1182 114 17 0 chr1 6417 6593 -242657760 + AluJb SINE Alu 3 181 -131 2352 97 3 0 chr1 12398 12708 -242651645 + AluSq SINE Alu 2 312 -1 2236 68 4 0 chr1 12859 13138 -242651215 - AluY SINE Alu -31 280 1 606 258 76 28 chr1 14055 14409 -242649944 - MLT1B LTR MaLR 0 374 18 238 203 7 115 chr1 18686 18834 -242645519 + (ACCTG)n Simple_repeat Simple_repeat 2 133 0 183 213 197 8 chr1 20331 20453 -242643900 - L2 LINE L2 -1168 2146 2002 921 103 7 13 chr1 25333 25488 -242638865 + pTR5 LTR ERV1 239 392 -2046 403 71 36 0 chr1 25488 25544 -242638809 + Alu SINE Alu 235 292 -17 1763 127 0 4 chr1 25554 25687 -242638666 + AluSx SINE Alu 1 134 -178 1851 122 48 7 chr1 25687 25981 -242638372 + AluSg SINE Alu 5 310 0 1763 127 0 4 chr1 25981 26107 -242638246 + AluSx SINE Alu 134 259 -53 1012 110 0 0 chr1 26162 26298 -242638055 + AluSq/x SINE Alu 1 136 -177 2100 114 0 13 chr1 26298 26597 -242637756 + AluSg SINE Alu 1 295 -15 2493 33 0 16 chr1 26600 26903 -242637450 + AluY SINE Alu 4 301 -10 1688 149 23 13 chr1 28600 28901 -242635452 - AluJo SINE Alu -7 305 2 855 176 7 7 chr1 29844 29997 -242634356 - FRAM SINE Alu -13 153 1 539 241 134 19 chr1 30326 30542 -242633811 + L1MC/D LINE L1 5500 5740 -502 1948 101 39 26 chr1 30619 30927 -242633426 + AluSx SINE Alu 1 312 0 186 232 130 29 chr1 32943 33012 -242631341 - MIR SINE MIR -80 182 107 208 264 9 36 chr1 33810 33920 -242630433 + (CCCG)n Simple_repeat Simple_repeat 2 108 0 23 78 0 0 chr1 34237 34288 -242630065 + GC_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr1 34353 34378 -242629975 + GC_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr1 35514 35560 -242628793 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 35811 35832 -242628521 + GC_rich Low_complexity Low_complexity 1 21 0 2468 87 0 0 chr1 38404 38715 -242625638 - AluSx SINE Alu -1 311 1 293 67 0 0 chr1 38760 38805 -242625548 + AluSp/q SINE Alu 198 242 -61 200 161 0 0 chr1 39198 39229 -242625124 + G-rich Low_complexity Low_complexity 4 34 0 895 76 111 47 chr1 39284 39456 -242624897 - MER30 DNA MER1_type -47 183 1 21 36 0 0 chr1 39718 39746 -242624607 + GC_rich Low_complexity Low_complexity 1 28 0 185 108 27 0 chr1 46920 46957 -242617396 + C-rich Low_complexity Low_complexity 3 40 0 280 245 7 7 chr1 47291 47430 -242616923 + (TG)n Simple_repeat Simple_repeat 1 139 0 298 290 21 0 chr1 47441 47534 -242616819 + (CGTG)n Simple_repeat Simple_repeat 3 97 0 309 221 11 33 chr1 47547 47728 -242616625 + (TG)n Simple_repeat Simple_repeat 1 177 0 1865 137 0 7 chr1 47995 48280 -242616073 + AluJo SINE Alu 5 287 -25 2276 96 0 0 chr1 48439 48740 -242615613 + AluSx SINE Alu 3 303 -9 267 225 50 88 chr1 49561 49761 -242614592 - L1M4 LINE L1 -3733 2413 2222 2107 96 4 0 chr1 49766 50087 -242614266 - AluSq SINE Alu 0 322 1 228 279 0 0 chr1 50399 50460 -242613893 + C-rich Low_complexity Low_complexity 5 65 0 1251 106 28 0 chr1 52200 52380 -242611973 + AluSg/x SINE Alu 115 299 -13 544 181 0 53 chr1 52396 52529 -242611824 + L1M4 LINE L1 4735 4860 -1286 2275 84 3 0 chr1 55166 55462 -242608891 + AluSg SINE Alu 3 299 -11 209 329 85 0 chr1 55973 56055 -242608298 - MIR SINE MIR -20 242 154 611 204 0 0 chr1 57324 57500 -242606853 + (TG)n Simple_repeat Simple_repeat 1 176 0 273 254 0 0 chr1 57511 57641 -242606712 + (TG)n Simple_repeat Simple_repeat 2 131 0 2154 100 0 0 chr1 57643 57924 -242606429 - AluY SINE Alu -16 295 15 231 148 19 0 chr1 58191 58245 -242606108 + L1MD3 LINE L1 7939 7993 -2 270 315 0 18 chr1 60486 60597 -242603756 + (CCCCG)n Simple_repeat Simple_repeat 2 110 0 236 152 22 0 chr1 62055 62101 -242602252 - MLT1C LTR MaLR -368 99 53 282 270 0 0 chr1 64422 64600 -242599753 + GA-rich Low_complexity Low_complexity 3 180 0 180 281 0 0 chr1 64613 64752 -242599601 + GA-rich Low_complexity Low_complexity 2 140 0 195 100 0 0 chr1 65341 65371 -242598982 + (CGGGG)n Simple_repeat Simple_repeat 1 30 0 2205 97 3 3 chr1 69632 69940 -242594413 - AluSg SINE Alu -2 308 1 488 206 6 24 chr1 74391 74561 -242589792 + C-rich Low_complexity Low_complexity 3 169 0 1999 125 16 0 chr1 77432 77736 -242586617 - AluSx SINE Alu -3 309 1 1392 162 4 4 chr1 77771 78000 -242586353 + AluJo SINE Alu 1 229 -83 2099 89 0 20 chr1 79433 79725 -242584628 - AluSx SINE Alu -17 295 10 183 351 18 0 chr1 83996 84053 -242580300 + L2 LINE L2 3250 3307 -6 2086 108 10 0 chr1 84821 85117 -242579236 + AluSx SINE Alu 1 299 -13 293 204 157 0 chr1 85165 85260 -242579093 + MLT1B LTR MaLR 3 104 -270 29 0 0 0 chr1 87737 87766 -242576587 + GC_rich Low_complexity Low_complexity 1 29 0 597 200 0 0 chr1 91227 91337 -242573016 + FLAM_C SINE Alu 1 110 -33 730 206 32 74 chr1 91530 91719 -242572634 + AluJb SINE Alu 4 184 -128 572 141 16 55 chr1 91797 91925 -242572428 + AluJb SINE Alu 189 311 -1 1398 213 45 0 chr1 91933 92220 -242572133 + AluJb SINE Alu 1 300 -12 337 222 7 37 chr1 93180 93457 -242570896 + (CA)n Simple_repeat Simple_repeat 1 268 0 2455 35 6 19 chr1 96328 96639 -242567714 + AluY SINE Alu 1 307 -4 768 287 0 0 chr1 97228 97364 -242566989 + C-rich Low_complexity Low_complexity 1 136 0 374 328 112 11 chr1 97368 97670 -242566683 - L1MCa LINE L1 -1205 1582 1338 2001 42 0 0 chr1 97770 98009 -242566344 + AluY SINE Alu 62 300 -11 2427 197 92 87 chr1 98009 98296 -242566057 - L1M4 LINE L1 -2744 3900 3616 1621 126 0 8 chr1 98296 98534 -242565819 - AluSg/x SINE Alu -2 310 75 2427 197 92 87 chr1 98534 98694 -242565659 - L1M4 LINE L1 -3028 3616 3458 2137 92 33 13 chr1 98694 98998 -242565355 - AluSq SINE Alu -3 310 1 2427 197 92 87 chr1 98998 99193 -242565160 - L1M4 LINE L1 -3186 3458 3266 764 206 0 0 chr1 99193 99319 -242565034 + FLAM_A SINE Alu 5 130 -3 2427 197 92 87 chr1 99319 99473 -242564880 - L1M4 LINE L1 -3378 3266 3114 3765 103 4 10 chr1 99473 99987 -242564366 - MER9 LTR ERVK 0 511 1 2427 197 92 87 chr1 99987 100262 -242564091 - L1M4 LINE L1 -3530 3114 2820 1895 250 95 75 chr1 100720 100923 -242563430 - L1M4 LINE L1 -3800 2844 2646 2297 83 3 0 chr1 100923 101224 -242563129 + AluY SINE Alu 1 302 -9 1895 250 95 75 chr1 101224 101576 -242562777 - L1M4 LINE L1 -3998 2646 2302 1506 208 17 10 chr1 101576 101864 -242562489 + AluJb SINE Alu 5 294 -18 1895 250 95 75 chr1 101864 102679 -242561674 - L1M4 LINE L1 -4342 2302 1439 1654 164 30 10 chr1 102679 102983 -242561370 - AluSx SINE Alu -2 310 1 1895 250 95 75 chr1 102983 103197 -242561156 - L1M4 LINE L1 -5205 1439 1231 278 106 0 0 chr1 103203 103250 -242561103 - AluSq/x SINE Alu -169 133 87 1249 173 4 27 chr1 103251 103341 -242561012 - AluJo SINE Alu -92 220 130 1775 158 10 7 chr1 103341 103632 -242560721 - AluJo SINE Alu -20 292 1 1249 173 4 27 chr1 103632 103766 -242560587 - AluJo SINE Alu -182 130 1 404 292 134 38 chr1 103781 103990 -242560363 - L1M4 LINE L1 -6148 394 166 243 261 159 23 chr1 104032 104120 -242560233 + L2 LINE L2 3210 3309 -4 208 232 0 71 chr1 104978 105090 -242559263 + C-rich Low_complexity Low_complexity 1 104 0 24 32 0 0 chr1 105516 105547 -242558806 + GC_rich Low_complexity Low_complexity 1 31 0 2141 114 3 0 chr1 108826 109123 -242555230 - AluSx SINE Alu -14 298 1 1568 193 10 10 chr1 109174 109475 -242554878 + AluJb SINE Alu 1 301 -11 301 226 71 0 chr1 109723 109807 -242554546 + MSTD LTR MaLR 16 105 -291 225 198 79 8 chr1 110228 110354 -242553999 + (CA)n Simple_repeat Simple_repeat 1 135 0 267 309 65 22 chr1 110635 110774 -242553579 + L1MC3 LINE L1 6705 6849 -936 629 257 27 9 chr1 110900 111122 -242553231 + L1MC3 LINE L1 7320 7545 -240 217 320 0 29 chr1 111836 112008 -242552345 + (CGGG)n Simple_repeat Simple_repeat 3 169 0 1604 134 12 78 chr1 113740 114061 -242550292 - AluJo SINE Alu -12 300 1 202 382 34 0 chr1 114245 114334 -242550019 + MIR SINE MIR 53 144 -118 248 243 14 14 chr1 114417 114491 -242549862 + (CA)n Simple_repeat Simple_repeat 1 74 0 217 306 12 35 chr1 114590 114675 -242549678 + L2 LINE L2 2320 2402 -912 268 234 52 39 chr1 114767 114844 -242549509 + L2 LINE L2 3179 3256 -16 2051 115 10 0 chr1 115012 115307 -242549046 - AluSx SINE Alu -14 298 1 307 163 9 9 chr1 115544 115626 -242548727 + FLAM SINE Alu 58 133 0 366 266 93 103 chr1 118912 119224 -242545129 + HAL1 LINE L1 985 1293 -1214 460 237 171 13 chr1 124001 124229 -242540124 - MLT1C LTR MaLR -203 264 1 221 292 62 31 chr1 125208 125304 -242539049 + MIR SINE MIR 34 132 -76 1473 154 67 4 chr1 128184 128451 -242535902 + AluJb SINE Alu 2 285 -27 1752 161 0 32 chr1 128476 128562 -242535791 - AluJb SINE Alu -11 301 214 6627 102 25 13 chr1 128562 129504 -242534849 - LTR13 LTR ERVK 0 954 1 1752 161 0 32 chr1 129504 129728 -242534625 - AluJb SINE Alu -98 214 1 638 89 0 30 chr1 129739 129840 -242534513 - AluSg/x SINE Alu -14 298 201 270 284 60 17 chr1 130365 130481 -242533872 + L2 LINE L2 2490 2610 -704 376 289 12 36 chr1 130650 130816 -242533537 + (CGTG)n Simple_repeat Simple_repeat 4 165 0 291 313 0 87 chr1 130830 131025 -242533328 + (CGTG)n Simple_repeat Simple_repeat 1 178 0 794 218 45 1 chr1 131185 131547 -242532806 - MER54A LTR ERVL -6 895 489 256 289 41 41 chr1 132699 132820 -242531533 - L2 LINE L2 -1315 1999 1879 1464 90 24 14 chr1 133307 133519 -242530834 - AluY SINE Alu -30 281 68 2190 83 4 0 chr1 133519 133795 -242530558 - AluSp SINE Alu -36 277 1 1624 168 11 0 chr1 135372 135640 -242528713 + AluJo SINE Alu 23 293 -19 1037 110 0 0 chr1 136128 136264 -242528089 + AluSq/x SINE Alu 1 136 -177 1983 116 0 0 chr1 136264 136531 -242527822 + AluSx SINE Alu 1 267 -45 590 184 34 101 chr1 136945 137152 -242527201 + MER68 LTR ERV1 159 351 -211 547 67 22 0 chr1 137203 137292 -242527061 + (TG)n Simple_repeat Simple_repeat 1 91 0 2027 97 0 25 chr1 137294 137573 -242526780 - AluSc SINE Alu -35 274 3 856 96 0 3 chr1 137952 138182 -242526171 + AluSx SINE Alu 1 294 -16 2214 80 7 20 chr1 138182 138482 -242525871 + AluY SINE Alu 1 296 -15 2255 81 0 0 chr1 138523 138831 -242525522 - AluSq SINE Alu 0 308 1 1531 163 78 0 chr1 140338 140608 -242523745 - AluJb SINE Alu -10 302 12 2212 98 0 13 chr1 141100 141406 -242522947 - AluSq SINE Alu -11 302 1 2045 155 50 11 chr1 141532 141893 -242522460 + THE1C LTR MaLR 1 375 0 983 162 29 17 chr1 143320 143335 -242521018 + AluSq SINE Alu 121 134 -179 2341 99 3 0 chr1 143335 143647 -242520706 + AluSp SINE Alu 1 313 0 983 162 29 17 chr1 143647 143804 -242520549 + AluSq SINE Alu 134 295 -18 30 0 0 0 chr1 145164 145194 -242519159 + GC_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr1 145624 145646 -242518707 + GC_rich Low_complexity Low_complexity 1 22 0 2513 162 109 17 chr1 147355 147898 -242516455 - MER4B LTR ERV1 -17 593 1 1263 164 9 0 chr1 147898 148124 -242516229 - MER4B-int LTR ERV1 0 6758 6531 2097 117 3 0 chr1 148127 148417 -242515936 - AluSx SINE Alu -18 294 4 2504 166 68 79 chr1 148421 148769 -242515584 - MER4B-int LTR ERV1 -4502 2256 1906 2108 119 0 3 chr1 148769 149064 -242515289 - AluSx SINE Alu -18 294 1 2504 166 68 79 chr1 149064 149191 -242515162 - MER4B-int LTR ERV1 -4852 1906 1779 2361 58 0 3 chr1 149191 149486 -242514867 + AluY SINE Alu 1 294 -17 2504 166 68 79 chr1 149486 149769 -242514584 - MER4B-int LTR ERV1 -4979 1779 1494 2021 139 0 0 chr1 149769 150064 -242514289 + AluSx SINE Alu 1 295 -17 2504 166 68 79 chr1 150064 150131 -242514222 - MER4B-int LTR ERV1 -5264 1494 1428 2204 112 0 0 chr1 150131 150435 -242513918 - AluSq SINE Alu -9 304 1 2504 166 68 79 chr1 150435 150733 -242513620 - MER4B-int LTR ERV1 -5330 1428 698 2551 152 14 42 chr1 150836 151043 -242513310 - MER4B-int LTR ERV1 -6035 723 512 2515 50 0 0 chr1 151043 151343 -242513010 - AluY SINE Alu -10 301 2 2551 152 14 42 chr1 151343 151635 -242512718 - MER4B-int LTR ERV1 -6246 512 238 1010 80 0 29 chr1 151687 151825 -242512528 + AluSc SINE Alu 1 134 -175 2427 57 7 0 chr1 151825 152125 -242512228 + AluY SINE Alu 1 302 -9 1517 163 62 0 chr1 152125 152431 -242511922 - MER4B LTR ERV1 -283 327 3 298 257 86 9 chr1 153795 153900 -242510453 - MIR SINE MIR -117 145 33 2448 57 0 0 chr1 154395 154692 -242509661 - AluY SINE Alu -12 299 3 2157 119 3 0 chr1 155059 155362 -242508991 + AluSp SINE Alu 1 304 -9 180 77 0 0 chr1 157330 157356 -242506997 + (CCA)n Simple_repeat Simple_repeat 2 27 0 207 122 58 70 chr1 159580 159752 -242504601 + (TCTCTG)n Simple_repeat Simple_repeat 1 170 0 280 125 56 56 chr1 159800 160125 -242504228 + (TCTCTG)n Simple_repeat Simple_repeat 1 325 0 279 116 52 64 chr1 160182 160354 -242503999 + (TCTCTG)n Simple_repeat Simple_repeat 1 170 0 276 325 0 38 chr1 160354 160511 -242503842 + C-rich Low_complexity Low_complexity 5 155 0 202 183 0 84 chr1 163965 164036 -242500317 + C-rich Low_complexity Low_complexity 4 68 0 213 65 0 0 chr1 164205 164236 -242500117 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 211 235 12 37 chr1 164248 164329 -242500024 + (CGGGG)n Simple_repeat Simple_repeat 1 79 0 264 325 26 13 chr1 166996 167147 -242497206 + (CACG)n Simple_repeat Simple_repeat 4 156 0 2133 103 17 0 chr1 171008 171310 -242493043 - AluSp SINE Alu -6 307 1 976 161 0 40 chr1 171313 171487 -242492866 - AluJb SINE Alu -18 294 128 1652 148 36 26 chr1 171500 171803 -242492550 - AluJo SINE Alu -6 306 1 189 238 48 60 chr1 171938 172022 -242492331 + L2 LINE L2 2230 2312 -1002 212 329 12 0 chr1 176911 176996 -242487357 + (CA)n Simple_repeat Simple_repeat 1 86 0 27 0 0 0 chr1 177900 177927 -242486426 + GC_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr1 177986 178009 -242486344 + GC_rich Low_complexity Low_complexity 1 23 0 1797 91 0 4 chr1 178154 178396 -242485957 + AluSc SINE Alu 63 303 -6 457 258 24 0 chr1 178487 178611 -242485742 + MER66-int LTR ERV1 213 339 -6337 286 175 35 0 chr1 178756 178813 -242485540 - AluSp/q SINE Alu -5 298 240 1400 84 0 0 chr1 178814 178993 -242485360 - AluY SINE Alu -132 179 1 442 172 108 0 chr1 179027 179120 -242485233 - MER66B LTR ERV1 0 486 384 760 233 11 23 chr1 179120 179296 -242485057 - AluSq SINE Alu -3 310 137 1919 112 22 0 chr1 179311 179580 -242484773 - AluSx SINE Alu -37 275 1 445 298 45 20 chr1 179607 179805 -242484548 - MER66B LTR ERV1 -142 344 142 2040 94 43 0 chr1 182305 182582 -242481771 - AluSx SINE Alu -23 289 1 1350 164 98 0 chr1 182603 182716 -242481637 - AluJo SINE Alu -44 268 168 2559 38 0 22 chr1 182716 183034 -242481319 - AluY SINE Alu 0 311 1 1350 164 98 0 chr1 183034 183164 -242481189 - AluJo SINE Alu -144 168 1 312 61 41 0 chr1 183164 183213 -242481140 - AluJo SINE Alu -167 135 85 1599 120 43 0 chr1 183288 183522 -242480831 - AluSx SINE Alu -68 244 1 935 74 0 0 chr1 184039 184160 -242480193 + AluSg/x SINE Alu 182 302 -8 1732 122 26 51 chr1 184161 184473 -242479880 + AluSx SINE Alu 2 305 -7 353 231 136 0 chr1 184700 184869 -242479484 - MER63 DNA MER1_type -45 1017 826 240 265 0 15 chr1 184948 184991 -242479362 - AluJo SINE Alu -123 179 136 1895 128 0 52 chr1 184991 185297 -242479056 - AluSx SINE Alu -22 290 1 240 265 0 15 chr1 185297 185321 -242479032 - AluJo SINE Alu -166 136 113 2263 91 13 0 chr1 186636 186944 -242477409 - AluSx SINE Alu 0 312 1 2090 117 0 0 chr1 189639 189930 -242474423 - AluSx SINE Alu -21 291 1 414 142 142 19 chr1 190909 191015 -242473338 + MER20 DNA MER1_type 53 171 -48 2164 111 3 0 chr1 192073 192370 -242471983 - AluSg SINE Alu -12 298 1 309 243 70 119 chr1 192522 192548 -242471805 - HAL1 LINE L1 -2 2505 2479 2352 61 3 0 chr1 192548 192841 -242471512 + AluY SINE Alu 1 294 -17 309 243 70 119 chr1 192841 192886 -242471467 - HAL1 LINE L1 -28 2479 2433 1620 169 35 0 chr1 192886 193170 -242471183 + AluJo SINE Alu 4 297 -15 309 243 70 119 chr1 193170 193190 -242471163 - HAL1 LINE L1 -74 2433 2414 2162 88 10 7 chr1 193190 193485 -242470868 + AluY SINE Alu 1 296 -15 309 243 70 119 chr1 193485 193576 -242470777 - HAL1 LINE L1 -93 2414 2330 2239 97 3 0 chr1 193592 193890 -242470463 - AluSx SINE Alu -13 299 1 1628 149 57 7 chr1 193897 194179 -242470174 - AluJo SINE Alu -16 296 1 1018 157 17 0 chr1 194415 194593 -242469760 + AluJb SINE Alu 120 300 -12 2274 90 0 0 chr1 194593 194894 -242469459 + AluY SINE Alu 1 301 -10 255 261 85 24 chr1 194985 195150 -242469203 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 379 243 47 24 chr1 195171 195420 -242468933 + (CTCA)n Simple_repeat Simple_repeat 1 254 0 255 318 6 11 chr1 195450 195626 -242468727 + (CA)n Simple_repeat Simple_repeat 1 175 0 * 378 268 36 40 chr1 195528 195871 -242468482 + (CTCA)n Simple_repeat Simple_repeat 1 341 0 437 256 64 21 chr1 195948 196289 -242468064 + (CTCA)n Simple_repeat Simple_repeat 1 355 0 332 339 0 0 chr1 196226 196394 -242467959 + (CA)n Simple_repeat Simple_repeat 1 168 0 * 431 266 40 29 chr1 196336 196509 -242467844 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 285 204 57 45 chr1 196691 196767 -242467586 - AluJb SINE Alu -89 213 139 1621 155 13 44 chr1 196767 196948 -242467405 - AluJo SINE Alu -6 306 121 2158 113 7 0 chr1 196948 197258 -242467095 - AluSp SINE Alu -1 312 1 2145 105 16 3 chr1 197258 197563 -242466790 - AluSp SINE Alu -4 309 1 1988 128 0 3 chr1 197563 197844 -242466509 - AluSx SINE Alu -18 294 14 1621 155 13 44 chr1 197844 197976 -242466377 - AluJo SINE Alu -188 124 1 285 204 57 45 chr1 197976 197987 -242466366 - AluJb SINE Alu -163 139 125 1937 116 10 20 chr1 198282 198413 -242465940 + AluSq SINE Alu 4 135 -178 2360 88 0 0 chr1 198413 198709 -242465644 + AluSg SINE Alu 2 297 -13 2324 76 0 10 chr1 198709 199009 -242465344 + AluY SINE Alu 1 298 -13 1937 116 10 20 chr1 199009 199179 -242465174 + AluSq SINE Alu 133 303 -10 650 159 68 38 chr1 199180 199312 -242465041 + FRAM SINE Alu 9 144 -32 1393 128 0 0 chr1 199313 199509 -242464844 - AluSg/x SINE Alu -15 297 102 2258 94 0 3 chr1 199512 199809 -242464544 - AluSc SINE Alu -13 296 1 2300 96 0 3 chr1 199810 200113 -242464240 - AluSx SINE Alu -10 302 1 243 304 78 10 chr1 201219 201321 -242463032 + L2 LINE L2 3158 3266 -6 184 264 6 6 chr1 201380 201539 -242462814 + (TG)n Simple_repeat Simple_repeat 2 160 0 288 273 0 0 chr1 201584 201760 -242462593 + (TG)n Simple_repeat Simple_repeat 1 176 0 1029 211 127 24 chr1 204720 204794 -242459559 + MER54A LTR ERVL 489 554 -347 1857 128 10 14 chr1 204794 205084 -242459269 - AluSq SINE Alu -22 291 3 1029 211 127 24 chr1 205084 205378 -242458975 + MER54A LTR ERVL 554 895 -6 189 0 0 0 chr1 205966 205987 -242458366 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 190 324 14 0 chr1 207033 207107 -242457246 + MIR SINE MIR 56 130 -132 180 111 0 0 chr1 211606 211633 -242452720 + (TG)n Simple_repeat Simple_repeat 1 27 0 394 333 11 11 chr1 211706 211883 -242452470 + (TG)n Simple_repeat Simple_repeat 1 177 0 296 286 4 18 chr1 211940 212218 -242452135 + (TG)n Simple_repeat Simple_repeat 1 273 0 255 258 0 38 chr1 212223 212409 -242451944 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 201 188 0 80 chr1 215229 215341 -242449012 + (CTCCG)n Simple_repeat Simple_repeat 4 106 0 202 260 0 52 chr1 219359 219455 -242444898 + (CAGGG)n Simple_repeat Simple_repeat 5 95 0 1300 96 15 20 chr1 221545 221742 -242442611 + AluSg/x SINE Alu 110 305 -7 562 189 78 20 chr1 221776 221929 -242442424 - L1MC4a LINE L1 -1260 6548 6387 25 31 0 0 chr1 222185 222217 -242442136 + GC_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr1 222347 222396 -242441957 + GC_rich Low_complexity Low_complexity 1 49 0 245 146 31 73 chr1 222549 222645 -242441708 + C-rich Low_complexity Low_complexity 5 96 0 359 306 41 0 chr1 226330 226500 -242437853 + C-rich Low_complexity Low_complexity 3 179 0 300 247 45 45 chr1 226492 226670 -242437683 + (CCCCG)n Simple_repeat Simple_repeat 2 179 0 * 383 293 43 0 chr1 226576 226740 -242437613 + C-rich Low_complexity Low_complexity 3 173 0 349 301 43 0 chr1 226776 226939 -242437414 + C-rich Low_complexity Low_complexity 4 173 0 350 308 41 0 chr1 226970 227139 -242437214 + C-rich Low_complexity Low_complexity 4 179 0 291 222 11 83 chr1 227188 227368 -242436985 + CT-rich Low_complexity Low_complexity 1 167 0 * 343 317 37 0 chr1 227365 227529 -242436824 + C-rich Low_complexity Low_complexity 3 172 0 245 222 28 19 chr1 227690 227798 -242436555 + (CCGCG)n Simple_repeat Simple_repeat 4 112 0 24 0 0 0 chr1 227878 227902 -242436451 + GC_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr1 228016 228057 -242436296 + GC_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr1 228373 228406 -242435947 + GC_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr1 232037 232062 -242432291 + GC_rich Low_complexity Low_complexity 1 25 0 187 176 0 54 chr1 235539 235613 -242428740 + G-rich Low_complexity Low_complexity 2 71 0 1678 145 0 0 chr1 235981 236229 -242428124 + AluSx SINE Alu 55 302 -10 1979 121 24 17 chr1 236234 236532 -242427821 + AluSq SINE Alu 1 300 -13 2334 83 3 0 chr1 236571 236873 -242427480 + AluSx SINE Alu 2 304 -8 737 104 104 49 chr1 236877 237021 -242427332 - FRAM SINE Alu -30 146 1 2189 86 6 22 chr1 237035 237348 -242427005 + AluSq SINE Alu 1 308 -5 575 315 89 78 chr1 237515 237791 -242426562 + L1MEc LINE L1 1390 1661 -4554 2247 39 3 43 chr1 237791 238096 -242426257 - AluY SINE Alu -18 293 1 575 315 89 78 chr1 238096 238303 -242426050 + L1MEc LINE L1 1661 1864 -4351 1445 150 66 31 chr1 238303 238589 -242425764 + AluJb SINE Alu 2 297 -15 575 315 89 78 chr1 238589 238755 -242425598 + L1MEc LINE L1 1864 2612 -3603 300 331 120 38 chr1 239534 239800 -242424553 - L2 LINE L2 -20 3293 3006 214 236 64 27 chr1 241943 242053 -242422300 + L2 LINE L2 3133 3246 -26 229 113 0 38 chr1 242462 242515 -242421838 + (GGGGA)n Simple_repeat Simple_repeat 5 55 0 316 349 0 0 chr1 242660 242809 -242421544 + G-rich Low_complexity Low_complexity 1 149 0 1774 147 7 20 chr1 243465 243757 -242420596 - AluJo SINE Alu -22 290 3 249 143 175 13 chr1 243913 244067 -242420286 + (GGCTG)n Simple_repeat Simple_repeat 1 179 0 305 106 211 7 chr1 244087 244229 -242420124 + (GGCTG)n Simple_repeat Simple_repeat 4 174 0 209 60 40 40 chr1 244804 244854 -242419499 + (CGGGGG)n Simple_repeat Simple_repeat 4 53 0 234 261 6 68 chr1 249683 249859 -242414494 + (TG)n Simple_repeat Simple_repeat 1 165 0 205 284 40 47 chr1 250107 250255 -242414098 + (CGTG)n Simple_repeat Simple_repeat 4 150 0 1631 176 40 10 chr1 452094 452395 -242211958 - AluSq SINE Alu -3 310 1 1243 156 5 0 chr1 452681 452880 -242211473 - AluSx SINE Alu -81 231 32 739 274 55 20 chr1 452887 453417 -242210936 - L1ME2 LINE L1 -47 6117 5549 378 250 15 76 chr1 453768 453900 -242210453 + L1MC4 LINE L1 6966 7089 -953 1800 167 10 6 chr1 453941 454252 -242210101 + AluJo SINE Alu 1 312 0 906 191 0 0 chr1 454252 454414 -242209939 + AluJo/FRAM SINE Alu 132 293 -19 182 91 30 0 chr1 454416 454449 -242209904 + GA-rich Low_complexity Low_complexity 1 34 0 963 312 148 10 chr1 454454 455057 -242209296 + L1MC4 LINE L1 7284 7990 -5 2355 85 0 0 chr1 455283 455588 -242208765 - AluY SINE Alu -6 305 1 2217 101 0 10 chr1 455589 455895 -242208458 - AluSx SINE Alu -9 303 1 2143 72 0 38 chr1 455906 456223 -242208130 - AluY SINE Alu 0 306 1 450 302 105 43 chr1 456428 456915 -242207438 + HAL1 LINE L1 1749 2265 -242 307 289 41 29 chr1 457209 457238 -242207115 + L1M4 LINE L1 2797 2824 -3322 2059 120 36 0 chr1 457238 457539 -242206814 + AluSx SINE Alu 1 312 0 307 289 41 29 chr1 457539 457751 -242206602 + L1M4 LINE L1 2824 3041 -3105 2266 106 0 0 chr1 457823 458134 -242206219 - AluY SINE Alu 0 311 1 2192 114 0 0 chr1 458134 458432 -242205921 - AluSx SINE Alu -14 298 1 2309 98 0 0 chr1 458445 458752 -242205601 - AluY SINE Alu -4 307 1 207 69 0 0 chr1 459630 459659 -242204694 + (CACGC)n Simple_repeat Simple_repeat 4 32 0 2438 47 0 17 chr1 463585 463886 -242200467 + AluY SINE Alu 6 301 -10 1091 68 0 0 chr1 463902 464035 -242200318 + AluSq/x SINE Alu 1 133 -179 2502 48 0 16 chr1 464038 464348 -242200005 + AluY SINE Alu 1 305 -6 2422 72 0 25 chr1 464364 464500 -242199853 + AluSq SINE Alu 1 139 -174 2380 68 0 10 chr1 464500 464808 -242199545 + AluY SINE Alu 1 305 -6 279 0 0 0 chr1 464808 464839 -242199514 + (TA)n Simple_repeat Simple_repeat 1 31 0 2422 72 0 25 chr1 464839 465022 -242199331 + AluSq SINE Alu 137 313 0 292 250 0 26 chr1 468200 468276 -242196077 + (CACG)n Simple_repeat Simple_repeat 3 76 0 213 39 0 0 chr1 468277 468303 -242196050 + (CA)n Simple_repeat Simple_repeat 2 27 0 277 395 26 21 chr1 468695 468885 -242195468 + MIR3 SINE MIR 4 194 -14 2477 47 7 0 chr1 469357 469654 -242194699 - AluY SINE Alu -12 299 1 182 152 0 22 chr1 470847 470893 -242193460 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 356 253 11 59 chr1 470966 471152 -242193201 + G-rich Low_complexity Low_complexity 3 179 0 * 422 124 15 144 chr1 471023 471225 -242193128 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 259 345 0 0 chr1 471168 471345 -242193008 + G-rich Low_complexity Low_complexity 1 177 0 * 21 36 0 0 chr1 471595 471623 -242192730 + GC_rich Low_complexity Low_complexity 1 28 0 243 350 98 12 chr1 472299 472462 -242191891 + MIR SINE MIR 47 223 -39 695 120 28 28 chr1 473320 473428 -242190925 + AluJo SINE Alu 34 141 -171 1629 173 43 17 chr1 473428 473550 -242190803 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr1 473550 473571 -242190782 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1629 173 43 17 chr1 473571 473749 -242190604 + AluJb SINE Alu 118 309 -3 697 167 0 0 chr1 473755 473863 -242190490 + AluSg/x SINE Alu 191 298 -14 2400 84 0 0 chr1 474157 474466 -242189887 - AluY SINE Alu 0 311 3 2120 124 0 7 chr1 474468 474766 -242189587 - AluSx SINE Alu -16 296 1 761 276 128 43 chr1 475540 475780 -242188573 - MLT1C LTR MaLR -7 460 242 2154 132 3 0 chr1 475780 476090 -242188263 - AluSq SINE Alu -2 311 1 2288 104 0 3 chr1 476098 476406 -242187947 - AluSx SINE Alu -3 309 3 761 276 128 43 chr1 476406 476577 -242187776 - MLT1C LTR MaLR -231 236 4 270 0 0 0 chr1 476782 476812 -242187541 + (GGCTG)n Simple_repeat Simple_repeat 4 33 0 1897 171 0 0 chr1 479336 479646 -242184707 - AluSx SINE Alu -2 310 1 1481 177 79 4 chr1 479648 479925 -242184428 - AluJo SINE Alu -14 298 1 194 71 0 71 chr1 481381 481423 -242182930 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 33 66 0 0 chr1 481489 481550 -242182803 + GC_rich Low_complexity Low_complexity 1 61 0 333 212 28 34 chr1 481818 481997 -242182356 + GA-rich Low_complexity Low_complexity 1 178 0 328 250 12 30 chr1 482025 482189 -242182164 + GA-rich Low_complexity Low_complexity 3 163 0 198 220 34 25 chr1 482220 482338 -242182015 + GA-rich Low_complexity Low_complexity 5 123 0 312 367 20 27 chr1 482364 482514 -242181839 + HAL1b LINE L1 1 149 -1199 1632 136 57 4 chr1 484099 484363 -242179990 + AluJo SINE Alu 1 278 -34 2353 52 24 0 chr1 485243 485533 -242178820 - AluSx SINE Alu -15 297 1 309 204 118 11 chr1 486916 487009 -242177344 - MER5A DNA MER1_type -5 184 82 2139 114 3 10 chr1 487615 487923 -242176430 - AluJo SINE Alu -6 306 1 2635 26 0 7 chr1 487936 488245 -242176108 - AluY SINE Alu 0 311 5 371 184 18 53 chr1 488391 488505 -242175848 + MLT1A2 LTR MaLR 111 220 -154 515 271 140 4 chr1 488920 489149 -242175204 + L1MC1 LINE L1 5840 6099 -234 185 65 32 0 chr1 489252 489283 -242175070 + (CAGGG)n Simple_repeat Simple_repeat 4 35 0 274 183 57 3 chr1 489285 489359 -242174994 + L1MC1 LINE L1 6261 6333 0 2433 71 3 0 chr1 489369 489680 -242174673 + AluSx SINE Alu 1 312 0 463 273 100 49 chr1 493067 493430 -242170923 + MLT1A1 LTR MaLR 4 358 -7 232 173 0 31 chr1 493432 493560 -242170793 + (CTCA)n Simple_repeat Simple_repeat 1 124 0 1150 103 13 0 chr1 493570 493726 -242170627 - AluSg/x SINE Alu -21 291 134 2177 94 0 16 chr1 493726 494035 -242170318 - AluSx SINE Alu -8 304 1 332 161 0 23 chr1 494045 494132 -242170221 + (CTCA)n Simple_repeat Simple_repeat 2 86 0 225 297 30 10 chr1 495706 495807 -242168546 - L2 LINE L2 -358 2956 2854 280 291 0 51 chr1 496368 496526 -242167827 + (TCCG)n Simple_repeat Simple_repeat 1 150 0 249 280 43 0 chr1 498366 498459 -242165894 + L1M4 LINE L1 5613 5709 -475 461 300 132 26 chr1 498462 498885 -242165468 + L1MB7 LINE L1 5671 6138 -46 270 326 0 0 chr1 500479 500577 -242163776 - MER47B DNA MER2_type 0 418 321 455 288 119 3 chr1 500588 500907 -242163446 - MER47B DNA MER2_type -51 367 12 477 162 42 6 chr1 501443 501610 -242162743 + (TTGGGG)n Simple_repeat Simple_repeat 2 174 0 302 326 0 41 chr1 503956 504128 -242160225 + (CACG)n Simple_repeat Simple_repeat 4 168 0 244 240 40 13 chr1 505083 505158 -242159195 + L1MB3 LINE L1 5413 5489 -682 327 266 23 0 chr1 505216 505312 -242159041 + L1MB3 LINE L1 5512 5613 -561 2156 101 7 7 chr1 505312 505608 -242158745 + AluSx SINE Alu 2 297 -15 327 266 23 0 chr1 505608 505620 -242158733 + L1MB3 LINE L1 5613 5623 -551 684 91 0 0 chr1 505620 505708 -242158645 - AluY SINE Alu -13 298 211 1732 250 41 30 chr1 505830 506397 -242157956 + L1MB3 LINE L1 5609 6181 -2 207 270 11 60 chr1 507048 507233 -242157120 + C-rich Low_complexity Low_complexity 2 177 0 * 311 253 18 42 chr1 507104 507270 -242157083 + (CCCA)n Simple_repeat Simple_repeat 1 162 0 732 207 39 6 chr1 508576 508755 -242155598 + MER58A DNA MER1_type 40 224 0 2151 110 0 13 chr1 508968 509278 -242155075 + AluSx SINE Alu 3 308 -4 1866 148 0 0 chr1 510448 510731 -242153622 - AluJb SINE Alu -23 289 7 635 242 62 0 chr1 511157 511335 -242153018 + MER58A DNA MER1_type 36 224 0 398 299 119 21 chr1 511340 511534 -242152819 - MIR SINE MIR -22 240 28 1261 208 144 5 chr1 512228 512617 -242151736 - MER54A LTR ERVL 0 901 459 321 289 21 48 chr1 512734 512921 -242151432 + L1M4 LINE L1 3729 3910 -2236 2345 76 0 29 chr1 512950 513265 -242151088 - AluY SINE Alu -5 306 1 627 297 36 89 chr1 514059 514126 -242150227 + L1M4 LINE L1 4369 4438 -1708 831 152 0 8 chr1 514126 514258 -242150095 + FLAM_C SINE Alu 1 131 -2 627 297 36 89 chr1 514258 514442 -242149911 + L1M4 LINE L1 4438 4600 -1546 2090 130 0 0 chr1 514442 514742 -242149611 + AluSx SINE Alu 1 300 -12 627 297 36 89 chr1 514742 514826 -242149527 + L1M4 LINE L1 4600 4687 -1459 411 21 0 0 chr1 516601 516649 -242147704 + (CA)n Simple_repeat Simple_repeat 2 49 0 1559 80 0 0 chr1 517761 517960 -242146393 + AluY SINE Alu 105 303 -8 1009 207 176 100 chr1 518904 519040 -242145313 + MER68 LTR ERV1 4 128 -434 678 136 88 32 chr1 519040 519165 -242145188 + FLAM_C SINE Alu 2 133 0 1009 207 176 100 chr1 519165 519176 -242145177 + MER68 LTR ERV1 128 137 -425 1811 149 40 7 chr1 519176 519477 -242144876 + AluSx SINE Alu 1 311 -1 1009 207 176 100 chr1 519477 519542 -242144811 + MER68 LTR ERV1 137 196 -366 1736 244 129 11 chr1 519542 520006 -242144347 + MLT2B1 LTR ERVL 2 520 0 1009 207 176 100 chr1 520006 520303 -242144050 + MER68 LTR ERV1 196 554 -8 253 289 11 44 chr1 520501 520591 -242143762 + L2 LINE L2 3185 3271 -1 241 225 12 12 chr1 521033 521113 -242143240 + (CACCAT)n Simple_repeat Simple_repeat 4 83 0 535 234 0 22 chr1 521165 521349 -242143004 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 705 204 2 19 chr1 521368 521780 -242142573 + (CACCAT)n Simple_repeat Simple_repeat 1 405 0 351 309 66 7 chr1 521869 522005 -242142348 - MIR SINE MIR -86 176 33 846 184 44 0 chr1 522209 522367 -242141986 - AluJb SINE Alu -55 257 93 268 299 23 0 chr1 523362 523449 -242140904 + MER91A DNA MER1_type 16 104 -92 1732 261 101 47 chr1 523618 524335 -242140018 + L1MB5 LINE L1 5353 6117 -57 2151 112 3 0 chr1 524335 524631 -242139722 - AluSx SINE Alu -15 297 1 1732 261 101 47 chr1 524631 524693 -242139660 + L1MB5 LINE L1 6117 6174 0 1526 170 3 80 chr1 524731 525055 -242139298 + AluJb SINE Alu 1 299 -13 783 200 48 24 chr1 525061 525226 -242139127 + FRAM SINE Alu 1 168 -8 735 278 15 0 chr1 525574 525772 -242138581 + Tigger3(Golem) DNA MER2_type 2837 3037 0 2466 46 0 13 chr1 526699 527005 -242137348 - AluY SINE Alu -9 302 1 1717 142 21 21 chr1 527014 527303 -242137050 - AluJo SINE Alu -23 289 1 201 350 73 36 chr1 528111 528248 -242136105 + MER5A DNA MER1_type 13 154 -35 313 240 40 0 chr1 528290 528390 -242135963 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 534 308 20 20 chr1 528405 528751 -242135602 + (TGGA)n Simple_repeat Simple_repeat 1 346 0 260 268 26 0 chr1 528765 528918 -242135435 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 276 330 25 0 chr1 528932 529050 -242135303 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 219 263 25 0 chr1 529064 529182 -242135171 + (TGGA)n Simple_repeat Simple_repeat 4 124 0 385 321 28 11 chr1 529197 529542 -242134811 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 447 305 29 0 chr1 529556 529730 -242134623 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 410 316 23 17 chr1 529751 529928 -242134425 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 386 188 41 0 chr1 529970 530140 -242134213 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 1387 100 5 0 chr1 531194 531384 -242132969 + AluY SINE Alu 108 298 -13 414 276 266 3 chr1 531386 531672 -242132681 - L1MC4 LINE L1 -1223 6819 6459 471 241 87 100 chr1 531725 531908 -242132445 + LTR16C LTR ERVL 254 438 -53 933 110 16 0 chr1 531908 532035 -242132318 + FLAM_C SINE Alu 1 129 -4 2177 95 0 3 chr1 532045 532366 -242131987 + AluSx SINE Alu 1 320 0 471 241 87 100 chr1 532366 532411 -242131942 + LTR16C LTR ERVL 447 491 0 2310 91 3 3 chr1 532434 532742 -242131611 + AluSq SINE Alu 1 308 -5 183 156 0 0 chr1 532893 532925 -242131428 + (CAGGG)n Simple_repeat Simple_repeat 5 36 0 209 302 47 19 chr1 533005 533111 -242131242 + L2 LINE L2 2950 3058 -255 2301 108 0 0 chr1 534104 534411 -242129942 - AluSx SINE Alu -3 309 3 2355 58 7 0 chr1 534422 534713 -242129640 - AluY SINE Alu -18 293 1 1543 145 16 92 chr1 534714 535031 -242129322 - AluJb SINE Alu -17 295 3 37 23 0 0 chr1 535897 535941 -242128412 + GC_rich Low_complexity Low_complexity 1 44 0 30 77 0 0 chr1 536297 536362 -242127991 + GC_rich Low_complexity Low_complexity 1 65 0 206 179 0 15 chr1 536362 536429 -242127924 + (CCGAG)n Simple_repeat Simple_repeat 5 70 0 36 40 0 0 chr1 536589 536639 -242127714 + GC_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr1 536814 536843 -242127510 + GC_rich Low_complexity Low_complexity 1 29 0 198 143 0 0 chr1 538845 538880 -242125473 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 187 131 0 chr1 540596 540691 -242123662 + MIR SINE MIR 41 146 -83 2162 121 0 6 chr1 542918 543232 -242121121 - AluSx SINE Alu 0 312 1 2197 79 3 7 chr1 544302 544593 -242119760 - AluSc SINE Alu -19 290 1 190 233 47 0 chr1 545295 545338 -242119015 - L2 LINE L2 -2918 396 352 2263 61 10 3 chr1 549285 549578 -242114775 - AluY SINE Alu -16 295 1 293 258 24 24 chr1 549582 549706 -242114647 - L1MC5 LINE L1 -178 7783 7660 321 125 0 0 chr1 549831 549887 -242114466 + (TG)n Simple_repeat Simple_repeat 1 56 0 1507 179 52 10 chr1 550404 550695 -242113658 - AluJo SINE Alu -9 303 1 241 185 0 98 chr1 551741 551833 -242112520 - L1ME LINE L1 -414 5707 5625 2225 71 4 0 chr1 551844 552151 -242112202 - AluY SINE Alu 0 308 1 932 89 0 0 chr1 552318 552442 -242111911 - AluSq/x SINE Alu -189 124 1 1902 120 3 30 chr1 556768 557069 -242107284 - AluSg SINE Alu -17 293 1 238 143 0 48 chr1 557169 557211 -242107142 + MER5A DNA MER1_type 110 149 -40 688 176 7 44 chr1 557302 557438 -242106915 + FLAM_C SINE Alu 1 131 -2 311 247 93 33 chr1 558439 558589 -242105764 + MLT1A1 LTR MaLR 95 253 -112 263 330 6 34 chr1 559184 559426 -242104927 + (CGTG)n Simple_repeat Simple_repeat 1 235 0 2395 78 6 3 chr1 559525 559871 -242104482 - THE1A LTR MaLR -8 347 1 758 135 0 0 chr1 559871 559975 -242104378 + AluSg/x SINE Alu 108 211 -99 2308 59 7 0 chr1 561351 561641 -242102712 + AluY SINE Alu 7 298 -13 1622 181 26 29 chr1 567912 568222 -242096131 + AluJo SINE Alu 1 309 -3 321 308 22 0 chr1 568226 568317 -242096036 + GA-rich Low_complexity Low_complexity 4 96 0 2090 280 108 22 chr1 570478 571164 -242093189 + L1MC4 LINE L1 366 1184 -5537 2108 136 0 3 chr1 571164 571474 -242092879 - AluJb SINE Alu -3 309 1 2090 280 108 22 chr1 571474 571893 -242092460 + L1MC4 LINE L1 1184 1566 -5155 2230 99 3 3 chr1 572047 572359 -242091994 + AluSx SINE Alu 1 312 0 737 168 23 15 chr1 572457 572588 -242091765 + AluJb SINE Alu 1 132 -180 1986 107 3 31 chr1 572590 572909 -242091444 + AluSg SINE Alu 1 310 0 227 219 122 12 chr1 572924 573006 -242091347 + L1MC4 LINE L1 1873 1963 -4577 923 130 0 0 chr1 573133 573264 -242091089 - FLAM_C SINE Alu -2 131 1 701 196 30 60 chr1 573273 573441 -242090912 - AluSg/x SINE Alu -12 298 136 943 241 106 75 chr1 573448 573624 -242090729 + L1MC4 LINE L1 3945 4114 -2426 2162 111 3 0 chr1 573624 573921 -242090432 + AluSx SINE Alu 4 301 -11 943 241 106 75 chr1 573921 573955 -242090398 + L1MC4 LINE L1 4114 4145 -2395 2073 130 3 3 chr1 573955 574262 -242090091 + AluSx SINE Alu 1 307 -5 943 241 106 75 chr1 574262 574598 -242089755 + L1MC4 LINE L1 4145 4509 -2031 2230 256 63 20 chr1 575327 576317 -242088036 + L1MC4 LINE L1 4457 5404 -1154 2027 145 7 0 chr1 576317 576627 -242087726 + AluJb SINE Alu 1 312 0 2230 256 63 20 chr1 576627 577619 -242086734 + L1MC4 LINE L1 5404 6558 0 608 289 11 21 chr1 577831 578018 -242086335 - MER58A DNA MER1_type 0 224 40 466 272 68 0 chr1 578020 578167 -242086186 + MER5A DNA MER1_type 24 180 -9 2031 116 20 0 chr1 578312 578606 -242085747 + AluSg SINE Alu 2 301 -9 2062 122 3 0 chr1 579116 579444 -242084909 + AluSp SINE Alu 1 313 0 735 352 153 16 chr1 579835 580480 -242083873 + HAL1 LINE L1 828 1561 -946 1924 148 0 3 chr1 584042 584339 -242080014 - AluSx SINE Alu -16 296 1 791 155 8 0 chr1 585733 585862 -242078491 + AluJo SINE Alu 5 134 -178 342 358 102 20 chr1 586435 586689 -242077664 + L1MC4 LINE L1 7768 8042 0 2188 86 7 3 chr1 586945 587237 -242077116 + AluSx SINE Alu 1 293 -19 2257 100 7 0 chr1 589911 590210 -242074143 - AluSg SINE Alu -9 301 1 2667 217 68 19 chr1 590735 591056 -242073297 + L1MB3 LINE L1 5258 5562 -621 2140 129 3 0 chr1 591056 591367 -242072986 + AluSx SINE Alu 1 312 0 2084 133 0 10 chr1 591377 591686 -242072667 + AluSx SINE Alu 1 306 -6 2667 217 68 19 chr1 591686 592108 -242072245 + L1MB3 LINE L1 5570 6049 -134 720 272 22 0 chr1 592125 592353 -242072000 - L1MEd LINE L1 -3654 2475 2243 316 235 265 0 chr1 592405 592507 -242071846 + L1ME LINE L1 5312 5440 -681 1937 132 0 17 chr1 593572 593868 -242070485 - AluJb SINE Alu -21 291 1 2508 58 0 3 chr1 596171 596483 -242067870 + AluY SINE Alu 1 311 0 197 273 0 0 chr1 596732 596776 -242067577 + L2 LINE L2 3208 3251 -21 2407 90 0 0 chr1 597811 598121 -242066232 + AluSx SINE Alu 1 310 -2 1990 114 4 0 chr1 598495 598768 -242065585 - AluSx SINE Alu -38 274 1 2120 105 0 13 chr1 598780 599084 -242065269 - AluSx SINE Alu -12 300 1 260 277 142 14 chr1 599186 599327 -242065026 - L1MEd LINE L1 -5382 737 579 2231 94 0 7 chr1 599838 600147 -242064206 - AluSg1 SINE Alu -2 307 1 1990 108 49 0 chr1 600513 600801 -242063552 - AluSx SINE Alu -10 302 1 484 262 159 0 chr1 601849 601977 -242062376 + MLT1C LTR MaLR 192 298 -169 1833 242 28 74 chr1 601977 602556 -242061797 + MLT2B3 LTR ERVL 1 552 -2 484 262 159 0 chr1 602556 602660 -242061693 + MLT1C LTR MaLR 298 461 -6 215 339 0 43 chr1 605793 605979 -242058374 + G-rich Low_complexity Low_complexity 1 178 0 292 192 110 0 chr1 606458 606531 -242057822 + MLT1B LTR MaLR 5 85 -289 * 314 204 13 26 chr1 606524 606611 -242057742 + MLT1B LTR MaLR 265 375 -15 2378 49 7 0 chr1 607349 607637 -242056716 + AluY SINE Alu 6 295 -16 788 138 0 43 chr1 607994 608132 -242056221 - AluSq/x SINE Alu -180 132 1 1106 282 65 8 chr1 608594 608963 -242055390 + MLT2C1 LTR ERVL 1 390 -7 1905 162 0 9 chr1 609249 609564 -242054789 + AluJb SINE Alu 1 312 0 466 259 72 96 chr1 609790 610153 -242054200 - L1MC3 LINE L1 -67 7718 7365 365 263 66 6 chr1 614774 614942 -242049411 - MLT1A2 LTR MaLR 0 374 205 445 326 0 0 chr1 615047 615222 -242049131 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 491 312 0 0 chr1 615248 615667 -242048686 + (CCCTAA)n Simple_repeat Simple_repeat 1 419 0 413 326 11 0 chr1 615690 615868 -242048485 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 350 296 23 17 chr1 615960 616136 -242048217 + (CACCAT)n Simple_repeat Simple_repeat 2 178 0 * 467 326 0 0 chr1 616127 616302 -242048051 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 325 317 6 22 chr1 616314 616497 -242047856 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 545 181 19 9 chr1 616532 616637 -242047716 - MLT1A2 LTR MaLR -268 106 1 479 282 138 0 chr1 616637 616825 -242047528 + MLT-int LTR MaLR 1496 1709 -26 610 331 117 48 chr1 616828 616864 -242047489 + L1MC/D LINE L1 1263 1295 -5426 1796 134 15 0 chr1 616864 617133 -242047220 + AluSq SINE Alu 2 274 -39 610 331 117 48 chr1 617133 617380 -242046973 + L1MC/D LINE L1 1295 1523 -5198 2120 90 40 10 chr1 617380 617681 -242046672 + AluSq SINE Alu 1 310 -3 610 331 117 48 chr1 617681 618014 -242046339 + L1MC/D LINE L1 1523 1986 -4735 1219 134 0 0 chr1 618014 618201 -242046152 + AluSq SINE Alu 127 313 0 428 274 79 51 chr1 618421 618462 -242045891 + L1MC/D LINE L1 2255 2293 -4247 2255 122 0 0 chr1 618462 618774 -242045579 + AluSq SINE Alu 1 312 -1 428 274 79 51 chr1 618774 619220 -242045133 + L1MC/D LINE L1 2293 2725 -3815 396 0 0 0 chr1 619220 619264 -242045089 + (CA)n Simple_repeat Simple_repeat 1 44 0 428 274 79 51 chr1 619264 619341 -242045012 + L1MC/D LINE L1 2725 2792 -3748 2372 76 0 0 chr1 619341 619642 -242044711 + AluY SINE Alu 1 301 -10 428 274 79 51 chr1 619642 619682 -242044671 + L1MC/D LINE L1 2792 2829 -3711 * 801 283 93 67 chr1 619653 619682 -242044671 + L1MC/D LINE L1 4064 4091 -2449 2298 77 16 16 chr1 619682 619993 -242044360 + AluSx SINE Alu 1 311 -1 801 283 93 67 chr1 619993 620738 -242043615 + L1MC/D LINE L1 4091 4879 -1661 1906 129 11 4 chr1 620738 621017 -242043336 + AluJo SINE Alu 1 281 -31 801 283 93 67 chr1 621017 621385 -242042968 + L1MC/D LINE L1 4879 5236 -1304 260 319 56 0 chr1 621426 621570 -242042783 + L1MC/D LINE L1 5558 5709 -831 233 136 0 23 chr1 621584 621628 -242042725 + L1M LINE L1 5700 5742 -996 2246 251 67 14 chr1 621811 622501 -242041852 + MER21B LTR ERV1 14 739 -124 2386 88 0 0 chr1 623187 623494 -242040859 - AluSc SINE Alu -2 307 1 2164 102 0 7 chr1 624996 625293 -242039060 + AluSq SINE Alu 1 296 -12 204 67 0 0 chr1 625293 625323 -242039030 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 236 325 17 51 chr1 628395 628512 -242035841 - MIR SINE MIR -47 215 103 655 247 36 10 chr1 628704 629136 -242035217 + MLT1D LTR MaLR 35 505 0 189 146 0 24 chr1 629563 629604 -242034749 - L2 LINE L2 -206 3066 3027 327 365 14 28 chr1 630313 630458 -242033895 + L1MC/D LINE L1 6006 6148 -2054 2229 91 10 0 chr1 632181 632478 -242031875 + AluSq SINE Alu 1 300 -13 682 269 143 11 chr1 633575 633939 -242030414 + LTR52 LTR ERVL 2 413 -8 698 139 123 0 chr1 634158 634280 -242030073 - FRAM SINE Alu -39 137 1 1384 145 110 4 chr1 634728 634983 -242029370 + AluJo SINE Alu 1 282 -30 2347 94 0 0 chr1 635249 635558 -242028795 + AluY SINE Alu 1 309 -2 345 374 67 5 chr1 636127 636322 -242028031 - MIR SINE MIR -16 246 40 207 69 0 0 chr1 636341 636370 -242027983 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 22 35 0 0 chr1 636843 636872 -242027481 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 638537 638557 -242025796 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2224 85 0 0 chr1 638898 639230 -242025123 + AluY SINE Alu 1 332 0 2581 150 23 48 chr1 639576 640137 -242024216 + LTR10A LTR ERV1 1 547 -62 933 172 0 0 chr1 641945 642125 -242022228 + G-rich Low_complexity Low_complexity 1 180 0 405 141 0 0 chr1 642125 642196 -242022157 + (GGGGA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr1 645171 645193 -242019160 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 645938 645967 -242018386 + AT_rich Low_complexity Low_complexity 1 29 0 650 266 77 0 chr1 646171 646419 -242017934 + L1M3 LINE L1 5283 5549 -634 739 130 84 0 chr1 646421 646552 -242017801 + L1MB2 LINE L1 6029 6170 -1 2184 102 0 16 chr1 646558 646863 -242017490 + AluSq SINE Alu 1 300 -13 546 271 62 71 chr1 647651 647976 -242016377 + MLT1C LTR MaLR 5 326 -64 595 189 27 0 chr1 647978 648089 -242016264 - FLAM_A SINE Alu -5 137 24 260 261 29 0 chr1 648095 648164 -242016189 + MLT1C LTR MaLR 310 380 -10 858 266 88 10 chr1 648164 648461 -242015892 + MLT1A1 LTR MaLR 3 322 -43 195 42 0 0 chr1 648941 648965 -242015388 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 231 209 0 0 chr1 649032 649075 -242015278 + L1ME4a LINE L1 6074 6116 -5 242 358 12 0 chr1 649415 649496 -242014857 - L2 LINE L2 -7 3306 3225 476 354 54 57 chr1 650477 650514 -242013839 + L1MC4a LINE L1 6151 6187 -1621 2186 123 0 0 chr1 650514 650816 -242013537 + AluSx SINE Alu 1 302 -10 476 354 54 57 chr1 650816 651092 -242013261 + L1MC4a LINE L1 6187 6463 -1345 283 348 55 8 chr1 651251 651487 -242012866 + L1MC4 LINE L1 6780 7026 -1016 300 160 0 0 chr1 651491 651541 -242012812 + Alu SINE Alu 1 50 -253 1976 124 3 10 chr1 651541 651839 -242012514 + AluSx SINE Alu 6 301 -11 1989 124 7 13 chr1 652978 653284 -242011069 - AluJo SINE Alu -8 304 1 303 292 39 0 chr1 653555 653685 -242010668 + Charlie1 DNA MER1_type 19 153 -2608 1166 248 58 100 chr1 653691 653748 -242010605 + Charlie1 DNA MER1_type 2083 2141 -620 2159 100 0 26 chr1 653748 654057 -242010296 - AluSx SINE Alu -11 301 1 1166 248 58 100 chr1 654057 654688 -242009665 + Charlie1 DNA MER1_type 2141 2742 -19 264 281 9 18 chr1 655075 655189 -242009164 + C-rich Low_complexity Low_complexity 1 113 0 492 251 86 29 chr1 655320 655495 -242008858 - MER63A DNA MER1_type -25 185 1 1260 286 133 10 chr1 656684 657309 -242007044 + L1MC3 LINE L1 6898 7599 -186 210 357 84 32 chr1 658428 658582 -242005771 - MIR SINE MIR -76 186 25 * 438 303 118 22 chr1 658579 658757 -242005596 + MIR SINE MIR 14 208 -54 1294 266 189 36 chr1 658827 658901 -242005452 + HAL1 LINE L1 973 1034 -1473 2483 50 0 0 chr1 658901 659198 -242005155 + AluY SINE Alu 1 297 -14 1294 266 189 36 chr1 659198 660414 -242003939 + HAL1 LINE L1 1034 2461 -46 22 0 0 0 chr1 660446 660468 -242003885 + AT_rich Low_complexity Low_complexity 1 22 0 2250 99 3 0 chr1 661279 661582 -242002771 - AluSx SINE Alu -8 304 1 21 0 0 0 chr1 664069 664090 -242000263 + GC_rich Low_complexity Low_complexity 1 21 0 764 235 76 11 chr1 665270 665741 -241998612 + MER74A LTR ERVL 25 554 -4 198 186 47 0 chr1 665783 665826 -241998527 + MIR SINE MIR 28 72 -190 473 252 97 0 chr1 666014 666169 -241998184 + MER58 DNA MER1_type 64 233 -108 228 262 27 57 chr1 666778 666943 -241997410 - MIR SINE MIR -15 247 43 224 253 93 93 chr1 668541 668703 -241995650 - MIR3 SINE MIR -46 162 1 339 269 74 27 chr1 669386 669535 -241994818 + MLT1D LTR MaLR 1 156 -349 1031 279 45 5 chr1 670712 671138 -241993215 + L1MB3 LINE L1 2568 3010 -3136 715 185 31 8 chr1 671146 671276 -241993077 - AluJb SINE Alu -179 133 1 362 238 58 10 chr1 671276 671408 -241992945 + L1MB3 LINE L1 3007 3147 -2999 1673 140 4 0 chr1 671408 671658 -241992695 + AluSx SINE Alu 1 251 -61 362 238 58 10 chr1 671658 671697 -241992656 + L1MB3 LINE L1 3147 3183 -2963 * 6819 212 30 38 chr1 671688 672347 -241992006 + L1MB3 LINE L1 3489 4152 -2031 2439 59 0 3 chr1 672347 672653 -241991700 - AluY SINE Alu -6 305 1 6819 212 30 38 chr1 672653 673903 -241990450 + L1MB3 LINE L1 4152 5410 -773 2112 128 0 3 chr1 673903 674208 -241990145 + AluSx SINE Alu 1 304 -8 6819 212 30 38 chr1 674208 674437 -241989916 + L1MB3 LINE L1 5410 5639 -544 2137 131 0 0 chr1 674437 674743 -241989610 + AluJb SINE Alu 1 306 -6 6819 212 30 38 chr1 674743 675262 -241989091 + L1MB3 LINE L1 5639 6133 -50 1653 164 13 30 chr1 675262 675567 -241988786 + AluSx SINE Alu 1 300 -12 6819 212 30 38 chr1 675567 675618 -241988735 + L1MB3 LINE L1 6133 6183 0 543 271 90 24 chr1 675613 675868 -241988485 + L1MB5 LINE L1 5814 6085 -89 * 211 309 43 0 chr1 677559 677653 -241986700 + L2 LINE L2 2220 2317 -997 812 158 0 0 chr1 678956 679076 -241985277 + AluSq/x SINE Alu 1 120 -193 2138 121 3 3 chr1 679131 679438 -241984915 - AluSx SINE Alu -5 307 1 1249 166 18 79 chr1 679563 679747 -241984606 - AluJo SINE Alu -19 293 130 2032 120 3 13 chr1 679747 679883 -241984470 + AluSx SINE Alu 1 137 -175 2250 81 0 7 chr1 679883 680178 -241984175 + AluSc SINE Alu 1 293 -16 2032 120 3 13 chr1 680178 680341 -241984012 + AluSx SINE Alu 137 297 -15 1249 166 18 79 chr1 680341 680434 -241983919 - AluJo SINE Alu -182 130 33 965 199 0 0 chr1 680453 680614 -241983739 + FRAM SINE Alu 1 161 -5 2194 76 0 28 chr1 680615 680929 -241983424 + AluY SINE Alu 1 306 0 792 79 0 0 chr1 680940 681041 -241983312 + AluS SINE Alu 1 101 -212 411 94 0 0 chr1 681159 681212 -241983141 + AluSq/x SINE Alu 68 120 -192 1119 151 5 5 chr1 681267 681452 -241982901 - AluSg/x SINE Alu -5 305 121 2448 61 0 10 chr1 681994 682306 -241982047 + AluY SINE Alu 1 309 -2 2370 67 0 0 chr1 683780 684079 -241980274 + AluY SINE Alu 2 300 -11 259 281 133 10 chr1 685198 685511 -241978842 + L1ME LINE L1 5265 5613 -508 2142 205 16 5 chr1 685515 686070 -241978283 + L1MB7 LINE L1 3872 4432 -1714 258 281 0 0 chr1 686232 686296 -241978057 + C-rich Low_complexity Low_complexity 1 64 0 240 35 0 0 chr1 686346 686375 -241977978 + (CGGGGG)n Simple_repeat Simple_repeat 5 33 0 183 213 0 0 chr1 688234 688309 -241976044 + CT-rich Low_complexity Low_complexity 2 76 0 295 128 12 47 chr1 696165 696251 -241968102 + CT-rich Low_complexity Low_complexity 3 85 0 297 68 0 0 chr1 696381 696425 -241967928 + (CAA)n Simple_repeat Simple_repeat 2 45 0 509 163 0 0 chr1 696432 696512 -241967841 - AluJ/FLAM SINE Alu -232 80 1 2132 210 17 15 chr1 696525 696809 -241967544 + L1MB7 LINE L1 5315 5602 -582 2166 95 14 0 chr1 696809 697105 -241967248 + AluSp SINE Alu 1 300 -13 2132 210 17 15 chr1 697105 697344 -241967009 + L1MB7 LINE L1 5602 5839 -345 266 333 17 8 chr1 697360 697477 -241966876 + (CA)n Simple_repeat Simple_repeat 1 118 0 1726 258 77 31 chr1 704882 705536 -241958817 + L1MB3 LINE L1 5454 6137 -46 682 161 62 8 chr1 705537 705667 -241958686 + AluJo SINE Alu 1 137 -175 1852 140 3 41 chr1 705721 706035 -241958318 - AluJo SINE Alu -10 302 1 213 311 212 0 chr1 707489 707621 -241956732 + MIR SINE MIR 80 239 -23 365 341 28 17 chr1 708271 708450 -241955903 + LTR41 LTR ERVL 3 183 -590 295 311 9 0 chr1 708649 708755 -241955598 - ERVL LTR ERVL -5174 590 484 324 314 48 0 chr1 709376 709500 -241954853 + L2 LINE L2 2415 2544 -770 1327 213 161 20 chr1 709572 709981 -241954372 + MER34C LTR ERV1 36 502 -83 2125 120 7 0 chr1 711602 711910 -241952443 - AluSx SINE Alu -2 310 1 259 250 0 0 chr1 712069 712133 -241952220 + MLT1H LTR MaLR 111 174 -375 231 293 35 17 chr1 712252 712368 -241951985 + MLT1H LTR MaLR 416 533 -16 1327 164 13 4 chr1 713761 713986 -241950367 + AluJb SINE Alu 85 311 -1 2328 100 0 0 chr1 714007 714316 -241950037 + AluSq SINE Alu 1 309 -4 379 193 9 9 chr1 714614 714723 -241949630 + CT-rich Low_complexity Low_complexity 4 112 0 2247 109 0 3 chr1 714830 715141 -241949212 + AluSq SINE Alu 1 310 -3 1927 144 3 0 chr1 715275 715573 -241948780 - AluSx SINE Alu -13 299 1 2024 76 14 4 chr1 716756 717031 -241947322 - AluSx SINE Alu -14 298 21 35 71 0 0 chr1 718033 718103 -241946250 + GC_rich Low_complexity Low_complexity 1 70 0 268 293 187 8 chr1 719271 719517 -241944836 - L2 LINE L2 -9 3304 3015 472 325 97 21 chr1 719586 719809 -241944544 - MIR SINE MIR -28 180 3 284 271 75 45 chr1 720530 720663 -241943690 + MIR SINE MIR 51 187 -75 354 331 40 20 chr1 720682 720830 -241943523 - MIR SINE MIR -103 159 9 428 269 47 0 chr1 722067 722216 -241942137 - MER58C DNA MER1_type -20 195 40 241 237 41 21 chr1 722496 722593 -241941760 + L1MC5 LINE L1 7831 7929 -32 231 188 0 0 chr1 724002 724050 -241940303 + Alu SINE Alu 252 299 -3 * 435 233 27 82 chr1 724047 724193 -241940160 - MER45B DNA AcHobo -255 785 648 362 258 33 46 chr1 724370 724521 -241939832 - MER45B DNA AcHobo -823 217 69 1864 28 0 0 chr1 724877 725092 -241939261 - AluY SINE Alu -14 297 83 2219 113 6 0 chr1 725514 725825 -241938528 - AluSp SINE Alu 0 313 1 949 134 0 0 chr1 725825 725959 -241938394 - AluSq/x SINE Alu -178 135 2 309 258 28 66 chr1 727006 727188 -241937165 + (CAGGG)n Simple_repeat Simple_repeat 5 179 0 182 326 0 0 chr1 729993 730036 -241934317 - L2 LINE L2 -5 3267 3225 1588 248 71 92 chr1 732956 733690 -241930663 - L1MB7 LINE L1 0 6184 5481 1686 141 0 57 chr1 733690 733988 -241930365 + AluJb SINE Alu 15 295 -17 1588 248 71 92 chr1 733988 734365 -241929988 - L1MB7 LINE L1 -703 5481 5098 842 199 0 0 chr1 734694 734850 -241929503 - FRAM SINE Alu -20 156 1 257 362 0 0 chr1 747179 747356 -241916997 + C-rich Low_complexity Low_complexity 1 177 0 614 99 12 56 chr1 752770 752932 -241911421 + (TTCC)n Simple_repeat Simple_repeat 4 158 0 370 55 36 0 chr1 752932 752987 -241911366 + (TC)n Simple_repeat Simple_repeat 1 57 0 880 220 31 135 chr1 752987 753314 -241911039 - AluYb8 SINE Alu -1 317 25 1564 143 112 28 chr1 753325 753612 -241910741 - AluJo SINE Alu -1 311 1 428 323 99 53 chr1 754718 755245 -241909108 + L1M2 LINE L1 1499 4173 -2675 375 245 5 54 chr1 759528 759712 -241904641 + C-rich Low_complexity Low_complexity 6 180 0 239 311 83 67 chr1 767183 767495 -241896858 + L2 LINE L2 2426 2742 -572 183 353 88 48 chr1 768171 768420 -241895933 + L2 LINE L2 2520 2778 -536 2260 95 10 0 chr1 769128 769433 -241894920 + AluSc SINE Alu 1 308 -1 735 148 15 37 chr1 770516 770743 -241893610 - FLAM_C SINE Alu 0 143 6 244 183 50 0 chr1 771664 771724 -241892629 + (CTGGGG)n Simple_repeat Simple_repeat 6 68 0 234 0 0 0 chr1 773542 773568 -241890785 + (CA)n Simple_repeat Simple_repeat 1 26 0 400 132 15 15 chr1 773996 774064 -241890289 + FRAM SINE Alu 28 95 -81 2235 98 0 0 chr1 774088 774394 -241889959 - AluSx SINE Alu -2 310 5 517 351 4 9 chr1 775786 776017 -241888336 - L1MC4 LINE L1 -378 7664 7435 229 154 39 0 chr1 776165 776217 -241888136 - L1MC4 LINE L1 -1185 6857 6804 526 223 23 0 chr1 776332 776507 -241887846 + (CACG)n Simple_repeat Simple_repeat 1 179 0 330 320 0 0 chr1 776524 776624 -241887729 + (CA)n Simple_repeat Simple_repeat 1 100 0 413 306 31 12 chr1 779916 780076 -241884277 + MLT1J LTR MaLR 210 372 -139 300 326 47 0 chr1 780296 780425 -241883928 + MLT1J LTR MaLR 238 372 -139 1120 101 0 0 chr1 782066 782215 -241882138 + AluSq/x SINE Alu 1 149 -164 1703 126 0 8 chr1 782366 782621 -241881732 + AluJb SINE Alu 21 273 -39 322 250 0 0 chr1 782781 782845 -241881508 - MIR SINE MIR -96 166 103 28 0 0 0 chr1 783132 783160 -241881193 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 783327 783350 -241881003 + GC_rich Low_complexity Low_complexity 1 23 0 255 259 0 0 chr1 787334 787388 -241876965 + L2 LINE L2 3211 3264 -8 2050 119 10 10 chr1 787664 787976 -241876377 + AluSx SINE Alu 1 312 0 2947 264 114 50 chr1 788366 789338 -241875015 + L1M4 LINE L1 55 963 -5252 2136 110 7 3 chr1 789338 789662 -241874691 + AluSx SINE Alu 1 312 0 2947 264 114 50 chr1 789662 789771 -241874582 + L1M4 LINE L1 963 1064 -5151 2345 162 27 39 chr1 789771 790017 -241874336 - Tigger2a DNA MER2_type -2274 434 194 2170 96 10 0 chr1 790017 790310 -241874043 + AluSg SINE Alu 3 298 -12 2345 162 27 39 chr1 790310 790502 -241873851 - Tigger2a DNA MER2_type -2514 194 1 2947 264 114 50 chr1 790502 790703 -241873650 + L1M4 LINE L1 1064 1251 -4964 1806 94 0 12 chr1 790703 790947 -241873406 + AluSx SINE Alu 62 302 -10 2947 264 114 50 chr1 790947 791538 -241872815 + L1M4 LINE L1 1251 1803 -4412 1904 136 7 27 chr1 791538 791839 -241872514 + AluJo SINE Alu 1 295 -17 210 37 0 0 chr1 791849 791876 -241872477 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2947 264 114 50 chr1 791876 792393 -241871960 + L1M4 LINE L1 1811 2583 -3632 * 10525 24 9 0 chr1 792390 793771 -241870582 - L1PA3 LINE L1 -750 5396 4003 6801 27 1 0 chr1 793771 794550 -241869803 + L1PA3 LINE L1 5365 6152 -3 2015 136 0 38 chr1 794582 794898 -241869455 - AluSx SINE Alu -7 305 2 331 221 35 0 chr1 794899 794985 -241869368 + L1M4 LINE L1 2586 2674 -3541 387 230 119 16 chr1 795043 795169 -241869184 + L1M4 LINE L1 2631 2769 -3446 723 188 17 23 chr1 795169 795345 -241869008 + L1M4 LINE L1 3655 3829 -2386 228 67 0 0 chr1 795370 795400 -241868953 + (A)n Simple_repeat Simple_repeat 1 30 0 927 146 0 0 chr1 795400 795530 -241868823 + FLAM_C SINE Alu 1 130 -3 1365 190 90 46 chr1 795547 795710 -241868643 + L1M4 LINE L1 4942 5096 -1157 1947 107 46 7 chr1 795710 795991 -241868362 - AluSq SINE Alu -21 292 1 1365 190 90 46 chr1 795991 796253 -241868100 + L1M4 LINE L1 5096 5345 -908 2332 189 97 5 chr1 796253 796697 -241867656 - MER66B LTR ERV1 0 486 2 1365 190 90 46 chr1 796697 796845 -241867508 + L1M4 LINE L1 5345 5485 -768 2155 101 0 3 chr1 796845 797132 -241867221 + AluSc SINE Alu 7 292 -17 2109 113 0 10 chr1 797132 797443 -241866910 + AluY SINE Alu 1 308 -3 1365 190 90 46 chr1 797443 797515 -241866838 + L1M4 LINE L1 5484 5623 -630 2519 262 38 39 chr1 797533 798713 -241865640 + L1M4 LINE L1 4172 5305 -841 1262 157 0 65 chr1 798724 798985 -241865368 - AluJb SINE Alu -1 311 68 2230 74 0 17 chr1 798986 799285 -241865068 + AluY SINE Alu 1 294 -17 231 173 0 0 chr1 857463 857515 -241806838 + (CTG)n Simple_repeat Simple_repeat 3 54 0 2333 74 0 13 chr1 862905 863217 -241801136 + AluY SINE Alu 1 308 -3 579 243 32 46 chr1 863228 863446 -241800907 - L1MB2 LINE L1 -16 6155 5941 2190 88 0 36 chr1 863451 863759 -241800594 + AluSg1 SINE Alu 1 297 -12 189 0 0 0 chr1 863765 863786 -241800567 + (T)n Simple_repeat Simple_repeat 1 21 0 360 306 130 32 chr1 863915 864272 -241800081 - HAL1 LINE L1 -1301 1206 879 541 246 15 0 chr1 864398 864532 -241799821 - L1MB2 LINE L1 -350 5821 5686 962 96 75 91 chr1 864532 864572 -241799781 + MLT2D LTR ERVL 82 121 -293 2196 88 0 23 chr1 864572 864877 -241799476 + AluY SINE Alu 1 298 -13 962 96 75 91 chr1 864877 865035 -241799318 + MLT2D LTR ERVL 121 277 -137 1680 153 36 19 chr1 866666 866973 -241797380 + AluJb SINE Alu 1 312 0 2474 47 0 0 chr1 867322 867620 -241796733 - AluSx SINE Alu -14 298 1 369 210 43 43 chr1 867726 867864 -241796489 + (CCCCG)n Simple_repeat Simple_repeat 4 141 0 1621 133 10 47 chr1 868718 869019 -241795334 + AluSx SINE Alu 1 290 -22 2328 51 10 3 chr1 869019 869313 -241795040 + AluY SINE Alu 1 296 -15 187 308 77 0 chr1 870344 870422 -241793931 + L2 LINE L2 2292 2375 -939 804 164 0 46 chr1 870878 871030 -241793323 + AluJo SINE Alu 1 145 -167 2369 66 0 10 chr1 871030 871331 -241793022 + AluY SINE Alu 1 298 -13 1220 172 48 99 chr1 871332 871646 -241792707 + AluJb SINE Alu 1 298 -14 1948 155 7 0 chr1 871646 871942 -241792411 + AluSx SINE Alu 1 298 -14 436 241 17 0 chr1 871942 872025 -241792328 + L1M4 LINE L1 5610 5697 -487 2096 118 3 3 chr1 872025 872321 -241792032 + AluSx SINE Alu 1 296 -16 436 241 17 0 chr1 872321 872353 -241792000 + L1M4 LINE L1 5697 5727 -457 1091 184 5 19 chr1 872354 872560 -241791793 + AluJb SINE Alu 83 285 -27 1006 169 0 6 chr1 872560 872770 -241791583 - AluSp SINE Alu 0 328 120 1450 114 5 0 chr1 872770 872971 -241791382 - AluSg/x SINE Alu -43 269 68 603 105 28 50 chr1 873073 873254 -241791099 + GA-rich Low_complexity Low_complexity 1 177 0 902 140 7 7 chr1 874379 874522 -241789831 - FRAM SINE Alu -30 146 4 544 236 55 83 chr1 874529 874949 -241789404 - Charlie2 DNA MER1_type -87 2775 2368 2377 73 0 3 chr1 874958 875260 -241789093 + AluY SINE Alu 6 306 -5 2306 68 0 40 chr1 875263 875584 -241788769 + AluY SINE Alu 4 311 0 2280 98 0 13 chr1 875586 875902 -241788451 + AluSx SINE Alu 1 312 0 2543 52 0 3 chr1 875920 876227 -241788126 + AluY SINE Alu 1 306 -5 2076 124 3 3 chr1 876515 876821 -241787532 - AluY SINE Alu -5 306 1 2305 71 0 3 chr1 876821 877115 -241787238 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 877115 877409 -241786944 - AluSx SINE Alu -13 299 1 1028 281 49 11 chr1 877412 877879 -241786474 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 878016 878114 -241786239 - MER81 DNA DNA -15 99 1 277 307 40 7 chr1 878258 878408 -241785945 + (TATG)n Simple_repeat Simple_repeat 4 158 0 225 395 0 0 chr1 878494 878646 -241785707 + (TG)n Simple_repeat Simple_repeat 2 153 0 266 312 52 0 chr1 878652 878806 -241785547 + (TACG)n Simple_repeat Simple_repeat 4 165 0 206 311 62 0 chr1 878783 878944 -241785409 + (TATG)n Simple_repeat Simple_repeat 4 174 0 * 265 391 0 0 chr1 878865 879044 -241785309 + (TG)n Simple_repeat Simple_repeat 2 180 0 218 318 53 7 chr1 879050 879201 -241785152 + (TACG)n Simple_repeat Simple_repeat 4 161 0 * 236 317 48 0 chr1 879178 879345 -241785008 + (TATG)n Simple_repeat Simple_repeat 4 178 0 202 348 17 0 chr1 879414 879532 -241784821 + (TATG)n Simple_repeat Simple_repeat 3 122 0 180 0 0 0 chr1 879797 879817 -241784536 + (CA)n Simple_repeat Simple_repeat 2 21 0 2394 93 3 0 chr1 879865 880177 -241784176 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 880193 880502 -241783851 + AluSc SINE Alu 1 309 0 2023 134 0 10 chr1 880551 880858 -241783495 + AluJb SINE Alu 1 304 -8 275 237 99 30 chr1 881241 881372 -241782981 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 881390 881550 -241782803 + L1M4 LINE L1 4836 5008 -1138 409 278 3 0 chr1 881843 882453 -241781900 + (CA)n Simple_repeat Simple_repeat 1 612 0 230 228 0 11 chr1 882478 882570 -241781783 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 883006 883156 -241781197 + (TG)n Simple_repeat Simple_repeat 1 150 0 820 117 0 83 chr1 883882 884027 -241780326 - FLAM_C SINE Alu 0 133 1 2197 87 3 7 chr1 884703 885001 -241779352 - AluSq SINE Alu -16 297 1 258 192 0 19 chr1 885003 885055 -241779298 + L3 LINE CR1 1369 1419 -158 1291 164 18 0 chr1 885644 885869 -241778484 + AluSq SINE Alu 3 231 -82 423 348 112 38 chr1 886655 887616 -241776737 - L1MEd LINE L1 -4863 1256 224 1709 132 16 42 chr1 888415 888725 -241775628 + AluJo SINE Alu 5 306 -6 333 339 52 64 chr1 889184 889417 -241774936 - L1MC4 LINE L1 0 8042 7813 294 242 99 0 chr1 891018 891109 -241773244 - MER91B DNA MER1_type -90 100 1 636 260 17 11 chr1 898021 898202 -241766151 - MER3 DNA MER1_type -27 182 1 1355 294 69 59 chr1 898291 898842 -241765511 - L1M3 LINE L1 -743 5472 4928 2272 91 0 3 chr1 898842 899140 -241765213 + AluSq SINE Alu 3 299 -14 1355 294 69 59 chr1 899140 899479 -241764874 - L1M3 LINE L1 -1287 4928 4605 1746 157 17 10 chr1 899479 899773 -241764580 + AluJo SINE Alu 1 296 -16 1355 294 69 59 chr1 899773 899835 -241764518 - L1M3 LINE L1 -1610 4605 4545 295 145 29 14 chr1 899835 899904 -241764449 + CT-rich Low_complexity Low_complexity 3 72 0 273 281 47 0 chr1 899918 900081 -241764272 - L1M3 LINE L1 -3921 2322 2163 1609 104 0 4 chr1 900184 900415 -241763938 + AluSq SINE Alu 1 230 -83 658 141 0 0 chr1 900556 900648 -241763705 - AluS SINE Alu -220 92 1 2484 237 60 50 chr1 900682 901073 -241763280 + L1ME1 LINE L1 4528 4914 -1252 1855 141 115 12 chr1 901073 901413 -241762940 + THE1C LTR MaLR 1 375 0 2484 237 60 50 chr1 901413 901802 -241762551 + L1ME1 LINE L1 4914 5298 -868 2250 91 0 13 chr1 901802 902100 -241762253 + AluSq SINE Alu 6 299 -14 2484 237 60 50 chr1 902100 902933 -241761420 + L1ME1 LINE L1 5298 6166 0 1863 146 17 3 chr1 902982 903270 -241761083 + AluSx SINE Alu 1 292 -20 363 152 0 43 chr1 903270 903362 -241760991 + GA-rich Low_complexity Low_complexity 1 88 0 808 100 5 58 chr1 903368 903558 -241760795 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1314 147 19 0 chr1 903646 903857 -241760496 + AluJb SINE Alu 97 311 -1 403 217 70 10 chr1 903876 903996 -241760357 + AluJo SINE Alu 1 112 -190 216 111 0 0 chr1 903996 904032 -241760321 + (TA)n Simple_repeat Simple_repeat 2 37 0 403 217 70 10 chr1 904032 904159 -241760194 + AluJo SINE Alu 112 295 -7 2221 111 0 0 chr1 904266 904563 -241759790 + AluSg SINE Alu 1 297 -13 324 318 16 24 chr1 906268 906394 -241757959 + (CACG)n Simple_repeat Simple_repeat 2 126 0 327 238 0 28 chr1 906399 906580 -241757773 + (CA)n Simple_repeat Simple_repeat 1 176 0 2184 121 0 0 chr1 906585 906892 -241757461 - AluJo SINE Alu -5 307 1 1501 135 9 4 chr1 907182 907412 -241756941 - AluJb SINE Alu -81 231 1 2261 82 3 0 chr1 907532 907825 -241756528 + AluSx SINE Alu 1 294 -18 885 261 123 23 chr1 908331 908722 -241755631 + MLT1D LTR MaLR 69 498 -7 31 44 0 0 chr1 910050 910095 -241754258 + AT_rich Low_complexity Low_complexity 1 45 0 2366 61 0 3 chr1 910109 910403 -241753950 - AluY SINE Alu -16 295 3 1724 123 0 73 chr1 911493 911807 -241752546 - AluJb SINE Alu 0 430 146 2088 102 0 39 chr1 911807 911942 -241752411 + AluSq SINE Alu 2 141 -172 2405 65 3 0 chr1 911942 912248 -241752105 + AluY SINE Alu 1 307 -4 2088 102 0 39 chr1 912248 912417 -241751936 + AluSq SINE Alu 141 294 -19 1724 123 0 73 chr1 912417 912550 -241751803 - AluJb SINE Alu -284 146 5 1502 192 20 3 chr1 914742 915034 -241749319 - AluJb SINE Alu -15 297 1 2288 95 3 0 chr1 915042 915346 -241749007 - AluSp SINE Alu -8 305 1 1886 124 6 43 chr1 915412 915555 -241748798 + AluSg SINE Alu 1 148 -162 2364 84 0 0 chr1 915555 915863 -241748490 + AluY SINE Alu 1 308 -3 1886 124 6 43 chr1 915863 916041 -241748312 + AluSg SINE Alu 148 310 0 2244 95 0 0 chr1 916056 916350 -241748003 + AluSg SINE Alu 1 294 -16 188 261 185 27 chr1 919292 919476 -241744877 - L2 LINE L2 -253 3060 2848 838 121 0 35 chr1 919562 919725 -241744628 + FLAM_C SINE Alu 8 143 0 846 251 121 9 chr1 919894 920277 -241744076 + L1MC4 LINE L1 6478 6936 -1090 200 163 0 112 chr1 921249 921347 -241743006 + C-rich Low_complexity Low_complexity 1 87 0 193 104 0 42 chr1 921701 921749 -241742604 + (CGG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr1 922471 922494 -241741859 + AT_rich Low_complexity Low_complexity 1 23 0 2230 71 3 26 chr1 922501 922810 -241741543 + AluY SINE Alu 1 302 -9 1916 121 0 20 chr1 923187 923484 -241740869 - AluSx SINE Alu -21 291 1 2483 55 0 7 chr1 923656 923964 -241740389 + AluY SINE Alu 1 306 -5 2278 101 0 0 chr1 924075 924383 -241739970 - AluSq SINE Alu -5 308 1 2175 90 0 3 chr1 924531 924831 -241739522 + AluY SINE Alu 1 299 -12 1241 142 5 5 chr1 925002 925199 -241739154 + AluSp SINE Alu 1 197 -116 348 43 0 0 chr1 925199 925246 -241739107 + AluSp SINE Alu 87 133 -170 1447 176 17 7 chr1 925251 925546 -241738807 + AluSp SINE Alu 3 300 -13 315 296 102 0 chr1 925857 925965 -241738388 + MIR SINE MIR 112 230 -32 1533 159 69 28 chr1 926205 926494 -241737859 - AluJb SINE Alu 0 312 12 2270 89 0 0 chr1 926580 926873 -241737480 - AluSg SINE Alu -17 293 1 245 375 120 27 chr1 927027 927057 -241737296 - L2 LINE L2 -4 3268 3242 1721 124 79 10 chr1 927057 927347 -241737006 - AluSg SINE Alu 0 310 1 245 375 120 27 chr1 927347 927617 -241736736 - L2 LINE L2 -30 3242 2940 206 320 120 0 chr1 927638 927713 -241736640 + L2 LINE L2 3187 3270 -2 1776 125 72 0 chr1 927814 928093 -241736260 + AluSx SINE Alu 1 299 -13 498 149 20 155 chr1 928818 928918 -241735435 + Charlie1a DNA MER1_type 1 76 -2685 2066 50 54 4 chr1 928918 929195 -241735158 - AluY SINE Alu -20 291 1 498 149 20 155 chr1 929195 929242 -241735111 + Charlie1a DNA MER1_type 76 128 -1327 1794 171 0 10 chr1 929281 929591 -241734762 + AluJb SINE Alu 1 307 -5 1323 221 81 23 chr1 929599 929783 -241734570 + Charlie1a DNA MER1_type 1040 1212 -1549 2380 75 3 0 chr1 929783 930089 -241734264 - AluY SINE Alu -4 307 1 1323 221 81 23 chr1 930089 930297 -241734056 + Charlie1a DNA MER1_type 1212 1455 0 288 307 0 0 chr1 930988 931076 -241733277 - L2 LINE L2 -285 3028 2941 348 300 100 12 chr1 931292 931452 -241732901 - MIR SINE MIR -5 257 84 377 301 59 27 chr1 931825 931876 -241732477 - L1ME4a LINE L1 0 6121 6073 891 130 0 36 chr1 931876 932014 -241732339 + AluJo SINE Alu 1 133 -169 377 301 59 27 chr1 932014 932148 -241732205 - L1ME4a LINE L1 -48 6073 5930 2267 90 7 0 chr1 932196 932495 -241731858 - AluSx SINE Alu -11 301 1 296 236 285 8 chr1 932629 932752 -241731601 + MIR SINE MIR 58 214 -48 481 208 178 10 chr1 932849 932950 -241731403 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 932994 933021 -241731332 + (TC)n Simple_repeat Simple_repeat 1 27 0 799 167 146 0 chr1 933061 933205 -241731148 + AluJo SINE Alu 134 298 -14 1213 205 161 27 chr1 933285 933689 -241730664 - MLT1C LTR MaLR -2 465 8 960 195 12 0 chr1 933841 934005 -241730348 + FRAM SINE Alu 1 166 0 1876 167 0 3 chr1 934021 934333 -241730020 + AluSx SINE Alu 1 311 -1 2062 132 84 0 chr1 934344 934655 -241729698 + MER1B DNA MER1_type 1 337 0 1906 123 3 48 chr1 934700 934881 -241729472 - AluSg SINE Alu -8 302 139 2006 116 7 13 chr1 934881 935191 -241729162 - AluSx SINE Alu -4 308 1 1906 123 3 48 chr1 935191 935325 -241729028 - AluSg SINE Alu -171 139 1 987 111 0 0 chr1 935689 935824 -241728529 - AluSg/x SINE Alu -23 287 153 402 136 0 0 chr1 935824 935883 -241728470 - AluS SINE Alu -248 61 3 573 312 110 18 chr1 935926 936307 -241728046 - MLT1H LTR MaLR -3 546 131 852 161 0 0 chr1 936314 936457 -241727896 + FLAM_C SINE Alu 1 143 0 245 268 0 0 chr1 936631 936687 -241727666 - L2 LINE L2 -9 3304 3249 329 478 25 76 chr1 937236 937550 -241726803 + AluSp SINE Alu 1 298 -5 2283 72 0 3 chr1 937621 937913 -241726440 - AluY SINE Alu -20 291 1 1726 117 23 75 chr1 938791 938980 -241725373 - AluSx SINE Alu -7 305 137 2410 77 0 0 chr1 938980 939291 -241725062 - AluY SINE Alu 0 311 1 1726 117 23 75 chr1 939291 939409 -241724944 - AluSx SINE Alu -175 137 14 1629 171 0 23 chr1 939678 939977 -241724376 + AluJo SINE Alu 1 292 -20 275 226 418 0 chr1 940110 940256 -241724097 + MER20 DNA MER1_type 6 212 -7 1477 163 42 54 chr1 940404 940735 -241723618 - L1MB5 LINE L1 -10 6164 5838 2247 86 0 16 chr1 940751 941055 -241723298 - AluY SINE Alu -11 300 2 915 81 89 0 chr1 941055 941179 -241723174 - AluSq/x SINE Alu -177 135 1 1291 173 28 4 chr1 941179 941428 -241722925 - L1MB5 LINE L1 -356 5824 5570 1839 118 36 4 chr1 941725 942004 -241722349 + AluSx SINE Alu 1 288 -24 1983 135 0 3 chr1 942015 942318 -241722035 + AluSc SINE Alu 1 302 -7 207 69 0 0 chr1 942645 942674 -241721679 + (TG)n Simple_repeat Simple_repeat 2 30 0 1970 123 0 3 chr1 942674 942958 -241721395 - AluSg SINE Alu -27 283 1 1228 141 0 5 chr1 942958 943150 -241721203 - AluSx SINE Alu -11 301 111 748 110 0 0 chr1 943230 943330 -241721023 - AluSx SINE Alu -210 102 3 1888 137 0 23 chr1 943341 943640 -241720713 - AluSx SINE Alu -20 292 1 628 252 0 0 chr1 944106 944229 -241720124 - FLAM_A SINE Alu -9 124 2 2380 84 0 0 chr1 944461 944769 -241719584 + AluY SINE Alu 1 308 -3 334 237 21 0 chr1 944845 944952 -241719401 + L1MC4 LINE L1 7885 8042 0 2255 97 0 0 chr1 944986 945284 -241719069 - AluSx SINE Alu -14 298 1 296 236 285 8 chr1 945418 945541 -241718812 + MIR SINE MIR 58 214 -48 481 208 178 10 chr1 945638 945739 -241718614 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 945783 945810 -241718543 + (TC)n Simple_repeat Simple_repeat 1 27 0 799 167 146 0 chr1 945850 945994 -241718359 + FRAM SINE Alu 1 162 -14 1213 205 161 27 chr1 946074 946478 -241717875 - MLT1C LTR MaLR -2 465 8 960 195 12 0 chr1 946630 946794 -241717559 + FRAM SINE Alu 1 166 0 1876 167 0 3 chr1 946810 947122 -241717231 + AluSx SINE Alu 1 311 -1 2062 132 84 0 chr1 947133 947444 -241716909 + MER1B DNA MER1_type 1 337 0 1906 123 3 48 chr1 947489 947670 -241716683 - AluSg SINE Alu -8 302 139 2006 116 7 13 chr1 947670 947980 -241716373 - AluSx SINE Alu -4 308 1 1906 123 3 48 chr1 947980 948114 -241716239 - AluSg SINE Alu -171 139 1 987 111 0 0 chr1 948478 948613 -241715740 - AluSg/x SINE Alu -23 287 153 402 136 0 0 chr1 948613 948672 -241715681 - AluS SINE Alu -250 61 3 573 312 110 18 chr1 948715 949096 -241715257 - MLT1H LTR MaLR -3 546 131 852 161 0 0 chr1 949103 949246 -241715107 + FLAM_C SINE Alu 1 143 0 245 268 0 0 chr1 949420 949476 -241714877 - L2 LINE L2 -9 3263 3208 374 331 130 30 chr1 949935 950025 -241714328 - L2 LINE L2 -529 2785 2705 1494 184 85 0 chr1 950025 950308 -241714045 + AluJo SINE Alu 1 307 -5 374 331 130 30 chr1 950308 950586 -241713767 - L2 LINE L2 -609 2705 2380 1814 134 0 28 chr1 950850 951133 -241713220 - AluSx SINE Alu -37 275 1 309 290 98 33 chr1 951142 951346 -241713007 - L2 LINE L2 -1390 1924 1704 1803 112 40 11 chr1 951346 951623 -241712730 - AluSx SINE Alu 0 312 28 1226 166 86 43 chr1 951848 952126 -241712227 + AluJo SINE Alu 22 311 -1 2092 124 7 0 chr1 952142 952441 -241711912 + AluSx SINE Alu 1 301 -11 2217 86 3 13 chr1 953088 953401 -241710952 - AluY SINE Alu -1 310 1 2194 93 7 7 chr1 953502 953803 -241710550 - AluSg1 SINE Alu -8 301 1 2009 117 23 3 chr1 953834 954133 -241710220 + AluSq SINE Alu 1 305 -8 303 310 103 13 chr1 954338 954493 -241709860 + L1MC4a LINE L1 4780 4948 -1198 555 150 97 9 chr1 954843 954956 -241709397 + L2 LINE L2 3188 3310 -3 1191 60 142 87 chr1 954962 955033 -241709320 - MER30 DNA MER1_type 0 230 164 2083 98 21 0 chr1 955033 955319 -241709034 - AluSq SINE Alu -21 292 1 1191 60 142 87 chr1 955319 955330 -241709023 - MER30 DNA MER1_type -66 164 155 2326 76 0 0 chr1 955330 955631 -241708722 - AluY SINE Alu -10 301 1 1191 60 142 87 chr1 955631 955765 -241708588 - MER30 DNA MER1_type -75 155 1 315 287 74 0 chr1 955769 955891 -241708462 + L1MC4a LINE L1 5736 5866 -1942 1979 117 23 7 chr1 956064 956364 -241707989 + AluSq SINE Alu 1 305 -8 2087 97 0 0 chr1 956710 956988 -241707365 - AluY SINE Alu -22 289 12 2313 84 0 0 chr1 957015 957323 -241707030 - AluY SINE Alu -3 308 1 2100 93 26 10 chr1 957958 958260 -241706093 - AluSg1 SINE Alu -1 308 2 549 176 213 0 chr1 958277 958385 -241705968 - FLAM_C SINE Alu -2 131 1 1587 165 30 3 chr1 959543 959840 -241704513 + AluJb SINE Alu 1 305 -7 1213 154 45 103 chr1 960072 960383 -241703970 - AluJo SINE Alu -19 293 1 513 181 86 0 chr1 960393 960509 -241703844 - L1MC4 LINE L1 -480 7562 7437 207 0 0 0 chr1 960821 960844 -241703509 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1054 215 70 37 chr1 960857 961127 -241703226 - AluJo SINE Alu -33 279 1 1888 104 0 4 chr1 961173 961442 -241702911 - AluSx SINE Alu -10 302 35 282 98 0 44 chr1 961578 961630 -241702723 - Alu SINE Alu -9 293 251 1255 98 0 0 chr1 961646 961820 -241702533 - AluY SINE Alu -11 300 127 2214 142 6 0 chr1 961858 962211 -241702142 - L1PA16 LINE L1 -6 6160 5806 1287 47 0 35 chr1 962236 962406 -241701947 - L1PA5 LINE L1 -4 6150 5987 228 67 0 0 chr1 962406 962436 -241701917 + L1P LINE L1 4944 4973 -1173 926 58 0 50 chr1 962436 962575 -241701778 - AluY SINE Alu -179 132 1 261 270 0 16 chr1 962577 962641 -241701712 + C-rich Low_complexity Low_complexity 1 62 0 346 167 3 40 chr1 962800 962900 -241701453 - AluJo SINE Alu -167 135 70 * 1335 226 101 48 chr1 962898 962984 -241701369 - MER119 DNA MER1_type -93 490 410 2031 130 3 0 chr1 962984 963285 -241701068 + AluSx SINE Alu 5 306 -6 1335 226 101 48 chr1 963285 963635 -241700718 - MER119 DNA MER1_type -173 410 31 1152 140 0 121 chr1 964367 964632 -241699721 + Tigger7 DNA MER2_type 2258 2490 -1 2164 101 0 0 chr1 965578 965876 -241698477 + AluSc SINE Alu 1 298 -11 836 118 0 52 chr1 965878 966013 -241698340 + FLAM_C SINE Alu 3 130 -3 1269 194 15 23 chr1 966019 966282 -241698071 + AluJo SINE Alu 38 298 -14 208 233 256 0 chr1 966283 966373 -241697980 - L2 LINE L2 -1 3271 3159 2343 43 7 16 chr1 966580 966884 -241697469 - AluY SINE Alu -10 301 1 1884 139 13 7 chr1 966954 967131 -241697222 - AluSx SINE Alu -2 310 129 2160 96 0 0 chr1 967131 967423 -241696930 - AluSg SINE Alu -16 294 3 1884 139 13 7 chr1 967423 967547 -241696806 - AluSx SINE Alu -183 129 7 667 180 0 43 chr1 967547 967678 -241696675 - FLAM_A SINE Alu -175 127 1 540 326 66 30 chr1 968014 968318 -241696035 + L2 LINE L2 2999 3313 0 299 324 111 28 chr1 968933 969186 -241695167 - L2 LINE L2 -481 2833 2560 1253 147 139 48 chr1 969603 969774 -241694579 - AluJo SINE Alu -3 299 92 2203 72 0 7 chr1 969774 970065 -241694288 + AluY SINE Alu 1 289 -22 1253 147 139 48 chr1 970065 970166 -241694187 - AluJo SINE Alu -210 92 2 2188 97 3 0 chr1 970244 970542 -241693811 - AluSp SINE Alu -14 299 1 31 0 0 0 chr1 970709 970740 -241693613 + AT_rich Low_complexity Low_complexity 1 31 0 1772 74 100 41 chr1 970745 970872 -241693481 - AluSg SINE Alu -25 285 167 2323 76 3 3 chr1 970872 971175 -241693178 - AluSp SINE Alu -9 304 2 1772 74 100 41 chr1 971175 971316 -241693037 - AluSg SINE Alu -143 167 1 539 242 175 48 chr1 971382 971865 -241692488 + L1MCc LINE L1 1169 1716 -4889 2242 77 0 7 chr1 971871 972171 -241692182 + AluSp SINE Alu 1 298 -15 1055 120 25 0 chr1 972171 972329 -241692024 + AluSg/x SINE Alu 134 295 -17 649 260 116 8 chr1 972341 972591 -241691762 + L1MCc LINE L1 1735 2011 -4930 1569 177 21 0 chr1 972603 972885 -241691468 + AluJb SINE Alu 1 288 -24 398 177 76 0 chr1 972885 972964 -241691389 + L1MCc LINE L1 2276 2360 -4581 725 273 114 63 chr1 973011 973422 -241690931 - MER21B LTR ERV1 -407 456 25 9541 132 62 13 chr1 973501 973911 -241690442 - Tigger2 DNA MER2_type -4 2714 2326 1809 119 58 3 chr1 973911 974206 -241690147 - AluSq SINE Alu -2 311 1 9541 132 62 13 chr1 974206 975444 -241688909 - Tigger2 DNA MER2_type -392 2326 984 1048 170 22 27 chr1 975453 975676 -241688677 + AluJo SINE Alu 10 231 -81 189 0 0 0 chr1 975714 975735 -241688618 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1942 127 0 0 chr1 975735 976019 -241688334 - AluSx SINE Alu -28 284 1 229 196 78 0 chr1 976024 976075 -241688278 - L1MC4 LINE L1 -891 7151 7097 501 116 0 0 chr1 976176 976245 -241688108 - AluS SINE Alu -224 89 21 1777 147 6 22 chr1 976295 976608 -241687745 + AluJb SINE Alu 3 310 -2 238 188 171 145 chr1 978374 978608 -241685745 + L1MC5 LINE L1 7277 7516 -445 2333 80 0 0 chr1 979184 979484 -241684869 - AluY SINE Alu -11 300 1 595 305 52 17 chr1 979744 979993 -241684360 + MIR SINE MIR 10 261 -1 1105 200 137 46 chr1 980194 980307 -241684046 - L1ME LINE L1 -476 5690 5589 1464 169 6 66 chr1 980307 980639 -241683714 + AluJo SINE Alu 1 312 0 1105 200 137 46 chr1 980639 980904 -241683449 - L1ME LINE L1 -577 5589 5349 1555 155 32 48 chr1 980904 981076 -241683277 - AluJb SINE Alu -8 304 138 1920 141 7 0 chr1 981076 981367 -241682986 - AluSx SINE Alu -19 293 1 1555 155 32 48 chr1 981367 981503 -241682850 - AluJb SINE Alu -174 138 1 1105 200 137 46 chr1 981503 981772 -241682581 - L1ME LINE L1 -817 5349 5106 2329 81 0 0 chr1 981772 982070 -241682283 - AluY SINE Alu -13 298 1 1904 117 13 23 chr1 982070 982377 -241681976 - AluSc SINE Alu -5 304 1 1105 200 137 46 chr1 982377 982434 -241681919 - L1ME LINE L1 -1059 5107 4923 2189 98 0 0 chr1 982439 982735 -241681618 + AluSx SINE Alu 3 298 -14 358 177 42 21 chr1 982780 982876 -241681477 - L1MC4 LINE L1 0 8042 7945 2360 84 0 0 chr1 982952 983260 -241681093 - AluY SINE Alu -3 308 1 601 236 0 16 chr1 983492 983615 -241680738 + FLAM_A SINE Alu 2 122 -11 1864 137 0 23 chr1 984081 984380 -241679973 + AluSx SINE Alu 1 292 -20 742 110 0 0 chr1 984391 984491 -241679862 + AluSx SINE Alu 3 102 -210 1207 141 0 5 chr1 984571 984763 -241679590 + AluSx SINE Alu 111 301 -11 1950 123 0 3 chr1 984763 985047 -241679306 + AluSg SINE Alu 1 283 -27 207 69 0 0 chr1 985047 985076 -241679277 + (CA)n Simple_repeat Simple_repeat 2 30 0 1959 129 0 3 chr1 985412 985706 -241678647 - AluSc SINE Alu -16 293 1 1821 118 36 4 chr1 985717 985996 -241678357 - AluSx SINE Alu -24 288 1 1343 141 48 20 chr1 986293 986542 -241677811 + L1MB5 LINE L1 5570 5825 -349 909 81 89 0 chr1 986542 986666 -241677687 + AluSq/x SINE Alu 1 135 -178 2226 86 0 16 chr1 986666 986970 -241677383 + AluY SINE Alu 2 300 -11 1551 163 42 54 chr1 986986 987317 -241677036 + L1MB5 LINE L1 5838 6164 -10 277 226 418 0 chr1 987465 987611 -241676742 - MER20 DNA MER1_type -7 212 6 1578 169 0 24 chr1 987747 988043 -241676310 - AluJo SINE Alu -23 289 1 1693 114 23 75 chr1 988312 988430 -241675923 + AluSx SINE Alu 14 137 -175 2390 77 0 0 chr1 988430 988741 -241675612 + AluY SINE Alu 1 311 0 1693 114 23 75 chr1 988741 988928 -241675425 + AluSx SINE Alu 137 303 -9 2373 52 0 0 chr1 989808 990132 -241674221 + AluY SINE Alu 1 324 0 1111 241 130 26 chr1 990151 990338 -241674015 + L1MC4 LINE L1 6430 6596 -1289 438 20 0 0 chr1 990338 990389 -241673964 + (CA)n Simple_repeat Simple_repeat 1 51 0 1111 241 130 26 chr1 990389 990798 -241673555 + L1MC4 LINE L1 6596 7151 -734 1948 123 0 0 chr1 990801 991085 -241673268 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr1 991085 991106 -241673247 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 1048 170 22 27 chr1 991144 991367 -241672986 - AluJo SINE Alu -81 231 10 9557 131 62 13 chr1 991376 992614 -241671739 + Tigger2 DNA MER2_type 984 2326 -392 1809 119 58 3 chr1 992614 992909 -241671444 + AluSq SINE Alu 1 311 -2 9557 131 62 13 chr1 992909 993319 -241671034 + Tigger2 DNA MER2_type 2326 2714 -4 725 273 114 63 chr1 993398 993809 -241670544 + MER21B LTR ERV1 25 456 -407 398 177 76 0 chr1 993856 993935 -241670418 - L1MCc LINE L1 -4581 2360 2276 1569 177 21 0 chr1 993935 994217 -241670136 - AluJb SINE Alu -24 288 1 649 260 116 8 chr1 994229 994479 -241669874 - L1MCc LINE L1 -4930 2011 1735 1055 120 25 0 chr1 994491 994649 -241669704 - AluSg/x SINE Alu -17 293 132 2242 77 0 7 chr1 994649 994949 -241669404 - AluSp SINE Alu -15 298 1 539 242 175 48 chr1 994955 995438 -241668915 - L1MCc LINE L1 -4889 1534 1169 1171 57 0 0 chr1 995504 995645 -241668708 + AluSg1 SINE Alu 1 141 -168 1988 92 7 17 chr1 995645 995938 -241668415 + AluSp SINE Alu 2 291 -22 1016 148 0 0 chr1 996052 996207 -241668146 - FRAM SINE Alu -26 150 1 2032 120 0 3 chr1 996219 996511 -241667842 - AluSx SINE Alu -21 291 1 1166 170 74 48 chr1 996541 996811 -241667542 + AluJo SINE Alu 1 277 -35 2180 53 42 3 chr1 996844 997127 -241667226 + AluY SINE Alu 1 294 -17 2226 96 0 3 chr1 997353 997654 -241666699 + AluSq SINE Alu 1 300 -13 2045 123 7 0 chr1 998037 998339 -241666014 + AluSq SINE Alu 1 304 -9 309 51 0 0 chr1 998478 998517 -241665836 + (TG)n Simple_repeat Simple_repeat 2 40 0 550 208 57 0 chr1 998519 998625 -241665728 - FLAM_C SINE Alu -30 113 2 2149 102 0 0 chr1 999060 999353 -241665000 - AluSp SINE Alu -20 293 1 2166 120 0 0 chr1 1000957 1001257 -241663096 - AluSx SINE Alu -12 300 1 22 35 0 0 chr1 1001394 1001423 -241662930 + AT_rich Low_complexity Low_complexity 1 29 0 2249 71 0 3 chr1 1001508 1001805 -241662548 - AluY SINE Alu -11 300 5 1825 132 14 7 chr1 1002517 1002813 -241661540 + AluSx SINE Alu 1 298 -14 624 100 100 20 chr1 1002941 1003041 -241661312 - AluSg/x SINE Alu -22 290 183 823 178 92 12 chr1 1003373 1003536 -241660817 + AluJb SINE Alu 136 311 -1 2387 65 7 0 chr1 1004124 1004431 -241659922 - AluY SINE Alu -2 309 1 2090 59 3 56 chr1 1004770 1005094 -241659259 + AluY SINE Alu 1 307 -4 647 241 0 0 chr1 1005101 1005234 -241659119 + FLAM_C SINE Alu 1 133 0 308 159 55 131 chr1 1005234 1005271 -241659082 - Charlie5 DNA MER1_type -81 2543 2505 1312 162 170 4 chr1 1005271 1005530 -241658823 - AluJb SINE Alu 0 302 1 308 159 55 131 chr1 1005530 1005637 -241658716 - Charlie5 DNA MER1_type -119 2505 2410 2091 124 0 3 chr1 1007005 1007311 -241657042 - AluSx SINE Alu -7 305 1 1637 172 0 25 chr1 1007543 1007863 -241656490 + AluJb SINE Alu 1 312 0 2002 102 7 10 chr1 1007865 1008160 -241656193 + AluSx SINE Alu 1 294 -18 990 112 0 71 chr1 1008011 1008181 -241656172 + AluSg/x SINE Alu 147 304 -6 2483 93 0 0 chr1 1008493 1008805 -241655548 - AluSx SINE Alu 0 312 1 937 102 31 0 chr1 1008822 1008950 -241655403 - AluJo SINE Alu -176 136 5 216 0 0 0 chr1 1009056 1009080 -241655273 + (T)n Simple_repeat Simple_repeat 1 24 0 2288 226 46 20 chr1 1009873 1010457 -241653896 + L1MB5 LINE L1 5576 6174 0 2257 80 3 11 chr1 1010466 1010753 -241653600 + AluSx SINE Alu 28 312 0 242 199 117 0 chr1 1011914 1011988 -241652365 + MIR SINE MIR 45 128 -80 2397 90 3 3 chr1 1012245 1012556 -241651797 - AluY SINE Alu 0 311 1 1706 173 20 10 chr1 1012559 1012860 -241651493 - AluJo SINE Alu 0 312 9 1045 220 107 0 chr1 1013272 1013563 -241650790 + L1MA7 LINE L1 5958 6279 -12 1616 204 0 25 chr1 1013596 1013910 -241650443 + AluJo SINE Alu 3 308 -4 25 31 0 0 chr1 1013937 1013969 -241650384 + AT_rich Low_complexity Low_complexity 1 32 0 1545 126 165 11 chr1 1013974 1014235 -241650118 + AluSx SINE Alu 1 301 -11 282 56 0 0 chr1 1014955 1014991 -241649362 + (TG)n Simple_repeat Simple_repeat 2 37 0 1110 75 43 0 chr1 1015032 1015193 -241649160 - L1PA6 LINE L1 -1 6153 5986 2539 56 0 13 chr1 1015298 1015601 -241648752 - AluY SINE Alu -12 299 1 2341 83 7 7 chr1 1015672 1015972 -241648381 - AluY SINE Alu -11 300 1 2273 121 0 7 chr1 1016476 1016781 -241647572 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr1 1016781 1016804 -241647549 + (TA)n Simple_repeat Simple_repeat 1 23 0 313 175 0 0 chr1 1016818 1016875 -241647478 + Alu SINE Alu 240 296 -4 2300 125 0 0 chr1 1016896 1017201 -241647152 + AluSx SINE Alu 1 305 -7 1830 142 0 86 chr1 1017305 1017499 -241646854 - AluJo SINE Alu -7 305 149 2215 76 40 0 chr1 1017499 1017775 -241646578 + AluY SINE Alu 1 287 -24 1830 142 0 86 chr1 1017775 1017905 -241646448 - AluJo SINE Alu -163 149 9 182 310 28 42 chr1 1018199 1018270 -241646083 + L3b LINE CR1 1479 1548 -35 1582 119 169 4 chr1 1018413 1018674 -241645679 + AluSx SINE Alu 1 304 -8 2180 112 0 0 chr1 1018925 1019235 -241645118 + AluSx SINE Alu 6 315 0 2173 105 14 7 chr1 1019558 1019853 -241644500 + AluSp SINE Alu 1 297 -16 2521 71 0 7 chr1 1019855 1020165 -241644188 + AluY SINE Alu 1 308 -3 1886 136 20 33 chr1 1020370 1020671 -241643682 - AluSg SINE Alu 0 310 14 2216 141 0 0 chr1 1020867 1021172 -241643181 - AluSx SINE Alu -7 305 1 2366 92 0 3 chr1 1022022 1022316 -241642037 + AluSq SINE Alu 1 293 -20 2142 110 3 10 chr1 1022387 1022687 -241641666 - AluSq SINE Alu -15 298 1 2315 101 0 7 chr1 1022689 1022986 -241641367 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 1023533 1023554 -241640799 + AT_rich Low_complexity Low_complexity 1 21 0 2406 67 0 20 chr1 1023554 1023852 -241640501 - AluY SINE Alu -19 292 1 2319 123 0 0 chr1 1023852 1024162 -241640191 - AluSg SINE Alu 0 310 1 1377 193 64 0 chr1 1024283 1024547 -241639806 + AluJo SINE Alu 2 282 -30 400 91 0 0 chr1 1024875 1024930 -241639423 - Alu SINE Alu -253 56 2 2315 101 0 7 chr1 1024933 1025230 -241639123 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 1025777 1025798 -241638555 + AT_rich Low_complexity Low_complexity 1 21 0 2406 67 0 20 chr1 1025798 1026096 -241638257 - AluY SINE Alu -19 292 1 2412 107 0 3 chr1 1026096 1026406 -241637947 - AluSc SINE Alu 0 309 1 2027 95 64 18 chr1 1026902 1027185 -241637168 + AluSx SINE Alu 1 296 -16 1002 201 14 14 chr1 1027404 1027623 -241636730 + MER47A DNA MER2_type 28 246 -120 181 250 0 23 chr1 1027777 1027821 -241636532 + MIR SINE MIR 13 55 -207 261 248 122 40 chr1 1028596 1028714 -241635639 + L1MC/D LINE L1 5688 5810 -311 2160 113 7 0 chr1 1028864 1029155 -241635198 - AluSx SINE Alu -19 293 1 1344 143 10 0 chr1 1030130 1030333 -241634020 - AluSq SINE Alu -22 291 87 2532 41 7 3 chr1 1030344 1030638 -241633715 - AluY SINE Alu -16 295 1 1189 276 111 54 chr1 1031024 1032184 -241632169 + L1ME LINE L1 47 1269 -4811 516 330 44 66 chr1 1032201 1032452 -241631901 + L1ME LINE L1 1442 1697 -4564 2135 122 10 7 chr1 1032452 1032746 -241631607 - AluSx SINE Alu -17 295 1 516 330 44 66 chr1 1032746 1033084 -241631269 + L1ME LINE L1 1697 2018 -4243 1144 242 129 27 chr1 1033321 1033904 -241630449 + L1ME LINE L1 2253 2894 -3186 1640 103 23 0 chr1 1033904 1034118 -241630235 + AluSx SINE Alu 1 219 -93 414 200 61 17 chr1 1034331 1034446 -241629907 - L1ME LINE L1 -4700 1561 1442 1197 276 111 45 chr1 1034463 1035624 -241628729 - L1ME LINE L1 -4811 1269 47 2215 84 10 14 chr1 1036010 1036307 -241628046 + AluSx SINE Alu 1 296 -16 1344 143 10 0 chr1 1036318 1036521 -241627832 + AluSq SINE Alu 87 291 -22 2160 113 7 0 chr1 1037496 1037787 -241626566 + AluSx SINE Alu 1 293 -19 261 248 122 40 chr1 1037937 1038055 -241626298 - L1MC/D LINE L1 -311 5810 5688 181 250 0 23 chr1 1038830 1038874 -241625479 - MIR SINE MIR -207 55 13 1002 201 14 14 chr1 1039028 1039247 -241625106 - MER47A DNA MER2_type -120 246 28 2027 95 64 18 chr1 1039466 1039749 -241624604 - AluSx SINE Alu -16 296 1 2337 92 3 0 chr1 1040245 1040529 -241623824 + AluSc SINE Alu 1 285 -24 717 92 64 0 chr1 1040906 1041015 -241623338 - AluSq SINE Alu -101 212 97 2185 122 7 0 chr1 1042155 1042449 -241621904 - AluSq SINE Alu -17 296 1 2189 121 0 7 chr1 1042511 1042817 -241621536 - AluSc SINE Alu -5 304 1 2622 50 0 10 chr1 1043758 1044060 -241620293 + AluSp SINE Alu 1 299 -14 2356 86 3 10 chr1 1045521 1045822 -241618531 - AluSp SINE Alu -14 299 1 2148 127 3 0 chr1 1047180 1047480 -241616873 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1049460 1049496 -241614857 + GA-rich Low_complexity Low_complexity 5 41 0 1261 98 11 6 chr1 1050493 1050667 -241613686 + AluY SINE Alu 122 296 -15 1226 124 0 0 chr1 1050704 1050873 -241613480 - AluSg/x SINE Alu -10 302 134 2403 79 7 7 chr1 1050873 1051177 -241613176 - AluSq SINE Alu -9 304 1 2257 82 14 0 chr1 1051192 1051485 -241612868 - AluY SINE Alu -14 297 1 23 0 0 0 chr1 1051963 1051986 -241612367 + AT_rich Low_complexity Low_complexity 1 23 0 376 219 42 0 chr1 1053079 1053175 -241611178 + MIR SINE MIR 60 159 -103 2127 103 11 4 chr1 1053182 1053463 -241610890 + AluSx SINE Alu 1 283 -29 189 292 14 0 chr1 1053529 1053601 -241610752 + L2 LINE L2 2893 2965 -349 201 240 135 21 chr1 1053667 1053763 -241610590 + L2 LINE L2 3167 3273 -40 256 209 121 0 chr1 1054192 1054283 -241610070 - MER69 DNA AcHobo -3 2523 2422 1405 181 59 28 chr1 1055438 1055540 -241608813 + AluJb SINE Alu 1 98 -214 225 0 0 0 chr1 1055540 1055565 -241608788 + (CA)n Simple_repeat Simple_repeat 2 26 0 1405 181 59 28 chr1 1055565 1055750 -241608603 + AluJb SINE Alu 98 297 -15 232 274 8 43 chr1 1056557 1056674 -241607679 + C-rich Low_complexity Low_complexity 6 118 0 233 217 28 38 chr1 1056789 1056895 -241607458 + (CGG)n Simple_repeat Simple_repeat 1 105 0 1572 204 0 4 chr1 1058152 1058427 -241605926 - AluJo SINE Alu -27 285 12 2442 75 3 0 chr1 1058438 1058731 -241605622 - AluSg SINE Alu -8 302 9 344 300 10 46 chr1 1059881 1060058 -241604295 - L1MC/D LINE L1 -2443 5365 5263 2147 97 0 10 chr1 1060108 1060407 -241603946 - AluSg SINE Alu -14 296 1 283 119 25 4 chr1 1060543 1060612 -241603741 + Alu SINE Alu 1 53 -250 289 77 19 0 chr1 1060619 1060671 -241603682 + Alu SINE Alu 1 53 -250 2038 81 6 78 chr1 1060679 1060999 -241603354 + AluSp SINE Alu 1 297 -16 342 341 65 22 chr1 1061007 1061145 -241603208 - L1MCa LINE L1 -4334 2092 1949 1487 204 48 0 chr1 1061198 1061467 -241602886 + AluJo SINE Alu 1 282 -30 486 0 0 0 chr1 1061502 1061556 -241602797 + (CA)n Simple_repeat Simple_repeat 1 54 0 819 151 0 22 chr1 1061625 1061764 -241602589 - AluJo SINE Alu -176 136 1 593 135 69 129 chr1 1061767 1061792 -241602561 - L1MD3 LINE L1 -7 7988 7963 2219 100 0 3 chr1 1061792 1062092 -241602261 + AluSq SINE Alu 1 299 -14 593 135 69 129 chr1 1062092 1062172 -241602181 - L1MD3 LINE L1 -32 7963 7880 2356 76 0 3 chr1 1062172 1062475 -241601878 - AluSp SINE Alu -11 302 1 593 135 69 129 chr1 1062475 1062654 -241601699 - L1MD3 LINE L1 -115 7880 6069 666 102 0 0 chr1 1062654 1062742 -241601611 - AluJ/FLAM SINE Alu -224 88 1 2077 230 56 112 chr1 1062745 1062769 -241601584 - L1MC/D LINE L1 -1016 5130 5106 1735 191 3 3 chr1 1062769 1063072 -241601281 + AluJb SINE Alu 1 303 -9 2077 230 56 112 chr1 1063072 1063124 -241601229 - L1MC/D LINE L1 -1040 5106 5053 1939 147 3 7 chr1 1063124 1063430 -241600923 + AluJb SINE Alu 1 305 -7 2077 230 56 112 chr1 1063430 1064176 -241600177 - L1MC/D LINE L1 -1093 5053 4267 1867 128 38 7 chr1 1064176 1064466 -241599887 - AluSq SINE Alu -14 299 1 1707 84 0 0 chr1 1064474 1064713 -241599640 - AluY SINE Alu 0 308 70 2077 230 56 112 chr1 1064713 1065009 -241599344 - L1MC/D LINE L1 -1886 4260 4068 1088 141 5 40 chr1 1065029 1065228 -241599125 - AluSg/x SINE Alu 0 312 121 315 0 0 0 chr1 1065228 1065263 -241599090 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1135 143 6 6 chr1 1065263 1065438 -241598915 - AluSx SINE Alu -137 175 1 2055 139 10 0 chr1 1065475 1065654 -241598699 - AluSx SINE Alu 0 312 127 2191 102 0 13 chr1 1065654 1065968 -241598385 - AluSx SINE Alu -2 310 1 2055 139 10 0 chr1 1065968 1066097 -241598256 - AluSx SINE Alu -185 127 1 516 296 31 6 chr1 1066144 1066306 -241598047 - MER5B DNA MER1_type -9 169 4 744 233 42 108 chr1 1066415 1066666 -241597687 - MLT1B LTR MaLR 0 626 360 1413 180 19 64 chr1 1066666 1066977 -241597376 - AluJo SINE Alu -15 297 1 744 233 42 108 chr1 1066977 1067038 -241597315 - MLT1B LTR MaLR -266 360 297 2261 93 7 0 chr1 1067038 1067338 -241597015 - AluSq SINE Alu -7 306 5 744 233 42 108 chr1 1067338 1067417 -241596936 - MLT1B LTR MaLR -329 297 22 854 167 0 0 chr1 1067420 1067552 -241596801 + FLAM_C SINE Alu 2 133 0 2139 111 0 7 chr1 1068016 1068313 -241596040 + AluSx SINE Alu 1 295 -17 1113 168 0 25 chr1 1068323 1068520 -241595833 + AluJo SINE Alu 1 192 -120 189 171 0 0 chr1 1068529 1068564 -241595789 + A-rich Low_complexity Low_complexity 1 35 0 1938 76 4 19 chr1 1068792 1069055 -241595298 - AluSp SINE Alu 0 313 55 823 153 56 7 chr1 1069103 1069247 -241595106 - AluJb SINE Alu -161 151 1 1957 116 25 18 chr1 1069318 1069603 -241594750 - AluSq SINE Alu -26 287 1 29 47 0 0 chr1 1069742 1069785 -241594568 + AT_rich Low_complexity Low_complexity 1 43 0 2200 90 3 0 chr1 1070324 1070613 -241593740 - AluSx SINE Alu -22 290 1 2385 90 0 0 chr1 1071586 1071896 -241592457 - AluSx SINE Alu -2 310 1 1051 60 8 8 chr1 1071896 1072030 -241592323 - AluY SINE Alu -177 134 1 321 26 0 0 chr1 1072435 1072473 -241591880 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1925 136 0 3 chr1 1072473 1072759 -241591594 - AluSq SINE Alu -28 285 1 1571 181 14 10 chr1 1073807 1073942 -241590411 + AluJb SINE Alu 1 134 -178 2133 105 0 3 chr1 1073942 1074237 -241590116 + AluSg1 SINE Alu 1 294 -15 1571 181 14 10 chr1 1074237 1074393 -241589960 + AluJb SINE Alu 134 293 -19 410 264 86 0 chr1 1078205 1078345 -241586008 - MSTD LTR MaLR 0 396 245 324 296 50 0 chr1 1078382 1078524 -241585829 - MSTC LTR MaLR -243 153 6 2304 75 3 3 chr1 1080114 1080409 -241583944 + AluSc SINE Alu 1 295 -14 252 0 0 0 chr1 1082296 1082324 -241582029 + (GGA)n Simple_repeat Simple_repeat 2 29 0 203 188 21 0 chr1 1085562 1085610 -241578743 + (CA)n Simple_repeat Simple_repeat 2 50 0 218 132 19 0 chr1 1085648 1085701 -241578652 + (CA)n Simple_repeat Simple_repeat 1 54 0 358 314 128 16 chr1 1086649 1086837 -241577516 + L1ME LINE L1 5265 5473 -648 554 216 204 55 chr1 1086841 1087096 -241577257 + AluJo SINE Alu 5 297 -5 2229 84 0 7 chr1 1087144 1087440 -241576913 + AluY SINE Alu 1 294 -17 2126 105 0 10 chr1 1087440 1087735 -241576618 + AluSg SINE Alu 1 292 -18 2201 77 10 16 chr1 1087963 1088273 -241576080 - AluSg SINE Alu -2 308 1 26 0 0 0 chr1 1088508 1088534 -241575819 + GC_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1 1089037 1089057 -241575296 + (A)n Simple_repeat Simple_repeat 1 20 0 200 136 0 68 chr1 1089788 1089847 -241574506 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 862 270 79 41 chr1 1090599 1091018 -241573335 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1091070 1091173 -241573180 + AluSp/q SINE Alu 193 295 -18 503 219 164 0 chr1 1091174 1091195 -241573158 - L1M4 LINE L1 -786 5360 5344 2261 92 13 0 chr1 1091195 1091501 -241572852 - AluSx SINE Alu -2 310 1 503 219 164 0 chr1 1091501 1091625 -241572728 - L1M4 LINE L1 -802 5344 5191 216 158 0 0 chr1 1091629 1091667 -241572686 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 2134 110 3 0 chr1 1091667 1091958 -241572395 - AluSp SINE Alu -9 304 13 2172 122 0 0 chr1 1091967 1092261 -241572092 - AluSx SINE Alu -18 294 1 185 277 0 0 chr1 1092454 1092501 -241571852 + MIR SINE MIR 40 86 -176 1873 133 34 0 chr1 1092779 1093072 -241571281 - AluSx SINE Alu -9 303 1 2269 82 0 22 chr1 1093084 1093401 -241570952 - AluY SINE Alu -1 310 1 2001 118 17 0 chr1 1093678 1093966 -241570387 - AluSg SINE Alu -17 293 1 186 43 0 0 chr1 1093971 1093994 -241570359 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 288 272 22 11 chr1 1094018 1094110 -241570243 - L1MC4a LINE L1 -1280 6528 6436 1151 103 23 23 chr1 1094134 1094150 -241570203 + AluSg/x SINE Alu 121 136 -176 2033 118 10 3 chr1 1094150 1094455 -241569898 + AluSp SINE Alu 1 307 -6 1151 103 23 23 chr1 1094455 1094612 -241569741 + AluSg/x SINE Alu 135 294 -18 2193 85 0 3 chr1 1094612 1094907 -241569446 + AluY SINE Alu 1 294 -17 2247 103 0 0 chr1 1095127 1095429 -241568924 - AluSx SINE Alu -10 302 1 1254 149 0 0 chr1 1097730 1097925 -241566428 - AluJb SINE Alu 0 312 118 2069 121 6 6 chr1 1098401 1098714 -241565639 - AluSq SINE Alu 0 313 1 2327 79 0 3 chr1 1098714 1099017 -241565336 - AluY SINE Alu -9 302 1 2123 113 0 0 chr1 1099018 1099309 -241565044 - AluSg SINE Alu -19 291 1 868 157 0 7 chr1 1099462 1099609 -241564744 - AluJo SINE Alu -166 146 1 304 323 8 40 chr1 1099718 1099842 -241564511 + L1ME LINE L1 6 125 -5945 1324 136 5 0 chr1 1099890 1100088 -241564265 - AluSq SINE Alu -35 278 80 301 125 54 11 chr1 1100096 1100186 -241564167 - L1P5 LINE L1 -710 5441 5346 2129 125 3 0 chr1 1100718 1101029 -241563324 + AluSq SINE Alu 1 312 -1 494 312 24 0 chr1 1101165 1101335 -241563018 + MER3 DNA MER1_type 22 195 -14 2397 64 0 10 chr1 1101423 1101735 -241562618 - AluY SINE Alu -2 309 1 2143 101 0 3 chr1 1101741 1102037 -241562316 - AluSx SINE Alu -17 295 1 1613 147 8 4 chr1 1102077 1102342 -241562011 + AluSx SINE Alu 42 307 -5 1631 159 3 75 chr1 1102976 1103296 -241561057 - AluSx SINE Alu -15 297 1 2244 96 3 0 chr1 1103299 1103602 -241560751 - AluSx SINE Alu 0 312 9 2080 120 0 13 chr1 1103829 1104137 -241560216 - AluY SINE Alu -7 304 1 234 119 24 0 chr1 1104137 1104179 -241560174 - Alu SINE Alu -258 44 2 * 300 127 16 16 chr1 1104179 1104224 -241560129 - AluJ/FLAM SINE Alu -257 45 1 229 183 33 0 chr1 1104238 1104298 -241560055 - AluJ/FLAM SINE Alu -240 62 1 1483 170 50 14 chr1 1105129 1105411 -241558942 - AluJo SINE Alu -17 295 4 2072 125 0 0 chr1 1105554 1105843 -241558510 + AluSg SINE Alu 1 289 -21 311 284 50 14 chr1 1107953 1108094 -241556259 - MER65A LTR ERV1 -299 146 1 2007 132 10 0 chr1 1108119 1108414 -241555939 + AluSx SINE Alu 1 298 -14 1894 133 0 7 chr1 1108414 1108700 -241555653 + AluY SINE Alu 6 289 -22 1764 84 54 64 chr1 1108701 1108999 -241555354 + AluY SINE Alu 1 295 -16 2278 67 0 26 chr1 1109000 1109312 -241555041 + AluY SINE Alu 1 304 -7 2134 74 0 65 chr1 1109369 1109694 -241554659 + AluY SINE Alu 1 304 -7 2133 117 10 0 chr1 1110074 1110383 -241553970 + AluSx SINE Alu 1 312 0 357 332 109 10 chr1 1111357 1111559 -241552794 - MIR SINE MIR -21 241 20 658 164 94 0 chr1 1111562 1111690 -241552663 - FAM SINE Alu -45 140 1 1736 98 55 4 chr1 1111714 1111968 -241552385 - AluSg SINE Alu 0 310 44 1677 171 7 20 chr1 1111978 1112282 -241552071 - AluJb SINE Alu -11 301 2 519 147 198 0 chr1 1112991 1113107 -241551246 + Tigger1 DNA MER2_type 1 139 -2279 286 70 0 0 chr1 1113111 1113154 -241551199 - AluY SINE Alu -5 295 253 1516 110 0 5 chr1 1113155 1113364 -241550989 - AluY SINE Alu -103 208 1 213 309 12 48 chr1 1113518 1113602 -241550751 - L2 LINE L2 -2760 554 474 1218 131 159 36 chr1 1114022 1114274 -241550079 - AluY SINE Alu -17 294 12 1219 168 0 0 chr1 1114340 1114536 -241549817 + AluSg/x SINE Alu 98 293 -17 2141 102 0 17 chr1 1114538 1114832 -241549521 + AluSg SINE Alu 3 291 -19 2149 76 0 17 chr1 1114836 1115164 -241549189 + AluY SINE Alu 1 323 0 2287 80 3 3 chr1 1115318 1115619 -241548734 + AluY SINE Alu 1 301 -10 2396 60 0 7 chr1 1116297 1116597 -241547756 + AluY SINE Alu 1 298 -13 905 126 0 15 chr1 1118177 1118312 -241546041 + AluJo SINE Alu 1 133 -169 2459 70 0 3 chr1 1118388 1118701 -241545652 - AluSx SINE Alu 0 312 1 856 194 26 0 chr1 1119144 1119299 -241545054 + AluJo SINE Alu 137 295 -7 317 181 169 0 chr1 1119959 1120042 -241544311 + FLAM_A SINE Alu 33 129 -4 296 261 70 14 chr1 1120732 1120874 -241543479 + L1M4b LINE L1 779 928 -5356 * 1434 281 108 9 chr1 1120871 1121597 -241542756 + L1M4b LINE L1 1140 2035 -4347 302 286 181 4 chr1 1121677 1121936 -241542417 + L1M4b LINE L1 2173 2515 -3905 344 285 47 17 chr1 1122008 1122026 -241542327 + L1M4b LINE L1 2603 2619 -3763 1578 137 0 0 chr1 1122026 1122260 -241542093 + AluSg/x SINE Alu 76 309 -1 344 285 47 17 chr1 1122260 1122413 -241541940 + L1M4b LINE L1 2619 2779 -3603 2152 92 0 13 chr1 1122417 1122731 -241541622 + AluSg SINE Alu 1 310 0 2012 117 0 10 chr1 1123086 1123386 -241540967 - AluY SINE Alu -14 297 1 1065 189 4 25 chr1 1123386 1123630 -241540723 - L1M4c LINE L1 -4542 1842 1604 1409 152 28 24 chr1 1123631 1123881 -241540472 - AluJo SINE Alu -12 300 50 4167 199 130 29 chr1 1123882 1125330 -241539023 - L1M4c LINE L1 -4774 1610 17 448 141 10 10 chr1 1126300 1126399 -241537954 + GA-rich Low_complexity Low_complexity 2 100 0 2346 86 0 0 chr1 1126572 1126874 -241537479 - AluSx SINE Alu -10 302 1 1746 148 7 30 chr1 1128675 1128860 -241535493 - AluJo SINE Alu -21 291 114 2295 77 3 10 chr1 1128860 1129160 -241535193 + AluSg SINE Alu 1 298 -12 1746 148 7 30 chr1 1129160 1129272 -241535081 - AluJo SINE Alu -198 114 1 35 24 0 0 chr1 1134909 1134951 -241529402 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 1135113 1135147 -241529206 + GC_rich Low_complexity Low_complexity 1 34 0 376 224 24 8 chr1 1138185 1138310 -241526043 + (CA)n Simple_repeat Simple_repeat 2 128 0 236 127 18 0 chr1 1138350 1138405 -241525948 + (CA)n Simple_repeat Simple_repeat 1 56 0 346 325 101 34 chr1 1138782 1139068 -241525285 + L1ME LINE L1 757 5407 -648 357 146 0 0 chr1 1139072 1139144 -241525209 + AluJ/FLAM SINE Alu 5 59 -243 547 172 82 16 chr1 1139205 1139327 -241525026 + FLAM_A SINE Alu 1 130 -3 2229 84 0 7 chr1 1139375 1139671 -241524682 + AluY SINE Alu 1 294 -17 2145 99 0 10 chr1 1139671 1139964 -241524389 + AluSg SINE Alu 1 290 -20 2278 87 6 13 chr1 1140197 1140508 -241523845 - AluSc SINE Alu 0 309 1 1015 166 6 6 chr1 1140525 1140688 -241523665 - FRAM SINE Alu 0 166 4 1875 114 0 28 chr1 1140916 1141229 -241523124 - AluSx SINE Alu 0 305 1 2151 80 3 17 chr1 1141237 1141539 -241522814 - AluSg SINE Alu -12 298 1 26 0 0 0 chr1 1141774 1141800 -241522553 + GC_rich Low_complexity Low_complexity 1 26 0 200 136 0 68 chr1 1143063 1143122 -241521231 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 851 272 79 41 chr1 1143874 1144293 -241520060 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1144345 1144448 -241519905 + AluSp/q SINE Alu 193 295 -18 2239 95 13 0 chr1 1144470 1144776 -241519577 - AluSx SINE Alu -2 310 1 280 232 50 144 chr1 1144778 1144924 -241519429 - L1M4 LINE L1 -822 5324 5166 2131 108 7 0 chr1 1144924 1145221 -241519132 - AluSp SINE Alu -2 311 13 2251 107 0 0 chr1 1145230 1145528 -241518825 - AluSx SINE Alu -14 298 1 280 232 50 144 chr1 1145528 1145711 -241518642 - L1M4 LINE L1 -988 5158 5017 257 337 232 6 chr1 1145721 1145902 -241518451 + MIR SINE MIR 40 261 -1 2022 118 7 3 chr1 1146046 1146343 -241518010 - AluY SINE Alu -13 298 1 280 269 57 80 chr1 1146546 1146617 -241517736 - L1MC4a LINE L1 -571 7237 7166 1920 132 17 0 chr1 1146617 1146905 -241517448 - AluSg SINE Alu -17 293 1 280 269 57 80 chr1 1146905 1147008 -241517345 - L1MC4a LINE L1 -642 7166 7067 1946 146 10 0 chr1 1147117 1147238 -241517115 + AluSx SINE Alu 9 127 -185 2191 102 0 13 chr1 1147238 1147552 -241516801 + AluSx SINE Alu 1 310 -2 1946 146 10 0 chr1 1147552 1147731 -241516622 + AluSx SINE Alu 127 312 0 1135 143 6 6 chr1 1147768 1147943 -241516410 + AluSx SINE Alu 1 175 -137 315 0 0 0 chr1 1147943 1147978 -241516375 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1088 141 5 40 chr1 1147978 1148177 -241516176 + AluSg/x SINE Alu 119 310 0 2077 230 56 112 chr1 1148197 1148493 -241515860 + L1M4 LINE L1 4068 4379 -1767 1708 84 0 0 chr1 1148493 1148732 -241515621 + AluY SINE Alu 70 308 0 1867 128 38 7 chr1 1148740 1149030 -241515323 + AluSq SINE Alu 1 299 -14 2077 230 56 112 chr1 1149030 1149776 -241514577 + L1M4 LINE L1 4386 5172 -974 1939 147 3 7 chr1 1149776 1150082 -241514271 - AluJb SINE Alu -7 305 1 2077 230 56 112 chr1 1150082 1150134 -241514219 + L1M4 LINE L1 5172 5107 -1039 1735 191 3 3 chr1 1150134 1150437 -241513916 - AluJb SINE Alu -9 303 1 2077 230 56 112 chr1 1150437 1150461 -241513892 + L1M4 LINE L1 5106 5130 -1016 666 102 0 0 chr1 1150464 1150552 -241513801 + AluJ/FLAM SINE Alu 1 88 -224 532 145 81 128 chr1 1150552 1150731 -241513622 + L1MD3 LINE L1 6069 6255 -1711 2356 76 0 3 chr1 1150731 1151034 -241513319 + AluSp SINE Alu 1 302 -11 532 145 81 128 chr1 1151034 1151114 -241513239 + L1MD3 LINE L1 6255 6337 -1629 2232 97 0 3 chr1 1151114 1151414 -241512939 - AluSq SINE Alu -14 299 1 532 145 81 128 chr1 1151414 1151450 -241512903 + L1MD3 LINE L1 6337 7959 -7 2089 121 0 7 chr1 1151476 1151782 -241512571 - AluSc SINE Alu -5 304 1 2491 50 0 10 chr1 1152723 1153025 -241511328 + AluSp SINE Alu 1 299 -14 2244 86 3 10 chr1 1154486 1154787 -241509566 - AluSp SINE Alu -14 299 1 2054 127 3 0 chr1 1156145 1156445 -241507908 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1158425 1158461 -241505892 + GA-rich Low_complexity Low_complexity 5 41 0 1100 105 12 6 chr1 1159458 1159620 -241504733 + AluY SINE Alu 122 284 -27 193 253 0 80 chr1 1361306 1361381 -241302972 + L2 LINE L2 525 593 -2721 817 248 8 29 chr1 1366040 1366278 -241298075 + AluSq SINE Alu 4 236 -77 231 302 113 0 chr1 1369702 1369808 -241294545 + MER58C DNA MER1_type 77 194 -21 216 268 61 12 chr1 1372903 1372985 -241291368 - L2 LINE L2 -50 3222 3137 1432 288 31 6 chr1 1375445 1375924 -241288429 + L1MB5 LINE L1 5684 6174 0 2168 115 0 6 chr1 1375957 1376270 -241288083 + AluSq SINE Alu 1 311 -2 180 125 0 0 chr1 1378262 1378294 -241286059 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 531 251 4 92 chr1 1381901 1382140 -241282213 - L1MA10 LINE L1 0 6334 6117 309 250 0 43 chr1 1385721 1385885 -241278468 + (GGGTG)n Simple_repeat Simple_repeat 3 159 0 211 274 32 0 chr1 1386404 1386466 -241277887 + MER5B DNA MER1_type 1 64 -114 392 331 162 0 chr1 1387464 1387618 -241276735 - MER5A DNA MER1_type -6 183 5 280 358 54 18 chr1 1394475 1394696 -241269657 + MIR SINE MIR 22 250 -12 1651 148 8 4 chr1 1395328 1395584 -241268769 + AluJo SINE Alu 3 259 -53 463 169 19 32 chr1 1395605 1395759 -241268594 + GA-rich Low_complexity Low_complexity 5 156 0 1589 144 95 3 chr1 1395768 1396053 -241268300 + AluJo SINE Alu 1 311 -1 231 88 0 0 chr1 1399785 1399819 -241264534 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 247 306 0 12 chr1 1402870 1402955 -241261398 + (CA)n Simple_repeat Simple_repeat 1 84 0 498 280 0 4 chr1 1405243 1405475 -241258878 + (TG)n Simple_repeat Simple_repeat 1 230 0 239 239 182 0 chr1 1407431 1407519 -241256834 - L2 LINE L2 -5 3267 3164 201 248 272 8 chr1 1408778 1408903 -241255450 - MER5A DNA MER1_type 0 189 32 255 289 100 0 chr1 1410181 1410271 -241254082 + MIR SINE MIR 94 192 -70 226 286 26 0 chr1 1410848 1410925 -241253428 + L2 LINE L2 2896 2974 -339 973 278 58 8 chr1 1414330 1414693 -241249660 + MLT1C LTR MaLR 11 391 -76 324 274 62 18 chr1 1415295 1415408 -241248945 - MIR3 SINE MIR -10 198 81 413 146 10 29 chr1 1417174 1417277 -241247076 + CT-rich Low_complexity Low_complexity 2 102 0 2502 56 0 0 chr1 1417545 1417850 -241246503 + AluY SINE Alu 1 305 -6 307 216 15 0 chr1 1420896 1420981 -241243372 + L1MB5 LINE L1 5688 5773 -393 433 283 114 4 chr1 1421164 1421401 -241242952 + L1MB5 LINE L1 5880 6142 -32 210 357 0 0 chr1 1425118 1425258 -241239095 + (TG)n Simple_repeat Simple_repeat 2 141 0 192 210 32 16 chr1 1425311 1425373 -241238980 + L2 LINE L2 2907 2969 -303 213 24 98 0 chr1 1425945 1425986 -241238367 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 257 309 79 8 chr1 1426717 1426843 -241237510 - MIR3 SINE MIR -63 145 11 270 357 7 7 chr1 1433272 1433412 -241230941 + (TG)n Simple_repeat Simple_repeat 1 140 0 195 276 0 0 chr1 1433441 1433517 -241230836 + (TG)n Simple_repeat Simple_repeat 1 76 0 279 325 16 8 chr1 1433542 1433665 -241230688 + (TG)n Simple_repeat Simple_repeat 1 124 0 276 30 0 0 chr1 1433686 1433719 -241230634 + (TG)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chr1 1433841 1433865 -241230488 + (A)n Simple_repeat Simple_repeat 1 24 0 2426 247 61 7 chr1 1438381 1439089 -241225264 + L1MB7 LINE L1 5427 6172 -12 1421 285 42 0 chr1 1439170 1439577 -241224776 - MER82 DNA MER2_type 0 653 230 476 182 17 149 chr1 1439589 1439770 -241224583 + Tigger1 DNA MER2_type 1 157 -2261 * 647 207 173 0 chr1 1439768 1439947 -241224406 + Tigger1 DNA MER2_type 2209 2418 0 * 808 245 15 15 chr1 1439947 1440145 -241224208 - MER82 DNA MER2_type -455 198 1 1925 172 0 6 chr1 1440797 1441111 -241223242 - AluJo SINE Alu 0 312 1 2106 130 7 0 chr1 1443843 1444144 -241220209 + AluSx SINE Alu 1 303 -9 1541 189 7 0 chr1 1444337 1444633 -241219720 + MER47A DNA MER2_type 69 366 0 249 289 45 77 chr1 1449572 1449728 -241214625 - MIR3 SINE MIR -37 171 21 22 0 0 0 chr1 1450388 1450410 -241213943 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr1 1451481 1451525 -241212828 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 243 0 58 chr1 1452513 1452616 -241211737 + GA-rich Low_complexity Low_complexity 2 98 0 760 41 0 0 chr1 1453856 1453953 -241210400 + AluSc SINE Alu 212 308 -1 298 374 6 18 chr1 1455204 1455367 -241208986 + (TG)n Simple_repeat Simple_repeat 2 162 0 244 259 84 69 chr1 1455680 1455811 -241208542 - MIR3 SINE MIR -45 163 31 186 43 0 0 chr1 1461349 1461372 -241202981 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 1675 140 0 0 chr1 1462801 1463037 -241201316 - AluSx SINE Alu -76 236 1 227 345 18 0 chr1 1465507 1465617 -241198736 + (CACG)n Simple_repeat Simple_repeat 1 112 0 381 228 0 102 chr1 1466344 1466541 -241197812 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 243 262 19 56 chr1 1466554 1466711 -241197642 + (TGAA)n Simple_repeat Simple_repeat 1 151 0 2184 117 3 0 chr1 1468713 1469021 -241195332 - AluSg SINE Alu -1 309 1 253 411 47 0 chr1 1469299 1469466 -241194887 - MIR SINE MIR -37 225 44 474 165 124 0 chr1 1472195 1472292 -241192061 + MIR SINE MIR 36 144 -118 348 337 29 38 chr1 1473261 1473499 -241190854 - MIR SINE MIR -14 248 20 338 177 0 31 chr1 1473553 1473649 -241190704 + (CAT)n Simple_repeat Simple_repeat 3 95 0 1080 130 11 6 chr1 1473670 1474023 -241190330 + (CACCAT)n Simple_repeat Simple_repeat 1 356 0 258 231 0 0 chr1 1474051 1474142 -241190211 + (CAT)n Simple_repeat Simple_repeat 2 92 0 385 319 36 22 chr1 1474174 1474312 -241190041 - MIR SINE MIR -31 231 92 286 339 17 0 chr1 1475140 1475255 -241189098 + MIR SINE MIR 66 182 -80 293 200 0 0 chr1 1476837 1476892 -241187461 + MER2 DNA MER2_type 40 94 -251 216 97 0 0 chr1 1477017 1477048 -241187305 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 490 315 98 49 chr1 1477100 1477487 -241186866 - MLT1I LTR MaLR -3 406 1 196 279 16 49 chr1 1477599 1477660 -241186693 - MIR SINE MIR -12 250 192 2300 57 4 0 chr1 1477836 1478140 -241186213 - AluY SINE Alu 0 305 1 582 280 30 10 chr1 1478142 1478342 -241186011 - L1MC2 LINE L1 -16 6328 6125 420 326 71 10 chr1 1478354 1478550 -241185803 - L1MC2 LINE L1 -253 6091 5884 7950 28 5 3 chr1 1479422 1480471 -241183882 - L1PA3 LINE L1 -1018 5128 4078 7676 27 3 3 chr1 1480471 1481505 -241182848 + L1PA3 LINE L1 5116 6150 0 198 0 0 0 chr1 1481505 1481527 -241182826 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 201 74 0 0 chr1 1483391 1483418 -241180935 + (CACCT)n Simple_repeat Simple_repeat 3 29 0 231 176 39 0 chr1 1485471 1485522 -241178831 + C-rich Low_complexity Low_complexity 3 55 0 184 300 67 22 chr1 1488986 1489076 -241175277 + MER5A DNA MER1_type 61 154 -35 428 337 56 22 chr1 1490261 1490439 -241173914 - MIR SINE MIR -72 190 7 565 230 11 0 chr1 1490561 1490739 -241173614 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 273 228 0 0 chr1 1490754 1490833 -241173520 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 674 201 0 22 chr1 1490850 1491034 -241173319 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 925 174 7 0 chr1 1491046 1491338 -241173015 + (TGGA)n Simple_repeat Simple_repeat 1 294 0 930 159 3 0 chr1 1491473 1491791 -241172562 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 270 0 0 0 chr1 1491807 1491837 -241172516 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 219 139 0 0 chr1 1491838 1491874 -241172479 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 203 275 73 55 chr1 1493253 1493362 -241170991 - MIR SINE MIR -111 151 41 1108 242 109 19 chr1 1493416 1493837 -241170516 + MLT1C LTR MaLR 9 467 0 1657 225 42 9 chr1 1494849 1495297 -241169056 - L1MB3 LINE L1 -8 6175 5713 214 204 0 0 chr1 1495548 1495592 -241168761 + MIR SINE MIR 98 141 -67 21 36 0 0 chr1 1497747 1497775 -241166578 + AT_rich Low_complexity Low_complexity 1 28 0 400 321 71 12 chr1 1498228 1498396 -241165957 - MIR SINE MIR -80 182 5 205 392 39 0 chr1 1498925 1499055 -241165298 + MIR SINE MIR 105 239 -23 326 232 32 95 chr1 1499505 1499695 -241164658 + G-rich Low_complexity Low_complexity 2 179 0 220 258 62 21 chr1 1499739 1499836 -241164517 + G-rich Low_complexity Low_complexity 2 102 0 324 252 65 26 chr1 1499857 1500012 -241164341 + G-rich Low_complexity Low_complexity 2 162 0 253 340 30 0 chr1 1500837 1500937 -241163416 + MIR SINE MIR 81 183 -79 936 275 57 8 chr1 1503921 1504292 -241160061 + MLT1C LTR MaLR 75 463 -4 312 292 35 0 chr1 1505423 1505536 -241158817 + L1MB4 LINE L1 5946 6062 -118 * 518 326 26 5 chr1 1505529 1505722 -241158631 + L1MB4 LINE L1 5978 6174 -6 477 352 28 0 chr1 1506912 1507091 -241157262 + MIR SINE MIR 50 233 -29 734 178 17 23 chr1 1507779 1507953 -241156400 + MER53 DNA DNA 13 185 -4 1864 214 26 5 chr1 1508160 1508539 -241155814 + MLT1B LTR MaLR 4 390 0 333 256 53 53 chr1 1508729 1508745 -241155608 + L1M4 LINE L1 3069 3200 -2945 2003 110 23 10 chr1 1508745 1509168 -241155185 + AluSx SINE Alu 1 427 0 53 57 0 0 chr1 1509352 1509440 -241154913 + AT_rich Low_complexity Low_complexity 1 88 0 180 0 0 0 chr1 1510372 1510392 -241153961 + (T)n Simple_repeat Simple_repeat 1 20 0 319 203 14 0 chr1 1510515 1510584 -241153769 - MER53 DNA DNA -117 72 3 999 100 0 0 chr1 1515387 1515537 -241148816 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 1878 151 3 10 chr1 1517229 1517541 -241146812 - AluSx SINE Alu -2 310 1 205 325 33 0 chr1 1517589 1517663 -241146690 - MIR SINE MIR -61 147 71 183 328 76 23 chr1 1520012 1520143 -241144210 - MIR3 SINE MIR -46 162 25 462 190 27 54 chr1 1520591 1520775 -241143578 + (CA)n Simple_repeat Simple_repeat 1 179 0 210 207 29 23 chr1 1520816 1520990 -241143363 + (CA)n Simple_repeat Simple_repeat 1 175 0 437 228 47 12 chr1 1521001 1521172 -241143181 + (CA)n Simple_repeat Simple_repeat 1 177 0 350 268 48 18 chr1 1521211 1521379 -241142974 + (CA)n Simple_repeat Simple_repeat 1 173 0 2148 91 3 0 chr1 1524038 1524350 -241140003 + AluSx SINE Alu 1 313 0 319 229 135 0 chr1 1531366 1531462 -241132891 + MIR SINE MIR 35 143 -65 22 0 0 0 chr1 1536209 1536231 -241128122 + AT_rich Low_complexity Low_complexity 1 22 0 390 362 54 25 chr1 1536303 1536586 -241127767 + L1 LINE L1 4407 4697 -1449 22 0 0 0 chr1 1536995 1537017 -241127336 + AT_rich Low_complexity Low_complexity 1 22 0 224 175 16 0 chr1 1537927 1537990 -241126363 + GA-rich Low_complexity Low_complexity 1 64 0 234 128 0 0 chr1 1538335 1538374 -241125979 + (CA)n Simple_repeat Simple_repeat 1 39 0 474 228 12 20 chr1 1538414 1538769 -241125584 + (CA)n Simple_repeat Simple_repeat 1 351 0 245 105 0 0 chr1 1543273 1543311 -241121042 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 180 0 0 0 chr1 1545009 1545029 -241119324 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 205 304 0 38 chr1 1548969 1549048 -241115305 + (CACG)n Simple_repeat Simple_repeat 2 77 0 267 189 0 0 chr1 1549565 1549618 -241114735 + (TG)n Simple_repeat Simple_repeat 2 54 0 590 251 0 6 chr1 1549665 1549840 -241114513 + (CA)n Simple_repeat Simple_repeat 1 174 0 511 252 3 10 chr1 1553110 1553424 -241110929 + (TG)n Simple_repeat Simple_repeat 1 311 0 219 139 0 0 chr1 1553440 1553476 -241110877 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 760 189 0 11 chr1 1553489 1553669 -241110684 + (TG)n Simple_repeat Simple_repeat 1 178 0 441 270 79 11 chr1 1554049 1554238 -241110115 + MER20 DNA MER1_type 5 206 -13 207 200 22 0 chr1 1554306 1554351 -241110002 + CT-rich Low_complexity Low_complexity 4 49 0 180 225 12 25 chr1 1556226 1556306 -241108047 + CT-rich Low_complexity Low_complexity 2 80 0 1345 110 0 88 chr1 1558687 1558698 -241105655 - AluSg/x SINE Alu 0 312 302 298 0 0 0 chr1 1558698 1558731 -241105622 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1345 110 0 88 chr1 1558731 1558946 -241105407 - AluSg/x SINE Alu -10 302 86 249 314 0 10 chr1 1559451 1559553 -241104800 + L1M4 LINE L1 4934 5034 -1112 217 296 10 61 chr1 1559682 1559780 -241104573 + MIR SINE MIR 102 194 -68 239 313 115 0 chr1 1561113 1561209 -241103144 + L2 LINE L2 2420 2526 -788 979 209 164 21 chr1 1564337 1564667 -241099686 + MLT1B LTR MaLR 14 390 0 213 273 81 30 chr1 1565578 1565677 -241098676 + MIR SINE MIR 43 146 -62 225 94 0 0 chr1 1577873 1577905 -241086448 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2236 84 17 0 chr1 1578737 1579064 -241085289 + AluSx SINE Alu 6 337 0 1987 80 58 11 chr1 1579065 1579374 -241084979 + AluY SINE Alu 1 311 0 27 0 0 0 chr1 1579504 1579531 -241084822 + AT_rich Low_complexity Low_complexity 1 27 0 266 211 0 60 chr1 1580513 1580646 -241083707 + (GGCTG)n Simple_repeat Simple_repeat 1 125 0 291 329 90 7 chr1 1582178 1582333 -241082020 - MIR SINE MIR -83 179 12 24 0 0 0 chr1 1592435 1592459 -241071894 + AT_rich Low_complexity Low_complexity 1 24 0 270 81 0 0 chr1 1593366 1593403 -241070950 + (CA)n Simple_repeat Simple_repeat 2 38 0 195 292 0 15 chr1 1593516 1593581 -241070772 + MIR SINE MIR 80 143 -119 24 53 0 0 chr1 1597924 1597962 -241066391 + GC_rich Low_complexity Low_complexity 1 38 0 214 235 0 0 chr1 1598171 1598222 -241066131 + C-rich Low_complexity Low_complexity 1 51 0 99 82 0 0 chr1 1598278 1598510 -241065843 + GC_rich Low_complexity Low_complexity 1 232 0 225 0 0 0 chr1 1598733 1598758 -241065595 + (CCG)n Simple_repeat Simple_repeat 2 26 0 211 209 30 30 chr1 1599270 1599337 -241065016 + C-rich Low_complexity Low_complexity 4 70 0 203 250 19 0 chr1 1602380 1602432 -241061921 + CT-rich Low_complexity Low_complexity 2 54 0 22 0 0 0 chr1 1604030 1604052 -241060301 + GC_rich Low_complexity Low_complexity 1 22 0 216 189 0 0 chr1 1604377 1604414 -241059939 + MIR SINE MIR 108 144 -118 314 328 38 8 chr1 1607180 1607311 -241057042 - MIR SINE MIR -100 162 28 1198 177 0 0 chr1 1608625 1608845 -241055508 + L1MB8 LINE L1 5764 5983 -195 966 284 156 16 chr1 1609023 1609466 -241054887 - L2 LINE L2 0 3313 2809 1450 213 25 50 chr1 1609470 1609902 -241054451 + MLT1D LTR MaLR 89 503 -2 1003 265 58 11 chr1 1610246 1610605 -241053748 - HAL1 LINE L1 -895 1612 1237 293 282 261 31 chr1 1610610 1610936 -241053417 - HAL1 LINE L1 -1544 963 563 416 315 164 42 chr1 1610946 1611086 -241053267 - HAL1 LINE L1 -2046 461 339 2089 103 10 10 chr1 1611086 1611378 -241052975 - AluSq SINE Alu -21 292 1 416 315 164 42 chr1 1611378 1611646 -241052707 - HAL1 LINE L1 -2168 339 3 377 300 42 17 chr1 1611928 1612048 -241052305 + L1ME4a LINE L1 5978 6100 -21 1102 145 0 16 chr1 1612087 1612273 -241052080 + AluJb SINE Alu 129 311 -1 1079 263 138 5 chr1 1612723 1613107 -241051246 - L1MB4 LINE L1 0 6180 5746 2544 113 17 87 chr1 1614183 1614643 -241049710 + MSTA LTR MaLR 1 428 0 335 306 9 9 chr1 1615422 1615530 -241048823 + L2 LINE L2 3206 3313 0 628 172 22 21 chr1 1615546 1615827 -241048526 + (TGGA)n Simple_repeat Simple_repeat 1 281 0 919 160 7 19 chr1 1615869 1616138 -241048215 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 755 189 15 15 chr1 1616152 1616685 -241047668 + (TGGG)n Simple_repeat Simple_repeat 1 533 0 261 243 0 0 chr1 1616701 1616771 -241047582 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 3202 217 29 41 chr1 1618742 1619798 -241044555 - L1MB4 LINE L1 -893 5253 4210 2198 253 44 6 chr1 1619800 1620877 -241043476 - L1MB4 LINE L1 -2698 3448 2128 1577 264 67 32 chr1 1620884 1621828 -241042525 - L1MEc LINE L1 -4287 2109 1133 712 174 0 43 chr1 1621872 1622010 -241042343 - FLAM_C SINE Alu -1 132 1 6599 156 56 48 chr1 1622160 1622690 -241041663 + Tigger1 DNA MER2_type 936 1460 -958 2441 138 40 0 chr1 1622690 1623061 -241041292 + L1PA15 LINE L1 5777 6162 -3 6599 156 56 48 chr1 1623061 1623534 -241040819 + Tigger1 DNA MER2_type 1460 1928 -490 1753 179 3 0 chr1 1623534 1623830 -241040523 - AluJo SINE Alu -15 297 1 6599 156 56 48 chr1 1623830 1624151 -241040202 + Tigger1 DNA MER2_type 1928 2277 -141 2064 129 10 0 chr1 1624151 1624461 -241039892 - AluSq SINE Alu 0 313 1 6599 156 56 48 chr1 1624461 1624605 -241039748 + Tigger1 DNA MER2_type 2277 2418 0 338 323 76 66 chr1 1624751 1624949 -241039404 + L1ME LINE L1 3595 3794 -2352 1028 154 0 0 chr1 1624969 1625125 -241039228 + AluJo SINE Alu 3 158 -154 186 209 0 0 chr1 1625257 1625300 -241039053 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 268 344 62 43 chr1 1625453 1625518 -241038835 + L1ME LINE L1 3784 3846 -2300 2064 128 6 6 chr1 1625518 1625830 -241038523 + AluSx SINE Alu 1 312 0 268 344 62 43 chr1 1625830 1626518 -241037835 + L1ME LINE L1 3846 4559 -1587 1010 215 10 0 chr1 1626518 1626723 -241037630 - L1MA4 LINE L1 -7 6293 6087 268 344 62 43 chr1 1626723 1626879 -241037474 + L1ME LINE L1 4559 4711 -1435 343 299 49 14 chr1 1627311 1627455 -241036898 + L1ME LINE L1 5364 5512 -654 226 285 58 7 chr1 1627739 1627876 -241036477 + (CA)n Simple_repeat Simple_repeat 1 144 0 * 251 248 57 25 chr1 1627805 1627962 -241036391 + (CATA)n Simple_repeat Simple_repeat 1 162 0 * 400 217 59 19 chr1 1627893 1628208 -241036145 + (CA)n Simple_repeat Simple_repeat 1 327 0 212 146 0 42 chr1 1628365 1628413 -241035940 + (GGGGA)n Simple_repeat Simple_repeat 1 46 0 306 331 64 25 chr1 1629294 1629451 -241034902 - MIR SINE MIR -92 170 8 308 248 51 15 chr1 1629758 1629895 -241034458 - LTR37A LTR ERV1 -1 425 284 197 343 97 22 chr1 1630343 1630477 -241033876 + L2 LINE L2 3103 3246 -26 544 158 20 82 chr1 1631025 1631171 -241033182 - MER31B LTR ERV1 -295 171 35 296 235 15 0 chr1 1633712 1633780 -241030573 - L1MC5 LINE L1 -918 7043 6975 653 220 147 81 chr1 1634304 1634686 -241029667 - MLT2D LTR ERVL -2 412 6 2410 59 0 0 chr1 1640921 1641210 -241023143 - AluY SINE Alu -22 289 1 1103 66 0 0 chr1 1641212 1641348 -241023005 - AluSq/x SINE Alu -177 136 1 414 121 0 0 chr1 1641349 1641415 -241022938 + THE1B LTR MaLR 299 364 0 368 242 66 0 chr1 1642444 1642552 -241021801 - MLT1I LTR MaLR -243 166 53 273 200 15 0 chr1 1642596 1642661 -241021692 + MER53 DNA DNA 99 164 -25 2655 168 7 2 chr1 1642661 1643083 -241021270 - MSTB LTR MaLR 0 426 3 9352 165 21 24 chr1 1643086 1644741 -241019612 - MSTB-int LTR MaLR -1 1650 1 2686 158 7 19 chr1 1644741 1645172 -241019181 - MSTB LTR MaLR 0 426 1 531 332 23 9 chr1 1647593 1647807 -241016546 - HERV16 LTR ERVL -2657 2339 2123 362 275 165 16 chr1 1648646 1648828 -241015525 + MIR SINE MIR 30 238 -24 1735 157 59 0 chr1 1649647 1649934 -241014419 - AluJo SINE Alu -8 304 1 192 409 0 0 chr1 1650379 1650472 -241013881 + L2 LINE L2 3146 3238 -75 864 219 0 13 chr1 1650654 1650975 -241013378 - MLT1B LTR MaLR -28 362 5 253 326 131 20 chr1 1651934 1652179 -241012174 + LTR16A1 LTR ERVL 1 272 -185 306 355 23 61 chr1 1652398 1652612 -241011741 + MIR SINE MIR 12 217 -45 620 295 52 44 chr1 1653629 1654015 -241010338 + L1MEd LINE L1 32 420 -5699 344 220 18 37 chr1 1654074 1654183 -241010170 + L1M4 LINE L1 14 120 -6422 266 264 28 0 chr1 1654190 1654262 -241010091 + ERVL LTR ERVL 3784 3857 -1907 1547 176 105 14 chr1 1654294 1654657 -241009696 + MSTA LTR MaLR 6 401 -27 435 291 34 22 chr1 1654794 1654973 -241009380 + L1M4 LINE L1 2630 2810 -3834 837 167 0 7 chr1 1657636 1657774 -241006579 + AluJb SINE Alu 160 296 -16 23 33 0 0 chr1 1661454 1661484 -241002869 + GC_rich Low_complexity Low_complexity 1 30 0 206 191 26 70 chr1 1662876 1662991 -241001362 + (CACAC)n Simple_repeat Simple_repeat 1 110 0 388 111 25 0 chr1 1663895 1663976 -241000377 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 526 263 186 43 chr1 1663998 1664321 -241000032 + MLT1F1 LTR MaLR 171 539 -28 814 271 31 68 chr1 1664540 1664924 -240999429 + MLT1B LTR MaLR 9 378 -12 509 278 17 52 chr1 1669459 1669632 -240994721 - MIR SINE MIR -76 186 20 209 333 48 48 chr1 1673496 1673622 -240990731 + MER91B DNA MER1_type 30 155 -35 1479 284 103 8 chr1 1673852 1674318 -240990035 - L1M4 LINE L1 -1326 4803 4383 1985 142 3 0 chr1 1674318 1674606 -240989747 + AluSx SINE Alu 1 289 -23 1479 284 103 8 chr1 1674606 1675052 -240989301 - L1M4 LINE L1 -1746 4383 3804 318 283 51 74 chr1 1675056 1675659 -240988694 - L1MEd LINE L1 -3756 2373 1819 413 278 56 48 chr1 1675700 1675917 -240988436 - L1MEd LINE L1 -4590 1720 1506 2526 101 27 27 chr1 1675917 1676292 -240988061 + THE1C LTR MaLR 1 375 0 10403 103 45 39 chr1 1676292 1677863 -240986490 + THE1C-int LTR MaLR 1 1580 0 2356 118 21 24 chr1 1677865 1678239 -240986114 + THE1C LTR MaLR 3 375 0 413 278 56 48 chr1 1678239 1678409 -240985944 - L1MEd LINE L1 -4804 1506 1326 795 292 42 132 chr1 1678571 1679125 -240985228 - L1MEd LINE L1 -5036 1093 601 323 127 16 0 chr1 1679862 1679925 -240984428 + GA-rich Low_complexity Low_complexity 2 65 0 895 207 93 21 chr1 1682059 1682339 -240982014 - MLT1C LTR MaLR -162 305 6 249 168 84 28 chr1 1682744 1682887 -240981466 + (CAGCC)n Simple_repeat Simple_repeat 5 155 0 448 258 110 12 chr1 1684274 1684437 -240979916 + MER45C DNA AcHobo 42 220 -733 22 35 0 0 chr1 1684996 1685025 -240979328 + AT_rich Low_complexity Low_complexity 1 29 0 317 208 28 0 chr1 1685885 1685957 -240978396 - MER69 DNA AcHobo -3 2523 2450 411 308 18 0 chr1 1687311 1687480 -240976873 + (CA)n Simple_repeat Simple_repeat 1 172 0 276 328 5 43 chr1 1687416 1687602 -240976751 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 378 242 4 0 chr1 1687658 1687937 -240976416 + (CA)n Simple_repeat Simple_repeat 1 280 0 468 239 6 10 chr1 1687974 1688284 -240976069 + (CA)n Simple_repeat Simple_repeat 1 308 0 290 227 127 9 chr1 1688331 1688441 -240975912 + MLT1A2 LTR MaLR 181 303 -71 281 240 13 0 chr1 1688453 1688528 -240975825 + (CA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr1 1689249 1689271 -240975082 + AT_rich Low_complexity Low_complexity 1 22 0 1532 155 85 7 chr1 1689278 1689549 -240974804 + AluJo SINE Alu 3 294 -18 280 281 21 42 chr1 1690504 1690600 -240973753 - MIR3 SINE MIR -20 188 95 454 299 24 6 chr1 1690968 1691143 -240973210 - MIR SINE MIR -63 145 11 1113 276 97 11 chr1 1691231 1691694 -240972659 + HAL1 LINE L1 1337 1839 -668 540 283 251 35 chr1 1691852 1692240 -240972113 + L1M2 LINE L1 1666 3127 -82 394 282 0 15 chr1 1692400 1692531 -240971822 - HAL1 LINE L1 -753 1754 1626 330 294 5 0 chr1 1694300 1694514 -240969839 + (TG)n Simple_repeat Simple_repeat 1 215 0 234 322 0 0 chr1 1694550 1694730 -240969623 + (TG)n Simple_repeat Simple_repeat 1 180 0 274 314 0 4 chr1 1694744 1694974 -240969379 + (TG)n Simple_repeat Simple_repeat 1 228 0 837 236 47 79 chr1 1697955 1698336 -240966017 - MLT1B LTR MaLR -21 369 1 245 326 139 0 chr1 1699910 1700039 -240964314 + MIR SINE MIR 46 192 -70 258 314 68 8 chr1 1701240 1701358 -240962995 + L2 LINE L2 3143 3267 -5 306 255 0 0 chr1 1702592 1702686 -240961667 + (TG)n Simple_repeat Simple_repeat 1 94 0 439 227 37 37 chr1 1702905 1703016 -240961337 + MER53 DNA DNA 1 114 -75 2259 160 24 3 chr1 1703016 1703398 -240960955 + MLT1B LTR MaLR 1 390 0 439 227 37 37 chr1 1703398 1703449 -240960904 + MER53 DNA DNA 113 163 -26 1080 147 0 0 chr1 1705569 1706313 -240958040 + (CAGCC)n Simple_repeat Simple_repeat 1 744 0 942 156 23 61 chr1 1707678 1707941 -240956412 - MLT1D LTR MaLR -206 299 47 532 381 34 19 chr1 1709349 1709669 -240954684 + L1MB5 LINE L1 5677 6001 -173 728 242 4 30 chr1 1709813 1710044 -240954309 + L1MB8 LINE L1 5948 6172 -6 246 333 28 0 chr1 1710224 1710332 -240954021 + MER53 DNA DNA 22 132 -57 289 172 16 0 chr1 1710385 1710449 -240953904 - MER53 DNA DNA -124 65 1 404 220 22 0 chr1 1711938 1712029 -240952324 + MIR SINE MIR 28 120 -142 1228 143 5 35 chr1 1713769 1713972 -240950381 + MER107 DNA MER1_type 1 197 0 448 259 125 14 chr1 1714760 1715101 -240949252 + MLT1C LTR MaLR 1 451 -16 268 400 0 7 chr1 1716323 1716463 -240947890 + (TG)n Simple_repeat Simple_repeat 1 139 0 227 250 0 30 chr1 1716532 1716664 -240947689 + (TG)n Simple_repeat Simple_repeat 1 128 0 248 239 32 13 chr1 1716716 1716871 -240947482 + (TG)n Simple_repeat Simple_repeat 1 158 0 386 250 0 22 chr1 1716904 1717088 -240947265 + (TG)n Simple_repeat Simple_repeat 1 180 0 373 240 11 17 chr1 1717105 1717284 -240947069 + (TG)n Simple_repeat Simple_repeat 1 178 0 785 243 0 0 chr1 1720278 1720426 -240943927 + FRAM SINE Alu 4 151 -15 196 248 0 16 chr1 1720811 1720936 -240943417 + (CA)n Simple_repeat Simple_repeat 1 123 0 233 320 96 6 chr1 1723327 1723483 -240940870 - MLT1K LTR MaLR -330 258 89 757 211 42 0 chr1 1724698 1724888 -240939465 - MLT1B LTR MaLR -78 312 115 428 190 117 15 chr1 1724976 1725099 -240939254 - MLT1B LTR MaLR -252 138 28 1347 266 59 11 chr1 1725818 1726291 -240938062 - L1MC1 LINE L1 0 6333 5838 262 250 0 0 chr1 1728035 1728095 -240936258 + GA-rich Low_complexity Low_complexity 3 62 0 209 269 29 0 chr1 1730156 1730260 -240934093 + (CACAC)n Simple_repeat Simple_repeat 5 111 0 850 285 79 25 chr1 1730619 1731061 -240933292 - MLT1D LTR MaLR 0 505 40 424 319 30 0 chr1 1731691 1731857 -240932496 + ERVL LTR ERVL 2145 2315 -3449 600 271 79 5 chr1 1731964 1732167 -240932186 - MER20 DNA MER1_type -1 218 1 576 225 60 161 chr1 1733651 1733742 -240930611 + MLT1B LTR MaLR 1 100 -290 294 29 0 0 chr1 1733742 1733777 -240930576 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 576 225 60 161 chr1 1733777 1733788 -240930565 + MLT1B LTR MaLR 100 111 -279 1981 136 0 0 chr1 1733788 1734067 -240930286 - AluSx SINE Alu -33 279 1 576 225 60 161 chr1 1734067 1734380 -240929973 + MLT1B LTR MaLR 111 375 -15 756 339 61 24 chr1 1734949 1735536 -240928817 + ERVL LTR ERVL 4768 5376 -388 202 290 0 19 chr1 1735569 1735676 -240928677 + (TG)n Simple_repeat Simple_repeat 1 105 0 518 239 6 17 chr1 1735689 1735869 -240928484 + (TG)n Simple_repeat Simple_repeat 1 178 0 489 249 0 17 chr1 1735926 1736107 -240928246 + (TG)n Simple_repeat Simple_repeat 1 178 0 517 216 0 28 chr1 1736168 1736349 -240928004 + (TG)n Simple_repeat Simple_repeat 1 176 0 1286 278 34 9 chr1 1737474 1737917 -240926436 + MLT1C LTR MaLR 4 457 -10 417 317 11 11 chr1 1739158 1739338 -240925015 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 132 38 0 chr1 1739602 1739655 -240924698 + (GGGTG)n Simple_repeat Simple_repeat 4 58 0 219 294 95 8 chr1 1739800 1739926 -240924427 + MIR3 SINE MIR 65 201 -7 348 257 73 0 chr1 1741288 1741397 -240922956 - MER53 DNA DNA -72 117 1 1165 254 69 8 chr1 1741652 1742042 -240922311 + MLT1C LTR MaLR 9 422 -45 248 209 60 0 chr1 1742079 1742146 -240922207 + MLT1C LTR MaLR 435 505 0 263 336 9 9 chr1 1742714 1742830 -240921523 + (CACCC)n Simple_repeat Simple_repeat 3 118 0 428 134 52 22 chr1 1743424 1743558 -240920795 + GA-rich Low_complexity Low_complexity 4 141 0 370 302 81 75 chr1 1751146 1751504 -240912849 - L2 LINE L2 -7 3265 2906 240 341 28 50 chr1 1754272 1754451 -240909902 + L2 LINE L2 2996 3170 -102 239 330 19 29 chr1 1755056 1755159 -240909194 - MIR SINE MIR -128 134 33 2046 119 7 3 chr1 1756525 1756819 -240907534 - AluSx SINE Alu -17 295 1 1180 44 11 33 chr1 1756835 1757018 -240907335 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 273 283 0 53 chr1 1762480 1762575 -240901778 - MIR SINE MIR -62 146 60 197 340 0 0 chr1 1764715 1764765 -240899588 + L2 LINE L2 3223 3272 0 295 356 8 8 chr1 1764867 1764985 -240899368 + (CACG)n Simple_repeat Simple_repeat 4 121 0 334 279 6 57 chr1 1767986 1768144 -240896209 + (CGTG)n Simple_repeat Simple_repeat 2 151 0 668 257 125 64 chr1 1769487 1769895 -240894458 - MLT1C LTR MaLR -26 441 9 227 306 7 0 chr1 1770752 1770899 -240893454 + (CAGC)n Simple_repeat Simple_repeat 4 151 0 236 242 16 0 chr1 1771320 1771382 -240892971 + G-rich Low_complexity Low_complexity 3 65 0 630 325 59 6 chr1 1772716 1773036 -240891317 - MLT1E LTR MaLR -164 429 93 690 106 35 7 chr1 1774272 1774414 -240889939 + CT-rich Low_complexity Low_complexity 1 146 0 1070 296 41 11 chr1 1774414 1774856 -240889497 - L1MC3 LINE L1 -727 7058 6604 282 203 0 14 chr1 1775550 1775619 -240888734 - L1MD3 LINE L1 -385 7610 7543 * 287 207 11 35 chr1 1775616 1775703 -240888650 + L1MD3 LINE L1 7911 7995 0 231 261 0 0 chr1 1776921 1776967 -240887386 + polypurine Low_complexity Low_complexity 3 48 0 1541 165 83 0 chr1 1780011 1780277 -240884076 - AluJo SINE Alu -21 291 4 1149 235 74 6 chr1 1780324 1780647 -240883706 + L1ME2 LINE L1 5451 5795 -371 940 255 18 24 chr1 1781811 1782140 -240882213 + L1ME2 LINE L1 5785 6111 -53 1909 206 18 8 chr1 1782149 1782547 -240881806 - L1MB3 LINE L1 -1 6182 5781 888 189 65 9 chr1 1782552 1782769 -240881584 - Tigger7 DNA MER2_type -9 2482 2254 243 247 27 0 chr1 1782839 1782912 -240881441 - Tigger7 DNA MER2_type -295 2292 2218 3142 210 54 1 chr1 1782919 1783642 -240880711 - Tigger7 DNA MER2_type -1724 763 3 735 247 68 11 chr1 1783676 1783939 -240880414 - L1MB3 LINE L1 -402 5778 5501 320 149 32 75 chr1 1784818 1784912 -240879441 - L1M3 LINE L1 -619 5549 5460 308 333 0 18 chr1 1785335 1785506 -240878847 + G-rich Low_complexity Low_complexity 2 169 0 490 286 0 0 chr1 1786103 1786215 -240878138 + MER81 DNA DNA 3 114 0 413 307 132 21 chr1 1786569 1786758 -240877595 - MIR SINE MIR -7 255 46 2301 109 0 0 chr1 1786927 1787238 -240877115 - AluSx SINE Alu -1 311 1 1122 223 106 64 chr1 1787949 1788364 -240875989 + MLT1D LTR MaLR 5 445 -60 1997 92 44 4 chr1 1788364 1788673 -240875680 - AluY SINE Alu 0 320 1 1122 223 106 64 chr1 1788673 1788737 -240875616 + MLT1D LTR MaLR 445 505 0 307 303 0 13 chr1 1788838 1788914 -240875439 + L1ME LINE L1 1261 1335 -5195 232 252 69 88 chr1 1788915 1789074 -240875279 + L1ME LINE L1 1766 1921 -4619 * 1522 231 42 5 chr1 1789058 1789490 -240874863 + L1MB7 LINE L1 5565 6012 -172 1044 79 14 0 chr1 1789490 1789629 -240874724 - AluSp/q SINE Alu -17 296 156 567 179 62 0 chr1 1789636 1789781 -240874572 + L1MB7 LINE L1 6031 6184 0 441 251 44 98 chr1 1789781 1789984 -240874369 + L1ME LINE L1 1954 2145 -4576 2298 66 0 3 chr1 1790102 1790389 -240873964 + AluY SINE Alu 1 286 -25 574 275 39 14 chr1 1790405 1790612 -240873741 + LTR40b LTR ERVL 154 365 -97 592 246 94 70 chr1 1790628 1791274 -240873079 + L1ME LINE L1 2284 2910 -3630 524 279 56 45 chr1 1791297 1791530 -240872823 + L1ME LINE L1 2802 3042 -3498 1380 269 22 11 chr1 1791530 1791891 -240872462 - MLT1A1 LTR MaLR 0 365 1 524 279 56 45 chr1 1791891 1792012 -240872341 + L1ME LINE L1 3042 3160 -3380 330 253 0 0 chr1 1792012 1792091 -240872262 - MER96 DNA MER1_type? 0 175 97 918 292 45 14 chr1 1792135 1792553 -240871800 + L1ME LINE L1 4301 4731 -1809 393 118 0 128 chr1 1792556 1792658 -240871695 - LTR52 LTR ERVL 0 421 333 528 167 0 0 chr1 1792659 1792803 -240871550 + (CA)n Simple_repeat Simple_repeat 1 144 0 863 260 17 51 chr1 1792805 1793155 -240871198 - LTR52 LTR ERVL -80 341 4 1612 147 44 34 chr1 1793216 1793751 -240870602 + MER51A LTR ERV1 1 622 -12 902 301 135 26 chr1 1793772 1794056 -240870297 + L1ME LINE L1 4768 5020 -1520 2232 125 0 0 chr1 1794056 1794367 -240869986 + AluSx SINE Alu 1 311 -1 902 301 135 26 chr1 1794367 1794732 -240869621 + L1ME LINE L1 5020 5488 -1052 1276 305 52 45 chr1 1794746 1794973 -240869380 + L1ME LINE L1 5573 5797 -767 2228 100 3 10 chr1 1794973 1795282 -240869071 + AluSg SINE Alu 1 307 -3 1276 305 52 45 chr1 1795282 1795860 -240868493 + L1ME LINE L1 5797 6389 -175 3391 141 11 19 chr1 1795978 1796509 -240867844 + MER1A DNA MER1_type 1 527 0 180 0 0 0 chr1 1797347 1797367 -240866986 + (A)n Simple_repeat Simple_repeat 1 20 0 295 242 40 0 chr1 1798929 1799028 -240865325 + MER82 DNA MER2_type 338 440 -213 251 296 37 0 chr1 1799067 1799148 -240865205 + MER82 DNA MER2_type 570 653 0 234 48 0 95 chr1 1799148 1799190 -240865163 + L1MB7 LINE L1 6099 6136 -48 1006 226 169 10 chr1 1801166 1801480 -240862873 - MLT1A1 LTR MaLR -1 364 1 343 229 74 16 chr1 1801551 1801673 -240862680 - MER117 DNA MER1_type -34 163 35 193 344 16 0 chr1 1801821 1801885 -240862468 + L2 LINE L2 3195 3259 -13 23 0 0 0 chr1 1802750 1802773 -240861580 + GC_rich Low_complexity Low_complexity 1 23 0 430 248 26 0 chr1 1803037 1803150 -240861203 - MER3 DNA MER1_type -25 184 69 3791 98 4 6 chr1 1805187 1805699 -240858654 + MER9 LTR ERVK 1 511 0 347 214 30 15 chr1 1805777 1805908 -240858445 + CT-rich Low_complexity Low_complexity 2 134 0 673 277 33 5 chr1 1806130 1806314 -240858039 - MER53 DNA DNA 0 189 1 843 222 111 0 chr1 1807619 1807880 -240856473 + MLT1B LTR MaLR 94 383 -7 453 19 0 0 chr1 1808685 1808739 -240855614 + (CA)n Simple_repeat Simple_repeat 2 55 0 1614 190 169 5 chr1 1808864 1809232 -240855121 + MSTA LTR MaLR 1 428 0 265 214 18 0 chr1 1809467 1809523 -240854830 + MLT1D LTR MaLR 1 57 -448 645 252 66 34 chr1 1809531 1809912 -240854441 - MLT2B1 LTR ERVL -1 413 2 1333 198 88 35 chr1 1809915 1810315 -240854038 + MLT1D LTR MaLR 77 497 -8 320 295 29 22 chr1 1810316 1810455 -240853898 - L1ME LINE L1 -293 5828 5689 416 300 6 6 chr1 1813782 1814327 -240850026 + (TG)n Simple_repeat Simple_repeat 1 545 0 285 315 0 0 chr1 1814367 1814440 -240849913 + MIR SINE MIR 76 148 -114 507 164 214 0 chr1 1814440 1814580 -240849773 - MER69A DNA AcHobo -3 174 5 349 372 0 16 chr1 1814821 1815004 -240849349 + (CA)n Simple_repeat Simple_repeat 1 180 0 3277 127 45 0 chr1 1816165 1816654 -240847699 - MER75 DNA T2_type -3 511 1 340 287 110 27 chr1 1816704 1817137 -240847216 + MLT1H LTR MaLR 31 540 -2 1542 178 4 11 chr1 1817137 1817406 -240846947 - AluJb SINE Alu -45 267 1 1873 145 7 10 chr1 1818160 1818456 -240845897 + AluJb SINE Alu 1 295 -17 4385 131 101 47 chr1 1819138 1819918 -240844435 - LTR12 LTR ERV1 0 826 5 2272 171 48 34 chr1 1819945 1820528 -240843825 - pTR5 LTR ERV1 -1111 1327 737 1325 240 110 2 chr1 1820732 1821141 -240843212 - MLT1D LTR MaLR -52 453 1 783 124 91 0 chr1 1821390 1821511 -240842842 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr1 1821511 1821548 -240842805 + AT_rich Low_complexity Low_complexity 1 37 0 226 259 73 134 chr1 1822321 1822568 -240841785 - L2 LINE L2 -11 3261 3030 202 306 92 0 chr1 1825525 1825623 -240838730 - L2 LINE L2 -30 3242 3136 209 185 37 0 chr1 1825740 1825794 -240838559 - L2 LINE L2 -372 2942 2887 * 227 322 63 28 chr1 1825786 1825929 -240838424 + MIR SINE MIR 37 184 -78 867 220 258 0 chr1 1826083 1826420 -240837933 + MER31B LTR ERV1 43 466 0 206 241 0 19 chr1 1827232 1827286 -240837067 + CT-rich Low_complexity Low_complexity 1 53 0 337 306 133 31 chr1 1833836 1834062 -240830291 - L2 LINE L2 -344 2970 2702 2244 106 0 0 chr1 1834062 1834355 -240829998 - AluSq SINE Alu -19 294 2 337 306 133 31 chr1 1834355 1834445 -240829908 - L2 LINE L2 -612 2702 2622 299 317 0 0 chr1 1834445 1834625 -240829728 + GA-rich Low_complexity Low_complexity 1 180 0 * 336 300 0 0 chr1 1834514 1834694 -240829659 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 362 289 0 0 chr1 1834713 1834886 -240829467 + (GCTG)n Simple_repeat Simple_repeat 1 173 0 338 321 0 0 chr1 1834809 1835155 -240829198 + (TGGG)n Simple_repeat Simple_repeat 1 346 0 * 295 328 0 0 chr1 1835137 1835311 -240829042 + (GCTG)n Simple_repeat Simple_repeat 4 177 0 * 201 353 82 0 chr1 1835795 1835880 -240828473 + MIR SINE MIR 155 246 -16 803 265 95 33 chr1 1837185 1837521 -240826832 - MLT1A1 LTR MaLR -8 357 1 657 261 96 58 chr1 1837750 1838169 -240826184 + MLT1H LTR MaLR 14 490 -59 1349 136 10 5 chr1 1838171 1838377 -240825976 - AluJb SINE Alu -19 293 87 313 185 0 0 chr1 1838377 1838442 -240825911 + MLT1H LTR MaLR 485 549 0 687 312 44 16 chr1 1838539 1838969 -240825384 + L1ME LINE L1 3851 4292 -1854 1328 208 14 41 chr1 1839133 1839427 -240824926 + AluJb SINE Alu 10 295 -17 211 260 0 19 chr1 1839461 1839565 -240824788 + GA-rich Low_complexity Low_complexity 3 104 0 237 306 0 10 chr1 1839593 1839691 -240824662 + L1ME LINE L1 4741 4837 -1309 465 252 67 20 chr1 1839827 1840255 -240824098 + L1ME LINE L1 5026 5481 -689 237 155 14 84 chr1 1840257 1840328 -240824025 + L1P5 LINE L1 5397 5462 -692 981 285 138 42 chr1 1840406 1841162 -240823191 + L1ME LINE L1 51 918 -5152 1506 172 69 0 chr1 1841162 1841424 -240822929 + AluJb SINE Alu 31 310 -2 981 285 138 42 chr1 1841424 1841615 -240822738 + L1ME LINE L1 918 1089 -4981 330 281 94 25 chr1 1842358 1842518 -240821835 - MIR SINE MIR -28 234 64 1822 113 58 0 chr1 1844312 1844614 -240819739 - AluSx SINE Alu 0 318 1 540 92 92 0 chr1 1844980 1845143 -240819210 + (CA)n Simple_repeat Simple_repeat 1 178 0 185 370 151 0 chr1 1848273 1848392 -240815961 + MIR SINE MIR 118 254 -8 247 292 0 0 chr1 1848404 1848493 -240815860 + (CAGCC)n Simple_repeat Simple_repeat 1 89 0 1894 216 50 34 chr1 1848565 1849397 -240814956 + LTR13 LTR ERVK 1 901 -106 348 250 0 0 chr1 1850614 1850686 -240813667 + MIR SINE MIR 78 149 -59 7002 182 43 118 chr1 1850689 1852140 -240812213 + L1MB3 LINE L1 2878 4436 -1710 712 189 57 46 chr1 1852140 1852315 -240812038 + MER8 DNA MER2_type 1 177 -62 7002 182 43 118 chr1 1852315 1852348 -240812005 + L1MB3 LINE L1 4436 4470 -1676 341 186 43 0 chr1 1852348 1852418 -240811935 - Tigger2 DNA MER2_type -2645 73 1 7002 182 43 118 chr1 1852418 1853328 -240811025 + L1MB3 LINE L1 4470 5319 -827 1367 94 5 5 chr1 1853328 1853520 -240810833 - AluSg/x SINE Alu -24 288 97 4203 171 9 28 chr1 1853527 1853825 -240810528 + L1MB3 LINE L1 5317 5619 -564 2265 95 0 3 chr1 1853825 1854131 -240810222 + AluSg SINE Alu 1 305 -5 4203 171 9 28 chr1 1854131 1854716 -240809637 + L1MB3 LINE L1 5619 6183 0 353 193 0 0 chr1 2055975 2056032 -240608321 - AluJ/FLAM SINE Alu -245 57 1 1030 230 111 51 chr1 2056749 2057180 -240607173 - MLT1C LTR MaLR 0 467 11 837 176 20 0 chr1 2058043 2058191 -240606162 + FRAM SINE Alu 4 154 -22 1315 152 94 18 chr1 2059658 2059935 -240604418 - MER7A DNA MER2_type 0 346 51 1540 152 141 0 chr1 2060323 2060586 -240603767 + AluJb SINE Alu 1 300 -12 2610 56 0 0 chr1 2061305 2061607 -240602746 - AluY SINE Alu -9 302 1 1541 130 0 0 chr1 2061805 2062033 -240602320 + AluSg/x SINE Alu 81 310 0 858 236 86 17 chr1 2062524 2062825 -240601528 + MER33 DNA MER1_type 1 322 -2 210 236 0 0 chr1 2062933 2062988 -240601365 + CT-rich Low_complexity Low_complexity 1 55 0 25 51 0 0 chr1 2063295 2063334 -240601019 + AT_rich Low_complexity Low_complexity 1 39 0 2171 96 30 23 chr1 2063619 2063920 -240600433 - AluSp SINE Alu -8 305 3 33 43 0 0 chr1 2063968 2064015 -240600338 + AT_rich Low_complexity Low_complexity 1 47 0 1447 133 13 4 chr1 2064094 2064319 -240600034 + AluJb SINE Alu 73 299 -13 1722 127 0 4 chr1 2065013 2065249 -240599104 - AluSq SINE Alu 0 313 79 784 132 0 150 chr1 2065250 2065417 -240598936 - AluSc SINE Alu -35 274 133 2417 79 0 3 chr1 2065682 2065973 -240598380 + AluSg SINE Alu 2 291 -19 1845 145 91 0 chr1 2066090 2066366 -240597987 + AluJo SINE Alu 1 301 -11 2080 144 0 0 chr1 2066656 2066955 -240597398 + AluSx SINE Alu 1 299 -13 2495 37 27 7 chr1 2067364 2067662 -240596691 + AluY SINE Alu 1 304 -7 2070 131 17 7 chr1 2068904 2069202 -240595151 + AluSx SINE Alu 1 301 -11 2270 121 0 3 chr1 2069206 2069513 -240594840 + AluSx SINE Alu 1 306 -6 266 243 196 0 chr1 2069745 2069852 -240594501 + MIR SINE MIR 15 142 -120 2069 128 7 0 chr1 2071293 2071583 -240592770 + AluJo SINE Alu 1 292 -20 599 268 141 19 chr1 2071584 2071797 -240592556 + MIR SINE MIR 21 259 -3 225 0 0 0 chr1 2073248 2073273 -240591080 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 93 3 17 chr1 2073418 2073720 -240590633 - AluY SINE Alu -13 298 1 729 213 128 0 chr1 2073720 2073861 -240590492 - FRAM SINE Alu -5 161 3 2190 96 21 10 chr1 2074068 2074359 -240589994 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr1 2076055 2076079 -240588274 + AT_rich Low_complexity Low_complexity 1 24 0 2276 98 14 0 chr1 2076406 2076701 -240587652 + AluSc SINE Alu 1 299 -10 1921 156 14 0 chr1 2076705 2076994 -240587359 + AluJb SINE Alu 1 293 -19 234 250 16 16 chr1 2078577 2078641 -240585712 + L2 LINE L2 3207 3270 -2 2452 67 0 13 chr1 2078784 2079097 -240585256 - AluY SINE Alu -2 309 1 712 156 16 8 chr1 2079143 2079271 -240585082 - MER46A DNA MER2_type 0 236 108 354 316 33 0 chr1 2080919 2081071 -240583282 + L1MB1 LINE L1 6005 6161 -7 357 211 87 0 chr1 2081641 2081745 -240582608 - L2 LINE L2 -18 3295 3183 572 190 83 0 chr1 2081901 2082022 -240582331 - L1MB3 LINE L1 -1 6182 6052 1785 179 13 16 chr1 2082069 2082376 -240581977 + AluJb SINE Alu 1 306 -6 1562 121 8 32 chr1 2082471 2082720 -240581633 - AluJb SINE Alu -64 248 6 21 82 0 0 chr1 2083096 2083145 -240581208 + AT_rich Low_complexity Low_complexity 1 49 0 236 274 0 16 chr1 2084077 2084139 -240580214 - L1ME3A LINE L1 -199 5971 5911 285 329 121 9 chr1 2084159 2084390 -240579963 - L1ME3A LINE L1 -358 5812 5556 253 342 40 13 chr1 2084931 2085156 -240579197 - L1ME3A LINE L1 -832 5314 5084 451 111 0 141 chr1 2085166 2085205 -240579148 - MSTA LTR MaLR 0 428 410 2315 77 7 0 chr1 2085205 2085492 -240578861 + AluSp SINE Alu 1 289 -24 451 111 0 141 chr1 2085492 2085551 -240578802 - MSTA LTR MaLR -18 410 344 234 116 0 0 chr1 2087329 2087372 -240576981 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 265 296 48 0 chr1 2087444 2087569 -240576784 - L1MC5 LINE L1 -106 7855 7725 1175 276 95 49 chr1 2087709 2088564 -240575789 - L1MC5 LINE L1 -446 7515 6615 346 280 62 52 chr1 2089574 2089767 -240574586 - MLT1E1 LTR MaLR -163 491 297 247 258 82 44 chr1 2089956 2090115 -240574238 - L1ME LINE L1 -5124 946 782 844 226 118 19 chr1 2090115 2090438 -240573915 - L1MB7 LINE L1 -9 6175 5821 251 190 35 0 chr1 2090449 2090507 -240573846 - L1ME LINE L1 -5297 773 714 260 356 56 23 chr1 2090532 2090748 -240573605 + L1M4 LINE L1 4943 5165 -981 398 136 99 12 chr1 2090754 2090835 -240573518 + L1MB2 LINE L1 6028 6115 -56 288 216 58 90 chr1 2090931 2091150 -240573203 - L2 LINE L2 -535 2779 2499 252 264 169 41 chr1 2091557 2091871 -240572482 - MLT1H LTR MaLR -111 438 85 2089 102 3 39 chr1 2092236 2092541 -240571812 - AluSx SINE Alu -18 294 1 1902 127 57 0 chr1 2093506 2093789 -240570564 + AluSx SINE Alu 1 299 -13 1184 125 6 0 chr1 2095622 2095790 -240568563 - AluSg/x SINE Alu -24 288 120 333 216 0 0 chr1 2095890 2095978 -240568375 + G-rich Low_complexity Low_complexity 1 88 0 209 159 45 0 chr1 2096004 2096048 -240568305 + G-rich Low_complexity Low_complexity 6 51 0 264 284 0 0 chr1 2096062 2096157 -240568196 + G-rich Low_complexity Low_complexity 1 95 0 823 105 0 9 chr1 2096244 2096358 -240567995 + AluSg/x SINE Alu 182 294 -16 183 156 0 0 chr1 2096574 2096606 -240567747 + (TA)n Simple_repeat Simple_repeat 2 33 0 2395 74 0 49 chr1 2096731 2097055 -240567298 - AluSg SINE Alu -2 308 1 21 36 0 0 chr1 2097253 2097281 -240567072 + AT_rich Low_complexity Low_complexity 1 28 0 232 36 0 0 chr1 2098365 2098393 -240565960 + MIR SINE MIR 116 143 -119 2477 84 0 0 chr1 2098870 2099167 -240565186 - AluSx SINE Alu -15 297 1 1273 161 0 28 chr1 2099173 2099391 -240564962 - AluJo SINE Alu -13 299 88 3075 100 16 9 chr1 2099482 2099931 -240564422 - LTR3b LTR ERVK -48 452 1 348 210 180 0 chr1 2099987 2100087 -240564266 + MSTC LTR MaLR 11 128 -268 1830 159 10 0 chr1 2100110 2100400 -240563953 + AluJb SINE Alu 1 293 -19 2502 65 3 0 chr1 2100403 2100695 -240563658 + AluSp SINE Alu 1 293 -20 466 189 90 7 chr1 2100723 2100881 -240563472 + MSTC LTR MaLR 226 428 0 1829 167 7 3 chr1 2100891 2101185 -240563168 - AluJb SINE Alu -13 299 5 2129 133 3 0 chr1 2101216 2101509 -240562844 + AluSx SINE Alu 1 294 -18 278 153 125 0 chr1 2101589 2101661 -240562692 - L1MEc LINE L1 -6048 348 268 1625 126 168 3 chr1 2101688 2102022 -240562331 + MSTA LTR MaLR 1 389 -39 2332 64 0 37 chr1 2102022 2102355 -240561998 + AluY SINE Alu 1 322 0 1954 153 142 14 chr1 2102370 2102861 -240561492 - LOR1-int LTR ERV1 -3269 3936 1515 8221 60 14 5 chr1 2102861 2103859 -240560494 + LTR13 LTR ERVK 1 1007 0 1175 146 19 5 chr1 2103859 2104065 -240560288 + HERVK13 LTR ERVK 1 209 -7907 705 228 213 68 chr1 2104056 2104573 -240559780 + HERVK13 LTR ERVK 727 1318 -6798 * 421 283 12 58 chr1 2104560 2104733 -240559620 + HERVK13 LTR ERVK 3965 4129 -3987 * 3085 244 3 3 chr1 2104724 2106133 -240558220 + HERVK13 LTR ERVK 4572 6092 -2024 * 6199 217 3 24 chr1 2106122 2106356 -240557997 + HERVK13 LTR ERVK 6733 6970 -1146 2404 74 3 0 chr1 2106356 2106665 -240557688 + AluY SINE Alu 1 310 -1 6199 217 3 24 chr1 2106665 2107843 -240556510 + HERVK13 LTR ERVK 6970 8116 0 3702 40 4 0 chr1 2107843 2108320 -240556033 + LTR13 LTR ERVK 1 479 -528 1009 248 4 18 chr1 2108323 2108597 -240555756 - HERVK13 LTR ERVK -2972 5144 4875 1995 119 9 3 chr1 2108599 2108926 -240555427 + THE1A LTR MaLR 27 355 0 1873 129 5 18 chr1 2108926 2109357 -240554996 - LTR38-int LTR ERV1 -1097 689 364 * 2281 173 70 0 chr1 2109343 2109787 -240554566 - LTR38-int LTR ERV1 -1310 476 2 1727 152 29 79 chr1 2109788 2110208 -240554145 - LTR38 LTR ERV1 0 556 158 2176 105 20 0 chr1 2110210 2110516 -240553837 - AluSx SINE Alu 0 312 1 1994 140 11 91 chr1 2110562 2110796 -240553557 - MER4D LTR ERV1 -468 435 184 2219 115 0 0 chr1 2110796 2111101 -240553252 - AluSx SINE Alu -7 305 1 1994 140 11 91 chr1 2111101 2111312 -240553041 - MER4D LTR ERV1 -719 184 26 2382 71 0 6 chr1 2111312 2111623 -240552730 - AluY SINE Alu -2 309 1 1994 140 11 91 chr1 2111623 2111640 -240552713 - MER4D LTR ERV1 -877 26 9 1742 171 4 0 chr1 2111641 2111947 -240552406 + AluJb SINE Alu 1 307 0 1827 126 16 55 chr1 2111956 2112266 -240552087 + AluSx SINE Alu 1 298 -14 2157 99 3 48 chr1 2112373 2112748 -240551605 + MER4A LTR ERV1 1 358 -306 1655 168 7 7 chr1 2112789 2113099 -240551254 + MER4A LTR ERV1 355 664 0 183 302 95 0 chr1 2114361 2114424 -240549929 - MIR SINE MIR -62 200 132 240 297 33 33 chr1 2114490 2114581 -240549772 + L2 LINE L2 3181 3271 -1 2312 85 3 0 chr1 2114713 2115018 -240549335 - AluSx SINE Alu -6 306 1 1736 107 85 0 chr1 2115151 2115422 -240548931 + AluJb SINE Alu 1 294 -18 3875 146 35 50 chr1 2115451 2115570 -240548783 - LTR8A LTR ERV1 0 727 608 2236 101 3 0 chr1 2115570 2115876 -240548477 - AluY SINE Alu -4 307 1 3875 146 35 50 chr1 2115876 2116398 -240547955 - LTR8A LTR ERV1 -119 608 96 1897 112 69 0 chr1 2116398 2116674 -240547679 + AluSp SINE Alu 1 295 -18 3875 146 35 50 chr1 2116674 2116769 -240547584 - LTR8A LTR ERV1 -631 96 1 2215 78 0 4 chr1 2117045 2117326 -240547027 + AluSc SINE Alu 14 293 -16 2053 132 0 0 chr1 2117737 2118026 -240546327 + AluJb SINE Alu 1 289 -23 2298 96 3 0 chr1 2118035 2118338 -240546015 + AluSp SINE Alu 1 304 -9 244 274 12 12 chr1 2122687 2122771 -240541582 + GA-rich Low_complexity Low_complexity 1 84 0 232 229 71 14 chr1 2123062 2123132 -240541221 + MIR SINE MIR 110 183 -79 1834 154 10 7 chr1 2123280 2123573 -240540780 - AluSx SINE Alu -18 294 1 2159 117 0 0 chr1 2123624 2123922 -240540431 + AluSx SINE Alu 6 303 -9 2184 96 14 0 chr1 2124782 2125075 -240539278 - AluSp SINE Alu -16 297 1 2241 113 0 0 chr1 2126351 2126652 -240537701 - AluSq SINE Alu -12 301 1 1776 174 19 6 chr1 2126658 2126974 -240537379 - 7SLRNA srpRNA srpRNA 0 320 1 1563 101 5 5 chr1 2127195 2127412 -240536941 + AluSp SINE Alu 2 218 -95 1136 139 0 6 chr1 2127412 2127584 -240536769 + AluSp SINE Alu 143 313 0 1924 141 3 3 chr1 2127807 2128091 -240536262 - AluJo SINE Alu -28 284 1 220 204 19 37 chr1 2128553 2128607 -240535746 - L3 LINE CR1 -319 1258 1206 2040 110 17 0 chr1 2128966 2129258 -240535095 - AluSc SINE Alu -7 302 6 300 85 64 0 chr1 2129258 2129305 -240535048 - Alu SINE Alu -250 50 1 274 306 12 0 chr1 2129530 2129615 -240534738 + MER7A DNA MER2_type 1 84 -262 189 107 0 0 chr1 2131153 2131181 -240533172 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 252 328 46 27 chr1 2134755 2134881 -240529472 - MIR SINE MIR -46 162 33 203 253 0 40 chr1 2137203 2137278 -240527075 + G-rich Low_complexity Low_complexity 6 77 0 191 122 0 24 chr1 2137380 2137421 -240526932 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 640 236 10 45 chr1 2138697 2138896 -240525457 + MER63A DNA MER1_type 1 192 -18 236 254 16 16 chr1 2139109 2139172 -240525181 + CT-rich Low_complexity Low_complexity 3 65 0 183 339 57 73 chr1 2140290 2140414 -240523939 - MIR SINE MIR -113 149 28 241 231 62 15 chr1 2141047 2141112 -240523241 - L2 LINE L2 -1 3312 3245 1816 162 7 13 chr1 2141569 2141877 -240522476 + AluJb SINE Alu 1 306 -6 277 341 41 32 chr1 2142044 2142167 -240522186 + MIR SINE MIR 124 247 -15 2294 103 0 0 chr1 2142827 2143128 -240521225 + AluSc SINE Alu 1 301 -8 719 288 126 3 chr1 2143461 2143787 -240520566 + HAL1 LINE L1 1 366 -2141 1717 195 13 3 chr1 2143800 2144108 -240520245 + AluJb SINE Alu 1 311 -1 1333 249 167 34 chr1 2144205 2144913 -240519440 + HAL1 LINE L1 856 1683 -824 2175 117 3 0 chr1 2144913 2145212 -240519141 - AluSq SINE Alu -13 300 1 1333 249 167 34 chr1 2145212 2145301 -240519052 + HAL1 LINE L1 1683 1759 -748 657 248 109 29 chr1 2145384 2145731 -240518622 + HAL1 LINE L1 2133 2507 0 300 286 0 0 chr1 2146630 2146714 -240517639 + CT-rich Low_complexity Low_complexity 2 85 0 212 149 21 0 chr1 2147950 2147997 -240516356 + C-rich Low_complexity Low_complexity 3 50 0 235 289 67 22 chr1 2148162 2148297 -240516056 - MIR3 SINE MIR -61 147 7 489 269 0 8 chr1 2149134 2149280 -240515073 + L1MDa LINE L1 1904 2073 -4493 838 269 46 9 chr1 2149281 2149605 -240514748 + L1MDa LINE L1 3222 3557 -2983 349 139 119 40 chr1 2149642 2149743 -240514610 + L1MC4 LINE L1 7918 8026 -16 474 306 77 32 chr1 2149828 2150076 -240514277 + MLT1K LTR MaLR 264 522 -66 228 245 0 0 chr1 2150144 2150193 -240514160 - L1ME LINE L1 -477 5644 5596 398 323 29 32 chr1 2150390 2150734 -240513619 + L1MDa LINE L1 3543 3885 -2655 2041 116 0 27 chr1 2150736 2151037 -240513316 - AluSg SINE Alu -17 293 1 1735 164 6 25 chr1 2151069 2151387 -240512966 + AluJb SINE Alu 1 312 0 531 155 0 31 chr1 2151402 2151480 -240512873 + AluJ/FRAM SINE Alu 216 292 -20 2150 102 7 0 chr1 2151480 2151774 -240512579 + AluSc SINE Alu 1 296 -13 531 155 0 31 chr1 2151774 2151792 -240512561 + AluJ/FRAM SINE Alu 292 309 -3 303 274 19 0 chr1 2151803 2151909 -240512444 + L1MDa LINE L1 3906 4013 -2527 1831 127 3 47 chr1 2151912 2152023 -240512330 + AluJb SINE Alu 2 116 -196 2336 73 3 3 chr1 2152023 2152325 -240512028 - AluY SINE Alu -9 302 1 1831 127 3 47 chr1 2152325 2152513 -240511840 + AluJb SINE Alu 116 288 -24 211 220 0 0 chr1 2152526 2152576 -240511777 + A-rich Low_complexity Low_complexity 1 50 0 257 289 0 10 chr1 2152600 2152704 -240511649 + L1MDa LINE L1 4025 4127 -2413 181 280 113 48 chr1 2153484 2153601 -240510752 + MIR3 SINE MIR 1 134 -74 2175 101 3 10 chr1 2153601 2153907 -240510446 - AluSg1 SINE Alu -5 304 1 181 280 113 48 chr1 2153907 2153957 -240510396 + MIR3 SINE MIR 134 179 -29 184 343 45 0 chr1 2155287 2155354 -240508999 + MIR3 SINE MIR 112 181 -27 2241 83 9 46 chr1 2156330 2156655 -240507698 + AluSp SINE Alu 1 313 0 256 194 54 75 chr1 2157587 2157680 -240506673 - LTR45B LTR ERV1 -1 488 398 1267 177 165 11 chr1 2157689 2157983 -240506370 + AluSg SINE Alu 1 334 0 2389 58 0 0 chr1 2158065 2158356 -240505997 + AluY SINE Alu 1 291 -20 3882 190 31 52 chr1 2158575 2159565 -240504788 - LTR5 LTR ERVK 0 969 1 1475 199 39 77 chr1 2159689 2159783 -240504570 + MER7A DNA MER2_type 1 97 -2941 2384 79 3 0 chr1 2159783 2160086 -240504267 + AluY SINE Alu 1 304 -7 1475 199 39 77 chr1 2160086 2160353 -240504000 + MER7A DNA MER2_type 97 346 0 3872 181 79 51 chr1 2160819 2161747 -240502606 + LTR13 LTR ERVK 1 954 0 1139 106 0 0 chr1 2162049 2162209 -240502144 + AluSg/x SINE Alu 153 312 0 22 0 0 0 chr1 2162620 2162642 -240501711 + GC_rich Low_complexity Low_complexity 1 22 0 614 347 157 2 chr1 2164366 2164781 -240499572 - L2 LINE L2 -1 3312 2834 221 259 193 7 chr1 2164843 2164978 -240499375 - L2 LINE L2 -637 2677 2518 221 0 0 33 chr1 2165436 2165466 -240498887 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2096 73 18 0 chr1 2165508 2165782 -240498571 - AluY SINE Alu -32 279 1 1942 122 7 26 chr1 2166032 2166336 -240498017 - AluJb SINE Alu -14 298 1 278 309 112 45 chr1 2167386 2167609 -240496744 - L2 LINE L2 -2 3270 3033 3072 114 109 80 chr1 2168267 2168883 -240495470 - MER51A LTR ERV1 0 634 1 1868 107 52 10 chr1 2169231 2169521 -240494832 + AluSx SINE Alu 1 302 -10 2320 91 0 0 chr1 2172090 2172388 -240491965 - AluSg SINE Alu -12 298 1 283 324 56 21 chr1 2174745 2174887 -240489466 + MIR SINE MIR 3 149 -113 194 250 31 16 chr1 2177978 2178042 -240486311 + MIR SINE MIR 79 143 -119 262 299 86 0 chr1 2179467 2179584 -240484769 - MIR SINE MIR -72 190 64 182 325 51 26 chr1 2180270 2180387 -240483966 - L2 LINE L2 -144 3128 3009 1574 153 29 70 chr1 2180950 2181264 -240483089 - AluJo SINE Alu -2 310 10 830 147 10 28 chr1 2183027 2183570 -240480783 + (TCCA)n Simple_repeat Simple_repeat 1 532 0 789 137 6 27 chr1 2183590 2183773 -240480580 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 738 149 7 18 chr1 2183788 2184067 -240480286 + (TCCA)n Simple_repeat Simple_repeat 1 275 0 620 164 11 27 chr1 2184078 2184261 -240480092 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 753 185 4 15 chr1 2184287 2184558 -240479795 + (TCCA)n Simple_repeat Simple_repeat 1 268 0 253 109 36 18 chr1 2184559 2184614 -240479739 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 2230 101 0 0 chr1 2184931 2185229 -240479124 - AluSx SINE Alu -14 298 1 400 306 38 48 chr1 2186782 2187305 -240477048 - TAR1 Satellite telomeric -570 1541 1024 206 385 19 0 chr1 2189012 2189116 -240475237 - MIR3 SINE MIR -7 201 96 1962 105 30 23 chr1 2189750 2190029 -240474324 + AluSx SINE Alu 1 284 -28 414 0 0 0 chr1 2190029 2190075 -240474278 + (CA)n Simple_repeat Simple_repeat 1 46 0 1962 105 30 23 chr1 2190075 2190099 -240474254 + AluSx SINE Alu 284 306 -6 189 0 0 0 chr1 2191734 2191755 -240472598 + (CCCCG)n Simple_repeat Simple_repeat 5 25 0 345 275 101 0 chr1 2197097 2197235 -240467118 + MIR SINE MIR 20 171 -91 306 106 0 0 chr1 2198097 2198144 -240466209 + (CA)n Simple_repeat Simple_repeat 1 47 0 186 349 177 16 chr1 2198731 2198923 -240465430 - MIR SINE MIR -6 256 34 325 333 8 8 chr1 2199114 2199240 -240465113 + (TG)n Simple_repeat Simple_repeat 1 126 0 401 343 129 5 chr1 2201336 2201537 -240462816 + MIR SINE MIR 2 227 -35 336 308 19 9 chr1 2203613 2203720 -240460633 - MIR SINE MIR -65 197 90 23 0 0 0 chr1 2203836 2203859 -240460494 + GC_rich Low_complexity Low_complexity 1 23 0 283 286 39 77 chr1 2204635 2204777 -240459576 + L1M4 LINE L1 5735 5871 -307 811 181 7 7 chr1 2204783 2204932 -240459421 + FRAM SINE Alu 19 167 -9 201 139 28 0 chr1 2205498 2205534 -240458819 + L2 LINE L2 3137 3173 -99 545 298 99 8 chr1 2205539 2205801 -240458552 + MER33 DNA MER1_type 13 298 -26 418 257 76 76 chr1 2208029 2208157 -240456196 + MIR SINE MIR 23 153 -109 2125 111 0 13 chr1 2208157 2208463 -240455890 + AluSx SINE Alu 1 302 -10 418 257 76 76 chr1 2208463 2208505 -240455848 + MIR SINE MIR 152 193 -69 2029 64 64 4 chr1 2209172 2209439 -240454914 - AluSx SINE Alu -17 295 13 236 234 32 53 chr1 2210157 2210251 -240454102 + C-rich Low_complexity Low_complexity 4 95 0 212 364 96 11 chr1 2212862 2213049 -240451304 - L2 LINE L2 -842 2472 2270 234 298 276 0 chr1 2213991 2214219 -240450134 + L2 LINE L2 2425 2715 -599 233 232 40 0 chr1 2214968 2215067 -240449286 - MSR1 Satellite Satellite -1 110 8 241 227 41 0 chr1 2215179 2215276 -240449077 - MSR1 Satellite Satellite -1 110 10 246 206 41 0 chr1 2215354 2215591 -240448762 - MSR1 Satellite Satellite -1 246 1 349 184 21 100 chr1 2215652 2215842 -240448511 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 246 206 41 0 chr1 2215882 2216014 -240448339 - MSR1 Satellite Satellite -1 137 1 289 188 0 134 chr1 2216040 2216242 -240448111 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 200 264 127 0 chr1 2216389 2216483 -240447870 - MIR SINE MIR -56 152 46 227 310 30 50 chr1 2216851 2216951 -240447402 + L2 LINE L2 3216 3313 0 189 225 34 0 chr1 2217832 2217921 -240446432 + (CA)n Simple_repeat Simple_repeat 1 92 0 219 317 10 10 chr1 2217948 2218049 -240446304 + (CA)n Simple_repeat Simple_repeat 1 101 0 276 120 0 0 chr1 2222252 2222302 -240442051 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 333 358 40 0 chr1 2223054 2223205 -240441148 - MIR SINE MIR -78 184 28 534 256 235 21 chr1 2226043 2226422 -240437931 + MLT1K LTR MaLR 19 478 -110 337 190 13 25 chr1 2226562 2226641 -240437712 + MLT1K LTR MaLR 452 529 -59 281 323 50 0 chr1 2228930 2229029 -240435324 - MIR SINE MIR -88 174 71 260 302 62 10 chr1 2229498 2229594 -240434759 - MIR3 SINE MIR -41 167 67 597 294 11 0 chr1 2229606 2229783 -240434570 + L1MB5 LINE L1 5698 5876 -298 372 337 97 42 chr1 2229862 2230550 -240433803 + L1M4c LINE L1 796 1493 -4891 253 318 121 15 chr1 2231084 2231216 -240433137 - MER5A DNA MER1_type 0 189 44 1666 178 0 35 chr1 2231961 2232275 -240432078 + AluJo SINE Alu 1 303 -9 408 232 126 0 chr1 2232951 2233102 -240431251 + MER20 DNA MER1_type 2 171 -48 254 260 82 48 chr1 2233202 2233348 -240431005 - MIR3 SINE MIR -55 153 3 333 340 0 38 chr1 2233504 2233689 -240430664 + C-rich Low_complexity Low_complexity 2 179 0 383 254 6 42 chr1 2233716 2233881 -240430472 + CT-rich Low_complexity Low_complexity 6 164 0 239 274 105 0 chr1 2235920 2236015 -240428338 - MIR SINE MIR -124 138 34 527 291 31 41 chr1 2236355 2236551 -240427802 + MIR SINE MIR 55 248 -14 216 307 160 40 chr1 2238204 2238354 -240425999 - MIR SINE MIR -34 228 61 208 250 111 28 chr1 2239062 2239134 -240425219 + L2 LINE L2 3232 3309 -4 2223 103 3 7 chr1 2239273 2239583 -240424770 - AluSx SINE Alu -3 309 1 198 319 43 11 chr1 2239759 2239853 -240424500 - MIR SINE MIR -103 159 63 313 374 9 9 chr1 2241257 2241364 -240422989 - L1MC5 LINE L1 -167 7794 7688 240 188 25 75 chr1 2241364 2241418 -240422935 + MER116 DNA Mariner 1 51 -29 288 0 0 0 chr1 2241418 2241450 -240422903 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 188 25 75 chr1 2241450 2241475 -240422878 + MER116 DNA Mariner 51 76 -4 2273 94 0 7 chr1 2242189 2242497 -240421856 - AluSc SINE Alu -3 306 1 1069 196 78 156 chr1 2242560 2243100 -240421253 - MLT1D LTR MaLR -7 498 1 191 227 23 0 chr1 2243558 2243602 -240420751 - MIR SINE MIR -24 238 194 873 201 10 45 chr1 2243605 2243804 -240420549 + AluJo SINE Alu 91 282 -30 2033 97 50 13 chr1 2243812 2244111 -240420242 - AluSq SINE Alu -1 312 3 1109 161 0 0 chr1 2244131 2244323 -240420030 + AluSg/x SINE Alu 121 312 0 259 175 225 0 chr1 2246111 2246191 -240418162 + MER39 LTR ERV1 291 388 -319 2096 76 69 3 chr1 2246243 2246532 -240417821 - AluY SINE Alu -3 308 1 412 324 23 6 chr1 2246558 2246734 -240417619 + MER39 LTR ERV1 500 678 -29 188 246 77 31 chr1 2246836 2246901 -240417452 + MIR SINE MIR 86 153 -109 392 182 149 41 chr1 2247239 2247360 -240416993 + MER34C LTR ERV1 4 137 -448 266 250 93 9 chr1 2247578 2247686 -240416667 + LTR48 LTR ERV1 616 732 -55 1082 116 12 6 chr1 2247893 2248057 -240416296 - FRAM SINE Alu -16 160 1 355 231 58 49 chr1 2248062 2248240 -240416113 + L1MCa LINE L1 1898 6983 -1339 1738 157 0 4 chr1 2248271 2248539 -240415814 - AluJb SINE Alu -45 267 1 1095 242 57 75 chr1 2248543 2249328 -240415025 + MER34C-int LTR ERV1 2617 3387 -1549 * 4310 198 44 47 chr1 2249323 2249986 -240414367 + MER34C-int LTR ERV1 3558 4219 -717 1688 123 53 49 chr1 2249986 2250291 -240414062 + AluSx SINE Alu 1 306 0 4310 198 44 47 chr1 2250291 2250806 -240413547 + MER34C-int LTR ERV1 4219 4734 -202 425 155 0 0 chr1 2250891 2250961 -240413392 + MER34C LTR ERV1 3 72 -513 465 96 0 0 chr1 2250961 2251034 -240413319 + MER34C LTR ERV1 1 73 -512 * 472 72 0 0 chr1 2251001 2251070 -240413283 + MER34C LTR ERV1 5 73 -512 457 87 0 0 chr1 2251037 2251106 -240413247 + MER34C LTR ERV1 5 73 -512 * 442 116 0 0 chr1 2251073 2251141 -240413212 + MER34C LTR ERV1 5 72 -513 825 195 30 37 chr1 2251141 2251377 -240412976 + MER34C LTR ERV1 1 234 -351 232 250 23 45 chr1 2251614 2251702 -240412651 + LTR48 LTR ERV1 702 787 0 378 213 56 9 chr1 2252287 2252395 -240411958 - Charlie4a DNA MER1_type -3 505 393 1156 235 24 42 chr1 2252447 2252856 -240411497 + MLT1C LTR MaLR 60 461 -6 991 274 54 3 chr1 2252870 2253184 -240411169 - Charlie4a DNA MER1_type -149 359 30 657 302 19 0 chr1 2253326 2253531 -240410822 + MIR SINE MIR 52 260 -2 2446 47 7 0 chr1 2253773 2254070 -240410283 - AluY SINE Alu -12 299 1 2093 127 0 0 chr1 2254561 2254861 -240409492 - AluSx SINE Alu -12 300 1 625 281 89 13 chr1 2255317 2255552 -240408801 - MIR SINE MIR -6 256 4 2044 125 3 13 chr1 2255766 2256077 -240408276 - AluSx SINE Alu -4 308 1 226 246 16 41 chr1 2257403 2257525 -240406828 + (CGGG)n Simple_repeat Simple_repeat 4 122 0 210 176 0 0 chr1 2259454 2259505 -240404848 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 575 176 61 14 chr1 2259528 2259676 -240404677 - MER53 DNA DNA -15 174 20 23 33 0 0 chr1 2260085 2260115 -240404238 + GC_rich Low_complexity Low_complexity 1 30 0 844 148 104 0 chr1 2263398 2263580 -240400773 - Tigger7 DNA MER2_type -3 2484 2284 * 1093 218 30 11 chr1 2263579 2263841 -240400512 - Tigger7 DNA MER2_type -233 500 234 288 297 48 0 chr1 2264423 2264588 -240399765 + (CCGCG)n Simple_repeat Simple_repeat 4 176 0 224 317 50 0 chr1 2264511 2264672 -240399681 + (CACGT)n Simple_repeat Simple_repeat 1 169 0 * 2291 80 7 0 chr1 2267209 2267509 -240396844 - AluSp SINE Alu -11 302 1 352 340 89 38 chr1 2267509 2267734 -240396619 - L1 LINE L1 -1225 4921 4667 663 216 0 0 chr1 2267734 2267859 -240396494 - FLAM_A SINE Alu -8 125 1 352 340 89 38 chr1 2267859 2267912 -240396441 - L1 LINE L1 -1479 4667 4618 444 320 20 0 chr1 2267976 2268176 -240396177 - L1 LINE L1 -3732 2414 2211 513 376 82 9 chr1 2268230 2268573 -240395780 - L1ME1 LINE L1 -16 6150 5783 287 333 0 18 chr1 2271330 2271441 -240392912 - L1MC5 LINE L1 -173 7788 7680 1857 164 27 0 chr1 2272108 2272406 -240391947 - AluJb SINE Alu -6 306 1 2135 116 0 0 chr1 2274135 2274427 -240389926 - AluJb SINE Alu -20 292 1 253 223 184 10 chr1 2275288 2275391 -240388962 - L2 LINE L2 -14 3258 3138 256 157 0 0 chr1 2275489 2275540 -240388813 - L2 LINE L2 -337 2976 2926 273 375 50 0 chr1 2275879 2275999 -240388354 + L2 LINE L2 2626 2751 -563 27 0 0 0 chr1 2276518 2276545 -240387808 + GC_rich Low_complexity Low_complexity 1 27 0 308 268 154 8 chr1 2276912 2277035 -240387318 + MIR SINE MIR 31 171 -91 21 0 0 0 chr1 2279158 2279179 -240385174 + AT_rich Low_complexity Low_complexity 1 21 0 2079 123 3 10 chr1 2279816 2280125 -240384228 + AluSc SINE Alu 3 309 0 2230 103 0 6 chr1 2280235 2280547 -240383806 + AluSx SINE Alu 1 310 -2 1990 146 11 76 chr1 2280547 2280758 -240383595 + MER4D LTR ERV1 19 187 -716 2201 118 0 0 chr1 2280758 2281063 -240383290 + AluSx SINE Alu 1 305 -7 1990 146 11 76 chr1 2281063 2281297 -240383056 + MER4D LTR ERV1 187 435 -468 1069 55 0 0 chr1 2281343 2281471 -240382882 + AluSq/x SINE Alu 1 128 -184 1948 142 0 0 chr1 2281693 2281996 -240382357 + AluSx SINE Alu 1 303 0 23 0 0 0 chr1 2283416 2283439 -240380914 + GC_rich Low_complexity Low_complexity 1 23 0 299 342 40 13 chr1 2285143 2285368 -240378985 - L1M4 LINE L1 -832 5314 5084 2058 123 10 0 chr1 2285417 2285717 -240378636 + AluSp SINE Alu 1 303 -10 1428 209 102 40 chr1 2489297 2489718 -240174635 + MLT1C LTR MaLR 21 467 0 254 198 26 129 chr1 2491335 2491451 -240172902 - L3 LINE CR1 -4 1573 1470 745 185 58 24 chr1 2492802 2493007 -240171346 + ORSL DNA AcHobo 44 255 -20 210 37 0 0 chr1 2493097 2493124 -240171229 + (CTG)n Simple_repeat Simple_repeat 3 29 0 198 300 14 0 chr1 2493496 2493566 -240170787 - MIR SINE MIR -171 91 21 215 308 205 8 chr1 2493587 2493704 -240170649 - MIR SINE MIR -81 181 42 242 279 99 36 chr1 2494415 2494526 -240169827 + MIR SINE MIR 18 135 -73 448 285 33 26 chr1 2494888 2495039 -240169314 - MIR SINE MIR -97 165 14 503 242 53 52 chr1 2495522 2495828 -240168525 + MLT1H LTR MaLR 82 382 -27 1965 122 91 28 chr1 2496624 2496976 -240167377 + THE1C LTR MaLR 1 374 -1 989 237 108 12 chr1 2496984 2497283 -240167070 - MLT1C LTR MaLR -150 355 6 299 371 74 25 chr1 2498273 2498556 -240165797 - L2 LINE L2 0 3272 2976 284 238 38 86 chr1 2498583 2498688 -240165665 + MIR SINE MIR 6 105 -157 525 262 0 21 chr1 2501830 2501971 -240162382 + L2 LINE L2 3162 3299 -14 517 194 29 0 chr1 2501992 2502167 -240162186 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 676 145 22 17 chr1 2502189 2502368 -240161985 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 234 136 0 0 chr1 2502375 2502419 -240161934 + (CATA)n Simple_repeat Simple_repeat 3 46 0 276 203 0 0 chr1 2502722 2502781 -240161572 + MER45 DNA AcHobo 1412 1470 -111 3453 213 44 7 chr1 2502829 2503584 -240160769 - MER45B DNA AcHobo -156 884 102 5179 106 3 4 chr1 2503584 2504361 -240159992 + L1PA13 LINE L1 5368 6143 -20 451 244 71 16 chr1 2504361 2504488 -240159865 - MER45B DNA AcHobo -903 137 4 279 104 0 0 chr1 2504680 2504728 -240159625 + (CA)n Simple_repeat Simple_repeat 1 48 0 356 276 26 9 chr1 2505249 2505365 -240158988 - MARNA DNA Mariner -158 428 311 389 299 52 61 chr1 2505418 2505649 -240158704 + MIR SINE MIR 31 259 -3 891 215 56 10 chr1 2505794 2505989 -240158364 + MER3 DNA MER1_type 1 204 -5 293 247 56 84 chr1 2505835 2506013 -240158340 - MER3 DNA MER1_type -5 204 32 * 377 287 73 15 chr1 2506061 2506197 -240158156 - MER103 DNA DNA -21 145 2 2126 101 7 3 chr1 2506310 2506618 -240157735 + AluY SINE Alu 1 309 -2 1313 232 150 30 chr1 2510675 2511115 -240153238 - MLT1D LTR MaLR 0 505 13 375 367 6 6 chr1 2511886 2512063 -240152290 + (TG)n Simple_repeat Simple_repeat 1 177 0 802 105 47 0 chr1 2513209 2513381 -240150972 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 965 26 52 26 chr1 2513409 2513756 -240150597 + (TAGA)n Simple_repeat Simple_repeat 1 356 0 430 263 20 0 chr1 2513885 2513984 -240150369 - L2 LINE L2 -1 3312 3212 2435 60 0 3 chr1 2514233 2514534 -240149819 + AluY SINE Alu 1 300 -11 699 225 0 0 chr1 2514631 2514800 -240149553 + (TG)n Simple_repeat Simple_repeat 1 169 0 419 297 26 0 chr1 2514830 2514985 -240149368 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 363 339 78 17 chr1 2516042 2516222 -240148131 + MIR SINE MIR 5 195 -67 2283 188 94 4 chr1 2517513 2518025 -240146328 + MER74A LTR ERVL 1 558 0 363 307 117 7 chr1 2518803 2518940 -240145413 + MLT1I LTR MaLR 67 218 -191 849 221 10 28 chr1 2518997 2519307 -240145046 + MLT1A1 LTR MaLR 1 365 0 323 241 69 0 chr1 2519348 2519435 -240144918 + MLT1I LTR MaLR 315 407 -2 24 0 0 0 chr1 2519775 2519799 -240144554 + AT_rich Low_complexity Low_complexity 1 24 0 2006 197 50 10 chr1 2521781 2521944 -240142409 + MSTB LTR MaLR 15 170 -256 1702 146 3 52 chr1 2521944 2522253 -240142100 + AluJb SINE Alu 1 294 -18 2006 197 50 10 chr1 2522253 2522485 -240141868 + MSTB LTR MaLR 170 426 0 526 250 60 24 chr1 2522928 2523096 -240141257 + MER5B DNA MER1_type 2 175 -3 403 247 103 7 chr1 2523107 2523253 -240141100 + MER5A DNA MER1_type 1 160 -29 321 312 263 0 chr1 2524580 2524785 -240139568 - MIR SINE MIR -1 261 3 282 179 0 0 chr1 2525622 2525678 -240138675 + GA-rich Low_complexity Low_complexity 1 56 0 195 222 0 0 chr1 2526207 2526243 -240138110 + L3b LINE CR1 1531 1566 -17 213 244 0 0 chr1 2526539 2526584 -240137769 + L2 LINE L2 3267 3311 -2 2251 211 33 21 chr1 2526617 2527128 -240137225 + MLT1E2 LTR MaLR 1 517 -109 241 254 18 0 chr1 2527170 2527225 -240137128 + LTR16B LTR ERVL 409 464 0 198 286 163 32 chr1 2528064 2528316 -240136037 + L2 LINE L2 2472 2756 -558 222 288 178 0 chr1 2528442 2528560 -240135793 + L2 LINE L2 3175 3313 0 2186 163 66 12 chr1 2529066 2529476 -240134877 - MSTB1 LTR MaLR 0 432 1 505 309 98 5 chr1 2530093 2530287 -240134066 + MIR SINE MIR 47 258 -4 441 0 0 0 chr1 2530524 2530573 -240133780 + (CA)n Simple_repeat Simple_repeat 2 50 0 248 313 143 7 chr1 2530631 2530778 -240133575 + MER5B DNA MER1_type 6 172 -6 548 278 9 52 chr1 2531129 2531359 -240132994 + L1MC5 LINE L1 7642 7861 -100 1351 153 63 4 chr1 2531417 2531672 -240132681 + L1MA7 LINE L1 6021 6290 -1 404 212 12 0 chr1 2532134 2532219 -240132134 - MLT1B LTR MaLR 0 390 305 2287 146 54 10 chr1 2532224 2532629 -240131724 + MER83 LTR ERV1 1 423 -25 225 175 0 0 chr1 2532677 2532712 -240131641 - MLT1B LTR MaLR -88 302 267 2698 113 3 3 chr1 2532712 2533076 -240131277 - THE1B LTR MaLR 0 364 1 10656 102 25 40 chr1 2533076 2534681 -240129672 - THE1B-int LTR MaLR 0 1580 1 2828 93 0 3 chr1 2534681 2535046 -240129307 - THE1B LTR MaLR 0 364 1 1367 186 15 8 chr1 2535046 2535310 -240129043 - MLT1B LTR MaLR -118 272 7 2156 132 0 3 chr1 2535750 2536061 -240128292 - AluSg SINE Alu 0 310 1 276 261 8 75 chr1 2537056 2537190 -240127163 - MIR SINE MIR -74 134 10 2312 113 0 0 chr1 2537268 2537568 -240126785 + AluSg SINE Alu 2 301 -9 359 296 47 69 chr1 2538294 2538527 -240125826 + MLT1L LTR MaLR 355 582 -33 192 248 124 29 chr1 2538874 2538979 -240125374 - MIR SINE MIR -119 143 29 437 257 90 66 chr1 2539358 2539693 -240124660 + L1ME4a LINE L1 5778 6120 -1 213 207 138 35 chr1 2541277 2541364 -240122989 - L2 LINE L2 0 3272 3177 251 308 47 47 chr1 2541626 2541798 -240122555 + MIR3 SINE MIR 22 193 -15 463 312 183 10 chr1 2542260 2542757 -240121596 - L2 LINE L2 -372 2942 2360 2861 119 24 5 chr1 2542763 2543183 -240121170 + MSTA LTR MaLR 1 428 0 8571 155 65 37 chr1 2543183 2544789 -240119564 + MSTA-int LTR MaLR 1 1651 0 2482 163 24 5 chr1 2544791 2545209 -240119144 + MSTA LTR MaLR 3 428 0 340 323 19 19 chr1 2545237 2545395 -240118958 - MER97b DNA MER1_type? -895 158 1 2437 274 152 20 chr1 2545415 2546768 -240117585 - L2 LINE L2 -1010 2304 773 1220 281 85 47 chr1 2546770 2547265 -240117088 - MLT1G1 LTR MaLR -1 594 81 4188 101 3 0 chr1 2547603 2548177 -240116176 - LTR24B LTR ERV1 0 576 1 201 227 171 0 chr1 2548334 2548422 -240115931 - L2 LINE L2 -1957 1357 1255 324 182 0 15 chr1 2548425 2548491 -240115862 - MLT1F1-int LTR MaLR -1302 69 5 578 260 143 11 chr1 2548503 2548903 -240115450 - MLT1F1 LTR MaLR -8 559 75 1206 255 195 21 chr1 2548957 2549619 -240114734 - L2 LINE L2 -2537 777 1 408 263 99 29 chr1 2550258 2550429 -240113924 + MIR SINE MIR 32 214 -48 1653 196 26 53 chr1 2550437 2550814 -240113539 + MLT1A2 LTR MaLR 1 367 -7 314 224 61 41 chr1 2551208 2551306 -240113047 - L2 LINE L2 -3 3310 3211 200 162 0 0 chr1 2551481 2551518 -240112835 - L2 LINE L2 -336 2977 2941 4213 123 41 8 chr1 2551835 2552355 -240111998 + L1MA6 LINE L1 5614 6162 -138 2276 177 16 61 chr1 2552355 2552592 -240111761 - MER66B LTR ERV1 0 486 283 1987 153 3 3 chr1 2552592 2552893 -240111460 - AluJb SINE Alu -3 309 9 2276 177 16 61 chr1 2552893 2553164 -240111189 - MER66B LTR ERV1 -203 283 1 4213 123 41 8 chr1 2553164 2553308 -240111045 + L1MA6 LINE L1 6162 6300 0 25 0 0 0 chr1 2553335 2553360 -240110993 + AT_rich Low_complexity Low_complexity 1 25 0 7928 191 12 4 chr1 2553675 2555275 -240109078 - L1 LINE L1 -2299 3847 2235 6954 132 21 5 chr1 2555258 2557088 -240107265 + L1MA5 LINE L1 4436 6300 0 * 5864 189 27 21 chr1 2557161 2558162 -240106191 + L1MB3 LINE L1 3 997 -5422 2404 54 40 78 chr1 2558162 2558535 -240105818 + L1PA6 LINE L1 5796 6154 0 5864 189 27 21 chr1 2558535 2561100 -240103253 + L1MB3 LINE L1 997 3545 -2874 16463 141 23 16 chr1 2561100 2563800 -240100553 + Tigger2 DNA MER2_type 1 2718 0 5864 189 27 21 chr1 2563800 2565244 -240099109 + L1MB3 LINE L1 3545 6201 -218 279 288 23 13 chr1 2565386 2565516 -240098837 + MIR SINE MIR 37 165 -76 224 288 12 6 chr1 2565941 2566060 -240098293 - MIR SINE MIR -33 229 110 1115 156 0 0 chr1 2567404 2567584 -240096769 + L1MA1 LINE L1 6123 6302 0 2219 122 22 35 chr1 2567675 2568044 -240096309 - THE1B LTR MaLR 0 364 1 812 211 70 6 chr1 2568495 2568666 -240095687 - MLT1D LTR MaLR 0 505 324 938 206 58 84 chr1 2568852 2569119 -240095234 - MLT1D LTR MaLR -169 336 78 2795 183 14 19 chr1 2569119 2569634 -240094719 - MLT2B2 LTR ERVL -3 512 1 938 206 58 84 chr1 2569634 2569711 -240094642 - MLT1D LTR MaLR -427 78 1 247 308 56 28 chr1 2570980 2571087 -240093266 - L2 LINE L2 -8 3305 3196 314 250 143 57 chr1 2571371 2571551 -240092802 - MIR SINE MIR -31 231 42 1403 277 133 63 chr1 2571552 2571728 -240092625 + L1ME2 LINE L1 37 199 -6197 2547 57 6 25 chr1 2571728 2572045 -240092308 - AluY SINE Alu 0 311 1 1403 277 133 63 chr1 2572045 2573382 -240090971 + L1ME2 LINE L1 199 1656 -4740 443 301 43 11 chr1 2573398 2573584 -240090769 + L1ME2 LINE L1 1754 1945 -4451 * 576 223 27 0 chr1 2573579 2573727 -240090626 + L1ME2 LINE L1 4344 4495 -1720 1965 256 28 50 chr1 2573749 2574394 -240089959 - L1ME1 LINE L1 -5 6161 5531 1710 215 78 82 chr1 2574396 2575161 -240089192 + L1ME2 LINE L1 5272 6030 -201 2080 211 37 8 chr1 2575183 2575639 -240088714 + MER54A LTR ERVL 25 697 -204 2425 145 57 5 chr1 2575639 2575841 -240088512 - MSTA LTR MaLR 0 428 238 243 0 0 0 chr1 2575841 2575868 -240088485 + (TGG)n Simple_repeat Simple_repeat 1 27 0 2425 145 57 5 chr1 2575868 2576072 -240088281 - MSTA LTR MaLR -190 238 1 6774 174 31 8 chr1 2576072 2577254 -240087099 - MSTA-int LTR MaLR 0 1651 443 809 105 0 0 chr1 2577254 2577368 -240086985 + AluSg/x SINE Alu 196 309 0 476 201 49 36 chr1 2577368 2577522 -240086831 + L1ME2 LINE L1 6075 6232 -3 244 232 11 53 chr1 2578864 2578959 -240085394 - MIR SINE MIR -132 130 40 406 330 35 20 chr1 2579930 2580133 -240084220 - MIR SINE MIR -37 225 20 486 322 28 6 chr1 2580207 2580384 -240083969 - MIR SINE MIR -59 203 23 309 263 127 36 chr1 2580481 2580687 -240083666 + MIR SINE MIR 21 258 -4 25 31 0 0 chr1 2581579 2581611 -240082742 + AT_rich Low_complexity Low_complexity 1 32 0 2593 133 53 2 chr1 2581836 2582235 -240082118 + MSTA LTR MaLR 10 428 0 493 247 105 39 chr1 2582269 2582572 -240081781 - L1ME LINE L1 -360 5802 5483 397 287 12 37 chr1 2582986 2583150 -240081203 - L1P5 LINE L1 -698 5456 5297 1280 271 119 53 chr1 2583548 2584675 -240079678 - L1ME LINE L1 -1609 4537 3337 343 291 35 57 chr1 2584757 2584898 -240079455 + L1ME4a LINE L1 5984 6121 0 869 244 153 49 chr1 2585537 2586263 -240078090 + LTR1 LTR ERV1 28 826 0 2480 113 108 5 chr1 2586478 2586866 -240077487 + MSTA LTR MaLR 1 428 0 587 316 112 47 chr1 2587102 2587252 -240077101 + L2 LINE L2 2300 2439 -874 2169 110 7 0 chr1 2587252 2587562 -240076791 - AluSx SINE Alu 0 312 1 587 316 112 47 chr1 2587562 2587580 -240076773 + L2 LINE L2 2439 2454 -859 3580 201 21 61 chr1 2587580 2588590 -240075763 - LTR5 LTR ERVK 0 969 1 587 316 112 47 chr1 2588590 2589373 -240074980 + L2 LINE L2 2454 3311 -2 434 218 224 36 chr1 2590480 2590647 -240073706 + MIR SINE MIR 4 195 -63 3039 160 4 8 chr1 2591496 2591991 -240072362 - THE1-int LTR MaLR -197 1383 891 318 143 0 0 chr1 2592052 2592115 -240072238 + (TG)n Simple_repeat Simple_repeat 2 64 0 448 186 4 18 chr1 2592122 2592343 -240072010 + CT-rich Low_complexity Low_complexity 1 218 0 272 238 0 10 chr1 2592362 2592463 -240071890 + CT-rich Low_complexity Low_complexity 1 100 0 1050 123 0 37 chr1 2592832 2592977 -240071376 - THE1C LTR MaLR 0 375 237 1998 82 59 0 chr1 2592977 2593247 -240071106 - THE1A LTR MaLR 0 355 70 530 48 0 0 chr1 2593505 2593568 -240070785 - THE1A LTR MaLR -292 63 1 1402 110 33 49 chr1 2593568 2593813 -240070540 - THE1C LTR MaLR -134 241 1 703 278 47 0 chr1 2593846 2594015 -240070338 + MIR SINE MIR 33 209 -53 450 287 169 30 chr1 2594306 2594672 -240069681 - HERVL LTR ERVL -3514 2140 1724 297 219 0 0 chr1 2595072 2595145 -240069208 + (TG)n Simple_repeat Simple_repeat 1 73 0 955 266 48 50 chr1 2595394 2595811 -240068542 + MLT1C LTR MaLR 52 467 0 259 363 9 9 chr1 2596219 2596332 -240068021 - HERVL LTR ERVL -5142 622 510 207 0 0 0 chr1 2596375 2596398 -240067955 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1732 134 57 132 chr1 2596580 2597004 -240067349 + MSTD LTR MaLR 1 392 -4 389 238 67 19 chr1 2597290 2597395 -240066958 + MLT1J LTR MaLR 109 218 -293 2242 93 3 10 chr1 2597774 2598085 -240066268 + AluSc SINE Alu 1 309 0 2216 127 116 10 chr1 2598406 2598793 -240065560 - MSTA LTR MaLR 0 428 1 1942 119 10 0 chr1 2598828 2599122 -240065231 - AluSx SINE Alu -15 297 1 243 258 67 22 chr1 2599798 2599887 -240064466 - L2 LINE L2 0 3272 3180 * 343 351 189 7 chr1 2599867 2600312 -240064041 - L2 LINE L2 -400 2914 2389 346 293 202 16 chr1 2600588 2600841 -240063512 - L2 LINE L2 -880 2434 2135 1369 173 50 92 chr1 2601011 2601392 -240062961 + MLT1A1 LTR MaLR 1 365 0 11961 173 42 22 chr1 2602529 2605139 -240059214 + L1 LINE L1 2353 5014 -1132 2192 110 3 3 chr1 2605385 2605693 -240058660 - AluSx SINE Alu -4 308 1 437 303 26 41 chr1 2605740 2605935 -240058418 + MIR SINE MIR 13 204 -58 402 115 0 0 chr1 2605967 2606028 -240058325 + (CA)n Simple_repeat Simple_repeat 2 62 0 2063 180 43 53 chr1 2606071 2606452 -240057901 + MLT1D LTR MaLR 21 397 -108 2195 112 7 0 chr1 2606452 2606757 -240057596 - AluSq SINE Alu -6 307 1 2063 180 43 53 chr1 2606757 2606865 -240057488 + MLT1D LTR MaLR 397 505 0 359 283 142 19 chr1 2608646 2608851 -240055502 - MIR SINE MIR -12 250 21 325 247 26 0 chr1 2609112 2609189 -240055164 + MLT1D LTR MaLR 40 118 -387 1384 128 0 68 chr1 2609189 2609424 -240054929 + AluJb SINE Alu 85 303 -9 1122 237 120 28 chr1 2609424 2609782 -240054571 + MLT1D LTR MaLR 107 497 -8 2150 91 3 13 chr1 2610142 2610450 -240053903 + AluY SINE Alu 1 305 -6 1045 239 90 35 chr1 2610971 2611339 -240053014 - MLT1B LTR MaLR -2 388 1 779 258 104 69 chr1 2612669 2613189 -240051164 - MER115 DNA AcHobo -1 692 107 2496 30 0 3 chr1 2613906 2614202 -240050151 - AluY SINE Alu -11 300 6 234 91 0 0 chr1 2614940 2614973 -240049380 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 275 343 0 12 chr1 2615745 2615917 -240048436 + (GGGTG)n Simple_repeat Simple_repeat 3 172 0 265 148 0 49 chr1 2616356 2616417 -240047936 - L1MC5 LINE L1 -48 7913 7856 2290 105 55 22 chr1 2616569 2616932 -240047421 - THE1C LTR MaLR 0 375 1 357 258 0 11 chr1 2616949 2617038 -240047315 + MIR SINE MIR 37 124 -138 317 235 133 15 chr1 2617038 2617234 -240047119 - L1MC5 LINE L1 -740 7221 7003 328 298 119 18 chr1 2617282 2617450 -240046903 - L1MEd LINE L1 -4956 1163 979 688 93 0 58 chr1 2617450 2617711 -240046642 + (TC)n Simple_repeat Simple_repeat 1 245 0 189 135 10 67 chr1 2617714 2617818 -240046535 + CT-rich Low_complexity Low_complexity 1 98 0 795 92 0 49 chr1 2617819 2618004 -240046349 + (TC)n Simple_repeat Simple_repeat 1 176 0 356 330 77 43 chr1 2618043 2618370 -240045983 - L1MEd LINE L1 -4941 1178 841 592 89 0 40 chr1 2618370 2618494 -240045859 + (TC)n Simple_repeat Simple_repeat 1 119 0 654 289 87 40 chr1 2618536 2619003 -240045350 - L1MC4 LINE L1 -824 7069 6481 33 43 0 0 chr1 2619206 2619253 -240045100 + AT_rich Low_complexity Low_complexity 1 47 0 1988 113 3 0 chr1 2619441 2619760 -240044593 - AluSx SINE Alu 0 320 1 295 200 24 24 chr1 2619795 2619880 -240044473 - L1ME2 LINE L1 -1 6163 6079 2313 158 40 37 chr1 2619881 2620311 -240044042 - Tigger2a DNA MER2_type -1 433 3 2539 236 72 7 chr1 2620430 2621390 -240042963 - L1ME2 LINE L1 -104 6060 5036 989 218 9 24 chr1 2621390 2621601 -240042752 - MER3 DNA MER1_type 0 209 2 669 241 109 51 chr1 2621602 2621913 -240042440 - L1ME2 LINE L1 -1103 5043 4715 1641 260 36 4 chr1 2621913 2622466 -240041887 - L1ME2 LINE L1 -2513 3633 3063 2033 32 4 0 chr1 2622705 2622953 -240041400 + L1PA3 LINE L1 5904 6152 -3 244 200 200 0 chr1 2623029 2623089 -240041264 - L2 LINE L2 -1 3312 3241 476 293 58 22 chr1 2624447 2624671 -240039682 - MIR SINE MIR -16 246 15 307 123 62 0 chr1 2624674 2624755 -240039598 + CT-rich Low_complexity Low_complexity 4 89 0 236 219 0 14 chr1 2624861 2624934 -240039419 + CT-rich Low_complexity Low_complexity 4 75 0 513 190 114 51 chr1 2626794 2626952 -240037401 + MIR SINE MIR 81 248 -14 487 191 6 6 chr1 2627521 2627694 -240036659 + (TG)n Simple_repeat Simple_repeat 2 174 0 195 146 0 0 chr1 2627721 2627762 -240036591 + (TG)n Simple_repeat Simple_repeat 2 42 0 310 281 62 25 chr1 2628246 2628406 -240035947 + LTR41 LTR ERVL 1 166 -607 307 234 31 26 chr1 2629606 2629723 -240034630 + LTR41 LTR ERVL 658 795 0 334 288 42 17 chr1 2629999 2630117 -240034236 - MIR3 SINE MIR -75 133 13 2355 99 8 8 chr1 2630196 2630550 -240033803 + THE1A LTR MaLR 2 355 0 2234 107 3 0 chr1 2630631 2630922 -240033431 + AluSp SINE Alu 1 292 -21 193 200 25 0 chr1 2631224 2631264 -240033089 + MER5A DNA MER1_type 15 55 -134 238 272 0 58 chr1 2631732 2631835 -240032518 + L1ME4a LINE L1 5975 6071 -50 1539 226 19 14 chr1 2632884 2633247 -240031106 + MLT1A1 LTR MaLR 1 365 0 230 230 126 46 chr1 2633311 2633398 -240030955 - L2 LINE L2 -4 3268 3175 5297 253 53 35 chr1 2634083 2634288 -240030065 - L1MEc LINE L1 -4158 2238 2038 2279 148 25 39 chr1 2634288 2634672 -240029681 + MSTA LTR MaLR 3 382 -46 2264 95 0 10 chr1 2634672 2634966 -240029387 - AluSc SINE Alu -18 291 1 2279 148 25 39 chr1 2634966 2635013 -240029340 + MSTA LTR MaLR 382 428 0 5297 253 53 35 chr1 2635013 2635514 -240028839 - L1MEc LINE L1 -4358 2038 1548 2113 146 7 0 chr1 2635514 2635823 -240028530 - AluJb SINE Alu -1 311 1 5297 253 53 35 chr1 2635823 2635860 -240028493 - L1MEc LINE L1 -4848 1548 1513 2261 119 0 3 chr1 2635860 2636171 -240028182 - AluSx SINE Alu -2 310 1 5297 253 53 35 chr1 2636171 2637394 -240026959 - L1MEc LINE L1 -4883 1513 234 608 271 133 28 chr1 2638341 2638559 -240025794 - MIR SINE MIR -6 256 16 420 221 43 80 chr1 2638747 2638910 -240025443 - L2 LINE L2 -1 3312 3156 204 40 0 0 chr1 2639851 2639876 -240024477 + (TAGG)n Simple_repeat Simple_repeat 2 26 0 978 158 7 7 chr1 2639923 2640498 -240023855 + (TGGA)n Simple_repeat Simple_repeat 1 575 0 439 279 99 12 chr1 2640585 2640746 -240023607 + MER96 DNA MER1_type? 1 175 0 358 280 0 28 chr1 2640930 2641037 -240023316 + MIR3 SINE MIR 53 156 -52 207 286 81 103 chr1 2641227 2641461 -240022892 - L2 LINE L2 -76 3196 2968 2503 200 44 49 chr1 2642383 2642998 -240021355 - MLT1E1 LTR MaLR 0 654 43 491 289 86 5 chr1 2643143 2643340 -240021013 + MIR SINE MIR 40 252 -10 300 153 17 0 chr1 2643665 2643724 -240020629 + L1ME4a LINE L1 6062 6121 0 350 225 22 0 chr1 2645591 2645680 -240018673 + MER5A DNA MER1_type 16 106 -83 218 244 114 41 chr1 2645894 2646017 -240018336 + L2 LINE L2 3141 3272 0 386 293 60 0 chr1 2647398 2647531 -240016822 + MLT1I LTR MaLR 8 148 -261 284 226 0 0 chr1 2647518 2647580 -240016773 + MLT1I LTR MaLR 87 148 -261 * 349 251 55 86 chr1 2647567 2647730 -240016623 + MLT1I LTR MaLR 87 244 -165 234 293 13 0 chr1 2647775 2647850 -240016503 + MLT1I LTR MaLR 334 409 0 288 0 0 0 chr1 2649583 2649615 -240014738 + (TG)n Simple_repeat Simple_repeat 1 32 0 204 40 0 0 chr1 2649614 2649639 -240014714 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 195 268 0 0 chr1 2649936 2650033 -240014320 + (TG)n Simple_repeat Simple_repeat 1 97 0 220 300 98 19 chr1 2650112 2650290 -240014063 + MIR SINE MIR 19 218 -44 674 234 188 15 chr1 2651707 2652054 -240012299 + MLT1B LTR MaLR 1 384 -6 1912 85 32 3 chr1 2652414 2652696 -240011657 + L1PB1 LINE L1 5861 6150 -1 638 213 101 43 chr1 2652842 2653049 -240011304 - MER20 DNA MER1_type 0 219 1 256 264 0 0 chr1 2653881 2653934 -240010419 + L2 LINE L2 3256 3308 -5 198 236 0 0 chr1 2654525 2654580 -240009773 + (CA)n Simple_repeat Simple_repeat 1 55 0 8642 168 77 88 chr1 2655268 2655674 -240008679 + L1MC3 LINE L1 5416 5825 -1960 1836 156 7 14 chr1 2655674 2655962 -240008391 + AluJb SINE Alu 13 298 -14 2325 121 0 0 chr1 2655964 2656270 -240008083 + AluSg SINE Alu 1 306 -4 1460 151 9 22 chr1 2656278 2656510 -240007843 + AluJo SINE Alu 63 291 -21 8642 168 77 88 chr1 2656510 2657193 -240007160 + L1MC3 LINE L1 5833 6522 -1263 577 25 25 0 chr1 2657193 2657272 -240007081 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 8642 168 77 88 chr1 2657272 2657725 -240006628 + L1MC3 LINE L1 6522 6978 -807 341 97 0 81 chr1 2657725 2657787 -240006566 + Alu SINE Alu 242 298 -4 8642 168 77 88 chr1 2657787 2658558 -240005795 + L1MC3 LINE L1 6978 7778 -7 717 246 80 34 chr1 2658631 2658990 -240005363 + MLT1A1 LTR MaLR 1 323 -42 1375 93 0 0 chr1 2659000 2659172 -240005181 - AluSp SINE Alu -10 303 132 1028 74 0 0 chr1 2659322 2659443 -240004910 - AluSp SINE Alu -192 121 1 200 355 84 0 chr1 2659992 2660099 -240004254 - MIR SINE MIR -55 207 92 242 192 0 19 chr1 2660717 2660769 -240003584 - MLT1E3 LTR MaLR -295 329 279 1551 258 28 17 chr1 2660840 2660928 -240003425 + L1M4 LINE L1 3850 3936 -2210 1021 196 25 53 chr1 2660928 2661173 -240003180 + MER8 DNA MER2_type 1 238 -1 1551 258 28 17 chr1 2661173 2661613 -240002740 + L1M4 LINE L1 3936 4387 -1759 2110 127 3 3 chr1 2661613 2661912 -240002441 + AluSq SINE Alu 1 299 -14 748 138 58 0 chr1 2661916 2662054 -240002299 - L1MA9 LINE L1 -97 6215 6070 * 584 171 0 0 chr1 2662032 2662137 -240002216 + L1MA9 LINE L1 6203 6307 -5 * 835 231 34 15 chr1 2662142 2662406 -240001947 + L1M4 LINE L1 4374 4642 -1504 1118 171 0 0 chr1 2662407 2662583 -240001770 + AluSg/x SINE Alu 130 305 -7 2173 126 17 0 chr1 2662641 2662942 -240001411 + AluSq SINE Alu 1 306 -7 921 140 11 11 chr1 2662952 2663131 -240001222 + GA-rich Low_complexity Low_complexity 1 179 0 369 0 0 0 chr1 2663131 2663172 -240001181 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 1530 259 42 18 chr1 2663172 2663721 -240000632 + L1M4 LINE L1 4694 5255 -891 1888 140 50 13 chr1 2663947 2663980 -240000373 - L1MB3 LINE L1 0 6183 6153 2501 81 3 0 chr1 2663980 2664287 -240000066 - AluSp SINE Alu -5 308 1 1888 140 50 13 chr1 2664287 2664631 -239999722 - L1MB3 LINE L1 -30 6153 5792 2162 125 3 10 chr1 2664873 2665186 -239999167 + AluSx SINE Alu 1 311 -1 2566 84 0 0 chr1 2665220 2665531 -239998822 + AluY SINE Alu 1 311 0 435 231 35 42 chr1 2666241 2666384 -239997969 + MER5A DNA MER1_type 20 161 -28 750 208 138 103 chr1 2667776 2668088 -239996265 + MLT1J LTR MaLR 8 330 -181 1680 220 111 5 chr1 2668594 2669016 -239995337 + MLT1C LTR MaLR 1 467 0 262 359 0 0 chr1 2669109 2669212 -239995141 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 483 331 68 51 chr1 2671443 2671857 -239992496 + MLT1K LTR MaLR 168 588 0 195 129 0 0 chr1 2671908 2671939 -239992414 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 * 664 111 47 23 chr1 2671936 2672107 -239992246 + GA-rich Low_complexity Low_complexity 2 176 0 221 274 17 17 chr1 2672630 2672712 -239991641 - MIR SINE MIR -122 86 5 216 284 74 0 chr1 2673716 2673797 -239990556 - MIR3 SINE MIR -8 200 114 214 313 60 0 chr1 2674223 2674306 -239990047 + L2 LINE L2 3157 3244 -28 187 256 100 22 chr1 2675946 2676036 -239988317 + MIR3 SINE MIR 64 160 -48 5631 91 17 18 chr1 2676136 2677001 -239987352 + L1PA11 LINE L1 5310 6170 -4 446 311 111 5 chr1 2677025 2677215 -239987138 - MIR SINE MIR -50 212 3 1690 201 117 47 chr1 2677235 2677687 -239986666 - MLT1D LTR MaLR 0 505 22 233 283 88 9 chr1 2677752 2677865 -239986488 - MIR SINE MIR -113 149 28 1698 201 162 16 chr1 2678090 2678577 -239985776 - MER74A LTR ERVL 0 558 1 701 246 29 6 chr1 2678608 2678783 -239985570 - MER91A DNA MER1_type 0 196 18 2140 108 0 0 chr1 2679952 2680229 -239984124 + AluSg SINE Alu 18 294 -16 236 256 67 22 chr1 2681423 2681513 -239982840 - MIR SINE MIR -81 181 88 205 31 0 0 chr1 2682018 2682050 -239982303 + L2 LINE L2 3028 3059 -213 879 310 103 13 chr1 2683411 2683798 -239980555 + MLT1K LTR MaLR 39 460 -128 701 171 0 23 chr1 2683835 2683964 -239980389 - FLAM_C SINE Alu -16 127 2 321 26 0 0 chr1 2683971 2684009 -239980344 + (TA)n Simple_repeat Simple_repeat 2 39 0 387 123 0 0 chr1 2684009 2684066 -239980287 - FAM SINE Alu -7 172 116 1101 99 0 14 chr1 2684071 2684212 -239980141 - AluSq/x SINE Alu -173 139 1 311 238 12 12 chr1 2684434 2684518 -239979835 - MER96 DNA MER1_type? -91 84 1 2507 143 11 19 chr1 2684603 2685073 -239979280 - L1MA8 LINE L1 -12 6279 5814 334 228 0 25 chr1 2685074 2685153 -239979200 - AluSp/q SINE Alu -1 302 226 475 69 14 0 chr1 2685158 2685230 -239979123 + MLT2A2 LTR ERVL 1 73 -380 * 2152 131 38 0 chr1 2685217 2685561 -239978792 + THE1B LTR MaLR 6 362 -2 1228 147 0 6 chr1 2685561 2685738 -239978615 - AluJb SINE Alu -96 216 41 1247 152 13 5 chr1 2685738 2685962 -239978391 - L1MA8 LINE L1 -479 5821 5596 240 336 59 8 chr1 2685972 2686091 -239978262 + MIR3 SINE MIR 77 201 -7 230 211 56 44 chr1 2686360 2686450 -239977903 - L1P LINE L1 -5450 696 606 217 104 62 21 chr1 2688600 2688648 -239975705 + A-rich Low_complexity Low_complexity 3 52 0 202 277 46 0 chr1 2688906 2688971 -239975382 + MIR SINE MIR 98 165 -97 259 282 15 0 chr1 2689825 2689905 -239974448 - MIR SINE MIR -92 116 36 2093 195 24 9 chr1 2690167 2690624 -239973729 + MLT1C LTR MaLR 4 467 0 352 267 62 23 chr1 2691049 2691225 -239973128 + MLT1I LTR MaLR 224 406 -3 550 285 57 0 chr1 2691810 2692003 -239972350 + MIR SINE MIR 8 211 -51 351 329 51 0 chr1 2692011 2692148 -239972205 - MIR SINE MIR -104 158 15 2082 154 12 51 chr1 2692869 2693279 -239971074 - MSTD LTR MaLR -2 394 1 670 172 0 14 chr1 2693550 2693695 -239970658 + CT-rich Low_complexity Low_complexity 2 144 0 2302 246 73 14 chr1 2694162 2694868 -239969485 - L1MEc LINE L1 -3152 3063 2330 225 0 0 0 chr1 2694868 2694893 -239969460 + (CA)n Simple_repeat Simple_repeat 2 26 0 2302 246 73 14 chr1 2694893 2695224 -239969129 - L1MEc LINE L1 -3885 2330 2020 666 90 0 10 chr1 2695225 2695325 -239969028 + L1PA5 LINE L1 6048 6146 -8 840 240 49 12 chr1 2695359 2695590 -239968763 - L1ME LINE L1 -649 5517 5275 2160 136 0 0 chr1 2695590 2695885 -239968468 + AluSx SINE Alu 1 295 -17 840 240 49 12 chr1 2695885 2695899 -239968454 - L1ME LINE L1 -891 5275 5263 2165 239 42 41 chr1 2695912 2696811 -239967542 - L1ME LINE L1 -2775 3371 2472 3276 194 34 26 chr1 2698109 2698379 -239965974 - L1MB7 LINE L1 -10 6174 5908 2079 210 15 23 chr1 2698379 2698850 -239965503 + MLT1C LTR MaLR 1 467 0 3276 194 34 26 chr1 2698850 2699306 -239965047 - L1MB7 LINE L1 -276 5908 5442 2282 129 0 0 chr1 2700018 2700329 -239964024 + AluSx SINE Alu 1 311 -1 294 356 36 12 chr1 2704240 2704565 -239959788 - L2 LINE L2 -231 3082 2752 1293 238 80 28 chr1 2704567 2704967 -239959386 - MLT1C LTR MaLR -2 465 45 * 2780 145 11 11 chr1 2704963 2705439 -239958914 - MER31A LTR ERV1 -8 477 2 675 261 97 13 chr1 2705479 2705717 -239958636 - L2 LINE L2 -556 2758 2501 2026 96 0 0 chr1 2706965 2707214 -239957139 + AluSx SINE Alu 1 249 -63 374 326 116 6 chr1 2707842 2708014 -239956339 - L1ME4a LINE L1 -236 5885 5695 186 43 0 0 chr1 2708313 2708336 -239956017 + (TG)n Simple_repeat Simple_repeat 2 24 0 246 261 0 0 chr1 2709511 2709576 -239954777 + L1ME1 LINE L1 37 101 -6295 613 152 53 94 chr1 2709583 2709754 -239954599 - MLT2B1 LTR ERVL -2 518 355 1342 263 79 22 chr1 2709771 2710265 -239954088 + L1ME1 LINE L1 121 642 -5754 811 218 45 30 chr1 2710270 2710536 -239953817 + L1ME1 LINE L1 3118 3387 -2828 241 263 0 0 chr1 2710534 2710591 -239953762 + L1ME1 LINE L1 4342 4398 -1817 * 3198 223 33 61 chr1 2710600 2710886 -239953467 + L1ME1 LINE L1 4372 4664 -1571 2279 112 0 10 chr1 2710886 2711189 -239953164 + AluSx SINE Alu 1 300 -12 3198 223 33 61 chr1 2711189 2712728 -239951625 + L1ME1 LINE L1 4664 6138 -97 1864 158 25 51 chr1 2712728 2713121 -239951232 - MLT1B LTR MaLR 0 390 8 295 183 0 0 chr1 2713122 2713182 -239951171 + L1MA10 LINE L1 6268 6327 -7 519 306 16 0 chr1 2714028 2714149 -239950204 + L2 LINE L2 3191 3313 0 228 333 152 24 chr1 2715588 2715753 -239948600 - L3 LINE CR1 -57 1520 1335 197 397 44 7 chr1 2715858 2715994 -239948359 - L3 LINE CR1 -437 1140 1000 4330 86 26 0 chr1 2716072 2716657 -239947696 - L1PA10 LINE L1 -11 6157 5558 2229 98 0 19 chr1 2716657 2717225 -239947128 + L1PA10 LINE L1 5019 5573 -595 22 0 0 0 chr1 2718624 2718646 -239945707 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr1 2718716 2718772 -239945581 + AT_rich Low_complexity Low_complexity 1 56 0 404 297 36 18 chr1 2718832 2719051 -239945302 - L1MD2 LINE L1 -5 6354 6132 231 173 0 0 chr1 2719075 2719127 -239945226 + (TG)n Simple_repeat Simple_repeat 1 52 0 306 269 0 0 chr1 2719159 2719315 -239945038 + (TG)n Simple_repeat Simple_repeat 1 156 0 264 275 0 0 chr1 2719343 2719503 -239944850 + (TG)n Simple_repeat Simple_repeat 1 160 0 354 269 0 0 chr1 2719538 2719759 -239944594 + (TG)n Simple_repeat Simple_repeat 1 221 0 246 253 0 0 chr1 2719777 2719876 -239944477 + (TG)n Simple_repeat Simple_repeat 2 100 0 307 263 34 34 chr1 2719951 2720069 -239944284 - L1MD2 LINE L1 -196 6163 6046 220 269 93 46 chr1 2721442 2721550 -239942803 + L2 LINE L2 3200 3312 -1 238 388 10 0 chr1 2722330 2722428 -239941925 + MIR SINE MIR 164 262 0 1653 214 30 42 chr1 2722605 2722932 -239941421 + MLT1C LTR MaLR 1 322 -145 3439 150 2 11 chr1 2722932 2723464 -239940889 - MER1A DNA MER1_type 0 527 1 1653 214 30 42 chr1 2723464 2723609 -239940744 + MLT1C LTR MaLR 322 467 0 188 235 0 0 chr1 2723660 2723694 -239940659 - L2 LINE L2 -74 3198 3165 443 261 0 0 chr1 2725114 2725182 -239939171 - L2 LINE L2 -24 3289 3219 2039 124 31 7 chr1 2725182 2725473 -239938880 + AluSx SINE Alu 1 298 -14 443 261 0 0 chr1 2725473 2725496 -239938857 - L2 LINE L2 -93 3220 3198 2084 129 99 40 chr1 2726003 2726047 -239938306 - MSTA LTR MaLR 0 428 388 2089 108 47 0 chr1 2726047 2726343 -239938010 + AluSx SINE Alu 1 310 -2 2084 129 99 40 chr1 2726343 2726702 -239937651 - MSTA LTR MaLR -40 388 1 376 329 17 43 chr1 2726702 2726933 -239937420 - L1MD2 LINE L1 -2049 5759 5535 6879 61 10 7 chr1 2726991 2728329 -239936024 + L1PA7 LINE L1 4813 6153 -1 207 133 0 0 chr1 2728442 2728472 -239935881 - L2 LINE L2 -13 3259 3230 487 160 191 0 chr1 2728532 2728663 -239935690 + Charlie5 DNA MER1_type 2359 2514 -98 23 54 0 0 chr1 2728674 2728711 -239935642 + AT_rich Low_complexity Low_complexity 1 37 0 1061 86 7 13 chr1 2728729 2728881 -239935472 + L1PA8 LINE L1 6019 6169 -3 448 257 155 16 chr1 2729723 2729921 -239934432 + L1MC3 LINE L1 6096 7775 -10 2504 117 16 19 chr1 2730965 2731341 -239933012 + THE1C LTR MaLR 1 375 0 207 313 12 0 chr1 2732156 2732239 -239932114 - L2 LINE L2 -28 3285 3202 184 279 73 15 chr1 2732647 2732715 -239931638 - L2 LINE L2 -335 2978 2907 1687 225 67 23 chr1 2732753 2733272 -239931081 + MER77 LTR ERV1 54 595 -10 183 314 0 43 chr1 2733368 2733438 -239930915 - L2 LINE L2 -954 2360 2294 927 230 15 0 chr1 2733863 2734067 -239930286 - MER58A DNA MER1_type -17 207 1 367 341 47 12 chr1 2734295 2734465 -239929888 - L3 LINE CR1 -693 884 709 487 318 59 25 chr1 2734478 2734714 -239929639 + MIR SINE MIR 4 247 -15 277 289 0 31 chr1 2734750 2734847 -239929506 - L3 LINE CR1 -901 676 583 189 314 48 19 chr1 2735152 2735257 -239929096 - MIR SINE MIR -23 239 132 354 299 10 0 chr1 2735258 2735355 -239928998 + MIR SINE MIR 118 215 -47 227 314 102 58 chr1 2736454 2736591 -239927762 + MIR SINE MIR 29 171 -91 498 315 118 5 chr1 2737307 2737510 -239926843 - MIR SINE MIR -5 257 32 251 316 171 0 chr1 2737658 2737810 -239926543 - MIR SINE MIR -20 242 65 407 63 16 0 chr1 2738512 2738575 -239925778 + (GA)n Simple_repeat Simple_repeat 1 64 0 234 91 0 0 chr1 2739343 2739376 -239924977 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6245 29 10 0 chr1 2739443 2740336 -239924017 + L1PA4 LINE L1 4813 6171 0 594 305 34 67 chr1 2740338 2740833 -239923520 + L1MC4a LINE L1 5425 5903 -1905 270 308 26 13 chr1 2742131 2742209 -239922144 - MIR SINE MIR -91 171 93 1656 254 32 22 chr1 2742211 2742716 -239921637 + LTR40a LTR ERVL 7 516 -3 196 212 35 129 chr1 2742719 2742804 -239921549 - MIR SINE MIR -108 100 24 290 236 11 101 chr1 2743184 2743273 -239921080 + L2 LINE L2 3209 3289 -24 306 129 0 0 chr1 2743524 2743586 -239920767 + (TGAG)n Simple_repeat Simple_repeat 2 63 0 199 283 44 44 chr1 2743742 2743855 -239920498 - MIR SINE MIR -77 131 19 5253 140 17 10 chr1 2744481 2745518 -239918835 - L1PA16 LINE L1 -16 6150 5100 26 0 0 0 chr1 2745544 2745570 -239918783 + AT_rich Low_complexity Low_complexity 1 26 0 3968 20 7 2 chr1 2745585 2746067 -239918286 - L1PA2 LINE L1 0 6155 5693 3109 31 3 0 chr1 2746067 2746448 -239917905 + L1PA2 LINE L1 5345 5726 -429 343 299 68 47 chr1 2748652 2748886 -239915467 + L1ME LINE L1 5353 5591 -530 780 248 39 60 chr1 2748886 2749217 -239915136 - MLT1I LTR MaLR -2 407 84 483 63 0 0 chr1 2749231 2749294 -239915059 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 213 121 0 0 chr1 2749300 2749333 -239915020 + (GA)n Simple_repeat Simple_repeat 2 34 0 300 82 20 20 chr1 2749333 2749382 -239914971 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 599 210 4 4 chr1 2749382 2749620 -239914733 + (TAGA)n Simple_repeat Simple_repeat 1 238 0 186 292 22 56 chr1 2749645 2749670 -239914683 + L2 LINE L2 3195 3219 -94 1497 135 154 34 chr1 2749670 2749936 -239914417 - AluSg SINE Alu -2 298 1 186 292 22 56 chr1 2749936 2749999 -239914354 + L2 LINE L2 3219 3280 -33 680 108 67 0 chr1 2750012 2750455 -239913898 + (TGGA)n Simple_repeat Simple_repeat 1 472 0 644 108 52 8 chr1 2750620 2750872 -239913481 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 180 349 23 23 chr1 2750903 2750989 -239913364 + L2 LINE L2 3195 3280 -33 555 102 66 0 chr1 2751002 2751139 -239913214 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 245 169 17 0 chr1 2751396 2751455 -239912898 + CT-rich Low_complexity Low_complexity 1 60 0 283 304 47 58 chr1 2751612 2751783 -239912570 - L2 LINE L2 -159 3113 2945 509 254 199 50 chr1 2751809 2752171 -239912182 - MLT1J2 LTR MaLR 0 450 35 188 295 247 13 chr1 2752553 2752926 -239911427 - L2 LINE L2 0 3272 2813 740 165 104 0 chr1 2753504 2753668 -239910685 - MER105 DNA DNA -7 197 17 268 317 96 54 chr1 2754044 2754211 -239910142 + MER5A DNA MER1_type 14 187 -2 488 355 0 22 chr1 2754358 2754541 -239909812 + (CA)n Simple_repeat Simple_repeat 2 180 0 1432 131 25 0 chr1 2755484 2755720 -239908633 + LTR19B LTR ERV1 339 580 0 416 233 16 0 chr1 2757049 2757178 -239907175 + CT-rich Low_complexity Low_complexity 1 131 0 399 276 146 1 chr1 2759441 2759616 -239904737 - MIR SINE MIR -16 246 49 196 236 125 0 chr1 2760652 2760724 -239903629 + L2 LINE L2 3189 3269 -3 490 249 61 36 chr1 2761059 2761224 -239903129 + MIR SINE MIR 27 195 -67 543 295 61 47 chr1 2761224 2761299 -239903054 - MLT1I LTR MaLR 0 409 337 2129 122 0 39 chr1 2761299 2761611 -239902742 - AluY SINE Alu -11 300 1 543 295 61 47 chr1 2761611 2761813 -239902540 - MLT1I LTR MaLR -72 337 128 2375 113 0 0 chr1 2761837 2762139 -239902214 + AluSx SINE Alu 1 302 -10 310 281 62 25 chr1 2762298 2762458 -239901895 + LTR41 LTR ERVL 1 166 -607 307 234 31 26 chr1 2763592 2763709 -239900644 + LTR41 LTR ERVL 658 795 0 348 294 34 17 chr1 2763985 2764104 -239900249 - MIR3 SINE MIR -75 133 13 2384 93 8 8 chr1 2764183 2764537 -239899816 + THE1A LTR MaLR 2 355 0 2211 110 3 0 chr1 2764617 2764908 -239899445 + AluSp SINE Alu 1 292 -21 193 200 25 0 chr1 2765210 2765250 -239899103 + MER5A DNA MER1_type 15 55 -134 238 272 0 58 chr1 2765718 2765821 -239898532 + L1ME4a LINE L1 5975 6071 -50 1539 226 19 14 chr1 2766870 2767233 -239897120 + MLT1A1 LTR MaLR 1 365 0 230 230 126 46 chr1 2767297 2767384 -239896969 - L2 LINE L2 -4 3268 3175 5186 251 53 44 chr1 2768069 2768274 -239896079 - L1MEc LINE L1 -4158 2238 2036 2279 148 25 39 chr1 2768274 2768658 -239895695 + MSTA LTR MaLR 3 382 -46 2303 92 0 10 chr1 2768658 2768953 -239895400 - AluSc SINE Alu -17 292 1 2279 148 25 39 chr1 2768953 2769000 -239895353 + MSTA LTR MaLR 382 428 0 5186 251 53 44 chr1 2769000 2769519 -239894834 - L1MEc LINE L1 -4360 2036 1523 2159 139 7 0 chr1 2769519 2769829 -239894524 - AluJb SINE Alu 0 312 1 5186 251 53 44 chr1 2769829 2769866 -239894487 - L1MEc LINE L1 -4873 1523 1488 2258 122 0 3 chr1 2769866 2770178 -239894175 - AluSx SINE Alu -1 311 1 5186 251 53 44 chr1 2770178 2771401 -239892952 - L1MEc LINE L1 -4908 1488 234 608 271 133 28 chr1 2772348 2772566 -239891787 - MIR SINE MIR -6 256 16 420 221 43 80 chr1 2772754 2772917 -239891436 - L2 LINE L2 -1 3312 3156 204 40 0 0 chr1 2773858 2773883 -239890470 + (TAGG)n Simple_repeat Simple_repeat 2 26 0 999 157 7 7 chr1 2773930 2774505 -239889848 + (TGGA)n Simple_repeat Simple_repeat 1 575 0 414 290 93 12 chr1 2774592 2774754 -239889599 + MER96 DNA MER1_type? 1 175 0 358 280 0 28 chr1 2774938 2775045 -239889308 + MIR3 SINE MIR 53 156 -52 207 286 81 103 chr1 2775235 2775469 -239888884 - L2 LINE L2 -76 3196 2968 2471 203 44 49 chr1 2776391 2777006 -239887347 - MLT1E1 LTR MaLR 0 654 43 476 294 86 5 chr1 2777151 2777348 -239887005 + MIR SINE MIR 40 252 -10 300 153 17 0 chr1 2777673 2777732 -239886621 + L1ME4a LINE L1 6062 6121 0 350 225 22 0 chr1 2779599 2779688 -239884665 + MER5A DNA MER1_type 16 106 -83 218 244 114 41 chr1 2779902 2780025 -239884328 + L2 LINE L2 3141 3272 0 386 293 60 0 chr1 2781406 2781539 -239882814 + MLT1I LTR MaLR 8 148 -261 284 226 0 0 chr1 2781526 2781588 -239882765 + MLT1I LTR MaLR 87 148 -261 * 349 251 55 86 chr1 2781575 2781738 -239882615 + MLT1I LTR MaLR 87 244 -165 234 293 13 0 chr1 2781783 2781858 -239882495 + MLT1I LTR MaLR 334 409 0 315 0 0 0 chr1 2783591 2783626 -239880727 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr1 2783627 2783649 -239880704 + (GA)n Simple_repeat Simple_repeat 2 23 0 195 268 0 0 chr1 2783946 2784043 -239880310 + (TG)n Simple_repeat Simple_repeat 1 97 0 237 292 98 19 chr1 2784122 2784300 -239880053 + MIR SINE MIR 19 218 -44 652 238 187 15 chr1 2785717 2786064 -239878289 + MLT1B LTR MaLR 1 384 -6 1912 85 32 3 chr1 2786423 2786705 -239877648 + L1PB1 LINE L1 5861 6150 -1 638 213 101 43 chr1 2786851 2787058 -239877295 - MER20 DNA MER1_type 0 219 1 256 264 0 0 chr1 2787890 2787943 -239876410 + L2 LINE L2 3215 3267 -5 198 236 0 0 chr1 2788534 2788589 -239875764 + (CA)n Simple_repeat Simple_repeat 1 55 0 8672 168 77 86 chr1 2789277 2789683 -239874670 + L1MC3 LINE L1 5416 5824 -1961 1836 156 7 14 chr1 2789683 2789971 -239874382 + AluJb SINE Alu 13 298 -14 2283 123 3 0 chr1 2789973 2790282 -239874071 + AluSg SINE Alu 1 310 0 1460 151 9 22 chr1 2790285 2790517 -239873836 + AluJo SINE Alu 63 291 -21 8672 168 77 86 chr1 2790517 2791200 -239873153 + L1MC3 LINE L1 5827 6515 -1270 505 28 28 0 chr1 2791200 2791271 -239873082 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 8672 168 77 86 chr1 2791271 2791724 -239872629 + L1MC3 LINE L1 6515 6970 -815 341 97 0 81 chr1 2791724 2791786 -239872567 + Alu SINE Alu 242 298 -4 8672 168 77 86 chr1 2791786 2792557 -239871796 + L1MC3 LINE L1 6970 7778 -7 717 246 80 34 chr1 2792630 2792989 -239871364 + MLT1A1 LTR MaLR 1 323 -42 1383 92 0 0 chr1 2792999 2793172 -239871181 - AluSp SINE Alu -9 304 132 1028 74 0 0 chr1 2793322 2793443 -239870910 - AluSp SINE Alu -192 121 1 200 355 84 0 chr1 2793992 2794099 -239870254 - MIR SINE MIR -55 207 92 242 192 0 19 chr1 2794717 2794769 -239869584 - MLT1E3 LTR MaLR -295 329 279 1551 258 28 17 chr1 2794840 2794928 -239869425 + L1M4 LINE L1 3850 3936 -2210 1021 196 25 53 chr1 2794928 2795173 -239869180 + MER8 DNA MER2_type 1 238 -1 1551 258 28 17 chr1 2795173 2795613 -239868740 + L1M4 LINE L1 3936 4387 -1759 2118 127 3 3 chr1 2795613 2795913 -239868440 + AluSq SINE Alu 1 300 -13 748 138 58 0 chr1 2795917 2796055 -239868298 - L1MA9 LINE L1 -97 6215 6070 * 584 171 0 0 chr1 2796033 2796138 -239868215 + L1MA9 LINE L1 6203 6307 -5 * 842 227 34 15 chr1 2796143 2796407 -239867946 + L1M4 LINE L1 4374 4642 -1504 1144 165 0 0 chr1 2796408 2796584 -239867769 + AluSg/x SINE Alu 128 303 -7 1663 261 35 23 chr1 2796584 2796643 -239867710 + L1M4 LINE L1 4648 4705 -1441 2167 130 17 0 chr1 2796643 2796944 -239867409 + AluSq SINE Alu 1 306 -7 1088 79 22 11 chr1 2796954 2797132 -239867221 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 735 62 0 0 chr1 2797132 2797229 -239867124 + (GGAA)n Simple_repeat Simple_repeat 1 97 0 1663 261 35 23 chr1 2797229 2797758 -239866595 + L1M4 LINE L1 4712 5255 -891 379 84 0 42 chr1 2798021 2798115 -239866238 - AluSp/q SINE Alu 0 303 243 241 173 0 67 chr1 2998422 2998497 -239665856 + GA-rich Low_complexity Low_complexity 3 72 0 328 282 42 33 chr1 2998573 2998786 -239665567 - MER113 DNA MER1_type? -298 223 9 407 130 0 130 chr1 2999505 2999570 -239664783 + MADE1 DNA Mariner 1 52 -28 2452 67 0 0 chr1 2999570 2999870 -239664483 - AluY SINE Alu -11 300 1 407 130 0 130 chr1 2999870 2999896 -239664457 + MADE1 DNA Mariner 52 80 0 609 244 38 38 chr1 3000283 3000521 -239663832 + LTR37B LTR ERV1 204 441 -27 25 0 0 0 chr1 3001260 3001285 -239663068 + GC_rich Low_complexity Low_complexity 1 25 0 721 278 28 0 chr1 3001310 3001522 -239662831 - MIR SINE MIR 0 262 45 3875 134 17 26 chr1 3003818 3004068 -239660285 + MER50 LTR ERV1 1 252 -482 2392 107 13 43 chr1 3004068 3004443 -239659910 + THE1B LTR MaLR 1 364 0 3875 134 17 26 chr1 3004443 3004910 -239659443 + MER50 LTR ERV1 252 711 -23 1027 257 68 31 chr1 3005268 3005725 -239658628 - MLT1H LTR MaLR 0 549 1 480 351 53 1 chr1 3005814 3006132 -239658221 + ERVL LTR ERVL 1899 2234 -2762 285 352 61 19 chr1 3006237 3006663 -239657690 + ERVL LTR ERVL 2422 2885 -2879 1785 129 58 0 chr1 3006670 3006948 -239657405 + AluSx SINE Alu 18 311 -1 198 103 0 0 chr1 3006948 3006977 -239657376 + (GA)n Simple_repeat Simple_repeat 1 29 0 792 369 38 19 chr1 3007243 3008029 -239656324 + ERVL LTR ERVL 3066 3866 -1898 494 296 32 16 chr1 3008143 3008332 -239656021 + ERVL LTR ERVL 4049 4240 -1524 529 305 80 5 chr1 3008431 3008644 -239655709 + ERVL LTR ERVL 4385 4613 -1151 2484 93 49 60 chr1 3008888 3008911 -239655442 + MER4B LTR ERV1 1 23 -587 2254 114 0 0 chr1 3008911 3009218 -239655135 + AluSq SINE Alu 1 307 -6 2484 93 49 60 chr1 3009218 3009460 -239654893 + MER4B LTR ERV1 23 261 -349 2102 117 13 0 chr1 3009460 3009760 -239654593 + AluSx SINE Alu 1 304 -8 2484 93 49 60 chr1 3009760 3009979 -239654374 + MER4B LTR ERV1 261 481 -129 6849 26 5 1 chr1 3009979 3011545 -239652808 + L1PA3 LINE L1 4608 6177 0 857 104 22 0 chr1 3011547 3011681 -239652672 + MER4B LTR ERV1 474 610 0 587 340 22 19 chr1 3011682 3011997 -239652356 + ERVL LTR ERVL 5027 5342 -422 728 305 128 31 chr1 3013403 3013918 -239650435 - MLT1K LTR MaLR -10 578 14 1378 165 53 8 chr1 3015745 3015988 -239648365 + AluJo SINE Alu 1 254 -58 1086 178 28 19 chr1 3016061 3016274 -239648079 + AluJb SINE Alu 91 305 -7 220 345 95 0 chr1 3017662 3017778 -239646575 - MIR3 SINE MIR -50 158 32 256 328 56 16 chr1 3018934 3019059 -239645294 - MIR SINE MIR -73 189 60 257 304 33 0 chr1 3019713 3019805 -239644548 + MER21B LTR ERV1 2 96 -767 359 31 0 137 chr1 3019884 3020188 -239644165 + (CTGGGG)n Simple_repeat Simple_repeat 1 262 0 742 218 38 144 chr1 3020953 3021348 -239643005 + MER51C LTR ERV1 288 640 0 231 204 0 0 chr1 3021652 3021706 -239642647 + (CA)n Simple_repeat Simple_repeat 1 54 0 251 83 0 0 chr1 3021795 3021831 -239642522 + MLT2C2 LTR ERVL 429 464 0 533 143 11 0 chr1 3021837 3021928 -239642425 - L1MB7 LINE L1 -207 5977 5886 2355 88 0 0 chr1 3023154 3023459 -239640894 + AluSx SINE Alu 1 305 -7 237 176 39 78 chr1 3024011 3024113 -239640240 + MLT1H LTR MaLR 419 516 -33 271 275 43 72 chr1 3025474 3025612 -239638741 + MIR3 SINE MIR 3 136 -72 1052 273 68 5 chr1 3026154 3026538 -239637815 - MLT2D LTR ERVL 0 414 7 299 357 65 11 chr1 3027011 3027196 -239637157 - MIR SINE MIR -2 260 66 191 174 0 65 chr1 3027305 3027351 -239637002 - MIR SINE MIR -124 138 96 229 360 23 0 chr1 3028050 3028136 -239636217 + MIR SINE MIR 77 164 -98 230 148 21 43 chr1 3028525 3028598 -239635755 + MER91 DNA MER1_type 1 35 -105 369 324 81 23 chr1 3028641 3028838 -239635515 + MIR SINE MIR 43 248 -14 1439 194 56 24 chr1 3029417 3029555 -239634798 + MLT1A1 LTR MaLR 15 147 -218 1847 147 0 66 chr1 3029555 3029676 -239634677 + AluJb SINE Alu 1 128 -184 2389 68 0 0 chr1 3029676 3029970 -239634383 - AluY SINE Alu -17 294 1 1847 147 0 66 chr1 3029970 3030182 -239634171 + AluJb SINE Alu 128 312 0 1439 194 56 24 chr1 3030182 3030383 -239633970 + MLT1A1 LTR MaLR 147 365 0 226 232 0 36 chr1 3030433 3030489 -239633864 - L2 LINE L2 -6 3307 3254 341 236 6 0 chr1 3031434 3031608 -239632745 + (CA)n Simple_repeat Simple_repeat 2 176 0 186 118 0 0 chr1 3033347 3033381 -239630972 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2085 122 148 16 chr1 3033401 3033779 -239630574 + MSTA LTR MaLR 1 428 0 558 264 110 50 chr1 3034064 3034428 -239629925 - MLT1H LTR MaLR -9 540 155 519 306 144 4 chr1 3034870 3035174 -239629179 - L2 LINE L2 -230 3083 2741 2438 121 8 32 chr1 3035633 3036006 -239628347 - THE1B LTR MaLR 0 364 1 625 275 39 14 chr1 3036615 3036822 -239627531 + MLT1K LTR MaLR 361 572 -16 1255 244 138 14 chr1 3038326 3038740 -239625613 - MLT1C LTR MaLR 0 467 3 880 261 64 16 chr1 3042728 3043042 -239621311 + MLT1J LTR MaLR 165 493 -18 217 362 143 0 chr1 3043059 3043255 -239621098 + L2 LINE L2 2583 2806 -508 267 336 39 0 chr1 3047651 3047755 -239616598 + L3b LINE CR1 1145 1252 -331 348 259 0 0 chr1 3050241 3050376 -239613977 + (CA)n Simple_repeat Simple_repeat 2 136 0 247 265 48 0 chr1 3050376 3050459 -239613894 + (CATG)n Simple_repeat Simple_repeat 4 90 0 488 242 7 0 chr1 3050461 3050614 -239613739 + (CA)n Simple_repeat Simple_repeat 1 154 0 614 243 4 6 chr1 3050628 3051138 -239613215 + (CA)n Simple_repeat Simple_repeat 1 509 0 3025 270 108 28 chr1 3051543 3053015 -239611338 + L1MC4 LINE L1 6461 7995 0 445 285 91 0 chr1 3053156 3053342 -239611011 + L1MC5 LINE L1 6980 7182 -779 301 238 0 12 chr1 3053639 3053719 -239610634 + L1MC5 LINE L1 7696 7774 -187 438 259 12 42 chr1 3058589 3058755 -239605598 + MER5B DNA MER1_type 1 161 -28 389 331 42 0 chr1 3060705 3060847 -239603506 + MIR3 SINE MIR 12 159 -49 687 137 0 0 chr1 3061609 3061733 -239602620 + (CA)n Simple_repeat Simple_repeat 1 124 0 288 130 0 0 chr1 3061835 3061881 -239602472 + (CA)n Simple_repeat Simple_repeat 1 46 0 184 151 208 57 chr1 3063515 3063568 -239600785 - L2 LINE L2 -60 3253 3193 208 268 146 0 chr1 3071284 3071407 -239592946 - L2 LINE L2 -27 3245 3105 640 105 0 0 chr1 3073840 3073935 -239590418 + L1P LINE L1 45 139 -6007 223 289 67 83 chr1 3073992 3074172 -239590181 + L2 LINE L2 3096 3272 0 483 283 54 30 chr1 3074724 3074806 -239589547 + L1M4 LINE L1 2655 2734 -3412 8247 60 4 5 chr1 3074806 3075814 -239588539 - LTR13 LTR ERVK 0 1007 1 483 283 54 30 chr1 3075814 3075897 -239588456 + L1M4 LINE L1 2734 2824 -3322 1241 171 19 0 chr1 3075899 3076115 -239588238 + AluJb SINE Alu 85 304 -8 900 292 62 54 chr1 3076118 3076491 -239587862 + L1M4 LINE L1 2855 3230 -2916 3681 49 7 0 chr1 3076536 3076986 -239587367 + L1PA4 LINE L1 5702 6154 -1 1251 139 0 0 chr1 3076986 3077173 -239587180 + AluSg/x SINE Alu 124 310 0 260 329 84 21 chr1 3077382 3077525 -239586828 + L1MC4 LINE L1 5688 5839 -1969 666 280 107 81 chr1 3077645 3079557 -239584796 + L1MC4 LINE L1 5860 7899 -143 209 83 28 0 chr1 3080479 3080515 -239583838 + (CA)n Simple_repeat Simple_repeat 1 37 0 857 325 109 19 chr1 3080515 3081238 -239583115 + L1ME3A LINE L1 5316 6103 -67 * 4656 187 57 16 chr1 3081234 3082402 -239581951 + L1MC2 LINE L1 4967 6206 -138 1926 147 3 16 chr1 3082402 3082708 -239581645 + AluJb SINE Alu 11 312 0 4656 187 57 16 chr1 3082708 3082852 -239581501 + L1MC2 LINE L1 6206 6343 -1 376 325 60 65 chr1 3084203 3084992 -239579361 - L1M4 LINE L1 -2984 3162 2378 1662 234 62 77 chr1 3085131 3086077 -239578276 + L1MC5 LINE L1 6861 7792 -169 979 182 44 0 chr1 3087530 3087711 -239576642 + MER53 DNA DNA 1 189 0 789 247 18 0 chr1 3089377 3089547 -239574806 + MIR SINE MIR 81 253 -9 2584 55 0 0 chr1 3093900 3094211 -239570142 + AluY SINE Alu 1 311 0 1679 83 0 0 chr1 3094591 3094808 -239569545 + AluSq SINE Alu 87 303 -10 1544 197 0 45 chr1 3095774 3096083 -239568270 + AluJb SINE Alu 1 295 -17 961 102 16 0 chr1 3098364 3098491 -239565862 + AluSq/x SINE Alu 1 129 -183 898 191 54 112 chr1 3098934 3099248 -239565105 + MLT1K LTR MaLR 293 588 0 232 237 105 13 chr1 3099248 3099324 -239565029 - L2 LINE L2 -5 3308 3226 745 280 92 9 chr1 3099379 3099727 -239564626 + MLT1I LTR MaLR 23 449 -1 623 318 114 56 chr1 3099954 3100627 -239563726 + L1M4 LINE L1 2890 3660 -2486 1002 221 72 0 chr1 3100627 3100835 -239563518 + MER58A DNA MER1_type 1 223 -1 623 318 114 56 chr1 3100835 3100920 -239563433 + L1M4 LINE L1 3660 3739 -2407 408 193 76 17 chr1 3100945 3101064 -239563289 - L1MC1 LINE L1 -17 6316 6191 266 236 0 0 chr1 3101135 3101190 -239563163 + L2 LINE L2 3213 3267 -5 1756 131 3 122 chr1 3101374 3101586 -239562767 - AluJo SINE Alu 0 302 145 1460 174 7 18 chr1 3101586 3101868 -239562485 - AluSc SINE Alu -30 279 1 1756 131 3 122 chr1 3101868 3101998 -239562355 - AluJo SINE Alu -157 145 1 497 253 25 81 chr1 3102289 3102649 -239561704 - L1M4 LINE L1 -812 5334 4995 269 111 44 0 chr1 3102649 3102694 -239561659 - MIR SINE MIR -118 144 98 382 319 104 8 chr1 3102995 3103283 -239561070 - L1ME LINE L1 -521 5641 5332 312 343 30 54 chr1 3103363 3103529 -239560824 - L1ME LINE L1 -1081 5065 4904 1902 163 132 37 chr1 3103540 3104001 -239560352 + MLT1D LTR MaLR 1 505 0 359 297 72 7 chr1 3104036 3104174 -239560179 - L1ME LINE L1 -1331 4815 4669 21 0 0 0 chr1 3104180 3104201 -239560152 + AT_rich Low_complexity Low_complexity 1 21 0 803 175 35 14 chr1 3104201 3104344 -239560009 + AluJo SINE Alu 26 171 -141 940 195 12 0 chr1 3104487 3104656 -239559697 + FRAM SINE Alu 1 168 -8 2863 246 161 22 chr1 3104860 3106033 -239558320 + L1MEc LINE L1 32 1367 -5029 1983 161 0 3 chr1 3106289 3106593 -239557760 - AluJb SINE Alu -9 303 1 1657 133 130 7 chr1 3106775 3107068 -239557285 - MER2 DNA MER2_type -15 330 2 21 0 0 0 chr1 3107160 3107181 -239557172 + AT_rich Low_complexity Low_complexity 1 21 0 2443 67 0 0 chr1 3107240 3107552 -239556801 - AluY SINE Alu 0 312 1 628 178 138 13 chr1 3108055 3108207 -239556146 - MER2 DNA MER2_type -16 329 159 1390 236 114 43 chr1 3109740 3110257 -239554096 - L1MD2 LINE L1 -239 6120 5567 * 8246 228 49 34 chr1 3110245 3112899 -239551454 - L1M4 LINE L1 -1314 4832 2137 2345 126 57 94 chr1 3112899 3113095 -239551258 - Tigger1 DNA MER2_type -1 2417 2215 2210 123 20 0 chr1 3113095 3113396 -239550957 + AluSx SINE Alu 1 307 -5 2345 126 57 94 chr1 3113396 3113435 -239550918 - Tigger1 DNA MER2_type -203 2215 2176 1790 174 7 0 chr1 3113435 3113723 -239550630 + AluJo SINE Alu 6 295 -17 2345 126 57 94 chr1 3113723 3114028 -239550325 - Tigger1 DNA MER2_type -242 2176 1896 2302 105 0 0 chr1 3117230 3117525 -239546828 + AluSx SINE Alu 1 295 -17 569 272 82 22 chr1 3118406 3118770 -239545583 + MLT1D LTR MaLR 1 386 -119 338 325 25 12 chr1 3118871 3119034 -239545319 + MLT1D LTR MaLR 341 505 0 3571 105 18 0 chr1 3120288 3120793 -239543560 - MER75 DNA T2_type 0 514 1 1709 175 104 19 chr1 3121731 3122096 -239542257 + MSTD LTR MaLR 1 396 0 421 222 10 10 chr1 3122096 3122195 -239542158 + L1MD1 LINE L1 6143 6241 -1 573 314 63 35 chr1 3122299 3123253 -239541100 + L1ME4a LINE L1 4350 5330 -816 655 268 136 68 chr1 3123266 3123887 -239540466 + L1MC4 LINE L1 6866 7548 -494 2496 80 0 0 chr1 3123887 3124189 -239540164 + AluY SINE Alu 1 302 -9 655 268 136 68 chr1 3124189 3124317 -239540036 + L1MC4 LINE L1 7548 7666 -376 406 296 73 14 chr1 3125390 3125610 -239538743 + L1MC5 LINE L1 7622 7854 -107 2013 129 31 0 chr1 3126324 3126618 -239537735 + AluSx SINE Alu 1 303 -9 952 212 47 0 chr1 3127413 3127606 -239536747 + Tigger7 DNA MER2_type 32 233 -2254 1037 134 85 27 chr1 3127620 3127843 -239536510 + Tigger7 DNA MER2_type 2254 2489 -2 1254 168 74 1 chr1 3128185 3128615 -239535738 + MER21B LTR ERV1 1 505 -358 534 143 0 12 chr1 3129054 3129138 -239535215 - FLAM_A SINE Alu -20 122 40 282 56 0 0 chr1 3130970 3131006 -239533347 + (CA)n Simple_repeat Simple_repeat 1 36 0 240 294 81 22 chr1 3131045 3131181 -239533172 - L2 LINE L2 -2 3311 3168 244 108 0 0 chr1 3131739 3131776 -239532577 - U2 snRNA snRNA -151 37 1 416 245 167 30 chr1 3132147 3132380 -239531973 + MLT1H LTR MaLR 97 361 -188 440 276 44 22 chr1 3132477 3132702 -239531651 + L1ME3A LINE L1 5721 5950 -220 311 191 0 11 chr1 3134190 3134279 -239530074 + (CCCTA)n Simple_repeat Simple_repeat 3 90 0 2257 113 3 6 chr1 3134728 3135039 -239529314 - AluSg SINE Alu 0 310 1 647 281 115 0 chr1 3135616 3135982 -239528371 + L1ME4a LINE L1 5481 5888 -233 4644 179 22 42 chr1 3136140 3137652 -239526701 + L1MA6 LINE L1 4800 6277 -23 220 290 30 2 chr1 3138187 3138263 -239526090 + MIR SINE MIR 25 103 -105 348 224 60 82 chr1 3138426 3138609 -239525744 - MIR SINE MIR -51 211 33 335 286 0 0 chr1 3139586 3139663 -239524690 + L2 LINE L2 3233 3309 -4 1756 155 6 54 chr1 3139898 3140047 -239524306 + AluJb SINE Alu 1 129 -183 2276 104 7 0 chr1 3140047 3140344 -239524009 + AluSx SINE Alu 1 299 -13 1756 155 6 54 chr1 3140344 3140511 -239523842 + AluJb SINE Alu 129 302 -10 24 0 0 0 chr1 3140668 3140692 -239523661 + GC_rich Low_complexity Low_complexity 1 24 0 1662 178 45 116 chr1 3142536 3143071 -239521282 + L1MB3 LINE L1 5686 6182 -1 890 199 0 6 chr1 3143790 3143978 -239520375 - FRAM SINE Alu 0 176 1 253 298 12 12 chr1 3144517 3144601 -239519752 - L3 LINE CR1 -77 1500 1417 1926 114 73 0 chr1 3144773 3145045 -239519308 + AluSx SINE Alu 11 302 -10 2382 101 7 0 chr1 3145314 3145622 -239518731 - AluSx SINE Alu -2 310 1 383 288 30 0 chr1 3145667 3145799 -239518554 + L1MC4 LINE L1 5765 5900 -1908 331 285 46 39 chr1 3146445 3146575 -239517778 + L1MC4 LINE L1 6573 6703 -1339 2031 138 10 0 chr1 3146576 3146866 -239517487 - AluJo SINE Alu -18 294 2 899 187 49 0 chr1 3147188 3147391 -239516962 + MER72 LTR ERV1 5 217 -505 2066 168 23 5 chr1 3147424 3147822 -239516531 + MER72 LTR ERV1 318 722 0 1856 163 7 10 chr1 3147880 3148181 -239516172 - AluJb SINE Alu -12 300 1 1068 118 40 79 chr1 3149325 3149553 -239514800 + MER20 DNA MER1_type 1 219 0 268 263 40 0 chr1 3149605 3149681 -239514672 + L2 LINE L2 3189 3267 -5 * 353 295 96 18 chr1 3149677 3149843 -239514510 - MIR SINE MIR -19 243 65 1733 172 3 0 chr1 3149954 3150250 -239514103 + AluSx SINE Alu 1 297 -15 341 281 62 16 chr1 3150376 3150437 -239513916 + AluSq SINE Alu 87 144 -159 1684 112 29 0 chr1 3150437 3150678 -239513675 + AluSx SINE Alu 52 299 -13 341 281 62 16 chr1 3150678 3150744 -239513609 + AluSq SINE Alu 144 220 -83 1757 172 7 3 chr1 3151856 3152159 -239512194 + AluJb SINE Alu 1 304 -8 358 214 11 11 chr1 3154009 3154098 -239510255 + MER20 DNA MER1_type 130 218 -1 251 279 25 13 chr1 3154150 3154229 -239510124 + L2 LINE L2 3188 3267 -5 931 106 0 87 chr1 3154381 3154511 -239509842 - L1PB1 LINE L1 0 6151 6036 2073 132 7 3 chr1 3154511 3154821 -239509532 - AluSx SINE Alu -1 311 1 931 106 0 87 chr1 3154821 3154851 -239509502 - L1PB1 LINE L1 -115 6036 6005 1109 163 5 5 chr1 3155047 3155237 -239509116 + AluJo SINE Alu 107 296 -16 244 333 21 11 chr1 3157854 3157947 -239506406 + MIR SINE MIR 98 191 -71 244 365 17 9 chr1 3158965 3159080 -239505273 + L2 LINE L2 2953 3068 -245 198 313 198 0 chr1 3159384 3159480 -239504873 + MIR SINE MIR 32 146 -116 221 286 0 0 chr1 3159480 3159529 -239504824 + G-rich Low_complexity Low_complexity 4 52 0 326 105 0 18 chr1 3159636 3159693 -239504660 + (GGGGA)n Simple_repeat Simple_repeat 3 58 0 424 250 85 45 chr1 3160451 3160675 -239503678 + MLT1K LTR MaLR 356 588 0 372 237 61 69 chr1 3160947 3161078 -239503275 - L2 LINE L2 0 3313 3184 225 94 0 0 chr1 3161091 3161123 -239503230 + (CAGGG)n Simple_repeat Simple_repeat 3 34 0 300 296 72 13 chr1 3161123 3161275 -239503078 - L2 LINE L2 -270 3043 2883 1525 124 87 4 chr1 3161302 3161577 -239502776 - AluJb SINE Alu -14 298 1 1406 246 54 39 chr1 3161582 3162115 -239502238 + MER74A LTR ERVL 14 554 -4 269 347 151 8 chr1 3162115 3162354 -239501999 - L2 LINE L2 -418 2896 2624 192 349 121 6 chr1 3162694 3162860 -239501493 + L2 LINE L2 3075 3259 -54 948 235 70 78 chr1 3163450 3163975 -239500378 - L1M4 LINE L1 -2238 3908 3381 1782 170 83 9 chr1 3163975 3164299 -239500054 + MER7A DNA MER2_type 1 346 0 948 235 70 78 chr1 3164299 3165006 -239499347 - L1M4 LINE L1 -2765 3381 2486 1487 184 27 4 chr1 3165010 3165485 -239498868 + MER68 LTR ERV1 3 562 0 702 271 46 8 chr1 3165486 3165726 -239498627 - L1M4 LINE L1 -3688 2458 2210 683 265 62 65 chr1 3165746 3166017 -239498336 + L1MC4a LINE L1 5613 5884 -1924 1936 125 7 7 chr1 3166017 3166314 -239498039 + AluSx SINE Alu 2 298 -14 683 265 62 65 chr1 3166314 3166397 -239497956 + L1MC4a LINE L1 5884 5966 -1842 315 267 35 0 chr1 3166711 3166797 -239497556 + MIR SINE MIR 128 216 -46 194 242 0 76 chr1 3166821 3166887 -239497466 + L2 LINE L2 3206 3266 -6 1487 182 163 0 chr1 3167534 3167847 -239496506 - MER47A DNA MER2_type 0 366 3 250 312 91 0 chr1 3168590 3168667 -239495686 + MER91A DNA MER1_type 2 85 -111 4680 223 99 2 chr1 3169109 3170426 -239493927 + Charlie1 DNA MER1_type 1 2755 -6 239 281 47 0 chr1 3170838 3170902 -239493451 + MLT1K LTR MaLR 193 259 -329 462 207 9 17 chr1 3170980 3171096 -239493257 + MLT1D LTR MaLR 391 505 0 435 273 9 0 chr1 3172289 3172399 -239491954 - MIR SINE MIR -75 187 77 439 213 131 0 chr1 3173177 3173299 -239491054 + Charlie1 DNA MER1_type 2337 2474 -287 185 350 90 11 chr1 3173887 3174064 -239490289 - L2 LINE L2 -1038 2276 2086 366 254 79 32 chr1 3174349 3174475 -239489878 + MER5A DNA MER1_type 3 134 -55 256 221 29 150 chr1 3174372 3174478 -239489875 - MER5A DNA MER1_type -24 165 78 * 2060 139 0 13 chr1 3174478 3174794 -239489559 - AluSx SINE Alu 0 312 1 256 221 29 150 chr1 3174794 3174827 -239489526 - MER5A DNA MER1_type -111 78 43 316 281 30 59 chr1 3175601 3175736 -239488617 - MER5B DNA MER1_type -29 149 19 1276 135 18 11 chr1 3175917 3176168 -239488185 + L1MA1 LINE L1 5961 6220 -82 198 103 0 0 chr1 3176176 3176205 -239488148 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 2028 136 0 13 chr1 3176214 3176524 -239487829 - AluSx SINE Alu -6 306 1 608 97 11 0 chr1 3176524 3176610 -239487743 + L1MA1 LINE L1 6209 6298 -4 258 298 36 0 chr1 3176733 3176817 -239487536 + MER5A DNA MER1_type 14 100 -89 338 289 30 52 chr1 3177473 3177608 -239486745 + MLT1J LTR MaLR 326 457 -54 370 284 99 12 chr1 3177653 3177815 -239486538 + HAL1 LINE L1 1680 1855 -652 33 0 0 0 chr1 3178137 3178170 -239486183 + AT_rich Low_complexity Low_complexity 1 33 0 2433 67 0 13 chr1 3179226 3179540 -239484813 + AluY SINE Alu 1 310 -1 2047 108 0 17 chr1 3180284 3180572 -239483781 + AluSx SINE Alu 1 283 -29 266 243 0 75 chr1 3180751 3180858 -239483495 - L2 LINE L2 -241 3031 2933 2352 94 0 0 chr1 3181479 3181788 -239482565 - AluSx SINE Alu -3 309 1 1914 120 7 7 chr1 3181821 3182112 -239482241 - AluJo SINE Alu -21 291 1 2103 132 0 0 chr1 3182953 3183249 -239481104 - AluSx SINE Alu -16 296 1 481 296 131 5 chr1 3183774 3183980 -239480373 + MIR SINE MIR 2 233 -29 420 294 132 47 chr1 3184102 3184398 -239479955 - MLT1J1 LTR MaLR 0 446 126 2113 78 42 0 chr1 3185275 3185558 -239478795 - AluY SINE Alu -16 295 1 1945 152 76 19 chr1 3186202 3186570 -239477783 - MLT1B LTR MaLR 0 390 2 2283 96 3 0 chr1 3186605 3186907 -239477446 + AluSq SINE Alu 1 303 -10 2312 89 3 0 chr1 3187192 3187494 -239476859 + AluSx SINE Alu 1 303 -9 297 0 0 0 chr1 3187494 3187527 -239476826 + (TA)n Simple_repeat Simple_repeat 1 33 0 639 214 68 24 chr1 3188471 3188654 -239475699 - MLT1D LTR MaLR -190 200 28 2316 76 0 0 chr1 3188873 3189174 -239475179 + AluY SINE Alu 1 301 -10 2111 121 0 19 chr1 3190400 3190715 -239473638 + AluSx SINE Alu 1 309 -3 2220 97 3 0 chr1 3191520 3191828 -239472525 - AluSc SINE Alu 0 309 1 1967 86 0 70 chr1 3192135 3192436 -239471917 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr1 3192436 3192460 -239471893 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 254 29 29 0 chr1 3193810 3193845 -239470508 + (TG)n Simple_repeat Simple_repeat 2 37 0 285 221 0 26 chr1 3193850 3193927 -239470426 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 609 300 91 11 chr1 3194954 3195340 -239469013 + MLT1C LTR MaLR 6 461 -6 2382 70 0 19 chr1 3196291 3196627 -239467726 + AluY SINE Alu 2 331 0 463 265 37 7 chr1 3198463 3198599 -239465754 - MIR3 SINE MIR 0 208 69 1829 126 30 43 chr1 3198661 3198805 -239465548 + AluJb SINE Alu 2 146 -166 2430 62 13 0 chr1 3198805 3199109 -239465244 + AluSp SINE Alu 1 308 -5 1829 126 30 43 chr1 3199109 3199265 -239465088 + AluJb SINE Alu 146 298 -14 2034 95 44 7 chr1 3199821 3200115 -239464238 + AluSg SINE Alu 1 305 -5 223 328 0 0 chr1 3200455 3200519 -239463834 - L2 LINE L2 -3 3310 3247 189 171 0 0 chr1 3201212 3201247 -239463106 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2057 104 0 78 chr1 3201449 3201784 -239462569 + AluSx SINE Alu 1 309 -3 266 340 57 0 chr1 3202968 3203074 -239461279 + MIR SINE MIR 81 192 -70 1256 53 0 0 chr1 3203496 3203647 -239460706 - AluYa8 SINE Alu -12 298 148 278 45 159 0 chr1 3203661 3203705 -239460648 - AluY SINE Alu -120 181 131 2361 52 0 3 chr1 3203705 3204022 -239460331 - AluY SINE Alu 0 316 1 451 238 98 0 chr1 3204202 3204324 -239460029 - L1ME4a LINE L1 -23 6098 5965 2131 122 0 0 chr1 3204510 3204814 -239459539 + AluSx SINE Alu 1 304 -8 2127 105 31 0 chr1 3204903 3205189 -239459164 - AluSx SINE Alu -17 295 1 2459 55 0 0 chr1 3205217 3205509 -239458844 + AluY SINE Alu 1 292 -19 1793 170 38 57 chr1 3205781 3206151 -239458202 - MLT1A1 LTR MaLR -1 364 2 988 159 6 24 chr1 3206214 3206384 -239457969 - FAM SINE Alu -4 171 5 310 372 25 0 chr1 3206428 3206549 -239457804 - L1ME4a LINE L1 -2038 5770 5647 237 264 94 28 chr1 3207061 3207167 -239457186 + MER5A DNA MER1_type 58 170 -19 2387 90 0 0 chr1 3208240 3208550 -239455803 + AluSg SINE Alu 1 310 0 505 277 144 5 chr1 3209100 3209302 -239455051 + MIR SINE MIR 8 226 -36 414 369 7 0 chr1 3209487 3209636 -239454717 + MIR SINE MIR 94 243 -19 1738 165 0 4 chr1 3209862 3210135 -239454218 - AluJb SINE Alu -17 295 24 988 293 123 22 chr1 3210140 3210804 -239453549 - L2 LINE L2 -288 3025 2293 470 276 24 86 chr1 3211127 3211239 -239453114 + MIR SINE MIR 54 149 -113 2192 120 0 7 chr1 3211239 3211547 -239452806 + AluSx SINE Alu 1 306 -6 470 276 24 86 chr1 3211547 3211644 -239452709 + MIR SINE MIR 149 250 -12 309 135 0 0 chr1 3212069 3212121 -239452232 + (CA)n Simple_repeat Simple_repeat 1 52 0 1657 198 36 33 chr1 3212176 3212540 -239451813 + MLT1A1 LTR MaLR 1 365 0 356 279 29 0 chr1 3214598 3214702 -239449651 + MIR SINE MIR 59 165 -97 204 211 0 0 chr1 3216101 3216139 -239448214 + CT-rich Low_complexity Low_complexity 2 39 0 1763 52 39 4 chr1 3216347 3216577 -239447776 - AluY SINE Alu -11 300 63 1886 137 58 0 chr1 3216625 3216918 -239447435 - AluSx SINE Alu -2 310 1 816 163 0 0 chr1 3216961 3217090 -239447263 + AluJb SINE Alu 169 297 -15 2097 134 0 7 chr1 3217107 3217414 -239446939 + AluSx SINE Alu 2 306 -6 311 317 145 0 chr1 3218001 3218222 -239446131 - L2 LINE L2 -186 3086 2834 493 360 87 13 chr1 3218920 3219220 -239445133 + L1MC4a LINE L1 5506 5827 -1981 638 215 85 22 chr1 3219745 3219968 -239444385 + MLT1C LTR MaLR 6 242 -225 260 212 50 10 chr1 3220157 3220256 -239444097 + (CAGCC)n Simple_repeat Simple_repeat 4 106 0 2203 95 0 7 chr1 3220393 3220689 -239443664 + AluSg SINE Alu 1 294 -16 2209 99 7 0 chr1 3220713 3221007 -239443346 + AluSp SINE Alu 1 296 -17 2280 92 0 7 chr1 3221619 3221925 -239442428 - AluSx SINE Alu -8 304 1 848 326 19 19 chr1 3224734 3225163 -239439190 + L1MC4 LINE L1 5643 6071 -1971 * 1780 236 38 11 chr1 3224782 3225260 -239439093 + L1MB7 LINE L1 5686 6176 -8 1670 154 20 29 chr1 3225273 3225579 -239438774 + AluSx SINE Alu 1 303 -9 2347 98 0 0 chr1 3225905 3226210 -239438143 + AluSx SINE Alu 1 305 -7 763 178 0 22 chr1 3226524 3226659 -239437694 + FLAM_C SINE Alu 1 132 -1 6792 61 41 2 chr1 3226683 3227360 -239436993 + LTR13 LTR ERVK 1 727 -280 204 40 0 0 chr1 3227360 3227385 -239436968 + (TC)n Simple_repeat Simple_repeat 2 26 0 6792 61 41 2 chr1 3227385 3227664 -239436689 + LTR13 LTR ERVK 727 994 -13 791 143 71 0 chr1 3227700 3227826 -239436527 + AluJb SINE Alu 154 288 -24 853 181 0 0 chr1 3227826 3227959 -239436394 + FLAM_C SINE Alu 1 133 0 2118 108 3 7 chr1 3228016 3228313 -239436040 + AluSx SINE Alu 1 296 -16 2489 65 0 0 chr1 3228324 3228630 -239435723 + AluSc SINE Alu 1 306 -3 1213 112 0 0 chr1 3228630 3228800 -239435553 + AluSq SINE Alu 134 303 -10 571 252 95 25 chr1 3228800 3229042 -239435311 + L1ME1 LINE L1 5820 6078 -88 2345 113 33 141 chr1 3229051 3229247 -239435106 - Tigger1 DNA MER2_type 0 2418 2202 2373 65 3 0 chr1 3229247 3229540 -239434813 + AluY SINE Alu 4 297 -14 2345 113 33 141 chr1 3229540 3229655 -239434698 - Tigger1 DNA MER2_type -216 2202 2076 2073 88 7 4 chr1 3229655 3229928 -239434425 - AluSx SINE Alu -14 298 25 2345 113 33 141 chr1 3229928 3230057 -239434296 - Tigger1 DNA MER2_type -342 2076 1935 1787 169 0 13 chr1 3230057 3230364 -239433989 + AluJo SINE Alu 1 303 -9 2345 113 33 141 chr1 3230364 3230416 -239433937 - Tigger1 DNA MER2_type -483 1935 1879 1509 106 13 13 chr1 3230416 3230643 -239433710 - AluSc SINE Alu -16 293 67 2345 113 33 141 chr1 3230643 3230673 -239433680 - Tigger1 DNA MER2_type -539 1879 1962 2354 70 0 3 chr1 3230673 3230971 -239433382 + AluY SINE Alu 1 297 -14 2345 113 33 141 chr1 3230971 3231039 -239433314 - Tigger1 DNA MER2_type -455 1963 1889 4901 167 162 5 chr1 3231039 3232097 -239432256 - MER52A LTR ERV1 0 1755 532 195 232 0 0 chr1 3232561 3232617 -239431736 + (CTG)n Simple_repeat Simple_repeat 2 57 0 230 276 0 0 chr1 3232624 3232682 -239431671 - MER52A LTR ERV1 -1697 58 1 384 134 0 0 chr1 3232682 3232749 -239431604 - Tigger1 DNA MER2_type -524 1894 1828 1825 135 56 7 chr1 3232749 3233037 -239431316 - AluSx SINE Alu -10 302 1 484 159 71 26 chr1 3233038 3233151 -239431202 - Tigger1 DNA MER2_type -830 1588 1471 1225 140 0 0 chr1 3233151 3233330 -239431023 - AluSg/x SINE Alu 0 312 134 1929 126 0 7 chr1 3233330 3233616 -239430737 - AluY SINE Alu -7 304 21 8379 116 18 45 chr1 3233618 3233715 -239430638 - Tigger1 DNA MER2_type -940 1478 1380 2336 169 49 5 chr1 3233715 3234123 -239430230 + MSTB1 LTR MaLR 3 428 -4 8379 116 18 45 chr1 3234123 3234210 -239430143 - Tigger1 DNA MER2_type -1038 1380 1292 2070 112 0 11 chr1 3234210 3234549 -239429804 - AluSx SINE Alu 0 336 1 8379 116 18 45 chr1 3234549 3234560 -239429793 - Tigger1 DNA MER2_type -1126 1292 1282 2292 105 0 0 chr1 3234560 3234865 -239429488 - AluSg SINE Alu -5 305 1 8379 116 18 45 chr1 3234865 3235119 -239429234 - Tigger1 DNA MER2_type -1136 1282 1023 2148 110 3 13 chr1 3235119 3235418 -239428935 - AluSx SINE Alu -16 296 1 8379 116 18 45 chr1 3235418 3235519 -239428834 - Tigger1 DNA MER2_type -1395 1023 921 2126 132 0 0 chr1 3235519 3235822 -239428531 + AluSx SINE Alu 1 303 -9 8379 116 18 45 chr1 3235822 3236304 -239428049 - Tigger1 DNA MER2_type -1497 921 428 1978 126 20 3 chr1 3236304 3236606 -239427747 - AluSx SINE Alu -5 307 1 8379 116 18 45 chr1 3236606 3237013 -239427340 - Tigger1 DNA MER2_type -1990 428 12 2155 102 3 3 chr1 3237013 3237307 -239427046 - AluSx SINE Alu -18 294 1 8379 116 18 45 chr1 3237307 3237339 -239427014 - Tigger1 DNA MER2_type -2406 12 39 2296 100 0 0 chr1 3237339 3237639 -239426714 + AluSq SINE Alu 1 300 -13 8379 116 18 45 chr1 3237639 3237678 -239426675 - Tigger1 DNA MER2_type -2378 40 1 199 224 20 0 chr1 3238422 3238471 -239425882 + MIR SINE MIR 98 147 -61 581 186 12 43 chr1 3238694 3238752 -239425601 + L1MC/D LINE L1 5144 5202 -944 2289 38 52 0 chr1 3238752 3239040 -239425313 + AluY SINE Alu 1 303 -8 581 186 12 43 chr1 3239040 3239142 -239425211 + L1MC/D LINE L1 5202 5299 -847 1238 130 42 28 chr1 3239142 3239261 -239425092 + AluSq SINE Alu 1 117 -196 1403 169 9 123 chr1 3239261 3239411 -239424942 + AluJb SINE Alu 2 167 -135 2415 60 0 7 chr1 3239411 3239710 -239424643 + AluY SINE Alu 1 297 -14 1403 169 9 123 chr1 3239710 3239730 -239424623 + AluJb SINE Alu 167 188 -114 2084 113 0 10 chr1 3239730 3240040 -239424313 + AluSq SINE Alu 2 308 -5 1403 169 9 123 chr1 3240040 3240194 -239424159 + AluJb SINE Alu 188 290 -12 2184 100 7 0 chr1 3240203 3240503 -239423850 + AluSq SINE Alu 1 302 -11 1238 130 42 28 chr1 3240503 3240588 -239423765 + AluSq SINE Alu 124 218 -95 33 0 0 0 chr1 3240617 3240650 -239423703 + AT_rich Low_complexity Low_complexity 1 33 0 1701 153 3 0 chr1 3240670 3240958 -239423395 + L1MC/D LINE L1 5324 5612 -732 933 126 0 22 chr1 3241010 3241145 -239423208 + FLAM_C SINE Alu 1 132 -1 2195 73 0 0 chr1 3241545 3241820 -239422533 + AluY SINE Alu 1 275 -36 270 0 0 0 chr1 3241824 3241854 -239422499 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2405 61 3 0 chr1 3242656 3242950 -239421403 - AluY SINE Alu -16 295 1 374 226 2 11 chr1 3243120 3243221 -239421132 + L1M4 LINE L1 4934 5035 -1111 1703 159 7 21 chr1 3243221 3243510 -239420843 - AluJo SINE Alu -19 293 9 1660 159 66 17 chr1 3243541 3243830 -239420523 + AluSx SINE Alu 1 303 -9 2209 190 37 36 chr1 3243863 3244074 -239420279 + L1MB3 LINE L1 4668 4877 -1299 2057 99 44 7 chr1 3244074 3244367 -239419986 + AluSg SINE Alu 1 304 -6 2209 190 37 36 chr1 3244367 3244803 -239419550 + L1MB3 LINE L1 4877 5318 -858 442 76 38 13 chr1 3244803 3244882 -239419471 + L1MA5 LINE L1 6220 6300 0 2209 190 37 36 chr1 3244882 3244902 -239419451 + L1MB3 LINE L1 5318 5336 -840 302 318 0 37 chr1 3244954 3245061 -239419292 - L1MC4 LINE L1 -1336 6706 6604 2511 165 35 4 chr1 3245099 3245608 -239418745 + L1MB3 LINE L1 5304 5828 -355 2249 50 0 14 chr1 3245609 3245887 -239418466 + AluY SINE Alu 1 274 -37 2234 71 27 3 chr1 3245888 3246185 -239418168 + AluSc SINE Alu 1 304 -5 1493 166 37 24 chr1 3246286 3246582 -239417771 + AluJb SINE Alu 1 300 -12 2155 114 3 0 chr1 3246629 3246935 -239417418 - AluSq SINE Alu -6 307 1 2454 61 0 0 chr1 3246946 3247243 -239417110 - AluY SINE Alu -14 297 1 1010 173 9 91 chr1 3247296 3247465 -239416888 - AluJo SINE Alu -15 297 150 2346 78 0 0 chr1 3247465 3247760 -239416593 - AluY SINE Alu -16 295 1 1010 173 9 91 chr1 3247760 3247821 -239416532 - AluJo SINE Alu -162 150 86 1804 205 13 9 chr1 3247838 3248264 -239416089 + L1MB8 LINE L1 5220 5642 -532 242 196 71 0 chr1 3248326 3248382 -239415971 - MER21B LTR ERV1 -111 752 693 764 231 12 12 chr1 3248393 3248566 -239415787 - MER21B LTR ERV1 -652 211 39 450 214 8 26 chr1 3248590 3248707 -239415646 + L1MB8 LINE L1 6055 6169 -9 206 233 0 155 chr1 3249975 3250091 -239414262 - MER5A DNA MER1_type -30 159 62 396 319 65 14 chr1 3250091 3250334 -239414019 - L1MC5 LINE L1 -30 7931 7669 1611 194 0 25 chr1 3250334 3250649 -239413704 + AluJb SINE Alu 5 311 -1 396 319 65 14 chr1 3250649 3250697 -239413656 - L1MC5 LINE L1 -292 7669 7625 364 286 202 19 chr1 3250862 3251075 -239413278 + L1ME1 LINE L1 5910 6161 -5 379 279 35 64 chr1 3251076 3251248 -239413105 - L1MC5 LINE L1 -259 7702 7536 1418 83 0 0 chr1 3251684 3251864 -239412489 - AluSq SINE Alu 0 313 134 2307 73 0 3 chr1 3251865 3252165 -239412188 - AluY SINE Alu -12 299 1 2181 103 7 3 chr1 3252213 3252513 -239411840 + AluSx SINE Alu 1 301 -11 2427 65 0 10 chr1 3252513 3252822 -239411531 + AluY SINE Alu 1 306 -5 203 335 40 74 chr1 3252884 3253060 -239411293 - L2 LINE L2 0 3313 3144 232 188 150 50 chr1 3253250 3253330 -239411023 - MER3 DNA MER1_type -1 208 121 1406 113 39 18 chr1 3253331 3253560 -239410793 + AluSg/x SINE Alu 76 309 -1 2178 113 0 3 chr1 3254045 3254346 -239410007 + AluSx SINE Alu 1 300 -12 2201 89 7 0 chr1 3254410 3254715 -239409638 + AluSx SINE Alu 1 307 0 1545 82 0 0 chr1 3254770 3254965 -239409388 + AluSx SINE Alu 1 195 -117 2152 96 0 23 chr1 3254973 3255275 -239409078 + AluSx SINE Alu 1 295 -17 261 369 31 41 chr1 3255414 3255609 -239408744 + MIR SINE MIR 20 212 -50 27 18 8 0 chr1 3256806 3256884 -239407469 + GC_rich Low_complexity Low_complexity 1 34 0 27 73 0 0 chr1 3257224 3257279 -239407074 + GC_rich Low_complexity Low_complexity 1 55 0 2546 61 0 0 chr1 3258338 3258649 -239405704 - AluY SINE Alu 0 311 1 819 217 18 24 chr1 3258649 3258807 -239405546 - AluJo/FRAM SINE Alu -7 295 137 3971 141 157 57 chr1 3258812 3260050 -239404303 - pTR5 LTR ERV1 -111 2025 6 863 97 0 0 chr1 3260051 3260164 -239404189 - AluSq/x SINE Alu -197 115 3 228 297 148 0 chr1 3260272 3260310 -239404043 + MIR SINE MIR 71 102 -160 1829 171 0 16 chr1 3260310 3260626 -239403727 - AluJb SINE Alu -1 311 1 228 297 148 0 chr1 3260626 3260688 -239403665 + MIR SINE MIR 102 186 -76 903 181 75 0 chr1 3260869 3261029 -239403324 + FAM SINE Alu 1 172 -3 1616 251 147 37 chr1 3261511 3261914 -239402439 + L2 LINE L2 1723 2080 -1233 1744 141 52 21 chr1 3261914 3262205 -239402148 - AluJo SINE Alu -12 300 1 1616 251 147 37 chr1 3262205 3262221 -239402132 + L2 LINE L2 2080 2093 -1220 2147 121 0 0 chr1 3262221 3262526 -239401827 - AluSx SINE Alu -7 305 1 1616 251 147 37 chr1 3262526 3263307 -239401046 + L2 LINE L2 2093 3307 -6 2395 76 0 0 chr1 3263442 3263743 -239400610 + AluY SINE Alu 1 301 -10 2081 121 3 0 chr1 3263773 3264062 -239400291 + AluSg SINE Alu 1 290 -20 1167 188 31 5 chr1 3264062 3264285 -239400068 - AluJb SINE Alu -83 229 1 2426 76 0 0 chr1 3264332 3264636 -239399717 + AluY SINE Alu 1 304 -7 901 171 213 43 chr1 3264668 3264926 -239399427 + AluJb SINE Alu 1 302 0 314 315 132 24 chr1 3265012 3265225 -239399128 + L1ME3A LINE L1 5926 6161 -9 1969 126 13 13 chr1 3265261 3265570 -239398783 - AluY SINE Alu -2 309 1 1805 156 0 34 chr1 3265871 3266014 -239398339 + AluJo SINE Alu 1 147 -165 2257 73 0 33 chr1 3266014 3266316 -239398037 + AluY SINE Alu 7 298 -13 1805 156 0 34 chr1 3266316 3266493 -239397860 + AluJo SINE Alu 147 310 -2 1408 145 161 0 chr1 3266992 3267247 -239397106 + AluJb SINE Alu 5 300 -2 2225 84 3 17 chr1 3267274 3267573 -239396780 - AluSp SINE Alu -18 295 1 1935 148 0 13 chr1 3267573 3267876 -239396477 - AluJb SINE Alu -13 299 1 2406 21 0 3 chr1 3268182 3268515 -239395838 + AluY SINE Alu 1 332 0 730 304 26 7 chr1 3269239 3269483 -239394870 + MIR SINE MIR 3 249 -13 287 226 0 0 chr1 3269526 3269579 -239394774 - L2 LINE L2 -12 3260 3208 428 250 43 43 chr1 3269643 3269807 -239394546 - L1ME3A LINE L1 -36 6134 5971 253 271 0 0 chr1 3269811 3269881 -239394472 - L1ME3A LINE L1 -317 5853 5784 2297 98 10 0 chr1 3269902 3270208 -239394145 - AluY SINE Alu -2 309 1 2004 122 3 35 chr1 3270213 3270524 -239393829 - AluSx SINE Alu -11 301 1 642 238 86 0 chr1 3270527 3270796 -239393557 - L1M4 LINE L1 -2803 3343 3052 1060 116 0 0 chr1 3270798 3270945 -239393408 - AluSx SINE Alu -9 301 155 762 147 0 0 chr1 3270945 3271054 -239393299 - AluSx SINE Alu -204 109 1 419 132 26 13 chr1 3271060 3271158 -239393195 - AluJ/FRAM SINE Alu 0 312 232 2292 94 7 0 chr1 3271188 3271495 -239392858 - AluSp SINE Alu 0 313 5 2152 103 3 3 chr1 3271550 3271842 -239392511 + AluSx SINE Alu 7 298 -14 461 241 0 71 chr1 3271842 3271996 -239392357 - L1M4 LINE L1 -3136 3010 2873 2084 114 3 3 chr1 3271996 3272294 -239392059 + AluSp SINE Alu 1 298 -15 461 241 0 71 chr1 3272294 3272351 -239392002 - L1M4 LINE L1 -3273 2873 2814 1184 131 11 0 chr1 3272354 3272537 -239391816 - AluSq SINE Alu 0 313 129 1417 130 0 5 chr1 3272562 3272777 -239391576 - AluSq SINE Alu -5 308 95 672 172 78 0 chr1 3272778 3272894 -239391459 - AluSq SINE Alu -177 135 11 1362 241 23 10 chr1 3272896 3273290 -239391063 - L1M4 LINE L1 -3303 2843 2445 1720 164 31 0 chr1 3273293 3273585 -239390768 - AluJb SINE Alu -11 301 1 1370 207 24 24 chr1 3273663 3273762 -239390591 + AluJo SINE Alu 17 115 -197 2525 61 0 0 chr1 3273762 3274073 -239390280 - AluY SINE Alu 0 311 1 1370 207 24 24 chr1 3274073 3274268 -239390085 + AluJo SINE Alu 114 311 -1 320 119 0 0 chr1 3274279 3274341 -239390012 + L1MA4 LINE L1 6119 6183 -120 2002 128 3 16 chr1 3274419 3274724 -239389629 - AluSx SINE Alu -11 301 1 1806 263 141 3 chr1 3274755 3275485 -239388868 + HERV16 LTR ERVL 1630 2460 -2536 766 163 0 92 chr1 3275506 3275554 -239388799 - L1MB3 LINE L1 -1 6182 6131 2169 123 0 0 chr1 3275554 3275855 -239388498 + AluSq SINE Alu 1 301 -12 766 163 0 92 chr1 3275855 3275870 -239388483 - L1MB3 LINE L1 -52 6131 6116 1889 160 0 3 chr1 3275870 3276164 -239388189 - AluJo SINE Alu -19 293 1 2577 40 0 0 chr1 3276174 3276477 -239387876 - AluY SINE Alu -8 303 1 766 163 0 92 chr1 3276477 3276640 -239387713 - L1MB3 LINE L1 -76 6107 5966 291 238 0 0 chr1 3276641 3276704 -239387649 + HERV16 LTR ERVL 2469 2531 -2465 303 238 132 17 chr1 3277091 3277218 -239387135 + MER69 DNA AcHobo 2385 2526 0 1970 145 3 0 chr1 3277219 3277509 -239386844 - AluSx SINE Alu -15 297 7 1101 123 0 0 chr1 3277518 3277672 -239386681 - AluSq SINE Alu -157 156 3 2175 100 0 0 chr1 3277706 3278017 -239386336 - AluSg SINE Alu 0 311 1 180 179 0 0 chr1 3278497 3278536 -239385817 + (CA)n Simple_repeat Simple_repeat 2 40 0 1804 132 28 24 chr1 3278684 3278972 -239385381 + AluJo SINE Alu 1 289 -23 933 168 19 47 chr1 3278975 3279189 -239385164 + Tigger1 DNA MER2_type 1 208 -2210 2171 110 3 0 chr1 3279533 3279834 -239384519 - AluSx SINE Alu -10 302 1 190 319 154 0 chr1 3280805 3280896 -239383457 - L2 LINE L2 -17 3255 3151 2118 89 32 0 chr1 3281359 3281640 -239382713 - AluSx SINE Alu -22 290 1 246 260 14 0 chr1 3282660 3282733 -239381620 + G-rich Low_complexity Low_complexity 2 75 0 180 0 0 0 chr1 3283716 3283736 -239380617 + (CCCCG)n Simple_repeat Simple_repeat 2 21 0 197 400 0 0 chr1 3284161 3284266 -239380087 - MIR SINE MIR -74 134 30 231 344 0 21 chr1 3284916 3285012 -239379341 - MIR SINE MIR -11 251 158 344 266 64 138 chr1 3285818 3285876 -239378477 + MIR SINE MIR 64 125 -137 2054 119 0 42 chr1 3285876 3286186 -239378167 + AluSq SINE Alu 1 297 -16 2474 74 3 0 chr1 3286188 3286498 -239377855 + AluY SINE Alu 1 311 0 344 266 64 138 chr1 3286498 3286639 -239377714 + MIR SINE MIR 126 251 -11 241 260 0 27 chr1 3288078 3288151 -239376202 + L2 LINE L2 2905 2975 -339 21 36 0 0 chr1 3288420 3288448 -239375905 + GC_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr1 3288464 3288490 -239375863 + (CGGGG)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr1 3288886 3288916 -239375437 + GC_rich Low_complexity Low_complexity 1 30 0 373 278 157 15 chr1 3289585 3289852 -239374501 - L2 LINE L2 -267 3046 2740 216 0 0 0 chr1 3292851 3292875 -239371478 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 1373 92 5 0 chr1 3294370 3294555 -239369798 + AluSp SINE Alu 125 310 -3 2152 97 6 67 chr1 3295083 3295467 -239368886 + AluSx SINE Alu 1 364 0 205 250 33 0 chr1 3295509 3295569 -239368784 - MIR SINE MIR -71 191 130 489 236 36 0 chr1 3295570 3295680 -239368673 - L2 LINE L2 -4 3268 3155 221 231 0 62 chr1 3295713 3295778 -239368575 + MIR SINE MIR 62 122 -86 2325 91 0 3 chr1 3296598 3296906 -239367447 + AluSg SINE Alu 2 308 -2 2112 126 0 3 chr1 3296919 3297213 -239367140 + AluSg SINE Alu 1 293 -17 1128 148 0 0 chr1 3297214 3297383 -239366970 + AluSg/x SINE Alu 134 302 -10 265 261 185 23 chr1 3297456 3297660 -239366693 + L2 LINE L2 2887 3118 -195 2090 87 21 10 chr1 3297671 3297959 -239366394 - AluSx SINE Alu -21 291 1 188 291 89 25 chr1 3298219 3298298 -239366055 + MIR SINE MIR 36 119 -89 181 332 138 37 chr1 3298499 3298767 -239365586 - L2 LINE L2 -145 3168 2874 183 309 140 51 chr1 3299575 3299753 -239364600 - MIR SINE MIR -18 244 51 623 320 104 0 chr1 3299954 3300176 -239364177 + MIR SINE MIR 17 261 -1 1597 173 0 7 chr1 3300232 3300546 -239363807 - AluJo SINE Alu 0 312 18 180 243 0 0 chr1 3300869 3300906 -239363447 - MIR SINE MIR -8 254 218 209 352 63 42 chr1 3302067 3302209 -239362144 - MIR SINE MIR -18 244 100 193 211 115 0 chr1 3302383 3302435 -239361918 + MIR SINE MIR 68 125 -137 2182 128 0 0 chr1 3302586 3302892 -239361461 + AluSx SINE Alu 1 306 -6 496 209 58 68 chr1 3302960 3303151 -239361202 + MER53 DNA DNA 1 189 0 200 298 58 87 chr1 3303157 3303365 -239360988 - L2 LINE L2 -95 3177 2976 2211 70 18 3 chr1 3303491 3303775 -239360578 + AluSg SINE Alu 3 290 -20 306 215 16 33 chr1 3304205 3304326 -239360027 + (CGGGG)n Simple_repeat Simple_repeat 2 120 0 22 35 0 0 chr1 3304569 3304598 -239359755 + GC_rich Low_complexity Low_complexity 1 29 0 206 253 32 0 chr1 3304870 3304934 -239359419 - MIR SINE MIR -63 145 103 267 285 277 13 chr1 3305630 3305865 -239358488 + L3 LINE CR1 1280 1576 -1 203 368 23 0 chr1 3305942 3306029 -239358324 - MIR SINE MIR -1 261 173 2237 87 0 17 chr1 3306045 3306344 -239358009 + AluSc SINE Alu 1 294 -15 2406 73 0 3 chr1 3306344 3306645 -239357708 + AluSc SINE Alu 1 300 -9 2035 106 34 10 chr1 3306653 3306945 -239357408 + AluSq SINE Alu 1 299 -14 347 262 78 30 chr1 3306980 3307119 -239357234 - MIR SINE MIR -34 174 31 262 214 274 8 chr1 3308062 3308179 -239356174 - MIR3 SINE MIR -16 192 45 183 80 0 0 chr1 3308852 3308877 -239355476 + (CA)n Simple_repeat Simple_repeat 1 25 0 264 221 39 0 chr1 3309509 3309586 -239354767 + C-rich Low_complexity Low_complexity 5 84 0 23 0 0 0 chr1 3311069 3311092 -239353261 + GC_rich Low_complexity Low_complexity 1 23 0 211 256 12 12 chr1 3312565 3312647 -239351706 + (CCCG)n Simple_repeat Simple_repeat 4 85 0 210 150 0 0 chr1 3312714 3312754 -239351599 + (CCG)n Simple_repeat Simple_repeat 1 40 0 208 200 46 0 chr1 3313079 3313144 -239351209 + MIR SINE MIR 55 122 -86 221 294 0 33 chr1 3314072 3314164 -239350189 + CT-rich Low_complexity Low_complexity 2 90 0 1694 83 0 13 chr1 3315950 3316180 -239348173 - AluSg/x SINE Alu -1 309 83 430 151 32 32 chr1 3316365 3316458 -239347895 - MER5A DNA MER1_type -83 106 14 217 183 24 122 chr1 3317428 3317510 -239346843 - MIR SINE MIR -73 135 62 198 234 169 13 chr1 3318376 3318453 -239345900 - MIR SINE MIR -170 92 4 465 297 65 19 chr1 3318809 3318964 -239345389 + MIR SINE MIR 11 172 -90 203 270 149 0 chr1 3320783 3320857 -239343496 + MIR SINE MIR 59 143 -65 243 266 16 0 chr1 3321218 3321282 -239343071 + (CA)n Simple_repeat Simple_repeat 2 66 0 359 237 93 10 chr1 3321532 3321629 -239342724 + MIR SINE MIR 41 145 -63 23 33 0 0 chr1 3321954 3321984 -239342369 + GC_rich Low_complexity Low_complexity 1 30 0 227 293 0 0 chr1 3322135 3322217 -239342136 + CT-rich Low_complexity Low_complexity 3 84 0 195 42 0 0 chr1 3322734 3322758 -239341595 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 1109 152 18 4 chr1 3322767 3323749 -239340604 + (TGGA)n Simple_repeat Simple_repeat 1 995 0 200 170 43 21 chr1 3323753 3323800 -239340553 + GA-rich Low_complexity Low_complexity 4 51 0 326 370 110 37 chr1 3324501 3324828 -239339525 + L2 LINE L2 2917 3267 -5 313 270 14 0 chr1 3325319 3325393 -239338960 - MIR3 SINE MIR -20 188 114 195 220 0 0 chr1 3325501 3325551 -239338802 + (CA)n Simple_repeat Simple_repeat 2 51 0 313 326 36 22 chr1 3325735 3325873 -239338480 - MIR SINE MIR -65 197 58 2122 82 0 7 chr1 3326686 3326967 -239337386 + AluSx SINE Alu 1 279 -33 261 0 0 0 chr1 3326967 3326996 -239337357 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 192 125 0 0 chr1 3327897 3327929 -239336424 + (CCG)n Simple_repeat Simple_repeat 3 34 0 2180 118 3 0 chr1 3329394 3329698 -239334655 + AluSx SINE Alu 1 305 -7 510 260 164 11 chr1 3330050 3330227 -239334126 + MIR SINE MIR 51 254 -8 236 235 94 0 chr1 3331094 3331179 -239333174 + MER113 DNA MER1_type? 10 102 -419 496 200 157 0 chr1 3331668 3331783 -239332570 + FLAM_A SINE Alu 1 133 -9 2129 72 11 18 chr1 3331785 3331865 -239332488 + AluSc SINE Alu 1 80 -229 2716 16 0 0 chr1 3331865 3332170 -239332183 + AluYa5 SINE Alu 1 305 -6 2129 72 11 18 chr1 3332170 3332367 -239331986 + AluSc SINE Alu 80 276 -33 288 0 0 0 chr1 3332367 3332399 -239331954 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 284 0 12 chr1 3332497 3332578 -239331775 + CT-rich Low_complexity Low_complexity 1 80 0 260 330 0 22 chr1 3334240 3334331 -239330022 + GA-rich Low_complexity Low_complexity 2 90 0 290 253 55 55 chr1 3335085 3335195 -239329158 + MIR SINE MIR 39 147 -63 2227 107 3 16 chr1 3335239 3335556 -239328797 + AluSp SINE Alu 1 313 0 255 304 0 39 chr1 3337974 3338076 -239326277 + GA-rich Low_complexity Low_complexity 4 101 0 204 252 48 19 chr1 3338117 3338220 -239326133 + (CAGAGA)n Simple_repeat Simple_repeat 1 106 0 248 269 39 62 chr1 3339897 3340027 -239324326 + L2 LINE L2 2649 2775 -539 390 318 60 7 chr1 3340380 3340531 -239323822 + MIR SINE MIR 34 192 -70 226 287 50 69 chr1 3340622 3340723 -239323630 + MIR SINE MIR 118 216 -46 2138 126 7 0 chr1 3341877 3342186 -239322167 + AluSx SINE Alu 2 312 0 237 200 33 33 chr1 3343230 3343290 -239321063 - MIR SINE MIR -164 98 39 207 0 0 0 chr1 3345469 3345492 -239318861 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 770 173 87 7 chr1 3345494 3345644 -239318709 - AluJb SINE Alu -30 282 121 280 264 27 73 chr1 3345644 3345754 -239318599 - MIR SINE MIR -115 147 43 2524 50 0 0 chr1 3346241 3346543 -239317810 - AluY SINE Alu -9 302 1 283 309 73 8 chr1 3346678 3346801 -239317552 + MIR SINE MIR 95 225 -37 234 301 0 72 chr1 3347207 3347400 -239316953 + GA-rich Low_complexity Low_complexity 1 179 0 * 269 236 0 28 chr1 3347355 3347427 -239316926 + (CAGAGA)n Simple_repeat Simple_repeat 5 74 0 989 103 44 12 chr1 3347502 3348588 -239315765 + (TGGA)n Simple_repeat Simple_repeat 1 1120 0 716 127 42 0 chr1 3348599 3348764 -239315589 + (TGGA)n Simple_repeat Simple_repeat 4 175 0 439 231 18 0 chr1 3348821 3348990 -239315363 + (TGGA)n Simple_repeat Simple_repeat 4 175 0 226 204 59 13 chr1 3349013 3349165 -239315188 + (TGGA)n Simple_repeat Simple_repeat 4 162 0 591 290 55 19 chr1 3349786 3350022 -239314331 - MIR SINE MIR -6 256 10 750 180 0 0 chr1 3350658 3350780 -239313573 + FLAM_A SINE Alu 5 126 -7 377 270 157 36 chr1 3350840 3351242 -239313111 - L2 LINE L2 -283 3030 2495 29 90 0 0 chr1 3352778 3352856 -239311497 + GC_rich Low_complexity Low_complexity 1 78 0 40 59 0 0 chr1 3352984 3353052 -239311301 + GC_rich Low_complexity Low_complexity 1 68 0 1962 81 23 55 chr1 3355197 3355507 -239308846 - AluSc SINE Alu -9 300 1 2224 78 7 20 chr1 3355784 3356090 -239308263 + AluSx SINE Alu 1 302 -10 2129 117 7 0 chr1 3360171 3360469 -239303884 + AluSx SINE Alu 7 306 -6 2147 123 0 0 chr1 3360472 3360782 -239303571 + AluY SINE Alu 1 310 -1 1495 164 95 4 chr1 3361197 3361471 -239302882 - AluSx SINE Alu -13 299 1 891 135 0 0 chr1 3361547 3361673 -239302680 + AluJo SINE Alu 1 126 -186 26 0 0 0 chr1 3361673 3361699 -239302654 + AT_rich Low_complexity Low_complexity 1 26 0 2272 51 20 7 chr1 3361932 3362224 -239302129 - AluSp SINE Alu -16 297 2 925 165 24 0 chr1 3362554 3362718 -239301635 + AluJo SINE Alu 135 302 -10 2219 98 0 3 chr1 3362777 3363082 -239301271 + AluSq SINE Alu 1 304 -9 2049 87 7 0 chr1 3363515 3363792 -239300561 - AluSp SINE Alu -8 305 27 985 118 0 40 chr1 3364080 3364217 -239300136 + AluSq/x SINE Alu 1 142 -170 2318 78 3 10 chr1 3364217 3364525 -239299828 + AluSg SINE Alu 1 306 -4 2470 50 0 25 chr1 3364525 3364842 -239299511 + AluY SINE Alu 1 309 -2 985 118 0 40 chr1 3364842 3364855 -239299498 + AluSq/x SINE Alu 140 146 -166 2147 120 0 3 chr1 3364855 3365155 -239299198 + AluSx SINE Alu 1 299 -13 1729 176 14 3 chr1 3365190 3365486 -239298867 - AluJo SINE Alu -13 299 1 2053 121 0 3 chr1 3365555 3365852 -239298501 + AluSx SINE Alu 1 296 -16 1206 202 39 62 chr1 3366285 3366463 -239297890 - AluJb SINE Alu -2 300 130 2288 74 7 0 chr1 3366463 3366762 -239297591 - AluSp SINE Alu -12 301 1 1206 202 39 62 chr1 3366762 3366890 -239297463 - AluJb SINE Alu -172 130 1 1952 123 7 0 chr1 3367081 3367366 -239296987 + AluJb SINE Alu 19 305 -7 181 271 125 88 chr1 3367524 3367716 -239296637 + MIR3 SINE MIR 9 207 -1 1671 183 21 3 chr1 3367744 3368033 -239296320 + AluJo SINE Alu 1 294 -18 1995 91 4 0 chr1 3368033 3368298 -239296055 + AluY SINE Alu 38 303 -8 2333 80 0 7 chr1 3368303 3368604 -239295749 + AluY SINE Alu 1 299 -12 2018 147 3 6 chr1 3368607 3368919 -239295434 + AluSx SINE Alu 1 311 -1 2205 119 0 0 chr1 3368920 3369232 -239295121 + AluSp SINE Alu 1 312 -1 2141 107 0 7 chr1 3370169 3370469 -239293884 - AluSg SINE Alu -12 298 1 227 282 94 0 chr1 3373167 3373252 -239291101 + L2 LINE L2 491 583 -2731 205 300 0 0 chr1 3373255 3373325 -239291028 + L2 LINE L2 853 922 -2392 431 262 29 0 chr1 3373365 3373468 -239290885 - MER5A DNA MER1_type -80 109 4 243 291 55 27 chr1 3373535 3373645 -239290708 + L2 LINE L2 1008 1120 -2194 743 184 209 8 chr1 3373705 3374213 -239290140 + LTR50 LTR ERVL 29 793 -2 227 331 117 7 chr1 3374213 3374280 -239290073 + L2 LINE L2 1230 1288 -2026 1046 182 0 0 chr1 3374280 3374445 -239289908 - FRAM SINE Alu -1 165 1 227 331 117 7 chr1 3374445 3374531 -239289822 + L2 LINE L2 1288 1400 -1914 1832 148 9 28 chr1 3374532 3374717 -239289636 - AluJo SINE Alu 0 312 134 180 0 0 0 chr1 3374717 3374737 -239289616 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1832 148 9 28 chr1 3374737 3374869 -239289484 - AluJo SINE Alu -178 134 1 200 159 23 45 chr1 3375066 3375154 -239289199 + C-rich Low_complexity Low_complexity 1 86 0 225 283 100 29 chr1 3375154 3375304 -239289049 + L2 LINE L2 2817 2985 -287 1871 160 3 7 chr1 3375304 3375610 -239288743 - AluJo SINE Alu -7 305 1 225 283 100 29 chr1 3375610 3375666 -239288687 + L2 LINE L2 2985 3036 -236 1577 103 117 72 chr1 3375734 3375888 -239288465 - AluSx SINE Alu -9 303 157 2291 94 0 7 chr1 3375888 3376197 -239288156 - AluSg SINE Alu -3 307 1 1577 103 117 72 chr1 3376197 3376332 -239288021 - AluSx SINE Alu -155 157 1 183 275 0 0 chr1 3376432 3376472 -239287881 + L2 LINE L2 3271 3310 -3 205 282 0 24 chr1 3376586 3376671 -239287682 + MIR SINE MIR 150 232 -30 2451 62 3 0 chr1 3376713 3377017 -239287336 + AluSp SINE Alu 1 305 -8 2347 57 10 3 chr1 3377116 3377412 -239286941 + AluY SINE Alu 1 298 -13 698 152 0 9 chr1 3377518 3377630 -239286723 + FLAM_C SINE Alu 1 111 -32 186 71 0 0 chr1 3377668 3377696 -239286657 + (A)n Simple_repeat Simple_repeat 1 28 0 1570 130 123 4 chr1 3377696 3377965 -239286388 + AluJb SINE Alu 1 301 -11 283 253 72 0 chr1 3378381 3378464 -239285889 - MIR SINE MIR -84 124 36 1987 66 80 0 chr1 3378616 3378890 -239285463 - AluSx SINE Alu -16 296 1 226 297 10 40 chr1 3380043 3380144 -239284209 - MIR SINE MIR -65 143 46 203 247 136 25 chr1 3380801 3380882 -239283471 - MIR SINE MIR -62 146 57 2037 89 43 0 chr1 3381465 3381746 -239282607 - AluSx SINE Alu -19 293 1 216 180 0 40 chr1 3381813 3381863 -239282490 + MIR SINE MIR 101 148 -114 24 0 0 0 chr1 3382499 3382523 -239281830 + GC_rich Low_complexity Low_complexity 1 24 0 269 262 80 91 chr1 3382721 3382908 -239281445 - L2 LINE L2 -73 3199 3015 196 260 62 73 chr1 3384795 3384891 -239279462 - MER5B DNA MER1_type -62 116 22 1450 107 0 0 chr1 3386378 3386575 -239277778 + AluSx SINE Alu 1 197 -115 305 98 0 0 chr1 3386577 3386628 -239277725 + AluSx SINE Alu 252 302 0 1429 228 89 48 chr1 3387125 3387538 -239276815 - HAL1 LINE L1 -787 1720 1326 1647 96 0 0 chr1 3387538 3387758 -239276595 - AluSg/x SINE Alu -8 304 85 2135 99 26 7 chr1 3387763 3388066 -239276287 - AluSc SINE Alu 0 309 1 1429 228 89 48 chr1 3388066 3388151 -239276202 - HAL1 LINE L1 -1184 1323 1195 2254 103 6 0 chr1 3388156 3388467 -239275886 - AluSp SINE Alu 0 313 1 896 134 0 8 chr1 3388472 3388606 -239275747 - FLAM_C SINE Alu 0 133 1 365 216 126 32 chr1 3388613 3388803 -239275550 - HAL1 LINE L1 -1398 1109 902 1055 96 13 13 chr1 3388807 3388963 -239275390 - AluSg/x SINE Alu -17 293 138 471 237 7 65 chr1 3388968 3389107 -239275246 - HAL1 LINE L1 -1605 902 772 1078 294 123 24 chr1 3389558 3389700 -239274653 + L2 LINE L2 1828 1955 -1359 2268 62 0 33 chr1 3389700 3390007 -239274346 - AluSc SINE Alu -12 297 1 1812 164 17 0 chr1 3390007 3390304 -239274049 - AluJb SINE Alu -9 303 1 1078 294 123 24 chr1 3390304 3390860 -239273493 + L2 LINE L2 1954 2596 -718 206 297 54 0 chr1 3390988 3391062 -239273291 + L2 LINE L2 2862 2939 -333 2341 76 3 3 chr1 3392629 3392933 -239271420 - AluSq SINE Alu -9 304 1 2192 93 0 10 chr1 3392937 3393237 -239271116 - AluSp SINE Alu -16 297 1 2201 72 7 30 chr1 3395278 3395583 -239268770 + AluSx SINE Alu 1 298 -14 2214 104 0 3 chr1 3396238 3396546 -239267807 - AluSg SINE Alu -3 307 1 429 340 63 0 chr1 3396776 3396935 -239267418 - MIR SINE MIR -44 218 50 1424 158 22 0 chr1 3399002 3399224 -239265129 - AluJb SINE Alu -15 297 71 2033 118 7 3 chr1 3399252 3399548 -239264805 + AluSx SINE Alu 1 297 -15 455 288 107 42 chr1 3399764 3399884 -239264469 - MIR SINE MIR -15 247 136 781 200 0 0 chr1 3399884 3400014 -239264339 - FLAM_A SINE Alu -3 130 1 455 288 107 42 chr1 3400014 3400108 -239264245 - MIR SINE MIR -126 136 19 229 302 203 0 chr1 3400156 3400348 -239264005 - MER112 DNA MER1_type -22 238 8 2471 66 0 3 chr1 3400713 3401018 -239263335 + AluY SINE Alu 1 304 -7 1227 206 14 0 chr1 3401025 3401243 -239263110 + AluJo SINE Alu 1 221 -91 998 162 134 69 chr1 3401291 3401478 -239262875 - AluJo SINE Alu -13 299 91 2405 82 0 0 chr1 3401478 3401781 -239262572 - AluY SINE Alu -8 303 1 998 162 134 69 chr1 3401781 3401840 -239262513 - AluJo SINE Alu -221 91 37 2132 112 0 19 chr1 3401884 3402198 -239262155 + AluSx SINE Alu 1 308 -4 1605 141 4 38 chr1 3402203 3402336 -239262017 + AluSx SINE Alu 9 130 -182 2279 99 3 6 chr1 3402336 3402649 -239261704 + AluSp SINE Alu 1 312 -1 1605 141 4 38 chr1 3402649 3402777 -239261576 + AluSx SINE Alu 130 261 -51 687 172 41 41 chr1 3402777 3402922 -239261431 + AluJb SINE Alu 168 312 0 369 0 0 0 chr1 3402923 3402964 -239261389 + (CA)n Simple_repeat Simple_repeat 2 42 0 918 162 0 0 chr1 3403003 3403151 -239261202 - AluSg/x SINE Alu -8 304 157 1613 125 3 80 chr1 3403161 3403258 -239261095 + AluJb SINE Alu 18 121 -191 1916 149 0 0 chr1 3403258 3403534 -239260819 - AluSx SINE Alu -16 296 21 1613 125 3 80 chr1 3403534 3403747 -239260606 + AluJb SINE Alu 121 304 -8 2227 96 0 26 chr1 3403747 3404059 -239260294 + AluY SINE Alu 1 304 -7 1292 196 117 7 chr1 3404059 3404340 -239260013 + AluJo SINE Alu 1 312 0 802 171 0 14 chr1 3404569 3404709 -239259644 + FLAM_C SINE Alu 6 143 0 331 216 41 0 chr1 3404907 3405004 -239259349 + L1MB7 LINE L1 6084 6184 0 2141 116 3 0 chr1 3405694 3405987 -239258366 - AluSq SINE Alu -19 294 1 2320 65 7 3 chr1 3405999 3406293 -239258060 - AluSg SINE Alu -15 295 1 1956 90 0 97 chr1 3406973 3407313 -239257040 - AluSg SINE Alu 0 310 2 540 277 106 0 chr1 3408239 3408406 -239255947 + MIR SINE MIR 35 217 -45 41 0 0 0 chr1 3408810 3408851 -239255502 + GC_rich Low_complexity Low_complexity 1 41 0 21 100 0 0 chr1 3409018 3409088 -239255265 + GC_rich Low_complexity Low_complexity 1 70 0 23 33 0 0 chr1 3409234 3409264 -239255089 + GC_rich Low_complexity Low_complexity 1 30 0 2221 85 0 3 chr1 3409407 3409701 -239254652 + AluSx SINE Alu 1 293 -19 2315 48 17 3 chr1 3409924 3410216 -239254137 - AluY SINE Alu -15 296 1 737 156 14 71 chr1 3410366 3410507 -239253846 - FLAM_C SINE Alu 0 133 1 273 173 55 100 chr1 3410507 3410595 -239253758 + L1ME4a LINE L1 6008 6092 -29 2275 78 3 7 chr1 3410595 3410890 -239253463 - AluSq SINE Alu -19 294 1 273 173 55 100 chr1 3410890 3410911 -239253442 + L1ME4a LINE L1 6092 6112 -9 254 239 115 53 chr1 3411385 3411498 -239252855 + MIR SINE MIR 28 147 -115 1147 142 0 0 chr1 3411549 3411725 -239252628 - FRAM SINE Alu -1 175 1 2393 90 0 0 chr1 3412862 3413172 -239251181 - AluSg SINE Alu 0 310 1 258 32 0 0 chr1 3413999 3414030 -239250323 + (T)n Simple_repeat Simple_repeat 1 31 0 28 29 0 0 chr1 3415513 3415548 -239248805 + GC_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr1 3415595 3415625 -239248728 + GC_rich Low_complexity Low_complexity 1 30 0 297 154 0 0 chr1 3417855 3417907 -239246446 + FLAM_A SINE Alu 56 107 -26 527 120 0 43 chr1 3418104 3418221 -239246132 + (TCCCC)n Simple_repeat Simple_repeat 2 113 0 21 0 0 0 chr1 3418470 3418491 -239245862 + GC_rich Low_complexity Low_complexity 1 21 0 204 266 65 0 chr1 3421857 3421930 -239242423 - MIR3 SINE MIR -23 185 107 27 29 0 0 chr1 3422561 3422595 -239241758 + GC_rich Low_complexity Low_complexity 1 34 0 213 259 19 44 chr1 3422719 3422877 -239241476 + G-rich Low_complexity Low_complexity 1 154 0 360 244 136 29 chr1 3423876 3424083 -239240270 + MIR SINE MIR 3 241 -21 889 176 13 0 chr1 3424947 3425100 -239239253 - FRAM SINE Alu -22 154 1 225 239 30 60 chr1 3425103 3425170 -239239183 - MIR SINE MIR -115 147 83 395 336 14 2 chr1 3425296 3425435 -239238918 + MIR SINE MIR 31 172 -63 2101 113 3 25 chr1 3426249 3426569 -239237784 + AluSq SINE Alu 1 313 0 411 273 81 9 chr1 3426647 3426795 -239237558 + MIR SINE MIR 46 202 -37 238 111 89 0 chr1 3428243 3428288 -239236065 + MLT1A1 LTR MaLR 2 50 -378 2197 69 4 0 chr1 3428341 3428615 -239235738 - AluY SINE Alu -15 296 22 1689 155 3 46 chr1 3428624 3428782 -239235571 - AluJo SINE Alu -22 290 150 2244 107 3 3 chr1 3428782 3429090 -239235263 - AluSg SINE Alu -2 308 1 1689 155 3 46 chr1 3429090 3429234 -239235119 - AluJo SINE Alu -162 150 1 347 274 11 11 chr1 3429364 3429459 -239234894 + MLT1A1 LTR MaLR 185 279 -86 2010 127 10 16 chr1 3429495 3429809 -239234544 - AluSx SINE Alu 0 312 1 820 174 0 8 chr1 3429809 3429941 -239234412 - FLAM_A SINE Alu -2 131 1 229 250 44 0 chr1 3429946 3430014 -239234339 + MLT1A1 LTR MaLR 386 456 -1 2163 77 49 3 chr1 3431282 3431568 -239232785 - AluSq SINE Alu -14 299 1 1835 163 0 3 chr1 3432118 3432412 -239231941 + AluJb SINE Alu 1 293 -19 277 341 78 8 chr1 3432488 3432617 -239231736 - MIR SINE MIR -113 149 12 40 123 0 0 chr1 3434025 3434317 -239230036 + GC_rich Low_complexity Low_complexity 1 292 0 237 146 0 0 chr1 3434329 3434377 -239229976 + (TCCG)n Simple_repeat Simple_repeat 4 51 0 181 245 20 0 chr1 3434597 3434646 -239229707 - L2 LINE L2 -208 3064 3015 234 217 33 0 chr1 3434930 3434990 -239229363 + CT-rich Low_complexity Low_complexity 1 62 0 223 185 93 0 chr1 3436001 3436055 -239228298 - MIR SINE MIR -164 98 40 298 219 0 14 chr1 3438683 3438756 -239225597 - MER94 DNA DNA -19 115 44 410 239 246 0 chr1 3439557 3439699 -239224654 - MER5A DNA MER1_type 0 189 13 249 33 0 0 chr1 3440601 3440631 -239223722 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 190 298 123 0 chr1 3441019 3441076 -239223277 + MIR SINE MIR 126 189 -73 934 241 92 3 chr1 3441106 3441401 -239222952 + L1MB8 LINE L1 5858 6178 0 514 234 27 24 chr1 3442210 3442373 -239221980 - MIR SINE MIR -67 141 25 232 207 17 35 chr1 3445331 3445375 -239218978 + L2 LINE L2 3215 3259 -13 237 65 0 0 chr1 3445375 3445406 -239218947 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 232 207 17 35 chr1 3445406 3445419 -239218934 + L2 LINE L2 3259 3271 -1 2157 89 48 0 chr1 3448590 3448883 -239215470 + AluSg SINE Alu 1 307 -3 293 305 109 56 chr1 3450648 3451005 -239213348 + L2 LINE L2 2842 3217 -96 469 257 71 0 chr1 3451034 3451174 -239213179 - MIR SINE MIR -78 184 35 192 286 198 0 chr1 3451269 3451395 -239212958 - L2 LINE L2 -251 3062 2912 181 308 33 0 chr1 3452729 3452820 -239211533 + L2 LINE L2 2963 3056 -216 207 329 130 49 chr1 3454634 3454880 -239209473 - L3 LINE CR1 -11 1566 1301 1700 171 7 14 chr1 3456310 3456603 -239207750 - AluSx SINE Alu -19 293 3 1132 153 0 0 chr1 3456981 3457151 -239207202 + AluJb SINE Alu 130 299 -13 2335 94 3 0 chr1 3457434 3457742 -239206611 + AluSq SINE Alu 1 309 -4 367 243 126 10 chr1 3459658 3459761 -239204592 + MIR SINE MIR 25 139 -123 1138 58 0 0 chr1 3460088 3460225 -239204128 - AluY SINE Alu -174 137 1 422 367 58 22 chr1 3460426 3460652 -239203701 + MIR SINE MIR 1 234 -28 2420 77 0 0 chr1 3462227 3462539 -239201814 - AluSx SINE Alu 0 312 1 1516 136 107 18 chr1 3462541 3462813 -239201540 - AluJb SINE Alu -16 296 1 663 191 8 46 chr1 3462816 3462967 -239201386 - FLAM_A SINE Alu 0 133 2 1284 239 156 5 chr1 3463033 3463464 -239200889 + MLT1D LTR MaLR 7 502 -3 875 261 52 41 chr1 3464307 3464671 -239199682 + MLT1C LTR MaLR 59 426 -41 1112 135 5 16 chr1 3465806 3465999 -239198354 - AluSg/x SINE Alu 0 310 120 2499 65 0 0 chr1 3466019 3466328 -239198025 - AluY SINE Alu -2 309 1 972 218 0 35 chr1 3466651 3466853 -239197500 + AluJo SINE Alu 101 295 -17 2416 216 68 27 chr1 3468411 3469046 -239195307 + L1MB8 LINE L1 5452 6119 -59 1587 171 42 3 chr1 3469046 3469332 -239195021 - AluJo SINE Alu -15 297 1 2416 216 68 27 chr1 3469332 3469390 -239194963 + L1MB8 LINE L1 6119 6173 -5 2286 93 0 3 chr1 3469560 3469862 -239194491 - AluSg SINE Alu -9 301 1 832 153 0 36 chr1 3469878 3470015 -239194338 - FLAM_C SINE Alu 0 133 2 343 238 0 0 chr1 3470051 3470131 -239194222 + MER116 DNA Mariner 1 80 0 2073 123 3 0 chr1 3470185 3470477 -239193876 - AluSx SINE Alu -19 293 1 271 319 93 24 chr1 3470707 3471038 -239193315 + L1MC5 LINE L1 7516 7901 -60 2151 121 0 0 chr1 3471275 3471572 -239192781 - AluSx SINE Alu -13 299 3 241 376 31 25 chr1 3472218 3472380 -239191973 + MIR SINE MIR 41 203 -59 180 0 0 0 chr1 3472780 3472800 -239191553 + (GA)n Simple_repeat Simple_repeat 2 21 0 257 106 0 21 chr1 3472805 3472852 -239191501 + (TG)n Simple_repeat Simple_repeat 2 47 0 252 319 96 24 chr1 3474004 3474170 -239190183 - MIR SINE MIR -84 178 1 192 250 171 0 chr1 3474677 3474753 -239189600 + L2 LINE L2 3170 3258 -14 204 67 0 0 chr1 3474754 3474784 -239189569 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 283 342 114 63 chr1 3475068 3475592 -239188761 + L3 LINE CR1 913 1463 -114 240 111 0 0 chr1 3477457 3477493 -239186860 + (A)n Simple_repeat Simple_repeat 1 36 0 9376 15 3 251 chr1 3477533 3479376 -239184977 - SVA Other Other 0 1386 1 185 256 116 35 chr1 3480275 3480361 -239183992 + L2 LINE L2 3172 3264 -8 319 219 134 0 chr1 3480492 3480574 -239183779 - L2 LINE L2 -1 3271 3179 462 298 77 80 chr1 3482566 3482918 -239181435 - L1M4 LINE L1 -3021 3125 2775 1468 226 72 88 chr1 3482955 3483320 -239181033 - L1M4 LINE L1 -2406 3740 3371 1775 170 83 9 chr1 3483320 3483644 -239180709 + MER7A DNA MER2_type 1 346 0 1468 226 72 88 chr1 3483644 3484351 -239180002 - L1M4 LINE L1 -2775 3371 2486 1380 181 27 4 chr1 3484355 3484830 -239179523 + MER68 LTR ERV1 3 562 0 652 271 46 8 chr1 3484831 3485071 -239179282 - L1M4 LINE L1 -3688 2458 2210 609 265 62 65 chr1 3485091 3485362 -239178991 + L1MC4a LINE L1 5613 5884 -1924 1969 125 7 7 chr1 3485362 3485659 -239178694 + AluSx SINE Alu 2 298 -14 609 265 62 65 chr1 3485659 3485742 -239178611 + L1MC4a LINE L1 5884 5966 -1842 338 256 35 0 chr1 3486056 3486142 -239178211 + MIR SINE MIR 128 216 -46 199 242 0 76 chr1 3486166 3486232 -239178121 + L2 LINE L2 3206 3266 -6 1480 182 163 0 chr1 3486879 3487192 -239177161 - MER47A DNA MER2_type 0 366 3 255 312 91 0 chr1 3487935 3488012 -239176341 + MER91A DNA MER1_type 2 85 -111 422 311 99 0 chr1 3488454 3488615 -239175738 + Charlie1a DNA MER1_type 1 177 -1278 4315 204 89 3 chr1 3488658 3489771 -239174582 + Charlie1a DNA MER1_type 241 1449 -6 435 207 9 17 chr1 3490325 3490441 -239173912 + MLT1D LTR MaLR 391 505 0 183 229 0 21 chr1 3490481 3490529 -239173824 + L2 LINE L2 3016 3062 -210 430 285 115 6 chr1 3491579 3491744 -239172609 - MIR SINE MIR -3 259 77 208 341 159 0 chr1 3492303 3492435 -239171918 - L2 LINE L2 0 3313 3161 406 213 131 0 chr1 3492522 3492644 -239171709 + Charlie1 DNA MER1_type 2337 2474 -287 285 254 14 51 chr1 3494005 3494195 -239170158 + CT-rich Low_complexity Low_complexity 1 183 0 198 333 36 63 chr1 3496398 3496509 -239167844 - MIR3 SINE MIR -86 122 15 206 283 17 0 chr1 3496881 3496941 -239167412 - MIR SINE MIR -129 133 73 187 335 58 48 chr1 3499137 3499343 -239165010 - L2 LINE L2 -235 3037 2830 247 300 80 0 chr1 3499906 3500006 -239164347 - MIR SINE MIR -113 149 42 192 77 0 0 chr1 3501758 3501784 -239162569 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 377 66 16 0 chr1 3502405 3502466 -239161887 + (CA)n Simple_repeat Simple_repeat 1 62 0 248 278 0 0 chr1 3502939 3502993 -239161360 - MIR3 SINE MIR -38 170 117 218 303 115 8 chr1 3503056 3503178 -239161175 + L2 LINE L2 3078 3212 -60 191 318 0 30 chr1 3504118 3504184 -239160169 - MIR SINE MIR -108 100 37 350 359 139 40 chr1 3504629 3504930 -239159423 - L1MC/D LINE L1 -2029 5779 5449 799 197 0 0 chr1 3505336 3505468 -239158885 - FLAM_A SINE Alu -1 132 1 1256 214 101 34 chr1 3505511 3505918 -239158435 - MLT1C LTR MaLR -30 437 4 258 250 29 57 chr1 3506039 3506179 -239158174 + G-rich Low_complexity Low_complexity 3 138 0 355 231 33 55 chr1 3506197 3506379 -239157974 + G-rich Low_complexity Low_complexity 3 180 0 329 246 39 50 chr1 3506397 3506576 -239157777 + G-rich Low_complexity Low_complexity 3 179 0 218 206 43 54 chr1 3506999 3507091 -239157262 + C-rich Low_complexity Low_complexity 3 93 0 372 218 58 40 chr1 3507115 3507289 -239157064 + C-rich Low_complexity Low_complexity 3 179 0 386 213 58 40 chr1 3507352 3507526 -239156827 + C-rich Low_complexity Low_complexity 3 179 0 253 254 36 24 chr1 3507458 3507623 -239156730 + (CACTC)n Simple_repeat Simple_repeat 5 171 0 * 350 207 55 43 chr1 3507584 3507748 -239156605 + C-rich Low_complexity Low_complexity 3 168 0 279 168 52 75 chr1 3507666 3507867 -239156486 + (CACCT)n Simple_repeat Simple_repeat 1 196 0 * 2170 87 10 17 chr1 3509447 3509746 -239154607 + AluSx SINE Alu 1 297 -15 200 289 0 0 chr1 3510493 3510538 -239153815 + (TG)n Simple_repeat Simple_repeat 1 45 0 468 289 31 5 chr1 3510907 3510967 -239153386 + MER113 DNA MER1_type? 3 60 -461 2082 135 0 19 chr1 3510967 3511285 -239153068 - AluSx SINE Alu 0 312 1 468 289 31 5 chr1 3511285 3511418 -239152935 + MER113 DNA MER1_type? 60 201 -320 727 194 0 8 chr1 3511424 3511553 -239152800 + FLAM_A SINE Alu 3 130 -3 242 211 0 11 chr1 3513112 3513202 -239151151 + (TGG)n Simple_repeat Simple_repeat 1 89 0 329 225 0 22 chr1 3513217 3513399 -239150954 + (TGG)n Simple_repeat Simple_repeat 2 179 0 397 228 0 11 chr1 3513417 3513597 -239150756 + (TGG)n Simple_repeat Simple_repeat 2 179 0 418 266 3 6 chr1 3513627 3513941 -239150412 + (TGG)n Simple_repeat Simple_repeat 1 313 0 390 359 122 15 chr1 3514264 3514607 -239149746 - L2 LINE L2 -1 3271 2892 272 332 132 18 chr1 3514613 3514947 -239149406 + L2 LINE L2 2305 2676 -638 455 258 27 59 chr1 3515033 3515219 -239149134 + MIR SINE MIR 34 213 -49 2227 113 7 0 chr1 3516128 3516438 -239147915 - AluSx SINE Alu 0 312 1 1123 181 67 0 chr1 3516460 3516670 -239147683 + MER58A DNA MER1_type 1 224 0 213 39 0 0 chr1 3516791 3516817 -239147536 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1945 112 18 7 chr1 3516825 3517110 -239147243 - AluJb SINE Alu -24 288 1 1338 179 64 32 chr1 3518370 3518515 -239145838 - AluJo SINE Alu -23 289 150 297 0 0 0 chr1 3518515 3518548 -239145805 + (TG)n Simple_repeat Simple_repeat 2 34 0 1338 179 64 32 chr1 3518548 3518630 -239145723 - AluJo SINE Alu -162 150 49 2075 85 18 0 chr1 3518630 3518912 -239145441 + AluSx SINE Alu 11 297 -15 1338 179 64 32 chr1 3518912 3518963 -239145390 - AluJo SINE Alu -263 49 1 1374 175 13 89 chr1 3519031 3519345 -239145008 - AluJo SINE Alu -22 290 1 539 223 16 0 chr1 3519346 3519467 -239144886 - MER58B DNA MER1_type -8 333 211 520 113 94 0 chr1 3519471 3519577 -239144776 + MLT1A2 LTR MaLR 1 116 -258 983 126 0 31 chr1 3519577 3519736 -239144617 - AluJb SINE Alu -37 275 122 720 249 64 40 chr1 3519737 3519986 -239144367 + MLT1A2 LTR MaLR 120 374 0 711 194 60 45 chr1 3519993 3520118 -239144235 - MER58B DNA MER1_type -2216 204 73 1793 190 0 0 chr1 3520118 3520429 -239143924 + AluJo SINE Alu 1 311 -1 711 194 60 45 chr1 3520429 3520504 -239143849 - MER58B DNA MER1_type -2347 73 1 269 314 98 36 chr1 3520506 3520700 -239143653 + L3 LINE CR1 1012 1217 -360 415 344 54 42 chr1 3520874 3521133 -239143220 + L3 LINE CR1 1164 1425 -152 2109 98 25 0 chr1 3521765 3522051 -239142302 - AluSx SINE Alu -2 310 18 1764 149 3 17 chr1 3522096 3522384 -239141969 - AluJb SINE Alu -6 306 23 450 134 49 0 chr1 3522521 3522603 -239141750 - L1MB2 LINE L1 0 6171 6086 4385 173 20 7 chr1 3523627 3523983 -239140370 - L1MB3 LINE L1 -55 6128 5778 2210 111 10 0 chr1 3523983 3524290 -239140063 - AluSx SINE Alu -2 310 1 4385 173 20 7 chr1 3524290 3524871 -239139482 - L1MB3 LINE L1 -405 5778 5179 1700 159 9 38 chr1 3524871 3525048 -239139305 - AluJo SINE Alu -1 311 145 2315 86 0 7 chr1 3525048 3525350 -239139003 - AluSq SINE Alu -13 300 1 1700 159 9 38 chr1 3525350 3525492 -239138861 - AluJo SINE Alu -167 145 1 437 286 32 16 chr1 3525925 3526051 -239138302 + MIR3 SINE MIR 14 141 -67 244 354 21 0 chr1 3526834 3526930 -239137423 + MIR SINE MIR 109 206 -56 495 0 0 0 chr1 3528328 3528383 -239135970 + (TG)n Simple_repeat Simple_repeat 1 55 0 293 344 33 8 chr1 3529656 3529778 -239134575 - L2 LINE L2 -1 3312 3188 1881 96 4 15 chr1 3530142 3530412 -239133941 + AluSc SINE Alu 35 301 -8 404 190 41 22 chr1 3530769 3530881 -239133472 - MIR SINE MIR -58 150 46 236 196 0 0 chr1 3531478 3531524 -239132829 - MLT1I LTR MaLR -269 140 95 266 180 16 0 chr1 3531557 3531618 -239132735 + (TG)n Simple_repeat Simple_repeat 2 63 0 324 278 14 0 chr1 3531619 3531691 -239132662 + L1MCa LINE L1 1995 2067 -4359 536 188 8 0 chr1 3531692 3531820 -239132533 + (TG)n Simple_repeat Simple_repeat 2 130 0 301 260 0 39 chr1 3531824 3531901 -239132452 + L1MCa LINE L1 1995 2068 -4358 570 208 0 0 chr1 3531904 3532053 -239132300 + (TG)n Simple_repeat Simple_repeat 1 149 0 262 238 0 0 chr1 3532053 3532116 -239132237 - MLT1H LTR MaLR -458 91 29 249 167 33 50 chr1 3532522 3532582 -239131771 - MIR3 SINE MIR -41 167 109 1767 180 0 7 chr1 3532713 3533018 -239131335 + AluJb SINE Alu 1 303 -9 2160 112 13 0 chr1 3533407 3533780 -239130573 + AluSc SINE Alu 1 377 0 697 311 126 17 chr1 3533787 3534304 -239130049 + L1MC4 LINE L1 7342 7914 -128 661 226 10 0 chr1 3534320 3534624 -239129729 + (TG)n Simple_repeat Simple_repeat 1 307 0 309 236 49 73 chr1 3534651 3534774 -239129579 + L1MC4 LINE L1 7919 8038 -4 180 329 7 79 chr1 3534855 3534995 -239129358 + MIR SINE MIR 10 139 -123 1803 282 169 35 chr1 3535917 3537329 -239127024 - L2 LINE L2 0 3313 1616 2261 107 0 0 chr1 3537329 3537629 -239126724 + AluSx SINE Alu 1 300 -12 1803 282 169 35 chr1 3537629 3537962 -239126391 - L2 LINE L2 -1697 1616 1329 945 213 20 0 chr1 3537972 3538169 -239126184 - MER58A DNA MER1_type 0 224 24 521 236 9 9 chr1 3538202 3538312 -239126041 + MER5A DNA MER1_type 1 110 -79 346 140 0 0 chr1 3538912 3538969 -239125384 - AluS SINE Alu -246 57 1 2361 69 0 10 chr1 3538979 3539285 -239125068 - AluY SINE Alu -8 303 1 1669 140 0 76 chr1 3539388 3539703 -239124650 - AluJo SINE Alu -1 311 21 287 309 12 0 chr1 3540055 3540139 -239124214 - L2 LINE L2 -31 3282 3198 1177 269 147 14 chr1 3540622 3541139 -239123214 - MLT1E LTR MaLR -2 591 6 232 102 41 0 chr1 3541443 3541492 -239122861 + (TCTG)n Simple_repeat Simple_repeat 1 51 0 183 333 14 0 chr1 3543588 3543657 -239120696 + MIR SINE MIR 81 150 -58 846 264 60 35 chr1 3544936 3545350 -239119003 - MLT1H LTR MaLR -16 579 29 253 305 63 52 chr1 3545441 3545615 -239118738 - L2 LINE L2 -182 3090 2915 269 265 43 26 chr1 3548775 3548892 -239115461 - L2 LINE L2 -9 3304 3186 225 319 129 0 chr1 3549527 3549643 -239114710 - MIR SINE MIR -118 144 14 292 326 49 62 chr1 3550350 3550574 -239113779 - L2 LINE L2 -9 3304 3084 195 291 36 0 chr1 3550858 3550913 -239113440 - L2 LINE L2 -5 3267 3211 363 326 42 5 chr1 3551614 3551807 -239112546 - L1MC4a LINE L1 -1884 5924 5725 1932 137 6 19 chr1 3552930 3553245 -239111108 + AluSx SINE Alu 1 311 -1 1846 158 0 13 chr1 3553248 3553551 -239110802 + AluJo SINE Alu 1 299 -13 806 101 40 20 chr1 3553877 3554025 -239110328 + MER53 DNA DNA 37 187 -2 404 318 9 0 chr1 3554367 3554474 -239109879 - L2 LINE L2 -1 3312 3205 571 201 35 46 chr1 3554848 3554908 -239109445 + MLT1C LTR MaLR 6 65 -402 1491 169 143 0 chr1 3554908 3555181 -239109172 + AluJo SINE Alu 1 312 0 571 201 35 46 chr1 3555181 3555294 -239109059 + MLT1C LTR MaLR 65 177 -290 2105 94 31 44 chr1 3555356 3555456 -239108897 - MER51A LTR ERV1 0 634 534 1706 110 0 0 chr1 3555456 3555692 -239108661 + AluSq SINE Alu 1 236 -77 2105 94 31 44 chr1 3555692 3556141 -239108212 - MER51A LTR ERV1 -100 534 1 407 230 75 12 chr1 3556141 3556316 -239108037 + MLT1B LTR MaLR 273 390 0 2097 134 0 0 chr1 3556462 3556760 -239107593 - AluSx SINE Alu -10 302 5 2388 69 0 0 chr1 3557162 3557453 -239106900 - AluSx SINE Alu -21 291 1 425 294 107 19 chr1 3557707 3557999 -239106354 + L2 LINE L2 2750 3075 -238 1422 237 58 29 chr1 3558680 3558977 -239105376 - MLT1C LTR MaLR 0 467 151 1754 177 10 3 chr1 3558977 3559282 -239105071 + AluJb SINE Alu 1 307 -5 1422 237 58 29 chr1 3559282 3559431 -239104922 - MLT1C LTR MaLR -316 151 8 430 307 57 0 chr1 3559490 3559630 -239104723 + MIR SINE MIR 47 194 -68 2024 148 3 0 chr1 3560287 3560598 -239103755 - AluJo SINE Alu 0 312 1 2308 86 0 10 chr1 3561728 3562031 -239102322 + AluSc SINE Alu 1 300 -9 508 212 38 2 chr1 3562602 3562785 -239101568 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 3562945 3562966 -239101387 + AT_rich Low_complexity Low_complexity 1 21 0 2085 88 50 17 chr1 3563139 3563436 -239100917 + AluSp SINE Alu 1 307 -6 205 384 20 10 chr1 3563590 3563689 -239100664 - L2 LINE L2 -5 3267 3168 2034 185 57 35 chr1 3563907 3564139 -239100214 - L1MB8 LINE L1 -6 6172 5947 2007 95 32 18 chr1 3564139 3564424 -239099929 - AluSg SINE Alu -14 296 8 2034 185 57 35 chr1 3564424 3564518 -239099835 - L1MB8 LINE L1 -231 5947 5857 2255 98 0 3 chr1 3564518 3564813 -239099540 - AluSx SINE Alu -12 300 7 2034 185 57 35 chr1 3564813 3565032 -239099321 - L1MB8 LINE L1 -321 5857 5614 199 254 24 146 chr1 3565245 3565410 -239098943 + MER5A DNA MER1_type 21 165 -24 * 318 257 29 29 chr1 3565308 3565413 -239098940 - MER5A DNA MER1_type -52 137 33 1960 146 0 3 chr1 3568856 3569151 -239095202 + AluSx SINE Alu 1 294 -18 223 309 0 0 chr1 3569515 3569583 -239094770 + MIR SINE MIR 24 91 -117 352 329 81 33 chr1 3571763 3571973 -239092380 - MIR SINE MIR -31 231 12 2165 101 20 0 chr1 3575786 3576083 -239088270 + AluSx SINE Alu 1 303 -9 673 372 122 18 chr1 3576228 3576787 -239087566 + L3 LINE CR1 334 950 -627 977 133 118 0 chr1 3576828 3577039 -239087314 - L1MB4 LINE L1 0 6180 5945 882 185 29 0 chr1 3577046 3577219 -239087134 + MER58A DNA MER1_type 47 224 0 251 232 158 0 chr1 3577620 3577702 -239086651 - MIR SINE MIR -49 213 119 2175 96 0 7 chr1 3578017 3578309 -239086044 + AluSg SINE Alu 6 295 -15 818 254 62 102 chr1 3579005 3579525 -239084828 - MLT1D LTR MaLR -6 499 1 180 315 22 11 chr1 3579590 3579679 -239084674 - L2 LINE L2 -307 3006 2917 412 254 25 33 chr1 3579730 3579852 -239084501 - L2 LINE L2 -526 2788 2668 262 241 157 0 chr1 3579913 3579996 -239084357 - MER5A DNA MER1_type -83 106 11 471 278 83 14 chr1 3580007 3580223 -239084130 - L2 LINE L2 -649 2665 2435 1836 128 4 0 chr1 3580379 3580644 -239083709 + AluSx SINE Alu 34 299 -13 1394 153 66 35 chr1 3580654 3581001 -239083352 + L1MB3 LINE L1 5823 6180 -3 502 260 27 0 chr1 3581037 3581183 -239083170 + L1MC4a LINE L1 5813 5962 -1846 264 232 29 0 chr1 3581790 3581859 -239082494 + Charlie8 DNA MER1_type 127 197 -2220 233 330 104 0 chr1 3582540 3582583 -239081770 - L2 LINE L2 -4 3268 3231 1598 244 110 2 chr1 3582583 3583001 -239081352 - MLT1C LTR MaLR -4 463 1 233 330 104 0 chr1 3583001 3583063 -239081290 - L2 LINE L2 -41 3231 3152 186 331 76 45 chr1 3583469 3583626 -239080727 - L3 LINE CR1 -136 1441 1280 273 271 0 0 chr1 3585483 3585542 -239078811 + (CA)n Simple_repeat Simple_repeat 2 60 0 2096 106 20 0 chr1 3585644 3585936 -239078417 + AluSx SINE Alu 3 300 -12 205 347 76 18 chr1 3586780 3586943 -239077410 + MIR SINE MIR 18 186 -58 1730 139 55 45 chr1 3589156 3589328 -239075025 - AluJo SINE Alu 0 312 134 1771 147 25 73 chr1 3589328 3589655 -239074698 - AluJb SINE Alu 0 312 2 1730 139 55 45 chr1 3589655 3589791 -239074562 - AluJo SINE Alu -178 134 1 261 0 0 0 chr1 3589812 3589841 -239074512 + (TAA)n Simple_repeat Simple_repeat 2 30 0 287 329 73 18 chr1 3590352 3590516 -239073837 + MIR SINE MIR 8 180 -82 2161 106 0 13 chr1 3590809 3591110 -239073243 - AluSq SINE Alu -16 297 1 402 354 32 0 chr1 3595795 3595953 -239068400 + MIR SINE MIR 80 242 -20 575 284 57 44 chr1 3595978 3596207 -239068146 - MIR SINE MIR -14 248 17 239 232 0 29 chr1 3596970 3597039 -239067314 + C-rich Low_complexity Low_complexity 2 68 0 581 276 69 69 chr1 3598543 3598891 -239065462 - L2 LINE L2 -35 3278 2931 326 321 191 12 chr1 3598948 3599278 -239065075 - L2 LINE L2 -546 2768 2380 527 182 38 5 chr1 3607922 3608652 -239055701 + (TGGA)n Simple_repeat Simple_repeat 1 753 0 423 178 52 0 chr1 3608683 3609015 -239055338 + (TGGA)n Simple_repeat Simple_repeat 1 349 0 456 170 38 0 chr1 3609062 3609387 -239054966 + (TGGA)n Simple_repeat Simple_repeat 1 337 0 342 182 47 0 chr1 3609461 3609609 -239054744 + (TGGA)n Simple_repeat Simple_repeat 4 158 0 356 185 35 6 chr1 3609644 3609817 -239054536 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 205 246 16 0 chr1 3609822 3609883 -239054470 + GA-rich Low_complexity Low_complexity 3 64 0 336 205 19 0 chr1 3609885 3610041 -239054312 + (TGGA)n Simple_repeat Simple_repeat 4 162 0 624 247 64 70 chr1 3611901 3612056 -239052297 + MLT1C LTR MaLR 33 187 -280 2249 112 0 0 chr1 3612056 3612360 -239051993 + AluSx SINE Alu 1 304 -8 2328 102 0 0 chr1 3612360 3612665 -239051688 + AluSx SINE Alu 1 305 -7 624 247 64 70 chr1 3612665 3612820 -239051533 + MLT1C LTR MaLR 185 342 -125 1762 159 7 3 chr1 3614251 3614541 -239049812 + AluJb SINE Alu 1 291 -21 326 370 47 53 chr1 3614552 3614871 -239049482 + L1MEd LINE L1 196 512 -5693 357 334 63 88 chr1 3614924 3615076 -239049277 + L1MEd LINE L1 621 775 -5430 2389 60 0 17 chr1 3615076 3615375 -239048978 + AluSg SINE Alu 1 294 -16 357 334 63 88 chr1 3615375 3615496 -239048857 + L1MEd LINE L1 775 883 -5322 1202 107 11 165 chr1 3615496 3615768 -239048585 + MER30 DNA MER1_type 1 230 0 357 334 63 88 chr1 3615768 3615891 -239048462 + L1MEd LINE L1 883 1008 -5197 1911 91 0 0 chr1 3615891 3616134 -239048219 + AluSx SINE Alu 52 294 -18 1515 48 0 68 chr1 3616139 3616346 -239048007 + AluY SINE Alu 1 193 -118 297 219 0 0 chr1 3616419 3616483 -239047870 + MLT1E2 LTR MaLR 9 72 -582 1764 213 97 8 chr1 3616541 3617015 -239047338 + MLT1E2 LTR MaLR 111 626 0 427 328 35 39 chr1 3617143 3617375 -239046978 + L2 LINE L2 3083 3313 0 455 256 33 92 chr1 3617388 3617852 -239046501 + L1MEd LINE L1 1181 1645 -4751 3650 199 43 56 chr1 3618199 3618539 -239045814 + L1MB7 LINE L1 2113 2456 -3797 599 275 0 0 chr1 3618539 3618659 -239045694 + FLAM_A SINE Alu 1 120 -13 3650 199 43 56 chr1 3618659 3619222 -239045131 + L1MB7 LINE L1 2456 3025 -3228 2013 124 0 10 chr1 3619222 3619512 -239044841 + AluJb SINE Alu 21 307 -5 3650 199 43 56 chr1 3619512 3619811 -239044542 + L1MB7 LINE L1 3025 3326 -2927 2297 95 0 0 chr1 3619811 3620106 -239044247 - AluSq SINE Alu -18 295 1 3650 199 43 56 chr1 3620106 3620179 -239044174 + L1MB7 LINE L1 3326 6253 0 312 321 32 23 chr1 3620179 3620257 -239044096 + L1M4 LINE L1 2272 2348 -3798 1403 112 225 4 chr1 3620257 3620506 -239043847 - AluYb8 SINE Alu -14 304 1 312 321 32 23 chr1 3620506 3620773 -239043580 + L1M4 LINE L1 2348 2620 -3526 301 246 0 0 chr1 3620800 3620857 -239043496 + L1MC4 LINE L1 6647 6703 -1339 381 297 0 11 chr1 3620881 3620972 -239043381 - L1MC4 LINE L1 -1339 6703 6614 2173 122 0 0 chr1 3620973 3621269 -239043084 - AluSx SINE Alu -16 296 1 341 322 90 0 chr1 3621269 3621446 -239042907 + L1M4 LINE L1 2638 2830 -3316 653 123 98 33 chr1 3621498 3621620 -239042733 + FLAM_C SINE Alu 4 133 0 1334 94 0 0 chr1 3621630 3621800 -239042553 + AluSc SINE Alu 1 170 -139 1586 116 0 4 chr1 3621800 3622025 -239042328 + AluSc SINE Alu 70 293 -16 201 320 20 40 chr1 3622958 3623058 -239041295 + MIR3 SINE MIR 3 100 -108 338 314 41 8 chr1 3623147 3623268 -239041085 - MIR3 SINE MIR -71 137 13 3160 217 42 40 chr1 3623416 3623896 -239040457 + L1MB7 LINE L1 5302 5779 -405 2399 77 10 0 chr1 3623896 3624206 -239040147 + AluSq SINE Alu 1 313 0 3160 217 42 40 chr1 3624206 3624540 -239039813 + L1MB7 LINE L1 5779 6121 -63 2213 81 0 10 chr1 3624540 3624837 -239039516 - AluSx SINE Alu -18 294 1 3160 217 42 40 chr1 3624837 3624901 -239039452 + L1MB7 LINE L1 6121 6183 -1 204 205 0 0 chr1 3625218 3625257 -239039096 + GA-rich Low_complexity Low_complexity 1 39 0 192 261 82 67 chr1 3627918 3628052 -239036301 + L2 LINE L2 2976 3111 -161 2009 136 7 0 chr1 3628314 3628615 -239035738 + AluSx SINE Alu 1 303 -9 225 259 35 35 chr1 3631040 3631125 -239033228 + MIR3 SINE MIR 70 154 -54 310 297 68 7 chr1 3633345 3633493 -239030860 - HAL1b LINE L1 -806 542 386 494 316 84 85 chr1 3633514 3633972 -239030381 - L1MEc LINE L1 -1107 1469 982 270 0 0 0 chr1 3633989 3634019 -239030334 + (TC)n Simple_repeat Simple_repeat 1 30 0 938 168 6 12 chr1 3634021 3634182 -239030171 - AluJo SINE Alu -30 282 123 242 260 106 16 chr1 3634695 3634818 -239029535 + L2 LINE L2 3138 3271 -1 226 274 145 16 chr1 3636715 3636839 -239027514 - MIR SINE MIR -74 188 49 2080 116 10 7 chr1 3636847 3637148 -239027205 + AluSx SINE Alu 11 312 0 1741 151 3 7 chr1 3638231 3638515 -239025838 - AluJb SINE Alu -29 283 1 747 199 8 0 chr1 3638610 3638741 -239025612 - AluJo SINE Alu -180 132 1 219 296 114 0 chr1 3638743 3638831 -239025522 - MIR SINE MIR -113 149 52 599 190 0 49 chr1 3638835 3638977 -239025376 + MER45C DNA AcHobo 55 189 -764 696 206 221 32 chr1 3639066 3639202 -239025151 + MER45C DNA AcHobo 653 762 -819 1971 154 0 3 chr1 3639202 3639507 -239024846 + AluSx SINE Alu 1 304 -8 696 206 221 32 chr1 3639507 3639623 -239024730 + MER45C DNA AcHobo 762 953 0 2601 180 25 44 chr1 3639811 3640327 -239024026 + L1MB2 LINE L1 5586 6110 -61 257 0 30 0 chr1 3640327 3640360 -239023993 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2165 82 32 0 chr1 3640364 3640645 -239023708 - AluSq SINE Alu -23 290 1 1212 166 0 0 chr1 3640648 3640823 -239023530 - FAM SINE Alu 0 175 1 2601 180 25 44 chr1 3640823 3640887 -239023466 + L1MB2 LINE L1 6115 6164 -7 2302 94 3 0 chr1 3641229 3641536 -239022817 + AluSc SINE Alu 1 308 -1 268 176 0 0 chr1 3641536 3641587 -239022766 + MER5A DNA MER1_type 62 112 -77 371 241 152 18 chr1 3641628 3641740 -239022613 - MIR SINE MIR -60 202 76 1134 217 120 69 chr1 3641748 3641827 -239022526 + MLT1C LTR MaLR 10 84 -383 1454 165 137 4 chr1 3641827 3642110 -239022243 + AluJb SINE Alu 3 318 0 1907 122 7 10 chr1 3642110 3642435 -239021918 + AluSx SINE Alu 1 324 0 1686 141 7 4 chr1 3642442 3642711 -239021642 + AluSx SINE Alu 1 270 -42 210 37 0 0 chr1 3642715 3642742 -239021611 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1134 217 120 69 chr1 3642742 3643080 -239021273 + MLT1C LTR MaLR 91 465 -2 533 333 78 19 chr1 3643776 3644097 -239020256 + L2 LINE L2 2931 3270 -2 1731 130 87 0 chr1 3644165 3644441 -239019912 - AluJo SINE Alu -12 300 1 1233 101 6 22 chr1 3844629 3844647 -238819706 + AluSg/x SINE Alu 116 133 -177 2170 123 3 7 chr1 3844647 3844955 -238819398 + AluSx SINE Alu 1 307 -5 1233 101 6 22 chr1 3844955 3845109 -238819244 + AluSg/x SINE Alu 129 286 -20 237 33 0 0 chr1 3845109 3845139 -238819214 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 332 314 34 8 chr1 3845762 3845880 -238818473 + MIR SINE MIR 124 244 -18 2462 72 0 0 chr1 3845885 3846178 -238818175 - AluY SINE Alu -18 293 1 2446 87 3 0 chr1 3846531 3846830 -238817523 - AluSp SINE Alu -13 300 1 1481 210 4 0 chr1 3846877 3847129 -238817224 + AluJb SINE Alu 1 253 -59 1452 129 42 104 chr1 3847145 3847483 -238816870 + AluSx SINE Alu 1 312 0 663 70 0 0 chr1 3847493 3847579 -238816774 + L1PA10 LINE L1 5805 5890 -278 262 107 30 0 chr1 3847579 3847636 -238816717 + AluJb SINE Alu 117 170 -132 1331 143 82 4 chr1 3847636 3847880 -238816473 - L1PA11 LINE L1 -24 6150 5888 1244 150 0 0 chr1 3848003 3848190 -238816163 + AluJb SINE Alu 117 303 -9 276 308 14 7 chr1 3848593 3848705 -238815648 - MIR SINE MIR -51 211 100 2356 88 0 14 chr1 3849091 3849388 -238814965 + AluY SINE Alu 1 293 -18 1681 137 12 99 chr1 3849417 3849739 -238814614 + AluJo SINE Alu 1 294 -18 444 241 49 12 chr1 3849752 3849914 -238814439 + L2 LINE L2 2856 3023 -290 227 225 50 38 chr1 3849947 3850027 -238814326 + MIR SINE MIR 75 155 -107 1577 119 5 0 chr1 3850787 3851005 -238813348 + AluSx SINE Alu 1 219 -93 707 130 0 32 chr1 3851005 3851128 -238813225 + AluSg/x SINE Alu 188 306 -6 559 224 133 12 chr1 3851167 3851332 -238813021 - MER58 DNA MER1_type -2177 243 59 686 199 0 22 chr1 3852818 3852954 -238811399 + AluJo SINE Alu 2 134 -178 2122 123 0 0 chr1 3852955 3853232 -238811121 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 3853242 3853268 -238811085 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2197 84 7 3 chr1 3853268 3853554 -238810799 + AluY SINE Alu 1 287 -24 2317 91 0 26 chr1 3854074 3854244 -238810109 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 3854244 3854302 -238810051 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2059 114 4 4 chr1 3854302 3854582 -238809771 - AluSc SINE Alu -29 280 1 2317 91 0 26 chr1 3854582 3854719 -238809634 - AluSx SINE Alu -182 130 1 1594 140 85 51 chr1 3854719 3854875 -238809478 - AluJb SINE Alu -9 303 154 2180 82 4 0 chr1 3854875 3855155 -238809198 - AluY SINE Alu 0 311 31 1594 140 85 51 chr1 3855155 3855291 -238809062 - AluJb SINE Alu -158 154 1 2188 128 7 0 chr1 3855564 3855860 -238808493 + AluSg SINE Alu 1 298 -12 1827 157 14 7 chr1 3855878 3856172 -238808181 + AluSx SINE Alu 5 300 -12 2085 128 21 0 chr1 3856293 3856581 -238807772 + AluSx SINE Alu 5 298 -14 1414 135 24 0 chr1 3856746 3856954 -238807399 - AluSg/x SINE Alu -14 296 84 1825 163 0 14 chr1 3856982 3857277 -238807076 + AluJb SINE Alu 1 291 -21 700 110 0 0 chr1 3857285 3857385 -238806968 + AluS SINE Alu 2 101 -212 25 0 0 0 chr1 3857842 3857867 -238806486 + GC_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr1 3858859 3858899 -238805454 + GC_rich Low_complexity Low_complexity 1 40 0 189 246 0 0 chr1 3858929 3858994 -238805359 + C-rich Low_complexity Low_complexity 1 65 0 2162 107 10 10 chr1 3859332 3859642 -238804711 + AluSx SINE Alu 1 310 -2 1645 177 38 3 chr1 3859911 3860199 -238804154 - AluJb SINE Alu -14 298 1 1714 253 196 26 chr1 3860305 3861369 -238802984 - L2 LINE L2 -787 2527 1283 331 310 31 0 chr1 3861686 3861815 -238802538 - HAL1 LINE L1 -873 1634 1502 1188 127 0 33 chr1 3861829 3862010 -238802343 - AluSg/x SINE Alu -1 309 135 208 320 13 13 chr1 3862418 3862496 -238801857 - L2 LINE L2 -773 2541 2464 225 94 0 0 chr1 3863232 3863264 -238801089 + (TG)n Simple_repeat Simple_repeat 2 33 0 1361 128 59 0 chr1 3863264 3863468 -238800885 - AluJo SINE Alu -27 285 70 1553 185 0 58 chr1 3863481 3863643 -238800710 - AluJo SINE Alu -17 295 158 2217 114 14 0 chr1 3863643 3863933 -238800420 - AluSx SINE Alu -18 294 1 1553 185 0 58 chr1 3863933 3864078 -238800275 - AluJo SINE Alu -154 158 6 664 219 7 0 chr1 3864121 3864282 -238800071 + FRAM SINE Alu 9 170 0 2309 78 14 0 chr1 3864284 3864579 -238799774 + AluY SINE Alu 3 301 -10 1861 159 21 0 chr1 3864579 3864868 -238799485 + AluJo SINE Alu 1 295 -17 1067 73 0 0 chr1 3864892 3865015 -238799338 + AluSq/x SINE Alu 13 135 -177 2296 100 0 0 chr1 3865015 3865306 -238799047 + AluY SINE Alu 1 291 -20 2201 100 7 13 chr1 3865309 3865608 -238798745 + AluY SINE Alu 1 297 -14 280 241 114 0 chr1 3866217 3866296 -238798057 - L1MD3 LINE L1 -93 7902 7815 2033 117 10 10 chr1 3866298 3866589 -238797764 + AluSx SINE Alu 9 299 -13 1195 140 6 0 chr1 3866589 3866760 -238797593 + AluSg/x SINE Alu 134 305 -7 238 200 0 0 chr1 3866762 3866807 -238797546 - L1MC4a LINE L1 -150 7658 7614 422 161 0 37 chr1 3866837 3866918 -238797435 - U6 snRNA snRNA -29 78 1 2013 135 3 14 chr1 3866930 3867227 -238797126 - AluSx SINE Alu -18 294 1 382 140 18 0 chr1 3867247 3867316 -238797037 + AluJb SINE Alu 94 148 -154 2580 73 0 0 chr1 3867350 3867653 -238796700 + AluYa5 SINE Alu 1 303 -8 974 90 0 0 chr1 3867655 3867777 -238796576 + AluSp/q SINE Alu 170 291 -22 3193 159 58 20 chr1 3867804 3867988 -238796365 - L1MB4 LINE L1 -172 6008 5832 1749 178 13 16 chr1 3867988 3868292 -238796061 + AluJb SINE Alu 1 303 -9 3193 159 58 20 chr1 3868292 3868762 -238795591 - L1MB4 LINE L1 -348 5832 5329 2140 123 38 0 chr1 3868778 3869071 -238795282 - AluSx SINE Alu -8 304 1 2058 84 49 21 chr1 3869077 3869364 -238794989 - AluSq SINE Alu -1 312 18 302 307 42 85 chr1 3869561 3869646 -238794707 + L1MC4 LINE L1 5646 5733 -2075 615 186 65 16 chr1 3869646 3869770 -238794583 + FLAM_A SINE Alu 1 130 -3 302 307 42 85 chr1 3869770 3869873 -238794480 + L1MC4 LINE L1 5733 5826 -1982 2331 100 3 0 chr1 3869873 3870173 -238794180 + AluSx SINE Alu 1 301 -11 312 266 0 0 chr1 3870216 3870280 -238794073 + L1MC4 LINE L1 6640 6703 -1339 * 319 239 30 0 chr1 3870249 3870316 -238794037 + L1MCa LINE L1 1996 2064 -4362 * 356 298 0 0 chr1 3870284 3870401 -238793952 - L1MC4 LINE L1 -1139 6646 6571 189 0 0 0 chr1 3870403 3870424 -238793929 + (CA)n Simple_repeat Simple_repeat 2 22 0 1094 138 0 12 chr1 3870463 3870623 -238793730 + AluSx SINE Alu 1 158 -154 1658 85 0 0 chr1 3870623 3870823 -238793530 + AluY SINE Alu 101 300 -11 2492 52 3 0 chr1 3871441 3871728 -238792625 - AluY SINE Alu -23 288 1 2359 97 0 0 chr1 3871775 3872073 -238792280 + AluY SINE Alu 1 298 -13 1712 84 18 92 chr1 3872075 3872411 -238791942 + LTR14A LTR ERVK 54 343 -1 1924 270 24 22 chr1 3872417 3872513 -238791840 + HERVFH21 LTR ERV1 5932 6026 -503 2207 107 0 13 chr1 3872513 3872813 -238791540 - AluY SINE Alu -15 296 1 1924 270 24 22 chr1 3872813 3873237 -238791116 + HERVFH21 LTR ERV1 6026 6456 -73 2576 46 0 16 chr1 3873237 3873542 -238790811 - AluY SINE Alu -11 300 1 1924 270 24 22 chr1 3873542 3873617 -238790736 + HERVFH21 LTR ERV1 6456 6529 0 528 149 26 35 chr1 3873832 3873946 -238790407 + LTR21B LTR ERV1 326 438 0 2114 96 14 7 chr1 3873946 3874226 -238790127 - AluSp SINE Alu -31 282 1 1981 108 3 93 chr1 3874226 3874557 -238789796 - AluSq SINE Alu -11 302 1 2139 128 0 3 chr1 3874569 3874867 -238789486 - AluSx SINE Alu -15 297 1 236 178 0 0 chr1 3874868 3874887 -238789466 - MLT2D LTR ERVL -288 126 108 372 128 13 34 chr1 3874887 3874965 -238789388 + AluJo SINE Alu 1 52 -251 1516 161 0 29 chr1 3875066 3875339 -238789014 + AluJo SINE Alu 44 308 -4 192 279 0 0 chr1 3875457 3875500 -238788853 - L3 LINE CR1 -305 1272 1230 2241 103 7 3 chr1 3875730 3876030 -238788323 - AluSg SINE Alu -9 301 1 2187 122 0 10 chr1 3876057 3876348 -238788005 + AluSx SINE Alu 1 290 -22 225 0 0 0 chr1 3876348 3876373 -238787980 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2187 122 0 10 chr1 3876373 3876385 -238787968 + AluSx SINE Alu 290 301 -11 2663 55 0 0 chr1 3876588 3876895 -238787458 + AluY SINE Alu 1 307 -4 21 0 0 0 chr1 3878344 3878365 -238785988 + GC_rich Low_complexity Low_complexity 1 21 0 227 188 0 14 chr1 3878497 3878566 -238785787 + (CCCGAA)n Simple_repeat Simple_repeat 3 70 0 2329 97 0 10 chr1 3878888 3879197 -238785156 - AluSc SINE Alu -1 308 3 327 269 161 47 chr1 3879239 3879432 -238784921 - MIR SINE MIR -12 250 36 2333 111 0 0 chr1 3879647 3879945 -238784408 + AluSx SINE Alu 1 298 -14 212 262 0 0 chr1 3879947 3879989 -238784364 + polypurine Low_complexity Low_complexity 5 46 0 925 181 165 0 chr1 3879989 3880171 -238784182 + AluSx SINE Alu 1 212 -100 608 140 0 0 chr1 3880176 3880269 -238784084 + AluSp SINE Alu 141 233 -80 197 33 33 0 chr1 3880280 3880310 -238784043 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 663 70 0 0 chr1 3880329 3880415 -238783938 + L1PA10 LINE L1 5805 5890 -278 318 81 6 0 chr1 3880415 3880473 -238783880 + Alu SINE Alu 1 40 -262 1428 138 73 19 chr1 3880473 3880700 -238783653 - L1PA11 LINE L1 -24 6150 5906 2544 58 0 13 chr1 3880700 3881009 -238783344 - AluY SINE Alu -6 305 1 1428 138 73 19 chr1 3881009 3881041 -238783312 - L1PA11 LINE L1 -268 5906 5877 1338 134 43 94 chr1 3881148 3881477 -238782876 - AluSx SINE Alu 0 314 1 1481 210 4 0 chr1 3881493 3881745 -238782608 - AluJb SINE Alu -59 253 1 2363 90 3 0 chr1 3881792 3882082 -238782271 + AluSp SINE Alu 1 291 -22 3146 160 55 68 chr1 3882109 3882293 -238782060 - L1MB4 LINE L1 -172 6008 5823 1749 178 13 16 chr1 3882293 3882597 -238781756 + AluJb SINE Alu 1 303 -9 3146 160 55 68 chr1 3882597 3883083 -238781270 - L1MB4 LINE L1 -357 5823 5332 2140 123 38 0 chr1 3883083 3883376 -238780977 - AluSx SINE Alu -8 304 1 2187 99 43 16 chr1 3883382 3883686 -238780667 - AluSq SINE Alu -1 312 1 3146 160 55 68 chr1 3883686 3884012 -238780341 - L1MB4 LINE L1 -853 5327 5010 330 58 0 0 chr1 3884065 3884117 -238780236 - Alu SINE Alu 0 300 249 967 67 0 8 chr1 3884117 3884236 -238780117 - AluYb8 SINE Alu -200 118 1 902 230 118 0 chr1 3884237 3884507 -238779846 - L1MB4 LINE L1 -1118 5028 4727 * 2382 182 62 12 chr1 3884495 3885061 -238779292 - L1 LINE L1 -791 5355 4762 584 216 65 29 chr1 3885066 3885205 -238779148 - FRAM SINE Alu -30 146 3 21 0 0 0 chr1 3885225 3885246 -238779107 + AT_rich Low_complexity Low_complexity 1 21 0 1489 200 46 7 chr1 3885246 3885531 -238778822 - AluJo SINE Alu -16 296 1 886 173 26 108 chr1 3885531 3885695 -238778658 - AluJo SINE Alu -16 296 120 269 0 56 0 chr1 3885695 3885731 -238778622 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2376 71 0 0 chr1 3885731 3886012 -238778341 - AluY SINE Alu -30 281 1 886 173 26 108 chr1 3886012 3886077 -238778276 - AluJo SINE Alu -190 122 85 2417 94 0 3 chr1 3886133 3886432 -238777921 - AluSq SINE Alu -15 298 1 1325 260 28 65 chr1 3886645 3886969 -238777384 - L1MC4 LINE L1 -1110 6932 6631 2212 127 0 19 chr1 3886969 3887283 -238777070 + AluSx SINE Alu 3 310 -2 1325 260 28 65 chr1 3887283 3887451 -238776902 - L1MC4 LINE L1 -1411 6631 6458 511 238 94 59 chr1 3887727 3887890 -238776463 + MIR SINE MIR 15 188 -74 2477 85 3 0 chr1 3887890 3888195 -238776158 + AluSp SINE Alu 1 306 -7 511 238 94 59 chr1 3888195 3888233 -238776120 + MIR SINE MIR 188 223 -39 363 326 53 8 chr1 3888263 3888395 -238775958 + L2 LINE L2 3173 3310 -3 1980 167 0 7 chr1 3888881 3889186 -238775167 - AluSx SINE Alu -9 303 1 653 292 82 0 chr1 3890161 3890380 -238773973 - MIR SINE MIR -24 238 2 2328 100 0 0 chr1 3890564 3890863 -238773490 + AluY SINE Alu 1 299 -12 351 244 163 53 chr1 3891007 3891216 -238773137 - MIR SINE MIR -10 252 21 319 324 75 6 chr1 3891236 3891409 -238772944 - MIR SINE MIR -18 244 60 2284 101 3 3 chr1 3891599 3891905 -238772448 - AluSq SINE Alu -7 306 1 1024 179 0 42 chr1 3891930 3892120 -238772233 - AluSg/x SINE Alu -9 303 122 2236 138 0 0 chr1 3892121 3892433 -238771920 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 3892438 3892459 -238771894 + AT_rich Low_complexity Low_complexity 1 21 0 2293 107 3 0 chr1 3892459 3892768 -238771585 - AluSg SINE Alu 0 310 1 315 311 145 29 chr1 3893257 3893775 -238770578 + L2 LINE L2 2091 2668 -646 2264 117 3 0 chr1 3894123 3894423 -238769930 - AluSg SINE Alu -7 303 3 228 35 0 0 chr1 3894428 3894457 -238769896 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1634 120 8 8 chr1 3894476 3894710 -238769643 - AluSg SINE Alu -76 234 1 2306 96 7 3 chr1 3894810 3895113 -238769240 - AluSx SINE Alu -8 304 1 780 191 76 25 chr1 3896775 3896932 -238767421 + FRAM SINE Alu 1 165 -11 2361 77 0 3 chr1 3897038 3897338 -238767015 + AluY SINE Alu 1 299 -12 2368 78 3 0 chr1 3898473 3898779 -238765574 - AluSq SINE Alu -6 307 1 2007 106 0 4 chr1 3898890 3899165 -238765188 - AluSg SINE Alu -5 305 32 2468 66 0 0 chr1 3899171 3899473 -238764880 - AluSg SINE Alu -8 302 1 2041 131 13 0 chr1 3899501 3899807 -238764546 - AluSx SINE Alu 0 312 3 1270 86 6 17 chr1 3899839 3900013 -238764340 - AluSg SINE Alu -138 172 1 309 305 76 8 chr1 3900045 3900176 -238764177 + MIR SINE MIR 11 150 -112 191 375 67 42 chr1 3900401 3900521 -238763832 - L3b LINE CR1 -73 1510 1388 334 263 202 0 chr1 3900654 3900768 -238763585 - L1ME4a LINE L1 -215 5906 5770 1976 126 23 19 chr1 3900887 3901197 -238763156 - AluSx SINE Alu -1 311 1 803 141 0 8 chr1 3901437 3901565 -238762788 + FLAM_C SINE Alu 13 139 -4 2343 68 3 0 chr1 3902936 3903230 -238761123 + AluY SINE Alu 2 296 -15 193 274 27 27 chr1 3903303 3903376 -238760977 + MIR3 SINE MIR 124 196 -12 2332 84 7 0 chr1 3903488 3903798 -238760555 - AluSp SINE Alu -1 312 1 455 172 0 0 chr1 3903868 3903932 -238760421 + T-rich Low_complexity Low_complexity 1 64 0 736 260 0 9 chr1 3904032 3904263 -238760090 - HERVFH21 LTR ERV1 -1618 6781 6553 4523 144 14 4 chr1 3904598 3905473 -238758880 - HERVFH21 LTR ERV1 -1200 5329 4572 1606 264 50 23 chr1 3905510 3905933 -238758420 - HERVFH21 LTR ERV1 -64 6465 6024 2107 107 0 13 chr1 3905933 3906233 -238758120 + AluY SINE Alu 1 296 -15 1606 264 50 23 chr1 3906233 3906329 -238758024 - HERVFH21 LTR ERV1 -505 6024 5932 1676 115 146 6 chr1 3906335 3906673 -238757680 - LTR14B LTR ERVK -1 607 318 2280 94 0 0 chr1 3906673 3906971 -238757382 - AluY SINE Alu -13 298 1 1676 115 146 6 chr1 3906971 3907085 -238757268 - LTR14B LTR ERVK -290 318 1 4681 259 4 14 chr1 3907087 3908298 -238756055 - HERVFH21 LTR ERV1 -648 7751 6553 5085 139 13 3 chr1 3908633 3909591 -238754762 - HERVFH21 LTR ERV1 -1200 5329 4540 2130 251 17 0 chr1 3909585 3910108 -238754245 - HERVFH21 LTR ERV1 -2649 3880 3349 * 812 112 0 0 chr1 3910108 3910224 -238754129 - AluSg/x SINE Alu -4 306 191 11754 197 22 38 chr1 3910224 3911113 -238753240 - HERVFH21 LTR ERV1 -3172 3357 2455 2238 74 3 0 chr1 3911113 3911397 -238752956 - AluY SINE Alu -26 285 1 11754 197 22 38 chr1 3911397 3911783 -238752570 - HERVFH21 LTR ERV1 -4074 2455 2064 2522 47 3 0 chr1 3911783 3912083 -238752270 + AluY SINE Alu 1 301 -10 11754 197 22 38 chr1 3912083 3912671 -238751682 - HERVFH21 LTR ERV1 -4465 2064 1468 2340 73 0 19 chr1 3912671 3912986 -238751367 + AluY SINE Alu 1 309 -2 11754 197 22 38 chr1 3912986 3914608 -238749745 - HERVFH21 LTR ERV1 -5061 1468 5 576 143 33 44 chr1 3914608 3914786 -238749567 - LTR21B LTR ERV1 0 438 310 777 191 77 59 chr1 3914954 3915174 -238749179 + MLT2D LTR ERVL 188 411 -3 182 183 17 100 chr1 3915289 3915349 -238749004 + L3 LINE CR1 1516 1570 -7 1778 140 37 0 chr1 3916050 3916322 -238748031 + AluSx SINE Alu 1 282 -30 1791 155 31 3 chr1 3916768 3917059 -238747294 - AluJo SINE Alu -9 303 5 253 413 18 6 chr1 3917503 3917670 -238746683 + L2 LINE L2 2545 2713 -601 2123 109 0 3 chr1 3917683 3917976 -238746377 + AluSg SINE Alu 6 297 -13 2714 89 105 7 chr1 3918036 3918156 -238746197 - MER1A DNA MER1_type -2173 529 422 2419 65 0 3 chr1 3918156 3918466 -238745887 - AluY SINE Alu -2 309 1 2714 89 105 7 chr1 3918466 3918794 -238745559 - MER1A DNA MER1_type -2280 422 37 317 356 97 8 chr1 3918803 3919050 -238745303 + L2 LINE L2 2830 3098 -174 199 265 59 0 chr1 3919051 3919119 -238745234 + L2 LINE L2 3200 3271 -1 1888 107 7 15 chr1 3920016 3920189 -238744164 - AluSx SINE Alu 0 308 136 2350 81 0 7 chr1 3920189 3920497 -238743856 - AluY SINE Alu -5 306 1 1888 107 7 15 chr1 3920497 3920619 -238743734 - AluSx SINE Alu -172 136 15 2096 94 31 3 chr1 3921757 3922043 -238742310 + AluSx SINE Alu 3 296 -16 2439 71 0 10 chr1 3922046 3922356 -238741997 + AluSq SINE Alu 1 307 -6 189 0 0 0 chr1 3923286 3923307 -238741046 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1935 141 0 20 chr1 3925879 3926183 -238738170 + AluJb SINE Alu 1 298 -14 850 131 0 44 chr1 3927336 3927473 -238736880 - FLAM_C SINE Alu -2 131 1 2113 127 3 3 chr1 3927484 3927792 -238736561 - AluSc SINE Alu -1 308 1 2265 98 3 0 chr1 3927796 3928102 -238736251 - AluSg SINE Alu -3 307 1 2020 117 10 10 chr1 3928104 3928271 -238736082 - AluSg SINE Alu -10 300 131 2221 99 0 16 chr1 3928271 3928585 -238735768 - AluSg SINE Alu -1 309 1 2020 117 10 10 chr1 3928585 3928717 -238735636 - AluSg SINE Alu -178 132 1 584 251 61 0 chr1 3928723 3928886 -238735467 - MER3 DNA MER1_type -83 126 1 541 286 129 40 chr1 3929393 3930071 -238734282 - L2 LINE L2 -19 3294 2554 780 188 0 0 chr1 3934444 3934577 -238729776 + AluSg/x SINE Alu 172 304 -6 749 186 0 0 chr1 3934925 3935043 -238729310 - AluJb SINE Alu -194 118 1 313 308 14 7 chr1 3938426 3938538 -238725815 - MIR SINE MIR -51 211 100 2241 88 0 14 chr1 3938924 3939221 -238725132 + AluY SINE Alu 1 293 -18 1639 136 9 99 chr1 3939250 3939573 -238724780 + AluJo SINE Alu 1 294 -18 488 241 49 12 chr1 3939586 3939748 -238724605 + L2 LINE L2 2856 3023 -290 229 250 38 25 chr1 3939781 3939861 -238724492 + MIR SINE MIR 75 155 -107 1509 119 5 0 chr1 3940621 3940839 -238723514 + AluSx SINE Alu 1 219 -93 759 130 0 32 chr1 3940839 3940962 -238723391 + AluSg/x SINE Alu 188 306 -6 531 224 133 12 chr1 3941001 3941166 -238723187 - MER58 DNA MER1_type -2177 243 59 745 197 0 22 chr1 3942653 3942790 -238721563 + AluJo SINE Alu 1 134 -178 2026 123 0 0 chr1 3942791 3943068 -238721285 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 3943078 3943104 -238721249 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2361 80 0 3 chr1 3943104 3943415 -238720938 + AluY SINE Alu 1 310 -1 181 217 22 22 chr1 3943429 3943475 -238720878 + MIR SINE MIR 106 151 -111 260 277 0 85 chr1 3944452 3944550 -238719803 + L1ME3A LINE L1 6052 6138 -32 1943 149 10 0 chr1 3944550 3944846 -238719507 - AluJb SINE Alu -13 299 1 260 277 0 85 chr1 3944846 3944877 -238719476 + L1ME3A LINE L1 6138 6170 0 30 77 0 0 chr1 3947476 3947541 -238716812 + GC_rich Low_complexity Low_complexity 1 65 0 1396 117 120 62 chr1 3949244 3949518 -238714835 + AluSx SINE Alu 1 290 -12 548 214 179 29 chr1 3949530 3949670 -238714683 + FRAM SINE Alu 1 161 -5 515 133 133 0 chr1 3949962 3950052 -238714301 - AluSc SINE Alu -17 292 191 769 124 0 0 chr1 3950054 3950167 -238714186 + AluSg/x SINE Alu 196 308 -2 2141 99 3 3 chr1 3950353 3950646 -238713707 - AluSx SINE Alu -19 293 1 1744 163 0 14 chr1 3950654 3950949 -238713404 - AluJb SINE Alu -21 291 1 1373 133 24 0 chr1 3950977 3951187 -238713166 + AluSg/x SINE Alu 84 298 -12 1989 128 21 0 chr1 3951350 3951638 -238712715 - AluSx SINE Alu -14 298 5 1743 157 14 7 chr1 3951759 3952053 -238712300 - AluSx SINE Alu -12 300 5 2091 128 7 0 chr1 3952071 3952367 -238711986 - AluSg SINE Alu -12 298 1 1519 143 85 51 chr1 3952640 3952776 -238711577 + AluJb SINE Alu 1 131 -181 2080 82 4 0 chr1 3952776 3953056 -238711297 + AluY SINE Alu 31 311 0 1519 143 85 51 chr1 3953056 3953212 -238711141 + AluJb SINE Alu 131 303 -9 2205 91 0 26 chr1 3953212 3953349 -238711004 + AluSx SINE Alu 1 140 -172 1966 114 4 4 chr1 3953349 3953687 -238710666 + AluSc SINE Alu 1 338 0 2205 91 0 26 chr1 3953687 3953857 -238710496 + AluSx SINE Alu 140 301 -11 2078 85 0 0 chr1 3954377 3954647 -238709706 - AluSc SINE Alu -24 285 16 2031 124 10 3 chr1 3954913 3955212 -238709141 + AluSq SINE Alu 3 303 -10 844 162 26 26 chr1 3955403 3955594 -238708759 + AluJo SINE Alu 4 194 -118 728 67 0 0 chr1 3955597 3955687 -238708666 - AluSp/q SINE Alu -16 297 208 816 78 0 0 chr1 3955691 3955793 -238708560 - AluS SINE Alu -211 102 1 2187 89 3 0 chr1 3955934 3956227 -238708126 + AluSc SINE Alu 1 294 -15 198 0 0 0 chr1 3956562 3956584 -238707769 + (CAA)n Simple_repeat Simple_repeat 2 23 0 201 143 0 0 chr1 3956621 3956656 -238707697 - MIR SINE MIR -66 142 108 2471 54 0 0 chr1 3956657 3956954 -238707399 - AluSg SINE Alu -13 297 1 211 306 0 25 chr1 3957857 3957978 -238706375 + (CCG)n Simple_repeat Simple_repeat 1 118 0 * 246 210 8 89 chr1 3957890 3958014 -238706339 + C-rich Low_complexity Low_complexity 6 119 0 217 196 0 89 chr1 3958453 3958565 -238705788 + C-rich Low_complexity Low_complexity 4 105 0 25 31 0 0 chr1 3959078 3959110 -238705243 + GC_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr1 3959244 3959270 -238705083 + GC_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 3959627 3959650 -238704703 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr1 3959683 3959733 -238704620 + GC_rich Low_complexity Low_complexity 1 50 0 2362 60 3 3 chr1 3960529 3960829 -238703524 - AluSg SINE Alu -9 301 2 1719 130 69 0 chr1 3961611 3961887 -238702466 - AluSx SINE Alu -17 295 1 1913 116 33 10 chr1 3961931 3962232 -238702121 - AluSg SINE Alu -2 308 1 490 254 40 20 chr1 3962305 3962467 -238701886 - MIR SINE MIR -62 146 12 1838 148 10 0 chr1 3962645 3962936 -238701417 - AluJb SINE Alu -18 294 1 694 163 106 0 chr1 3962937 3963060 -238701293 - AluJo SINE Alu -176 136 1 2163 115 0 10 chr1 3963137 3963450 -238700903 - AluSx SINE Alu -2 310 1 2022 98 42 7 chr1 3963856 3964142 -238700211 - AluSq SINE Alu -17 296 1 205 179 0 0 chr1 3964495 3964534 -238699819 + GA-rich Low_complexity Low_complexity 2 40 0 1868 147 7 7 chr1 3965108 3965241 -238699112 + AluJo SINE Alu 1 133 -179 2220 80 6 45 chr1 3965241 3965553 -238698800 + AluSg SINE Alu 1 300 -10 1868 147 7 7 chr1 3965553 3965719 -238698634 + AluJo SINE Alu 132 300 -12 2116 117 0 10 chr1 3968768 3969076 -238695277 - AluSq SINE Alu -8 305 1 24 0 0 0 chr1 3969942 3969966 -238694387 + GC_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr1 3970249 3970273 -238694080 + (CCCGG)n Simple_repeat Simple_repeat 3 26 0 212 306 45 45 chr1 3970300 3970411 -238693942 + L2 LINE L2 1724 1834 -1480 362 239 91 77 chr1 3970424 3970529 -238693824 - L1ME3A LINE L1 -9 6161 6059 1968 124 7 7 chr1 3970529 3970827 -238693526 + AluJo SINE Alu 1 298 -14 362 239 91 77 chr1 3970827 3970930 -238693423 - L1ME3A LINE L1 -111 6059 5950 363 230 32 97 chr1 3970934 3971059 -238693294 - L1ME3A LINE L1 -352 5826 5719 2204 90 0 26 chr1 3971059 3971369 -238692984 + AluSx SINE Alu 1 302 -10 363 230 32 97 chr1 3971369 3971460 -238692893 - L1ME3A LINE L1 -459 5719 5624 445 290 172 56 chr1 3971533 3971876 -238692477 + L2 LINE L2 1952 2254 -1060 1987 134 3 0 chr1 3971876 3972168 -238692185 - AluSx SINE Alu -19 293 1 445 290 172 56 chr1 3972168 3972342 -238692011 + L2 LINE L2 2254 2586 -728 247 360 198 7 chr1 3972483 3972761 -238691592 + L2 LINE L2 2966 3296 -17 1739 109 4 0 chr1 3973423 3973661 -238690692 + AluSq SINE Alu 1 239 -74 330 343 171 0 chr1 3973897 3974247 -238690106 + L2 LINE L2 2903 3312 -1 2163 95 14 3 chr1 3975077 3975373 -238688980 - AluSx SINE Alu -11 301 3 814 191 0 0 chr1 3975381 3975512 -238688841 - FLAM_C SINE Alu -2 131 1 1553 185 3 39 chr1 3975512 3975820 -238688533 - AluJo SINE Alu -15 297 1 1253 157 0 27 chr1 3975849 3976072 -238688281 + AluJo SINE Alu 1 217 -95 426 39 0 0 chr1 3976073 3976125 -238688228 + AluSg/x SINE Alu 82 133 -177 1869 108 72 4 chr1 3976126 3976404 -238687949 + AluSq SINE Alu 1 297 -16 1268 175 15 105 chr1 3976406 3976731 -238687622 + AluJb SINE Alu 1 296 -16 2013 113 0 27 chr1 3978130 3978430 -238685923 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr1 3980064 3980088 -238684265 + AT_rich Low_complexity Low_complexity 1 24 0 225 208 21 0 chr1 3981156 3981204 -238683149 + L2 LINE L2 3223 3271 -1 1969 154 0 3 chr1 3981354 3981653 -238682700 - AluJb SINE Alu -14 298 1 335 246 154 51 chr1 3982320 3982495 -238681858 + Charlie8 DNA MER1_type 77 269 -2148 797 128 0 38 chr1 3983182 3983315 -238681038 - FLAM_C SINE Alu 0 143 16 2232 102 0 7 chr1 3983832 3984135 -238680218 - AluSx SINE Alu -11 301 1 546 317 43 0 chr1 3984228 3984389 -238679964 - MIR SINE MIR -3 259 92 226 187 227 53 chr1 3984975 3985050 -238679303 + L1ME LINE L1 570 657 -5977 1675 112 73 15 chr1 3985053 3985312 -238679041 + AluSq SINE Alu 1 274 -39 349 278 115 27 chr1 3985313 3985580 -238678773 + L1ME LINE L1 1460 2198 -4447 402 270 80 58 chr1 3985587 3985607 -238678746 + L1ME LINE L1 2730 2748 -3896 2128 97 35 0 chr1 3985607 3985895 -238678458 + AluSq SINE Alu 1 298 -15 402 270 80 58 chr1 3985895 3985910 -238678443 + L1ME LINE L1 2748 2761 -3883 246 32 0 0 chr1 3985910 3985941 -238678412 + (CA)n Simple_repeat Simple_repeat 2 32 0 402 270 80 58 chr1 3985941 3986041 -238678312 + L1ME LINE L1 2761 2869 -3775 706 157 50 25 chr1 3986041 3986162 -238678191 - FRAM SINE Alu -15 161 38 1313 286 151 67 chr1 3986285 3987061 -238677292 - L2 LINE L2 -19 3294 2585 847 173 0 0 chr1 3987061 3987194 -238677159 + FLAM_C SINE Alu 1 133 0 1313 286 151 67 chr1 3987194 3987781 -238676572 - L2 LINE L2 -728 2585 1797 2424 57 3 0 chr1 3987781 3988078 -238676275 - AluY SINE Alu -13 298 1 1313 286 151 67 chr1 3988078 3988105 -238676248 - L2 LINE L2 -1516 1797 1774 1870 76 0 0 chr1 3988382 3988618 -238675735 - AluY SINE Alu -20 291 56 2145 102 10 20 chr1 3988632 3988937 -238675416 - AluSx SINE Alu -10 302 1 501 310 7 0 chr1 3989785 3989927 -238674426 + Charlie8 DNA MER1_type 78 220 -2197 274 291 172 0 chr1 3990849 3991000 -238673353 - MER5B DNA MER1_type 0 178 2 * 336 240 70 47 chr1 3991000 3991116 -238673237 + MER5B DNA MER1_type 60 178 0 941 183 56 10 chr1 3991380 3991577 -238672776 + AluJb SINE Alu 4 209 -103 2139 99 23 13 chr1 3991582 3991886 -238672467 - AluSq SINE Alu -6 307 1 315 191 16 0 chr1 3991893 3991956 -238672397 + Tigger5 DNA MER2_type 2260 2323 0 2298 95 10 0 chr1 3992041 3992347 -238672006 + AluSc SINE Alu 1 309 0 250 247 39 26 chr1 3992567 3992644 -238671709 - MER5A DNA MER1_type -1 188 111 2340 84 0 3 chr1 3992660 3992959 -238671394 - AluSx SINE Alu -14 298 1 2008 145 3 0 chr1 3992963 3993259 -238671094 - AluJb SINE Alu -15 297 1 751 236 36 0 chr1 3993507 3993672 -238670681 - AluJb SINE Alu -21 291 121 2257 60 35 0 chr1 3993689 3993972 -238670381 - AluY SINE Alu -18 293 1 1564 113 18 0 chr1 3994216 3994438 -238669915 - AluSg/x SINE Alu -15 297 72 1512 152 86 4 chr1 3994507 3994776 -238669577 + AluJb SINE Alu 3 293 -19 1609 210 0 0 chr1 3994798 3995093 -238669260 + AluJo SINE Alu 12 306 -6 2167 110 3 7 chr1 3995095 3995404 -238668949 + AluSx SINE Alu 1 308 -4 1449 112 0 40 chr1 3996934 3997157 -238667196 - AluSq SINE Alu -13 300 87 2282 66 0 62 chr1 3999280 3999600 -238664753 - AluSc SINE Alu -9 300 1 1704 136 54 4 chr1 4000044 4000323 -238664030 + AluSx SINE Alu 1 293 -19 2272 96 0 0 chr1 4000325 4000626 -238663727 + AluSg SINE Alu 1 301 -9 1082 227 103 22 chr1 4000626 4001100 -238663253 - MER114 LTR ERV -70 578 2 1385 171 0 113 chr1 4001100 4001428 -238662925 + AluJb SINE Alu 1 291 -21 445 232 92 109 chr1 4001531 4002092 -238662261 + MLT1H1 LTR MaLR 1 548 -1 2313 56 0 3 chr1 4002161 4002448 -238661905 - AluY SINE Alu -25 286 1 890 153 82 0 chr1 4002485 4002655 -238661698 - Tigger1 DNA MER2_type -491 1927 1744 601 290 55 21 chr1 4002662 4002952 -238661401 + HAL1 LINE L1 1880 2179 -328 505 258 31 25 chr1 4002994 4003153 -238661200 + HAL1 LINE L1 2346 2505 -2 1018 260 58 68 chr1 4003750 4003981 -238660372 + L2 LINE L2 2833 3065 -248 1920 127 3 7 chr1 4003981 4004273 -238660080 + AluSq SINE Alu 1 291 -22 2403 54 3 13 chr1 4004279 4004593 -238659760 + AluY SINE Alu 1 311 0 1018 260 58 68 chr1 4004593 4004665 -238659688 + L2 LINE L2 3070 3141 -172 2135 105 3 0 chr1 4004665 4004959 -238659394 - AluSx SINE Alu -17 295 1 1018 260 58 68 chr1 4004959 4005132 -238659221 + L2 LINE L2 3141 3312 -1 225 317 244 16 chr1 4005228 4005474 -238658879 - L3 LINE CR1 -756 821 520 398 271 37 0 chr1 4005529 4005636 -238658717 - L1MA9 LINE L1 -22 6290 6180 1043 109 0 152 chr1 4006454 4006684 -238657669 - AluJb SINE Alu -31 281 87 2006 100 0 0 chr1 4006696 4006967 -238657386 - AluSq SINE Alu -12 301 31 251 250 0 0 chr1 4006967 4007019 -238657334 + LTR30 LTR ERV1 1 52 -670 287 125 0 21 chr1 4007027 4007075 -238657278 + LTR12 LTR ERV1 138 184 -530 1402 82 11 149 chr1 4007075 4007343 -238657010 + LTR12 LTR ERV1 55 285 -429 352 212 35 0 chr1 4007344 4007429 -238656924 + LTR30 LTR ERV1 556 643 -79 633 135 42 0 chr1 4007429 4007525 -238656828 + LTR12 LTR ERV1 613 712 -2 230 194 0 0 chr1 4007525 4007561 -238656792 - AluSq SINE Alu -267 36 1 264 277 54 31 chr1 4008364 4008494 -238655859 - MIR SINE MIR -60 148 16 2449 66 3 0 chr1 4008736 4009041 -238655312 - AluY SINE Alu -5 306 1 1667 174 3 3 chr1 4009581 4009868 -238654485 - AluJo SINE Alu -21 291 5 2123 92 0 46 chr1 4010880 4011205 -238653148 - AluSx SINE Alu -2 310 1 2158 85 7 10 chr1 4012636 4012941 -238651412 - AluY SINE Alu -7 304 1 784 191 0 0 chr1 4013104 4013235 -238651118 - FLAM_C SINE Alu 0 133 3 2179 122 0 0 chr1 4013408 4013719 -238650634 + AluSx SINE Alu 1 311 -1 2153 81 0 11 chr1 4013731 4014081 -238650272 + AluSq SINE Alu 1 347 0 1807 76 0 20 chr1 4014460 4014711 -238649642 - AluY SINE Alu -15 296 51 204 40 0 0 chr1 4015697 4015722 -238648631 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 2222 73 21 0 chr1 4015753 4016039 -238648314 - AluY SINE Alu -19 292 1 1991 96 43 3 chr1 4016040 4016322 -238648031 - AluY SINE Alu -17 294 2 2058 144 0 0 chr1 4016326 4016638 -238647715 - AluSx SINE Alu 0 312 1 1783 117 7 4 chr1 4017456 4017729 -238646624 + AluSq SINE Alu 40 313 0 398 106 0 26 chr1 4017729 4017806 -238646547 + AluJ SINE Alu 68 130 -172 350 294 59 10 chr1 4017902 4018004 -238646349 + MIR3 SINE MIR 82 188 -20 1466 200 27 21 chr1 4018005 4018335 -238646018 - L1MD3 LINE L1 -6 7989 7658 2218 103 3 0 chr1 4018782 4019083 -238645270 + AluSx SINE Alu 1 302 -10 1023 156 6 0 chr1 4019083 4019243 -238645110 + AluJ SINE Alu 134 294 -18 1607 176 10 26 chr1 4019913 4020226 -238644127 - AluJb SINE Alu -4 308 1 497 230 197 0 chr1 4020704 4020891 -238643462 - Charlie8 DNA MER1_type -2131 286 40 1651 152 0 0 chr1 4020901 4021170 -238643183 + AluJo SINE Alu 1 269 -43 2031 89 62 7 chr1 4021395 4021687 -238642666 + AluSp SINE Alu 1 308 -5 1764 149 3 17 chr1 4021796 4022098 -238642255 - AluJo SINE Alu -12 300 3 265 340 21 7 chr1 4022159 4022293 -238642060 - MIR SINE MIR -64 144 20 273 242 55 117 chr1 4022619 4022747 -238641606 - MIR3 SINE MIR -39 169 50 1679 174 14 0 chr1 4023176 4023452 -238640901 - AluJo SINE Alu -32 280 1 25 0 0 0 chr1 4024684 4024709 -238639644 + AT_rich Low_complexity Low_complexity 1 25 0 922 121 27 0 chr1 4024709 4024858 -238639495 - L1MB4 LINE L1 -6 6174 6022 180 0 0 0 chr1 4026667 4026687 -238637666 + (A)n Simple_repeat Simple_repeat 1 20 0 1325 204 15 4 chr1 4027149 4027419 -238636934 + AluJb SINE Alu 1 273 -39 449 312 99 14 chr1 4027763 4027984 -238636369 + MIR SINE MIR 12 251 -11 336 287 73 30 chr1 4027972 4028136 -238636217 + MIR SINE MIR 90 260 -2 * 373 192 0 0 chr1 4028257 4028330 -238636023 + L1ME3A LINE L1 6090 6162 -8 2210 106 0 3 chr1 4028582 4028885 -238635468 - AluSx SINE Alu -10 302 1 485 246 9 0 chr1 4029379 4029489 -238634864 + L1M4 LINE L1 2718 2828 -3318 830 155 88 44 chr1 4029489 4029670 -238634683 + AluJo SINE Alu 1 189 -123 1823 196 64 41 chr1 4029738 4029912 -238634441 + Charlie1 DNA MER1_type 1 170 -2591 2200 158 136 2 chr1 4029912 4030330 -238634023 + MER101 LTR ERV1 1 474 0 1823 196 64 41 chr1 4030330 4030639 -238633714 + Charlie1 DNA MER1_type 170 495 -2266 635 97 35 53 chr1 4030609 4030723 -238633630 + Charlie1 DNA MER1_type 2618 2729 -32 * 278 170 38 0 chr1 4030825 4030878 -238633475 + Charlie1 DNA MER1_type 2707 2761 0 * 986 266 110 30 chr1 4030878 4031240 -238633113 - MLT1I LTR MaLR -16 393 3 2463 53 0 3 chr1 4031858 4032160 -238632193 - AluY SINE Alu -10 301 1 462 256 64 8 chr1 4033377 4033502 -238630851 - L2 LINE L2 -4 3268 3137 225 377 91 32 chr1 4033544 4033918 -238630435 - L2 LINE L2 -502 2812 2417 1879 88 55 4 chr1 4034019 4034293 -238630060 + AluSp SINE Alu 11 298 -15 312 294 69 0 chr1 4034473 4034575 -238629778 - MIR SINE MIR -66 196 88 288 311 198 6 chr1 4034837 4035004 -238629349 - MIR SINE MIR -43 219 21 1669 55 0 0 chr1 4035148 4035350 -238629003 + AluY SINE Alu 3 204 -107 2286 93 0 0 chr1 4037113 4037414 -238626939 - AluSp SINE Alu -12 301 1 1901 126 7 27 chr1 4037416 4037717 -238626636 - AluSx SINE Alu -17 295 1 2045 99 0 11 chr1 4037903 4038185 -238626168 - AluSg SINE Alu -31 279 1 23 0 0 0 chr1 4038185 4038208 -238626145 + AT_rich Low_complexity Low_complexity 1 23 0 612 198 0 0 chr1 4038221 4038322 -238626031 - FRAM SINE Alu -24 152 52 843 157 119 27 chr1 4038322 4038338 -238626015 + LTR36 LTR ERV1 3 16 -595 2019 119 13 3 chr1 4038338 4038640 -238625713 - AluSx SINE Alu -7 305 1 843 157 119 27 chr1 4038640 4038808 -238625545 + LTR36 LTR ERV1 16 204 -407 908 234 172 7 chr1 4038842 4039115 -238625238 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 4039166 4039187 -238625166 + AT_rich Low_complexity Low_complexity 1 21 0 2304 64 0 32 chr1 4039187 4039500 -238624853 + AluY SINE Alu 1 303 -8 1236 79 12 0 chr1 4039502 4039666 -238624687 + AluY SINE Alu 135 300 -11 747 141 0 62 chr1 4039666 4039794 -238624559 - AluJo/FLAM SINE Alu -182 130 11 187 298 35 114 chr1 4039854 4040013 -238624340 - MIR SINE MIR 0 262 129 1988 111 0 57 chr1 4040013 4040328 -238624025 + AluSg SINE Alu 1 297 -13 187 298 35 114 chr1 4040328 4040423 -238623930 - MIR SINE MIR -133 129 28 239 336 79 14 chr1 4040456 4040581 -238623772 - MIR SINE MIR -61 147 33 1758 123 38 131 chr1 4041828 4042195 -238622158 - MER1B DNA MER1_type -4 333 1 2185 47 54 0 chr1 4042313 4042592 -238621761 - AluY SINE Alu -17 294 1 27 29 0 0 chr1 4043129 4043163 -238621190 + AT_rich Low_complexity Low_complexity 1 34 0 1606 159 0 4 chr1 4043163 4043427 -238620926 + AluJb SINE Alu 1 263 -49 270 138 0 0 chr1 4043435 4043493 -238620860 + (TA)n Simple_repeat Simple_repeat 1 58 0 1625 159 35 3 chr1 4043527 4043817 -238620536 + AluJo SINE Alu 1 299 -13 924 57 0 16 chr1 4044147 4044269 -238620084 + L1PA8 LINE L1 6050 6169 -3 1450 156 62 127 chr1 4044434 4044915 -238619438 + LTR7 LTR ERV1 1 450 0 849 288 17 13 chr1 4044975 4045211 -238619142 + MIR SINE MIR 1 237 -25 1986 87 24 20 chr1 4046637 4046935 -238617418 - AluSx SINE Alu -13 299 1 2483 62 0 0 chr1 4047965 4048272 -238616081 - AluSg SINE Alu -3 307 1 2595 63 0 19 chr1 4048342 4048659 -238615694 - AluY SINE Alu 0 311 1 1828 180 6 3 chr1 4049165 4049476 -238614877 - AluJo SINE Alu 0 312 1 2236 133 0 0 chr1 4049676 4049978 -238614375 - AluSx SINE Alu -10 302 1 2228 112 0 3 chr1 4049980 4050275 -238614078 - AluSx SINE Alu -18 294 1 451 141 0 0 chr1 4050445 4050523 -238613830 - MER53 DNA DNA -1 188 111 1955 151 0 7 chr1 4050529 4050828 -238613525 + AluJb SINE Alu 1 297 -15 222 37 0 0 chr1 4050843 4050870 -238613483 + (CA)n Simple_repeat Simple_repeat 2 28 0 990 171 5 50 chr1 4050927 4051126 -238613227 - AluSg/x SINE Alu -1 309 120 1220 303 85 38 chr1 4052125 4052968 -238611385 - L2 LINE L2 -129 3184 2307 2037 92 100 0 chr1 4053010 4053281 -238611072 - AluSx SINE Alu -14 298 1 375 23 0 0 chr1 4053461 4053505 -238610848 + (TC)n Simple_repeat Simple_repeat 2 45 0 861 214 0 19 chr1 4053505 4053659 -238610694 - FRAM SINE Alu -15 151 1 418 318 8 29 chr1 4053846 4054091 -238610262 - L1MEc LINE L1 -4612 1784 1545 390 366 46 6 chr1 4054119 4054294 -238610059 - L1MEc LINE L1 -4971 1234 1053 2333 115 0 0 chr1 4054334 4054639 -238609714 + AluSx SINE Alu 2 306 -6 2107 137 38 47 chr1 4054640 4054796 -238609557 - MER65A LTR ERV1 0 445 289 2324 100 3 13 chr1 4054796 4055106 -238609247 + AluSx SINE Alu 5 311 -1 2107 137 38 47 chr1 4055106 4055393 -238608960 - MER65A LTR ERV1 -156 289 6 810 241 22 13 chr1 4055408 4055640 -238608713 - L1ME1 LINE L1 -26 6140 5907 626 250 158 45 chr1 4055652 4056056 -238608297 - HAL1 LINE L1 -676 1831 1382 2071 114 4 0 chr1 4056063 4056370 -238607983 - AluSx SINE Alu 0 308 1 2438 82 3 0 chr1 4056552 4056856 -238607497 - AluY SINE Alu -2 309 5 1036 203 31 8 chr1 4057167 4057423 -238606930 + MER44D DNA MER2_type 289 605 0 981 199 38 9 chr1 4057671 4057882 -238606471 - MLT1A2 LTR MaLR 0 374 158 1220 135 0 11 chr1 4057882 4058067 -238606286 - FRAM SINE Alu 0 176 1 1122 82 0 0 chr1 4058081 4058216 -238606137 + AluSq/x SINE Alu 1 135 -178 1766 156 61 10 chr1 4058216 4058511 -238605842 + AluJb SINE Alu 1 310 -2 549 236 159 13 chr1 4062197 4062354 -238601999 - MER5A DNA MER1_type -6 183 4 2967 63 15 5 chr1 4062537 4062934 -238601419 + MLT2A1 LTR ERVL 1 401 -43 243 109 16 31 chr1 4062934 4062998 -238601355 + (TA)n Simple_repeat Simple_repeat 1 63 0 1247 96 0 12 chr1 4063299 4063466 -238600887 + AluSp SINE Alu 149 313 0 633 237 37 93 chr1 4063989 4064053 -238600300 + MIR SINE MIR 47 113 -149 1920 161 3 3 chr1 4064053 4064357 -238599996 - AluJb SINE Alu -2 310 7 633 237 37 93 chr1 4064357 4064507 -238599846 + MIR SINE MIR 113 249 -13 1491 108 45 9 chr1 4064507 4064624 -238599729 + MER30 DNA MER1_type 1 112 -118 2217 119 7 0 chr1 4064624 4064918 -238599435 + AluSx SINE Alu 1 296 -16 1491 108 45 9 chr1 4064918 4065022 -238599331 + MER30 DNA MER1_type 112 230 0 228 35 0 0 chr1 4065217 4065246 -238599107 + (TA)n Simple_repeat Simple_repeat 1 29 0 229 56 111 0 chr1 4065246 4065282 -238599071 + MLT2A1 LTR ERVL 405 444 0 339 302 95 9 chr1 4065387 4065503 -238598850 + MIR3 SINE MIR 12 137 -71 2065 188 26 75 chr1 4065515 4065608 -238598745 + MLT1D LTR MaLR 1 97 -408 2346 116 3 0 chr1 4065608 4065919 -238598434 - AluSx SINE Alu 0 312 1 2065 188 26 75 chr1 4065919 4066356 -238597997 + MLT1D LTR MaLR 97 505 0 1923 128 52 3 chr1 4066400 4066688 -238597665 + AluSq SINE Alu 9 310 -3 396 0 0 0 chr1 4067148 4067192 -238597161 + (CA)n Simple_repeat Simple_repeat 1 44 0 760 189 0 24 chr1 4067204 4067331 -238597022 + FLAM_C SINE Alu 2 125 -18 4564 23 0 0 chr1 4067489 4067987 -238596366 + SVA Other Other 897 1394 0 25 0 0 0 chr1 4067987 4068012 -238596341 + AT_rich Low_complexity Low_complexity 1 25 0 2430 61 0 0 chr1 4068027 4068327 -238596026 + AluY SINE Alu 1 300 0 409 195 34 119 chr1 4068328 4068367 -238595986 - Tigger7 DNA MER2_type -622 111 70 1749 201 3 0 chr1 4068367 4068665 -238595688 - AluJo SINE Alu -13 299 1 409 195 34 119 chr1 4068665 4068743 -238595610 - Tigger7 DNA MER2_type -663 70 4 2200 126 10 0 chr1 4068878 4069187 -238595166 - AluSx SINE Alu 0 312 1 2574 47 0 3 chr1 4069197 4069496 -238594857 - AluY SINE Alu -13 298 1 384 284 13 52 chr1 4069619 4069774 -238594579 + HAL1 LINE L1 39 187 -2320 231 202 111 40 chr1 4069843 4069942 -238594411 + HAL1 LINE L1 349 454 -2053 513 263 145 63 chr1 4070421 4070631 -238593722 - HAL1 LINE L1 -428 2079 1831 1796 172 0 23 chr1 4070631 4070933 -238593420 - AluJo SINE Alu -17 295 1 513 263 145 63 chr1 4070933 4071053 -238593300 - HAL1 LINE L1 -676 1831 1722 2277 82 10 13 chr1 4071882 4072186 -238592167 + AluSq SINE Alu 1 303 -10 1793 150 56 3 chr1 4072211 4072497 -238591856 - AluSx SINE Alu -11 301 1 2424 89 0 3 chr1 4072781 4073085 -238591268 + AluSx SINE Alu 1 303 -9 217 262 49 0 chr1 4073652 4073713 -238590640 - MIR SINE MIR -99 109 46 1549 212 7 13 chr1 4073754 4074056 -238590297 + AluJo SINE Alu 1 300 -12 238 276 67 29 chr1 4074106 4074211 -238590142 + L2 LINE L2 2697 2805 -509 2284 105 0 29 chr1 4074224 4074539 -238589814 - AluSg SINE Alu -4 306 1 198 303 50 67 chr1 4074539 4074658 -238589695 - MIR SINE MIR -113 149 33 1617 118 0 0 chr1 4074864 4075085 -238589268 + AluSg/x SINE Alu 75 295 -15 380 277 8 116 chr1 4075097 4075267 -238589086 + L2 LINE L2 3075 3207 -106 2215 106 3 37 chr1 4075267 4075589 -238588764 + AluSx SINE Alu 1 311 -1 380 277 8 116 chr1 4075589 4075685 -238588668 + L2 LINE L2 3207 3312 -1 938 196 13 70 chr1 4075828 4076058 -238588295 + MER20 DNA MER1_type 1 217 -2 550 122 61 43 chr1 4076124 4076239 -238588114 + MLT1B LTR MaLR 1 117 -273 1205 143 0 6 chr1 4076240 4076415 -238587938 + AluSq SINE Alu 133 306 -7 277 81 0 0 chr1 4076419 4076456 -238587897 + MLT1B LTR MaLR 122 158 -232 2199 92 20 7 chr1 4076456 4076749 -238587604 - AluSx SINE Alu -15 297 1 1979 158 3 3 chr1 4076749 4077052 -238587301 - AluJb SINE Alu -9 303 1 1679 126 28 82 chr1 4077067 4077121 -238587232 - L1MB3 LINE L1 -7 6176 6121 2246 94 3 0 chr1 4077121 4077409 -238586944 - AluSp SINE Alu -19 294 6 1679 126 28 82 chr1 4077409 4077710 -238586643 - L1MB3 LINE L1 -62 6121 5840 2309 89 7 0 chr1 4077741 4078032 -238586321 + AluSx SINE Alu 3 295 -17 1892 164 0 19 chr1 4078055 4078366 -238585987 + AluJo SINE Alu 1 305 -7 2181 117 0 7 chr1 4079626 4079925 -238584428 + AluSx SINE Alu 1 297 -15 3449 130 29 4 chr1 4079983 4080538 -238583815 + LTR24B LTR ERV1 1 569 -7 528 134 67 148 chr1 4080693 4080842 -238583511 + THE1C LTR MaLR 1 137 -238 348 154 0 0 chr1 4080828 4080880 -238583473 - Alu SINE Alu -13 289 238 * 368 125 16 0 chr1 4080882 4080946 -238583407 + CT-rich Low_complexity Low_complexity 3 67 0 334 161 0 0 chr1 4080952 4081008 -238583345 - Alu SINE Alu 0 302 247 * 1414 135 38 4 chr1 4081005 4081242 -238583111 + THE1C LTR MaLR 131 375 0 649 200 4 109 chr1 4081368 4081598 -238582755 - L1MB7 LINE L1 -11 6173 5968 2217 96 0 4 chr1 4081699 4081979 -238582374 - AluSg SINE Alu -31 279 1 1080 71 0 57 chr1 4081989 4082130 -238582223 - AluSq/x SINE Alu -180 133 1 1971 141 13 13 chr1 4082220 4082526 -238581827 - AluJo SINE Alu -4 308 3 28 0 0 0 chr1 4083126 4083154 -238581199 + AT_rich Low_complexity Low_complexity 1 28 0 866 175 0 138 chr1 4083191 4083298 -238581055 - AluSx SINE Alu -100 212 156 2357 112 0 0 chr1 4083298 4083610 -238580743 - AluSx SINE Alu 0 312 1 866 175 0 138 chr1 4083610 4083748 -238580605 - AluSx SINE Alu -156 156 1 2071 71 26 15 chr1 4084217 4084485 -238579868 - AluSg SINE Alu -5 305 35 1230 217 110 35 chr1 4084538 4084967 -238579386 + MLT1C LTR MaLR 6 466 -1 2515 112 117 5 chr1 4085215 4085600 -238578753 - MSTA LTR MaLR 0 428 1 382 264 91 0 chr1 4086439 4086560 -238577793 + MER94 DNA DNA 3 134 0 2159 114 3 3 chr1 4086562 4086859 -238577494 - AluSx SINE Alu -15 297 1 612 194 8 8 chr1 4086941 4087070 -238577283 + L1MB3 LINE L1 6055 6183 0 1073 269 108 53 chr1 4087080 4087664 -238576689 + L2 LINE L2 2359 2974 -340 328 232 58 14 chr1 4087796 4087865 -238576488 - L1MC4 LINE L1 -1339 6703 6632 1457 138 29 72 chr1 4087871 4088147 -238576206 - AluJb SINE Alu -44 268 5 348 149 0 15 chr1 4088152 4088219 -238576134 + MLT1B LTR MaLR 324 389 -1 34 24 0 0 chr1 4088740 4088781 -238575572 + AT_rich Low_complexity Low_complexity 1 41 0 246 185 56 19 chr1 4090025 4090133 -238574220 + (TA)n Simple_repeat Simple_repeat 1 112 0 900 104 49 0 chr1 4090177 4090321 -238574032 + MLT1B LTR MaLR 29 179 -211 1930 152 7 0 chr1 4090321 4090630 -238573723 + AluJb SINE Alu 1 311 -1 2464 58 0 3 chr1 4091155 4091523 -238572830 - AluY SINE Alu 0 311 1 939 170 0 0 chr1 4091835 4091976 -238572377 + FRAM SINE Alu 4 144 -32 270 0 0 0 chr1 4091981 4092011 -238572342 + (CA)n Simple_repeat Simple_repeat 1 30 0 1075 105 0 0 chr1 4092184 4092317 -238572036 + AluSg SINE Alu 1 133 -177 1598 115 0 25 chr1 4092317 4092552 -238571801 + AluSx SINE Alu 1 229 -83 1109 192 28 17 chr1 4092708 4092999 -238571354 - L1M4 LINE L1 -845 5301 5008 524 131 20 20 chr1 4093004 4093103 -238571250 + LTR24B LTR ERV1 38 136 -440 386 160 117 0 chr1 4093103 4093197 -238571156 - L1M4 LINE L1 -1547 4599 4495 1887 156 0 22 chr1 4093209 4093523 -238570830 - AluJo SINE Alu -1 311 5 2344 109 0 0 chr1 4093533 4093845 -238570508 - AluSx SINE Alu 0 312 1 961 240 81 3 chr1 4093896 4094134 -238570219 - L1M4 LINE L1 -2378 3768 3499 390 21 0 0 chr1 4094134 4094181 -238570172 + (TG)n Simple_repeat Simple_repeat 2 48 0 961 240 81 3 chr1 4094181 4094250 -238570103 - L1M4 LINE L1 -2647 3499 3437 736 129 0 0 chr1 4094290 4094391 -238569962 - AluSg/x SINE Alu -23 286 186 1682 107 0 21 chr1 4094391 4094625 -238569728 + AluSx SINE Alu 1 229 -83 416 182 0 0 chr1 4094660 4094726 -238569627 - AluJ/FLAM SINE Alu -234 78 13 2659 32 3 13 chr1 4095667 4095981 -238568372 + AluY SINE Alu 1 311 0 1117 116 15 30 chr1 4096367 4096565 -238567788 - L1PA16 LINE L1 -1 6165 5971 1562 154 65 31 chr1 4096594 4096886 -238567467 - AluJo SINE Alu -10 302 1 1020 112 0 87 chr1 4096886 4097054 -238567299 - L1PA16 LINE L1 -182 5984 5834 1619 116 39 4 chr1 4097054 4097287 -238567066 + AluSx SINE Alu 58 298 -14 1020 112 0 87 chr1 4097287 4097314 -238567039 - L1PA16 LINE L1 -332 5834 5806 2315 105 3 10 chr1 4097408 4097722 -238566631 - AluSx SINE Alu 0 312 1 322 223 64 0 chr1 4098345 4098439 -238565914 + MLT1L LTR MaLR 503 602 -13 370 185 23 108 chr1 4098567 4098618 -238565735 + MER45A DNA AcHobo 58 112 -1469 1744 162 7 10 chr1 4098618 4098908 -238565445 - AluJo SINE Alu -12 300 12 370 185 23 108 chr1 4098908 4098986 -238565367 + MER45A DNA AcHobo 112 176 -2 942 130 0 0 chr1 4099342 4099496 -238564857 + (CA)n Simple_repeat Simple_repeat 1 154 0 1918 124 47 0 chr1 4099539 4099813 -238564540 + AluSx SINE Alu 1 287 -25 213 307 88 44 chr1 4099846 4099983 -238564370 + L2 LINE L2 3068 3210 -62 1231 180 12 16 chr1 4100393 4100643 -238563710 - AluJo SINE Alu -14 298 50 1972 100 3 3 chr1 4100748 4101047 -238563306 - AluSx SINE Alu -13 299 1 710 199 22 7 chr1 4101386 4101522 -238562831 + AluJo SINE Alu 2 139 -173 1506 183 0 24 chr1 4101523 4101652 -238562701 + AluJo SINE Alu 11 142 -170 2575 36 0 0 chr1 4101652 4101953 -238562400 + AluY SINE Alu 1 301 -10 1506 183 0 24 chr1 4101953 4102118 -238562235 + AluJo SINE Alu 142 298 -14 2235 94 3 0 chr1 4102206 4102504 -238561849 + AluSx SINE Alu 1 299 -13 1616 151 6 58 chr1 4102692 4102835 -238561518 + AluJb SINE Alu 1 124 -188 1808 134 4 7 chr1 4102835 4103143 -238561210 + AluSx SINE Alu 8 314 0 1616 151 6 58 chr1 4103143 4103308 -238561045 + AluJb SINE Alu 124 296 -16 2407 75 3 0 chr1 4103310 4103618 -238560735 + AluSp SINE Alu 1 309 -4 806 154 8 0 chr1 4104042 4104172 -238560181 - FLAM_C SINE Alu -8 135 5 2161 104 3 3 chr1 4104186 4104485 -238559868 - AluSx SINE Alu -13 299 1 472 158 0 13 chr1 4104485 4104561 -238559792 - MER5A DNA MER1_type -114 75 1 2221 81 0 26 chr1 4105085 4105393 -238558960 - AluY SINE Alu -11 300 1 483 153 31 61 chr1 4105393 4105491 -238558862 - AluJo/FLAM SINE Alu -185 127 33 1806 147 13 7 chr1 4105776 4106083 -238558270 - AluJb SINE Alu -3 309 1 3862 171 12 34 chr1 4106180 4106466 -238557887 - L1MB3 LINE L1 -8 6175 5884 1630 146 56 3 chr1 4106466 4106754 -238557599 - AluSq SINE Alu -9 304 2 3862 171 12 34 chr1 4106754 4107166 -238557187 - L1MB3 LINE L1 -299 5884 5491 1822 109 64 7 chr1 4107166 4107449 -238556904 - AluSx SINE Alu -13 299 1 3862 171 12 34 chr1 4107449 4107496 -238556857 - L1MB3 LINE L1 -692 5491 5445 490 290 6 33 chr1 4107914 4108006 -238556347 - MIR SINE MIR -71 191 105 2296 119 129 5 chr1 4108006 4108385 -238555968 + MSTA LTR MaLR 1 426 -2 490 290 6 33 chr1 4108385 4108475 -238555878 - MIR SINE MIR -157 105 14 238 274 65 65 chr1 4108548 4108701 -238555652 + L2 LINE L2 3161 3313 0 2058 119 0 0 chr1 4109072 4109365 -238554988 - AluSx SINE Alu -19 293 1 2078 96 27 7 chr1 4109376 4109668 -238554685 - AluSx SINE Alu -14 298 1 1602 186 0 38 chr1 4109899 4110216 -238554137 - AluJo SINE Alu -7 305 1 207 0 0 0 chr1 4110331 4110354 -238553999 + (T)n Simple_repeat Simple_repeat 1 23 0 228 315 95 0 chr1 4110718 4110827 -238553526 - MIR SINE MIR -29 179 59 2035 113 7 3 chr1 4111089 4111399 -238552954 + AluSq SINE Alu 1 311 -2 735 192 0 0 chr1 4111416 4111541 -238552812 + MLT1B LTR MaLR 266 390 0 31 44 0 0 chr1 4111560 4111605 -238552748 + AT_rich Low_complexity Low_complexity 1 45 0 905 171 0 0 chr1 4111605 4111757 -238552596 - FRAM SINE Alu -23 153 2 302 268 107 0 chr1 4111832 4111944 -238552409 - L2 LINE L2 0 3313 3190 2002 96 0 31 chr1 4112057 4112187 -238552166 + AluSx SINE Alu 5 137 -170 2610 32 0 10 chr1 4112187 4112501 -238551852 + AluY SINE Alu 1 311 0 2002 96 0 31 chr1 4112501 4112682 -238551671 + AluSx SINE Alu 137 307 0 1015 144 6 18 chr1 4112694 4112861 -238551492 + FRAM SINE Alu 1 165 -1 681 167 17 8 chr1 4113483 4113603 -238550750 + MER101 LTR ERV1 354 474 0 * 870 203 86 48 chr1 4113603 4113912 -238550441 + Charlie1 DNA MER1_type 175 495 -2266 628 119 32 63 chr1 4113882 4114008 -238550345 + Charlie1 DNA MER1_type 2618 2739 -22 * 278 170 38 0 chr1 4114077 4114130 -238550223 + Charlie1 DNA MER1_type 2707 2761 0 * 986 266 110 30 chr1 4114130 4114492 -238549861 - MLT1I LTR MaLR -16 393 3 2454 53 0 3 chr1 4115109 4115410 -238548943 - AluY SINE Alu -11 300 1 462 256 64 8 chr1 4116627 4116752 -238547601 - L2 LINE L2 -4 3268 3137 225 377 91 32 chr1 4116794 4117168 -238547185 - L2 LINE L2 -502 2812 2417 1895 84 55 4 chr1 4117269 4117543 -238546810 + AluSp SINE Alu 11 298 -15 312 294 69 0 chr1 4117723 4117825 -238546528 - MIR SINE MIR -66 196 88 288 311 198 6 chr1 4118087 4118254 -238546099 - MIR SINE MIR -43 219 21 1655 59 0 0 chr1 4118398 4118600 -238545753 + AluY SINE Alu 3 204 -107 2294 93 0 0 chr1 4120363 4120665 -238543688 - AluSp SINE Alu -11 302 1 1901 126 7 27 chr1 4120667 4120968 -238543385 - AluSx SINE Alu -17 295 1 2045 99 0 11 chr1 4121154 4121436 -238542917 - AluSg SINE Alu -31 279 1 23 0 0 0 chr1 4121436 4121459 -238542894 + AT_rich Low_complexity Low_complexity 1 23 0 612 198 0 0 chr1 4121472 4121573 -238542780 - FRAM SINE Alu -24 152 52 843 157 119 27 chr1 4121573 4121589 -238542764 + LTR36 LTR ERV1 3 16 -595 2027 119 13 3 chr1 4121589 4121892 -238542461 - AluSx SINE Alu -6 306 1 843 157 119 27 chr1 4121892 4122060 -238542293 + LTR36 LTR ERV1 16 204 -407 908 234 172 7 chr1 4122094 4122367 -238541986 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 4122418 4122439 -238541914 + AT_rich Low_complexity Low_complexity 1 21 0 2296 64 0 32 chr1 4122439 4122751 -238541602 + AluY SINE Alu 1 302 -9 1209 81 12 0 chr1 4122753 4122914 -238541439 + AluY SINE Alu 135 297 -14 739 142 0 63 chr1 4122914 4123041 -238541312 - AluJo/FLAM SINE Alu -183 129 11 187 298 35 114 chr1 4123101 4123260 -238541093 - MIR SINE MIR 0 262 129 2060 116 0 20 chr1 4123260 4123563 -238540790 + AluSg SINE Alu 1 297 -13 187 298 35 114 chr1 4123563 4123658 -238540695 - MIR SINE MIR -133 129 28 239 336 79 14 chr1 4123691 4123816 -238540537 - MIR SINE MIR -61 147 33 1758 123 38 131 chr1 4125063 4125430 -238538923 - MER1B DNA MER1_type -4 333 1 2199 43 54 0 chr1 4125548 4125827 -238538526 - AluY SINE Alu -17 294 1 1633 115 4 8 chr1 4126398 4126642 -238537711 + AluSq SINE Alu 1 243 -70 241 200 40 0 chr1 4126644 4126694 -238537659 + L2 LINE L2 2984 3035 -278 1695 157 23 7 chr1 4126694 4126999 -238537354 - AluJo SINE Alu -2 310 1 864 173 19 12 chr1 4127017 4127179 -238537174 - FRAM SINE Alu -13 163 1 639 246 68 85 chr1 4127179 4127242 -238537111 + L2 LINE L2 3020 3083 -230 1797 161 0 3 chr1 4127242 4127541 -238536812 + AluJo SINE Alu 1 298 -14 639 246 68 85 chr1 4127541 4127770 -238536583 + L2 LINE L2 3083 3307 -6 486 183 74 147 chr1 4127918 4128252 -238536101 + LTR37B LTR ERV1 118 459 -9 2139 84 7 0 chr1 4128261 4128547 -238535806 + AluSg SINE Alu 1 288 -22 1100 238 52 58 chr1 4128673 4129073 -238535280 + L2 LINE L2 2192 2589 -725 801 142 6 119 chr1 4129082 4129258 -238535095 + MER58A DNA MER1_type 47 202 -22 1676 176 97 54 chr1 4129267 4129380 -238534973 + MLT1D LTR MaLR 1 108 -397 1749 156 0 0 chr1 4129380 4129655 -238534698 + AluSx SINE Alu 1 275 -37 1676 176 97 54 chr1 4129655 4130024 -238534329 + MLT1D LTR MaLR 108 504 -1 961 246 120 32 chr1 4130024 4130417 -238533936 + L2 LINE L2 2578 2935 -378 2315 90 3 3 chr1 4130417 4130729 -238533624 + AluSx SINE Alu 1 312 0 961 246 120 32 chr1 4130729 4130949 -238533404 + L2 LINE L2 2935 3313 0 349 291 98 67 chr1 4130990 4131207 -238533146 - L1MC4a LINE L1 -1754 6054 5826 1641 128 26 49 chr1 4131207 4131511 -238532842 - AluSx SINE Alu -15 297 1 349 291 98 67 chr1 4131511 4131547 -238532806 - L1MC4a LINE L1 -1982 5826 5793 2030 104 0 35 chr1 4132156 4132474 -238531879 + AluSc SINE Alu 2 308 -1 1877 149 3 3 chr1 4132958 4133260 -238531093 - AluSx SINE Alu -10 302 1 440 110 41 0 chr1 4133501 4133574 -238530779 + L1MD1 LINE L1 6153 6228 -14 2055 111 3 3 chr1 4133720 4134017 -238530336 - AluSg SINE Alu -13 297 1 262 226 0 0 chr1 4134488 4134541 -238529812 - Charlie1b DNA MER1_type 0 523 471 2094 83 4 0 chr1 4134549 4134825 -238529528 + AluSg SINE Alu 1 277 -33 1044 168 96 0 chr1 4134827 4135035 -238529318 + AluJb SINE Alu 81 308 -4 1067 188 84 81 chr1 4135035 4135300 -238529053 - Charlie1b DNA MER1_type -2410 351 83 1686 168 7 0 chr1 4135300 4135585 -238528768 + AluJo SINE Alu 1 287 -25 1067 188 84 81 chr1 4135585 4135664 -238528689 - Charlie1b DNA MER1_type -2678 83 6 2190 93 3 0 chr1 4135879 4136170 -238528183 + AluSp SINE Alu 1 292 -21 1925 144 0 3 chr1 4136289 4136587 -238527766 - AluSq SINE Alu -16 297 1 995 261 24 31 chr1 4136706 4137046 -238527307 - L1MC4a LINE L1 -315 5806 5480 22 35 0 0 chr1 4137930 4137959 -238526394 + GC_rich Low_complexity Low_complexity 1 29 0 273 57 0 0 chr1 4141255 4141290 -238523063 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 254 235 0 0 chr1 4142775 4142826 -238521527 - L2 LINE L2 -2 3270 3220 2057 105 3 59 chr1 4142901 4143225 -238521128 - AluSx SINE Alu -6 306 1 306 0 0 0 chr1 4143472 4143506 -238520847 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr1 4144209 4144232 -238520121 + AT_rich Low_complexity Low_complexity 1 23 0 1931 109 48 14 chr1 4145060 4145354 -238518999 - AluSx SINE Alu -8 304 1 207 125 0 0 chr1 4147977 4148017 -238516336 + (T)n Simple_repeat Simple_repeat 1 40 0 1564 181 0 26 chr1 4148277 4148587 -238515766 - AluJo SINE Alu -10 302 1 1802 136 26 13 chr1 4149222 4149524 -238514829 - AluJb SINE Alu 0 312 7 1680 167 39 0 chr1 4150172 4150453 -238513900 - AluJb SINE Alu -20 292 1 2217 108 0 22 chr1 4150461 4150776 -238513577 - AluSx SINE Alu -1 311 4 33 43 0 0 chr1 4151009 4151056 -238513297 + AT_rich Low_complexity Low_complexity 1 47 0 2052 117 31 0 chr1 4151089 4151380 -238512973 - AluSq SINE Alu -13 300 1 955 133 106 0 chr1 4151526 4151677 -238512676 - AluY SINE Alu -12 299 133 2655 33 0 0 chr1 4151677 4151980 -238512373 - AluYb8 SINE Alu -7 311 9 27 62 0 0 chr1 4152130 4152178 -238512175 + AT_rich Low_complexity Low_complexity 1 48 0 1603 166 32 11 chr1 4152178 4152461 -238511892 - AluJo SINE Alu -23 289 1 221 286 0 32 chr1 4152710 4152773 -238511580 + L3 LINE CR1 1496 1556 -21 1017 132 86 17 chr1 4152793 4152967 -238511386 - MER44D DNA MER2_type -153 456 1 1941 143 0 16 chr1 4153215 4153522 -238510831 + AluJo SINE Alu 1 302 -10 615 159 62 0 chr1 4154661 4154774 -238509579 + L1MB3 LINE L1 6064 6183 0 1813 146 0 45 chr1 4155833 4156141 -238508212 - AluJb SINE Alu -18 294 1 1571 175 0 92 chr1 4156797 4156993 -238507360 - AluJo SINE Alu -5 307 153 1971 91 18 14 chr1 4156993 4157269 -238507084 + AluSq SINE Alu 1 277 -36 1571 175 0 92 chr1 4157269 4157410 -238506943 - AluJo SINE Alu -159 153 1 3403 199 15 71 chr1 4157432 4157830 -238506523 - L1ME1 LINE L1 -9 6157 5738 824 120 17 8 chr1 4157830 4157947 -238506406 - FLAM_C SINE Alu -15 118 1 3403 199 15 71 chr1 4157947 4158549 -238505804 - L1ME1 LINE L1 -428 5738 5224 3267 180 7 25 chr1 4158572 4158605 -238505748 - L1ME1 LINE L1 -922 5224 5192 1489 199 7 20 chr1 4158605 4158902 -238505451 - AluJb SINE Alu -19 293 1 3267 180 7 25 chr1 4158902 4159545 -238504808 - L1ME1 LINE L1 -954 5192 4560 21 36 0 0 chr1 4159922 4159950 -238504403 + AT_rich Low_complexity Low_complexity 1 28 0 300 202 394 0 chr1 4160034 4160133 -238504220 - L2 LINE L2 -1 3271 3134 2126 71 0 11 chr1 4160565 4160831 -238503522 + AluSc SINE Alu 35 297 -12 218 296 156 15 chr1 4161059 4161194 -238503159 - L2 LINE L2 -213 3059 2906 207 0 0 0 chr1 4161821 4161844 -238502509 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 220 242 208 17 chr1 4161962 4162082 -238502271 - L2 LINE L2 -804 2510 2368 2461 99 0 0 chr1 4162108 4162420 -238501933 - AluSq SINE Alu -1 312 1 315 184 19 48 chr1 4162546 4162649 -238501704 - LTR33 LTR ERVL -403 118 19 202 340 98 12 chr1 4162740 4162984 -238501369 - L2 LINE L2 -1138 2176 1912 1412 246 128 33 chr1 4163136 4163618 -238500735 - MLT1E LTR MaLR 0 593 53 2373 66 7 0 chr1 4163618 4163907 -238500446 + AluY SINE Alu 1 291 -20 1412 246 128 33 chr1 4163907 4163965 -238500388 - MLT1E LTR MaLR -540 53 2 198 245 38 0 chr1 4164281 4164334 -238500019 + MIR SINE MIR 158 212 -50 203 301 119 42 chr1 4165349 4165492 -238498861 + MIR SINE MIR 59 212 -50 212 152 76 0 chr1 4166430 4166496 -238497857 + (TTAA)n Simple_repeat Simple_repeat 3 73 0 1044 121 0 36 chr1 4166706 4166872 -238497481 - FRAM SINE Alu -9 167 8 216 326 22 33 chr1 4167078 4167170 -238497183 - L2 LINE L2 0 3313 3223 646 272 163 20 chr1 4167363 4167712 -238496641 + MLT1J2 LTR MaLR 1 399 -51 1893 165 3 0 chr1 4168300 4168597 -238495756 - AluJo SINE Alu -14 298 1 424 224 51 0 chr1 4168837 4168935 -238495418 + MER5A DNA MER1_type 4 106 -83 190 318 101 47 chr1 4169009 4169073 -238495280 - MIR3 SINE MIR -63 145 86 802 184 133 6 chr1 4169073 4169231 -238495122 - MER5B DNA MER1_type 0 178 1 190 318 101 47 chr1 4169231 4169295 -238495058 - MIR3 SINE MIR -122 86 10 561 247 93 16 chr1 4169351 4169545 -238494808 + L2 LINE L2 3104 3312 -1 953 209 6 0 chr1 4170732 4170890 -238493463 - FRAM SINE Alu -7 159 1 2244 120 0 0 chr1 4171151 4171460 -238492893 + AluSx SINE Alu 4 312 0 276 209 189 3 chr1 4171612 4171714 -238492639 - MIR SINE MIR -21 187 62 25 0 0 0 chr1 4171719 4171744 -238492609 + AT_rich Low_complexity Low_complexity 1 25 0 1733 177 0 7 chr1 4171744 4172026 -238492327 - AluJb SINE Alu -24 288 9 877 190 0 39 chr1 4172031 4172210 -238492143 - FRAM SINE Alu -3 173 2 1712 213 79 14 chr1 4172804 4173236 -238491117 - L1MC4 LINE L1 -149 7893 7434 303 195 149 15 chr1 4173418 4173507 -238490846 + MIR SINE MIR 34 118 -90 541 239 114 22 chr1 4173698 4173882 -238490471 + MIR SINE MIR 52 252 -10 405 39 0 0 chr1 4175888 4175939 -238488414 + (CA)n Simple_repeat Simple_repeat 1 51 0 408 262 112 15 chr1 4177015 4177164 -238487189 - MIR3 SINE MIR -27 181 11 242 201 69 90 chr1 4179990 4180134 -238484219 - Charlie7 DNA MER1_type -43 2569 2429 2490 82 0 0 chr1 4181380 4181683 -238482670 - AluSc SINE Alu -6 303 1 200 336 119 0 chr1 4181688 4181822 -238482531 - MIR SINE MIR -8 254 105 2094 128 0 19 chr1 4181984 4182296 -238482057 - AluSx SINE Alu -6 306 1 637 302 36 18 chr1 4182633 4182858 -238481495 - MIR SINE MIR -6 256 28 2386 75 0 25 chr1 4183118 4183437 -238480916 - AluY SINE Alu 0 311 1 2325 91 3 0 chr1 4183440 4183736 -238480617 - AluSx SINE Alu -15 297 1 575 183 15 44 chr1 4183744 4183881 -238480472 - L1ME1 LINE L1 -5 6161 6029 2450 87 0 0 chr1 4183900 4184211 -238480142 - AluY SINE Alu 0 311 1 23 0 0 0 chr1 4185122 4185145 -238479208 + AT_rich Low_complexity Low_complexity 1 23 0 1754 169 30 7 chr1 4185173 4185468 -238478885 - AluJb SINE Alu -8 304 3 207 0 0 0 chr1 4186113 4186136 -238478217 + (CAG)n Simple_repeat Simple_repeat 1 23 0 285 268 49 12 chr1 4186350 4186432 -238477921 + L2 LINE L2 3228 3312 -1 294 292 73 0 chr1 4187014 4187110 -238477243 + MIR SINE MIR 20 122 -86 23 33 0 0 chr1 4187235 4187265 -238477088 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr1 4187314 4187340 -238477013 + AT_rich Low_complexity Low_complexity 1 26 0 185 95 0 48 chr1 4187340 4187382 -238476971 + (TTTTTA)n Simple_repeat Simple_repeat 1 40 0 1744 154 10 20 chr1 4187731 4188024 -238476329 - AluJo SINE Alu -14 298 9 510 138 0 12 chr1 4188035 4188115 -238476238 - L1MB7 LINE L1 -66 6118 6040 867 146 7 0 chr1 4188566 4188710 -238475643 - MER5A DNA MER1_type -1 188 44 273 210 0 0 chr1 4189132 4189194 -238475159 + (CCTA)n Simple_repeat Simple_repeat 2 63 0 273 196 0 0 chr1 4189667 4189723 -238474630 + (TG)n Simple_repeat Simple_repeat 1 56 0 2184 64 13 60 chr1 4190034 4190348 -238474005 - AluY SINE Alu -11 300 2 21 0 0 0 chr1 4190778 4190799 -238473554 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 4190861 4190896 -238473457 + AT_rich Low_complexity Low_complexity 1 35 0 288 264 0 66 chr1 4191004 4191110 -238473243 + L2 LINE L2 3127 3225 -88 1286 164 56 0 chr1 4191867 4192135 -238472218 - AluJo SINE Alu -29 283 1 2305 95 10 3 chr1 4192179 4192485 -238471868 + AluSg SINE Alu 1 308 -2 1335 255 182 29 chr1 4192518 4192996 -238471357 - L2 LINE L2 0 3313 2910 2316 82 7 0 chr1 4192996 4193287 -238471066 + AluSq SINE Alu 1 293 -20 1335 255 182 29 chr1 4193287 4193945 -238470408 - L2 LINE L2 -403 2910 1991 1918 210 30 48 chr1 4193962 4194461 -238469892 - MLT1D LTR MaLR -15 490 1 441 338 69 9 chr1 4194471 4194702 -238469651 - L2 LINE L2 -1343 1971 1727 620 244 29 17 chr1 4195464 4195636 -238468717 + MER5B DNA MER1_type 3 176 -2 2289 104 0 13 chr1 4195716 4196032 -238468321 + AluSx SINE Alu 1 312 0 185 298 60 36 chr1 4196350 4196434 -238467919 - L3 LINE CR1 -28 1549 1464 1494 121 0 0 chr1 4196658 4196857 -238467496 - AluSx SINE Alu -113 199 1 937 239 99 16 chr1 4196919 4197457 -238466896 + L1ME3A LINE L1 5437 6165 -2 1678 157 3 59 chr1 4197468 4197792 -238466561 + AluJb SINE Alu 1 306 -6 272 242 0 55 chr1 4197803 4197894 -238466459 + L1ME LINE L1 5779 5864 -306 2085 265 91 12 chr1 4197978 4198540 -238465813 - MLT2E LTR ERVL -2 626 21 596 130 100 0 chr1 4198552 4198652 -238465701 + L1MB7 LINE L1 6069 6178 -6 2243 127 38 0 chr1 4198904 4199243 -238465110 - THE1B LTR MaLR 0 364 13 1565 136 0 8 chr1 4199344 4199580 -238464773 + AluSg/x SINE Alu 65 298 -14 1912 206 24 12 chr1 4199603 4200026 -238464327 + L1MB8 LINE L1 5751 6178 0 285 268 0 0 chr1 4200859 4200997 -238463356 + (CA)n Simple_repeat Simple_repeat 2 139 0 228 67 0 0 chr1 4203385 4203415 -238460938 + (T)n Simple_repeat Simple_repeat 1 30 0 2196 62 72 10 chr1 4203799 4204090 -238460263 + AluSg SINE Alu 1 309 -1 517 339 190 10 chr1 4206041 4206792 -238457561 + L2 LINE L2 2406 3270 -43 180 179 60 60 chr1 4207944 4208028 -238456325 - L2 LINE L2 -294 2978 2895 2438 89 0 0 chr1 4209072 4209376 -238454977 + AluY SINE Alu 1 304 -7 369 109 0 0 chr1 4210338 4210393 -238453960 + (CA)n Simple_repeat Simple_repeat 2 56 0 2713 253 71 66 chr1 4211305 4212653 -238451700 + L1ME1 LINE L1 4200 5550 -616 2072 120 17 10 chr1 4212653 4212931 -238451422 + AluSx SINE Alu 2 284 -28 306 0 0 0 chr1 4212931 4212965 -238451388 + (CA)n Simple_repeat Simple_repeat 1 34 0 2072 120 17 10 chr1 4212965 4212987 -238451366 + AluSx SINE Alu 284 304 -8 2713 253 71 66 chr1 4212987 4213568 -238450785 + L1ME1 LINE L1 5550 6127 -39 2602 213 129 14 chr1 4213558 4214301 -238450052 + L1ME2 LINE L1 5335 6163 -1 * 217 350 63 14 chr1 4214780 4214923 -238449430 + L2 LINE L2 2154 2303 -1011 310 307 161 37 chr1 4214995 4215425 -238448928 + L2 LINE L2 1796 2278 -1036 1753 133 3 117 chr1 4215432 4215784 -238448569 - AluJo SINE Alu 0 312 1 2315 121 0 3 chr1 4216073 4216386 -238447967 - AluSq SINE Alu -1 312 1 202 186 0 34 chr1 4222858 4222917 -238441436 + CT-rich Low_complexity Low_complexity 3 59 0 224 269 76 48 chr1 4224433 4224482 -238439871 + MIR3 SINE MIR 35 81 -127 2572 98 0 14 chr1 4224482 4224851 -238439502 - THE1B LTR MaLR 0 364 1 224 269 76 48 chr1 4224851 4224966 -238439387 + MIR3 SINE MIR 81 208 0 39 22 0 0 chr1 4226676 4226722 -238437631 + AT_rich Low_complexity Low_complexity 1 46 0 2291 104 0 0 chr1 4226735 4227024 -238437329 - AluSx SINE Alu -23 289 1 3189 105 2 25 chr1 4227024 4227538 -238436815 - L1MA2 LINE L1 -25 6279 5776 390 348 12 6 chr1 4227571 4227732 -238436621 + MIR SINE MIR 53 214 -48 2229 97 0 32 chr1 4227736 4228044 -238436309 + AluSc SINE Alu 1 298 -11 2744 82 0 0 chr1 4228254 4228618 -238435735 - THE1B LTR MaLR 0 364 1 1614 226 18 28 chr1 4229352 4229746 -238434607 + L1MB8 LINE L1 5784 6173 -5 181 330 17 51 chr1 4230185 4230303 -238434050 + MIR SINE MIR 34 147 -115 2845 186 3 42 chr1 4231697 4232224 -238432129 + L1MB1 LINE L1 5602 6105 -63 2309 131 0 0 chr1 4232224 4232537 -238431816 + AluSq SINE Alu 1 313 0 2845 186 3 42 chr1 4232537 4232599 -238431754 + L1MB1 LINE L1 6105 6168 0 204 299 51 34 chr1 4232789 4232906 -238431447 + L2 LINE L2 3150 3268 -4 25 65 0 0 chr1 4235205 4235251 -238429102 + AT_rich Low_complexity Low_complexity 1 46 0 583 266 57 11 chr1 4235254 4235431 -238428922 + L1MD2 LINE L1 5948 6132 -227 263 291 74 20 chr1 4235441 4235589 -238428764 + L1MD1 LINE L1 6079 6234 -8 191 167 241 0 chr1 4235731 4235785 -238428568 - MIR SINE MIR -89 173 107 359 250 205 0 chr1 4236796 4236908 -238427445 + L2 LINE L2 3179 3313 0 2306 119 3 0 chr1 4238114 4238416 -238425937 - AluSx SINE Alu -9 303 1 2097 127 10 0 chr1 4239549 4239849 -238424504 - AluSq SINE Alu -10 303 1 208 342 43 17 chr1 4242069 4242186 -238422167 - L2 LINE L2 -10 3262 3143 476 309 62 65 chr1 4242225 4242643 -238421710 - L2 LINE L2 -1 3271 2855 413 305 224 25 chr1 4242836 4243197 -238421156 - L2 LINE L2 -652 2662 2230 2274 108 28 19 chr1 4245060 4245421 -238418932 - THE1B LTR MaLR 0 364 1 10784 103 9 15 chr1 4245421 4247010 -238417343 - THE1B-int LTR MaLR 0 1580 1 2301 107 19 25 chr1 4247010 4247376 -238416977 - THE1B LTR MaLR 0 364 1 204 235 73 0 chr1 4247665 4247733 -238416620 - MIR SINE MIR -117 145 73 865 261 154 30 chr1 4247743 4248244 -238416109 - MLT1F1 LTR MaLR 0 567 5 505 290 14 0 chr1 4249558 4249696 -238414657 - L2 LINE L2 -1 3312 3173 214 319 139 28 chr1 4251458 4251602 -238412751 + MIR SINE MIR 67 226 -36 997 177 19 18 chr1 4251735 4252157 -238412196 + CT-rich Low_complexity Low_complexity 1 600 0 1825 175 0 28 chr1 4252164 4252484 -238411869 - AluJo SINE Alu -1 311 1 26 0 0 0 chr1 4252490 4252516 -238411837 + AT_rich Low_complexity Low_complexity 1 26 0 1379 176 59 0 chr1 4252516 4252637 -238411716 - AluJo SINE Alu -59 253 141 186 43 0 0 chr1 4252637 4252660 -238411693 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1379 176 59 0 chr1 4252660 4252777 -238411576 - AluJo SINE Alu -171 141 1 2474 211 54 6 chr1 4252777 4253294 -238411059 - MER119 DNA MER1_type -40 543 2 314 315 56 15 chr1 4254057 4254254 -238410099 + L2 LINE L2 2863 3067 -246 248 240 0 125 chr1 4254296 4254400 -238409953 + L2 LINE L2 3195 3285 -28 24 0 0 0 chr1 4254445 4254469 -238409884 + AT_rich Low_complexity Low_complexity 1 24 0 2203 120 0 22 chr1 4254609 4254790 -238409563 - AluSg SINE Alu 0 310 127 213 65 0 0 chr1 4254790 4254821 -238409532 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2326 60 3 3 chr1 4254821 4255104 -238409249 - AluY SINE Alu -28 283 1 2203 120 0 22 chr1 4255104 4255238 -238409115 - AluSg SINE Alu -181 129 1 180 97 0 0 chr1 4255533 4255564 -238408789 + L2 LINE L2 2929 2959 -313 279 329 0 0 chr1 4257033 4257118 -238407235 - MIR SINE MIR -86 176 92 589 164 136 21 chr1 4257456 4257471 -238406882 - L1MA10 LINE L1 -1 6333 6319 1198 213 79 30 chr1 4257471 4257799 -238406554 - L1ME1 LINE L1 -5 6161 5818 621 215 7 56 chr1 4258131 4258275 -238406078 - MER31B LTR ERV1 -329 137 1 1563 138 0 4 chr1 4258458 4258697 -238405656 - AluSx SINE Alu -14 298 61 180 224 90 15 chr1 4258912 4258979 -238405374 - L2 LINE L2 -453 2861 2790 1816 145 24 27 chr1 4258991 4259160 -238405193 - AluSx SINE Alu -12 300 131 2125 106 3 33 chr1 4259160 4259463 -238404890 - AluSg SINE Alu -16 294 1 1816 145 24 27 chr1 4259463 4259589 -238404764 - AluSx SINE Alu -181 131 6 1185 210 80 25 chr1 4259615 4259901 -238404452 - AluJo SINE Alu 0 302 1 272 242 114 40 chr1 4260129 4260278 -238404075 - MER34 LTR ERV1 -15 527 368 243 235 0 0 chr1 4260538 4260589 -238403764 - MER34 LTR ERV1 -467 75 25 2283 122 0 0 chr1 4261205 4261509 -238402844 + AluSx SINE Alu 1 304 -8 243 253 116 11 chr1 4261515 4261610 -238402743 + L1 LINE L1 4954 5058 -1088 298 313 62 24 chr1 4262793 4263001 -238401352 + L1MEc LINE L1 1309 1524 -5039 970 148 0 0 chr1 4263049 4263184 -238401169 + AluSq/x SINE Alu 1 135 -177 2051 144 7 0 chr1 4263184 4263482 -238400871 + AluSx SINE Alu 1 300 -12 295 285 87 48 chr1 4263482 4263689 -238400664 + L1MEc LINE L1 1475 1689 -4695 2381 237 98 40 chr1 4263735 4264503 -238399850 - MER21B LTR ERV1 -51 812 1 1040 275 98 38 chr1 4264668 4265519 -238398834 + L1MEc LINE L1 2042 2886 -3496 621 199 66 29 chr1 4265552 4265688 -238398665 + Tigger3(Golem) DNA MER2_type 3 143 -2886 * 1140 174 36 101 chr1 4265684 4265960 -238398393 + Tigger3(Golem) DNA MER2_type 2781 3038 0 428 258 97 0 chr1 4266011 4266135 -238398218 + L1MEc LINE L1 2887 3022 -3360 1338 255 70 22 chr1 4266151 4266653 -238397700 + L1MEc LINE L1 4063 4588 -1794 1582 245 21 89 chr1 4266674 4266704 -238397649 - LTR41 LTR ERVL -7 766 736 2705 128 16 16 chr1 4266704 4267132 -238397221 - MSTA LTR MaLR 0 428 1 1582 245 21 89 chr1 4267132 4267660 -238396693 - LTR41 LTR ERVL -37 736 246 197 439 46 0 chr1 4267811 4267941 -238396412 - L2 LINE L2 -3 3269 3134 193 208 57 19 chr1 4267938 4267991 -238396362 - L2 LINE L2 -18 3254 3200 * 255 164 0 49 chr1 4267991 4268052 -238396301 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 415 336 79 19 chr1 4268283 4268815 -238395538 - L2 LINE L2 -339 2975 2412 294 263 113 8 chr1 4269121 4269254 -238395099 - L2 LINE L2 0 3313 3167 548 190 58 16 chr1 4269378 4269499 -238394854 + L2 LINE L2 3188 3313 0 270 0 0 0 chr1 4269893 4269923 -238394430 + (TGG)n Simple_repeat Simple_repeat 3 32 0 1812 165 7 3 chr1 4270958 4271261 -238393092 + AluJo SINE Alu 1 304 -8 398 284 76 42 chr1 4271271 4271535 -238392818 - L1MC/D LINE L1 -2252 5556 5284 2233 125 0 6 chr1 4272078 4272390 -238391963 + AluSx SINE Alu 1 310 -2 2060 120 31 0 chr1 4272415 4272706 -238391647 - AluSx SINE Alu -12 300 1 2364 146 90 19 chr1 4273160 4273409 -238390944 - L1MB3 LINE L1 -2 6181 5951 2257 102 0 32 chr1 4273409 4273723 -238390630 - AluSx SINE Alu -8 304 1 2364 146 90 19 chr1 4273723 4273939 -238390414 - L1MB3 LINE L1 -232 5951 5683 1461 154 63 75 chr1 4274459 4274791 -238389562 - L1MA9 LINE L1 -5 6307 5980 266 330 134 8 chr1 4274801 4275062 -238389291 + L2 LINE L2 2154 2447 -867 2776 172 60 14 chr1 4275075 4275646 -238388707 - L1MC3 LINE L1 -2 7783 7187 509 320 93 29 chr1 4275666 4276109 -238388244 + L2 LINE L2 2497 2967 -347 214 250 40 13 chr1 4276334 4276410 -238387943 + L2 LINE L2 3235 3312 -1 812 143 0 8 chr1 4276437 4276556 -238387797 - FLAM_C SINE Alu -25 118 1 520 310 16 22 chr1 4277113 4277297 -238387056 - MIR SINE MIR -33 229 47 223 335 37 69 chr1 4277599 4277787 -238386566 + MER5A DNA MER1_type 8 189 0 445 231 89 13 chr1 4278503 4278675 -238385678 - L1MA10 LINE L1 -2 6332 5986 26 30 0 0 chr1 4279190 4279223 -238385130 + AT_rich Low_complexity Low_complexity 1 33 0 1634 147 16 60 chr1 4279247 4279561 -238384792 - AluJo SINE Alu -12 300 1 506 123 0 0 chr1 4279681 4279754 -238384599 + AluSg/x SINE Alu 201 273 -36 306 0 0 0 chr1 4279771 4279805 -238384548 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 32 0 0 chr1 4283292 4283323 -238381030 + AT_rich Low_complexity Low_complexity 1 31 0 303 28 0 0 chr1 4283668 4283704 -238380649 + (CCA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr1 4284693 4284715 -238379638 + AT_rich Low_complexity Low_complexity 1 22 0 779 231 32 19 chr1 4285316 4285532 -238378821 + MIR SINE MIR 16 234 -28 371 266 63 19 chr1 4286049 4286207 -238378146 - MIR SINE MIR -51 211 47 2060 99 34 14 chr1 4286340 4286634 -238377719 - AluSg SINE Alu -10 300 1 196 214 0 54 chr1 4286761 4286817 -238377536 + MER5B DNA MER1_type 1 53 -125 272 263 0 42 chr1 4287195 4287290 -238377063 + T-rich Low_complexity Low_complexity 3 93 0 2145 121 0 3 chr1 4287415 4287712 -238376641 - AluSq SINE Alu -17 296 1 1670 135 37 80 chr1 4290648 4290974 -238373379 - AluJo SINE Alu 0 312 1 1214 192 77 27 chr1 4291123 4291420 -238372933 - AluJo SINE Alu 0 312 1 1973 157 7 3 chr1 4291430 4291735 -238372618 - AluJb SINE Alu -6 306 1 382 225 73 73 chr1 4291836 4291987 -238372366 - L2 LINE L2 0 3313 3163 790 239 113 13 chr1 4291990 4292228 -238372125 - MIR SINE MIR 0 262 1 1381 255 122 84 chr1 4292397 4292729 -238371624 - L2 LINE L2 -277 3036 2718 2008 134 0 3 chr1 4292729 4293041 -238371312 + AluSg SINE Alu 1 311 0 1381 255 122 84 chr1 4293041 4293077 -238371276 - L2 LINE L2 -595 2718 2685 1387 218 65 12 chr1 4293077 4293398 -238370955 + MER58B DNA MER1_type 4 341 0 1381 255 122 84 chr1 4293398 4294003 -238370350 - L2 LINE L2 -628 2685 1999 1600 142 13 0 chr1 4294003 4294235 -238370118 - AluSx SINE Alu -75 237 3 1381 255 122 84 chr1 4294235 4294431 -238369922 - L2 LINE L2 -1314 1999 1812 613 238 145 26 chr1 4294494 4294805 -238369548 - L2 LINE L2 -2165 1149 802 687 209 150 38 chr1 4294810 4295097 -238369256 - MER33 DNA MER1_type -4 320 2 405 0 0 0 chr1 4295335 4295380 -238368973 + (CA)n Simple_repeat Simple_repeat 2 46 0 448 193 101 0 chr1 4299127 4299246 -238365107 + L2 LINE L2 3180 3310 -3 207 100 0 0 chr1 4299850 4299880 -238364473 + (T)n Simple_repeat Simple_repeat 1 30 0 1619 185 7 23 chr1 4301606 4301914 -238362439 - AluJo SINE Alu -9 303 1 223 294 24 32 chr1 4303104 4303230 -238361123 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 211 293 0 0 chr1 4304057 4304115 -238360238 + G-rich Low_complexity Low_complexity 1 58 0 311 250 10 31 chr1 4305180 4305276 -238359077 + LTR67 LTR ERVL 459 552 -5 811 211 29 29 chr1 4305430 4305634 -238358719 + MIR SINE MIR 39 242 -20 438 322 49 83 chr1 4305689 4305953 -238358400 - L2 LINE L2 -18 3254 3000 587 267 78 0 chr1 4306339 4306542 -238357811 + MIR SINE MIR 25 250 -12 2119 194 25 75 chr1 4308628 4309159 -238355194 + MLT1D LTR MaLR 1 504 -1 188 220 80 0 chr1 4311800 4311850 -238352503 + MIR SINE MIR 81 134 -128 198 0 0 0 chr1 4312305 4312327 -238352026 + (GCTG)n Simple_repeat Simple_repeat 3 24 0 704 287 77 28 chr1 4313311 4313597 -238350756 + L1ME4a LINE L1 5794 6093 -28 2111 107 0 3 chr1 4313598 4313898 -238350455 - AluSx SINE Alu -2 310 12 26 30 0 0 chr1 4313940 4313973 -238350380 + AT_rich Low_complexity Low_complexity 1 33 0 2478 64 0 3 chr1 4313999 4314311 -238350042 - AluY SINE Alu 0 311 1 233 325 0 38 chr1 4314883 4314963 -238349390 - MIR SINE MIR -70 192 116 571 295 52 10 chr1 4314981 4315174 -238349179 - MIR SINE MIR -13 249 49 303 216 144 31 chr1 4315901 4315998 -238348355 + MLT1I LTR MaLR 294 401 -8 256 359 54 12 chr1 4316430 4316597 -238347756 + MIR SINE MIR 24 197 -65 223 319 121 14 chr1 4316600 4316741 -238347612 + MIR3 SINE MIR 17 172 -36 * 290 342 17 25 chr1 4316733 4316853 -238347500 - MIR SINE MIR -68 140 22 392 316 16 1 chr1 4317619 4317764 -238346589 + MIR SINE MIR 9 153 -62 327 254 16 56 chr1 4317889 4318015 -238346338 + MIR SINE MIR 94 214 -48 358 216 0 0 chr1 4318283 4318357 -238345996 + MIR SINE MIR 89 162 -100 4263 196 67 38 chr1 4318390 4318778 -238345575 + L1MB8 LINE L1 4105 4480 -1698 1896 112 10 26 chr1 4318778 4319082 -238345271 + AluSx SINE Alu 1 299 -13 4263 196 67 38 chr1 4319082 4319978 -238344375 + L1MB8 LINE L1 4480 5348 -830 1516 176 27 23 chr1 4319978 4320279 -238344074 + AluJo SINE Alu 11 312 0 4263 196 67 38 chr1 4320279 4320814 -238343539 + L1MB8 LINE L1 5348 5992 -186 1851 135 35 0 chr1 4320814 4321102 -238343251 + AluJb SINE Alu 1 298 -14 4263 196 67 38 chr1 4321102 4321295 -238343058 + L1MB8 LINE L1 5992 6178 0 439 229 97 21 chr1 4321297 4321441 -238342912 - L2 LINE L2 0 3313 3159 810 205 36 6 chr1 4321448 4321614 -238342739 - Tigger5 DNA MER2_type 0 2323 2153 653 155 17 9 chr1 4321606 4321722 -238342631 - Tigger5 DNA MER2_type -2206 117 1 * 429 253 136 86 chr1 4321722 4322130 -238342223 - L2 LINE L2 -160 3153 2708 2548 166 52 14 chr1 4322130 4322582 -238341771 + L1MB3 LINE L1 5682 6155 -28 2390 77 3 3 chr1 4322582 4322892 -238341461 - AluSg SINE Alu 0 310 1 2548 166 52 14 chr1 4322892 4322921 -238341432 + L1MB3 LINE L1 6155 6181 -2 429 253 136 86 chr1 4322921 4323011 -238341342 - L2 LINE L2 -605 2708 2624 204 254 0 0 chr1 4323234 4323293 -238341060 + GA-rich Low_complexity Low_complexity 4 62 0 1825 126 23 23 chr1 4323770 4324071 -238340282 - AluJo SINE Alu 0 312 12 30 45 0 0 chr1 4324191 4324235 -238340118 + AT_rich Low_complexity Low_complexity 1 44 0 186 133 0 0 chr1 4324370 4324400 -238339953 + (A)n Simple_repeat Simple_repeat 1 30 0 357 253 22 11 chr1 4324893 4324984 -238339369 + LTR16C LTR ERVL 388 479 -12 198 293 37 0 chr1 4325301 4325383 -238338970 + MIR3 SINE MIR 4 88 -120 2038 218 118 4 chr1 4325874 4326341 -238338012 + MLT2B1 LTR ERVL 1 520 0 238 103 0 0 chr1 4326456 4326495 -238337858 - L2 LINE L2 -93 3179 3141 405 276 55 0 chr1 4326508 4326635 -238337718 - L2 LINE L2 0 3313 3180 195 294 44 0 chr1 4327408 4327476 -238336877 + L2 LINE L2 3234 3304 -9 196 325 158 0 chr1 4328416 4328530 -238335823 + MIR SINE MIR 118 249 -13 983 101 0 57 chr1 4328539 4329034 -238335319 + (ATGGTG)n Simple_repeat Simple_repeat 1 647 0 740 86 27 54 chr1 4329045 4329270 -238335083 + (ATGGTG)n Simple_repeat Simple_repeat 1 218 0 736 113 16 48 chr1 4329281 4329467 -238334886 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 2356 74 0 0 chr1 4329493 4329789 -238334564 - AluY SINE Alu -11 300 5 244 313 111 14 chr1 4330543 4330687 -238333666 + MIR3 SINE MIR 33 190 -18 205 119 48 0 chr1 4331799 4331841 -238332512 + G-rich Low_complexity Low_complexity 4 47 0 2737 188 52 72 chr1 4332463 4332941 -238331412 + L1ME LINE L1 4589 5075 -1091 1885 129 56 0 chr1 4332941 4333227 -238331126 + AluSx SINE Alu 1 302 -10 2737 188 52 72 chr1 4333227 4333277 -238331076 + L1ME LINE L1 5075 5124 -1042 775 196 144 7 chr1 4333277 4333430 -238330923 + FAM SINE Alu 1 174 -1 2737 188 52 72 chr1 4333430 4334043 -238330310 + L1ME LINE L1 5124 5713 -453 222 37 0 0 chr1 4384788 4384815 -238279538 + (CA)n Simple_repeat Simple_repeat 1 27 0 1033 338 43 20 chr1 4385394 4386099 -238278254 + L1MEc LINE L1 344 1064 -5657 619 279 56 41 chr1 4386113 4386270 -238278083 + L1MEc LINE L1 1564 1717 -4823 2114 130 7 7 chr1 4386270 4386569 -238277784 - AluSx SINE Alu -12 300 2 619 279 56 41 chr1 4386569 4386752 -238277601 + L1MEc LINE L1 1717 1909 -4631 358 246 16 25 chr1 4386761 4386883 -238277470 + L1ME1 LINE L1 6040 6160 -6 249 242 0 29 chr1 4386959 4387027 -238277326 - MIR SINE MIR -64 144 78 1599 110 0 0 chr1 4387329 4387549 -238276804 - AluSg/x SINE Alu 0 303 84 313 250 16 80 chr1 4387559 4387747 -238276606 - LTR41 LTR ERVL -1 772 597 205 211 0 0 chr1 4388004 4388042 -238276311 + (TAA)n Simple_repeat Simple_repeat 2 39 0 516 213 0 43 chr1 4388095 4388236 -238276117 - LTR41 LTR ERVL -638 135 1 737 274 99 16 chr1 4388418 4388732 -238275621 - MER102b DNA MER1_type -1 340 1 1950 158 0 0 chr1 4388953 4389238 -238275115 + AluSx SINE Alu 1 285 -27 468 0 0 0 chr1 4389238 4389290 -238275063 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 354 330 99 42 chr1 4389468 4389823 -238274530 + L2 LINE L2 2897 3271 -1 21 0 0 0 chr1 4390455 4390476 -238273877 + AT_rich Low_complexity Low_complexity 1 21 0 240 185 0 0 chr1 4390946 4391000 -238273353 + (TA)n Simple_repeat Simple_repeat 2 55 0 576 201 112 99 chr1 4391535 4391784 -238272569 + MER33 DNA MER1_type 5 260 -2325 1090 81 0 7 chr1 4391784 4391932 -238272421 - L1PA8 LINE L1 -4 6168 6022 576 201 112 99 chr1 4391932 4391996 -238272357 + MER33 DNA MER1_type 260 322 -2 2193 211 65 0 chr1 4393224 4393717 -238270636 - L1MB5 LINE L1 0 6174 5650 291 280 144 8 chr1 4393798 4393916 -238270437 + MIR3 SINE MIR 26 159 -49 824 241 59 15 chr1 4394372 4394575 -238269778 + MIR SINE MIR 13 224 -38 214 244 0 0 chr1 4395292 4395333 -238269020 + L2 LINE L2 3227 3267 -5 417 302 82 21 chr1 4395989 4396162 -238268191 - MIR SINE MIR -78 130 3 513 0 0 0 chr1 4396330 4396387 -238267966 + (CATCC)n Simple_repeat Simple_repeat 4 60 0 345 298 76 105 chr1 4396394 4396736 -238267617 - L2 LINE L2 -3 3269 2938 478 303 14 66 chr1 4399443 4399809 -238264544 - MLT1I LTR MaLR 0 409 63 787 184 69 17 chr1 4399947 4400121 -238264232 - MER5A DNA MER1_type -6 183 1 347 301 46 85 chr1 4400546 4400741 -238263612 + MIR SINE MIR 9 190 -42 608 294 96 65 chr1 4401744 4402098 -238262255 + L2 LINE L2 2948 3312 -1 209 409 27 9 chr1 4402270 4402380 -238261973 - MIR SINE MIR -142 120 9 1792 157 56 14 chr1 4404470 4404826 -238259527 + L1MB3 LINE L1 5813 6183 0 288 200 0 0 chr1 4404897 4404957 -238259396 + (TG)n Simple_repeat Simple_repeat 1 60 0 2065 112 7 7 chr1 4405862 4406148 -238258205 - AluSx SINE Alu -26 286 1 753 218 99 36 chr1 4406156 4406408 -238257945 - HAL1 LINE L1 0 2507 2240 736 312 42 45 chr1 4406493 4407134 -238257219 - HAL1 LINE L1 -1800 707 69 258 358 0 16 chr1 4408441 4408564 -238255789 + (CA)n Simple_repeat Simple_repeat 2 122 0 * 349 302 22 33 chr1 4408521 4408703 -238255650 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 * 458 305 23 11 chr1 4408578 4408755 -238255598 + (CA)n Simple_repeat Simple_repeat 2 180 0 506 133 11 0 chr1 4408778 4408868 -238255485 + (CA)n Simple_repeat Simple_repeat 2 92 0 342 279 0 23 chr1 4409710 4409796 -238254557 - L2 LINE L2 -5 3267 3184 183 172 0 0 chr1 4410078 4410107 -238254246 - MIR SINE MIR -119 143 115 600 172 20 26 chr1 4410139 4410483 -238253870 + (CA)n Simple_repeat Simple_repeat 1 342 0 546 202 26 16 chr1 4410512 4411059 -238253294 + (CA)n Simple_repeat Simple_repeat 1 552 0 308 189 14 0 chr1 4411116 4411190 -238253163 + (CA)n Simple_repeat Simple_repeat 2 76 0 2030 134 14 3 chr1 4412458 4412749 -238251604 + AluJb SINE Alu 1 294 -18 299 264 14 14 chr1 4413037 4413185 -238251168 + GA-rich Low_complexity Low_complexity 1 148 0 493 211 18 18 chr1 4413232 4413341 -238251012 - MIR SINE MIR -55 153 45 266 258 72 62 chr1 4413876 4413973 -238250380 - L2 LINE L2 -6 3266 3169 372 94 0 0 chr1 4414047 4414100 -238250253 + (TG)n Simple_repeat Simple_repeat 1 53 0 634 232 24 0 chr1 4414794 4414958 -238249395 + MER20 DNA MER1_type 31 198 -21 559 232 153 23 chr1 4415000 4415177 -238249176 + MIR SINE MIR 32 231 -31 211 288 23 53 chr1 4415352 4415484 -238248869 - L2 LINE L2 -1242 2072 1945 1665 241 84 44 chr1 4415531 4416100 -238248253 - MLT1E LTR MaLR -1 592 1 280 305 11 12 chr1 4416156 4416269 -238248084 + MIR3 SINE MIR 40 156 -52 472 250 40 27 chr1 4416299 4416447 -238247906 - MER117 DNA MER1_type -47 150 1 1756 214 35 46 chr1 4417665 4418146 -238246207 - MLT1D LTR MaLR -22 483 8 255 244 73 146 chr1 4418253 4418401 -238245952 + MIR SINE MIR 18 148 -114 2299 120 0 0 chr1 4418401 4418710 -238245643 + AluY SINE Alu 1 309 -2 255 244 73 146 chr1 4418710 4418766 -238245587 + MIR SINE MIR 148 207 -55 333 250 139 9 chr1 4419224 4419332 -238245021 - MIR SINE MIR -109 153 32 1204 193 4 66 chr1 4421057 4421103 -238243250 - MLT2B1 LTR ERVL 0 520 473 204 40 0 0 chr1 4421103 4421128 -238243225 + (TG)n Simple_repeat Simple_repeat 2 26 0 1204 193 4 66 chr1 4421128 4421146 -238243207 - MLT2B1 LTR ERVL -47 473 455 1615 87 31 26 chr1 4421146 4421375 -238242978 + MER30 DNA MER1_type 1 230 0 1204 193 4 66 chr1 4421375 4421627 -238242726 - MLT2B1 LTR ERVL -65 455 267 595 231 8 0 chr1 4421595 4421872 -238242481 - MLT2B1 LTR ERVL -123 397 267 * 595 231 8 0 chr1 4421840 4422117 -238242236 - MLT2B1 LTR ERVL -123 397 267 595 231 8 0 chr1 4422085 4422215 -238242138 - MLT2B1 LTR ERVL -123 397 267 595 231 8 0 chr1 4422183 4422313 -238242040 - MLT2B1 LTR ERVL -123 397 267 * 1167 228 29 87 chr1 4422281 4422853 -238241500 - MLT2B1 LTR ERVL -112 442 1 2555 48 10 16 chr1 4423436 4423749 -238240604 - AluY SINE Alu 0 311 1 2335 82 7 7 chr1 4423775 4424068 -238240285 - AluSq SINE Alu -20 293 1 277 229 165 28 chr1 4424248 4424357 -238239996 + MER63 DNA MER1_type 6 755 -81 1258 152 13 45 chr1 4425088 4425312 -238239041 - AluJo SINE Alu -10 302 86 685 237 36 16 chr1 4426571 4426765 -238237588 - MER105 DNA DNA 0 204 7 648 217 84 7 chr1 4426783 4426926 -238237427 - MIR SINE MIR -72 190 37 1872 253 69 23 chr1 4426928 4427494 -238236859 - MLT1E LTR MaLR -1 592 1 271 323 122 0 chr1 4429613 4429842 -238234511 + L2 LINE L2 2553 2809 -505 939 220 59 84 chr1 4429898 4430289 -238234064 - MLT1B LTR MaLR -6 384 4 261 119 0 0 chr1 4432085 4432127 -238232226 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 422 302 82 62 chr1 4432138 4432542 -238231811 - L2 LINE L2 -25 3247 2836 1834 169 52 33 chr1 4432682 4433050 -238231303 - THE1C LTR MaLR 0 375 1 2462 80 3 0 chr1 4433566 4433866 -238230487 - AluY SINE Alu -10 301 1 207 0 0 0 chr1 4434045 4434068 -238230285 + (T)n Simple_repeat Simple_repeat 1 23 0 2368 180 32 31 chr1 4434636 4435159 -238229194 + MER68 LTR ERV1 38 561 -1 429 271 181 12 chr1 4435159 4435404 -238228949 - L2 LINE L2 -253 3060 2773 1248 112 12 0 chr1 4435457 4435618 -238228735 - AluSg/x SINE Alu -15 295 133 2228 128 10 0 chr1 4435629 4435935 -238228418 - AluSx SINE Alu -3 309 1 233 240 190 50 chr1 4435935 4436035 -238228318 - MIR SINE MIR -114 148 35 325 228 0 87 chr1 4436325 4436417 -238227936 + MIR SINE MIR 78 161 -101 2403 236 33 72 chr1 4436433 4436711 -238227642 - L1ME1 LINE L1 -4 6231 5944 324 0 0 0 chr1 4436717 4436753 -238227600 + (TG)n Simple_repeat Simple_repeat 1 36 0 2089 131 0 7 chr1 4436753 4437036 -238227317 - AluSx SINE Alu -29 283 1 2403 236 33 72 chr1 4437036 4437748 -238226605 - L1ME1 LINE L1 -291 5944 5206 2536 76 0 0 chr1 4437748 4438049 -238226304 - AluSc SINE Alu -8 301 1 2403 236 33 72 chr1 4438049 4438571 -238225782 - L1ME1 LINE L1 -1029 5206 4665 2092 91 18 0 chr1 4438571 4438845 -238225508 + AluSx SINE Alu 1 279 -33 285 29 0 0 chr1 4438846 4438880 -238225473 + (CA)n Simple_repeat Simple_repeat 2 35 0 2403 236 33 72 chr1 4438880 4439063 -238225290 - L1ME1 LINE L1 -1569 4666 4606 1391 142 0 10 chr1 4439091 4439288 -238225065 - AluJo SINE Alu -33 279 85 566 188 0 0 chr1 4439362 4439458 -238224895 + AluJ/FLAM SINE Alu 2 97 -215 533 261 8 0 chr1 4439464 4439594 -238224759 - L1MD3 LINE L1 -68 7927 7797 2014 266 58 9 chr1 4439597 4440344 -238224009 - L1ME1 LINE L1 -2185 4030 3248 432 222 98 39 chr1 4440340 4440493 -238223860 - L1ME1 LINE L1 -6216 180 19 * 365 250 34 11 chr1 4440538 4440626 -238223727 + L2 LINE L2 348 437 -2877 2780 129 13 22 chr1 4440703 4441081 -238223272 - L1PA16 LINE L1 -11 6155 5780 1769 158 46 23 chr1 4441081 4441266 -238223087 - AluJb SINE Alu -1 311 115 189 0 0 0 chr1 4441266 4441287 -238223066 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1769 158 46 23 chr1 4441287 4441405 -238222948 - AluJb SINE Alu -197 115 1 2780 129 13 22 chr1 4441405 4441475 -238222878 - L1PA16 LINE L1 -386 5780 5711 555 144 0 0 chr1 4441483 4441573 -238222780 + L1PA16 LINE L1 5623 5712 -454 1996 141 10 10 chr1 4441598 4441902 -238222451 + L1P4 LINE L1 5183 5488 -678 2344 115 0 3 chr1 4441902 4442215 -238222138 + AluSq SINE Alu 1 312 -1 1996 141 10 10 chr1 4442215 4442322 -238222031 + L1P4 LINE L1 5488 5593 -573 959 263 13 52 chr1 4442322 4442630 -238221723 + L2 LINE L2 428 723 -2591 331 228 22 0 chr1 4442643 4442735 -238221618 - MLT1J1 LTR MaLR -8 438 345 2913 288 149 18 chr1 4442739 4444102 -238220251 + L2 LINE L2 1089 2629 -685 593 323 138 14 chr1 4444231 4444774 -238219579 + L2 LINE L2 1153 1627 -1686 2080 140 0 19 chr1 4444774 4445089 -238219264 - AluJo SINE Alu -3 309 1 593 323 138 14 chr1 4445089 4445107 -238219246 + L2 LINE L2 1627 3309 -4 2173 128 0 0 chr1 4445511 4445799 -238218554 + AluSx SINE Alu 2 289 -23 208 135 0 0 chr1 4445799 4445836 -238218517 + (TA)n Simple_repeat Simple_repeat 1 37 0 365 266 121 62 chr1 4445838 4446094 -238218259 - L1MC5 LINE L1 -119 7842 7572 310 289 46 64 chr1 4445962 4446135 -238218218 + L1MCa LINE L1 1907 2076 -4350 * 29 28 0 0 chr1 4446141 4446177 -238218176 + AT_rich Low_complexity Low_complexity 1 36 0 691 245 84 88 chr1 4446750 4447011 -238217342 - MIR SINE MIR 0 262 3 24 0 0 0 chr1 4447534 4447558 -238216795 + AT_rich Low_complexity Low_complexity 1 24 0 187 326 0 0 chr1 4448454 4448500 -238215853 + L2 LINE L2 3211 3256 -16 * 217 262 0 0 chr1 4448468 4448510 -238215843 + MIR SINE MIR 221 262 0 310 304 32 16 chr1 4448650 4448775 -238215578 - MIR3 SINE MIR -21 187 61 2246 147 70 29 chr1 4449259 4449674 -238214679 + MSTB1 LTR MaLR 1 432 0 1491 188 35 48 chr1 4450855 4451034 -238213319 - MLT1B LTR MaLR -16 374 194 390 108 0 0 chr1 4451034 4451099 -238213254 + (TG)n Simple_repeat Simple_repeat 1 65 0 1491 188 35 48 chr1 4451099 4451292 -238213061 - MLT1B LTR MaLR -196 194 7 262 275 117 25 chr1 4451667 4451787 -238212566 - MIR SINE MIR -71 191 61 296 327 30 0 chr1 4452687 4452788 -238211565 + MIR SINE MIR 47 150 -112 261 283 0 0 chr1 4452816 4452876 -238211477 - MIR SINE MIR 0 262 203 284 219 38 6 chr1 4453519 4453679 -238210674 + (CA)n Simple_repeat Simple_repeat 1 165 0 497 236 16 39 chr1 4453695 4453877 -238210476 + (CA)n Simple_repeat Simple_repeat 1 178 0 290 219 22 17 chr1 4453900 4453936 -238210417 + (CA)n Simple_repeat Simple_repeat 1 35 -144 2502 73 0 13 chr1 4453936 4454237 -238210116 + AluY SINE Alu 1 297 -14 290 219 22 17 chr1 4454237 4454378 -238209975 + (CA)n Simple_repeat Simple_repeat 35 179 0 390 196 32 6 chr1 4454394 4454552 -238209801 + (CA)n Simple_repeat Simple_repeat 1 162 0 417 204 36 0 chr1 4454596 4454763 -238209590 + (CA)n Simple_repeat Simple_repeat 1 173 0 397 199 29 14 chr1 4454799 4455076 -238209277 + (CA)n Simple_repeat Simple_repeat 1 281 0 234 89 36 18 chr1 4455120 4455176 -238209177 + (CA)n Simple_repeat Simple_repeat 1 57 0 874 219 80 0 chr1 4457272 4457459 -238206894 - MER20 DNA MER1_type -17 202 1 180 345 54 24 chr1 4460680 4460848 -238203505 + MIR3 SINE MIR 4 176 -32 1191 151 10 0 chr1 4462328 4462520 -238201833 - AluJb SINE Alu -110 202 9 393 338 17 79 chr1 4462688 4462771 -238201582 - L2 LINE L2 -1 3271 3184 1724 111 12 80 chr1 4462771 4463095 -238201258 + AluSq SINE Alu 4 305 -8 393 338 17 79 chr1 4463095 4463301 -238201052 - L2 LINE L2 -88 3184 3000 2362 74 0 6 chr1 4463859 4464171 -238200182 + AluY SINE Alu 1 310 -1 2626 232 32 41 chr1 4464264 4464675 -238199678 + L1ME2 LINE L1 5412 5814 -350 2454 53 0 0 chr1 4464675 4464974 -238199379 + AluY SINE Alu 1 299 -12 2626 232 32 41 chr1 4464974 4465312 -238199041 + L1ME2 LINE L1 5814 6154 -10 332 223 25 122 chr1 4465373 4465570 -238198783 + L1MC4 LINE L1 7864 8041 -1 189 298 0 0 chr1 4465674 4465721 -238198632 + L3 LINE CR1 370 416 -1161 1726 159 13 29 chr1 4466331 4466646 -238197707 - AluJo SINE Alu -2 310 1 210 211 0 0 chr1 4466712 4466750 -238197603 + MIR SINE MIR 211 248 -14 1826 129 42 11 chr1 4466762 4467048 -238197305 + AluSq SINE Alu 1 295 -18 632 333 134 19 chr1 4467179 4468165 -238196188 + L2 LINE L2 1895 3056 -216 640 316 73 29 chr1 4468171 4468202 -238196151 - L2 LINE L2 -1 3312 3284 2212 130 41 36 chr1 4468202 4468564 -238195789 + THE1B LTR MaLR 1 364 0 640 316 73 29 chr1 4468564 4469089 -238195264 - L2 LINE L2 -29 3284 2724 2951 210 19 26 chr1 4469099 4469724 -238194629 - L1MB8 LINE L1 -20 6158 5538 200 234 94 0 chr1 4469755 4469819 -238194534 - L2 LINE L2 -618 2696 2627 730 331 131 21 chr1 4469860 4470633 -238193720 - L2 LINE L2 -2270 1044 187 325 302 71 39 chr1 4470644 4470826 -238193527 + L2 LINE L2 3124 3311 -2 2117 122 0 0 chr1 4472225 4472529 -238191824 - AluSx SINE Alu -8 304 1 2333 72 0 0 chr1 4472871 4473163 -238191190 - AluY SINE Alu -19 292 1 292 301 77 42 chr1 4473178 4473321 -238191032 - L1M1 LINE L1 -658 5647 5500 1642 250 117 101 chr1 4473329 4473606 -238190747 - L1MB8 LINE L1 -732 5432 5161 2125 110 0 10 chr1 4473606 4473906 -238190447 - AluSx SINE Alu -13 299 3 1642 250 117 101 chr1 4473906 4474519 -238189834 - L1MB8 LINE L1 -1003 5161 4559 246 62 0 0 chr1 4474529 4474561 -238189792 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1705 152 46 7 chr1 4474561 4474833 -238189520 - AluJo SINE Alu -26 286 1 1642 250 117 101 chr1 4474833 4475192 -238189161 - L1MB8 LINE L1 -1605 4559 4207 2072 109 0 3 chr1 4475192 4475500 -238188853 - AluSx SINE Alu 0 308 2 1642 250 117 101 chr1 4475500 4476312 -238188041 - L1MB8 LINE L1 -1957 4207 3409 1677 131 16 74 chr1 4476312 4476624 -238187729 - AluSx SINE Alu -18 294 1 1642 250 117 101 chr1 4476624 4477095 -238187258 - L1MB8 LINE L1 -2755 3409 2848 3543 60 2 0 chr1 4477095 4477541 -238186812 - L1PA8 LINE L1 0 6172 5726 1642 250 117 101 chr1 4477541 4477889 -238186464 - L1MB8 LINE L1 -3316 2848 2507 213 160 67 143 chr1 4478113 4478232 -238186121 + L2 LINE L2 2926 3035 -237 217 272 99 25 chr1 4478239 4478320 -238186033 + L2 LINE L2 3222 3308 -5 2089 201 23 12 chr1 4478400 4478832 -238185521 - L1MB5 LINE L1 -6 6168 5732 2118 105 10 0 chr1 4478951 4479247 -238185106 - AluSq SINE Alu -14 299 1 1982 129 3 3 chr1 4480191 4480485 -238183868 - AluSp SINE Alu -19 294 1 23 0 0 0 chr1 4480491 4480514 -238183839 + AT_rich Low_complexity Low_complexity 1 23 0 261 83 0 0 chr1 4481841 4481877 -238182476 + (TG)n Simple_repeat Simple_repeat 2 37 0 657 222 13 20 chr1 4483623 4483776 -238180577 - MLT1J2 LTR MaLR -263 187 36 2551 304 87 25 chr1 4486012 4486882 -238177471 + L1MC4a LINE L1 2432 3246 -2900 2027 108 31 0 chr1 4486882 4487168 -238177185 + AluSq SINE Alu 1 295 -18 2551 304 87 25 chr1 4487168 4487309 -238177044 + L1MC4a LINE L1 3246 3377 -2769 1700 177 20 0 chr1 4487309 4487609 -238176744 - AluJb SINE Alu -6 306 1 2551 304 87 25 chr1 4487609 4489055 -238175298 + L1MC4a LINE L1 3377 5044 -1102 1029 184 192 16 chr1 4489056 4489311 -238175042 + AluY SINE Alu 1 300 -11 2193 232 83 36 chr1 4489314 4489800 -238174553 + L1MC4a LINE L1 5039 5090 -1056 2067 174 76 2 chr1 4489800 4490197 -238174156 - MSTB LTR MaLR 0 426 1 2193 232 83 36 chr1 4490197 4490527 -238173826 + L1MC4a LINE L1 5090 5403 -743 326 264 181 19 chr1 4490530 4490685 -238173668 + L1ME1 LINE L1 5982 6161 -5 3827 95 39 0 chr1 4490751 4491317 -238173036 + L1MA2 LINE L1 5717 6304 0 2462 231 85 37 chr1 4491325 4492278 -238172075 + L1MC4a LINE L1 5925 6923 -885 2386 167 119 101 chr1 4492336 4493115 -238171238 + L1MC4 LINE L1 7262 8042 0 220 271 84 19 chr1 4493117 4493224 -238171129 + MIR SINE MIR 143 256 -6 262 230 81 14 chr1 4493338 4493412 -238170941 + MIR SINE MIR 23 101 -107 211 192 77 19 chr1 4493509 4493561 -238170792 - L2 LINE L2 0 3313 3259 234 207 103 0 chr1 4494031 4494089 -238170264 + MER5C DNA MER1_type 27 90 -234 23 33 0 0 chr1 4494390 4494420 -238169933 + AT_rich Low_complexity Low_complexity 1 30 0 2122 111 54 40 chr1 4494692 4495062 -238169291 - THE1C LTR MaLR 0 375 1 3733 183 24 6 chr1 4495095 4495818 -238168535 - L1MB3 LINE L1 -7 6176 5441 525 245 31 33 chr1 4495945 4496170 -238168183 + L1MC4a LINE L1 5670 5897 -224 6185 98 10 9 chr1 4496193 4497087 -238167266 + L1PB1 LINE L1 5256 6150 -1 235 258 10 31 chr1 4497131 4497228 -238167125 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 479 264 104 12 chr1 4497564 4497727 -238166626 - MIR SINE MIR -15 247 70 296 218 158 45 chr1 4498678 4498811 -238165542 + MIR3 SINE MIR 33 180 -28 324 289 132 0 chr1 4499491 4499605 -238164748 - MIR SINE MIR -87 175 47 2127 91 3 7 chr1 4499866 4500164 -238164189 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr1 4501190 4501220 -238163133 + AT_rich Low_complexity Low_complexity 1 30 0 428 325 54 30 chr1 4502007 4502302 -238162051 + MLT1I LTR MaLR 42 343 -66 2128 105 7 0 chr1 4502534 4502828 -238161525 + AluSx SINE Alu 1 296 -16 1675 136 213 28 chr1 4502832 4503193 -238161160 + MSTA LTR MaLR 1 428 0 450 0 0 0 chr1 4504426 4504476 -238159877 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 268 115 38 chr1 4504477 4504634 -238159719 - MIR SINE MIR -47 215 47 397 298 55 38 chr1 4505346 4505581 -238158772 + L2 LINE L2 2818 3056 -257 421 300 43 43 chr1 4505705 4505935 -238158418 + L2 LINE L2 3083 3312 -1 244 174 0 212 chr1 4506692 4506824 -238157529 - L1ME2 LINE L1 -167 5997 5894 2673 168 61 99 chr1 4506834 4507668 -238156685 - L1MC4 LINE L1 0 8042 7241 11125 208 45 29 chr1 4507673 4510615 -238153738 - L1MB7 LINE L1 -1 6183 3289 2402 56 0 28 chr1 4510615 4510935 -238153418 - AluY SINE Alu 0 311 1 11125 208 45 29 chr1 4510935 4511561 -238152792 - L1MB7 LINE L1 -2895 3289 2674 237 65 0 0 chr1 4511561 4511592 -238152761 + (TTA)n Simple_repeat Simple_repeat 2 32 0 11125 208 45 29 chr1 4511592 4511615 -238152738 - L1MB7 LINE L1 -3510 2674 2653 2365 77 3 3 chr1 4511615 4511926 -238152427 - AluY SINE Alu 0 311 1 1826 131 18 0 chr1 4511926 4512200 -238152153 - AluSq SINE Alu -34 279 1 11125 208 45 29 chr1 4512200 4512487 -238151866 - L1MB7 LINE L1 -3530 2654 2237 1023 281 93 24 chr1 4512481 4513243 -238151110 - L1M4 LINE L1 -963 5183 4369 * 500 234 45 7 chr1 4513321 4513475 -238150878 - L1ME2 LINE L1 -284 5886 5727 349 292 42 14 chr1 4513478 4513622 -238150731 - L1ME2 LINE L1 -574 5590 5443 275 273 50 72 chr1 4513942 4514081 -238150272 - L2 LINE L2 -10 3262 3127 203 268 18 0 chr1 4515046 4515102 -238149251 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 186 187 55 143 chr1 4515222 4515313 -238149040 + L2 LINE L2 3140 3222 -91 4398 191 48 66 chr1 4516609 4517771 -238146582 - L1MD3 LINE L1 0 8041 6914 372 317 32 68 chr1 4517780 4518001 -238146352 - L1MC4 LINE L1 -1 8041 7829 1271 237 12 36 chr1 4518049 4518382 -238145971 - L1ME2 LINE L1 -19 6145 5821 * 2283 220 106 82 chr1 4518381 4519334 -238145019 - L1MC4a LINE L1 -963 6845 5870 * 5277 192 35 36 chr1 4519322 4520406 -238143947 - L1MD1 LINE L1 0 6242 5158 6318 35 0 0 chr1 4520406 4521145 -238143208 - L1PA4 LINE L1 -1 6154 5416 5277 192 35 36 chr1 4521145 4521158 -238143195 - L1MD1 LINE L1 -1084 5158 5146 2079 131 0 0 chr1 4521158 4521463 -238142890 - AluY SINE Alu -6 305 1 5277 192 35 36 chr1 4521463 4521881 -238142472 - L1MD1 LINE L1 -1096 5146 4735 486 220 112 100 chr1 4522003 4522188 -238142165 - L1MD1 LINE L1 -2991 3155 2965 2217 101 0 0 chr1 4522188 4522486 -238141867 - AluSx SINE Alu -9 303 6 486 220 112 100 chr1 4522486 4522550 -238141803 - L1MD1 LINE L1 -3181 2965 2903 344 299 58 7 chr1 4522566 4522703 -238141650 - L1MD1 LINE L1 -3323 2823 2680 2250 133 123 5 chr1 4522756 4523139 -238141214 - MSTA LTR MaLR 0 428 1 269 118 20 0 chr1 4523285 4523336 -238141017 + CT-rich Low_complexity Low_complexity 1 52 0 1512 167 31 0 chr1 4523342 4523600 -238140753 - AluSx SINE Alu -46 266 1 625 313 72 23 chr1 4523643 4523841 -238140512 - L1MD1 LINE L1 -3681 2465 2245 2419 115 33 8 chr1 4523841 4524207 -238140146 + THE1C LTR MaLR 1 375 0 625 313 72 23 chr1 4524207 4524312 -238140041 - L1MD1 LINE L1 -3901 2245 2147 1055 133 6 12 chr1 4526157 4526322 -238138031 + U1 snRNA snRNA 1 164 -1 270 0 0 0 chr1 4526340 4526370 -238137983 + (A)n Simple_repeat Simple_repeat 1 30 0 1756 182 34 58 chr1 4526386 4526551 -238137802 + MLT1A2 LTR MaLR 3 170 -204 860 148 0 15 chr1 4526551 4526686 -238137667 + FLAM_C SINE Alu 1 133 0 1756 182 34 58 chr1 4526686 4526899 -238137454 + MLT1A2 LTR MaLR 170 372 -2 183 296 19 0 chr1 4526981 4527035 -238137318 + L2 LINE L2 3218 3272 0 182 37 37 0 chr1 4528077 4528104 -238136249 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 247 299 26 17 chr1 4528225 4528342 -238136011 - MER103 DNA DNA -48 118 1 329 314 107 6 chr1 4528441 4528600 -238135753 + MIR SINE MIR 22 196 -66 372 43 0 0 chr1 4528701 4528747 -238135606 + (CA)n Simple_repeat Simple_repeat 1 46 0 253 330 136 11 chr1 4529575 4529751 -238134602 + MIR SINE MIR 33 230 -32 261 57 0 0 chr1 4529944 4529979 -238134374 + (CCCA)n Simple_repeat Simple_repeat 2 36 0 202 289 228 35 chr1 4529991 4530105 -238134248 - L2 LINE L2 -1 3271 3136 402 187 0 0 chr1 4530115 4530206 -238134147 + (TG)n Simple_repeat Simple_repeat 1 91 0 208 167 19 37 chr1 4530251 4530305 -238134048 - L2 LINE L2 -194 3078 3026 2212 82 3 3 chr1 4531889 4532181 -238132172 - AluY SINE Alu -19 292 1 324 259 101 84 chr1 4533256 4533603 -238130750 - L1ME4a LINE L1 -1 6120 5768 2331 75 0 3 chr1 4533624 4533930 -238130423 - AluY SINE Alu -6 305 1 2158 106 0 6 chr1 4534115 4534426 -238129927 - AluSp SINE Alu -4 309 1 450 64 0 64 chr1 4535118 4535196 -238129157 + Alu SINE Alu 1 73 -236 477 188 0 43 chr1 4536220 4536406 -238127947 + G-rich Low_complexity Low_complexity 3 180 0 194 191 21 0 chr1 4536410 4536457 -238127896 + GA-rich Low_complexity Low_complexity 3 50 0 216 0 0 0 chr1 4538125 4538149 -238126204 + (TG)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 4538148 4538171 -238126182 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 2011 121 7 17 chr1 4538172 4538470 -238125883 - AluSx SINE Alu -17 295 1 194 228 152 33 chr1 4538563 4538655 -238125698 + MIR SINE MIR 89 191 -71 383 207 97 48 chr1 4539308 4539453 -238124900 + L2 LINE L2 3152 3303 -10 291 273 106 15 chr1 4540436 4540568 -238123785 + L2 LINE L2 2680 2823 -491 253 289 58 19 chr1 4540564 4540668 -238123685 + L2 LINE L2 2933 3040 -232 * 222 328 168 42 chr1 4541252 4541371 -238122982 + L2 LINE L2 3176 3309 -4 2051 131 0 0 chr1 4541586 4541884 -238122469 - AluSx SINE Alu -14 298 1 187 219 0 96 chr1 4542042 4542115 -238122238 + MIR SINE MIR 162 227 -35 1866 130 7 7 chr1 4542142 4542441 -238121912 + AluSx SINE Alu 1 299 -13 550 287 37 21 chr1 4543335 4543523 -238120830 + MIR SINE MIR 60 250 -12 317 290 30 60 chr1 4544739 4544839 -238119514 - MIR SINE MIR -146 116 20 258 244 0 26 chr1 4544860 4544938 -238119415 - L1MC5 LINE L1 -46 7915 7840 633 251 84 11 chr1 4545074 4545265 -238119088 + MIR SINE MIR 14 218 -44 234 321 46 30 chr1 4545371 4545399 -238118954 - L2 LINE L2 -4 3268 3242 2095 115 3 0 chr1 4545399 4545694 -238118659 + AluSx SINE Alu 1 296 -16 234 321 46 30 chr1 4545694 4545796 -238118557 - L2 LINE L2 -30 3242 3136 197 245 0 0 chr1 4545800 4545849 -238118504 + MIR SINE MIR 211 259 -3 2839 197 24 100 chr1 4545871 4546485 -238117868 - L1MC5 LINE L1 -132 7829 7327 2192 127 61 58 chr1 4546485 4546880 -238117473 - MSTD LTR MaLR 0 396 1 2839 197 24 100 chr1 4546880 4547316 -238117037 - L1MC5 LINE L1 -634 7327 6859 1704 157 56 0 chr1 4547316 4547603 -238116750 - AluSx SINE Alu -9 303 1 5487 182 55 32 chr1 4547636 4549178 -238115175 + L1M4 LINE L1 4020 5588 -590 357 332 40 60 chr1 4549216 4549444 -238114909 - L1M4 LINE L1 -1024 5122 4891 2300 81 13 0 chr1 4549444 4549569 -238114784 + AluY SINE Alu 1 123 -188 351 0 0 0 chr1 4549569 4549608 -238114745 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2300 81 13 0 chr1 4549608 4549789 -238114564 + AluY SINE Alu 123 311 0 357 332 40 60 chr1 4549789 4550130 -238114223 - L1M4 LINE L1 -1255 4891 4564 * 4064 89 6 18 chr1 4550120 4550609 -238113744 - L1PA4 LINE L1 -1088 5058 4593 7760 29 0 1 chr1 4550609 4551703 -238112650 + L1PA4 LINE L1 5063 6155 0 4064 89 6 18 chr1 4551703 4551915 -238112438 - L1P LINE L1 -1553 4593 4380 231 160 0 20 chr1 4551973 4552023 -238112330 - LTR66 LTR ERVL -168 442 394 221 30 61 0 chr1 4552025 4552058 -238112295 + (CATA)n Simple_repeat Simple_repeat 4 38 0 21 0 0 0 chr1 4552125 4552146 -238112207 + AT_rich Low_complexity Low_complexity 1 21 0 672 254 25 99 chr1 4552554 4552908 -238111445 - LTR16C LTR ERVL -1 490 163 279 159 0 0 chr1 4553039 4553083 -238111270 + MIR SINE MIR 141 184 -78 1756 112 34 4 chr1 4553468 4553736 -238110617 - AluSq SINE Alu -8 305 30 298 301 87 68 chr1 4558382 4558648 -238105705 - L2 LINE L2 -7 3265 2995 258 136 0 0 chr1 4558651 4558695 -238105658 + (TG)n Simple_repeat Simple_repeat 1 44 0 471 269 200 28 chr1 4558720 4559152 -238105201 - L1ME2 LINE L1 -279 5885 5367 626 262 37 21 chr1 4560379 4560566 -238103787 - MIR SINE MIR -62 200 11 1921 90 0 11 chr1 4561829 4562097 -238102256 + L1PA7 LINE L1 5887 6151 -3 28 29 0 0 chr1 4562097 4562132 -238102221 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 4563005 4563034 -238101319 + AT_rich Low_complexity Low_complexity 1 29 0 2405 52 7 3 chr1 4563075 4563382 -238100971 + AluY SINE Alu 1 308 -3 911 170 13 0 chr1 4563457 4563610 -238100743 - MLT1A1 LTR MaLR 0 365 211 1126 197 4 56 chr1 4563679 4563928 -238100425 - MLT1A1 LTR MaLR -120 245 10 248 232 36 0 chr1 4564053 4564109 -238100244 - MIR SINE MIR -69 193 136 545 187 179 0 chr1 4564474 4564608 -238099745 + MER53 DNA DNA 32 189 0 422 257 194 14 chr1 4566175 4566319 -238098034 + MER5A DNA MER1_type 14 183 -6 306 345 109 65 chr1 4566375 4566668 -238097685 - L3b LINE CR1 -95 1488 1183 322 276 26 60 chr1 4566668 4566784 -238097569 + L2 LINE L2 3201 3312 -1 1187 163 20 0 chr1 4566812 4567008 -238097345 - MER58A DNA MER1_type -24 200 1 2187 89 0 0 chr1 4569077 4569368 -238094985 + AluSq SINE Alu 1 291 -22 183 265 61 0 chr1 4569562 4569611 -238094742 + L2 LINE L2 3221 3272 0 448 183 19 10 chr1 4570981 4571085 -238093268 - MER5A DNA MER1_type -74 115 11 845 163 141 105 chr1 4571960 4572102 -238092251 + MER33 DNA MER1_type 1 137 -2448 2053 129 0 16 chr1 4572102 4572411 -238091942 - AluSx SINE Alu -8 304 1 845 163 141 105 chr1 4572411 4572581 -238091772 + MER33 DNA MER1_type 137 324 0 491 292 88 71 chr1 4573261 4573793 -238090560 - L2 LINE L2 0 3272 2727 818 288 58 53 chr1 4574746 4575232 -238089121 + L1MEc LINE L1 254 741 -5866 1001 312 46 15 chr1 4575256 4575801 -238088552 + L1MEc LINE L1 715 1276 -5331 2193 243 52 19 chr1 4575810 4576381 -238087972 - MLT1E LTR MaLR -3 590 1 718 266 139 33 chr1 4576381 4576963 -238087390 + L1MEc LINE L1 1087 1772 -4656 326 177 0 48 chr1 4576991 4577053 -238087300 - L1MCa LINE L1 -4362 2064 2006 308 250 0 0 chr1 4577022 4577086 -238087267 - L1MC4 LINE L1 -1339 6983 6920 * 2276 95 0 3 chr1 4577089 4577393 -238086960 - AluSq SINE Alu -10 303 1 487 225 6 84 chr1 4577393 4577497 -238086856 + L1MEc LINE L1 1911 1997 -4610 592 260 0 0 chr1 4577497 4577620 -238086733 + FLAM_A SINE Alu 1 123 -10 487 225 6 84 chr1 4577620 4577693 -238086660 + L1MEc LINE L1 1997 2074 -4533 327 232 71 0 chr1 4577698 4577810 -238086543 + L1MEc LINE L1 3271 3390 -3036 1280 245 27 62 chr1 4577824 4578228 -238086125 + MLT1B LTR MaLR 1 390 0 402 242 15 0 chr1 4578229 4578361 -238085992 + L1MEc LINE L1 3401 3534 -2892 441 0 0 0 chr1 4578363 4578412 -238085941 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 996 241 113 3 chr1 4578500 4578873 -238085480 + L1MEc LINE L1 3492 3905 -2521 * 3140 199 11 48 chr1 4578871 4579671 -238084682 + L1MEc LINE L1 4601 5371 -1055 4130 177 62 17 chr1 4579685 4580559 -238083794 + L1MB7 LINE L1 5271 6183 -1 * 8294 229 54 32 chr1 4580546 4581657 -238082696 + L1MEc LINE L1 2052 3138 -3288 2176 111 0 16 chr1 4581657 4581973 -238082380 + AluSx SINE Alu 1 311 -1 8294 229 54 32 chr1 4581973 4583076 -238081277 + L1MEc LINE L1 3138 4216 -2210 234 0 0 0 chr1 4583076 4583102 -238081251 + (TA)n Simple_repeat Simple_repeat 2 27 0 2132 106 0 7 chr1 4583102 4583404 -238080949 - AluSc SINE Alu -7 302 3 8294 229 54 32 chr1 4583404 4584156 -238080197 + L1MEc LINE L1 4215 5062 -1364 324 0 0 0 chr1 4584254 4584290 -238080063 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 154 0 26 chr1 4584790 4584829 -238079524 - L2 LINE L2 -10 3303 3266 288 310 28 35 chr1 4584845 4584987 -238079366 - L1ME LINE L1 -458 5663 5523 387 229 243 7 chr1 4585279 4585423 -238078930 - MIR SINE MIR -49 213 36 478 305 138 31 chr1 4585497 4586062 -238078291 - L2 LINE L2 -1 3312 2680 411 21 0 0 chr1 4588597 4588645 -238075708 + (TG)n Simple_repeat Simple_repeat 1 48 0 229 302 32 0 chr1 4588819 4588882 -238075471 - MIR3 SINE MIR -23 185 121 348 335 39 11 chr1 4589243 4589422 -238074931 + L2 LINE L2 1896 2079 -1235 447 259 17 0 chr1 4589745 4589861 -238074492 + L1ME LINE L1 5667 5784 -337 354 340 113 47 chr1 4590165 4590715 -238073638 + L2 LINE L2 2150 2735 -579 214 241 214 27 chr1 4590738 4590850 -238073503 + MIR SINE MIR 15 147 -115 477 0 0 0 chr1 4590924 4590977 -238073376 + (TTC)n Simple_repeat Simple_repeat 2 54 0 2160 92 0 0 chr1 4590977 4591297 -238073056 - AluSg SINE Alu 0 322 3 183 370 0 12 chr1 4591333 4591414 -238072939 + MIR SINE MIR 166 245 -17 220 319 109 0 chr1 4591492 4591611 -238072742 + L2 LINE L2 2893 3024 -289 250 337 47 0 chr1 4592843 4592929 -238071424 - L2 LINE L2 -30 3242 3153 411 244 22 0 chr1 4593574 4593664 -238070689 + MIR SINE MIR 57 148 -114 1367 179 135 39 chr1 4594421 4594828 -238069525 - MLT1J2 LTR MaLR 0 450 5 500 324 88 6 chr1 4594833 4595003 -238069350 - MIR SINE MIR -62 200 17 2693 118 70 0 chr1 4595664 4596062 -238068291 - MSTA LTR MaLR -2 426 1 205 133 0 0 chr1 4596269 4596299 -238068054 + MIR SINE MIR 116 145 -63 1215 222 61 51 chr1 4596343 4596893 -238067460 + MLT1C LTR MaLR 6 467 0 208 200 22 0 chr1 4597484 4597529 -238066824 + (TTA)n Simple_repeat Simple_repeat 1 46 0 423 244 21 20 chr1 4597685 4597811 -238066542 - MIR SINE MIR -61 147 20 214 215 215 11 chr1 4598182 4598275 -238066078 + MIR SINE MIR 114 225 -37 24 0 0 0 chr1 4598943 4598967 -238065386 + AT_rich Low_complexity Low_complexity 1 24 0 502 290 98 27 chr1 4601840 4602064 -238062289 + MIR SINE MIR 6 245 -17 229 252 63 63 chr1 4602185 4602296 -238062057 + L2 LINE L2 3183 3293 -20 371 315 163 0 chr1 4602429 4602607 -238061746 - L2 LINE L2 0 3313 3107 1172 242 118 25 chr1 4602607 4602962 -238061391 - MLT1E LTR MaLR 0 593 206 669 236 18 48 chr1 4603009 4603174 -238061179 - MIR SINE MIR -91 171 12 1516 297 109 18 chr1 4603213 4603826 -238060527 - L2 LINE L2 -691 2623 1955 484 332 101 29 chr1 4604345 4604731 -238059622 - L1MEc LINE L1 -5941 455 42 228 276 121 0 chr1 4605498 4605556 -238058797 - L2 LINE L2 -2 3270 3206 374 250 33 0 chr1 4605813 4605905 -238058448 + MIR SINE MIR 36 130 -78 492 227 0 25 chr1 4606634 4606772 -238057581 - MER69A DNA AcHobo -42 135 1 2279 84 0 3 chr1 4607192 4607489 -238056864 + AluSq SINE Alu 1 296 -17 661 281 17 22 chr1 4609781 4609959 -238054394 + MIR SINE MIR 85 261 -1 633 276 190 6 chr1 4610370 4610696 -238053657 - L2 LINE L2 -1 3312 2927 1498 214 9 24 chr1 4610704 4611040 -238053313 + L1MB4 LINE L1 5841 6171 -9 507 304 84 49 chr1 4611070 4612163 -238052190 - L1MC/D LINE L1 -803 5343 4636 9292 231 96 26 chr1 4612223 4613572 -238050781 - L1ME1 LINE L1 -156 5944 4691 1427 194 113 7 chr1 4613572 4613881 -238050472 - MER2 DNA MER2_type 0 344 3 9292 231 96 26 chr1 4613881 4616085 -238048268 - L1ME1 LINE L1 -1409 4691 2642 2615 35 0 0 chr1 4616085 4616396 -238047957 - AluYa5 SINE Alu 0 311 1 9292 231 96 26 chr1 4616396 4617112 -238047241 - L1ME1 LINE L1 -3458 2642 1977 1136 231 5 0 chr1 4617112 4617333 -238047020 - MER58A DNA MER1_type -2 222 1 9292 231 96 26 chr1 4617333 4617377 -238046976 - L1ME1 LINE L1 -4123 1977 1938 1106 65 18 12 chr1 4617377 4617547 -238046806 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1906 134 0 0 chr1 4617553 4617828 -238046525 - AluSx SINE Alu -37 275 1 9292 231 96 26 chr1 4617828 4618698 -238045655 - L1ME1 LINE L1 -4166 1934 384 217 369 71 20 chr1 4620841 4621039 -238043314 - L3 LINE CR1 -120 1457 1250 219 345 43 9 chr1 4622239 4622355 -238041998 + MIR3 SINE MIR 4 123 -85 1321 211 85 58 chr1 4622390 4622661 -238041692 - MLT1C LTR MaLR 0 467 178 2302 133 5 29 chr1 4622661 4623045 -238041308 - THE1C LTR MaLR 0 375 1 1321 211 85 58 chr1 4623045 4623218 -238041135 - MLT1C LTR MaLR -289 178 11 306 305 0 0 chr1 4623234 4623316 -238041037 + MIR SINE MIR 178 259 -3 285 304 82 86 chr1 4623430 4623673 -238040680 - L2 LINE L2 -36 3236 2995 645 236 118 0 chr1 4624139 4624300 -238040053 + MIR SINE MIR 62 241 -21 229 189 57 0 chr1 4624554 4624607 -238039746 + Charlie2 DNA MER1_type 2780 2835 -27 385 224 12 12 chr1 4625586 4625671 -238038682 + L2 LINE L2 3228 3312 -1 216 246 0 88 chr1 4625846 4625903 -238038450 - L2 LINE L2 -85 3187 3136 2497 111 98 0 chr1 4626028 4626416 -238037937 + MSTA LTR MaLR 1 426 -2 186 43 0 0 chr1 4626458 4626481 -238037872 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 360 255 51 20 chr1 4626482 4626580 -238037773 - L2 LINE L2 -14 3299 3199 1393 261 19 44 chr1 4626586 4627106 -238037247 - L1MEd LINE L1 -1691 4438 3932 2471 281 77 41 chr1 4627111 4628041 -238036312 - HERV16 LTR ERVL -2372 2624 1661 1369 276 71 19 chr1 4628046 4628513 -238035840 - HERV16 LTR ERVL -3495 1501 1011 1046 287 51 29 chr1 4628641 4629052 -238035301 - HERV16 LTR ERVL -4155 841 422 850 204 64 0 chr1 4629132 4629304 -238035049 - MER58A DNA MER1_type 0 224 42 313 170 0 0 chr1 4629348 4629401 -238034952 + L1ME LINE L1 5514 5566 -600 * 711 270 34 6 chr1 4629398 4629724 -238034629 - L1MEd LINE L1 -2695 3434 3100 294 163 58 12 chr1 4629728 4629814 -238034539 + CT-rich Low_complexity Low_complexity 2 91 0 382 238 54 30 chr1 4629934 4630102 -238034251 - L1MEd LINE L1 -3130 2999 2828 505 277 8 0 chr1 4630123 4630242 -238034111 + L2 LINE L2 2955 3074 -239 959 124 0 20 chr1 4630305 4630458 -238033895 - AluSg/x SINE Alu 0 312 163 475 277 8 23 chr1 4630505 4630635 -238033718 + L2 LINE L2 3185 3312 -1 733 261 159 46 chr1 4630676 4631285 -238033068 - L1MEd LINE L1 -3359 2770 2093 1643 71 5 0 chr1 4631408 4631620 -238032733 + AluSg/x SINE Alu 86 298 -14 870 269 146 25 chr1 4631882 4632626 -238031727 - L2 LINE L2 0 3313 2250 219 36 0 0 chr1 4632643 4632671 -238031682 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1985 127 0 0 chr1 4632673 4632956 -238031397 - AluSx SINE Alu -29 283 1 480 179 42 0 chr1 4632956 4633051 -238031302 - MER69 DNA AcHobo -4 2522 2424 211 284 40 0 chr1 4633102 4633176 -238031177 - L2 LINE L2 -1042 2272 2196 2116 187 52 16 chr1 4633176 4633620 -238030733 + MLT1C LTR MaLR 8 467 0 1182 254 126 36 chr1 4633623 4633932 -238030421 - L2 LINE L2 -1135 2179 1899 2291 50 40 10 chr1 4633932 4634230 -238030123 + AluY SINE Alu 1 307 -4 1182 254 126 36 chr1 4634230 4634506 -238029847 - L2 LINE L2 -1415 1899 1541 659 260 78 70 chr1 4634539 4635013 -238029340 - L1MEd LINE L1 -4613 1697 1228 1455 168 29 19 chr1 4635013 4635322 -238029031 + AluJb SINE Alu 1 312 0 659 260 78 70 chr1 4635322 4635806 -238028547 - L1MEd LINE L1 -5082 1228 700 22 35 0 0 chr1 4636144 4636173 -238028180 + AT_rich Low_complexity Low_complexity 1 29 0 1961 102 15 0 chr1 4637757 4638031 -238026322 + AluSq SINE Alu 1 278 -35 189 0 0 0 chr1 4638036 4638057 -238026296 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 494 148 8 141 chr1 4638160 4638288 -238026065 - Charlie1 DNA MER1_type -20 2741 2631 332 231 194 22 chr1 4638285 4638419 -238025934 - Charlie1 DNA MER1_type -2523 238 82 * 180 125 0 0 chr1 4639609 4639641 -238024712 + (CA)n Simple_repeat Simple_repeat 1 32 0 213 65 0 0 chr1 4641937 4641968 -238022385 + (G)n Simple_repeat Simple_repeat 1 31 0 1017 151 6 17 chr1 4644124 4644296 -238020057 + MLT2D LTR ERVL 6 175 -239 1449 177 28 32 chr1 4644496 4644778 -238019575 + MLT2C2 LTR ERVL 149 429 -35 285 139 28 14 chr1 4644778 4644850 -238019503 + (TA)n Simple_repeat Simple_repeat 2 74 0 264 164 55 0 chr1 4644862 4644917 -238019436 + MLT2C2 LTR ERVL 463 520 0 486 306 111 5 chr1 4645299 4645515 -238018838 - L2 LINE L2 0 3313 3075 361 237 0 0 chr1 4645521 4645597 -238018756 + L1MB3 LINE L1 6089 6164 -19 1886 139 186 6 chr1 4645597 4645957 -238018396 - MSTA LTR MaLR 0 428 4 621 203 8 8 chr1 4645983 4646111 -238018242 + L1MB8 LINE L1 6051 6178 0 282 250 15 0 chr1 4646127 4646195 -238018158 - L2 LINE L2 -229 3084 3016 272 209 252 35 chr1 4646205 4646320 -238018033 - MIR3 SINE MIR -64 144 5 2005 131 20 3 chr1 4646389 4646694 -238017659 - AluSx SINE Alu -2 310 1 1232 206 5 5 chr1 4646824 4647042 -238017311 - MER58A DNA MER1_type 0 224 7 270 153 0 0 chr1 4647334 4647393 -238016960 + CT-rich Low_complexity Low_complexity 4 62 0 564 101 0 0 chr1 4647480 4647569 -238016784 + (TCCA)n Simple_repeat Simple_repeat 4 92 0 329 321 47 0 chr1 4647577 4647683 -238016670 - L2 LINE L2 -6 3266 3156 398 297 8 17 chr1 4648780 4648898 -238015455 - MIR SINE MIR -40 222 106 222 298 38 51 chr1 4649406 4649564 -238014789 - MIR3 SINE MIR -6 202 47 553 326 25 18 chr1 4650552 4650828 -238013525 - L1ME3A LINE L1 -223 5947 5670 259 132 0 0 chr1 4650840 4650878 -238013475 - MLT1G1 LTR MaLR 0 595 558 693 276 67 7 chr1 4651022 4651268 -238013085 - MLT1H1 LTR MaLR -288 242 11 686 269 74 29 chr1 4651287 4651546 -238012807 - L1ME3A LINE L1 -555 5609 5363 2192 70 3 17 chr1 4651546 4651848 -238012505 - AluY SINE Alu -13 298 1 686 269 74 29 chr1 4651848 4652188 -238012165 - L1ME3A LINE L1 -801 5363 4982 413 271 80 53 chr1 4652989 4653177 -238011176 + MIR3 SINE MIR 13 205 -3 1281 230 46 41 chr1 4654342 4654781 -238009572 - MLT1C LTR MaLR -16 451 11 1339 218 103 0 chr1 4656292 4656631 -238007722 - MLT1B LTR MaLR -16 374 1 247 288 100 75 chr1 4657299 4657459 -238006894 - L3 LINE CR1 -79 1498 1335 219 69 0 0 chr1 4657520 4657549 -238006804 + (TG)n Simple_repeat Simple_repeat 1 29 0 255 229 9 29 chr1 4658911 4659016 -238005337 + GA-rich Low_complexity Low_complexity 6 108 0 275 244 0 61 chr1 4659898 4659980 -238004373 + MIR SINE MIR 82 158 -104 511 322 66 13 chr1 4660003 4660210 -238004143 + L2 LINE L2 2143 2364 -950 2380 106 6 0 chr1 4660210 4660521 -238003832 - AluSq SINE Alu 0 313 1 511 322 66 13 chr1 4660521 4660540 -238003813 + L2 LINE L2 2364 2381 -933 4967 126 15 11 chr1 4660547 4660935 -238003418 - L1PA15 LINE L1 -1 6164 5779 2599 64 0 3 chr1 4660935 4661246 -238003107 - AluY SINE Alu -1 310 1 4967 126 15 11 chr1 4661246 4661664 -238002689 - L1PA15 LINE L1 -386 5779 5355 2245 127 0 13 chr1 4661717 4662032 -238002321 + AluSx SINE Alu 1 311 -1 1029 127 6 19 chr1 4662032 4662213 -238002140 + AluJb SINE Alu 134 312 0 769 267 148 33 chr1 4662229 4662773 -238001580 + L2 LINE L2 2421 3047 -266 532 291 92 19 chr1 4663517 4663723 -238000630 + MIR SINE MIR 1 221 -41 346 265 102 7 chr1 4664210 4664357 -237999996 + MIR SINE MIR 45 205 -57 2030 178 102 2 chr1 4666646 4667067 -237997286 - MLT1C LTR MaLR -4 463 1 545 253 35 61 chr1 4667229 4667427 -237996926 + MIR SINE MIR 51 243 -19 254 324 57 22 chr1 4668047 4668278 -237996075 - L2 LINE L2 -2 3270 2965 224 250 44 19 chr1 4669158 4669318 -237995035 + (AGTTG)n Simple_repeat Simple_repeat 1 164 0 296 290 153 27 chr1 4670732 4670915 -237993438 - MIR3 SINE MIR 0 208 3 250 291 23 35 chr1 4670938 4671024 -237993329 - L2 LINE L2 -1 3312 3228 1004 165 43 0 chr1 4671032 4671220 -237993133 - MLT1A1 LTR MaLR 0 365 170 516 121 0 48 chr1 4671243 4671326 -237993027 - AluJ/FRAM SINE Alu -12 300 222 324 70 0 0 chr1 4671655 4671698 -237992655 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 278 235 141 24 chr1 4672851 4672936 -237991417 + L2 LINE L2 3216 3310 -3 195 312 184 0 chr1 4675468 4675577 -237988776 + L2 LINE L2 3136 3264 -8 954 262 128 19 chr1 4676210 4676633 -237987720 - MER77 LTR ERV1 -15 590 122 2528 81 0 0 chr1 4677699 4678009 -237986344 - AluY SINE Alu -1 310 1 2189 95 3 11 chr1 4678038 4678358 -237985995 - AluSx SINE Alu 0 318 1 272 253 152 40 chr1 4678600 4678699 -237985654 + MER20 DNA MER1_type 1 110 -109 209 370 43 0 chr1 4678703 4678795 -237985558 - MIR SINE MIR -84 124 29 471 332 65 14 chr1 4679454 4679671 -237984682 - MIR SINE MIR -33 229 2 690 201 16 58 chr1 4679899 4680088 -237984265 - MER20 DNA MER1_type 0 219 39 269 294 78 10 chr1 4681595 4681697 -237982656 - MIR SINE MIR -105 157 49 192 276 255 0 chr1 4683985 4684083 -237980270 - L2 LINE L2 -1 3271 3149 293 299 120 25 chr1 4684105 4684389 -237979964 - MLT1K LTR MaLR -90 498 188 787 251 22 27 chr1 4684407 4684473 -237979880 + MER58A DNA MER1_type 2 67 -2353 1890 125 4 7 chr1 4684473 4684745 -237979608 + AluSx SINE Alu 38 308 -4 787 251 22 27 chr1 4684745 4684901 -237979452 + MER58A DNA MER1_type 67 223 -1 2107 194 36 2 chr1 4685125 4685574 -237978779 + L1MB5 LINE L1 5711 6174 0 2342 103 3 0 chr1 4687093 4687394 -237976959 + AluSp SINE Alu 3 304 -9 247 213 0 0 chr1 4687719 4687766 -237976587 - MIR SINE MIR -13 249 203 320 160 53 27 chr1 4687861 4687936 -237976417 - MLT1J LTR MaLR -8 503 427 188 35 35 0 chr1 4687936 4687965 -237976388 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6451 13 5 0 chr1 4687965 4688719 -237975634 - L1PA3 LINE L1 -13 6142 5385 675 274 33 8 chr1 4688772 4689081 -237975272 - MLT1J LTR MaLR -141 370 1 401 0 20 0 chr1 4689623 4689672 -237974681 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 556 241 0 60 chr1 4689739 4689905 -237974448 - L2 LINE L2 0 3313 3158 853 264 39 43 chr1 4690172 4690426 -237973927 + MIR SINE MIR 4 256 -6 250 185 19 0 chr1 4690429 4690483 -237973870 + (ATGGTG)n Simple_repeat Simple_repeat 1 55 0 396 217 0 0 chr1 4690506 4690644 -237973709 + (ATG)n Simple_repeat Simple_repeat 2 139 0 204 234 170 21 chr1 4690653 4690747 -237973606 - L2 LINE L2 -21 3292 3185 1724 85 0 0 chr1 4691890 4692101 -237972252 - AluY SINE Alu -15 296 86 262 400 52 0 chr1 4693431 4693586 -237970767 + MIR SINE MIR 50 212 -50 199 321 84 68 chr1 4693741 4693990 -237970363 + L2 LINE L2 2015 2267 -1047 408 254 145 29 chr1 4694854 4694992 -237969361 + MIR SINE MIR 47 200 -62 316 287 17 9 chr1 4697289 4697404 -237966949 + MIR SINE MIR 63 178 -84 2308 91 14 0 chr1 4697798 4698094 -237966259 - AluSp SINE Alu -13 300 1 270 0 0 0 chr1 4698126 4698156 -237966197 + (TG)n Simple_repeat Simple_repeat 2 31 0 363 271 0 0 chr1 4698183 4698268 -237966085 - MIR SINE MIR -100 162 78 2961 220 49 39 chr1 4698295 4698939 -237965414 - L1ME1 LINE L1 -11 6155 5519 1566 144 9 114 chr1 4698939 4699056 -237965297 + AluJo SINE Alu 1 129 -183 2282 98 10 0 chr1 4699056 4699352 -237965001 - AluSp SINE Alu -14 299 1 1566 144 9 114 chr1 4699352 4699394 -237964959 + AluJo SINE Alu 129 174 -138 1915 118 22 4 chr1 4699394 4699665 -237964688 + AluSx SINE Alu 5 280 -32 249 33 0 0 chr1 4699665 4699695 -237964658 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 1566 144 9 114 chr1 4699695 4699867 -237964486 + AluJo SINE Alu 172 299 -13 2961 220 49 39 chr1 4699867 4700044 -237964309 - L1ME1 LINE L1 -647 5519 5326 1656 143 4 50 chr1 4700052 4700332 -237964021 - AluJo SINE Alu -2 310 44 15125 186 24 30 chr1 4700360 4701609 -237962744 - L1MA6 LINE L1 0 7719 6464 420 37 0 0 chr1 4701609 4701663 -237962690 + (TG)n Simple_repeat Simple_repeat 1 54 0 2344 115 0 0 chr1 4701667 4701980 -237962373 - AluSq SINE Alu 0 313 1 15125 186 24 30 chr1 4701980 4702814 -237961539 - L1MA6 LINE L1 -1258 6461 5623 2629 155 19 7 chr1 4702814 4703241 -237961112 + MSTB1 LTR MaLR 1 432 0 15125 186 24 30 chr1 4703241 4704952 -237959401 - L1MA6 LINE L1 -2096 5623 3903 360 0 0 0 chr1 4704952 4704992 -237959361 + (TC)n Simple_repeat Simple_repeat 2 41 0 * 405 0 0 0 chr1 4704991 4705036 -237959317 + (TA)n Simple_repeat Simple_repeat 2 46 0 15125 186 24 30 chr1 4704992 4705840 -237958513 - L1MA6 LINE L1 -3816 3903 3051 2461 143 18 39 chr1 4705840 4706281 -237958072 + MSTB1 LTR MaLR 1 432 0 15125 186 24 30 chr1 4706281 4707588 -237956765 - L1MA6 LINE L1 -4668 3051 2097 3193 197 61 31 chr1 4707673 4708626 -237955727 - L1ME1 LINE L1 -864 5282 4304 207 304 101 32 chr1 4708693 4708851 -237955502 + MIR3 SINE MIR 13 181 -27 410 281 127 91 chr1 4709802 4709870 -237954483 - L2 LINE L2 -30 3242 3178 2260 92 17 3 chr1 4709870 4710164 -237954189 + AluSq SINE Alu 3 300 -13 410 281 127 91 chr1 4710164 4710428 -237953925 - L2 LINE L2 -94 3178 2899 496 291 53 5 chr1 4710558 4710747 -237953606 - MIR SINE MIR -15 247 50 265 317 67 0 chr1 4710802 4710922 -237953431 - MIR SINE MIR -14 248 121 188 53 35 70 chr1 4711704 4711761 -237952592 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1887 164 0 16 chr1 4712152 4712469 -237951884 - AluJb SINE Alu 0 312 1 303 309 122 0 chr1 4712481 4712604 -237951749 + MIR SINE MIR 86 223 -39 399 224 0 0 chr1 4713357 4713464 -237950889 + (CA)n Simple_repeat Simple_repeat 2 108 0 222 361 56 0 chr1 4715031 4715139 -237949214 + L2 LINE L2 3153 3266 -6 318 253 13 0 chr1 4715552 4715627 -237948726 - MIR3 SINE MIR -21 187 112 200 333 121 8 chr1 4716399 4716531 -237947822 - MIR SINE MIR -66 196 50 774 113 0 0 chr1 4717695 4717819 -237946534 + (TG)n Simple_repeat Simple_repeat 1 124 0 1574 81 36 5 chr1 4718133 4718354 -237945999 + AluSc SINE Alu 79 306 -3 187 222 44 0 chr1 4718467 4718512 -237945841 + L2 LINE L2 3226 3272 0 40680 35 2 3 chr1 4718555 4724720 -237939633 - L1PA4 LINE L1 0 6155 4 1353 276 193 15 chr1 4724858 4724991 -237939362 + L2 LINE L2 2008 2116 -1198 2063 134 0 10 chr1 4724991 4725296 -237939057 - AluSx SINE Alu -10 302 1 1353 276 193 15 chr1 4725296 4725832 -237938521 + L2 LINE L2 2116 2796 -518 1117 297 133 39 chr1 4725898 4725941 -237938412 + L2 LINE L2 2048 2086 -1227 2200 118 3 3 chr1 4725941 4726254 -237938099 - AluSq SINE Alu 0 313 1 1117 297 133 39 chr1 4726254 4727313 -237937040 + L2 LINE L2 2086 3311 -2 2255 115 0 3 chr1 4727938 4728251 -237936102 - AluSq SINE Alu -1 312 1 543 274 80 7 chr1 4728284 4728477 -237935876 + MIR SINE MIR 22 233 -29 297 344 94 0 chr1 4729406 4729534 -237934819 - MIR SINE MIR -110 152 13 2270 88 7 0 chr1 4729986 4730291 -237934062 + AluSq SINE Alu 1 307 -6 199 286 0 18 chr1 4732739 4732795 -237931558 - L2 LINE L2 -18 3254 3200 431 316 8 15 chr1 4735020 4735153 -237929200 + L2 LINE L2 3179 3310 -3 219 327 33 43 chr1 4735260 4735471 -237928882 + L2 LINE L2 2717 2925 -389 196 244 58 35 chr1 4735617 4735703 -237928650 + L2 LINE L2 3182 3269 -3 654 295 35 13 chr1 4735898 4736125 -237928228 + MIR SINE MIR 28 259 -3 492 233 0 0 chr1 4736128 4736274 -237928079 + (ATG)n Simple_repeat Simple_repeat 2 147 0 701 156 24 12 chr1 4736277 4736444 -237927909 + (ATGGTG)n Simple_repeat Simple_repeat 4 172 0 2338 96 70 8 chr1 4736491 4736876 -237927477 - MSTA LTR MaLR -11 417 9 569 220 0 16 chr1 4736905 4737087 -237927266 + (ATG)n Simple_repeat Simple_repeat 1 179 0 201 154 0 0 chr1 4737148 4737187 -237927166 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 419 250 0 17 chr1 4737212 4737388 -237926965 + (ATG)n Simple_repeat Simple_repeat 3 175 0 497 284 77 0 chr1 4739003 4739158 -237925195 - MIR SINE MIR -64 198 32 1230 216 23 20 chr1 4740340 4740646 -237923707 + L1MD1 LINE L1 5800 6106 -136 234 0 0 0 chr1 4741246 4741272 -237923081 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 246 260 7 123 chr1 4741273 4741372 -237922981 - L2 LINE L2 -8 3264 3186 1011 194 123 83 chr1 4741372 4741549 -237922804 - MLT1A1 LTR MaLR -1 364 196 1888 151 6 35 chr1 4741549 4741866 -237922487 + AluJb SINE Alu 1 308 -4 1011 194 123 83 chr1 4741866 4742038 -237922315 - MLT1A1 LTR MaLR -169 196 1 246 260 7 123 chr1 4742038 4742084 -237922269 - L2 LINE L2 -86 3186 3136 1292 209 159 0 chr1 4744052 4744430 -237919923 - MLT1C LTR MaLR -28 439 2 299 318 216 25 chr1 4744585 4744947 -237919406 - L2 LINE L2 0 3313 2883 275 350 108 5 chr1 4745554 4745748 -237918605 + MIR SINE MIR 20 233 -29 230 279 103 0 chr1 4746657 4746725 -237917628 + MIR3 SINE MIR 104 178 -30 181 276 171 33 chr1 4748349 4748501 -237915852 - L2 LINE L2 -189 3083 2911 602 358 5 10 chr1 4749342 4749549 -237914804 + MIR SINE MIR 7 212 -50 476 302 31 0 chr1 4749549 4749678 -237914675 - L2 LINE L2 -1 3312 3180 376 316 39 32 chr1 4749993 4750148 -237914205 + L2 LINE L2 3117 3272 0 386 340 62 14 chr1 4751621 4751765 -237912588 - L2 LINE L2 -4 3268 3118 296 376 43 12 chr1 4752681 4752843 -237911510 + MIR3 SINE MIR 27 193 -15 24 32 0 0 chr1 4753074 4753105 -237911248 + AT_rich Low_complexity Low_complexity 1 31 0 214 400 12 0 chr1 4753488 4753568 -237910785 + L3 LINE CR1 1472 1552 -25 296 241 97 14 chr1 4753815 4753960 -237910393 - MER20 DNA MER1_type -57 162 6 372 274 86 8 chr1 4754639 4754756 -237909597 - MIR SINE MIR -122 140 15 2131 166 17 6 chr1 4755290 4755651 -237908702 - MLT1A1 LTR MaLR 0 365 1 2130 123 7 0 chr1 4756261 4756571 -237907782 + AluSx SINE Alu 1 312 0 205 291 55 36 chr1 4756924 4757034 -237907319 + MIR SINE MIR 81 192 -70 339 318 32 16 chr1 4758846 4758972 -237905381 + L2 LINE L2 3144 3271 -1 2348 231 30 0 chr1 4759143 4759701 -237904652 - L1MB5 LINE L1 -13 6161 5587 353 329 124 9 chr1 4761134 4761344 -237903009 - MIR SINE MIR -14 248 15 277 368 0 11 chr1 4761709 4761804 -237902549 - MIR SINE MIR -106 156 63 672 180 6 17 chr1 4762916 4763094 -237901259 + GA-rich Low_complexity Low_complexity 3 178 0 273 256 0 44 chr1 4763747 4763837 -237900516 + C-rich Low_complexity Low_complexity 3 88 0 22 0 0 0 chr1 4763988 4764010 -237900343 + AT_rich Low_complexity Low_complexity 1 22 0 288 355 50 21 chr1 4764990 4765131 -237899222 + MIR SINE MIR 38 182 -80 332 327 27 9 chr1 4765870 4765980 -237898373 + MIR SINE MIR 20 131 -131 232 303 81 0 chr1 4766924 4767023 -237897330 + L2 LINE L2 2950 3056 -216 789 156 12 42 chr1 4768118 4768285 -237896068 + MER3 DNA MER1_type 48 209 0 1050 82 0 0 chr1 4768845 4768979 -237895374 - AluSp/q SINE Alu -14 299 166 2044 114 38 0 chr1 4768981 4769271 -237895082 - AluSx SINE Alu -11 301 1 495 213 62 19 chr1 4769274 4769434 -237894919 + MER58 DNA MER1_type 43 209 -132 330 355 69 31 chr1 4770015 4770384 -237893969 + L1MEd LINE L1 895 1302 -1205 28 0 0 0 chr1 4770686 4770714 -237893639 + AT_rich Low_complexity Low_complexity 1 28 0 306 335 101 53 chr1 4771227 4771603 -237892750 + L1MEd LINE L1 2982 3375 -2771 22 0 0 0 chr1 4773629 4773651 -237890702 + AT_rich Low_complexity Low_complexity 1 22 0 237 197 211 0 chr1 4776817 4776888 -237887465 + MARNA DNA Mariner 277 362 -224 219 69 0 0 chr1 4777419 4777448 -237886905 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 185 111 44 0 chr1 4780811 4780856 -237883497 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 288 312 52 13 chr1 4781167 4781321 -237883032 - MIR3 SINE MIR -19 189 30 273 317 10 40 chr1 4782198 4782299 -237882054 - MIR SINE MIR -103 159 62 379 286 0 0 chr1 4783782 4783866 -237880487 + MIR SINE MIR 71 154 -108 373 286 0 0 chr1 4783872 4783956 -237880397 + MIR SINE MIR 71 154 -108 446 325 27 37 chr1 4783962 4784150 -237880203 + MIR SINE MIR 71 256 -6 204 282 70 92 chr1 4785362 4785504 -237878849 - MIR SINE MIR -74 188 50 193 225 0 0 chr1 4785507 4785547 -237878806 - L2 LINE L2 -82 3190 3151 182 328 17 17 chr1 4785996 4786112 -237878241 - L2 LINE L2 -166 3106 2991 204 125 0 0 chr1 4789292 4789324 -237875029 + (CAGCT)n Simple_repeat Simple_repeat 3 34 0 656 228 0 12 chr1 4789553 4790069 -237874284 + (TG)n Simple_repeat Simple_repeat 1 509 0 339 328 173 9 chr1 4790090 4790419 -237873934 + L2 LINE L2 1794 2176 -1138 5983 33 1 2 chr1 4790522 4791316 -237873037 - L1P LINE L1 -1747 4399 3607 7309 56 12 7 chr1 4791316 4792768 -237871585 - SVA Other Other -839 1386 44 6084 114 4 10 chr1 4793299 4794629 -237869724 + L1PA15 LINE L1 4842 6165 0 1138 192 37 4 chr1 4794630 4794875 -237869478 + MLT1A1 LTR MaLR 113 365 0 337 253 118 56 chr1 4794958 4795136 -237869217 - MIR SINE MIR -53 209 21 700 177 7 7 chr1 4796115 4796394 -237867959 + (ATG)n Simple_repeat Simple_repeat 1 279 0 902 139 7 39 chr1 4796328 4796672 -237867681 + (ATGGTG)n Simple_repeat Simple_repeat 1 332 0 720 169 14 41 chr1 4796692 4797058 -237867295 + (ATGGTG)n Simple_repeat Simple_repeat 1 355 0 928 149 9 0 chr1 4797194 4797430 -237866923 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 180 336 168 9 chr1 4797442 4797555 -237866798 - L2 LINE L2 -16 3256 3126 319 212 176 0 chr1 4798569 4798654 -237865699 + MLT2D LTR ERVL 17 116 -298 26168 52 2 9 chr1 4798656 4802304 -237862049 + L1P LINE L1 1 3621 -2525 653 66 11 0 chr1 4802318 4802409 -237861944 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 216 156 16 31 chr1 4802615 4802679 -237861674 + GA-rich Low_complexity Low_complexity 4 66 0 356 301 15 15 chr1 4802742 4802875 -237861478 + GA-rich Low_complexity Low_complexity 4 136 0 684 223 0 0 chr1 4803258 4803568 -237860785 + (TG)n Simple_repeat Simple_repeat 1 310 0 183 42 0 0 chr1 4803568 4803592 -237860761 + (GA)n Simple_repeat Simple_repeat 1 24 0 1296 304 171 7 chr1 4803592 4804713 -237859640 + L2 LINE L2 1794 3110 -203 312 315 70 5 chr1 4804720 4804920 -237859433 - L1MC4 LINE L1 -1 8041 7829 1066 223 12 56 chr1 4804961 4805302 -237859051 - L1ME2 LINE L1 0 6164 5839 414 341 6 43 chr1 4805306 4805470 -237858883 + L2 LINE L2 3149 3306 -7 261 277 219 0 chr1 4806326 4806481 -237857872 - L2 LINE L2 -829 2485 2297 319 265 10 20 chr1 4807511 4807609 -237856744 + MIR SINE MIR 46 142 -66 2361 81 0 0 chr1 4807664 4807959 -237856394 + AluY SINE Alu 1 295 -16 452 320 33 7 chr1 4808845 4808998 -237855355 - MIR3 SINE MIR -34 174 18 766 255 15 25 chr1 4809345 4809549 -237854804 + MER63A DNA MER1_type 1 202 -8 614 251 64 48 chr1 4810060 4810247 -237854106 + MIR SINE MIR 58 247 -15 858 212 0 5 chr1 4810492 4810676 -237853677 - MER96B DNA MER1_type? -186 231 49 190 200 0 109 chr1 4810794 4810849 -237853504 + L2 LINE L2 3201 3249 -23 319 157 29 0 chr1 4811635 4811705 -237852648 + (CA)n Simple_repeat Simple_repeat 1 72 0 210 279 49 0 chr1 4811707 4811768 -237852585 + (CATG)n Simple_repeat Simple_repeat 3 66 0 327 305 17 33 chr1 4811777 4811959 -237852394 - L1MCa LINE L1 -1339 6983 1995 254 257 40 0 chr1 4811983 4812057 -237852296 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 277 195 12 12 chr1 4812061 4812143 -237852210 + (CA)n Simple_repeat Simple_repeat 2 83 0 250 273 227 18 chr1 4812649 4812759 -237851594 - L2 LINE L2 0 3272 3140 2347 65 3 3 chr1 4813526 4813820 -237850533 + AluSx SINE Alu 1 294 -18 633 226 0 0 chr1 4815775 4816244 -237848109 + (CA)n Simple_repeat Simple_repeat 1 469 0 558 242 5 0 chr1 4816256 4816696 -237847657 + (CA)n Simple_repeat Simple_repeat 1 442 0 2111 134 0 0 chr1 4817681 4817986 -237846367 + AluSx SINE Alu 1 305 -7 182 281 53 0 chr1 4820543 4820600 -237843753 + MIR SINE MIR 44 103 -159 342 215 0 0 chr1 4821305 4821435 -237842918 + (TG)n Simple_repeat Simple_repeat 1 130 0 455 222 0 6 chr1 4821454 4821634 -237842719 + (TG)n Simple_repeat Simple_repeat 1 179 0 194 283 0 10 chr1 4821712 4821811 -237842542 + (TG)n Simple_repeat Simple_repeat 1 98 0 229 317 0 0 chr1 4821826 4821886 -237842467 + (TG)n Simple_repeat Simple_repeat 1 60 0 207 204 0 0 chr1 4821925 4821969 -237842384 + (TG)n Simple_repeat Simple_repeat 2 45 0 312 210 17 28 chr1 4821991 4822172 -237842181 + (TG)n Simple_repeat Simple_repeat 2 180 0 180 125 0 0 chr1 4822210 4822242 -237842111 + (TG)n Simple_repeat Simple_repeat 1 32 0 498 224 29 52 chr1 4823329 4823503 -237840850 + MER53 DNA DNA 1 170 -19 209 344 62 0 chr1 4824747 4824843 -237839510 + L2 LINE L2 3154 3255 -17 991 190 78 5 chr1 4828338 4828543 -237835810 - MER58A DNA MER1_type -4 220 1 738 187 42 17 chr1 4829237 4829570 -237834783 - MSTD LTR MaLR 0 396 2 320 288 130 14 chr1 4830022 4830168 -237834185 - MIR SINE MIR -80 182 20 2310 112 0 0 chr1 4830176 4830488 -237833865 - AluSx SINE Alu 0 312 1 546 215 90 7 chr1 4831496 4831640 -237832713 + MIR SINE MIR 77 232 -30 247 368 86 31 chr1 4832394 4832557 -237831796 + MIR SINE MIR 20 191 -71 1180 267 124 2 chr1 4833060 4833502 -237830851 - MLT1J LTR MaLR -9 502 7 336 333 157 0 chr1 4834000 4834153 -237830200 + L3 LINE CR1 1294 1470 -107 1293 202 121 57 chr1 4834735 4835191 -237829162 - MER31A LTR ERV1 0 485 1 233 379 42 0 chr1 4835193 4835288 -237829065 - L2 LINE L2 -23 3249 3151 745 194 27 21 chr1 4835373 4835559 -237828794 + MER20 DNA MER1_type 29 215 -4 1311 166 92 0 chr1 4835562 4835833 -237828520 - MER46C DNA MER2_type -42 296 1 525 319 113 7 chr1 4835833 4836300 -237828053 - L2 LINE L2 -155 3158 2647 204 245 0 0 chr1 4841497 4841546 -237822807 + T-rich Low_complexity Low_complexity 6 54 0 364 303 83 51 chr1 4842233 4842490 -237821863 + L2 LINE L2 2730 3001 -312 2206 108 0 0 chr1 4842490 4842808 -237821545 - AluSq SINE Alu 0 318 1 364 303 83 51 chr1 4842808 4842875 -237821478 + L2 LINE L2 3001 3064 -249 226 261 98 33 chr1 4843553 4843645 -237820708 - MIR SINE MIR -77 131 34 310 287 113 40 chr1 4843845 4843995 -237820358 - L2 LINE L2 0 3313 3153 229 162 0 0 chr1 4844062 4844099 -237820254 + Alu SINE Alu 1 37 -265 1768 140 0 4 chr1 4844099 4844363 -237819990 - AluSx SINE Alu -12 300 38 364 280 47 0 chr1 4846106 4846213 -237818140 + MIR SINE MIR 38 149 -59 271 293 27 0 chr1 4846323 4846398 -237817955 + MIR3 SINE MIR 101 177 -31 263 326 54 16 chr1 4846712 4846841 -237817512 + L2 LINE L2 3138 3271 -1 423 325 100 0 chr1 4847391 4847551 -237816802 + MIR SINE MIR 8 183 -79 637 217 30 18 chr1 4847655 4847821 -237816532 - MER96B DNA MER1_type? -234 183 16 3813 152 126 32 chr1 4848306 4849061 -237815292 - LTR1B LTR ERV1 0 826 1 186 103 0 0 chr1 4851391 4851420 -237812933 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 466 354 143 0 chr1 4851726 4851949 -237812404 + MIR SINE MIR 5 259 -3 229 296 70 0 chr1 4852168 4852239 -237812114 + MIR SINE MIR 60 135 -127 1214 151 11 0 chr1 4852697 4852882 -237811471 + AluSg/x SINE Alu 119 305 -7 799 133 24 12 chr1 4852913 4853079 -237811274 + GA-rich Low_complexity Low_complexity 4 171 0 853 330 142 19 chr1 4853126 4853914 -237810439 - L2 LINE L2 -376 2938 2054 429 264 16 24 chr1 4854399 4854524 -237809829 - MIR SINE MIR -35 227 104 571 309 73 16 chr1 4855986 4856177 -237808176 + MIR SINE MIR 48 249 -13 1169 175 79 21 chr1 4856342 4856633 -237807720 - MLT2D LTR ERVL 0 414 107 798 79 0 40 chr1 4856634 4856760 -237807593 - L1PA8 LINE L1 0 6172 6052 * 7574 31 6 3 chr1 4856755 4857848 -237806505 - L1PA4 LINE L1 -3 6152 5058 306 359 78 51 chr1 4857965 4858221 -237806132 + L1M4 LINE L1 3085 3347 -2799 200 158 18 0 chr1 4859303 4859360 -237804993 + (CA)n Simple_repeat Simple_repeat 1 58 0 320 368 21 7 chr1 4860188 4860332 -237804021 - MIR SINE MIR -14 248 103 406 247 11 0 chr1 4860712 4860805 -237803548 + L2 LINE L2 3179 3272 0 229 248 9 9 chr1 4860805 4860914 -237803439 + GA-rich Low_complexity Low_complexity 2 110 0 307 282 18 45 chr1 4862405 4862515 -237801838 - MER5B DNA MER1_type -36 142 36 226 336 179 9 chr1 4863380 4863603 -237800750 + MIR SINE MIR 2 262 0 234 62 0 0 chr1 4864277 4864309 -237800044 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 339 283 70 89 chr1 4864310 4864568 -237799785 - L2 LINE L2 -15 3298 3046 636 313 119 13 chr1 4865065 4865442 -237798911 - L2 LINE L2 -443 2871 2455 1830 195 120 24 chr1 4865527 4865802 -237798551 - MLT1C LTR MaLR -1 466 219 2147 101 3 0 chr1 4865802 4866088 -237798265 + AluSp SINE Alu 1 287 -26 372 77 0 0 chr1 4866088 4866140 -237798213 + (CA)n Simple_repeat Simple_repeat 2 53 0 1830 195 120 24 chr1 4866140 4866288 -237798065 - MLT1C LTR MaLR -247 220 1 340 255 97 0 chr1 4867533 4867645 -237796708 + MIR SINE MIR 8 133 -75 237 268 0 56 chr1 4868727 4868798 -237795555 + MIR3 SINE MIR 138 204 -4 263 335 44 0 chr1 4869087 4869245 -237795108 - L1ME4a LINE L1 -2 6119 5955 414 321 103 19 chr1 4869258 4869520 -237794833 - L1ME4a LINE L1 -224 5897 5614 255 311 205 6 chr1 4869538 4869699 -237794654 + MIR SINE MIR 70 262 0 1007 189 41 5 chr1 4873434 4873630 -237790723 - L1MD2 LINE L1 -3 6356 6154 207 0 0 0 chr1 4873630 4873653 -237790700 + (TG)n Simple_repeat Simple_repeat 2 24 0 2182 91 0 20 chr1 4873716 4874012 -237790341 - AluSg SINE Alu -16 294 5 3961 224 39 50 chr1 4874014 4875033 -237789320 - L1MD2 LINE L1 -409 5833 4805 2174 110 7 3 chr1 4875033 4875334 -237789019 - AluSq SINE Alu -11 302 1 3961 224 39 50 chr1 4875334 4875764 -237788589 - L1MD2 LINE L1 -1437 4805 4372 2301 86 0 19 chr1 4875764 4876077 -237788276 + AluY SINE Alu 1 307 -4 3961 224 39 50 chr1 4876077 4876089 -237788264 - L1MD2 LINE L1 -1870 4372 4361 1869 134 3 26 chr1 4876089 4876394 -237787959 + AluSg SINE Alu 1 298 -12 3961 224 39 50 chr1 4876394 4876836 -237787517 - L1MD2 LINE L1 -1881 4361 3956 207 167 0 0 chr1 4877111 4877153 -237787200 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 621 170 79 6 chr1 4878116 4878281 -237786072 + MER96B DNA MER1_type? 1 177 -240 260 303 220 8 chr1 4879322 4879454 -237784899 - MIR SINE MIR -54 208 49 252 333 0 0 chr1 4880458 4880587 -237783766 - L1ME4a LINE L1 -5 6116 5988 467 59 0 15 chr1 4880948 4881016 -237783337 + (TGAA)n Simple_repeat Simple_repeat 2 68 0 554 310 59 5 chr1 4881596 4881783 -237782570 - MIR SINE MIR -63 199 3 429 327 140 5 chr1 4881796 4882010 -237782343 + MIR SINE MIR 16 258 -4 308 287 74 9 chr1 4882704 4882812 -237781541 - MIR SINE MIR -124 138 24 187 287 49 91 chr1 4882871 4882967 -237781386 + L2 LINE L2 3176 3266 -47 2336 90 3 7 chr1 4882967 4883277 -237781076 - AluSq SINE Alu -4 309 1 187 287 49 91 chr1 4883277 4883323 -237781030 + L2 LINE L2 3266 3312 -1 249 83 0 0 chr1 4883332 4883368 -237780985 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 370 260 24 32 chr1 4883469 4883592 -237780761 + MIR SINE MIR 107 228 -34 1403 184 26 22 chr1 4884450 4884722 -237779631 - AluJo SINE Alu -1 311 39 2290 102 0 13 chr1 4885782 4886096 -237778257 + AluSx SINE Alu 1 310 -2 315 146 0 0 chr1 4887094 4887149 -237777204 + (GGGGA)n Simple_repeat Simple_repeat 4 58 0 338 251 31 115 chr1 4890183 4890243 -237774110 + MER69A DNA AcHobo 1 64 -2462 982 257 30 5 chr1 4890243 4890445 -237773908 + MER63A DNA MER1_type 1 207 -3 338 251 31 115 chr1 4890445 4890535 -237773818 + MER69A DNA AcHobo 64 134 -2392 1547 160 7 28 chr1 4890535 4890822 -237773531 + AluJo SINE Alu 24 304 -8 338 251 31 115 chr1 4890822 4890861 -237773492 + MER69A DNA AcHobo 134 175 -2 870 256 85 50 chr1 4891246 4891648 -237772705 + Charlie8 DNA MER1_type 56 471 -1946 254 219 96 14 chr1 4891659 4891732 -237772621 - MER91C DNA MER1_type -30 110 32 554 311 75 43 chr1 4892050 4892372 -237771981 + L2 LINE L2 2941 3272 0 204 40 0 0 chr1 4892382 4892407 -237771946 + (TGGA)n Simple_repeat Simple_repeat 4 28 0 235 239 15 30 chr1 4893266 4893333 -237771020 + CT-rich Low_complexity Low_complexity 2 67 0 292 286 26 78 chr1 4894010 4894164 -237770189 + L2 LINE L2 3165 3310 -3 21 0 0 0 chr1 4894192 4894213 -237770140 + AT_rich Low_complexity Low_complexity 1 21 0 943 241 57 75 chr1 4894260 4894403 -237769950 - L1ME4a LINE L1 -3 6118 5974 207 0 0 0 chr1 4894403 4894426 -237769927 + (TTG)n Simple_repeat Simple_repeat 2 24 0 943 241 57 75 chr1 4894426 4894577 -237769776 - L1ME4a LINE L1 -147 5974 5822 1630 96 0 237 chr1 4894577 4894973 -237769380 - AluSx SINE Alu 0 302 1 378 0 0 0 chr1 4894982 4895024 -237769329 + (TG)n Simple_repeat Simple_repeat 2 43 0 2162 77 0 11 chr1 4895024 4895310 -237769043 - AluY SINE Alu -28 283 1 943 241 57 75 chr1 4895310 4895493 -237768860 - L1ME4a LINE L1 -305 5816 5638 3825 91 0 8 chr1 4895493 4896011 -237768342 + MER75 DNA T2_type 1 514 0 681 236 127 0 chr1 4896044 4896201 -237768152 + MER45A DNA AcHobo 2 178 0 2672 93 8 3 chr1 4896206 4896559 -237767794 - THE1A LTR MaLR 0 355 1 1896 177 41 66 chr1 4896758 4897198 -237767155 - MSTB1 LTR MaLR -3 429 1 1064 234 162 13 chr1 4897384 4897778 -237766575 - L1MC4 LINE L1 -143 7899 7447 5068 110 7 21 chr1 4897813 4898089 -237766264 - L1PA10 LINE L1 -1 6167 5889 2455 74 0 3 chr1 4898089 4898401 -237765952 - AluY SINE Alu 0 311 1 5068 110 7 21 chr1 4898401 4898970 -237765383 - L1PA10 LINE L1 -279 5889 5334 686 217 29 11 chr1 4898966 4899141 -237765212 - L1MC4 LINE L1 -627 7415 7238 * 1494 161 140 9 chr1 4899144 4899493 -237764860 - L1MC4 LINE L1 -958 7084 6690 378 0 0 0 chr1 4899494 4899536 -237764817 + (CA)n Simple_repeat Simple_repeat 1 42 0 981 147 76 5 chr1 4899537 4899735 -237764618 - MER2 DNA MER2_type -1 344 133 1192 103 16 0 chr1 4899736 4899921 -237764432 - MER30 DNA MER1_type 0 230 43 448 220 8 42 chr1 4900058 4900176 -237764177 + MER117 DNA MER1_type 66 179 -18 323 296 117 39 chr1 4901748 4901978 -237762375 - L2 LINE L2 0 3313 3066 195 294 15 15 chr1 4901970 4902038 -237762315 - L2 LINE L2 -5 3308 3241 * 243 239 0 0 chr1 4903451 4903518 -237760835 + (TG)n Simple_repeat Simple_repeat 1 67 0 496 278 139 0 chr1 4904086 4904259 -237760094 - MIR SINE MIR -35 227 31 192 271 29 57 chr1 4904263 4904333 -237760020 - MIR SINE MIR -55 153 86 203 138 0 0 chr1 4905245 4905274 -237759079 + (TGAG)n Simple_repeat Simple_repeat 1 29 0 1080 124 0 0 chr1 4905275 4905453 -237758900 + (TGAA)n Simple_repeat Simple_repeat 3 180 0 205 273 36 0 chr1 4906461 4906516 -237757837 - L2 LINE L2 -14 3299 3243 478 250 96 6 chr1 4906573 4906729 -237757624 - MER117 DNA MER1_type -27 170 1 2193 196 44 4 chr1 4908040 4908560 -237755793 - MER74A LTR ERVL -2 556 16 287 265 0 15 chr1 4909074 4909142 -237755211 - MIR SINE MIR -77 185 119 2068 103 7 3 chr1 4909171 4909471 -237754882 + AluSx SINE Alu 1 301 -11 286 317 10 19 chr1 4909542 4909646 -237754707 + MIR3 SINE MIR 106 208 0 340 303 40 0 chr1 4909812 4909911 -237754442 - L2 LINE L2 -2 3270 3168 235 88 0 0 chr1 4912595 4912629 -237751724 + MIR SINE MIR 112 145 -63 200 327 0 0 chr1 4915863 4915915 -237748438 - MIR SINE MIR -76 132 81 270 316 72 20 chr1 4915967 4916119 -237748234 - L2 LINE L2 -75 3238 3079 349 292 0 0 chr1 4916706 4916802 -237747551 + (TG)n Simple_repeat Simple_repeat 1 96 0 317 315 11 28 chr1 4916951 4917129 -237747224 + GA-rich Low_complexity Low_complexity 3 177 0 1502 219 114 6 chr1 4917879 4918066 -237746287 - MLT1B LTR MaLR 0 390 225 222 37 0 0 chr1 4918066 4918093 -237746260 + (GA)n Simple_repeat Simple_repeat 2 28 0 1502 219 114 6 chr1 4918093 4918257 -237746096 - MLT1B LTR MaLR -165 225 1 199 354 50 0 chr1 4918317 4918416 -237745937 + MIR SINE MIR 37 140 -68 237 309 112 59 chr1 4919748 4919900 -237744453 - MER5B DNA MER1_type -2 176 17 744 296 21 0 chr1 4919962 4920202 -237744151 + MIR SINE MIR 16 260 -2 720 175 0 22 chr1 4920221 4920404 -237743949 + (CAT)n Simple_repeat Simple_repeat 1 179 0 636 170 38 31 chr1 4920395 4920716 -237743637 + (CACCAT)n Simple_repeat Simple_repeat 1 323 0 * 3317 130 2 2 chr1 4920817 4921770 -237742583 - L1P4 LINE L1 -382 5783 4831 661 153 8 15 chr1 4921770 4921901 -237742452 - MLT1A1 LTR MaLR -235 130 1 194 304 18 0 chr1 4922394 4922450 -237741903 - MIR SINE MIR -89 173 117 769 244 96 46 chr1 4922551 4922863 -237741490 - MLT1C LTR MaLR -6 587 122 1999 113 0 20 chr1 4922863 4923164 -237741189 - AluSx SINE Alu 0 312 18 769 244 96 46 chr1 4923164 4923207 -237741146 - MLT1C LTR MaLR -471 122 83 444 293 57 0 chr1 4924148 4924288 -237740065 + MIR SINE MIR 109 256 -6 339 291 29 0 chr1 4924621 4924724 -237739629 + MIR SINE MIR 36 141 -67 388 263 51 0 chr1 4924758 4924876 -237739477 + MER117 DNA MER1_type 69 192 -5 2162 81 3 3 chr1 4925107 4925415 -237738938 - AluSx SINE Alu 0 308 1 1777 172 53 42 chr1 4925430 4925791 -237738562 + MLT1A1 LTR MaLR 1 365 0 2542 159 29 31 chr1 5026484 5026988 -237637365 + MER41B LTR ERV1 140 478 0 4712 66 5 0 chr1 5027817 5028405 -237635948 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr1 5028684 5028706 -237635647 + (CA)n Simple_repeat Simple_repeat 2 23 0 242 315 45 0 chr1 5031999 5032110 -237632243 + MIR SINE MIR 113 228 -34 740 247 18 12 chr1 5032385 5032555 -237631798 - MER45A DNA AcHobo 0 178 8 205 267 56 22 chr1 5032638 5032728 -237631625 - MIR SINE MIR -81 181 89 290 274 235 6 chr1 5032873 5033052 -237631301 + MIR SINE MIR 12 231 -31 208 106 21 85 chr1 5033385 5033432 -237630921 + L2 LINE L2 3199 3242 -71 284 118 20 0 chr1 5033434 5033485 -237630868 + MADE1 DNA Mariner 2 53 -27 308 91 127 18 chr1 5033497 5033552 -237630801 + L2 LINE L2 3246 3306 -7 1832 170 5 86 chr1 5033827 5034063 -237630290 - MLT1A1 LTR MaLR -2 363 170 2032 139 7 3 chr1 5034063 5034350 -237630003 - AluSx SINE Alu -24 288 1 1832 170 5 86 chr1 5034350 5034508 -237629845 - MLT1A1 LTR MaLR -195 170 1 2351 134 20 3 chr1 5034607 5034965 -237629388 - THE1B LTR MaLR 0 364 1 1966 177 65 58 chr1 5035157 5035621 -237628732 + MLT1C LTR MaLR 1 467 0 791 275 31 64 chr1 5035625 5035952 -237628401 + MLT1I LTR MaLR 1 316 -93 3371 56 0 77 chr1 5035963 5036003 -237628350 - MLT2A1 LTR ERVL 0 444 403 183 80 0 0 chr1 5036003 5036028 -237628325 + (TA)n Simple_repeat Simple_repeat 2 26 0 3371 56 0 77 chr1 5036028 5036061 -237628292 - MLT2A1 LTR ERVL -41 403 369 252 0 0 0 chr1 5036061 5036089 -237628264 + (TC)n Simple_repeat Simple_repeat 2 29 0 3371 56 0 77 chr1 5036089 5036495 -237627858 - MLT2A1 LTR ERVL -75 369 1 2100 58 11 0 chr1 5036495 5036773 -237627580 - HERVL-A1 LTR ERVL 0 5654 5374 1160 236 45 62 chr1 5038060 5038579 -237625774 + MLT1E3 LTR MaLR 3 601 -23 1511 163 83 18 chr1 5038604 5038880 -237625473 - AluJb SINE Alu -18 294 1 2116 146 42 22 chr1 5039862 5040219 -237624134 - THE1B LTR MaLR 0 364 1 10086 109 82 9 chr1 5040219 5041692 -237622661 - THE1B-int LTR MaLR 0 1580 1 2169 132 36 33 chr1 5041692 5042055 -237622298 - THE1B LTR MaLR 0 364 1 2637 207 100 12 chr1 5042118 5042718 -237621635 + MLT1E1 LTR MaLR 2 654 0 2353 192 65 73 chr1 5042801 5043447 -237620906 - LTR48B LTR ERV1 0 644 4 8228 198 40 42 chr1 5043546 5045966 -237618387 - LTR48B-int LTR ERV1 -159 6172 3712 522 239 0 35 chr1 5046236 5046436 -237617917 - LTR48B-int LTR ERV1 -2378 2493 1745 499 191 9 0 chr1 5046623 5046728 -237617625 - LTR48B-int LTR ERV1 -2878 3453 3348 1983 168 52 5 chr1 5046805 5047174 -237617179 - LTR48B-int LTR ERV1 -2991 3340 2955 5013 201 113 118 chr1 5047207 5047469 -237616884 - LTR48B-int LTR ERV1 -4228 2103 1841 1552 82 5 0 chr1 5047469 5047675 -237616678 - L1PA7 LINE L1 -8 6146 5940 5013 201 113 118 chr1 5047675 5048327 -237616026 - LTR48B-int LTR ERV1 -4490 1841 1187 234 235 59 59 chr1 5048327 5048395 -237615958 - tRNA-Glu-GAG tRNA tRNA -1 74 7 5013 201 113 118 chr1 5048395 5049523 -237614830 - LTR48B-int LTR ERV1 -5144 1187 3 2576 176 37 82 chr1 5049528 5050200 -237614153 - LTR48B LTR ERV1 -1 643 2 302 153 17 0 chr1 5050260 5050319 -237614034 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 376 136 17 0 chr1 5050322 5050381 -237613972 - MLT1E1 LTR MaLR -422 232 173 242 186 114 0 chr1 5050483 5050553 -237613800 - MLT1E1 LTR MaLR -482 172 95 218 257 257 28 chr1 5050792 5050936 -237613417 + MIR SINE MIR 51 227 -35 482 315 67 44 chr1 5052059 5052329 -237612024 - MLT1K LTR MaLR -4 584 309 261 336 171 9 chr1 5052414 5052625 -237611728 + MIR SINE MIR 8 252 -10 189 0 0 0 chr1 5053036 5053057 -237611296 + (CATTG)n Simple_repeat Simple_repeat 5 25 0 315 298 35 18 chr1 5053397 5053511 -237610842 + MIR SINE MIR 90 205 -57 180 125 0 0 chr1 5053602 5053634 -237610719 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 256 330 21 0 chr1 5054089 5054186 -237610167 + MIR SINE MIR 78 176 -86 206 183 0 17 chr1 5054263 5054301 -237610052 + CT-rich Low_complexity Low_complexity 2 40 -20 2419 112 94 5 chr1 5054301 5054694 -237609659 + MSTA LTR MaLR 1 428 0 206 183 0 17 chr1 5054694 5054715 -237609638 + CT-rich Low_complexity Low_complexity 40 60 0 317 157 0 0 chr1 5055999 5056050 -237608303 - MLT2F LTR ERVL 0 663 613 264 245 0 31 chr1 5056054 5056152 -237608201 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 244 163 12 105 chr1 5056152 5056172 -237608181 - MADE1 DNA Mariner 0 80 60 216 0 0 0 chr1 5056172 5056196 -237608157 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 244 163 12 105 chr1 5056196 5056219 -237608134 - MADE1 DNA Mariner -20 60 36 2279 107 3 0 chr1 5056219 5056519 -237607834 + AluSp SINE Alu 1 301 -12 244 163 12 105 chr1 5056519 5056560 -237607793 - MADE1 DNA Mariner -44 36 3 410 285 6 6 chr1 5056562 5056741 -237607612 + (TA)n Simple_repeat Simple_repeat 2 180 0 1702 194 94 11 chr1 5056745 5057106 -237607247 + MSTD LTR MaLR 3 393 -3 279 315 0 0 chr1 5057202 5057345 -237607008 + (TA)n Simple_repeat Simple_repeat 1 143 0 1488 242 24 11 chr1 5057345 5057717 -237606636 - MLT2C1 LTR ERVL -20 377 1 2152 230 63 8 chr1 5057985 5058464 -237605889 - MER70B LTR ERVL -73 505 1 2721 96 6 3 chr1 5058501 5058864 -237605489 + THE1B LTR MaLR 1 364 0 10912 96 34 34 chr1 5058865 5060444 -237603909 + THE1B-int LTR MaLR 2 1580 0 2325 125 17 8 chr1 5060446 5060805 -237603548 + THE1B LTR MaLR 3 364 0 7309 52 0 0 chr1 5060828 5061807 -237602546 - L1PA5 LINE L1 0 6154 5175 33506 59 1 3 chr1 5061818 5065138 -237599215 - L1PA4 LINE L1 0 6155 2851 2473 78 0 3 chr1 5065138 5065447 -237598906 - AluY SINE Alu -3 308 1 33506 59 1 3 chr1 5065447 5068293 -237596060 - L1PA4 LINE L1 -3304 2851 1 225 258 296 9 chr1 5068308 5068420 -237595933 - MIR SINE MIR -113 149 14 239 364 0 0 chr1 5068503 5068580 -237595773 + MIR SINE MIR 71 147 -61 569 233 0 6 chr1 5069355 5069535 -237594818 + CT-rich Low_complexity Low_complexity 2 180 0 332 255 59 10 chr1 5071001 5071103 -237593250 - MIR SINE MIR -72 190 84 2034 176 50 31 chr1 5071191 5071612 -237592741 + MLT1C LTR MaLR 2 430 -37 438 173 27 13 chr1 5072520 5072670 -237591683 + (CA)n Simple_repeat Simple_repeat 2 153 0 192 200 0 0 chr1 5073938 5073978 -237590375 + CT-rich Low_complexity Low_complexity 1 40 0 872 235 38 17 chr1 5075314 5075542 -237588811 - MLT1A1 LTR MaLR 0 365 133 1822 175 71 76 chr1 5075542 5075922 -237588431 - MSTB1 LTR MaLR 0 432 53 7210 58 0 2 chr1 5075922 5077152 -237587201 - L1PA6 LINE L1 0 6154 4923 1822 175 71 76 chr1 5077152 5077205 -237587148 - MSTB1 LTR MaLR -379 53 1 837 131 15 7 chr1 5077205 5077341 -237587012 - MLT1A1 LTR MaLR -225 140 4 2406 113 34 6 chr1 5078513 5078866 -237585487 + THE1B LTR MaLR 1 363 -1 2471 129 60 27 chr1 5079456 5079968 -237584385 + MLT2A2 LTR ERVL 3 554 0 581 320 41 5 chr1 5081417 5081614 -237582739 + MIR SINE MIR 23 226 -36 21 36 0 0 chr1 5081662 5081690 -237582663 + AT_rich Low_complexity Low_complexity 1 28 0 350 269 77 47 chr1 5083101 5083409 -237580944 + L1MC/D LINE L1 5290 5597 -899 263 388 13 40 chr1 5083494 5083646 -237580707 - MIR SINE MIR -81 181 34 1863 243 67 47 chr1 5083848 5084968 -237579385 + HAL1 LINE L1 25 1200 -1307 1027 195 25 66 chr1 5085044 5085285 -237579068 - MIR SINE MIR -29 233 3 1679 244 69 103 chr1 5085311 5086345 -237578008 + HAL1 LINE L1 1280 2275 -232 2016 125 14 0 chr1 5086345 5086642 -237577711 + AluSg SINE Alu 1 301 -9 1679 244 69 103 chr1 5086642 5086714 -237577639 + HAL1 LINE L1 2275 2348 -159 410 92 0 0 chr1 5087190 5087255 -237577098 + L1PA7 LINE L1 6090 6154 0 324 175 12 12 chr1 5087271 5087351 -237577002 + HAL1 LINE L1 2316 2395 -112 5632 105 8 5 chr1 5087418 5088216 -237576137 - L1PA13 LINE L1 -2 6161 5362 1291 184 23 13 chr1 5088216 5088525 -237575828 + L1P LINE L1 3064 3375 -2771 236 246 18 0 chr1 5088517 5088574 -237575779 + HAL1 LINE L1 2440 2497 -10 * 233 282 163 19 chr1 5088606 5088815 -237575538 + L1ME4a LINE L1 5815 6053 -68 1989 161 33 41 chr1 5089319 5089686 -237574667 - THE1B LTR MaLR 0 364 1 680 299 30 5 chr1 5089964 5090165 -237574188 - MER63A DNA MER1_type -4 206 1 234 264 42 14 chr1 5090979 5091051 -237573302 - L2 LINE L2 -5 3308 3235 217 243 70 87 chr1 5091145 5091330 -237573023 + L2 LINE L2 2833 3014 -299 1788 197 8 31 chr1 5092010 5092366 -237571987 - MSTD LTR MaLR -48 348 1 1772 246 59 17 chr1 5092375 5092952 -237571401 + L1ME2 LINE L1 5318 5918 -246 394 294 92 20 chr1 5093076 5093133 -237571220 + MLT1H LTR MaLR 23 74 -335 552 113 0 0 chr1 5093133 5093213 -237571140 - MADE1 DNA Mariner 0 80 1 394 294 92 20 chr1 5093213 5093410 -237570943 + MLT1H LTR MaLR 74 269 -140 309 308 77 8 chr1 5093447 5093577 -237570776 + MLT1H LTR MaLR 411 549 0 1988 118 16 3 chr1 5094112 5094418 -237569935 + AluY SINE Alu 2 311 0 2030 181 20 45 chr1 5094547 5094999 -237569354 + L1MB3 LINE L1 5740 6179 -4 2073 110 10 0 chr1 5095031 5095323 -237569030 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr1 5096383 5096405 -237567948 + (CA)n Simple_repeat Simple_repeat 2 23 0 1812 182 20 47 chr1 5096968 5097157 -237567196 + MLT1B LTR MaLR 1 194 -196 2055 121 0 0 chr1 5097157 5097454 -237566899 + AluSg1 SINE Alu 1 297 -12 1812 182 20 47 chr1 5097454 5097665 -237566688 + MLT1B LTR MaLR 194 390 0 1902 146 58 28 chr1 5098663 5099027 -237565326 + THE1C LTR MaLR 1 375 0 1682 200 104 0 chr1 5100315 5100660 -237563693 - MLT1B LTR MaLR 0 390 10 353 303 35 21 chr1 5100792 5100937 -237563416 + L2 LINE L2 3126 3272 0 2154 142 27 33 chr1 5101929 5102295 -237562058 - THE1B LTR MaLR 0 364 1 11890 95 6 1 chr1 5102295 5103867 -237560486 - THE1B-int LTR MaLR 0 1580 1 2129 144 31 11 chr1 5103867 5104222 -237560131 - THE1B LTR MaLR 0 364 3 336 282 162 7 chr1 5104227 5104369 -237559984 + MIR SINE MIR 85 248 -14 25 0 0 0 chr1 5105050 5105075 -237559278 + AT_rich Low_complexity Low_complexity 1 25 0 1251 58 0 0 chr1 5105099 5105253 -237559100 - L1PA8 LINE L1 -6 6166 6013 260 308 47 18 chr1 5105720 5105889 -237558464 - L1MEd LINE L1 -4863 1256 1083 26 0 0 0 chr1 5106080 5106106 -237558247 + AT_rich Low_complexity Low_complexity 1 26 0 211 105 0 88 chr1 5106457 5106514 -237557839 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2455 125 22 5 chr1 5106947 5107316 -237557037 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr1 5107707 5107732 -237556621 + AT_rich Low_complexity Low_complexity 1 25 0 2219 108 3 0 chr1 5107760 5108067 -237556286 + AluSc SINE Alu 1 308 -1 2022 191 3 6 chr1 5108092 5108448 -237555905 - MLT1A1 LTR MaLR -7 358 4 450 261 48 107 chr1 5110030 5110209 -237554144 - MIR SINE MIR -3 259 100 2171 116 0 0 chr1 5110209 5110512 -237553841 + AluSg SINE Alu 1 303 -7 450 261 48 107 chr1 5110512 5110604 -237553749 - MIR SINE MIR -162 100 4 1434 254 144 39 chr1 5111159 5111824 -237552529 - MER21B LTR ERV1 -125 738 4 1210 200 57 83 chr1 5112721 5113071 -237551282 - MLT1A2 LTR MaLR -33 341 1 1966 129 3 3 chr1 5113352 5113654 -237550699 - AluSx SINE Alu -10 302 1 2033 202 57 9 chr1 5114756 5115196 -237549157 - MLT1C LTR MaLR -6 461 1 388 316 111 22 chr1 5115924 5116359 -237547994 + L1ME4a LINE L1 5442 5918 -203 303 249 32 56 chr1 5116367 5116599 -237547754 + HAL1b LINE L1 1190 1307 -41 681 199 0 0 chr1 5116977 5117153 -237547200 + (TG)n Simple_repeat Simple_repeat 1 176 0 21 0 0 0 chr1 5117283 5117304 -237547049 + AT_rich Low_complexity Low_complexity 1 21 0 238 216 0 20 chr1 5117779 5117830 -237546523 + (TG)n Simple_repeat Simple_repeat 1 50 0 1474 242 59 47 chr1 5118815 5119085 -237545268 + MLT1D LTR MaLR 2 267 -238 2385 121 8 22 chr1 5119085 5119450 -237544903 - THE1B LTR MaLR -4 360 1 11474 100 20 4 chr1 5119450 5121005 -237543348 - THE1B-int LTR MaLR 0 1580 1 2343 137 8 14 chr1 5121005 5121371 -237542982 - THE1B LTR MaLR 0 364 1 1474 242 59 47 chr1 5121371 5121593 -237542760 + MLT1D LTR MaLR 266 502 -3 202 143 0 24 chr1 5122780 5122822 -237541531 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 1813 302 3 2 chr1 5123168 5123757 -237540596 + HERVK13 LTR ERVK 1460 2049 -6067 2327 138 24 8 chr1 5123823 5124192 -237540161 - THE1C LTR MaLR 0 375 1 2945 207 22 30 chr1 5125269 5125442 -237538911 + MER77 LTR ERV1 1 174 -489 1633 202 159 43 chr1 5125442 5125908 -237538445 - MLT2B1 LTR ERVL 0 520 1 2945 207 22 30 chr1 5125908 5126265 -237538088 + MER77 LTR ERV1 174 577 -86 2336 100 21 0 chr1 5126265 5126594 -237537759 - L1PA13 LINE L1 -15 6148 5813 2945 207 22 30 chr1 5126594 5126675 -237537678 + MER77 LTR ERV1 577 657 -6 342 300 22 0 chr1 5127460 5127550 -237536803 - MER117 DNA MER1_type 0 197 106 1917 176 29 3 chr1 5127902 5128282 -237536071 + MLT1B LTR MaLR 1 390 0 1749 169 76 10 chr1 5130499 5130863 -237533490 - MLT1B LTR MaLR -1 466 1 2345 88 3 0 chr1 5131367 5131662 -237532691 - AluSq SINE Alu -12 301 6 25 0 0 0 chr1 5131670 5131695 -237532658 + AT_rich Low_complexity Low_complexity 1 25 0 2476 196 9 30 chr1 5131696 5132222 -237532131 - MLT2B2 LTR ERVL 0 515 1 279 0 0 0 chr1 5133130 5133161 -237531192 + (TA)n Simple_repeat Simple_repeat 2 32 0 2391 228 61 32 chr1 5134642 5134708 -237529645 - L1MB7 LINE L1 0 6183 6120 1984 100 3 57 chr1 5134708 5135033 -237529320 + AluSx SINE Alu 1 309 0 2238 90 0 7 chr1 5135033 5135322 -237529031 + AluSg SINE Alu 23 309 -1 2391 228 61 32 chr1 5135322 5135992 -237528361 - L1MB7 LINE L1 -62 6121 5444 237 65 0 0 chr1 5138721 5138752 -237525601 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 688 82 0 45 chr1 5139030 5139140 -237525213 - AluSp/q SINE Alu -5 308 204 251 212 0 15 chr1 5139517 5139583 -237524770 + CT-rich Low_complexity Low_complexity 4 68 0 305 269 65 11 chr1 5139623 5139716 -237524637 - MIR SINE MIR -151 111 14 219 316 77 31 chr1 5140862 5141058 -237523295 - L2 LINE L2 -261 3011 2807 197 338 0 15 chr1 5142347 5142415 -237521938 - MIR SINE MIR -171 91 25 2110 117 158 61 chr1 5143800 5144243 -237520110 - LTR19A LTR ERV1 0 486 1 592 25 37 0 chr1 5144773 5144854 -237519499 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1749 183 0 16 chr1 5145273 5145590 -237518763 - AluJo SINE Alu 0 312 1 4838 127 10 32 chr1 5146413 5147190 -237517163 + MER4D LTR ERV1 4 763 -140 2003 160 3 0 chr1 5147191 5147491 -237516862 + AluSq SINE Alu 1 301 -12 690 125 10 0 chr1 5147495 5147599 -237516754 + AluSg/x SINE Alu 127 231 -81 207 0 0 0 chr1 5147620 5147643 -237516710 + (TG)n Simple_repeat Simple_repeat 2 24 0 253 302 0 0 chr1 5147645 5147731 -237516622 - L1MC4 LINE L1 -1339 6703 6618 1319 112 31 40 chr1 5147731 5147955 -237516398 + MER50 LTR ERV1 207 428 -306 231 109 65 0 chr1 5147946 5147992 -237516361 - LTR66 LTR ERVL -161 449 401 * 762 175 7 35 chr1 5147979 5148095 -237516258 + MER4D LTR ERV1 758 871 -32 2405 162 25 23 chr1 5148095 5148528 -237515825 - MER57B LTR ERV1 0 434 1 762 175 7 35 chr1 5148528 5148554 -237515799 + MER4D LTR ERV1 871 896 -7 4261 133 18 32 chr1 5148732 5149448 -237514905 - MER50 LTR ERV1 -28 706 1 540 250 76 117 chr1 5150512 5151077 -237513276 - LTR48B LTR ERV1 0 542 1 277 306 8 8 chr1 5151079 5151203 -237513150 - L1ME3 LINE L1 -27 6143 6020 3568 112 21 41 chr1 5151229 5151810 -237512543 + LTR24B LTR ERV1 1 569 -7 1589 243 133 39 chr1 5151892 5152110 -237512243 - L1ME3 LINE L1 -208 5962 5766 2491 163 74 0 chr1 5152110 5152545 -237511808 + LTR24 LTR ERV1 1 467 0 1589 243 133 39 chr1 5152545 5152870 -237511483 - L1ME3 LINE L1 -404 5766 5340 2627 130 36 25 chr1 5152870 5153346 -237511007 + MER31A LTR ERV1 5 485 0 1589 243 133 39 chr1 5153346 5153431 -237510922 - L1ME3 LINE L1 -830 5340 5264 1959 190 54 30 chr1 5153444 5153987 -237510366 - MLT2A2 LTR ERVL 0 554 1 5348 81 3 1 chr1 5154141 5154822 -237509531 - LTR8 LTR ERV1 -9 682 1 1666 171 13 17 chr1 5155134 5155432 -237508921 + AluJo SINE Alu 1 297 -15 7673 243 77 43 chr1 5155437 5157866 -237506487 - L1ME1 LINE L1 -5 6230 3885 360 0 0 0 chr1 5157866 5157906 -237506447 + (TG)n Simple_repeat Simple_repeat 2 41 0 7673 243 77 43 chr1 5157906 5159317 -237505036 - L1ME1 LINE L1 -2350 3885 2524 721 241 39 15 chr1 5159317 5159520 -237504833 - MER63A DNA MER1_type -1 209 2 180 0 0 0 chr1 5159521 5159541 -237504812 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7673 243 77 43 chr1 5159541 5159665 -237504688 - L1ME1 LINE L1 -3710 2525 2179 6192 196 31 5 chr1 5159674 5161698 -237502655 - L1MC1 LINE L1 -5 6608 4519 231 36 0 0 chr1 5161698 5161726 -237502627 + (TG)n Simple_repeat Simple_repeat 1 28 0 6192 196 31 5 chr1 5161726 5161845 -237502508 - L1MC1 LINE L1 -2094 4519 4405 1098 183 139 40 chr1 5161846 5162147 -237502206 - L1MC1 LINE L1 -6038 388 58 2855 287 79 45 chr1 5162165 5162517 -237501836 - L1ME1 LINE L1 -4216 2180 1841 2691 93 50 24 chr1 5162517 5162934 -237501419 - MSTA LTR MaLR 0 428 1 2855 287 79 45 chr1 5162934 5164058 -237500295 - L1ME1 LINE L1 -4555 1841 613 1921 168 26 0 chr1 5164058 5164362 -237499991 - AluJo SINE Alu 0 312 1 2855 287 79 45 chr1 5164362 5164928 -237499425 - L1ME1 LINE L1 -5783 613 68 181 328 135 29 chr1 5165058 5165302 -237499051 + L2 LINE L2 2329 2598 -716 2463 168 18 18 chr1 5165609 5166043 -237498310 - Tigger2a DNA MER2_type 0 434 1 242 233 0 122 chr1 5166217 5166307 -237498046 + L2 LINE L2 3235 3313 0 498 359 113 0 chr1 5166381 5166699 -237497654 - L3 LINE CR1 -3 1574 1221 186 349 0 12 chr1 5166753 5166839 -237497514 - MIR SINE MIR -70 192 108 443 244 83 24 chr1 5166870 5167102 -237497251 + MLT1F LTR MaLR 311 537 -5 1219 177 89 86 chr1 5168611 5169006 -237495347 - MSTD LTR MaLR 0 396 1 540 307 12 0 chr1 5171187 5171350 -237493003 + MIR SINE MIR 80 244 -18 213 315 14 0 chr1 5171603 5171676 -237492677 + GA-rich Low_complexity Low_complexity 2 75 0 2213 103 57 14 chr1 5172187 5172536 -237491817 - THE1B LTR MaLR 0 364 1 1561 173 62 64 chr1 5174953 5175420 -237488933 + MLT1C LTR MaLR 2 467 0 687 277 40 0 chr1 5175594 5175796 -237488557 - MER20 DNA MER1_type -9 210 1 1775 174 7 3 chr1 5177083 5177376 -237486977 + AluJo SINE Alu 1 294 -18 778 191 91 0 chr1 5177873 5178072 -237486281 - MER20 DNA MER1_type -2 217 1 204 184 0 0 chr1 5178665 5178714 -237485639 + T-rich Low_complexity Low_complexity 1 49 0 360 0 0 0 chr1 5180258 5180298 -237484055 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 261 0 0 0 chr1 5181398 5181427 -237482926 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 277 308 0 34 chr1 5183827 5183944 -237480409 + CT-rich Low_complexity Low_complexity 4 116 0 388 322 0 0 chr1 5187650 5187740 -237476613 + L1MC4 LINE L1 6614 6703 -1339 * 467 223 46 9 chr1 5187666 5187777 -237476576 - L1MC4 LINE L1 -1337 6985 1978 217 246 15 31 chr1 5187953 5188018 -237476335 + (TG)n Simple_repeat Simple_repeat 1 64 0 213 214 0 0 chr1 5188163 5188205 -237476148 + (TATG)n Simple_repeat Simple_repeat 4 45 0 241 26 53 0 chr1 5188611 5188649 -237475704 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 348 273 45 30 chr1 5189745 5189877 -237474476 + MER5A DNA MER1_type 24 157 -32 269 323 31 23 chr1 5189774 5189904 -237474449 - MER5A DNA MER1_type -41 148 18 * 1535 124 22 0 chr1 5190368 5190593 -237473760 + AluSg/x SINE Alu 81 310 -2 924 226 39 42 chr1 5190819 5191057 -237473296 + L1MB3 LINE L1 5899 6137 -46 2333 81 44 0 chr1 5191057 5191352 -237473001 - AluSx SINE Alu -4 308 1 924 226 39 42 chr1 5191352 5191396 -237472957 + L1MB3 LINE L1 6137 6180 -3 725 77 0 0 chr1 5191787 5191891 -237472462 + AluY SINE Alu 208 311 0 566 51 13 0 chr1 5192565 5192643 -237471710 + (GA)n Simple_repeat Simple_repeat 2 80 0 218 104 0 21 chr1 5193148 5193196 -237471157 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 354 226 38 19 chr1 5194750 5194856 -237469497 + MIR SINE MIR 33 140 -122 270 211 3 0 chr1 5194944 5195010 -237469343 + MIR SINE MIR 86 153 -55 26 50 0 0 chr1 5199110 5199150 -237465203 + AT_rich Low_complexity Low_complexity 1 40 0 941 163 6 0 chr1 5203476 5203654 -237460699 + (ATG)n Simple_repeat Simple_repeat 1 179 0 749 206 9 0 chr1 5203666 5204008 -237460345 + (ATG)n Simple_repeat Simple_repeat 1 345 0 1078 211 9 5 chr1 5204893 5205106 -237459247 - MER58A DNA MER1_type -4 220 7 1132 185 18 21 chr1 5206991 5207274 -237457079 - MLT2B2 LTR ERVL 0 515 277 578 185 28 17 chr1 5207289 5207467 -237456886 + GA-rich Low_complexity Low_complexity 1 180 0 1299 188 4 4 chr1 5207504 5207738 -237456615 - MLT2B2 LTR ERVL -281 234 1 466 237 30 0 chr1 5207981 5208112 -237456241 + MER20 DNA MER1_type 37 171 -48 254 273 231 0 chr1 5208334 5208455 -237455898 - MIR SINE MIR -33 229 81 1573 236 102 18 chr1 5208463 5208916 -237455437 - MER77 LTR ERV1 -7 598 108 843 91 0 0 chr1 5209070 5209191 -237455162 + HERVL-A2 LTR ERVL 5534 5654 0 3155 96 7 20 chr1 5209191 5209650 -237454703 + MLT2A2 LTR ERVL 1 453 0 255 224 75 0 chr1 5210246 5210313 -237454040 + MER58A DNA MER1_type 153 224 0 654 211 0 0 chr1 5210841 5211021 -237453332 + (CA)n Simple_repeat Simple_repeat 1 180 0 2189 99 24 44 chr1 5212512 5212895 -237451458 + THE1C LTR MaLR 1 375 0 2224 135 13 21 chr1 5212983 5213361 -237450992 - THE1C LTR MaLR 0 375 1 366 282 13 39 chr1 5213396 5213552 -237450801 - L2 LINE L2 -1 3312 3161 259 280 8 51 chr1 5213769 5213887 -237450466 + MLT1H LTR MaLR 241 353 -196 285 200 158 42 chr1 5214426 5214521 -237449832 - MER103 DNA DNA -44 122 17 2258 153 10 72 chr1 5215080 5215597 -237448756 + MER31A LTR ERV1 1 485 0 1109 261 59 0 chr1 5216829 5217151 -237447202 - MER58B DNA MER1_type 0 341 1 257 272 60 85 chr1 5217169 5217343 -237447010 + L1MCc LINE L1 1281 1449 -4974 2379 94 3 0 chr1 5217343 5217641 -237446712 + AluSp SINE Alu 1 299 -14 257 272 60 85 chr1 5217641 5217701 -237446652 + L1MCc LINE L1 1449 1509 -4914 24 77 0 0 chr1 5217722 5217774 -237446579 + AT_rich Low_complexity Low_complexity 1 52 0 189 247 54 86 chr1 5217808 5217901 -237446452 + MIR3 SINE MIR 71 160 -48 358 194 10 10 chr1 5218983 5219081 -237445272 + CT-rich Low_complexity Low_complexity 3 100 0 275 299 103 26 chr1 5219606 5219723 -237444630 + L2 LINE L2 3147 3272 0 258 250 0 0 chr1 5220962 5221050 -237443303 + (CA)n Simple_repeat Simple_repeat 1 88 0 297 222 0 0 chr1 5221161 5221260 -237443093 + (CA)n Simple_repeat Simple_repeat 2 100 0 278 344 0 6 chr1 5221313 5221470 -237442883 + (CA)n Simple_repeat Simple_repeat 2 157 0 215 379 35 0 chr1 5221841 5221957 -237442396 - MIR SINE MIR -62 146 27 672 245 38 52 chr1 5222225 5222437 -237441916 - MLT1A1 LTR MaLR -31 334 126 2344 106 0 0 chr1 5222437 5222749 -237441604 - AluSx SINE Alu 0 312 1 2110 116 7 13 chr1 5223197 5223507 -237440846 - AluSx SINE Alu -4 308 1 218 369 131 6 chr1 5223522 5223698 -237440655 - L2 LINE L2 -2071 1243 1046 1126 241 55 40 chr1 5224772 5225225 -237439128 + MLT1C LTR MaLR 7 466 -1 263 257 28 46 chr1 5225233 5225342 -237439011 - MIR SINE MIR -110 152 46 226 328 16 8 chr1 5226399 5226521 -237437832 + (TG)n Simple_repeat Simple_repeat 1 123 0 312 188 0 0 chr1 5226561 5226625 -237437728 + (TG)n Simple_repeat Simple_repeat 1 64 0 222 91 0 0 chr1 5227643 5227676 -237436677 + (TGGA)n Simple_repeat Simple_repeat 2 34 0 2681 233 106 6 chr1 5228705 5229611 -237434742 - L1MC4 LINE L1 -374 7668 6568 886 251 171 6 chr1 5229650 5230001 -237434352 + MLT1C LTR MaLR 53 461 -6 2834 186 16 27 chr1 5230351 5230409 -237433944 - L1MB3 LINE L1 -1 6182 6125 2483 46 0 3 chr1 5230409 5230711 -237433642 - AluY SINE Alu -10 301 1 2834 186 16 27 chr1 5230711 5231201 -237433152 - L1MB3 LINE L1 -58 6125 5640 217 200 0 33 chr1 5231449 5231509 -237432844 + A-rich Low_complexity Low_complexity 2 59 0 315 363 131 2 chr1 5232347 5232758 -237431595 + L2 LINE L2 2511 2974 -340 1778 156 3 29 chr1 5233288 5233603 -237430750 - AluJo SINE Alu -5 307 1 243 338 14 50 chr1 5234487 5234626 -237429727 - L2 LINE L2 0 3313 3180 555 271 90 6 chr1 5235052 5235229 -237429124 - MIR SINE MIR -11 251 60 472 269 66 28 chr1 5236733 5236915 -237427438 + MIR SINE MIR 47 235 -27 288 314 74 16 chr1 5237658 5237779 -237426574 + L2 LINE L2 3145 3272 0 2342 106 0 0 chr1 5239834 5240146 -237424207 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 5240157 5240180 -237424173 + AT_rich Low_complexity Low_complexity 1 23 0 396 223 86 22 chr1 5241255 5241394 -237422959 + MLT1C LTR MaLR 7 154 -313 1200 211 60 3 chr1 5241403 5241701 -237422652 + MLT1B LTR MaLR 5 319 -71 687 241 162 98 chr1 5243064 5243607 -237420746 - MLT1E LTR MaLR -5 588 11 260 225 75 83 chr1 5244465 5244585 -237419768 - MER5A DNA MER1_type -27 162 44 * 296 258 65 21 chr1 5244495 5244588 -237419765 + MER5A DNA MER1_type 64 160 -29 1805 192 41 0 chr1 5245212 5245586 -237418767 + MLT1B LTR MaLR 1 467 0 185 297 187 65 chr1 5247290 5248107 -237416246 + L2 LINE L2 1575 2491 -823 623 255 176 5 chr1 5248398 5248699 -237415654 + MLT1C LTR MaLR 129 495 -10 558 314 73 55 chr1 5248969 5249475 -237414878 + MER20B DNA MER1_type 262 776 -7 210 193 53 18 chr1 5249958 5250015 -237414338 + MIR SINE MIR 20 78 -130 191 406 41 16 chr1 5250585 5250708 -237413645 - MIR SINE MIR -59 203 78 232 326 33 22 chr1 5251505 5251597 -237412756 - MIR3 SINE MIR -21 187 95 2269 105 7 0 chr1 5252434 5252738 -237411615 + AluSc SINE Alu 1 306 -3 509 185 8 0 chr1 5254413 5254532 -237409821 + (CAT)n Simple_repeat Simple_repeat 1 120 0 897 168 0 0 chr1 5254544 5254723 -237409630 + (CAT)n Simple_repeat Simple_repeat 1 179 0 495 325 123 5 chr1 5254736 5254939 -237409414 - MIR SINE MIR 0 262 36 363 366 45 18 chr1 5255413 5255515 -237408838 - MIR SINE MIR 0 262 164 2071 118 10 3 chr1 5255515 5255811 -237408542 - AluSp SINE Alu -15 298 1 363 366 45 18 chr1 5255811 5255932 -237408421 - MIR SINE MIR -98 164 33 265 395 8 8 chr1 5256194 5256318 -237408035 - L3b LINE CR1 -132 1451 1328 206 331 48 28 chr1 5257939 5258084 -237406269 - L3b LINE CR1 -192 1391 1244 216 111 0 0 chr1 5258659 5258695 -237405658 + (TGG)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr1 5259157 5259186 -237405167 + GC_rich Low_complexity Low_complexity 1 29 0 361 308 0 7 chr1 5260678 5260821 -237403532 + (TG)n Simple_repeat Simple_repeat 1 142 0 320 262 6 16 chr1 5260856 5261177 -237403176 + (TG)n Simple_repeat Simple_repeat 1 318 0 343 314 6 6 chr1 5261772 5261944 -237402409 + (CACAC)n Simple_repeat Simple_repeat 5 176 0 2348 83 0 0 chr1 5262949 5263251 -237401102 + AluSc SINE Alu 1 302 -7 1881 271 78 13 chr1 5263259 5263937 -237400416 + L1MB7 LINE L1 5445 6166 -18 1470 279 74 19 chr1 5265154 5265774 -237398579 - L1MC3 LINE L1 -3 7782 7129 306 0 0 0 chr1 5265785 5265819 -237398534 + (A)n Simple_repeat Simple_repeat 1 34 0 1539 15 0 0 chr1 5265838 5266039 -237398314 - L1PA3 LINE L1 -1016 5130 4930 7706 30 1 0 chr1 5266039 5267057 -237397296 + L1PA3 LINE L1 5136 6154 -1 718 174 71 0 chr1 5269490 5269645 -237394708 + MER20 DNA MER1_type 6 171 -48 227 373 25 25 chr1 5269795 5269913 -237394440 + MIR SINE MIR 21 138 -70 342 269 76 70 chr1 5270740 5270911 -237393442 + MER5B DNA MER1_type 2 173 -5 356 356 34 7 chr1 5271276 5271425 -237392928 - MIR SINE MIR 0 262 110 195 286 50 67 chr1 5272556 5272675 -237391678 + L3 LINE CR1 1456 1572 -5 255 385 15 0 chr1 5273486 5273621 -237390732 - MIR SINE MIR -90 172 36 357 304 62 46 chr1 5273751 5273945 -237390408 - L3 LINE CR1 -107 1470 1274 281 294 22 22 chr1 5273947 5274083 -237390270 + (CA)n Simple_repeat Simple_repeat 1 136 0 258 268 12 6 chr1 5274123 5274291 -237390062 + (CA)n Simple_repeat Simple_repeat 2 170 0 296 322 6 40 chr1 5274293 5274470 -237389883 + (CATA)n Simple_repeat Simple_repeat 4 174 0 * 402 321 18 6 chr1 5274376 5274541 -237389812 + (CA)n Simple_repeat Simple_repeat 2 168 0 1546 174 87 3 chr1 5275328 5275673 -237388680 + MLT1B LTR MaLR 1 374 -16 474 189 41 0 chr1 5276069 5276191 -237388162 - MER20 DNA MER1_type -88 131 5 285 312 24 16 chr1 5276671 5276796 -237387557 + L2 LINE L2 3147 3272 0 1211 241 90 6 chr1 5277240 5277605 -237386748 + MSTD LTR MaLR 1 396 0 312 326 137 0 chr1 5278409 5278584 -237385769 - L2 LINE L2 -107 3165 2967 207 205 0 0 chr1 5279015 5279054 -237385299 + MIR SINE MIR 111 149 -113 293 303 151 7 chr1 5280481 5280633 -237383720 + MIR SINE MIR 81 254 -8 232 279 139 0 chr1 5282283 5282362 -237381991 + MIR SINE MIR 111 200 -62 2385 88 3 0 chr1 5282417 5282724 -237381629 - AluSx SINE Alu -4 308 1 273 119 0 0 chr1 5283381 5283423 -237380930 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 191 310 127 28 chr1 5284687 5284835 -237379518 - MIR SINE MIR -64 144 33 487 221 26 19 chr1 5284864 5285004 -237379349 + MLT1C LTR MaLR 358 467 0 197 309 161 0 chr1 5286446 5286527 -237377826 + MIR SINE MIR 50 143 -119 215 243 0 43 chr1 5287172 5287242 -237377111 + CT-rich Low_complexity Low_complexity 1 67 0 621 231 34 8 chr1 5287731 5287915 -237376438 + MER5A DNA MER1_type 1 171 -7 533 333 53 0 chr1 5287938 5288127 -237376226 - MIR SINE MIR -28 234 36 750 198 0 0 chr1 5288283 5288460 -237375893 + (CAT)n Simple_repeat Simple_repeat 3 179 0 294 194 0 0 chr1 5288480 5288547 -237375806 + (CAT)n Simple_repeat Simple_repeat 2 68 0 505 246 127 0 chr1 5289130 5289272 -237375081 + MIR SINE MIR 28 187 -75 290 277 125 23 chr1 5289329 5289458 -237374895 - MIR SINE MIR -56 152 17 1741 186 76 14 chr1 5290749 5290886 -237373467 + MLT1C LTR MaLR 6 133 -334 2054 215 50 45 chr1 5290886 5291362 -237372991 + MLT2B1 LTR ERVL 1 482 -38 396 0 0 0 chr1 5291362 5291406 -237372947 + (CA)n Simple_repeat Simple_repeat 2 45 0 2054 215 50 45 chr1 5291406 5291446 -237372907 + MLT2B1 LTR ERVL 482 520 0 1741 186 76 14 chr1 5291446 5291743 -237372610 + MLT1C LTR MaLR 133 467 0 189 0 0 0 chr1 5291812 5291833 -237372520 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 462 340 82 22 chr1 5291837 5292069 -237372284 - L2 LINE L2 -14 3299 3054 422 267 80 40 chr1 5292212 5292388 -237371965 + MIR SINE MIR 80 262 0 761 219 78 10 chr1 5292419 5292624 -237371729 + MLT1E LTR MaLR 2 220 -373 946 200 73 5 chr1 5292664 5292884 -237371469 + MLT1E LTR MaLR 305 539 -54 2268 90 0 3 chr1 5294041 5294340 -237370013 - AluSx SINE Alu -14 298 1 1645 268 47 21 chr1 5295482 5296016 -237368337 + MER77 LTR ERV1 54 601 -4 530 216 196 0 chr1 5296693 5296846 -237367507 - MER58A DNA MER1_type 0 224 42 245 95 0 24 chr1 5296896 5296938 -237367415 - MER58A DNA MER1_type -25 82 42 216 0 0 0 chr1 5297140 5297164 -237367189 + (T)n Simple_repeat Simple_repeat 1 24 0 366 215 103 0 chr1 5297177 5297284 -237367069 - MER53 DNA DNA -71 118 1 239 321 0 12 chr1 5297780 5297864 -237366489 + GA-rich Low_complexity Low_complexity 2 84 0 1007 220 31 101 chr1 5297923 5298445 -237365908 - MLT1E2 LTR MaLR 0 626 61 2175 116 0 0 chr1 5299819 5300120 -237364233 - AluSx SINE Alu -11 301 1 340 250 103 17 chr1 5301142 5301258 -237363095 - MIR SINE MIR -115 147 22 2377 206 34 9 chr1 5301272 5301545 -237362808 + L1MB5 LINE L1 5637 5902 -272 2166 107 55 30 chr1 5301545 5301908 -237362445 + THE1C LTR MaLR 1 372 -3 2377 206 34 9 chr1 5301908 5302158 -237362195 + L1MB5 LINE L1 5902 6173 -1 403 270 56 27 chr1 5302586 5302744 -237361609 + MIR SINE MIR 51 212 -35 372 88 0 0 chr1 5302827 5302884 -237361469 + (CA)n Simple_repeat Simple_repeat 2 58 0 1999 134 3 0 chr1 5302982 5303274 -237361079 - AluSx SINE Alu -19 293 1 2201 134 24 0 chr1 5303477 5303805 -237360548 + MER1B DNA MER1_type 2 337 0 183 358 154 0 chr1 5305350 5305473 -237358880 + L2 LINE L2 3167 3308 -5 695 254 100 12 chr1 5306979 5307219 -237357134 + MIR SINE MIR 1 261 -1 793 194 0 0 chr1 5307928 5308062 -237356291 + AluJo SINE Alu 1 134 -178 1034 311 50 10 chr1 5308624 5309122 -237355231 + L1MB7 LINE L1 5651 6168 -16 273 29 0 0 chr1 5309126 5309160 -237355193 + (CA)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr1 5309292 5309316 -237355037 + AT_rich Low_complexity Low_complexity 1 24 0 734 257 39 6 chr1 5309646 5309825 -237354528 + MIR SINE MIR 8 192 -70 1371 176 30 62 chr1 5310646 5310965 -237353388 - L1MD1 LINE L1 0 6242 5935 2541 168 8 70 chr1 5310965 5311483 -237352870 - MER66B LTR ERV1 0 486 1 1371 176 30 62 chr1 5311483 5311533 -237352820 - L1MD1 LINE L1 -307 5935 5885 198 0 0 0 chr1 5313473 5313495 -237350858 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr1 5315061 5315083 -237349270 + GC_rich Low_complexity Low_complexity 1 22 0 49 66 0 0 chr1 5315349 5315440 -237348913 + GC_rich Low_complexity Low_complexity 1 91 0 28 29 0 0 chr1 5315888 5315923 -237348430 + GC_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr1 5315936 5315980 -237348373 + GC_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr1 5316027 5316068 -237348285 + GC_rich Low_complexity Low_complexity 1 41 0 31 88 0 0 chr1 5316437 5316517 -237347836 + GC_rich Low_complexity Low_complexity 1 80 0 245 241 25 51 chr1 5316528 5316686 -237347667 + C-rich Low_complexity Low_complexity 3 156 0 259 308 28 9 chr1 5318063 5318170 -237346183 + MIR SINE MIR 36 144 -118 1165 253 82 5 chr1 5318583 5319010 -237345343 - Charlie4a DNA MER1_type -24 484 25 1973 122 0 14 chr1 5319287 5319610 -237344743 - AluSx SINE Alu 0 319 1 225 196 0 0 chr1 5319801 5319847 -237344506 + (CA)n Simple_repeat Simple_repeat 2 47 0 1008 268 36 13 chr1 5322516 5322818 -237341535 - MLT1I LTR MaLR -3 406 98 1328 156 0 0 chr1 5323243 5323467 -237340886 + L1MA4 LINE L1 6072 6295 -5 972 182 0 3 chr1 5323504 5324216 -237340137 + (CCA)n Simple_repeat Simple_repeat 1 709 0 220 329 0 0 chr1 5324607 5324677 -237339676 - MIR SINE MIR -52 210 141 823 279 25 102 chr1 5325254 5325773 -237338580 + MLT1J LTR MaLR 25 503 -8 2066 110 7 0 chr1 5325897 5326189 -237338164 + AluSx SINE Alu 1 294 -18 215 102 0 41 chr1 5327047 5327096 -237337257 + (TTTTTG)n Simple_repeat Simple_repeat 1 47 0 310 337 11 0 chr1 5327114 5327209 -237337144 + MIR SINE MIR 54 149 -59 1459 218 40 37 chr1 5328449 5328829 -237335524 - MLT1B LTR MaLR -9 381 1 693 227 71 15 chr1 5328925 5329123 -237335230 + L1MB7 LINE L1 5654 5862 -322 274 211 0 0 chr1 5329123 5329180 -237335173 + Charlie1 DNA MER1_type 2407 2463 -298 1015 206 45 96 chr1 5329243 5329597 -237334756 + L1MB7 LINE L1 5847 6182 -2 1159 208 16 43 chr1 5329598 5329920 -237334433 + Charlie1 DNA MER1_type 2146 2458 -303 22 0 0 0 chr1 5329980 5330002 -237334351 + AT_rich Low_complexity Low_complexity 1 22 0 224 59 29 0 chr1 5330132 5330166 -237334187 + (ATG)n Simple_repeat Simple_repeat 1 35 0 184 340 0 0 chr1 5330229 5330279 -237334074 - MIR SINE MIR -72 190 141 198 71 0 0 chr1 5330515 5330543 -237333810 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 429 260 57 0 chr1 5330599 5330776 -237333577 + L1M4 LINE L1 5086 5272 -874 191 180 60 0 chr1 5330776 5330826 -237333527 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 319 302 0 8 chr1 5330847 5330976 -237333377 + L1M LINE L1 5288 5415 -747 1778 163 13 0 chr1 5331233 5331580 -237332773 + AluJb SINE Alu 1 342 -615 1820 125 29 11 chr1 5331580 5331710 -237332643 + AluSx SINE Alu 6 132 -180 2007 92 32 35 chr1 5331710 5332024 -237332329 + AluSq SINE Alu 1 313 0 1820 125 29 11 chr1 5332024 5332172 -237332181 + AluSx SINE Alu 132 289 -23 1778 163 13 0 chr1 5332172 5332186 -237332167 + AluJb SINE Alu 342 957 0 189 0 0 0 chr1 5333814 5333835 -237330518 + (A)n Simple_repeat Simple_repeat 1 21 0 733 302 41 16 chr1 5334053 5334295 -237330058 + MIR SINE MIR 2 249 -13 261 242 0 16 chr1 5334717 5334779 -237329574 + CT-rich Low_complexity Low_complexity 1 61 0 223 291 0 0 chr1 5335054 5335109 -237329244 + (TGGG)n Simple_repeat Simple_repeat 1 55 0 1956 127 38 0 chr1 5335348 5335639 -237328714 + AluSx SINE Alu 8 309 -3 1617 213 116 16 chr1 5337112 5337553 -237326800 + MER31A LTR ERV1 1 485 0 328 145 51 96 chr1 5337892 5338265 -237326088 + (CTGTG)n Simple_repeat Simple_repeat 1 356 0 407 5 0 135 chr1 5338289 5338474 -237325879 + (TG)n Simple_repeat Simple_repeat 1 160 0 343 136 60 87 chr1 5338533 5338717 -237325636 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 184 354 41 34 chr1 5338744 5338891 -237325462 - L2 LINE L2 -25 3247 3100 1659 201 93 50 chr1 5338929 5339412 -237324941 + MLT1D LTR MaLR 1 504 -1 777 291 57 10 chr1 5340037 5340333 -237324020 + MER77 LTR ERV1 292 601 -4 225 0 0 0 chr1 5341595 5341620 -237322733 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 903 224 126 32 chr1 5341775 5342261 -237322092 - MLT1E1 LTR MaLR -6 648 1 202 218 55 0 chr1 5342931 5342986 -237321367 - MIR SINE MIR -63 145 88 279 180 0 16 chr1 5342991 5343052 -237321301 - MER53 DNA DNA -2 187 128 265 218 81 11 chr1 5343302 5343389 -237320964 + MER53 DNA DNA 94 186 -3 * 266 219 98 12 chr1 5343319 5343401 -237320952 - MER53 DNA DNA -100 89 1 356 287 43 24 chr1 5344685 5344849 -237319504 + MER63A DNA MER1_type 42 208 -2 209 300 134 69 chr1 5345146 5345423 -237318930 + L2 LINE L2 2978 3272 0 316 319 9 26 chr1 5346236 5346352 -237318001 + MIR SINE MIR 13 126 -136 1906 181 101 15 chr1 5346535 5346933 -237317420 + MER70A LTR ERVL 41 472 0 540 302 123 19 chr1 5347072 5347380 -237316973 + MLT1J2 LTR MaLR 71 410 -40 1847 129 0 7 chr1 5349563 5349842 -237314511 + AluSx SINE Alu 21 297 -15 2385 75 0 3 chr1 5349919 5350224 -237314129 + AluSq SINE Alu 1 304 -9 1925 138 0 0 chr1 5350506 5350834 -237313519 - AluSq SINE Alu 0 328 1 1692 213 75 59 chr1 5351020 5351062 -237313291 - MER114 LTR ERV -13 635 595 1623 184 37 0 chr1 5351062 5351356 -237312997 - AluJb SINE Alu -7 305 1 1692 213 75 59 chr1 5351356 5351937 -237312416 - MER114 LTR ERV -53 595 2 309 274 55 48 chr1 5352089 5352235 -237312118 - L1MCa LINE L1 -4347 2079 1933 2154 108 0 3 chr1 5352263 5352568 -237311785 + AluSq SINE Alu 1 304 -9 354 226 18 113 chr1 5352606 5352774 -237311579 + L1MCa LINE L1 1927 2078 -4348 744 50 0 0 chr1 5352829 5352929 -237311424 + L1PA5 LINE L1 5943 6042 -112 196 51 26 26 chr1 5352936 5352975 -237311378 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 713 259 80 5 chr1 5353105 5353317 -237311036 - L1ME2 LINE L1 0 6164 5937 192 217 17 40 chr1 5354403 5354488 -237309865 + MIR SINE MIR 34 113 -122 263 279 0 0 chr1 5358970 5359038 -237305315 + G-rich Low_complexity Low_complexity 1 68 0 1089 261 37 35 chr1 5360092 5360126 -237304227 + MLT1C LTR MaLR 89 121 -346 1498 179 17 21 chr1 5360126 5360417 -237303936 + AluJo SINE Alu 1 290 -22 1089 261 37 35 chr1 5360417 5360757 -237303596 + MLT1C LTR MaLR 121 464 -3 241 336 0 44 chr1 5360794 5360907 -237303446 + MLT1K LTR MaLR 481 588 0 327 317 122 10 chr1 5361479 5361684 -237302669 - MIR SINE MIR -15 247 20 188 303 84 58 chr1 5361684 5361839 -237302514 - MIR3 SINE MIR -46 162 4 1262 237 121 71 chr1 5362821 5363302 -237301051 + MLT1D LTR MaLR 1 505 0 1921 128 0 21 chr1 5363893 5364218 -237300135 + AluSq SINE Alu 1 319 0 1481 214 54 0 chr1 5364370 5364702 -237299651 + MLT1B LTR MaLR 37 386 -4 1246 313 115 34 chr1 5364839 5365734 -237298619 - L2 LINE L2 -493 2821 1854 4057 163 85 11 chr1 5367089 5367827 -237296526 + MER54B LTR ERVL 1 793 0 220 239 171 11 chr1 5370300 5370388 -237293965 + MIR SINE MIR 31 132 -130 2534 45 0 3 chr1 5371787 5372095 -237292258 - AluY SINE Alu -4 307 1 35 24 0 0 chr1 5372956 5372998 -237291355 + AT_rich Low_complexity Low_complexity 1 42 0 5560 66 8 3 chr1 5373037 5373754 -237290599 - L1PA8 LINE L1 -8 6164 5444 285 246 118 9 chr1 5375579 5375689 -237288664 + L2 LINE L2 3188 3309 -4 211 310 0 0 chr1 5376061 5376119 -237288234 - L2 LINE L2 -17 3296 3239 30 0 0 0 chr1 5376301 5376331 -237288022 + AT_rich Low_complexity Low_complexity 1 30 0 585 203 117 37 chr1 5377312 5377475 -237286878 + MLT1D LTR MaLR 1 176 -329 384 271 102 83 chr1 5378164 5378537 -237285816 - L2 LINE L2 -1 3312 2933 4429 55 62 5 chr1 5379346 5379923 -237284430 + LTR66 LTR ERVL 1 610 0 8302 98 16 11 chr1 5379923 5380807 -237283546 + HERVL66 LTR ERVL 1 894 -3435 2435 58 6 10 chr1 5380807 5381119 -237283234 + AluY SINE Alu 1 311 0 8302 98 16 11 chr1 5381119 5381358 -237282995 + HERVL66 LTR ERVL 894 1130 -3199 2852 75 6 0 chr1 5381358 5381718 -237282635 + HERVL66 LTR ERVL 1436 1797 -2532 * 4876 123 6 20 chr1 5381698 5382412 -237281941 + HERVL66 LTR ERVL 2654 3357 -972 4004 97 7 3 chr1 5382399 5383073 -237281280 + HERVL66 LTR ERVL 3569 4329 0 * 4206 78 40 52 chr1 5383073 5383690 -237280663 + LTR66 LTR ERVL 1 610 0 204 311 62 62 chr1 5386572 5386733 -237277620 - L3 LINE CR1 -7 1570 1410 207 0 0 0 chr1 5386821 5386844 -237277509 + (GA)n Simple_repeat Simple_repeat 1 23 0 1429 173 46 140 chr1 5386975 5387385 -237276968 + MLT2D LTR ERVL 1 365 -49 306 0 0 0 chr1 5387385 5387419 -237276934 + (TA)n Simple_repeat Simple_repeat 2 35 0 1429 173 46 140 chr1 5387419 5387464 -237276889 + MLT2D LTR ERVL 365 413 -1 186 309 154 40 chr1 5387673 5387822 -237276531 + L2 LINE L2 2558 2723 -591 279 0 0 0 chr1 5388184 5388215 -237276138 + (GA)n Simple_repeat Simple_repeat 1 31 0 26 64 0 0 chr1 5388526 5388573 -237275780 + AT_rich Low_complexity Low_complexity 1 47 0 419 276 147 73 chr1 5388618 5388973 -237275380 + LTR67 LTR ERVL 2 382 -175 257 277 53 11 chr1 5389681 5389775 -237274578 + HERVL LTR ERVL 1199 1296 -4358 2163 114 7 0 chr1 5389836 5390142 -237274211 + AluSc SINE Alu 1 308 -1 20469 111 11 14 chr1 5390449 5394411 -237269942 + L1PA8A LINE L1 2183 6131 0 2445 66 0 0 chr1 5395002 5395306 -237269047 + AluY SINE Alu 1 304 -7 641 323 32 18 chr1 5395682 5395967 -237268386 + L2 LINE L2 1852 2140 -1174 388 234 19 0 chr1 5396031 5396138 -237268215 + L2 LINE L2 2005 2113 -1201 440 292 87 0 chr1 5396221 5396382 -237267971 + L2 LINE L2 2106 2280 -1034 904 244 116 0 chr1 5396408 5396683 -237267670 + L2 LINE L2 2235 2541 -773 2050 116 24 0 chr1 5396960 5397254 -237267099 + AluSq SINE Alu 1 301 -12 326 220 207 21 chr1 5397826 5398029 -237266324 + L1MCc LINE L1 1341 1740 -4887 * 1227 243 97 26 chr1 5398009 5398795 -237265558 + L1ME3A LINE L1 5260 6141 -29 662 308 182 12 chr1 5398856 5399496 -237264857 + L2 LINE L2 2556 3309 -4 544 158 30 139 chr1 5399497 5399662 -237264691 - MER103 DNA DNA -12 154 8 215 320 104 50 chr1 5399738 5399960 -237264393 - MIR SINE MIR -16 246 13 845 222 23 54 chr1 5400754 5400975 -237263378 - MER20 DNA MER1_type 0 219 6 191 36 36 0 chr1 5401780 5401808 -237262545 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 771 263 117 4 chr1 5403101 5403375 -237260978 - MER110 LTR ERV1 -14 477 173 2138 159 30 30 chr1 5403389 5403753 -237260600 - THE1B LTR MaLR 0 364 1 274 133 33 67 chr1 5403867 5403927 -237260426 - MER110A LTR ERV1 -330 138 81 878 215 0 6 chr1 5403999 5404157 -237260196 - MIR SINE MIR -85 177 21 193 219 0 0 chr1 5404843 5404884 -237259469 - L2 LINE L2 -556 2758 2718 1793 156 85 16 chr1 5405498 5405863 -237258490 + MLT1B LTR MaLR 1 390 0 2290 78 7 7 chr1 5406504 5406810 -237257543 - AluSq SINE Alu -7 306 1 1927 116 3 10 chr1 5407655 5407947 -237256406 + AluJo SINE Alu 1 290 -22 1788 127 25 38 chr1 5407949 5408265 -237256088 + AluSx SINE Alu 1 312 0 214 209 23 0 chr1 5408470 5408513 -237255840 - L2 LINE L2 -19 3253 3210 759 278 77 78 chr1 5408589 5408828 -237255525 + MLT1G LTR MaLR 15 253 -337 2013 130 3 0 chr1 5408828 5409127 -237255226 + AluSx SINE Alu 10 309 -3 759 278 77 78 chr1 5409127 5409462 -237254891 + MLT1G LTR MaLR 253 588 -2 246 276 0 0 chr1 5410566 5410624 -237253729 + (ATG)n Simple_repeat Simple_repeat 2 59 0 259 290 167 58 chr1 5411861 5412209 -237252144 + L2 LINE L2 2887 3272 0 241 259 37 25 chr1 5412868 5412949 -237251404 + MIR3 SINE MIR 104 185 -23 5405 123 49 8 chr1 5413473 5414332 -237250021 + L1PA16 LINE L1 5273 6166 0 1557 211 65 51 chr1 5414478 5414990 -237249363 - Charlie1b DNA MER1_type -2 521 3 498 221 47 47 chr1 5415049 5415198 -237249155 + MIR SINE MIR 45 193 -69 2493 42 0 6 chr1 5415563 5415876 -237248477 - AluY SINE Alu 0 311 1 192 263 42 76 chr1 5417980 5418098 -237246255 - L2 LINE L2 -219 3053 2940 360 267 34 27 chr1 5418278 5418424 -237245929 - L2 LINE L2 -963 2351 2205 242 272 49 12 chr1 5418636 5418717 -237245636 + L2 LINE L2 3173 3256 -16 2782 82 3 0 chr1 5418764 5419118 -237245235 + THE1A LTR MaLR 1 355 0 180 135 0 0 chr1 5424305 5424342 -237240011 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 269 244 13 13 chr1 5426126 5426204 -237238149 - MLT1K LTR MaLR -27 561 484 210 136 0 0 chr1 5426270 5426314 -237238039 + (TC)n Simple_repeat Simple_repeat 2 45 0 308 299 134 66 chr1 5426326 5426750 -237237603 - L1M4c LINE L1 -5081 1303 851 230 51 51 0 chr1 5426791 5426830 -237237523 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 311 355 24 30 chr1 5427094 5427260 -237237093 - L2 LINE L2 -742 2572 2408 774 123 26 4 chr1 5427349 5427578 -237236775 + (TAGA)n Simple_repeat Simple_repeat 1 234 0 769 98 15 23 chr1 5427708 5427840 -237236513 - MLT1B LTR MaLR -9 381 251 3085 157 51 4 chr1 5428415 5428963 -237235390 + MER7C DNA MER2_type 14 587 -15 336 281 119 19 chr1 5429041 5429201 -237235152 - L1M4 LINE L1 -1034 5112 4937 268 336 51 4 chr1 5429273 5429508 -237234845 - L1M4 LINE L1 -1333 4813 4568 1964 170 0 0 chr1 5429592 5429880 -237234473 - AluJb SINE Alu -20 292 5 241 252 32 89 chr1 5429957 5430080 -237234273 - L1ME3 LINE L1 -78 6084 5969 2051 134 0 7 chr1 5430169 5430468 -237233885 - AluSx SINE Alu -15 297 1 534 309 68 40 chr1 5430549 5430946 -237233407 - L1ME3 LINE L1 -289 5881 5462 1748 190 19 13 chr1 5431060 5431098 -237233255 - L1MB7 LINE L1 -25 6159 6123 2190 122 0 0 chr1 5431098 5431386 -237232967 + AluSx SINE Alu 1 288 -24 243 0 0 0 chr1 5431387 5431414 -237232939 + (CTAAA)n Simple_repeat Simple_repeat 4 30 0 1748 190 19 13 chr1 5431414 5431747 -237232606 - L1MB7 LINE L1 -60 6124 5784 4065 212 87 16 chr1 5431756 5432454 -237231899 - L1ME3 LINE L1 -751 5395 4579 288 0 0 0 chr1 5432454 5432486 -237231867 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 4065 212 87 16 chr1 5432486 5432965 -237231388 - L1ME3 LINE L1 -1567 4579 4135 269 303 62 78 chr1 5432955 5433427 -237230926 - L1M4 LINE L1 -924 5222 4763 * 2024 142 0 37 chr1 5433427 5433751 -237230602 - AluSx SINE Alu 0 312 1 269 303 62 78 chr1 5433751 5433968 -237230385 - L1M4 LINE L1 -1383 4763 4544 2254 128 0 6 chr1 5434175 5434488 -237229865 - AluSq SINE Alu -2 311 1 578 323 54 17 chr1 5434611 5435034 -237229319 - L1MC5 LINE L1 -960 6852 6415 302 184 66 0 chr1 5435268 5435344 -237229009 - L1 LINE L1 -1142 5004 4924 28 29 0 0 chr1 5435365 5435400 -237228953 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 5435534 5435565 -237228788 + AT_rich Low_complexity Low_complexity 1 31 0 2538 213 20 19 chr1 5435565 5436037 -237228316 - L1MD3 LINE L1 0 7995 7520 2722 107 0 6 chr1 5436037 5436403 -237227950 - THE1B LTR MaLR 0 364 1 2538 213 20 19 chr1 5436403 5436521 -237227832 - L1MD3 LINE L1 -475 7520 7404 338 308 0 0 chr1 5436521 5436612 -237227741 - MLT1F1 LTR MaLR -442 125 35 798 128 138 26 chr1 5436615 5436668 -237227685 - L1MD3 LINE L1 -882 7113 7067 192 40 0 0 chr1 5436668 5436693 -237227660 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 798 128 138 26 chr1 5436693 5436834 -237227519 - L1MD3 LINE L1 -928 7067 6897 965 283 114 0 chr1 5436932 5437345 -237227008 - L1MC5 LINE L1 -1919 5889 5430 448 315 28 17 chr1 5437664 5437845 -237226508 - MIR SINE MIR -48 214 32 1603 167 4 4 chr1 5437939 5438184 -237226169 - AluJb SINE Alu -66 246 2 335 352 29 0 chr1 5439112 5439217 -237225136 - MIR SINE MIR -83 179 72 1982 192 5 13 chr1 5439483 5439502 -237224851 - MLT2D LTR ERVL -22 392 374 411 21 0 0 chr1 5439502 5439550 -237224803 + (TG)n Simple_repeat Simple_repeat 1 48 0 1982 192 5 13 chr1 5439550 5439925 -237224428 - MLT2D LTR ERVL -40 374 1 2003 124 6 47 chr1 5440349 5440671 -237223682 - AluSx SINE Alu -3 309 1 2385 89 0 19 chr1 5441916 5442232 -237222121 - AluSg SINE Alu 0 310 1 1073 267 50 11 chr1 5443823 5444182 -237220171 - L1MC4a LINE L1 -1884 5924 5552 2855 233 35 9 chr1 5444722 5445358 -237218995 - MER82 DNA MER2_type 0 653 2 330 353 49 0 chr1 5445709 5445831 -237218522 - L2 LINE L2 -5 3267 3140 693 269 66 0 chr1 5445888 5446085 -237218268 - MER58A DNA MER1_type -14 210 1 283 375 0 0 chr1 5446137 5446233 -237218120 - L2 LINE L2 -224 3048 2953 327 104 0 0 chr1 5446489 5446537 -237217816 + (CAT)n Simple_repeat Simple_repeat 3 50 0 843 225 28 0 chr1 5447056 5447234 -237217119 + MER5A DNA MER1_type 3 185 -4 192 97 0 0 chr1 5448245 5448276 -237216077 + (TC)n Simple_repeat Simple_repeat 1 31 0 333 0 0 0 chr1 5448292 5448329 -237216024 + (GA)n Simple_repeat Simple_repeat 2 38 0 1046 22 22 43 chr1 5448343 5448527 -237215826 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1619 191 70 0 chr1 5448564 5448893 -237215460 - MLT2D LTR ERVL -55 359 8 312 231 32 142 chr1 5448892 5449246 -237215107 + MLT1K LTR MaLR 7 248 -340 * 370 277 54 0 chr1 5449388 5449500 -237214853 + L2 LINE L2 3196 3313 0 1093 226 50 61 chr1 5451832 5452293 -237212060 - MLT1C LTR MaLR -10 457 2 1301 289 12 0 chr1 5454869 5455205 -237209148 + MER58B DNA MER1_type 1 340 -1 594 221 194 46 chr1 5455296 5455621 -237208732 - MLT1C LTR MaLR -61 406 34 297 250 6 11 chr1 5458715 5458895 -237205458 + CT-rich Low_complexity Low_complexity 2 180 0 778 267 5 5 chr1 5459329 5459539 -237204814 - MER58 DNA MER1_type -2184 236 27 477 170 21 17 chr1 5460316 5460493 -237203860 + MER20 DNA MER1_type 3 213 -6 279 0 0 0 chr1 5462122 5462153 -237202200 + (CA)n Simple_repeat Simple_repeat 2 32 0 820 157 7 41 chr1 5462198 5462325 -237202028 + AluJb SINE Alu 159 289 -23 485 31 0 16 chr1 5462325 5462389 -237201964 + (GAAAA)n Simple_repeat Simple_repeat 5 67 0 258 32 0 0 chr1 5462389 5462420 -237201933 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 820 157 7 41 chr1 5462420 5462438 -237201915 + AluJb SINE Alu 287 300 -12 339 25 0 0 chr1 5462642 5462682 -237201671 + (T)n Simple_repeat Simple_repeat 1 40 0 3520 37 105 0 chr1 5462692 5463151 -237201202 - L1PA4 LINE L1 -4 6151 5645 765 191 75 5 chr1 5464167 5464355 -237199998 - L1MB1 LINE L1 -254 5914 5714 651 150 31 10 chr1 5464354 5464547 -237199806 + L1MB1 LINE L1 5923 6168 0 * 265 164 45 60 chr1 5465630 5465697 -237198656 + MER45 DNA AcHobo 24 89 -89 1190 207 171 7 chr1 5465733 5466042 -237198311 - MLT1A1 LTR MaLR 0 365 6 674 241 119 53 chr1 5466593 5466912 -237197441 - L1MC4 LINE L1 -369 7673 7334 1639 174 18 12 chr1 5467049 5467377 -237196976 - MLT1B LTR MaLR -55 335 6 613 284 77 37 chr1 5467388 5467688 -237196665 - L1MC4 LINE L1 -797 7245 6919 2187 127 16 3 chr1 5467688 5467996 -237196357 - AluSx SINE Alu 0 312 1 613 284 77 37 chr1 5467996 5468152 -237196201 - L1MC4 LINE L1 -1123 6919 6771 1584 194 35 58 chr1 5469430 5469807 -237194546 + MLT1A2 LTR MaLR 3 370 -4 200 316 26 0 chr1 5470680 5470756 -237193597 - L2 LINE L2 -945 2369 2292 2973 13 0 0 chr1 5470915 5471231 -237193122 + AluYb8 SINE Alu 1 316 -2 273 319 132 24 chr1 5471416 5471667 -237192686 - L2 LINE L2 -15 3298 3021 1932 115 0 22 chr1 5471982 5472252 -237192101 + AluSx SINE Alu 35 298 -14 1187 265 61 82 chr1 5472784 5472911 -237191442 + MER21B LTR ERV1 60 188 -675 2230 106 3 3 chr1 5472911 5473204 -237191149 - AluSx SINE Alu -19 293 1 1187 265 61 82 chr1 5473204 5473745 -237190608 + MER21B LTR ERV1 188 714 -149 234 0 0 0 chr1 5474309 5474335 -237190018 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 258 32 0 0 chr1 5474334 5474365 -237189988 + (GA)n Simple_repeat Simple_repeat 1 31 0 180 238 0 0 chr1 5474418 5474481 -237189872 + (TG)n Simple_repeat Simple_repeat 1 63 0 182 290 7 0 chr1 5474519 5474657 -237189696 + (TG)n Simple_repeat Simple_repeat 1 139 0 288 258 0 0 chr1 5474723 5474847 -237189506 + (TG)n Simple_repeat Simple_repeat 2 125 0 240 307 0 0 chr1 5474929 5475108 -237189245 + (TG)n Simple_repeat Simple_repeat 2 180 0 243 276 143 0 chr1 5477130 5477228 -237187125 - L2 LINE L2 0 3313 3202 291 316 20 26 chr1 5477528 5477680 -237186673 - L2 LINE L2 -264 3049 2899 388 246 107 0 chr1 5477690 5477809 -237186544 + MLT1D LTR MaLR 7 138 -329 2035 172 36 27 chr1 5477809 5478357 -237185996 - MLT2A2 LTR ERVL 0 554 1 722 227 145 0 chr1 5478470 5478642 -237185711 + MLT1D LTR MaLR 309 505 0 2608 201 77 4 chr1 5478949 5479511 -237184842 - MER77 LTR ERV1 -2 603 1 718 317 189 18 chr1 5479523 5480283 -237184070 - L2 LINE L2 -815 2499 1610 702 210 11 11 chr1 5480326 5480502 -237183851 + MER53 DNA DNA 1 176 -13 596 215 94 54 chr1 5480572 5480795 -237183558 - L2 LINE L2 0 3313 3082 1622 42 12 6 chr1 5480814 5481093 -237183260 + L1P2 LINE L1 5159 5438 -716 568 79 22 0 chr1 5481091 5481180 -237183173 - L1P2 LINE L1 -635 5519 5429 * 275 85 0 0 chr1 5481178 5481225 -237183128 + L1PA3 LINE L1 6109 6155 0 * 302 285 85 72 chr1 5483345 5483580 -237180773 + L2 LINE L2 2855 3092 -180 24 0 0 0 chr1 5483642 5483666 -237180687 + AT_rich Low_complexity Low_complexity 1 24 0 962 209 134 110 chr1 5483682 5484128 -237180225 + MLT1C LTR MaLR 1 457 -10 213 255 138 0 chr1 5484160 5484254 -237180099 + L2 LINE L2 3161 3267 -5 764 174 7 0 chr1 5485187 5485342 -237179011 - L1MB5 LINE L1 -2 6172 6017 199 340 147 0 chr1 5487642 5487798 -237176555 + L2 LINE L2 2999 3177 -95 254 211 84 0 chr1 5489359 5489430 -237174923 + MLT1H1 LTR MaLR 1 77 -478 300 314 31 14 chr1 5489674 5489828 -237174525 + MLT1H1 LTR MaLR 400 554 -1 625 327 66 36 chr1 5490955 5491395 -237172958 - L2 LINE L2 -2 3311 2859 409 341 38 44 chr1 5491406 5491723 -237172630 + L2 LINE L2 2997 3311 -2 192 40 0 0 chr1 5491847 5491872 -237172481 + (CA)n Simple_repeat Simple_repeat 2 26 0 5093 112 38 17 chr1 5491958 5492823 -237171530 + L1PB2 LINE L1 5266 6148 -3 327 347 41 0 chr1 5492835 5492982 -237171371 - MIR SINE MIR -102 160 8 505 294 72 21 chr1 5493148 5493342 -237171011 + MIR SINE MIR 2 205 -57 1390 285 22 22 chr1 5493342 5493795 -237170558 + L1MCc LINE L1 17 469 -5954 1557 259 46 88 chr1 5493885 5494873 -237169480 + L1MCc LINE L1 657 1773 -4848 432 301 20 33 chr1 5495126 5495279 -237169074 - MIR SINE MIR -16 246 96 476 292 7 0 chr1 5495485 5495622 -237168731 - MIR SINE MIR -41 221 84 281 243 81 27 chr1 5495808 5495919 -237168434 + MLT1K LTR MaLR 465 581 -7 26 30 0 0 chr1 5496837 5496870 -237167483 + AT_rich Low_complexity Low_complexity 1 33 0 1894 164 59 16 chr1 5497115 5497486 -237166867 + MLT1B LTR MaLR 1 387 -3 430 267 44 7 chr1 5497916 5498040 -237166313 + MLT1H1 LTR MaLR 1 132 -423 1895 145 37 14 chr1 5498040 5498165 -237166188 + AluSx SINE Alu 1 122 -190 285 51 0 0 chr1 5498165 5498204 -237166149 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1895 145 37 14 chr1 5498204 5498374 -237165979 + AluSx SINE Alu 122 303 -9 978 213 21 28 chr1 5498407 5498735 -237165618 - MLT2B1 LTR ERVL 0 520 149 300 146 0 0 chr1 5498736 5498784 -237165569 - MLT2B1 LTR ERVL -472 48 1 343 266 133 36 chr1 5498785 5499049 -237165304 + MLT1H LTR MaLR 189 539 -10 2364 103 0 0 chr1 5499668 5499968 -237164385 - AluSq SINE Alu -13 300 1 506 235 0 3 chr1 5500021 5500324 -237164029 + (TG)n Simple_repeat Simple_repeat 1 301 0 21 36 0 0 chr1 5500904 5500932 -237163421 + AT_rich Low_complexity Low_complexity 1 28 0 1531 231 56 7 chr1 5502061 5502506 -237161847 + MLT1C LTR MaLR 1 467 0 1181 182 40 16 chr1 5502690 5502943 -237161410 - MLT1B LTR MaLR -21 369 111 2273 102 0 0 chr1 5503109 5503422 -237160931 + AluSx SINE Alu 1 313 0 1833 187 11 125 chr1 5504969 5505318 -237159035 - L1MB8 LINE L1 -1 6177 5790 2403 76 3 10 chr1 5505318 5505619 -237158734 - AluSg SINE Alu -11 299 1 1833 187 11 125 chr1 5505619 5505873 -237158480 - L1MB8 LINE L1 -388 5790 5645 2284 102 36 33 chr1 5505873 5506236 -237158117 - THE1B LTR MaLR 0 364 1 1833 187 11 125 chr1 5506236 5506257 -237158096 - L1MB8 LINE L1 -533 5645 5623 227 222 194 9 chr1 5506949 5507057 -237157296 - L2 LINE L2 -4 3268 3141 1081 225 29 29 chr1 5507253 5507569 -237156784 - LTR53 LTR ERVL 0 519 204 618 297 32 86 chr1 5508799 5509207 -237155146 - L2 LINE L2 -6 3307 2922 24 0 0 0 chr1 5509836 5509860 -237154493 + AT_rich Low_complexity Low_complexity 1 24 0 245 382 89 21 chr1 5511326 5511517 -237152836 - MIR SINE MIR -12 250 47 341 345 72 52 chr1 5511805 5512289 -237152064 - MLT1J LTR MaLR -15 496 3 869 287 6 18 chr1 5512673 5513004 -237151349 + L1ME4a LINE L1 5592 5918 -203 352 258 52 71 chr1 5513033 5513157 -237151196 + MIR SINE MIR 20 142 -120 2249 129 7 0 chr1 5513157 5513460 -237150893 + AluSq SINE Alu 1 305 -8 352 258 52 71 chr1 5513460 5513490 -237150863 + MIR SINE MIR 142 171 -91 189 375 0 29 chr1 5513514 5513618 -237150735 - L3 LINE CR1 -75 1502 1402 1073 157 0 0 chr1 5513687 5513853 -237150500 - FRAM SINE Alu 0 166 1 2175 122 3 0 chr1 5514232 5514526 -237149827 + AluSc SINE Alu 1 295 -14 1809 179 24 3 chr1 5514661 5515002 -237149351 - THE1A LTR MaLR -1 354 7 528 96 0 0 chr1 5515002 5515075 -237149278 - THE1B LTR MaLR -291 73 1 1917 246 17 2 chr1 5515266 5515729 -237148624 + L1MB5 LINE L1 5704 6173 -1 1989 168 0 0 chr1 5515811 5516115 -237148238 - AluJb SINE Alu 0 312 9 204 254 16 32 chr1 5516222 5516285 -237148068 - MIR3 SINE MIR -132 76 15 241 236 22 67 chr1 5516549 5516638 -237147715 - L2 LINE L2 -1 3271 3187 1120 192 27 5 chr1 5517280 5517499 -237146854 - MLT1A1 LTR MaLR 0 365 142 5403 140 3 21 chr1 5517510 5517850 -237146503 - L1MA6 LINE L1 0 6300 5955 2033 132 10 23 chr1 5517850 5518160 -237146193 - AluY SINE Alu -5 306 1 5403 140 3 21 chr1 5518160 5518781 -237145572 - L1MA6 LINE L1 -345 5955 5356 1480 186 11 55 chr1 5518783 5519149 -237145204 + L1 LINE L1 4957 5306 -840 847 178 29 11 chr1 5519157 5519331 -237145022 - MLT1A1 LTR MaLR -188 177 1 1221 211 71 6 chr1 5519538 5519860 -237144493 + MER89 LTR ERV1 208 550 -9 1489 194 19 16 chr1 5520539 5520734 -237143619 + L1MA8 LINE L1 5977 6175 -116 2516 144 16 11 chr1 5520734 5521177 -237143176 - MER65A LTR ERV1 0 445 1 1489 194 19 16 chr1 5521177 5521291 -237143062 + L1MA8 LINE L1 6175 6287 -4 2468 99 0 0 chr1 5521380 5521693 -237142660 - AluSq SINE Alu 0 313 1 301 310 70 14 chr1 5521939 5522081 -237142272 - MIR SINE MIR -43 219 70 1077 152 11 0 chr1 5522196 5522380 -237141973 + L1PA15 LINE L1 5967 6152 -13 21 0 0 0 chr1 5522387 5522408 -237141945 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 5522532 5522553 -237141800 + AT_rich Low_complexity Low_complexity 1 21 0 273 319 21 49 chr1 5523345 5523489 -237140864 - MIR SINE MIR -51 211 72 262 269 0 13 chr1 5523617 5523695 -237140658 - MER58A DNA MER1_type -3 221 145 1930 113 3 24 chr1 5523700 5524053 -237140300 - MER4A LTR ERV1 0 664 261 638 131 0 10 chr1 5524053 5524152 -237140201 - MER4A LTR ERV1 -566 98 1 431 200 16 96 chr1 5524173 5524298 -237140055 - MER58A DNA MER1_type 0 119 5 2570 145 54 2 chr1 5524376 5524838 -237139515 - LTR19A LTR ERV1 0 486 1 324 331 138 37 chr1 5525189 5525485 -237138868 - L2 LINE L2 -84 3188 2863 2283 113 0 0 chr1 5526069 5526371 -237137982 + AluSg SINE Alu 1 302 -8 1183 246 96 46 chr1 5526398 5526919 -237137434 - MLT1E2 LTR MaLR 0 626 80 306 273 29 14 chr1 5526806 5526945 -237137408 - MLT2C1 LTR ERVL -199 198 58 * 184 341 47 24 chr1 5527421 5527506 -237136847 - L2 LINE L2 -542 2772 2686 439 280 86 5 chr1 5527507 5527693 -237136660 + L1MEd LINE L1 2 202 -5917 211 79 79 87 chr1 5527818 5527944 -237136409 + (AGGTG)n Simple_repeat Simple_repeat 1 125 0 326 326 30 68 chr1 5528114 5528431 -237135922 + L1MEd LINE L1 393 753 -5366 334 269 211 27 chr1 5528528 5528751 -237135602 + L2 LINE L2 2247 2510 -804 555 333 83 22 chr1 5529100 5529778 -237134575 + L1MB3 LINE L1 3990 4708 -1438 3103 160 78 66 chr1 5529933 5530616 -237133737 + LTR8 LTR ERV1 1 691 0 444 327 30 49 chr1 5531170 5531436 -237132917 + L1MB3 LINE L1 4973 5233 -913 980 221 0 0 chr1 5531442 5531641 -237132712 - MLT1B LTR MaLR 0 390 192 544 238 60 38 chr1 5532950 5533135 -237131218 + MER69 DNA AcHobo 168 356 -2170 694 177 0 0 chr1 5533135 5533258 -237131095 - MLT1B LTR MaLR 0 390 268 2607 86 77 20 chr1 5533258 5533282 -237131071 + MSTA LTR MaLR 1 22 -406 1934 140 184 11 chr1 5533282 5533647 -237130706 - MSTA LTR MaLR 0 428 1 2607 86 77 20 chr1 5533647 5534027 -237130326 + MSTA LTR MaLR 22 428 0 1337 153 97 0 chr1 5534027 5534275 -237130078 - MLT1B LTR MaLR -118 272 1 587 216 144 10 chr1 5534366 5534574 -237129779 + MER69 DNA AcHobo 2289 2524 -2 198 302 16 16 chr1 5534653 5534716 -237129637 + MIR SINE MIR 198 260 -2 417 226 0 0 chr1 5535194 5535287 -237129066 - L1MA7 LINE L1 -3 6288 6196 792 202 10 52 chr1 5535379 5535572 -237128781 - MER58A DNA MER1_type 0 224 40 2817 190 52 34 chr1 5535572 5536227 -237128126 + L1MB3 LINE L1 5461 6103 -80 2084 144 3 0 chr1 5536227 5536519 -237127834 + AluSx SINE Alu 1 293 -19 2326 90 7 7 chr1 5536522 5536822 -237127531 + AluSx SINE Alu 1 300 -12 2817 190 52 34 chr1 5536822 5536872 -237127481 + L1MB3 LINE L1 6104 6183 0 186 155 36 179 chr1 5537032 5537116 -237127237 - L3 LINE CR1 -1279 298 227 2294 132 3 0 chr1 5539066 5539376 -237124977 - AluSp SINE Alu -2 311 1 289 216 27 14 chr1 5540423 5540497 -237123856 - MLT1I LTR MaLR -27 382 308 1748 185 3 55 chr1 5540920 5541139 -237123214 - MLT1A1 LTR MaLR -6 359 167 959 128 0 0 chr1 5541139 5541272 -237123081 - FLAM_C SINE Alu 0 133 1 1748 185 3 55 chr1 5541272 5541431 -237122922 - MLT1A1 LTR MaLR -198 167 1 2157 249 60 18 chr1 5541619 5542241 -237122112 - MER21B LTR ERV1 -78 785 138 486 190 0 0 chr1 5542367 5542446 -237121907 - MER21B LTR ERV1 -773 90 12 538 231 0 22 chr1 5543039 5543221 -237121132 + (TATG)n Simple_repeat Simple_repeat 3 180 0 237 296 0 0 chr1 5543235 5543333 -237121020 + (TA)n Simple_repeat Simple_repeat 2 99 0 * 490 257 0 22 chr1 5543327 5543510 -237120843 + (TATG)n Simple_repeat Simple_repeat 1 179 0 180 204 27 48 chr1 5543730 5543877 -237120476 + (CATATA)n Simple_repeat Simple_repeat 1 144 0 201 217 0 0 chr1 5544042 5544125 -237120228 + (CA)n Simple_repeat Simple_repeat 1 83 0 215 83 0 83 chr1 5544265 5544313 -237120040 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 315 11 44 chr1 5545121 5545302 -237119051 + (CGGGG)n Simple_repeat Simple_repeat 5 179 0 2019 169 21 3 chr1 5546496 5546833 -237117520 - MER61A LTR ERV1 0 343 1 1105 218 27 27 chr1 5546908 5547206 -237117147 - MLT1C LTR MaLR -4 463 166 508 266 156 0 chr1 5547231 5547423 -237116930 - MER31B LTR ERV1 -25 441 220 567 236 50 0 chr1 5547656 5547796 -237116557 - MLT1C LTR MaLR -240 150 4 254 269 172 59 chr1 5547844 5548234 -237116119 - LTR16A1 LTR ERVL -6 451 18 231 200 0 0 chr1 5548234 5548279 -237116074 + (CAGGG)n Simple_repeat Simple_repeat 4 48 0 26 50 0 0 chr1 5548915 5548955 -237115398 + AT_rich Low_complexity Low_complexity 1 40 0 408 278 0 53 chr1 5550393 5550544 -237113809 + L2 LINE L2 3171 3313 0 528 208 25 0 chr1 5550580 5550700 -237113653 - MLT1D LTR MaLR -8 497 375 1439 138 58 7 chr1 5550704 5550920 -237113433 + MER61D LTR ERV1 1 205 -296 468 0 0 0 chr1 5550920 5550972 -237113381 + (CA)n Simple_repeat Simple_repeat 2 53 0 1439 138 58 7 chr1 5550972 5551161 -237113192 + MER61D LTR ERV1 205 501 0 1293 215 45 53 chr1 5551162 5551538 -237112815 - MLT1D LTR MaLR -132 373 1 188 296 34 80 chr1 5551585 5551673 -237112680 + L2 LINE L2 3185 3268 -4 416 303 92 16 chr1 5551826 5552011 -237112342 - MIR SINE MIR -1 261 63 228 224 0 20 chr1 5552537 5552586 -237111767 + GA-rich Low_complexity Low_complexity 3 50 0 262 353 24 39 chr1 5553471 5553678 -237110675 + L2 LINE L2 3109 3312 -1 1777 159 0 17 chr1 5553879 5554175 -237110178 - AluSx SINE Alu 0 312 22 231 36 0 0 chr1 5554941 5554969 -237109384 + (CA)n Simple_repeat Simple_repeat 1 28 0 1895 160 0 11 chr1 5556332 5556653 -237107700 - AluJb SINE Alu 0 320 3 228 296 78 39 chr1 5556694 5556951 -237107402 + L1MEd LINE L1 1402 1668 -4862 287 304 43 52 chr1 5557021 5557347 -237107006 + HAL1 LINE L1 1424 1746 -761 367 280 158 41 chr1 5557420 5557814 -237106539 + L1MEd LINE L1 2330 3735 -2805 386 282 112 30 chr1 5557878 5558353 -237106000 + L1MEd LINE L1 3276 3789 -2751 21 0 0 0 chr1 5558362 5558383 -237105970 + AT_rich Low_complexity Low_complexity 1 21 0 488 294 46 18 chr1 5558457 5558675 -237105678 + L1MEd LINE L1 3981 4204 -2336 4076 133 13 39 chr1 5558798 5559514 -237104839 + MER50 LTR ERV1 14 710 -24 235 185 19 37 chr1 5559620 5559674 -237104679 + GA-rich Low_complexity Low_complexity 3 55 0 586 309 66 18 chr1 5559780 5560295 -237104058 + L1MEd LINE L1 4523 5062 -1478 2407 122 111 8 chr1 5560358 5560744 -237103609 - MSTB LTR MaLR 0 426 1 492 283 143 12 chr1 5561048 5561299 -237103054 + MLT1J LTR MaLR 226 509 -2 354 292 70 39 chr1 5561327 5561889 -237102464 + L1MEd LINE L1 5297 5879 -727 260 265 147 29 chr1 5561910 5562046 -237102307 - L2 LINE L2 -246 3067 2916 2030 149 3 3 chr1 5563593 5563889 -237100464 + AluSx SINE Alu 3 298 -14 379 356 54 0 chr1 5565222 5565371 -237098982 + MER5B DNA MER1_type 6 162 -16 2295 80 0 0 chr1 5566447 5566761 -237097592 - L1PA8 LINE L1 -286 5886 5573 2332 56 20 0 chr1 5566762 5567064 -237097289 + L1PA8 LINE L1 5863 6170 -2 868 210 28 40 chr1 5567092 5567344 -237097009 - L1MB3 LINE L1 -4 6179 5931 2518 181 89 20 chr1 5567365 5567973 -237096380 - L1MC3 LINE L1 -12 7773 7124 1821 184 10 7 chr1 5568434 5568738 -237095615 + AluJo SINE Alu 1 305 -7 258 101 45 45 chr1 5568920 5569009 -237095344 + (TTTAA)n Simple_repeat Simple_repeat 4 92 0 3765 209 47 19 chr1 5570098 5570901 -237093452 + LTR1B LTR ERV1 1 826 0 560 286 7 0 chr1 5571636 5571783 -237092570 - MER3 DNA MER1_type -61 148 1 354 23 0 0 chr1 5572644 5572687 -237091666 + (CA)n Simple_repeat Simple_repeat 1 43 0 1641 216 29 3 chr1 5575707 5576058 -237088295 - MLT1A1 LTR MaLR 0 365 6 400 176 232 31 chr1 5576909 5577036 -237087317 - L1ME1 LINE L1 0 6334 6024 5342 203 30 31 chr1 5577038 5579277 -237085076 - L1MC1 LINE L1 0 6333 4083 2601 89 47 6 chr1 5579277 5579637 -237084716 - THE1C LTR MaLR 0 375 1 5342 203 30 31 chr1 5579637 5579656 -237084697 - L1MC1 LINE L1 -2250 4083 4065 323 322 131 20 chr1 5580432 5580631 -237083722 + MIR SINE MIR 8 228 -34 2198 171 24 31 chr1 5581450 5581871 -237082482 - MSTB LTR MaLR 0 426 9 283 241 45 62 chr1 5581930 5582042 -237082311 + MIR SINE MIR 34 143 -119 607 327 40 4 chr1 5582186 5582464 -237081889 + MLT1I LTR MaLR 119 406 -3 460 319 48 29 chr1 5582535 5582742 -237081611 + L2 LINE L2 3075 3285 -28 208 333 12 0 chr1 5582749 5582830 -237081523 + (CA)n Simple_repeat Simple_repeat 1 82 0 486 238 38 75 chr1 5582847 5583007 -237081346 - MIR SINE MIR -36 226 73 184 341 91 23 chr1 5583283 5583371 -237080982 + MER5B DNA MER1_type 39 132 -46 871 179 10 51 chr1 5583947 5584143 -237080210 + MLT1C LTR MaLR 1 188 -279 * 1382 181 7 34 chr1 5584142 5584435 -237079918 + MLT1C LTR MaLR 152 436 -31 2117 143 28 33 chr1 5584776 5585139 -237079214 - THE1B LTR MaLR -3 361 1 304 325 85 37 chr1 5585568 5585795 -237078558 + MLT1L LTR MaLR 350 591 -24 2348 134 111 8 chr1 5585795 5586183 -237078170 + MSTA LTR MaLR 1 428 0 304 325 85 37 chr1 5586183 5586201 -237078152 + MLT1L LTR MaLR 591 607 -8 1615 162 61 19 chr1 5586826 5587228 -237077125 - MLT1C LTR MaLR 0 467 8 28 0 0 0 chr1 5587940 5587968 -237076385 + AT_rich Low_complexity Low_complexity 1 28 0 225 227 30 15 chr1 5588050 5588116 -237076237 - MER21B LTR ERV1 -184 679 613 437 250 97 109 chr1 5588117 5588390 -237075963 - MER77 LTR ERV1 -4 601 318 2719 113 0 0 chr1 5588390 5588754 -237075599 + THE1B LTR MaLR 1 364 0 437 250 97 109 chr1 5588754 5589010 -237075343 - MER77 LTR ERV1 -287 318 60 3578 113 22 61 chr1 5589012 5590088 -237074265 + MER11A LTR ERVK 1 1071 0 1861 136 0 0 chr1 5590690 5590941 -237073412 - AluSx SINE Alu -22 290 40 1501 199 62 17 chr1 5591016 5591368 -237072985 + MLT1B LTR MaLR 1 368 -22 336 102 0 0 chr1 5592127 5592176 -237072177 + (TCC)n Simple_repeat Simple_repeat 3 51 0 1612 179 12 52 chr1 5592178 5592503 -237071850 - AluJo SINE Alu 0 312 1 367 310 87 20 chr1 5592506 5592761 -237071592 - L1ME4a LINE L1 -234 5887 5618 191 331 60 46 chr1 5593765 5593916 -237070437 + MIR SINE MIR 10 162 -100 254 194 15 0 chr1 5594459 5594526 -237069827 + CT-rich Low_complexity Low_complexity 4 71 0 262 262 107 0 chr1 5594562 5594665 -237069688 - L1ME2 LINE L1 -10 6154 6041 2162 112 31 3 chr1 5594675 5595011 -237069342 + AluSg SINE Alu 6 349 0 1397 239 55 42 chr1 5595014 5595558 -237068795 - L1ME2 LINE L1 -110 6054 5504 2417 136 63 29 chr1 5595833 5596245 -237068108 + MSTB LTR MaLR 1 426 0 656 315 28 0 chr1 5596354 5596567 -237067786 + MIR SINE MIR 15 233 -29 230 336 77 0 chr1 5596705 5596809 -237067544 + L2 LINE L2 2686 2797 -517 193 274 142 28 chr1 5596953 5597059 -237067294 + L2 LINE L2 2969 3086 -186 185 239 22 0 chr1 5597169 5597215 -237067138 + L2 LINE L2 3265 3311 -2 350 279 6 0 chr1 5597216 5597374 -237066979 + (TGGA)n Simple_repeat Simple_repeat 1 159 0 269 258 17 17 chr1 5597367 5597498 -237066855 + (TGGG)n Simple_repeat Simple_repeat 3 136 -44 * 2112 154 118 26 chr1 5597498 5597888 -237066465 + MSTA LTR MaLR 1 426 -2 269 258 17 17 chr1 5597888 5597934 -237066419 + (TGGG)n Simple_repeat Simple_repeat 135 180 0 801 220 3 7 chr1 5597945 5598254 -237066099 + (TGGA)n Simple_repeat Simple_repeat 1 307 0 489 253 0 0 chr1 5598284 5598446 -237065907 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 432 254 0 27 chr1 5598451 5598561 -237065792 + (TGGG)n Simple_repeat Simple_repeat 2 108 0 187 221 117 0 chr1 5599688 5599765 -237064588 + L2 LINE L2 1639 1724 -1590 1054 165 385 15 chr1 5599765 5600105 -237064248 + MER31B LTR ERV1 1 466 0 1315 314 73 26 chr1 5600106 5600766 -237063587 + L2 LINE L2 1722 2412 -902 513 221 0 19 chr1 5600765 5600869 -237063484 - L2 LINE L2 0 3313 3212 * 507 336 22 18 chr1 5600859 5600949 -237063404 + L2 LINE L2 2397 2485 -829 * 1145 205 14 0 chr1 5600949 5601164 -237063189 + MER20 DNA MER1_type 2 219 0 507 336 22 18 chr1 5601164 5601299 -237063054 + L2 LINE L2 2485 2623 -691 299 202 11 0 chr1 5601427 5601516 -237062837 + (CAT)n Simple_repeat Simple_repeat 2 91 0 730 169 6 12 chr1 5601530 5601702 -237062651 + (CAT)n Simple_repeat Simple_repeat 2 172 0 483 218 11 11 chr1 5601718 5601892 -237062461 + (CAT)n Simple_repeat Simple_repeat 1 174 0 263 194 32 0 chr1 5601902 5601964 -237062389 + (CACCAT)n Simple_repeat Simple_repeat 2 65 0 510 217 18 0 chr1 5601969 5602135 -237062218 + (CAT)n Simple_repeat Simple_repeat 2 170 0 471 206 14 7 chr1 5602163 5602304 -237062049 + (CAT)n Simple_repeat Simple_repeat 2 143 0 466 215 82 138 chr1 5602463 5602658 -237061695 + MIR SINE MIR 30 213 -49 213 269 67 76 chr1 5602623 5602742 -237061611 - MIR3 SINE MIR -7 201 84 * 1686 222 71 5 chr1 5604253 5604676 -237059677 - MLT1C LTR MaLR -16 451 1 1337 232 41 11 chr1 5604955 5605317 -237059036 - MLT1A2 LTR MaLR 0 374 2 24 0 0 0 chr1 5606035 5606059 -237058294 + AT_rich Low_complexity Low_complexity 1 24 0 2372 130 54 2 chr1 5606140 5606361 -237057992 - MSTA LTR MaLR 0 428 220 4249 54 4 2 chr1 5606361 5606881 -237057472 - L1PA6 LINE L1 0 6154 5634 2372 130 54 2 chr1 5606881 5607066 -237057287 - MSTA LTR MaLR -208 220 1 238 343 14 0 chr1 5607075 5607145 -237057208 - L2 LINE L2 0 3313 3243 795 239 123 51 chr1 5607354 5607647 -237056706 - MLT1J LTR MaLR -157 354 41 936 258 65 53 chr1 5609252 5609670 -237054683 - MLT1C LTR MaLR -1 466 44 237 224 17 17 chr1 5610503 5610561 -237053792 + MER5A DNA MER1_type 19 76 -113 * 322 235 37 0 chr1 5610553 5610634 -237053719 - MER5A DNA MER1_type -80 109 26 222 174 0 0 chr1 5611299 5611345 -237053008 + T-rich Low_complexity Low_complexity 1 46 0 207 249 65 60 chr1 5611738 5611834 -237052519 + MIR SINE MIR 65 146 -62 969 270 86 8 chr1 5611963 5612322 -237052031 - MLT1C LTR MaLR -28 439 53 1003 184 50 0 chr1 5613347 5613543 -237050810 - Tigger7 DNA MER2_type 0 2587 2382 2746 104 46 0 chr1 5613543 5613958 -237050395 - LTR1 LTR ERV1 0 785 352 753 165 0 0 chr1 5613963 5614127 -237050226 + CT-rich Low_complexity Low_complexity 1 164 0 325 257 0 55 chr1 5616051 5616160 -237048193 + MIR SINE MIR 40 142 -120 330 320 0 0 chr1 5616380 5616480 -237047873 + MIR SINE MIR 161 260 -2 764 250 85 4 chr1 5616482 5616718 -237047635 - MIR SINE MIR 0 262 8 398 290 10 5 chr1 5617465 5617678 -237046675 + (CA)n Simple_repeat Simple_repeat 1 214 0 591 230 67 12 chr1 5617678 5617843 -237046510 + MLT1C LTR MaLR 287 460 -7 382 246 57 8 chr1 5617855 5617977 -237046376 + MLT1J1 LTR MaLR 248 375 -71 335 206 118 113 chr1 5618522 5618660 -237045693 + LTR50 LTR ERVL 564 700 -95 2557 77 0 0 chr1 5618660 5618971 -237045382 - AluY SINE Alu 0 311 1 2022 132 35 0 chr1 5618971 5619259 -237045094 - AluSp SINE Alu -15 298 1 335 206 118 113 chr1 5619259 5619323 -237045030 + LTR50 LTR ERVL 699 768 -27 251 271 112 48 chr1 5620481 5620669 -237043684 + L2 LINE L2 2466 2665 -649 496 208 101 13 chr1 5620671 5620820 -237043533 + MLT1C LTR MaLR 7 168 -299 5552 54 8 11 chr1 5620908 5621615 -237042738 - L1PA7 LINE L1 0 6154 5450 673 264 67 11 chr1 5621618 5621902 -237042451 + MLT1C LTR MaLR 168 467 0 1785 90 5 0 chr1 5622267 5622489 -237041864 - AluSg/x SINE Alu -13 299 77 241 206 48 0 chr1 5622593 5622656 -237041697 + CT-rich Low_complexity Low_complexity 2 67 0 306 73 0 0 chr1 5622658 5622699 -237041654 + (CA)n Simple_repeat Simple_repeat 2 42 0 458 318 34 0 chr1 5622941 5623120 -237041233 - L1ME LINE L1 -456 5714 5530 299 219 12 61 chr1 5623138 5623220 -237041133 - L2 LINE L2 0 3313 3236 364 364 10 2 chr1 5623242 5623369 -237040984 + MIR SINE MIR 28 154 -54 298 231 0 50 chr1 5623370 5623491 -237040862 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 275 252 191 8 chr1 5623596 5623727 -237040626 + MIR SINE MIR 108 262 0 727 234 11 22 chr1 5623736 5623920 -237040433 - MER90 LTR ERV1 0 614 433 1101 221 204 3 chr1 5624059 5624416 -237039937 - MER90 LTR ERV1 -130 445 17 1797 113 51 90 chr1 5624850 5625240 -237039113 - THE1C LTR MaLR 0 375 1 1366 226 45 25 chr1 5625249 5625697 -237038656 + MLT1C LTR MaLR 1 467 0 370 202 22 22 chr1 5627419 5627508 -237036845 - MER92B LTR ERV1 -2 634 546 1756 224 95 25 chr1 5627760 5628309 -237036044 - MER92B LTR ERV1 -49 587 1 689 360 34 24 chr1 5628364 5628692 -237035661 - HERV16 LTR ERVL -2020 2976 2646 1848 156 0 29 chr1 5629896 5630203 -237034150 + AluJb SINE Alu 1 298 -14 358 318 34 20 chr1 5630466 5630614 -237033739 - MER5A DNA MER1_type -8 181 32 * 508 271 23 8 chr1 5630499 5630632 -237033721 + MER5A DNA MER1_type 55 189 0 203 242 65 0 chr1 5630823 5630885 -237033468 - L2 LINE L2 -6 3266 3201 182 385 8 8 chr1 5631023 5631145 -237033208 + L2 LINE L2 1705 1826 -1488 997 193 42 146 chr1 5631203 5631560 -237032793 - MLT1C LTR MaLR 0 390 71 420 19 0 0 chr1 5631559 5631611 -237032742 + THE1C LTR MaLR 123 174 -201 * 1503 150 62 11 chr1 5632304 5632577 -237031776 - THE1C LTR MaLR 0 375 89 1105 104 37 0 chr1 5632575 5632739 -237031614 - THE1C LTR MaLR -203 172 3 * 482 307 73 0 chr1 5633176 5633381 -237030972 + MIR SINE MIR 14 233 -29 510 270 55 18 chr1 5634240 5634403 -237029950 + MIR SINE MIR 85 253 -9 984 151 0 0 chr1 5634417 5634455 -237029898 + (CAT)n Simple_repeat Simple_repeat 1 217 0 984 151 0 0 chr1 5634455 5634634 -237029719 + (CAT)n Simple_repeat Simple_repeat 1 179 0 962 120 23 0 chr1 5634759 5634934 -237029419 + (CAT)n Simple_repeat Simple_repeat 1 179 0 408 302 50 23 chr1 5635091 5635266 -237029087 - MIR SINE MIR -48 214 34 925 124 0 0 chr1 5636344 5636473 -237027880 - AluSg1 SINE Alu -180 129 1 320 200 294 0 chr1 5636474 5636559 -237027794 - MER3 DNA MER1_type -95 114 5 429 303 12 36 chr1 5636567 5636732 -237027621 + L2 LINE L2 3151 3311 -2 730 274 100 20 chr1 5636921 5637220 -237027133 + MLT1I LTR MaLR 87 409 0 348 83 0 0 chr1 5637446 5637494 -237026859 + (CTATT)n Simple_repeat Simple_repeat 4 51 0 948 146 0 0 chr1 5637496 5637674 -237026679 + (CATTC)n Simple_repeat Simple_repeat 3 180 0 633 186 0 0 chr1 5637675 5637804 -237026549 + (CACTC)n Simple_repeat Simple_repeat 2 130 0 207 0 0 0 chr1 5639079 5639102 -237025251 + (TG)n Simple_repeat Simple_repeat 1 23 0 2138 226 12 53 chr1 5640057 5640562 -237023791 - MER66B LTR ERV1 -2 484 1 2288 130 37 11 chr1 5640715 5641070 -237023283 - THE1B LTR MaLR 0 364 1 230 303 64 9 chr1 5641471 5641580 -237022773 + MIR SINE MIR 133 247 -15 2846 35 15 0 chr1 5643697 5644037 -237020316 + L1PA4 LINE L1 5811 6155 0 274 207 0 0 chr1 5644077 5644135 -237020218 - Charlie5 DNA MER1_type -2522 90 33 1832 133 7 4 chr1 5645683 5645961 -237018392 - AluSx SINE Alu -13 299 21 2418 229 54 57 chr1 5646001 5646210 -237018143 - L1ME2 LINE L1 -9 6155 5947 820 291 43 78 chr1 5646210 5646902 -237017451 - L1MB1 LINE L1 -258 5931 5264 1890 286 52 37 chr1 5646911 5647784 -237016569 - L1ME2 LINE L1 -841 5305 4420 1216 134 259 14 chr1 5647793 5648083 -237016270 - MSTA LTR MaLR -67 361 1 9739 133 32 35 chr1 5648083 5649666 -237014687 - MSTA-int LTR MaLR 0 1580 3 1933 144 174 11 chr1 5649668 5650036 -237014317 - MSTA LTR MaLR 0 428 1 254 261 61 26 chr1 5650087 5650202 -237014151 + MLT1I LTR MaLR 19 137 -272 279 325 103 17 chr1 5650389 5650506 -237013847 + MLT1H LTR MaLR 407 533 -16 339 250 267 30 chr1 5650546 5650842 -237013511 - L2 LINE L2 -974 2340 1975 1803 203 16 18 chr1 5650844 5651228 -237013125 - MER89 LTR ERV1 -2 557 175 194 293 0 0 chr1 5651242 5651300 -237013053 - L2 LINE L2 -1333 1981 1924 349 270 43 74 chr1 5651326 5651556 -237012797 - L2 LINE L2 -1487 1827 1605 1357 214 85 55 chr1 5651600 5652034 -237012319 + MLT1C LTR MaLR 6 452 -15 1178 234 114 91 chr1 5652146 5652841 -237011512 - MER21B LTR ERV1 -130 733 23 991 30 15 0 chr1 5652841 5652972 -237011381 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 210 71 0 0 chr1 5653002 5653030 -237011323 + (CA)n Simple_repeat Simple_repeat 2 29 0 2100 113 0 0 chr1 5653030 5653314 -237011039 - AluSc SINE Alu -22 287 1 348 310 9 9 chr1 5654700 5654813 -237009540 + MER81 DNA DNA 2 114 0 214 316 0 0 chr1 5655028 5655085 -237009268 + (TG)n Simple_repeat Simple_repeat 1 57 0 2755 107 11 5 chr1 5655748 5656121 -237008232 - THE1C LTR MaLR 0 375 1 246 62 0 0 chr1 5657063 5657095 -237007258 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 260 359 17 0 chr1 5657095 5657212 -237007141 - L2 LINE L2 -13 3300 3182 181 318 218 13 chr1 5659330 5659569 -237004784 - L2 LINE L2 -4 3268 2981 1198 198 12 12 chr1 5659677 5659920 -237004433 - AluJo SINE Alu -69 243 1 377 325 49 25 chr1 5659922 5660085 -237004268 + MIR SINE MIR 65 231 -31 420 320 132 48 chr1 5660102 5660352 -237004001 - LTR16A1 LTR ERVL 0 457 187 279 79 0 0 chr1 5660472 5660510 -237003843 + (TA)n Simple_repeat Simple_repeat 2 39 0 2151 101 0 3 chr1 5660510 5660806 -237003547 - AluSx SINE Alu -17 295 1 1739 225 82 7 chr1 5660808 5661257 -237003096 + LTR53 LTR ERVL 23 505 -14 740 76 14 1 chr1 5661453 5661572 -237002781 + MSTA LTR MaLR 1 124 -302 1719 155 115 3 chr1 5661686 5662009 -237002344 + MSTA LTR MaLR 70 428 0 221 319 0 14 chr1 5662738 5662810 -237001543 - L2 LINE L2 -1 3271 3201 895 227 117 80 chr1 5665016 5665478 -236998875 + MLT2B1 LTR ERVL 42 520 0 303 206 33 60 chr1 5666177 5666361 -236997992 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 337 173 29 64 chr1 5666382 5666555 -236997798 + (CACAA)n Simple_repeat Simple_repeat 5 171 0 399 206 41 0 chr1 5666764 5666861 -236997492 + MER89 LTR ERV1 1 101 -458 278 176 0 0 chr1 5667856 5667907 -236996446 + MLT1B LTR MaLR 299 349 -41 307 297 79 44 chr1 5667909 5668138 -236996215 - L2 LINE L2 -1262 2052 1816 198 326 61 10 chr1 5668177 5668275 -236996078 - MIR SINE MIR -109 153 51 257 215 0 31 chr1 5669086 5669151 -236995202 - MIR SINE MIR -107 155 93 242 219 37 0 chr1 5670727 5670809 -236993544 + (ATGGTG)n Simple_repeat Simple_repeat 2 86 0 1013 155 9 4 chr1 5670813 5671294 -236993059 + (ATG)n Simple_repeat Simple_repeat 1 662 0 1361 225 45 51 chr1 5671396 5671845 -236992508 + MER74A LTR ERVL 100 545 -13 324 308 125 47 chr1 5673943 5674407 -236989946 + L2 LINE L2 2233 2732 -582 302 335 30 37 chr1 5674703 5674778 -236989575 + L2 LINE L2 3107 3181 -132 2748 97 8 3 chr1 5674778 5675140 -236989213 + THE1B LTR MaLR 1 364 0 302 335 30 37 chr1 5675140 5675228 -236989125 + L2 LINE L2 3181 3269 -44 1115 132 2 8 chr1 5675247 5675727 -236988626 + (TGGA)n Simple_repeat Simple_repeat 1 477 0 659 207 12 0 chr1 5675741 5675910 -236988443 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 297 302 21 10 chr1 5675982 5676078 -236988275 - MIR SINE MIR -79 183 87 256 265 29 0 chr1 5676576 5676644 -236987709 - MER81 DNA DNA -1 113 44 * 488 247 0 0 chr1 5676643 5676736 -236987617 - MER81 DNA DNA -20 94 2 240 325 42 17 chr1 5677938 5678058 -236986295 - MIR SINE MIR -127 135 13 347 301 83 74 chr1 5678966 5679195 -236985158 - MIR SINE MIR -1 261 31 2213 265 23 5 chr1 5679205 5679821 -236984532 + L1ME3 LINE L1 5529 6155 -7 15459 218 22 7 chr1 5680186 5684576 -236979777 + L1PA13 LINE L1 1179 5663 -1134 478 116 147 0 chr1 5684581 5684676 -236979677 + AluSp/q SINE Alu 203 311 -2 566 337 30 17 chr1 5684688 5685050 -236979303 + L1PA13 LINE L1 5683 6049 -748 1339 123 5 9 chr1 5685264 5685475 -236978878 + L1PA15 LINE L1 5956 6165 0 23 0 0 0 chr1 5685475 5685498 -236978855 + AT_rich Low_complexity Low_complexity 1 23 0 220 271 0 0 chr1 5685610 5685669 -236978684 + (CACCAT)n Simple_repeat Simple_repeat 4 62 0 579 222 149 26 chr1 5685697 5685891 -236978462 + LTR16C LTR ERVL 272 489 -2 181 274 247 0 chr1 5685895 5685968 -236978385 + MIR SINE MIR 162 252 -10 3065 138 7 43 chr1 5686161 5686304 -236978049 - L1PA16 LINE L1 0 6166 6019 351 0 0 0 chr1 5686304 5686343 -236978010 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1645 168 0 34 chr1 5686343 5686635 -236977718 - AluJb SINE Alu -28 284 3 3065 138 7 43 chr1 5686635 5687047 -236977306 - L1PA16 LINE L1 -145 6021 5630 368 324 11 50 chr1 5687203 5687382 -236976971 + MIR SINE MIR 81 252 -10 294 286 52 59 chr1 5688016 5688156 -236976197 + MIR SINE MIR 18 154 -67 2103 119 3 0 chr1 5688164 5688467 -236975886 + AluSp SINE Alu 1 304 -9 664 278 62 73 chr1 5688539 5689021 -236975332 - MLT1J LTR MaLR -23 488 12 257 368 63 17 chr1 5690875 5691049 -236973304 + MIR SINE MIR 47 228 -34 430 279 0 95 chr1 5691411 5691590 -236972763 + MIR SINE MIR 24 185 -77 228 238 111 16 chr1 5691607 5691670 -236972683 + MLT1E LTR MaLR 1 69 -524 377 172 0 0 chr1 5691764 5691822 -236972531 + MLT1E LTR MaLR 81 138 -455 * 1309 204 135 13 chr1 5691813 5692247 -236972106 + MLT1E LTR MaLR 102 593 0 269 269 30 0 chr1 5692248 5692315 -236972038 + MIR SINE MIR 194 262 0 209 303 90 34 chr1 5693758 5693847 -236970506 - L2 LINE L2 -4 3268 3175 234 62 0 0 chr1 5693852 5693884 -236970469 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 243 133 0 0 chr1 5694243 5694288 -236970065 + (CA)n Simple_repeat Simple_repeat 2 46 0 2470 158 8 0 chr1 5694429 5694829 -236969524 - MER57A LTR ERV1 0 403 1 1342 216 102 12 chr1 5695982 5696325 -236968028 - MLT1A2 LTR MaLR 0 374 1 554 267 37 12 chr1 5696384 5696545 -236967808 - MIR SINE MIR -81 181 17 200 188 0 0 chr1 5696842 5696874 -236967479 + (TAAG)n Simple_repeat Simple_repeat 2 33 0 1999 118 7 13 chr1 5696958 5697264 -236967089 + AluSx SINE Alu 1 304 -8 483 107 0 0 chr1 5697271 5697346 -236967007 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 1558 286 94 34 chr1 5697383 5698683 -236965670 + L1ME LINE L1 64 1432 -4648 246 296 17 61 chr1 5698791 5698906 -236965447 - L2 LINE L2 -2 3311 3202 285 214 31 0 chr1 5699378 5699476 -236964877 + GA-rich Low_complexity Low_complexity 3 103 0 516 276 101 59 chr1 5700421 5700849 -236963504 + MLT1K LTR MaLR 167 587 -1 1776 29 0 5 chr1 5701530 5701740 -236962613 - L1PA4 LINE L1 -2 6153 5945 247 257 163 35 chr1 5703293 5703495 -236960858 + LTR33 LTR ERVL 47 274 -247 1521 187 93 12 chr1 5704809 5705146 -236959207 - MSTD LTR MaLR 0 396 30 769 255 32 19 chr1 5705233 5705449 -236958904 + MER20 DNA MER1_type 1 219 0 280 178 41 55 chr1 5705665 5705738 -236958615 + L1ME LINE L1 5536 5607 -563 615 282 96 13 chr1 5705935 5706175 -236958178 + L2 LINE L2 2109 2380 -934 1328 205 46 58 chr1 5706175 5706570 -236957783 + MLT1B LTR MaLR 1 390 0 615 282 96 13 chr1 5706570 5706630 -236957723 + L2 LINE L2 2380 2434 -880 384 254 17 0 chr1 5706690 5706867 -236957486 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 298 315 11 0 chr1 5706871 5706963 -236957390 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 577 216 6 11 chr1 5706964 5707140 -236957213 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 351 0 0 0 chr1 5707228 5707267 -236957086 + (CA)n Simple_repeat Simple_repeat 2 40 0 1011 300 114 15 chr1 5707269 5707865 -236956488 + L2 LINE L2 2498 3150 -163 475 344 74 6 chr1 5707910 5708262 -236956091 + L1MC4a LINE L1 5526 5901 -1907 798 224 15 15 chr1 5708289 5708485 -236955868 + L1MEd LINE L1 258 453 -5919 441 253 0 0 chr1 5708541 5708703 -236955650 + (TG)n Simple_repeat Simple_repeat 1 162 0 764 210 0 34 chr1 5708907 5709083 -236955270 + LTR9B LTR ERV1 392 561 -83 3272 137 0 4 chr1 5709558 5710054 -236954299 + LOR1a LTR ERV1 4 497 0 2592 149 31 2 chr1 5710300 5710716 -236953637 - MSTA LTR MaLR 0 428 1 434 258 223 40 chr1 5710723 5711019 -236953334 + L1MEd LINE L1 1349 1804 -4578 292 277 98 0 chr1 5711365 5711477 -236952876 - MIR3 SINE MIR -45 163 41 2237 127 21 29 chr1 5711875 5712253 -236952100 - THE1C LTR MaLR 0 375 1 10413 131 28 6 chr1 5712253 5713782 -236950571 - THE1C-int LTR MaLR 0 1580 19 1744 147 8 0 chr1 5713786 5714052 -236950301 + THE1C LTR MaLR 108 375 0 945 207 18 0 chr1 5714387 5714551 -236949802 + FAM SINE Alu 3 169 -6 453 216 74 34 chr1 5715064 5715212 -236949141 - MER103 DNA DNA 0 166 13 371 269 75 0 chr1 5715212 5715305 -236949048 - L2 LINE L2 -3 3310 3211 198 320 154 0 chr1 5715387 5715562 -236948791 - L2 LINE L2 -303 3010 2809 207 329 0 0 chr1 5715618 5715694 -236948659 - L2 LINE L2 -12 3301 3226 2564 319 48 15 chr1 5715775 5716852 -236947501 - HERV16 LTR ERVL -1901 3095 2092 23 42 0 21 chr1 5717630 5717656 -236946697 + AT_rich Low_complexity Low_complexity 1 27 -20 2202 97 3 3 chr1 5717656 5717964 -236946389 - AluSp SINE Alu -3 310 3 23 42 0 21 chr1 5717964 5717985 -236946368 + AT_rich Low_complexity Low_complexity 27 47 0 389 318 166 9 chr1 5718008 5718219 -236946134 + MIR SINE MIR 17 260 -2 201 287 161 69 chr1 5718263 5718437 -236945916 - L2 LINE L2 0 3272 3083 2320 157 34 31 chr1 5718441 5718988 -236945365 - MLT2A2 LTR ERVL 0 554 1 204 323 32 0 chr1 5719051 5719113 -236945240 - L2 LINE L2 -560 2754 2691 633 320 92 52 chr1 5719140 5719574 -236944779 + L1MEc LINE L1 55 537 -5859 1930 129 7 26 chr1 5719574 5719876 -236944477 + AluSg SINE Alu 6 301 -9 633 320 92 52 chr1 5719876 5720237 -236944116 + L1MEc LINE L1 537 882 -5514 354 360 35 38 chr1 5720339 5720653 -236943700 + L1 LINE L1 4710 5022 -1124 252 0 0 0 chr1 5720717 5720745 -236943608 + (A)n Simple_repeat Simple_repeat 1 28 0 5499 121 22 2 chr1 5720745 5721785 -236942568 + L1PA15 LINE L1 5021 6078 -87 1806 201 18 18 chr1 5722424 5722807 -236941546 - MER89 LTR ERV1 -2 557 175 203 293 0 0 chr1 5722821 5722879 -236941474 - L2 LINE L2 -1333 1981 1924 347 270 43 74 chr1 5722905 5723135 -236941218 - L2 LINE L2 -1487 1827 1605 881 232 102 68 chr1 5723179 5723563 -236940790 + MLT1C LTR MaLR 6 402 -65 1070 229 218 21 chr1 5724171 5724289 -236940064 - MLT1C LTR MaLR 0 467 374 2092 138 13 45 chr1 5724289 5724526 -236939827 + THE1B LTR MaLR 1 223 -141 2147 109 3 0 chr1 5724526 5724820 -236939533 + AluSp SINE Alu 1 295 -18 2092 138 13 45 chr1 5724820 5724958 -236939395 + THE1B LTR MaLR 223 364 0 1070 229 218 21 chr1 5724958 5725224 -236939129 - MLT1C LTR MaLR -93 374 7 431 232 129 0 chr1 5725434 5725589 -236938764 + MER96 DNA MER1_type 1 175 0 2352 18 0 7 chr1 5725805 5726082 -236938271 - AluYb8 SINE Alu -2 316 42 1980 170 66 28 chr1 5727066 5727598 -236936755 + MLT2A2 LTR ERVL 1 553 -1 920 154 6 0 chr1 5728287 5728462 -236935891 + (CAT)n Simple_repeat Simple_repeat 3 178 0 263 207 37 0 chr1 5728524 5728606 -236935747 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 267 185 0 19 chr1 5730182 5730236 -236934117 + MIR SINE MIR 94 146 -62 204 326 61 10 chr1 5731056 5731154 -236933199 + MIR SINE MIR 51 153 -109 291 297 79 44 chr1 5731193 5731422 -236932931 + L2 LINE L2 1816 2052 -1262 1093 197 14 113 chr1 5731424 5731794 -236932559 - MLT1A2 LTR MaLR -41 333 1 242 295 205 0 chr1 5731855 5732011 -236932342 + MER3 DNA MER1_type 2 189 -20 259 294 78 17 chr1 5732212 5732392 -236931961 + L2 LINE L2 2375 2565 -749 1261 251 99 20 chr1 5732874 5733320 -236931033 - MER89 LTR ERV1 0 559 79 404 206 41 0 chr1 5734283 5734380 -236929973 - MER89 LTR ERV1 -458 101 1 297 200 22 67 chr1 5734572 5734752 -236929601 + (TTGTG)n Simple_repeat Simple_repeat 5 176 0 360 171 40 57 chr1 5734771 5734946 -236929407 + (CTGTG)n Simple_repeat Simple_repeat 3 174 0 322 194 39 56 chr1 5735031 5735211 -236929142 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 809 246 110 75 chr1 5735943 5736426 -236927927 - MLT2B1 LTR ERVL 0 520 21 232 306 0 14 chr1 5738598 5738670 -236925683 + L2 LINE L2 3201 3271 -1 1874 124 61 164 chr1 5739399 5739876 -236924477 - MSTA LTR MaLR 0 428 1 1726 215 97 15 chr1 5740072 5740522 -236923831 - LTR53 LTR ERVL -14 505 93 2129 102 0 3 chr1 5740522 5740816 -236923537 + AluSx SINE Alu 1 293 -19 279 79 0 0 chr1 5740816 5740854 -236923499 + (TA)n Simple_repeat Simple_repeat 2 39 0 1726 215 97 15 chr1 5740854 5740867 -236923486 - LTR53 LTR ERVL -425 94 3 357 320 132 48 chr1 5740974 5741224 -236923129 + LTR16A1 LTR ERVL 187 457 0 383 301 61 37 chr1 5741241 5741404 -236922949 - MIR SINE MIR -31 231 65 439 173 13 0 chr1 5741407 5741482 -236922871 + AluJ/FLAM SINE Alu 2 77 -235 1379 169 4 4 chr1 5741582 5741847 -236922506 + AluJb SINE Alu 40 304 0 1739 219 32 50 chr1 5742085 5742271 -236922082 + MLT1C LTR MaLR 2 190 -277 2161 58 17 17 chr1 5742271 5742562 -236921791 + AluY SINE Alu 1 291 -20 1739 219 32 50 chr1 5742562 5742850 -236921503 + MLT1C LTR MaLR 190 467 0 5584 92 17 1 chr1 5742999 5743781 -236920572 - L1PB1 LINE L1 -6 6145 5352 1386 176 90 14 chr1 5744260 5744563 -236919790 - MER61B LTR ERV1 0 425 1 467 202 53 48 chr1 5744845 5745033 -236919320 - L1M4 LINE L1 -935 5211 5023 572 300 105 76 chr1 5745067 5745411 -236918942 + L1M4 LINE L1 3426 3786 -2360 2129 97 10 0 chr1 5745411 5745701 -236918652 + AluSg SINE Alu 1 293 -17 572 300 105 76 chr1 5745701 5745776 -236918577 + L1M4 LINE L1 3786 3857 -2289 227 262 65 28 chr1 5745792 5745899 -236918454 + L1M2 LINE L1 5352 5462 -838 348 285 95 34 chr1 5745921 5746100 -236918253 + L1ME3A LINE L1 5773 5962 -208 550 167 74 105 chr1 5746216 5746268 -236918085 + L1MB2 LINE L1 6013 6065 -106 1716 145 3 41 chr1 5746268 5746586 -236917767 + AluSq SINE Alu 1 306 -7 550 167 74 105 chr1 5746586 5746695 -236917658 + L1MB2 LINE L1 6065 6169 -2 25 31 0 0 chr1 5746695 5746727 -236917626 + AT_rich Low_complexity Low_complexity 1 32 0 2061 111 21 0 chr1 5747051 5747339 -236917014 + AluSx SINE Alu 1 294 -18 2268 99 0 0 chr1 5748465 5748769 -236915584 - AluSx SINE Alu -8 304 1 3455 129 30 38 chr1 5749139 5749743 -236914610 + MER4A LTR ERV1 1 599 -1 1861 221 47 10 chr1 5749799 5750284 -236914069 - MLT1D LTR MaLR -2 503 1 371 256 144 73 chr1 5750396 5750638 -236913715 - MLT1I LTR MaLR 0 409 129 2129 118 0 0 chr1 5750638 5750935 -236913418 + AluSg1 SINE Alu 1 297 -12 371 256 144 73 chr1 5750935 5751074 -236913279 - MLT1I LTR MaLR -280 129 1 427 276 0 0 chr1 5751899 5751997 -236912356 - MIR SINE MIR -59 203 106 1052 219 38 19 chr1 5752014 5752334 -236912019 + MLT1C LTR MaLR 1 326 -141 575 207 155 1 chr1 5752523 5752652 -236911701 + MLT1C LTR MaLR 347 463 -4 2151 90 3 0 chr1 5753039 5753328 -236911025 - AluSg SINE Alu -20 290 1 1226 234 141 10 chr1 5754260 5754657 -236909696 + MLT1C LTR MaLR 4 452 -15 668 247 69 18 chr1 5754873 5755107 -236909246 - MLT1C LTR MaLR -18 433 202 1282 225 109 44 chr1 5755137 5755568 -236908785 - MLT1C LTR MaLR -8 459 1 414 213 25 65 chr1 5755571 5755742 -236908611 - MLT1C LTR MaLR -346 121 7 489 216 123 43 chr1 5755898 5756060 -236908293 - MER5B DNA MER1_type -3 175 1 292 316 74 0 chr1 5756139 5756234 -236908119 - MIR SINE MIR -72 136 35 342 282 12 0 chr1 5756404 5756668 -236907685 + G-rich Low_complexity Low_complexity 1 267 0 230 263 11 0 chr1 5756679 5756854 -236907499 + G-rich Low_complexity Low_complexity 1 177 0 1331 243 82 14 chr1 5757425 5757862 -236906491 + MLT1C LTR MaLR 1 467 0 401 173 0 27 chr1 5757903 5757978 -236906375 - AluS SINE Alu -240 73 1 1475 148 4 34 chr1 5758276 5758540 -236905813 + AluJb SINE Alu 8 263 -49 515 67 33 11 chr1 5758558 5758648 -236905705 + (GGA)n Simple_repeat Simple_repeat 1 92 0 305 236 99 45 chr1 5758755 5759055 -236905298 + L1MEc LINE L1 1389 1480 -4943 * 729 263 135 16 chr1 5759045 5759634 -236904719 + L1MEc LINE L1 2018 2762 -4181 * 1953 217 39 30 chr1 5759626 5759754 -236904599 + L1M4 LINE L1 3775 3900 -2246 3010 125 7 9 chr1 5759754 5760203 -236904150 + MER83 LTR ERV1 1 448 0 1953 217 39 30 chr1 5760203 5760617 -236903736 + L1M4 LINE L1 3900 4322 -1824 1541 271 11 4 chr1 5761140 5761597 -236902756 + L1MEc LINE L1 4059 4518 -2423 1829 143 118 0 chr1 5761597 5761912 -236902441 - MER47A DNA MER2_type 0 366 15 3138 225 52 55 chr1 5761914 5762873 -236901480 + L1MEc LINE L1 4606 5662 -1384 16828 30 0 1 chr1 5762873 5765628 -236898725 + L1PA3 LINE L1 3389 6152 -3 3138 225 52 55 chr1 5765628 5766269 -236898084 + L1MEc LINE L1 5662 6303 -743 2633 229 53 48 chr1 5766268 5766540 -236897813 + L1ME2 LINE L1 4983 5252 -912 * 225 0 0 0 chr1 5766540 5766565 -236897788 + (TG)n Simple_repeat Simple_repeat 1 25 0 2633 229 53 48 chr1 5766565 5766631 -236897722 + L1ME2 LINE L1 5252 5316 -848 1490 212 123 0 chr1 5766631 5766956 -236897397 - MLT1A1 LTR MaLR 0 365 1 2633 229 53 48 chr1 5766956 5767776 -236896577 + L1ME2 LINE L1 5316 6156 -8 1306 270 68 67 chr1 5767772 5768577 -236895776 + L1ME LINE L1 3480 4283 -1863 * 1921 126 0 4 chr1 5768577 5768855 -236895498 + AluSx SINE Alu 1 277 -35 221 0 35 0 chr1 5768860 5768889 -236895464 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1306 270 68 67 chr1 5768889 5769029 -236895324 + L1ME LINE L1 4286 4432 -1714 21 57 0 0 chr1 5769037 5769072 -236895281 + AT_rich Low_complexity Low_complexity 1 35 0 871 160 43 27 chr1 5769091 5769278 -236895075 - MSTB2 LTR MaLR 0 432 243 1868 201 36 27 chr1 5769285 5769832 -236894521 - MLT2A2 LTR ERVL -8 546 1 1015 142 45 102 chr1 5769832 5770077 -236894276 - MSTB2 LTR MaLR -201 231 1 1283 256 109 40 chr1 5770086 5770703 -236893650 + L1ME LINE L1 4502 5075 -1087 1616 179 14 7 chr1 5770703 5770999 -236893354 + AluJb SINE Alu 1 298 -14 1283 256 109 40 chr1 5770999 5771306 -236893047 + L1ME LINE L1 5075 5507 -655 2794 103 0 5 chr1 5771306 5771683 -236892670 + THE1C LTR MaLR 1 375 0 1283 256 109 40 chr1 5771683 5771739 -236892614 + L1ME LINE L1 5507 5558 -604 273 240 85 39 chr1 5771901 5772030 -236892323 - MLT1J1 LTR MaLR -232 214 80 212 299 11 23 chr1 5772316 5772403 -236891950 + GA-rich Low_complexity Low_complexity 3 88 0 572 317 95 20 chr1 5772462 5773029 -236891324 + L1M4 LINE L1 5283 5897 -277 1806 197 46 3 chr1 5773291 5773641 -236890712 - MLT1A1 LTR MaLR 0 365 1 1991 226 72 36 chr1 5773657 5774219 -236890134 - MLT1A1-int LTR MaLR -14 1721 924 2267 104 57 28 chr1 5774219 5774573 -236889780 - THE1B LTR MaLR 0 364 1 1991 226 72 36 chr1 5774573 5774603 -236889750 - MLT1A1-int LTR MaLR -811 924 897 531 183 78 0 chr1 5774808 5774923 -236889430 - MLT1A1 LTR MaLR 0 365 242 219 258 245 52 chr1 5776601 5776725 -236887628 + MIR SINE MIR 8 148 -71 2224 94 0 7 chr1 5777111 5777419 -236886934 - AluY SINE Alu -5 306 1 1522 290 111 8 chr1 5777442 5778084 -236886269 - L1MC4 LINE L1 0 8042 7335 728 282 146 15 chr1 5778089 5778419 -236885934 - L1MC4 LINE L1 -754 7288 6916 242 294 55 27 chr1 5778450 5778596 -236885757 - L1MC4a LINE L1 -1241 6567 6418 505 132 0 13 chr1 5778598 5778674 -236885679 + AluJ/FLAM SINE Alu 2 76 -236 1660 204 28 26 chr1 5978676 5979064 -236685289 - MLT2C1 LTR ERVL -8 389 1 841 170 0 0 chr1 5979104 5979245 -236685108 - FLAM_C SINE Alu -2 141 1 1954 110 30 43 chr1 5979658 5979959 -236684394 + AluSx SINE Alu 1 297 -15 265 298 46 53 chr1 5980036 5980167 -236684186 - MER5A DNA MER1_type -14 175 46 885 137 82 0 chr1 5980933 5981079 -236683274 + FRAM SINE Alu 8 165 -11 363 169 0 0 chr1 5981085 5981144 -236683209 + AluJ/FLAM SINE Alu 11 69 -233 1988 147 0 6 chr1 5982565 5982879 -236681474 + AluSx SINE Alu 1 312 0 1397 179 81 4 chr1 5984058 5984331 -236680022 + AluJb SINE Alu 1 294 -18 1972 115 0 17 chr1 5984333 5984661 -236679692 + AluSq SINE Alu 1 323 0 2196 99 3 10 chr1 5984902 5985215 -236679138 + AluSx SINE Alu 1 311 -1 180 77 0 0 chr1 5985741 5985767 -236678586 + (A)n Simple_repeat Simple_repeat 1 26 0 2174 101 3 3 chr1 5985884 5986180 -236678173 - AluSq SINE Alu -15 298 3 377 370 29 0 chr1 5986201 5986339 -236678014 - L1MC4 LINE L1 -1334 6708 6567 259 284 12 12 chr1 5986361 5986442 -236677911 + MLT1L LTR MaLR 1 81 -534 476 238 57 0 chr1 5986485 5986607 -236677746 + MLT1L LTR MaLR 163 291 -324 638 281 50 15 chr1 5986647 5986762 -236677591 + MLT1L LTR MaLR 410 536 -79 1596 170 23 13 chr1 5986762 5986936 -236677417 - AluJo SINE Alu -9 303 123 183 42 0 0 chr1 5986936 5986960 -236677393 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 5986960 5987085 -236677268 - AluJo SINE Alu -189 123 1 638 281 50 15 chr1 5987085 5987168 -236677185 + MLT1L LTR MaLR 536 615 0 246 128 0 0 chr1 5988155 5988194 -236676159 + (A)n Simple_repeat Simple_repeat 1 39 0 972 90 0 0 chr1 5989619 5989752 -236674601 + AluSp SINE Alu 1 133 -180 1066 162 5 79 chr1 5990458 5990512 -236673841 + MER20 DNA MER1_type 16 72 -147 2228 118 0 0 chr1 5990512 5990816 -236673537 + AluSx SINE Alu 1 304 -8 1066 162 5 79 chr1 5990816 5990977 -236673376 + MER20 DNA MER1_type 72 215 -4 1480 164 0 82 chr1 5991870 5992052 -236672301 - AluJb SINE Alu -9 303 158 2257 99 0 3 chr1 5992052 5992354 -236671999 - AluSx SINE Alu -10 302 2 1480 164 0 82 chr1 5992354 5992501 -236671852 - AluJb SINE Alu -154 158 1 2158 94 13 3 chr1 5993229 5993538 -236670815 + AluSx SINE Alu 1 312 0 2210 81 7 29 chr1 5993550 5993859 -236670494 + AluSg SINE Alu 1 302 -8 1735 156 30 7 chr1 5994316 5994611 -236669742 + AluJo SINE Alu 1 302 -10 258 105 0 0 chr1 5994707 5994745 -236669608 + (TG)n Simple_repeat Simple_repeat 2 39 0 895 132 0 0 chr1 5994771 5994907 -236669446 + AluJb SINE Alu 1 136 -176 2207 103 3 0 chr1 5995500 5995801 -236668552 - AluSx SINE Alu -8 304 3 203 322 17 0 chr1 5996197 5996256 -236668097 + L2 LINE L2 3244 3303 -10 2087 132 0 0 chr1 5996449 5996753 -236667600 + AluY SINE Alu 1 304 -7 2184 89 3 3 chr1 5996807 5997098 -236667255 - AluSx SINE Alu -21 291 1 688 219 140 79 chr1 5997486 5997875 -236666478 + MLT1C LTR MaLR 1 426 -41 284 125 0 0 chr1 5997974 5998014 -236666339 + Alu SINE Alu 1 40 -262 1786 151 3 3 chr1 5998014 5998298 -236666055 + AluJb SINE Alu 11 294 -18 2121 99 20 3 chr1 5998601 5998895 -236665458 - AluSx SINE Alu -13 299 1 294 218 92 79 chr1 5998896 5999126 -236665227 - MLT1C LTR MaLR -165 340 99 855 123 0 0 chr1 5999422 5999544 -236664809 - AluJ SINE Alu -8 304 183 957 105 0 0 chr1 5999547 5999680 -236664673 - AluJ SINE Alu -179 133 1 1990 132 0 0 chr1 5999710 6000021 -236664332 + AluSx SINE Alu 2 312 0 2826 200 43 32 chr1 6000890 6001474 -236662879 + MLT1E LTR MaLR 1 590 -3 626 286 57 40 chr1 6001567 6001815 -236662538 + MIR SINE MIR 8 259 -3 454 183 0 24 chr1 6002035 6002111 -236662242 + FLAM_A SINE Alu 45 119 -18 2120 130 0 0 chr1 6002111 6002411 -236661942 - AluSx SINE Alu -12 300 1 1393 118 22 18 chr1 6002512 6002741 -236661612 + AluJb SINE Alu 82 311 -1 628 198 25 0 chr1 6003260 6003381 -236660972 + MER2 DNA MER2_type 2 125 -220 763 143 84 0 chr1 6003388 6003507 -236660846 - AluSg/x SINE Alu -39 271 143 2122 99 3 0 chr1 6003509 6003803 -236660550 - AluSq SINE Alu -18 295 1 531 287 51 19 chr1 6003804 6003903 -236660450 + MER2 DNA MER2_type 123 217 -128 774 167 8 0 chr1 6003903 6004035 -236660318 - FLAM_C SINE Alu 0 133 1 531 287 51 19 chr1 6004035 6004151 -236660202 + MER2 DNA MER2_type 217 345 0 2170 92 7 13 chr1 6004370 6004675 -236659678 - AluSx SINE Alu -9 303 1 2069 142 0 0 chr1 6005504 6005813 -236658540 + AluJo SINE Alu 1 309 -3 297 322 68 1 chr1 6006041 6006187 -236658166 - MIR SINE MIR -67 141 18 297 280 118 0 chr1 6006459 6006552 -236657801 + L2 LINE L2 2872 2975 -338 224 209 0 0 chr1 6006587 6006630 -236657723 + L2 LINE L2 3230 3272 0 21 0 0 0 chr1 6009155 6009176 -236655177 + GC_rich Low_complexity Low_complexity 1 21 0 1941 108 29 55 chr1 6010398 6010705 -236653648 - AluSq SINE Alu -14 299 1 276 272 93 25 chr1 6010808 6011001 -236653352 - MIR SINE MIR -31 177 2 257 0 0 29 chr1 6011100 6011134 -236653219 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 2076 104 21 0 chr1 6011911 6012200 -236652153 - AluSx SINE Alu -17 295 1 1344 150 5 0 chr1 6012383 6012596 -236651757 + AluJo SINE Alu 75 288 -24 28 29 0 0 chr1 6012602 6012637 -236651716 + AT_rich Low_complexity Low_complexity 1 35 0 653 171 8 0 chr1 6012638 6012761 -236651592 + L1MB7 LINE L1 6045 6168 -16 421 280 65 60 chr1 6013579 6013788 -236650565 - MIR SINE MIR -16 246 34 1009 133 66 0 chr1 6014040 6014206 -236650147 - AluSg/x SINE Alu -2 308 132 2114 115 0 19 chr1 6014206 6014520 -236649833 - AluSx SINE Alu -4 308 1 421 163 325 0 chr1 6014655 6014778 -236649575 - MER3 DNA MER1_type -6 203 41 2197 113 0 7 chr1 6015269 6015578 -236648775 + AluSx SINE Alu 1 307 -5 2411 246 46 43 chr1 6015855 6016564 -236647789 + L2 LINE L2 1883 2596 -718 1363 171 57 67 chr1 6016564 6016863 -236647490 - AluJb SINE Alu -16 296 1 2411 246 46 43 chr1 6016863 6016958 -236647395 + L2 LINE L2 2596 2689 -625 722 282 177 26 chr1 6016965 6017344 -236647009 + L2 LINE L2 2863 3298 -15 1250 157 14 9 chr1 6017422 6017639 -236646714 + LTR26E LTR ERV1 397 614 -8 2211 95 6 13 chr1 6018381 6018696 -236645657 + AluSq SINE Alu 1 313 0 446 33 0 16 chr1 6020061 6020122 -236644231 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1394 164 30 69 chr1 6020122 6020427 -236643926 - AluJb SINE Alu -19 293 1 817 183 15 0 chr1 6020721 6020858 -236643495 - FLAM_C SINE Alu -3 140 2 820 169 0 0 chr1 6020931 6021061 -236643292 - FLAM_C SINE Alu -1 132 3 1975 139 13 3 chr1 6021152 6021494 -236642859 + AluSx SINE Alu 1 345 0 1714 141 0 4 chr1 6021519 6021781 -236642572 + AluJb SINE Alu 34 294 -18 452 240 40 0 chr1 6023189 6023314 -236641039 + MIR3 SINE MIR 58 187 -21 200 216 0 20 chr1 6023859 6023910 -236640443 + CT-rich Low_complexity Low_complexity 2 51 0 197 65 32 0 chr1 6025117 6025148 -236639205 + (CGGG)n Simple_repeat Simple_repeat 1 32 0 436 72 29 0 chr1 6027951 6028020 -236636333 + (TCC)n Simple_repeat Simple_repeat 1 71 0 210 150 0 0 chr1 6028032 6028072 -236636281 + (CTG)n Simple_repeat Simple_repeat 3 42 0 187 31 62 0 chr1 6029106 6029138 -236635215 + A-rich Low_complexity Low_complexity 2 35 0 252 0 0 0 chr1 6029737 6029765 -236634588 + (TG)n Simple_repeat Simple_repeat 2 29 0 400 368 0 28 chr1 6030130 6030312 -236634041 - MIR3 SINE MIR -2 206 30 223 212 153 0 chr1 6030364 6030449 -236633904 + MIR3 SINE MIR 66 163 -45 1707 197 92 15 chr1 6030600 6031027 -236633326 - MLT1C LTR MaLR 0 467 1 2383 60 0 3 chr1 6031108 6031409 -236632944 - AluY SINE Alu -11 300 1 2320 79 7 0 chr1 6031494 6031798 -236632555 - AluSp SINE Alu -7 306 1 636 182 179 23 chr1 6031829 6032019 -236632334 - MIR SINE MIR -56 206 1 844 145 0 8 chr1 6032269 6032400 -236631953 + FLAM_C SINE Alu 4 133 0 2298 88 3 0 chr1 6032985 6033282 -236631071 - AluSp SINE Alu -7 306 9 184 326 0 0 chr1 6033914 6033963 -236630390 - L2 LINE L2 0 3313 3265 1989 113 38 3 chr1 6034435 6034728 -236629625 - AluSx SINE Alu -9 303 1 2162 100 17 0 chr1 6034774 6035075 -236629278 + AluSp SINE Alu 2 307 -6 279 292 67 46 chr1 6035086 6035281 -236629072 + L2 LINE L2 3114 3312 -1 1788 169 3 0 chr1 6035373 6035674 -236628679 - AluSx SINE Alu -10 302 1 207 313 27 68 chr1 6036173 6036205 -236628148 + L2 LINE L2 3132 3164 -108 1805 157 0 41 chr1 6036205 6036347 -236628006 + AluJo SINE Alu 1 147 -165 2223 89 3 7 chr1 6036347 6036649 -236627704 + AluSp SINE Alu 1 301 -12 1805 157 0 41 chr1 6036649 6036825 -236627528 + AluJo SINE Alu 147 306 -6 207 313 27 68 chr1 6036825 6036939 -236627414 + L2 LINE L2 3164 3272 0 2023 169 19 3 chr1 6036984 6037344 -236627009 - MLT1B LTR MaLR 0 390 25 329 102 20 0 chr1 6037405 6037454 -236626899 - MLT1B LTR MaLR -340 50 1 249 33 0 0 chr1 6037473 6037503 -236626850 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 492 274 62 44 chr1 6037715 6037962 -236626391 - MIR SINE MIR -12 250 1 586 184 65 30 chr1 6038219 6038366 -236625987 + MER53 DNA DNA 1 156 -33 2380 92 0 0 chr1 6038366 6038669 -236625684 + AluSx SINE Alu 1 303 -9 586 184 65 30 chr1 6038669 6038689 -236625664 + MER53 DNA DNA 156 174 -15 1220 284 28 54 chr1 6038941 6039402 -236624951 - MLT1J LTR MaLR -49 462 14 1479 178 52 0 chr1 6039454 6039724 -236624629 - AluJb SINE Alu -22 290 7 208 283 0 0 chr1 6040039 6040092 -236624261 - L2 LINE L2 -31 3241 3189 1888 143 0 10 chr1 6040708 6041002 -236623351 + AluJb SINE Alu 1 291 -21 2060 143 7 0 chr1 6041002 6041310 -236623043 + AluSg SINE Alu 1 310 0 2017 122 24 0 chr1 6041833 6042127 -236622226 + AluSx SINE Alu 1 301 -11 2025 84 3 34 chr1 6042127 6042448 -236621905 + AluSx SINE Alu 1 312 0 2155 117 3 0 chr1 6042723 6043032 -236621321 - AluSx SINE Alu -2 310 1 1912 120 68 0 chr1 6043576 6043868 -236620485 - AluSx SINE Alu 0 312 1 1687 108 88 0 chr1 6043882 6044153 -236620200 - AluJb SINE Alu 0 304 12 2477 62 0 0 chr1 6044576 6044881 -236619472 - AluY SINE Alu -6 305 1 892 151 0 7 chr1 6044882 6045028 -236619325 - AluJb SINE Alu -167 145 1 3888 165 46 23 chr1 6045040 6045504 -236618849 - L1MB4 LINE L1 -84 6096 5644 1994 89 55 28 chr1 6045504 6045795 -236618558 - AluSx SINE Alu -13 299 1 3888 165 46 23 chr1 6045795 6046233 -236618120 - L1MB4 LINE L1 -536 5644 5173 914 142 0 8 chr1 6046408 6046542 -236617811 + FLAM_C SINE Alu 1 133 0 1870 143 13 23 chr1 6047103 6047411 -236616942 + AluJb SINE Alu 1 305 -7 2135 95 0 20 chr1 6047484 6047780 -236616573 + AluSx SINE Alu 23 312 0 1833 125 71 14 chr1 6048330 6048488 -236615865 - AluSx SINE Alu 0 312 165 1893 143 3 10 chr1 6048488 6048782 -236615571 - AluSc SINE Alu -17 292 1 1833 125 71 14 chr1 6048782 6048918 -236615435 - AluSx SINE Alu -147 165 1 193 333 0 0 chr1 6048920 6048983 -236615370 + L2 LINE L2 2454 2516 -798 1783 201 45 21 chr1 6049041 6049465 -236614888 + MER74A LTR ERVL 26 459 -99 2286 94 0 3 chr1 6049465 6049572 -236614781 - AluSc SINE Alu 0 309 203 1037 82 6 22 chr1 6049572 6049755 -236614598 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2286 94 0 3 chr1 6049755 6050304 -236614049 - AluSc SINE Alu -106 203 1 475 176 19 37 chr1 6050306 6050414 -236613939 + MER74A LTR ERVL 443 548 -10 2117 128 0 0 chr1 6050415 6050720 -236613633 - AluSx SINE Alu -7 305 1 841 288 105 30 chr1 6050826 6051399 -236612954 + L2 LINE L2 2677 3294 -19 236 224 0 0 chr1 6052172 6052221 -236612132 - L2 LINE L2 -3 3269 3221 4055 165 15 82 chr1 6052343 6052566 -236611787 + L1MB8 LINE L1 4920 5156 -1022 2119 125 0 0 chr1 6052566 6052862 -236611491 + AluSq SINE Alu 1 296 -17 4055 165 15 82 chr1 6052862 6053094 -236611259 + L1MB8 LINE L1 5156 5402 -776 1630 162 0 45 chr1 6053094 6053408 -236610945 + AluJb SINE Alu 1 300 -12 4055 165 15 82 chr1 6053408 6053569 -236610784 + L1MB8 LINE L1 5402 5572 -606 2361 78 3 7 chr1 6053569 6053877 -236610476 + AluSx SINE Alu 1 307 -5 4055 165 15 82 chr1 6053877 6054020 -236610333 + L1MB8 LINE L1 5572 5723 -455 1914 127 7 23 chr1 6054020 6054319 -236610034 + AluSx SINE Alu 1 294 -18 4055 165 15 82 chr1 6054319 6054534 -236609819 + L1MB8 LINE L1 5723 5771 -407 1956 141 17 0 chr1 6054534 6054833 -236609520 + AluSx SINE Alu 1 304 -8 4055 165 15 82 chr1 6054833 6055216 -236609137 + L1MB8 LINE L1 5771 6178 0 2126 92 14 3 chr1 6055221 6055516 -236608837 + AluSx SINE Alu 1 298 -14 2037 127 0 7 chr1 6055612 6055911 -236608442 + AluSx SINE Alu 3 299 -13 1296 192 112 0 chr1 6055920 6056196 -236608157 + AluJo SINE Alu 6 312 0 524 202 54 8 chr1 6056200 6056329 -236608024 + MLT1E2 LTR MaLR 36 170 -456 826 137 0 0 chr1 6056331 6056455 -236607898 - AluSg/x SINE Alu -18 292 169 1908 106 0 0 chr1 6056455 6056710 -236607643 - AluSq SINE Alu -58 255 1 813 147 74 165 chr1 6056710 6056737 -236607616 + MLT1E2 LTR MaLR 163 191 -314 2494 65 0 0 chr1 6056737 6057047 -236607306 + AluY SINE Alu 1 310 -1 813 147 74 165 chr1 6057047 6057427 -236606926 + MLT1E2 LTR MaLR 191 505 0 1684 151 3 43 chr1 6057487 6057786 -236606567 + AluJo SINE Alu 13 299 -13 234 170 22 0 chr1 6057974 6058023 -236606330 + MIR SINE MIR 95 140 -68 2391 77 3 0 chr1 6058677 6058988 -236605365 - AluSp SINE Alu -1 312 1 1905 121 13 26 chr1 6058988 6059292 -236605061 - AluSx SINE Alu -11 301 1 2000 113 0 0 chr1 6059890 6060202 -236604151 + AluJb SINE Alu 29 340 0 316 265 191 25 chr1 6060366 6060528 -236603825 - MIR SINE MIR -9 253 65 30 58 0 14 chr1 6060862 6060906 -236603447 + GC_rich Low_complexity Low_complexity 1 45 -23 208 24 24 71 chr1 6060906 6060948 -236603405 + (CCCCCG)n Simple_repeat Simple_repeat 5 44 0 30 58 0 14 chr1 6060948 6060972 -236603381 + GC_rich Low_complexity Low_complexity 45 68 0 44 70 0 0 chr1 6061269 6061355 -236602998 + GC_rich Low_complexity Low_complexity 1 86 0 26 64 0 0 chr1 6061767 6061814 -236602539 + AT_rich Low_complexity Low_complexity 1 47 0 1689 164 0 4 chr1 6061828 6062108 -236602245 - AluJb SINE Alu -31 281 3 1834 102 8 8 chr1 6062223 6062488 -236601865 - AluSx SINE Alu -47 265 1 1908 110 16 39 chr1 6062578 6062887 -236601466 + AluSx SINE Alu 1 302 -10 463 244 306 0 chr1 6062889 6063049 -236601304 - MIR SINE MIR -6 256 48 689 221 32 100 chr1 6063359 6063431 -236600922 + MIR SINE MIR 31 106 -156 2054 117 40 0 chr1 6063431 6063731 -236600622 - AluSx SINE Alu 0 312 1 689 221 32 100 chr1 6063731 6063907 -236600446 + MIR SINE MIR 106 262 0 1539 221 192 32 chr1 6064039 6064978 -236599375 - L2 LINE L2 0 3313 2234 620 194 12 43 chr1 6064987 6065233 -236599120 + MER63 DNA MER1_type 1 915 -147 1920 138 0 0 chr1 6065233 6065524 -236598829 - AluSx SINE Alu 0 312 22 476 331 6 29 chr1 6066665 6066840 -236597513 - MIR3 SINE MIR -31 177 7 1797 122 29 11 chr1 6067587 6067898 -236596455 - AluJb SINE Alu 0 316 1 326 319 135 12 chr1 6068022 6068185 -236596168 + MIR SINE MIR 80 262 0 184 311 40 0 chr1 6068222 6068296 -236596057 + MER5A DNA MER1_type 35 111 -78 207 206 0 73 chr1 6068459 6068527 -236595826 - MER5B DNA MER1_type -115 63 1 259 271 90 71 chr1 6070175 6070330 -236594023 + MIR SINE MIR 57 214 -48 850 258 68 0 chr1 6070385 6070606 -236593747 - MIR SINE MIR -22 240 5 2112 95 7 3 chr1 6072148 6072442 -236591911 - AluSx SINE Alu -17 295 1 228 340 10 10 chr1 6074450 6074553 -236589800 + CT-rich Low_complexity Low_complexity 2 104 0 756 163 23 0 chr1 6074717 6074846 -236589507 + FLAM_A SINE Alu 1 132 -1 334 219 0 79 chr1 6076557 6076735 -236587618 + (CACCC)n Simple_repeat Simple_repeat 5 168 0 339 25 0 0 chr1 6077632 6077672 -236586681 + (TTG)n Simple_repeat Simple_repeat 2 41 0 224 292 0 14 chr1 6078189 6078261 -236586092 + MIR SINE MIR 130 200 -62 630 180 50 29 chr1 6078593 6078732 -236585621 - FLAM_A SINE Alu 0 142 1 604 167 48 8 chr1 6078769 6078895 -236585458 - L1MB7 LINE L1 -19 6165 6035 511 268 73 0 chr1 6079667 6079831 -236584522 + MER104 DNA MER2_type 1 176 -4 531 304 86 45 chr1 6080081 6080272 -236584081 - MIR SINE MIR -6 256 50 1948 122 11 0 chr1 6080272 6080598 -236583755 + AluSx SINE Alu 1 329 0 531 304 86 45 chr1 6080598 6080647 -236583706 - MIR SINE MIR -212 50 4 2528 207 48 11 chr1 6080884 6081453 -236582900 - L1MB8 LINE L1 0 6178 5589 1930 151 0 0 chr1 6081463 6081780 -236582573 - AluJo SINE Alu 0 317 1 240 299 0 58 chr1 6081852 6081939 -236582414 + Charlie8 DNA MER1_type 127 208 -2209 614 288 19 28 chr1 6082167 6082382 -236581971 + MIR SINE MIR 12 224 -38 264 280 87 29 chr1 6083157 6083328 -236581025 - L1MEd LINE L1 -5058 1061 875 1592 140 55 49 chr1 6083328 6083635 -236580718 - AluJb SINE Alu -3 309 1 264 280 87 29 chr1 6083635 6083670 -236580683 - L1MEd LINE L1 -5244 875 843 181 200 25 0 chr1 6083924 6083964 -236580389 - L2 LINE L2 -252 3020 2980 292 213 20 80 chr1 6084333 6084483 -236579870 + (TTG)n Simple_repeat Simple_repeat 2 142 0 232 256 45 51 chr1 6084556 6084732 -236579621 + (TTG)n Simple_repeat Simple_repeat 2 176 0 275 211 50 67 chr1 6084807 6084987 -236579366 + (TTG)n Simple_repeat Simple_repeat 2 178 0 215 160 60 20 chr1 6085004 6085104 -236579249 + (TTG)n Simple_repeat Simple_repeat 2 105 0 2331 69 13 3 chr1 6085182 6085486 -236578867 - AluY SINE Alu -4 307 1 225 211 38 53 chr1 6085631 6085764 -236578589 + (TTATG)n Simple_repeat Simple_repeat 2 132 0 331 163 42 105 chr1 6085894 6086084 -236578269 + (TTG)n Simple_repeat Simple_repeat 2 179 0 387 185 52 58 chr1 6086116 6086289 -236578064 + (TTG)n Simple_repeat Simple_repeat 2 173 0 304 225 33 71 chr1 6086318 6086500 -236577853 + (TTG)n Simple_repeat Simple_repeat 2 176 0 220 193 61 83 chr1 6086531 6086712 -236577641 + (TTGTG)n Simple_repeat Simple_repeat 2 178 0 * 396 181 44 72 chr1 6086579 6086946 -236577407 + (TTG)n Simple_repeat Simple_repeat 1 356 0 361 327 168 13 chr1 6087011 6087631 -236576722 + L2 LINE L2 2288 3017 -296 284 200 122 11 chr1 6087759 6087849 -236576504 - MIR SINE MIR -96 166 67 327 256 144 24 chr1 6089008 6089133 -236575220 - MIR SINE MIR -16 246 107 218 286 60 65 chr1 6091398 6091566 -236572787 - L2 LINE L2 -182 3090 2924 898 115 0 0 chr1 6091870 6091992 -236572361 - FLAM_C SINE Alu -21 122 1 2025 108 17 0 chr1 6093023 6093318 -236571035 - AluSx SINE Alu -12 300 1 296 319 113 11 chr1 6093977 6094162 -236570191 + MER112 DNA MER1_type 3 206 -54 1809 163 14 0 chr1 6094170 6094465 -236569888 + AluJo SINE Alu 12 310 -2 2242 70 28 0 chr1 6097146 6097432 -236566921 - AluSx SINE Alu -18 294 1 380 298 8 0 chr1 6098483 6098607 -236565746 + MLT1K LTR MaLR 148 272 -316 180 383 148 9 chr1 6099285 6099400 -236564953 + L2 LINE L2 3142 3272 0 25 31 0 0 chr1 6100050 6100082 -236564271 + AT_rich Low_complexity Low_complexity 1 32 0 248 252 75 100 chr1 6100242 6100452 -236563901 - HAL1b LINE L1 -164 1184 970 2123 106 0 3 chr1 6100452 6100745 -236563608 + AluSx SINE Alu 1 292 -20 248 252 75 100 chr1 6100745 6100901 -236563452 - HAL1b LINE L1 -378 970 826 2032 122 10 19 chr1 6100901 6101213 -236563140 - AluSx SINE Alu -3 309 1 248 252 75 100 chr1 6101213 6101246 -236563107 - HAL1b LINE L1 -522 826 794 249 264 81 0 chr1 6101944 6102031 -236562322 - MIR SINE MIR -61 147 52 2266 94 0 3 chr1 6102582 6102880 -236561473 + AluSx SINE Alu 1 297 -15 34 55 0 0 chr1 6102916 6102971 -236561382 + AT_rich Low_complexity Low_complexity 1 55 0 2136 123 32 59 chr1 6103279 6103328 -236561025 - THE1B LTR MaLR 0 364 315 1943 107 3 31 chr1 6103328 6103515 -236560838 - AluSx SINE Alu 0 316 139 2264 73 3 10 chr1 6103515 6103815 -236560538 - AluY SINE Alu -13 298 1 1943 107 3 31 chr1 6103815 6103951 -236560402 - AluSx SINE Alu -177 139 1 2136 123 32 59 chr1 6103951 6104274 -236560079 - THE1B LTR MaLR -49 315 1 452 243 6 105 chr1 6104358 6104539 -236559814 - MLT1K LTR MaLR 0 588 426 907 199 21 16 chr1 6104563 6104749 -236559604 + MER53 DNA DNA 3 189 0 375 119 0 0 chr1 6105970 6106037 -236558316 + (GA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr1 6106456 6106476 -236557877 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 262 173 12 12 chr1 6106566 6106647 -236557706 + C-rich Low_complexity Low_complexity 3 83 0 323 250 113 8 chr1 6107073 6107197 -236557156 + MIR SINE MIR 16 152 -110 349 335 67 11 chr1 6107603 6107782 -236556571 - L2 LINE L2 -13 3259 3071 295 276 29 9 chr1 6107893 6107998 -236556355 + MIR3 SINE MIR 81 187 -21 515 186 0 17 chr1 6108646 6108764 -236555589 + CT-rich Low_complexity Low_complexity 1 116 0 1296 171 121 14 chr1 6109209 6109489 -236554864 + AluJb SINE Alu 1 310 -2 1753 147 65 73 chr1 6110053 6110421 -236553932 + MLT1A1 LTR MaLR 1 365 0 450 231 42 88 chr1 6110421 6110637 -236553716 - HAL1 LINE L1 -22 2485 2280 896 186 54 15 chr1 6110637 6110841 -236553512 + MIR SINE MIR 51 262 0 586 257 140 23 chr1 6110880 6111187 -236553166 - HAL1 LINE L1 -291 2216 1874 1617 83 41 0 chr1 6111187 6111405 -236552948 - AluSg SINE Alu -83 227 1 480 242 109 0 chr1 6112375 6112503 -236551850 + MLT1H LTR MaLR 408 549 0 314 311 196 5 chr1 6112675 6112884 -236551469 - L2 LINE L2 -477 2837 2589 1324 181 116 18 chr1 6112895 6113232 -236551121 - MLT1C LTR MaLR -92 375 6 646 295 72 0 chr1 6113626 6113819 -236550534 + MIR SINE MIR 50 256 -6 2014 133 0 3 chr1 6113997 6114291 -236550062 + AluSx SINE Alu 1 293 -19 228 281 0 0 chr1 6114415 6114472 -236549881 + L2 LINE L2 3214 3270 -2 250 319 119 38 chr1 6114781 6114966 -236549387 + L2 LINE L2 3114 3313 0 29 28 0 0 chr1 6115033 6115069 -236549284 + AT_rich Low_complexity Low_complexity 1 36 0 783 178 0 0 chr1 6115509 6115627 -236548726 + AluJb SINE Alu 1 118 -194 430 210 0 0 chr1 6115934 6116015 -236548338 - MIR SINE MIR -122 140 60 1552 120 0 4 chr1 6117148 6117373 -236546980 - AluSc SINE Alu -12 297 74 2362 74 3 3 chr1 6117373 6117683 -236546670 - AluY SINE Alu 0 311 1 971 187 0 65 chr1 6117690 6117920 -236546433 - AluJo SINE Alu -97 215 1 34 0 0 0 chr1 6118923 6118957 -236545396 + GC_rich Low_complexity Low_complexity 1 34 0 240 35 0 0 chr1 6118995 6119024 -236545329 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr1 6119146 6119176 -236545177 + GC_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr1 6119196 6119221 -236545132 + GC_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr1 6119244 6119286 -236545067 + GC_rich Low_complexity Low_complexity 1 42 0 226 281 16 16 chr1 6119318 6119446 -236544907 + G-rich Low_complexity Low_complexity 4 131 0 21 107 0 0 chr1 6119498 6119582 -236544771 + GC_rich Low_complexity Low_complexity 1 84 0 21 57 0 0 chr1 6119721 6119756 -236544597 + GC_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 6119802 6119838 -236544515 + GC_rich Low_complexity Low_complexity 1 36 0 273 259 0 0 chr1 6120053 6120200 -236544153 + (TG)n Simple_repeat Simple_repeat 2 148 0 438 176 0 0 chr1 6120227 6120346 -236544007 + (TG)n Simple_repeat Simple_repeat 2 120 0 369 230 0 0 chr1 6120403 6120581 -236543772 + (TG)n Simple_repeat Simple_repeat 1 178 0 369 102 0 0 chr1 6121390 6121449 -236542904 + (TG)n Simple_repeat Simple_repeat 1 59 0 331 329 153 0 chr1 6122397 6122567 -236541786 - MIR SINE MIR -39 223 28 205 315 0 0 chr1 6122718 6122772 -236541581 + (CA)n Simple_repeat Simple_repeat 1 54 0 243 188 0 0 chr1 6122790 6122838 -236541515 + (CA)n Simple_repeat Simple_repeat 2 49 0 11922 158 50 38 chr1 6123666 6124568 -236539785 + ERVL-B3 LTR ERVL 959 1849 -3915 744 94 0 0 chr1 6124568 6124674 -236539679 + (TGAA)n Simple_repeat Simple_repeat 4 109 0 11922 158 50 38 chr1 6124674 6125555 -236538798 + ERVL-B3 LTR ERVL 1849 2718 -3046 1695 153 0 59 chr1 6125555 6125667 -236538686 + AluJo SINE Alu 1 118 -194 189 0 0 0 chr1 6125667 6125688 -236538665 + (TC)n Simple_repeat Simple_repeat 2 22 0 2079 104 3 3 chr1 6125688 6125975 -236538378 - AluSq SINE Alu -24 289 3 1695 153 0 59 chr1 6125975 6126009 -236538344 + AluJo SINE Alu 116 301 -11 1133 151 0 6 chr1 6126009 6126181 -236538172 + AluJb SINE Alu 131 301 -11 11922 158 50 38 chr1 6126181 6127406 -236536947 + ERVL-B3 LTR ERVL 2718 4016 -1748 1812 121 39 39 chr1 6127406 6127711 -236536642 + AluJo SINE Alu 1 305 -7 11922 158 50 38 chr1 6127711 6128290 -236536063 + ERVL-B3 LTR ERVL 4016 4587 -1177 822 124 11 68 chr1 6128315 6128492 -236535861 + Ricksha DNA DNA 246 412 -1634 1110 182 120 8 chr1 6128591 6128849 -236535504 + MLT2B3 LTR ERVL 75 361 -193 6180 158 20 15 chr1 6128849 6130016 -236534337 + ERVL-B3 LTR ERVL 4593 5764 0 827 161 97 51 chr1 6130016 6130076 -236534277 + Ricksha DNA DNA 343 412 -842 2135 166 55 36 chr1 6130176 6130647 -236533706 + MLT2B3 LTR ERVL 75 554 0 1112 150 75 0 chr1 6130967 6131154 -236533199 - AluJo SINE Alu -107 205 5 214 281 132 83 chr1 6131595 6131716 -236532637 + L2 LINE L2 3146 3272 0 290 287 215 15 chr1 6131926 6132121 -236532232 - L2 LINE L2 0 3272 3039 467 262 152 42 chr1 6132682 6132873 -236531480 - MIR SINE MIR -40 222 11 2221 128 0 0 chr1 6133114 6133426 -236530927 - AluSx SINE Alu 0 312 1 1625 195 24 0 chr1 6133429 6133716 -236530637 - L1MB5 LINE L1 0 6174 5881 331 325 97 0 chr1 6134811 6134925 -236529428 - MIR SINE MIR -13 249 125 303 49 0 0 chr1 6135460 6135501 -236528852 + (GA)n Simple_repeat Simple_repeat 1 41 0 300 27 0 0 chr1 6135500 6135537 -236528816 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 1261 155 0 5 chr1 6135537 6135731 -236528622 - AluJo SINE Alu -33 279 87 2057 128 3 0 chr1 6135759 6136047 -236528306 + AluSx SINE Alu 1 289 -23 2030 135 0 10 chr1 6136609 6136913 -236527440 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr1 6137359 6137380 -236526973 + AT_rich Low_complexity Low_complexity 1 21 0 255 198 55 44 chr1 6137584 6137675 -236526678 - L1MC5 LINE L1 -35 7926 7835 1331 122 19 158 chr1 6138214 6138525 -236525828 - AluJo SINE Alu -44 268 1 279 349 23 16 chr1 6138605 6138734 -236525619 - L1MB8 LINE L1 0 6178 6049 21 36 0 0 chr1 6138937 6138965 -236525388 + AT_rich Low_complexity Low_complexity 1 28 0 646 251 58 72 chr1 6139172 6139315 -236525038 - MIR SINE MIR -11 251 108 2047 93 0 11 chr1 6139315 6139595 -236524758 + AluSq SINE Alu 3 279 -34 646 251 58 72 chr1 6139595 6139608 -236524745 - MIR SINE MIR -154 108 96 240 35 0 0 chr1 6139608 6139637 -236524716 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 646 251 58 72 chr1 6139637 6139702 -236524651 - MIR SINE MIR -166 96 32 205 269 0 0 chr1 6139968 6140020 -236524333 + L2 LINE L2 3221 3272 0 2268 113 0 0 chr1 6140092 6140402 -236523951 + AluSx SINE Alu 1 310 -2 266 376 42 30 chr1 6141548 6141713 -236522640 - MIR SINE MIR 0 262 96 234 0 0 0 chr1 6142065 6142091 -236522262 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 239 234 0 0 chr1 6142577 6142624 -236521729 + (TG)n Simple_repeat Simple_repeat 2 48 0 273 276 95 0 chr1 6143007 6143112 -236521241 + MIR SINE MIR 45 159 -103 251 273 22 65 chr1 6143384 6143523 -236520830 - L2 LINE L2 -205 3067 2935 1420 170 50 47 chr1 6143681 6143981 -236520372 - AluJb SINE Alu -11 301 1 21 0 0 0 chr1 6144034 6144055 -236520298 + AT_rich Low_complexity Low_complexity 1 21 0 359 252 165 8 chr1 6144712 6144839 -236519514 + MIR SINE MIR 41 187 -75 255 328 115 16 chr1 6144940 6145062 -236519291 - L2 LINE L2 -43 3229 3096 1894 108 46 29 chr1 6145106 6145412 -236518941 + AluSx SINE Alu 1 311 -1 218 57 0 75 chr1 6145587 6145640 -236518713 + (TCC)n Simple_repeat Simple_repeat 1 49 0 367 241 24 0 chr1 6146385 6146468 -236517885 - L2 LINE L2 -5 3308 3224 188 379 0 0 chr1 6147685 6147751 -236516602 - L2 LINE L2 -9 3263 3198 341 267 114 8 chr1 6147809 6147940 -236516413 - MER104 DNA Tc2 -3 177 33 537 284 129 10 chr1 6148388 6148589 -236515764 - MIR SINE MIR -14 248 24 866 287 122 26 chr1 6151766 6152191 -236512162 - L2 LINE L2 -3 3310 2845 302 248 23 53 chr1 6153433 6153566 -236510787 + Charlie7 DNA MER1_type 2437 2565 -47 1061 211 72 0 chr1 6153897 6154106 -236510247 - MER58A DNA MER1_type 0 224 1 428 206 28 9 chr1 6154533 6154640 -236509713 + MER103 DNA DNA 17 125 -41 273 356 22 37 chr1 6154709 6154844 -236509509 - MIR3 SINE MIR -41 167 35 626 195 86 104 chr1 6154977 6155198 -236509155 - MER20 DNA MER1_type -2 217 1 247 218 0 36 chr1 6155478 6155533 -236508820 + (TGGG)n Simple_repeat Simple_repeat 3 55 0 1446 122 22 0 chr1 6155699 6155921 -236508432 + AluSg/x SINE Alu 86 312 0 2031 85 32 21 chr1 6156384 6156695 -236507658 + AluSq SINE Alu 1 314 0 515 170 28 19 chr1 6156908 6157014 -236507339 - L1MB3 LINE L1 0 6183 6077 586 157 25 33 chr1 6157020 6157141 -236507212 - L1MB3 LINE L1 -588 5595 5476 464 339 107 61 chr1 6157307 6157517 -236506836 - L1ME3 LINE L1 -294 5868 5669 2240 106 3 3 chr1 6157517 6157829 -236506524 - AluSq SINE Alu -1 312 1 464 339 107 61 chr1 6157829 6158143 -236506210 - L1ME3 LINE L1 -493 5669 5320 876 125 0 22 chr1 6158266 6158402 -236505951 + FLAM_C SINE Alu 1 133 0 2372 92 0 0 chr1 6159524 6159829 -236504524 - AluSx SINE Alu -7 305 1 2250 106 0 0 chr1 6160282 6160584 -236503769 - AluSx SINE Alu -10 302 1 1099 82 0 0 chr1 6160584 6160719 -236503634 - AluSq/x SINE Alu -178 135 1 2848 158 16 60 chr1 6160719 6161339 -236503014 - L1MB3 LINE L1 -33 6150 5558 2214 117 0 0 chr1 6161418 6161716 -236502637 + AluSx SINE Alu 1 298 -14 1760 149 30 27 chr1 6161725 6162026 -236502327 + AluJb SINE Alu 1 302 -10 2293 95 7 0 chr1 6162418 6162724 -236501629 - AluSp SINE Alu -5 308 1 256 276 0 40 chr1 6166224 6166300 -236498053 - MER5A DNA MER1_type -75 114 42 247 250 25 25 chr1 6167573 6167653 -236496700 + L2 LINE L2 3155 3234 -79 2379 74 3 0 chr1 6167901 6168200 -236496153 - AluSp SINE Alu -13 300 1 2195 159 24 58 chr1 6169273 6169725 -236494628 - L1MB5 LINE L1 0 6174 5738 2457 56 0 10 chr1 6169981 6170286 -236494067 - AluY SINE Alu -9 302 1 729 207 103 23 chr1 6170386 6170560 -236493793 - MER5A DNA MER1_type 0 189 2 813 165 0 8 chr1 6173234 6173367 -236490986 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 6173591 6173891 -236490462 - L1MC4a LINE L1 -6 6115 5784 2353 75 0 0 chr1 6174142 6174436 -236489917 - AluSx SINE Alu -11 301 8 381 131 0 0 chr1 6175136 6175197 -236489156 + (TG)n Simple_repeat Simple_repeat 2 62 0 444 201 17 17 chr1 6176136 6176315 -236488038 + (CA)n Simple_repeat Simple_repeat 2 180 0 247 274 16 0 chr1 6176764 6176826 -236487527 + (TG)n Simple_repeat Simple_repeat 1 63 0 622 164 0 0 chr1 6177279 6177383 -236486970 + MER58A DNA MER1_type 3 106 -1 342 209 0 0 chr1 6177383 6177441 -236486912 + MER58A DNA MER1_type 167 224 0 597 220 162 0 chr1 6178597 6178770 -236485583 + MER58A DNA MER1_type 12 212 -12 245 217 0 43 chr1 6178833 6178902 -236485451 + C-rich Low_complexity Low_complexity 1 66 0 217 293 0 27 chr1 6179000 6179075 -236485278 + C-rich Low_complexity Low_complexity 2 74 0 2147 97 7 0 chr1 6179836 6180134 -236484219 + AluSq SINE Alu 1 300 -13 1934 75 47 0 chr1 6180759 6181013 -236483340 + AluSx SINE Alu 31 296 -16 508 185 32 0 chr1 6182987 6183144 -236481209 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 227 156 67 0 chr1 6183161 6183206 -236481147 + (TGGG)n Simple_repeat Simple_repeat 3 50 0 1167 178 0 3 chr1 6183214 6183572 -236480781 + (TGGA)n Simple_repeat Simple_repeat 3 358 0 2331 97 0 0 chr1 6185620 6185920 -236478433 + AluSg SINE Alu 1 300 -10 883 296 259 10 chr1 6185922 6186618 -236477735 - L2 LINE L2 -619 2695 1827 1197 257 97 12 chr1 6186626 6187050 -236477303 - MLT1C LTR MaLR -1 466 7 1011 96 0 15 chr1 6187366 6187501 -236476852 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr1 6188379 6188409 -236475944 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 194 241 35 17 chr1 6189712 6189770 -236474583 + MIR SINE MIR 88 146 -62 2095 125 3 3 chr1 6189902 6190198 -236474155 - AluSx SINE Alu -16 296 1 278 365 19 0 chr1 6190576 6190683 -236473670 - MIR3 SINE MIR -26 182 74 2021 110 0 46 chr1 6190988 6191355 -236472998 - AluSx SINE Alu 0 312 1 1518 156 130 7 chr1 6191355 6191615 -236472738 - AluJo SINE Alu -6 296 1 716 189 86 0 chr1 6191682 6191857 -236472496 - L1MB8 LINE L1 0 6178 5989 405 300 73 13 chr1 6192661 6192773 -236471580 + MIR SINE MIR 2 127 -135 2218 104 7 0 chr1 6192773 6193072 -236471281 - AluSx SINE Alu -11 301 1 405 300 73 13 chr1 6193072 6193109 -236471244 + MIR SINE MIR 127 160 -102 582 217 12 103 chr1 6193222 6193430 -236470923 + MIR SINE MIR 10 193 -62 192 77 0 0 chr1 6195353 6195379 -236468974 + (TA)n Simple_repeat Simple_repeat 2 27 0 453 295 36 24 chr1 6196623 6196789 -236467564 + MER5A DNA MER1_type 21 188 -1 2219 69 0 14 chr1 6197122 6197412 -236466941 + AluSc SINE Alu 4 289 -20 1632 174 27 7 chr1 6199791 6200084 -236464269 - L1MB5 LINE L1 -2 6172 5874 409 255 51 51 chr1 6200126 6200283 -236464070 + MIR SINE MIR 105 261 -1 1020 238 114 76 chr1 6200530 6200691 -236463662 - MLT1D LTR MaLR 0 505 352 1919 137 0 64 chr1 6200691 6201020 -236463333 + AluSx SINE Alu 1 308 -4 1020 238 114 76 chr1 6201020 6201318 -236463035 - MLT1D LTR MaLR -153 352 28 2630 102 24 0 chr1 6201318 6201728 -236462625 + MER83 LTR ERV1 1 420 -28 205 346 0 26 chr1 6203925 6204003 -236460350 + MIR SINE MIR 117 192 -70 2096 120 3 0 chr1 6204057 6204357 -236459996 - AluSq SINE Alu -12 301 1 300 137 0 0 chr1 6204885 6204936 -236459417 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1613 164 72 10 chr1 6204936 6205228 -236459125 - AluSg SINE Alu 0 310 1 34 0 0 0 chr1 6205233 6205267 -236459086 + AT_rich Low_complexity Low_complexity 1 34 0 1851 138 3 3 chr1 6205315 6205765 -236458588 - AluJb SINE Alu 0 450 1 211 147 0 0 chr1 6206049 6206083 -236458270 - MIR SINE MIR -28 234 201 2034 119 3 28 chr1 6206322 6206642 -236457711 - AluSx SINE Alu 0 312 1 1646 140 37 34 chr1 6206643 6206965 -236457388 - THE1B LTR MaLR -41 323 1 407 243 6 105 chr1 6207049 6207230 -236457123 - MLT1K LTR MaLR 0 588 426 905 199 21 16 chr1 6207254 6207440 -236456913 + MER53 DNA DNA 3 189 0 300 127 0 0 chr1 6208661 6208716 -236455637 + (GA)n Simple_repeat Simple_repeat 1 55 0 192 286 79 0 chr1 6209512 6209609 -236454744 + MIR SINE MIR 64 165 -86 453 267 215 0 chr1 6209650 6209822 -236454531 - MIR SINE MIR -50 212 4 236 210 12 111 chr1 6210017 6210080 -236454273 + L2 LINE L2 3239 3294 -19 2041 131 0 7 chr1 6210080 6210377 -236453976 + AluSx SINE Alu 1 295 -17 236 210 12 111 chr1 6210377 6210394 -236453959 + L2 LINE L2 3294 3311 -2 2202 97 0 3 chr1 6210489 6210779 -236453574 + AluSq SINE Alu 1 289 -24 262 343 73 7 chr1 6211655 6211792 -236452561 - MIR SINE MIR -15 247 102 258 160 0 0 chr1 6212209 6212259 -236452094 + AluJb SINE Alu 87 136 -166 1917 136 10 3 chr1 6212259 6212553 -236451800 + AluJb SINE Alu 1 296 -16 194 241 35 17 chr1 6212685 6212743 -236451610 - MIR SINE MIR -62 146 88 207 100 0 0 chr1 6214046 6214076 -236450277 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1012 96 0 15 chr1 6214954 6215123 -236449230 + FLAM_C SINE Alu 1 167 0 1181 259 97 12 chr1 6215424 6215848 -236448505 + MLT1C LTR MaLR 7 466 -1 508 283 337 4 chr1 6215856 6216322 -236448031 + L2 LINE L2 1827 2447 -867 813 165 0 8 chr1 6217268 6217401 -236446952 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 6217625 6217925 -236446428 - L1MC4a LINE L1 -6 6115 5784 2109 63 0 0 chr1 6218216 6218471 -236445882 - AluY SINE Alu -56 255 1 742 112 0 8 chr1 6218496 6218621 -236445732 - MER4A LTR ERV1 -540 124 1 385 156 0 0 chr1 6218621 6218684 -236445669 - MER4E LTR ERV1 -716 63 1 271 267 58 0 chr1 6218840 6218926 -236445427 + MIR SINE MIR 61 151 -57 509 277 45 28 chr1 6219322 6219499 -236444854 + MIR SINE MIR 13 192 -70 2195 111 0 16 chr1 6219649 6219964 -236444389 - AluSx SINE Alu -2 310 1 1955 151 17 0 chr1 6220710 6221009 -236443344 + AluSx SINE Alu 1 304 -8 238 214 0 119 chr1 6221620 6221704 -236442649 - MER91 DNA MER1_type 0 140 67 2092 138 0 3 chr1 6222199 6222510 -236441843 + AluSx SINE Alu 1 310 -2 188 180 0 80 chr1 6223577 6223627 -236440726 - L2 LINE L2 -3 3310 3265 425 130 29 0 chr1 6223679 6223748 -236440605 + AluJ/FLAM SINE Alu 6 76 -236 1971 133 3 3 chr1 6424122 6424415 -236239938 + AluSx SINE Alu 1 293 -19 2244 120 8 6 chr1 6425879 6426237 -236238116 + THE1B LTR MaLR 1 359 -5 1717 181 7 0 chr1 6426325 6426617 -236237736 + AluJb SINE Alu 1 294 -18 1467 166 61 32 chr1 6427570 6427914 -236236439 + MLT1A1 LTR MaLR 1 354 -11 950 263 106 64 chr1 6427929 6428317 -236236036 + MLT1K LTR MaLR 4 415 -61 1935 144 0 10 chr1 6428317 6428615 -236235738 - AluJo SINE Alu -5 307 13 950 263 106 64 chr1 6428615 6428678 -236235675 + MLT1K LTR MaLR 415 474 -2 463 199 130 15 chr1 6428967 6429098 -236235255 + MER112 DNA MER1_type 2 147 -113 202 339 51 34 chr1 6429110 6429228 -236235125 - MIR3 SINE MIR -40 168 49 916 175 12 18 chr1 6430431 6430593 -236233760 - AluJo/FRAM SINE Alu -14 298 136 2003 156 0 0 chr1 6430593 6430894 -236233459 - AluJb SINE Alu -11 301 1 1885 124 4 4 chr1 6431282 6431555 -236232798 + AluJb SINE Alu 17 289 -23 2278 93 3 0 chr1 6431759 6432059 -236232294 + AluSg SINE Alu 1 301 -9 44 46 0 0 chr1 6433369 6433434 -236230919 + GC_rich Low_complexity Low_complexity 1 65 0 200 214 18 0 chr1 6434783 6434839 -236229514 + (TG)n Simple_repeat Simple_repeat 2 58 0 1647 200 0 3 chr1 6436933 6437233 -236227120 + AluJb SINE Alu 1 299 -13 2361 82 7 3 chr1 6437387 6437693 -236226660 + AluSq SINE Alu 1 307 -6 1982 123 0 0 chr1 6438374 6438690 -236225663 - AluSq SINE Alu 0 316 1 212 200 0 62 chr1 6438908 6438973 -236225380 + MIR3 SINE MIR 110 170 -38 244 329 98 18 chr1 6439599 6439763 -236224590 + MIR3 SINE MIR 26 202 -6 422 18 18 0 chr1 6439890 6439945 -236224408 + (CA)n Simple_repeat Simple_repeat 2 57 0 274 296 74 9 chr1 6440586 6440694 -236223659 - MIR SINE MIR -78 130 16 291 225 0 2 chr1 6442615 6442679 -236221674 + MIR SINE MIR 85 140 -68 297 159 76 53 chr1 6442934 6443066 -236221287 - LTR33 LTR ERVL -365 156 22 355 307 60 13 chr1 6443311 6443461 -236220892 + L2 LINE L2 3116 3272 0 2047 129 7 0 chr1 6443915 6444218 -236220135 - AluSx SINE Alu -3 309 5 270 319 69 8 chr1 6444735 6444908 -236219445 + MIR SINE MIR 30 222 -40 234 357 13 58 chr1 6445305 6445459 -236218894 - L2 LINE L2 0 3313 3167 2015 112 18 0 chr1 6445998 6446314 -236218039 + AluSx SINE Alu 1 312 0 695 318 57 48 chr1 6446341 6447004 -236217349 - L2 LINE L2 -4 3309 2624 334 271 199 0 chr1 6447174 6447325 -236217028 - L2 LINE L2 -685 2629 2449 240 277 213 0 chr1 6448456 6448550 -236215803 - L2 LINE L2 -2 3311 3198 22 0 0 0 chr1 6452080 6452102 -236212251 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 6452424 6452446 -236211907 + (CAG)n Simple_repeat Simple_repeat 1 22 0 292 240 170 10 chr1 6452724 6452824 -236211529 + L2 LINE L2 3154 3269 -3 195 270 60 20 chr1 6452882 6452982 -236211371 - L2 LINE L2 -221 3051 2948 2343 64 0 35 chr1 6454452 6454765 -236209588 + AluY SINE Alu 1 302 -9 845 240 77 56 chr1 6455929 6456321 -236208032 - MLT1C LTR MaLR -9 458 59 1450 347 93 20 chr1 6457665 6458912 -236205441 - L2 LINE L2 -1 3312 1965 206 321 95 0 chr1 6458910 6459019 -236205334 - L2 LINE L2 -322 2991 2873 * 2181 109 20 0 chr1 6459574 6459878 -236204475 - AluSx SINE Alu -2 310 1 2120 116 0 16 chr1 6460715 6461018 -236203335 + AluSq SINE Alu 1 298 -15 2098 110 7 17 chr1 6461027 6461328 -236203025 + AluJb SINE Alu 1 298 -14 264 308 165 0 chr1 6461400 6461533 -236202820 - MIR3 SINE MIR -51 157 3 2217 90 0 17 chr1 6461615 6461915 -236202438 + AluSq SINE Alu 5 299 -14 214 275 50 12 chr1 6462502 6462582 -236201771 - MIR SINE MIR -174 88 6 560 336 152 15 chr1 6462666 6463266 -236201087 - L2 LINE L2 -2 3270 2585 189 74 0 0 chr1 6463475 6463502 -236200851 + (GA)n Simple_repeat Simple_repeat 2 28 0 231 291 107 0 chr1 6463585 6463688 -236200665 + L2 LINE L2 3158 3271 -1 354 98 0 0 chr1 6463688 6463739 -236200614 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 216 149 0 0 chr1 6464234 6464281 -236200072 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 2180 131 50 34 chr1 6464802 6465160 -236199193 - THE1B LTR MaLR 0 364 1 1390 224 82 10 chr1 6465230 6465622 -236198731 - MER77 LTR ERV1 -7 598 179 308 188 0 31 chr1 6465802 6465866 -236198487 - MER77 LTR ERV1 -490 115 54 2112 113 7 3 chr1 6467968 6468277 -236196076 - AluSg SINE Alu 0 310 1 23 0 0 0 chr1 6468279 6468302 -236196051 + AT_rich Low_complexity Low_complexity 1 23 0 356 319 125 37 chr1 6469031 6469247 -236195106 - MIR SINE MIR -19 243 9 236 296 23 23 chr1 6469657 6469745 -236194608 - MLT1H LTR MaLR -8 541 454 1526 130 18 0 chr1 6469963 6470186 -236194167 + MER30 DNA MER1_type 4 230 0 320 229 38 61 chr1 6470191 6470322 -236194031 - MIR3 SINE MIR -51 157 30 434 167 78 0 chr1 6470894 6470984 -236193369 - L1MB8 LINE L1 -7 6171 6075 1150 176 90 61 chr1 6472066 6472257 -236192096 - AluJb SINE Alu -9 303 99 1891 128 29 0 chr1 6472257 6472551 -236191802 + AluSq SINE Alu 1 302 0 1150 176 90 61 chr1 6472551 6472636 -236191717 - AluJb SINE Alu -213 99 18 483 212 62 0 chr1 6472636 6472749 -236191604 + MIR SINE MIR 45 164 -98 277 153 176 0 chr1 6473065 6473196 -236191157 - AluSg/x SINE Alu 0 300 147 2404 169 25 20 chr1 6473296 6474243 -236190110 - L1MB8 LINE L1 -255 5923 4864 1009 220 118 58 chr1 6474400 6474782 -236189571 - MLT1I LTR MaLR -2 407 3 509 184 0 0 chr1 6474887 6474974 -236189379 + AluJb SINE Alu 210 296 -16 246 372 0 0 chr1 6475081 6475167 -236189186 + MIR SINE MIR 56 141 -121 2010 131 13 29 chr1 6475344 6475650 -236188703 - AluJb SINE Alu -11 301 1 198 0 0 0 chr1 6476262 6476284 -236188069 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 192 226 0 65 chr1 6476479 6476541 -236187812 - L2 LINE L2 -8 3264 3207 624 190 114 16 chr1 6477104 6477288 -236187065 - HAL1 LINE L1 -651 1856 1655 647 293 111 91 chr1 6477312 6477698 -236186655 + HAL1 LINE L1 142 535 -1972 232 253 41 75 chr1 6477702 6477848 -236186505 - HAL1 LINE L1 -379 2128 1988 253 253 23 11 chr1 6477882 6477969 -236186384 - MIR SINE MIR -2 260 173 2744 207 16 0 chr1 6478503 6479048 -236185305 + L1MA8 LINE L1 5620 6173 -118 448 200 36 9 chr1 6479104 6479214 -236185139 + L1MA8 LINE L1 6177 6289 -2 1932 133 66 3 chr1 6479219 6479505 -236184848 + AluJb SINE Alu 1 304 -8 383 319 0 9 chr1 6479680 6479796 -236184557 - L2 LINE L2 -2 3270 3156 190 284 15 15 chr1 6479895 6479962 -236184391 + L2 LINE L2 3186 3252 -20 2025 125 3 3 chr1 6480310 6480599 -236183754 - AluSx SINE Alu -10 302 14 2228 121 3 0 chr1 6482125 6482431 -236181922 - AluSx SINE Alu 0 312 6 233 173 269 0 chr1 6482845 6482897 -236181456 - L2 LINE L2 -57 3256 3191 499 298 129 0 chr1 6482988 6483213 -236181140 + MIR SINE MIR 9 262 0 406 117 0 0 chr1 6483480 6483540 -236180813 - Alu SINE Alu -9 301 242 1004 102 0 0 chr1 6483540 6483667 -236180686 - AluSq/x SINE Alu -183 129 3 787 139 0 31 chr1 6484557 6484686 -236179667 + FLAM_C SINE Alu 2 126 -7 3229 200 141 93 chr1 6484693 6485251 -236179102 + L1MC3 LINE L1 6500 7030 -755 308 286 24 0 chr1 6485251 6485335 -236179018 + MLT1F1 LTR MaLR 35 120 -447 3229 200 141 93 chr1 6485335 6485575 -236178778 + L1MC3 LINE L1 7030 7257 -528 2160 107 3 27 chr1 6485575 6485874 -236178479 - AluSx SINE Alu -20 292 1 3229 200 141 93 chr1 6485874 6486215 -236178138 + L1MC3 LINE L1 7257 7782 -3 2289 73 45 0 chr1 6486306 6486593 -236177760 + AluY SINE Alu 1 300 -11 456 200 119 31 chr1 6486598 6486773 -236177580 - MIR SINE MIR -60 202 13 738 177 152 0 chr1 6487419 6487583 -236176770 + MER5A DNA MER1_type 1 189 0 2657 47 0 0 chr1 6488877 6489177 -236175176 - AluY SINE Alu -11 300 1 246 182 141 81 chr1 6489245 6489344 -236175009 + L2 LINE L2 3209 3313 0 2191 113 13 10 chr1 6490870 6491171 -236173182 - AluSx SINE Alu -10 302 1 578 262 14 7 chr1 6491438 6491583 -236172770 + MIR SINE MIR 107 252 -10 415 224 27 61 chr1 6491882 6492029 -236172324 - MIR SINE MIR -86 176 35 209 273 198 17 chr1 6492047 6492219 -236172134 + L2 LINE L2 2838 3040 -273 2140 108 3 11 chr1 6492370 6492657 -236171696 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr1 6492664 6492685 -236171668 + (TC)n Simple_repeat Simple_repeat 2 22 0 258 130 14 29 chr1 6492685 6492754 -236171599 + (TA)n Simple_repeat Simple_repeat 2 69 0 2261 126 0 0 chr1 6493047 6493356 -236170997 + AluSg SINE Alu 1 309 -1 1545 158 68 32 chr1 6493359 6493637 -236170716 + AluJb SINE Alu 1 288 -24 22 35 0 0 chr1 6493831 6493860 -236170493 + AT_rich Low_complexity Low_complexity 1 29 0 1932 159 0 25 chr1 6494667 6494981 -236169372 + AluJb SINE Alu 1 306 -6 2213 104 7 0 chr1 6495705 6496002 -236168351 - AluSx SINE Alu -13 299 1 840 119 8 2 chr1 6496971 6497228 -236167125 + AluSx SINE Alu 1 307 -2 1979 136 7 16 chr1 6497520 6497830 -236166523 - AluJb SINE Alu -5 307 1 875 131 46 0 chr1 6497830 6497960 -236166393 - AluJo SINE Alu -176 136 1 2224 130 33 28 chr1 6501233 6501594 -236162759 - THE1B LTR MaLR -1 363 1 592 65 26 0 chr1 6501613 6501690 -236162663 - THE1B LTR MaLR -285 79 1 618 89 0 0 chr1 6501709 6501788 -236162565 - THE1B LTR MaLR -285 79 1 621 76 0 0 chr1 6501807 6501886 -236162467 - THE1B LTR MaLR -285 79 1 848 241 46 9 chr1 6501945 6502161 -236162192 - MER58A DNA MER1_type 0 224 1 331 172 0 0 chr1 6502446 6502504 -236161849 + Charlie5 DNA MER1_type 51 108 -2504 2494 55 3 0 chr1 6503037 6503330 -236161023 + AluY SINE Alu 1 294 -17 1691 113 0 17 chr1 6503368 6503608 -236160745 + AluSq SINE Alu 1 236 -77 633 112 0 0 chr1 6503608 6503691 -236160662 - AluY SINE Alu -227 84 2 25 0 0 0 chr1 6503700 6503725 -236160628 + AT_rich Low_complexity Low_complexity 1 25 0 202 270 0 34 chr1 6503759 6503848 -236160505 + A-rich Low_complexity Low_complexity 5 90 0 205 216 0 0 chr1 6503868 6503905 -236160448 + (TA)n Simple_repeat Simple_repeat 1 37 0 206 164 15 45 chr1 6504112 6504179 -236160174 + (TA)n Simple_repeat Simple_repeat 1 65 0 1734 136 0 79 chr1 6504593 6504909 -236159444 - AluSx SINE Alu -21 291 1 25 31 0 0 chr1 6504910 6504942 -236159411 + AT_rich Low_complexity Low_complexity 1 32 0 235 132 0 0 chr1 6505005 6505043 -236159310 - L1MB7 LINE L1 -9 6175 6138 1032 269 70 18 chr1 6505070 6505420 -236158933 - L1MB8 LINE L1 -1 6177 5808 2603 64 0 3 chr1 6505570 6505882 -236158471 - AluY SINE Alu 0 311 1 2376 102 0 0 chr1 6505884 6506187 -236158166 - AluSx SINE Alu -9 303 1 203 254 0 18 chr1 6506521 6506576 -236157777 + L3 LINE CR1 1517 1570 -7 2330 97 3 3 chr1 6506999 6507298 -236157055 + AluSx SINE Alu 1 299 -13 782 196 0 0 chr1 6508042 6508180 -236156173 - L1MB4 LINE L1 -7 6173 6036 2216 112 3 10 chr1 6508389 6508692 -236155661 - AluSx SINE Alu -11 301 1 2384 88 3 0 chr1 6509662 6509967 -236154386 - AluSx SINE Alu -6 306 1 315 0 0 0 chr1 6509994 6510029 -236154324 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 487 205 116 9 chr1 6510039 6510151 -236154202 + FLAM_A SINE Alu 1 124 -9 294 249 31 0 chr1 6510685 6510773 -236153580 - MIR SINE MIR -65 143 101 1629 102 16 20 chr1 6513458 6513702 -236150651 - MER75B DNA T2_type 0 243 1 2463 91 0 3 chr1 6516799 6517108 -236147245 + AluSx SINE Alu 1 308 -4 1841 160 4 0 chr1 6518322 6518631 -236145722 + AluJo SINE Alu 1 310 0 22 56 0 0 chr1 6518653 6518689 -236145664 + AT_rich Low_complexity Low_complexity 1 36 0 1120 221 18 9 chr1 6518947 6519164 -236145189 - MER58A DNA MER1_type 0 224 6 1856 92 114 7 chr1 6519240 6519511 -236144842 + AluSg SINE Alu 1 300 -10 2629 46 0 0 chr1 6520409 6520711 -236143642 + AluY SINE Alu 1 302 -9 764 145 17 0 chr1 6520787 6520930 -236143423 + AluJb SINE Alu 164 308 0 1416 183 8 12 chr1 6523638 6523889 -236140464 + AluJo SINE Alu 15 264 -48 463 331 97 6 chr1 6524783 6524958 -236139395 + MIR SINE MIR 17 207 -55 24 0 0 0 chr1 6525957 6525981 -236138372 + AT_rich Low_complexity Low_complexity 1 24 0 2357 94 0 3 chr1 6526432 6526729 -236137624 + AluSx SINE Alu 1 296 -16 2509 57 3 3 chr1 6527501 6527801 -236136552 + AluY SINE Alu 1 300 -11 300 111 0 0 chr1 6528332 6528377 -236135976 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr1 6528808 6528831 -236135522 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 6529708 6529731 -236134622 + AT_rich Low_complexity Low_complexity 1 23 0 213 279 22 29 chr1 6532924 6533060 -236131293 + (CCCCG)n Simple_repeat Simple_repeat 4 138 0 313 275 176 6 chr1 6533820 6534002 -236130351 + MIR SINE MIR 2 214 -48 2288 102 3 3 chr1 6534362 6534667 -236129686 + AluSq SINE Alu 1 305 -8 4293 181 55 8 chr1 6536148 6537094 -236127259 - L1MB5 LINE L1 0 6174 5151 2229 110 3 3 chr1 6537094 6537404 -236126949 - AluSq SINE Alu -3 310 1 4293 181 55 8 chr1 6537404 6537857 -236126496 - L1MB5 LINE L1 -1023 5151 4721 2685 201 42 8 chr1 6537858 6538471 -236125882 - L1MB5 LINE L1 -1576 4570 3937 2080 116 0 14 chr1 6538572 6538866 -236125487 - AluSx SINE Alu -22 290 1 1659 134 119 11 chr1 6540036 6540305 -236124048 + AluJo SINE Alu 1 298 -14 614 231 139 24 chr1 6540472 6540617 -236123736 + MIR SINE MIR 5 132 -130 189 0 0 0 chr1 6540617 6540638 -236123715 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 614 231 139 24 chr1 6540638 6540669 -236123684 + MIR SINE MIR 132 158 -104 2543 71 0 0 chr1 6540669 6540980 -236123373 + AluY SINE Alu 1 311 0 614 231 139 24 chr1 6540980 6541010 -236123343 + MIR SINE MIR 158 236 -26 210 305 57 9 chr1 6543718 6543823 -236120530 + L2 LINE L2 2772 2881 -433 256 271 146 58 chr1 6544074 6544403 -236119950 + L2 LINE L2 2953 3310 -3 1711 161 28 14 chr1 6544789 6545080 -236119273 + AluSx SINE Alu 1 295 -17 437 250 33 33 chr1 6545408 6545588 -236118765 + C-rich Low_complexity Low_complexity 1 180 0 23 0 0 0 chr1 6545877 6545900 -236118453 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr1 6545992 6546042 -236118311 + GC_rich Low_complexity Low_complexity 1 50 0 210 248 0 40 chr1 6546073 6546174 -236118179 + (CGGG)n Simple_repeat Simple_repeat 4 100 0 2491 45 3 0 chr1 6547730 6548017 -236116336 + AluY SINE Alu 1 288 -23 2149 116 3 16 chr1 6550377 6550680 -236113673 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr1 6550890 6550914 -236113439 + AT_rich Low_complexity Low_complexity 1 24 0 537 184 43 43 chr1 6550961 6550996 -236113357 - L1MB2 LINE L1 -5 6166 6132 2425 116 11 27 chr1 6550996 6551366 -236112987 + THE1B LTR MaLR 1 364 0 537 184 43 43 chr1 6551366 6551471 -236112882 - L1MB2 LINE L1 -38 6133 6026 200 360 47 0 chr1 6551727 6551813 -236112540 - L2 LINE L2 -5 3267 3178 2655 91 19 16 chr1 6551927 6552301 -236112052 - THE1C LTR MaLR 0 375 1 10315 112 39 9 chr1 6552301 6553835 -236110518 - THE1C-int LTR MaLR 0 1580 1 2634 77 41 6 chr1 6553835 6554197 -236110156 - THE1C LTR MaLR 0 375 1 2211 106 0 20 chr1 6555962 6556265 -236108088 + AluSc SINE Alu 1 297 -12 23 33 0 0 chr1 6556403 6556433 -236107920 + AT_rich Low_complexity Low_complexity 1 30 0 251 233 0 22 chr1 6556602 6556692 -236107661 + (TTATA)n Simple_repeat Simple_repeat 3 90 0 653 270 101 50 chr1 6556987 6557431 -236106922 - L2 LINE L2 -10 3303 2837 351 294 8 84 chr1 6557500 6557738 -236106615 - L1MC5 LINE L1 -33 7928 7709 1111 245 21 24 chr1 6557768 6558058 -236106295 - L1MC4 LINE L1 -1051 6991 6703 2158 123 13 0 chr1 6558070 6558370 -236105983 - AluSx SINE Alu -8 304 1 239 235 37 0 chr1 6558402 6558483 -236105870 - L2 LINE L2 -626 2688 2605 310 29 0 0 chr1 6558538 6558573 -236105780 - U2 snRNA snRNA -153 35 1 720 282 115 27 chr1 6558573 6558903 -236105450 - L2 LINE L2 -769 2545 2187 340 308 121 26 chr1 6558906 6559108 -236105245 - L2 LINE L2 -1791 1523 1287 2465 87 0 3 chr1 6559108 6559417 -236104936 + AluSx SINE Alu 1 308 -4 340 308 121 26 chr1 6559417 6559487 -236104866 - L2 LINE L2 -2027 1287 1225 2428 68 7 23 chr1 6561079 6561386 -236102967 + AluSq SINE Alu 2 303 -10 1826 156 3 29 chr1 6561515 6561823 -236102530 - AluJo SINE Alu -2 310 11 2035 93 57 4 chr1 6561972 6562252 -236102101 - AluSx SINE Alu -16 296 2 1252 122 0 0 chr1 6562435 6562607 -236101746 + AluSg/x SINE Alu 136 307 -5 23 0 0 0 chr1 6563099 6563122 -236101231 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 6563695 6563720 -236100633 + AT_rich Low_complexity Low_complexity 1 25 0 2292 109 0 7 chr1 6564017 6564320 -236100033 - AluSx SINE Alu -11 301 1 462 293 27 14 chr1 6564465 6564612 -236099741 - MER5A DNA MER1_type -23 166 18 2147 118 3 0 chr1 6565062 6565351 -236099002 + AluSx SINE Alu 1 290 -22 250 249 135 21 chr1 6565884 6566077 -236098276 + L1ME4a LINE L1 5842 6056 -65 1819 159 3 10 chr1 6566154 6566455 -236097898 - AluJb SINE Alu -11 301 3 2202 116 3 0 chr1 6566629 6566923 -236097430 - AluSx SINE Alu -17 295 1 312 333 76 8 chr1 6567746 6567878 -236096475 - L2 LINE L2 -2 3311 3171 1981 131 0 27 chr1 6568272 6568569 -236095784 + AluJo SINE Alu 12 300 -12 233 160 0 20 chr1 6568570 6568620 -236095733 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 576 285 21 11 chr1 6568796 6568982 -236095371 - L2 LINE L2 0 3313 3126 339 294 87 33 chr1 6569270 6569454 -236094899 + MIR SINE MIR 7 200 -62 181 264 36 55 chr1 6569507 6569617 -236094736 + MIR SINE MIR 2 109 -153 2448 100 0 0 chr1 6569706 6570015 -236094338 + AluSx SINE Alu 1 309 -3 194 244 0 0 chr1 6570021 6570066 -236094287 + L2 LINE L2 3216 3260 -12 206 283 0 0 chr1 6572476 6572522 -236091831 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1220 218 26 95 chr1 6573172 6573562 -236090791 - MLT1A1 LTR MaLR -2 363 1 2652 49 3 0 chr1 6574100 6574405 -236089948 + AluY SINE Alu 1 306 -5 306 304 73 16 chr1 6575042 6575233 -236089120 + L1MD3 LINE L1 12 213 -6210 1955 245 195 37 chr1 6575274 6576771 -236087582 + L1MD3 LINE L1 994 2908 -4033 637 179 80 0 chr1 6576771 6576883 -236087470 + FLAM_A SINE Alu 1 121 -12 1955 245 195 37 chr1 6576883 6577310 -236087043 + L1MD3 LINE L1 2908 3266 -3675 1229 241 104 14 chr1 6577311 6577459 -236086894 + L1MD3 LINE L1 3578 3711 -3230 2307 86 3 25 chr1 6577459 6577773 -236086580 + AluY SINE Alu 1 307 -4 1229 241 104 14 chr1 6577773 6578064 -236086289 + L1MD3 LINE L1 3711 4057 -2884 279 222 56 0 chr1 6578052 6578124 -236086229 + L1MD3 LINE L1 5904 5979 -962 * 280 150 0 0 chr1 6578129 6578169 -236086184 + 5S rRNA rRNA 3 42 -79 2793 231 175 37 chr1 6578169 6579488 -236084865 + L1MD3 LINE L1 5972 6194 -747 1241 206 164 62 chr1 6579508 6580084 -236084269 + L1MC4a LINE L1 7159 7808 0 340 340 107 0 chr1 6580201 6580398 -236083955 + L2 LINE L2 1954 2171 -1143 712 239 49 22 chr1 6580410 6580594 -236083759 - MER3 DNA MER1_type -14 195 7 332 232 54 97 chr1 6580780 6580965 -236083388 - L1MC4a LINE L1 -1862 5946 5770 1704 113 4 9 chr1 6581435 6581666 -236082687 - MER30 DNA MER1_type 0 230 1 321 245 11 32 chr1 6582599 6582693 -236081660 + MIR SINE MIR 171 262 0 256 320 10 0 chr1 6583047 6583144 -236081209 - MIR SINE MIR -6 256 159 268 355 0 50 chr1 6583693 6583834 -236080519 - MIR SINE MIR -110 152 19 835 176 15 0 chr1 6583879 6584010 -236080343 + FLAM_C SINE Alu 1 133 -10 2304 85 10 0 chr1 6584014 6584308 -236080045 - AluSx SINE Alu -15 297 1 2630 242 107 30 chr1 6584337 6584532 -236079821 + L1MEc LINE L1 2089 2268 -3947 1515 193 3 47 chr1 6584532 6584833 -236079520 + AluJo SINE Alu 1 288 -24 2630 242 107 30 chr1 6584833 6585116 -236079237 + L1MEc LINE L1 2268 2528 -3687 2386 73 3 23 chr1 6585116 6585417 -236078936 + AluSp SINE Alu 1 295 -18 2630 242 107 30 chr1 6585417 6586120 -236078233 + L1MEc LINE L1 2528 3308 -2907 611 201 67 7 chr1 6586116 6586265 -236078088 - L1M4 LINE L1 -1359 4787 4630 * 1672 222 36 13 chr1 6586271 6586658 -236077695 - L1MEc LINE L1 -5531 865 470 590 204 107 51 chr1 6586647 6586863 -236077490 - L1MEc LINE L1 -6129 267 40 * 235 100 0 0 chr1 6587038 6587078 -236077275 + L1MA4 LINE L1 6258 6297 -3 369 308 61 20 chr1 6587105 6587352 -236077001 + L1MC4a LINE L1 5715 5971 -1837 2240 129 3 0 chr1 6587365 6587676 -236076677 + AluSq SINE Alu 1 312 -1 807 107 25 16 chr1 6587677 6587798 -236076555 + AluSc SINE Alu 132 253 -56 532 286 67 0 chr1 6590380 6590558 -236073795 + MIR SINE MIR 2 191 -71 402 287 50 0 chr1 6590593 6590694 -236073659 + L2 LINE L2 3202 3307 -6 2770 193 120 18 chr1 6590872 6591537 -236072816 - MER44D DNA MER2_type 0 605 1 1318 222 33 3 chr1 6592057 6592359 -236071994 - L1ME1 LINE L1 -7 6228 5918 9201 211 93 22 chr1 6592366 6594122 -236070231 - L1ME1 LINE L1 -1123 5092 3462 2153 128 0 3 chr1 6594122 6594428 -236069925 - AluSg SINE Alu -5 305 1 9201 211 93 22 chr1 6594428 6594593 -236069760 - L1ME1 LINE L1 -2753 3462 3310 1038 189 6 0 chr1 6594593 6594757 -236069596 - FRAM SINE Alu -1 165 1 9201 211 93 22 chr1 6594757 6595669 -236068684 - L1ME1 LINE L1 -2905 3310 2043 2107 121 13 3 chr1 6595669 6595975 -236068378 - AluSx SINE Alu -3 309 1 9201 211 93 22 chr1 6595975 6596189 -236068164 - L1ME1 LINE L1 -4172 2043 1846 1759 171 7 14 chr1 6596207 6596513 -236067840 - AluJo SINE Alu 0 304 1 27 73 0 0 chr1 6596534 6596589 -236067764 + AT_rich Low_complexity Low_complexity 1 55 0 345 361 145 7 chr1 6596698 6597160 -236067193 - L2 LINE L2 -1763 1551 1026 193 262 85 43 chr1 6597226 6597367 -236066986 - L2 LINE L2 -2445 869 723 1538 109 0 0 chr1 6597744 6597946 -236066407 - AluSg/x SINE Alu -3 309 108 2100 115 7 3 chr1 6597946 6598234 -236066119 - AluSx SINE Alu -23 289 1 261 299 118 35 chr1 6599000 6599144 -236065209 - MIR SINE MIR -74 188 33 1506 150 45 8 chr1 6599547 6599794 -236064559 + AluJo SINE Alu 1 256 -56 1554 163 45 7 chr1 6599945 6600160 -236064193 - L1MB3 LINE L1 -3 6180 5950 2040 120 32 0 chr1 6600160 6600443 -236063910 - AluSx SINE Alu -8 304 13 1554 163 45 7 chr1 6600443 6600515 -236063838 - L1MB3 LINE L1 -233 5950 5882 8762 152 51 29 chr1 6600528 6602076 -236062277 - L1M4 LINE L1 -3826 2556 1044 1893 155 34 0 chr1 6602076 6602373 -236061980 - AluJo SINE Alu -5 307 1 1710 157 52 0 chr1 6602373 6602659 -236061694 - AluJo SINE Alu -6 306 5 8762 152 51 29 chr1 6602659 6602776 -236061577 - L1M4 LINE L1 -5338 1044 931 1661 96 13 22 chr1 6602776 6603006 -236061347 + MER30 DNA MER1_type 1 228 -2 8762 152 51 29 chr1 6603006 6603144 -236061209 - L1M4 LINE L1 -5451 931 711 1662 160 65 7 chr1 6603147 6603454 -236060899 - L1M4 LINE L1 -6047 337 13 1467 156 67 15 chr1 6603663 6603933 -236060420 - MER7A DNA MER2_type -64 282 1 2160 118 3 0 chr1 6603976 6604272 -236060081 + AluSg SINE Alu 1 297 -13 207 196 0 0 chr1 6605785 6605831 -236058522 + T-rich Low_complexity Low_complexity 1 46 0 365 100 0 0 chr1 6607141 6607191 -236057162 - MER85 DNA T2_type 0 139 90 641 284 48 22 chr1 6607355 6607584 -236056769 - MIR SINE MIR 0 262 28 2416 63 10 3 chr1 6607843 6608145 -236056208 - AluY SINE Alu -7 304 1 1724 188 10 0 chr1 6608779 6609111 -236055242 - AluSx SINE Alu 0 335 1 1892 129 37 0 chr1 6609922 6610214 -236054139 + AluJb SINE Alu 1 302 0 253 68 45 0 chr1 6610245 6610289 -236054064 + (TATTG)n Simple_repeat Simple_repeat 2 47 0 1852 138 14 0 chr1 6610290 6610572 -236053781 - AluSx SINE Alu -26 286 1 349 281 170 7 chr1 6610633 6610786 -236053567 - MER5A DNA MER1_type 0 189 12 2325 71 14 0 chr1 6610983 6611266 -236053087 - AluSq SINE Alu -26 287 1 2320 101 0 0 chr1 6611726 6612024 -236052329 - AluSx SINE Alu -13 299 2 386 267 82 20 chr1 6612096 6612242 -236052111 - MIR SINE MIR -3 259 105 290 284 157 41 chr1 6615480 6615677 -236048676 + L2 LINE L2 2531 2750 -564 1709 128 115 35 chr1 6615703 6615819 -236048534 + AluJb SINE Alu 1 106 -206 2415 92 0 0 chr1 6615819 6616125 -236048228 + AluSg SINE Alu 1 306 -4 1709 128 115 35 chr1 6616125 6616296 -236048057 + AluJb SINE Alu 106 311 -1 266 247 43 21 chr1 6616313 6616406 -236047947 + L1M4 LINE L1 5029 5123 -1023 1110 126 57 77 chr1 6616409 6616603 -236047750 + L1MA8 LINE L1 6040 6236 -55 231 36 0 0 chr1 6616603 6616631 -236047722 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2292 105 0 0 chr1 6616634 6616929 -236047424 + AluSq SINE Alu 1 295 -18 1110 126 57 77 chr1 6616929 6616976 -236047377 + L1MA8 LINE L1 6238 6280 -11 349 169 60 12 chr1 6616969 6617052 -236047301 + L1M4 LINE L1 5114 5200 -946 * 1880 119 0 0 chr1 6617062 6617322 -236047031 + AluSq SINE Alu 6 265 -48 1204 179 9 0 chr1 6617353 6617438 -236046915 - AluJo SINE Alu -92 220 137 1470 191 28 21 chr1 6617438 6617755 -236046598 - AluJb SINE Alu 0 319 1 1204 179 9 0 chr1 6617755 6617886 -236046467 - AluJo SINE Alu -175 137 1 213 122 0 49 chr1 6617914 6617955 -236046398 + L2 LINE L2 3275 3313 0 267 289 125 39 chr1 6617985 6618290 -236046063 - L2 LINE L2 -63 3250 2920 2040 118 0 0 chr1 6618534 6618813 -236045540 + AluSx SINE Alu 1 279 -33 470 45 0 15 chr1 6618834 6618900 -236045453 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 1866 163 10 0 chr1 6619332 6619626 -236044727 + AluJb SINE Alu 7 303 -9 1973 134 3 24 chr1 6620340 6620638 -236043715 - AluSx SINE Alu -20 292 1 239 137 0 39 chr1 6620991 6621042 -236043311 + (TTTAA)n Simple_repeat Simple_repeat 2 50 0 336 219 62 39 chr1 6621207 6621335 -236043018 - L2 LINE L2 -260 3053 2923 1846 151 0 4 chr1 6621483 6621762 -236042591 + AluJb SINE Alu 13 290 -22 826 266 242 3 chr1 6621832 6622317 -236042036 - L2 LINE L2 -2 3311 2706 911 192 6 6 chr1 6622317 6622499 -236041854 - AluJo SINE Alu -4 308 127 2116 136 3 0 chr1 6622516 6622817 -236041536 + AluSx SINE Alu 1 302 -10 630 295 74 8 chr1 6622833 6623091 -236041262 - L2 LINE L2 -755 2559 2285 601 273 33 0 chr1 6623093 6623276 -236041077 - L2 LINE L2 -1415 1899 1711 206 175 53 0 chr1 6623377 6623434 -236040919 - MIR SINE MIR -166 96 37 2145 74 7 42 chr1 6623671 6623980 -236040373 - AluSx SINE Alu -14 298 1 2053 119 50 74 chr1 6624094 6624168 -236040185 - MSTB1 LTR MaLR 0 432 358 631 77 0 0 chr1 6624168 6624246 -236040107 + MADE1 DNA Mariner 1 78 -2 2053 119 50 74 chr1 6624246 6624574 -236039779 - MSTB1 LTR MaLR -74 358 40 923 222 108 90 chr1 6624589 6624734 -236039619 + L2 LINE L2 2929 3070 -243 1299 13 0 0 chr1 6624734 6624883 -236039470 + (TATTG)n Simple_repeat Simple_repeat 2 150 0 2297 64 3 0 chr1 6624883 6625166 -236039187 - AluSp SINE Alu -29 284 1 923 222 108 90 chr1 6625166 6625397 -236038956 + L2 LINE L2 3069 3313 0 407 203 134 80 chr1 6625492 6625679 -236038674 - MLT1F1 LTR MaLR -5 562 366 833 141 36 123 chr1 6625869 6626037 -236038316 - MLT1B LTR MaLR -7 383 237 1851 239 80 15 chr1 6626037 6626634 -236037719 + LTR48B LTR ERV1 5 640 -4 833 141 36 123 chr1 6626634 6626685 -236037668 - MLT1B LTR MaLR -153 237 183 1137 136 61 48 chr1 6627255 6627411 -236036942 - MLT1B LTR MaLR -159 231 70 1644 164 20 10 chr1 6627411 6627709 -236036644 + AluJo SINE Alu 1 301 -11 1137 136 61 48 chr1 6627709 6627780 -236036573 - MLT1B LTR MaLR -320 70 1 2124 120 0 0 chr1 6628616 6628925 -236035428 - AluSq SINE Alu -4 309 1 1617 191 15 61 chr1 6629022 6629350 -236035003 + MLT1B LTR MaLR 1 309 -81 1999 109 3 0 chr1 6629350 6629656 -236034697 + AluSx SINE Alu 1 307 0 1617 191 15 61 chr1 6629656 6629735 -236034618 + MLT1B LTR MaLR 309 390 0 1603 155 129 35 chr1 6630493 6630835 -236033518 + MLT1A2 LTR MaLR 1 374 0 191 263 121 30 chr1 6630881 6630980 -236033373 - MIR SINE MIR -56 152 45 1843 172 50 34 chr1 6631857 6632241 -236032112 + MLT1B LTR MaLR 1 390 0 1621 219 119 30 chr1 6632554 6633051 -236031302 - MER90 LTR ERV1 0 614 74 13088 124 18 25 chr1 6633282 6633775 -236030578 + Tigger1 DNA MER2_type 4 499 -1919 2449 55 3 7 chr1 6633775 6634085 -236030268 + AluSc SINE Alu 1 309 0 13088 124 18 25 chr1 6634085 6635680 -236028673 + Tigger1 DNA MER2_type 499 2077 -341 3600 185 100 3 chr1 6635730 6636450 -236027903 + L1M2b LINE L1 2 791 -6418 2051 133 39 47 chr1 6636450 6636818 -236027535 + THE1C LTR MaLR 1 384 -44 2460 64 0 0 chr1 6636818 6637129 -236027224 - AluY SINE Alu 0 311 1 2051 133 39 47 chr1 6637129 6637174 -236027179 + THE1C LTR MaLR 384 428 0 873 285 169 24 chr1 6637178 6637683 -236026670 + L1M2b LINE L1 1111 1608 -5601 6652 186 198 46 chr1 6637687 6638605 -236025748 + L1M2b LINE L1 947 1725 -5484 2152 108 10 3 chr1 6638605 6638912 -236025441 + AluSc SINE Alu 1 309 0 6652 186 198 46 chr1 6638912 6639348 -236025005 + L1M2b LINE L1 1725 2094 -5115 2305 88 0 0 chr1 6639348 6639642 -236024711 + AluSg SINE Alu 1 294 -16 6652 186 198 46 chr1 6639642 6640350 -236024003 + L1M2b LINE L1 2094 3249 -3960 642 193 0 0 chr1 6640355 6640464 -236023889 + FLAM_A SINE Alu 18 126 -16 15623 157 33 26 chr1 6640468 6641214 -236023139 + L1MDa LINE L1 2571 3310 -3387 1758 174 0 0 chr1 6641214 6641515 -236022838 + AluSx SINE Alu 1 301 0 15623 157 33 26 chr1 6641515 6641742 -236022611 + L1MDa LINE L1 3310 3534 -3163 1685 157 0 20 chr1 6641742 6642036 -236022317 + AluJo SINE Alu 13 300 -12 15623 157 33 26 chr1 6642036 6643810 -236020543 + L1MDa LINE L1 3534 5368 -1329 1573 189 0 0 chr1 6643810 6644106 -236020247 + AluJo SINE Alu 3 298 -14 15623 157 33 26 chr1 6644106 6645435 -236018918 + L1MDa LINE L1 5368 6686 -11 1145 139 414 0 chr1 6645446 6645598 -236018755 + Tigger1 DNA MER2_type 2074 2162 -256 1584 94 115 0 chr1 6645598 6645833 -236018520 - AluSp SINE Alu -15 298 37 1145 139 414 0 chr1 6645833 6645924 -236018429 + Tigger1 DNA MER2_type 2162 2418 0 203 217 188 29 chr1 6645924 6645993 -236018360 + L2 LINE L2 3227 3306 -7 2014 137 0 23 chr1 6646058 6646364 -236017989 - AluJb SINE Alu -13 299 1 191 179 24 36 chr1 6646445 6646529 -236017824 + (TCCA)n Simple_repeat Simple_repeat 4 86 0 775 150 29 0 chr1 6646542 6646715 -236017638 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 991 129 11 0 chr1 6646742 6646920 -236017433 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 229 309 32 16 chr1 6647335 6647458 -236016895 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 216 312 13 52 chr1 6647534 6647688 -236016665 + (CGGGG)n Simple_repeat Simple_repeat 1 148 0 * 224 118 0 59 chr1 6647642 6647693 -236016660 + (TGGGGG)n Simple_repeat Simple_repeat 5 52 0 2146 90 33 0 chr1 6648526 6648826 -236015527 + AluSg SINE Alu 1 310 0 1424 138 59 45 chr1 6649244 6649534 -236014819 + AluJb SINE Alu 12 305 -7 256 311 261 23 chr1 6650323 6650629 -236013724 + L3 LINE CR1 941 1319 -258 * 477 277 48 32 chr1 6650615 6650803 -236013550 + MIR SINE MIR 28 218 -44 1697 166 0 57 chr1 6650897 6651228 -236013125 + AluJb SINE Alu 1 312 0 1573 111 11 73 chr1 6651278 6651539 -236012814 + AluSx SINE Alu 1 245 -67 2159 82 0 3 chr1 6651540 6651832 -236012521 + AluY SINE Alu 1 291 -20 459 108 0 0 chr1 6651832 6651897 -236012456 + AluSx SINE Alu 232 296 -14 413 210 59 25 chr1 6652219 6652338 -236012015 + L1ME2 LINE L1 5590 5712 -409 853 182 0 24 chr1 6652403 6652568 -236011785 + AluJo SINE Alu 39 199 -113 1629 206 157 40 chr1 6652597 6653052 -236011301 + L1MA8 LINE L1 5590 6146 -145 1590 110 0 0 chr1 6653052 6653355 -236010998 + AluSx SINE Alu 54 356 0 1629 206 157 40 chr1 6653355 6653519 -236010834 + L1MA8 LINE L1 6146 6289 -2 556 229 54 34 chr1 6653538 6653743 -236010610 + L1ME2 LINE L1 5878 6086 -78 2214 192 24 34 chr1 6653912 6654225 -236010128 - MLT1D LTR MaLR 0 505 197 1927 120 0 35 chr1 6654225 6654542 -236009811 - AluSx SINE Alu -6 306 1 2214 192 24 34 chr1 6654542 6654734 -236009619 - MLT1D LTR MaLR -308 197 5 193 234 141 16 chr1 6654788 6654852 -236009501 + L2 LINE L2 3200 3271 -1 1429 153 81 0 chr1 6654986 6655275 -236009078 + AluJb SINE Alu 1 310 0 229 341 35 12 chr1 6655678 6655763 -236008590 - MIR3 SINE MIR -109 99 13 198 167 0 0 chr1 6655884 6655920 -236008433 + T-rich Low_complexity Low_complexity 1 36 0 1829 147 30 0 chr1 6655929 6656229 -236008124 - AluJb SINE Alu -3 309 1 183 357 0 0 chr1 6656351 6656421 -236007932 - MER5A DNA MER1_type -110 79 10 1062 93 7 0 chr1 6656455 6656605 -236007748 + AluSg SINE Alu 1 151 -159 613 125 0 0 chr1 6656606 6656694 -236007659 + AluJo/FRAM SINE Alu 203 290 -22 2126 127 0 0 chr1 6656842 6657150 -236007203 + AluSq SINE Alu 1 308 -5 289 214 48 24 chr1 6657992 6658076 -236006277 + L1 LINE L1 4918 5003 -1143 231 211 18 0 chr1 6658096 6658153 -236006200 + L1 LINE L1 3505 3562 -2584 34 24 0 0 chr1 6658314 6658355 -236005998 + AT_rich Low_complexity Low_complexity 1 41 0 2106 105 0 7 chr1 6658458 6658753 -236005600 - AluSx SINE Alu -19 293 1 21 36 0 0 chr1 6658766 6658794 -236005559 + AT_rich Low_complexity Low_complexity 1 28 0 1386 264 82 40 chr1 6658956 6659347 -236005006 - L1M4 LINE L1 -1298 4848 4475 2187 92 0 10 chr1 6659347 6659642 -236004711 - AluSq SINE Alu -21 292 1 1386 264 82 40 chr1 6659642 6659970 -236004383 - L1M4 LINE L1 -1671 4475 4099 2193 180 78 32 chr1 6659971 6660227 -236004126 - LTR42 LTR ERVL 0 495 252 2113 59 0 7 chr1 6660227 6660497 -236003856 - AluY SINE Alu -8 303 36 2193 180 78 32 chr1 6660497 6660642 -236003711 - LTR42 LTR ERVL -243 252 66 2210 123 153 5 chr1 6660642 6661015 -236003338 - MSTA LTR MaLR 0 428 1 2193 180 78 32 chr1 6661015 6661085 -236003268 - LTR42 LTR ERVL -429 66 1 25 51 0 0 chr1 6661186 6661225 -236003128 + AT_rich Low_complexity Low_complexity 1 39 0 999 150 0 6 chr1 6661268 6661428 -236002925 - AluJ SINE Alu -18 294 136 925 226 157 32 chr1 6661477 6661870 -236002483 - MLT1F1 LTR MaLR -21 546 28 1714 174 7 7 chr1 6661870 6662175 -236002178 + AluJb SINE Alu 1 305 -7 2006 124 0 13 chr1 6662250 6662549 -236001804 + AluSx SINE Alu 1 295 -17 811 302 14 14 chr1 6662570 6662921 -236001432 - L1M4 LINE L1 -2456 3690 3340 453 285 94 43 chr1 6662944 6663179 -236001174 - L2 LINE L2 -643 2671 2425 239 222 19 0 chr1 6663223 6663277 -236001076 - MIR SINE MIR -12 250 196 265 244 0 26 chr1 6663277 6663355 -236000998 + (TA)n Simple_repeat Simple_repeat 2 77 0 225 0 0 0 chr1 6663362 6663387 -236000966 + (TG)n Simple_repeat Simple_repeat 2 26 0 431 151 35 47 chr1 6663388 6663474 -236000879 - MIR SINE MIR -58 204 120 193 214 24 0 chr1 6663545 6663587 -236000766 - L2 LINE L2 -959 2355 2313 376 320 12 17 chr1 6663613 6663785 -236000568 - L2 LINE L2 -325 2988 2818 697 142 50 8 chr1 6664355 6664475 -235999878 - AluJ SINE Alu -186 126 2 215 361 37 9 chr1 6664537 6664645 -235999708 + MIR3 SINE MIR 77 187 -21 186 43 0 0 chr1 6664744 6664767 -235999586 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 722 219 3 0 chr1 6664773 6665097 -235999256 + CT-rich Low_complexity Low_complexity 1 324 0 191 61 30 0 chr1 6665126 6665159 -235999194 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1766 134 10 10 chr1 6665159 6665444 -235998909 - AluSx SINE Alu -27 285 1 29 70 0 0 chr1 6665817 6665874 -235998479 + AT_rich Low_complexity Low_complexity 1 57 0 1555 154 0 42 chr1 6665971 6666256 -235998097 + AluJo SINE Alu 34 306 -6 2225 96 3 0 chr1 6666378 6666681 -235997672 + AluSx SINE Alu 1 304 -8 1528 158 3 67 chr1 6666780 6666892 -235997461 + MLT2D LTR ERVL 1 119 -295 2160 85 13 7 chr1 6666892 6667198 -235997155 - AluSp SINE Alu -5 308 1 1528 158 3 67 chr1 6667198 6667212 -235997141 + MLT2D LTR ERVL 119 132 -282 606 63 13 0 chr1 6667212 6667291 -235997062 - MADE1 DNA Mariner 0 80 1 1528 158 3 67 chr1 6667291 6667461 -235996892 + MLT2D LTR ERVL 132 279 -135 887 27 0 9 chr1 6668155 6668266 -235996087 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 1762 144 17 17 chr1 6668724 6669023 -235995330 + AluSx SINE Alu 1 299 -13 1235 185 65 45 chr1 6669121 6669413 -235994940 + AluJo SINE Alu 2 299 -3 2003 111 16 29 chr1 6669635 6669775 -235994578 + AluSx SINE Alu 1 141 -171 1872 128 17 0 chr1 6669775 6670071 -235994282 + AluSx SINE Alu 1 301 -11 2003 111 16 29 chr1 6670071 6670236 -235994117 + AluSx SINE Alu 141 302 -10 1032 97 14 7 chr1 6670418 6670562 -235993791 - THE1B LTR MaLR 0 364 220 2012 103 50 0 chr1 6670564 6670846 -235993507 - AluSg SINE Alu -14 296 1 928 92 0 0 chr1 6670868 6670987 -235993366 - THE1B LTR MaLR -245 119 1 21 0 0 0 chr1 6671004 6671025 -235993328 + AT_rich Low_complexity Low_complexity 1 21 0 2089 104 3 10 chr1 6671031 6671328 -235993025 + AluSx SINE Alu 14 308 -4 2131 89 28 3 chr1 6671378 6671669 -235992684 - AluSx SINE Alu -14 298 1 3534 120 47 34 chr1 6671843 6672461 -235991892 + MER39B LTR ERV1 26 651 -2 1324 126 0 102 chr1 6672469 6672762 -235991591 - AluJo SINE Alu -3 309 47 476 312 158 14 chr1 6673128 6673343 -235991010 - MIR SINE MIR -10 252 7 2330 61 7 0 chr1 6673376 6673673 -235990680 + AluSx SINE Alu 1 299 -13 1936 129 88 38 chr1 6673872 6674214 -235990139 + MER101 LTR ERV1 1 359 -115 1598 153 0 8 chr1 6674207 6674468 -235989885 - AluSx SINE Alu -10 302 44 1972 171 97 95 chr1 6674621 6675231 -235989122 + LTR36 LTR ERV1 1 611 0 783 172 8 0 chr1 6675330 6675464 -235988889 - FLAM_C SINE Alu 0 143 9 192 97 0 0 chr1 6675484 6675515 -235988838 + (T)n Simple_repeat Simple_repeat 1 31 0 1899 67 0 4 chr1 6675515 6675769 -235988584 - AluY SINE Alu -58 253 1 356 181 12 0 chr1 6675939 6676022 -235988331 + C-rich Low_complexity Low_complexity 2 85 0 1401 149 0 5 chr1 6676595 6676809 -235987544 - AluJb SINE Alu -15 297 85 2164 123 0 0 chr1 6676819 6677129 -235987224 - AluSx SINE Alu -2 310 1 2233 96 0 3 chr1 6677139 6677441 -235986912 - AluSx SINE Alu -8 304 4 1052 303 64 30 chr1 6678548 6678687 -235985666 + L1MC/D LINE L1 4532 4665 -1481 2182 94 3 7 chr1 6678687 6678986 -235985367 - AluSx SINE Alu -14 298 1 1052 303 64 30 chr1 6678986 6679516 -235984837 + L1MC/D LINE L1 4665 5224 -922 803 112 0 0 chr1 6679523 6679630 -235984723 + AluJb SINE Alu 5 111 -201 36 23 0 0 chr1 6679647 6679690 -235984663 + AT_rich Low_complexity Low_complexity 1 43 0 222 116 0 0 chr1 6679711 6679754 -235984599 + (TA)n Simple_repeat Simple_repeat 2 44 0 1832 148 0 7 chr1 6679757 6680041 -235984312 - AluSq SINE Alu -31 282 1 760 252 45 77 chr1 6680045 6680139 -235984214 + L1MC/D LINE L1 5219 5315 -1016 1697 145 46 3 chr1 6680139 6680422 -235983931 - AluJb SINE Alu -17 295 1 760 252 45 77 chr1 6680422 6680705 -235983648 + L1MC/D LINE L1 5315 5585 -746 369 313 23 31 chr1 6680853 6680981 -235983372 + MLT1I LTR MaLR 203 329 -80 1958 128 30 0 chr1 6680981 6681277 -235983076 + AluSx SINE Alu 1 305 -7 904 138 14 0 chr1 6681331 6681469 -235982884 + FAM SINE Alu 18 157 -28 1592 149 52 21 chr1 6682131 6682419 -235981934 + AluJb SINE Alu 1 297 -15 2052 116 0 0 chr1 6682809 6683138 -235981215 + AluSq SINE Alu 1 329 0 2220 70 0 11 chr1 6683141 6683455 -235980898 + AluSg1 SINE Alu 1 311 0 1633 250 63 39 chr1 6684118 6684285 -235980068 + L1MD2 LINE L1 122 284 -6256 2045 133 0 0 chr1 6684285 6684585 -235979768 + AluSx SINE Alu 1 300 -12 1633 250 63 39 chr1 6684585 6684650 -235979703 + L1MD2 LINE L1 284 346 -6194 2279 101 0 0 chr1 6684650 6684956 -235979397 - AluSg SINE Alu -4 306 1 1633 250 63 39 chr1 6684956 6685312 -235979041 + L1MD2 LINE L1 346 1025 -5515 1639 165 3 14 chr1 6685314 6685605 -235978748 + AluJo SINE Alu 3 290 -22 519 208 33 0 chr1 6685614 6685734 -235978619 + L1MD2 LINE L1 4805 4928 -1612 4739 129 38 32 chr1 6685736 6686050 -235978303 + Tigger3b DNA MER2_type 1 312 -2716 369 0 0 0 chr1 6686050 6686091 -235978262 + (TA)n Simple_repeat Simple_repeat 1 41 0 1888 116 4 4 chr1 6686100 6686377 -235977976 + AluSx SINE Alu 1 277 -35 275 0 29 0 chr1 6686380 6686415 -235977938 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4739 129 38 32 chr1 6686415 6686787 -235977566 + Tigger3b DNA MER2_type 320 709 -2319 1977 102 42 0 chr1 6686787 6687071 -235977282 + AluSq SINE Alu 1 296 -17 4739 129 38 32 chr1 6687071 6687197 -235977156 + Tigger3b DNA MER2_type 709 833 -398 3599 104 2 4 chr1 6687197 6687677 -235976676 - MER1A DNA MER1_type 0 529 51 2007 119 0 0 chr1 6687677 6687955 -235976398 - AluSx SINE Alu -33 279 2 1721 148 19 0 chr1 6687966 6688230 -235976123 + Tigger3b DNA MER2_type 973 1241 0 1358 228 54 50 chr1 6688231 6688696 -235975657 + L1MD2 LINE L1 4930 5396 -1144 873 133 0 0 chr1 6688701 6688829 -235975524 + FLAM_C SINE Alu 5 132 -11 2285 152 28 54 chr1 6688844 6689273 -235975080 + LTR3 LTR ERVK 5 422 -10 999 125 0 7 chr1 6689283 6689435 -235974918 + AluJb SINE Alu 144 294 -18 3682 221 70 14 chr1 6689438 6690310 -235974043 + L1MD2 LINE L1 5398 6220 -533 1320 147 184 109 chr1 6690310 6690365 -235973988 + MER65A LTR ERV1 1 50 -395 1772 136 45 0 chr1 6690365 6690652 -235973701 + AluSx SINE Alu 1 300 -12 191 61 30 0 chr1 6690656 6690689 -235973664 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1320 147 184 109 chr1 6690689 6690907 -235973446 + MER65A LTR ERV1 52 322 -123 2214 98 0 16 chr1 6690907 6691222 -235973131 - AluSx SINE Alu -2 310 1 1320 147 184 109 chr1 6691222 6691356 -235972997 + MER65A LTR ERV1 322 445 0 3682 221 70 14 chr1 6691356 6691703 -235972650 + L1MD2 LINE L1 6220 6740 -13 2284 80 10 3 chr1 6691723 6692023 -235972330 - AluSq SINE Alu -11 302 1 482 114 29 0 chr1 6692034 6692104 -235972249 - tRNA-Glu-GAG tRNA tRNA -3 72 1 1590 160 3 42 chr1 6692256 6692543 -235971810 + AluJo SINE Alu 26 301 -11 1555 273 67 62 chr1 6692600 6693534 -235970819 + L1ME3A LINE L1 5188 6140 -30 2196 79 24 0 chr1 6693617 6693909 -235970444 + AluSp SINE Alu 1 299 -14 180 277 21 0 chr1 6694140 6694187 -235970166 - MIR SINE MIR -14 248 201 708 111 0 0 chr1 6694409 6694517 -235969836 + (CA)n Simple_repeat Simple_repeat 1 108 0 825 186 32 50 chr1 6694588 6694809 -235969544 - MER20 DNA MER1_type 0 219 3 1542 115 165 11 chr1 6695210 6695470 -235968883 + AluSg SINE Alu 1 300 0 2091 105 0 23 chr1 6695490 6695795 -235968558 + AluSx SINE Alu 1 298 -14 1563 154 16 38 chr1 6695849 6696168 -235968185 + AluJo SINE Alu 1 312 0 2171 110 7 0 chr1 6696184 6696492 -235967861 + AluSg SINE Alu 1 310 0 281 311 39 10 chr1 6697193 6697296 -235967057 + MIR SINE MIR 7 112 -150 1269 137 27 41 chr1 6697305 6697524 -235966829 + AluJo SINE Alu 7 222 -90 314 288 137 7 chr1 6697575 6697714 -235966639 + MIR SINE MIR 106 262 0 1973 105 3 7 chr1 6697889 6698215 -235966138 + AluSq SINE Alu 1 325 0 762 214 46 100 chr1 6698400 6698680 -235965673 - MER5C DNA MER1_type -52 272 8 1508 150 70 28 chr1 6698931 6699218 -235965135 - AluJb SINE Alu -13 299 1 33 25 0 0 chr1 6699779 6699819 -235964534 + AT_rich Low_complexity Low_complexity 1 40 0 2320 87 0 0 chr1 6700793 6701092 -235963261 + AluSx SINE Alu 1 299 -13 679 228 132 0 chr1 6701347 6701514 -235962839 - MIR SINE MIR -6 256 68 218 275 113 65 chr1 6702978 6703207 -235961146 - MIR SINE MIR -3 259 20 202 258 0 32 chr1 6703366 6703388 -235960965 + A-rich Low_complexity Low_complexity 32 53 -38 1648 123 82 10 chr1 6703388 6703680 -235960673 + AluSq SINE Alu 1 313 0 202 258 0 32 chr1 6703680 6703719 -235960634 + A-rich Low_complexity Low_complexity 53 91 0 431 213 11 33 chr1 6703732 6703915 -235960438 + GA-rich Low_complexity Low_complexity 2 180 0 315 0 0 0 chr1 6703962 6703997 -235960356 + (GGA)n Simple_repeat Simple_repeat 1 35 0 378 282 99 50 chr1 6704541 6704722 -235959631 + MIR SINE MIR 59 248 -14 1747 171 10 0 chr1 6705355 6705654 -235958699 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr1 6705926 6705947 -235958406 + AT_rich Low_complexity Low_complexity 1 21 0 2281 86 0 10 chr1 6706021 6706369 -235957984 + AluY SINE Alu 1 345 0 505 219 42 17 chr1 6706931 6707050 -235957303 - Zaphod DNA AcHobo -5 4026 3905 667 248 159 37 chr1 6707060 6707387 -235956966 + Zaphod DNA AcHobo 72 438 -3593 1393 125 5 5 chr1 6707445 6707661 -235956692 - AluJb SINE Alu -13 299 84 990 224 98 35 chr1 6707663 6708154 -235956199 + Zaphod DNA AcHobo 469 990 -3041 907 199 199 30 chr1 6708152 6708264 -235956089 + Zaphod DNA AcHobo 3595 3687 -344 * 2191 98 0 0 chr1 6708264 6708559 -235955794 - AluSx SINE Alu -17 295 1 907 199 199 30 chr1 6708559 6708812 -235955541 + Zaphod DNA AcHobo 3687 4022 -9 180 296 0 0 chr1 6708824 6708868 -235955485 + L2 LINE L2 3270 3313 0 751 286 91 0 chr1 6709034 6709254 -235955099 - MIR SINE MIR -8 254 15 1174 225 126 37 chr1 6709257 6709693 -235954660 - Charlie4a DNA MER1_type -7 501 27 189 354 73 0 chr1 6710006 6710088 -235954265 - MIR SINE MIR 0 262 175 2053 117 0 0 chr1 6710144 6710427 -235953926 + AluSx SINE Alu 1 283 -29 215 273 61 0 chr1 6710473 6710539 -235953814 - MIR SINE MIR -89 173 104 824 225 78 45 chr1 6710561 6710805 -235953548 - MIR SINE MIR -9 253 2 2260 84 0 0 chr1 6711969 6712266 -235952087 - AluSx SINE Alu -15 297 1 855 232 116 41 chr1 6712267 6712560 -235951793 + L2 LINE L2 2995 3309 -4 181 298 47 82 chr1 6712679 6712778 -235951575 - L2 LINE L2 -191 3081 2989 2304 91 3 0 chr1 6712778 6713087 -235951266 + AluSg SINE Alu 1 310 0 181 298 47 82 chr1 6713087 6713158 -235951195 - L2 LINE L2 -283 2989 2917 339 25 0 0 chr1 6713807 6713847 -235950506 + (TCTCCC)n Simple_repeat Simple_repeat 5 44 0 5187 73 34 55 chr1 6713853 6714688 -235949665 + SVA Other Other 50 866 -520 2684 103 25 76 chr1 6714711 6715314 -235949039 + SVA Other Other 476 1047 -339 802 137 0 43 chr1 6715342 6715481 -235948872 + FLAM_C SINE Alu 1 133 0 359 282 53 23 chr1 6716592 6716723 -235947630 - L2 LINE L2 -16 3297 3163 2315 73 0 13 chr1 6716773 6717087 -235947266 - AluSq SINE Alu -3 310 1 742 191 0 0 chr1 6717373 6717504 -235946849 + FLAM_A SINE Alu 1 131 -2 237 329 197 7 chr1 6717755 6717892 -235946461 + MIR SINE MIR 1 163 -99 505 190 42 21 chr1 6717892 6718034 -235946319 + HAL1 LINE L1 2270 2414 -93 288 206 48 48 chr1 6718145 6718208 -235946145 - MLT1I LTR MaLR -107 302 240 252 241 108 0 chr1 6718308 6718391 -235945962 - MLT1I LTR MaLR -272 137 46 1912 109 28 7 chr1 6718669 6718952 -235945401 + AluSx SINE Alu 3 291 -21 1555 133 88 35 chr1 6719226 6719511 -235944842 - AluJo SINE Alu -1 301 2 24 0 0 0 chr1 6719514 6719538 -235944815 + AT_rich Low_complexity Low_complexity 1 24 0 2172 125 0 0 chr1 6719624 6719936 -235944417 + AluSx SINE Alu 1 312 0 2186 91 0 7 chr1 6719945 6720242 -235944111 - AluSc SINE Alu -14 295 1 2248 115 0 0 chr1 6720295 6720607 -235943746 + AluSx SINE Alu 1 312 0 2071 116 7 0 chr1 6720636 6720946 -235943407 + AluSx SINE Alu 1 312 0 3796 137 83 27 chr1 6720946 6721533 -235942820 + L1MA4 LINE L1 5044 5702 -598 2000 138 3 0 chr1 6721533 6721838 -235942515 + AluSx SINE Alu 1 306 -6 3796 137 83 27 chr1 6721838 6722201 -235942152 + L1MA4 LINE L1 5702 6043 -257 1248 71 88 6 chr1 6722210 6722380 -235941973 - MER84 LTR ERVI 0 507 324 863 70 0 0 chr1 6722380 6722495 -235941858 + MER84-int LTR ERV1 1242 1356 -3598 754 83 148 0 chr1 6722495 6722603 -235941750 - MER84 LTR ERVI -383 124 1 1123 171 25 25 chr1 6722603 6722842 -235941511 + L1MA4 LINE L1 6054 6292 -8 181 213 75 150 chr1 6722884 6722964 -235941389 - L2 LINE L2 -18 3295 3222 21 0 0 0 chr1 6724496 6724517 -235939836 + AT_rich Low_complexity Low_complexity 1 21 0 1576 164 39 4 chr1 6724833 6725114 -235939239 - AluJb SINE Alu -15 297 7 1902 126 30 0 chr1 6725128 6725430 -235938923 - AluSx SINE Alu -1 311 1 2101 106 7 3 chr1 6725575 6725868 -235938485 - AluSg1 SINE Alu -15 294 1 733 233 158 0 chr1 6725967 6726169 -235938184 - MIR SINE MIR -21 241 8 483 285 130 36 chr1 6726280 6726557 -235937796 - L1MC/D LINE L1 -2097 5711 5409 349 267 43 26 chr1 6726615 6726731 -235937622 + MER94 DNA DNA 1 118 -16 913 176 0 0 chr1 6726849 6726997 -235937356 + FRAM SINE Alu 1 146 -30 187 312 117 0 chr1 6727311 6727388 -235936965 + L2 LINE L2 3209 3294 -19 288 260 0 0 chr1 6727388 6727461 -235936892 + (TGGG)n Simple_repeat Simple_repeat 3 75 0 820 203 48 0 chr1 6727557 6727744 -235936609 - AluJb SINE Alu -4 308 113 1578 138 20 79 chr1 6728171 6728476 -235935877 + AluJo SINE Alu 1 287 -25 4393 111 33 6 chr1 6728552 6729243 -235935110 - L1MA5A LINE L1 -1 6296 5587 1558 192 0 7 chr1 6729392 6729684 -235934669 + AluJo SINE Alu 1 290 -22 2074 123 17 0 chr1 6729783 6730085 -235934268 + AluSg SINE Alu 1 307 -3 1895 154 0 3 chr1 6730274 6730572 -235933781 - AluSx SINE Alu -15 297 1 268 312 72 8 chr1 6730875 6731000 -235933353 - L1MC/D LINE L1 -1949 5859 5727 2181 92 3 0 chr1 6731340 6731633 -235932720 - AluSg SINE Alu -16 294 1 1568 193 0 13 chr1 6731664 6731965 -235932388 + AluJo SINE Alu 1 297 -15 2289 60 0 0 chr1 6733406 6733718 -235930635 + AluSq SINE Alu 1 312 0 192 152 0 0 chr1 6733730 6733763 -235930590 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1454 159 31 31 chr1 6733935 6734225 -235930128 + AluJo SINE Alu 1 290 -22 338 60 0 20 chr1 6734330 6734380 -235929973 - MADE1 DNA Mariner 0 80 32 885 146 0 0 chr1 6734382 6734512 -235929841 + AluSx SINE Alu 6 135 -178 1849 110 10 40 chr1 6734512 6734811 -235929542 + AluSx SINE Alu 1 290 -22 301 146 427 0 chr1 6734815 6734897 -235929456 + Charlie1 DNA MER1_type 2642 2758 -3 1896 91 0 0 chr1 6735246 6735499 -235928854 + AluSq SINE Alu 60 312 -1 1387 77 0 6 chr1 6735499 6735681 -235928672 + AluSx SINE Alu 120 300 -12 1608 164 0 50 chr1 6735783 6736101 -235928252 + AluJo SINE Alu 1 302 -10 2384 61 0 0 chr1 6736103 6736397 -235927956 + AluY SINE Alu 1 294 -17 2299 88 7 3 chr1 6736603 6736909 -235927444 - AluSq SINE Alu -6 307 1 21 36 0 0 chr1 6737587 6737615 -235926738 + AT_rich Low_complexity Low_complexity 1 28 0 2234 67 0 0 chr1 6738467 6738775 -235925578 - AluY SINE Alu 0 308 1 714 175 32 0 chr1 6739213 6739339 -235925014 - FLAM_C SINE Alu -2 131 2 1657 118 0 0 chr1 6739506 6739743 -235924610 - AluSg SINE Alu -3 307 71 2222 97 0 3 chr1 6739743 6740051 -235924302 - AluSg SINE Alu -1 309 1 581 114 0 0 chr1 6740051 6740130 -235924223 - AluSg SINE Alu -230 80 2 1180 76 0 13 chr1 6740148 6740305 -235924048 - AluSg/x SINE Alu -14 296 142 1780 148 10 13 chr1 6740317 6740620 -235923733 + AluJb SINE Alu 1 302 -10 465 292 31 42 chr1 6740657 6740917 -235923436 - L1MC4a LINE L1 -1864 5944 5688 808 154 114 50 chr1 6740982 6741202 -235923151 - L1MC1 LINE L1 0 6333 6100 1608 189 0 3 chr1 6741271 6741557 -235922796 - AluJb SINE Alu -27 285 1 2214 83 0 17 chr1 6741631 6741933 -235922420 + AluY SINE Alu 2 298 -13 747 159 0 36 chr1 6742615 6742753 -235921600 - FLAM_C SINE Alu 0 143 11 328 262 170 7 chr1 6742886 6743027 -235921326 + MIR SINE MIR 20 183 -79 274 174 113 42 chr1 6743116 6743187 -235921166 - MIR SINE MIR -91 117 40 623 278 57 5 chr1 6743189 6743398 -235920955 - MER58A DNA MER1_type 0 224 5 2260 86 0 0 chr1 6743411 6743713 -235920640 - AluY SINE Alu -9 302 1 2110 100 3 37 chr1 6743721 6744042 -235920311 - AluSx SINE Alu -2 310 1 673 81 101 0 chr1 6744639 6744738 -235919615 - HY1 scRNA scRNA -2 110 2 211 213 0 0 chr1 6744897 6744944 -235919409 - L2 LINE L2 -5 3267 3221 207 255 85 66 chr1 6745085 6745191 -235919162 + L2 LINE L2 2366 2473 -841 1940 143 0 7 chr1 6747260 6747567 -235916786 + AluJo SINE Alu 1 305 -7 231 217 29 29 chr1 6747650 6747719 -235916634 + MLT1K LTR MaLR 25 93 -495 587 279 157 39 chr1 6748123 6748556 -235915797 - L2 LINE L2 -1 3312 2829 2243 91 3 10 chr1 6748725 6749033 -235915320 - AluSx SINE Alu -6 306 1 1787 144 17 7 chr1 6749164 6749463 -235914890 - AluSx SINE Alu -10 302 1 1785 142 24 0 chr1 6749463 6749751 -235914602 - AluJb SINE Alu -17 295 1 1801 138 17 14 chr1 6749809 6750105 -235914248 - AluSx SINE Alu -14 298 2 2110 114 0 3 chr1 6750130 6750429 -235913924 + AluSg SINE Alu 1 298 -12 1100 113 12 27 chr1 6751840 6752442 -235911911 + (CACCAT)n Simple_repeat Simple_repeat 1 593 0 2213 104 0 3 chr1 6752628 6752936 -235911417 - AluSg SINE Alu -2 308 2 2222 100 0 0 chr1 6753294 6753593 -235910760 - AluSq SINE Alu -14 299 1 2174 94 0 25 chr1 6754408 6754726 -235909627 + AluSq SINE Alu 1 310 -3 1208 133 0 122 chr1 6754875 6755138 -235909215 - AluJb SINE Alu -13 299 69 3070 146 25 13 chr1 6755169 6755519 -235908834 - L1MB3 LINE L1 -1 6182 5838 1957 130 3 0 chr1 6755519 6755819 -235908534 - AluSx SINE Alu -11 301 1 3070 146 25 13 chr1 6755819 6756155 -235908198 - L1MB3 LINE L1 -345 5838 5321 376 143 32 0 chr1 6756168 6756231 -235908122 - U6 snRNA snRNA -42 65 1 2051 120 0 7 chr1 6756276 6756568 -235907785 - AluSx SINE Alu -11 301 12 223 70 23 23 chr1 6756675 6756718 -235907635 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 752 211 3 6 chr1 6756740 6757019 -235907334 + CT-rich Low_complexity Low_complexity 1 278 0 351 197 0 0 chr1 6757094 6757160 -235907193 - AluJ/FRAM SINE Alu -4 298 233 * 599 178 24 21 chr1 6757159 6757300 -235907053 - MER34B LTR ERV1 -400 142 1 305 167 0 0 chr1 6757319 6757373 -235906980 + Alu SINE Alu 242 295 -5 306 0 0 0 chr1 6757376 6757410 -235906943 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 868 261 46 79 chr1 6757415 6757548 -235906805 - L1M4 LINE L1 -2166 3980 3844 2415 56 0 3 chr1 6757548 6757850 -235906503 - AluY SINE Alu -10 301 1 868 261 46 79 chr1 6757850 6758058 -235906295 - L1M4 LINE L1 -2302 3844 3631 2182 88 0 3 chr1 6758058 6758355 -235905998 - AluY SINE Alu -15 296 1 868 261 46 79 chr1 6758355 6758382 -235905971 - L1M4 LINE L1 -2515 3631 3605 2153 153 67 20 chr1 6758382 6758786 -235905567 - MSTB LTR MaLR -2 424 2 868 261 46 79 chr1 6758786 6758897 -235905456 - L1M4 LINE L1 -2541 3605 3515 * 987 231 37 26 chr1 6758895 6759163 -235905190 - L1MB5 LINE L1 0 6174 5904 711 173 43 7 chr1 6759174 6759313 -235905040 - L1MB5 LINE L1 -379 5795 5652 2344 103 0 0 chr1 6759321 6759633 -235904720 - AluSx SINE Alu 0 312 1 1641 98 43 35 chr1 6759634 6759890 -235904463 + MSTB1 LTR MaLR 175 432 0 306 248 4 111 chr1 6759890 6760005 -235904348 - L1MEd LINE L1 -5023 1096 1015 2015 146 0 3 chr1 6760005 6760314 -235904039 - AluSx SINE Alu -4 308 1 306 248 4 111 chr1 6760314 6760424 -235903929 - L1MEd LINE L1 -5104 1015 895 1589 174 62 62 chr1 6760426 6760623 -235903730 - MSTD LTR MaLR 0 396 196 2003 121 0 0 chr1 6760623 6760925 -235903428 + AluSx SINE Alu 1 302 0 1589 174 62 62 chr1 6760925 6761083 -235903270 - MSTD LTR MaLR -199 197 40 1636 171 36 13 chr1 6761084 6761389 -235902964 - AluJb SINE Alu 0 312 1 22 56 0 0 chr1 6761540 6761576 -235902777 + AT_rich Low_complexity Low_complexity 1 36 0 716 101 0 0 chr1 6761606 6761705 -235902648 + L1MA2 LINE L1 6206 6304 0 22 0 0 0 chr1 6761705 6761727 -235902626 + AT_rich Low_complexity Low_complexity 1 22 0 1914 129 0 10 chr1 6761788 6762083 -235902270 - AluSx SINE Alu -5 307 16 574 263 75 94 chr1 6762220 6762328 -235902025 - HAL1 LINE L1 -841 1666 1557 2116 114 0 13 chr1 6762328 6762645 -235901708 - AluSq SINE Alu 0 313 1 574 263 75 94 chr1 6762645 6762962 -235901391 - HAL1 LINE L1 -950 1557 1249 1763 79 64 19 chr1 6763038 6763339 -235901014 + AluSg SINE Alu 1 313 0 1957 106 3 20 chr1 6763343 6763635 -235900718 - AluSc SINE Alu -14 295 9 2030 121 14 0 chr1 6763646 6763943 -235900410 - AluSg SINE Alu -9 301 1 314 308 170 11 chr1 6763943 6764125 -235900228 - HAL1 LINE L1 -1477 1030 820 2164 103 7 0 chr1 6764520 6764822 -235899531 - AluSx SINE Alu -8 304 1 236 29 0 29 chr1 6767369 6767403 -235896950 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 1854 91 84 0 chr1 6767403 6767677 -235896676 - AluSg1 SINE Alu -12 297 1 2164 118 7 0 chr1 6767677 6767982 -235896371 - AluSx SINE Alu -5 307 1 2261 81 0 3 chr1 6768761 6769058 -235895295 - AluSg SINE Alu -14 296 1 360 0 0 0 chr1 6769198 6769238 -235895115 + (TC)n Simple_repeat Simple_repeat 2 41 0 2283 82 7 3 chr1 6769253 6769559 -235894794 - AluSp SINE Alu -6 307 1 424 204 204 0 chr1 6769696 6769833 -235894520 + L1MD2 LINE L1 6194 6358 -1 2089 106 0 3 chr1 6770090 6770383 -235893970 - AluSq SINE Alu -21 292 1 2078 101 14 0 chr1 6770566 6770863 -235893490 + AluSx SINE Alu 1 301 -11 196 255 0 21 chr1 6771003 6771050 -235893303 - MIR SINE MIR -62 146 101 1926 100 0 45 chr1 6771076 6771385 -235892968 + AluSp SINE Alu 1 295 -18 329 309 147 16 chr1 6772042 6772233 -235892120 + L2 LINE L2 2549 2764 -550 367 309 216 10 chr1 6772643 6772837 -235891516 - MIR SINE MIR -12 250 17 364 188 188 62 chr1 6778701 6778829 -235885524 + L2 LINE L2 3127 3270 -2 28 0 0 0 chr1 6780120 6780148 -235884205 + GC_rich Low_complexity Low_complexity 1 28 0 189 303 146 18 chr1 6780599 6780764 -235883589 + L2 LINE L2 2226 2411 -903 192 40 0 0 chr1 6782279 6782304 -235882049 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2211 103 31 0 chr1 6782308 6782600 -235881753 - AluSp SINE Alu -12 301 1 796 249 86 20 chr1 6783410 6783655 -235880698 - MIR SINE MIR 0 262 2 362 192 68 89 chr1 6784148 6784294 -235880059 - MIR SINE MIR -25 237 95 242 309 0 0 chr1 6784423 6784504 -235879849 - MIR SINE MIR -123 139 59 479 288 137 24 chr1 6784558 6784850 -235879503 - L2 LINE L2 0 3313 2989 1976 148 3 3 chr1 6785029 6785334 -235879019 - AluJb SINE Alu -7 305 1 189 238 181 29 chr1 6786215 6786320 -235878033 - L2 LINE L2 -3 3310 3190 24 0 0 0 chr1 6787831 6787855 -235876498 + GC_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr1 6788057 6788086 -235876267 + (CCG)n Simple_repeat Simple_repeat 2 30 0 291 386 0 0 chr1 6788581 6788841 -235875512 + (CGGTG)n Simple_repeat Simple_repeat 1 260 0 24 53 0 0 chr1 6791139 6791177 -235873176 + AT_rich Low_complexity Low_complexity 1 38 0 234 0 0 0 chr1 6791495 6791521 -235872832 + (CA)n Simple_repeat Simple_repeat 2 27 0 2472 58 0 0 chr1 6791548 6791841 -235872512 - AluSc SINE Alu -14 295 3 2153 129 7 0 chr1 6792001 6792341 -235872012 - AluSp SINE Alu 0 313 1 2362 98 0 3 chr1 6792675 6792981 -235871372 - AluSq SINE Alu -8 305 1 180 0 0 0 chr1 6793164 6793184 -235871169 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 423 249 217 37 chr1 6793452 6793655 -235870698 + MIR SINE MIR 7 253 -9 2077 139 0 0 chr1 6793655 6793956 -235870397 - AluSx SINE Alu -11 301 1 423 249 217 37 chr1 6793956 6793969 -235870384 + MIR SINE MIR 253 262 0 2312 86 3 0 chr1 6794582 6794872 -235869481 + AluSq SINE Alu 1 291 -22 2015 156 0 3 chr1 6795529 6795830 -235868523 - AluSx SINE Alu -12 300 1 2046 151 0 0 chr1 6796144 6796448 -235867905 + AluJb SINE Alu 1 304 -8 1530 143 18 94 chr1 6796574 6796902 -235867451 - AluJo SINE Alu -9 303 1 285 328 29 23 chr1 6797071 6797245 -235867108 - L2 LINE L2 -2888 426 252 693 306 58 42 chr1 6797293 6797457 -235866896 - L2 LINE L2 0 3313 3153 3222 66 50 0 chr1 6797457 6797839 -235866514 + MLT2A1 LTR ERVL 1 407 -37 336 48 0 0 chr1 6797839 6797881 -235866472 + (TA)n Simple_repeat Simple_repeat 2 43 0 3222 66 50 0 chr1 6797881 6797921 -235866432 + MLT2A1 LTR ERVL 407 444 0 693 306 58 42 chr1 6797921 6798184 -235866169 - L2 LINE L2 -160 3153 2879 264 273 43 117 chr1 6798183 6798314 -235866039 - L2 LINE L2 -675 2639 2539 * 2079 127 0 29 chr1 6798314 6798628 -235865725 + AluJb SINE Alu 1 305 -7 264 273 43 117 chr1 6798628 6798778 -235865575 - L2 LINE L2 -775 2539 2379 2262 119 7 0 chr1 6799423 6799754 -235864599 - AluSx SINE Alu 0 333 1 207 97 0 0 chr1 6800008 6800039 -235864314 - L2 LINE L2 -3 3269 3239 244 278 112 58 chr1 6800376 6800417 -235863936 + L1ME LINE L1 5613 5650 -471 2106 123 14 0 chr1 6800417 6800710 -235863643 + AluSx SINE Alu 1 297 -15 244 278 112 58 chr1 6800710 6800909 -235863444 + L1ME LINE L1 5650 5866 -255 616 211 226 5 chr1 6800910 6801109 -235863244 - MIR SINE MIR -8 254 12 600 150 10 0 chr1 6801151 6801251 -235863102 + L1PA13 LINE L1 6052 6152 -11 701 212 117 35 chr1 6801301 6801532 -235862821 - MLT1K LTR MaLR -2 586 337 247 283 52 98 chr1 6801626 6801799 -235862554 - MLT1K LTR MaLR -392 196 32 1490 270 57 17 chr1 6802213 6802631 -235861722 - LTR16A LTR ERVL 0 450 16 647 261 75 37 chr1 6802679 6802856 -235861497 - L1MEd LINE L1 -3627 2502 2333 1854 186 0 3 chr1 6802856 6803191 -235861162 - AluSx SINE Alu 0 312 1 647 261 75 37 chr1 6803191 6803388 -235860965 - L1MEd LINE L1 -3796 2333 2114 1561 95 0 14 chr1 6803734 6803945 -235860408 - AluSc SINE Alu 0 309 102 883 259 119 99 chr1 6803952 6804311 -235860042 - L1MEd LINE L1 -4957 1162 811 1151 115 8 111 chr1 6804311 6804545 -235859808 - L1PB4 LINE L1 -1 6155 5946 883 259 119 99 chr1 6804545 6804852 -235859501 - L1MEd LINE L1 -5308 811 511 405 0 0 0 chr1 6804852 6804897 -235859456 + (TC)n Simple_repeat Simple_repeat 2 46 0 2174 114 0 3 chr1 6804898 6805188 -235859165 - AluSq SINE Alu -24 289 1 883 259 119 99 chr1 6805188 6805395 -235858958 - L1MEd LINE L1 -5607 512 269 1262 176 38 0 chr1 6805429 6805639 -235858714 - MER58A DNA MER1_type -6 218 1 346 323 35 25 chr1 6805639 6805840 -235858513 - L1MEd LINE L1 -5874 245 43 2128 95 0 0 chr1 6805847 6806109 -235858244 - AluSc SINE Alu -47 262 1 741 177 8 0 chr1 6806109 6806233 -235858120 - L1MC3 LINE L1 -420 7365 7241 936 194 0 6 chr1 6806436 6806601 -235857752 + FAM SINE Alu 1 164 -11 1879 126 7 15 chr1 6806683 6806952 -235857401 - AluSx SINE Alu -45 267 1 2191 59 0 0 chr1 6806985 6807239 -235857114 + AluY SINE Alu 44 297 -14 2498 73 3 0 chr1 6807524 6807827 -235856526 + AluSp SINE Alu 1 304 -9 2028 116 26 0 chr1 6808360 6808662 -235855691 + AluSx SINE Alu 1 310 -2 709 93 19 0 chr1 6810233 6810340 -235854013 + L1MA2 LINE L1 6037 6145 -159 1311 59 24 0 chr1 6810401 6810571 -235853782 + L1MA3 LINE L1 6132 6305 0 6262 40 3 0 chr1 6810849 6811621 -235852732 - L1PA5 LINE L1 0 6154 5409 2158 129 0 3 chr1 6812150 6812460 -235851893 - AluSx SINE Alu -3 309 1 2067 123 4 0 chr1 6812510 6812786 -235851567 + AluSg SINE Alu 1 277 -33 261 0 0 0 chr1 6812788 6812817 -235851536 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 952 203 48 84 chr1 6812823 6813202 -235851151 - MLT1B LTR MaLR -25 365 1 1146 259 68 28 chr1 6813202 6813703 -235850650 + L2 LINE L2 2327 2847 -467 21 0 0 0 chr1 6813747 6813768 -235850585 + AT_rich Low_complexity Low_complexity 1 21 0 2246 81 3 27 chr1 6813769 6814065 -235850288 - AluSx SINE Alu -23 289 1 2006 141 0 34 chr1 6814065 6814249 -235850104 - AluJb SINE Alu -3 309 139 2360 94 0 0 chr1 6814249 6814546 -235849807 - AluSx SINE Alu -15 297 1 2006 141 0 34 chr1 6814546 6814681 -235849672 - AluJb SINE Alu -173 139 1 528 229 33 26 chr1 6814692 6814845 -235849508 - L1MB8 LINE L1 -3 6175 6022 2192 96 0 17 chr1 6814924 6815216 -235849137 + AluSq SINE Alu 23 309 -4 575 234 289 7 chr1 6815222 6815526 -235848827 + L2 LINE L2 2921 3310 -3 1513 170 69 24 chr1 6816037 6816325 -235848028 - AluJo SINE Alu -11 301 1 21 0 0 0 chr1 6816638 6816659 -235847694 + AT_rich Low_complexity Low_complexity 1 21 0 1947 127 0 0 chr1 6816676 6816935 -235847418 + AluSq SINE Alu 1 259 -54 2246 108 13 0 chr1 6817195 6817502 -235846851 - AluSx SINE Alu -1 311 1 1960 125 26 26 chr1 6817521 6817825 -235846528 - AluJb SINE Alu -8 304 1 566 286 171 26 chr1 6818003 6818223 -235846130 - L2 LINE L2 0 3313 3126 2149 120 0 7 chr1 6818223 6818524 -235845829 - AluSx SINE Alu -13 299 1 566 286 171 26 chr1 6818524 6818729 -235845624 - L2 LINE L2 -187 3126 2826 24 0 0 0 chr1 6818949 6818973 -235845380 + AT_rich Low_complexity Low_complexity 1 24 0 574 103 10 10 chr1 6819705 6819802 -235844551 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 2352 100 3 6 chr1 6819803 6820114 -235844239 - AluSp SINE Alu -3 310 1 372 312 24 0 chr1 6820274 6820399 -235843954 + L2 LINE L2 3144 3271 -1 2290 102 0 7 chr1 6820415 6820720 -235843633 + AluSq SINE Alu 1 303 -10 2042 145 16 10 chr1 6821104 6821414 -235842939 - AluJb SINE Alu 0 312 1 669 200 23 8 chr1 6821506 6821636 -235842717 - AluJo SINE Alu -178 134 3 207 139 0 0 chr1 6821919 6821955 -235842398 + (TAG)n Simple_repeat Simple_repeat 1 36 0 1827 150 0 41 chr1 6821957 6822050 -235842303 + AluJb SINE Alu 1 96 -216 2321 105 0 16 chr1 6822050 6822364 -235841989 + AluSq SINE Alu 1 309 -4 1827 150 0 41 chr1 6822364 6822564 -235841789 + AluJb SINE Alu 96 282 -30 2149 110 0 0 chr1 6822581 6822901 -235841452 + AluSx SINE Alu 1 320 0 756 263 43 0 chr1 6822901 6823110 -235841243 - MIR SINE MIR -23 239 22 257 264 16 91 chr1 6823571 6823692 -235840661 + MER5C DNA MER1_type 8 119 -205 210 91 0 0 chr1 6823856 6823889 -235840464 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 185 255 0 0 chr1 6823891 6823938 -235840415 + MER5C DNA MER1_type 278 324 0 2018 103 26 36 chr1 6824023 6824325 -235840028 - AluSx SINE Alu -13 299 1 1127 167 112 73 chr1 6824354 6824641 -235839712 - AluJo SINE Alu -3 299 2 1026 128 116 6 chr1 6824799 6824971 -235839382 + AluJb SINE Alu 113 303 -9 723 176 57 23 chr1 6825108 6825284 -235839069 - MIR SINE MIR -14 248 67 2132 116 3 0 chr1 6825863 6826156 -235838197 - AluSx SINE Alu -18 294 1 2121 136 0 3 chr1 6826564 6826874 -235837479 + AluSx SINE Alu 1 309 -3 2332 101 51 28 chr1 6827138 6827494 -235836859 - THE1B LTR MaLR 0 364 1 2378 86 3 22 chr1 6827579 6827892 -235836461 - AluSp SINE Alu -6 307 1 339 259 44 38 chr1 6828014 6828172 -235836181 + L2 LINE L2 2623 2781 -533 273 119 0 0 chr1 6828422 6828464 -235835889 + (TCC)n Simple_repeat Simple_repeat 1 42 0 1298 129 0 0 chr1 6828464 6828642 -235835711 - AluSg/x SINE Alu -1 311 134 2237 124 0 0 chr1 6828642 6828948 -235835405 - AluSx SINE Alu -6 306 1 691 265 34 0 chr1 6829053 6829257 -235835096 + MIR SINE MIR 1 211 -51 2185 111 0 7 chr1 6829484 6829790 -235834563 - AluSx SINE Alu -8 304 1 2114 83 7 4 chr1 6829986 6830264 -235834089 + AluSx SINE Alu 1 279 -33 489 17 0 0 chr1 6830264 6830322 -235834031 + (CA)n Simple_repeat Simple_repeat 1 58 0 623 306 45 27 chr1 6830394 6830730 -235833623 - L1ME LINE L1 -380 5741 5400 2438 99 3 0 chr1 6830789 6831101 -235833252 - AluSq SINE Alu 0 313 1 216 0 0 0 chr1 6831213 6831237 -235833116 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4718 114 4 4 chr1 6831238 6831922 -235832431 - L1PA16 LINE L1 -13 6153 5470 762 100 0 0 chr1 6831922 6832022 -235832331 - FRAM SINE Alu -18 158 59 1986 116 0 58 chr1 6833023 6833333 -235831020 - AluSx SINE Alu -20 292 1 362 289 15 55 chr1 6833617 6833818 -235830535 + MIR SINE MIR 20 212 -50 1389 106 0 0 chr1 6833847 6834026 -235830327 - AluSx SINE Alu -133 179 1 222 188 0 42 chr1 6834037 6834085 -235830268 + L2 LINE L2 3175 3220 -93 385 242 73 16 chr1 6834201 6834325 -235830028 - L2 LINE L2 -1 3312 3182 2041 140 27 0 chr1 6834575 6834868 -235829485 - AluSx SINE Alu -11 301 1 197 281 18 0 chr1 6835014 6835071 -235829282 - L2 LINE L2 -2 3311 3254 2238 124 0 0 chr1 6835212 6835519 -235828834 - AluSx SINE Alu -5 307 1 888 117 0 0 chr1 6835910 6836030 -235828323 + AluSq/x SINE Alu 1 120 -192 198 0 0 0 chr1 6836031 6836053 -235828300 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2386 115 0 0 chr1 6836249 6836561 -235827792 + AluSx SINE Alu 1 312 0 2199 117 7 0 chr1 6836588 6836897 -235827456 + AluSx SINE Alu 1 311 -1 3775 139 78 27 chr1 6836897 6837484 -235826869 + L1MA4 LINE L1 5044 5700 -600 2110 141 3 0 chr1 6837484 6837789 -235826564 + AluSx SINE Alu 1 306 -6 3775 139 78 27 chr1 6837789 6838152 -235826201 + L1MA4 LINE L1 5700 6043 -257 1246 71 88 6 chr1 6838161 6838331 -235826022 - MER84 LTR ERVI 0 507 324 871 70 0 0 chr1 6838331 6838446 -235825907 + MER84-int LTR ERV1 1242 1356 -3598 753 83 148 0 chr1 6838446 6838554 -235825799 - MER84 LTR ERVI -383 124 1 1140 171 25 25 chr1 6838554 6838793 -235825560 + L1MA4 LINE L1 6054 6292 -8 21 0 0 0 chr1 6840447 6840468 -235823885 + AT_rich Low_complexity Low_complexity 1 21 0 1681 164 39 4 chr1 6840784 6841065 -235823288 - AluJb SINE Alu -15 297 7 1977 128 30 3 chr1 6841079 6841383 -235822970 - AluSx SINE Alu 0 312 1 2220 106 7 3 chr1 6841528 6841820 -235822533 - AluSg1 SINE Alu -16 293 1 647 233 158 0 chr1 6841919 6842121 -235822232 - MIR SINE MIR -21 241 8 470 289 130 36 chr1 6842232 6842509 -235821844 - L1MC/D LINE L1 -2097 5711 5409 338 259 43 26 chr1 6842567 6842683 -235821670 + MER94 DNA DNA 1 118 -16 974 176 0 0 chr1 6842801 6842949 -235821404 + FRAM SINE Alu 1 146 -30 303 266 0 0 chr1 6843334 6843413 -235820940 + (TGGG)n Simple_repeat Simple_repeat 3 81 0 913 198 48 0 chr1 6843509 6843696 -235820657 - AluJb SINE Alu -4 308 113 1697 138 20 79 chr1 6844123 6844428 -235819925 + AluJo SINE Alu 1 287 -25 4428 111 33 6 chr1 6844504 6845195 -235819158 - L1MA5A LINE L1 -1 6296 5587 1683 188 0 7 chr1 6845344 6845636 -235818717 + AluJo SINE Alu 1 290 -22 2193 125 16 0 chr1 6845735 6846040 -235818313 + AluSg SINE Alu 1 310 0 2040 151 0 3 chr1 6846225 6846523 -235817830 - AluSx SINE Alu -15 297 1 271 312 72 8 chr1 6846826 6846951 -235817402 - L1MC/D LINE L1 -1949 5859 5727 2311 92 3 0 chr1 6847291 6847584 -235816769 - AluSg SINE Alu -16 294 1 1666 166 17 40 chr1 6847615 6847916 -235816437 + AluJo SINE Alu 1 294 -18 2411 60 0 0 chr1 6849357 6849669 -235814684 + AluSq SINE Alu 1 312 0 192 152 0 0 chr1 6849681 6849714 -235814639 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1566 159 31 31 chr1 6849886 6850176 -235814177 + AluJo SINE Alu 1 290 -22 342 60 0 20 chr1 6850281 6850331 -235814022 - MADE1 DNA Mariner 0 80 32 936 146 0 0 chr1 6850333 6850463 -235813890 + AluSx SINE Alu 6 135 -178 1948 114 10 40 chr1 6850463 6850762 -235813591 + AluSx SINE Alu 1 290 -22 307 146 427 0 chr1 6850766 6850848 -235813505 + Charlie1 DNA MER1_type 2642 2758 -3 1940 91 4 0 chr1 6851197 6851449 -235812904 + AluSq SINE Alu 60 312 -1 1417 89 0 6 chr1 6851449 6851629 -235812724 + AluSx SINE Alu 118 296 -14 1723 157 0 57 chr1 6851730 6852048 -235812305 + AluJo SINE Alu 1 300 -12 2275 116 7 0 chr1 6852051 6852361 -235811992 + AluSx SINE Alu 1 312 0 2029 128 6 16 chr1 6852391 6852703 -235811650 + AluSx SINE Alu 1 309 -3 189 238 181 29 chr1 6854238 6854343 -235810010 + L2 LINE L2 3190 3310 -3 1976 148 3 3 chr1 6855224 6855529 -235808824 + AluJb SINE Alu 1 305 -7 453 291 137 24 chr1 6855708 6856000 -235808353 + L2 LINE L2 2989 3313 0 242 309 0 0 chr1 6856054 6856135 -235808218 + MIR SINE MIR 59 139 -123 362 192 68 89 chr1 6856264 6856410 -235807943 + MIR SINE MIR 95 237 -25 796 249 86 20 chr1 6856903 6857148 -235807205 + MIR SINE MIR 2 262 0 2222 102 31 0 chr1 6857958 6858251 -235806102 + AluSp SINE Alu 1 302 -11 192 40 0 0 chr1 6858255 6858280 -235806073 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 189 303 146 18 chr1 6859795 6859960 -235804393 - L2 LINE L2 -903 2411 2226 27 0 0 0 chr1 6860411 6860438 -235803915 + GC_rich Low_complexity Low_complexity 1 27 0 364 188 188 62 chr1 6861730 6861858 -235802495 - L2 LINE L2 -2 3270 3127 317 301 46 25 chr1 6867720 6867852 -235796501 + MIR SINE MIR 23 153 -55 268 309 147 16 chr1 6868327 6868518 -235795835 - L2 LINE L2 -550 2764 2549 2052 100 0 45 chr1 6869175 6869484 -235794869 - AluSp SINE Alu -18 295 1 2131 122 17 0 chr1 6869697 6869993 -235794360 - AluSx SINE Alu -11 301 1 1362 170 38 88 chr1 6870000 6870318 -235794035 - LTR9 LTR ERV1 -310 302 1 627 195 118 99 chr1 6870330 6870737 -235793616 + LTR48 LTR ERV1 173 787 0 1957 97 7 70 chr1 6870870 6871169 -235793184 + AluSx SINE Alu 1 280 -32 2027 111 0 28 chr1 6871552 6871871 -235792482 - AluSx SINE Alu 0 311 1 589 182 10 0 chr1 6871871 6871970 -235792383 - FLAM_A SINE Alu -8 134 35 415 141 33 11 chr1 6871979 6872071 -235792282 - AluSc SINE Alu -14 295 202 232 139 0 0 chr1 6972071 6972107 -235692246 - FLAM_A SINE Alu -103 36 1 295 79 0 111 chr1 6972107 6972170 -235692183 + L1MA8 LINE L1 6125 6180 -111 2210 94 0 0 chr1 6972183 6972471 -235691882 + AluY SINE Alu 1 288 -23 232 294 12 24 chr1 6972609 6972694 -235691659 - MLT1K LTR MaLR -494 94 11 2293 98 0 0 chr1 6972701 6973003 -235691350 + AluSx SINE Alu 3 297 -15 963 96 15 3 chr1 6973136 6973281 -235691072 - FRAM SINE Alu -30 146 18 1587 176 39 33 chr1 6973424 6973731 -235690622 + AluJb SINE Alu 1 309 -3 1273 157 0 32 chr1 6973746 6973963 -235690390 + AluJo SINE Alu 1 210 -102 1429 84 0 31 chr1 6973979 6974170 -235690183 - AluSq SINE Alu -52 261 77 889 143 27 27 chr1 6974172 6974319 -235690034 + AluJo/FRAM SINE Alu 156 302 -10 793 117 14 34 chr1 6974372 6974812 -235689541 + (TG)n Simple_repeat Simple_repeat 1 431 0 967 76 45 7 chr1 6974830 6975462 -235688891 + (TG)n Simple_repeat Simple_repeat 1 831 0 739 208 79 82 chr1 6975462 6975920 -235688433 - MLT2B1 LTR ERVL -40 449 1 739 293 18 71 chr1 6975990 6976287 -235688066 - ERVL LTR ERVL -2577 3187 2913 2501 78 0 0 chr1 6976287 6976596 -235687757 + AluSg SINE Alu 1 309 -1 739 293 18 71 chr1 6976596 6976680 -235687673 - ERVL LTR ERVL -2851 2913 2826 2514 58 0 0 chr1 6976804 6977097 -235687256 + AluY SINE Alu 1 293 -18 1854 148 11 0 chr1 6977096 6977374 -235686979 - AluJb SINE Alu -31 281 1 * 1521 155 0 0 chr1 6978420 6978646 -235685707 - AluJb SINE Alu -9 303 78 1904 112 94 0 chr1 6979258 6979535 -235684818 + AluSx SINE Alu 1 303 -9 304 181 24 0 chr1 6979634 6979717 -235684636 + (TA)n Simple_repeat Simple_repeat 1 85 0 303 28 0 0 chr1 6979768 6979804 -235684549 + (CA)n Simple_repeat Simple_repeat 2 37 0 938 159 62 46 chr1 6979813 6980111 -235684242 + MER21A LTR ERV1 34 356 -507 2139 103 0 0 chr1 6980135 6980408 -235683945 + AluSx SINE Alu 25 297 -15 1836 146 25 0 chr1 6980461 6980735 -235683618 - AluJb SINE Alu -31 281 1 2522 86 0 0 chr1 6981741 6982054 -235682299 + AluSq SINE Alu 1 313 0 295 308 75 51 chr1 6982063 6982277 -235682076 - L2 LINE L2 -530 2784 2566 1787 147 40 3 chr1 6982845 6983145 -235681208 + AluJb SINE Alu 1 311 -1 2511 70 0 3 chr1 6983610 6983911 -235680442 + AluSp SINE Alu 1 300 -13 1204 113 24 0 chr1 6983911 6984079 -235680274 + AluSp SINE Alu 134 305 -8 2709 94 13 8 chr1 6984232 6984605 -235679748 + THE1C LTR MaLR 1 375 0 3631 109 73 23 chr1 6984948 6984978 -235679375 + LTR24C LTR ERV1 1 28 -607 828 99 7 92 chr1 6984978 6985119 -235679234 + FLAM_C SINE Alu 5 133 0 3631 109 73 23 chr1 6985119 6985691 -235678662 + LTR24C LTR ERV1 28 633 -2 2290 103 0 3 chr1 6985765 6986067 -235678286 + AluSq SINE Alu 1 301 -12 385 136 61 0 chr1 6986215 6986281 -235678072 - Charlie4 DNA MER1_type -5 1956 1887 2106 103 17 3 chr1 6986288 6986579 -235677774 + AluSc SINE Alu 1 295 -14 1042 84 15 0 chr1 6986579 6986710 -235677643 + AluSq/x SINE Alu 1 133 -180 354 175 10 21 chr1 6987033 6987130 -235677223 + (TA)n Simple_repeat Simple_repeat 2 97 0 304 196 0 0 chr1 6987171 6987227 -235677126 + L1MC4 LINE L1 6648 6703 -1339 2249 110 3 0 chr1 6987230 6987538 -235676815 - AluSp SINE Alu -3 310 2 623 140 0 10 chr1 6987678 6987778 -235676575 - AluSp/q SINE Alu -15 298 200 1869 126 27 33 chr1 6987937 6988238 -235676115 - AluSx SINE Alu -13 299 1 1978 135 17 7 chr1 6988267 6988563 -235675790 + AluY SINE Alu 1 299 -12 780 68 0 0 chr1 6989022 6989125 -235675228 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 484 173 0 17 chr1 6989322 6989421 -235674932 - L1MC4 LINE L1 0 8042 7848 207 319 87 0 chr1 6989493 6989562 -235674791 + MIR SINE MIR 71 145 -63 1094 168 84 26 chr1 6989732 6989958 -235674395 - AluJb SINE Alu -2 310 72 205 350 150 0 chr1 6990689 6990789 -235673564 + L2 LINE L2 3123 3237 -35 186 43 0 0 chr1 6991162 6991185 -235673168 + (T)n Simple_repeat Simple_repeat 1 23 0 2317 95 0 10 chr1 6991285 6991589 -235672764 - AluSc SINE Alu -6 303 3 483 33 0 0 chr1 6991902 6991963 -235672390 + (TG)n Simple_repeat Simple_repeat 2 62 0 414 0 0 0 chr1 6992027 6992073 -235672280 + (TG)n Simple_repeat Simple_repeat 1 46 0 2130 127 7 0 chr1 6992382 6992682 -235671671 + AluSx SINE Alu 1 302 -10 2266 64 0 0 chr1 6992683 6992950 -235671403 + AluY SINE Alu 38 304 -7 2030 154 28 11 chr1 6993397 6993753 -235670600 - THE1B LTR MaLR 0 364 3 1925 156 0 13 chr1 6996310 6996611 -235667742 + AluJb SINE Alu 1 297 -15 1420 221 7 29 chr1 6996890 6997198 -235667155 + AluJo SINE Alu 1 301 -1 445 168 262 54 chr1 6997503 6997652 -235666701 - MER58B DNA MER1_type 0 341 162 284 134 34 84 chr1 6998141 6998260 -235666093 + A-rich Low_complexity Low_complexity 4 116 0 1892 143 10 13 chr1 6998526 6998826 -235665527 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 6999026 6999047 -235665306 + AT_rich Low_complexity Low_complexity 1 21 0 403 272 7 51 chr1 6999441 6999598 -235664755 + MIR SINE MIR 49 197 -65 388 239 111 0 chr1 6999886 7000003 -235664350 + MER5C DNA MER1_type 1 130 -194 2703 100 0 14 chr1 7000070 7000439 -235663914 - THE1B LTR MaLR 0 364 1 274 161 32 48 chr1 7000538 7000600 -235663753 - MLT1J LTR MaLR -450 61 1 721 189 0 0 chr1 7000975 7001097 -235663256 - FLAM_C SINE Alu -16 127 6 1829 151 0 20 chr1 7001130 7001435 -235662918 + AluJb SINE Alu 1 299 -13 183 80 0 0 chr1 7002248 7002273 -235662080 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1974 220 53 19 chr1 7003561 7004034 -235660319 - LTR42 LTR ERVL 0 495 7 211 262 213 16 chr1 7004040 7004162 -235660191 + L2 LINE L2 3168 3313 0 2050 137 3 3 chr1 7004245 7004544 -235659809 - AluSx SINE Alu -13 299 1 2150 134 0 0 chr1 7004554 7004860 -235659493 - AluSx SINE Alu -6 306 1 455 217 25 17 chr1 7005575 7005695 -235658658 + L2 LINE L2 3193 3313 0 336 275 75 8 chr1 7006385 7006505 -235657848 - MIR SINE MIR -112 150 23 318 218 137 48 chr1 7007210 7007334 -235657019 - L1ME3A LINE L1 0 6170 6036 2116 247 96 50 chr1 7007473 7008496 -235655857 - L1MC5 LINE L1 -431 7530 6476 2009 128 10 7 chr1 7008537 7008834 -235655519 - AluSx SINE Alu -12 300 3 1520 181 40 14 chr1 7009150 7009426 -235654927 - AluJo SINE Alu -27 285 3 42 20 0 0 chr1 7009984 7010033 -235654320 + AT_rich Low_complexity Low_complexity 1 49 0 1221 117 6 0 chr1 7010962 7011133 -235653220 - AluSq SINE Alu -12 301 130 961 162 56 178 chr1 7011167 7011488 -235652865 + AluJo SINE Alu 1 282 -30 21 36 0 0 chr1 7011488 7011516 -235652837 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 7011741 7011764 -235652589 + AT_rich Low_complexity Low_complexity 1 23 0 1120 213 138 27 chr1 7011962 7012673 -235651680 + L1ME1 LINE L1 4826 5621 -543 1370 141 89 56 chr1 7012710 7012979 -235651374 + AluJb SINE Alu 11 288 -24 319 189 0 40 chr1 7013003 7013077 -235651276 + L1ME2 LINE L1 5978 6048 -116 2088 122 7 7 chr1 7013677 7013980 -235650373 - AluSx SINE Alu -9 303 1 2018 126 14 0 chr1 7015595 7015889 -235648464 - AluSx SINE Alu -14 298 1 23 33 0 0 chr1 7016465 7016495 -235647858 + AT_rich Low_complexity Low_complexity 1 30 0 2349 63 23 3 chr1 7016511 7016813 -235647540 - AluY SINE Alu -2 309 2 522 308 100 21 chr1 7016815 7017055 -235647298 - L1MC5 LINE L1 -2147 5661 5403 1207 249 84 40 chr1 7017476 7018013 -235646340 - L1MC4 LINE L1 -113 7695 7244 1383 158 83 18 chr1 7018013 7018139 -235646214 + AluJo SINE Alu 5 121 -191 252 0 0 0 chr1 7018139 7018167 -235646186 + (TA)n Simple_repeat Simple_repeat 2 29 0 1383 158 83 18 chr1 7018167 7018318 -235646035 + AluJo SINE Alu 121 300 -12 1207 249 84 40 chr1 7018318 7018402 -235645951 - L1MC4 LINE L1 -564 7244 7165 476 235 95 40 chr1 7018410 7018610 -235645743 - L1MC4 LINE L1 -958 7084 6874 877 259 114 21 chr1 7018774 7019106 -235645247 - L1ME3A LINE L1 -10 6160 5798 2146 55 0 12 chr1 7019106 7019361 -235644992 + AluY SINE Alu 52 303 -8 775 257 32 48 chr1 7019361 7019596 -235644757 + L1M4 LINE L1 2722 2952 -3194 1992 132 14 0 chr1 7019596 7019885 -235644468 + AluJb SINE Alu 1 293 -19 775 257 32 48 chr1 7019885 7019964 -235644389 + L1M4 LINE L1 2952 3031 -3115 422 358 59 4 chr1 7020080 7020334 -235644019 + L1ME1 LINE L1 5680 5947 -223 448 242 17 50 chr1 7020967 7021087 -235643266 + L2 LINE L2 3182 3297 -16 607 146 62 31 chr1 7021450 7021580 -235642773 + L1ME1 LINE L1 6027 6160 -6 1367 170 77 64 chr1 7023003 7023342 -235641011 + Charlie1b DNA MER1_type 57 405 -2356 2357 86 16 0 chr1 7023342 7023645 -235640708 - AluSc SINE Alu -1 308 1 1367 170 77 64 chr1 7023645 7023759 -235640594 + Charlie1b DNA MER1_type 405 516 -7 1715 209 0 0 chr1 7023796 7024092 -235640261 - AluJo SINE Alu -16 296 1 198 296 136 0 chr1 7024653 7024778 -235639575 - L3 LINE CR1 -710 867 726 325 96 19 180 chr1 7024784 7024941 -235639412 - MLT2B3 LTR ERVL 0 554 393 1284 196 151 16 chr1 7024941 7025318 -235639035 - MSTC LTR MaLR 0 428 1 * 2228 197 23 7 chr1 7025318 7025752 -235638601 - MLT2B3 LTR ERVL -107 447 7 190 235 0 39 chr1 7025882 7025933 -235638420 - MIR3 SINE MIR -32 176 128 2192 105 3 0 chr1 7026614 7026910 -235637443 + AluY SINE Alu 1 297 -14 2362 98 0 0 chr1 7027058 7027363 -235636990 - AluSg1 SINE Alu -4 305 1 2206 99 0 13 chr1 7027972 7028276 -235636077 - AluSq SINE Alu -11 302 3 2529 181 87 12 chr1 7028361 7028831 -235635522 - L1MA7 LINE L1 0 6291 5759 543 69 0 0 chr1 7028831 7028903 -235635450 + (CA)n Simple_repeat Simple_repeat 2 73 0 2529 181 87 12 chr1 7028903 7029074 -235635279 - L1MA7 LINE L1 -532 5759 5602 452 162 253 0 chr1 7029177 7029276 -235635077 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 1242 114 5 5 chr1 7029279 7029480 -235634873 + Tigger4(Zombi) DNA MER2_type 2531 2731 0 1027 157 67 17 chr1 7031018 7031225 -235633128 + AluJo SINE Alu 96 311 0 740 188 91 23 chr1 7031619 7031795 -235632558 - MIR SINE MIR -54 208 21 323 324 153 0 chr1 7033006 7033182 -235631171 - MIR SINE MIR -6 256 54 1106 171 23 14 chr1 7033313 7033529 -235630824 + MER20 DNA MER1_type 1 218 -1 372 107 18 0 chr1 7033731 7033787 -235630566 - MER34C LTR ERV1 -492 93 37 1463 87 0 0 chr1 7034398 7034583 -235629770 - AluSp SINE Alu -6 307 123 2185 114 3 13 chr1 7034604 7034919 -235629434 + AluSx SINE Alu 1 312 0 290 305 28 21 chr1 7036453 7036594 -235627759 - MIR3 SINE MIR -53 155 14 205 205 0 0 chr1 7036634 7036673 -235627680 + T-rich Low_complexity Low_complexity 1 39 0 336 193 0 0 chr1 7037552 7037609 -235626744 + AluJ/FLAM SINE Alu 1 57 -245 274 270 27 18 chr1 7037668 7037779 -235626574 + L1MC4 LINE L1 7914 8025 -17 1070 195 69 8 chr1 7038319 7038580 -235625773 - MER58 DNA MER1_type -2140 280 4 1983 162 26 0 chr1 7038995 7039298 -235625055 - AluJo SINE Alu -1 311 1 2079 107 3 30 chr1 7039508 7039807 -235624546 - AluSx SINE Alu -21 291 1 219 286 79 0 chr1 7041923 7041986 -235622367 - MIR SINE MIR -161 101 34 2355 83 0 3 chr1 7042855 7043178 -235621175 + AluSx SINE Alu 1 312 0 6027 239 100 29 chr1 7043508 7044701 -235619652 - L1MC4a LINE L1 -1 7807 6700 2124 114 0 7 chr1 7044701 7045000 -235619353 - AluSg1 SINE Alu -12 297 1 6027 239 100 29 chr1 7045000 7046177 -235618176 - L1MC4a LINE L1 -1108 6700 5269 382 305 58 13 chr1 7046199 7046353 -235618000 - L1MC4a LINE L1 -913 5233 5073 256 273 76 30 chr1 7046578 7046776 -235617577 - L1P LINE L1 -1488 4658 4452 2168 127 13 0 chr1 7046829 7047137 -235617216 - AluSx SINE Alu 0 312 1 205 0 54 54 chr1 7047385 7047422 -235616931 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1723 189 30 0 chr1 7047424 7047720 -235616633 + AluJb SINE Alu 3 307 -5 2276 113 0 3 chr1 7047720 7048020 -235616333 + AluSg SINE Alu 1 299 -11 44 0 0 0 chr1 7048020 7048064 -235616289 + AT_rich Low_complexity Low_complexity 1 44 0 238 304 108 0 chr1 7048159 7048261 -235616092 + Charlie2a DNA MER1_type 16 128 -2654 517 296 101 20 chr1 7048344 7048689 -235615664 + Charlie2a DNA MER1_type 262 634 -2228 1155 201 145 15 chr1 7048958 7049352 -235615001 - L1ME2 LINE L1 -24 6140 5696 333 132 9 0 chr1 7049472 7049528 -235614825 + L1M4 LINE L1 3773 3832 -2314 337 218 135 23 chr1 7049625 7049758 -235614595 + L1M4 LINE L1 4020 4167 -1979 812 190 71 16 chr1 7049924 7050108 -235614245 + MER20 DNA MER1_type 26 219 0 453 183 11 21 chr1 7050587 7050634 -235613719 + MER3 DNA MER1_type 2 47 -162 391 204 7 120 chr1 7050634 7050776 -235613577 - MER3 DNA MER1_type 0 209 84 929 176 7 0 chr1 7050897 7051045 -235613308 + AluJo SINE Alu 1 149 -163 638 186 0 25 chr1 7051045 7051163 -235613190 - AluJb SINE Alu -197 115 1 240 35 0 0 chr1 7052541 7052570 -235611783 + (TG)n Simple_repeat Simple_repeat 2 30 0 1599 147 0 63 chr1 7053290 7053590 -235610763 + AluJb SINE Alu 1 281 -31 235 0 57 0 chr1 7053598 7053633 -235610720 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2245 116 3 3 chr1 7053999 7054309 -235610044 + AluSg SINE Alu 1 310 0 803 287 40 12 chr1 7056117 7056445 -235607908 + MER46C DNA MER2_type 2 338 0 1650 191 0 3 chr1 7056483 7056781 -235607572 - AluJb SINE Alu -14 298 2 324 272 48 16 chr1 7057354 7057479 -235606874 + MIR SINE MIR 31 159 -103 2428 71 0 0 chr1 7057581 7057877 -235606476 - AluSc SINE Alu -13 296 1 217 286 0 0 chr1 7057901 7057950 -235606403 + CT-rich Low_complexity Low_complexity 3 51 0 1592 218 102 54 chr1 7058188 7058546 -235605807 - L1MC4 LINE L1 -149 7893 7491 640 186 0 161 chr1 7058546 7058745 -235605608 - FAM SINE Alu -8 167 1 1592 218 102 54 chr1 7058745 7059011 -235605342 - L1MC4 LINE L1 -551 7491 7239 613 262 87 12 chr1 7059012 7059421 -235604932 - L1MC4 LINE L1 -961 7081 6469 409 328 64 23 chr1 7060104 7060369 -235603984 + L1MEd LINE L1 538 813 -5306 418 286 135 33 chr1 7060379 7060624 -235603729 - MLT1J LTR MaLR -55 456 187 1930 126 7 48 chr1 7060671 7060808 -235603545 + AluSx SINE Alu 1 121 -191 2214 100 3 10 chr1 7060808 7061107 -235603246 + AluSq SINE Alu 1 297 -16 1930 126 7 48 chr1 7061107 7061263 -235603090 + AluSx SINE Alu 121 282 -30 352 309 103 17 chr1 7061345 7061509 -235602844 + L1 LINE L1 3595 3768 -2378 1533 110 53 8 chr1 7061629 7061893 -235602460 - L1MA2 LINE L1 0 6304 6029 251 302 26 73 chr1 7061896 7062088 -235602265 + L1 LINE L1 3908 4090 -2056 1579 181 43 0 chr1 7062245 7062526 -235601827 - AluSx SINE Alu -15 297 5 846 95 0 0 chr1 7062569 7062695 -235601658 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 2892 9 0 0 chr1 7062712 7063028 -235601325 + AluYb8 SINE Alu 1 316 -2 2306 82 0 35 chr1 7064103 7064418 -235599935 + AluY SINE Alu 1 304 -7 21 0 0 0 chr1 7064464 7064485 -235599868 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 11 33 chr1 7064514 7064604 -235599749 - L1MC4 LINE L1 -29 8013 7926 1062 150 0 0 chr1 7064656 7064829 -235599524 + MER46B DNA MER2_type 2 49 -187 1354 221 66 48 chr1 7064880 7064915 -235599438 - L1MC4 LINE L1 -98 7944 7911 824 180 97 61 chr1 7064915 7065143 -235599210 - MER46A DNA MER2_type 0 236 1 1354 221 66 48 chr1 7065143 7065622 -235598731 - L1MC4 LINE L1 -131 7911 7421 1728 137 19 60 chr1 7070490 7070805 -235593548 - AluJb SINE Alu -10 302 1 2259 110 0 3 chr1 7070815 7071115 -235593238 - AluSq SINE Alu -14 299 1 265 248 142 35 chr1 7071759 7071900 -235592453 + L2 LINE L2 3158 3313 0 433 259 132 48 chr1 7071909 7072137 -235592216 + MIR SINE MIR 14 260 -2 32 0 0 0 chr1 7072196 7072228 -235592125 + AT_rich Low_complexity Low_complexity 1 32 0 658 193 0 0 chr1 7072236 7072345 -235592008 - FLAM_C SINE Alu -34 109 1 198 0 0 0 chr1 7072928 7072950 -235591403 + (T)n Simple_repeat Simple_repeat 1 22 0 246 326 44 37 chr1 7073386 7073521 -235590832 + MIR3 SINE MIR 72 207 -1 220 200 0 0 chr1 7073605 7073650 -235590703 + T-rich Low_complexity Low_complexity 4 48 0 221 357 12 12 chr1 7073867 7073951 -235590402 - L2 LINE L2 -73 3199 3116 234 333 78 7 chr1 7074094 7074235 -235590118 - MIR SINE MIR -38 224 74 1092 145 12 6 chr1 7074264 7074436 -235589917 - AluJo SINE Alu -22 290 118 808 174 0 28 chr1 7074465 7074609 -235589744 - FLAM_C SINE Alu -2 141 2 207 100 0 0 chr1 7074750 7074780 -235589573 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 251 234 0 0 chr1 7074781 7074828 -235589525 - MER66A LTR ERV1 -142 336 290 237 179 45 60 chr1 7076506 7076573 -235587780 - L1MD3 LINE L1 -11 7984 7919 * 256 271 0 0 chr1 7076562 7076621 -235587732 - L1MD2 LINE L1 -103 6256 6198 958 234 102 0 chr1 7076624 7076880 -235587473 - L1MD2 LINE L1 -216 6143 5862 765 262 24 36 chr1 7077037 7077289 -235587064 + MIR SINE MIR 14 262 0 208 225 300 0 chr1 7077332 7077412 -235586941 + MIR SINE MIR 159 262 0 1734 149 19 38 chr1 7077455 7077770 -235586583 - AluSx SINE Alu -3 309 1 207 0 0 0 chr1 7078041 7078064 -235586289 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1690 118 110 0 chr1 7078066 7078329 -235586024 - AluSx SINE Alu -20 292 1 1517 151 61 29 chr1 7078331 7078609 -235585744 - AluJo SINE Alu -18 294 8 228 175 222 0 chr1 7078722 7078785 -235585568 + MIR SINE MIR 186 262 0 2092 128 6 6 chr1 7078944 7079257 -235585096 - AluSq SINE Alu 0 313 1 3900 194 69 35 chr1 7079298 7079899 -235584454 + Charlie1 DNA MER1_type 1682 2329 -432 1836 124 0 4 chr1 7079899 7080180 -235584173 - AluSq SINE Alu 0 308 29 3900 194 69 35 chr1 7080180 7080513 -235583840 + Charlie1 DNA MER1_type 2329 2649 -112 21 0 0 0 chr1 7080525 7080546 -235583807 + AT_rich Low_complexity Low_complexity 1 21 0 297 120 0 0 chr1 7081255 7081305 -235583048 + Charlie1 DNA MER1_type 2706 2755 -6 2986 6 0 0 chr1 7081372 7081690 -235582663 + AluYb8 SINE Alu 1 318 0 201 74 0 0 chr1 7081911 7081938 -235582415 + (A)n Simple_repeat Simple_repeat 1 27 0 765 189 8 0 chr1 7082655 7082782 -235581571 + FLAM_C SINE Alu 5 132 -1 309 178 22 22 chr1 7083583 7083673 -235580680 + CT-rich Low_complexity Low_complexity 1 90 0 1643 159 52 3 chr1 7083890 7084179 -235580174 - AluJo SINE Alu -9 303 1 347 197 45 0 chr1 7084180 7084246 -235580107 + L2 LINE L2 3232 3300 -13 447 68 0 0 chr1 7084246 7084305 -235580048 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 1512 130 25 105 chr1 7084458 7084782 -235579571 + AluYb8 SINE Alu 1 298 -20 2064 148 52 27 chr1 7085232 7085636 -235578717 - L1MB3 LINE L1 -28 6155 5742 2228 117 3 3 chr1 7085666 7085974 -235578379 + AluSx SINE Alu 1 308 -4 2180 96 7 7 chr1 7085996 7086289 -235578064 + AluSx SINE Alu 1 293 -19 808 166 11 40 chr1 7086403 7086578 -235577775 - AluJb SINE Alu -6 306 137 433 242 45 32 chr1 7086755 7086912 -235577441 + MER104 DNA Tc2 6 164 -16 1782 156 25 0 chr1 7087886 7088161 -235576192 + AluJb SINE Alu 13 294 -18 1566 260 95 46 chr1 7088167 7088836 -235575517 - L1MC5 LINE L1 -36 7925 7215 2316 84 0 3 chr1 7088836 7089133 -235575220 - AluSg SINE Alu -14 296 1 1566 260 95 46 chr1 7089133 7089198 -235575155 - L1MC5 LINE L1 -746 7215 7155 779 281 38 61 chr1 7089263 7089948 -235574405 - L1MC5 LINE L1 -850 6958 6281 1888 232 56 52 chr1 7090021 7090567 -235573786 - L1MC5 LINE L1 -1862 5946 5394 6285 77 17 45 chr1 7090567 7092186 -235572167 - SVA Other Other -589 1386 213 1888 232 56 52 chr1 7092186 7092267 -235572086 - L1MC5 LINE L1 -2414 5394 5315 181 218 109 0 chr1 7092321 7092376 -235571977 - L2 LINE L2 -12 3260 3200 2150 101 0 3 chr1 7092415 7092743 -235571610 - AluSx SINE Alu 0 327 1 340 272 103 22 chr1 7092925 7093109 -235571244 + Charlie8 DNA MER1_type 15 213 -2204 367 218 26 0 chr1 7093166 7093244 -235571109 + MER33 DNA MER1_type 1 80 -244 339 224 0 0 chr1 7093246 7093322 -235571031 + MER33 DNA MER1_type 249 324 0 442 296 118 39 chr1 7093598 7093801 -235570552 - L1ME2 LINE L1 0 6164 5946 333 0 0 0 chr1 7093811 7093848 -235570505 + (TG)n Simple_repeat Simple_repeat 2 38 0 2458 103 0 0 chr1 7093857 7094167 -235570186 - AluSx SINE Alu -2 310 1 183 100 0 0 chr1 7094189 7094219 -235570134 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 2093 109 0 7 chr1 7094219 7094502 -235569851 - AluSg1 SINE Alu -28 281 1 1262 98 5 16 chr1 7095524 7095708 -235568645 + L1PA8 LINE L1 5991 6172 0 1202 148 0 68 chr1 7096062 7096299 -235568054 - AluJo SINE Alu 0 312 92 1419 188 90 4 chr1 7096411 7096688 -235567665 - AluJo SINE Alu -11 301 1 2211 118 10 0 chr1 7096971 7097268 -235567085 + AluSx SINE Alu 3 302 -10 351 244 44 67 chr1 7097788 7097844 -235566509 - MIR SINE MIR -48 214 158 2193 82 65 0 chr1 7097844 7098136 -235566217 - AluY SINE Alu 0 311 1 351 244 44 67 chr1 7098136 7098214 -235566139 - MIR SINE MIR -104 158 83 202 283 75 0 chr1 7098889 7098942 -235565411 - L3 LINE CR1 -21 1556 1500 238 189 257 27 chr1 7099296 7099370 -235564983 - MIR3 SINE MIR -25 183 93 1597 168 0 82 chr1 7099477 7099662 -235564691 - AluJb SINE Alu -11 301 153 1545 173 20 47 chr1 7099662 7099963 -235564390 - AluJb SINE Alu -19 293 1 1597 168 0 82 chr1 7099963 7100105 -235564248 - AluJb SINE Alu -159 153 1 1092 146 5 66 chr1 7100938 7101119 -235563234 - AluJb SINE Alu 0 312 140 2310 89 23 0 chr1 7101119 7101422 -235562931 - AluSp SINE Alu -3 310 1 1092 146 5 66 chr1 7101422 7101471 -235562882 - AluJb SINE Alu -172 140 90 3690 235 111 64 chr1 7101600 7102207 -235562146 - L1ME1 LINE L1 -6 6160 5583 2063 90 62 7 chr1 7102207 7102497 -235561856 - AluSc SINE Alu 0 309 4 3690 235 111 64 chr1 7102497 7102511 -235561842 - L1ME1 LINE L1 -583 5583 5571 2408 70 0 13 chr1 7102511 7102812 -235561541 - AluY SINE Alu -14 297 1 3690 235 111 64 chr1 7102812 7103199 -235561154 - L1ME1 LINE L1 -595 5571 5203 1595 154 41 69 chr1 7103199 7103518 -235560835 - AluJo SINE Alu -2 310 1 3690 235 111 64 chr1 7103518 7104038 -235560315 - L1ME1 LINE L1 -963 5203 4708 2353 110 0 0 chr1 7104038 7104347 -235560006 + AluSq SINE Alu 4 312 -1 3690 235 111 64 chr1 7104347 7104479 -235559874 - L1ME1 LINE L1 -1458 4708 4584 712 169 7 70 chr1 7104479 7104621 -235559732 - FLAM_A SINE Alu 0 133 1 3690 235 111 64 chr1 7104621 7104986 -235559367 - L1ME1 LINE L1 -1582 4584 4237 1701 174 37 0 chr1 7104986 7105280 -235559073 - AluJb SINE Alu -7 305 1 3690 235 111 64 chr1 7105280 7105795 -235558558 - L1ME1 LINE L1 -1929 4237 3492 207 100 0 0 chr1 7105795 7105825 -235558528 + (T)n Simple_repeat Simple_repeat 1 30 0 1957 244 136 30 chr1 7105860 7106483 -235557870 - L1ME1 LINE L1 -2885 3261 2705 2413 80 0 3 chr1 7106483 7106784 -235557569 + AluSc SINE Alu 1 300 -9 1957 244 136 30 chr1 7106784 7107171 -235557182 - L1ME1 LINE L1 -3441 2705 2144 2157 114 3 0 chr1 7107211 7107501 -235556852 - AluSp SINE Alu -22 291 1 2127 112 10 0 chr1 7107858 7108152 -235556201 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr1 7108153 7108184 -235556169 + AT_rich Low_complexity Low_complexity 1 31 0 240 313 15 0 chr1 7108907 7108974 -235555379 + L2 LINE L2 3205 3272 0 24 67 0 0 chr1 7109678 7109723 -235554630 + AT_rich Low_complexity Low_complexity 1 45 0 2362 88 7 10 chr1 7109873 7110181 -235554172 - AluY SINE Alu -4 307 1 859 162 0 13 chr1 7110399 7110553 -235553800 - L1MB8 LINE L1 -190 5988 5837 267 300 150 46 chr1 7110569 7110896 -235553457 - L3 LINE CR1 -422 1155 795 377 278 31 0 chr1 7110953 7111050 -235553303 - MIR SINE MIR -18 244 145 2253 96 3 0 chr1 7111167 7111460 -235552893 + AluSc SINE Alu 1 294 -15 2319 111 0 0 chr1 7111845 7112142 -235552211 + AluSx SINE Alu 1 297 -15 2315 111 0 0 chr1 7112145 7112452 -235551901 + AluSg SINE Alu 3 309 -1 1287 234 122 20 chr1 7112748 7113206 -235551147 - MLT1D LTR MaLR 0 505 1 54 40 0 0 chr1 7113217 7113292 -235551061 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr1 7113329 7113353 -235551000 + AT_rich Low_complexity Low_complexity 1 24 0 800 168 0 0 chr1 7113353 7113478 -235550875 - FLAM_C SINE Alu -18 125 1 271 288 158 17 chr1 7116276 7116453 -235547900 + MIR SINE MIR 52 253 -9 2327 108 0 16 chr1 7116869 7117185 -235547168 - AluSx SINE Alu -1 311 1 2333 100 0 0 chr1 7117190 7117489 -235546864 - AluSx SINE Alu -13 299 1 202 235 123 12 chr1 7119168 7119249 -235545104 + L2 LINE L2 3182 3271 -1 2200 118 0 0 chr1 7120469 7120757 -235543596 + AluSq SINE Alu 1 288 -25 1695 186 10 3 chr1 7120767 7121063 -235543290 + AluJo SINE Alu 1 298 -14 1003 174 60 5 chr1 7121068 7121269 -235543084 + AluJb SINE Alu 89 300 -12 293 164 75 15 chr1 7121280 7121347 -235543006 + L2 LINE L2 3201 3271 -1 2409 76 7 7 chr1 7121464 7121767 -235542586 + AluSc SINE Alu 1 303 -6 2168 86 38 3 chr1 7122028 7122318 -235542035 + AluSx SINE Alu 1 300 -12 2022 122 0 31 chr1 7122925 7123244 -235541109 - AluSg SINE Alu -1 309 1 744 278 5 5 chr1 7123450 7123641 -235540712 - MIR SINE MIR -59 203 13 1599 171 16 44 chr1 7123654 7123975 -235540378 - AluJb SINE Alu 0 312 1 32 43 0 0 chr1 7124369 7124415 -235539938 + AT_rich Low_complexity Low_complexity 1 46 0 2393 81 0 0 chr1 7124637 7124945 -235539408 + AluY SINE Alu 1 308 -3 203 231 154 51 chr1 7125030 7125147 -235539206 - L2 LINE L2 -5 3308 3180 296 235 59 0 chr1 7125398 7125466 -235538887 + L2 LINE L2 3190 3261 -52 500 232 120 21 chr1 7126063 7126205 -235538148 + MIR SINE MIR 44 199 -63 578 218 0 63 chr1 7127033 7127175 -235537178 - FLAM_A SINE Alu 0 133 1 399 288 297 10 chr1 7127635 7128294 -235536059 - L2 LINE L2 -1 3312 2459 676 160 25 8 chr1 7129671 7129820 -235534533 - FLAM_A SINE Alu 0 151 1 1185 162 0 40 chr1 7130513 7130741 -235533612 + AluJo SINE Alu 87 305 -7 237 108 0 0 chr1 7130784 7130821 -235533532 + (TCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr1 7133976 7134003 -235530350 + (TG)n Simple_repeat Simple_repeat 1 27 0 1892 144 7 0 chr1 7134680 7134979 -235529374 + AluSx SINE Alu 1 301 -11 1023 256 133 36 chr1 7135493 7135938 -235528415 - L2 LINE L2 0 3313 2826 226 358 51 7 chr1 7136760 7136897 -235527456 + L2 LINE L2 3170 3312 -1 514 101 0 0 chr1 7137270 7137349 -235527004 + AluJ/FRAM SINE Alu 232 310 -2 239 232 72 120 chr1 7137611 7137736 -235526617 + MIR3 SINE MIR 9 127 -81 2067 111 0 3 chr1 7137744 7138055 -235526298 - AluSg SINE Alu 0 310 2 2080 119 0 10 chr1 7138763 7139057 -235525296 - AluSx SINE Alu -21 291 1 195 341 24 0 chr1 7140382 7140467 -235523886 - L2 LINE L2 -205 3067 2981 383 226 57 28 chr1 7140753 7140859 -235523494 + MER5B DNA MER1_type 12 120 -58 200 260 244 65 chr1 7140951 7141074 -235523279 - MER5B DNA MER1_type -21 157 13 2188 106 0 3 chr1 7141131 7141433 -235522920 - AluSx SINE Alu -11 301 1 384 274 160 23 chr1 7142424 7142599 -235521754 - L2 LINE L2 -2 3311 3113 980 97 0 0 chr1 7143706 7143888 -235520465 - AluSg SINE Alu 0 327 146 212 216 0 0 chr1 7143907 7143944 -235520409 + L2 LINE L2 3230 3266 -6 1181 81 0 0 chr1 7143956 7144105 -235520248 - AluSg SINE Alu -161 149 1 186 270 0 0 chr1 7144387 7144424 -235519929 - L2 LINE L2 -6 3266 3230 6663 121 6 119 chr1 7144931 7145603 -235518750 + L1P LINE L1 826 1258 -4888 2187 63 20 20 chr1 7145603 7145906 -235518447 + AluY SINE Alu 1 303 -8 6663 121 6 119 chr1 7145906 7146634 -235517719 + L1P LINE L1 1258 2067 -4079 2026 58 4 8 chr1 7146631 7146889 -235517464 + L1PA7 LINE L1 5878 6134 -20 * 519 172 172 22 chr1 7147466 7147646 -235516707 - Charlie2 DNA MER1_type -31 2831 2625 2081 177 33 3 chr1 7147663 7148024 -235516329 - MSTA LTR MaLR -54 374 3 9117 168 33 12 chr1 7148026 7149102 -235515251 - MSTA-int LTR MaLR 0 1651 528 2037 107 33 3 chr1 7149102 7149401 -235514952 - AluSg SINE Alu -2 308 1 9117 168 33 12 chr1 7149401 7149941 -235514412 - MSTA-int LTR MaLR -1123 528 1 1326 159 14 0 chr1 7149944 7150151 -235514202 - MSTA LTR MaLR -3 425 216 619 237 93 34 chr1 7150151 7150176 -235514177 - Charlie2 DNA MER1_type -232 2630 2608 1894 133 10 17 chr1 7150176 7150478 -235513875 - AluSx SINE Alu -11 301 2 619 237 93 34 chr1 7150478 7150773 -235513580 - Charlie2 DNA MER1_type -254 2608 2291 890 261 53 0 chr1 7150820 7151084 -235513269 - Charlie2 DNA MER1_type -728 2134 1857 329 268 105 67 chr1 7151087 7151296 -235513057 - Charlie2 DNA MER1_type -2457 325 109 245 204 56 0 chr1 7151604 7151658 -235512695 + Charlie4a DNA MER1_type 276 332 -176 1998 107 7 39 chr1 7151667 7151977 -235512376 - AluSx SINE Alu -12 300 1 2096 92 14 3 chr1 7151977 7152269 -235512084 - AluSc SINE Alu -14 295 1 385 136 61 0 chr1 7152276 7152342 -235512011 + Charlie4a DNA MER1_type 434 503 -5 2203 96 0 3 chr1 7152490 7152792 -235511561 - AluSq SINE Alu -12 301 1 490 137 0 0 chr1 7154075 7154148 -235510205 + L1MC1 LINE L1 6254 6326 -7 1407 182 22 35 chr1 7154293 7154606 -235509747 + AluJo SINE Alu 1 309 -3 1416 169 63 3 chr1 7155651 7155953 -235508400 + MER33 DNA MER1_type 1 320 -4 2103 104 0 0 chr1 7156238 7156544 -235507809 - AluSg SINE Alu 0 306 1 497 273 100 45 chr1 7157200 7157420 -235506933 - L2 LINE L2 0 3313 3082 1022 269 110 63 chr1 7157506 7158107 -235506246 - MLT1G LTR MaLR 0 590 1 243 218 13 39 chr1 7158174 7158252 -235506101 + MIR3 SINE MIR 127 202 -6 2794 10 0 0 chr1 7158723 7159035 -235505318 + AluYb8 SINE Alu 1 312 -6 255 61 0 0 chr1 7159570 7159603 -235504750 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 585 124 39 8 chr1 7160818 7160947 -235503406 + Tigger3(Golem) DNA MER2_type 2499 2631 -398 3639 133 15 0 chr1 7160947 7161466 -235502887 - MER1A DNA MER1_type 0 527 1 255 338 93 13 chr1 7161678 7161829 -235502524 + MIR SINE MIR 24 186 -76 577 250 16 0 chr1 7163366 7163490 -235500863 + MIR SINE MIR 120 245 -17 200 59 29 0 chr1 7163765 7163799 -235500554 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 207 0 0 0 chr1 7164925 7164948 -235499405 + (T)n Simple_repeat Simple_repeat 1 23 0 360 273 258 11 chr1 7165048 7165315 -235499038 - L2 LINE L2 -962 2352 2020 215 278 0 0 chr1 7165371 7165425 -235498928 + L2 LINE L2 2560 2613 -701 859 152 0 0 chr1 7165432 7165557 -235498796 + FLAM_C SINE Alu 3 127 -6 2361 57 14 0 chr1 7166117 7166413 -235497940 - AluY SINE Alu -11 300 1 633 237 184 4 chr1 7166544 7166748 -235497605 + MIR SINE MIR 23 256 -6 191 130 0 22 chr1 7168668 7168714 -235495639 + (CGGGGG)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr1 7168763 7168785 -235495568 + GC_rich Low_complexity Low_complexity 1 22 0 48 18 0 0 chr1 7168819 7168874 -235495479 + GC_rich Low_complexity Low_complexity 1 55 0 204 40 0 0 chr1 7172264 7172289 -235492064 + (TC)n Simple_repeat Simple_repeat 2 26 0 631 161 98 18 chr1 7172289 7172401 -235491952 - FLAM_A SINE Alu -12 121 1 572 256 46 17 chr1 7172745 7172931 -235491422 + MIR SINE MIR 33 226 -36 181 158 53 26 chr1 7173244 7173282 -235491071 + L2 LINE L2 358 396 -2918 224 346 49 47 chr1 7174581 7174909 -235489444 - L2 LINE L2 -223 3049 2722 26 0 0 0 chr1 7175147 7175173 -235489180 + AT_rich Low_complexity Low_complexity 1 26 0 299 301 240 0 chr1 7175626 7175772 -235488581 + MER5A DNA MER1_type 9 189 0 2578 61 0 3 chr1 7175973 7176283 -235488070 - AluY SINE Alu -2 309 1 2168 89 0 40 chr1 7178019 7178322 -235486031 - AluSc SINE Alu -18 291 1 2196 125 3 0 chr1 7178509 7178813 -235485540 - AluSp SINE Alu -8 305 1 2022 144 23 3 chr1 7178943 7179248 -235485105 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr1 7179248 7179270 -235485083 + AT_rich Low_complexity Low_complexity 1 22 0 870 276 44 8 chr1 7180862 7181112 -235483241 - MLT1H1 LTR MaLR -39 516 258 470 155 136 19 chr1 7181172 7181275 -235483078 + FLAM_A SINE Alu 22 136 -6 268 320 33 26 chr1 7182034 7182187 -235482166 - L3 LINE CR1 -163 1414 1261 234 0 0 0 chr1 7182591 7182617 -235481736 + (A)n Simple_repeat Simple_repeat 1 26 0 195 343 38 9 chr1 7184861 7184966 -235479387 - MIR SINE MIR -51 211 104 871 205 20 37 chr1 7185943 7186158 -235478195 - L1MD3 LINE L1 0 8040 7844 1336 142 127 40 chr1 7186233 7186486 -235477867 + AluJb SINE Alu 17 291 -21 369 261 126 85 chr1 7186617 7186655 -235477698 - L1ME4a LINE L1 -57 6064 6029 2302 95 7 0 chr1 7186655 7186949 -235477404 + AluSc SINE Alu 1 296 -13 369 261 126 85 chr1 7186949 7187473 -235476880 - L1ME4a LINE L1 -92 6029 5479 660 128 29 20 chr1 7188043 7188145 -235476208 + AluJo/FLAM SINE Alu 14 116 -196 2239 88 40 3 chr1 7188145 7188442 -235475911 - AluY SINE Alu -3 308 1 2323 96 0 3 chr1 7188461 7188764 -235475589 + AluSc SINE Alu 1 302 -7 404 254 108 88 chr1 7188766 7188924 -235475429 + L1ME LINE L1 3059 3212 -2934 1639 120 0 0 chr1 7188924 7189140 -235475213 + AluSq SINE Alu 1 216 -97 404 254 108 88 chr1 7189140 7189393 -235474960 + L1ME LINE L1 3212 3459 -2687 2361 91 0 0 chr1 7189393 7189691 -235474662 + AluSg SINE Alu 1 298 -12 404 254 108 88 chr1 7189691 7190035 -235474318 + L1ME LINE L1 3459 3830 -2316 1060 209 225 57 chr1 7190057 7190423 -235473930 - MLT1G LTR MaLR 0 590 131 2238 81 7 18 chr1 7190423 7190731 -235473622 + AluSc SINE Alu 1 305 0 1060 209 225 57 chr1 7190731 7190817 -235473536 - MLT1G LTR MaLR -459 131 61 1836 167 14 0 chr1 7190817 7191110 -235473243 - AluJb SINE Alu -13 299 3 213 39 0 0 chr1 7191122 7191148 -235473205 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 621 155 0 0 chr1 7191150 7191253 -235473100 - AluSg/x SINE Alu -32 278 176 477 206 72 0 chr1 7191257 7191354 -235472999 - MLT1G LTR MaLR -490 105 2 306 0 0 0 chr1 7191517 7191551 -235472802 + (TA)n Simple_repeat Simple_repeat 2 35 0 1855 138 0 46 chr1 7191553 7191857 -235472496 - AluJb SINE Alu -11 301 12 267 293 24 0 chr1 7191873 7191955 -235472398 + L1ME LINE L1 4029 4112 -2034 1711 184 7 0 chr1 7192038 7192316 -235472037 + AluJo SINE Alu 1 280 -32 297 0 0 0 chr1 7192334 7192367 -235471986 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 280 157 39 chr1 7192377 7192563 -235471790 + L1ME LINE L1 4176 4339 -1827 682 227 0 0 chr1 7192563 7192691 -235471662 + FLAM_A SINE Alu 1 128 -5 483 280 157 39 chr1 7192691 7193717 -235470636 + L1ME LINE L1 4339 5541 -625 264 229 202 9 chr1 7194592 7194701 -235469652 + L2 LINE L2 3142 3271 -1 345 348 21 0 chr1 7195109 7195250 -235469103 + MIR SINE MIR 49 192 -70 591 294 72 17 chr1 7195251 7195486 -235468867 - MIR SINE MIR -9 253 6 802 148 32 19 chr1 7195771 7195926 -235468427 + L1MB5 LINE L1 6010 6166 -8 2344 100 0 3 chr1 7197095 7197395 -235466958 - AluSg SINE Alu -11 299 1 490 226 90 0 chr1 7198036 7198169 -235466184 + MIR SINE MIR 49 193 -69 252 100 0 0 chr1 7200144 7200184 -235464169 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 427 345 112 24 chr1 7200433 7200541 -235463812 - L2 LINE L2 0 3313 3216 1935 143 34 3 chr1 7200541 7200835 -235463518 - AluSx SINE Alu -9 303 1 427 345 112 24 chr1 7200835 7201192 -235463161 - L2 LINE L2 -97 3216 2807 406 269 0 21 chr1 7201229 7201405 -235462948 - MIR SINE MIR -19 243 7 285 319 70 75 chr1 7201408 7201863 -235462490 - L2 LINE L2 -540 2774 2322 24 53 0 0 chr1 7201909 7201947 -235462406 + AT_rich Low_complexity Low_complexity 1 38 0 2790 20 0 0 chr1 7203970 7204271 -235460082 + AluYb8 SINE Alu 1 301 -17 272 182 2 0 chr1 7204394 7204451 -235459902 - L1ME3 LINE L1 -196 5968 5911 1094 266 109 30 chr1 7204517 7205656 -235458697 - L1ME3 LINE L1 -356 5806 4577 490 237 51 0 chr1 7205874 7206030 -235458323 - L1M LINE L1 -737 5427 5264 24 0 0 0 chr1 7206320 7206344 -235458009 + AT_rich Low_complexity Low_complexity 1 24 0 231 36 0 0 chr1 7206537 7206565 -235457788 + (A)n Simple_repeat Simple_repeat 1 28 0 270 0 0 0 chr1 7206565 7206595 -235457758 + (TA)n Simple_repeat Simple_repeat 2 31 0 2046 72 0 27 chr1 7206595 7206858 -235457495 - AluY SINE Alu -5 306 51 216 67 0 0 chr1 7206865 7206895 -235457458 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2282 103 0 0 chr1 7208690 7209010 -235455343 - AluSg SINE Alu 0 320 1 341 230 0 0 chr1 7209815 7209889 -235454464 - MIR SINE MIR -113 149 76 671 173 168 39 chr1 7209891 7210070 -235454283 + MER105 DNA DNA 1 202 -2 215 316 43 51 chr1 7211219 7211336 -235453017 - L2 LINE L2 -16 3256 3141 2097 134 0 29 chr1 7211942 7212248 -235452105 + AluSg SINE Alu 1 297 -13 2237 141 32 3 chr1 7213819 7214195 -235450158 - MLT1B LTR MaLR 0 390 4 42 20 0 0 chr1 7215493 7215542 -235448811 + AT_rich Low_complexity Low_complexity 1 49 0 291 294 20 0 chr1 7216525 7216627 -235447726 + MIR SINE MIR 86 189 -73 25 65 0 0 chr1 7218208 7218254 -235446099 + AT_rich Low_complexity Low_complexity 1 46 0 324 0 0 0 chr1 7220045 7220081 -235444272 + (CA)n Simple_repeat Simple_repeat 2 37 0 1074 249 123 63 chr1 7222105 7222500 -235441853 - L1ME1 LINE L1 -25 6141 5668 2418 48 3 7 chr1 7222500 7222789 -235441564 + AluY SINE Alu 1 288 -23 1074 249 123 63 chr1 7222789 7222956 -235441397 - L1ME1 LINE L1 -498 5668 5513 270 81 0 0 chr1 7223039 7223076 -235441277 + (T)n Simple_repeat Simple_repeat 1 37 0 353 65 0 0 chr1 7223076 7223122 -235441231 - U5 snRNA snRNA -65 51 6 1331 209 16 35 chr1 7223354 7223670 -235440683 - AluJo SINE Alu 0 312 3 849 125 0 52 chr1 7223674 7223810 -235440543 - FLAM_C SINE Alu -3 130 2 2393 74 0 16 chr1 7224090 7224402 -235439951 - AluY SINE Alu -4 307 1 267 54 0 0 chr1 7225648 7225685 -235438668 + (T)n Simple_repeat Simple_repeat 1 37 0 333 264 0 112 chr1 7226245 7226370 -235437983 + L2 LINE L2 3191 3301 -12 1503 232 24 18 chr1 7230189 7230530 -235433823 + MER2 DNA MER2_type 1 343 -1 198 0 0 0 chr1 7232759 7232781 -235431572 + (GGAGAA)n Simple_repeat Simple_repeat 1 22 0 215 261 0 0 chr1 7234327 7234392 -235429961 + (CCA)n Simple_repeat Simple_repeat 1 65 0 505 295 116 62 chr1 7235347 7235812 -235428541 - L2 LINE L2 -2 3311 2822 203 61 30 0 chr1 7236558 7236591 -235427762 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 29 28 0 0 chr1 7237943 7237979 -235426374 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 7238154 7238184 -235426169 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 7241930 7241954 -235422399 + GC_rich Low_complexity Low_complexity 1 24 0 497 118 0 21 chr1 7242859 7242952 -235421401 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 286 314 124 13 chr1 7244767 7244920 -235419433 + MIR SINE MIR 33 202 -60 2442 73 0 0 chr1 7244987 7245290 -235419063 - AluY SINE Alu -8 303 1 258 287 130 13 chr1 7245745 7245925 -235418428 + MIR SINE MIR 18 216 -46 182 335 87 64 chr1 7247035 7247208 -235417145 + L2 LINE L2 2874 3050 -263 223 347 107 0 chr1 7247275 7247396 -235416957 + L2 LINE L2 3180 3313 0 534 235 0 0 chr1 7247404 7247574 -235416779 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 282 250 0 0 chr1 7247611 7247699 -235416654 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 508 182 214 73 chr1 7247794 7247986 -235416367 - MER20 DNA MER1_type 0 219 1 1506 126 4 17 chr1 7249343 7249573 -235414780 - AluJo SINE Alu 0 312 86 977 281 43 7 chr1 7249637 7249999 -235414354 + L1MB7 LINE L1 5796 6176 -2 2432 45 0 0 chr1 7250058 7250346 -235414007 - AluY SINE Alu -23 288 1 1843 126 11 0 chr1 7250368 7250631 -235413722 - AluSx SINE Alu -46 266 1 348 125 0 0 chr1 7250642 7250698 -235413655 + MER96B DNA MER1_type? 190 245 -172 2381 65 0 28 chr1 7250698 7251019 -235413334 - AluSx SINE Alu 0 312 1 2142 88 3 29 chr1 7251053 7251359 -235412994 - AluY SINE Alu -11 300 3 519 137 0 17 chr1 7251781 7251809 -235412544 - MER96B DNA MER1_type? -235 182 155 2349 84 0 7 chr1 7251809 7252119 -235412234 + AluSc SINE Alu 1 308 -1 519 137 0 17 chr1 7252119 7252207 -235412146 - MER96B DNA MER1_type? -262 155 68 297 164 33 0 chr1 7252410 7252471 -235411882 + MER45 DNA AcHobo 44 106 -72 233 175 0 0 chr1 7252465 7252505 -235411848 + MER45 DNA AcHobo 1542 1581 0 * 695 253 128 0 chr1 7253425 7253715 -235410638 + MER58B DNA MER1_type 6 341 0 2392 65 0 0 chr1 7254553 7254843 -235409510 + AluY SINE Alu 1 290 -21 2858 80 0 3 chr1 7254874 7255237 -235409116 + THE1B LTR MaLR 1 362 -2 577 316 54 24 chr1 7255490 7255825 -235408528 - L1ME4a LINE L1 -255 5866 5522 2280 100 0 0 chr1 7255842 7256142 -235408211 - AluSg SINE Alu -10 300 1 1597 130 8 8 chr1 7257534 7257807 -235406546 - AluJb SINE Alu 0 319 47 1926 151 3 0 chr1 7258537 7258835 -235405518 + AluJb SINE Alu 1 299 -13 880 117 0 0 chr1 7258835 7258955 -235405398 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7258973 7259048 -235405305 + A-rich Low_complexity Low_complexity 1 75 0 2382 77 3 0 chr1 7259461 7259760 -235404593 + AluSx SINE Alu 1 300 -12 2441 54 0 0 chr1 7260180 7260477 -235403876 + AluY SINE Alu 1 297 -14 1008 194 0 0 chr1 7260614 7260789 -235403564 - AluJ SINE Alu -13 299 125 146 72 0 0 chr1 7260789 7261114 -235403239 + AT_rich Low_complexity Low_complexity 1 47 0 842 143 0 0 chr1 7261121 7261240 -235403113 - AluJ SINE Alu -193 119 1 2327 97 0 0 chr1 7263467 7263777 -235400576 - AluSq SINE Alu -3 310 1 811 108 0 0 chr1 7264156 7264267 -235400086 - HY1 scRNA scRNA -1 111 1 2084 110 3 3 chr1 7264273 7264585 -235399768 - AluSx SINE Alu 0 312 1 705 223 22 0 chr1 7264668 7264807 -235399546 - FLAM_C SINE Alu -1 142 1 2677 246 44 28 chr1 7265109 7265330 -235399023 - MER82 DNA MER2_type 0 653 437 2219 87 0 3 chr1 7265330 7265637 -235398716 - AluSp SINE Alu 0 306 1 2677 246 44 28 chr1 7265637 7266055 -235398298 - MER82 DNA MER2_type -216 437 3 2343 80 0 0 chr1 7268822 7269123 -235395230 - AluSg SINE Alu -9 301 1 1461 85 0 0 chr1 7269895 7270153 -235394200 + (TCCA)n Simple_repeat Simple_repeat 1 258 0 546 96 0 0 chr1 7270254 7270327 -235394026 - AluJ/FLAM SINE Alu -239 73 1 802 188 0 0 chr1 7270711 7270844 -235393509 - FLAM_C SINE Alu 0 133 1 1022 137 12 6 chr1 7270894 7271055 -235393298 + U1 snRNA snRNA 4 165 0 1637 114 84 4 chr1 7271094 7271367 -235392986 + AluSg SINE Alu 1 295 -15 1823 129 3 30 chr1 7271714 7272016 -235392337 + AluSx SINE Alu 1 294 -18 2279 99 0 0 chr1 7272018 7272320 -235392033 + AluY SINE Alu 3 304 -7 242 297 44 33 chr1 7273041 7273132 -235391221 - MIR3 SINE MIR -3 205 114 2309 109 6 6 chr1 7273179 7273491 -235390862 + AluSx SINE Alu 1 312 0 940 208 50 46 chr1 7274369 7274609 -235389744 + MIR SINE MIR 19 259 -3 397 288 110 0 chr1 7274686 7274804 -235389549 - L3 LINE CR1 -133 1444 1314 1764 183 0 7 chr1 7276198 7276498 -235387855 + AluJb SINE Alu 1 298 -14 2341 103 3 3 chr1 7277548 7277858 -235386495 - AluSq SINE Alu -3 310 1 252 279 165 0 chr1 7277871 7277950 -235386403 + MIR SINE MIR 57 148 -114 2333 70 0 17 chr1 7278236 7278523 -235385830 + AluY SINE Alu 22 303 -8 269 222 0 0 chr1 7278700 7278745 -235385608 - L2 LINE L2 -24 3289 3245 208 75 25 25 chr1 7278753 7278793 -235385560 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2081 135 3 3 chr1 7278826 7279122 -235385231 - AluSx SINE Alu -16 296 1 543 202 90 106 chr1 7279122 7279310 -235385043 - MIR SINE MIR -16 246 62 292 299 19 9 chr1 7279643 7279750 -235384603 + L1MC4 LINE L1 7707 7814 -228 1510 156 89 7 chr1 7279750 7280032 -235384321 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7280035 7280078 -235384275 + AT_rich Low_complexity Low_complexity 1 43 0 293 256 93 0 chr1 7280108 7280194 -235384159 + L1MC4 LINE L1 7806 7899 -143 1090 167 6 0 chr1 7280252 7280426 -235383927 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7280436 7280508 -235383845 + CT-rich Low_complexity Low_complexity 1 75 -11 1796 166 10 7 chr1 7280508 7280809 -235383544 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7280809 7280822 -235383531 + CT-rich Low_complexity Low_complexity 74 86 0 302 229 0 16 chr1 7280828 7280889 -235383464 + L2 LINE L2 3254 3313 0 190 321 0 25 chr1 7280954 7281035 -235383318 + L2 LINE L2 2174 2252 -1062 2302 113 0 3 chr1 7281409 7281720 -235382633 - AluSg SINE Alu 0 310 1 231 36 0 0 chr1 7281720 7281748 -235382605 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2022 108 48 0 chr1 7281748 7282017 -235382336 - AluSx SINE Alu -30 282 1 991 101 8 0 chr1 7282020 7282149 -235382204 - AluSq/x SINE Alu -179 134 5 321 260 67 39 chr1 7283199 7283303 -235381050 - L3b LINE CR1 -190 1393 1287 2157 115 3 14 chr1 7283696 7284027 -235380326 - AluSx SINE Alu 0 312 3 21 0 0 0 chr1 7284034 7284055 -235380298 + AT_rich Low_complexity Low_complexity 1 21 0 2034 103 29 7 chr1 7284264 7284545 -235379808 - AluSx SINE Alu -14 298 12 2326 66 20 7 chr1 7284940 7285241 -235379112 - AluSq SINE Alu -8 305 1 2072 116 176 19 chr1 7285311 7285350 -235379003 - MSTA LTR MaLR 0 428 396 2197 126 10 0 chr1 7285350 7285659 -235378694 + AluSx SINE Alu 1 312 0 2072 116 176 19 chr1 7285659 7285989 -235378364 - MSTA LTR MaLR -32 396 1 225 0 0 0 chr1 7286281 7286306 -235378047 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 710 187 0 0 chr1 7286309 7286416 -235377937 - AluJb SINE Alu -31 281 175 1840 131 28 21 chr1 7286455 7286775 -235377578 + AluJb SINE Alu 1 312 0 2140 98 7 17 chr1 7286785 7287095 -235377258 - AluSx SINE Alu 0 308 2 203 316 63 0 chr1 7287843 7287922 -235376431 + L2 LINE L2 3189 3272 0 1799 81 27 0 chr1 7287979 7288201 -235376152 - AluSx SINE Alu -84 228 1 872 124 0 0 chr1 7288330 7288443 -235375910 + AluSx SINE Alu 62 174 -138 1817 97 4 4 chr1 7288444 7288681 -235375672 - AluSc SINE Alu -72 237 1 788 193 60 0 chr1 7288690 7288856 -235375497 - MLT1C LTR MaLR -291 176 1 210 336 138 52 chr1 7288857 7289089 -235375264 + L2 LINE L2 3002 3253 -19 234 0 0 0 chr1 7289093 7289119 -235375234 + (CA)n Simple_repeat Simple_repeat 2 27 0 805 188 0 0 chr1 7289119 7289247 -235375106 - FLAM_C SINE Alu -5 128 1 2125 129 7 10 chr1 7289292 7289601 -235374752 + AluSx SINE Alu 3 310 -2 2179 112 7 0 chr1 7289805 7290091 -235374262 + AluSx SINE Alu 1 288 -24 297 0 0 0 chr1 7290103 7290136 -235374217 + (TG)n Simple_repeat Simple_repeat 2 34 0 418 370 24 6 chr1 7290269 7290434 -235373919 - MIR3 SINE MIR -9 199 32 270 246 0 0 chr1 7290543 7290608 -235373745 + MIR SINE MIR 34 98 -164 2323 104 0 0 chr1 7290696 7290995 -235373358 + AluSx SINE Alu 1 299 -13 297 75 0 0 chr1 7291122 7291162 -235373191 + (TG)n Simple_repeat Simple_repeat 2 41 0 1002 126 119 0 chr1 7291442 7291593 -235372760 + AluJb SINE Alu 137 305 -7 248 109 0 22 chr1 7291596 7291642 -235372711 + (GAA)n Simple_repeat Simple_repeat 1 45 0 2075 130 27 10 chr1 7291699 7292000 -235372353 - AluSq SINE Alu -7 306 1 2480 71 3 7 chr1 7292107 7292416 -235371937 - AluY SINE Alu 0 311 4 2351 83 3 7 chr1 7292452 7292754 -235371599 + AluY SINE Alu 1 301 -10 1618 184 3 44 chr1 7292770 7293065 -235371288 + AluJo SINE Alu 10 293 -19 444 37 0 0 chr1 7293065 7293119 -235371234 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 1618 184 3 44 chr1 7293119 7293139 -235371214 + AluJo SINE Alu 293 312 0 349 245 47 19 chr1 7293186 7293292 -235371061 - L2 LINE L2 0 3313 3205 609 67 0 0 chr1 7293472 7293547 -235370806 + AluS SINE Alu 2 76 -237 2418 74 0 3 chr1 7293547 7293831 -235370522 + AluSq SINE Alu 15 297 -16 266 75 0 0 chr1 7293886 7293926 -235370427 + HY1 scRNA scRNA 72 111 -1 699 196 0 8 chr1 7294234 7294367 -235369986 + FLAM_C SINE Alu 2 133 -10 223 169 0 34 chr1 7294367 7294426 -235369927 + GA-rich Low_complexity Low_complexity 4 60 0 1994 127 7 13 chr1 7295612 7295919 -235368434 - AluJb SINE Alu -7 305 1 2552 58 0 0 chr1 7296076 7296371 -235367982 + AluY SINE Alu 1 295 -16 188 289 26 26 chr1 7296415 7296491 -235367862 + L2 LINE L2 2422 2497 -817 610 315 88 28 chr1 7296491 7297060 -235367293 + L2 LINE L2 2221 2823 -491 538 280 70 23 chr1 7297094 7297308 -235367045 + L2 LINE L2 3090 3313 0 2160 103 34 0 chr1 7297379 7297670 -235366683 + AluSg SINE Alu 1 301 -9 335 327 94 65 chr1 7297805 7298239 -235366114 + L2 LINE L2 2812 3258 -14 829 217 0 6 chr1 7298468 7298629 -235365724 + FRAM SINE Alu 1 160 -6 2146 91 30 27 chr1 7298682 7299095 -235365258 + AluSp SINE Alu 1 414 0 284 250 115 77 chr1 7299095 7299168 -235365185 + L1 LINE L1 4600 4669 -1477 2489 49 0 0 chr1 7299168 7299456 -235364897 + AluY SINE Alu 1 288 -23 180 0 0 0 chr1 7299456 7299476 -235364877 + (TA)n Simple_repeat Simple_repeat 2 21 0 284 250 115 77 chr1 7299476 7299557 -235364796 + L1 LINE L1 4668 4761 -1385 2427 89 0 16 chr1 7299557 7299873 -235364480 + AluSq SINE Alu 1 311 -2 411 217 3 44 chr1 7299922 7300072 -235364281 + L1ME4a LINE L1 5201 5339 -807 1829 113 19 12 chr1 7300073 7300329 -235364024 + AluSp SINE Alu 39 296 -17 2361 139 86 8 chr1 7300334 7300729 -235363624 + MSTB LTR MaLR 1 426 0 435 219 34 25 chr1 7300743 7300862 -235363491 - MIR SINE MIR -28 234 115 772 237 21 5 chr1 7300867 7301061 -235363292 + MER58A DNA MER1_type 1 197 -27 453 184 13 133 chr1 7301064 7301135 -235363218 - MER45A DNA AcHobo -1407 174 131 2028 116 56 0 chr1 7301135 7301419 -235362934 + AluSx SINE Alu 1 300 -12 453 184 13 133 chr1 7301419 7301505 -235362848 - MER45A DNA AcHobo -1450 131 36 221 330 42 4 chr1 7301578 7301676 -235362677 - MIR SINE MIR -94 114 13 282 349 8 0 chr1 7301694 7301820 -235362533 + L1ME4a LINE L1 5486 5612 -509 353 258 118 45 chr1 7301829 7302050 -235362303 + L1ME4a LINE L1 5827 6063 -58 1749 159 25 11 chr1 7302266 7302549 -235361804 + AluJb SINE Alu 10 296 -16 368 264 203 11 chr1 7302627 7302809 -235361544 + MER115 DNA AcHobo 23 239 -454 3227 125 97 22 chr1 7302991 7303568 -235360785 - LTR29 LTR ERV1 0 622 3 243 213 85 43 chr1 7303585 7303679 -235360674 + Zaphod DNA AcHobo 3915 4012 -19 2244 109 3 34 chr1 7303813 7304134 -235360219 - AluSx SINE Alu -1 311 1 1602 157 4 15 chr1 7304134 7304395 -235359958 - AluJo SINE Alu -16 296 39 2286 110 3 19 chr1 7304569 7304886 -235359467 + AluSx SINE Alu 1 312 0 1739 175 23 16 chr1 7304973 7305276 -235359077 - AluJb SINE Alu -7 305 1 2178 119 3 3 chr1 7305685 7305987 -235358366 - AluSx SINE Alu -10 302 1 2116 108 0 63 chr1 7306193 7306526 -235357827 + AluSx SINE Alu 1 312 0 2132 177 16 26 chr1 7306730 7307081 -235357272 - L1MB7 LINE L1 -9 6175 5827 2287 114 3 0 chr1 7307081 7307389 -235356964 - AluSx SINE Alu -3 309 1 2132 177 16 26 chr1 7307389 7307467 -235356886 - L1MB7 LINE L1 -357 5827 5750 2256 103 17 7 chr1 7307527 7307829 -235356524 - AluSg SINE Alu -5 305 1 2130 99 23 26 chr1 7307830 7308132 -235356221 - AluSx SINE Alu -11 301 1 2250 121 7 0 chr1 7308284 7308589 -235355764 - AluSp SINE Alu -6 307 1 548 288 142 14 chr1 7308647 7308812 -235355541 - L1ME3 LINE L1 -218 5944 5801 1070 214 28 0 chr1 7308812 7309027 -235355326 - MER58A DNA MER1_type 0 224 4 548 288 142 14 chr1 7309027 7309406 -235354947 - L1ME3 LINE L1 -361 5801 5323 2024 121 0 17 chr1 7309406 7309695 -235354658 - AluSx SINE Alu -4 308 25 1646 54 0 0 chr1 7309695 7309879 -235354474 - AluY SINE Alu -126 185 1 420 149 0 64 chr1 7309905 7309999 -235354354 + AluJ/FRAM SINE Alu 218 305 -7 24 0 0 0 chr1 7309999 7310023 -235354330 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 7310036 7310074 -235354279 + AT_rich Low_complexity Low_complexity 1 38 0 216 0 0 0 chr1 7310335 7310359 -235353994 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 311 256 33 0 chr1 7310387 7310477 -235353876 - L1ME LINE L1 -297 5824 5732 2229 112 0 7 chr1 7310522 7310827 -235353526 - AluSg SINE Alu -7 303 1 1071 68 8 0 chr1 7310834 7310966 -235353387 - AluSq/x SINE Alu -179 133 1 2604 65 3 0 chr1 7311662 7311971 -235352382 + AluY SINE Alu 1 310 -1 2651 64 0 0 chr1 7311974 7312285 -235352068 + AluY SINE Alu 1 311 0 2097 139 0 10 chr1 7312297 7312606 -235351747 + AluSx SINE Alu 1 306 -6 323 197 15 0 chr1 7312662 7312728 -235351625 - AluJ/FLAM SINE Alu -228 74 8 2071 106 7 0 chr1 7312777 7313060 -235351293 + AluY SINE Alu 18 302 -9 383 158 267 10 chr1 7313288 7313389 -235350964 + FLAM_C SINE Alu 5 131 -2 572 163 0 0 chr1 7313615 7313701 -235350652 + AluS SINE Alu 7 92 -221 1683 124 116 0 chr1 7313721 7313979 -235350374 + AluSx SINE Alu 21 308 -4 969 129 0 0 chr1 7315143 7315282 -235349071 + AluJb SINE Alu 1 139 -173 2135 112 0 7 chr1 7315496 7315782 -235348571 - AluSq SINE Alu -29 284 1 1802 155 3 14 chr1 7316033 7316330 -235348023 + AluJo SINE Alu 5 298 -14 1401 201 123 4 chr1 7316333 7316602 -235347751 + AluJo SINE Alu 1 301 -1 331 111 0 0 chr1 7316602 7316647 -235347706 + (GA)n Simple_repeat Simple_repeat 1 45 0 584 171 0 8 chr1 7316650 7316767 -235347586 + GA-rich Low_complexity Low_complexity 1 116 0 387 367 137 5 chr1 7316781 7317198 -235347155 + L2 LINE L2 2173 2644 -670 2284 100 0 0 chr1 7317206 7317522 -235346831 - AluSx SINE Alu 0 317 2 445 284 42 64 chr1 7317614 7317850 -235346503 + L2 LINE L2 3078 3308 -5 1886 124 11 11 chr1 7318356 7318630 -235345723 + AluSq SINE Alu 2 275 -38 778 125 191 0 chr1 7318631 7318767 -235345586 + AluSp SINE Alu 137 298 -15 2509 76 3 0 chr1 7318908 7319211 -235345142 + AluSp SINE Alu 2 305 -8 405 58 0 0 chr1 7319211 7319263 -235345090 + (TA)n Simple_repeat Simple_repeat 2 53 0 316 143 29 0 chr1 7319304 7319374 -235344979 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 293 86 0 0 chr1 7319376 7319434 -235344919 + LTR66 LTR ERVL 394 451 -159 2295 84 3 0 chr1 7319653 7319972 -235344381 + AluSp SINE Alu 1 320 0 868 121 35 7 chr1 7319993 7320134 -235344219 + L1MA5 LINE L1 6154 6298 -2 326 298 23 46 chr1 7320185 7320316 -235344037 + MIR SINE MIR 134 261 -1 254 146 0 18 chr1 7320656 7320711 -235343642 + (TCC)n Simple_repeat Simple_repeat 3 56 0 253 299 11 11 chr1 7321081 7321168 -235343185 - LTR67 LTR ERVL -3 554 468 343 228 40 101 chr1 7321242 7321354 -235342999 + L1MD2 LINE L1 6210 6312 -47 2267 111 3 0 chr1 7321354 7321660 -235342693 - AluSx SINE Alu -5 307 1 343 228 40 101 chr1 7321660 7321696 -235342657 + L1MD2 LINE L1 6312 6349 -10 2145 106 6 38 chr1 7322026 7322346 -235342007 + AluSg SINE Alu 1 310 0 2389 88 10 0 chr1 7322956 7323250 -235341103 - AluSp SINE Alu -16 297 1 2376 91 27 0 chr1 7323554 7323851 -235340502 - AluSq SINE Alu -3 310 6 816 85 24 30 chr1 7323857 7324021 -235340332 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 468 0 0 0 chr1 7324019 7324071 -235340282 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 * 1979 113 0 18 chr1 7324071 7324423 -235339930 - AluSx SINE Alu 0 359 13 230 283 0 0 chr1 7324436 7324489 -235339864 + L2 LINE L2 2688 2740 -574 526 319 86 46 chr1 7324497 7324951 -235339402 + L2 LINE L2 2842 3313 0 2493 108 8 3 chr1 7325011 7325373 -235338980 - THE1B LTR MaLR 0 364 1 428 175 39 38 chr1 7326321 7326436 -235337917 + MER34 LTR ERV1 431 536 -6 235 40 0 140 chr1 7326444 7326494 -235337859 + MLT1D LTR MaLR 245 287 -218 2297 94 0 10 chr1 7326521 7326809 -235337544 - AluSq SINE Alu -28 285 1 857 77 0 31 chr1 7326906 7327036 -235337317 + MER30 DNA MER1_type 1 126 -104 2272 76 4 0 chr1 7327039 7327346 -235337007 - AluSx SINE Alu 0 312 5 410 198 47 38 chr1 7327369 7327475 -235336878 + L2 LINE L2 3166 3272 0 1994 123 45 3 chr1 7328106 7328398 -235335955 - AluSg SINE Alu -6 304 1 985 246 38 102 chr1 7328583 7328685 -235335668 - MER34 LTR ERV1 0 542 435 2205 135 0 3 chr1 7328685 7328989 -235335364 - AluSx SINE Alu -9 303 1 985 246 38 102 chr1 7328989 7329438 -235334915 - MER34 LTR ERV1 -107 435 27 2250 98 3 35 chr1 7329438 7329755 -235334598 - AluSx SINE Alu -5 307 1 985 246 38 102 chr1 7329755 7329779 -235334574 - MER34 LTR ERV1 -515 27 3 1762 100 10 46 chr1 7329806 7330213 -235334140 - MER1B DNA MER1_type 0 339 1 2293 108 3 25 chr1 7330555 7330870 -235333483 + AluSp SINE Alu 1 308 -5 2170 117 3 0 chr1 7330889 7331179 -235333174 + AluSx SINE Alu 5 295 -17 1575 155 68 0 chr1 7331551 7331850 -235332503 + AluJo SINE Alu 1 317 0 2307 128 0 0 chr1 7332171 7332476 -235331877 - AluJo SINE Alu -7 305 1 1957 127 37 10 chr1 7332820 7333155 -235331198 - AluSx SINE Alu 0 343 1 26 0 0 0 chr1 7333476 7333502 -235330851 + AT_rich Low_complexity Low_complexity 1 26 0 307 299 26 0 chr1 7333510 7333587 -235330766 - L1MC4 LINE L1 -1350 6692 6614 857 137 0 0 chr1 7333615 7333732 -235330621 - FLAM_C SINE Alu -26 117 1 210 91 0 0 chr1 7333760 7333793 -235330560 + (TG)n Simple_repeat Simple_repeat 2 34 0 1010 179 6 0 chr1 7333838 7334000 -235330353 + AluJb SINE Alu 136 298 -14 428 231 27 34 chr1 7334705 7334852 -235329501 + AluYa5 SINE Alu 164 309 -2 555 174 93 41 chr1 7334853 7335025 -235329328 - MER96B DNA MER1_type? -236 181 1 869 189 13 0 chr1 7335054 7335207 -235329146 - AluJb SINE Alu -21 291 137 24 96 0 0 chr1 7335635 7335708 -235328645 + GC_rich Low_complexity Low_complexity 1 73 0 826 124 0 0 chr1 7336221 7336334 -235328019 + AluJb SINE Alu 196 308 -4 2137 105 54 0 chr1 7336342 7336636 -235327717 + AluSg SINE Alu 1 310 0 737 254 21 25 chr1 7336772 7337008 -235327345 - L1MC4 LINE L1 0 8042 7808 204 68 0 102 chr1 7337101 7337160 -235327193 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 34 0 0 0 chr1 7337819 7337853 -235326500 + AT_rich Low_complexity Low_complexity 1 34 0 449 95 60 0 chr1 7337853 7337937 -235326416 - L1PB1 LINE L1 0 6151 6063 256 260 8 98 chr1 7338081 7338215 -235326138 - MER5A DNA MER1_type 0 189 54 307 222 40 95 chr1 7338408 7338534 -235325819 - L1ME LINE L1 -466 5655 5537 2316 92 0 0 chr1 7338627 7338939 -235325414 + AluSx SINE Alu 1 312 0 509 325 124 0 chr1 7339022 7339216 -235325137 + MIR SINE MIR 26 243 -19 405 300 19 25 chr1 7339572 7339732 -235324621 + MIR SINE MIR 34 192 -70 207 344 78 19 chr1 7339831 7339985 -235324368 + L2 LINE L2 2578 2740 -574 1101 73 0 7 chr1 7341367 7341504 -235322849 - AluSp/q SINE Alu -15 298 163 331 316 18 18 chr1 7341840 7341954 -235322399 + MIR SINE MIR 109 222 -40 2096 113 10 3 chr1 7341966 7342257 -235322096 - AluSg SINE Alu -17 293 1 1844 171 3 22 chr1 7342663 7342978 -235321375 + AluJb SINE Alu 1 309 -3 211 205 0 0 chr1 7343128 7343167 -235321186 + CT-rich Low_complexity Low_complexity 3 41 0 729 176 0 29 chr1 7343167 7343303 -235321050 - AluJb SINE Alu -179 133 2 532 238 6 70 chr1 7343385 7343486 -235320867 + MER45 DNA AcHobo 4 91 -862 2241 96 7 0 chr1 7343486 7343777 -235320576 - AluSx SINE Alu -19 293 1 532 238 6 70 chr1 7343777 7343847 -235320506 + MER45 DNA AcHobo 91 164 -789 450 248 255 0 chr1 7343968 7344121 -235320232 + MER45C DNA AcHobo 762 953 0 202 354 31 42 chr1 7344337 7344433 -235319920 + MIR3 SINE MIR 106 200 -8 1918 160 10 0 chr1 7344556 7344850 -235319503 + AluJo SINE Alu 1 297 -15 2518 93 0 0 chr1 7345130 7345443 -235318910 + AluSq SINE Alu 1 313 0 2142 130 0 3 chr1 7345579 7345871 -235318482 - AluSx SINE Alu -21 291 1 742 188 0 0 chr1 7346255 7346388 -235317965 - FLAM_C SINE Alu 0 133 1 935 137 12 6 chr1 7346438 7346599 -235317754 + U1 snRNA snRNA 4 165 0 1728 114 84 4 chr1 7346638 7346911 -235317442 + AluSg SINE Alu 1 295 -15 1913 129 3 30 chr1 7347258 7347560 -235316793 + AluSx SINE Alu 1 294 -18 2388 99 0 0 chr1 7347562 7347864 -235316489 + AluY SINE Alu 3 304 -7 225 319 44 33 chr1 7348585 7348676 -235315677 - MIR3 SINE MIR -3 205 114 2320 109 6 6 chr1 7348723 7349035 -235315318 + AluSx SINE Alu 1 312 0 884 208 50 46 chr1 7349913 7350153 -235314200 + MIR SINE MIR 19 259 -3 378 288 110 0 chr1 7350230 7350348 -235314005 - L3 LINE CR1 -133 1444 1314 1775 183 0 7 chr1 7351742 7352042 -235312311 + AluJb SINE Alu 1 298 -14 2353 103 3 3 chr1 7353092 7353402 -235310951 - AluSq SINE Alu -3 310 1 233 279 165 0 chr1 7353415 7353494 -235310859 + MIR SINE MIR 57 148 -114 2340 70 0 17 chr1 7353781 7354068 -235310285 + AluY SINE Alu 22 303 -8 255 245 0 0 chr1 7354241 7354290 -235310063 - L2 LINE L2 -20 3293 3245 208 75 25 25 chr1 7354298 7354338 -235310015 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2089 135 3 3 chr1 7354371 7354667 -235309686 - AluSx SINE Alu -16 296 1 511 223 85 101 chr1 7354667 7354855 -235309498 - MIR SINE MIR -16 246 62 300 306 25 13 chr1 7355150 7355295 -235309058 + L1MC4 LINE L1 7573 7814 -95 1517 156 89 7 chr1 7355295 7355577 -235308776 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7355580 7355623 -235308730 + AT_rich Low_complexity Low_complexity 1 43 0 302 256 93 0 chr1 7355653 7355739 -235308614 + L1MC4 LINE L1 7806 7899 -143 1096 167 6 0 chr1 7355797 7355971 -235308382 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7355981 7356053 -235308300 + CT-rich Low_complexity Low_complexity 1 75 -11 1806 166 10 7 chr1 7356053 7356354 -235307999 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7356354 7356367 -235307986 + CT-rich Low_complexity Low_complexity 74 86 0 286 229 0 16 chr1 7356373 7356434 -235307919 + L2 LINE L2 3254 3313 0 181 321 0 25 chr1 7356499 7356580 -235307773 + L2 LINE L2 2174 2252 -1062 2304 113 0 3 chr1 7356936 7357265 -235307088 - AluSg SINE Alu 0 328 1 1966 129 50 4 chr1 7357283 7357563 -235306790 - AluSq SINE Alu -20 293 1 695 183 0 0 chr1 7358261 7358376 -235305977 + AluJo SINE Alu 1 115 -187 2759 72 3 8 chr1 7358376 7358748 -235305605 - THE1C LTR MaLR -4 371 1 1057 174 10 20 chr1 7358748 7358944 -235305409 + AluJo SINE Alu 106 299 -13 856 202 39 6 chr1 7359048 7359226 -235305127 - MIR SINE MIR -60 202 19 1242 185 14 14 chr1 7359556 7359778 -235304575 + AluJb SINE Alu 81 302 -10 1678 172 0 47 chr1 7360216 7360535 -235303818 + AluJb SINE Alu 1 304 -8 1550 121 3 121 chr1 7360694 7360874 -235303479 - AluSc SINE Alu -17 292 167 243 0 0 0 chr1 7360874 7360901 -235303452 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1550 121 3 121 chr1 7360901 7361051 -235303302 - AluSc SINE Alu -142 167 1 281 122 20 0 chr1 7361053 7361102 -235303251 - AluSq/x SINE Alu -170 132 83 318 333 140 0 chr1 7361277 7361427 -235302926 - MIR SINE MIR -18 244 74 2109 138 0 28 chr1 7361514 7361833 -235302520 + AluSx SINE Alu 3 312 0 511 238 72 86 chr1 7361841 7362250 -235302103 + L1M4 LINE L1 3896 4309 -1837 1930 157 10 16 chr1 7362250 7362563 -235301790 - AluJb SINE Alu -1 311 1 511 238 72 86 chr1 7362563 7362597 -235301756 + L1M4 LINE L1 4309 4342 -1804 2138 136 0 3 chr1 7362597 7362907 -235301446 + AluSx SINE Alu 1 309 -3 511 238 72 86 chr1 7362907 7363094 -235301259 + L1M4 LINE L1 4342 4610 -1536 496 95 0 0 chr1 7363132 7363206 -235301147 + AluSp/q SINE Alu 231 304 -9 284 188 24 35 chr1 7363208 7363293 -235301060 + L1M4 LINE L1 4638 4721 -1425 346 295 33 0 chr1 7363302 7363424 -235300929 - L1MC/D LINE L1 -2053 5755 5630 330 283 65 7 chr1 7363415 7363553 -235300800 - L1MC/D LINE L1 -2401 5407 5262 * 480 127 0 0 chr1 7363556 7363635 -235300718 - MER116 DNA Mariner -1 79 1 2111 135 3 13 chr1 7363667 7363978 -235300375 - AluSx SINE Alu -4 308 1 837 316 107 57 chr1 7363978 7364169 -235300184 - L1MC/D LINE L1 -981 5165 4985 2348 101 0 0 chr1 7364169 7364465 -235299888 + AluSc SINE Alu 3 298 -11 837 316 107 57 chr1 7364465 7364654 -235299699 - L1MC/D LINE L1 -1161 4985 4807 1901 164 3 7 chr1 7364654 7364958 -235299395 - AluJb SINE Alu -9 303 1 837 316 107 57 chr1 7364958 7365156 -235299197 - L1MC/D LINE L1 -1339 4807 4557 288 258 58 41 chr1 7365160 7365455 -235298898 - L1MC/D LINE L1 -2695 3451 3152 609 271 77 45 chr1 7365462 7365579 -235298774 - L1MC/D LINE L1 -3083 3063 2951 2416 113 0 0 chr1 7365579 7365888 -235298465 - AluSg SINE Alu -1 309 1 609 271 77 45 chr1 7365888 7366017 -235298336 - L1MC/D LINE L1 -3195 2951 2809 307 248 68 38 chr1 7366017 7366160 -235298193 - MIR SINE MIR -65 143 3 21 0 0 0 chr1 7366260 7366281 -235298072 + AT_rich Low_complexity Low_complexity 1 21 0 2431 94 0 0 chr1 7366742 7367040 -235297313 + AluSx SINE Alu 1 298 -14 214 266 55 37 chr1 7368805 7368914 -235295439 + L2 LINE L2 1301 1411 -1903 332 292 148 52 chr1 7369155 7369580 -235294773 + MLT1J LTR MaLR 1 466 -45 2894 137 20 29 chr1 7369626 7369711 -235294642 + L1MA8 LINE L1 5539 5623 -677 2192 91 51 46 chr1 7369711 7370084 -235294269 - THE1C LTR MaLR 0 375 1 2894 137 20 29 chr1 7370084 7370497 -235293856 + L1MA8 LINE L1 5623 6002 -298 622 206 8 8 chr1 7370497 7370628 -235293725 + FLAM_A SINE Alu 2 132 -1 2894 137 20 29 chr1 7370628 7370735 -235293618 + L1MA8 LINE L1 6002 6108 -192 1097 176 16 27 chr1 7370761 7370815 -235293538 - AluSx SINE Alu -126 186 133 2221 98 3 33 chr1 7370815 7371122 -235293231 - AluSg1 SINE Alu -11 298 1 1097 176 16 27 chr1 7371122 7371255 -235293098 - AluSx SINE Alu -179 133 1 1754 126 0 41 chr1 7371288 7371609 -235292744 + AluSx SINE Alu 1 309 0 428 100 0 0 chr1 7371609 7371669 -235292684 + Alu SINE Alu 231 290 -21 1362 134 0 5 chr1 7371686 7371896 -235292457 - AluSg/x SINE Alu 0 308 100 279 211 26 0 chr1 7371998 7372074 -235292279 + (CAAT)n Simple_repeat Simple_repeat 1 78 0 305 263 7 0 chr1 7372082 7372219 -235292134 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 1011 152 0 0 chr1 7372244 7372422 -235291931 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 374 260 0 17 chr1 7372441 7372618 -235291735 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 210 318 0 0 chr1 7372619 7372682 -235291671 + (CCCA)n Simple_repeat Simple_repeat 4 66 0 378 0 0 0 chr1 7373571 7373613 -235290740 + (TG)n Simple_repeat Simple_repeat 2 43 0 273 118 0 0 chr1 7373613 7373664 -235290689 + (GA)n Simple_repeat Simple_repeat 2 52 0 1845 132 18 14 chr1 7373665 7373945 -235290408 - AluJb SINE Alu -31 281 1 2280 80 0 7 chr1 7374288 7374596 -235289757 + AluSx SINE Alu 1 306 0 2432 87 3 0 chr1 7375007 7375307 -235289046 - AluSx SINE Alu -11 301 1 22 35 0 0 chr1 7376041 7376070 -235288283 + GC_rich Low_complexity Low_complexity 1 29 0 253 51 0 0 chr1 7376427 7376466 -235287887 + ORSL DNA AcHobo 171 209 -66 283 264 173 9 chr1 7376581 7376691 -235287662 - L2 LINE L2 -34 3279 3152 745 85 94 0 chr1 7376722 7376828 -235287525 - FLAM_C SINE Alu -16 117 2 373 300 50 70 chr1 7376834 7377022 -235287331 - L2 LINE L2 -114 3199 3020 2146 110 14 3 chr1 7377022 7377314 -235287039 + AluSx SINE Alu 1 295 -17 373 300 50 70 chr1 7377314 7377468 -235286885 - L2 LINE L2 -293 3020 2864 241 256 141 16 chr1 7378459 7378580 -235285773 - MLT1J2 LTR MaLR -46 404 269 1719 167 30 17 chr1 7380502 7380801 -235283552 + AluJb SINE Alu 1 303 -9 219 304 0 0 chr1 7380913 7381038 -235283315 + (CA)n Simple_repeat Simple_repeat 1 125 0 464 172 21 0 chr1 7381697 7381790 -235282563 - MER53 DNA DNA -2 187 93 250 230 96 96 chr1 7382204 7382413 -235281940 - L1ME3A LINE L1 0 6170 5962 355 233 273 7 chr1 7382447 7382597 -235281756 - LTR16C LTR ERVL 0 491 302 1674 164 7 20 chr1 7382600 7382905 -235281448 - MLT1A1 LTR MaLR -64 301 1 239 267 133 0 chr1 7382913 7383003 -235281350 - LTR16C LTR ERVL -230 261 160 949 170 29 164 chr1 7383024 7383244 -235281109 - MLT1B LTR MaLR 0 390 201 280 143 0 0 chr1 7383265 7383314 -235281039 - Alu SINE Alu 0 300 252 1655 239 73 41 chr1 7383470 7383895 -235280458 - L1ME3A LINE L1 -239 5931 5476 2081 123 19 23 chr1 7383895 7384205 -235280148 - AluSq SINE Alu -4 309 1 1655 239 73 41 chr1 7384205 7384436 -235279917 - L1ME3A LINE L1 -694 5476 5254 180 0 0 0 chr1 7384450 7384470 -235279883 + (T)n Simple_repeat Simple_repeat 1 20 0 330 259 95 7 chr1 7384507 7384654 -235279699 + L1M4 LINE L1 5006 5165 -981 1986 153 0 7 chr1 7384661 7384955 -235279398 + AluJb SINE Alu 1 292 -20 273 263 61 18 chr1 7384974 7385088 -235279265 - L1ME3A LINE L1 -1568 4578 4460 1438 85 0 20 chr1 7385102 7385301 -235279052 + AluSg/x SINE Alu 115 309 -1 703 268 89 59 chr1 7385303 7385662 -235278691 - L1ME3A LINE L1 -2338 3808 3439 405 58 0 0 chr1 7385662 7385714 -235278639 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 1072 163 218 28 chr1 7385714 7385966 -235278387 - AluSg SINE Alu 0 300 1 1603 105 168 88 chr1 7386102 7386316 -235278037 + MLT1B LTR MaLR 5 201 -189 1998 151 131 13 chr1 7386316 7386699 -235277654 + MSTA LTR MaLR 1 428 0 1603 105 168 88 chr1 7386699 7386757 -235277596 + MLT1B LTR MaLR 201 253 -137 688 151 109 0 chr1 7386757 7386876 -235277477 + FLAM_C SINE Alu 1 132 -1 1603 105 168 88 chr1 7386876 7386954 -235277399 + MLT1B LTR MaLR 253 384 -6 568 206 39 116 chr1 7386994 7387063 -235277290 - L1M4 LINE L1 -2877 3269 3196 2334 125 0 0 chr1 7387063 7387374 -235276979 + AluSx SINE Alu 1 311 -1 568 206 39 116 chr1 7387374 7387558 -235276795 - L1M4 LINE L1 -2950 3196 2999 2144 144 0 3 chr1 7387558 7387871 -235276482 - AluJb SINE Alu 0 312 1 568 206 39 116 chr1 7387871 7387894 -235276459 - L1M4 LINE L1 -3147 2999 2976 2234 126 7 0 chr1 7387894 7388204 -235276149 - AluSx SINE Alu 0 312 1 568 206 39 116 chr1 7388204 7388312 -235276041 - L1M4 LINE L1 -3170 2976 2923 276 206 21 184 chr1 7388542 7388612 -235275741 + L2 LINE L2 2245 2325 -989 2243 114 3 0 chr1 7388612 7388930 -235275423 - AluSp SINE Alu 0 313 1 276 206 21 184 chr1 7388930 7388944 -235275409 + L2 LINE L2 2325 2340 -974 2110 130 3 3 chr1 7388944 7389243 -235275110 - AluSx SINE Alu -13 299 1 276 206 21 184 chr1 7389243 7389298 -235275055 + L2 LINE L2 2340 2362 -952 890 160 77 50 chr1 7389298 7389479 -235274874 + AluJo SINE Alu 1 186 -126 1896 148 7 10 chr1 7389585 7389890 -235274463 + AluSx SINE Alu 1 304 -8 1078 139 0 0 chr1 7389890 7390064 -235274289 + AluSg/x SINE Alu 134 307 0 342 0 0 0 chr1 7390408 7390446 -235273907 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2124 98 0 4 chr1 7390450 7390726 -235273627 - AluSx SINE Alu -37 275 1 400 186 10 49 chr1 7390726 7390828 -235273525 - MER39 LTR ERV1 -609 98 1 357 338 1 23 chr1 7393776 7393909 -235270444 - MIR3 SINE MIR -51 157 42 2262 124 0 0 chr1 7394292 7394591 -235269762 + AluSq SINE Alu 1 299 -14 2395 95 0 0 chr1 7394932 7395227 -235269126 + AluSx SINE Alu 1 295 -17 297 0 0 0 chr1 7395227 7395260 -235269093 + (TA)n Simple_repeat Simple_repeat 1 33 0 2372 97 0 0 chr1 7395529 7395828 -235268525 - AluSq SINE Alu -9 304 6 36 23 0 0 chr1 7396001 7396044 -235268309 + AT_rich Low_complexity Low_complexity 1 43 0 2000 145 3 13 chr1 7396346 7396650 -235267703 + AluJb SINE Alu 1 301 -11 466 224 56 8 chr1 7396756 7396881 -235267472 + MLT1J2 LTR MaLR 23 153 -297 244 254 16 0 chr1 7396960 7397023 -235267330 + MLT1J2 LTR MaLR 266 329 -121 255 286 41 61 chr1 7397147 7397245 -235267108 - L3 LINE CR1 -943 634 539 4138 133 31 2 chr1 7397394 7398011 -235266342 + MER41B LTR ERV1 1 635 0 1253 113 0 0 chr1 7398490 7398658 -235265695 + AluSq SINE Alu 140 307 -6 2110 128 0 39 chr1 7400212 7400518 -235263835 - AluJo SINE Alu -18 294 1 355 317 7 7 chr1 7400713 7400855 -235263498 - L1M4 LINE L1 -3329 2817 2676 2243 108 0 10 chr1 7401342 7401647 -235262706 + AluSx SINE Alu 1 302 -10 2009 119 0 11 chr1 7401647 7401931 -235262422 + AluSc SINE Alu 1 282 -27 502 218 0 0 chr1 7402047 7402148 -235262205 + U6 snRNA snRNA 1 101 -6 236 230 159 0 chr1 7402388 7402514 -235261839 + L1M4 LINE L1 2897 3042 -3104 2393 85 0 7 chr1 7402610 7402917 -235261436 + AluSc SINE Alu 2 306 -3 416 153 0 12 chr1 7402922 7403007 -235261346 - MER96B DNA MER1_type? -266 151 68 306 164 33 0 chr1 7403210 7403271 -235261082 + MER45 DNA AcHobo 44 106 -1475 239 175 0 0 chr1 7403265 7403305 -235261048 + MER45 DNA AcHobo 1542 1581 0 * 686 239 137 9 chr1 7404225 7404515 -235259838 + MER58B DNA MER1_type 6 341 0 2488 65 0 0 chr1 7405353 7405643 -235258710 + AluY SINE Alu 1 290 -21 2844 80 0 3 chr1 7405674 7406037 -235258316 + THE1B LTR MaLR 1 362 -2 572 310 57 27 chr1 7406290 7406625 -235257728 - L1ME4a LINE L1 -255 5866 5522 2379 100 0 0 chr1 7406642 7406941 -235257412 - AluSg SINE Alu -11 299 1 1652 130 8 8 chr1 7408333 7408606 -235255747 - AluJb SINE Alu 0 319 47 1985 145 3 0 chr1 7409336 7409626 -235254727 + AluJb SINE Alu 1 291 -21 907 117 0 0 chr1 7409634 7409754 -235254599 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7409772 7409847 -235254506 + A-rich Low_complexity Low_complexity 1 75 0 2488 77 3 0 chr1 7410260 7410559 -235253794 + AluSx SINE Alu 1 300 -12 2549 51 0 0 chr1 7410979 7411274 -235253079 + AluY SINE Alu 1 295 -16 1037 194 0 0 chr1 7411413 7411588 -235252765 - AluJ SINE Alu -13 299 125 65 74 0 0 chr1 7411588 7411723 -235252630 + AT_rich Low_complexity Low_complexity 1 135 0 1766 142 3 42 chr1 7411853 7412142 -235252211 + AluJb SINE Alu 5 282 -30 804 186 0 0 chr1 7412156 7412285 -235252068 - AluJ SINE Alu -169 133 5 252 0 0 0 chr1 7412302 7412330 -235252023 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 200 311 20 66 chr1 7412332 7412483 -235251870 - L3b LINE CR1 -258 1325 1182 2037 135 0 3 chr1 7412751 7413072 -235251281 - AluSg SINE Alu 0 320 1 2246 107 0 0 chr1 7413096 7413385 -235250968 - AluSx SINE Alu -17 295 7 2144 125 3 3 chr1 7413437 7413766 -235250587 + AluSq SINE Alu 1 313 0 1386 74 0 0 chr1 7413766 7413928 -235250425 + AluSg/x SINE Alu 134 295 -17 1670 172 0 47 chr1 7414087 7414406 -235249947 - AluJb SINE Alu -8 304 1 1234 185 14 14 chr1 7414844 7415066 -235249287 - AluJb SINE Alu -10 302 81 902 202 39 6 chr1 7415396 7415574 -235248779 + MIR SINE MIR 19 202 -60 1054 174 10 20 chr1 7415678 7415874 -235248479 - AluJo SINE Alu -13 299 106 2918 72 3 8 chr1 7415874 7416247 -235248106 + THE1C LTR MaLR 1 371 -4 745 183 0 0 chr1 7416247 7416361 -235247992 - AluJo SINE Alu -187 115 1 2291 122 3 3 chr1 7417059 7417371 -235246982 + AluSq SINE Alu 1 312 -1 613 237 34 31 chr1 7417508 7417717 -235246636 - MIR SINE MIR -49 213 7 2489 76 0 0 chr1 7417762 7418063 -235246290 - AluSq SINE Alu -12 301 1 324 282 237 1 chr1 7418861 7419049 -235245304 - MIR SINE MIR -11 251 23 380 279 146 22 chr1 7419325 7419640 -235244713 + L1M4 LINE L1 2148 2501 -3645 2154 108 0 78 chr1 7419640 7419975 -235244378 + AluSx SINE Alu 1 309 -3 439 125 0 9 chr1 7420043 7420306 -235244047 + AluSq SINE Alu 1 309 -4 314 309 31 24 chr1 7420309 7420386 -235243967 + L1M4 LINE L1 2609 2684 -3462 2309 103 0 0 chr1 7420386 7420687 -235243666 - AluSg SINE Alu -9 301 1 314 309 31 24 chr1 7420687 7420897 -235243456 + L1M4 LINE L1 2684 2898 -3248 23 0 0 0 chr1 7420924 7420947 -235243406 + AT_rich Low_complexity Low_complexity 1 23 0 1251 305 74 11 chr1 7420974 7421768 -235242585 + L1M4 LINE L1 3002 3845 -2301 617 213 57 189 chr1 7421798 7422465 -235241888 + MER21B LTR ERV1 13 591 -272 402 259 69 71 chr1 7422625 7422783 -235241570 + L1M4 LINE L1 3890 4047 -2099 2181 127 3 3 chr1 7422783 7423091 -235241262 - AluSq SINE Alu -5 308 1 402 259 69 71 chr1 7423091 7423411 -235240942 + L1M4 LINE L1 4047 4367 -1779 2297 92 3 3 chr1 7423535 7423829 -235240524 - AluSg SINE Alu -16 294 1 2061 98 63 3 chr1 7423831 7424116 -235240237 - AluSg SINE Alu -8 302 1 915 156 38 44 chr1 7424184 7424344 -235240009 + AluJb SINE Alu 137 295 -17 1576 199 42 63 chr1 7424349 7424659 -235239694 + L1ME2 LINE L1 5727 6042 -122 1768 161 10 30 chr1 7424659 7424958 -235239395 - AluJb SINE Alu -19 293 1 1576 199 42 63 chr1 7424958 7424976 -235239377 + L1ME2 LINE L1 6042 6059 -105 2073 110 18 4 chr1 7424976 7425257 -235239096 - AluSg SINE Alu -25 285 1 1576 199 42 63 chr1 7425257 7425374 -235238979 + L1ME2 LINE L1 6059 6164 0 1632 153 38 24 chr1 7425449 7425737 -235238616 - AluJo SINE Alu -9 303 12 1496 111 0 0 chr1 7425754 7425944 -235238409 - AluSg/x SINE Alu -13 299 110 456 131 0 0 chr1 7425944 7426005 -235238348 - AluS SINE Alu -248 63 3 894 143 0 7 chr1 7426015 7426155 -235238198 - AluJb SINE Alu -18 294 156 2217 116 3 3 chr1 7426739 7427040 -235237313 - AluSx SINE Alu -11 301 1 2315 91 0 10 chr1 7427323 7427458 -235236895 + AluSx SINE Alu 1 136 -176 2487 70 0 0 chr1 7427458 7427757 -235236596 + AluY SINE Alu 1 299 -12 2315 91 0 10 chr1 7427757 7427918 -235236435 + AluSx SINE Alu 136 294 -18 1874 160 3 22 chr1 7428000 7428318 -235236035 + AluJb SINE Alu 1 312 0 999 173 0 0 chr1 7428318 7428480 -235235873 + AluJo/FRAM SINE Alu 144 305 -7 505 325 202 22 chr1 7428726 7429092 -235235261 + L2 LINE L2 2840 3271 -1 954 110 0 0 chr1 7429419 7429546 -235234807 - FLAM_C SINE Alu -16 127 1 670 101 0 0 chr1 7429718 7429807 -235234546 + AluSx SINE Alu 4 92 -220 2416 81 0 7 chr1 7429807 7430103 -235234250 + AluY SINE Alu 1 294 -17 1571 92 53 0 chr1 7430101 7430307 -235234046 + AluSx SINE Alu 71 287 -23 * 27 29 0 0 chr1 7431044 7431078 -235233275 + AT_rich Low_complexity Low_complexity 1 34 0 256 188 29 0 chr1 7431252 7431321 -235233032 + CT-rich Low_complexity Low_complexity 2 72 0 1934 128 4 11 chr1 7431720 7431994 -235232359 - AluSq SINE Alu -41 272 1 2214 116 7 19 chr1 7432003 7432176 -235232177 - AluSp SINE Alu -7 306 137 2235 96 28 0 chr1 7432176 7432467 -235231886 - AluSg SINE Alu -9 301 3 2214 116 7 19 chr1 7432467 7432603 -235231750 - AluSp SINE Alu -176 137 1 2139 126 0 0 chr1 7433212 7433505 -235230848 - AluSx SINE Alu -11 301 9 351 0 0 0 chr1 7433551 7433590 -235230763 + (TG)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr1 7434138 7434172 -235230181 + AT_rich Low_complexity Low_complexity 1 34 0 739 157 9 0 chr1 7434172 7434287 -235230066 - AluJb SINE Alu -194 118 3 540 275 30 67 chr1 7434994 7435090 -235229263 - MLT1I LTR MaLR -150 259 161 2117 138 32 35 chr1 7435090 7435466 -235228887 - THE1C LTR MaLR 0 375 1 540 275 30 67 chr1 7435466 7435596 -235228757 - MLT1I LTR MaLR -248 161 42 1574 167 13 45 chr1 7435596 7435735 -235228618 + AluJo SINE Alu 1 143 -169 2040 73 0 8 chr1 7435735 7435994 -235228359 + AluSc SINE Alu 40 296 -13 1574 167 13 45 chr1 7435994 7436165 -235228188 + AluJo SINE Alu 143 301 -11 540 275 30 67 chr1 7436165 7436206 -235228147 - MLT1I LTR MaLR -367 42 1 1895 185 22 53 chr1 7436357 7436536 -235227817 + L1MB8 LINE L1 5724 5907 -271 2401 66 3 13 chr1 7436536 7436837 -235227516 + AluY SINE Alu 2 299 -12 1895 185 22 53 chr1 7436837 7437110 -235227243 + L1MB8 LINE L1 5907 6162 -16 289 264 88 22 chr1 7437493 7437584 -235226769 + L2 LINE L2 3155 3251 -21 217 104 0 42 chr1 7437586 7437634 -235226719 + (TAA)n Simple_repeat Simple_repeat 3 48 0 550 75 0 0 chr1 7437698 7437765 -235226588 - AluSg/x SINE Alu -83 229 163 812 132 5 138 chr1 7437769 7437922 -235226431 + L1MB7 LINE L1 6002 6127 -57 1842 138 38 28 chr1 7437922 7438211 -235226142 + AluJb SINE Alu 1 292 -20 812 132 5 138 chr1 7438211 7438246 -235226107 + L1MB7 LINE L1 6127 6165 -19 2259 121 0 0 chr1 7439582 7439887 -235224466 + AluSq SINE Alu 1 305 -8 1266 260 39 41 chr1 7440196 7440397 -235223956 + MLT2C2 LTR ERVL 1 201 -263 2434 77 3 10 chr1 7440397 7440709 -235223644 + AluSg SINE Alu 1 310 0 2324 109 3 0 chr1 7440711 7441015 -235223338 + AluSp SINE Alu 1 305 -8 1266 260 39 41 chr1 7441015 7441057 -235223296 + MLT2C2 LTR ERVL 202 243 -221 752 172 0 26 chr1 7441057 7441195 -235223158 + L1MB3 LINE L1 6035 6170 -13 1895 193 25 6 chr1 7441195 7441552 -235222801 + MLT1A1 LTR MaLR 1 364 -1 752 172 0 26 chr1 7441552 7441564 -235222789 + L1MB3 LINE L1 6170 6181 -2 1266 260 39 41 chr1 7441564 7441577 -235222776 + MLT2C2 LTR ERVL 243 255 -209 1821 145 0 30 chr1 7441577 7441873 -235222480 + AluJb SINE Alu 1 287 -25 1266 260 39 41 chr1 7441873 7442076 -235222277 + MLT2C2 LTR ERVL 255 464 0 289 304 63 0 chr1 7442847 7442926 -235221427 + MIR SINE MIR 23 106 -102 380 144 10 31 chr1 7443064 7443161 -235221192 + CT-rich Low_complexity Low_complexity 3 97 0 793 149 0 28 chr1 7443161 7443342 -235221011 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1028 105 0 0 chr1 7443344 7443477 -235220876 - FLAM_C SINE Alu 0 133 1 1921 233 136 21 chr1 7443682 7444342 -235220011 - MER21B LTR ERV1 -127 736 1 2440 92 0 0 chr1 7444372 7444677 -235219676 - AluSx SINE Alu -7 305 1 1094 170 0 0 chr1 7445041 7445212 -235219141 + AluJb SINE Alu 130 300 -12 1894 146 3 55 chr1 7446432 7446761 -235217592 + AluJb SINE Alu 1 312 0 5148 110 100 3 chr1 7447288 7448041 -235216312 + LTR12 LTR ERV1 1 826 0 316 321 121 0 chr1 7448193 7448333 -235216020 + MIR3 SINE MIR 51 207 -1 2199 120 0 7 chr1 7448436 7448735 -235215618 - AluSx SINE Alu -15 297 1 1591 161 49 18 chr1 7449067 7449352 -235215001 + AluJb SINE Alu 1 294 -18 2097 187 29 37 chr1 7449595 7449718 -235214635 - L1MD3 LINE L1 0 7995 7873 2326 103 7 0 chr1 7449718 7450018 -235214335 - AluSx SINE Alu -6 306 5 2097 187 29 37 chr1 7450018 7450424 -235213929 - L1MD3 LINE L1 -122 7873 5815 225 108 0 0 chr1 7450425 7450462 -235213891 + (T)n Simple_repeat Simple_repeat 1 37 0 1132 132 5 63 chr1 7450477 7450667 -235213686 - AluJo SINE Alu -133 179 1 598 226 0 0 chr1 7450667 7450791 -235213562 - L1MD3 LINE L1 -519 5825 5702 2142 144 0 0 chr1 7450949 7451255 -235213098 + AluSx SINE Alu 1 306 -6 696 156 0 67 chr1 7451428 7451563 -235212790 + FLAM_C SINE Alu 14 139 -4 225 253 152 72 chr1 7452012 7452047 -235212306 - HAL1 LINE L1 -125 2382 2351 1173 83 6 24 chr1 7452047 7452215 -235212138 - L1PA10 LINE L1 -3 6165 6001 225 253 152 72 chr1 7452215 7452294 -235212059 - HAL1 LINE L1 -156 2351 2280 2190 101 3 10 chr1 7452294 7452592 -235211761 - AluSx SINE Alu -16 296 1 225 253 152 72 chr1 7452592 7453098 -235211255 - HAL1 LINE L1 -227 2280 1675 296 158 66 26 chr1 7453427 7453503 -235210850 - MER5B DNA MER1_type -95 83 5 2362 98 0 19 chr1 7453848 7454165 -235210188 - AluY SINE Alu 0 311 1 1964 135 45 0 chr1 7454214 7454502 -235209851 + AluJb SINE Alu 1 301 -11 278 323 8 53 chr1 7454811 7454944 -235209409 + MIR SINE MIR 56 182 -80 672 205 145 0 chr1 7455288 7455454 -235208899 - MLT1B LTR MaLR 0 390 201 2027 150 0 3 chr1 7455484 7455797 -235208556 - AluJb SINE Alu 0 312 1 2342 80 0 10 chr1 7455847 7456173 -235208180 - AluY SINE Alu 0 311 1 586 176 55 93 chr1 7456309 7456491 -235207862 - MLT1B LTR MaLR -211 179 5 279 0 0 0 chr1 7456493 7456524 -235207829 + (CA)n Simple_repeat Simple_repeat 1 31 0 1829 176 28 11 chr1 7456747 7457110 -235207243 + L1MA4 LINE L1 5914 6282 -18 2201 119 0 0 chr1 7457111 7457405 -235206948 - AluSx SINE Alu -18 294 1 185 62 0 31 chr1 7458314 7458346 -235206007 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1937 141 0 14 chr1 7458348 7458632 -235205721 - AluJb SINE Alu -28 284 5 2300 101 0 0 chr1 7458808 7459104 -235205249 + AluSc SINE Alu 1 296 -13 791 211 78 14 chr1 7459175 7459393 -235204960 + Zaphod DNA AcHobo 3800 4031 0 384 217 30 55 chr1 7459411 7459442 -235204911 - MLT1J LTR MaLR -172 443 413 1803 148 42 0 chr1 7459442 7459726 -235204627 - AluJo SINE Alu -16 296 1 384 217 30 55 chr1 7459726 7459842 -235204511 - MLT1J LTR MaLR -202 413 224 2352 112 0 3 chr1 7459961 7460274 -235204079 - AluSq SINE Alu -1 312 1 312 70 0 0 chr1 7460275 7460318 -235204035 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1075 134 0 0 chr1 7460318 7460467 -235203886 - AluSg/x SINE Alu -27 283 135 286 288 0 12 chr1 7460502 7460582 -235203771 - MLT1L LTR MaLR -536 79 1 2060 118 3 58 chr1 7461483 7461813 -235202540 - AluSx SINE Alu 0 312 1 626 189 39 8 chr1 7462108 7462235 -235202118 - FLAM_C SINE Alu -2 131 1 1937 139 7 10 chr1 7462285 7462588 -235201765 + AluJb SINE Alu 1 302 -10 2369 82 0 13 chr1 7463658 7463963 -235200390 - AluY SINE Alu -10 301 1 2121 120 3 7 chr1 7464270 7464571 -235199782 - AluJo SINE Alu -2 310 11 1643 172 43 13 chr1 7465449 7465752 -235198601 + AluSx SINE Alu 1 312 0 838 281 46 7 chr1 7466050 7466356 -235197997 + MLT2E LTR ERVL 2 319 -309 425 265 75 40 chr1 7466451 7466651 -235197702 + L1MC5 LINE L1 7717 7923 -38 746 152 91 15 chr1 7467925 7468057 -235196296 + FLAM_C SINE Alu 2 143 0 32 43 0 0 chr1 7468057 7468103 -235196250 + AT_rich Low_complexity Low_complexity 1 46 0 533 202 0 0 chr1 7468111 7468200 -235196153 - AluJb SINE Alu -82 230 142 567 301 62 51 chr1 7468212 7468621 -235195732 + MER34 LTR ERV1 50 466 -76 2028 140 3 31 chr1 7468621 7468942 -235195411 - AluJb SINE Alu 0 312 1 567 301 62 51 chr1 7468942 7469020 -235195333 + MER34 LTR ERV1 466 542 0 349 267 67 7 chr1 7469263 7469413 -235194940 - L1MA10 LINE L1 0 6334 6176 2263 100 7 0 chr1 7469458 7469747 -235194606 + AluSx SINE Alu 1 291 -21 2582 79 0 0 chr1 7470159 7470463 -235193890 - AluSx SINE Alu -8 304 1 1785 159 0 40 chr1 7470477 7470779 -235193574 - AluJb SINE Alu -22 290 1 1782 151 10 30 chr1 7470853 7471151 -235193202 + AluJo SINE Alu 14 305 -7 2058 121 109 73 chr1 7471337 7471516 -235192837 + MSTA LTR MaLR 1 172 -256 2541 76 0 0 chr1 7471516 7471819 -235192534 + AluSx SINE Alu 1 303 -9 2058 121 109 73 chr1 7471819 7472051 -235192302 + MSTA LTR MaLR 172 427 -1 2334 94 3 0 chr1 7472161 7472459 -235191894 - AluSx SINE Alu -13 299 1 2180 113 27 0 chr1 7472635 7472936 -235191417 + AluSx SINE Alu 1 309 -3 1900 144 3 41 chr1 7473086 7473405 -235190948 + AluJo SINE Alu 1 307 -5 215 207 0 52 chr1 7473872 7473930 -235190423 + CT-rich Low_complexity Low_complexity 5 59 0 2164 163 14 8 chr1 7473981 7474344 -235190009 - MLT1A1 LTR MaLR 0 365 1 2246 97 82 48 chr1 7474467 7474776 -235189577 + THE1B LTR MaLR 1 325 -39 2274 105 3 0 chr1 7474776 7475080 -235189273 - AluSq SINE Alu -8 305 1 2246 97 82 48 chr1 7475080 7475122 -235189231 + THE1B LTR MaLR 325 364 0 1976 214 165 11 chr1 7475575 7475743 -235188610 + L1MC4 LINE L1 6459 6600 -1442 2197 111 10 7 chr1 7475743 7476041 -235188312 - AluSx SINE Alu -13 299 1 1976 214 165 11 chr1 7476041 7476399 -235187954 + L1MC4 LINE L1 6600 7066 -976 1106 288 186 19 chr1 7476407 7476654 -235187699 + L1MC4 LINE L1 7240 7444 -598 2931 157 30 106 chr1 7476654 7476919 -235187434 + LTR8 LTR ERV1 1 285 -406 2432 89 3 6 chr1 7476919 7477232 -235187121 + AluSp SINE Alu 1 312 -1 2931 157 30 106 chr1 7477232 7477712 -235186641 + LTR8 LTR ERV1 285 689 -2 1106 288 186 19 chr1 7477712 7477927 -235186426 + L1MC4 LINE L1 7444 7622 -420 4004 91 19 2 chr1 7477927 7478468 -235185885 + MER41A LTR ERV1 1 550 -4 1106 288 186 19 chr1 7478468 7478573 -235185780 + L1MC4 LINE L1 7622 7903 -139 304 379 0 0 chr1 7478906 7479022 -235185331 + L2 LINE L2 3197 3312 -1 1928 160 3 3 chr1 7479087 7479399 -235184954 - AluJb SINE Alu 0 312 1 387 230 137 52 chr1 7480746 7481006 -235183347 - LTR48 LTR ERV1 -3 738 387 426 256 16 23 chr1 7481104 7481233 -235183120 - MER34 LTR ERV1 -411 131 4 21 36 0 0 chr1 7481242 7481270 -235183083 + AT_rich Low_complexity Low_complexity 1 28 0 2243 120 0 7 chr1 7481271 7481579 -235182774 + AluSx SINE Alu 1 306 -6 778 236 56 23 chr1 7481674 7481890 -235182463 + MIR SINE MIR 28 250 -12 2293 113 0 3 chr1 7482070 7482380 -235181973 - AluSx SINE Alu -3 309 1 2411 85 3 0 chr1 7483034 7483340 -235181013 + AluY SINE Alu 1 307 -4 300 27 0 0 chr1 7483713 7483750 -235180603 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1859 113 50 7 chr1 7484565 7484847 -235179506 - AluSx SINE Alu -18 294 1 1626 180 65 0 chr1 7485752 7486030 -235178323 - AluJo SINE Alu -16 296 1 292 182 0 39 chr1 7486035 7486112 -235178241 - L1MC2 LINE L1 0 6344 6271 1086 166 10 30 chr1 7486217 7486416 -235177937 + AluJo SINE Alu 16 210 -102 1417 89 0 31 chr1 7486432 7486623 -235177730 - AluSq SINE Alu -52 261 77 937 152 0 26 chr1 7486625 7486776 -235177577 + AluJo/FRAM SINE Alu 156 302 -10 794 131 26 13 chr1 7486779 7487445 -235176908 + (TG)n Simple_repeat Simple_repeat 1 674 0 239 270 34 27 chr1 7487460 7487608 -235176745 + (TG)n Simple_repeat Simple_repeat 1 149 0 690 163 59 0 chr1 7489959 7490094 -235174259 + L1MB4 LINE L1 6038 6180 0 453 226 111 51 chr1 7490242 7490477 -235173876 + HAL1 LINE L1 923 1171 -1336 1042 321 76 35 chr1 7490582 7491146 -235173207 + ERVL LTR ERVL 4144 4730 -1034 207 0 0 0 chr1 7492058 7492081 -235172272 + (CA)n Simple_repeat Simple_repeat 2 24 0 967 257 55 25 chr1 7492961 7493323 -235171030 + L1MC5 LINE L1 7073 7445 -516 2094 268 70 8 chr1 7493438 7494068 -235170285 + ERVL LTR ERVL 24 692 -5072 1503 218 13 7 chr1 7494262 7494560 -235169793 + AluJb SINE Alu 1 300 -12 405 175 25 0 chr1 7494961 7495041 -235169312 - L1 LINE L1 -2515 3631 3550 195 355 23 65 chr1 7495063 7495091 -235169262 - MIR SINE MIR -32 230 202 2083 115 36 0 chr1 7495091 7495370 -235168983 - AluSg SINE Alu -21 289 1 195 355 23 65 chr1 7495370 7495555 -235168798 - MIR SINE MIR -60 202 26 1079 220 45 19 chr1 7495766 7496030 -235168323 + MER58 DNA MER1_type 1 271 -2149 928 119 0 0 chr1 7496130 7496256 -235168097 - AluJb SINE Alu -186 126 1 28 29 0 0 chr1 7496256 7496291 -235168062 + AT_rich Low_complexity Low_complexity 1 35 0 200 270 175 22 chr1 7498023 7498160 -235166193 + MIR SINE MIR 99 256 -6 191 239 80 80 chr1 7498431 7498607 -235165746 - L2 LINE L2 -368 2946 2771 270 128 0 0 chr1 7499655 7499694 -235164659 + Alu SINE Alu 1 39 -264 337 237 172 0 chr1 7500016 7500109 -235164244 + L2 LINE L2 3134 3242 -30 701 305 65 4 chr1 7500665 7500911 -235163442 - MIR SINE MIR 0 262 2 207 0 0 0 chr1 7501469 7501492 -235162861 + (A)n Simple_repeat Simple_repeat 1 23 0 534 286 84 26 chr1 7501677 7501904 -235162449 + MIR SINE MIR 2 241 -21 239 340 28 0 chr1 7503301 7503407 -235160946 + GA-rich Low_complexity Low_complexity 2 110 0 969 253 77 7 chr1 7503660 7503960 -235160393 + L2 LINE L2 1598 1918 -1396 222 286 152 18 chr1 7504967 7505079 -235159274 + L2 LINE L2 3139 3265 -7 260 232 146 0 chr1 7506039 7506121 -235158232 - L2 LINE L2 0 3313 3220 806 228 94 20 chr1 7506338 7506540 -235157813 + MER20 DNA MER1_type 1 217 -2 270 186 35 12 chr1 7506670 7506756 -235157597 + (TA)n Simple_repeat Simple_repeat 2 89 0 678 207 60 0 chr1 7508025 7508175 -235156178 + MIR SINE MIR 77 235 -27 508 290 52 10 chr1 7508319 7508512 -235155841 - MIR SINE MIR -26 236 36 206 250 48 65 chr1 7508567 7508691 -235155662 - L2 LINE L2 -93 3220 3099 2272 119 0 0 chr1 7509202 7509497 -235154856 + AluSx SINE Alu 1 295 -17 535 199 175 18 chr1 7509639 7509805 -235154548 - MIR SINE MIR -39 223 32 249 208 19 0 chr1 7513026 7513079 -235151274 - L2 LINE L2 -215 3057 3004 225 326 90 17 chr1 7513098 7513276 -235151077 - L2 LINE L2 0 3313 3123 447 301 78 5 chr1 7513530 7513749 -235150604 + MIR SINE MIR 16 250 -12 191 245 245 11 chr1 7514507 7514601 -235149752 - MIR SINE MIR -116 146 31 388 211 0 0 chr1 7515129 7515205 -235149148 - MER116 DNA Mariner 0 80 5 215 236 255 0 chr1 7515277 7515383 -235148970 - L2 LINE L2 -11 3302 3170 736 150 0 0 chr1 7515796 7515909 -235148444 + L1PB4 LINE L1 6037 6149 -7 798 228 92 99 chr1 7516726 7517129 -235147224 - MLT1L LTR MaLR -9 606 207 269 268 0 0 chr1 7517105 7517161 -235147192 - MLT1J LTR MaLR -345 166 111 * 225 303 10 81 chr1 7517161 7517204 -235147149 - LTR67 LTR ERVL -386 171 80 4293 97 26 3 chr1 7517536 7518103 -235146250 + THE1A-int LTR MaLR 1001 1580 0 2737 82 6 0 chr1 7518103 7518456 -235145897 + THE1A LTR MaLR 1 355 0 1005 274 255 23 chr1 7519245 7520036 -235144317 - L2 LINE L2 -2094 1220 246 1145 222 14 0 chr1 7520680 7520901 -235143452 + MER58A DNA MER1_type 1 224 0 10866 17 1 0 chr1 7521852 7523871 -235140482 + L1PA3 LINE L1 4131 6150 -5 2008 88 11 18 chr1 7524269 7524542 -235139811 - AluSp SINE Alu -42 271 1 2278 97 3 0 chr1 7525635 7525943 -235138410 + AluSc SINE Alu 1 309 0 2063 105 4 0 chr1 7525985 7526261 -235138092 + AluSx SINE Alu 1 277 -35 2051 134 3 0 chr1 7526322 7526621 -235137732 + AluSx SINE Alu 1 300 -12 2430 81 10 10 chr1 7526974 7527284 -235137069 + AluSg SINE Alu 1 310 0 21 57 0 0 chr1 7527810 7527845 -235136508 + AT_rich Low_complexity Low_complexity 1 35 0 2295 99 3 0 chr1 7527849 7528143 -235136210 - AluSq SINE Alu -18 295 1 2091 92 56 0 chr1 7528578 7528862 -235135491 - AluSg SINE Alu -10 300 1 1691 155 6 75 chr1 7530525 7530886 -235133467 + MER2 DNA MER2_type 2 337 -8 528 276 105 20 chr1 7530903 7531055 -235133298 + MIR SINE MIR 91 255 -7 200 364 35 28 chr1 7531065 7531208 -235133145 - L2 LINE L2 -540 2774 2631 1022 92 32 38 chr1 7531229 7531414 -235132939 - LTR54 LTR ERV1 0 510 327 414 209 35 52 chr1 7531406 7531521 -235132832 - Tigger1 DNA MER2_type -2302 116 4 * 2027 142 0 7 chr1 7531814 7532116 -235132237 + AluSx SINE Alu 2 301 -11 2145 117 7 0 chr1 7532363 7532653 -235131700 - AluSx SINE Alu -20 292 1 260 179 13 0 chr1 7532857 7532935 -235131418 + CT-rich Low_complexity Low_complexity 1 79 0 375 231 74 91 chr1 7532947 7533143 -235131210 + L2 LINE L2 3076 3269 -44 1886 83 8 38 chr1 7533143 7533408 -235130945 - AluSc SINE Alu -16 293 37 375 231 74 91 chr1 7533408 7533453 -235130900 + L2 LINE L2 3269 3313 0 696 279 104 5 chr1 7534514 7534736 -235129617 - MIR SINE MIR -12 250 7 262 294 39 0 chr1 7536830 7536932 -235127421 - HAL1 LINE L1 -83 2424 2319 1660 176 22 45 chr1 7536933 7537246 -235127107 - AluJb SINE Alu -6 306 1 874 230 11 0 chr1 7537254 7537445 -235126908 - AluJb SINE Alu -2 310 118 1769 186 4 0 chr1 7537525 7537800 -235126553 - AluJb SINE Alu -31 281 6 943 213 163 80 chr1 7537832 7537913 -235126440 - HAL1 LINE L1 -297 2210 2137 2296 74 3 0 chr1 7537913 7538197 -235126156 - AluSq SINE Alu -28 285 1 943 213 163 80 chr1 7538197 7538255 -235126098 - HAL1 LINE L1 -370 2137 2085 2206 107 0 0 chr1 7538255 7538545 -235125808 + AluSc SINE Alu 1 290 -19 943 213 163 80 chr1 7538545 7539042 -235125311 - HAL1 LINE L1 -422 2085 1520 23 0 0 0 chr1 7539255 7539278 -235125075 + AT_rich Low_complexity Low_complexity 1 23 0 2215 111 0 0 chr1 7539656 7539975 -235124378 - AluSq SINE Alu 0 319 1 24 0 0 0 chr1 7539979 7540003 -235124350 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr1 7540110 7540146 -235124207 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr1 7540615 7540652 -235123701 + AT_rich Low_complexity Low_complexity 1 37 0 2176 110 0 0 chr1 7542240 7542530 -235121823 - AluSx SINE Alu 0 312 23 2324 80 10 0 chr1 7542612 7542912 -235121441 + AluY SINE Alu 1 303 -8 248 296 82 22 chr1 7543630 7543765 -235120588 + L1MC/D LINE L1 5682 5824 -1984 818 128 14 43 chr1 7544009 7544150 -235120203 + FLAM_C SINE Alu 1 137 -6 2505 61 0 26 chr1 7544208 7544521 -235119832 + AluY SINE Alu 2 306 -5 1871 105 83 78 chr1 7544605 7544801 -235119552 - THE1B LTR MaLR 0 364 164 1907 135 6 52 chr1 7544801 7545127 -235119226 + AluSx SINE Alu 1 311 -1 1871 105 83 78 chr1 7545127 7545291 -235119062 - THE1B LTR MaLR -200 164 2 1371 181 115 0 chr1 7545311 7545615 -235118738 - MER44D DNA MER2_type 0 609 1 698 176 50 0 chr1 7547135 7547254 -235117099 - FLAM_A SINE Alu -8 125 1 2409 81 10 0 chr1 7547285 7547592 -235116761 - AluY SINE Alu -1 310 1 292 320 0 0 chr1 7547898 7547973 -235116380 - L2 LINE L2 -194 3078 3004 231 335 66 36 chr1 7548780 7548947 -235115406 + MIR SINE MIR 37 208 -54 375 23 0 0 chr1 7551815 7551859 -235112494 + (TG)n Simple_repeat Simple_repeat 2 45 0 2298 106 0 0 chr1 7552818 7553120 -235111233 - AluSg SINE Alu -6 304 3 443 274 137 21 chr1 7553785 7554019 -235110334 + MIR SINE MIR 2 262 0 * 469 246 105 9 chr1 7553987 7554101 -235110252 - L2 LINE L2 -22 3291 3167 461 133 0 36 chr1 7554151 7554234 -235110119 + AluJ/FRAM SINE Alu 224 303 -9 730 146 0 83 chr1 7554329 7554473 -235109880 + FLAM_C SINE Alu 1 132 -1 22 56 0 0 chr1 7555028 7555064 -235109289 + AT_rich Low_complexity Low_complexity 1 36 0 417 91 15 0 chr1 7555064 7555130 -235109223 + MER41B LTR ERV1 481 547 -88 2212 82 14 0 chr1 7555459 7555750 -235108603 + AluY SINE Alu 1 295 -16 21 36 0 0 chr1 7555793 7555821 -235108532 + AT_rich Low_complexity Low_complexity 1 28 0 2202 114 0 3 chr1 7556214 7556520 -235107833 - AluSx SINE Alu -7 305 1 1786 166 7 3 chr1 7556527 7556817 -235107536 - AluSx SINE Alu -21 291 1 4493 206 44 16 chr1 7556817 7557374 -235106979 - L1P4 LINE L1 -383 5785 5245 1873 141 3 36 chr1 7557374 7557678 -235106675 - AluSx SINE Alu -18 294 1 4493 206 44 16 chr1 7557678 7558373 -235105980 - L1P4 LINE L1 -923 5245 4477 2142 136 0 0 chr1 7558373 7558667 -235105686 - AluSg SINE Alu -16 294 1 4493 206 44 16 chr1 7558667 7559057 -235105296 - L1P4 LINE L1 -1691 4477 4099 4471 161 29 9 chr1 7559219 7560085 -235104268 - L1MC2 LINE L1 -1 6343 5461 821 140 54 59 chr1 7560434 7560497 -235103856 - MER2 DNA MER2_type -160 185 123 2065 138 3 7 chr1 7560497 7560802 -235103551 + AluSx SINE Alu 1 304 -8 821 140 54 59 chr1 7560802 7560924 -235103429 - MER2 DNA MER2_type -222 123 1 2271 85 0 0 chr1 7561951 7562268 -235102085 + AluSc SINE Alu 1 317 0 1524 195 8 57 chr1 7562690 7563075 -235101278 + MLT1A2 LTR MaLR 1 366 -8 333 171 0 45 chr1 7564092 7564180 -235100173 - L1MB8 LINE L1 -1 6177 6094 1235 144 14 0 chr1 7564180 7564395 -235099958 - MER47A DNA MER2_type -1 365 148 236 255 0 0 chr1 7564401 7564448 -235099905 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 1051 188 99 14 chr1 7564455 7564553 -235099800 - AluJo SINE Alu -66 246 158 1931 126 23 26 chr1 7564553 7564863 -235099490 - AluSx SINE Alu -3 309 1 1051 188 99 14 chr1 7564863 7564987 -235099366 - AluJo SINE Alu -154 158 5 601 226 0 8 chr1 7564987 7565120 -235099233 - MER47A DNA MER2_type -234 132 1 1067 269 161 81 chr1 7565657 7566382 -235097971 + L2 LINE L2 1230 1895 -1419 2326 101 0 0 chr1 7566382 7566679 -235097674 - AluSq SINE Alu -16 297 1 1067 269 161 81 chr1 7566679 7566864 -235097489 + L2 LINE L2 1895 2064 -1250 1929 169 0 7 chr1 7566864 7567166 -235097187 + AluJb SINE Alu 1 300 -12 1067 269 161 81 chr1 7567166 7567319 -235097034 + L2 LINE L2 2064 2380 -934 1296 63 0 84 chr1 7567517 7567707 -235096646 - AluY SINE Alu -137 174 1 1802 174 3 0 chr1 7567989 7568271 -235096082 + AluJo SINE Alu 1 283 -29 311 64 0 21 chr1 7568271 7568318 -235096035 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 198 0 0 0 chr1 7569181 7569203 -235095150 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 1934 138 3 0 chr1 7569203 7569486 -235094867 - AluSq SINE Alu -29 284 1 21 0 0 0 chr1 7569486 7569507 -235094846 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr1 7570088 7570115 -235094238 + (T)n Simple_repeat Simple_repeat 1 27 0 1086 176 40 10 chr1 7574030 7574229 -235090124 + MER3 DNA MER1_type 1 205 -4 1805 86 11 156 chr1 7574424 7574783 -235089570 - AluSc SINE Alu -2 307 1 479 284 44 38 chr1 7575306 7575489 -235088864 - MIR SINE MIR -14 248 65 2342 95 13 0 chr1 7575693 7575999 -235088354 - AluSx SINE Alu -2 310 1 1414 167 31 0 chr1 7577132 7577359 -235086994 + MER46A DNA MER2_type 1 234 -2 528 16 0 0 chr1 7577359 7577420 -235086933 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1142 123 0 0 chr1 7577420 7577574 -235086779 - AluSq SINE Alu -27 286 133 470 113 0 0 chr1 7577574 7577636 -235086717 - AluJ SINE Alu -131 181 120 850 172 0 8 chr1 7577637 7577771 -235086582 - AluJ SINE Alu -169 133 1 27 49 0 0 chr1 7579058 7579099 -235085254 + AT_rich Low_complexity Low_complexity 1 41 0 1557 168 51 7 chr1 7579106 7579380 -235084973 - AluJb SINE Alu -21 291 6 2203 92 11 0 chr1 7579751 7580056 -235084297 + AluSq SINE Alu 1 308 0 1572 200 3 3 chr1 7580673 7580973 -235083380 + AluJo SINE Alu 1 300 -12 725 147 0 66 chr1 7581023 7581159 -235083194 - FLAM_C SINE Alu -16 127 1 996 233 324 29 chr1 7581965 7582792 -235081561 + L2 LINE L2 2183 3310 -3 482 110 30 70 chr1 7583680 7583748 -235080605 - L1MB7 LINE L1 0 6184 6115 1672 130 3 98 chr1 7583748 7584064 -235080289 + AluJb SINE Alu 1 286 -26 482 0 17 0 chr1 7584064 7584122 -235080231 + (CA)n Simple_repeat Simple_repeat 2 60 0 482 110 30 70 chr1 7584122 7584152 -235080201 - L1MB7 LINE L1 -67 6117 6089 356 0 23 0 chr1 7584178 7584222 -235080131 + (CA)n Simple_repeat Simple_repeat 2 46 0 1702 190 36 12 chr1 7584223 7584600 -235079753 - L1MB8 LINE L1 -63 6115 5728 1171 190 14 23 chr1 7585076 7585297 -235079056 + MER20 DNA MER1_type 1 219 0 2133 111 0 7 chr1 7585446 7585754 -235078599 - AluSx SINE Alu 0 306 1 550 311 34 0 chr1 7587068 7587245 -235077108 + MIR SINE MIR 2 184 -78 303 153 141 59 chr1 7587348 7587433 -235076920 + MIR SINE MIR 171 262 0 709 353 70 26 chr1 7587747 7588474 -235075879 - L2 LINE L2 -38 3234 2475 791 136 0 9 chr1 7588474 7588584 -235075769 + AluJo SINE Alu 49 157 -155 329 310 148 35 chr1 7588599 7588970 -235075383 - L2 LINE L2 -963 2351 1939 214 258 147 85 chr1 7589035 7589388 -235074965 - L2 LINE L2 -79 3193 2819 326 143 14 29 chr1 7589436 7589506 -235074847 + L1MB8 LINE L1 6110 6178 0 237 298 16 99 chr1 7589536 7589657 -235074696 - L2 LINE L2 -625 2689 2579 504 270 44 53 chr1 7590151 7590377 -235073976 - MIR SINE MIR -11 251 28 1487 181 0 77 chr1 7590428 7590754 -235073599 - AluJo SINE Alu -11 301 1 1002 254 195 45 chr1 7591265 7592254 -235072099 + L2 LINE L2 2169 3309 -4 208 255 174 67 chr1 7592557 7592706 -235071647 + MIR SINE MIR 28 192 -70 30 83 0 0 chr1 7593029 7593101 -235071252 + AT_rich Low_complexity Low_complexity 1 72 0 2171 122 0 0 chr1 7593568 7593872 -235070481 - AluSx SINE Alu -8 304 1 2326 101 3 0 chr1 7594363 7594671 -235069682 - AluY SINE Alu -2 309 1 264 308 132 0 chr1 7594856 7594947 -235069406 + L2 LINE L2 3168 3270 -2 26 0 0 0 chr1 7594984 7595010 -235069343 + AT_rich Low_complexity Low_complexity 1 26 0 2059 127 20 0 chr1 7595288 7595580 -235068773 - AluSx SINE Alu -14 298 1 2338 92 0 16 chr1 7595808 7596124 -235068229 - AluY SINE Alu 0 311 1 733 197 0 8 chr1 7596182 7596314 -235068039 - FLAM_C SINE Alu -2 131 1 192 226 0 0 chr1 7596856 7596918 -235067435 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 2257 105 3 0 chr1 7597639 7597934 -235066419 + AluSx SINE Alu 1 296 -16 1929 128 7 17 chr1 7598231 7598519 -235065834 + AluJb SINE Alu 24 308 -4 1416 169 32 18 chr1 7598809 7599087 -235065266 + AluJo SINE Alu 1 282 -30 2384 55 41 0 chr1 7599428 7599719 -235064634 - AluY SINE Alu -8 303 1 261 235 147 20 chr1 7599937 7600039 -235064314 - MER103 DNA DNA -7 159 45 578 218 0 0 chr1 7600148 7600249 -235064104 + FAM SINE Alu 2 102 -83 2305 152 24 8 chr1 7600307 7600676 -235063677 + THE1C LTR MaLR 1 375 0 875 225 25 0 chr1 7601165 7601325 -235063028 + FRAM SINE Alu 1 164 -2 897 194 25 0 chr1 7601404 7601564 -235062789 - AluJb SINE Alu -11 301 138 1547 201 15 0 chr1 7601740 7602013 -235062340 - AluJo SINE Alu -35 277 1 1931 103 3 125 chr1 7602038 7602234 -235062119 - AluSx SINE Alu -9 293 151 2381 82 0 0 chr1 7602234 7602528 -235061825 - AluSc SINE Alu -15 294 1 1931 103 3 125 chr1 7602528 7602660 -235061693 - AluSx SINE Alu -151 151 5 182 200 33 17 chr1 7603074 7603134 -235061219 + L2 LINE L2 2912 2972 -342 2358 90 0 0 chr1 7603398 7603697 -235060656 - AluSx SINE Alu -13 299 1 1811 167 0 0 chr1 7604613 7604900 -235059453 + AluJb SINE Alu 1 287 -25 865 207 177 10 chr1 7604910 7605177 -235059176 + L1ME3A LINE L1 5852 6161 -9 348 24 0 0 chr1 7605466 7605507 -235058846 + (CA)n Simple_repeat Simple_repeat 2 42 0 1355 192 77 133 chr1 7605924 7606053 -235058300 - MLT1C LTR MaLR 0 467 332 1317 162 178 0 chr1 7606053 7606306 -235058047 - AluJo SINE Alu -14 298 1 1355 192 77 133 chr1 7606306 7606578 -235057775 - MLT1C LTR MaLR -135 332 97 1575 195 6 31 chr1 7606578 7606896 -235057457 - AluJo SINE Alu -2 310 1 1355 192 77 133 chr1 7606896 7606988 -235057365 - MLT1C LTR MaLR -370 97 1 463 262 154 35 chr1 7607469 7607633 -235056720 + MER5A DNA MER1_type 2 188 -1 267 265 167 61 chr1 7608005 7608137 -235056216 - MIR SINE MIR -54 208 63 663 188 0 0 chr1 7608350 7608451 -235055902 + FLAM_A SINE Alu 1 101 -41 325 264 97 21 chr1 7609922 7610066 -235054287 + L2 LINE L2 852 1006 -2308 262 295 115 0 chr1 7610099 7610177 -235054176 + L2 LINE L2 3202 3288 -25 431 214 111 0 chr1 7610834 7610951 -235053402 + MIR SINE MIR 111 240 -22 29 0 0 0 chr1 7611050 7611079 -235053274 + AT_rich Low_complexity Low_complexity 1 29 0 960 188 0 12 chr1 7612967 7613137 -235051216 - AluJb SINE Alu -9 303 136 2229 73 59 0 chr1 7614070 7614359 -235049994 + AluY SINE Alu 1 306 -5 1278 195 130 38 chr1 7614640 7615097 -235049256 + Charlie4a DNA MER1_type 3 493 -15 27 0 0 0 chr1 7616164 7616191 -235048162 + AT_rich Low_complexity Low_complexity 1 27 0 726 223 60 107 chr1 7616327 7616568 -235047785 - MLT1J LTR MaLR -220 291 40 207 69 0 0 chr1 7616568 7616597 -235047756 + (TTA)n Simple_repeat Simple_repeat 2 30 0 978 173 13 0 chr1 7616599 7616755 -235047598 - FRAM SINE Alu -8 158 1 726 223 60 107 chr1 7616755 7616810 -235047543 - MLT1J LTR MaLR -472 39 6 2150 96 7 0 chr1 7616855 7617204 -235047149 + AluSp SINE Alu 1 351 0 317 299 110 16 chr1 7617222 7617349 -235047004 + L2 LINE L2 3127 3265 -7 2381 76 0 0 chr1 7618107 7618396 -235045957 + AluY SINE Alu 1 289 -22 1740 173 7 7 chr1 7619191 7619497 -235044856 - AluJb SINE Alu -6 306 1 300 137 0 0 chr1 7619664 7619715 -235044638 + (TG)n Simple_repeat Simple_repeat 2 52 0 1607 183 11 21 chr1 7619719 7620004 -235044349 - AluJo SINE Alu -30 282 1 819 195 6 30 chr1 7621724 7621888 -235042465 - FRAM SINE Alu -16 160 1 709 183 0 51 chr1 7622361 7622378 -235041975 - FRAM SINE Alu -150 162 146 288 77 0 0 chr1 7622378 7622417 -235041936 + (TATG)n Simple_repeat Simple_repeat 1 39 0 709 183 0 51 chr1 7622417 7622536 -235041817 - FRAM SINE Alu -166 146 33 1689 101 36 8 chr1 7625528 7625775 -235038578 - AluSx SINE Alu -15 297 44 26 0 0 0 chr1 7625775 7625801 -235038552 + AT_rich Low_complexity Low_complexity 1 26 0 3416 86 52 7 chr1 7626259 7626724 -235037629 - LTR19A LTR ERV1 0 486 1 810 172 0 0 chr1 7627538 7627660 -235036693 + FLAM_C SINE Alu 2 123 -20 559 157 0 0 chr1 7627885 7627968 -235036385 + AluJ/FLAM SINE Alu 2 84 -228 216 0 0 0 chr1 7627978 7628002 -235036351 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 180 250 150 0 chr1 7628426 7628486 -235035867 + MIR SINE MIR 82 150 -112 1969 130 0 14 chr1 7629689 7629973 -235034380 - AluSx SINE Alu -27 285 6 225 0 0 0 chr1 7630631 7630656 -235033697 + (T)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr1 7630818 7630846 -235033507 + AT_rich Low_complexity Low_complexity 1 28 0 392 240 10 20 chr1 7631930 7632030 -235032323 - MER94 DNA DNA -34 100 2 199 354 46 39 chr1 7633124 7633254 -235031099 - L2 LINE L2 -9 3263 3133 411 269 80 45 chr1 7634723 7634924 -235029429 + MIR SINE MIR 16 223 -39 222 244 35 58 chr1 7634981 7635067 -235029286 + L2 LINE L2 3229 3312 -1 2151 100 10 3 chr1 7635782 7636072 -235028281 - AluSq SINE Alu -13 300 9 23 33 0 0 chr1 7636850 7636880 -235027473 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr1 7637338 7637365 -235026988 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 101 0 0 chr1 7640527 7640606 -235023747 + AT_rich Low_complexity Low_complexity 1 79 0 1932 165 0 0 chr1 7641612 7641921 -235022432 - AluSx SINE Alu -3 309 1 2026 127 3 7 chr1 7641928 7642228 -235022125 - AluY SINE Alu -10 301 3 584 274 11 22 chr1 7642311 7642490 -235021863 + MIR SINE MIR 85 261 -1 2248 93 3 22 chr1 7642523 7642834 -235021519 - AluSg SINE Alu -5 305 1 1167 178 5 10 chr1 7643075 7643283 -235021070 + AluJb SINE Alu 3 209 -103 21 36 0 0 chr1 7643393 7643421 -235020932 + AT_rich Low_complexity Low_complexity 1 28 0 2230 121 3 0 chr1 7643900 7644206 -235020147 - AluSx SINE Alu -5 307 1 1036 90 23 0 chr1 7644206 7644339 -235020014 - AluSq/x SINE Alu -177 136 1 1530 227 20 7 chr1 7644623 7644918 -235019435 - AluJb SINE Alu -3 299 1 1296 166 3 124 chr1 7644955 7645118 -235019235 + AluSp SINE Alu 1 99 -214 2296 113 0 0 chr1 7645118 7645418 -235018935 + AluSx SINE Alu 1 300 -12 1296 166 3 124 chr1 7645418 7645609 -235018744 + AluSp SINE Alu 99 312 -1 1758 173 3 10 chr1 7645763 7646064 -235018289 - AluJb SINE Alu -13 299 1 1405 189 111 4 chr1 7647026 7647296 -235017057 + AluJo SINE Alu 1 299 -13 2151 100 10 3 chr1 7648111 7648401 -235015952 - AluSq SINE Alu -13 300 9 23 33 0 0 chr1 7649179 7649209 -235015144 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr1 7649667 7649694 -235014659 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 101 0 0 chr1 7652856 7652935 -235011418 + AT_rich Low_complexity Low_complexity 1 79 0 1932 165 0 0 chr1 7653941 7654250 -235010103 - AluSx SINE Alu -3 309 1 2026 127 3 7 chr1 7654257 7654557 -235009796 - AluY SINE Alu -10 301 3 584 274 11 22 chr1 7654640 7654819 -235009534 + MIR SINE MIR 85 261 -1 2248 93 3 22 chr1 7654852 7655163 -235009190 - AluSg SINE Alu -5 305 1 1167 178 5 10 chr1 7655404 7655612 -235008741 + AluJb SINE Alu 3 209 -103 21 36 0 0 chr1 7655722 7655750 -235008603 + AT_rich Low_complexity Low_complexity 1 28 0 2230 121 3 0 chr1 7656229 7656535 -235007818 - AluSx SINE Alu -5 307 1 1026 98 23 0 chr1 7656535 7656668 -235007685 - AluSq/x SINE Alu -177 136 1 1277 206 4 8 chr1 7656951 7657203 -235007150 - AluJo SINE Alu -13 299 49 709 353 70 26 chr1 7657203 7657930 -235006423 + L2 LINE L2 2475 3234 -38 303 153 141 59 chr1 7658244 7658329 -235006024 - MIR SINE MIR 0 262 171 550 311 34 0 chr1 7658432 7658609 -235005744 - MIR SINE MIR -78 184 2 2134 111 0 7 chr1 7659923 7660231 -235004122 + AluSx SINE Alu 1 306 0 920 191 16 31 chr1 7660380 7660574 -235003779 - MER20 DNA MER1_type 0 219 29 2285 93 0 3 chr1 7660692 7660982 -235003371 - AluSg SINE Alu -21 289 1 604 186 7 57 chr1 7660982 7661122 -235003231 + MER58B DNA MER1_type 204 336 -5 242 264 97 0 chr1 7661713 7661785 -235002568 + MIR SINE MIR 38 116 -92 2368 101 0 0 chr1 7661794 7662102 -235002251 - AluSx SINE Alu -4 308 1 657 216 157 33 chr1 7662105 7662258 -235002095 - AluSg/x SINE Alu -19 293 122 341 219 0 14 chr1 7662288 7662361 -235001992 - MER5A DNA MER1_type -1 188 117 2692 235 50 44 chr1 7662373 7663234 -235001119 + L1MCb LINE L1 13 878 -5167 264 30 0 0 chr1 7663234 7663267 -235001086 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2257 92 3 3 chr1 7663269 7663562 -235000791 - AluY SINE Alu -18 293 1 2938 162 95 67 chr1 7663566 7664200 -235000153 + L1MC2 LINE L1 5595 6210 -134 195 100 0 0 chr1 7664200 7664230 -235000123 + (TG)n Simple_repeat Simple_repeat 1 30 0 2938 162 95 67 chr1 7664230 7664265 -235000088 + L1MC2 LINE L1 6210 6243 -101 2701 38 0 13 chr1 7664265 7664580 -234999773 - AluY SINE Alu 0 311 1 2938 162 95 67 chr1 7664580 7664626 -234999727 + L1MC2 LINE L1 6243 6331 -13 475 262 74 0 chr1 7664652 7664774 -234999579 - MER5A DNA MER1_type -58 131 1 1539 187 257 22 chr1 7664835 7665273 -234999080 + MLT1F LTR MaLR 1 502 -3 1878 93 43 25 chr1 7665288 7665593 -234998760 + AluSq SINE Alu 1 310 0 555 258 74 0 chr1 7666020 7666183 -234998170 + MIR SINE MIR 87 261 -1 188 337 171 21 chr1 7666185 7666378 -234997975 + L2 LINE L2 2838 3059 -213 23 0 0 0 chr1 7666416 7666439 -234997914 + AT_rich Low_complexity Low_complexity 1 23 0 271 270 0 60 chr1 7666467 7666567 -234997786 - MIR SINE MIR 0 262 169 22 0 0 0 chr1 7666759 7666781 -234997572 + AT_rich Low_complexity Low_complexity 1 22 0 513 265 129 34 chr1 7666813 7667037 -234997316 - L1MC4a LINE L1 -1791 6017 5757 2309 122 135 3 chr1 7667037 7667415 -234996938 + MSTA LTR MaLR 1 428 0 513 265 129 34 chr1 7667415 7667484 -234996869 - L1MC4a LINE L1 -2051 5757 5696 2344 70 0 3 chr1 7667648 7667966 -234996387 - AluY SINE Alu 0 317 1 207 0 0 0 chr1 7668312 7668335 -234996018 + (A)n Simple_repeat Simple_repeat 1 23 0 901 118 0 59 chr1 7669043 7669195 -234995158 - FLAM_C SINE Alu 0 143 1 830 120 0 0 chr1 7669730 7669855 -234994498 - AluSg/x SINE Alu 0 312 188 669 124 0 0 chr1 7669855 7669944 -234994409 - AluJ/FLAM SINE Alu -222 90 2 183 304 51 13 chr1 7670017 7670096 -234994257 + L2 LINE L2 3169 3250 -22 382 200 35 12 chr1 7670100 7670185 -234994168 - MIR SINE MIR -12 250 164 615 278 124 51 chr1 7670497 7670925 -234993428 - LTR41 LTR ERVL -6 767 309 980 166 29 6 chr1 7670962 7671137 -234993216 - LTR41 LTR ERVL -594 179 1 250 280 220 0 chr1 7671150 7671268 -234993085 + L2 LINE L2 2427 2570 -744 45 19 0 0 chr1 7671300 7671352 -234993001 + AT_rich Low_complexity Low_complexity 1 52 0 221 234 8 153 chr1 7671395 7671519 -234992834 + L2 LINE L2 2916 3021 -251 5011 151 61 15 chr1 7671637 7672684 -234991669 - Tigger3b DNA MER2_type -57 1174 3 263 271 59 93 chr1 7672718 7672836 -234991517 + L2 LINE L2 3154 3267 -5 2215 135 10 56 chr1 7672842 7673235 -234991118 + THE1C LTR MaLR 1 375 0 1718 119 0 140 chr1 7674010 7674346 -234990007 + AluJb SINE Alu 13 301 -11 1030 176 0 12 chr1 7674573 7674743 -234989610 + AluJo SINE Alu 1 168 -144 1621 134 94 29 chr1 7674745 7675020 -234989333 - AluSx SINE Alu -19 293 1 783 255 98 57 chr1 7675144 7675512 -234988841 + L2 LINE L2 2930 3312 -1 2119 169 42 0 chr1 7676517 7676877 -234987476 + THE1C LTR MaLR 1 375 0 1657 189 17 0 chr1 7677247 7677543 -234986810 + AluJo SINE Alu 1 301 -11 276 340 0 10 chr1 7677829 7677932 -234986421 + MLT1K LTR MaLR 185 286 -302 988 157 45 0 chr1 7677935 7678113 -234986240 - MER47A DNA MER2_type -177 189 4 189 194 75 32 chr1 7678196 7678289 -234986064 - L2 LINE L2 -358 2914 2818 349 143 13 13 chr1 7678307 7678384 -234985969 + GA-rich Low_complexity Low_complexity 1 77 0 2356 59 35 0 chr1 7678472 7678760 -234985593 - AluY SINE Alu -13 298 1 2158 100 0 21 chr1 7679246 7679537 -234984816 - AluSx SINE Alu -27 285 1 430 331 24 24 chr1 7679573 7679742 -234984611 - MIR SINE MIR -58 204 36 647 224 22 92 chr1 7680431 7680659 -234983694 - MIR SINE MIR 0 262 51 487 311 104 65 chr1 7680730 7681329 -234983024 - L2 LINE L2 0 3313 2667 2008 152 3 0 chr1 7681329 7681632 -234982721 + AluSx SINE Alu 1 304 -8 487 311 104 65 chr1 7681632 7681686 -234982667 - L2 LINE L2 -646 2667 2617 221 231 115 0 chr1 7681688 7681740 -234982613 + L2 LINE L2 3256 3313 0 281 282 13 0 chr1 7682736 7682814 -234981539 - MIR SINE MIR -21 241 163 544 197 249 28 chr1 7683441 7683654 -234980699 - MIR SINE MIR 0 262 3 21 0 0 0 chr1 7684468 7684489 -234979864 + AT_rich Low_complexity Low_complexity 1 21 0 493 196 181 7 chr1 7686892 7687030 -234977323 - MER69A DNA AcHobo -15 162 1 946 134 15 0 chr1 7687242 7687376 -234976977 + AluJo SINE Alu 1 136 -176 807 191 7 15 chr1 7687473 7687609 -234976744 + AluJo SINE Alu 1 135 -177 2219 113 10 3 chr1 7688269 7688571 -234975782 + AluSq SINE Alu 1 304 -9 2454 132 58 127 chr1 7689273 7689551 -234974802 + L1MA8 LINE L1 5711 6007 -284 1993 114 14 3 chr1 7689551 7689840 -234974513 - AluSg SINE Alu -18 292 1 1560 135 36 32 chr1 7689847 7690099 -234974254 - AluJo SINE Alu -11 301 49 2454 132 58 127 chr1 7690099 7690433 -234973920 + L1MA8 LINE L1 6013 6288 -3 692 154 9 0 chr1 7690482 7690592 -234973761 + FLAM_A SINE Alu 28 138 -4 351 0 0 0 chr1 7691298 7691337 -234973016 + (CA)n Simple_repeat Simple_repeat 2 40 0 2454 73 0 3 chr1 7691485 7691786 -234972567 - AluSq SINE Alu -13 300 1 259 167 0 0 chr1 7692077 7692125 -234972228 - Alu SINE Alu -4 298 251 696 332 23 0 chr1 7692314 7692570 -234971783 - MIR SINE MIR 0 262 1 2333 99 0 13 chr1 7693095 7693407 -234970946 + AluSp SINE Alu 1 308 -5 279 296 34 126 chr1 7693550 7693844 -234970509 + L2 LINE L2 3005 3271 -1 2033 138 0 7 chr1 7694810 7695115 -234969238 + AluSx SINE Alu 1 303 -9 2349 81 0 7 chr1 7695118 7695415 -234968938 + AluSc SINE Alu 1 295 -14 215 294 141 0 chr1 7696028 7696113 -234968240 - L2 LINE L2 -207 3065 2969 3947 181 48 19 chr1 7696180 7696986 -234967367 + L1MB8 LINE L1 5349 6178 0 2070 131 10 13 chr1 7696996 7697132 -234967221 + AluSq SINE Alu 1 136 -177 2321 89 0 0 chr1 7697132 7697423 -234966930 + AluSc SINE Alu 2 292 -17 2070 131 10 13 chr1 7697423 7697600 -234966753 + AluSq SINE Alu 136 313 0 2066 135 3 22 chr1 7697718 7698036 -234966317 + AluSx SINE Alu 1 312 0 186 243 103 96 chr1 7698593 7698729 -234965624 - L2 LINE L2 -1842 1472 1336 1745 183 10 16 chr1 7698780 7699092 -234965261 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 7699136 7699159 -234965194 + AT_rich Low_complexity Low_complexity 1 23 0 2000 110 0 27 chr1 7699159 7699459 -234964894 + AluSx SINE Alu 21 312 0 1034 213 56 0 chr1 7699899 7700096 -234964257 + MER3 DNA MER1_type 2 209 0 782 211 60 22 chr1 7700404 7700589 -234963764 + MER58A DNA MER1_type 1 192 -32 1618 167 24 17 chr1 7700950 7701238 -234963115 - AluJo SINE Alu -22 290 1 2249 118 0 3 chr1 7701244 7701550 -234962803 - AluSx SINE Alu -7 305 1 28 0 0 0 chr1 7701761 7701789 -234962564 + AT_rich Low_complexity Low_complexity 1 28 0 271 275 296 16 chr1 7701926 7702115 -234962238 + MIR SINE MIR 12 253 -9 756 323 33 25 chr1 7702148 7702541 -234961812 + L1MC4a LINE L1 5548 5943 -1865 2125 111 10 7 chr1 7702702 7702999 -234961354 + AluSx SINE Alu 1 298 -14 2482 74 0 0 chr1 7703089 7703400 -234960953 + AluY SINE Alu 1 311 0 276 189 63 21 chr1 7703524 7703619 -234960734 + L1ME4a LINE L1 5916 6014 -107 211 222 0 0 chr1 7703620 7703656 -234960697 + L2 LINE L2 3199 3234 -79 2088 127 3 16 chr1 7703953 7704261 -234960092 + AluSx SINE Alu 1 304 -8 1923 150 17 3 chr1 7704267 7704567 -234959786 + AluSq SINE Alu 1 304 -9 799 176 23 0 chr1 7704873 7705004 -234959349 + AluJb SINE Alu 2 135 -177 2168 108 0 0 chr1 7705004 7705292 -234959061 + AluSg SINE Alu 1 288 -22 2414 72 3 3 chr1 7705808 7706114 -234958239 - AluSp SINE Alu -7 306 1 2615 65 7 0 chr1 7706412 7706719 -234957634 - AluSc SINE Alu 0 309 1 1583 192 0 38 chr1 7706750 7707063 -234957290 + AluJo SINE Alu 1 301 -11 914 266 5 5 chr1 7707248 7707455 -234956898 - MIR SINE MIR -54 208 2 1744 183 3 0 chr1 7707762 7708057 -234956296 - AluSx SINE Alu -16 296 1 1789 138 6 55 chr1 7708171 7708497 -234955856 - AluJb SINE Alu -2 310 1 2430 70 3 7 chr1 7708994 7709295 -234955058 - AluY SINE Alu -11 300 1 239 281 123 9 chr1 7709407 7709521 -234954832 + MIR SINE MIR 74 200 -62 1513 169 4 0 chr1 7710018 7710260 -234954093 + AluJb SINE Alu 4 246 -66 1344 139 15 0 chr1 7710313 7710514 -234953839 - AluSg/x SINE Alu -15 297 94 289 81 0 0 chr1 7711077 7711114 -234953239 - Alu SINE Alu -261 41 5 1138 45 0 8 chr1 7711219 7711352 -234953001 + AluSg SINE Alu 3 134 -176 2166 104 10 3 chr1 7711352 7711650 -234952703 + AluSx SINE Alu 1 300 -12 372 257 0 0 chr1 7711650 7711720 -234952633 + L2 LINE L2 3197 3266 -47 1169 139 17 6 chr1 7711883 7712063 -234952290 + AluSx SINE Alu 1 182 -130 336 297 27 18 chr1 7712093 7712204 -234952149 + MIR SINE MIR 27 138 -70 1655 156 31 59 chr1 7712911 7713047 -234951306 + AluJo SINE Alu 1 139 -173 2162 116 0 7 chr1 7713047 7713341 -234951012 + AluSc SINE Alu 1 292 -17 1655 156 31 59 chr1 7713341 7713524 -234950829 + AluJo SINE Alu 139 311 -1 606 286 82 11 chr1 7713526 7713708 -234950645 + MIR SINE MIR 57 251 -11 2450 246 74 50 chr1 7713983 7714595 -234949758 + L2 LINE L2 1732 2328 -986 2170 122 0 0 chr1 7714595 7714891 -234949462 + AluSx SINE Alu 1 296 -16 2450 246 74 50 chr1 7714891 7715023 -234949330 + L2 LINE L2 2328 2455 -859 1776 180 0 3 chr1 7715023 7715312 -234949041 + AluJb SINE Alu 1 288 -24 2450 246 74 50 chr1 7715312 7715524 -234948829 + L2 LINE L2 2455 2712 -602 549 174 51 0 chr1 7715527 7715625 -234948728 + AluJo SINE Alu 34 136 -176 374 172 86 11 chr1 7715646 7715739 -234948614 + L2 LINE L2 2702 2801 -513 1033 159 30 25 chr1 7715871 7716072 -234948281 + MLT1C LTR MaLR 266 467 0 1127 272 72 59 chr1 7716072 7716528 -234947825 + L2 LINE L2 2848 3309 -4 2260 103 3 0 chr1 7717603 7717893 -234946460 - AluSq SINE Alu -22 291 1 240 279 54 23 chr1 7717960 7718089 -234946264 + L2 LINE L2 2538 2670 -644 884 280 94 21 chr1 7718928 7719339 -234945014 + L2 LINE L2 2664 3105 -208 2169 112 0 7 chr1 7719518 7719821 -234944532 + AluSx SINE Alu 1 301 -11 1559 118 0 0 chr1 7719870 7720081 -234944272 + AluJb SINE Alu 84 294 -18 24 53 0 0 chr1 7720261 7720299 -234944054 + AT_rich Low_complexity Low_complexity 1 38 0 2331 93 0 3 chr1 7720334 7720634 -234943719 - AluSg SINE Alu -11 299 1 268 334 100 55 chr1 7720699 7721028 -234943325 - L2 LINE L2 -13 3259 2916 938 126 0 15 chr1 7721134 7721269 -234943084 + AluJo SINE Alu 1 133 -169 38 0 0 0 chr1 7721269 7721307 -234943046 + AT_rich Low_complexity Low_complexity 1 38 0 1970 142 0 7 chr1 7722585 7722867 -234941486 - AluSq SINE Alu -33 280 1 293 326 68 30 chr1 7723342 7723474 -234940879 + L2 LINE L2 3133 3269 -3 968 169 34 11 chr1 7723921 7724099 -234940254 + AluJo SINE Alu 131 312 0 2497 87 0 0 chr1 7724856 7725167 -234939186 + AluSx SINE Alu 1 311 -1 1912 119 11 14 chr1 7725782 7726060 -234938293 + AluSx SINE Alu 19 295 -17 1864 56 158 11 chr1 7726097 7726363 -234937990 + AluY SINE Alu 1 305 -6 695 197 0 0 chr1 7726596 7726745 -234937608 + FLAM_C SINE Alu 1 149 0 253 220 17 34 chr1 7726747 7726806 -234937547 + AluJ/F(R)AM SINE Alu 137 194 -108 997 201 0 16 chr1 7726828 7727012 -234937341 - AluJb SINE Alu -46 266 86 2182 94 7 0 chr1 7727028 7727305 -234937048 - AluSg SINE Alu -31 279 1 660 188 8 8 chr1 7727311 7727428 -234936925 - FLAM_A SINE Alu -10 132 16 2490 84 3 0 chr1 7727682 7727990 -234936363 + AluSp SINE Alu 1 309 -4 461 130 130 11 chr1 7728555 7728647 -234935706 - HY1 scRNA scRNA -2 110 8 1102 197 60 77 chr1 7729073 7729372 -234934981 + AluSx SINE Alu 2 295 -7 926 154 0 0 chr1 7729958 7730094 -234934259 + AluJo SINE Alu 1 136 -176 2135 111 0 19 chr1 7730094 7730410 -234933943 + AluSx SINE Alu 1 310 -2 2423 93 0 0 chr1 7730671 7730973 -234933380 - AluSx SINE Alu -10 302 1 2230 109 10 0 chr1 7730973 7731275 -234933078 - AluSq SINE Alu -8 305 1 32 0 0 0 chr1 7731502 7731534 -234932819 + AT_rich Low_complexity Low_complexity 1 32 0 1000 140 0 67 chr1 7731535 7731639 -234932714 + FRAM SINE Alu 1 83 -229 1455 58 85 58 chr1 7731639 7731777 -234932576 - MER30 DNA MER1_type 0 230 82 2297 104 0 19 chr1 7731777 7732095 -234932258 - AluSx SINE Alu 0 312 1 1455 58 85 58 chr1 7732095 7732180 -234932173 - MER30 DNA MER1_type -148 82 1 1000 140 0 67 chr1 7732180 7732254 -234932099 + FRAM SINE Alu 83 160 -16 270 173 49 25 chr1 7732269 7732350 -234932003 + L1MB7 LINE L1 6100 6182 -2 293 213 0 0 chr1 7732452 7732513 -234931840 + L1MC/D LINE L1 5376 5436 -2372 780 145 123 7 chr1 7732518 7732656 -234931697 + FRAM SINE Alu 1 154 -12 2110 118 7 0 chr1 7732665 7732952 -234931401 + AluSx SINE Alu 1 289 -23 2004 148 0 3 chr1 7732958 7733249 -234931104 + AluJb SINE Alu 1 290 -22 2372 94 3 0 chr1 7733252 7733549 -234930804 - AluSp SINE Alu -15 298 1 415 299 159 9 chr1 7733588 7733909 -234930444 + L1MC/D LINE L1 5443 5811 -1997 27 0 0 0 chr1 7734056 7734083 -234930270 + AT_rich Low_complexity Low_complexity 1 27 0 210 324 29 7 chr1 7734437 7734576 -234929777 + L2 LINE L2 2918 3059 -213 29 28 0 0 chr1 7735030 7735066 -234929287 + AT_rich Low_complexity Low_complexity 1 36 0 2191 97 27 10 chr1 7735175 7735473 -234928880 + AluSc SINE Alu 1 303 -6 1588 163 80 7 chr1 7735566 7735842 -234928511 - AluJb SINE Alu -16 296 1 1483 278 84 8 chr1 7736432 7736907 -234927446 + MLT1J LTR MaLR 1 511 0 1156 115 35 11 chr1 7736977 7737151 -234927202 - AluSg/x SINE Alu 0 310 133 1907 162 0 14 chr1 7737211 7737347 -234927006 + AluSq SINE Alu 1 137 -176 2089 135 3 3 chr1 7737347 7737658 -234926695 + AluSq SINE Alu 1 311 -2 1907 162 0 14 chr1 7737658 7737817 -234926536 + AluSq SINE Alu 137 292 -21 2352 110 3 0 chr1 7737822 7738131 -234926222 - AluSq SINE Alu -3 310 1 1741 124 51 7 chr1 7738227 7738521 -234925832 + AluSx SINE Alu 1 306 0 190 267 188 30 chr1 7738601 7738702 -234925651 - L2 LINE L2 0 3313 3197 1846 162 0 7 chr1 7739035 7739332 -234925021 - AluJo SINE Alu -17 295 1 975 168 0 23 chr1 7739976 7740149 -234924204 + AluJb SINE Alu 137 305 -7 864 209 37 37 chr1 7740423 7740638 -234923715 - MIR SINE MIR 0 262 48 2498 85 0 3 chr1 7740834 7741139 -234923214 + AluY SINE Alu 1 304 -7 432 229 100 53 chr1 7741521 7741691 -234922662 + MER104 DNA MER2_type 1 178 -2 2047 105 22 0 chr1 7741957 7742284 -234922069 - AluSx SINE Alu 0 333 1 42 0 0 19 chr1 7742289 7742310 -234922043 + AT_rich Low_complexity Low_complexity 1 21 -31 1896 167 0 3 chr1 7742310 7742597 -234921756 + AluJb SINE Alu 3 288 -24 42 0 0 19 chr1 7742597 7742628 -234921725 + AT_rich Low_complexity Low_complexity 21 52 0 200 200 25 0 chr1 7742875 7742915 -234921438 + (CAGG)n Simple_repeat Simple_repeat 3 43 0 1818 158 17 20 chr1 7743307 7743599 -234920754 + AluJo SINE Alu 1 291 -21 2168 122 3 0 chr1 7744348 7744634 -234919719 + AluSx SINE Alu 2 288 -24 2226 114 3 3 chr1 7745589 7745897 -234918456 - AluSx SINE Alu -4 308 1 327 85 0 0 chr1 7747812 7747859 -234916494 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 92 0 0 chr1 7749212 7749277 -234915076 + GC_rich Low_complexity Low_complexity 1 65 0 273 57 0 0 chr1 7749796 7749831 -234914522 + (T)n Simple_repeat Simple_repeat 1 35 0 30 45 0 0 chr1 7750017 7750061 -234914292 + GC_rich Low_complexity Low_complexity 1 44 0 2536 60 3 0 chr1 7750875 7751173 -234913180 - AluSp SINE Alu -14 299 1 1740 119 0 0 chr1 7751528 7751763 -234912590 - AluSg/x SINE Alu 0 312 78 259 256 106 81 chr1 7752138 7752231 -234912122 - MIR SINE MIR -13 249 149 2454 76 10 0 chr1 7752231 7752534 -234911819 - AluSp SINE Alu -7 306 1 259 256 106 81 chr1 7752534 7752600 -234911753 - MIR SINE MIR -113 149 86 24 32 0 0 chr1 7752962 7752993 -234911360 + AT_rich Low_complexity Low_complexity 1 31 0 1403 166 4 17 chr1 7752994 7753229 -234911124 + AluJb SINE Alu 67 298 -14 23 33 0 0 chr1 7753584 7753614 -234910739 + AT_rich Low_complexity Low_complexity 1 30 0 2294 99 3 0 chr1 7754259 7754553 -234909800 + AluSq SINE Alu 1 295 -18 261 57 0 0 chr1 7755372 7755407 -234908946 + (A)n Simple_repeat Simple_repeat 1 35 0 2298 93 3 3 chr1 7755589 7755890 -234908463 + AluSx SINE Alu 1 301 -11 750 138 32 0 chr1 7755939 7756062 -234908291 + L1MC2 LINE L1 5727 5853 -480 774 154 0 0 chr1 7756063 7756186 -234908167 + AluJb SINE Alu 2 124 -188 25 0 0 0 chr1 7756197 7756222 -234908131 + AT_rich Low_complexity Low_complexity 1 25 0 1382 144 20 89 chr1 7756222 7756514 -234907839 + L1MC2 LINE L1 5839 6110 -234 1050 110 6 37 chr1 7756515 7756678 -234907675 + FRAM SINE Alu 1 158 -18 2075 118 17 3 chr1 7756678 7756965 -234907388 + AluSx SINE Alu 1 291 -21 2479 68 0 7 chr1 7756967 7757277 -234907076 + AluSg1 SINE Alu 1 308 -1 952 177 48 0 chr1 7757277 7757463 -234906890 + L1MC2 LINE L1 6137 6331 -13 2117 78 7 68 chr1 7757463 7757770 -234906583 + AluSq SINE Alu 1 288 -25 1173 164 53 70 chr1 7758406 7758541 -234905812 - MER44D DNA MER2_type -1886 605 469 2325 101 0 19 chr1 7758541 7758857 -234905496 + AluSg SINE Alu 1 310 0 1173 164 53 70 chr1 7758857 7758900 -234905453 - MER44D DNA MER2_type -2022 469 427 1897 159 0 3 chr1 7758900 7759190 -234905163 + AluJb SINE Alu 5 293 -19 1173 164 53 70 chr1 7759190 7759216 -234905137 - MER44D DNA MER2_type -2064 427 402 1721 141 26 49 chr1 7759216 7759359 -234904994 + AluJo SINE Alu 1 146 -166 1917 126 3 18 chr1 7759359 7759664 -234904689 + AluSx SINE Alu 1 301 0 1721 141 26 49 chr1 7759664 7759824 -234904529 + AluJo SINE Alu 146 298 -14 1173 164 53 70 chr1 7759824 7759958 -234904395 - MER44D DNA MER2_type -2089 402 1 1936 144 10 0 chr1 7760015 7760307 -234904046 + AluSx SINE Alu 16 310 -2 1119 162 6 6 chr1 7760307 7760486 -234903867 + AluJb SINE Alu 134 312 0 2185 100 7 20 chr1 7760655 7760956 -234903397 + AluSx SINE Alu 1 297 -15 2346 66 0 3 chr1 7761065 7761352 -234903001 + AluY SINE Alu 18 303 -8 2077 275 43 41 chr1 7761499 7762183 -234902170 + L2 LINE L2 989 1677 -1637 2353 111 0 0 chr1 7762183 7762490 -234901863 + AluSq SINE Alu 1 307 -6 2077 275 43 41 chr1 7762490 7762706 -234901647 + L2 LINE L2 1677 1891 -1423 2019 100 28 21 chr1 7762716 7763007 -234901346 + AluSx SINE Alu 10 302 -10 873 144 16 124 chr1 7763420 7763571 -234900782 + L1MCa LINE L1 352 479 -5947 2234 111 3 0 chr1 7763571 7763868 -234900485 - AluSp SINE Alu -15 298 1 873 144 16 124 chr1 7763868 7763910 -234900443 + L1MCa LINE L1 479 524 -5902 666 158 61 0 chr1 7763910 7764024 -234900329 + MER7A DNA MER2_type 1 119 -227 850 184 6 28 chr1 7764026 7764205 -234900148 + AluJb SINE Alu 137 311 -1 1355 202 43 11 chr1 7764248 7764525 -234899828 + AluJb SINE Alu 17 302 -10 245 214 18 0 chr1 7764525 7764581 -234899772 + L1MCa LINE L1 1779 1835 -4591 2321 113 3 0 chr1 7764583 7764892 -234899461 - AluSx SINE Alu -2 310 1 198 0 0 0 chr1 7764898 7764920 -234899433 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1515 197 0 35 chr1 7764921 7765238 -234899115 + AluJb SINE Alu 3 309 0 1972 148 3 3 chr1 7765239 7765543 -234898810 + AluSx SINE Alu 2 305 -7 517 135 10 0 chr1 7765549 7765653 -234898700 + L1MCa LINE L1 1821 1925 -4501 2366 80 0 20 chr1 7765775 7766076 -234898277 + AluY SINE Alu 1 295 -16 1795 127 4 0 chr1 7766328 7766573 -234897780 - AluSx SINE Alu -66 246 1 2024 93 11 7 chr1 7766622 7766901 -234897452 - AluSg SINE Alu -30 280 1 938 179 28 6 chr1 7766904 7767083 -234897270 - AluJb SINE Alu -18 294 112 1632 149 7 53 chr1 7767090 7767224 -234897129 + AluJo SINE Alu 1 117 -195 2315 97 7 0 chr1 7767224 7767522 -234896831 + AluSq SINE Alu 1 300 -13 1632 149 7 53 chr1 7767522 7767668 -234896685 + AluJo SINE Alu 117 268 -44 2235 115 0 13 chr1 7767691 7768003 -234896350 - AluSq SINE Alu -5 308 1 2336 107 7 0 chr1 7768844 7769154 -234895199 + AluSx SINE Alu 1 312 0 229 211 39 0 chr1 7770834 7770886 -234893467 + AluJo SINE Alu 82 135 -167 1628 163 0 80 chr1 7770887 7771025 -234893328 + AluJb SINE Alu 1 148 -164 1906 135 10 10 chr1 7771025 7771313 -234893040 + AluSx SINE Alu 1 288 -24 1179 174 13 129 chr1 7771183 7771500 -234892853 + AluJo SINE Alu 21 300 -12 1628 163 0 80 chr1 7771313 7771500 -234892853 + AluJb SINE Alu 148 300 -12 1790 120 71 0 chr1 7771505 7771772 -234892581 + AluSx SINE Alu 21 306 -6 1667 309 49 48 chr1 7771818 7772040 -234892313 + L2 LINE L2 2086 2306 -1008 2479 98 17 3 chr1 7772040 7772399 -234891954 + THE1B LTR MaLR 1 364 0 1667 309 49 48 chr1 7772399 7772765 -234891588 + L2 LINE L2 2306 2678 -636 2255 102 7 3 chr1 7772765 7773059 -234891294 + AluSx SINE Alu 6 300 -12 1667 309 49 48 chr1 7773059 7773345 -234891008 + L2 LINE L2 2678 2962 -352 612 218 35 0 chr1 7773411 7773553 -234890800 + MLT1A1 LTR MaLR 1 147 -218 826 112 7 63 chr1 7773553 7773684 -234890669 + FRAM SINE Alu 1 30 -146 1093 101 35 0 chr1 7773684 7773853 -234890500 + L1PA8 LINE L1 5995 6169 -3 826 112 7 63 chr1 7773853 7773864 -234890489 + FRAM SINE Alu 30 40 0 1009 169 43 0 chr1 7773892 7774076 -234890277 + MLT1A1 LTR MaLR 170 361 -4 1698 74 0 0 chr1 7774079 7774282 -234890071 - AluY SINE Alu -10 301 99 661 67 11 0 chr1 7774335 7774425 -234889928 - AluY SINE Alu -219 92 2 2268 106 0 17 chr1 7774431 7774595 -234889758 - AluSx SINE Alu -16 296 138 2186 108 7 16 chr1 7774595 7774902 -234889451 - AluSg SINE Alu -6 304 1 2268 106 0 17 chr1 7774902 7775038 -234889315 - AluSx SINE Alu -174 138 1 1095 221 57 57 chr1 7775049 7775371 -234888982 + MLT1C LTR MaLR 77 401 -66 2219 122 0 3 chr1 7775371 7775682 -234888671 - AluSx SINE Alu -2 310 1 1095 221 57 57 chr1 7775682 7775748 -234888605 + MLT1C LTR MaLR 400 465 -2 967 132 11 6 chr1 7776023 7776197 -234888156 + CT-rich Low_complexity Low_complexity 1 175 0 2011 129 31 3 chr1 7776203 7776489 -234887864 - AluSx SINE Alu -18 294 1 278 190 17 0 chr1 7777318 7777376 -234886977 - MIR SINE MIR -137 125 67 1187 246 91 9 chr1 7777395 7777792 -234886561 + MLT1K LTR MaLR 2 479 -109 2055 119 39 0 chr1 7778731 7778894 -234885459 - AluSx SINE Alu -16 296 141 2165 120 3 10 chr1 7778894 7779193 -234885160 - AluSq SINE Alu -16 297 1 180 0 0 0 chr1 7779199 7779219 -234885134 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2055 119 39 0 chr1 7779219 7779333 -234885020 - AluSx SINE Alu -175 137 1 195 42 0 0 chr1 7779685 7779709 -234884644 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 2387 110 0 0 chr1 7780458 7780768 -234883585 + AluSx SINE Alu 1 310 -2 261 0 0 0 chr1 7781235 7781264 -234883089 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2208 110 0 35 chr1 7781718 7782035 -234882318 - AluSx SINE Alu -6 306 1 1351 186 121 53 chr1 7782090 7782375 -234881978 + L1M4 LINE L1 4873 5198 -948 1962 155 3 19 chr1 7782375 7782692 -234881661 + AluJo SINE Alu 1 312 0 1351 186 121 53 chr1 7782692 7782836 -234881517 + L1M4 LINE L1 5198 5331 -815 2339 105 0 3 chr1 7782836 7783140 -234881213 + AluSx SINE Alu 1 303 -9 1356 118 80 55 chr1 7783145 7783382 -234880971 + AluJo SINE Alu 55 297 -15 1959 173 20 32 chr1 7783384 7783420 -234880933 + L1M4 LINE L1 5333 5368 -816 1770 163 51 10 chr1 7783420 7783714 -234880639 + AluJb SINE Alu 1 306 -6 1959 173 20 32 chr1 7783714 7783833 -234880520 + L1M4 LINE L1 5368 5487 -697 2447 89 0 0 chr1 7783833 7784136 -234880217 + AluSx SINE Alu 1 303 -9 1959 173 20 32 chr1 7784136 7784418 -234879935 + L1M4 LINE L1 5487 5766 -418 920 140 15 0 chr1 7784425 7784561 -234879792 + FRAM SINE Alu 18 155 -21 387 0 0 0 chr1 7784581 7784624 -234879729 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 941 158 35 12 chr1 7784646 7784817 -234879536 - FRAM SINE Alu -1 175 1 441 268 116 0 chr1 7784939 7785103 -234879250 - L2 LINE L2 -26 3287 3105 2193 55 45 58 chr1 7785352 7785660 -234878693 + AluY SINE Alu 1 304 -7 1067 201 27 5 chr1 7785660 7785884 -234878469 + L1M3 LINE L1 5441 5669 -511 383 111 10 4 chr1 7785884 7786092 -234878261 + AluJo SINE Alu 1 298 -4 280 206 118 81 chr1 7786860 7786926 -234877427 - Charlie8 DNA MER1_type -2219 198 136 1399 175 68 51 chr1 7786926 7787069 -234877284 + AluJo SINE Alu 1 140 -172 2211 98 0 7 chr1 7787069 7787381 -234876972 + AluSg SINE Alu 1 310 0 1399 175 68 51 chr1 7787381 7787528 -234876825 + AluJo SINE Alu 140 297 -15 280 206 118 81 chr1 7787528 7787597 -234876756 - Charlie8 DNA MER1_type -2281 136 58 323 275 158 35 chr1 7787609 7787722 -234876631 + L1ME1 LINE L1 5970 6112 -54 2156 118 5 68 chr1 7787722 7787898 -234876455 + THE1C LTR MaLR 1 186 -189 2375 93 0 10 chr1 7787898 7788211 -234876142 - AluSx SINE Alu -1 311 2 2156 118 5 68 chr1 7788211 7788434 -234875919 + THE1C LTR MaLR 186 375 0 323 275 158 35 chr1 7788434 7788491 -234875862 + L1ME1 LINE L1 6112 6161 -5 2070 124 0 0 chr1 7788574 7788847 -234875506 - AluSx SINE Alu -19 293 21 205 279 13 63 chr1 7789009 7789088 -234875265 - MIR SINE MIR -108 154 80 723 188 85 6 chr1 7789428 7789593 -234874760 - MER5B DNA MER1_type 0 178 1 722 160 128 19 chr1 7789613 7789769 -234874584 - AluJo SINE Alu -20 292 120 2135 131 0 0 chr1 7789775 7790065 -234874288 + AluSx SINE Alu 1 290 -22 606 221 14 0 chr1 7790647 7790787 -234873566 + ERVL-C1 LTR ERVL 5615 5756 -8 516 208 95 135 chr1 7790789 7790955 -234873398 + MLT2C1 LTR ERVL 3 151 -246 2045 133 14 7 chr1 7790955 7791249 -234873104 - AluSx SINE Alu -16 296 1 516 208 95 135 chr1 7791249 7791409 -234872944 + MLT2C1 LTR ERVL 151 316 -81 853 206 13 0 chr1 7791424 7791579 -234872774 - AluJb SINE Alu -26 286 130 2061 128 7 14 chr1 7791764 7791934 -234872419 - AluSx SINE Alu -7 305 136 2397 95 0 0 chr1 7791934 7792230 -234872123 - AluSg SINE Alu -14 296 1 2061 128 7 14 chr1 7792230 7792355 -234871998 - AluSx SINE Alu -176 136 12 189 0 0 0 chr1 7793934 7793955 -234870398 + (A)n Simple_repeat Simple_repeat 1 21 0 1626 114 63 20 chr1 7793963 7794218 -234870135 + AluSx SINE Alu 35 300 -12 600 135 0 0 chr1 7794239 7794335 -234870018 + FRAM SINE Alu 73 168 -8 619 116 0 0 chr1 7795689 7795775 -234868578 - FLAM_C SINE Alu -37 106 21 1452 194 11 29 chr1 7796381 7796659 -234867694 - AluJo SINE Alu -39 273 1 463 271 97 7 chr1 7796808 7796952 -234867401 + MIR SINE MIR 7 163 -99 844 80 36 0 chr1 7798046 7798158 -234866195 + AluSg/x SINE Alu 193 308 -2 677 164 0 62 chr1 7798730 7798858 -234865495 - FLAM_A SINE Alu -12 121 2 354 235 44 88 chr1 7798923 7799059 -234865294 - MIR SINE MIR -71 191 62 1979 94 94 4 chr1 7799606 7799883 -234864470 - AluY SINE Alu -9 302 1 332 256 231 20 chr1 7800526 7800725 -234863628 - MARNA DNA Mariner -184 402 162 1603 167 42 48 chr1 7800730 7801041 -234863312 - AluJb SINE Alu -3 309 1 2271 123 0 0 chr1 7801612 7801913 -234862440 - AluSx SINE Alu -11 301 1 185 138 0 0 chr1 7804291 7804320 -234860033 - MER5A DNA MER1_type -33 156 128 230 254 0 0 chr1 7804381 7804440 -234859913 - Charlie5 DNA MER1_type -27 2585 2527 2187 119 3 0 chr1 7804441 7804734 -234859619 - AluSx SINE Alu -16 296 3 657 186 120 42 chr1 7805218 7805385 -234858968 + L1MC1 LINE L1 6137 6316 -17 2312 109 0 16 chr1 7806347 7806660 -234857693 + AluSx SINE Alu 4 311 -1 749 96 88 0 chr1 7807195 7807320 -234857033 - MER85 DNA T2_type -3 136 1 189 171 0 0 chr1 7807351 7807386 -234856967 + A-rich Low_complexity Low_complexity 1 35 0 703 114 0 61 chr1 7807842 7807974 -234856379 - FLAM_C SINE Alu -9 124 1 273 177 89 25 chr1 7808487 7808566 -234855787 - L1ME1 LINE L1 -117 6049 5966 1000 50 10 5 chr1 7808670 7808870 -234855483 + AluY SINE Alu 2 302 -9 1967 87 66 35 chr1 7808898 7809046 -234855307 - AluSq SINE Alu -13 300 158 1876 85 143 0 chr1 7809046 7809305 -234855048 - AluY SINE Alu -15 296 1 1967 87 66 35 chr1 7809305 7809445 -234854908 - AluSq SINE Alu -155 158 3 2156 60 19 82 chr1 7809819 7810137 -234854216 + AluSp SINE Alu 1 298 -15 2471 81 0 3 chr1 7813347 7813657 -234850696 + AluSg SINE Alu 2 310 0 1362 182 34 51 chr1 7813679 7813975 -234850378 + AluJo SINE Alu 3 293 -19 2142 108 29 32 chr1 7813978 7814292 -234850061 + AluSq SINE Alu 1 313 0 2322 110 3 0 chr1 7814302 7814603 -234849750 + AluSx SINE Alu 1 302 -10 2457 92 3 0 chr1 7814696 7815002 -234849351 - AluY SINE Alu -4 307 1 2196 112 0 16 chr1 7815025 7815328 -234849025 - AluSg SINE Alu -12 298 1 201 39 0 0 chr1 7815328 7815354 -234848999 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2008 128 0 3 chr1 7815354 7815636 -234848717 - AluSg SINE Alu -29 281 1 33 0 0 0 chr1 7815637 7815670 -234848683 + AT_rich Low_complexity Low_complexity 1 33 0 546 144 0 52 chr1 7815670 7815767 -234848586 - U6 snRNA snRNA -2 105 14 2374 90 3 0 chr1 7816220 7816520 -234847833 - AluSp SINE Alu -12 301 1 2238 117 3 7 chr1 7816777 7817084 -234847269 + AluSx SINE Alu 1 306 -6 2183 104 10 0 chr1 7817645 7817933 -234846420 + AluSq SINE Alu 1 291 -22 274 319 59 89 chr1 7818066 7818235 -234846118 + L3 LINE CR1 402 565 -1012 2083 133 10 10 chr1 7818272 7818574 -234845779 + AluSx SINE Alu 1 302 -10 1087 220 81 23 chr1 7818574 7818833 -234845520 + MLT1A1 LTR MaLR 76 349 -16 366 205 141 0 chr1 7818960 7819038 -234845315 + MER58A DNA MER1_type 1 89 -18 1240 148 9 32 chr1 7819038 7819254 -234845099 - AluJb SINE Alu -15 297 87 639 246 0 0 chr1 7819254 7819388 -234844965 + MER58A DNA MER1_type 87 220 -4 2239 130 0 0 chr1 7819645 7819953 -234844400 - AluSg SINE Alu -2 308 1 1768 172 14 7 chr1 7819953 7820244 -234844109 - AluJo SINE Alu -19 293 1 346 233 25 50 chr1 7820248 7820368 -234843985 - L2 LINE L2 -685 2629 2513 1758 183 3 3 chr1 7820372 7820667 -234843686 + AluJo SINE Alu 1 295 -17 2454 68 14 0 chr1 7820670 7820963 -234843390 + AluSq SINE Alu 1 297 -16 2593 62 7 0 chr1 7820965 7821273 -234843080 + AluY SINE Alu 1 310 -1 1696 191 10 16 chr1 7821311 7821615 -234842738 + AluJb SINE Alu 5 306 -6 354 294 34 14 chr1 7821747 7821893 -234842460 + L3 LINE CR1 1230 1378 -199 215 61 30 0 chr1 7822029 7822062 -234842291 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 143 24 0 chr1 7822062 7822104 -234842249 + (TA)n Simple_repeat Simple_repeat 2 44 0 246 49 0 0 chr1 7822534 7822575 -234841778 - Alu SINE Alu 0 308 268 180 0 0 0 chr1 7822575 7822595 -234841758 + (A)n Simple_repeat Simple_repeat 1 20 0 1513 88 5 0 chr1 7822605 7822809 -234841544 + MER51B LTR ERV1 48 252 -125 2388 92 0 7 chr1 7822814 7823119 -234841234 - AluY SINE Alu -8 303 1 1011 187 0 21 chr1 7823120 7823307 -234841046 + AluJb SINE Alu 115 297 -15 2501 60 7 3 chr1 7823317 7823615 -234840738 - AluSp SINE Alu -14 299 1 827 213 34 78 chr1 7823649 7823917 -234840436 - LTR8 LTR ERV1 -435 256 1 226 227 196 0 chr1 7824017 7824114 -234840239 + MER34 LTR ERV1 370 485 -57 581 251 70 32 chr1 7824272 7824459 -234839894 - L2 LINE L2 0 3313 3120 3549 102 33 38 chr1 7824462 7824988 -234839365 + LTR8 LTR ERV1 1 525 -166 2204 88 29 39 chr1 7824988 7825103 -234839250 + AluSg SINE Alu 1 116 -194 2534 43 33 0 chr1 7825103 7825404 -234838949 + AluY SINE Alu 1 311 0 2204 88 29 39 chr1 7825404 7825596 -234838757 + AluSg SINE Alu 116 305 -5 3549 102 33 38 chr1 7825596 7825650 -234838703 + LTR8 LTR ERV1 525 578 -113 311 143 0 0 chr1 7826852 7826908 -234837445 + LTR8 LTR ERV1 563 618 -73 206 170 0 21 chr1 7826912 7826959 -234837394 + T-rich Low_complexity Low_complexity 3 48 0 2085 143 7 0 chr1 7826962 7827262 -234837091 - AluSx SINE Alu -10 302 1 598 135 0 0 chr1 7827262 7827351 -234837002 + LTR8 LTR ERV1 603 691 0 21 36 0 0 chr1 7827531 7827559 -234836794 + AT_rich Low_complexity Low_complexity 1 28 0 976 87 0 8 chr1 7827581 7827708 -234836645 + AluSp/q SINE Alu 170 295 -18 2058 117 37 7 chr1 7827735 7828034 -234836319 + AluSc SINE Alu 1 308 -1 17779 75 5 7 chr1 7828118 7830549 -234833804 + HERV9 LTR ERV1 5972 8399 0 6166 66 45 21 chr1 7830549 7831356 -234832997 + LTR12 LTR ERV1 1 826 0 1486 129 160 4 chr1 7831359 7831615 -234832738 - AluJo SINE Alu -16 296 1 2145 136 3 0 chr1 7831646 7831954 -234832399 - AluSq SINE Alu -4 309 1 2081 119 0 20 chr1 7831957 7832260 -234832093 - AluSx SINE Alu -15 297 1 501 125 25 0 chr1 7832326 7832406 -234831947 - MER41B LTR ERV1 -221 414 333 1812 146 36 4 chr1 7832408 7832683 -234831670 + AluSx SINE Alu 1 284 -28 183 42 0 0 chr1 7832683 7832707 -234831646 + (CTAAA)n Simple_repeat Simple_repeat 2 25 0 1278 154 0 43 chr1 7832719 7832890 -234831463 - MER41B LTR ERV1 -282 353 193 2260 105 7 0 chr1 7832890 7833184 -234831169 - AluSg SINE Alu -14 296 1 1278 154 0 43 chr1 7833184 7833246 -234831107 - MER41B LTR ERV1 -442 193 130 2121 129 0 41 chr1 7833273 7833445 -234830908 - AluSx SINE Alu -8 304 126 576 0 0 0 chr1 7833445 7833509 -234830844 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2053 145 3 0 chr1 7833509 7833792 -234830561 - AluSq SINE Alu -29 284 1 2121 129 0 41 chr1 7833792 7833935 -234830418 - AluSx SINE Alu -184 128 1 1348 148 145 17 chr1 7833955 7834245 -234830108 + LTR47A LTR ERVL 124 450 -2 2301 105 0 0 chr1 7834261 7834557 -234829796 - AluSx SINE Alu -16 296 1 876 184 180 39 chr1 7834693 7834949 -234829404 + MER21A LTR ERV1 1 292 -639 * 1224 107 32 0 chr1 7834929 7835116 -234829237 - MER30 DNA MER1_type -37 193 1 * 3133 159 87 29 chr1 7835116 7835482 -234828871 + MER21A LTR ERV1 245 588 -343 2242 93 0 0 chr1 7835482 7835762 -234828591 + AluSx SINE Alu 1 280 -32 224 77 26 0 chr1 7835764 7835803 -234828550 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3133 159 87 29 chr1 7835803 7836074 -234828279 + MER21A LTR ERV1 588 922 -9 294 95 0 0 chr1 7836626 7836668 -234827685 + (TCTCC)n Simple_repeat Simple_repeat 4 45 0 1632 161 0 16 chr1 7836668 7836917 -234827436 - AluJb SINE Alu -33 279 35 351 273 104 44 chr1 7837050 7837233 -234827120 + L1MEd LINE L1 619 812 -5307 222 62 0 0 chr1 7837233 7837265 -234827088 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1945 108 71 0 chr1 7837265 7837533 -234826820 - AluSx SINE Alu -25 287 1 183 129 0 0 chr1 7837578 7837609 -234826744 + (TC)n Simple_repeat Simple_repeat 2 32 0 2296 121 0 3 chr1 7837611 7837924 -234826429 - AluSx SINE Alu 0 312 1 314 339 99 0 chr1 7838287 7838479 -234825874 + L1MEd LINE L1 617 827 -5292 2363 122 0 0 chr1 7838513 7838825 -234825528 - AluSx SINE Alu 0 312 1 2673 40 0 3 chr1 7838829 7839133 -234825220 - AluYa5 SINE Alu -7 304 2 2810 22 0 10 chr1 7839136 7839450 -234824903 - AluYa5 SINE Alu 0 311 1 924 145 0 0 chr1 7839453 7839584 -234824769 - AluJo/FLAM SINE Alu -181 131 1 1254 86 0 32 chr1 7840050 7840236 -234824117 - HERVK9 LTR ERVK -4111 1805 1626 * 4176 89 63 17 chr1 7840232 7840870 -234823483 - HERVK9 LTR ERVK -5249 667 1 1353 148 76 8 chr1 7840870 7841120 -234823233 - MER9 LTR ERVK 0 511 245 519 202 0 0 chr1 7841143 7841227 -234823126 - AluJ/FLAM SINE Alu -224 88 5 306 325 57 57 chr1 7841248 7841472 -234822881 + LTR16A LTR ERVL 145 368 -82 835 143 8 0 chr1 7841472 7841598 -234822755 - L1PB2 LINE L1 -3 6148 6022 306 325 57 57 chr1 7841598 7841611 -234822742 + LTR16A LTR ERVL 368 380 -70 2375 71 0 0 chr1 7841611 7841920 -234822433 - AluSc SINE Alu 0 309 1 306 325 57 57 chr1 7841920 7841978 -234822375 + LTR16A LTR ERVL 379 442 -8 388 303 0 0 chr1 7842165 7842274 -234822079 - L2 LINE L2 -481 2833 2725 1078 117 0 25 chr1 7842289 7842452 -234821901 - AluSg/x SINE Alu -17 293 135 628 260 235 6 chr1 7842525 7842887 -234821466 - L2 LINE L2 -703 2611 2167 1500 157 8 16 chr1 7843037 7843285 -234821068 + AluJb SINE Alu 53 298 -14 232 167 0 42 chr1 7843534 7843582 -234820771 + T-rich Low_complexity Low_complexity 2 47 0 191 61 30 0 chr1 7844146 7844179 -234820174 + (CAA)n Simple_repeat Simple_repeat 1 34 0 5859 23 0 0 chr1 7844413 7845029 -234819324 + SVA Other Other 770 1385 -1 380 92 184 0 chr1 7845030 7845106 -234819247 + MER41B LTR ERV1 464 553 -82 186 43 0 0 chr1 7845107 7845130 -234819223 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 7845249 7845584 -234818769 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 7845610 7845658 -234818695 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 7845658 7845794 -234818559 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 7846333 7846641 -234817712 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 7847116 7847411 -234816942 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 7848096 7848666 -234815687 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 7848673 7848966 -234815387 + AluSq SINE Alu 6 299 -14 2122 118 7 3 chr1 7848979 7849284 -234815069 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 7849289 7849588 -234814765 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 7849588 7849712 -234814641 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 7850033 7850168 -234814185 + AluSq/x SINE Alu 1 135 -177 2323 112 0 13 chr1 7850168 7850482 -234813871 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 7850785 7851107 -234813246 + AluJo SINE Alu 1 295 -7 2328 95 16 0 chr1 7851197 7851501 -234812852 + AluSq SINE Alu 1 309 -4 2193 105 0 0 chr1 7851832 7852109 -234812244 - AluSx SINE Alu -34 278 2 2183 137 0 0 chr1 7852113 7852413 -234811940 - AluSx SINE Alu -8 304 5 812 168 0 0 chr1 7852570 7852695 -234811658 - FLAM_A SINE Alu -8 125 1 2116 138 0 3 chr1 7852749 7853045 -234811308 + AluSx SINE Alu 1 295 -17 585 118 12 0 chr1 7853048 7853133 -234811220 + AluSx SINE Alu 2 87 -225 467 272 54 16 chr1 7853292 7853476 -234810877 + LTR21A LTR ERV1 300 490 -15 2531 179 43 14 chr1 7853477 7854034 -234810319 + HERVFH21 LTR ERV1 6 578 -5951 * 17789 188 20 23 chr1 7854025 7856309 -234808044 + HERVFH21 LTR ERV1 536 2831 -3698 1931 134 4 0 chr1 7856309 7856578 -234807775 - AluSg SINE Alu -40 270 1 17789 188 20 23 chr1 7856578 7858219 -234806134 + HERVFH21 LTR ERV1 2831 4476 -2053 2443 266 28 21 chr1 7858737 7859561 -234804792 + HERVFH21 LTR ERV1 5700 6529 0 484 261 56 17 chr1 7859729 7859909 -234804444 + LTR21A LTR ERV1 300 486 -19 1376 142 110 0 chr1 7859909 7860128 -234804225 + AluSx SINE Alu 70 312 0 2715 42 0 6 chr1 7860179 7860491 -234803862 - AluY SINE Alu -1 310 1 947 143 0 0 chr1 7860585 7860718 -234803635 + FLAM_A SINE Alu 1 133 0 185 309 0 0 chr1 7860759 7860814 -234803539 + L2 LINE L2 2486 2540 -774 622 282 81 69 chr1 7860861 7860934 -234803419 - MLT1L LTR MaLR 0 615 544 2390 105 0 0 chr1 7860934 7861240 -234803113 + AluSg1 SINE Alu 1 306 -3 622 282 81 69 chr1 7861240 7861485 -234802868 - MLT1L LTR MaLR -71 544 288 1979 140 0 45 chr1 7861485 7861654 -234802699 - AluJo SINE Alu -10 302 152 2002 131 46 0 chr1 7861654 7861937 -234802416 - AluSx SINE Alu -15 297 2 1979 140 0 45 chr1 7861937 7862081 -234802272 - AluJo SINE Alu -160 152 3 622 282 81 69 chr1 7862081 7862169 -234802184 - MLT1L LTR MaLR -327 288 203 247 295 0 0 chr1 7862136 7862197 -234802156 - MLT1J LTR MaLR -340 171 111 * 200 111 0 28 chr1 7862333 7862369 -234801984 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 336 302 31 0 chr1 7862369 7862498 -234801855 - L1M4 LINE L1 -2400 3746 3614 599 234 8 0 chr1 7862502 7862626 -234801727 - MER58B DNA MER1_type -6 335 211 523 340 87 4 chr1 7862672 7862913 -234801440 - L1M4 LINE L1 -2539 3607 3347 606 125 40 125 chr1 7862918 7862969 -234801384 - L1MB2 LINE L1 0 6171 6117 2290 104 0 0 chr1 7862969 7863268 -234801085 - AluSq SINE Alu -14 299 1 606 125 40 125 chr1 7863268 7863368 -234800985 - L1MB2 LINE L1 -54 6117 6033 2165 133 0 3 chr1 7863380 7863680 -234800673 - AluSx SINE Alu -13 299 1 1664 177 0 16 chr1 7863680 7863997 -234800356 - L1MB4 LINE L1 -43 6137 5826 2269 109 0 28 chr1 7864067 7864388 -234799965 - AluSx SINE Alu 0 312 1 389 20 20 0 chr1 7864389 7864439 -234799914 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 1898 130 0 60 chr1 7864439 7864739 -234799614 - AluSx SINE Alu -30 282 1 585 143 0 31 chr1 7864744 7864842 -234799511 - AluJo SINE Alu -176 136 42 252 147 0 0 chr1 7864912 7864955 -234799398 + Alu SINE Alu 1 36 -263 2122 224 69 39 chr1 7865058 7865310 -234799043 - L1ME3A LINE L1 -202 5968 5725 1910 157 21 0 chr1 7865310 7865597 -234798756 - AluJb SINE Alu -19 293 1 2122 224 69 39 chr1 7865597 7865811 -234798542 - L1ME3A LINE L1 -445 5725 5519 2494 104 11 16 chr1 7865811 7866177 -234798176 - THE1B LTR MaLR 0 364 1 2122 224 69 39 chr1 7866177 7866500 -234797853 - L1ME3A LINE L1 -651 5519 5157 662 160 48 40 chr1 7866501 7866626 -234797727 - FLAM_C SINE Alu -3 130 5 2491 86 0 0 chr1 7866673 7866976 -234797377 - AluY SINE Alu -8 303 1 2153 144 0 0 chr1 7867011 7867310 -234797043 - AluSx SINE Alu -13 299 1 2170 96 34 7 chr1 7867322 7867615 -234796738 - AluY SINE Alu -10 301 1 231 36 0 0 chr1 7867626 7867654 -234796699 + (A)n Simple_repeat Simple_repeat 1 28 0 1716 181 3 14 chr1 7867737 7868025 -234796328 + AluJb SINE Alu 1 285 -27 305 181 29 0 chr1 7868097 7868173 -234796180 - L1MC3 LINE L1 0 7785 7716 226 164 66 0 chr1 7868206 7868267 -234796086 - L1ME3A LINE L1 -1779 4367 4303 1826 175 21 0 chr1 7868336 7868622 -234795731 + AluJb SINE Alu 2 293 -19 2181 102 0 3 chr1 7868628 7868938 -234795415 + AluSg SINE Alu 1 309 0 950 177 48 0 chr1 7868939 7869125 -234795228 + L1MC2 LINE L1 6137 6331 -13 2130 78 7 68 chr1 7869125 7869432 -234794921 + AluSq SINE Alu 1 288 -25 669 133 74 0 chr1 7870069 7870204 -234794149 - Tigger7 DNA MER2_type -4 2483 2339 2080 89 0 22 chr1 7870204 7870473 -234793880 + AluSg SINE Alu 1 263 -47 258 105 0 0 chr1 7870573 7870611 -234793742 + (A)n Simple_repeat Simple_repeat 1 38 0 1399 128 5 0 chr1 7870965 7871161 -234793192 - AluSx SINE Alu -115 197 1 255 49 0 24 chr1 7871515 7871556 -234792797 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2013 118 29 0 chr1 7871556 7871829 -234792524 - AluSx SINE Alu -4 308 1 394 227 31 0 chr1 7871831 7871928 -234792425 + HERVL40 LTR ERVL 3519 3618 -1912 274 98 0 0 chr1 7871952 7871993 -234792360 - Alu SINE Alu -6 296 256 1940 129 0 48 chr1 7871954 7872116 -234792237 - AluJb SINE Alu -18 294 126 243 0 0 0 chr1 7872116 7872143 -234792210 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2130 121 4 0 chr1 7872143 7872424 -234791929 - AluSg SINE Alu -28 282 1 1940 129 0 48 chr1 7872424 7872569 -234791784 - AluJb SINE Alu -184 128 1 909 141 83 26 chr1 7872863 7873055 -234791298 + MLT1D LTR MaLR 1 203 -302 738 179 46 35 chr1 7873479 7873523 -234790830 + MER61D LTR ERV1 314 356 -145 4083 98 19 20 chr1 7873523 7874118 -234790235 - LTR61 LTR ERV1 0 595 2 738 179 46 35 chr1 7874118 7874256 -234790097 + MER61D LTR ERV1 356 483 -18 1305 152 26 4 chr1 7874297 7874528 -234789825 + MLT1D LTR MaLR 270 505 0 2587 83 0 0 chr1 7875650 7875963 -234788390 + AluSq SINE Alu 1 313 0 1399 128 5 0 chr1 7876328 7876524 -234787829 - AluSx SINE Alu -115 197 1 2361 110 0 0 chr1 7876887 7877197 -234787156 - AluSx SINE Alu -2 310 1 857 118 28 107 chr1 7877619 7877797 -234786556 + AluJb SINE Alu 149 312 0 223 244 282 0 chr1 7878874 7878952 -234785401 + MIR3 SINE MIR 62 161 -47 186 304 144 24 chr1 7878959 7879062 -234785291 - MIR SINE MIR -23 239 117 1930 153 36 0 chr1 7879062 7879363 -234784990 + AluJb SINE Alu 1 312 0 186 304 144 24 chr1 7879363 7879384 -234784969 - MIR SINE MIR -145 117 100 347 189 175 34 chr1 7879409 7879535 -234784818 - MIR SINE MIR -78 130 1 2234 113 20 0 chr1 7880804 7881105 -234783248 - AluSx SINE Alu -5 307 1 2374 110 0 0 chr1 7881567 7881877 -234782476 - AluSx SINE Alu -2 310 1 2176 101 14 10 chr1 7882624 7882921 -234781432 - AluSp SINE Alu -15 298 1 2435 87 0 0 chr1 7883461 7883759 -234780594 + AluSx SINE Alu 1 298 -14 2348 93 0 13 chr1 7884755 7885057 -234779296 - AluSx SINE Alu -14 298 1 294 376 99 3 chr1 7885121 7885298 -234779055 - MIR3 SINE MIR -65 143 2 1920 145 14 3 chr1 7885360 7885657 -234778696 + AluJb SINE Alu 1 300 -12 2470 102 0 0 chr1 7885707 7886020 -234778333 + AluSq SINE Alu 1 313 0 23 0 0 0 chr1 7886574 7886597 -234777756 + AT_rich Low_complexity Low_complexity 1 23 0 2035 150 0 0 chr1 7886600 7886893 -234777460 - AluSx SINE Alu -19 293 1 2195 124 0 0 chr1 7886919 7887210 -234777143 - AluSx SINE Alu -21 291 1 2277 102 0 0 chr1 7887437 7887730 -234776623 - AluSx SINE Alu -19 293 1 2201 136 94 26 chr1 7887731 7888115 -234776238 - L1MC1 LINE L1 -236 6097 5741 1652 169 25 18 chr1 7888115 7888393 -234775960 + AluJb SINE Alu 1 280 -32 348 24 0 0 chr1 7888393 7888434 -234775919 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 2201 136 94 26 chr1 7888434 7888504 -234775849 - L1MC1 LINE L1 -591 5742 5611 4009 104 3 28 chr1 7888504 7888947 -234775406 + MER41A LTR ERV1 1 428 -126 2034 131 24 0 chr1 7888947 7889238 -234775115 - AluSx SINE Alu -14 298 1 4009 104 3 28 chr1 7889238 7889362 -234774991 + MER41A LTR ERV1 428 554 0 475 253 20 0 chr1 7889362 7889508 -234774845 - L1M4 LINE L1 -1567 4579 4431 997 127 0 0 chr1 7889514 7889648 -234774705 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr1 7889653 7889676 -234774677 + AT_rich Low_complexity Low_complexity 1 23 0 299 239 125 11 chr1 7889734 7889822 -234774531 - MER5C DNA MER1_type -203 121 24 1932 150 7 3 chr1 7889870 7890157 -234774196 + AluJb SINE Alu 3 290 -22 2348 99 0 0 chr1 7890715 7891008 -234773345 + AluSx SINE Alu 2 294 -18 1850 138 29 42 chr1 7891151 7891462 -234772891 + AluSx SINE Alu 1 307 -5 2354 108 0 0 chr1 7892109 7892414 -234771939 - AluSx SINE Alu -7 305 1 1568 186 0 32 chr1 7892440 7892720 -234771633 + AluJo SINE Alu 1 271 -41 2318 106 3 0 chr1 7892938 7893239 -234771114 - AluSq SINE Alu -9 304 3 2376 109 3 0 chr1 7894084 7894387 -234769966 - AluSq SINE Alu -9 304 1 2324 113 3 0 chr1 7894423 7894724 -234769629 + AluSq SINE Alu 1 302 -11 2271 112 3 0 chr1 7894724 7895019 -234769334 + AluSx SINE Alu 1 297 -15 1419 243 82 54 chr1 7895023 7895517 -234768836 + L1M4c LINE L1 816 1295 -5268 423 0 0 0 chr1 7895517 7895564 -234768789 + (CA)n Simple_repeat Simple_repeat 2 48 0 1419 243 82 54 chr1 7895564 7896436 -234767917 + L1M4c LINE L1 1295 2385 -4178 2294 89 13 22 chr1 7896731 7897046 -234767307 + AluSx SINE Alu 1 312 0 1054 298 74 70 chr1 7897884 7898322 -234766031 + L2 LINE L2 779 1214 -2100 1817 164 10 7 chr1 7898322 7898614 -234765739 - AluJb SINE Alu -19 293 1 1054 298 74 70 chr1 7898614 7899010 -234765343 + L2 LINE L2 1214 1620 -1694 2213 129 3 3 chr1 7899010 7899319 -234765034 - AluSc SINE Alu 0 309 1 1054 298 74 70 chr1 7899319 7899466 -234764887 + L2 LINE L2 1620 1765 -1549 2185 128 0 0 chr1 7899735 7900039 -234764314 + AluSx SINE Alu 1 304 -8 2923 155 27 37 chr1 7900040 7900379 -234763974 - L1MB3 LINE L1 -37 6146 5805 2248 112 3 0 chr1 7900379 7900674 -234763679 + AluSx SINE Alu 1 296 -16 2923 155 27 37 chr1 7900674 7900878 -234763475 - L1MB3 LINE L1 -378 5805 5607 2359 82 26 7 chr1 7900878 7901183 -234763170 - AluSx SINE Alu -1 311 1 2923 155 27 37 chr1 7901183 7901237 -234763116 - L1MB3 LINE L1 -576 5607 5554 30 0 0 0 chr1 7901738 7901768 -234762585 + AT_rich Low_complexity Low_complexity 1 30 0 888 129 0 0 chr1 7901772 7901896 -234762457 - FLAM_C SINE Alu -19 124 1 297 324 176 5 chr1 7902069 7902273 -234762080 - MIR SINE MIR -11 251 13 2193 129 7 0 chr1 7902737 7903039 -234761314 - AluSx SINE Alu -8 304 1 1113 256 66 69 chr1 7903127 7903507 -234760846 + L1MEd LINE L1 572 952 -5177 2175 118 3 7 chr1 7903507 7903804 -234760549 + AluSq SINE Alu 1 296 -17 2301 104 0 3 chr1 7903808 7904107 -234760246 + AluSg SINE Alu 2 299 -11 1113 256 66 69 chr1 7904107 7904389 -234759964 + L1MEd LINE L1 955 1236 -4893 192 40 0 0 chr1 7904389 7904414 -234759939 + (TC)n Simple_repeat Simple_repeat 2 26 0 1113 256 66 69 chr1 7904414 7904701 -234759652 + L1MEd LINE L1 1236 1482 -4647 2036 123 23 10 chr1 7904701 7905009 -234759344 + AluSx SINE Alu 1 312 0 1113 256 66 69 chr1 7905009 7905039 -234759314 + L1MEd LINE L1 1482 1511 -4618 2118 124 27 0 chr1 7905275 7905574 -234758779 - AluSx SINE Alu -5 307 1 2255 114 3 0 chr1 7906085 7906384 -234757969 - AluSx SINE Alu -12 300 1 1934 163 0 10 chr1 7906823 7907124 -234757229 - AluJo SINE Alu -14 298 1 2286 81 0 40 chr1 7907166 7907488 -234756865 + AluY SINE Alu 3 311 0 2208 83 17 10 chr1 7907803 7908091 -234756262 - AluSx SINE Alu -22 290 1 922 101 20 0 chr1 7908470 7908618 -234755735 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1921 137 11 4 chr1 7908618 7908896 -234755457 - AluJb SINE Alu -32 280 1 2422 84 0 7 chr1 7910035 7910343 -234754010 - AluSc SINE Alu -3 306 1 2094 138 17 0 chr1 7910343 7910634 -234753719 - AluSx SINE Alu -16 296 1 943 178 11 11 chr1 7910978 7911152 -234753201 - FRAM SINE Alu -3 173 1 365 274 162 0 chr1 7911375 7911492 -234752861 - MIR SINE MIR -112 150 15 317 353 59 0 chr1 7911506 7911625 -234752728 - L2 LINE L2 -1 3271 3146 235 308 185 10 chr1 7911813 7912008 -234752345 - L2 LINE L2 -384 2930 2702 2275 72 11 7 chr1 7912191 7912543 -234751810 + AluSc SINE Alu 1 353 0 321 256 11 0 chr1 7912570 7912660 -234751693 + L1MC5 LINE L1 5711 5801 -2007 2154 102 17 7 chr1 7912686 7912979 -234751374 - AluSg SINE Alu -14 296 1 2697 48 0 0 chr1 7913125 7913436 -234750917 + AluY SINE Alu 1 311 0 1973 158 7 0 chr1 7913967 7914264 -234750089 + AluJb SINE Alu 1 299 -13 907 226 18 148 chr1 7914269 7914327 -234750026 + L1MC5 LINE L1 6530 6594 -1214 2255 148 0 0 chr1 7914327 7914645 -234749708 - 7SLRNA srpRNA srpRNA -2 318 1 907 226 18 148 chr1 7914645 7914763 -234749590 + L1MC5 LINE L1 6594 6726 -1082 2280 105 0 3 chr1 7914763 7915058 -234749295 - AluSx SINE Alu -18 294 1 907 226 18 148 chr1 7915058 7915155 -234749198 + L1MC5 LINE L1 6726 6834 -974 839 148 0 15 chr1 7915155 7915290 -234749063 + FLAM_C SINE Alu 1 133 0 907 226 18 148 chr1 7915290 7915637 -234748716 + L1MC5 LINE L1 6834 7001 -807 1062 231 162 35 chr1 7915656 7916033 -234748320 - MLT1D LTR MaLR 0 505 81 224 194 0 0 chr1 7916033 7916069 -234748284 + polypyrimidine Low_complexity Low_complexity 3 38 0 462 152 26 53 chr1 7916070 7916221 -234748132 + CT-rich Low_complexity Low_complexity 2 148 0 1556 171 16 49 chr1 7916246 7916551 -234747802 - AluJb SINE Alu -17 295 1 267 141 169 42 chr1 7916551 7916622 -234747731 - MLT1D LTR MaLR -418 87 8 266 200 11 89 chr1 7916657 7916747 -234747606 + L1MC5 LINE L1 7151 7233 -728 228 67 0 0 chr1 7916785 7916815 -234747538 + (CTATT)n Simple_repeat Simple_repeat 3 32 0 320 308 31 31 chr1 7916926 7917056 -234747297 + L2 LINE L2 3184 3313 0 917 285 88 9 chr1 7917064 7917568 -234746785 + L1ME2 LINE L1 5268 5829 -335 2520 71 0 10 chr1 7917597 7917908 -234746445 + AluSc SINE Alu 1 308 -1 1877 164 3 19 chr1 7917936 7918253 -234746100 + AluJb SINE Alu 1 312 0 1506 209 31 48 chr1 7918345 7918699 -234745654 + MER7A DNA MER2_type 1 346 0 1876 124 44 0 chr1 7918765 7919039 -234745314 + AluJb SINE Alu 12 297 -15 564 144 33 39 chr1 7919061 7919242 -234745111 + GA-rich Low_complexity Low_complexity 1 180 0 218 314 14 0 chr1 7919382 7919452 -234744901 + L2 LINE L2 2694 2764 -550 2346 95 7 0 chr1 7919517 7919812 -234744541 - AluSx SINE Alu -15 297 1 273 295 104 49 chr1 7919812 7920025 -234744328 + L2 LINE L2 2754 2981 -291 848 165 0 23 chr1 7920519 7920652 -234743701 + AluJo SINE Alu 5 134 -178 255 281 247 0 chr1 7920699 7920845 -234743508 - MIR SINE MIR -75 187 6 2016 139 3 0 chr1 7921227 7921525 -234742828 + AluJo SINE Alu 1 297 -15 1975 141 0 0 chr1 7921775 7922072 -234742281 - AluJo SINE Alu -13 299 3 2053 131 0 0 chr1 7922104 7922416 -234741937 + AluSx SINE Alu 1 312 0 271 227 0 15 chr1 7923032 7923098 -234741255 - MIR3 SINE MIR -31 177 113 1889 125 38 0 chr1 7924168 7924455 -234739898 + AluSx SINE Alu 1 298 -14 1864 127 30 17 chr1 7925089 7925389 -234738964 - AluJb SINE Alu -8 304 1 407 335 42 47 chr1 7925401 7925637 -234738716 + L1MEc LINE L1 2099 2333 -4063 1695 139 63 33 chr1 7925654 7925957 -234738396 + AluJo SINE Alu 1 312 0 1932 109 4 0 chr1 7925990 7926255 -234738098 - AluSx SINE Alu -46 266 1 550 317 27 57 chr1 7926585 7926954 -234737399 + L2 LINE L2 2331 2688 -626 1658 153 42 14 chr1 7926971 7927258 -234737095 - AluJo SINE Alu -17 295 1 391 49 49 0 chr1 7927261 7927322 -234737031 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 545 319 59 11 chr1 7927371 7927644 -234736709 - MLT1K LTR MaLR 0 588 303 2037 112 53 30 chr1 7927783 7928122 -234736231 - THE1B LTR MaLR -17 347 1 262 329 0 0 chr1 7928122 7928195 -234736158 + L1MEd LINE L1 446 518 -5601 358 323 51 15 chr1 7928198 7928393 -234735960 + L1MC5 LINE L1 7498 7699 -262 2000 118 0 7 chr1 7928400 7928697 -234735656 - AluSc SINE Alu -14 295 1 251 293 65 83 chr1 7929296 7929526 -234734827 - MIR SINE MIR -4 258 35 2169 125 0 0 chr1 7929529 7929841 -234734512 - AluSx SINE Alu 0 312 1 2280 78 3 0 chr1 7929937 7930233 -234734120 + AluY SINE Alu 1 297 -14 2146 97 7 0 chr1 7930234 7930523 -234733830 + AluSq SINE Alu 1 291 -22 1595 204 0 6 chr1 7930523 7930837 -234733516 - AluJo SINE Alu 0 312 1 2648 220 73 31 chr1 7930859 7931557 -234732796 - L1ME1 LINE L1 -36 6130 5394 2111 86 24 10 chr1 7931557 7931847 -234732506 - AluSq SINE Alu -19 294 1 2648 220 73 31 chr1 7931847 7931926 -234732427 - L1ME1 LINE L1 -772 5394 5320 869 189 0 0 chr1 7931927 7932108 -234732245 + FRAM SINE Alu 1 179 0 2052 206 57 66 chr1 7932114 7932167 -234732186 - L1ME1 LINE L1 -813 5333 5281 2247 87 10 0 chr1 7932167 7932467 -234731886 - AluSq SINE Alu -10 303 1 2052 206 57 66 chr1 7932467 7932891 -234731462 - L1ME1 LINE L1 -865 5281 4890 2194 111 0 3 chr1 7932891 7933198 -234731155 + AluSx SINE Alu 1 306 -6 2052 206 57 66 chr1 7933198 7933529 -234730824 - L1ME1 LINE L1 -1256 4890 4557 1479 220 12 30 chr1 7933527 7933931 -234730422 - L1ME1 LINE L1 -2313 3833 3437 * 938 78 117 0 chr1 7933940 7934068 -234730285 - AluSq/x SINE Alu -170 143 1 435 293 0 0 chr1 7934068 7934191 -234730162 - L1ME1 LINE L1 -2690 3456 3334 884 167 13 7 chr1 7934947 7935097 -234729256 + FRAM SINE Alu 1 151 -15 2283 112 0 0 chr1 7935108 7935420 -234728933 + AluSx SINE Alu 1 312 0 351 0 0 0 chr1 7935517 7935556 -234728797 + (TG)n Simple_repeat Simple_repeat 1 39 0 669 232 107 28 chr1 7935642 7935859 -234728494 + MLT1G LTR MaLR 360 503 -2 1973 135 14 0 chr1 7936191 7936488 -234727865 - AluJb SINE Alu -10 302 2 4944 164 15 38 chr1 7936591 7937568 -234726785 + LTR5 LTR ERVK 1 955 -14 2226 108 7 0 chr1 7938347 7938652 -234725701 + AluSx SINE Alu 1 307 -5 1412 163 118 11 chr1 7938851 7939121 -234725232 + AluJo SINE Alu 1 299 -13 433 158 95 120 chr1 7940117 7940275 -234724078 - MER106B DNA MER1_type -10 1049 896 1459 125 103 0 chr1 7940351 7940583 -234723770 + AluSx SINE Alu 57 312 0 1773 132 28 14 chr1 7941036 7941323 -234723030 - AluSx SINE Alu -21 291 1 250 234 0 0 chr1 7941984 7942031 -234722322 - L2 LINE L2 -1 3312 3266 180 282 0 99 chr1 7942415 7942486 -234721867 - MIR SINE MIR -34 228 165 1145 95 24 0 chr1 7942506 7942674 -234721679 - AluSg/x SINE Alu -8 304 133 245 269 30 0 chr1 7943033 7943100 -234721253 - L2 LINE L2 -551 2763 2695 2108 106 10 0 chr1 7943375 7943667 -234720686 - AluSx SINE Alu -17 295 1 1960 145 7 3 chr1 7944225 7944529 -234719824 - AluJb SINE Alu -7 305 1 438 318 63 16 chr1 7944596 7944785 -234719568 + MER20B DNA MER1_type 542 739 -44 2281 101 0 0 chr1 7945117 7945424 -234718929 - AluSq SINE Alu 0 313 7 2354 198 43 19 chr1 7945597 7946137 -234718216 + MER74A LTR ERVL 6 558 0 849 144 0 34 chr1 7946144 7946290 -234718063 + FLAM_C SINE Alu 1 141 -2 2245 104 7 0 chr1 7946513 7946822 -234717531 - AluSx SINE Alu -1 311 1 1957 147 0 10 chr1 7947651 7947964 -234716389 - AluSq SINE Alu -3 310 1 996 90 0 8 chr1 7947968 7948102 -234716251 - AluSq/x SINE Alu -179 133 1 340 312 102 5 chr1 7948531 7948717 -234715636 + MIR3 SINE MIR 2 205 -3 1667 172 26 23 chr1 7950493 7950795 -234713558 - AluJo SINE Alu -9 303 1 1737 140 0 14 chr1 7951095 7951374 -234712979 + AluJb SINE Alu 1 275 -37 582 183 0 0 chr1 7951374 7951489 -234712864 + GA-rich Low_complexity Low_complexity 4 118 0 2861 146 74 40 chr1 7951631 7951863 -234712490 + MER39B LTR ERV1 1 223 -430 1723 100 4 0 chr1 7951863 7952128 -234712225 + AluSx SINE Alu 53 318 0 2861 146 74 40 chr1 7952128 7952499 -234711854 + MER39B LTR ERV1 223 626 -27 407 221 58 0 chr1 7952501 7952605 -234711748 + L2 LINE L2 1328 1437 -1877 395 266 202 45 chr1 7952640 7952952 -234711401 + L2 LINE L2 1621 1981 -1333 911 143 0 0 chr1 7953672 7953798 -234710555 + FLAM_C SINE Alu 1 126 -7 1263 184 148 42 chr1 7954238 7954414 -234709939 + MLT1A2 LTR MaLR 2 158 -216 2159 122 0 0 chr1 7954414 7954725 -234709628 + AluSx SINE Alu 1 311 -1 1263 184 148 42 chr1 7954725 7954885 -234709468 + MLT1A2 LTR MaLR 158 374 0 547 221 10 171 chr1 7954888 7955186 -234709167 + L3 LINE CR1 1313 1562 -15 631 122 0 0 chr1 7955441 7955531 -234708822 - Alu SINE Alu -9 301 212 2146 105 114 21 chr1 7955531 7955864 -234708489 + THE1B LTR MaLR 1 364 0 1564 119 0 0 chr1 7955864 7956082 -234708271 - AluSx SINE Alu -94 218 1 267 315 62 53 chr1 7957367 7957600 -234706753 - MIR SINE MIR -6 256 29 2378 68 0 0 chr1 7958098 7958391 -234705962 + AluY SINE Alu 1 293 -18 794 135 23 23 chr1 7958400 7958533 -234705820 + FLAM_C SINE Alu 1 133 0 2058 114 6 29 chr1 7958602 7958918 -234705435 - AluSx SINE Alu -3 309 1 308 276 69 9 chr1 7958930 7959046 -234705307 + MIR SINE MIR 74 196 -66 300 306 171 5 chr1 7959204 7959420 -234704933 + L2 LINE L2 1918 2169 -1145 301 294 147 54 chr1 7959483 7959687 -234704666 + L1 LINE L1 2970 3192 -2954 820 135 0 15 chr1 7959820 7959953 -234704400 + FLAM_C SINE Alu 13 143 0 2289 97 0 25 chr1 7960027 7960347 -234704006 - AluSx SINE Alu 0 312 1 308 276 69 9 chr1 7960359 7960475 -234703878 + MIR SINE MIR 74 196 -66 383 282 171 5 chr1 7960634 7960850 -234703503 + L2 LINE L2 1918 2169 -1145 746 235 41 101 chr1 7961443 7961830 -234702523 - L2 LINE L2 0 3313 2950 1955 132 0 7 chr1 7962912 7963070 -234701283 - AluSx SINE Alu -18 294 137 2401 71 0 13 chr1 7963070 7963381 -234700972 - AluY SINE Alu -4 307 1 1955 132 0 7 chr1 7963381 7963518 -234700835 - AluSx SINE Alu -175 137 1 1420 119 21 4 chr1 7963523 7963758 -234700595 - L1PA14 LINE L1 0 6161 5923 1858 149 0 10 chr1 7964091 7964399 -234699954 + AluJb SINE Alu 1 305 -7 1179 184 0 26 chr1 7964524 7964758 -234699595 - AluJb SINE Alu 0 312 85 1489 152 17 0 chr1 7964833 7965063 -234699290 - AluSx SINE Alu -78 234 1 760 203 0 0 chr1 7965064 7965192 -234699161 - AluSq/x SINE Alu -184 129 2 1052 232 0 20 chr1 7965196 7965442 -234698911 - MLT1D-int LTR MaLR -1130 241 1 734 169 0 0 chr1 7965444 7965580 -234698773 - MLT1D LTR MaLR 0 505 370 * 949 159 19 0 chr1 7965575 7965732 -234698621 + MSTD LTR MaLR 237 396 0 1796 186 0 0 chr1 7965953 7966265 -234698088 + AluJb SINE Alu 1 312 0 30 0 0 0 chr1 7966708 7966738 -234697615 + AT_rich Low_complexity Low_complexity 1 30 0 554 155 216 0 chr1 7966743 7966840 -234697513 - FLAM_C SINE Alu -24 119 2 389 241 0 0 chr1 7967064 7967147 -234697206 - L2 LINE L2 0 3272 3190 3868 197 65 117 chr1 7967240 7968563 -234695790 - MER52A LTR ERV1 0 1278 25 268 53 26 0 chr1 7968563 7968601 -234695752 + MER52A LTR ERV1 1 39 -1716 323 256 5 85 chr1 7968683 7968776 -234695577 - Charlie7 DNA MER1_type 0 2612 2542 2208 80 7 0 chr1 7968776 7969065 -234695288 - AluY SINE Alu -20 291 1 323 256 5 85 chr1 7969065 7969170 -234695183 - Charlie7 DNA MER1_type -70 2542 2430 1279 157 59 77 chr1 7969404 7969717 -234694636 - AluJo SINE Alu 0 308 1 450 359 69 7 chr1 7969810 7970114 -234694239 + L2 LINE L2 2632 2954 -360 239 231 19 0 chr1 7970213 7970265 -234694088 + L2 LINE L2 3247 3299 -14 250 288 113 38 chr1 7970270 7970430 -234693923 + L2 LINE L2 2233 2404 -910 1034 165 54 66 chr1 7970929 7971171 -234693182 - L1MC3 LINE L1 -1152 6633 6395 581 295 43 5 chr1 7971252 7971459 -234692894 - MIR SINE MIR -28 234 20 2012 149 30 25 chr1 7971895 7972257 -234692096 - THE1B LTR MaLR 0 364 1 1085 224 19 0 chr1 7972369 7972574 -234691779 - AluJb SINE Alu -19 293 85 416 213 4 107 chr1 7972574 7972686 -234691667 - AluSp/q SINE Alu -53 250 173 2557 77 0 3 chr1 7972747 7973058 -234691295 + AluY SINE Alu 1 310 -1 454 267 82 0 chr1 7977122 7977268 -234687085 + MIR SINE MIR 84 241 -21 182 339 25 16 chr1 7977534 7977655 -234686698 + MIR SINE MIR 109 230 -32 654 186 16 31 chr1 7978463 7978592 -234685761 + AluSq/x SINE Alu 1 127 -185 248 233 26 9 chr1 7978592 7978708 -234685645 + (TG)n Simple_repeat Simple_repeat 1 118 0 300 299 35 11 chr1 7978728 7978815 -234685538 + L1MC4 LINE L1 6615 6703 -1339 414 173 18 9 chr1 7978815 7978925 -234685428 + (TG)n Simple_repeat Simple_repeat 1 111 0 241 146 0 0 chr1 7979155 7979196 -234685157 + LTR54 LTR ERV1 402 442 -68 181 252 57 65 chr1 7979638 7979761 -234684592 - L2 LINE L2 -2858 456 335 2558 60 0 3 chr1 7979912 7980210 -234684143 - AluSq SINE Alu -16 297 1 424 132 0 15 chr1 7980236 7980304 -234684049 + AluS SINE Alu 2 68 -250 405 255 100 89 chr1 7980406 7980677 -234683676 + L1MC5 LINE L1 7492 7765 -196 221 94 75 0 chr1 7980679 7980732 -234683621 + (TA)n Simple_repeat Simple_repeat 2 58 0 1949 166 0 3 chr1 7980733 7981029 -234683324 - AluJb SINE Alu -17 295 1 6689 45 40 11 chr1 7981159 7982031 -234682322 + MER11D LTR ERVK 1 897 0 1056 149 18 0 chr1 7982109 7982277 -234682076 - AluJb SINE Alu -5 307 137 451 322 47 0 chr1 7982622 7982771 -234681582 - L1ME LINE L1 -359 5762 5607 2192 107 24 3 chr1 7982867 7983158 -234681195 - AluSx SINE Alu -15 297 1 1704 138 99 18 chr1 7983795 7984078 -234680275 - AluJo SINE Alu -6 306 1 297 115 0 167 chr1 7986036 7986210 -234678143 + (CCCCG)n Simple_repeat Simple_repeat 2 146 0 1683 152 38 3 chr1 7986424 7986714 -234677639 + AluSg SINE Alu 2 301 -9 2930 98 33 15 chr1 7986837 7987294 -234677059 - MER4C LTR ERV1 0 465 1 1871 151 11 0 chr1 7987377 7987661 -234676692 + AluJo SINE Alu 22 308 -4 770 83 9 0 chr1 7987678 7987787 -234676566 + MER83 LTR ERV1 1 110 -338 1651 164 78 55 chr1 7987790 7988173 -234676180 + MER83 LTR ERV1 56 447 -1 2418 95 0 0 chr1 7988280 7988574 -234675779 - AluSq SINE Alu -18 295 2 2384 98 0 0 chr1 7988575 7988870 -234675483 - AluSx SINE Alu -17 295 1 877 145 7 0 chr1 7989258 7989396 -234674957 - LTR23 LTR ERV1 0 437 299 2037 71 12 0 chr1 7989401 7989653 -234674700 - AluSq SINE Alu -10 303 49 1850 171 3 0 chr1 7989754 7990046 -234674307 + AluJb SINE Alu 18 310 -2 1958 94 36 50 chr1 7990080 7990357 -234673996 + AluSq SINE Alu 3 275 -38 467 146 0 11 chr1 7990357 7990446 -234673907 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 3831 132 18 3 chr1 7990460 7991072 -234673281 - MER41B LTR ERV1 -14 621 1 922 133 0 0 chr1 7991072 7991215 -234673138 + L1PB2 LINE L1 6001 6143 -8 1190 185 93 0 chr1 7991227 7991486 -234672867 - LTR23 LTR ERV1 -154 283 1 2226 115 10 13 chr1 7992089 7992402 -234671951 - AluSx SINE Alu 0 312 1 4239 154 15 50 chr1 7992417 7993274 -234671079 - L1MB2 LINE L1 -17 6154 5328 510 111 0 0 chr1 7993366 7993447 -234670906 + LTR24C LTR ERV1 1 81 -554 411 54 0 0 chr1 7993494 7993550 -234670803 + LTR24C LTR ERV1 580 635 0 3599 147 26 36 chr1 7993557 7993577 -234670776 + L1MB5 LINE L1 5117 5136 -1038 1512 187 6 78 chr1 7993577 7993909 -234670444 + AluJb SINE Alu 5 312 0 3599 147 26 36 chr1 7993909 7993976 -234670377 + L1MB5 LINE L1 5136 5202 -972 596 202 73 0 chr1 7993976 7994100 -234670253 + FLAM_A SINE Alu 1 133 0 3599 147 26 36 chr1 7994100 7994415 -234669938 + L1MB5 LINE L1 5202 5519 -655 2049 163 0 0 chr1 7994415 7994715 -234669638 + AluSx SINE Alu 1 300 -12 3599 147 26 36 chr1 7994715 7995048 -234669305 + L1MB5 LINE L1 5519 5839 -335 757 183 0 0 chr1 7995048 7995179 -234669174 + FLAM_A SINE Alu 1 131 -2 3599 147 26 36 chr1 7995179 7995316 -234669037 + L1MB5 LINE L1 5839 5976 -198 754 194 127 18 chr1 7995470 7995701 -234668652 + L1MB5 LINE L1 5920 6174 0 232 179 0 0 chr1 7995711 7995750 -234668603 + Alu SINE Alu 250 288 -13 449 265 60 13 chr1 7995754 7995905 -234668448 - LTR37A LTR ERV1 -268 158 1 3057 116 27 51 chr1 7996015 7996156 -234668197 + MER41E LTR ERV1 1 144 -368 2246 117 0 7 chr1 7996156 7996463 -234667890 + AluSq SINE Alu 2 306 -7 3057 116 27 51 chr1 7996463 7996477 -234667876 + MER41E LTR ERV1 144 157 -355 2540 40 10 3 chr1 7996477 7996778 -234667575 + AluY SINE Alu 1 303 -8 3057 116 27 51 chr1 7996778 7997146 -234667207 + MER41E LTR ERV1 157 512 0 379 279 184 14 chr1 7997400 7997547 -234666806 + MER5A DNA MER1_type 18 189 0 2491 130 46 35 chr1 7997758 7998351 -234666002 - MER4E LTR ERV1 0 766 5 1209 136 45 112 chr1 7998816 7998990 -234665363 - LTR8A LTR ERV1 0 727 578 2168 150 0 6 chr1 7998990 7999304 -234665049 - AluSx SINE Alu 0 312 1 1209 136 45 112 chr1 7999304 7999413 -234664940 - LTR8A LTR ERV1 -149 578 463 1117 185 60 14 chr1 7999413 7999703 -234664650 + LTR19A LTR ERV1 1 357 -129 600 169 0 0 chr1 7999803 7999927 -234664426 + LTR19A-int LTR ERV1 1059 1182 -4404 46057 92 9 9 chr1 7999991 8000036 -234664317 + LTR19A-int LTR ERV1 1178 1222 -6497 2308 79 0 4 chr1 8000036 8000342 -234664011 + AluY SINE Alu 3 307 0 46057 92 9 9 chr1 8000342 8005869 -234658484 + LTR19A-int LTR ERV1 1222 6749 -970 2214 87 14 3 chr1 8005869 8006158 -234658195 + AluSp SINE Alu 5 296 -17 46057 92 9 9 chr1 8006158 8007129 -234657224 + LTR19A-int LTR ERV1 6749 7719 0 1875 151 158 28 chr1 8007129 8007559 -234656794 + LTR19A LTR ERV1 1 486 0 2261 150 57 50 chr1 8007559 8008019 -234656334 - LTR8A LTR ERV1 -264 463 1 2175 154 0 0 chr1 8008122 8008434 -234655919 + AluSx SINE Alu 1 312 0 225 114 29 0 chr1 8008444 8008479 -234655874 + U2 snRNA snRNA 3 38 -150 985 257 62 48 chr1 8008600 8008919 -234655434 + MER110A LTR ERV1 41 354 -114 2323 112 0 16 chr1 8008919 8009232 -234655121 + AluSg SINE Alu 1 308 -2 985 257 62 48 chr1 8009232 8009272 -234655081 + MER110A LTR ERV1 354 392 -76 3850 114 68 49 chr1 8009272 8009950 -234654403 + LTR8 LTR ERV1 1 691 0 985 257 62 48 chr1 8009950 8010009 -234654344 + MER110A LTR ERV1 392 466 -2 265 229 16 0 chr1 8010015 8010076 -234654277 + MER45 DNA AcHobo 1 62 -978 188 250 0 0 chr1 8010089 8010129 -234654224 + MIR SINE MIR 221 260 -2 627 130 52 0 chr1 8010947 8011062 -234653291 - AluSg/x SINE Alu -3 309 189 367 102 0 0 chr1 8011470 8011519 -234652834 + LTR8 LTR ERV1 643 691 0 184 256 47 0 chr1 8011565 8011608 -234652745 + MER5A DNA MER1_type 106 150 -39 28 0 0 0 chr1 8011859 8011887 -234652466 + AT_rich Low_complexity Low_complexity 1 28 0 1084 156 67 45 chr1 8012358 8012582 -234651771 + AluJb SINE Alu 79 307 -5 2219 112 0 26 chr1 8012601 8012905 -234651448 - AluSx SINE Alu -16 296 1 2235 110 7 10 chr1 8013677 8013985 -234650368 + AluSx SINE Alu 1 307 -5 997 147 13 6 chr1 8014463 8014620 -234649733 - AluJo/FRAM SINE Alu -11 301 144 251 154 0 19 chr1 8014622 8014674 -234649679 + Alu SINE Alu 252 302 0 2279 112 0 0 chr1 8014720 8015014 -234649339 - AluSq SINE Alu -19 294 1 2136 104 4 0 chr1 8016269 8016548 -234647805 + AluSx SINE Alu 1 280 -32 417 123 0 0 chr1 8016585 8016650 -234647703 + (CA)n Simple_repeat Simple_repeat 2 66 0 669 245 55 19 chr1 8017354 8017611 -234646742 + L2 LINE L2 2250 2515 -799 845 114 0 53 chr1 8017619 8017750 -234646603 - FLAM_C SINE Alu -14 129 6 410 273 140 49 chr1 8017753 8018233 -234646120 + L2 LINE L2 2520 3064 -249 2152 113 7 0 chr1 8018233 8018549 -234645804 + AluSx SINE Alu 1 318 0 410 273 140 49 chr1 8018549 8018707 -234645646 + L2 LINE L2 3064 3206 -107 958 166 0 0 chr1 8018908 8019053 -234645300 + AluJo SINE Alu 1 145 -167 1816 142 13 43 chr1 8019054 8019198 -234645155 + AluSx SINE Alu 1 133 -179 1934 149 7 10 chr1 8019198 8019494 -234644859 + AluSx SINE Alu 4 298 -14 1816 142 13 43 chr1 8019494 8019652 -234644701 + AluSx SINE Alu 133 294 -18 207 0 0 0 chr1 8019809 8019832 -234644521 + (TCC)n Simple_repeat Simple_repeat 1 23 0 698 134 188 54 chr1 8020198 8020347 -234644006 - AluJo/FRAM SINE Alu -10 302 134 2260 71 39 0 chr1 8020347 8020627 -234643726 - AluY SINE Alu -20 291 1 2436 99 0 0 chr1 8020631 8020934 -234643419 - AluSx SINE Alu -9 303 1 2065 153 0 7 chr1 8020938 8021246 -234643107 - AluSx SINE Alu -6 306 1 201 293 116 80 chr1 8021568 8021793 -234642560 + L2 LINE L2 3034 3266 -6 2386 107 0 0 chr1 8021793 8022103 -234642250 + AluSx SINE Alu 1 310 -2 248 321 76 23 chr1 8022559 8022690 -234641663 + MIR SINE MIR 103 240 -22 1760 116 0 0 chr1 8023314 8023539 -234640814 + AluSg/x SINE Alu 75 299 -13 500 309 15 13 chr1 8023723 8023991 -234640362 - MER115 DNA AcHobo -339 354 25 2419 92 0 0 chr1 8024011 8024305 -234640048 - AluSx SINE Alu -18 294 1 335 296 165 24 chr1 8024473 8024679 -234639674 + MIR SINE MIR 7 241 -21 2324 96 3 0 chr1 8025214 8025505 -234638848 + AluSx SINE Alu 1 292 -20 396 0 0 0 chr1 8025509 8025553 -234638800 + (CA)n Simple_repeat Simple_repeat 2 45 0 2039 117 10 29 chr1 8025591 8025898 -234638455 + AluSx SINE Alu 1 301 -11 1391 115 0 0 chr1 8026321 8026503 -234637850 + AluSg/x SINE Alu 129 310 0 1653 177 71 159 chr1 8026707 8027340 -234637013 + MER63C DNA MER1_type 1 531 -529 947 205 91 24 chr1 8027340 8027550 -234636803 + MER58A DNA MER1_type 1 224 0 1653 177 71 159 chr1 8027550 8027827 -234636526 + MER63C DNA MER1_type 531 831 -99 214 98 39 0 chr1 8027827 8027878 -234636475 + (TA)n Simple_repeat Simple_repeat 2 54 0 344 207 135 0 chr1 8027878 8027989 -234636364 + MER63 DNA MER1_type 801 926 -135 1794 77 65 35 chr1 8027994 8028255 -234636098 + AluSg SINE Alu 26 294 -16 1698 206 3 0 chr1 8028258 8028550 -234635803 - AluJo SINE Alu -19 293 1 403 162 15 0 chr1 8028584 8028652 -234635701 - FRAM/FAM SINE Alu -108 68 1 447 206 98 0 chr1 8028658 8028760 -234635593 + MER63 DNA MER1_type 946 1057 -3 2326 79 3 7 chr1 8028987 8029278 -234635075 + AluSx SINE Alu 1 290 -22 212 75 0 25 chr1 8029281 8029321 -234635032 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 236 259 19 0 chr1 8029418 8029472 -234634881 + L3 LINE CR1 880 934 -643 1174 187 61 25 chr1 8030088 8030263 -234634090 + MLT1B LTR MaLR 2 169 -221 1826 116 33 14 chr1 8030263 8030539 -234633814 + AluJb SINE Alu 1 281 -31 2283 113 0 3 chr1 8030539 8030840 -234633513 - AluSx SINE Alu -11 301 1 1174 187 61 25 chr1 8030840 8031084 -234633269 + MLT1B LTR MaLR 168 373 -17 2122 99 11 3 chr1 8032558 8032862 -234631491 + AluSx SINE Alu 1 306 0 2157 123 0 10 chr1 8032862 8033170 -234631183 + AluSx SINE Alu 1 305 -7 1460 219 26 6 chr1 8033955 8034302 -234630051 + L1MC4 LINE L1 7280 7633 -409 958 170 0 6 chr1 8034402 8034561 -234629792 - AluSq SINE Alu -19 294 137 1285 170 208 0 chr1 8034680 8035107 -234629246 + Charlie1b DNA MER1_type 6 523 0 2175 95 63 0 chr1 8035313 8035598 -234628755 + AluSq SINE Alu 1 303 -10 241 202 228 70 chr1 8036301 8036372 -234627981 + MER112 DNA MER1_type 8 66 -194 348 24 0 0 chr1 8036372 8036413 -234627940 + (TG)n Simple_repeat Simple_repeat 1 41 0 241 202 228 70 chr1 8036413 8036455 -234627898 + MER112 DNA MER1_type 66 139 -121 198 91 0 0 chr1 8036466 8036499 -234627854 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1793 137 128 18 chr1 8036511 8036681 -234627672 + THE1C LTR MaLR 2 152 -223 198 0 0 0 chr1 8036681 8036703 -234627650 + (TC)n Simple_repeat Simple_repeat 1 22 0 1793 137 128 18 chr1 8036703 8036869 -234627484 + THE1C LTR MaLR 152 375 0 523 124 165 10 chr1 8036869 8036966 -234627387 - AluJb SINE Alu -200 112 1 291 207 81 58 chr1 8036966 8037053 -234627300 + MER112 DNA MER1_type 167 255 -5 423 200 161 141 chr1 8037782 8037933 -234626420 + L1M4 LINE L1 3670 3817 -2329 1997 105 14 18 chr1 8037933 8038246 -234626107 + AluSx SINE Alu 1 312 0 423 200 161 141 chr1 8038246 8038359 -234625994 + L1M4 LINE L1 3817 3926 -2220 1979 156 17 3 chr1 8038359 8038661 -234625692 - AluSx SINE Alu -6 306 1 423 200 161 141 chr1 8038661 8038799 -234625554 + L1M4 LINE L1 3926 4082 -2064 248 235 202 45 chr1 8038803 8039050 -234625303 + L1MEd LINE L1 586 871 -5248 1728 211 7 45 chr1 8039058 8039147 -234625206 + L1M4 LINE L1 4709 4800 -1346 1830 104 94 14 chr1 8039147 8039434 -234624919 + AluSx SINE Alu 1 310 -2 1728 211 7 45 chr1 8039434 8039560 -234624793 + L1M4 LINE L1 4800 4929 -1217 1696 174 9 25 chr1 8039560 8039694 -234624659 + AluJo SINE Alu 1 136 -176 1993 142 0 32 chr1 8039694 8040010 -234624343 + AluSx SINE Alu 1 306 -6 1696 174 9 25 chr1 8040010 8040192 -234624161 + AluJo SINE Alu 136 312 0 1728 211 7 45 chr1 8040192 8040420 -234623933 + L1M4 LINE L1 4929 5136 -1010 502 298 35 67 chr1 8040428 8040710 -234623643 + L1MEd LINE L1 2253 2525 -3604 369 162 10 30 chr1 8040885 8040984 -234623369 + GA-rich Low_complexity Low_complexity 2 98 0 5519 141 72 15 chr1 8040984 8041709 -234622644 + L1MC1 LINE L1 5114 5929 -404 2289 82 0 13 chr1 8041709 8042014 -234622339 + AluSc SINE Alu 1 301 -8 5519 141 72 15 chr1 8042014 8042439 -234621914 + L1MC1 LINE L1 5929 6328 -5 686 179 42 2 chr1 8042445 8042682 -234621671 + AluJ SINE Alu 2 290 -22 27 0 0 0 chr1 8042702 8042729 -234621624 + AT_rich Low_complexity Low_complexity 1 27 0 350 222 56 58 chr1 8042748 8042896 -234621457 + L1MCa LINE L1 1941 2064 -4362 425 67 67 0 chr1 8042897 8043001 -234621352 + (TA)n Simple_repeat Simple_repeat 2 112 0 302 279 29 44 chr1 8043005 8043141 -234621212 + L1MCa LINE L1 1931 2064 -4362 200 59 29 0 chr1 8043142 8043176 -234621177 + (TA)n Simple_repeat Simple_repeat 2 36 0 306 197 61 0 chr1 8043356 8043422 -234620931 + L1MCa LINE L1 1995 2064 -4362 * 375 285 30 17 chr1 8043369 8043529 -234620824 - L1MC4 LINE L1 -1340 6982 1906 268 43 43 0 chr1 8043530 8043576 -234620777 + (TA)n Simple_repeat Simple_repeat 2 49 0 2350 120 0 0 chr1 8043586 8043894 -234620459 + AluSx SINE Alu 1 308 -4 434 202 141 46 chr1 8043905 8044251 -234620102 + L1MEd LINE L1 844 1250 -4869 554 310 35 4 chr1 8044279 8044508 -234619845 + L1M4 LINE L1 4460 4695 -1451 1877 170 3 0 chr1 8044637 8044919 -234619434 + AluJo SINE Alu 1 283 -29 652 266 144 9 chr1 8045085 8045230 -234619123 + MIR SINE MIR 3 127 -135 2362 102 0 3 chr1 8045230 8045534 -234618819 + AluSg SINE Alu 1 303 -7 652 266 144 9 chr1 8045534 8045617 -234618736 + MIR SINE MIR 127 262 0 1960 148 7 7 chr1 8045628 8045931 -234618422 + AluSx SINE Alu 1 303 -9 2374 89 3 0 chr1 8046176 8046479 -234617874 - AluSq SINE Alu -9 304 1 218 230 71 95 chr1 8046533 8046659 -234617694 + MIR3 SINE MIR 82 204 -4 2242 121 20 0 chr1 8047002 8047308 -234617045 + AluSx SINE Alu 1 312 0 950 176 78 5 chr1 8048399 8048603 -234615750 - MER20 DNA MER1_type 0 219 1 308 262 85 32 chr1 8048845 8049008 -234615345 + MIR SINE MIR 15 187 -62 2585 52 10 7 chr1 8049125 8049433 -234614920 - AluY SINE Alu -2 309 1 1982 134 33 16 chr1 8049527 8049832 -234614521 - AluJo SINE Alu -2 310 1 880 106 29 39 chr1 8049984 8050384 -234613969 + (CA)n Simple_repeat Simple_repeat 1 396 0 556 134 43 12 chr1 8050437 8050691 -234613662 + (CA)n Simple_repeat Simple_repeat 1 262 0 464 145 120 51 chr1 8050809 8050926 -234613427 - L2 LINE L2 0 3313 3189 1963 163 10 3 chr1 8051003 8051310 -234613043 + AluJb SINE Alu 3 311 -1 1914 158 3 23 chr1 8051320 8051623 -234612730 + AluJo SINE Alu 3 299 -13 318 264 32 8 chr1 8052341 8052466 -234611887 - L2 LINE L2 -292 2980 2853 2132 123 0 0 chr1 8052592 8052901 -234611452 + AluSx SINE Alu 1 309 0 246 160 0 0 chr1 8053059 8053109 -234611244 + L1M4 LINE L1 5408 5457 -727 508 68 55 0 chr1 8053126 8053199 -234611154 - L1MA8 LINE L1 -341 5950 5874 1101 173 19 39 chr1 8053283 8053360 -234610993 - AluJo SINE Alu -103 209 132 2296 112 3 10 chr1 8053360 8053674 -234610679 - AluSx SINE Alu 0 312 1 2813 19 0 3 chr1 8053675 8053987 -234610366 - AluY SINE Alu 0 311 1 1101 173 19 39 chr1 8053987 8054115 -234610238 - AluJo SINE Alu -179 133 6 184 364 11 0 chr1 8054254 8054342 -234610011 - L2 LINE L2 -785 2529 2441 969 201 91 80 chr1 8054545 8054761 -234609592 + LTR56 LTR ERV1 9 221 -216 2385 83 0 13 chr1 8054761 8055062 -234609291 + AluSg SINE Alu 1 297 -13 969 201 91 80 chr1 8055062 8055292 -234609061 + LTR56 LTR ERV1 221 437 0 391 186 145 40 chr1 8055582 8055706 -234608647 + MIR SINE MIR 14 150 -112 681 107 34 6 chr1 8055707 8055943 -234608410 + AluJ SINE Alu 1 292 -20 259 284 54 0 chr1 8055972 8056046 -234608307 + MIR SINE MIR 180 257 -5 198 254 45 15 chr1 8056076 8056143 -234608210 - MIR SINE MIR -131 131 63 1739 169 3 23 chr1 8056222 8056524 -234607829 - AluJb SINE Alu -16 296 1 1883 170 10 6 chr1 8056688 8056999 -234607354 + AluJo SINE Alu 1 312 0 573 211 59 0 chr1 8057707 8057859 -234606494 + MER20 DNA MER1_type 56 216 -3 2477 86 0 0 chr1 8057897 8058198 -234606155 + AluSx SINE Alu 1 301 -11 834 232 75 46 chr1 8058224 8058438 -234605915 - MIR SINE MIR -10 252 29 2201 83 0 0 chr1 8058438 8058702 -234605651 - AluSq SINE Alu -11 302 39 834 232 75 46 chr1 8058702 8058728 -234605625 - MIR SINE MIR -233 29 5 2509 81 7 0 chr1 8060061 8060369 -234603984 - AluSq SINE Alu -3 310 1 2166 94 0 0 chr1 8061116 8061392 -234602961 + AluSx SINE Alu 1 276 -36 389 279 85 0 chr1 8061871 8062036 -234602317 + (CCCCAG)n Simple_repeat Simple_repeat 1 179 0 618 124 171 0 chr1 8062292 8062397 -234601956 + FRAM SINE Alu 46 168 -8 221 302 93 35 chr1 8062457 8062629 -234601724 - L2 LINE L2 -665 2649 2468 2129 116 19 41 chr1 8062662 8062980 -234601373 + AluSx SINE Alu 1 311 -1 581 272 241 18 chr1 8063246 8063628 -234600725 + MLT1J LTR MaLR 43 509 -2 3532 176 48 38 chr1 8064210 8064587 -234599766 - L1MB7 LINE L1 -1 6183 5811 2152 107 3 10 chr1 8064587 8064887 -234599466 - AluSx SINE Alu -13 299 2 3532 176 48 38 chr1 8064887 8065182 -234599171 - L1MB7 LINE L1 -373 5811 5498 1351 145 123 45 chr1 8065182 8065331 -234599022 - AluJo SINE Alu -22 290 154 2411 93 0 0 chr1 8065331 8065631 -234598722 - AluSq SINE Alu -11 302 3 1351 145 123 45 chr1 8065631 8065750 -234598603 - AluJo SINE Alu -158 154 1 3532 176 48 38 chr1 8065750 8065923 -234598430 - L1MB7 LINE L1 -686 5498 5328 285 128 0 0 chr1 8065923 8065970 -234598383 + (TC)n Simple_repeat Simple_repeat 2 48 0 2232 125 3 0 chr1 8065978 8066283 -234598070 - AluSx SINE Alu -6 306 1 1206 198 24 10 chr1 8066283 8066572 -234597781 - L1MB7 LINE L1 -809 5337 5042 1019 221 36 50 chr1 8066558 8066648 -234597705 - L1MB7 LINE L1 -1346 4800 4710 * 2040 140 7 0 chr1 8066648 8066941 -234597412 - AluSx SINE Alu -13 299 5 1019 221 36 50 chr1 8066941 8067208 -234597145 - L1MB7 LINE L1 -1436 4710 4448 686 169 46 23 chr1 8067283 8067413 -234596940 + AluJo/FLAM SINE Alu 1 133 -169 2177 110 16 7 chr1 8067413 8067723 -234596630 + AluSq SINE Alu 1 313 0 388 288 137 36 chr1 8067735 8067874 -234596479 - L1ME3A LINE L1 -23 6147 5995 555 169 0 0 chr1 8067897 8067986 -234596367 - FLAM_A SINE Alu -46 96 8 907 208 11 60 chr1 8068041 8068306 -234596047 - L1ME3A LINE L1 -224 5946 5695 23 0 0 0 chr1 8068794 8068817 -234595536 + AT_rich Low_complexity Low_complexity 1 23 0 2284 94 3 7 chr1 8069337 8069636 -234594717 + AluY SINE Alu 3 300 -11 6798 116 3 8 chr1 8069640 8070640 -234593713 + HERVFH19I LTR ERV1 1210 2204 -5515 2182 74 0 0 chr1 8070744 8071001 -234593352 - AluY SINE Alu -54 257 1 2610 121 36 5 chr1 8071027 8071416 -234592937 + HERVFH19I LTR ERV1 1 401 -7318 * 2877 137 11 4 chr1 8071409 8071876 -234592477 + HERVFH19I LTR ERV1 702 1171 -4415 824 114 14 2 chr1 8072261 8072484 -234591869 + AluJ SINE Alu 29 300 -12 294 202 83 89 chr1 8072782 8072966 -234591387 + MLT1C LTR MaLR 103 268 -199 2037 106 24 3 chr1 8073010 8073303 -234591050 + AluSx SINE Alu 1 299 -13 1706 161 4 4 chr1 8073608 8073888 -234590465 - AluJb SINE Alu -18 294 15 1957 114 19 62 chr1 8074415 8074740 -234589613 - AluSx SINE Alu -1 311 1 183 337 101 6 chr1 8074773 8074942 -234589411 + L2 LINE L2 2468 2652 -662 629 123 170 0 chr1 8075005 8075111 -234589242 - FRAM SINE Alu -7 169 46 1366 113 10 0 chr1 8076456 8076660 -234587693 + MLT2A2 LTR ERVL 1 206 -247 832 116 68 27 chr1 8076661 8076807 -234587546 + AluSq/x SINE Alu 1 152 -161 351 153 0 0 chr1 8076808 8076867 -234587486 + Alu SINE Alu 241 299 -2 * 1817 81 18 56 chr1 8076849 8077048 -234587305 + MLT2A2 LTR ERVL 181 386 -67 2161 86 30 7 chr1 8077048 8077349 -234587004 + AluY SINE Alu 1 308 -3 1817 81 18 56 chr1 8077349 8077369 -234586984 + MLT2A2 LTR ERVL 386 405 -48 1909 147 3 3 chr1 8077369 8077669 -234586684 + AluSx SINE Alu 1 300 -12 1817 81 18 56 chr1 8077669 8077732 -234586621 + MLT2A2 LTR ERVL 405 453 0 1839 157 10 13 chr1 8078403 8078581 -234585772 - AluJb SINE Alu 0 312 134 2232 96 0 7 chr1 8078581 8078883 -234585470 - AluSq SINE Alu -13 300 1 1839 157 10 13 chr1 8078883 8079017 -234585336 - AluJb SINE Alu -178 134 1 2123 192 47 5 chr1 8079297 8079725 -234584628 + L1MB4 LINE L1 5696 6141 -39 248 189 0 0 chr1 8079725 8079762 -234584591 + Alu SINE Alu 1 37 -265 604 124 0 0 chr1 8079762 8079851 -234584502 - AluSg/x SINE Alu -9 303 215 1048 113 38 6 chr1 8079857 8080017 -234584336 - AluSq SINE Alu -148 165 1 279 277 64 14 chr1 8080029 8080170 -234584183 + L2 LINE L2 2700 2847 -467 233 211 197 0 chr1 8080174 8080245 -234584108 - MLT1E2 LTR MaLR -368 258 174 980 153 13 0 chr1 8080261 8080418 -234583935 - FRAM SINE Alu -1 175 17 1550 164 54 0 chr1 8080643 8080923 -234583430 + AluJb SINE Alu 1 295 -17 1769 101 4 4 chr1 8080979 8081226 -234583127 - AluSq SINE Alu -66 247 1 22 56 0 0 chr1 8081666 8081702 -234582651 + AT_rich Low_complexity Low_complexity 1 36 0 611 214 29 46 chr1 8081714 8081887 -234582466 + L1MD2 LINE L1 6180 6349 -10 * 1361 168 51 9 chr1 8081863 8082164 -234582189 + L1MD3 LINE L1 7600 7994 -1 2511 51 3 6 chr1 8082366 8082678 -234581675 + AluSq SINE Alu 3 313 0 1310 119 0 10 chr1 8083280 8083474 -234580879 - AluSx SINE Alu -57 255 64 1650 125 33 22 chr1 8083482 8083754 -234580599 - AluSx SINE Alu -23 289 15 1833 139 14 7 chr1 8084240 8084534 -234579819 - AluJb SINE Alu -16 296 1 790 138 69 0 chr1 8084538 8084681 -234579672 - MLT1B LTR MaLR -215 175 23 337 189 0 0 chr1 8084681 8084734 -234579619 + Alu SINE Alu 1 53 -249 * 361 65 0 0 chr1 8084729 8084775 -234579578 + FLAM SINE Alu 81 126 -7 2434 80 0 0 chr1 8084788 8085099 -234579254 + AluSx SINE Alu 1 311 -1 199 342 17 42 chr1 8085315 8085435 -234578918 + L3b LINE CR1 1218 1334 -249 201 138 0 0 chr1 8085755 8085784 -234578569 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 832 171 0 11 chr1 8085786 8085967 -234578386 + GA-rich Low_complexity Low_complexity 1 179 0 1742 131 26 35 chr1 8085969 8086282 -234578071 + AluSx SINE Alu 1 310 -2 547 190 107 133 chr1 8086562 8086909 -234577444 - Charlie4a DNA MER1_type -19 489 152 952 139 0 0 chr1 8086936 8087107 -234577246 + FRAM SINE Alu 2 172 0 653 171 8 0 chr1 8088075 8088198 -234576155 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 8088199 8088234 -234576119 + AT_rich Low_complexity Low_complexity 1 35 0 1327 155 5 0 chr1 8088240 8088453 -234575900 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 8088636 8088925 -234575428 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 8089702 8089736 -234574617 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 8089835 8090028 -234574325 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 8090130 8090437 -234573916 + AluSq SINE Alu 1 299 -14 265 298 46 53 chr1 8091636 8091767 -234572586 + MER5A DNA MER1_type 46 175 -14 1948 109 30 46 chr1 8091844 8092146 -234572207 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 8092559 8092700 -234571653 + FLAM_C SINE Alu 1 141 -2 1591 204 31 28 chr1 8092740 8093128 -234571225 + MLT2C1 LTR ERVL 1 389 -8 673 141 0 113 chr1 8093336 8093478 -234570875 - AluJo SINE Alu -178 134 9 1406 131 49 16 chr1 8093482 8093727 -234570626 - AluJo SINE Alu -18 294 42 496 306 153 0 chr1 8094142 8094358 -234569995 - MIR SINE MIR 0 262 14 1506 162 0 81 chr1 8096246 8096431 -234567922 - AluJb SINE Alu -6 306 158 2233 103 0 3 chr1 8096431 8096732 -234567621 - AluSx SINE Alu -11 301 2 1506 162 0 81 chr1 8096732 8096879 -234567474 - AluJb SINE Alu -154 158 1 2186 91 13 3 chr1 8097605 8097914 -234566439 + AluSx SINE Alu 1 312 0 2022 85 26 29 chr1 8097926 8098232 -234566121 + AluSg SINE Alu 1 305 -5 1735 156 30 7 chr1 8098687 8098982 -234565371 + AluJo SINE Alu 1 302 -10 240 111 0 0 chr1 8099078 8099114 -234565239 + (TG)n Simple_repeat Simple_repeat 2 37 0 895 132 0 0 chr1 8099140 8099276 -234565077 + AluJb SINE Alu 1 136 -176 2218 103 3 0 chr1 8099868 8100169 -234564184 - AluSx SINE Alu -8 304 3 203 322 17 0 chr1 8100564 8100623 -234563730 + L2 LINE L2 3244 3303 -10 2195 100 0 0 chr1 8100815 8101105 -234563248 + AluY SINE Alu 1 290 -21 224 209 0 0 chr1 8103208 8103251 -234561102 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 8103286 8103379 -234560974 - L2 LINE L2 -338 2976 2873 297 322 68 1 chr1 8103651 8103797 -234560556 + MIR SINE MIR 18 169 -67 1971 148 0 0 chr1 8104025 8104323 -234560030 - AluJo SINE Alu -14 298 1 2170 92 7 13 chr1 8105151 8105456 -234558897 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 8105675 8105791 -234558562 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 8105791 8105923 -234558430 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 8105923 8106022 -234558331 - MER2 DNA MER2_type -111 234 123 2163 92 3 0 chr1 8106023 8106317 -234558036 + AluSq SINE Alu 1 295 -18 774 134 84 0 chr1 8106319 8106438 -234557915 + AluSg/x SINE Alu 145 273 -39 590 215 25 0 chr1 8106445 8106566 -234557787 - MER2 DNA MER2_type -220 125 2 1378 122 22 17 chr1 8107086 8107316 -234557037 - AluJb SINE Alu 0 312 82 2104 131 0 0 chr1 8107417 8107715 -234556638 + AluSx SINE Alu 1 298 -14 454 183 0 24 chr1 8107715 8107791 -234556562 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 8108011 8108259 -234556094 - MIR SINE MIR -3 259 8 2789 199 46 33 chr1 8108352 8108934 -234555419 - MLT1E LTR MaLR -3 590 1 221 0 0 33 chr1 8109802 8109832 -234554521 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1058 162 5 79 chr1 8110371 8110532 -234553821 - MER20 DNA MER1_type -4 215 72 2220 119 0 0 chr1 8110532 8110835 -234553518 - AluSx SINE Alu -9 303 1 1058 162 5 79 chr1 8110835 8110889 -234553464 - MER20 DNA MER1_type -147 72 16 907 83 15 8 chr1 8111594 8111726 -234552627 - AluSp SINE Alu -180 133 1 255 125 0 0 chr1 8113133 8113173 -234551180 + (T)n Simple_repeat Simple_repeat 1 40 0 638 281 50 15 chr1 8114158 8114241 -234550112 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 8114241 8114366 -234549987 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 8114366 8114390 -234549963 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 8114390 8114564 -234549789 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 8114564 8114679 -234549674 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 8114719 8114841 -234549512 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 8114884 8114965 -234549388 - MLT1L LTR MaLR -534 81 1 355 358 0 0 chr1 8115036 8115131 -234549222 + L1MC4 LINE L1 6614 6708 -1334 2114 112 3 3 chr1 8115152 8115448 -234548905 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 8115565 8115591 -234548762 + (T)n Simple_repeat Simple_repeat 1 26 0 2098 97 16 10 chr1 8116117 8116426 -234547927 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 8116667 8116995 -234547358 - AluSq SINE Alu 0 323 1 1362 179 80 7 chr1 8116997 8117271 -234547082 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 8118451 8118765 -234545588 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 8120185 8120244 -234544109 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 8120250 8120396 -234543957 - AluJo/FRAM SINE Alu -11 301 144 2196 102 14 0 chr1 8320668 8320951 -234343402 + AluSp SINE Alu 3 289 -24 316 182 0 4 chr1 8322107 8322177 -234342176 + FRAM/FAM SINE Alu 1 52 -123 912 126 0 0 chr1 8322227 8322354 -234341999 - FLAM_C SINE Alu -16 127 1 1097 174 0 0 chr1 8322420 8322598 -234341755 - FRAM SINE Alu -1 175 1 650 310 92 38 chr1 8322736 8323027 -234341326 - MARNA DNA Mariner -59 527 253 2220 98 10 26 chr1 8323027 8323333 -234341020 - AluSg SINE Alu -9 301 1 2402 104 3 0 chr1 8323335 8323644 -234340709 - AluSq SINE Alu -3 310 1 650 310 92 38 chr1 8323644 8323720 -234340633 - MARNA DNA Mariner -333 253 137 2119 125 0 0 chr1 8323956 8324265 -234340088 + AluSg SINE Alu 1 309 0 1659 95 151 0 chr1 8325103 8325355 -234338998 + AluSg SINE Alu 1 290 -20 2182 127 3 0 chr1 8325365 8325664 -234338689 + AluSp SINE Alu 1 300 -13 2232 131 0 0 chr1 8325664 8325962 -234338391 + AluSg SINE Alu 1 298 -12 2278 116 0 3 chr1 8325971 8326273 -234338080 + AluSx SINE Alu 1 301 -11 1743 146 0 4 chr1 8326272 8326532 -234337821 + AluSx SINE Alu 50 308 -4 * 2194 112 3 37 chr1 8327060 8327263 -234337090 - AluSq SINE Alu -2 311 122 2539 68 3 7 chr1 8327263 8327573 -234336780 - AluSx SINE Alu -3 309 1 2194 112 3 37 chr1 8327573 8327691 -234336662 - AluSq SINE Alu -191 122 1 2324 102 0 0 chr1 8327750 8328043 -234336310 - AluSc SINE Alu -16 293 1 467 225 0 115 chr1 8328122 8328185 -234336168 + HsTC2 DNA Tc2 1558 1627 -271 1694 175 28 3 chr1 8328185 8328470 -234335883 + AluJb SINE Alu 1 292 -20 467 225 0 115 chr1 8328470 8328588 -234335765 + HsTC2 DNA Tc2 1627 1718 -180 2461 94 0 0 chr1 8328588 8328896 -234335457 + AluSx SINE Alu 1 308 -4 1261 116 0 22 chr1 8328938 8328953 -234335400 + AluSc SINE Alu 120 134 -175 2386 98 3 0 chr1 8328953 8329250 -234335103 + AluSx SINE Alu 1 298 -14 1261 116 0 22 chr1 8329250 8329415 -234334938 + AluSc SINE Alu 134 296 -13 2137 110 10 7 chr1 8329417 8329707 -234334646 + AluY SINE Alu 3 293 -18 2350 110 0 3 chr1 8329855 8330165 -234334188 + AluSx SINE Alu 1 309 -3 2325 96 0 0 chr1 8330432 8330723 -234333630 + AluSc SINE Alu 5 295 -14 410 203 187 0 chr1 8330758 8330881 -234333472 + MLT1H LTR MaLR 35 180 -369 2346 81 17 3 chr1 8331332 8331627 -234332726 - AluY SINE Alu -12 299 1 339 272 55 40 chr1 8331633 8331905 -234332448 - HAL1 LINE L1 -5 2502 2227 1412 252 75 37 chr1 8331934 8332272 -234332081 - HAL1 LINE L1 -923 1584 1211 1900 123 4 0 chr1 8332272 8332532 -234331821 - AluSx SINE Alu -12 300 40 1412 252 75 37 chr1 8332532 8332809 -234331544 - HAL1 LINE L1 -1296 1211 946 246 296 14 0 chr1 8332881 8332952 -234331401 - HAL1 LINE L1 -1798 709 638 323 261 87 87 chr1 8332953 8333068 -234331285 + MIR SINE MIR 5 119 -143 1335 117 0 6 chr1 8333071 8333251 -234331102 - AluSg/x SINE Alu 0 312 134 1993 71 0 20 chr1 8333251 8333504 -234330849 - AluY SINE Alu -11 300 53 273 114 0 0 chr1 8333604 8333648 -234330705 - AluJ/FLAM SINE Alu -224 78 35 1169 154 5 41 chr1 8333656 8333877 -234330476 + AluJo SINE Alu 87 299 -13 1990 113 53 3 chr1 8333981 8334264 -234330089 + AluY SINE Alu 1 297 -14 2466 84 0 0 chr1 8334351 8334649 -234329704 + AluSc SINE Alu 1 298 -11 2167 131 3 6 chr1 8334705 8335017 -234329336 - AluSx SINE Alu -1 311 1 1530 178 65 7 chr1 8335037 8335312 -234329041 + AluJo SINE Alu 3 293 -19 2171 128 0 0 chr1 8335330 8335626 -234328727 + AluSx SINE Alu 1 296 -16 24 38 0 38 chr1 8335626 8335644 -234328709 + AT_rich Low_complexity Low_complexity 1 18 -33 2263 116 0 0 chr1 8335644 8335936 -234328417 + AluSx SINE Alu 1 292 -20 24 38 0 38 chr1 8335936 8335970 -234328383 + AT_rich Low_complexity Low_complexity 18 51 0 612 249 83 5 chr1 8336041 8336246 -234328107 + HAL1 LINE L1 1359 1579 -928 1992 128 0 43 chr1 8336255 8336560 -234327793 + AluSx SINE Alu 1 292 -20 284 244 37 24 chr1 8336665 8336747 -234327606 - HAL1 LINE L1 -767 1740 1658 267 266 195 0 chr1 8336740 8336853 -234327500 + HAL1 LINE L1 1678 1812 -695 * 1702 157 29 55 chr1 8337000 8337312 -234327041 + AluJb SINE Alu 2 305 -7 2478 69 0 3 chr1 8337382 8337685 -234326668 - AluY SINE Alu -9 302 1 208 158 26 0 chr1 8337734 8337772 -234326581 + L2 LINE L2 2720 2758 -556 285 226 97 0 chr1 8337873 8337935 -234326418 + MIR SINE MIR 20 87 -121 2265 97 7 3 chr1 8338113 8338411 -234325942 - AluSg SINE Alu -11 299 1 304 273 15 0 chr1 8338432 8338498 -234325855 + L1MC/D LINE L1 5709 5775 -2033 2026 145 0 0 chr1 8338588 8338896 -234325457 - AluSx SINE Alu 0 308 1 284 178 0 0 chr1 8338913 8338958 -234325395 + Alu SINE Alu 2 46 -255 343 143 86 0 chr1 8339852 8339922 -234324431 + MER103 DNA DNA 9 84 -82 2608 74 0 0 chr1 8340156 8340467 -234323886 - AluY SINE Alu 0 311 1 1296 148 106 68 chr1 8340666 8340742 -234323611 - Charlie1 DNA MER1_type -4 2757 2685 2004 131 13 45 chr1 8340742 8341056 -234323297 - AluSq SINE Alu -9 304 1 1296 148 106 68 chr1 8341056 8341177 -234323176 - Charlie1 DNA MER1_type -76 2685 2570 2421 103 0 0 chr1 8341177 8341479 -234322874 - AluSx SINE Alu -10 302 1 1296 148 106 68 chr1 8341479 8341678 -234322675 - Charlie1 DNA MER1_type -191 2570 2345 2209 107 13 0 chr1 8341922 8342221 -234322132 - AluSg SINE Alu -7 303 1 1691 170 47 0 chr1 8342221 8342498 -234321855 - AluJb SINE Alu -19 293 4 2517 57 0 7 chr1 8342682 8342983 -234321370 - AluSc SINE Alu -10 299 1 2240 124 3 0 chr1 8343244 8343543 -234320810 - AluSx SINE Alu -12 300 1 2128 136 7 10 chr1 8343941 8344250 -234320103 + AluJb SINE Alu 1 308 -4 292 282 0 0 chr1 8344271 8344342 -234320011 - MIR3 SINE MIR -14 194 124 307 349 77 26 chr1 8344649 8344844 -234319509 - L3 LINE CR1 -2 1575 1371 945 254 28 14 chr1 8344862 8345075 -234319278 + MIR SINE MIR 3 218 -44 671 139 130 83 chr1 8345092 8345208 -234319145 - L1M4 LINE L1 -2378 3768 3659 2340 88 0 3 chr1 8345208 8345504 -234318849 + AluSp SINE Alu 1 295 -18 671 139 130 83 chr1 8345504 8345603 -234318750 - L1M4 LINE L1 -2487 3659 3543 691 208 87 63 chr1 8346608 8346815 -234317538 - L2 LINE L2 0 3313 3102 2385 55 41 3 chr1 8346833 8347125 -234317228 + AluY SINE Alu 1 303 -8 2250 97 0 0 chr1 8347136 8347415 -234316938 + AluSg SINE Alu 1 279 -31 946 266 38 26 chr1 8347444 8347711 -234316642 - L2 LINE L2 -495 2819 2550 2267 106 0 3 chr1 8348020 8348323 -234316030 + AluSx SINE Alu 1 302 -10 217 318 45 0 chr1 8348376 8348442 -234315911 - MIR3 SINE MIR -11 197 129 240 385 9 0 chr1 8348551 8348660 -234315693 + L2 LINE L2 3194 3303 -10 2400 99 0 3 chr1 8348912 8349216 -234315137 - AluSq SINE Alu -10 303 1 827 285 61 4 chr1 8349219 8349465 -234314888 + MIR SINE MIR 3 262 0 307 247 116 41 chr1 8349459 8349605 -234314748 + L2 LINE L2 3155 3311 -2 * 535 268 160 72 chr1 8349587 8349762 -234314591 - L2 LINE L2 -4 3309 3151 2446 56 0 26 chr1 8349762 8350065 -234314288 + AluY SINE Alu 1 295 -16 535 268 160 72 chr1 8350065 8350289 -234314064 - L2 LINE L2 -162 3151 2875 667 269 71 10 chr1 8351422 8351619 -234312734 - MIR SINE MIR -52 210 2 406 214 60 34 chr1 8351720 8351837 -234312516 + MIR SINE MIR 50 169 -93 292 388 0 0 chr1 8352319 8352422 -234311931 - L2 LINE L2 0 3272 3170 2470 86 0 0 chr1 8352422 8352725 -234311628 + AluY SINE Alu 1 303 -8 1545 161 31 23 chr1 8355106 8355366 -234308987 - AluY SINE Alu -49 262 1 2142 121 17 0 chr1 8355399 8355696 -234308657 - AluSx SINE Alu -10 302 1 258 32 0 0 chr1 8355697 8355728 -234308625 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2093 112 4 4 chr1 8355728 8356006 -234308347 - AluSc SINE Alu -28 281 4 2445 88 0 0 chr1 8356009 8356314 -234308039 - AluSx SINE Alu -7 305 1 333 182 76 0 chr1 8356353 8356419 -234307934 - MER2 DNA MER2_type -1 344 274 522 110 0 0 chr1 8356419 8356501 -234307852 + L1PB1 LINE L1 6069 6150 -1 21 82 0 0 chr1 8356501 8356550 -234307803 + AT_rich Low_complexity Low_complexity 1 49 0 1268 135 19 5 chr1 8356600 8356807 -234307546 - MER2 DNA MER2_type -135 210 1 516 277 55 25 chr1 8356810 8356939 -234307414 - L1M4 LINE L1 -812 5334 5195 2186 128 0 0 chr1 8356939 8357244 -234307109 - AluSc SINE Alu -4 305 1 516 277 55 25 chr1 8357244 8357316 -234307037 - L1M4 LINE L1 -951 5195 5127 2244 101 16 10 chr1 8357341 8357649 -234306704 - AluSg SINE Alu 0 310 1 1402 175 15 94 chr1 8357652 8357983 -234306370 - AluJo SINE Alu -7 305 1 2572 68 0 0 chr1 8358005 8358315 -234306038 - AluY SINE Alu -1 310 1 2145 103 3 29 chr1 8358318 8358495 -234305858 - AluSg SINE Alu -6 304 137 2354 108 0 0 chr1 8358495 8358801 -234305552 - AluSg SINE Alu -4 306 1 2145 103 3 29 chr1 8358801 8358935 -234305418 - AluSg SINE Alu -173 137 1 1072 103 0 0 chr1 8358935 8359071 -234305282 - AluSq/x SINE Alu -176 136 1 608 283 123 24 chr1 8359172 8359554 -234304799 + L1MC4 LINE L1 7356 7775 -267 1784 142 17 30 chr1 8359560 8359691 -234304662 + AluSx SINE Alu 1 132 -180 2305 88 3 10 chr1 8359691 8359987 -234304366 + AluSg SINE Alu 1 294 -16 2011 138 10 0 chr1 8359990 8360279 -234304074 + AluSx SINE Alu 1 292 -20 2410 90 3 0 chr1 8360281 8360582 -234303771 + AluY SINE Alu 1 302 -9 1784 142 17 30 chr1 8360582 8360739 -234303614 + AluSx SINE Alu 135 292 -20 1519 168 0 0 chr1 8360739 8360965 -234303388 + AluJb SINE Alu 80 305 -7 1072 173 0 0 chr1 8360967 8361140 -234303213 + AluJb SINE Alu 136 308 -4 632 252 53 68 chr1 8361150 8361416 -234302937 + L1MC4 LINE L1 7781 8042 0 1136 129 12 12 chr1 8362876 8363047 -234301306 - AluJo/FRAM SINE Alu -9 303 133 2589 50 0 0 chr1 8363048 8363345 -234301008 - AluY SINE Alu -12 299 3 346 161 0 0 chr1 8363383 8363439 -234300914 + AluS SINE Alu 2 57 -245 1291 123 29 84 chr1 8363667 8363846 -234300507 + MLT1B LTR MaLR 4 211 -256 2478 77 3 0 chr1 8363846 8364145 -234300208 + AluY SINE Alu 2 301 -10 1291 123 29 84 chr1 8364145 8364276 -234300077 + MLT1B LTR MaLR 211 348 -119 649 142 11 40 chr1 8364345 8364521 -234299832 + GA-rich Low_complexity Low_complexity 2 172 0 2111 135 0 19 chr1 8364528 8364846 -234299507 + AluSx SINE Alu 1 312 0 2470 77 0 6 chr1 8364851 8365164 -234299189 + AluY SINE Alu 1 311 0 339 129 65 0 chr1 8365189 8365251 -234299102 - AluJo SINE Alu 0 302 237 924 181 139 0 chr1 8365252 8365418 -234298935 - AluJo SINE Alu -123 189 1 689 175 0 0 chr1 8365420 8365534 -234298819 + MLT1B LTR MaLR 275 388 -2 313 251 174 49 chr1 8365949 8365985 -234298368 - MIR SINE MIR -63 145 115 2087 148 0 3 chr1 8365985 8366282 -234298071 - AluJo SINE Alu -16 296 1 313 251 174 49 chr1 8366282 8366408 -234297945 - MIR SINE MIR -93 115 14 608 103 0 41 chr1 8366460 8366557 -234297796 + AluS SINE Alu 1 93 -220 871 255 157 40 chr1 8367128 8367328 -234297025 - L2 LINE L2 0 3313 3138 2036 109 0 4 chr1 8367328 8367595 -234296758 + AluSx SINE Alu 1 266 -46 871 255 157 40 chr1 8367595 8367841 -234296512 - L2 LINE L2 -175 3138 2815 695 213 18 7 chr1 8368090 8368368 -234295985 - MLT1I LTR MaLR -7 402 1 736 112 32 8 chr1 8370246 8370371 -234293982 - AluY SINE Alu -171 140 13 1894 173 0 0 chr1 8370625 8370944 -234293409 + AluJb SINE Alu 1 300 -12 2127 143 0 0 chr1 8371295 8371589 -234292764 - AluSx SINE Alu -14 298 5 2327 114 0 0 chr1 8372010 8372309 -234292044 + AluSx SINE Alu 2 300 -12 2200 109 0 56 chr1 8372644 8372782 -234291571 + AluSx SINE Alu 1 145 -167 207 100 0 0 chr1 8372782 8372812 -234291541 + (TA)n Simple_repeat Simple_repeat 1 30 0 2200 109 0 56 chr1 8372812 8372993 -234291360 + AluSx SINE Alu 145 302 -10 660 157 0 8 chr1 8373112 8373233 -234291120 - AluSg/x SINE Alu -5 305 186 210 71 0 0 chr1 8373560 8373588 -234290765 + (TCC)n Simple_repeat Simple_repeat 3 30 0 306 326 123 9 chr1 8374141 8374368 -234289985 - MIR SINE MIR 0 262 10 1742 98 0 0 chr1 8374647 8374861 -234289492 + AluSq SINE Alu 88 301 -12 258 116 0 0 chr1 8375493 8375536 -234288817 + (GA)n Simple_repeat Simple_repeat 2 44 0 469 244 85 18 chr1 8376368 8376532 -234287821 + L3 LINE CR1 1337 1511 -66 261 234 0 16 chr1 8379592 8379656 -234284697 + (GGGTG)n Simple_repeat Simple_repeat 1 63 0 2342 115 0 6 chr1 8380374 8380686 -234283667 - AluSg SINE Alu 0 310 1 5374 206 83 27 chr1 8382822 8383106 -234281247 + L1M4 LINE L1 3657 3923 -2223 2313 88 27 3 chr1 8383106 8383401 -234280952 + AluSq SINE Alu 1 302 -11 5374 206 83 27 chr1 8383401 8383697 -234280656 + L1M4 LINE L1 3923 4201 -1945 2098 150 0 0 chr1 8383697 8383991 -234280362 - AluJb SINE Alu -18 294 1 5374 206 83 27 chr1 8383991 8384741 -234279612 + L1M4 LINE L1 4201 5089 -1057 1569 175 6 48 chr1 8384741 8384923 -234279430 - AluJo SINE Alu -9 303 138 1957 122 0 7 chr1 8384923 8385193 -234279160 + AluSx SINE Alu 45 312 0 1569 175 6 48 chr1 8385193 8385325 -234279028 - AluJo SINE Alu -174 138 2 5374 206 83 27 chr1 8385325 8385526 -234278827 + L1M4 LINE L1 5089 5277 -869 1424 90 0 5 chr1 8385526 8385714 -234278639 - AluSg/x SINE Alu -10 300 114 1407 167 30 15 chr1 8385814 8386110 -234278243 + L1MB7 LINE L1 5742 6052 -112 2145 103 0 23 chr1 8386122 8386451 -234277902 + AluY SINE Alu 1 311 0 654 162 80 32 chr1 8386468 8386482 -234277871 + L1M4 LINE L1 5411 5423 -745 2396 78 0 36 chr1 8386482 8386791 -234277562 + AluY SINE Alu 1 298 -13 2056 110 0 38 chr1 8386791 8387110 -234277243 + AluSx SINE Alu 1 308 0 654 162 80 32 chr1 8387110 8387247 -234277106 + L1M4 LINE L1 5422 5566 -602 1210 305 106 24 chr1 8387247 8388065 -234276288 + L2 LINE L2 2375 3278 -35 269 240 211 10 chr1 8388072 8388176 -234276177 - MIR SINE MIR -62 146 22 2158 104 0 77 chr1 8389592 8389929 -234274424 + AluSx SINE Alu 1 311 -1 281 214 29 68 chr1 8391064 8391167 -234273186 + MIR SINE MIR 45 143 -65 777 128 8 0 chr1 8391550 8391667 -234272686 - FLAM_C SINE Alu -15 118 1 414 280 63 46 chr1 8391679 8391854 -234272499 - MER5A DNA MER1_type -6 183 6 2523 58 0 0 chr1 8393620 8393912 -234270441 - AluY SINE Alu -19 292 1 2290 121 0 0 chr1 8394231 8394529 -234269824 + AluSx SINE Alu 1 298 -14 2572 70 0 13 chr1 8394603 8394918 -234269435 + AluY SINE Alu 1 311 0 215 326 19 74 chr1 8395611 8395696 -234268657 - L2 LINE L2 -506 2808 2720 2077 113 49 0 chr1 8395696 8395980 -234268373 + AluSx SINE Alu 1 298 -14 215 326 19 74 chr1 8395980 8396164 -234268189 - L2 LINE L2 -594 2720 2554 2031 148 0 26 chr1 8397906 8398216 -234266137 - AluSx SINE Alu -9 303 2 2077 131 0 25 chr1 8398267 8398581 -234265772 - AluJo SINE Alu -6 306 1 349 120 0 0 chr1 8398645 8398720 -234265633 - AluSp SINE Alu 0 308 234 1187 141 11 5 chr1 8398720 8398905 -234265448 - AluSp SINE Alu -127 186 1 1137 124 0 30 chr1 8398907 8399098 -234265255 - AluSg/x SINE Alu 0 304 119 2305 99 0 34 chr1 8399110 8399432 -234264921 - AluY SINE Alu 0 311 1 1561 207 17 15 chr1 8399435 8399899 -234264454 - L1M4 LINE L1 -2803 3343 2879 2364 96 0 3 chr1 8399906 8400208 -234264145 - AluSc SINE Alu -7 302 2 2536 66 0 0 chr1 8400209 8400510 -234263843 - AluY SINE Alu -10 301 1 1435 141 52 83 chr1 8400510 8400675 -234263678 - L1MCa LINE L1 -6090 336 184 1736 174 3 10 chr1 8400675 8400973 -234263380 - AluJb SINE Alu -16 296 1 1435 141 52 83 chr1 8400973 8401134 -234263219 - L1MCa LINE L1 -6242 184 20 2436 171 42 40 chr1 8401143 8401669 -234262684 - L1MB5 LINE L1 -41 6133 5607 362 149 0 27 chr1 8401686 8401760 -234262593 + (CCCCCT)n Simple_repeat Simple_repeat 6 77 0 1787 102 0 17 chr1 8401774 8402010 -234262343 - AluSx SINE Alu -32 280 49 268 207 115 23 chr1 8402010 8402086 -234262267 - L1MB5 LINE L1 -553 5621 5535 194 286 0 62 chr1 8402127 8402212 -234262141 - L3 LINE CR1 -352 1225 1147 1619 177 13 33 chr1 8402212 8402517 -234261836 - AluJo SINE Alu -13 299 1 194 286 0 62 chr1 8402517 8402543 -234261810 - L3 LINE CR1 -430 1147 1121 373 200 32 42 chr1 8402572 8402667 -234261686 - FLAM_A SINE Alu -4 129 36 458 338 143 44 chr1 8402797 8403164 -234261189 - L3 LINE CR1 -635 942 520 2480 55 3 29 chr1 8403164 8403474 -234260879 - AluY SINE Alu -9 302 1 458 338 143 44 chr1 8403474 8403559 -234260794 - L3 LINE CR1 -1057 520 445 2140 114 20 3 chr1 8403579 8403885 -234260468 - AluSx SINE Alu -1 311 1 1814 143 7 36 chr1 8403890 8404197 -234260156 - AluJb SINE Alu -14 298 1 2480 81 0 0 chr1 8404403 8404701 -234259652 + AluSp SINE Alu 1 298 -15 2076 142 0 0 chr1 8405260 8405548 -234258805 + AluSx SINE Alu 1 288 -24 2373 94 0 3 chr1 8406556 8406853 -234257500 + AluSx SINE Alu 1 296 -16 213 65 0 0 chr1 8407646 8407677 -234256676 + (TTG)n Simple_repeat Simple_repeat 2 32 0 706 127 8 34 chr1 8407684 8407802 -234256551 - AluSg/x SINE Alu -28 282 168 247 235 26 52 chr1 8407810 8407925 -234256428 - AluSp SINE Alu -108 195 84 1736 148 25 21 chr1 8408240 8408523 -234255830 - AluJb SINE Alu -28 284 1 1431 229 23 12 chr1 8408857 8409202 -234255151 - L2 LINE L2 -562 2752 2404 255 271 0 2 chr1 8409202 8409262 -234255091 + AluSg/x SINE Alu 135 186 -116 * 502 137 0 0 chr1 8409259 8409332 -234255021 - 7SK RNA RNA 0 193 121 736 142 0 16 chr1 8409369 8409496 -234254857 - 7SK RNA RNA -68 125 1 904 158 0 0 chr1 8409496 8409629 -234254724 + FRAM SINE Alu 34 166 -10 548 222 23 34 chr1 8409638 8409814 -234254539 - L2 LINE L2 -928 2386 2213 1319 214 34 34 chr1 8409814 8410137 -234254216 - MLT1B LTR MaLR 0 390 68 1911 164 31 0 chr1 8410761 8411053 -234253300 + AluJb SINE Alu 1 301 -11 2120 112 20 3 chr1 8411102 8411396 -234252957 - AluSg SINE Alu -11 299 1 2118 127 7 0 chr1 8411540 8411863 -234252490 - AluSx SINE Alu 0 325 1 674 200 0 0 chr1 8412143 8412268 -234252085 + FRAM SINE Alu 9 133 -43 507 130 176 0 chr1 8412418 8412526 -234251827 - AluJo SINE Alu -178 134 8 2541 57 0 3 chr1 8412541 8412842 -234251511 - AluSg SINE Alu -10 300 1 21 36 0 0 chr1 8414534 8414562 -234249791 + AT_rich Low_complexity Low_complexity 1 28 0 2334 92 0 16 chr1 8414597 8414900 -234249453 + AluSx SINE Alu 1 298 -14 2506 68 3 0 chr1 8415017 8415313 -234249040 + AluSc SINE Alu 1 297 -12 2090 141 16 0 chr1 8415319 8415624 -234248729 + AluSx SINE Alu 1 310 -2 249 292 299 0 chr1 8415685 8415829 -234248524 - L2 LINE L2 -214 3058 2872 1019 66 8 0 chr1 8416193 8416314 -234248039 + AluY SINE Alu 2 123 -188 1906 49 0 13 chr1 8416330 8416555 -234247798 + AluY SINE Alu 1 222 -89 1822 180 0 0 chr1 8417477 8417766 -234246587 - AluSx SINE Alu -23 289 1 386 311 114 60 chr1 8417771 8417951 -234246402 + L1M4 LINE L1 4607 4776 -1370 1411 113 141 100 chr1 8417951 8418242 -234246111 + AluSg SINE Alu 1 303 -7 1854 148 58 0 chr1 8418242 8418519 -234245834 + AluSx SINE Alu 1 294 -18 386 311 114 60 chr1 8418519 8418932 -234245421 + L1M4 LINE L1 4775 5233 -913 636 129 11 0 chr1 8418945 8419038 -234245315 + AluJb SINE Alu 195 288 -24 1779 170 25 0 chr1 8419142 8419425 -234244928 + AluJb SINE Alu 1 290 -22 2000 147 0 19 chr1 8419731 8420043 -234244310 - AluJo SINE Alu -6 306 1 1784 124 84 7 chr1 8420046 8420188 -234244165 - AluSx SINE Alu -17 295 165 2471 76 3 0 chr1 8420188 8420491 -234243862 - AluY SINE Alu -7 304 1 1784 124 84 7 chr1 8420491 8420622 -234243731 - AluSx SINE Alu -147 165 1 1136 53 0 8 chr1 8420622 8420755 -234243598 - AluY SINE Alu -179 132 1 728 173 15 8 chr1 8420785 8420918 -234243435 + AluJo SINE Alu 3 136 -176 2355 101 3 0 chr1 8421459 8421756 -234242597 - AluSx SINE Alu -14 298 1 2209 123 7 0 chr1 8422146 8422456 -234241897 - AluSx SINE Alu 0 312 1 637 126 0 0 chr1 8422461 8422556 -234241797 - FLAM_C SINE Alu -14 129 35 696 252 31 78 chr1 8423271 8423352 -234241001 + MIR SINE MIR 7 90 -172 2129 130 7 10 chr1 8423352 8423659 -234240694 - AluSx SINE Alu -6 306 1 696 252 31 78 chr1 8423659 8423670 -234240683 + MIR SINE MIR 90 100 -162 1670 189 19 3 chr1 8423670 8423977 -234240376 - AluJb SINE Alu 0 312 1 696 252 31 78 chr1 8423977 8424141 -234240212 + MIR SINE MIR 100 252 -10 216 97 0 0 chr1 8424286 8424317 -234240036 + (TA)n Simple_repeat Simple_repeat 2 32 0 2457 73 0 13 chr1 8424317 8424631 -234239722 - AluY SINE Alu -1 310 1 2595 75 0 0 chr1 8424892 8425200 -234239153 - AluSq SINE Alu -5 308 1 225 342 79 0 chr1 8426069 8426145 -234238208 + MIR SINE MIR 77 158 -104 2295 107 0 0 chr1 8431321 8431612 -234232741 + AluSx SINE Alu 1 291 -21 481 284 98 42 chr1 8431827 8432091 -234232262 + L2 LINE L2 3035 3313 0 2213 124 3 0 chr1 8432209 8432515 -234231838 - AluSx SINE Alu -5 307 1 877 175 0 0 chr1 8432579 8432722 -234231631 + FLAM_C SINE Alu 1 143 0 2668 44 0 25 chr1 8433659 8433975 -234230378 + AluY SINE Alu 1 308 -3 2460 100 0 0 chr1 8434126 8434435 -234229918 + AluSc SINE Alu 1 309 0 2067 147 0 10 chr1 8434443 8434749 -234229604 + AluJb SINE Alu 1 303 -9 2472 70 3 3 chr1 8435125 8435423 -234228930 + AluSp SINE Alu 1 298 -15 669 205 0 0 chr1 8435550 8435667 -234228686 - FLAM_C SINE Alu -25 118 2 2299 96 3 3 chr1 8435806 8436098 -234228255 + AluSp SINE Alu 1 292 -21 415 136 0 0 chr1 8436109 8436175 -234228178 + Alu SINE Alu 236 301 -11 3242 139 20 55 chr1 8436211 8436808 -234227545 - L1MB7 LINE L1 0 6184 5610 2258 103 3 0 chr1 8436808 8437098 -234227255 - AluSx SINE Alu -21 291 1 3242 139 20 55 chr1 8437098 8437154 -234227199 - L1MB7 LINE L1 -574 5610 5554 1773 165 38 3 chr1 8437832 8438123 -234226230 - AluJo SINE Alu -11 301 1 1553 187 0 15 chr1 8438361 8438623 -234225730 - AluJb SINE Alu -54 258 1 2358 92 0 10 chr1 8438628 8438933 -234225420 - AluY SINE Alu -9 302 1 425 147 27 0 chr1 8439142 8439217 -234225136 - MER45A DNA AcHobo 0 178 102 2028 161 0 3 chr1 8439224 8439535 -234224818 - AluSx SINE Alu -2 310 1 231 169 144 144 chr1 8439535 8439569 -234224784 - MER45A DNA AcHobo -60 118 85 2153 124 3 3 chr1 8439569 8439868 -234224485 - AluSx SINE Alu -13 299 1 2412 91 3 7 chr1 8439877 8440186 -234224167 - AluSp SINE Alu -5 308 1 231 169 144 144 chr1 8440186 8440259 -234224094 - MER45A DNA AcHobo -100 78 1 2264 119 0 0 chr1 8440593 8440895 -234223458 - AluY SINE Alu -9 302 1 2169 110 0 0 chr1 8441923 8442242 -234222111 - AluSx SINE Alu 0 312 13 2124 118 3 0 chr1 8442254 8442542 -234221811 - AluSx SINE Alu -13 299 11 222 37 0 0 chr1 8442546 8442573 -234221780 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 698 159 61 12 chr1 8442779 8442942 -234221411 + L1MB7 LINE L1 6004 6174 -10 689 167 9 0 chr1 8443018 8443132 -234221221 + AluJb SINE Alu 2 116 -196 2585 59 10 0 chr1 8443132 8443435 -234220918 - AluY SINE Alu -5 306 1 1855 96 65 55 chr1 8443451 8443595 -234220758 - AluSx SINE Alu -16 296 155 1833 100 0 41 chr1 8443595 8443864 -234220489 - AluSx SINE Alu -11 301 44 1855 96 65 55 chr1 8443864 8444012 -234220341 - AluSx SINE Alu -157 155 1 251 301 142 9 chr1 8444753 8444866 -234219487 + MIR SINE MIR 32 159 -103 2140 137 0 3 chr1 8444866 8445166 -234219187 - AluSx SINE Alu -13 299 1 294 282 168 24 chr1 8446155 8446364 -234217989 - MIR SINE MIR -12 250 12 285 197 127 0 chr1 8447331 8447402 -234216951 + MIR SINE MIR 93 172 -90 2472 70 3 3 chr1 8448277 8448575 -234215778 - AluSp SINE Alu -15 298 1 2058 148 0 10 chr1 8448951 8449256 -234215097 - AluJb SINE Alu -10 302 1 2355 109 3 0 chr1 8449264 8449575 -234214778 - AluSx SINE Alu 0 312 1 245 271 12 59 chr1 8450103 8450188 -234214165 + MIR3 SINE MIR 4 84 -124 533 229 70 75 chr1 8450253 8450369 -234213984 + MIR SINE MIR 46 161 -101 2260 79 11 4 chr1 8450369 8450648 -234213705 + AluSq SINE Alu 1 281 -32 216 0 0 0 chr1 8450651 8450675 -234213678 + (TAA)n Simple_repeat Simple_repeat 3 26 0 533 229 70 75 chr1 8450675 8450755 -234213598 + MIR SINE MIR 163 245 -17 2512 73 0 13 chr1 8450825 8451139 -234213214 + AluY SINE Alu 1 310 -1 2334 112 6 6 chr1 8451144 8451457 -234212896 + AluSp SINE Alu 1 313 0 2175 101 7 32 chr1 8451472 8451780 -234212573 + AluSx SINE Alu 5 304 -8 239 344 86 8 chr1 8451862 8451990 -234212363 - MIR SINE MIR -46 216 79 1868 158 0 24 chr1 8451990 8452287 -234212066 + AluJo SINE Alu 1 290 -22 2208 124 0 0 chr1 8452650 8452940 -234211413 - AluSx SINE Alu -22 290 1 582 250 29 0 chr1 8452947 8453087 -234211266 - MIR SINE MIR -105 157 14 420 219 187 0 chr1 8453432 8453555 -234210798 + MIR SINE MIR 57 202 -60 2287 125 3 0 chr1 8453555 8453860 -234210493 + AluSx SINE Alu 1 306 -6 1232 99 0 29 chr1 8455338 8455538 -234208815 + AluSg/x SINE Alu 127 310 0 654 162 80 32 chr1 8455555 8455569 -234208784 + L1M4 LINE L1 5411 5423 -745 2396 78 0 36 chr1 8455569 8455878 -234208475 + AluY SINE Alu 1 298 -13 2056 110 0 38 chr1 8455878 8456197 -234208156 + AluSx SINE Alu 1 308 0 654 162 80 32 chr1 8456197 8456334 -234208019 + L1M4 LINE L1 5422 5566 -602 1168 304 109 24 chr1 8456334 8457151 -234207202 + L2 LINE L2 2375 3278 -35 269 240 211 10 chr1 8457158 8457262 -234207091 - MIR SINE MIR -62 146 22 2167 104 0 74 chr1 8458677 8459014 -234205339 + AluSx SINE Alu 1 312 0 281 214 29 68 chr1 8460148 8460251 -234204102 + MIR SINE MIR 45 143 -65 766 137 8 0 chr1 8460634 8460751 -234203602 - FLAM_C SINE Alu -15 118 1 414 280 63 46 chr1 8460763 8460938 -234203415 - MER5A DNA MER1_type -6 183 6 2515 58 0 0 chr1 8462703 8462995 -234201358 - AluY SINE Alu -19 292 1 2290 121 0 0 chr1 8463314 8463612 -234200741 + AluSx SINE Alu 1 298 -14 2572 70 0 13 chr1 8463686 8464001 -234200352 + AluY SINE Alu 1 311 0 215 326 19 74 chr1 8464693 8464778 -234199575 - L2 LINE L2 -506 2808 2720 2077 113 49 0 chr1 8464778 8465062 -234199291 + AluSx SINE Alu 1 298 -14 215 326 19 74 chr1 8465062 8465246 -234199107 - L2 LINE L2 -594 2720 2554 2031 148 0 26 chr1 8466990 8467300 -234197053 - AluSx SINE Alu -9 303 2 2077 131 0 25 chr1 8467351 8467665 -234196688 - AluJo SINE Alu -6 306 1 349 120 0 0 chr1 8467729 8467804 -234196549 - AluSx SINE Alu 0 308 234 1362 140 0 0 chr1 8467804 8467990 -234196363 - AluSx SINE Alu -126 186 1 225 342 79 0 chr1 8468858 8468934 -234195419 + MIR SINE MIR 77 158 -104 343 275 167 28 chr1 8472020 8472108 -234192245 + L2 LINE L2 2607 2681 -633 1681 139 0 16 chr1 8472108 8472366 -234191987 - AluJo SINE Alu -21 291 38 343 275 167 28 chr1 8472366 8472601 -234191752 + L2 LINE L2 2681 2975 -339 1501 174 34 19 chr1 8472652 8472916 -234191437 - AluJo SINE Alu -41 271 4 2151 135 3 3 chr1 8474699 8475011 -234189342 + AluSx SINE Alu 1 312 0 438 20 0 0 chr1 8475206 8475257 -234189096 + (CA)n Simple_repeat Simple_repeat 2 52 0 2307 92 0 3 chr1 8477283 8477575 -234186778 + AluSg SINE Alu 2 292 -18 24 0 0 0 chr1 8478270 8478294 -234186059 + AT_rich Low_complexity Low_complexity 1 24 0 5210 65 7 7 chr1 8478332 8479036 -234185317 - L1PA8 LINE L1 -3 6169 5466 210 197 0 0 chr1 8479058 8479103 -234185250 - MIR SINE MIR -52 156 111 255 316 68 8 chr1 8479156 8479273 -234185080 + MIR3 SINE MIR 45 168 -40 666 167 78 111 chr1 8479302 8479402 -234184951 + MER45A DNA AcHobo 2 104 -1477 1732 180 42 0 chr1 8479402 8479691 -234184662 - AluJo SINE Alu -11 301 1 2445 87 3 3 chr1 8479697 8480006 -234184347 - AluSq SINE Alu -4 309 1 666 167 78 111 chr1 8480006 8480078 -234184275 + MER45A DNA AcHobo 109 175 -3 224 279 154 22 chr1 8480604 8480740 -234183613 - L2 LINE L2 -9 3263 3110 207 289 18 53 chr1 8482295 8482409 -234181944 + G-rich Low_complexity Low_complexity 2 111 0 400 298 183 30 chr1 8483356 8483695 -234180658 - L2 LINE L2 -579 2735 2345 394 206 84 38 chr1 8483672 8483803 -234180550 + MIR SINE MIR 71 207 -55 * 1421 161 5 0 chr1 8483814 8484025 -234180328 + AluJb SINE Alu 87 298 -14 2158 107 41 0 chr1 8484027 8484318 -234180035 + AluSp SINE Alu 1 303 -10 231 227 0 0 chr1 8484333 8484377 -234179976 + MIR SINE MIR 218 261 -1 758 211 47 26 chr1 8484635 8484825 -234179528 - MER20 DNA MER1_type -25 194 1 202 304 157 44 chr1 8484854 8485065 -234179288 - MIR3 SINE MIR -24 238 1 522 254 71 3 chr1 8485581 8485750 -234178603 - MIR SINE MIR -63 145 13 2186 106 41 0 chr1 8485800 8486092 -234178261 + AluSc SINE Alu 1 304 -5 390 149 14 14 chr1 8486200 8486274 -234178079 - AluSg/x SINE Alu -12 290 217 497 213 39 8 chr1 8486405 8486532 -234177821 - AluSq/x SINE Alu -181 131 1 859 107 47 54 chr1 8486555 8486704 -234177649 + AluJb SINE Alu 1 148 -164 1916 66 125 15 chr1 8486704 8486976 -234177377 + AluSg SINE Alu 1 302 -8 473 171 152 0 chr1 8487670 8487775 -234176578 + MER20 DNA MER1_type 3 123 -96 231 272 168 8 chr1 8487866 8487991 -234176362 + L2 LINE L2 2908 3052 -220 676 207 0 0 chr1 8490065 8490186 -234174167 + AluJo/FLAM SINE Alu 2 122 -190 1143 114 0 45 chr1 8490186 8490362 -234173991 - AluSg/x SINE Alu 0 310 143 1929 178 0 0 chr1 8490479 8490788 -234173565 - AluSx SINE Alu -3 309 1 386 311 114 60 chr1 8490793 8490973 -234173380 + L1M4 LINE L1 4607 4776 -1370 1401 114 137 107 chr1 8490973 8491272 -234173081 + AluSg SINE Alu 1 308 -2 1854 148 58 0 chr1 8491272 8491549 -234172804 + AluSx SINE Alu 1 294 -18 386 311 114 60 chr1 8491549 8491962 -234172391 + L1M4 LINE L1 4775 5233 -913 636 129 11 0 chr1 8491975 8492068 -234172285 + AluJb SINE Alu 195 288 -24 1779 170 25 0 chr1 8492172 8492455 -234171898 + AluJb SINE Alu 1 290 -22 2026 148 0 16 chr1 8492761 8493071 -234171282 - AluJo SINE Alu -7 305 1 1762 128 84 7 chr1 8493074 8493216 -234171137 - AluSx SINE Alu -17 295 165 2471 76 3 0 chr1 8493216 8493519 -234170834 - AluY SINE Alu -7 304 1 1762 128 84 7 chr1 8493519 8493650 -234170703 - AluSx SINE Alu -147 165 1 1136 53 0 8 chr1 8493650 8493783 -234170570 - AluY SINE Alu -179 132 1 728 173 15 8 chr1 8493813 8493946 -234170407 + AluJo SINE Alu 3 136 -176 2346 101 3 0 chr1 8494487 8494783 -234169570 - AluSx SINE Alu -15 297 1 2192 126 7 0 chr1 8495173 8495483 -234168870 - AluSx SINE Alu 0 312 1 637 126 0 0 chr1 8495488 8495583 -234168770 - FLAM_C SINE Alu -14 129 35 718 249 31 74 chr1 8496298 8496379 -234167974 + MIR SINE MIR 7 90 -172 2158 127 7 10 chr1 8496379 8496686 -234167667 - AluSx SINE Alu -6 306 1 1813 187 10 3 chr1 8496696 8497006 -234167347 - AluJb SINE Alu 0 312 1 718 249 31 74 chr1 8497006 8497170 -234167183 + MIR SINE MIR 99 252 -10 231 114 0 0 chr1 8497315 8497350 -234167003 + (TA)n Simple_repeat Simple_repeat 1 35 0 2383 75 0 13 chr1 8497350 8497655 -234166698 - AluY SINE Alu -10 301 1 2463 60 0 80 chr1 8497916 8498252 -234166101 - AluSq SINE Alu -4 309 1 2186 108 0 20 chr1 8498264 8498569 -234165784 - AluSq SINE Alu -14 299 1 1228 163 8 67 chr1 8498980 8499060 -234165293 + AluJo SINE Alu 63 146 -166 2400 82 3 10 chr1 8499060 8499388 -234164965 + AluY SINE Alu 1 311 0 1228 163 8 67 chr1 8499388 8499547 -234164806 + AluJo SINE Alu 146 288 -24 2190 92 7 3 chr1 8499603 8499909 -234164444 + AluSq SINE Alu 1 307 0 507 241 152 7 chr1 8500644 8500789 -234163564 - MIR3 SINE MIR -11 197 32 2909 138 23 32 chr1 8501422 8501728 -234162625 - L1MB5 LINE L1 -3 6171 5871 2049 125 44 7 chr1 8501728 8502024 -234162329 - AluSq SINE Alu -4 309 3 2909 138 23 32 chr1 8502024 8502273 -234162080 - L1MB5 LINE L1 -303 5871 5621 2216 91 14 11 chr1 8502273 8502590 -234161763 - AluSp SINE Alu 0 318 1 2125 119 31 0 chr1 8502647 8502941 -234161412 + AluSg SINE Alu 1 303 -7 1692 168 31 3 chr1 8503020 8503306 -234161047 + AluSx SINE Alu 2 295 -17 417 271 43 15 chr1 8503450 8503623 -234160730 + MIR SINE MIR 42 213 -49 2451 64 27 0 chr1 8504434 8504729 -234159624 + AluY SINE Alu 1 303 -8 2254 100 4 0 chr1 8504736 8505016 -234159337 + AluSg SINE Alu 9 289 -21 23 0 0 0 chr1 8505183 8505206 -234159147 + AT_rich Low_complexity Low_complexity 1 23 0 2012 67 49 53 chr1 8505278 8505585 -234158768 - AluSp SINE Alu 0 308 3 276 170 0 19 chr1 8505910 8505963 -234158390 + AluJb SINE Alu 85 136 -166 2325 84 0 0 chr1 8505963 8506277 -234158076 + AluY SINE Alu 1 314 0 1079 76 0 0 chr1 8506432 8506563 -234157790 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 8506566 8506874 -234157479 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 8506894 8506916 -234157437 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 8506989 8507097 -234157256 + FLAM_A SINE Alu 35 142 0 2000 127 48 3 chr1 8507106 8507397 -234156956 + AluSx SINE Alu 1 304 -8 2250 119 0 3 chr1 8508508 8508810 -234155543 + AluSx SINE Alu 1 301 -11 899 175 121 0 chr1 8508810 8508976 -234155377 + AluYb8 SINE Alu 1 186 -132 2228 119 3 7 chr1 8511000 8511302 -234153051 - AluSx SINE Alu -6 306 6 276 170 0 19 chr1 8511629 8511682 -234152671 + AluJb SINE Alu 85 136 -166 2439 93 0 0 chr1 8511682 8511992 -234152361 + AluY SINE Alu 1 310 -1 1079 76 0 0 chr1 8512150 8512281 -234152072 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 8512284 8512592 -234151761 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 8512612 8512634 -234151719 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 8512707 8512815 -234151538 + FLAM_A SINE Alu 35 142 0 1985 131 48 3 chr1 8512826 8513117 -234151236 + AluSx SINE Alu 1 304 -8 2250 119 0 3 chr1 8514228 8514530 -234149823 + AluSx SINE Alu 1 301 -11 2074 115 0 36 chr1 8514530 8514644 -234149709 + AluSc SINE Alu 1 118 -191 2356 74 0 27 chr1 8514644 8514941 -234149412 + AluSc SINE Alu 1 289 -20 2074 115 0 36 chr1 8514941 8515131 -234149222 + AluSc SINE Alu 118 294 -15 1780 153 0 80 chr1 8515275 8515601 -234148752 + AluJb SINE Alu 1 300 -12 1752 148 3 68 chr1 8515985 8516115 -234148238 + AluSx SINE Alu 7 144 -168 2397 89 3 3 chr1 8516115 8516417 -234147936 + AluSx SINE Alu 1 302 -10 1752 148 3 68 chr1 8516417 8516610 -234147743 + AluSx SINE Alu 144 309 -3 972 154 49 6 chr1 8516610 8516772 -234147581 + AluSq SINE Alu 134 302 -11 2506 46 0 0 chr1 8516944 8517266 -234147087 - AluY SINE Alu 0 322 1 201 158 0 0 chr1 8517455 8517493 -234146860 + A-rich Low_complexity Low_complexity 1 38 0 242 127 0 175 chr1 8517493 8517556 -234146797 + MLT1H LTR MaLR 498 549 0 574 346 72 33 chr1 8517559 8518163 -234146190 + L2 LINE L2 2650 3270 -2 1045 175 0 0 chr1 8518524 8518690 -234145663 + AluJb SINE Alu 134 299 -13 2311 106 6 3 chr1 8518732 8519043 -234145310 + AluSx SINE Alu 1 312 0 327 146 0 0 chr1 8519427 8519482 -234144871 + (TC)n Simple_repeat Simple_repeat 2 56 0 2183 90 11 4 chr1 8519979 8520281 -234144072 - AluSg SINE Alu 0 304 1 29 0 0 0 chr1 8520283 8520312 -234144041 + AT_rich Low_complexity Low_complexity 1 29 0 1325 134 15 0 chr1 8520332 8520534 -234143819 - AluSg/x SINE Alu -3 309 105 1243 138 5 5 chr1 8520640 8520829 -234143524 + AluSg/x SINE Alu 112 300 -12 1355 191 7 28 chr1 8521870 8521988 -234142365 + AluJb SINE Alu 21 140 -172 2201 120 0 13 chr1 8521988 8522288 -234142065 + AluSx SINE Alu 1 296 -16 1355 191 7 28 chr1 8522288 8522452 -234141901 + AluJb SINE Alu 140 297 -15 2347 109 6 3 chr1 8522554 8522865 -234141488 + AluSx SINE Alu 1 312 0 2197 113 3 3 chr1 8522927 8523220 -234141133 + AluSx SINE Alu 7 299 -13 967 320 106 18 chr1 8523576 8524132 -234140221 - L2 LINE L2 -338 2976 2372 2263 62 11 0 chr1 8524137 8524413 -234139940 - AluSp SINE Alu -9 304 26 285 270 0 20 chr1 8525073 8525173 -234139180 + MLT1H LTR MaLR 368 465 -84 3503 85 4 2 chr1 8525424 8525895 -234138458 + LTR8 LTR ERV1 1 472 -219 8223 42 4 1 chr1 8525995 8527058 -234137295 - L1P LINE L1 -794 5352 4287 696 332 174 31 chr1 8527553 8528370 -234135983 + L3 LINE CR1 211 1144 -433 354 329 55 24 chr1 8528679 8528843 -234135510 - L1M LINE L1 -2385 5423 5255 335 264 127 10 chr1 8529065 8529262 -234135091 - L1M4 LINE L1 -1437 4709 4490 2028 128 0 24 chr1 8529752 8530048 -234134305 + AluSx SINE Alu 1 289 -23 253 191 191 0 chr1 8530876 8530960 -234133393 + MIR3 SINE MIR 108 207 -1 410 179 51 90 chr1 8533607 8533763 -234130590 - MER97b DNA MER1_type? -903 150 1 2230 121 52 100 chr1 8533929 8534391 -234129962 + Tigger3(Golem) DNA MER2_type 2577 3016 -13 266 203 34 0 chr1 8534401 8534460 -234129893 + LTR67 LTR ERVL 114 174 -383 1440 151 95 48 chr1 8534469 8534827 -234129526 - THE1C LTR MaLR 0 375 1 286 228 43 11 chr1 8535002 8535094 -234129259 + LTR67 LTR ERVL 439 533 -24 1694 117 117 0 chr1 8536386 8536516 -234127837 + AluSx SINE Alu 1 114 -198 1992 153 0 0 chr1 8536516 8536804 -234127549 + AluSg SINE Alu 9 296 -14 1694 117 117 0 chr1 8536804 8536922 -234127431 + AluSx SINE Alu 114 278 -34 660 195 17 0 chr1 8536926 8537100 -234127253 + GA-rich Low_complexity Low_complexity 4 180 0 273 167 0 21 chr1 8537228 8537276 -234127077 - Alu SINE Alu -252 48 2 2172 122 0 20 chr1 8537402 8537705 -234126648 - AluSx SINE Alu -15 297 1 1001 132 38 0 chr1 8538452 8538611 -234125742 - Tigger4(Zombi) DNA MER2_type -2566 165 1 2385 93 3 0 chr1 8538991 8539293 -234125060 - AluSp SINE Alu -10 303 1 2325 102 0 0 chr1 8540275 8540568 -234123785 + AluSx SINE Alu 1 293 -19 283 218 0 0 chr1 8540726 8540781 -234123572 + Tigger5 DNA MER2_type 3 57 -2266 822 168 0 0 chr1 8540848 8540973 -234123380 + FLAM_C SINE Alu 2 126 -7 2078 136 0 17 chr1 8540988 8541124 -234123229 + AluSx SINE Alu 1 138 -164 2348 94 0 16 chr1 8541124 8541261 -234123092 + AluSq SINE Alu 1 139 -174 2363 112 0 0 chr1 8541261 8541573 -234122780 + AluSq SINE Alu 1 312 -1 2348 94 0 16 chr1 8541573 8541744 -234122609 + AluSq SINE Alu 139 304 -9 2078 136 0 17 chr1 8541744 8541909 -234122444 + AluSx SINE Alu 138 297 -5 785 203 26 0 chr1 8541916 8542069 -234122284 + FRAM SINE Alu 5 161 -5 1173 208 32 70 chr1 8542544 8542857 -234121496 - AluSx SINE Alu 0 302 2 792 180 66 28 chr1 8543027 8543238 -234121115 - MER20 DNA MER1_type 0 219 1 1859 136 3 42 chr1 8543444 8543752 -234120601 + AluJb SINE Alu 1 296 -16 2463 88 0 19 chr1 8543910 8544228 -234120125 + AluSq SINE Alu 1 312 -1 257 343 59 29 chr1 8544787 8544889 -234119464 - L2 LINE L2 -42 3271 3167 2479 49 3 0 chr1 8544953 8545239 -234119114 - AluY SINE Alu -11 300 14 3317 145 35 88 chr1 8545269 8545524 -234118829 - L1MB3 LINE L1 0 6183 5916 1953 162 0 3 chr1 8545524 8545827 -234118526 + AluJb SINE Alu 1 302 -10 3317 145 35 88 chr1 8545827 8545840 -234118513 - L1MB3 LINE L1 -267 5916 5904 2123 128 17 0 chr1 8545840 8546128 -234118225 + AluSx SINE Alu 1 293 -19 2542 62 0 3 chr1 8546137 8546445 -234117908 + AluY SINE Alu 1 307 -4 3317 145 35 88 chr1 8546445 8546937 -234117416 - L1MB3 LINE L1 -287 5896 5453 348 266 66 49 chr1 8546985 8547211 -234117142 - L1MC5 LINE L1 -50 7911 7682 1964 162 3 3 chr1 8547248 8547556 -234116797 + AluJb SINE Alu 1 308 -4 225 188 47 47 chr1 8547556 8547632 -234116721 - L1MC5 LINE L1 -272 7689 7611 823 249 80 10 chr1 8547793 8548094 -234116259 - L1M4 LINE L1 -2096 4050 3729 2196 54 4 36 chr1 8548403 8548681 -234115672 + AluY SINE Alu 1 269 -42 531 138 0 129 chr1 8648841 8648886 -234015467 - L1MB5 LINE L1 0 6174 6125 243 0 0 0 chr1 8648886 8648913 -234015440 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2225 101 0 3 chr1 8648913 8649199 -234015154 - AluSq SINE Alu -28 285 1 531 138 0 129 chr1 8649199 8649268 -234015085 - L1MB5 LINE L1 -47 6127 6074 1898 125 0 83 chr1 8649300 8649612 -234014741 - AluSx SINE Alu -26 286 1 2021 143 3 3 chr1 8649968 8650275 -234014078 + AluSx SINE Alu 1 307 -5 1267 131 63 0 chr1 8651254 8651445 -234012908 + AluSg/x SINE Alu 93 295 -17 295 271 16 49 chr1 8651476 8651507 -234012846 + L1MC4 LINE L1 7924 7954 -88 2411 84 0 3 chr1 8651507 8651805 -234012548 + AluY SINE Alu 1 297 -14 295 271 16 49 chr1 8651805 8651895 -234012458 + L1MC4 LINE L1 7954 8041 -1 2210 120 0 16 chr1 8652246 8652563 -234011790 + AluSx SINE Alu 1 312 0 489 49 0 0 chr1 8653404 8653465 -234010888 - AluY SINE Alu -256 62 2 412 156 46 0 chr1 8653798 8653907 -234010446 + (TG)n Simple_repeat Simple_repeat 2 115 0 835 254 95 13 chr1 8654142 8654374 -234009979 + MLT1G1 LTR MaLR 2 252 -343 356 202 11 34 chr1 8654379 8654468 -234009885 + MLT1H LTR MaLR 463 549 0 849 257 108 33 chr1 8654497 8654975 -234009378 - L2 LINE L2 -19 3294 2779 802 168 0 126 chr1 8654980 8655170 -234009183 - FRAM SINE Alu 0 166 1 2046 114 13 25 chr1 8655193 8655508 -234008845 - AluSq SINE Alu -1 312 2 950 173 6 6 chr1 8655511 8655667 -234008686 - AluJb SINE Alu -22 290 135 2522 92 0 6 chr1 8655673 8655987 -234008366 - AluSx SINE Alu 0 312 1 1179 239 86 35 chr1 8655990 8656178 -234008175 - L2 LINE L2 -608 2706 2529 2293 101 0 0 chr1 8656178 8656474 -234007879 - AluSx SINE Alu -16 296 1 1179 239 86 35 chr1 8656474 8656741 -234007612 - L2 LINE L2 -785 2529 2228 184 236 67 34 chr1 8656981 8657022 -234007331 + MIR SINE MIR 159 197 -65 2615 54 0 0 chr1 8657022 8657319 -234007034 + AluY SINE Alu 1 297 -14 184 236 67 34 chr1 8657319 8657366 -234006987 + MIR SINE MIR 197 250 -12 2115 116 3 44 chr1 8657472 8657791 -234006562 + AluSx SINE Alu 1 306 -6 2256 104 0 0 chr1 8658589 8658878 -234005475 - AluSq SINE Alu -24 289 1 363 98 0 0 chr1 8658882 8658943 -234005410 + (TA)n Simple_repeat Simple_repeat 1 61 0 2300 79 10 3 chr1 8658943 8659235 -234005118 - AluSx SINE Alu -18 294 1 419 288 45 8 chr1 8662777 8662909 -234001444 + MIR SINE MIR 34 170 -92 240 167 71 0 chr1 8663160 8663202 -234001151 + MSTB LTR MaLR 382 426 0 3664 163 20 97 chr1 8663202 8663284 -234001069 + L1MB4 LINE L1 5221 5308 -872 2440 89 0 13 chr1 8663284 8663597 -234000756 + AluSc SINE Alu 1 309 0 3664 163 20 97 chr1 8663597 8664546 -233999807 + L1MB4 LINE L1 5308 6180 0 2510 45 0 0 chr1 8664670 8665001 -233999352 - AluY SINE Alu 0 311 1 2441 43 0 0 chr1 8665364 8665644 -233998709 - AluY SINE Alu -31 280 1 189 0 0 0 chr1 8665705 8665726 -233998627 + (A)n Simple_repeat Simple_repeat 1 21 0 2487 59 0 3 chr1 8666327 8666631 -233997722 - AluSq SINE Alu -10 303 1 2134 104 3 0 chr1 8666637 8666936 -233997417 - AluSg SINE Alu -10 300 1 2365 37 7 13 chr1 8667555 8667853 -233996500 - AluY SINE Alu -15 296 1 1650 159 97 0 chr1 8667955 8668245 -233996108 - MER7A DNA MER2_type -29 317 2 772 273 30 0 chr1 8668524 8668722 -233995631 + MIR SINE MIR 6 209 -53 207 100 0 0 chr1 8669138 8669168 -233995185 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 2048 105 0 3 chr1 8669168 8669443 -233994910 - AluSg SINE Alu -27 283 8 749 169 70 7 chr1 8669443 8669585 -233994768 - AluJb SINE Alu -25 287 137 2011 116 20 0 chr1 8671024 8671317 -233993036 - AluSx SINE Alu -13 299 1 2425 68 0 0 chr1 8672130 8672438 -233991915 - AluY SINE Alu -2 309 2 2226 87 7 0 chr1 8673162 8673460 -233990893 + AluSc SINE Alu 2 301 -8 2166 74 11 0 chr1 8673575 8673892 -233990461 - AluSp SINE Alu 0 320 1 2055 119 0 14 chr1 8673909 8674067 -233990286 - AluSx SINE Alu -21 291 137 2153 109 0 10 chr1 8674067 8674078 -233990275 - AluSx SINE Alu -3 309 299 270 0 0 0 chr1 8674078 8674108 -233990245 + (TG)n Simple_repeat Simple_repeat 1 30 0 2153 109 0 10 chr1 8674108 8674408 -233989945 - AluSx SINE Alu -13 299 1 2055 119 0 14 chr1 8674408 8674544 -233989809 - AluSx SINE Alu -175 137 1 1587 268 199 11 chr1 8675109 8676011 -233988342 - L2 LINE L2 -55 3258 2179 293 302 19 99 chr1 8676011 8676227 -233988126 + MER20B DNA MER1_type 19 218 -1 266 222 81 30 chr1 8676228 8676327 -233988026 - L2 LINE L2 -1131 2183 2080 741 200 7 7 chr1 8676536 8676676 -233987677 + FRAM SINE Alu 1 140 -36 2061 124 0 22 chr1 8676676 8676991 -233987362 - AluSx SINE Alu -4 308 1 32 33 0 33 chr1 8677004 8677023 -233987330 + AT_rich Low_complexity Low_complexity 1 19 -40 1405 130 188 0 chr1 8677023 8677286 -233987067 + AluSx SINE Alu 1 308 0 32 33 0 33 chr1 8677286 8677326 -233987027 + AT_rich Low_complexity Low_complexity 19 59 0 2205 85 0 3 chr1 8677367 8677662 -233986691 - AluSc SINE Alu -15 294 1 726 143 0 0 chr1 8677676 8677781 -233986572 - U6 snRNA snRNA -1 106 2 811 179 21 74 chr1 8677782 8677972 -233986381 + AluJo SINE Alu 102 281 -31 32 43 0 0 chr1 8677972 8678018 -233986335 + AT_rich Low_complexity Low_complexity 1 46 0 1399 96 50 29 chr1 8678187 8678427 -233985926 + L1PA16 LINE L1 5922 6166 0 1846 120 0 18 chr1 8678444 8678579 -233985774 + AluSq SINE Alu 3 139 -174 2142 108 0 0 chr1 8678579 8678884 -233985469 + AluY SINE Alu 3 307 -4 1846 120 0 18 chr1 8678884 8679031 -233985322 + AluSq SINE Alu 139 280 -33 531 247 74 11 chr1 8679041 8679231 -233985122 - L1MEd LINE L1 -5016 1103 902 1942 143 7 0 chr1 8679231 8679545 -233984808 - AluSx SINE Alu 0 316 1 1949 122 37 3 chr1 8679556 8679852 -233984501 - AluSx SINE Alu -4 308 3 1960 133 3 0 chr1 8680233 8680527 -233983826 + AluSx SINE Alu 1 295 -17 784 124 0 0 chr1 8680987 8681100 -233983253 + AluSg/x SINE Alu 183 295 -17 1175 128 0 15 chr1 8681101 8681296 -233983057 + AluSq SINE Alu 122 313 0 1898 138 14 0 chr1 8682324 8682614 -233981739 - AluJo SINE Alu -18 294 1 2191 41 0 44 chr1 8683571 8683888 -233980465 - AluY SINE Alu 0 304 1 2305 93 0 3 chr1 8684241 8684552 -233979801 - AluSx SINE Alu -2 310 1 2101 90 4 0 chr1 8685480 8685777 -233978576 - AluSc SINE Alu 0 302 5 1420 159 10 68 chr1 8685782 8685958 -233978395 - AluJb SINE Alu -11 301 149 1941 123 3 20 chr1 8685958 8686250 -233978103 + AluSx SINE Alu 1 287 -25 1420 159 10 68 chr1 8686250 8686381 -233977972 - AluJb SINE Alu -163 149 12 1743 160 0 0 chr1 8686761 8687049 -233977304 + AluJb SINE Alu 23 310 -2 2065 113 0 22 chr1 8687227 8687538 -233976815 - AluSx SINE Alu -8 304 1 565 238 225 0 chr1 8687822 8687982 -233976371 + MIR SINE MIR 67 262 0 273 75 0 0 chr1 8688154 8688194 -233976159 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 8688193 8688214 -233976139 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 413 213 57 41 chr1 8688291 8688413 -233975940 - L1ME4a LINE L1 -22 6099 5976 1977 120 0 13 chr1 8688422 8688723 -233975630 - AluSq SINE Alu -16 297 1 230 272 140 0 chr1 8688730 8688844 -233975509 - L1ME4a LINE L1 -376 5745 5616 241 191 0 0 chr1 8688847 8688889 -233975464 + LTR50 LTR ERVL 7 48 -747 1408 126 39 9 chr1 8688906 8689005 -233975348 - AluSx SINE Alu -75 237 142 2076 99 0 14 chr1 8689005 8689185 -233975168 - AluSc SINE Alu 0 311 135 2188 86 7 0 chr1 8689185 8689477 -233974876 - AluSp SINE Alu -19 294 1 2076 99 0 14 chr1 8689477 8689611 -233974742 - AluSc SINE Alu -176 135 1 1408 126 39 9 chr1 8689611 8689740 -233974613 - AluSx SINE Alu -170 142 1 1710 156 54 0 chr1 8689760 8690055 -233974298 - AluJo SINE Alu -1 311 1 383 275 111 2 chr1 8690153 8690498 -233973855 + LTR50 LTR ERVL 108 654 -141 1993 120 3 3 chr1 8690499 8690799 -233973554 - AluSx SINE Alu -12 300 1 300 280 27 0 chr1 8690801 8690876 -233973477 - L1ME4a LINE L1 -506 5615 5539 1856 96 25 32 chr1 8691018 8691336 -233973017 - AluSg SINE Alu 0 318 3 189 138 0 0 chr1 8691337 8691366 -233972987 - MER5A DNA MER1_type -111 78 50 2469 44 0 7 chr1 8692138 8692435 -233971918 - AluY SINE Alu -16 295 1 2198 101 0 3 chr1 8692437 8692735 -233971618 - AluSc SINE Alu -12 297 1 401 127 0 0 chr1 8693102 8693157 -233971196 - AluSp/q SINE Alu -38 265 211 518 205 137 0 chr1 8693359 8693476 -233970877 - AluJo SINE Alu -178 134 2 1887 144 0 22 chr1 8694376 8694695 -233969658 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 8694747 8694770 -233969583 + (G)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr1 8695169 8695199 -233969154 + AT_rich Low_complexity Low_complexity 1 30 0 2002 106 0 17 chr1 8695592 8695885 -233968468 - AluSx SINE Alu -19 293 6 193 328 62 0 chr1 8696468 8696532 -233967821 + MIR SINE MIR 37 104 -158 2179 114 0 0 chr1 8696620 8696928 -233967425 - AluSx SINE Alu -3 309 2 2197 53 0 11 chr1 8697471 8697755 -233966598 - AluY SINE Alu -2 309 29 673 219 0 71 chr1 8698219 8698329 -233966024 + MER104 DNA Tc2 5 98 -1800 2119 117 3 3 chr1 8698329 8698637 -233965716 - AluSg SINE Alu -2 308 1 673 219 0 71 chr1 8698637 8698709 -233965644 + MER104 DNA Tc2 98 174 -6 347 229 53 61 chr1 8698852 8698983 -233965370 + L2 LINE L2 2934 3063 -250 1581 157 79 140 chr1 8699406 8699670 -233964683 + MLT1D LTR MaLR 1 280 -225 1750 154 13 0 chr1 8699670 8699968 -233964385 - AluSx SINE Alu -10 302 1 1590 148 19 11 chr1 8699968 8700238 -233964115 - AluSx SINE Alu -13 299 28 1581 157 79 140 chr1 8700238 8700412 -233963941 + MLT1D LTR MaLR 279 404 -101 2088 90 14 0 chr1 8700412 8700700 -233963653 - AluSx SINE Alu -20 292 1 1581 157 79 140 chr1 8700700 8700793 -233963560 + MLT1D LTR MaLR 404 501 -4 1722 183 109 10 chr1 8701514 8701948 -233962405 - MLT1D LTR MaLR -5 462 1 394 332 31 38 chr1 8701978 8702267 -233962086 + ERVL LTR ERVL 1025 1311 -4453 1004 269 86 15 chr1 8702521 8703057 -233961296 + L1M4 LINE L1 2512 3085 -3061 1989 90 29 42 chr1 8703070 8703381 -233960972 + AluSp SINE Alu 1 307 -6 1479 268 154 29 chr1 8703395 8703676 -233960677 + L1M4 LINE L1 3316 3560 -2586 2005 116 27 3 chr1 8703676 8703977 -233960376 - AluSx SINE Alu -4 308 1 1479 268 154 29 chr1 8703977 8704557 -233959796 + L1M4 LINE L1 3560 4285 -1861 2294 88 0 16 chr1 8704557 8704694 -233959659 + AluSx SINE Alu 1 139 -173 2140 102 7 0 chr1 8704694 8704989 -233959364 + AluY SINE Alu 1 297 -14 2294 88 0 16 chr1 8704989 8705168 -233959185 + AluSx SINE Alu 139 312 0 1432 279 59 36 chr1 8705211 8705734 -233958619 + ERVL LTR ERVL 4745 5279 -485 1826 131 3 7 chr1 8706139 8706453 -233957900 - AluSx SINE Alu 0 313 1 1541 161 16 48 chr1 8706589 8706900 -233957453 - AluJo SINE Alu -11 301 1 370 325 99 29 chr1 8706988 8707231 -233957122 - L1ME LINE L1 -316 5805 5546 2066 112 3 0 chr1 8707340 8707635 -233956718 - AluSg SINE Alu -14 296 1 1030 90 0 0 chr1 8707635 8707768 -233956585 - AluSg SINE Alu -177 133 1 790 154 32 0 chr1 8708149 8708272 -233956081 - AluSx SINE Alu -22 288 162 500 141 0 0 chr1 8708270 8708341 -233956012 - AluSx SINE Alu -240 72 2 * 242 288 14 14 chr1 8708565 8708638 -233955715 - MIR SINE MIR -65 143 71 1677 176 3 16 chr1 8708652 8708964 -233955389 - AluJo SINE Alu -2 310 3 953 114 0 0 chr1 8708969 8709101 -233955252 - FLAM_C SINE Alu -11 132 1 552 272 251 5 chr1 8709270 8709465 -233954888 - MIR SINE MIR 0 262 20 884 245 169 46 chr1 8709797 8710210 -233954143 + L2 LINE L2 2850 3313 0 1916 110 20 37 chr1 8710585 8710757 -233953596 - AluSc SINE Alu -14 295 129 1800 81 16 12 chr1 8710757 8711015 -233953338 - AluSq SINE Alu -10 303 45 1916 110 20 37 chr1 8711015 8711142 -233953211 - AluSc SINE Alu -180 129 1 2100 99 0 26 chr1 8711233 8711535 -233952818 - AluSx SINE Alu -18 294 1 2119 83 0 23 chr1 8712349 8712649 -233951704 + AluSx SINE Alu 1 293 -19 299 280 126 40 chr1 8712813 8712988 -233951365 - L2 LINE L2 -297 3016 2827 259 179 39 26 chr1 8712993 8713071 -233951282 + (TG)n Simple_repeat Simple_repeat 1 79 0 389 214 0 12 chr1 8713073 8713157 -233951196 - L2 LINE L2 -504 2810 2728 441 0 0 0 chr1 8713172 8713221 -233951132 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 104 21 0 chr1 8713222 8713270 -233951083 + (GA)n Simple_repeat Simple_repeat 2 50 0 759 221 7 0 chr1 8713270 8713415 -233950938 - FRAM SINE Alu -30 146 1 751 92 151 0 chr1 8713745 8713864 -233950489 - L1PA14 LINE L1 -1 6160 6024 619 98 0 0 chr1 8714268 8714350 -233950003 + AluS SINE Alu 2 83 -230 1927 104 0 0 chr1 8714350 8714609 -233949744 + AluSx SINE Alu 36 294 -18 222 298 48 48 chr1 8715073 8715177 -233949176 + MIR SINE MIR 159 262 0 219 69 0 0 chr1 8716090 8716119 -233948234 + (CA)n Simple_repeat Simple_repeat 1 29 0 2379 112 0 0 chr1 8716388 8716701 -233947652 + AluSq SINE Alu 1 313 0 312 178 0 0 chr1 8716917 8716990 -233947363 + (CAT)n Simple_repeat Simple_repeat 2 74 0 1121 60 0 0 chr1 8717226 8717360 -233946993 + AluY SINE Alu 169 302 -9 904 124 0 29 chr1 8717373 8717510 -233946843 + AluJb SINE Alu 1 133 -179 693 202 54 24 chr1 8717548 8717716 -233946637 + MLT1D LTR MaLR 21 193 -312 835 154 8 0 chr1 8717723 8717846 -233946507 + AluJo/FLAM SINE Alu 1 124 -188 1723 173 3 23 chr1 8717848 8718148 -233946205 + AluJo SINE Alu 1 294 -18 2365 98 0 0 chr1 8718149 8718446 -233945907 + AluSx SINE Alu 1 297 -15 985 251 34 0 chr1 8718479 8718734 -233945619 + MLT1D LTR MaLR 217 505 0 272 267 69 40 chr1 8718734 8718835 -233945518 - MIR SINE MIR -151 111 8 2399 94 0 10 chr1 8718861 8719169 -233945184 + AluSq SINE Alu 1 305 -8 1911 86 100 4 chr1 8719172 8719441 -233944912 + AluSg SINE Alu 1 295 -15 2307 102 3 0 chr1 8720191 8720486 -233943867 - AluSq SINE Alu -17 296 1 1145 220 24 16 chr1 8720715 8720970 -233943383 + AluJo SINE Alu 54 310 -2 870 173 0 0 chr1 8721003 8721136 -233943217 - FLAM_A SINE Alu 0 133 1 2409 83 3 0 chr1 8721202 8721502 -233942851 - AluSx SINE Alu -11 301 1 1850 103 4 8 chr1 8722139 8722391 -233941962 + AluSx SINE Alu 47 297 -15 270 355 10 44 chr1 8722402 8722605 -233941748 - L2 LINE L2 -2697 617 422 365 234 103 61 chr1 8723040 8723352 -233941001 - L1MC5 LINE L1 -1 8041 7720 226 74 0 56 chr1 8723435 8723489 -233940864 - L1MC5 LINE L1 -282 7679 7629 2298 105 0 3 chr1 8724062 8724368 -233939985 + AluSx SINE Alu 1 305 -7 270 0 0 0 chr1 8724560 8724590 -233939763 + (T)n Simple_repeat Simple_repeat 1 30 0 1344 119 0 11 chr1 8724851 8725028 -233939325 - AluSx SINE Alu -137 175 1 1076 164 45 0 chr1 8726503 8726680 -233937673 - MER58A DNA MER1_type 0 224 40 480 136 344 24 chr1 8726981 8727106 -233937247 + FAM SINE Alu 3 167 -8 23 0 0 0 chr1 8727106 8727129 -233937224 + AT_rich Low_complexity Low_complexity 1 23 0 2536 215 40 30 chr1 8727272 8727344 -233937009 + L1ME1 LINE L1 5511 5581 -585 2378 99 0 10 chr1 8727344 8727657 -233936696 - AluSg SINE Alu 0 310 1 2536 215 40 30 chr1 8727657 8728227 -233936126 + L1ME1 LINE L1 5581 6160 -6 2175 98 11 3 chr1 8728475 8728760 -233935593 - AluSq SINE Alu -24 289 3 2232 108 0 7 chr1 8728770 8729067 -233935286 - AluSg SINE Alu -15 295 1 828 237 110 4 chr1 8729300 8729528 -233934825 - MIR SINE MIR 0 262 11 2088 125 0 31 chr1 8730972 8731292 -233933061 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr1 8731322 8731351 -233933002 + AT_rich Low_complexity Low_complexity 1 29 0 294 194 0 0 chr1 8732430 8732492 -233931861 - Alu SINE Alu 0 302 241 815 173 15 0 chr1 8732611 8732744 -233931609 + AluJb SINE Alu 148 282 -30 459 0 0 0 chr1 8732747 8732798 -233931555 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 317 208 0 0 chr1 8732808 8732868 -233931485 + AluJ/monomer SINE Alu 1 45 -263 981 174 6 0 chr1 8732877 8733038 -233931315 + AluJb SINE Alu 147 308 -4 2284 86 0 3 chr1 8733038 8733329 -233931024 + AluSg SINE Alu 1 290 -20 1140 277 20 48 chr1 8733691 8734149 -233930204 - L2 LINE L2 -43 3270 2826 1792 126 68 4 chr1 8734701 8734979 -233929374 - AluSx SINE Alu -3 309 14 299 239 137 58 chr1 8735278 8735483 -233928870 + L1ME LINE L1 5385 5605 -516 1524 177 11 14 chr1 8735550 8735833 -233928520 + AluJo SINE Alu 1 282 -30 702 165 0 9 chr1 8736252 8736361 -233927992 + Tigger3(Golem) DNA MER2_type 1 108 -2921 505 76 51 25 chr1 8736352 8736431 -233927922 + Tigger3(Golem) DNA MER2_type 2277 2357 -672 * 3623 126 34 56 chr1 8736552 8736563 -233927790 + Tigger3(Golem) DNA MER2_type 2386 2396 -632 2228 114 0 19 chr1 8736563 8736880 -233927473 + AluSx SINE Alu 1 311 -1 3623 126 34 56 chr1 8736880 8736945 -233927408 + Tigger3(Golem) DNA MER2_type 2396 2461 -567 2141 112 3 7 chr1 8736945 8737241 -233927112 - AluSq SINE Alu -12 301 7 3623 126 34 56 chr1 8737241 8737820 -233926533 + Tigger3(Golem) DNA MER2_type 2461 3027 -1 1518 142 0 124 chr1 8737881 8738030 -233926323 + AluJb SINE Alu 1 88 -224 2154 112 10 0 chr1 8738030 8738324 -233926029 + AluSx SINE Alu 1 297 -15 1518 142 0 124 chr1 8738324 8738504 -233925849 + AluJb SINE Alu 88 289 -23 21 0 0 0 chr1 8738575 8738596 -233925757 + AT_rich Low_complexity Low_complexity 1 21 0 182 319 83 14 chr1 8738970 8739042 -233925311 + L2 LINE L2 3127 3203 -69 189 175 0 0 chr1 8739500 8739540 -233924813 + (CA)n Simple_repeat Simple_repeat 2 41 0 1922 143 0 4 chr1 8739853 8740133 -233924220 + AluSx SINE Alu 1 279 -33 1091 93 0 70 chr1 8740246 8740418 -233923935 - AluSq SINE Alu -53 260 101 655 138 0 0 chr1 8740472 8740566 -233923787 + AluSg1 SINE Alu 2 95 -214 188 35 35 0 chr1 8740566 8740595 -233923758 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2238 110 0 0 chr1 8740687 8740979 -233923374 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 8740979 8741009 -233923344 + AT_rich Low_complexity Low_complexity 1 30 0 180 200 0 0 chr1 8741150 8741190 -233923163 + (TA)n Simple_repeat Simple_repeat 1 40 0 1480 171 23 63 chr1 8741590 8741889 -233922464 + AluJb SINE Alu 1 287 -25 241 286 16 0 chr1 8741965 8742028 -233922325 + L2 LINE L2 3234 3297 -16 2079 132 0 3 chr1 8742088 8742391 -233921962 - AluSx SINE Alu -10 302 1 2078 151 0 0 chr1 8742450 8742755 -233921598 + AluSx SINE Alu 1 305 -7 2585 59 0 3 chr1 8743018 8743324 -233921029 - AluY SINE Alu -6 305 1 690 296 37 21 chr1 8744202 8744264 -233920089 - MIR SINE MIR 0 262 203 1836 166 0 7 chr1 8744264 8744560 -233919793 - AluJo SINE Alu -18 294 1 690 296 37 21 chr1 8744560 8744740 -233919613 - MIR SINE MIR -59 203 16 2052 125 0 20 chr1 8744894 8745197 -233919156 + AluSq SINE Alu 1 297 -16 1808 172 0 3 chr1 8745207 8745536 -233918817 + AluJb SINE Alu 1 328 0 2220 102 0 0 chr1 8745579 8745884 -233918469 + AluSx SINE Alu 1 305 0 2157 119 3 0 chr1 8746094 8746388 -233917965 - AluSq SINE Alu -18 295 1 2045 120 10 13 chr1 8746652 8746960 -233917393 - AluSx SINE Alu -5 307 1 1276 214 56 4 chr1 8747016 8747283 -233917070 - AluJo SINE Alu -31 281 1 1203 139 0 0 chr1 8747327 8747499 -233916854 + AluSg/x SINE Alu 124 295 -15 876 163 0 0 chr1 8747732 8747861 -233916492 + FLAM_C SINE Alu 3 131 -12 1852 157 3 7 chr1 8747922 8748221 -233916132 - AluJo SINE Alu -14 298 1 432 245 185 0 chr1 8749001 8749152 -233915201 + L2 LINE L2 2449 2627 -687 1796 178 0 18 chr1 8749340 8749650 -233914703 + AluJb SINE Alu 1 305 0 1940 110 88 25 chr1 8749750 8750067 -233914286 + MER1B DNA MER1_type 1 337 0 197 217 0 67 chr1 8750159 8750219 -233914134 + MIR SINE MIR 120 175 -87 417 238 151 101 chr1 8750273 8750676 -233913677 - L2 LINE L2 0 3313 2784 1850 153 0 14 chr1 8750676 8750970 -233913383 + AluSx SINE Alu 1 290 -22 417 238 151 101 chr1 8750970 8751050 -233913303 - L2 LINE L2 -529 2784 2710 1263 284 152 10 chr1 8751201 8751793 -233912560 - L2 LINE L2 -647 2667 1992 2610 44 0 0 chr1 8752723 8753019 -233911334 + AluY SINE Alu 1 296 -15 2526 71 10 0 chr1 8753023 8753333 -233911020 + AluSp SINE Alu 1 313 0 407 300 71 29 chr1 8753950 8754120 -233910233 + MIR SINE MIR 20 196 -66 251 179 0 18 chr1 8754256 8754312 -233910041 - AluSp/q SINE Alu 0 303 249 2340 90 3 13 chr1 8754319 8754629 -233909724 - AluSx SINE Alu -5 307 1 381 89 0 0 chr1 8754915 8754957 -233909396 + (TC)n Simple_repeat Simple_repeat 2 46 -11 279 0 0 0 chr1 8754957 8754988 -233909365 + (CA)n Simple_repeat Simple_repeat 1 31 0 381 89 0 0 chr1 8754988 8755001 -233909352 + (TC)n Simple_repeat Simple_repeat 45 57 0 321 255 133 0 chr1 8755365 8755463 -233908890 + MIR SINE MIR 80 190 -72 2142 113 0 3 chr1 8755468 8755773 -233908580 - AluSx SINE Alu 0 304 1 1951 139 0 17 chr1 8756167 8756304 -233908049 + AluJb SINE Alu 1 139 -171 2244 98 10 7 chr1 8756304 8756600 -233907753 + AluSx SINE Alu 1 297 -15 1951 139 0 17 chr1 8756600 8756777 -233907576 + AluJb SINE Alu 139 310 0 2424 84 0 0 chr1 8757220 8757517 -233906836 - AluY SINE Alu -14 297 1 1981 169 68 39 chr1 8757702 8758084 -233906269 + MSTB LTR MaLR 1 397 -29 1785 82 0 9 chr1 8758084 8758316 -233906037 + MER30 DNA MER1_type 1 230 0 1981 169 68 39 chr1 8758316 8758347 -233906006 + MSTB LTR MaLR 397 426 0 2341 82 0 0 chr1 8758362 8758674 -233905679 - AluSc SINE Alu 0 312 1 211 172 35 0 chr1 8758708 8758766 -233905587 + A-rich Low_complexity Low_complexity 4 63 0 2060 127 0 3 chr1 8758770 8759085 -233905268 + AluJb SINE Alu 1 314 0 688 262 139 36 chr1 8759211 8759617 -233904736 + MLT1G1 LTR MaLR 1 496 -71 2210 91 20 17 chr1 8759617 8759913 -233904440 - AluSx SINE Alu -15 297 1 688 262 139 36 chr1 8759913 8759963 -233904390 + MLT1G1 LTR MaLR 496 539 -28 240 228 30 30 chr1 8759965 8760066 -233904287 + MLT1G1-int LTR MaLR 1 101 -1270 340 338 31 14 chr1 8760074 8760296 -233904057 + MLT1G1-int LTR MaLR 290 515 -856 28 0 0 0 chr1 8760301 8760329 -233904024 + AT_rich Low_complexity Low_complexity 1 28 0 2370 87 3 0 chr1 8760408 8760708 -233903645 + AluSx SINE Alu 1 301 -11 200 97 65 16 chr1 8760956 8761018 -233903335 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 288 217 0 0 chr1 8761151 8761220 -233903133 + AluSp/q SINE Alu 233 301 -2 1959 106 26 70 chr1 8762052 8762364 -233901989 - AluSx SINE Alu -14 298 1 2337 96 10 0 chr1 8762373 8762674 -233901679 - AluSx SINE Alu -8 304 1 2315 106 0 0 chr1 8763010 8763311 -233901042 - AluSg SINE Alu -8 302 2 2007 108 0 0 chr1 8763603 8763863 -233900490 - AluSc SINE Alu -21 288 29 1534 102 9 14 chr1 8764487 8764703 -233899650 - AluSg/x SINE Alu -22 288 74 392 308 77 16 chr1 8764798 8764980 -233899373 + MIR SINE MIR 18 210 -52 347 294 37 37 chr1 8765159 8765295 -233899058 + MIR3 SINE MIR 68 203 -5 302 277 8 50 chr1 8765363 8765427 -233898926 - MIR SINE MIR -1 261 202 2157 109 0 0 chr1 8765427 8765746 -233898607 - AluY SINE Alu 0 319 1 302 277 8 50 chr1 8765746 8765799 -233898554 - MIR SINE MIR -60 202 148 1330 178 82 4 chr1 8765918 8766149 -233898204 - AluJo SINE Alu -63 249 1 2570 53 0 37 chr1 8766164 8766485 -233897868 - AluY SINE Alu -2 309 1 228 241 86 0 chr1 8766622 8766680 -233897673 + L2 LINE L2 3208 3270 -2 495 241 153 76 chr1 8767647 8767842 -233896511 + L1MC5 LINE L1 6920 7098 -863 2253 114 0 16 chr1 8767842 8768157 -233896196 - AluSx SINE Alu -2 310 1 495 241 153 76 chr1 8768157 8768241 -233896112 + L1MC5 LINE L1 7098 7174 -787 1559 120 5 0 chr1 8768241 8768457 -233895896 - AluSq SINE Alu -20 293 77 495 241 153 76 chr1 8768457 8768678 -233895675 + L1MC5 LINE L1 7174 7460 -501 26 0 0 0 chr1 8768829 8768855 -233895498 + AT_rich Low_complexity Low_complexity 1 26 0 227 51 0 0 chr1 8769104 8769143 -233895210 + Alu SINE Alu 128 166 0 2010 133 7 13 chr1 8769182 8769491 -233894862 - AluJb SINE Alu -5 307 1 24 0 0 0 chr1 8770156 8770180 -233894173 + AT_rich Low_complexity Low_complexity 1 24 0 1046 182 107 36 chr1 8770694 8770974 -233893379 - AluJb SINE Alu -2 300 1 2226 158 0 0 chr1 8771001 8771337 -233893016 + MER1B DNA MER1_type 2 337 0 1512 191 14 27 chr1 8771454 8771747 -233892606 + AluJo SINE Alu 1 289 -23 2261 93 0 10 chr1 8771762 8772062 -233892291 + AluSg SINE Alu 1 297 -13 797 178 7 27 chr1 8772084 8772230 -233892123 + AluJb SINE Alu 13 155 -157 2430 91 3 0 chr1 8772334 8772641 -233891712 + AluSc SINE Alu 1 308 -1 1825 121 21 25 chr1 8772891 8773205 -233891148 - AluSg SINE Alu 0 313 1 242 300 10 10 chr1 8773674 8773774 -233890579 + L2 LINE L2 2681 2780 -534 1143 134 0 0 chr1 8774185 8774342 -233890011 + AluSg/x SINE Alu 125 281 -31 2348 112 0 0 chr1 8774779 8775082 -233889271 + AluSx SINE Alu 1 303 -9 2151 140 0 0 chr1 8775214 8775521 -233888832 + AluSq SINE Alu 1 307 -6 553 168 103 52 chr1 8775522 8775677 -233888676 - AluJo SINE Alu -36 276 114 590 0 14 0 chr1 8775735 8775805 -233888548 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1528 186 10 35 chr1 8775805 8775955 -233888398 - AluJo SINE Alu -29 283 142 2492 67 3 7 chr1 8775955 8776252 -233888101 - AluSp SINE Alu -13 300 5 1528 186 10 35 chr1 8776252 8776391 -233887962 - AluJo SINE Alu -170 142 1 2250 103 7 7 chr1 8776401 8776702 -233887651 - AluSp SINE Alu -12 301 1 2323 92 7 0 chr1 8776704 8776997 -233887356 - AluSp SINE Alu -18 295 1 22 35 0 0 chr1 8777224 8777253 -233887100 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 8777311 8777334 -233887019 + AT_rich Low_complexity Low_complexity 1 23 0 2307 112 0 0 chr1 8777456 8777751 -233886602 + AluSx SINE Alu 1 295 -17 759 275 37 68 chr1 8778187 8778560 -233885793 - L2 LINE L2 -5 3308 2948 1863 120 88 0 chr1 8778560 8778843 -233885510 + AluSx SINE Alu 1 308 -4 759 275 37 68 chr1 8778843 8778898 -233885455 - L2 LINE L2 -365 2948 2893 2458 103 0 0 chr1 8778903 8779215 -233885138 + AluSx SINE Alu 1 312 0 691 198 78 12 chr1 8780023 8780190 -233884163 + MIR SINE MIR 69 246 -16 1742 164 17 27 chr1 8780328 8780626 -233883727 + AluJb SINE Alu 1 295 -17 2523 66 3 0 chr1 8780701 8781003 -233883350 + AluSp SINE Alu 1 303 -10 323 23 23 0 chr1 8781003 8781047 -233883306 + (TA)n Simple_repeat Simple_repeat 2 46 0 2293 114 0 0 chr1 8781298 8781588 -233882765 + AluSg SINE Alu 3 292 -18 2434 94 0 0 chr1 8781589 8781897 -233882456 + AluSg SINE Alu 1 308 -2 1280 204 68 11 chr1 8782042 8782322 -233882031 - AluJo SINE Alu -6 296 1 225 0 0 0 chr1 8783244 8783269 -233881084 + (TA)n Simple_repeat Simple_repeat 1 25 0 229 233 0 0 chr1 8783269 8783329 -233881024 - L1MC4 LINE L1 -1339 6703 6644 1232 151 0 33 chr1 8783360 8783572 -233880781 - AluJo SINE Alu -103 209 5 32 0 0 0 chr1 8785341 8785373 -233878980 + GC_rich Low_complexity Low_complexity 1 32 0 2244 98 14 0 chr1 8786944 8787240 -233877113 - AluSq SINE Alu -13 300 1 2126 103 3 40 chr1 8787522 8787843 -233876510 + AluSx SINE Alu 3 311 -1 226 235 0 0 chr1 8788193 8788244 -233876109 + L1 LINE L1 4284 4334 -1812 1555 152 78 19 chr1 8788275 8788544 -233875809 - AluJb SINE Alu -27 285 1 1821 164 6 35 chr1 8788591 8788909 -233875444 + AluJo SINE Alu 1 309 -3 2158 96 0 4 chr1 8788943 8789224 -233875129 + AluSx SINE Alu 20 299 -13 378 170 2 5 chr1 8789560 8789656 -233874697 - AluS SINE Alu 0 301 228 216 97 0 0 chr1 8789681 8789712 -233874641 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2089 104 0 17 chr1 8789714 8790001 -233874352 - AluSx SINE Alu -30 282 1 1909 133 0 65 chr1 8790021 8790212 -233874141 - AluSx SINE Alu -11 301 138 2172 122 3 0 chr1 8790212 8790507 -233873846 + AluSp SINE Alu 1 296 -17 1909 133 0 65 chr1 8790507 8790637 -233873716 - AluSx SINE Alu -174 138 1 2085 114 3 13 chr1 8790695 8790994 -233873359 - AluSg SINE Alu -14 296 1 928 202 0 0 chr1 8791050 8791218 -233873135 + FAM SINE Alu 2 169 -6 1970 154 3 0 chr1 8791243 8791535 -233872818 + AluSq SINE Alu 1 293 -20 751 184 8 0 chr1 8792293 8792418 -233871935 + FAM SINE Alu 41 166 -19 21 36 0 0 chr1 8792418 8792446 -233871907 + AT_rich Low_complexity Low_complexity 1 28 0 2399 81 3 3 chr1 8792455 8792763 -233871590 + AluY SINE Alu 1 308 -3 1106 264 84 39 chr1 8792843 8793429 -233870924 - L1M4 LINE L1 -1218 4928 4317 2258 109 3 0 chr1 8793490 8793783 -233870570 - AluSx SINE Alu -18 294 1 2013 113 7 4 chr1 8795180 8795454 -233868899 - AluSx SINE Alu -24 288 14 2176 119 13 13 chr1 8795472 8795783 -233868570 - AluSx SINE Alu -1 311 1 24 53 0 0 chr1 8795890 8795928 -233868425 + AT_rich Low_complexity Low_complexity 1 38 0 2057 105 0 90 chr1 8796749 8796841 -233867512 + AluSx SINE Alu 1 100 -212 2399 91 3 3 chr1 8796841 8797150 -233867203 + AluSc SINE Alu 1 309 0 2057 105 0 90 chr1 8797150 8797219 -233867134 + AluSx SINE Alu 100 174 -138 2429 87 3 0 chr1 8797219 8797517 -233866836 + AluSp SINE Alu 2 300 -13 2057 105 0 90 chr1 8797517 8797688 -233866665 + AluSx SINE Alu 174 304 -8 337 261 60 65 chr1 8797889 8798104 -233866249 + MIR SINE MIR 48 261 -1 286 234 47 0 chr1 8798161 8798225 -233866128 + MIR SINE MIR 14 80 -182 * 552 237 46 8 chr1 8798211 8798342 -233866011 + L2 LINE L2 3137 3272 0 219 304 63 0 chr1 8799161 8799240 -233865113 + MIR SINE MIR 32 115 -93 1931 164 0 0 chr1 8799579 8799878 -233864475 + AluSx SINE Alu 1 299 -13 2025 150 3 31 chr1 8800027 8800381 -233863972 + MER7A DNA MER2_type 5 346 0 429 133 0 0 chr1 8800451 8800511 -233863842 + AluS SINE Alu 2 61 -257 1022 118 0 7 chr1 8800614 8800758 -233863595 + AluSg/x SINE Alu 129 271 -41 741 116 124 8 chr1 8800769 8800890 -233863463 + FLAM_C SINE Alu 2 136 -7 2092 138 0 0 chr1 8801182 8801473 -233862880 - AluSx SINE Alu -21 291 1 2536 81 0 3 chr1 8801960 8802270 -233862083 - AluSc SINE Alu 0 309 1 2508 134 57 2 chr1 8802640 8803044 -233861309 + MSTB LTR MaLR 1 426 0 426 252 63 25 chr1 8803111 8803270 -233861083 + HsTC2 DNA Tc2 729 893 -1005 1880 118 0 0 chr1 8803389 8803666 -233860687 + AluSx SINE Alu 35 312 0 1920 138 3 3 chr1 8804076 8804358 -233859995 - AluSx SINE Alu -8 304 23 990 148 206 18 chr1 8805160 8805383 -233858970 + L1MD3 LINE L1 7730 7994 -1 400 250 60 9 chr1 8806089 8806205 -233858148 - L2 LINE L2 -3 3310 3189 2004 98 0 85 chr1 8806536 8806670 -233857683 + AluSc SINE Alu 1 145 -182 2372 95 10 0 chr1 8806670 8806974 -233857379 + AluSc SINE Alu 1 307 -2 2004 98 0 85 chr1 8806974 8807192 -233857161 + AluSc SINE Alu 145 327 0 2332 99 6 6 chr1 8807881 8808193 -233856160 + AluSx SINE Alu 1 312 0 234 0 0 0 chr1 8808838 8808864 -233855489 + (CA)n Simple_repeat Simple_repeat 2 27 0 2473 68 3 13 chr1 8809034 8809343 -233855010 + AluY SINE Alu 1 306 -5 2266 102 3 0 chr1 8809989 8810283 -233854070 + AluSp SINE Alu 1 295 -18 372 293 13 63 chr1 8810335 8810530 -233853823 + FAM SINE Alu 1 168 -7 1417 137 11 48 chr1 8811362 8811632 -233852721 - AluJb SINE Alu 0 312 53 304 331 122 0 chr1 8811664 8811812 -233852541 - L1ME4a LINE L1 -82 6039 5874 2160 117 0 19 chr1 8812026 8812205 -233852148 - AluSg SINE Alu 0 310 138 2377 86 0 3 chr1 8812205 8812496 -233851857 - AluY SINE Alu -21 290 1 2160 117 0 19 chr1 8812496 8812632 -233851721 - AluSg SINE Alu -172 138 1 2067 125 4 0 chr1 8812637 8812938 -233851415 - AluSx SINE Alu 0 302 1 798 169 0 22 chr1 8813158 8813294 -233851059 - FLAM_C SINE Alu 0 133 1 342 231 17 34 chr1 8813294 8813402 -233850951 - L1ME4a LINE L1 -271 5850 5743 194 269 43 65 chr1 8813401 8813494 -233850859 + MIR SINE MIR 114 204 -58 * 1606 171 33 0 chr1 8813560 8813834 -233850519 - AluJo SINE Alu -29 283 1 1633 129 30 113 chr1 8814677 8814958 -233849395 - MER7A DNA MER2_type -2699 339 97 2281 98 0 0 chr1 8814958 8815245 -233849108 - AluSg SINE Alu -23 287 1 1633 129 30 113 chr1 8815245 8815334 -233849019 - MER7A DNA MER2_type -2941 97 2 1293 142 5 10 chr1 8815590 8815787 -233848566 + AluSx SINE Alu 26 221 -91 884 152 7 7 chr1 8815926 8816064 -233848289 - AluJo SINE Alu -174 138 1 2111 139 0 0 chr1 8816084 8816387 -233847966 - AluSq SINE Alu -10 303 1 1956 153 0 10 chr1 8816451 8816758 -233847595 - AluJb SINE Alu -4 308 5 189 173 77 58 chr1 8818081 8818133 -233846220 + MIR SINE MIR 33 85 -123 2175 102 0 3 chr1 8818176 8818495 -233845858 - AluSg SINE Alu 0 318 1 2390 92 0 3 chr1 8818602 8818907 -233845446 - AluSq SINE Alu -9 304 1 2400 73 3 0 chr1 8819032 8819319 -233845034 - AluSq SINE Alu -25 288 1 2130 107 7 0 chr1 8819645 8819969 -233844384 - AluSx SINE Alu 0 326 1 885 116 0 8 chr1 8821021 8821150 -233843203 - AluSg/x SINE Alu -12 300 173 1968 112 0 14 chr1 8821701 8821987 -233842366 - AluSx SINE Alu -19 293 12 744 188 0 16 chr1 8822012 8822140 -233842213 - FLAM_C SINE Alu -16 127 2 308 263 59 59 chr1 8822140 8822258 -233842095 - L1M4 LINE L1 -6376 166 49 2104 77 26 4 chr1 8822555 8822827 -233841526 + AluSq SINE Alu 14 291 -22 986 151 6 67 chr1 8822834 8823013 -233841340 + AluSg/x SINE Alu 128 295 -15 227 217 14 72 chr1 8823246 8823315 -233841038 - MIR SINE MIR -124 84 20 305 226 105 65 chr1 8824285 8824409 -233839944 - FLAM_A SINE Alu -4 129 1 189 0 0 0 chr1 8824412 8824433 -233839920 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr1 8824951 8824973 -233839380 + AT_rich Low_complexity Low_complexity 1 22 0 778 135 35 28 chr1 8825372 8825513 -233838840 - FLAM_C SINE Alu 0 143 2 2501 80 0 0 chr1 8825546 8825857 -233838496 + AluY SINE Alu 1 311 0 290 289 217 7 chr1 8826798 8826950 -233837403 + MIR SINE MIR 24 207 -55 2207 88 13 13 chr1 8827475 8827780 -233836573 + AluSp SINE Alu 1 305 -8 2116 112 0 0 chr1 8828089 8828366 -233835987 + AluSx SINE Alu 21 297 -15 700 196 8 23 chr1 8828375 8828508 -233835845 + FLAM_C SINE Alu 2 132 -1 1072 153 139 0 chr1 8828597 8828799 -233835554 - AluJo SINE Alu -20 292 63 1036 177 0 31 chr1 8828907 8829099 -233835254 - AluJo SINE Alu -126 186 1 2280 110 0 3 chr1 8829322 8829630 -233834723 - AluSc SINE Alu -2 307 1 258 240 0 27 chr1 8831338 8831413 -233832940 + CT-rich Low_complexity Low_complexity 4 76 0 369 274 162 11 chr1 8831659 8831838 -233832515 + L3 LINE CR1 1294 1499 -78 2598 52 0 3 chr1 8832021 8832328 -233832025 + AluY SINE Alu 1 306 -5 989 157 7 7 chr1 8833189 8833342 -233831011 + FRAM SINE Alu 1 153 -23 2174 110 7 19 chr1 8833364 8833500 -233830853 + AluSx SINE Alu 1 137 -175 2080 129 10 7 chr1 8833500 8833809 -233830544 + AluSx SINE Alu 1 310 -2 2174 110 7 19 chr1 8833809 8833980 -233830373 + AluSx SINE Alu 137 304 -8 2340 102 0 0 chr1 8835141 8835435 -233828918 - AluSx SINE Alu -18 294 1 1235 153 6 0 chr1 8836337 8836520 -233827833 - AluSg/x SINE Alu -57 255 72 420 186 0 0 chr1 8837260 8837330 -233827023 - AluJ/FRAM SINE Alu -19 293 224 24 0 0 0 chr1 8837806 8837830 -233826523 + AT_rich Low_complexity Low_complexity 1 24 0 652 251 56 101 chr1 8838484 8838698 -233825655 + L2 LINE L2 2972 3166 -147 2030 135 0 0 chr1 8838698 8839007 -233825346 + AluSx SINE Alu 1 309 0 652 251 56 101 chr1 8839007 8839149 -233825204 + L2 LINE L2 3166 3313 0 198 91 0 0 chr1 8839224 8839257 -233825096 + (TTAAA)n Simple_repeat Simple_repeat 1 33 0 969 118 7 0 chr1 8839257 8839392 -233824961 - L1PA8 LINE L1 -5 6167 6032 1168 108 0 6 chr1 8839572 8839739 -233824614 - AluY SINE Alu -7 304 139 1778 83 26 0 chr1 8839741 8839971 -233824382 + AluSc SINE Alu 56 291 -18 2355 71 7 7 chr1 8840525 8840820 -233823533 + AluY SINE Alu 1 295 -16 2261 94 10 3 chr1 8842490 8842788 -233821565 - AluSc SINE Alu -9 300 1 1933 134 29 0 chr1 8843683 8843959 -233820394 + AluSx SINE Alu 2 285 -27 25 0 0 0 chr1 8843959 8843984 -233820369 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 8845943 8845964 -233818389 + AT_rich Low_complexity Low_complexity 1 21 0 466 106 0 0 chr1 8847971 8848037 -233816316 + Alu SINE Alu 2 67 -251 1033 0 0 0 chr1 8848062 8848167 -233816186 + U6 snRNA snRNA 1 105 -2 234 182 0 0 chr1 8848167 8848233 -233816120 + A-rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr1 8848681 8848702 -233815651 + AT_rich Low_complexity Low_complexity 1 21 0 2098 113 0 0 chr1 8849051 8849365 -233814988 + AluSx SINE Alu 1 314 0 485 237 203 0 chr1 8850150 8850268 -233814085 + FLAM_A SINE Alu 1 142 0 413 52 0 143 chr1 8850444 8850480 -233813873 - MER41B LTR ERV1 -88 547 526 2227 106 20 0 chr1 8850480 8850782 -233813571 + AluSx SINE Alu 1 308 -4 413 52 0 143 chr1 8850782 8850822 -233813531 - MER41B LTR ERV1 -109 526 482 233 215 27 87 chr1 8852104 8852253 -233812100 + T-rich Low_complexity Low_complexity 2 141 0 1706 174 26 3 chr1 8855570 8855874 -233808479 + 7SLRNA srpRNA srpRNA 10 320 0 2250 116 7 0 chr1 8856396 8856706 -233807647 - AluSx SINE Alu 0 312 1 765 287 185 12 chr1 8858741 8859246 -233805107 + L2 LINE L2 2590 3197 -75 967 201 27 5 chr1 8859278 8859462 -233804891 - MER5A DNA MER1_type -1 188 1 1292 212 0 9 chr1 8859473 8859695 -233804658 - MER58A DNA MER1_type -2 222 3 207 300 56 33 chr1 8859770 8859860 -233804493 - L2 LINE L2 -43 3229 3138 1469 285 138 72 chr1 8859971 8860308 -233804045 + L2 LINE L2 1361 1674 -1640 2155 110 20 13 chr1 8860308 8860607 -233803746 - AluSx SINE Alu -11 301 1 1469 285 138 72 chr1 8860607 8861761 -233802592 + L2 LINE L2 1674 2951 -363 226 301 21 65 chr1 8861935 8862028 -233802325 + L2 LINE L2 3184 3272 0 1992 146 7 7 chr1 8862152 8862461 -233801892 - AluSx SINE Alu -3 309 1 242 281 49 0 chr1 8862461 8862543 -233801810 + MIR SINE MIR 153 238 -24 2615 60 0 0 chr1 8862643 8862945 -233801408 - AluY SINE Alu -9 302 1 199 0 0 0 chr1 8862983 8863005 -233801348 + (TTA)n Simple_repeat Simple_repeat 1 180 0 1942 100 48 0 chr1 8863005 8863277 -233801076 - AluSq SINE Alu -29 284 1 1880 173 0 0 chr1 8863503 8863815 -233800538 - AluJb SINE Alu 0 312 1 545 247 210 49 chr1 8864158 8864264 -233800089 - L1MC4 LINE L1 -122 7920 7832 2274 111 13 0 chr1 8864264 8864571 -233799782 - AluSx SINE Alu -1 311 1 545 247 210 49 chr1 8864571 8864869 -233799484 - L1MC4 LINE L1 -210 7832 7451 2399 106 0 0 chr1 8864869 8865171 -233799182 + AluSx SINE Alu 1 302 -10 1040 179 0 0 chr1 8865182 8865344 -233799009 + AluJb SINE Alu 137 298 -14 823 255 41 28 chr1 8865357 8865579 -233798774 - L1MC4 LINE L1 -591 7451 7222 1797 160 0 25 chr1 8865579 8865898 -233798455 - AluJb SINE Alu -1 311 1 823 255 41 28 chr1 8865898 8865993 -233798360 - L1MC4 LINE L1 -820 7222 7130 705 119 68 0 chr1 8865998 8866116 -233798237 - FAM SINE Alu -3 46 1 357 89 0 0 chr1 8866120 8866165 -233798188 + Alu SINE Alu 1 45 -257 1112 194 197 13 chr1 8866302 8866612 -233797741 - L1MC4 LINE L1 -919 7123 6757 2329 95 0 3 chr1 8866645 8866939 -233797414 + AluSg SINE Alu 1 293 -17 209 312 32 21 chr1 8867062 8867155 -233797198 - MIR SINE MIR -123 139 46 2208 96 10 7 chr1 8867535 8867826 -233796527 + AluSq SINE Alu 1 292 -21 615 249 62 10 chr1 8867957 8868150 -233796203 - MER106A DNA MER1_type -33 203 1 2357 84 7 0 chr1 8868199 8868496 -233795857 - AluSx SINE Alu -13 299 1 237 288 24 16 chr1 8869010 8869135 -233795218 + CT-rich Low_complexity Low_complexity 4 129 0 1700 139 100 0 chr1 8869811 8870096 -233794257 - AluSq SINE Alu 0 311 1 2168 133 0 0 chr1 8870198 8870499 -233793854 - AluSx SINE Alu -11 301 1 21 36 0 0 chr1 8870536 8870564 -233793789 + AT_rich Low_complexity Low_complexity 1 28 0 204 178 0 0 chr1 8871104 8871149 -233793204 + L2 LINE L2 3264 3308 -5 517 279 122 13 chr1 8871358 8871587 -233792766 + MIR SINE MIR 9 262 0 26 30 0 0 chr1 8871901 8871934 -233792419 + AT_rich Low_complexity Low_complexity 1 33 0 597 144 0 0 chr1 8872037 8872127 -233792226 - AluJ SINE Alu -20 292 203 874 139 0 0 chr1 8872135 8872257 -233792096 - AluJ SINE Alu -190 122 1 1443 191 40 7 chr1 8872444 8872716 -233791637 + AluJb SINE Alu 2 282 -30 226 204 78 97 chr1 8874060 8874163 -233790190 - L1ME4a LINE L1 -48 6073 5973 286 103 0 0 chr1 8876157 8876196 -233788157 + Alu SINE Alu 1 39 -262 879 85 51 0 chr1 8876196 8876314 -233788039 + AluSq/x SINE Alu 13 136 -176 2392 80 3 3 chr1 8876314 8876615 -233787738 + AluSq SINE Alu 1 301 -12 1381 176 69 24 chr1 8877020 8877310 -233787043 + AluJo SINE Alu 3 305 -7 2243 105 0 3 chr1 8878547 8878842 -233785511 + AluSg SINE Alu 1 294 -16 340 198 159 57 chr1 8879815 8879972 -233784381 - L2 LINE L2 -5 3308 3136 959 108 31 0 chr1 8880073 8880202 -233784151 + AluSq/x SINE Alu 1 133 -179 2297 98 7 3 chr1 8881151 8881458 -233782895 - AluSq SINE Alu -5 308 1 448 258 113 42 chr1 8881458 8881671 -233782682 + L1MC4 LINE L1 7809 8036 -6 26 0 0 0 chr1 8882340 8882366 -233781987 + GC_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr1 8882586 8882621 -233781732 + GC_rich Low_complexity Low_complexity 1 35 0 1837 164 7 7 chr1 8883157 8883461 -233780892 - AluJo SINE Alu -8 304 1 241 342 54 0 chr1 8883906 8884055 -233780298 + MIR SINE MIR 32 188 -74 2122 127 3 3 chr1 8884220 8884511 -233779842 + AluSx SINE Alu 1 291 -21 818 193 23 17 chr1 8884546 8884722 -233779631 + AluJb SINE Alu 126 302 -10 365 250 150 19 chr1 8884883 8885043 -233779310 - MIR SINE MIR -69 193 13 2239 47 18 11 chr1 8885131 8885405 -233778948 + AluSp SINE Alu 1 276 -37 5655 84 6 0 chr1 8885405 8886118 -233778235 - LTR5 LTR ERVK 0 969 253 4706 121 81 95 chr1 8886118 8887364 -233776989 + pTR5 LTR ERV1 753 2295 -143 2191 57 19 0 chr1 8887375 8887637 -233776716 - LTR5 LTR ERVK -702 267 1 1820 130 17 17 chr1 8887699 8887998 -233776355 + AluSx SINE Alu 1 299 -13 23 54 0 0 chr1 8888031 8888068 -233776285 + AT_rich Low_complexity Low_complexity 1 37 0 275 233 33 0 chr1 8888123 8888183 -233776170 + L2 LINE L2 3252 3313 0 588 227 110 0 chr1 8888224 8888387 -233775966 + MIR SINE MIR 15 195 -67 1045 232 94 80 chr1 8888517 8889090 -233775263 + MLT1G1 LTR MaLR 1 581 -14 2002 119 17 3 chr1 8889273 8889567 -233774786 + AluSx SINE Alu 1 298 -14 366 271 57 8 chr1 8889873 8889995 -233774358 - MIR SINE MIR -87 175 48 1708 142 4 8 chr1 8889995 8890263 -233774090 + AluJo SINE Alu 1 267 -45 1757 119 8 26 chr1 8890365 8890633 -233773720 + AluSc SINE Alu 47 309 0 669 193 0 59 chr1 8890634 8890769 -233773584 + AluJb SINE Alu 130 256 -56 873 176 7 0 chr1 8890787 8890935 -233773418 + AluJo SINE Alu 2 150 -162 201 39 0 0 chr1 8891288 8891314 -233773039 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 250 354 47 0 chr1 8892467 8892594 -233771759 - MIR SINE MIR -1 261 129 1700 174 6 34 chr1 8892718 8893039 -233771314 - AluJo SINE Alu 0 312 1 2293 110 0 3 chr1 8893262 8893570 -233770783 - AluSc SINE Alu -2 307 1 258 240 0 27 chr1 8895278 8895353 -233769000 + CT-rich Low_complexity Low_complexity 4 76 0 320 286 129 7 chr1 8895599 8895739 -233768614 + L3 LINE CR1 1294 1450 -127 2448 52 0 3 chr1 8895961 8896247 -233768106 + AluY SINE Alu 1 285 -26 2464 74 3 0 chr1 8896424 8896721 -233767632 + AluSg SINE Alu 3 300 -10 1641 175 10 33 chr1 8897494 8897797 -233766556 - AluJo SINE Alu -16 296 1 2115 125 7 0 chr1 8897808 8898103 -233766250 - AluSq SINE Alu -16 297 1 203 116 23 23 chr1 8898157 8898200 -233766153 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 925 92 23 23 chr1 8898274 8898405 -233765948 + FLAM_A SINE Alu 8 138 -4 2540 55 0 0 chr1 8898706 8898998 -233765355 - AluSg SINE Alu -18 292 1 239 111 0 22 chr1 8901853 8901898 -233762455 - L2 LINE L2 -209 3063 3020 326 291 115 7 chr1 8902962 8903110 -233761243 - MIR SINE MIR -1 261 98 739 138 13 7 chr1 8903115 8903355 -233760998 + AluSx SINE Alu 1 308 -2 1573 157 75 7 chr1 8904239 8904519 -233759834 + AluJb SINE Alu 1 299 -13 2346 93 3 3 chr1 8906026 8906337 -233758016 + AluSq SINE Alu 1 311 -2 275 328 15 38 chr1 8907298 8907429 -233756924 - MIR SINE MIR -55 207 80 1558 152 4 4 chr1 8907462 8907705 -233756648 + AluJb SINE Alu 1 243 -69 514 210 96 48 chr1 8907802 8907969 -233756384 - MER5B DNA MER1_type -3 175 1 807 153 0 29 chr1 8908629 8908766 -233755587 - FLAM_C SINE Alu 0 133 1 2506 76 0 13 chr1 8908899 8909214 -233755139 - AluSx SINE Alu 0 312 2 1290 117 73 10 chr1 8909351 8909557 -233754796 - MER20 DNA MER1_type 0 219 1 196 319 28 14 chr1 8909801 8909873 -233754480 - L2 LINE L2 -15 3257 3185 1124 148 0 0 chr1 8911330 8911492 -233752861 - FRAM SINE Alu -16 160 1 1857 170 17 3 chr1 8911707 8912007 -233752346 + AluSx SINE Alu 1 304 -8 1827 184 113 31 chr1 8912326 8912561 -233751792 - Charlie4a DNA MER1_type -1453 508 294 1907 102 91 0 chr1 8912561 8912826 -233751527 + AluSc SINE Alu 3 291 -18 2264 66 3 3 chr1 8912828 8913116 -233751237 + AluY SINE Alu 1 288 -23 1827 184 113 31 chr1 8913116 8913328 -233751025 - Charlie4a DNA MER1_type -1667 294 21 1585 158 82 0 chr1 8913365 8913644 -233750709 + AluJb SINE Alu 1 302 -10 31 68 0 0 chr1 8913702 8913761 -233750592 + AT_rich Low_complexity Low_complexity 1 59 0 838 279 70 8 chr1 8913919 8914163 -233750190 - MIR SINE MIR -2 260 2 1710 162 44 0 chr1 8914234 8914356 -233749997 + AluJo SINE Alu 1 116 -196 189 0 0 0 chr1 8914356 8914377 -233749976 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1710 162 44 0 chr1 8914377 8914551 -233749802 + AluJo SINE Alu 116 310 -2 390 282 28 66 chr1 8914815 8915028 -233749325 - L2 LINE L2 -628 2686 2482 24 0 0 0 chr1 8918426 8918450 -233745903 + AT_rich Low_complexity Low_complexity 1 24 0 2311 69 0 0 chr1 8918636 8918925 -233745428 + AluSg1 SINE Alu 1 289 -20 323 183 0 0 chr1 8919072 8919132 -233745221 - AluJo SINE Alu -3 299 240 2212 75 0 0 chr1 8919170 8919481 -233744872 + AluSc SINE Alu 1 311 0 1393 193 0 0 chr1 8919481 8919730 -233744623 - AluJo SINE Alu -63 249 1 413 294 96 14 chr1 8919759 8919977 -233744376 + MARNA DNA Mariner 68 303 -283 1247 162 93 15 chr1 8920016 8920275 -233744078 + AluJo SINE Alu 13 291 -21 2368 79 0 0 chr1 8920277 8920580 -233743773 + AluSq SINE Alu 1 303 -10 203 159 0 127 chr1 8920648 8920711 -233743642 + A-rich Low_complexity Low_complexity 1 55 0 838 132 0 0 chr1 8921123 8921252 -233743101 + AluSp/q SINE Alu 173 301 -12 2028 107 7 0 chr1 8922303 8922627 -233741726 + AluSx SINE Alu 1 326 0 2402 70 3 0 chr1 8922953 8923253 -233741100 + AluSq SINE Alu 1 301 -12 513 224 147 0 chr1 8923900 8924043 -233740310 + MIR SINE MIR 3 166 -96 1777 167 13 10 chr1 8924747 8925058 -233739295 + AluJb SINE Alu 1 312 0 1672 171 3 7 chr1 8925342 8925629 -233738724 + AluJo SINE Alu 5 290 -22 2142 112 0 3 chr1 8925959 8926264 -233738089 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 8926561 8926584 -233737769 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 8926717 8926739 -233737614 + AT_rich Low_complexity Low_complexity 1 22 0 2279 89 3 0 chr1 8926750 8927053 -233737300 - AluSx SINE Alu -8 304 1 2445 63 0 0 chr1 8927274 8927574 -233736779 + AluY SINE Alu 1 300 -11 215 257 188 20 chr1 8928263 8928364 -233735989 - L2 LINE L2 0 3272 3155 748 181 23 8 chr1 8928365 8928498 -233735855 + AluJo SINE Alu 2 136 -176 2254 101 0 0 chr1 8928498 8928806 -233735547 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr1 8928806 8928828 -233735525 + AT_rich Low_complexity Low_complexity 1 22 0 395 88 10 0 chr1 8929138 8929200 -233735153 + Alu SINE Alu 237 288 -14 2049 104 0 4 chr1 8929313 8929592 -233734761 - AluSx SINE Alu -17 295 18 560 104 0 0 chr1 8929636 8929713 -233734640 + Alu SINE Alu 2 78 -231 1161 124 0 16 chr1 8929735 8929920 -233734433 - AluSg/x SINE Alu -2 310 129 2016 131 0 16 chr1 8929928 8930240 -233734113 - AluSc SINE Alu -2 307 1 713 227 78 0 chr1 8930475 8930629 -233733724 - MER21B LTR ERV1 -369 494 329 748 319 111 11 chr1 8931178 8931529 -233732824 + L2 LINE L2 2900 3285 -28 1456 174 11 26 chr1 8931560 8931830 -233732523 + AluJo SINE Alu 1 266 -46 2294 91 3 0 chr1 8931864 8932171 -233732182 + AluSp SINE Alu 1 308 -5 2048 102 14 10 chr1 8932185 8932479 -233731874 + AluSx SINE Alu 1 295 -17 1502 205 0 7 chr1 8932502 8932827 -233731526 + AluJb SINE Alu 10 312 0 342 67 0 0 chr1 8932857 8932902 -233731451 + (TAA)n Simple_repeat Simple_repeat 2 46 0 801 197 0 14 chr1 8933029 8933176 -233731177 + FRAM SINE Alu 2 146 -30 436 202 18 55 chr1 8933545 8933654 -233730699 + MER20B DNA MER1_type 1 105 -678 1655 155 40 10 chr1 8933876 8934173 -233730180 + AluJo SINE Alu 1 306 -6 312 293 178 19 chr1 8934176 8934333 -233730020 + L2 LINE L2 1017 1198 -2116 481 205 71 31 chr1 8934337 8934464 -233729889 - MER104 DNA Tc2 -4 176 45 1501 173 11 4 chr1 8934466 8934737 -233729616 + AluJo SINE Alu 1 273 -39 527 174 0 0 chr1 8934737 8934823 -233729530 + AluSg/x SINE Alu 130 215 -95 380 305 99 0 chr1 8935756 8935907 -233728446 + Charlie1b DNA MER1_type 147 312 -211 2322 71 0 0 chr1 8935926 8936222 -233728131 - AluSg SINE Alu -14 296 1 2014 108 3 0 chr1 8936236 8936522 -233727831 - AluSx SINE Alu -25 287 1 928 182 0 6 chr1 8936524 8936689 -233727664 - FRAM SINE Alu -15 161 1 266 239 55 37 chr1 8936731 8936748 -233727605 - L1MA10 LINE L1 0 6334 6318 2088 192 68 46 chr1 8936748 8937235 -233727118 - L1ME1 LINE L1 -5 6161 5658 1557 142 56 8 chr1 8937235 8937503 -233726850 - AluSg SINE Alu -29 281 1 2088 192 68 46 chr1 8937503 8937584 -233726769 - L1ME1 LINE L1 -508 5658 5580 2099 125 0 3 chr1 8937585 8937898 -233726455 + AluSx SINE Alu 1 312 0 935 137 18 36 chr1 8938318 8938486 -233725867 - FRAM SINE Alu -1 165 1 1622 139 10 17 chr1 8938635 8938923 -233725430 - AluSx SINE Alu -26 286 1 2099 97 3 7 chr1 8939298 8939598 -233724755 + AluSg SINE Alu 1 299 -11 1659 170 0 0 chr1 8940724 8941041 -233723312 - AluJo SINE Alu 0 317 1 23 0 0 0 chr1 8941923 8941946 -233722407 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr1 8942046 8942082 -233722271 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 8942138 8942160 -233722193 + AT_rich Low_complexity Low_complexity 1 22 0 657 278 129 93 chr1 8945042 8945337 -233719016 + L2 LINE L2 2225 2508 -764 1630 170 0 0 chr1 8945337 8945608 -233718745 + AluJo SINE Alu 27 297 -15 657 278 129 93 chr1 8945608 8946316 -233718037 + L2 LINE L2 2508 3272 0 509 230 139 24 chr1 8946408 8946573 -233717780 - MIR SINE MIR -29 233 50 2003 134 0 7 chr1 8947056 8947362 -233716991 + AluSx SINE Alu 1 304 -8 1730 131 48 14 chr1 8947377 8947692 -233716661 + AluJo SINE Alu 12 336 0 1796 117 44 11 chr1 8947792 8948065 -233716288 - AluSx SINE Alu -30 282 1 1428 162 21 0 chr1 8948071 8948335 -233716018 - AluJo SINE Alu 0 308 40 241 197 38 29 chr1 8948335 8948460 -233715893 - L1ME LINE L1 -282 5884 5757 1061 218 0 25 chr1 8948461 8948741 -233715612 - AluJb SINE Alu -13 299 27 2001 122 0 0 chr1 8948777 8949071 -233715282 - AluSx SINE Alu -18 294 1 2300 60 10 3 chr1 8949110 8949411 -233714942 + AluY SINE Alu 1 303 -8 2321 58 3 22 chr1 8949541 8949853 -233714500 + AluSp SINE Alu 1 306 -7 968 88 15 0 chr1 8949909 8950046 -233714307 + AluSp/q SINE Alu 165 303 -10 457 276 0 24 chr1 8950075 8950198 -233714155 + MSTB LTR MaLR 208 327 -99 906 114 0 0 chr1 8950203 8950334 -233714019 - AluSg1 SINE Alu -178 131 1 278 103 0 0 chr1 8950334 8950373 -233713980 + MSTB LTR MaLR 388 426 0 2260 91 0 7 chr1 8950433 8950740 -233713613 + AluY SINE Alu 1 305 -6 1831 104 0 0 chr1 8951149 8951408 -233712945 - AluY SINE Alu -12 299 41 914 231 124 43 chr1 8951443 8951755 -233712598 + L1MEc LINE L1 1836 2121 -4275 2027 121 7 3 chr1 8951755 8952060 -233712293 + AluSx SINE Alu 1 306 -6 914 231 124 43 chr1 8952060 8952280 -233712073 + L1MEc LINE L1 2121 2411 -3985 2032 126 10 0 chr1 8952757 8953066 -233711287 + AluSx SINE Alu 1 312 0 313 241 71 35 chr1 8953178 8953319 -233711034 + L3 LINE CR1 1404 1549 -28 240 35 0 0 chr1 8953402 8953431 -233710922 + (A)n Simple_repeat Simple_repeat 1 29 0 1353 135 0 28 chr1 8954074 8954289 -233710064 - AluJo SINE Alu -22 290 82 1902 101 4 22 chr1 8954313 8954591 -233709762 + AluSq SINE Alu 1 273 -40 182 36 0 36 chr1 8954596 8954624 -233709729 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 640 173 0 0 chr1 8954840 8954944 -233709409 + AluJb SINE Alu 2 105 -207 787 271 268 8 chr1 8954944 8955328 -233709025 + MER20B DNA MER1_type 300 783 0 2053 126 7 0 chr1 8955458 8955760 -233708593 - AluSx SINE Alu -8 304 1 1996 125 7 3 chr1 8955780 8956077 -233708276 - AluSx SINE Alu -14 298 1 23 0 0 0 chr1 8956648 8956671 -233707682 + AT_rich Low_complexity Low_complexity 1 23 0 902 181 71 16 chr1 8956673 8956855 -233707498 - AluJo SINE Alu -35 277 86 2109 106 3 7 chr1 8956892 8957195 -233707158 + AluSq SINE Alu 5 306 -7 1662 104 0 4 chr1 8957366 8957596 -233706757 - AluSx SINE Alu -83 229 1 22 0 0 0 chr1 8958167 8958189 -233706164 + AT_rich Low_complexity Low_complexity 1 22 0 902 181 71 16 chr1 8958191 8958373 -233705980 - AluJo SINE Alu -35 277 86 2201 104 0 7 chr1 8958404 8958713 -233705640 + AluSx SINE Alu 1 307 -5 687 106 19 10 chr1 8959658 8959762 -233704591 - AluSq/x SINE Alu -179 133 29 1291 109 16 0 chr1 8959877 8960069 -233704284 + AluSg/x SINE Alu 103 297 -13 1607 86 125 16 chr1 8960070 8960326 -233704027 - AluSg1 SINE Alu -16 293 10 2166 98 3 0 chr1 8960338 8960635 -233703718 - AluY SINE Alu -13 298 1 2335 63 7 7 chr1 8960715 8961015 -233703338 - AluY SINE Alu -11 300 1 2404 61 0 14 chr1 8961668 8961965 -233702388 - AluY SINE Alu -18 293 1 1951 88 95 4 chr1 8961975 8962238 -233702115 - AluSq SINE Alu -24 289 3 2425 84 3 0 chr1 8963475 8963772 -233700581 - AluSx SINE Alu -14 298 1 2603 62 0 0 chr1 8963895 8964199 -233700154 - AluY SINE Alu -7 304 1 1906 164 0 0 chr1 8964240 8964521 -233699832 + AluJb SINE Alu 1 281 -31 183 42 0 0 chr1 8964521 8964545 -233699808 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 547 294 17 23 chr1 8964600 8964777 -233699576 + L2 LINE L2 3127 3302 -11 1437 170 22 107 chr1 8964777 8964910 -233699443 + AluJo SINE Alu 1 144 -158 2165 105 14 0 chr1 8964910 8965069 -233699284 - AluSc SINE Alu -19 290 124 2199 112 3 3 chr1 8965069 8965372 -233698981 - AluSg SINE Alu -7 303 1 2165 105 14 0 chr1 8965372 8965497 -233698856 - AluSc SINE Alu -185 124 2 1445 188 114 0 chr1 8965497 8965775 -233698578 - AluJb SINE Alu 0 307 1 1437 170 22 107 chr1 8965775 8965957 -233698396 + AluJo SINE Alu 142 291 -11 246 235 160 28 chr1 8965983 8965995 -233698358 - MIR SINE MIR -49 159 150 2377 76 0 20 chr1 8965995 8966296 -233698057 - AluY SINE Alu -16 295 1 246 235 160 28 chr1 8966296 8966407 -233697946 - MIR SINE MIR -58 150 21 2266 113 27 0 chr1 8966486 8966787 -233697566 + AluSx SINE Alu 1 309 -3 2366 112 0 0 chr1 8967314 8967618 -233696735 - AluSx SINE Alu -8 304 1 688 252 81 33 chr1 8968056 8968109 -233696244 - MIR SINE MIR -10 252 203 864 186 155 26 chr1 8968109 8968303 -233696050 + MER20B DNA MER1_type 1 219 0 688 252 81 33 chr1 8968303 8968459 -233695894 - MIR SINE MIR -59 203 33 1928 109 0 0 chr1 8968549 8968796 -233695557 - AluSx SINE Alu -15 297 51 432 227 23 11 chr1 8968796 8968884 -233695469 + L2 LINE L2 3181 3269 -3 910 227 38 30 chr1 8969295 8969329 -233695024 - MIR SINE MIR -10 252 220 2276 114 0 0 chr1 8969329 8969626 -233694727 - AluSg SINE Alu -13 297 1 1992 112 73 3 chr1 8969634 8969921 -233694432 - AluSg1 SINE Alu -2 307 1 910 227 38 30 chr1 8969921 8970121 -233694232 - MIR SINE MIR -48 214 4 180 111 0 0 chr1 8970222 8970249 -233694104 + (T)n Simple_repeat Simple_repeat 1 27 0 1171 214 95 18 chr1 8970249 8970585 -233693768 + L1ME1 LINE L1 5508 5869 -297 234 0 0 0 chr1 8970721 8970747 -233693606 + (A)n Simple_repeat Simple_repeat 1 26 0 2366 112 0 0 chr1 8971274 8971578 -233692775 - AluSx SINE Alu -8 304 1 688 252 81 33 chr1 8972013 8972066 -233692287 - MIR SINE MIR -10 252 203 864 186 155 26 chr1 8972066 8972260 -233692093 + MER20B DNA MER1_type 1 219 0 688 252 81 33 chr1 8972260 8972416 -233691937 - MIR SINE MIR -59 203 33 1928 109 0 0 chr1 8972506 8972753 -233691600 - AluSx SINE Alu -15 297 51 432 227 23 11 chr1 8972753 8972841 -233691512 + L2 LINE L2 3181 3269 -3 2249 114 0 0 chr1 8973286 8973585 -233690768 - AluSx SINE Alu -13 299 1 783 222 22 16 chr1 8973835 8974020 -233690333 - MER5A DNA MER1_type 0 189 4 1912 123 18 4 chr1 8975434 8975735 -233688618 - AluSx SINE Alu 0 305 1 2417 84 0 28 chr1 8975831 8976153 -233688200 - AluSq SINE Alu 0 313 1 339 78 0 0 chr1 8976885 8976936 -233687417 + (CA)n Simple_repeat Simple_repeat 2 52 0 2302 110 3 0 chr1 8977707 8978007 -233686346 + AluSg SINE Alu 1 301 -9 2361 99 0 0 chr1 8980476 8980770 -233683583 + AluSx SINE Alu 3 296 -16 1396 99 0 0 chr1 8981953 8982134 -233682219 - AluSg/x SINE Alu -4 308 128 284 0 28 0 chr1 8982134 8982170 -233682183 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2125 100 24 7 chr1 8982172 8982463 -233681890 - AluSg SINE Alu -14 296 1 2132 121 0 14 chr1 8982468 8982765 -233681588 - AluSq SINE Alu -20 293 1 1661 289 116 27 chr1 8982939 8983795 -233680558 - L2 LINE L2 -4 3309 2531 1780 136 4 25 chr1 8983795 8984074 -233680279 + AluJo SINE Alu 17 289 -23 2114 75 8 4 chr1 8984075 8984341 -233680012 + AluSq SINE Alu 33 299 -14 1661 289 116 27 chr1 8984341 8984741 -233679612 - L2 LINE L2 -781 2532 1945 2261 73 0 17 chr1 8984896 8985206 -233679147 - AluY SINE Alu 0 305 1 628 259 146 0 chr1 8985252 8985410 -233678943 - MER5A DNA MER1_type 0 189 9 826 270 116 3 chr1 8985591 8985928 -233678425 - L2 LINE L2 -1408 1906 1532 2447 92 0 3 chr1 8986034 8986338 -233678015 + AluSx SINE Alu 1 303 -9 2496 72 0 3 chr1 8986593 8986898 -233677455 - AluY SINE Alu -7 304 1 588 162 0 18 chr1 8987089 8987200 -233677153 + FLAM_A SINE Alu 33 141 -1 1947 145 24 7 chr1 8987211 8987508 -233676845 + AluJo SINE Alu 4 305 -7 332 156 0 0 chr1 8987568 8987632 -233676721 + FLAM SINE Alu 66 129 -4 230 217 14 72 chr1 8988595 8988664 -233675689 + MIR SINE MIR 20 84 -124 1017 151 6 67 chr1 8988897 8989076 -233675277 - AluSg/x SINE Alu -15 297 130 2137 77 26 4 chr1 8989083 8989355 -233674998 - AluSq SINE Alu -22 291 14 349 258 62 56 chr1 8989626 8989770 -233674583 + L1M4b LINE L1 23 479 -6376 722 188 0 16 chr1 8989770 8989898 -233674455 + FLAM_C SINE Alu 2 127 -16 2162 108 0 10 chr1 8989923 8990228 -233674125 + AluSq SINE Alu 12 313 0 2081 84 23 43 chr1 8990239 8990538 -233673815 - AluSp SINE Alu -18 295 3 2443 80 3 0 chr1 8990553 8990855 -233673498 - AluY SINE Alu -8 303 1 2408 114 0 0 chr1 8991122 8991430 -233672923 + AluSx SINE Alu 1 308 -4 2398 82 3 7 chr1 8991447 8991751 -233672602 + AluSq SINE Alu 1 303 -10 1636 168 39 39 chr1 8991936 8992246 -233672107 + AluJo SINE Alu 3 312 0 2067 150 10 3 chr1 8992253 8992559 -233671794 + AluJb SINE Alu 1 308 -4 557 214 39 73 chr1 8992569 8992687 -233671666 + L1M4b LINE L1 2220 2330 -4627 1352 181 102 8 chr1 8992687 8992952 -233671401 + AluJo SINE Alu 1 290 -22 557 214 39 73 chr1 8992952 8993039 -233671314 + L1M4b LINE L1 2330 2418 -4539 2271 114 3 0 chr1 8993039 8993338 -233671015 + AluSp SINE Alu 1 300 -13 537 222 139 0 chr1 8993985 8994129 -233670224 + MIR SINE MIR 3 166 -96 1903 162 13 19 chr1 8994833 8995147 -233669206 + AluJb SINE Alu 1 312 0 1818 171 3 7 chr1 8995427 8995714 -233668639 + AluJo SINE Alu 5 290 -22 2291 112 0 3 chr1 8996044 8996349 -233668004 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 8996646 8996669 -233667684 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 8996801 8996823 -233667530 + AT_rich Low_complexity Low_complexity 1 22 0 2221 75 3 3 chr1 8996926 8997208 -233667145 + AluY SINE Alu 24 305 -6 440 262 73 43 chr1 8997794 8997993 -233666360 - MIR SINE MIR -46 216 21 838 146 0 0 chr1 8999336 8999466 -233664887 - FRAM SINE Alu 0 40 1 2257 107 3 3 chr1 8999497 8999807 -233664546 + AluSx SINE Alu 3 312 0 1065 186 0 0 chr1 8999989 9000172 -233664181 - FRAM SINE Alu -1 175 1 287 277 84 0 chr1 9000346 9000429 -233663924 + L2 LINE L2 3165 3254 -18 2420 74 3 0 chr1 9000551 9000850 -233663503 + AluSp SINE Alu 1 300 -13 292 218 46 35 chr1 9001971 9002058 -233662295 - MIR SINE MIR -57 205 118 2064 115 35 0 chr1 9002624 9002912 -233661441 - AluSx SINE Alu -14 298 1 2493 70 0 0 chr1 9003192 9003491 -233660862 - AluY SINE Alu -12 299 1 884 246 8 54 chr1 9003812 9004004 -233660349 + MIR SINE MIR 2 183 -79 2082 116 3 3 chr1 9004004 9004310 -233660043 - AluSx SINE Alu 0 306 1 884 246 8 54 chr1 9004310 9004356 -233659997 + MIR SINE MIR 183 230 -32 900 178 41 0 chr1 9004722 9004868 -233659485 - AluJb SINE Alu -28 284 133 2413 70 0 20 chr1 9004871 9005172 -233659181 - AluY SINE Alu -16 295 1 1681 192 0 0 chr1 9005216 9005497 -233658856 + AluJb SINE Alu 1 281 -31 269 150 0 0 chr1 9005525 9005565 -233658788 - Alu SINE Alu -261 40 1 294 312 135 57 chr1 9005825 9005972 -233658381 + MIR3 SINE MIR 4 172 -90 1028 190 0 6 chr1 9005972 9006146 -233658207 + FAM SINE Alu 1 173 -2 294 312 135 57 chr1 9006146 9006225 -233658128 + MIR3 SINE MIR 172 243 -19 1062 107 0 57 chr1 9006325 9006508 -233657845 - AluSg/x SINE Alu 0 307 134 2260 111 3 7 chr1 9006509 9006816 -233657537 - AluSx SINE Alu -6 306 1 675 206 72 65 chr1 9006821 9006949 -233657404 - L1MC4 LINE L1 0 8042 7916 276 30 0 0 chr1 9006949 9006982 -233657371 + (TC)n Simple_repeat Simple_repeat 2 34 0 675 206 72 65 chr1 9006982 9007174 -233657179 - L1MC4 LINE L1 -126 7916 7720 2121 110 39 26 chr1 9007241 9007549 -233656804 - AluSx SINE Alu 0 312 1 1545 162 21 0 chr1 9007555 9007819 -233656534 - AluJo SINE Alu 0 308 40 234 248 80 32 chr1 9007819 9007944 -233656409 - L1ME LINE L1 -283 5887 5757 1918 156 7 10 chr1 9007945 9008246 -233656107 - AluJb SINE Alu -12 300 1 2180 111 0 3 chr1 9008256 9008544 -233655809 - AluSx SINE Alu -18 294 8 2397 88 3 0 chr1 9008559 9008853 -233655500 - AluSc SINE Alu -14 295 1 486 214 9 9 chr1 9008857 9008969 -233655384 - L1ME LINE L1 -404 5766 5655 839 251 59 12 chr1 9008985 9009240 -233655113 - L1MC4 LINE L1 -453 7589 7323 886 170 0 0 chr1 9009290 9009425 -233654928 - AluJb SINE Alu -25 287 153 2202 117 3 3 chr1 9009437 9009736 -233654617 - AluSc SINE Alu -10 299 1 265 106 64 21 chr1 9009836 9009883 -233654470 - L1ME1 LINE L1 -55 6111 6063 706 222 81 40 chr1 9009885 9010133 -233654220 - L1ME2 LINE L1 -82 6082 5825 2095 123 3 32 chr1 9010150 9010459 -233653894 - AluSq SINE Alu -13 300 1 943 133 0 0 chr1 9010459 9010594 -233653759 - AluSq/x SINE Alu -177 135 1 879 207 62 25 chr1 9010598 9010682 -233653671 - L1ME2 LINE L1 -346 5820 5741 1929 238 136 17 chr1 9010682 9011212 -233653141 - MLT1E LTR MaLR 0 593 1 879 207 62 25 chr1 9011212 9011369 -233652984 - L1ME2 LINE L1 -425 5741 5570 1649 154 6 41 chr1 9011421 9011740 -233652613 - AluJo SINE Alu -4 308 1 2310 214 39 114 chr1 9011740 9011880 -233652473 - L1ME2 LINE L1 -1730 4416 4267 2205 87 0 7 chr1 9011880 9012179 -233652174 - AluSx SINE Alu -15 297 1 2310 214 39 114 chr1 9012179 9012519 -233651834 - L1ME2 LINE L1 -1879 4267 3903 1402 168 7 41 chr1 9012519 9012811 -233651542 + AluJo SINE Alu 1 282 -30 2213 91 0 7 chr1 9012811 9013108 -233651245 - AluSg1 SINE Alu -14 295 1 2310 214 39 114 chr1 9013108 9013595 -233650758 - L1ME2 LINE L1 -2242 3904 3382 2393 84 0 0 chr1 9013595 9013904 -233650449 - AluSc SINE Alu 0 309 1 1779 163 0 0 chr1 9013907 9014202 -233650151 - AluSx SINE Alu -17 295 1 2310 214 39 114 chr1 9014202 9014338 -233650015 - L1ME2 LINE L1 -2611 3535 3390 1659 121 0 0 chr1 9014338 9014577 -233649776 - AluSq SINE Alu -74 239 1 1891 102 46 14 chr1 9014624 9014909 -233649444 - AluSg SINE Alu -16 294 1 233 250 56 42 chr1 9016232 9016304 -233648049 + L2 LINE L2 3191 3263 -9 315 285 177 54 chr1 9016399 9016763 -233647590 + L2 LINE L2 2847 3267 -5 239 79 26 0 chr1 9016765 9016803 -233647550 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1316 132 78 5 chr1 9016896 9017115 -233647238 + MER46A DNA MER2_type 1 235 -1 244 119 30 134 chr1 9018270 9018337 -233646016 + AluJ/FRAM SINE Alu 223 282 -20 2213 91 0 7 chr1 9018337 9018634 -233645719 - AluSg1 SINE Alu -14 295 1 1260 244 47 20 chr1 9018668 9019118 -233645235 - L1M4 LINE L1 -2210 3936 3475 2393 84 0 0 chr1 9019121 9019430 -233644923 - AluSc SINE Alu 0 309 1 1831 156 0 0 chr1 9019433 9019728 -233644625 - AluSx SINE Alu -17 295 1 388 292 18 18 chr1 9019750 9019863 -233644490 - L1M4 LINE L1 -2647 3499 3387 1659 121 0 0 chr1 9019865 9020104 -233644249 - AluSq SINE Alu -74 239 1 1753 271 100 25 chr1 9020109 9020151 -233644202 - L1MEc LINE L1 -5331 1065 1028 2272 70 0 13 chr1 9020151 9020450 -233643903 - AluY SINE Alu -16 295 1 1753 271 100 25 chr1 9020450 9020633 -233643720 - L1MEc LINE L1 -5368 1028 860 2339 75 0 0 chr1 9020633 9020928 -233643425 - AluSp SINE Alu -18 295 1 1753 271 100 25 chr1 9020928 9021658 -233642695 - L1MEc LINE L1 -5536 860 37 233 186 0 0 chr1 9021659 9021702 -233642651 - L2 LINE L2 -565 2749 2707 * 411 207 71 71 chr1 9021686 9021826 -233642527 - MIR SINE MIR -59 203 64 1805 139 37 7 chr1 9022348 9022642 -233641711 - AluJb SINE Alu -9 303 1 808 114 18 0 chr1 9022700 9022814 -233641539 - AluSq/x SINE Alu -196 116 1 239 178 44 100 chr1 9022885 9022975 -233641378 + AluSc SINE Alu 119 169 -130 1494 161 51 15 chr1 9023033 9023307 -233641046 - AluJo SINE Alu -17 295 12 2042 130 0 7 chr1 9023322 9023630 -233640723 - AluSx SINE Alu -6 306 1 509 230 139 24 chr1 9024113 9024278 -233640075 + MIR SINE MIR 50 233 -29 657 278 129 93 chr1 9024370 9025078 -233639275 - L2 LINE L2 0 3272 2508 1630 170 0 0 chr1 9025078 9025349 -233639004 - AluJo SINE Alu -15 297 27 657 278 129 93 chr1 9025349 9025644 -233638709 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9028526 9028548 -233635805 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9028604 9028640 -233635713 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9028740 9028763 -233635590 + AT_rich Low_complexity Low_complexity 1 23 0 1645 174 0 0 chr1 9029645 9029967 -233634386 + AluJo SINE Alu 1 322 0 2279 87 0 0 chr1 9031093 9031393 -233632960 - AluSg SINE Alu -10 300 1 1683 113 117 11 chr1 9031768 9032050 -233632303 + AluSx SINE Alu 1 312 0 1965 137 0 0 chr1 9032226 9032519 -233631834 - AluSx SINE Alu -19 293 1 2219 51 19 29 chr1 9032939 9033251 -233631102 - AluY SINE Alu -2 309 1 1545 170 25 11 chr1 9033283 9033565 -233630788 + AluJb SINE Alu 1 286 -26 1895 141 0 16 chr1 9034436 9034749 -233629604 - AluJo SINE Alu -4 308 1 962 96 0 0 chr1 9034825 9034960 -233629393 + AluSg/x SINE Alu 178 312 0 2139 119 7 0 chr1 9035365 9035675 -233628678 - AluSx SINE Alu 0 312 1 385 190 20 10 chr1 9036348 9036448 -233627905 + CT-rich Low_complexity Low_complexity 5 105 0 1786 116 11 22 chr1 9036454 9036731 -233627622 - AluSx SINE Alu -38 274 1 1387 162 102 4 chr1 9036829 9037095 -233627258 + AluJo SINE Alu 1 292 -20 31 0 0 0 chr1 9037164 9037195 -233627158 + AT_rich Low_complexity Low_complexity 1 31 0 668 203 8 0 chr1 9037195 9037318 -233627035 - FLAM_C SINE Alu -19 124 1 2043 109 0 0 chr1 9037326 9037602 -233626751 - AluSx SINE Alu -16 296 21 2084 92 13 13 chr1 9037913 9038218 -233626135 - AluSp SINE Alu -8 305 1 316 283 217 7 chr1 9038743 9038895 -233625458 - MIR SINE MIR -55 207 24 2192 57 54 3 chr1 9039836 9040132 -233624221 - AluY SINE Alu 0 311 1 2266 56 0 40 chr1 9040585 9040889 -233623464 - AluY SINE Alu -18 293 2 189 264 92 35 chr1 9041914 9042001 -233622352 + L2 LINE L2 3213 3304 -9 251 196 20 0 chr1 9042314 9042365 -233621988 + L2 LINE L2 3262 3313 0 238 285 8 32 chr1 9042862 9043000 -233621353 + T-rich Low_complexity Low_complexity 1 134 0 2180 84 3 0 chr1 9043607 9043893 -233620460 - AluY SINE Alu -24 287 1 2107 103 3 13 chr1 9044320 9044632 -233619721 - AluSc SINE Alu 0 309 1 225 211 0 0 chr1 9045718 9045770 -233618583 + A-rich Low_complexity Low_complexity 1 52 0 375 23 0 0 chr1 9045792 9045836 -233618517 + (TG)n Simple_repeat Simple_repeat 1 44 0 1160 156 8 181 chr1 9051414 9051773 -233612580 - AluJb SINE Alu -5 297 1 1881 144 3 25 chr1 9051788 9052107 -233612246 - AluJb SINE Alu 0 312 1 324 256 179 89 chr1 9052576 9052889 -233611464 - HAL1 LINE L1 -1292 1215 875 344 286 70 41 chr1 9053158 9053329 -233611024 - MIR SINE MIR -50 212 37 560 264 130 13 chr1 9053952 9054183 -233610170 + L3 LINE CR1 1279 1536 -41 1892 115 4 18 chr1 9054287 9054566 -233609787 + LTR8 LTR ERV1 417 691 0 854 185 33 0 chr1 9054586 9054737 -233609616 + FRAM SINE Alu 1 155 -21 1981 107 4 0 chr1 9054737 9055007 -233609346 + AluSx SINE Alu 1 271 -41 182 36 0 36 chr1 9055013 9055041 -233609312 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 640 173 0 0 chr1 9055257 9055361 -233608992 + AluJb SINE Alu 2 105 -207 728 279 268 8 chr1 9055361 9055745 -233608608 + MER20B DNA MER1_type 300 783 0 2053 126 7 0 chr1 9055875 9056177 -233608176 - AluSx SINE Alu -8 304 1 2069 105 7 0 chr1 9056197 9056493 -233607860 - AluSx SINE Alu -14 298 1 1536 155 119 10 chr1 9056666 9056969 -233607384 + MER44D DNA MER2_type 1 606 -3 228 293 17 0 chr1 9057008 9057066 -233607287 + LTR67 LTR ERVL 122 180 -377 2134 97 0 10 chr1 9057542 9057842 -233606511 - AluY SINE Alu -14 297 1 2158 103 7 0 chr1 9057842 9058143 -233606210 - AluSx SINE Alu -9 303 1 698 239 0 136 chr1 9058287 9058373 -233605980 - MIR SINE MIR -12 250 154 1728 175 0 3 chr1 9058373 9058665 -233605688 - AluJo SINE Alu -21 291 1 698 239 0 136 chr1 9058665 9058821 -233605532 - MIR SINE MIR -108 154 41 2538 191 57 45 chr1 9058960 9059364 -233604989 + L1ME1 LINE L1 5516 5914 -420 1895 137 10 13 chr1 9059364 9059671 -233604682 + AluJb SINE Alu 1 306 -6 2538 191 57 45 chr1 9059671 9059921 -233604432 + L1ME1 LINE L1 5914 6334 0 333 234 176 21 chr1 9060036 9060153 -233604200 + MIR SINE MIR 14 147 -61 229 191 0 21 chr1 9060187 9060234 -233604119 - L2 LINE L2 -1 3312 3267 180 309 94 40 chr1 9060357 9060506 -233603847 + L2 LINE L2 2551 2707 -607 1500 182 27 0 chr1 9060526 9060784 -233603569 + AluJo SINE Alu 1 265 -47 1003 119 0 13 chr1 9060992 9061143 -233603210 + AluSg1 SINE Alu 1 149 -160 280 335 12 24 chr1 9061317 9061487 -233602866 + T-rich Low_complexity Low_complexity 2 169 0 1983 143 0 0 chr1 9061670 9061963 -233602390 - AluSg SINE Alu -17 293 1 2145 95 3 0 chr1 9061965 9062259 -233602094 - AluY SINE Alu -16 295 1 1801 124 11 0 chr1 9062261 9062526 -233601827 - AluSx SINE Alu -11 301 34 1594 97 8 53 chr1 9062631 9062878 -233601475 - MER46A DNA MER2_type 0 236 1 2119 119 7 3 chr1 9062971 9063274 -233601079 + AluSx SINE Alu 1 304 -8 2294 90 3 0 chr1 9063280 9063581 -233600772 + AluSc SINE Alu 1 302 -7 1808 156 19 10 chr1 9063706 9064014 -233600339 - AluSx SINE Alu -1 311 1 23 33 0 0 chr1 9067699 9067729 -233596624 + AT_rich Low_complexity Low_complexity 1 30 0 294 346 6 13 chr1 9070397 9070553 -233593800 + CT-rich Low_complexity Low_complexity 1 155 0 210 143 0 0 chr1 9071820 9071855 -233592498 + (TG)n Simple_repeat Simple_repeat 1 35 0 640 276 51 70 chr1 9074037 9074349 -233590004 - L2 LINE L2 -8 3305 3000 27 0 0 0 chr1 9075058 9075085 -233589268 + AT_rich Low_complexity Low_complexity 1 27 0 337 283 10 30 chr1 9077225 9077324 -233587029 - MER81 DNA DNA 0 114 18 394 283 118 56 chr1 9078137 9078528 -233585825 - L1MC4a LINE L1 -297 5824 5759 2186 107 0 0 chr1 9078528 9078837 -233585516 + AluY SINE Alu 1 309 -2 1325 163 57 43 chr1 9079570 9079852 -233584501 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr1 9079852 9079882 -233584471 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1 9080711 9080733 -233583620 + AT_rich Low_complexity Low_complexity 1 22 0 306 225 36 63 chr1 9080961 9081072 -233583281 + MIR3 SINE MIR 101 208 0 914 43 58 0 chr1 9131815 9131953 -233532400 - MER30 DNA MER1_type -80 150 5 363 248 0 117 chr1 9132127 9132264 -233532089 + L1MCa LINE L1 1996 2116 -4310 236 266 115 35 chr1 9132413 9132438 -233531915 - L2 LINE L2 -154 3118 3096 1795 134 0 0 chr1 9132438 9132692 -233531661 + AluSx SINE Alu 1 254 -58 236 266 115 35 chr1 9132692 9132779 -233531574 - L2 LINE L2 -176 3096 2997 764 248 6 81 chr1 9134208 9134474 -233529879 - MIR SINE MIR 0 262 17 222 261 43 0 chr1 9134550 9134619 -233529734 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 9134625 9134678 -233529675 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 222 240 40 40 chr1 9134683 9134758 -233529595 + MIR SINE MIR 74 148 -114 2191 110 3 0 chr1 9134760 9135060 -233529293 + AluSx SINE Alu 2 302 -10 2315 81 7 3 chr1 9135108 9135415 -233528938 + AluSx SINE Alu 4 311 -1 273 221 0 186 chr1 9135415 9135614 -233528739 - Charlie5 DNA MER1_type -62 2550 2389 230 217 22 0 chr1 9136379 9136425 -233527928 - L2 LINE L2 -15 3298 3252 2259 105 3 0 chr1 9136486 9136790 -233527563 + AluSx SINE Alu 1 305 -7 188 250 0 0 chr1 9136792 9136832 -233527521 + L2 LINE L2 3214 3253 -19 574 271 21 7 chr1 9137682 9137826 -233526527 - MIR3 SINE MIR -62 146 1 187 355 66 0 chr1 9137972 9138048 -233526305 + MIR3 SINE MIR 74 154 -54 242 287 0 11 chr1 9138202 9138296 -233526057 - MER113 DNA MER1_type? -394 127 35 288 209 25 106 chr1 9139152 9139328 -233525025 + MIR SINE MIR 11 250 -12 365 300 60 27 chr1 9139472 9139622 -233524731 + MIR3 SINE MIR 40 194 -14 341 287 117 21 chr1 9141076 9141275 -233523078 + MIR3 SINE MIR 5 215 -47 594 202 30 98 chr1 9141359 9141562 -233522791 - MER5A DNA MER1_type 0 189 1 328 325 28 0 chr1 9141919 9142034 -233522319 - MIR3 SINE MIR -39 169 51 1854 120 56 0 chr1 9142128 9142424 -233521929 + AluSx SINE Alu 1 311 0 188 289 145 12 chr1 9142983 9143066 -233521287 - MIR SINE MIR -93 115 22 1796 102 0 0 chr1 9143401 9143658 -233520695 + AluSg SINE Alu 48 304 0 300 290 243 22 chr1 9143788 9144335 -233520018 + L2 LINE L2 2643 3306 -7 645 267 42 42 chr1 9145464 9145704 -233518649 - MIR SINE MIR -19 243 4 2096 129 3 0 chr1 9147384 9147686 -233516667 + AluSx SINE Alu 1 303 -9 196 321 49 12 chr1 9148301 9148382 -233515971 - MIR SINE MIR -77 185 102 2144 117 7 7 chr1 9148469 9148776 -233515577 - AluSx SINE Alu -5 307 1 633 266 59 20 chr1 9148974 9149177 -233515176 - MER20B DNA MER1_type -8 211 1 371 329 99 0 chr1 9149183 9149400 -233514953 + Charlie8 DNA MER1_type 4 228 -2189 1713 167 3 48 chr1 9149593 9149724 -233514629 + AluJo SINE Alu 1 136 -176 1930 120 67 0 chr1 9149724 9150008 -233514345 + AluSq SINE Alu 1 303 -10 1713 167 3 48 chr1 9150008 9150188 -233514165 + AluJo SINE Alu 136 298 -14 251 222 0 0 chr1 9150188 9150233 -233514120 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 205 327 34 93 chr1 9150476 9150681 -233513672 - L2 LINE L2 -4 3268 3076 1796 135 66 0 chr1 9150965 9151254 -233513099 - AluSx SINE Alu -4 308 1 304 329 64 43 chr1 9151256 9151396 -233512957 + L2 LINE L2 3125 3267 -5 428 247 123 26 chr1 9152034 9152188 -233512165 - MIR SINE MIR -21 241 73 2430 71 3 0 chr1 9152616 9152925 -233511428 + AluY SINE Alu 1 310 -1 1181 183 190 15 chr1 9153073 9153336 -233511017 - AluJb SINE Alu -3 309 1 2364 90 0 3 chr1 9154004 9154314 -233510039 + AluSq SINE Alu 1 309 -4 2480 49 0 7 chr1 9154915 9155220 -233509133 - AluY SINE Alu -8 303 1 352 331 47 0 chr1 9156783 9156910 -233507443 - L3 LINE CR1 -11 1566 1434 448 214 10 0 chr1 9157591 9157689 -233506664 + MER81 DNA DNA 1 99 -15 190 278 113 31 chr1 9157915 9158012 -233506341 - MIR3 SINE MIR -5 203 99 1947 115 3 72 chr1 9158469 9158794 -233505559 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 9159645 9159667 -233504686 + GC_rich Low_complexity Low_complexity 1 22 0 308 293 13 0 chr1 9159949 9160024 -233504329 + L2 LINE L2 3186 3261 -11 1662 134 69 79 chr1 9160025 9160330 -233504023 + AluSx SINE Alu 1 302 -10 255 226 32 0 chr1 9160378 9160440 -233503913 + CT-rich Low_complexity Low_complexity 2 65 0 379 287 87 7 chr1 9160465 9160527 -233503826 + Charlie8 DNA MER1_type 21 77 -264 2325 106 0 3 chr1 9160527 9160829 -233503524 + AluSx SINE Alu 1 301 -11 379 287 87 7 chr1 9160829 9160916 -233503437 + Charlie8 DNA MER1_type 77 182 -159 698 270 74 5 chr1 9161007 9161196 -233503157 + MIR SINE MIR 51 252 -10 1527 165 0 0 chr1 9161201 9161431 -233502922 + AluJo SINE Alu 1 230 -82 2225 107 0 0 chr1 9161470 9161784 -233502569 + AluSx SINE Alu 1 314 0 2214 119 0 0 chr1 9163000 9163294 -233501059 - AluSx SINE Alu -18 294 1 313 272 119 0 chr1 9163318 9163402 -233500951 - MIR SINE MIR -63 145 55 870 144 0 8 chr1 9163810 9163942 -233500411 + AluJb SINE Alu 6 136 -176 1573 137 144 4 chr1 9163943 9164206 -233500147 + AluSx SINE Alu 3 302 0 335 292 186 40 chr1 9164319 9164545 -233499808 - L2 LINE L2 0 3272 3014 191 83 0 0 chr1 9164568 9164592 -233499761 + L2 LINE L2 3199 3222 -91 523 280 151 5 chr1 9165010 9165228 -233499125 + L2 LINE L2 2500 2749 -565 1962 152 7 0 chr1 9165230 9165526 -233498827 + AluSx SINE Alu 1 298 -14 1750 225 62 18 chr1 9165703 9166198 -233498155 + L2 LINE L2 2787 3307 -6 2269 113 3 6 chr1 9166198 9166509 -233497844 + AluSq SINE Alu 1 310 -3 1106 143 6 6 chr1 9166509 9166684 -233497669 + AluSq SINE Alu 126 300 -13 226 237 151 11 chr1 9166714 9166807 -233497546 + L1ME4a LINE L1 6005 6110 -11 602 295 133 26 chr1 9168095 9168441 -233495912 - L2 LINE L2 0 3313 2931 535 106 11 11 chr1 9168602 9168696 -233495657 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 2315 86 7 3 chr1 9168854 9169144 -233495209 + AluSx SINE Alu 1 291 -21 565 123 40 0 chr1 9169183 9169284 -233495069 - MER5A DNA MER1_type -80 102 4 1485 176 26 40 chr1 9169372 9169674 -233494679 + AluJo SINE Alu 2 299 -13 520 212 33 46 chr1 9169787 9169938 -233494415 + L2 LINE L2 2632 2780 -534 721 236 16 147 chr1 9169949 9170372 -233493981 + L2 LINE L2 2888 3255 -17 355 260 24 79 chr1 9170457 9170584 -233493769 + L2 LINE L2 3141 3260 -12 361 304 84 9 chr1 9170978 9171113 -233493240 + MIR SINE MIR 21 163 -45 1706 220 31 96 chr1 9171162 9171217 -233493136 + MER77 LTR ERV1 84 141 -464 938 99 0 57 chr1 9171217 9171358 -233492995 + FLAM_C SINE Alu 1 133 0 1706 220 31 96 chr1 9171358 9171503 -233492850 + MER77 LTR ERV1 141 294 -311 2260 118 3 0 chr1 9171503 9171808 -233492545 + AluSx SINE Alu 1 306 -6 1706 220 31 96 chr1 9171808 9171999 -233492354 + MER77 LTR ERV1 294 432 -173 6501 117 144 24 chr1 9171999 9173140 -233491213 + MER52C LTR ERV1 1 1278 0 1706 220 31 96 chr1 9173140 9173300 -233491053 + MER77 LTR ERV1 432 601 -4 232 276 29 48 chr1 9173356 9173401 -233490952 + MIR SINE MIR 146 190 -72 2068 137 0 37 chr1 9173401 9173537 -233490816 + AluSx SINE Alu 1 141 -171 2399 88 3 3 chr1 9173537 9173843 -233490510 + AluSg SINE Alu 1 306 -4 2068 137 0 37 chr1 9173843 9174027 -233490326 + AluSx SINE Alu 141 309 -3 232 276 29 48 chr1 9174027 9174086 -233490267 + MIR SINE MIR 190 248 -14 417 241 292 15 chr1 9174121 9174316 -233490037 + MIR SINE MIR 14 262 0 2272 76 0 54 chr1 9174745 9175061 -233489292 - AluSg1 SINE Alu -10 299 1 1807 149 0 14 chr1 9175285 9175566 -233488787 + AluJb SINE Alu 1 277 -35 278 105 0 0 chr1 9175566 9175604 -233488749 - Alu SINE Alu -261 38 1 2117 94 4 0 chr1 9175628 9175917 -233488436 + AluSx SINE Alu 16 305 0 1368 208 83 0 chr1 9175920 9176247 -233488106 - LTR37A LTR ERV1 -55 371 18 2055 133 3 10 chr1 9176300 9176601 -233487752 + AluSq SINE Alu 2 300 -13 511 14 0 56 chr1 9176605 9176676 -233487677 - AluJb SINE Alu -161 151 85 1989 159 0 3 chr1 9176812 9177107 -233487246 + AluJo SINE Alu 2 295 -17 360 281 84 94 chr1 9177126 9177376 -233486977 - L2 LINE L2 -338 2976 2728 2131 123 0 13 chr1 9177376 9177676 -233486677 - AluSx SINE Alu -14 298 3 360 281 84 94 chr1 9177676 9177745 -233486608 - L2 LINE L2 -586 2728 2660 776 271 95 7 chr1 9177840 9178146 -233486207 + L1ME3A LINE L1 5498 5830 -340 2301 109 3 0 chr1 9178150 9178452 -233485901 + AluSq SINE Alu 1 303 -10 1788 178 3 10 chr1 9179551 9179843 -233484510 + AluJo SINE Alu 1 290 -22 231 88 0 0 chr1 9179844 9179878 -233484475 + (GA)n Simple_repeat Simple_repeat 1 34 0 375 92 13 40 chr1 9179879 9179955 -233484398 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1964 168 0 0 chr1 9180847 9181144 -233483209 + AluJo SINE Alu 1 297 -15 2137 137 3 3 chr1 9181146 9181459 -233482894 + AluSq SINE Alu 1 313 0 1043 114 0 0 chr1 9181473 9181604 -233482749 + AluSg SINE Alu 1 131 -179 2117 104 10 0 chr1 9181861 9182150 -233482203 - AluY SINE Alu -19 292 1 2402 81 3 16 chr1 9182150 9182459 -233481894 - AluSq SINE Alu -8 305 1 2142 130 0 0 chr1 9182470 9182763 -233481590 - AluSx SINE Alu -19 293 1 200 296 56 0 chr1 9182772 9182826 -233481527 + L2 LINE L2 3002 3058 -214 619 281 0 18 chr1 9183113 9183284 -233481069 + LTR67 LTR ERVL 4 171 -386 463 264 88 7 chr1 9183551 9183699 -233480654 - L1ME1 LINE L1 -8 6158 5999 927 177 17 43 chr1 9183699 9183817 -233480536 - MER63 DNA MER1_type 0 1060 940 2542 43 0 20 chr1 9183817 9184116 -233480237 + AluY SINE Alu 1 293 -18 927 177 17 43 chr1 9184116 9184159 -233480194 - MER63 DNA MER1_type -120 940 897 1980 166 7 0 chr1 9184159 9184467 -233479886 + AluJb SINE Alu 1 310 -2 927 177 17 43 chr1 9184467 9184536 -233479817 - MER63 DNA MER1_type -163 897 835 279 0 0 0 chr1 9184542 9184573 -233479780 + (TTA)n Simple_repeat Simple_repeat 2 32 0 699 195 0 9 chr1 9184576 9184689 -233479664 - FLAM_C SINE Alu -26 117 6 2279 181 12 2 chr1 9184691 9185104 -233479249 - MER63 DNA MER1_type -212 849 433 670 228 37 7 chr1 9185104 9185314 -233479039 - MER110A LTR ERV1 0 468 272 2597 61 7 0 chr1 9185314 9185624 -233478729 + AluSx SINE Alu 1 312 0 597 228 8 8 chr1 9185759 9185886 -233478467 + L2 LINE L2 3187 3313 0 322 358 25 31 chr1 9185904 9186066 -233478287 - L2 LINE L2 -218 3054 2894 211 323 85 49 chr1 9186051 9186215 -233478138 + MIR SINE MIR 14 183 -79 * 1159 119 0 0 chr1 9186287 9186438 -233477915 + AluSq/x SINE Alu 1 151 -162 1766 179 7 16 chr1 9186814 9187121 -233477232 + AluJo SINE Alu 1 304 -8 594 0 0 0 chr1 9187121 9187187 -233477166 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 207 69 0 0 chr1 9187186 9187215 -233477138 + (CAAGC)n Simple_repeat Simple_repeat 2 30 0 * 1929 130 0 7 chr1 9187219 9187488 -233476865 + AluSx SINE Alu 13 279 -33 186 43 0 0 chr1 9187488 9187511 -233476842 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 389 309 40 34 chr1 9187592 9187741 -233476612 - MIR SINE MIR -74 188 39 328 303 11 68 chr1 9187886 9188062 -233476291 + L1ME LINE L1 5350 5515 -655 211 270 180 34 chr1 9188148 9188237 -233476116 + MIR SINE MIR 123 224 -38 275 167 154 26 chr1 9188269 9188347 -233476006 + L2 LINE L2 3188 3275 -38 1914 118 0 18 chr1 9188477 9188581 -233475772 + AluSx SINE Alu 33 137 -175 2280 101 0 7 chr1 9188581 9188887 -233475466 + AluSx SINE Alu 1 304 -8 1914 118 0 18 chr1 9188887 9189054 -233475299 + AluSx SINE Alu 137 299 -13 1836 139 0 94 chr1 9189056 9189395 -233474958 + AluJb SINE Alu 1 307 -5 1963 112 23 3 chr1 9189421 9189724 -233474629 - AluSg SINE Alu -1 309 1 240 91 0 0 chr1 9189724 9189757 -233474596 - MER58 DNA MER1_type -32 2388 2356 288 221 104 0 chr1 9189769 9189846 -233474507 - MER58 DNA MER1_type -110 231 147 1788 169 27 3 chr1 9189848 9190143 -233474210 - AluSg SINE Alu -8 302 1 651 234 50 0 chr1 9190164 9190305 -233474048 - AluJb SINE Alu -23 289 142 354 290 25 6 chr1 9190446 9190608 -233473745 + (CA)n Simple_repeat Simple_repeat 2 166 0 427 302 13 0 chr1 9190648 9190797 -233473556 + (CA)n Simple_repeat Simple_repeat 2 152 0 421 321 12 2 chr1 9190851 9191362 -233472991 + (CA)n Simple_repeat Simple_repeat 1 516 0 260 256 22 0 chr1 9191390 9191578 -233472775 + (CA)n Simple_repeat Simple_repeat 1 192 0 275 272 123 21 chr1 9193390 9193818 -233470535 + L1ME LINE L1 5189 5671 -450 311 280 75 9 chr1 9193838 9193945 -233470408 + L1M4 LINE L1 3016 3129 -3017 * 554 346 97 29 chr1 9193942 9194486 -233469867 - L1 LINE L1 -3261 2885 2305 241 161 71 0 chr1 9194487 9194543 -233469810 - FAM SINE Alu 0 179 120 1081 180 10 15 chr1 9194543 9194749 -233469604 - AluJo SINE Alu -107 205 1 586 228 183 13 chr1 9195060 9195317 -233469036 - L1ME3 LINE L1 -1 6163 5876 1600 56 9 56 chr1 9195424 9195640 -233468713 - AluY SINE Alu -50 261 56 486 309 66 37 chr1 9195650 9196000 -233468353 + L1ME LINE L1 75 434 -5636 1228 297 80 54 chr1 9196236 9197237 -233467116 + L1ME LINE L1 570 1609 -4652 4066 116 7 0 chr1 9197237 9197787 -233466566 - MER41A LTR ERV1 0 554 1 1228 297 80 54 chr1 9197787 9198018 -233466335 + L1ME LINE L1 1609 1833 -4428 2108 140 0 0 chr1 9198024 9198316 -233466037 - AluSx SINE Alu -16 296 5 285 231 102 0 chr1 9198417 9198525 -233465828 + L1ME LINE L1 1842 1960 -4301 23 0 0 0 chr1 9198594 9198617 -233465736 + AT_rich Low_complexity Low_complexity 1 23 0 445 239 341 0 chr1 9198634 9198810 -233465543 - MIR SINE MIR -24 238 3 374 147 28 6 chr1 9198894 9199007 -233465346 - MLT2F LTR ERVL 0 663 479 2359 107 0 0 chr1 9199091 9199399 -233464954 - AluSg1 SINE Alu -1 308 1 580 330 122 42 chr1 9199406 9199948 -233464405 - L1M4 LINE L1 -1467 4679 4095 333 315 0 0 chr1 9200084 9200176 -233464177 - L2 LINE L2 0 3313 3222 186 71 0 0 chr1 9200518 9200546 -233463807 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2024 119 0 11 chr1 9200546 9200832 -233463521 - AluSx SINE Alu -29 283 1 1865 180 0 19 chr1 9201000 9201317 -233463036 - AluJb SINE Alu -1 311 1 1492 252 225 21 chr1 9201317 9202190 -233462163 - L2 LINE L2 -9 3304 2239 1045 195 20 76 chr1 9202190 9202493 -233461860 + L1MC4 LINE L1 7756 8041 -1 546 216 37 6 chr1 9202489 9202651 -233461702 + L1ME4a LINE L1 1615 1781 -4615 * 252 151 132 0 chr1 9202870 9202923 -233461430 - Charlie1 DNA MER1_type -4 2757 2698 587 251 120 0 chr1 9202923 9203098 -233461255 + L1MC4a LINE L1 7089 7284 -524 923 253 101 29 chr1 9203111 9203433 -233460920 + L1ME4a LINE L1 2134 2431 -3784 1866 124 87 0 chr1 9203433 9203708 -233460645 + AluSx SINE Alu 1 299 -13 923 253 101 29 chr1 9203708 9203990 -233460363 + L1ME4a LINE L1 2431 2737 -3478 944 245 162 10 chr1 9203998 9204312 -233460041 + L1ME4a LINE L1 5444 5805 -434 317 247 71 0 chr1 9204332 9204417 -233459936 + L1ME4a LINE L1 5866 5956 -283 639 85 47 0 chr1 9204523 9204629 -233459724 + Tigger7 DNA MER2_type 412 522 -1965 465 182 0 82 chr1 9204611 9204721 -233459632 + Tigger7 DNA MER2_type 2387 2487 0 * 27 29 0 0 chr1 9204757 9204791 -233459562 + AT_rich Low_complexity Low_complexity 1 34 0 1425 120 37 14 chr1 9205148 9205245 -233459108 - AluJo SINE Alu -91 221 128 297 0 0 0 chr1 9205245 9205278 -233459075 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1425 120 37 14 chr1 9205278 9205396 -233458957 - AluJo SINE Alu -184 128 1 317 255 142 7 chr1 9205396 9205537 -233458816 - L1ME LINE L1 -429 5692 5533 303 321 42 1 chr1 9205702 9205850 -233458503 + MIR SINE MIR 12 165 -60 199 247 112 11 chr1 9205959 9206048 -233458305 + MIR SINE MIR 165 262 0 367 240 10 30 chr1 9206053 9206153 -233458200 + L1ME4a LINE L1 6083 6180 -10 378 0 0 0 chr1 9207319 9207361 -233456992 + (TG)n Simple_repeat Simple_repeat 1 42 0 186 268 0 18 chr1 9207589 9207645 -233456708 + MIR SINE MIR 93 147 -61 268 340 35 28 chr1 9212265 9212406 -233451947 + MIR3 SINE MIR 22 163 -45 2264 78 0 3 chr1 9215822 9216117 -233448236 + AluSq SINE Alu 1 294 -19 2227 110 0 3 chr1 9216119 9216428 -233447925 + AluSx SINE Alu 1 308 -4 817 95 32 8 chr1 9216536 9216662 -233447691 + AluYb8 SINE Alu 1 129 -189 2356 92 0 0 chr1 9216664 9216969 -233447384 + AluSq SINE Alu 1 305 -8 250 303 129 28 chr1 9219706 9219884 -233444469 - L2 LINE L2 -1 3271 3076 1400 169 50 29 chr1 9220038 9220317 -233444036 + AluJo SINE Alu 20 304 -8 221 348 37 30 chr1 9220656 9220791 -233443562 + L2 LINE L2 3031 3166 -106 207 386 55 8 chr1 9221150 9221277 -233443076 - L2 LINE L2 -219 3053 2921 1056 262 98 27 chr1 9221755 9222163 -233442190 - MLT1J LTR MaLR 0 511 75 3530 204 44 40 chr1 9222542 9223669 -233440684 - L1ME2 LINE L1 0 6164 5039 1247 149 0 0 chr1 9223670 9223865 -233440488 - AluJb SINE Alu -30 282 88 756 234 26 48 chr1 9223883 9224064 -233440289 - L1ME2 LINE L1 -1113 5033 4856 2339 94 0 0 chr1 9224064 9224371 -233439982 + AluSq SINE Alu 1 307 -6 756 234 26 48 chr1 9224371 9224416 -233439937 - L1ME2 LINE L1 -1290 4856 4812 21 0 0 0 chr1 9224416 9224437 -233439916 + AT_rich Low_complexity Low_complexity 1 21 0 2659 214 22 5 chr1 9224443 9224998 -233439355 - L1MB8 LINE L1 -14 6164 5601 1146 204 23 87 chr1 9225033 9225290 -233439063 - L1ME1 LINE L1 -3 6443 6207 2201 110 0 0 chr1 9225290 9225598 -233438755 + AluSx SINE Alu 4 311 -1 1146 204 23 87 chr1 9225598 9225754 -233438599 - L1ME1 LINE L1 -239 6207 6043 210 188 58 0 chr1 9225754 9225823 -233438530 + (TA)n Simple_repeat Simple_repeat 1 73 0 388 240 39 10 chr1 9225855 9225959 -233438394 - L1ME1 LINE L1 -1024 5402 5296 318 269 0 77 chr1 9225989 9226093 -233438260 - L1ME1 LINE L1 -4336 2090 1995 2197 80 3 38 chr1 9226156 9226469 -233437884 - AluSp SINE Alu -3 310 9 210 305 17 0 chr1 9226530 9226589 -233437764 + CT-rich Low_complexity Low_complexity 1 60 0 254 271 36 100 chr1 9226590 9226649 -233437704 - MER58C DNA MER1_type -84 131 70 1825 107 9 79 chr1 9226649 9226967 -233437386 + AluSx SINE Alu 1 296 -16 254 271 36 100 chr1 9226967 9227047 -233437306 - MER58C DNA MER1_type -145 70 1 2534 193 37 19 chr1 9227054 9228006 -233436347 - L1ME LINE L1 -378 5786 4817 702 317 160 24 chr1 9230979 9231478 -233432875 + L1MC/D LINE L1 5254 5820 -1988 1615 150 66 0 chr1 9232519 9232806 -233431547 + 7SLRNA srpRNA srpRNA 1 306 -14 567 256 180 14 chr1 9234439 9234650 -233429703 + MIR SINE MIR 1 246 -16 2165 100 7 0 chr1 9234999 9235298 -233429055 - AluSx SINE Alu -11 301 1 2217 88 0 31 chr1 9235507 9235826 -233428527 + AluY SINE Alu 1 309 -2 1517 168 27 30 chr1 9235853 9235975 -233428378 + AluJb SINE Alu 3 124 -188 369 0 0 0 chr1 9235975 9236016 -233428337 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 1517 168 27 30 chr1 9236016 9236190 -233428163 + AluJb SINE Alu 124 298 -14 2022 116 0 49 chr1 9236190 9236517 -233427836 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 9236868 9236890 -233427463 + AT_rich Low_complexity Low_complexity 1 22 0 2254 105 0 0 chr1 9237023 9237328 -233427025 - AluSg SINE Alu -5 305 1 633 208 8 0 chr1 9240712 9240832 -233423521 + MIR SINE MIR 56 176 -86 326 264 170 63 chr1 9242601 9242760 -233421593 - L1MC5 LINE L1 -164 7797 7622 429 180 33 107 chr1 9243565 9243607 -233420746 - MER81 DNA DNA 0 114 70 2200 98 10 0 chr1 9243607 9243914 -233420439 - AluSx SINE Alu 0 312 3 429 180 33 107 chr1 9243914 9243993 -233420360 - MER81 DNA DNA -44 70 2 240 149 0 0 chr1 9245482 9245529 -233418824 + (GGA)n Simple_repeat Simple_repeat 2 48 0 282 29 0 0 chr1 9245867 9245902 -233418451 + (CCCCAG)n Simple_repeat Simple_repeat 3 37 0 26 64 0 0 chr1 9252339 9252386 -233411967 + AT_rich Low_complexity Low_complexity 1 47 0 378 270 33 19 chr1 9252510 9252637 -233411716 - L1MC4 LINE L1 -1339 6983 1994 21 57 0 0 chr1 9254302 9254337 -233410016 + GC_rich Low_complexity Low_complexity 1 35 0 265 139 25 63 chr1 9254478 9254557 -233409796 + G-rich Low_complexity Low_complexity 5 80 0 2167 115 0 6 chr1 9254886 9255200 -233409153 + AluSx SINE Alu 1 312 0 1221 57 11 11 chr1 9255225 9255401 -233408952 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 1358 174 70 40 chr1 9255414 9255712 -233408641 + AluJo SINE Alu 1 307 -5 844 177 61 0 chr1 9255712 9255876 -233408477 + AluJb SINE Alu 139 312 0 327 85 0 0 chr1 9255876 9255923 -233408430 + (GA)n Simple_repeat Simple_repeat 1 47 0 477 50 0 0 chr1 9255923 9255983 -233408370 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 935 231 27 60 chr1 9256154 9256452 -233407901 + Charlie4 DNA MER1_type 1 288 -1673 1823 78 0 0 chr1 9256479 9256709 -233407644 + AluSx SINE Alu 1 230 -82 182 296 0 0 chr1 9257282 9257326 -233407027 - MIR SINE MIR 0 262 219 24 60 0 30 chr1 9257326 9257350 -233407003 + AT_rich Low_complexity Low_complexity 1 24 -41 2135 108 0 10 chr1 9257350 9257638 -233406715 + AluSq SINE Alu 1 285 -28 202 74 0 0 chr1 9257638 9257665 -233406688 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 24 60 0 30 chr1 9257665 9257706 -233406647 + AT_rich Low_complexity Low_complexity 24 65 0 2226 94 85 51 chr1 9257716 9258068 -233406285 - THE1B LTR MaLR 0 364 1 1857 159 7 10 chr1 9258327 9258629 -233405724 + AluJb SINE Alu 1 301 -11 2178 110 3 10 chr1 9258962 9259270 -233405083 - AluSx SINE Alu 0 312 7 741 244 119 83 chr1 9259321 9259499 -233404854 - L2 LINE L2 -925 2389 2219 1170 226 78 10 chr1 9259499 9259795 -233404558 + MER33 DNA MER1_type 5 320 -4 741 244 119 83 chr1 9259795 9259828 -233404525 - L2 LINE L2 -1095 2219 2189 2074 138 0 0 chr1 9259828 9260124 -233404229 + AluJb SINE Alu 1 296 -16 741 244 119 83 chr1 9260124 9260383 -233403970 - L2 LINE L2 -1125 2189 1901 217 354 13 13 chr1 9260431 9260510 -233403843 - L2 LINE L2 -52 3220 3142 264 228 76 13 chr1 9260772 9260851 -233403502 - MIR SINE MIR -177 85 2 2052 104 0 31 chr1 9260917 9261233 -233403120 - AluSg SINE Alu 0 307 1 1591 167 10 33 chr1 9261235 9261535 -233402818 - AluJb SINE Alu -19 293 1 275 250 70 86 chr1 9261552 9261680 -233402673 + MIR SINE MIR 18 143 -65 457 328 79 11 chr1 9262576 9262765 -233401588 - MIR SINE MIR -11 251 50 268 259 49 12 chr1 9263018 9263099 -233401254 + MIR SINE MIR 104 187 -75 191 274 44 80 chr1 9263188 9263301 -233401052 + MIR3 SINE MIR 98 206 -2 2065 145 0 0 chr1 9263455 9263766 -233400587 + AluSx SINE Alu 1 311 -1 2246 101 0 0 chr1 9264055 9264353 -233400000 - AluSx SINE Alu -14 298 1 909 269 76 64 chr1 9264547 9265127 -233399226 - L1ME4a LINE L1 -1 6120 5534 201 184 0 0 chr1 9265815 9265853 -233398500 + MIR3 SINE MIR 160 197 -11 340 258 136 104 chr1 9266926 9267213 -233397140 + L2 LINE L2 2832 3127 -145 2461 80 0 0 chr1 9267281 9267592 -233396761 - AluSx SINE Alu -1 311 1 753 276 81 0 chr1 9267612 9267822 -233396531 + MIR SINE MIR 36 262 0 2283 78 3 0 chr1 9268286 9268580 -233395773 + AluSq SINE Alu 1 295 -18 292 254 41 107 chr1 9268683 9268805 -233395548 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 9269071 9269359 -233394994 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 9269397 9269569 -233394784 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 288 240 10 83 chr1 9269569 9269665 -233394688 - L2 LINE L2 0 3272 3184 415 315 0 15 chr1 9269756 9269886 -233394467 + MIR3 SINE MIR 31 158 -50 747 283 50 5 chr1 9270777 9270996 -233393357 + MIR SINE MIR 33 261 -1 218 333 39 0 chr1 9271014 9271092 -233393261 + MIR3 SINE MIR 106 186 -22 622 277 151 5 chr1 9272834 9273040 -233391313 + MIR SINE MIR 27 262 0 236 410 14 14 chr1 9273300 9273439 -233390914 + L2 LINE L2 3134 3272 0 1460 89 0 11 chr1 9273720 9273911 -233390442 + AluSx SINE Alu 1 189 -123 502 253 195 0 chr1 9274008 9274182 -233390171 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 9274182 9274219 -233390134 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2168 97 0 7 chr1 9274219 9274508 -233389845 - AluSq SINE Alu -26 287 1 268 305 34 38 chr1 9274723 9274881 -233389472 - MIR SINE MIR -62 146 3 391 313 8 16 chr1 9275420 9275548 -233388805 - MIR SINE MIR -45 217 91 221 345 0 46 chr1 9275539 9275626 -233388727 + L2 LINE L2 3189 3271 -1 * 499 346 33 33 chr1 9275669 9275912 -233388441 - MIR SINE MIR -15 247 5 202 263 63 42 chr1 9276661 9276756 -233387597 - MIR3 SINE MIR -104 104 8 * 772 259 78 9 chr1 9276696 9276928 -233387425 + MIR SINE MIR 11 258 -4 428 255 19 0 chr1 9277009 9277115 -233387238 - MER81 DNA DNA -1 113 6 234 313 108 0 chr1 9277704 9277787 -233386566 - MIR SINE MIR -60 202 111 295 300 194 50 chr1 9278316 9278476 -233385877 - MIR SINE MIR -44 218 36 484 289 69 39 chr1 9278510 9278714 -233385639 + MIR SINE MIR 18 227 -35 180 347 124 4 chr1 9279390 9279615 -233384738 + L2 LINE L2 2723 2974 -340 195 135 19 115 chr1 9279814 9279866 -233384487 - L2 LINE L2 0 3313 3267 195 319 44 35 chr1 9279982 9280095 -233384258 + L2 LINE L2 3141 3254 -18 2130 106 0 0 chr1 9280126 9280581 -233383772 - AluSx SINE Alu 0 455 1 679 279 90 21 chr1 9281328 9281561 -233382792 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 9281912 9281969 -233382384 + G-rich Low_complexity Low_complexity 2 56 0 195 314 57 29 chr1 9282255 9282360 -233381993 + MIR SINE MIR 85 192 -70 373 220 189 30 chr1 9282579 9282711 -233381642 - MIR3 SINE MIR -53 155 3 189 0 0 0 chr1 9283332 9283353 -233381000 + (CGG)n Simple_repeat Simple_repeat 3 23 0 39 74 0 0 chr1 9283357 9283438 -233380915 + GC_rich Low_complexity Low_complexity 1 81 0 240 35 0 0 chr1 9286401 9286430 -233377923 + (GGA)n Simple_repeat Simple_repeat 3 31 0 272 257 0 0 chr1 9286452 9286526 -233377827 + A-rich Low_complexity Low_complexity 1 74 0 218 273 15 0 chr1 9288546 9288612 -233375741 + L2 LINE L2 3247 3313 0 2402 42 7 0 chr1 9289365 9289652 -233374701 + AluY SINE Alu 1 289 -22 204 214 0 0 chr1 9291208 9291250 -233373103 + G-rich Low_complexity Low_complexity 3 44 0 231 36 0 0 chr1 9293980 9294008 -233370345 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 206 234 0 62 chr1 9294072 9294136 -233370217 + G-rich Low_complexity Low_complexity 5 64 0 37 0 0 0 chr1 9294480 9294517 -233369836 + AT_rich Low_complexity Low_complexity 1 37 0 200 98 0 24 chr1 9295430 9295471 -233368882 + (CGGGGG)n Simple_repeat Simple_repeat 4 43 0 290 311 66 0 chr1 9296454 9296576 -233367777 + L2 LINE L2 3143 3272 0 253 323 40 0 chr1 9296867 9296991 -233367362 - MER3 DNA MER1_type -70 139 11 357 376 44 6 chr1 9300338 9300519 -233363834 + MIR SINE MIR 61 248 -14 276 30 0 0 chr1 9300895 9300928 -233363425 + (CCCCAG)n Simple_repeat Simple_repeat 4 36 0 212 356 0 0 chr1 9301724 9301842 -233362511 + GA-rich Low_complexity Low_complexity 2 119 0 921 126 0 15 chr1 9302114 9302249 -233362104 - FLAM_C SINE Alu 0 133 1 21 57 0 0 chr1 9304817 9304852 -233359501 + AT_rich Low_complexity Low_complexity 1 35 0 349 237 12 0 chr1 9305485 9305654 -233358699 + (CA)n Simple_repeat Simple_repeat 2 172 0 256 230 22 11 chr1 9305670 9305848 -233358505 + (CA)n Simple_repeat Simple_repeat 1 180 0 509 272 17 0 chr1 9305875 9306048 -233358305 + (CA)n Simple_repeat Simple_repeat 1 176 0 376 256 17 4 chr1 9306114 9306478 -233357875 + (CA)n Simple_repeat Simple_repeat 1 368 0 203 249 11 11 chr1 9306554 9306731 -233357622 + (CA)n Simple_repeat Simple_repeat 2 178 0 223 141 31 0 chr1 9306804 9306868 -233357485 + (CA)n Simple_repeat Simple_repeat 2 67 0 180 0 0 0 chr1 9308081 9308101 -233356252 + (TCTCC)n Simple_repeat Simple_repeat 4 23 0 233 231 0 19 chr1 9308873 9308925 -233355428 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr1 9308925 9308945 -233355408 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 396 319 139 28 chr1 9309746 9309962 -233354391 + L2 LINE L2 3033 3272 0 250 264 88 48 chr1 9310044 9310169 -233354184 - MIR SINE MIR -119 143 14 210 143 0 0 chr1 9310901 9310936 -233353417 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 314 12 0 chr1 9310970 9311056 -233353297 - L2 LINE L2 -19 3294 3208 201 333 106 24 chr1 9313254 9313377 -233350976 - MIR SINE MIR -81 181 49 211 208 19 0 chr1 9316566 9316619 -233347734 + (CCCG)n Simple_repeat Simple_repeat 1 54 0 204 40 0 0 chr1 9325008 9325033 -233339320 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2056 121 0 0 chr1 9325035 9325317 -233339036 - AluSx SINE Alu -30 282 1 227 286 218 42 chr1 9325509 9325817 -233338536 + L2 LINE L2 2908 3269 -3 367 177 188 10 chr1 9328693 9328789 -233335564 + MER81 DNA DNA 2 114 0 195 129 0 0 chr1 9333097 9333128 -233331225 + (GGA)n Simple_repeat Simple_repeat 2 32 0 263 308 111 17 chr1 9333961 9334078 -233330275 - L3 LINE CR1 -60 1517 1390 227 100 0 25 chr1 9335179 9335219 -233329134 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 234 0 0 0 chr1 9337614 9337640 -233326713 + (A)n Simple_repeat Simple_repeat 1 26 0 24 77 0 0 chr1 9338116 9338168 -233326185 + GC_rich Low_complexity Low_complexity 1 52 0 28 99 0 0 chr1 9338267 9338358 -233325995 + GC_rich Low_complexity Low_complexity 1 91 0 31 26 0 0 chr1 9338733 9338771 -233325582 + GC_rich Low_complexity Low_complexity 1 38 0 672 119 0 0 chr1 9343366 9343484 -233320869 + (GA)n Simple_repeat Simple_repeat 2 119 0 333 0 0 0 chr1 9343484 9343521 -233320832 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 308 138 71 chr1 9344007 9344127 -233320226 + MIR SINE MIR 22 133 -129 1259 159 9 0 chr1 9344127 9344341 -233320012 + L1MB7 LINE L1 5969 6184 0 305 308 138 71 chr1 9344341 9344444 -233319909 + MIR SINE MIR 133 260 -2 294 73 0 0 chr1 9346349 9346390 -233317963 + (GA)n Simple_repeat Simple_repeat 1 41 0 204 291 182 27 chr1 9346888 9346998 -233317355 - MIR SINE MIR -79 183 57 871 198 0 55 chr1 9347118 9347320 -233317033 - MER58A DNA MER1_type 0 224 34 182 320 16 82 chr1 9351461 9351583 -233312770 - MIR3 SINE MIR -47 161 48 269 329 0 0 chr1 9352162 9352241 -233312112 + GA-rich Low_complexity Low_complexity 4 82 0 235 254 8 49 chr1 9352335 9352457 -233311896 + G-rich Low_complexity Low_complexity 2 118 0 342 156 0 0 chr1 9352994 9353058 -233311295 + GA-rich Low_complexity Low_complexity 2 65 0 213 314 71 0 chr1 9354175 9354245 -233310108 - L2 LINE L2 -10 3262 3188 2172 113 13 0 chr1 9354256 9354556 -233309797 + AluSx SINE Alu 1 304 -8 382 283 32 34 chr1 9354571 9354707 -233309646 + MIR SINE MIR 37 170 -61 285 254 127 36 chr1 9354710 9354820 -233309533 - L2 LINE L2 -5 3308 3189 260 246 0 0 chr1 9354841 9354898 -233309455 + MIR SINE MIR 206 262 0 2174 187 29 55 chr1 9354940 9355467 -233308886 + L1MB5 LINE L1 5626 6166 -17 2141 117 0 0 chr1 9355467 9355757 -233308596 + AluSq SINE Alu 1 290 -23 285 29 0 0 chr1 9355762 9355796 -233308557 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2174 187 29 55 chr1 9355796 9355847 -233308506 + L1MB5 LINE L1 6170 6183 0 192 97 0 0 chr1 9356694 9356725 -233307628 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2226 102 3 7 chr1 9357429 9357734 -233306619 + AluSx SINE Alu 2 305 -7 226 250 75 50 chr1 9357751 9357871 -233306482 - MIR SINE MIR -133 129 7 443 215 0 43 chr1 9358891 9359077 -233305276 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 276 275 0 33 chr1 9359093 9359275 -233305078 + (CACCC)n Simple_repeat Simple_repeat 1 176 0 424 235 0 39 chr1 9359354 9359719 -233304634 + (CACCC)n Simple_repeat Simple_repeat 1 350 0 195 42 0 0 chr1 9360785 9360809 -233303544 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 282 272 194 7 chr1 9361429 9361576 -233302777 - MIR SINE MIR -59 149 13 24 0 0 0 chr1 9361756 9361780 -233302573 + AT_rich Low_complexity Low_complexity 1 24 0 328 103 0 59 chr1 9362272 9362340 -233302013 - AluSq SINE Alu -1 301 238 1630 125 0 20 chr1 9362373 9362621 -233301732 - AluSq SINE Alu -70 243 1 448 374 27 0 chr1 9363479 9363666 -233300687 + MIR SINE MIR 40 231 -31 262 248 208 0 chr1 9369404 9369505 -233294848 - MIR SINE MIR 0 262 141 231 146 0 0 chr1 9369507 9369548 -233294805 + (CTA)n Simple_repeat Simple_repeat 3 43 0 322 312 39 19 chr1 9369560 9369714 -233294639 - MIR SINE MIR -2 260 104 33 0 0 0 chr1 9371990 9372023 -233292330 + AT_rich Low_complexity Low_complexity 1 33 0 194 133 0 44 chr1 9372490 9372535 -233291818 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 417 301 102 6 chr1 9372973 9373211 -233291142 + Charlie1a DNA MER1_type 2 268 -1187 2095 104 3 0 chr1 9373211 9373498 -233290855 - AluSx SINE Alu -4 308 21 988 129 0 0 chr1 9373507 9373669 -233290684 - AluSx SINE Alu 0 307 146 563 44 0 0 chr1 9373669 9373737 -233290616 - AluSx SINE Alu -245 68 1 3523 194 72 81 chr1 9373742 9374229 -233290124 + Charlie1a DNA MER1_type 264 754 -2007 2157 114 0 0 chr1 9374229 9374519 -233289834 + AluSg SINE Alu 1 290 -20 3523 194 72 81 chr1 9374519 9374704 -233289649 + Charlie1a DNA MER1_type 754 939 -1822 1870 163 3 6 chr1 9374704 9375017 -233289336 + AluJb SINE Alu 1 312 0 3523 194 72 81 chr1 9375017 9375446 -233288907 + Charlie1a DNA MER1_type 939 1357 -1404 2187 107 13 0 chr1 9375446 9375745 -233288608 + AluSx SINE Alu 1 303 -9 3523 194 72 81 chr1 9375745 9375844 -233288509 + Charlie1a DNA MER1_type 1357 1455 0 402 390 26 40 chr1 9376847 9377119 -233287234 - L2 LINE L2 -5 3267 3000 621 280 109 25 chr1 9377130 9377369 -233286984 + MIR SINE MIR 2 260 -2 228 135 0 0 chr1 9378060 9378097 -233286256 + (GA)n Simple_repeat Simple_repeat 2 38 0 251 325 42 17 chr1 9379819 9379939 -233284414 - MER5A DNA MER1_type -66 123 1 268 271 125 0 chr1 9379944 9380040 -233284313 - MIR SINE MIR -106 156 49 236 358 65 16 chr1 9380084 9380207 -233284146 - L2 LINE L2 -37 3235 3107 495 330 112 32 chr1 9381364 9381649 -233282704 - L2 LINE L2 -1 3312 3005 234 0 0 0 chr1 9382322 9382348 -233282005 + (T)n Simple_repeat Simple_repeat 1 26 0 426 342 38 8 chr1 9383473 9383669 -233280684 - MIR SINE MIR -35 227 25 189 279 44 15 chr1 9383766 9383834 -233280519 + MIR3 SINE MIR 114 183 -25 1870 152 0 29 chr1 9384074 9384390 -233279963 + AluJo SINE Alu 5 311 -1 1858 122 50 0 chr1 9384408 9384686 -233279667 - AluSx SINE Alu -20 292 1 206 121 0 0 chr1 9385184 9385217 -233279136 + (TA)n Simple_repeat Simple_repeat 1 33 0 2266 106 0 3 chr1 9386105 9386408 -233277945 + AluSx SINE Alu 1 302 -10 192 77 0 0 chr1 9387254 9387280 -233277073 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 982 204 11 0 chr1 9388891 9389067 -233275286 + MER45A DNA AcHobo 1 178 0 254 348 30 80 chr1 9389072 9389273 -233275080 + MIR SINE MIR 28 218 -44 180 286 48 16 chr1 9389445 9389508 -233274845 - MIR SINE MIR -117 145 81 2454 47 0 7 chr1 9391221 9391521 -233272832 - AluY SINE Alu -13 298 1 266 314 215 26 chr1 9391817 9392008 -233272345 - MIR SINE MIR -15 247 21 2217 92 0 7 chr1 9392657 9392950 -233271403 - AluSc SINE Alu -18 291 1 1415 157 79 59 chr1 9393666 9393971 -233270382 - AluJo SINE Alu -1 311 1 299 283 29 92 chr1 9393972 9394021 -233270332 + MIR SINE MIR 101 152 -110 2161 100 3 28 chr1 9394021 9394340 -233270013 + AluSx SINE Alu 1 311 -1 299 283 29 92 chr1 9394340 9394463 -233269890 + MIR SINE MIR 152 262 0 242 54 0 27 chr1 9394472 9394509 -233269844 + (TTA)n Simple_repeat Simple_repeat 2 37 0 896 164 10 70 chr1 9396095 9396157 -233268196 - MER53 DNA DNA 0 189 125 2127 101 0 3 chr1 9396157 9396467 -233267886 + AluSq SINE Alu 1 309 0 896 164 10 70 chr1 9396467 9396604 -233267749 - MER53 DNA DNA -64 125 1 762 252 118 50 chr1 9397257 9397818 -233266535 + L2 LINE L2 2710 3309 -4 715 310 139 20 chr1 9400672 9400909 -233263444 + L2 LINE L2 2439 2647 -666 2276 114 0 0 chr1 9400909 9401215 -233263138 + AluSx SINE Alu 1 306 -6 715 310 139 20 chr1 9401215 9401694 -233262659 + L2 LINE L2 2647 3243 -70 2392 100 0 0 chr1 9401724 9402035 -233262318 - AluSx SINE Alu -1 311 1 380 325 140 13 chr1 9403772 9403929 -233260424 - MIR3 SINE MIR -11 197 21 290 322 89 20 chr1 9406697 9406843 -233257510 + MIR3 SINE MIR 28 183 -25 381 361 30 0 chr1 9407028 9407161 -233257192 + L2 LINE L2 3106 3242 -30 2230 110 0 0 chr1 9407266 9407566 -233256787 - AluSx SINE Alu -12 300 1 193 343 14 14 chr1 9407714 9407784 -233256569 - L2 LINE L2 -9 3263 3194 414 364 66 0 chr1 9407844 9408042 -233256311 - MIR SINE MIR -24 238 28 216 0 0 0 chr1 9409608 9409632 -233254721 + (CA)n Simple_repeat Simple_repeat 1 24 0 957 247 18 5 chr1 9409659 9409878 -233254475 + MIR SINE MIR 2 223 -39 191 297 34 109 chr1 9410132 9410307 -233254046 - MIR SINE MIR -30 232 71 2062 116 0 0 chr1 9411603 9411921 -233252432 - AluSx SINE Alu 0 318 1 2252 96 3 0 chr1 9412262 9412564 -233251789 + AluSx SINE Alu 1 303 -9 613 191 17 0 chr1 9412686 9412801 -233251552 + MER3 DNA MER1_type 52 168 -41 2205 93 3 0 chr1 9412930 9413220 -233251133 - AluSx SINE Alu -21 291 1 519 302 61 14 chr1 9413222 9413434 -233250919 - MIR SINE MIR -6 256 35 1802 186 0 0 chr1 9413476 9413788 -233250565 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 9414717 9414739 -233249614 + AT_rich Low_complexity Low_complexity 1 22 0 348 24 0 0 chr1 9415061 9415102 -233249251 + (TCC)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr1 9416429 9416454 -233247899 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 414 249 13 24 chr1 9420456 9420616 -233243737 + MIR SINE MIR 48 203 -59 414 260 6 17 chr1 9420995 9421176 -233243177 + (CA)n Simple_repeat Simple_repeat 2 180 0 267 294 5 27 chr1 9421295 9421479 -233242874 + (CA)n Simple_repeat Simple_repeat 1 180 0 279 305 6 6 chr1 9421704 9421878 -233242475 + (CA)n Simple_repeat Simple_repeat 1 174 0 198 0 0 0 chr1 9422683 9422705 -233241648 + (T)n Simple_repeat Simple_repeat 1 22 0 375 298 60 36 chr1 9423922 9424090 -233240263 + L1ME4a LINE L1 5893 6064 -57 409 329 119 9 chr1 9424125 9424344 -233240009 + MIR SINE MIR 9 251 -11 475 303 86 0 chr1 9425152 9425327 -233239026 - MIR SINE MIR -26 236 47 357 24 0 0 chr1 9426650 9426692 -233237661 + (TG)n Simple_repeat Simple_repeat 2 43 0 2306 89 3 0 chr1 9426994 9427297 -233237056 + AluSx SINE Alu 1 304 -8 214 327 114 30 chr1 9427335 9427537 -233236816 - MIR SINE MIR -12 250 32 619 246 149 0 chr1 9427737 9427912 -233236441 + MER3 DNA MER1_type 9 209 0 2020 118 0 7 chr1 9427958 9428269 -233236084 - AluSx SINE Alu 0 309 1 278 148 0 19 chr1 9428421 9428475 -233235878 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 730 114 11 45 chr1 9428475 9428651 -233235702 + (TTCC)n Simple_repeat Simple_repeat 2 171 0 332 181 19 29 chr1 9428625 9428730 -233235623 + CT-rich Low_complexity Low_complexity 3 106 0 * 209 257 176 42 chr1 9429295 9429463 -233234890 - MIR SINE MIR -54 154 3 478 250 91 8 chr1 9429963 9430095 -233234258 - MIR SINE MIR -37 225 83 441 276 26 2 chr1 9430482 9430664 -233233689 - MIR SINE MIR -50 212 28 192 214 0 0 chr1 9431036 9431092 -233233261 + (CA)n Simple_repeat Simple_repeat 2 57 0 351 96 0 0 chr1 9432928 9432980 -233231373 + (TC)n Simple_repeat Simple_repeat 1 52 0 290 87 22 0 chr1 9435127 9435173 -233229180 + (GA)n Simple_repeat Simple_repeat 2 48 0 180 77 0 0 chr1 9435718 9435744 -233228609 + (C)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr1 9436260 9436282 -233228071 + AT_rich Low_complexity Low_complexity 1 22 0 426 108 0 0 chr1 9437538 9437603 -233226750 + (TG)n Simple_repeat Simple_repeat 1 65 0 213 229 49 16 chr1 9438285 9438407 -233225946 + (CCCG)n Simple_repeat Simple_repeat 2 127 0 240 100 0 0 chr1 9439793 9439833 -233224520 + (CTCG)n Simple_repeat Simple_repeat 2 41 0 205 225 36 90 chr1 9440632 9440743 -233223610 - L2 LINE L2 -105 3208 3104 924 121 8 0 chr1 9440764 9440896 -233223457 + FLAM_C SINE Alu 1 133 0 298 257 14 0 chr1 9441994 9442068 -233222285 - MIR3 SINE MIR -37 171 97 732 246 62 7 chr1 9442138 9442353 -233222000 + MIR SINE MIR 36 261 -1 616 279 149 32 chr1 9443127 9443599 -233220754 + L2 LINE L2 2760 3288 -25 247 337 71 0 chr1 9444028 9444126 -233220227 + L2 LINE L2 3167 3271 -1 548 241 68 19 chr1 9444244 9444406 -233219947 - MIR SINE MIR -3 259 90 2008 151 0 0 chr1 9444658 9444969 -233219384 + AluSx SINE Alu 1 311 -1 2246 94 0 0 chr1 9445258 9445556 -233218797 - AluSx SINE Alu -14 298 1 993 277 92 59 chr1 9445750 9446381 -233217972 - L1ME4a LINE L1 -1 6120 5469 199 184 0 0 chr1 9447018 9447056 -233217297 + MIR3 SINE MIR 160 197 -11 317 254 136 104 chr1 9448129 9448416 -233215937 + L2 LINE L2 2832 3127 -145 2436 80 0 0 chr1 9448484 9448795 -233215558 - AluSx SINE Alu -1 311 1 733 252 95 14 chr1 9448815 9449025 -233215328 + MIR SINE MIR 36 262 0 2258 78 3 0 chr1 9449489 9449783 -233214570 + AluSq SINE Alu 1 295 -18 281 229 41 107 chr1 9449886 9450008 -233214345 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 9450274 9450562 -233213791 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 9450600 9450772 -233213581 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 282 240 10 83 chr1 9450772 9450868 -233213485 - L2 LINE L2 0 3272 3184 402 315 0 15 chr1 9450959 9451089 -233213264 + MIR3 SINE MIR 31 158 -50 713 283 50 5 chr1 9451981 9452200 -233212153 + MIR SINE MIR 33 261 -1 201 333 39 0 chr1 9452218 9452296 -233212057 + MIR3 SINE MIR 106 186 -22 587 253 165 5 chr1 9454036 9454242 -233210111 + MIR SINE MIR 27 262 0 236 410 14 14 chr1 9454502 9454641 -233209712 + L2 LINE L2 3134 3272 0 1460 89 0 11 chr1 9454921 9455112 -233209241 + AluSx SINE Alu 1 189 -123 502 253 195 0 chr1 9455209 9455383 -233208970 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 9455383 9455420 -233208933 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2168 97 0 7 chr1 9455420 9455709 -233208644 - AluSq SINE Alu -26 287 1 295 304 34 38 chr1 9455924 9456082 -233208271 - MIR3 SINE MIR -62 146 3 391 313 8 16 chr1 9456621 9456749 -233207604 - MIR SINE MIR -45 217 91 221 345 0 46 chr1 9456740 9456827 -233207526 + L2 LINE L2 3189 3271 -1 * 499 346 33 33 chr1 9456870 9457113 -233207240 - MIR SINE MIR -15 247 5 202 263 63 42 chr1 9457862 9457957 -233206396 - MIR3 SINE MIR -104 104 8 * 772 259 78 9 chr1 9457897 9458129 -233206224 + MIR SINE MIR 11 258 -4 428 255 19 0 chr1 9458210 9458316 -233206037 - MER81 DNA DNA -1 113 6 234 313 108 0 chr1 9458905 9458988 -233205365 - MIR SINE MIR -60 202 111 295 300 194 50 chr1 9459517 9459677 -233204676 - MIR SINE MIR -44 218 36 484 289 69 39 chr1 9459711 9459915 -233204438 + MIR SINE MIR 18 227 -35 180 347 124 4 chr1 9460591 9460816 -233203537 + L2 LINE L2 2723 2974 -340 195 135 19 115 chr1 9461015 9461067 -233203286 - L2 LINE L2 0 3313 3267 195 319 44 35 chr1 9461183 9461296 -233203057 + L2 LINE L2 3141 3254 -18 657 96 0 0 chr1 9461328 9461422 -233202931 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2273 115 0 0 chr1 9461422 9461734 -233202619 - AluSx SINE Alu 0 312 1 679 279 90 21 chr1 9462481 9462714 -233201639 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 9463065 9463122 -233201231 + G-rich Low_complexity Low_complexity 2 56 0 195 314 57 29 chr1 9463408 9463513 -233200840 + MIR SINE MIR 85 192 -70 373 220 189 30 chr1 9463732 9463864 -233200489 - MIR3 SINE MIR -53 155 3 1945 152 7 3 chr1 9464257 9464566 -233199787 - AluSx SINE Alu -2 310 1 259 349 106 8 chr1 9464622 9464754 -233199599 - MIR SINE MIR -62 200 56 316 358 25 31 chr1 9464786 9464948 -233199405 + L2 LINE L2 2894 3054 -218 186 43 0 0 chr1 9464956 9464979 -233199374 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 576 214 9 0 chr1 9464980 9465092 -233199261 - L2 LINE L2 -14 3299 3187 2426 87 0 0 chr1 9465226 9465538 -233198815 - AluSx SINE Alu 0 312 1 1926 135 10 7 chr1 9465541 9465845 -233198508 - AluJb SINE Alu -7 305 1 579 269 16 42 chr1 9466093 9466286 -233198067 + MIR3 SINE MIR 15 202 -6 388 269 134 47 chr1 9466786 9466935 -233197418 - MIR SINE MIR 0 262 101 1919 140 24 3 chr1 9467000 9467292 -233197061 + AluSx SINE Alu 1 298 -14 318 354 0 0 chr1 9468030 9468126 -233196227 + L1M4 LINE L1 3074 3169 -2977 354 291 28 31 chr1 9468648 9468841 -233195512 + MIR SINE MIR 34 226 -36 611 269 76 6 chr1 9468848 9469019 -233195334 - MIR SINE MIR -1 261 79 2189 107 0 0 chr1 9469630 9469928 -233194425 + AluSx SINE Alu 1 298 -14 37 0 0 21 chr1 9469944 9469957 -233194396 + AT_rich Low_complexity Low_complexity 1 13 -34 2187 103 0 3 chr1 9469957 9470248 -233194105 - AluSg SINE Alu -20 290 1 37 0 0 21 chr1 9470248 9470282 -233194071 + AT_rich Low_complexity Low_complexity 13 47 0 516 278 14 28 chr1 9470451 9470595 -233193758 - MIR SINE MIR -113 149 8 255 236 0 0 chr1 9470712 9470767 -233193586 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 356 292 102 7 chr1 9470769 9470906 -233193447 - MIR SINE MIR -75 187 38 225 0 0 0 chr1 9472356 9472381 -233191972 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1624 158 0 45 chr1 9472440 9472750 -233191603 + AluJb SINE Alu 1 296 -16 356 365 105 30 chr1 9472992 9473192 -233191161 + L1MC4a LINE L1 5721 5935 -1873 533 281 95 50 chr1 9474111 9474353 -233190000 + MIR SINE MIR 8 260 -2 296 242 0 0 chr1 9474862 9474928 -233189425 - MIR SINE MIR -138 124 59 2187 125 0 0 chr1 9475463 9475775 -233188578 - AluSx SINE Alu 0 312 1 212 200 13 53 chr1 9476564 9476639 -233187714 + L2 LINE L2 2967 3038 -234 2011 155 0 0 chr1 9476786 9477090 -233187263 + AluJb SINE Alu 1 304 -8 400 274 132 57 chr1 9477090 9477302 -233187051 - L2 LINE L2 -1 3312 3085 1032 151 0 0 chr1 9477397 9477576 -233186777 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 1089 136 0 0 chr1 9477577 9477754 -233186599 + (CTCA)n Simple_repeat Simple_repeat 3 179 0 285 98 0 0 chr1 9477755 9477796 -233186557 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 486 289 111 0 chr1 9478888 9479068 -233185285 - MIR SINE MIR 0 262 63 215 167 0 0 chr1 9479729 9479765 -233184588 + MIR SINE MIR 110 145 -63 479 297 180 28 chr1 9479767 9479917 -233184436 - L2 LINE L2 -5 3308 3182 2150 92 0 7 chr1 9479917 9480224 -233184129 + AluSx SINE Alu 1 305 0 479 297 180 28 chr1 9480224 9480395 -233183958 - L2 LINE L2 -131 3182 2937 255 170 21 0 chr1 9480718 9480765 -233183588 - MIR3 SINE MIR -52 156 109 949 188 0 0 chr1 9481075 9481261 -233183092 + FRAM SINE Alu 1 176 0 550 244 6 70 chr1 9481329 9481501 -233182852 + MIR SINE MIR 26 186 -76 343 336 52 0 chr1 9481605 9481721 -233182632 - MIR SINE MIR -124 138 17 222 336 8 0 chr1 9482566 9482688 -233181665 + (TG)n Simple_repeat Simple_repeat 1 123 0 2334 90 0 10 chr1 9484018 9484329 -233180024 + AluY SINE Alu 1 308 -3 463 247 11 144 chr1 9485081 9485352 -233179001 - MIR SINE MIR -9 253 19 1377 271 129 0 chr1 9485514 9485540 -233178813 + L2 LINE L2 2357 2378 -936 2233 95 3 0 chr1 9485540 9485836 -233178517 - AluSx SINE Alu -15 297 1 1377 271 129 0 chr1 9485836 9486322 -233178031 + L2 LINE L2 2378 2935 -379 317 280 32 96 chr1 9486449 9486617 -233177736 + L2 LINE L2 2945 3094 -219 1668 190 0 14 chr1 9486617 9486945 -233177408 - AluJo SINE Alu 0 326 3 317 280 32 96 chr1 9486945 9487025 -233177328 + L2 LINE L2 3094 3178 -135 1842 216 70 19 chr1 9487059 9487684 -233176669 - L1MEc LINE L1 -4948 1448 792 1697 188 3 0 chr1 9487701 9487988 -233176365 - AluJb SINE Alu -24 288 1 727 152 7 0 chr1 9487988 9488126 -233176227 - L1MC3 LINE L1 -6 7779 7641 621 132 0 99 chr1 9488126 9488247 -233176106 + FRAM SINE Alu 65 173 -3 643 218 58 0 chr1 9488253 9488409 -233175944 - L1MD3 LINE L1 -146 7849 7685 1085 148 94 20 chr1 9488409 9488612 -233175741 - AluJo SINE Alu -16 296 79 3427 215 89 30 chr1 9488612 9489234 -233175119 - L1MC3 LINE L1 -308 7477 6893 2028 152 7 0 chr1 9489234 9489544 -233174809 - AluJb SINE Alu 0 312 1 1450 167 101 17 chr1 9489550 9489838 -233174515 - AluJb SINE Alu 0 312 1 3427 215 89 30 chr1 9489838 9490218 -233174135 - L1MC3 LINE L1 -896 6889 6408 924 251 8 4 chr1 9490222 9490461 -233173892 - L1MEc LINE L1 -5608 788 549 771 245 60 78 chr1 9490469 9490678 -233173675 - L1MEc LINE L1 -5984 412 201 1922 95 71 10 chr1 9490678 9490972 -233173381 - AluJb SINE Alu 0 312 1 771 245 60 78 chr1 9490972 9491072 -233173281 - L1MEc LINE L1 -6195 201 109 752 208 0 0 chr1 9491072 9491197 -233173156 - FLAM_A SINE Alu -8 125 1 771 245 60 78 chr1 9491197 9491270 -233173083 - L1MEc LINE L1 -6287 109 36 308 292 34 11 chr1 9491270 9491359 -233172994 - L2 LINE L2 -43 3270 3180 1995 125 10 7 chr1 9491415 9491710 -233172643 + AluSx SINE Alu 1 296 -16 260 125 21 0 chr1 9491710 9491758 -233172595 - Cheshire DNA MER1_type -29 2391 2343 * 1648 198 55 0 chr1 9491755 9492083 -233172270 - Cheshire DNA MER1_type -2074 346 1 2046 150 0 3 chr1 9492130 9492443 -233171910 + AluSx SINE Alu 1 312 0 256 381 121 0 chr1 9492443 9492616 -233171737 - L2 LINE L2 -136 3177 2984 205 281 207 0 chr1 9492652 9492734 -233171619 + L2 LINE L2 3133 3231 -41 327 283 29 9 chr1 9492866 9493003 -233171350 + MIR SINE MIR 11 146 -62 339 297 94 90 chr1 9493630 9493886 -233170467 + L2 LINE L2 3015 3271 -1 248 288 34 103 chr1 9493896 9494042 -233170311 - MIR3 SINE MIR -38 170 35 187 217 0 0 chr1 9494050 9494097 -233170256 + MIR SINE MIR 102 148 -60 1985 118 7 0 chr1 9494312 9494591 -233169762 - AluSx SINE Alu -16 296 16 249 340 64 39 chr1 9495591 9495794 -233168559 - L2 LINE L2 -113 3159 2952 274 278 0 10 chr1 9496342 9496439 -233167914 + (CACCAT)n Simple_repeat Simple_repeat 6 101 0 309 200 0 59 chr1 9496459 9496594 -233167759 + (CACCAT)n Simple_repeat Simple_repeat 1 127 0 362 240 0 7 chr1 9496622 9496768 -233167585 + (CCA)n Simple_repeat Simple_repeat 1 145 0 594 236 0 21 chr1 9496816 9497103 -233167250 + (CACCAT)n Simple_repeat Simple_repeat 1 281 0 608 240 7 10 chr1 9497154 9497452 -233166901 + (CACCAT)n Simple_repeat Simple_repeat 1 297 0 2382 101 93 21 chr1 9497496 9497761 -233166592 + MER83 LTR ERV1 1 308 -140 2039 122 54 35 chr1 9497761 9497832 -233166521 - THE1C LTR MaLR 0 375 307 2296 107 0 0 chr1 9497832 9498141 -233166212 + AluY SINE Alu 2 310 -1 2039 122 54 35 chr1 9498141 9498437 -233165916 - THE1C LTR MaLR -68 307 1 2382 101 93 21 chr1 9498437 9498589 -233165764 + MER83 LTR ERV1 308 448 0 306 246 0 26 chr1 9498592 9498706 -233165647 + (CAT)n Simple_repeat Simple_repeat 2 112 0 617 296 182 0 chr1 9498864 9499232 -233165121 + L2 LINE L2 2838 3272 0 201 141 16 31 chr1 9500938 9501002 -233163351 + CT-rich Low_complexity Low_complexity 1 63 0 335 261 0 18 chr1 9501027 9501138 -233163215 + CT-rich Low_complexity Low_complexity 1 109 0 283 285 227 8 chr1 9502041 9502283 -233162070 - L2 LINE L2 0 3313 3019 502 259 16 86 chr1 9502405 9502528 -233161825 - MIR SINE MIR -6 256 126 2257 117 0 0 chr1 9502528 9502835 -233161518 + AluSx SINE Alu 3 309 -3 1615 181 10 10 chr1 9502840 9503138 -233161215 + AluJb SINE Alu 1 298 -14 502 259 16 86 chr1 9503138 9503283 -233161070 - MIR SINE MIR -140 122 5 301 374 94 24 chr1 9504073 9504667 -233159686 - L2 LINE L2 -337 2977 2342 309 254 79 35 chr1 9504943 9505057 -233159296 + MIR3 SINE MIR 78 196 -12 469 272 7 22 chr1 9506029 9506165 -233158188 + MIR SINE MIR 84 217 -45 207 100 0 0 chr1 9506703 9506733 -233157620 + (TG)n Simple_repeat Simple_repeat 1 30 0 308 153 0 14 chr1 9507656 9507728 -233156625 + (TG)n Simple_repeat Simple_repeat 2 72 0 256 272 0 43 chr1 9507990 9508082 -233156271 + GA-rich Low_complexity Low_complexity 2 89 0 291 140 0 0 chr1 9508687 9508737 -233155616 + (TC)n Simple_repeat Simple_repeat 2 51 0 450 0 0 0 chr1 9509184 9509234 -233155119 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 226 83 0 62 chr1 9509311 9509359 -233154994 + (GGAGA)n Simple_repeat Simple_repeat 1 45 0 240 137 6 93 chr1 9509414 9509575 -233154778 + (GGAGA)n Simple_repeat Simple_repeat 1 147 0 201 238 16 0 chr1 9509710 9509773 -233154580 + C-rich Low_complexity Low_complexity 4 67 0 184 390 48 19 chr1 9510159 9510369 -233153984 + L2 LINE L2 3012 3227 -45 29 78 0 0 chr1 9510615 9510679 -233153674 + GC_rich Low_complexity Low_complexity 1 64 0 35 24 0 0 chr1 9510709 9510751 -233153602 + GC_rich Low_complexity Low_complexity 1 42 0 313 289 11 5 chr1 9511775 9511896 -233152457 - MIR SINE MIR -62 146 34 234 261 31 0 chr1 9512017 9512082 -233152271 - Charlie8 DNA MER1_type -3 2414 2348 321 288 76 8 chr1 9512207 9512325 -233152028 + MIR SINE MIR 46 171 -91 326 258 136 50 chr1 9512436 9512657 -233151696 - LTR16C LTR ERVL -59 432 193 252 250 53 40 chr1 9512989 9513065 -233151288 - L2 LINE L2 -188 3084 3008 262 333 40 32 chr1 9513387 9513513 -233150840 - MER5A DNA MER1_type -35 154 28 390 204 0 0 chr1 9514009 9514117 -233150236 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 388 300 36 29 chr1 9514117 9514257 -233150096 - L2 LINE L2 0 3313 3173 2181 91 0 3 chr1 9514643 9514953 -233149400 - AluY SINE Alu 0 309 1 2160 121 0 9 chr1 9514965 9515280 -233149073 - AluSx SINE Alu 0 312 1 313 320 146 15 chr1 9515418 9515624 -233148729 - L2 LINE L2 -205 3067 2835 729 258 57 39 chr1 9516053 9516287 -233148066 - MIR SINE MIR -17 245 11 626 273 12 0 chr1 9516975 9517140 -233147213 - MIR3 SINE MIR 0 208 42 2112 131 0 0 chr1 9517165 9517470 -233146883 + AluSx SINE Alu 1 305 -7 282 299 58 0 chr1 9517641 9517728 -233146625 + MIR SINE MIR 95 186 -76 180 213 0 43 chr1 9518002 9518049 -233146304 - MIR SINE MIR -69 139 95 192 288 62 12 chr1 9518143 9518223 -233146130 + MIR SINE MIR 19 102 -160 1204 128 35 35 chr1 9519011 9519205 -233145148 - AluJb SINE Alu 0 316 120 2245 103 3 0 chr1 9519205 9519505 -233144848 + AluSp SINE Alu 1 301 -12 1204 128 35 35 chr1 9519505 9519541 -233144812 - AluJb SINE Alu -195 121 86 2534 184 37 29 chr1 9519560 9520050 -233144303 - L1MB5 LINE L1 0 6174 5681 2166 107 0 3 chr1 9520265 9520563 -233143790 - AluSx SINE Alu -15 297 1 191 274 44 80 chr1 9520717 9520830 -233143523 - MIR3 SINE MIR -2 206 98 268 259 49 12 chr1 9520919 9521000 -233143353 - MIR SINE MIR -75 187 104 457 328 79 11 chr1 9521253 9521442 -233142911 + MIR SINE MIR 50 251 -11 281 252 71 79 chr1 9522337 9522464 -233141889 - MIR SINE MIR -65 143 18 1591 167 10 33 chr1 9522481 9522781 -233141572 + AluJb SINE Alu 1 293 -19 2053 104 0 31 chr1 9522783 9523099 -233141254 + AluSg SINE Alu 1 307 0 264 228 76 13 chr1 9523165 9523244 -233141109 + MIR SINE MIR 2 85 -177 217 354 13 13 chr1 9523506 9523585 -233140768 + L2 LINE L2 3142 3220 -52 1273 227 181 83 chr1 9523633 9523892 -233140461 + L2 LINE L2 1901 2133 -1181 2074 138 0 0 chr1 9523892 9524188 -233140165 - AluJb SINE Alu -16 296 1 1273 227 181 83 chr1 9524188 9524221 -233140132 + L2 LINE L2 2133 2161 -1153 1170 226 78 10 chr1 9524221 9524517 -233139836 - MER33 DNA MER1_type -4 320 5 1273 227 181 83 chr1 9524517 9524740 -233139613 + L2 LINE L2 2161 2361 -953 1999 128 0 0 chr1 9524740 9525042 -233139311 + AluSq SINE Alu 1 302 0 1273 227 181 83 chr1 9525042 9525255 -233139098 + L2 LINE L2 2361 2552 -762 1459 162 23 53 chr1 9525255 9525557 -233138796 + AluSx SINE Alu 6 298 -14 1273 227 181 83 chr1 9525557 9525638 -233138715 + L2 LINE L2 2552 2793 -521 342 253 54 133 chr1 9525665 9525905 -233138448 + L2 LINE L2 2912 3189 -124 2226 110 0 0 chr1 9525905 9526213 -233138140 - AluSc SINE Alu 0 309 2 342 253 54 133 chr1 9526213 9526328 -233138025 + L2 LINE L2 3189 3312 -1 705 307 173 18 chr1 9526332 9526573 -233137780 - L1M4 LINE L1 -1195 4951 4749 1750 128 55 10 chr1 9526573 9526863 -233137490 - AluSq SINE Alu -10 303 1 1832 145 20 20 chr1 9526865 9527038 -233137315 - AluJo SINE Alu -8 304 129 198 0 0 0 chr1 9527038 9527060 -233137293 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1832 145 20 20 chr1 9527060 9527190 -233137163 - AluJo SINE Alu -182 130 1 705 307 173 18 chr1 9527190 9527339 -233137014 - L1M4 LINE L1 -1397 4749 4497 788 223 83 0 chr1 9527399 9527556 -233136797 - FAM SINE Alu -5 170 1 21 71 0 0 chr1 9527566 9527608 -233136745 + AT_rich Low_complexity Low_complexity 1 42 0 734 313 40 48 chr1 9527789 9528050 -233136303 + L1ME4a LINE L1 5320 5582 -539 2205 119 3 0 chr1 9528050 9528361 -233135992 - AluSx SINE Alu 0 312 1 1956 158 7 0 chr1 9528364 9528667 -233135686 - AluJb SINE Alu -7 305 1 734 313 40 48 chr1 9528667 9529020 -233135333 + L1ME4a LINE L1 5584 5933 -188 2411 77 0 10 chr1 9529027 9529340 -233135013 + AluY SINE Alu 2 311 0 3681 183 21 37 chr1 9529341 9529714 -233134639 + L1MB8 LINE L1 5296 5673 -505 2176 120 3 0 chr1 9529714 9530015 -233134338 + AluSx SINE Alu 1 302 -10 3681 183 21 37 chr1 9530015 9530465 -233133888 + L1MB8 LINE L1 5673 6106 -72 1922 164 0 0 chr1 9530465 9530758 -233133595 - AluJo SINE Alu -19 293 1 3681 183 21 37 chr1 9530758 9530830 -233133523 + L1MB8 LINE L1 6106 6178 0 1153 137 41 65 chr1 9530945 9531133 -233133220 + MER96B DNA MER1_type? 131 313 -104 1570 111 93 52 chr1 9531133 9531275 -233133078 + AluJb SINE Alu 1 136 -174 2222 101 3 3 chr1 9531275 9531581 -233132772 + AluSx SINE Alu 1 306 -6 1570 111 93 52 chr1 9531581 9531737 -233132616 + AluJb SINE Alu 136 310 0 1153 137 41 65 chr1 9531737 9531838 -233132515 + MER96B DNA MER1_type? 313 415 -2 30 117 0 0 chr1 9532083 9532246 -233132107 + GC_rich Low_complexity Low_complexity 1 163 0 26 50 0 0 chr1 9532423 9532463 -233131890 + GC_rich Low_complexity Low_complexity 1 40 0 195 370 63 16 chr1 9532527 9532716 -233131637 + L2 LINE L2 2869 3066 -247 382 237 53 9 chr1 9532870 9532984 -233131369 + MIR SINE MIR 19 137 -125 522 266 345 8 chr1 9533238 9533829 -233130524 + L2 LINE L2 1527 2316 -998 226 235 12 129 chr1 9534484 9534569 -233129784 - MER91A DNA MER1_type -65 75 1 923 272 60 23 chr1 9534581 9534934 -233129419 - MLT1I LTR MaLR 0 409 44 1571 231 119 39 chr1 9534955 9535092 -233129261 + L2 LINE L2 2315 2440 -873 2074 96 13 42 chr1 9535092 9535405 -233128948 + AluSq SINE Alu 1 304 -9 1571 231 119 39 chr1 9535405 9536021 -233128332 + L2 LINE L2 2440 3124 -189 325 367 92 15 chr1 9536028 9536363 -233127990 - L1M4c LINE L1 -5077 1307 947 270 0 0 0 chr1 9536363 9536393 -233127960 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 2085 147 0 3 chr1 9536411 9536723 -233127630 - AluSx SINE Alu -1 311 1 248 269 82 45 chr1 9536744 9536878 -233127475 + L2 LINE L2 3113 3251 -62 959 233 75 0 chr1 9536901 9537039 -233127314 + MIR SINE MIR 5 131 -131 2172 114 0 0 chr1 9537039 9537336 -233127017 + AluSx SINE Alu 1 297 -15 959 233 75 0 chr1 9537336 9537437 -233126916 + MIR SINE MIR 131 262 0 452 254 17 76 chr1 9537446 9537549 -233126804 + L1ME4a LINE L1 5616 5724 -397 2238 97 3 16 chr1 9537549 9537886 -233126467 - AluSp SINE Alu 0 313 1 452 254 17 76 chr1 9537886 9538018 -233126335 + L1ME4a LINE L1 5724 5837 -284 1950 142 0 19 chr1 9538018 9538328 -233126025 - AluJb SINE Alu 0 312 9 382 341 26 70 chr1 9538418 9538688 -233125665 + L1ME4a LINE L1 5861 6118 -3 2337 99 3 0 chr1 9538825 9539137 -233125216 + AluSq SINE Alu 1 313 0 2159 129 0 0 chr1 9539408 9539753 -233124600 - AluSx SINE Alu 0 345 1 587 191 0 0 chr1 9539896 9540006 -233124347 - MER21B LTR ERV1 -423 440 331 261 75 0 0 chr1 9541436 9541476 -233122877 + (TG)n Simple_repeat Simple_repeat 2 41 0 1991 130 10 3 chr1 9542709 9543008 -233121345 + AluSx SINE Alu 1 301 -11 330 87 0 0 chr1 9543008 9543054 -233121299 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 237 203 0 12 chr1 9543075 9543136 -233121217 - MIR SINE MIR -62 146 107 186 43 0 0 chr1 9543191 9543214 -233121139 + (GGA)n Simple_repeat Simple_repeat 1 23 0 375 296 79 37 chr1 9543293 9543482 -233120871 + MIR SINE MIR 20 216 -46 229 319 0 29 chr1 9545565 9545634 -233118719 - MIR SINE MIR -79 183 117 196 245 41 0 chr1 9546394 9546443 -233117910 - MIR SINE MIR -95 167 117 2205 132 0 0 chr1 9546518 9546829 -233117524 - AluSx SINE Alu -1 311 1 318 265 48 0 chr1 9546837 9546920 -233117433 + L2 LINE L2 3227 3313 0 589 303 39 6 chr1 9547894 9548072 -233116281 + MIR SINE MIR 21 204 -58 22 0 0 0 chr1 9548778 9548800 -233115553 + GC_rich Low_complexity Low_complexity 1 22 0 291 402 21 5 chr1 9551555 9551701 -233112652 - MIR SINE MIR -62 146 16 511 314 76 83 chr1 9551756 9552398 -233111955 + L2 LINE L2 2623 3264 -49 2114 101 34 0 chr1 9552432 9552729 -233111624 + AluSx SINE Alu 1 307 -5 575 253 20 13 chr1 9553177 9553327 -233111026 + MIR SINE MIR 35 185 -77 412 285 134 17 chr1 9554257 9554429 -233109924 + MIR SINE MIR 1 192 -70 330 204 0 0 chr1 9554542 9554635 -233109718 + (CA)n Simple_repeat Simple_repeat 1 93 0 341 315 9 9 chr1 9555330 9555438 -233108915 + MIR SINE MIR 47 154 -108 2290 109 3 0 chr1 9555490 9555792 -233108561 + AluSx SINE Alu 1 303 -9 314 357 14 14 chr1 9555927 9556067 -233108286 - MIR SINE MIR -77 185 46 245 286 71 14 chr1 9556306 9556376 -233107977 - MIR3 SINE MIR -23 185 112 355 281 91 78 chr1 9556602 9556933 -233107420 - L2 LINE L2 -96 3176 2842 1877 228 71 43 chr1 9556945 9557524 -233106829 - MLT1G1 LTR MaLR 0 595 1 385 275 109 0 chr1 9558295 9558433 -233105920 + L2 LINE L2 3119 3271 -1 2389 74 0 0 chr1 9558461 9558782 -233105571 + AluY SINE Alu 1 321 0 289 238 79 0 chr1 9558784 9558847 -233105506 + L2 LINE L2 3200 3267 -5 279 259 49 25 chr1 9558868 9558949 -233105404 + L2 LINE L2 3188 3270 -2 324 128 0 0 chr1 9560199 9560246 -233104107 + L2 LINE L2 3264 3310 -3 421 292 39 0 chr1 9560405 9560535 -233103818 + MIR SINE MIR 99 233 -29 1921 181 7 0 chr1 9560763 9561073 -233103280 + AluJb SINE Alu 1 312 0 300 348 84 0 chr1 9561077 9561232 -233103121 + HAL1 LINE L1 1140 1307 -1200 217 301 12 12 chr1 9561321 9561404 -233102949 - MIR SINE MIR -97 165 83 617 259 5 49 chr1 9561499 9561704 -233102649 - MIR SINE MIR -17 245 50 284 212 254 8 chr1 9561788 9561906 -233102447 - MER5B DNA MER1_type -4 174 28 503 200 150 50 chr1 9561963 9562123 -233102230 - MER5A DNA MER1_type -7 182 7 393 255 11 0 chr1 9562137 9562231 -233102122 - MER5B DNA MER1_type 0 178 84 515 207 39 67 chr1 9562246 9562361 -233101992 + MER5B DNA MER1_type 3 113 -65 2553 60 0 3 chr1 9562361 9562662 -233101691 - AluY SINE Alu -11 300 1 515 207 39 67 chr1 9562662 9562725 -233101628 + MER5B DNA MER1_type 113 176 -2 1818 115 31 15 chr1 9562841 9563102 -233101251 - AluSq SINE Alu -7 306 42 2460 97 3 0 chr1 9563120 9563430 -233100923 - AluSq SINE Alu -2 311 1 681 292 69 15 chr1 9564047 9564411 -233099942 - L1MC4a LINE L1 -107 6014 5629 330 187 93 0 chr1 9564718 9564793 -233099560 - LTR67 LTR ERVL -5 552 471 2536 65 0 0 chr1 9564793 9565085 -233099268 + AluY SINE Alu 1 292 -19 1486 160 14 98 chr1 9565167 9565537 -233098816 + L1ME LINE L1 5039 5439 -727 2480 96 0 3 chr1 9565537 9565851 -233098502 + AluSp SINE Alu 1 313 0 1486 160 14 98 chr1 9565851 9565948 -233098405 + L1ME LINE L1 5439 5457 -709 2242 105 3 17 chr1 9565948 9566243 -233098110 + AluSx SINE Alu 1 291 -21 1486 160 14 98 chr1 9566243 9566386 -233097967 + L1ME LINE L1 5457 5610 -556 * 3244 157 30 30 chr1 9566380 9566870 -233097483 - L1MB5 LINE L1 -247 5927 5435 1833 162 17 10 chr1 9566870 9567167 -233097186 - AluJb SINE Alu -13 299 1 3244 157 30 30 chr1 9567167 9567346 -233097007 - L1MB5 LINE L1 -738 5436 5258 1873 143 14 27 chr1 9567357 9567650 -233096703 - AluJo SINE Alu -12 300 12 1961 201 85 20 chr1 9567659 9567771 -233096582 - L1MB5 LINE L1 -1322 4824 4721 2320 129 8 18 chr1 9567771 9568165 -233096188 + MLT1B LTR MaLR 1 390 0 1961 201 85 20 chr1 9568165 9568559 -233095794 - L1MB5 LINE L1 -1425 4721 4285 775 170 133 32 chr1 9568559 9568603 -233095750 + MER63 DNA MER1_type 102 140 -921 2118 139 7 0 chr1 9568603 9568898 -233095455 + AluSx SINE Alu 1 297 -15 775 170 133 32 chr1 9568898 9569041 -233095312 + MER63 DNA MER1_type 140 308 -753 1988 135 25 0 chr1 9569057 9569339 -233095014 + AluJb SINE Alu 1 289 -23 2056 92 0 0 chr1 9569359 9569608 -233094745 + AluSg SINE Alu 1 249 -61 216 0 0 0 chr1 9569608 9569632 -233094721 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 650 261 153 5 chr1 9569709 9569931 -233094422 + MER110A LTR ERV1 56 310 -158 372 121 0 0 chr1 9569939 9569997 -233094356 - AluSq SINE Alu -1 299 242 1527 73 0 11 chr1 9570000 9570191 -233094162 - AluSq SINE Alu -124 189 1 687 228 37 7 chr1 9570191 9570401 -233093952 + MER110A LTR ERV1 272 491 0 * 2282 181 12 2 chr1 9570401 9570814 -233093539 + MER63 DNA MER1_type 433 849 -212 649 195 0 9 chr1 9570816 9570929 -233093424 + FLAM_C SINE Alu 6 117 -26 360 0 0 0 chr1 9570932 9570972 -233093381 + (TAA)n Simple_repeat Simple_repeat 2 41 0 911 176 25 42 chr1 9570976 9571051 -233093302 + MER63 DNA MER1_type 827 902 -158 1986 166 7 0 chr1 9571051 9571359 -233092994 - AluJb SINE Alu -2 310 1 911 176 25 42 chr1 9571359 9571402 -233092951 + MER63 DNA MER1_type 902 944 -116 2560 43 0 20 chr1 9571402 9571701 -233092652 - AluY SINE Alu -18 293 1 911 176 25 42 chr1 9571701 9571819 -233092534 + MER63 DNA MER1_type 944 1060 0 465 264 88 7 chr1 9571819 9571967 -233092386 + L1ME1 LINE L1 5999 6158 -8 236 324 20 29 chr1 9572076 9572178 -233092175 - LTR67 LTR ERVL -193 364 264 274 224 0 47 chr1 9572207 9572292 -233092061 - MLT1J LTR MaLR -321 190 110 * 655 281 0 18 chr1 9572234 9572405 -233091948 - LTR67 LTR ERVL -386 171 4 185 296 56 0 chr1 9572692 9572746 -233091607 - L2 LINE L2 -214 3058 3002 2143 133 0 0 chr1 9572755 9573048 -233091305 + AluSx SINE Alu 1 293 -19 2389 84 3 16 chr1 9573059 9573368 -233090985 + AluSq SINE Alu 1 305 -8 2352 79 3 0 chr1 9573368 9573659 -233090694 + AluY SINE Alu 1 292 -19 1695 175 3 43 chr1 9573848 9573973 -233090380 + AluJo SINE Alu 1 129 -183 2250 101 0 17 chr1 9573973 9574270 -233090083 - AluSg SINE Alu -18 292 1 1695 175 3 43 chr1 9574270 9574447 -233089906 + AluJo SINE Alu 129 291 -21 1579 156 13 80 chr1 9574467 9574608 -233089745 + L1MB3 LINE L1 5820 5969 -214 2315 133 37 42 chr1 9574608 9574799 -233089554 + MSTB LTR MaLR 1 191 -235 2136 120 7 0 chr1 9574799 9575098 -233089255 + AluSx SINE Alu 1 301 -11 2162 134 0 0 chr1 9575106 9575411 -233088942 + AluSx SINE Alu 1 305 -7 2315 133 37 42 chr1 9575411 9575638 -233088715 + MSTB LTR MaLR 198 426 0 1579 156 13 80 chr1 9575638 9575836 -233088517 + L1MB3 LINE L1 5969 6132 -51 761 156 31 0 chr1 9575836 9575964 -233088389 + FLAM_C SINE Alu 2 133 0 1579 156 13 80 chr1 9575964 9576013 -233088340 + L1MB3 LINE L1 6132 6183 0 195 47 23 47 chr1 9576027 9576055 -233088298 + (TA)n Simple_repeat Simple_repeat 2 29 -14 2419 65 3 0 chr1 9576055 9576347 -233088006 - AluY SINE Alu -18 293 1 2336 100 0 13 chr1 9576349 9576648 -233087705 - AluSx SINE Alu -17 295 1 195 47 23 47 chr1 9576648 9576659 -233087694 + (TA)n Simple_repeat Simple_repeat 30 43 0 315 71 0 0 chr1 9576665 9576707 -233087646 + (CA)n Simple_repeat Simple_repeat 2 43 0 1315 65 130 0 chr1 9576726 9576926 -233087427 - MER30 DNA MER1_type 0 230 5 340 246 0 116 chr1 9577097 9577235 -233087118 + L1MCa LINE L1 1995 2116 -4310 205 266 115 35 chr1 9577384 9577409 -233086944 - L2 LINE L2 -154 3118 3096 1876 134 0 0 chr1 9577409 9577663 -233086690 + AluSx SINE Alu 1 254 -58 205 266 115 35 chr1 9577663 9577750 -233086603 - L2 LINE L2 -176 3096 2997 736 220 13 98 chr1 9579179 9579415 -233084938 - MIR SINE MIR 0 262 47 191 261 43 0 chr1 9579521 9579590 -233084763 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 9579596 9579649 -233084704 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 207 182 0 23 chr1 9579685 9579729 -233084624 + MIR SINE MIR 106 148 -114 2288 110 3 0 chr1 9579731 9580031 -233084322 + AluSx SINE Alu 2 302 -10 2320 88 7 3 chr1 9580079 9580374 -233083979 + AluSx SINE Alu 4 299 -13 1143 166 37 9 chr1 9580375 9580592 -233083761 + MLT1B LTR MaLR 166 388 -2 197 277 0 0 chr1 9580595 9580642 -233083711 + MIR3 SINE MIR 134 180 -28 244 234 0 0 chr1 9580761 9580808 -233083545 + AluSx SINE Alu 246 292 -9 2179 97 4 4 chr1 9580832 9581111 -233083242 + AluSx SINE Alu 21 299 -13 845 235 36 18 chr1 9581112 9581333 -233083020 - MLT1C LTR MaLR -58 409 185 416 143 0 0 chr1 9581335 9581405 -233082948 - AluSc SINE Alu -4 305 236 297 83 7 13 chr1 9581406 9581470 -233082883 - AluSp SINE Alu -133 170 112 * 640 180 29 7 chr1 9581445 9581584 -233082769 - MLT1C LTR MaLR -280 187 46 1266 166 0 0 chr1 9581585 9581772 -233082581 - AluJb SINE Alu -14 298 112 2125 134 0 0 chr1 9581794 9582086 -233082267 + AluSx SINE Alu 8 299 -13 450 167 0 0 chr1 9582667 9582739 -233081614 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2820 228 46 4 chr1 9582761 9583521 -233080832 + L1M4 LINE L1 3802 4593 -1553 2589 64 0 6 chr1 9583521 9583834 -233080519 - AluSq SINE Alu -2 311 1 265 304 34 38 chr1 9584049 9584207 -233080146 - MIR SINE MIR -62 146 3 367 305 8 16 chr1 9584746 9584874 -233079479 - MIR SINE MIR -45 217 91 209 345 0 46 chr1 9584865 9584952 -233079401 + L2 LINE L2 3189 3271 -1 * 421 346 33 33 chr1 9584995 9585238 -233079115 - MIR SINE MIR -15 247 5 699 261 87 9 chr1 9586022 9586252 -233078101 + MIR SINE MIR 11 258 -4 452 264 19 0 chr1 9586333 9586439 -233077914 - MER81 DNA DNA -1 113 6 209 313 108 0 chr1 9587028 9587111 -233077242 - MIR SINE MIR -60 202 111 1427 189 32 6 chr1 9587874 9588187 -233076166 + L1MB5 LINE L1 5848 6168 -6 2607 167 61 6 chr1 9588191 9588730 -233075623 + L1MB8 LINE L1 5550 6118 -60 200 348 43 17 chr1 9589169 9589284 -233075069 - L2 LINE L2 -509 2805 2688 1896 125 21 3 chr1 9589284 9589619 -233074734 + L1MA5 LINE L1 5960 6300 0 200 83 0 28 chr1 9589716 9589752 -233074601 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 190 368 85 0 chr1 9589818 9589924 -233074429 - L2 LINE L2 -665 2649 2535 216 0 0 0 chr1 9590452 9590476 -233073877 + (CA)n Simple_repeat Simple_repeat 1 24 0 943 247 18 5 chr1 9590503 9590722 -233073631 + MIR SINE MIR 2 223 -39 2207 113 0 0 chr1 9592446 9592764 -233071589 - AluSx SINE Alu 0 318 1 209 148 0 19 chr1 9592906 9592960 -233071393 + (CTTG)n Simple_repeat Simple_repeat 2 54 0 886 123 11 22 chr1 9592980 9593159 -233071194 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 348 204 9 19 chr1 9593167 9593275 -233071078 + CT-rich Low_complexity Low_complexity 3 109 0 215 266 126 0 chr1 9593840 9593931 -233070422 - MIR3 SINE MIR -54 154 90 469 227 91 8 chr1 9594508 9594640 -233069713 - MIR SINE MIR -37 225 83 437 262 28 0 chr1 9595055 9595209 -233069144 - MIR SINE MIR -65 143 28 192 214 0 0 chr1 9595581 9595637 -233068716 + (CA)n Simple_repeat Simple_repeat 2 57 0 365 240 0 0 chr1 9597666 9597741 -233066612 - MIR SINE MIR -121 141 67 771 256 76 5 chr1 9597893 9598104 -233066249 + MIR SINE MIR 26 251 -11 407 355 161 10 chr1 9598970 9599485 -233064868 - L2 LINE L2 -646 2668 2076 611 209 7 22 chr1 9599487 9599626 -233064727 - FRAM SINE Alu -12 164 28 13746 96 31 4 chr1 9599726 9601879 -233062474 - L1P LINE L1 -1588 4558 2348 229 113 0 38 chr1 10002174 10002227 -232662126 + (GGGGA)n Simple_repeat Simple_repeat 5 55 0 342 360 0 0 chr1 10002234 10002398 -232661955 + G-rich Low_complexity Low_complexity 1 164 0 1705 151 10 21 chr1 10003053 10003344 -232661009 - AluJo SINE Alu -22 290 3 24 85 0 0 chr1 10003910 10003969 -232660384 + GC_rich Low_complexity Low_complexity 1 59 0 1298 92 11 5 chr1 10007698 10007883 -232656470 - AluSp SINE Alu -127 186 1 2029 135 6 3 chr1 10007965 10008269 -232656084 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr1 10008269 10008296 -232656057 + (CAATG)n Simple_repeat Simple_repeat 2 28 0 2296 73 7 3 chr1 10009005 10009307 -232655046 - AluY SINE Alu -8 303 1 607 111 0 0 chr1 10009339 10009438 -232654915 + HERVI LTR ERV1 1611 1709 -5187 2213 92 3 3 chr1 10009438 10009743 -232654610 + AluSx SINE Alu 1 305 -7 2307 86 20 0 chr1 10009743 10010046 -232654307 + AluY SINE Alu 1 309 -2 1922 125 4 0 chr1 10010080 10010397 -232653956 + AluSx SINE Alu 9 326 0 270 235 99 0 chr1 10010467 10010548 -232653805 + HERVI LTR ERV1 4187 4275 -3510 1358 140 14 19 chr1 10010560 10010696 -232653657 + AluSq SINE Alu 1 137 -176 2541 43 0 3 chr1 10010696 10010999 -232653354 + AluY SINE Alu 1 302 -9 1358 140 14 19 chr1 10010999 10011076 -232653277 + AluSq SINE Alu 137 213 -100 205 284 40 47 chr1 10011890 10012038 -232652315 + (CACG)n Simple_repeat Simple_repeat 4 150 0 222 235 10 110 chr1 10012207 10012462 -232651891 + (CACG)n Simple_repeat Simple_repeat 1 229 0 206 296 0 0 chr1 10012931 10012985 -232651368 + MIR SINE MIR 111 164 -98 209 60 40 40 chr1 10017287 10017337 -232647016 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 1330 192 19 11 chr1 10017976 10018237 -232646116 - AluSx SINE Alu -49 263 1 3541 155 29 0 chr1 10018885 10019471 -232644882 - LTR26 LTR ERV1 0 603 1 305 292 133 0 chr1 10020902 10021015 -232643338 - L1MC4 LINE L1 -1332 6710 6583 6708 70 9 0 chr1 10021564 10022846 -232641507 - L1PA7 LINE L1 0 6154 4855 6812 93 2 3 chr1 10022847 10023922 -232640431 + L1PA7 LINE L1 3773 4846 -1300 12071 148 17 9 chr1 10024471 10027300 -232637053 - L1PA13 LINE L1 -2 6161 3320 220 307 132 9 chr1 10029037 10029151 -232635202 + L2 LINE L2 3180 3307 -6 798 313 50 22 chr1 10029777 10030413 -232633940 + L1M4 LINE L1 4544 5197 -949 1891 172 35 58 chr1 10030916 10031312 -232633041 + MLT1B LTR MaLR 4 390 0 304 291 86 26 chr1 10032161 10032278 -232632075 - L2 LINE L2 -1 3312 3189 220 161 43 86 chr1 10032547 10032640 -232631713 + (CTGGGG)n Simple_repeat Simple_repeat 1 89 0 1068 206 127 24 chr1 10033199 10033493 -232630860 - MER54A LTR ERVL -6 895 554 1857 128 10 14 chr1 10033493 10033783 -232630570 + AluSq SINE Alu 3 291 -22 1068 206 127 24 chr1 10033783 10033857 -232630496 - MER54A LTR ERVL -347 554 489 255 286 0 0 chr1 10036827 10037005 -232627348 + (CA)n Simple_repeat Simple_repeat 1 178 0 491 283 6 6 chr1 10037018 10037195 -232627158 + (CA)n Simple_repeat Simple_repeat 2 178 0 263 294 78 10 chr1 10037254 10037356 -232626997 - L2 LINE L2 -6 3266 3158 2253 102 0 3 chr1 10038461 10038764 -232625589 + AluSx SINE Alu 1 302 -10 2253 97 0 3 chr1 10038765 10039063 -232625290 + AluSc SINE Alu 1 297 -12 1380 133 0 0 chr1 10039066 10039262 -232625091 + AluSg/x SINE Alu 100 295 -15 650 159 68 38 chr1 10039263 10039395 -232624958 - AluJo/FRAM SINE Alu -32 280 145 1905 112 16 20 chr1 10039396 10039566 -232624787 - AluSq SINE Alu -8 305 136 2303 83 0 10 chr1 10039566 10039868 -232624485 - AluY SINE Alu -12 299 1 2346 91 0 0 chr1 10039868 10040163 -232624190 - AluSg SINE Alu -13 297 2 1905 112 16 20 chr1 10040163 10040294 -232624059 - AluSq SINE Alu -175 138 4 285 204 57 45 chr1 10040589 10040600 -232623753 + AluJb SINE Alu 125 134 -168 1628 152 13 44 chr1 10040600 10040732 -232623621 + AluJo SINE Alu 1 136 -176 1988 128 0 3 chr1 10040732 10041014 -232623339 + AluSx SINE Alu 14 294 -18 2145 105 16 3 chr1 10041014 10041318 -232623035 + AluSp SINE Alu 1 309 -4 2163 113 7 0 chr1 10041318 10041628 -232622725 + AluSp SINE Alu 1 312 -1 1628 152 13 44 chr1 10041628 10041808 -232622545 + AluJo SINE Alu 133 305 -7 285 204 57 45 chr1 10041808 10041884 -232622469 + AluJb SINE Alu 134 213 -89 469 262 33 31 chr1 10042066 10042472 -232621881 + (TGAG)n Simple_repeat Simple_repeat 1 407 0 222 279 58 41 chr1 10042562 10042734 -232621619 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 202 260 0 52 chr1 10045653 10045749 -232618604 + (CCCTG)n Simple_repeat Simple_repeat 5 95 0 366 226 0 52 chr1 10049777 10049892 -232614461 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 261 262 6 27 chr1 10052724 10052907 -232611446 + (CACG)n Simple_repeat Simple_repeat 1 179 0 319 274 4 25 chr1 10052912 10053191 -232611162 + (CA)n Simple_repeat Simple_repeat 1 272 0 410 328 11 11 chr1 10053247 10053424 -232610929 + (CA)n Simple_repeat Simple_repeat 1 177 0 363 333 11 11 chr1 10053451 10053625 -232610728 + (CA)n Simple_repeat Simple_repeat 2 175 0 190 324 14 0 chr1 10058015 10058089 -232606264 - MIR SINE MIR -132 130 56 189 0 0 0 chr1 10059135 10059156 -232605197 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 294 274 60 18 chr1 10060588 10060756 -232603597 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 * 342 292 6 11 chr1 10060749 10060927 -232603426 + (TG)n Simple_repeat Simple_repeat 1 177 0 * 417 246 35 23 chr1 10060829 10061000 -232603353 + (TGAG)n Simple_repeat Simple_repeat 2 174 0 255 261 85 24 chr1 10061021 10061186 -232603167 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 2274 90 0 0 chr1 10061277 10061578 -232602775 - AluY SINE Alu -10 301 1 1303 172 13 89 chr1 10061578 10061881 -232602472 - AluJb SINE Alu -12 300 21 1663 149 57 4 chr1 10062038 10062319 -232602034 + AluJo SINE Alu 1 296 -16 2242 94 3 0 chr1 10062326 10062623 -232601730 + AluSx SINE Alu 1 298 -14 2162 88 10 7 chr1 10062730 10063025 -232601328 - AluY SINE Alu -15 296 1 1620 169 35 0 chr1 10063045 10063329 -232601024 - AluJo SINE Alu -15 297 4 2352 61 3 0 chr1 10063374 10063667 -232600686 - AluY SINE Alu -17 294 1 2113 112 7 0 chr1 10063845 10064140 -232600213 + AluSg SINE Alu 1 297 -13 414 142 142 19 chr1 10065198 10065304 -232599049 - MER20 DNA MER1_type -48 171 53 2021 121 7 0 chr1 10066284 10066573 -232597780 + AluSx SINE Alu 1 291 -21 186 200 147 21 chr1 10067011 10067106 -232597247 + L2 LINE L2 3133 3239 -33 2286 88 13 0 chr1 10069265 10069573 -232594780 + AluSx SINE Alu 1 312 0 240 265 0 15 chr1 10070888 10070912 -232593441 + AluJo SINE Alu 113 136 -166 1901 128 0 49 chr1 10070912 10071217 -232593136 + AluSx SINE Alu 1 290 -22 240 265 0 15 chr1 10071217 10071260 -232593093 + AluJo SINE Alu 136 179 -123 353 231 136 0 chr1 10071339 10071508 -232592845 + MER63 DNA MER1_type 825 1016 -45 1732 122 26 51 chr1 10071735 10072047 -232592306 - AluSx SINE Alu -7 305 2 915 76 0 0 chr1 10072048 10072166 -232592187 - AluSg/x SINE Alu -11 301 184 195 290 0 43 chr1 10072328 10072397 -232591956 + L2 LINE L2 2997 3062 -210 180 0 0 0 chr1 10072647 10072667 -232591686 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1627 111 43 0 chr1 10072681 10072915 -232591438 + AluSx SINE Alu 1 244 -68 312 61 41 0 chr1 10072990 10073039 -232591314 + AluJo SINE Alu 85 135 -167 1369 160 98 0 chr1 10073039 10073169 -232591184 + AluJo SINE Alu 1 117 -195 2493 41 3 22 chr1 10073169 10073485 -232590868 + AluY SINE Alu 1 310 -1 1369 160 98 0 chr1 10073485 10073598 -232590755 + AluJo SINE Alu 117 268 -44 2040 94 43 0 chr1 10073619 10073896 -232590457 + AluSx SINE Alu 1 289 -23 455 293 45 20 chr1 10077629 10077827 -232586526 + MER66B LTR ERV1 142 344 -142 1919 112 22 0 chr1 10077854 10078123 -232586230 + AluSx SINE Alu 1 275 -37 760 233 11 23 chr1 10078138 10078314 -232586039 + AluSq SINE Alu 137 310 -3 442 172 108 0 chr1 10078314 10078407 -232585946 + MER66B LTR ERV1 384 486 0 1400 84 0 0 chr1 10078441 10078620 -232585733 + AluY SINE Alu 1 179 -132 286 175 35 0 chr1 10078621 10078678 -232585675 + AluSp/q SINE Alu 240 298 -5 457 258 24 0 chr1 10078823 10078947 -232585406 - MER66-int LTR ERV1 -6337 339 213 2130 110 0 16 chr1 10079037 10079345 -232585008 - AluSc SINE Alu -6 303 1 930 124 0 28 chr1 10079346 10079491 -232584862 - FLAM_C SINE Alu -2 141 1 1024 189 32 57 chr1 10079491 10079912 -232584441 + MER66-int LTR ERV1 653 1114 -5562 2136 120 0 0 chr1 10079912 10080204 -232584149 - AluSc SINE Alu -17 292 1 279 67 0 22 chr1 10080204 10080249 -232584104 - Alu SINE Alu -258 44 1 * 339 62 15 15 chr1 10080249 10080293 -232584060 - Alu SINE Alu -264 44 1 344 47 16 16 chr1 10080293 10080337 -232584016 - AluS SINE Alu -259 44 1 299 78 16 16 chr1 10080337 10080381 -232583972 - AluS SINE Alu -259 44 1 292 79 16 16 chr1 10080381 10080425 -232583928 - Alu SINE Alu -264 44 1 1263 200 76 5 chr1 10080441 10080926 -232583427 + MER66-int LTR ERV1 1445 1999 -4677 2066 119 7 0 chr1 10083030 10083333 -232581020 + AluSc SINE Alu 1 305 -4 1144 144 0 0 chr1 10083400 10083581 -232580772 + AluSg/x SINE Alu 125 305 -7 2060 123 3 0 chr1 10083581 10083874 -232580479 + AluSp SINE Alu 1 294 -19 2272 76 10 0 chr1 10083878 10084167 -232580186 + AluY SINE Alu 1 292 -19 1439 178 14 51 chr1 10084338 10084465 -232579888 + AluJo SINE Alu 21 151 -161 2196 93 7 0 chr1 10084465 10084756 -232579597 + AluY SINE Alu 1 293 -18 1439 178 14 51 chr1 10084756 10084921 -232579432 + AluJo SINE Alu 151 302 -10 2141 105 7 0 chr1 10088632 10088928 -232575425 + AluSx SINE Alu 1 298 -14 2270 117 0 0 chr1 10089255 10089564 -232574789 + AluSx SINE Alu 1 309 -3 2044 116 0 23 chr1 10089564 10089874 -232574479 + AluSc SINE Alu 1 303 -6 2101 96 6 38 chr1 10090684 10090997 -232573356 + AluSx SINE Alu 1 303 -9 347 100 0 0 chr1 10090998 10091048 -232573305 + Alu SINE Alu 1 50 -258 2157 112 3 0 chr1 10091058 10091352 -232573001 - AluSx SINE Alu -16 296 2 2064 103 3 10 chr1 10091359 10091534 -232572819 - AluSq SINE Alu -4 309 135 2471 43 7 3 chr1 10091534 10091834 -232572519 - AluY SINE Alu -10 301 1 2064 103 3 10 chr1 10091834 10091949 -232572404 - AluSq SINE Alu -178 135 21 814 215 6 0 chr1 10092086 10092244 -232572109 - FRAM SINE Alu -16 160 2 609 196 43 43 chr1 10092249 10092367 -232571986 + MER20 DNA MER1_type 57 177 -42 1504 195 17 14 chr1 10092367 10092664 -232571689 + AluJo SINE Alu 1 298 -14 609 196 43 43 chr1 10092664 10092708 -232571645 + MER20 DNA MER1_type 176 219 0 278 238 24 12 chr1 10093639 10093723 -232570630 + (CTGGGG)n Simple_repeat Simple_repeat 6 90 0 189 0 0 0 chr1 10094071 10094092 -232570261 + (CCG)n Simple_repeat Simple_repeat 2 22 0 219 167 42 21 chr1 10095739 10095787 -232568566 + L3 LINE CR1 612 660 -917 918 98 15 8 chr1 10097490 10097622 -232566731 + AluSp SINE Alu 1 133 -180 2108 123 3 3 chr1 10097634 10097943 -232566410 + AluY SINE Alu 1 309 -2 2287 93 3 0 chr1 10098029 10098329 -232566024 - AluY SINE Alu -10 301 1 1551 167 20 30 chr1 10098633 10098932 -232565421 - AluSx SINE Alu -16 296 1 2395 69 0 3 chr1 10098935 10099241 -232565112 - AluY SINE Alu -6 305 1 1911 122 4 0 chr1 10099281 10099559 -232564794 - AluY SINE Alu -5 306 28 1899 121 46 0 chr1 10099781 10100062 -232564291 - AluSg SINE Alu -16 294 1 787 193 12 30 chr1 10100067 10100233 -232564120 - AluJo/FRAM SINE Alu -16 296 134 1633 182 19 0 chr1 10100233 10100540 -232563813 - 7SLRNA srpRNA srpRNA -7 313 1 298 211 53 0 chr1 10100782 10100858 -232563495 + AluJ/FRAM SINE Alu 223 302 0 1885 140 20 0 chr1 10100861 10101154 -232563199 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr1 10101839 10101862 -232562491 + GC_rich Low_complexity Low_complexity 1 23 0 26 82 0 0 chr1 10102363 10102424 -232561929 + GC_rich Low_complexity Low_complexity 1 61 0 340 210 0 0 chr1 10102505 10102586 -232561767 - AluSg SINE Alu 0 300 220 726 149 182 7 chr1 10102587 10102741 -232561612 - AluSg SINE Alu -124 186 6 1670 143 0 21 chr1 10102789 10103076 -232561277 + AluJb SINE Alu 15 295 -17 304 214 208 45 chr1 10103268 10103446 -232560907 - L1MC4 LINE L1 -64 7978 7772 1728 130 0 0 chr1 10103550 10103804 -232560549 - AluSx SINE Alu 0 312 59 851 85 15 31 chr1 10103821 10103951 -232560402 + AluSp/q SINE Alu 167 294 -19 1755 131 75 0 chr1 10103954 10104236 -232560117 + AluSx SINE Alu 1 303 -9 1256 153 157 0 chr1 10104240 10104476 -232559877 - AluJb SINE Alu -19 293 21 646 268 36 54 chr1 10104551 10104594 -232559759 - MER74B LTR ERVL -82 540 498 8041 57 2 0 chr1 10104594 10105561 -232558792 + LTR5 LTR ERVK 1 969 0 646 268 36 54 chr1 10105561 10105721 -232558632 - MER74B LTR ERVL -124 498 337 2204 101 0 3 chr1 10105721 10106019 -232558334 + AluSq SINE Alu 1 297 -16 2284 104 0 0 chr1 10106019 10106326 -232558027 + AluY SINE Alu 1 307 -4 646 268 36 54 chr1 10106326 10106456 -232557897 - MER74B LTR ERVL -283 339 211 225 289 87 59 chr1 10106639 10106955 -232557398 + L1M3e LINE L1 656 1544 -5486 3773 47 47 4 chr1 10107039 10107509 -232556844 - LTR2B LTR ERV1 0 490 1 21774 119 15 7 chr1 10107509 10111022 -232553331 - Harlequin LTR ERV1 -1 6895 3352 5770 61 44 11 chr1 10111021 10111558 -232552795 - Harlequin LTR ERV1 -4322 2574 1989 * 2640 27 0 0 chr1 10111558 10111859 -232552494 + AluY SINE Alu 1 301 -10 5770 61 44 11 chr1 10111859 10112292 -232552061 - Harlequin LTR ERV1 -4907 1989 1572 * 5980 85 20 6 chr1 10112278 10113165 -232551188 - Harlequin LTR ERV1 -5996 900 1 3928 32 42 11 chr1 10113165 10113640 -232550713 - LTR2B LTR ERV1 0 490 1 21 0 0 0 chr1 10115021 10115042 -232549311 + GC_rich Low_complexity Low_complexity 1 21 0 208 203 0 94 chr1 10115429 10115493 -232548860 + (CCCCG)n Simple_repeat Simple_repeat 1 58 0 272 248 76 19 chr1 10117169 10117274 -232547079 + L2 LINE L2 3102 3212 -101 372 234 80 7 chr1 10117301 10117438 -232546915 - REP3 LTR ERV -294 268 122 3119 152 56 2 chr1 10117560 10118153 -232546200 + MER41B LTR ERV1 4 628 -7 229 200 20 0 chr1 10118159 10118209 -232546144 + L2 LINE L2 3220 3270 -2 1864 143 20 3 chr1 10118266 10118560 -232545793 - AluSx SINE Alu -13 299 1 2014 119 3 22 chr1 10118563 10118875 -232545478 - AluSx SINE Alu -6 306 1 1051 96 0 0 chr1 10118875 10119010 -232545343 - AluSq/x SINE Alu -176 136 2 2260 112 0 6 chr1 10119227 10119539 -232544814 + AluSq SINE Alu 1 310 -3 1662 176 3 3 chr1 10119600 10119889 -232544464 + AluJb SINE Alu 2 290 -22 1995 100 10 20 chr1 10119968 10120267 -232544086 + AluSc SINE Alu 1 296 -13 320 291 0 39 chr1 10121787 10121969 -232542384 + C-rich Low_complexity Low_complexity 4 178 0 343 224 3 50 chr1 10121987 10122328 -232542025 + C-rich Low_complexity Low_complexity 1 325 0 202 205 26 39 chr1 10124466 10124544 -232539809 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr1 10127156 10127180 -232537173 + (CGAG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr1 10127289 10127312 -232537041 + GC_rich Low_complexity Low_complexity 1 23 0 215 170 38 0 chr1 10127373 10127426 -232536927 + (CGGG)n Simple_repeat Simple_repeat 1 55 0 28 61 0 0 chr1 10131179 10131228 -232533125 + GC_rich Low_complexity Low_complexity 1 49 0 2300 46 0 3 chr1 10134395 10134704 -232529649 - AluY SINE Alu 0 308 1 1945 113 25 0 chr1 10134858 10135133 -232529220 - AluSx SINE Alu -30 282 1 216 0 0 0 chr1 10135135 10135159 -232529194 + (T)n Simple_repeat Simple_repeat 1 24 0 1874 153 33 0 chr1 10135159 10135460 -232528893 - AluJb SINE Alu 0 312 2 674 197 16 8 chr1 10135464 10135591 -232528762 - FLAM_C SINE Alu -5 128 1 1206 163 80 73 chr1 10136804 10137104 -232527249 - AluJo SINE Alu -10 302 1 1949 119 27 7 chr1 10137180 10137474 -232526879 + AluSg SINE Alu 1 300 -10 1544 175 26 23 chr1 10137483 10137622 -232526731 + AluSx SINE Alu 1 138 -174 2130 104 3 3 chr1 10137622 10137919 -232526434 + AluSq SINE Alu 3 299 -14 1544 175 26 23 chr1 10137919 10138087 -232526266 + AluSx SINE Alu 138 309 -3 894 78 0 8 chr1 10138179 10138307 -232526046 - FLAM_C SINE Alu -16 127 1 484 95 0 40 chr1 10138309 10138383 -232525970 - Alu SINE Alu -19 292 222 1016 115 48 0 chr1 10138383 10138570 -232525783 - LTR10A LTR ERV1 0 609 366 2386 65 20 0 chr1 10138570 10138864 -232525489 - AluY SINE Alu -11 300 1 2120 115 3 3 chr1 10138864 10139168 -232525185 - AluSx SINE Alu -8 304 1 579 131 0 0 chr1 10139168 10139267 -232525086 - HERV17 LTR ERV1 -5187 1709 1611 * 1302 158 3 81 chr1 10139234 10139299 -232525054 - HERV17 LTR ERV1 -3313 4472 4404 2557 50 0 0 chr1 10139299 10139600 -232524753 + AluY SINE Alu 1 301 -10 1302 158 3 81 chr1 10139600 10139734 -232524619 - HERV17 LTR ERV1 -3381 4404 4303 1998 113 0 53 chr1 10139734 10140054 -232524299 - AluSx SINE Alu -9 303 1 1302 158 3 81 chr1 10140054 10140163 -232524190 - HERV17 LTR ERV1 -3482 4303 4187 1883 121 24 17 chr1 10140234 10140532 -232523821 - AluY SINE Alu -10 301 2 578 140 26 88 chr1 10140533 10140873 -232523480 - HERV17 LTR ERV1 -5760 1136 704 * 1380 186 69 9 chr1 10140860 10141194 -232523159 - HERV17 LTR ERV1 -4918 1731 1378 2329 58 17 0 chr1 10141509 10141803 -232522550 + AluY SINE Alu 2 300 -11 2160 82 21 7 chr1 10142506 10142797 -232521556 - AluY SINE Alu -16 295 1 2157 116 3 0 chr1 10142805 10143107 -232521246 - AluSx SINE Alu -9 303 1 1078 129 6 0 chr1 10144126 10144289 -232520064 + AluSc SINE Alu 146 309 0 302 271 68 0 chr1 10144289 10144407 -232519946 + HUERS-P1 LTR ERV1 2277 2402 -3861 1796 159 3 0 chr1 10144667 10144963 -232519390 - AluSx SINE Alu -15 297 1 940 134 0 0 chr1 10144963 10145097 -232519256 - AluSq/x SINE Alu -177 135 2 2059 125 0 3 chr1 10145105 10145402 -232518951 - AluSp SINE Alu -17 296 1 2475 65 0 7 chr1 10146395 10146705 -232517648 + AluY SINE Alu 1 308 -3 2455 64 0 6 chr1 10148774 10149085 -232515268 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 10149134 10149437 -232514916 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 10149439 10149742 -232514611 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 10149748 10150041 -232514312 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 10150041 10150182 -232514171 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 10150188 10150480 -232513873 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 10151531 10151842 -232512511 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 10152655 10152949 -232511404 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 10154944 10155000 -232509353 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 10155087 10155388 -232508965 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 10155396 10155686 -232508667 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 10155736 10155874 -232508479 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 10155916 10155951 -232508402 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 10155951 10156211 -232508142 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 10156211 10156345 -232508008 - L1M4 LINE L1 -1467 4679 4547 2138 102 0 10 chr1 10156345 10156650 -232507703 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 10156650 10156771 -232507582 - L1M4 LINE L1 -1599 4547 4428 2431 72 7 0 chr1 10156771 10157078 -232507275 + AluY SINE Alu 1 309 -2 2856 224 49 42 chr1 10157078 10157470 -232506883 - L1M4 LINE L1 -1718 4428 4040 1805 113 4 0 chr1 10157470 10157726 -232506627 + AluSp SINE Alu 49 305 -8 1968 92 58 20 chr1 10157727 10158019 -232506334 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 10158019 10158453 -232505900 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 10158454 10158519 -232505834 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 10158581 10158645 -232505708 - L1MC3 LINE L1 -225 7560 7496 1700 123 22 75 chr1 10160448 10160766 -232503587 + AluSq SINE Alu 1 301 -12 854 200 0 25 chr1 10160766 10160926 -232503427 + AluSg/x SINE Alu 138 293 -17 842 102 16 23 chr1 10161009 10161137 -232503216 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 10161139 10161230 -232503123 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 10161230 10161663 -232502690 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 10161663 10161874 -232502479 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 10161879 10161961 -232502392 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 10161980 10162320 -232502033 - LTR10A LTR ERV1 -62 547 119 1829 135 204 13 chr1 10162320 10162698 -232501655 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 10162698 10162837 -232501516 - LTR10A LTR ERV1 -490 119 1 25 35 0 52 chr1 10163388 10163446 -232500907 + GC_rich Low_complexity Low_complexity 1 55 0 189 68 68 0 chr1 10163559 10163603 -232500750 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 680 135 10 0 chr1 10164123 10164227 -232500126 - AluSq/x SINE Alu -208 105 1 1171 194 0 5 chr1 10165946 10166168 -232498185 - AluSg/x SINE Alu -7 305 85 1721 145 39 0 chr1 10166171 10166454 -232497899 - AluSx SINE Alu -18 294 1 2028 108 20 7 chr1 10167481 10167787 -232496566 - AluSq SINE Alu 0 313 4 1776 163 20 0 chr1 10167789 10168089 -232496264 - AluSx SINE Alu -6 306 1 318 339 6 27 chr1 10168999 10169182 -232495171 + (CACG)n Simple_repeat Simple_repeat 1 179 0 * 494 279 6 6 chr1 10169094 10169273 -232495080 + (CA)n Simple_repeat Simple_repeat 1 179 0 315 238 17 0 chr1 10169301 10169473 -232494880 + (CA)n Simple_repeat Simple_repeat 2 176 0 383 279 0 53 chr1 10169497 10169687 -232494666 + (CA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chr1 10169744 10169768 -232494585 + (CA)n Simple_repeat Simple_repeat 2 25 0 2057 114 0 10 chr1 10170308 10170605 -232493748 - AluSg SINE Alu -16 294 1 1170 144 35 5 chr1 10171886 10172088 -232492265 + AluJb SINE Alu 85 292 -20 2148 76 7 26 chr1 10172100 10172404 -232491949 + AluY SINE Alu 12 309 -2 1827 118 3 88 chr1 10172777 10173106 -232491247 - AluSx SINE Alu -11 301 1 2058 138 0 3 chr1 10173113 10173418 -232490935 - AluSp SINE Alu -9 304 1 2416 67 0 0 chr1 10176491 10176791 -232487562 - AluY SINE Alu -11 300 1 1470 195 21 7 chr1 10176803 10177085 -232487268 - AluJb SINE Alu -26 286 1 1948 143 13 0 chr1 10177089 10177396 -232486957 - AluSx SINE Alu -1 311 1 2157 124 0 10 chr1 10179032 10179339 -232485014 - AluSq SINE Alu -8 305 2 270 196 18 0 chr1 10181187 10181243 -232483110 - MLT1I LTR MaLR 0 409 353 1568 191 20 10 chr1 10181330 10181624 -232482729 + AluJb SINE Alu 1 297 -15 2805 3 0 0 chr1 10181625 10181933 -232482420 + AluYa5 SINE Alu 1 308 -3 1646 164 3 24 chr1 10181950 10182242 -232482111 + AluSx SINE Alu 4 289 -23 2148 112 7 0 chr1 10182250 10182555 -232481798 + AluSc SINE Alu 1 307 -2 2334 80 0 16 chr1 10182569 10182883 -232481470 + AluY SINE Alu 1 309 -2 2360 80 0 6 chr1 10184623 10184934 -232479419 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 10184983 10185286 -232479067 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 10185288 10185591 -232478762 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 10185597 10185890 -232478463 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 10185890 10186031 -232478322 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 10186037 10186329 -232478024 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 10187380 10187691 -232476662 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 10188504 10188798 -232475555 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 10190793 10190849 -232473504 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 10190936 10191237 -232473116 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 10191245 10191535 -232472818 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 10191585 10191723 -232472630 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 10191765 10191800 -232472553 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 10191800 10192060 -232472293 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 10192060 10192194 -232472159 - L1M4 LINE L1 -1467 4679 4547 2152 98 0 10 chr1 10192194 10192499 -232471854 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 10192499 10192620 -232471733 - L1M4 LINE L1 -1599 4547 4428 2385 69 10 0 chr1 10192620 10192924 -232471429 + AluY SINE Alu 1 307 -4 2856 224 49 42 chr1 10192924 10193316 -232471037 - L1M4 LINE L1 -1718 4428 4040 1812 113 4 0 chr1 10193316 10193573 -232470780 + AluSp SINE Alu 49 306 -7 1968 92 58 20 chr1 10193574 10193866 -232470487 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 10193866 10194300 -232470053 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 10194301 10194366 -232469987 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 10194428 10194492 -232469861 - L1MC3 LINE L1 -225 7560 7496 1759 123 23 52 chr1 10196296 10196606 -232467747 + AluSq SINE Alu 1 301 -12 811 194 0 25 chr1 10196606 10196766 -232467587 + AluSg/x SINE Alu 140 295 -17 842 102 16 23 chr1 10196849 10196977 -232467376 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 10196979 10197070 -232467283 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 10197070 10197503 -232466850 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 10197503 10197714 -232466639 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 10197719 10197801 -232466552 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 10197820 10198160 -232466193 - LTR10A LTR ERV1 -62 547 119 1808 133 207 13 chr1 10198160 10198537 -232465816 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 10198537 10198676 -232465677 - LTR10A LTR ERV1 -490 119 1 24 47 0 47 chr1 10199225 10199289 -232465064 + GC_rich Low_complexity Low_complexity 1 61 0 208 111 67 0 chr1 10199359 10199429 -232464924 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 1844 106 41 10 chr1 10200114 10200406 -232463947 - AluSg SINE Alu -7 303 3 1865 50 50 0 chr1 10200416 10200656 -232463697 - AluY SINE Alu 0 311 60 1108 39 0 0 chr1 10200656 10200783 -232463570 - AluY SINE Alu -176 135 9 1830 152 0 0 chr1 10200791 10201081 -232463272 - AluSc SINE Alu -19 290 1 516 231 0 0 chr1 10201344 10201452 -232462901 - FLAM_A SINE Alu -15 127 20 2324 72 13 0 chr1 10201469 10201776 -232462577 - AluY SINE Alu 0 311 1 1925 130 3 7 chr1 10201787 10202087 -232462266 - AluSx SINE Alu -13 299 1 2173 86 7 0 chr1 10203803 10204095 -232460258 - AluY SINE Alu -17 294 1 1346 149 0 0 chr1 10204102 10204310 -232460043 - AluSg/x SINE Alu -20 292 85 935 167 61 5 chr1 10204313 10204511 -232459842 - AluSg/x SINE Alu -17 295 87 2077 79 18 0 chr1 10204965 10205301 -232459052 - AluSp SINE Alu 0 341 1 994 70 8 0 chr1 10205305 10205434 -232458919 - AluSp SINE Alu -183 130 1 1834 144 17 0 chr1 10205436 10205727 -232458626 - AluSx SINE Alu -16 296 1 435 309 8 6 chr1 10206682 10207104 -232457249 + (CA)n Simple_repeat Simple_repeat 1 422 0 283 300 10 3 chr1 10207135 10207455 -232456898 + (CA)n Simple_repeat Simple_repeat 1 322 0 325 314 5 32 chr1 10207476 10207661 -232456692 + (CA)n Simple_repeat Simple_repeat 1 180 0 2035 118 0 10 chr1 10208605 10208902 -232455451 - AluSg SINE Alu -16 294 1 1201 171 15 0 chr1 10210233 10210438 -232453915 + AluJb SINE Alu 85 292 -20 1428 134 36 82 chr1 10210439 10210745 -232453608 + AluSc SINE Alu 1 292 -17 1057 165 0 0 chr1 10210745 10210915 -232453438 + AluSp SINE Alu 134 303 -10 1747 122 3 91 chr1 10210917 10211237 -232453116 + AluSx SINE Alu 1 292 -20 1883 112 14 20 chr1 10211612 10211908 -232452445 - AluY SINE Alu -17 294 1 835 116 16 16 chr1 10211912 10212041 -232452312 - AluSp SINE Alu -172 141 13 2269 75 7 0 chr1 10214636 10214931 -232449422 + AluY SINE Alu 2 298 -13 1687 143 4 8 chr1 10215424 10215682 -232448671 - AluSq SINE Alu -56 257 1 965 183 106 84 chr1 10215688 10215905 -232448448 - AluJb SINE Alu -20 292 66 2099 110 0 0 chr1 10215905 10216196 -232448157 + AluSg SINE Alu 1 291 -19 965 183 106 84 chr1 10216196 10216251 -232448102 - AluJb SINE Alu -246 66 14 22 35 0 0 chr1 10216262 10216291 -232448062 + AT_rich Low_complexity Low_complexity 1 29 0 1286 121 15 5 chr1 10216291 10216489 -232447864 - AluSx SINE Alu -112 200 1 1952 132 10 0 chr1 10218675 10218964 -232445389 + AluSc SINE Alu 1 292 -17 269 196 18 0 chr1 10219179 10219235 -232445118 - MLT1I LTR MaLR 0 409 353 1647 190 0 0 chr1 10219333 10219612 -232444741 + AluJb SINE Alu 9 287 -25 1880 144 10 0 chr1 10219632 10219931 -232444422 + AluSx SINE Alu 7 308 -4 1776 132 10 46 chr1 10219935 10220080 -232444273 + AluSx SINE Alu 1 131 -181 2226 98 0 3 chr1 10220080 10220385 -232443968 + AluSg SINE Alu 1 304 -6 1776 132 10 46 chr1 10220385 10220542 -232443811 + AluSx SINE Alu 131 292 -20 849 226 76 4 chr1 10220585 10220860 -232443493 - L1 LINE L1 -1903 4243 3949 934 92 0 0 chr1 10220920 10221040 -232443313 - AluSq/x SINE Alu -192 120 1 1498 230 72 0 chr1 10221055 10221473 -232442880 - L1 LINE L1 -2191 3955 3508 252 219 16 16 chr1 10221472 10221536 -232442817 - L1MC3 LINE L1 -13 7772 7709 * 250 203 47 31 chr1 10221599 10221663 -232442690 - L1MC3 LINE L1 -225 7560 7496 1206 163 80 73 chr1 10224629 10224929 -232439424 - AluJo SINE Alu -10 302 1 1939 114 28 7 chr1 10225005 10225294 -232439059 + AluSg SINE Alu 1 295 -15 1525 179 26 23 chr1 10225304 10225443 -232438910 + AluSx SINE Alu 1 138 -174 2099 111 3 3 chr1 10225443 10225740 -232438613 + AluSq SINE Alu 3 299 -14 1525 179 26 23 chr1 10225740 10225908 -232438445 + AluSx SINE Alu 138 309 -3 918 70 0 8 chr1 10226000 10226128 -232438225 - FLAM_C SINE Alu -16 127 1 433 71 57 43 chr1 10226130 10226200 -232438153 - Alu SINE Alu -19 292 222 968 118 51 0 chr1 10226200 10226377 -232437976 - LTR10A LTR ERV1 0 609 376 2536 62 0 0 chr1 10226379 10226687 -232437666 - AluY SINE Alu -3 308 1 180 0 0 0 chr1 10226696 10226716 -232437637 + (T)n Simple_repeat Simple_repeat 1 20 0 1703 108 13 0 chr1 10226716 10226948 -232437405 - AluSg SINE Alu -75 235 1 2236 92 3 3 chr1 10227001 10227305 -232437048 - AluSx SINE Alu -8 304 1 2107 102 3 13 chr1 10227305 10227609 -232436744 - AluSx SINE Alu -11 301 1 514 91 0 109 chr1 10227609 10227682 -232436671 - Harlequin LTR ERV1 -5187 1709 1650 2292 54 3 10 chr1 10227682 10227980 -232436373 + AluY SINE Alu 1 296 -15 514 91 0 109 chr1 10227980 10228016 -232436337 - Harlequin LTR ERV1 -5246 1650 1612 321 100 0 0 chr1 10228016 10228066 -232436287 + (TA)n Simple_repeat Simple_repeat 2 51 0 726 218 39 10 chr1 10228083 10228289 -232436064 + AluY SINE Alu 1 212 -99 21 57 0 0 chr1 10228461 10228496 -232435857 + GC_rich Low_complexity Low_complexity 1 35 0 312 200 0 0 chr1 10228518 10228598 -232435755 + G-rich Low_complexity Low_complexity 3 82 0 2308 67 3 3 chr1 10229100 10229399 -232434954 + AluY SINE Alu 1 299 -12 1244 147 0 28 chr1 10229399 10229581 -232434772 + AluSq SINE Alu 134 312 -1 916 208 0 0 chr1 10229581 10229740 -232434613 + AluJo/FRAM SINE Alu 137 295 -7 255 319 104 15 chr1 10229777 10230047 -232434306 - L1MEd LINE L1 -5206 913 620 1776 144 14 7 chr1 10230246 10230538 -232433815 - AluJb SINE Alu -18 294 1 355 299 58 39 chr1 10230541 10230695 -232433658 - L1MEd LINE L1 -5949 170 14 25 0 0 0 chr1 10231210 10231235 -232433118 + GC_rich Low_complexity Low_complexity 1 25 0 202 205 26 39 chr1 10233376 10233454 -232430899 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr1 10236053 10236077 -232428276 + (CGAG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr1 10236184 10236207 -232428146 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 10236299 10236320 -232428033 + GC_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr1 10240062 10240111 -232424242 + GC_rich Low_complexity Low_complexity 1 49 0 2312 43 0 3 chr1 10243308 10243617 -232420736 - AluY SINE Alu 0 308 1 1959 109 25 0 chr1 10243771 10244046 -232420307 - AluSx SINE Alu -30 282 1 1743 161 35 0 chr1 10244048 10244333 -232420020 - AluJb SINE Alu -16 296 2 674 197 16 8 chr1 10244337 10244464 -232419889 - FLAM_C SINE Alu -5 128 1 1206 163 80 73 chr1 10245677 10245977 -232418376 - AluJo SINE Alu -10 302 1 1949 119 27 7 chr1 10246053 10246347 -232418006 + AluSg SINE Alu 1 300 -10 1544 175 26 23 chr1 10246356 10246495 -232417858 + AluSx SINE Alu 1 138 -174 2130 104 3 3 chr1 10246495 10246792 -232417561 + AluSq SINE Alu 3 299 -14 1544 175 26 23 chr1 10246792 10246960 -232417393 + AluSx SINE Alu 138 309 -3 894 78 0 8 chr1 10247052 10247180 -232417173 - FLAM_C SINE Alu -16 127 1 484 95 0 40 chr1 10247182 10247256 -232417097 - Alu SINE Alu -19 292 222 1016 115 48 0 chr1 10247256 10247443 -232416910 - LTR10A LTR ERV1 0 609 366 2386 65 20 0 chr1 10247443 10247737 -232416616 - AluY SINE Alu -11 300 1 2120 115 3 3 chr1 10247737 10248041 -232416312 - AluSx SINE Alu -8 304 1 579 131 0 0 chr1 10248041 10248140 -232416213 - Harlequin LTR ERV1 -5187 1709 1611 2341 73 3 3 chr1 10248172 10248475 -232415878 + AluY SINE Alu 1 303 -8 243 0 0 0 chr1 10249184 10249211 -232415142 + (CATTG)n Simple_repeat Simple_repeat 2 28 0 2029 135 6 3 chr1 10249211 10249515 -232414838 - AluSx SINE Alu -4 308 1 2286 88 3 3 chr1 10249597 10249904 -232414449 + AluSp SINE Alu 1 307 -6 198 0 0 0 chr1 10250158 10250180 -232414173 + (TG)n Simple_repeat Simple_repeat 1 22 0 8224 51 20 5 chr1 10250195 10251187 -232413166 - LTR13 LTR ERVK 0 1007 1 1907 140 0 7 chr1 10251187 10251479 -232412874 + AluSx SINE Alu 8 297 -15 296 235 52 17 chr1 10251492 10251607 -232412746 - L1 LINE L1 -1462 4684 4566 708 254 55 0 chr1 10251631 10251796 -232412557 - FRAM SINE Alu -9 167 1 2858 219 49 46 chr1 10251796 10252005 -232412348 - L1 LINE L1 -1690 4456 4249 2398 82 0 0 chr1 10252005 10252308 -232412045 - AluY SINE Alu 0 311 9 2858 219 49 46 chr1 10252308 10253042 -232411311 - L1 LINE L1 -1897 4249 3510 262 219 31 16 chr1 10253043 10253107 -232411246 - L1MC3 LINE L1 -12 7773 7709 237 197 49 33 chr1 10253173 10253234 -232411119 - L1MC3 LINE L1 -228 7557 7496 1842 128 23 20 chr1 10255034 10255338 -232409015 + AluSq SINE Alu 1 305 -8 853 171 12 24 chr1 10255338 10255502 -232408851 + AluSg/x SINE Alu 138 299 -11 856 93 0 16 chr1 10255583 10255712 -232408641 - FLAM_C SINE Alu -16 127 1 1976 118 30 3 chr1 10255722 10256026 -232408327 - AluSx SINE Alu 0 312 1 481 128 23 35 chr1 10256030 10256116 -232408237 - Alu SINE Alu -5 305 221 2629 152 79 0 chr1 10256130 10256637 -232407716 - LTR10A LTR ERV1 -62 547 1 25 35 0 52 chr1 10257543 10257601 -232406752 + GC_rich Low_complexity Low_complexity 1 55 0 189 0 0 0 chr1 10257714 10257735 -232406618 + (CGGGG)n Simple_repeat Simple_repeat 2 22 0 1831 110 41 10 chr1 10258445 10258737 -232405616 - AluSg SINE Alu -7 303 3 1850 50 50 0 chr1 10258747 10258985 -232405368 - AluY SINE Alu -2 309 60 1108 39 0 0 chr1 10258985 10259112 -232405241 - AluY SINE Alu -176 135 9 1844 148 0 0 chr1 10259120 10259410 -232404943 - AluSc SINE Alu -19 290 1 516 231 0 0 chr1 10259673 10259781 -232404572 - FLAM_A SINE Alu -15 127 20 2347 65 13 0 chr1 10259799 10260106 -232404247 - AluY SINE Alu 0 311 1 1925 130 3 7 chr1 10260117 10260417 -232403936 - AluSx SINE Alu -13 299 1 2173 86 7 0 chr1 10262132 10262424 -232401929 - AluY SINE Alu -17 294 1 1346 149 0 0 chr1 10262431 10262639 -232401714 - AluSg/x SINE Alu -20 292 85 935 167 61 5 chr1 10262642 10262840 -232401513 - AluSg/x SINE Alu -17 293 85 2075 79 18 0 chr1 10263294 10263620 -232400733 - AluSp SINE Alu 0 331 1 1834 144 17 0 chr1 10263622 10263913 -232400440 - AluSx SINE Alu -16 296 1 451 303 8 6 chr1 10264870 10265292 -232399061 + (CA)n Simple_repeat Simple_repeat 1 422 0 283 300 10 3 chr1 10265323 10265643 -232398710 + (CA)n Simple_repeat Simple_repeat 1 322 0 300 319 5 32 chr1 10265664 10265849 -232398504 + (CA)n Simple_repeat Simple_repeat 1 180 0 2057 114 0 10 chr1 10266793 10267090 -232397263 - AluSg SINE Alu -16 294 1 1201 171 15 0 chr1 10268422 10268627 -232395726 + AluJb SINE Alu 85 292 -20 819 115 23 8 chr1 10268628 10268758 -232395595 + AluY SINE Alu 1 132 -179 1417 152 24 110 chr1 10268772 10269107 -232395246 + AluSp SINE Alu 1 306 -7 1747 122 3 91 chr1 10269107 10269426 -232394927 + AluSx SINE Alu 1 292 -20 1961 112 10 17 chr1 10269801 10270097 -232394256 - AluY SINE Alu -17 294 1 835 116 16 16 chr1 10270101 10270230 -232394123 - AluSp SINE Alu -172 141 13 2269 75 7 0 chr1 10272826 10273121 -232391232 + AluY SINE Alu 2 298 -13 1687 143 4 8 chr1 10273614 10273872 -232390481 - AluSq SINE Alu -56 257 1 965 183 106 84 chr1 10273878 10274095 -232390258 - AluJb SINE Alu -20 292 66 2076 114 0 0 chr1 10274095 10274385 -232389968 + AluSg SINE Alu 1 290 -20 965 183 106 84 chr1 10274385 10274440 -232389913 - AluJb SINE Alu -246 66 14 22 35 0 0 chr1 10274451 10274480 -232389873 + AT_rich Low_complexity Low_complexity 1 29 0 1286 121 15 5 chr1 10274480 10274678 -232389675 - AluSq SINE Alu -113 200 1 1952 132 10 0 chr1 10276870 10277159 -232387194 + AluSc SINE Alu 1 292 -17 269 196 18 0 chr1 10277374 10277430 -232386923 - MLT1I LTR MaLR 0 409 353 1647 190 0 0 chr1 10277528 10277807 -232386546 + AluJb SINE Alu 9 287 -25 1856 147 10 0 chr1 10277827 10278126 -232386227 + AluSx SINE Alu 7 308 -4 1811 133 10 43 chr1 10278130 10278274 -232386079 + AluSx SINE Alu 1 131 -181 2200 102 0 3 chr1 10278274 10278578 -232385775 + AluSg SINE Alu 1 303 -7 1811 133 10 43 chr1 10278578 10278735 -232385618 + AluSx SINE Alu 131 292 -20 849 226 76 4 chr1 10278778 10279053 -232385300 - L1 LINE L1 -1903 4243 3949 934 92 0 0 chr1 10279113 10279233 -232385120 - AluSq/x SINE Alu -193 120 1 1498 230 72 0 chr1 10279248 10279666 -232384687 - L1 LINE L1 -2191 3955 3508 252 219 16 16 chr1 10279665 10279729 -232384624 - L1MC3 LINE L1 -13 7772 7709 * 250 203 47 31 chr1 10279792 10279856 -232384497 - L1MC3 LINE L1 -225 7560 7496 1206 163 80 73 chr1 10282825 10283125 -232381228 - AluJo SINE Alu -10 302 1 1963 111 28 7 chr1 10283201 10283490 -232380863 + AluSg SINE Alu 1 295 -15 1525 179 26 23 chr1 10283500 10283639 -232380714 + AluSx SINE Alu 1 138 -174 2099 111 3 3 chr1 10283639 10283936 -232380417 + AluSq SINE Alu 3 299 -14 1525 179 26 23 chr1 10283936 10284104 -232380249 + AluSx SINE Alu 138 309 -3 905 78 0 8 chr1 10284196 10284324 -232380029 - FLAM_C SINE Alu -16 127 1 506 81 0 40 chr1 10284326 10284400 -232379953 - Alu SINE Alu -19 292 222 968 118 51 0 chr1 10284400 10284577 -232379776 - LTR10A LTR ERV1 0 609 376 2536 62 0 0 chr1 10284579 10284887 -232379466 - AluY SINE Alu -3 308 1 180 0 0 0 chr1 10284896 10284916 -232379437 + (T)n Simple_repeat Simple_repeat 1 20 0 1703 108 13 0 chr1 10284916 10285148 -232379205 - AluSg SINE Alu -75 235 1 2277 91 3 3 chr1 10285201 10285510 -232378843 - AluSx SINE Alu -3 309 1 2107 102 3 13 chr1 10285510 10285814 -232378539 - AluSx SINE Alu -11 301 1 522 90 0 108 chr1 10285814 10285887 -232378466 - Harlequin LTR ERV1 -5187 1709 1650 2437 44 0 7 chr1 10285887 10286185 -232378168 + AluY SINE Alu 1 296 -15 522 90 0 108 chr1 10286185 10286222 -232378131 - Harlequin LTR ERV1 -5246 1650 1611 291 146 0 0 chr1 10286222 10286277 -232378076 + (TA)n Simple_repeat Simple_repeat 2 56 0 2285 49 3 14 chr1 10286288 10286576 -232377777 + AluY SINE Alu 1 285 -26 448 132 44 0 chr1 10287326 10287417 -232376936 - FRAM SINE Alu -52 124 30 2327 80 3 0 chr1 10290335 10290635 -232373718 + AluSx SINE Alu 1 301 -11 1797 98 132 0 chr1 10291527 10291793 -232372560 + AluY SINE Alu 1 301 0 266 136 0 0 chr1 10292510 10292554 -232371799 + Alu SINE Alu 1 44 -259 2017 115 0 55 chr1 10292554 10292884 -232371469 + AluSx SINE Alu 1 312 0 1165 96 12 0 chr1 10292885 10293051 -232371302 + AluSq SINE Alu 137 304 -9 2053 110 10 3 chr1 10294276 10294576 -232369777 + AluSg SINE Alu 1 302 -8 434 174 0 0 chr1 10294998 10295067 -232369286 + FLAM_A SINE Alu 8 76 -56 2299 84 7 0 chr1 10295239 10295548 -232368805 + AluY SINE Alu 1 311 0 1203 151 39 131 chr1 10295556 10295692 -232368661 + AluYb8 SINE Alu 1 148 -170 2283 87 3 3 chr1 10295692 10295991 -232368362 + AluY SINE Alu 1 299 -12 1203 151 39 131 chr1 10295991 10296191 -232368162 + AluYb8 SINE Alu 148 306 -12 2137 110 7 0 chr1 10298738 10299039 -232365314 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr1 10299317 10299346 -232365007 + AT_rich Low_complexity Low_complexity 1 29 0 681 130 10 0 chr1 10299393 10299493 -232364860 + AluY SINE Alu 44 144 -167 2243 70 0 54 chr1 10299493 10299808 -232364545 + AluY SINE Alu 1 298 -13 1461 198 21 3 chr1 10301715 10302003 -232362350 + AluJo SINE Alu 1 293 -19 1930 89 0 124 chr1 10302013 10302150 -232362203 + AluSq SINE Alu 1 73 -230 1569 88 0 5 chr1 10302150 10302355 -232361998 + AluY SINE Alu 1 204 -107 1930 89 0 124 chr1 10302355 10302555 -232361798 + AluSq SINE Alu 73 296 -7 2156 106 0 0 chr1 10303130 10303443 -232360910 + AluSx SINE Alu 1 313 0 1886 142 0 14 chr1 10303511 10303806 -232360547 + AluSx SINE Alu 1 291 -21 2011 103 34 0 chr1 10303928 10304220 -232360133 + AluSx SINE Alu 1 302 -10 690 238 18 24 chr1 10304220 10304388 -232359965 + AluJb SINE Alu 137 303 -9 352 272 24 16 chr1 10305339 10305464 -232358889 + L1MB8 LINE L1 6041 6166 -12 1522 176 19 4 chr1 10305593 10305726 -232358627 - AluSq SINE Alu -47 266 137 1917 128 17 3 chr1 10305726 10306023 -232358330 - AluSp SINE Alu -11 302 2 1522 176 19 4 chr1 10306023 10306151 -232358202 - AluSq SINE Alu -176 137 1 945 201 183 0 chr1 10306197 10306426 -232357927 - AluJo SINE Alu -24 288 18 647 221 8 0 chr1 10306705 10306836 -232357517 + FLAM_C SINE Alu 2 133 0 216 292 104 42 chr1 10306868 10306964 -232357389 - MIR SINE MIR -5 257 156 2237 98 3 0 chr1 10307084 10307381 -232356972 - AluSg SINE Alu -12 298 1 2071 120 0 23 chr1 10309251 10309559 -232354794 + AluSg1 SINE Alu 1 301 -8 1952 104 0 38 chr1 10309570 10309859 -232354494 + AluSx SINE Alu 1 278 -34 195 42 0 0 chr1 10310386 10310410 -232353943 + (CACG)n Simple_repeat Simple_repeat 4 27 0 1925 50 0 114 chr1 10311058 10311357 -232352996 + AluY SINE Alu 1 265 -46 1283 156 4 39 chr1 10311977 10312208 -232352145 + AluSx SINE Alu 3 225 -87 205 175 0 0 chr1 10312399 10312439 -232351914 + (CCCCAA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr1 10313445 10313467 -232350886 + GC_rich Low_complexity Low_complexity 1 22 0 233 271 160 7 chr1 10314081 10314225 -232350128 + L2 LINE L2 2286 2451 -863 312 280 69 42 chr1 10316071 10316253 -232348100 + MIR SINE MIR 15 202 -60 1427 202 40 64 chr1 10317088 10317544 -232346809 - L1 LINE L1 -2192 3954 3510 292 169 31 15 chr1 10317545 10317610 -232346743 - L1MD3 LINE L1 -10 7985 7920 252 203 47 31 chr1 10317672 10317736 -232346617 - L1MC3 LINE L1 -225 7560 7496 750 170 7 30 chr1 10520166 10520301 -232144052 - THE1C LTR MaLR -243 132 1 462 231 112 35 chr1 10520301 10520466 -232143887 - MLT1I LTR MaLR -227 182 5 903 334 18 21 chr1 10521397 10521780 -232142573 - MLT1I LTR MaLR -1 408 27 521 261 30 18 chr1 10522573 10522738 -232141615 + L1M4c LINE L1 1223 1389 -4995 381 261 85 33 chr1 10522751 10522904 -232141449 + L1M4 LINE L1 1357 1517 -5025 2048 282 59 46 chr1 10522905 10524193 -232140160 + L2 LINE L2 1994 3312 -1 2270 109 0 0 chr1 10525516 10525810 -232138543 + AluY SINE Alu 1 294 -17 189 0 0 0 chr1 10525842 10525863 -232138490 + (A)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chr1 10526003 10526026 -232138327 + (A)n Simple_repeat Simple_repeat 1 23 0 858 337 14 7 chr1 10526221 10526518 -232137835 - MLT1K LTR MaLR -5 583 285 393 297 27 49 chr1 10526524 10526709 -232137644 - MLT1K LTR MaLR -406 182 2 297 377 0 0 chr1 10528011 10528157 -232136196 + L1MC4a LINE L1 5754 5899 -1909 478 241 166 0 chr1 10528239 10528384 -232135969 + MLT1J LTR MaLR 53 221 -290 180 244 22 0 chr1 10528487 10528532 -232135821 - MIR SINE MIR -107 155 110 395 304 152 17 chr1 10528587 10528883 -232135470 - LTR16C LTR ERVL -16 475 140 403 248 4 54 chr1 10529978 10530118 -232134235 + L1ME2 LINE L1 5687 5826 -336 1241 204 37 102 chr1 10530126 10530357 -232133996 - MLT1A2 LTR MaLR -8 366 168 2130 117 0 7 chr1 10530357 10530656 -232133697 - AluSx SINE Alu -15 297 1 1241 204 37 102 chr1 10530656 10530807 -232133546 - MLT1A2 LTR MaLR -206 168 9 1176 239 32 13 chr1 10530822 10531131 -232133222 + L1ME2 LINE L1 5841 6155 -9 216 174 0 43 chr1 10531220 10531276 -232133077 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 2924 72 5 10 chr1 10531286 10531677 -232132676 + L1PA8 LINE L1 5782 6170 -2 2186 186 46 72 chr1 10532214 10532783 -232131570 - MLT2B3 LTR ERVL 0 554 1 215 357 135 0 chr1 10532851 10533036 -232131317 + MIR SINE MIR 37 246 -16 271 293 0 0 chr1 10533808 10533883 -232130470 - L2 LINE L2 -5 3308 3234 712 199 114 5 chr1 10534256 10534457 -232129896 - L2 LINE L2 -337 2977 2755 245 312 29 0 chr1 10534469 10534559 -232129794 + MIR SINE MIR 60 135 -73 189 171 0 0 chr1 10534565 10534600 -232129753 + (ATG)n Simple_repeat Simple_repeat 3 37 0 2395 103 50 8 chr1 10535445 10535804 -232128549 + THE1C LTR MaLR 2 375 0 280 280 9 28 chr1 10536706 10536813 -232127540 + (TA)n Simple_repeat Simple_repeat 2 106 0 189 0 0 0 chr1 10536814 10536835 -232127518 + (TG)n Simple_repeat Simple_repeat 2 22 0 571 311 11 6 chr1 10536926 10537106 -232127247 - MIR SINE MIR -21 241 61 269 302 23 0 chr1 10537339 10537425 -232126928 + L2 LINE L2 3183 3270 -2 421 291 127 12 chr1 10537827 10538071 -232126282 - L2 LINE L2 0 3313 3042 2447 115 8 21 chr1 10538176 10538558 -232125795 - L1PA12 LINE L1 -242 5926 5550 503 235 35 0 chr1 10538567 10538682 -232125671 + L2 LINE L2 3176 3294 -19 2234 88 0 24 chr1 10538976 10539291 -232125062 + AluSq SINE Alu 4 313 0 929 227 100 0 chr1 10540323 10540583 -232123770 + MER33 DNA MER1_type 9 294 -30 495 319 11 21 chr1 10540590 10540781 -232123572 - L2 LINE L2 -46 3267 3079 2248 113 3 0 chr1 10541179 10541481 -232122872 - AluSx SINE Alu -9 303 1 545 224 32 0 chr1 10541523 10541648 -232122705 - MER5A DNA MER1_type 0 189 61 990 229 76 8 chr1 10541659 10541921 -232122432 - MER33 DNA MER1_type -36 288 9 274 196 0 0 chr1 10542023 10542074 -232122279 - MER5A DNA MER1_type -138 51 1 358 296 58 17 chr1 10542079 10542251 -232122102 + HAL1 LINE L1 2282 2460 -47 22 70 0 0 chr1 10543402 10543445 -232120908 + AT_rich Low_complexity Low_complexity 1 43 0 620 217 112 7 chr1 10543485 10543637 -232120716 - MER58C DNA MER1_type -2 213 46 231 291 145 47 chr1 10543657 10543891 -232120462 - L1ME LINE L1 -335 5835 5579 319 301 26 18 chr1 10544149 10544262 -232120091 + MIR SINE MIR 22 135 -127 4032 68 2 2 chr1 10544363 10544876 -232119477 - L1PA10 LINE L1 0 6168 5656 785 251 84 42 chr1 10544977 10545500 -232118853 - L2 LINE L2 -2 3311 2748 2352 107 3 3 chr1 10545575 10545883 -232118470 + AluSx SINE Alu 3 310 -2 206 300 100 18 chr1 10545890 10546000 -232118353 - L2 LINE L2 -481 2833 2715 295 248 40 10 chr1 10546046 10546147 -232118206 - L2 LINE L2 -495 2819 2716 189 0 0 0 chr1 10546170 10546191 -232118162 + (CTGGGG)n Simple_repeat Simple_repeat 1 21 0 355 226 124 1 chr1 10546215 10546319 -232118034 - MLT1F LTR MaLR -250 292 189 260 199 20 27 chr1 10546320 10546466 -232117887 + (CAGAGA)n Simple_repeat Simple_repeat 4 148 0 2335 141 23 62 chr1 10546479 10546692 -232117661 + MSTB LTR MaLR 1 190 -236 2368 116 0 0 chr1 10546692 10546995 -232117358 - AluSx SINE Alu -9 303 1 2335 141 23 62 chr1 10546995 10547220 -232117133 + MSTB LTR MaLR 190 422 -4 3021 181 60 6 chr1 10547323 10548128 -232116225 - L1MB5 LINE L1 -222 5952 5112 186 238 155 48 chr1 10548245 10548329 -232116024 + MIR SINE MIR 170 262 0 2296 107 7 0 chr1 10548763 10549061 -232115292 + AluSx SINE Alu 1 300 -12 569 266 94 112 chr1 10549142 10549340 -232115013 + MLT1L LTR MaLR 46 246 -369 2034 138 0 35 chr1 10549340 10549651 -232114702 + AluSx SINE Alu 1 300 -12 569 266 94 112 chr1 10549651 10550024 -232114329 + MLT1L LTR MaLR 246 607 -8 354 259 26 26 chr1 10550036 10550152 -232114201 - 7SK RNA RNA -70 123 8 207 125 0 0 chr1 10550228 10550268 -232114085 + (GA)n Simple_repeat Simple_repeat 2 41 0 1472 195 29 102 chr1 10550535 10550955 -232113398 - MLT2D LTR ERVL -1 413 25 2839 47 0 6 chr1 10550955 10551299 -232113054 + L1PA8 LINE L1 5823 6164 -8 1275 113 0 0 chr1 10551500 10551660 -232112693 - AluSg SINE Alu -150 160 1 718 173 154 0 chr1 10551678 10551840 -232112513 + MER53 DNA DNA 3 189 0 459 256 31 31 chr1 10552376 10552536 -232111817 + MLT1I LTR MaLR 5 164 -245 467 256 141 0 chr1 10552575 10552731 -232111622 + MLT1I LTR MaLR 232 409 0 1683 206 11 11 chr1 10552735 10553099 -232111254 + MLT1A1 LTR MaLR 2 365 0 233 218 23 69 chr1 10553426 10553513 -232110840 + L2 LINE L2 2697 2779 -535 1210 190 5 0 chr1 10553771 10553982 -232110371 - MLT1F LTR MaLR -1 541 330 443 201 45 16 chr1 10554082 10554213 -232110140 - MLT1F LTR MaLR -376 191 5 3152 250 134 19 chr1 10556929 10557373 -232106980 + L1M4 LINE L1 3750 4141 -2005 2479 58 14 0 chr1 10557373 10557666 -232106687 - AluY SINE Alu -14 297 1 3152 250 134 19 chr1 10557666 10558552 -232105801 + L1M4 LINE L1 4141 5234 -912 477 180 40 0 chr1 10558694 10558794 -232105559 - L1 LINE L1 -3677 3888 3785 520 196 29 0 chr1 10558827 10558929 -232105424 + L1M1 LINE L1 1301 1405 -6160 16293 161 32 4 chr1 10558936 10561611 -232102742 - L1 LINE L1 -4802 2763 13 286 288 0 0 chr1 10561801 10561881 -232102472 + L2 LINE L2 3233 3312 -1 962 205 68 0 chr1 10561957 10562162 -232102191 + MER20 DNA MER1_type 1 219 0 214 280 0 0 chr1 10563196 10563246 -232101107 - MIR SINE MIR -144 118 69 1908 174 41 33 chr1 10563292 10563683 -232100670 - MSTD LTR MaLR -2 394 1 341 188 229 0 chr1 10564687 10564783 -232099570 + MER91C DNA MER1_type 23 140 0 277 336 66 16 chr1 10564841 10564963 -232099390 + MIR SINE MIR 9 136 -126 360 269 39 0 chr1 10565066 10565170 -232099183 - MIR SINE MIR -70 192 85 665 305 58 38 chr1 10565176 10565612 -232098741 - MLT1K LTR MaLR -6 582 69 193 182 0 0 chr1 10565672 10565705 -232098648 + MIR SINE MIR 218 250 -12 207 250 21 0 chr1 10566047 10566095 -232098258 - MIR SINE MIR -130 78 30 266 206 79 16 chr1 10567183 10567246 -232097107 + MER103 DNA DNA 51 117 -49 340 255 29 0 chr1 10567546 10567648 -232096705 - MER103 DNA DNA -47 119 15 4235 140 19 107 chr1 10568203 10569761 -232094592 + pTR5 LTR ERV1 743 2605 -1 380 307 111 16 chr1 10569944 10570133 -232094220 + MIR SINE MIR 20 226 -36 1746 124 3 42 chr1 10570633 10570940 -232093413 - AluSx SINE Alu -15 297 3 2190 85 7 7 chr1 10570979 10571261 -232093092 - AluY SINE Alu -29 282 1 1850 178 104 31 chr1 10573212 10573627 -232090726 + MLT2B1 LTR ERVL 8 452 -68 267 103 0 0 chr1 10573627 10573666 -232090687 + (TA)n Simple_repeat Simple_repeat 2 40 0 560 303 139 29 chr1 10573791 10574101 -232090252 + L2 LINE L2 2970 3313 0 651 254 34 54 chr1 10574262 10574467 -232089886 + MER20 DNA MER1_type 17 217 -2 285 217 12 36 chr1 10575597 10575680 -232088673 + MER5A DNA MER1_type 1 81 -108 1198 186 32 14 chr1 10575785 10576006 -232088347 + AluJb SINE Alu 76 300 -12 1721 204 78 109 chr1 10579117 10579451 -232084902 + LTR1B LTR ERV1 52 395 -431 2219 99 3 3 chr1 10579451 10579745 -232084608 - AluSg SINE Alu -16 294 1 1721 204 78 109 chr1 10579745 10580127 -232084226 + LTR1B LTR ERV1 395 746 -80 1244 182 29 0 chr1 10580929 10581138 -232083215 + MER20 DNA MER1_type 5 219 0 988 181 6 0 chr1 10581140 10581306 -232083047 + MLT1C LTR MaLR 2 168 -299 770 159 0 8 chr1 10581341 10581467 -232082886 + AluY SINE Alu 2 126 -185 289 317 49 32 chr1 10581590 10581836 -232082517 + L1ME4a LINE L1 4410 4659 -1487 1387 101 0 0 chr1 10582045 10582263 -232082090 + AluSc SINE Alu 105 322 0 627 292 90 17 chr1 10582564 10582852 -232081501 + L1ME4a LINE L1 5393 5701 -420 1978 137 0 14 chr1 10582960 10583285 -232081068 - AluSx SINE Alu 0 321 1 21 0 0 0 chr1 10583363 10583384 -232080969 + AT_rich Low_complexity Low_complexity 1 21 0 339 289 93 25 chr1 10583393 10583597 -232080756 + L1ME4a LINE L1 5899 6116 -5 208 311 78 39 chr1 10583742 10583845 -232080508 - L2 LINE L2 -13 3259 3153 591 342 18 9 chr1 10584100 10584322 -232080031 - MIR SINE MIR -17 245 22 278 265 29 15 chr1 10584637 10584705 -232079648 - L2 LINE L2 -2 3270 3202 292 273 239 30 chr1 10584729 10585059 -232079294 + L2 LINE L2 2246 2644 -670 1246 125 22 54 chr1 10586205 10586429 -232077924 + THE1C LTR MaLR 159 375 0 361 239 11 23 chr1 10586580 10586668 -232077685 + MLT1I LTR MaLR 318 404 -5 209 32 0 32 chr1 10586965 10586996 -232077357 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 703 209 0 0 chr1 10586998 10587108 -232077245 - FLAM_A SINE Alu -19 114 5 253 250 106 29 chr1 10588322 10588426 -232075927 - MIR3 SINE MIR -8 200 89 26 50 0 0 chr1 10588890 10588930 -232075423 + AT_rich Low_complexity Low_complexity 1 40 0 4723 265 75 27 chr1 10589393 10590191 -232074162 + L1ME1 LINE L1 34 792 -5423 495 0 0 0 chr1 10590191 10590246 -232074107 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4723 265 75 27 chr1 10590246 10591368 -232072985 + L1ME1 LINE L1 792 1859 -4356 1131 156 80 25 chr1 10591368 10591567 -232072786 - MER6B DNA MER2_type 0 210 1 4723 265 75 27 chr1 10591567 10592986 -232071367 + L1ME1 LINE L1 1859 3512 -2703 2372 227 51 26 chr1 10592989 10593675 -232070678 + L1ME1 LINE L1 5337 6039 -196 1577 80 5 0 chr1 10593780 10593993 -232070360 - L1P LINE L1 -5932 214 1 7162 122 15 13 chr1 10593994 10595665 -232068688 + L1MA3 LINE L1 4628 6305 0 960 294 32 38 chr1 10595831 10596274 -232068079 - L2 LINE L2 -19 3294 2855 771 229 66 5 chr1 10596274 10596599 -232067754 - MSTD LTR MaLR 0 396 1 536 286 95 17 chr1 10596607 10596848 -232067505 - L2 LINE L2 -508 2806 2547 643 249 306 10 chr1 10596850 10597248 -232067105 + L2 LINE L2 2029 2544 -770 893 176 60 11 chr1 10598210 10598392 -232065961 - MER20 DNA MER1_type 0 219 29 757 157 0 0 chr1 10599378 10599480 -232064873 - FLAM_C SINE Alu -33 110 9 27 0 0 0 chr1 10599512 10599539 -232064814 + AT_rich Low_complexity Low_complexity 1 27 0 2151 132 0 0 chr1 10599546 10599841 -232064512 - AluSx SINE Alu -17 295 1 625 243 105 43 chr1 10600437 10600713 -232063640 - LTR16C LTR ERVL -14 477 185 237 321 57 29 chr1 10600897 10601037 -232063316 + L2 LINE L2 2491 2634 -680 25 31 0 0 chr1 10601050 10601082 -232063271 + AT_rich Low_complexity Low_complexity 1 32 0 2085 136 0 3 chr1 10601258 10601553 -232062800 - AluSx SINE Alu -18 294 1 249 33 0 0 chr1 10601652 10601682 -232062671 + (CA)n Simple_repeat Simple_repeat 2 31 0 703 296 30 4 chr1 10602546 10602779 -232061574 + MLT1K LTR MaLR 338 576 -12 396 242 74 0 chr1 10602862 10602957 -232061396 + MIR3 SINE MIR 96 197 -11 398 274 17 8 chr1 10603550 10603667 -232060686 + MIR SINE MIR 28 145 -117 400 329 35 6 chr1 10603930 10604100 -232060253 + MIR SINE MIR 49 223 -39 180 0 0 0 chr1 10604361 10604381 -232059972 + (TA)n Simple_repeat Simple_repeat 2 21 0 233 338 127 0 chr1 10604480 10604622 -232059731 - L2 LINE L2 -1 3271 3112 820 159 33 60 chr1 10604858 10605040 -232059313 + MER45A DNA AcHobo 1 177 -1 285 340 74 37 chr1 10605053 10605215 -232059138 - L2 LINE L2 -2 3270 3103 1221 287 122 45 chr1 10605452 10605915 -232058438 - L2 LINE L2 -20 3293 2867 1142 200 5 5 chr1 10605915 10606120 -232058233 - MER3 DNA MER1_type 0 209 5 1221 287 122 45 chr1 10606120 10606567 -232057786 - L2 LINE L2 -446 2867 2311 736 255 69 39 chr1 10606698 10606902 -232057451 - MIR SINE MIR -50 212 3 487 289 101 23 chr1 10607125 10607343 -232057010 - MIR SINE MIR -12 250 16 685 292 73 9 chr1 10608379 10608612 -232055741 - MIR SINE MIR 0 262 15 208 149 81 0 chr1 10608763 10608837 -232055516 + (TA)n Simple_repeat Simple_repeat 2 81 0 30 0 0 0 chr1 10608913 10608943 -232055410 + AT_rich Low_complexity Low_complexity 1 30 0 428 125 68 11 chr1 10608948 10609215 -232055138 + (TA)n Simple_repeat Simple_repeat 1 282 0 214 307 237 0 chr1 10609320 10609434 -232054919 + L2 LINE L2 3121 3261 -11 248 292 170 61 chr1 10609945 10610287 -232054066 - L2 LINE L2 -27 3245 2867 993 303 44 26 chr1 10610533 10610922 -232053431 + LTR16C LTR ERVL 96 491 0 248 284 0 25 chr1 10611307 10611388 -232052965 + (TCCA)n Simple_repeat Simple_repeat 1 79 0 644 118 0 8 chr1 10611395 10611514 -232052839 + (TTCC)n Simple_repeat Simple_repeat 2 119 0 312 120 0 0 chr1 10611516 10611566 -232052787 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 438 69 0 0 chr1 10612258 10612316 -232052037 + (GA)n Simple_repeat Simple_repeat 1 58 0 962 113 69 25 chr1 10612334 10612493 -232051860 - THE1B LTR MaLR 0 364 199 279 265 52 52 chr1 10612736 10612872 -232051481 - L2 LINE L2 -19 3294 3159 2626 183 22 8 chr1 10612889 10613391 -232050962 + L1MB7 LINE L1 5674 6182 -2 239 333 21 50 chr1 10613512 10613653 -232050700 - L2 LINE L2 -331 2941 2805 314 287 11 0 chr1 10614392 10614479 -232049874 - MIR3 SINE MIR -53 155 68 890 183 57 104 chr1 10614706 10614985 -232049368 + L1ME3A LINE L1 5881 6146 -24 1052 228 114 30 chr1 10614985 10615435 -232048918 - MLT1E LTR MaLR 0 593 54 328 349 28 60 chr1 10615480 10615729 -232048624 + MIR SINE MIR 22 262 0 363 261 120 0 chr1 10615793 10615885 -232048468 - MIR SINE MIR -131 131 29 603 306 0 0 chr1 10617047 10617217 -232047136 - MER117 DNA MER1_type -27 170 1 264 59 0 0 chr1 10617411 10617445 -232046908 + (CA)n Simple_repeat Simple_repeat 2 35 0 189 36 0 0 chr1 10617810 10617838 -232046515 - L2 LINE L2 0 3313 3286 727 218 39 22 chr1 10617849 10618028 -232046325 + HERVL74 LTR ERVL 1389 1570 -4115 346 276 77 82 chr1 10618164 10618575 -232045778 + L1ME3A LINE L1 4064 4449 -1697 2199 105 3 16 chr1 10618575 10618881 -232045472 + AluY SINE Alu 3 304 -7 346 276 77 82 chr1 10618881 10619138 -232045215 + L1ME3A LINE L1 4449 4706 -1440 446 317 125 34 chr1 10619289 10619591 -232044762 + L1ME3A LINE L1 5266 5539 -631 2280 118 0 0 chr1 10619591 10619896 -232044457 - AluSx SINE Alu -7 305 1 446 317 125 34 chr1 10619896 10620146 -232044207 + L1ME3A LINE L1 5539 5884 -286 272 328 45 52 chr1 10620274 10620408 -232043945 - L2 LINE L2 -8 3305 3173 479 188 0 21 chr1 10620457 10620553 -232043800 + MLT1F1 LTR MaLR 474 567 0 275 114 0 0 chr1 10621237 10621281 -232043072 + MLT1F1 LTR MaLR 10 53 -489 1215 164 263 54 chr1 10621557 10621911 -232042442 + MLT1F1 LTR MaLR 140 567 0 2312 105 0 0 chr1 10622843 10623138 -232041215 - AluSx SINE Alu -15 297 3 2353 71 0 0 chr1 10623439 10623744 -232040609 + AluY SINE Alu 1 305 0 344 221 0 0 chr1 10623785 10623853 -232040500 + Charlie8 DNA MER1_type 2348 2415 -2 2005 132 0 0 chr1 10624454 10624760 -232039593 + AluSx SINE Alu 1 306 0 1058 204 104 36 chr1 10624782 10625032 -232039321 + MLT2B1 LTR ERVL 163 429 -91 354 98 0 0 chr1 10625062 10625113 -232039240 + (TC)n Simple_repeat Simple_repeat 2 52 0 293 29 0 0 chr1 10625157 10625191 -232039162 + MLT2C1 LTR ERVL 364 397 0 1440 166 4 0 chr1 10625474 10625709 -232038644 - MSTB LTR MaLR 0 426 191 2305 99 0 13 chr1 10625811 10626115 -232038238 - AluSq SINE Alu -12 301 2 362 250 143 7 chr1 10626116 10626153 -232038200 - MLT1H LTR MaLR -379 170 139 1148 229 84 38 chr1 10626153 10626498 -232037855 + MLT1A1 LTR MaLR 5 365 0 362 250 143 7 chr1 10626498 10626600 -232037753 - MLT1H LTR MaLR -410 139 12 2163 95 0 7 chr1 10627504 10627798 -232036555 - AluSg SINE Alu -14 296 5 450 267 130 31 chr1 10627960 10628252 -232036101 + LTR33 LTR ERVL 50 370 -151 1959 98 32 18 chr1 10629076 10629376 -232034977 - AluSc SINE Alu 0 304 1 756 224 27 58 chr1 10629974 10630197 -232034156 - MER20 DNA MER1_type -3 216 1 204 266 185 46 chr1 10630248 10630421 -232033932 - MIR SINE MIR -36 226 30 2232 84 10 3 chr1 10630505 10630803 -232033550 - AluY SINE Alu -11 300 1 302 250 15 0 chr1 10630994 10631062 -232033291 - Charlie8 DNA MER1_type -989 1428 1360 333 244 144 61 chr1 10631117 10631297 -232033056 - Charlie8 DNA MER1_type -2152 265 71 255 299 45 52 chr1 10631557 10631691 -232032662 + L2 LINE L2 3139 3271 -1 248 311 56 31 chr1 10631696 10631857 -232032496 - L3b LINE CR1 -208 1375 1211 2024 159 0 3 chr1 10632306 10632608 -232031745 + AluSx SINE Alu 1 301 -11 1022 173 6 11 chr1 10632608 10632787 -232031566 + AluSc SINE Alu 132 309 0 335 240 83 0 chr1 10632795 10632891 -232031462 - L1ME4a LINE L1 -16 6105 6002 271 197 49 16 chr1 10633053 10633114 -232031239 - LTR67 LTR ERVL -5 552 490 1409 161 88 102 chr1 10633617 10633653 -232030700 - MER66A LTR ERV1 -28 450 415 2875 92 3 14 chr1 10633653 10634021 -232030332 - THE1B LTR MaLR 0 364 1 1409 161 88 102 chr1 10634021 10634425 -232029928 - MER66A LTR ERV1 -63 415 97 300 233 39 39 chr1 10634550 10634653 -232029700 + MIR SINE MIR 160 262 0 233 372 47 31 chr1 10635171 10635300 -232029053 + MIR3 SINE MIR 30 160 -48 728 276 127 48 chr1 10635300 10635615 -232028738 + MER102b DNA MER1_type 1 340 -1 2146 131 20 7 chr1 10635626 10635932 -232028421 - AluSx SINE Alu -2 310 1 307 221 11 74 chr1 10636006 10636101 -232028252 - MLT1H1 LTR MaLR -13 542 454 291 185 54 0 chr1 10636210 10636302 -232028051 + (TA)n Simple_repeat Simple_repeat 2 98 0 283 288 113 48 chr1 10636303 10636933 -232027420 - L1 LINE L1 -1305 4841 4160 2055 120 0 17 chr1 10637654 10637946 -232026407 + AluSx SINE Alu 5 291 -21 319 179 0 0 chr1 10637949 10638005 -232026348 - HAL1 LINE L1 -852 1655 1600 * 1409 286 78 46 chr1 10637986 10638235 -232026118 - L1MEd LINE L1 -4655 1474 1234 1839 218 23 45 chr1 10638235 10638749 -232025604 - MLT1D LTR MaLR 0 505 3 1409 286 78 46 chr1 10638749 10638847 -232025506 - L1MEd LINE L1 -4895 1234 1141 1700 179 10 7 chr1 10638847 10639144 -232025209 + AluSx SINE Alu 1 298 -14 1409 286 78 46 chr1 10639144 10639915 -232024438 - L1MEd LINE L1 -4988 1141 328 373 290 40 0 chr1 10640004 10640128 -232024225 - L1MEd LINE L1 -5947 172 44 295 229 149 70 chr1 10640312 10640513 -232023840 + L2 LINE L2 3012 3228 -85 1188 205 111 46 chr1 10640514 10640865 -232023488 + MLT1A2 LTR MaLR 1 374 0 334 272 50 50 chr1 10641594 10641764 -232022589 - MIR SINE MIR -63 145 5 534 261 101 0 chr1 10641943 10642142 -232022211 + L1ME LINE L1 5551 5769 -393 456 289 21 14 chr1 10642304 10642446 -232021907 - MIR SINE MIR -11 251 109 1014 246 52 77 chr1 10642452 10642583 -232021770 + MLT2C2 LTR ERVL 1 134 -330 3047 86 0 10 chr1 10642583 10642990 -232021363 - L1PB1 LINE L1 0 6151 5749 1014 246 52 77 chr1 10642990 10643040 -232021313 + MLT2C2 LTR ERVL 134 184 -280 1777 112 7 19 chr1 10643040 10643309 -232021044 - L1MA1 LINE L1 -8 6294 6029 1014 246 52 77 chr1 10643309 10643636 -232020717 + MLT2C2 LTR ERVL 184 424 -40 441 0 0 0 chr1 10643636 10643685 -232020668 + (CA)n Simple_repeat Simple_repeat 2 50 0 1014 246 52 77 chr1 10643685 10643724 -232020629 + MLT2C2 LTR ERVL 424 462 -2 226 128 21 21 chr1 10643727 10643774 -232020579 - MIR SINE MIR -156 106 60 902 253 116 76 chr1 10644561 10644821 -232019532 - L1ME3 LINE L1 -329 5833 5585 2162 200 34 122 chr1 10644821 10645492 -232018861 + LTR9 LTR ERV1 1 612 0 902 253 116 76 chr1 10645492 10646165 -232018188 - L1ME3 LINE L1 -577 5585 4827 2071 140 7 0 chr1 10646165 10646458 -232017895 + AluSx SINE Alu 1 295 -17 902 253 116 76 chr1 10646458 10646733 -232017620 - L1ME3 LINE L1 -1335 4827 4565 300 283 114 61 chr1 10647169 10647547 -232016806 - L1ME3 LINE L1 -1908 4238 3841 1078 113 0 0 chr1 10647591 10647732 -232016621 - AluJb SINE Alu -171 141 1 305 261 85 21 chr1 10647732 10647885 -232016468 - L1ME3 LINE L1 -2291 3855 3695 237 221 86 4 chr1 10648714 10648801 -232015552 + MIR SINE MIR 5 97 -111 205 298 18 0 chr1 10648868 10648925 -232015428 + MIR3 SINE MIR 148 205 -3 316 284 230 37 chr1 10649283 10649579 -232014774 - L2 LINE L2 -5 3267 2915 1598 147 143 0 chr1 10649949 10650071 -232014282 + AluJb SINE Alu 1 104 -198 206 0 69 0 chr1 10650071 10650100 -232014253 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1598 147 143 0 chr1 10650100 10650235 -232014118 + AluJb SINE Alu 104 295 -7 435 114 13 38 chr1 10700327 10700406 -231963947 - L1P4 LINE L1 -542 5626 5550 503 235 35 0 chr1 10700415 10700530 -231963823 + L2 LINE L2 3176 3294 -19 2234 88 0 24 chr1 10700824 10701139 -231963214 + AluSq SINE Alu 4 313 0 929 227 100 0 chr1 10702171 10702431 -231961922 + MER33 DNA MER1_type 9 294 -30 585 278 26 26 chr1 10702438 10702665 -231961688 - L2 LINE L2 -46 3267 3041 276 143 0 0 chr1 10702929 10702971 -231961382 + AluSg/x SINE Alu 207 248 -52 1140 196 4 13 chr1 10702971 10703201 -231961152 + AluJb SINE Alu 85 312 0 328 240 83 0 chr1 10703209 10703305 -231961048 - L1ME4a LINE L1 -16 6105 6002 273 212 45 15 chr1 10703467 10703533 -231960820 - LTR67 LTR ERVL -5 552 485 221 273 246 0 chr1 10703759 10703869 -231960484 - MER91C DNA MER1_type -2 138 2 270 208 0 0 chr1 10703949 10704002 -231960351 - MLT1K LTR MaLR -531 57 5 382 190 13 0 chr1 10704164 10704243 -231960110 + L2 LINE L2 3222 3301 -12 229 261 45 11 chr1 10704244 10704332 -231960021 - L1ME4a LINE L1 -375 5746 5656 375 284 139 15 chr1 10705057 10705258 -231959095 - HAL1 LINE L1 0 2507 2282 274 196 0 0 chr1 10705263 10705314 -231959039 + MER5A DNA MER1_type 1 51 -138 990 229 76 8 chr1 10705416 10705678 -231958675 + MER33 DNA MER1_type 9 288 -36 545 224 32 0 chr1 10705689 10705814 -231958539 + MER5A DNA MER1_type 61 189 0 2193 111 7 0 chr1 10705856 10706153 -231958200 + AluSx SINE Alu 1 299 -13 307 276 10 10 chr1 10706294 10706392 -231957961 + L2 LINE L2 3174 3271 -42 554 297 82 0 chr1 10706591 10706957 -231957396 - L2 LINE L2 -253 3060 2653 1245 190 174 22 chr1 10707071 10707090 -231957263 - LTR37A LTR ERV1 -2 424 409 2572 70 0 16 chr1 10707090 10707403 -231956950 + AluSx SINE Alu 1 308 -4 1245 190 174 22 chr1 10707403 10707751 -231956602 - LTR37A LTR ERV1 -17 409 1 221 358 41 8 chr1 10707753 10707876 -231956477 - MIR SINE MIR -128 134 8 243 303 0 13 chr1 10708008 10708084 -231956269 - L2 LINE L2 -10 3262 3188 1626 187 27 97 chr1 10708460 10708904 -231955449 + MLT2D LTR ERVL 1 413 -1 207 125 0 0 chr1 10709171 10709211 -231955142 + (TC)n Simple_repeat Simple_repeat 2 41 0 354 259 26 26 chr1 10709287 10709403 -231954950 + 7SK RNA RNA 8 123 -70 594 264 94 112 chr1 10709415 10709788 -231954565 - MLT1L LTR MaLR -8 607 246 2034 138 0 35 chr1 10709788 10710099 -231954254 - AluSx SINE Alu -12 300 1 594 264 94 112 chr1 10710099 10710297 -231954056 - MLT1L LTR MaLR -369 246 46 2296 107 7 0 chr1 10710378 10710676 -231953677 - AluSx SINE Alu -12 300 1 186 238 155 48 chr1 10711109 10711193 -231953160 - MIR SINE MIR 0 262 170 3317 173 58 5 chr1 10711310 10712124 -231952229 + L1MB5 LINE L1 5112 5961 -213 564 262 62 41 chr1 10712124 10712368 -231951985 + L2 LINE L2 2410 2658 -656 198 0 0 0 chr1 10712508 10712530 -231951823 + (TC)n Simple_repeat Simple_repeat 2 23 0 2346 144 23 61 chr1 10712559 10712788 -231951565 - MSTB LTR MaLR 0 426 221 2368 116 0 0 chr1 10712788 10713091 -231951262 + AluSx SINE Alu 1 303 -9 2346 144 23 61 chr1 10713091 10713304 -231951049 - MSTB LTR MaLR -205 221 1 260 199 20 27 chr1 10713317 10713463 -231950890 + (TCTCTG)n Simple_repeat Simple_repeat 4 148 0 355 226 124 1 chr1 10713464 10713568 -231950785 + MLT1K LTR MaLR 189 292 -250 189 0 0 0 chr1 10713592 10713613 -231950740 + (CCCCAG)n Simple_repeat Simple_repeat 1 21 0 295 248 40 10 chr1 10713636 10713737 -231950616 + L2 LINE L2 2716 2819 -495 206 300 100 18 chr1 10713783 10713893 -231950460 + L2 LINE L2 2715 2833 -481 2352 107 3 3 chr1 10713900 10714208 -231950145 - AluSx SINE Alu -2 310 3 785 251 84 42 chr1 10714283 10714806 -231949547 + L2 LINE L2 2748 3311 -2 4032 68 2 2 chr1 10714907 10715420 -231948933 + L1PA10 LINE L1 5656 6168 0 319 301 26 18 chr1 10715521 10715634 -231948719 - MIR SINE MIR -127 135 22 231 291 145 47 chr1 10715892 10716126 -231948227 + L1ME LINE L1 5579 5835 -335 620 217 112 7 chr1 10716146 10716298 -231948055 + MER58C DNA MER1_type 46 213 -2 22 70 0 0 chr1 10716338 10716381 -231947972 + AT_rich Low_complexity Low_complexity 1 43 0 529 318 158 3 chr1 10716958 10717307 -231947046 - MLT1J LTR MaLR -56 455 53 297 377 0 0 chr1 10717389 10717535 -231946818 - L1MC4a LINE L1 -1909 5899 5754 393 297 27 49 chr1 10718837 10719022 -231945331 + MLT1K LTR MaLR 2 182 -406 858 337 14 7 chr1 10719028 10719325 -231945028 + MLT1K LTR MaLR 285 583 -5 207 0 0 0 chr1 10719520 10719543 -231944810 + (T)n Simple_repeat Simple_repeat 1 23 0 2284 105 0 0 chr1 10719576 10719870 -231944483 - AluY SINE Alu -17 294 1 2048 282 59 46 chr1 10721193 10722481 -231941872 - L2 LINE L2 -1 3312 1994 381 261 85 33 chr1 10722482 10722635 -231941718 - L1M4 LINE L1 -5025 1517 1357 521 261 30 18 chr1 10722648 10722813 -231941540 - L1M4c LINE L1 -4995 1389 1223 908 334 18 21 chr1 10723606 10723989 -231940364 + MLT1I LTR MaLR 27 408 -1 582 267 77 89 chr1 10724920 10725085 -231939268 + MLT1I LTR MaLR 5 171 -238 2196 143 26 37 chr1 10725085 10725464 -231938889 + THE1C LTR MaLR 1 375 0 582 267 77 89 chr1 10725464 10725703 -231938650 + MLT1I LTR MaLR 171 404 -5 209 32 0 32 chr1 10726000 10726031 -231938322 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 703 209 0 0 chr1 10726033 10726143 -231938210 - FLAM_A SINE Alu -19 114 5 253 250 106 29 chr1 10727357 10727461 -231936892 - MIR3 SINE MIR -8 200 89 26 50 0 0 chr1 10727925 10727965 -231936388 + AT_rich Low_complexity Low_complexity 1 40 0 4738 265 75 27 chr1 10728428 10729226 -231935127 + L1ME1 LINE L1 34 793 -5422 495 0 0 0 chr1 10729226 10729281 -231935072 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4738 265 75 27 chr1 10729281 10730404 -231933949 + L1ME1 LINE L1 793 1861 -4354 1131 156 80 25 chr1 10730404 10730603 -231933750 - MER6B DNA MER2_type 0 210 1 4738 265 75 27 chr1 10730603 10732022 -231932331 + L1ME1 LINE L1 1861 3512 -2703 2941 241 42 21 chr1 10732025 10732885 -231931468 + L1ME1 LINE L1 5337 6373 -30 279 265 52 52 chr1 10732986 10733122 -231931231 - L2 LINE L2 -19 3294 3159 2626 183 22 8 chr1 10733139 10733641 -231930712 + L1MB7 LINE L1 5674 6182 -2 239 333 21 50 chr1 10733762 10733903 -231930450 - L2 LINE L2 -331 2941 2805 314 287 11 0 chr1 10734642 10734729 -231929624 - MIR3 SINE MIR -53 155 68 858 209 40 79 chr1 10734956 10735233 -231929120 + L1ME3A LINE L1 5881 6146 -24 1052 228 114 30 chr1 10735233 10735683 -231928670 - MLT1E LTR MaLR 0 593 54 328 349 28 60 chr1 10735728 10735977 -231928376 + MIR SINE MIR 22 262 0 363 261 120 0 chr1 10736041 10736133 -231928220 - MIR SINE MIR -131 131 29 467 103 26 0 chr1 10736509 10736587 -231927766 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 514 301 61 25 chr1 10736915 10737111 -231927242 - MIR SINE MIR -54 208 6 694 265 158 56 chr1 10738178 10738421 -231925932 + L2 LINE L2 2447 2664 -650 1617 162 7 45 chr1 10738421 10738729 -231925624 + AluJb SINE Alu 1 296 -16 694 265 158 56 chr1 10738729 10738896 -231925457 + L2 LINE L2 2664 2899 -415 838 278 62 0 chr1 10739508 10739735 -231924618 - MIR SINE MIR -17 245 5 2603 225 82 39 chr1 10739747 10740537 -231923816 - L1MC4 LINE L1 0 8042 7219 532 281 89 37 chr1 10740653 10740899 -231923454 + MIR SINE MIR 3 261 -1 27 0 0 0 chr1 10743322 10743349 -231921004 + AT_rich Low_complexity Low_complexity 1 27 0 563 273 33 49 chr1 10744689 10744751 -231919602 - MER5A DNA MER1_type -9 180 118 1895 118 4 4 chr1 10744751 10745022 -231919331 + AluY SINE Alu 3 273 -38 563 273 33 49 chr1 10745022 10745142 -231919211 - MER5A DNA MER1_type -71 118 1 396 288 132 27 chr1 10746237 10746494 -231917859 - L2 LINE L2 -39 3274 2991 451 322 87 80 chr1 10747536 10747756 -231916597 + L2 LINE L2 2507 2724 -589 1528 154 0 17 chr1 10747756 10747996 -231916357 + AluJb SINE Alu 1 236 -76 451 322 87 80 chr1 10747996 10748357 -231915996 + L2 LINE L2 2724 3091 -222 318 216 148 0 chr1 10748428 10748516 -231915837 + MLT1I LTR MaLR 71 171 -238 204 40 0 0 chr1 10748762 10748787 -231915566 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2016 125 0 0 chr1 10748799 10749071 -231915282 - AluSx SINE Alu -40 272 1 641 227 19 13 chr1 10749082 10749236 -231915117 + L2 LINE L2 3159 3313 0 1906 139 11 7 chr1 10750059 10750346 -231914007 - AluJb SINE Alu -24 288 1 291 213 172 16 chr1 10751103 10751225 -231913128 + MLT1L LTR MaLR 475 615 0 180 200 0 0 chr1 10751279 10751319 -231913034 + (CA)n Simple_repeat Simple_repeat 1 40 0 2013 116 28 7 chr1 10751382 10751666 -231912687 + AluSc SINE Alu 18 307 -2 311 287 70 26 chr1 10751845 10751960 -231912393 - MIR SINE MIR -130 132 13 714 276 89 0 chr1 10752145 10752348 -231912005 - MIR SINE MIR 0 262 42 329 335 6 0 chr1 10752591 10752770 -231911583 + (TG)n Simple_repeat Simple_repeat 1 180 0 525 274 55 0 chr1 10753164 10753310 -231911043 - MIR SINE MIR -78 184 31 475 271 133 0 chr1 10753828 10754009 -231910344 + MIR SINE MIR 36 240 -22 673 291 18 18 chr1 10754225 10754445 -231909908 + MIR SINE MIR 9 228 -34 204 214 0 0 chr1 10754985 10755041 -231909312 + GA-rich Low_complexity Low_complexity 2 57 0 346 295 179 0 chr1 10755214 10755404 -231908949 + MIR SINE MIR 33 256 -6 201 163 61 0 chr1 10756253 10756302 -231908051 + (CATA)n Simple_repeat Simple_repeat 2 53 0 360 211 14 0 chr1 10756304 10756375 -231907978 + MER6B DNA MER2_type 4 75 -201 1559 110 9 0 chr1 10756375 10756594 -231907759 - THE1C LTR MaLR 0 375 155 30627 115 11 10 chr1 10756606 10761040 -231903313 + L1P LINE L1 11 4452 -1694 249 304 0 0 chr1 10761061 10761130 -231903223 - MLT1J LTR MaLR -333 178 110 280 225 297 0 chr1 10761848 10761959 -231902394 - MIR SINE MIR 0 262 119 2055 171 17 0 chr1 10762009 10762355 -231901998 + MLT1B LTR MaLR 39 390 0 730 251 18 6 chr1 10762623 10762794 -231901559 - MER45A DNA AcHobo 0 178 6 461 288 104 22 chr1 10763144 10763366 -231900987 - MIR SINE MIR 0 262 23 509 326 73 23 chr1 10763686 10764098 -231900255 + L2 LINE L2 2600 3034 -238 4310 168 25 56 chr1 10764115 10765012 -231899341 - L1MB7 LINE L1 -7 6177 5309 433 172 194 0 chr1 10766467 10766560 -231897793 - MER81 DNA DNA -2 112 2 929 241 37 17 chr1 10767407 10767648 -231896705 + MIR SINE MIR 17 262 0 2362 157 34 42 chr1 10767681 10768023 -231896330 - MLT1C LTR MaLR 0 467 129 2341 82 0 28 chr1 10768023 10768341 -231896012 - AluY SINE Alu -2 309 1 2362 157 34 42 chr1 10768341 10768469 -231895884 - MLT1C LTR MaLR -338 129 1 326 290 56 9 chr1 10768623 10768730 -231895623 + L2 LINE L2 3202 3313 0 223 286 65 0 chr1 10768728 10768805 -231895548 - MIR SINE MIR -61 201 120 * 470 232 60 20 chr1 10769263 10769414 -231894939 + Charlie2 DNA MER1_type 2663 2819 -43 1108 228 45 62 chr1 10769422 10769832 -231894521 + L1MC5 LINE L1 7246 7648 -313 2287 104 3 0 chr1 10769832 10770130 -231894223 + AluSx SINE Alu 1 299 -13 1108 228 45 62 chr1 10770130 10770202 -231894151 + L1MC5 LINE L1 7648 7720 -241 1306 76 0 0 chr1 10770231 10770389 -231893964 - AluSq SINE Alu -10 303 146 2413 94 3 0 chr1 10770730 10771038 -231893315 - AluSc SINE Alu 0 309 1 864 224 53 12 chr1 10771076 10771321 -231893032 + L1MC5 LINE L1 7662 7916 -45 734 242 93 73 chr1 10771337 10771592 -231892761 + L1M4 LINE L1 3599 3847 -2299 1967 191 78 38 chr1 10771592 10772041 -231892312 + MLT1C LTR MaLR 1 467 0 734 242 93 73 chr1 10772041 10772128 -231892225 + L1M4 LINE L1 3847 3953 -2193 270 56 0 0 chr1 10772128 10772164 -231892189 + (ATG)n Simple_repeat Simple_repeat 3 38 0 734 242 93 73 chr1 10772164 10772217 -231892136 + L1M4 LINE L1 3953 4003 -2143 378 0 0 0 chr1 10772219 10772261 -231892092 + (CA)n Simple_repeat Simple_repeat 2 43 0 858 242 33 15 chr1 10772654 10772927 -231891426 + L1ME3A LINE L1 5685 5962 -208 423 0 0 0 chr1 10772930 10772977 -231891376 + (CA)n Simple_repeat Simple_repeat 2 48 0 1013 191 0 6 chr1 10773007 10773175 -231891178 - MER5A DNA MER1_type -22 167 1 307 278 17 43 chr1 10773214 10773329 -231891024 + L1ME3A LINE L1 5971 6082 -88 26 50 0 0 chr1 10773387 10773427 -231890926 + AT_rich Low_complexity Low_complexity 1 40 0 405 257 79 40 chr1 10773631 10773783 -231890570 - MIR SINE MIR -93 169 12 280 328 46 17 chr1 10773786 10773968 -231890385 + MER5B DNA MER1_type 1 176 -2 301 284 39 29 chr1 10775379 10775481 -231888872 + MIR3 SINE MIR 91 193 -15 2349 97 0 3 chr1 10775535 10775845 -231888508 - AluSg SINE Alu -1 309 1 347 209 90 122 chr1 10776063 10776313 -231888040 + MLT1H LTR MaLR 192 549 0 194 288 110 0 chr1 10776398 10776471 -231887882 - MIR SINE MIR -65 197 117 1979 127 68 6 chr1 10777105 10777443 -231886910 + MLT1B LTR MaLR 25 383 -7 495 242 87 37 chr1 10777841 10778002 -231886351 - MIR SINE MIR -6 256 88 299 254 15 0 chr1 10778188 10778255 -231886098 + MLT1K LTR MaLR 180 247 -341 849 121 38 0 chr1 10778257 10778389 -231885964 + MSTB2 LTR MaLR 1 137 -320 572 218 17 16 chr1 10778394 10778526 -231885827 + MSTB2 LTR MaLR 264 457 0 1154 163 40 26 chr1 10779075 10779302 -231885051 - MER106A DNA MER1_type -1 235 6 2035 117 29 0 chr1 10780266 10780547 -231883806 - AluSx SINE Alu -8 304 16 1250 137 5 46 chr1 10780624 10780762 -231883591 + MER2 DNA MER2_type 2 129 -216 1443 110 64 14 chr1 10780762 10780980 -231883373 - MER30 DNA MER1_type 0 230 2 1250 137 5 46 chr1 10780980 10781060 -231883293 + MER2 DNA MER2_type 129 211 -134 2717 171 42 47 chr1 10781101 10781167 -231883186 + MER6A DNA MER2_type 2 67 -798 1541 62 0 16 chr1 10781167 10781361 -231882992 + L1PA4 LINE L1 5965 6155 0 2717 171 42 47 chr1 10781361 10781843 -231882510 + MER6A DNA MER2_type 67 547 -58 216 228 0 0 chr1 10782127 10782184 -231882169 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 2187 243 70 25 chr1 10783282 10783498 -231880855 + MLT1E2 LTR MaLR 20 225 -401 2012 195 49 21 chr1 10783498 10783883 -231880470 - MSTD LTR MaLR 0 396 1 2187 243 70 25 chr1 10783883 10784238 -231880115 + MLT1E2 LTR MaLR 225 617 -9 838 191 15 0 chr1 10785983 10786114 -231878239 - AluJo SINE Alu -177 135 3 514 278 81 5 chr1 10786915 10787116 -231877237 - MIR SINE MIR -26 236 21 660 246 89 11 chr1 10787303 10787533 -231876820 + MIR SINE MIR 3 241 -21 1073 205 263 18 chr1 10787726 10788117 -231876236 + L2 LINE L2 2827 3313 0 300 279 119 40 chr1 10789342 10789543 -231874810 - MIR SINE MIR -6 256 40 2331 68 0 61 chr1 10789718 10790044 -231874309 + AluY SINE Alu 6 311 0 240 111 0 0 chr1 10790252 10790288 -231874065 + (T)n Simple_repeat Simple_repeat 1 36 0 2215 8 0 0 chr1 10790292 10790537 -231873816 - L1HS LINE L1 -1 6154 5910 * 4159 35 0 3 chr1 10790534 10791122 -231873231 + L1M4 LINE L1 4911 5491 -693 371 273 38 30 chr1 10791475 10791607 -231872746 - MIR SINE MIR -57 205 73 314 203 0 55 chr1 10791723 10791851 -231872502 + CT-rich Low_complexity Low_complexity 2 122 0 533 293 89 22 chr1 10792344 10792569 -231871784 + MIR SINE MIR 2 241 -21 1821 156 71 73 chr1 10792855 10793098 -231871255 + MSTA LTR MaLR 1 244 -184 2470 87 3 0 chr1 10793098 10793407 -231870946 - AluSg SINE Alu 0 310 1 1821 156 71 73 chr1 10793407 10793587 -231870766 + MSTA LTR MaLR 244 423 -5 281 200 27 67 chr1 10795007 10795082 -231869271 + MLT1J2 LTR MaLR 1 72 -378 380 273 10 0 chr1 10795124 10795223 -231869130 - L1ME LINE L1 -504 5662 5563 827 284 78 21 chr1 10795240 10795522 -231868831 + MLT1J2 LTR MaLR 151 448 -2 740 321 95 8 chr1 10796570 10796959 -231867394 + MLT1K LTR MaLR 124 546 -42 2063 243 89 16 chr1 10797123 10797671 -231866682 - MLT1G LTR MaLR -2 588 1 271 339 116 46 chr1 10797703 10798030 -231866323 + L2 LINE L2 2918 3267 -5 332 312 83 0 chr1 10798033 10798142 -231866211 - MIR3 SINE MIR -53 155 38 648 130 3 3 chr1 10798771 10798883 -231865470 + L1PA8A LINE L1 5829 5940 -191 415 287 7 26 chr1 10799388 10799584 -231864769 + L1ME3A LINE L1 5449 5641 -529 274 307 25 25 chr1 10799593 10799756 -231864597 + L1ME3A LINE L1 5800 5962 -208 3990 102 32 4 chr1 10800140 10800678 -231863675 - L1PA10 LINE L1 -2 6166 5614 988 265 80 43 chr1 10800680 10801117 -231863236 + L1ME4a LINE L1 5436 5888 -233 1715 131 0 15 chr1 10801256 10801524 -231862829 + AluSx SINE Alu 43 306 -6 794 228 234 39 chr1 10801536 10802048 -231862305 + L2 LINE L2 2701 3312 -1 471 139 101 0 chr1 10802818 10802897 -231861456 - L1MB1 LINE L1 0 6168 6082 330 185 185 0 chr1 10803912 10803993 -231860360 + L2 LINE L2 3207 3302 -11 300 297 73 42 chr1 10804752 10804917 -231859436 + MIR SINE MIR 84 253 -9 260 260 0 27 chr1 10805181 10805254 -231859099 + MIR SINE MIR 22 92 -116 331 295 16 111 chr1 10805396 10805586 -231858767 - MIR SINE MIR -48 214 43 697 179 99 94 chr1 10806485 10806686 -231857667 - MER20 DNA MER1_type -7 212 11 2479 85 3 0 chr1 10806720 10807027 -231857326 + AluSp SINE Alu 2 309 -4 233 277 24 24 chr1 10808238 10808321 -231856032 - MIR SINE MIR -21 241 159 876 97 8 0 chr1 10808321 10808445 -231855908 + L1MB8 LINE L1 6054 6178 0 267 309 0 0 chr1 10808471 10808568 -231855785 + L1M4 LINE L1 2994 3090 -3056 198 261 0 0 chr1 10808770 10808816 -231855537 + L2 LINE L2 3266 3311 -2 1557 188 0 20 chr1 10809545 10809843 -231854510 - AluJb SINE Alu -20 292 1 230 326 69 0 chr1 10810697 10810841 -231853512 - L1ME LINE L1 -303 5818 5665 * 1975 175 72 22 chr1 10810837 10811293 -231853060 - L1MB7 LINE L1 0 6184 5706 1475 189 18 4 chr1 10811274 10811554 -231852799 - L1M4 LINE L1 -368 5816 5533 * 256 266 65 65 chr1 10811551 10811690 -231852663 - L1MB7 LINE L1 -435 5686 5548 * 6490 38 0 7 chr1 10811920 10812652 -231851701 - L1PA7 LINE L1 -8 6146 5420 239 274 12 122 chr1 10812938 10813044 -231851309 - MIR SINE MIR -6 256 173 1824 164 7 16 chr1 10813044 10813348 -231851005 + AluJo SINE Alu 1 301 -11 239 274 12 122 chr1 10813348 10813405 -231850948 - MIR SINE MIR -89 173 111 1454 242 103 24 chr1 10814325 10814742 -231849611 + MLT1J2 LTR MaLR 1 450 0 278 362 80 7 chr1 10814833 10814971 -231849382 - MIR3 SINE MIR -42 166 19 449 312 25 6 chr1 10815397 10815554 -231848799 - MIR SINE MIR -14 248 89 313 248 76 109 chr1 10815917 10816155 -231848198 + MIR SINE MIR 21 250 -12 989 194 54 0 chr1 10816316 10816502 -231847851 - MER3 DNA MER1_type -10 199 4 386 329 72 6 chr1 10818081 10818248 -231846105 + MIR SINE MIR 59 236 -26 237 210 0 0 chr1 10818270 10818332 -231846021 + (CAT)n Simple_repeat Simple_repeat 1 62 0 314 263 40 40 chr1 10818471 10818570 -231845783 + MER20B DNA MER1_type 95 193 -590 813 239 162 42 chr1 10818743 10818874 -231845479 + MER20B DNA MER1_type 263 377 -406 1181 256 111 55 chr1 10818874 10819398 -231844955 + MLT1H1 LTR MaLR 1 553 -2 813 239 162 42 chr1 10819398 10819550 -231844803 + MER20B DNA MER1_type 377 580 -203 5950 152 41 35 chr1 10819550 10821614 -231842739 - L1PA15 LINE L1 -4 6161 4087 689 225 5 42 chr1 10821614 10821827 -231842526 + MER20B DNA MER1_type 558 762 -21 219 170 0 0 chr1 10823658 10823705 -231840648 + (ATG)n Simple_repeat Simple_repeat 2 48 0 219 300 33 0 chr1 10825263 10825323 -231839030 + L2 LINE L2 3167 3228 -44 184 286 214 10 chr1 10825539 10825637 -231838716 + L2 LINE L2 3150 3267 -5 443 313 37 28 chr1 10826199 10826416 -231837937 - L2 LINE L2 -840 2474 2256 185 379 11 23 chr1 10826823 10826910 -231837443 + L2 LINE L2 2998 3083 -189 276 281 32 74 chr1 10827150 10827367 -231836986 - L1ME3A LINE L1 -1 6169 5962 2078 211 56 59 chr1 10827443 10828411 -231835942 - L1MC5 LINE L1 -440 7521 6478 799 328 75 22 chr1 10828566 10829112 -231835241 - HAL1b LINE L1 -710 638 64 1082 210 122 18 chr1 10829321 10829641 -231834712 - MSTD LTR MaLR 0 396 1 2029 129 10 3 chr1 10829693 10829987 -231834366 - AluSq SINE Alu -16 297 2 316 296 141 21 chr1 10830811 10830953 -231833400 + MIR SINE MIR 2 160 -102 231 304 87 22 chr1 10831691 10831783 -231832570 + L2 LINE L2 3137 3234 -38 252 289 248 13 chr1 10831820 10831969 -231832384 + L2 LINE L2 2356 2539 -775 407 280 47 61 chr1 10832179 10832393 -231831960 - L2 LINE L2 0 3313 3103 2075 277 130 18 chr1 10832408 10833239 -231831114 + L2 LINE L2 2139 3059 -254 585 231 123 51 chr1 10834818 10835013 -231829340 + MER63A DNA MER1_type 2 210 0 2364 93 0 13 chr1 10835095 10835408 -231828945 + AluY SINE Alu 1 309 -2 2046 182 46 57 chr1 10835531 10836054 -231828299 + Charlie1b DNA MER1_type 1 517 -6 3025 82 0 3 chr1 10836179 10836544 -231827809 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr1 10837063 10837084 -231827269 + AT_rich Low_complexity Low_complexity 1 21 0 394 284 35 26 chr1 10838063 10838179 -231826174 + L2 LINE L2 3137 3253 -19 192 200 0 0 chr1 10838180 10838225 -231826128 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 637 214 205 30 chr1 10838915 10839083 -231825270 - MER96B DNA MER1_type? -3 414 192 189 0 0 0 chr1 10839083 10839104 -231825249 + (TGAG)n Simple_repeat Simple_repeat 4 24 0 637 214 205 30 chr1 10839104 10839169 -231825184 - MER96B DNA MER1_type? -225 192 140 2314 125 0 0 chr1 10839355 10839666 -231824687 + AluSq SINE Alu 1 311 -2 547 298 34 14 chr1 10839671 10839879 -231824474 + L1ME4a LINE L1 5653 5864 -257 31 68 0 0 chr1 10839971 10840030 -231824323 + AT_rich Low_complexity Low_complexity 1 59 0 961 50 0 17 chr1 10840590 10840710 -231823643 - L1PA4 LINE L1 -7 6148 6031 2134 110 0 10 chr1 10840712 10841004 -231823349 - AluSc SINE Alu -8 301 13 667 261 144 62 chr1 10841326 10841728 -231822625 + MLT1J1 LTR MaLR 1 435 -11 191 167 28 0 chr1 10843330 10843366 -231820987 - L2 LINE L2 -15 3298 3262 1847 97 4 4 chr1 10843596 10843844 -231820509 - AluSq SINE Alu -25 288 41 233 302 31 10 chr1 10844020 10844116 -231820237 - MIR SINE MIR -90 118 21 530 276 105 19 chr1 10844400 10844610 -231819743 + MIR SINE MIR 18 245 -17 2345 85 3 0 chr1 10844651 10844944 -231819409 + AluSp SINE Alu 1 294 -19 24 32 0 0 chr1 10845740 10845771 -231818582 + AT_rich Low_complexity Low_complexity 1 31 0 375 263 51 28 chr1 10846234 10846503 -231817850 - L1ME4a LINE L1 -50 6071 5710 218 328 95 9 chr1 10846875 10846991 -231817362 - L3b LINE CR1 -149 1434 1309 244 325 80 28 chr1 10847126 10847375 -231816978 - L2 LINE L2 -204 3109 2848 928 274 21 4 chr1 10847660 10847894 -231816459 + MIR SINE MIR 9 246 -16 1997 167 0 0 chr1 10847996 10848301 -231816052 - AluSx SINE Alu -7 305 1 180 97 0 0 chr1 10848559 10848590 -231815763 + (CTA)n Simple_repeat Simple_repeat 2 32 0 2142 135 3 0 chr1 10848901 10849212 -231815141 - AluSx SINE Alu 0 312 1 201 162 0 0 chr1 10849212 10849249 -231815104 + T-rich Low_complexity Low_complexity 1 37 0 2598 301 117 24 chr1 10849280 10850874 -231813479 + L2 LINE L2 1562 3313 0 267 209 30 30 chr1 10850892 10850959 -231813394 - HAL1 LINE L1 -1485 1022 956 288 0 0 0 chr1 10851075 10851107 -231813246 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr1 10851473 10851495 -231812858 + AT_rich Low_complexity Low_complexity 1 22 0 1769 183 63 82 chr1 10853000 10853325 -231811028 - MLT1C LTR MaLR 0 467 152 2183 125 82 17 chr1 10853325 10853677 -231810676 - THE1C LTR MaLR 0 375 1 1769 183 63 82 chr1 10853677 10853827 -231810526 - MLT1C LTR MaLR -315 152 1 333 260 0 0 chr1 10854343 10854420 -231809933 - MLT1K LTR MaLR -2 586 510 487 259 56 7 chr1 10854855 10854998 -231809355 + LTR67 LTR ERVL 408 557 0 281 366 158 14 chr1 10855025 10855530 -231808823 + L2 LINE L2 2224 2801 -513 384 239 23 0 chr1 10855565 10855653 -231808700 + MLT1J2 LTR MaLR 5 94 -356 226 227 0 0 chr1 10855699 10855743 -231808610 - MLT1H LTR MaLR 0 549 506 1241 261 86 0 chr1 10855842 10856168 -231808185 - MLT1H LTR MaLR -195 354 1 644 274 48 0 chr1 10856171 10856339 -231808014 + MIR SINE MIR 72 247 -15 442 232 155 82 chr1 10856860 10857067 -231807286 + MLT1H LTR MaLR 129 350 -199 245 191 79 0 chr1 10857161 10857224 -231807129 + MLT1H LTR MaLR 482 549 0 387 0 0 0 chr1 10858381 10858424 -231805929 + (CA)n Simple_repeat Simple_repeat 1 43 0 329 330 0 8 chr1 10858578 10858696 -231805657 + L2 LINE L2 3136 3252 -20 1053 201 0 16 chr1 10858835 10859024 -231805329 - MER20 DNA MER1_type -1 218 33 254 221 63 63 chr1 10860195 10860290 -231804063 + LTR67 LTR ERVL 459 553 -4 221 200 36 0 chr1 10862178 10862233 -231802120 + GA-rich Low_complexity Low_complexity 4 60 0 327 341 17 12 chr1 10862282 10862455 -231801898 + GA-rich Low_complexity Low_complexity 3 176 0 357 336 8 16 chr1 10866354 10866476 -231797877 - L2 LINE L2 -12 3260 3140 456 231 35 106 chr1 10866725 10866924 -231797429 + L2 LINE L2 3125 3309 -4 2346 277 81 55 chr1 10867109 10868326 -231796027 + L1MEc LINE L1 34 1293 -5103 2259 111 61 25 chr1 10868326 10868688 -231795665 - THE1C LTR MaLR 0 375 1 2346 277 81 55 chr1 10868688 10868867 -231795486 + L1MEc LINE L1 1293 1466 -4930 1673 259 43 42 chr1 10868942 10869452 -231794901 + L1MEc LINE L1 1463 1976 -4420 2175 106 0 0 chr1 10869452 10869734 -231794619 - AluSg SINE Alu -21 289 8 1673 259 43 42 chr1 10869734 10869848 -231794505 + L1MEc LINE L1 1976 2088 -4308 2431 76 0 0 chr1 10871216 10871519 -231792834 + AluY SINE Alu 1 303 -8 394 322 0 0 chr1 10871601 10871722 -231792631 + MLT1I LTR MaLR 57 177 -232 266 314 29 20 chr1 10871752 10871854 -231792499 + MIR SINE MIR 158 260 -2 2028 190 71 29 chr1 10871943 10872464 -231791889 + LTR55 LTR ERV 1 543 -5 913 257 81 37 chr1 10872655 10872927 -231791426 + MLT1K LTR MaLR 3 286 -302 288 266 44 80 chr1 10872976 10873089 -231791264 - MLT1K LTR MaLR -243 345 237 813 263 108 32 chr1 10873098 10873376 -231790977 + MLT1K LTR MaLR 290 588 0 1168 227 49 166 chr1 10873446 10874062 -231790291 + MLT1H1 LTR MaLR 1 588 -7 314 266 9 64 chr1 10874099 10874208 -231790145 + L2 LINE L2 3197 3299 -14 3272 158 71 34 chr1 10875174 10875607 -231788746 + L1MB5 LINE L1 5501 5967 -207 2014 124 28 0 chr1 10875607 10875890 -231788463 + AluSg SINE Alu 1 291 -19 3272 158 71 34 chr1 10875890 10876100 -231788253 + L1MB5 LINE L1 5967 6168 -6 542 304 36 32 chr1 10876660 10876880 -231787473 + MIR SINE MIR 14 234 -28 210 143 0 0 chr1 10877295 10877330 -231787023 + (GGGGA)n Simple_repeat Simple_repeat 2 36 0 241 240 27 13 chr1 10877455 10877530 -231786823 + MLT1K LTR MaLR 512 587 -1 390 294 55 12 chr1 10877701 10877864 -231786489 - MIR SINE MIR -13 249 80 1956 145 10 0 chr1 10878875 10879178 -231785175 - AluSq SINE Alu -7 306 1 363 239 61 1 chr1 10880136 10880245 -231784108 - MIR SINE MIR -61 147 38 2012 113 8 0 chr1 10880282 10880570 -231783783 - AluSx SINE Alu 0 306 17 2375 100 6 0 chr1 10881780 10882091 -231782262 + AluSp SINE Alu 1 313 0 1323 253 104 10 chr1 10882094 10882133 -231782220 + MLT1F LTR MaLR 111 145 -397 246 32 0 0 chr1 10882133 10882164 -231782189 + (CA)n Simple_repeat Simple_repeat 2 32 0 1323 253 104 10 chr1 10882164 10882519 -231781834 + MLT1F LTR MaLR 145 542 0 392 266 28 64 chr1 10882519 10882737 -231781616 + MLT1F-int LTR MaLR 1 210 -1161 4461 140 38 4 chr1 10882838 10883532 -231780821 + MER50 LTR ERV1 1 717 -17 537 305 19 0 chr1 10883539 10883693 -231780660 + MLT1F-int LTR MaLR 445 601 -770 2457 93 0 0 chr1 10883775 10884086 -231780267 + AluY SINE Alu 1 311 0 416 337 44 77 chr1 10884212 10884865 -231779488 + MLT1F-int LTR MaLR 699 1330 -41 2309 250 17 11 chr1 10884898 10885430 -231778923 + MLT1F LTR MaLR 6 540 -2 21192 159 23 15 chr1 10885930 10888544 -231775809 + L1MA2 LINE L1 16 2607 -5116 2013 130 49 32 chr1 10888544 10888913 -231775440 + THE1C LTR MaLR 1 375 0 21192 159 23 15 chr1 10888913 10890682 -231773671 + L1MA2 LINE L1 2607 4360 -3363 2049 155 0 0 chr1 10890682 10890979 -231773374 + AluSx SINE Alu 14 310 -2 21192 159 23 15 chr1 10890979 10891622 -231772731 + L1MA2 LINE L1 4360 4996 -2727 393 22 0 0 chr1 10891622 10891668 -231772685 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 21192 159 23 15 chr1 10891668 10892817 -231771536 + L1MA2 LINE L1 4996 6134 -1589 2484 81 0 10 chr1 10892817 10893125 -231771228 - AluSp SINE Alu -7 306 2 21192 159 23 15 chr1 10893125 10894586 -231769767 + L1MA2 LINE L1 6134 7723 0 254 236 118 9 chr1 10895658 10895768 -231768585 + L1ME4a LINE L1 5993 6114 -7 284 250 13 0 chr1 10896437 10896513 -231767840 + MIR SINE MIR 77 153 -109 2212 111 6 19 chr1 10897212 10897527 -231766826 + AluY SINE Alu 1 311 0 324 103 0 0 chr1 10897527 10897585 -231766768 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 639 273 84 72 chr1 10897790 10898292 -231766061 + HAL1 LINE L1 681 1188 -1319 1862 121 81 4 chr1 10898406 10898679 -231765674 - AluJb SINE Alu -16 296 3 323 278 32 137 chr1 10898727 10898801 -231765552 - MIR SINE MIR -4 258 178 2432 82 0 13 chr1 10898801 10899107 -231765246 - AluSc SINE Alu -7 302 1 323 278 32 137 chr1 10899107 10899309 -231765044 - MIR SINE MIR -84 178 11 2094 169 44 46 chr1 10899310 10899743 -231764610 - Tigger2a DNA MER2_type 0 434 3 561 279 103 69 chr1 10899778 10900052 -231764301 + HAL1 LINE L1 1401 1701 -806 2572 83 0 3 chr1 10900052 10900366 -231763987 - AluSq SINE Alu 0 313 1 561 279 103 69 chr1 10900366 10900596 -231763757 + HAL1 LINE L1 1701 1922 -585 2063 124 39 0 chr1 10900749 10901032 -231763321 + AluSx SINE Alu 1 294 -18 189 94 0 0 chr1 10901133 10901165 -231763188 + (TG)n Simple_repeat Simple_repeat 2 33 0 2021 137 3 7 chr1 10901166 10901458 -231762895 - AluJo SINE Alu -21 291 1 2116 141 64 38 chr1 10901610 10902029 -231762324 + MSTB1 LTR MaLR 3 432 0 948 109 0 0 chr1 10902030 10902158 -231762195 + FLAM_C SINE Alu 1 128 -5 1609 269 69 64 chr1 10902220 10902601 -231761752 + HAL1 LINE L1 1644 2022 -485 1878 183 0 0 chr1 10902601 10902902 -231761451 + AluJb SINE Alu 1 301 -11 1609 269 69 64 chr1 10902902 10903380 -231760973 + HAL1 LINE L1 2022 2507 0 213 322 0 0 chr1 10904496 10904555 -231759798 + GA-rich Low_complexity Low_complexity 3 61 0 21 0 0 0 chr1 10905365 10905386 -231758967 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 10906207 10906233 -231758120 + AT_rich Low_complexity Low_complexity 1 26 0 709 310 8 25 chr1 10906242 10906484 -231757869 - MIR SINE MIR -21 241 4 494 31 16 0 chr1 10906627 10906691 -231757662 + (CA)n Simple_repeat Simple_repeat 2 66 0 250 313 0 15 chr1 10906772 10906839 -231757514 - MIR3 SINE MIR -31 177 112 683 292 64 11 chr1 10908084 10908495 -231755858 + MLT1L LTR MaLR 144 608 -7 234 0 0 0 chr1 10908510 10908536 -231755817 + (CA)n Simple_repeat Simple_repeat 2 27 0 200 300 57 0 chr1 10908570 10908640 -231755713 - MIR SINE MIR -72 190 117 1362 82 0 0 chr1 10908747 10908917 -231755436 + AluSp SINE Alu 138 307 -6 742 332 4 0 chr1 10908922 10909148 -231755205 - MIR SINE MIR -11 251 25 339 289 19 64 chr1 10910177 10910333 -231754020 - MIR SINE MIR -30 232 84 577 90 0 0 chr1 10911494 10911572 -231752781 + MADE1 DNA Mariner 3 80 0 405 141 0 0 chr1 10911578 10911649 -231752704 + (TG)n Simple_repeat Simple_repeat 1 71 0 324 300 45 0 chr1 10912096 10912206 -231752147 + MIR SINE MIR 78 192 -70 255 284 101 18 chr1 10912990 10913099 -231751254 - MLT1K LTR MaLR -469 119 2 2238 97 0 0 chr1 10913178 10913532 -231750821 - AluSc SINE Alu 0 354 1 348 298 12 37 chr1 10913804 10913965 -231750388 + L3 LINE CR1 1212 1368 -209 407 328 55 16 chr1 10913982 10914165 -231750188 + MLT1K LTR MaLR 11 200 -388 486 320 207 4 chr1 10914366 10914622 -231749731 + LTR16C LTR ERVL 158 465 -26 516 258 72 53 chr1 10914783 10914992 -231749361 + MLT1K LTR MaLR 375 587 -1 303 330 5 91 chr1 10914996 10915205 -231749148 + L3 LINE CR1 1370 1560 -17 1846 161 151 19 chr1 10915309 10915687 -231748666 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr1 10916180 10916204 -231748149 + AT_rich Low_complexity Low_complexity 1 24 0 191 114 23 0 chr1 10916819 10916863 -231747490 + CT-rich Low_complexity Low_complexity 1 45 0 1800 172 30 57 chr1 10917869 10918270 -231746083 + MLT1B LTR MaLR 1 390 0 2263 113 0 0 chr1 10919495 10919795 -231744558 - AluSx SINE Alu -12 300 1 332 278 12 87 chr1 10919864 10920066 -231744287 + MIR SINE MIR 19 192 -70 191 269 29 67 chr1 10920126 10920230 -231744123 + MIR SINE MIR 44 143 -65 192 324 19 51 chr1 10920517 10920733 -231743620 + L2 LINE L2 2705 2913 -401 856 247 108 53 chr1 10920869 10921306 -231743047 - MLT1C LTR MaLR 0 467 7 790 167 0 69 chr1 10921343 10921517 -231742836 + MER20 DNA MER1_type 58 219 0 589 186 20 0 chr1 10922283 10922385 -231741968 + U6 snRNA snRNA 3 106 -1 209 347 81 16 chr1 10924046 10924170 -231740183 + MIR SINE MIR 73 204 -58 1023 250 176 34 chr1 10924310 10925047 -231739306 + L2 LINE L2 2432 3297 -16 522 258 15 0 chr1 10925073 10925205 -231739148 + MIR SINE MIR 9 142 -120 528 310 81 22 chr1 10925518 10925841 -231738512 - MLT1K LTR MaLR -162 426 85 3072 85 19 5 chr1 10926133 10926555 -231737798 + MSTA LTR MaLR 1 428 0 457 239 170 0 chr1 10926606 10926765 -231737588 + MIR SINE MIR 77 262 0 233 29 0 29 chr1 10927560 10927595 -231736758 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 335 331 29 14 chr1 10927797 10927936 -231736417 + MIR3 SINE MIR 60 200 -8 344 281 83 46 chr1 10928759 10928976 -231735377 - MIR SINE MIR -6 256 32 1487 204 28 37 chr1 10929005 10929074 -231735279 + MLT1A2 LTR MaLR 25 93 -281 1951 149 98 15 chr1 10929074 10929410 -231734943 - THE1B LTR MaLR 0 364 1 11697 102 6 1 chr1 10929410 10930982 -231733371 - THE1B-int LTR MaLR 0 1580 1 2048 139 106 6 chr1 10930982 10931313 -231733040 - THE1B LTR MaLR 0 364 1 1487 204 28 37 chr1 10931313 10931594 -231732759 + MLT1A2 LTR MaLR 90 374 0 258 323 131 8 chr1 10931724 10931854 -231732499 + MIR SINE MIR 109 254 -8 410 290 14 28 chr1 10932912 10933057 -231731296 + MIR SINE MIR 8 150 -112 205 246 18 0 chr1 10933714 10933771 -231730582 - L2 LINE L2 -16 3256 3199 338 167 218 19 chr1 10933864 10933986 -231730367 - MLT1E1 LTR MaLR -335 319 118 * 343 229 0 73 chr1 10933970 10934079 -231730274 - MLT1E1 LTR MaLR -497 157 57 180 272 163 11 chr1 10934293 10934385 -231729968 - L2 LINE L2 -46 3267 3162 2381 98 0 0 chr1 10934581 10934886 -231729467 + AluSg SINE Alu 1 305 -5 260 382 10 0 chr1 10935417 10935519 -231728834 + L2 LINE L2 3170 3272 0 1213 181 45 67 chr1 10935625 10935956 -231728397 - MER33 DNA MER1_type 0 324 1 444 331 58 58 chr1 10938151 10938562 -231725791 - L2 LINE L2 -5 3267 2857 273 246 103 48 chr1 10938626 10938752 -231725601 - MIR3 SINE MIR -35 173 41 272 68 0 23 chr1 10939211 10939255 -231725098 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 842 112 0 41 chr1 10939519 10939688 -231724665 + (GGGA)n Simple_repeat Simple_repeat 3 164 0 205 156 0 0 chr1 10940545 10940577 -231723776 + (TTG)n Simple_repeat Simple_repeat 2 33 0 215 275 33 22 chr1 10941195 10941286 -231723067 + L2 LINE L2 2911 3002 -270 1692 168 89 77 chr1 10942732 10943214 -231721139 + MLT1D LTR MaLR 1 488 -17 1564 171 65 78 chr1 10943214 10943398 -231720955 + MLT1B LTR MaLR 1 186 -204 1920 134 7 39 chr1 10943398 10943704 -231720649 + AluSx SINE Alu 1 296 -16 1564 171 65 78 chr1 10943704 10943904 -231720449 + MLT1B LTR MaLR 186 380 -10 305 298 57 66 chr1 10945132 10945360 -231718993 + MIR SINE MIR 30 255 -7 3131 181 12 7 chr1 10945375 10945495 -231718858 + MER68 LTR ERV1 1 119 -443 2188 111 62 31 chr1 10945495 10945848 -231718505 - THE1B LTR MaLR 0 364 1 3131 181 12 7 chr1 10945848 10946286 -231718067 + MER68 LTR ERV1 119 562 0 329 291 70 20 chr1 10946345 10946544 -231717809 - LTR33 LTR ERVL 0 521 313 242 225 0 14 chr1 10946642 10946705 -231717648 + GA-rich Low_complexity Low_complexity 3 66 -6 2535 152 72 77 chr1 10946705 10947319 -231717034 - LTR36 LTR ERV1 0 611 1 434 232 14 51 chr1 10948489 10948627 -231715726 + MIR SINE MIR 64 196 -66 313 214 112 11 chr1 10949155 10949244 -231715109 - MLT1J LTR MaLR -200 311 214 220 316 0 0 chr1 10949292 10949349 -231715004 + L2 LINE L2 2587 2643 -671 216 308 64 0 chr1 10949379 10949457 -231714896 + L2 LINE L2 2606 2688 -626 291 292 51 25 chr1 10949577 10949714 -231714639 + MER5A DNA MER1_type 13 163 -26 291 119 0 0 chr1 10949996 10950038 -231714315 + MIR SINE MIR 215 256 -6 32 57 0 0 chr1 10950413 10950466 -231713887 + AT_rich Low_complexity Low_complexity 1 53 0 394 153 42 0 chr1 10950548 10950620 -231713733 + MER116 DNA Mariner 2 76 -4 2503 230 60 5 chr1 10950667 10951220 -231713133 + MLT1G LTR MaLR 3 585 -5 446 214 104 35 chr1 10951391 10951564 -231712789 + MER20 DNA MER1_type 1 185 -34 623 299 45 37 chr1 10952010 10952365 -231711988 - L1MC4a LINE L1 -1927 5881 5524 2679 177 68 29 chr1 10952393 10952941 -231711412 + MER39 LTR ERV1 76 644 -63 236 310 0 0 chr1 10954000 10954087 -231710266 + L1MC4 LINE L1 6614 6700 -1342 33 43 0 0 chr1 10954146 10954193 -231710160 + AT_rich Low_complexity Low_complexity 1 47 0 2456 71 7 3 chr1 10954228 10954536 -231709817 + AluY SINE Alu 1 309 -2 1246 279 55 69 chr1 10955079 10955485 -231708868 + L1ME1 LINE L1 22 417 -5979 2435 83 7 0 chr1 10955485 10955787 -231708566 - AluSg SINE Alu -6 304 1 1246 279 55 69 chr1 10955787 10956004 -231708349 + L1ME1 LINE L1 417 636 -5760 3535 244 48 47 chr1 10956011 10957480 -231706873 + L1ME1 LINE L1 872 2342 -3873 727 151 32 8 chr1 10957480 10957606 -231706747 + L1MC1 LINE L1 6196 6324 -9 3535 244 48 47 chr1 10957606 10958448 -231705905 + L1ME1 LINE L1 2342 3182 -3033 * 5766 214 70 39 chr1 10958446 10960153 -231704200 + L1ME1 LINE L1 3495 5326 -909 1707 117 8 19 chr1 10960153 10960418 -231703935 + L1PA10 LINE L1 5895 6156 -12 5766 214 70 39 chr1 10960418 10961353 -231703000 + L1ME1 LINE L1 5326 6231 -4 329 254 0 9 chr1 10961636 10961731 -231702622 + (CATA)n Simple_repeat Simple_repeat 3 98 -13 1502 29 0 0 chr1 10961731 10961905 -231702448 - L1PA4 LINE L1 -5 6150 5977 329 254 0 9 chr1 10961905 10961919 -231702434 + (CATA)n Simple_repeat Simple_repeat 98 111 0 377 313 122 15 chr1 10962275 10962610 -231701743 + L2 LINE L2 2343 2713 -601 267 244 154 0 chr1 10962668 10962746 -231701607 + L2 LINE L2 3223 3312 -1 465 255 87 39 chr1 10963058 10963266 -231701087 - MIR SINE MIR -13 249 32 1520 56 17 0 chr1 10963526 10963705 -231700648 - AluY SINE Alu -129 182 1 1711 134 3 75 chr1 10964544 10964878 -231699475 + AluJb SINE Alu 1 312 0 901 241 14 5 chr1 10964969 10965176 -231699177 - MER58 DNA MER1_type -2196 224 16 225 208 19 0 chr1 10965974 10966027 -231698326 - MIR SINE MIR -54 208 155 1339 242 87 34 chr1 10966027 10966521 -231697832 + MER34B LTR ERV1 1 543 -13 797 185 22 0 chr1 10966521 10966656 -231697697 + MLT1A1 LTR MaLR 1 138 -227 2498 138 18 39 chr1 10966656 10966852 -231697501 + MSTB LTR MaLR 1 200 -226 3602 104 4 12 chr1 10966852 10967370 -231696983 + MER75 DNA T2_type 1 514 0 2498 138 18 39 chr1 10967370 10967608 -231696745 + MSTB LTR MaLR 200 426 0 1385 141 0 60 chr1 10967607 10967633 -231696720 + MLT1A1 LTR MaLR 133 159 -206 * 2288 97 7 3 chr1 10967633 10967931 -231696422 + AluSx SINE Alu 1 299 -13 1385 141 0 60 chr1 10967931 10968152 -231696201 + MLT1A1 LTR MaLR 159 365 0 280 304 0 0 chr1 10968172 10968251 -231696102 - MIR SINE MIR -104 158 80 205 313 16 16 chr1 10968246 10968310 -231696043 - L2 LINE L2 -10 3262 3199 * 1619 231 74 14 chr1 10968540 10968973 -231695380 - MLT1C LTR MaLR -8 459 1 679 233 0 0 chr1 10969814 10969943 -231694410 - MER58B DNA MER1_type 0 341 213 1065 185 16 0 chr1 10969946 10970033 -231694320 + MER20 DNA MER1_type 1 85 -134 2193 136 79 57 chr1 10970033 10970329 -231694024 - MLT1C LTR MaLR 0 467 156 2412 79 0 0 chr1 10970329 10970619 -231693734 - AluY SINE Alu -21 290 1 2193 136 79 57 chr1 10970619 10970779 -231693574 - MLT1C LTR MaLR -311 156 1 1065 185 16 0 chr1 10970779 10970875 -231693478 + MER20 DNA MER1_type 85 187 -32 524 271 26 7 chr1 10971701 10971856 -231692497 - MIR3 SINE MIR -23 185 28 1840 257 114 25 chr1 10971934 10972565 -231691788 + MER115 DNA AcHobo 1 687 -6 4518 55 2 0 chr1 10972664 10973213 -231691140 + L1PA7 LINE L1 5600 6149 -5 416 281 115 10 chr1 10973776 10973968 -231690385 - MIR SINE MIR -29 233 22 235 289 74 16 chr1 10974059 10974180 -231690173 - MIR SINE MIR -72 190 63 254 71 0 24 chr1 10974441 10974483 -231689870 + (CAT)n Simple_repeat Simple_repeat 2 42 0 321 356 15 8 chr1 10974491 10974623 -231689730 - MIR SINE MIR -112 150 18 282 309 49 8 chr1 10975608 10975731 -231688622 + MIR SINE MIR 33 160 -102 2322 97 3 10 chr1 10976419 10976730 -231687623 - AluSc SINE Alu 0 309 1 2290 99 3 3 chr1 10977522 10977824 -231686529 + AluSg SINE Alu 1 302 -8 321 320 48 34 chr1 10978059 10978206 -231686147 + MER5B DNA MER1_type 1 149 -29 835 263 160 38 chr1 10978495 10978944 -231685409 + MLT1K LTR MaLR 76 579 -9 656 269 13 70 chr1 10979353 10979669 -231684684 - L2 LINE L2 -1 3312 3015 3359 128 25 35 chr1 10980218 10980782 -231683571 + L1PB3 LINE L1 5574 6131 -23 392 229 12 0 chr1 10981492 10981575 -231682778 - MER115 DNA AcHobo -1 692 609 226 276 17 0 chr1 10982114 10982172 -231682181 - Zaphod DNA AcHobo -3964 67 9 1569 100 0 9 chr1 10982460 10982670 -231681683 + AluSg1 SINE Alu 58 265 -44 1789 153 38 0 chr1 10982670 10982957 -231681396 - THE1B LTR MaLR -66 298 1 502 207 35 59 chr1 10983151 10983320 -231681033 - MER113 DNA MER1_type? -178 343 179 365 312 54 51 chr1 10983750 10984045 -231680308 + L2 LINE L2 3017 3312 -1 406 322 35 14 chr1 10984854 10984997 -231679356 - L2 LINE L2 0 3272 3127 257 291 22 99 chr1 10985149 10985331 -231679022 + L2 LINE L2 2887 3054 -218 210 247 27 14 chr1 10985607 10985680 -231678673 - MIR SINE MIR -105 103 30 425 303 9 0 chr1 10985753 10985862 -231678491 - MER94 DNA DNA -1 133 24 2450 70 3 0 chr1 10986232 10986534 -231677819 - AluY SINE Alu -6 305 3 2399 190 22 71 chr1 10986928 10987508 -231676845 + MLT2B3 LTR ERVL 1 552 -2 472 297 53 19 chr1 10987668 10987877 -231676476 + L2 LINE L2 2871 3086 -227 247 366 11 0 chr1 10988032 10988125 -231676228 + L2 LINE L2 3173 3266 -6 388 171 145 34 chr1 10988727 10988844 -231675509 - L2 LINE L2 0 3313 3184 207 244 0 0 chr1 10988974 10989015 -231675338 - L2 LINE L2 -11 3302 3262 2296 117 0 0 chr1 10989186 10989493 -231674860 + AluSg SINE Alu 1 307 -3 1247 125 0 0 chr1 10989556 10989724 -231674629 - AluJb SINE Alu -11 301 134 340 260 63 39 chr1 10989864 10989991 -231674362 + MIR SINE MIR 18 147 -61 2277 200 74 4 chr1 10989995 10990466 -231673887 - MLT1D LTR MaLR -1 504 1 673 286 6 0 chr1 10991309 10991484 -231672869 - MIR SINE MIR -11 251 76 884 178 6 25 chr1 10991537 10991694 -231672659 + MER20 DNA MER1_type 59 212 -7 211 211 0 0 chr1 10991859 10991897 -231672456 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 419 179 19 57 chr1 10992238 10992344 -231672009 - ORSL DNA AcHobo -2 273 172 621 158 18 104 chr1 10992390 10992554 -231671799 + Tigger2 DNA MER2_type 1 150 -2568 * 2108 172 23 0 chr1 10992538 10992892 -231671461 + Tigger2 DNA MER2_type 2350 2711 -7 576 210 17 17 chr1 10992896 10993015 -231671338 - ORSL DNA AcHobo -156 119 1 1652 223 100 83 chr1 10993116 10993695 -231670658 - MLT1E LTR MaLR -4 589 1 318 252 17 42 chr1 10993752 10993871 -231670482 + L2 LINE L2 2929 3044 -269 1871 134 47 0 chr1 10994773 10995048 -231669305 - AluJb SINE Alu -24 288 1 1900 206 64 9 chr1 10995224 10995660 -231668693 + MER31B LTR ERV1 7 466 0 1681 180 70 17 chr1 10995926 10996282 -231668071 + THE1C LTR MaLR 1 375 0 201 343 0 0 chr1 10996370 10996536 -231667817 + (CA)n Simple_repeat Simple_repeat 1 166 0 221 250 0 0 chr1 10996557 10996605 -231667748 + (CA)n Simple_repeat Simple_repeat 1 48 0 200 298 86 68 chr1 10996611 10996903 -231667450 + L2 LINE L2 2966 3262 -10 185 279 13 0 chr1 10996923 10997002 -231667351 + GA-rich Low_complexity Low_complexity 4 83 0 4190 25 4 2 chr1 10997143 10997628 -231666725 - L1PA4 LINE L1 -2 6153 5668 2091 21 0 0 chr1 10997628 10997862 -231666491 + L1PA4 LINE L1 5435 5668 -487 2311 122 0 3 chr1 10997914 10998226 -231666127 + AluSx SINE Alu 1 311 -1 518 256 62 23 chr1 10998410 10998586 -231665767 - MIR SINE MIR -34 228 46 2256 109 16 0 chr1 10998699 10999030 -231665323 - AluSx SINE Alu 0 338 3 275 191 15 0 chr1 10999507 10999575 -231664778 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 422 260 72 50 chr1 11000775 11000956 -231663397 - MIR SINE MIR -15 247 63 258 222 0 16 chr1 11001087 11001150 -231663203 - MIR SINE MIR -26 236 175 246 333 13 0 chr1 11001188 11001266 -231663087 - MIR SINE MIR -183 79 1 1077 254 100 58 chr1 11001348 11001879 -231662474 - MLT1H1 LTR MaLR -2 553 1 195 42 0 0 chr1 11002011 11002035 -231662318 + (TAA)n Simple_repeat Simple_repeat 1 24 0 565 268 16 52 chr1 11002040 11002234 -231662119 - MIR SINE MIR -12 250 64 421 250 83 22 chr1 11002567 11002747 -231661606 + MLT1F1 LTR MaLR 371 561 -6 450 250 18 61 chr1 11002748 11002912 -231661441 + MIR SINE MIR 56 212 -50 3804 135 42 54 chr1 11002963 11003706 -231660647 + L1MB3 LINE L1 5450 6183 0 524 279 48 69 chr1 11004046 11004379 -231659974 + HAL1 LINE L1 176 501 -2006 2700 242 138 37 chr1 11004384 11005659 -231658694 + HAL1 LINE L1 1104 2507 0 2289 89 0 10 chr1 11005789 11006139 -231658214 - AluSx SINE Alu 0 312 1 210 37 0 0 chr1 11006501 11006528 -231657825 + (TC)n Simple_repeat Simple_repeat 1 27 0 306 164 0 0 chr1 11006528 11006583 -231657770 + (CA)n Simple_repeat Simple_repeat 2 56 0 2269 102 0 23 chr1 11007430 11007735 -231656618 - AluSc SINE Alu -11 298 1 824 297 128 20 chr1 11008092 11008546 -231655807 + L2 LINE L2 2811 3313 0 357 159 0 0 chr1 11008549 11008612 -231655741 + (TGGA)n Simple_repeat Simple_repeat 1 63 0 505 314 15 15 chr1 11009330 11009534 -231654819 + L1ME4a LINE L1 5744 5947 -174 2431 71 0 0 chr1 11009541 11009849 -231654504 + AluSg SINE Alu 1 308 0 879 117 17 0 chr1 11009958 11010078 -231654275 - FRAM SINE Alu -32 144 23 392 268 43 53 chr1 11010414 11010623 -231653730 + L2 LINE L2 2854 3060 -212 1906 139 3 50 chr1 11010844 11011167 -231653186 + AluSx SINE Alu 1 308 -4 260 381 38 12 chr1 11013971 11014131 -231650222 - L2 LINE L2 -610 2704 2541 861 257 23 35 chr1 11014166 11014423 -231649930 + MIR SINE MIR 9 262 0 396 40 0 0 chr1 11015941 11015991 -231648362 + (TG)n Simple_repeat Simple_repeat 2 51 0 2641 26 0 0 chr1 11016029 11016333 -231648020 - L1PA2 LINE L1 -4 6151 5848 8978 21 0 0 chr1 11016333 11017864 -231646489 + L1PA2 LINE L1 4343 5873 -282 21 57 0 0 chr1 11019175 11019210 -231645143 + AT_rich Low_complexity Low_complexity 1 35 0 240 314 92 46 chr1 11019610 11019849 -231644504 + L2 LINE L2 2934 3183 -89 377 261 200 0 chr1 11019877 11019992 -231644361 + MER5A DNA MER1_type 46 183 -6 377 231 114 29 chr1 11020176 11020317 -231644036 + MIR SINE MIR 9 163 -45 278 185 11 65 chr1 11020322 11020414 -231643939 - L2 LINE L2 -24 3289 3203 21 71 0 0 chr1 11020415 11020457 -231643896 + AT_rich Low_complexity Low_complexity 1 42 0 1073 192 10 0 chr1 11020827 11021025 -231643328 - MER3 DNA MER1_type -9 200 1 226 246 16 0 chr1 11021033 11021094 -231643259 - MER5A DNA MER1_type 0 189 128 234 232 89 0 chr1 11021182 11021238 -231643115 - MER5A DNA MER1_type -122 67 7 331 275 128 27 chr1 11021698 11021847 -231642506 - MER5B DNA MER1_type -10 168 5 390 303 54 11 chr1 11022269 11022454 -231641899 - L1ME4a LINE L1 -252 5869 5677 389 288 151 27 chr1 11023048 11023267 -231641086 + MIR SINE MIR 8 253 -9 1708 166 9 31 chr1 11023267 11023586 -231640767 - AluJo SINE Alu 0 312 1 323 306 29 40 chr1 11023618 11023791 -231640562 - MIR SINE MIR -78 184 14 21 57 0 0 chr1 11023996 11024031 -231640322 + AT_rich Low_complexity Low_complexity 1 35 0 408 104 0 0 chr1 11024066 11024133 -231640220 + (T)n Simple_repeat Simple_repeat 1 67 0 267 289 218 13 chr1 11024994 11025150 -231639203 + MER5A DNA MER1_type 2 189 0 325 243 199 15 chr1 11025174 11025310 -231639043 - MER5A DNA MER1_type -6 183 23 1098 179 18 46 chr1 11025335 11025553 -231638800 + MER20B DNA MER1_type 1 212 -7 3583 133 21 4 chr1 11026298 11026816 -231637537 + MER1A DNA MER1_type 1 527 0 2991 170 13 31 chr1 11027587 11028135 -231636218 - MLT2B3 LTR ERVL -16 538 1 657 212 60 0 chr1 11028523 11028674 -231635679 + MIR SINE MIR 102 261 -1 241 273 91 20 chr1 11028996 11029095 -231635258 + MIR SINE MIR 8 113 -149 195 233 23 0 chr1 11029157 11029200 -231635153 + L2 LINE L2 3218 3261 -11 220 139 0 0 chr1 11030173 11030209 -231634144 + MIR SINE MIR 113 148 -114 243 352 41 28 chr1 11030702 11030847 -231633506 + MIR SINE MIR 28 174 -88 924 89 0 0 chr1 11030861 11030973 -231633380 - AluSq/x SINE Alu -184 129 18 1541 51 0 0 chr1 11030973 11031151 -231633202 + AluSq SINE Alu 136 313 0 805 210 28 23 chr1 11031945 11032121 -231632232 - MER58 DNA MER1_type -164 177 1 518 266 20 64 chr1 11033383 11033586 -231630767 + L3 LINE CR1 1097 1290 -287 267 191 32 16 chr1 11033636 11033699 -231630654 - MER20B DNA MER1_type -13 770 707 1562 151 26 79 chr1 11033782 11034086 -231630267 - AluSg SINE Alu -22 288 1 779 249 100 17 chr1 11034247 11034707 -231629646 - MER20B DNA MER1_type -240 543 1 810 201 80 20 chr1 11034751 11035009 -231629344 - MIR SINE MIR -8 254 6 225 272 37 12 chr1 11035036 11035117 -231629236 + L3 LINE CR1 1375 1457 -120 395 329 87 7 chr1 11035204 11035427 -231628926 - L2 LINE L2 -315 2998 2762 212 185 15 62 chr1 11035586 11035651 -231628702 + GA-rich Low_complexity Low_complexity 4 65 0 735 176 22 140 chr1 11036938 11037099 -231627254 + MIR SINE MIR 32 162 -100 4225 151 20 22 chr1 11037099 11037833 -231626520 + L1MB3 LINE L1 5450 6182 -1 735 176 22 140 chr1 11037833 11037893 -231626460 + MIR SINE MIR 162 227 -35 224 337 74 34 chr1 11037957 11038132 -231626221 + L2 LINE L2 3122 3303 -10 340 339 53 12 chr1 11038598 11038769 -231625584 - MIR3 SINE MIR -19 189 12 4928 168 24 14 chr1 11039211 11040163 -231624190 + L1 LINE L1 4084 5045 -1101 1205 170 81 24 chr1 11040164 11040411 -231623942 + MSTB LTR MaLR 163 423 -3 707 203 25 6 chr1 11040420 11040583 -231623770 + L1 LINE L1 5107 5272 -874 347 331 135 30 chr1 11041032 11041403 -231622950 + L2 LINE L2 2240 2649 -665 763 186 12 47 chr1 11041470 11041490 -231622863 - L1ME3A LINE L1 -8 6162 6143 2686 115 57 34 chr1 11041490 11041908 -231622445 - MSTC LTR MaLR 0 428 1 763 186 12 47 chr1 11041908 11042059 -231622294 - L1ME3A LINE L1 -27 6143 5997 1610 254 46 55 chr1 11042064 11043272 -231621081 - L1ME3A LINE L1 -354 5816 4623 27152 129 11 17 chr1 11043275 11044003 -231620350 - L1PA8A LINE L1 0 6446 5715 2778 89 20 0 chr1 11044003 11044351 -231620002 - THE1A LTR MaLR 0 355 1 27152 129 11 17 chr1 11044351 11045537 -231618816 - L1PA8A LINE L1 -731 5715 4523 2753 13 0 0 chr1 11045537 11045836 -231618517 + AluYa5 SINE Alu 1 299 -12 27152 129 11 17 chr1 11045836 11047241 -231617112 - L1PA8A LINE L1 -1923 4523 3110 2077 139 3 3 chr1 11047241 11047551 -231616802 - AluSg SINE Alu 0 310 1 27152 129 11 17 chr1 11047551 11049423 -231614930 - L1PA8A LINE L1 -3336 3110 1261 252 111 0 0 chr1 11049423 11049468 -231614885 + (TTG)n Simple_repeat Simple_repeat 2 46 0 27152 129 11 17 chr1 11049468 11050719 -231613634 - L1PA8A LINE L1 -5185 1261 3 1251 82 0 0 chr1 11050789 11050947 -231613406 - MLT2A1 LTR ERVL -81 363 206 1618 258 98 15 chr1 11050955 11051568 -231612785 - L1ME3A LINE L1 -1517 4629 3966 252 0 0 0 chr1 11051719 11051747 -231612606 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 448 277 88 112 chr1 11051776 11052115 -231612238 + L2 LINE L2 2933 3263 -9 193 284 189 11 chr1 11052123 11052218 -231612135 + MIR3 SINE MIR 91 202 -6 308 286 32 79 chr1 11052823 11053075 -231611278 + L2 LINE L2 3072 3311 -2 654 304 69 50 chr1 11053329 11053589 -231610764 - MLT1I LTR MaLR -77 332 68 267 328 115 0 chr1 11054330 11054452 -231609901 - L2 LINE L2 0 3272 3137 1731 208 2 46 chr1 11054933 11055169 -231609184 - MER63B DNA MER1_type -667 395 183 1454 68 45 0 chr1 11055169 11055345 -231609008 - L1PA7 LINE L1 -3 6151 5968 1731 208 2 46 chr1 11055345 11055521 -231608832 - MER63B DNA MER1_type -879 183 1 279 197 105 13 chr1 11055606 11055682 -231608671 + MLT1H LTR MaLR 453 535 -14 2477 231 10 20 chr1 11055927 11056523 -231607830 - L1ME2 LINE L1 -10 6154 5565 300 243 14 0 chr1 11056523 11056597 -231607756 - MER69 DNA AcHobo -370 2156 2082 338 308 46 15 chr1 11056911 11057041 -231607312 + L2 LINE L2 3180 3313 0 207 327 47 37 chr1 11057203 11057310 -231607043 + L2 LINE L2 3137 3244 -28 1844 182 109 17 chr1 11057345 11057703 -231606650 + MSTD LTR MaLR 4 394 -2 749 310 10 0 chr1 11057900 11058100 -231606253 + MLT1J2 LTR MaLR 7 208 -242 375 245 0 41 chr1 11058213 11058311 -231606042 + MLT1J2 LTR MaLR 352 445 -5 1178 180 61 56 chr1 11058430 11058458 -231605895 + MSTD LTR MaLR 1 27 -369 1519 221 115 11 chr1 11058458 11058815 -231605538 + MSTD LTR MaLR 1 394 -2 1178 180 61 56 chr1 11058815 11059128 -231605225 + MSTD LTR MaLR 27 393 -3 2331 54 14 4 chr1 11059182 11059459 -231604894 + L1PA8 LINE L1 5890 6169 -3 536 202 88 9 chr1 11059896 11060010 -231604343 + LTR67 LTR ERVL 432 554 -3 2938 177 34 14 chr1 11060447 11061005 -231603348 + L1MB7 LINE L1 5496 6064 -120 2918 10 0 0 chr1 11061001 11061319 -231603034 - L1PA3 LINE L1 -102 6053 5733 * 871 0 0 48 chr1 11061319 11061416 -231602937 + L1PA3 LINE L1 6056 6155 0 361 87 0 0 chr1 11061519 11061565 -231602788 + MLT2B2 LTR ERVL 470 515 0 579 183 0 9 chr1 11061698 11061813 -231602540 + L1MB8 LINE L1 6044 6157 -21 231 296 111 0 chr1 11061847 11061928 -231602425 - L2 LINE L2 -12 3260 3171 586 264 89 29 chr1 11061969 11062215 -231602138 - L1ME LINE L1 -339 5782 5522 2417 76 3 0 chr1 11062309 11062612 -231601741 + AluY SINE Alu 1 304 -7 5363 126 39 72 chr1 11062890 11064055 -231600298 + pTR5 LTR ERV1 742 2025 -413 298 224 41 31 chr1 11064055 11064153 -231600200 + LTR30 LTR ERV1 544 642 -80 1537 111 4 4 chr1 11064156 11064382 -231599971 + pTR5 LTR ERV1 172 397 -2041 204 318 30 0 chr1 11064639 11064705 -231599648 + MIR SINE MIR 83 150 -58 604 227 85 0 chr1 11065083 11065224 -231599129 + MLT1G LTR MaLR 7 159 -431 88 67 0 0 chr1 11065227 11065392 -231598961 + AT_rich Low_complexity Low_complexity 1 165 0 294 292 31 44 chr1 11065395 11065607 -231598746 - MER106B DNA MER1_type -25 211 1 594 253 51 51 chr1 11065608 11065861 -231598492 + MLT1G LTR MaLR 151 403 -187 1183 281 66 19 chr1 11065894 11066644 -231597709 - L1MEc LINE L1 -3557 3384 2644 2481 65 0 10 chr1 11066664 11066972 -231597381 - AluY SINE Alu -6 305 1 357 296 47 17 chr1 11067131 11067364 -231596989 - L1MEc LINE L1 -4725 2397 2158 233 279 10 107 chr1 11067427 11067501 -231596852 - L1MEc LINE L1 -4880 2051 1971 1773 166 24 0 chr1 11067501 11067790 -231596563 - AluJb SINE Alu -8 304 9 233 279 10 107 chr1 11067790 11067912 -231596441 - L1MEc LINE L1 -4960 1971 1874 264 234 21 69 chr1 11067955 11068100 -231596253 - L1MEc LINE L1 -5061 1870 1733 223 178 0 0 chr1 11068106 11068151 -231596202 + (TA)n Simple_repeat Simple_repeat 2 46 0 232 240 53 0 chr1 11068169 11068244 -231596109 - L1MEc LINE L1 -4932 1491 1413 2351 88 0 3 chr1 11068467 11068773 -231595580 - AluY SINE Alu -6 305 1 311 271 75 15 chr1 11069216 11069349 -231595004 - MIR SINE MIR -65 197 57 225 0 0 0 chr1 11070789 11070814 -231593539 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 206 343 15 0 chr1 11070976 11071043 -231593310 - L2 LINE L2 0 3313 3246 372 304 95 6 chr1 11071447 11071605 -231592748 + L2 LINE L2 3137 3308 -5 234 191 22 112 chr1 11071696 11071782 -231592571 + MER68 LTR ERV1 3 80 -482 1266 220 130 71 chr1 11071782 11072259 -231592094 - MLT1D LTR MaLR 0 505 1 2113 205 44 5 chr1 11072311 11072740 -231591613 + MER68 LTR ERV1 117 562 0 217 175 25 0 chr1 11072762 11072802 -231591551 - L2 LINE L2 -261 3052 3012 202 241 11 126 chr1 11072773 11072860 -231591493 - MIR SINE MIR -90 118 42 * 257 59 0 0 chr1 11072849 11072883 -231591470 + MIR SINE MIR 119 152 -110 944 285 26 3 chr1 11072883 11073357 -231590996 - LTR33 LTR ERVL -9 512 1 304 278 0 46 chr1 11073364 11073472 -231590881 + MIR SINE MIR 150 252 -10 237 256 0 0 chr1 11073495 11073577 -231590776 + GA-rich Low_complexity Low_complexity 2 83 0 184 239 315 0 chr1 11073590 11073682 -231590671 + L2 LINE L2 3193 3313 0 374 275 106 14 chr1 11073770 11073912 -231590441 - MIR3 SINE MIR -51 157 3 708 158 33 0 chr1 11074237 11074357 -231589996 + AluY SINE Alu 188 311 0 2701 142 36 5 chr1 11074551 11074966 -231589387 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr1 11074993 11075015 -231589338 + (CAA)n Simple_repeat Simple_repeat 3 24 0 516 256 198 64 chr1 11075167 11075651 -231588702 + MLT1H LTR MaLR 1 549 0 242 293 81 40 chr1 11075955 11076054 -231588299 - L3b LINE CR1 -9 1574 1472 547 318 55 18 chr1 11076112 11076329 -231588024 + MIR SINE MIR 37 261 -1 338 359 69 13 chr1 11076567 11076726 -231587627 + MIR SINE MIR 20 187 -75 457 339 76 0 chr1 11076898 11077069 -231587284 - L2 LINE L2 -280 3033 2850 1879 160 21 59 chr1 11077069 11077444 -231586909 - MLT1C LTR MaLR -106 361 1 521 266 23 8 chr1 11077444 11077572 -231586781 + L2 LINE L2 3184 3313 0 1034 282 222 15 chr1 11077611 11078160 -231586193 - L2 LINE L2 -947 2367 1705 228 328 94 12 chr1 11078966 11079137 -231585216 - MIR SINE MIR -77 185 1 312 281 114 0 chr1 11079387 11079501 -231584852 + L1MD3 LINE L1 7869 7995 0 1179 196 25 49 chr1 11079673 11079999 -231584354 - MER33 DNA MER1_type 0 324 7 219 359 0 0 chr1 11080021 11080113 -231584240 + MIR SINE MIR 47 138 -124 204 83 0 100 chr1 11080399 11080459 -231583894 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 188 379 129 0 chr1 11080945 11081069 -231583284 - L2 LINE L2 -35 3237 3098 779 233 67 84 chr1 11081336 11081776 -231582577 + L2 LINE L2 2622 3044 -269 1424 208 185 50 chr1 11081776 11082257 -231582096 + MLT1H LTR MaLR 1 546 -3 779 233 67 84 chr1 11082257 11082508 -231581845 + L2 LINE L2 3044 3298 -15 658 296 49 16 chr1 11082553 11082800 -231581553 - MIR SINE MIR -7 255 1 405 0 0 0 chr1 11082814 11082859 -231581494 + (CA)n Simple_repeat Simple_repeat 2 46 0 226 261 15 85 chr1 11083716 11083761 -231580592 + MIR SINE MIR 107 154 -108 2252 114 0 0 chr1 11083761 11084060 -231580293 + AluSx SINE Alu 1 299 -13 226 261 15 85 chr1 11084060 11084144 -231580209 + MIR SINE MIR 154 227 -35 272 279 101 17 chr1 11084324 11084503 -231579850 + L2 LINE L2 2817 3010 -303 252 252 47 9 chr1 11084587 11084694 -231579659 - L2 LINE L2 -247 3025 2915 209 278 179 20 chr1 11085137 11085288 -231579065 + L2 LINE L2 3048 3222 -91 203 250 0 0 chr1 11085288 11085332 -231579021 + (TG)n Simple_repeat Simple_repeat 2 45 0 515 200 9 9 chr1 11085551 11085656 -231578697 + L2 LINE L2 3209 3313 0 739 237 82 14 chr1 11086248 11086467 -231577886 + MIR SINE MIR 29 262 0 413 341 81 30 chr1 11086728 11087062 -231577291 - L2 LINE L2 -18 3254 2904 905 200 104 18 chr1 11087258 11087478 -231576875 - MLT1A1 LTR MaLR 0 365 127 352 274 65 48 chr1 11087763 11088011 -231576342 + L2 LINE L2 2829 3080 -192 2526 52 0 19 chr1 11088022 11088330 -231576023 - AluY SINE Alu -9 302 1 370 349 30 0 chr1 11088430 11088562 -231575791 + L2 LINE L2 3137 3272 0 2021 182 45 26 chr1 11088725 11089149 -231575204 + MSTB1 LTR MaLR 1 432 0 216 97 0 0 chr1 11090295 11090326 -231574027 + (A)n Simple_repeat Simple_repeat 1 31 0 5548 145 39 32 chr1 11091028 11092347 -231572006 - Ricksha DNA DNA -10 3244 1889 682 125 0 0 chr1 11092350 11092494 -231571859 - AluSg/x SINE Alu 0 345 202 1069 167 21 0 chr1 11092497 11092683 -231571670 - Ricksha DNA DNA -1350 1896 1707 572 191 8 24 chr1 11092665 11092791 -231571562 - Ricksha DNA DNA -3114 132 9 * 552 269 93 56 chr1 11092878 11093202 -231571151 + HAL1 LINE L1 1316 1651 -856 373 239 39 39 chr1 11093548 11093678 -231570675 - L3 LINE CR1 -110 1467 1338 353 264 76 21 chr1 11093680 11093824 -231570529 - MIR3 SINE MIR 0 208 57 405 0 0 0 chr1 11094239 11094284 -231570069 + (TTA)n Simple_repeat Simple_repeat 3 47 0 432 0 0 0 chr1 11094947 11094995 -231569358 + (TTA)n Simple_repeat Simple_repeat 3 50 0 404 309 16 0 chr1 11095079 11095202 -231569151 + MER94 DNA DNA 7 131 -3 418 268 237 11 chr1 11095204 11095394 -231568959 - MIR SINE MIR -28 234 2 374 290 41 21 chr1 11095768 11095913 -231568440 + LTR33 LTR ERVL 65 212 -309 520 241 23 8 chr1 11096117 11096250 -231568103 - L2 LINE L2 -4 3309 3175 238 279 127 57 chr1 11096805 11097034 -231567319 + MIR SINE MIR 17 261 -1 368 265 26 8 chr1 11097642 11097759 -231566594 + MIR SINE MIR 28 146 -116 2075 116 71 14 chr1 11098049 11098402 -231565951 - THE1C LTR MaLR 0 375 3 1418 201 113 36 chr1 11098497 11098603 -231565750 + MLT1D LTR MaLR 40 136 -369 2215 117 27 78 chr1 11098603 11099014 -231565339 + MLT1B LTR MaLR 1 390 0 1418 201 113 36 chr1 11099014 11099102 -231565251 + MLT1D LTR MaLR 136 216 -289 1231 126 126 166 chr1 11099102 11099548 -231564805 + MSTA LTR MaLR 1 428 0 1418 201 113 36 chr1 11099548 11099769 -231564584 + MLT1D LTR MaLR 216 488 -17 408 259 104 0 chr1 11100189 11100324 -231564029 - MIR SINE MIR -113 149 1 265 296 80 37 chr1 11100405 11100567 -231563786 + L3b LINE CR1 1320 1488 -95 234 0 0 0 chr1 11100882 11100908 -231563445 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 288 0 0 0 chr1 11100907 11100939 -231563414 + (CA)n Simple_repeat Simple_repeat 1 32 0 2233 100 3 3 chr1 11101128 11101427 -231562926 - AluSx SINE Alu -13 299 1 674 284 58 23 chr1 11101459 11102078 -231562275 - L1MEd LINE L1 -3707 2434 1813 * 3528 207 40 13 chr1 11102075 11102866 -231561487 - L1MB8 LINE L1 -6 6172 5360 23 0 0 0 chr1 11102880 11102903 -231561450 + AT_rich Low_complexity Low_complexity 1 23 0 728 281 123 48 chr1 11102924 11103153 -231561200 - L1MEd LINE L1 -4482 1647 1436 849 113 0 71 chr1 11103153 11103294 -231561059 - FLAM_C SINE Alu 0 133 3 728 281 123 48 chr1 11103294 11103890 -231560463 - L1MEd LINE L1 -4693 1436 817 2965 10 0 0 chr1 11104046 11104360 -231559993 - AluYb8 SINE Alu -4 314 1 180 216 0 0 chr1 11105255 11105292 -231559061 + L2 LINE L2 3268 3304 -9 2085 118 20 3 chr1 11105391 11105706 -231558647 - AluSx SINE Alu 0 312 1 260 231 157 8 chr1 11105925 11106046 -231558307 - L1MDa LINE L1 -5124 1416 1278 2191 186 4 15 chr1 11106089 11106546 -231557807 + L1PB4 LINE L1 3261 3712 -2434 2311 176 31 2 chr1 11106546 11106962 -231557391 + MSTA LTR MaLR 1 428 0 5572 170 50 3 chr1 11106962 11107937 -231556416 + MSTA-int LTR MaLR 16 1036 -615 1025 149 0 0 chr1 11107902 11108056 -231556297 - MST-int LTR MaLR -535 1116 963 * 3052 161 19 29 chr1 11108058 11109275 -231555078 + L1PB4 LINE L1 4122 5350 -806 2287 114 7 3 chr1 11109275 11109582 -231554771 + AluSg SINE Alu 1 308 -2 3052 161 19 29 chr1 11109582 11109729 -231554624 + L1PB4 LINE L1 5350 5497 -659 3052 124 53 32 chr1 11109729 11110217 -231554136 + L1PB4 LINE L1 5618 6120 -36 2238 102 0 23 chr1 11110217 11110522 -231553831 + AluSp SINE Alu 1 298 -15 3052 124 53 32 chr1 11110522 11110558 -231553795 + L1PB4 LINE L1 6120 6154 -2 351 0 0 0 chr1 11110717 11110756 -231553597 + (CA)n Simple_repeat Simple_repeat 2 40 0 257 207 35 0 chr1 11110777 11110835 -231553518 - MIR SINE MIR -62 146 87 569 246 120 5 chr1 11111143 11111334 -231553019 + MIR SINE MIR 2 214 -48 2322 87 0 0 chr1 11111348 11111664 -231552689 - AluSq SINE Alu 0 316 1 405 243 223 15 chr1 11112719 11112921 -231551432 + MIR SINE MIR 19 262 0 381 341 0 0 chr1 11112950 11113073 -231551280 + L2 LINE L2 3149 3271 -1 2195 92 3 14 chr1 11113116 11113408 -231550945 - AluSp SINE Alu -24 289 1 1180 208 7 26 chr1 11113433 11113702 -231550651 + L1MD3 LINE L1 7732 7995 0 565 247 52 65 chr1 11113869 11114059 -231550294 + MIR SINE MIR 12 200 -62 2829 10 0 0 chr1 11114059 11114360 -231549993 + AluYa5 SINE Alu 1 301 -10 565 247 52 65 chr1 11114360 11114400 -231549953 + MIR SINE MIR 200 239 -23 1931 132 0 64 chr1 11114461 11114772 -231549581 + AluSx SINE Alu 1 291 -21 312 137 0 0 chr1 11115120 11115171 -231549182 + (CA)n Simple_repeat Simple_repeat 1 51 0 258 227 136 83 chr1 11115956 11116088 -231548265 + L2 LINE L2 3152 3290 -23 728 281 25 17 chr1 11116592 11116827 -231547526 + MIR SINE MIR 13 249 -13 1114 126 0 13 chr1 11117412 11117571 -231546782 + FRAM SINE Alu 13 169 -7 277 156 0 0 chr1 11118136 11118181 -231546172 + MIR SINE MIR 81 125 -83 219 178 0 22 chr1 11118287 11118332 -231546021 + (CAT)n Simple_repeat Simple_repeat 3 46 0 564 333 80 21 chr1 11118602 11119025 -231545328 + L2 LINE L2 2866 3313 0 183 262 0 0 chr1 11119406 11119448 -231544905 - L3 LINE CR1 -562 1015 974 198 260 0 60 chr1 11120448 11120498 -231543855 - L2 LINE L2 -200 3072 3026 553 297 178 25 chr1 11120599 11121202 -231543151 + L2 LINE L2 2369 3060 -253 1534 176 13 54 chr1 11121303 11121687 -231542666 + L1MB8 LINE L1 5773 6146 -32 1742 121 5 80 chr1 11121687 11122058 -231542295 - MER4A LTR ERV1 0 664 263 655 121 0 10 chr1 11122058 11122157 -231542196 - MER4A LTR ERV1 -566 98 1 27 0 0 0 chr1 11122313 11122340 -231542013 + AT_rich Low_complexity Low_complexity 1 27 0 290 308 6 44 chr1 11122546 11122728 -231541625 + L2 LINE L2 2340 2514 -800 346 194 15 0 chr1 11122774 11122841 -231541512 + Tigger2 DNA MER2_type 2 69 -2649 * 2583 148 20 26 chr1 11122826 11123026 -231541327 + Tigger2 DNA MER2_type 2268 2468 -250 2682 43 0 0 chr1 11123026 11123327 -231541026 - AluY SINE Alu -10 301 1 2583 148 20 26 chr1 11123327 11123579 -231540774 + Tigger2 DNA MER2_type 2468 2717 -1 2357 81 0 20 chr1 11124688 11124986 -231539367 + AluY SINE Alu 1 292 -19 311 239 49 65 chr1 11125104 11125122 -231539231 + L1ME3A LINE L1 4517 4534 -1612 1223 212 9 0 chr1 11125122 11125344 -231539009 + MER58A DNA MER1_type 1 224 0 311 239 49 65 chr1 11125344 11125509 -231538844 + L1ME3A LINE L1 4534 4697 -1449 2783 109 104 0 chr1 11125679 11126119 -231538234 + LTR19A LTR ERV1 1 486 0 1238 237 162 30 chr1 11126162 11126355 -231537998 + L1ME3A LINE L1 4698 4864 -1282 1836 112 24 0 chr1 11126355 11126604 -231537749 - AluSg SINE Alu -10 300 46 1238 237 162 30 chr1 11126604 11127010 -231537343 + L1ME3A LINE L1 4864 5376 -770 1476 227 79 42 chr1 11127013 11127532 -231536821 + L1ME3A LINE L1 5585 6122 -48 545 186 0 0 chr1 11127694 11127791 -231536562 + FRAM SINE Alu 72 168 -8 9384 99 31 12 chr1 11127791 11128791 -231535562 - Tigger1 DNA MER2_type -210 2208 1174 1781 166 10 16 chr1 11128791 11129105 -231535248 - AluJb SINE Alu 0 312 1 9384 99 31 12 chr1 11129105 11129449 -231534904 - Tigger1 DNA MER2_type -1244 1174 838 212 321 0 0 chr1 11129493 11129549 -231534804 + (CA)n Simple_repeat Simple_repeat 2 57 0 228 306 96 64 chr1 11129579 11130105 -231534248 + L2 LINE L2 2682 3221 -51 954 193 71 42 chr1 11131117 11131356 -231532997 + ORSL DNA AcHobo 1 246 -29 234 316 25 0 chr1 11131459 11131538 -231532815 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 1240 238 57 3 chr1 11131544 11131843 -231532510 - MLT1E LTR MaLR 0 593 279 469 157 0 0 chr1 11131852 11131922 -231532431 - AluJ/FLAM SINE Alu -241 71 2 258 61 0 0 chr1 11131925 11131958 -231532395 - Tigger1 DNA MER2_type -1237 1181 1149 * 337 221 54 9 chr1 11131957 11132148 -231532205 - MLT1E LTR MaLR -286 368 83 419 246 161 0 chr1 11132206 11132336 -231532017 - MIR SINE MIR -32 230 80 793 168 138 6 chr1 11132552 11132719 -231531634 - MER5A DNA MER1_type 0 189 1 260 280 125 42 chr1 11132728 11132896 -231531457 - MER5A DNA MER1_type -1 188 7 1904 133 28 0 chr1 11133723 11134008 -231530345 + AluSx SINE Alu 1 293 -19 207 249 55 166 chr1 11134485 11134702 -231529651 - MIR SINE MIR -19 243 51 2071 153 72 48 chr1 11135082 11135270 -231529083 + MSTA LTR MaLR 1 183 -245 2050 130 0 0 chr1 11135270 11135577 -231528776 + AluSx SINE Alu 1 307 -5 2071 153 72 48 chr1 11135577 11135806 -231528547 + MSTA LTR MaLR 183 428 0 2310 149 37 42 chr1 11135864 11136101 -231528252 - MSTA LTR MaLR 0 428 192 2088 113 0 3 chr1 11136101 11136392 -231527961 - AluSc SINE Alu -19 290 1 2310 149 37 42 chr1 11136392 11136584 -231527769 - MSTA LTR MaLR -236 192 1 870 186 52 107 chr1 11140403 11140822 -231523531 + MLT1D LTR MaLR 1 390 0 874 281 136 63 chr1 11140839 11142124 -231522229 + L1MEd LINE L1 149 1568 -4742 1621 138 64 22 chr1 11143785 11144097 -231520256 - L1MA4 LINE L1 -6 6294 5970 337 309 68 25 chr1 11144973 11145135 -231519218 + MER102b DNA MER1_type 1 169 -172 290 267 114 0 chr1 11145323 11145428 -231518925 + MER94 DNA DNA 2 118 -16 201 94 0 0 chr1 11145544 11145576 -231518777 + (T)n Simple_repeat Simple_repeat 1 32 0 984 237 18 9 chr1 11145746 11145970 -231518383 - MIR SINE MIR -28 234 9 2052 79 0 0 chr1 11146709 11146974 -231517379 + AluSx SINE Alu 35 299 -13 182 352 66 0 chr1 11146981 11147072 -231517281 - L2 LINE L2 -80 3192 3096 554 307 90 14 chr1 11147203 11147415 -231516938 + MIR SINE MIR 23 250 -12 248 269 0 19 chr1 11148893 11148945 -231515408 + MIR SINE MIR 22 72 -190 1142 222 0 30 chr1 11149322 11149552 -231514801 - MER58A DNA MER1_type -1 223 1 1605 161 0 8 chr1 11150027 11150288 -231514065 + AluJo SINE Alu 1 259 -53 927 228 0 36 chr1 11150288 11150481 -231513872 + MER58A DNA MER1_type 39 224 0 827 151 0 0 chr1 11150501 11150627 -231513726 + FRAM SINE Alu 39 164 -12 180 300 0 0 chr1 11150808 11150848 -231513505 + L2 LINE L2 3214 3253 -19 761 221 39 93 chr1 11151530 11151741 -231512612 - MIR SINE MIR -35 173 9 283 311 56 67 chr1 11151800 11151980 -231512373 - MIR3 SINE MIR -11 197 20 23 54 0 0 chr1 11153580 11153617 -231510736 + GC_rich Low_complexity Low_complexity 1 37 0 319 309 109 23 chr1 11154868 11155043 -231509310 - L1MC2 LINE L1 -430 5914 5725 2148 99 0 40 chr1 11155064 11155387 -231508966 + AluSx SINE Alu 3 312 0 370 255 20 10 chr1 11155415 11155513 -231508840 + MER94 DNA DNA 1 99 -35 453 300 63 53 chr1 11155534 11155941 -231508412 - L1MC2 LINE L1 -582 5660 5255 435 331 134 37 chr1 11155955 11156258 -231508095 - L1MC2 LINE L1 -907 5239 4886 1632 226 8 16 chr1 11156258 11156625 -231507728 + MLT1A1 LTR MaLR 1 364 -1 435 331 134 37 chr1 11156625 11156723 -231507630 - L1MC2 LINE L1 -1260 4886 4799 238 333 132 8 chr1 11156811 11156940 -231507413 + MER102b DNA MER1_type 164 308 -33 3250 72 65 0 chr1 11157555 11157985 -231506368 + LTR22A LTR ERVK 1 458 0 273 299 41 10 chr1 11158345 11158442 -231505911 - MIR SINE MIR -108 154 55 3105 202 14 3 chr1 11158613 11159262 -231505091 - L1MB7 LINE L1 -10 6174 5519 21 36 0 0 chr1 11159539 11159567 -231504786 + AT_rich Low_complexity Low_complexity 1 28 0 4684 223 103 16 chr1 11159883 11160432 -231503921 + L1MC4 LINE L1 6447 6946 -1096 357 24 0 0 chr1 11160432 11160474 -231503879 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 4684 223 103 16 chr1 11160474 11161249 -231503104 + L1MC4 LINE L1 6946 7887 -155 1744 168 7 3 chr1 11161375 11161678 -231502675 + AluJb SINE Alu 1 304 -8 631 123 16 8 chr1 11161678 11161800 -231502553 + GA-rich Low_complexity Low_complexity 1 123 0 304 293 73 6 chr1 11161916 11162080 -231502273 + L1ME2 LINE L1 976 1150 -4969 2325 223 22 50 chr1 11162461 11163004 -231501349 + MLT2B3 LTR ERVL 27 554 0 928 264 54 70 chr1 11163027 11163987 -231500366 + L1ME2 LINE L1 1263 2409 -3720 316 270 51 82 chr1 11164042 11164238 -231500115 + L1ME2 LINE L1 2556 2745 -3384 1709 263 103 47 chr1 11164238 11165208 -231499145 + L1ME2 LINE L1 3951 4865 -1282 2160 92 3 3 chr1 11165208 11165503 -231498850 - AluSx SINE Alu -15 297 3 1709 263 103 47 chr1 11165503 11165809 -231498544 + L1ME2 LINE L1 4865 5152 -995 1857 149 0 0 chr1 11165809 11166125 -231498228 + AluJb SINE Alu 5 320 0 1709 263 103 47 chr1 11166125 11166688 -231497665 + L1ME2 LINE L1 5152 5906 -241 2443 62 0 3 chr1 11166695 11167001 -231497352 - AluY SINE Alu -6 305 1 495 220 102 0 chr1 11167719 11167837 -231496516 + MER94 DNA DNA 1 130 -4 239 150 0 0 chr1 11168227 11168267 -231496086 + L2 LINE L2 3270 3309 -4 272 274 131 46 chr1 11168295 11168470 -231495883 + L2 LINE L2 2887 3076 -196 481 186 186 21 chr1 11168534 11168679 -231495674 + MER96B DNA MER1_type? 12 180 -237 584 178 25 76 chr1 11168685 11168842 -231495511 - MER5A DNA MER1_type -40 149 1 1167 219 139 3 chr1 11169003 11169291 -231495062 + MLT1D LTR MaLR 1 327 -178 326 217 29 0 chr1 11169318 11169387 -231494966 + L2 LINE L2 2897 2967 -305 1719 154 0 20 chr1 11169467 11169603 -231494750 + AluJb SINE Alu 1 138 -174 2170 113 3 3 chr1 11169603 11169914 -231494439 + AluSq SINE Alu 1 311 -2 1719 154 0 20 chr1 11169914 11170082 -231494271 + AluJb SINE Alu 138 299 -13 1211 117 0 0 chr1 11170239 11170418 -231493935 + FRAM SINE Alu 1 171 -5 2060 178 36 64 chr1 11170457 11170703 -231493650 + MLT1C LTR MaLR 1 229 -238 2408 68 0 0 chr1 11170703 11171012 -231493341 - AluY SINE Alu -2 309 1 2060 178 36 64 chr1 11171012 11171237 -231493116 + MLT1C LTR MaLR 229 459 -8 240 369 10 10 chr1 11171394 11171497 -231492856 - MLT1L LTR MaLR -295 320 218 369 231 0 13 chr1 11171623 11171701 -231492652 - ORSL DNA AcHobo -7 268 192 427 152 13 25 chr1 11171738 11171817 -231492536 - ORSL DNA AcHobo -189 86 9 239 254 0 17 chr1 11171828 11171887 -231492466 - MLT1L LTR MaLR -557 58 1 1340 222 76 22 chr1 11172103 11172473 -231491880 + MLT1B LTR MaLR 1 390 0 307 216 111 17 chr1 11172476 11172589 -231491764 - MIR3 SINE MIR -48 160 33 531 300 20 35 chr1 11173682 11173882 -231490471 + L2 LINE L2 2895 3091 -181 225 263 0 18 chr1 11174254 11174311 -231490042 + LTR67 LTR ERVL 494 549 -8 283 323 50 20 chr1 11174344 11174443 -231489910 + L2 LINE L2 3166 3267 -5 1485 173 39 0 chr1 11174865 11175120 -231489233 - MER58B DNA MER1_type 0 341 77 1591 94 4 13 chr1 11175122 11175356 -231488997 + L1PA14 LINE L1 5930 6161 0 6235 85 20 2 chr1 11175761 11176620 -231487733 + L1PA13 LINE L1 5271 6144 -19 693 0 0 0 chr1 11176625 11176702 -231487651 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 196 231 31 31 chr1 11176702 11176761 -231487592 + MIR SINE MIR 198 256 -6 441 276 144 52 chr1 11177467 11177848 -231486505 + LTR16A LTR ERVL 25 440 -10 503 312 138 32 chr1 11178453 11179248 -231485105 - L2 LINE L2 -38 3275 2382 1649 199 51 74 chr1 11179256 11179729 -231484624 + MLT1C LTR MaLR 6 467 0 2351 104 0 0 chr1 11180902 11181209 -231483144 - AluSc SINE Alu -2 307 1 488 179 38 0 chr1 11181219 11181325 -231483028 - L1MB8 LINE L1 -1 6177 6068 1560 101 0 0 chr1 11182220 11182418 -231481935 + AluY SINE Alu 105 302 -9 321 274 52 22 chr1 11182560 11182695 -231481658 + LTR67 LTR ERVL 419 557 0 306 304 20 29 chr1 11182823 11182925 -231481428 - LTR67 LTR ERVL -344 213 113 1916 148 21 10 chr1 11183593 11183884 -231480469 + AluJb SINE Alu 1 294 -18 371 311 87 71 chr1 11183888 11183951 -231480402 + HAL1 LINE L1 10 70 -2437 2262 107 3 0 chr1 11183951 11184242 -231480111 - AluSx SINE Alu -18 294 3 371 311 87 71 chr1 11184242 11184728 -231479625 + HAL1 LINE L1 70 568 -1939 281 251 69 86 chr1 11184802 11184977 -231479376 + HAL1 LINE L1 699 870 -1637 442 244 208 5 chr1 11184992 11185189 -231479164 + MIR SINE MIR 11 247 -15 1236 280 138 52 chr1 11185272 11185353 -231479000 + HAL1 LINE L1 991 1064 -1443 2257 117 0 3 chr1 11185353 11185653 -231478700 + AluSq SINE Alu 1 299 -14 1236 280 138 52 chr1 11185653 11186681 -231477672 + HAL1 LINE L1 1064 2195 -312 610 184 0 0 chr1 11186728 11186826 -231477527 + MER2 DNA MER2_type 2 99 -246 315 223 121 48 chr1 11186948 11187114 -231477239 + HAL1 LINE L1 2317 2494 -13 382 308 101 20 chr1 11187233 11187431 -231476922 - MIR SINE MIR -17 245 32 521 363 29 12 chr1 11187537 11187777 -231476576 + MLT1I LTR MaLR 1 244 -165 6612 176 8 33 chr1 11187803 11189594 -231474759 + L1PA14 LINE L1 4106 5942 -219 1601 139 119 32 chr1 11189594 11189939 -231474414 - THE1C LTR MaLR 0 375 1 10020 121 16 36 chr1 11189939 11191549 -231472804 - THE1C-int LTR MaLR 0 1580 3 1664 169 67 25 chr1 11191551 11191911 -231472442 - THE1C LTR MaLR 0 375 1 6612 176 8 33 chr1 11191911 11192189 -231472164 + L1PA14 LINE L1 5942 6158 -3 638 173 80 49 chr1 11192232 11192394 -231471959 + L1MC5 LINE L1 6668 6834 -1127 * 3167 177 78 35 chr1 11192375 11192680 -231471673 + L1MD1 LINE L1 1747 2037 -4503 2102 198 33 54 chr1 11192680 11193196 -231471157 + MLT1D LTR MaLR 1 505 0 3167 177 78 35 chr1 11193196 11193702 -231470651 + L1MD1 LINE L1 2037 2593 -3947 526 242 28 11 chr1 11193717 11193899 -231470454 + L1MD1 LINE L1 2827 3011 -3529 1794 149 21 24 chr1 11193903 11194231 -231470122 - THE1C LTR MaLR 0 375 49 2157 134 39 22 chr1 11194231 11194589 -231469764 - THE1B LTR MaLR 0 364 1 2216 109 3 0 chr1 11194589 11194900 -231469453 - THE1B-int LTR MaLR 0 1580 1269 939 266 48 25 chr1 11194929 11195365 -231468988 - Charlie7 DNA MER1_type -187 2425 1980 561 182 48 53 chr1 11195369 11195543 -231468810 + MER6 DNA MER2_type -64 838 -27 9602 108 2 2 chr1 11195543 11196826 -231467527 - THE1B-int LTR MaLR -296 1284 1 2435 135 28 6 chr1 11196826 11197182 -231467171 - THE1B LTR MaLR 0 364 1 384 109 0 0 chr1 11197182 11197237 -231467116 - MSTA LTR MaLR -373 55 1 10240 126 34 5 chr1 11197237 11198773 -231465580 - THE1C-int LTR MaLR 0 1580 1 1984 141 24 29 chr1 11198773 11199150 -231465203 - THE1C LTR MaLR 0 375 1 5548 220 63 59 chr1 11199150 11200806 -231463547 + L1MD1 LINE L1 3014 4681 -1859 2274 95 0 10 chr1 11200806 11201101 -231463252 + AluSg SINE Alu 1 292 -18 5548 220 63 59 chr1 11201101 11201533 -231462820 + L1MD1 LINE L1 4681 5110 -1430 510 345 17 0 chr1 11201556 11201794 -231462559 + L1PA15 LINE L1 8 249 -7332 2085 186 61 19 chr1 11201807 11202279 -231462074 + LTR22B LTR ERVK 1 492 0 4255 209 18 5 chr1 11202279 11203324 -231461029 + L1PA15 LINE L1 3135 5053 -2531 365 159 0 29 chr1 11203324 11203393 -231460960 + THE1C LTR MaLR 1 67 -308 1571 147 38 24 chr1 11203432 11203724 -231460629 - THE1C LTR MaLR 0 375 80 8912 168 26 6 chr1 11203746 11205603 -231458750 + L1PA15 LINE L1 5082 6967 -636 3556 39 0 5 chr1 11205608 11206078 -231458275 - L1PA3 LINE L1 0 6155 5727 285 256 66 8 chr1 11206317 11206438 -231457915 + MIR SINE MIR 65 192 -70 4144 139 2 5 chr1 11206647 11207285 -231457068 + L1PA15 LINE L1 6952 7587 -16 2509 42 0 0 chr1 11207285 11207597 -231456756 - AluY SINE Alu 0 312 1 2017 140 0 4 chr1 11207634 11207912 -231456441 + AluSx SINE Alu 1 277 -35 844 76 0 23 chr1 11207912 11208044 -231456309 + (GGAA)n Simple_repeat Simple_repeat 4 132 0 3652 189 85 51 chr1 11208129 11209207 -231455146 + L1MD1 LINE L1 5172 6309 -327 1915 145 0 44 chr1 11209207 11209524 -231454829 + AluJo SINE Alu 1 303 -9 3652 189 85 51 chr1 11209524 11209825 -231454528 + L1MD1 LINE L1 6309 6598 -38 238 159 0 32 chr1 11209861 11209924 -231454429 + L1MD2 LINE L1 6298 6358 -1 * 285 309 132 23 chr1 11209906 11210126 -231454227 + L1ME3A LINE L1 5927 6170 0 557 247 62 19 chr1 11210138 11210300 -231454053 + MLT1I LTR MaLR 240 408 -1 1284 209 13 57 chr1 11210475 11210790 -231453563 + MLT1B LTR MaLR 8 308 -82 603 162 0 10 chr1 11211611 11211710 -231452643 + MER4A LTR ERV1 1 98 -566 1831 121 161 75 chr1 11211710 11212082 -231452271 + MER4A LTR ERV1 261 664 0 2327 100 0 10 chr1 11212393 11212704 -231451649 + AluSx SINE Alu 1 308 -4 197 261 62 15 chr1 11212720 11212785 -231451568 - L3 LINE CR1 -211 1366 1299 182 284 57 34 chr1 11214174 11214262 -231450091 + MIR SINE MIR 84 173 -89 548 239 84 7 chr1 11214553 11214708 -231449645 - MIR SINE MIR -35 227 61 2421 87 3 0 chr1 11214763 11215063 -231449290 + AluSq SINE Alu 1 301 -12 696 201 39 22 chr1 11215906 11216085 -231448268 + MER53 DNA DNA 1 182 -7 402 307 214 7 chr1 11216352 11216811 -231447542 - L2 LINE L2 -39 3274 2708 315 330 0 0 chr1 11216856 11216947 -231447406 - MER96 DNA MER1_type? 0 175 85 223 310 84 7 chr1 11218325 11218467 -231445886 - MIR SINE MIR -63 199 47 303 305 153 11 chr1 11218701 11218878 -231445475 + MIR SINE MIR 47 248 -14 200 184 0 41 chr1 11219226 11219275 -231445078 + L2 LINE L2 3030 3076 -196 1985 162 180 34 chr1 11219538 11219949 -231444404 + MLT2B1 LTR ERVL 4 486 -34 198 118 0 0 chr1 11219949 11219983 -231444370 + (TA)n Simple_repeat Simple_repeat 2 35 0 1985 162 180 34 chr1 11219983 11220016 -231444337 + MLT2B1 LTR ERVL 486 513 -7 3353 199 32 28 chr1 11220277 11220889 -231443464 + L1MB8 LINE L1 5449 6066 -112 2584 47 3 0 chr1 11220889 11221186 -231443167 + AluY SINE Alu 1 298 -13 3353 199 32 28 chr1 11221186 11221300 -231443053 + L1MB8 LINE L1 6066 6178 0 195 129 0 0 chr1 11223321 11223352 -231441001 + (CACG)n Simple_repeat Simple_repeat 1 31 0 1214 261 86 59 chr1 11223555 11223927 -231440426 - L1ME3A LINE L1 -5 6165 5772 2494 69 10 0 chr1 11223927 11224232 -231440121 + AluY SINE Alu 1 308 -3 1214 261 86 59 chr1 11224232 11224404 -231439949 - L1ME3A LINE L1 -398 5772 5606 521 292 14 0 chr1 11224412 11224556 -231439797 - L1ME LINE L1 -468 5702 5557 383 241 48 54 chr1 11224576 11224742 -231439611 - MIR SINE MIR -78 184 20 2023 104 11 24 chr1 11224852 11225187 -231439166 + AluSx SINE Alu 1 331 0 215 226 0 19 chr1 11225259 11225312 -231439041 + (CTA)n Simple_repeat Simple_repeat 1 52 0 601 254 0 30 chr1 11225333 11225502 -231438851 - MIR SINE MIR 0 262 99 192 262 0 0 chr1 11226489 11226531 -231437822 + MIR SINE MIR 33 74 -134 1728 179 18 34 chr1 11226648 11227028 -231437325 + MLT1A2 LTR MaLR 1 374 0 34 0 0 0 chr1 11227042 11227076 -231437277 + AT_rich Low_complexity Low_complexity 1 34 0 226 219 94 43 chr1 11227579 11227704 -231436649 + MIR3 SINE MIR 52 186 -22 2346 79 3 28 chr1 11227934 11228251 -231436102 + AluSc SINE Alu 1 309 0 1824 83 0 4 chr1 11228671 11228901 -231435452 - AluY SINE Alu -82 229 1 1231 152 20 53 chr1 11229301 11229545 -231434808 - MER46A DNA MER2_type 0 236 1 851 248 66 0 chr1 11229663 11229889 -231434464 - MIR SINE MIR 0 262 22 259 227 299 0 chr1 11230265 11230362 -231433991 + MLT1I LTR MaLR 9 134 -275 21 0 0 0 chr1 11230904 11230925 -231433428 + AT_rich Low_complexity Low_complexity 1 21 0 535 294 73 45 chr1 11230948 11231193 -231433160 + L2 LINE L2 2973 3224 -48 2195 94 0 18 chr1 11231207 11231493 -231432860 + AluSx SINE Alu 1 311 0 208 100 0 0 chr1 11231493 11231523 -231432830 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 560 264 28 7 chr1 11231550 11231694 -231432659 - MIR SINE MIR -24 238 92 810 204 94 5 chr1 11231908 11232099 -231432254 + MER20 DNA MER1_type 2 209 -10 298 285 23 46 chr1 11232967 11233097 -231431256 - MIR SINE MIR -46 216 90 265 299 46 0 chr1 11233350 11233437 -231430916 + MIR SINE MIR 56 146 -116 269 252 26 122 chr1 11233600 11233715 -231430638 + MIR SINE MIR 43 146 -62 323 316 22 7 chr1 11233938 11234077 -231430276 + L2 LINE L2 2251 2391 -923 244 293 79 65 chr1 11234295 11234510 -231429843 + L2 LINE L2 2486 2703 -611 252 294 93 60 chr1 11234608 11235026 -231429327 + L2 LINE L2 2844 3275 -38 2311 95 3 0 chr1 11235421 11235716 -231428637 - AluSx SINE Alu -16 296 1 2611 71 0 0 chr1 11235825 11236136 -231428217 + AluY SINE Alu 1 311 0 1485 189 53 47 chr1 11236456 11236816 -231427537 + MLT1A2 LTR MaLR 1 362 -12 181 286 156 13 chr1 11236820 11236897 -231427456 - MIR SINE MIR -154 108 21 410 312 153 29 chr1 11236906 11237428 -231426925 + L2 LINE L2 2169 2755 -559 473 253 156 0 chr1 11237541 11237695 -231426658 + MER5B DNA MER1_type 1 178 0 312 290 90 41 chr1 11237792 11237937 -231426416 + L2 LINE L2 3121 3272 0 2270 40 98 0 chr1 11238135 11238409 -231425944 - AluY SINE Alu -10 301 1 855 293 89 14 chr1 11238946 11239315 -231425038 + L2 LINE L2 2914 3310 -3 281 224 15 0 chr1 11239702 11239769 -231424584 - L2 LINE L2 -346 2967 2900 1356 266 180 21 chr1 11239828 11240674 -231423679 - L2 LINE L2 -575 2739 1760 351 362 7 7 chr1 11241261 11241402 -231422951 + MIR3 SINE MIR 18 158 -50 544 319 14 47 chr1 11241421 11241668 -231422685 - MIR SINE MIR -9 253 11 517 299 0 0 chr1 11241816 11241950 -231422403 - MER5B DNA MER1_type 0 178 45 382 227 52 10 chr1 11241981 11242078 -231422275 + MER5A DNA MER1_type 6 106 -83 283 316 70 51 chr1 11242455 11242613 -231421740 - MIR SINE MIR -71 191 31 216 330 52 0 chr1 11242956 11243053 -231421300 - MIR3 SINE MIR -23 185 84 370 297 55 0 chr1 11243194 11243322 -231421031 + L2 LINE L2 3138 3272 0 946 241 55 14 chr1 11244901 11245121 -231419232 - MIR SINE MIR -1 261 33 226 330 39 0 chr1 11245140 11245243 -231419110 + MER103 DNA DNA 48 154 -12 206 180 20 60 chr1 11245728 11245778 -231418575 + L2 LINE L2 3202 3249 -23 613 262 144 33 chr1 11245945 11246508 -231417845 + L2 LINE L2 1179 3281 -32 243 0 0 0 chr1 11246528 11246555 -231417798 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2536 67 0 3 chr1 11247158 11247457 -231416896 - AluSq SINE Alu -15 298 1 263 250 201 25 chr1 11248778 11248898 -231415455 - MER5A DNA MER1_type -14 175 24 1932 171 13 0 chr1 11249846 11250145 -231414208 - AluJo SINE Alu -9 303 1 230 299 66 29 chr1 11250586 11250723 -231413630 - MER117 DNA MER1_type -8 189 48 834 211 41 6 chr1 11251183 11251354 -231412999 + MIR SINE MIR 36 212 -50 321 300 54 46 chr1 11251987 11252117 -231412236 - MIR SINE MIR -79 183 53 744 259 59 39 chr1 11252120 11252406 -231411947 - L2 LINE L2 -5 3308 3017 1032 151 161 5 chr1 11252697 11252896 -231411457 - MER30 DNA MER1_type 0 230 1 384 251 190 0 chr1 11253642 11253821 -231410532 + MIR SINE MIR 11 223 -39 286 242 156 41 chr1 11255521 11255701 -231408652 + MIR SINE MIR 28 241 -21 258 258 156 47 chr1 11256424 11256552 -231407801 - MER5B DNA MER1_type -19 159 18 384 306 0 9 chr1 11257150 11257261 -231407092 + L2 LINE L2 3185 3294 -19 196 268 169 0 chr1 11257500 11257571 -231406782 - L2 LINE L2 -4 3268 3186 305 274 20 39 chr1 11257638 11257740 -231406613 - MIR3 SINE MIR -27 181 82 35 0 0 0 chr1 11258953 11258988 -231405365 + AT_rich Low_complexity Low_complexity 1 35 0 2534 70 0 10 chr1 11260483 11260795 -231403558 + AluY SINE Alu 3 311 0 201 267 113 47 chr1 11263035 11263185 -231401168 - MIR3 SINE MIR -48 160 1 342 171 0 0 chr1 11265601 11265671 -231398682 + GA-rich Low_complexity Low_complexity 3 72 0 261 233 0 0 chr1 11267936 11268026 -231396327 + CT-rich Low_complexity Low_complexity 1 90 0 345 271 65 9 chr1 11268378 11268485 -231395868 - L2 LINE L2 0 3313 3201 2545 285 120 29 chr1 11268896 11270192 -231394161 - L2 LINE L2 -252 3061 1650 245 322 128 77 chr1 11270349 11270647 -231393706 - L2 LINE L2 -14 3258 2946 2531 41 30 3 chr1 11271629 11271924 -231392429 - AluY SINE Alu -8 303 1 375 279 30 24 chr1 11272667 11272832 -231391521 - L1ME3A LINE L1 -14 6156 5991 1767 181 10 10 chr1 11272879 11273189 -231391164 - AluJo SINE Alu -2 310 1 209 139 23 0 chr1 11273561 11273604 -231390749 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 2544 57 3 0 chr1 11274870 11275169 -231389184 - AluY SINE Alu -11 300 1 990 227 23 9 chr1 11276552 11276768 -231387585 - MER20 DNA MER1_type 0 219 1 192 252 211 32 chr1 11277065 11277188 -231387165 - MIR3 SINE MIR -23 185 41 270 357 0 10 chr1 11277837 11277935 -231386418 - MIR SINE MIR -64 144 48 2310 100 0 13 chr1 11277935 11278236 -231386117 + AluSq SINE Alu 1 297 -16 2495 58 0 19 chr1 11278236 11278544 -231385809 + AluY SINE Alu 1 302 -9 1608 165 13 53 chr1 11278621 11278924 -231385429 - AluJo SINE Alu -20 292 2 1736 149 26 46 chr1 11279013 11279315 -231385038 + AluJo SINE Alu 1 296 -16 2288 97 0 3 chr1 11280854 11281154 -231383199 + AluSg SINE Alu 1 299 -11 215 273 91 30 chr1 11284413 11284512 -231379841 + MIR SINE MIR 146 250 -12 476 297 87 10 chr1 11285854 11286049 -231378304 - MIR SINE MIR -32 230 21 21 0 0 0 chr1 11287435 11287456 -231376897 + AT_rich Low_complexity Low_complexity 1 21 0 2347 82 3 13 chr1 11288153 11288457 -231375896 - AluSx SINE Alu -11 301 1 198 0 0 0 chr1 11288818 11288840 -231375513 + (A)n Simple_repeat Simple_repeat 1 22 0 374 226 59 20 chr1 11289680 11289782 -231374571 + MIR SINE MIR 81 186 -76 2391 64 0 38 chr1 11290336 11290649 -231373704 - AluY SINE Alu -10 301 1 682 180 0 0 chr1 11290705 11290816 -231373537 + FLAM_A SINE Alu 20 130 -12 258 317 15 0 chr1 11292128 11292196 -231372157 + MIR SINE MIR 43 110 -105 386 279 180 20 chr1 11292519 11292763 -231371590 + L2 LINE L2 3025 3307 -6 246 268 21 120 chr1 11293696 11293838 -231370515 - MIR SINE MIR -64 198 71 21 0 0 0 chr1 11294114 11294135 -231370218 + AT_rich Low_complexity Low_complexity 1 21 0 304 117 67 33 chr1 11294434 11294494 -231369859 - L2 LINE L2 -2 3311 3250 406 218 23 11 chr1 11294548 11294635 -231369718 + L2 LINE L2 3185 3272 0 222 174 0 0 chr1 11294637 11294683 -231369670 + G-rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 11295072 11295093 -231369260 + AT_rich Low_complexity Low_complexity 1 21 0 198 91 0 0 chr1 11296210 11296243 -231368110 + (A)n Simple_repeat Simple_repeat 1 33 0 37 99 0 0 chr1 11297004 11297125 -231367228 + GC_rich Low_complexity Low_complexity 1 121 0 24 67 0 0 chr1 11297308 11297353 -231367000 + GC_rich Low_complexity Low_complexity 1 45 0 27 87 0 0 chr1 11297368 11297437 -231366916 + GC_rich Low_complexity Low_complexity 1 69 0 812 197 129 28 chr1 11298120 11298823 -231365530 + L1MD3 LINE L1 7024 7885 -110 195 42 0 0 chr1 11298825 11298849 -231365504 + (T)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr1 11298988 11299023 -231365330 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr1 11299146 11299171 -231365182 + AT_rich Low_complexity Low_complexity 1 25 0 1767 177 0 16 chr1 11299765 11300117 -231364236 + AluJb SINE Alu 4 312 0 33 0 0 0 chr1 11300393 11300426 -231363927 + AT_rich Low_complexity Low_complexity 1 33 0 720 282 160 62 chr1 11300674 11300896 -231363457 + L2 LINE L2 2642 2841 -472 2308 94 3 3 chr1 11300896 11301193 -231363160 + AluSg SINE Alu 1 297 -13 720 282 160 62 chr1 11301193 11301567 -231362786 + L2 LINE L2 2841 3312 -1 679 268 82 39 chr1 11301921 11302152 -231362201 - MIR SINE MIR -18 244 4 810 210 84 88 chr1 11302164 11302426 -231361927 - MIR SINE MIR 0 262 2 2463 78 0 3 chr1 11303192 11303501 -231360852 - AluY SINE Alu -3 308 1 1682 185 7 3 chr1 11304119 11304417 -231359936 + AluJb SINE Alu 3 301 -11 405 0 0 0 chr1 11304853 11304898 -231359455 + (CA)n Simple_repeat Simple_repeat 2 46 0 348 301 141 0 chr1 11305862 11306018 -231358335 - MIR SINE MIR -37 225 48 228 289 53 0 chr1 11306074 11306150 -231358203 - MIR SINE MIR -7 255 176 453 282 63 57 chr1 11306753 11307069 -231357284 + L1ME LINE L1 5502 5819 -302 2394 77 0 6 chr1 11307271 11307583 -231356770 + AluY SINE Alu 1 310 -1 185 349 0 0 chr1 11308753 11308816 -231355537 + L2 LINE L2 3251 3313 0 1543 184 61 0 chr1 11309124 11309417 -231354936 - MER58B DNA MER1_type 0 341 31 951 237 39 93 chr1 11309837 11310197 -231354156 + L1ME4a LINE L1 5467 5786 -335 1881 128 25 50 chr1 11310197 11310517 -231353836 + AluJb SINE Alu 1 312 0 951 237 39 93 chr1 11310517 11310822 -231353531 + L1ME4a LINE L1 5786 6106 -15 1330 176 9 9 chr1 11310839 11311072 -231353281 + L1MC1 LINE L1 6100 6332 -1 273 300 138 8 chr1 11312937 11313067 -231351286 - MIR SINE MIR -73 189 43 236 293 35 0 chr1 11314543 11314601 -231349752 + MIR SINE MIR 89 148 -60 191 270 111 0 chr1 11315008 11315071 -231349282 - L2 LINE L2 -2 3270 3201 261 75 0 0 chr1 11315265 11315305 -231349048 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 327 69 44 chr1 11317406 11317565 -231346788 - MIR SINE MIR -13 249 87 281 304 76 19 chr1 11318237 11318395 -231345958 + L2 LINE L2 3095 3261 -52 2227 82 29 0 chr1 11319069 11319348 -231345005 + AluSx SINE Alu 6 292 -20 195 254 36 0 chr1 11320088 11320143 -231344210 - L2 LINE L2 -2 3270 3214 330 158 53 0 chr1 11320349 11320425 -231343928 - MIR SINE MIR -10 252 173 610 279 135 9 chr1 11320430 11320659 -231343694 - MIR SINE MIR 0 262 5 301 289 78 0 chr1 11320669 11320759 -231343594 - MIR SINE MIR -154 108 12 894 198 104 5 chr1 11320784 11320986 -231343367 + Charlie1 DNA MER1_type 20 241 -2520 485 269 17 0 chr1 11320991 11321110 -231343243 + L1MD3 LINE L1 7804 7924 -71 2233 107 0 0 chr1 11321114 11321405 -231342948 + AluSx SINE Alu 1 291 -21 288 221 19 29 chr1 11321429 11321533 -231342820 + Charlie1 DNA MER1_type 2592 2694 -67 2121 77 8 0 chr1 11321861 11322121 -231342232 + AluSc SINE Alu 36 297 -12 339 275 166 13 chr1 11323337 11323566 -231340787 - L2 LINE L2 -198 3115 2852 202 396 45 9 chr1 11324422 11324533 -231339820 - L2 LINE L2 -632 2682 2568 739 243 53 5 chr1 11324588 11324794 -231339559 - MIR SINE MIR 0 262 47 25 65 0 0 chr1 11325183 11325229 -231339124 + AT_rich Low_complexity Low_complexity 1 46 0 1055 278 46 9 chr1 11325414 11325741 -231338612 + L1ME2 LINE L1 5816 6154 -10 461 293 0 14 chr1 11325856 11325996 -231338357 + MIR SINE MIR 125 262 0 205 250 186 19 chr1 11326073 11326229 -231338124 + L2 LINE L2 2708 2889 -425 207 286 42 67 chr1 11327093 11327212 -231337141 + L2 LINE L2 2648 2763 -551 547 275 55 59 chr1 11327251 11327487 -231336866 + L2 LINE L2 2871 3105 -208 1992 122 7 0 chr1 11327983 11328277 -231336076 - AluSx SINE Alu -16 296 1 229 289 0 19 chr1 11330245 11330297 -231334056 + MIR SINE MIR 22 72 -190 604 278 0 40 chr1 11330673 11330849 -231333504 - MER58B DNA MER1_type -1 340 172 4964 240 27 13 chr1 11331045 11332396 -231331957 + L1P LINE L1 3880 5248 -898 279 347 0 0 chr1 11332477 11332624 -231331729 + C-rich Low_complexity Low_complexity 1 147 0 222 261 254 63 chr1 11333306 11333448 -231330905 + MIR3 SINE MIR 33 201 -7 1885 179 18 34 chr1 11333465 11333845 -231330508 + MLT1A2 LTR MaLR 1 374 0 34 0 0 0 chr1 11333859 11333893 -231330460 + AT_rich Low_complexity Low_complexity 1 34 0 575 320 148 21 chr1 11334471 11334992 -231329361 - L2 LINE L2 -559 2755 2169 1417 189 53 47 chr1 11335082 11335442 -231328911 - MLT1A2 LTR MaLR -12 362 1 2222 76 6 31 chr1 11335765 11336082 -231328271 - AluSc SINE Alu 0 309 1 261 251 91 37 chr1 11336312 11336437 -231327916 - MIR3 SINE MIR -22 186 52 448 294 48 0 chr1 11387078 11387204 -231277149 - MIR SINE MIR -12 250 119 726 222 0 26 chr1 11390328 11390481 -231273872 - AluSc SINE Alu -17 292 144 1446 200 3 52 chr1 11390556 11390744 -231273609 - AluJb SINE Alu -13 299 130 1858 153 0 39 chr1 11390744 11391051 -231273302 + AluSx SINE Alu 1 295 -17 1446 200 3 52 chr1 11391051 11391172 -231273181 - AluJb SINE Alu -182 130 5 1542 193 10 24 chr1 11391747 11392043 -231272310 + AluSx SINE Alu 5 296 -16 2807 206 59 5 chr1 11392413 11392985 -231271368 + LTR26 LTR ERV1 1 603 0 2846 209 60 2 chr1 11393254 11393824 -231270529 + LTR26 LTR ERV1 1 603 0 465 230 8 8 chr1 11393962 11394088 -231270265 + MER65A LTR ERV1 215 340 -105 931 197 160 17 chr1 11394308 11394602 -231269751 + LTR44 LTR ERV1 1 336 -183 328 100 0 0 chr1 11394690 11394740 -231269613 + Alu SINE Alu 249 298 -2 1946 161 3 10 chr1 11394740 11395051 -231269302 + AluSc SINE Alu 1 309 0 1966 149 3 3 chr1 11395419 11395737 -231268616 - AluSc SINE Alu 0 318 1 21 0 0 0 chr1 11395815 11395836 -231268517 + AT_rich Low_complexity Low_complexity 1 21 0 2088 142 3 0 chr1 11395839 11396142 -231268211 - AluSq SINE Alu -9 304 1 1812 155 7 17 chr1 11397165 11397302 -231267051 + AluSx SINE Alu 1 138 -174 2189 84 0 0 chr1 11397302 11397575 -231266778 + AluY SINE Alu 35 307 -4 1812 155 7 17 chr1 11397575 11397733 -231266620 + AluSx SINE Alu 138 293 -19 2024 140 13 3 chr1 11401002 11401309 -231263044 + AluSg SINE Alu 1 310 0 1386 214 0 37 chr1 11401313 11401657 -231262696 + AluJb SINE Alu 1 333 0 723 195 8 0 chr1 11401738 11401861 -231262492 + FLAM_C SINE Alu 2 125 -18 1465 197 14 10 chr1 11401945 11402234 -231262119 + AluSx SINE Alu 5 294 -18 12131 100 15 8 chr1 11402587 11405314 -231259039 + L1PA7 LINE L1 3384 6134 -20 2343 99 0 10 chr1 11405472 11405776 -231258577 - AluY SINE Alu -10 301 1 1090 173 50 117 chr1 11405778 11406033 -231258320 + MER82 DNA MER2_type 22 250 -403 839 154 23 0 chr1 11406033 11406163 -231258190 - FLAM_C SINE Alu 0 133 1 1090 173 50 117 chr1 11406163 11406248 -231258105 + MER82 DNA MER2_type 250 339 -314 2216 110 7 10 chr1 11406263 11406571 -231257782 - AluSg1 SINE Alu -1 308 2 342 316 45 65 chr1 11406875 11406948 -231257405 - L2 LINE L2 0 3272 3199 1943 158 0 3 chr1 11406948 11407245 -231257108 + AluSx SINE Alu 1 296 -16 2315 110 0 7 chr1 11407245 11407554 -231256799 + AluSx SINE Alu 1 308 -4 342 316 45 65 chr1 11407554 11407634 -231256719 - L2 LINE L2 -71 3201 3121 577 115 0 0 chr1 11407658 11407736 -231256617 + AluSq/x SINE Alu 49 126 -186 413 169 12 0 chr1 11407737 11407820 -231256533 + AluS SINE Alu 228 311 0 2401 100 3 0 chr1 11407879 11408189 -231256164 - AluSp SINE Alu -2 311 1 2218 106 7 3 chr1 11408201 11408502 -231255851 - AluSx SINE Alu -10 302 1 685 219 19 32 chr1 11408545 11408700 -231255653 + MIR SINE MIR 89 241 -21 1034 187 0 0 chr1 11408744 11408910 -231255443 - AluJb SINE Alu -17 295 130 1936 81 0 4 chr1 11409686 11409921 -231254432 - AluY SINE Alu -77 234 1 2207 121 0 3 chr1 11409922 11410228 -231254125 - AluSq SINE Alu -8 305 1 2171 71 49 0 chr1 11410239 11410506 -231253847 - AluY SINE Alu -11 300 21 1475 243 136 21 chr1 11410557 11411043 -231253310 + MLT1F LTR MaLR 1 542 0 2440 62 0 3 chr1 11411099 11411388 -231252965 + AluY SINE Alu 7 294 -17 1389 137 12 32 chr1 11411391 11411639 -231252714 - MLT2B3 LTR ERVL -311 243 1 398 257 126 14 chr1 11411655 11411869 -231252484 - L2 LINE L2 -232 3081 2844 191 326 53 0 chr1 11412244 11412339 -231252014 - L2 LINE L2 -23 3290 3191 2222 108 10 0 chr1 11412893 11413189 -231251164 + AluSx SINE Alu 1 299 -13 208 275 62 0 chr1 11413855 11413935 -231250418 - MIR SINE MIR -119 143 59 1133 121 24 0 chr1 11415004 11415169 -231249184 - AluY SINE Alu 0 311 143 270 268 21 0 chr1 11415299 11415396 -231248957 + (TA)n Simple_repeat Simple_repeat 2 100 0 2241 98 3 3 chr1 11415466 11415761 -231248592 + AluY SINE Alu 2 296 -15 748 131 0 0 chr1 11415766 11415873 -231248480 + U6 snRNA snRNA 1 107 0 4794 92 8 3 chr1 11415873 11416536 -231247817 + L1PA7 LINE L1 5483 6148 -6 2376 212 117 9 chr1 11416685 11417335 -231247018 - L1MC1 LINE L1 -13 6320 5601 276 184 161 11 chr1 11417380 11417467 -231246886 + L2 LINE L2 3163 3262 -10 998 262 61 22 chr1 11418275 11418634 -231245719 - MER49 LTR ERV1 -1 922 550 503 161 0 113 chr1 11418632 11418724 -231245629 + MER4E LTR ERV1 38 139 -640 * 2076 133 3 0 chr1 11418724 11419010 -231245343 + AluSp SINE Alu 1 287 -26 266 65 0 22 chr1 11419013 11419059 -231245294 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 503 161 0 113 chr1 11419059 11419086 -231245267 + MER4E LTR ERV1 141 147 -632 22 35 0 0 chr1 11421567 11421596 -231242757 + AT_rich Low_complexity Low_complexity 1 29 0 605 231 0 0 chr1 11421601 11421718 -231242635 - FLAM_C SINE Alu -24 119 3 261 0 0 0 chr1 11422125 11422154 -231242199 + (A)n Simple_repeat Simple_repeat 1 29 0 1375 186 8 0 chr1 11422166 11422414 -231241939 - AluSx SINE Alu -45 267 18 1749 270 130 10 chr1 11423092 11423894 -231240459 + MER52A LTR ERV1 56 1104 -174 1462 260 17 6 chr1 11423895 11424253 -231240100 + MER52A LTR ERV1 1392 1753 -2 624 252 19 8 chr1 11424253 11424533 -231239820 + L1M1 LINE L1 3442 3724 -3841 720 248 0 12 chr1 11424533 11424694 -231239659 + AluJb SINE Alu 153 311 -1 225 279 13 63 chr1 11424782 11424861 -231239492 + L2 LINE L2 3219 3293 -20 849 72 0 72 chr1 11424864 11425024 -231239329 - AluSp/q SINE Alu 0 313 186 919 170 23 18 chr1 11428185 11428356 -231235997 - AluSx SINE Alu -15 295 124 1727 49 22 4 chr1 11428356 11428581 -231235772 - L1PA4 LINE L1 -4 6151 5923 340 64 0 0 chr1 11428581 11428628 -231235725 + L1PA4 LINE L1 5885 5931 -223 972 141 0 0 chr1 11428628 11428763 -231235590 - AluSx SINE Alu -177 135 1 1497 114 9 5 chr1 11428936 11429147 -231235206 - AluSq SINE Alu -101 212 1 1847 123 4 14 chr1 11429266 11429542 -231234811 - AluSx SINE Alu -39 273 1 346 115 0 0 chr1 11429551 11429603 -231234750 - Alu SINE Alu -249 53 2 291 276 104 15 chr1 11429935 11430069 -231234284 - MIR SINE MIR 0 262 117 1518 170 51 20 chr1 11430810 11431104 -231233249 + AluJo SINE Alu 1 303 -9 1714 166 7 33 chr1 11431104 11431405 -231232948 + AluSp SINE Alu 1 294 -19 2053 156 0 0 chr1 11432655 11432962 -231231391 + AluSx SINE Alu 1 307 -5 1194 125 0 0 chr1 11433445 11433605 -231230748 + AluSx SINE Alu 1 160 -152 182 230 27 81 chr1 11434283 11434357 -231229996 + L2 LINE L2 3202 3271 -1 2450 48 10 7 chr1 11435912 11436207 -231228146 + AluY SINE Alu 1 296 -15 2094 129 3 3 chr1 11436322 11436631 -231227722 + AluSx SINE Alu 1 309 -3 1401 240 0 7 chr1 11436766 11437074 -231227279 + AluJb SINE Alu 1 306 -6 1311 220 10 45 chr1 11437159 11437294 -231227059 + AluJo SINE Alu 1 139 -163 2059 147 3 13 chr1 11437294 11437430 -231226923 + AluSx SINE Alu 1 137 -175 2522 60 0 0 chr1 11437430 11437732 -231226621 + AluY SINE Alu 1 302 -9 2059 147 3 13 chr1 11437732 11437907 -231226446 + AluSx SINE Alu 137 309 -3 1311 220 10 45 chr1 11437907 11438084 -231226269 + AluJo SINE Alu 139 302 0 2386 105 0 0 chr1 11438133 11438437 -231225916 + AluSg SINE Alu 1 304 -6 1088 149 0 0 chr1 11438750 11438911 -231225442 - AluSp SINE Alu -15 298 138 2292 103 0 3 chr1 11439470 11439770 -231224583 + AluSc SINE Alu 1 299 -10 2252 85 7 0 chr1 11439784 11440065 -231224288 + AluY SINE Alu 1 283 -28 207 0 0 0 chr1 11440068 11440091 -231224262 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2254 110 7 0 chr1 11440121 11440422 -231223931 + AluSg SINE Alu 1 303 -7 664 228 36 30 chr1 11440430 11440597 -231223756 + AluSg/x SINE Alu 142 309 -3 195 42 0 0 chr1 11440813 11440837 -231223516 + (GGCTG)n Simple_repeat Simple_repeat 2 25 0 631 211 91 24 chr1 11440914 11441123 -231223230 + MER65A LTR ERV1 211 433 -12 2062 150 6 10 chr1 11441282 11441595 -231222758 + AluSx SINE Alu 1 312 0 1449 181 70 7 chr1 11441595 11442049 -231222304 + LTR44 LTR ERV1 7 519 0 1626 191 11 0 chr1 11442091 11442388 -231221965 + AluJb SINE Alu 7 306 0 1749 115 4 0 chr1 11442388 11442623 -231221730 + AluSp SINE Alu 1 236 -77 183 42 0 0 chr1 11442728 11442752 -231221601 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 846 151 0 8 chr1 11442754 11442880 -231221473 - FRAM SINE Alu -18 158 34 1720 156 3 62 chr1 11443049 11443370 -231220983 + AluJb SINE Alu 11 312 0 2035 148 3 0 chr1 11443452 11443749 -231220604 + AluSx SINE Alu 1 298 -14 1982 144 11 0 chr1 11443831 11444116 -231220237 - AluSx SINE Alu -24 288 1 647 265 86 97 chr1 11444370 11444543 -231219810 - LTR1B LTR ERV1 -302 524 351 2196 89 0 59 chr1 11444543 11444867 -231219486 + AluSx SINE Alu 2 306 -6 647 265 86 97 chr1 11444867 11445180 -231219173 - LTR1B LTR ERV1 -475 351 43 1428 121 43 0 chr1 11445207 11445414 -231218939 + AluSc SINE Alu 88 303 -6 1879 225 45 73 chr1 11445415 11446083 -231218270 + MER72-int LTR ERV1 6110 6758 0 1148 163 19 54 chr1 11446084 11446097 -231218256 + MER72 LTR ERV1 1 13 -709 2436 75 3 7 chr1 11446097 11446402 -231217951 + AluSg1 SINE Alu 1 304 -5 1148 163 19 54 chr1 11446402 11446646 -231217707 + MER72 LTR ERV1 13 249 -473 285 168 53 116 chr1 11446627 11446677 -231217676 + MER72 LTR ERV1 608 651 -71 * 2189 101 17 0 chr1 11446677 11446973 -231217380 - AluSx SINE Alu -11 301 1 285 168 53 116 chr1 11446973 11447017 -231217336 + MER72 LTR ERV1 651 696 -26 4384 137 31 53 chr1 11447117 11447319 -231217034 - MER4E LTR ERV1 0 779 574 2407 110 0 0 chr1 11447319 11447629 -231216724 + AluSx SINE Alu 2 311 -1 4384 137 31 53 chr1 11447629 11447640 -231216713 - MER4E LTR ERV1 -205 574 564 2037 146 0 19 chr1 11447640 11447956 -231216397 + AluSx SINE Alu 1 310 -2 4384 137 31 53 chr1 11447956 11448537 -231215816 - MER4E LTR ERV1 -215 564 1 2098 128 3 3 chr1 11448705 11449010 -231215343 + AluSx SINE Alu 1 305 -7 350 198 76 58 chr1 11449010 11449182 -231215171 + L1M4 LINE L1 3818 3992 -2154 2285 113 3 13 chr1 11449923 11450234 -231214119 - AluSg SINE Alu -2 308 1 1213 142 6 0 chr1 11450280 11450463 -231213890 - AluSx SINE Alu -8 302 119 2237 115 7 0 chr1 11450498 11450802 -231213551 - AluSg SINE Alu -4 306 1 880 149 0 15 chr1 11450806 11450940 -231213413 - AluSx SINE Alu -181 132 1 1507 148 13 4 chr1 11450951 11451187 -231213166 - AluSg/x SINE Alu -9 303 66 295 203 0 0 chr1 11451187 11451251 -231213102 - AluSc SINE Alu -76 223 160 422 212 258 23 chr1 11451253 11451385 -231212968 + AluJb SINE Alu 8 170 -142 2037 140 20 0 chr1 11451480 11451773 -231212580 + AluSx SINE Alu 1 299 -13 1473 197 14 10 chr1 11451862 11452151 -231212202 - AluSx SINE Alu -18 294 5 647 239 49 0 chr1 11452216 11452358 -231211995 - AluJo SINE Alu -162 150 2 1396 220 0 35 chr1 11452439 11452753 -231211600 - AluJb SINE Alu -9 303 1 1996 139 14 3 chr1 11452764 11453059 -231211294 - AluSg SINE Alu -12 298 1 1332 140 8 47 chr1 11456334 11456569 -231207784 - AluSg/x SINE Alu -2 310 85 777 76 0 3 chr1 11456569 11456734 -231207619 - AluY SINE Alu -62 249 35 918 131 0 7 chr1 11456734 11456871 -231207482 - AluSq/x SINE Alu -176 136 1 263 295 19 0 chr1 11457810 11457915 -231206438 + L1M3f LINE L1 543 649 -4679 639 234 0 0 chr1 11457916 11458023 -231206330 - FLAM_C SINE Alu -34 109 3 11104 38 6 56 chr1 11458037 11459440 -231204913 - SVA Other Other 0 1386 53 243 0 0 0 chr1 11459440 11459467 -231204886 + (GGGAGA)n Simple_repeat Simple_repeat 3 29 0 3655 171 15 59 chr1 11459488 11459537 -231204816 - L1MA4 LINE L1 -6 6294 6244 198 0 0 0 chr1 11459537 11459559 -231204794 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 2077 131 0 0 chr1 11459561 11459844 -231204509 - AluSx SINE Alu -29 283 1 3655 171 15 59 chr1 11459844 11460092 -231204261 - L1MA4 LINE L1 -57 6243 5986 2434 87 3 10 chr1 11460092 11460401 -231203952 - AluY SINE Alu 0 311 5 3655 171 15 59 chr1 11460401 11460732 -231203621 - L1MA4 LINE L1 -314 5986 5706 2184 134 3 3 chr1 11460732 11461045 -231203308 + AluSq SINE Alu 1 313 0 3655 171 15 59 chr1 11461045 11461261 -231203092 - L1MA4 LINE L1 -594 5706 5482 812 203 0 0 chr1 11461268 11461401 -231202952 - FLAM_C SINE Alu 0 133 1 1654 202 7 3 chr1 11461597 11461904 -231202449 - AluJo SINE Alu -4 308 1 1031 121 0 0 chr1 11462120 11462252 -231202101 + AluSq/x SINE Alu 1 132 -180 2259 115 3 0 chr1 11462252 11462556 -231201797 + AluSg SINE Alu 1 305 -5 2210 116 10 0 chr1 11462894 11463204 -231201149 - AluSp SINE Alu 0 313 1 2228 120 0 19 chr1 11463765 11464116 -231200237 + AluSq SINE Alu 1 313 0 2034 137 3 3 chr1 11464171 11464464 -231199889 + AluSc SINE Alu 1 293 -16 482 105 0 20 chr1 11464783 11465051 -231199302 - AluSc SINE Alu -2 307 2 2373 80 7 3 chr1 11465051 11465352 -231199001 - AluSg SINE Alu -8 302 1 2325 95 3 0 chr1 11465610 11465904 -231198449 - AluSg SINE Alu -14 296 2 2115 112 0 11 chr1 11465915 11466236 -231198117 - AluSx SINE Alu 0 318 1 289 301 61 89 chr1 11466452 11466698 -231197655 + L2 LINE L2 1552 1790 -1524 1985 146 27 0 chr1 11466701 11466995 -231197358 + AluJb SINE Alu 1 302 -10 1691 138 43 0 chr1 11467274 11467527 -231196826 + AluSq SINE Alu 1 264 -49 185 227 68 0 chr1 11468267 11468311 -231196042 - L2 LINE L2 -5 3308 3262 1587 168 67 18 chr1 11468585 11468870 -231195483 + AluSg SINE Alu 1 299 -11 1787 166 0 17 chr1 11469955 11470311 -231194042 - AluSx SINE Alu 0 312 1 1488 151 0 5 chr1 11470622 11470840 -231193513 - AluSq SINE Alu -96 217 1 2658 194 27 5 chr1 11470840 11471393 -231192960 - L1MA4 LINE L1 -50 6250 5686 775 126 0 0 chr1 11471393 11471496 -231192857 + AluSq/x SINE Alu 1 103 -210 879 218 5 9 chr1 11471496 11471716 -231192637 - L1MA4 LINE L1 -609 5691 5473 2172 133 3 9 chr1 11471904 11472219 -231192134 - AluSp SINE Alu 0 313 1 2097 142 3 0 chr1 11472762 11473065 -231191288 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr1 11473068 11473093 -231191260 + AT_rich Low_complexity Low_complexity 1 25 0 2023 145 0 3 chr1 11473171 11473486 -231190867 + AluSc SINE Alu 1 314 0 1778 161 10 26 chr1 11473835 11474140 -231190213 - AluSc SINE Alu -1 308 9 259 176 0 0 chr1 11474152 11474203 -231190150 - Alu SINE Alu -1 301 251 819 212 164 17 chr1 11474291 11474584 -231189769 - LTR44 LTR ERV1 -183 336 1 460 246 8 8 chr1 11474804 11474934 -231189419 - MER65A LTR ERV1 -105 340 211 2972 198 60 2 chr1 11475067 11475637 -231188716 - LTR26 LTR ERV1 0 603 1 1791 163 14 0 chr1 11476007 11476295 -231188058 - AluSx SINE Alu -16 296 5 1256 202 112 11 chr1 11476875 11476996 -231187357 + AluJb SINE Alu 5 112 -200 1746 162 0 40 chr1 11476996 11477292 -231187061 - AluSx SINE Alu -22 290 7 1256 202 112 11 chr1 11477292 11477437 -231186916 + AluJb SINE Alu 112 298 -14 775 214 0 19 chr1 11477512 11477666 -231186687 + AluSg/x SINE Alu 146 296 -16 1692 186 4 0 chr1 11478090 11478364 -231185989 - AluSx SINE Alu -37 275 1 1419 195 11 35 chr1 11478481 11478768 -231185585 + AluJb SINE Alu 1 280 -32 525 188 31 6 chr1 11478768 11478928 -231185425 + GA-rich Low_complexity Low_complexity 2 165 0 1816 130 70 0 chr1 11479926 11480211 -231184142 + AluSx SINE Alu 1 305 -7 766 174 22 7 chr1 11481273 11481411 -231182942 + FLAM_C SINE Alu 3 142 -1 1952 153 0 3 chr1 11481424 11481718 -231182635 - AluSx SINE Alu -19 293 1 1605 157 0 49 chr1 11482201 11482525 -231181828 - AluSx SINE Alu -4 308 1 1633 166 13 36 chr1 11483787 11484088 -231180265 - AluSp SINE Alu -19 294 1 1539 185 48 7 chr1 11484088 11484379 -231179974 - AluJo SINE Alu -8 304 1 393 241 80 15 chr1 11485120 11485257 -231179096 + MIR SINE MIR 117 262 0 1975 138 0 3 chr1 11485584 11485889 -231178464 + AluSp SINE Alu 1 304 -9 1579 128 43 4 chr1 11485900 11486157 -231178196 + AluSg SINE Alu 1 267 -43 1960 117 0 3 chr1 11486278 11486561 -231177792 + AluSg SINE Alu 1 282 -28 1581 183 0 28 chr1 11486730 11487069 -231177284 - AluJb SINE Alu 0 331 1 1701 172 7 3 chr1 11487074 11487250 -231177103 - AluSx SINE Alu -9 303 124 225 0 0 0 chr1 11487250 11487275 -231177078 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1701 172 7 3 chr1 11487275 11487400 -231176953 - AluSx SINE Alu -188 124 1 2474 221 104 19 chr1 11487401 11488067 -231176286 - L1MC1 LINE L1 -11 6322 5601 196 293 67 40 chr1 11488119 11488194 -231176159 + L2 LINE L2 3169 3245 -27 820 191 7 0 chr1 11488369 11488505 -231175848 + AluSq/x SINE Alu 6 142 -170 1220 0 0 53 chr1 11488511 11488701 -231175652 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5215 72 25 53 chr1 11488701 11489523 -231174830 + SVA Other Other 68 866 -520 729 21 32 0 chr1 11489652 11489747 -231174606 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 305 98 0 20 chr1 11489766 11489817 -231174536 + (GGGAA)n Simple_repeat Simple_repeat 5 54 0 1384 265 44 38 chr1 11489940 11490137 -231174216 + MER41E LTR ERV1 13 207 -305 1998 122 3 0 chr1 11490137 11490464 -231173889 + AluSp SINE Alu 1 328 0 1384 265 44 38 chr1 11490464 11490739 -231173614 + MER41E LTR ERV1 207 490 -22 226 326 56 0 chr1 11490796 11490885 -231173468 + Charlie8 DNA MER1_type 127 220 -2197 2695 236 12 64 chr1 11490893 11491830 -231172523 - L1 LINE L1 -1297 6268 5381 942 247 11 0 chr1 11491894 11492232 -231172121 - L1 LINE L1 -3780 3785 3441 4199 240 38 33 chr1 11492235 11493861 -231170492 - MER52A LTR ERV1 -6 1749 61 1335 237 0 0 chr1 11494570 11494857 -231169496 + AluSx SINE Alu 19 305 -7 440 210 17 42 chr1 11495242 11495361 -231168992 + FLAM_C SINE Alu 1 116 -17 21 71 0 0 chr1 11495369 11495411 -231168942 + AT_rich Low_complexity Low_complexity 1 42 0 630 181 0 2 chr1 11498705 11498943 -231165410 + AluSx SINE Alu 3 292 -17 735 237 0 0 chr1 11498962 11499131 -231165222 + AluSx SINE Alu 127 295 -15 1838 139 3 0 chr1 11499207 11499494 -231164859 + AluSq SINE Alu 1 288 -25 26 0 0 0 chr1 11499792 11499818 -231164535 + AT_rich Low_complexity Low_complexity 1 26 0 1359 179 7 52 chr1 11500860 11501168 -231163185 - AluSx SINE Alu -14 298 5 1687 167 17 0 chr1 11501748 11502042 -231162311 + AluY SINE Alu 3 301 -10 1336 71 0 16 chr1 11502058 11502367 -231161986 + (GAAA)n Simple_repeat Simple_repeat 1 303 0 803 260 0 10 chr1 11502368 11502564 -231161789 + AluJb SINE Alu 16 209 -103 863 229 37 0 chr1 11504549 11504767 -231159586 + AluSg/x SINE Alu 85 310 -2 1848 164 0 0 chr1 11505296 11505600 -231158753 + AluSc SINE Alu 1 304 -5 3545 202 24 48 chr1 11505770 11506744 -231157609 + LTR5 LTR ERVK 6 955 -14 32587 188 29 29 chr1 11506756 11514280 -231150073 + HERVK LTR ERVK 1 7392 -25 3398 190 22 58 chr1 11514289 11515228 -231149125 + LTR5 LTR ERVK 1 906 -63 979 199 31 49 chr1 11515513 11515799 -231148554 + LTR5 LTR ERVK 675 955 -14 2287 159 36 5 chr1 11515826 11516216 -231148137 + LTR57 LTR ERVL 3 404 -7 288 305 55 8 chr1 11516919 11517047 -231147306 + MIR SINE MIR 117 250 -12 3264 177 11 36 chr1 11517105 11517421 -231146932 + MER49 LTR ERV1 1 294 -629 2156 108 0 0 chr1 11517421 11517718 -231146635 - AluSg SINE Alu -13 297 1 3264 177 11 36 chr1 11517718 11518038 -231146315 + MER49 LTR ERV1 294 621 -302 404 230 0 104 chr1 11518050 11518185 -231146168 + AluSq/x SINE Alu 10 130 -173 762 93 0 0 chr1 11521560 11521668 -231142685 + (GGGA)n Simple_repeat Simple_repeat 1 108 0 187 345 43 9 chr1 11522293 11522409 -231141944 - MIR SINE MIR -80 182 63 1025 271 61 17 chr1 11524332 11524694 -231139659 - Tigger6 DNA MER2_type -12 1585 1208 283 339 199 0 chr1 11526050 11526221 -231138132 - MIR SINE MIR 0 262 58 387 138 0 0 chr1 11526472 11526530 -231137823 + AluSc SINE Alu 232 289 -10 239 254 17 0 chr1 11526535 11526594 -231137759 - MER94 DNA DNA -62 72 13 1954 53 0 0 chr1 11526676 11526920 -231137433 - L1PA4 LINE L1 0 6155 5912 40766 48 1 21 chr1 11526927 11529506 -231134847 - L1PA4 LINE L1 -1097 5049 2549 336 171 0 40 chr1 11529506 11529582 -231134771 + LTR30 LTR ERV1 552 624 -98 40766 48 1 21 chr1 11529582 11532069 -231132284 - L1PA4 LINE L1 -3597 2549 13 1909 122 30 3 chr1 11532603 11532898 -231131455 - AluSx SINE Alu -8 304 2 261 229 4 74 chr1 11533260 11533333 -231131020 + LTR45 LTR ERV1 327 404 -88 1990 121 0 66 chr1 11533333 11533512 -231130841 - AluSg SINE Alu 0 310 162 9943 48 58 14 chr1 11533512 11534855 -231129498 - SVA Other Other 0 1386 1 1990 121 0 66 chr1 11534855 11535007 -231129346 - AluSg SINE Alu -148 162 1 261 229 4 74 chr1 11535007 11535025 -231129328 + LTR45 LTR ERV1 404 412 -80 1778 175 0 0 chr1 11535025 11535317 -231129036 - AluSg SINE Alu -18 292 1 261 229 4 74 chr1 11535317 11535331 -231129022 + LTR45 LTR ERV1 412 425 -67 25 31 0 0 chr1 11536300 11536332 -231128021 + AT_rich Low_complexity Low_complexity 1 32 0 1463 170 88 137 chr1 11536370 11536916 -231127437 - LTR44 LTR ERV1 0 519 1 764 197 82 19 chr1 11537064 11537272 -231127081 - MER65A LTR ERV1 -14 431 211 3010 198 45 2 chr1 11537410 11537986 -231126367 - LTR26 LTR ERV1 -2 601 1 1617 172 7 0 chr1 11538358 11538648 -231125705 - AluSx SINE Alu -20 292 1 1275 190 0 117 chr1 11539224 11539362 -231124991 + AluJb SINE Alu 5 85 -217 1698 160 0 4 chr1 11539362 11539643 -231124710 - AluSx SINE Alu -32 280 1 1275 190 0 117 chr1 11539643 11539830 -231124523 + AluJb SINE Alu 85 292 -10 809 183 0 0 chr1 11539910 11540047 -231124306 + AluSg/x SINE Alu 138 274 -36 1567 166 4 0 chr1 11540517 11540776 -231123577 - AluSx SINE Alu -52 260 1 800 141 0 63 chr1 11540906 11541048 -231123305 + AluJo SINE Alu 14 146 -166 184 227 68 0 chr1 11542686 11542730 -231121623 - L2 LINE L2 -5 3308 3262 1448 168 67 18 chr1 11543004 11543289 -231121064 + AluSg SINE Alu 1 299 -11 1646 166 0 17 chr1 11544374 11544730 -231119623 - AluSx SINE Alu 0 312 1 1364 156 0 5 chr1 11545041 11545259 -231119094 - AluSq SINE Alu -96 217 1 2771 192 29 5 chr1 11545259 11545811 -231118542 - L1MA4 LINE L1 -50 6250 5686 759 126 0 0 chr1 11545811 11545914 -231118439 + AluSq/x SINE Alu 1 103 -209 946 222 0 9 chr1 11545914 11546135 -231118218 - L1MA4 LINE L1 -609 5691 5473 1954 143 3 9 chr1 11546323 11546638 -231117715 - AluSp SINE Alu 0 313 1 1998 124 3 0 chr1 11547181 11547535 -231116818 + AluSq SINE Alu 1 355 0 1853 148 0 3 chr1 11547590 11547905 -231116448 + AluSc SINE Alu 1 314 0 1766 142 3 11 chr1 11548257 11548576 -231115777 - AluSc SINE Alu 0 317 1 293 157 0 0 chr1 11548577 11548628 -231115725 - Alu SINE Alu -1 301 251 969 191 164 17 chr1 11548716 11549009 -231115344 - LTR44 LTR ERV1 -183 336 1 513 239 8 8 chr1 11549229 11549359 -231114994 - MER65A LTR ERV1 -105 340 211 2896 200 60 2 chr1 11549492 11550062 -231114291 - LTR26 LTR ERV1 0 603 1 1685 142 17 3 chr1 11550432 11550720 -231113633 - AluSx SINE Alu -16 296 5 23 0 0 0 chr1 11551180 11551203 -231113150 + AT_rich Low_complexity Low_complexity 1 23 0 1269 199 112 11 chr1 11551304 11551425 -231112928 + AluJb SINE Alu 5 112 -190 1640 162 0 37 chr1 11551425 11551722 -231112631 - AluSx SINE Alu -20 292 7 1269 199 112 11 chr1 11551722 11551867 -231112486 + AluJb SINE Alu 112 298 -4 782 183 0 0 chr1 11551942 11552073 -231112280 + AluSg/x SINE Alu 144 274 -36 1553 177 0 0 chr1 11552534 11552794 -231111559 - AluSx SINE Alu -52 260 1 1294 199 7 31 chr1 11552911 11553198 -231111155 + AluJb SINE Alu 1 280 -32 504 194 31 6 chr1 11553198 11553358 -231110995 + GA-rich Low_complexity Low_complexity 2 165 0 1603 139 71 0 chr1 11554356 11554636 -231109717 + AluSx SINE Alu 1 300 -12 737 180 22 7 chr1 11555697 11555836 -231108517 + FLAM_C SINE Alu 2 142 -1 1800 153 0 3 chr1 11555849 11556143 -231108210 - AluSx SINE Alu -19 293 1 1865 161 0 0 chr1 11556629 11556933 -231107420 - AluSx SINE Alu -8 304 1 1620 162 7 33 chr1 11558193 11558495 -231105858 - AluSp SINE Alu -19 294 1 1345 192 48 7 chr1 11558495 11558785 -231105568 - AluJo SINE Alu -9 303 1 379 248 78 16 chr1 11559526 11559655 -231104698 + MIR SINE MIR 117 253 -9 1887 141 3 3 chr1 11559990 11560289 -231104064 + AluSp SINE Alu 1 299 -14 1656 117 43 4 chr1 11560305 11560562 -231103791 + AluSg SINE Alu 1 267 -43 1917 120 0 3 chr1 11560683 11560966 -231103387 + AluSg SINE Alu 1 282 -28 1625 176 0 28 chr1 11561135 11561458 -231102895 - AluJb SINE Alu 0 315 1 1609 176 0 50 chr1 11561463 11561782 -231102571 - AluSx SINE Alu -9 303 1 2487 218 104 19 chr1 11561783 11562449 -231101904 - L1MC1 LINE L1 -11 6322 5601 196 293 67 40 chr1 11562501 11562576 -231101777 + L2 LINE L2 3169 3245 -27 833 194 7 0 chr1 11562749 11562888 -231101465 + AluSq/x SINE Alu 3 142 -170 22034 77 1 0 chr1 11562893 11565725 -231098628 + L1PA7 LINE L1 8 2840 -3306 1560 58 0 0 chr1 11565721 11565911 -231098442 - L1PA4 LINE L1 -172 5983 5794 * 1070 70 0 0 chr1 11565911 11566045 -231098308 + L1PA4 LINE L1 6013 6155 0 * 18564 84 17 14 chr1 11566043 11569531 -231094822 + L1PA7 LINE L1 2827 6319 0 1353 50 0 11 chr1 11569349 11569699 -231094654 + (GAAA)n Simple_repeat Simple_repeat 1 348 0 327 130 0 0 chr1 11569711 11569765 -231094588 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 1334 271 44 34 chr1 11569887 11570084 -231094269 + MER41E LTR ERV1 13 206 -306 1953 126 3 0 chr1 11570084 11570401 -231093952 + AluSp SINE Alu 1 318 0 1334 271 44 34 chr1 11570401 11570674 -231093679 + MER41E LTR ERV1 206 490 -22 2646 240 13 63 chr1 11570828 11571763 -231092590 - L1 LINE L1 -1297 6268 5381 919 251 11 0 chr1 11571827 11572165 -231092188 - L1 LINE L1 -3780 3785 3441 5692 230 29 72 chr1 11572168 11573803 -231090550 - MER52A LTR ERV1 -6 1749 51 1219 254 0 0 chr1 11574503 11574790 -231089563 + AluSx SINE Alu 19 305 -7 375 175 88 14 chr1 11575174 11575265 -231089088 + AluJ/FLAM SINE Alu 1 62 -240 21 71 0 0 chr1 11575273 11575315 -231089038 + AT_rich Low_complexity Low_complexity 1 42 0 592 184 0 6 chr1 11578692 11578931 -231085422 + AluSx SINE Alu 3 292 -17 723 249 0 0 chr1 11578945 11579118 -231085235 + AluSx SINE Alu 122 294 -16 1784 154 3 0 chr1 11579194 11579486 -231084867 + AluSq SINE Alu 1 293 -20 21 0 0 0 chr1 11579804 11579825 -231084528 + AT_rich Low_complexity Low_complexity 1 21 0 1646 156 4 4 chr1 11580878 11581154 -231083199 - AluSx SINE Alu -26 286 11 792 253 0 15 chr1 11581414 11581616 -231082737 + AluJb SINE Alu 15 213 -99 473 295 90 35 chr1 11581898 11581959 -231082394 + L1M4 LINE L1 3729 3785 -2361 2134 119 3 0 chr1 11581959 11582270 -231082083 + AluSp SINE Alu 1 312 -1 473 295 90 35 chr1 11582270 11582531 -231081822 + L1M4 LINE L1 3785 4087 -2059 559 284 72 68 chr1 11582574 11582639 -231081714 + MIR SINE MIR 12 75 -187 1636 66 5 0 chr1 11582639 11582850 -231081503 + AluY SINE Alu 82 293 -18 559 284 72 68 chr1 11582850 11583034 -231081319 + MIR SINE MIR 75 262 0 1589 141 6 73 chr1 11583146 11583459 -231080894 + AluSx SINE Alu 1 292 -20 242 237 17 0 chr1 11583463 11583522 -231080831 - MER94 DNA DNA -62 72 13 1811 113 33 4 chr1 11583954 11584228 -231080125 - AluSx SINE Alu -28 284 3 321 242 12 127 chr1 11584575 11584654 -231079699 + LTR45B LTR ERV1 328 414 -75 2037 124 7 0 chr1 11584654 11584961 -231079392 - AluSg SINE Alu -1 309 1 321 242 12 127 chr1 11584961 11584978 -231079375 + LTR45B LTR ERV1 414 431 -58 1763 163 3 0 chr1 11584978 11585273 -231079080 - AluSg SINE Alu -14 296 1 321 242 12 127 chr1 11585273 11585340 -231079013 + LTR45B LTR ERV1 431 473 -16 1705 143 4 0 chr1 11585999 11586265 -231078088 - AluSp SINE Alu -44 269 3 454 262 91 11 chr1 11586595 11586782 -231077571 - MER65A LTR ERV1 -33 412 211 2952 186 58 7 chr1 11586917 11587491 -231076862 - LTR26 LTR ERV1 0 603 1 1710 170 14 0 chr1 11587859 11588147 -231076206 - AluSx SINE Alu -20 292 1 5591 19 5 1 chr1 11590138 11590917 -231073436 - L1PA3 LINE L1 -250 5905 5124 401 179 26 0 chr1 11590917 11590995 -231073358 - LTR44 LTR ERV1 -115 404 325 1108 197 153 10 chr1 11591051 11591345 -231073008 - LTR44 LTR ERV1 -183 336 1 679 193 84 38 chr1 11591491 11591704 -231072649 - MER65A LTR ERV1 -12 433 211 2955 201 45 2 chr1 11591839 11592417 -231071936 - LTR26 LTR ERV1 0 603 1 1709 173 13 0 chr1 11592786 11593086 -231071267 - AluSx SINE Alu -8 304 1 1374 181 3 101 chr1 11593661 11593778 -231070575 + AluJb SINE Alu 9 136 -176 1654 171 0 21 chr1 11593778 11594064 -231070289 - AluSx SINE Alu -20 292 13 1374 181 3 101 chr1 11594064 11594282 -231070071 + AluJb SINE Alu 136 311 -1 858 194 0 0 chr1 11594369 11594513 -231069840 + AluSg/x SINE Alu 140 283 -29 1722 179 24 0 chr1 11594947 11595244 -231069109 - AluSx SINE Alu -8 304 1 803 147 0 63 chr1 11595369 11595512 -231068841 + AluJo SINE Alu 9 142 -170 1690 178 59 0 chr1 11597471 11597758 -231066595 + AluSg SINE Alu 6 309 -1 2461 19 0 0 chr1 11598719 11598988 -231065365 - AluYa5 SINE Alu 0 311 43 33 0 0 0 chr1 11599142 11599175 -231065178 + AT_rich Low_complexity Low_complexity 1 33 0 1651 195 3 3 chr1 11599175 11599483 -231064870 - AluSx SINE Alu -4 308 1 1491 141 0 0 chr1 11599798 11600011 -231064342 - AluSq SINE Alu -100 213 1 2797 188 29 7 chr1 11600011 11600565 -231063788 - L1MA4 LINE L1 -50 6250 5685 692 157 0 0 chr1 11600565 11600667 -231063686 + AluSq/x SINE Alu 2 103 -209 994 217 0 9 chr1 11600667 11600888 -231063465 - L1MA4 LINE L1 -609 5691 5473 2231 120 3 0 chr1 11601094 11601394 -231062959 - AluSp SINE Alu -12 301 1 1964 143 3 7 chr1 11601937 11602293 -231062060 + AluSq SINE Alu 1 355 0 2013 141 0 3 chr1 11602348 11602663 -231061690 + AluSc SINE Alu 1 314 0 1907 158 7 10 chr1 11603019 11603329 -231061024 - AluSc SINE Alu 0 309 1 344 115 0 0 chr1 11603329 11603381 -231060972 - Alu SINE Alu 0 301 250 994 187 160 17 chr1 11603469 11603763 -231060590 - LTR44 LTR ERV1 -183 336 1 518 239 8 8 chr1 11603983 11604113 -231060240 - MER65A LTR ERV1 -105 340 211 2780 211 60 2 chr1 11604246 11604816 -231059537 - LTR26 LTR ERV1 0 603 1 1701 162 10 24 chr1 11605185 11605481 -231058872 - AluSx SINE Alu -16 296 5 1426 184 13 61 chr1 11606058 11606179 -231058174 + AluJb SINE Alu 5 130 -182 1835 153 0 39 chr1 11606179 11606487 -231057866 - AluSx SINE Alu -16 296 1 1426 184 13 61 chr1 11606487 11606675 -231057678 + AluJb SINE Alu 130 299 -13 725 208 0 26 chr1 11606750 11606904 -231057449 + AluSc SINE Alu 144 293 -16 724 218 7 14 chr1 11607328 11607475 -231056878 - AluSg/x SINE Alu -37 275 130 1358 196 14 32 chr1 11607484 11607769 -231056584 + AluJb SINE Alu 1 280 -32 468 199 32 6 chr1 11607769 11607925 -231056428 + GA-rich Low_complexity Low_complexity 2 161 0 1761 132 71 0 chr1 11608922 11609203 -231055150 + AluSx SINE Alu 1 301 -11 691 188 22 7 chr1 11610264 11610402 -231053951 + FLAM_C SINE Alu 2 141 -2 1941 154 0 3 chr1 11610416 11610709 -231053644 - AluSx SINE Alu -20 292 1 1990 155 7 0 chr1 11611194 11611498 -231052855 - AluSx SINE Alu -6 306 1 1817 149 7 33 chr1 11612758 11613060 -231051293 - AluSq SINE Alu -19 294 1 1551 184 44 7 chr1 11613060 11613353 -231051000 - AluJo SINE Alu -7 305 1 321 256 78 16 chr1 11614094 11614223 -231050130 + MIR SINE MIR 117 253 -9 2163 120 0 3 chr1 11614558 11614857 -231049496 + AluSp SINE Alu 1 298 -15 1698 128 43 4 chr1 11614873 11615130 -231049223 + AluSg SINE Alu 1 267 -43 1988 127 0 3 chr1 11615252 11615535 -231048818 + AluSg SINE Alu 1 282 -28 1646 153 55 29 chr1 11615704 11616002 -231048351 - AluJb SINE Alu 0 305 1 1890 151 3 50 chr1 11616007 11616325 -231048028 - AluSx SINE Alu -9 303 1 1575 226 14 3 chr1 11616326 11616697 -231047656 - L1MC1 LINE L1 -11 6322 5948 916 201 189 15 chr1 11616714 11616978 -231047375 - L1MC1 LINE L1 -423 5910 5601 816 191 7 0 chr1 11617280 11617416 -231046937 + AluSx SINE Alu 6 142 -171 22316 73 0 2 chr1 11617421 11620259 -231044094 + L1PA4 LINE L1 8 2840 -3306 1553 58 0 0 chr1 11620255 11620445 -231043908 - L1PA4 LINE L1 -172 5983 5794 * 1077 70 0 0 chr1 11620445 11620579 -231043774 + L1PA4 LINE L1 6013 6155 0 * 20833 44 1 24 chr1 11620577 11623914 -231040439 + L1PA4 LINE L1 2827 6150 -5 1060 177 0 0 chr1 11623915 11624090 -231040263 + AluSx SINE Alu 133 307 -3 21 36 0 0 chr1 11625172 11625200 -231039153 + AT_rich Low_complexity Low_complexity 1 28 0 536 164 0 39 chr1 11627187 11627317 -231037036 + AluSp/q SINE Alu 188 313 0 1543 207 10 3 chr1 11627543 11627852 -231036501 - AluJb SINE Alu 0 312 2 1111 250 66 44 chr1 11627852 11627985 -231036368 - Tigger6 DNA MER2_type -66 1531 1402 1709 163 14 0 chr1 11627985 11628279 -231036074 + AluSx SINE Alu 3 300 -12 1111 250 66 44 chr1 11628279 11628553 -231035800 - Tigger6 DNA MER2_type -195 1402 1115 1073 186 24 20 chr1 11630857 11631104 -231033249 + L1MA7 LINE L1 6026 6273 -18 18962 99 3 15 chr1 11631402 11634946 -231029407 + L1PA7 LINE L1 2548 6136 -18 1187 107 4 16 chr1 11634946 11635180 -231029173 + (GAAA)n Simple_repeat Simple_repeat 4 228 0 294 164 0 0 chr1 11635183 11635238 -231029115 + GA-rich Low_complexity Low_complexity 1 55 0 1328 261 43 45 chr1 11635350 11635547 -231028806 + MER41E LTR ERV1 13 209 -303 2097 110 21 0 chr1 11635547 11635865 -231028488 + AluSp SINE Alu 1 324 0 1328 261 43 45 chr1 11635865 11636128 -231028225 + MER41E LTR ERV1 209 474 -38 3096 226 10 48 chr1 11636298 11637221 -231027132 - L1 LINE L1 -1297 6268 5381 944 252 18 3 chr1 11637285 11637625 -231026728 - L1 LINE L1 -3780 3785 3441 5649 230 33 68 chr1 11637628 11639263 -231025090 - MER52A LTR ERV1 -6 1749 51 1270 246 0 0 chr1 11639967 11640255 -231024098 + AluSx SINE Alu 18 305 -7 653 188 0 8 chr1 11640637 11640754 -231023599 + FLAM_C SINE Alu 1 116 -17 21 71 0 0 chr1 11640762 11640804 -231023549 + AT_rich Low_complexity Low_complexity 1 42 0 581 207 4 2 chr1 11644080 11644317 -231020036 + AluSx SINE Alu 3 295 -17 709 244 0 0 chr1 11644336 11644504 -231019849 + AluSx SINE Alu 127 294 -16 1792 147 3 0 chr1 11644577 11644869 -231019484 + AluSq SINE Alu 1 293 -20 26 0 0 0 chr1 11645178 11645204 -231019149 + AT_rich Low_complexity Low_complexity 1 26 0 1516 181 3 3 chr1 11646254 11646536 -231017817 - AluSx SINE Alu -26 286 5 1656 174 17 0 chr1 11647116 11647577 -231016776 + AluY SINE Alu 3 468 0 793 254 0 15 chr1 11647578 11647779 -231016574 + AluJb SINE Alu 16 213 -99 240 35 0 0 chr1 11648874 11648903 -231015450 + (TG)n Simple_repeat Simple_repeat 1 29 0 984 201 32 0 chr1 11649769 11649988 -231014365 + AluSg/x SINE Alu 85 310 -2 1573 172 45 0 chr1 11650517 11650814 -231013539 + AluSc SINE Alu 1 309 0 3392 207 35 53 chr1 11650969 11651955 -231012398 + LTR5 LTR ERVK 1 969 0 27152 159 28 32 chr1 11651957 11656790 -231007563 + HERVK LTR ERVK 3 4815 -2428 250 310 53 41 chr1 11657254 11657499 -231006854 - PABL_B-int LTR ERV1 -4280 2842 2595 239 333 54 16 chr1 11657995 11658124 -231006229 - MIR SINE MIR -12 250 117 317 306 105 39 chr1 11662767 11662996 -231001357 + L1M4 LINE L1 2808 3051 -3095 954 226 52 4 chr1 11664466 11664696 -230999657 + AluJb SINE Alu 44 284 -28 180 353 35 0 chr1 11665307 11665423 -230998930 - MIR SINE MIR -80 182 63 249 278 42 0 chr1 11667153 11667225 -230997128 - L2 LINE L2 -10 3262 3188 1033 243 72 15 chr1 11667291 11667625 -230996728 - Tigger6 DNA MER2_type -37 1560 1208 8103 161 25 70 chr1 11668770 11670131 -230994222 + L1MA4 LINE L1 3643 5063 -1237 2061 122 3 7 chr1 11670131 11670434 -230993919 + AluSc SINE Alu 1 302 -7 8103 161 25 70 chr1 11670434 11671659 -230992694 + L1MA4 LINE L1 5063 6082 -218 2346 69 6 28 chr1 11671659 11671977 -230992376 - AluY SINE Alu 0 311 1 8103 161 25 70 chr1 11671977 11672185 -230992168 + L1MA4 LINE L1 6082 6298 -2 783 200 16 32 chr1 11672230 11672420 -230991933 + MER5A DNA MER1_type 3 189 0 781 215 95 119 chr1 11672820 11673317 -230991036 + MLT1D LTR MaLR 21 505 0 721 94 219 16 chr1 11673563 11673691 -230990662 - MER30 DNA MER1_type 0 230 77 183 42 0 0 chr1 11673691 11673715 -230990638 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1348 154 5 0 chr1 11673716 11673937 -230990416 - AluSx SINE Alu -32 280 59 695 86 0 0 chr1 11674037 11674130 -230990223 - AluS SINE Alu -219 94 2 230 316 90 11 chr1 11674132 11674309 -230990044 + L1M4 LINE L1 3727 3917 -2229 551 303 100 26 chr1 11674481 11674712 -230989641 + MIR SINE MIR 15 262 0 1860 122 0 17 chr1 11674824 11675111 -230989242 + AluSx SINE Alu 1 282 -30 262 220 17 0 chr1 11675131 11675190 -230989163 - MER94 DNA DNA -62 72 13 204 235 0 0 chr1 11675391 11675442 -230988911 + (TA)n Simple_repeat Simple_repeat 1 51 0 295 332 57 42 chr1 11675636 11675829 -230988524 + MER110-int LTR ERV1 2243 2438 -2209 1840 112 42 0 chr1 11675841 11676126 -230988227 - AluSx SINE Alu -14 298 2 2074 123 3 0 chr1 11676568 11676868 -230987485 - AluSp SINE Alu -12 301 1 1709 157 94 135 chr1 11676972 11677513 -230986840 - LTR44 LTR ERV1 0 519 1 621 185 81 77 chr1 11677659 11677881 -230986472 - MER65A LTR ERV1 -12 433 211 3111 187 45 2 chr1 11678016 11678594 -230985759 - LTR26 LTR ERV1 0 603 1 365 64 0 0 chr1 11678794 11678841 -230985512 - AluSg SINE Alu -7 293 247 1390 102 0 0 chr1 11678841 11679028 -230985325 - AluSg SINE Alu -123 187 1 1769 135 28 3 chr1 11679211 11679377 -230984976 - AluSx SINE Alu -16 296 119 189 0 0 0 chr1 11679377 11679398 -230984955 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1769 135 28 3 chr1 11679398 11679520 -230984833 - AluSx SINE Alu -193 119 1 889 108 8 0 chr1 11679521 11679651 -230984702 - AluSq/x SINE Alu -177 136 6 1500 161 0 58 chr1 11680217 11680338 -230984015 + AluJb SINE Alu 5 132 -180 1944 118 0 20 chr1 11680338 11680635 -230983718 - AluSx SINE Alu -21 291 1 1500 161 0 58 chr1 11680635 11680804 -230983549 + AluJb SINE Alu 132 278 -34 453 142 41 123 chr1 11681024 11681152 -230983201 - MER65-int LTR ERV1 -4048 823 728 188 246 0 77 chr1 11681152 11681217 -230983136 - L3b LINE CR1 -105 1478 1419 348 0 0 55 chr1 11681503 11681558 -230982795 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1185 160 0 0 chr1 11681607 11681794 -230982559 - AluSx SINE Alu -125 187 1 790 197 0 0 chr1 11682257 11682394 -230981959 + AluSg/x SINE Alu 140 276 -36 1814 158 10 3 chr1 11682831 11683141 -230981212 - AluSx SINE Alu 0 312 1 1660 133 0 70 chr1 11683502 11683837 -230980516 - AluSg SINE Alu 0 314 1 1779 149 0 20 chr1 11683947 11684243 -230980110 - AluSx SINE Alu -22 290 1 1348 134 0 0 chr1 11684296 11684497 -230979856 - AluSg/x SINE Alu -30 282 82 2054 114 0 13 chr1 11684561 11684860 -230979493 - AluSx SINE Alu -17 295 1 1650 148 13 33 chr1 11684978 11685281 -230979072 + AluJb SINE Alu 1 297 -15 249 211 0 0 chr1 11685281 11685338 -230979015 + GA-rich Low_complexity Low_complexity 1 57 0 796 107 0 0 chr1 11686369 11686472 -230977881 + AluSx SINE Alu 2 104 -209 760 94 0 0 chr1 11686472 11686568 -230977785 - LTR12 LTR ERV1 -4 710 615 275 271 42 25 chr1 11686570 11686688 -230977665 - LTR30 LTR ERV1 -79 643 524 676 137 5 5 chr1 11686775 11686893 -230977460 - LTR12 LTR ERV1 -480 234 3 1460 96 0 0 chr1 11686894 11687093 -230977260 + AluSx SINE Alu 96 294 -18 2224 54 30 20 chr1 11687213 11687388 -230976965 - AluY SINE Alu -12 299 118 369 0 0 0 chr1 11687388 11687429 -230976924 + (TG)n Simple_repeat Simple_repeat 2 42 0 2224 54 30 20 chr1 11687429 11687549 -230976804 - AluY SINE Alu -193 118 1 579 199 23 23 chr1 11688481 11688612 -230975741 + FLAM_C SINE Alu 1 131 -2 2174 124 17 0 chr1 11688633 11688923 -230975430 - AluSq SINE Alu -18 295 1 1719 61 0 14 chr1 11688986 11689198 -230975155 - AluY SINE Alu -102 209 1 2246 120 7 0 chr1 11689682 11689983 -230974370 - AluSx SINE Alu -9 303 1 515 148 0 0 chr1 11690807 11690888 -230973465 - AluSg/x SINE Alu -50 262 182 2309 90 0 43 chr1 11690947 11691270 -230973083 + AluSc SINE Alu 1 309 0 335 256 78 16 chr1 11691526 11691655 -230972698 + MIR SINE MIR 117 253 -9 2410 82 3 0 chr1 11691697 11692000 -230972353 - AluSc SINE Alu -5 304 1 245 105 0 0 chr1 11692422 11692460 -230971893 + Alu SINE Alu 255 292 -7 1473 93 69 5 chr1 11692462 11692678 -230971675 + AluSx SINE Alu 1 230 -82 2314 108 16 0 chr1 11692834 11693141 -230971212 + AluSx SINE Alu 1 312 0 2545 198 74 26 chr1 11693159 11693372 -230970981 + L1MC1 LINE L1 5601 5802 -531 2413 104 0 0 chr1 11693372 11693679 -230970674 + AluSg1 SINE Alu 1 307 -2 2545 198 74 26 chr1 11693679 11694152 -230970201 + L1MC1 LINE L1 5802 6320 -13 2160 112 3 3 chr1 11694158 11694488 -230969865 + AluSq SINE Alu 1 330 0 2136 109 0 56 chr1 11694493 11694814 -230969539 + AluSx SINE Alu 1 303 -9 1860 147 7 4 chr1 11694821 11695123 -230969230 + AluJb SINE Alu 3 305 0 2265 105 20 0 chr1 11695594 11695900 -230968453 - AluSx SINE Alu 0 312 1 692 284 96 22 chr1 11695901 11696380 -230967973 - MER115 DNA AcHobo -137 556 2 278 300 42 110 chr1 11696670 11696933 -230967420 + MIR SINE MIR 14 258 -4 270 298 71 0 chr1 11697001 11697085 -230967268 + MIR SINE MIR 95 184 -78 429 252 39 96 chr1 11697135 11697195 -230967158 - L2 LINE L2 -1 3312 3250 2484 93 0 0 chr1 11697195 11697505 -230966848 - AluSg SINE Alu 0 310 1 429 252 39 96 chr1 11697505 11697674 -230966679 - L2 LINE L2 -63 3250 3096 2496 71 0 13 chr1 11698141 11698449 -230965904 - AluY SINE Alu -7 304 1 1280 178 53 41 chr1 11699124 11699536 -230964817 + MLT2B1 LTR ERVL 1 407 -7 444 328 48 0 chr1 11699589 11699775 -230964578 + L2 LINE L2 3106 3300 -13 1795 194 13 27 chr1 11700483 11700855 -230963498 - MLT1A2 LTR MaLR -7 367 1 2176 112 34 0 chr1 11701883 11702178 -230962175 - AluSx SINE Alu -7 305 1 1763 95 0 26 chr1 11702434 11702666 -230961687 + AluSg/x SINE Alu 67 292 -18 193 214 18 36 chr1 11702745 11702801 -230961552 - L2 LINE L2 -79 3234 3180 436 307 241 10 chr1 11702804 11703105 -230961248 - L2 LINE L2 0 3313 3083 1736 173 50 0 chr1 11703105 11703382 -230960971 + AluJo SINE Alu 1 291 -21 436 307 241 10 chr1 11703382 11703474 -230960879 - L2 LINE L2 -230 3083 2829 736 273 92 4 chr1 11703788 11704015 -230960338 - MIR SINE MIR 0 262 16 24 0 0 0 chr1 11704655 11704679 -230959674 + AT_rich Low_complexity Low_complexity 1 24 0 921 172 21 82 chr1 11705450 11705614 -230958739 - MER20 DNA MER1_type 0 219 72 2225 123 0 0 chr1 11705614 11705914 -230958439 + AluSq SINE Alu 3 302 -11 921 172 21 82 chr1 11705914 11705982 -230958371 - MER20 DNA MER1_type -147 72 1 693 146 0 46 chr1 11706035 11706071 -230958282 - FLAM_C SINE Alu -187 125 89 2094 115 58 11 chr1 11706071 11706419 -230957934 + THE1B LTR MaLR 1 364 0 693 146 0 46 chr1 11706419 11706512 -230957841 - FLAM_C SINE Alu -223 89 2 698 213 13 32 chr1 11706523 11706678 -230957675 + MLT1A2 LTR MaLR 1 152 -222 1086 126 75 13 chr1 11706698 11706857 -230957496 - AluSg/x SINE Alu -31 281 113 308 218 0 0 chr1 11706858 11706913 -230957440 - AluJ/monomer SINE Alu -244 55 1 2514 70 0 13 chr1 11706935 11707250 -230957103 - AluY SINE Alu 0 311 1 183 186 0 0 chr1 11707291 11707334 -230957019 + CT-rich Low_complexity Low_complexity 2 44 0 232 264 0 0 chr1 11707334 11707406 -230956947 + MLT1A2 LTR MaLR 194 265 -131 * 974 200 5 0 chr1 11707381 11707566 -230956787 + MLT1B LTR MaLR 205 390 0 198 191 0 0 chr1 11707691 11707738 -230956615 + GA-rich Low_complexity Low_complexity 3 49 0 1914 166 0 10 chr1 11707848 11708155 -230956198 + AluSx SINE Alu 1 304 -8 639 293 27 22 chr1 11708358 11708583 -230955770 - MIR SINE MIR -6 256 31 2290 92 9 28 chr1 11708685 11709002 -230955351 - AluSx SINE Alu -1 311 1 216 288 27 0 chr1 11709283 11709356 -230954997 + MIR SINE MIR 173 247 -15 288 137 0 0 chr1 11709471 11709522 -230954831 + (GGGGA)n Simple_repeat Simple_repeat 4 54 0 375 231 320 10 chr1 11709572 11709975 -230954378 + L2 LINE L2 2721 3262 -51 600 317 49 8 chr1 11710282 11710528 -230953825 - MIR SINE MIR -6 256 1 2413 93 3 0 chr1 11710549 11710851 -230953502 + AluSp SINE Alu 1 303 -10 2178 99 37 0 chr1 11710852 11711146 -230953207 + AluY SINE Alu 1 305 -6 1438 236 41 51 chr1 11711319 11711493 -230952860 - MLT1C LTR MaLR 0 467 293 1852 70 0 26 chr1 11711493 11711723 -230952630 - AluSg/x SINE Alu -16 294 71 1438 236 41 51 chr1 11711723 11712015 -230952338 - MLT1C LTR MaLR -174 293 6 2173 138 0 0 chr1 11712145 11712443 -230951910 - AluJb SINE Alu -9 303 6 501 277 0 8 chr1 11712655 11712785 -230951568 + LTR67 LTR ERVL 426 554 -3 408 20 0 0 chr1 11713580 11713629 -230950724 + (TG)n Simple_repeat Simple_repeat 2 50 0 550 229 185 15 chr1 11713685 11713832 -230950521 - L1ME4a LINE L1 -261 5860 5667 2278 103 0 10 chr1 11713832 11714133 -230950220 - AluSg SINE Alu -12 298 1 550 229 185 15 chr1 11714133 11714190 -230950163 - L1ME4a LINE L1 -454 5667 5621 436 317 30 6 chr1 11714205 11714372 -230949981 - L1ME4a LINE L1 -660 5504 5334 390 305 134 0 chr1 11714486 11714650 -230949703 + L1ME LINE L1 5630 5815 -306 392 182 159 102 chr1 11714941 11715117 -230949236 - MIR3 SINE MIR -3 205 20 2483 87 0 6 chr1 11715711 11716022 -230948331 - AluSx SINE Alu -3 309 1 262 339 9 0 chr1 11716061 11716170 -230948183 + (CCA)n Simple_repeat Simple_repeat 2 111 0 765 227 45 0 chr1 11716644 11716820 -230947533 + MER20 DNA MER1_type 1 184 -35 1338 141 5 18 chr1 11716890 11717110 -230947243 - AluJb SINE Alu -11 301 85 288 151 0 82 chr1 11717144 11717217 -230947136 + L1MB3 LINE L1 6084 6150 -33 2419 100 0 0 chr1 11717229 11717539 -230946814 - AluSx SINE Alu -2 310 1 1832 175 21 13 chr1 11717541 11717924 -230946429 - L1MB3 LINE L1 -42 6141 5756 2237 120 0 3 chr1 11717982 11718282 -230946071 + AluSx SINE Alu 1 299 -13 1502 193 179 24 chr1 11719033 11719346 -230945007 + MLT1D LTR MaLR 22 418 -87 2217 126 0 0 chr1 11719346 11719639 -230944714 + AluSg SINE Alu 1 293 -17 1502 193 179 24 chr1 11719639 11719744 -230944609 + MLT1D LTR MaLR 418 505 0 238 313 0 0 chr1 11719747 11719814 -230944539 - MIR SINE MIR -112 96 30 574 330 51 9 chr1 11719993 11720208 -230944145 - MIR SINE MIR -34 228 5 392 321 36 7 chr1 11720255 11720395 -230943958 + MIR3 SINE MIR 30 173 -35 766 303 88 14 chr1 11721209 11721506 -230942847 - L3 LINE CR1 -57 1520 1202 1785 146 7 28 chr1 11721747 11722035 -230942318 - AluJo SINE Alu -30 282 1 924 330 29 10 chr1 11722202 11722786 -230941567 - L2 LINE L2 0 3313 2712 216 244 98 12 chr1 11723063 11723145 -230941208 + MIR SINE MIR 47 135 -127 735 208 33 47 chr1 11723172 11723260 -230941093 + Charlie5 DNA MER1_type 2365 2453 -132 2093 99 54 7 chr1 11723260 11723554 -230940799 + AluSp SINE Alu 1 308 -5 735 208 33 47 chr1 11723554 11723677 -230940676 + Charlie5 DNA MER1_type 2453 2573 -12 228 35 0 0 chr1 11723797 11723826 -230940527 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2254 104 0 3 chr1 11723916 11724203 -230940150 + AluSg SINE Alu 1 286 -24 2063 187 53 29 chr1 11724317 11724661 -230939692 - MLT1C LTR MaLR -7 460 101 2346 105 0 7 chr1 11724661 11724965 -230939388 - AluSx SINE Alu -10 302 1 2063 187 53 29 chr1 11724965 11725069 -230939284 - MLT1C LTR MaLR -366 101 1 543 258 65 21 chr1 11725119 11725305 -230939048 - LTR33 LTR ERVL -7 514 321 3297 130 28 28 chr1 11725417 11725535 -230938818 + MER4A LTR ERV1 1 118 -482 2314 88 0 49 chr1 11725535 11725863 -230938490 + AluSx SINE Alu 1 312 0 3297 130 28 28 chr1 11725863 11726344 -230938009 + MER4A LTR ERV1 117 600 0 1120 224 22 44 chr1 11726401 11726718 -230937635 + L1MC2 LINE L1 5914 6223 -121 542 161 104 17 chr1 11726806 11726969 -230937384 + L1MC2 LINE L1 6191 7777 -8 1251 139 0 0 chr1 11726969 11727149 -230937204 - AluSg/x SINE Alu -6 306 127 1611 169 16 53 chr1 11727153 11727335 -230937018 - AluJo SINE Alu -5 307 141 207 0 0 0 chr1 11727335 11727358 -230936995 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1611 169 16 53 chr1 11727358 11727494 -230936859 - AluJo SINE Alu -171 141 1 2056 116 0 45 chr1 11727496 11727807 -230936546 - AluY SINE Alu -14 297 1 189 0 0 0 chr1 11727825 11727846 -230936507 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2247 74 7 7 chr1 11728811 11729135 -230935218 - AluSx SINE Alu 0 324 1 229 333 56 0 chr1 11729255 11729363 -230934990 - MIR SINE MIR -57 151 38 2057 123 0 7 chr1 11730006 11730283 -230934070 + AluSx SINE Alu 1 275 -37 339 88 0 44 chr1 11730293 11730361 -230933992 + (GGGGA)n Simple_repeat Simple_repeat 1 65 0 264 195 12 24 chr1 11730388 11730470 -230933883 + GA-rich Low_complexity Low_complexity 3 83 0 524 131 61 0 chr1 11730570 11730669 -230933684 + pTR5 LTR ERV1 1028 1132 -1306 * 760 171 55 61 chr1 11730667 11730831 -230933522 - pTR5 LTR ERV1 -1533 905 743 591 232 65 126 chr1 11730862 11731172 -230933181 - LTR16A1 LTR ERVL -106 351 61 2142 130 0 13 chr1 11731437 11731573 -230932780 + AluSq SINE Alu 1 137 -176 2322 98 0 7 chr1 11731573 11731869 -230932484 + AluSg1 SINE Alu 2 295 -14 2142 130 0 13 chr1 11731869 11732033 -230932320 + AluSq SINE Alu 137 297 -16 197 33 33 0 chr1 11732723 11732753 -230931600 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 316 67 22 0 chr1 11732755 11732800 -230931553 - AluSp/q SINE Alu -20 283 238 6140 122 139 59 chr1 11732803 11734302 -230930051 - pTR5 LTR ERV1 0 2438 745 423 202 0 39 chr1 11734309 11734413 -230929940 - AluSg/x SINE Alu -76 236 137 2279 119 5 31 chr1 11734441 11735006 -230929347 + MER51A LTR ERV1 1 634 0 308 227 0 109 chr1 11735721 11735849 -230928504 + L2 LINE L2 2946 3059 -254 239 263 50 12 chr1 11736004 11736084 -230928269 - MLT1G1 LTR MaLR -89 501 419 461 257 121 43 chr1 11736253 11736539 -230927814 - MLT1G1 LTR MaLR -274 275 1 2341 103 0 7 chr1 11736557 11736859 -230927494 + AluSx SINE Alu 1 300 -12 2297 103 3 25 chr1 11736870 11737189 -230927164 + AluSx SINE Alu 1 312 0 1882 180 73 47 chr1 11737355 11737720 -230926633 - LOR1b LTR ERV1 0 461 80 2228 106 33 0 chr1 11737720 11738023 -230926330 + AluSp SINE Alu 1 313 0 1882 180 73 47 chr1 11738023 11738106 -230926247 - LOR1b LTR ERV1 -381 80 1 203 146 122 0 chr1 11738154 11738195 -230926158 + MER91B DNA MER1_type 18 63 -127 340 271 0 0 chr1 11738483 11738553 -230925800 + MER58 DNA MER1_type 3 72 -143 1402 181 0 0 chr1 11738553 11738796 -230925557 + L1MA9 LINE L1 5884 6126 -186 1091 174 11 26 chr1 11738800 11738990 -230925363 + AluJo SINE Alu 1 187 -125 4160 97 181 131 chr1 11738996 11740290 -230924063 + pTR5 LTR ERV1 743 2438 0 1580 149 4 4 chr1 11740302 11740544 -230923809 + AluSx SINE Alu 64 305 -7 688 215 49 18 chr1 11740544 11740707 -230923646 + AluJo/FRAM SINE Alu 134 301 -11 433 246 94 31 chr1 11740751 11740942 -230923411 + L1MA10 LINE L1 6119 6321 -13 308 208 9 51 chr1 11740947 11741063 -230923290 + MER58 DNA MER1_type 98 2409 -11 2453 81 0 3 chr1 11741472 11741780 -230922573 + AluY SINE Alu 1 307 -4 1223 132 52 5 chr1 11741843 11742055 -230922298 - AluSg/x SINE Alu -21 291 70 399 41 0 0 chr1 11742193 11742242 -230922111 + (GGGGA)n Simple_repeat Simple_repeat 2 50 0 300 239 60 34 chr1 11742255 11742372 -230921981 + L1ME4a LINE L1 3073 3192 -2954 427 255 159 36 chr1 11743060 11743489 -230920864 - L2 LINE L2 -97 3216 2737 2494 87 0 3 chr1 11743938 11744249 -230920104 - AluSx SINE Alu -2 310 1 519 299 153 26 chr1 11744918 11745040 -230919313 + L1ME4a LINE L1 5379 5484 -637 2400 104 0 0 chr1 11745040 11745347 -230919006 + AluSx SINE Alu 1 307 -5 519 299 153 26 chr1 11745347 11745445 -230918908 + L1ME4a LINE L1 5484 5568 -553 2187 117 0 7 chr1 11745445 11745743 -230918610 + AluSx SINE Alu 3 298 -14 519 299 153 26 chr1 11745743 11746176 -230918177 + L1ME4a LINE L1 5568 6116 -5 205 397 32 0 chr1 11747206 11747332 -230917021 - MIR3 SINE MIR -6 202 73 462 229 22 89 chr1 11747361 11747540 -230916813 - MER5A DNA MER1_type -20 169 3 351 269 11 0 chr1 11747772 11747865 -230916488 + MIR SINE MIR 24 117 -91 725 256 121 0 chr1 11747898 11748105 -230916248 - MIR SINE MIR -10 252 21 404 262 70 58 chr1 11748166 11748338 -230916015 - MIR SINE MIR -10 252 79 275 357 62 27 chr1 11748694 11748883 -230915470 - MIR SINE MIR -56 206 20 * 429 244 72 23 chr1 11748879 11749028 -230915325 - MIR3 SINE MIR -37 171 16 30 77 0 0 chr1 11751047 11751112 -230913241 + GC_rich Low_complexity Low_complexity 1 65 0 240 278 29 23 chr1 11751141 11751314 -230913039 + (CGGGG)n Simple_repeat Simple_repeat 1 174 0 263 340 71 0 chr1 11751938 11752079 -230912274 + MIR SINE MIR 46 196 -66 250 272 65 33 chr1 11753188 11753280 -230911073 + MIR SINE MIR 24 118 -90 218 341 0 33 chr1 11753975 11754066 -230910287 - MIR3 SINE MIR -114 94 7 610 244 44 19 chr1 11755099 11755259 -230909094 + MIR SINE MIR 87 250 -12 440 313 76 20 chr1 11755877 11756075 -230908278 + L2 LINE L2 2550 2758 -556 1125 227 71 32 chr1 11756077 11756585 -230907768 + MLT1E LTR MaLR 2 593 0 347 342 68 47 chr1 11756617 11757044 -230907309 + L2 LINE L2 2804 3239 -74 1831 161 0 35 chr1 11757046 11757356 -230906997 - AluJb SINE Alu -8 304 6 563 324 34 10 chr1 11758057 11758261 -230906092 + MIR SINE MIR 17 225 -37 182 282 105 89 chr1 11758326 11758450 -230905903 - L2 LINE L2 -11 3261 3136 253 296 82 31 chr1 11758883 11758981 -230905372 + L2 LINE L2 3170 3272 0 1978 119 0 38 chr1 11760201 11760524 -230903829 + AluY SINE Alu 2 313 0 514 226 203 0 chr1 11760530 11760707 -230903646 - MIR SINE MIR -16 246 34 412 278 0 35 chr1 11760703 11760818 -230903535 - L2 LINE L2 -1 3312 3202 * 2112 154 0 0 chr1 11760895 11761206 -230903147 - AluSx SINE Alu -1 311 1 236 200 20 0 chr1 11761551 11761601 -230902752 - MLT1L LTR MaLR -562 53 3 2425 94 0 0 chr1 11762060 11762359 -230901994 + AluSg SINE Alu 3 301 -9 198 314 10 111 chr1 11762531 11762738 -230901615 - L2 LINE L2 -190 3082 2897 183 250 54 18 chr1 11762779 11762835 -230901518 - MIR SINE MIR -133 75 18 2375 57 47 3 chr1 11763240 11763538 -230900815 - AluY SINE Alu 0 311 1 504 326 68 28 chr1 11763608 11763933 -230900420 + L1PB1 LINE L1 5582 5919 -232 * 1535 235 52 10 chr1 11763653 11764057 -230900296 + L1ME1 LINE L1 5632 6052 -114 1920 153 0 45 chr1 11764064 11764378 -230899975 + AluJb SINE Alu 1 300 -12 2568 37 0 3 chr1 11764381 11764676 -230899677 + AluY SINE Alu 1 294 -17 330 296 78 9 chr1 11764681 11764796 -230899557 + L1ME4a LINE L1 5824 5946 -175 235 338 76 55 chr1 11765477 11765622 -230898731 + L2 LINE L2 3105 3252 -20 2093 106 29 0 chr1 11765631 11765944 -230898409 - AluSx SINE Alu 0 321 1 233 75 25 0 chr1 11766140 11766180 -230898173 + (TC)n Simple_repeat Simple_repeat 2 42 0 2472 78 3 10 chr1 11766374 11766682 -230897671 + AluSp SINE Alu 1 306 -7 2626 56 0 3 chr1 11767241 11767546 -230896807 + AluY SINE Alu 1 304 -7 2421 43 0 46 chr1 11767827 11768132 -230896221 + AluY SINE Alu 1 291 -20 778 138 15 0 chr1 11768481 11768611 -230895742 - FLAM_C SINE Alu -1 132 1 464 183 39 0 chr1 11768718 11768822 -230895531 - L1MB7 LINE L1 -303 5881 5774 1913 136 31 7 chr1 11769011 11769297 -230895056 + AluSg SINE Alu 11 303 -7 2305 125 0 3 chr1 11769456 11769767 -230894586 - AluSx SINE Alu -2 310 1 1969 222 121 56 chr1 11769871 11770435 -230893918 + MER63D DNA MER1_type 1 527 -534 2346 125 0 0 chr1 11770435 11770747 -230893606 - AluSx SINE Alu 0 312 1 1969 222 121 56 chr1 11770747 11770932 -230893421 + MER63D DNA MER1_type 527 699 -362 491 15 0 31 chr1 11770932 11770997 -230893356 + (CTATT)n Simple_repeat Simple_repeat 3 65 0 1969 222 121 56 chr1 11770997 11771107 -230893246 + MER63D DNA MER1_type 699 917 -144 2426 104 0 0 chr1 11771134 11771441 -230892912 - AluSx SINE Alu -5 307 1 2316 153 31 27 chr1 11771447 11771752 -230892601 - L1MB5 LINE L1 -37 6137 5828 1531 157 33 62 chr1 11771752 11772057 -230892296 - AluJo SINE Alu -16 296 1 2316 153 31 27 chr1 11772057 11772197 -230892156 - L1MB5 LINE L1 -346 5828 5690 717 182 42 0 chr1 11772197 11772340 -230892013 + MER63D DNA MER1_type 908 1056 -4 412 301 30 24 chr1 11772365 11772531 -230891822 + MIR3 SINE MIR 13 179 -29 696 232 49 22 chr1 11772687 11772911 -230891442 + MER31A LTR ERV1 256 485 0 1974 101 87 7 chr1 11773222 11773510 -230890843 - AluSx SINE Alu -1 311 1 278 71 24 0 chr1 11773534 11773576 -230890777 - MER21B LTR ERV1 -202 661 619 342 335 63 6 chr1 11774672 11774830 -230889523 - MIR SINE MIR -49 213 47 2585 84 0 0 chr1 11775276 11775587 -230888766 - AluSp SINE Alu 0 313 3 1075 83 0 0 chr1 11775591 11775723 -230888630 - AluSp SINE Alu -181 132 1 1634 232 71 63 chr1 11775763 11776198 -230888155 + MLT1F LTR MaLR 1 442 -100 2386 101 0 3 chr1 11776198 11776505 -230887848 - AluSq SINE Alu -7 306 1 1634 232 71 63 chr1 11776505 11776607 -230887746 + MLT1F LTR MaLR 442 542 0 305 224 0 0 chr1 11776830 11776888 -230887465 - MER91B DNA MER1_type -130 60 3 310 308 29 96 chr1 11777102 11777342 -230887011 + MIR SINE MIR 6 229 -33 573 225 0 9 chr1 11777351 11777462 -230886891 - FLAM_C SINE Alu -28 115 6 1904 152 3 19 chr1 11778304 11778620 -230885733 + AluJo SINE Alu 1 311 -1 243 319 97 19 chr1 11779053 11779269 -230885084 - L2 LINE L2 -129 3184 2952 374 229 52 0 chr1 11779270 11779366 -230884987 - MER45A DNA AcHobo -1 177 77 230 257 220 37 chr1 11779391 11779609 -230884744 - L2 LINE L2 -351 2963 2706 829 163 0 34 chr1 11779609 11779756 -230884597 - FLAM_C SINE Alu -1 142 1 2134 88 88 3 chr1 11779765 11780049 -230884304 - AluSq SINE Alu -5 308 1 2367 76 10 3 chr1 11780049 11780339 -230884014 - AluSc SINE Alu -17 292 1 181 333 11 11 chr1 11780342 11780435 -230883918 - L2 LINE L2 -601 2713 2621 2206 123 0 13 chr1 11781801 11782103 -230882250 - AluSq SINE Alu -15 298 1 537 260 32 26 chr1 11782295 11782449 -230881904 - MIR SINE MIR -56 206 52 2392 99 0 0 chr1 11782570 11782874 -230881479 - AluY SINE Alu -6 305 2 1331 245 136 21 chr1 11782925 11783411 -230880942 - MLT1F LTR MaLR 0 542 1 2114 49 53 0 chr1 11783462 11783739 -230880614 + AluY SINE Alu 21 310 0 677 280 52 13 chr1 11784249 11784481 -230879872 - MIR SINE MIR -15 247 7 1952 70 117 0 chr1 11784797 11785080 -230879273 + AluSp SINE Alu 1 313 0 2478 80 0 3 chr1 11785561 11785862 -230878491 + AluSg SINE Alu 1 300 -10 1199 227 127 30 chr1 11786067 11786428 -230877925 - MSTD LTR MaLR 0 396 1 1998 172 0 0 chr1 11786832 11787129 -230877224 - AluJo SINE Alu -15 297 1 393 303 0 0 chr1 11787133 11787222 -230877131 + L1MC4 LINE L1 6615 6703 -1339 658 188 161 61 chr1 11787259 11787520 -230876833 + MER113 DNA MER1_type? 119 405 -116 707 234 84 92 chr1 11787840 11788362 -230875991 + L1M4 LINE L1 563 1080 -5039 294 117 78 78 chr1 11788395 11788472 -230875881 + MIR SINE MIR 183 259 -3 628 289 52 102 chr1 11788536 11788879 -230875474 + L1M4 LINE L1 3272 3597 -2532 242 216 0 68 chr1 11788908 11788924 -230875429 + L1M4 LINE L1 4252 4268 -1861 1100 201 142 15 chr1 11788924 11789192 -230875161 + AluJb SINE Alu 1 302 0 237 269 0 0 chr1 11789140 11789207 -230875146 + AluJo SINE Alu 85 151 -151 * 242 216 0 68 chr1 11789192 11789218 -230875135 + L1M4 LINE L1 4268 4294 -1835 1793 139 0 12 chr1 11789218 11789470 -230874883 + AluSg SINE Alu 46 294 -16 242 216 0 68 chr1 11789470 11789514 -230874839 + L1M4 LINE L1 4294 4333 -1796 882 300 63 31 chr1 11789543 11789617 -230874736 + L1M4 LINE L1 4716 4786 -1375 2341 60 0 30 chr1 11789617 11789918 -230874435 + AluY SINE Alu 2 293 -18 882 300 63 31 chr1 11789918 11790556 -230873797 + L1M4 LINE L1 4786 5446 -715 293 231 264 33 chr1 11790559 11790680 -230873673 + MIR SINE MIR 4 152 -110 764 186 9 95 chr1 11790894 11791002 -230873351 - Charlie2 DNA MER1_type 0 2862 2783 2087 91 3 10 chr1 11791002 11791299 -230873054 + AluSg SINE Alu 1 295 -15 764 186 9 95 chr1 11791299 11791421 -230872932 - Charlie2 DNA MER1_type -79 2783 2652 2228 85 0 3 chr1 11791487 11791781 -230872572 - AluSg SINE Alu -17 293 1 247 250 0 0 chr1 11791785 11791849 -230872504 - Charlie2 DNA MER1_type -377 2485 2422 2320 83 0 3 chr1 11792237 11792550 -230871803 + AluSp SINE Alu 1 312 -1 2140 110 7 0 chr1 11794209 11794519 -230869834 + AluSp SINE Alu 1 312 -1 555 317 77 5 chr1 11794532 11794753 -230869600 + MIR SINE MIR 26 262 0 985 214 96 102 chr1 11794905 11794941 -230869412 - Charlie2 DNA MER1_type -473 2389 2354 2280 84 3 0 chr1 11794941 11795237 -230869116 - AluSp SINE Alu -16 297 1 985 214 96 102 chr1 11795237 11795760 -230868593 - Charlie2 DNA MER1_type -508 2354 1833 401 181 181 29 chr1 11795762 11795841 -230868512 - Tigger7 DNA MER2_type 0 2587 2487 2024 144 26 15 chr1 11795841 11795908 -230868445 - MER2 DNA MER2_type 0 344 279 1609 154 24 14 chr1 11795908 11796200 -230868153 + AluSx SINE Alu 1 295 -17 2024 144 26 15 chr1 11796200 11796471 -230867882 - MER2 DNA MER2_type -65 279 2 401 181 181 29 chr1 11796471 11796496 -230867857 - Tigger7 DNA MER2_type -100 2487 2467 441 125 0 12 chr1 11796513 11796592 -230867761 - Tigger7 DNA MER2_type -77 2410 2333 1695 166 181 55 chr1 11796592 11797079 -230867274 + LTR10A LTR ERV1 1 548 -61 1048 204 43 132 chr1 11797088 11797439 -230866914 + LTR10A-int LTR ERV1 1 317 -6335 387 238 117 0 chr1 11797445 11797589 -230866764 + LTR10A-int LTR ERV1 288 792 -7420 846 163 111 62 chr1 11797782 11798170 -230866183 + LTR7 LTR ERV1 1 450 0 8129 197 37 35 chr1 11798170 11801049 -230863304 + HERVH LTR ERV1 1 2830 -3792 4284 130 5 88 chr1 11801049 11801854 -230862499 + HERVH LTR ERV1 3357 4094 -3619 * 12186 95 5 1 chr1 11801843 11803483 -230860870 + HERVH LTR ERV1 4370 6016 -1697 3340 120 14 42 chr1 11803476 11804049 -230860304 + HERVH LTR ERV1 7157 7713 0 * 1298 168 207 44 chr1 11804049 11804436 -230859917 + LTR7 LTR ERV1 1 450 0 212 186 17 0 chr1 11804685 11804744 -230859609 + GA-rich Low_complexity Low_complexity 2 61 0 308 184 39 0 chr1 11804778 11804881 -230859472 + GA-rich Low_complexity Low_complexity 2 108 0 5611 96 18 41 chr1 11804881 11805314 -230859039 + HERV17 LTR ERV1 704 1145 -5751 2272 69 0 3 chr1 11805314 11805603 -230858750 + AluY SINE Alu 1 288 -23 5611 96 18 41 chr1 11805603 11806248 -230858105 + HERV17 LTR ERV1 1145 1718 -5178 267 274 167 0 chr1 11806248 11806332 -230858021 - LTR8 LTR ERV1 -434 257 160 11824 156 12 20 chr1 11806339 11809514 -230854839 + Harlequin LTR ERV1 1804 6647 -2 1843 142 127 43 chr1 11809558 11809975 -230854378 + LTR10A LTR ERV1 97 548 -61 1836 137 42 118 chr1 11809988 11810335 -230854018 - MER44D DNA MER2_type -2033 454 90 1437 163 41 41 chr1 11810335 11810630 -230853723 - AluJb SINE Alu -17 295 1 1836 137 42 118 chr1 11810630 11810713 -230853640 - MER44D DNA MER2_type -2397 90 2 670 235 50 0 chr1 11810716 11810895 -230853458 - Charlie2a DNA MER1_type -1033 1829 1642 2264 82 16 0 chr1 11810899 11811203 -230853150 - AluSp SINE Alu 0 313 5 580 240 0 0 chr1 11811217 11811338 -230853015 - FLAM_A SINE Alu -10 132 12 2184 45 0 31 chr1 11811353 11811691 -230852662 - AluY SINE Alu 0 329 1 478 176 155 7 chr1 11811704 11811846 -230852507 - Charlie2a DNA MER1_type -1214 1648 1486 1721 161 10 0 chr1 11811851 11812143 -230852210 - AluJo SINE Alu -17 295 1 1249 256 141 44 chr1 11812229 11812648 -230851705 - Charlie2b DNA MER1_type -2112 670 180 2067 125 3 0 chr1 11812648 11812952 -230851401 - AluSx SINE Alu -7 305 1 1249 256 141 44 chr1 11812952 11813099 -230851254 - Charlie2b DNA MER1_type -2602 180 49 384 315 51 35 chr1 11813147 11813344 -230851009 + L2 LINE L2 3113 3312 -1 2215 73 0 0 chr1 11815103 11815406 -230848947 + AluSc SINE Alu 5 307 0 266 316 0 0 chr1 11816124 11816203 -230848150 + Charlie2 DNA MER1_type 46 124 -2658 860 140 7 0 chr1 11816214 11816350 -230848003 - FLAM_C SINE Alu -6 137 1 2396 69 3 0 chr1 11816356 11816660 -230847693 - AluSp SINE Alu -8 305 1 274 167 24 119 chr1 11816722 11816806 -230847547 + Charlie2 DNA MER1_type 204 279 -2583 2133 204 66 0 chr1 11816873 11817315 -230847038 - LTR51 LTR ERV1 0 671 201 23 33 0 0 chr1 11817424 11817454 -230846899 + AT_rich Low_complexity Low_complexity 1 30 0 1521 179 4 15 chr1 11817459 11817732 -230846621 - AluJo SINE Alu -35 277 8 868 142 41 41 chr1 11818137 11818306 -230846047 + MER5A DNA MER1_type 6 174 -15 219 229 16 84 chr1 11819463 11819546 -230844807 - MER5A DNA MER1_type -72 106 29 44 35 0 0 chr1 11820291 11820349 -230844004 + AT_rich Low_complexity Low_complexity 1 58 0 370 273 87 31 chr1 11821726 11821887 -230842466 + L2 LINE L2 3140 3309 -4 22 0 0 0 chr1 11823538 11823560 -230840793 + AT_rich Low_complexity Low_complexity 1 22 0 1894 109 56 0 chr1 11823562 11823847 -230840506 + AluSg SINE Alu 1 301 -9 195 42 0 0 chr1 11824907 11824931 -230839422 + (CA)n Simple_repeat Simple_repeat 2 25 0 312 206 76 54 chr1 11825341 11825433 -230838920 - L1MCa LINE L1 -4355 2071 1978 28 0 0 0 chr1 11825435 11825463 -230838890 + AT_rich Low_complexity Low_complexity 1 28 0 1749 131 51 0 chr1 11825466 11825741 -230838612 - AluJb SINE Alu -23 289 1 276 276 81 11 chr1 11825788 11825875 -230838478 - L2 LINE L2 -8 3264 3172 432 316 93 0 chr1 11826275 11826512 -230837841 - MIR SINE MIR 0 262 4 240 35 0 0 chr1 11826620 11826649 -230837704 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1902 121 0 0 chr1 11826649 11826929 -230837424 - AluSx SINE Alu -32 280 1 2239 80 0 0 chr1 11827743 11828031 -230836322 - AluSg SINE Alu -12 298 11 2013 145 17 20 chr1 11828148 11828499 -230835854 - L1MB7 LINE L1 -19 6165 5816 808 201 0 0 chr1 11828507 11828656 -230835697 - FRAM SINE Alu -23 153 5 2338 189 72 41 chr1 11828661 11829345 -230835008 - L1MB7 LINE L1 -569 5605 4874 2402 59 3 3 chr1 11829345 11829648 -230834705 - AluSp SINE Alu -10 303 1 2338 189 72 41 chr1 11829648 11829858 -230834495 - L1MB7 LINE L1 -1300 4874 4672 207 279 66 66 chr1 11830947 11831083 -230833270 - L2 LINE L2 -43 3270 3135 362 296 56 21 chr1 11831331 11831473 -230832880 + MIR SINE MIR 10 156 -106 2407 63 0 28 chr1 11831504 11831823 -230832530 + AluY SINE Alu 2 311 0 2220 103 0 3 chr1 11832714 11833016 -230831337 + AluSx SINE Alu 1 301 -11 256 154 0 0 chr1 11833437 11833476 -230830877 - 5S rRNA rRNA -79 42 4 599 326 11 11 chr1 11834635 11834825 -230829528 + MIR SINE MIR 59 248 -14 2098 109 0 0 chr1 11834825 11835108 -230829245 + AluSg SINE Alu 1 283 -27 186 43 0 0 chr1 11835108 11835131 -230829222 + (TA)n Simple_repeat Simple_repeat 1 23 0 421 302 8 16 chr1 11835924 11836053 -230828300 + LTR67 LTR ERVL 428 555 -2 203 206 247 14 chr1 11836075 11836148 -230828205 + L2 LINE L2 3211 3300 -13 237 108 0 0 chr1 11836149 11836186 -230828167 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 843 85 115 0 chr1 11836668 11836798 -230827555 - L1PA13 LINE L1 -376 5787 5643 2255 123 57 8 chr1 11836800 11837166 -230827187 + L1PA13 LINE L1 5778 6161 -2 238 308 122 14 chr1 11837434 11837655 -230826698 + L2 LINE L2 2454 2698 -616 1589 208 30 14 chr1 11837685 11838050 -230826303 + MLT1A2 LTR MaLR 2 372 -2 1024 163 6 0 chr1 11838244 11838410 -230825943 + MSTB LTR MaLR 1 167 -259 497 306 97 54 chr1 11838735 11839388 -230824965 + L2 LINE L2 2299 3022 -250 21 36 0 0 chr1 11839847 11839875 -230824478 + AT_rich Low_complexity Low_complexity 1 28 0 189 286 63 63 chr1 11840227 11840353 -230824000 - MIR SINE MIR -78 184 59 312 228 13 13 chr1 11840628 11840707 -230823646 - MER103 DNA DNA -66 100 22 2290 57 57 0 chr1 11841872 11842153 -230822200 + AluY SINE Alu 1 297 -14 239 246 0 18 chr1 11842693 11842750 -230821603 + CT-rich Low_complexity Low_complexity 2 57 0 410 266 112 89 chr1 11842881 11843275 -230821078 + MLT1J LTR MaLR 25 427 -84 2162 114 3 3 chr1 11845223 11845520 -230818833 + AluSg1 SINE Alu 1 297 -12 434 263 35 29 chr1 11845601 11845772 -230818581 - MIR SINE MIR -13 249 78 350 89 0 0 chr1 11845901 11845949 -230818404 - MLT2D LTR ERVL -6 391 349 317 241 0 19 chr1 11845950 11846058 -230818295 + (TATATG)n Simple_repeat Simple_repeat 1 106 0 253 215 0 15 chr1 11846059 11846093 -230818260 + (TG)n Simple_repeat Simple_repeat 2 36 -29 1235 181 97 28 chr1 11846093 11846413 -230817940 - MER2 DNA MER2_type -1 343 2 253 215 0 15 chr1 11846413 11846443 -230817910 + (TG)n Simple_repeat Simple_repeat 36 65 0 1306 109 0 0 chr1 11846473 11846647 -230817706 + AluSq SINE Alu 130 303 -10 1031 212 82 20 chr1 11846908 11847153 -230817200 - MLT2D LTR ERVL -143 271 12 6431 34 1 1 chr1 11847253 11848519 -230815834 + L1PA4 LINE L1 4750 6015 -140 3632 80 2 25 chr1 11849213 11849724 -230814629 + L1PA4 LINE L1 5657 6155 0 1864 116 116 0 chr1 11851637 11851930 -230812423 + MER41C LTR ERV1 228 554 0 7525 113 35 15 chr1 11852018 11853156 -230811197 + MER41C-int LTR ERV1 4 1164 -6592 236 98 0 24 chr1 11853929 11853970 -230810383 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 314 299 30 8 chr1 11854532 11854666 -230809687 - MER5A DNA MER1_type -38 151 15 249 288 15 0 chr1 11855356 11855422 -230808931 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 304 176 56 56 chr1 11855754 11855862 -230808491 + MLT1K LTR MaLR 395 502 -86 1083 161 0 0 chr1 11855901 11856069 -230808284 - AluSg/x SINE Alu 0 310 143 488 232 1 0 chr1 11856172 11856296 -230808057 - L1M4 LINE L1 -448 5726 5602 246 263 188 23 chr1 11856794 11856927 -230807426 - MLT1H1 LTR MaLR -335 220 66 1437 97 5 0 chr1 11857328 11857514 -230806839 + AluSx SINE Alu 1 187 -125 2234 105 0 0 chr1 11857905 11858199 -230806154 - AluSx SINE Alu -18 294 1 2149 151 30 30 chr1 11859738 11860102 -230804251 - THE1B LTR MaLR 0 364 1 2264 99 10 0 chr1 11860636 11860938 -230803415 - AluSx SINE Alu -7 305 1 200 210 109 80 chr1 11861565 11861703 -230802650 + L2 LINE L2 2487 2628 -686 2473 182 23 49 chr1 11862158 11862686 -230801667 - MLT2B2 LTR ERVL -1 514 1 1005 126 0 0 chr1 11862884 11863019 -230801334 + AluSq/x SINE Alu 1 135 -178 2015 142 0 0 chr1 11863019 11863340 -230801013 + AluSx SINE Alu 1 321 0 4116 134 17 36 chr1 11863340 11864033 -230800320 + L1PA16 LINE L1 5486 6165 -1 280 275 50 50 chr1 11864440 11864600 -230799753 - MER113 DNA MER1_type? -49 472 313 268 86 0 0 chr1 11864710 11864745 -230799608 + Alu SINE Alu 1 35 -267 390 268 100 45 chr1 11865234 11865439 -230798914 - MLT1J2 LTR MaLR 0 409 238 940 270 72 13 chr1 11865484 11865788 -230798565 - L1MC4a LINE L1 0 7808 7487 624 177 0 0 chr1 11865811 11865907 -230798446 - FLAM_A SINE Alu -26 116 21 226 307 69 0 chr1 11865922 11866023 -230798330 - L1MC4 LINE L1 -467 7575 7468 2443 96 0 0 chr1 11866084 11866396 -230797957 - AluSq SINE Alu -1 312 1 1327 159 12 84 chr1 11866396 11866717 -230797636 - L1MB1 LINE L1 -14 6154 5857 7255 225 22 11 chr1 11866817 11869102 -230795251 + L1MB2 LINE L1 1457 3748 -2398 3838 178 12 0 chr1 11869224 11869905 -230794448 + L1MB2 LINE L1 5476 6164 -7 21 36 0 0 chr1 11869905 11869933 -230794420 + AT_rich Low_complexity Low_complexity 1 28 0 1002 235 52 54 chr1 11870253 11870323 -230794030 + L1M4 LINE L1 2626 2695 -3451 1583 106 0 5 chr1 11870323 11870531 -230793822 - AluSq SINE Alu -106 207 1 1002 235 52 54 chr1 11870531 11870847 -230793506 + L1M4 LINE L1 2695 3011 -3135 1105 231 15 68 chr1 11871089 11871166 -230793187 + MER49 LTR ERV1 555 634 -289 1796 130 17 47 chr1 11871166 11871305 -230793048 + AluSx SINE Alu 7 149 -163 2407 71 3 0 chr1 11871305 11871601 -230792752 + AluY SINE Alu 1 297 -14 1796 130 17 47 chr1 11871601 11871761 -230792592 + AluSx SINE Alu 149 297 -15 1105 231 15 68 chr1 11871761 11872007 -230792346 + MER49 LTR ERV1 634 861 -62 764 145 38 23 chr1 11872022 11872153 -230792200 - FLAM_C SINE Alu 0 133 1 1305 101 6 6 chr1 11872167 11872345 -230792008 - AluSg/x SINE Alu -14 296 119 1941 177 75 60 chr1 11872561 11872935 -230791418 + L1PA15 LINE L1 5688 6072 -93 1739 148 59 3 chr1 11872935 11873225 -230791128 + AluSx SINE Alu 1 306 -6 1941 177 75 60 chr1 11873225 11873314 -230791039 + L1PA15 LINE L1 6072 6158 -7 1663 242 90 0 chr1 11873311 11873700 -230790653 - L1M3f LINE L1 -4362 966 543 * 633 123 41 23 chr1 11874513 11874757 -230789596 + AluSx SINE Alu 1 309 0 2286 116 3 0 chr1 11874759 11875069 -230789284 + AluSp SINE Alu 1 311 -2 591 212 9 0 chr1 11875480 11875593 -230788760 + AluJb SINE Alu 3 116 -196 2090 134 0 3 chr1 11877657 11877956 -230786397 - AluSx SINE Alu -14 298 1 1073 79 0 29 chr1 11877956 11878095 -230786258 - AluSq/x SINE Alu -178 135 1 2634 55 0 10 chr1 11878431 11878743 -230785610 - AluY SINE Alu -2 309 1 189 74 0 0 chr1 11879465 11879492 -230784861 + (TAA)n Simple_repeat Simple_repeat 3 29 0 278 284 49 88 chr1 11879750 11879954 -230784399 + Charlie8 DNA MER1_type 9 204 -2213 2731 108 12 5 chr1 11881139 11881547 -230782806 + L1PB2 LINE L1 5741 6151 0 944 308 119 52 chr1 11881548 11882466 -230781887 + L2 LINE L2 1697 2675 -639 1737 127 88 0 chr1 11882866 11883151 -230781202 - AluSx SINE Alu 0 308 1 375 253 44 44 chr1 11883337 11883389 -230780964 - MIR SINE MIR -4 258 207 2046 148 0 19 chr1 11883389 11883699 -230780654 - AluSx SINE Alu -8 304 1 375 253 44 44 chr1 11883699 11883804 -230780549 - MIR SINE MIR -54 208 101 545 274 6 12 chr1 11884011 11884175 -230780178 + LTR33 LTR ERVL 4 166 -355 1185 233 16 46 chr1 11884270 11884643 -230779710 + MER20B DNA MER1_type 417 778 -5 1086 224 75 25 chr1 11884646 11884967 -230779386 - MER58B DNA MER1_type -2 339 3 203 307 57 29 chr1 11885928 11886068 -230778285 + L2 LINE L2 3008 3151 -162 239 229 66 0 chr1 11887759 11887820 -230776533 - LTR33 LTR ERVL -126 395 331 364 286 153 51 chr1 11887871 11888067 -230776286 - LTR33 LTR ERVL -305 216 1 2058 66 4 26 chr1 11888364 11888637 -230775716 + AluY SINE Alu 44 310 -1 772 205 7 0 chr1 11889016 11889167 -230775186 - MLT1B LTR MaLR -105 285 134 1108 255 19 11 chr1 11889168 11889492 -230774861 - MER93b LTR ERV1 0 373 61 465 180 60 0 chr1 11889601 11889701 -230774652 - MLT1B LTR MaLR -256 134 29 2516 119 11 16 chr1 11889706 11890083 -230774270 + THE1C LTR MaLR 1 375 0 432 298 36 18 chr1 11890280 11890448 -230773905 + MER5B DNA MER1_type 6 176 -2 335 247 17 107 chr1 11890460 11890638 -230773715 + MER5B DNA MER1_type 17 178 0 546 222 44 56 chr1 11890732 11890912 -230773441 + MER5B DNA MER1_type 1 178 0 473 157 0 0 chr1 11891177 11891247 -230773106 - AluSg/x SINE Alu -106 206 137 2251 110 0 13 chr1 11891384 11891694 -230772659 + AluSc SINE Alu 3 308 -1 911 111 0 0 chr1 11891720 11891837 -230772516 + AluSg SINE Alu 1 117 -193 180 111 0 0 chr1 11891980 11892007 -230772346 + (A)n Simple_repeat Simple_repeat 1 27 0 1837 94 45 0 chr1 11892104 11892349 -230772004 + AluSx SINE Alu 1 256 -56 420 251 86 74 chr1 11892415 11892590 -230771763 - L1MEd LINE L1 -5712 407 231 2474 75 3 0 chr1 11892678 11892984 -230771369 - AluY SINE Alu -3 308 2 307 89 0 0 chr1 11893086 11893131 -230771222 + HERV9 LTR ERV1 1005 1049 -7577 * 1960 105 7 14 chr1 11893118 11893412 -230770941 + HERV9 LTR ERV1 1275 4405 -3380 957 141 0 12 chr1 11893385 11893548 -230770805 + HERV9 LTR ERV1 1580 1740 -5156 * 646 49 0 0 chr1 11893546 11893627 -230770726 + HERV9 LTR ERV1 7626 7706 -693 * 2256 63 0 0 chr1 11893727 11894080 -230770273 - L1PA8A LINE L1 -596 5535 5183 2611 118 96 0 chr1 11894086 11894494 -230769859 - MER41C LTR ERV1 -107 447 1 18885 103 8 9 chr1 11894494 11897111 -230767242 - MER41C-int LTR ERV1 0 7756 5141 1640 112 0 9 chr1 11897111 11897343 -230767010 - MER41C-int LTR ERV1 -3133 4623 4394 * 2693 89 84 0 chr1 11897338 11897719 -230766634 - PRIMA41-int LTR ERV1 -4701 3055 2643 18152 88 2 0 chr1 11897819 11900214 -230764139 - L1P LINE L1 -3746 2400 1 6459 80 7 64 chr1 11900237 11901775 -230762578 - SVA Other Other -590 1385 433 1851 154 26 3 chr1 11901918 11902223 -230762130 - AluSx SINE Alu 0 312 1 301 283 168 0 chr1 11902699 11902812 -230761541 - L2 LINE L2 -3 3310 3179 2201 97 3 13 chr1 11902918 11903218 -230761135 - AluSc SINE Alu -12 297 1 2142 109 7 0 chr1 11903280 11903565 -230760788 - AluSx SINE Alu 0 312 26 227 327 20 65 chr1 11903582 11903735 -230760618 + L2 LINE L2 3164 3309 -4 2134 119 10 0 chr1 11904278 11904571 -230759782 - AluSq SINE Alu -17 296 1 1102 206 61 4 chr1 11904592 11904839 -230759514 - MER31B LTR ERV1 0 466 206 1885 167 0 0 chr1 11905269 11905563 -230758790 - AluSx SINE Alu -18 294 1 2190 68 0 8 chr1 11905980 11906246 -230758107 + AluY SINE Alu 30 293 -18 1935 107 4 22 chr1 11906502 11906774 -230757579 - AluSx SINE Alu -45 267 1 834 164 0 0 chr1 11906803 11906925 -230757428 + FLAM_C SINE Alu 1 122 -21 26 0 0 0 chr1 11906925 11906951 -230757402 + AT_rich Low_complexity Low_complexity 1 26 0 198 171 0 0 chr1 11906978 11907019 -230757334 + GA-rich Low_complexity Low_complexity 4 44 0 1994 119 0 4 chr1 11907041 11907310 -230757043 + AluSq SINE Alu 35 302 -11 2281 108 0 0 chr1 11907499 11907794 -230756559 - AluSg SINE Alu -15 295 1 192 200 0 0 chr1 11908052 11908092 -230756261 + (TG)n Simple_repeat Simple_repeat 1 40 0 2279 106 0 0 chr1 11909475 11909767 -230754586 - AluSc SINE Alu -17 292 1 1863 133 48 48 chr1 11909856 11910150 -230754203 - AluSq SINE Alu -19 294 1 934 163 0 68 chr1 11910367 11910557 -230753796 + FRAM SINE Alu 1 176 0 23 33 0 0 chr1 11911217 11911247 -230753106 + AT_rich Low_complexity Low_complexity 1 30 0 477 161 12 0 chr1 11911309 11911390 -230752963 - MER6B DNA MER2_type -1 209 128 * 696 171 0 0 chr1 11911360 11911471 -230752882 - MER6B DNA MER2_type -165 111 1 184 161 247 25 chr1 11911532 11911613 -230752740 - MER5C DNA MER1_type 0 324 226 276 186 71 106 chr1 11911633 11911669 -230752684 - MER5C DNA MER1_type -200 124 88 2351 100 0 0 chr1 11911669 11911970 -230752383 + AluSq SINE Alu 1 301 -12 276 186 71 106 chr1 11911970 11912046 -230752307 - MER5C DNA MER1_type -236 88 16 245 347 140 0 chr1 11912235 11912428 -230751925 + L2 LINE L2 2815 3034 -279 1540 162 79 7 chr1 11912459 11912750 -230751603 - LTR10B LTR ERV1 0 505 176 1004 192 49 5 chr1 11912846 11913049 -230751304 + MER58A DNA MER1_type 5 216 -8 333 263 38 65 chr1 11913082 11913268 -230751085 + L2 LINE L2 3111 3291 -22 2934 122 30 26 chr1 11913275 11913631 -230750722 - L1MB2 LINE L1 -2 6169 5809 2207 104 13 3 chr1 11913631 11913939 -230750414 + AluSp SINE Alu 1 311 -2 2934 122 30 26 chr1 11913939 11914081 -230750272 - L1MB2 LINE L1 -362 5809 5669 2448 75 0 0 chr1 11914786 11915094 -230749259 + AluY SINE Alu 2 309 -2 2644 151 36 4 chr1 11915115 11915592 -230748761 + L1MB3 LINE L1 5684 6175 -8 252 213 66 0 chr1 11916911 11916972 -230747381 - MLT1J LTR MaLR 0 511 447 180 0 0 0 chr1 11917721 11917741 -230746612 + (T)n Simple_repeat Simple_repeat 1 20 0 1013 134 114 124 chr1 11918353 11918651 -230745702 + AluJo SINE Alu 2 296 -6 2240 104 10 7 chr1 11919126 11919434 -230744919 - AluSc SINE Alu 0 309 1 6084 90 16 8 chr1 11920066 11921108 -230743245 - Harlequin LTR ERV1 0 8399 504 1153 120 3 7 chr1 11921106 11921444 -230742909 - Harlequin LTR ERV1 -5156 1740 1363 * 370 193 8 126 chr1 11921732 11921782 -230742571 - MER5C DNA MER1_type -200 124 94 2405 94 0 0 chr1 11921782 11922079 -230742274 - AluSq SINE Alu -16 297 1 370 193 8 126 chr1 11922079 11922147 -230742206 - MER5C DNA MER1_type -230 94 20 1019 300 24 39 chr1 11922193 11922231 -230742122 - L2 LINE L2 0 3313 3276 1659 136 103 81 chr1 11922231 11922650 -230741703 - MSTA LTR MaLR 0 428 1 1019 300 24 39 chr1 11922650 11923214 -230741139 - L2 LINE L2 -37 3276 2723 2648 222 2 14 chr1 11923288 11923796 -230740557 + MLT1F LTR MaLR 26 527 -15 320 281 0 0 chr1 11924264 11924346 -230740007 - L2 LINE L2 0 3313 3232 1059 195 67 158 chr1 11924480 11924773 -230739580 - MLT1A1 LTR MaLR 0 365 154 2599 68 0 0 chr1 11924773 11925082 -230739271 + AluY SINE Alu 1 309 -2 1059 195 67 158 chr1 11925082 11925224 -230739129 - MLT1A1 LTR MaLR -211 154 1 325 270 54 107 chr1 11925414 11925757 -230738596 - L2 LINE L2 -247 3066 2749 630 241 70 26 chr1 11926722 11926950 -230737403 + MLT1L LTR MaLR 149 386 -229 1372 114 92 13 chr1 11927089 11927317 -230737036 - MSTB1 LTR MaLR 0 432 187 2690 97 0 0 chr1 11927317 11927666 -230736687 - HSMAR1 DNA Mariner -1 1286 938 664 173 9 0 chr1 11927783 11927893 -230736460 - FLAM_C SINE Alu -22 121 11 543 260 85 25 chr1 11927986 11928340 -230736013 - L1M4 LINE L1 -2680 3466 3092 2406 83 0 0 chr1 11929116 11929405 -230734948 + AluSg SINE Alu 5 293 -17 1124 132 0 0 chr1 11930049 11930208 -230734145 + FRAM SINE Alu 1 155 -21 1073 189 15 5 chr1 11930248 11930444 -230733909 - AluJb SINE Alu -28 284 87 379 181 0 36 chr1 11930516 11930599 -230733754 - MER116 DNA Mariner 0 80 1 7795 79 5 41 chr1 11930623 11931735 -230732618 - MER11C LTR ERVK 0 1071 1 2075 144 0 7 chr1 11931860 11932165 -230732188 + AluJb SINE Alu 1 303 -9 2324 83 10 0 chr1 11933579 11933868 -230730485 + AluSc SINE Alu 1 292 -17 851 269 174 30 chr1 11934053 11934615 -230729738 - L1M4 LINE L1 -1979 4167 3525 1289 69 0 98 chr1 11934750 11934953 -230729400 + Charlie3 DNA MER1_type 2524 2706 -4 * 1326 163 135 76 chr1 11934951 11935232 -230729121 - MLT1C LTR MaLR -46 421 109 919 83 0 30 chr1 11935232 11935365 -230728988 - FLAM_C SINE Alu 0 133 5 1326 163 135 76 chr1 11935365 11935476 -230728877 - MLT1C LTR MaLR -358 109 6 1906 135 45 0 chr1 11935594 11935883 -230728470 - AluJb SINE Alu -10 302 1 2285 104 0 3 chr1 11936495 11936794 -230727559 + AluSg SINE Alu 6 303 -7 3991 181 40 12 chr1 11936924 11937392 -230726961 - L1MB3 LINE L1 -155 6028 5574 589 216 9 9 chr1 11937392 11937530 -230726823 - FLAM_A SINE Alu 0 139 2 3991 181 40 12 chr1 11937530 11938231 -230726122 - L1MB3 LINE L1 -609 5574 4822 304 296 43 0 chr1 11939288 11939403 -230724950 + MIR3 SINE MIR 82 201 -7 266 256 44 7 chr1 11939788 11939925 -230724428 + (TA)n Simple_repeat Simple_repeat 1 142 0 2517 85 0 0 chr1 11941013 11941320 -230723033 + AluSx SINE Alu 1 307 -5 1106 60 0 8 chr1 11941320 11941453 -230722900 + AluY SINE Alu 1 132 -179 833 254 106 106 chr1 11941828 11941870 -230722483 + MLT1K LTR MaLR 2 43 -545 2218 108 3 0 chr1 11941870 11942165 -230722188 - AluSx SINE Alu -14 298 3 833 254 106 106 chr1 11942165 11942399 -230721954 + MLT1K LTR MaLR 43 276 -312 2218 97 0 17 chr1 11942399 11942697 -230721656 - AluSp SINE Alu -20 293 1 833 254 106 106 chr1 11942697 11943006 -230721347 + MLT1K LTR MaLR 275 588 0 5890 41 0 3 chr1 11943100 11943802 -230720551 + L1PA8 LINE L1 5469 6168 -4 21 36 0 0 chr1 11943994 11944022 -230720331 + AT_rich Low_complexity Low_complexity 1 28 0 697 218 0 0 chr1 11944460 11944593 -230719760 + FLAM_A SINE Alu 1 133 0 2484 62 10 0 chr1 11944648 11944952 -230719401 + AluY SINE Alu 1 307 -4 2350 116 0 0 chr1 11944962 11945272 -230719081 + AluSg SINE Alu 1 310 0 2309 103 0 10 chr1 11945697 11946008 -230718345 - AluSx SINE Alu -4 308 1 180 135 0 0 chr1 11946129 11946166 -230718187 + (A)n Simple_repeat Simple_repeat 1 37 0 721 0 0 0 chr1 11946325 11946440 -230717913 + L1PA3 LINE L1 6071 6185 0 345 314 39 0 chr1 11947586 11947688 -230716665 + MER81 DNA DNA 9 114 0 2071 114 34 0 chr1 11947774 11948071 -230716282 + AluSx SINE Alu 1 307 -5 1112 113 39 87 chr1 11948875 11949105 -230715248 + MER20 DNA MER1_type 1 219 0 502 160 6 141 chr1 11949123 11949279 -230715074 - L1MB8 LINE L1 -84 6094 5960 259 150 25 0 chr1 11949318 11949377 -230714976 - MIR SINE MIR -68 140 94 1139 196 0 60 chr1 11949419 11949588 -230714765 - MER58A DNA MER1_type -2196 224 71 1914 105 10 61 chr1 11949588 11949884 -230714469 + AluSg SINE Alu 21 301 -9 1139 196 0 60 chr1 11949884 11949949 -230714404 - MER58A DNA MER1_type -2349 71 4 254 241 71 62 chr1 11950238 11950350 -230714003 - L1MB8 LINE L1 -340 5822 5710 740 133 83 0 chr1 11950405 11950525 -230713828 - FLAM_C SINE Alu -1 132 3 450 223 45 109 chr1 11950569 11950789 -230713564 + MIR SINE MIR 25 230 -32 3014 114 7 14 chr1 11950872 11951309 -230713044 - MER57B LTR ERV1 0 434 1 210 158 0 0 chr1 11951376 11951414 -230712939 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 516 104 99 28 chr1 11951718 11951847 -230712506 - THE1C LTR MaLR 0 375 211 2740 180 15 21 chr1 11951994 11952674 -230711679 - L1MB5 LINE L1 -265 5909 5227 1824 150 21 3 chr1 11952674 11952961 -230711392 - AluJb SINE Alu -20 292 1 2740 180 15 21 chr1 11952961 11953135 -230711218 - L1MB5 LINE L1 -947 5227 5054 1606 103 4 30 chr1 11953135 11953367 -230710986 - AluSp SINE Alu -9 304 79 2740 180 15 21 chr1 11953367 11953402 -230710951 - L1MB5 LINE L1 -1120 5054 5020 2584 115 58 19 chr1 11953402 11953812 -230710541 - MSTB LTR MaLR 0 426 1 2740 180 15 21 chr1 11953812 11954005 -230710348 - L1MB5 LINE L1 -1154 5020 4768 689 225 0 0 chr1 11954005 11954125 -230710228 - FLAM_A SINE Alu -9 124 5 2568 166 25 53 chr1 11954139 11954701 -230709652 - L1MA9 LINE L1 -36 6276 5731 461 180 20 50 chr1 11954698 11954798 -230709555 - L1MB5 LINE L1 -1367 4779 4683 * 297 174 0 0 chr1 11954812 11954858 -230709495 + Charlie5 DNA MER1_type 361 406 -2206 * 479 154 22 22 chr1 11954851 11954942 -230709411 + Charlie5 DNA MER1_type 2534 2624 0 2822 72 6 6 chr1 11955241 11955603 -230708750 - THE1B LTR MaLR 0 364 3 306 267 158 12 chr1 11955639 11955804 -230708549 - MLT1L LTR MaLR -422 193 5 2254 99 3 3 chr1 11956715 11957007 -230707346 - AluSc SINE Alu -17 292 1 1413 224 29 7 chr1 11957053 11957334 -230707019 + AluJb SINE Alu 1 287 -25 2555 54 0 3 chr1 11957515 11957812 -230706541 - AluY SINE Alu -15 296 1 215 273 30 0 chr1 11957864 11957930 -230706423 - L2 LINE L2 -4 3268 3201 415 245 58 101 chr1 11957960 11958168 -230706185 - MIR SINE MIR -25 237 40 2476 109 34 0 chr1 11958188 11958538 -230705815 - THE1C LTR MaLR -13 362 1 195 317 85 24 chr1 11958578 11958660 -230705693 - L2 LINE L2 -181 3091 3005 1624 173 73 12 chr1 11959349 11959691 -230704662 + MER47A DNA MER2_type 1 363 -3 255 255 202 0 chr1 11960059 11960153 -230704200 + L2 LINE L2 3160 3272 0 225 256 22 22 chr1 11960548 11960638 -230703715 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 464 140 4 25 chr1 11960751 11961009 -230703344 + AluSq SINE Alu 1 309 -4 2129 104 7 0 chr1 11961317 11961621 -230702732 - AluSx SINE Alu 0 306 1 837 225 31 64 chr1 11961650 11961968 -230702385 + MLT2D LTR ERVL 83 391 -73 1463 173 36 0 chr1 11962361 11962609 -230701744 - AluSq SINE Alu -13 300 44 778 209 6 31 chr1 11962673 11962836 -230701517 - FRAM SINE Alu -5 161 3 29 0 0 0 chr1 11963442 11963471 -230700882 + AT_rich Low_complexity Low_complexity 1 29 0 2552 42 0 29 chr1 11963478 11963785 -230700568 + AluY SINE Alu 1 298 -13 2486 87 3 0 chr1 11963880 11964192 -230700161 + AluSq SINE Alu 1 313 0 1602 260 32 40 chr1 11964986 11965265 -230699088 - LTR33 LTR ERVL -2 519 244 2418 85 0 3 chr1 11965265 11965560 -230698793 + AluSx SINE Alu 1 294 -18 1602 260 32 40 chr1 11965560 11965803 -230698550 - LTR33 LTR ERVL -277 244 1 432 135 203 0 chr1 11966166 11966240 -230698113 + 5S rRNA rRNA 1 89 -32 691 194 0 30 chr1 11966251 11966385 -230697968 + FLAM_A SINE Alu 2 131 -2 274 296 62 0 chr1 11966617 11966698 -230697655 - L2 LINE L2 -29 3284 3199 213 329 109 16 chr1 11966697 11967019 -230697334 - L2 LINE L2 -1098 2216 1865 * 2379 66 0 7 chr1 11967376 11967685 -230696668 - AluY SINE Alu 0 307 1 2114 245 158 9 chr1 11967782 11968857 -230695496 + L2 LINE L2 2075 3313 0 259 247 35 24 chr1 11970296 11970381 -230693972 - MIR SINE MIR -77 131 46 681 125 10 10 chr1 11970383 11970487 -230693866 - FLAM_A SINE Alu -19 123 20 2155 98 10 10 chr1 11970907 11971204 -230693149 + AluSc SINE Alu 1 297 -12 1546 101 0 0 chr1 11971771 11971970 -230692383 + AluSc SINE Alu 1 199 -110 5149 99 10 28 chr1 11972939 11973004 -230691349 - HSMAR1 DNA Mariner -573 714 649 2154 54 47 39 chr1 11973004 11973308 -230691045 - AluY SINE Alu 0 306 1 5149 99 10 28 chr1 11973308 11973968 -230690385 - HSMAR1 DNA Mariner -638 649 1 1101 143 16 21 chr1 11973968 11974157 -230690196 - MSTB1 LTR MaLR -244 188 1 352 316 125 6 chr1 11974416 11974584 -230689769 + MIR SINE MIR 3 190 -72 2246 70 0 20 chr1 11974625 11974927 -230689426 - AluY SINE Alu -15 296 1 1808 124 68 45 chr1 11974928 11975308 -230689045 - Charlie1 DNA MER1_type -27 2734 2346 2388 74 3 0 chr1 11975621 11975920 -230688433 + AluSc SINE Alu 1 300 -9 370 155 0 0 chr1 11976740 11976798 -230687555 - Alu SINE Alu -1 300 243 2286 78 92 9 chr1 11977944 11978279 -230686074 - L1PA14 LINE L1 -5 6156 5794 318 268 45 58 chr1 11978391 11978641 -230685712 - L1MC4 LINE L1 -393 7649 7293 2398 64 0 7 chr1 11978845 11979143 -230685210 - AluY SINE Alu -15 296 1 680 209 9 65 chr1 11979144 11979377 -230684976 - L1MC4a LINE L1 -714 7165 6957 733 272 95 59 chr1 11979435 11979819 -230684534 - L1MC4 LINE L1 -858 6950 6581 2268 103 3 0 chr1 11979819 11980120 -230684233 - AluSq SINE Alu -9 304 3 733 272 95 59 chr1 11980120 11980786 -230683567 - L1MC4 LINE L1 -1227 6581 5857 2150 129 3 0 chr1 11980786 11981095 -230683258 - AluSx SINE Alu -2 310 1 733 272 95 59 chr1 11981095 11981629 -230682724 - L1MC4 LINE L1 -1951 5857 5344 776 151 0 27 chr1 11982383 11982529 -230681824 - AluSg/x SINE Alu -5 305 164 295 264 169 22 chr1 11982853 11983031 -230681322 - L1ME4a LINE L1 -164 5957 5754 946 187 28 6 chr1 11983872 11984054 -230680299 - MER20 DNA MER1_type 0 219 34 207 244 0 0 chr1 11989610 11989651 -230674702 + (CGTG)n Simple_repeat Simple_repeat 4 44 0 2156 126 0 3 chr1 11989863 11990156 -230674197 - AluSx SINE Alu -20 292 1 337 285 95 15 chr1 11990158 11990295 -230674058 + MIR SINE MIR 94 241 -21 217 313 16 0 chr1 11990557 11990621 -230673732 - L2 LINE L2 -15 3298 3234 1768 200 97 34 chr1 11991288 11991763 -230672590 + MLT1D LTR MaLR 1 505 0 446 145 0 0 chr1 11991893 11991969 -230672384 - MSTA LTR MaLR -352 76 1 923 299 34 37 chr1 11991972 11992545 -230671808 - L2 LINE L2 -37 3276 2709 2652 222 2 14 chr1 11992606 11993114 -230671239 + MLT1F LTR MaLR 26 527 -15 181 269 74 56 chr1 11993115 11993223 -230671130 - L2 LINE L2 -55 3258 3149 337 293 0 0 chr1 11993597 11993679 -230670674 - L2 LINE L2 0 3313 3232 1062 205 0 5 chr1 11993813 11994008 -230670345 - MLT1A1 LTR MaLR 0 365 172 380 123 0 110 chr1 11994032 11994105 -230670248 - MLT1A1 LTR MaLR -172 193 129 2228 68 0 32 chr1 11994106 11994417 -230669936 + AluY SINE Alu 1 301 -10 1717 101 65 14 chr1 11994425 11994703 -230669650 + AluSg SINE Alu 2 293 -17 1837 164 0 0 chr1 12045016 12045321 -230619032 + AluSx SINE Alu 1 305 -7 1672 179 0 3 chr1 12045805 12046101 -230618252 + AluSx SINE Alu 1 295 -17 749 161 21 28 chr1 12046110 12046253 -230618100 - FLAM_C SINE Alu 0 143 2 182 230 27 81 chr1 12047441 12047515 -230616838 + L2 LINE L2 3202 3271 -1 2096 116 3 0 chr1 12049176 12049487 -230614866 + AluSx SINE Alu 1 312 0 1266 234 0 7 chr1 12049628 12049936 -230614417 + AluJb SINE Alu 1 306 -6 854 206 8 124 chr1 12050023 12050156 -230614197 + AluJo SINE Alu 3 93 -219 2024 151 0 0 chr1 12050156 12050467 -230613886 + AluSx SINE Alu 1 311 -1 854 206 8 124 chr1 12050467 12050590 -230613763 + AluJo SINE Alu 93 229 -83 374 234 0 12 chr1 12050698 12050781 -230613572 - AluS SINE Alu -231 70 1 937 210 32 0 chr1 12051296 12051515 -230612838 - AluSg/x SINE Alu -2 308 83 793 254 0 15 chr1 12053493 12053694 -230610659 - AluJb SINE Alu -99 213 16 1288 57 4 18 chr1 12053695 12053921 -230610432 + (TTTC)n Simple_repeat Simple_repeat 1 223 0 1659 174 17 0 chr1 12053935 12054229 -230610124 - AluY SINE Alu -10 301 3 1477 188 7 3 chr1 12054809 12055102 -230609251 + AluSx SINE Alu 5 298 -14 26 0 0 0 chr1 12056144 12056170 -230608183 + AT_rich Low_complexity Low_complexity 1 26 0 1803 144 3 0 chr1 12056468 12056753 -230607600 - AluSq SINE Alu -25 288 3 735 237 0 0 chr1 12056831 12057000 -230607353 - AluSx SINE Alu -15 297 129 571 192 0 0 chr1 12057019 12057123 -230607230 - AluSx SINE Alu -17 293 190 759 194 0 0 chr1 12057123 12057257 -230607096 - AluSx SINE Alu -176 136 3 21 71 0 0 chr1 12060531 12060573 -230603780 + AT_rich Low_complexity Low_complexity 1 42 0 440 210 17 42 chr1 12060581 12060700 -230603653 - FLAM_C SINE Alu -17 116 1 1278 247 0 0 chr1 12061084 12061371 -230602982 - AluSx SINE Alu -7 305 19 5700 226 35 77 chr1 12062080 12063706 -230600647 + MER52A LTR ERV1 61 1749 -6 935 250 11 0 chr1 12063709 12064047 -230600306 + L1 LINE L1 3441 3785 -3780 2615 244 9 63 chr1 12064103 12065049 -230599304 + L1 LINE L1 5374 6268 -1297 1369 265 44 40 chr1 12065203 12065479 -230598874 - MER41E LTR ERV1 -22 490 208 1983 122 3 0 chr1 12065479 12065793 -230598560 - AluSp SINE Alu 0 315 1 1369 265 44 40 chr1 12065793 12065990 -230598363 - MER41E LTR ERV1 -304 208 13 396 111 0 0 chr1 12066113 12066176 -230598177 + (TTCCC)n Simple_repeat Simple_repeat 2 64 0 1159 69 0 16 chr1 12066189 12066433 -230597920 + (TTTC)n Simple_repeat Simple_repeat 1 240 0 18636 83 2 0 chr1 12066434 12069738 -230594615 - L1PA7 LINE L1 -18 6136 2827 1082 54 0 27 chr1 12069738 12069879 -230594474 - L1PA4 LINE L1 0 6155 6013 1538 44 0 0 chr1 12069879 12070060 -230594293 + L1PA4 LINE L1 5803 5983 -172 * 22025 77 1 0 chr1 12070056 12072888 -230591465 - L1PA7 LINE L1 -3306 2840 8 833 194 7 0 chr1 12072893 12073032 -230591321 - AluSq/x SINE Alu -170 142 3 196 293 67 40 chr1 12073205 12073280 -230591073 - L2 LINE L2 -27 3245 3169 2472 219 104 19 chr1 12073332 12073998 -230590355 + L1MC1 LINE L1 5601 6322 -11 1474 170 0 57 chr1 12073999 12074282 -230590071 + AluSx SINE Alu 1 267 -45 1341 187 0 0 chr1 12074286 12074539 -230589814 + AluJb SINE Alu 58 310 0 1917 120 0 3 chr1 12074708 12074991 -230589362 - AluSg SINE Alu -28 282 1 1620 124 43 4 chr1 12075112 12075369 -230588984 - AluSg SINE Alu -43 267 1 1915 141 3 3 chr1 12075383 12075687 -230588666 - AluSp SINE Alu -9 304 1 379 248 78 16 chr1 12076022 12076151 -230588202 - MIR SINE MIR -9 253 117 1380 190 48 7 chr1 12076900 12077189 -230587164 + AluJo SINE Alu 3 303 -9 1640 159 7 33 chr1 12077189 12077490 -230586863 + AluSp SINE Alu 1 294 -19 1847 161 0 0 chr1 12078755 12079054 -230585299 + AluSx SINE Alu 6 304 -8 1672 179 0 3 chr1 12079538 12079834 -230584519 + AluSx SINE Alu 1 295 -17 727 168 21 28 chr1 12079843 12079986 -230584367 - FLAM_C SINE Alu 0 143 2 1733 121 71 0 chr1 12081047 12081328 -230583025 - AluSx SINE Alu -11 301 1 492 194 31 6 chr1 12082326 12082486 -230581867 + CT-rich Low_complexity Low_complexity 2 165 0 1332 192 7 31 chr1 12082486 12082773 -230581580 - AluJb SINE Alu -32 280 1 1562 177 0 0 chr1 12082890 12083150 -230581203 + AluSx SINE Alu 1 260 -52 736 181 0 56 chr1 12083588 12083748 -230580605 - AluSg/x SINE Alu -16 294 144 1209 187 112 11 chr1 12083823 12083968 -230580385 - AluJb SINE Alu -14 298 169 1643 159 0 37 chr1 12083968 12084263 -230580090 + AluSx SINE Alu 7 290 -22 1209 187 112 11 chr1 12084263 12084384 -230579969 - AluJb SINE Alu -143 169 5 1721 163 20 0 chr1 12084964 12085270 -230579083 + AluSx SINE Alu 1 312 0 848 161 0 0 chr1 12085707 12085844 -230578509 - AluSg/x SINE Alu -36 276 140 1403 188 3 52 chr1 12085926 12086112 -230578241 - AluJb SINE Alu -15 297 130 1687 154 0 39 chr1 12086112 12086417 -230577936 + AluSx SINE Alu 1 293 -19 1403 188 3 52 chr1 12086417 12086538 -230577815 - AluJb SINE Alu -182 130 5 1547 169 10 24 chr1 12087115 12087411 -230576942 + AluSx SINE Alu 5 296 -16 2819 207 60 2 chr1 12087781 12088351 -230576002 + LTR26 LTR ERV1 1 603 0 887 201 167 17 chr1 12088439 12088727 -230575626 + LTR44 LTR ERV1 6 336 -183 343 129 16 16 chr1 12088805 12088867 -230575486 + Alu SINE Alu 247 308 0 1813 145 0 11 chr1 12088868 12089188 -230575165 + AluSc SINE Alu 1 317 0 1911 138 0 3 chr1 12089540 12089855 -230574498 - AluSc SINE Alu 0 314 1 232 197 16 0 chr1 12089910 12089971 -230574382 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1818 136 4 0 chr1 12089973 12090252 -230574101 - AluSq SINE Alu -21 292 13 315 0 0 0 chr1 12090620 12090655 -230573698 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1737 127 14 0 chr1 12090655 12090930 -230573423 - AluSx SINE Alu -33 279 1 300 286 62 27 chr1 12091387 12091499 -230572854 - L1M4 LINE L1 -3104 3042 2927 1599 143 6 89 chr1 12093239 12093378 -230570975 + AluJb SINE Alu 5 105 -207 1773 142 0 4 chr1 12093378 12093659 -230570694 - AluSx SINE Alu -32 280 1 1599 143 6 89 chr1 12093659 12093697 -230570656 + AluJb SINE Alu 105 293 -19 844 124 15 22 chr1 12093697 12093834 -230570519 + FRAM SINE Alu 22 157 -19 1816 136 3 0 chr1 12094079 12094366 -230569987 + AluSx SINE Alu 1 288 -24 1830 157 14 0 chr1 12095029 12095323 -230569030 - AluSg SINE Alu -10 300 3 246 173 93 53 chr1 12095333 12095408 -230568945 + LTR45B LTR ERV1 412 489 0 1608 166 90 134 chr1 12096481 12097024 -230567329 - LTR44 LTR ERV1 0 519 1 507 231 82 34 chr1 12097171 12097379 -230566974 - MER65A LTR ERV1 -17 428 211 2753 199 65 5 chr1 12097512 12098081 -230566272 - LTR26 LTR ERV1 0 603 1 1650 153 10 23 chr1 12098452 12098752 -230565601 - AluSx SINE Alu -16 296 1 1381 172 3 71 chr1 12099323 12099447 -230564906 + AluJb SINE Alu 5 136 -176 1539 149 10 43 chr1 12099447 12099749 -230564604 - AluSx SINE Alu -20 292 1 1381 172 3 71 chr1 12099749 12099950 -230564403 + AluJb SINE Alu 136 308 -4 736 199 7 0 chr1 12100017 12100153 -230564200 + AluSg/x SINE Alu 140 276 -36 1759 161 23 0 chr1 12100602 12100906 -230563447 - AluSx SINE Alu -1 311 1 307 292 53 26 chr1 12101359 12101472 -230562881 - L1M4 LINE L1 -3104 3042 2927 1301 189 3 59 chr1 12101479 12101600 -230562753 + AluJb SINE Alu 5 131 -181 1643 153 0 42 chr1 12101600 12101908 -230562445 - AluSx SINE Alu -17 295 1 1301 189 3 59 chr1 12101908 12102092 -230562261 + AluJb SINE Alu 131 293 -19 838 183 0 0 chr1 12102168 12102305 -230562048 + AluSg/x SINE Alu 140 276 -36 1456 194 11 0 chr1 12102746 12103019 -230561334 - AluSx SINE Alu -36 276 1 1295 180 22 32 chr1 12103140 12103418 -230560935 + AluJb SINE Alu 6 280 -32 426 201 34 7 chr1 12103418 12103567 -230560786 + GA-rich Low_complexity Low_complexity 2 154 0 1687 128 69 0 chr1 12104569 12104857 -230559496 + AluSx SINE Alu 1 308 -4 721 165 23 23 chr1 12105918 12106051 -230558302 + FLAM_C SINE Alu 1 133 0 1874 142 0 3 chr1 12106071 12106367 -230557986 - AluSx SINE Alu -17 295 1 1892 157 0 0 chr1 12106853 12107158 -230557195 - AluSx SINE Alu -7 305 1 1634 159 7 33 chr1 12108418 12108720 -230555633 - AluSp SINE Alu -19 294 1 1405 188 48 7 chr1 12108720 12109012 -230555341 - AluJo SINE Alu -7 305 1 356 256 78 16 chr1 12109753 12109882 -230554471 + MIR SINE MIR 117 253 -9 2100 117 0 3 chr1 12110217 12110524 -230553829 + AluSp SINE Alu 1 306 -7 1658 117 43 4 chr1 12110535 12110792 -230553561 + AluSg SINE Alu 1 267 -43 1971 109 0 3 chr1 12110913 12111196 -230553157 + AluSg SINE Alu 1 282 -28 1649 169 0 28 chr1 12111365 12111703 -230552650 - AluJb SINE Alu 0 330 1 1901 135 0 50 chr1 12111708 12112027 -230552326 - AluSx SINE Alu -9 303 1 2675 209 98 21 chr1 12112028 12112727 -230551626 - L1MC1 LINE L1 -11 6322 5583 195 293 67 40 chr1 12112749 12112824 -230551529 + L2 LINE L2 3169 3245 -27 1684 182 3 3 chr1 12112994 12113362 -230550991 + AluSx SINE Alu 1 368 0 945 224 35 9 chr1 12114391 12114619 -230549734 - AluJb SINE Alu -18 294 61 1995 150 0 0 chr1 12114706 12115012 -230549341 - AluSx SINE Alu -2 310 5 2577 116 122 59 chr1 12115083 12115227 -230549126 + LTR61 LTR ERV1 1 135 -460 221 0 35 0 chr1 12115227 12115256 -230549097 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2577 116 122 59 chr1 12115256 12115670 -230548683 + LTR61 LTR ERV1 135 594 -1 6726 195 39 15 chr1 12115670 12117376 -230546977 + HERV15 LTR ERV1 1 1648 -6778 487 160 20 10 chr1 12117381 12117481 -230546872 + LTR5 LTR ERVK 868 968 -1 14841 181 15 15 chr1 12117483 12119621 -230544732 + HERV3 LTR ERV1 3701 5842 -2584 1914 126 3 23 chr1 12119621 12119931 -230544422 - AluY SINE Alu -7 304 1 14841 181 15 15 chr1 12119931 12120315 -230544038 + HERV3 LTR ERV1 5842 6224 -2202 1462 142 9 0 chr1 12120315 12120541 -230543812 - AluSg SINE Alu -82 228 1 282 319 26 0 chr1 12120541 12120657 -230543696 - Tigger6 DNA MER2_type -365 1232 1114 228 289 11 0 chr1 12120925 12121015 -230543338 + (TAG)n Simple_repeat Simple_repeat 1 91 0 444 82 0 0 chr1 12121952 12122013 -230542340 + (TA)n Simple_repeat Simple_repeat 2 62 0 289 247 21 10 chr1 12122026 12122123 -230542230 - GSATX Satellite centromeric -120 98 1 * 919 213 37 18 chr1 12122038 12123440 -230540913 - GSATII Satellite centromeric -7 1427 1 * 1577 198 38 3 chr1 12123438 12123729 -230540624 - MER52A LTR ERV1 -71 1207 1099 321 314 16 24 chr1 12123773 12123897 -230540456 - MER52A LTR ERV1 -1582 173 51 1432 203 3 3 chr1 12124608 12124903 -230539450 + AluSx SINE Alu 18 312 0 645 193 0 0 chr1 12125318 12125432 -230538921 + AluJb SINE Alu 3 116 -196 383 172 5 3 chr1 12128886 12129078 -230535275 + AluSx SINE Alu 3 248 -52 817 209 14 19 chr1 12129078 12129111 -230535242 + AluSg/x SINE Alu 83 115 -194 324 0 0 0 chr1 12129111 12129147 -230535206 + (TAA)n Simple_repeat Simple_repeat 2 37 0 817 209 14 19 chr1 12129147 12129328 -230535025 + AluSg/x SINE Alu 115 296 -13 370 178 0 4 chr1 12129384 12129459 -230534894 + AluS SINE Alu 6 58 -245 29 0 0 0 chr1 12129799 12129828 -230534525 + AT_rich Low_complexity Low_complexity 1 29 0 333 283 44 18 chr1 12129842 12129955 -230534398 + L1M4 LINE L1 2927 3042 -3104 1502 211 3 10 chr1 12131420 12131724 -230532629 + AluJb SINE Alu 1 302 -10 237 65 0 0 chr1 12131724 12131755 -230532598 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 1032 42 60 0 chr1 12131778 12131945 -230532408 + GA-rich Low_complexity Low_complexity 4 180 0 3295 192 3 7 chr1 12132792 12133395 -230530958 + HERVE LTR ERV1 983 1583 -6230 445 167 0 0 chr1 12133602 12133668 -230530685 - AluS SINE Alu -243 67 2 650 311 57 36 chr1 12133680 12133822 -230530531 + L1M4 LINE L1 3581 3719 -2427 1781 162 33 0 chr1 12133822 12134124 -230530229 - AluSx SINE Alu 0 312 1 650 311 57 36 chr1 12134124 12134189 -230530164 + L1M4 LINE L1 3719 3781 -2365 2067 129 3 0 chr1 12134189 12134499 -230529854 + AluSp SINE Alu 1 311 -2 650 311 57 36 chr1 12134499 12134676 -230529677 + L1M4 LINE L1 3781 3974 -2172 529 268 71 94 chr1 12134800 12134869 -230529484 + MIR SINE MIR 15 84 -178 1583 88 5 0 chr1 12134869 12135085 -230529268 + AluY SINE Alu 82 298 -13 529 268 71 94 chr1 12135085 12135269 -230529084 + MIR SINE MIR 84 262 0 1941 135 3 0 chr1 12135381 12135677 -230528676 + AluSx SINE Alu 1 297 -15 1802 152 14 0 chr1 12136335 12136625 -230527728 - AluSg SINE Alu -16 294 1 857 214 34 15 chr1 12137560 12137903 -230526450 + GSATII Satellite centromeric 1 349 -60 1686 138 4 0 chr1 12137903 12138164 -230526189 + AluSp SINE Alu 50 311 -2 318 263 98 8 chr1 12138188 12138321 -230526032 + L1M4 LINE L1 3808 3952 -2194 805 147 0 63 chr1 12140061 12140204 -230524149 - AluJo SINE Alu -170 142 9 1767 161 23 0 chr1 12140329 12140634 -230523719 + AluSx SINE Alu 1 312 0 225 0 0 0 chr1 12140634 12140659 -230523694 + (GA)n Simple_repeat Simple_repeat 2 26 0 818 188 0 0 chr1 12141085 12141229 -230523124 - AluSg/x SINE Alu -29 283 140 1280 185 3 100 chr1 12141310 12141529 -230522824 - AluJb SINE Alu 0 312 136 1493 182 0 21 chr1 12141529 12141815 -230522538 + AluSx SINE Alu 13 292 -20 1280 185 3 100 chr1 12141815 12141936 -230522417 - AluJb SINE Alu -176 136 5 1747 164 7 0 chr1 12142509 12142819 -230521534 + AluSx SINE Alu 1 312 0 2904 206 45 2 chr1 12143187 12143765 -230520588 + LTR26 LTR ERV1 1 603 0 671 209 81 24 chr1 12143900 12144111 -230520242 + MER65A LTR ERV1 211 433 -12 1632 167 86 134 chr1 12144257 12144802 -230519551 + LTR44 LTR ERV1 1 519 0 250 247 34 22 chr1 12145601 12145690 -230518663 - MER110-int LTR ERV1 -1383 6154 6065 274 112 49 55 chr1 12145870 12145945 -230518408 - LTR45B LTR ERV1 0 525 412 1940 147 14 0 chr1 12145953 12146238 -230518115 + AluSg SINE Alu 1 289 -21 254 343 68 43 chr1 12146255 12146535 -230517818 - MER110-int LTR ERV1 -2209 2438 2152 247 237 17 0 chr1 12146850 12146909 -230517444 + MER94 DNA DNA 13 72 -62 1920 146 3 0 chr1 12146918 12147206 -230517147 - AluSx SINE Alu -23 289 1 802 185 20 20 chr1 12147447 12147598 -230516755 - AluJb SINE Alu -19 293 143 3037 194 18 10 chr1 12147598 12148216 -230516137 + LTR5 LTR ERVK 1 623 -346 616 174 30 8 chr1 12148336 12148468 -230515885 + LTR5 LTR ERVK 835 969 0 1758 166 0 3 chr1 12148497 12148780 -230515573 + AluSx SINE Alu 1 282 -30 783 172 0 0 chr1 12148794 12148916 -230515437 - FLAM_C SINE Alu -17 126 5 1766 161 14 0 chr1 12151223 12151509 -230512844 + AluSx SINE Alu 1 290 -22 27 0 0 0 chr1 12151666 12151693 -230512660 + AT_rich Low_complexity Low_complexity 1 27 0 2963 193 60 2 chr1 12151887 12152457 -230511896 + LTR26 LTR ERV1 1 603 0 508 243 97 5 chr1 12152592 12152777 -230511576 + MER65A LTR ERV1 211 412 -33 1507 168 91 131 chr1 12152954 12153495 -230510858 + LTR44 LTR ERV1 1 519 0 1851 189 46 8 chr1 12253797 12254168 -230410185 + MSTB1 LTR MaLR 48 432 0 187 189 27 0 chr1 12254420 12254457 -230409896 - L2 LINE L2 0 3272 3235 377 316 59 21 chr1 12254567 12254754 -230409599 + MIR SINE MIR 23 216 -46 930 142 0 0 chr1 12254988 12255115 -230409238 + FLAM_C SINE Alu 1 127 -6 369 240 75 20 chr1 12255247 12255393 -230408960 + L2 LINE L2 2740 2893 -421 267 300 92 8 chr1 12255578 12255698 -230408655 + L2 LINE L2 3136 3265 -7 7655 26 5 0 chr1 12255879 12257205 -230407148 - L1PA4 LINE L1 -5 6150 4820 203 309 0 62 chr1 12257300 12257381 -230406972 + L2 LINE L2 3195 3270 -2 1888 184 7 0 chr1 12257387 12257697 -230406656 + AluJb SINE Alu 1 312 0 305 348 0 0 chr1 12257909 12257998 -230406355 - MIR SINE MIR -118 144 56 391 221 13 0 chr1 12258226 12258303 -230406050 + MIR SINE MIR 32 109 -153 878 201 66 108 chr1 12258370 12258945 -230405408 + MER34B LTR ERV1 1 514 -28 1658 116 162 12 chr1 12259238 12259497 -230404856 - AluSg1 SINE Alu -11 298 1 194 211 0 0 chr1 12259503 12259541 -230404812 - L2 LINE L2 -570 2744 2707 836 214 0 0 chr1 12259661 12259806 -230404547 + AluJb SINE Alu 148 292 -20 1989 259 31 22 chr1 12259856 12260504 -230403849 + L1M4 LINE L1 997 1650 -4892 238 244 122 0 chr1 12260592 12260674 -230403679 + LTR10B LTR ERV1 194 285 -262 1215 204 40 25 chr1 12260737 12261012 -230403341 + LTR10B LTR ERV1 269 547 0 532 175 0 10 chr1 12261037 12261140 -230403213 + L1M4 LINE L1 4026 4127 -2517 * 1791 142 25 6 chr1 12261138 12261456 -230402897 + L1M4 LINE L1 5961 6284 -398 1589 130 13 74 chr1 12261460 12261759 -230402594 - MLT2B3 LTR ERVL 0 554 274 1951 121 24 34 chr1 12261905 12262203 -230402150 + AluSx SINE Alu 1 295 -17 1296 139 6 4 chr1 12262212 12262443 -230401910 + L1M3 LINE L1 5579 5819 -361 228 250 0 16 chr1 12262443 12262507 -230401846 + MLT1F1 LTR MaLR 110 172 -395 242 107 143 0 chr1 12262568 12262624 -230401729 + MLT1F1 LTR MaLR 176 239 -328 2610 112 18 0 chr1 12262970 12263353 -230401000 - L1PA15 LINE L1 -2 6163 5774 970 238 42 45 chr1 12263521 12263738 -230400615 + MLT1F1 LTR MaLR 283 500 -67 2615 41 3 28 chr1 12263738 12264057 -230400296 - AluY SINE Alu 0 311 1 970 238 42 45 chr1 12264057 12264125 -230400228 + MLT1F1 LTR MaLR 500 567 0 1917 176 13 3 chr1 12264178 12264485 -230399868 - AluJb SINE Alu -2 310 1 2318 112 0 3 chr1 12264749 12265062 -230399291 + AluSq SINE Alu 1 312 -1 3379 90 2 5 chr1 12265154 12265599 -230398754 + MLT2A1 LTR ERVL 1 444 0 1772 176 10 21 chr1 12265724 12266014 -230398339 + AluJo SINE Alu 13 299 -13 3038 303 43 22 chr1 12266029 12267232 -230397121 + ERVL LTR ERVL 1595 2823 -2941 414 305 108 65 chr1 12267349 12267661 -230396692 - LTR41 LTR ERVL -333 440 110 2375 85 0 13 chr1 12267661 12267967 -230396386 + AluY SINE Alu 1 302 -9 414 305 108 65 chr1 12267967 12268005 -230396348 - LTR41 LTR ERVL -663 110 75 269 172 0 47 chr1 12268006 12268070 -230396283 - LTR40b LTR ERVL 0 462 402 1036 241 53 8 chr1 12268095 12268360 -230395993 - LTR40b LTR ERVL -33 429 153 5857 88 8 13 chr1 12268379 12269233 -230395120 - L1PA8 LINE L1 0 6172 5323 4838 111 3 1 chr1 12269230 12269980 -230394373 + L1P LINE L1 4516 5266 -880 * 813 229 28 0 chr1 12269987 12270166 -230394187 - LTR40a LTR ERVL -331 188 5 841 193 32 27 chr1 12270170 12270357 -230393996 - HERVL40 LTR ERVL 0 5530 5343 459 248 26 0 chr1 12270370 12270487 -230393866 - HERVL68 LTR ERVL -135 2902 2783 269 261 14 109 chr1 12270719 12270778 -230393575 - HERVL68 LTR ERVL -328 2709 2669 1667 188 0 58 chr1 12270778 12271108 -230393245 + AluJb SINE Alu 2 312 0 269 261 14 109 chr1 12271108 12271186 -230393167 - HERVL68 LTR ERVL -368 2669 2585 2986 312 47 7 chr1 12271234 12271311 -230393042 - ERVL LTR ERVL -2591 3173 3101 189 0 0 0 chr1 12271311 12271332 -230393021 + (CAGG)n Simple_repeat Simple_repeat 1 21 0 2986 312 47 7 chr1 12271332 12272397 -230391956 - ERVL LTR ERVL -2663 3101 1985 234 143 71 0 chr1 12272535 12272577 -230391776 + LTR50 LTR ERVL 751 795 0 2073 227 84 49 chr1 12272831 12273404 -230390949 + MLT1E LTR MaLR 1 593 0 2319 99 0 3 chr1 12273808 12274100 -230390253 + AluSg SINE Alu 6 296 -14 249 219 193 35 chr1 12275730 12275844 -230388509 - MIR SINE MIR -50 212 81 2491 68 0 10 chr1 12276092 12276403 -230387950 + AluY SINE Alu 1 308 -3 872 174 0 28 chr1 12276410 12276554 -230387799 + AluJb SINE Alu 126 265 -47 2165 106 36 0 chr1 12276959 12277260 -230387093 + AluSx SINE Alu 1 312 0 1774 181 31 17 chr1 12278025 12278379 -230385974 + MLT1A1 LTR MaLR 5 363 -2 217 159 23 23 chr1 12278829 12278873 -230385480 - MIR SINE MIR -86 122 79 260 242 29 117 chr1 12279389 12279629 -230384724 - L1ME1 LINE L1 -247 5919 5701 715 253 18 6 chr1 12280329 12280495 -230383858 + MER5B DNA MER1_type 1 168 -10 497 208 110 87 chr1 12280622 12280687 -230383666 - MER5B DNA MER1_type -1 177 115 2395 75 0 0 chr1 12280687 12280965 -230383388 + AluSg SINE Alu 13 290 -20 497 208 110 87 chr1 12280965 12281072 -230383281 - MER5B DNA MER1_type -63 115 1 326 282 141 81 chr1 12281116 12281200 -230383153 + L2 LINE L2 2873 2950 -322 1296 183 88 45 chr1 12281200 12281369 -230382984 + MER96B DNA MER1_type 2 162 -255 2008 125 0 34 chr1 12281369 12281499 -230382854 + AluJo SINE Alu 1 134 -178 1965 162 3 0 chr1 12281499 12281796 -230382557 + AluJb SINE Alu 1 298 -14 2008 125 0 34 chr1 12281796 12281961 -230382392 + AluJo SINE Alu 134 286 -26 1296 183 88 45 chr1 12281961 12282189 -230382164 + MER96B DNA MER1_type 162 416 -1 326 282 141 81 chr1 12282189 12282402 -230381951 + L2 LINE L2 2950 3188 -84 237 222 0 0 chr1 12282584 12282647 -230381706 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 254 289 139 36 chr1 12282667 12282833 -230381520 - L2 LINE L2 -56 3257 3075 217 213 29 52 chr1 12282833 12282969 -230381384 + (CAGGG)n Simple_repeat Simple_repeat 1 133 0 2202 130 0 0 chr1 12283058 12283358 -230380995 + AluSx SINE Alu 1 300 -12 949 117 28 16 chr1 12283358 12283611 -230380742 + GA-rich Low_complexity Low_complexity 1 257 0 3204 136 18 10 chr1 12283672 12284180 -230380173 + MER41E LTR ERV1 1 512 0 2068 150 7 7 chr1 12284441 12284748 -230379605 - AluJb SINE Alu -5 307 1 525 306 40 34 chr1 12285496 12285742 -230378611 + MER41E-int LTR ERV1 694 1627 -4012 423 292 7 7 chr1 12285741 12285878 -230378475 + MER41E-int LTR ERV1 2512 2648 -4028 * 561 293 74 30 chr1 12286024 12286417 -230377936 + MER41E-int LTR ERV1 2605 3014 -1784 2146 163 40 36 chr1 12286527 12286999 -230377354 - LTR22B LTR ERVK -18 474 1 699 322 62 35 chr1 12287226 12288003 -230376350 + MER41E-int LTR ERV1 2708 3896 -3195 648 299 26 11 chr1 12288034 12288302 -230376051 + MER41E-int LTR ERV1 6158 6429 -247 266 120 120 0 chr1 12288309 12288359 -230375994 + MADE1 DNA Mariner 25 80 0 487 205 105 54 chr1 12288359 12288598 -230375755 + MER41E-int LTR ERV1 6426 6676 0 3008 138 53 0 chr1 12288684 12289170 -230375183 + MER41E LTR ERV1 1 512 0 413 302 149 50 chr1 12289178 12289484 -230374869 - L2 LINE L2 -233 3039 2765 2295 65 41 24 chr1 12289484 12289778 -230374575 + AluY SINE Alu 1 299 -12 413 302 149 50 chr1 12289778 12289996 -230374357 - L2 LINE L2 -507 2765 2466 2372 93 0 3 chr1 12290776 12291086 -230373267 + AluSc SINE Alu 1 309 0 307 272 62 12 chr1 12291127 12291208 -230373145 - MIR SINE MIR -170 92 8 237 308 140 9 chr1 12291821 12291928 -230372425 - L2 LINE L2 -24 3248 3128 576 273 126 27 chr1 12291953 12292195 -230372158 + MIR SINE MIR 1 261 -1 264 77 0 0 chr1 12292700 12292739 -230371614 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 778 146 0 0 chr1 12292743 12292866 -230371487 - FRAM SINE Alu -17 159 37 2170 123 0 3 chr1 12293029 12293321 -230371032 + AluJb SINE Alu 11 301 -11 248 238 50 12 chr1 12293325 12293405 -230370948 - L1ME4a LINE L1 -197 5924 5842 568 246 0 16 chr1 12293665 12293791 -230370562 + MIR SINE MIR 25 148 -114 217 305 76 23 chr1 12293830 12293961 -230370392 + L2 LINE L2 3114 3251 -62 301 291 112 8 chr1 12294153 12294287 -230370066 + MIR SINE MIR 36 183 -79 561 192 0 0 chr1 12295067 12295606 -230368747 + (CA)n Simple_repeat Simple_repeat 1 539 0 207 0 0 0 chr1 12295907 12295930 -230368423 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 2481 79 0 22 chr1 12296485 12296800 -230367553 + AluY SINE Alu 1 308 -3 452 123 0 0 chr1 12296729 12296802 -230367551 + Alu SINE Alu 238 310 -1 433 196 30 68 chr1 12297201 12297334 -230367019 - L1ME4a LINE L1 -37 6084 5957 508 271 94 30 chr1 12297395 12297598 -230366755 + MIR SINE MIR 21 236 -26 1964 166 0 3 chr1 12297837 12298139 -230366214 - AluJb SINE Alu -3 309 9 1536 213 10 3 chr1 12298161 12298461 -230365892 - AluSx SINE Alu -4 308 7 290 287 0 26 chr1 12298617 12298732 -230365621 + (TGAA)n Simple_repeat Simple_repeat 1 112 0 216 222 7 37 chr1 12298742 12298877 -230365476 + (TGGA)n Simple_repeat Simple_repeat 4 134 0 1864 164 3 17 chr1 12300489 12300788 -230363565 + AluJo SINE Alu 1 295 -17 224 341 144 0 chr1 12301498 12301665 -230362688 - MIR SINE MIR -12 250 60 2285 107 10 0 chr1 12301843 12302142 -230362211 + AluSx SINE Alu 1 302 -10 1845 146 3 33 chr1 12302997 12303298 -230361055 + AluJb SINE Alu 1 292 -20 715 325 44 14 chr1 12303467 12303762 -230360591 + L1ME2 LINE L1 5850 6153 -11 1596 91 10 0 chr1 12303762 12303991 -230360362 - AluSg/x SINE Alu 0 313 83 1751 110 0 9 chr1 12353991 12354252 -230310101 + AluSc SINE Alu 59 309 0 858 164 48 36 chr1 12354252 12354417 -230309936 + AluSg/x SINE Alu 134 300 -12 2245 114 3 0 chr1 12354427 12354735 -230309618 - AluSq SINE Alu -4 309 1 26 0 0 0 chr1 12354740 12354766 -230309587 + AT_rich Low_complexity Low_complexity 1 26 0 248 222 0 69 chr1 12354821 12354893 -230309460 + L2 LINE L2 3246 3312 -1 639 315 56 80 chr1 12355242 12355674 -230308679 - L1ME4a LINE L1 -224 5897 5477 1203 185 101 47 chr1 12355674 12355950 -230308403 + AluJo SINE Alu 3 293 -19 639 315 56 80 chr1 12355950 12356031 -230308322 - L1ME4a LINE L1 -644 5477 5396 361 0 41 0 chr1 12356595 12356644 -230307709 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1672 183 29 13 chr1 12356647 12356953 -230307400 - AluJo SINE Alu -1 311 1 426 284 50 28 chr1 12357585 12357726 -230306627 - L2 LINE L2 0 3272 3129 433 309 45 113 chr1 12357729 12358111 -230306242 - L2 LINE L2 -3 3269 2914 394 256 51 8 chr1 12358902 12359019 -230305334 + MIR SINE MIR 24 145 -117 500 267 47 17 chr1 12359231 12359403 -230304950 - MIR SINE MIR -70 192 16 475 201 113 96 chr1 12360205 12360249 -230304104 - MLT1H1 LTR MaLR -21 534 492 1718 162 36 16 chr1 12360249 12360552 -230303801 + AluJo SINE Alu 3 311 -1 475 201 113 96 chr1 12360552 12360736 -230303617 - MLT1H1 LTR MaLR -63 492 302 241 217 140 25 chr1 12360818 12360975 -230303378 - MLT1H1 LTR MaLR -249 300 126 306 0 0 0 chr1 12361081 12361115 -230303238 + (CA)n Simple_repeat Simple_repeat 2 35 0 279 276 106 57 chr1 12361223 12361234 -230303119 - MIR SINE MIR 0 262 253 1739 148 36 18 chr1 12361234 12361538 -230302815 + AluJb SINE Alu 1 309 0 279 276 106 57 chr1 12361538 12361648 -230302705 - MIR SINE MIR -9 253 134 283 289 67 40 chr1 12361671 12361820 -230302533 - MLT1J2 LTR MaLR -26 424 272 1112 251 30 8 chr1 12361924 12362191 -230302162 + LTR33 LTR ERVL 7 279 -242 227 308 22 0 chr1 12362229 12362320 -230302033 + LTR33 LTR ERVL 389 481 -40 2102 254 152 21 chr1 12362368 12362951 -230301402 - L2 LINE L2 -654 2660 1958 2360 102 0 0 chr1 12362951 12363254 -230301099 + AluY SINE Alu 1 303 -8 2102 254 152 21 chr1 12363254 12363414 -230300939 - L2 LINE L2 -1356 1958 1820 619 374 20 6 chr1 12363414 12363756 -230300597 + L1MC4a LINE L1 761 1107 -6015 611 224 59 44 chr1 12363846 12364203 -230300150 + L1MC4a LINE L1 1297 1533 -4890 675 145 111 8 chr1 12364231 12364348 -230300005 - FLAM_C SINE Alu -14 129 1 2136 273 78 22 chr1 12364348 12365001 -230299352 + L1MC4a LINE L1 1732 2347 -4775 1927 149 0 4 chr1 12365001 12365282 -230299071 + AluJb SINE Alu 1 280 -32 234 0 0 0 chr1 12365284 12365310 -230299043 + (CA)n Simple_repeat Simple_repeat 2 27 0 2136 273 78 22 chr1 12365310 12365346 -230299007 + L1MC4a LINE L1 2347 2380 -4742 2612 63 0 0 chr1 12365346 12365648 -230298705 + AluY SINE Alu 1 302 -9 2136 273 78 22 chr1 12365648 12365739 -230298614 + L1MC4a LINE L1 2380 2464 -4658 2453 100 0 0 chr1 12365739 12366048 -230298305 + AluSx SINE Alu 1 309 -3 2136 273 78 22 chr1 12366048 12366320 -230298033 + L1MC4a LINE L1 2464 2849 -4273 786 237 5 11 chr1 12366327 12366513 -230297840 + L1MC1 LINE L1 6149 6333 0 * 807 235 121 18 chr1 12366512 12366971 -230297382 + L1MC4a LINE L1 2826 3284 -3657 1845 174 0 0 chr1 12366971 12367252 -230297101 + AluJb SINE Alu 1 281 -31 2093 152 40 45 chr1 12367252 12367800 -230296553 + MLT2A2 LTR ERVL 2 554 0 390 288 14 14 chr1 12367817 12367963 -230296390 + L1MC4a LINE L1 3270 3415 -3526 391 264 62 115 chr1 12367963 12368034 -230296319 - L2 LINE L2 -1484 1830 1757 2189 125 3 3 chr1 12368034 12368346 -230296007 + AluSx SINE Alu 1 312 0 391 264 62 115 chr1 12368346 12368596 -230295757 - L2 LINE L2 -1557 1757 1526 21 36 0 0 chr1 12368839 12368867 -230295486 + AT_rich Low_complexity Low_complexity 1 28 0 1109 257 115 35 chr1 12368927 12368946 -230295407 + L1MC4a LINE L1 6107 6123 -2480 2201 111 3 10 chr1 12368946 12369252 -230295101 + AluSx SINE Alu 1 304 -8 1109 257 115 35 chr1 12369252 12369719 -230294634 + L1MC4a LINE L1 6123 6632 -1971 486 98 0 12 chr1 12369723 12369805 -230294548 + HY3 scRNA scRNA 21 101 0 315 164 164 0 chr1 12369810 12369877 -230294476 + L1MC4a LINE L1 6606 6683 -1920 2321 105 6 19 chr1 12369916 12370230 -230294123 + AluSx SINE Alu 1 310 -2 312 321 79 0 chr1 12370264 12370404 -230293949 - L2 LINE L2 -1501 1813 1663 2191 99 0 51 chr1 12371105 12371418 -230292935 - AluSg SINE Alu -12 298 2 847 239 52 15 chr1 12372630 12372898 -230291455 + MER33 DNA MER1_type 1 278 -46 2348 94 0 0 chr1 12372902 12373227 -230291126 - AluSg SINE Alu 0 325 1 1704 154 27 27 chr1 12373229 12373528 -230290825 - AluJo SINE Alu -13 299 1 491 157 11 0 chr1 12373560 12373649 -230290704 - AluSx SINE Alu -7 302 213 1034 123 0 39 chr1 12373649 12373803 -230290550 - AluSx SINE Alu -143 169 22 354 288 27 0 chr1 12373842 12373953 -230290400 + MLT2E LTR ERVL 20 133 -495 1343 123 0 0 chr1 12374859 12375066 -230289287 + AluSg/x SINE Alu 106 312 0 2413 83 3 0 chr1 12375188 12375488 -230288865 - AluY SINE Alu -10 301 1 362 224 43 9 chr1 12375652 12375768 -230288585 - L1ME2 LINE L1 -279 5885 5766 * 944 258 70 21 chr1 12375766 12376095 -230288258 - L1ME2 LINE L1 -2505 3641 3297 411 234 53 35 chr1 12376126 12376297 -230288056 + HAL1 LINE L1 2224 2397 -110 2496 71 3 0 chr1 12376711 12377005 -230287348 + AluSp SINE Alu 2 296 -17 2349 104 0 0 chr1 12377178 12377486 -230286867 - AluSx SINE Alu -4 308 1 2043 184 105 77 chr1 12377676 12377760 -230286593 - MER97a DNA MER1_type? -208 686 606 2222 95 7 20 chr1 12377760 12378056 -230286297 - AluSx SINE Alu -20 292 1 2043 184 105 77 chr1 12378056 12378096 -230286257 - MER97a DNA MER1_type? -288 606 569 2140 132 6 10 chr1 12378096 12378407 -230285946 + AluSq SINE Alu 1 310 -3 2043 184 105 77 chr1 12378407 12378948 -230285405 - MER97a DNA MER1_type? -325 569 1 384 304 184 22 chr1 12378975 12379161 -230285192 + L2 LINE L2 1790 1945 -1369 2447 68 0 10 chr1 12379161 12379457 -230284896 - AluY SINE Alu -18 293 1 384 304 184 22 chr1 12379457 12379635 -230284718 + L2 LINE L2 1945 2213 -1101 304 313 224 33 chr1 12379639 12379679 -230284674 + L2 LINE L2 2430 2461 -853 1632 175 6 46 chr1 12379679 12380004 -230284349 - AluJb SINE Alu 0 312 1 304 313 224 33 chr1 12380004 12380423 -230283930 + L2 LINE L2 2461 2977 -337 272 289 29 10 chr1 12380483 12380587 -230283766 + L2 LINE L2 3184 3289 -24 1268 278 100 68 chr1 12381452 12381484 -230282869 + L1M4 LINE L1 2678 2708 -3438 2290 98 0 7 chr1 12381484 12381781 -230282572 - AluSg SINE Alu -15 295 1 1268 278 100 68 chr1 12381781 12381837 -230282516 + L1M4 LINE L1 2708 2761 -3385 1847 130 55 3 chr1 12381837 12382130 -230282223 - AluJb SINE Alu -4 308 1 1268 278 100 68 chr1 12382130 12382224 -230282129 + L1M4 LINE L1 2761 2851 -3295 2047 100 21 7 chr1 12382224 12382503 -230281850 + AluSx SINE Alu 1 283 -29 387 0 0 0 chr1 12382504 12382547 -230281806 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1268 278 100 68 chr1 12382547 12383177 -230281176 + L1M4 LINE L1 2851 3459 -2687 2088 116 3 20 chr1 12383177 12383479 -230280874 + AluSx SINE Alu 3 299 -13 1268 278 100 68 chr1 12383479 12383492 -230280861 + L1M4 LINE L1 3459 3470 -2676 1726 161 4 7 chr1 12383492 12383772 -230280581 + AluJo SINE Alu 14 292 -20 2455 76 0 13 chr1 12383772 12384075 -230280278 + AluY SINE Alu 1 300 -11 2459 62 0 0 chr1 12384079 12384368 -230279985 + AluY SINE Alu 1 289 -22 1268 278 100 68 chr1 12384368 12384527 -230279826 + L1M4 LINE L1 3472 3677 -2469 1895 155 0 34 chr1 12384527 12384849 -230279504 + AluJo SINE Alu 1 311 -1 263 213 41 127 chr1 12384884 12385128 -230279225 + L1M4 LINE L1 3741 3963 -2183 359 344 93 49 chr1 12385342 12385749 -230278604 + L1MC4a LINE L1 5674 6098 -1710 1387 167 80 12 chr1 12385781 12386032 -230278321 - AluJo SINE Alu -22 290 23 932 292 135 15 chr1 12386725 12387126 -230277227 + L2 LINE L2 1120 1568 -1746 777 278 93 4 chr1 12387134 12387393 -230276960 + L2 LINE L2 1801 2082 -1232 1194 84 12 24 chr1 12387393 12387592 -230276761 - AluSq SINE Alu 0 314 118 955 103 0 0 chr1 12387694 12387810 -230276543 - AluY SINE Alu -195 116 1 294 50 0 0 chr1 12389589 12389629 -230274724 + (CA)n Simple_repeat Simple_repeat 1 40 0 25 0 0 0 chr1 12389795 12389820 -230274533 + AT_rich Low_complexity Low_complexity 1 25 0 188 224 138 0 chr1 12391414 12391435 -230272918 - MER5B DNA MER1_type -97 81 64 1922 84 78 35 chr1 12391435 12391719 -230272634 - AluSg SINE Alu -14 296 1 188 224 138 0 chr1 12391719 12391755 -230272598 - MER5B DNA MER1_type -114 64 16 243 343 27 0 chr1 12392345 12392418 -230271935 + MIR SINE MIR 31 105 -157 191 230 100 80 chr1 12392751 12392851 -230271502 - MIR SINE MIR -79 183 82 299 326 133 6 chr1 12393754 12393935 -230270418 - L3 LINE CR1 -124 1453 1250 27 49 0 0 chr1 12395959 12396000 -230268353 + AT_rich Low_complexity Low_complexity 1 41 0 909 127 0 15 chr1 12396659 12396793 -230267560 + FLAM_C SINE Alu 1 132 -1 257 380 86 16 chr1 12397710 12397965 -230266388 + L2 LINE L2 2381 2653 -661 333 311 136 80 chr1 12398124 12398513 -230265840 + L2 LINE L2 2848 3258 -14 1590 140 38 0 chr1 12399084 12399320 -230265033 - AluJb SINE Alu -25 287 43 661 111 10 0 chr1 12399322 12399421 -230264932 + FLAM_C SINE Alu 33 132 -11 24 0 0 0 chr1 12399937 12399961 -230264392 + AT_rich Low_complexity Low_complexity 1 24 0 382 318 0 0 chr1 12400846 12400956 -230263397 - L2 LINE L2 -17 3296 3187 1502 211 48 15 chr1 12401188 12401525 -230262828 + MLT1A2 LTR MaLR 23 370 -4 427 321 64 21 chr1 12402821 12403008 -230261345 + MIR SINE MIR 49 243 -19 331 238 138 92 chr1 12404500 12404685 -230259668 + L2 LINE L2 2512 2712 -602 2318 71 3 32 chr1 12404685 12404993 -230259360 + AluY SINE Alu 1 299 -12 331 238 138 92 chr1 12404993 12405047 -230259306 + L2 LINE L2 2712 2762 -552 239 305 76 29 chr1 12405061 12405166 -230259187 + L2 LINE L2 3172 3281 -32 2405 64 20 3 chr1 12406641 12406936 -230257417 - AluY SINE Alu -11 300 1 23 0 0 0 chr1 12406941 12406964 -230257389 + AT_rich Low_complexity Low_complexity 1 23 0 807 269 100 23 chr1 12407294 12407643 -230256710 - L1ME3A LINE L1 -310 5860 5485 562 180 11 0 chr1 12407650 12407739 -230256614 + Charlie5 DNA MER1_type 3 92 -2520 24 32 0 0 chr1 12407871 12407902 -230256451 + AT_rich Low_complexity Low_complexity 1 31 0 1031 226 68 16 chr1 12410172 12410420 -230253933 + MIR SINE MIR 2 262 0 198 0 0 0 chr1 12411450 12411472 -230252881 + (T)n Simple_repeat Simple_repeat 1 22 0 414 214 0 0 chr1 12411472 12411542 -230252811 - AluJ/FLAM SINE Alu -241 71 2 418 288 124 17 chr1 12411661 12411894 -230252459 + MIR SINE MIR 1 258 -4 2429 81 0 10 chr1 12412507 12412814 -230251539 - AluSg SINE Alu -6 304 1 190 310 11 35 chr1 12413199 12413286 -230251067 + L2 LINE L2 3205 3289 -24 214 316 0 0 chr1 12415138 12415195 -230249158 + (CA)n Simple_repeat Simple_repeat 2 58 0 2469 72 3 0 chr1 12416120 12416424 -230247929 - AluSg SINE Alu -5 305 1 304 221 80 63 chr1 12416662 12416865 -230247488 + L1ME4a LINE L1 5295 5493 -671 759 260 130 25 chr1 12416935 12417250 -230247103 + L1ME4a LINE L1 5485 5832 -289 351 105 0 63 chr1 12417326 12417421 -230246932 + (TA)n Simple_repeat Simple_repeat 2 90 0 289 217 87 0 chr1 12417498 12417590 -230246763 + MIR SINE MIR 124 223 -39 700 271 6 0 chr1 12420463 12420644 -230243709 + MIR SINE MIR 8 189 -73 186 71 0 0 chr1 12424225 12424253 -230240100 + (T)n Simple_repeat Simple_repeat 1 28 0 249 367 23 16 chr1 12424823 12424951 -230239402 - MIR SINE MIR -59 149 21 296 286 115 36 chr1 12426493 12426685 -230237668 - MIR SINE MIR -9 253 47 463 272 174 53 chr1 12427436 12427815 -230236538 + HAL1 LINE L1 1 425 -2082 611 236 67 45 chr1 12427847 12428025 -230236328 + HAL1 LINE L1 742 923 -1584 527 250 28 68 chr1 12428283 12428531 -230235822 + HAL1 LINE L1 1984 2221 -286 439 218 55 74 chr1 12428555 12428757 -230235596 + HAL1 LINE L1 2304 2501 -6 2151 135 3 0 chr1 12428825 12429122 -230235231 - AluSx SINE Alu -14 298 1 862 174 26 0 chr1 12430668 12430823 -230233530 - Charlie1b DNA MER1_type -243 280 122 2209 123 0 7 chr1 12431083 12431391 -230232962 - AluJb SINE Alu -6 306 1 2213 124 0 0 chr1 12432672 12432971 -230231382 + AluSg SINE Alu 1 299 -11 2568 54 0 0 chr1 12433993 12434287 -230230066 - AluSc SINE Alu -15 294 1 262 271 27 75 chr1 12436249 12436386 -230227967 - MIR SINE MIR -62 146 16 1561 153 29 32 chr1 12436391 12436672 -230227681 - AluJo SINE Alu -32 280 1 332 234 204 50 chr1 12437540 12437717 -230226636 + MIR SINE MIR 37 237 -25 327 288 12 53 chr1 12437717 12437887 -230226466 + L2 LINE L2 2919 3081 -191 219 129 35 35 chr1 12439463 12439548 -230224805 + (TA)n Simple_repeat Simple_repeat 2 86 0 189 0 0 0 chr1 12440172 12440193 -230224160 + (A)n Simple_repeat Simple_repeat 1 21 0 2479 81 7 0 chr1 12440365 12440672 -230223681 + AluSc SINE Alu 1 309 0 1007 174 6 6 chr1 12440705 12440877 -230223476 + MER2 DNA MER2_type 2 173 -172 282 245 0 0 chr1 12440967 12441020 -230223333 + MER2 DNA MER2_type 268 320 -25 736 239 6 0 chr1 12441561 12441720 -230222633 - FRAM SINE Alu -6 160 1 2294 120 3 0 chr1 12443476 12443785 -230220568 - AluSx SINE Alu -2 310 1 1058 104 0 0 chr1 12443785 12443919 -230220434 - AluSg SINE Alu -176 134 1 258 194 0 14 chr1 12444200 12444243 -230220110 + (TTAAA)n Simple_repeat Simple_repeat 1 44 -27 1920 130 0 0 chr1 12444243 12444504 -230219849 - AluSx SINE Alu -51 261 1 258 194 0 14 chr1 12444504 12444532 -230219821 + (TTAAA)n Simple_repeat Simple_repeat 44 71 0 198 209 93 0 chr1 12444889 12444932 -230219421 - L2 LINE L2 -1 3271 3225 192 315 139 18 chr1 12445856 12446021 -230218332 + MIR SINE MIR 1 185 -77 279 284 0 0 chr1 12446234 12446301 -230218052 + MIR3 SINE MIR 131 197 -11 596 266 85 5 chr1 12448090 12448289 -230216064 + MIR SINE MIR 47 261 -1 1839 198 100 5 chr1 12449325 12449704 -230214649 - MER47B DNA MER2_type 0 418 4 222 348 11 11 chr1 12449887 12449979 -230214374 + MIR SINE MIR 50 141 -121 1918 138 7 3 chr1 12450008 12450298 -230214055 - AluSx SINE Alu -21 291 1 239 325 63 32 chr1 12451909 12452035 -230212318 + MIR SINE MIR 19 148 -60 452 210 34 67 chr1 12452676 12452795 -230211558 - MIR SINE MIR -21 241 127 2260 111 0 7 chr1 12453700 12454006 -230210347 - AluSg SINE Alu -6 304 1 831 261 162 29 chr1 12455487 12456000 -230208353 + L1MEc LINE L1 1083 1703 -4693 2120 119 23 0 chr1 12456000 12456302 -230208051 + AluSx SINE Alu 1 309 -3 831 261 162 29 chr1 12456302 12456443 -230207910 + L1MEc LINE L1 1703 1824 -4572 937 232 70 11 chr1 12456674 12456946 -230207407 + L1ME3A LINE L1 5664 5951 -219 1957 145 30 10 chr1 12457252 12457555 -230206798 + AluJb SINE Alu 1 309 -3 483 177 199 40 chr1 12457738 12457964 -230206389 + MER33 DNA MER1_type 4 265 -59 303 309 32 48 chr1 12458092 12458218 -230206135 + L1MEc LINE L1 1858 1981 -4415 184 246 108 0 chr1 12458772 12458837 -230205516 + L2 LINE L2 3230 3301 -12 2159 127 0 3 chr1 12458914 12459214 -230205139 + AluSq SINE Alu 1 299 -14 2140 135 0 6 chr1 12459235 12459547 -230204806 - AluSx SINE Alu -2 310 1 375 239 123 68 chr1 12460207 12460370 -230203983 + MIR SINE MIR 1 172 -90 201 138 0 0 chr1 12460377 12460406 -230203947 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 751 246 116 104 chr1 12460407 12460513 -230203840 - L2 LINE L2 -10 3303 3200 266 100 100 0 chr1 12460513 12460553 -230203800 + MLT1A2 LTR MaLR 1 44 -330 751 246 116 104 chr1 12460553 12461274 -230203079 - L2 LINE L2 -113 3200 2417 1703 141 121 47 chr1 12461639 12461979 -230202374 - MLT1A1 LTR MaLR 0 365 1 2479 72 3 0 chr1 12463173 12463480 -230200873 + AluSp SINE Alu 1 308 -5 283 264 73 0 chr1 12463980 12464090 -230200263 + L2 LINE L2 3183 3300 -13 762 254 143 5 chr1 12464451 12464660 -230199693 + MIR SINE MIR 18 255 -7 1371 192 15 23 chr1 12464663 12464929 -230199424 - AluJb SINE Alu -13 299 36 189 0 0 0 chr1 12466153 12466170 -230198183 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chr1 12466170 12466191 -230198162 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 264 30 0 0 chr1 12466190 12466223 -230198130 + (TC)n Simple_repeat Simple_repeat 1 33 0 186 71 0 0 chr1 12466854 12466882 -230197471 + (T)n Simple_repeat Simple_repeat 1 28 0 1687 162 46 0 chr1 12467247 12467531 -230196822 + AluJb SINE Alu 2 298 -14 2329 96 3 3 chr1 12467726 12468029 -230196324 - AluSp SINE Alu -10 303 1 303 338 65 14 chr1 12468424 12468563 -230195790 - L2 LINE L2 -5 3267 3122 354 299 143 20 chr1 12468691 12468838 -230195515 + MIR3 SINE MIR 38 202 -6 310 288 47 65 chr1 12469513 12469683 -230194670 + MIR SINE MIR 46 212 -50 382 275 48 48 chr1 12469721 12469888 -230194465 + MIR SINE MIR 23 189 -73 186 239 43 0 chr1 12470357 12470403 -230193950 - L2 LINE L2 -19 3253 3206 2175 126 3 0 chr1 12470549 12470850 -230193503 + AluSq SINE Alu 1 302 -11 1990 176 20 12 chr1 12472378 12472719 -230191634 + MER2 DNA MER2_type 1 344 0 323 277 35 51 chr1 12472736 12472859 -230191494 + MIR SINE MIR 33 152 -101 467 33 16 0 chr1 12472859 12472920 -230191433 + (TAA)n Simple_repeat Simple_repeat 1 62 0 323 277 35 51 chr1 12472920 12472957 -230191396 + MIR SINE MIR 152 188 -65 2145 106 11 0 chr1 12473102 12473409 -230190944 - AluSq SINE Alu 0 310 1 191 179 0 0 chr1 12474368 12474407 -230189946 + MIR SINE MIR 112 150 -112 312 137 0 0 chr1 12474407 12474458 -230189895 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 2142 123 0 17 chr1 12474566 12474868 -230189485 - AluSx SINE Alu -15 297 1 384 253 47 47 chr1 12476863 12477013 -230187340 + MIR SINE MIR 59 208 -54 392 222 101 0 chr1 12477308 12477407 -230186946 + MIR SINE MIR 37 145 -117 1959 112 14 34 chr1 12478015 12478310 -230186043 + AluSx SINE Alu 1 289 -23 1255 169 257 7 chr1 12480089 12480361 -230183992 + MER7A DNA MER2_type 1 338 -8 2638 143 57 0 chr1 12480361 12480766 -230183587 + MSTA LTR MaLR 1 428 0 232 254 127 0 chr1 12481488 12481551 -230182802 - MIR SINE MIR -67 195 125 22 0 0 0 chr1 12481670 12481692 -230182661 + AT_rich Low_complexity Low_complexity 1 22 0 2095 132 3 7 chr1 12481938 12482248 -230182105 + AluSx SINE Alu 3 311 -1 233 332 155 26 chr1 12482917 12483110 -230181243 - L2 LINE L2 -533 2781 2564 1596 167 24 24 chr1 12483952 12484245 -230180108 - AluJb SINE Alu -19 293 1 1925 241 28 79 chr1 12485405 12485924 -230178429 - L1ME3A LINE L1 -1 6964 6491 1756 165 0 0 chr1 12485924 12486203 -230178150 - AluJb SINE Alu -33 279 1 1925 241 28 79 chr1 12486203 12486401 -230177952 - L1ME3A LINE L1 -474 6491 6284 823 161 0 0 chr1 12486433 12486557 -230177796 + FLAM_C SINE Alu 1 124 -19 424 309 21 38 chr1 12486739 12486975 -230177378 + AluJo SINE Alu 52 283 -29 1075 178 102 22 chr1 12487007 12487232 -230177121 - AluJb SINE Alu -45 267 25 206 125 21 0 chr1 12487253 12487301 -230177052 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2900 263 46 17 chr1 12487356 12488380 -230175973 - L1ME3A LINE L1 -708 6257 5206 1384 279 37 23 chr1 12488381 12488881 -230175472 + MLT1H LTR MaLR 1 549 0 300 176 0 44 chr1 12488898 12488989 -230175364 + CT-rich Low_complexity Low_complexity 2 88 0 911 115 0 0 chr1 12488990 12489112 -230175241 - FLAM_C SINE Alu -19 124 3 1505 263 60 45 chr1 12489115 12489810 -230174543 - L1ME3A LINE L1 -1769 5172 4467 333 268 137 0 chr1 12489848 12490001 -230174352 - L1ME3A LINE L1 -4971 1452 1279 479 63 16 0 chr1 12491213 12491276 -230173077 + U3 snRNA snRNA 1 64 -153 326 262 87 0 chr1 12491451 12491554 -230172799 + L1M LINE L1 5269 5380 -2428 1957 133 14 4 chr1 12491800 12492078 -230172275 + AluJb SINE Alu 1 281 -31 195 42 0 0 chr1 12492123 12492147 -230172206 + (TC)n Simple_repeat Simple_repeat 2 25 0 192 343 0 61 chr1 12492376 12492475 -230171878 - MIR SINE MIR -110 152 60 1102 252 26 38 chr1 12495059 12495400 -230168953 + MER102b DNA MER1_type 2 338 -3 311 266 13 0 chr1 12495558 12495637 -230168716 + L3 LINE CR1 1309 1388 -189 288 284 0 15 chr1 12495788 12495855 -230168498 + MIR SINE MIR 3 68 -194 360 0 0 0 chr1 12499459 12499499 -230164854 + (TG)n Simple_repeat Simple_repeat 1 40 0 1644 168 11 15 chr1 12499515 12499789 -230164564 - AluJb SINE Alu -39 273 1 808 116 75 7 chr1 12500489 12500636 -230163717 + L1MA8 LINE L1 6120 6276 -15 2160 115 10 0 chr1 12500627 12500922 -230163431 - AluSp SINE Alu -15 298 1 282 277 0 0 chr1 12501117 12501182 -230163171 + L2 LINE L2 3208 3272 0 2107 102 3 3 chr1 12501479 12501792 -230162561 + AluSx SINE Alu 1 313 0 1200 237 6 44 chr1 12502279 12502596 -230161757 + L1M4 LINE L1 68 372 -6170 339 206 54 0 chr1 12502590 12502682 -230161671 - L1MEc LINE L1 -2845 3370 3274 * 315 0 0 0 chr1 12502683 12502718 -230161635 + (TA)n Simple_repeat Simple_repeat 1 35 0 325 24 0 24 chr1 12502719 12502761 -230161592 + MLT2A2 LTR ERVL 413 453 0 27294 62 11 7 chr1 12502761 12506151 -230158202 + HERVL-A2 LTR ERVL 1 3404 -2250 28 48 0 0 chr1 12506151 12506193 -230158160 + AT_rich Low_complexity Low_complexity 1 42 0 1879 122 54 0 chr1 12506222 12506501 -230157852 - AluSq SINE Alu -19 294 1 1561 196 0 22 chr1 12506549 12506861 -230157492 + AluSx SINE Alu 1 305 -7 750 190 0 8 chr1 12507010 12507131 -230157222 + AluSx SINE Alu 44 163 -149 17723 62 9 8 chr1 12507133 12509328 -230155025 + HERVL-A1 LTR ERVL 3388 5585 -69 3051 59 83 5 chr1 12509353 12509760 -230154593 + MLT2A1 LTR ERVL 1 439 -5 2016 191 81 8 chr1 12509769 12510102 -230154251 - L1MEc LINE L1 -3913 2483 2097 2133 117 6 19 chr1 12510102 12510418 -230153935 - AluSx SINE Alu 0 312 1 2016 191 81 8 chr1 12510418 12510601 -230153752 - L1MEc LINE L1 -4299 2097 1929 576 234 38 19 chr1 12510618 12510776 -230153577 - L1MEc LINE L1 -4553 1843 1683 410 309 57 0 chr1 12510777 12510952 -230153401 - L1MEc LINE L1 -4825 1390 1206 391 257 241 0 chr1 12510966 12511153 -230153200 - L1MEc LINE L1 -5307 1089 858 3162 238 74 9 chr1 12511157 12512035 -230152318 - L1MEc LINE L1 -5426 970 36 204 250 60 50 chr1 12512053 12512153 -230152200 - L3b LINE CR1 -209 1374 1274 1523 175 11 11 chr1 12513791 12514065 -230150288 + AluJo SINE Alu 1 274 -38 216 0 0 0 chr1 12514070 12514094 -230150259 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1025 274 92 48 chr1 12514198 12514786 -230149567 + L2 LINE L2 2243 2856 -458 522 217 50 56 chr1 12514831 12515011 -230149342 + L2 LINE L2 3130 3308 -5 300 200 100 0 chr1 12515384 12515444 -230148909 - MIR SINE MIR -74 188 123 2190 116 10 0 chr1 12516310 12516612 -230147741 + AluSq SINE Alu 1 305 -8 1027 76 29 12 chr1 12516616 12516788 -230147565 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 198 103 0 0 chr1 12516788 12516817 -230147536 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 2990 102 27 0 chr1 12516830 12517240 -230147113 - MER57B LTR ERV1 -13 421 1 2525 54 0 3 chr1 12518647 12518944 -230145409 + AluY SINE Alu 1 296 -15 229 305 9 0 chr1 12519650 12519723 -230144630 - MIR SINE MIR -57 151 76 186 43 0 0 chr1 12520871 12520894 -230143459 + (T)n Simple_repeat Simple_repeat 1 23 0 688 286 48 52 chr1 12521145 12521213 -230143140 - MIR SINE MIR -10 252 185 2544 80 0 0 chr1 12521213 12521526 -230142827 + AluSq SINE Alu 1 313 0 688 286 48 52 chr1 12521526 12521709 -230142644 - MIR SINE MIR -77 185 2 811 210 96 18 chr1 12521910 12522129 -230142224 + MIR SINE MIR 23 258 -4 231 311 235 0 chr1 12522155 12522287 -230142066 - MIR SINE MIR -51 211 49 1787 232 61 37 chr1 12523043 12523535 -230140818 + L1MC4 LINE L1 6505 7008 -1034 2272 105 0 0 chr1 12523537 12523832 -230140521 + AluSx SINE Alu 1 295 -17 606 234 12 42 chr1 12523943 12524110 -230140243 + L1MC4a LINE L1 7168 7329 -479 263 161 0 18 chr1 12524118 12524174 -230140179 + L1MC4 LINE L1 7988 8042 0 4279 156 37 71 chr1 12524499 12524902 -230139451 + L1MB5 LINE L1 5098 5513 -661 1400 188 24 40 chr1 12524902 12525200 -230139153 + AluJb SINE Alu 1 293 -19 4279 156 37 71 chr1 12525200 12525572 -230138781 + L1MB5 LINE L1 5513 5827 -347 2331 92 0 7 chr1 12525572 12525877 -230138476 + AluSq SINE Alu 1 303 -10 4279 156 37 71 chr1 12525877 12526206 -230138147 + L1MB5 LINE L1 5827 6165 -9 306 106 0 0 chr1 12528010 12528057 -230136296 + (CA)n Simple_repeat Simple_repeat 2 48 0 2046 129 4 0 chr1 12579133 12579411 -230084942 + AluJb SINE Alu 1 279 -33 1059 130 0 0 chr1 12579411 12579580 -230084773 + (GGGA)n Simple_repeat Simple_repeat 1 169 0 2205 107 3 16 chr1 12580557 12580867 -230083486 - AluSg SINE Alu 0 310 5 2123 85 0 0 chr1 12580885 12581145 -230083208 + AluSc SINE Alu 46 305 -4 290 302 147 0 chr1 12581187 12581303 -230083050 + L2 LINE L2 3180 3312 -1 2175 88 24 20 chr1 12581404 12581700 -230082653 + AluSx SINE Alu 1 297 -15 332 313 53 60 chr1 12582324 12582557 -230081796 + L2 LINE L2 2543 2773 -541 2173 94 20 0 chr1 12582557 12582854 -230081499 + AluSq SINE Alu 1 303 -10 332 313 53 60 chr1 12582854 12583019 -230081334 + L2 LINE L2 2773 2938 -376 1910 138 138 0 chr1 12583354 12583650 -230080703 + MER1B DNA MER1_type 1 337 0 534 302 50 30 chr1 12584000 12584118 -230080235 + MIR SINE MIR 29 154 -108 2189 46 0 4 chr1 12584118 12584377 -230079976 + AluY SINE Alu 54 311 0 534 302 50 30 chr1 12584377 12584460 -230079893 + MIR SINE MIR 154 234 -28 1695 166 0 48 chr1 12584759 12585072 -230079281 + AluJb SINE Alu 1 298 -14 1987 174 9 14 chr1 12588100 12588450 -230075903 + MER7A DNA MER2_type 1 346 0 2462 230 101 36 chr1 12588450 12589166 -230075187 + MER21B LTR ERV1 20 781 -82 204 292 31 15 chr1 12589206 12589271 -230075082 + MIR SINE MIR 197 262 0 203 205 48 108 chr1 12589530 12589613 -230074740 + MIR3 SINE MIR 120 197 -11 1102 99 0 94 chr1 12589738 12589841 -230074512 + L1PA16 LINE L1 5805 5883 -283 2163 133 0 0 chr1 12589841 12590141 -230074212 + AluSx SINE Alu 1 300 -12 1102 99 0 94 chr1 12590141 12590229 -230074124 + L1PA16 LINE L1 5883 5978 -188 362 134 45 15 chr1 12590229 12590296 -230074057 - MER21B LTR ERV1 -309 554 486 499 110 27 7 chr1 12590302 12590446 -230073907 + L1PA16 LINE L1 5985 6166 0 1474 207 71 15 chr1 12591241 12591651 -230072702 + L1M4 LINE L1 2762 3194 -2952 234 192 48 151 chr1 12591649 12591692 -230072661 + L1M4 LINE L1 2645 2691 -3455 * 2073 122 14 7 chr1 12591692 12591987 -230072366 - AluSx SINE Alu -15 297 1 234 192 48 151 chr1 12591987 12592089 -230072264 + L1M4 LINE L1 2691 2775 -3371 567 170 30 52 chr1 12592101 12592236 -230072117 + MIR SINE MIR 69 200 -62 404 284 9 9 chr1 12592517 12592633 -230071720 + L2 LINE L2 3160 3275 -38 215 211 0 19 chr1 12592664 12592716 -230071637 + MIR SINE MIR 166 216 -46 437 289 12 50 chr1 12593553 12593795 -230070558 + L1ME LINE L1 5547 5779 -342 894 275 130 17 chr1 12593958 12594435 -230069918 + L1ME3A LINE L1 5417 5947 -223 29 28 0 0 chr1 12595014 12595050 -230069303 + AT_rich Low_complexity Low_complexity 1 36 0 1972 131 10 10 chr1 12595103 12595408 -230068945 - AluJb SINE Alu -7 305 1 2638 185 74 25 chr1 12595471 12595528 -230068825 + MER119 DNA MER1_type 5 58 -525 2351 66 3 3 chr1 12595528 12595817 -230068536 - AluSc SINE Alu -20 289 1 2638 185 74 25 chr1 12595817 12596311 -230068042 + MER119 DNA MER1_type 58 583 0 322 266 93 58 chr1 12597556 12597610 -230066743 + MER5B DNA MER1_type 1 52 -126 2091 139 7 3 chr1 12597610 12597913 -230066440 + AluSx SINE Alu 1 304 -8 322 266 93 58 chr1 12597913 12597997 -230066356 + MER5B DNA MER1_type 52 144 -34 2389 90 0 10 chr1 12598062 12598372 -230065981 - AluSq SINE Alu -6 307 1 355 288 44 44 chr1 12598512 12598672 -230065681 - MIR3 SINE MIR -9 199 40 1404 179 37 15 chr1 12598724 12598997 -230065356 - AluJo SINE Alu -28 284 6 2435 68 0 3 chr1 12599611 12599907 -230064446 - AluY SINE Alu -15 296 2 1845 131 67 3 chr1 12600395 12600677 -230063676 - AluJb SINE Alu -12 300 1 824 158 0 0 chr1 12600966 12601086 -230063267 + FLAM_C SINE Alu 1 120 -23 30 27 0 0 chr1 12601087 12601124 -230063229 + AT_rich Low_complexity Low_complexity 1 37 0 1974 163 0 0 chr1 12601207 12601508 -230062845 + AluSx SINE Alu 1 301 -11 545 214 0 46 chr1 12601590 12601721 -230062632 - MER94 DNA DNA -9 125 1 261 222 12 86 chr1 12601808 12601889 -230062464 + MER5A DNA MER1_type 113 187 -2 246 200 0 0 chr1 12602909 12602959 -230061394 + L2 LINE L2 3262 3311 -2 2019 159 0 0 chr1 12603188 12603497 -230060856 + AluSx SINE Alu 1 309 -3 434 235 104 52 chr1 12603710 12603961 -230060392 + L1MC5 LINE L1 7314 7577 -384 2026 132 0 0 chr1 12603971 12604251 -230060102 + AluSx SINE Alu 1 280 -32 1029 86 25 0 chr1 12604257 12604419 -230059934 + (GGAAA)n Simple_repeat Simple_repeat 4 169 0 404 247 132 37 chr1 12604593 12604765 -230059588 + L1MC5 LINE L1 7603 7757 -204 2170 98 4 0 chr1 12604765 12605088 -230059265 + AluSx SINE Alu 7 330 0 404 247 132 37 chr1 12605088 12605210 -230059143 + L1MC5 LINE L1 7757 7926 -35 567 283 118 34 chr1 12605944 12606181 -230058172 - MIR SINE MIR 0 262 6 190 216 0 0 chr1 12606322 12606359 -230057994 - MIR SINE MIR -73 135 99 1966 141 3 3 chr1 12608161 12608459 -230055894 + AluJb SINE Alu 1 298 -14 347 179 28 47 chr1 12608476 12608582 -230055771 + L1MC5 LINE L1 7094 7197 -764 990 237 86 87 chr1 12608636 12609372 -230054981 + L1MC5 LINE L1 7246 7900 -61 44 63 0 0 chr1 12609396 12609475 -230054878 + AT_rich Low_complexity Low_complexity 1 79 0 1915 128 45 3 chr1 12609560 12609848 -230054505 + AluSx SINE Alu 1 300 -12 2358 97 0 13 chr1 12611776 12612087 -230052266 + AluSq SINE Alu 3 309 -4 237 305 8 85 chr1 12614887 12614923 -230049430 + L2 LINE L2 3122 3159 -113 1948 118 0 73 chr1 12614923 12615101 -230049252 - AluSx SINE Alu -19 293 146 2296 119 0 0 chr1 12615101 12615412 -230048941 - AluSx SINE Alu -1 311 1 1948 118 0 73 chr1 12615412 12615548 -230048805 - AluSx SINE Alu -166 146 2 237 305 8 85 chr1 12615548 12615629 -230048724 + L2 LINE L2 3159 3230 -42 1271 204 115 4 chr1 12615737 12616007 -230048346 + AluJo SINE Alu 1 300 -2 2234 107 3 0 chr1 12616009 12616307 -230048046 + AluSx SINE Alu 1 299 -13 522 163 51 10 chr1 12616307 12616405 -230047948 + L1MB7 LINE L1 5576 5677 -507 2115 202 59 14 chr1 12616445 12616954 -230047399 + L1MB7 LINE L1 5652 6183 -1 342 0 0 0 chr1 12617918 12617956 -230046397 + (CA)n Simple_repeat Simple_repeat 2 39 0 1873 146 25 0 chr1 12618158 12618439 -230045914 - AluJo SINE Alu -24 288 1 2342 100 7 0 chr1 12618660 12618961 -230045392 - AluSx SINE Alu -8 304 2 1013 163 6 11 chr1 12619453 12619631 -230044722 + AluJb SINE Alu 121 297 -15 2225 125 20 0 chr1 12619869 12620174 -230044179 - AluSx SINE Alu -1 311 1 1957 146 3 27 chr1 12620182 12620483 -230043870 - AluJo SINE Alu -18 294 1 189 0 0 0 chr1 12622078 12622099 -230042254 + (A)n Simple_repeat Simple_repeat 1 21 0 1675 163 43 0 chr1 12622102 12622378 -230041975 + AluSx SINE Alu 4 291 -21 32 0 0 0 chr1 12622378 12622410 -230041943 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr1 12622922 12622953 -230041400 + AT_rich Low_complexity Low_complexity 1 31 0 15890 112 25 27 chr1 12623620 12624156 -230040197 - Tigger1 DNA MER2_type 0 2418 1882 1994 152 0 19 chr1 12624156 12624472 -230039881 - AluJo SINE Alu -2 310 1 15890 112 25 27 chr1 12624472 12624911 -230039442 - Tigger1 DNA MER2_type -536 1882 1444 685 187 8 0 chr1 12624911 12625034 -230039319 + FLAM_C SINE Alu 1 124 -9 15890 112 25 27 chr1 12625034 12626480 -230037873 - Tigger1 DNA MER2_type -974 1444 1 3177 207 26 20 chr1 12626840 12627283 -230037070 - MER82 DNA MER2_type -1 652 202 2458 159 14 31 chr1 12627283 12627345 -230037008 - MER47B DNA MER2_type -1908 415 353 2166 138 0 0 chr1 12627345 12627650 -230036703 + AluSx SINE Alu 1 305 -7 2458 159 14 31 chr1 12627650 12628009 -230036344 - MER47B DNA MER2_type -1970 353 1 3177 207 26 20 chr1 12628009 12628213 -230036140 - MER82 DNA MER2_type -451 202 1 702 198 33 66 chr1 12628719 12628901 -230035452 + MER3 DNA MER1_type 34 209 0 2659 58 0 0 chr1 12630024 12630333 -230034020 + AluY SINE Alu 1 309 -2 1864 148 41 0 chr1 12630745 12631035 -230033318 + AluJo SINE Alu 1 302 -10 1273 201 23 4 chr1 12631053 12631317 -230033036 + AluJb SINE Alu 42 310 -2 180 0 0 0 chr1 12633638 12633658 -230030695 + (A)n Simple_repeat Simple_repeat 1 20 0 721 163 47 23 chr1 12634167 12634296 -230030057 - FLAM_C SINE Alu -1 132 1 25 0 0 0 chr1 12634405 12634430 -230029923 + AT_rich Low_complexity Low_complexity 1 25 0 2225 117 7 0 chr1 12634430 12634737 -230029616 - AluSc SINE Alu 0 309 1 470 281 142 11 chr1 12634812 12635086 -230029267 - L1MC4a LINE L1 -1736 6072 5763 2434 90 0 0 chr1 12635104 12635405 -230028948 + AluSx SINE Alu 2 302 -10 2254 118 0 13 chr1 12635521 12635835 -230028518 + AluSx SINE Alu 1 310 -2 890 137 0 0 chr1 12636008 12636132 -230028221 + FLAM_C SINE Alu 1 124 -19 329 305 45 57 chr1 12636681 12636858 -230027495 - L2 LINE L2 -2 3270 3096 1129 147 25 15 chr1 12636971 12637169 -230027184 + MER2 DNA MER2_type 1 200 -145 2429 90 3 0 chr1 12637173 12637472 -230026881 - AluSp SINE Alu -13 300 1 229 200 0 0 chr1 12637477 12637532 -230026821 + T-rich Low_complexity Low_complexity 1 55 0 2313 125 0 0 chr1 12637548 12637859 -230026494 - AluSx SINE Alu -1 311 1 316 221 0 15 chr1 12637866 12637934 -230026419 + MER2 DNA MER2_type 279 345 0 1318 240 104 12 chr1 12638098 12638510 -230025843 + MLT1C LTR MaLR 6 455 -12 398 232 21 0 chr1 12639126 12639221 -230025132 - MER58B DNA MER1_type 0 341 245 298 229 0 0 chr1 12639245 12639306 -230025047 - MER58B DNA MER1_type -36 305 245 298 229 0 0 chr1 12639330 12639391 -230024962 - MER58B DNA MER1_type -36 305 245 562 228 184 0 chr1 12639415 12639573 -230024780 - MER58A DNA MER1_type -36 188 2 329 151 12 58 chr1 12639686 12639772 -230024581 + MIR SINE MIR 179 260 -2 793 168 74 141 chr1 12639876 12640132 -230024221 + MER21B LTR ERV1 11 249 -614 1758 214 77 3 chr1 12640200 12640579 -230023774 + MER21B LTR ERV1 431 837 -26 194 322 60 40 chr1 12640615 12640764 -230023589 - L2 LINE L2 -1032 2282 2131 * 210 250 0 0 chr1 12640761 12640805 -230023548 + MIR SINE MIR 108 151 -111 363 78 0 0 chr1 12641351 12641402 -230022951 + (TTATG)n Simple_repeat Simple_repeat 2 52 0 563 180 72 22 chr1 12641690 12641704 -230022649 + L1MB7 LINE L1 5189 5201 -945 1644 189 10 20 chr1 12641704 12642036 -230022317 + AluJo SINE Alu 1 312 0 563 180 72 22 chr1 12642036 12642160 -230022193 + L1MB7 LINE L1 5201 5334 -812 2226 81 10 19 chr1 12642160 12642470 -230021883 + AluSq SINE Alu 1 307 -6 1343 97 0 0 chr1 12642470 12642645 -230021708 + AluSg/x SINE Alu 124 298 -12 723 201 15 21 chr1 12642649 12642815 -230021538 + L1MB7 LINE L1 5325 5503 -671 231 211 0 0 chr1 12642815 12642872 -230021481 + T-rich Low_complexity Low_complexity 1 57 0 1960 99 37 15 chr1 12642919 12643191 -230021162 - AluSx SINE Alu -17 295 18 1578 180 24 0 chr1 12643205 12643500 -230020853 + L1MB7 LINE L1 5487 5788 -396 2841 187 64 33 chr1 12643500 12643785 -230020568 + MER67B LTR ERV1 1 276 -385 1413 130 39 17 chr1 12643785 12644016 -230020337 - MER46A DNA MER2_type 0 236 1 2841 187 64 33 chr1 12644016 12644371 -230019982 + MER67B LTR ERV1 276 661 0 1230 158 59 9 chr1 12644371 12644592 -230019761 + L1MB7 LINE L1 5785 6016 -168 888 167 0 61 chr1 12644592 12644772 -230019581 - FRAM SINE Alu -8 168 1 720 187 0 0 chr1 12644789 12644923 -230019430 + L1MB7 LINE L1 6038 6171 -13 382 216 23 16 chr1 12645303 12645415 -230018938 - MIR3 SINE MIR -40 168 56 675 124 0 0 chr1 12646740 12646837 -230017516 - AluJ/FLAM SINE Alu -213 99 3 837 165 0 71 chr1 12646894 12647064 -230017289 + AluJo SINE Alu 123 280 -32 192 40 0 0 chr1 12647064 12647089 -230017264 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2324 103 0 6 chr1 12647094 12647406 -230016947 + AluSx SINE Alu 1 310 -2 445 273 51 17 chr1 12647449 12647625 -230016728 - MER5A DNA MER1_type 0 189 8 567 169 305 0 chr1 12648199 12648353 -230016000 - MER58C DNA MER1_type -13 202 2 350 216 56 40 chr1 12648376 12648501 -230015852 + MER5A DNA MER1_type 26 152 -37 204 300 88 0 chr1 12648785 12648865 -230015488 - L2 LINE L2 -17 3255 3169 1991 142 0 19 chr1 12649106 12649424 -230014929 + AluJo SINE Alu 1 312 0 2481 95 0 0 chr1 12649730 12650036 -230014317 - AluSq SINE Alu -7 306 1 1905 154 10 10 chr1 12650910 12651215 -230013138 + AluJb SINE Alu 1 305 -7 1851 153 10 13 chr1 12651419 12651719 -230012634 + AluJo SINE Alu 4 302 -10 319 250 48 32 chr1 12651745 12651869 -230012484 - MIR SINE MIR -42 220 95 25 31 0 0 chr1 12651869 12651901 -230012452 + AT_rich Low_complexity Low_complexity 1 32 0 1010 159 0 0 chr1 12651904 12652055 -230012298 - FRAM SINE Alu -23 153 3 23 0 0 0 chr1 12652132 12652155 -230012198 + AT_rich Low_complexity Low_complexity 1 23 0 1904 135 17 3 chr1 12652179 12652475 -230011878 - AluJb SINE Alu -12 300 1 1890 148 0 26 chr1 12652509 12652812 -230011541 - AluJb SINE Alu -17 295 1 1321 171 0 25 chr1 12652848 12653088 -230011265 - AluJb SINE Alu -25 287 54 327 352 0 0 chr1 12653185 12653276 -230011077 + L1MC4 LINE L1 6613 6703 -1339 304 232 29 14 chr1 12653215 12653284 -230011069 - L1MCa LINE L1 -4362 2064 1995 * 705 279 68 8 chr1 12653357 12653594 -230010759 - MIR SINE MIR -1 261 11 1918 143 0 7 chr1 12653666 12653966 -230010387 + AluJb SINE Alu 1 298 -14 2290 76 13 0 chr1 12654750 12655052 -230009301 - AluSq SINE Alu -7 306 1 450 240 151 11 chr1 12655481 12655660 -230008693 - MIR SINE MIR -10 252 49 2155 103 10 3 chr1 12656272 12656583 -230007770 - AluSq SINE Alu 0 313 1 781 183 79 0 chr1 12656821 12656985 -230007368 + MER20 DNA MER1_type 42 218 -1 2259 96 0 0 chr1 12657043 12657346 -230007007 + AluSx SINE Alu 1 303 -9 225 0 0 0 chr1 12657686 12657711 -230006642 + (A)n Simple_repeat Simple_repeat 1 25 0 1965 114 3 23 chr1 12658343 12658642 -230005711 - AluSx SINE Alu -19 293 1 225 244 25 25 chr1 12660154 12660273 -230004080 + (CCCGG)n Simple_repeat Simple_repeat 5 123 0 282 286 251 12 chr1 12660614 12660873 -230003480 + L2 LINE L2 2656 2976 -338 912 214 54 11 chr1 12660876 12661156 -230003197 - MER33 DNA MER1_type -9 315 24 388 284 223 14 chr1 12661173 12661257 -230003096 + L2 LINE L2 2973 3038 -275 2054 102 31 0 chr1 12661257 12661551 -230002802 + AluSx SINE Alu 1 303 -9 388 284 223 14 chr1 12661551 12661744 -230002609 + L2 LINE L2 3038 3308 -5 180 162 0 27 chr1 12662096 12662133 -230002220 + MER5A DNA MER1_type 37 72 -117 2073 113 0 10 chr1 12662139 12662439 -230001914 + AluSx SINE Alu 1 297 -15 1433 144 53 42 chr1 12662449 12662733 -230001620 + AluJo SINE Alu 1 287 -25 1472 193 60 17 chr1 12662789 12663142 -230001211 + L1ME1 LINE L1 5581 5948 -218 252 0 0 0 chr1 12663195 12663223 -230001130 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1848 127 0 0 chr1 12663227 12663494 -230000859 - AluSx SINE Alu -37 275 9 1156 155 43 31 chr1 12663513 12663643 -230000710 - L1MA7 LINE L1 -7 6284 6157 2478 30 0 7 chr1 12663643 12663941 -230000412 - AluY SINE Alu -15 296 1 1156 155 43 31 chr1 12663941 12664068 -230000285 - L1MA7 LINE L1 -134 6157 6024 2123 113 3 25 chr1 12664068 12664386 -229999967 - AluSx SINE Alu -1 311 1 808 247 10 81 chr1 12664393 12664689 -229999664 + MER21B LTR ERV1 16 290 -573 2221 88 7 3 chr1 12664702 12664999 -229999354 + AluY SINE Alu 1 298 -13 1572 209 77 5 chr1 12665020 12665106 -229999247 + MER21B LTR ERV1 392 470 -393 2073 123 7 0 chr1 12665106 12665408 -229998945 + AluSg SINE Alu 1 304 -6 1572 209 77 5 chr1 12665408 12665713 -229998640 + MER21B LTR ERV1 470 811 -52 894 78 0 47 chr1 12665744 12665843 -229998510 + FLAM_C SINE Alu 12 114 -198 2672 105 3 22 chr1 12665843 12666140 -229998213 + THE1B LTR MaLR 1 291 -73 2124 117 10 0 chr1 12666140 12666440 -229997913 - AluSc SINE Alu -6 303 1 2672 105 3 22 chr1 12666440 12666513 -229997840 + THE1B LTR MaLR 291 364 0 10528 114 48 2 chr1 12666513 12666940 -229997413 + THE1B-int LTR MaLR 1 407 -1173 2356 76 0 16 chr1 12666940 12667255 -229997098 + AluY SINE Alu 1 310 -1 10528 114 48 2 chr1 12667255 12668337 -229996016 + THE1B-int LTR MaLR 407 1580 0 2534 134 3 6 chr1 12668337 12668702 -229995651 + THE1B LTR MaLR 1 364 0 894 78 0 47 chr1 12668702 12668728 -229995625 + FLAM_C SINE Alu 111 133 -179 447 273 30 6 chr1 12668942 12669107 -229995246 + Charlie8 DNA MER1_type 1 169 -2248 216 0 0 0 chr1 12669625 12669649 -229994704 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 253 232 0 0 chr1 12669671 12669727 -229994626 - L2 LINE L2 0 3313 3258 1489 163 4 40 chr1 12669750 12669886 -229994467 - AluJo SINE Alu -37 275 153 2114 100 24 0 chr1 12669886 12670175 -229994178 - AluSx SINE Alu -16 296 1 1489 163 4 40 chr1 12670175 12670314 -229994039 - AluJo SINE Alu -159 153 10 381 227 108 59 chr1 12670329 12670532 -229993821 - L2 LINE L2 -40 3273 3061 1204 211 41 22 chr1 12670576 12670894 -229993459 - MER33 DNA MER1_type 0 324 1 2276 110 0 0 chr1 12670974 12671284 -229993069 + AluY SINE Alu 1 310 -1 323 276 57 32 chr1 12671312 12671435 -229992918 - MIR3 SINE MIR -52 156 31 196 304 0 43 chr1 12671647 12671716 -229992637 + MIR SINE MIR 126 191 -71 490 94 0 0 chr1 12671751 12671815 -229992538 - AluJ/FRAM SINE Alu -23 289 226 829 127 0 16 chr1 12671828 12671954 -229992399 - FLAM_C SINE Alu -17 126 3 1956 133 31 0 chr1 12672047 12672341 -229992012 + AluSx SINE Alu 1 303 -9 577 267 111 19 chr1 12672396 12672658 -229991695 + L2 LINE L2 2973 3258 -55 691 235 48 48 chr1 12672671 12672901 -229991452 - MIR SINE MIR 0 262 33 737 117 5 203 chr1 12672911 12672937 -229991416 - AluJb SINE Alu -19 293 264 2451 57 0 3 chr1 12672937 12673238 -229991115 + AluY SINE Alu 1 300 -11 737 117 5 203 chr1 12673238 12673408 -229990945 - AluJb SINE Alu -48 264 136 216 253 23 58 chr1 12673855 12673942 -229990411 - MIR SINE MIR -66 196 113 244 224 45 45 chr1 12674179 12674246 -229990107 - LTR33 LTR ERVL -302 219 153 1081 245 131 22 chr1 12674456 12674901 -229989452 - LTR1B LTR ERV1 -19 496 7 383 280 91 7 chr1 12674879 12675022 -229989331 - LTR33 LTR ERVL -366 155 1 * 1245 255 95 21 chr1 12675560 12676078 -229988275 - L2 LINE L2 -1077 2237 1682 1969 82 4 0 chr1 12676088 12676343 -229988010 - AluSq SINE Alu -18 295 40 3617 167 24 36 chr1 12676392 12676490 -229987863 - L1MB3 LINE L1 -31 6152 6054 1811 138 48 3 chr1 12676490 12676781 -229987572 - AluJo SINE Alu -8 304 1 3617 167 24 36 chr1 12676781 12677065 -229987288 - L1MB3 LINE L1 -129 6054 5768 2354 89 0 0 chr1 12677065 12677368 -229986985 - AluSx SINE Alu -9 303 1 3617 167 24 36 chr1 12677368 12677708 -229986645 - L1MB3 LINE L1 -415 5768 5438 1105 245 114 8 chr1 12677709 12678068 -229986285 - L2 LINE L2 -1621 1693 1297 860 212 0 0 chr1 12678072 12678223 -229986130 + FRAM SINE Alu 5 155 -11 2129 96 13 13 chr1 12678257 12678582 -229985771 + AluSx SINE Alu 1 312 0 1231 228 126 17 chr1 12678679 12679035 -229985318 + MLT1D LTR MaLR 111 505 0 316 328 105 61 chr1 12679043 12679101 -229985252 - L2 LINE L2 -2033 1281 1227 1562 175 0 7 chr1 12679101 12679370 -229984983 - AluSx SINE Alu -45 267 1 316 328 105 61 chr1 12679370 12679607 -229984746 - L2 LINE L2 -2087 1227 973 291 197 91 0 chr1 12679607 12679673 -229984680 - L2 LINE L2 -2453 861 790 504 262 0 60 chr1 12679701 12679807 -229984546 + MER58B DNA MER1_type 202 298 -2122 1201 196 98 18 chr1 12679807 12680083 -229984270 + AluJb SINE Alu 1 298 -14 504 262 0 60 chr1 12680083 12680125 -229984228 + MER58B DNA MER1_type 298 341 0 327 257 193 12 chr1 12680134 12680305 -229984048 - L2 LINE L2 -2527 787 586 1299 164 0 5 chr1 12680361 12680580 -229983773 - AluSg/x SINE Alu -8 304 87 310 316 127 26 chr1 12680582 12680810 -229983543 + L2 LINE L2 2931 3181 -91 902 148 77 0 chr1 12681388 12681543 -229982810 - FRAM SINE Alu -15 161 1 2250 94 0 0 chr1 12682424 12682721 -229981632 - AluSx SINE Alu -15 297 1 279 0 0 0 chr1 12682958 12682989 -229981364 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 444 187 132 9 chr1 12683697 12683831 -229980522 + MIR SINE MIR 15 145 -63 532 141 0 0 chr1 12683882 12683960 -229980393 + FLAM_A SINE Alu 34 111 -31 1302 198 99 0 chr1 12683960 12684243 -229980110 - AluJb SINE Alu -1 311 1 558 263 142 68 chr1 12684246 12684421 -229979932 + L2 LINE L2 2351 2512 -760 2107 107 3 19 chr1 12684421 12684731 -229979622 + AluSq SINE Alu 1 305 -8 558 263 142 68 chr1 12684731 12685320 -229979033 + L2 LINE L2 2512 3176 -96 946 103 0 22 chr1 12685320 12685456 -229978897 - FLAM_C SINE Alu 0 133 1 558 263 142 68 chr1 12685456 12685508 -229978845 + L2 LINE L2 3176 3223 -49 240 35 0 0 chr1 12685532 12685561 -229978792 + (TGG)n Simple_repeat Simple_repeat 1 29 0 375 196 0 54 chr1 12685569 12685661 -229978692 + Charlie8 DNA MER1_type 75 161 -2256 1885 128 3 40 chr1 12686319 12686623 -229977730 + AluSx SINE Alu 1 293 -19 197 250 50 0 chr1 12686682 12686742 -229977611 - L2 LINE L2 0 3313 3251 188 415 51 0 chr1 12687062 12687180 -229977173 - MIR SINE MIR -81 181 58 819 285 31 0 chr1 12687476 12687704 -229976649 + MIR SINE MIR 28 262 0 1080 236 20 20 chr1 12688750 12689000 -229975353 + MIR SINE MIR 8 257 -5 996 216 27 61 chr1 12689035 12689058 -229975295 + MER58B DNA MER1_type 55 77 -2343 1794 161 0 25 chr1 12689058 12689374 -229974979 - AluJo SINE Alu 0 312 5 996 216 27 61 chr1 12689374 12689428 -229974925 + MER58B DNA MER1_type 77 131 -2289 2115 98 7 0 chr1 12689428 12689724 -229974629 + AluSp SINE Alu 1 298 -15 996 216 27 61 chr1 12689724 12689942 -229974411 + MER58B DNA MER1_type 131 341 0 372 207 145 35 chr1 12690085 12690269 -229974084 - MIR SINE MIR -2 260 50 197 202 67 67 chr1 12690858 12690947 -229973406 - MIR SINE MIR -77 131 43 2339 75 0 10 chr1 12691356 12691662 -229972691 + AluY SINE Alu 1 303 -8 225 0 0 0 chr1 12691664 12691689 -229972664 + (CAGC)n Simple_repeat Simple_repeat 4 28 0 411 276 109 48 chr1 12691889 12692127 -229972226 + MIR SINE MIR 7 252 -10 2393 54 10 0 chr1 12692207 12692505 -229971848 - AluY SINE Alu -10 301 1 430 286 37 48 chr1 12692653 12692838 -229971515 + MIR SINE MIR 7 189 -56 561 226 23 45 chr1 12692891 12693024 -229971329 - MER63A DNA MER1_type -45 165 36 1997 138 23 0 chr1 12693101 12693406 -229970947 + AluSx SINE Alu 1 312 0 244 279 47 23 chr1 12693700 12693786 -229970567 + MIR SINE MIR 80 150 -58 802 175 81 6 chr1 12693847 12694007 -229970346 + MER20 DNA MER1_type 1 172 -47 2080 125 0 0 chr1 12694012 12694330 -229970023 - AluSx SINE Alu 0 318 1 599 172 0 0 chr1 12694349 12694448 -229969905 - FLAM_C SINE Alu -4 139 41 277 214 18 0 chr1 12694670 12694726 -229969627 + LTR67 LTR ERVL 97 153 -404 * 504 264 78 86 chr1 12694687 12695073 -229969280 + MLT1J LTR MaLR 110 492 -19 233 321 74 74 chr1 12695995 12696291 -229968062 + L2 LINE L2 2977 3272 0 1556 163 21 18 chr1 12696751 12697058 -229967295 - AluJo SINE Alu 0 308 1 217 250 0 0 chr1 12697179 12697235 -229967118 + GA-rich Low_complexity Low_complexity 1 56 0 372 138 0 0 chr1 12698041 12698106 -229966247 + (CA)n Simple_repeat Simple_repeat 2 66 0 225 211 0 135 chr1 12698826 12698982 -229965371 + (CCCCG)n Simple_repeat Simple_repeat 2 136 0 1885 108 4 4 chr1 12699874 12700142 -229964211 - AluSx SINE Alu -4 308 41 1326 286 102 1 chr1 12700269 12700789 -229963564 + L2 LINE L2 2732 3309 -4 347 242 133 8 chr1 12700889 12701009 -229963344 - L2 LINE L2 0 3272 3138 205 167 156 33 chr1 12701094 12701184 -229963169 + L2 LINE L2 2999 3099 -173 * 559 216 12 37 chr1 12701182 12701344 -229963009 - L2 LINE L2 -205 3067 2910 905 150 0 0 chr1 12701483 12701616 -229962737 + AluSx SINE Alu 42 174 -138 1753 236 72 9 chr1 12701630 12702062 -229962291 - L1ME1 LINE L1 -90 6076 5618 704 267 90 24 chr1 12703273 12703700 -229960653 - HAL1 LINE L1 -428 2079 1596 382 147 29 0 chr1 12703929 12703997 -229960356 + L1ME LINE L1 5615 5684 -482 1006 180 6 6 chr1 12703997 12704180 -229960173 + AluJo SINE Alu 126 308 -4 464 205 25 10 chr1 12704185 12704316 -229960037 + L1ME LINE L1 5652 5790 -374 2369 76 0 3 chr1 12704610 12704931 -229959422 + AluSg SINE Alu 1 320 0 377 248 81 43 chr1 12704938 12705099 -229959254 - LTR41 LTR ERVL -606 167 1 254 286 30 75 chr1 12705100 12705233 -229959120 - HAL1 LINE L1 -1436 1071 945 2370 96 0 0 chr1 12705363 12705655 -229958698 + AluSx SINE Alu 1 292 -20 1754 197 8 16 chr1 12705694 12706080 -229958273 + L1PB4 LINE L1 5774 6156 0 2311 117 0 0 chr1 12706391 12706699 -229957654 + AluSx SINE Alu 1 308 -4 2274 95 7 3 chr1 12706960 12707256 -229957097 - AluSq SINE Alu -16 297 1 2217 109 3 0 chr1 12707494 12707787 -229956566 + AluSp SINE Alu 1 294 -19 230 225 14 14 chr1 12708356 12708427 -229955926 + L1ME LINE L1 5857 5927 -237 316 286 9 0 chr1 12708507 12708612 -229955741 + L1MA10 LINE L1 6229 6334 0 305 285 53 33 chr1 12708609 12708760 -229955593 + L1MC5 LINE L1 7772 7925 -36 * 2464 87 0 10 chr1 12708768 12709080 -229955273 + AluSg SINE Alu 1 309 -1 810 248 26 43 chr1 12709448 12709678 -229954675 - MIR SINE MIR -25 237 12 461 263 78 35 chr1 12709778 12710000 -229954353 + MLT1G LTR MaLR 1 197 -370 396 167 0 0 chr1 12710000 12710096 -229954257 + CT-rich Low_complexity Low_complexity 2 97 0 891 147 0 0 chr1 12710097 12710274 -229954079 + (TC)n Simple_repeat Simple_repeat 2 178 0 1076 98 0 0 chr1 12710302 12710435 -229953918 + AluSq/x SINE Alu 1 133 -180 837 242 72 16 chr1 12710451 12710774 -229953579 + MLT1G LTR MaLR 163 590 0 1687 188 10 29 chr1 12711079 12711388 -229952965 + AluJb SINE Alu 1 303 -9 423 288 125 0 chr1 12711412 12711572 -229952781 + MIR SINE MIR 13 192 -70 2352 96 3 6 chr1 12712293 12712605 -229951748 + AluSx SINE Alu 1 311 -1 443 232 159 0 chr1 12712720 12712871 -229951482 + L1ME LINE L1 5645 5819 -347 2532 62 3 10 chr1 12712874 12713179 -229951174 + AluSq SINE Alu 1 303 -10 589 289 39 19 chr1 12714342 12714550 -229949803 + MLT1K LTR MaLR 22 233 -355 346 147 13 80 chr1 12714723 12714798 -229949555 + MLT1K LTR MaLR 449 518 -70 2139 98 29 0 chr1 12714935 12715236 -229949117 - AluSx SINE Alu 0 309 1 236 359 39 0 chr1 12715238 12715341 -229949012 + MIR SINE MIR 135 241 -21 2348 103 0 3 chr1 12715398 12715700 -229948653 + AluSg SINE Alu 2 302 -8 307 323 44 6 chr1 12715806 12715964 -229948389 + MIR SINE MIR 64 227 -35 1070 179 94 55 chr1 12716103 12716349 -229948004 - MER33 DNA MER1_type -2261 324 62 2301 121 0 13 chr1 12716349 12716662 -229947691 - AluSx SINE Alu -3 309 1 1070 179 94 55 chr1 12716662 12716723 -229947630 - MER33 DNA MER1_type -2523 62 5 224 329 24 0 chr1 12716898 12716983 -229947370 - MIR3 SINE MIR -28 180 94 555 326 66 43 chr1 12717170 12717609 -229946744 - L2 LINE L2 -5 3267 2819 905 206 28 0 chr1 12717629 12717809 -229946544 + L1MDa LINE L1 16 200 -6340 2349 114 0 3 chr1 12717811 12718119 -229946234 - AluSq SINE Alu -6 307 1 225 0 0 0 chr1 12718176 12718201 -229946152 + (TG)n Simple_repeat Simple_repeat 1 25 0 282 87 0 0 chr1 12718201 12718247 -229946106 + (GA)n Simple_repeat Simple_repeat 2 47 0 1070 242 33 18 chr1 12719569 12719592 -229944761 + L1MC2 LINE L1 5279 5300 -884 2497 148 24 38 chr1 12719592 12719982 -229944371 + L1MC2 LINE L1 5840 6223 -121 1942 108 6 79 chr1 12719982 12720297 -229944056 + AluJb SINE Alu 1 292 -20 2497 148 24 38 chr1 12720297 12720407 -229943946 + L1MC2 LINE L1 6223 6333 -11 2314 77 35 3 chr1 12720407 12720693 -229943660 - AluSx SINE Alu -17 295 1 1070 242 33 18 chr1 12720693 12720949 -229943404 + L1MC2 LINE L1 5299 5508 -676 2177 113 0 0 chr1 12720949 12721254 -229943099 + AluSx SINE Alu 1 305 0 305 315 51 73 chr1 12721581 12721725 -229942628 + HAL1 LINE L1 826 972 -1535 6443 134 41 35 chr1 12721725 12721800 -229942553 + Tigger3b DNA MER2_type 4 77 -2951 2288 81 30 10 chr1 12721800 12722096 -229942257 + AluSx SINE Alu 1 302 -10 6443 134 41 35 chr1 12722096 12722327 -229942026 + Tigger3b DNA MER2_type 77 305 -2723 1989 135 7 10 chr1 12722327 12722631 -229941722 - AluJb SINE Alu -9 303 1 6443 134 41 35 chr1 12722631 12722799 -229941554 + Tigger3b DNA MER2_type 305 470 -2558 2408 106 0 0 chr1 12722799 12723100 -229941253 - AluSx SINE Alu -11 301 1 6443 134 41 35 chr1 12723100 12723574 -229940779 + Tigger3b DNA MER2_type 470 966 -2062 2309 118 0 6 chr1 12723574 12723888 -229940465 - AluSx SINE Alu 0 312 1 6443 134 41 35 chr1 12723888 12724155 -229940198 + Tigger3b DNA MER2_type 966 1230 -1 305 315 51 73 chr1 12724155 12724188 -229940165 + HAL1 LINE L1 972 999 -1508 620 209 8 22 chr1 12724193 12724327 -229940026 + FLAM_A SINE Alu 1 132 -1 2220 123 20 0 chr1 12724330 12724631 -229939722 + AluSx SINE Alu 1 307 -5 1542 250 70 74 chr1 12724631 12725442 -229938911 + HAL1b LINE L1 534 1341 -7 533 269 67 64 chr1 12725575 12726010 -229938343 + L1M4 LINE L1 2326 2761 -3385 535 268 49 18 chr1 12726150 12726314 -229938039 + MIR SINE MIR 20 188 -74 335 293 8 73 chr1 12727024 12727147 -229937206 + MIR SINE MIR 147 261 -1 1081 130 24 93 chr1 12727219 12727466 -229936887 - MER30 DNA MER1_type 0 230 1 933 261 77 41 chr1 12727528 12728024 -229936329 + MLT1K LTR MaLR 133 577 -11 1310 239 91 42 chr1 12728026 12728186 -229936167 - Charlie4a DNA MER1_type -1455 506 355 2503 74 0 0 chr1 12728186 12728484 -229935869 + AluSq SINE Alu 1 298 -15 1310 239 91 42 chr1 12728484 12728805 -229935548 - Charlie4a DNA MER1_type -1606 355 1 2534 87 0 0 chr1 12728848 12729160 -229935193 + AluSx SINE Alu 1 312 0 364 228 148 29 chr1 12729214 12729505 -229934848 + L2 LINE L2 2699 3047 -225 430 70 0 0 chr1 12729634 12729691 -229934662 + AluSx SINE Alu 4 60 -253 2179 102 41 3 chr1 12729691 12729984 -229934369 - AluY SINE Alu -7 304 1 1775 135 0 0 chr1 12729984 12730228 -229934125 + AluSx SINE Alu 53 296 -16 933 222 81 63 chr1 12730488 12730668 -229933685 + MLT1B LTR MaLR 1 176 -214 2364 95 3 0 chr1 12730668 12730963 -229933390 + AluSx SINE Alu 1 296 -16 2569 70 0 3 chr1 12730965 12731277 -229933076 + AluY SINE Alu 1 311 0 933 222 81 63 chr1 12731277 12731303 -229933050 + MLT1B LTR MaLR 176 200 -190 1696 171 25 4 chr1 12731303 12731584 -229932769 + AluJo SINE Alu 4 290 -22 933 222 81 63 chr1 12731584 12731699 -229932654 + MLT1B LTR MaLR 200 337 -53 2130 131 12 6 chr1 12731699 12732034 -229932319 + MER1B DNA MER1_type 1 337 0 933 222 81 63 chr1 12732034 12732090 -229932263 + MLT1B LTR MaLR 337 390 0 1154 216 131 21 chr1 12732261 12732558 -229931795 + LTR16C LTR ERVL 127 465 -26 1932 171 26 28 chr1 12732558 12732949 -229931404 - MLT1B LTR MaLR 0 390 1 1154 216 131 21 chr1 12732949 12732980 -229931373 + LTR16C LTR ERVL 465 491 0 784 202 8 19 chr1 12733126 12733784 -229930569 + (TGGA)n Simple_repeat Simple_repeat 1 650 0 679 187 12 18 chr1 12733804 12733975 -229930378 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 321 219 10 52 chr1 12734438 12734534 -229929819 - L2 LINE L2 0 3313 3222 300 167 0 0 chr1 12734657 12734711 -229929642 - Alu SINE Alu -1 301 248 320 271 193 28 chr1 12735334 12735515 -229928838 + MIR SINE MIR 52 262 0 311 313 9 9 chr1 12735526 12735638 -229928715 + L3 LINE CR1 1430 1541 -36 2239 126 0 0 chr1 12736305 12736607 -229927746 + AluSx SINE Alu 1 302 -10 542 15 15 0 chr1 12736634 12736701 -229927652 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 243 266 9 37 chr1 12736726 12736793 -229927560 + (TGGA)n Simple_repeat Simple_repeat 3 67 -41 1573 172 36 21 chr1 12736793 12737177 -229927176 + MLT1B LTR MaLR 1 390 0 243 266 9 37 chr1 12737177 12737218 -229927135 + (TGGA)n Simple_repeat Simple_repeat 67 108 0 263 232 0 10 chr1 12737231 12737330 -229927023 + (TGGG)n Simple_repeat Simple_repeat 2 99 0 809 155 0 42 chr1 12738221 12738363 -229925990 + AluJo SINE Alu 1 136 -176 2433 103 3 0 chr1 12738363 12738675 -229925678 + AluSq SINE Alu 1 313 0 373 270 103 107 chr1 12738730 12738963 -229925390 + MIR SINE MIR 17 248 -14 346 225 307 0 chr1 12739430 12739648 -229924705 + L2 LINE L2 2355 2639 -675 2784 262 59 21 chr1 12739686 12740070 -229924283 - L1ME3A LINE L1 -10 6160 5792 2058 155 7 0 chr1 12740070 12740366 -229923987 - AluSx SINE Alu -14 298 1 2784 262 59 21 chr1 12740366 12741149 -229923204 - L1ME3A LINE L1 -378 5792 4942 2009 149 3 16 chr1 12741193 12741509 -229922844 - AluJb SINE Alu 0 312 1 255 104 31 62 chr1 12741714 12741810 -229922543 + GA-rich Low_complexity Low_complexity 4 96 0 453 143 12 0 chr1 12742748 12742832 -229921521 - MIR SINE MIR -58 150 66 2253 109 0 7 chr1 12742913 12743215 -229921138 + AluSq SINE Alu 1 300 -13 2310 118 0 6 chr1 12743524 12743838 -229920515 + AluSx SINE Alu 1 312 0 337 213 291 0 chr1 12744784 12744911 -229919442 + MER5A DNA MER1_type 10 173 -16 402 234 38 13 chr1 12745000 12745117 -229919236 - MIR SINE MIR -63 145 25 2322 112 0 3 chr1 12745188 12745491 -229918862 - AluSx SINE Alu -10 302 1 664 128 29 0 chr1 12745788 12745890 -229918463 + U6 snRNA snRNA 1 105 -2 202 365 10 10 chr1 12745894 12745990 -229918363 + L2 LINE L2 2766 2861 -453 239 308 92 23 chr1 12746031 12746161 -229918192 + L2 LINE L2 2937 3075 -197 1460 224 24 15 chr1 12746173 12746513 -229917840 - MLT1E2 LTR MaLR -177 449 107 1573 146 94 26 chr1 12746549 12746816 -229917537 + AluJb SINE Alu 1 285 -27 2147 129 131 32 chr1 12747295 12747373 -229916980 - LTR19A LTR ERV1 0 486 417 2489 93 3 0 chr1 12747373 12747685 -229916668 + AluSp SINE Alu 1 313 0 2147 129 131 32 chr1 12747685 12748048 -229916305 - LTR19A LTR ERV1 -69 417 1 453 177 21 135 chr1 12748118 12748310 -229916043 + MLT1D LTR MaLR 62 231 -274 881 119 0 15 chr1 12748387 12748521 -229915832 + AluJo/FLAM SINE Alu 1 132 -170 2417 83 7 0 chr1 12748521 12748811 -229915542 - AluSx SINE Alu -20 292 1 559 172 0 0 chr1 12748830 12748929 -229915424 - FLAM_C SINE Alu -4 139 41 273 214 18 0 chr1 12749151 12749207 -229915146 + LTR67 LTR ERVL 97 153 -404 * 471 267 75 83 chr1 12749168 12749554 -229914799 + MLT1J LTR MaLR 110 492 -19 195 321 74 74 chr1 12750476 12750772 -229913581 + L2 LINE L2 2977 3272 0 1674 163 21 18 chr1 12751232 12751539 -229912814 - AluJo SINE Alu 0 308 1 217 250 0 0 chr1 12751660 12751716 -229912637 + GA-rich Low_complexity Low_complexity 1 56 0 318 153 0 0 chr1 12752522 12752581 -229911772 + (CA)n Simple_repeat Simple_repeat 2 60 0 225 211 0 135 chr1 12753301 12753457 -229910896 + (CCCCG)n Simple_repeat Simple_repeat 2 136 0 1860 114 4 4 chr1 12754349 12754613 -229909740 - AluSx SINE Alu -8 304 41 1388 285 102 1 chr1 12754740 12755260 -229909093 + L2 LINE L2 2732 3309 -4 360 242 133 8 chr1 12755360 12755480 -229908873 - L2 LINE L2 0 3272 3138 222 174 139 35 chr1 12755565 12755651 -229908702 + L2 LINE L2 2999 3093 -179 557 211 13 39 chr1 12755659 12755815 -229908538 - L2 LINE L2 -211 3061 2910 221 340 99 7 chr1 12756405 12756546 -229907807 + L2 LINE L2 2966 3119 -153 249 196 0 0 chr1 12756768 12756814 -229907539 - MIR SINE MIR -12 250 205 265 235 31 41 chr1 12756827 12756925 -229907428 + LTR16A1 LTR ERVL 3 99 -358 * 715 194 152 9 chr1 12756915 12757126 -229907227 + LTR16A1 LTR ERVL 217 457 0 548 296 10 40 chr1 12757128 12757327 -229907026 - MIR SINE MIR -62 200 8 2092 123 3 16 chr1 12757377 12757693 -229906660 + AluSx SINE Alu 1 312 0 430 276 15 14 chr1 12758187 12758333 -229906020 + MIR SINE MIR 15 148 -60 181 338 105 46 chr1 12758721 12759044 -229905309 + L2 LINE L2 2904 3245 -27 1218 55 0 16 chr1 12760976 12761159 -229903194 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 359 337 72 28 chr1 12761160 12761356 -229902997 + L1M4 LINE L1 3118 3329 -2817 243 0 0 0 chr1 12761356 12761383 -229902970 + (GA)n Simple_repeat Simple_repeat 2 28 0 359 337 72 28 chr1 12761383 12761435 -229902918 + L1M4 LINE L1 3329 3377 -2769 243 311 35 0 chr1 12761437 12761546 -229902807 - MIR SINE MIR -63 145 54 268 319 175 9 chr1 12762079 12762246 -229902107 - MIR SINE MIR -11 251 49 189 0 0 0 chr1 12762246 12762267 -229902086 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 268 319 175 9 chr1 12762267 12762289 -229902064 - MIR SINE MIR -213 49 32 * 343 340 80 25 chr1 12762271 12762433 -229901920 - L2 LINE L2 -37 3276 3106 349 331 21 21 chr1 12762544 12762689 -229901664 - MIR SINE MIR -10 252 108 286 206 8 13 chr1 12762805 12762882 -229901471 + MIR3 SINE MIR 92 170 -38 253 311 0 48 chr1 12763308 12763411 -229900942 + MIR SINE MIR 91 188 -74 886 124 0 29 chr1 12764545 12764682 -229899671 - FLAM_C SINE Alu 0 133 1 517 303 79 22 chr1 12764910 12765138 -229899215 - MIR SINE MIR -21 241 1 294 260 104 15 chr1 12765139 12765264 -229899089 - MIR3 SINE MIR -48 160 29 249 317 85 0 chr1 12765697 12765779 -229898574 - L2 LINE L2 -41 3231 3143 401 317 41 0 chr1 12766393 12766516 -229897837 + MIR SINE MIR 118 245 -17 505 291 73 55 chr1 12766793 12767013 -229897340 + MIR SINE MIR 31 254 -8 1027 114 0 0 chr1 12767014 12767154 -229897199 - AluSg/x SINE Alu -8 302 163 2121 106 0 13 chr1 12767523 12767825 -229896528 + AluSq SINE Alu 1 298 -15 315 319 145 0 chr1 12768033 12768171 -229896182 + L2 LINE L2 2600 2757 -557 527 301 42 67 chr1 12768198 12768437 -229895916 + MIR SINE MIR 9 241 -21 2117 97 0 14 chr1 12768584 12768897 -229895456 - AluSx SINE Alu 0 309 1 299 321 66 0 chr1 12769488 12769625 -229894728 - MIR3 SINE MIR -33 175 30 2178 96 0 0 chr1 12770282 12770562 -229893791 + AluSx SINE Alu 1 280 -32 1140 49 0 0 chr1 12770562 12770705 -229893648 + (GGAGAA)n Simple_repeat Simple_repeat 3 145 0 490 314 0 7 chr1 12771630 12771770 -229892583 - MIR3 SINE MIR -67 141 3 524 266 76 6 chr1 12772402 12772560 -229891793 - MIR SINE MIR -74 188 20 627 284 191 34 chr1 12772944 12772991 -229891362 - L2 LINE L2 -13 3300 3262 922 189 122 10 chr1 12772991 12773187 -229891166 + MER20 DNA MER1_type 1 218 -1 627 284 191 34 chr1 12773187 12773494 -229890859 - L2 LINE L2 -51 3262 2890 2088 121 0 34 chr1 12773516 12773839 -229890514 + AluSx SINE Alu 1 312 0 1917 129 0 42 chr1 12773854 12774165 -229890188 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr1 12774633 12774654 -229889699 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 375 291 112 63 chr1 12775301 12775524 -229888829 + MIR SINE MIR 16 249 -13 194 339 108 15 chr1 12775937 12776132 -229888221 - L2 LINE L2 -556 2758 2546 23 33 0 0 chr1 12777876 12777906 -229886447 + GC_rich Low_complexity Low_complexity 1 30 0 1540 113 106 68 chr1 12778232 12778525 -229885828 - AluJo SINE Alu -8 304 1 204 206 0 0 chr1 12778531 12778565 -229885788 + MIR SINE MIR 29 62 -200 207 333 38 38 chr1 12779477 12779609 -229884744 + L2 LINE L2 2300 2431 -883 360 210 50 50 chr1 12780209 12780309 -229884044 - L2 LINE L2 -20 3293 3194 857 180 9 68 chr1 12780840 12781062 -229883291 + MER20 DNA MER1_type 7 215 -4 290 340 33 26 chr1 12781224 12781377 -229882976 + L2 LINE L2 2919 3072 -200 225 0 0 0 chr1 12781835 12781860 -229882493 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 197 268 0 0 chr1 12782255 12782296 -229882057 - L2 LINE L2 -10 3303 3263 381 269 162 9 chr1 12782315 12782463 -229881890 - MER5A DNA MER1_type -1 188 7 381 238 31 31 chr1 12783212 12783327 -229881026 + MIR3 SINE MIR 42 160 -48 499 304 71 0 chr1 12783327 12783511 -229880842 + MER117 DNA MER1_type 1 197 0 381 238 31 31 chr1 12783511 12783549 -229880804 + MIR3 SINE MIR 160 196 -12 1959 145 14 0 chr1 12783793 12784083 -229880270 - AluJb SINE Alu -18 294 1 1972 113 0 35 chr1 12784083 12784394 -229879959 - AluSx SINE Alu -12 300 1 721 185 37 0 chr1 12784429 12784564 -229879789 - FLAM_C SINE Alu -3 140 1 24 32 0 0 chr1 12784606 12784637 -229879716 + AT_rich Low_complexity Low_complexity 1 31 0 937 274 161 13 chr1 12784701 12785091 -229879262 + L2 LINE L2 2863 3310 -3 1206 112 0 0 chr1 12785109 12785270 -229879083 - AluSg/x SINE Alu -14 296 136 2298 70 0 7 chr1 12785274 12785575 -229878778 - AluSg SINE Alu -11 299 1 297 330 28 65 chr1 12785970 12786294 -229878059 - L1ME LINE L1 -382 5780 5469 540 297 23 76 chr1 12787191 12787857 -229876496 - L1M3 LINE L1 -665 5518 4890 2142 141 0 0 chr1 12787906 12788218 -229876135 - AluJb SINE Alu 0 312 1 539 310 125 34 chr1 12788220 12788585 -229875768 - L1ME LINE L1 -1089 5057 4624 2237 87 3 7 chr1 12788585 12788884 -229875469 - AluSc SINE Alu -11 298 1 539 310 125 34 chr1 12788884 12789070 -229875283 - L1ME LINE L1 -1522 4624 4456 2414 53 0 38 chr1 12790063 12790383 -229873970 + AluY SINE Alu 1 308 -3 327 254 41 49 chr1 12790383 12790505 -229873848 + L1ME4a LINE L1 5929 6049 -72 1902 155 0 19 chr1 12790517 12790827 -229873526 - AluSx SINE Alu -8 304 1 338 297 42 8 chr1 12790935 12791053 -229873300 + MIR3 SINE MIR 41 162 -46 728 257 76 34 chr1 12791988 12792225 -229872128 + MIR SINE MIR 4 250 -12 203 262 180 0 chr1 12792787 12792848 -229871505 + L2 LINE L2 3242 3313 0 355 225 0 0 chr1 12792856 12792927 -229871426 - MIR SINE MIR -75 187 117 416 238 21 63 chr1 12793025 12793168 -229871185 + L2 LINE L2 3134 3270 -2 816 282 32 0 chr1 12793706 12793926 -229870427 + MIR SINE MIR 2 228 -34 190 316 103 17 chr1 12793926 12794043 -229870310 + L2 LINE L2 3141 3267 -5 199 260 0 20 chr1 12794489 12794539 -229869814 + MIR SINE MIR 17 65 -197 670 261 83 15 chr1 12794674 12795097 -229869256 + MLT1G1 LTR MaLR 72 595 0 787 206 18 6 chr1 12795244 12795414 -229868939 - MER45A DNA AcHobo 0 178 7 349 259 0 0 chr1 12795652 12795733 -229868620 + MIR3 SINE MIR 85 165 -43 1892 131 7 17 chr1 12795877 12796175 -229868178 + AluJo SINE Alu 18 312 0 184 263 66 102 chr1 12796299 12796436 -229867917 + MIR SINE MIR 83 214 -48 294 374 8 8 chr1 12796495 12796626 -229867727 + MIR SINE MIR 15 145 -117 2210 122 0 0 chr1 12796799 12797102 -229867251 - AluSx SINE Alu -9 303 1 290 341 166 12 chr1 12797739 12798070 -229866283 + L2 LINE L2 2836 3217 -96 492 271 25 0 chr1 12798504 12798626 -229865727 - MIR SINE MIR -87 175 51 537 327 111 30 chr1 12799936 12800017 -229864336 + L3 LINE CR1 1209 1282 -295 2332 85 0 10 chr1 12800017 12800322 -229864031 - AluSq SINE Alu -11 302 1 537 327 111 30 chr1 12800322 12800573 -229863780 + L3 LINE CR1 1282 1568 -9 342 338 37 22 chr1 12802884 12803020 -229861333 - MIR SINE MIR -48 214 77 501 206 19 9 chr1 12803101 12803208 -229861145 - MER81 DNA DNA -2 112 5 1280 123 0 11 chr1 12804884 12805071 -229859282 + AluSx SINE Alu 1 185 -127 289 363 45 49 chr1 12805216 12805749 -229858604 - L2 LINE L2 -92 3180 2621 404 293 29 14 chr1 12805838 12805978 -229858375 + MIR3 SINE MIR 7 148 -60 203 359 39 0 chr1 12806157 12806235 -229858118 - MIR SINE MIR -50 212 132 842 272 46 13 chr1 12806793 12807032 -229857321 - MIR SINE MIR -2 260 14 21 0 0 0 chr1 12807211 12807232 -229857121 + AT_rich Low_complexity Low_complexity 1 21 0 252 77 0 0 chr1 12807241 12807280 -229857073 + (A)n Simple_repeat Simple_repeat 1 39 0 229 139 23 0 chr1 12807455 12807498 -229856855 + MADE1 DNA Mariner 1 44 -36 1693 32 0 28 chr1 12807718 12807935 -229856418 + SVA Other Other 1176 1386 0 2054 130 0 3 chr1 12808153 12808454 -229855899 - AluSx SINE Alu -12 300 1 2166 108 0 7 chr1 12809482 12809789 -229854564 - AluSg SINE Alu -5 305 1 2047 102 46 0 chr1 12810769 12811052 -229853301 - AluSx SINE Alu -16 296 1 2489 57 0 0 chr1 12811060 12811360 -229852993 - AluSc SINE Alu -9 300 1 297 283 171 13 chr1 12811362 12811514 -229852839 - MARNA DNA Mariner -194 392 217 324 290 109 7 chr1 12811628 12811766 -229852587 + L1ME LINE L1 5601 5752 -369 280 315 39 16 chr1 12811807 12811934 -229852419 + MIR SINE MIR 78 207 -55 2014 205 58 25 chr1 12811939 12811958 -229852395 + L1MC3 LINE L1 7270 7287 -498 2278 104 0 0 chr1 12811958 12812266 -229852087 - AluSx SINE Alu -4 308 1 2014 205 58 25 chr1 12812266 12812725 -229851628 + L1MC3 LINE L1 7287 7764 -21 2210 100 0 0 chr1 12812730 12813020 -229851333 + AluSg SINE Alu 1 290 -20 1626 141 65 10 chr1 12813028 12813318 -229851035 + AluJo SINE Alu 1 306 -6 2052 117 0 0 chr1 12813334 12813646 -229850707 - AluSx SINE Alu 0 312 1 29 0 0 0 chr1 12813653 12813682 -229850671 + AT_rich Low_complexity Low_complexity 1 29 0 1208 196 45 11 chr1 12814326 12814592 -229849761 + L1MC4 LINE L1 6814 7088 -954 2040 117 0 19 chr1 12814603 12814919 -229849434 + AluSx SINE Alu 1 310 -2 1718 272 79 11 chr1 12814919 12815540 -229848813 + L1MC4 LINE L1 7238 7900 -142 2295 88 0 0 chr1 12815681 12815986 -229848367 + AluSg SINE Alu 1 305 -5 874 188 172 0 chr1 12815994 12816180 -229848173 + MER20 DNA MER1_type 1 218 -1 433 290 74 6 chr1 12816208 12816370 -229847983 + MIR SINE MIR 57 229 -33 213 39 0 0 chr1 12816949 12816975 -229847378 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 205 301 36 0 chr1 12817418 12817501 -229846852 + MIR SINE MIR 62 147 -61 591 283 24 0 chr1 12817947 12818113 -229846240 - MIR SINE MIR -37 225 56 206 208 19 0 chr1 12818172 12818225 -229846128 + GA-rich Low_complexity Low_complexity 2 55 0 491 284 6 35 chr1 12819367 12819536 -229844817 - MIR SINE MIR -88 174 11 624 204 161 0 chr1 12819673 12819835 -229844518 - MER5A DNA MER1_type -1 188 1 2104 83 0 28 chr1 12819929 12820275 -229844078 - AluSg SINE Alu 0 338 1 223 293 98 0 chr1 12820320 12820402 -229843951 - MIR SINE MIR -87 175 86 1953 117 7 17 chr1 12820508 12820806 -229843547 + AluSx SINE Alu 1 295 -17 2024 119 20 0 chr1 12821688 12821981 -229842372 + AluSx SINE Alu 1 299 -13 250 302 56 24 chr1 12821983 12822109 -229842244 - Charlie8 DNA MER1_type -2196 221 92 2112 136 0 0 chr1 12822142 12822452 -229841901 - AluSx SINE Alu -2 310 1 374 118 17 17 chr1 12822608 12822678 -229841675 - AluS SINE Alu -246 57 1 936 172 7 0 chr1 12822681 12822858 -229841495 + AluJo/FRAM SINE Alu 132 309 0 2202 114 0 0 chr1 12823056 12823362 -229840991 + AluSx SINE Alu 1 306 -6 2135 105 6 13 chr1 12823740 12824054 -229840299 + AluSx SINE Alu 1 312 0 432 149 32 0 chr1 12824105 12824199 -229840154 + GA-rich Low_complexity Low_complexity 3 99 0 1336 143 120 23 chr1 12824348 12824630 -229839723 - AluJb SINE Alu 0 307 1 878 207 46 50 chr1 12825380 12825641 -229838712 - MIR SINE MIR -2 260 1 985 102 0 0 chr1 12825649 12825777 -229838576 + AluSq/x SINE Alu 11 138 -174 1695 96 4 0 chr1 12825778 12826007 -229838346 + AluSq SINE Alu 6 235 -78 730 259 80 13 chr1 12826039 12826183 -229838170 + MLT1D LTR MaLR 216 349 -156 1866 141 4 0 chr1 12826183 12826460 -229837893 - AluSx SINE Alu -17 295 18 730 259 80 13 chr1 12826460 12826563 -229837790 + MLT1D LTR MaLR 349 505 0 295 322 148 19 chr1 12826740 12827010 -229837343 + L2 LINE L2 2236 2540 -774 738 143 17 8 chr1 12827011 12827130 -229837223 + AluJo/FLAM SINE Alu 1 120 -192 1957 69 4 15 chr1 12827131 12827392 -229836961 + AluY SINE Alu 50 307 -4 528 269 229 32 chr1 12827410 12827982 -229836371 + L2 LINE L2 2596 3313 0 409 317 174 17 chr1 12827983 12828155 -229836198 + L3 LINE CR1 1135 1279 -298 2236 97 7 3 chr1 12828155 12828464 -229835889 + AluSq SINE Alu 1 310 -3 2364 84 0 3 chr1 12828464 12828772 -229835581 + AluSg SINE Alu 1 307 -3 409 317 174 17 chr1 12828772 12828891 -229835462 + L3 LINE CR1 1278 1473 -104 196 241 23 81 chr1 12829212 12829299 -229835054 + MIR SINE MIR 65 146 -62 21 0 0 0 chr1 12829722 12829743 -229834610 + GC_rich Low_complexity Low_complexity 1 21 0 1819 120 53 7 chr1 12829945 12830228 -229834125 - AluSg SINE Alu -14 296 1 2121 103 7 0 chr1 12830686 12830978 -229833375 + AluSx SINE Alu 5 298 -14 2078 114 3 0 chr1 12830982 12831280 -229833073 + AluSx SINE Alu 1 299 -13 673 334 37 40 chr1 12831473 12832134 -229832219 + L1ME4a LINE L1 5383 6035 -86 24 32 0 0 chr1 12832211 12832242 -229832111 + AT_rich Low_complexity Low_complexity 1 31 0 2230 102 3 0 chr1 12832252 12832556 -229831797 + AluSq SINE Alu 1 305 -8 473 115 115 0 chr1 12832568 12832646 -229831707 + FRAM SINE Alu 74 160 -16 1374 61 0 0 chr1 12834734 12834988 -229829365 + (TGGA)n Simple_repeat Simple_repeat 1 254 0 1416 72 0 3 chr1 12835013 12835372 -229828981 + (TGGA)n Simple_repeat Simple_repeat 1 359 0 533 204 8 0 chr1 12835395 12835527 -229828826 + (TGGA)n Simple_repeat Simple_repeat 4 136 0 736 167 26 0 chr1 12836319 12836433 -229827920 + FLAM_C SINE Alu 2 118 -15 272 279 60 103 chr1 12836480 12837014 -229827339 + L1ME LINE L1 5313 5823 -298 339 261 100 39 chr1 12837189 12837319 -229827034 - MIR SINE MIR 0 262 125 2191 113 3 3 chr1 12838383 12838693 -229825660 - AluSx SINE Alu -2 310 1 592 282 138 0 chr1 12839070 12839265 -229825088 - MIR SINE MIR -12 250 29 194 158 26 0 chr1 12839347 12839385 -229824968 + MIR SINE MIR 78 116 -92 1297 199 51 1 chr1 12839387 12839846 -229824507 - MLT1F LTR MaLR 0 567 24 308 248 177 35 chr1 12840322 12840463 -229823890 + MIR3 SINE MIR 17 177 -31 692 221 44 0 chr1 12840565 12840723 -229823630 + MIR SINE MIR 33 197 -65 1663 184 10 0 chr1 12841278 12841571 -229822782 + AluJo SINE Alu 1 296 -16 187 247 212 0 chr1 12841574 12841659 -229822694 - MIR SINE MIR -130 132 30 288 283 17 8 chr1 12842312 12842432 -229821921 + L2 LINE L2 2865 2985 -328 408 283 65 0 chr1 12842448 12842586 -229821767 + L1MA10 LINE L1 6180 6326 -8 386 244 326 4 chr1 12842611 12842853 -229821500 + L2 LINE L2 2994 3313 0 411 183 0 0 chr1 12843883 12843965 -229820388 + (CA)n Simple_repeat Simple_repeat 1 82 0 1027 169 0 11 chr1 12844400 12844578 -229819775 + FRAM SINE Alu 1 176 0 230 247 39 13 chr1 12844834 12844911 -229819442 - L2 LINE L2 -4 3309 3231 614 254 120 30 chr1 12844911 12845277 -229819076 - L2 LINE L2 -537 2777 2379 248 282 59 0 chr1 12845336 12845421 -229818932 - L2 LINE L2 -218 3054 2965 947 164 0 0 chr1 12845961 12846113 -229818240 + FRAM SINE Alu 14 165 -11 416 293 87 45 chr1 12846149 12846349 -229818004 + MIR SINE MIR 12 219 -43 265 220 230 20 chr1 12846555 12846655 -229817698 + L2 LINE L2 3193 3313 0 2075 69 62 21 chr1 12846661 12846949 -229817404 + AluSq SINE Alu 1 300 -13 1981 131 0 7 chr1 12846979 12847276 -229817077 + AluSx SINE Alu 1 295 -17 1704 145 10 20 chr1 12847368 12847665 -229816688 + AluJo SINE Alu 1 294 -18 356 276 71 0 chr1 12847900 12847998 -229816355 - LTR40a LTR ERVL -319 200 96 283 231 0 15 chr1 12848062 12848127 -229816226 - MLT1B LTR MaLR 0 390 327 1270 147 0 0 chr1 12848127 12848318 -229816035 - AluSp SINE Alu -4 309 119 535 58 14 0 chr1 12848421 12848490 -229815863 - Alu SINE Alu -238 71 2 919 158 7 0 chr1 12848642 12848794 -229815559 + AluSg/x SINE Alu 144 296 -16 1140 158 0 0 chr1 12850318 12850495 -229813858 + FRAM SINE Alu 1 176 0 198 0 0 0 chr1 12850498 12850520 -229813833 + (A)n Simple_repeat Simple_repeat 1 22 0 1855 166 0 0 chr1 12850525 12850820 -229813533 + AluJo SINE Alu 1 295 -17 2307 103 0 0 chr1 12850823 12851133 -229813220 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr1 12851133 12851156 -229813197 + AT_rich Low_complexity Low_complexity 1 23 0 223 187 0 40 chr1 12851568 12851643 -229812710 + CT-rich Low_complexity Low_complexity 5 76 0 2228 85 3 0 chr1 12853956 12854249 -229810104 + AluSp SINE Alu 1 294 -19 185 314 29 0 chr1 12854412 12854482 -229809871 - MIR SINE MIR -67 141 70 2380 63 7 0 chr1 12854719 12855018 -229809335 - AluY SINE Alu -10 301 1 2234 101 0 13 chr1 12855197 12855513 -229808840 - AluSx SINE Alu 0 312 1 2158 149 147 29 chr1 12855778 12856119 -229808234 + MSTB2 LTR MaLR 1 399 -58 2081 103 3 39 chr1 12856119 12856252 -229808101 + AluSc SINE Alu 1 137 -172 2295 57 0 4 chr1 12856252 12856564 -229807789 + AluY SINE Alu 1 311 0 2081 103 3 39 chr1 12856564 12856741 -229807612 + AluSc SINE Alu 137 301 -8 2158 149 147 29 chr1 12856741 12856808 -229807545 + MSTB2 LTR MaLR 399 457 0 1630 193 21 56 chr1 12856928 12856970 -229807383 + MLT1A1 LTR MaLR 5 47 -318 1694 174 30 13 chr1 12856970 12857269 -229807084 - AluJb SINE Alu -8 304 1 1630 193 21 56 chr1 12857269 12857599 -229806754 + MLT1A1 LTR MaLR 47 364 -1 1882 115 45 10 chr1 12857683 12857971 -229806382 - AluJb SINE Alu -14 298 1 1797 179 0 13 chr1 12858015 12858328 -229806025 + AluJo SINE Alu 1 309 -3 837 291 130 23 chr1 12858330 12858815 -229805538 - MLT1K LTR MaLR -33 555 19 374 296 94 19 chr1 12858821 12858980 -229805373 - MIR SINE MIR -80 182 12 349 268 101 53 chr1 12859231 12859296 -229805057 - L2 LINE L2 -64 3208 3148 4339 176 44 54 chr1 12859296 12860260 -229804093 + LTR13 LTR ERVK 1 954 0 349 268 101 53 chr1 12860260 12860422 -229803931 - L2 LINE L2 -124 3148 2970 1791 126 40 11 chr1 12860479 12860757 -229803596 - AluJo SINE Alu -22 290 5 206 324 15 0 chr1 12860942 12861010 -229803343 - MIR3 SINE MIR -53 155 87 1933 215 46 73 chr1 12861097 12861117 -229803236 + MLT2B3 LTR ERVL 1 20 -534 1813 81 0 12 chr1 12861117 12861363 -229802990 + AluSg/x SINE Alu 70 312 0 1933 215 46 73 chr1 12861363 12861904 -229802449 + MLT2B3 LTR ERVL 20 547 -7 2336 64 0 3 chr1 12862067 12862362 -229801991 + AluSx SINE Alu 1 294 -18 225 104 83 0 chr1 12862373 12862421 -229801932 + L1MA3 LINE L1 6254 6305 0 774 75 0 50 chr1 12862746 12862866 -229801487 + U5 snRNA snRNA 2 115 -1 228 170 0 0 chr1 12863076 12863129 -229801224 + (CGGGG)n Simple_repeat Simple_repeat 5 57 0 2391 56 0 34 chr1 12863166 12863486 -229800867 - AluSx SINE Alu -3 309 1 383 201 190 4 chr1 12863529 12863683 -229800670 + MLT1J LTR MaLR 1 140 -310 1334 159 19 41 chr1 12863876 12864147 -229800206 - MER1B DNA MER1_type 0 339 75 813 83 0 42 chr1 12864401 12864521 -229799832 - U5 snRNA snRNA -1 115 1 261 71 0 0 chr1 12864896 12864939 -229799414 + HSMAR1 DNA Mariner 1 43 -37 21 36 0 0 chr1 12864987 12865015 -229799338 + AT_rich Low_complexity Low_complexity 1 28 0 760 168 8 0 chr1 12865018 12865143 -229799210 + FLAM_C SINE Alu 1 126 -7 349 230 80 0 chr1 12865158 12865258 -229799095 + MER5A DNA MER1_type 82 189 0 378 85 41 0 chr1 12865509 12865580 -229798773 + AluJ/FLAM SINE Alu 1 57 -245 213 248 205 0 chr1 12865706 12865823 -229798530 + L2 LINE L2 1046 1186 -2128 2206 102 0 0 chr1 12865911 12866215 -229798138 + AluSx SINE Alu 1 304 -8 1639 171 90 38 chr1 12866460 12866806 -229797547 + MLT1A1 LTR MaLR 2 365 0 224 235 20 0 chr1 12866863 12866914 -229797439 + GA-rich Low_complexity Low_complexity 1 52 0 2302 77 10 0 chr1 12867023 12867321 -229797032 + AluSx SINE Alu 1 301 -11 1267 245 47 1 chr1 12867326 12867712 -229796641 + L1MB5 LINE L1 5663 6105 -79 22 0 0 0 chr1 12867756 12867778 -229796575 + AT_rich Low_complexity Low_complexity 1 22 0 237 170 0 0 chr1 12867778 12867825 -229796528 - Alu SINE Alu -169 133 87 790 187 0 8 chr1 12867832 12867966 -229796387 - FLAM_C SINE Alu 0 133 1 352 259 93 76 chr1 12867968 12868018 -229796335 - L1M4 LINE L1 -2065 4081 4033 2118 123 7 0 chr1 12868018 12868320 -229796033 - AluSc SINE Alu -5 304 1 352 259 93 76 chr1 12868320 12868491 -229795862 - L1M4 LINE L1 -2113 4033 3851 2024 132 3 0 chr1 12868491 12868787 -229795566 - AluSx SINE Alu -13 299 3 352 259 93 76 chr1 12868787 12868865 -229795488 - L1M4 LINE L1 -2295 3851 3776 1103 178 0 0 chr1 12868874 12869059 -229795294 - AluJ SINE Alu -9 303 119 276 269 93 0 chr1 12869063 12869171 -229795182 - L1MC4a LINE L1 -1655 6153 6036 819 142 47 0 chr1 12869203 12869330 -229795023 - AluJ SINE Alu -178 134 2 261 0 0 0 chr1 12869361 12869390 -229794963 + (TG)n Simple_repeat Simple_repeat 2 30 0 2170 129 0 0 chr1 12869422 12869733 -229794620 - AluSx SINE Alu 0 312 2 2064 123 0 3 chr1 12869739 12870039 -229794314 - AluSx SINE Alu -13 299 1 529 318 11 49 chr1 12870039 12870303 -229794050 - LTR24B-int LTR ERV1 -4869 254 1 651 164 72 12 chr1 12870303 12870468 -229793885 - LTR24B LTR ERV1 0 569 277 2442 81 0 0 chr1 12870491 12870800 -229793553 - AluSg SINE Alu -1 309 1 1731 115 93 0 chr1 12870801 12871079 -229793274 - AluSx SINE Alu -8 304 1 1763 148 7 10 chr1 12871079 12871376 -229792977 - AluJb SINE Alu -16 296 1 825 174 0 0 chr1 12871534 12871666 -229792687 + FLAM_C SINE Alu 2 133 0 472 309 42 75 chr1 12871697 12871987 -229792366 + L1ME LINE L1 5313 5593 -528 1929 149 0 0 chr1 12871987 12872275 -229792078 - AluSx SINE Alu -24 288 1 472 309 42 75 chr1 12872275 12872375 -229791978 + L1ME LINE L1 5593 5695 -426 1077 117 32 0 chr1 12872382 12872536 -229791817 - AluSg/x SINE Alu -16 294 136 2155 102 0 3 chr1 12872541 12872836 -229791517 - AluY SINE Alu -17 294 1 209 200 0 0 chr1 12872882 12872917 -229791436 + polypurine Low_complexity Low_complexity 2 36 0 2533 45 0 3 chr1 12874615 12874926 -229789427 - AluY SINE Alu -1 310 1 345 113 32 0 chr1 12874951 12875013 -229789340 - HY3 scRNA scRNA -1 100 37 263 270 35 58 chr1 12875029 12875203 -229789150 - L1MEc LINE L1 -4727 1669 1500 446 293 14 117 chr1 12875203 12875555 -229788798 - L1MC5 LINE L1 -344 7617 7302 2350 90 3 0 chr1 12875665 12875975 -229788378 - AluY SINE Alu 0 311 1 824 119 0 60 chr1 12875986 12876120 -229788233 - FLAM_A SINE Alu -7 126 1 230 283 0 0 chr1 12876148 12876201 -229788152 + Charlie8 DNA MER1_type 1 53 -2364 2060 98 51 0 chr1 12876265 12876560 -229787793 - AluSx SINE Alu 0 312 3 2248 104 3 0 chr1 12876587 12876896 -229787457 - AluSg SINE Alu 0 310 1 725 143 0 53 chr1 12876901 12877034 -229787319 - FLAM_C SINE Alu -7 126 1 69 13 0 0 chr1 12877036 12877112 -229787241 + AT_rich Low_complexity Low_complexity 1 76 0 342 202 124 11 chr1 12877178 12877267 -229787086 - MIR SINE MIR -132 130 32 1191 129 0 5 chr1 12877874 12878330 -229786023 + (TCCA)n Simple_repeat Simple_repeat 2 631 0 590 285 36 6 chr1 12878839 12879004 -229785349 + MIR SINE MIR 24 193 -69 733 185 7 22 chr1 12879412 12879547 -229784806 + FLAM_A SINE Alu 1 133 0 2002 125 7 0 chr1 12879566 12879862 -229784491 + AluSx SINE Alu 1 298 -14 255 302 52 35 chr1 12880557 12880673 -229783680 - HERVL66 LTR ERVL -2770 1559 1442 361 210 64 95 chr1 12880693 12880738 -229783615 + MIR3 SINE MIR 10 55 -200 1650 160 26 13 chr1 12880738 12881045 -229783308 - AluJo SINE Alu 0 312 2 361 210 64 95 chr1 12881045 12881194 -229783159 + MIR3 SINE MIR 55 192 -63 1227 212 25 96 chr1 12881526 12881974 -229782379 - LTR5 LTR ERVK -14 955 540 2170 66 59 0 chr1 12881974 12882261 -229782092 - AluY SINE Alu -7 304 1 2723 188 13 6 chr1 12882271 12882807 -229781546 - LTR5 LTR ERVK -429 540 1 261 203 0 95 chr1 12882813 12882887 -229781466 + Charlie8 DNA MER1_type 1360 1426 -991 2069 129 0 22 chr1 12882906 12883224 -229781129 - AluSx SINE Alu -1 311 1 217 260 0 0 chr1 12884085 12884135 -229780218 + MIR SINE MIR 67 116 -92 2170 115 0 13 chr1 12884307 12884620 -229779733 + AluSx SINE Alu 1 309 -3 287 286 0 0 chr1 12884662 12884739 -229779614 + MIR SINE MIR 141 217 -45 2024 125 3 7 chr1 12885728 12886031 -229778322 - AluSx SINE Alu -10 302 1 183 322 186 0 chr1 12886541 12886659 -229777694 + L2 LINE L2 3132 3271 -42 915 84 7 77 chr1 12887223 12887366 -229776987 + AluJo SINE Alu 4 136 -176 1891 155 7 3 chr1 12887869 12888179 -229776174 - AluSx SINE Alu 0 312 2 22 0 0 0 chr1 12888228 12888250 -229776103 + AT_rich Low_complexity Low_complexity 1 22 0 2416 70 0 6 chr1 12888251 12888564 -229775789 + AluY SINE Alu 1 311 0 23 0 0 0 chr1 12889888 12889911 -229774442 + AT_rich Low_complexity Low_complexity 1 23 0 694 135 0 0 chr1 12889947 12890051 -229774302 - AluJb SINE Alu -2 310 207 237 279 81 72 chr1 12890292 12890307 -229774046 + L2 LINE L2 2851 2864 -408 1785 191 75 85 chr1 12890307 12890814 -229773539 - MLT1D LTR MaLR 0 505 4 237 279 81 72 chr1 12890814 12891020 -229773333 + L2 LINE L2 2864 3074 -198 185 170 0 64 chr1 12891036 12891083 -229773270 + L2 LINE L2 3223 3266 -6 240 59 0 0 chr1 12891297 12891331 -229773022 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 215 315 130 0 chr1 12891459 12891567 -229772786 + MIR SINE MIR 3 124 -138 223 178 22 0 chr1 12891758 12891803 -229772550 + GA-rich Low_complexity Low_complexity 3 48 0 1788 141 0 7 chr1 12894934 12895241 -229769112 + AluJo SINE Alu 1 305 0 405 169 0 0 chr1 12895555 12895638 -229768715 + (CA)n Simple_repeat Simple_repeat 2 84 0 303 93 0 0 chr1 12895644 12895687 -229768666 + (TG)n Simple_repeat Simple_repeat 2 44 0 2051 119 0 0 chr1 12895688 12895973 -229768380 - AluSx SINE Alu -27 285 1 189 0 0 0 chr1 12896401 12896422 -229767931 + (ATTAG)n Simple_repeat Simple_repeat 2 22 0 458 229 57 0 chr1 12896457 12896562 -229767791 + L2 LINE L2 3202 3312 -1 852 240 125 49 chr1 12896611 12896721 -229767632 - MLT1G1 LTR MaLR 0 549 449 2026 117 7 7 chr1 12896721 12897021 -229767332 - AluSq SINE Alu -13 300 1 852 240 125 49 chr1 12897021 12897411 -229766942 - MLT1G1 LTR MaLR -100 449 2 1635 221 81 18 chr1 12897591 12898025 -229766328 - MLT1C LTR MaLR -4 463 3 1926 110 0 98 chr1 12899153 12899488 -229764865 + AluJb SINE Alu 1 302 0 1344 245 61 48 chr1 12899677 12900134 -229764219 + MLT1C LTR MaLR 5 467 0 1578 130 0 97 chr1 12900182 12900481 -229763872 + AluJo SINE Alu 6 275 -37 1068 194 134 0 chr1 12900527 12900780 -229763573 - LTR50 LTR ERVL -5 790 504 1053 236 91 86 chr1 12900848 12900891 -229763462 + L2 LINE L2 2709 2750 -563 2002 130 0 0 chr1 12900891 12901197 -229763156 + AluSg SINE Alu 1 306 0 1053 236 91 86 chr1 12901197 12901435 -229762918 + L2 LINE L2 2750 2985 -328 693 113 113 48 chr1 12901435 12901559 -229762794 - FLAM_C SINE Alu -1 132 1 1053 236 91 86 chr1 12901559 12901570 -229762783 + L2 LINE L2 2985 2994 -319 216 0 0 0 chr1 12901570 12901594 -229762759 + (TA)n Simple_repeat Simple_repeat 2 25 0 1669 152 7 14 chr1 12901594 12901883 -229762470 - AluJb SINE Alu -25 287 1 1053 236 91 86 chr1 12901883 12902025 -229762328 + L2 LINE L2 2994 3134 -179 2005 105 31 0 chr1 12902025 12902311 -229762042 - AluSx SINE Alu -17 295 1 1053 236 91 86 chr1 12902311 12902487 -229761866 + L2 LINE L2 3134 3313 0 227 186 0 0 chr1 12903106 12903149 -229761204 + (ATGGTG)n Simple_repeat Simple_repeat 5 47 0 326 250 42 10 chr1 12903153 12903249 -229761104 - LTR33 LTR ERVL -1 520 422 1781 177 3 3 chr1 12903266 12903577 -229760776 + AluJo SINE Alu 1 311 -1 292 250 36 0 chr1 12903812 12903896 -229760457 - LTR33 LTR ERVL -433 88 2 194 243 157 0 chr1 12903925 12903995 -229760358 + MIR SINE MIR 129 209 -53 1984 133 0 9 chr1 12904246 12904561 -229759792 + AluJb SINE Alu 1 312 0 618 269 186 44 chr1 12904858 12904925 -229759428 + MLT1H1 LTR MaLR 75 131 -424 1253 170 170 23 chr1 12904925 12905184 -229759169 - AluJo SINE Alu -5 297 1 2276 82 3 19 chr1 12905194 12905511 -229758842 - AluSp SINE Alu -1 312 1 618 269 186 44 chr1 12905511 12905909 -229758444 + MLT1H1 LTR MaLR 138 555 0 2093 135 21 31 chr1 12905984 12906021 -229758332 + MLT1B LTR MaLR 10 46 -344 1931 160 3 0 chr1 12906021 12906309 -229758044 + AluJo SINE Alu 1 289 -23 2093 135 21 31 chr1 12906309 12906371 -229757982 + MLT1B LTR MaLR 46 107 -283 451 143 26 0 chr1 12906371 12906448 -229757905 + MADE1 DNA Mariner 1 79 -1 2093 135 21 31 chr1 12906448 12906515 -229757838 + MLT1B LTR MaLR 107 173 -217 2473 93 0 0 chr1 12906515 12906818 -229757535 + AluSp SINE Alu 1 301 -12 2093 135 21 31 chr1 12906818 12907032 -229757321 + MLT1B LTR MaLR 173 390 0 2056 114 4 14 chr1 12907136 12907417 -229756936 + AluSx SINE Alu 1 278 -34 530 224 12 73 chr1 12907721 12907886 -229756467 - MLT1K LTR MaLR -2 586 432 203 185 0 19 chr1 12907983 12908037 -229756316 + GA-rich Low_complexity Low_complexity 1 53 0 1380 156 56 106 chr1 12908111 12908442 -229755911 - AluJo SINE Alu 0 312 6 360 0 0 0 chr1 12908580 12908620 -229755733 + (CA)n Simple_repeat Simple_repeat 2 41 0 1991 132 0 40 chr1 12908785 12909088 -229755265 + AluJb SINE Alu 1 291 -21 2344 107 3 0 chr1 12909233 12909541 -229754812 + AluSx SINE Alu 1 309 -3 250 314 65 72 chr1 12909829 12910135 -229754218 + L2 LINE L2 2917 3220 -52 341 242 228 0 chr1 12910162 12910311 -229754042 - MIR SINE MIR -70 192 10 316 278 7 69 chr1 12910423 12910487 -229753866 - MIR SINE MIR -4 258 192 2724 186 4 21 chr1 12910487 12910999 -229753354 - MLT1D LTR MaLR -2 503 1 316 278 7 69 chr1 12910999 12911078 -229753275 - MIR SINE MIR -70 192 124 321 26 0 0 chr1 12911676 12911714 -229752639 + (CA)n Simple_repeat Simple_repeat 1 38 0 291 277 30 102 chr1 12911957 12912123 -229752230 + MIR SINE MIR 13 166 -96 408 40 0 0 chr1 12912489 12912539 -229751814 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 1965 86 47 0 chr1 12912543 12912798 -229751555 - AluY SINE Alu -44 267 1 309 26 0 0 chr1 12913780 12913818 -229750535 + (CAG)n Simple_repeat Simple_repeat 3 40 0 285 99 0 0 chr1 12914834 12914888 -229749465 - MIR SINE MIR -62 146 101 320 251 43 129 chr1 12915959 12916122 -229748231 - MIR SINE MIR -93 169 21 2330 104 0 10 chr1 12916305 12916603 -229747750 + AluSq SINE Alu 1 295 -18 1806 155 9 40 chr1 12916624 12916946 -229747407 + AluJo SINE Alu 1 312 0 469 226 152 56 chr1 12917040 12917117 -229747236 - MIR SINE MIR -3 259 191 2301 113 3 0 chr1 12917117 12917419 -229746934 - AluSx SINE Alu -9 303 1 469 226 152 56 chr1 12917419 12917545 -229746808 - MIR SINE MIR -71 191 39 2106 133 13 28 chr1 12918125 12918442 -229745911 - AluJb SINE Alu 0 312 1 2222 126 0 7 chr1 12918456 12918765 -229745588 - AluSx SINE Alu -3 309 3 2184 79 7 4 chr1 12919023 12919332 -229745021 - AluY SINE Alu 0 314 5 734 234 122 100 chr1 12919694 12919838 -229744515 + LTR16C LTR ERVL 73 212 -279 1903 158 0 38 chr1 12919838 12920155 -229744198 - AluJo SINE Alu -7 305 1 734 234 122 100 chr1 12920155 12920184 -229744169 + LTR16C LTR ERVL 212 239 -252 1490 169 55 22 chr1 12920184 12920490 -229743863 + AluJb SINE Alu 2 316 0 734 234 122 100 chr1 12920490 12920724 -229743629 + LTR16C LTR ERVL 239 491 0 1668 86 0 0 chr1 12920766 12920963 -229743390 - AluSx SINE Alu -115 197 1 1213 238 130 42 chr1 12921012 12921501 -229742852 + MLT1F1 LTR MaLR 12 541 -26 710 178 8 0 chr1 12921520 12921649 -229742704 - FLAM_C SINE Alu -2 131 2 1653 180 46 3 chr1 12921649 12921932 -229742421 - AluJb SINE Alu -17 295 1 452 326 63 9 chr1 12923002 12923223 -229741130 + MIR SINE MIR 16 248 -14 227 232 7 167 chr1 12923276 12923342 -229741011 - MIR SINE MIR -56 206 178 2072 147 0 0 chr1 12923342 12923654 -229740699 - AluSx SINE Alu 0 312 1 227 232 7 167 chr1 12923654 12923736 -229740617 - MIR SINE MIR -84 178 85 2358 82 7 3 chr1 12925759 12926053 -229738300 + AluSc SINE Alu 1 295 -14 2597 47 0 3 chr1 12926053 12926354 -229737999 + AluY SINE Alu 1 300 -11 2027 157 3 0 chr1 12927288 12927582 -229736771 + AluJb SINE Alu 1 295 -17 185 346 0 0 chr1 12927876 12927954 -229736399 + L2 LINE L2 2901 2978 -335 2344 61 7 4 chr1 12929205 12929509 -229734844 + AluY SINE Alu 1 305 0 2132 120 0 0 chr1 12933111 12933421 -229730932 + AluJb SINE Alu 1 310 0 213 339 24 39 chr1 12934464 12934591 -229729762 + MIR SINE MIR 23 147 -115 994 250 105 15 chr1 12934638 12935030 -229729323 + MLT1C LTR MaLR 7 433 -34 260 359 36 10 chr1 12936832 12937024 -229727329 + L2 LINE L2 2893 3089 -183 1996 159 3 10 chr1 12937098 12937412 -229726941 + AluJo SINE Alu 1 312 0 539 237 0 9 chr1 12937484 12937598 -229726755 + MER58B DNA MER1_type 229 341 0 375 203 0 0 chr1 12938557 12938636 -229725717 + (CA)n Simple_repeat Simple_repeat 2 80 0 336 261 193 0 chr1 12940353 12940472 -229723881 + MIR SINE MIR 22 163 -99 402 287 87 13 chr1 12940487 12940637 -229723716 + MIR SINE MIR 76 236 -26 1665 189 61 0 chr1 12940706 12940986 -229723367 + AluJo SINE Alu 1 297 -15 573 165 149 0 chr1 12941097 12941218 -229723135 - MER58C DNA MER1_type 0 215 77 2156 134 7 0 chr1 12941218 12941525 -229722828 + AluSg SINE Alu 1 309 -1 2270 113 10 0 chr1 12941542 12941843 -229722510 + AluSx SINE Alu 1 304 -8 377 69 0 17 chr1 12941850 12941908 -229722445 + (TG)n Simple_repeat Simple_repeat 2 58 0 299 25 25 0 chr1 12941908 12941948 -229722405 + (TA)n Simple_repeat Simple_repeat 1 41 0 1230 191 53 44 chr1 12942043 12942384 -229721969 + MER2 DNA MER2_type 1 344 0 1940 106 109 7 chr1 12944967 12945242 -229719111 + AluSg SINE Alu 1 303 -7 284 182 15 0 chr1 12946538 12946604 -229717749 + L1PB1 LINE L1 6085 6151 0 2191 109 0 32 chr1 12946740 12947052 -229717301 + AluSx SINE Alu 1 302 -10 418 241 51 29 chr1 12947555 12947692 -229716661 + MIR SINE MIR 79 218 -44 493 239 26 26 chr1 12948389 12948593 -229715760 + MER58 DNA MER1_type 6 2414 -6 349 257 29 0 chr1 12949068 12949173 -229715180 - MER5A DNA MER1_type -16 173 66 1893 114 0 69 chr1 12949174 12949464 -229714889 - AluSp SINE Alu -9 304 35 880 178 6 0 chr1 12949494 12949657 -229714696 - L1PA16 LINE L1 -9 6157 5994 23 0 0 0 chr1 12950096 12950119 -229714234 + AT_rich Low_complexity Low_complexity 1 23 0 1734 184 57 0 chr1 12950130 12950413 -229713940 + AluJb SINE Alu 1 299 -13 234 271 10 31 chr1 12950685 12950781 -229713572 - L1ME LINE L1 -266 5904 5811 275 185 217 1 chr1 12950839 12950947 -229713406 - L1ME LINE L1 -330 5791 5663 380 241 36 76 chr1 12950982 12951106 -229713247 - L1ME LINE L1 -755 5391 5278 2136 110 10 3 chr1 12951106 12951397 -229712956 - AluSx SINE Alu -19 293 1 380 241 36 76 chr1 12951397 12951496 -229712857 - L1ME LINE L1 -868 5278 5177 2344 109 6 3 chr1 12951569 12951880 -229712473 - AluSq SINE Alu -1 312 1 2410 83 0 3 chr1 12951887 12952188 -229712165 - AluY SINE Alu -11 300 1 322 264 236 16 chr1 12952195 12952377 -229711976 - L1ME LINE L1 -1013 5133 4912 445 140 330 0 chr1 12952377 12952477 -229711876 - FRAM SINE Alu -22 154 22 453 313 54 19 chr1 12952718 12952977 -229711376 - L1ME LINE L1 -1404 4742 4475 930 113 81 6 chr1 12953486 12953646 -229710707 + MER30 DNA MER1_type 1 172 -58 744 177 0 0 chr1 12953759 12953883 -229710470 - FLAM_A SINE Alu -9 124 1 1109 143 80 27 chr1 12954183 12954407 -229709946 - MER46A DNA MER2_type 0 236 1 894 111 0 15 chr1 12954558 12954693 -229709660 - FLAM_C SINE Alu 0 133 1 924 164 0 20 chr1 12955435 12955587 -229708766 + AluJb SINE Alu 156 304 -8 1302 139 9 0 chr1 12956301 12956517 -229707836 - Tigger1 DNA MER2_type -1 2417 2200 693 150 94 0 chr1 12956513 12956640 -229707713 - Tigger1 DNA MER2_type -2279 139 1 * 210 268 282 28 chr1 12956902 12956978 -229707375 + MER5A DNA MER1_type 4 59 -130 2366 106 3 0 chr1 12956978 12957281 -229707072 + AluSx SINE Alu 1 304 -8 210 268 282 28 chr1 12957281 12957346 -229707007 + MER5A DNA MER1_type 59 181 -8 2527 40 0 3 chr1 12957622 12957921 -229706432 - AluY SINE Alu -13 298 1 207 176 0 0 chr1 12958144 12958178 -229706175 + CT-rich Low_complexity Low_complexity 2 35 0 1876 155 0 19 chr1 12958181 12958498 -229705855 - AluJb SINE Alu 0 312 2 432 130 0 0 chr1 12959294 12959363 -229704990 + (TG)n Simple_repeat Simple_repeat 1 69 0 220 298 11 11 chr1 12959455 12959549 -229704804 + (TG)n Simple_repeat Simple_repeat 1 94 0 454 309 0 6 chr1 12959580 12959761 -229704592 + (TG)n Simple_repeat Simple_repeat 1 180 0 889 238 24 10 chr1 12960041 12960247 -229704106 + MIR SINE MIR 18 226 -36 2069 130 0 0 chr1 12960250 12960557 -229703796 + AluY SINE Alu 1 307 -4 2163 127 0 0 chr1 12960602 12960910 -229703443 + AluSx SINE Alu 1 308 -4 1968 201 34 18 chr1 12961320 12961703 -229702650 - MLT1B LTR MaLR -1 389 1 2150 124 3 0 chr1 12961847 12962146 -229702207 - AluSx SINE Alu -12 300 1 802 269 54 31 chr1 12962146 12962387 -229701966 - MLT1C LTR MaLR 0 467 214 2175 82 16 30 chr1 12962387 12962691 -229701662 - AluSx SINE Alu -12 300 1 802 269 54 31 chr1 12962691 12962799 -229701554 - MLT1C LTR MaLR -253 214 110 5977 47 17 4 chr1 12962833 12963899 -229700454 - SVA Other Other -521 962 57 414 0 0 0 chr1 12963899 12963945 -229700408 + (GGGAGA)n Simple_repeat Simple_repeat 1 46 0 2061 118 30 7 chr1 12963994 12964299 -229700054 + AluSq SINE Alu 1 312 -1 287 177 16 0 chr1 12964299 12964355 -229699998 + MLT1B LTR MaLR 323 379 -11 204 40 0 0 chr1 12964378 12964403 -229699950 + (A)n Simple_repeat Simple_repeat 1 25 0 292 198 135 21 chr1 12964403 12964499 -229699854 - MLT1C LTR MaLR -360 107 1 1857 129 3 14 chr1 12965229 12965561 -229698792 - AluJo SINE Alu 0 329 1 394 241 11 0 chr1 12965563 12965650 -229698703 - MIR SINE MIR -100 162 75 2726 144 56 34 chr1 12965726 12966183 -229698170 + LTR64 LTR ERVK 2 447 -66 2285 87 3 0 chr1 12966183 12966482 -229697871 - AluSp SINE Alu -12 301 2 1626 179 0 29 chr1 12966483 12966796 -229697557 - AluJb SINE Alu -8 304 1 2726 144 56 34 chr1 12966796 12966837 -229697516 + LTR64 LTR ERVK 446 513 0 326 277 0 43 chr1 12967775 12967869 -229696484 - MIR SINE MIR -113 149 60 717 347 126 10 chr1 12968528 12968926 -229695427 - L2 LINE L2 -2 3270 2827 575 259 9 94 chr1 12968936 12969160 -229695193 + L2 LINE L2 3109 3313 0 2371 82 0 3 chr1 12969240 12969545 -229694808 - AluSc SINE Alu -5 304 1 1536 173 87 0 chr1 12969590 12969867 -229694486 + 7SLRNA srpRNA srpRNA 5 305 -15 2068 149 0 0 chr1 12969869 12970177 -229694176 - AluSx SINE Alu -4 308 1 2325 70 0 7 chr1 12970177 12970476 -229693877 - AluY SINE Alu -14 297 1 310 62 0 37 chr1 12970478 12970547 -229693806 - FAM SINE Alu 0 179 125 242 377 74 31 chr1 12970989 12971246 -229693107 - L2 LINE L2 -73 3240 2973 1927 137 31 0 chr1 12971526 12971819 -229692534 + AluSx SINE Alu 1 302 -10 1954 148 0 3 chr1 12972280 12972584 -229691769 - AluSx SINE Alu -9 303 1 2121 105 10 0 chr1 12972597 12972891 -229691462 - AluSx SINE Alu -15 297 1 253 104 149 15 chr1 12973007 12973074 -229691279 + L1M3 LINE L1 5293 5368 -812 565 178 187 0 chr1 12973076 12973183 -229691170 + FLAM_C SINE Alu 1 127 -16 1367 146 97 41 chr1 12973218 12973479 -229690874 + L1M3 LINE L1 5328 5614 -569 1779 157 3 20 chr1 12973479 12973779 -229690574 + AluJb SINE Alu 1 295 -17 1367 146 97 41 chr1 12973779 12973859 -229690494 + L1M3 LINE L1 5614 5688 -495 242 265 76 76 chr1 12975567 12975699 -229688654 - MIR SINE MIR -11 251 120 1053 101 0 0 chr1 12975812 12975951 -229688402 - AluSg/x SINE Alu -16 294 156 604 120 0 0 chr1 12975952 12976044 -229688309 + AluSp/q SINE Alu 215 306 -7 338 259 235 18 chr1 12976065 12976231 -229688122 + MIR SINE MIR 47 248 -14 690 302 146 29 chr1 12977777 12978221 -229686132 - L2 LINE L2 -3 3310 2815 2095 112 10 0 chr1 12978376 12978671 -229685682 - AluSg SINE Alu -12 298 1 1356 309 115 19 chr1 12978690 12979291 -229685062 - L2 LINE L2 -820 2494 1806 2104 127 0 13 chr1 12979291 12979605 -229684748 + AluSx SINE Alu 1 310 -2 1356 309 115 19 chr1 12979605 12979748 -229684605 - L2 LINE L2 -1508 1806 1678 386 326 29 47 chr1 12979752 12979924 -229684429 + MIR SINE MIR 62 230 -32 196 323 32 6 chr1 12979982 12980213 -229684140 - L2 LINE L2 -1672 1642 1370 2058 136 0 0 chr1 12980284 12980578 -229683775 - AluSx SINE Alu -18 294 1 1667 122 49 0 chr1 12980626 12980889 -229683464 + AluSq SINE Alu 24 299 -14 539 317 32 11 chr1 12980892 12981078 -229683275 - L2 LINE L2 -443 2871 2682 2125 162 12 83 chr1 12981078 12981241 -229683112 + L1MB3 LINE L1 5669 5842 -341 2087 131 0 0 chr1 12981241 12981553 -229682800 + AluSx SINE Alu 1 312 0 2125 162 12 83 chr1 12981553 12981890 -229682463 + L1MB3 LINE L1 5842 6131 -52 2220 83 10 0 chr1 12981890 12982178 -229682175 + AluSq SINE Alu 1 291 -22 2125 162 12 83 chr1 12982178 12982208 -229682145 + L1MB3 LINE L1 6131 6162 -21 566 131 0 20 chr1 12982476 12982575 -229681778 + HY1 scRNA scRNA 1 97 -15 2293 99 0 0 chr1 12982583 12982887 -229681466 - AluSg SINE Alu -6 304 1 1651 78 136 39 chr1 12982923 12983228 -229681125 + AluY SINE Alu 1 330 0 2060 133 0 0 chr1 12983241 12983543 -229680810 + AluSx SINE Alu 5 306 -6 278 261 23 23 chr1 12984611 12984699 -229679654 + MIR3 SINE MIR 86 173 -35 570 225 63 23 chr1 12984960 12985150 -229679203 + MIR SINE MIR 16 208 -54 2550 58 0 0 chr1 12985177 12985488 -229678865 - AluY SINE Alu 0 311 1 1121 183 85 64 chr1 12985505 12985626 -229678727 + AluJb SINE Alu 2 119 -183 2129 104 0 7 chr1 12985626 12985923 -229678430 + AluSx SINE Alu 12 306 -6 1121 183 85 64 chr1 12985923 12986096 -229678257 + AluJb SINE Alu 119 302 0 191 214 0 89 chr1 12986119 12986175 -229678178 + MIR SINE MIR 210 260 -2 485 250 78 0 chr1 12986338 12986454 -229677899 - MIR SINE MIR -113 149 25 2199 60 0 98 chr1 12987456 12987792 -229676561 - AluSg SINE Alu -7 303 1 1300 64 0 74 chr1 12987912 12988114 -229676239 + AluSg/x SINE Alu 117 303 -7 1020 160 112 15 chr1 12988117 12988323 -229676030 + AluJb SINE Alu 85 310 -2 382 224 138 0 chr1 12988323 12988439 -229675914 + L1M4 LINE L1 4768 4899 -1247 526 146 0 0 chr1 12988445 12988534 -229675819 + AluS SINE Alu 1 89 -223 344 219 99 53 chr1 12988601 12988752 -229675601 + L1M4 LINE L1 4889 5046 -1100 1128 59 0 0 chr1 12988756 12988891 -229675462 + AluSq/x SINE Alu 1 135 -177 2453 70 3 6 chr1 12988891 12989205 -229675148 + AluSp SINE Alu 1 313 0 2204 93 7 7 chr1 12989386 12989688 -229674665 + AluSx SINE Alu 1 302 -10 654 253 70 0 chr1 12989702 12989888 -229674465 + L1M4 LINE L1 5522 5720 -464 1190 221 167 38 chr1 12989910 12990207 -229674146 - LTR51 LTR ERV1 0 671 414 709 209 0 0 chr1 12990207 12990322 -229674031 + AluJo/FLAM SINE Alu 1 115 -187 2030 153 0 0 chr1 12990323 12990623 -229673730 - AluJb SINE Alu -12 300 1 1190 221 167 38 chr1 12990623 12990679 -229673674 - LTR51 LTR ERV1 -257 414 367 1759 157 35 7 chr1 12990679 12990966 -229673387 + AluJb SINE Alu 3 297 -15 1190 221 167 38 chr1 12990966 12991089 -229673264 - LTR51 LTR ERV1 -304 367 130 1974 105 22 0 chr1 12991127 12991423 -229672930 - AluSg SINE Alu 0 302 1 414 242 40 10 chr1 12991427 12991526 -229672827 + L2 LINE L2 3211 3312 -1 351 305 199 4 chr1 12992135 12992397 -229671956 - L2 LINE L2 -623 2691 2379 2143 102 3 0 chr1 12992507 12992801 -229671552 + AluSg1 SINE Alu 9 303 -6 520 240 114 17 chr1 12995160 12995362 -229668991 - MIR SINE MIR -28 234 13 193 315 67 11 chr1 12995362 12995451 -229668902 + MIR3 SINE MIR 88 181 -27 304 232 160 16 chr1 12995843 12995968 -229668385 - MIR3 SINE MIR -46 162 20 224 265 0 0 chr1 12996005 12996054 -229668299 + MIR SINE MIR 43 91 -117 189 300 53 86 chr1 12996102 12996219 -229668134 + MIR SINE MIR 6 117 -93 2259 107 0 0 chr1 12996430 12996729 -229667624 - AluSq SINE Alu -14 299 1 228 357 31 73 chr1 12997216 12997353 -229667000 + MIR3 SINE MIR 13 135 -127 9977 44 21 88 chr1 12997353 12998834 -229665519 + SVA Other Other 5 1385 -1 228 357 31 73 chr1 12998834 12998932 -229665421 + MIR3 SINE MIR 135 236 -26 1922 147 3 7 chr1 13001218 13001517 -229662836 + AluSx SINE Alu 1 298 -14 395 315 118 41 chr1 13002868 13002920 -229661433 + L1ME2 LINE L1 5371 5418 -746 2328 88 3 0 chr1 13002920 13003216 -229661137 - AluSp SINE Alu -14 299 3 395 315 118 41 chr1 13003216 13003699 -229660654 + L1ME2 LINE L1 5418 5947 -217 1801 170 20 0 chr1 13003895 13004189 -229660164 - AluJo SINE Alu -12 300 1 2033 94 35 7 chr1 13005288 13005574 -229658779 + AluSx SINE Alu 1 294 -18 197 297 141 0 chr1 13005876 13005940 -229658413 + MIR3 SINE MIR 130 202 -6 216 337 105 22 chr1 13005994 13006114 -229658239 - MIR SINE MIR -66 196 55 2309 79 10 0 chr1 13006114 13006406 -229657947 + AluSq SINE Alu 4 298 -15 216 337 105 22 chr1 13006406 13006466 -229657887 - MIR SINE MIR -207 55 1 2307 81 0 10 chr1 13006480 13006788 -229657565 - AluY SINE Alu -6 305 1 345 219 37 0 chr1 13006793 13006875 -229657478 - FLAM_A SINE Alu -6 127 43 1055 106 0 0 chr1 13006943 13007084 -229657269 + AluJb SINE Alu 1 141 -171 234 0 0 0 chr1 13008025 13008051 -229656302 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2094 100 0 7 chr1 13008053 13008334 -229656019 - AluSg SINE Alu -30 280 2 2346 86 0 0 chr1 13008419 13008723 -229655630 + AluSg SINE Alu 1 304 -6 2302 95 0 3 chr1 13009540 13009845 -229654508 - AluSx SINE Alu -8 304 1 2275 111 0 0 chr1 13010944 13011250 -229653103 - AluSx SINE Alu -6 306 1 1512 148 9 85 chr1 13011299 13011635 -229652718 - AluJo SINE Alu 0 312 5 2326 80 0 16 chr1 13011982 13012294 -229652059 - AluY SINE Alu -4 307 1 588 188 7 112 chr1 13012740 13012839 -229651514 + MER31-int LTR ERV1 1283 1391 -3545 2294 68 7 13 chr1 13012839 13013146 -229651207 - AluY SINE Alu -5 306 2 588 188 7 112 chr1 13013146 13013342 -229651011 + MER31-int LTR ERV1 1391 1686 -3250 1409 143 64 19 chr1 13013355 13013620 -229650733 + L1MB2 LINE L1 5894 6170 -1 795 162 156 6 chr1 13013621 13013788 -229650565 + AluJb SINE Alu 120 311 -1 709 313 52 4 chr1 13014208 13014441 -229649912 + MIR SINE MIR 9 252 -10 220 232 0 36 chr1 13014455 13014511 -229649842 - L2 LINE L2 -1 3312 3259 372 203 14 0 chr1 13014567 13014636 -229649717 - MIR SINE MIR -180 82 13 2774 10 0 0 chr1 13014648 13014958 -229649395 - AluYa5 SINE Alu -1 310 1 207 291 51 13 chr1 13015144 13015223 -229649130 + L2 LINE L2 2986 3067 -246 196 270 79 11 chr1 13016110 13016199 -229648154 + L2 LINE L2 3158 3252 -20 227 302 207 24 chr1 13016889 13017058 -229647295 + MIR SINE MIR 21 220 -42 2042 137 0 3 chr1 13017599 13017898 -229646455 + AluSx SINE Alu 1 298 -14 848 175 28 0 chr1 13017905 13018048 -229646305 + FRAM SINE Alu 5 151 -15 791 158 23 23 chr1 13018062 13018195 -229646158 + AluJo/FLAM SINE Alu 1 133 -169 2023 111 3 10 chr1 13018198 13018491 -229645862 + AluSg SINE Alu 1 292 -14 225 0 0 0 chr1 13018491 13018516 -229645837 + (CA)n Simple_repeat Simple_repeat 2 26 0 1655 166 6 52 chr1 13018624 13018949 -229645404 - AluJo SINE Alu -2 310 1 2175 113 0 0 chr1 13018953 13019253 -229645100 - AluSx SINE Alu -12 300 1 1961 124 9 22 chr1 13019258 13019573 -229644780 - AluSx SINE Alu -1 311 1 2047 115 40 0 chr1 13019724 13020020 -229644333 + AluSg SINE Alu 1 308 -2 2175 115 0 6 chr1 13020833 13021145 -229643208 + AluSx SINE Alu 1 310 -2 262 368 18 9 chr1 13021182 13021296 -229643057 + MIR SINE MIR 26 140 -122 3072 157 74 43 chr1 13021321 13022105 -229642248 - MER21A LTR ERV1 -10 921 3 401 289 44 0 chr1 13022687 13022822 -229641531 + L2 LINE L2 2920 3060 -212 269 279 32 82 chr1 13023191 13023230 -229641123 - MER103 DNA DNA -1 165 126 1988 88 3 54 chr1 13023230 13023562 -229640791 + AluY SINE Alu 1 317 0 269 279 32 82 chr1 13023562 13023679 -229640674 - MER103 DNA DNA -40 126 16 1805 73 28 0 chr1 13025131 13025378 -229638975 - AluSx SINE Alu -58 254 1 272 287 172 0 chr1 13025597 13025719 -229638634 - L2 LINE L2 -4 3268 3126 278 225 99 0 chr1 13026946 13027017 -229637336 + MER33 DNA MER1_type 10 87 -237 1741 94 112 0 chr1 13027072 13027339 -229637014 + AluSg SINE Alu 1 297 -13 1167 142 44 76 chr1 13027343 13027618 -229636735 - AluJo SINE Alu -25 287 22 671 147 80 0 chr1 13027641 13027791 -229636562 + MER33 DNA MER1_type 180 341 -22 2138 94 26 19 chr1 13028201 13028508 -229635845 - AluSx SINE Alu -3 309 1 1881 166 0 3 chr1 13028918 13029231 -229635122 - AluSx SINE Alu 0 312 1 1868 146 7 7 chr1 13029239 13029541 -229634812 - AluSx SINE Alu -10 302 1 2242 96 0 0 chr1 13029627 13029928 -229634425 + AluSx SINE Alu 2 302 -10 2059 114 13 7 chr1 13030122 13030421 -229633932 - AluSx SINE Alu -11 301 1 1081 114 40 28 chr1 13030448 13030624 -229633729 + AluSq SINE Alu 1 178 -135 2088 130 0 0 chr1 13030675 13030982 -229633371 + AluSx SINE Alu 1 307 -5 1957 100 50 0 chr1 13032118 13032399 -229631954 + AluSx SINE Alu 1 295 -17 353 262 220 6 chr1 13032410 13032578 -229631775 + MIR SINE MIR 13 216 -46 619 207 186 0 chr1 13032608 13032753 -229631600 - MER20 DNA MER1_type -47 172 1 1393 124 14 23 chr1 13032803 13033020 -229631333 + AluJb SINE Alu 85 299 -13 2016 144 0 0 chr1 13033084 13033383 -229630970 - AluSx SINE Alu -13 299 1 181 286 32 16 chr1 13033861 13033924 -229630429 + L2 LINE L2 3240 3303 -10 431 166 16 53 chr1 13033938 13034049 -229630304 + GA-rich Low_complexity Low_complexity 1 104 -76 2000 122 33 3 chr1 13034049 13034352 -229630001 + AluSq SINE Alu 1 312 -1 431 166 16 53 chr1 13034352 13034427 -229629926 + GA-rich Low_complexity Low_complexity 104 180 0 1420 97 0 0 chr1 13034933 13035119 -229629234 + AluSq SINE Alu 1 186 -127 380 250 8 58 chr1 13035297 13035611 -229628742 + C-rich Low_complexity Low_complexity 1 298 0 352 261 11 44 chr1 13035530 13035710 -229628643 + (CACCC)n Simple_repeat Simple_repeat 3 176 0 * 891 193 126 22 chr1 13035955 13036159 -229628194 + MLT1E1 LTR MaLR 6 187 -467 1763 161 0 27 chr1 13036159 13036322 -229628031 - AluJb SINE Alu -21 291 138 2179 94 3 31 chr1 13036322 13036641 -229627712 - AluSx SINE Alu -2 310 1 1763 161 0 27 chr1 13036641 13036776 -229627577 - AluJb SINE Alu -174 138 1 891 193 126 22 chr1 13036776 13037036 -229627317 + MLT1E1 LTR MaLR 187 648 -6 1808 90 143 4 chr1 13037312 13037578 -229626775 + AluSq SINE Alu 1 303 0 817 180 0 90 chr1 13037583 13037761 -229626592 + FRAM SINE Alu 5 166 0 2214 84 7 10 chr1 13037786 13038094 -229626259 + AluSx SINE Alu 2 308 -4 31 0 0 0 chr1 13038307 13038338 -229626015 + AT_rich Low_complexity Low_complexity 1 31 0 2027 138 0 0 chr1 13038347 13038645 -229625708 + AluSx SINE Alu 1 298 -14 1180 138 0 0 chr1 13038671 13038835 -229625518 + AluSg/x SINE Alu 119 285 -25 234 0 0 0 chr1 13038835 13038861 -229625492 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1180 138 0 0 chr1 13038861 13038877 -229625476 + AluSg/x SINE Alu 284 299 -11 274 117 0 117 chr1 13038886 13038946 -229625407 + FLAM SINE Alu 77 129 -4 242 123 18 0 chr1 13038946 13039003 -229625350 + (TA)n Simple_repeat Simple_repeat 1 58 0 180 116 18 107 chr1 13040066 13040178 -229624175 + C-rich Low_complexity Low_complexity 1 102 0 243 321 28 0 chr1 13040480 13040589 -229623764 + (TG)n Simple_repeat Simple_repeat 1 112 0 286 341 63 8 chr1 13040630 13040809 -229623544 - MIR SINE MIR -57 205 22 196 279 87 19 chr1 13041218 13041322 -229623031 + L2 LINE L2 3142 3252 -20 190 327 0 0 chr1 13042136 13042191 -229622162 - L3b LINE CR1 -195 1388 1334 950 144 0 6 chr1 13042711 13042892 -229621461 + (GGA)n Simple_repeat Simple_repeat 1 180 0 323 217 14 0 chr1 13043344 13043413 -229620940 + L1ME LINE L1 5537 5606 -515 343 216 27 14 chr1 13043438 13043512 -229620841 + MER58 DNA MER1_type 1 75 -140 691 198 116 17 chr1 13043516 13043530 -229620823 - AluJb SINE Alu -1 311 300 2344 96 0 0 chr1 13043530 13043842 -229620511 - AluSx SINE Alu 0 312 1 691 198 116 17 chr1 13043842 13043999 -229620354 - AluJb SINE Alu -12 300 123 2442 77 0 0 chr1 13044025 13044336 -229620017 + AluY SINE Alu 1 311 0 303 228 62 53 chr1 13044336 13044373 -229619980 + MER58 DNA MER1_type 109 144 -2276 1818 138 0 66 chr1 13044373 13044514 -229619839 + AluJo SINE Alu 3 152 -160 1942 121 0 0 chr1 13044514 13044816 -229619537 + AluSx SINE Alu 3 304 0 1818 138 0 66 chr1 13044816 13044993 -229619360 + AluJo SINE Alu 152 301 -11 303 228 62 53 chr1 13044993 13045149 -229619204 + MER58 DNA MER1_type 144 2420 0 1719 177 3 3 chr1 13045189 13045499 -229618854 - AluJo SINE Alu -2 310 1 22 0 0 0 chr1 13045499 13045521 -229618832 + AT_rich Low_complexity Low_complexity 1 22 0 243 197 42 28 chr1 13045666 13045737 -229618616 - MIR SINE MIR -111 151 80 219 214 18 0 chr1 13046080 13046136 -229618217 + L2 LINE L2 2917 2973 -299 208 309 62 12 chr1 13046222 13046303 -229618050 - MER5B DNA MER1_type -65 113 29 1602 93 0 13 chr1 13046331 13046556 -229617797 + AluSg1 SINE Alu 1 222 -87 828 122 0 0 chr1 13046556 13046679 -229617674 + AluSg/x SINE Alu 183 305 -4 2203 101 3 0 chr1 13046685 13046991 -229617362 + AluY SINE Alu 1 307 -4 1291 109 0 0 chr1 13046991 13047165 -229617188 + AluSg/x SINE Alu 134 307 -5 820 247 22 54 chr1 13047254 13047355 -229616998 - MIR SINE MIR -17 245 142 2270 96 0 0 chr1 13047355 13047678 -229616675 - AluSq SINE Alu 0 313 1 820 247 22 54 chr1 13047678 13047799 -229616554 - MIR SINE MIR -120 142 30 348 271 10 31 chr1 13048969 13049065 -229615288 - MER5A DNA MER1_type -39 150 57 597 260 103 0 chr1 13049724 13049928 -229614425 + MIR SINE MIR 21 245 -17 2069 106 0 10 chr1 13050184 13050477 -229613876 - AluSx SINE Alu 0 312 23 850 120 0 23 chr1 13050539 13050672 -229613681 + AluJo/FLAM SINE Alu 1 130 -182 2331 94 0 7 chr1 13050675 13050984 -229613369 + AluSx SINE Alu 1 307 -5 287 263 30 40 chr1 13051141 13051240 -229613113 - MIR3 SINE MIR -48 160 63 1863 123 0 52 chr1 13052103 13052413 -229611940 - AluSq SINE Alu -19 294 1 752 225 55 60 chr1 13052424 13052435 -229611918 - MIR SINE MIR -44 218 208 1825 159 7 3 chr1 13052435 13052731 -229611622 + AluJb SINE Alu 1 297 -15 752 225 55 60 chr1 13052731 13052798 -229611555 - MIR SINE MIR -54 208 142 2193 99 3 0 chr1 13052798 13053090 -229611263 - AluSq SINE Alu -20 293 1 752 225 55 60 chr1 13053090 13053228 -229611125 - MIR SINE MIR -120 142 2 2022 129 0 0 chr1 13053245 13053540 -229610813 + AluSx SINE Alu 1 295 -17 957 210 52 4 chr1 13053540 13053769 -229610584 + MLT1A1 LTR MaLR 126 365 0 192 230 46 58 chr1 13054320 13054407 -229609946 - MIR SINE MIR -61 147 62 2371 65 0 0 chr1 13054659 13054953 -229609400 - AluY SINE Alu -7 304 11 213 19 111 0 chr1 13054954 13055008 -229609345 + (TA)n Simple_repeat Simple_repeat 2 61 0 46 19 0 0 chr1 13055013 13055066 -229609287 + AT_rich Low_complexity Low_complexity 1 53 0 1868 104 0 0 chr1 13055066 13055317 -229609036 - AluSx SINE Alu -61 251 1 537 302 101 39 chr1 13055331 13055507 -229608846 - L2 LINE L2 -610 2704 2540 1936 139 0 10 chr1 13055507 13055801 -229608552 + AluSx SINE Alu 1 291 -21 537 302 101 39 chr1 13055801 13056011 -229608342 - L2 LINE L2 -774 2540 2294 2040 138 0 0 chr1 13056881 13057185 -229607168 + AluSx SINE Alu 1 304 -8 612 287 108 74 chr1 13057270 13057650 -229606703 + MLT1K LTR MaLR 145 537 -51 339 296 20 10 chr1 13057650 13057748 -229606605 + L2 LINE L2 3150 3248 -24 2042 113 23 7 chr1 13057842 13058142 -229606211 - AluSx SINE Alu -1 311 7 224 281 31 0 chr1 13058772 13058836 -229605517 - MIR3 SINE MIR -135 73 8 2199 127 76 95 chr1 13058840 13059018 -229605335 + MSTB LTR MaLR 2 182 -244 2014 131 14 0 chr1 13059018 13059309 -229605044 - AluSx SINE Alu -17 295 1 2199 127 76 95 chr1 13059309 13059334 -229605019 + MSTB LTR MaLR 182 206 -220 1718 129 111 7 chr1 13059334 13059613 -229604740 - AluSg1 SINE Alu 0 309 2 2199 127 76 95 chr1 13059613 13059841 -229604512 + MSTB LTR MaLR 206 426 0 315 318 37 32 chr1 13059998 13060187 -229604166 - MER117 DNA MER1_type 0 197 8 888 270 14 0 chr1 13060364 13060579 -229603774 + MIR SINE MIR 20 237 -25 2277 115 0 0 chr1 13060592 13060904 -229603449 + AluSx SINE Alu 1 312 0 1612 162 22 50 chr1 13061142 13061463 -229602890 - AluJb SINE Alu 0 312 1 303 49 0 0 chr1 13062137 13062178 -229602175 + (TG)n Simple_repeat Simple_repeat 2 42 0 403 274 256 42 chr1 13062310 13062356 -229601997 - MIR SINE MIR 0 262 227 2129 105 3 3 chr1 13062356 13062650 -229601703 - AluSx SINE Alu -18 294 1 403 274 256 42 chr1 13062650 13062818 -229601535 - MIR SINE MIR -35 227 2 2230 119 0 0 chr1 13063004 13063314 -229601039 + AluSq SINE Alu 1 310 -3 2126 120 0 13 chr1 13063313 13063621 -229600732 + AluSg1 SINE Alu 1 304 -5 * 344 224 199 25 chr1 13063706 13063867 -229600486 - MER5A DNA MER1_type 0 189 1 2043 121 3 33 chr1 13064308 13064615 -229599738 + AluSq SINE Alu 1 298 -15 1732 102 3 129 chr1 13064615 13064819 -229599534 + AluSx SINE Alu 1 150 -162 2071 108 3 14 chr1 13064819 13065133 -229599220 + AluSq SINE Alu 3 313 0 1732 102 3 129 chr1 13065133 13065261 -229599092 + AluSx SINE Alu 150 292 -20 431 137 0 0 chr1 13065295 13065368 -229598985 + Alu SINE Alu 237 309 -2 531 255 12 69 chr1 13065416 13065617 -229598736 - MIR SINE MIR -34 228 36 694 180 7 43 chr1 13066014 13066153 -229598200 + MIR SINE MIR 92 225 -37 1463 178 0 0 chr1 13066282 13066524 -229597829 + AluJo SINE Alu 5 246 -66 805 169 15 7 chr1 13066537 13066673 -229597680 + AluJo SINE Alu 1 137 -175 2155 109 17 0 chr1 13066699 13066993 -229597360 + AluSq SINE Alu 7 305 -8 243 359 16 31 chr1 13068217 13068345 -229596008 + MIR SINE MIR 46 171 -91 2259 110 7 0 chr1 13068350 13068658 -229595695 + AluSx SINE Alu 1 310 -2 224 420 35 0 chr1 13069230 13069373 -229594980 - MIR SINE MIR -14 248 101 2318 109 0 0 chr1 13069453 13069766 -229594587 + AluSq SINE Alu 1 313 0 2004 128 0 0 chr1 13069778 13070092 -229594261 + AluSx SINE Alu 1 314 0 366 232 125 9 chr1 13070350 13070462 -229593891 + MIR SINE MIR 16 140 -68 1473 136 0 0 chr1 13070472 13070678 -229593675 + AluSx SINE Alu 1 206 -106 2249 101 0 0 chr1 13070678 13070975 -229593378 + AluSg SINE Alu 1 297 -13 667 159 8 32 chr1 13070975 13071116 -229593237 + AluSg/x SINE Alu 190 309 0 488 239 147 73 chr1 13071271 13071489 -229592864 + MIR SINE MIR 29 262 0 302 283 151 0 chr1 13071515 13071667 -229592686 - MIR3 SINE MIR -21 187 13 314 311 98 0 chr1 13072199 13072331 -229592022 + MIR SINE MIR 117 261 -1 1118 153 0 0 chr1 13072540 13072717 -229591636 - AluJb SINE Alu -2 310 134 2211 92 7 0 chr1 13072717 13073012 -229591341 - AluSp SINE Alu -12 301 5 2341 88 3 0 chr1 13073197 13073502 -229590851 + AluSg SINE Alu 1 306 -4 2005 154 0 0 chr1 13073708 13074020 -229590333 + AluJb SINE Alu 1 312 0 2242 101 0 0 chr1 13074127 13074424 -229589929 - AluSg1 SINE Alu -12 297 1 226 239 0 43 chr1 13074429 13074521 -229589832 + HAL1b LINE L1 1179 1266 -82 27 62 0 0 chr1 13074569 13074617 -229589736 + AT_rich Low_complexity Low_complexity 1 48 0 2025 125 3 0 chr1 13074642 13074931 -229589422 + AluSp SINE Alu 1 290 -23 774 163 0 44 chr1 13074990 13075125 -229589228 + AluJo SINE Alu 6 134 -178 272 336 18 18 chr1 13075194 13075307 -229589046 - MIR SINE MIR -63 145 33 377 328 90 50 chr1 13075451 13075478 -229588875 - MIR SINE MIR -6 256 232 1762 152 10 30 chr1 13075478 13075780 -229588573 - AluJb SINE Alu -16 296 1 377 328 90 50 chr1 13075780 13075953 -229588400 - MIR SINE MIR -30 232 48 1690 161 19 63 chr1 13076034 13076351 -229588002 + AluJb SINE Alu 1 303 -9 23 54 0 0 chr1 13076838 13076875 -229587478 + AT_rich Low_complexity Low_complexity 1 37 0 431 97 0 0 chr1 13076879 13076941 -229587412 - Alu SINE Alu -8 302 241 2335 75 3 3 chr1 13076948 13077243 -229587110 + AluSp SINE Alu 1 295 -18 572 92 0 0 chr1 13077244 13077331 -229587022 + L1PA16 LINE L1 6079 6165 -1 1676 167 0 42 chr1 13077344 13077654 -229586699 + AluJb SINE Alu 7 304 0 2061 107 11 0 chr1 13077655 13077956 -229586397 + AluSq SINE Alu 1 304 0 1949 142 23 0 chr1 13077958 13078260 -229586093 + AluSx SINE Alu 4 312 0 2133 91 0 70 chr1 13078743 13078935 -229585418 - AluSx SINE Alu -6 306 145 2503 64 0 0 chr1 13078935 13079246 -229585107 - AluY SINE Alu 0 311 1 2133 91 0 70 chr1 13079246 13079382 -229584971 - AluSx SINE Alu -167 145 1 189 203 14 29 chr1 13079390 13079459 -229584894 + CT-rich Low_complexity Low_complexity 2 69 0 2371 65 0 26 chr1 13079508 13079818 -229584535 - AluSg SINE Alu -7 303 2 209 300 17 0 chr1 13080212 13080332 -229584021 + (CGG)n Simple_repeat Simple_repeat 3 124 0 27 0 0 0 chr1 13080475 13080502 -229583851 + GC_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr1 13080849 13080879 -229583474 + GC_rich Low_complexity Low_complexity 1 30 0 311 354 140 6 chr1 13081468 13081646 -229582707 + MIR SINE MIR 6 207 -55 351 218 102 82 chr1 13082028 13082175 -229582178 - L2 LINE L2 -5 3308 3159 1027 88 15 0 chr1 13082211 13082348 -229582005 + AluSx SINE Alu 1 139 -174 579 57 0 0 chr1 13082348 13082418 -229581935 - Alu SINE Alu -240 71 2 940 173 6 0 chr1 13082560 13082722 -229581631 + AluSx SINE Alu 134 296 -16 1160 158 0 0 chr1 13084246 13084423 -229579930 + FRAM SINE Alu 1 176 0 198 0 0 0 chr1 13084426 13084448 -229579905 + (A)n Simple_repeat Simple_repeat 1 22 0 1204 379 0 45 chr1 13084453 13084764 -229579589 + AluJo SINE Alu 1 297 -15 3050 151 125 9 chr1 13084865 13085442 -229578911 - LTR48B LTR ERV1 0 644 1 486 33 0 0 chr1 13085444 13085504 -229578849 + (CA)n Simple_repeat Simple_repeat 2 61 0 2386 184 50 10 chr1 13085531 13086031 -229578322 + MER21B LTR ERV1 89 608 -255 815 161 0 0 chr1 13086036 13086166 -229578187 - FRAM SINE Alu -19 157 28 994 161 30 94 chr1 13086337 13086479 -229577874 + L1MB8 LINE L1 5928 6047 -131 2323 81 3 0 chr1 13086479 13086776 -229577577 + AluSp SINE Alu 1 298 -15 994 161 30 94 chr1 13086776 13086900 -229577453 + L1MB8 LINE L1 6047 6177 -1 1615 163 17 7 chr1 13086942 13087231 -229577122 - AluJo SINE Alu -20 292 1 799 163 7 35 chr1 13087231 13087372 -229576981 - AluJo SINE Alu -170 142 6 2038 142 0 16 chr1 13088403 13088714 -229575639 + AluSx SINE Alu 1 306 -6 2122 117 9 19 chr1 13089002 13089318 -229575035 + AluSq SINE Alu 1 313 0 754 223 94 30 chr1 13089370 13089765 -229574588 + L1MC5 LINE L1 7369 7788 -173 662 201 15 0 chr1 13089767 13089890 -229574463 + AluJo SINE Alu 1 128 -184 513 32 0 0 chr1 13089890 13089953 -229574400 + (CA)n Simple_repeat Simple_repeat 2 64 0 420 342 26 26 chr1 13089963 13090118 -229574235 + L1MC5 LINE L1 7775 7929 -32 419 360 82 17 chr1 13090201 13090434 -229573919 + L1ME4a LINE L1 5815 6062 -59 213 353 86 9 chr1 13092892 13093008 -229571345 - L2 LINE L2 -50 3222 3098 2241 95 0 0 chr1 13093684 13093980 -229570373 - AluSq SINE Alu 0 313 18 744 117 0 0 chr1 13093980 13094083 -229570270 - FLAM_A SINE Alu -11 131 29 185 276 0 35 chr1 13096109 13096167 -229568186 - L2 LINE L2 -17 3255 3200 2229 109 7 0 chr1 13096215 13096518 -229567835 - AluSx SINE Alu -6 306 2 551 246 15 8 chr1 13096531 13096665 -229567688 - MIR SINE MIR -94 168 34 2203 107 0 0 chr1 13098233 13098532 -229565821 + AluSx SINE Alu 3 301 -11 2270 93 0 10 chr1 13099121 13099434 -229564919 + AluSg SINE Alu 1 310 0 652 157 165 0 chr1 13099767 13099882 -229564471 + AluJo SINE Alu 2 135 -177 375 365 138 24 chr1 13100325 13100550 -229563803 - L3 LINE CR1 -7 1570 1372 1699 156 3 62 chr1 13100550 13100870 -229563483 + AluJo SINE Alu 1 301 -11 375 365 138 24 chr1 13100870 13100937 -229563416 - L3 LINE CR1 -205 1372 1314 2246 107 10 0 chr1 13100937 13101246 -229563107 - AluSq SINE Alu -1 312 1 375 365 138 24 chr1 13101246 13101459 -229562894 - L3 LINE CR1 -263 1314 1006 380 313 22 44 chr1 13102239 13102421 -229561932 - MER5B DNA MER1_type 0 178 1 633 186 119 0 chr1 13102529 13102647 -229561706 + FLAM_A SINE Alu 1 132 -1 1936 128 0 0 chr1 13104432 13104713 -229559640 + AluJb SINE Alu 31 311 -1 2319 101 0 0 chr1 13104717 13105024 -229559329 + AluSg SINE Alu 1 307 -3 311 313 163 14 chr1 13105037 13105184 -229559169 + MIR SINE MIR 94 262 0 274 346 67 0 chr1 13105250 13105354 -229558999 + MIR SINE MIR 25 135 -127 537 272 106 56 chr1 13105927 13106247 -229558106 - L2 LINE L2 -5 3267 2932 236 339 81 44 chr1 13106273 13106571 -229557782 - L2 LINE L2 -456 2858 2550 234 156 0 0 chr1 13107220 13107265 -229557088 + (TG)n Simple_repeat Simple_repeat 2 46 0 286 264 28 14 chr1 13109634 13109706 -229554647 - MER5A DNA MER1_type -32 157 85 1830 149 13 23 chr1 13111422 13111731 -229552622 + AluJo SINE Alu 4 309 -3 383 271 84 19 chr1 13112012 13112119 -229552234 + L1ME4a LINE L1 6008 6121 0 2146 110 7 13 chr1 13112126 13112436 -229551917 + AluSx SINE Alu 1 308 -4 2138 121 10 0 chr1 13114004 13114302 -229550051 + AluSq SINE Alu 1 301 -12 2426 71 3 0 chr1 13114602 13114910 -229549443 + AluSp SINE Alu 1 309 -4 2164 110 10 3 chr1 13115202 13115510 -229548843 - AluSx SINE Alu -2 310 1 390 261 62 71 chr1 13116154 13116217 -229548136 + Charlie8 DNA MER1_type 70 132 -209 2347 82 0 0 chr1 13116217 13116520 -229547833 - AluY SINE Alu -8 303 1 390 261 62 71 chr1 13116520 13116667 -229547686 + Charlie8 DNA MER1_type 132 278 -63 388 283 43 7 chr1 13116699 13116837 -229547516 + MLT1E LTR MaLR 20 162 -431 2226 90 20 0 chr1 13116851 13117151 -229547202 + AluSx SINE Alu 1 306 -6 549 252 52 7 chr1 13117516 13117674 -229546679 - MIR SINE MIR -62 146 9 807 205 41 0 chr1 13117903 13118074 -229546279 - MLT1F1 LTR MaLR 0 567 390 226 339 71 9 chr1 13118490 13118602 -229545751 - MIR SINE MIR -139 123 5 * 690 284 127 4 chr1 13118599 13118828 -229545525 - MIR SINE MIR -1 261 5 238 315 0 0 chr1 13119249 13119338 -229545015 + C-rich Low_complexity Low_complexity 3 91 0 457 247 31 86 chr1 13119654 13119816 -229544537 - MER5B DNA MER1_type -17 161 9 1273 110 0 0 chr1 13119832 13120005 -229544348 - AluSg/x SINE Alu -6 306 134 198 231 141 13 chr1 13120163 13120241 -229544112 - MIR SINE MIR -63 145 58 528 210 30 0 chr1 13170482 13170582 -229493771 + AluSg/x SINE Alu 193 295 -15 469 252 102 7 chr1 13170598 13170745 -229493608 + MIR SINE MIR 70 230 -32 340 240 13 0 chr1 13171656 13171731 -229492622 - MIR3 SINE MIR -21 187 112 1681 148 0 74 chr1 13172235 13172406 -229491947 - AluJo SINE Alu -12 300 163 2053 102 51 0 chr1 13172406 13172699 -229491654 - AluSg1 SINE Alu -1 308 1 1681 148 0 74 chr1 13172699 13172851 -229491502 - AluJo SINE Alu -149 163 1 291 248 205 0 chr1 13173110 13173227 -229491126 + MIR SINE MIR 2 142 -120 2305 86 7 0 chr1 13173246 13173538 -229490815 - AluSp SINE Alu -17 296 3 2032 114 0 13 chr1 13173542 13173841 -229490512 - AluSq SINE Alu -18 295 1 1006 59 7 30 chr1 13175317 13175452 -229488901 - AluSq/x SINE Alu -180 132 1 2197 79 3 30 chr1 13175522 13175825 -229488528 - AluY SINE Alu -16 295 1 273 308 7 35 chr1 13175825 13175948 -229488405 - L1MC4 LINE L1 -9 8033 7908 1885 157 0 10 chr1 13175948 13176248 -229488105 - AluJb SINE Alu -15 297 1 2290 100 0 0 chr1 13176252 13176553 -229487800 - AluSg SINE Alu -9 301 1 273 308 7 35 chr1 13176553 13176567 -229487786 - L1MC4 LINE L1 -137 7905 7895 220 278 222 0 chr1 13176845 13176971 -229487382 + MIR3 SINE MIR 34 187 -21 212 135 0 0 chr1 13177509 13177546 -229486807 - L2 LINE L2 -217 3055 3019 642 358 10 0 chr1 13177669 13177870 -229486483 - MIR SINE MIR -12 250 48 1824 122 4 0 chr1 13177873 13178128 -229486225 - AluSx SINE Alu -56 256 1 186 316 42 21 chr1 13178130 13178225 -229486128 - MIR3 SINE MIR -111 97 1 522 262 110 31 chr1 13178903 13179094 -229485259 - MIR SINE MIR -45 217 12 225 224 0 0 chr1 13179160 13179209 -229485144 + L3b LINE CR1 1338 1386 -197 2200 70 42 0 chr1 13179239 13179526 -229484827 - AluY SINE Alu -12 299 1 1035 166 46 37 chr1 13180284 13180501 -229483852 + MER20 DNA MER1_type 1 219 0 483 292 106 6 chr1 13180681 13180842 -229483511 - MIR SINE MIR -18 244 68 398 292 94 64 chr1 13182836 13183361 -229480992 + L2 LINE L2 2712 3245 -27 2127 107 20 0 chr1 13183415 13183713 -229480640 + AluSx SINE Alu 1 304 -8 229 243 12 18 chr1 13183752 13183921 -229480432 + (TG)n Simple_repeat Simple_repeat 1 168 0 429 221 10 10 chr1 13183975 13184271 -229480082 + (TG)n Simple_repeat Simple_repeat 1 296 0 218 261 9 0 chr1 13184290 13184401 -229479952 + (TG)n Simple_repeat Simple_repeat 1 112 0 257 305 25 70 chr1 13185017 13185185 -229479168 - MIR SINE MIR -67 141 32 28 0 0 0 chr1 13185875 13185903 -229478450 + AT_rich Low_complexity Low_complexity 1 28 0 2086 114 24 0 chr1 13186202 13186499 -229477854 - AluSg SINE Alu -4 306 3 239 0 0 31 chr1 13186499 13186531 -229477822 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2117 100 4 0 chr1 13186531 13186812 -229477541 - AluSx SINE Alu -30 282 1 688 152 0 56 chr1 13186855 13186980 -229477373 + FLAM_A SINE Alu 25 142 0 1567 172 10 17 chr1 13187588 13187885 -229476468 - AluJb SINE Alu -16 296 2 193 333 0 0 chr1 13188970 13189030 -229475323 - L2 LINE L2 -81 3191 3132 331 191 16 0 chr1 13189302 13189365 -229474988 + MIR SINE MIR 79 142 -120 1191 143 0 0 chr1 13189395 13189570 -229474783 - AluSg/x SINE Alu -3 309 135 1858 113 0 32 chr1 13189570 13189853 -229474500 - AluSc SINE Alu -3 306 33 2294 83 7 0 chr1 13189853 13190152 -229474201 - AluSq SINE Alu -10 303 1 1897 123 0 73 chr1 13190845 13191161 -229473192 - AluSx SINE Alu -19 293 1 297 274 35 31 chr1 13191208 13191329 -229473024 - MIR3 SINE MIR -102 106 9 231 312 14 0 chr1 13191880 13191962 -229472391 - MIR SINE MIR -88 120 37 212 240 0 20 chr1 13192209 13192259 -229472094 - L2 LINE L2 -3 3310 3262 195 42 0 0 chr1 13193490 13193514 -229470839 + (TCCCC)n Simple_repeat Simple_repeat 3 26 0 364 280 20 10 chr1 13193553 13193653 -229470700 - MIR SINE MIR -77 185 85 236 247 0 26 chr1 13194673 13194829 -229469524 + G-rich Low_complexity Low_complexity 1 151 0 27 49 0 0 chr1 13194855 13194896 -229469457 + GC_rich Low_complexity Low_complexity 1 41 0 276 53 0 0 chr1 13195496 13195534 -229468819 + (CA)n Simple_repeat Simple_repeat 2 39 0 1431 244 135 24 chr1 13196166 13196608 -229467745 - L2 LINE L2 -2 3311 2919 3899 100 14 45 chr1 13196608 13196848 -229467505 - MER41A LTR ERV1 0 554 308 2138 102 14 0 chr1 13196848 13197142 -229467211 - AluSx SINE Alu -14 298 1 1952 142 13 3 chr1 13197142 13197444 -229466909 - AluSx SINE Alu -7 305 1 3899 100 14 45 chr1 13197444 13197774 -229466579 - MER41A LTR ERV1 -244 310 1 1431 244 135 24 chr1 13197774 13197879 -229466474 - L2 LINE L2 -394 2919 2827 2165 106 0 3 chr1 13197879 13198180 -229466173 - AluSx SINE Alu -12 300 1 1431 244 135 24 chr1 13198180 13198303 -229466050 - L2 LINE L2 -486 2827 2567 234 65 0 0 chr1 13198521 13198552 -229465801 + MIR SINE MIR 116 146 -62 1329 199 66 68 chr1 13198573 13198782 -229465571 + L1MB7 LINE L1 5740 5948 -236 1954 142 3 22 chr1 13198782 13198920 -229465433 + AluJo SINE Alu 1 140 -172 2046 141 0 0 chr1 13198920 13199225 -229465128 + AluSx SINE Alu 3 307 -5 1954 142 3 22 chr1 13199225 13199402 -229464951 + AluJo SINE Alu 140 310 -2 1329 199 66 68 chr1 13199402 13199633 -229464720 + L1MB7 LINE L1 5948 6179 -5 1343 164 134 11 chr1 13199755 13200017 -229464336 + AluSx SINE Alu 1 294 -8 423 203 112 87 chr1 13200440 13200484 -229463869 - MIR SINE MIR -4 258 217 1870 164 17 0 chr1 13200484 13200782 -229463571 - AluJb SINE Alu -8 304 2 423 203 112 87 chr1 13200782 13200959 -229463394 - MIR SINE MIR -45 217 47 227 260 115 39 chr1 13201186 13201227 -229463126 - L2 LINE L2 0 3272 3236 1939 151 0 22 chr1 13201227 13201546 -229462807 + AluJo SINE Alu 1 312 0 227 260 115 39 chr1 13201546 13201608 -229462745 - L2 LINE L2 -36 3236 3161 193 284 189 0 chr1 13202289 13202363 -229461990 - MIR3 SINE MIR -4 204 117 2270 76 3 17 chr1 13202470 13202772 -229461581 - AluSp SINE Alu -15 298 1 1318 88 0 84 chr1 13202793 13203031 -229461322 - L1PB2 LINE L1 -33 6118 5901 268 308 118 47 chr1 13203735 13203904 -229460449 - MER5A DNA MER1_type -2 187 7 213 319 223 0 chr1 13204129 13204223 -229460130 + MIR3 SINE MIR 48 162 -46 370 247 195 13 chr1 13204273 13204427 -229459926 + MIR SINE MIR 81 262 0 547 313 35 15 chr1 13204532 13204733 -229459620 + MIR SINE MIR 58 262 0 21 0 0 0 chr1 13204837 13204858 -229459495 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 13205368 13205390 -229458963 + GC_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr1 13205913 13205949 -229458404 + GC_rich Low_complexity Low_complexity 1 36 0 2546 58 0 0 chr1 13206162 13206472 -229457881 + AluSq SINE Alu 1 310 -3 2162 99 0 7 chr1 13206631 13206924 -229457429 + AluSg SINE Alu 1 291 -19 199 236 55 0 chr1 13207081 13207136 -229457217 + L2 LINE L2 3198 3255 -17 1155 177 57 11 chr1 13207180 13207255 -229457098 + Tigger5 DNA MER2_type 2046 2116 -207 2141 83 0 0 chr1 13207255 13207562 -229456791 - AluSx SINE Alu 0 312 15 1155 177 57 11 chr1 13207562 13207751 -229456602 + Tigger5 DNA MER2_type 2116 2322 -1 302 274 60 0 chr1 13207778 13207862 -229456491 - MIR3 SINE MIR -47 161 73 2105 120 13 0 chr1 13208026 13208325 -229456028 - AluSx SINE Alu -9 303 1 2252 91 3 0 chr1 13208384 13208680 -229455673 - AluSg SINE Alu -13 297 1 266 244 73 24 chr1 13209773 13209855 -229454498 - MIR SINE MIR -88 120 35 217 281 67 0 chr1 13209930 13210018 -229454335 + MIR SINE MIR 36 129 -79 356 290 59 53 chr1 13210018 13210187 -229454166 - MER5B DNA MER1_type -3 175 6 2399 77 0 0 chr1 13212124 13212435 -229451918 - AluY SINE Alu 0 311 1 227 279 0 0 chr1 13213701 13213762 -229450591 + L2 LINE L2 3249 3309 -4 2174 104 0 10 chr1 13213868 13214166 -229450187 + AluSx SINE Alu 1 295 -17 190 271 0 57 chr1 13214194 13214264 -229450089 + MIR SINE MIR 117 182 -80 817 99 0 0 chr1 13215701 13215812 -229448541 + FLAM_C SINE Alu 1 111 -32 29 28 0 0 chr1 13215819 13215855 -229448498 + AT_rich Low_complexity Low_complexity 1 36 0 2382 64 0 3 chr1 13216229 13216526 -229447827 - AluY SINE Alu -14 297 2 1328 94 6 0 chr1 13216526 13216696 -229447657 + AluSq SINE Alu 6 176 -137 222 37 0 0 chr1 13216696 13216723 -229447630 + (TG)n Simple_repeat Simple_repeat 2 28 0 377 274 0 26 chr1 13216725 13216848 -229447505 + L1MC4 LINE L1 1996 6983 -1339 334 275 163 58 chr1 13216879 13216974 -229447379 - L2 LINE L2 -59 3254 3170 1981 116 10 10 chr1 13216974 13217268 -229447085 - AluSp SINE Alu -14 299 6 334 275 163 58 chr1 13217268 13217485 -229446868 - L2 LINE L2 -143 3170 2909 1022 153 6 0 chr1 13217892 13218055 -229446298 + FRAM SINE Alu 1 160 -16 2372 83 0 0 chr1 13218346 13218646 -229445707 - AluY SINE Alu -11 300 1 202 146 49 0 chr1 13218878 13218919 -229445434 + MIR SINE MIR 41 83 -179 2128 94 10 39 chr1 13219283 13219591 -229444762 - AluSq SINE Alu -14 299 1 2236 104 0 7 chr1 13219775 13220084 -229444269 + AluSg SINE Alu 1 307 -3 802 215 12 17 chr1 13220091 13220263 -229444090 + AluJo SINE Alu 86 256 -56 500 138 23 0 chr1 13220341 13220428 -229443925 + AluJ/FRAM SINE Alu 224 312 0 1249 132 5 20 chr1 13220551 13220598 -229443755 + AluJb SINE Alu 87 133 -179 2309 89 0 0 chr1 13220598 13220902 -229443451 + AluSg SINE Alu 1 304 -6 2154 67 20 91 chr1 13220902 13221244 -229443109 + AluYb8 SINE Alu 1 318 0 1249 132 5 20 chr1 13221244 13221392 -229442961 + AluJb SINE Alu 131 280 -32 198 0 0 0 chr1 13221392 13221414 -229442939 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 200 197 0 66 chr1 13222126 13222187 -229442166 + C-rich Low_complexity Low_complexity 5 61 0 1882 114 21 7 chr1 13222509 13222790 -229441563 + AluSx SINE Alu 11 295 -17 229 204 19 0 chr1 13222868 13222922 -229441431 + MER91A DNA MER1_type 4 58 -138 1669 115 70 80 chr1 13223086 13223200 -229441153 - THE1C LTR MaLR -5 370 256 2432 80 0 6 chr1 13223200 13223512 -229440841 + AluY SINE Alu 2 311 0 1669 115 70 80 chr1 13223512 13223771 -229440582 - THE1C LTR MaLR -119 256 1 202 222 0 0 chr1 13223772 13223808 -229440545 - MIR SINE MIR -22 240 205 1468 182 33 23 chr1 13225374 13225676 -229438677 + AluJo SINE Alu 1 305 -7 345 342 0 17 chr1 13225796 13225913 -229438440 + MIR SINE MIR 79 193 -69 726 219 9 43 chr1 13225940 13225998 -229438355 - MER3 DNA MER1_type -6 203 145 2225 89 10 0 chr1 13225998 13226302 -229438051 + AluSx SINE Alu 2 308 -4 726 219 9 43 chr1 13226302 13226453 -229437900 - MER3 DNA MER1_type -64 145 1 * 960 180 58 24 chr1 13226452 13226658 -229437695 + MER58A DNA MER1_type 3 215 -9 1505 128 88 36 chr1 13226661 13226935 -229437418 + AluJo SINE Alu 1 288 -24 207 0 0 0 chr1 13226951 13226974 -229437379 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2225 83 33 0 chr1 13227049 13227351 -229437002 - AluSp SINE Alu -1 312 1 341 306 134 13 chr1 13227378 13227535 -229436818 - MIR SINE MIR -54 208 33 486 259 37 7 chr1 13228437 13228572 -229435781 + MIR3 SINE MIR 20 158 -50 250 242 77 22 chr1 13228602 13228693 -229435660 - MER58C DNA MER1_type -39 176 81 2100 124 3 3 chr1 13228693 13228999 -229435354 - AluSx SINE Alu -6 306 1 565 222 16 8 chr1 13229017 13229143 -229435210 + MIR SINE MIR 20 146 -62 395 239 65 7 chr1 13229151 13229289 -229435064 - MER58C DNA MER1_type -1 214 69 183 282 73 73 chr1 13229552 13229676 -229434677 + MIR SINE MIR 30 153 -109 2341 74 0 3 chr1 13229694 13229992 -229434361 + AluSx SINE Alu 1 297 -15 1033 123 116 0 chr1 13229992 13230147 -229434206 + AluSg/x SINE Alu 132 304 -6 491 228 88 15 chr1 13230167 13230303 -229434050 + MIR SINE MIR 107 252 -10 196 267 99 30 chr1 13230852 13230953 -229433400 - MIR3 SINE MIR -95 113 6 198 71 0 0 chr1 13231180 13231208 -229433145 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr1 13231324 13231346 -229433007 + GC_rich Low_complexity Low_complexity 1 22 0 195 75 19 57 chr1 13231650 13231703 -229432650 + (CGGGG)n Simple_repeat Simple_repeat 1 51 0 287 325 73 0 chr1 13233094 13233217 -229431136 + MIR SINE MIR 67 198 -64 261 186 0 34 chr1 13233730 13233789 -229430564 - MIR SINE MIR -103 159 103 245 304 43 11 chr1 13233935 13234027 -229430326 + MIR SINE MIR 48 142 -66 759 180 0 8 chr1 13234036 13234164 -229430189 + AluJo/FLAM SINE Alu 1 127 -175 1745 88 65 54 chr1 13234167 13234461 -229429892 + AluSx SINE Alu 1 297 -15 921 272 34 8 chr1 13234513 13234752 -229429601 + MIR SINE MIR 12 256 -6 256 326 141 16 chr1 13234772 13234956 -229429397 - L2 LINE L2 -39 3233 3027 204 268 0 0 chr1 13235362 13235433 -229428920 + GA-rich Low_complexity Low_complexity 1 71 0 182 150 25 0 chr1 13236598 13236638 -229427715 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 239 289 36 0 chr1 13236744 13236827 -229427526 + MIR SINE MIR 92 177 -85 231 61 0 0 chr1 13237162 13237195 -229427158 + (GGCTG)n Simple_repeat Simple_repeat 1 33 0 490 218 49 35 chr1 13237644 13237786 -229426567 + L2 LINE L2 3170 3313 0 200 315 65 11 chr1 13238862 13238954 -229425399 - L2 LINE L2 -1 3271 3175 203 333 95 0 chr1 13239006 13239090 -229425263 - L2 LINE L2 -44 3228 3137 269 272 22 33 chr1 13240118 13240210 -229424143 - MIR SINE MIR -171 91 1 242 333 13 0 chr1 13240216 13240291 -229424062 + L3 LINE CR1 1306 1381 -196 29 0 0 0 chr1 13240391 13240420 -229423933 + AT_rich Low_complexity Low_complexity 1 29 0 1959 137 7 0 chr1 13240420 13240705 -229423648 - AluJo SINE Alu -25 287 1 262 209 291 9 chr1 13240724 13240834 -229423519 - L2 LINE L2 -17 3296 3156 359 281 67 22 chr1 13240839 13240974 -229423379 - MIR SINE MIR -1 261 121 982 118 0 14 chr1 13240974 13241118 -229423235 + AluSq/x SINE Alu 1 142 -171 288 77 0 0 chr1 13241143 13241182 -229423171 + (A)n Simple_repeat Simple_repeat 1 39 0 333 250 0 0 chr1 13241184 13241252 -229423101 - MIR SINE MIR -136 126 59 2241 105 0 16 chr1 13241252 13241567 -229422786 - AluSx SINE Alu -1 311 2 570 298 93 31 chr1 13241623 13241682 -229422671 - L2 LINE L2 -228 3085 3031 2080 126 0 7 chr1 13241682 13241983 -229422370 - AluSx SINE Alu -13 299 1 570 298 93 31 chr1 13241983 13242181 -229422172 - L2 LINE L2 -282 3031 2812 216 214 0 0 chr1 13242364 13242420 -229421933 + (ATG)n Simple_repeat Simple_repeat 3 58 0 223 404 11 11 chr1 13242499 13242593 -229421760 - MIR SINE MIR -73 135 42 950 74 0 0 chr1 13242714 13242835 -229421518 - AluSg/x SINE Alu -9 301 181 2223 95 3 0 chr1 13243144 13243439 -229420914 - AluSc SINE Alu -13 296 1 2103 103 13 7 chr1 13244633 13244933 -229419420 + AluSx SINE Alu 1 302 -10 370 283 48 11 chr1 13245166 13245328 -229419025 - MIR SINE MIR -62 200 36 203 268 0 36 chr1 13245361 13245417 -229418936 + L2 LINE L2 3218 3271 -1 201 108 0 0 chr1 13245625 13245662 -229418691 + (T)n Simple_repeat Simple_repeat 1 37 0 505 303 69 16 chr1 13245714 13245902 -229418451 - MIR SINE MIR -9 253 56 2208 115 3 0 chr1 13246135 13246439 -229417914 - AluSx SINE Alu -7 305 1 756 226 115 14 chr1 13246527 13246744 -229417609 + MIR SINE MIR 19 257 -5 203 318 54 31 chr1 13246777 13246906 -229417447 - L2 LINE L2 -147 3125 2994 264 77 0 0 chr1 13247216 13247255 -229417098 + (A)n Simple_repeat Simple_repeat 1 39 0 277 273 0 0 chr1 13247789 13247844 -229416509 - MIR SINE MIR -84 124 70 355 282 87 27 chr1 13247921 13248070 -229416283 + MIR SINE MIR 16 173 -89 480 293 92 44 chr1 13248074 13248323 -229416030 - MLT1K LTR MaLR -13 575 315 1118 94 0 0 chr1 13249232 13249381 -229414972 - AluSg/x SINE Alu -17 293 145 2570 39 0 3 chr1 13250218 13250525 -229413828 + AluY SINE Alu 1 306 -5 499 306 73 10 chr1 13250589 13250663 -229413690 - MIR SINE MIR -15 247 179 1959 63 47 0 chr1 13250663 13250917 -229413436 - AluY SINE Alu -45 266 1 499 306 73 10 chr1 13250917 13251048 -229413305 - MIR SINE MIR -83 179 29 381 264 69 125 chr1 13251875 13252163 -229412190 + L2 LINE L2 2924 3195 -77 247 171 0 0 chr1 13252197 13252238 -229412115 - L2 LINE L2 -12 3260 3220 2189 118 0 0 chr1 13252321 13252618 -229411735 + AluSx SINE Alu 1 297 -15 2055 113 0 7 chr1 13252658 13252941 -229411412 - AluSx SINE Alu -31 281 1 566 237 58 0 chr1 13252941 13253080 -229411273 - MIR SINE MIR -114 148 2 506 279 96 10 chr1 13253428 13253625 -229410728 + MIR SINE MIR 34 247 -15 1055 70 5 48 chr1 13253643 13253753 -229410600 + (TTCC)n Simple_repeat Simple_repeat 2 103 -77 1817 131 52 0 chr1 13253753 13254059 -229410294 - AluSx SINE Alu 0 320 1 1055 70 5 48 chr1 13254059 13254134 -229410219 + (TTCC)n Simple_repeat Simple_repeat 103 180 0 181 160 20 20 chr1 13254133 13254183 -229410170 + C-rich Low_complexity Low_complexity 2 51 0 * 748 114 8 15 chr1 13254187 13254319 -229410034 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 307 140 0 0 chr1 13255325 13255375 -229408978 - L2 LINE L2 0 3313 3264 1506 202 6 26 chr1 13255390 13255702 -229408651 + AluJb SINE Alu 1 306 -6 396 261 18 27 chr1 13256525 13256636 -229407717 - L2 LINE L2 -2 3270 3161 424 282 0 0 chr1 13257040 13257143 -229407210 - MER63 DNA MER1_type -273 787 685 243 273 0 0 chr1 13257139 13257194 -229407159 - MER63 DNA MER1_type -95 741 687 * 321 306 65 0 chr1 13257190 13257298 -229407055 - MER63 DNA MER1_type -321 741 1 189 310 216 6 chr1 13257765 13257819 -229406534 + L2 LINE L2 3005 3046 -267 2348 75 0 7 chr1 13257819 13258125 -229406228 - AluY SINE Alu -5 306 3 189 310 216 6 chr1 13258125 13258241 -229406112 + L2 LINE L2 3046 3211 -102 1917 134 0 0 chr1 13258268 13258544 -229405809 - AluSx SINE Alu -16 296 21 333 191 0 101 chr1 13258910 13258942 -229405411 - L1ME4a LINE L1 0 6121 6087 2102 120 3 3 chr1 13258942 13259241 -229405112 + AluSq SINE Alu 1 299 -14 333 191 0 101 chr1 13259241 13259297 -229405056 - L1ME4a LINE L1 -34 6087 6042 603 192 6 72 chr1 13260375 13260542 -229403811 + MER69 DNA AcHobo 43 198 -2328 299 225 98 70 chr1 13260549 13260591 -229403762 + MER69 DNA AcHobo 718 757 -1769 1708 245 80 15 chr1 13260591 13260883 -229403470 - MLT1D LTR MaLR 0 505 169 2089 127 17 0 chr1 13260883 13261182 -229403171 - AluSx SINE Alu -8 304 1 1708 245 80 15 chr1 13261182 13261363 -229402990 - MLT1D LTR MaLR -336 169 1 299 225 98 70 chr1 13261363 13261401 -229402952 + MER69 DNA AcHobo 757 792 -1734 210 37 0 0 chr1 13261401 13261428 -229402925 + (TG)n Simple_repeat Simple_repeat 2 28 0 299 225 98 70 chr1 13261428 13261467 -229402886 + MER69 DNA AcHobo 792 2150 -376 303 186 0 34 chr1 13261473 13261532 -229402821 + L1MC4 LINE L1 6640 6696 -1346 974 177 0 61 chr1 13261532 13261713 -229402640 - AluJb SINE Alu -18 294 125 497 164 151 20 chr1 13261717 13261869 -229402484 + MER69 DNA AcHobo 2152 2323 -203 1717 151 14 14 chr1 13261966 13262250 -229402103 + AluJb SINE Alu 5 288 -24 329 329 62 71 chr1 13262282 13262412 -229401941 + L2 LINE L2 2920 3050 -222 2074 101 42 0 chr1 13262412 13262699 -229401654 + AluSq SINE Alu 1 299 -14 329 329 62 71 chr1 13262699 13262905 -229401448 + L2 LINE L2 3050 3253 -19 218 283 0 0 chr1 13262988 13263041 -229401312 - MIR SINE MIR -162 100 48 216 162 27 0 chr1 13263759 13263796 -229400557 - MER91 DNA MER1_type -102 38 1 242 308 33 0 chr1 13264034 13264125 -229400228 + MIR SINE MIR 52 145 -63 195 138 0 0 chr1 13264422 13264451 -229399902 + MIR SINE MIR 116 144 -118 372 210 12 0 chr1 13264569 13264650 -229399703 + MIR3 SINE MIR 110 191 -17 404 279 29 22 chr1 13264879 13265015 -229399338 - Charlie8 DNA MER1_type -2142 275 139 420 252 8 47 chr1 13265017 13265144 -229399209 + MIR SINE MIR 126 247 -15 319 267 9 57 chr1 13265852 13265957 -229398396 + MIR SINE MIR 54 153 -109 2541 179 50 29 chr1 13266087 13266145 -229398208 - MER74A LTR ERVL -27 531 476 2427 78 0 0 chr1 13266145 13266453 -229397900 + AluSq SINE Alu 1 308 -5 2541 179 50 29 chr1 13266453 13266912 -229397441 - MER74A LTR ERVL -82 476 3 195 274 164 0 chr1 13266915 13266988 -229397365 - MIR SINE MIR -94 114 30 1033 280 84 36 chr1 13267139 13267477 -229396876 - MLT1K LTR MaLR -5 583 220 2186 110 0 3 chr1 13267477 13267777 -229396576 - AluSx SINE Alu -13 299 1 1033 280 84 36 chr1 13267777 13267856 -229396497 - MLT1K LTR MaLR -368 220 146 303 130 0 0 chr1 13267859 13267913 -229396440 + (TG)n Simple_repeat Simple_repeat 2 55 0 535 296 58 37 chr1 13268114 13268303 -229396050 + MIR3 SINE MIR 5 197 -11 272 300 83 17 chr1 13268363 13268510 -229395843 + MER5B DNA MER1_type 42 187 -2 207 234 0 31 chr1 13268900 13268964 -229395389 + MIR SINE MIR 84 145 -63 489 258 50 13 chr1 13269243 13269402 -229394951 + MIR SINE MIR 8 172 -90 518 290 93 0 chr1 13269484 13269667 -229394686 + MIR SINE MIR 63 262 0 341 292 9 35 chr1 13270153 13270266 -229394087 + MIR SINE MIR 47 156 -106 1761 152 0 23 chr1 13270268 13270571 -229393782 - AluJb SINE Alu -16 296 1 185 194 0 113 chr1 13271606 13271668 -229392685 + L3b LINE CR1 1304 1358 -225 760 192 62 13 chr1 13271677 13271901 -229392452 + MER113 DNA MER1_type? 1 235 -286 419 257 50 14 chr1 13272317 13272457 -229391896 + MIR3 SINE MIR 21 165 -43 1910 187 18 45 chr1 13272466 13272760 -229391593 + MLT2D LTR ERVL 2 365 -155 2650 93 11 11 chr1 13272760 13273124 -229391229 - THE1B LTR MaLR 0 364 1 1910 187 18 45 chr1 13273124 13273276 -229391077 + MLT2D LTR ERVL 365 520 0 457 319 45 33 chr1 13273378 13273683 -229390670 - MLT1L LTR MaLR -23 592 248 586 264 275 26 chr1 13274063 13274518 -229389835 + MLT1K LTR MaLR 15 582 -6 421 215 61 100 chr1 13274582 13274752 -229389601 - MIR SINE MIR -63 145 10 455 319 101 5 chr1 13274832 13275020 -229389333 - MIR SINE MIR 0 262 57 251 250 15 15 chr1 13275317 13275385 -229388968 + G-rich Low_complexity Low_complexity 2 69 0 4029 133 85 75 chr1 13276244 13277597 -229386756 - pTR5 LTR ERV1 0 2438 74 437 295 51 19 chr1 13277604 13277760 -229386593 - MLT1I LTR MaLR -39 370 210 2039 120 27 0 chr1 13278201 13278502 -229385851 - AluSx SINE Alu -3 309 1 1832 212 17 29 chr1 13278505 13278553 -229385800 - L1MB7 LINE L1 -5 6179 6132 2186 105 10 0 chr1 13278553 13278849 -229385504 - AluSx SINE Alu -13 299 1 1832 212 17 29 chr1 13278849 13279219 -229385134 - L1MB7 LINE L1 -52 6132 5766 1755 160 45 0 chr1 13279225 13279513 -229384840 - AluJo SINE Alu -11 301 1 369 347 52 19 chr1 13279521 13279792 -229384561 + L2 LINE L2 2697 2976 -338 485 244 29 29 chr1 13279868 13280073 -229384280 - L1MC5 LINE L1 -170 7791 7587 658 268 53 13 chr1 13280234 13280462 -229383891 - L1MC5 LINE L1 -465 7496 7260 1159 88 0 0 chr1 13280462 13280621 -229383732 - AluSc SINE Alu -1 308 150 905 214 90 0 chr1 13280753 13280954 -229383399 + MER20 DNA MER1_type 1 219 0 1512 171 21 21 chr1 13281179 13281314 -229383039 + AluJo SINE Alu 1 135 -177 2092 121 0 7 chr1 13281314 13281611 -229382742 + AluSq SINE Alu 1 295 -18 1512 171 21 21 chr1 13281611 13281755 -229382598 + AluJo SINE Alu 134 280 -32 510 281 35 25 chr1 13281756 13281955 -229382398 - L1MC5 LINE L1 -1958 5850 5650 313 317 21 83 chr1 13281988 13282228 -229382125 + L2 LINE L2 3007 3231 -41 363 184 0 122 chr1 13282231 13282267 -229382086 + MER81 DNA DNA 29 68 -46 2033 124 3 3 chr1 13282267 13282565 -229381788 - AluSx SINE Alu -14 298 1 363 184 0 122 chr1 13282565 13282626 -229381727 + MER81 DNA DNA 68 114 0 262 116 0 0 chr1 13282626 13282669 -229381684 + L2 LINE L2 3267 3309 -4 550 345 31 31 chr1 13282684 13282974 -229381379 + MER102a DNA MER1_type 31 320 -10 313 343 0 37 chr1 13282985 13283119 -229381234 + MIR SINE MIR 6 134 -128 210 265 20 39 chr1 13283432 13283534 -229380819 + (CTGGGG)n Simple_repeat Simple_repeat 3 102 0 456 282 67 55 chr1 13283820 13284075 -229380278 + L2 LINE L2 3014 3271 -1 1616 188 0 13 chr1 13284378 13284676 -229379677 - AluJb SINE Alu -7 305 12 314 326 11 0 chr1 13286393 13286488 -229377865 + MIR3 SINE MIR 62 157 -51 524 254 62 40 chr1 13286503 13286680 -229377673 - MIR3 SINE MIR -23 185 5 459 261 23 15 chr1 13286808 13286938 -229377415 + MIR SINE MIR 20 150 -58 1156 210 48 12 chr1 13287647 13287899 -229376454 - MIR SINE MIR 0 262 2 537 174 0 0 chr1 13288627 13288725 -229375628 - FLAM_A SINE Alu -1 141 44 2076 131 3 6 chr1 13288871 13289184 -229375169 + AluSx SINE Alu 1 312 0 489 335 179 58 chr1 13289486 13289813 -229374540 - L2 LINE L2 -255 3058 2772 1923 93 0 45 chr1 13289813 13290152 -229374201 + AluSx SINE Alu 7 332 0 489 335 179 58 chr1 13290152 13290175 -229374178 - L2 LINE L2 -541 2772 2753 1472 165 13 0 chr1 13290175 13290412 -229373941 + AluJo SINE Alu 26 265 -47 489 335 179 58 chr1 13290412 13290789 -229373564 - L2 LINE L2 -560 2753 2238 313 270 165 0 chr1 13290848 13290963 -229373390 + L2 LINE L2 3138 3271 -1 803 304 143 11 chr1 13290981 13291330 -229373023 - L2 LINE L2 0 3313 2919 471 231 18 2 chr1 13292492 13292628 -229371725 - MIR SINE MIR -62 146 17 731 211 128 15 chr1 13293274 13293478 -229370875 - MIR SINE MIR -5 257 31 24 67 0 0 chr1 13293521 13293566 -229370787 + AT_rich Low_complexity Low_complexity 1 45 0 252 0 0 0 chr1 13293624 13293652 -229370701 + (TTG)n Simple_repeat Simple_repeat 2 29 0 717 279 69 26 chr1 13293688 13293921 -229370432 + MIR SINE MIR 20 262 0 1560 226 206 28 chr1 13293987 13294307 -229370046 - MLT1G1 LTR MaLR 0 595 333 1769 208 38 58 chr1 13294307 13294759 -229369594 - LTR47B LTR ERVL 0 443 1 1560 226 206 28 chr1 13294759 13294903 -229369450 - MLT1G1 LTR MaLR -262 333 216 2164 125 0 0 chr1 13294903 13295214 -229369139 - AluSx SINE Alu -1 311 1 1560 226 206 28 chr1 13295214 13295253 -229369100 - MLT1G1 LTR MaLR -379 216 1 702 314 109 21 chr1 13295282 13295620 -229368733 - MLT1J2 LTR MaLR -50 400 33 459 264 0 0 chr1 13295654 13295764 -229368589 + L2 LINE L2 3203 3312 -1 1621 178 7 0 chr1 13296797 13297072 -229367281 - AluJo SINE Alu -26 286 10 247 350 133 0 chr1 13297338 13297458 -229366895 + L2 LINE L2 3136 3271 -1 2231 111 0 6 chr1 13297465 13297780 -229366573 + AluSp SINE Alu 1 313 0 1070 252 73 69 chr1 13297954 13298082 -229366271 - MLT1H1 LTR MaLR 0 555 429 2889 111 21 12 chr1 13298082 13298506 -229365847 - MSTA LTR MaLR 0 428 1 1070 252 73 69 chr1 13298506 13298925 -229365428 - MLT1H1 LTR MaLR -126 429 7 527 296 77 6 chr1 13298947 13299116 -229365237 + MIR3 SINE MIR 9 189 -19 381 275 62 67 chr1 13299731 13299909 -229364444 + MIR SINE MIR 16 192 -70 190 343 27 0 chr1 13300356 13300429 -229363924 - MER5A DNA MER1_type -41 148 74 464 14 55 0 chr1 13300964 13301037 -229363316 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 1663 151 3 25 chr1 13301162 13301479 -229362874 - MER33 DNA MER1_type -13 311 2 405 173 198 0 chr1 13301696 13301777 -229362576 - FLAM_A SINE Alu -36 106 10 1517 160 132 7 chr1 13302561 13302883 -229361470 - MLT1A2 LTR MaLR 0 390 1 245 149 0 43 chr1 13302914 13302961 -229361392 - MLT1J LTR MaLR -376 135 91 498 291 62 59 chr1 13303156 13303572 -229360781 - L1ME4a LINE L1 -177 5944 5525 2191 114 0 0 chr1 13303572 13303869 -229360484 + AluSg SINE Alu 1 297 -13 498 291 62 59 chr1 13303869 13303940 -229360413 - L1ME4a LINE L1 -596 5525 5456 2380 167 39 9 chr1 13304187 13304624 -229359729 - MER66B LTR ERV1 -10 476 27 844 168 0 0 chr1 13305153 13305284 -229359069 - FLAM_A SINE Alu -2 131 1 825 248 41 11 chr1 13305396 13305666 -229358687 - LTR16C LTR ERVL 0 491 214 2377 121 5 39 chr1 13305773 13306161 -229358192 + THE1C LTR MaLR 1 375 0 468 318 40 6 chr1 13306242 13306415 -229357938 - MIR SINE MIR -75 187 9 200 172 17 0 chr1 13306952 13307010 -229357343 + (TA)n Simple_repeat Simple_repeat 2 60 0 580 311 49 0 chr1 13307010 13307193 -229357160 - MIR SINE MIR -58 204 13 1895 141 17 0 chr1 13307269 13307566 -229356787 - AluSx SINE Alu -9 303 2 802 261 89 43 chr1 13308237 13308608 -229355745 - L2 LINE L2 0 3313 2926 429 262 116 77 chr1 13308652 13308725 -229355628 - L2 LINE L2 -529 2785 2716 326 23 23 0 chr1 13308725 13308768 -229355585 + (TG)n Simple_repeat Simple_repeat 1 44 0 192 40 0 0 chr1 13308769 13308794 -229355559 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 1547 141 43 50 chr1 13308795 13308971 -229355382 - AluJb SINE Alu -37 275 99 2060 92 3 7 chr1 13308971 13309290 -229355063 - AluSq SINE Alu 0 318 1 1547 141 43 50 chr1 13309290 13309389 -229354964 - AluJb SINE Alu -213 99 1 429 262 116 77 chr1 13309389 13309647 -229354706 - L2 LINE L2 -597 2717 2437 935 248 16 29 chr1 13309850 13309952 -229354401 - MIR SINE MIR 0 262 160 3796 52 2 0 chr1 13309952 13310395 -229353958 + MLT2A1 LTR ERVL 1 444 0 935 248 16 29 chr1 13310395 13310538 -229353815 - MIR SINE MIR -102 160 20 1708 144 2 138 chr1 13310845 13310958 -229353395 - MLT1B LTR MaLR 0 390 263 2032 107 12 55 chr1 13310958 13311284 -229353069 + AluSx SINE Alu 1 312 0 1708 144 2 138 chr1 13311284 13311432 -229352921 - MLT1B LTR MaLR -127 263 211 1895 158 0 0 chr1 13311432 13311723 -229352630 - AluJb SINE Alu -21 291 1 1708 144 2 138 chr1 13311723 13311903 -229352450 - MLT1B LTR MaLR -179 211 8 2277 149 30 10 chr1 13312515 13312939 -229351414 + MLT2C2 LTR ERVL 1 480 -40 224 241 0 19 chr1 13312939 13312993 -229351360 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 242 166 0 9 chr1 13313009 13313066 -229351287 + MLT2C2 LTR ERVL 422 464 0 423 280 223 24 chr1 13313238 13313449 -229350904 + MIR SINE MIR 2 254 -8 254 140 0 35 chr1 13314192 13314249 -229350104 - MLT2B1 LTR ERVL 0 520 466 257 289 0 13 chr1 13314251 13314327 -229350026 + (TATG)n Simple_repeat Simple_repeat 2 76 0 266 107 89 0 chr1 13314327 13314383 -229349970 - MLT2C2 LTR ERVL -40 424 364 201 237 0 0 chr1 13314394 13314453 -229349900 + (TG)n Simple_repeat Simple_repeat 1 59 0 707 299 0 6 chr1 13314558 13314735 -229349618 - MIR SINE MIR -85 177 2 245 220 0 0 chr1 13314890 13314940 -229349413 - MER117 DNA MER1_type -104 93 44 258 231 51 26 chr1 13314949 13315027 -229349326 - MLT1K LTR MaLR -36 552 473 200 35 35 0 chr1 13315491 13315520 -229348833 + (TG)n Simple_repeat Simple_repeat 2 31 0 611 212 42 12 chr1 13315962 13316135 -229348218 - MIR SINE MIR -44 164 1 260 325 12 0 chr1 13316730 13316810 -229347543 + L2 LINE L2 3179 3259 -54 600 259 6 36 chr1 13316818 13316984 -229347369 - MER91B DNA MER1_type -26 164 4 2168 116 0 0 chr1 13317352 13317653 -229346700 + AluSq SINE Alu 1 301 -12 2251 86 16 3 chr1 13317900 13318203 -229346150 + AluY SINE Alu 1 307 -4 194 425 45 0 chr1 13318208 13318342 -229346011 - MIR SINE MIR -10 252 113 1059 206 0 5 chr1 13318345 13318549 -229345804 - MER58A DNA MER1_type 0 224 22 515 270 40 3 chr1 13318636 13318787 -229345566 + MIR SINE MIR 30 183 -62 459 355 39 0 chr1 13319657 13319812 -229344541 - MIR SINE MIR -54 208 48 489 269 17 0 chr1 13319883 13320002 -229344351 + MIR SINE MIR 47 167 -95 1535 228 78 42 chr1 13320031 13320482 -229343871 - MLT1C LTR MaLR 0 467 1 417 211 48 78 chr1 13321057 13321223 -229343130 - L1ME4a LINE L1 -1 6120 5960 1494 147 88 28 chr1 13321257 13321328 -229343025 - AluJo SINE Alu -5 307 242 2461 178 38 23 chr1 13321328 13321807 -229342546 - MER66B LTR ERV1 0 486 1 1494 147 88 28 chr1 13321807 13322020 -229342333 - AluJo SINE Alu -70 242 6 354 317 11 27 chr1 13322027 13322210 -229342143 - L1ME4a LINE L1 -209 5912 5733 189 244 58 58 chr1 13322832 13322918 -229341435 + MER5B DNA MER1_type 28 113 -65 588 259 90 21 chr1 13323169 13323358 -229340995 - MIR SINE MIR -11 251 50 1345 165 0 56 chr1 13323379 13323483 -229340870 - L1M4 LINE L1 -883 5263 5155 2097 106 33 0 chr1 13323483 13323785 -229340568 - AluSx SINE Alu 0 312 1 1345 165 0 56 chr1 13323785 13324001 -229340352 - L1M4 LINE L1 -991 5155 4961 789 175 88 29 chr1 13324011 13324182 -229340171 - AluJo SINE Alu -12 300 120 737 135 8 0 chr1 13324195 13324321 -229340032 + CT-rich Low_complexity Low_complexity 1 127 0 758 186 8 0 chr1 13324323 13324447 -229339906 - AluJo SINE Alu -187 125 1 243 294 156 0 chr1 13325389 13325498 -229338855 - MIR3 SINE MIR -48 160 35 273 29 0 0 chr1 13326122 13326156 -229338197 + (TG)n Simple_repeat Simple_repeat 1 34 0 208 385 83 0 chr1 13326666 13326775 -229337578 + L2 LINE L2 3155 3272 0 262 167 21 0 chr1 13326876 13326924 -229337429 - L2 LINE L2 0 3313 3265 604 324 49 0 chr1 13328564 13328768 -229335585 - MIR SINE MIR -45 217 4 276 30 0 0 chr1 13329458 13329491 -229334862 + (CA)n Simple_repeat Simple_repeat 1 33 0 686 219 25 6 chr1 13329493 13329653 -229334700 - MLT1G LTR MaLR -2 588 426 341 315 11 11 chr1 13329670 13329833 -229334520 - MLT1G1 LTR MaLR -308 241 79 1634 218 52 8 chr1 13329833 13330200 -229334153 - MER70A LTR ERVL 0 472 90 694 149 104 52 chr1 13330196 13330350 -229334003 - MER70A LTR ERVL -310 162 1 * 307 115 0 0 chr1 13330367 13330419 -229333934 - MLT1G1 LTR MaLR -532 63 12 514 308 104 23 chr1 13330472 13330771 -229333582 + MLT1K LTR MaLR 138 460 -128 290 321 207 0 chr1 13331118 13331258 -229333095 + MIR SINE MIR 70 238 -24 340 397 43 5 chr1 13332058 13332242 -229332111 - MIR3 SINE MIR -5 203 13 2992 164 25 4 chr1 13332302 13332778 -229331575 + MER66B LTR ERV1 1 486 0 313 216 80 0 chr1 13333327 13333415 -229330938 + L2 LINE L2 2591 2685 -629 1541 208 40 103 chr1 13333418 13333943 -229330410 - MLT2B1 LTR ERVL -2 518 27 1127 288 81 34 chr1 13333975 13334124 -229330229 + L2 LINE L2 2699 2839 -474 1797 174 0 7 chr1 13334124 13334423 -229329930 - AluJo SINE Alu -15 297 1 1127 288 81 34 chr1 13334423 13334819 -229329534 + L2 LINE L2 2839 3313 0 2070 102 11 0 chr1 13335883 13336168 -229328185 + AluSx SINE Alu 1 288 -24 1777 218 93 29 chr1 13336168 13336236 -229328117 - L1ME3 LINE L1 0 6162 6100 2502 50 0 0 chr1 13336236 13336535 -229327818 + AluY SINE Alu 1 299 -12 1777 218 93 29 chr1 13336535 13337044 -229327309 - L1ME3 LINE L1 -62 6100 5548 1933 140 20 3 chr1 13337471 13337764 -229326589 + AluJo SINE Alu 1 298 -14 2333 79 0 29 chr1 13337766 13338082 -229326271 + AluY SINE Alu 1 307 -4 525 144 22 44 chr1 13338446 13338627 -229325726 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 889 231 0 0 chr1 13338635 13338808 -229325545 - AluJo SINE Alu -18 294 122 214 274 151 0 chr1 13340369 13340442 -229323911 - L2 LINE L2 -21 3251 3168 206 318 146 0 chr1 13340474 13340584 -229323769 - MIR SINE MIR -14 248 123 630 262 84 5 chr1 13340589 13340780 -229323573 + MLT1H LTR MaLR 2 207 -342 1210 219 62 78 chr1 13340780 13341096 -229323257 - MLT1C LTR MaLR -1 466 157 1886 173 19 73 chr1 13341096 13341506 -229322847 - MLT1B LTR MaLR 0 390 3 1210 219 62 78 chr1 13341506 13341627 -229322726 - MLT1C LTR MaLR -310 157 36 21 0 0 0 chr1 13341629 13341650 -229322703 + AT_rich Low_complexity Low_complexity 1 21 0 2099 127 0 13 chr1 13341651 13341966 -229322387 - AluSx SINE Alu -1 311 1 698 261 76 33 chr1 13342007 13342337 -229322016 + MLT1H LTR MaLR 205 548 -1 195 220 40 0 chr1 13342340 13342390 -229321963 - MIR SINE MIR -141 121 70 423 284 37 15 chr1 13342533 13342667 -229321686 + MIR SINE MIR 56 192 -70 188 254 211 0 chr1 13342822 13342893 -229321460 + MIR SINE MIR 33 118 -90 234 342 118 58 chr1 13343456 13343819 -229320534 - L2 LINE L2 -77 3195 2811 231 345 108 7 chr1 13344375 13344523 -229319830 - MIR SINE MIR -41 221 59 204 277 0 0 chr1 13344844 13344891 -229319462 + CT-rich Low_complexity Low_complexity 3 49 0 654 332 53 11 chr1 13345089 13345400 -229318953 - L1MC/D LINE L1 -693 5651 5414 185 377 35 9 chr1 13345434 13345548 -229318805 + MIR SINE MIR 30 146 -62 211 229 181 24 chr1 13346267 13346350 -229318003 + MIR SINE MIR 108 203 -59 219 36 0 0 chr1 13346528 13346556 -229317797 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1489 170 59 4 chr1 13346565 13346835 -229317518 - AluSx SINE Alu -27 285 1 408 339 121 0 chr1 13347404 13347578 -229316775 + MIR SINE MIR 12 206 -56 1260 248 72 19 chr1 13347584 13348012 -229316341 + MLT1C LTR MaLR 16 466 -1 232 308 94 8 chr1 13349037 13349154 -229315199 + MIR SINE MIR 61 187 -75 225 308 19 47 chr1 13350234 13350341 -229314012 - MIR3 SINE MIR 0 208 105 418 278 57 17 chr1 13351208 13351384 -229312969 + MIR SINE MIR 79 261 -1 422 323 82 43 chr1 13352005 13352284 -229312069 + L2 LINE L2 2908 3197 -75 1639 164 48 48 chr1 13352531 13352611 -229311742 + L1MB3 LINE L1 5805 5884 -299 2331 88 7 3 chr1 13352611 13352918 -229311435 + AluSx SINE Alu 1 308 -4 1639 164 48 48 chr1 13352918 13353162 -229311191 + L1MB3 LINE L1 5884 6133 -50 1960 104 14 28 chr1 13353162 13353473 -229310880 + AluSx SINE Alu 1 307 0 1639 164 48 48 chr1 13353473 13353525 -229310828 + L1MB3 LINE L1 6132 6183 0 237 287 126 0 chr1 13353779 13353866 -229310487 - MIR SINE MIR -67 141 44 452 248 16 47 chr1 13354259 13354388 -229309965 + MIR SINE MIR 20 144 -118 305 311 66 0 chr1 13356783 13356905 -229307448 + MIR3 SINE MIR 30 159 -49 399 275 158 0 chr1 13357567 13357738 -229306615 + L2 LINE L2 3115 3312 -1 184 273 93 93 chr1 13357924 13358063 -229306290 - L2 LINE L2 -56 3257 3119 804 349 101 9 chr1 13358078 13358505 -229305848 - L2 LINE L2 0 3313 2848 2184 99 13 0 chr1 13358593 13358897 -229305456 - AluY SINE Alu -3 308 1 1991 117 31 14 chr1 13358933 13359223 -229305130 + AluSx SINE Alu 1 295 -17 577 301 170 16 chr1 13359725 13360037 -229304316 - L2 LINE L2 -1 3271 2912 1284 124 4 68 chr1 13360141 13360375 -229303978 + AluJo SINE Alu 87 305 -7 729 235 75 5 chr1 13360492 13360692 -229303661 - MIR SINE MIR -36 226 13 357 339 11 11 chr1 13361190 13361367 -229302986 + G-rich Low_complexity Low_complexity 3 179 0 333 307 6 28 chr1 13361404 13361583 -229302770 + G-rich Low_complexity Low_complexity 3 177 0 217 222 60 54 chr1 13362548 13362715 -229301638 + (CTCTG)n Simple_repeat Simple_repeat 3 170 0 220 259 176 0 chr1 13362960 13363045 -229301308 - MIR SINE MIR -74 188 89 392 148 0 87 chr1 13363179 13363375 -229300978 + (GGCTG)n Simple_repeat Simple_repeat 2 180 0 * 429 0 0 264 chr1 13363342 13363581 -229300772 + (GCTG)n Simple_repeat Simple_repeat 4 179 0 * 431 138 0 87 chr1 13363432 13363628 -229300725 + (GGCTG)n Simple_repeat Simple_repeat 2 180 0 273 325 212 0 chr1 13364049 13364332 -229300021 + L2 LINE L2 2446 2788 -526 201 74 0 0 chr1 13364476 13364503 -229299850 + (TCTCC)n Simple_repeat Simple_repeat 1 27 0 238 145 16 65 chr1 13364515 13364577 -229299776 + C-rich Low_complexity Low_complexity 1 59 0 274 175 0 90 chr1 13364589 13364766 -229299587 + C-rich Low_complexity Low_complexity 2 162 0 222 317 139 47 chr1 13364768 13365172 -229299181 + L2 LINE L2 2827 3267 -5 449 348 81 5 chr1 13365828 13366049 -229298304 - MIR SINE MIR 0 262 25 403 289 28 85 chr1 13367325 13367536 -229296817 - MIR SINE MIR -27 235 37 331 296 43 62 chr1 13367605 13367767 -229296586 - MER91B DNA MER1_type -14 176 18 728 273 32 14 chr1 13368159 13368379 -229295974 + MIR SINE MIR 7 230 -32 246 296 49 0 chr1 13368939 13369020 -229295333 + L2 LINE L2 3188 3272 0 274 196 69 4 chr1 13369265 13369354 -229294999 - MIR SINE MIR -71 137 33 411 264 23 16 chr1 13369599 13369728 -229294625 + MIR SINE MIR 63 192 -70 310 236 191 11 chr1 13371059 13371148 -229293205 + L2 LINE L2 3168 3272 0 802 216 18 0 chr1 13371887 13372054 -229292299 + MER5B DNA MER1_type 9 178 0 27 0 0 0 chr1 13372192 13372219 -229292134 + AT_rich Low_complexity Low_complexity 1 27 0 549 210 249 24 chr1 13372241 13372446 -229291907 + L1MEc LINE L1 3 253 -6143 765 244 84 40 chr1 13372456 13372861 -229291492 + L1MEc LINE L1 1286 1708 -4688 1693 154 13 32 chr1 13372861 13373058 -229291295 - AluJo SINE Alu -7 305 106 2804 64 3 11 chr1 13373058 13373416 -229290937 + THE1A LTR MaLR 1 355 0 12309 82 2 10 chr1 13373416 13375008 -229289345 + THE1A-int LTR MaLR 1 1580 0 2638 95 3 14 chr1 13375008 13375367 -229288986 + THE1A LTR MaLR 1 355 0 1693 154 13 32 chr1 13375367 13375478 -229288875 - AluJo SINE Alu -203 109 1 3660 215 69 28 chr1 13375478 13376043 -229288310 + L1MEc LINE L1 1700 2241 -3974 1956 95 7 4 chr1 13376043 13376339 -229288014 - AluY SINE Alu 0 307 11 3660 215 69 28 chr1 13376339 13377271 -229287082 + L1MEc LINE L1 2241 3253 -2962 1545 123 28 16 chr1 13377271 13377524 -229286829 + L1MA1 LINE L1 6047 6302 0 3660 215 69 28 chr1 13377524 13377733 -229286620 + L1MEc LINE L1 3253 3452 -2763 1586 176 17 3 chr1 13377733 13378028 -229286325 - AluJo SINE Alu -13 299 1 540 197 49 8 chr1 13378030 13378152 -229286201 + L1MA10 LINE L1 6205 6331 -3 1447 176 7 21 chr1 13379094 13379373 -229284980 + AluJo SINE Alu 35 309 -3 1277 294 65 40 chr1 13379373 13380354 -229283999 + L1MEc LINE L1 815 1820 -4576 217 278 105 53 chr1 13380824 13380957 -229283396 - L2 LINE L2 0 3313 3174 389 291 0 0 chr1 13381007 13381093 -229283260 - MER5A DNA MER1_type -95 94 9 249 328 57 11 chr1 13381124 13381247 -229283106 - MIR SINE MIR -76 132 6 2268 154 137 0 chr1 13381281 13381683 -229282670 - MSTB2 LTR MaLR 0 457 1 895 246 14 27 chr1 13381825 13382045 -229282308 + MIR SINE MIR 46 262 0 304 315 33 30 chr1 13382253 13382394 -229281959 - MIR SINE MIR -32 176 68 2515 174 80 54 chr1 13382400 13382935 -229281418 + MLT2B3 LTR ERVL 6 554 0 282 293 0 66 chr1 13384499 13384605 -229279748 - MIR3 SINE MIR -98 110 12 317 300 79 32 chr1 13385357 13385547 -229278806 + MIR SINE MIR 52 250 -12 322 354 70 0 chr1 13385630 13385788 -229278565 + MIR3 SINE MIR 29 197 -11 1406 161 87 32 chr1 13385990 13386300 -229278053 + MSTA LTR MaLR 102 428 0 356 197 0 40 chr1 13386350 13386426 -229277927 - MIR SINE MIR -113 149 77 471 18 0 0 chr1 13386694 13386750 -229277603 + (TG)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr1 13386814 13386836 -229277517 + AT_rich Low_complexity Low_complexity 1 22 0 210 306 14 0 chr1 13386985 13387057 -229277296 - L2 LINE L2 -14 3258 3186 2095 118 10 0 chr1 13387786 13388075 -229276278 - AluSx SINE Alu -20 292 1 1600 115 0 21 chr1 13389855 13390089 -229274264 - AluSx SINE Alu -66 246 18 213 39 0 0 chr1 13390818 13390844 -229273509 + (TG)n Simple_repeat Simple_repeat 1 26 0 1079 239 139 16 chr1 13390850 13391289 -229273064 - L1ME3 LINE L1 -2 6160 5668 2050 135 7 0 chr1 13391329 13391625 -229272728 - AluSx SINE Alu -14 298 1 4921 141 31 16 chr1 13391660 13392161 -229272192 - L1MC1 LINE L1 -11 6322 5803 2286 106 3 0 chr1 13392161 13392472 -229271881 - AluSx SINE Alu 0 312 1 4921 141 31 16 chr1 13392472 13392784 -229271569 - L1MC1 LINE L1 -530 5803 5497 309 350 11 6 chr1 13393072 13393249 -229271104 + GA-rich Low_complexity Low_complexity 2 179 0 245 290 112 47 chr1 13393729 13393836 -229270517 + L2 LINE L2 2943 3056 -257 492 291 143 9 chr1 13393923 13394153 -229270200 + MIR SINE MIR 2 262 0 1021 243 152 49 chr1 13394201 13394654 -229269699 + MLT1G1 LTR MaLR 1 500 -95 381 190 13 0 chr1 13394906 13394985 -229269368 + MADE1 DNA Mariner 1 80 0 375 207 12 0 chr1 13395005 13395087 -229269266 + L1MB8 LINE L1 5861 5943 -235 707 286 113 3 chr1 13395097 13395415 -229268938 - L2 LINE L2 -642 2672 2320 2221 93 0 0 chr1 13396160 13396449 -229267904 - AluSx SINE Alu -23 289 1 488 285 64 76 chr1 13396451 13396781 -229267572 - L2 LINE L2 -13 3300 2975 617 188 45 0 chr1 13396879 13397012 -229267341 - L1MB3 LINE L1 -152 6031 5893 399 325 113 4 chr1 13398011 13398242 -229266111 - MIR SINE MIR -2 260 5 2240 106 0 6 chr1 13398843 13399155 -229265198 - AluSx SINE Alu -2 310 1 778 305 108 24 chr1 13399745 13400252 -229264101 - L2 LINE L2 -3 3269 2729 535 301 52 41 chr1 13400312 13400647 -229263706 - LTR16A LTR ERVL -106 351 1 255 207 17 0 chr1 13400650 13400708 -229263645 + MIR SINE MIR 83 141 -67 2085 198 101 17 chr1 13400726 13401191 -229263162 + MLT1D LTR MaLR 1 504 -1 994 200 22 0 chr1 13401272 13401457 -229262896 + MER3 DNA MER1_type 16 204 -5 553 256 74 47 chr1 13401749 13401816 -229262537 + Charlie8 DNA MER1_type 1 65 -265 2054 116 0 14 chr1 13401816 13402141 -229262212 + AluSq SINE Alu 1 313 0 553 256 74 47 chr1 13402141 13402331 -229262022 + Charlie8 DNA MER1_type 65 265 -65 437 295 69 21 chr1 13402975 13403171 -229261182 + MIR SINE MIR 16 222 -40 530 80 0 93 chr1 13403674 13403836 -229260517 + (TCTCTG)n Simple_repeat Simple_repeat 5 151 0 328 199 42 37 chr1 13403843 13404034 -229260319 - Harlequin LTR ERV1 -5819 1077 886 396 0 0 0 chr1 13405396 13405440 -229258913 + (TG)n Simple_repeat Simple_repeat 2 45 0 1683 221 24 3 chr1 13405648 13405988 -229258365 + MER7A DNA MER2_type 1 345 -1 23 0 0 0 chr1 13405988 13406011 -229258342 + AT_rich Low_complexity Low_complexity 1 23 0 210 143 0 0 chr1 13406130 13406165 -229258188 + (TG)n Simple_repeat Simple_repeat 1 35 0 765 262 56 9 chr1 13406741 13406974 -229257379 + MIR SINE MIR 7 250 -12 9346 93 26 30 chr1 13406997 13408252 -229256101 - Tigger1 DNA MER2_type 0 2418 1168 2080 129 3 0 chr1 13408252 13408554 -229255799 - AluSp SINE Alu -10 303 1 9346 93 26 30 chr1 13408554 13408771 -229255582 - Tigger1 DNA MER2_type -1250 1168 952 1327 90 10 5 chr1 13409444 13409644 -229254709 - Tigger1 DNA MER2_type -1479 939 739 421 294 169 25 chr1 13409802 13409962 -229254391 - MIR SINE MIR -41 221 39 1017 249 70 50 chr1 13410193 13410266 -229254087 + MLT1J LTR MaLR 134 204 -411 255 61 0 0 chr1 13410266 13410299 -229254054 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2183 98 0 0 chr1 13410301 13410588 -229253765 - AluSx SINE Alu -25 287 1 1017 249 70 50 chr1 13410588 13410892 -229253461 + MLT1J LTR MaLR 204 615 0 1839 149 0 10 chr1 13411711 13412012 -229252341 + AluJo SINE Alu 1 298 -14 1502 159 91 34 chr1 13412062 13412382 -229251971 - MER44D DNA MER2_type -1 608 1 370 336 50 52 chr1 13412382 13412763 -229251590 - L2 LINE L2 -38 3234 2855 204 125 0 0 chr1 13413762 13413794 -229250559 + (TG)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr1 13413794 13413820 -229250533 + (GA)n Simple_repeat Simple_repeat 1 26 0 333 0 0 0 chr1 13414143 13414180 -229250173 + (TG)n Simple_repeat Simple_repeat 1 37 0 250 270 18 55 chr1 13414390 13414553 -229249800 + (TG)n Simple_repeat Simple_repeat 1 157 0 21 36 0 0 chr1 13415968 13415996 -229248357 + GC_rich Low_complexity Low_complexity 1 28 0 223 316 128 8 chr1 13418243 13418376 -229245977 - L3b LINE CR1 -125 1458 1310 731 251 5 35 chr1 13418537 13418740 -229245613 + MIR SINE MIR 58 254 -8 1388 154 57 4 chr1 13418974 13419220 -229245133 - AluJb SINE Alu -17 295 37 180 0 0 0 chr1 13419261 13419281 -229245072 + (TTA)n Simple_repeat Simple_repeat 3 22 0 310 160 0 0 chr1 13419306 13419356 -229244997 - AluJb SINE Alu -250 52 3 503 216 144 24 chr1 13419938 13420105 -229244248 - MIR SINE MIR -55 207 21 337 231 121 5 chr1 13420112 13420251 -229244102 - MIR SINE MIR -60 148 4 228 189 113 19 chr1 13420631 13420684 -229243669 - MIR3 SINE MIR -45 163 106 418 141 11 22 chr1 13420941 13421033 -229243320 + CT-rich Low_complexity Low_complexity 3 93 0 385 278 196 0 chr1 13421113 13421246 -229243107 - MIR SINE MIR -1 261 103 660 281 71 5 chr1 13421651 13421861 -229242492 + MIR SINE MIR 4 227 -35 893 281 33 0 chr1 13422075 13422317 -229242036 + MIR SINE MIR 5 254 -8 600 156 0 0 chr1 13422320 13422436 -229241917 - FRAM SINE Alu 0 178 63 2872 117 84 36 chr1 13422538 13423059 -229241294 - Tigger1 DNA MER2_type -1871 547 2 325 263 53 44 chr1 13423115 13423229 -229241124 + L2 LINE L2 3158 3272 0 1750 280 102 50 chr1 13423276 13423535 -229240818 + L1MEd LINE L1 45 289 -6021 2297 111 39 28 chr1 13423535 13423895 -229240458 - THE1B LTR MaLR 0 364 1 1750 280 102 50 chr1 13423895 13424561 -229239792 + L1MEd LINE L1 289 919 -5391 1812 134 3 54 chr1 13424561 13424875 -229239478 + AluSx SINE Alu 2 299 -13 1750 280 102 50 chr1 13424875 13425435 -229238918 + L1MEd LINE L1 919 1656 -4654 1950 133 13 10 chr1 13425472 13425773 -229238580 + AluJo SINE Alu 3 304 -8 2366 74 3 10 chr1 13425848 13426159 -229238194 + AluSp SINE Alu 1 309 -4 322 371 46 57 chr1 13426195 13426475 -229237878 + L1MEd LINE L1 1828 2104 -4206 405 278 17 9 chr1 13426479 13426594 -229237759 - MIR SINE MIR -74 134 19 2046 111 0 0 chr1 13426609 13426889 -229237464 + AluSx SINE Alu 1 280 -32 1011 124 6 23 chr1 13426893 13427070 -229237283 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 632 285 51 33 chr1 13427244 13427458 -229236895 - MIR SINE MIR -25 237 20 512 270 41 63 chr1 13427556 13427835 -229236518 + L1MC4 LINE L1 7651 7924 -118 1970 142 0 7 chr1 13427835 13428144 -229236209 + AluJo SINE Alu 6 312 0 512 270 41 63 chr1 13428144 13428183 -229236170 + L1MC4 LINE L1 7924 7962 -80 2020 138 0 31 chr1 13428335 13428654 -229235699 - AluSx SINE Alu -3 309 1 5136 149 14 33 chr1 13428728 13428852 -229235501 - MER49 LTR ERV1 -21 902 777 2360 167 43 14 chr1 13428852 13429266 -229235087 - MSTB LTR MaLR 0 426 1 5136 149 14 33 chr1 13429266 13429751 -229234602 - MER49 LTR ERV1 -146 777 313 2241 112 0 0 chr1 13429751 13430064 -229234289 - AluSq SINE Alu 0 313 1 5136 149 14 33 chr1 13430064 13430372 -229233981 - MER49 LTR ERV1 -610 313 1 346 100 100 43 chr1 13430636 13430706 -229233647 - MER81 DNA DNA -40 74 1 3451 279 67 24 chr1 13431245 13431475 -229232878 - L2 LINE L2 0 3313 3094 2202 112 0 0 chr1 13431475 13431770 -229232583 - AluSx SINE Alu -17 295 1 3451 279 67 24 chr1 13431770 13432294 -229232059 - L2 LINE L2 -219 3094 2594 2280 98 0 0 chr1 13432294 13432600 -229231753 + AluSx SINE Alu 1 306 -6 3451 279 67 24 chr1 13432600 13433011 -229231342 - L2 LINE L2 -719 2594 2202 7222 54 11 0 chr1 13433011 13434307 -229230046 + L1PA6 LINE L1 4846 6154 0 3451 279 67 24 chr1 13434307 13434690 -229229663 - L2 LINE L2 -1111 2202 1705 337 349 8 0 chr1 13435575 13435707 -229228646 - MIR SINE MIR -56 152 20 308 280 12 36 chr1 13435753 13435921 -229228432 + (TGGG)n Simple_repeat Simple_repeat 3 166 0 512 196 17 22 chr1 13437123 13437302 -229227051 + CT-rich Low_complexity Low_complexity 3 180 0 192 276 52 0 chr1 13437550 13437608 -229226745 - MIR SINE MIR 0 262 202 465 196 254 0 chr1 13437627 13437821 -229226532 + L2 LINE L2 2758 2996 -317 508 311 25 36 chr1 13438103 13438299 -229226054 - MIR SINE MIR -54 208 15 378 312 98 10 chr1 13438408 13438613 -229225740 + MIR SINE MIR 34 256 -6 430 29 88 0 chr1 13438873 13438941 -229225412 + (TTAGGG)n Simple_repeat Simple_repeat 5 78 0 397 228 88 26 chr1 13440219 13440333 -229224020 + MIR SINE MIR 17 137 -71 618 324 6 0 chr1 13440735 13440911 -229223442 - MER117 DNA MER1_type -6 191 15 605 312 104 51 chr1 13440979 13441288 -229223065 - L2 LINE L2 0 3313 3022 1892 146 0 10 chr1 13441288 13441583 -229222770 - AluSx SINE Alu -20 292 1 605 312 104 51 chr1 13441583 13441852 -229222501 - L2 LINE L2 -291 3022 2693 2107 116 3 3 chr1 13442973 13443276 -229221077 + AluSx SINE Alu 1 303 -9 287 243 146 29 chr1 13444939 13445042 -229219311 - L2 LINE L2 0 3272 3158 234 304 76 0 chr1 13445206 13445298 -229219055 + L2 LINE L2 3178 3276 -37 739 274 179 43 chr1 13445300 13445449 -229218904 - L2 LINE L2 0 3313 3186 1747 159 0 35 chr1 13445449 13445763 -229218590 + AluJb SINE Alu 1 303 -9 739 274 179 43 chr1 13445763 13446033 -229218320 - L2 LINE L2 -127 3186 2837 968 266 103 18 chr1 13446056 13446443 -229217910 + MLT1D LTR MaLR 1 420 -85 1729 151 41 0 chr1 13446472 13446763 -229217590 + AluJb SINE Alu 9 311 -1 894 252 34 51 chr1 13446795 13447040 -229217313 - LTR43 LTR ERV1 -123 479 237 2046 108 0 11 chr1 13447040 13447406 -229216947 + AluSx SINE Alu 1 363 0 894 252 34 51 chr1 13447406 13447453 -229216900 - LTR43 LTR ERV1 -365 237 191 2214 111 3 9 chr1 13447453 13447768 -229216585 + AluSq SINE Alu 1 313 0 236 139 23 0 chr1 13447771 13447814 -229216539 - LTR43 LTR ERV1 -368 234 191 2292 100 3 0 chr1 13447814 13448124 -229216229 + AluSx SINE Alu 1 311 -1 413 214 15 20 chr1 13448317 13448424 -229215929 + MLT1B LTR MaLR 224 352 -38 408 303 40 15 chr1 13448431 13448629 -229215724 - L2 LINE L2 -518 2796 2594 426 304 130 6 chr1 13448851 13449012 -229215341 - MIR SINE MIR -31 231 51 2009 107 20 20 chr1 13449019 13449319 -229215034 + AluSx SINE Alu 1 300 -12 183 263 18 0 chr1 13449400 13449457 -229214896 - MIR SINE MIR -158 104 47 246 105 0 0 chr1 13450386 13450424 -229213929 + (CA)n Simple_repeat Simple_repeat 2 39 0 1560 138 93 11 chr1 13450521 13450790 -229213563 - AluSx SINE Alu -21 291 1 2134 107 21 34 chr1 13451166 13451319 -229213034 + L1PB1 LINE L1 5821 5974 -177 2259 68 0 10 chr1 13451319 13451613 -229212740 + AluY SINE Alu 1 291 -20 2134 107 21 34 chr1 13451613 13451786 -229212567 + L1PB1 LINE L1 5974 6143 -8 33 0 0 0 chr1 13451786 13451819 -229212534 + AT_rich Low_complexity Low_complexity 1 33 0 231 252 122 27 chr1 13452038 13452185 -229212168 + MIR3 SINE MIR 29 189 -19 198 71 0 0 chr1 13452616 13452644 -229211709 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 374 147 78 52 chr1 13452926 13453042 -229211311 + L1ME4a LINE L1 5997 6115 -6 250 316 101 29 chr1 13453080 13453289 -229211064 + L3b LINE CR1 1229 1452 -131 394 233 47 62 chr1 13453337 13453466 -229210887 - MIR3 SINE MIR -24 184 58 2246 98 10 3 chr1 13453590 13453896 -229210457 - AluSx SINE Alu -2 310 3 520 276 105 44 chr1 13454714 13454942 -229209411 - MIR SINE MIR -1 261 20 2361 184 28 61 chr1 13455162 13455274 -229209079 + MLT2B1 LTR ERVL 1 115 -405 2121 108 3 3 chr1 13455274 13455569 -229208784 - AluSx SINE Alu -17 295 1 2361 184 28 61 chr1 13455569 13455994 -229208359 + MLT2B1 LTR ERVL 115 520 0 2783 3 0 0 chr1 13456864 13457171 -229207182 - AluYa5 SINE Alu -4 307 1 339 278 94 67 chr1 13457270 13457373 -229206980 - MER5A DNA MER1_type -4 185 72 1390 178 31 52 chr1 13457373 13457689 -229206664 - AluJb SINE Alu 0 310 1 339 278 94 67 chr1 13457689 13457764 -229206589 - MER5A DNA MER1_type -117 72 1 193 310 35 11 chr1 13458112 13458199 -229206154 - MIR SINE MIR -12 250 162 2269 102 0 3 chr1 13458443 13458757 -229205596 + AluSq SINE Alu 1 313 0 388 273 72 7 chr1 13459252 13459391 -229204962 + MIR3 SINE MIR 46 193 -15 214 264 19 0 chr1 13460139 13460192 -229204161 - MIR SINE MIR -112 150 97 279 0 0 0 chr1 13460343 13460374 -229203979 + (CA)n Simple_repeat Simple_repeat 2 32 0 1682 171 14 3 chr1 13461241 13461534 -229202819 + AluJo SINE Alu 1 296 -16 589 311 6 0 chr1 13462366 13462533 -229201820 + MIR SINE MIR 95 262 0 574 72 0 36 chr1 13463163 13463246 -229201107 + MADE1 DNA Mariner 1 80 0 556 268 77 0 chr1 13463912 13464080 -229200273 + MIR SINE MIR 48 228 -34 351 232 30 39 chr1 13464268 13464403 -229199950 + MIR SINE MIR 46 178 -68 655 306 50 0 chr1 13464696 13464895 -229199458 + MIR SINE MIR 54 262 0 189 283 61 71 chr1 13464847 13464946 -229199407 - MIR SINE MIR -48 214 117 * 234 91 0 0 chr1 13466177 13466210 -229198143 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 182 250 42 0 chr1 13466291 13466339 -229198014 + MIR SINE MIR 71 120 -142 673 296 27 11 chr1 13466499 13466685 -229197668 - MIR3 SINE MIR -15 193 5 877 277 105 15 chr1 13467309 13467634 -229196719 + MLT1K LTR MaLR 7 360 -228 232 206 0 63 chr1 13467677 13467740 -229196613 + MLT1K LTR MaLR 439 497 -91 289 261 169 39 chr1 13468832 13468962 -229195391 - L2 LINE L2 -3 3269 3123 201 182 0 45 chr1 13468981 13469025 -229195328 + L2 LINE L2 3267 3308 -5 635 151 76 17 chr1 13469457 13469576 -229194777 + FLAM_C SINE Alu 5 130 -3 387 248 50 0 chr1 13469637 13469738 -229194615 + MER5A DNA MER1_type 4 109 -80 2227 97 0 10 chr1 13469741 13469776 -229194577 - AluSp SINE Alu 0 313 279 1108 98 0 22 chr1 13469776 13469960 -229194393 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2227 97 0 10 chr1 13469960 13470248 -229194105 - AluSp SINE Alu -34 279 1 699 188 91 12 chr1 13470274 13470439 -229193914 - MER5B DNA MER1_type 0 178 1 227 232 37 61 chr1 13470469 13470551 -229193802 - MIR SINE MIR -66 196 117 883 215 10 41 chr1 13470579 13470666 -229193687 + MER5A DNA MER1_type 1 89 -100 1662 179 21 3 chr1 13470666 13470957 -229193396 + AluJb SINE Alu 12 307 -5 883 215 10 41 chr1 13470957 13471064 -229193289 + MER5A DNA MER1_type 89 189 0 411 144 198 18 chr1 13471071 13471182 -229193171 + MIR SINE MIR 19 149 -59 264 288 0 0 chr1 13471223 13471303 -229193050 - MER117 DNA MER1_type -49 148 69 304 337 131 31 chr1 13471305 13471596 -229192757 + L2 LINE L2 2948 3267 -5 1997 115 0 7 chr1 13471941 13472227 -229192126 + AluSx SINE Alu 17 300 -12 200 267 67 17 chr1 13472785 13472845 -229191508 - L2 LINE L2 -24 3289 3227 233 321 0 48 chr1 13472994 13473078 -229191275 - MIR SINE MIR -83 125 46 238 304 196 9 chr1 13473691 13473803 -229190550 - MIR SINE MIR -109 153 21 285 304 96 0 chr1 13473877 13474002 -229190351 - MIR3 SINE MIR -71 137 1 798 261 9 32 chr1 13474263 13474481 -229189872 + MIR SINE MIR 40 252 -10 271 325 97 69 chr1 13474475 13474711 -229189642 - L2 LINE L2 0 3272 3017 * 2229 103 3 0 chr1 13474711 13475012 -229189341 - AluSx SINE Alu -10 302 1 271 325 97 69 chr1 13475012 13475197 -229189156 - L2 LINE L2 -255 3017 2839 1378 241 67 14 chr1 13475221 13475656 -229188697 + MLT1C LTR MaLR 5 462 -5 1184 180 113 158 chr1 13476516 13476828 -229187525 - MLT1C LTR MaLR 0 467 99 1879 104 4 12 chr1 13476828 13477087 -229187266 - AluSx SINE Alu -55 257 1 1184 180 113 158 chr1 13477087 13477180 -229187173 - MLT1C LTR MaLR -368 99 3 497 301 119 0 chr1 13477182 13477375 -229186978 - MIR SINE MIR -3 259 44 250 220 17 0 chr1 13477576 13477635 -229186718 - MIR SINE MIR -64 144 85 295 331 48 0 chr1 13477804 13477928 -229186425 + MIR3 SINE MIR 33 162 -46 224 281 62 41 chr1 13478009 13478155 -229186198 + L2 LINE L2 2851 2999 -273 * 480 317 82 0 chr1 13478150 13478333 -229186020 + MIR SINE MIR 59 256 -6 461 289 116 12 chr1 13479606 13479779 -229184574 + MIR SINE MIR 2 192 -70 1539 217 60 54 chr1 13479823 13480307 -229184046 + MLT1D LTR MaLR 9 495 -10 516 299 36 36 chr1 13480367 13480561 -229183792 + MIR3 SINE MIR 14 207 -1 255 261 78 0 chr1 13481656 13481757 -229182596 - MIR SINE MIR -62 146 31 357 243 63 17 chr1 13481931 13482056 -229182297 + MIR SINE MIR 27 146 -62 366 276 173 27 chr1 13483210 13483395 -229180958 - MIR SINE MIR -37 225 14 2249 103 6 0 chr1 13483468 13483779 -229180574 - AluSq SINE Alu 0 313 1 189 0 0 0 chr1 13483821 13483842 -229180511 + (CCCCAG)n Simple_repeat Simple_repeat 1 21 0 227 303 15 0 chr1 13483986 13484052 -229180301 + MIR SINE MIR 81 147 -61 448 156 11 33 chr1 13534160 13534250 -229130103 + LTR26 LTR ERV1 514 601 -2 2285 128 0 0 chr1 13534339 13534644 -229129709 + AluSx SINE Alu 1 305 -7 2440 95 0 0 chr1 13534841 13535145 -229129208 + AluSx SINE Alu 1 304 -8 889 125 0 0 chr1 13535231 13535351 -229129002 + AluSg/x SINE Alu 169 288 -22 291 28 0 0 chr1 13535359 13535395 -229128958 + (TA)n Simple_repeat Simple_repeat 1 36 0 1585 131 62 39 chr1 13535396 13535655 -229128698 - AluJb SINE Alu -18 294 30 189 74 0 0 chr1 13535685 13535712 -229128641 + (CAA)n Simple_repeat Simple_repeat 2 28 0 222 37 0 0 chr1 13535755 13535782 -229128571 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 874 129 0 0 chr1 13535782 13535898 -229128455 - FLAM_C SINE Alu -27 116 1 363 275 73 118 chr1 13536036 13536183 -229128170 - L1ME4a LINE L1 -150 5971 5819 1766 162 17 10 chr1 13536183 13536485 -229127868 - AluJo SINE Alu -8 304 1 363 275 73 118 chr1 13536485 13536535 -229127818 - L1ME4a LINE L1 -302 5819 5768 2241 97 0 29 chr1 13536535 13536845 -229127508 - AluSg SINE Alu -5 305 5 363 275 73 118 chr1 13536845 13536933 -229127420 - L1ME4a LINE L1 -353 5768 5698 704 106 106 32 chr1 13536967 13537090 -229127263 - FLAM_C SINE Alu 0 133 2 2006 92 9 66 chr1 13537092 13537110 -229127243 - AluSx SINE Alu -13 299 282 399 41 0 0 chr1 13537110 13537159 -229127194 + (TG)n Simple_repeat Simple_repeat 2 50 0 2006 92 9 66 chr1 13537159 13537457 -229126896 - AluSx SINE Alu -30 282 1 2094 45 8 34 chr1 13539158 13539425 -229124928 - AluY SINE Alu -14 297 38 1284 155 79 54 chr1 13539486 13539554 -229124799 + MER33 DNA MER1_type 1 66 -2519 2416 93 0 7 chr1 13539554 13539855 -229124498 + AluSx SINE Alu 1 299 -13 1284 155 79 54 chr1 13539855 13540078 -229124275 + MER33 DNA MER1_type 66 303 -2282 2319 111 3 0 chr1 13540078 13540385 -229123968 - AluSq SINE Alu -5 308 1 1284 155 79 54 chr1 13540385 13540408 -229123945 + MER33 DNA MER1_type 303 324 0 180 111 0 0 chr1 13540523 13540550 -229123803 + (TAG)n Simple_repeat Simple_repeat 1 27 0 567 191 30 23 chr1 13540550 13540681 -229123672 - MIR SINE MIR -8 254 123 1364 138 167 0 chr1 13540714 13540953 -229123400 - AluSx SINE Alu -1 311 33 182 322 17 0 chr1 13540970 13541029 -229123324 - MIR SINE MIR -201 61 2 256 234 36 135 chr1 13541759 13541870 -229122483 + L2 LINE L2 3208 3307 -6 235 287 161 0 chr1 13542323 13542410 -229121943 - MIR SINE MIR -66 142 42 2281 102 10 0 chr1 13542524 13542818 -229121535 - AluSq SINE Alu -16 297 1 2295 89 0 80 chr1 13543054 13543392 -229120961 - AluSx SINE Alu -1 311 1 311 222 107 107 chr1 13543949 13544093 -229120260 + MIR SINE MIR 14 155 -64 356 336 26 9 chr1 13544112 13544228 -229120125 - L2 LINE L2 -2 3311 3194 2300 98 20 7 chr1 13544780 13545077 -229119276 - AluSx SINE Alu -11 301 1 273 169 51 0 chr1 13545172 13545231 -229119122 - HsTC2 DNA Tc2 -44 1854 1793 2358 117 0 0 chr1 13545236 13545543 -229118810 - AluSc SINE Alu -2 307 1 2066 132 4 0 chr1 13545596 13545877 -229118476 + AluJo SINE Alu 15 296 -16 262 226 0 0 chr1 13545886 13545939 -229118414 - HsTC2 DNA Tc2 -1843 55 3 519 248 102 13 chr1 13546042 13546201 -229118152 + MIR SINE MIR 19 188 -62 2320 116 0 0 chr1 13546206 13546500 -229117853 + AluSx SINE Alu 1 294 -18 677 307 153 9 chr1 13546855 13547380 -229116973 - L2 LINE L2 -75 3238 2625 803 261 185 8 chr1 13547404 13547760 -229116593 - LTR16B LTR ERVL -43 421 3 451 248 80 7 chr1 13547763 13547900 -229116453 - L2 LINE L2 -687 2627 2481 227 256 137 11 chr1 13547968 13548135 -229116218 + MIR SINE MIR 5 185 -77 277 277 31 0 chr1 13548144 13548209 -229116144 - MER2 DNA MER2_type -2 343 277 819 150 0 16 chr1 13548209 13548336 -229116017 + AluJb SINE Alu 1 125 -187 1142 154 14 5 chr1 13548408 13548616 -229115737 - MER2 DNA MER2_type -134 211 2 228 345 0 0 chr1 13548616 13548671 -229115682 + MIR SINE MIR 196 250 -12 210 292 56 11 chr1 13548731 13548820 -229115533 + MIR SINE MIR 111 203 -59 839 120 38 38 chr1 13548854 13548987 -229115366 + FLAM_C SINE Alu 1 133 0 2897 228 153 39 chr1 13549030 13550280 -229114073 - L2 LINE L2 -1 3312 1896 6562 53 17 44 chr1 13550280 13551238 -229113115 + SVA Other Other 464 1396 0 2129 102 0 4 chr1 13551428 13551702 -229112651 - AluSg SINE Alu -37 273 1 2249 109 7 3 chr1 13551814 13552116 -229112237 - AluSq SINE Alu -10 303 1 443 312 156 0 chr1 13553548 13553747 -229110606 + MIR SINE MIR 32 261 -1 1789 156 0 36 chr1 13554728 13555029 -229109324 - AluJo SINE Alu -22 290 1 2135 137 23 6 chr1 13555641 13555983 -229108370 - MER7A DNA MER2_type 0 346 1 2163 95 11 3 chr1 13555986 13556295 -229108058 - AluSx SINE Alu 0 311 1 2240 109 3 10 chr1 13556329 13556632 -229107721 - AluSp SINE Alu -9 304 4 711 191 66 0 chr1 13556632 13556768 -229107585 - FRAM SINE Alu -31 145 1 1917 129 26 23 chr1 13556934 13557236 -229107117 - AluJo SINE Alu -9 303 1 188 357 122 0 chr1 13557850 13557948 -229106405 + MIR3 SINE MIR 13 122 -86 1150 74 0 20 chr1 13558105 13558117 -229106236 - AluSq/x SINE Alu -168 145 134 2062 141 0 6 chr1 13558117 13558429 -229105924 - AluSx SINE Alu -2 310 1 1150 74 0 20 chr1 13558429 13558564 -229105789 - AluSq/x SINE Alu -179 134 1 794 233 39 17 chr1 13558687 13558867 -229105486 - MER91B DNA MER1_type -6 184 1 548 296 53 51 chr1 13559194 13559304 -229105049 + MIR SINE MIR 10 118 -144 2501 63 3 0 chr1 13559304 13559605 -229104748 - AluY SINE Alu -9 302 1 548 296 53 51 chr1 13559605 13559742 -229104611 + MIR SINE MIR 118 262 0 271 289 10 31 chr1 13559755 13559852 -229104501 + MIR SINE MIR 91 185 -77 2370 107 7 0 chr1 13560713 13561023 -229103330 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 13561422 13561450 -229102903 + AT_rich Low_complexity Low_complexity 1 28 0 2405 68 0 39 chr1 13561572 13561882 -229102471 + AluY SINE Alu 1 298 -13 2276 86 3 10 chr1 13563835 13564136 -229100217 + AluSx SINE Alu 1 299 -13 1997 157 3 10 chr1 13564207 13564519 -229099834 + AluJb SINE Alu 1 310 -2 384 224 47 0 chr1 13564549 13564634 -229099719 - L2 LINE L2 -1 3271 3183 2393 87 0 0 chr1 13564646 13564944 -229099409 - AluSc SINE Alu -11 298 1 930 216 0 0 chr1 13565148 13565315 -229099038 - AluSg/x SINE Alu -16 296 130 2123 123 17 0 chr1 13567751 13568053 -229096300 - AluSx SINE Alu -5 307 1 500 184 9 44 chr1 13568245 13568359 -229095994 + L2 LINE L2 3203 3312 -1 1440 196 57 4 chr1 13568630 13568910 -229095443 + AluJo SINE Alu 3 297 -15 1819 147 59 7 chr1 13570219 13570505 -229093848 - AluSx SINE Alu -9 303 3 436 155 12 0 chr1 13570553 13570637 -229093716 + L1MA6 LINE L1 6000 6084 -216 1047 144 69 0 chr1 13570667 13570827 -229093526 - AluJb SINE Alu -17 295 125 2288 110 0 0 chr1 13572157 13572447 -229091906 + AluSx SINE Alu 1 290 -22 1249 287 33 16 chr1 13572543 13572971 -229091382 - L1MC4 LINE L1 -518 7524 7090 247 311 36 60 chr1 13573011 13573178 -229091175 - L1MC4a LINE L1 -1368 6440 6278 2408 113 0 0 chr1 13573319 13573630 -229090723 - AluSx SINE Alu -1 311 1 222 37 0 0 chr1 13573705 13573732 -229090621 + (CGGGGG)n Simple_repeat Simple_repeat 4 30 0 1518 161 63 35 chr1 13573851 13574137 -229090216 - AluJb SINE Alu -18 294 1 419 244 102 84 chr1 13574138 13574285 -229090068 - L1MEd LINE L1 -2016 4199 4056 708 159 0 0 chr1 13574285 13574392 -229089961 - U6 snRNA snRNA 0 107 1 419 244 102 84 chr1 13574392 13574683 -229089670 - L1MEd LINE L1 -2159 4056 3753 285 254 182 47 chr1 13574697 13574924 -229089429 - L1MEd LINE L1 -2681 3534 3262 2304 123 0 0 chr1 13574924 13575226 -229089127 + AluSx SINE Alu 1 302 -10 285 254 182 47 chr1 13575226 13575273 -229089080 - L1MEd LINE L1 -2953 3262 3223 234 217 87 0 chr1 13575311 13575380 -229088973 - L1MEd LINE L1 -3108 3107 3033 1379 201 64 17 chr1 13575418 13575784 -229088569 - L1MB7 LINE L1 -2 6182 5801 1233 273 93 34 chr1 13575785 13576559 -229087794 - L1MEd LINE L1 -3187 3028 2235 2103 117 7 0 chr1 13576559 13576888 -229087465 - AluSq SINE Alu 0 331 1 1233 273 93 34 chr1 13576888 13577000 -229087353 - L1MEd LINE L1 -3980 2235 2131 723 236 151 75 chr1 13577061 13577763 -229086590 - L1MC5 LINE L1 -53 7908 7244 309 232 4 36 chr1 13577760 13577882 -229086471 - L1MC4a LINE L1 -632 7234 7075 * 307 143 0 20 chr1 13577899 13577948 -229086405 - MER4E LTR ERV1 -74 692 645 611 162 63 27 chr1 13578015 13578126 -229086227 + FLAM_C SINE Alu 2 116 -27 21 26 0 26 chr1 13578126 13578149 -229086204 + AT_rich Low_complexity Low_complexity 1 24 -14 2458 71 0 3 chr1 13578149 13578445 -229085908 + AluY SINE Alu 1 295 -16 21 26 0 26 chr1 13578445 13578460 -229085893 + AT_rich Low_complexity Low_complexity 24 38 0 420 268 6 57 chr1 13578460 13578617 -229085736 - L1MC5 LINE L1 -837 7124 6976 234 62 167 0 chr1 13578656 13578704 -229085649 + L1MC4a LINE L1 6565 6620 -1188 301 74 19 19 chr1 13578895 13578949 -229085404 + (TA)n Simple_repeat Simple_repeat 1 54 0 469 250 93 7 chr1 13579007 13579147 -229085206 - L1MC5 LINE L1 -1090 6871 6720 2213 128 0 0 chr1 13579351 13579647 -229084706 + AluSx SINE Alu 1 296 -16 1191 133 31 10 chr1 13579770 13579966 -229084387 - MLT1D LTR MaLR -2 503 304 34 0 0 0 chr1 13580242 13580276 -229084077 + AT_rich Low_complexity Low_complexity 1 34 0 315 253 37 36 chr1 13580376 13580584 -229083769 - L1MEd LINE L1 -4862 1343 1223 * 1220 283 83 26 chr1 13580555 13580585 -229083768 - L1MEd LINE L1 -5232 973 946 1936 154 6 31 chr1 13580585 13580904 -229083449 - AluSx SINE Alu -1 311 1 1220 283 83 26 chr1 13580904 13581403 -229082950 - L1MEd LINE L1 -5259 946 414 1843 171 3 23 chr1 13581416 13581720 -229082633 - AluJb SINE Alu -14 298 1 2402 92 0 0 chr1 13582203 13582496 -229081857 - AluSg SINE Alu -17 293 1 2249 64 0 64 chr1 13582935 13583249 -229081104 + AluY SINE Alu 1 294 -17 485 232 58 7 chr1 13583716 13583871 -229080482 - MIR SINE MIR 0 262 100 1481 140 37 37 chr1 13583974 13584245 -229080108 - AluJo SINE Alu -12 300 30 328 297 55 36 chr1 13586733 13586952 -229077401 - L2 LINE L2 -213 3059 2837 696 263 214 30 chr1 13588465 13588895 -229075458 - L2 LINE L2 -1 3312 2804 782 214 33 28 chr1 13588902 13588979 -229075374 + MER5A DNA MER1_type 6 81 -108 1632 187 7 11 chr1 13588979 13589263 -229075090 + AluJo SINE Alu 1 283 -29 782 214 33 28 chr1 13589263 13589367 -229074986 + MER5A DNA MER1_type 81 188 -1 817 260 72 8 chr1 13589368 13589618 -229074735 - L2 LINE L2 -514 2800 2535 1305 192 12 16 chr1 13589959 13590209 -229074144 - MER58B DNA MER1_type -50 291 43 1545 144 113 4 chr1 13590211 13590468 -229073885 + AluJb SINE Alu 1 285 -27 2149 128 0 0 chr1 13590478 13590767 -229073586 + AluSx SINE Alu 1 289 -23 431 136 9 0 chr1 13591754 13591840 -229072513 - MER5A DNA MER1_type -97 92 6 740 204 7 0 chr1 13592850 13592992 -229071361 + FLAM_C SINE Alu 1 143 0 1238 131 4 97 chr1 13592999 13593236 -229071117 + AluJo SINE Alu 86 300 -12 1906 160 3 10 chr1 13593245 13593551 -229070802 + AluJb SINE Alu 1 304 -8 1004 242 43 19 chr1 13594054 13594310 -229070043 - MIR SINE MIR 0 262 1 302 202 46 92 chr1 13594987 13595096 -229069257 - MIR SINE MIR -128 134 31 746 233 85 5 chr1 13595108 13595331 -229069022 - MIR SINE MIR -21 241 1 2075 210 78 45 chr1 13596396 13596957 -229067396 - MLT1G1 LTR MaLR -13 582 3 1906 131 25 0 chr1 13596960 13597242 -229067111 - AluSx SINE Alu -12 300 12 680 130 36 29 chr1 13597252 13597390 -229066963 - L1MA4 LINE L1 -3 6297 6159 2389 99 0 0 chr1 13597403 13597715 -229066638 - AluSx SINE Alu 0 312 1 1789 149 35 3 chr1 13597718 13598007 -229066346 - AluJb SINE Alu -6 306 9 22 0 0 0 chr1 13598008 13598030 -229066323 + AT_rich Low_complexity Low_complexity 1 22 0 933 113 7 21 chr1 13598030 13598172 -229066181 - L1PB4 LINE L1 -7 6149 6010 2206 105 27 0 chr1 13598204 13598498 -229065855 - AluY SINE Alu -9 302 1 1681 191 7 3 chr1 13598540 13598828 -229065525 + AluJo SINE Alu 1 289 -23 280 231 143 14 chr1 13598923 13599070 -229065283 + L1ME4a LINE L1 5956 6121 0 503 221 9 9 chr1 13599467 13599580 -229064773 - FLAM_A SINE Alu -11 131 19 2472 77 0 0 chr1 13599615 13599912 -229064441 - AluY SINE Alu -14 297 1 245 211 19 0 chr1 13600650 13600661 -229063692 + MER3 DNA MER1_type 36 47 -162 607 173 181 0 chr1 13600661 13600794 -229063559 - MER3 DNA MER1_type 0 209 53 2147 121 7 3 chr1 13602803 13603093 -229061260 + AluSx SINE Alu 1 291 -21 213 39 0 0 chr1 13603094 13603120 -229061233 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2368 98 3 0 chr1 13603767 13604073 -229060280 - AluSc SINE Alu -2 307 1 285 284 53 11 chr1 13606721 13606816 -229057537 - MER91B DNA MER1_type -55 135 37 1868 124 31 21 chr1 13607322 13607613 -229056740 - AluSq SINE Alu -17 296 3 2059 116 43 13 chr1 13607871 13608172 -229056181 - AluSx SINE Alu -2 310 1 549 286 40 27 chr1 13612653 13612877 -229051476 - LTR16A1 LTR ERVL -229 228 2 1080 331 28 46 chr1 13613026 13613676 -229050677 - HERV16 LTR ERVL -398 5366 4729 1243 305 26 22 chr1 13613757 13614365 -229049988 - HERV16 LTR ERVL -2310 3344 2712 1832 139 36 0 chr1 13614391 13614665 -229049688 + AluJo SINE Alu 1 284 -28 1226 133 11 0 chr1 13614734 13614914 -229049439 - MER20 DNA MER1_type -1 218 37 1536 296 39 69 chr1 13614914 13615194 -229049159 - HERV16 LTR ERVL -2304 2692 2405 2285 128 0 0 chr1 13615194 13615506 -229048847 + AluSx SINE Alu 1 312 0 1536 296 39 69 chr1 13615506 13615977 -229048376 - HERV16 LTR ERVL -2591 2405 1964 2509 73 0 0 chr1 13615994 13616294 -229048059 - AluY SINE Alu -11 300 1 1165 61 0 0 chr1 13616297 13616429 -229047924 - AluY SINE Alu -179 132 1 2195 280 69 14 chr1 13616454 13616726 -229047627 - HERV16 LTR ERVL -3053 1943 1687 2230 103 3 0 chr1 13616726 13617016 -229047337 + AluSp SINE Alu 2 292 -21 2195 280 69 14 chr1 13617016 13617430 -229046923 - HERV16 LTR ERVL -3309 1687 1297 1715 130 23 33 chr1 13617430 13617729 -229046624 - AluJb SINE Alu -16 296 1 2195 280 69 14 chr1 13617729 13618052 -229046301 - HERV16 LTR ERVL -3699 1297 832 1362 254 47 30 chr1 13618130 13618536 -229045817 - HERV16 LTR ERVL -4277 719 307 1044 166 0 0 chr1 13618570 13618739 -229045614 - AluJb SINE Alu 0 312 144 304 137 20 0 chr1 13618739 13618790 -229045563 - MER20 DNA MER1_type -14 205 154 2107 119 0 3 chr1 13618794 13619096 -229045257 - AluSx SINE Alu -9 303 3 1089 73 0 0 chr1 13619097 13619233 -229045120 - AluSq/x SINE Alu -176 136 1 476 168 9 75 chr1 13619233 13619340 -229045013 - MER20 DNA MER1_type -71 148 49 766 172 0 16 chr1 13619385 13619513 -229044840 - FLAM_C SINE Alu -7 126 1 428 318 99 0 chr1 13619513 13619705 -229044648 - HERV16 LTR ERVL -4707 289 79 493 297 16 0 chr1 13619811 13619939 -229044414 - LTR16A LTR ERVL -92 358 229 644 212 32 0 chr1 13619947 13620102 -229044251 - MIR SINE MIR -62 146 35 1454 205 13 3 chr1 13620117 13620415 -229043938 + AluJo SINE Alu 1 301 -11 996 206 83 29 chr1 13620436 13620713 -229043640 - MLT1J2 LTR MaLR -155 295 4 374 250 52 0 chr1 13621285 13621401 -229042952 - MER103 DNA DNA -32 134 13 2344 84 13 0 chr1 13621443 13621751 -229042602 + AluSx SINE Alu 1 312 0 459 322 35 0 chr1 13622470 13622641 -229041712 + MIR SINE MIR 35 211 -51 2144 113 3 0 chr1 13622647 13622948 -229041405 + AluSg SINE Alu 1 302 -8 500 64 81 27 chr1 13623502 13623757 -229040596 + (CACAC)n Simple_repeat Simple_repeat 1 268 0 578 24 97 18 chr1 13623795 13623960 -229040393 + (CA)n Simple_repeat Simple_repeat 2 179 0 693 130 42 14 chr1 13623978 13624423 -229039930 + (CA)n Simple_repeat Simple_repeat 1 457 0 195 255 149 0 chr1 13625124 13625218 -229039135 + MIR SINE MIR 44 151 -111 1240 114 0 6 chr1 13625431 13625607 -229038746 + AluSc SINE Alu 125 299 -10 1845 141 3 13 chr1 13625703 13626007 -229038346 + AluJb SINE Alu 2 302 -10 2247 112 0 0 chr1 13626009 13626321 -229038032 + AluSx SINE Alu 1 312 0 253 241 11 58 chr1 13626845 13626932 -229037421 - MIR SINE MIR -61 147 65 1115 141 11 0 chr1 13626958 13627135 -229037218 + L1MB4 LINE L1 6000 6178 -2 2311 57 0 0 chr1 13627142 13627459 -229036894 + AluY SINE Alu 1 317 0 324 296 47 30 chr1 13628247 13628416 -229035937 - L2 LINE L2 -62 3251 3080 782 211 6 12 chr1 13628516 13628677 -229035676 + MIR SINE MIR 17 176 -86 2347 80 0 0 chr1 13628693 13628992 -229035361 - AluSq SINE Alu -14 299 1 269 227 0 30 chr1 13629261 13629327 -229035026 - MLT1I LTR MaLR -265 144 81 1249 209 50 9 chr1 13629329 13629696 -229034657 - MLT1B LTR MaLR 0 390 46 192 40 0 0 chr1 13629777 13629802 -229034551 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1729 147 7 36 chr1 13629804 13630110 -229034243 - AluSx SINE Alu -15 297 1 437 218 20 0 chr1 13630216 13630317 -229034036 + L1MA10 LINE L1 6225 6327 -7 1029 184 84 27 chr1 13630390 13630651 -229033702 + L1MD3 LINE L1 7707 7982 -13 711 197 182 23 chr1 13630900 13631068 -229033285 + MER33 DNA MER1_type 17 157 -2428 1677 173 14 0 chr1 13631068 13631357 -229032996 + AluSx SINE Alu 1 293 -19 711 197 182 23 chr1 13631357 13631452 -229032901 + MER33 DNA MER1_type 157 322 -2 355 136 15 15 chr1 13631977 13632043 -229032310 - MLT1K LTR MaLR -327 261 196 278 233 29 68 chr1 13632360 13632463 -229031890 - MLT1K LTR MaLR -178 212 114 186 43 0 0 chr1 13632464 13632487 -229031866 + (T)n Simple_repeat Simple_repeat 1 23 0 1968 132 0 0 chr1 13632512 13632792 -229031561 - AluSx SINE Alu -32 280 1 2415 131 34 3 chr1 13632846 13633229 -229031124 - MSTA LTR MaLR 0 428 34 2228 84 7 10 chr1 13633230 13633528 -229030825 - AluSx SINE Alu -15 297 1 376 324 25 34 chr1 13634142 13634346 -229030007 + LTR16C LTR ERVL 288 489 -2 2281 108 0 0 chr1 13634425 13634732 -229029621 + AluSx SINE Alu 1 307 -5 183 220 0 0 chr1 13634941 13634991 -229029362 + CT-rich Low_complexity Low_complexity 1 50 0 248 219 29 139 chr1 13635344 13635395 -229028958 + MLT1I LTR MaLR 99 154 -255 2053 108 3 26 chr1 13635395 13635700 -229028653 + AluSx SINE Alu 1 298 -14 248 219 29 139 chr1 13635700 13635785 -229028568 + MLT1I LTR MaLR 154 220 -189 2181 113 0 0 chr1 13636247 13636547 -229027806 + AluSq SINE Alu 1 300 -13 182 309 0 0 chr1 13636724 13636779 -229027574 - MIR SINE MIR -69 139 85 4192 85 13 9 chr1 13637225 13637777 -229026576 + MER41A LTR ERV1 1 554 0 424 279 25 126 chr1 13637960 13638286 -229026067 + L2 LINE L2 2971 3263 -9 2141 119 0 0 chr1 13639217 13639512 -229024841 - AluSx SINE Alu -17 295 1 379 333 62 37 chr1 13639514 13639757 -229024596 - MIR SINE MIR -4 258 10 214 317 50 0 chr1 13639802 13639862 -229024491 + MIR SINE MIR 110 172 -90 2048 107 0 28 chr1 13640640 13640957 -229023396 + AluSx SINE Alu 1 309 0 2300 81 0 34 chr1 13641103 13641424 -229022929 + AluSx SINE Alu 3 312 0 1801 116 56 0 chr1 13643519 13643810 -229020543 + AluSx SINE Alu 1 306 0 416 321 79 5 chr1 13643822 13644012 -229020341 - MLT1L LTR MaLR -2 613 410 1893 151 17 3 chr1 13644119 13644417 -229019936 + AluSx SINE Alu 7 308 -4 268 296 10 0 chr1 13644420 13644518 -229019835 - MLT1L LTR MaLR -349 266 168 722 329 94 16 chr1 13644626 13645006 -229019347 - LTR16A1 LTR ERVL 0 481 82 2264 92 0 0 chr1 13645031 13645326 -229019027 + AluSx SINE Alu 1 295 -17 473 259 38 8 chr1 13645416 13645547 -229018806 + L2 LINE L2 3138 3272 0 302 281 27 82 chr1 13645922 13646068 -229018285 - MIR SINE MIR -46 216 79 660 257 79 1 chr1 13646274 13646618 -229017735 + MLT1I LTR MaLR 6 407 -2 1697 150 0 83 chr1 13646651 13646990 -229017363 + AluSx SINE Alu 1 311 -1 2133 120 10 0 chr1 13648115 13648424 -229015929 - AluSx SINE Alu 0 312 1 2528 167 68 107 chr1 13648703 13649214 -229015139 + L1MD2 LINE L1 5703 6233 -126 315 0 0 0 chr1 13649214 13649249 -229015104 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1611 159 26 4 chr1 13649250 13649520 -229014833 - AluJb SINE Alu -35 277 2 2528 167 68 107 chr1 13649520 13649687 -229014666 + L1MD2 LINE L1 6232 6356 -3 1927 161 3 0 chr1 13649931 13650241 -229014112 + AluSx SINE Alu 1 311 -1 761 176 14 9 chr1 13650241 13650463 -229013890 + GA-rich Low_complexity Low_complexity 1 223 0 187 196 22 22 chr1 13650494 13650540 -229013813 + MIR SINE MIR 63 108 -154 1901 82 0 4 chr1 13650913 13651177 -229013176 + AluSg SINE Alu 38 300 0 1840 144 31 0 chr1 13652064 13652356 -229011997 + AluSx SINE Alu 1 301 -11 269 322 62 62 chr1 13652679 13652856 -229011497 + L2 LINE L2 2914 3090 -182 767 230 0 17 chr1 13652997 13653175 -229011178 + MIR SINE MIR 50 224 -38 535 209 107 19 chr1 13653197 13653450 -229010903 + MER46C DNA MER2_type 4 317 -21 186 274 145 0 chr1 13653507 13653569 -229010784 + L2 LINE L2 3156 3226 -46 1868 136 3 23 chr1 13654005 13654307 -229010046 + AluSx SINE Alu 1 296 -16 203 206 0 63 chr1 13654656 13654719 -229009634 - MIR SINE MIR -118 144 86 194 152 0 22 chr1 13654901 13654947 -229009406 + CT-rich Low_complexity Low_complexity 5 49 0 450 106 0 0 chr1 13655463 13655529 -229008824 + MER117 DNA MER1_type 79 144 -53 931 290 97 35 chr1 13656108 13656331 -229008022 + L2 LINE L2 2852 3060 -253 1578 163 32 25 chr1 13656331 13656614 -229007739 - AluJb SINE Alu -22 290 6 931 290 97 35 chr1 13656614 13656825 -229007528 + L2 LINE L2 3060 3313 0 211 274 0 0 chr1 13656835 13656886 -229007467 - MIR SINE MIR -121 141 91 2053 116 20 0 chr1 13656899 13657192 -229007161 - AluSx SINE Alu -13 299 1 546 288 113 0 chr1 13657193 13657370 -229006983 - MIR SINE MIR -4 258 62 374 302 86 36 chr1 13657468 13657690 -229006663 - L3b LINE CR1 -55 1528 1296 2116 104 10 0 chr1 13658676 13658975 -229005378 - AluSx SINE Alu -10 302 1 399 247 0 0 chr1 13659256 13659414 -229004939 + (CA)n Simple_repeat Simple_repeat 1 158 0 924 142 13 0 chr1 13659701 13659928 -229004425 + GA-rich Low_complexity Low_complexity 1 230 0 208 265 54 42 chr1 13660325 13660491 -229003862 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 194 91 0 73 chr1 13660523 13660578 -229003775 + (TA)n Simple_repeat Simple_repeat 1 51 0 291 139 0 42 chr1 13660614 13660686 -229003667 + (TAATG)n Simple_repeat Simple_repeat 4 72 0 234 268 43 22 chr1 13660686 13660884 -229003469 + (TATATG)n Simple_repeat Simple_repeat 1 202 0 192 306 0 42 chr1 13661170 13661242 -229003111 - MIR SINE MIR -49 213 145 1396 161 92 22 chr1 13661330 13661627 -229002726 - AluJo SINE Alu 0 312 1 383 326 128 5 chr1 13661976 13662172 -229002181 + MIR SINE MIR 35 254 -8 202 232 0 18 chr1 13663285 13663341 -229001012 + CT-rich Low_complexity Low_complexity 2 56 0 2446 55 0 16 chr1 13663614 13663923 -229000430 - AluY SINE Alu -7 304 1 1062 286 99 40 chr1 13664320 13664831 -228999522 - L2 LINE L2 0 3313 2834 2291 80 3 3 chr1 13664831 13665131 -228999222 - AluSx SINE Alu -10 302 3 1978 144 0 13 chr1 13665133 13665446 -228998907 - AluJb SINE Alu -3 309 1 1062 286 99 40 chr1 13665446 13665511 -228998842 - L2 LINE L2 -479 2834 2774 1696 174 0 10 chr1 13665511 13665821 -228998532 - AluJo SINE Alu -5 307 1 1062 286 99 40 chr1 13665821 13666017 -228998336 - L2 LINE L2 -539 2774 2490 241 280 181 33 chr1 13666520 13666702 -228997651 - L2 LINE L2 -38 3275 3067 316 222 0 0 chr1 13666702 13666774 -228997579 + MIR SINE MIR 169 240 -22 1841 99 24 41 chr1 13666923 13667216 -228997137 - AluSx SINE Alu 0 312 25 184 193 105 18 chr1 13667243 13667300 -228997053 - MIR SINE MIR -131 77 16 2259 90 3 0 chr1 13667833 13668133 -228996220 + AluY SINE Alu 1 301 -10 385 239 97 8 chr1 13668360 13668494 -228995859 - L1MC2 LINE L1 0 6344 6199 2221 94 0 28 chr1 13669658 13669977 -228994376 + AluJb SINE Alu 1 310 -2 231 278 194 9 chr1 13670972 13671080 -228993273 - MIR SINE MIR -132 130 3 1180 69 0 0 chr1 13671114 13671259 -228993094 + AluSx SINE Alu 1 145 -167 1096 117 0 0 chr1 13671321 13671475 -228992878 + AluSx SINE Alu 144 297 -15 201 200 0 0 chr1 13671498 13671533 -228992820 + MIR SINE MIR 65 99 -163 503 273 53 0 chr1 13671574 13671724 -228992629 - MIR SINE MIR -55 207 50 2034 128 0 19 chr1 13672149 13672461 -228991892 - AluSx SINE Alu -6 306 1 454 261 72 20 chr1 13673355 13673508 -228990845 + L2 LINE L2 2923 3083 -189 814 146 0 0 chr1 13673556 13673679 -228990674 - FRAM SINE Alu -5 171 49 215 314 70 0 chr1 13673682 13673768 -228990585 - MIR SINE MIR -59 149 58 1987 111 11 0 chr1 13674429 13674709 -228989644 + AluSx SINE Alu 1 283 -29 2347 81 3 0 chr1 13675080 13675388 -228988965 + AluY SINE Alu 1 309 -2 201 274 14 41 chr1 13676062 13676135 -228988218 + L2 LINE L2 3156 3226 -46 198 0 0 0 chr1 13676162 13676184 -228988169 + (GA)n Simple_repeat Simple_repeat 2 23 0 624 284 89 91 chr1 13676193 13676418 -228987935 + L2 LINE L2 2920 3144 -169 2198 114 0 3 chr1 13676418 13676724 -228987629 - AluSx SINE Alu -7 305 1 1348 177 3 101 chr1 13676724 13677052 -228987301 - AluSx SINE Alu -16 296 1 624 284 89 91 chr1 13677052 13677220 -228987133 + L2 LINE L2 3142 3313 0 363 271 172 0 chr1 13678023 13678145 -228986208 + MIR SINE MIR 99 241 -21 302 295 93 71 chr1 13678565 13678748 -228985605 + MLT1K LTR MaLR 56 242 -346 243 322 0 0 chr1 13678790 13678849 -228985504 + MLT1K LTR MaLR 184 242 -346 213 175 0 0 chr1 13678853 13678893 -228985460 + L2 LINE L2 3184 3223 -90 472 257 24 129 chr1 13679022 13679232 -228985121 - MER91A DNA MER1_type 0 196 9 379 262 70 41 chr1 13679276 13679334 -228985019 + MLT1K LTR MaLR 408 463 -125 2300 55 24 0 chr1 13679334 13679624 -228984729 + AluY SINE Alu 1 297 -14 379 262 70 41 chr1 13679624 13679737 -228984616 + MLT1K LTR MaLR 463 584 -4 770 273 39 0 chr1 13679891 13680096 -228984257 + MIR SINE MIR 25 237 -25 296 229 43 0 chr1 13680157 13680227 -228984126 + MIR SINE MIR 120 192 -70 2115 103 0 0 chr1 13680227 13680532 -228983821 + AluSx SINE Alu 1 305 0 1783 173 0 16 chr1 13680549 13680862 -228983491 + AluJo SINE Alu 5 312 0 237 159 99 53 chr1 13681573 13681680 -228982673 + MIR SINE MIR 38 149 -113 301 192 13 90 chr1 13681992 13682070 -228982283 + MIR SINE MIR 86 150 -58 2466 78 0 0 chr1 13682248 13682557 -228981796 - AluSx SINE Alu -3 309 1 180 0 0 0 chr1 13682587 13682607 -228981746 + (CTG)n Simple_repeat Simple_repeat 1 20 0 672 181 0 23 chr1 13683296 13683392 -228980961 + L1MB3 LINE L1 6047 6141 -42 2367 97 0 0 chr1 13683392 13683703 -228980650 + AluSx SINE Alu 1 311 -1 672 181 0 23 chr1 13683703 13683739 -228980614 + L1MB3 LINE L1 6141 6176 -7 831 262 83 4 chr1 13683981 13684210 -228980143 + MIR SINE MIR 5 251 -11 326 184 0 147 chr1 13684547 13684595 -228979758 + MLT1F LTR MaLR 133 158 -409 1943 121 10 20 chr1 13684595 13684900 -228979453 + AluJo SINE Alu 1 302 -10 326 184 0 147 chr1 13684900 13684960 -228979393 + MLT1F LTR MaLR 158 225 -342 603 149 252 19 chr1 13684993 13685165 -228979188 + MLT1F LTR MaLR 308 567 -23 236 317 10 30 chr1 13685876 13685977 -228978376 + MIR SINE MIR 23 121 -87 1815 167 0 3 chr1 13686460 13686760 -228977593 + AluJb SINE Alu 6 304 -8 206 263 45 60 chr1 13687288 13687421 -228976932 + GA-rich Low_complexity Low_complexity 4 134 0 * 295 225 25 0 chr1 13687347 13687427 -228976926 + G-rich Low_complexity Low_complexity 1 82 0 821 163 257 86 chr1 13687590 13687994 -228976359 - MLT1F1 LTR MaLR -31 536 3 2560 103 27 11 chr1 13688024 13688393 -228975960 - THE1C LTR MaLR 0 375 1 778 248 54 46 chr1 13689307 13689744 -228974609 - MLT1H LTR MaLR 0 549 39 2162 105 0 19 chr1 13689981 13690294 -228974059 - AluSx SINE Alu -5 307 1 454 185 25 25 chr1 13690637 13690799 -228973554 - L1ME3A LINE L1 -5 6165 5942 9660 43 14 115 chr1 13691340 13692873 -228971480 + SVA Other Other 1 1378 -8 2318 83 0 3 chr1 13693305 13693607 -228970746 + AluY SINE Alu 2 302 -9 561 234 39 14 chr1 13693713 13693867 -228970486 + MLT1H LTR MaLR 409 549 0 1645 154 19 26 chr1 13694165 13694476 -228969877 + AluJo SINE Alu 3 311 -1 2111 126 0 0 chr1 13694628 13694930 -228969423 + AluSx SINE Alu 1 302 -10 1266 124 60 5 chr1 13695392 13695593 -228968760 + AluJo SINE Alu 88 299 -13 361 215 10 177 chr1 13696391 13696598 -228967755 + MIR SINE MIR 8 147 -61 2344 48 3 32 chr1 13696599 13696915 -228967438 + AluY SINE Alu 1 307 -4 2024 124 0 19 chr1 13697123 13697438 -228966915 + AluJb SINE Alu 3 311 -1 2197 95 3 0 chr1 13697447 13697741 -228966612 + AluSx SINE Alu 1 295 -17 276 185 19 0 chr1 13697761 13697815 -228966538 + LTR37A LTR ERV1 18 72 -354 268 200 0 0 chr1 13697807 13697857 -228966496 + AluJo/FLAM SINE Alu 78 127 -175 * 2266 98 7 0 chr1 13697857 13698154 -228966199 + AluSx SINE Alu 1 299 -13 1957 141 3 0 chr1 13699344 13699667 -228964686 - AluSx SINE Alu 0 324 1 2125 112 10 0 chr1 13699699 13700003 -228964350 + AluSq SINE Alu 5 311 -2 1744 148 41 71 chr1 13700475 13700839 -228963514 - MLT1A1 LTR MaLR -12 353 1 436 286 43 0 chr1 13700859 13700999 -228963354 + L2 LINE L2 3168 3313 0 200 262 0 49 chr1 13700971 13701032 -228963321 - L2 LINE L2 -10 3303 3246 * 1898 144 0 3 chr1 13701133 13701424 -228962929 + AluJb SINE Alu 1 290 -22 631 307 33 21 chr1 13701439 13701680 -228962673 - MIR SINE MIR -6 256 13 353 298 57 8 chr1 13701713 13701837 -228962516 + L2 LINE L2 3165 3294 -19 185 181 69 28 chr1 13702697 13702769 -228961584 + L2 LINE L2 2987 3061 -211 760 171 20 48 chr1 13703508 13703654 -228960699 + FLAM_C SINE Alu 2 143 0 711 278 44 10 chr1 13703674 13703879 -228960474 + MIR SINE MIR 51 262 0 184 227 0 0 chr1 13703893 13703937 -228960416 - L2 LINE L2 -3 3310 3267 2141 114 10 0 chr1 13703980 13704279 -228960074 + AluSq SINE Alu 1 302 -11 346 273 61 23 chr1 13704413 13704545 -228959808 - L2 LINE L2 0 3272 3136 408 20 0 0 chr1 13705235 13705284 -228959069 + (TG)n Simple_repeat Simple_repeat 2 50 0 651 249 32 125 chr1 13705441 13705648 -228958705 - L3 LINE CR1 -1 1576 1412 2272 105 0 3 chr1 13705648 13705962 -228958391 + AluSq SINE Alu 1 313 0 651 249 32 125 chr1 13705962 13706099 -228958254 - L3 LINE CR1 -165 1412 1264 306 294 119 8 chr1 13706298 13706323 -228958030 - L3 LINE CR1 -1058 519 498 2122 125 3 0 chr1 13706323 13706627 -228957726 - AluSx SINE Alu -7 305 1 306 294 119 8 chr1 13706627 13706727 -228957626 - L3 LINE CR1 -1079 498 380 197 310 58 23 chr1 13706805 13706892 -228957461 - L3 LINE CR1 -539 1038 949 1895 120 58 3 chr1 13706965 13707256 -228957097 - AluSx SINE Alu -5 307 1 1448 146 26 99 chr1 13707787 13707924 -228956429 + AluYb8 SINE Alu 1 146 -172 1984 103 0 4 chr1 13707924 13708195 -228956158 + AluSg SINE Alu 2 271 -39 1448 146 26 99 chr1 13708195 13708399 -228955954 + AluYb8 SINE Alu 146 317 -1 784 309 96 56 chr1 13708453 13709003 -228955350 - L3 LINE CR1 -687 890 319 1955 146 0 13 chr1 13709018 13709327 -228955026 - AluJo SINE Alu -7 305 1 2437 66 0 0 chr1 13710000 13710304 -228954049 - AluY SINE Alu -6 305 2 299 242 91 114 chr1 13712920 13713184 -228951169 + L2 LINE L2 2456 2713 -601 2016 132 3 0 chr1 13713193 13713497 -228950856 + AluSx SINE Alu 5 309 -3 430 342 35 35 chr1 13713680 13713937 -228950416 + L2 LINE L2 2973 3229 -43 2269 88 0 3 chr1 13714791 13715087 -228949266 + AluSp SINE Alu 1 295 -18 2095 104 7 13 chr1 13715087 13715394 -228948959 + AluSp SINE Alu 1 305 -8 2808 163 63 68 chr1 13715645 13716105 -228948248 + L1ME2 LINE L1 5433 6048 -286 189 0 0 0 chr1 13716105 13716126 -228948227 + (CATA)n Simple_repeat Simple_repeat 4 24 0 2808 163 63 68 chr1 13716126 13716411 -228947942 + L1ME2 LINE L1 6048 6333 -1 231 245 0 0 chr1 13716414 13716467 -228947886 + L2 LINE L2 2708 2760 -554 * 2572 245 84 35 chr1 13716462 13717595 -228946758 - L2 LINE L2 -3 3310 2127 204 296 5 108 chr1 13717665 13717878 -228946475 + L2 LINE L2 2869 3059 -254 1198 226 104 51 chr1 13717912 13718237 -228946116 + L2 LINE L2 1990 2347 -967 2118 103 27 0 chr1 13718237 13718538 -228945815 + AluSx SINE Alu 1 309 -3 1198 226 104 51 chr1 13718538 13718664 -228945689 + L2 LINE L2 2347 2465 -849 1962 137 0 3 chr1 13718789 13719088 -228945265 + AluSg SINE Alu 1 298 -12 1964 152 0 3 chr1 13719695 13720005 -228944348 + AluSx SINE Alu 1 309 -3 2076 107 13 0 chr1 13720009 13720308 -228944045 + AluSp SINE Alu 1 303 -10 1649 114 82 18 chr1 13720379 13720659 -228943694 + AluSx SINE Alu 1 298 -14 1983 140 20 0 chr1 13720697 13720997 -228943356 - AluSx SINE Alu -5 307 2 2112 124 0 0 chr1 13721273 13721571 -228942782 - AluSx SINE Alu -14 298 1 1802 233 85 53 chr1 13721622 13722205 -228942148 + L2 LINE L2 2445 3008 -305 1662 135 17 24 chr1 13722205 13722494 -228941859 - AluJo SINE Alu -25 287 1 1802 233 85 53 chr1 13722494 13722614 -228941739 + L2 LINE L2 3008 3123 -190 440 203 42 85 chr1 13722614 13722732 -228941621 - MER81 DNA DNA -1 113 1 1802 233 85 53 chr1 13722732 13722860 -228941493 + L2 LINE L2 3123 3295 -18 2188 112 0 0 chr1 13723045 13723350 -228941003 + AluSg SINE Alu 1 305 -5 2252 82 0 3 chr1 13723360 13723666 -228940687 + AluSc SINE Alu 5 309 0 280 250 30 0 chr1 13724761 13724861 -228939492 + G-rich Low_complexity Low_complexity 1 103 0 230 144 0 83 chr1 13724870 13725002 -228939351 + (CGGGG)n Simple_repeat Simple_repeat 2 122 0 281 139 0 0 chr1 13725200 13725243 -228939110 - L2 LINE L2 0 3272 3230 999 183 105 9 chr1 13725253 13725472 -228938881 - MER63C DNA MER1_type -224 706 467 2227 92 0 0 chr1 13725476 13725770 -228938583 + AluSx SINE Alu 5 298 -14 1245 108 0 0 chr1 13725770 13725946 -228938407 + AluSg/x SINE Alu 132 307 -3 1462 190 88 16 chr1 13725954 13726317 -228938036 - MER63C DNA MER1_type -488 442 54 299 120 8 265 chr1 13726315 13726365 -228937988 - MER45A DNA AcHobo -1403 178 117 * 608 165 66 16 chr1 13726365 13726410 -228937943 + FLAM_A SINE Alu 1 42 -260 2281 66 0 3 chr1 13726410 13726698 -228937655 - AluY SINE Alu -23 288 2 608 165 66 16 chr1 13726698 13726773 -228937580 + FLAM_A SINE Alu 42 127 -175 1453 176 40 50 chr1 13726773 13726899 -228937454 + AluJb SINE Alu 1 127 -185 2284 84 3 3 chr1 13726899 13727207 -228937146 + AluY SINE Alu 1 308 -3 1453 176 40 50 chr1 13727207 13727382 -228936971 + AluJb SINE Alu 127 299 -13 299 120 8 265 chr1 13727382 13727402 -228936951 - MER45A DNA AcHobo -1463 118 145 2254 78 3 22 chr1 13727402 13727721 -228936632 + AluSp SINE Alu 1 313 0 299 120 8 265 chr1 13727721 13727765 -228936588 - MER45A DNA AcHobo -1435 146 92 302 292 158 0 chr1 13727923 13728043 -228936310 + MIR SINE MIR 49 187 -75 * 371 256 31 81 chr1 13728041 13728084 -228936269 - MIR SINE MIR 0 262 218 2008 109 35 0 chr1 13728084 13728369 -228935984 - AluSx SINE Alu -17 295 1 371 256 31 81 chr1 13728369 13728485 -228935868 - MIR SINE MIR -44 218 111 240 222 0 0 chr1 13728565 13728610 -228935743 + MIR SINE MIR 218 262 0 1819 61 0 0 chr1 13728640 13728868 -228935485 + L1PA6 LINE L1 5927 6154 0 1046 248 81 26 chr1 13729009 13729319 -228935034 + L1MC4a LINE L1 5523 5849 -1959 2458 145 89 39 chr1 13729321 13729358 -228934995 + LTR26 LTR ERV1 1 35 -568 2025 86 48 14 chr1 13729358 13729494 -228934859 + AluSx SINE Alu 1 131 -181 1603 132 21 103 chr1 13729494 13729834 -228934519 + AluYb8 SINE Alu 1 312 -6 2025 86 48 14 chr1 13729834 13729987 -228934366 + AluSx SINE Alu 131 300 -12 2458 145 89 39 chr1 13729987 13730362 -228933991 + LTR26 LTR ERV1 35 444 -159 2100 111 0 0 chr1 13730362 13730677 -228933676 + AluSg SINE Alu 1 315 0 2458 145 89 39 chr1 13730677 13730721 -228933632 + LTR26 LTR ERV1 444 484 -119 4330 135 21 21 chr1 13730721 13731432 -228932921 + MER50 LTR ERV1 1 711 -23 656 153 8 32 chr1 13731433 13731557 -228932796 + LTR26 LTR ERV1 481 601 -2 2409 57 0 31 chr1 13733101 13733419 -228930934 - AluSx SINE Alu -2 310 3 2037 107 0 28 chr1 13733565 13733882 -228930471 - AluSx SINE Alu 0 309 1 25448 75 4 7 chr1 13734351 13734464 -228929889 - L1P LINE L1 -2776 3370 3258 2274 68 31 0 chr1 13734464 13734756 -228929597 - AluY SINE Alu -10 301 1 25448 75 4 7 chr1 13734756 13738017 -228926336 - L1P LINE L1 -2888 3258 4 865 281 14 0 chr1 13738079 13738296 -228926057 - MIR SINE MIR -14 248 29 2126 101 3 0 chr1 13738420 13738744 -228925609 + AluSp SINE Alu 1 325 0 7485 39 3 1 chr1 13739167 13740471 -228923882 + L1PA5 LINE L1 4850 6154 0 1717 86 4 4 chr1 13741000 13741234 -228923119 + AluY SINE Alu 1 234 -77 405 52 35 0 chr1 13741337 13741395 -228922958 + AluSc SINE Alu 236 295 -14 1855 152 24 0 chr1 13741972 13742262 -228922091 + AluJo SINE Alu 1 297 -15 442 147 0 13 chr1 13742887 13742962 -228921391 - HsTC2 DNA Tc2 -1824 74 1 316 226 145 8 chr1 13744127 13744251 -228920102 + L1ME4a LINE L1 5803 5943 -178 2324 122 0 48 chr1 13745192 13745546 -228918807 + MER1B DNA MER1_type 1 337 0 2132 101 0 7 chr1 13746696 13747002 -228917351 - AluY SINE Alu -7 304 1 231 36 0 0 chr1 13747173 13747201 -228917152 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 1440 143 13 101 chr1 13747201 13747508 -228916845 - AluJb SINE Alu -32 280 1 201 330 175 19 chr1 13747703 13747909 -228916444 - L2 LINE L2 -220 3052 2815 1508 186 13 10 chr1 13748043 13748350 -228916003 - AluJo SINE Alu -4 308 1 461 274 78 34 chr1 13748466 13748645 -228915708 + MIR SINE MIR 3 189 -73 546 295 63 0 chr1 13748645 13748835 -228915518 + L1ME3A LINE L1 4658 4859 -1287 2468 259 75 50 chr1 13749004 13749370 -228914983 + L1ME3A LINE L1 4942 5297 -873 825 181 0 0 chr1 13749370 13749503 -228914850 + FLAM_A SINE Alu 1 133 0 2468 259 75 50 chr1 13749503 13750304 -228914049 + L1ME3A LINE L1 5297 6157 -13 239 356 44 0 chr1 13750304 13750394 -228913959 + MIR SINE MIR 167 260 -2 374 351 31 51 chr1 13750432 13750568 -228913785 + L2 LINE L2 3022 3159 -154 2181 97 3 3 chr1 13750568 13750867 -228913486 - AluSp SINE Alu -14 299 1 374 351 31 51 chr1 13750867 13751023 -228913330 + L2 LINE L2 3159 3308 -5 253 215 92 0 chr1 13751185 13751250 -228913103 - MIR3 SINE MIR -1 207 137 989 184 0 0 chr1 13751251 13751425 -228912928 - AluSg/x SINE Alu -3 307 134 872 164 25 6 chr1 13751664 13751823 -228912530 + AluJo SINE Alu 33 194 -118 2485 51 0 19 chr1 13751954 13752269 -228912084 + AluY SINE Alu 1 309 -2 474 308 104 46 chr1 13752355 13752615 -228911738 - L2 LINE L2 -1 3271 2997 491 229 38 105 chr1 13752622 13752832 -228911521 - MER39 LTR ERV1 -262 445 250 310 265 137 20 chr1 13752807 13752909 -228911444 - MER34 LTR ERV1 -428 114 1 * 410 256 38 23 chr1 13752943 13753076 -228911277 - L1MC4a LINE L1 -1909 5899 5765 1058 177 0 10 chr1 13753194 13753386 -228910967 - AluJo SINE Alu -122 190 1 1042 193 9 32 chr1 13753386 13753604 -228910749 - AluJo SINE Alu -15 297 85 32 75 0 0 chr1 13753791 13753858 -228910495 + AT_rich Low_complexity Low_complexity 1 67 0 671 153 0 0 chr1 13753859 13753957 -228910396 + AluJ/FLAM SINE Alu 2 99 -213 279 0 0 0 chr1 13754050 13754081 -228910272 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1152 153 39 10 chr1 13754107 13754150 -228910203 - MER3 DNA MER1_type 0 209 169 2132 135 0 0 chr1 13754150 13754462 -228909891 - AluSx SINE Alu 0 312 1 1152 153 39 10 chr1 13754462 13754621 -228909732 - MER3 DNA MER1_type -40 169 1 2034 112 0 0 chr1 13755401 13755687 -228908666 + AluSx SINE Alu 1 286 -26 644 161 89 0 chr1 13756073 13756185 -228908168 + FLAM_C SINE Alu 1 122 -21 1824 170 17 0 chr1 13756252 13756546 -228907807 + AluJb SINE Alu 1 299 -13 934 226 9 22 chr1 13757084 13757310 -228907043 - MER58A DNA MER1_type 0 224 2 262 237 0 0 chr1 13757743 13757802 -228906551 + T-rich Low_complexity Low_complexity 1 59 0 1577 177 6 29 chr1 13758567 13758706 -228905647 + AluJo SINE Alu 1 142 -170 2555 114 5 13 chr1 13758706 13759084 -228905269 - THE1C LTR MaLR 0 375 1 1577 177 6 29 chr1 13759084 13759255 -228905098 + AluJo SINE Alu 142 304 -8 27 49 0 0 chr1 13759255 13759296 -228905057 + AT_rich Low_complexity Low_complexity 1 41 0 219 36 0 0 chr1 13760874 13760902 -228903451 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2220 112 0 6 chr1 13761352 13761665 -228902688 - AluSx SINE Alu -1 311 1 542 160 198 0 chr1 13762026 13762132 -228902221 + FLAM_C SINE Alu 1 127 -16 2033 104 24 0 chr1 13762168 13762455 -228901898 + AluSp SINE Alu 3 296 -17 528 139 139 20 chr1 13762851 13762952 -228901401 - FLAM_A SINE Alu -8 134 22 1622 96 42 4 chr1 13763860 13764100 -228900253 - AluSq SINE Alu -14 299 51 2314 100 3 0 chr1 13764120 13764431 -228899922 - AluSx SINE Alu 0 312 1 181 247 49 49 chr1 13765240 13765321 -228899032 + L3 LINE CR1 589 669 -908 223 327 44 68 chr1 13766453 13766704 -228897649 - L2 LINE L2 -87 3185 2941 283 240 0 13 chr1 13766750 13766825 -228897528 + MER116 DNA Mariner 5 78 -2 1440 174 0 7 chr1 13767012 13767191 -228897162 - AluJb SINE Alu -8 304 126 7432 95 17 22 chr1 13767191 13768268 -228896085 - MER11C LTR ERVK 0 1071 1 1440 174 0 7 chr1 13768268 13768358 -228895995 - AluJb SINE Alu -186 126 37 2041 117 7 0 chr1 13768405 13768696 -228895657 + AluSx SINE Alu 1 293 -19 1058 98 20 0 chr1 13768697 13768850 -228895503 + AluSg/x SINE Alu 137 292 -20 1685 178 43 4 chr1 13769255 13769536 -228894817 + AluJo SINE Alu 1 292 -20 1084 113 256 3 chr1 13769543 13769796 -228894557 + Tigger2 DNA MER2_type 2405 2717 -1 2008 170 0 0 chr1 13769805 13770116 -228894237 - AluJb SINE Alu -1 311 1 2379 93 3 7 chr1 13770144 13770446 -228893907 + AluSg SINE Alu 1 301 -9 390 321 88 16 chr1 13770450 13770643 -228893710 + MIR SINE MIR 29 235 -27 566 285 58 47 chr1 13770947 13771308 -228893045 - L2 LINE L2 -1423 1891 1527 435 201 188 26 chr1 13771313 13771415 -228892938 + AluJo SINE Alu 2 86 -226 1922 92 92 42 chr1 13771415 13771699 -228892654 + AluSx SINE Alu 1 298 -14 2329 82 3 13 chr1 13771701 13772004 -228892349 + AluSg SINE Alu 1 300 -10 435 201 188 26 chr1 13772004 13772052 -228892301 + AluJo SINE Alu 86 180 -132 2162 104 38 0 chr1 13772084 13772371 -228891982 - AluSx SINE Alu -14 298 1 731 153 127 25 chr1 13772396 13772553 -228891800 - AluJb SINE Alu -25 287 115 477 178 89 0 chr1 13772585 13772686 -228891667 + FLAM_A SINE Alu 11 120 -22 28 71 0 0 chr1 13772971 13773027 -228891326 + GC_rich Low_complexity Low_complexity 1 56 0 617 267 58 26 chr1 13774343 13774534 -228889819 - MIR SINE MIR -21 241 45 204 317 149 31 chr1 13774531 13774692 -228889661 + L2 LINE L2 3129 3308 -5 * 2538 68 0 0 chr1 13775203 13775499 -228888854 - AluY SINE Alu -15 296 1 1998 108 70 3 chr1 13775540 13775712 -228888641 - AluSg SINE Alu -4 306 106 2107 117 7 23 chr1 13775712 13776012 -228888341 - AluSg SINE Alu -15 295 1 1998 108 70 3 chr1 13776012 13776126 -228888227 - AluSg SINE Alu -204 106 1 1918 170 0 16 chr1 13776165 13776482 -228887871 + AluJo SINE Alu 1 312 0 1461 127 10 0 chr1 13776493 13776698 -228887655 + AluSx SINE Alu 1 207 -105 1780 133 8 0 chr1 13776698 13776953 -228887400 + AluSx SINE Alu 41 297 -15 2597 62 0 3 chr1 13777204 13777510 -228886843 - AluY SINE Alu -6 305 1 2141 126 3 0 chr1 13777709 13778002 -228886351 - AluSq SINE Alu -9 304 11 2208 105 14 3 chr1 13778042 13778338 -228886015 + AluSx SINE Alu 1 299 -13 2159 121 0 20 chr1 13778341 13778646 -228885707 + AluSq SINE Alu 1 299 -14 801 165 0 8 chr1 13778664 13778791 -228885562 + FLAM_C SINE Alu 1 126 -17 1703 171 0 48 chr1 13778842 13779157 -228885196 - AluJo SINE Alu -11 301 2 560 283 125 47 chr1 13779371 13779714 -228884639 - L3 LINE CR1 -278 1299 930 21 0 0 0 chr1 13779846 13779867 -228884486 + AT_rich Low_complexity Low_complexity 1 21 0 1415 165 65 62 chr1 13779897 13780123 -228884230 - MER47A DNA MER2_type -1981 342 118 2284 122 0 3 chr1 13780123 13780426 -228883927 + AluSx SINE Alu 1 302 -10 2351 105 7 0 chr1 13780429 13780725 -228883628 + AluSc SINE Alu 1 298 -11 1415 165 65 62 chr1 13780725 13780834 -228883519 - MER47A DNA MER2_type -2206 117 2 1917 90 3 109 chr1 13780956 13781277 -228883076 + AluSg1 SINE Alu 5 291 -18 869 180 0 0 chr1 13782056 13782195 -228882158 + AluJb SINE Alu 167 305 -7 261 309 0 12 chr1 13782557 13782638 -228881715 - MIR SINE MIR -58 204 125 2527 83 0 0 chr1 13782644 13782945 -228881408 + AluSx SINE Alu 1 301 -11 1500 164 77 25 chr1 13782992 13783266 -228881087 - AluJo SINE Alu -24 288 1 2224 111 3 37 chr1 13783290 13783614 -228880739 - AluSq SINE Alu 0 313 1 1629 170 29 36 chr1 13783697 13784003 -228880350 - AluJo SINE Alu -8 304 1 4041 20 0 0 chr1 13785892 13786397 -228877956 - L1PA3 LINE L1 -2928 3218 2714 17194 30 4 3 chr1 13786397 13789318 -228875035 + L1PA3 LINE L1 3225 6155 0 2408 99 10 0 chr1 13789356 13789659 -228874694 - AluSp SINE Alu -7 306 1 1690 135 12 4 chr1 13789693 13789945 -228874408 + AluJb SINE Alu 1 254 -58 180 0 0 0 chr1 13790594 13790614 -228873739 + (TG)n Simple_repeat Simple_repeat 1 20 0 2494 72 13 0 chr1 13790837 13791141 -228873212 - AluSp SINE Alu -5 308 1 530 287 111 0 chr1 13791241 13791422 -228872931 - MIR SINE MIR -15 247 47 378 0 0 0 chr1 13792336 13792378 -228871975 + (TG)n Simple_repeat Simple_repeat 2 43 0 2463 71 3 3 chr1 13793248 13793545 -228870808 + AluSx SINE Alu 1 297 -15 2364 94 10 0 chr1 13793584 13793893 -228870460 - AluSx SINE Alu 0 312 1 1608 159 40 40 chr1 13794344 13794385 -228869968 - AluJo SINE Alu 0 312 272 2790 14 0 0 chr1 13794385 13794681 -228869672 + AluYa5 SINE Alu 1 296 -15 1608 159 40 40 chr1 13794681 13794941 -228869412 - AluJo SINE Alu -39 273 11 250 268 122 16 chr1 13795093 13795216 -228869137 - L2 LINE L2 0 3313 3178 2186 132 3 0 chr1 13795651 13795954 -228868399 + AluSq SINE Alu 1 304 -9 1083 166 12 0 chr1 13796582 13796745 -228867608 - AluJb SINE Alu -16 296 132 2263 117 7 3 chr1 13796748 13797057 -228867296 - AluSq SINE Alu -2 311 2 1531 140 0 13 chr1 13797058 13797287 -228867066 - AluJb SINE Alu 0 312 87 358 333 60 25 chr1 13797301 13797502 -228866851 + L3 LINE CR1 845 1052 -525 2064 98 54 0 chr1 13797623 13797900 -228866453 + AluSx SINE Alu 1 292 -20 443 285 70 19 chr1 13797934 13798092 -228866261 + MIR SINE MIR 18 183 -79 2352 96 0 13 chr1 13798225 13798528 -228865825 + AluSx SINE Alu 1 299 -13 2266 99 41 0 chr1 13799041 13799334 -228865019 - AluSx SINE Alu -7 305 1 2338 84 7 0 chr1 13799510 13799806 -228864547 + AluY SINE Alu 1 298 -13 333 215 0 0 chr1 13799846 13799925 -228864428 - L1ME3 LINE L1 0 6162 6084 482 296 95 0 chr1 13800398 13800577 -228863776 + MIR SINE MIR 46 241 -21 1065 262 154 11 chr1 13801131 13801657 -228862696 - L2 LINE L2 -339 2975 2375 1313 178 4 21 chr1 13802398 13802634 -228861719 - AluJo SINE Alu -8 304 73 1674 162 12 58 chr1 13802661 13802988 -228861365 - AluJo SINE Alu 0 312 1 180 77 0 0 chr1 13805313 13805339 -228859014 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 2073 117 0 18 chr1 13805344 13805489 -228858864 - AluSx SINE Alu -36 276 137 2551 53 0 3 chr1 13805489 13805792 -228858561 - AluY SINE Alu -9 302 1 2073 117 0 18 chr1 13805792 13805927 -228858426 - AluSx SINE Alu -175 137 1 2251 123 0 0 chr1 13806461 13806770 -228857583 + AluY SINE Alu 1 309 -2 559 135 0 0 chr1 13806805 13806894 -228857459 - AluJo SINE Alu -15 297 209 974 164 13 6 chr1 13806894 13807053 -228857300 - AluJo SINE Alu -152 160 1 1168 231 143 24 chr1 13807565 13808019 -228856334 - MLT1J LTR MaLR 0 511 4 2403 87 0 19 chr1 13808060 13808370 -228855983 - AluSq SINE Alu -9 304 1 2232 92 44 3 chr1 13808382 13808675 -228855678 - AluSq SINE Alu -8 305 1 2156 126 0 0 chr1 13808946 13809268 -228855085 - AluSx SINE Alu 0 322 1 227 53 0 26 chr1 13810104 13810142 -228854211 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2221 132 3 0 chr1 13810159 13810470 -228853883 - AluSx SINE Alu 0 312 1 213 333 48 24 chr1 13811063 13811147 -228853206 - L2 LINE L2 -84 3188 3103 784 134 16 0 chr1 13811327 13811454 -228852899 - FLAM_C SINE Alu -3 130 2 2268 82 0 26 chr1 13811464 13811767 -228852586 - AluSc SINE Alu -12 297 3 192 75 38 57 chr1 13812671 13812724 -228851629 + (CCCGG)n Simple_repeat Simple_repeat 3 54 0 30 45 0 0 chr1 13812851 13812895 -228851458 + GC_rich Low_complexity Low_complexity 1 44 0 47 78 0 0 chr1 13812940 13813043 -228851310 + GC_rich Low_complexity Low_complexity 1 103 0 2380 92 3 3 chr1 13814358 13814663 -228849690 - AluSp SINE Alu -8 305 1 452 294 62 59 chr1 13814736 13814863 -228849490 - L2 LINE L2 -7 3265 3140 2237 125 0 0 chr1 13814863 13815166 -228849187 + AluSx SINE Alu 1 303 -9 452 294 62 59 chr1 13815166 13815361 -228848992 - L2 LINE L2 -132 3140 2942 1062 126 248 4 chr1 13815380 13815618 -228848735 + AluY SINE Alu 1 296 -5 1616 160 78 3 chr1 13815785 13816067 -228848286 + AluJo SINE Alu 1 303 -9 209 143 0 24 chr1 13816742 13816784 -228847569 + MIR SINE MIR 47 87 -175 189 107 0 0 chr1 13816954 13816982 -228847371 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 2447 71 0 3 chr1 13817228 13817524 -228846829 + AluY SINE Alu 2 296 -15 1908 101 73 31 chr1 13817533 13817821 -228846532 + AluSx SINE Alu 1 300 -12 315 247 75 34 chr1 13820542 13820688 -228843665 + MER21B LTR ERV1 98 249 -614 2002 128 29 20 chr1 13820716 13820928 -228843425 + AluSx SINE Alu 3 220 -92 4938 77 25 9 chr1 13820928 13821608 -228842745 + LTR8 LTR ERV1 1 691 0 2002 128 29 20 chr1 13821608 13821701 -228842652 + AluSx SINE Alu 220 311 -1 204 219 0 0 chr1 13821707 13821748 -228842605 + A-rich Low_complexity Low_complexity 3 43 0 549 131 0 0 chr1 13821751 13821835 -228842518 + LTR26E LTR ERV1 42 125 -497 1705 89 0 0 chr1 13821875 13822089 -228842264 + AluSq SINE Alu 5 218 -95 497 90 26 0 chr1 13822110 13822188 -228842165 - AluS SINE Alu -220 93 14 1834 73 17 0 chr1 13822192 13822424 -228841929 + AluSp SINE Alu 70 305 -8 297 119 0 0 chr1 13822427 13822469 -228841884 - Alu SINE Alu -260 42 1 508 269 66 5 chr1 13822470 13822667 -228841686 - HAL1 LINE L1 -413 2094 1886 593 272 152 18 chr1 13822726 13822924 -228841429 + LTR8 LTR ERV1 1 232 -459 2509 55 7 0 chr1 13822924 13823214 -228841139 - AluY SINE Alu -19 292 1 593 272 152 18 chr1 13823214 13823232 -228841121 + LTR8 LTR ERV1 232 246 -445 201 147 0 0 chr1 13823257 13823291 -228841062 + (T)n Simple_repeat Simple_repeat 1 34 0 2138 108 7 0 chr1 13823304 13823581 -228840772 + AluSg SINE Alu 1 279 -31 1442 106 45 0 chr1 13823582 13823781 -228840572 - AluSg/x SINE Alu -3 309 102 330 269 75 45 chr1 13823790 13823991 -228840362 - HAL1 LINE L1 -1013 1494 1288 1643 188 0 34 chr1 13824009 13824307 -228840046 - AluJo SINE Alu -24 288 1 1836 73 5 0 chr1 13824333 13824553 -228839800 + AluSp SINE Alu 1 221 -92 839 107 16 8 chr1 13824554 13824676 -228839677 + FLAM_C SINE Alu 11 133 -10 324 239 58 51 chr1 13824709 13824818 -228839535 + HAL1 LINE L1 95 207 -2300 2408 109 0 0 chr1 13824818 13825122 -228839231 - AluSg SINE Alu -6 304 1 324 239 58 51 chr1 13825122 13825150 -228839203 + HAL1 LINE L1 207 233 -2274 1869 145 25 0 chr1 13825207 13825490 -228838863 + AluSx SINE Alu 1 290 -22 2227 120 0 0 chr1 13826629 13826930 -228837423 + AluSx SINE Alu 1 301 -11 290 291 12 12 chr1 13826993 13827079 -228837274 + MIR SINE MIR 38 123 -139 482 239 4 4 chr1 13830239 13830474 -228833879 + (TCCA)n Simple_repeat Simple_repeat 1 235 0 766 195 2 7 chr1 13830499 13830911 -228833442 + (TCCA)n Simple_repeat Simple_repeat 1 410 0 357 131 0 0 chr1 13830934 13830995 -228833358 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 741 194 0 0 chr1 13831019 13831199 -228833154 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 248 132 26 0 chr1 13831311 13831349 -228833004 - Alu SINE Alu -262 39 1 749 185 155 22 chr1 13831364 13831596 -228832757 + MER2 DNA MER2_type 83 345 0 194 28 0 83 chr1 13831604 13831640 -228832713 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2275 98 7 3 chr1 13832901 13833196 -228831157 - AluSc SINE Alu -13 296 1 2403 89 0 3 chr1 13833199 13833502 -228830851 - AluSg SINE Alu -7 303 2 36 53 0 0 chr1 13833903 13833960 -228830393 + AT_rich Low_complexity Low_complexity 1 57 0 932 166 72 17 chr1 13833960 13834141 -228830212 - AluJb SINE Alu -17 295 105 1511 208 10 3 chr1 13834171 13834460 -228829893 - AluJo SINE Alu -18 294 4 2393 105 0 6 chr1 13834468 13834783 -228829570 - AluSq SINE Alu 0 313 1 665 194 0 50 chr1 13834786 13834925 -228829428 - AluJo/FLAM SINE Alu -170 132 1 995 151 16 43 chr1 13834925 13835110 -228829243 - AluJo SINE Alu -20 292 113 538 291 158 65 chr1 13835598 13835996 -228828357 + LTR33 LTR ERVL 38 472 -49 2062 136 7 7 chr1 13836144 13836446 -228827907 + AluSx SINE Alu 1 302 -10 2412 104 3 0 chr1 13836457 13836764 -228827589 + AluSq SINE Alu 1 308 -5 581 192 14 55 chr1 13840562 13840708 -228823645 + MIR SINE MIR 111 250 -12 222 231 0 0 chr1 13841305 13841370 -228822983 + (TGG)n Simple_repeat Simple_repeat 2 66 0 284 227 136 0 chr1 13842659 13842747 -228821606 - L2 LINE L2 -1 3271 3172 524 254 35 56 chr1 13844280 13844477 -228819876 - MIR SINE MIR -5 257 65 1006 138 141 145 chr1 13844480 13844770 -228819583 + AluJo SINE Alu 6 294 -18 2451 80 10 0 chr1 13846249 13846550 -228817803 + AluSx SINE Alu 1 304 -8 2446 96 0 0 chr1 13846550 13846853 -228817500 + AluSx SINE Alu 1 303 -9 245 211 84 0 chr1 13846935 13847006 -228817347 - L2 LINE L2 -253 3060 2984 1062 126 248 4 chr1 13847067 13847305 -228817048 + AluY SINE Alu 1 296 -5 1616 160 78 3 chr1 13847472 13847754 -228816599 + AluJo SINE Alu 1 303 -9 209 143 0 24 chr1 13848429 13848471 -228815882 + MIR SINE MIR 47 87 -175 189 107 0 0 chr1 13848641 13848669 -228815684 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 186 242 129 0 chr1 13849499 13849561 -228814792 - MIR SINE MIR -123 139 70 2295 94 0 0 chr1 13851329 13851617 -228812736 - AluSg SINE Alu -22 288 1 889 144 8 0 chr1 13851619 13851751 -228812602 - AluSq/x SINE Alu -179 133 1 1577 136 136 20 chr1 13851873 13852175 -228812178 - MER1B DNA MER1_type 0 337 1 544 209 104 8 chr1 13852223 13852357 -228811996 + MIR SINE MIR 50 196 -66 1878 154 18 0 chr1 13852745 13853025 -228811328 - AluJb SINE Alu -11 301 17 2016 121 0 4 chr1 13853025 13853297 -228811056 - AluSx SINE Alu -41 271 1 21 0 0 0 chr1 13853305 13853326 -228811027 + AT_rich Low_complexity Low_complexity 1 21 0 1217 111 6 6 chr1 13853511 13853691 -228810662 + AluY SINE Alu 132 311 0 356 153 17 0 chr1 13853893 13853952 -228810401 + AluS SINE Alu 1 60 -242 2171 110 0 27 chr1 13853957 13854257 -228810096 - AluSx SINE Alu -20 292 1 879 150 72 6 chr1 13855846 13856013 -228808340 - MER5B DNA MER1_type 0 178 1 1696 118 83 55 chr1 13857039 13857328 -228807025 - AluSx SINE Alu -15 297 1 1081 104 0 0 chr1 13857328 13857463 -228806890 - AluSq/x SINE Alu -178 135 1 420 270 149 22 chr1 13860437 13860688 -228803665 + MLT1J LTR MaLR 235 458 -53 378 257 0 35 chr1 13860704 13860817 -228803536 + MER21B LTR ERV1 1 109 -754 2388 69 7 0 chr1 13860972 13861262 -228803091 + AluSg SINE Alu 1 292 -18 449 127 0 0 chr1 13861301 13861364 -228802989 - AluJb SINE Alu -193 119 57 1154 53 0 0 chr1 13861464 13861596 -228802757 + AluSg/x SINE Alu 160 291 -18 836 164 0 0 chr1 13861630 13861752 -228802601 - AluJb SINE Alu -190 122 1 444 242 40 0 chr1 13861951 13862050 -228802303 + MER21B LTR ERV1 140 242 -621 1792 210 102 22 chr1 13862077 13862539 -228801814 + MER21B LTR ERV1 329 827 -36 923 197 33 0 chr1 13864174 13864357 -228799996 - MER5A DNA MER1_type 0 189 1 504 47 16 0 chr1 13865036 13865100 -228799253 + U6 snRNA snRNA 1 65 -42 285 301 0 0 chr1 13865729 13865802 -228798551 + MIR3 SINE MIR 108 180 -28 932 142 27 0 chr1 13866314 13866462 -228797891 + MER3 DNA MER1_type 1 152 -57 2213 146 0 0 chr1 13866473 13866782 -228797571 + AluSx SINE Alu 1 309 -3 1876 108 12 0 chr1 13866784 13867057 -228797296 + AluY SINE Alu 32 307 0 2170 108 24 0 chr1 13867530 13867818 -228796535 - AluSq SINE Alu -18 295 1 260 221 13 26 chr1 13869585 13869662 -228794691 + L1ME LINE L1 5578 5653 -468 570 224 0 8 chr1 13869814 13870057 -228794296 + (TCCA)n Simple_repeat Simple_repeat 1 241 0 856 166 5 5 chr1 13870079 13870301 -228794052 + (TCCA)n Simple_repeat Simple_repeat 1 222 0 671 158 7 0 chr1 13870312 13870458 -228793895 + (TCCA)n Simple_repeat Simple_repeat 2 148 0 371 282 76 86 chr1 13870470 13870761 -228793592 - L2 LINE L2 -61 3211 2924 220 291 39 10 chr1 13870894 13870997 -228793356 - L3 LINE CR1 -222 1355 1250 469 218 205 51 chr1 13871413 13871569 -228792784 - MIR SINE MIR -35 227 48 1463 134 20 108 chr1 13872370 13872714 -228791639 + AluYb8 SINE Alu 1 314 -4 2848 6 0 0 chr1 13873218 13873535 -228790818 - AluYb8 SINE Alu 0 318 2 2086 122 3 3 chr1 13873842 13874146 -228790207 - AluJb SINE Alu -8 304 1 261 0 0 0 chr1 13874201 13874230 -228790123 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1887 129 0 11 chr1 13874230 13874517 -228789836 - AluSx SINE Alu -28 284 1 2023 139 0 3 chr1 13875031 13875341 -228789012 - AluJb SINE Alu -1 311 3 1722 128 4 18 chr1 13875496 13875769 -228788584 - AluSx SINE Alu -9 303 35 189 0 0 0 chr1 13875772 13875793 -228788560 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 360 0 0 0 chr1 13875792 13875832 -228788521 + (TG)n Simple_repeat Simple_repeat 2 41 0 1740 98 8 8 chr1 13875832 13876076 -228788277 - AluSx SINE Alu -34 278 35 1918 148 3 3 chr1 13876091 13876396 -228787957 - AluSx SINE Alu -7 305 1 2347 78 3 0 chr1 13876404 13876712 -228787641 - AluSp SINE Alu -4 309 1 266 140 53 0 chr1 13876719 13876776 -228787577 - L1ME4a LINE L1 -3 6118 6059 2118 112 0 0 chr1 13876836 13877132 -228787221 - AluSx SINE Alu -16 296 1 1968 122 10 0 chr1 13877134 13877429 -228786924 - AluSx SINE Alu -14 298 1 860 178 29 23 chr1 13877544 13877718 -228786635 - AluJo SINE Alu -52 260 86 1430 154 81 0 chr1 13877838 13878110 -228786243 - AluJb SINE Alu -18 294 1 2347 59 0 20 chr1 13878212 13878517 -228785836 - AluY SINE Alu -12 299 1 885 157 25 6 chr1 13878648 13878807 -228785546 - AluJo SINE Alu -118 194 33 1877 105 73 0 chr1 13879838 13880124 -228784229 + AluSp SINE Alu 1 307 -6 607 77 0 0 chr1 13880353 13880431 -228783922 - AluSc SINE Alu -24 285 208 2361 73 0 25 chr1 13880459 13880775 -228783578 + AluY SINE Alu 1 308 -3 2117 93 0 0 chr1 13880777 13881057 -228783296 + AluY SINE Alu 32 311 0 2019 105 25 0 chr1 13881531 13881817 -228782536 - AluSq SINE Alu -20 293 1 346 192 0 26 chr1 13883541 13883619 -228780734 + L1ME LINE L1 5578 5653 -468 1384 145 9 109 chr1 13887842 13888173 -228776180 + AluJo SINE Alu 1 298 -14 880 114 0 8 chr1 13888184 13888315 -228776038 + AluSq/x SINE Alu 4 133 -180 2161 100 0 7 chr1 13888318 13888618 -228775735 + AluSq SINE Alu 1 298 -15 1958 104 7 30 chr1 13888835 13889132 -228775221 - AluSc SINE Alu -19 290 1 1416 177 110 49 chr1 13889534 13889599 -228774754 - MER7A DNA MER2_type -2692 346 286 2077 106 17 0 chr1 13889599 13889892 -228774461 + AluSq SINE Alu 1 298 -15 2194 99 0 0 chr1 13889893 13890187 -228774166 + AluY SINE Alu 1 294 -17 1416 177 110 49 chr1 13890187 13890447 -228773906 - MER7A DNA MER2_type -2751 287 1 1812 145 3 10 chr1 13891270 13891573 -228772780 + AluJo SINE Alu 1 301 -11 2408 72 0 0 chr1 13891577 13891881 -228772472 + AluY SINE Alu 1 304 -7 629 165 0 9 chr1 13891881 13891985 -228772368 - AluJo/FLAM SINE Alu -201 111 9 2068 96 17 3 chr1 13892258 13892560 -228771793 + AluSq SINE Alu 1 306 -7 420 183 154 19 chr1 13892574 13892678 -228771675 + FLAM_C SINE Alu 1 118 -15 739 169 70 58 chr1 13893315 13893487 -228770866 + FAM SINE Alu 2 175 0 1191 109 10 10 chr1 13893505 13893520 -228770833 + AluSg/x SINE Alu 118 132 -177 2079 91 0 14 chr1 13893520 13893849 -228770504 + AluSg SINE Alu 1 310 0 1191 109 10 10 chr1 13893849 13894025 -228770328 + AluSg/x SINE Alu 131 309 0 1140 108 0 0 chr1 13894077 13894235 -228770118 - AluSg/x SINE Alu -18 294 137 1948 128 7 0 chr1 13894267 13894555 -228769798 - AluSx SINE Alu -22 290 1 1028 117 7 0 chr1 13894640 13894794 -228769559 - AluSc SINE Alu -16 293 139 2058 121 10 0 chr1 13894796 13895102 -228769251 - AluSq SINE Alu -4 309 1 249 255 0 0 chr1 13896243 13896294 -228768059 - L2 LINE L2 -1 3271 3221 181 29 29 57 chr1 13897445 13897480 -228766873 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 497 241 109 7 chr1 13897631 13897768 -228766585 - MIR SINE MIR -27 235 85 1018 110 0 7 chr1 13897769 13897923 -228766430 + AluSg/x SINE Alu 128 280 -32 194 260 0 40 chr1 13897945 13897995 -228766358 - MIR SINE MIR -170 92 45 1722 98 81 28 chr1 13898071 13898356 -228765997 - AluSx SINE Alu -2 310 11 299 132 66 0 chr1 13898368 13898444 -228765909 + CT-rich Low_complexity Low_complexity 1 81 0 204 40 0 0 chr1 13898462 13898487 -228765866 + (TC)n Simple_repeat Simple_repeat 1 25 0 1562 108 84 0 chr1 13898487 13898737 -228765616 - AluSx SINE Alu -8 304 34 2416 58 0 3 chr1 13898762 13899074 -228765279 - AluY SINE Alu 0 311 1 1689 179 0 3 chr1 13899227 13899524 -228764829 - AluJo SINE Alu -15 297 2 305 264 28 0 chr1 13899537 13899609 -228764744 - MIR SINE MIR -110 152 79 2106 119 0 0 chr1 13900025 13900319 -228764034 - AluSx SINE Alu -18 294 1 2137 87 30 3 chr1 13900457 13900756 -228763597 + AluSq SINE Alu 3 309 -4 2122 52 48 0 chr1 13900790 13901085 -228763268 - AluY SINE Alu 0 308 1 351 0 0 0 chr1 13901086 13901125 -228763228 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 671 241 0 14 chr1 13901127 13901268 -228763085 - AluJo SINE Alu -153 159 21 622 85 85 0 chr1 13901318 13901412 -228762941 + AluSp SINE Alu 2 103 -210 828 180 41 5 chr1 13901512 13901706 -228762647 - AluSx SINE Alu -111 201 1 519 255 8 0 chr1 13901729 13901872 -228762481 + L1MC4 LINE L1 7650 8042 0 269 26 26 0 chr1 13901925 13901963 -228762390 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 680 259 13 13 chr1 13901965 13902123 -228762230 - AluJo SINE Alu -153 159 2 2049 87 31 0 chr1 13902155 13902441 -228761912 + AluSp SINE Alu 1 295 -18 1561 165 23 0 chr1 13902450 13902716 -228761637 + AluJb SINE Alu 1 272 -40 956 211 28 83 chr1 13902840 13903006 -228761347 - L1MC3 LINE L1 0 8042 7868 2017 120 3 3 chr1 13903006 13903298 -228761055 + AluSx SINE Alu 1 292 -20 956 211 28 83 chr1 13903298 13903493 -228760860 - L1MC3 LINE L1 -174 7868 7650 1835 123 0 38 chr1 13903533 13903849 -228760504 + AluJb SINE Alu 9 312 0 321 152 29 21 chr1 13903871 13903961 -228760392 - Alu SINE Alu -3 297 242 940 127 0 61 chr1 13904065 13904246 -228760107 + AluJb SINE Alu 9 178 -134 1095 175 60 5 chr1 13906585 13906802 -228757551 + AluJo SINE Alu 64 292 -20 1161 136 212 12 chr1 13906812 13907062 -228757291 + Tigger2 DNA MER2_type 2418 2717 -1 1094 161 11 0 chr1 13907071 13907257 -228757096 - AluJb SINE Alu -2 310 123 23 33 0 0 chr1 13907279 13907309 -228757044 + AT_rich Low_complexity Low_complexity 1 30 0 1072 192 0 60 chr1 13907349 13907583 -228756770 - AluJo SINE Alu -92 220 1 1116 128 174 58 chr1 13908028 13908286 -228756067 - MER7A DNA MER2_type -1 345 60 1817 117 4 7 chr1 13908361 13908635 -228755718 + AluSx SINE Alu 27 299 -13 288 0 0 0 chr1 13908661 13908693 -228755660 + (TG)n Simple_repeat Simple_repeat 2 33 0 475 141 13 13 chr1 13908711 13908789 -228755564 + AluJ/FLAM SINE Alu 6 83 -229 480 348 47 40 chr1 13909046 13909403 -228754950 - L2 LINE L2 -562 2752 2390 2208 99 0 3 chr1 13909403 13909705 -228754648 - AluSx SINE Alu -10 302 2 480 348 47 40 chr1 13909705 13909749 -228754604 - L2 LINE L2 -924 2390 2348 300 291 20 41 chr1 13909876 13909921 -228754432 + L1MA8 LINE L1 5784 5828 -463 1856 151 10 7 chr1 13909921 13910226 -228754127 + AluSx SINE Alu 1 306 -6 1011 155 21 5 chr1 13910226 13910413 -228753940 + L1PB4 LINE L1 5823 6012 -144 203 216 171 0 chr1 13911012 13911085 -228753268 - MIR SINE MIR -81 127 34 2283 93 0 3 chr1 13911160 13911473 -228752880 + AluSx SINE Alu 1 312 0 298 151 170 0 chr1 13911492 13911545 -228752808 + AluJ/FLAM SINE Alu 1 62 -240 2517 59 0 0 chr1 13911545 13911850 -228752503 + AluSx SINE Alu 1 305 -7 1690 135 7 28 chr1 13912243 13912382 -228751971 + AluSx SINE Alu 1 141 -171 1803 117 36 36 chr1 13912382 13912691 -228751662 + AluSq SINE Alu 1 309 -4 1690 135 7 28 chr1 13912691 13912840 -228751513 + AluSx SINE Alu 141 283 -29 292 275 33 22 chr1 13912853 13912944 -228751409 + L1MC3 LINE L1 7050 7141 -644 1384 170 61 11 chr1 13913129 13913406 -228750947 + AluJo SINE Alu 1 291 -21 1200 140 6 0 chr1 13913417 13913595 -228750758 + AluSc SINE Alu 1 179 -130 2063 84 7 3 chr1 13913778 13914062 -228750291 + AluSp SINE Alu 16 300 -13 1204 186 33 36 chr1 13914068 13914188 -228750165 + AluJb SINE Alu 1 120 -192 2362 80 3 0 chr1 13914188 13914488 -228749865 + AluSp SINE Alu 1 301 -12 1204 186 33 36 chr1 13914488 13914668 -228749685 + AluJb SINE Alu 120 300 -12 423 266 84 35 chr1 13914672 13914752 -228749601 + LTR33A LTR ERVL 309 384 -139 2507 128 79 12 chr1 13914752 13915180 -228749173 + MSTB2 LTR MaLR 1 457 0 423 266 84 35 chr1 13915180 13915302 -228749051 + LTR33A LTR ERVL 384 521 -2 1498 186 10 16 chr1 13915331 13915638 -228748715 + AluJb SINE Alu 1 305 -7 271 111 0 0 chr1 13915639 13915675 -228748678 + AluS SINE Alu 29 64 -239 1649 156 0 7 chr1 13916058 13916334 -228748019 + AluJo SINE Alu 9 282 -30 363 315 55 36 chr1 13916354 13916519 -228747834 - MIR SINE MIR 0 262 95 534 187 98 8 chr1 13916544 13916667 -228747686 - MIR3 SINE MIR -60 148 15 246 210 320 0 chr1 13917228 13917328 -228747025 - MIR SINE MIR -14 248 117 1951 86 41 0 chr1 13917332 13917600 -228746753 + AluSx SINE Alu 3 281 -31 216 0 0 0 chr1 13917607 13917631 -228746722 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 254 214 0 0 chr1 13917686 13917728 -228746625 + Tigger2 DNA MER2_type 2627 2668 -50 349 165 62 21 chr1 13918301 13918398 -228745955 - L1MC4 LINE L1 -464 7578 7478 2101 107 3 13 chr1 13918406 13918716 -228745637 + AluSg SINE Alu 1 307 -3 1283 143 152 0 chr1 13918724 13918968 -228745385 + AluJo SINE Alu 2 282 -30 625 300 29 63 chr1 13918990 13919204 -228745149 - L1MC5 LINE L1 -191 7770 7550 1929 147 3 6 chr1 13919204 13919517 -228744836 - AluJb SINE Alu 0 312 1 625 300 29 63 chr1 13919517 13919778 -228744575 - L1MC5 LINE L1 -411 7550 7311 610 267 21 62 chr1 13919820 13919912 -228744441 - L1MC4 LINE L1 -606 7436 7342 2507 50 0 3 chr1 13919912 13920214 -228744139 + AluY SINE Alu 1 301 -10 610 267 21 62 chr1 13920214 13920409 -228743944 - L1MC4 LINE L1 -700 7342 7161 2087 110 0 0 chr1 13920416 13920733 -228743620 - AluSg SINE Alu 0 317 1 1212 175 8 40 chr1 13920735 13920987 -228743366 - AluJo SINE Alu -10 302 59 1736 117 0 4 chr1 14122798 14123029 -228541324 + AluSg1 SINE Alu 1 230 -79 1256 157 80 73 chr1 14123168 14123468 -228540885 + AluJo SINE Alu 1 302 -10 2121 126 0 0 chr1 14125904 14126198 -228538155 + AluSq SINE Alu 1 294 -19 2183 100 3 32 chr1 14127009 14127320 -228537033 + AluSp SINE Alu 1 302 -11 2340 70 0 54 chr1 14128870 14129185 -228535168 - AluY SINE Alu -13 298 1 680 130 10 0 chr1 14129185 14129285 -228535068 - AluY SINE Alu -167 144 44 22 35 0 0 chr1 14129332 14129361 -228534992 + AT_rich Low_complexity Low_complexity 1 29 0 2240 110 7 0 chr1 14129639 14129940 -228534413 - AluSx SINE Alu -9 303 1 2451 80 0 16 chr1 14131054 14131368 -228532985 - AluY SINE Alu -2 309 1 2244 112 7 0 chr1 14131382 14131687 -228532666 - AluSc SINE Alu -2 307 1 1707 164 3 24 chr1 14131695 14131987 -228532366 - AluSx SINE Alu -23 289 4 2919 7 0 0 chr1 14132004 14132312 -228532041 - AluYa5 SINE Alu -3 308 1 1935 122 7 7 chr1 14132335 14132622 -228531731 - AluSx SINE Alu -25 287 1 1032 145 0 13 chr1 14135218 14135413 -228528940 - AluSg/x SINE Alu 0 310 132 2024 85 0 8 chr1 14135413 14135671 -228528682 - AluSx SINE Alu -13 299 44 1581 166 46 14 chr1 14135675 14135958 -228528395 - AluJo SINE Alu -20 292 1 567 246 0 36 chr1 14136763 14136901 -228527452 + FLAM_A SINE Alu 1 133 0 2140 132 0 7 chr1 14137142 14137452 -228526901 - AluSg SINE Alu -2 308 1 547 136 0 0 chr1 14137454 14137535 -228526818 - AluSg/x SINE Alu -21 289 209 300 267 114 42 chr1 14137540 14137729 -228526624 + L2 LINE L2 2756 2955 -317 1428 163 113 25 chr1 14137729 14138012 -228526341 + AluSg SINE Alu 1 308 -2 312 329 48 21 chr1 14138057 14138322 -228526031 + MLT1J2 LTR MaLR 61 364 -86 654 108 0 21 chr1 14138456 14138549 -228525804 + AluS SINE Alu 3 93 -219 2440 137 22 63 chr1 14138612 14138663 -228525690 + MSTA LTR MaLR 1 53 -375 2253 107 13 0 chr1 14138663 14138971 -228525382 + AluSx SINE Alu 1 312 0 2440 137 22 63 chr1 14138971 14139313 -228525040 + MSTA LTR MaLR 53 376 -52 2278 114 0 0 chr1 14139313 14139610 -228524743 + AluSx SINE Alu 3 299 -13 2440 137 22 63 chr1 14139610 14139661 -228524692 + MSTA LTR MaLR 376 428 0 1723 196 0 28 chr1 14139815 14140132 -228524221 + AluJo SINE Alu 1 308 -4 758 282 60 39 chr1 14140362 14140391 -228523962 - L2 LINE L2 0 3313 3286 3574 145 36 0 chr1 14140391 14140949 -228523404 - LTR19B LTR ERV1 0 580 3 758 282 60 39 chr1 14140949 14141203 -228523150 - L2 LINE L2 -27 3286 3024 801 134 25 0 chr1 14141324 14141443 -228522910 + FRAM SINE Alu 22 143 -33 29 70 0 0 chr1 14141454 14141511 -228522842 + AT_rich Low_complexity Low_complexity 1 57 0 893 242 136 8 chr1 14141537 14141884 -228522469 - L2 LINE L2 -287 3026 2633 1212 106 0 0 chr1 14141884 14142063 -228522290 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 1024 123 6 6 chr1 14142075 14142254 -228522099 + (TAGG)n Simple_repeat Simple_repeat 1 179 0 719 220 155 26 chr1 14142256 14142426 -228521927 - L2 LINE L2 -652 2662 2515 2260 114 0 7 chr1 14142426 14142732 -228521621 - AluSq SINE Alu -9 304 1 719 220 155 26 chr1 14142732 14142825 -228521528 - L2 LINE L2 -799 2515 2365 3502 115 22 51 chr1 14143134 14143287 -228521066 + HSMAR2 DNA Mariner 9 165 -1137 2053 99 88 3 chr1 14143287 14143571 -228520782 + AluSc SINE Alu 1 308 -1 3502 115 22 51 chr1 14143571 14143752 -228520601 + HSMAR2 DNA Mariner 165 350 -952 1452 166 64 42 chr1 14143752 14143880 -228520473 + AluJb SINE Alu 1 125 -187 2315 103 3 0 chr1 14143880 14144171 -228520182 + AluSp SINE Alu 1 292 -21 1452 166 64 42 chr1 14144171 14144325 -228520028 + AluJb SINE Alu 125 289 -23 3502 115 22 51 chr1 14144325 14144615 -228519738 + HSMAR2 DNA Mariner 350 616 -686 1386 146 29 38 chr1 14144615 14144698 -228519655 + AluSx SINE Alu 58 140 -172 2232 105 10 7 chr1 14144698 14145003 -228519350 + AluSq SINE Alu 1 306 -7 1386 146 29 38 chr1 14145003 14145158 -228519195 + AluSx SINE Alu 140 294 -18 2164 128 0 0 chr1 14145181 14145477 -228518876 - AluSg SINE Alu -14 296 1 1134 82 0 0 chr1 14145477 14145612 -228518741 - AluSq/x SINE Alu -178 135 1 924 148 6 41 chr1 14145612 14145781 -228518572 - FRAM SINE Alu -13 163 1 2391 101 0 0 chr1 14146349 14146645 -228517708 + AluSg SINE Alu 1 296 -14 2245 112 14 0 chr1 14147157 14147453 -228516900 - AluSc SINE Alu -9 300 1 670 244 171 13 chr1 14147797 14148031 -228516322 + MLT1J1 LTR MaLR 61 331 -115 906 216 129 4 chr1 14148106 14148338 -228516015 - MIR SINE MIR 0 262 2 1580 152 76 4 chr1 14148350 14148613 -228515740 - AluSg SINE Alu -28 282 1 2206 103 14 0 chr1 14150662 14150952 -228513401 - AluSg SINE Alu -16 294 1 494 238 82 0 chr1 14151128 14151250 -228513103 + L2 LINE L2 3140 3271 -1 23 0 0 0 chr1 14152141 14152164 -228512189 + AT_rich Low_complexity Low_complexity 1 23 0 2424 93 0 0 chr1 14152600 14152901 -228511452 - AluSq SINE Alu -12 301 1 1587 103 0 19 chr1 14153429 14153643 -228510710 - AluSg/x SINE Alu -12 298 89 467 157 157 0 chr1 14153716 14153805 -228510548 + FLAM_A SINE Alu 23 125 -17 262 348 140 24 chr1 14158390 14158554 -228505799 + MER5A DNA MER1_type 7 189 0 2113 104 31 0 chr1 14159113 14159402 -228504951 - AluSp SINE Alu -15 298 1 2302 119 0 0 chr1 14159433 14159745 -228504608 + AluSx SINE Alu 1 312 0 633 231 0 0 chr1 14161743 14161860 -228502493 + FLAM_C SINE Alu 2 118 -15 1627 187 27 23 chr1 14161940 14162106 -228502247 - AluJb SINE Alu -11 301 132 2454 91 0 3 chr1 14162106 14162413 -228501940 - AluSx SINE Alu -6 306 1 1627 187 27 23 chr1 14162413 14162546 -228501807 - AluJb SINE Alu -180 132 1 1797 176 7 19 chr1 14163201 14163508 -228500845 - AluJb SINE Alu -5 307 5 269 199 0 2 chr1 14164086 14164322 -228500031 + AluJo SINE Alu 1 291 -11 26 30 0 0 chr1 14164322 14164355 -228499998 + AT_rich Low_complexity Low_complexity 1 33 0 689 169 42 49 chr1 14164446 14164588 -228499765 + AluJb SINE Alu 141 281 -31 293 0 27 0 chr1 14164592 14164629 -228499724 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 1921 116 10 58 chr1 14164864 14165028 -228499325 - AluSx SINE Alu -16 296 153 2501 80 0 6 chr1 14165028 14165341 -228499012 - AluY SINE Alu 0 311 1 1921 116 10 58 chr1 14165341 14165487 -228498866 - AluSx SINE Alu -159 153 1 1711 142 59 31 chr1 14165535 14165824 -228498529 + AluJo SINE Alu 11 307 -5 1895 111 0 0 chr1 14166264 14166508 -228497845 + AluSx SINE Alu 1 244 -68 2320 68 4 0 chr1 14166730 14167036 -228497317 + AluY SINE Alu 1 307 0 1599 171 73 11 chr1 14167144 14167419 -228496934 - AluJo SINE Alu -19 293 2 251 191 0 0 chr1 14167471 14167513 -228496840 + 5S rRNA rRNA 1 42 -79 2161 120 0 0 chr1 14168211 14168494 -228495859 - AluSp SINE Alu -30 283 1 2156 126 7 0 chr1 14168500 14168801 -228495552 - AluSx SINE Alu -9 303 1 801 153 0 8 chr1 14168807 14168931 -228495422 - FLAM_C SINE Alu -19 124 2 597 117 11 0 chr1 14169027 14169121 -228495232 - FLAM_C SINE Alu -6 137 43 323 285 73 7 chr1 14169379 14169530 -228494823 - L1M4 LINE L1 -1497 4649 4489 1749 176 0 10 chr1 14169910 14170199 -228494154 - AluSx SINE Alu -22 290 5 270 252 47 19 chr1 14170300 14170407 -228493946 + L1ME4a LINE L1 5577 5686 -435 2294 119 0 3 chr1 14170434 14170746 -228493607 + AluSx SINE Alu 1 311 -1 301 320 45 0 chr1 14170917 14171073 -228493280 + L1ME4a LINE L1 5959 6121 0 740 249 97 62 chr1 14171083 14171179 -228493174 + HAL1 LINE L1 4 95 -2412 2515 80 0 0 chr1 14171179 14171478 -228492875 - AluSq SINE Alu -14 299 1 740 249 97 62 chr1 14171478 14171918 -228492435 + HAL1 LINE L1 95 610 -1897 1769 224 147 55 chr1 14171920 14171998 -228492355 + HAL1 LINE L1 745 814 -1693 1671 178 17 13 chr1 14171998 14172296 -228492057 - AluJo SINE Alu -13 299 1 1769 224 147 55 chr1 14172296 14172691 -228491662 + HAL1 LINE L1 814 1171 -1336 1955 111 17 20 chr1 14172691 14172988 -228491365 + AluSx SINE Alu 1 296 -16 2739 39 0 0 chr1 14172990 14173301 -228491052 + AluY SINE Alu 1 311 0 1769 224 147 55 chr1 14173301 14173982 -228490371 + HAL1 LINE L1 1171 2386 -121 1443 117 0 69 chr1 14174716 14174801 -228489552 - AluSx SINE Alu -97 215 126 2415 78 7 0 chr1 14174801 14175096 -228489257 - AluY SINE Alu -13 298 2 1443 117 0 69 chr1 14175096 14175241 -228489112 - AluSx SINE Alu -186 126 1 688 186 26 0 chr1 14175270 14175383 -228488970 + FLAM_C SINE Alu 1 116 -17 2370 109 0 0 chr1 14175897 14176210 -228488143 - AluSq SINE Alu 0 313 1 1994 152 3 3 chr1 14176397 14176693 -228487660 - AluSx SINE Alu -16 296 1 304 333 94 7 chr1 14177371 14177516 -228486837 + MIR SINE MIR 9 167 -41 * 409 279 25 62 chr1 14177508 14177669 -228486684 + MIR SINE MIR 105 259 -3 1757 143 13 58 chr1 14177850 14178158 -228486195 - AluJb SINE Alu -18 294 1 1249 187 27 0 chr1 14178183 14178402 -228485951 + AluJo SINE Alu 65 289 -23 1885 119 4 4 chr1 14179092 14179352 -228485001 + AluSx SINE Alu 45 304 -8 2130 98 31 0 chr1 14180215 14180502 -228483851 + AluSx SINE Alu 1 296 -16 681 127 0 134 chr1 14180509 14180643 -228483710 + AluJb SINE Alu 2 117 -195 603 244 0 42 chr1 14180946 14181114 -228483239 + MER58A DNA MER1_type 47 207 -17 1602 165 50 0 chr1 14181123 14181383 -228482970 + AluJb SINE Alu 1 273 -39 1472 170 64 14 chr1 14181463 14181746 -228482607 + AluJb SINE Alu 3 299 -13 2165 100 4 0 chr1 14182178 14182458 -228481895 + AluSx SINE Alu 1 281 -31 1734 143 81 7 chr1 14182633 14182905 -228481448 - AluJo SINE Alu -10 302 11 360 213 27 0 chr1 14182952 14183027 -228481326 + AluS SINE Alu 1 77 -226 1913 171 10 7 chr1 14183051 14183360 -228480993 + AluJb SINE Alu 1 310 -2 412 325 17 8 chr1 14183654 14183771 -228480582 - MER5B DNA MER1_type -60 118 1 1925 136 3 51 chr1 14184654 14184970 -228479383 + AluJo SINE Alu 1 301 -11 2007 87 4 4 chr1 14185336 14185589 -228478764 - AluSq SINE Alu -17 296 44 958 230 68 32 chr1 14185713 14185779 -228478574 + L1ME2 LINE L1 5824 5886 -278 2371 94 0 0 chr1 14185779 14186077 -228478276 + AluSg SINE Alu 1 298 -12 958 230 68 32 chr1 14186077 14186319 -228478034 + L1ME2 LINE L1 5886 6143 -21 904 191 0 0 chr1 14186467 14186614 -228477739 + AluJo SINE Alu 1 147 -165 2480 84 0 0 chr1 14186740 14187049 -228477304 + AluY SINE Alu 1 309 -2 2380 108 0 0 chr1 14187851 14188156 -228476197 + AluSq SINE Alu 1 305 -8 2407 96 0 3 chr1 14188268 14188569 -228475784 - AluSx SINE Alu -12 300 1 1101 173 103 15 chr1 14188908 14189179 -228475174 + L1MB7 LINE L1 5890 6184 0 584 310 109 21 chr1 14190797 14191036 -228473317 - MIR SINE MIR 0 262 3 467 259 273 24 chr1 14191258 14191749 -228472604 + L2 LINE L2 2676 3313 0 2051 106 22 0 chr1 14191966 14192239 -228472114 + AluSg SINE Alu 1 279 -31 359 228 93 62 chr1 14192563 14192725 -228471628 + MIR3 SINE MIR 42 208 0 359 206 0 0 chr1 14192990 14193053 -228471300 + AluJo SINE Alu 6 68 -234 674 98 130 0 chr1 14193053 14193176 -228471177 + MER85 DNA T2_type 1 139 0 1450 152 16 28 chr1 14193177 14193427 -228470926 + AluJo SINE Alu 65 311 -1 2047 80 40 14 chr1 14193808 14194104 -228470249 - AluY SINE Alu 0 303 1 1718 186 61 3 chr1 14194181 14194299 -228470054 + AluJo SINE Alu 1 111 -201 234 0 0 0 chr1 14194299 14194325 -228470028 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1718 186 61 3 chr1 14194325 14194501 -228469852 + AluJo SINE Alu 111 312 0 746 232 212 8 chr1 14195559 14195809 -228468544 + AluYa5 SINE Alu 1 301 0 426 307 53 13 chr1 14195960 14196185 -228468168 + L1ME LINE L1 5585 5818 -303 1696 192 26 3 chr1 14196197 14196499 -228467854 + AluJb SINE Alu 1 309 -3 227 171 0 100 chr1 14196969 14197039 -228467314 + Charlie7 DNA MER1_type 40 102 -2510 260 237 158 9 chr1 14197150 14197264 -228467089 + Charlie7 DNA MER1_type 2482 2612 0 2313 65 55 0 chr1 14198134 14198427 -228465926 + AluY SINE Alu 1 309 -2 2376 89 0 16 chr1 14198459 14198772 -228465581 + AluSx SINE Alu 3 310 -2 233 116 0 23 chr1 14200212 14200255 -228464098 + (CCCGG)n Simple_repeat Simple_repeat 1 42 0 33 0 0 0 chr1 14200458 14200491 -228463862 + GC_rich Low_complexity Low_complexity 1 33 0 181 213 0 40 chr1 14200556 14200631 -228463722 + GA-rich Low_complexity Low_complexity 1 72 0 398 268 142 0 chr1 14200731 14200858 -228463495 - L2 LINE L2 0 3313 3169 254 245 10 88 chr1 14201098 14201200 -228463153 + L2 LINE L2 3176 3269 -3 2494 79 0 0 chr1 14201485 14201789 -228462564 + AluSg SINE Alu 1 304 -6 283 272 88 29 chr1 14201804 14201940 -228462413 - MLT1L LTR MaLR -6 609 466 305 167 114 97 chr1 14202009 14202123 -228462230 - MLT1J LTR MaLR -285 226 111 520 222 18 0 chr1 14202364 14202491 -228461862 + MLT1G1 LTR MaLR 3 87 -468 1428 156 18 0 chr1 14202527 14202745 -228461608 - AluJo SINE Alu -4 308 87 724 195 0 0 chr1 14202792 14202910 -228461443 - FLAM_C SINE Alu -15 118 1 2470 94 0 7 chr1 14203380 14203689 -228460664 + AluSq SINE Alu 1 307 -6 2428 89 0 22 chr1 14203689 14204004 -228460349 + AluSg SINE Alu 1 308 -2 30 27 0 0 chr1 14204224 14204261 -228460092 + AT_rich Low_complexity Low_complexity 1 37 0 830 144 0 0 chr1 14204375 14204493 -228459860 + FLAM_C SINE Alu 11 128 -15 1048 143 12 0 chr1 14204512 14204673 -228459680 - AluSg/x SINE Alu -16 294 132 2174 134 3 0 chr1 14204673 14204979 -228459374 - AluSx SINE Alu -5 307 1 2132 129 0 0 chr1 14204988 14205283 -228459070 - AluSq SINE Alu -18 295 1 839 191 31 25 chr1 14205293 14205455 -228458898 + AluJb SINE Alu 129 291 -21 2254 111 0 3 chr1 14205464 14205761 -228458592 + AluSg SINE Alu 1 296 -14 2134 123 10 0 chr1 14206071 14206364 -228457989 + AluSx SINE Alu 1 296 -16 1828 109 41 17 chr1 14207230 14207524 -228456829 - AluSg SINE Alu -7 303 3 1949 43 51 0 chr1 14207538 14207772 -228456581 - AluY SINE Alu -6 305 60 1158 39 0 0 chr1 14207772 14207899 -228456454 - AluY SINE Alu -176 135 9 1912 148 0 0 chr1 14207907 14208197 -228456156 - AluSc SINE Alu -19 290 1 483 231 0 0 chr1 14208460 14208568 -228455785 - FLAM_A SINE Alu -15 127 20 1138 64 0 0 chr1 14208585 14208725 -228455628 - AluY SINE Alu -3 308 169 1133 274 16 5 chr1 14208768 14209144 -228455209 - L1 LINE L1 -2541 3605 3226 2150 114 0 10 chr1 14210231 14210528 -228453825 - AluSg SINE Alu -16 294 1 639 144 29 0 chr1 14211860 14211964 -228452389 + AluJb SINE Alu 85 191 -121 31 0 0 0 chr1 14214148 14214179 -228450174 + AT_rich Low_complexity Low_complexity 1 31 0 1265 137 5 61 chr1 14214283 14214350 -228450003 - AluSq SINE Alu -113 200 131 2293 102 0 3 chr1 14214350 14214654 -228449699 - AluSg SINE Alu -7 303 1 1265 137 5 61 chr1 14214654 14214798 -228449555 - AluSq SINE Alu -182 131 1 2538 78 3 0 chr1 14214802 14215108 -228449245 - AluSp SINE Alu -4 309 3 2383 89 0 0 chr1 14215189 14215481 -228448872 - AluSg SINE Alu -18 292 1 1411 183 82 4 chr1 14215487 14215755 -228448598 - AluJo SINE Alu -19 293 5 965 203 127 62 chr1 14216191 14216531 -228447822 + MLT1G3 LTR MaLR 128 489 -41 1151 119 0 35 chr1 14216533 14216602 -228447751 + L1MB8 LINE L1 5417 5487 -697 2088 132 3 28 chr1 14216602 14216738 -228447615 + AluSx SINE Alu 1 139 -173 2412 108 0 0 chr1 14216738 14217045 -228447308 + AluSg SINE Alu 1 307 -3 2088 132 3 28 chr1 14217045 14217227 -228447126 + AluSx SINE Alu 139 311 -1 1151 119 0 35 chr1 14217227 14217358 -228446995 + L1MB8 LINE L1 5487 5610 -574 779 156 23 0 chr1 14217362 14217490 -228446863 + FLAM_C SINE Alu 6 136 -7 2198 140 0 0 chr1 14217498 14217806 -228446547 + AluSx SINE Alu 1 308 -4 1574 156 24 63 chr1 14217807 14218030 -228446323 + L1MB8 LINE L1 5599 5802 -376 352 68 14 176 chr1 14218030 14218063 -228446290 + U7 snRNA snRNA 2 18 -45 2434 94 0 3 chr1 14218063 14218372 -228445981 + AluSg SINE Alu 1 308 -2 352 68 14 176 chr1 14218372 14218412 -228445941 + U7 snRNA snRNA 18 63 0 1574 156 24 63 chr1 14218412 14218566 -228445787 + L1MB8 LINE L1 5802 5961 -217 26 0 0 0 chr1 14218567 14218593 -228445760 + AT_rich Low_complexity Low_complexity 1 26 0 2408 88 0 7 chr1 14218631 14218939 -228445414 - AluY SINE Alu -4 307 2 974 123 16 102 chr1 14218939 14219117 -228445236 + L1MB8 LINE L1 5955 6108 -70 2175 108 3 3 chr1 14219117 14219414 -228444939 - AluSx SINE Alu -15 297 1 974 123 16 102 chr1 14219414 14219479 -228444874 + L1MB8 LINE L1 6108 6177 -1 333 277 277 0 chr1 14219482 14219670 -228444683 - L2 LINE L2 -608 2706 2467 819 243 92 1 chr1 14220220 14220257 -228444096 - MIR SINE MIR -12 250 218 745 272 78 4 chr1 14220257 14220500 -228443853 - MIR SINE MIR 0 262 2 819 243 92 1 chr1 14220500 14220644 -228443709 - MIR SINE MIR -44 218 2 1232 123 6 0 chr1 14220680 14220859 -228443494 - AluSx SINE Alu -12 298 119 1051 88 15 0 chr1 14221649 14221786 -228442567 - AluSx SINE Alu -169 144 6 1634 104 69 9 chr1 14221918 14222149 -228442204 - AluSx SINE Alu -67 245 1 2106 71 32 74 chr1 14223155 14223466 -228440887 - AluSg1 SINE Alu -11 298 1 255 186 171 0 chr1 14223675 14223745 -228440608 - MER7A DNA MER2_type -1 335 254 1611 137 24 103 chr1 14223745 14224074 -228440279 - AluJo SINE Alu -4 308 6 858 180 0 13 chr1 14224077 14224227 -228440126 - AluJo SINE Alu -164 148 1 1583 132 22 22 chr1 14224227 14224499 -228439854 - MER7A DNA MER2_type -76 270 1 2426 68 0 0 chr1 14224568 14224860 -228439493 - AluSg SINE Alu -18 292 1 428 136 12 37 chr1 14224882 14224963 -228439390 - MER5A DNA MER1_type -83 106 28 2299 95 3 0 chr1 14225230 14225525 -228438828 + AluSq SINE Alu 1 296 -17 2102 110 7 3 chr1 14225534 14225824 -228438529 + AluSg SINE Alu 6 296 -14 2264 109 3 0 chr1 14225859 14226161 -228438192 + AluSx SINE Alu 2 304 -8 629 218 34 20 chr1 14226161 14226300 -228438053 - L1MEc LINE L1 -5726 670 527 1643 141 4 15 chr1 14226308 14226570 -228437783 + MER1B DNA MER1_type 1 259 -80 1520 229 42 42 chr1 14226596 14226901 -228437452 - L1MEc LINE L1 -5903 493 186 2395 72 0 0 chr1 14226901 14227193 -228437160 - AluSg SINE Alu -18 292 1 1520 229 42 42 chr1 14227193 14227345 -228437008 - L1MEc LINE L1 -6209 187 36 201 238 138 50 chr1 14227466 14227546 -228436807 + L2 LINE L2 3185 3271 -1 537 178 93 9 chr1 14227725 14227882 -228436471 + L1MB7 LINE L1 6017 6184 0 1819 133 0 4 chr1 14228030 14228312 -228436041 + AluSx SINE Alu 29 309 0 1341 198 88 53 chr1 14228596 14228649 -228435704 - MSTB1 LTR MaLR -19 413 363 2254 108 7 7 chr1 14228649 14228956 -228435397 + AluSx SINE Alu 1 307 -5 1341 198 88 53 chr1 14228956 14229301 -228435052 - MSTB1 LTR MaLR -69 363 1 1939 231 37 15 chr1 14229301 14229764 -228434589 - MER21B LTR ERV1 -136 727 255 2387 85 3 0 chr1 14230384 14230677 -228433676 + AluSg SINE Alu 1 294 -16 1859 142 3 27 chr1 14230987 14231320 -228433033 - AluSx SINE Alu 0 326 1 983 104 8 8 chr1 14231320 14231454 -228432899 - AluSq/x SINE Alu -178 135 2 2199 123 3 3 chr1 14231454 14231756 -228432597 - AluSx SINE Alu -10 302 1 2294 107 0 0 chr1 14231828 14232126 -228432227 - AluSx SINE Alu -14 298 1 236 67 0 0 chr1 14232126 14232156 -228432197 + MER31A LTR ERV1 3 32 -453 247 136 23 0 chr1 14232158 14232202 -228432151 + MER31A LTR ERV1 304 348 -137 877 215 45 41 chr1 14232202 14232722 -228431631 - MER4C LTR ERV1 0 587 1 646 164 31 16 chr1 14232722 14232846 -228431507 + MER31A LTR ERV1 345 470 -15 1225 162 13 40 chr1 14232847 14233075 -228431278 - AluJo SINE Alu -9 303 82 2380 104 0 13 chr1 14233086 14233402 -228430951 - AluSx SINE Alu 0 312 1 23 68 0 0 chr1 14234086 14234130 -228430223 + AT_rich Low_complexity Low_complexity 1 44 0 1263 117 0 11 chr1 14234130 14234310 -228430043 + AluSg/x SINE Alu 123 300 -12 657 168 0 9 chr1 14234326 14234433 -228429920 - AluJo SINE Alu -205 107 2 2223 101 0 17 chr1 14234474 14234652 -228429701 - AluSx SINE Alu 0 310 138 2393 104 3 0 chr1 14234652 14234950 -228429403 - AluSp SINE Alu -14 299 1 2223 101 0 17 chr1 14234950 14235084 -228429269 - AluSx SINE Alu -172 138 3 2392 103 0 6 chr1 14235307 14235619 -228428734 - AluSg SINE Alu 0 310 1 2351 82 0 55 chr1 14235625 14235953 -228428400 - AluSg SINE Alu 0 310 1 1863 162 0 29 chr1 14235962 14236271 -228428082 - AluJo SINE Alu -12 300 1 2109 122 3 0 chr1 14236278 14236572 -228427781 - AluSx SINE Alu -17 295 1 306 243 65 47 chr1 14236585 14236692 -228427661 - MER5A DNA MER1_type -80 109 1 467 144 7 122 chr1 14236701 14236766 -228427587 - Charlie1a DNA MER1_type -1307 1454 1412 1694 142 20 33 chr1 14236766 14237068 -228427285 + AluJo SINE Alu 1 298 -14 467 144 7 122 chr1 14237068 14237141 -228427212 - Charlie1a DNA MER1_type -1349 1412 1332 632 231 0 17 chr1 14237168 14237285 -228427068 + AluJo SINE Alu 2 116 -196 809 168 7 7 chr1 14237285 14237422 -228426931 - AluJb SINE Alu -10 302 166 3416 132 87 19 chr1 14237422 14238183 -228426170 + LTR12 LTR ERV1 1 714 0 1009 188 0 0 chr1 14238183 14238348 -228426005 - AluJb SINE Alu -143 169 5 1209 165 0 25 chr1 14238348 14238548 -228425805 + AluJo SINE Alu 101 295 -17 237 240 0 0 chr1 14239211 14239261 -228425092 + L2 LINE L2 3222 3271 -1 2371 71 10 3 chr1 14239549 14239843 -228424510 - AluY SINE Alu -15 296 1 2440 57 0 0 chr1 14240081 14240407 -228423946 - AluY SINE Alu 0 326 1 1118 131 0 0 chr1 14240449 14240602 -228423751 + FRAM SINE Alu 1 153 -13 203 133 0 0 chr1 14240602 14240632 -228423721 + (CTAG)n Simple_repeat Simple_repeat 1 30 0 862 105 40 8 chr1 14240772 14240896 -228423457 + AluJo SINE Alu 9 136 -176 27 29 0 0 chr1 14241232 14241266 -228423087 + GC_rich Low_complexity Low_complexity 1 34 0 2254 72 7 33 chr1 14241726 14242031 -228422322 + AluSg SINE Alu 1 297 -13 340 299 219 0 chr1 14242333 14242470 -228421883 - MIR SINE MIR -1 261 95 900 187 106 0 chr1 14242519 14242717 -228421636 + MER20 DNA MER1_type 1 219 0 186 43 0 0 chr1 14243157 14243180 -228421173 + (TG)n Simple_repeat Simple_repeat 1 23 0 2194 102 0 0 chr1 14243184 14243459 -228420894 - AluSx SINE Alu -37 275 1 345 280 88 96 chr1 14243673 14243886 -228420467 + MIR SINE MIR 4 216 -46 2523 80 10 0 chr1 14243886 14244188 -228420165 - AluSq SINE Alu -8 305 1 345 280 88 96 chr1 14244188 14244235 -228420118 + MIR SINE MIR 216 262 0 954 134 89 59 chr1 14244259 14244306 -228420047 - MER3 DNA MER1_type 0 209 165 2023 91 80 4 chr1 14244306 14244582 -228419771 - AluSq SINE Alu -16 297 1 954 134 89 59 chr1 14244582 14244736 -228419617 - MER3 DNA MER1_type -44 165 2 1566 198 51 3 chr1 14244801 14245094 -228419259 - AluJo SINE Alu -5 307 1 501 110 0 0 chr1 14245096 14245169 -228419184 - FLAM_A SINE Alu -8 134 62 2383 100 3 0 chr1 14245171 14245480 -228418873 - AluSp SINE Alu -2 311 2 693 107 39 29 chr1 14245490 14245593 -228418760 - AluJb SINE Alu -23 289 186 2404 106 3 0 chr1 14245670 14245973 -228418380 + AluSx SINE Alu 1 304 -8 2472 88 0 0 chr1 14247580 14247877 -228416476 + AluSx SINE Alu 1 297 -15 313 310 152 6 chr1 14248107 14248278 -228416075 + MIR SINE MIR 58 253 -9 2460 81 0 0 chr1 14248585 14248882 -228415471 - AluSg SINE Alu -13 297 1 2506 83 0 3 chr1 14249125 14249437 -228414916 + AluY SINE Alu 1 311 0 2271 100 0 0 chr1 14249447 14249737 -228414616 + AluSg SINE Alu 1 290 -20 2231 87 17 23 chr1 14249770 14250069 -228414284 + AluSp SINE Alu 1 297 -16 1632 156 25 21 chr1 14250119 14250445 -228413908 + AluJb SINE Alu 1 327 0 435 212 85 42 chr1 14250560 14250678 -228413675 + L2 LINE L2 3190 3312 -1 252 299 245 31 chr1 14250872 14251227 -228413126 + L2 LINE L2 2837 3267 -5 2309 104 3 3 chr1 14251497 14251796 -228412557 + AluSx SINE Alu 1 299 -13 199 265 10 78 chr1 14251858 14251960 -228412393 - MIR SINE MIR -43 219 125 2326 92 7 3 chr1 14252906 14253199 -228411154 - AluSq SINE Alu -19 294 1 643 92 0 0 chr1 14253268 14253355 -228410998 + AluSg/x SINE Alu 214 300 -12 2410 105 0 0 chr1 14253515 14253821 -228410532 + AluSx SINE Alu 1 306 -6 829 57 98 16 chr1 14253824 14253946 -228410407 + AluSq/x SINE Alu 1 132 -180 1816 77 0 0 chr1 14254009 14254229 -228410124 - AluSg/x SINE Alu -8 304 85 850 173 0 0 chr1 14255670 14255803 -228408550 + FLAM_C SINE Alu 6 138 -5 2357 90 3 31 chr1 14256226 14256548 -228407805 + AluSp SINE Alu 1 313 0 186 133 0 0 chr1 14258869 14258899 -228405454 + (CA)n Simple_repeat Simple_repeat 1 30 0 1990 144 3 7 chr1 14259276 14259575 -228404778 - AluJo SINE Alu -14 298 1 203 290 70 70 chr1 14260738 14260838 -228403515 - L2 LINE L2 -32 3240 3141 272 316 31 0 chr1 14260864 14260962 -228403391 - L2 LINE L2 0 3272 3172 2417 102 0 0 chr1 14261041 14261346 -228403007 + AluSx SINE Alu 1 305 -7 2192 101 47 3 chr1 14261349 14261647 -228402706 + AluSq SINE Alu 3 313 0 2167 86 6 71 chr1 14262304 14262630 -228401723 - AluY SINE Alu -6 305 1 2123 132 3 3 chr1 14262633 14262929 -228401424 - AluSq SINE Alu -17 296 1 2040 134 19 10 chr1 14263394 14263701 -228400652 + AluJb SINE Alu 1 310 -2 35 54 0 0 chr1 14264265 14264321 -228400032 + AT_rich Low_complexity Low_complexity 1 56 0 667 163 0 0 chr1 14264329 14264427 -228399926 - AluJ/FLAM SINE Alu -211 101 4 2212 114 3 7 chr1 14264474 14264773 -228399580 - AluSx SINE Alu -14 298 1 633 257 257 39 chr1 14264908 14265239 -228399114 - L2 LINE L2 0 3313 2911 613 289 23 28 chr1 14265226 14265444 -228398909 - L2 LINE L2 -584 2730 2514 * 328 246 14 0 chr1 14265926 14265995 -228398358 + L2 LINE L2 2985 3054 -218 2544 70 3 0 chr1 14266092 14266394 -228397959 - AluSp SINE Alu -10 303 1 2189 117 0 0 chr1 14266938 14267255 -228397098 + AluSg SINE Alu 1 317 0 498 248 90 67 chr1 14267419 14267544 -228396809 + L1ME3A LINE L1 2757 2878 -3268 704 200 0 15 chr1 14267544 14267679 -228396674 + AluJo SINE Alu 1 133 -169 1928 159 0 19 chr1 14267689 14268003 -228396350 + AluJo SINE Alu 1 308 -4 1555 142 161 0 chr1 14268004 14268265 -228396088 + AluSq SINE Alu 1 303 0 498 248 90 67 chr1 14268265 14268278 -228396075 + L1ME3A LINE L1 2886 2897 -3249 982 179 12 0 chr1 14268278 14268440 -228395913 + AluJo SINE Alu 137 300 -2 498 248 90 67 chr1 14268440 14268852 -228395501 + L1ME3A LINE L1 2897 3334 -2812 1280 275 46 46 chr1 14269014 14269651 -228394702 + L1ME3A LINE L1 3679 4320 -1826 1907 93 52 11 chr1 14269651 14269922 -228394431 + AluSx SINE Alu 1 314 0 289 0 0 0 chr1 14269922 14269954 -228394399 + (CAAAA)n Simple_repeat Simple_repeat 2 110 0 1280 275 46 46 chr1 14269954 14269982 -228394371 + L1ME3A LINE L1 4319 4346 -1800 21 0 0 0 chr1 14270025 14270046 -228394307 + AT_rich Low_complexity Low_complexity 1 21 0 692 159 84 0 chr1 14270046 14270153 -228394200 - FLAM_C SINE Alu -16 117 2 2420 88 3 13 chr1 14270163 14270469 -228393884 - AluSp SINE Alu -10 303 1 2423 87 3 0 chr1 14270474 14270772 -228393581 - AluSg SINE Alu -11 299 1 1988 127 7 39 chr1 14270774 14271081 -228393272 - AluSx SINE Alu -15 297 1 274 262 66 11 chr1 14271121 14271304 -228393049 + L1ME3A LINE L1 4361 4553 -1593 320 226 48 110 chr1 14271393 14271539 -228392814 + L1ME3A LINE L1 4548 4684 -1462 1512 216 52 38 chr1 14271817 14271951 -228392402 + L1ME3A LINE L1 5668 5799 -371 2114 142 3 0 chr1 14271951 14272253 -228392100 - AluJb SINE Alu -9 303 1 1512 216 52 38 chr1 14272253 14272614 -228391739 + L1ME3A LINE L1 5799 6170 0 337 197 42 92 chr1 14272620 14272641 -228391712 + L1ME3A LINE L1 5184 5204 -967 2456 91 3 0 chr1 14272641 14272950 -228391403 + AluSq SINE Alu 1 310 -3 337 197 42 92 chr1 14272950 14273105 -228391248 + L1ME3A LINE L1 5204 5356 -815 2296 109 0 6 chr1 14273105 14273417 -228390936 + AluSx SINE Alu 1 310 -2 337 197 42 92 chr1 14273417 14273445 -228390908 + L1ME3A LINE L1 5356 5384 -787 232 174 0 0 chr1 14273510 14273556 -228390797 + A-rich Low_complexity Low_complexity 1 46 0 2926 193 106 61 chr1 14273565 14273675 -228390678 - Charlie1a DNA MER1_type -1884 877 773 2252 99 3 14 chr1 14273675 14273969 -228390384 - AluSg SINE Alu -19 291 1 2926 193 106 61 chr1 14273969 14274003 -228390350 - Charlie1a DNA MER1_type -1988 773 742 1815 132 25 65 chr1 14274003 14274133 -228390220 + AluJb SINE Alu 1 135 -177 1831 118 16 0 chr1 14274133 14274379 -228389974 - AluSx SINE Alu -17 295 46 1815 132 25 65 chr1 14274379 14274573 -228389780 + AluJb SINE Alu 135 312 0 2926 193 106 61 chr1 14274573 14275005 -228389348 - Charlie1a DNA MER1_type -2019 742 248 2405 92 0 0 chr1 14275005 14275308 -228389045 + AluSx SINE Alu 1 303 -9 2926 193 106 61 chr1 14275308 14275568 -228388785 - Charlie1a DNA MER1_type -2513 248 1 319 293 81 0 chr1 14275625 14275724 -228388629 + L1ME3A LINE L1 5740 5846 -324 1653 125 49 40 chr1 14276103 14276336 -228388017 - MER44D DNA MER2_type -1882 609 380 2627 42 0 13 chr1 14276336 14276642 -228387711 - AluY SINE Alu -9 302 1 1653 125 49 40 chr1 14276642 14276737 -228387616 - MER44D DNA MER2_type -2111 380 8 496 323 22 35 chr1 14276771 14276997 -228387356 + L2 LINE L2 2184 2406 -908 334 250 136 108 chr1 14277183 14277507 -228386846 - L1M4 LINE L1 -823 5323 4991 22 56 0 0 chr1 14277550 14277586 -228386767 + AT_rich Low_complexity Low_complexity 1 36 0 532 243 86 63 chr1 14278328 14278433 -228385920 + MIR SINE MIR 32 133 -129 2177 121 3 0 chr1 14278433 14278730 -228385623 + AluSx SINE Alu 1 298 -14 2275 98 0 10 chr1 14278736 14279032 -228385321 + AluSg SINE Alu 8 300 -10 532 243 86 63 chr1 14279032 14279141 -228385212 + MIR SINE MIR 137 258 -4 267 103 0 0 chr1 14279240 14279279 -228385074 + (A)n Simple_repeat Simple_repeat 1 39 0 326 23 23 0 chr1 14279753 14279796 -228384557 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1857 164 0 30 chr1 14279853 14280152 -228384201 - AluJb SINE Alu -22 290 1 421 282 51 62 chr1 14280336 14280531 -228383822 + L2 LINE L2 2665 2857 -457 185 263 0 0 chr1 14280599 14280637 -228383716 + L2 LINE L2 3018 3055 -217 311 209 58 70 chr1 14281015 14281101 -228383252 - L1ME3A LINE L1 -247 5923 5839 244 238 88 0 chr1 14281908 14281988 -228382365 + L1ME LINE L1 5519 5605 -516 321 26 0 0 chr1 14281988 14282026 -228382327 + (TG)n Simple_repeat Simple_repeat 1 38 0 2419 268 70 15 chr1 14282176 14283123 -228381230 + L2 LINE L2 2302 3293 -20 853 138 0 0 chr1 14283244 14283360 -228380993 - FLAM_A SINE Alu -17 116 1 1956 196 56 5 chr1 14283411 14283825 -228380528 - MER21B LTR ERV1 -112 751 317 915 234 173 0 chr1 14284018 14284266 -228380087 - MER21B LTR ERV1 -553 310 20 338 226 0 60 chr1 14284289 14284373 -228379980 - MER21B LTR ERV1 -773 90 12 258 156 25 188 chr1 14284388 14284548 -228379805 - L1ME3A LINE L1 -373 5748 5615 513 247 60 67 chr1 14284639 14284789 -228379564 - MIR3 SINE MIR -23 185 37 363 315 163 20 chr1 14285013 14285216 -228379137 - MIR SINE MIR -12 250 19 622 144 0 0 chr1 14285439 14285529 -228378824 + AluJ/FLAM SINE Alu 2 91 -221 546 249 52 10 chr1 14285552 14285701 -228378652 - MIR SINE MIR -34 174 17 318 219 55 0 chr1 14285710 14285783 -228378570 + AluSc SINE Alu 117 193 -106 2382 112 0 0 chr1 14285826 14286131 -228378222 - AluSx SINE Alu -7 305 1 2189 125 3 0 chr1 14286133 14286429 -228377924 - AluSx SINE Alu -15 297 1 844 211 33 0 chr1 14286477 14286629 -228377724 + AluJb SINE Alu 148 304 -8 2586 61 0 3 chr1 14286629 14286941 -228377412 + AluY SINE Alu 1 311 0 2188 118 7 0 chr1 14287443 14287739 -228376614 - AluSx SINE Alu -14 298 1 2466 88 0 0 chr1 14287754 14288059 -228376294 - AluSg SINE Alu -4 306 2 692 284 96 4 chr1 14288300 14288539 -228375814 + MIR SINE MIR 2 262 0 2252 119 0 0 chr1 14289024 14289318 -228375035 + AluSx SINE Alu 1 294 -18 2530 73 0 19 chr1 14289795 14290112 -228374241 + AluSp SINE Alu 1 311 -2 1010 178 15 35 chr1 14290148 14290350 -228374003 + AluJo SINE Alu 40 237 -75 245 146 36 0 chr1 14290451 14290506 -228373847 + (CGG)n Simple_repeat Simple_repeat 3 59 0 28 105 0 0 chr1 14290605 14290710 -228373643 + GC_rich Low_complexity Low_complexity 1 105 0 29 0 0 0 chr1 14291340 14291369 -228372984 + AT_rich Low_complexity Low_complexity 1 29 0 294 143 0 0 chr1 14291491 14291540 -228372813 + (A)n Simple_repeat Simple_repeat 1 49 0 682 226 20 7 chr1 14292252 14292398 -228371955 + MIR SINE MIR 8 155 -107 2201 106 0 26 chr1 14292413 14292598 -228371755 - AluSx SINE Alu 0 312 142 2406 73 0 7 chr1 14292598 14292898 -228371455 - AluY SINE Alu -12 299 2 2201 106 0 26 chr1 14292898 14293037 -228371316 - AluSx SINE Alu -170 142 1 282 102 0 20 chr1 14293039 14293088 -228371265 - AluSp SINE Alu -170 133 86 2393 63 0 26 chr1 14293104 14293406 -228370947 - AluY SINE Alu 0 311 18 761 243 32 0 chr1 14293925 14294114 -228370239 - L1ME3A LINE L1 -5 6165 5971 2271 112 7 0 chr1 14294319 14294622 -228369731 + AluSx SINE Alu 1 305 -7 2399 91 13 0 chr1 14294916 14295223 -228369130 + AluSp SINE Alu 1 311 -2 2352 99 3 0 chr1 14295703 14296005 -228368348 - AluSq SINE Alu -10 303 1 2021 128 40 0 chr1 14296009 14296306 -228368047 - AluSx SINE Alu -3 309 1 746 195 167 0 chr1 14296348 14296522 -228367831 - MER58A DNA MER1_type -12 212 10 610 262 100 30 chr1 14296697 14296968 -228367385 - L2 LINE L2 0 3313 3024 1956 162 3 10 chr1 14297013 14297321 -228367032 - AluJo SINE Alu -6 306 1 1930 133 3 43 chr1 14297780 14298080 -228366273 + AluJo SINE Alu 5 292 -20 718 188 8 0 chr1 14298554 14298682 -228365671 - FLAM_C SINE Alu -10 133 5 2184 119 10 0 chr1 14298695 14298988 -228365365 - AluSq SINE Alu -17 296 1 2317 105 0 0 chr1 14298992 14299288 -228365065 - AluSx SINE Alu -14 298 3 2290 98 11 0 chr1 14300021 14300339 -228364014 + AluSg SINE Alu 1 321 0 2300 125 0 0 chr1 14300696 14301007 -228363346 - AluSx SINE Alu -1 311 1 310 281 134 80 chr1 14301371 14301464 -228362889 - MIR SINE MIR -14 248 161 2072 97 38 14 chr1 14301464 14301753 -228362600 - AluSq SINE Alu -17 296 1 1861 140 3 43 chr1 14301759 14302059 -228362294 - AluJb SINE Alu -20 292 5 310 281 134 80 chr1 14302059 14302182 -228362171 - MIR SINE MIR -105 157 13 2541 74 0 3 chr1 14302289 14302598 -228361755 - AluSq SINE Alu -3 310 3 519 273 15 0 chr1 14302600 14302732 -228361621 - L2 LINE L2 -13 3300 3167 1022 129 177 38 chr1 14303619 14303805 -228360548 - AluJo SINE Alu -18 294 83 1910 144 26 10 chr1 14304148 14304454 -228359899 - AluJo SINE Alu -1 311 1 2286 122 6 3 chr1 14304487 14304798 -228359555 - AluSx SINE Alu 0 312 1 872 129 0 0 chr1 14304992 14305108 -228359245 + FLAM_C SINE Alu 1 116 -17 182 37 37 0 chr1 14305108 14305135 -228359218 + (TTA)n Simple_repeat Simple_repeat 2 29 0 3745 47 0 43 chr1 14305135 14305621 -228358732 - L1PA6 LINE L1 -14 6140 5676 21 0 0 0 chr1 14305630 14305651 -228358702 + AT_rich Low_complexity Low_complexity 1 21 0 1467 141 0 107 chr1 14305676 14305966 -228358387 + AluJo SINE Alu 50 308 -4 315 146 0 8 chr1 14306187 14306255 -228358098 - Alu SINE Alu 0 302 247 219 245 38 19 chr1 14306415 14306468 -228357885 + MIR3 SINE MIR 110 163 -45 2308 84 10 7 chr1 14306781 14307079 -228357274 + AluSq SINE Alu 1 299 -14 2431 97 0 3 chr1 14307099 14307408 -228356945 + AluSq SINE Alu 1 308 -5 2454 66 0 7 chr1 14307457 14307758 -228356595 + AluY SINE Alu 1 299 -12 2326 116 0 7 chr1 14308365 14308667 -228355686 - AluSx SINE Alu -12 300 1 1926 147 3 32 chr1 14308667 14308979 -228355374 - AluJo SINE Alu -9 303 1 228 288 50 12 chr1 14310164 14310244 -228354109 + L2 LINE L2 1742 1824 -1490 240 143 0 0 chr1 14310244 14310286 -228354067 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 418 181 188 31 chr1 14310400 14310560 -228353793 - L1MC5 LINE L1 -173 7788 7604 297 296 31 0 chr1 14310731 14310829 -228353524 + L2 LINE L2 1979 2079 -1235 398 316 34 0 chr1 14310833 14310950 -228353403 - MER5B DNA MER1_type 0 178 58 732 284 134 65 chr1 14311056 14311120 -228353233 + L2 LINE L2 2258 2316 -998 2015 148 6 13 chr1 14311120 14311431 -228352922 - AluSx SINE Alu -3 309 1 732 284 134 65 chr1 14311431 14311759 -228352594 + L2 LINE L2 2316 2697 -617 1862 139 38 0 chr1 14311759 14312046 -228352307 + AluJb SINE Alu 1 298 -14 732 284 134 65 chr1 14312046 14312173 -228352180 + L2 LINE L2 2697 2814 -500 1788 105 4 8 chr1 14362173 14362411 -228301942 - AluSx SINE Alu -75 237 1 691 228 76 38 chr1 14362471 14362682 -228301671 + MER20 DNA MER1_type 1 219 0 2235 123 0 0 chr1 14362979 14363279 -228301074 + AluSx SINE Alu 1 300 -12 2405 97 3 0 chr1 14363325 14363634 -228300719 - AluSg SINE Alu 0 310 1 213 297 54 14 chr1 14363837 14363911 -228300442 + MIR SINE MIR 30 106 -102 209 302 86 8 chr1 14364063 14364185 -228300168 + MIR3 SINE MIR 68 185 -28 1798 116 95 7 chr1 14364190 14364475 -228299878 - AluSx SINE Alu -2 310 1 278 239 312 36 chr1 14364615 14364753 -228299600 + MER5A DNA MER1_type 14 189 0 * 293 337 45 39 chr1 14364753 14364902 -228299451 + MIR SINE MIR 94 243 -19 981 153 169 0 chr1 14364988 14365171 -228299182 - MER58A DNA MER1_type -1 223 10 2395 80 0 3 chr1 14365552 14365841 -228298512 + AluSq SINE Alu 3 290 -23 302 198 172 26 chr1 14365959 14366075 -228298278 - MIR3 SINE MIR -65 143 11 250 191 79 0 chr1 14366114 14366177 -228298176 + MLT1H LTR MaLR 1 68 -481 300 286 91 32 chr1 14366242 14366396 -228297957 + MLT1H LTR MaLR 374 536 -13 868 220 84 18 chr1 14366601 14366828 -228297525 + MIR SINE MIR 13 254 -8 2429 176 50 8 chr1 14367142 14367618 -228296735 - MLT1D LTR MaLR -9 496 1 2201 92 10 23 chr1 14367681 14367984 -228296369 - AluSq SINE Alu -14 299 1 2062 152 3 0 chr1 14368056 14368365 -228295988 - AluJo SINE Alu -2 310 1 400 350 49 21 chr1 14368452 14368778 -228295575 + L2 LINE L2 2520 2854 -460 556 172 50 0 chr1 14368785 14368884 -228295469 - MER81 DNA DNA -9 105 2 331 181 14 14 chr1 14369147 14369219 -228295134 - MLT1J LTR MaLR -204 307 236 22 0 0 0 chr1 14369256 14369278 -228295075 + AT_rich Low_complexity Low_complexity 1 22 0 1112 213 47 20 chr1 14369303 14369557 -228294796 + MIR SINE MIR 2 262 0 2243 94 0 41 chr1 14369697 14369842 -228294511 + AluSx SINE Alu 1 150 -162 2420 65 0 26 chr1 14369842 14370148 -228294205 + AluY SINE Alu 1 298 -13 2243 94 0 41 chr1 14370148 14370322 -228294031 + AluSx SINE Alu 150 307 -5 204 386 83 0 chr1 14370378 14370523 -228293830 + L2 LINE L2 2985 3141 -131 224 239 269 0 chr1 14371023 14371153 -228293200 + MIR3 SINE MIR 40 204 -4 200 298 91 41 chr1 14371161 14371282 -228293071 + L2 LINE L2 3178 3304 -9 190 318 16 63 chr1 14372262 14372388 -228291965 + L2 LINE L2 3194 3313 0 1044 161 0 3 chr1 14372406 14372690 -228291663 + (TGAA)n Simple_repeat Simple_repeat 4 284 0 251 217 71 9 chr1 14373078 14373171 -228291182 + MIR SINE MIR 33 137 -71 582 294 88 0 chr1 14373412 14373582 -228290771 - MIR SINE MIR -68 194 10 1714 158 13 39 chr1 14374199 14374509 -228289844 - AluJo SINE Alu -2 310 9 334 299 0 0 chr1 14374669 14374756 -228289597 - MIR SINE MIR -13 249 163 201 244 0 0 chr1 14374767 14374812 -228289541 + MIR SINE MIR 218 262 0 433 243 226 11 chr1 14375472 14375649 -228288704 + MIR SINE MIR 37 251 -11 360 333 167 0 chr1 14376178 14376322 -228288031 + MIR SINE MIR 20 187 -75 250 319 84 0 chr1 14376322 14376441 -228287912 + L2 LINE L2 2580 2708 -606 1161 170 62 136 chr1 14376445 14376608 -228287745 + AluSx SINE Alu 1 130 -182 185 0 40 0 chr1 14376608 14376633 -228287720 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1161 170 62 136 chr1 14376633 14376792 -228287561 + AluSx SINE Alu 130 299 -13 39 0 0 0 chr1 14376826 14376865 -228287488 + AT_rich Low_complexity Low_complexity 1 39 0 863 249 111 51 chr1 14376873 14377284 -228287069 + L2 LINE L2 2701 3150 -163 2305 92 0 0 chr1 14377284 14377589 -228286764 - AluSx SINE Alu -7 305 1 863 249 111 51 chr1 14377589 14377761 -228286592 + L2 LINE L2 3150 3310 -3 263 372 41 0 chr1 14378313 14378434 -228285919 + MIR SINE MIR 81 206 -56 2122 116 0 0 chr1 14378445 14378755 -228285598 + AluSq SINE Alu 1 310 0 838 268 0 71 chr1 14378877 14379033 -228285320 + MIR SINE MIR 13 144 -118 2377 87 10 0 chr1 14379033 14379342 -228285011 - AluSq SINE Alu 0 313 2 838 268 0 71 chr1 14379342 14379454 -228284899 + MIR SINE MIR 144 262 0 269 328 125 0 chr1 14379472 14379600 -228284753 - MIR3 SINE MIR -25 183 40 271 278 157 9 chr1 14379769 14379877 -228284476 - MIR SINE MIR -109 153 30 1059 158 0 0 chr1 14380321 14380486 -228283867 - AluSg/x SINE Alu -14 298 134 1528 163 50 21 chr1 14380486 14380769 -228283584 - AluSx SINE Alu -5 307 17 381 311 50 0 chr1 14380799 14380918 -228283435 - MIR SINE MIR -13 249 125 1051 146 0 12 chr1 14380921 14381086 -228283267 + FRAM SINE Alu 2 164 -12 316 309 32 0 chr1 14381087 14381181 -228283172 - MIR SINE MIR -76 132 36 329 277 12 0 chr1 14381399 14381482 -228282871 + MIR3 SINE MIR 116 199 -9 1446 98 25 0 chr1 14381804 14382008 -228282345 - AluSg/x SINE Alu -19 293 85 186 43 0 0 chr1 14382008 14382031 -228282322 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1790 117 48 15 chr1 14382040 14382313 -228282040 - AluSx SINE Alu -30 282 1 216 195 172 35 chr1 14382698 14382785 -228281568 + MIR SINE MIR 35 133 -75 863 165 0 16 chr1 14382948 14383130 -228281223 + (CA)n Simple_repeat Simple_repeat 2 180 0 358 234 224 88 chr1 14383509 14383625 -228280728 + MIR SINE MIR 45 144 -118 2358 91 3 0 chr1 14383625 14383934 -228280419 + AluSx SINE Alu 1 310 -2 358 234 224 88 chr1 14383934 14384009 -228280344 + MIR SINE MIR 144 262 0 513 192 62 71 chr1 14384058 14384119 -228280234 + ORSL DNA AcHobo 23 83 -192 1735 189 0 3 chr1 14384119 14384431 -228279922 + AluJo SINE Alu 1 311 -1 513 192 62 71 chr1 14384431 14384593 -228279760 + ORSL DNA AcHobo 83 244 -31 2078 138 0 0 chr1 14385042 14385338 -228279015 - AluSx SINE Alu -16 296 1 249 108 0 0 chr1 14385436 14385473 -228278880 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 197 250 78 0 chr1 14385478 14385542 -228278811 - L2 LINE L2 -17 3255 3187 207 0 0 0 chr1 14386280 14386303 -228278050 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1607 139 94 8 chr1 14386305 14386572 -228277781 - AluJo SINE Alu -22 290 1 854 138 0 0 chr1 14386824 14386947 -228277406 - FLAM_C SINE Alu -16 127 5 241 304 29 0 chr1 14387239 14387308 -228277045 - MIR SINE MIR -55 153 83 480 318 32 21 chr1 14387513 14387589 -228276764 + MIR SINE MIR 36 110 -152 2245 84 0 0 chr1 14387589 14387897 -228276456 - AluSx SINE Alu 0 308 1 480 318 32 21 chr1 14387897 14388008 -228276345 + MIR SINE MIR 110 226 -36 2238 106 0 13 chr1 14389965 14390276 -228274077 - AluSx SINE Alu -5 307 1 318 271 45 45 chr1 14390343 14390468 -228273885 + MIR SINE MIR 63 188 -69 209 310 163 31 chr1 14392109 14392238 -228272115 + L2 LINE L2 3167 3312 -1 288 341 8 23 chr1 14392779 14392908 -228271445 - L3 LINE CR1 -108 1469 1343 2224 105 0 0 chr1 14392950 14393244 -228271109 - AluSx SINE Alu -18 294 1 747 212 196 5 chr1 14393398 14393582 -228270771 - MER20 DNA MER1_type 0 219 1 1890 132 47 7 chr1 14394283 14394579 -228269774 - AluJo SINE Alu -4 308 1 316 237 110 18 chr1 14394864 14395005 -228269348 - MIR SINE MIR -62 146 7 2448 69 0 0 chr1 14395603 14395907 -228268446 - AluY SINE Alu -7 304 1 704 181 44 106 chr1 14395920 14396096 -228268257 + MER20 DNA MER1_type 8 169 -50 2251 108 0 0 chr1 14396096 14396401 -228267952 + AluSg SINE Alu 1 305 -5 704 181 44 106 chr1 14396401 14396450 -228267903 + MER20 DNA MER1_type 169 219 0 275 330 28 18 chr1 14396454 14396563 -228267790 + MIR SINE MIR 151 260 -2 742 272 60 4 chr1 14397249 14397484 -228266869 + MIR SINE MIR 14 261 -1 1725 159 33 10 chr1 14397545 14397669 -228266684 + AluJb SINE Alu 1 121 -191 2138 117 0 0 chr1 14397669 14397978 -228266375 + AluSg SINE Alu 1 309 0 1725 159 33 10 chr1 14397978 14398154 -228266199 + AluJb SINE Alu 121 309 -3 320 238 62 33 chr1 14398823 14398945 -228265408 - MIR3 SINE MIR -43 165 35 554 288 156 0 chr1 14399475 14399687 -228264666 - MIR SINE MIR -14 248 4 355 298 164 35 chr1 14399709 14399880 -228264473 - L3 LINE CR1 -8 1569 1377 2632 36 0 0 chr1 14399882 14400187 -228264166 + AluY SINE Alu 1 305 -6 2436 96 0 0 chr1 14400197 14400509 -228263844 + AluSx SINE Alu 1 312 0 188 308 51 26 chr1 14400560 14400677 -228263676 - MIR3 SINE MIR -84 124 5 225 108 0 0 chr1 14400903 14400940 -228263413 + (GA)n Simple_repeat Simple_repeat 1 37 0 405 274 150 26 chr1 14401318 14401376 -228262977 - MER5A DNA MER1_type -1 188 139 1913 149 3 3 chr1 14401376 14401671 -228262682 + AluJo SINE Alu 1 295 -17 405 274 150 26 chr1 14401671 14401765 -228262588 - MER5A DNA MER1_type -50 139 17 501 245 43 22 chr1 14401767 14401906 -228262447 + MIR SINE MIR 12 153 -109 476 199 58 79 chr1 14402581 14402697 -228261656 + MIR SINE MIR 41 153 -98 2268 116 0 3 chr1 14402697 14403008 -228261345 + AluSx SINE Alu 1 310 -2 476 199 58 79 chr1 14403008 14403045 -228261308 + MIR SINE MIR 153 189 -62 336 252 165 0 chr1 14403469 14403584 -228260769 - MIR SINE MIR -73 189 56 274 244 337 12 chr1 14403950 14404122 -228260231 - MIR SINE MIR -12 250 23 324 309 32 56 chr1 14404737 14404863 -228259490 + MIR3 SINE MIR 59 181 -27 292 283 10 20 chr1 14405048 14405147 -228259206 - MIR3 SINE MIR -12 196 99 401 229 21 10 chr1 14405997 14406093 -228258260 + MIR SINE MIR 20 116 -146 26 30 0 0 chr1 14408168 14408201 -228256152 + GC_rich Low_complexity Low_complexity 1 33 0 38 22 0 0 chr1 14408640 14408685 -228255668 + GC_rich Low_complexity Low_complexity 1 45 0 537 241 49 12 chr1 14409461 14409623 -228254730 + MER5A DNA MER1_type 22 189 0 2353 73 0 3 chr1 14411828 14412129 -228252224 - AluY SINE Alu -11 300 1 364 303 17 17 chr1 14412744 14412863 -228251490 + L2 LINE L2 3195 3313 0 1904 132 10 16 chr1 14413368 14413672 -228250681 - AluJb SINE Alu -5 307 6 1623 188 20 7 chr1 14413893 14414191 -228250162 - AluJo SINE Alu -10 302 1 3092 169 57 51 chr1 14414191 14414647 -228249706 + MER21A LTR ERV1 16 522 -409 2303 89 0 7 chr1 14414647 14414951 -228249402 - AluSq SINE Alu -11 302 1 3092 169 57 51 chr1 14414951 14415336 -228249017 + MER21A LTR ERV1 522 903 -28 615 182 94 61 chr1 14415458 14415639 -228248714 + MER58A DNA MER1_type 30 216 -8 402 332 132 5 chr1 14415715 14415905 -228248448 + MIR SINE MIR 49 262 0 825 21 0 0 chr1 14416052 14416149 -228248204 + L1PA4 LINE L1 6056 6152 -3 220 263 0 18 chr1 14416282 14416339 -228248014 + L2 LINE L2 3257 3312 -1 379 263 0 51 chr1 14417249 14417386 -228246967 + LTR67 LTR ERVL 428 557 0 466 276 56 56 chr1 14417664 14417776 -228246577 + MLT1H LTR MaLR 230 341 -208 1131 205 29 5 chr1 14417776 14417986 -228246367 - MER20 DNA MER1_type -3 216 2 466 276 56 56 chr1 14417986 14418177 -228246176 + MLT1H LTR MaLR 340 533 -16 450 288 40 57 chr1 14418196 14418591 -228245762 - MLT1J LTR MaLR -50 461 37 1975 166 3 0 chr1 14418907 14419202 -228245151 - AluJo SINE Alu -16 296 1 26 0 0 0 chr1 14419313 14419339 -228245014 + AT_rich Low_complexity Low_complexity 1 26 0 2360 94 0 3 chr1 14419365 14419663 -228244690 + AluSq SINE Alu 1 297 -16 573 288 117 0 chr1 14419937 14420142 -228244211 + MIR SINE MIR 34 262 0 1074 117 0 0 chr1 14420192 14420337 -228244016 - AluSg/x SINE Alu -12 300 156 2066 140 14 0 chr1 14420344 14420636 -228243717 - AluSg SINE Alu -14 296 1 2560 60 0 22 chr1 14421267 14421584 -228242769 - AluY SINE Alu -1 310 1 2167 141 0 3 chr1 14421647 14421960 -228242393 - AluSx SINE Alu 0 312 1 314 318 34 34 chr1 14421967 14422115 -228242238 - L1ME4a LINE L1 0 6121 5974 1979 142 0 37 chr1 14422135 14422459 -228241894 - AluJb SINE Alu 0 312 1 1224 68 182 0 chr1 14422583 14422775 -228241578 + MER30 DNA MER1_type 4 230 0 2346 68 20 3 chr1 14423162 14423455 -228240898 - AluY SINE Alu -13 298 1 248 138 0 69 chr1 14423742 14423800 -228240553 + MIR SINE MIR 118 171 -91 180 318 16 0 chr1 14424525 14424588 -228239765 + L2 LINE L2 2990 3053 -260 899 216 0 5 chr1 14424694 14424879 -228239474 + AluSg/x SINE Alu 112 295 -17 257 232 217 40 chr1 14424940 14425031 -228239322 - MER106A DNA MER1_type -2 234 160 339 25 0 0 chr1 14425031 14425071 -228239282 + (TG)n Simple_repeat Simple_repeat 2 41 0 257 232 217 40 chr1 14425071 14425124 -228239229 - MER106A DNA MER1_type -76 160 118 2192 103 41 0 chr1 14425124 14425414 -228238939 + AluSx SINE Alu 1 302 -10 257 232 217 40 chr1 14425414 14425466 -228238887 - MER106A DNA MER1_type -118 118 2 308 283 9 19 chr1 14425528 14425634 -228238719 + L2 LINE L2 3207 3311 -2 2616 41 3 0 chr1 14425943 14426236 -228238117 - AluY SINE Alu -17 294 1 854 103 0 0 chr1 14426994 14427101 -228237252 + AluY SINE Alu 1 107 -204 373 73 0 37 chr1 14427103 14427197 -228237156 + Alu SINE Alu 240 302 0 373 278 173 16 chr1 14427923 14428114 -228236239 - MER102a DNA MER1_type -2 328 108 2465 82 3 0 chr1 14428119 14428423 -228235930 - AluSx SINE Alu -7 305 1 992 122 5 41 chr1 14428540 14428736 -228235617 - MER53 DNA DNA 0 189 1 1643 174 3 11 chr1 14429018 14429305 -228235048 - AluJo SINE Alu -9 303 19 252 115 10 73 chr1 14430149 14430245 -228234108 + (GGGA)n Simple_repeat Simple_repeat 1 90 0 1949 151 3 3 chr1 14430586 14430884 -228233469 - AluJb SINE Alu -14 298 1 1005 110 0 7 chr1 14430884 14431020 -228233333 - AluJo SINE Alu -177 135 1 1991 124 3 77 chr1 14431298 14431671 -228232682 + AluSq SINE Alu 1 348 0 206 287 85 21 chr1 14431688 14431782 -228232571 - MIR SINE MIR -44 218 119 252 237 162 64 chr1 14432245 14432474 -228231879 - MIR SINE MIR -1 261 4 1642 163 48 24 chr1 14432694 14432983 -228231370 - AluJo SINE Alu -16 296 1 372 292 0 8 chr1 14434406 14434526 -228229827 + (CA)n Simple_repeat Simple_repeat 2 120 0 403 205 79 57 chr1 14434566 14434774 -228229579 + MIR SINE MIR 17 227 -35 431 287 64 6 chr1 14435281 14435438 -228228915 - MIR SINE MIR -74 188 23 330 315 0 0 chr1 14435828 14435920 -228228433 + (TCCA)n Simple_repeat Simple_repeat 3 94 0 363 303 21 88 chr1 14435921 14436159 -228228194 - MIR SINE MIR -10 252 31 811 200 56 37 chr1 14438052 14438267 -228226086 + MER20 DNA MER1_type 1 219 0 300 311 94 19 chr1 14438277 14438383 -228225970 + L2 LINE L2 3159 3272 0 8574 43 10 0 chr1 14438510 14439469 -228224884 + LTR5 LTR ERVK 1 969 0 186 43 0 0 chr1 14439716 14439739 -228224614 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 793 239 16 82 chr1 14440080 14440174 -228224179 + MIR SINE MIR 36 135 -127 1928 134 72 0 chr1 14440174 14440465 -228223888 - AluSx SINE Alu 0 312 1 793 239 16 82 chr1 14440465 14440613 -228223740 + MIR SINE MIR 135 262 0 2029 138 27 7 chr1 14440633 14440931 -228223422 - AluJb SINE Alu -8 304 1 1500 196 0 19 chr1 14441462 14441733 -228222620 - AluJo SINE Alu -46 266 1 608 237 177 19 chr1 14441751 14441966 -228222387 - MIR SINE MIR 0 262 14 2408 75 0 3 chr1 14442097 14442477 -228221876 + AluY SINE Alu 1 311 0 262 222 28 14 chr1 14443008 14443080 -228221273 - MIR SINE MIR -127 135 63 2213 124 3 0 chr1 14443331 14443638 -228220715 + AluSg SINE Alu 1 308 -2 411 186 0 0 chr1 14444488 14444558 -228219795 + MER3 DNA MER1_type 16 85 -124 1590 167 37 11 chr1 14444647 14444916 -228219437 - AluJo SINE Alu -36 276 1 2342 75 7 10 chr1 14444965 14445258 -228219095 - AluSg SINE Alu -18 292 1 650 290 75 4 chr1 14445438 14445693 -228218660 - L2 LINE L2 0 3313 3041 212 158 0 0 chr1 14445775 14445813 -228218540 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 310 335 43 27 chr1 14445898 14446083 -228218270 - L2 LINE L2 -35 3278 3091 601 291 48 33 chr1 14446228 14446561 -228217792 + L2 LINE L2 2958 3295 -18 291 279 0 0 chr1 14447252 14447320 -228217033 + L2 LINE L2 3205 3272 0 389 277 118 14 chr1 14447964 14448184 -228216169 + L1MC4a LINE L1 5687 5929 -1879 1927 154 0 7 chr1 14448210 14448524 -228215829 + AluJb SINE Alu 1 312 0 350 283 150 6 chr1 14448546 14448726 -228215627 - MIR SINE MIR -44 218 13 514 297 63 63 chr1 14449354 14449533 -228214820 - MIR SINE MIR -14 248 67 2090 115 14 24 chr1 14449533 14449829 -228214524 - AluSq SINE Alu -20 293 1 514 297 63 63 chr1 14449829 14449888 -228214465 - MIR SINE MIR -194 68 10 372 264 76 123 chr1 14450093 14450213 -228214140 - L2 LINE L2 -1 3271 3147 2238 113 0 19 chr1 14450213 14450531 -228213822 + AluSx SINE Alu 1 312 0 372 264 76 123 chr1 14450531 14450686 -228213667 - L2 LINE L2 -125 3147 3009 1604 103 0 0 chr1 14451055 14451258 -228213095 - AluSx SINE Alu -94 218 16 390 277 27 9 chr1 14451258 14451370 -228212983 - MIR SINE MIR -100 162 49 242 311 78 0 chr1 14451784 14451887 -228212466 - MIR SINE MIR -88 174 64 2452 89 3 0 chr1 14452177 14452481 -228211872 - AluSg SINE Alu -5 305 1 1551 149 87 29 chr1 14452884 14453160 -228211193 + AluJo SINE Alu 21 312 0 2511 90 0 0 chr1 14453849 14454159 -228210194 - AluSx SINE Alu -2 310 1 408 195 35 62 chr1 14454970 14455056 -228209297 - MIR SINE MIR -62 146 62 2380 146 37 0 chr1 14455056 14455466 -228208887 + MSTC LTR MaLR 1 425 -3 408 195 35 62 chr1 14455466 14455492 -228208861 - MIR SINE MIR -146 62 37 2462 58 7 0 chr1 14456466 14456761 -228207592 - AluSc SINE Alu -12 297 1 220 307 20 30 chr1 14456890 14456991 -228207362 + L2 LINE L2 3173 3272 0 962 212 19 0 chr1 14457036 14457248 -228207105 + MER20 DNA MER1_type 4 219 0 482 229 14 14 chr1 14458106 14458246 -228206107 + L2 LINE L2 2921 3060 -212 2122 135 0 31 chr1 14458348 14458523 -228205830 - AluSx SINE Alu -4 308 146 2188 62 0 0 chr1 14458523 14458779 -228205574 - AluY SINE Alu -16 295 40 2122 135 0 31 chr1 14458779 14458921 -228205432 - AluSx SINE Alu -166 146 1 971 221 11 0 chr1 14459933 14460123 -228204230 + MER20 DNA MER1_type 28 219 0 795 293 18 4 chr1 14460509 14460734 -228203619 - L3 LINE CR1 -160 1417 1190 2315 86 3 13 chr1 14460839 14461143 -228203210 - AluSc SINE Alu -8 301 1 547 297 7 0 chr1 14461283 14461428 -228202925 + L1ME4a LINE L1 5517 5662 -459 2353 104 0 0 chr1 14461599 14461897 -228202456 - AluSx SINE Alu -14 298 1 2149 184 85 2 chr1 14461898 14462321 -228202032 + LTR24 LTR ERV1 10 467 0 324 220 33 47 chr1 14462446 14462596 -228201757 + L1ME4a LINE L1 5974 6121 0 2438 103 0 0 chr1 14463259 14463560 -228200793 - AluSx SINE Alu -11 301 1 332 235 31 31 chr1 14464047 14464145 -228200208 - L3 LINE CR1 -420 1157 1060 332 285 41 64 chr1 14464177 14464349 -228200004 - MER5A DNA MER1_type -15 174 7 2532 90 0 0 chr1 14464752 14465064 -228199289 - AluSx SINE Alu 0 312 1 557 317 36 18 chr1 14465242 14465466 -228198887 - MIR SINE MIR -27 235 8 372 235 77 41 chr1 14466297 14466467 -228197886 + L1ME4a LINE L1 5943 6118 -3 212 296 123 67 chr1 14466875 14467054 -228197299 - MIR SINE MIR -61 201 13 2270 129 0 0 chr1 14467114 14467423 -228196930 - AluSx SINE Alu -2 310 2 345 321 71 0 chr1 14467748 14467888 -228196465 - MIR SINE MIR -65 197 48 313 259 14 77 chr1 14468219 14468362 -228195991 + L2 LINE L2 3180 3313 0 549 268 30 18 chr1 14469113 14469277 -228195076 - MIR SINE MIR -89 173 8 273 119 0 0 chr1 14469500 14469542 -228194811 + (TAA)n Simple_repeat Simple_repeat 1 42 0 353 319 28 7 chr1 14469594 14469735 -228194618 - MIR SINE MIR -75 187 44 2024 98 8 4 chr1 14470738 14471004 -228193349 + AluSx SINE Alu 1 267 -45 194 307 67 27 chr1 14471672 14471747 -228192606 - MIR SINE MIR -179 83 6 442 297 131 9 chr1 14471749 14471971 -228192382 + L3 LINE CR1 863 1111 -466 385 259 225 55 chr1 14471978 14472267 -228192086 - MER102b DNA MER1_type -3 338 1 278 302 114 42 chr1 14472310 14472618 -228191735 + L3 LINE CR1 1172 1501 -76 505 336 33 5 chr1 14473524 14473738 -228190615 + MIR SINE MIR 2 221 -41 239 317 100 17 chr1 14473748 14473868 -228190485 - MIR SINE MIR -116 146 17 757 193 198 0 chr1 14473868 14474055 -228190298 + MER58A DNA MER1_type 1 224 0 361 274 20 65 chr1 14475175 14475328 -228189025 + MER5B DNA MER1_type 1 146 -32 842 157 0 15 chr1 14475392 14475526 -228188827 + AluJo SINE Alu 4 135 -177 1772 197 0 3 chr1 14475526 14475820 -228188533 + AluJo SINE Alu 1 293 -19 347 204 114 37 chr1 14475840 14475977 -228188376 - MER5A DNA MER1_type -25 164 7 364 285 250 14 chr1 14476004 14476148 -228188205 + MER5A DNA MER1_type 12 189 0 509 234 74 13 chr1 14476882 14477078 -228187275 + MIR SINE MIR 1 248 -14 185 316 211 23 chr1 14477078 14477211 -228187142 + MIR3 SINE MIR 2 159 -49 957 170 37 108 chr1 14477212 14477281 -228187072 + MER58A DNA MER1_type 1 73 -2347 2343 106 0 0 chr1 14477281 14477584 -228186769 - AluSx SINE Alu -6 306 4 957 170 37 108 chr1 14477584 14477755 -228186598 + MER58A DNA MER1_type 73 224 0 527 301 229 12 chr1 14477792 14478207 -228186146 + MLT1H LTR MaLR 32 536 -13 2206 106 21 0 chr1 14478366 14478649 -228185704 + AluSx SINE Alu 6 294 -18 2091 149 0 13 chr1 14479166 14479475 -228184878 + AluSx SINE Alu 1 305 -7 229 306 157 9 chr1 14479538 14479646 -228184707 - L2 LINE L2 -10 3262 3139 1853 172 107 35 chr1 14479863 14480323 -228184030 + MLT1D LTR MaLR 8 500 -5 245 306 59 0 chr1 14480546 14480631 -228183722 - MIR SINE MIR -62 146 57 711 181 54 42 chr1 14480814 14480980 -228183373 - MER20 DNA MER1_type -18 201 34 251 250 13 13 chr1 14481304 14481380 -228182973 - MER91A DNA MER1_type -11 185 110 261 307 203 13 chr1 14482195 14482348 -228182005 - MIR SINE MIR -33 229 48 305 288 25 0 chr1 14482814 14482894 -228181459 + L2 LINE L2 3191 3272 0 373 288 151 14 chr1 14483821 14484033 -228180320 - MIR SINE MIR -17 245 5 511 323 28 68 chr1 14484232 14484361 -228179992 + MIR SINE MIR 10 126 -136 1923 153 23 0 chr1 14484361 14484662 -228179691 + AluJb SINE Alu 1 308 -4 511 323 28 68 chr1 14484662 14484780 -228179573 + MIR SINE MIR 126 247 -15 413 284 40 20 chr1 14484934 14485082 -228179271 + MIR SINE MIR 111 261 -1 192 125 0 0 chr1 14485084 14485116 -228179237 + (CAT)n Simple_repeat Simple_repeat 3 34 0 276 125 0 42 chr1 14485118 14485190 -228179163 + (TCC)n Simple_repeat Simple_repeat 3 71 0 1541 195 7 36 chr1 14485758 14486060 -228178293 - AluJo SINE Alu -18 294 2 249 261 11 43 chr1 14486450 14486542 -228177811 + L1MC4a LINE L1 5521 5609 -512 618 149 0 0 chr1 14486716 14486850 -228177503 + (TTCC)n Simple_repeat Simple_repeat 4 137 0 912 178 0 0 chr1 14486854 14487126 -228177227 + (TCCA)n Simple_repeat Simple_repeat 1 272 0 220 324 14 0 chr1 14487145 14487219 -228177134 - L2 LINE L2 0 3313 3239 391 278 163 41 chr1 14487254 14487721 -228176632 + L2 LINE L2 2288 2811 -503 452 251 49 18 chr1 14488191 14488389 -228175964 + L1MC4a LINE L1 5651 5800 -321 797 244 6 11 chr1 14488462 14488642 -228175711 - MIR SINE MIR -6 256 78 180 111 0 0 chr1 14490218 14490245 -228174108 + (A)n Simple_repeat Simple_repeat 1 27 0 2439 93 3 0 chr1 14490423 14490735 -228173618 - AluSp SINE Alu 0 313 1 290 306 0 0 chr1 14491897 14491969 -228172384 + L2 LINE L2 3177 3248 -24 195 42 0 0 chr1 14493142 14493166 -228171187 + (CA)n Simple_repeat Simple_repeat 2 25 0 623 256 105 0 chr1 14494263 14494454 -228169899 + MIR SINE MIR 47 257 -5 2667 73 3 0 chr1 14495301 14495655 -228168698 + THE1A LTR MaLR 1 355 0 952 179 67 0 chr1 14495769 14495948 -228168405 + MER3 DNA MER1_type 1 191 -18 416 206 37 37 chr1 14495959 14496066 -228168287 + MIR SINE MIR 33 139 -123 24 0 0 0 chr1 14496086 14496110 -228168243 + AT_rich Low_complexity Low_complexity 1 24 0 584 275 31 37 chr1 14496298 14496647 -228167706 + L1MEc LINE L1 1643 1989 -4732 210 308 0 0 chr1 14496647 14496754 -228167599 + (CA)n Simple_repeat Simple_repeat 1 107 0 233 293 68 15 chr1 14496756 14496889 -228167464 + L1MEc LINE L1 1953 2092 -4448 520 303 57 72 chr1 14496900 14497257 -228167096 + L1MEc LINE L1 2199 2472 -4249 2240 125 3 0 chr1 14497257 14497562 -228166791 + AluSc SINE Alu 3 308 -1 520 303 57 72 chr1 14497562 14497667 -228166686 + L1MEc LINE L1 2472 2577 -4144 2205 261 52 25 chr1 14497668 14498498 -228165855 + L1MEc LINE L1 2554 3405 -3135 816 132 25 0 chr1 14498885 14499006 -228165347 - FLAM_C SINE Alu -17 126 3 821 132 0 44 chr1 14499357 14499493 -228164860 + FLAM_C SINE Alu 1 130 -3 794 196 117 6 chr1 14499698 14499816 -228164537 + MER3 DNA MER1_type 11 157 -52 2362 93 0 23 chr1 14499816 14500126 -228164227 - AluSx SINE Alu 0 312 10 794 196 117 6 chr1 14500126 14500186 -228164167 + MER3 DNA MER1_type 157 209 0 313 287 67 27 chr1 14500325 14500475 -228163878 + MIR SINE MIR 2 157 -105 272 205 34 34 chr1 14501225 14501283 -228163070 - MER113 DNA MER1_type? -288 233 176 2055 123 0 17 chr1 14501283 14501575 -228162778 - AluSx SINE Alu -17 295 9 272 205 34 34 chr1 14501575 14501633 -228162720 - MER113 DNA MER1_type? -344 177 117 417 300 56 38 chr1 14502509 14502701 -228161652 + L1ME4a LINE L1 5548 5748 -373 2572 72 0 3 chr1 14502701 14503006 -228161347 + AluY SINE Alu 1 304 -7 417 300 56 38 chr1 14503006 14503080 -228161273 + L1ME4a LINE L1 5748 5819 -302 300 275 118 38 chr1 14503133 14503344 -228161009 + L1ME4a LINE L1 5894 6121 0 425 220 22 0 chr1 14503567 14503888 -228160465 + (CA)n Simple_repeat Simple_repeat 1 328 0 2055 91 44 7 chr1 14504384 14504699 -228159654 - AluSq SINE Alu 0 325 1 216 238 61 122 chr1 14505760 14505816 -228158537 + MIR SINE MIR 36 94 -168 2043 151 0 3 chr1 14505816 14506108 -228158245 - AluJb SINE Alu -21 291 1 216 238 61 122 chr1 14506108 14506198 -228158155 + MIR SINE MIR 94 173 -89 2170 198 114 8 chr1 14506222 14506712 -228157641 + MLT1F LTR MaLR 1 542 0 1684 266 98 14 chr1 14506909 14507494 -228156859 - L1MEc LINE L1 -5658 738 95 188 35 35 0 chr1 14507494 14507523 -228156830 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1684 266 98 14 chr1 14507523 14507569 -228156784 - L1MEc LINE L1 -6301 95 54 473 263 58 26 chr1 14507608 14507764 -228156589 + MLT1I LTR MaLR 235 395 -14 573 219 159 0 chr1 14507764 14507915 -228156438 - MER5A DNA MER1_type -2 187 13 460 271 137 45 chr1 14508411 14508695 -228155658 + L2 LINE L2 2718 2975 -338 1479 113 17 22 chr1 14508695 14508926 -228155427 + MER30 DNA MER1_type 1 230 0 460 271 137 45 chr1 14508926 14509177 -228155176 + L2 LINE L2 2975 3296 -17 225 0 0 0 chr1 14509179 14509204 -228155149 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 190 306 0 0 chr1 14509509 14509558 -228154795 - L2 LINE L2 -14 3299 3251 446 247 48 42 chr1 14509558 14509724 -228154629 + MER117 DNA MER1_type 4 170 -27 2110 72 97 27 chr1 14510394 14510457 -228153896 - THE1A LTR MaLR -1 354 297 2600 66 0 0 chr1 14510457 14510758 -228153595 + AluY SINE Alu 1 301 -10 2110 72 97 27 chr1 14510758 14511025 -228153328 - THE1A LTR MaLR -58 297 1 11804 77 10 1 chr1 14511025 14512591 -228151762 - THE1A-int LTR MaLR 0 1580 1 2621 68 11 0 chr1 14512591 14512942 -228151411 - THE1A LTR MaLR 0 355 1 380 314 8 57 chr1 14512943 14513067 -228151286 - MIR SINE MIR -61 147 30 309 245 154 37 chr1 14513119 14513307 -228151046 + MIR SINE MIR 24 233 -29 2454 103 3 0 chr1 14514608 14514919 -228149434 - AluSx SINE Alu 0 312 1 418 324 14 14 chr1 14515282 14515427 -228148926 + L2 LINE L2 3153 3297 -16 261 83 0 0 chr1 14515427 14515463 -228148890 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2354 66 24 0 chr1 14515756 14516043 -228148310 - AluY SINE Alu -17 294 1 351 228 118 118 chr1 14516340 14516452 -228147901 + MIR SINE MIR 19 130 -132 2135 114 45 0 chr1 14516452 14516741 -228147612 - AluSx SINE Alu -10 302 1 351 228 118 118 chr1 14516741 14516865 -228147488 + MIR SINE MIR 129 255 -7 2412 76 7 0 chr1 14517357 14517645 -228146708 + AluSq SINE Alu 1 290 -23 332 224 30 0 chr1 14518717 14518784 -228145569 - L2 LINE L2 -4 3268 3200 378 240 47 113 chr1 14519163 14519257 -228145096 + MLT1K LTR MaLR 442 524 -64 1232 196 6 91 chr1 14519257 14519599 -228144754 - AluSq SINE Alu 0 313 1 378 240 47 113 chr1 14519599 14519654 -228144699 + MLT1K LTR MaLR 524 581 -7 787 240 75 37 chr1 14519728 14519982 -228144371 + MLT1H LTR MaLR 1 305 -244 3626 135 0 11 chr1 14519998 14520552 -228143801 - L1PB1 LINE L1 -55 6096 5549 253 138 0 52 chr1 14520548 14520606 -228143747 + L1PB1 LINE L1 6097 6151 0 * 577 239 150 14 chr1 14520695 14520908 -228143445 + MLT1H LTR MaLR 309 550 -5 762 270 52 9 chr1 14521310 14521521 -228142832 + MIR SINE MIR 37 256 -6 2497 57 0 0 chr1 14521934 14522235 -228142118 + AluY SINE Alu 1 301 -10 364 324 0 0 chr1 14522419 14522521 -228141832 + MIR SINE MIR 90 191 -71 823 253 65 0 chr1 14522535 14522721 -228141632 + MER58A DNA MER1_type 1 198 -26 413 200 0 0 chr1 14522753 14522818 -228141535 - MER2 DNA MER2_type 0 345 281 186 167 0 0 chr1 14522818 14522854 -228141499 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 1688 186 4 0 chr1 14522880 14523160 -228141193 - AluJo SINE Alu -31 281 1 660 244 55 12 chr1 14523215 14523379 -228140974 - MIR SINE MIR -83 179 9 1117 161 14 67 chr1 14523644 14523794 -228140559 + MER20 DNA MER1_type 9 145 -74 2093 104 3 0 chr1 14523794 14524083 -228140270 + AluSx SINE Alu 1 290 -22 1117 161 14 67 chr1 14524083 14524155 -228140198 + MER20 DNA MER1_type 145 219 0 1413 205 41 62 chr1 14524638 14524740 -228139613 + L1ME2 LINE L1 5724 5827 -337 2233 104 0 3 chr1 14524740 14525049 -228139304 - AluSg SINE Alu -2 308 1 1413 205 41 62 chr1 14525049 14525368 -228138985 + L1ME2 LINE L1 5827 6135 -29 385 253 35 0 chr1 14525369 14525456 -228138897 + MLT1F1 LTR MaLR 2 91 -451 418 155 14 0 chr1 14525456 14525527 -228138826 - MLT1B LTR MaLR 0 390 319 716 155 0 39 chr1 14525545 14525674 -228138679 - FLAM_C SINE Alu -14 129 6 1426 123 40 4 chr1 14525674 14525901 -228138452 - MLT1B LTR MaLR -62 328 94 1951 73 0 8 chr1 14525901 14526161 -228138192 + AluY SINE Alu 50 307 -4 1216 134 0 0 chr1 14526165 14526351 -228138002 + AluSg/x SINE Alu 127 312 0 574 130 33 0 chr1 14526364 14526456 -228137897 - MLT1B LTR MaLR -295 95 1 1824 209 47 23 chr1 14526469 14526916 -228137437 + MLT1F1 LTR MaLR 107 567 0 1636 110 118 15 chr1 14527105 14527377 -228136976 + AluSg1 SINE Alu 1 300 -9 2121 66 3 72 chr1 14527473 14527792 -228136561 + AluY SINE Alu 1 297 -14 182 183 67 100 chr1 14528389 14528449 -228135904 + MIR SINE MIR 120 177 -85 400 223 57 57 chr1 14528576 14528751 -228135602 + L1ME4a LINE L1 5947 6121 0 1718 165 3 13 chr1 14529199 14529508 -228134845 + AluJb SINE Alu 1 306 -6 213 273 0 45 chr1 14529511 14529577 -228134776 + L2 LINE L2 3026 3088 -184 261 300 22 0 chr1 14529594 14529684 -228134669 - MIR SINE MIR -7 255 164 351 235 53 83 chr1 14529747 14529879 -228134474 + L2 LINE L2 3177 3304 -9 189 253 27 40 chr1 14529984 14530059 -228134294 + L2 LINE L2 3159 3232 -40 258 256 136 50 chr1 14530217 14530402 -228133951 - MIR SINE MIR -39 223 19 2548 97 8 21 chr1 14530799 14531179 -228133174 + THE1C LTR MaLR 1 375 0 268 164 18 18 chr1 14531808 14531863 -228132490 + MLT1K LTR MaLR 192 246 -342 1823 165 3 0 chr1 14531963 14532266 -228132087 - AluJb SINE Alu -8 304 1 2570 150 24 0 chr1 14532271 14532724 -228131629 - L1MB2 LINE L1 0 6171 5708 2112 92 0 3 chr1 14532923 14533236 -228131117 - AluSq SINE Alu 0 313 2 259 58 0 77 chr1 14533530 14533582 -228130771 + (TTTC)n Simple_repeat Simple_repeat 4 51 0 2431 54 3 0 chr1 14533990 14534288 -228130065 - AluY SINE Alu -12 299 1 435 305 104 18 chr1 14534333 14534544 -228129809 - MIR SINE MIR -29 233 20 3658 192 36 52 chr1 14534829 14535144 -228129209 - MER63C DNA MER1_type -130 930 611 2885 186 0 4 chr1 14535144 14535632 -228128721 + MER66B LTR ERV1 1 486 0 3658 192 36 52 chr1 14535632 14536193 -228128160 - MER63C DNA MER1_type -449 611 68 1250 205 37 13 chr1 14536335 14536667 -228127686 + L1MD3 LINE L1 6777 7124 -661 2081 137 0 3 chr1 14536702 14537009 -228127344 - AluSx SINE Alu -6 306 1 664 251 89 0 chr1 14538661 14538840 -228125513 + MLT1K LTR MaLR 117 311 -277 180 0 0 0 chr1 14538912 14538932 -228125421 + (T)n Simple_repeat Simple_repeat 1 20 0 726 71 9 9 chr1 14538934 14539047 -228125306 - LTR9B LTR ERV1 -86 558 446 * 747 143 20 122 chr1 14539026 14539222 -228125131 + MLT1K LTR MaLR 404 579 -9 2092 95 0 0 chr1 14539737 14540011 -228124342 + AluSx SINE Alu 25 298 -14 590 242 107 70 chr1 14540191 14540215 -228124138 + MIR SINE MIR 2 24 -238 931 198 127 0 chr1 14540215 14540412 -228123941 - MER58A DNA MER1_type -2 222 1 590 242 107 70 chr1 14540412 14540631 -228123722 + MIR SINE MIR 24 254 -8 314 228 120 43 chr1 14540911 14541003 -228123350 + MIR SINE MIR 29 127 -81 309 221 91 0 chr1 14541583 14541660 -228122693 + MER91C DNA MER1_type 22 105 -35 1825 126 35 3 chr1 14541682 14541968 -228122385 - AluSx SINE Alu -17 295 1 559 301 18 0 chr1 14542218 14542384 -228121969 - MIR SINE MIR -30 232 64 2436 48 0 0 chr1 14543225 14543518 -228120835 + AluY SINE Alu 1 293 -18 636 223 40 7 chr1 14543627 14543775 -228120578 + MIR SINE MIR 71 223 -39 2063 97 3 17 chr1 14543862 14544161 -228120192 - AluSx SINE Alu -17 295 1 2542 185 12 18 chr1 14544271 14544773 -228119580 + L1MB3 LINE L1 5683 6181 -2 596 219 0 58 chr1 14544818 14544973 -228119380 + L1MB7 LINE L1 6029 6174 -10 630 238 6 55 chr1 14544984 14545165 -228119188 + L1MA10 LINE L1 6163 6334 0 353 236 32 32 chr1 14545165 14545288 -228119065 - L1MC/D LINE L1 -1999 5809 5687 477 190 40 10 chr1 14546260 14546386 -228117967 - MIR SINE MIR -43 165 32 236 75 0 25 chr1 14546498 14546538 -228117815 + (TTTTTA)n Simple_repeat Simple_repeat 3 41 0 247 269 17 42 chr1 14546646 14546683 -228117670 - HAL1b LINE L1 -36 1312 1276 300 242 82 41 chr1 14546683 14546877 -228117476 - L1ME4a LINE L1 -86 6035 1197 1851 110 62 0 chr1 14547164 14547323 -228117030 - AluSg SINE Alu -20 290 106 2311 72 0 0 chr1 14547323 14547614 -228116739 - AluY SINE Alu -5 306 16 1851 110 62 0 chr1 14547614 14547727 -228116626 - AluSg SINE Alu -204 106 1 21 36 0 0 chr1 14547889 14547917 -228116436 + AT_rich Low_complexity Low_complexity 1 28 0 523 241 154 18 chr1 14547929 14548149 -228116204 - MIR SINE MIR 0 262 13 3837 229 25 12 chr1 14548195 14548276 -228116077 + L1M4 LINE L1 2315 2393 -3753 2035 115 20 3 chr1 14548276 14548571 -228115782 + AluSx SINE Alu 1 300 -12 3837 229 25 12 chr1 14548571 14549491 -228114862 + L1M4 LINE L1 2393 3329 -2817 7929 18 0 1 chr1 14549527 14550490 -228113863 + L1PA3 LINE L1 5191 6152 -3 383 157 52 29 chr1 14550524 14550696 -228113657 + (TA)n Simple_repeat Simple_repeat 2 177 0 2209 251 11 5 chr1 14550714 14551271 -228113082 + L1M4 LINE L1 3329 3888 -2258 797 136 53 0 chr1 14551280 14551449 -228112904 - L1MC/D LINE L1 -908 5436 5259 3209 144 43 36 chr1 14551451 14552082 -228112271 + L1MC2 LINE L1 5695 6329 -15 1612 189 17 0 chr1 14552082 14552384 -228111969 + AluJo SINE Alu 1 307 -5 2305 90 3 0 chr1 14552497 14552797 -228111556 - AluSx SINE Alu -11 301 1 465 329 13 0 chr1 14553156 14553308 -228111045 - MIR SINE MIR -6 256 103 7517 182 21 23 chr1 14553308 14553908 -228110445 + L1MB2 LINE L1 3637 4237 -1934 279 79 0 0 chr1 14553908 14553946 -228110407 + (CA)n Simple_repeat Simple_repeat 1 38 0 7517 182 21 23 chr1 14553946 14554666 -228109687 + L1MB2 LINE L1 4237 4957 -1214 2436 74 0 0 chr1 14554666 14554976 -228109377 + AluY SINE Alu 1 310 -1 7517 182 21 23 chr1 14554976 14555919 -228108434 + L1MB2 LINE L1 4957 5897 -274 735 132 9 0 chr1 14555927 14556033 -228108320 + FLAM_C SINE Alu 12 118 -25 727 273 20 20 chr1 14556033 14556231 -228108122 + MIR SINE MIR 64 261 -1 412 263 46 26 chr1 14556235 14556387 -228107966 + MIR SINE MIR 20 174 -88 204 40 0 0 chr1 14556448 14556473 -228107880 + (TG)n Simple_repeat Simple_repeat 1 25 0 826 190 0 0 chr1 14556476 14556618 -228107735 - FAM SINE Alu -26 159 18 820 227 29 19 chr1 14557164 14557371 -228106982 + MIR SINE MIR 39 247 -15 2509 236 23 18 chr1 14557522 14558095 -228106258 + MLT1E2 LTR MaLR 1 576 -50 373 260 179 27 chr1 14558108 14558331 -228106022 - MIR SINE MIR -1 261 5 531 238 16 88 chr1 14559031 14559224 -228105129 + MIR SINE MIR 40 218 -44 3414 153 9 102 chr1 14559350 14559607 -228104746 + L1MB3 LINE L1 5445 5724 -459 2127 92 0 10 chr1 14559607 14559902 -228104451 + AluSx SINE Alu 9 300 -12 3414 153 9 102 chr1 14559902 14560345 -228104008 + L1MB3 LINE L1 5724 6065 -118 1822 140 0 14 chr1 14560345 14560631 -228103722 + AluSx SINE Alu 1 282 -30 3414 153 9 102 chr1 14560631 14560725 -228103628 + L1MB3 LINE L1 6065 6166 -17 358 318 175 21 chr1 14561112 14561398 -228102955 + L1ME4a LINE L1 5398 5727 -2081 2222 89 23 0 chr1 14561813 14562115 -228102238 - AluSx SINE Alu -3 309 1 198 278 28 42 chr1 14562168 14562240 -228102113 + MER5A DNA MER1_type 61 131 -58 474 266 179 24 chr1 14562498 14562750 -228101603 + L2 LINE L2 2671 2961 -353 336 266 39 52 chr1 14563030 14563184 -228101169 + L1ME4a LINE L1 5964 6115 -6 608 259 207 0 chr1 14564034 14564227 -228100126 - MIR SINE MIR -12 250 18 2176 257 35 27 chr1 14564479 14565211 -228099142 + L1M4 LINE L1 3954 4691 -1455 369 0 0 0 chr1 14565296 14565337 -228099016 + (CA)n Simple_repeat Simple_repeat 2 42 0 560 203 42 14 chr1 14565343 14565486 -228098867 + L1MD2 LINE L1 6203 6349 -10 2150 202 68 7 chr1 14565894 14566349 -228098004 + MER66B LTR ERV1 1 483 -3 596 190 177 21 chr1 14567097 14567186 -228097167 + MIR SINE MIR 60 134 -128 1798 142 59 0 chr1 14567186 14567474 -228096879 - AluJb SINE Alu -7 305 1 596 190 177 21 chr1 14567474 14567543 -228096810 + MIR SINE MIR 134 243 -19 832 153 28 0 chr1 14567642 14567786 -228096567 - FRAM SINE Alu -26 150 3 350 269 58 58 chr1 14567967 14568175 -228096178 - L1MC4 LINE L1 -1 8041 7834 636 218 78 0 chr1 14568428 14568570 -228095783 - MIR SINE MIR -7 255 103 1962 238 42 26 chr1 14569422 14569592 -228094761 + LTR40a LTR ERVL 11 177 -342 2216 113 0 19 chr1 14569592 14569901 -228094452 + AluSx SINE Alu 1 303 -9 1962 238 42 26 chr1 14569901 14570231 -228094122 + LTR40a LTR ERVL 177 519 0 296 198 86 37 chr1 14570231 14570312 -228094041 + L2 LINE L2 3187 3271 -1 315 284 23 0 chr1 14571387 14571489 -228092864 - MIR SINE MIR -62 146 42 1946 130 167 34 chr1 14572145 14572523 -228091830 + MSTA LTR MaLR 1 428 0 404 289 20 47 chr1 14572597 14572746 -228091607 - MER5A DNA MER1_type -26 163 19 343 267 60 9 chr1 14572921 14573037 -228091316 + L2 LINE L2 2916 3037 -276 335 249 99 24 chr1 14573057 14573202 -228091151 + L1M4 LINE L1 3048 3202 -2944 2739 135 26 2 chr1 14573237 14573659 -228090694 + MSTB1 LTR MaLR 1 432 0 532 164 0 113 chr1 14573660 14573819 -228090534 + L2 LINE L2 3130 3270 -43 246 221 91 26 chr1 14574521 14574598 -228089755 - MIR SINE MIR -133 129 48 433 266 93 7 chr1 14575518 14575657 -228088696 + MIR SINE MIR 112 262 0 438 310 16 12 chr1 14576081 14576226 -228088127 - MIR SINE MIR -46 162 20 2443 77 0 0 chr1 14576232 14576532 -228087821 - AluSg SINE Alu -10 300 1 1187 188 18 98 chr1 14576637 14576799 -228087554 - L1ME3A LINE L1 -68 6102 5978 1754 142 36 4 chr1 14576799 14577112 -228087241 - AluSq SINE Alu 0 322 1 1187 188 18 98 chr1 14577112 14577284 -228087069 - L1ME3A LINE L1 -192 5978 5794 1842 180 58 116 chr1 14577284 14577500 -228086853 - MLT1E LTR MaLR 0 593 366 2437 97 0 0 chr1 14577500 14577808 -228086545 - AluSg SINE Alu -2 308 1 1842 180 58 116 chr1 14577808 14577824 -228086529 - MLT1E LTR MaLR -227 366 351 1860 169 10 16 chr1 14577824 14578138 -228086215 - AluJo SINE Alu 0 312 1 1842 180 58 116 chr1 14578138 14578488 -228085865 - MLT1E LTR MaLR -242 351 44 677 280 11 0 chr1 14578505 14578687 -228085666 - L1ME3A LINE L1 -479 5691 5508 218 293 24 24 chr1 14578774 14578856 -228085497 - MER5A DNA MER1_type -46 143 62 * 317 314 68 25 chr1 14578840 14578868 -228085485 + L2 LINE L2 3191 3216 -97 2351 115 0 3 chr1 14578868 14579180 -228085173 - AluSx SINE Alu -1 311 1 317 314 68 25 chr1 14579180 14579269 -228085084 + L2 LINE L2 3216 3313 0 1814 167 3 3 chr1 14579278 14579560 -228084793 + AluJo SINE Alu 1 282 -30 2273 116 7 0 chr1 14580215 14580516 -228083837 - AluSg SINE Alu -7 303 1 247 368 11 28 chr1 14580988 14581170 -228083183 - L2 LINE L2 -209 3063 2885 2725 99 8 0 chr1 14581303 14581675 -228082678 - THE1C LTR MaLR 0 375 1 999 268 32 59 chr1 14581676 14582205 -228082148 - MLT1K LTR MaLR -37 551 5 305 275 14 49 chr1 14582257 14582399 -228081954 + Charlie8 DNA MER1_type 119 255 -2162 2311 100 10 0 chr1 14582584 14582884 -228081469 + AluSx SINE Alu 1 303 -9 4384 171 71 23 chr1 14582884 14583512 -228080841 - L1PA16 LINE L1 -11 6138 5542 183 42 0 0 chr1 14583512 14583536 -228080817 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4384 171 71 23 chr1 14583536 14584047 -228080306 - L1PA16 LINE L1 -607 5542 461 3015 135 29 38 chr1 14584418 14584829 -228079524 + L1PA16 LINE L1 5623 6029 -137 2441 93 0 3 chr1 14584829 14585140 -228079213 + AluY SINE Alu 1 310 -1 3015 135 29 38 chr1 14585140 14585276 -228079077 + L1PA16 LINE L1 6029 6165 -1 936 277 88 44 chr1 14585435 14586048 -228078305 - L1MC5 LINE L1 -62 7899 7260 2053 159 0 0 chr1 14586180 14586488 -228077865 - AluSx SINE Alu -2 310 3 2674 147 9 0 chr1 14586498 14586926 -228077427 - L1MB2 LINE L1 -2 6169 5738 2144 140 0 0 chr1 14586934 14587234 -228077119 - AluSx SINE Alu -12 300 1 659 223 52 85 chr1 14587234 14587396 -228076957 - L1MC4 LINE L1 -733 7228 7062 1975 166 3 0 chr1 14587396 14587697 -228076656 - AluJb SINE Alu -10 302 1 659 223 52 85 chr1 14587697 14587947 -228076406 - L1MC4 LINE L1 -899 7062 6855 801 154 39 133 chr1 14588302 14588536 -228075817 + MER20 DNA MER1_type 6 217 -2 2131 119 34 0 chr1 14588923 14589218 -228075135 - AluSx SINE Alu -7 305 1 2506 66 0 10 chr1 14589485 14589790 -228074563 - AluY SINE Alu -9 302 1 2152 136 0 7 chr1 14590186 14590495 -228073858 + AluSx SINE Alu 4 310 -2 870 148 164 5 chr1 14591052 14591241 -228073112 - MER20 DNA MER1_type 0 219 1 246 305 42 0 chr1 14592132 14592227 -228072126 + MIR3 SINE MIR 66 164 -44 237 204 0 0 chr1 14592328 14592372 -228071981 - MER103 DNA DNA -46 120 77 449 241 170 54 chr1 14592372 14592666 -228071687 + L2 LINE L2 2959 3286 -27 585 161 0 28 chr1 14593401 14593544 -228070809 + C-rich Low_complexity Low_complexity 2 140 0 1950 142 25 0 chr1 14593544 14593826 -228070527 - AluSx SINE Alu -23 289 1 367 233 97 19 chr1 14594610 14594713 -228069640 + L2 LINE L2 3203 3313 0 2140 120 3 23 chr1 14594949 14595258 -228069095 + AluSq SINE Alu 1 303 -10 289 250 11 0 chr1 14595962 14596050 -228068303 + L1ME3A LINE L1 5857 5945 -225 1684 166 52 3 chr1 14596131 14596250 -228068103 + AluJo SINE Alu 1 113 -199 357 24 0 0 chr1 14596250 14596292 -228068061 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1684 166 52 3 chr1 14596292 14596462 -228067891 + AluJo SINE Alu 113 304 -8 395 286 46 38 chr1 14596621 14596874 -228067479 + L2 LINE L2 2731 2992 -280 32 43 0 0 chr1 14596875 14596921 -228067432 + AT_rich Low_complexity Low_complexity 1 46 0 1645 119 0 37 chr1 14596945 14597188 -228067165 - AluJo SINE Alu -78 234 1 548 279 56 78 chr1 14597210 14597529 -228066824 + L2 LINE L2 3002 3313 0 331 250 62 54 chr1 14598933 14599045 -228065308 - MIR SINE MIR -141 121 9 219 167 0 0 chr1 14599150 14599192 -228065161 + CT-rich Low_complexity Low_complexity 1 42 0 204 125 0 0 chr1 14599236 14599268 -228065085 + (TTCCC)n Simple_repeat Simple_repeat 4 35 0 1810 159 27 3 chr1 14599270 14599565 -228064788 - AluJo SINE Alu -1 311 10 468 327 204 0 chr1 14599743 14599954 -228064399 - MIR SINE MIR -7 255 2 560 244 18 60 chr1 14600718 14600886 -228063467 - MIR SINE MIR -39 223 63 2225 80 0 4 chr1 14600981 14601256 -228063097 - AluSx SINE Alu -38 274 1 357 283 76 28 chr1 14601588 14601733 -228062620 + MIR SINE MIR 22 173 -89 947 272 174 22 chr1 14601771 14601967 -228062386 - L2 LINE L2 0 3313 3148 2326 81 0 29 chr1 14601967 14602275 -228062078 + AluSg SINE Alu 1 299 -11 947 272 174 22 chr1 14602275 14602446 -228061907 - L2 LINE L2 -165 3148 2890 188 226 196 10 chr1 14602570 14602672 -228061681 - MIR3 SINE MIR -83 125 5 1717 208 65 36 chr1 14602700 14603169 -228061184 + MLT1D LTR MaLR 3 384 -6 313 178 6 86 chr1 14604056 14604219 -228060134 + T-rich Low_complexity Low_complexity 5 154 0 441 294 61 6 chr1 14604275 14604438 -228059915 - MIR SINE MIR -61 201 30 2098 163 5 33 chr1 14604864 14605095 -228059258 - MLT1B LTR MaLR 0 390 173 1570 148 37 4 chr1 14605095 14605339 -228059014 - AluJb SINE Alu -5 307 56 2098 163 5 33 chr1 14605339 14605505 -228058848 - MLT1B LTR MaLR -217 173 4 2281 100 0 7 chr1 14606093 14606392 -228057961 + AluSq SINE Alu 1 297 -16 2322 92 0 3 chr1 14606810 14607102 -228057251 + AluSx SINE Alu 1 291 -21 1431 228 76 57 chr1 14607120 14607593 -228056760 + MLT1J LTR MaLR 15 496 -15 262 160 0 0 chr1 14607788 14607843 -228056510 + MIR SINE MIR 101 154 -108 959 254 196 15 chr1 14608152 14608561 -228055792 + MLT1K LTR MaLR 9 491 -97 668 224 0 0 chr1 14608875 14608991 -228055362 + FLAM_C SINE Alu 2 117 -26 279 79 0 0 chr1 14609111 14609149 -228055204 + (CA)n Simple_repeat Simple_repeat 1 38 0 586 250 12 44 chr1 14609149 14609309 -228055044 + MER63A DNA MER1_type 54 208 -2 245 279 207 0 chr1 14609725 14609836 -228054517 + MIR SINE MIR 17 150 -112 991 170 53 74 chr1 14610056 14610296 -228054057 + MER33 DNA MER1_type 48 283 -2302 2061 131 3 31 chr1 14610296 14610616 -228053737 + AluJb SINE Alu 1 311 -1 991 170 53 74 chr1 14610616 14610658 -228053695 + MER33 DNA MER1_type 283 324 0 749 192 91 19 chr1 14611176 14611384 -228052969 + Charlie5 DNA MER1_type 2360 2582 -30 393 235 50 34 chr1 14611391 14611510 -228052843 + L2 LINE L2 3193 3313 0 2163 83 87 14 chr1 14611671 14611960 -228052393 + AluSx SINE Alu 1 310 -2 2321 101 3 7 chr1 14612777 14613085 -228051268 + AluSg1 SINE Alu 1 307 -2 268 343 10 0 chr1 14613897 14613996 -228050357 + MIR SINE MIR 64 163 -99 1757 181 66 97 chr1 14614146 14614441 -228049912 - MLT1D LTR MaLR -18 487 213 2285 113 0 0 chr1 14614441 14614752 -228049601 + AluY SINE Alu 1 311 0 1757 181 66 97 chr1 14614752 14614959 -228049394 - MLT1D LTR MaLR -292 213 1 372 344 26 0 chr1 14615231 14615382 -228048971 - MIR SINE MIR -95 167 13 1952 121 3 52 chr1 14616172 14616477 -228047876 + AluSx SINE Alu 1 290 -22 462 258 177 39 chr1 14617120 14617453 -228046900 + MLT1K LTR MaLR 137 515 -73 250 303 122 25 chr1 14618640 14618878 -228045475 + L2 LINE L2 2579 2839 -475 231 262 136 19 chr1 14618885 14618988 -228045365 - MIR SINE MIR -56 206 92 322 245 11 43 chr1 14620055 14620149 -228044204 + MIR3 SINE MIR 115 205 -3 1034 183 39 10 chr1 14620529 14620737 -228043616 - MER20 DNA MER1_type 0 219 6 662 327 92 6 chr1 14620808 14621154 -228043199 + L2 LINE L2 2493 2868 -446 185 208 151 0 chr1 14621149 14621202 -228043151 + MER5A DNA MER1_type 9 69 -120 * 2070 91 54 0 chr1 14621203 14621479 -228042874 + AluSc SINE Alu 1 291 -18 270 136 0 0 chr1 14621482 14621526 -228042827 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 198 204 23 0 chr1 14621526 14621570 -228042783 + MER5A DNA MER1_type 61 105 -84 405 258 62 113 chr1 14621917 14622192 -228042161 - MIR SINE MIR 0 262 2 2025 145 0 14 chr1 14622465 14622762 -228041591 + AluSx SINE Alu 1 293 -19 427 248 16 7 chr1 14622920 14623054 -228041299 - MIR SINE MIR -62 146 52 478 248 44 22 chr1 14623134 14623271 -228041082 - MIR SINE MIR -75 187 48 2202 110 0 3 chr1 14623320 14623648 -228040705 - AluSp SINE Alu 0 329 3 656 294 22 0 chr1 14624251 14624435 -228039918 - MIR SINE MIR 0 262 75 651 262 82 0 chr1 14624573 14624756 -228039597 + MIR SINE MIR 1 198 -64 282 325 17 26 chr1 14624793 14624910 -228039443 - MIR SINE MIR -91 171 56 207 268 49 41 chr1 14625378 14625501 -228038852 + MER5A DNA MER1_type 17 140 -49 1093 234 105 72 chr1 14625514 14625727 -228038626 - L1ME2 LINE L1 -10 6154 5950 1992 144 10 3 chr1 14625727 14626026 -228038327 - AluJb SINE Alu -11 301 1 1093 234 105 72 chr1 14626026 14626355 -228037998 - L1ME2 LINE L1 -214 5950 5594 377 235 12 0 chr1 14626810 14626895 -228037458 + MIR SINE MIR 81 166 -96 430 277 73 7 chr1 14627009 14627146 -228037207 + MER5A DNA MER1_type 40 185 -4 198 0 0 0 chr1 14627817 14627839 -228036514 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 452 273 181 42 chr1 14628221 14628459 -228035894 + Charlie8 DNA MER1_type 5 275 -2142 183 267 12 93 chr1 14628795 14628881 -228035472 - L2 LINE L2 -6 3307 3229 614 296 178 15 chr1 14629332 14629635 -228034718 - L2 LINE L2 0 3313 2948 2337 108 22 11 chr1 14629635 14629995 -228034358 + THE1B LTR MaLR 1 364 0 614 296 178 15 chr1 14629995 14630029 -228034324 - L2 LINE L2 -365 2948 2921 2342 122 0 0 chr1 14630098 14630410 -228033943 - AluSq SINE Alu -1 312 1 1479 168 75 46 chr1 14630540 14630886 -228033467 + MLT1A2 LTR MaLR 8 363 -11 1661 191 17 7 chr1 14630985 14631283 -228033070 + AluJo SINE Alu 1 301 -11 2587 71 3 3 chr1 14632007 14632316 -228032037 + AluSq SINE Alu 1 309 -4 449 151 0 0 chr1 14632527 14632600 -228031753 - Tigger7 DNA MER2_type -14 2573 2501 1425 226 0 0 chr1 14632615 14632880 -228031473 - Tigger7 DNA MER2_type -2222 265 1 406 254 9 18 chr1 14632890 14633002 -228031351 - MIR SINE MIR -87 121 15 252 207 23 23 chr1 14633032 14633119 -228031234 + CT-rich Low_complexity Low_complexity 1 87 0 2053 135 0 35 chr1 14633119 14633431 -228030922 - AluJb SINE Alu -9 303 3 477 253 40 27 chr1 14633458 14633608 -228030745 - MER5A DNA MER1_type 0 189 38 1465 220 94 3 chr1 14633746 14634087 -228030266 + MLT2E LTR ERVL 1 372 -256 355 268 65 16 chr1 14634120 14634243 -228030110 + MLT2E LTR ERVL 488 616 -12 733 154 9 154 chr1 14634291 14634511 -228029842 + MER5A DNA MER1_type 1 188 -1 2172 55 0 0 chr1 14634540 14634793 -228029560 + AluY SINE Alu 41 293 -18 651 144 0 9 chr1 14634803 14634914 -228029439 + L1MB4 LINE L1 6031 6140 -40 1673 113 169 15 chr1 14634915 14635181 -228029172 + AluSx SINE Alu 1 307 -5 239 309 154 45 chr1 14635546 14635883 -228028470 - L1ME4a LINE L1 -17 6104 5731 265 176 0 0 chr1 14636325 14636376 -228027977 + MIR SINE MIR 41 91 -171 274 98 0 59 chr1 14636421 14636472 -228027881 + MLT1J1 LTR MaLR 286 333 -113 210 244 0 0 chr1 14637139 14637180 -228027173 + polypyrimidine Low_complexity Low_complexity 3 43 0 357 262 71 76 chr1 14637407 14637617 -228026736 + HAL1 LINE L1 2299 2507 0 2032 203 74 25 chr1 14637913 14638171 -228026182 + L1ME1 LINE L1 5574 5818 -348 2701 51 0 0 chr1 14638171 14638482 -228025871 - AluY SINE Alu 0 311 1 2032 203 74 25 chr1 14638482 14638774 -228025579 + L1ME1 LINE L1 5818 6151 -15 2160 133 7 0 chr1 14638788 14639089 -228025264 - AluSx SINE Alu -9 303 1 310 271 124 38 chr1 14639368 14639578 -228024775 - L1ME4a LINE L1 -6 6115 5888 588 107 24 0 chr1 14639583 14639667 -228024686 - AluSg/x SINE Alu -21 291 206 318 361 64 5 chr1 14639699 14639918 -228024435 - L1ME4a LINE L1 -259 5862 5631 26 30 0 0 chr1 14640059 14640092 -228024261 + AT_rich Low_complexity Low_complexity 1 33 0 745 214 65 0 chr1 14640204 14640358 -228023995 - AluJb SINE Alu -12 300 137 304 290 85 80 chr1 14640370 14640427 -228023926 - L1ME4a LINE L1 -813 5333 5278 2603 78 0 0 chr1 14640427 14640736 -228023617 + AluSc SINE Alu 1 309 0 304 290 85 80 chr1 14640736 14640902 -228023451 - L1ME4a LINE L1 -868 5278 5109 2684 172 21 71 chr1 14640929 14641398 -228022955 + L1MD3 LINE L1 7415 7849 -146 2331 82 0 4 chr1 14641398 14641679 -228022674 + AluSx SINE Alu 1 280 -32 2684 172 21 71 chr1 14641679 14641818 -228022535 + L1MD3 LINE L1 7849 7993 -2 335 228 119 40 chr1 14641864 14641965 -228022388 - L1ME4a LINE L1 -385 5736 5628 357 270 22 113 chr1 14642257 14642442 -228021911 + L2 LINE L2 3140 3307 -6 3286 142 20 12 chr1 14642485 14643011 -228021342 - L1MB3 LINE L1 -2 6181 5661 1110 159 269 45 chr1 14643011 14643066 -228021287 + MSTB1 LTR MaLR 1 42 -390 2164 125 10 0 chr1 14643066 14643361 -228020992 + AluSx SINE Alu 1 298 -14 1110 159 269 45 chr1 14643361 14643585 -228020768 + MSTB1 LTR MaLR 42 215 -217 2256 80 28 0 chr1 14643585 14643871 -228020482 - AluSc SINE Alu -15 294 1 1110 159 269 45 chr1 14643871 14643943 -228020410 + MSTB1 LTR MaLR 215 432 0 3286 142 20 12 chr1 14643943 14644006 -228020347 - L1MB3 LINE L1 -522 5661 5587 2068 131 10 0 chr1 14644012 14644303 -228020050 - AluSx SINE Alu -18 294 1 291 323 61 24 chr1 14644412 14644576 -228019777 + L2 LINE L2 2912 3081 -191 2393 117 0 0 chr1 14644955 14645262 -228019091 + AluSx SINE Alu 2 308 -4 2126 87 0 0 chr1 14645716 14645980 -228018373 + AluSc SINE Alu 44 307 -2 409 290 75 11 chr1 14646532 14646718 -228017635 + MER112 DNA MER1_type 34 231 -29 767 153 0 0 chr1 14647435 14647553 -228016800 + FLAM_C SINE Alu 1 118 -15 367 304 152 0 chr1 14648029 14648167 -228016186 + MIR3 SINE MIR 40 198 -10 576 209 72 7 chr1 14648700 14648853 -228015500 + MIR3 SINE MIR 35 197 -11 202 351 0 0 chr1 14649595 14649652 -228014701 + L2 LINE L2 2682 2738 -576 329 250 43 33 chr1 14649665 14649757 -228014596 + L2 LINE L2 3215 3307 -6 236 244 37 0 chr1 14649859 14649941 -228014412 + L2 LINE L2 2905 2989 -283 348 116 227 0 chr1 14650089 14650166 -228014187 - MIR SINE MIR -37 171 70 24 0 0 0 chr1 14651374 14651398 -228012955 + GC_rich Low_complexity Low_complexity 1 24 0 201 243 0 0 chr1 14652101 14652138 -228012215 + (CGTG)n Simple_repeat Simple_repeat 1 37 0 499 305 57 24 chr1 14653329 14653539 -228010814 - MIR SINE MIR -25 237 21 209 188 21 21 chr1 14653601 14653649 -228010704 + L2 LINE L2 3265 3312 -1 500 304 110 0 chr1 14654244 14654435 -228009918 - MIR SINE MIR -44 218 7 1956 173 58 78 chr1 14654447 14654962 -228009391 + MLT1D LTR MaLR 1 505 0 438 285 22 95 chr1 14655105 14655284 -228009069 + MIR SINE MIR 49 214 -48 431 319 40 28 chr1 14655524 14655775 -228008578 + L1MC4a LINE L1 5632 5885 -1923 2134 107 27 10 chr1 14655803 14656102 -228008251 - AluSx SINE Alu -8 304 1 1782 170 0 30 chr1 14656418 14656718 -228007635 - AluJo SINE Alu -21 291 1 381 227 189 0 chr1 14657484 14657616 -228006737 - MLT1L LTR MaLR -326 289 133 1373 163 0 23 chr1 14657810 14658031 -228006322 - AluJo SINE Alu -91 221 6 606 258 94 30 chr1 14658314 14658562 -228005791 - MIR SINE MIR 0 262 5 950 184 43 19 chr1 14660036 14660243 -228004110 - MER20 DNA MER1_type -1 218 7 1848 155 10 3 chr1 14660252 14660543 -228003810 + AluJb SINE Alu 1 293 -19 417 342 0 0 chr1 14660665 14660782 -228003571 + MIR SINE MIR 30 146 -62 442 252 0 10 chr1 14660790 14660893 -228003460 + L2 LINE L2 3207 3308 -5 1510 172 71 88 chr1 14661066 14661178 -228003175 + L1MD2 LINE L1 5712 5824 -535 2002 143 0 13 chr1 14661178 14661485 -228002868 + AluSx SINE Alu 1 303 -9 1510 172 71 88 chr1 14661485 14661722 -228002631 + L1MD2 LINE L1 5824 6064 -295 5195 88 10 19 chr1 14661722 14662531 -228001822 - L1MA3 LINE L1 0 6305 5504 1510 172 71 88 chr1 14662531 14662547 -228001806 + L1MD2 LINE L1 6064 6079 -280 2204 117 0 23 chr1 14662547 14662855 -228001498 - AluSx SINE Alu -11 301 1 1510 172 71 88 chr1 14662855 14662940 -228001413 + L1MD2 LINE L1 6079 6156 -203 962 224 46 25 chr1 14662943 14663184 -228001169 + L1MD2 LINE L1 6102 6347 -12 405 284 142 42 chr1 14663583 14663844 -228000509 + MER102b DNA MER1_type 4 290 -51 2277 105 3 0 chr1 14663859 14664155 -228000198 - AluSg SINE Alu -13 297 1 227 265 31 41 chr1 14664810 14664908 -227999445 - MIR SINE MIR -118 144 48 2398 116 7 0 chr1 14665840 14666191 -227998162 - AluSx SINE Alu 0 353 1 613 253 13 0 chr1 14666375 14666529 -227997824 + MIR SINE MIR 8 163 -99 1382 86 11 0 chr1 14666600 14666774 -227997579 + AluSq SINE Alu 1 176 -137 * 1395 115 0 0 chr1 14666773 14666955 -227997398 + AluSg/x SINE Alu 112 293 -19 300 154 0 0 chr1 14666955 14667007 -227997346 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 1996 247 17 19 chr1 14667633 14667699 -227996654 - L1ME3 LINE L1 0 6162 6097 2349 107 0 0 chr1 14667699 14667997 -227996356 - AluSq SINE Alu -15 298 1 1996 247 17 19 chr1 14667997 14668461 -227995892 - L1ME3 LINE L1 -65 6097 5633 2119 121 0 0 chr1 14668670 14668974 -227995379 + AluSx SINE Alu 5 308 0 489 284 60 0 chr1 14669090 14669224 -227995129 - MIR3 SINE MIR -35 173 32 7706 78 14 3 chr1 14669231 14670190 -227994163 + LTR5 LTR ERVK 1 969 0 1185 150 38 0 chr1 14670339 14670552 -227993801 - L1PA16 LINE L1 0 6166 5946 2292 97 0 17 chr1 14670602 14670902 -227993451 + AluSx SINE Alu 1 295 -17 567 237 37 32 chr1 14670902 14671092 -227993261 + L2 LINE L2 2775 2965 -349 634 293 78 23 chr1 14671099 14671355 -227992998 - MLT1K LTR MaLR -138 450 181 211 244 0 0 chr1 14671443 14671488 -227992865 + (TAA)n Simple_repeat Simple_repeat 2 46 0 353 282 94 40 chr1 14671625 14671774 -227992579 + MER5B DNA MER1_type 1 157 -21 2490 102 19 8 chr1 14671784 14672155 -227992198 - THE1C LTR MaLR 0 375 1 193 266 25 25 chr1 14672183 14672262 -227992091 + MER5A DNA MER1_type 111 189 0 657 145 34 0 chr1 14672826 14672943 -227991410 + FLAM_C SINE Alu 2 122 -21 441 0 0 0 chr1 14672944 14672993 -227991360 + (TG)n Simple_repeat Simple_repeat 2 50 0 2268 113 7 0 chr1 14673095 14673388 -227990965 + AluSx SINE Alu 3 297 -15 809 154 0 0 chr1 14673848 14673971 -227990382 + FLAM_A SINE Alu 1 123 -10 690 248 6 12 chr1 14674004 14674165 -227990188 + MIR SINE MIR 103 262 0 1246 218 115 91 chr1 14674334 14674674 -227989679 - MLT1F1 LTR MaLR -2 565 190 243 0 0 0 chr1 14674674 14674701 -227989652 + (CA)n Simple_repeat Simple_repeat 2 28 0 1246 218 115 91 chr1 14674701 14674890 -227989463 - MLT1F1 LTR MaLR -377 190 7 512 200 0 0 chr1 14674971 14675056 -227989297 - AluJ/FLAM SINE Alu -226 86 2 1499 171 142 67 chr1 14675083 14675457 -227988896 + MER93a LTR ERV1 1 402 0 1414 199 67 103 chr1 14675549 14676071 -227988282 - MLT1D LTR MaLR 0 505 3 213 276 82 20 chr1 14676925 14677023 -227987330 + MER5A DNA MER1_type 39 142 -47 268 325 35 35 chr1 14677039 14677153 -227987200 - MER5B DNA MER1_type -62 116 3 * 400 275 63 14 chr1 14677153 14677273 -227987080 + L3 LINE CR1 907 1033 -544 471 258 138 6 chr1 14677282 14677449 -227986904 + MIR SINE MIR 48 236 -26 2377 90 0 10 chr1 14677671 14677972 -227986381 + AluSx SINE Alu 1 298 -14 225 218 18 36 chr1 14678792 14678847 -227985506 + L2 LINE L2 3219 3272 0 1543 148 45 36 chr1 14679221 14679752 -227984601 - LTR36 LTR ERV1 0 611 2 1644 201 60 5 chr1 14680037 14680405 -227983948 + MLT1B LTR MaLR 3 390 0 241 203 104 38 chr1 14681240 14681371 -227982982 - MIR SINE MIR -21 187 34 2209 116 0 0 chr1 14681554 14681846 -227982507 + AluSx SINE Alu 21 312 0 523 276 56 20 chr1 14682170 14682366 -227981987 + MIR SINE MIR 6 208 -54 822 186 0 14 chr1 14682367 14682512 -227981841 + MER20 DNA MER1_type 3 145 -74 960 131 0 14 chr1 14682522 14682667 -227981686 + FLAM_C SINE Alu 1 143 0 677 306 52 41 chr1 14683092 14683435 -227980918 + MLT1K LTR MaLR 214 560 -28 1267 168 37 144 chr1 14683445 14683819 -227980534 - MSTB LTR MaLR 0 426 93 818 60 0 0 chr1 14683819 14683919 -227980434 + AluY SINE Alu 212 311 0 698 147 0 0 chr1 14683919 14684028 -227980325 - MSTB LTR MaLR -319 109 1 967 209 14 24 chr1 14684184 14684395 -227979958 + MER3 DNA MER1_type 1 209 0 211 286 184 7 chr1 14684802 14684949 -227979404 + MIR SINE MIR 46 218 -44 210 222 37 0 chr1 14685686 14685740 -227978613 + L2 LINE L2 2920 2975 -338 1849 149 40 7 chr1 14685860 14686156 -227978197 + AluJo SINE Alu 1 306 -6 189 305 183 0 chr1 14686192 14686274 -227978079 + L2 LINE L2 3133 3229 -43 314 255 137 0 chr1 14686279 14686381 -227977972 + L2 LINE L2 2955 3070 -243 296 253 81 0 chr1 14686823 14686910 -227977443 + MER5A DNA MER1_type 9 102 -87 417 304 68 19 chr1 14687298 14687459 -227976894 + MIR SINE MIR 32 200 -62 292 279 93 16 chr1 14689692 14689821 -227974532 - MIR SINE MIR -57 205 67 201 182 239 0 chr1 14691140 14691228 -227973125 + MIR SINE MIR 75 183 -79 760 248 24 67 chr1 14691486 14691657 -227972696 + MIR SINE MIR 20 178 -84 1479 98 39 0 chr1 14691657 14691860 -227972493 + AluSg/x SINE Alu 84 294 -18 760 248 24 67 chr1 14691860 14691942 -227972411 + MIR SINE MIR 178 262 0 609 203 31 126 chr1 14692055 14692316 -227972037 - MER106B DNA MER1_type 0 1059 1 285 310 43 48 chr1 14692578 14692765 -227971588 - MER5A DNA MER1_type 0 189 4 405 0 0 0 chr1 14693153 14693198 -227971155 + (CA)n Simple_repeat Simple_repeat 2 46 0 470 293 113 9 chr1 14693229 14693451 -227970902 - MIR SINE MIR -17 245 1 1028 208 0 32 chr1 14693631 14693852 -227970501 + MER58A DNA MER1_type 2 215 -9 1835 102 8 42 chr1 14693950 14694214 -227970139 + AluSx SINE Alu 1 255 -57 293 0 0 26 chr1 14694230 14694268 -227970085 + (CAA)n Simple_repeat Simple_repeat 2 38 0 307 321 28 9 chr1 14694657 14694780 -227969573 - MIR3 SINE MIR -53 155 29 246 261 15 0 chr1 14694897 14694962 -227969391 + MIR SINE MIR 135 200 -62 792 186 4 4 chr1 14694962 14695740 -227968613 + (CA)n Simple_repeat Simple_repeat 1 778 0 672 209 0 0 chr1 14695771 14695948 -227968405 + (CA)n Simple_repeat Simple_repeat 2 178 0 289 276 41 0 chr1 14696028 14696126 -227968227 + MIR SINE MIR 45 146 -62 1810 147 57 0 chr1 14696146 14696425 -227967928 - AluJb SINE Alu -17 295 1 328 339 52 6 chr1 14696957 14697131 -227967222 - MIR SINE MIR -23 239 58 425 302 0 62 chr1 14697580 14697772 -227966581 - MIR SINE MIR -34 228 49 741 271 13 38 chr1 14697843 14698079 -227966274 - MIR SINE MIR -3 259 30 234 137 59 20 chr1 14698419 14698470 -227965883 + MIR SINE MIR 18 70 -138 1850 175 3 7 chr1 14699222 14699530 -227964823 - AluJo SINE Alu -5 307 1 297 322 56 39 chr1 14699538 14699718 -227964635 - MER5A DNA MER1_type -1 188 6 247 292 0 0 chr1 14699790 14699855 -227964498 + MIR3 SINE MIR 111 175 -33 2512 233 6 28 chr1 14699920 14700603 -227963750 + L1M4 LINE L1 3218 3885 -2261 354 331 44 0 chr1 14700603 14700739 -227963614 + MIR SINE MIR 59 200 -62 293 201 8 29 chr1 14701123 14701217 -227963136 + MIR SINE MIR 65 141 -67 2000 108 0 28 chr1 14702261 14702549 -227961804 - AluSg SINE Alu -30 280 1 195 291 76 13 chr1 14702707 14702786 -227961567 - MIR SINE MIR -105 103 20 195 316 60 45 chr1 14703112 14703245 -227961108 + L2 LINE L2 2925 3059 -213 24 0 0 0 chr1 14703297 14703321 -227961032 + AT_rich Low_complexity Low_complexity 1 24 0 383 207 29 0 chr1 14703541 14703681 -227960672 + (TGGA)n Simple_repeat Simple_repeat 3 146 0 528 187 7 13 chr1 14704212 14704367 -227959986 + GA-rich Low_complexity Low_complexity 1 154 0 437 283 69 26 chr1 14705664 14705897 -227958456 + L2 LINE L2 2578 2820 -494 215 291 128 50 chr1 14706113 14706292 -227958061 + L2 LINE L2 3118 3310 -3 203 296 75 80 chr1 14706400 14706613 -227957740 + L2 LINE L2 2966 3177 -95 491 290 119 0 chr1 14707390 14707566 -227956787 + MIR SINE MIR 59 255 -7 191 281 70 78 chr1 14707654 14707700 -227956653 + MIR SINE MIR 83 128 -134 2153 127 3 0 chr1 14707700 14707991 -227956362 - AluSq SINE Alu -21 292 1 191 281 70 78 chr1 14707991 14708072 -227956281 + MIR SINE MIR 128 209 -53 191 223 58 16 chr1 14708093 14708170 -227956183 - MIR SINE MIR -66 142 82 182 257 50 69 chr1 14708342 14708443 -227955910 - MIR3 SINE MIR -6 202 104 1404 176 44 78 chr1 14708604 14708991 -227955362 + MLT1A2 LTR MaLR 1 374 0 1673 126 75 36 chr1 14711602 14711935 -227952418 + MER4A LTR ERV1 1 346 -318 261 183 48 7 chr1 14711948 14712033 -227952320 + MER4A LTR ERV1 157 357 -218 494 140 207 26 chr1 14712056 14712197 -227952156 + MER4C LTR ERV1 300 610 0 373 290 56 0 chr1 14712341 14712498 -227951855 - L1MC4a LINE L1 -309 5812 5690 1800 161 0 11 chr1 14712753 14713033 -227951320 + AluSx SINE Alu 1 277 -35 336 64 0 0 chr1 14713037 14713084 -227951269 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 2562 64 6 6 chr1 14713153 14713466 -227950887 + AluSp SINE Alu 1 313 0 248 190 116 33 chr1 14713601 14713722 -227950631 + L1ME4a LINE L1 5985 6115 -6 2128 117 19 19 chr1 14713884 14714192 -227950161 + AluY SINE Alu 1 308 -3 203 250 0 0 chr1 14714379 14714435 -227949918 + (TG)n Simple_repeat Simple_repeat 1 56 0 188 147 0 0 chr1 14714655 14714689 -227949664 + MIR SINE MIR 106 139 -123 281 226 0 0 chr1 14715372 14715425 -227948928 + MIR SINE MIR 117 169 -93 395 309 55 55 chr1 14715468 14715798 -227948555 + MER65A LTR ERV1 1 330 -115 204 167 0 0 chr1 14716514 14716562 -227947791 + (TG)n Simple_repeat Simple_repeat 1 48 0 903 152 58 18 chr1 14717238 14717409 -227946944 + MER58A DNA MER1_type 2 179 -45 625 360 5 6 chr1 14717489 14717706 -227946647 + MIR SINE MIR 32 247 -15 1391 171 43 37 chr1 14717756 14717841 -227946512 + MER33 DNA MER1_type 1 84 -2501 2015 105 34 7 chr1 14717841 14718135 -227946218 + AluSx SINE Alu 1 302 -10 1391 171 43 37 chr1 14718135 14718371 -227945982 + MER33 DNA MER1_type 84 324 0 1007 204 22 0 chr1 14718485 14718666 -227945687 + MER5A DNA MER1_type 3 187 -2 22 0 0 0 chr1 14718760 14718782 -227945571 + AT_rich Low_complexity Low_complexity 1 22 0 361 295 77 60 chr1 14718906 14719257 -227945096 - L1MEd LINE L1 -4444 1938 1502 2294 66 3 0 chr1 14719257 14719546 -227944807 + AluSq SINE Alu 1 290 -23 361 295 77 60 chr1 14719546 14719789 -227944564 - L1MEd LINE L1 -4880 1502 1265 703 170 4 145 chr1 14719789 14719906 -227944447 + MER3 DNA MER1_type 2 71 -138 2123 115 0 0 chr1 14719906 14720201 -227944152 + AluSx SINE Alu 7 301 -11 703 170 4 145 chr1 14720201 14720318 -227944035 + MER3 DNA MER1_type 71 203 -6 622 231 128 88 chr1 14720322 14720790 -227943563 - L1MEd LINE L1 -5037 1335 849 357 242 60 103 chr1 14720910 14721162 -227943191 - L1MEd LINE L1 -5863 509 269 212 241 0 0 chr1 14721813 14721871 -227942482 + (CAGAGA)n Simple_repeat Simple_repeat 1 58 0 196 311 33 0 chr1 14722531 14722592 -227941761 + MER5A DNA MER1_type 9 71 -118 1747 119 12 0 chr1 14722592 14722844 -227941509 + AluSx SINE Alu 55 309 -3 21 71 0 0 chr1 14723011 14723053 -227941300 + AT_rich Low_complexity Low_complexity 1 42 0 284 323 113 57 chr1 14723449 14723936 -227940417 + L2 LINE L2 2542 3067 -205 237 33 0 0 chr1 14723936 14723966 -227940387 + (CA)n Simple_repeat Simple_repeat 2 31 0 284 323 113 57 chr1 14723966 14724137 -227940216 + L2 LINE L2 3067 3227 -45 601 202 120 66 chr1 14724142 14724325 -227940028 + MER63A DNA MER1_type 18 210 0 198 118 0 0 chr1 14724364 14724398 -227939955 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 560 186 53 0 chr1 14724527 14724640 -227939713 - MER20 DNA MER1_type 0 219 101 185 333 0 43 chr1 14727075 14727104 -227937249 + MIR SINE MIR 46 75 -133 2018 121 35 0 chr1 14727104 14727394 -227936959 - AluSx SINE Alu -11 301 2 185 333 0 43 chr1 14727394 14727457 -227936896 + MIR SINE MIR 75 134 -74 273 325 0 0 chr1 14727507 14727590 -227936763 + L2 LINE L2 3190 3272 0 220 211 58 0 chr1 14727593 14727645 -227936708 + L2 LINE L2 3201 3255 -17 472 301 137 0 chr1 14728364 14728583 -227935770 + MER102a DNA MER1_type 77 325 -5 229 238 0 32 chr1 14728839 14728902 -227935451 - MIR SINE MIR -118 144 84 356 306 175 1 chr1 14729008 14729172 -227935181 - MIR SINE MIR -62 146 7 489 250 38 25 chr1 14730076 14730236 -227934117 + MER103 DNA DNA 2 163 -3 336 275 154 7 chr1 14730277 14730426 -227933927 + MIR3 SINE MIR 23 193 -15 343 280 30 0 chr1 14730463 14730563 -227933790 + MIR SINE MIR 90 192 -70 586 318 30 0 chr1 14730620 14730821 -227933532 - MIR SINE MIR -40 222 16 216 330 44 22 chr1 14731399 14731490 -227932863 - MIR SINE MIR -67 141 49 253 321 0 28 chr1 14731779 14731885 -227932468 + MIR SINE MIR 22 124 -138 264 320 33 40 chr1 14732186 14732312 -227932041 - MER5A DNA MER1_type -43 146 1 961 266 34 0 chr1 14732724 14732961 -227931392 + MIR SINE MIR 6 250 -12 362 285 62 21 chr1 14733327 14733471 -227930882 - MIR SINE MIR -68 194 45 2190 121 0 9 chr1 14733973 14734288 -227930065 + AluSx SINE Alu 1 312 0 21 36 0 0 chr1 14734660 14734688 -227929665 + AT_rich Low_complexity Low_complexity 1 28 0 1092 110 0 0 chr1 14734688 14734842 -227929511 - AluJb SINE Alu -31 281 128 614 299 185 0 chr1 14735398 14735609 -227928744 + MIR SINE MIR 13 262 0 426 287 70 0 chr1 14735672 14735801 -227928552 - MER91C DNA MER1_type -2 138 1 922 88 0 22 chr1 14735872 14736008 -227928345 - AluY SINE Alu -4 307 175 469 251 30 18 chr1 14736199 14736366 -227927987 + MER117 DNA MER1_type 3 171 -26 228 239 30 15 chr1 14736401 14736468 -227927885 + MER5B DNA MER1_type 1 68 -110 27 62 0 0 chr1 14737377 14737425 -227926928 + AT_rich Low_complexity Low_complexity 1 48 0 202 88 0 88 chr1 14739367 14739424 -227924929 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 311 263 0 30 chr1 14739601 14739700 -227924653 + (CACG)n Simple_repeat Simple_repeat 4 99 0 2221 101 13 0 chr1 14740200 14740508 -227923845 + AluSx SINE Alu 1 312 0 297 260 21 21 chr1 14741151 14741247 -227923106 + MER5A DNA MER1_type 71 166 -23 1970 147 0 22 chr1 14743709 14744028 -227920325 + AluSq SINE Alu 2 313 0 443 325 141 50 chr1 14744145 14744422 -227919931 - L1M4 LINE L1 -1712 4434 4133 328 286 0 0 chr1 14745414 14745491 -227918862 - MIR3 SINE MIR -37 171 95 314 304 183 16 chr1 14745813 14746004 -227918349 + L2 LINE L2 2431 2653 -661 893 134 0 15 chr1 14746291 14746425 -227917928 + FLAM_C SINE Alu 1 132 -1 462 275 35 55 chr1 14746439 14746483 -227917870 + L2 LINE L2 3113 3156 -157 2021 131 0 10 chr1 14746483 14746789 -227917564 - AluSg SINE Alu -7 303 1 462 275 35 55 chr1 14746789 14746944 -227917409 + L2 LINE L2 3156 3308 -5 236 353 66 0 chr1 14747038 14747160 -227917193 - L2 LINE L2 -2 3311 3182 334 260 91 58 chr1 14747163 14747317 -227917036 + MIR SINE MIR 14 172 -90 250 305 48 29 chr1 14747780 14747885 -227916468 + MIR3 SINE MIR 81 187 -21 186 189 0 0 chr1 14748046 14748083 -227916270 + (ATG)n Simple_repeat Simple_repeat 3 39 0 369 227 85 156 chr1 14748084 14748363 -227915990 - MIR SINE MIR 0 262 7 789 259 43 47 chr1 14748818 14749119 -227915234 + MLT1K LTR MaLR 211 510 -78 447 267 14 27 chr1 14749600 14749746 -227914607 - MIR SINE MIR -88 174 31 341 319 35 9 chr1 14749813 14749929 -227914424 - MIR SINE MIR -107 155 37 2198 92 20 0 chr1 14750039 14750333 -227914020 - AluSx SINE Alu -12 300 1 1975 117 0 7 chr1 14750846 14751128 -227913225 - AluSx SINE Alu 0 312 33 615 271 8 0 chr1 14751474 14751607 -227912746 + MIR3 SINE MIR 72 205 -3 211 299 15 15 chr1 14751791 14751858 -227912495 - MIR SINE MIR -112 150 84 192 333 35 23 chr1 14751972 14752059 -227912294 + L2 LINE L2 3184 3271 -1 422 187 11 0 chr1 14752895 14752986 -227911367 + (CA)n Simple_repeat Simple_repeat 1 92 0 2857 90 0 6 chr1 14752997 14753362 -227910991 + THE1B LTR MaLR 1 363 -1 261 83 0 0 chr1 14753362 14753398 -227910955 + (CA)n Simple_repeat Simple_repeat 1 36 0 356 273 8 25 chr1 14753602 14753723 -227910630 + MIR SINE MIR 37 155 -107 453 252 26 33 chr1 14753790 14753941 -227910412 + MIR SINE MIR 31 180 -82 346 269 37 19 chr1 14755068 14755176 -227909177 - MIR SINE MIR -67 141 32 717 135 10 73 chr1 14755312 14755504 -227908849 + (CTACT)n Simple_repeat Simple_repeat 1 180 0 1959 98 22 4 chr1 14755511 14755786 -227908567 - AluSx SINE Alu -32 280 1 412 256 0 80 chr1 14755786 14755916 -227908437 - MIR SINE MIR -110 152 32 747 187 56 45 chr1 14755963 14756161 -227908192 + MER20 DNA MER1_type 3 202 -17 539 211 9 0 chr1 14756501 14756610 -227907743 + L1MB7 LINE L1 6006 6115 -69 255 61 0 0 chr1 14757082 14757115 -227907238 + (CA)n Simple_repeat Simple_repeat 2 34 0 1896 153 0 0 chr1 14757744 14758039 -227906314 - AluSx SINE Alu -17 295 1 2067 158 50 60 chr1 14758994 14759198 -227905155 + Tigger2a DNA MER2_type 1 205 -2503 2179 118 0 6 chr1 14759198 14759512 -227904841 - AluSx SINE Alu 0 312 1 2067 158 50 60 chr1 14759512 14759565 -227904788 + Tigger2a DNA MER2_type 205 257 -2451 1874 153 49 25 chr1 14759565 14759931 -227904422 + THE1C LTR MaLR 1 375 0 2067 158 50 60 chr1 14759931 14760109 -227904244 + Tigger2a DNA MER2_type 257 433 -1 390 301 9 0 chr1 14760118 14760231 -227904122 - MIR SINE MIR -112 150 37 193 293 104 0 chr1 14760405 14760511 -227903842 - MIR3 SINE MIR -83 125 9 279 312 65 12 chr1 14760588 14760758 -227903595 - L1ME4a LINE L1 0 6121 5943 1521 152 83 7 chr1 14760771 14761061 -227903292 - AluJb SINE Alu 0 312 1 2031 51 4 4 chr1 14761642 14761896 -227902457 + AluY SINE Alu 58 311 0 237 282 13 13 chr1 14761910 14761988 -227902365 + MIR SINE MIR 6 83 -179 320 338 44 19 chr1 14762071 14762231 -227902122 + MIR SINE MIR 89 252 -10 336 284 142 26 chr1 14762834 14763024 -227901329 + MIR SINE MIR 29 240 -22 320 283 19 0 chr1 14763027 14763133 -227901220 + L2 LINE L2 2999 3106 -207 197 149 106 21 chr1 14763188 14763235 -227901118 - L2 LINE L2 -79 3234 3184 581 218 75 0 chr1 14763535 14763682 -227900671 - MIR SINE MIR -40 222 65 2375 93 3 0 chr1 14763891 14764203 -227900150 + AluSp SINE Alu 1 313 0 2151 108 0 34 chr1 14764266 14764589 -227899764 + AluSx SINE Alu 1 312 0 2021 136 0 10 chr1 14764730 14765038 -227899315 - AluSx SINE Alu -1 311 7 392 317 31 50 chr1 14765341 14765502 -227898851 + MIR3 SINE MIR 45 202 -6 518 137 51 51 chr1 14765828 14765945 -227898408 + L1MA5A LINE L1 6181 6297 0 557 288 82 23 chr1 14766184 14766357 -227897996 + MIR SINE MIR 28 256 -3 184 256 23 0 chr1 14766357 14766400 -227897953 + L2 LINE L2 3258 3301 -12 184 208 21 62 chr1 14766683 14766731 -227897622 + L2 LINE L2 3216 3261 -11 182 194 28 0 chr1 14767072 14767108 -227897245 + L2 LINE L2 3265 3301 -12 1988 142 0 6 chr1 14767247 14767558 -227896795 - AluJb SINE Alu -3 309 1 201 74 0 0 chr1 14767916 14767943 -227896410 + (TAA)n Simple_repeat Simple_repeat 2 28 0 267 319 58 0 chr1 14768013 14768151 -227896202 - MIR SINE MIR -93 169 24 506 298 78 19 chr1 14768510 14768715 -227895638 + MIR SINE MIR 9 225 -37 356 166 61 0 chr1 14769127 14769290 -227895063 + (CAGGG)n Simple_repeat Simple_repeat 1 173 0 1541 141 36 0 chr1 14769714 14769962 -227894391 - AluSx SINE Alu -55 257 1 309 287 38 70 chr1 14770057 14770214 -227894139 + L2 LINE L2 2986 3137 -135 533 239 122 42 chr1 14770228 14770452 -227893901 - MIR SINE MIR -15 247 13 186 315 21 63 chr1 14770874 14771017 -227893336 - MIR3 SINE MIR -71 137 1 2522 207 36 15 chr1 14771255 14771488 -227892865 + L1MB8 LINE L1 5091 5317 -861 2006 118 0 4 chr1 14771488 14771768 -227892585 + AluSx SINE Alu 1 279 -33 189 0 0 0 chr1 14771769 14771790 -227892563 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2522 207 36 15 chr1 14771790 14772278 -227892075 + L1MB8 LINE L1 5316 5827 -351 1824 160 23 26 chr1 14772281 14772555 -227891798 + MER2 DNA MER2_type 3 277 -68 2217 111 0 0 chr1 14772555 14772861 -227891492 - AluSx SINE Alu -6 306 1 1824 160 23 26 chr1 14772861 14772929 -227891424 + MER2 DNA MER2_type 277 344 -1 1783 150 16 57 chr1 14772929 14773036 -227891317 + L1MB8 LINE L1 5827 5937 -241 2486 71 0 0 chr1 14773036 14773347 -227891006 + AluY SINE Alu 1 311 0 1783 150 16 57 chr1 14773347 14773606 -227890747 + L1MB8 LINE L1 5937 6178 0 1492 199 10 23 chr1 14773620 14773926 -227890427 + AluJb SINE Alu 1 302 -10 423 0 0 0 chr1 14773927 14773974 -227890379 + (CACAA)n Simple_repeat Simple_repeat 3 49 0 2045 115 23 0 chr1 14774967 14775272 -227889081 + AluSx SINE Alu 1 312 0 211 228 44 20 chr1 14775408 14775502 -227888851 - MIR SINE MIR -99 163 37 326 257 97 26 chr1 14776173 14776286 -227888067 - L2 LINE L2 -14 3299 3179 324 296 53 23 chr1 14776319 14776451 -227887902 + MLT1J LTR MaLR 42 177 -334 207 0 0 0 chr1 14777679 14777702 -227886651 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 315 267 86 0 chr1 14777989 14778094 -227886259 - MIR3 SINE MIR -21 187 74 191 304 98 20 chr1 14778107 14778148 -227886205 + MIR SINE MIR 30 66 -196 2493 42 3 0 chr1 14778148 14778457 -227885896 + AluY SINE Alu 1 310 -1 191 304 98 20 chr1 14778457 14778517 -227885836 + MIR SINE MIR 66 139 -123 1793 163 21 15 chr1 14778539 14778871 -227885482 + MER2 DNA MER2_type 9 342 -3 222 277 96 12 chr1 14779012 14779095 -227885258 + MIR3 SINE MIR 105 194 -14 672 71 0 0 chr1 14779601 14779685 -227884668 - AluS SINE Alu -226 86 3 264 283 22 11 chr1 14779726 14779818 -227884535 - MIR SINE MIR -96 112 20 242 197 106 0 chr1 14779966 14780032 -227884321 + MER117 DNA MER1_type 97 169 -28 569 241 0 49 chr1 14780315 14780477 -227883876 + L2 LINE L2 3158 3311 -2 1599 278 195 28 chr1 14780985 14782183 -227882170 + L2 LINE L2 1641 3061 -252 339 246 186 0 chr1 14782993 14783111 -227881242 + MIR SINE MIR 15 154 -108 1702 115 163 19 chr1 14783395 14783708 -227880645 + THE1B LTR MaLR 7 364 0 329 232 58 103 chr1 14784580 14784743 -227879610 + MIR SINE MIR 6 161 -64 1312 301 46 21 chr1 14784743 14785264 -227879089 + L1ME3A LINE L1 5637 6170 0 734 258 83 22 chr1 14785706 14785839 -227878514 - MIR SINE MIR -5 257 103 2108 125 0 6 chr1 14785839 14786152 -227878201 + AluSx SINE Alu 1 311 -1 734 258 83 22 chr1 14786152 14786247 -227878106 - MIR SINE MIR -159 103 15 270 344 17 14 chr1 14786477 14786619 -227877734 + MIR SINE MIR 30 170 -63 2310 78 0 0 chr1 14787712 14788006 -227876347 - AluSq SINE Alu -19 294 1 348 303 138 44 chr1 14788146 14788219 -227876134 - L2 LINE L2 -17 3296 3231 2093 119 0 0 chr1 14788219 14788512 -227875841 - AluSx SINE Alu -19 293 1 348 303 138 44 chr1 14788512 14788821 -227875532 - L2 LINE L2 -82 3231 2878 384 245 36 54 chr1 14788872 14788942 -227875411 - MLT1C LTR MaLR 0 467 419 2121 118 0 0 chr1 14788942 14789238 -227875115 + AluSq SINE Alu 1 296 -17 384 245 36 54 chr1 14789238 14789312 -227875041 - MLT1C LTR MaLR -48 419 345 211 125 0 62 chr1 14789386 14789434 -227874919 + (TTCTC)n Simple_repeat Simple_repeat 3 47 0 282 264 58 0 chr1 14789448 14789535 -227874818 - MLT1D LTR MaLR -366 139 48 227 323 53 30 chr1 14789611 14789744 -227874609 - L2 LINE L2 -618 2696 2561 2209 87 0 0 chr1 14790077 14790404 -227873949 + AluSc SINE Alu 1 309 0 464 266 65 12 chr1 14790445 14790614 -227873739 - MIR SINE MIR -18 244 67 237 273 173 0 chr1 14791202 14791312 -227873041 - MIR SINE MIR -63 145 17 781 269 16 97 chr1 14791603 14791753 -227872600 + L2 LINE L2 2924 3084 -229 2026 122 7 7 chr1 14791753 14792056 -227872297 - AluSx SINE Alu -9 303 1 781 269 16 97 chr1 14792056 14792328 -227872025 + L2 LINE L2 3084 3312 -1 1977 135 7 0 chr1 14792592 14792888 -227871465 - AluSx SINE Alu -14 298 1 219 321 115 52 chr1 14792993 14793245 -227871108 + L3b LINE CR1 1191 1458 -125 496 224 29 92 chr1 14793265 14793439 -227870914 + MIR SINE MIR 8 170 -92 218 361 41 8 chr1 14794273 14794395 -227869958 + MIR SINE MIR 49 174 -88 2352 217 73 59 chr1 14794576 14794838 -227869515 + L1MC5 LINE L1 6983 7240 -721 2314 59 7 7 chr1 14794838 14795141 -227869212 + AluY SINE Alu 1 303 -8 2352 217 73 59 chr1 14795141 14795809 -227868544 + L1MC5 LINE L1 7240 7926 -35 356 261 100 1 chr1 14797045 14797184 -227867169 - MIR SINE MIR -55 153 40 2576 45 0 3 chr1 14798444 14798753 -227865600 - AluY SINE Alu -3 308 1 643 212 244 5 chr1 14798753 14798970 -227865383 + L2 LINE L2 3045 3313 0 1775 159 3 20 chr1 14799723 14800024 -227864329 - AluSx SINE Alu -16 296 1 189 0 0 0 chr1 14800051 14800072 -227864281 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 483 234 57 35 chr1 14800638 14800779 -227863574 - MIR SINE MIR -69 193 50 670 290 16 5 chr1 14800930 14801123 -227863230 - MIR SINE MIR -29 233 39 402 252 114 0 chr1 14801222 14801353 -227863000 - MER104 DNA Tc2 -34 146 1 533 253 7 27 chr1 14802006 14802156 -227862197 - L1MA10 LINE L1 -2 6332 6186 360 280 59 81 chr1 14802383 14802493 -227861860 + MIR SINE MIR 47 158 -104 261 0 0 0 chr1 14802493 14802522 -227861831 + (TG)n Simple_repeat Simple_repeat 2 30 0 2177 117 0 0 chr1 14802525 14802834 -227861519 - AluSx SINE Alu -3 309 1 360 280 59 81 chr1 14802834 14802905 -227861448 + MIR SINE MIR 160 228 -34 526 299 7 0 chr1 14802939 14803076 -227861277 - MIR SINE MIR -122 140 3 2589 45 0 0 chr1 14803348 14803659 -227860694 + AluY SINE Alu 1 311 0 252 328 148 0 chr1 14803903 14804025 -227860328 - MIR SINE MIR -12 250 111 1823 123 30 43 chr1 14804046 14804346 -227860007 - AluSx SINE Alu -14 298 3 1902 154 3 0 chr1 14804408 14804706 -227859647 - AluJo SINE Alu -13 299 1 187 336 133 8 chr1 14804828 14804956 -227859397 - MIR SINE MIR -17 245 102 2500 173 34 39 chr1 14805080 14805588 -227858765 - MLT1D LTR MaLR 0 505 1 334 306 78 6 chr1 14806141 14806311 -227858042 - MIR3 SINE MIR -75 133 7 988 177 0 0 chr1 14806338 14806502 -227857851 - AluJo SINE Alu -26 286 123 539 241 95 78 chr1 14806558 14806678 -227857675 + MIR SINE MIR 9 125 -137 2217 101 0 3 chr1 14806678 14806986 -227857367 + AluSx SINE Alu 1 307 -5 539 241 95 78 chr1 14806986 14807097 -227857256 + MIR SINE MIR 125 244 -18 434 191 24 0 chr1 14807609 14807693 -227856660 - MIR SINE MIR -119 143 58 421 289 104 55 chr1 14807866 14807988 -227856365 - L2 LINE L2 -19 3294 3180 2227 96 3 0 chr1 14807988 14808345 -227856008 + AluSp SINE Alu 1 313 0 421 289 104 55 chr1 14808345 14808662 -227855691 - L2 LINE L2 -133 3180 2833 305 320 50 50 chr1 14809044 14809225 -227855128 - L2 LINE L2 -17 3255 3075 401 326 48 0 chr1 14809537 14809684 -227854669 - Charlie8 DNA MER1_type -2227 190 37 1853 89 0 4 chr1 14809885 14810133 -227854220 - AluSx SINE Alu -11 301 55 382 347 28 0 chr1 14810682 14810826 -227853527 - MIR SINE MIR -71 191 44 2169 92 0 3 chr1 14812044 14812339 -227852014 - AluSp SINE Alu -16 297 4 1018 176 66 35 chr1 14812804 14813031 -227851322 - MER106A DNA MER1_type 0 236 3 1010 208 29 41 chr1 14813070 14813315 -227851038 - MIR SINE MIR -18 244 3 348 262 223 19 chr1 14813641 14813847 -227850506 - L1ME LINE L1 -315 5806 5559 212 281 49 24 chr1 14814418 14814500 -227849853 + (CATG)n Simple_repeat Simple_repeat 1 84 0 327 277 0 12 chr1 14814777 14814860 -227849493 + L2 LINE L2 3231 3312 -1 1906 108 0 42 chr1 14815459 14815747 -227848606 - AluSc SINE Alu -19 290 15 207 147 0 0 chr1 14815751 14815785 -227848568 - L2 LINE L2 -14 3258 3225 615 71 0 115 chr1 14817288 14817355 -227846998 + L1PB2 LINE L1 5772 5824 -327 2173 105 0 16 chr1 14817355 14817668 -227846685 + AluSx SINE Alu 1 308 -4 615 71 0 115 chr1 14817668 14817720 -227846633 + L1PB2 LINE L1 5824 5880 -271 271 299 234 19 chr1 14817912 14818237 -227846116 + L1MC/D LINE L1 5255 5649 -2159 999 145 16 21 chr1 14818395 14818588 -227845765 + L1M1 LINE L1 5508 5699 -603 520 174 0 0 chr1 14818591 14818677 -227845676 + MER66A LTR ERV1 154 239 -239 332 174 122 71 chr1 14818753 14818781 -227845572 - L1ME4a LINE L1 -4 6117 6092 1795 201 116 37 chr1 14818781 14819263 -227845090 - MLT2B1 LTR ERVL 0 520 1 332 174 122 71 chr1 14819263 14819332 -227845021 - L1ME4a LINE L1 -29 6092 6015 1548 186 65 90 chr1 14819885 14820426 -227843927 + MER66A LTR ERV1 95 473 -5 298 312 18 9 chr1 14820437 14820546 -227843807 + MIR SINE MIR 153 262 0 525 300 121 5 chr1 14821889 14822112 -227842241 - MIR SINE MIR 0 262 14 1578 220 122 28 chr1 14823070 14823529 -227840824 + MLT1D LTR MaLR 4 505 0 272 173 39 0 chr1 14823962 14824014 -227840339 + GA-rich Low_complexity Low_complexity 2 55 0 663 118 13 39 chr1 14824024 14824177 -227840176 + (GGGAA)n Simple_repeat Simple_repeat 4 152 0 300 224 0 0 chr1 14824436 14824523 -227839830 + AluSq/x SINE Alu 66 135 -168 240 62 0 62 chr1 14824523 14824571 -227839782 - L1MB4 LINE L1 -9 6171 6127 2077 127 10 0 chr1 14824571 14824878 -227839475 + AluSx SINE Alu 1 310 -2 1748 194 120 46 chr1 14826038 14826139 -227838214 - MLT1C LTR MaLR -2 465 373 2099 92 10 7 chr1 14826139 14826444 -227837909 - AluSx SINE Alu -6 306 1 1748 194 120 46 chr1 14826444 14826775 -227837578 - MLT1C LTR MaLR -94 373 1 857 182 62 84 chr1 14826823 14826991 -227837362 - MER58A DNA MER1_type -2199 221 56 1816 145 0 3 chr1 14826991 14827306 -227837047 + AluJb SINE Alu 1 314 0 857 182 62 84 chr1 14827306 14827360 -227836993 - MER58A DNA MER1_type -2364 56 2 408 261 72 0 chr1 14827425 14827536 -227836817 + MIR SINE MIR 74 192 -70 586 326 77 0 chr1 14827739 14827935 -227836418 - MIR SINE MIR -4 258 48 2117 113 3 3 chr1 14828019 14828321 -227836032 - AluSx SINE Alu -10 302 1 491 278 178 35 chr1 14829611 14830006 -227834347 + L2 LINE L2 2576 2913 -400 2282 81 0 3 chr1 14830006 14830302 -227834051 - AluSg SINE Alu -15 295 1 491 278 178 35 chr1 14830302 14830558 -227833795 + L2 LINE L2 2913 3307 -6 284 290 8 105 chr1 14831287 14831482 -227832871 - L1MC4 LINE L1 -277 7765 7597 2284 100 0 3 chr1 14831482 14831792 -227832561 - AluSg SINE Alu 0 310 2 284 290 8 105 chr1 14831792 14831844 -227832509 - L1MC4 LINE L1 -445 7597 7542 304 183 127 0 chr1 14831866 14831937 -227832416 - L1MC4a LINE L1 -451 7357 7300 1508 167 7 7 chr1 14831958 14832228 -227832125 - AluJo SINE Alu -3 309 40 354 139 17 46 chr1 14832229 14832309 -227832044 - AluJ/FLAM SINE Alu -243 59 1 2197 80 0 0 chr1 14832363 14832639 -227831714 - AluSg SINE Alu -14 296 21 1159 271 94 38 chr1 14832656 14833118 -227831235 - L1MC4a LINE L1 -867 6941 6439 1729 125 35 64 chr1 14833118 14833430 -227830923 - AluSx SINE Alu -9 303 1 1159 271 94 38 chr1 14833430 14833540 -227830813 - L1MC4a LINE L1 -1369 6439 6337 206 32 32 0 chr1 14833540 14833571 -227830782 + (TTTAA)n Simple_repeat Simple_repeat 3 34 0 2152 102 0 0 chr1 14833571 14833855 -227830498 - AluSq SINE Alu -29 284 1 889 261 131 4 chr1 14833879 14834156 -227830197 - L1MC4a LINE L1 -698 5472 5406 2096 121 10 0 chr1 14834790 14835097 -227829256 + AluSg SINE Alu 1 310 0 547 318 19 5 chr1 14835256 14835467 -227828886 + MIR SINE MIR 5 218 -44 594 322 16 11 chr1 14835768 14835951 -227828402 + MER91A DNA MER1_type 1 184 -12 267 299 45 0 chr1 14836057 14836124 -227828229 + MER91A DNA MER1_type 127 196 0 413 275 203 6 chr1 14837315 14837326 -227827027 - MIR SINE MIR -19 243 235 2146 124 0 9 chr1 14837326 14837641 -227826712 + AluSx SINE Alu 1 312 0 413 275 203 6 chr1 14837641 14837811 -227826542 - MIR SINE MIR -27 235 26 1293 125 0 0 chr1 14838080 14838272 -227826081 - AluSg/x SINE Alu -4 308 117 501 75 15 0 chr1 14838372 14838439 -227825914 - AluSg1 SINE Alu -217 92 25 1745 98 4 0 chr1 14838441 14838676 -227825677 + AluSx SINE Alu 53 288 -24 1291 80 6 0 chr1 14839534 14839710 -227824643 + AluSp SINE Alu 135 311 -2 207 0 0 0 chr1 14840507 14840530 -227823823 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2140 80 0 11 chr1 14840534 14840820 -227823533 - AluSg SINE Alu -27 283 1 829 189 0 7 chr1 14841282 14841435 -227822918 + AluJb SINE Alu 160 311 -1 2418 70 0 3 chr1 14841530 14841842 -227822511 - AluY SINE Alu 0 311 1 270 219 145 0 chr1 14841876 14841945 -227822408 + MIR SINE MIR 106 183 -63 35 71 0 0 chr1 14841994 14842064 -227822289 + AT_rich Low_complexity Low_complexity 1 70 0 505 256 8 0 chr1 14842635 14842653 -227821700 - L1MA10 LINE L1 -7 6327 6310 1375 254 88 8 chr1 14842653 14842838 -227821515 - L1ME2 LINE L1 -18 6146 5962 344 322 102 23 chr1 14842838 14843180 -227821173 - L1PB4 LINE L1 -213 5943 5575 1650 226 88 11 chr1 14843252 14843744 -227820609 + MLT1H1 LTR MaLR 3 551 -4 455 276 0 31 chr1 14843753 14843797 -227820556 + L2 LINE L2 3191 3235 -78 3975 57 36 0 chr1 14843797 14844292 -227820061 + LTR10D LTR ERV1 1 513 0 455 276 0 31 chr1 14844292 14844374 -227819979 + L2 LINE L2 3235 3313 0 313 329 36 7 chr1 14844506 14844646 -227819707 + MIR SINE MIR 110 253 -9 2215 101 3 0 chr1 14844777 14845075 -227819278 + AluSq SINE Alu 1 299 -14 920 58 0 0 chr1 14845802 14845922 -227818431 + AluY SINE Alu 192 311 0 225 245 19 0 chr1 14845983 14846036 -227818317 + CT-rich Low_complexity Low_complexity 5 58 0 353 346 21 42 chr1 14846089 14846170 -227818183 + MIR SINE MIR 20 101 -161 2084 121 7 7 chr1 14846170 14846477 -227817876 - AluSg SINE Alu -3 307 1 353 346 21 42 chr1 14846477 14846635 -227817718 + MIR SINE MIR 101 254 -8 253 132 0 0 chr1 14847267 14847305 -227817048 + MLT1I LTR MaLR 98 135 -274 371 187 91 20 chr1 14847349 14847470 -227816883 + L1MC3 LINE L1 6255 6344 0 2108 104 0 0 chr1 14847479 14847759 -227816594 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr1 14847768 14847792 -227816561 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1610 173 65 127 chr1 14849078 14849130 -227815223 - MLT1D LTR MaLR -4 501 447 3898 81 7 37 chr1 14849130 14849671 -227814682 + MER1A DNA MER1_type 3 527 0 1610 173 65 127 chr1 14849671 14850145 -227814208 - MLT1D LTR MaLR -58 447 8 2021 112 10 7 chr1 14850624 14850919 -227813434 + AluSx SINE Alu 1 296 -16 1937 179 67 77 chr1 14850919 14851317 -227813036 + Charlie1 DNA MER1_type 2154 2545 -216 2128 116 7 0 chr1 14851317 14851620 -227812733 + AluSx SINE Alu 5 309 -3 1937 179 67 77 chr1 14851620 14851835 -227812518 + Charlie1 DNA MER1_type 2545 2761 0 715 189 0 57 chr1 14851919 14852094 -227812259 + L1ME4a LINE L1 5721 5885 -236 1710 155 45 7 chr1 14852273 14852564 -227811789 + AluJb SINE Alu 1 302 -10 232 200 256 11 chr1 14853245 14853335 -227811018 - MIR SINE MIR -27 235 124 4372 76 21 2 chr1 14853397 14853966 -227810387 + L1PA8 LINE L1 5591 6170 -2 269 203 76 38 chr1 14853991 14854070 -227810283 - MIR SINE MIR -168 94 13 399 243 144 35 chr1 14854167 14854340 -227810013 + MIR SINE MIR 57 248 -14 192 250 174 22 chr1 14854557 14854649 -227809704 - MIR SINE MIR -55 207 102 433 262 99 0 chr1 14855479 14855620 -227808733 + MLT1J LTR MaLR 8 162 -349 341 260 63 47 chr1 14855667 14855794 -227808559 + MLT1J2 LTR MaLR 320 448 -2 699 262 36 27 chr1 14857215 14857440 -227806913 - MIR SINE MIR -28 234 8 321 318 71 9 chr1 14858148 14858359 -227805994 + L2 LINE L2 2844 3067 -246 408 287 120 12 chr1 14858487 14858654 -227805699 + L2 LINE L2 3094 3278 -35 223 174 22 0 chr1 14858736 14858782 -227805571 + C-rich Low_complexity Low_complexity 3 49 0 222 290 103 0 chr1 14859828 14859973 -227804380 + L2 LINE L2 2888 3047 -266 250 284 11 57 chr1 14860114 14860202 -227804151 + L2 LINE L2 3182 3265 -7 2285 86 0 19 chr1 14860956 14861269 -227803084 - AluSq SINE Alu 0 313 7 211 302 35 35 chr1 14861375 14861461 -227802892 + MIR SINE MIR 41 126 -82 514 159 175 0 chr1 14861546 14861672 -227802681 + MER53 DNA DNA 32 179 -10 240 256 238 17 chr1 14862146 14862335 -227802018 + MIR3 SINE MIR 15 241 -21 238 325 0 0 chr1 14862409 14862492 -227801861 + MIR SINE MIR 39 121 -87 236 304 0 0 chr1 14862559 14862628 -227801725 + MER3 DNA MER1_type 20 88 -121 * 538 262 82 16 chr1 14862587 14862628 -227801725 - MER3 DNA MER1_type 0 209 172 2082 103 14 0 chr1 14862628 14862918 -227801435 - AluY SINE Alu -17 294 1 538 262 82 16 chr1 14862918 14863059 -227801294 - MER3 DNA MER1_type -37 172 15 453 292 56 31 chr1 14863635 14863830 -227800523 + MLT1J LTR MaLR 99 298 -213 25 31 0 0 chr1 14863920 14863952 -227800401 + AT_rich Low_complexity Low_complexity 1 32 0 894 288 29 16 chr1 14863968 14864211 -227800142 - MIR SINE MIR -10 252 7 190 333 56 0 chr1 14864437 14864527 -227799826 + L2 LINE L2 3155 3249 -23 313 306 160 7 chr1 14864551 14864695 -227799658 + MIR SINE MIR 32 197 -65 349 114 38 76 chr1 14865017 14865096 -227799257 + L1ME2 LINE L1 6089 6164 0 333 0 0 0 chr1 14865315 14865352 -227799001 + (CA)n Simple_repeat Simple_repeat 2 38 0 1939 137 3 13 chr1 14865820 14866098 -227798255 + AluSx SINE Alu 5 293 -19 217 97 0 0 chr1 14866098 14866129 -227798224 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1939 137 3 13 chr1 14866129 14866149 -227798204 + AluSx SINE Alu 293 312 0 270 269 154 46 chr1 14866470 14866600 -227797753 - MIR SINE MIR -10 252 109 1902 128 14 0 chr1 14868402 14868718 -227795635 - AluSx SINE Alu 0 320 1 656 250 93 39 chr1 14868942 14869437 -227794916 + MLT1K LTR MaLR 3 580 -8 659 267 119 14 chr1 14869788 14869998 -227794355 - MIR SINE MIR -18 244 13 1792 83 0 8 chr1 14871029 14871269 -227793084 + AluY SINE Alu 74 311 0 227 242 16 0 chr1 14871381 14871443 -227792910 + MIR SINE MIR 94 156 -106 * 505 329 99 0 chr1 14871435 14871657 -227792696 + MIR SINE MIR 11 254 -8 279 284 96 8 chr1 14872445 14872569 -227791784 - MIR SINE MIR -32 176 39 2378 75 0 7 chr1 14873496 14873803 -227790550 - AluSx SINE Alu -7 305 1 603 216 174 12 chr1 14873894 14874061 -227790292 + MIR SINE MIR 69 262 0 21 0 0 0 chr1 14874501 14874522 -227789831 + AT_rich Low_complexity Low_complexity 1 21 0 497 16 16 0 chr1 14874541 14874603 -227789750 + (CA)n Simple_repeat Simple_repeat 2 64 0 2163 89 3 25 chr1 14876377 14876693 -227787660 + AluSx SINE Alu 4 312 0 560 348 36 16 chr1 14877094 14877341 -227787012 + L3 LINE CR1 1210 1461 -116 1768 130 7 20 chr1 14878020 14878319 -227786034 + AluJo SINE Alu 1 295 -17 2085 129 3 0 chr1 14878321 14878631 -227785722 + AluSx SINE Alu 1 311 -1 353 218 39 13 chr1 14878732 14878810 -227785543 - MIR SINE MIR -93 169 90 2288 90 0 0 chr1 14879033 14879333 -227785020 - AluSq SINE Alu -13 300 1 488 212 131 7 chr1 14879357 14879494 -227784859 - MIR SINE MIR -75 187 34 216 286 255 0 chr1 14880857 14880955 -227783398 + L2 LINE L2 3185 3307 -6 543 254 0 0 chr1 14881094 14881204 -227783149 + MER81 DNA DNA 5 114 0 260 297 79 10 chr1 14881362 14881463 -227782890 - MIR SINE MIR -98 164 57 187 98 0 49 chr1 14881887 14881928 -227782425 + (GGGAGA)n Simple_repeat Simple_repeat 6 44 0 841 178 50 22 chr1 14881968 14882148 -227782205 - MER5A DNA MER1_type 0 189 5 717 129 0 0 chr1 14882236 14882362 -227781991 + AluSp/q SINE Alu 185 310 0 375 308 123 0 chr1 14882861 14882991 -227781362 - L3 LINE CR1 -90 1487 1342 2372 75 3 0 chr1 14883088 14883393 -227780960 + AluSg1 SINE Alu 1 306 -3 2424 51 0 25 chr1 14883438 14883752 -227780601 + AluY SINE Alu 1 306 -5 1059 195 0 0 chr1 14883786 14883960 -227780393 + FAM SINE Alu 1 174 -1 2093 120 0 3 chr1 14884200 14884501 -227779852 + AluSq SINE Alu 1 300 -13 1536 192 18 0 chr1 14884516 14884792 -227779561 + L1MB4 LINE L1 5900 6180 0 386 195 172 0 chr1 14885009 14885096 -227779257 - MER3 DNA MER1_type -8 201 100 331 238 0 25 chr1 14885755 14885835 -227778518 + FAM SINE Alu 73 150 -25 201 274 82 14 chr1 14885900 14885973 -227778380 + MER5A DNA MER1_type 1 78 -111 1852 142 0 39 chr1 14886127 14886438 -227777915 - AluSx SINE Alu -13 299 1 218 221 38 114 chr1 14886449 14886607 -227777746 + MIR3 SINE MIR 54 199 -9 240 318 139 8 chr1 14886939 14887068 -227777285 + MIR SINE MIR 105 250 -12 21 57 0 0 chr1 14888322 14888357 -227775996 + AT_rich Low_complexity Low_complexity 1 35 0 574 259 36 24 chr1 14888482 14888648 -227775705 - MIR SINE MIR -85 177 10 2488 46 3 0 chr1 14889120 14889424 -227774929 - AluY SINE Alu -6 305 1 454 290 22 0 chr1 14889482 14889620 -227774733 + MIR SINE MIR 43 183 -79 727 269 57 46 chr1 14890046 14890328 -227774025 + L2 LINE L2 3028 3312 -1 348 311 102 12 chr1 14891510 14891677 -227772676 - MIR SINE MIR -2 260 79 383 308 128 0 chr1 14891996 14892168 -227772185 + MIR SINE MIR 56 249 -13 21 0 0 0 chr1 14892948 14892969 -227771384 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 14892991 14893011 -227771342 + (CCCCG)n Simple_repeat Simple_repeat 2 21 0 477 260 0 0 chr1 14893174 14893449 -227770904 + G-rich Low_complexity Low_complexity 1 275 0 23 0 0 0 chr1 14893554 14893577 -227770776 + GC_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr1 14893742 14893781 -227770572 + GC_rich Low_complexity Low_complexity 1 39 0 194 0 39 0 chr1 14893926 14893952 -227770401 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 2101 74 0 0 chr1 14895185 14895454 -227768899 - AluSg SINE Alu -8 302 34 692 275 100 63 chr1 14895788 14895987 -227768366 - Charlie8 DNA MER1_type -1867 550 360 1961 151 0 0 chr1 14895987 14896299 -227768054 + AluSx SINE Alu 1 312 0 692 275 100 63 chr1 14896299 14896561 -227767792 - Charlie8 DNA MER1_type -2057 360 72 405 39 0 0 chr1 14896802 14896853 -227767500 + (TG)n Simple_repeat Simple_repeat 2 52 0 803 172 172 0 chr1 14897233 14897384 -227766969 + MER45A DNA AcHobo 1 177 -1 198 71 0 0 chr1 14897710 14897738 -227766615 + (A)n Simple_repeat Simple_repeat 1 28 0 1552 143 62 65 chr1 14897971 14898307 -227766046 - MER7A DNA MER2_type -1 345 13 2217 84 7 0 chr1 14898535 14898831 -227765522 + AluSx SINE Alu 5 302 -10 1381 233 64 77 chr1 14899007 14899258 -227765095 - MLT1F1 LTR MaLR -8 559 306 234 0 0 0 chr1 14899258 14899284 -227765069 + (TA)n Simple_repeat Simple_repeat 2 27 0 2192 113 0 0 chr1 14899284 14899586 -227764767 - AluSx SINE Alu -5 307 6 1381 233 64 77 chr1 14899586 14899800 -227764553 - MLT1F1 LTR MaLR -259 308 99 2319 97 0 3 chr1 14899808 14900118 -227764235 + AluSc SINE Alu 1 309 0 276 30 0 0 chr1 14900118 14900151 -227764202 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 315 222 42 0 chr1 14900153 14900253 -227764100 - MLT1F LTR MaLR -460 82 4 402 319 84 31 chr1 14900254 14900480 -227763873 + MIR SINE MIR 13 250 -12 1601 181 7 7 chr1 14901070 14901357 -227762996 - AluJo SINE Alu -17 295 9 2131 111 6 25 chr1 14901518 14901834 -227762519 + AluSx SINE Alu 1 310 -2 1171 179 36 20 chr1 14901859 14902110 -227762243 - MIR SINE MIR 0 262 8 272 298 224 12 chr1 14902127 14902288 -227762065 - MIR SINE MIR -12 250 56 2429 59 13 0 chr1 14902785 14903090 -227761263 - AluSp SINE Alu -4 309 1 729 225 0 94 chr1 14903092 14903305 -227761048 - MIR SINE MIR -64 198 6 750 201 38 11 chr1 14903748 14903932 -227760421 + MER5A DNA MER1_type 1 189 0 273 273 117 31 chr1 14905017 14905145 -227759208 - MIR SINE MIR -23 239 101 336 290 28 48 chr1 14905149 14905294 -227759059 + Charlie8 DNA MER1_type 7 148 -2269 1387 129 0 0 chr1 14905318 14905512 -227758841 + AluJb SINE Alu 1 194 -118 360 294 83 50 chr1 14905733 14905821 -227758532 + MIR3 SINE MIR 5 89 -119 2047 122 26 0 chr1 14905821 14906125 -227758228 - AluSx SINE Alu 0 312 1 360 294 83 50 chr1 14906125 14906216 -227758137 + MIR3 SINE MIR 89 190 -18 402 258 43 45 chr1 14906675 14906820 -227757533 - MIR3 SINE MIR -65 143 15 733 296 30 9 chr1 14907030 14907260 -227757093 + Charlie8 DNA MER1_type 2 236 -2181 797 130 198 57 chr1 14907401 14907593 -227756760 + MER20 DNA MER1_type 1 219 0 449 34 17 0 chr1 14907902 14907961 -227756392 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 1572 143 21 38 chr1 14907961 14908248 -227756105 - AluSx SINE Alu -30 282 1 330 217 22 43 chr1 14908698 14908790 -227755563 + MIR SINE MIR 78 167 -95 * 376 242 91 95 chr1 14908775 14909006 -227755347 - MIR SINE MIR 0 262 33 1697 107 119 8 chr1 14909015 14909276 -227755077 - AluSg1 SINE Alu -17 292 3 1532 148 21 41 chr1 14909285 14909437 -227754916 - AluJo SINE Alu -22 290 145 2005 139 7 3 chr1 14909437 14909747 -227754606 - AluSx SINE Alu -1 311 1 1532 148 21 41 chr1 14909747 14909885 -227754468 - AluJo SINE Alu -167 145 6 194 316 63 47 chr1 14910221 14910411 -227753942 + L2 LINE L2 2891 3083 -189 307 221 221 0 chr1 14910488 14910583 -227753770 - MER5A DNA MER1_type -7 182 61 2071 119 0 19 chr1 14910583 14910893 -227753460 - AluJb SINE Alu -8 304 1 282 197 30 0 chr1 14910928 14910994 -227753359 - MER5A DNA MER1_type -117 72 5 324 0 0 0 chr1 14911787 14911823 -227752530 + (TTA)n Simple_repeat Simple_repeat 3 38 0 2104 105 0 0 chr1 14911826 14912111 -227752242 - AluSc SINE Alu -24 285 1 2036 92 7 0 chr1 14912118 14912428 -227751925 - AluY SINE Alu 0 312 1 1768 133 10 30 chr1 14912632 14912934 -227751419 + AluSx SINE Alu 3 298 -14 2311 97 0 0 chr1 14912934 14913245 -227751108 + AluY SINE Alu 1 311 0 250 211 35 18 chr1 14913567 14913624 -227750729 - L2 LINE L2 -7 3306 3249 792 103 8 0 chr1 14913665 14913782 -227750571 - AluSg/x SINE Alu -3 307 190 279 310 9 35 chr1 14913786 14913902 -227750451 - MIR SINE MIR -118 144 32 435 281 100 6 chr1 14914040 14914200 -227750153 + MIR SINE MIR 77 251 -11 2224 114 0 3 chr1 14914828 14915136 -227749217 + AluSq SINE Alu 1 307 -6 2554 53 0 10 chr1 14915470 14915770 -227748583 + AluY SINE Alu 1 297 -14 1116 300 98 18 chr1 14916304 14917046 -227747307 + L2 LINE L2 2495 3313 0 2491 70 0 3 chr1 14917230 14917528 -227746825 - AluY SINE Alu -14 297 1 321 272 87 0 chr1 14917534 14917626 -227746727 - MIR SINE MIR -51 211 112 260 282 0 12 chr1 14918258 14918343 -227746010 + G-rich Low_complexity Low_complexity 2 85 0 313 350 8 17 chr1 14918883 14919000 -227745353 - MIR SINE MIR -59 149 34 272 210 32 0 chr1 14919155 14919217 -227745136 - L2 LINE L2 -3 3269 3206 263 341 11 0 chr1 14919915 14920006 -227744347 - MIR SINE MIR -27 235 144 1926 180 19 15 chr1 14920191 14920603 -227743750 + Charlie1 DNA MER1_type 2348 2761 0 383 125 0 0 chr1 14920603 14920657 -227743696 + MLT1L LTR MaLR 148 201 -414 369 267 20 13 chr1 14920658 14920784 -227743569 + MLT1K LTR MaLR 150 276 -339 446 187 168 0 chr1 14921037 14921144 -227743209 - MIR SINE MIR -55 153 35 428 274 55 43 chr1 14921441 14921605 -227742748 - LTR67 LTR ERVL -1 556 391 2400 92 0 0 chr1 14921646 14921940 -227742413 + AluSc SINE Alu 1 294 -15 413 357 18 6 chr1 14921953 14922121 -227742232 + L2 LINE L2 2936 3105 -208 230 191 0 0 chr1 14922978 14923025 -227741328 + ORSL DNA AcHobo 229 275 0 249 108 0 0 chr1 14923214 14923251 -227741102 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 201 321 131 0 chr1 14923251 14923335 -227741018 - L2 LINE L2 -28 3285 3191 251 206 44 0 chr1 14923364 14923432 -227740921 - L2 LINE L2 -200 3072 3002 436 281 20 77 chr1 14923469 14923665 -227740688 - MIR SINE MIR -31 231 47 2228 123 0 0 chr1 14924587 14924887 -227739466 - AluSg SINE Alu -4 306 7 369 227 33 93 chr1 14924911 14925061 -227739292 + L2 LINE L2 3173 3313 0 236 212 15 0 chr1 14925544 14925610 -227738743 + GA-rich Low_complexity Low_complexity 2 68 0 356 221 88 29 chr1 14926127 14926263 -227738090 - L1ME4a LINE L1 -1 6120 5977 180 247 14 123 chr1 14926393 14926466 -227737887 - MER5A DNA MER1_type 0 189 125 2532 75 6 0 chr1 14926466 14926815 -227737538 + L1PB1 LINE L1 5800 6150 -1 2564 53 7 3 chr1 14926836 14927139 -227737214 + AluY SINE Alu 2 305 -6 809 168 0 0 chr1 14927151 14927282 -227737071 + FLAM_C SINE Alu 1 131 -2 227 317 59 20 chr1 14927282 14927383 -227736970 + MER5A DNA MER1_type 66 170 -19 846 163 363 0 chr1 14928084 14928324 -227736029 - MER58B DNA MER1_type -8 333 7 187 258 48 16 chr1 14928365 14928427 -227735926 + L3 LINE CR1 1372 1435 -142 338 156 0 31 chr1 14928465 14928529 -227735824 - LTR16C LTR ERVL 0 491 430 323 311 99 0 chr1 14928529 14928680 -227735673 - L1MC3 LINE L1 -1907 5878 5713 1198 268 72 18 chr1 14928692 14928848 -227735505 + MLT1I LTR MaLR 1 147 -262 1468 110 50 0 chr1 14928848 14929067 -227735286 - MER30 DNA MER1_type 0 230 1 1198 268 72 18 chr1 14929067 14929298 -227735055 + MLT1I LTR MaLR 147 409 0 259 205 9 125 chr1 14930849 14930961 -227733392 - MIR SINE MIR -7 255 157 413 241 56 9 chr1 14930978 14931086 -227733267 - L2 LINE L2 0 3313 3201 2339 100 3 0 chr1 14931171 14931470 -227732883 - AluSp SINE Alu -13 300 1 186 71 0 0 chr1 14931487 14931515 -227732838 + (TC)n Simple_repeat Simple_repeat 1 28 0 312 27 0 0 chr1 14931515 14931552 -227732801 + (TG)n Simple_repeat Simple_repeat 2 38 0 1680 198 0 3 chr1 14931555 14931838 -227732515 - AluJo SINE Alu -30 282 1 834 197 26 79 chr1 14931857 14932085 -227732268 + MER20 DNA MER1_type 1 216 -3 889 129 0 0 chr1 14932329 14932461 -227731892 + FLAM_C SINE Alu 1 132 -1 242 341 37 19 chr1 14932525 14932739 -227731614 - L2 LINE L2 -213 3059 2842 614 209 129 25 chr1 14933199 14933362 -227730991 + MER5A DNA MER1_type 10 189 0 2414 72 0 0 chr1 14933574 14933865 -227730488 - AluSc SINE Alu -18 291 1 388 298 23 8 chr1 14933875 14934006 -227730347 + MIR SINE MIR 72 204 -58 2322 81 3 3 chr1 14934550 14934984 -227729369 - AluSp SINE Alu 0 434 1 744 302 21 8 chr1 14935010 14935245 -227729108 + MIR SINE MIR 13 250 -12 322 241 12 0 chr1 14935541 14935624 -227728729 - MIR SINE MIR -116 146 63 467 194 10 10 chr1 14935863 14935966 -227728387 + MER5A DNA MER1_type 4 106 -83 347 305 35 74 chr1 14936137 14936340 -227728013 - MIR SINE MIR -58 204 10 446 292 15 8 chr1 14936352 14936482 -227727871 + L2 LINE L2 3178 3308 -5 1332 221 102 68 chr1 14937108 14937578 -227726775 + MLT1G LTR MaLR 85 570 -20 465 373 35 0 chr1 14937591 14937792 -227726561 + MIR SINE MIR 21 228 -34 323 364 62 10 chr1 14937985 14938180 -227726173 + MIR SINE MIR 56 260 -2 419 311 17 71 chr1 14938643 14938881 -227725472 - MIR SINE MIR -10 252 28 292 195 146 12 chr1 14939439 14939521 -227724832 - MIR3 SINE MIR -45 163 71 833 138 88 88 chr1 14939531 14939748 -227724605 + MER20 DNA MER1_type 3 219 0 341 287 7 68 chr1 14939832 14939994 -227724359 - MIR3 SINE MIR -66 142 2 747 255 20 51 chr1 14940176 14940431 -227723922 - MIR SINE MIR -1 261 15 528 244 96 117 chr1 14940468 14940895 -227723458 + MLT1K LTR MaLR 59 476 -112 339 214 24 125 chr1 14940904 14941072 -227723281 + MLT1K LTR MaLR 438 588 0 679 239 37 60 chr1 14941213 14941481 -227722872 - MIR SINE MIR 0 262 1 523 238 104 36 chr1 14942198 14942391 -227721962 + MER63A DNA MER1_type 1 206 -4 255 61 0 0 chr1 14942484 14942517 -227721836 + (T)n Simple_repeat Simple_repeat 1 33 0 2471 89 3 0 chr1 14942645 14942948 -227721405 - AluSp SINE Alu -9 304 1 208 158 26 0 chr1 14943137 14943175 -227721178 + CT-rich Low_complexity Low_complexity 2 40 0 534 31 0 0 chr1 14943463 14943527 -227720826 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 2754 246 137 23 chr1 14943553 14944810 -227719543 + L2 LINE L2 1862 3313 0 1134 117 0 0 chr1 14944818 14944997 -227719356 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 960 161 0 0 chr1 14945033 14945266 -227719087 + (TCCA)n Simple_repeat Simple_repeat 1 233 0 252 275 174 20 chr1 14945528 14945544 -227718809 - MIR SINE MIR -65 197 185 912 169 106 0 chr1 14945544 14945733 -227718620 - MER3 DNA MER1_type 0 209 1 252 275 174 20 chr1 14945733 14945865 -227718488 - MIR SINE MIR -77 185 26 246 287 59 37 chr1 14945953 14946089 -227718264 + L2 LINE L2 2236 2374 -940 338 259 25 99 chr1 14946104 14946266 -227718087 + MLT1K LTR MaLR 57 206 -382 387 0 0 0 chr1 14946319 14946362 -227717991 + (CA)n Simple_repeat Simple_repeat 1 43 0 566 263 25 68 chr1 14947254 14947373 -227716980 - MIR SINE MIR -17 245 139 2120 138 7 0 chr1 14947373 14947677 -227716676 + AluSx SINE Alu 3 308 -4 566 263 25 68 chr1 14947677 14947793 -227716560 - MIR SINE MIR -123 139 20 987 150 0 0 chr1 14949161 14949314 -227715039 - FRAM SINE Alu -13 153 1 415 207 107 25 chr1 14949493 14949614 -227714739 + MIR SINE MIR 13 143 -119 263 223 34 40 chr1 14949761 14949936 -227714417 + (CGATG)n Simple_repeat Simple_repeat 5 178 0 182 152 0 22 chr1 14949941 14949987 -227714366 + (CTATG)n Simple_repeat Simple_repeat 5 49 0 309 323 21 0 chr1 14950424 14950520 -227713833 - MIR SINE MIR -71 191 94 1876 167 7 0 chr1 14951272 14951566 -227712787 - AluJo SINE Alu -16 296 1 273 215 8 74 chr1 14951797 14951918 -227712435 - L2 LINE L2 -272 3000 2888 1549 223 95 19 chr1 14951920 14952342 -227712011 - MLT1C LTR MaLR -8 459 6 183 275 25 50 chr1 14952868 14952948 -227711405 - L3 LINE CR1 -104 1473 1396 454 256 110 52 chr1 14953068 14953259 -227711094 - MIR SINE MIR -43 219 18 2323 90 3 0 chr1 14953423 14953722 -227710631 - AluSg SINE Alu -10 300 1 287 274 192 27 chr1 14954979 14955125 -227709228 + MIR SINE MIR 35 204 -58 1225 276 93 30 chr1 14955932 14956428 -227707925 - MLT1K LTR MaLR -6 582 56 424 79 22 124 chr1 14956575 14956614 -227707739 + MADE1 DNA Mariner 1 28 -52 2127 139 0 3 chr1 14956614 14956909 -227707444 - AluSx SINE Alu -18 294 1 424 79 22 124 chr1 14956909 14956958 -227707395 + MADE1 DNA Mariner 28 80 0 311 293 54 20 chr1 14957325 14957472 -227706881 + L1M4 LINE L1 2652 2803 -3343 2080 132 3 10 chr1 14957512 14957807 -227706546 + AluSx SINE Alu 3 295 -17 395 83 17 0 chr1 14957836 14957896 -227706457 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 555 278 68 19 chr1 14958539 14958744 -227705609 + MIR SINE MIR 5 219 -43 2464 45 0 17 chr1 14958776 14959065 -227705288 - AluY SINE Alu -12 299 16 2083 156 71 82 chr1 14959316 14959492 -227704861 + L1MB8 LINE L1 5622 5798 -380 2522 90 0 0 chr1 14959492 14959804 -227704549 + AluSx SINE Alu 1 312 0 2083 156 71 82 chr1 14959804 14960194 -227704159 + L1MB8 LINE L1 5798 6178 0 1837 138 29 55 chr1 14960450 14960762 -227703591 - AluJb SINE Alu -8 304 1 445 240 87 47 chr1 14960762 14960903 -227703450 - MIR SINE MIR -39 223 74 216 333 148 12 chr1 14960964 14961126 -227703227 - L3b LINE CR1 -206 1377 1194 240 289 143 0 chr1 14962194 14962300 -227702053 + MIR SINE MIR 49 170 -38 2537 156 31 11 chr1 14963205 14963653 -227700700 + MSTB2 LTR MaLR 1 457 0 284 214 0 0 chr1 14963791 14963847 -227700506 + MIR SINE MIR 91 146 -116 440 295 98 37 chr1 14964422 14964630 -227699723 + MIR SINE MIR 19 229 -33 186 281 167 10 chr1 14964810 14964906 -227699447 + L2 LINE L2 3201 3311 -2 249 384 9 9 chr1 14964913 14965030 -227699323 + MIR SINE MIR 24 140 -122 706 169 137 0 chr1 14965032 14965191 -227699162 - MER5A DNA MER1_type -1 188 5 285 357 9 9 chr1 14965915 14966027 -227698326 - MIR SINE MIR -127 135 24 251 323 219 10 chr1 14966206 14966407 -227697946 - MIR SINE MIR -3 259 17 229 319 160 8 chr1 14967283 14967402 -227696951 - L2 LINE L2 -3 3269 3133 645 231 39 19 chr1 14967439 14967595 -227696758 + MIR SINE MIR 42 200 -62 2339 88 3 7 chr1 14967770 14968064 -227696289 + AluSc SINE Alu 1 293 -16 241 185 15 92 chr1 14968569 14968634 -227695719 + MIR SINE MIR 203 262 0 2019 124 0 3 chr1 14970460 14970789 -227693564 - AluSx SINE Alu 0 328 1 188 283 0 33 chr1 14971292 14971352 -227693001 - L2 LINE L2 -42 3230 3173 * 321 228 228 8 chr1 14971349 14971476 -227692877 - MIR3 SINE MIR -27 181 27 211 258 97 0 chr1 14972402 14972464 -227691889 + L2 LINE L2 3241 3308 -5 2312 91 14 0 chr1 14973338 14973634 -227690719 + AluSc SINE Alu 1 300 -9 486 245 51 70 chr1 14973637 14973821 -227690532 + MIR SINE MIR 2 189 -63 1762 254 58 4 chr1 14974185 14974649 -227689704 + LTR16C LTR ERVL 1 489 -2 2431 186 23 45 chr1 14974742 14975258 -227689095 + MLT1D LTR MaLR 1 505 0 349 250 42 21 chr1 14975295 14975391 -227688962 - MIR SINE MIR -113 149 52 254 289 22 89 chr1 14975778 14975913 -227688440 - L2 LINE L2 -6 3266 3141 248 300 130 10 chr1 14975979 14976079 -227688274 - L2 LINE L2 -16 3256 3145 2044 142 38 57 chr1 14977051 14977113 -227687240 + L1MB3 LINE L1 5770 5832 -351 1957 159 7 7 chr1 14977113 14977414 -227686939 + AluJb SINE Alu 1 301 -11 2044 142 38 57 chr1 14977414 14977715 -227686638 + L1MB3 LINE L1 5832 6137 -46 2508 37 16 47 chr1 14977715 14978036 -227686317 + AluY SINE Alu 1 311 0 522 46 0 0 chr1 14978042 14978107 -227686246 + (TA)n Simple_repeat Simple_repeat 1 65 0 2044 142 38 57 chr1 14978107 14978157 -227686196 + L1MB3 LINE L1 6142 6183 0 2283 186 50 17 chr1 14978301 14978463 -227685890 + L1PA8 LINE L1 5629 5784 -388 2357 172 16 12 chr1 14978463 14978887 -227685466 + MSTB LTR MaLR 1 426 0 2283 186 50 17 chr1 14978887 14979247 -227685106 + L1PA8 LINE L1 5784 6168 -4 1299 207 3 50 chr1 14979242 14979561 -227684792 + L1ME2 LINE L1 5860 6163 -1 * 314 239 111 39 chr1 14979574 14979698 -227684655 - MER5A DNA MER1_type -28 161 19 720 198 21 64 chr1 14979879 14980066 -227684287 + MIR SINE MIR 34 212 -50 2351 211 30 29 chr1 14980067 14980625 -227683728 + MER74B LTR ERVL 59 617 -5 262 308 30 38 chr1 14980702 14980835 -227683518 + L2 LINE L2 3120 3251 -62 256 312 0 0 chr1 14980885 14980962 -227683391 + L2 LINE L2 3191 3267 -5 220 338 19 45 chr1 14980982 14981080 -227683273 - MIR3 SINE MIR -52 156 62 1883 201 74 83 chr1 14981080 14981637 -227682716 - MLT2B3 LTR ERVL 0 554 3 220 338 19 45 chr1 14981637 14981692 -227682661 - MIR3 SINE MIR -146 62 7 185 308 0 0 chr1 14982580 14982632 -227681721 + L2 LINE L2 3243 3294 -19 2943 132 0 0 chr1 14982729 14983176 -227681177 - L1MB7 LINE L1 -17 6167 5721 281 313 47 42 chr1 14983178 14983369 -227680984 - MIR SINE MIR -60 202 16 1348 175 13 9 chr1 14984695 14984923 -227679430 + AluJo SINE Alu 83 311 -1 435 335 13 25 chr1 14985510 14985668 -227678685 + MIR3 SINE MIR 5 160 -48 288 284 53 21 chr1 14985673 14985768 -227678585 - MER5A DNA MER1_type -4 185 88 242 284 14 0 chr1 14986113 14986187 -227678166 + MIR3 SINE MIR 119 193 -15 1205 258 94 41 chr1 14986601 14987089 -227677264 + LTR67 LTR ERVL 3 516 -41 693 286 37 11 chr1 14988320 14988509 -227675844 - L2 LINE L2 0 3313 3120 198 222 19 0 chr1 14988541 14988595 -227675758 + L2 LINE L2 3009 3063 -209 905 229 57 14 chr1 14988639 14988849 -227675504 - MER20 DNA MER1_type 0 219 1 505 211 0 10 chr1 14988865 14988969 -227675384 + MER5A DNA MER1_type 10 112 -77 510 320 61 17 chr1 14989030 14989211 -227675142 + MER5A DNA MER1_type 1 189 0 872 198 10 52 chr1 14989212 14989404 -227674949 + MER5A DNA MER1_type 6 189 0 250 121 91 0 chr1 14989547 14989613 -227674740 + GA-rich Low_complexity Low_complexity 3 74 0 1932 169 0 10 chr1 14989925 14990239 -227674114 - AluJo SINE Alu -1 311 1 680 181 0 15 chr1 14990280 14990413 -227673940 - MER20 DNA MER1_type 0 219 89 216 308 15 0 chr1 14991078 14991143 -227673210 + GA-rich Low_complexity Low_complexity 2 67 0 185 281 53 0 chr1 14991245 14991302 -227673051 + MIR SINE MIR 88 147 -61 932 267 75 34 chr1 14992530 14992705 -227671648 + MLT1C LTR MaLR 6 172 -295 1988 98 8 0 chr1 14992705 14992961 -227671392 + AluSc SINE Alu 39 296 -13 932 267 75 34 chr1 14992961 14993227 -227671126 + MLT1C LTR MaLR 172 465 -2 189 0 0 0 chr1 14993747 14993768 -227670585 + (T)n Simple_repeat Simple_repeat 1 21 0 194 297 0 16 chr1 14994009 14994073 -227670280 - MIR SINE MIR -94 168 106 295 258 37 121 chr1 14994681 14994746 -227669607 - MER5B DNA MER1_type -3 175 106 2520 83 0 6 chr1 14994746 14995059 -227669294 + AluY SINE Alu 1 311 0 295 258 37 121 chr1 14995059 14995183 -227669170 - MER5B DNA MER1_type -72 106 2 2464 181 41 39 chr1 14995237 14995264 -227669089 - L1MB2 LINE L1 -185 5986 5961 2152 122 0 0 chr1 14995264 14995550 -227668803 - AluSx SINE Alu -26 286 1 2464 181 41 39 chr1 14995550 14996039 -227668314 - L1MB2 LINE L1 -210 5961 5466 196 50 0 50 chr1 14996039 14996079 -227668274 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2464 181 41 39 chr1 14996079 14996125 -227668228 - L1MB2 LINE L1 -705 5466 5422 249 260 77 39 chr1 14996295 14996399 -227667954 + MIR SINE MIR 46 153 -109 1580 178 0 29 chr1 14996444 14996719 -227667634 + AluJo SINE Alu 21 287 -25 373 273 11 0 chr1 14996719 14996807 -227667546 + L1MC4 LINE L1 6615 6703 -1339 371 266 0 43 chr1 14996730 14996824 -227667529 - L1MC4 LINE L1 -1339 6703 6614 * 239 300 0 0 chr1 14996838 14996898 -227667455 + MIR SINE MIR 194 253 -9 384 171 0 0 chr1 14996968 14997050 -227667303 + (CA)n Simple_repeat Simple_repeat 2 83 0 325 253 22 146 chr1 14997597 14997775 -227666578 - MIR SINE MIR -83 179 24 1853 118 10 80 chr1 14997775 14998089 -227666264 - AluSx SINE Alu -20 292 1 1139 174 5 0 chr1 14998115 14998311 -227666042 + MER58A DNA MER1_type 28 224 0 459 309 27 13 chr1 14998516 14998665 -227665688 + MIR SINE MIR 98 248 -14 276 242 42 53 chr1 14999038 14999133 -227665220 + MIR SINE MIR 6 99 -163 216 0 0 0 chr1 14999135 14999159 -227665194 + (A)n Simple_repeat Simple_repeat 1 24 0 379 230 9 9 chr1 14999182 14999295 -227665058 + MER96B DNA MER1_type? 83 195 -222 236 220 220 0 chr1 14999333 14999424 -227664929 + MIR SINE MIR 149 259 -3 1758 146 39 4 chr1 15000432 15000732 -227663621 - AluSx SINE Alu 0 312 13 331 309 53 7 chr1 15001169 15001314 -227663039 - MIR SINE MIR -6 256 105 263 248 329 13 chr1 15001342 15001491 -227662862 - MIR SINE MIR 0 262 67 195 42 0 0 chr1 15001797 15001821 -227662532 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 290 252 26 35 chr1 15001886 15002001 -227662352 - L2 LINE L2 -1 3312 3199 746 193 50 7 chr1 15002177 15002317 -227662036 + MER5A DNA MER1_type 6 151 -38 2518 72 3 3 chr1 15002318 15002623 -227661730 + AluSp SINE Alu 1 305 -8 250 314 121 27 chr1 15002658 15002819 -227661534 + MIR SINE MIR 19 208 -54 2294 122 119 10 chr1 15002819 15003204 -227661149 + MSTA LTR MaLR 2 428 0 250 314 121 27 chr1 15003204 15003265 -227661088 + MIR SINE MIR 208 262 0 328 294 37 9 chr1 15003327 15003436 -227660917 + MER81 DNA DNA 1 112 -2 2710 149 18 2 chr1 15003463 15003907 -227660446 + LTR32 LTR ERVL 18 468 -3 638 216 126 6 chr1 15004548 15004715 -227659638 + MER5A DNA MER1_type 2 188 -1 856 169 5 82 chr1 15005369 15005392 -227658961 + MER20 DNA MER1_type 40 63 -156 2238 121 0 3 chr1 15005392 15005697 -227658656 - AluSq SINE Alu -9 304 1 856 169 5 82 chr1 15005697 15005868 -227658485 + MER20 DNA MER1_type 63 219 0 310 263 38 0 chr1 15005953 15006033 -227658320 - MIR SINE MIR -5 257 175 699 236 50 105 chr1 15006033 15006394 -227657959 + MER102b DNA MER1_type 1 341 0 180 286 63 0 chr1 15006619 15006682 -227657671 + L2 LINE L2 3165 3231 -82 605 221 32 13 chr1 15006732 15006886 -227657467 - MER20 DNA MER1_type -61 158 2 237 108 0 0 chr1 15006929 15006966 -227657387 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 897 181 0 0 chr1 15006970 15007147 -227657206 + (TGGG)n Simple_repeat Simple_repeat 3 179 0 432 181 0 0 chr1 15007179 15007262 -227657091 + (TGGG)n Simple_repeat Simple_repeat 2 84 0 1671 158 54 24 chr1 15009131 15009428 -227654925 - AluJo SINE Alu -6 306 1 405 200 0 0 chr1 15009571 15009646 -227654707 + MIR SINE MIR 66 140 -122 198 0 0 0 chr1 15009646 15009668 -227654685 + (A)n Simple_repeat Simple_repeat 1 22 0 183 345 36 12 chr1 15009680 15009764 -227654589 + MIR SINE MIR 142 227 -35 603 243 21 0 chr1 15010251 15010395 -227653958 + MIR SINE MIR 20 166 -96 386 302 75 42 chr1 15011397 15011609 -227652744 - L1ME4a LINE L1 -57 6064 5846 290 303 34 0 chr1 15011941 15012060 -227652293 + Charlie8 DNA MER1_type 73 195 -2222 1047 200 28 9 chr1 15012946 15013161 -227651192 + MER20 DNA MER1_type 1 219 0 927 179 18 12 chr1 15013268 15013436 -227650917 - AluJb SINE Alu -7 305 137 957 268 21 18 chr1 15013453 15013781 -227650572 - L1ME1 LINE L1 -26 6140 5812 6666 142 35 21 chr1 15013781 15015040 -227649313 + L1PA14 LINE L1 3980 5221 -940 2525 78 0 0 chr1 15015040 15015349 -227649004 + AluY SINE Alu 1 309 -2 6666 142 35 21 chr1 15015349 15015392 -227648961 + L1PA14 LINE L1 5221 5262 -899 2314 85 0 3 chr1 15015392 15015698 -227648655 + AluSq SINE Alu 4 308 -5 6666 142 35 21 chr1 15015698 15016538 -227647815 + L1PA14 LINE L1 5262 6160 -1 1836 209 47 59 chr1 15016565 15016872 -227647481 - L1ME1 LINE L1 -397 5769 5460 2211 119 58 0 chr1 15016872 15017251 -227647102 - L1MA5A LINE L1 0 6297 5897 1836 209 47 59 chr1 15017251 15017276 -227647077 - L1ME1 LINE L1 -706 5460 5436 2097 88 0 3 chr1 15017276 15017583 -227646770 - AluY SINE Alu 0 306 1 1836 209 47 59 chr1 15017583 15017935 -227646418 - L1ME1 LINE L1 -730 5436 5091 506 300 64 54 chr1 15017968 15018358 -227645995 + MLT1J LTR MaLR 113 506 -5 559 265 269 12 chr1 15018524 15018781 -227645572 + MLT1K LTR MaLR 104 426 -162 258 249 18 121 chr1 15018815 15019014 -227645339 - L2 LINE L2 -208 3064 2884 284 294 137 71 chr1 15020568 15020962 -227643391 - L2 LINE L2 -345 2969 2550 2326 91 0 0 chr1 15021102 15021410 -227642943 - AluSx SINE Alu 0 312 5 1882 208 49 22 chr1 15021446 15021898 -227642455 + MLT1C LTR MaLR 2 465 -2 297 223 15 115 chr1 15022001 15022131 -227642222 + MER5B DNA MER1_type 1 117 -61 692 248 36 82 chr1 15022152 15022411 -227641942 + MIR SINE MIR 12 248 -14 283 339 40 16 chr1 15023047 15023171 -227641182 + MIR SINE MIR 116 242 -20 544 262 39 58 chr1 15023407 15023613 -227640740 - MIR3 SINE MIR -6 202 1 417 186 168 26 chr1 15023818 15023931 -227640422 - MER20 DNA MER1_type 0 219 91 529 218 32 24 chr1 15024295 15024419 -227639934 + MER20 DNA MER1_type 47 171 -48 270 324 57 57 chr1 15024559 15024769 -227639584 - MIR SINE MIR -11 251 42 22 0 0 0 chr1 15025794 15025816 -227638537 + AT_rich Low_complexity Low_complexity 1 22 0 1962 164 115 8 chr1 15026038 15026411 -227637942 - MLT1D LTR MaLR 0 505 93 2100 117 0 0 chr1 15026484 15026784 -227637569 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr1 15027110 15027131 -227637222 + AT_rich Low_complexity Low_complexity 1 21 0 233 273 240 19 chr1 15028268 15028422 -227635931 - MLT1K LTR MaLR 0 588 401 720 279 22 11 chr1 15028799 15028982 -227635371 - MIR SINE MIR -77 185 1 31 0 0 0 chr1 15029145 15029176 -227635177 + AT_rich Low_complexity Low_complexity 1 31 0 833 136 0 0 chr1 15029178 15029296 -227635057 - FLAM_C SINE Alu -15 118 1 471 244 17 35 chr1 15029623 15029738 -227634615 - MER63A DNA MER1_type -35 175 63 2166 114 0 0 chr1 15030554 15030861 -227633492 + AluSx SINE Alu 1 307 -5 228 308 39 26 chr1 15030971 15031049 -227633304 + MIR SINE MIR 125 203 -59 189 0 0 0 chr1 15031701 15031722 -227632631 + (GA)n Simple_repeat Simple_repeat 1 21 0 567 297 27 14 chr1 15032031 15032179 -227632174 - L2 LINE L2 -6 3266 3117 822 252 211 24 chr1 15032192 15032707 -227631646 + L2 LINE L2 2689 3313 0 256 260 60 60 chr1 15033187 15033287 -227631066 + MIR SINE MIR 85 184 -78 256 213 0 0 chr1 15034972 15035019 -227629334 + L2 LINE L2 3226 3272 0 1995 228 42 26 chr1 15035110 15035252 -227629101 + L1M4 LINE L1 2397 2535 -3611 2258 94 0 0 chr1 15035252 15035560 -227628793 - AluY SINE Alu -3 308 1 1995 228 42 26 chr1 15035560 15036063 -227628290 + L1M4 LINE L1 2535 3052 -3094 4255 126 13 25 chr1 15036068 15036760 -227627593 - L1PA15 LINE L1 -9 6156 5473 298 353 9 17 chr1 15036776 15036892 -227627461 - MIR SINE MIR -131 131 17 2300 57 3 3 chr1 15036995 15037292 -227627061 - AluY SINE Alu -14 297 1 2403 90 64 6 chr1 15037781 15038125 -227626228 - THE1B LTR MaLR 0 364 1 585 271 28 39 chr1 15038861 15039042 -227625311 - MIR SINE MIR -78 184 6 377 299 29 15 chr1 15039296 15039433 -227624920 - MIR SINE MIR 0 262 124 2447 169 11 26 chr1 15039717 15040183 -227624170 + L1MB5 LINE L1 5708 6166 -8 1633 172 7 14 chr1 15040202 15040498 -227623855 + AluJo SINE Alu 2 295 -17 514 319 100 26 chr1 15040964 15041193 -227623160 + MIR SINE MIR 10 255 -7 363 387 7 0 chr1 15041325 15041462 -227622891 - MIR3 SINE MIR -49 159 22 299 291 0 36 chr1 15042031 15042141 -227622212 - MIR SINE MIR -4 258 153 601 175 36 90 chr1 15042141 15042307 -227622046 + Tigger1 DNA MER2_type 1 157 -2261 * 1400 129 14 0 chr1 15042301 15042510 -227621843 + Tigger1 DNA MER2_type 2207 2418 0 352 303 69 35 chr1 15043454 15043599 -227620754 + MIR3 SINE MIR 30 179 -29 200 211 0 99 chr1 15043834 15043905 -227620448 - MIR3 SINE MIR -7 201 138 1891 144 7 10 chr1 15044060 15044358 -227619995 - AluSx SINE Alu -15 297 1 217 175 32 48 chr1 15044380 15044443 -227619910 - MIR SINE MIR -131 77 16 198 242 32 48 chr1 15044494 15044556 -227619797 + L2 LINE L2 3202 3262 -10 464 301 71 23 chr1 15044633 15044879 -227619474 - MIR SINE MIR -9 253 4 199 286 78 7 chr1 15046835 15046871 -227617482 - MIR SINE MIR -28 234 202 716 190 140 45 chr1 15046871 15047071 -227617282 + MER20 DNA MER1_type 1 219 0 199 286 78 7 chr1 15047071 15047147 -227617206 - MIR SINE MIR -60 202 113 201 220 60 0 chr1 15047250 15047300 -227617053 - MIR SINE MIR -62 146 94 237 114 0 0 chr1 15047368 15047403 -227616950 + tRNA-Thr-ACA tRNA tRNA 1 35 -41 1046 204 0 0 chr1 15047687 15047868 -227616485 + MER58A DNA MER1_type 42 222 -2 1489 161 0 8 chr1 15047995 15048250 -227616103 - AluJo SINE Alu -13 299 47 2093 71 0 54 chr1 15049178 15049508 -227614845 + AluY SINE Alu 1 314 0 231 257 14 14 chr1 15049832 15049905 -227614448 + MIR SINE MIR 72 143 -66 474 286 67 52 chr1 15051613 15051823 -227612530 + MIR SINE MIR 47 259 -3 1001 249 11 35 chr1 15052269 15052530 -227611823 + MIR SINE MIR 8 262 0 530 225 42 25 chr1 15052611 15052731 -227611622 - L2 LINE L2 0 3313 3192 1272 170 5 9 chr1 15052772 15052990 -227611363 + MER20 DNA MER1_type 2 218 -1 669 253 95 59 chr1 15053572 15053764 -227610589 + MIR SINE MIR 13 212 -50 251 294 110 44 chr1 15053764 15053900 -227610453 + MIR SINE MIR 3 147 -115 2126 129 11 107 chr1 15053905 15054346 -227610007 + Tigger2a DNA MER2_type 2 400 -34 304 271 34 8 chr1 15058445 15058563 -227605790 - L1ME4a LINE L1 0 6121 6001 198 0 0 0 chr1 15059012 15059034 -227605319 + (T)n Simple_repeat Simple_repeat 1 22 0 39 50 0 0 chr1 15060522 15060582 -227603771 + GC_rich Low_complexity Low_complexity 1 60 0 25 31 0 0 chr1 15060753 15060785 -227603568 + GC_rich Low_complexity Low_complexity 1 32 0 282 143 0 0 chr1 15060916 15060965 -227603388 + (GGA)n Simple_repeat Simple_repeat 1 49 0 369 245 66 38 chr1 15062150 15062300 -227602053 - MIR SINE MIR -63 145 17 292 224 30 0 chr1 15062477 15062544 -227601809 - tRNA-Ile-ATT tRNA tRNA -4 73 5 3479 140 45 13 chr1 15062668 15063269 -227601084 + L1MB5 LINE L1 5555 6174 0 261 0 0 0 chr1 15063363 15063392 -227600961 + (TG)n Simple_repeat Simple_repeat 1 29 0 190 328 61 46 chr1 15063451 15063582 -227600771 + L2 LINE L2 3122 3254 -18 2159 95 3 13 chr1 15063990 15064305 -227600048 - AluSx SINE Alu 0 312 1 366 146 5 0 chr1 15064376 15064440 -227599913 - L1ME4a LINE L1 -566 5608 5543 1972 108 0 0 chr1 15064543 15064801 -227599552 - AluSg1 SINE Alu -16 293 36 479 259 0 36 chr1 15065458 15065597 -227598756 + MER94 DNA DNA 1 134 0 197 309 96 52 chr1 15065625 15065761 -227598592 - MIR3 SINE MIR -27 181 40 224 320 21 10 chr1 15065888 15065985 -227598368 + L2 LINE L2 2919 3016 -297 277 304 104 32 chr1 15066522 15066647 -227597706 - MIR SINE MIR -50 212 79 415 228 52 59 chr1 15067156 15067292 -227597061 + MER5A DNA MER1_type 55 189 0 288 0 0 0 chr1 15068250 15068282 -227596071 + (TG)n Simple_repeat Simple_repeat 2 33 0 670 299 50 14 chr1 15068756 15068977 -227595376 + MIR SINE MIR 24 252 -10 201 254 51 0 chr1 15068980 15069039 -227595314 + (ATGGTG)n Simple_repeat Simple_repeat 3 64 0 364 226 38 47 chr1 15071056 15071162 -227593191 - MER91A DNA MER1_type -10 186 82 601 249 12 29 chr1 15071555 15071728 -227592625 - MIR SINE MIR -88 174 5 2349 146 37 51 chr1 15071867 15072239 -227592114 + MSTB LTR MaLR 1 368 -58 2460 97 0 0 chr1 15072239 15072547 -227591806 - AluSx SINE Alu -4 308 1 2349 146 37 51 chr1 15072547 15072606 -227591747 + MSTB LTR MaLR 368 426 0 1615 178 0 48 chr1 15072879 15073188 -227591165 + AluJo SINE Alu 19 312 0 330 227 0 27 chr1 15073188 15073263 -227591090 - MIR3 SINE MIR -43 165 93 247 140 16 8 chr1 15074048 15074109 -227590244 + MLT1I LTR MaLR 73 120 -289 293 314 8 25 chr1 15074286 15074407 -227589946 + MLT1H LTR MaLR 431 549 0 2226 165 5 30 chr1 15074448 15074758 -227589595 - MLT1B LTR MaLR 0 390 91 2208 102 7 3 chr1 15074758 15075051 -227589302 + AluSp SINE Alu 1 294 -19 2226 165 5 30 chr1 15075051 15075140 -227589213 - MLT1B LTR MaLR -299 91 1 469 289 162 53 chr1 15075140 15075653 -227588700 - MLT1K LTR MaLR -19 569 1 271 350 28 56 chr1 15075752 15075932 -227588421 + MIR SINE MIR 37 211 -51 296 240 163 56 chr1 15075998 15076286 -227588067 + LTR16A LTR ERVL 73 384 -66 796 309 8 27 chr1 15076436 15076692 -227587661 + MIR SINE MIR 2 252 -10 352 327 36 0 chr1 15076699 15076809 -227587544 - L2 LINE L2 -32 3240 3127 291 302 35 26 chr1 15077231 15077347 -227587006 - MIR3 SINE MIR 0 208 92 281 247 65 110 chr1 15077431 15077585 -227586768 + MIR3 SINE MIR 22 168 -40 2715 254 115 33 chr1 15077587 15078992 -227585361 - L2 LINE L2 -12 3301 1789 235 257 0 105 chr1 15078944 15079049 -227585304 + MIR SINE MIR 162 255 -7 * 1429 81 6 0 chr1 15079183 15079396 -227584957 - AluSp SINE Alu 0 322 109 266 266 13 13 chr1 15080186 15080265 -227584088 + CT-rich Low_complexity Low_complexity 2 80 0 884 138 0 8 chr1 15080567 15080697 -227583656 + FLAM_C SINE Alu 9 137 -6 1400 199 52 4 chr1 15080699 15080818 -227583535 + AluJo SINE Alu 1 113 -199 189 0 0 0 chr1 15080818 15080839 -227583514 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1400 199 52 4 chr1 15080839 15080986 -227583367 + AluJo SINE Alu 113 280 -32 336 161 0 0 chr1 15080986 15081048 -227583305 + GA-rich Low_complexity Low_complexity 3 64 0 282 29 0 0 chr1 15081059 15081094 -227583259 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 688 272 25 0 chr1 15081580 15081780 -227582573 - MIR SINE MIR -40 222 15 1825 166 0 35 chr1 15083899 15084212 -227580141 - AluJb SINE Alu -10 302 1 453 267 34 75 chr1 15084261 15084412 -227579941 - MIR SINE MIR -63 145 6 2101 129 0 10 chr1 15084526 15084821 -227579532 - AluSx SINE Alu -20 292 1 554 188 27 0 chr1 15085241 15085353 -227579000 + MLT1A1 LTR MaLR 185 299 -66 197 32 0 32 chr1 15085563 15085594 -227578759 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 764 160 0 8 chr1 15085608 15085727 -227578626 - FLAM_C SINE Alu -24 119 2 404 125 0 0 chr1 15085874 15085938 -227578415 + L1PB1 LINE L1 6086 6149 -2 28 29 0 0 chr1 15085938 15085973 -227578380 + AT_rich Low_complexity Low_complexity 1 35 0 1772 183 27 43 chr1 15086400 15086771 -227577582 + MLT1A1 LTR MaLR 1 365 0 273 265 44 0 chr1 15086784 15086852 -227577501 + MIR3 SINE MIR 91 161 -47 2583 140 80 2 chr1 15086892 15087293 -227577060 + MSTB1 LTR MaLR 1 432 0 302 318 20 27 chr1 15087309 15087457 -227576896 + MER117 DNA MER1_type 49 195 -2 729 266 42 68 chr1 15087501 15087764 -227576589 + MIR SINE MIR 2 257 -5 305 268 18 89 chr1 15087841 15088009 -227576344 + L1ME4a LINE L1 5880 6035 -86 809 215 78 49 chr1 15088959 15089243 -227575110 - L1MD2 LINE L1 0 6359 6068 341 188 23 148 chr1 15089243 15089371 -227574982 - MIR SINE MIR -64 198 87 537 281 67 11 chr1 15089894 15090072 -227574281 + MER117 DNA MER1_type 10 197 0 368 306 37 0 chr1 15090089 15090197 -227574156 - MIR SINE MIR -78 130 19 391 336 27 7 chr1 15090368 15090514 -227573839 - MIR SINE MIR -4 258 110 591 261 7 7 chr1 15090550 15090688 -227573665 - MIR SINE MIR -18 244 107 189 175 200 38 chr1 15090720 15090800 -227573553 - MIR SINE MIR -90 118 26 3290 164 75 37 chr1 15091272 15091592 -227572761 + L1MB4 LINE L1 5442 5748 -432 1865 176 0 10 chr1 15091592 15091916 -227572437 + AluSq SINE Alu 1 313 0 219 88 0 0 chr1 15091921 15091955 -227572398 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 3290 164 75 37 chr1 15091955 15092331 -227572022 + L1MB4 LINE L1 5751 6171 -9 192 231 0 0 chr1 15092595 15092634 -227571719 + L2 LINE L2 3021 3059 -254 219 139 0 0 chr1 15093887 15093923 -227570430 + (T)n Simple_repeat Simple_repeat 1 36 0 541 267 40 15 chr1 15094226 15094428 -227569925 + L1ME3A LINE L1 5956 6162 -8 1816 145 27 27 chr1 15094429 15094725 -227569628 - AluJo SINE Alu -16 296 1 206 118 0 0 chr1 15094743 15094777 -227569576 + (A)n Simple_repeat Simple_repeat 1 34 0 591 259 37 31 chr1 15094792 15094954 -227569399 + MIR SINE MIR 76 238 -24 2382 79 7 0 chr1 15095728 15096019 -227568334 - AluSx SINE Alu -16 296 4 195 290 29 14 chr1 15096343 15096412 -227567941 + L2 LINE L2 3194 3263 -9 181 273 23 0 chr1 15096738 15096782 -227567571 + L2 LINE L2 3250 3294 -19 * 289 286 50 76 chr1 15096773 15096892 -227567461 - L2 LINE L2 -10 3303 3188 629 187 8 32 chr1 15096899 15097022 -227567331 - L2 LINE L2 -13 3300 3181 253 262 117 29 chr1 15097863 15097966 -227566387 - L2 LINE L2 -23 3290 3179 1769 184 3 20 chr1 15099976 15100281 -227564072 - AluJo SINE Alu -12 300 1 507 268 49 12 chr1 15100287 15100451 -227563902 + MIR SINE MIR 46 215 -47 1335 248 81 13 chr1 15101110 15101667 -227562686 + MLT1E3 LTR MaLR 5 624 0 770 272 137 40 chr1 15101875 15102305 -227562048 + L2 LINE L2 2829 3300 -13 216 0 0 0 chr1 15102305 15102329 -227562024 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 404 260 94 83 chr1 15102484 15102561 -227561792 + MER5A DNA MER1_type 1 76 -113 2199 104 0 39 chr1 15102561 15102868 -227561485 + AluSq SINE Alu 1 295 -18 414 0 0 0 chr1 15102871 15102917 -227561436 + (CA)n Simple_repeat Simple_repeat 2 47 0 404 260 94 83 chr1 15102917 15103016 -227561337 + MER5A DNA MER1_type 77 183 -6 2502 47 0 3 chr1 15103812 15104112 -227560241 + AluY SINE Alu 1 299 -12 471 189 112 97 chr1 15104486 15104561 -227559792 + MER5A DNA MER1_type 4 76 -113 2274 92 19 29 chr1 15104561 15104875 -227559478 + AluSp SINE Alu 3 313 0 471 189 112 97 chr1 15104875 15104982 -227559371 + MER5A DNA MER1_type 76 189 0 207 214 24 0 chr1 15104982 15105022 -227559331 - MIR SINE MIR -98 164 124 2604 192 20 53 chr1 15106304 15106505 -227557848 - MER119 DNA MER1_type -3 580 374 1967 177 0 0 chr1 15106505 15106815 -227557538 - AluSx SINE Alu -2 310 1 2604 192 20 53 chr1 15106815 15107213 -227557140 - MER119 DNA MER1_type -209 374 1 291 316 86 38 chr1 15107226 15107435 -227556918 - MIR SINE MIR -23 239 21 331 282 69 52 chr1 15107460 15107634 -227556719 + MIR SINE MIR 47 223 -39 246 266 78 0 chr1 15108303 15108367 -227555986 + MIR3 SINE MIR 14 82 -126 606 315 30 5 chr1 15108523 15108723 -227555630 + MIR SINE MIR 3 207 -55 2357 75 0 10 chr1 15108790 15109082 -227555271 + AluSg SINE Alu 1 289 -21 1042 179 104 21 chr1 15109096 15109336 -227555017 - MER58B DNA MER1_type -1 340 81 464 270 34 34 chr1 15110281 15110429 -227553924 - MIR SINE MIR -57 205 58 267 275 44 35 chr1 15110535 15110653 -227553700 + MER5B DNA MER1_type 2 104 -74 2734 134 11 88 chr1 15110707 15110854 -227553499 + MER1A DNA MER1_type 35 192 -2510 2591 70 0 3 chr1 15110854 15111168 -227553185 - AluSq SINE Alu 0 313 1 2734 134 11 88 chr1 15111168 15111414 -227552939 + MER1A DNA MER1_type 192 379 -2323 2273 72 48 0 chr1 15111414 15111705 -227552648 + AluSp SINE Alu 9 313 0 2734 134 11 88 chr1 15111705 15111846 -227552507 + MER1A DNA MER1_type 379 529 0 334 314 60 5 chr1 15112142 15112259 -227552094 + MIR SINE MIR 2 121 -87 950 159 77 0 chr1 15112295 15112465 -227551888 - MER5A DNA MER1_type -4 185 3 478 223 160 6 chr1 15113274 15113425 -227550928 + MER5A DNA MER1_type 4 181 -8 365 255 170 21 chr1 15113476 15113617 -227550736 + MIR SINE MIR 28 189 -73 221 317 121 81 chr1 15113614 15114011 -227550342 - L2 LINE L2 -3 3310 2898 * 517 236 0 9 chr1 15115247 15115353 -227549000 + L2 LINE L2 3200 3304 -9 1861 171 16 16 chr1 15116019 15116328 -227548025 - AluJb SINE Alu -3 309 1 299 295 38 60 chr1 15116344 15116527 -227547826 + L1MC5 LINE L1 7751 7929 -32 324 293 135 90 chr1 15116930 15116992 -227547361 - L1MC4a LINE L1 -1930 5878 5820 2232 120 13 3 chr1 15116992 15117300 -227547053 - AluSx SINE Alu -1 311 1 324 293 135 90 chr1 15117300 15117571 -227546782 - L1MC4a LINE L1 -1988 5820 5530 2795 104 0 5 chr1 15117673 15118048 -227546305 - THE1C LTR MaLR -2 373 1 1032 119 0 0 chr1 15118306 15118449 -227545904 + AluSg/x SINE Alu 152 294 -18 223 348 85 17 chr1 15119028 15119146 -227545207 + MIR SINE MIR 24 149 -113 1043 294 101 29 chr1 15119146 15119312 -227545041 + L2 LINE L2 2815 2968 -345 2285 125 0 0 chr1 15119312 15119615 -227544738 - AluSx SINE Alu -9 303 1 1043 294 101 29 chr1 15119615 15119904 -227544449 + L2 LINE L2 2968 3303 -10 801 214 140 39 chr1 15121476 15121812 -227542541 + MLT1C LTR MaLR 18 387 -80 362 330 76 0 chr1 15121815 15121933 -227542420 + L2 LINE L2 3141 3267 -5 253 411 76 13 chr1 15122536 15122840 -227541513 - L2 LINE L2 -572 2742 2420 225 224 0 0 chr1 15122976 15123034 -227541319 + (CA)n Simple_repeat Simple_repeat 1 58 0 600 132 0 11 chr1 15123985 15124076 -227540277 + AluJo SINE Alu 46 135 -177 2073 153 3 6 chr1 15124076 15124389 -227539964 + AluJb SINE Alu 1 312 0 1559 199 3 52 chr1 15125188 15125514 -227538839 - AluJo SINE Alu -2 310 1 967 203 56 0 chr1 15125514 15125711 -227538642 - MER20 DNA MER1_type -11 208 1 397 281 69 30 chr1 15125838 15126041 -227538312 + MLT1H LTR MaLR 109 319 -230 512 301 127 34 chr1 15126833 15127218 -227537135 + L2 LINE L2 2553 2973 -341 857 234 157 71 chr1 15127218 15127709 -227536644 - MLT1F1 LTR MaLR 0 567 10 893 167 0 0 chr1 15127814 15127946 -227536407 - FLAM_A SINE Alu -1 132 1 1792 141 3 34 chr1 15127979 15128270 -227536083 - AluJo SINE Alu -30 282 1 946 257 127 40 chr1 15128274 15128964 -227535389 - L2 LINE L2 -10 3303 2535 224 338 84 0 chr1 15129033 15129104 -227535249 + L2 LINE L2 3119 3195 -77 352 277 15 58 chr1 15129173 15129310 -227535043 + MIR SINE MIR 18 148 -60 339 309 170 5 chr1 15129922 15130110 -227534243 + MIR SINE MIR 20 238 -24 326 259 52 52 chr1 15131221 15131337 -227533016 + L2 LINE L2 3197 3312 -1 262 75 100 0 chr1 15132354 15132394 -227531959 - LTR33 LTR ERVL -2 519 476 1321 182 68 46 chr1 15132428 15132543 -227531810 + MLT1B LTR MaLR 1 112 -278 5112 107 13 18 chr1 15132543 15132768 -227531585 - L1MA5A LINE L1 -1 6296 6071 3476 122 11 39 chr1 15132768 15133310 -227531043 - MER1A DNA MER1_type 0 527 1 5112 107 13 18 chr1 15133310 15133869 -227530484 - L1MA5A LINE L1 -226 6071 5516 1321 182 68 46 chr1 15133869 15134162 -227530191 + MLT1B LTR MaLR 112 371 -19 362 272 82 38 chr1 15134258 15134416 -227529937 - LTR33 LTR ERVL -229 292 128 1487 173 11 35 chr1 15135262 15135546 -227528807 - AluJb SINE Alu -5 307 31 2655 103 11 16 chr1 15135546 15135923 -227528430 - THE1C LTR MaLR 0 375 1 445 275 99 33 chr1 15136049 15136231 -227528122 + MIR SINE MIR 45 238 -24 360 0 0 0 chr1 15136805 15136845 -227527508 + (CA)n Simple_repeat Simple_repeat 1 40 0 1915 146 13 26 chr1 15137359 15137661 -227526692 - AluJb SINE Alu -14 298 1 1753 157 3 49 chr1 15137741 15138047 -227526306 + AluJo SINE Alu 1 292 -20 1956 81 4 0 chr1 15138687 15138922 -227525431 - AluSg SINE Alu -16 294 59 740 302 65 44 chr1 15139044 15139249 -227525104 + L2 LINE L2 2779 2978 -335 762 244 38 38 chr1 15139249 15139458 -227524895 - MER63A DNA MER1_type -1 209 1 740 302 65 44 chr1 15139458 15139773 -227524580 + L2 LINE L2 2978 3308 -5 1589 147 0 114 chr1 15141822 15142163 -227522190 - AluJo SINE Alu 0 302 1 1147 166 11 0 chr1 15142359 15142546 -227521807 + MER5A DNA MER1_type 1 189 0 270 326 65 69 chr1 15142770 15143015 -227521338 + L2 LINE L2 3028 3271 -1 2367 96 7 0 chr1 15143368 15143661 -227520692 + AluSg SINE Alu 1 295 -15 795 293 0 15 chr1 15144345 15144550 -227519803 - MIR SINE MIR -46 216 15 222 37 0 0 chr1 15144680 15144707 -227519646 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2051 140 7 3 chr1 15146229 15146522 -227517831 - AluSx SINE Alu -18 294 1 842 77 0 8 chr1 15146630 15146747 -227517606 + Tigger2 DNA MER2_type 584 699 -2019 22 0 0 0 chr1 15147103 15147125 -227517228 + AT_rich Low_complexity Low_complexity 1 22 0 2124 130 0 16 chr1 15147380 15147688 -227516665 + AluSx SINE Alu 1 303 -9 219 262 0 16 chr1 15147783 15147844 -227516509 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 198 275 25 50 chr1 15148870 15148950 -227515403 - L3 LINE CR1 -104 1473 1396 491 256 110 52 chr1 15149070 15149261 -227515092 - MIR SINE MIR -43 219 18 2305 90 3 0 chr1 15149425 15149724 -227514629 - AluSg SINE Alu -10 300 1 314 274 192 27 chr1 15150981 15151127 -227513226 + MIR SINE MIR 35 204 -58 1129 273 94 31 chr1 15151934 15152422 -227511931 - MLT1K LTR MaLR -6 582 64 453 79 22 124 chr1 15152577 15152616 -227511737 + MADE1 DNA Mariner 1 28 -52 2117 139 0 3 chr1 15152616 15152911 -227511442 - AluSx SINE Alu -18 294 1 453 79 22 124 chr1 15152911 15152960 -227511393 + MADE1 DNA Mariner 28 80 0 293 293 54 20 chr1 15153327 15153474 -227510879 + L1M4 LINE L1 2652 2803 -3343 2070 132 3 10 chr1 15153514 15153809 -227510544 + AluSx SINE Alu 3 295 -17 395 83 17 0 chr1 15153838 15153898 -227510455 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 594 278 68 19 chr1 15154541 15154746 -227509607 + MIR SINE MIR 5 219 -43 2449 45 0 17 chr1 15154778 15155067 -227509286 - AluY SINE Alu -12 299 16 2073 153 74 72 chr1 15155353 15155494 -227508859 + L1MB8 LINE L1 5644 5783 -395 2514 90 0 0 chr1 15155494 15155806 -227508547 + AluSx SINE Alu 1 312 0 2073 153 74 72 chr1 15155806 15156196 -227508157 + L1MB8 LINE L1 5783 6178 0 1828 138 29 55 chr1 15156452 15156764 -227507589 - AluJb SINE Alu -8 304 1 480 240 87 47 chr1 15156764 15156905 -227507448 - MIR SINE MIR -39 223 74 246 350 153 6 chr1 15156971 15157128 -227507225 - L3b LINE CR1 -210 1373 1194 259 292 139 0 chr1 15158191 15158307 -227506046 + MIR SINE MIR 45 175 -33 2689 158 31 11 chr1 15159207 15159655 -227504698 + MSTB2 LTR MaLR 1 457 0 300 185 0 0 chr1 15159793 15159847 -227504506 + MIR SINE MIR 92 145 -63 194 211 0 127 chr1 15160350 15160421 -227503932 + L2 LINE L2 2916 2977 -336 472 290 103 50 chr1 15160424 15160632 -227503721 + MIR SINE MIR 19 229 -11 205 281 167 10 chr1 15160812 15160908 -227503445 + L2 LINE L2 3201 3311 -2 260 385 8 8 chr1 15160915 15161032 -227503321 + MIR SINE MIR 24 140 -122 706 169 137 0 chr1 15161034 15161193 -227503160 - MER5A DNA MER1_type -1 188 5 285 357 9 9 chr1 15161917 15162029 -227502324 - MIR SINE MIR -127 135 24 251 323 219 10 chr1 15162208 15162409 -227501944 - MIR SINE MIR -3 259 17 225 303 168 17 chr1 15163286 15163405 -227500948 - L2 LINE L2 -3 3269 3133 645 231 39 19 chr1 15163442 15163598 -227500755 + MIR SINE MIR 42 200 -62 2388 88 0 7 chr1 15163773 15164068 -227500285 + AluSc SINE Alu 1 293 -16 228 185 15 92 chr1 15164573 15164638 -227499715 + MIR SINE MIR 203 262 0 206 167 42 21 chr1 15164935 15164983 -227499370 + MIR3 SINE MIR 118 166 -42 315 212 143 28 chr1 15165562 15165702 -227498651 - MIR SINE MIR -63 145 37 204 235 12 37 chr1 15165757 15165838 -227498515 + GA-rich Low_complexity Low_complexity 4 82 0 552 234 12 70 chr1 15165957 15166004 -227498349 - L2 LINE L2 0 3313 3265 1981 143 10 7 chr1 15166004 15166304 -227498049 - AluJo SINE Alu -7 305 5 552 234 12 70 chr1 15166304 15166427 -227497926 - L2 LINE L2 -48 3265 3153 323 311 8 23 chr1 15167067 15167199 -227497154 + MIR SINE MIR 25 154 -108 196 286 0 76 chr1 15167285 15167404 -227496949 + MIR SINE MIR 129 238 -24 207 0 0 0 chr1 15167484 15167507 -227496846 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 453 234 93 0 chr1 15167706 15167813 -227496540 + MER103 DNA DNA 1 117 -49 1016 322 94 2 chr1 15167864 15168289 -227496064 + LTR16B LTR ERVL 1 464 0 931 179 8 0 chr1 15168407 15169082 -227495271 + (TCCA)n Simple_repeat Simple_repeat 1 680 0 462 228 9 9 chr1 15169084 15169198 -227495155 + (CCCA)n Simple_repeat Simple_repeat 1 114 0 431 221 14 62 chr1 15169603 15169748 -227494605 - MIR SINE MIR -34 228 91 291 307 64 29 chr1 15170368 15170508 -227493845 + L2 LINE L2 2902 3046 -226 292 246 82 93 chr1 15170558 15170741 -227493612 + L2 LINE L2 2944 3124 -189 748 268 96 61 chr1 15170843 15171250 -227493103 + HAL1 LINE L1 2087 2507 0 832 304 110 13 chr1 15171731 15172178 -227492175 - L2 LINE L2 0 3313 2824 475 250 36 0 chr1 15172281 15172393 -227491960 + MER63 DNA MER1_type 42 783 -53 2477 57 40 3 chr1 15172571 15172871 -227491482 - AluY SINE Alu 0 311 1 210 345 69 0 chr1 15172917 15173004 -227491349 + L2 LINE L2 2897 2989 -324 559 291 87 12 chr1 15174570 15174811 -227489542 - MIR SINE MIR 0 262 4 1948 152 0 3 chr1 15175085 15175368 -227488985 + AluSx SINE Alu 1 282 -30 226 235 0 0 chr1 15175584 15175635 -227488718 + L1ME1 LINE L1 5610 5660 -510 1195 182 35 117 chr1 15175678 15176047 -227488306 + MLT1A1 LTR MaLR 27 365 0 284 222 5 152 chr1 15176047 15176152 -227488201 + L1ME1 LINE L1 5704 5823 -343 1707 148 94 4 chr1 15176152 15176261 -227488092 + AluJo SINE Alu 1 99 -213 219 36 0 0 chr1 15176261 15176289 -227488064 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1707 148 94 4 chr1 15176289 15176456 -227487897 + AluJo SINE Alu 99 302 -10 284 222 5 152 chr1 15176456 15176508 -227487845 + L1ME1 LINE L1 5823 5815 -351 2274 83 3 3 chr1 15176508 15176796 -227487557 + AluSp SINE Alu 1 288 -25 284 222 5 152 chr1 15176796 15176875 -227487478 + L1ME1 LINE L1 5814 5903 -263 30 0 0 0 chr1 15176886 15176916 -227487437 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr1 15177196 15177236 -227487117 + AT_rich Low_complexity Low_complexity 1 40 0 442 257 74 27 chr1 15178361 15178509 -227485844 + MIR SINE MIR 46 200 -62 225 300 75 33 chr1 15179200 15179320 -227485033 + L2 LINE L2 3187 3311 -2 2605 69 0 0 chr1 15179346 15179650 -227484703 + AluY SINE Alu 1 304 -7 2239 129 0 0 chr1 15179671 15179973 -227484380 + AluSx SINE Alu 1 302 -10 459 52 0 0 chr1 15179979 15180037 -227484316 + (TG)n Simple_repeat Simple_repeat 1 58 0 524 255 64 75 chr1 15180445 15180712 -227483641 + LTR16C LTR ERVL 228 491 0 1132 238 28 11 chr1 15180980 15181266 -227483087 - MER58B DNA MER1_type -12 329 39 1222 125 60 19 chr1 15181282 15181498 -227482855 - MER30 DNA MER1_type -4 226 2 687 286 96 32 chr1 15181527 15181795 -227482558 + MLT1K LTR MaLR 224 520 -68 2302 97 3 7 chr1 15181795 15182094 -227482259 - AluSq SINE Alu -15 298 1 687 286 96 32 chr1 15182094 15182168 -227482185 + MLT1K LTR MaLR 520 588 0 255 31 0 0 chr1 15182635 15182667 -227481686 + (CAG)n Simple_repeat Simple_repeat 2 33 0 1067 65 0 0 chr1 15182847 15182971 -227481382 + AluSq/x SINE Alu 1 124 -188 2152 115 99 10 chr1 15183144 15183536 -227480817 + MSTA LTR MaLR 1 427 -1 1395 237 65 16 chr1 15183564 15183931 -227480422 + MLT1K LTR MaLR 137 521 -67 216 335 78 17 chr1 15184176 15184355 -227479998 + L2 LINE L2 2811 3000 -272 1176 143 0 0 chr1 15184423 15184584 -227479769 - FRAM SINE Alu -16 160 1 897 271 180 42 chr1 15184845 15185368 -227478985 + MLT1J LTR MaLR 8 602 -13 265 256 23 12 chr1 15185901 15185987 -227478366 + MER117 DNA MER1_type 111 197 0 1706 110 0 11 chr1 15186485 15186748 -227477605 + L1PB1 LINE L1 5891 6150 -1 253 354 112 6 chr1 15186970 15187131 -227477222 - MIR SINE MIR -65 197 20 185 292 42 14 chr1 15187934 15188006 -227476347 + MIR SINE MIR 47 120 -142 218 314 194 16 chr1 15188033 15188157 -227476196 - L2 LINE L2 -8 3305 3160 842 246 32 14 chr1 15188289 15188509 -227475844 + MIR SINE MIR 3 226 -36 234 62 0 0 chr1 15189288 15189320 -227475033 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2463 87 0 0 chr1 15189875 15190175 -227474178 - AluSx SINE Alu -12 300 1 583 231 46 1 chr1 15190372 15190531 -227473822 - MER20B DNA MER1_type -17 202 33 194 260 10 125 chr1 15192129 15192225 -227472128 + MIR SINE MIR 89 151 -57 2064 137 3 39 chr1 15192225 15192478 -227471875 - MLT1B LTR MaLR -39 351 113 2034 108 14 11 chr1 15192478 15192756 -227471597 - AluSx SINE Alu -14 298 20 2064 137 3 39 chr1 15192756 15192866 -227471487 - MLT1B LTR MaLR -277 113 1 495 253 37 47 chr1 15193755 15193945 -227470408 + MER5A DNA MER1_type 1 188 -1 2243 116 3 7 chr1 15193998 15194300 -227470053 + AluSx SINE Alu 1 301 -11 1845 219 25 8 chr1 15194300 15194702 -227469651 - MLT2C2 LTR ERVL -55 409 1 666 292 83 52 chr1 15194925 15194942 -227469411 + LTR33 LTR ERVL 2 17 -504 2210 120 0 0 chr1 15194942 15195234 -227469119 - AluSq SINE Alu -21 292 1 666 292 83 52 chr1 15195234 15195720 -227468633 + LTR33 LTR ERVL 17 521 0 355 250 12 0 chr1 15196419 15196499 -227467854 - L2 LINE L2 -14 3299 3219 181 167 0 0 chr1 15196631 15196661 -227467692 + L2 LINE L2 3284 3313 0 * 332 293 19 9 chr1 15196658 15196764 -227467589 - L2 LINE L2 -12 3301 3195 314 303 89 0 chr1 15196908 15197071 -227467282 + MIR SINE MIR 2 177 -66 279 217 56 0 chr1 15197075 15197152 -227467201 + MLT1E LTR MaLR 6 94 -499 327 168 39 39 chr1 15197153 15197332 -227467021 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 302 294 0 0 chr1 15197333 15197401 -227466952 - L1MC4 LINE L1 -1354 6688 6621 1403 255 40 24 chr1 15197408 15197828 -227466525 + MLT1E LTR MaLR 165 591 -2 252 356 19 10 chr1 15199006 15199110 -227465243 - MIR SINE MIR -17 245 141 2020 122 37 0 chr1 15199493 15199788 -227464565 + AluSg SINE Alu 1 306 -4 251 396 9 0 chr1 15200098 15200204 -227464149 - MIR SINE MIR -15 247 141 1519 253 102 16 chr1 15200366 15200809 -227463544 - MLT1G1 LTR MaLR -42 553 73 196 298 53 53 chr1 15200854 15200968 -227463385 - MIR SINE MIR -129 133 20 1841 189 3 3 chr1 15201195 15201491 -227462862 + AluJo SINE Alu 3 298 -14 454 315 45 6 chr1 15201638 15201816 -227462537 + MER91A DNA MER1_type 2 186 -10 270 321 36 18 chr1 15202083 15202195 -227462158 + MIR SINE MIR 44 157 -105 575 218 55 12 chr1 15202198 15202363 -227461990 - MER104 DNA MER2_type -4 176 5 306 270 120 10 chr1 15203304 15203404 -227460949 + MIR SINE MIR 30 140 -122 520 278 73 48 chr1 15203513 15203786 -227460567 - L2 LINE L2 0 3313 3034 688 164 45 79 chr1 15203894 15204071 -227460282 + MER20 DNA MER1_type 49 219 0 929 272 79 63 chr1 15204858 15205299 -227459054 + MLT1L LTR MaLR 168 615 0 2256 119 0 6 chr1 15205409 15205720 -227458633 + AluSx SINE Alu 1 309 -3 1834 166 10 10 chr1 15206224 15206514 -227457839 - AluJb SINE Alu -16 296 7 359 268 50 42 chr1 15206574 15206724 -227457629 - LTR67 LTR ERVL -9 515 380 190 176 29 0 chr1 15207169 15207203 -227457150 + MIR SINE MIR 39 73 -189 2121 98 3 11 chr1 15208200 15208530 -227455823 - AluSx SINE Alu 0 328 1 628 291 133 65 chr1 15208550 15208904 -227455449 + MLT1J LTR MaLR 72 452 -1 311 309 9 36 chr1 15208908 15209018 -227455335 - MIR SINE MIR -74 188 82 21 0 0 0 chr1 15209026 15209047 -227455306 + AT_rich Low_complexity Low_complexity 1 21 0 228 300 8 46 chr1 15209686 15209816 -227454537 + LTR67 LTR ERVL 424 548 -9 416 314 108 5 chr1 15210706 15210900 -227453453 + MIR SINE MIR 48 261 -1 757 243 10 20 chr1 15211379 15211581 -227452772 - MER20 DNA MER1_type -3 216 17 2153 130 7 3 chr1 15211583 15211883 -227452470 - AluSx SINE Alu -11 301 1 2322 93 3 3 chr1 15212023 15212334 -227452019 + AluY SINE Alu 1 311 0 2695 171 20 22 chr1 15212952 15213292 -227451061 - L1MB7 LINE L1 -16 6168 5828 1974 156 0 10 chr1 15213292 15213587 -227450766 - AluJb SINE Alu -19 293 2 2695 171 20 22 chr1 15213587 15213801 -227450552 - L1MB7 LINE L1 -356 5828 5615 333 179 0 15 chr1 15214812 15214879 -227449474 - MLT1I LTR MaLR -9 400 335 2014 132 30 10 chr1 15214929 15215053 -227449300 + AluJb SINE Alu 3 123 -189 213 39 0 0 chr1 15215053 15215079 -227449274 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2014 132 30 10 chr1 15215079 15215258 -227449095 + AluJb SINE Alu 123 312 0 2481 76 0 22 chr1 15215273 15215590 -227448763 + AluY SINE Alu 1 310 -1 727 270 51 6 chr1 15215864 15216085 -227448268 + MIR SINE MIR 8 238 -24 662 351 52 4 chr1 15216104 15216335 -227448018 - MIR SINE MIR 0 262 21 2416 93 0 0 chr1 15216646 15216956 -227447397 + AluSq SINE Alu 1 310 -3 269 258 124 0 chr1 15217499 15217588 -227446765 - L2 LINE L2 -29 3284 3185 526 246 190 33 chr1 15217996 15218301 -227446052 - L2 LINE L2 -124 3189 2837 2298 140 35 33 chr1 15218745 15219299 -227445054 - MLT2A2 LTR ERVL 0 554 1 198 292 0 56 chr1 15219308 15219331 -227445022 - MIR SINE MIR -92 170 147 511 190 159 82 chr1 15219331 15219526 -227444827 - MER63A DNA MER1_type 0 210 1 198 292 0 56 chr1 15219526 15219574 -227444779 - MIR SINE MIR -115 147 103 895 271 31 31 chr1 15220350 15220605 -227443748 - MIR SINE MIR 0 262 8 299 245 21 53 chr1 15220766 15220860 -227443493 + L2 LINE L2 2570 2660 -654 237 265 96 100 chr1 15220954 15221015 -227443338 + L2 LINE L2 2832 2892 -380 2413 98 0 0 chr1 15221015 15221311 -227443042 - AluSc SINE Alu -13 296 1 237 265 96 100 chr1 15221311 15221509 -227442844 + L2 LINE L2 2892 3090 -182 538 174 18 0 chr1 15221592 15221701 -227442652 - L1MB5 LINE L1 -343 5831 5721 383 257 48 38 chr1 15221743 15221848 -227442505 + L2 LINE L2 3208 3313 0 1694 170 11 0 chr1 15223016 15223286 -227441067 + AluSx SINE Alu 1 273 -39 781 103 8 0 chr1 15223441 15223567 -227440786 + L1MB7 LINE L1 6031 6157 -27 2324 106 3 31 chr1 15223696 15224017 -227440336 + AluSp SINE Alu 2 313 0 235 167 185 0 chr1 15224156 15224210 -227440143 - L2 LINE L2 -5 3267 3204 324 0 0 0 chr1 15224210 15224246 -227440107 + (T)n Simple_repeat Simple_repeat 1 36 0 926 191 35 6 chr1 15225823 15225996 -227438357 + MER45A DNA AcHobo 1 178 0 507 278 99 38 chr1 15226399 15226611 -227437742 - MIR SINE MIR -2 260 36 * 691 271 24 34 chr1 15226564 15226771 -227437582 + MIR SINE MIR 8 212 -50 230 263 137 21 chr1 15226825 15226920 -227437433 - MIR SINE MIR -156 106 1 637 308 68 30 chr1 15227899 15228136 -227436217 - MIR SINE MIR -1 261 16 545 250 0 0 chr1 15228267 15228375 -227435978 - MIR SINE MIR -71 191 84 261 246 14 0 chr1 15228839 15228908 -227435445 + MLT1K LTR MaLR 509 578 -10 2103 134 0 0 chr1 15229240 15229530 -227434823 - AluJb SINE Alu -22 290 1 1504 245 15 18 chr1 15229628 15230024 -227434329 + MLT2C1 LTR ERVL 3 397 0 446 296 132 31 chr1 15230098 15230514 -227433839 + L2 LINE L2 2812 3269 -3 2316 118 0 3 chr1 15231429 15231742 -227432611 - AluSx SINE Alu 0 312 1 538 254 146 11 chr1 15231887 15232072 -227432281 - MIR SINE MIR 0 262 53 182 204 61 41 chr1 15232170 15232219 -227432134 - MIR SINE MIR 0 262 213 519 79 124 56 chr1 15232227 15232316 -227432037 - AluJ/FLAM SINE Alu -216 96 2 2558 62 0 0 chr1 15232660 15232966 -227431387 - AluY SINE Alu -5 306 1 581 271 7 7 chr1 15233394 15233545 -227430808 - MIR SINE MIR -48 214 64 305 297 210 31 chr1 15233577 15233867 -227430486 - L2 LINE L2 -62 3251 2910 318 239 119 18 chr1 15233938 15234047 -227430306 + MIR SINE MIR 143 262 0 620 251 146 55 chr1 15234756 15235271 -227429082 + MLT1H1 LTR MaLR 3 539 -16 1434 187 86 52 chr1 15235430 15235837 -227428516 + MER72 LTR ERV1 1 402 -269 * 3043 108 7 0 chr1 15235836 15236270 -227428083 + MER41B LTR ERV1 19 455 -180 340 296 126 13 chr1 15236305 15236562 -227427791 - L2 LINE L2 -297 3016 2740 200 296 185 22 chr1 15236575 15236710 -227427643 + MIR SINE MIR 10 166 -96 2104 65 47 33 chr1 15236711 15237023 -227427330 + AluY SINE Alu 1 316 0 1583 181 26 42 chr1 15237051 15237360 -227426993 - AluJo SINE Alu -8 304 1 288 301 36 0 chr1 15237360 15237443 -227426910 + MIR SINE MIR 165 250 -12 2411 89 20 0 chr1 15237705 15238007 -227426346 + AluSx SINE Alu 3 310 -2 308 292 86 57 chr1 15238503 15238712 -227425641 + MIR SINE MIR 34 248 -14 250 257 48 38 chr1 15238800 15238905 -227425448 + MIR SINE MIR 106 211 -51 254 266 43 21 chr1 15238953 15239047 -227425306 + L2 LINE L2 3101 3196 -76 1971 142 0 44 chr1 15239222 15239538 -227424815 + AluJo SINE Alu 1 302 -10 293 311 92 0 chr1 15239674 15239793 -227424560 - MIR SINE MIR -77 185 56 1996 129 0 7 chr1 15241527 15241807 -227422546 - AluJo SINE Alu -34 278 1 2298 98 7 3 chr1 15242157 15242464 -227421889 - AluSx SINE Alu -4 308 1 847 304 140 29 chr1 15243489 15244272 -227420081 + L2 LINE L2 2394 3271 -1 2273 101 3 0 chr1 15244353 15244649 -227419704 + AluSq SINE Alu 1 297 -16 434 289 142 26 chr1 15245069 15245301 -227419052 + MER102a DNA MER1_type 61 319 -11 252 286 104 52 chr1 15245567 15245721 -227418632 + MIR SINE MIR 101 262 0 280 362 46 7 chr1 15247101 15247253 -227417100 - MIR SINE MIR 0 262 105 269 302 135 0 chr1 15247312 15247408 -227416945 + L2 LINE L2 3147 3255 -17 690 288 43 23 chr1 15247728 15248027 -227416326 + LTR16C LTR ERVL 187 491 0 878 267 157 5 chr1 15248127 15248509 -227415844 + LTR16B LTR ERVL 25 464 0 1235 192 14 0 chr1 15248713 15248927 -227415426 + MER20 DNA MER1_type 1 217 -2 431 335 85 16 chr1 15249015 15249203 -227415150 + MIR SINE MIR 48 248 -14 619 239 52 143 chr1 15249371 15249798 -227414555 - L2 LINE L2 0 3313 2926 2218 126 3 0 chr1 15249958 15250267 -227414086 + AluSx SINE Alu 1 310 -2 2560 71 0 0 chr1 15251254 15251563 -227412790 - AluY SINE Alu -2 309 1 566 275 94 79 chr1 15252480 15252961 -227411392 - L2 LINE L2 -3 3269 2792 1161 215 0 5 chr1 15252961 15253184 -227411169 + MER58A DNA MER1_type 1 222 -2 566 275 94 79 chr1 15253184 15253202 -227411151 - L2 LINE L2 -480 2792 2776 955 152 0 0 chr1 15253203 15253335 -227411018 - FLAM_C SINE Alu -11 132 1 369 265 109 14 chr1 15253335 15253482 -227410871 - L2 LINE L2 -536 2778 2618 205 310 14 0 chr1 15253612 15253683 -227410670 + MIR SINE MIR 184 255 -7 393 231 68 105 chr1 15253724 15254048 -227410305 - LTR16A1 LTR ERVL 0 457 146 213 207 12 146 chr1 15254159 15254241 -227410112 - MIR3 SINE MIR -23 185 115 1113 52 0 29 chr1 15254449 15254585 -227409768 - AluY SINE Alu -179 132 1 256 309 30 60 chr1 15255882 15256050 -227408303 + MIR3 SINE MIR 1 163 -45 1050 152 13 89 chr1 15256114 15256351 -227408002 + MER20 DNA MER1_type 1 219 0 772 299 69 10 chr1 15257734 15258038 -227406315 + L2 LINE L2 2452 2773 -541 311 212 0 35 chr1 15258064 15258149 -227406204 + MER53 DNA DNA 4 85 -104 243 169 0 62 chr1 15258093 15258158 -227406195 - MER53 DNA DNA -22 167 107 * 1942 130 27 7 chr1 15258299 15258592 -227405761 - AluSp SINE Alu -14 299 1 1074 292 122 11 chr1 15258637 15259089 -227405264 + L2 LINE L2 2812 3313 0 461 282 118 40 chr1 15259277 15259522 -227404831 + MIR SINE MIR 2 256 -6 268 286 44 11 chr1 15260291 15260382 -227403971 + MLT1G LTR MaLR 497 590 0 247 140 16 8 chr1 15260860 15260921 -227403432 + MLT1I LTR MaLR 73 120 -289 280 280 51 28 chr1 15261098 15261219 -227403134 + MLT1G1 LTR MaLR 431 595 0 2226 165 5 30 chr1 15261260 15261570 -227402783 - MLT1B LTR MaLR 0 390 91 2137 106 10 3 chr1 15261570 15261862 -227402491 + AluSp SINE Alu 1 294 -19 2226 165 5 30 chr1 15261862 15261951 -227402402 - MLT1B LTR MaLR -299 91 1 445 290 162 53 chr1 15261951 15262464 -227401889 - MLT1K LTR MaLR -19 569 1 271 350 28 56 chr1 15262563 15262743 -227401610 + MIR SINE MIR 37 211 -51 369 240 163 56 chr1 15262809 15263097 -227401256 + LTR16A LTR ERVL 73 384 -66 796 309 8 27 chr1 15263247 15263503 -227400850 + MIR SINE MIR 2 252 -10 352 327 36 0 chr1 15263510 15263620 -227400733 - L2 LINE L2 -32 3240 3127 286 302 35 26 chr1 15264042 15264158 -227400195 - MIR3 SINE MIR 0 208 92 291 248 65 105 chr1 15264242 15264395 -227399958 + MIR3 SINE MIR 22 168 -40 2647 254 115 34 chr1 15264397 15265803 -227398550 - L2 LINE L2 -12 3301 1789 230 248 0 105 chr1 15265755 15265860 -227398493 + MIR SINE MIR 162 255 -7 * 2115 92 3 0 chr1 15265994 15266319 -227398034 - AluSp SINE Alu 0 326 1 2363 84 0 0 chr1 15266858 15267167 -227397186 - AluY SINE Alu 0 311 3 365 247 99 103 chr1 15267185 15267408 -227396945 - MIR SINE MIR -3 259 38 210 300 0 62 chr1 15267598 15267678 -227396675 + MIR SINE MIR 134 208 -54 485 291 136 10 chr1 15268370 15268569 -227395784 - MIR SINE MIR 0 262 39 417 272 98 54 chr1 15268560 15268744 -227395609 + MIR SINE MIR 21 212 -50 * 40 49 0 0 chr1 15269985 15270046 -227394307 + AT_rich Low_complexity Low_complexity 1 61 0 405 0 0 0 chr1 15270078 15270123 -227394230 + (TA)n Simple_repeat Simple_repeat 1 45 0 315 313 20 60 chr1 15270178 15270328 -227394025 + MIR SINE MIR 35 178 -84 315 239 109 0 chr1 15270730 15270822 -227393531 - MIR SINE MIR -112 150 49 185 231 0 0 chr1 15270833 15270872 -227393481 - L2 LINE L2 -15 3257 3219 220 296 136 27 chr1 15271002 15271296 -227393057 + L2 LINE L2 2805 3130 -183 183 200 12 150 chr1 15271404 15271484 -227392869 + L2 LINE L2 3196 3264 -49 437 189 47 28 chr1 15271709 15271815 -227392538 - MLT1K LTR MaLR -144 444 337 718 247 37 16 chr1 15271847 15272037 -227392316 + MLT1K LTR MaLR 107 300 -288 195 238 63 48 chr1 15272133 15272196 -227392157 + L2 LINE L2 3122 3185 -87 701 269 25 49 chr1 15272427 15272672 -227391681 + MLT1K LTR MaLR 12 250 -338 2196 92 0 0 chr1 15272931 15273223 -227391130 + AluSq SINE Alu 1 292 -21 2588 109 18 90 chr1 15274330 15274712 -227389641 + MSTB LTR MaLR 2 347 -79 1695 151 44 0 chr1 15274712 15274984 -227389369 + AluJb SINE Alu 1 284 -28 2588 109 18 90 chr1 15274984 15275058 -227389295 + MSTB LTR MaLR 347 425 -1 260 284 84 32 chr1 15275515 15275610 -227388743 + MIR SINE MIR 42 141 -121 279 0 0 0 chr1 15276364 15276395 -227387958 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4833 40 0 3 chr1 15276395 15276968 -227387385 - L1PA4 LINE L1 -18 6137 5567 326 295 58 26 chr1 15278039 15278195 -227386158 - MER117 DNA MER1_type -31 166 6 2172 111 0 0 chr1 15278272 15278579 -227385774 + AluSx SINE Alu 1 307 -5 182 246 49 16 chr1 15279418 15279479 -227384874 + MER5A DNA MER1_type 4 66 -123 2151 105 0 3 chr1 15280137 15280432 -227383921 + AluSx SINE Alu 1 294 -18 477 246 51 34 chr1 15280518 15280636 -227383717 + L2 LINE L2 3148 3267 -5 884 187 14 51 chr1 15280807 15281021 -227383332 + MER3 DNA MER1_type 4 209 0 271 314 51 63 chr1 15281070 15281245 -227383108 + MIR SINE MIR 48 220 -42 188 210 111 62 chr1 15281741 15281822 -227382531 + MIR SINE MIR 91 175 -87 1006 226 122 23 chr1 15281901 15282209 -227382144 - MLT1A1 LTR MaLR -8 356 19 2595 228 57 5 chr1 15282434 15283067 -227381286 - L1MB7 LINE L1 -9 6175 5510 454 179 143 43 chr1 15285103 15285243 -227379110 + MLT1K LTR MaLR 419 572 -16 353 243 117 9 chr1 15285757 15285868 -227378485 + MIR3 SINE MIR 34 156 -52 2026 121 17 0 chr1 15285917 15286215 -227378138 - AluSx SINE Alu -9 303 1 382 301 176 19 chr1 15286380 15286596 -227377757 + MIR SINE MIR 11 260 -2 182 245 38 19 chr1 15286736 15286789 -227377564 + MIR SINE MIR 95 148 -60 32 0 0 0 chr1 15286878 15286910 -227377443 + AT_rich Low_complexity Low_complexity 1 32 0 336 102 0 0 chr1 15287630 15287679 -227376674 + (T)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr1 15288041 15288062 -227376291 + AT_rich Low_complexity Low_complexity 1 21 0 805 145 0 0 chr1 15288062 15288179 -227376174 - FLAM_C SINE Alu -16 117 1 804 321 4 17 chr1 15288675 15288912 -227375441 + MIR SINE MIR 14 247 -15 1241 217 51 65 chr1 15288915 15289329 -227375024 - MLT1I LTR MaLR 0 409 2 2337 26 0 0 chr1 15289882 15290155 -227374198 - L1PA4 LINE L1 -1 6154 5882 204 260 41 0 chr1 15292450 15292523 -227371830 + CT-rich Low_complexity Low_complexity 4 79 0 346 261 63 18 chr1 15292988 15293099 -227371254 + MIR SINE MIR 69 184 -78 420 311 16 0 chr1 15293300 15293422 -227370931 + MIR3 SINE MIR 36 159 -49 209 263 18 35 chr1 15293818 15293875 -227370478 + MIR SINE MIR 27 82 -180 1838 92 8 0 chr1 15293880 15294130 -227370223 + AluSx SINE Alu 48 299 -13 379 271 10 0 chr1 15294130 15294226 -227370127 + MIR SINE MIR 153 249 -13 204 125 0 0 chr1 15294231 15294263 -227370090 + (ATG)n Simple_repeat Simple_repeat 1 32 0 284 235 25 12 chr1 15294264 15294345 -227370008 + GA-rich Low_complexity Low_complexity 1 82 0 2224 92 3 7 chr1 15295156 15295460 -227368893 + AluSq SINE Alu 2 304 -9 677 213 41 24 chr1 15296516 15296685 -227367668 - HERVL74 LTR ERVL -4115 1570 1399 209 97 0 0 chr1 15296704 15296735 -227367618 + L2 LINE L2 3283 3313 0 267 31 0 0 chr1 15297100 15297132 -227367221 + (TG)n Simple_repeat Simple_repeat 2 33 0 610 304 0 0 chr1 15297326 15297494 -227366859 + MER117 DNA MER1_type 1 168 -29 225 362 24 16 chr1 15298736 15298863 -227365490 - MIR SINE MIR -63 145 18 2217 116 42 33 chr1 15299074 15299435 -227364918 + THE1B LTR MaLR 1 364 0 1886 160 67 81 chr1 15301104 15301329 -227363024 - MER66B LTR ERV1 0 486 259 2166 99 0 0 chr1 15301329 15301622 -227362731 - AluSg SINE Alu -11 299 7 1886 160 67 81 chr1 15301622 15301889 -227362464 - MER66B LTR ERV1 -227 259 1 283 116 0 5 chr1 15302309 15302364 -227361989 - Alu SINE Alu -262 40 1 211 323 16 0 chr1 15302365 15302427 -227361926 - MIR SINE MIR -84 178 116 329 289 221 14 chr1 15302577 15302785 -227361568 + MIR SINE MIR 1 251 -11 292 256 13 26 chr1 15303128 15303206 -227361147 + L2 LINE L2 3150 3226 -46 213 94 0 0 chr1 15303226 15303258 -227361095 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1830 160 72 19 chr1 15303404 15303779 -227360574 - L1MB7 LINE L1 -5 6179 5785 2147 205 29 86 chr1 15303790 15304419 -227359934 - L1MB7 LINE L1 -1539 4607 4016 459 0 0 0 chr1 15304419 15304470 -227359883 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2147 205 29 86 chr1 15304470 15304503 -227359850 - L1MB7 LINE L1 -2130 4016 3983 1923 227 38 33 chr1 15304484 15305093 -227359260 - L1MB7 LINE L1 -2537 3609 2998 * 397 281 38 19 chr1 15305204 15305364 -227358989 + MER103 DNA DNA 2 164 -2 655 189 106 76 chr1 15305390 15305654 -227358699 + ORSL DNA AcHobo 1 272 -3 481 128 39 39 chr1 15307000 15307179 -227357174 + (CA)n Simple_repeat Simple_repeat 2 180 0 735 283 139 28 chr1 15307227 15307651 -227356702 + L2 LINE L2 2842 3312 -1 324 292 118 17 chr1 15308435 15308613 -227355740 - L2 LINE L2 0 3313 3118 199 154 77 0 chr1 15310367 15310406 -227353947 + L2 LINE L2 3261 3302 -11 289 102 34 17 chr1 15310834 15310893 -227353460 + CT-rich Low_complexity Low_complexity 3 62 0 225 114 0 0 chr1 15311898 15311933 -227352420 - MIR SINE MIR -117 145 111 286 165 10 155 chr1 15311938 15311970 -227352383 - Charlie8 DNA MER1_type -176 165 130 1500 153 67 8 chr1 15311970 15312238 -227352115 + AluSx SINE Alu 1 284 -28 286 165 10 155 chr1 15312238 15312302 -227352051 - Charlie8 DNA MER1_type -211 130 83 188 188 16 0 chr1 15512479 15512543 -227151810 + G-rich Low_complexity Low_complexity 5 69 0 182 170 0 21 chr1 15512914 15512961 -227151392 + G-rich Low_complexity Low_complexity 2 47 0 198 118 0 0 chr1 15513093 15513127 -227151226 + (T)n Simple_repeat Simple_repeat 1 34 0 839 124 39 0 chr1 15513197 15513326 -227151027 - AluSq/x SINE Alu -179 134 1 2528 63 0 22 chr1 15513354 15513669 -227150684 + AluY SINE Alu 1 308 -3 435 182 83 21 chr1 15513754 15513889 -227150464 - MIR3 SINE MIR -48 160 23 2250 71 46 0 chr1 15514142 15514425 -227149928 + AluSg SINE Alu 1 296 -14 2320 54 4 11 chr1 15514537 15514815 -227149538 - AluY SINE Alu -35 276 1 452 264 40 13 chr1 15514818 15514991 -227149362 - L1M4 LINE L1 -1548 4598 4412 418 266 22 14 chr1 15515080 15515219 -227149134 + MIR SINE MIR 5 144 -118 350 120 0 0 chr1 15515233 15515283 -227149070 + MER3 DNA MER1_type 41 90 -119 * 372 64 0 0 chr1 15515240 15515287 -227149066 - Charlie5 DNA MER1_type -2403 209 163 934 265 42 0 chr1 15515627 15515865 -227148488 + MIR SINE MIR 7 254 -8 235 189 0 0 chr1 15515928 15515979 -227148374 - MIR SINE MIR -116 92 42 673 173 0 31 chr1 15516037 15516164 -227148189 + FLAM_C SINE Alu 2 124 -9 2469 77 10 0 chr1 15516244 15516542 -227147811 + AluSc SINE Alu 1 301 -8 2280 118 0 0 chr1 15516574 15516870 -227147483 + AluSq SINE Alu 1 296 -17 503 231 9 0 chr1 15517221 15517329 -227147024 + MER58A DNA MER1_type 37 145 0 1618 170 35 38 chr1 15517330 15517619 -227146734 - AluJb SINE Alu -24 288 1 382 211 0 0 chr1 15517670 15517741 -227146612 + MER58A DNA MER1_type 151 221 -3 921 276 176 52 chr1 15517875 15518052 -227146301 - L2 LINE L2 -9 3263 3109 2427 96 0 3 chr1 15518052 15518366 -227145987 + AluSq SINE Alu 1 313 0 921 276 176 52 chr1 15518366 15518662 -227145691 - L2 LINE L2 -163 3109 2851 1878 139 38 0 chr1 15518662 15518949 -227145404 - AluJb SINE Alu -14 298 1 921 276 176 52 chr1 15518949 15519277 -227145076 - L2 LINE L2 -421 2851 2565 2010 148 7 13 chr1 15519277 15519587 -227144766 + AluSx SINE Alu 1 308 -4 921 276 176 52 chr1 15519587 15519652 -227144701 - L2 LINE L2 -707 2565 2258 1256 149 10 5 chr1 15520396 15520591 -227143762 - AluJb SINE Alu -116 196 1 2333 109 3 0 chr1 15520709 15521013 -227143340 - AluSp SINE Alu -8 305 1 2118 137 0 10 chr1 15521018 15521325 -227143028 - AluSx SINE Alu -8 304 1 412 162 0 0 chr1 15521547 15521615 -227142738 + AluSg/x SINE Alu 208 275 -37 606 129 0 20 chr1 15521767 15521868 -227142485 - AluSx SINE Alu -8 304 206 2407 91 3 0 chr1 15521868 15522164 -227142189 - AluSc SINE Alu -8 301 5 1542 140 0 0 chr1 15522167 15522381 -227141972 - AluSx SINE Alu -98 214 1 1280 139 42 28 chr1 15522489 15522704 -227141649 - AluJo SINE Alu -10 302 85 189 308 169 41 chr1 15522716 15522888 -227141465 - L2 LINE L2 -1686 1628 1435 548 145 0 0 chr1 15522942 15523025 -227141328 + AluJ/FLAM SINE Alu 2 84 -228 1767 168 24 7 chr1 15523124 15523421 -227140932 - AluJo SINE Alu -6 306 5 2101 122 7 10 chr1 15523520 15523815 -227140538 - AluSx SINE Alu -18 294 1 2411 87 0 19 chr1 15524400 15524709 -227139644 + AluSq SINE Alu 1 303 -10 2282 79 7 20 chr1 15525361 15525664 -227138689 + AluSc SINE Alu 1 299 -10 293 304 179 0 chr1 15526132 15526244 -227138109 + MIR SINE MIR 16 147 -61 309 133 33 0 chr1 15526287 15526347 -227138006 - AluSp/q SINE Alu 0 303 242 2235 93 0 0 chr1 15526395 15526673 -227137680 + AluSx SINE Alu 35 312 0 2150 133 0 3 chr1 15526674 15526967 -227137386 + AluSg SINE Alu 1 292 -18 2292 101 3 0 chr1 15526969 15527267 -227137086 + AluSg SINE Alu 3 301 -9 499 176 38 114 chr1 15527268 15527361 -227136992 - MER58 DNA MER1_type -147 194 124 2080 123 7 42 chr1 15527361 15527528 -227136825 - AluSx SINE Alu -10 302 149 2611 57 0 0 chr1 15527528 15527827 -227136526 - AluY SINE Alu -12 299 1 2080 123 7 42 chr1 15527827 15527967 -227136386 - AluSx SINE Alu -163 149 6 499 176 38 114 chr1 15527967 15528083 -227136270 - MER58 DNA MER1_type -217 124 1 2165 96 7 7 chr1 15528118 15528409 -227135944 - AluSc SINE Alu -18 291 1 934 160 65 45 chr1 15528433 15528633 -227135720 - AluJo SINE Alu -5 307 104 358 264 57 19 chr1 15528635 15528741 -227135612 + AluSg/x SINE Alu 135 244 -56 1068 191 36 27 chr1 15528773 15528993 -227135360 + AluJo SINE Alu 85 306 -6 426 73 0 0 chr1 15529116 15529171 -227135182 - AluJo/FRAM SINE Alu -47 265 211 294 170 0 0 chr1 15529171 15529224 -227135129 + Alu SINE Alu 245 297 -4 244 282 164 9 chr1 15529225 15529335 -227135018 + MIR SINE MIR 20 146 -62 2562 60 0 10 chr1 15529616 15529914 -227134439 + AluSx SINE Alu 1 295 -17 227 327 39 32 chr1 15529994 15530150 -227134203 + L2 LINE L2 2881 3037 -276 2558 64 0 0 chr1 15530431 15530729 -227133624 - AluY SINE Alu -13 298 1 326 289 11 11 chr1 15530784 15530874 -227133479 - L3 LINE CR1 -9 1568 1479 1990 162 0 0 chr1 15530875 15531171 -227133182 - AluJb SINE Alu -16 296 1 232 286 268 0 chr1 15531580 15531692 -227132661 - MIR SINE MIR -89 173 32 1493 174 98 21 chr1 15531739 15532026 -227132327 + AluJo SINE Alu 1 309 -3 2446 106 0 0 chr1 15532076 15532388 -227131965 + AluSx SINE Alu 1 312 0 2070 136 0 7 chr1 15532900 15533201 -227131152 + AluSx SINE Alu 1 299 -13 955 104 0 0 chr1 15533335 15533460 -227130893 + AluSc SINE Alu 170 294 -15 1865 160 0 0 chr1 15533488 15533795 -227130558 - AluJb SINE Alu 0 312 1 902 96 80 0 chr1 15533869 15533994 -227130359 + AluSq/x SINE Alu 1 135 -178 192 77 0 0 chr1 15534090 15534116 -227130237 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1222 153 213 24 chr1 15534416 15534686 -227129667 + AluSx SINE Alu 1 312 0 2444 78 0 13 chr1 15534741 15535048 -227129305 + AluY SINE Alu 1 303 -8 360 182 192 30 chr1 15535055 15535154 -227129199 - FLAM_C SINE Alu -18 115 1 2201 121 10 0 chr1 15535179 15535469 -227128884 + AluSx SINE Alu 1 293 -19 359 217 217 39 chr1 15535524 15535653 -227128700 - L2 LINE L2 -1 3312 3161 2096 110 28 7 chr1 15535703 15535993 -227128360 + AluSx SINE Alu 3 298 -14 1845 156 28 3 chr1 15536101 15536389 -227127964 - AluJo SINE Alu -17 295 1 462 289 170 0 chr1 15536395 15536554 -227127799 + MER5A DNA MER1_type 4 189 0 2140 98 7 36 chr1 15536586 15536891 -227127462 + AluSq SINE Alu 1 296 -17 1834 190 68 29 chr1 15537393 15537835 -227126518 - LTR2B LTR ERV1 0 490 32 1930 148 0 33 chr1 15537880 15538184 -227126169 + AluJb SINE Alu 1 294 -18 304 131 16 0 chr1 15538185 15538246 -227126107 + L1MB7 LINE L1 6123 6184 0 2269 117 3 0 chr1 15538267 15538565 -227125788 + AluSx SINE Alu 2 300 -12 244 258 16 0 chr1 15538624 15538686 -227125667 - L2 LINE L2 0 3272 3210 362 253 268 20 chr1 15538728 15539120 -227125233 + L2 LINE L2 819 1307 -2007 225 259 121 9 chr1 15539923 15540039 -227124314 + MIR3 SINE MIR 33 161 -47 195 290 43 11 chr1 15540257 15540350 -227124003 + L2 LINE L2 2956 3051 -221 231 114 0 0 chr1 15540474 15540509 -227123844 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2462 85 3 0 chr1 15540943 15541249 -227123104 - AluSp SINE Alu -6 307 1 2525 66 7 0 chr1 15541253 15541558 -227122795 - AluSp SINE Alu -6 307 1 1148 68 0 0 chr1 15541562 15541695 -227122658 - AluSq/x SINE Alu -179 133 1 220 267 139 0 chr1 15541741 15541827 -227122526 - MIR SINE MIR -78 130 33 2404 84 3 3 chr1 15542309 15542606 -227121747 + AluSc SINE Alu 1 297 -12 2521 67 0 0 chr1 15542607 15542907 -227121446 + AluY SINE Alu 1 300 -11 816 198 0 6 chr1 15542907 15543069 -227121284 - L1MD3 LINE L1 -110 7885 7725 212 326 22 11 chr1 15543244 15543336 -227121017 + MIR SINE MIR 111 203 -59 799 152 8 0 chr1 15543640 15543772 -227120581 - FLAM_C SINE Alu 0 133 1 209 195 24 0 chr1 15543819 15543860 -227120493 + C-rich Low_complexity Low_complexity 2 43 0 791 152 71 63 chr1 15544010 15544132 -227120221 - LTR37A LTR ERV1 -12 414 294 2352 94 0 17 chr1 15544132 15544429 -227119924 + AluSx SINE Alu 1 292 -20 791 152 71 63 chr1 15544429 15544682 -227119671 - LTR37A LTR ERV1 -132 294 1 871 135 0 0 chr1 15544860 15544993 -227119360 + FLAM_C SINE Alu 1 133 0 1920 158 3 14 chr1 15545013 15545310 -227119043 + AluJb SINE Alu 1 294 -18 219 268 116 14 chr1 15545473 15545611 -227118742 + MIR SINE MIR 80 231 -31 1101 160 0 66 chr1 15546073 15546247 -227118106 - AluSg/x SINE Alu 0 302 144 2547 65 13 7 chr1 15546247 15546557 -227117796 - AluSp SINE Alu -1 312 1 1101 160 0 66 chr1 15546557 15546614 -227117739 - AluSg/x SINE Alu -158 144 85 2466 72 0 57 chr1 15547263 15547594 -227116759 - AluSx SINE Alu 0 312 1 594 143 87 0 chr1 15547993 15548119 -227116234 - L1MB3 LINE L1 -3 6180 6044 1327 129 4 71 chr1 15548119 15548271 -227116082 - AluSg/x SINE Alu -28 282 121 189 0 0 0 chr1 15548271 15548292 -227116061 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2411 57 0 0 chr1 15548292 15548574 -227115779 - AluY SINE Alu -29 282 1 1327 129 4 71 chr1 15548574 15548645 -227115708 - AluSg/x SINE Alu -187 123 73 1692 138 127 0 chr1 15548653 15548921 -227115432 - AluJb SINE Alu -10 302 1 1933 152 28 33 chr1 15548921 15549052 -227115301 - L1MB3 LINE L1 -121 6062 5932 474 305 13 63 chr1 15549052 15549157 -227115196 - L1PA16 LINE L1 -241 5925 5816 2288 123 0 0 chr1 15549157 15549458 -227114895 - AluSg SINE Alu -9 301 1 2342 86 0 26 chr1 15549458 15549762 -227114591 - AluSx SINE Alu -14 298 3 474 305 13 63 chr1 15549762 15549957 -227114396 - L1PA16 LINE L1 -348 5818 5639 335 289 48 0 chr1 15550271 15550354 -227113999 - L1MC4 LINE L1 -1340 6702 6616 311 360 0 0 chr1 15550308 15550397 -227113956 + L1MC4 LINE L1 6614 6702 -1340 * 304 296 34 11 chr1 15550334 15550422 -227113931 - L1MCa LINE L1 -4359 2067 1978 * 2387 100 3 0 chr1 15550432 15550741 -227113612 - AluSp SINE Alu -3 310 1 649 237 149 14 chr1 15550888 15551103 -227113250 + MER90 LTR ERV1 370 613 -1 873 129 0 0 chr1 15551249 15551365 -227112988 + AluJo/FLAM SINE Alu 1 116 -196 1999 144 0 0 chr1 15551365 15551670 -227112683 - AluSq SINE Alu 0 305 1 2339 101 0 7 chr1 15551672 15551969 -227112384 - AluSc SINE Alu -14 295 1 225 0 0 0 chr1 15551989 15552014 -227112339 + (TA)n Simple_repeat Simple_repeat 1 25 0 2389 108 0 0 chr1 15552014 15552321 -227112032 - AluSg SINE Alu -3 307 1 204 320 136 0 chr1 15552347 15552450 -227111903 - MIR SINE MIR -72 136 20 1802 146 30 0 chr1 15552559 15552826 -227111527 - AluJb SINE Alu -14 298 24 1928 137 35 0 chr1 15552843 15553127 -227111226 - AluSx SINE Alu -17 295 2 2394 92 0 0 chr1 15554332 15554625 -227109728 - AluSx SINE Alu -19 293 1 2309 93 17 3 chr1 15554635 15554926 -227109427 - AluSq SINE Alu -18 295 1 2001 137 23 0 chr1 15555774 15556074 -227108279 - AluSx SINE Alu -5 307 1 2528 63 0 22 chr1 15556102 15556417 -227107936 + AluY SINE Alu 1 308 -3 435 182 83 21 chr1 15556502 15556637 -227107716 - MIR3 SINE MIR -48 160 23 1765 137 42 3 chr1 15556890 15557174 -227107179 + AluSg1 SINE Alu 1 295 -14 1243 140 0 0 chr1 15557560 15557731 -227106622 - AluJb SINE Alu -13 299 129 1238 133 0 0 chr1 15557839 15558005 -227106348 - AluJb SINE Alu -13 299 134 1891 150 21 7 chr1 15558005 15558291 -227106062 - AluJb SINE Alu -22 290 1 567 198 0 138 chr1 15558806 15558883 -227105470 - MER45A DNA AcHobo -1403 178 92 2017 134 17 3 chr1 15558883 15559174 -227105179 + AluSx SINE Alu 1 295 -17 567 198 0 138 chr1 15559174 15559187 -227105166 - MER45A DNA AcHobo -1489 92 79 1624 158 28 54 chr1 15559187 15559504 -227104849 + AluJo SINE Alu 1 309 -3 567 198 0 138 chr1 15559504 15559579 -227104774 - MER45A DNA AcHobo -1502 79 35 2212 125 6 10 chr1 15559775 15560086 -227104267 + AluSx SINE Alu 1 310 -2 2277 95 7 3 chr1 15560142 15560436 -227103917 + AluSx SINE Alu 1 295 -17 2377 109 0 3 chr1 15560437 15560741 -227103612 + AluSp SINE Alu 2 304 -9 252 314 71 35 chr1 15560749 15560918 -227103435 + L2 LINE L2 2897 3071 -201 910 155 7 0 chr1 15560953 15561095 -227103258 - FLAM_C SINE Alu 0 143 1 671 266 102 71 chr1 15561243 15561505 -227102848 + MLT1K LTR MaLR 180 458 -130 2334 90 10 0 chr1 15561505 15561805 -227102548 + AluSq SINE Alu 1 303 -10 671 266 102 71 chr1 15561805 15561906 -227102447 + MLT1K LTR MaLR 458 554 -34 2370 88 3 34 chr1 15562475 15562795 -227101558 - AluSg SINE Alu 0 310 1 236 255 0 98 chr1 15562818 15562920 -227101433 + L2 LINE L2 3132 3223 -49 195 326 106 64 chr1 15562937 15563078 -227101275 + MIR SINE MIR 18 164 -98 631 123 36 72 chr1 15563104 15563242 -227101111 - FLAM_C SINE Alu 0 133 1 1225 167 100 154 chr1 15563256 15563823 -227100530 + MER21A LTR ERV1 16 612 -251 2233 114 0 0 chr1 15563823 15564122 -227100231 - AluSg SINE Alu -10 300 2 2566 39 0 13 chr1 15564131 15564441 -227099912 - AluY SINE Alu -5 306 1 1225 167 100 154 chr1 15564441 15564477 -227099876 + MER21A LTR ERV1 454 490 -373 1833 141 33 7 chr1 15565213 15565517 -227098836 - AluSx SINE Alu 0 312 1 259 115 0 49 chr1 15565640 15565677 -227098676 - L1MB1 LINE L1 -1 6167 6130 2311 86 3 3 chr1 15565677 15565979 -227098374 - AluSp SINE Alu -9 304 3 1867 106 84 0 chr1 15565981 15566254 -227098099 - AluSx SINE Alu -16 296 1 259 115 0 49 chr1 15566254 15566274 -227098079 - L1MB1 LINE L1 -39 6129 6110 1413 113 0 5 chr1 15566293 15566497 -227097856 + AluSq SINE Alu 2 204 -109 21 36 0 0 chr1 15566548 15566576 -227097777 + AT_rich Low_complexity Low_complexity 1 28 0 837 136 0 0 chr1 15566588 15566706 -227097647 - FLAM_C SINE Alu -25 118 1 258 317 246 7 chr1 15567181 15567323 -227097030 - MER5A DNA MER1_type 0 189 14 545 249 53 62 chr1 15567471 15567555 -227096798 + MIR SINE MIR 11 94 -168 1468 209 127 45 chr1 15567555 15567832 -227096521 + MLT1D LTR MaLR 1 254 -251 2066 141 3 0 chr1 15567832 15568138 -227096215 + AluSx SINE Alu 1 307 -5 2245 98 0 22 chr1 15568140 15568456 -227095897 + AluSg SINE Alu 1 309 -1 1468 209 127 45 chr1 15568456 15568639 -227095714 + MLT1D LTR MaLR 254 502 -3 545 249 53 62 chr1 15568639 15568779 -227095574 + MIR SINE MIR 94 233 -29 2073 144 0 6 chr1 15569131 15569444 -227094909 + AluSx SINE Alu 1 311 -1 2240 89 7 0 chr1 15569445 15569747 -227094606 + AluSc SINE Alu 1 304 -5 343 177 0 6 chr1 15569787 15569856 -227094497 - Alu SINE Alu -247 55 1 2322 106 0 0 chr1 15569872 15570183 -227094170 - AluSx SINE Alu -1 311 1 227 314 23 0 chr1 15570932 15571018 -227093335 - MIR SINE MIR -108 154 67 1948 138 7 3 chr1 15571195 15571499 -227092854 + AluSx SINE Alu 1 305 -7 245 316 72 36 chr1 15571512 15571651 -227092702 + L3b LINE CR1 1342 1485 -98 319 239 0 0 chr1 15572117 15572184 -227092169 + MIR SINE MIR 46 112 -96 1853 156 0 10 chr1 15572185 15572486 -227091867 + AluJo SINE Alu 1 298 -14 2124 109 7 0 chr1 15572486 15572778 -227091575 + AluSp SINE Alu 1 295 -18 2198 98 0 0 chr1 15572781 15573067 -227091286 + AluSx SINE Alu 1 286 -26 258 32 0 0 chr1 15573070 15573101 -227091252 + (CA)n Simple_repeat Simple_repeat 2 32 0 874 158 72 0 chr1 15573101 15573211 -227091142 + AluJb SINE Alu 132 257 -55 198 0 0 0 chr1 15573211 15573233 -227091120 + (CACTG)n Simple_repeat Simple_repeat 1 22 0 874 158 72 0 chr1 15573233 15573274 -227091079 + AluJb SINE Alu 257 294 -18 329 284 53 0 chr1 15573274 15573369 -227090984 + MER5A DNA MER1_type 66 165 -24 464 279 96 21 chr1 15575033 15575226 -227089127 - MIR SINE MIR -53 209 3 2241 96 3 3 chr1 15575439 15575742 -227088611 + AluSq SINE Alu 1 303 -10 1892 103 28 21 chr1 15576127 15576247 -227088106 + AluSx SINE Alu 10 128 -184 2155 122 0 0 chr1 15576247 15576551 -227087802 + AluSg1 SINE Alu 1 304 -5 1892 103 28 21 chr1 15576551 15576720 -227087633 + AluSx SINE Alu 128 301 -11 327 322 39 50 chr1 15577290 15577470 -227086883 - MIR SINE MIR -3 259 82 2314 101 0 0 chr1 15578252 15578560 -227085793 - AluSx SINE Alu -4 308 1 2298 70 13 0 chr1 15578565 15578866 -227085487 - AluSx SINE Alu -7 305 1 291 305 121 0 chr1 15579016 15579157 -227085196 + MIR SINE MIR 35 192 -70 22 0 0 0 chr1 15579961 15579983 -227084370 + GC_rich Low_complexity Low_complexity 1 22 0 205 286 0 0 chr1 15580025 15580088 -227084265 + C-rich Low_complexity Low_complexity 81 143 0 25 0 0 0 chr1 15580177 15580202 -227084151 + GC_rich Low_complexity Low_complexity 1 25 0 299 165 66 44 chr1 15580257 15580348 -227084005 + G-rich Low_complexity Low_complexity 2 94 0 440 274 114 17 chr1 15580521 15580696 -227083657 + MIR SINE MIR 63 254 -8 278 313 93 63 chr1 15581354 15581530 -227082823 - MIR SINE MIR -49 213 35 479 302 124 48 chr1 15582455 15582826 -227081527 - L2 LINE L2 -5 3308 2910 362 241 118 52 chr1 15583000 15583230 -227081123 + MIR3 SINE MIR 5 243 -19 327 172 65 11 chr1 15583557 15583650 -227080703 + MLT1K LTR MaLR 388 485 -103 318 188 29 0 chr1 15583684 15583753 -227080600 - Alu SINE Alu 0 301 231 2437 70 0 16 chr1 15583759 15584104 -227080249 - AluY SINE Alu 0 340 1 2297 100 0 0 chr1 15584193 15584492 -227079861 + AluSq SINE Alu 1 299 -14 1158 99 12 0 chr1 15584499 15584660 -227079693 + AluSg/x SINE Alu 140 302 -8 2040 111 0 0 chr1 15585477 15585756 -227078597 + AluSx SINE Alu 1 279 -33 1835 145 0 17 chr1 15585848 15586028 -227078325 - AluJb SINE Alu 0 313 139 2166 70 0 0 chr1 15586028 15586298 -227078055 - AluY SINE Alu -7 304 35 1835 145 0 17 chr1 15586298 15586435 -227077918 - AluJb SINE Alu -174 139 1 266 340 89 29 chr1 15586439 15586754 -227077599 + L2 LINE L2 2642 2975 -339 329 340 0 0 chr1 15586773 15586870 -227077483 + L2 LINE L2 2660 2756 -558 942 112 0 0 chr1 15586937 15587071 -227077282 - AluSg/x SINE Alu -6 303 170 1565 102 0 0 chr1 15587086 15587302 -227077051 - AluSg1 SINE Alu -93 216 1 373 289 40 13 chr1 15587310 15587459 -227076894 + L2 LINE L2 2898 3050 -263 364 234 133 8 chr1 15587459 15587587 -227076766 + MLT1E LTR MaLR 2 145 -448 587 240 67 17 chr1 15587721 15587900 -227076453 + MLT1E LTR MaLR 406 593 0 2342 87 3 0 chr1 15587949 15588259 -227076094 - AluSx SINE Alu -1 311 1 247 306 35 0 chr1 15588300 15588385 -227075968 + L2 LINE L2 3185 3272 0 786 276 86 16 chr1 15589733 15589976 -227074377 + MIR SINE MIR 3 262 0 277 276 82 20 chr1 15589981 15590079 -227074274 - MIR SINE MIR -87 121 17 2182 122 0 3 chr1 15590485 15590797 -227073556 - AluSx SINE Alu -1 311 1 1012 167 0 0 chr1 15591501 15591663 -227072690 - AluSg/x SINE Alu -15 295 134 361 297 103 11 chr1 15592195 15592370 -227071983 + L2 LINE L2 2454 2644 -670 537 98 24 0 chr1 15592370 15592452 -227071901 - Alu SINE Alu -3 306 223 1085 123 0 7 chr1 15592452 15592606 -227071747 - AluSq SINE Alu -160 153 1 868 98 76 0 chr1 15592641 15592773 -227071580 + AluSg/x SINE Alu 166 307 -5 822 108 0 0 chr1 15592783 15592894 -227071459 + AluJ SINE Alu 1 111 -201 2244 99 20 3 chr1 15592894 15593197 -227071156 - AluSq SINE Alu -5 308 1 414 100 0 0 chr1 15593202 15593262 -227071091 + (TC)n Simple_repeat Simple_repeat 2 61 0 1829 166 16 0 chr1 15593262 15593569 -227070784 - AluSx SINE Alu 0 312 1 1200 172 15 0 chr1 15593570 15593773 -227070580 + AluJ SINE Alu 107 312 0 428 347 10 20 chr1 15593864 15594063 -227070290 + L2 LINE L2 2849 3045 -227 2158 89 0 35 chr1 15594823 15595136 -227069217 - AluSx SINE Alu -10 302 1 478 247 148 25 chr1 15595203 15595365 -227068988 + MIR SINE MIR 47 228 -34 252 136 0 85 chr1 15596326 15596385 -227067968 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 2282 95 0 3 chr1 15596581 15596885 -227067468 + AluSg SINE Alu 1 303 -7 2073 105 18 0 chr1 15597825 15598111 -227066242 + AluSg SINE Alu 1 291 -19 1963 161 8 28 chr1 15598111 15598230 -227066123 + MLT1B LTR MaLR 1 121 -269 2233 117 0 0 chr1 15598230 15598529 -227065824 + AluSx SINE Alu 1 299 -13 1963 161 8 28 chr1 15598529 15598799 -227065554 + MLT1B LTR MaLR 121 382 -8 465 331 62 0 chr1 15598907 15599085 -227065268 + MIR SINE MIR 17 205 -57 482 255 186 16 chr1 15599735 15599923 -227064430 + MIR SINE MIR 29 248 -14 285 118 0 0 chr1 15599975 15600026 -227064327 + (TG)n Simple_repeat Simple_repeat 2 52 0 257 180 0 20 chr1 15601069 15601119 -227063234 + MIR SINE MIR 83 131 -131 2208 121 0 3 chr1 15601208 15601521 -227062832 - AluSx SINE Alu 0 312 1 493 231 118 35 chr1 15602974 15603177 -227061176 + MIR SINE MIR 21 240 -22 2277 90 0 3 chr1 15608348 15608649 -227055704 - AluSx SINE Alu -12 300 1 306 0 0 0 chr1 15608727 15608761 -227055592 + (CCCCG)n Simple_repeat Simple_repeat 5 38 0 1366 217 96 9 chr1 15612757 15613089 -227051264 + MLT1A1 LTR MaLR 5 365 0 2370 80 0 0 chr1 15614303 15614605 -227049748 - AluSc SINE Alu -7 302 1 2091 104 0 17 chr1 15615038 15615337 -227049016 - AluJo SINE Alu -5 307 14 2164 92 3 3 chr1 15616364 15616680 -227047673 + AluSx SINE Alu 1 316 0 215 31 31 0 chr1 15618647 15618679 -227045674 + (TA)n Simple_repeat Simple_repeat 2 34 0 2167 103 3 7 chr1 15619338 15619640 -227044713 - AluSx SINE Alu -11 301 1 835 219 22 0 chr1 15621368 15621546 -227042807 - FRAM SINE Alu 0 176 1 1608 172 11 0 chr1 15621552 15621837 -227042516 - AluJo SINE Alu -24 288 1 2228 102 3 6 chr1 15623135 15623448 -227040905 - AluSx SINE Alu 0 312 1 715 157 0 0 chr1 15623450 15623552 -227040801 - AluJb SINE Alu -22 290 189 189 0 0 0 chr1 15624438 15624459 -227039894 + (T)n Simple_repeat Simple_repeat 1 21 0 209 206 44 59 chr1 15624485 15624553 -227039800 - MIR3 SINE MIR -2 206 140 2101 114 3 3 chr1 15624568 15624866 -227039487 + AluSg SINE Alu 1 298 -12 2240 68 0 14 chr1 15624869 15625194 -227039159 + AluY SINE Alu 1 321 0 219 167 0 0 chr1 15625508 15625550 -227038803 + A-rich Low_complexity Low_complexity 1 42 0 1535 120 20 149 chr1 15625555 15625707 -227038646 + AluJo SINE Alu 2 87 -215 1940 110 0 0 chr1 15625707 15625970 -227038383 + AluSx SINE Alu 1 263 -49 1535 120 20 149 chr1 15625970 15626159 -227038194 + AluJo SINE Alu 87 299 -3 341 355 138 0 chr1 15626229 15626460 -227037893 - L1MC/D LINE L1 -2010 5798 5536 * 409 265 113 59 chr1 15626451 15626666 -227037687 - L1P5 LINE L1 -641 5515 5284 2394 79 3 0 chr1 15626666 15626971 -227037382 - AluSp SINE Alu -7 306 1 409 265 113 59 chr1 15626971 15626993 -227037360 - L1P5 LINE L1 -872 5284 5265 384 306 120 29 chr1 15627049 15627165 -227037188 - L1MC/D LINE L1 -940 5206 5102 2010 142 0 3 chr1 15627165 15627474 -227036879 - AluSx SINE Alu -4 308 1 384 306 120 29 chr1 15627474 15627566 -227036787 - L1MC/D LINE L1 -1044 5102 4979 1034 147 95 171 chr1 15627588 15627915 -227036438 - AluSx SINE Alu 0 302 1 367 261 0 0 chr1 15627956 15628025 -227036328 - FRAM/FAM SINE Alu -106 60 1 2023 87 37 20 chr1 15628181 15628480 -227035873 + AluSx SINE Alu 1 304 -8 371 186 5 0 chr1 15628480 15628563 -227035790 + Alu SINE Alu 1 51 -250 391 217 0 0 chr1 15628663 15628732 -227035621 - AluJ/FLAM SINE Alu -233 69 1 393 211 0 0 chr1 15628783 15628854 -227035499 + MER58 DNA MER1_type 2347 2417 -3 244 218 60 32 chr1 15628988 15629118 -227035235 - L2 LINE L2 -9 3263 3100 1944 137 6 13 chr1 15629165 15629478 -227034875 + AluSx SINE Alu 1 311 -1 390 316 34 0 chr1 15629646 15629763 -227034590 + MER5B DNA MER1_type 58 178 0 295 296 31 0 chr1 15629767 15629865 -227034488 - L2 LINE L2 -1235 2079 1979 423 206 161 50 chr1 15629978 15630196 -227034157 + L1MC5 LINE L1 7547 7788 -173 240 143 0 0 chr1 15630310 15630352 -227034001 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 213 288 50 12 chr1 15630352 15630432 -227033921 - L2 LINE L2 -1490 1824 1742 1809 147 3 32 chr1 15631617 15631929 -227032424 + AluJo SINE Alu 1 303 -9 2188 116 0 7 chr1 15631929 15632231 -227032122 + AluSx SINE Alu 1 300 -12 2331 69 0 7 chr1 15632836 15633139 -227031214 - AluY SINE Alu -10 301 1 2299 97 0 3 chr1 15633188 15633497 -227030856 - AluSq SINE Alu -5 308 1 2181 84 10 7 chr1 15633517 15633815 -227030538 - AluSq SINE Alu -14 299 1 212 308 31 15 chr1 15634128 15634193 -227030160 - MIR3 SINE MIR -45 163 98 320 146 0 8 chr1 15634341 15634409 -227029944 + Alu SINE Alu 247 302 0 1360 141 0 107 chr1 15634630 15634920 -227029433 - AluJo SINE Alu -4 308 50 21 0 0 0 chr1 15634945 15634966 -227029387 + AT_rich Low_complexity Low_complexity 1 21 0 3778 47 0 43 chr1 15634975 15635488 -227028865 + L1PA6 LINE L1 5676 6167 0 858 129 0 0 chr1 15635488 15635604 -227028749 - FLAM_C SINE Alu -17 116 1 2153 122 6 3 chr1 15635798 15636109 -227028244 + AluSx SINE Alu 1 312 0 1792 157 20 3 chr1 15636142 15636448 -227027905 + AluJo SINE Alu 1 311 -1 952 133 176 37 chr1 15636791 15636979 -227027374 + AluJo SINE Alu 83 296 -16 499 273 15 0 chr1 15637864 15637996 -227026357 + L2 LINE L2 3167 3300 -13 2407 74 0 3 chr1 15637998 15638307 -227026046 + AluSq SINE Alu 3 310 -3 288 304 121 67 chr1 15638414 15638537 -227025816 + MIR SINE MIR 13 128 -134 1748 141 3 40 chr1 15638537 15638836 -227025517 + AluJb SINE Alu 5 292 -20 1949 97 38 14 chr1 15638842 15639131 -227025222 + AluSq SINE Alu 1 296 -17 288 304 121 67 chr1 15639131 15639224 -227025129 + MIR SINE MIR 132 248 -14 2173 125 0 0 chr1 15639588 15639899 -227024454 + AluSx SINE Alu 1 311 -1 2061 101 11 0 chr1 15640256 15640574 -227023779 - AluSg SINE Alu 0 321 1 2193 105 0 0 chr1 15641307 15641603 -227022750 + AluSx SINE Alu 3 298 -14 2057 119 10 0 chr1 15641607 15641900 -227022453 + AluSq SINE Alu 1 296 -17 732 197 7 0 chr1 15641913 15642050 -227022303 + FLAM_C SINE Alu 5 142 -1 1810 133 3 43 chr1 15642515 15642815 -227021538 - AluJo SINE Alu -20 292 5 1844 162 3 10 chr1 15643274 15643582 -227020771 + AluJo SINE Alu 1 306 -6 558 266 100 30 chr1 15643627 15643898 -227020455 + L2 LINE L2 3024 3313 0 756 195 167 0 chr1 15644073 15644247 -227020106 + MER58A DNA MER1_type 10 212 -12 1924 125 40 0 chr1 15644289 15644586 -227019767 + AluSx SINE Alu 1 309 -3 2229 99 3 0 chr1 15644590 15644892 -227019461 + AluSq SINE Alu 1 303 -10 2271 91 13 0 chr1 15645372 15645679 -227018674 - AluSp SINE Alu -2 311 1 2150 112 7 0 chr1 15645973 15646276 -227018077 - AluSx SINE Alu -7 305 1 804 243 32 0 chr1 15646481 15646670 -227017683 + L1ME3A LINE L1 5971 6165 -5 2265 63 0 26 chr1 15647189 15647491 -227016862 + AluY SINE Alu 18 311 0 279 102 0 20 chr1 15647507 15647556 -227016797 + AluSp SINE Alu 86 133 -170 2082 106 0 26 chr1 15647558 15647697 -227016656 + AluSx SINE Alu 1 142 -170 2280 73 0 7 chr1 15647697 15647997 -227016356 + AluY SINE Alu 2 299 -12 2082 106 0 26 chr1 15647997 15648182 -227016171 + AluSx SINE Alu 142 312 0 646 226 20 7 chr1 15648197 15648343 -227016010 - MIR SINE MIR -107 155 8 285 146 0 0 chr1 15649055 15649103 -227015250 + (T)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr1 15649225 15649254 -227015099 + AT_rich Low_complexity Low_complexity 1 29 0 28 105 0 0 chr1 15649884 15649989 -227014364 + GC_rich Low_complexity Low_complexity 1 105 0 338 107 18 0 chr1 15650088 15650144 -227014209 + (CCG)n Simple_repeat Simple_repeat 3 59 0 45 111 0 0 chr1 15650146 15650345 -227014008 + GC_rich Low_complexity Low_complexity 1 199 0 974 145 0 13 chr1 15651982 15652177 -227012176 - AluSg/x SINE Alu 0 310 132 1921 85 0 8 chr1 15652177 15652435 -227011918 - AluSx SINE Alu -13 299 44 1481 166 46 14 chr1 15652439 15652722 -227011631 - AluJo SINE Alu -20 292 1 575 246 0 36 chr1 15653527 15653665 -227010688 + FLAM_A SINE Alu 1 133 0 2024 132 0 7 chr1 15653906 15654216 -227010137 - AluSg SINE Alu -2 308 1 549 136 0 0 chr1 15654218 15654299 -227010054 - AluSg/x SINE Alu -21 289 209 277 267 114 42 chr1 15654304 15654493 -227009860 + L2 LINE L2 2756 2955 -317 1331 163 113 25 chr1 15654493 15654776 -227009577 + AluSg SINE Alu 1 308 -2 364 331 47 21 chr1 15654813 15655086 -227009267 + MLT1J2 LTR MaLR 53 364 -86 647 131 0 20 chr1 15655220 15655319 -227009034 + AluS SINE Alu 3 99 -213 2474 139 22 63 chr1 15655376 15655427 -227008926 + MSTA LTR MaLR 1 53 -375 2119 107 13 0 chr1 15655427 15655735 -227008618 + AluSx SINE Alu 1 312 0 2474 139 22 63 chr1 15655735 15656077 -227008276 + MSTA LTR MaLR 53 376 -52 2166 111 0 0 chr1 15656077 15656374 -227007979 + AluSx SINE Alu 3 299 -13 2474 139 22 63 chr1 15656374 15656425 -227007928 + MSTA LTR MaLR 376 428 0 1609 196 0 28 chr1 15656579 15656896 -227007457 + AluJo SINE Alu 1 308 -4 712 292 60 39 chr1 15657126 15657155 -227007198 - L2 LINE L2 0 3313 3286 3648 143 36 0 chr1 15657155 15657713 -227006640 - LTR19B LTR ERV1 0 580 3 712 292 60 39 chr1 15657713 15657967 -227006386 - L2 LINE L2 -27 3286 3024 783 168 23 0 chr1 15658076 15658207 -227006146 + FRAM SINE Alu 10 143 -33 29 70 0 0 chr1 15658218 15658275 -227006078 + AT_rich Low_complexity Low_complexity 1 57 0 824 251 136 8 chr1 15658301 15658648 -227005705 - L2 LINE L2 -287 3026 2633 1212 106 0 0 chr1 15658648 15658827 -227005526 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 1024 123 6 6 chr1 15658839 15659018 -227005335 + (TAGG)n Simple_repeat Simple_repeat 1 179 0 662 224 155 26 chr1 15659020 15659190 -227005163 - L2 LINE L2 -652 2662 2515 2130 114 0 7 chr1 15659190 15659496 -227004857 - AluSq SINE Alu -9 304 1 662 224 155 26 chr1 15659496 15659589 -227004764 - L2 LINE L2 -799 2515 2365 3501 115 22 51 chr1 15659898 15660051 -227004302 + HSMAR2 DNA Mariner 9 165 -1137 1932 99 88 3 chr1 15660051 15660335 -227004018 + AluSc SINE Alu 1 308 -1 3501 115 22 51 chr1 15660335 15660516 -227003837 + HSMAR2 DNA Mariner 165 350 -952 1357 166 64 42 chr1 15660516 15660644 -227003709 + AluJb SINE Alu 1 125 -187 2200 100 3 0 chr1 15660644 15660935 -227003418 + AluSp SINE Alu 1 292 -21 1357 166 64 42 chr1 15660935 15661089 -227003264 + AluJb SINE Alu 125 289 -23 3501 115 22 51 chr1 15661089 15661379 -227002974 + HSMAR2 DNA Mariner 350 616 -686 1301 146 29 38 chr1 15661379 15661462 -227002891 + AluSx SINE Alu 58 140 -172 2118 105 10 7 chr1 15661462 15661767 -227002586 + AluSq SINE Alu 1 306 -7 1301 146 29 38 chr1 15661767 15661922 -227002431 + AluSx SINE Alu 140 294 -18 2024 120 0 0 chr1 15661945 15662241 -227002112 - AluSg SINE Alu -14 296 5 1066 82 0 0 chr1 15662241 15662376 -227001977 - AluSq/x SINE Alu -178 135 1 848 148 6 41 chr1 15662376 15662545 -227001808 - FRAM SINE Alu -13 163 1 2244 101 0 0 chr1 15663113 15663409 -227000944 + AluSg SINE Alu 1 296 -14 2096 112 14 0 chr1 15663921 15664217 -227000136 - AluSc SINE Alu -9 300 1 735 235 175 17 chr1 15664561 15664795 -226999558 + MLT1J1 LTR MaLR 61 331 -115 969 216 129 4 chr1 15664870 15665102 -226999251 - MIR SINE MIR 0 262 2 1455 152 76 4 chr1 15665114 15665377 -226998976 - AluSg SINE Alu -28 282 1 2062 103 14 0 chr1 15667426 15667716 -226996637 - AluSg SINE Alu -16 294 1 486 238 82 0 chr1 15667892 15668014 -226996339 + L2 LINE L2 3140 3271 -1 23 0 0 0 chr1 15668905 15668928 -226995425 + AT_rich Low_complexity Low_complexity 1 23 0 2276 93 0 0 chr1 15669364 15669665 -226994688 - AluSq SINE Alu -12 301 1 1480 103 0 19 chr1 15670193 15670407 -226993946 - AluSg/x SINE Alu -12 298 89 456 157 157 0 chr1 15670480 15670569 -226993784 + FLAM_A SINE Alu 23 125 -17 1968 123 0 41 chr1 15674663 15674762 -226989591 - AluSx SINE Alu -8 304 202 2253 91 3 0 chr1 15674762 15675058 -226989295 - AluSc SINE Alu -8 301 5 1968 123 0 41 chr1 15675058 15675275 -226989078 - AluSx SINE Alu -110 202 1 334 128 0 0 chr1 15675337 15675384 -226988969 + AluS SINE Alu 38 84 -219 1612 168 24 7 chr1 15675483 15675780 -226988573 - AluJo SINE Alu -6 306 5 2042 104 10 0 chr1 15675879 15676168 -226988185 - AluSg SINE Alu -18 292 1 2237 93 7 0 chr1 15676181 15676481 -226987872 - AluSp SINE Alu -11 302 1 840 125 7 15 chr1 15676481 15676617 -226987736 - AluSq/x SINE Alu -177 135 1 1481 219 88 77 chr1 15676625 15677159 -226987194 + L2 LINE L2 2002 2541 -773 1512 107 119 11 chr1 15677159 15677420 -226986933 + AluSg SINE Alu 5 293 -17 801 134 112 15 chr1 15677420 15677578 -226986775 + AluSc SINE Alu 132 302 0 2229 97 10 0 chr1 15677580 15677889 -226986464 + AluSx SINE Alu 1 312 0 1219 121 0 0 chr1 15678441 15678614 -226985739 + AluSg/x SINE Alu 119 291 -19 296 252 69 46 chr1 15678661 15678733 -226985620 + L2 LINE L2 2587 2665 -649 2056 74 3 14 chr1 15678733 15679018 -226985335 - AluY SINE Alu -8 303 22 296 252 69 46 chr1 15679018 15679076 -226985277 + L2 LINE L2 2665 2720 -594 841 127 73 27 chr1 15679182 15679332 -226985021 - AluJb SINE Alu -22 290 134 1554 180 14 0 chr1 15679333 15679627 -226984726 - AluJo SINE Alu -14 298 1 944 269 72 67 chr1 15679632 15679805 -226984548 + L2 LINE L2 2865 3036 -277 718 250 12 0 chr1 15679805 15679965 -226984388 + FRAM SINE Alu 4 165 -1 944 269 72 67 chr1 15679965 15680238 -226984115 + L2 LINE L2 3036 3313 0 1863 115 30 7 chr1 15680442 15680737 -226983616 - AluSg SINE Alu -8 302 1 2411 46 3 16 chr1 15681106 15681413 -226982940 - AluY SINE Alu -8 303 1 2164 77 17 3 chr1 15681902 15682201 -226982152 - AluSp SINE Alu -10 303 1 2052 44 4 25 chr1 15682309 15682583 -226981770 - AluY SINE Alu -43 268 1 548 167 139 0 chr1 15682870 15682978 -226981375 + FLAM_C SINE Alu 1 123 -10 1653 92 141 4 chr1 15682995 15683257 -226981096 + AluSc SINE Alu 2 299 0 737 187 107 7 chr1 15683265 15683415 -226980938 + FRAM SINE Alu 1 165 -1 21 82 0 0 chr1 15684613 15684662 -226979691 + GC_rich Low_complexity Low_complexity 1 49 0 2181 71 17 3 chr1 15686171 15686467 -226977886 - AluSq SINE Alu -13 300 1 630 171 9 0 chr1 15686484 15686595 -226977758 - FLAM_C SINE Alu -30 113 2 1318 159 101 8 chr1 15687656 15687935 -226976418 - AluJo SINE Alu 0 303 1 1890 118 10 0 chr1 15688119 15688416 -226975937 + AluSq SINE Alu 1 300 -13 721 201 81 0 chr1 15688579 15688728 -226975625 + FRAM SINE Alu 1 161 -5 1808 139 4 0 chr1 15688878 15689158 -226975195 - AluSp SINE Alu -7 306 26 6554 129 70 19 chr1 15689258 15690335 -226974018 + Tigger4(Zombi) DNA MER2_type 579 1710 -1021 1770 146 29 0 chr1 15690363 15690671 -226973682 + Tigger4(Zombi) DNA MER2_type 1853 2169 -562 673 363 59 52 chr1 15691776 15692200 -226972153 + MER115 DNA AcHobo 8 434 -259 317 347 139 17 chr1 15692227 15692643 -226971710 - L2 LINE L2 -182 3131 2667 307 217 14 0 chr1 15692658 15692727 -226971626 - MLT1I LTR MaLR -6 403 334 3303 226 4 11 chr1 15692827 15693576 -226970777 - L1P LINE L1 -996 5150 4407 191 111 0 28 chr1 15693636 15693672 -226970681 + (TTC)n Simple_repeat Simple_repeat 3 37 0 1272 216 82 7 chr1 15693706 15693988 -226970365 + MLT1F LTR MaLR 231 533 -9 834 145 0 0 chr1 15694538 15694669 -226969684 - AluSc SINE Alu -169 140 10 724 213 39 45 chr1 15694670 15694825 -226969528 + AluJb SINE Alu 107 260 -52 25 51 0 0 chr1 15694828 15694867 -226969486 + AT_rich Low_complexity Low_complexity 1 39 0 2290 82 0 0 chr1 15694869 15695161 -226969192 + AluSx SINE Alu 1 292 -20 1952 144 0 7 chr1 15695161 15695459 -226968894 + AluJb SINE Alu 1 296 -16 230 264 33 22 chr1 15695477 15695568 -226968785 + L1MC5 LINE L1 7818 7909 -52 281 216 34 11 chr1 15695570 15695658 -226968695 - Charlie4 DNA MER1_type -132 1829 1740 1206 125 0 0 chr1 15695658 15695826 -226968527 + AluSq SINE Alu 1 168 -145 1191 169 62 21 chr1 15695926 15696168 -226968185 - AluJb SINE Alu -59 253 2 1669 105 112 4 chr1 15696207 15696474 -226967879 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 15696785 15696807 -226967546 + AT_rich Low_complexity Low_complexity 1 22 0 1572 97 0 22 chr1 15696810 15696947 -226967406 + AluSx SINE Alu 1 133 -179 2012 121 0 7 chr1 15696947 15697245 -226967108 + AluSg SINE Alu 1 296 -14 1572 97 0 22 chr1 15697245 15697333 -226967020 + AluSx SINE Alu 133 221 -91 590 108 16 78 chr1 15697436 15697565 -226966788 + L1MB3 LINE L1 5859 5979 -204 1921 136 3 3 chr1 15697565 15697866 -226966487 - AluSx SINE Alu -11 301 1 25 0 0 0 chr1 15697868 15697893 -226966460 + AT_rich Low_complexity Low_complexity 1 25 0 850 110 44 0 chr1 15698005 15698141 -226966212 - FRAM SINE Alu -9 167 26 730 213 23 111 chr1 15698172 15698388 -226965965 - AluJo SINE Alu -105 207 11 2033 107 3 7 chr1 15698458 15698749 -226965604 - AluSx SINE Alu -21 291 2 1996 118 3 10 chr1 15698818 15699123 -226965230 - AluSx SINE Alu -9 303 1 662 154 19 0 chr1 15699272 15699376 -226964977 - AluSg/x SINE Alu -14 295 190 2231 74 0 0 chr1 15699743 15700050 -226964303 - AluY SINE Alu 0 307 1 778 99 0 18 chr1 15700508 15700605 -226963748 + AluSc SINE Alu 193 289 -20 822 147 0 0 chr1 15700605 15700721 -226963632 - AluJo/FLAM SINE Alu -185 117 2 778 99 0 18 chr1 15700721 15700734 -226963619 + AluSc SINE Alu 289 301 -8 277 197 45 0 chr1 15700754 15700820 -226963533 - L1MC4 LINE L1 -58 7984 7916 420 315 8 0 chr1 15700829 15700956 -226963397 - L1MC4 LINE L1 -174 7868 7741 780 178 16 0 chr1 15700958 15701087 -226963266 + Tigger3(Golem) DNA MER2_type 2898 3028 -1 1393 193 3 29 chr1 15701122 15701433 -226962920 + AluJb SINE Alu 1 303 -9 973 190 0 11 chr1 15701611 15701785 -226962568 - FAM SINE Alu 0 175 4 2428 47 0 37 chr1 15701816 15702137 -226962216 - AluY SINE Alu -2 309 1 2578 43 0 0 chr1 15702374 15702678 -226961675 - AluY SINE Alu -6 305 2 690 189 16 24 chr1 15702714 15702841 -226961512 - AluJb SINE Alu -19 293 168 433 65 0 86 chr1 15702847 15702940 -226961413 + (TG)n Simple_repeat Simple_repeat 1 85 0 649 173 0 0 chr1 15702940 15703044 -226961309 - FLAM_C SINE Alu -23 120 17 2047 97 7 3 chr1 15703078 15703366 -226960987 - AluSc SINE Alu -18 291 3 207 0 0 0 chr1 15703368 15703391 -226960962 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1111 151 10 44 chr1 15703392 15703597 -226960756 - AluSg/x SINE Alu -29 281 84 2033 119 7 3 chr1 15703603 15703898 -226960455 - AluSg SINE Alu -14 296 1 21 0 0 0 chr1 15703975 15703996 -226960357 + AT_rich Low_complexity Low_complexity 1 21 0 490 196 21 10 chr1 15704127 15704224 -226960129 - FLAM_C SINE Alu -24 119 22 2272 97 0 7 chr1 15704228 15704537 -226959816 + AluSg SINE Alu 1 307 -3 253 67 0 0 chr1 15705201 15705231 -226959122 + Alu SINE Alu 11 40 -261 2218 99 0 0 chr1 15705235 15705529 -226958824 - AluY SINE Alu -17 294 1 822 202 30 0 chr1 15705562 15705730 -226958623 + AluJb SINE Alu 127 299 -13 1847 175 0 0 chr1 15706027 15706330 -226958023 + AluJb SINE Alu 1 303 -9 609 153 96 113 chr1 15706340 15706517 -226957836 + L1MB3 LINE L1 5695 5868 -315 792 182 0 0 chr1 15706620 15706752 -226957601 - FLAM_C SINE Alu 0 133 2 551 144 21 0 chr1 15706754 15706851 -226957502 - L1M4 LINE L1 -394 5784 5686 259 146 0 0 chr1 15706851 15706899 -226957454 - AluJb SINE Alu -4 298 251 953 164 5 35 chr1 15706906 15707107 -226957246 - L1M4 LINE L1 -638 5546 5352 1524 183 4 0 chr1 15707120 15707388 -226956965 - AluJb SINE Alu -43 269 1 41 21 0 0 chr1 15707393 15707441 -226956912 + AT_rich Low_complexity Low_complexity 1 48 0 634 215 8 0 chr1 15707441 15707562 -226956791 - FLAM_C SINE Alu -11 122 1 273 211 0 0 chr1 15707604 15707656 -226956697 - L1M4 LINE L1 -891 5255 5204 2482 51 0 0 chr1 15707694 15707989 -226956364 - AluY SINE Alu -16 295 1 25 0 0 0 chr1 15708294 15708319 -226956034 + AT_rich Low_complexity Low_complexity 1 25 0 1833 123 7 7 chr1 15708319 15708611 -226955742 - AluSq SINE Alu -21 292 1 580 177 100 23 chr1 15708836 15709001 -226955352 - AluJb SINE Alu 0 317 143 2106 101 0 10 chr1 15709128 15709425 -226954928 - AluSx SINE Alu -18 294 1 197 258 76 15 chr1 15710174 15710240 -226954113 + L2 LINE L2 3199 3268 -45 289 152 212 0 chr1 15710240 15710306 -226954047 - AluSg/x SINE Alu -7 293 214 252 0 0 0 chr1 15710425 15710453 -226953900 + (A)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr1 15710495 15710523 -226953830 + AT_rich Low_complexity Low_complexity 1 28 0 2179 105 0 3 chr1 15710599 15710903 -226953450 + AluSq SINE Alu 1 303 -10 2326 101 7 3 chr1 15710903 15711209 -226953144 + AluSp SINE Alu 1 307 -6 2267 98 0 10 chr1 15711411 15711708 -226952645 + AluSx SINE Alu 1 294 -18 210 135 39 58 chr1 15712334 15712386 -226951967 + (CCCG)n Simple_repeat Simple_repeat 1 51 0 324 83 0 0 chr1 15712513 15712561 -226951792 + (CCG)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr1 15712945 15712969 -226951384 + GC_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr1 15715684 15715716 -226948637 + AT_rich Low_complexity Low_complexity 1 32 0 2115 122 3 3 chr1 15716282 15716577 -226947776 + AluSg SINE Alu 1 295 -15 27 29 0 0 chr1 15717052 15717086 -226947267 + AT_rich Low_complexity Low_complexity 1 34 0 1393 159 35 13 chr1 15717499 15717731 -226946622 - AluJb SINE Alu -75 237 1 2103 133 13 0 chr1 15717757 15718065 -226946288 - AluSx SINE Alu 0 312 1 2246 110 0 13 chr1 15718067 15718240 -226946113 - AluSx SINE Alu -6 306 137 2198 105 7 16 chr1 15718240 15718544 -226945809 - AluSg SINE Alu -9 301 1 2246 110 0 13 chr1 15718544 15718680 -226945673 - AluSx SINE Alu -175 137 1 2271 88 24 0 chr1 15719065 15719360 -226944993 - AluSp SINE Alu -11 302 1 457 69 0 0 chr1 15720217 15720275 -226944078 + AluSc SINE Alu 76 133 -176 2345 87 0 26 chr1 15720275 15720584 -226943769 + AluY SINE Alu 1 301 -10 27 0 0 0 chr1 15723442 15723469 -226940884 + AT_rich Low_complexity Low_complexity 1 27 0 1788 160 18 0 chr1 15725248 15725530 -226938823 - AluSx SINE Alu -25 287 1 2193 134 0 0 chr1 15725703 15726009 -226938344 - AluSq SINE Alu -7 306 1 2207 97 26 19 chr1 15726691 15726999 -226937354 + AluSx SINE Alu 3 312 0 1601 137 8 17 chr1 15727021 15727262 -226937091 + AluSq SINE Alu 1 239 -74 2529 61 0 0 chr1 15727640 15727934 -226936419 - AluY SINE Alu -17 294 1 2315 89 10 7 chr1 15728418 15728721 -226935632 - AluSx SINE Alu -8 304 1 1510 152 83 25 chr1 15728952 15729229 -226935124 - AluJo SINE Alu -15 297 5 2157 130 0 0 chr1 15730344 15730636 -226933717 + AluSg SINE Alu 1 292 -18 1123 153 6 0 chr1 15731387 15731557 -226932796 - AluSg/x SINE Alu -13 297 127 2470 75 0 3 chr1 15731769 15732074 -226932279 - AluY SINE Alu -7 304 1 1776 154 29 16 chr1 15732688 15732994 -226931359 - AluSx SINE Alu -2 310 1 316 87 0 0 chr1 15733166 15733212 -226931141 - Alu SINE Alu -3 297 252 1722 153 25 4 chr1 15734955 15735236 -226929117 - AluJo SINE Alu -25 287 1 2476 57 0 47 chr1 15735240 15735558 -226928795 - AluY SINE Alu -8 303 1 249 133 44 0 chr1 15735655 15735700 -226928653 + Alu SINE Alu 270 316 -4 2029 109 3 24 chr1 15735706 15735999 -226928354 + AluSx SINE Alu 4 290 -22 953 123 0 0 chr1 15736061 15736199 -226928154 - AluSg/x SINE Alu -1 311 174 2263 118 0 10 chr1 15736274 15736587 -226927766 - AluSx SINE Alu -2 310 1 2194 107 10 0 chr1 15736602 15736893 -226927460 - AluSp SINE Alu -19 294 1 2160 140 0 6 chr1 15737114 15737429 -226926924 - AluSq SINE Alu 0 313 1 2195 109 0 20 chr1 15737674 15737978 -226926375 - AluSx SINE Alu -14 298 1 1960 84 0 0 chr1 15738256 15738493 -226925860 - AluSg SINE Alu -73 237 1 473 119 95 0 chr1 15738522 15738606 -226925747 - AluSg/x SINE Alu -8 304 213 1489 184 57 3 chr1 15738608 15738907 -226925446 - L1MB8 LINE L1 -38 6140 5826 456 100 0 0 chr1 15738915 15738975 -226925378 - Charlie5 DNA MER1_type -2546 66 7 1535 167 27 38 chr1 15739162 15739316 -226925037 - AluJo SINE Alu -20 292 141 2488 61 3 0 chr1 15739316 15739613 -226924740 - AluY SINE Alu -13 298 1 1535 167 27 38 chr1 15739613 15739751 -226924602 - AluJo SINE Alu -171 141 3 598 109 85 73 chr1 15739886 15739976 -226924377 + Charlie5 DNA MER1_type 2418 2512 -73 2419 77 0 13 chr1 15739976 15740287 -226924066 - AluY SINE Alu -4 307 1 598 109 85 73 chr1 15740287 15740361 -226923992 + Charlie5 DNA MER1_type 2512 2584 -1 26 0 0 0 chr1 15740746 15740772 -226923581 + AT_rich Low_complexity Low_complexity 1 26 0 2221 102 3 0 chr1 15740780 15741088 -226923265 + AluSq SINE Alu 1 309 0 400 111 0 0 chr1 15741652 15741715 -226922638 + FAM SINE Alu 115 177 -2 1730 135 12 12 chr1 15741726 15741985 -226922368 + AluSx SINE Alu 9 267 -45 2248 84 20 0 chr1 15742500 15742796 -226921557 - AluSc SINE Alu -7 302 1 1652 143 121 44 chr1 15742841 15742883 -226921470 - L1MB3 LINE L1 0 6183 6146 2379 79 3 0 chr1 15742883 15743175 -226921178 - AluSp SINE Alu -10 303 11 1652 143 121 44 chr1 15743175 15743497 -226920856 - L1MB3 LINE L1 -37 6146 5791 2216 112 3 13 chr1 15743642 15743947 -226920406 - AluSx SINE Alu -10 302 1 2222 117 7 0 chr1 15744151 15744459 -226919894 - AluSx SINE Alu -2 310 1 1271 178 0 5 chr1 15744731 15744944 -226919409 + AluJo SINE Alu 84 295 -17 2167 104 3 17 chr1 15745160 15745319 -226919034 - AluSx SINE Alu -19 293 138 2190 105 10 7 chr1 15745319 15745625 -226918728 - AluSp SINE Alu -6 307 1 2167 104 3 17 chr1 15745625 15745762 -226918591 - AluSx SINE Alu -174 138 1 333 0 0 0 chr1 15746137 15746174 -226918179 + (TG)n Simple_repeat Simple_repeat 2 38 0 3802 137 72 25 chr1 15746174 15746511 -226917842 - L1MB3 LINE L1 -27 6156 5837 2298 111 0 9 chr1 15746511 15746826 -226917527 - AluSx SINE Alu 0 312 1 3802 137 72 25 chr1 15746826 15747125 -226917228 - L1MB3 LINE L1 -346 5837 5482 1892 148 0 28 chr1 15747125 15747442 -226916911 - AluJb SINE Alu -3 309 2 3802 137 72 25 chr1 15747442 15747496 -226916857 - L1MB3 LINE L1 -701 5482 5432 497 198 74 0 chr1 15747501 15747622 -226916731 - FLAM_A SINE Alu 0 142 13 677 128 83 0 chr1 15747625 15747786 -226916567 - L1MB3 LINE L1 -727 5439 5268 1943 135 7 0 chr1 15747795 15748109 -226916244 - AluSx SINE Alu 0 316 1 536 161 204 36 chr1 15748734 15748871 -226915482 - MER20 DNA MER1_type 0 219 60 1027 196 147 23 chr1 15749033 15749298 -226915055 + AluJb SINE Alu 2 299 -3 26 0 0 0 chr1 15749298 15749324 -226915029 + AT_rich Low_complexity Low_complexity 1 26 0 1675 162 19 42 chr1 15749324 15749633 -226914720 + AluSx SINE Alu 1 302 -10 691 202 309 9 chr1 15749720 15749892 -226914461 - Charlie1 DNA MER1_type -6 2755 2636 2234 120 7 0 chr1 15749892 15750192 -226914161 - AluSx SINE Alu -10 302 1 691 202 309 9 chr1 15750192 15750336 -226914017 - Charlie1 DNA MER1_type -125 2636 2344 247 286 79 0 chr1 15750338 15750401 -226913952 - Charlie1 DNA MER1_type -2693 68 1 863 135 15 8 chr1 15750493 15750626 -226913727 + AluJo SINE Alu 1 134 -178 1264 171 60 0 chr1 15751391 15751608 -226912745 - AluJb SINE Alu -51 261 32 585 136 82 27 chr1 15751638 15751748 -226912605 - FLAM_A SINE Alu -17 116 1 25 0 0 0 chr1 15751985 15752010 -226912343 + AT_rich Low_complexity Low_complexity 1 25 0 1996 99 92 0 chr1 15752159 15752441 -226911912 + AluSq SINE Alu 1 308 -5 606 121 0 0 chr1 15752630 15752713 -226911640 - AluS SINE Alu -227 86 4 2137 140 3 0 chr1 15752843 15753151 -226911202 - AluSq SINE Alu -4 309 1 2356 112 0 0 chr1 15753172 15753485 -226910868 - AluSq SINE Alu 0 313 1 2360 90 0 7 chr1 15753537 15753836 -226910517 - AluSc SINE Alu -12 297 1 2046 137 6 16 chr1 15754412 15754726 -226909627 - AluSx SINE Alu 0 312 2 1764 150 36 20 chr1 15754729 15755035 -226909318 - AluJo SINE Alu -1 311 1 2112 121 21 0 chr1 15755163 15755453 -226908900 + AluSx SINE Alu 1 296 -16 180 111 0 0 chr1 15756173 15756200 -226908153 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 787 168 0 0 chr1 15756202 15756327 -226908026 - FLAM_C SINE Alu -8 125 1 198 246 109 55 chr1 15756334 15756379 -226907974 - MIR SINE MIR -13 249 208 2044 112 24 10 chr1 15756379 15756673 -226907680 - AluSc SINE Alu -7 302 5 198 246 109 55 chr1 15756673 15756737 -226907616 - MIR SINE MIR -54 208 134 195 329 59 0 chr1 15756871 15756956 -226907397 - MIR SINE MIR -147 115 26 2706 42 3 0 chr1 15757807 15758115 -226906238 + AluY SINE Alu 1 309 -2 520 178 30 0 chr1 15758860 15758961 -226905392 + U13 snRNA snRNA 1 104 0 2378 110 0 0 chr1 15759642 15759951 -226904402 + AluSx SINE Alu 1 309 -3 247 232 14 29 chr1 15760194 15760263 -226904090 + MER5A DNA MER1_type 38 105 -84 207 0 0 0 chr1 15761414 15761437 -226902916 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 876 197 0 20 chr1 15761437 15761589 -226902764 - AluJb SINE Alu -30 282 134 976 215 142 11 chr1 15761589 15761850 -226902503 + AluSg1 SINE Alu 15 309 0 2349 110 0 3 chr1 15762504 15762812 -226901541 + AluSq SINE Alu 1 307 -6 1512 179 82 0 chr1 15763192 15763460 -226900893 + AluJb SINE Alu 1 290 -22 1787 169 0 22 chr1 15763489 15763802 -226900551 - AluJb SINE Alu -6 306 1 1429 161 0 9 chr1 15764462 15764692 -226899661 - AluJb SINE Alu 0 312 85 1914 150 3 7 chr1 15764808 15765102 -226899251 + AluJb SINE Alu 1 293 -19 2221 106 3 3 chr1 15765358 15765651 -226898702 - AluSq SINE Alu -18 295 3 189 0 0 0 chr1 15766105 15766126 -226898227 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2063 138 27 0 chr1 15766184 15766482 -226897871 - AluSq SINE Alu -7 306 1 2193 104 26 16 chr1 15768016 15768324 -226896029 - AluSx SINE Alu 0 312 2 35 24 0 0 chr1 15768696 15768738 -226895615 + AT_rich Low_complexity Low_complexity 1 42 0 2349 87 0 13 chr1 15769007 15769306 -226895047 + AluSx SINE Alu 1 295 -17 1740 180 32 0 chr1 15770594 15770877 -226893476 - AluJb SINE Alu -20 292 1 26 0 0 0 chr1 15771034 15771060 -226893293 + AT_rich Low_complexity Low_complexity 1 26 0 2420 88 0 0 chr1 15771637 15771931 -226892422 - AluSg SINE Alu -16 294 1 2337 104 3 0 chr1 15772424 15772723 -226891630 - AluSp SINE Alu -13 300 1 24 53 0 0 chr1 15773521 15773559 -226890794 + AT_rich Low_complexity Low_complexity 1 38 0 618 176 109 0 chr1 15773559 15773678 -226890675 - FLAM_C SINE Alu 0 133 2 276 30 0 0 chr1 15774059 15774077 -226890276 + (CA)n Simple_repeat Simple_repeat 1 18 -300 1688 128 12 19 chr1 15774077 15774334 -226890019 + AluSx SINE Alu 1 255 -57 276 30 0 0 chr1 15774334 15774344 -226890009 + (CA)n Simple_repeat Simple_repeat 17 318 0 276 30 0 0 chr1 15774344 15774377 -226889976 + (CA)n Simple_repeat Simple_repeat 2 34 0 394 248 97 0 chr1 15774542 15774655 -226889698 - L2 LINE L2 -1 3312 3189 2447 87 0 0 chr1 15774655 15774955 -226889398 - AluY SINE Alu -11 300 1 266 294 118 15 chr1 15775259 15775395 -226888958 - MIR SINE MIR -9 253 104 580 171 271 52 chr1 15775659 15775910 -226888443 - MER33 DNA MER1_type 0 324 19 258 231 0 0 chr1 15783927 15783992 -226880361 + C-rich Low_complexity Low_complexity 3 67 0 1793 158 20 27 chr1 15784322 15784619 -226879734 + AluJb SINE Alu 1 295 -17 944 144 0 7 chr1 15784619 15784758 -226879595 + AluSq/x SINE Alu 2 139 -173 1918 126 20 40 chr1 15786077 15786379 -226877974 - AluSx SINE Alu -16 296 1 26 0 0 0 chr1 15786478 15786504 -226877849 + AT_rich Low_complexity Low_complexity 1 26 0 209 57 29 0 chr1 15788053 15788088 -226876265 + (TA)n Simple_repeat Simple_repeat 1 36 0 234 234 0 0 chr1 15793097 15793144 -226871209 + CT-rich Low_complexity Low_complexity 1 47 0 317 238 12 25 chr1 15794385 15794465 -226869888 - L2 LINE L2 0 3313 3235 377 201 51 45 chr1 15795655 15795777 -226868576 + MIR SINE MIR 47 169 -58 260 186 17 0 chr1 15799246 15799305 -226865048 + GA-rich Low_complexity Low_complexity 4 63 0 373 296 89 10 chr1 15800481 15800684 -226863669 + MLT1H LTR MaLR 82 300 -249 282 189 0 0 chr1 15800880 15800933 -226863420 + MLT1G LTR MaLR 537 589 -1 915 150 8 0 chr1 15801143 15801276 -226863077 - AluJb SINE Alu -178 134 1 237 253 13 27 chr1 15801771 15801846 -226862507 + MIR SINE MIR 175 248 -14 1800 141 41 10 chr1 15802540 15802831 -226861522 + AluJb SINE Alu 1 300 -12 2252 95 3 0 chr1 15802836 15803143 -226861210 + AluSx SINE Alu 1 308 0 366 150 0 43 chr1 15803631 15803838 -226860515 + AluJo SINE Alu 1 280 -22 434 266 138 45 chr1 15804724 15804862 -226859491 - L2 LINE L2 -106 3207 3083 2429 88 3 3 chr1 15804862 15805170 -226859183 + AluSg SINE Alu 1 308 -2 434 266 138 45 chr1 15805170 15805343 -226859010 - L2 LINE L2 -230 3083 2867 905 310 109 13 chr1 15805392 15805914 -226858439 - L2 LINE L2 -418 2896 2325 232 315 37 28 chr1 15805919 15806027 -226858326 - L2 LINE L2 -1093 2221 2113 * 240 253 138 11 chr1 15805998 15806085 -226858268 + MIR SINE MIR 49 146 -116 667 129 12 35 chr1 15807444 15807615 -226856738 + GA-rich Low_complexity Low_complexity 3 169 0 893 172 0 7 chr1 15807615 15807766 -226856587 + FRAM SINE Alu 1 40 0 237 265 10 59 chr1 15808210 15808312 -226856041 + MIR SINE MIR 110 206 -56 1505 127 0 5 chr1 15808878 15809091 -226855262 + AluJb SINE Alu 85 296 -16 1752 163 0 14 chr1 15809887 15810170 -226854183 + AluJb SINE Alu 3 281 -31 570 175 0 10 chr1 15810067 15810172 -226854181 + AluJb SINE Alu 180 317 0 216 29 88 0 chr1 15810172 15810206 -226854147 + A-rich Low_complexity Low_complexity 4 180 0 224 300 50 30 chr1 15810443 15810543 -226853810 - MIR SINE MIR -81 181 80 1139 150 12 0 chr1 15810766 15810939 -226853414 + FAM SINE Alu 1 47 -2 739 179 0 0 chr1 15810944 15811067 -226853286 + AluJo/FLAM SINE Alu 1 123 -179 824 179 15 0 chr1 15811067 15811078 -226853275 + AluJo SINE Alu 2 136 -176 248 217 141 22 chr1 15811186 15811278 -226853075 + L1ME3 LINE L1 7 109 -6010 1661 146 19 71 chr1 15811792 15812114 -226852239 + AluJo SINE Alu 6 310 -2 335 265 20 33 chr1 15812240 15812391 -226851962 + L1ME3 LINE L1 4483 4631 -1498 2137 136 3 0 chr1 15812399 15812700 -226851653 + AluJb SINE Alu 1 302 -10 2382 77 7 7 chr1 15812797 15813096 -226851257 + AluSg SINE Alu 1 299 -11 1078 246 114 57 chr1 15813097 15813956 -226850397 + L1ME3 LINE L1 5147 6060 -85 934 83 0 30 chr1 15814763 15814879 -226849474 + FRAM SINE Alu 39 152 -160 198 0 0 0 chr1 15814879 15814901 -226849452 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 934 83 0 30 chr1 15814901 15814916 -226849437 + FRAM SINE Alu 152 166 -10 1785 161 0 4 chr1 15815070 15815349 -226849004 + AluJb SINE Alu 15 292 -20 762 196 0 0 chr1 15815360 15815493 -226848860 + FLAM_C SINE Alu 1 133 0 769 268 13 21 chr1 15815659 15815894 -226848459 - MIR SINE MIR -28 234 2 902 177 111 5 chr1 15815894 15816092 -226848261 + MER20 DNA MER1_type 1 219 0 279 349 47 0 chr1 15816287 15816416 -226847937 - L2 LINE L2 -2 3270 3136 3345 123 5 49 chr1 15816884 15817435 -226846918 + MER1A DNA MER1_type 1 527 -2 1161 103 58 0 chr1 15818355 15818511 -226845842 - AluY SINE Alu -14 297 133 2430 91 0 0 chr1 15818511 15818808 -226845545 - AluSg SINE Alu -13 297 1 331 258 10 62 chr1 15819284 15819381 -226844972 - L1MC4 LINE L1 -1339 6703 6612 305 174 11 33 chr1 15819381 15819473 -226844880 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 313 239 33 43 chr1 15819475 15819567 -226844786 - L1MC4 LINE L1 -1339 6703 6613 271 229 193 28 chr1 15819658 15819767 -226844586 - MIR SINE MIR -36 226 100 244 279 128 0 chr1 15820129 15820215 -226844138 + L2 LINE L2 3216 3312 -1 618 288 39 43 chr1 15820483 15820740 -226843613 + MLT1J LTR MaLR 206 461 -50 219 222 19 0 chr1 15821162 15821216 -226843137 + MIR SINE MIR 196 250 -12 258 250 70 20 chr1 15821216 15821316 -226843037 - L2 LINE L2 -30 3242 3138 608 304 159 5 chr1 15821475 15821847 -226842506 + L2 LINE L2 2289 2717 -597 2060 137 10 13 chr1 15821851 15822164 -226842189 + AluJo SINE Alu 1 312 0 1041 153 5 97 chr1 15822201 15822417 -226841936 - AluJo SINE Alu -116 196 1 2400 82 0 3 chr1 15822516 15822819 -226841534 - AluSx SINE Alu -10 302 1 440 304 127 18 chr1 15823123 15823343 -226841010 - MIR SINE MIR -2 260 17 226 208 26 26 chr1 15823682 15823759 -226840594 + (CCCG)n Simple_repeat Simple_repeat 2 78 0 758 237 64 5 chr1 15824209 15824428 -226839925 - MIR SINE MIR 0 262 31 417 404 29 3 chr1 15824558 15824870 -226839483 + L2 LINE L2 926 1245 -2069 2527 67 0 0 chr1 15824968 15825266 -226839087 - AluY SINE Alu -13 298 1 619 191 56 0 chr1 15825279 15825405 -226838948 - FLAM_A SINE Alu 0 133 1 5705 143 9 27 chr1 15825439 15825566 -226838787 - L1PB1 LINE L1 -2 6149 6021 2695 45 0 0 chr1 15825566 15825874 -226838479 - AluY SINE Alu -3 308 1 5705 143 9 27 chr1 15825874 15826564 -226837789 - L1PB1 LINE L1 -130 6021 5366 1924 107 29 58 chr1 15826564 15826874 -226837479 + AluSx SINE Alu 1 301 -11 5705 143 9 27 chr1 15826874 15827600 -226836753 - L1PB1 LINE L1 -785 5366 4628 493 86 0 0 chr1 15827648 15827718 -226836635 - L1PA11 LINE L1 -1 6173 6104 2780 137 23 68 chr1 15827719 15827786 -226836567 - MER49 LTR ERV1 -268 655 587 2008 142 3 17 chr1 15827786 15828081 -226836272 + AluJo SINE Alu 1 291 -21 2780 137 23 68 chr1 15828081 15828548 -226835805 - MER49 LTR ERV1 -336 587 144 2307 95 0 0 chr1 15828548 15828878 -226835475 + AluSx SINE Alu 1 330 0 2780 137 23 68 chr1 15828878 15828902 -226835451 - MER49 LTR ERV1 -779 144 120 1560 91 5 5 chr1 15828902 15829121 -226835232 - THE1C LTR MaLR 0 375 157 650 162 77 0 chr1 15829124 15829241 -226835112 + AluSq/x SINE Alu 2 127 -185 1158 85 2 51 chr1 15829256 15829453 -226834900 - THE1C LTR MaLR -164 191 1 864 137 0 0 chr1 15829453 15829577 -226834776 - MER49 LTR ERV1 -799 124 1 2485 136 14 16 chr1 15829577 15830012 -226834341 - L1MB1 LINE L1 -248 5920 5487 2449 79 3 0 chr1 15830178 15830470 -226833883 + AluSp SINE Alu 2 294 -19 636 269 94 71 chr1 15832051 15832161 -226832192 - L1MC5 LINE L1 -45 7916 7810 2338 123 0 0 chr1 15832161 15832471 -226831882 - AluSx SINE Alu -2 310 1 636 269 94 71 chr1 15832471 15832955 -226831398 - L1MC5 LINE L1 -151 7810 7308 2124 134 3 3 chr1 15832956 15833254 -226831099 - AluSx SINE Alu -14 298 1 1847 174 6 16 chr1 15833273 15833584 -226830769 - AluJo SINE Alu -4 308 1 534 240 50 42 chr1 15833704 15833924 -226830429 - L1MC4 LINE L1 -760 7201 7032 * 2031 152 51 88 chr1 15833919 15834269 -226830084 - L1MB7 LINE L1 0 6184 5823 2055 127 3 3 chr1 15834269 15834560 -226829793 - AluSx SINE Alu -21 291 1 2031 152 51 88 chr1 15834560 15834737 -226829616 - L1MB7 LINE L1 -361 5823 5675 2165 125 0 7 chr1 15834737 15835042 -226829311 - AluSx SINE Alu -9 303 1 2031 152 51 88 chr1 15835042 15835058 -226829295 - L1MB7 LINE L1 -509 5675 5660 317 317 45 12 chr1 15835056 15835302 -226829051 - L1MC4 LINE L1 -1850 5958 5705 * 1216 123 0 0 chr1 15835318 15835480 -226828873 - AluSq SINE Alu -151 162 1 2237 126 0 3 chr1 15835591 15835901 -226828452 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 15835947 15835969 -226828384 + AT_rich Low_complexity Low_complexity 1 22 0 2423 80 10 0 chr1 15836446 15836746 -226827607 + AluSx SINE Alu 3 305 -7 329 247 11 11 chr1 15836888 15837062 -226827291 + CT-rich Low_complexity Low_complexity 2 175 0 301 316 123 12 chr1 15842430 15842674 -226821679 + HERVL LTR ERVL 4044 4314 -1340 243 214 308 25 chr1 15843001 15843160 -226821193 - L1ME3A LINE L1 -52 6118 5915 622 212 16 54 chr1 15843177 15843326 -226821027 - L1MD3 LINE L1 0 7995 7853 1701 168 10 17 chr1 15843326 15843617 -226820736 + AluJo SINE Alu 1 289 -23 622 212 16 54 chr1 15843617 15843651 -226820702 - L1MD3 LINE L1 -142 7853 7819 320 271 49 8 chr1 15843690 15843812 -226820541 - L1MC3 LINE L1 -163 7622 7496 839 199 14 66 chr1 15843812 15843941 -226820412 - Tigger3(Golem) DNA MER2_type -98 2930 2814 2137 98 0 50 chr1 15843941 15844262 -226820091 + AluSq SINE Alu 1 306 0 839 199 14 66 chr1 15844262 15844342 -226820011 - Tigger3(Golem) DNA MER2_type -214 2814 2731 678 205 0 0 chr1 15844342 15844459 -226819894 + FLAM_C SINE Alu 1 117 -16 419 244 0 0 chr1 15844500 15844582 -226819771 - Tigger3(Golem) DNA MER2_type -2947 82 1 944 159 6 6 chr1 15844583 15844740 -226819613 - MER2 DNA MER2_type -188 157 1 608 216 50 0 chr1 15844878 15845017 -226819336 + MIR SINE MIR 47 192 -70 196 296 0 0 chr1 15845778 15845832 -226818521 - MIR SINE MIR -173 89 36 618 283 38 13 chr1 15845842 15846149 -226818204 + L2 LINE L2 2745 3057 -256 234 130 0 0 chr1 15846814 15846860 -226817493 + Alu SINE Alu 258 303 0 574 175 0 10 chr1 15846865 15846962 -226817391 + AluJ/FLAM SINE Alu 2 97 -215 692 277 142 29 chr1 15846966 15847460 -226816893 - L2 LINE L2 -302 3011 2463 2251 92 7 0 chr1 15847503 15847813 -226816540 - AluSp SINE Alu 0 312 1 619 186 0 0 chr1 15847882 15847995 -226816358 - FLAM_C SINE Alu -19 124 12 2191 108 0 7 chr1 15848021 15848328 -226816025 + AluSg SINE Alu 1 305 0 995 155 0 0 chr1 15848333 15848481 -226815872 + AluJo SINE Alu 87 234 -78 1181 120 0 0 chr1 15848500 15848658 -226815695 - AluJb SINE Alu -154 158 1 1859 240 42 4 chr1 15848661 15849136 -226815217 - L1MD3 LINE L1 -6 7989 7497 2109 131 0 23 chr1 15849170 15849475 -226814878 + AluSq SINE Alu 1 298 -15 1778 153 7 21 chr1 15849480 15849762 -226814591 + AluJb SINE Alu 1 278 -34 23 0 0 0 chr1 15849841 15849864 -226814489 + AT_rich Low_complexity Low_complexity 1 23 0 1857 195 46 72 chr1 15849881 15850204 -226814149 - MLT1D LTR MaLR 0 505 198 2430 84 0 3 chr1 15850204 15850503 -226813850 - AluSx SINE Alu -13 299 2 1857 195 46 72 chr1 15850503 15850676 -226813677 - MLT1D LTR MaLR -307 198 22 292 219 37 0 chr1 15850694 15850776 -226813577 - MER113 DNA MER1_type? -317 204 120 1875 160 0 63 chr1 15850809 15851141 -226813212 + AluSx SINE Alu 1 311 -1 2252 99 3 0 chr1 15851155 15851465 -226812888 + AluSp SINE Alu 1 311 0 2481 90 0 0 chr1 15851488 15851798 -226812555 - AluY SINE Alu -1 310 1 2482 88 0 3 chr1 15852388 15852695 -226811658 + AluSg SINE Alu 1 306 -4 180 94 0 31 chr1 15853140 15853172 -226811181 + MIR SINE MIR 113 143 -119 543 253 154 0 chr1 15853202 15853364 -226810989 + MER5A DNA MER1_type 3 189 0 1662 166 53 11 chr1 15853549 15853833 -226810520 + AluJb SINE Alu 1 296 -16 460 320 111 48 chr1 15854485 15854801 -226809552 - L2 LINE L2 0 3313 2978 203 294 44 0 chr1 15855153 15855221 -226809132 - L2 LINE L2 -18 3295 3225 1902 153 24 3 chr1 15855397 15855692 -226808661 - AluJo SINE Alu -11 301 1 448 289 57 61 chr1 15855696 15855942 -226808411 - MIR SINE MIR -13 249 5 272 332 34 88 chr1 15855964 15856259 -226808094 - L2 LINE L2 -49 3223 2945 429 280 18 48 chr1 15856290 15856458 -226807895 - L2 LINE L2 0 3313 3151 277 289 146 57 chr1 15856447 15856467 -226807886 - L2 LINE L2 -475 2839 2822 * 2213 97 0 52 chr1 15856467 15856796 -226807557 + AluSx SINE Alu 1 312 0 277 289 146 57 chr1 15856796 15857021 -226807332 - L2 LINE L2 -492 2822 2572 562 288 43 5 chr1 15857519 15857703 -226806650 - MIR SINE MIR -71 191 1 1148 195 20 46 chr1 15858711 15859013 -226805340 + LTR37A LTR ERV1 62 355 -71 1707 203 11 30 chr1 15859017 15859167 -226805186 + L1MB7 LINE L1 5541 5692 -492 2280 90 17 7 chr1 15859167 15859466 -226804887 + AluSq SINE Alu 1 302 -11 1707 203 11 30 chr1 15859466 15859685 -226804668 + L1MB7 LINE L1 5692 5903 -281 1738 171 3 47 chr1 15859685 15860007 -226804346 - AluJb SINE Alu -4 308 1 1534 176 4 0 chr1 15860008 15860263 -226804090 - AluJb SINE Alu -15 297 42 505 284 159 10 chr1 15860651 15860852 -226803501 + MIR SINE MIR 32 262 0 322 268 41 10 chr1 15861518 15861615 -226802738 + MIR SINE MIR 48 147 -61 282 234 23 141 chr1 15861612 15861740 -226802613 + L2 LINE L2 3159 3271 -1 * 721 248 95 18 chr1 15865959 15866181 -226798172 + MIR SINE MIR 20 258 -4 279 296 82 10 chr1 15866437 15866535 -226797818 + MIR SINE MIR 69 173 -89 270 138 0 0 chr1 15866727 15866785 -226797568 + (CCCTG)n Simple_repeat Simple_repeat 3 60 0 2199 96 3 0 chr1 15867143 15867434 -226796919 + AluSx SINE Alu 1 292 -20 957 131 13 0 chr1 15867453 15867606 -226796747 - FRAM SINE Alu -22 154 1 2049 127 0 28 chr1 15867833 15867974 -226796379 + AluSq SINE Alu 1 144 -169 2095 113 10 0 chr1 15867974 15868266 -226796087 + AluSp SINE Alu 1 295 -18 2049 127 0 28 chr1 15868266 15868446 -226795907 + AluSq SINE Alu 144 313 0 235 375 76 0 chr1 15868451 15868595 -226795758 - MIR SINE MIR -6 256 102 2090 112 20 0 chr1 15869082 15869377 -226794976 - AluSx SINE Alu -11 301 1 744 139 47 39 chr1 15869379 15869508 -226794845 - AluJo/FLAM SINE Alu -172 130 1 1207 171 70 9 chr1 15869525 15869753 -226794600 - AluJo SINE Alu -69 243 2 2360 78 3 3 chr1 15869986 15870295 -226794058 + AluSq SINE Alu 1 309 -4 2067 122 0 38 chr1 15870299 15870618 -226793735 + AluSq SINE Alu 3 309 -4 245 329 12 0 chr1 15871494 15871576 -226792777 - MIR3 SINE MIR -45 163 81 1088 175 27 136 chr1 15872628 15872966 -226791387 + AluJo SINE Alu 1 301 -1 687 108 0 0 chr1 15872966 15873068 -226791285 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 281 284 8 87 chr1 15873579 15873706 -226790647 + MIR SINE MIR 116 232 -30 * 302 287 45 64 chr1 15873699 15873856 -226790497 - MIR SINE MIR -22 240 87 202 289 58 0 chr1 15875062 15875114 -226789239 - MIR SINE MIR -92 170 116 229 256 314 0 chr1 15875122 15875208 -226789145 + L2 LINE L2 3201 3313 0 * 284 351 15 37 chr1 15875191 15875325 -226789028 - MIR3 SINE MIR -69 139 9 409 196 88 0 chr1 15875494 15875596 -226788757 + MER90 LTR ERV1 488 598 -16 297 0 0 0 chr1 15876380 15876413 -226787940 + (TG)n Simple_repeat Simple_repeat 2 34 0 1345 147 0 26 chr1 15876413 15876634 -226787719 - AluJo SINE Alu -11 301 85 257 228 18 0 chr1 15876640 15876697 -226787656 - MIR SINE MIR -63 145 88 201 294 0 0 chr1 15876699 15876750 -226787603 + L2 LINE L2 3262 3312 -1 2559 226 32 4 chr1 15876969 15877526 -226786827 + MER90 LTR ERV1 3 575 0 1011 159 0 2 chr1 15877762 15877978 -226786375 + (CCA)n Simple_repeat Simple_repeat 1 396 0 267 294 198 16 chr1 15877993 15878119 -226786234 + MIR3 SINE MIR 6 154 -54 2184 104 3 0 chr1 15878188 15878486 -226785867 + AluSx SINE Alu 1 299 -13 2165 98 0 0 chr1 15879129 15879466 -226784887 + AluSx SINE Alu 2 312 0 647 277 120 45 chr1 15879506 15879881 -226784472 + L2 LINE L2 2868 3270 -2 819 156 0 8 chr1 15880159 15880287 -226784066 + FLAM_C SINE Alu 1 127 -6 203 204 0 19 chr1 15880287 15880341 -226784012 + T-rich Low_complexity Low_complexity 3 55 0 1761 148 44 7 chr1 15880370 15880668 -226783685 + AluJo SINE Alu 1 309 -3 1927 144 30 0 chr1 15880960 15881259 -226783094 + AluJb SINE Alu 1 308 -4 341 285 11 62 chr1 15881270 15881449 -226782904 + L1MEd LINE L1 544 713 -5406 2023 106 49 0 chr1 15881449 15881733 -226782620 + AluSx SINE Alu 1 298 -14 2158 91 0 20 chr1 15881795 15882092 -226782261 - AluSx SINE Alu -21 291 1 210 143 0 0 chr1 15882108 15882143 -226782210 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 2020 201 37 5 chr1 15882143 15882550 -226781803 - MER21B LTR ERV1 -427 436 17 1507 166 73 64 chr1 15882566 15882625 -226781728 + L1MB7 LINE L1 5352 5409 -775 1279 162 97 97 chr1 15882625 15882790 -226781563 + MLT1A2 LTR MaLR 5 169 -205 1901 175 3 0 chr1 15882790 15883125 -226781228 - AluJb SINE Alu 0 312 1 1279 162 97 97 chr1 15883125 15883329 -226781024 + MLT1A2 LTR MaLR 168 374 0 1507 166 73 64 chr1 15883329 15883534 -226780819 + L1MB7 LINE L1 5409 5611 -573 2342 75 0 0 chr1 15883534 15883828 -226780525 + AluY SINE Alu 1 294 -17 2049 147 0 0 chr1 15883837 15884144 -226780209 + AluSx SINE Alu 1 307 -5 1507 166 73 64 chr1 15884144 15884308 -226780045 + L1MB7 LINE L1 5618 5782 -402 1986 142 0 0 chr1 15884309 15884639 -226779714 + AluSx SINE Alu 1 330 0 549 108 36 27 chr1 15885128 15885239 -226779114 + L1MB7 LINE L1 5785 5896 -282 887 191 6 0 chr1 15885242 15885399 -226778954 - AluJb SINE Alu -22 290 133 1910 136 0 11 chr1 15885419 15885730 -226778623 - AluSx SINE Alu 0 308 1 960 132 84 0 chr1 15885730 15885920 -226778433 + L1MB7 LINE L1 5908 6113 -71 3968 89 0 8 chr1 15885923 15886438 -226777915 - MER9 LTR ERVK 0 511 1 15871 61 15 6 chr1 15886438 15888628 -226775725 - HERVK9 LTR ERVK 0 5916 3708 * 20525 63 2 1 chr1 15888626 15891409 -226772944 - HERVK9 LTR ERVK -3130 2786 1 3973 92 0 4 chr1 15891409 15891922 -226772431 - MER9 LTR ERVK 0 511 1 254 102 0 0 chr1 15891928 15891977 -226772376 + L1MB7 LINE L1 6117 6165 -19 812 96 0 0 chr1 15892028 15892132 -226772221 + AluSq/x SINE Alu 1 104 -208 756 107 0 0 chr1 15892424 15892527 -226771826 - FRAM SINE Alu -14 162 60 515 177 0 0 chr1 15892577 15892656 -226771697 + AluJ/FLAM SINE Alu 16 94 -218 644 270 75 26 chr1 15893173 15893399 -226770954 + MIR SINE MIR 9 245 -17 701 268 63 58 chr1 15893436 15893783 -226770570 - L2 LINE L2 -86 3227 2879 468 232 20 73 chr1 15893798 15893949 -226770404 - MER20 DNA MER1_type -74 145 3 1435 133 165 16 chr1 15894449 15894704 -226769649 - AluJo SINE Alu -18 294 2 186 43 0 0 chr1 15894791 15894814 -226769539 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 213 223 0 0 chr1 15895024 15895118 -226769235 + (CA)n Simple_repeat Simple_repeat 1 94 0 226 278 196 0 chr1 15895500 15895597 -226768756 + MIR SINE MIR 25 140 -68 238 310 149 0 chr1 15896413 15896500 -226767853 + MIR SINE MIR 46 145 -63 278 253 105 11 chr1 15896600 15896695 -226767658 + MIR3 SINE MIR 52 155 -53 2044 104 31 0 chr1 15896757 15897044 -226767309 + AluSx SINE Alu 1 296 -16 1662 140 0 0 chr1 15897053 15897289 -226767064 + AluSx SINE Alu 1 236 -76 2221 78 0 0 chr1 15897330 15897636 -226766717 + AluSc SINE Alu 1 306 0 277 301 161 7 chr1 15898344 15898487 -226765866 - MIR SINE MIR -70 192 28 181 337 184 0 chr1 15898599 15898697 -226765656 + MIR SINE MIR 141 256 -6 464 326 96 21 chr1 15899626 15900046 -226764307 + L2 LINE L2 2746 3220 -52 248 274 186 0 chr1 15900061 15900174 -226764179 - L2 LINE L2 0 3313 3180 2179 84 14 3 chr1 15900296 15900592 -226763761 + AluSg SINE Alu 1 299 -11 749 252 87 22 chr1 15900840 15900947 -226763406 + MIR SINE MIR 15 114 -148 492 234 47 23 chr1 15900947 15901075 -226763278 + MER94 DNA DNA 1 131 -3 749 252 87 22 chr1 15901075 15901197 -226763156 + MIR SINE MIR 114 259 -3 234 0 0 0 chr1 15901219 15901245 -226763108 + (CA)n Simple_repeat Simple_repeat 1 26 0 1956 142 0 26 chr1 15901385 15901694 -226762659 - AluSq SINE Alu -12 301 1 238 331 39 15 chr1 15902341 15902471 -226761882 - MIR SINE MIR -59 149 17 396 235 92 8 chr1 15902553 15902672 -226761681 + MIR SINE MIR 64 192 -70 334 299 0 31 chr1 15903006 15903103 -226761250 - L2 LINE L2 0 3313 3220 426 280 82 104 chr1 15903703 15903982 -226760371 + L2 LINE L2 2973 3245 -27 613 290 12 0 chr1 15904152 15904321 -226760032 + MIR SINE MIR 90 260 -2 2263 189 36 61 chr1 15904356 15904629 -226759724 - L1MC3 LINE L1 -503 7282 7004 2037 148 0 3 chr1 15904629 15904932 -226759421 - AluSx SINE Alu -10 302 1 2263 189 36 61 chr1 15904932 15905302 -226759051 - L1MC3 LINE L1 -781 7004 6655 183 262 0 0 chr1 15906032 15906074 -226758279 + MIR SINE MIR 37 78 -130 306 295 152 10 chr1 15906078 15906384 -226757969 + L2 LINE L2 2716 3096 -176 414 353 35 6 chr1 15906461 15906503 -226757850 + MIR3 SINE MIR 11 50 -158 2393 86 0 0 chr1 15906503 15906807 -226757546 + AluSc SINE Alu 2 305 -4 414 353 35 6 chr1 15906807 15906937 -226757416 + MIR3 SINE MIR 50 188 -20 341 319 61 43 chr1 15906918 15907081 -226757272 + MIR SINE MIR 47 212 -50 * 28 0 0 0 chr1 15907503 15907531 -226756822 + AT_rich Low_complexity Low_complexity 1 28 0 271 271 0 41 chr1 15908441 15908563 -226755790 + G-rich Low_complexity Low_complexity 4 120 0 637 199 35 7 chr1 15908716 15908857 -226755496 - MIR SINE MIR -67 195 51 284 337 123 6 chr1 15909760 15909923 -226754430 + MER5A DNA MER1_type 8 189 0 297 233 68 0 chr1 15910001 15910074 -226754279 + L2 LINE L2 3195 3272 0 222 222 0 37 chr1 15910298 15910352 -226754001 - L2 LINE L2 0 3313 3262 305 219 61 12 chr1 15911291 15911373 -226752980 - MIR SINE MIR -161 101 16 207 269 75 0 chr1 15912007 15912074 -226752279 + MIR SINE MIR 68 139 -69 355 284 167 29 chr1 15912091 15912295 -226752058 + MIR SINE MIR 31 262 0 195 333 37 0 chr1 15912752 15912833 -226751520 + MIR SINE MIR 63 146 -116 556 270 153 5 chr1 15912956 15913145 -226751208 + MIR SINE MIR 17 233 -29 1949 151 0 0 chr1 15913742 15914040 -226750313 - AluJb SINE Alu -14 298 1 252 314 57 0 chr1 15914117 15914222 -226750131 + L2 LINE L2 2966 3076 -196 207 292 0 0 chr1 15914225 15914314 -226750039 + (CA)n Simple_repeat Simple_repeat 1 89 0 233 274 0 0 chr1 15914353 15914404 -226749949 + L2 LINE L2 3248 3298 -15 2241 103 0 0 chr1 15914408 15914708 -226749645 + AluSq SINE Alu 1 300 -13 204 347 6 40 chr1 15915595 15915768 -226748585 + G-rich Low_complexity Low_complexity 6 172 0 247 322 17 39 chr1 15915933 15916113 -226748240 + G-rich Low_complexity Low_complexity 3 178 0 207 237 88 105 chr1 15917405 15917519 -226746834 - MIR SINE MIR -33 229 118 383 309 49 0 chr1 15918419 15918542 -226745811 - MIR SINE MIR -118 144 16 1886 166 3 0 chr1 15918984 15919280 -226745073 - AluJo SINE Alu -15 297 1 288 0 0 0 chr1 15919414 15919446 -226744907 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2084 92 4 0 chr1 15919448 15919720 -226744633 + AluSp SINE Alu 1 273 -40 367 302 99 12 chr1 15919820 15919992 -226744361 - L1MD3 LINE L1 -102 7893 7707 792 199 14 66 chr1 15919992 15920121 -226744232 - Tigger3(Golem) DNA MER2_type -98 2930 2814 2036 98 0 50 chr1 15920121 15920442 -226743911 + AluSq SINE Alu 1 306 0 792 199 14 66 chr1 15920442 15920522 -226743831 - Tigger3(Golem) DNA MER2_type -214 2814 2731 720 205 0 0 chr1 15920522 15920639 -226743714 + FLAM_C SINE Alu 1 117 -16 388 244 0 0 chr1 15920680 15920762 -226743591 - Tigger3(Golem) DNA MER2_type -2947 82 1 880 159 6 6 chr1 15920763 15920920 -226743433 - MER2 DNA MER2_type -188 157 1 563 216 60 0 chr1 15921058 15921192 -226743161 + MIR SINE MIR 47 188 -74 188 346 187 0 chr1 15921647 15921754 -226742599 + L2 LINE L2 3180 3306 -7 217 311 22 33 chr1 15921911 15922001 -226742352 - MIR SINE MIR -138 124 36 708 284 72 5 chr1 15922011 15922315 -226742038 + L2 LINE L2 2745 3068 -245 182 326 12 47 chr1 15922900 15922986 -226741367 - L2 LINE L2 -6 3307 3225 594 184 0 10 chr1 15923020 15923118 -226741235 + AluJ/FLAM SINE Alu 1 97 -215 846 293 132 19 chr1 15923122 15923616 -226740737 - L2 LINE L2 -302 3011 2463 2184 81 7 0 chr1 15923659 15923965 -226740388 - AluSp SINE Alu 0 308 1 682 186 0 0 chr1 15924034 15924147 -226740206 - FLAM_C SINE Alu -19 124 12 2087 108 0 7 chr1 15924173 15924480 -226739873 + AluSg SINE Alu 1 305 0 936 181 0 0 chr1 15924485 15924640 -226739713 + AluJo SINE Alu 87 241 -71 1130 120 0 0 chr1 15924652 15924810 -226739543 - AluJb SINE Alu -154 158 1 1738 242 42 4 chr1 15924813 15925288 -226739065 - L1MD3 LINE L1 -6 7989 7497 2129 108 0 23 chr1 15925322 15925627 -226738726 + AluSq SINE Alu 1 298 -15 1672 160 7 21 chr1 15925632 15925914 -226738439 + AluJb SINE Alu 1 278 -34 23 0 0 0 chr1 15925993 15926016 -226738337 + AT_rich Low_complexity Low_complexity 1 23 0 1734 197 36 74 chr1 15926033 15926362 -226737991 - MLT1D LTR MaLR 0 505 200 2314 84 0 3 chr1 15926362 15926661 -226737692 - AluSx SINE Alu -13 299 2 1734 197 36 74 chr1 15926661 15926834 -226737519 - MLT1D LTR MaLR -305 200 22 257 254 33 16 chr1 15926852 15926967 -226737386 - MER113 DNA MER1_type? -317 204 85 1819 157 0 60 chr1 15926967 15927298 -226737055 + AluSx SINE Alu 1 311 -1 2170 95 3 0 chr1 15927312 15927622 -226736731 + AluSp SINE Alu 1 311 0 2404 84 0 0 chr1 15927645 15927955 -226736398 - AluY SINE Alu -1 310 1 2344 88 0 3 chr1 15928545 15928850 -226735503 + AluSg SINE Alu 1 304 -6 185 94 0 31 chr1 15929295 15929327 -226735026 + MIR SINE MIR 113 143 -119 613 210 161 6 chr1 15929357 15929519 -226734834 + MER5A DNA MER1_type 3 189 0 1597 166 53 11 chr1 15929704 15929988 -226734365 + AluJb SINE Alu 1 296 -16 522 320 111 48 chr1 15930640 15930956 -226733397 - L2 LINE L2 0 3313 2978 199 257 86 0 chr1 15931308 15931378 -226732975 - L2 LINE L2 -18 3295 3220 1819 153 24 3 chr1 15931553 15931848 -226732505 - AluJo SINE Alu -11 301 1 452 293 57 61 chr1 15931852 15932098 -226732255 - MIR SINE MIR -13 249 5 337 319 119 37 chr1 15932120 15932415 -226731938 - L2 LINE L2 -49 3264 2946 452 280 23 46 chr1 15932446 15932621 -226731732 - L2 LINE L2 0 3313 3143 322 298 143 49 chr1 15932603 15932623 -226731730 - L2 LINE L2 -475 2839 2822 * 1966 100 6 58 chr1 15932623 15932952 -226731401 + AluSx SINE Alu 1 312 0 322 298 143 49 chr1 15932952 15933176 -226731177 - L2 LINE L2 -492 2822 2572 629 283 43 5 chr1 15933674 15933858 -226730495 - MIR SINE MIR -71 191 1 1082 214 22 11 chr1 15934893 15935169 -226729184 + LTR37A LTR ERV1 77 355 -71 1529 202 19 30 chr1 15935173 15935320 -226729033 + L1MB7 LINE L1 5541 5688 -496 2182 90 17 7 chr1 15935320 15935619 -226728734 + AluSq SINE Alu 1 302 -11 1529 202 19 30 chr1 15935619 15935838 -226728515 + L1MB7 LINE L1 5688 5903 -281 1543 186 3 47 chr1 15935838 15936160 -226728193 - AluJb SINE Alu -4 308 1 1479 176 4 0 chr1 15936161 15936416 -226727937 - AluJb SINE Alu -15 297 42 491 289 159 10 chr1 15936804 15937005 -226727348 + MIR SINE MIR 32 262 0 322 268 41 10 chr1 15937670 15937767 -226726586 + MIR SINE MIR 48 147 -61 298 259 35 60 chr1 15937764 15937880 -226726473 + L2 LINE L2 3159 3271 -1 * 246 105 0 0 chr1 15941986 15942024 -226722329 + (GGA)n Simple_repeat Simple_repeat 2 39 0 278 270 155 40 chr1 15942985 15943133 -226721220 - MIR SINE MIR -70 192 28 211 257 97 53 chr1 15944185 15944298 -226720055 - MER5A DNA MER1_type -22 167 50 378 286 0 71 chr1 15944335 15944475 -226719878 - L2 LINE L2 -6 3266 3137 206 192 200 67 chr1 15944449 15944569 -226719784 - MIR3 SINE MIR -62 146 11 * 268 307 170 0 chr1 15945055 15945208 -226719145 + MIR SINE MIR 63 241 -21 320 349 81 15 chr1 15945471 15945669 -226718684 + MIR SINE MIR 27 237 -25 441 301 26 32 chr1 15948133 15948289 -226716064 + MIR3 SINE MIR 46 200 -8 669 247 47 16 chr1 15948531 15948721 -226715632 - MIR SINE MIR -32 230 35 184 316 40 0 chr1 15949305 15949381 -226714972 + MIR SINE MIR 67 145 -63 1607 147 22 67 chr1 15949424 15949736 -226714617 + AluJb SINE Alu 1 298 -14 2188 81 7 3 chr1 15949776 15950086 -226714267 - AluSq SINE Alu 0 312 2 28 0 0 0 chr1 15950952 15950980 -226713373 + GC_rich Low_complexity Low_complexity 1 28 0 301 194 30 0 chr1 15951059 15951126 -226713227 + MIR SINE MIR 103 171 -91 213 258 15 15 chr1 15951525 15951591 -226712762 + CT-rich Low_complexity Low_complexity 1 66 0 331 312 78 0 chr1 15952932 15953073 -226711280 - MIR SINE MIR -55 207 56 342 303 77 3 chr1 15953450 15953601 -226710752 + MIR SINE MIR 65 241 -21 189 280 67 0 chr1 15954843 15954918 -226709435 + MIR SINE MIR 49 128 -80 367 263 89 30 chr1 15954957 15955095 -226709258 - MIR3 SINE MIR -70 138 5 203 301 84 12 chr1 15955236 15955319 -226709034 + MIR3 SINE MIR 97 185 -23 506 250 47 27 chr1 15955942 15956090 -226708263 + MIR SINE MIR 38 188 -74 199 325 9 38 chr1 15956783 15956889 -226707464 + MIR SINE MIR 8 109 -105 373 290 14 36 chr1 15959564 15959702 -226704651 + MIR3 SINE MIR 24 158 -50 575 246 123 0 chr1 15959880 15960059 -226704294 + MIR SINE MIR 45 245 -17 334 275 122 8 chr1 15960130 15960261 -226704092 - MIR3 SINE MIR -58 150 5 1660 114 65 30 chr1 15961898 15962026 -226702327 + AluSx SINE Alu 3 125 -187 612 0 0 0 chr1 15962026 15962094 -226702259 + (CA)n Simple_repeat Simple_repeat 2 69 0 1660 114 65 30 chr1 15962094 15962227 -226702126 + AluSx SINE Alu 125 273 -39 513 258 78 88 chr1 15962631 15962801 -226701552 + LTR16A1 LTR ERVL 59 229 -228 2107 139 0 0 chr1 15962801 15963111 -226701242 + AluSx SINE Alu 1 310 -2 513 258 78 88 chr1 15963111 15963339 -226701014 + LTR16A1 LTR ERVL 229 453 -4 467 305 57 23 chr1 15964293 15964470 -226699883 + MIR SINE MIR 46 228 -34 1962 125 50 0 chr1 15964967 15965264 -226699089 - AluSx SINE Alu 0 312 1 257 288 176 7 chr1 15966816 15966969 -226697384 + MIR SINE MIR 63 241 -21 324 343 81 15 chr1 15967232 15967430 -226696923 + MIR SINE MIR 27 237 -25 246 62 0 0 chr1 15968386 15968418 -226695935 + (CA)n Simple_repeat Simple_repeat 1 32 0 461 308 27 0 chr1 15969833 15969979 -226694374 + MIR3 SINE MIR 51 200 -8 670 247 47 16 chr1 15970229 15970419 -226693934 - MIR SINE MIR -32 230 35 237 194 129 16 chr1 15970775 15970837 -226693516 - MIR SINE MIR -62 146 78 198 326 11 22 chr1 15971086 15971178 -226693175 + MIR SINE MIR 55 145 -63 1584 180 3 11 chr1 15971196 15971515 -226692838 + AluJo SINE Alu 1 317 0 1439 215 24 0 chr1 15971528 15971816 -226692537 + AluJo SINE Alu 1 295 -17 257 284 74 0 chr1 15972854 15972935 -226691418 + MIR SINE MIR 83 169 -93 204 291 0 47 chr1 15973335 15973421 -226690932 + CT-rich Low_complexity Low_complexity 4 85 0 403 275 101 0 chr1 15974688 15974826 -226689527 - MIR SINE MIR -55 207 56 367 287 37 0 chr1 15975191 15975299 -226689054 + MIR3 SINE MIR 60 171 -37 182 301 48 29 chr1 15976542 15976645 -226687708 + MIR SINE MIR 24 128 -80 384 246 89 30 chr1 15976684 15976822 -226687531 - MIR3 SINE MIR -70 138 5 181 265 41 0 chr1 15976964 15977013 -226687340 + MIR SINE MIR 95 145 -117 1922 144 10 0 chr1 15977071 15977362 -226686991 - AluSx SINE Alu -18 294 1 503 250 47 27 chr1 15977872 15978020 -226686333 + MIR SINE MIR 38 188 -74 378 284 37 0 chr1 15978374 15978483 -226685870 - MER91A DNA MER1_type -82 114 2 259 348 0 0 chr1 15978506 15978595 -226685758 + MIR SINE MIR 69 157 -105 331 221 18 80 chr1 15979259 15979372 -226684981 + MIR SINE MIR 65 170 -92 245 345 0 27 chr1 15980043 15980153 -226684200 + MIR3 SINE MIR 13 119 -89 319 294 29 37 chr1 15982820 15982956 -226681397 + MIR3 SINE MIR 24 158 -50 582 256 117 0 chr1 15983134 15983314 -226681039 + MIR SINE MIR 45 245 -17 333 304 22 37 chr1 15983385 15983520 -226680833 - MIR SINE MIR -58 150 18 657 257 120 44 chr1 15985470 15985836 -226678517 + LTR16A1 LTR ERVL 61 454 -3 21 0 0 0 chr1 15986413 15986434 -226677919 + GC_rich Low_complexity Low_complexity 1 21 0 445 322 51 17 chr1 15986801 15986978 -226677375 + MIR SINE MIR 46 228 -34 345 261 60 37 chr1 15987101 15987235 -226677118 + L1MCa LINE L1 1944 2080 -4346 350 317 177 58 chr1 15987867 15989455 -226674898 + L2 LINE L2 868 2644 -670 266 324 120 12 chr1 15989641 15989882 -226674471 + LTR16A1 LTR ERVL 161 427 -30 2087 107 45 0 chr1 15989931 15990221 -226674132 - AluSx SINE Alu -9 303 1 210 283 17 0 chr1 15990494 15990554 -226673799 + MIR SINE MIR 81 141 -67 180 111 0 0 chr1 15990649 15990676 -226673677 + (GAATG)n Simple_repeat Simple_repeat 3 29 0 231 218 55 0 chr1 15990676 15990731 -226673622 - MER112 DNA MER1_type -113 147 90 261 224 30 0 chr1 15990791 15990858 -226673495 - MER112 DNA MER1_type -185 75 7 207 355 233 15 chr1 15991714 15991976 -226672377 - L3b LINE CR1 -159 1424 1106 202 274 51 86 chr1 15992013 15992130 -226672223 - MIR3 SINE MIR -89 119 7 247 278 44 0 chr1 15992267 15992357 -226671996 + MIR SINE MIR 48 141 -121 724 282 31 54 chr1 15992977 15993236 -226671117 - MIR SINE MIR -8 254 2 195 352 148 23 chr1 15993304 15993392 -226670961 + L2 LINE L2 3125 3223 -49 1760 150 21 11 chr1 15993805 15994092 -226670261 - AluJo SINE Alu -17 295 6 350 309 229 5 chr1 15994140 15994328 -226670025 + MIR SINE MIR 27 256 -6 870 104 0 56 chr1 15994544 15994688 -226669665 + AluJo SINE Alu 1 136 -176 932 248 9 14 chr1 15994702 15994916 -226669437 - MIR SINE MIR 0 262 50 509 342 13 6 chr1 15995292 15995450 -226668903 + MIR SINE MIR 8 166 -96 285 349 30 8 chr1 15996098 15996230 -226668123 + L2 LINE L2 3138 3272 0 196 325 26 0 chr1 15996489 15996566 -226667787 - MIR SINE MIR -112 150 72 426 317 6 22 chr1 15996813 15996996 -226667357 + (CA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr1 15997035 15997058 -226667295 + (CA)n Simple_repeat Simple_repeat 2 24 0 2278 84 0 40 chr1 15997278 15997425 -226666928 + AluSx SINE Alu 1 152 -160 2083 100 30 10 chr1 15997425 15997724 -226666629 + AluSq SINE Alu 1 305 -8 2278 84 0 40 chr1 15997724 15997898 -226666455 + AluSx SINE Alu 152 309 -3 712 255 99 5 chr1 15998062 15998274 -226666079 + MIR SINE MIR 13 244 -18 211 244 0 0 chr1 15998376 15998417 -226665936 - L2 LINE L2 -5 3308 3268 590 183 70 0 chr1 15999022 15999137 -226665216 - MIR SINE MIR -56 152 30 187 163 0 93 chr1 16000017 16000060 -226664293 + L2 LINE L2 3272 3310 -3 534 296 36 109 chr1 16000136 16000521 -226663832 - L2 LINE L2 -1 3271 2915 249 125 25 0 chr1 16000781 16000821 -226663532 - Alu SINE Alu -259 44 4 248 294 67 8 chr1 16001065 16001184 -226663169 + MIR3 SINE MIR 34 159 -49 319 268 134 43 chr1 16001464 16001628 -226662725 + HAL1 LINE L1 1121 1299 -1208 198 274 0 16 chr1 16002586 16002648 -226661705 - L3b LINE CR1 -217 1366 1306 2141 127 0 0 chr1 16002784 16003084 -226661269 + AluSx SINE Alu 1 300 -12 481 288 15 0 chr1 16003302 16003434 -226660919 - L2 LINE L2 -11 3302 3169 260 300 77 23 chr1 16003482 16003612 -226660741 + L2 LINE L2 2965 3101 -171 1296 264 95 45 chr1 16003630 16004270 -226660083 - L1ME3 LINE L1 -2 6160 5489 911 147 15 0 chr1 16004411 16004547 -226659806 + AluSg/x SINE Alu 136 273 -39 825 131 31 0 chr1 16004550 16004710 -226659643 + GA-rich Low_complexity Low_complexity 3 167 0 225 325 179 0 chr1 16005452 16005603 -226658750 - L3 LINE CR1 -10 1567 1390 371 270 79 85 chr1 16005606 16005795 -226658558 - MIR SINE MIR 0 262 75 504 273 81 29 chr1 16005978 16006150 -226658203 + MER5A DNA MER1_type 7 187 -2 1600 112 155 4 chr1 16006184 16006442 -226657911 + AluSx SINE Alu 1 297 -15 252 163 20 20 chr1 16007302 16007351 -226657002 - L2 LINE L2 -229 3043 2995 978 236 4 54 chr1 16007583 16007705 -226656648 + MIR SINE MIR 29 135 -127 2206 81 20 3 chr1 16007705 16008000 -226656353 + AluSx SINE Alu 1 300 -12 978 236 4 54 chr1 16008000 16008118 -226656235 + MIR SINE MIR 135 257 -5 219 241 19 0 chr1 16008139 16008193 -226656160 + (CTCA)n Simple_repeat Simple_repeat 2 56 0 542 299 123 0 chr1 16008886 16009073 -226655280 - MIR SINE MIR -12 250 41 560 138 55 9 chr1 16009209 16009318 -226655035 - L1MB3 LINE L1 -68 6115 6002 2119 100 3 13 chr1 16009351 16009677 -226654676 + AluSq SINE Alu 1 296 -17 516 293 29 46 chr1 16009677 16009851 -226654502 + MIR SINE MIR 89 259 -3 207 250 261 0 chr1 16010140 16010232 -226654121 - MIR SINE MIR -119 143 28 218 130 43 43 chr1 16010314 16010360 -226653993 - MIR SINE MIR -117 145 100 536 231 36 107 chr1 16010689 16010767 -226653586 + MER63A DNA MER1_type 1 83 -1605 2318 96 0 3 chr1 16010767 16011080 -226653273 + AluSx SINE Alu 1 312 0 536 231 36 107 chr1 16011080 16011226 -226653127 + MER63A DNA MER1_type 83 209 -1 353 278 41 0 chr1 16011228 16011325 -226653028 + MIR SINE MIR 83 183 -79 2035 125 0 28 chr1 16012949 16013131 -226651222 - AluSg SINE Alu 0 310 139 2327 52 42 0 chr1 16013131 16013420 -226650933 - AluY SINE Alu -10 301 1 2035 125 0 28 chr1 16013420 16013556 -226650797 - AluSg SINE Alu -171 139 1 1869 131 6 51 chr1 16013557 16013734 -226650619 - AluJb SINE Alu -12 300 142 2286 83 0 0 chr1 16013734 16014022 -226650331 - AluY SINE Alu -19 292 5 1869 131 6 51 chr1 16014022 16014158 -226650195 - AluJb SINE Alu -170 142 1 469 251 15 70 chr1 16014345 16014559 -226649794 + MIR SINE MIR 35 234 -28 2173 95 17 0 chr1 16014606 16014900 -226649453 + AluSx SINE Alu 3 301 -11 1169 63 25 13 chr1 16014900 16015058 -226649295 + L1PA7 LINE L1 5991 6150 -4 258 105 0 0 chr1 16015581 16015619 -226648734 + (ATG)n Simple_repeat Simple_repeat 2 39 0 485 312 71 18 chr1 16015677 16015847 -226648506 + MIR SINE MIR 21 199 -63 1855 149 10 0 chr1 16015849 16016160 -226648193 + AluSx SINE Alu 1 314 0 458 301 29 0 chr1 16016363 16016499 -226647854 - MIR SINE MIR -100 162 23 191 353 0 0 chr1 16016764 16016815 -226647538 - L3b LINE CR1 -95 1488 1438 391 297 125 10 chr1 16017022 16017214 -226647139 - MIR SINE MIR -2 260 47 328 336 18 0 chr1 16017677 16017787 -226646566 - MIR3 SINE MIR -87 121 10 417 335 54 12 chr1 16018398 16018565 -226645788 - MIR SINE MIR -14 248 75 2241 100 7 3 chr1 16019502 16019811 -226644542 - AluSq SINE Alu -3 310 1 192 296 0 0 chr1 16020483 16020527 -226643826 - L2 LINE L2 -89 3183 3140 411 277 0 11 chr1 16021073 16021167 -226643186 + MIR SINE MIR 72 164 -98 1712 174 10 16 chr1 16021361 16021665 -226642688 + AluJo SINE Alu 1 302 -10 399 259 6 82 chr1 16021872 16022030 -226642323 + MIR SINE MIR 111 256 -6 248 335 47 0 chr1 16022263 16022405 -226641948 + MIR SINE MIR 32 178 -63 2099 127 0 0 chr1 16022431 16022722 -226641631 + AluSx SINE Alu 1 291 -21 191 125 0 0 chr1 16023162 16023194 -226641159 - MIR3 SINE MIR -15 193 162 201 367 38 0 chr1 16023405 16023484 -226640869 - MIR3 SINE MIR -38 170 89 * 287 339 80 0 chr1 16023473 16023585 -226640768 + MIR SINE MIR 72 192 -70 189 103 0 0 chr1 16023703 16023732 -226640621 - L2 LINE L2 -224 3048 3020 1356 149 44 104 chr1 16023742 16023883 -226640470 + AluJo SINE Alu 1 149 -163 2045 91 0 11 chr1 16023883 16024157 -226640196 + AluSg SINE Alu 2 272 -38 1356 149 44 104 chr1 16024157 16024331 -226640022 + AluJo SINE Alu 149 297 -15 2267 102 0 6 chr1 16025241 16025555 -226638798 + AluSx SINE Alu 1 312 0 1030 136 0 57 chr1 16025555 16025731 -226638622 + AluSg/x SINE Alu 134 299 -13 228 310 0 0 chr1 16026057 16026115 -226638238 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 438 192 217 25 chr1 16026304 16026387 -226637966 - MIR SINE MIR -118 144 78 1290 125 58 31 chr1 16026387 16026503 -226637850 + MER30 DNA MER1_type 1 112 -118 2236 94 0 3 chr1 16026503 16026800 -226637553 + AluSg SINE Alu 1 296 -14 1290 125 58 31 chr1 16026800 16026907 -226637446 + MER30 DNA MER1_type 112 230 0 438 192 217 25 chr1 16026907 16026943 -226637410 - MIR SINE MIR -184 78 2 198 217 43 0 chr1 16027717 16027763 -226636590 + MIR SINE MIR 96 143 -65 198 333 73 0 chr1 16028612 16028708 -226635645 - L2 LINE L2 -9 3304 3202 418 287 129 34 chr1 16029584 16029793 -226634560 - MIR SINE MIR -21 241 13 2016 106 62 0 chr1 16029795 16030087 -226634266 - AluSx SINE Alu -2 310 1 825 123 0 15 chr1 16030089 16030219 -226634134 - AluJo/FLAM SINE Alu -174 128 1 283 356 19 0 chr1 16031415 16031519 -226632834 - L2 LINE L2 -9 3263 3158 719 204 4 0 chr1 16031658 16031909 -226632444 + (TGGA)n Simple_repeat Simple_repeat 1 252 0 403 259 6 6 chr1 16031891 16032053 -226632300 + (TGGG)n Simple_repeat Simple_repeat 1 162 0 * 735 182 11 6 chr1 16032033 16032209 -226632144 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 253 196 0 0 chr1 16032210 16032256 -226632097 + (TGGG)n Simple_repeat Simple_repeat 1 46 0 869 168 6 0 chr1 16032264 16032443 -226631910 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr1 16033323 16033347 -226631006 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 289 293 113 0 chr1 16033845 16033951 -226630402 - MIR3 SINE MIR -26 182 65 411 217 21 19 chr1 16034006 16034132 -226630221 + MIR SINE MIR 101 226 -36 586 294 0 0 chr1 16035004 16035147 -226629206 + MIR SINE MIR 43 185 -77 209 303 15 0 chr1 16036063 16036129 -226628224 - MIR3 SINE MIR -53 155 89 213 239 0 22 chr1 16036551 16036597 -226627756 + MER5B DNA MER1_type 121 165 -13 386 297 0 42 chr1 16036611 16036729 -226627624 - MIR3 SINE MIR -53 155 43 1028 238 40 0 chr1 16036792 16037044 -226627309 - MIR SINE MIR 0 262 1 2003 116 3 20 chr1 16037059 16037362 -226626991 - AluJb SINE Alu -14 298 1 518 279 61 0 chr1 16038490 16038637 -226625716 + MIR SINE MIR 81 236 -26 318 288 72 16 chr1 16038960 16039085 -226625268 + L2 LINE L2 3133 3264 -8 332 266 35 9 chr1 16039185 16039298 -226625055 + MIR3 SINE MIR 87 202 -6 241 284 64 0 chr1 16039465 16039574 -226624779 - MIR SINE MIR -63 145 30 193 318 62 31 chr1 16040350 16040479 -226623874 - MIR3 SINE MIR -75 133 1 194 67 0 33 chr1 16042882 16042912 -226621441 + MIR SINE MIR 119 147 -61 2292 87 0 6 chr1 16043699 16044011 -226620342 + AluSq SINE Alu 1 310 -3 502 294 38 19 chr1 16045808 16045968 -226618385 - MIR SINE MIR -59 203 41 388 318 11 6 chr1 16046636 16046783 -226617570 + (TG)n Simple_repeat Simple_repeat 1 151 -29 1965 116 13 20 chr1 16046783 16047085 -226617268 + AluSx SINE Alu 1 300 -12 388 318 11 6 chr1 16047085 16047116 -226617237 + (TG)n Simple_repeat Simple_repeat 151 180 0 217 244 7 7 chr1 16047143 16047278 -226617075 + (TG)n Simple_repeat Simple_repeat 1 135 0 389 312 110 0 chr1 16047318 16047472 -226616881 + MIR SINE MIR 92 262 0 182 267 126 89 chr1 16047638 16047773 -226616580 - L2 LINE L2 -527 2787 2648 2067 103 27 0 chr1 16047797 16048089 -226616264 + AluSx SINE Alu 1 300 -12 253 246 15 46 chr1 16048089 16048144 -226616209 + L2 LINE L2 3217 3271 -1 1276 149 0 62 chr1 16048929 16049171 -226615182 + AluJb SINE Alu 86 312 0 490 304 15 7 chr1 16049176 16049311 -226615042 - MIR SINE MIR -5 257 122 2410 80 0 0 chr1 16049709 16050011 -226614342 - AluSg SINE Alu -8 302 1 2099 115 0 3 chr1 16050061 16050357 -226613996 - AluSx SINE Alu -17 295 1 1878 90 105 0 chr1 16050372 16050649 -226613704 - AluSc SINE Alu -1 308 3 543 292 105 14 chr1 16050666 16050875 -226613478 - MIR SINE MIR -6 256 29 276 214 0 0 chr1 16051022 16051078 -226613275 + L2 LINE L2 3257 3312 -1 314 342 0 25 chr1 16051149 16051269 -226613084 + MIR SINE MIR 146 262 0 215 311 123 33 chr1 16051360 16051482 -226612871 + L2 LINE L2 3176 3308 -5 21 0 0 0 chr1 16052170 16052191 -226612162 + AT_rich Low_complexity Low_complexity 1 21 0 2167 112 3 10 chr1 16052200 16052514 -226611839 + AluSp SINE Alu 1 312 -1 2031 63 16 94 chr1 16052625 16052943 -226611410 + AluSq SINE Alu 1 293 -20 523 253 47 47 chr1 16052955 16053125 -226611228 + L2 LINE L2 2905 3074 -239 1337 86 6 0 chr1 16053131 16053305 -226611048 + AluSp SINE Alu 1 175 -138 628 0 49 0 chr1 16053311 16053393 -226610960 + (TAAAA)n Simple_repeat Simple_repeat 2 87 0 328 262 91 104 chr1 16053427 16053648 -226610705 + L2 LINE L2 3094 3311 -2 296 314 73 7 chr1 16053690 16053827 -226610526 + MIR SINE MIR 73 218 -44 642 289 77 5 chr1 16053989 16054183 -226610170 - MIR SINE MIR -48 214 7 330 272 173 40 chr1 16054351 16054524 -226609829 + MIR SINE MIR 67 262 0 218 156 22 0 chr1 16054634 16054679 -226609674 + GA-rich Low_complexity Low_complexity 1 46 0 225 0 0 0 chr1 16054992 16055017 -226609336 + (CA)n Simple_repeat Simple_repeat 1 25 0 1301 168 52 4 chr1 16055319 16055569 -226608784 + MER70A LTR ERVL 211 472 0 2032 134 6 22 chr1 16055741 16055915 -226608438 - AluSq SINE Alu -4 309 141 2155 74 36 36 chr1 16055915 16056224 -226608129 - AluSq SINE Alu -4 309 1 2032 134 6 22 chr1 16056224 16056363 -226607990 - AluSq SINE Alu -172 141 1 2312 88 0 3 chr1 16056750 16057057 -226607296 - AluY SINE Alu -1 310 5 1639 150 95 0 chr1 16057057 16057331 -226607022 - AluSx SINE Alu -12 300 1 874 333 94 5 chr1 16057394 16057799 -226606554 - L2 LINE L2 0 3313 2873 522 302 169 17 chr1 16057844 16058145 -226606208 - L2 LINE L2 -713 2601 2255 2254 114 0 3 chr1 16058147 16058453 -226605900 + AluSx SINE Alu 1 305 -7 27 0 0 0 chr1 16058485 16058512 -226605841 + AT_rich Low_complexity Low_complexity 1 27 0 1933 138 10 20 chr1 16059422 16059720 -226604633 + AluJb SINE Alu 1 295 -17 1457 94 6 0 chr1 16059831 16060011 -226604342 - AluSp SINE Alu -131 182 2 231 295 40 96 chr1 16060017 16060392 -226603961 + L2 LINE L2 2699 3053 -219 2356 90 0 0 chr1 16060828 16061118 -226603235 - AluSx SINE Alu -21 291 2 198 103 0 0 chr1 16061171 16061200 -226603153 + (A)n Simple_repeat Simple_repeat 1 29 0 728 160 160 80 chr1 16061364 16061549 -226602804 + AluJo SINE Alu 85 289 -23 2641 68 0 0 chr1 16061549 16061860 -226602493 + AluY SINE Alu 1 311 0 728 160 160 80 chr1 16061860 16061874 -226602479 + AluJo SINE Alu 289 300 -12 187 137 20 20 chr1 16061875 16061926 -226602427 + G-rich Low_complexity Low_complexity 1 51 0 818 159 34 51 chr1 16061942 16062118 -226602235 + FRAM SINE Alu 1 164 -12 851 219 17 6 chr1 16062490 16062668 -226601685 + AluJo SINE Alu 116 295 -17 30 0 0 0 chr1 16062753 16062783 -226601570 + AT_rich Low_complexity Low_complexity 1 30 0 2266 125 0 3 chr1 16062783 16063094 -226601259 + AluSx SINE Alu 1 310 -2 402 234 73 16 chr1 16063144 16063281 -226601072 + MIR SINE MIR 4 146 -62 2436 88 7 0 chr1 16063733 16064038 -226600315 - AluSp SINE Alu -6 307 1 216 0 0 0 chr1 16064040 16064064 -226600289 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1872 122 48 0 chr1 16064064 16064334 -226600019 - AluSx SINE Alu -29 283 1 2582 52 0 16 chr1 16064336 16064675 -226599678 - AluY SINE Alu 0 311 1 2135 120 3 10 chr1 16064677 16064835 -226599518 - AluSc SINE Alu -19 290 133 2326 112 3 3 chr1 16064835 16065147 -226599206 - AluSq SINE Alu -1 312 1 2135 120 3 10 chr1 16065147 16065280 -226599073 - AluSc SINE Alu -176 133 1 1534 170 61 11 chr1 16065291 16065568 -226598785 - AluJo SINE Alu -21 291 1 439 228 48 66 chr1 16065753 16065857 -226598496 - L1MC3 LINE L1 -644 7141 7040 2127 117 0 3 chr1 16065857 16066139 -226598214 - AluSg SINE Alu -29 281 1 439 228 48 66 chr1 16066139 16066201 -226598152 - L1MC3 LINE L1 -745 7040 6978 180 0 0 0 chr1 16066201 16066221 -226598132 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1975 132 4 4 chr1 16066224 16066505 -226597848 - AluSx SINE Alu -31 281 1 482 186 102 17 chr1 16066625 16066743 -226597610 - AluJo SINE Alu -100 212 85 600 120 11 11 chr1 16066761 16066853 -226597500 - AluSq/x SINE Alu -177 135 44 946 220 6 0 chr1 16067727 16067900 -226596453 - AluJo SINE Alu -14 298 125 1365 106 0 6 chr1 16067919 16068099 -226596254 + AluSq SINE Alu 1 179 -134 2471 82 0 19 chr1 16068328 16068644 -226595709 + AluSg SINE Alu 1 310 0 226 203 34 0 chr1 16069731 16069790 -226594563 - L1ME3A LINE L1 -30 6140 6080 2171 121 7 0 chr1 16069816 16070113 -226594240 - AluSx SINE Alu -13 299 1 3076 164 94 38 chr1 16070236 16070969 -226593384 + L1MC3 LINE L1 6088 6861 -924 2253 119 13 0 chr1 16070995 16071298 -226593055 + AluSg SINE Alu 1 307 -3 1904 174 0 10 chr1 16071409 16071719 -226592634 + AluJo SINE Alu 1 307 -5 1870 155 17 10 chr1 16071740 16072037 -226592316 + AluJb SINE Alu 1 299 -13 2409 84 13 0 chr1 16072325 16072623 -226591730 - AluSg SINE Alu -8 302 1 192 273 0 0 chr1 16072887 16072931 -226591422 + L2 LINE L2 3216 3259 -13 863 181 29 23 chr1 16073001 16073172 -226591181 - AluJ SINE Alu -7 305 134 2124 132 37 0 chr1 16073203 16073498 -226590855 - AluSx SINE Alu -6 306 1 1826 154 0 38 chr1 16073523 16073842 -226590511 + AluJo SINE Alu 1 307 -5 2160 201 66 29 chr1 16073898 16074458 -226589895 + L1MC1 LINE L1 4264 4851 -1295 822 171 0 0 chr1 16074458 16074587 -226589766 - AluJ SINE Alu -173 129 1 2160 201 66 29 chr1 16074587 16074644 -226589709 + L1MC1 LINE L1 4851 4904 -1242 858 192 13 0 chr1 16074644 16074800 -226589553 + FAM SINE Alu 1 158 -17 1130 178 13 56 chr1 16074801 16075032 -226589321 - AluJb SINE Alu -7 305 85 2299 116 7 0 chr1 16075047 16075350 -226589003 - AluSx SINE Alu -7 305 1 2376 91 0 38 chr1 16075365 16075684 -226588669 - AluSc SINE Alu -2 307 1 534 284 95 0 chr1 16075699 16075921 -226588432 + L1MC1 LINE L1 4890 5132 -1014 1683 162 0 57 chr1 16075921 16076070 -226588283 + AluJb SINE Alu 1 126 -186 1895 130 9 68 chr1 16076070 16076221 -226588132 + AluSx SINE Alu 1 125 -187 2562 60 3 0 chr1 16076221 16076519 -226587834 + AluY SINE Alu 1 299 -12 1895 130 9 68 chr1 16076519 16076689 -226587664 + AluSx SINE Alu 125 303 -9 1683 162 0 57 chr1 16076689 16076836 -226587517 + AluJb SINE Alu 126 280 -32 776 168 9 106 chr1 16076846 16077020 -226587333 + L1MC1 LINE L1 5127 5276 -870 1104 121 181 107 chr1 16077020 16077301 -226587052 + AluSx SINE Alu 1 302 0 776 168 9 106 chr1 16077301 16077352 -226587001 + L1MC1 LINE L1 5276 5330 -816 974 117 97 0 chr1 16077353 16077498 -226586855 + AluY SINE Alu 136 294 -17 1865 159 19 35 chr1 16077508 16077811 -226586542 + AluJo SINE Alu 1 300 -12 309 51 0 0 chr1 16077811 16077850 -226586503 + (TA)n Simple_repeat Simple_repeat 2 40 0 5633 135 22 31 chr1 16077860 16078384 -226585969 + L1MC1 LINE L1 5323 5851 -482 1627 194 7 17 chr1 16078384 16078678 -226585675 + AluJb SINE Alu 1 291 -21 5633 135 22 31 chr1 16078678 16079095 -226585258 + L1MC1 LINE L1 5851 6256 -77 2107 145 0 0 chr1 16079095 16079399 -226584954 - AluSx SINE Alu -5 307 4 5633 135 22 31 chr1 16079399 16079475 -226584878 + L1MC1 LINE L1 6256 6331 -2 363 320 23 64 chr1 16079572 16079744 -226584609 + HAL1b LINE L1 1 3199 -1183 2142 91 15 0 chr1 16080283 16080557 -226583796 - AluSx SINE Alu -34 278 1 414 299 184 5 chr1 16080686 16080893 -226583460 + MIR SINE MIR 19 262 0 2171 82 0 0 chr1 16080947 16081215 -226583138 + AluY SINE Alu 38 305 -6 2363 109 6 0 chr1 16082196 16082507 -226581846 + AluSp SINE Alu 1 313 0 2548 171 28 2 chr1 16082514 16082971 -226581382 + L1MB2 LINE L1 5580 6048 -123 672 158 118 0 chr1 16083089 16083216 -226581137 - FLAM_C SINE Alu 0 143 2 * 684 143 17 17 chr1 16083216 16083325 -226581028 + AluJo SINE Alu 28 136 -176 1678 184 3 30 chr1 16083332 16083637 -226580716 + AluJb SINE Alu 13 309 -3 844 157 12 6 chr1 16083646 16083812 -226580541 + GA-rich Low_complexity Low_complexity 1 167 0 2591 74 0 0 chr1 16083829 16084140 -226580213 + AluY SINE Alu 1 311 0 3097 172 26 8 chr1 16084143 16084729 -226579624 + L1MD3 LINE L1 7395 7990 -5 2412 113 0 0 chr1 16084784 16085095 -226579258 + AluSx SINE Alu 1 311 -1 1873 147 33 16 chr1 16085115 16085422 -226578931 + AluJb SINE Alu 1 312 0 191 344 39 0 chr1 16085516 16085670 -226578683 - L3 LINE CR1 -235 1342 1183 763 307 144 30 chr1 16085746 16086096 -226578257 + MLT1K LTR MaLR 102 513 -75 2015 119 0 0 chr1 16086105 16086366 -226577987 + AluSq SINE Alu 1 261 -52 1308 197 128 75 chr1 16086366 16086834 -226577519 + MLT1D LTR MaLR 8 503 -2 763 307 144 30 chr1 16086834 16086920 -226577433 + MLT1K LTR MaLR 513 588 0 216 318 76 23 chr1 16087889 16088021 -226576332 - L3b LINE CR1 -101 1482 1344 563 195 64 92 chr1 16088641 16089045 -226575308 + L2 LINE L2 2694 3059 -254 680 209 95 31 chr1 16089144 16089364 -226574989 + MIR SINE MIR 11 245 -17 2250 122 0 3 chr1 16089439 16089733 -226574620 + AluSx SINE Alu 1 293 -19 1069 163 0 0 chr1 16089733 16089899 -226574454 + AluSg/x SINE Alu 135 300 -10 1847 162 7 34 chr1 16089910 16090207 -226574146 + AluJo SINE Alu 1 289 -23 411 237 79 9 chr1 16090416 16090530 -226573823 + MIR SINE MIR 34 155 -107 836 126 0 0 chr1 16091844 16091963 -226572390 - AluSg/x SINE Alu -1 309 191 290 282 91 9 chr1 16092041 16092151 -226572202 + L2 LINE L2 3182 3300 -13 343 306 124 41 chr1 16092560 16092972 -226571381 + L2 LINE L2 2826 3271 -1 932 116 0 0 chr1 16093015 16093144 -226571209 - FLAM_C SINE Alu -4 129 1 228 311 113 19 chr1 16093312 16093418 -226570935 + MIR SINE MIR 141 256 -6 224 293 0 30 chr1 16095504 16095603 -226568750 + C-rich Low_complexity Low_complexity 5 100 0 34 24 0 0 chr1 16095883 16095924 -226568429 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr1 16096064 16096086 -226568267 + GC_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr1 16096314 16096338 -226568015 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 303 273 8 61 chr1 16097371 16097503 -226566850 + MIR3 SINE MIR 15 139 -69 813 251 144 0 chr1 16098205 16098420 -226565933 - MIR SINE MIR -3 259 14 462 255 87 43 chr1 16099592 16099776 -226564577 - L2 LINE L2 -61 3211 3020 384 205 16 118 chr1 16100870 16100997 -226563356 + MIR SINE MIR 30 143 -65 541 216 52 0 chr1 16102439 16102555 -226561798 - MIR SINE MIR -13 249 128 636 155 28 70 chr1 16102557 16102691 -226561662 + MER2 DNA MER2_type 1 130 -215 2020 146 3 7 chr1 16102691 16103039 -226561314 - AluSx SINE Alu 0 312 1 1772 161 0 21 chr1 16103086 16103371 -226560982 - AluJb SINE Alu -32 280 2 482 250 82 10 chr1 16103372 16103580 -226560773 + MER2 DNA MER2_type 122 344 -1 389 244 205 0 chr1 16103598 16103725 -226560628 - MIR SINE MIR -63 199 47 1085 83 8 0 chr1 16103728 16103861 -226560492 + AluSq/x SINE Alu 1 134 -178 2326 102 0 25 chr1 16103864 16104178 -226560175 + AluSg SINE Alu 3 308 -2 2437 57 3 0 chr1 16104398 16104723 -226559630 - AluSp SINE Alu 0 326 1 536 305 49 0 chr1 16105637 16105801 -226558552 - MIR SINE MIR -13 249 78 332 209 124 57 chr1 16105934 16106039 -226558314 - MIR SINE MIR -13 249 138 418 289 87 7 chr1 16107559 16107708 -226556645 - MIR SINE MIR -85 177 17 405 244 152 0 chr1 16107814 16107974 -226556379 - MIR SINE MIR -62 146 12 1251 93 0 0 chr1 16109504 16109654 -226554699 + AluSq/x SINE Alu 1 150 -162 216 341 33 0 chr1 16110298 16110389 -226553964 + (TGGA)n Simple_repeat Simple_repeat 1 94 0 234 339 0 0 chr1 16110462 16110524 -226553829 + (TGGG)n Simple_repeat Simple_repeat 4 65 0 525 188 20 0 chr1 16110555 16110704 -226553649 + (TGGA)n Simple_repeat Simple_repeat 2 153 0 212 100 25 0 chr1 16110745 16110785 -226553568 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 186 103 0 0 chr1 16110835 16110864 -226553489 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 206 152 0 22 chr1 16110909 16110955 -226553398 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 352 297 125 10 chr1 16110957 16111245 -226553108 - L2 LINE L2 0 3313 2933 2198 136 7 0 chr1 16111261 16111570 -226552783 - AluSx SINE Alu 0 312 2 1025 131 0 0 chr1 16111571 16111708 -226552645 - AluSq/x SINE Alu -175 137 1 28 38 0 19 chr1 16111713 16111735 -226552618 + AT_rich Low_complexity Low_complexity 1 22 -30 2067 140 0 23 chr1 16111735 16111892 -226552461 - AluSx SINE Alu -19 293 134 378 0 0 0 chr1 16111892 16111934 -226552419 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1912 100 81 0 chr1 16111934 16112193 -226552160 - AluSc SINE Alu -29 280 1 2067 140 0 23 chr1 16112193 16112334 -226552019 - AluSx SINE Alu -176 136 1 28 38 0 19 chr1 16112334 16112364 -226551989 + AT_rich Low_complexity Low_complexity 22 52 0 1956 153 3 3 chr1 16112364 16112651 -226551702 - AluJo SINE Alu -23 289 3 207 333 16 0 chr1 16112653 16112716 -226551637 + MER91B DNA MER1_type 1 64 -126 301 164 173 19 chr1 16112723 16112844 -226551509 + LTR50 LTR ERVL 388 770 -9 943 259 132 45 chr1 16112906 16113196 -226551157 - L2 LINE L2 -4 3309 2977 2277 109 0 16 chr1 16113196 16113499 -226550854 + AluSx SINE Alu 1 298 -14 943 259 132 45 chr1 16113499 16113586 -226550767 - L2 LINE L2 -336 2977 2899 414 259 143 79 chr1 16113619 16113885 -226550468 - L2 LINE L2 -495 2819 2537 180 152 0 0 chr1 16113910 16113943 -226550410 + (TGGG)n Simple_repeat Simple_repeat 2 34 0 2363 80 27 0 chr1 16116234 16116534 -226547819 - AluSx SINE Alu -4 308 1 293 275 50 42 chr1 16116691 16116811 -226547542 - MIR SINE MIR -14 248 128 483 256 107 18 chr1 16117652 16117820 -226546533 - MIR SINE MIR -1 261 79 2452 100 0 0 chr1 16117980 16118289 -226546064 - AluSx SINE Alu -1 311 3 991 145 180 30 chr1 16118291 16118491 -226545862 + AluJo SINE Alu 67 296 -16 450 260 0 0 chr1 16118500 16118596 -226545757 - MER45 DNA AcHobo -79 99 4 2150 128 13 3 chr1 16120026 16120330 -226544023 + AluSx SINE Alu 1 307 -5 721 280 85 19 chr1 16120356 16120731 -226543622 + MLT1J1 LTR MaLR 47 446 0 243 247 54 11 chr1 16121664 16121757 -226542596 - MIR3 SINE MIR -25 183 87 181 351 0 0 chr1 16122113 16122170 -226542183 - L2 LINE L2 -79 3193 3137 328 318 57 36 chr1 16122336 16122528 -226541825 - MIR SINE MIR -7 255 60 1965 132 110 27 chr1 16122778 16123096 -226541257 + MSTD LTR MaLR 1 354 -42 2238 105 7 13 chr1 16123096 16123401 -226540952 + AluSx SINE Alu 1 303 -9 1965 132 110 27 chr1 16123401 16123447 -226540906 + MSTD LTR MaLR 354 395 -1 847 160 0 8 chr1 16123526 16123657 -226540696 - FLAM_C SINE Alu -13 130 1 2407 65 31 0 chr1 16123709 16124002 -226540351 - AluSp SINE Alu -11 302 1 594 316 53 16 chr1 16124379 16124623 -226539730 - MIR SINE MIR 0 262 10 2348 91 20 0 chr1 16124656 16124953 -226539400 - AluSq SINE Alu -10 303 1 21 57 0 0 chr1 16124965 16125000 -226539353 + AT_rich Low_complexity Low_complexity 1 35 0 185 308 13 13 chr1 16125265 16125343 -226539010 + MIR SINE MIR 171 248 -14 204 295 16 0 chr1 16126400 16126461 -226537892 + MIR SINE MIR 108 169 -93 192 301 44 44 chr1 16126523 16126636 -226537717 - MIR3 SINE MIR -26 182 70 180 0 0 0 chr1 16126652 16126672 -226537681 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 253 179 125 0 chr1 16126690 16126746 -226537607 - L2 LINE L2 -60 3212 3150 358 228 106 90 chr1 16126982 16127153 -226537200 - MIR SINE MIR -33 229 49 2120 138 10 16 chr1 16127153 16127465 -226536888 + AluJb SINE Alu 1 310 -2 358 228 106 90 chr1 16127465 16127511 -226536842 - MIR SINE MIR -213 49 5 900 144 8 0 chr1 16128011 16128143 -226536210 + AluJb SINE Alu 1 133 -179 2105 94 8 0 chr1 16128146 16128413 -226535940 + AluSx SINE Alu 1 269 -43 2029 84 16 53 chr1 16128423 16128490 -226535863 + MER4A LTR ERV1 356 424 -240 2207 100 0 30 chr1 16128490 16128791 -226535562 - AluSc SINE Alu -17 292 1 2029 84 16 53 chr1 16128791 16129044 -226535309 + MER4A LTR ERV1 424 664 0 1186 173 88 22 chr1 16129135 16129407 -226534946 - MLT1B LTR MaLR 0 390 101 1736 164 3 33 chr1 16129407 16129575 -226534778 - AluJb SINE Alu -13 299 142 2464 89 0 10 chr1 16129575 16129889 -226534464 - AluSq SINE Alu 0 313 3 1736 164 3 33 chr1 16129889 16130024 -226534329 - AluJb SINE Alu -170 142 5 189 0 0 0 chr1 16130037 16130058 -226534295 + (T)n Simple_repeat Simple_repeat 1 21 0 525 133 95 48 chr1 16130447 16130552 -226533801 - MLT1B LTR MaLR -280 110 1 2482 90 0 0 chr1 16130808 16131107 -226533246 - AluSc SINE Alu -10 299 1 207 250 94 0 chr1 16131541 16131605 -226532748 + L2 LINE L2 1887 1956 -1358 1274 237 30 46 chr1 16132382 16132753 -226531600 + MLT1A1 LTR MaLR 1 365 0 256 303 134 2 chr1 16133625 16133765 -226530588 - MIR SINE MIR -65 143 25 227 310 65 58 chr1 16133770 16133925 -226530428 - L3 LINE CR1 -8 1569 1414 2100 136 10 0 chr1 16134297 16134592 -226529761 - AluSx SINE Alu -14 298 1 345 262 123 0 chr1 16134677 16134799 -226529554 - MIR SINE MIR -25 237 101 1797 157 17 11 chr1 16135192 16135479 -226528874 - AluJb SINE Alu -16 296 8 2346 92 7 0 chr1 16135488 16135780 -226528573 - AluSg SINE Alu -16 294 1 211 273 15 0 chr1 16136380 16136446 -226527907 + GA-rich Low_complexity Low_complexity 5 71 0 183 184 0 0 chr1 16138761 16138799 -226525554 + A-rich Low_complexity Low_complexity 1 38 0 206 32 32 0 chr1 16139447 16139478 -226524875 + (TA)n Simple_repeat Simple_repeat 1 32 0 264 243 68 68 chr1 16140808 16140911 -226523442 - L2 LINE L2 -2 3270 3168 197 365 77 6 chr1 16142916 16143072 -226521281 + MIR SINE MIR 77 243 -19 200 83 0 28 chr1 16143898 16143934 -226520419 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2057 128 14 0 chr1 16144316 16144597 -226519756 - AluSx SINE Alu -11 301 17 603 211 61 14 chr1 16145958 16146105 -226518248 + MIR SINE MIR 97 250 -12 2255 120 0 0 chr1 16146662 16146954 -226517399 - AluSx SINE Alu -15 297 6 1941 181 7 0 chr1 16147325 16147635 -226516718 - AluJo SINE Alu 0 312 1 1788 180 0 10 chr1 16147713 16148018 -226516335 - AluJo SINE Alu -10 302 1 2230 137 0 6 chr1 16148461 16148774 -226515579 + AluSx SINE Alu 2 312 0 460 227 0 0 chr1 16148908 16148996 -226515357 - MER3 DNA MER1_type -118 91 4 614 201 70 100 chr1 16149139 16149188 -226515165 - MIR SINE MIR -2 260 211 2309 107 3 3 chr1 16149188 16149487 -226514866 - AluSx SINE Alu -13 299 1 614 201 70 100 chr1 16149487 16149666 -226514687 - MIR SINE MIR -51 211 39 1684 176 0 35 chr1 16149667 16149980 -226514373 - AluJo SINE Alu -5 307 6 2261 85 3 29 chr1 16150683 16150990 -226513363 - AluY SINE Alu -12 299 1 203 161 0 0 chr1 16151150 16151181 -226513172 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 650 193 8 0 chr1 16151181 16151300 -226513053 - FLAM_A SINE Alu -13 120 1 1442 146 77 0 chr1 16151407 16151627 -226512726 + AluSx SINE Alu 5 241 -71 1802 144 0 43 chr1 16151679 16151978 -226512375 - AluJb SINE Alu -15 297 12 1964 78 78 8 chr1 16152159 16152427 -226511926 + AluY SINE Alu 1 287 -24 1981 93 4 7 chr1 16152462 16152731 -226511622 + AluSq SINE Alu 45 312 -1 221 0 0 33 chr1 16152735 16152765 -226511588 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2300 119 0 0 chr1 16152786 16153089 -226511264 - AluSq SINE Alu -10 303 1 2275 84 11 0 chr1 16154083 16154369 -226509984 - AluSp SINE Alu -24 289 1 303 285 46 15 chr1 16154434 16154564 -226509789 - MIR SINE MIR -4 258 125 432 209 22 36 chr1 16155148 16155287 -226509066 - LTR37B LTR ERV1 -2 466 330 403 184 0 15 chr1 16155313 16155389 -226508964 + FRAM/FAM SINE Alu 1 67 -99 1526 104 45 0 chr1 16157660 16157782 -226506571 + AluSp SINE Alu 1 137 -176 204 97 0 0 chr1 16157782 16157813 -226506540 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1526 104 45 0 chr1 16157813 16157892 -226506461 + AluSp SINE Alu 137 211 -102 1497 93 5 16 chr1 16157892 16158086 -226506267 - AluSg SINE Alu -117 193 2 1627 154 61 11 chr1 16158086 16158365 -226505988 - AluSx SINE Alu -17 295 3 647 165 218 0 chr1 16158367 16158500 -226505853 - AluSg/x SINE Alu -16 296 135 2278 84 3 0 chr1 16158507 16158803 -226505550 - AluSp SINE Alu -16 297 1 1524 176 22 4 chr1 16158812 16159134 -226505219 - AluSx SINE Alu 0 327 1 1030 109 142 6 chr1 16159135 16159318 -226505035 - MSTC LTR MaLR -220 208 1 922 143 0 0 chr1 16159535 16159699 -226504654 + FLAM_C SINE Alu 1 164 0 369 0 0 0 chr1 16159730 16159771 -226504582 + (CA)n Simple_repeat Simple_repeat 2 42 0 634 256 184 40 chr1 16159782 16160199 -226504154 - L2 LINE L2 -19 3294 2791 480 48 0 0 chr1 16160218 16160281 -226504072 + (TG)n Simple_repeat Simple_repeat 2 64 0 2040 91 0 0 chr1 16160294 16160559 -226503794 - AluSq SINE Alu -48 265 1 198 321 35 22 chr1 16160565 16160682 -226503671 + L2 LINE L2 2825 2937 -335 2086 97 3 53 chr1 16160835 16161154 -226503199 + AluSx SINE Alu 1 303 -9 2277 73 3 0 chr1 16161247 16161535 -226502818 - AluSp SINE Alu -22 291 3 197 257 275 18 chr1 16162073 16162182 -226502171 - MIR SINE MIR -62 200 64 1567 223 43 80 chr1 16162459 16162577 -226501776 + L1ME3 LINE L1 5656 5777 -385 1911 135 7 7 chr1 16162577 16162873 -226501480 + AluJb SINE Alu 1 296 -16 1567 223 43 80 chr1 16162873 16163041 -226501312 + L1ME3 LINE L1 5777 5950 -212 1463 175 18 11 chr1 16163041 16163315 -226501038 + AluJo SINE Alu 36 311 -1 1567 223 43 80 chr1 16163315 16163543 -226500810 + L1ME3 LINE L1 5950 6152 -10 2137 103 3 3 chr1 16163567 16163868 -226500485 - AluSc SINE Alu -8 301 1 1552 193 0 22 chr1 16164317 16164633 -226499720 + AluJo SINE Alu 4 312 0 1335 126 192 12 chr1 16164705 16164960 -226499393 + AluSx SINE Alu 1 301 -11 2383 71 3 0 chr1 16165078 16165388 -226498965 + AluY SINE Alu 1 311 0 218 282 14 14 chr1 16165946 16166017 -226498336 + L3b LINE CR1 1174 1244 -339 22 0 0 0 chr1 16166390 16166412 -226497941 + AT_rich Low_complexity Low_complexity 1 22 0 2146 121 3 0 chr1 16166421 16166726 -226497627 + AluSx SINE Alu 1 306 -6 1859 147 0 3 chr1 16166737 16167030 -226497323 + AluJb SINE Alu 1 292 -20 2400 70 3 3 chr1 16167053 16167366 -226496987 + AluSp SINE Alu 1 313 0 2172 81 10 23 chr1 16167744 16168054 -226496299 - AluSp SINE Alu -7 306 1 706 177 39 8 chr1 16168301 16168431 -226495922 + FAM SINE Alu 40 173 -12 2180 153 36 122 chr1 16168725 16168822 -226495531 + L1MC3 LINE L1 7197 7301 -484 1983 137 0 3 chr1 16168822 16169121 -226495232 - AluSx SINE Alu -9 303 6 2180 153 36 122 chr1 16169121 16169467 -226494886 + L1MC3 LINE L1 7301 7634 -151 365 40 40 0 chr1 16169467 16169517 -226494836 + MADE1 DNA Mariner 29 80 0 2180 153 36 122 chr1 16169517 16169603 -226494750 + L1MC3 LINE L1 7634 7726 -59 822 168 13 0 chr1 16169625 16169780 -226494573 + AluJb SINE Alu 154 310 -2 625 254 30 119 chr1 16169792 16169936 -226494417 + MIR SINE MIR 1 112 -150 2288 82 3 3 chr1 16169936 16170240 -226494113 - AluSp SINE Alu -9 304 1 625 254 30 119 chr1 16170240 16170363 -226493990 + MIR SINE MIR 112 244 -18 969 182 6 0 chr1 16170437 16170618 -226493735 - AluSg/x SINE Alu -1 311 130 1793 97 11 128 chr1 16170627 16170978 -226493375 - AluSx SINE Alu -2 310 1 2354 90 0 0 chr1 16171194 16171504 -226492849 - AluSx SINE Alu -2 310 1 713 195 0 0 chr1 16171541 16171659 -226492694 + FLAM_C SINE Alu 1 118 -15 217 291 9 82 chr1 16171665 16171677 -226492676 - MER5A DNA MER1_type -50 139 128 2299 84 0 0 chr1 16171677 16171975 -226492378 + AluSx SINE Alu 1 298 -14 217 291 9 82 chr1 16171975 16172072 -226492281 - MER5A DNA MER1_type -61 128 38 226 350 26 51 chr1 16172109 16172226 -226492127 - MIR3 SINE MIR -48 160 47 2296 80 7 0 chr1 16172473 16172773 -226491580 - AluSg1 SINE Alu -7 302 1 3399 258 153 37 chr1 16173248 16173528 -226490825 + L2 LINE L2 1395 1641 -1672 1797 122 7 24 chr1 16173528 16173664 -226490689 + AluSg SINE Alu 1 138 -177 2179 100 3 7 chr1 16173664 16173974 -226490379 + AluSp SINE Alu 1 309 -4 1797 122 7 24 chr1 16173974 16174157 -226490196 + AluSg SINE Alu 138 315 0 3399 258 153 37 chr1 16174157 16174283 -226490070 + L2 LINE L2 1641 1751 -1562 2036 91 0 0 chr1 16174283 16174546 -226489807 - AluSg SINE Alu -43 267 5 3399 258 153 37 chr1 16174546 16174836 -226489517 + L2 LINE L2 1751 2006 -1307 1267 161 74 74 chr1 16174836 16175147 -226489206 - AluJo SINE Alu -1 311 1 3399 258 153 37 chr1 16175147 16175216 -226489137 + L2 LINE L2 2006 2066 -1247 1937 128 54 35 chr1 16175216 16175584 -226488769 - THE1C LTR MaLR 0 375 1 3399 258 153 37 chr1 16175584 16176521 -226487832 + L2 LINE L2 2066 3313 0 686 125 6 150 chr1 16176567 16176727 -226487626 - FLAM_C SINE Alu -5 138 2 741 120 103 0 chr1 16176781 16176898 -226487455 + AluSq/x SINE Alu 2 130 -183 1379 109 35 5 chr1 16176927 16177136 -226487217 + AluSq SINE Alu 87 288 -328 2127 94 27 0 chr1 16177136 16177433 -226486920 + AluSc SINE Alu 1 305 -4 1379 109 35 5 chr1 16177433 16177451 -226486902 + AluSq SINE Alu 288 616 0 212 353 52 29 chr1 16177518 16177654 -226486699 + L2 LINE L2 2376 2514 -800 1976 147 0 0 chr1 16177654 16177953 -226486400 + AluSx SINE Alu 1 299 -13 1259 195 10 53 chr1 16178100 16178403 -226485950 + AluJo SINE Alu 9 298 -14 187 26 0 79 chr1 16178645 16178683 -226485670 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1120 134 102 5 chr1 16178714 16178900 -226485453 + AluJo SINE Alu 86 289 -23 274 211 263 18 chr1 16178904 16179018 -226485335 + L2 LINE L2 3079 3220 -93 1432 179 53 68 chr1 16179228 16179388 -226484965 + MLT1A2 LTR MaLR 1 162 -212 2087 104 35 0 chr1 16179388 16179676 -226484677 + AluSx SINE Alu 1 298 -14 1432 179 53 68 chr1 16179676 16179895 -226484458 + MLT1A2 LTR MaLR 162 374 0 1773 165 7 3 chr1 16180349 16180658 -226483695 - AluSx SINE Alu 0 312 3 1865 142 3 3 chr1 16180662 16180950 -226483403 - AluJo SINE Alu -24 288 1 198 191 0 0 chr1 16181248 16181290 -226483063 + CT-rich Low_complexity Low_complexity 3 44 0 1226 163 117 32 chr1 16181292 16181575 -226482778 - AluJb SINE Alu -5 307 1 520 204 0 0 chr1 16181890 16181983 -226482370 + AluJ/FRAM SINE Alu 216 308 -4 1703 100 104 0 chr1 16182139 16182399 -226481954 - AluSx SINE Alu -25 287 1 189 0 0 0 chr1 16182405 16182426 -226481927 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 353 333 0 20 chr1 16182811 16182913 -226481440 - MIR SINE MIR -90 118 19 2327 90 0 7 chr1 16184361 16184671 -226479682 - AluSx SINE Alu -4 308 1 198 71 0 0 chr1 16185232 16185260 -226479093 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2465 71 0 0 chr1 16185348 16185658 -226478695 + AluSg SINE Alu 1 310 0 1920 130 3 20 chr1 16185921 16186222 -226478131 - AluSx SINE Alu -16 296 1 2252 72 0 20 chr1 16186558 16186864 -226477489 + AluY SINE Alu 1 300 -11 2162 97 3 3 chr1 16186922 16187222 -226477131 + AluSx SINE Alu 1 300 -12 2282 88 0 0 chr1 16187492 16187788 -226476565 - AluSx SINE Alu -16 296 1 2215 98 3 3 chr1 16187983 16188289 -226476064 - AluSg SINE Alu -4 306 1 2214 84 0 3 chr1 16188634 16188921 -226475432 - AluSc SINE Alu -23 286 1 2150 105 3 3 chr1 16189872 16190177 -226474176 - AluSx SINE Alu -7 305 1 1986 131 0 25 chr1 16190359 16190679 -226473674 + AluSx SINE Alu 1 312 0 26 30 0 0 chr1 16190775 16190808 -226473545 + AT_rich Low_complexity Low_complexity 1 33 0 372 175 0 0 chr1 16190811 16190868 -226473485 - AluJ/FLAM SINE Alu -202 100 44 228 313 36 36 chr1 16190879 16190991 -226473362 - MIR SINE MIR -56 206 95 537 210 36 58 chr1 16191240 16191295 -226473058 + AluJo SINE Alu 2 57 -255 1821 136 53 56 chr1 16191295 16191492 -226472861 - THE1C LTR MaLR 0 375 178 2185 98 0 0 chr1 16191492 16191788 -226472565 - AluSx SINE Alu -16 296 1 1821 136 53 56 chr1 16191788 16191965 -226472388 - THE1C LTR MaLR -197 178 2 537 210 36 58 chr1 16191965 16192047 -226472306 + AluJo SINE Alu 57 136 -176 365 259 46 0 chr1 16192271 16192379 -226471974 - MER20 DNA MER1_type 0 219 107 2185 87 0 42 chr1 16192547 16192722 -226471631 - AluSq SINE Alu -14 299 141 1484 89 9 36 chr1 16192722 16192947 -226471406 - AluY SINE Alu -10 301 83 2185 87 0 42 chr1 16192947 16193083 -226471270 - AluSq SINE Alu -172 141 1 2066 115 7 13 chr1 16193092 16193397 -226470956 - AluSq SINE Alu -10 303 1 2152 99 14 0 chr1 16193665 16193957 -226470396 + AluSx SINE Alu 1 296 -16 1743 169 0 10 chr1 16194081 16194382 -226469971 + AluJo SINE Alu 1 298 -14 1713 155 17 10 chr1 16194412 16194709 -226469644 + AluJb SINE Alu 1 299 -13 2252 84 13 0 chr1 16194997 16195295 -226469058 - AluSg SINE Alu -8 302 1 209 273 0 0 chr1 16195559 16195603 -226468750 + L2 LINE L2 3216 3259 -13 853 181 29 23 chr1 16195673 16195844 -226468509 - AluJ SINE Alu -7 305 134 1967 132 37 0 chr1 16195875 16196170 -226468183 - AluSx SINE Alu -6 306 1 1666 154 0 38 chr1 16196195 16196514 -226467839 + AluJo SINE Alu 1 307 -5 2259 197 66 29 chr1 16196570 16197130 -226467223 + L1MC1 LINE L1 4264 4851 -1295 852 155 0 16 chr1 16197130 16197259 -226467094 - AluJ SINE Alu -175 127 1 2259 197 66 29 chr1 16197259 16197316 -226467037 + L1MC1 LINE L1 4851 4904 -1242 896 192 13 0 chr1 16197316 16197472 -226466881 + FAM SINE Alu 1 158 -17 1017 178 13 56 chr1 16197473 16197704 -226466649 - AluJb SINE Alu -7 305 85 2133 116 7 0 chr1 16197719 16198021 -226466332 - AluSx SINE Alu -8 304 1 2218 91 0 38 chr1 16198036 16198355 -226465998 - AluSc SINE Alu -2 307 1 557 267 104 0 chr1 16198371 16198592 -226465761 + L1MC1 LINE L1 4889 5132 -1014 1532 162 0 57 chr1 16198592 16198741 -226465612 + AluJb SINE Alu 1 126 -186 1737 130 9 68 chr1 16198741 16198892 -226465461 + AluSx SINE Alu 1 125 -187 2406 60 3 0 chr1 16198892 16199190 -226465163 + AluY SINE Alu 1 299 -12 1737 130 9 68 chr1 16199190 16199360 -226464993 + AluSx SINE Alu 125 303 -9 1532 162 0 57 chr1 16199360 16199507 -226464846 + AluJb SINE Alu 126 280 -32 818 158 9 108 chr1 16199517 16199691 -226464662 + L1MC1 LINE L1 5127 5276 -870 1181 121 181 107 chr1 16199691 16199972 -226464381 + AluSx SINE Alu 1 302 0 818 158 9 108 chr1 16199972 16200019 -226464334 + L1MC1 LINE L1 5276 5326 -820 896 117 97 0 chr1 16200024 16200169 -226464184 + AluY SINE Alu 136 294 -17 1711 159 19 35 chr1 16200179 16200482 -226463871 + AluJo SINE Alu 1 300 -12 309 51 0 0 chr1 16200482 16200521 -226463832 + (TA)n Simple_repeat Simple_repeat 1 39 0 5910 135 21 34 chr1 16200531 16201055 -226463298 + L1MC1 LINE L1 5323 5852 -481 1480 192 7 17 chr1 16201055 16201346 -226463007 + AluJb SINE Alu 1 288 -24 5910 135 21 34 chr1 16201346 16201766 -226462587 + L1MC1 LINE L1 5852 6256 -77 1950 145 0 0 chr1 16201766 16202070 -226462283 - AluSx SINE Alu -5 307 4 5910 135 21 34 chr1 16202070 16202146 -226462207 + L1MC1 LINE L1 6256 6331 -2 348 320 23 64 chr1 16202243 16202415 -226461938 + HAL1b LINE L1 1 3199 -1183 1995 91 15 0 chr1 16202954 16203228 -226461125 - AluSx SINE Alu -34 278 1 468 290 188 10 chr1 16203357 16203564 -226460789 + MIR SINE MIR 19 262 0 2029 82 0 0 chr1 16203618 16203886 -226460467 + AluY SINE Alu 38 305 -6 2234 103 6 0 chr1 16204867 16205178 -226459175 + AluSp SINE Alu 1 313 0 1406 130 10 5 chr1 16205223 16205430 -226458923 + MER75 DNA T2_type 1 208 -306 1645 119 4 0 chr1 16205431 16205667 -226458686 + AluSx SINE Alu 1 237 -75 398 326 91 11 chr1 16205875 16206050 -226458303 - MIR3 SINE MIR -4 204 16 754 253 88 4 chr1 16206102 16206351 -226458002 + L1MC4a LINE L1 5742 6011 -1797 2116 108 0 25 chr1 16206432 16206747 -226457606 + AluSg SINE Alu 1 307 -3 2236 83 3 3 chr1 16206801 16207101 -226457252 + AluSp SINE Alu 1 300 -13 1688 176 10 20 chr1 16207107 16207227 -226457126 + AluJb SINE Alu 1 121 -191 2549 76 3 0 chr1 16207227 16207530 -226456823 + AluSp SINE Alu 1 304 -9 1688 176 10 20 chr1 16207530 16207711 -226456642 + AluJb SINE Alu 121 299 -13 1145 108 48 0 chr1 16207795 16207981 -226456372 + MSTB2 LTR MaLR 1 195 -262 643 119 28 0 chr1 16208093 16208202 -226456151 + AluSg/x SINE Alu 200 311 -1 1999 139 0 17 chr1 16208205 16208522 -226455831 + AluJb SINE Alu 2 313 0 1199 234 134 45 chr1 16208745 16209215 -226455138 + MLT1K LTR MaLR 73 584 -4 228 309 36 18 chr1 16209684 16209794 -226454559 - MIR SINE MIR -76 132 20 435 245 9 0 chr1 16209860 16209966 -226454387 + MER103 DNA DNA 2 108 -58 2414 97 0 0 chr1 16210138 16210480 -226453873 - AluSx SINE Alu 0 342 1 370 293 93 21 chr1 16210947 16211087 -226453266 - MIR SINE MIR -78 184 35 4594 159 9 31 chr1 16211891 16212333 -226452020 - L1MB8 LINE L1 0 6178 5728 1900 156 9 40 chr1 16212333 16212654 -226451699 - AluJo SINE Alu -1 311 1 4594 159 9 31 chr1 16212654 16212910 -226451443 - L1MB8 LINE L1 -450 5728 5499 1776 179 4 0 chr1 16212910 16213211 -226451142 - AluJo SINE Alu 0 307 6 4594 159 9 31 chr1 16213211 16213384 -226450969 - L1MB8 LINE L1 -679 5499 5324 1693 144 0 0 chr1 16213384 16213627 -226450726 - AluSx SINE Alu -20 292 50 245 206 32 16 chr1 16214557 16214620 -226449733 + MER5B DNA MER1_type 1 64 -114 547 238 8 0 chr1 16214659 16214781 -226449572 - FLAM_C SINE Alu -19 124 2 2062 133 0 0 chr1 16214794 16215080 -226449273 - AluSx SINE Alu 0 312 27 912 130 34 7 chr1 16215090 16215236 -226449117 - FRAM SINE Alu -2 174 25 264 143 0 0 chr1 16215240 16215282 -226449071 + FRAM/FAM SINE Alu 32 73 -102 2127 113 10 10 chr1 16215407 16215707 -226448646 - AluSx SINE Alu -12 300 1 2441 79 3 19 chr1 16215863 16216178 -226448175 - AluSp SINE Alu -3 310 1 1642 188 10 7 chr1 16216283 16216581 -226447772 - AluJo SINE Alu -13 299 1 2484 131 58 94 chr1 16216712 16216880 -226447473 - MER4B LTR ERV1 -36 574 402 2180 118 7 0 chr1 16216880 16217176 -226447177 + AluSx SINE Alu 1 298 -14 2013 93 0 73 chr1 16217176 16217523 -226446830 + AluSg SINE Alu 1 325 0 2484 131 58 94 chr1 16217523 16217636 -226446717 - MER4B LTR ERV1 -207 403 288 1847 166 0 7 chr1 16217636 16217932 -226446421 + AluJb SINE Alu 1 294 -18 2484 131 58 94 chr1 16217932 16218213 -226446140 - MER4B LTR ERV1 -322 288 29 1795 122 8 0 chr1 16218313 16218590 -226445763 + AluSx SINE Alu 35 313 0 1083 95 0 0 chr1 16218618 16218755 -226445598 + AluSq/x SINE Alu 1 137 -176 2353 90 3 16 chr1 16218756 16219068 -226445285 + AluY SINE Alu 4 311 0 2232 98 3 16 chr1 16219463 16219770 -226444583 + AluSg SINE Alu 2 304 -6 212 289 0 0 chr1 16220282 16220334 -226444019 + L2 LINE L2 3030 3081 -191 2207 105 17 3 chr1 16220624 16220919 -226443434 + AluSq SINE Alu 1 299 -14 1466 121 77 73 chr1 16221510 16221782 -226442571 + AluSx SINE Alu 1 273 -39 612 40 0 0 chr1 16221789 16221864 -226442489 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr1 16223557 16223588 -226440765 + GC_rich Low_complexity Low_complexity 1 31 0 398 216 74 19 chr1 16223957 16224073 -226440280 - MIR SINE MIR -62 146 59 1060 135 0 0 chr1 16224205 16224346 -226440007 + AluJb SINE Alu 136 276 -36 467 296 122 14 chr1 16224681 16224894 -226439459 + MLT1K LTR MaLR 306 541 -47 1075 81 0 0 chr1 16224903 16225039 -226439314 - AluSg/x SINE Alu 0 310 175 2268 100 0 7 chr1 16225628 16225927 -226438426 + AluSx SINE Alu 15 311 -1 1670 190 28 0 chr1 16225965 16226254 -226438099 + AluJb SINE Alu 5 301 -11 529 226 10 0 chr1 16226257 16226359 -226437994 - MER45 DNA AcHobo -937 103 1 1412 143 0 28 chr1 16226647 16226863 -226437490 + AluSx SINE Alu 2 211 -101 761 188 0 83 chr1 16226864 16227082 -226437271 + AluJo SINE Alu 78 277 -35 289 248 239 0 chr1 16227296 16227409 -226436944 + MIR SINE MIR 98 237 -25 1137 157 0 0 chr1 16227538 16227710 -226436643 - AluSg/x SINE Alu -4 306 135 1583 149 33 83 chr1 16227740 16227887 -226436466 + MLT1B LTR MaLR 32 185 -205 1651 198 10 7 chr1 16227887 16228190 -226436163 + AluJo SINE Alu 1 304 -8 1583 149 33 83 chr1 16228190 16228404 -226435949 + MLT1B LTR MaLR 185 375 -15 2269 92 0 0 chr1 16228867 16229182 -226435171 - AluSg SINE Alu 0 317 3 1973 164 0 3 chr1 16229195 16229493 -226434860 - AluJo SINE Alu -15 297 1 2423 87 10 0 chr1 16230017 16230316 -226434037 + AluSx SINE Alu 1 302 -10 2077 117 3 20 chr1 16231679 16231841 -226432512 - AluJb SINE Alu -19 293 137 2241 125 0 0 chr1 16231841 16232137 -226432216 - AluSx SINE Alu -16 296 1 2077 117 3 20 chr1 16232137 16232272 -226432081 - AluJb SINE Alu -175 137 1 216 256 11 67 chr1 16232316 16232406 -226431947 + L2 LINE L2 3167 3251 -62 825 257 237 40 chr1 16232500 16232618 -226431735 + L2 LINE L2 1573 1666 -1648 1703 167 11 14 chr1 16232618 16232900 -226431453 - AluJo SINE Alu -21 291 11 825 257 237 40 chr1 16232900 16232935 -226431418 + L2 LINE L2 1666 1693 -1621 2270 93 0 0 chr1 16232935 16233249 -226431104 + AluY SINE Alu 1 314 0 825 257 237 40 chr1 16233249 16233847 -226430506 + L2 LINE L2 1693 2475 -839 2270 124 0 0 chr1 16233891 16234189 -226430164 - AluSx SINE Alu -14 298 1 2014 110 26 4 chr1 16234209 16234508 -226429845 - AluSc SINE Alu 0 305 1 317 87 0 0 chr1 16234513 16234559 -226429794 - FLAM_A SINE Alu -7 126 81 2602 167 28 2 chr1 16234559 16235020 -226429333 - L1MB2 LINE L1 -119 6052 5580 2340 119 3 0 chr1 16235027 16235337 -226429016 - AluSp SINE Alu 0 313 3 661 125 0 0 chr1 16235437 16235549 -226428804 + AluSp/q SINE Alu 202 313 0 321 314 0 39 chr1 16235839 16235941 -226428412 + L2 LINE L2 3214 3311 -2 193 339 34 0 chr1 16236081 16236140 -226428213 - L2 LINE L2 -220 3052 2992 1823 156 0 4 chr1 16236212 16236487 -226427866 + AluJo SINE Alu 9 282 -30 346 339 36 18 chr1 16236507 16236672 -226427681 - MIR SINE MIR 0 262 95 501 187 98 8 chr1 16236697 16236820 -226427533 - MIR3 SINE MIR -60 148 15 378 251 192 30 chr1 16237381 16237485 -226426868 - MIR SINE MIR -14 248 162 2280 92 34 0 chr1 16237485 16237778 -226426575 + AluSq SINE Alu 3 305 -8 378 251 192 30 chr1 16237778 16237876 -226426477 - MIR SINE MIR -100 162 13 180 320 0 0 chr1 16237906 16237956 -226426397 - MIR SINE MIR -12 250 201 567 296 73 15 chr1 16238031 16238237 -226426116 - MIR SINE MIR -21 241 24 252 130 0 0 chr1 16239954 16240000 -226424353 + (CAGGG)n Simple_repeat Simple_repeat 3 48 0 2101 131 0 0 chr1 16242822 16243104 -226421249 - AluSx SINE Alu -6 306 25 202 277 51 90 chr1 16243507 16243684 -226420669 + L3 LINE CR1 1183 1352 -225 478 279 6 31 chr1 16243830 16243991 -226420362 - MIR SINE MIR -4 258 102 412 321 24 6 chr1 16245954 16246119 -226418234 - MIR3 SINE MIR -3 205 38 253 284 0 0 chr1 16246794 16246861 -226417492 + L2 LINE L2 2703 2769 -545 258 236 118 27 chr1 16246936 16247046 -226417307 + L2 LINE L2 2941 3060 -212 567 218 271 0 chr1 16247725 16247895 -226416458 + MER20 DNA MER1_type 3 218 -1 249 318 47 0 chr1 16247970 16248055 -226416298 - L1MEc LINE L1 -3382 2833 2745 2090 54 70 0 chr1 16248056 16248190 -226416163 + AluY SINE Alu 1 124 -187 1518 60 0 50 chr1 16248190 16248391 -226415962 + AluY SINE Alu 1 191 -120 2090 54 70 0 chr1 16248391 16248515 -226415838 + AluY SINE Alu 124 277 -34 1660 69 10 0 chr1 16248525 16248729 -226415624 + AluY SINE Alu 105 310 -1 580 130 4 5 chr1 16248863 16249125 -226415228 + AluSx SINE Alu 10 309 -3 423 277 194 29 chr1 16249126 16249396 -226414957 - L1MEc LINE L1 -3709 2519 2263 2032 101 50 22 chr1 16249396 16249674 -226414679 + AluSx SINE Alu 1 286 -26 423 277 194 29 chr1 16249674 16249698 -226414655 - L1MEc LINE L1 -3965 2263 2244 252 263 162 22 chr1 16250723 16250858 -226413495 - MIR SINE MIR -69 193 40 736 136 23 15 chr1 16253411 16253543 -226410810 - FLAM_C SINE Alu 0 133 1 248 125 6 194 chr1 16253814 16253885 -226410468 + Charlie5 DNA MER1_type 2456 2482 -142 2571 77 0 0 chr1 16253885 16254195 -226410158 + AluSg SINE Alu 1 310 0 248 125 6 194 chr1 16254195 16254283 -226410070 + Charlie5 DNA MER1_type 2482 2585 -39 1791 184 10 10 chr1 16254284 16254653 -226409700 + AluJo SINE Alu 1 369 0 1871 119 0 4 chr1 16254673 16254934 -226409419 + AluSx SINE Alu 37 296 -16 2220 111 7 3 chr1 16255013 16255310 -226409043 + AluSx SINE Alu 6 303 -9 2365 101 3 0 chr1 16255316 16255614 -226408739 + AluSx SINE Alu 1 299 -13 2306 100 3 10 chr1 16255970 16256280 -226408073 - AluSx SINE Alu -4 308 1 2723 148 58 0 chr1 16256335 16256883 -226407470 - L1MB4 LINE L1 -1 6179 5600 217 0 0 0 chr1 16256886 16256910 -226407443 + (TTTTG)n Simple_repeat Simple_repeat 3 145 0 979 164 0 0 chr1 16256910 16257056 -226407297 - AluJb SINE Alu -1 305 137 481 198 121 0 chr1 16257058 16257174 -226407179 - L1MB4 LINE L1 -575 5605 5476 1898 149 0 49 chr1 16257178 16257506 -226406847 - AluJo SINE Alu 0 312 1 2300 106 7 0 chr1 16257517 16257810 -226406543 - AluSx SINE Alu -17 295 1 374 287 48 104 chr1 16257832 16258083 -226406270 - L2 LINE L2 -5 3267 3031 379 78 62 0 chr1 16258627 16258691 -226405662 + L1M4 LINE L1 4674 4741 -1405 222 37 0 0 chr1 16258691 16258718 -226405635 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 661 116 0 130 chr1 16258718 16258772 -226405581 - L1PB1 LINE L1 -9 6142 6083 2157 118 0 37 chr1 16258772 16259095 -226405258 - AluSx SINE Alu 0 312 2 661 116 0 130 chr1 16259095 16259175 -226405178 - L1PB1 LINE L1 -68 6083 6026 2248 113 3 3 chr1 16259175 16259475 -226404878 - AluSx SINE Alu -12 300 1 994 89 0 0 chr1 16259485 16259609 -226404744 - AluSg SINE Alu -186 124 1 703 191 64 5 chr1 16259609 16259797 -226404556 + L1M4 LINE L1 5134 5332 -814 856 218 6 0 chr1 16259800 16259956 -226404397 + FRAM SINE Alu 1 157 -9 2133 131 0 0 chr1 16259962 16260253 -226404100 + AluSx SINE Alu 1 291 -21 2295 115 7 0 chr1 16260400 16260705 -226403648 - AluSq SINE Alu -6 307 1 291 189 19 0 chr1 16261617 16261670 -226402683 + L2 LINE L2 3217 3270 -2 2464 78 0 0 chr1 16263718 16264014 -226400339 + AluSx SINE Alu 1 296 -16 2184 108 14 0 chr1 16264026 16264313 -226400040 + AluSp SINE Alu 1 291 -22 894 126 0 15 chr1 16264324 16264459 -226399894 + FLAM_C SINE Alu 1 133 0 548 249 81 23 chr1 16264459 16264632 -226399721 + MIR SINE MIR 79 261 -1 692 242 63 42 chr1 16264708 16264720 -226399633 + MIR SINE MIR 30 40 -222 2196 110 4 0 chr1 16264720 16265033 -226399320 + AluSx SINE Alu 2 315 0 692 242 63 42 chr1 16265033 16265235 -226399118 + MIR SINE MIR 40 256 -6 213 235 145 19 chr1 16265718 16265811 -226398542 + MIR SINE MIR 10 107 -102 426 167 0 0 chr1 16265811 16265883 -226398470 - AluSx SINE Alu -8 303 232 1573 81 0 0 chr1 16265883 16266069 -226398284 - AluSx SINE Alu -126 186 1 207 298 0 0 chr1 16266077 16266134 -226398219 + MIR SINE MIR 132 188 -74 262 211 41 14 chr1 16267030 16267177 -226397176 + GA-rich Low_complexity Low_complexity 4 154 0 475 275 14 63 chr1 16267588 16267795 -226396558 + MIR SINE MIR 60 256 -6 2414 105 0 0 chr1 16267828 16268132 -226396221 + AluSp SINE Alu 2 305 -8 412 179 45 167 chr1 16268223 16268379 -226395974 + MIR SINE MIR 12 148 -114 1174 73 0 0 chr1 16268384 16268520 -226395833 + AluSq/x SINE Alu 1 136 -176 1556 82 0 0 chr1 16268520 16268704 -226395649 + AluSc SINE Alu 21 204 -105 1140 144 80 5 chr1 16268932 16268966 -226395387 + AluSg/x SINE Alu 83 113 -195 396 0 0 0 chr1 16268966 16269010 -226395343 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1140 144 80 5 chr1 16269010 16269187 -226395166 + AluSg/x SINE Alu 113 308 0 894 148 0 15 chr1 16269194 16269329 -226395024 + FLAM_C SINE Alu 1 133 0 823 194 0 7 chr1 16269429 16269584 -226394769 + LTR2B LTR ERV1 337 490 0 286 217 48 61 chr1 16269666 16269775 -226394578 - MIR SINE MIR -43 165 50 2214 129 7 0 chr1 16270039 16270342 -226394011 + AluSx SINE Alu 1 305 -7 189 0 0 0 chr1 16270750 16270771 -226393582 + (A)n Simple_repeat Simple_repeat 1 21 0 672 227 74 51 chr1 16270818 16270997 -226393356 + MIR SINE MIR 42 228 -34 840 272 124 22 chr1 16270997 16271401 -226392952 + MLT1J1 LTR MaLR 1 445 -1 672 227 74 51 chr1 16271401 16271437 -226392916 + MIR SINE MIR 228 262 0 205 309 91 56 chr1 16271712 16271925 -226392428 - MIR SINE MIR 0 262 31 2334 95 0 0 chr1 16271928 16272250 -226392103 - AluSx SINE Alu 0 322 1 750 173 22 103 chr1 16272351 16272421 -226391932 - AluJo SINE Alu -139 173 99 1825 152 20 27 chr1 16272421 16272560 -226391793 + AluSx SINE Alu 1 139 -173 2255 100 3 10 chr1 16272560 16272861 -226391492 + AluSp SINE Alu 1 299 -14 1825 152 20 27 chr1 16272861 16273018 -226391335 + AluSx SINE Alu 139 295 -17 750 173 22 103 chr1 16273018 16273132 -226391221 - AluJo SINE Alu -213 99 4 300 322 185 0 chr1 16273185 16273331 -226391022 + L2 LINE L2 3103 3275 -38 1760 78 0 5 chr1 16273348 16273566 -226390787 + AluSg/x SINE Alu 84 300 -12 405 276 26 26 chr1 16273593 16273709 -226390644 - MIR SINE MIR -114 148 33 185 200 0 167 chr1 16273856 16273916 -226390437 - MIR SINE MIR -151 111 62 2207 68 57 0 chr1 16273924 16274204 -226390149 + AluY SINE Alu 1 296 -15 2096 115 35 0 chr1 16274300 16274588 -226389765 + AluSx SINE Alu 1 298 -14 2193 104 7 13 chr1 16274745 16275044 -226389309 + AluSx SINE Alu 7 303 -9 215 258 108 50 chr1 16275536 16275656 -226388697 - MIR SINE MIR -53 209 83 1823 129 79 7 chr1 16275737 16276015 -226388338 - AluSx SINE Alu -3 309 12 465 205 8 66 chr1 16276355 16276477 -226387876 + FLAM_A SINE Alu 1 115 -18 2361 103 0 0 chr1 16276502 16276803 -226387550 - AluSx SINE Alu -11 301 1 2045 121 14 3 chr1 16277714 16278011 -226386342 + AluSx SINE Alu 1 300 -12 2407 92 0 0 chr1 16278151 16278454 -226385899 + AluSg SINE Alu 1 303 -7 27 0 0 0 chr1 16278486 16278513 -226385840 + AT_rich Low_complexity Low_complexity 1 27 0 893 205 35 26 chr1 16278949 16279409 -226384944 + L1ME LINE L1 5129 5698 -466 2174 111 7 3 chr1 16279416 16279757 -226384596 + AluSp SINE Alu 1 313 0 739 172 16 0 chr1 16279760 16279888 -226384465 + AluJo/FLAM SINE Alu 1 130 -182 1134 78 26 0 chr1 16279888 16280041 -226384312 + BC200 scRNA scRNA 2 158 -42 251 261 0 14 chr1 16280216 16280285 -226384068 + MIR SINE MIR 59 126 -82 1823 140 49 0 chr1 16280515 16280800 -226383553 + AluSx SINE Alu 1 299 -13 308 269 0 0 chr1 16281583 16281650 -226382703 + L2 LINE L2 3247 3313 0 518 267 74 61 chr1 16281995 16282306 -226382047 + L1ME4a LINE L1 5573 5887 -234 2301 114 3 0 chr1 16282311 16282608 -226381745 + AluSq SINE Alu 1 298 -15 225 0 0 0 chr1 16282608 16282633 -226381720 + (TA)n Simple_repeat Simple_repeat 1 25 0 1976 160 0 0 chr1 16282633 16282939 -226381414 + AluJb SINE Alu 2 307 0 193 240 0 40 chr1 16283031 16283081 -226381272 + MIR SINE MIR 78 125 -137 813 160 8 0 chr1 16283143 16283268 -226381085 + FLAM_C SINE Alu 1 126 -17 815 130 8 8 chr1 16283754 16283877 -226380476 + FRAM SINE Alu 9 131 -45 2126 109 30 7 chr1 16283979 16284282 -226380071 + AluSq SINE Alu 1 310 -3 252 133 17 33 chr1 16284356 16284416 -226379937 + MER103 DNA DNA 12 70 -96 2063 171 36 16 chr1 16284604 16284989 -226379364 + MER70A LTR ERVL 80 472 0 2116 134 6 22 chr1 16285161 16285335 -226379018 - AluSq SINE Alu -4 309 141 2265 74 36 36 chr1 16285335 16285644 -226378709 - AluSq SINE Alu -4 309 1 2116 134 6 22 chr1 16285644 16285783 -226378570 - AluSq SINE Alu -172 141 1 2412 83 0 3 chr1 16286176 16286477 -226377876 - AluY SINE Alu -7 304 5 1710 144 96 0 chr1 16286481 16286751 -226377602 - AluSx SINE Alu -16 296 1 882 324 96 7 chr1 16286814 16287219 -226377134 - L2 LINE L2 0 3313 2873 1040 269 215 26 chr1 16287264 16287567 -226376786 - L2 LINE L2 -713 2601 2356 2137 112 14 10 chr1 16287567 16287861 -226376492 + AluSx SINE Alu 1 295 -17 1040 269 215 26 chr1 16287861 16288274 -226376079 - L2 LINE L2 -958 2356 1750 1017 144 69 0 chr1 16288287 16288447 -226375906 + AluJb SINE Alu 137 307 -5 370 249 305 30 chr1 16288476 16288975 -226375378 - L2 LINE L2 -1637 1677 1042 207 167 0 0 chr1 16289208 16289250 -226375103 + (CA)n Simple_repeat Simple_repeat 2 43 0 349 283 47 0 chr1 16289662 16289768 -226374585 - MIR SINE MIR -65 143 33 332 301 118 20 chr1 16290185 16290338 -226374015 - MIR SINE MIR -12 250 83 2015 148 3 7 chr1 16290418 16290716 -226373637 - AluJo SINE Alu -15 297 1 1835 153 27 17 chr1 16290789 16291083 -226373270 + AluSx SINE Alu 1 297 -15 1908 131 0 0 chr1 16291083 16291342 -226373011 + AluSx SINE Alu 44 303 -9 234 146 0 21 chr1 16291349 16291397 -226372956 + L1ME LINE L1 5772 5818 -348 1512 146 0 0 chr1 16291597 16291816 -226372537 + AluSg/x SINE Alu 82 300 -12 188 0 74 0 chr1 16291862 16291889 -226372464 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 544 184 0 29 chr1 16291889 16291983 -226372370 - AluJ SINE Alu -22 290 198 928 191 31 10 chr1 16292093 16292287 -226372066 - AluJ SINE Alu -114 198 1 433 116 14 0 chr1 16292436 16292505 -226371848 - MSTD LTR MaLR 0 396 327 2335 86 27 0 chr1 16292646 16292947 -226371406 + AluY SINE Alu 1 309 -2 2079 98 3 60 chr1 16292957 16293108 -226371245 + AluSx SINE Alu 1 126 -186 2256 125 0 3 chr1 16293108 16293467 -226370886 + AluSx SINE Alu 1 312 0 2079 98 3 60 chr1 16293467 16293633 -226370720 + AluSx SINE Alu 126 300 -12 572 144 52 0 chr1 16293640 16293737 -226370616 - MER7A DNA MER2_type -246 100 1 290 279 0 0 chr1 16293969 16294037 -226370316 + MIR SINE MIR 106 173 -89 246 283 28 47 chr1 16294103 16294209 -226370144 + L2 LINE L2 3132 3235 -78 2179 118 0 10 chr1 16294228 16294532 -226369821 + AluSx SINE Alu 1 301 -11 2550 64 0 0 chr1 16294536 16294834 -226369519 + AluY SINE Alu 1 298 -13 450 0 0 0 chr1 16295006 16295056 -226369297 + (TC)n Simple_repeat Simple_repeat 1 50 0 1530 50 0 0 chr1 16295550 16295560 -226368793 + (C)n Simple_repeat Simple_repeat 1 190 0 1530 50 0 0 chr1 16295560 16295740 -226368613 + (C)n Simple_repeat Simple_repeat 1 180 0 2147 118 4 0 chr1 16296293 16296602 -226367751 + AluSg SINE Alu 1 310 0 24 32 0 0 chr1 16296632 16296663 -226367690 + AT_rich Low_complexity Low_complexity 1 31 0 2126 141 0 0 chr1 16296837 16297141 -226367212 + AluSx SINE Alu 3 306 -6 594 186 20 0 chr1 16297182 16297284 -226367069 - FRAM SINE Alu -33 143 40 613 179 0 0 chr1 16297289 16297395 -226366958 - FLAM_A SINE Alu -19 123 18 641 188 339 80 chr1 16297451 16297690 -226366663 - AluJo SINE Alu 0 302 2 21 36 0 0 chr1 16297690 16297718 -226366635 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr1 16298774 16298814 -226365539 + (GA)n Simple_repeat Simple_repeat 1 40 0 1590 141 0 24 chr1 16298986 16299151 -226365202 - AluSx SINE Alu -12 300 141 363 44 0 0 chr1 16299151 16299196 -226365157 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1590 141 0 24 chr1 16299196 16299278 -226365075 - AluSx SINE Alu -171 141 59 435 220 80 13 chr1 16299764 16299914 -226364439 - REP3 LTR ERV -401 161 2 301 188 78 0 chr1 16299915 16299979 -226364374 + MER45B DNA AcHobo 312 380 -660 1544 0 0 0 chr1 16300432 16300596 -226363757 - U1 snRNA snRNA -1 164 1 261 299 51 26 chr1 16300980 16301097 -226363256 - Charlie4 DNA MER1_type -4 1957 1838 3047 122 37 4 chr1 16301696 16302178 -226362175 + MER41E LTR ERV1 15 512 0 314 357 83 0 chr1 16302293 16302450 -226361903 + HAL1 LINE L1 527 696 -1811 2690 142 49 46 chr1 16302466 16303036 -226361317 - LTR8A LTR ERV1 0 727 156 946 160 16 27 chr1 16303048 16303236 -226361117 - MER1B DNA MER1_type -2 337 152 2499 314 48 51 chr1 16304114 16305030 -226359323 - PRIMA41-int LTR ERV1 -2056 5700 4819 2071 113 52 0 chr1 16305030 16305321 -226359032 - AluSx SINE Alu -6 306 1 2499 314 48 51 chr1 16305321 16306067 -226358286 - PRIMA41-int LTR ERV1 -2937 4819 4072 1748 91 0 0 chr1 16306067 16306288 -226358065 - AluY SINE Alu -90 221 1 532 258 195 21 chr1 16306356 16306482 -226357871 + L1MEc LINE L1 1704 1807 -4589 1825 163 6 31 chr1 16306482 16306802 -226357551 + AluSx SINE Alu 1 312 0 532 258 195 21 chr1 16306802 16306962 -226357391 + L1MEc LINE L1 1807 2040 -4356 445 177 105 57 chr1 16307178 16307302 -226357051 - FLAM_C SINE Alu -12 131 2 562 68 0 0 chr1 16307327 16307401 -226356952 - tRNA-Asn-AAC tRNA tRNA -3 74 1 1860 123 58 14 chr1 16308090 16308366 -226355987 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr1 16308366 16308387 -226355966 + AT_rich Low_complexity Low_complexity 1 21 0 343 206 0 0 chr1 16308435 16308503 -226355850 + tRNA-His-CAC tRNA tRNA 6 73 -2 610 204 73 0 chr1 16308997 16309134 -226355219 - U1 snRNA snRNA -14 151 5 579 40 0 0 chr1 16310261 16310335 -226354018 - tRNA-Glu-GAG tRNA tRNA -1 74 1 327 323 24 18 chr1 16310828 16310992 -226353361 + L2 LINE L2 2351 2515 -799 326 200 51 120 chr1 16311073 16311248 -226353105 - MER20 DNA MER1_type -56 163 1 1155 170 33 21 chr1 16312129 16312370 -226351983 - MLT1A1 LTR MaLR 0 365 122 2370 108 8 0 chr1 16312547 16312899 -226351454 - THE1A LTR MaLR 0 355 1 547 284 149 40 chr1 16312984 16313481 -226350872 + L1M4 LINE L1 4697 5247 -899 1961 64 54 50 chr1 16314942 16315250 -226349103 + AluY SINE Alu 1 309 0 416 288 146 25 chr1 16315578 16315751 -226348602 + L1ME3 LINE L1 4987 5198 -948 4601 182 19 11 chr1 16315751 16316663 -226347690 + MER49 LTR ERV1 5 923 0 416 288 146 25 chr1 16316663 16316729 -226347624 + L1ME3 LINE L1 5198 5255 -891 8352 46 3 0 chr1 16316730 16318579 -226345774 + L1PA4 LINE L1 4293 6151 -4 436 259 44 29 chr1 16318602 16318807 -226345546 + L1ME3 LINE L1 5264 5471 -703 552 156 0 0 chr1 16318807 16318897 -226345456 - AluJb SINE Alu -14 298 209 * 662 130 0 0 chr1 16318892 16318992 -226345361 - AluSg/x SINE Alu -131 179 80 307 311 155 0 chr1 16318995 16319143 -226345210 + L1ME3 LINE L1 5461 5631 -531 327 248 58 51 chr1 16319229 16319366 -226344987 + L1ME3 LINE L1 5831 5968 -196 614 220 30 129 chr1 16320217 16320249 -226344104 - MIR SINE MIR -18 244 210 1732 179 7 13 chr1 16320249 16320550 -226343803 + AluJo SINE Alu 1 299 -13 614 220 30 129 chr1 16320550 16320781 -226343572 - MIR SINE MIR -52 210 7 289 200 165 0 chr1 16321704 16321789 -226342564 + L1ME3 LINE L1 6034 6132 -30 559 177 0 0 chr1 16321817 16321913 -226342440 + AluSg/x SINE Alu 195 290 -22 334 232 0 0 chr1 16322366 16322435 -226341918 - tRNA-His-CAC tRNA tRNA -3 72 4 2214 110 10 0 chr1 16322687 16322979 -226341374 - AluSx SINE Alu -17 295 1 502 81 0 0 chr1 16323609 16323683 -226340670 - tRNA-Gly-GGG tRNA tRNA 0 74 1 430 206 0 0 chr1 16325329 16325402 -226338951 - tRNA-Val-GTG tRNA tRNA -3 73 1 1527 147 4 0 chr1 16326235 16326473 -226337880 + AluSg/x SINE Alu 68 306 -4 2169 88 29 0 chr1 16326785 16327109 -226337244 - AluSx SINE Alu 0 332 1 409 205 82 16 chr1 16327111 16327233 -226337120 - MIR SINE MIR -117 145 16 275 253 0 24 chr1 16327741 16327824 -226336529 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 329 227 94 0 chr1 16328995 16329057 -226335296 + MIR SINE MIR 104 159 -103 2288 108 0 0 chr1 16329057 16329353 -226335000 - AluSx SINE Alu -16 296 1 329 227 94 0 chr1 16329353 16329403 -226334950 + MIR SINE MIR 159 231 -31 843 259 81 0 chr1 16329490 16329726 -226334627 + MIR SINE MIR 8 262 0 204 250 0 0 chr1 16329747 16329795 -226334558 + (TTA)n Simple_repeat Simple_repeat 3 50 0 276 294 64 18 chr1 16329796 16329905 -226334448 + MIR SINE MIR 58 171 -91 2475 76 0 3 chr1 16330745 16331048 -226333305 - AluY SINE Alu -7 304 3 2251 95 7 0 chr1 16331051 16331346 -226333007 - AluSx SINE Alu -15 297 1 225 239 9 28 chr1 16331444 16331553 -226332800 + T-rich Low_complexity Low_complexity 1 107 0 282 240 13 0 chr1 16332438 16332513 -226331840 - MIR SINE MIR -87 121 46 419 258 105 21 chr1 16332635 16332825 -226331528 + MIR SINE MIR 50 255 -7 309 234 0 39 chr1 16333144 16333221 -226331132 + MIR SINE MIR 78 151 -57 2299 114 7 0 chr1 16333289 16333596 -226330757 - AluSx SINE Alu -3 309 1 2186 132 0 3 chr1 16334100 16334410 -226329943 + AluSx SINE Alu 1 309 -3 703 144 22 65 chr1 16334419 16334558 -226329795 + FLAM_A SINE Alu 1 133 0 897 305 39 44 chr1 16334560 16334944 -226329409 + L1MC4a LINE L1 5429 5813 -1995 2371 49 0 14 chr1 16334944 16335253 -226329100 + AluY SINE Alu 1 305 0 897 305 39 44 chr1 16335253 16335326 -226329027 + L1MC4a LINE L1 5813 5885 -1923 192 135 0 0 chr1 16335375 16335412 -226328941 + (TG)n Simple_repeat Simple_repeat 1 37 0 2384 107 0 0 chr1 16335468 16335777 -226328576 + AluSx SINE Alu 1 309 -3 228 163 0 0 chr1 16335811 16335854 -226328499 + A-rich Low_complexity Low_complexity 1 43 0 856 187 7 26 chr1 16336060 16336215 -226328138 + AluJo SINE Alu 1 152 -160 248 362 0 0 chr1 16336364 16336458 -226327895 + MIR SINE MIR 165 258 -4 1853 160 45 0 chr1 16336675 16336963 -226327390 + AluJb SINE Alu 2 302 -10 816 152 0 0 chr1 16336970 16337095 -226327258 + FLAM_C SINE Alu 1 125 -8 374 192 293 0 chr1 16337118 16337217 -226327136 + MER3 DNA MER1_type 2 129 -80 2464 75 0 13 chr1 16337217 16337523 -226326830 - AluY SINE Alu -8 303 2 1580 121 0 14 chr1 16337524 16337747 -226326606 - AluSg/x SINE Alu -8 302 83 29 0 0 0 chr1 16337780 16337809 -226326544 + AT_rich Low_complexity Low_complexity 1 29 0 866 156 0 7 chr1 16337810 16337945 -226326408 + AluJo SINE Alu 1 134 -178 494 210 0 0 chr1 16338117 16338217 -226326136 + FRAM SINE Alu 38 137 -39 303 28 0 0 chr1 16338225 16338261 -226326092 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 1303 90 21 26 chr1 16338265 16338283 -226326070 + AluY SINE Alu 115 132 -179 2169 105 3 10 chr1 16338283 16338579 -226325774 + AluSg1 SINE Alu 1 294 -15 1303 90 21 26 chr1 16338579 16338749 -226325604 + AluY SINE Alu 132 302 -9 1786 98 0 29 chr1 16339932 16340178 -226324175 - AluSx SINE Alu -15 297 59 475 217 84 14 chr1 16340677 16340820 -226323533 - REP3 LTR ERV -408 154 2 292 203 78 0 chr1 16340821 16340885 -226323468 + MER45B DNA AcHobo 312 380 -660 1462 0 0 0 chr1 16341346 16341510 -226322843 - U1 snRNA snRNA -1 164 1 289 319 51 14 chr1 16341894 16342032 -226322321 - Charlie4 DNA MER1_type -4 1957 1815 3158 123 29 4 chr1 16342593 16343079 -226321274 + MER41E LTR ERV1 15 512 0 2740 145 49 47 chr1 16343363 16343937 -226320416 - LTR8A LTR ERV1 0 727 153 1913 150 9 18 chr1 16343945 16344285 -226320068 - MER1B DNA MER1_type -2 337 1 555 177 41 54 chr1 16344288 16344435 -226319918 - LTR8 LTR ERV1 -545 146 2 594 178 17 17 chr1 16344572 16344690 -226319663 + LTR49 LTR ERV1 35 152 -443 2512 193 14 24 chr1 16344705 16344862 -226319491 + MER72 LTR ERV1 1 158 -564 3790 98 47 23 chr1 16344862 16345022 -226319331 + MER51D LTR ERV1 1 156 -501 2553 77 0 3 chr1 16345022 16345334 -226319019 + AluSx SINE Alu 1 311 -1 3790 98 47 23 chr1 16345334 16345813 -226318540 + MER51D LTR ERV1 156 655 -2 2512 193 14 24 chr1 16345813 16346164 -226318189 + MER72 LTR ERV1 158 504 -218 325 299 23 89 chr1 16346167 16346381 -226317972 + L1ME LINE L1 5541 5740 -381 1236 122 0 6 chr1 16346396 16346560 -226317793 - AluSg/x SINE Alu -16 296 134 644 13 0 0 chr1 16347025 16347100 -226317253 - tRNA-Asn-AAC tRNA tRNA -2 75 1 336 286 83 30 chr1 16348183 16348351 -226316002 - L1ME LINE L1 -320 5801 5625 507 204 30 0 chr1 16348372 16348504 -226315849 - L1MEc LINE L1 -4258 2138 2003 534 277 108 10 chr1 16348552 16348866 -226315487 - L1MEc LINE L1 -4491 1905 1561 28 61 0 0 chr1 16348975 16349024 -226315329 + AT_rich Low_complexity Low_complexity 1 49 0 390 250 19 9 chr1 16350067 16350175 -226314178 - L2 LINE L2 -797 2517 2409 3057 146 29 22 chr1 16350215 16350806 -226313547 + LTR49 LTR ERV1 1 595 0 5606 141 73 61 chr1 16350808 16352003 -226312350 + LTR49-int LTR ERV1 1 1209 -5122 294 306 14 0 chr1 16352003 16352075 -226312278 + tRNA-Glu-GAG tRNA tRNA 3 75 0 438 60 30 130 chr1 16352080 16352156 -226312197 + LTR49-int LTR ERV1 1288 1353 -4978 2024 165 0 0 chr1 16352156 16352459 -226311894 - AluSx SINE Alu -7 305 3 438 60 30 130 chr1 16352459 16352482 -226311871 + LTR49-int LTR ERV1 1353 1377 -4954 2131 126 46 118 chr1 16352484 16352778 -226311575 - L1M4c LINE L1 -4820 1564 1323 2088 121 4 0 chr1 16352778 16353058 -226311295 + AluSp SINE Alu 1 281 -32 2131 126 46 118 chr1 16353058 16353286 -226311067 - L1M4c LINE L1 -5061 1323 1080 1498 106 0 0 chr1 16353971 16354205 -226310148 + AluSg/x SINE Alu 95 328 0 187 398 43 5 chr1 16354262 16354448 -226309905 + L3 LINE CR1 66 258 -1319 342 0 0 0 chr1 16354697 16354735 -226309618 + (T)n Simple_repeat Simple_repeat 1 38 0 357 340 27 27 chr1 16355208 16355358 -226308995 - MER5B DNA MER1_type -22 156 7 2278 94 0 32 chr1 16355619 16355928 -226308425 - AluY SINE Alu -12 299 1 1949 109 48 48 chr1 16356073 16356386 -226307967 + AluSp SINE Alu 1 313 0 184 396 104 7 chr1 16356586 16356730 -226307623 + MIR3 SINE MIR 44 201 -7 1761 312 68 27 chr1 16358040 16358953 -226305400 - PRIMA41-int LTR ERV1 -2057 5699 4750 1923 127 11 7 chr1 16358954 16359238 -226305115 - AluSx SINE Alu -6 306 22 2185 93 0 0 chr1 16359339 16359609 -226304744 - AluSx SINE Alu -42 270 1 2428 84 3 0 chr1 16361445 16361743 -226302610 - AluSp SINE Alu -14 299 1 1687 180 21 0 chr1 16362111 16362394 -226301959 + AluJb SINE Alu 1 289 -23 802 209 52 94 chr1 16362701 16363008 -226301345 + MER58B DNA MER1_type 48 341 0 332 321 15 15 chr1 16363956 16364090 -226300263 + MIR SINE MIR 79 212 -50 2185 100 0 14 chr1 16364298 16364589 -226299764 - AluSg1 SINE Alu -22 287 1 996 199 27 36 chr1 16364746 16364967 -226299386 - MER20 DNA MER1_type 0 219 1 2106 146 7 0 chr1 16365089 16365391 -226298962 + AluSx SINE Alu 3 306 -6 2339 99 3 3 chr1 16365391 16365693 -226298660 + AluSp SINE Alu 1 302 -11 1731 159 32 14 chr1 16365750 16366027 -226298326 + AluJo SINE Alu 1 282 -30 1205 161 54 93 chr1 16366027 16366243 -226298110 - AluJo SINE Alu -15 297 93 2485 86 0 0 chr1 16366243 16366544 -226297809 + AluSx SINE Alu 1 301 -11 1205 161 54 93 chr1 16366544 16366607 -226297746 - AluJo SINE Alu -219 93 29 198 240 53 40 chr1 16368360 16368435 -226295918 - MIR SINE MIR -113 95 20 374 250 198 96 chr1 16368752 16369076 -226295277 - L2 LINE L2 -2 3270 2914 228 67 0 0 chr1 16369326 16369356 -226294997 + (GGCTG)n Simple_repeat Simple_repeat 1 30 0 266 77 58 0 chr1 16369713 16369765 -226294588 + T-rich Low_complexity Low_complexity 2 56 0 292 234 0 99 chr1 16369811 16369922 -226294431 - MIR SINE MIR -73 135 36 2329 227 64 27 chr1 16370036 16370131 -226294222 - L1ME3A LINE L1 0 6170 6080 2182 87 3 17 chr1 16370131 16370441 -226293912 + AluSp SINE Alu 1 306 0 2329 227 64 27 chr1 16370441 16371080 -226293273 - L1ME3A LINE L1 -90 6080 5408 302 296 177 0 chr1 16371884 16372070 -226292283 - L2 LINE L2 -219 3053 2835 33 0 0 0 chr1 16372224 16372257 -226292096 + GC_rich Low_complexity Low_complexity 1 33 0 2322 107 3 10 chr1 16372565 16372874 -226291479 - AluSp SINE Alu -6 307 1 2270 110 0 0 chr1 16372961 16373252 -226291101 - AluSg SINE Alu -19 291 1 261 250 169 27 chr1 16373287 16373435 -226290918 - L2 LINE L2 -22 3291 3123 652 269 29 49 chr1 16373450 16373510 -226290843 + MIR SINE MIR 23 83 -179 2328 105 3 6 chr1 16373510 16373824 -226290529 - AluSp SINE Alu 0 313 1 2247 109 3 3 chr1 16373827 16374121 -226290232 - AluSx SINE Alu -18 294 1 652 269 29 49 chr1 16374121 16374301 -226290052 + MIR SINE MIR 85 262 0 380 279 162 13 chr1 16374303 16374457 -226289896 - MIR SINE MIR -7 255 79 2395 100 0 3 chr1 16375480 16375790 -226288563 - AluSq SINE Alu -4 309 1 926 209 0 22 chr1 16376178 16376194 -226288159 - MER58A DNA MER1_type -2196 224 209 1223 187 117 11 chr1 16376194 16376467 -226287886 - AluSg1 SINE Alu -7 302 1 926 209 0 22 chr1 16376467 16376632 -226287721 - MER58A DNA MER1_type -2211 209 47 2145 118 20 3 chr1 16376639 16376944 -226287409 + AluSq SINE Alu 1 310 -3 2976 95 62 28 chr1 16376969 16377168 -226287185 + MER75 DNA T2_type 1 192 -322 1963 153 10 7 chr1 16377168 16377476 -226286877 - AluJb SINE Alu -3 309 1 2976 95 62 28 chr1 16377476 16377773 -226286580 + MER75 DNA T2_type 192 514 0 1949 128 54 10 chr1 16377785 16378081 -226286272 + AluJb SINE Alu 1 309 -3 1608 165 12 77 chr1 16379961 16380072 -226284281 + AluJo SINE Alu 1 118 -194 2074 125 14 7 chr1 16380072 16380369 -226283984 - AluSx SINE Alu -13 299 1 1608 165 12 77 chr1 16380369 16380584 -226283769 + AluJo SINE Alu 118 306 -6 2109 126 27 0 chr1 16380874 16381167 -226283186 + AluSx SINE Alu 1 301 -11 1993 217 124 8 chr1 16381688 16382219 -226282134 + MLT1E LTR MaLR 1 593 0 271 236 55 73 chr1 16382344 16382454 -226281899 - MIR SINE MIR 0 262 155 2104 124 10 3 chr1 16382454 16382752 -226281601 - AluSx SINE Alu -12 300 1 936 156 167 0 chr1 16382762 16382948 -226281405 - MLT1A1 LTR MaLR 0 365 149 950 133 0 0 chr1 16382948 16383083 -226281270 - FLAM_C SINE Alu 0 143 9 1968 130 42 0 chr1 16383100 16383384 -226280969 - AluSq SINE Alu -17 296 1 630 192 34 48 chr1 16383384 16383530 -226280823 - MLT1A1 LTR MaLR -211 154 11 655 219 55 0 chr1 16383539 16383667 -226280686 - MIR SINE MIR -113 149 15 321 26 0 0 chr1 16383983 16384021 -226280332 + (T)n Simple_repeat Simple_repeat 1 38 0 2420 109 0 0 chr1 16384052 16384364 -226279989 - AluSq SINE Alu -1 312 1 763 235 131 68 chr1 16384364 16384802 -226279551 - MLT1E LTR MaLR -51 542 4 2025 108 29 4 chr1 16384803 16385082 -226279271 + AluSc SINE Alu 1 286 -23 1316 227 142 15 chr1 16385091 16385501 -226278852 - MLT1C LTR MaLR 0 467 6 342 307 45 69 chr1 16385518 16385720 -226278633 + L1MC4a LINE L1 5742 5938 -1870 1164 139 0 0 chr1 16385725 16385891 -226278462 + AluSg/x SINE Alu 135 300 -10 2013 147 3 0 chr1 16385891 16386176 -226278177 + AluSq SINE Alu 1 286 -27 367 79 51 64 chr1 16386295 16386379 -226277974 - FLAM_A SINE Alu 0 133 62 1364 173 0 9 chr1 16386434 16386648 -226277705 + AluJo SINE Alu 1 212 -100 355 317 49 62 chr1 16386750 16386993 -226277360 - L1ME LINE L1 -341 5780 5541 381 252 75 63 chr1 16387727 16387981 -226276372 - L1ME3 LINE L1 -326 5836 5580 2553 199 68 24 chr1 16388358 16388991 -226275362 - MER67B LTR ERV1 0 661 1 1140 223 36 13 chr1 16389500 16389831 -226274522 + MLT2B1 LTR ERVL 1 417 -103 372 94 0 0 chr1 16389831 16389884 -226274469 + (TG)n Simple_repeat Simple_repeat 2 54 0 3055 187 28 75 chr1 16390164 16390306 -226274047 - L1MD1 LINE L1 0 6242 6095 2328 95 0 0 chr1 16390306 16390618 -226273735 + AluY SINE Alu 1 312 0 3055 187 28 75 chr1 16390618 16391362 -226272991 - L1MD1 LINE L1 -147 6095 5397 266 100 0 80 chr1 16391364 16391414 -226272939 - MLT1B LTR MaLR -344 46 1 5966 225 62 25 chr1 16391414 16393542 -226270811 - L1MDa LINE L1 -3460 3080 871 21 0 0 0 chr1 16393817 16393838 -226270515 + GC_rich Low_complexity Low_complexity 1 21 0 251 253 38 13 chr1 16394046 16394125 -226270228 + MIR SINE MIR 41 121 -87 2016 125 35 0 chr1 16394156 16394466 -226269887 + AluSx SINE Alu 1 312 0 2176 91 29 0 chr1 16394759 16395087 -226269266 - AluSx SINE Alu 0 336 1 411 219 73 16 chr1 16395089 16395212 -226269141 - MIR SINE MIR -117 145 16 270 242 0 0 chr1 16395728 16395790 -226268563 + (CAGAGA)n Simple_repeat Simple_repeat 4 65 0 311 197 93 17 chr1 16396693 16396758 -226267595 + MIR SINE MIR 104 163 -99 2432 87 0 0 chr1 16396758 16397056 -226267297 - AluSx SINE Alu -14 298 1 311 197 93 17 chr1 16397056 16397106 -226267247 + MIR SINE MIR 163 231 -31 804 238 104 0 chr1 16397193 16397424 -226266929 + MIR SINE MIR 8 262 0 249 295 0 13 chr1 16397492 16397570 -226266783 + MIR SINE MIR 54 130 -78 2227 78 53 0 chr1 16398430 16398713 -226265640 - AluY SINE Alu -12 299 2 2018 128 0 4 chr1 16398715 16398988 -226265365 - AluSx SINE Alu -8 304 33 2157 105 36 13 chr1 16399048 16399354 -226264999 - AluSp SINE Alu 0 313 1 979 127 0 8 chr1 16399354 16399488 -226264865 - AluSq/x SINE Alu -178 135 3 29 0 0 0 chr1 16399534 16399563 -226264790 + AT_rich Low_complexity Low_complexity 1 29 0 721 165 0 8 chr1 16399564 16399685 -226264668 + FLAM_C SINE Alu 1 120 -23 239 362 0 0 chr1 16399879 16399973 -226264380 + MIR SINE MIR 165 258 -4 1765 97 108 8 chr1 16400198 16400457 -226263896 + AluSq SINE Alu 10 294 -19 2069 153 3 0 chr1 16400491 16400791 -226263562 + AluJb SINE Alu 2 302 -10 832 165 0 0 chr1 16400798 16400931 -226263422 + FLAM_C SINE Alu 1 133 0 381 192 293 0 chr1 16400962 16401061 -226263292 + MER3 DNA MER1_type 2 129 -80 2471 78 0 13 chr1 16401069 16401376 -226262977 - AluY SINE Alu 0 311 9 1431 142 0 21 chr1 16401376 16401600 -226262753 - AluSg/x SINE Alu -7 303 83 23 0 0 0 chr1 16401640 16401663 -226262690 + AT_rich Low_complexity Low_complexity 1 23 0 827 179 0 8 chr1 16401665 16401799 -226262554 + AluJo SINE Alu 2 134 -178 423 260 0 0 chr1 16401977 16402077 -226262276 + FRAM SINE Alu 38 137 -29 282 56 0 0 chr1 16402085 16402121 -226262232 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 1209 77 24 29 chr1 16402125 16402143 -226262210 + AluY SINE Alu 115 132 -176 2179 116 3 3 chr1 16402143 16402444 -226261909 + AluSg1 SINE Alu 1 301 -8 1209 77 24 29 chr1 16402444 16402620 -226261733 + AluY SINE Alu 132 308 0 253 267 23 0 chr1 16404531 16404617 -226259736 - MIR SINE MIR -75 133 46 435 229 133 9 chr1 16404705 16404929 -226259424 + MIR SINE MIR 3 255 -7 309 288 0 0 chr1 16405248 16405321 -226259032 + MIR SINE MIR 77 149 -113 1959 145 7 0 chr1 16405393 16405683 -226258670 - AluSx SINE Alu -7 305 14 2164 117 10 3 chr1 16406196 16406496 -226257857 + AluJb SINE Alu 1 302 -10 1020 213 126 92 chr1 16406526 16406945 -226257408 + L1MC5 LINE L1 7054 7457 -504 1965 141 30 3 chr1 16406945 16407243 -226257110 + AluSx SINE Alu 1 306 -6 1020 213 126 92 chr1 16407243 16407327 -226257026 + L1MC5 LINE L1 7457 7537 -424 2109 115 0 4 chr1 16407327 16407606 -226256747 - AluSx SINE Alu -20 292 15 1020 213 126 92 chr1 16407606 16407687 -226256666 + L1MC5 LINE L1 7537 7659 -302 1301 174 9 0 chr1 16407719 16407932 -226256421 + AluJb SINE Alu 21 235 -77 208 315 102 0 chr1 16408161 16408288 -226256065 + L2 LINE L2 2920 3059 -213 1747 116 31 12 chr1 16408498 16408788 -226255565 + AluSx SINE Alu 21 315 0 656 272 67 20 chr1 16408795 16408990 -226255363 + MIR SINE MIR 53 256 -6 195 235 145 19 chr1 16409473 16409566 -226254787 + MIR SINE MIR 10 107 -102 402 167 0 0 chr1 16409566 16409638 -226254715 - AluSx SINE Alu -8 304 233 1597 75 0 0 chr1 16409638 16409824 -226254529 - AluSx SINE Alu -126 186 1 202 298 0 0 chr1 16409832 16409889 -226254464 + MIR SINE MIR 132 188 -74 262 211 41 14 chr1 16410784 16410931 -226253422 + GA-rich Low_complexity Low_complexity 4 154 0 446 275 14 63 chr1 16411342 16411549 -226252804 + MIR SINE MIR 60 256 -6 2404 106 0 0 chr1 16411582 16411884 -226252469 + AluSp SINE Alu 2 303 -10 368 179 45 167 chr1 16411975 16412131 -226252222 + MIR SINE MIR 12 148 -114 1177 73 0 0 chr1 16412136 16412272 -226252081 + AluSq/x SINE Alu 1 136 -177 1558 82 0 0 chr1 16412272 16412456 -226251897 + AluSc SINE Alu 21 204 -105 1148 144 80 5 chr1 16412684 16412718 -226251635 + AluSg/x SINE Alu 83 113 -195 432 0 0 0 chr1 16412718 16412766 -226251587 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1148 144 80 5 chr1 16412766 16412943 -226251410 + AluSg/x SINE Alu 113 308 0 838 148 0 15 chr1 16412950 16413085 -226251268 + FLAM_C SINE Alu 1 133 0 855 187 0 7 chr1 16413185 16413340 -226251013 + LTR2B LTR ERV1 337 490 0 264 205 42 66 chr1 16413422 16413522 -226250831 - MIR SINE MIR -43 165 63 2220 129 7 0 chr1 16413795 16414098 -226250255 + AluSx SINE Alu 1 305 -7 627 227 74 51 chr1 16414572 16414751 -226249602 + MIR SINE MIR 42 228 -34 730 285 119 17 chr1 16414751 16415155 -226249198 + MLT1J1 LTR MaLR 1 445 -1 627 227 74 51 chr1 16415155 16415191 -226249162 + MIR SINE MIR 228 262 0 194 343 127 38 chr1 16415466 16415679 -226248674 - MIR SINE MIR 0 262 31 2347 95 0 0 chr1 16415682 16416004 -226248349 - AluSx SINE Alu 0 322 1 1939 152 0 30 chr1 16416027 16416330 -226248023 + AluJb SINE Alu 1 294 -18 629 252 187 8 chr1 16416417 16416627 -226247726 + L2 LINE L2 2605 2776 -496 2322 110 0 25 chr1 16416627 16416945 -226247408 - AluSx SINE Alu -2 310 1 629 252 187 8 chr1 16416945 16417141 -226247212 + L2 LINE L2 2776 3080 -192 1569 129 32 79 chr1 16417187 16417467 -226246886 - AluJo SINE Alu -16 296 30 206 306 83 0 chr1 16418156 16418228 -226246125 + MIR SINE MIR 111 188 -74 242 132 19 0 chr1 16418798 16418851 -226245502 + G-rich Low_complexity Low_complexity 5 58 0 2186 94 34 14 chr1 16419384 16419546 -226244807 - AluSg SINE Alu -7 303 131 2225 56 77 3 chr1 16419546 16419831 -226244522 - AluY SINE Alu -5 306 1 2186 94 34 14 chr1 16419831 16419965 -226244388 - AluSg SINE Alu -179 131 1 401 257 18 0 chr1 16420753 16420862 -226243491 - MIR SINE MIR -80 182 72 505 249 102 0 chr1 16421469 16421666 -226242687 + L1ME4a LINE L1 5717 5933 -188 2220 121 0 0 chr1 16421680 16421969 -226242384 - AluSq SINE Alu -14 299 11 1496 82 16 78 chr1 16422038 16422140 -226242213 - MER84 LTR ERVI -259 248 141 2304 104 3 0 chr1 16422140 16422437 -226241916 + AluSg1 SINE Alu 1 298 -11 1496 82 16 78 chr1 16422437 16422591 -226241762 - MER84 LTR ERVI -366 141 8 2030 131 0 7 chr1 16422618 16422916 -226241437 - AluSx SINE Alu -16 296 1 294 102 41 7 chr1 16422928 16422986 -226241367 - Alu SINE Alu -9 293 245 743 244 165 28 chr1 16423011 16423515 -226240838 - L1MEc LINE L1 -4258 2138 1566 584 197 0 0 chr1 16423613 16423730 -226240623 + FLAM_C SINE Alu 1 117 -16 195 42 0 0 chr1 16423738 16423762 -226240591 + (CA)n Simple_repeat Simple_repeat 1 24 0 2235 88 0 14 chr1 16424014 16424331 -226240022 + AluY SINE Alu 1 313 0 1692 137 0 0 chr1 16424358 16424591 -226239762 - AluSx SINE Alu -79 233 1 917 173 31 119 chr1 16425255 16425481 -226238872 + AluJb SINE Alu 1 206 -106 216 0 0 0 chr1 16425857 16425881 -226238472 + (A)n Simple_repeat Simple_repeat 1 24 0 253 91 0 0 chr1 16425909 16425942 -226238411 - U1 snRNA snRNA 0 165 133 1530 208 125 60 chr1 16425942 16426477 -226237876 - LTR4 LTR ERV1 0 596 27 753 196 14 0 chr1 16427066 16427236 -226237117 - AluJb SINE Alu 0 311 140 1975 110 86 10 chr1 16427368 16427658 -226236695 - AluSx SINE Alu 0 312 1 390 185 123 0 chr1 16428458 16428539 -226235814 - AluSg/x SINE Alu -1 301 211 * 2208 247 9 23 chr1 16428532 16429058 -226235295 - MER87 LTR ERV1 -22 519 1 2010 98 52 36 chr1 16429088 16429393 -226234960 - AluSg SINE Alu 0 310 1 2136 121 4 0 chr1 16429462 16429773 -226234580 + AluSg SINE Alu 1 312 0 24 32 0 0 chr1 16429801 16429832 -226234521 + AT_rich Low_complexity Low_complexity 1 31 0 2156 135 0 0 chr1 16430006 16430310 -226234043 + AluSx SINE Alu 3 306 -6 21 36 0 0 chr1 16430320 16430348 -226234005 + AT_rich Low_complexity Low_complexity 1 28 0 572 176 20 0 chr1 16430351 16430453 -226233900 - FRAM SINE Alu -33 143 40 560 179 0 0 chr1 16430458 16430564 -226233789 - FLAM_A SINE Alu -19 123 18 625 221 263 8 chr1 16430620 16430860 -226233493 - AluJo SINE Alu 0 302 2 26 50 0 0 chr1 16430860 16430900 -226233453 + AT_rich Low_complexity Low_complexity 1 40 0 324 48 0 0 chr1 16431944 16431986 -226232367 + (GA)n Simple_repeat Simple_repeat 1 42 0 1614 138 0 24 chr1 16432158 16432322 -226232031 - AluSx SINE Alu -13 299 141 249 33 0 0 chr1 16432322 16432352 -226232001 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1614 138 0 24 chr1 16432352 16432434 -226231919 - AluSx SINE Alu -171 141 59 469 220 80 13 chr1 16432920 16433070 -226231283 - REP3 LTR ERV -401 161 2 313 188 78 0 chr1 16433071 16433135 -226231218 + MER45B DNA AcHobo 312 380 -660 1462 0 0 0 chr1 16433587 16433751 -226230602 - U1 snRNA snRNA -1 164 1 276 326 51 14 chr1 16434136 16434274 -226230079 - Charlie4 DNA MER1_type -4 1957 1815 3043 129 37 4 chr1 16434851 16435333 -226229020 + MER41E LTR ERV1 15 512 0 2780 139 49 46 chr1 16435621 16436191 -226228162 - LTR8A LTR ERV1 0 727 156 1924 153 9 18 chr1 16436203 16436543 -226227810 - MER1B DNA MER1_type -2 337 1 556 186 83 51 chr1 16436543 16436693 -226227660 - LTR8 LTR ERV1 -535 156 2 619 191 94 63 chr1 16436708 16437025 -226227328 - MER31B LTR ERV1 -21 445 1 942 215 21 34 chr1 16437043 16437198 -226227155 - MER89 LTR ERV1 -2 557 403 2009 117 7 11 chr1 16437198 16437523 -226226830 + AluY SINE Alu 1 324 0 942 215 21 34 chr1 16437523 16437577 -226226776 - MER89 LTR ERV1 -156 403 350 941 128 21 0 chr1 16437577 16437733 -226226620 + LTR49 LTR ERV1 1 295 -444 2461 206 12 25 chr1 16437741 16437898 -226226455 + MER72 LTR ERV1 1 159 -563 3697 102 47 22 chr1 16437898 16438058 -226226295 + MER51D LTR ERV1 1 156 -501 2484 85 0 3 chr1 16438058 16438364 -226225989 + AluSx SINE Alu 1 305 -7 3697 102 47 22 chr1 16438364 16438842 -226225511 + MER51D LTR ERV1 156 655 -2 2461 206 12 25 chr1 16438842 16439195 -226225158 + MER72 LTR ERV1 159 504 -218 1150 133 19 0 chr1 16439427 16439585 -226224768 - AluSg/x SINE Alu -18 292 132 640 13 0 0 chr1 16440049 16440124 -226224229 - tRNA-Asn-AAC tRNA tRNA -2 75 1 301 298 83 30 chr1 16441217 16441385 -226222968 - L1ME LINE L1 -320 5801 5625 669 266 78 6 chr1 16441406 16441902 -226222451 - L1MEc LINE L1 -4258 2138 1561 28 61 0 0 chr1 16442011 16442060 -226222293 + AT_rich Low_complexity Low_complexity 1 49 0 366 269 19 9 chr1 16443130 16443238 -226221115 - L2 LINE L2 -797 2517 2409 3051 146 29 22 chr1 16443278 16443869 -226220484 + LTR49 LTR ERV1 1 595 0 4076 138 56 20 chr1 16443871 16444603 -226219750 + LTR49-int LTR ERV1 1 758 -5573 1481 121 0 0 chr1 16444607 16444805 -226219548 + AluSg/x SINE Alu 114 311 -1 199 380 54 5 chr1 16444864 16445048 -226219305 + L3 LINE CR1 66 258 -1319 225 0 0 0 chr1 16445297 16445322 -226219031 + (T)n Simple_repeat Simple_repeat 1 25 0 317 380 20 20 chr1 16445795 16445945 -226218408 - MER5B DNA MER1_type -22 156 7 2402 82 0 31 chr1 16446207 16446524 -226217829 - AluY SINE Alu -4 307 1 1928 110 50 30 chr1 16446669 16446970 -226217383 + AluSp SINE Alu 1 307 -6 212 382 104 7 chr1 16447160 16447304 -226217049 + MIR3 SINE MIR 44 201 -7 2867 320 48 41 chr1 16448616 16449530 -226214823 - PRIMA41-int LTR ERV1 -2057 5699 4793 2154 130 3 7 chr1 16449530 16449838 -226214515 - AluSx SINE Alu -5 307 1 2867 320 48 41 chr1 16449838 16450272 -226214081 - PRIMA41-int LTR ERV1 -2963 4793 4336 198 0 0 0 chr1 16450272 16450294 -226214059 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 2867 320 48 41 chr1 16450294 16450561 -226213792 - PRIMA41-int LTR ERV1 -3420 4336 4072 1853 63 0 5 chr1 16450590 16450812 -226213541 - AluY SINE Alu -90 221 1 523 244 163 65 chr1 16450878 16451005 -226213348 + L1MEc LINE L1 1704 1817 -4579 1950 150 3 0 chr1 16451005 16451291 -226213062 + AluSx SINE Alu 1 287 -25 523 244 163 65 chr1 16451291 16451317 -226213036 + L1MEc LINE L1 1817 1839 -4557 315 0 0 0 chr1 16451317 16451352 -226213001 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 523 244 163 65 chr1 16451352 16451504 -226212849 + L1MEc LINE L1 1839 2040 -4356 392 231 107 58 chr1 16451722 16451843 -226212510 - AluJ/FLAM SINE Alu -215 87 1 530 81 0 0 chr1 16451863 16451937 -226212416 - tRNA-Asn-AAC tRNA tRNA -3 74 1 2156 129 0 13 chr1 16452624 16452934 -226211419 + AluSx SINE Alu 1 306 -6 376 176 0 0 chr1 16452984 16453052 -226211301 + tRNA-His-CAC tRNA tRNA 6 73 -2 620 183 73 0 chr1 16453549 16453686 -226210667 - U1 snRNA snRNA -14 151 5 576 28 0 0 chr1 16454744 16454816 -226209537 - tRNA-Glu-GAG tRNA tRNA -3 72 1 354 329 19 12 chr1 16455309 16455470 -226208883 + L2 LINE L2 2351 2512 -802 335 189 57 126 chr1 16455554 16455729 -226208624 - MER20 DNA MER1_type -56 163 1 1135 179 24 32 chr1 16456613 16456859 -226207494 - MLT1A1 LTR MaLR 0 365 122 2596 91 8 0 chr1 16457036 16457388 -226206965 - THE1A LTR MaLR 0 355 1 749 274 128 38 chr1 16457471 16457978 -226206375 + L1M4 LINE L1 4695 5247 -899 447 246 98 50 chr1 16459503 16459663 -226204690 + L1ME2 LINE L1 5000 5151 -1023 4879 173 23 14 chr1 16459663 16460574 -226203779 + MER49 LTR ERV1 5 923 0 447 246 98 50 chr1 16460574 16460641 -226203712 + L1ME2 LINE L1 5151 5213 -961 8778 46 23 101 chr1 16460641 16462591 -226201762 + L1PA8 LINE L1 4293 6172 0 447 246 98 50 chr1 16462591 16462810 -226201543 + L1ME2 LINE L1 5213 5471 -703 529 185 0 0 chr1 16462810 16462902 -226201451 - AluJb SINE Alu -11 301 210 * 733 110 0 0 chr1 16462898 16462998 -226201355 - AluSc SINE Alu -130 179 80 324 299 163 0 chr1 16463001 16463148 -226201205 + L1ME2 LINE L1 5461 5631 -531 731 231 91 49 chr1 16463234 16463542 -226200811 + L1ME2 LINE L1 5831 6151 -13 646 135 0 0 chr1 16463556 16463652 -226200701 + AluSg/x SINE Alu 192 287 -22 336 203 14 14 chr1 16464105 16464174 -226200179 - tRNA-His-CAC tRNA tRNA -3 72 4 2329 103 7 0 chr1 16464425 16464727 -226199626 - AluSx SINE Alu -8 304 1 650 0 0 0 chr1 16465403 16465474 -226198879 - tRNA-Gly-GGG tRNA tRNA -3 71 1 398 240 0 0 chr1 16467121 16467196 -226197157 - tRNA-Val-GTG tRNA tRNA -1 75 1 2167 89 0 18 chr1 16468520 16468802 -226195551 + AluSg SINE Alu 1 277 -33 180 0 0 0 chr1 16468804 16468824 -226195529 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 465 197 110 16 chr1 16469145 16469272 -226195081 + MLT1H1 LTR MaLR 404 555 0 591 232 126 50 chr1 16469340 16469388 -226194965 - MIR SINE MIR -17 245 202 2338 109 0 0 chr1 16469388 16469692 -226194661 - AluSx SINE Alu -8 304 1 591 232 126 50 chr1 16469692 16469841 -226194512 - MIR SINE MIR -60 202 33 494 31 16 0 chr1 16469848 16469912 -226194441 + (CTATA)n Simple_repeat Simple_repeat 5 69 0 331 296 45 40 chr1 16470819 16470995 -226193358 - MIR SINE MIR -36 226 50 451 276 188 10 chr1 16471278 16471470 -226192883 - MIR SINE MIR -34 228 3 400 194 0 0 chr1 16472917 16472989 -226191364 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 206 350 12 0 chr1 16473894 16473974 -226190379 + GA-rich Low_complexity Low_complexity 3 83 0 198 191 0 0 chr1 16475563 16475605 -226188748 + (TA)n Simple_repeat Simple_repeat 2 43 0 337 341 52 17 chr1 16475768 16476056 -226188297 + L1MC/D LINE L1 5490 5789 -386 205 287 116 8 chr1 16476129 16476258 -226188095 - MIR SINE MIR -16 246 104 1037 70 7 0 chr1 16477183 16477326 -226187027 + (TATATG)n Simple_repeat Simple_repeat 5 148 0 33 66 0 0 chr1 16477344 16477405 -226186948 + AT_rich Low_complexity Low_complexity 1 61 0 1307 194 24 27 chr1 16477477 16477771 -226186582 + AluJo SINE Alu 14 306 -6 1168 275 81 29 chr1 16477845 16478259 -226186094 - L1 LINE L1 -1443 4703 4259 308 94 19 0 chr1 16478259 16478312 -226186041 + (TG)n Simple_repeat Simple_repeat 2 55 0 1168 275 81 29 chr1 16478312 16478381 -226185972 - L1 LINE L1 -1887 4259 4195 432 295 54 27 chr1 16478378 16478787 -226185566 - L1MCa LINE L1 -4701 1683 1265 * 232 266 215 32 chr1 16478832 16479148 -226185205 - L1MCa LINE L1 -5207 1356 983 1553 147 8 26 chr1 16479148 16479414 -226184939 - AluSq SINE Alu -3 310 50 1073 267 26 8 chr1 16479717 16480106 -226184247 + L1M4 LINE L1 4859 5254 -892 497 313 21 10 chr1 16480109 16480301 -226184052 + MLT2D LTR ERVL 1 194 -220 254 203 68 0 chr1 16480326 16480400 -226183953 + MLT2B2 LTR ERVL 367 445 -70 192 40 0 0 chr1 16481631 16481656 -226182697 + (CA)n Simple_repeat Simple_repeat 1 25 0 528 314 45 48 chr1 16482023 16482465 -226181888 + L1MC4 LINE L1 7189 7629 -413 270 73 0 0 chr1 16483818 16483859 -226180494 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 281 157 36 12 chr1 16484265 16484348 -226180005 + CT-rich Low_complexity Low_complexity 2 86 0 221 167 19 0 chr1 16485420 16485474 -226178879 + GA-rich Low_complexity Low_complexity 1 55 0 369 0 0 0 chr1 16486976 16487017 -226177336 + (CA)n Simple_repeat Simple_repeat 2 42 0 16180 84 5 46 chr1 16489233 16490298 -226174055 + L1P LINE L1 875 1982 -4164 5466 45 9 0 chr1 16490298 16490950 -226173403 - L1PA4 LINE L1 -4 6151 5494 16180 84 5 46 chr1 16490950 16492337 -226172016 + L1P LINE L1 1982 3226 -2920 1797 160 0 0 chr1 16493051 16493326 -226171027 + AluSx SINE Alu 38 312 0 345 200 42 42 chr1 16496422 16496517 -226167836 + L1MB5 LINE L1 6071 6165 -9 399 279 7 14 chr1 16497518 16497665 -226166688 - MIR SINE MIR -21 241 96 1775 165 10 0 chr1 16497838 16498141 -226166212 - AluSg SINE Alu -4 306 1 223 277 15 15 chr1 16500515 16500580 -226163773 - MIR SINE MIR -62 146 82 225 309 96 7 chr1 16502165 16502301 -226162052 - MER5A DNA MER1_type -28 161 14 316 246 95 0 chr1 16502328 16502427 -226161926 - MIR SINE MIR -67 141 47 1978 162 10 0 chr1 16502572 16502881 -226161472 - AluJo SINE Alu 0 312 1 3667 210 35 12 chr1 16502985 16504012 -226160341 - L1MB7 LINE L1 -26 6158 5108 248 298 97 0 chr1 16504700 16504824 -226159529 - MIR SINE MIR -73 189 54 630 253 19 43 chr1 16505139 16505343 -226159010 - L1ME3 LINE L1 -1 6230 6032 2573 165 5 2 chr1 16505343 16505774 -226158579 - MSTB1 LTR MaLR 0 432 1 630 253 19 43 chr1 16505774 16505826 -226158527 - L1ME3 LINE L1 -199 6032 5980 1231 118 0 6 chr1 16505829 16505999 -226158354 + AluSq SINE Alu 1 169 -144 556 230 19 6 chr1 16506032 16506193 -226158160 - L1ME3 LINE L1 -707 5526 5364 210 71 0 0 chr1 16506197 16506225 -226158128 + (TA)n Simple_repeat Simple_repeat 1 28 0 312 83 0 0 chr1 16506351 16506399 -226157954 + (CA)n Simple_repeat Simple_repeat 2 49 0 1389 281 25 41 chr1 16506419 16507028 -226157325 - L1ME3 LINE L1 -1715 4500 3902 266 227 41 52 chr1 16507210 16507307 -226157046 - L1ME3 LINE L1 -3407 2808 2713 369 329 62 5 chr1 16507836 16508046 -226156307 - L1ME3 LINE L1 -6023 373 152 1916 230 61 62 chr1 16508159 16508784 -226155569 + MLT1E3 LTR MaLR 1 624 0 332 291 0 0 chr1 16509468 16509547 -226154806 - LTR16B LTR ERVL -385 79 1 626 280 45 20 chr1 16509567 16509767 -226154586 - ERVL LTR ERVL -3761 2003 1799 386 368 9 9 chr1 16509953 16510176 -226154177 - ERVL LTR ERVL -3546 1450 1228 478 249 94 48 chr1 16510214 16510499 -226153854 - LTR33 LTR ERVL -248 275 9 212 229 66 16 chr1 16511076 16511137 -226153216 + MIR3 SINE MIR 138 201 -7 1515 205 58 11 chr1 16512106 16512467 -226151886 + L1ME2 LINE L1 5524 5901 -263 269 284 13 84 chr1 16512576 16512731 -226151622 + MLT1-int LTR MaLR 1010 1153 -218 3177 184 36 3 chr1 16512732 16512845 -226151508 + L1MC2 LINE L1 5460 5568 -776 3177 196 25 8 chr1 16512845 16513508 -226150845 + L1MC2 LINE L1 5661 6341 -3 3177 184 36 3 chr1 16513508 16513520 -226150833 + L1MC2 LINE L1 5568 6341 -3 491 199 5 25 chr1 16513938 16514138 -226150215 + GA-rich Low_complexity Low_complexity 1 195 0 218 250 0 0 chr1 16515210 16515258 -226149095 - L2 LINE L2 -1 3312 3265 470 277 43 0 chr1 16515614 16515755 -226148598 - L2 LINE L2 -797 2517 2371 955 152 28 28 chr1 16515806 16515984 -226148369 + AluJo SINE Alu 83 260 -52 435 186 71 44 chr1 16516219 16516332 -226148021 - MLT1I LTR MaLR -17 392 277 198 0 0 0 chr1 16516402 16516424 -226147929 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 302 343 19 0 chr1 16516425 16516530 -226147823 - L2 LINE L2 -12 3301 3195 26 30 0 0 chr1 16516621 16516654 -226147699 + AT_rich Low_complexity Low_complexity 1 33 0 1799 174 10 0 chr1 16516661 16516955 -226147398 + AluJb SINE Alu 1 297 -15 25 31 0 0 chr1 16517366 16517398 -226146955 + AT_rich Low_complexity Low_complexity 1 32 0 323 185 0 0 chr1 16517398 16517452 -226146901 - FLAM SINE Alu -2 131 78 292 257 26 44 chr1 16517492 16517605 -226146748 + L1ME LINE L1 4842 4952 -1194 1875 159 7 10 chr1 16517609 16517918 -226146435 + AluJb SINE Alu 1 308 -4 701 236 150 24 chr1 16517931 16518053 -226146300 + L1ME LINE L1 5047 5152 -1018 1832 153 16 13 chr1 16518053 16518361 -226145992 + AluJb SINE Alu 1 309 -3 701 236 150 24 chr1 16518361 16518788 -226145565 + L1ME LINE L1 5152 5655 -515 260 148 277 59 chr1 16518788 16518843 -226145510 + L1ME3A LINE L1 6037 6079 -91 2010 147 3 0 chr1 16518843 16519142 -226145211 - AluJb SINE Alu -10 302 3 260 148 277 59 chr1 16519142 16519187 -226145166 + L1ME3A LINE L1 6079 6159 -11 2421 69 0 23 chr1 16520463 16520768 -226143585 + AluY SINE Alu 1 298 -13 994 148 7 0 chr1 16520768 16520940 -226143413 + AluJb SINE Alu 134 306 0 211 240 50 60 chr1 16522192 16522292 -226142061 - L2 LINE L2 -15 3257 3159 621 187 57 0 chr1 16522705 16522828 -226141525 + MER3 DNA MER1_type 80 209 0 281 204 0 0 chr1 16522785 16522834 -226141519 - MER3 DNA MER1_type -119 90 42 * 261 0 0 0 chr1 16523511 16523540 -226140813 + (TAA)n Simple_repeat Simple_repeat 1 29 0 522 250 188 10 chr1 16523732 16523924 -226140429 + MIR SINE MIR 3 228 -34 361 258 108 38 chr1 16524207 16524393 -226139960 + MIR SINE MIR 50 248 -14 180 0 0 0 chr1 16525056 16525076 -226139277 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2138 103 0 14 chr1 16525078 16525359 -226138994 - AluSg SINE Alu -33 277 1 261 284 52 26 chr1 16526210 16526326 -226138027 - Charlie4 DNA MER1_type -4 1957 1839 2528 55 3 7 chr1 16526605 16526915 -226137438 - AluY SINE Alu -2 309 1 862 206 12 0 chr1 16527001 16527166 -226137187 - AluJb SINE Alu -6 306 140 290 227 13 13 chr1 16527184 16527259 -226137094 + MER4B-int LTR ERV1 5766 5840 -918 2719 206 32 34 chr1 16527294 16527910 -226136443 - L1P LINE L1 -5521 625 11 481 132 13 0 chr1 16527927 16528003 -226136350 - AluJb SINE Alu -179 133 57 2074 161 44 3 chr1 16528004 16528370 -226135983 + LOR1b LTR ERV1 79 459 -2 383 125 125 0 chr1 16529159 16529223 -226135130 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 271 0 29 chr1 16530136 16530206 -226134147 + GA-rich Low_complexity Low_complexity 2 69 0 253 192 110 0 chr1 16531610 16531683 -226132670 + HAL1 LINE L1 2281 2361 -146 249 369 53 5 chr1 16532059 16532265 -226132088 + L1MC/D LINE L1 5574 5789 -2019 257 256 124 16 chr1 16532338 16532467 -226131886 - MIR SINE MIR -16 246 104 234 222 0 0 chr1 16533386 16533449 -226130904 + L1MA9 LINE L1 6214 6276 -36 191 88 29 0 chr1 16533453 16533487 -226130866 + (TA)n Simple_repeat Simple_repeat 2 36 0 2327 79 0 26 chr1 16533515 16533818 -226130535 - AluY SINE Alu -16 295 1 1201 221 11 7 chr1 16533976 16534252 -226130101 + AluJo SINE Alu 27 303 -9 1115 254 98 39 chr1 16534328 16534739 -226129614 - L1 LINE L1 -1443 4703 4258 488 68 14 0 chr1 16534739 16534812 -226129541 + (TG)n Simple_repeat Simple_repeat 2 75 0 1115 254 98 39 chr1 16534812 16534886 -226129467 - L1 LINE L1 -1888 4258 4190 437 291 73 49 chr1 16534878 16535287 -226129066 - L1MCa LINE L1 -4701 1683 1265 * 237 266 215 32 chr1 16535332 16535648 -226128705 - L1MCa LINE L1 -5207 1356 983 1553 147 8 26 chr1 16535648 16535914 -226128439 - AluSq SINE Alu -3 310 50 1073 267 26 8 chr1 16536217 16536606 -226127747 + L1M4 LINE L1 4859 5254 -892 497 313 21 10 chr1 16536609 16536801 -226127552 + MLT2D LTR ERVL 1 194 -220 254 203 68 0 chr1 16536826 16536900 -226127453 + MLT2B2 LTR ERVL 367 445 -70 261 0 0 0 chr1 16538131 16538160 -226126193 + (CA)n Simple_repeat Simple_repeat 1 29 0 528 314 45 48 chr1 16538527 16538969 -226125384 + L1MC4 LINE L1 7189 7629 -413 226 352 11 34 chr1 16538980 16539156 -226125197 - L1MC4 LINE L1 -411 7631 7460 261 0 0 0 chr1 16540327 16540356 -226123997 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 248 157 24 36 chr1 16540762 16540845 -226123508 + CT-rich Low_complexity Low_complexity 2 83 0 372 22 0 0 chr1 16541937 16541982 -226122371 + (CA)n Simple_repeat Simple_repeat 2 46 0 270 73 0 0 chr1 16543897 16543938 -226120415 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 281 157 36 12 chr1 16544344 16544427 -226119926 + CT-rich Low_complexity Low_complexity 2 86 0 351 0 0 0 chr1 16545519 16545558 -226118795 + (CA)n Simple_repeat Simple_repeat 2 40 0 221 167 19 0 chr1 16547059 16547113 -226117240 + GA-rich Low_complexity Low_complexity 1 55 0 270 73 0 0 chr1 16548608 16548649 -226115704 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 281 157 36 12 chr1 16549055 16549138 -226115215 + CT-rich Low_complexity Low_complexity 2 86 0 387 0 0 0 chr1 16550230 16550273 -226114080 + (CA)n Simple_repeat Simple_repeat 2 44 0 221 167 19 0 chr1 16551776 16551830 -226112523 + GA-rich Low_complexity Low_complexity 1 55 0 423 0 0 0 chr1 16553333 16553380 -226110973 + (CA)n Simple_repeat Simple_repeat 2 48 0 16322 80 5 48 chr1 16555597 16556668 -226107685 + L1P LINE L1 875 1991 -4155 5408 47 2 0 chr1 16556668 16557313 -226107040 - L1PA4 LINE L1 -16 6139 5494 16322 80 5 48 chr1 16557313 16558700 -226105653 + L1P LINE L1 1991 3226 -2920 1724 156 0 0 chr1 16559414 16559689 -226104664 + AluSx SINE Alu 38 312 0 404 242 0 0 chr1 16562786 16562881 -226101472 + L1MB5 LINE L1 6071 6165 -9 444 276 21 14 chr1 16563824 16563969 -226100384 - MIR SINE MIR -21 241 96 211 143 0 24 chr1 16564119 16564161 -226100192 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 1698 147 0 0 chr1 16564166 16564439 -226099914 - AluSg SINE Alu -37 273 1 1862 138 6 6 chr1 16565520 16565832 -226098521 - AluSx SINE Alu 0 312 1 2165 86 0 20 chr1 16565838 16566141 -226098212 - AluY SINE Alu -14 297 1 1037 181 5 5 chr1 16566227 16566420 -226097933 - AluJb SINE Alu -108 204 12 385 253 0 0 chr1 16569063 16569158 -226095195 + L1MB5 LINE L1 6071 6165 -9 502 265 7 14 chr1 16570105 16570252 -226094101 - MIR SINE MIR -21 241 96 326 73 0 18 chr1 16570405 16570460 -226093893 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1702 150 0 0 chr1 16570462 16570735 -226093618 - AluSg SINE Alu -37 273 1 1808 145 6 6 chr1 16571817 16572128 -226092225 - AluSx SINE Alu -1 311 1 2285 69 0 20 chr1 16572134 16572440 -226091913 - AluY SINE Alu -11 300 1 1037 181 5 5 chr1 16572526 16572719 -226091634 - AluJb SINE Alu -108 204 12 392 253 0 0 chr1 16575368 16575463 -226088890 + L1MB5 LINE L1 6071 6165 -9 488 272 7 14 chr1 16576470 16576617 -226087736 - MIR SINE MIR -21 241 96 1686 163 10 0 chr1 16576786 16577093 -226087260 - AluSg SINE Alu 0 310 1 248 277 15 15 chr1 16579466 16579531 -226084822 - MIR SINE MIR -62 146 82 208 372 83 0 chr1 16579638 16579759 -226084594 - MIR SINE MIR -14 248 118 266 307 96 36 chr1 16581081 16581247 -226083106 - MER5A DNA MER1_type 0 189 14 313 279 57 0 chr1 16581256 16581372 -226082981 - MIR SINE MIR -35 173 47 1794 165 10 0 chr1 16581510 16581807 -226082546 - AluJo SINE Alu -12 300 1 3629 226 39 11 chr1 16581912 16582992 -226081361 - L1MB7 LINE L1 -26 6158 5041 312 309 81 13 chr1 16583627 16583776 -226080577 - MIR SINE MIR -73 189 31 642 261 16 39 chr1 16584066 16584270 -226080083 - L1ME3 LINE L1 -1 6230 6032 2587 165 5 2 chr1 16584270 16584701 -226079652 - MSTB1 LTR MaLR 0 432 1 642 261 16 39 chr1 16584701 16584753 -226079600 - L1ME3 LINE L1 -199 6032 5980 1160 118 0 6 chr1 16584756 16584926 -226079427 + AluSq SINE Alu 1 169 -144 553 212 20 7 chr1 16584969 16585120 -226079233 - L1ME3 LINE L1 -715 5516 5364 192 77 0 0 chr1 16585124 16585150 -226079203 + (TA)n Simple_repeat Simple_repeat 1 26 0 420 67 0 0 chr1 16585276 16585336 -226079017 + (CA)n Simple_repeat Simple_repeat 2 61 0 1230 286 31 41 chr1 16585356 16585961 -226078392 - L1ME3 LINE L1 -1715 4500 3902 21 71 0 0 chr1 16585992 16586034 -226078319 + AT_rich Low_complexity Low_complexity 1 42 0 262 227 41 52 chr1 16586143 16586240 -226078113 - L1ME3 LINE L1 -3407 2808 2713 387 329 62 5 chr1 16586769 16586979 -226077374 - L1ME3 LINE L1 -6023 373 152 1920 230 61 62 chr1 16587092 16587717 -226076636 + MLT1E3 LTR MaLR 1 624 0 317 304 0 0 chr1 16588401 16588480 -226075873 - LTR16B LTR ERVL -385 79 1 639 280 45 20 chr1 16588500 16588700 -226075653 - ERVL LTR ERVL -3761 2003 1799 389 372 9 9 chr1 16588886 16589109 -226075244 - ERVL LTR ERVL -3546 1450 1228 499 253 94 48 chr1 16589147 16589432 -226074921 - LTR33 LTR ERVL -248 275 9 239 229 66 16 chr1 16590011 16590072 -226074281 + MIR3 SINE MIR 138 201 -7 1499 205 58 11 chr1 16591041 16591402 -226072951 + L1ME2 LINE L1 5524 5901 -263 284 280 13 83 chr1 16591511 16591668 -226072685 + MLT1-int LTR MaLR 1010 1155 -216 * 3130 193 27 6 chr1 16591666 16592443 -226071910 + L1MC2 LINE L1 5459 6341 -3 505 185 12 31 chr1 16592914 16593076 -226071277 + GA-rich Low_complexity Low_complexity 2 160 0 191 390 57 0 chr1 16593559 16593664 -226070689 + L2 LINE L2 3198 3308 -5 236 250 0 0 chr1 16594146 16594194 -226070159 - L2 LINE L2 -1 3312 3265 529 277 43 0 chr1 16594550 16594691 -226069662 - L2 LINE L2 -797 2517 2371 888 152 28 28 chr1 16594742 16594920 -226069433 + AluJo SINE Alu 83 260 -52 461 177 71 44 chr1 16595155 16595268 -226069085 - MLT1I LTR MaLR -17 392 277 404 339 17 0 chr1 16595345 16595460 -226068893 - L2 LINE L2 0 3272 3156 26 30 0 0 chr1 16595553 16595586 -226068767 + AT_rich Low_complexity Low_complexity 1 33 0 1737 166 10 0 chr1 16595593 16595888 -226068465 + AluJb SINE Alu 1 298 -14 25 31 0 0 chr1 16596299 16596331 -226068022 + AT_rich Low_complexity Low_complexity 1 32 0 322 185 0 0 chr1 16596331 16596385 -226067968 - FLAM SINE Alu -2 131 78 289 257 26 44 chr1 16596425 16596538 -226067815 + L1ME LINE L1 4842 4952 -1194 1747 156 6 16 chr1 16596542 16596856 -226067497 + AluJb SINE Alu 1 311 -1 702 239 150 23 chr1 16596869 16596991 -226067362 + L1ME LINE L1 5047 5152 -1018 1802 154 7 7 chr1 16596991 16597297 -226067056 + AluJb SINE Alu 1 306 -6 702 239 150 23 chr1 16597297 16597729 -226066624 + L1ME LINE L1 5152 5655 -515 256 148 277 59 chr1 16597729 16597784 -226066569 + L1ME3A LINE L1 6037 6079 -91 1853 152 3 0 chr1 16597784 16598081 -226066272 - AluJb SINE Alu -12 300 3 256 148 277 59 chr1 16598081 16598126 -226066227 + L1ME3A LINE L1 6079 6159 -11 933 282 90 55 chr1 16600060 16600681 -226063672 + L2 LINE L2 2403 3059 -213 1859 143 0 11 chr1 16601114 16601401 -226062952 + AluJb SINE Alu 1 284 -28 207 0 0 0 chr1 16601401 16601424 -226062929 + (GA)n Simple_repeat Simple_repeat 2 24 0 988 191 104 0 chr1 16601530 16601771 -226062582 + L1ME2 LINE L1 5889 6154 -10 482 388 41 8 chr1 16601805 16602050 -226062303 - MIR SINE MIR -5 257 5 222 37 0 0 chr1 16602081 16602108 -226062245 + (TA)n Simple_repeat Simple_repeat 1 27 0 2322 87 3 0 chr1 16602211 16602510 -226061843 + AluSx SINE Alu 1 300 -12 425 193 68 0 chr1 16602510 16602598 -226061755 - AluJo/FLAM SINE Alu -198 114 21 215 237 0 17 chr1 16602710 16602769 -226061584 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 232 311 37 7 chr1 16604306 16604441 -226059912 + L1ME LINE L1 5680 5818 -303 423 259 38 8 chr1 16605100 16605231 -226059122 - MIR SINE MIR -68 194 60 293 266 224 6 chr1 16605423 16605593 -226058760 - MIR3 SINE MIR -12 250 45 2131 116 0 0 chr1 16606617 16606918 -226057435 - AluY SINE Alu -10 301 1 293 377 14 0 chr1 16606968 16607106 -226057247 - MER91B DNA MER1_type -50 140 1 530 301 125 14 chr1 16607171 16607387 -226056966 - MIR SINE MIR -6 256 17 246 236 0 0 chr1 16608042 16608097 -226056256 + MIR SINE MIR 90 144 -118 2057 125 0 0 chr1 16608207 16608496 -226055857 + AluSq SINE Alu 1 289 -24 2285 67 3 0 chr1 16608503 16608819 -226055534 + AluSp SINE Alu 1 317 0 506 273 47 17 chr1 16608823 16608995 -226055358 - MIR SINE MIR -8 254 78 449 293 52 24 chr1 16609378 16609590 -226054763 - MIR SINE MIR -35 227 10 283 241 38 13 chr1 16610353 16610432 -226053921 + MIR SINE MIR 41 121 -87 2089 100 40 0 chr1 16610463 16610763 -226053590 + AluSx SINE Alu 1 312 0 1978 113 28 0 chr1 16611075 16611366 -226052987 - AluSx SINE Alu -13 299 1 415 205 82 16 chr1 16611368 16611490 -226052863 - MIR SINE MIR -117 145 16 249 261 0 0 chr1 16611999 16612064 -226052289 + (CAGAGA)n Simple_repeat Simple_repeat 5 69 0 321 233 94 0 chr1 16613235 16613297 -226051056 + MIR SINE MIR 104 159 -103 2212 98 0 0 chr1 16613297 16613593 -226050760 - AluSx SINE Alu -16 296 1 321 233 94 0 chr1 16613593 16613643 -226050710 + MIR SINE MIR 159 231 -31 841 259 81 0 chr1 16613730 16613966 -226050387 + MIR SINE MIR 8 262 0 211 229 0 0 chr1 16613987 16614035 -226050318 + (TTA)n Simple_repeat Simple_repeat 3 50 0 286 294 64 18 chr1 16614036 16614145 -226050208 + MIR SINE MIR 58 171 -91 1570 76 0 36 chr1 16614981 16615151 -226049202 - AluY SINE Alu -9 302 127 2284 84 0 0 chr1 16615151 16615448 -226048905 - AluY SINE Alu -13 298 2 1846 121 10 49 chr1 16615450 16615755 -226048598 - AluSq SINE Alu -18 295 3 1570 76 0 36 chr1 16615755 16615804 -226048549 - AluY SINE Alu -185 126 88 289 267 23 0 chr1 16617566 16617652 -226046701 - MIR SINE MIR -75 133 46 376 270 65 12 chr1 16617736 16617935 -226046418 + MIR SINE MIR 18 230 -32 313 299 0 0 chr1 16618278 16618355 -226045998 + MIR SINE MIR 73 149 -113 1978 139 7 0 chr1 16618427 16618730 -226045623 - AluSx SINE Alu -7 305 1 2057 106 0 3 chr1 16619209 16619522 -226044831 + AluSx SINE Alu 1 312 0 738 151 22 65 chr1 16619532 16619671 -226044682 + FLAM_A SINE Alu 1 133 0 1088 306 44 21 chr1 16619679 16620156 -226044197 + L1MC4a LINE L1 5429 5916 -1892 381 43 0 0 chr1 16620174 16620221 -226044132 + (TG)n Simple_repeat Simple_repeat 1 47 0 2210 107 0 19 chr1 16620273 16620591 -226043762 + AluSx SINE Alu 1 312 0 204 235 0 0 chr1 16620624 16620675 -226043678 + A-rich Low_complexity Low_complexity 1 51 0 2184 117 0 0 chr1 16620824 16621131 -226043222 - AluSx SINE Alu -5 307 1 31 58 0 0 chr1 16621131 16621183 -226043170 + AT_rich Low_complexity Low_complexity 1 52 0 1063 186 10 0 chr1 16621211 16621404 -226042949 + AluJo SINE Alu 97 291 -21 1055 223 116 79 chr1 16621439 16621858 -226042495 + L1MC5 LINE L1 7054 7456 -505 1850 114 33 4 chr1 16621858 16622171 -226042182 + AluSx SINE Alu 1 321 0 1055 223 116 79 chr1 16622171 16622260 -226042093 + L1MC5 LINE L1 7456 7540 -421 2092 125 0 3 chr1 16622260 16622565 -226041788 - AluSx SINE Alu -8 304 1 1055 223 116 79 chr1 16622565 16622638 -226041715 + L1MC5 LINE L1 7540 7659 -302 1105 212 9 0 chr1 16622640 16622871 -226041482 + AluJb SINE Alu 3 235 -77 2045 128 3 7 chr1 16623064 16623369 -226040984 + AluSq SINE Alu 1 304 -9 2320 89 0 0 chr1 16623375 16623678 -226040675 + AluSg SINE Alu 1 303 -7 221 275 101 0 chr1 16623683 16623752 -226040601 + MIR SINE MIR 108 183 -79 1388 185 82 4 chr1 16624629 16624899 -226039454 + AluJo SINE Alu 1 291 -21 189 0 0 0 chr1 16625162 16625183 -226039170 + (CAG)n Simple_repeat Simple_repeat 1 21 0 794 193 12 6 chr1 16625671 16625837 -226038516 + L1MA10 LINE L1 6168 6334 0 6364 98 26 53 chr1 16625903 16626372 -226037981 + L1MA2 LINE L1 5133 5613 -691 2218 110 0 0 chr1 16626372 16626680 -226037673 + AluSq SINE Alu 4 311 -2 2242 86 0 22 chr1 16626680 16626993 -226037360 + AluY SINE Alu 1 306 -5 6364 98 26 53 chr1 16626993 16627724 -226036629 + L1MA2 LINE L1 5611 6304 0 1852 145 7 20 chr1 16627805 16628108 -226036245 - AluJo SINE Alu -13 299 1 252 274 83 0 chr1 16629130 16629214 -226035139 + L2 LINE L2 3173 3263 -9 1039 208 51 0 chr1 16629658 16629855 -226034498 - MER3 DNA MER1_type 0 209 3 1054 216 82 0 chr1 16636088 16636357 -226027996 - Charlie1a DNA MER1_type -1116 339 49 27 0 0 0 chr1 16636623 16636650 -226027703 + AT_rich Low_complexity Low_complexity 1 27 0 292 273 144 7 chr1 16636952 16637091 -226027262 + MIR SINE MIR 96 253 -9 211 293 0 0 chr1 16637091 16637149 -226027204 + (TAG)n Simple_repeat Simple_repeat 1 58 0 327 379 68 4 chr1 16637468 16637703 -226026650 + MIR SINE MIR 1 250 -12 195 256 37 12 chr1 16638485 16638567 -226025786 - MIR3 SINE MIR -12 196 113 992 169 45 0 chr1 16639170 16639348 -226025005 - MER5A DNA MER1_type -1 188 3 515 88 0 0 chr1 16639725 16639793 -226024560 - Alu SINE Alu -15 295 228 1766 112 26 8 chr1 16639793 16640060 -226024293 - AluSx SINE Alu -40 272 1 242 252 98 49 chr1 16643405 16643528 -226020825 + L2 LINE L2 3144 3272 0 2124 103 0 0 chr1 16643745 16644026 -226020327 + AluSx SINE Alu 1 281 -31 261 57 0 0 chr1 16644026 16644061 -226020292 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 348 166 57 176 chr1 16644354 16644511 -226019842 + AluJb SINE Alu 88 206 -96 238 91 0 0 chr1 16644899 16644932 -226019421 - U1 snRNA snRNA 0 165 133 1540 220 121 58 chr1 16644932 16645468 -226018885 - LTR4 LTR ERV1 0 596 27 811 200 12 24 chr1 16646032 16646228 -226018125 - AluJb SINE Alu 0 312 140 1818 125 87 0 chr1 16646370 16646657 -226017696 - AluSx SINE Alu 0 312 1 458 187 110 0 chr1 16647455 16647546 -226016807 - AluSg/x SINE Alu -1 309 209 2239 241 10 23 chr1 16647547 16648065 -226016288 - MER87 LTR ERV1 -30 511 1 1944 108 54 14 chr1 16648105 16648401 -226015952 - AluSg SINE Alu -2 308 1 1930 136 4 0 chr1 16648470 16648781 -226015572 + AluSg SINE Alu 1 312 0 24 32 0 0 chr1 16648805 16648836 -226015517 + AT_rich Low_complexity Low_complexity 1 31 0 2037 135 0 0 chr1 16649005 16649309 -226015044 + AluSx SINE Alu 3 306 -6 21 36 0 0 chr1 16649319 16649347 -226015006 + AT_rich Low_complexity Low_complexity 1 28 0 634 167 20 0 chr1 16649350 16649452 -226014901 - AluJo/FRAM SINE Alu -33 279 176 591 198 0 0 chr1 16649452 16649563 -226014790 - FLAM_A SINE Alu -14 128 18 721 218 268 8 chr1 16649619 16649858 -226014495 - AluJo SINE Alu 0 302 2 21 36 0 0 chr1 16649858 16649886 -226014467 + AT_rich Low_complexity Low_complexity 1 28 0 393 22 0 0 chr1 16650942 16650988 -226013365 + (GA)n Simple_repeat Simple_repeat 1 46 0 1594 122 0 24 chr1 16651161 16651324 -226013029 - AluSx SINE Alu -14 298 141 249 33 0 0 chr1 16651324 16651354 -226012999 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1594 122 0 24 chr1 16651354 16651436 -226012917 - AluSx SINE Alu -171 141 59 488 227 80 13 chr1 16651922 16652072 -226012281 - REP3 LTR ERV -401 161 2 1541 0 0 0 chr1 16652578 16652742 -226011611 - U1 snRNA snRNA -1 164 1 307 319 51 14 chr1 16653126 16653264 -226011089 - Charlie4 DNA MER1_type -4 1957 1815 3055 131 37 4 chr1 16653843 16654325 -226010028 + MER41E LTR ERV1 15 512 0 331 350 83 0 chr1 16654440 16654597 -226009756 + HAL1 LINE L1 527 696 -1811 2554 142 49 46 chr1 16654613 16655183 -226009170 - LTR8A LTR ERV1 0 727 156 849 170 16 27 chr1 16655195 16655383 -226008970 - MER1B DNA MER1_type -2 337 152 1726 316 66 25 chr1 16656262 16657175 -226007178 - PRIMA41-int LTR ERV1 -2057 5699 4750 2583 99 8 0 chr1 16657300 16657652 -226006701 - THE1A LTR MaLR 0 355 1 533 306 120 34 chr1 16657737 16658244 -226006109 + L1M4 LINE L1 4697 5247 -899 1894 57 54 50 chr1 16659436 16659758 -226004595 + AluY SINE Alu 1 323 0 459 299 141 25 chr1 16660086 16660225 -226004128 + L1M4 LINE L1 4987 5108 -1038 2778 13 0 0 chr1 16660225 16660536 -226003817 + AluYb8 SINE Alu 1 311 -7 459 299 141 25 chr1 16660536 16660570 -226003783 + L1M4 LINE L1 5108 5137 -1009 4990 172 30 16 chr1 16660570 16661476 -226002877 + MER49 LTR ERV1 5 923 0 459 299 141 25 chr1 16661476 16661542 -226002811 + L1M4 LINE L1 5137 5255 -891 4974 40 0 0 chr1 16661543 16662214 -226002139 + L1P LINE L1 4293 4963 -1183 559 182 0 0 chr1 16662220 16662332 -226002021 + AluSg/x SINE Alu 193 304 0 310 232 0 0 chr1 16662769 16662838 -226001515 - tRNA-His-CAC tRNA tRNA -3 72 4 2025 117 10 23 chr1 16663091 16663399 -226000954 - AluSx SINE Alu -8 304 1 600 56 0 0 chr1 16664063 16664135 -226000218 - tRNA-Gly-GGG tRNA tRNA -2 72 1 234 81 0 0 chr1 16665757 16665794 -225998559 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 504 153 0 0 chr1 16665800 16665872 -225998481 - tRNA-Val-GTG tRNA tRNA -4 72 1 2002 104 4 14 chr1 16667197 16667477 -225996876 + AluSg SINE Alu 1 277 -33 180 0 0 0 chr1 16667479 16667499 -225996854 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 381 301 45 40 chr1 16668172 16668348 -225996005 - MIR SINE MIR -36 226 50 497 285 180 10 chr1 16668623 16668823 -225995530 - MIR SINE MIR -26 236 3 203 189 0 0 chr1 16668847 16668884 -225995469 + T-rich Low_complexity Low_complexity 1 37 0 212 0 0 35 chr1 16670255 16670284 -225994069 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr1 16670497 16670519 -225993834 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 16671141 16671161 -225993192 + (T)n Simple_repeat Simple_repeat 1 20 0 342 0 0 0 chr1 16672205 16672243 -225992110 + (TTA)n Simple_repeat Simple_repeat 1 38 0 554 195 57 0 chr1 16672926 16673049 -225991304 - MER3 DNA MER1_type 0 209 80 243 269 46 56 chr1 16673462 16673570 -225990783 + L2 LINE L2 3159 3265 -7 1425 143 6 146 chr1 16674814 16675007 -225989346 - AluJb SINE Alu 0 327 109 2367 80 0 0 chr1 16675007 16675306 -225989047 - AluSx SINE Alu -13 299 1 1425 143 6 146 chr1 16675306 16675317 -225989036 - AluJb SINE Alu -218 109 98 2147 118 0 7 chr1 16675317 16675614 -225988739 - AluSx SINE Alu -17 295 1 1425 143 6 146 chr1 16675614 16675648 -225988705 - AluJb SINE Alu -229 98 61 2306 97 0 0 chr1 16675648 16675948 -225988405 + AluSq SINE Alu 1 300 -13 2017 118 17 0 chr1 16675948 16676244 -225988109 + AluSq SINE Alu 1 301 -12 1425 143 6 146 chr1 16676244 16676375 -225987978 - AluJb SINE Alu -264 63 1 850 179 39 5 chr1 16676376 16676583 -225987770 + Charlie5 DNA MER1_type 2372 2585 -27 206 79 0 26 chr1 16678237 16678275 -225986078 + (CGGG)n Simple_repeat Simple_repeat 3 39 0 226 279 88 44 chr1 16680781 16680917 -225983436 + L2 LINE L2 2965 3106 -166 200 217 11 130 chr1 16681054 16681112 -225983241 + L2 LINE L2 3191 3236 -36 2308 100 0 3 chr1 16681112 16681422 -225982931 + AluSx SINE Alu 1 309 -3 200 217 11 130 chr1 16681422 16681455 -225982898 + L2 LINE L2 3236 3271 -1 211 309 108 36 chr1 16681471 16681610 -225982743 - MIR3 SINE MIR -47 161 13 * 438 181 21 32 chr1 16681608 16681702 -225982651 + MER5A DNA MER1_type 14 106 -83 1648 95 0 13 chr1 16681886 16682117 -225982236 + AluSg/x SINE Alu 83 310 0 201 250 0 83 chr1 16683866 16683986 -225980367 + G-rich Low_complexity Low_complexity 5 114 0 207 219 47 0 chr1 16684923 16684987 -225979366 - MIR SINE MIR -87 121 55 222 37 0 0 chr1 16685319 16685346 -225979007 + (CGG)n Simple_repeat Simple_repeat 2 28 0 214 232 49 0 chr1 16685563 16685645 -225978708 + (CGGG)n Simple_repeat Simple_repeat 4 89 0 250 234 39 0 chr1 16688599 16688676 -225975677 + G-rich Low_complexity Low_complexity 5 84 0 278 316 13 19 chr1 16689307 16689462 -225974891 + (TG)n Simple_repeat Simple_repeat 2 155 0 223 233 128 12 chr1 16689995 16690081 -225974272 + MIR SINE MIR 45 140 -68 350 302 63 16 chr1 16691056 16691182 -225973171 + MIR SINE MIR 31 162 -100 2120 103 34 0 chr1 16691230 16691521 -225972832 - AluSq SINE Alu -12 301 1 2165 69 0 35 chr1 16691530 16691843 -225972510 - AluSc SINE Alu 0 303 1 208 368 23 0 chr1 16691878 16691965 -225972388 + MIR SINE MIR 173 261 -1 208 347 199 0 chr1 16692081 16692277 -225972076 - L3 LINE CR1 -63 1514 1280 236 400 103 0 chr1 16692611 16692786 -225971567 + MIR SINE MIR 5 197 -65 219 273 70 0 chr1 16692934 16693032 -225971321 + MIR SINE MIR 63 145 -63 22 35 0 0 chr1 16693304 16693333 -225971020 + GC_rich Low_complexity Low_complexity 1 29 0 248 198 10 59 chr1 16693575 16693676 -225970677 + (CCCCG)n Simple_repeat Simple_repeat 5 100 0 2357 60 17 3 chr1 16694106 16694406 -225969947 - AluSg SINE Alu -6 304 1 199 332 122 53 chr1 16694497 16694744 -225969609 + L2 LINE L2 2914 3177 -95 477 225 58 68 chr1 16694750 16694941 -225969412 - MER53 DNA DNA 0 189 1 2122 134 0 0 chr1 16695009 16695316 -225969037 - AluSx SINE Alu -5 307 1 186 231 115 0 chr1 16695467 16695519 -225968834 - MIR SINE MIR -137 125 68 180 243 0 0 chr1 16696828 16696865 -225967488 + MIR SINE MIR 218 254 -8 1740 169 0 3 chr1 16697116 16697411 -225966942 + AluJo SINE Alu 18 311 -1 22 56 0 0 chr1 16697436 16697472 -225966881 + AT_rich Low_complexity Low_complexity 1 36 0 684 324 89 0 chr1 16697475 16697700 -225966653 - MIR SINE MIR -1 261 17 199 286 146 56 chr1 16697867 16698045 -225966308 + MIR SINE MIR 51 244 -18 181 336 138 37 chr1 16698853 16699121 -225965232 + L2 LINE L2 2874 3168 -145 1916 122 21 11 chr1 16699661 16699948 -225964405 + AluSx SINE Alu 1 290 -22 287 251 185 20 chr1 16699968 16700163 -225964190 - L2 LINE L2 -200 3113 2887 1145 139 0 0 chr1 16700240 16700405 -225963948 - AluSg/x SINE Alu -16 296 132 2116 120 0 3 chr1 16700406 16700698 -225963655 - AluSg SINE Alu -19 291 1 2351 81 0 3 chr1 16700711 16701020 -225963333 - AluSg SINE Alu -1 309 2 210 246 0 62 chr1 16701813 16701878 -225962475 - MIR SINE MIR -86 122 62 492 236 36 0 chr1 16701911 16702021 -225962332 + L2 LINE L2 3155 3268 -4 197 267 33 0 chr1 16702022 16702082 -225962271 + MIR SINE MIR 130 191 -71 2182 91 3 67 chr1 16702124 16702501 -225961852 - AluSx SINE Alu 0 356 1 1297 82 6 0 chr1 16703030 16703217 -225961136 - AluSp SINE Alu -30 283 125 2452 79 0 22 chr1 16706983 16707301 -225957052 - AluY SINE Alu 0 311 1 1416 160 30 4 chr1 16709318 16709581 -225954772 + L1M2 LINE L1 5389 5658 -633 896 86 17 0 chr1 16710142 16710259 -225954094 - AluSg/x SINE Alu -26 286 168 202 206 0 0 chr1 16710272 16710306 -225954047 + polypurine Low_complexity Low_complexity 1 34 0 380 233 0 0 chr1 16711357 16711430 -225952923 + tRNA-Val-GTG tRNA tRNA 1 73 -3 554 56 0 0 chr1 16713080 16713151 -225951202 + tRNA-Gly-GGG tRNA tRNA 4 74 0 2331 106 7 0 chr1 16713824 16714127 -225950226 + AluSx SINE Alu 1 305 -7 334 232 0 0 chr1 16714380 16714449 -225949904 + tRNA-His-CAC tRNA tRNA 4 72 -3 596 167 0 0 chr1 16714896 16714998 -225949355 - AluSg/x SINE Alu -16 294 193 710 237 91 49 chr1 16715012 16715320 -225949033 - L1ME2 LINE L1 -13 6151 5831 313 304 155 0 chr1 16715406 16715554 -225948799 - L1ME2 LINE L1 -531 5631 5461 706 110 0 0 chr1 16715557 16715657 -225948696 + AluSc SINE Alu 80 179 -130 559 154 0 0 chr1 16715652 16715743 -225948610 + AluJb SINE Alu 209 299 -13 * 414 274 29 20 chr1 16715745 16715949 -225948404 - L1ME2 LINE L1 -709 5469 5264 8190 51 9 0 chr1 16715963 16717914 -225946439 - L1PA8 LINE L1 0 6172 4293 390 290 156 25 chr1 16717915 16717981 -225946372 - L1ME2 LINE L1 -891 5255 5199 4669 174 21 13 chr1 16717981 16718893 -225945460 - MER49 LTR ERV1 0 923 5 390 290 156 25 chr1 16718893 16719064 -225945289 - L1ME2 LINE L1 -947 5199 4987 702 278 130 39 chr1 16720578 16721085 -225943268 - L1M4 LINE L1 -899 5247 4695 2482 88 8 0 chr1 16721168 16721520 -225942833 + THE1A LTR MaLR 1 355 0 1107 179 24 32 chr1 16721697 16721943 -225942410 + MLT1A1 LTR MaLR 122 365 0 331 200 51 120 chr1 16722827 16723002 -225941351 + MER20 DNA MER1_type 1 163 -56 354 329 19 12 chr1 16723086 16723247 -225941106 - L2 LINE L2 -802 2512 2351 551 56 0 0 chr1 16723740 16723812 -225940541 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 630 194 72 0 chr1 16724867 16725006 -225939347 + U1 snRNA snRNA 3 151 -14 376 176 0 0 chr1 16725505 16725573 -225938780 - tRNA-His-CAC tRNA tRNA -2 73 6 2152 132 0 13 chr1 16725623 16725933 -225938420 - AluSx SINE Alu -6 306 1 552 68 0 0 chr1 16726620 16726694 -225937659 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 371 236 89 49 chr1 16726714 16726837 -225937516 + FLAM_C SINE Alu 1 128 -5 571 247 195 21 chr1 16727055 16727215 -225937138 - L1MEc LINE L1 -4356 2040 1909 1866 152 6 40 chr1 16727215 16727537 -225936816 - AluSx SINE Alu -1 311 1 571 247 195 21 chr1 16727537 16727663 -225936690 - L1MEc LINE L1 -4487 1909 1704 1782 68 5 5 chr1 16727727 16727948 -225936405 + AluY SINE Alu 1 221 -90 667 307 11 80 chr1 16727977 16728426 -225935927 + PRIMA41-int LTR ERV1 4072 4489 -3267 311 308 42 11 chr1 16728499 16728679 -225935674 + PRIMA41-int LTR ERV1 4588 4738 -3018 303 28 0 0 chr1 16779617 16779653 -225884700 + (CA)n Simple_repeat Simple_repeat 2 37 0 2101 128 0 0 chr1 16782323 16782628 -225881725 - AluSx SINE Alu 0 305 1 560 279 29 29 chr1 16783350 16783522 -225880831 + MIR SINE MIR 34 205 -57 511 241 60 60 chr1 16785097 16785263 -225879090 + MIR SINE MIR 20 185 -77 468 250 109 0 chr1 16785340 16785468 -225878885 - MER63 DNA MER1_type -68 768 1 29 0 0 0 chr1 16785929 16785958 -225878395 + AT_rich Low_complexity Low_complexity 1 29 0 2120 174 14 3 chr1 16786242 16786603 -225877750 - MLT1A1 LTR MaLR 0 365 1 388 214 106 88 chr1 16788247 16788360 -225875993 + MIR SINE MIR 48 162 -100 903 180 51 88 chr1 16788360 16788577 -225875776 + MER63A DNA MER1_type 1 209 -1 388 214 106 88 chr1 16788577 16788660 -225875693 + MIR SINE MIR 162 242 -20 197 308 63 63 chr1 16790062 16790205 -225874148 - L2 LINE L2 -225 3047 2905 1823 172 0 25 chr1 16790343 16790663 -225873690 + AluJo SINE Alu 1 312 0 1942 149 10 0 chr1 16790902 16791190 -225873163 - AluSx SINE Alu -21 291 1 339 268 94 0 chr1 16791200 16791214 -225873139 - L1MA10 LINE L1 -2 6332 6319 1164 216 50 84 chr1 16791214 16791654 -225872699 - L1ME2 LINE L1 -8 6156 5732 193 318 61 53 chr1 16791680 16791812 -225872541 + L2 LINE L2 3136 3268 -4 207 69 0 0 chr1 16792657 16792686 -225871667 + (TG)n Simple_repeat Simple_repeat 1 29 0 183 282 0 0 chr1 16793721 16793760 -225870593 + L2 LINE L2 3148 3186 -86 193 248 368 0 chr1 16793828 16793945 -225870408 - MIR SINE MIR -90 172 13 2458 77 3 10 chr1 16794442 16794755 -225869598 + AluY SINE Alu 1 311 0 291 351 68 14 chr1 16795762 16795910 -225868443 - L2 LINE L2 -2 3270 3115 279 0 0 0 chr1 16796024 16796055 -225868298 + (TG)n Simple_repeat Simple_repeat 1 31 0 1158 184 128 3 chr1 16797252 16797540 -225866813 - MER33 DNA MER1_type 0 324 1 431 265 176 10 chr1 16798234 16798438 -225865915 - Charlie5 DNA MER1_type -27 2585 2348 195 129 0 0 chr1 16799312 16799343 -225865010 + (TCC)n Simple_repeat Simple_repeat 3 33 0 613 255 148 5 chr1 16801929 16802125 -225862228 + MIR SINE MIR 36 259 -3 705 298 109 42 chr1 16802148 16802969 -225861384 - L2 LINE L2 -163 3109 2216 411 294 70 35 chr1 16805049 16805250 -225859103 + L3 LINE CR1 1369 1576 -1 2163 107 55 0 chr1 16805258 16805549 -225858804 + AluSg SINE Alu 1 307 -3 242 248 262 41 chr1 16806335 16806480 -225857873 - MIR SINE MIR -3 259 83 2172 55 0 4 chr1 16806869 16807124 -225857229 - AluY SINE Alu -7 304 51 258 32 0 0 chr1 16807157 16807188 -225857165 + (TG)n Simple_repeat Simple_repeat 2 32 0 837 273 59 70 chr1 16807360 16807906 -225856447 - L1MEd LINE L1 -5141 978 439 333 278 131 5 chr1 16807920 16808111 -225856242 - L1MEd LINE L1 -5903 216 2 864 115 37 84 chr1 16809345 16809393 -225854960 - L1MB3 LINE L1 -3 6180 6131 2273 107 7 3 chr1 16809393 16809693 -225854660 - AluSp SINE Alu -12 301 1 864 115 37 84 chr1 16809693 16809835 -225854518 - L1MB3 LINE L1 -52 6131 5999 233 274 128 39 chr1 16810628 16810730 -225853623 + L2 LINE L2 3183 3293 -20 22 0 0 0 chr1 16810894 16810916 -225853437 + AT_rich Low_complexity Low_complexity 1 22 0 331 277 9 62 chr1 16811743 16811855 -225852498 - L2 LINE L2 -11 3261 3156 23 0 0 0 chr1 16812473 16812496 -225851857 + AT_rich Low_complexity Low_complexity 1 23 0 3333 46 16 2 chr1 16812496 16812929 -225851424 - L1PA5 LINE L1 0 6154 5716 2142 279 32 17 chr1 16812929 16813418 -225850935 - MER69 DNA AcHobo -1866 660 157 2320 117 3 0 chr1 16813418 16813718 -225850635 - AluSx SINE Alu -11 301 1 2142 279 32 17 chr1 16813718 16813878 -225850475 - MER69 DNA AcHobo -2369 157 1 1708 182 57 25 chr1 16815118 16815164 -225849189 - L1MB3 LINE L1 -210 5973 5930 2478 70 3 3 chr1 16815164 16815462 -225848891 - AluY SINE Alu -13 298 1 1708 182 57 25 chr1 16815462 16815817 -225848536 - L1MB3 LINE L1 -253 5930 5559 1140 293 75 19 chr1 16815830 16816308 -225848045 + L2 LINE L2 2288 2792 -522 1060 201 116 157 chr1 16816308 16816651 -225847702 + MLT1A1 LTR MaLR 1 326 -70 2001 154 3 6 chr1 16816651 16816963 -225847390 - AluSx SINE Alu -1 311 1 1060 201 116 157 chr1 16816963 16817032 -225847321 + MLT1A1 LTR MaLR 326 396 0 552 301 125 28 chr1 16817087 16817439 -225846914 + L2 LINE L2 2888 3273 -40 384 223 97 0 chr1 16817835 16817938 -225846415 + MER81 DNA DNA 2 114 0 420 277 15 8 chr1 16818520 16818650 -225845703 + MER94 DNA DNA 2 132 -2 291 281 34 0 chr1 16819351 16819440 -225844913 + L2 LINE L2 3181 3272 0 299 278 80 53 chr1 16819529 16819716 -225844637 - MIR3 SINE MIR -8 200 9 237 267 85 80 chr1 16820065 16820241 -225844112 + MIR SINE MIR 77 253 -9 194 133 0 0 chr1 16820852 16820882 -225843471 - L2 LINE L2 -18 3295 3266 817 148 0 125 chr1 16821164 16821380 -225842973 + MER53 DNA DNA 1 189 0 183 42 0 0 chr1 16823103 16823127 -225841226 + (A)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 16823438 16823461 -225840892 + (TA)n Simple_repeat Simple_repeat 2 24 0 2604 30 0 7 chr1 16823475 16823775 -225840578 + AluY SINE Alu 1 298 -13 295 211 39 29 chr1 16824336 16824440 -225839913 - MLT1E2 LTR MaLR -200 305 201 488 233 0 92 chr1 16824692 16824855 -225839498 - MLT1E2 LTR MaLR -469 157 10 503 250 152 34 chr1 16824998 16825202 -225839151 - MIR SINE MIR -23 239 12 408 297 21 21 chr1 16826361 16826506 -225837847 + MIR SINE MIR 20 164 -98 625 216 30 129 chr1 16827827 16827859 -225836494 - MIR SINE MIR -18 244 210 1713 183 7 13 chr1 16827859 16828160 -225836193 + AluJo SINE Alu 1 299 -13 625 216 30 129 chr1 16828160 16828391 -225835962 - MIR SINE MIR -52 210 7 1130 184 60 0 chr1 16829841 16830059 -225834294 + LTR49 LTR ERV1 1 231 -364 674 119 25 17 chr1 16830068 16830186 -225834167 + AluSq/x SINE Alu 23 141 -171 2411 65 3 19 chr1 16830559 16830869 -225833484 - AluY SINE Alu -6 305 1 28 29 0 0 chr1 16831308 16831343 -225833010 + AT_rich Low_complexity Low_complexity 1 35 0 1344 266 148 43 chr1 16831435 16832013 -225832340 + L2 LINE L2 2282 2798 -515 2164 116 7 0 chr1 16832013 16832490 -225831863 - AluSq SINE Alu 0 484 6 1344 266 148 43 chr1 16832490 16832677 -225831676 + L2 LINE L2 2798 2964 -349 2283 102 0 13 chr1 16832677 16832992 -225831361 - AluY SINE Alu 0 311 1 1344 266 148 43 chr1 16832992 16833132 -225831221 + L2 LINE L2 2964 3308 -5 416 241 36 66 chr1 16833153 16833319 -225831034 + MIR SINE MIR 9 169 -93 192 208 42 0 chr1 16833297 16833345 -225831008 + L2 LINE L2 3216 3265 -7 * 242 365 10 0 chr1 16833940 16834044 -225830309 + L3 LINE CR1 1376 1480 -97 1618 163 39 14 chr1 16834303 16834586 -225829767 + AluJo SINE Alu 1 290 -22 231 114 0 0 chr1 16834591 16834626 -225829727 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 263 179 60 0 chr1 16835076 16835143 -225829210 + CT-rich Low_complexity Low_complexity 2 72 0 2505 82 0 0 chr1 16835243 16835547 -225828806 - AluSg SINE Alu -6 304 1 2332 103 0 0 chr1 16836039 16836331 -225828022 + AluSg SINE Alu 1 292 -18 211 209 23 0 chr1 16836771 16836814 -225827539 + L2 LINE L2 3224 3267 -5 253 304 137 25 chr1 16837601 16837762 -225826591 + MIR SINE MIR 77 255 -7 898 282 72 54 chr1 16838446 16838955 -225825398 + L2 LINE L2 2659 3157 -156 2372 86 0 3 chr1 16838955 16839245 -225825108 + AluSx SINE Alu 1 289 -23 192 111 0 0 chr1 16839248 16839284 -225825069 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 898 282 72 54 chr1 16839284 16839419 -225824934 + L2 LINE L2 3158 3310 -3 597 239 0 0 chr1 16839474 16839591 -225824762 - FRAM SINE Alu -43 133 17 491 294 95 12 chr1 16839634 16839865 -225824488 - MIR SINE MIR -12 250 3 597 303 117 26 chr1 16840071 16840490 -225823863 + L2 LINE L2 2624 3117 -196 1908 134 14 10 chr1 16840490 16840781 -225823572 - AluJo SINE Alu -20 292 1 597 303 117 26 chr1 16840781 16840975 -225823378 + L2 LINE L2 3117 3292 -21 180 224 20 41 chr1 16844080 16844129 -225820224 - MIR SINE MIR -73 135 88 277 294 0 0 chr1 16844613 16844681 -225819672 + MIR SINE MIR 36 103 -105 2249 80 28 0 chr1 16844877 16845163 -225819190 - AluSg SINE Alu -16 294 1 302 183 14 0 chr1 16848985 16849056 -225815297 + CT-rich Low_complexity Low_complexity 1 72 0 360 43 0 0 chr1 16849399 16849445 -225814908 + (CA)n Simple_repeat Simple_repeat 1 46 0 342 0 0 0 chr1 16854560 16854598 -225809755 + (CA)n Simple_repeat Simple_repeat 1 38 0 233 177 242 0 chr1 16856231 16856293 -225808060 + L2 LINE L2 3123 3199 -73 288 267 86 48 chr1 16856363 16856468 -225807885 + L2 LINE L2 3139 3247 -25 2222 116 0 10 chr1 16856583 16856894 -225807459 - AluSc SINE Alu -1 308 1 257 304 156 30 chr1 16857164 16857401 -225806952 + L2 LINE L2 2124 2390 -924 261 234 123 64 chr1 16858117 16858288 -225806065 + L3b LINE CR1 1202 1382 -201 197 0 71 0 chr1 16858320 16858348 -225806005 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 686 276 6 17 chr1 16859426 16859600 -225804753 + MER5B DNA MER1_type 7 178 0 2271 100 0 3 chr1 16860350 16860649 -225803704 - AluSg SINE Alu -12 298 1 1802 168 7 10 chr1 16860799 16861097 -225803256 + AluJo SINE Alu 1 297 -15 386 227 163 7 chr1 16861099 16861240 -225803113 - MIR SINE MIR 0 262 100 256 339 24 16 chr1 16861246 16861373 -225802980 - L2 LINE L2 -788 2526 2399 198 327 0 0 chr1 16861941 16861996 -225802357 - L2 LINE L2 -2 3270 3216 446 265 170 27 chr1 16863588 16863956 -225800397 + L2 LINE L2 2628 3069 -244 389 187 13 0 chr1 16863991 16864066 -225800287 - MLT1A1 LTR MaLR -1 364 289 213 39 0 0 chr1 16864193 16864219 -225800134 + (TG)n Simple_repeat Simple_repeat 2 27 0 639 273 118 30 chr1 16864398 16864540 -225799813 + MLT1J1 LTR MaLR 12 140 -306 2204 115 3 0 chr1 16864540 16864836 -225799517 + AluSq SINE Alu 1 297 -16 639 273 118 30 chr1 16864836 16864990 -225799363 + MLT1J1 LTR MaLR 140 334 -112 378 309 73 6 chr1 16865376 16865541 -225798812 + MER117 DNA MER1_type 4 179 -18 182 338 6 88 chr1 16865586 16865746 -225798607 - MER5A DNA MER1_type -26 163 17 294 266 0 0 chr1 16865824 16865903 -225798450 + MIR SINE MIR 135 213 -49 420 322 75 11 chr1 16867404 16867578 -225796775 + MIR SINE MIR 35 219 -43 201 311 29 29 chr1 16868118 16868221 -225796132 + L2 LINE L2 2951 3053 -219 186 43 0 0 chr1 16868232 16868255 -225796098 + (TC)n Simple_repeat Simple_repeat 2 24 0 195 184 26 0 chr1 16868383 16868421 -225795932 + L2 LINE L2 3267 3305 -8 303 287 75 78 chr1 16868591 16869068 -225795285 - LTR33 LTR ERVL -5 516 41 1332 194 81 4 chr1 16869488 16869746 -225794607 + AluJo SINE Alu 1 278 -34 300 250 40 0 chr1 16870923 16871023 -225793330 + L1ME4a LINE L1 6014 6117 -4 305 191 0 29 chr1 16871167 16871235 -225793118 + MIR SINE MIR 173 238 -24 202 204 45 0 chr1 16871202 16871246 -225793107 + L2 LINE L2 3210 3255 -17 * 1208 160 109 138 chr1 16871666 16872042 -225792311 - MLT1A1 LTR MaLR 0 365 1 598 265 38 11 chr1 16872073 16872258 -225792095 - MIR SINE MIR -36 226 37 801 181 0 43 chr1 16872430 16872568 -225791785 - FLAM_C SINE Alu -1 132 1 1677 168 6 44 chr1 16872570 16872886 -225791467 - AluJb SINE Alu -8 304 1 199 217 0 50 chr1 16873510 16873570 -225790783 - MIR SINE MIR -64 144 88 610 92 0 82 chr1 16876176 16876274 -225788079 + HY4 scRNA scRNA 1 90 -3 540 68 0 0 chr1 16876274 16876347 -225788006 + (GAA)n Simple_repeat Simple_repeat 1 73 0 216 329 42 114 chr1 16876508 16876658 -225787695 + L2 LINE L2 2825 2953 -360 2811 29 0 0 chr1 16876658 16876972 -225787381 - AluYb8 SINE Alu -4 314 1 216 329 42 114 chr1 16876972 16877058 -225787295 + L2 LINE L2 2953 3044 -269 3442 118 14 27 chr1 16877058 16877576 -225786777 - MER9 LTR ERVK 0 511 1 1534 203 17 48 chr1 16878444 16878798 -225785555 - MLT1A1 LTR MaLR -2 363 21 312 280 83 32 chr1 16878966 16879338 -225785015 + L1ME3A LINE L1 4346 4736 -1410 776 235 28 33 chr1 16879366 16879579 -225784774 - MER20 DNA MER1_type -4 215 4 319 278 61 33 chr1 16879581 16879793 -225784560 + L1ME3A LINE L1 5653 5870 -300 248 197 66 26 chr1 16880527 16880603 -225783750 - MADE1 DNA Mariner 0 80 2 229 172 17 17 chr1 16881220 16881278 -225783075 + (TA)n Simple_repeat Simple_repeat 1 58 0 243 0 0 0 chr1 16881656 16881683 -225782670 + (CA)n Simple_repeat Simple_repeat 2 28 0 211 270 99 45 chr1 16882800 16882911 -225781442 + MIR SINE MIR 31 147 -115 25 0 0 0 chr1 16883010 16883035 -225781318 + AT_rich Low_complexity Low_complexity 1 25 0 218 218 40 97 chr1 16885647 16885771 -225778582 - MIR3 SINE MIR -6 202 86 224 279 81 54 chr1 16886259 16886370 -225777983 + L2 LINE L2 3145 3258 -14 195 297 40 0 chr1 16886855 16886929 -225777424 + MIR SINE MIR 185 261 -1 25 51 0 0 chr1 16886929 16886968 -225777385 + AT_rich Low_complexity Low_complexity 1 39 0 1395 245 58 65 chr1 16888584 16889442 -225774911 + L1ME1 LINE L1 3127 3978 -2168 1166 261 61 27 chr1 16889495 16890019 -225774334 + L1ME1 LINE L1 5394 5935 -231 606 289 34 15 chr1 16890305 16890509 -225773844 - MER63A DNA MER1_type 0 210 3 718 192 151 32 chr1 16891336 16891555 -225772798 - THE1C LTR MaLR -130 245 1 1270 236 13 3 chr1 16891555 16891856 -225772497 - L1 LINE L1 -2372 5193 4890 1666 128 0 12 chr1 16891860 16892110 -225772243 + THE1C LTR MaLR 129 375 0 1113 254 95 41 chr1 16892120 16893131 -225771222 - L1 LINE L1 -3552 4013 2932 8982 129 54 0 chr1 16893231 16894570 -225769783 + THE1A-int LTR MaLR 164 1574 -6 1229 195 4 16 chr1 16894575 16894821 -225769532 + THE1A LTR MaLR 1 243 -112 934 145 101 0 chr1 16894946 16895105 -225769248 - AluSg SINE Alu -130 180 6 192 111 0 0 chr1 16895115 16895151 -225769202 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 2351 68 0 0 chr1 16895153 16895432 -225768921 - AluY SINE Alu -32 279 1 9537 85 12 7 chr1 16895437 16896688 -225767665 + HERVL LTR ERVL 119 1375 -4279 352 222 108 0 chr1 16897028 16897143 -225767210 + AluSp SINE Alu 127 206 -97 261 61 0 0 chr1 16897517 16897550 -225766803 - U1 snRNA snRNA 0 165 133 1627 184 134 74 chr1 16897550 16898088 -225766265 - LTR4 LTR ERV1 0 596 27 828 203 14 0 chr1 16898678 16898848 -225765505 - AluJb SINE Alu 0 311 140 1751 111 148 0 chr1 16898989 16899259 -225765094 - AluSg SINE Alu 0 310 1 2145 121 0 0 chr1 16899328 16899629 -225764724 + AluSg SINE Alu 1 301 0 24 32 0 0 chr1 16899664 16899695 -225764658 + AT_rich Low_complexity Low_complexity 1 31 0 2125 126 0 0 chr1 16899864 16900157 -225764196 + AluSx SINE Alu 3 295 -17 21 36 0 0 chr1 16900178 16900206 -225764147 + AT_rich Low_complexity Low_complexity 1 28 0 655 167 20 0 chr1 16900209 16900311 -225764042 - FRAM SINE Alu -33 143 40 607 189 0 0 chr1 16900316 16900422 -225763931 - FLAM_A SINE Alu -19 123 18 743 176 339 80 chr1 16900477 16900716 -225763637 - AluJo SINE Alu 0 302 2 21 36 0 0 chr1 16900716 16900744 -225763609 + AT_rich Low_complexity Low_complexity 1 28 0 498 33 0 0 chr1 16901801 16901861 -225762492 + (GA)n Simple_repeat Simple_repeat 1 60 0 1636 122 0 24 chr1 16902034 16902197 -225762156 - AluSx SINE Alu -14 298 141 249 33 0 0 chr1 16902197 16902227 -225762126 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1636 122 0 24 chr1 16902227 16902309 -225762044 - AluSx SINE Alu -171 141 59 434 227 80 13 chr1 16902795 16902945 -225761408 - REP3 LTR ERV -401 161 2 1543 0 0 0 chr1 16903451 16903615 -225760738 - U1 snRNA snRNA -1 164 1 285 319 51 14 chr1 16903999 16904137 -225760216 - Charlie4 DNA MER1_type -4 1957 1815 2857 131 37 4 chr1 16904717 16905199 -225759154 + MER41E LTR ERV1 15 512 0 331 350 83 0 chr1 16905314 16905471 -225758882 + HAL1 LINE L1 527 696 -1811 2554 142 49 46 chr1 16905487 16906057 -225758296 - LTR8A LTR ERV1 0 727 156 849 170 16 27 chr1 16906069 16906257 -225758096 - MER1B DNA MER1_type -2 337 152 1714 310 67 26 chr1 16907136 16908049 -225756304 - PRIMA41-int LTR ERV1 -2057 5699 4750 2564 102 8 0 chr1 16908174 16908526 -225755827 - THE1A LTR MaLR 0 355 1 522 307 118 31 chr1 16908610 16909118 -225755235 + L1M4 LINE L1 4696 5247 -899 1904 57 53 50 chr1 16910310 16910634 -225753719 + AluY SINE Alu 1 325 0 459 299 141 25 chr1 16910962 16911101 -225753252 + L1M4 LINE L1 4987 5108 -1038 2778 13 0 0 chr1 16911101 16911412 -225752941 + AluYb8 SINE Alu 1 311 -7 459 299 141 25 chr1 16911412 16911446 -225752907 + L1M4 LINE L1 5108 5137 -1009 4990 172 30 16 chr1 16911446 16912352 -225752001 + MER49 LTR ERV1 5 923 0 459 299 141 25 chr1 16912352 16912418 -225751935 + L1M4 LINE L1 5137 5255 -891 4998 39 0 0 chr1 16912419 16913090 -225751263 + L1P LINE L1 4293 4963 -1183 559 182 0 0 chr1 16913096 16913208 -225751145 + AluSg/x SINE Alu 193 304 0 310 232 0 0 chr1 16913645 16913714 -225750639 - tRNA-His-CAC tRNA tRNA -3 72 4 2087 112 10 22 chr1 16913967 16914281 -225750072 - AluSx SINE Alu -2 310 1 627 42 0 0 chr1 16914945 16915017 -225749336 - tRNA-Gly-GGG tRNA tRNA -2 72 1 234 81 0 0 chr1 16916639 16916676 -225747677 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 504 153 0 0 chr1 16916682 16916754 -225747599 - tRNA-Val-GTG tRNA tRNA -4 72 1 2002 104 4 14 chr1 16918079 16918359 -225745994 + AluSg SINE Alu 1 277 -33 180 0 0 0 chr1 16918361 16918381 -225745972 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 381 301 45 40 chr1 16919054 16919230 -225745123 - MIR SINE MIR -36 226 50 497 285 180 10 chr1 16919505 16919705 -225744648 - MIR SINE MIR -26 236 3 203 189 0 0 chr1 16919729 16919766 -225744587 + T-rich Low_complexity Low_complexity 1 37 0 212 0 0 35 chr1 16921138 16921167 -225743186 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr1 16921380 16921402 -225742951 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 16922024 16922044 -225742309 + (T)n Simple_repeat Simple_repeat 1 20 0 342 0 0 0 chr1 16923088 16923126 -225741227 + (TTA)n Simple_repeat Simple_repeat 1 38 0 554 195 57 0 chr1 16923809 16923932 -225740421 - MER3 DNA MER1_type 0 209 80 243 269 46 56 chr1 16924345 16924453 -225739900 + L2 LINE L2 3159 3265 -7 1425 143 6 146 chr1 16925697 16925890 -225738463 - AluJb SINE Alu 0 327 109 2367 80 0 0 chr1 16925890 16926189 -225738164 - AluSx SINE Alu -13 299 1 1425 143 6 146 chr1 16926189 16926200 -225738153 - AluJb SINE Alu -218 109 98 2147 118 0 7 chr1 16926200 16926497 -225737856 - AluSx SINE Alu -17 295 1 1425 143 6 146 chr1 16926497 16926531 -225737822 - AluJb SINE Alu -229 98 61 2306 97 0 0 chr1 16926531 16926831 -225737522 + AluSq SINE Alu 1 300 -13 2017 118 17 0 chr1 16926831 16927127 -225737226 + AluSq SINE Alu 1 301 -12 1425 143 6 146 chr1 16927127 16927258 -225737095 - AluJb SINE Alu -264 63 1 850 179 39 5 chr1 16927259 16927466 -225736887 + Charlie5 DNA MER1_type 2372 2585 -27 206 79 0 26 chr1 16929120 16929158 -225735195 + (CGGG)n Simple_repeat Simple_repeat 3 39 0 226 279 88 44 chr1 16931664 16931800 -225732553 + L2 LINE L2 2965 3106 -166 200 217 11 130 chr1 16931937 16931995 -225732358 + L2 LINE L2 3191 3236 -36 2308 100 0 3 chr1 16931995 16932305 -225732048 + AluSx SINE Alu 1 309 -3 200 217 11 130 chr1 16932305 16932338 -225732015 + L2 LINE L2 3236 3271 -1 211 309 108 36 chr1 16932354 16932493 -225731860 - MIR3 SINE MIR -47 161 13 * 438 181 21 32 chr1 16932491 16932585 -225731768 + MER5A DNA MER1_type 14 106 -83 1648 95 0 13 chr1 16932769 16933000 -225731353 + AluSg/x SINE Alu 85 312 0 201 250 0 83 chr1 16934749 16934869 -225729484 + G-rich Low_complexity Low_complexity 5 114 0 207 219 47 0 chr1 16935806 16935870 -225728483 - MIR SINE MIR -87 121 55 222 37 0 0 chr1 16936202 16936229 -225728124 + (CGG)n Simple_repeat Simple_repeat 2 28 0 214 232 49 0 chr1 16936446 16936528 -225727825 + (CGGG)n Simple_repeat Simple_repeat 4 89 0 250 234 39 0 chr1 16939482 16939559 -225724794 + G-rich Low_complexity Low_complexity 5 84 0 278 316 13 19 chr1 16940190 16940345 -225724008 + (TG)n Simple_repeat Simple_repeat 2 155 0 223 233 128 12 chr1 16940878 16940964 -225723389 + MIR SINE MIR 45 140 -68 350 302 63 16 chr1 16941939 16942065 -225722288 + MIR SINE MIR 31 162 -100 2120 103 34 0 chr1 16942113 16942404 -225721949 - AluSq SINE Alu -12 301 1 2165 69 0 35 chr1 16942413 16942726 -225721627 - AluSc SINE Alu 0 303 1 208 368 23 0 chr1 16942761 16942848 -225721505 + MIR SINE MIR 173 261 -1 208 347 199 0 chr1 16942964 16943160 -225721193 - L3 LINE CR1 -63 1514 1280 236 400 103 0 chr1 16943494 16943669 -225720684 + MIR SINE MIR 5 197 -65 219 273 70 0 chr1 16943817 16943915 -225720438 + MIR SINE MIR 63 145 -63 22 35 0 0 chr1 16944187 16944216 -225720137 + GC_rich Low_complexity Low_complexity 1 29 0 248 198 10 59 chr1 16944458 16944559 -225719794 + (CCCCG)n Simple_repeat Simple_repeat 5 100 0 2357 60 17 3 chr1 16944989 16945289 -225719064 - AluSg SINE Alu -6 304 1 199 332 122 53 chr1 16945380 16945627 -225718726 + L2 LINE L2 2914 3177 -95 477 225 58 68 chr1 16945633 16945824 -225718529 - MER53 DNA DNA 0 189 1 2122 134 0 0 chr1 16945892 16946199 -225718154 - AluSx SINE Alu -5 307 1 186 231 115 0 chr1 16946350 16946402 -225717951 - MIR SINE MIR -137 125 68 180 243 0 0 chr1 16947711 16947748 -225716605 + MIR SINE MIR 218 254 -8 1740 169 0 3 chr1 16947999 16948294 -225716059 + AluJo SINE Alu 18 311 -1 22 56 0 0 chr1 16948319 16948355 -225715998 + AT_rich Low_complexity Low_complexity 1 36 0 684 324 89 0 chr1 16948358 16948583 -225715770 - MIR SINE MIR -1 261 17 207 286 146 56 chr1 16948750 16948928 -225715425 + MIR SINE MIR 51 244 -18 1915 122 21 11 chr1 16950544 16950831 -225713522 + AluSx SINE Alu 1 290 -22 300 246 185 20 chr1 16950851 16951046 -225713307 - L2 LINE L2 -200 3113 2887 1193 130 29 0 chr1 16951123 16951294 -225713059 - AluSg/x SINE Alu -18 292 119 2165 107 4 4 chr1 16951289 16951580 -225712773 - AluSg SINE Alu -29 281 1 2460 75 0 3 chr1 16951593 16951902 -225712451 - AluSg SINE Alu -3 307 2 204 246 0 62 chr1 16952695 16952760 -225711593 - MIR SINE MIR -86 122 62 521 236 36 0 chr1 16952793 16952903 -225711450 + L2 LINE L2 3155 3268 -4 188 267 33 0 chr1 16952904 16952964 -225711389 + MIR SINE MIR 130 191 -71 2293 86 3 68 chr1 16953006 16953382 -225710971 - AluSx SINE Alu 0 355 1 1345 80 5 37 chr1 16953909 16954096 -225710257 - AluSp SINE Alu -8 305 125 2427 82 0 22 chr1 16957862 16958180 -225706173 - AluY SINE Alu 0 311 1 1401 164 30 4 chr1 16960199 16960462 -225703891 + L1M2 LINE L1 5389 5658 -633 901 77 17 0 chr1 16961026 16961143 -225703210 - AluSg/x SINE Alu -26 284 166 459 206 0 0 chr1 16962241 16962314 -225702039 + tRNA-Val-GTG tRNA tRNA 1 73 -3 598 54 0 0 chr1 16963960 16964034 -225700319 + tRNA-Gly-GGG tRNA tRNA 1 74 0 2236 108 10 0 chr1 16964707 16965003 -225699350 + AluSx SINE Alu 1 299 -13 322 188 14 14 chr1 16965255 16965324 -225699029 + tRNA-His-CAC tRNA tRNA 4 72 -3 639 146 0 0 chr1 16965777 16965873 -225698480 - AluSg/x SINE Alu -22 288 193 645 231 94 49 chr1 16965887 16966194 -225698159 - L1ME2 LINE L1 -13 6151 5831 294 297 155 0 chr1 16966280 16966428 -225697925 - L1ME2 LINE L1 -531 5631 5461 735 120 0 0 chr1 16966431 16966531 -225697822 + AluSg/x SINE Alu 82 181 -131 557 169 0 0 chr1 16966526 16966615 -225697738 + AluJb SINE Alu 209 297 -15 * 443 205 73 58 chr1 16966615 16966820 -225697533 - L1ME2 LINE L1 -703 5471 5264 8753 47 8 2 chr1 16966843 16968692 -225695661 - L1PA4 LINE L1 -4 6151 4293 449 283 146 25 chr1 16968693 16968759 -225695594 - L1ME2 LINE L1 -891 5255 5198 4781 184 19 14 chr1 16968759 16969674 -225694679 - MER49 LTR ERV1 0 923 5 449 283 146 25 chr1 16969674 16969847 -225694506 - L1ME2 LINE L1 -948 5198 4987 1976 57 54 50 chr1 16970175 16970497 -225693856 - AluY SINE Alu 0 323 1 542 294 124 38 chr1 16971689 16972196 -225692157 - L1M4 LINE L1 -899 5247 4697 2557 99 8 0 chr1 16972281 16972633 -225691720 + THE1A LTR MaLR 1 355 0 1678 299 71 31 chr1 16972758 16973671 -225690682 + PRIMA41-int LTR ERV1 4750 5699 -2057 895 140 18 29 chr1 16974567 16974738 -225689615 + MER1B DNA MER1_type 169 337 -2 2701 140 49 46 chr1 16974750 16975320 -225689033 + LTR8A LTR ERV1 156 727 0 329 350 83 0 chr1 16975336 16975493 -225688860 - HAL1 LINE L1 -1811 696 527 2998 129 37 4 chr1 16975608 16976090 -225688263 - MER41E LTR ERV1 0 512 15 264 304 58 22 chr1 16976669 16976807 -225687546 + Charlie4 DNA MER1_type 1815 1957 -4 1544 0 0 0 chr1 16977191 16977355 -225686998 + U1 snRNA snRNA 1 164 -1 428 227 80 13 chr1 16977861 16978011 -225686342 + REP3 LTR ERV 2 161 -401 1683 122 0 24 chr1 16978497 16978579 -225685774 + AluSx SINE Alu 59 141 -171 249 33 0 0 chr1 16978579 16978609 -225685744 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1683 122 0 24 chr1 16978609 16978772 -225685581 + AluSx SINE Alu 141 298 -14 393 22 0 0 chr1 16978945 16978991 -225685362 + (TC)n Simple_repeat Simple_repeat 1 46 0 21 36 0 0 chr1 16980047 16980075 -225684278 + AT_rich Low_complexity Low_complexity 1 28 0 695 176 340 80 chr1 16980075 16980313 -225684040 + AluJo SINE Alu 2 301 -1 583 189 0 0 chr1 16980368 16980474 -225683879 + FLAM_A SINE Alu 18 123 -19 635 167 20 0 chr1 16980479 16980581 -225683772 + FRAM SINE Alu 40 143 -33 21 36 0 0 chr1 16980584 16980612 -225683741 + AT_rich Low_complexity Low_complexity 1 28 0 2161 135 0 0 chr1 16980622 16980926 -225683427 - AluSx SINE Alu -6 306 3 24 32 0 0 chr1 16981095 16981126 -225683227 + AT_rich Low_complexity Low_complexity 1 31 0 2050 136 4 0 chr1 16981150 16981461 -225682892 - AluSg SINE Alu 0 312 1 2065 108 54 14 chr1 16981530 16981826 -225682527 + AluSg SINE Alu 1 308 -2 2148 237 10 22 chr1 16981878 16982384 -225681969 + MER87 LTR ERV1 12 511 -30 481 143 119 0 chr1 16982385 16982469 -225681884 + AluSg/x SINE Alu 209 302 -8 1939 125 87 0 chr1 16983277 16983564 -225680789 + AluSx SINE Alu 1 312 0 813 196 14 0 chr1 16983706 16983876 -225680477 + AluJb SINE Alu 140 311 0 1442 198 134 71 chr1 16984466 16985002 -225679351 + LTR4 LTR ERV1 27 596 0 230 91 0 0 chr1 16985002 16985035 -225679318 + U1 snRNA snRNA 133 165 0 290 157 56 192 chr1 16985423 16985583 -225678770 - AluJb SINE Alu -96 206 88 261 57 0 0 chr1 16985876 16985911 -225678442 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2221 107 0 0 chr1 16985911 16986192 -225678161 - AluSx SINE Alu -31 281 1 269 252 98 49 chr1 16986409 16986532 -225677821 - L2 LINE L2 0 3272 3144 1889 109 26 8 chr1 16989877 16990144 -225674209 + AluSx SINE Alu 1 272 -40 513 88 0 0 chr1 16990144 16990212 -225674141 + Alu SINE Alu 227 294 -15 983 169 45 0 chr1 16990587 16990765 -225673588 + MER5A DNA MER1_type 3 188 -1 216 256 37 12 chr1 16991369 16991451 -225672902 + MIR3 SINE MIR 113 196 -12 376 349 77 13 chr1 16992233 16992468 -225671885 - MIR SINE MIR -12 250 1 211 293 0 0 chr1 16992786 16992844 -225671509 + (CTA)n Simple_repeat Simple_repeat 1 58 0 348 236 143 14 chr1 16992844 16992984 -225671369 - MIR SINE MIR -9 253 96 27 0 0 0 chr1 16993286 16993313 -225671040 + AT_rich Low_complexity Low_complexity 1 27 0 1085 212 82 0 chr1 16993579 16993848 -225670505 + Charlie1a DNA MER1_type 49 339 -1116 248 139 47 0 chr1 16998517 16998560 -225665793 - MLT1C LTR MaLR -323 144 100 724 298 109 42 chr1 16998689 16999510 -225664843 + L2 LINE L2 2216 3109 -163 613 255 148 5 chr1 16999533 16999729 -225664624 - MIR SINE MIR -3 259 36 195 42 0 0 chr1 16999810 16999834 -225664519 + (TGG)n Simple_repeat Simple_repeat 1 24 0 185 273 23 0 chr1 17000852 17000896 -225663457 + L2 LINE L2 3137 3181 -91 195 129 0 0 chr1 17002320 17002351 -225662002 + (GGA)n Simple_repeat Simple_repeat 3 33 0 431 265 176 10 chr1 17003225 17003429 -225660924 + Charlie5 DNA MER1_type 2348 2585 -27 1168 184 128 3 chr1 17004124 17004412 -225659941 + MER33 DNA MER1_type 1 324 0 477 333 52 0 chr1 17006888 17007023 -225657330 - MIR3 SINE MIR -39 169 28 447 281 88 26 chr1 17007304 17007496 -225656857 - MER63A DNA MER1_type -6 204 1 199 319 162 29 chr1 17007795 17008005 -225656348 + L2 LINE L2 2456 2693 -621 396 243 0 0 chr1 17008013 17008124 -225656229 + GA-rich Low_complexity Low_complexity 3 113 0 552 15 0 0 chr1 17008158 17008223 -225656130 + (CA)n Simple_repeat Simple_repeat 1 65 0 767 293 92 38 chr1 17008227 17008760 -225655593 + L2 LINE L2 2736 3306 -7 2381 88 0 3 chr1 17008760 17009056 -225655297 + AluSx SINE Alu 1 295 -17 1479 228 110 21 chr1 17009888 17010124 -225654229 - MLT1C LTR MaLR 0 467 253 195 42 0 0 chr1 17010124 17010148 -225654205 + (TCTCTG)n Simple_repeat Simple_repeat 6 29 0 1479 228 110 21 chr1 17010148 17010340 -225654013 - MLT1C LTR MaLR -214 253 1 2037 191 71 9 chr1 17010565 17011031 -225653322 + MLT1D LTR MaLR 4 498 -7 200 333 17 0 chr1 17011114 17011174 -225653179 + L2 LINE L2 3249 3309 -4 245 296 177 44 chr1 17011178 17011404 -225652949 - L2 LINE L2 -25 3288 3033 253 319 176 5 chr1 17012243 17012459 -225651894 - MIR SINE MIR -8 254 2 348 349 94 0 chr1 17014181 17014330 -225650023 - MIR SINE MIR -37 225 63 1710 265 137 44 chr1 17014339 17015149 -225649204 - L2 LINE L2 0 3313 2352 3040 106 7 2 chr1 17015149 17015575 -225648778 - MSTA LTR MaLR 0 428 1 1710 265 137 44 chr1 17015575 17015981 -225648372 - L2 LINE L2 -961 2352 1985 472 168 37 19 chr1 17016016 17016177 -225648176 + GA-rich Low_complexity Low_complexity 3 166 0 189 157 0 186 chr1 17016485 17016555 -225647798 + MIR SINE MIR 206 262 0 752 264 169 34 chr1 17017283 17017727 -225646626 + MLT1J LTR MaLR 7 510 -1 214 384 88 32 chr1 17017740 17017865 -225646488 + L2 LINE L2 3137 3268 -4 198 0 0 0 chr1 17018890 17018912 -225645441 + (CTTG)n Simple_repeat Simple_repeat 3 24 0 4553 217 63 44 chr1 17019251 17021621 -225642732 - L1MD2 LINE L1 -2 6357 3920 216 337 36 12 chr1 17021690 17021773 -225642580 - L2 LINE L2 -21 3292 3208 2279 74 0 11 chr1 17023482 17023792 -225640561 - AluY SINE Alu 0 307 1 369 276 69 18 chr1 17023903 17024064 -225640289 - MIR SINE MIR -47 215 42 241 216 0 0 chr1 17024668 17024719 -225639634 + LTR67 LTR ERVL 507 557 0 256 275 113 12 chr1 17024776 17024856 -225639497 + L2 LINE L2 3212 3299 -14 225 65 0 0 chr1 17025401 17025432 -225638921 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 492 296 13 20 chr1 17026188 17026353 -225638000 - MER5A DNA MER1_type -3 186 12 1586 110 196 8 chr1 17027072 17027327 -225637026 - AluSg1 SINE Alu -6 303 1 389 320 40 0 chr1 17027505 17027655 -225636698 - MIR SINE MIR -35 227 72 3211 246 68 33 chr1 17027671 17028122 -225636231 - L1ME3A LINE L1 -13 6157 5724 2514 114 78 24 chr1 17028122 17028533 -225635820 - Tigger2a DNA MER2_type -1 433 1 3211 246 68 33 chr1 17028533 17030178 -225634175 - L1ME3A LINE L1 -446 5724 3217 2141 103 23 7 chr1 17030178 17030479 -225633874 - AluSp SINE Alu -7 306 1 3211 246 68 33 chr1 17030479 17030851 -225633502 - L1ME3A LINE L1 -2953 3217 2860 774 100 0 54 chr1 17031176 17031306 -225633047 - FLAM_A SINE Alu 0 142 20 358 197 0 0 chr1 17032145 17032216 -225632137 + MER97b DNA MER1_type? 535 605 -448 429 269 45 64 chr1 17032597 17032861 -225631492 + MER97c DNA MER1_type? 812 1070 -20 312 263 97 9 chr1 17033131 17033245 -225631108 + MIR SINE MIR 38 161 -101 226 180 0 60 chr1 17033717 17033767 -225630586 - L2 LINE L2 -8 3264 3218 650 0 38 0 chr1 17035069 17035149 -225629204 + (TTTTC)n Simple_repeat Simple_repeat 3 85 0 253 91 0 0 chr1 17035149 17035182 -225629171 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 2041 136 9 19 chr1 17035182 17035498 -225628855 - AluSq SINE Alu 0 313 1 3763 114 28 12 chr1 17035538 17036144 -225628209 - MER39B LTR ERV1 -37 616 1 762 240 39 20 chr1 17036846 17037050 -225627303 - MIR SINE MIR -12 250 43 321 304 15 24 chr1 17038009 17038133 -225626220 - MIR SINE MIR -63 145 37 8467 39 5 1 chr1 17038552 17040271 -225624082 - L1PA4 LINE L1 -136 6019 4293 456 279 146 25 chr1 17040272 17040338 -225624015 - L1M4 LINE L1 -891 5255 5198 4720 188 19 14 chr1 17040338 17041253 -225623100 - MER49 LTR ERV1 0 923 5 456 279 146 25 chr1 17041253 17041426 -225622927 - L1M4 LINE L1 -948 5198 4987 1976 57 54 50 chr1 17041754 17042057 -225622296 - AluY SINE Alu 0 304 1 486 286 149 40 chr1 17043249 17043746 -225620607 - L1M4 LINE L1 -899 5247 4697 2533 102 8 0 chr1 17043831 17044183 -225620170 + THE1A LTR MaLR 1 355 0 1100 183 33 21 chr1 17044360 17044601 -225619752 + MLT1A1 LTR MaLR 122 365 0 311 185 0 98 chr1 17045567 17045659 -225618694 + MER20 DNA MER1_type 81 163 -56 387 287 30 24 chr1 17045740 17045904 -225618449 - L2 LINE L2 -799 2515 2351 604 54 0 0 chr1 17046397 17046471 -225617882 + tRNA-Glu-GAG tRNA tRNA 1 74 -1 594 197 73 0 chr1 17047527 17047664 -225616689 + U1 snRNA snRNA 5 151 -14 357 191 0 0 chr1 17048158 17048226 -225616127 - tRNA-His-CAC tRNA tRNA -2 73 6 2039 119 3 14 chr1 17048293 17048586 -225615767 - AluSx SINE Alu -22 290 1 604 54 0 0 chr1 17049275 17049349 -225615004 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 492 177 105 57 chr1 17049373 17049497 -225614856 + FLAM_C SINE Alu 2 131 -12 418 266 73 24 chr1 17049714 17049874 -225614479 - L1MEc LINE L1 -4356 2040 1889 1824 162 3 34 chr1 17049874 17050195 -225614158 - AluSx SINE Alu -1 311 1 418 266 73 24 chr1 17050195 17050311 -225614042 - L1MEc LINE L1 -4507 1889 1715 554 222 6 99 chr1 17250311 17250473 -225413880 - AluJo SINE Alu -115 197 51 2272 241 144 24 chr1 17250484 17251256 -225413097 + L2 LINE L2 1979 2890 -423 2187 107 39 39 chr1 17251256 17251620 -225412733 + THE1B LTR MaLR 1 364 0 2272 241 144 24 chr1 17251620 17251810 -225412543 + L2 LINE L2 2890 3056 -257 263 259 0 0 chr1 17251846 17251904 -225412449 - L1MC3 LINE L1 -506 7279 7222 1853 139 23 116 chr1 17251907 17252177 -225412176 + MLT1B LTR MaLR 1 218 -172 2148 113 29 45 chr1 17252177 17252558 -225411795 + THE1C LTR MaLR 1 375 0 1853 139 23 116 chr1 17252558 17252717 -225411636 + MLT1B LTR MaLR 218 390 0 383 232 82 57 chr1 17252778 17252972 -225411381 + L2 LINE L2 3114 3312 -1 698 310 48 59 chr1 17252982 17253094 -225411259 + L1M4 LINE L1 2135 2247 -3899 2295 97 7 7 chr1 17253094 17253383 -225410970 + AluSx SINE Alu 1 289 -23 426 69 0 0 chr1 17253384 17253442 -225410911 + (TA)n Simple_repeat Simple_repeat 1 58 0 698 310 48 59 chr1 17253442 17253685 -225410668 + L1M4 LINE L1 2246 2488 -3658 8998 206 76 35 chr1 17253685 17257235 -225407118 + L1MDa LINE L1 189 3888 -2652 3162 98 2 22 chr1 17257269 17257757 -225406596 - L1PB1 LINE L1 0 6151 5674 2429 149 19 3 chr1 17257762 17258406 -225405947 + L1PB1 LINE L1 5005 5658 -493 509 254 39 22 chr1 17258402 17258583 -225405770 + L1MDa LINE L1 3877 4060 -2480 * 759 294 87 25 chr1 17258577 17259185 -225405168 + L1M4 LINE L1 2473 3118 -3028 430 202 48 24 chr1 17259190 17259314 -225405039 + L1M4 LINE L1 3154 3280 -2866 1646 170 46 20 chr1 17259662 17260070 -225404283 - L1M4 LINE L1 -608 5576 5165 2280 88 0 0 chr1 17260070 17260376 -225403977 - AluY SINE Alu 0 306 1 1646 170 46 20 chr1 17260376 17260429 -225403924 - L1M4 LINE L1 -1019 5165 5115 504 221 115 8 chr1 17260642 17260764 -225403589 + MER63A DNA MER1_type 50 184 -26 301 275 22 0 chr1 17261139 17261230 -225403123 - MIR SINE MIR -82 126 34 258 308 106 40 chr1 17261551 17261778 -225402575 + MIR SINE MIR 7 248 -14 2071 108 0 0 chr1 17262035 17262295 -225402058 + AluSq SINE Alu 1 260 -53 216 0 0 0 chr1 17262342 17262366 -225401987 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 421 287 0 0 chr1 17262513 17262628 -225401725 + MIR3 SINE MIR 86 200 -8 294 220 68 0 chr1 17262948 17263049 -225401304 + MIR SINE MIR 31 149 -59 604 251 82 11 chr1 17264690 17264873 -225399480 + MER91A DNA MER1_type 1 196 0 1932 161 0 13 chr1 17265112 17265428 -225398925 + AluJb SINE Alu 1 312 0 2444 217 11 4 chr1 17265582 17266102 -225398251 - L1ME3 LINE L1 -24 6138 5615 1979 155 53 0 chr1 17266103 17266445 -225397908 - THE1C LTR MaLR -1 374 15 1198 208 26 55 chr1 17266447 17266740 -225397613 - L1ME3 LINE L1 -541 5621 5340 2018 159 0 10 chr1 17266740 17267041 -225397312 - AluSx SINE Alu -13 299 2 1198 208 26 55 chr1 17267041 17267126 -225397227 - L1ME3 LINE L1 -822 5340 5254 190 336 50 57 chr1 17267177 17267317 -225397036 - L2 LINE L2 0 3272 3134 1358 137 11 95 chr1 17268418 17268565 -225395788 + LTR51 LTR ERV1 5 163 -508 1992 107 54 18 chr1 17268565 17268845 -225395508 + AluSx SINE Alu 1 290 -22 2335 93 0 7 chr1 17268853 17269155 -225395198 + AluY SINE Alu 1 300 -11 1358 137 11 95 chr1 17269155 17269282 -225395071 + LTR51 LTR ERV1 170 264 -407 245 107 0 54 chr1 17269285 17269520 -225394833 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1991 154 6 6 chr1 17269520 17269832 -225394521 - AluJb SINE Alu 0 547 1 1763 191 21 67 chr1 17269833 17270267 -225394086 + LTR51 LTR ERV1 258 671 0 352 270 17 9 chr1 17271511 17271626 -225392727 + MIR SINE MIR 24 139 -69 265 284 0 12 chr1 17271652 17271733 -225392620 + MIR SINE MIR 85 164 -98 428 262 5 48 chr1 17271959 17272146 -225392207 + CT-rich Low_complexity Low_complexity 2 180 0 205 185 62 31 chr1 17272129 17272194 -225392159 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 * 188 195 0 0 chr1 17272990 17273031 -225391322 + MIR SINE MIR 81 121 -87 597 328 39 19 chr1 17273697 17273953 -225390400 + MIR SINE MIR 2 262 0 200 269 0 0 chr1 17274100 17274152 -225390201 + L2 LINE L2 3262 3313 0 406 300 95 24 chr1 17275470 17275549 -225388804 - MIR SINE MIR -10 252 180 2098 140 0 0 chr1 17275549 17275859 -225388494 + AluSx SINE Alu 1 310 0 406 300 95 24 chr1 17275859 17275987 -225388366 - MIR SINE MIR -82 180 28 195 265 159 62 chr1 17276000 17276358 -225387995 - L2 LINE L2 -558 2756 2364 232 286 18 0 chr1 17276861 17276917 -225387436 + L2 LINE L2 3256 3312 -1 * 413 297 39 13 chr1 17276914 17277069 -225387284 + MIR3 SINE MIR 43 201 -7 1112 215 31 78 chr1 17277755 17278045 -225386308 - PABL_B LTR ERV1 0 667 365 1877 177 3 0 chr1 17278045 17278344 -225386009 - AluSx SINE Alu -11 301 2 1112 215 31 78 chr1 17278344 17278534 -225385819 - PABL_B LTR ERV1 -302 365 53 678 262 126 15 chr1 17278815 17279086 -225385267 + L2 LINE L2 3004 3304 -9 350 313 27 0 chr1 17279710 17279822 -225384531 + MIR SINE MIR 33 147 -115 261 292 28 0 chr1 17279833 17279905 -225384448 + CT-rich Low_complexity Low_complexity 1 74 0 539 207 0 0 chr1 17279913 17280029 -225384324 - AluSg/x SINE Alu -12 298 183 1798 115 0 8 chr1 17280129 17280372 -225383981 - AluY SINE Alu -70 241 1 1946 108 4 22 chr1 17280691 17280863 -225383490 - AluSx SINE Alu -9 303 136 2357 93 0 3 chr1 17280863 17281154 -225383199 - AluSc SINE Alu -19 290 1 1946 108 4 22 chr1 17281154 17281258 -225383095 - AluSx SINE Alu -176 136 32 364 247 164 41 chr1 17281264 17281410 -225382943 + MER5B DNA MER1_type 15 178 0 509 315 28 0 chr1 17281434 17281615 -225382738 + MIR SINE MIR 45 230 -32 454 275 18 54 chr1 17282107 17282274 -225382079 - MIR SINE MIR 0 262 102 1461 209 63 50 chr1 17282794 17283192 -225381161 + MLT1D LTR MaLR 1 403 -102 * 2212 151 41 44 chr1 17283188 17283472 -225380881 + LTR32 LTR ERVL 10 294 -177 2335 95 0 0 chr1 17283472 17283766 -225380587 - AluSg SINE Alu -16 294 1 2212 151 41 44 chr1 17283766 17283917 -225380436 + LTR32 LTR ERVL 294 444 -27 1108 154 0 0 chr1 17283919 17284075 -225380278 - FRAM SINE Alu -22 154 1 642 176 0 8 chr1 17284093 17284212 -225380141 + MLT1D LTR MaLR 388 505 0 227 337 0 0 chr1 17287040 17287123 -225377230 + GA-rich Low_complexity Low_complexity 1 83 0 458 235 112 18 chr1 17287486 17287656 -225376697 + MER5A DNA MER1_type 1 186 -3 2379 91 3 25 chr1 17287656 17287975 -225376378 + AluSx SINE Alu 1 312 0 212 245 19 0 chr1 17287999 17288052 -225376301 + L2 LINE L2 3005 3058 -214 679 224 45 30 chr1 17289645 17289846 -225374507 - MIR SINE MIR -13 249 46 281 317 41 3 chr1 17289941 17290146 -225374207 + MIR SINE MIR 38 252 -10 1935 159 24 3 chr1 17290882 17291177 -225373176 + AluJb SINE Alu 1 301 -11 2197 262 128 22 chr1 17291182 17291915 -225372438 - MER45C DNA AcHobo -678 903 75 2548 60 3 3 chr1 17291915 17292217 -225372136 + AluSp SINE Alu 1 302 -11 2197 262 128 22 chr1 17292217 17292293 -225372060 - MER45C DNA AcHobo -1506 75 8 2307 113 0 6 chr1 17293046 17293357 -225370996 - AluSx SINE Alu -3 309 1 2474 78 3 3 chr1 17293942 17294249 -225370104 - AluY SINE Alu 0 311 5 391 229 229 0 chr1 17294304 17294426 -225369927 + MIR3 SINE MIR 37 186 -22 436 261 121 24 chr1 17295469 17295634 -225368719 - MIR SINE MIR -80 182 2 992 138 32 27 chr1 17295647 17295835 -225368518 + MER53 DNA DNA 1 189 0 473 278 15 0 chr1 17296471 17296604 -225367749 - MIR SINE MIR -36 226 92 1907 126 39 3 chr1 17296606 17296892 -225367461 + AluJo SINE Alu 3 298 -14 27 0 0 0 chr1 17296895 17296922 -225367431 + AT_rich Low_complexity Low_complexity 1 27 0 256 255 10 59 chr1 17296922 17297024 -225367329 - MIR SINE MIR -150 112 16 216 298 19 58 chr1 17297387 17297491 -225366862 + L2 LINE L2 3000 3099 -173 1206 145 77 14 chr1 17297544 17297751 -225366602 - AluJb SINE Alu -6 306 87 348 239 14 6 chr1 17297801 17297936 -225366417 - MER20 DNA MER1_type 0 219 1 215 217 98 43 chr1 17297948 17298040 -225366313 + L2 LINE L2 3168 3264 -8 189 190 0 103 chr1 17298543 17298601 -225365752 + MIR SINE MIR 19 70 -138 1340 170 0 18 chr1 17298734 17298963 -225365390 - AluJb SINE Alu -9 303 79 1875 150 3 6 chr1 17299490 17299803 -225364550 + AluSx SINE Alu 1 312 0 228 234 0 62 chr1 17299869 17299933 -225364420 - L2 LINE L2 0 3313 3254 305 335 76 0 chr1 17299963 17300148 -225364205 + L1MC4a LINE L1 5705 5903 -1905 1831 144 3 7 chr1 17300225 17300523 -225363830 + AluJb SINE Alu 1 297 -15 779 141 127 1 chr1 17300525 17300684 -225363669 + L1MB5 LINE L1 5821 5979 -195 1802 102 72 8 chr1 17300934 17301247 -225363106 - AluJb SINE Alu 0 330 1 564 128 0 0 chr1 17301249 17301335 -225363018 - AluS SINE Alu -2 308 223 1689 124 39 16 chr1 17301335 17301465 -225362888 - AluSx SINE Alu -49 263 138 1831 107 68 7 chr1 17301465 17301745 -225362608 - AluY SINE Alu -14 297 1 1689 124 39 16 chr1 17301745 17301871 -225362482 - AluSx SINE Alu -174 138 1 248 338 75 23 chr1 17302047 17302180 -225362173 + MIR SINE MIR 4 143 -119 244 239 0 0 chr1 17302884 17302930 -225361423 - MER91 DNA MER1_type -149 47 2 342 303 264 0 chr1 17303368 17303523 -225360830 - MER91A DNA MER1_type 0 196 1 191 341 12 0 chr1 17303827 17303909 -225360444 - MIR SINE MIR -115 147 65 207 349 0 0 chr1 17305216 17305279 -225359074 + MIR SINE MIR 90 152 -110 205 300 50 0 chr1 17305427 17305507 -225358846 - MIR SINE MIR -173 89 6 1051 244 123 27 chr1 17306473 17307022 -225357331 + L2 LINE L2 2528 3115 -198 846 116 0 0 chr1 17307024 17307145 -225357208 - AluSg/x SINE Alu -9 301 181 694 183 7 44 chr1 17307163 17307300 -225357053 + L2 LINE L2 3182 3313 0 548 179 11 0 chr1 17307939 17308034 -225356319 + L2 LINE L2 3215 3310 -3 1367 300 220 24 chr1 17308363 17310102 -225354251 + L2 LINE L2 28 2107 -1207 2928 194 75 90 chr1 17310114 17311021 -225353332 + MER63C DNA MER1_type 3 895 -35 1751 197 35 24 chr1 17311021 17311392 -225352961 + ERVL LTR ERVL 1847 2221 -3543 318 108 40 27 chr1 17311434 17311508 -225352845 + C-rich Low_complexity Low_complexity 3 77 0 2235 104 3 0 chr1 17311618 17311926 -225352427 - AluSx SINE Alu -3 309 1 819 259 106 53 chr1 17311926 17312324 -225352029 + L2 LINE L2 2320 2738 -576 189 357 0 0 chr1 17312704 17312774 -225351579 + L2 LINE L2 3185 3254 -18 254 362 9 0 chr1 17312781 17312886 -225351467 - MIR SINE MIR -129 133 28 360 0 0 0 chr1 17313096 17313136 -225351217 + (ATG)n Simple_repeat Simple_repeat 3 42 0 180 262 0 0 chr1 17314191 17314233 -225350120 + L2 LINE L2 3002 3043 -229 241 283 87 11 chr1 17314272 17314364 -225349989 + MIR SINE MIR 99 197 -65 229 326 22 0 chr1 17314792 17314881 -225349472 - MIR SINE MIR -3 259 169 2030 156 43 54 chr1 17314926 17315349 -225349004 - MER83 LTR ERV1 -27 421 4 297 189 68 27 chr1 17315351 17315425 -225348928 - MIR SINE MIR -112 150 74 321 319 49 14 chr1 17315790 17315934 -225348419 - L3 LINE CR1 -101 1476 1328 208 392 59 0 chr1 17316512 17316614 -225347739 - L2 LINE L2 -10 3262 3155 267 280 131 54 chr1 17316629 17316797 -225347556 - MIR SINE MIR -56 206 26 812 248 39 5 chr1 17316866 17317072 -225347281 + MIR SINE MIR 10 222 -40 1568 104 207 4 chr1 17317076 17317327 -225347026 + AluSx SINE Alu 1 302 0 975 158 6 12 chr1 17318203 17318395 -225345958 + AluJo SINE Alu 122 312 0 1766 144 50 13 chr1 17318401 17318699 -225345654 + AluSx SINE Alu 1 309 -3 258 184 42 0 chr1 17318756 17318829 -225345524 - MIR SINE MIR -78 130 54 264 214 51 41 chr1 17321122 17321220 -225343133 - MIR SINE MIR -52 210 112 402 196 82 0 chr1 17321339 17321436 -225342917 - MIR SINE MIR -72 136 32 721 139 88 119 chr1 17321587 17321634 -225342719 - MER53 DNA DNA -1 188 141 2115 111 20 0 chr1 17321634 17321940 -225342413 + AluSx SINE Alu 1 312 0 721 139 88 119 chr1 17321940 17322086 -225342267 - MER53 DNA DNA -48 141 1 287 274 0 53 chr1 17322490 17322585 -225341768 - MIR3 SINE MIR -5 203 114 245 227 0 13 chr1 17322671 17322746 -225341607 + (CAT)n Simple_repeat Simple_repeat 3 76 0 531 279 56 17 chr1 17323808 17323987 -225340366 + MIR SINE MIR 63 248 -14 217 272 247 10 chr1 17323998 17324099 -225340254 - MIR SINE MIR -62 146 37 538 320 0 22 chr1 17324325 17324506 -225339847 - L2 LINE L2 0 3313 3137 1056 276 35 0 chr1 17324511 17324830 -225339523 - L2 LINE L2 -688 2626 2297 222 37 0 0 chr1 17325024 17325051 -225339302 + (GA)n Simple_repeat Simple_repeat 2 28 0 531 132 0 0 chr1 17325491 17325582 -225338771 + (TGGA)n Simple_repeat Simple_repeat 4 94 0 315 146 0 0 chr1 17325644 17325699 -225338654 + (ATG)n Simple_repeat Simple_repeat 1 55 0 335 281 42 0 chr1 17325701 17325797 -225338556 - MIR SINE MIR -10 252 153 2146 115 3 0 chr1 17325916 17326212 -225338141 + AluSg SINE Alu 1 297 -13 2107 125 0 0 chr1 17326292 17326597 -225337756 + AluY SINE Alu 1 305 -6 409 286 226 18 chr1 17326647 17326864 -225337489 + L1MC5 LINE L1 7651 7912 -49 186 308 51 43 chr1 17327521 17327638 -225336715 + MIR SINE MIR 16 133 -75 271 233 233 0 chr1 17327874 17327990 -225336363 + MIR SINE MIR 112 254 -8 210 257 194 7 chr1 17328679 17328823 -225335530 + L2 LINE L2 2921 3091 -181 1104 222 68 0 chr1 17328901 17329108 -225335245 + MER58A DNA MER1_type 4 224 0 195 241 0 56 chr1 17329625 17329679 -225334674 + L2 LINE L2 3010 3060 -212 234 310 0 14 chr1 17329790 17329861 -225334492 + MIR SINE MIR 23 92 -170 1903 134 20 17 chr1 17330071 17330370 -225333983 - AluJb SINE Alu -12 300 1 304 311 41 0 chr1 17330409 17330531 -225333822 + L1ME3A LINE L1 5836 5962 -208 264 245 11 64 chr1 17330586 17330680 -225333673 + L1ME3A LINE L1 5969 6057 -113 234 0 0 0 chr1 17330735 17330761 -225333592 + (TG)n Simple_repeat Simple_repeat 2 27 0 569 295 128 16 chr1 17330868 17331119 -225333234 + L1MC/D LINE L1 5388 5666 -2142 816 252 80 37 chr1 17331217 17331879 -225332474 - L1M4 LINE L1 -748 5398 4766 2045 108 4 0 chr1 17331879 17332156 -225332197 + AluSp SINE Alu 1 278 -35 207 0 0 0 chr1 17332159 17332182 -225332171 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 816 252 80 37 chr1 17332182 17332223 -225332130 - L1M4 LINE L1 -1381 4765 4578 * 1169 223 16 44 chr1 17332220 17332584 -225331769 - L1MCa LINE L1 -5182 1244 891 454 318 47 7 chr1 17333154 17333302 -225331051 + MIR3 SINE MIR 40 193 -15 462 260 90 67 chr1 17333310 17333533 -225330820 + MIR SINE MIR 35 262 0 811 276 29 34 chr1 17333568 17333807 -225330546 + MIR SINE MIR 15 252 -10 249 309 49 12 chr1 17334304 17334385 -225329968 + MIR SINE MIR 62 145 -63 417 251 131 50 chr1 17334446 17334645 -225329708 + MIR SINE MIR 34 248 -14 217 200 60 0 chr1 17334933 17334983 -225329370 - MIR3 SINE MIR -41 167 115 513 235 38 49 chr1 17335061 17335244 -225329109 - MIR SINE MIR -80 182 2 187 345 0 0 chr1 17335571 17335629 -225328724 + L2 LINE L2 3007 3064 -208 1939 98 0 88 chr1 17335694 17336022 -225328331 + AluSx SINE Alu 1 299 -13 335 301 179 0 chr1 17336322 17336518 -225327835 - MIR SINE MIR -18 244 14 642 199 243 24 chr1 17336906 17337112 -225327241 - MIR SINE MIR 0 262 12 408 281 72 0 chr1 17337183 17337322 -225327031 - MIR SINE MIR -37 225 77 923 191 38 6 chr1 17337558 17337741 -225326612 + MER53 DNA DNA 1 189 0 213 324 0 0 chr1 17337830 17337941 -225326412 + GA-rich Low_complexity Low_complexity 2 112 0 2201 99 16 0 chr1 17338033 17338337 -225326016 - AluSx SINE Alu -3 309 1 191 172 109 47 chr1 17338512 17338576 -225325777 - L2 LINE L2 -35 3237 3170 349 328 21 52 chr1 17338682 17338874 -225325479 + MIR SINE MIR 33 218 -44 451 314 21 0 chr1 17339147 17339287 -225325066 + MIR SINE MIR 7 149 -113 282 93 93 0 chr1 17339343 17339397 -225324956 - MIR SINE MIR -61 147 89 423 261 27 0 chr1 17339808 17339919 -225324434 + MER81 DNA DNA 1 114 0 185 297 176 0 chr1 17339962 17340036 -225324317 + MER5A DNA MER1_type 101 187 -2 2261 77 7 0 chr1 17340076 17340374 -225323979 + AluSp SINE Alu 1 300 -13 556 217 26 0 chr1 17340516 17340631 -225323722 - MIR SINE MIR -111 151 34 407 295 16 0 chr1 17341188 17341310 -225323043 - MIR3 SINE MIR -49 159 36 535 291 41 6 chr1 17341368 17341540 -225322813 + MER5B DNA MER1_type 1 178 0 535 250 9 0 chr1 17342245 17342357 -225321996 + MIR SINE MIR 37 149 -59 1808 145 0 3 chr1 17342639 17342921 -225321432 + AluJb SINE Alu 1 281 -31 221 277 60 12 chr1 17343340 17343423 -225320930 + L2 LINE L2 2988 3074 -198 781 240 68 18 chr1 17343652 17343873 -225320480 + MIR SINE MIR 31 262 0 447 241 9 0 chr1 17343864 17343972 -225320381 - MIR SINE MIR -103 159 51 * 364 348 30 7 chr1 17344030 17344165 -225320188 - L3 LINE CR1 -6 1571 1434 930 178 69 25 chr1 17344895 17345097 -225319256 + MER20 DNA MER1_type 6 216 -3 828 200 19 117 chr1 17345416 17345681 -225318672 + MIR SINE MIR 3 241 -21 206 262 85 106 chr1 17346609 17346694 -225317659 + MER5A DNA MER1_type 50 132 -57 2479 68 6 0 chr1 17346694 17347005 -225317348 - AluSp SINE Alu 0 313 1 206 262 85 106 chr1 17347005 17347060 -225317293 + MER5A DNA MER1_type 132 187 -2 412 229 33 66 chr1 17347076 17347147 -225317206 + MIR SINE MIR 26 93 -169 2418 73 0 0 chr1 17347147 17347449 -225316904 - AluY SINE Alu -9 302 1 412 229 33 66 chr1 17347449 17347499 -225316854 + MIR SINE MIR 93 143 -119 368 291 15 37 chr1 17347724 17347858 -225316495 + MIR SINE MIR 20 150 -112 1852 158 0 11 chr1 17348609 17348927 -225315426 + AluJo SINE Alu 1 315 0 454 243 29 73 chr1 17351680 17351816 -225312537 - MER91B DNA MER1_type -60 130 1 284 365 56 9 chr1 17351888 17351995 -225312358 - MIR SINE MIR -135 127 16 530 289 18 18 chr1 17352568 17352734 -225311619 + MIR3 SINE MIR 36 201 -7 837 218 96 5 chr1 17352893 17353081 -225311272 - MER3 DNA MER1_type -4 205 1 868 199 147 11 chr1 17353091 17353282 -225311071 + MER20 DNA MER1_type 3 219 0 224 133 0 158 chr1 17353475 17353671 -225310682 + (CATTC)n Simple_repeat Simple_repeat 2 166 0 488 190 219 0 chr1 17354168 17354305 -225310048 - MER20 DNA MER1_type -52 167 1 578 323 124 9 chr1 17354623 17354849 -225309504 - MIR SINE MIR -10 252 1 225 374 43 17 chr1 17355204 17355319 -225309034 + L2 LINE L2 3092 3209 -63 515 286 104 0 chr1 17355755 17355947 -225308406 - MIR SINE MIR -4 258 47 371 246 1 0 chr1 17356141 17356232 -225308121 + MIR SINE MIR 59 149 -68 322 353 16 27 chr1 17356685 17356872 -225307481 + L2 LINE L2 2839 3023 -249 2079 93 29 4 chr1 17356872 17357176 -225307177 + AluSx SINE Alu 1 311 0 846 224 82 18 chr1 17357313 17357532 -225306821 + MIR SINE MIR 30 262 0 250 348 62 9 chr1 17358079 17358191 -225306162 - MIR SINE MIR -18 244 127 446 292 41 0 chr1 17358205 17358376 -225305977 + L2 LINE L2 2828 3005 -308 1650 173 26 26 chr1 17358376 17358741 -225305612 - AluJb SINE Alu 0 365 1 574 248 110 0 chr1 17358799 17358944 -225305409 - MIR SINE MIR -7 255 95 195 322 103 0 chr1 17359135 17359222 -225305131 + MIR SINE MIR 42 137 -71 217 330 0 19 chr1 17359540 17359646 -225304707 + SUBTEL_sa Satellite Satellite 5 108 -66 222 37 0 0 chr1 17359905 17359932 -225304421 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 385 165 0 18 chr1 17360046 17360155 -225304198 + CT-rich Low_complexity Low_complexity 1 107 0 1731 167 0 0 chr1 17360156 17360432 -225303921 - AluSx SINE Alu 0 312 37 313 311 89 37 chr1 17360514 17360649 -225303704 + L2 LINE L2 3172 3313 0 564 294 6 19 chr1 17360661 17360821 -225303532 + MIR SINE MIR 95 252 -10 246 284 15 0 chr1 17360948 17361015 -225303338 - MIR SINE MIR -103 159 92 331 143 156 0 chr1 17361026 17361103 -225303250 + L2 LINE L2 3225 3313 0 236 157 0 171 chr1 17361073 17361143 -225303210 - L2 LINE L2 -7 3306 3249 * 392 318 0 19 chr1 17361126 17361233 -225303120 - MIR SINE MIR -138 124 20 291 241 0 35 chr1 17362008 17362095 -225302258 - Charlie8 DNA MER1_type -2257 160 77 570 252 12 60 chr1 17362650 17362900 -225301453 + L1M4 LINE L1 2790 3027 -3119 884 179 6 0 chr1 17362902 17363058 -225301295 + FRAM SINE Alu 1 156 -20 2139 95 0 29 chr1 17363061 17363367 -225300986 + AluSg SINE Alu 1 297 -13 653 155 57 17 chr1 17363395 17363662 -225300691 + L1PA5 LINE L1 3001 6152 -3 765 317 17 4 chr1 17363914 17364144 -225300209 + MIR SINE MIR 3 235 -27 259 186 0 0 chr1 17364186 17364229 -225300124 + L2 LINE L2 3257 3299 -14 360 286 86 64 chr1 17365296 17365516 -225298837 - L2 LINE L2 -38 3234 3010 200 194 0 0 chr1 17366066 17366102 -225298251 + (CAGGG)n Simple_repeat Simple_repeat 1 36 0 463 309 67 11 chr1 17366763 17366941 -225297412 + MIR SINE MIR 31 218 -44 320 188 174 0 chr1 17366941 17367010 -225297343 + L1M4 LINE L1 5726 5806 -368 1794 177 7 0 chr1 17367146 17367445 -225296908 - AluJb SINE Alu -11 301 1 359 286 30 126 chr1 17367454 17367685 -225296668 - L1ME LINE L1 -374 5788 5580 697 253 38 105 chr1 17367714 17368106 -225296247 - MLT1J1 LTR MaLR -18 428 63 792 284 27 18 chr1 17368765 17368987 -225295366 + MIR SINE MIR 5 228 -34 2116 114 0 3 chr1 17369188 17369487 -225294866 + AluSc SINE Alu 3 300 -9 268 192 131 30 chr1 17419642 17419741 -225244612 + MLT1K LTR MaLR 458 566 -22 2206 149 25 27 chr1 17419763 17419915 -225244438 + MSTA LTR MaLR 27 178 -250 2378 117 0 0 chr1 17419915 17420224 -225244129 - AluSc SINE Alu 0 309 1 2206 149 25 27 chr1 17420224 17420474 -225243879 + MSTA LTR MaLR 178 428 0 2198 105 72 43 chr1 17420558 17421066 -225243287 - MER51A LTR ERV1 0 634 1 428 274 29 49 chr1 17421086 17421290 -225243063 + LTR4 LTR ERV1 1 200 -396 917 239 18 21 chr1 17421479 17421759 -225242594 + LTR4 LTR ERV1 318 596 0 244 333 76 9 chr1 17422255 17422360 -225241993 + MIR SINE MIR 2 113 -149 1713 191 60 30 chr1 17422360 17422790 -225241563 + MLT1D LTR MaLR 1 443 -62 934 209 120 76 chr1 17422795 17423228 -225241125 - LTR56 LTR ERV1 0 445 11 1684 147 18 42 chr1 17423228 17423514 -225240839 + AluJo SINE Alu 1 279 -33 2457 127 91 8 chr1 17423514 17423908 -225240445 - MSTA LTR MaLR -1 427 1 7829 160 124 2 chr1 17423913 17425377 -225238976 - MLT1J1-int LTR MaLR -6 1635 5 1398 176 111 67 chr1 17425377 17425808 -225238545 + LTR7 LTR ERV1 1 450 0 2866 106 7 58 chr1 17425817 17426268 -225238085 - MSTA LTR MaLR 0 428 1 2259 108 0 22 chr1 17426317 17426631 -225237722 + AluY SINE Alu 1 307 -4 282 179 45 0 chr1 17426644 17426711 -225237642 + MLT1D LTR MaLR 436 505 0 609 63 13 0 chr1 17426940 17427019 -225237334 + MADE1 DNA Mariner 1 80 0 216 312 39 0 chr1 17427228 17427305 -225237048 + MIR SINE MIR 67 146 -116 280 252 58 24 chr1 17427417 17427527 -225236826 - MIR SINE MIR -75 133 25 268 264 27 55 chr1 17427950 17428060 -225236293 - MIR3 SINE MIR -24 184 78 186 203 153 17 chr1 17428153 17428212 -225236141 + L2 LINE L2 3206 3272 0 562 232 119 30 chr1 17428468 17428636 -225235717 - MIR SINE MIR -38 224 42 351 0 0 0 chr1 17428642 17428681 -225235672 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 254 286 78 13 chr1 17429007 17429084 -225235269 - L2 LINE L2 -4 3309 3228 243 311 0 0 chr1 17429191 17429265 -225235088 - MER117 DNA MER1_type -38 159 86 1517 165 4 0 chr1 17429279 17429515 -225234838 + AluJo SINE Alu 57 293 -19 532 273 68 117 chr1 17429981 17430366 -225233987 + L2 LINE L2 2897 3262 -10 2181 94 38 0 chr1 17430761 17431049 -225233304 + AluSc SINE Alu 11 309 0 1054 291 93 29 chr1 17431187 17432065 -225232288 - L2 LINE L2 -8 3305 2366 596 237 16 79 chr1 17432130 17432283 -225232070 - MER20 DNA MER1_type 0 219 58 189 0 0 0 chr1 17432283 17432304 -225232049 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 267 31 0 0 chr1 17432303 17432335 -225232018 + (GA)n Simple_repeat Simple_repeat 2 33 0 596 237 16 79 chr1 17432304 17432403 -225231950 - MER20 DNA MER1_type -161 58 1 544 220 34 0 chr1 17432403 17432521 -225231832 - MIR SINE MIR -55 207 86 354 300 33 67 chr1 17432514 17432568 -225231785 - L2 LINE L2 -946 2368 2314 * 1380 204 126 30 chr1 17432568 17432901 -225231452 + MLT1A1 LTR MaLR 1 365 0 354 300 33 67 chr1 17432901 17433056 -225231297 - L2 LINE L2 -1000 2314 2166 * 1237 246 145 0 chr1 17433053 17433480 -225230873 + L2 LINE L2 1564 2052 -1262 521 273 30 45 chr1 17433528 17433795 -225230558 + L1ME LINE L1 5344 5606 -515 452 126 25 118 chr1 17433826 17433945 -225230408 - L1MC4 LINE L1 -1 8041 7934 219 114 0 0 chr1 17433950 17433985 -225230368 + (TC)n Simple_repeat Simple_repeat 2 36 0 246 268 0 0 chr1 17433992 17434048 -225230305 + (TA)n Simple_repeat Simple_repeat 2 57 0 253 314 0 0 chr1 17434050 17434136 -225230217 + L1MC4 LINE L1 6616 6701 -1341 1480 205 87 5 chr1 17434148 17434538 -225229815 - L1MC4 LINE L1 -110 7932 7511 314 371 8 0 chr1 17434545 17434677 -225229676 + L2 LINE L2 2918 3050 -263 1733 195 48 75 chr1 17434775 17435173 -225229180 + Cheshire DNA MER1_type 66 473 -1947 2306 141 2 80 chr1 17435173 17435385 -225228968 - L1MB3 LINE L1 -10 6173 5946 1521 174 210 14 chr1 17435385 17435799 -225228554 - LTR54B LTR ERV1 -2 496 2 2306 141 2 80 chr1 17435799 17435953 -225228400 - L1MB3 LINE L1 -237 5946 5848 1906 123 0 18 chr1 17435953 17436230 -225228123 - AluSx SINE Alu -10 302 31 2306 141 2 80 chr1 17436230 17436323 -225228030 - L1MB3 LINE L1 -335 5848 5749 1733 195 48 75 chr1 17436323 17436446 -225227907 + Cheshire DNA MER1_type 473 573 -1847 309 222 0 0 chr1 17436444 17436507 -225227846 + Cheshire DNA MER1_type 2355 2417 -3 * 2795 114 2 66 chr1 17436728 17437185 -225227168 + MSTC LTR MaLR 1 428 0 2130 137 0 13 chr1 17437439 17437787 -225226566 - AluSx SINE Alu 0 312 1 180 247 34 124 chr1 17437948 17438037 -225226316 - L3 LINE CR1 -2 1575 1495 469 329 12 0 chr1 17438431 17438592 -225225761 + MIR SINE MIR 95 257 -5 299 222 0 16 chr1 17438968 17439031 -225225322 - MIR SINE MIR -3 259 198 663 203 26 59 chr1 17439054 17439191 -225225162 + MIR SINE MIR 7 140 -122 1449 277 102 24 chr1 17439191 17439693 -225224660 - MER34 LTR ERV1 -1 541 1 663 203 26 59 chr1 17439693 17439708 -225224645 + MIR SINE MIR 140 154 -108 263 258 15 0 chr1 17439708 17439774 -225224579 + MER116 DNA Mariner 1 67 -13 320 266 0 0 chr1 17439788 17439867 -225224486 + MIR SINE MIR 168 246 -16 442 252 0 10 chr1 17439898 17440001 -225224352 - MIR SINE MIR -113 149 48 2273 109 0 7 chr1 17440005 17440309 -225224044 + AluSx SINE Alu 1 302 -10 181 276 26 53 chr1 17440965 17441041 -225223312 + MIR SINE MIR 8 81 -181 363 262 19 0 chr1 17441052 17441159 -225223194 + MER34 LTR ERV1 19 127 -415 239 232 36 0 chr1 17441167 17441223 -225223130 + Tigger5 DNA MER2_type 1 58 -2265 362 167 14 0 chr1 17441233 17441305 -225223048 - Tigger5 DNA MER2_type -6 2317 2245 456 224 82 66 chr1 17441431 17441707 -225222646 + MER34C LTR ERV1 290 525 -17 384 149 0 40 chr1 17441762 17441836 -225222517 + MER34 LTR ERV1 19 89 -453 262 311 16 0 chr1 17441978 17442100 -225222253 + (TG)n Simple_repeat Simple_repeat 1 124 0 208 272 0 27 chr1 17442131 17442315 -225222038 + (TG)n Simple_repeat Simple_repeat 2 180 0 472 280 5 53 chr1 17442360 17442549 -225221804 + (TG)n Simple_repeat Simple_repeat 1 180 0 1064 213 132 67 chr1 17442709 17443062 -225221291 + LTR56 LTR ERV1 1 387 -58 2457 76 0 10 chr1 17443062 17443365 -225220988 + AluY SINE Alu 1 300 -11 1064 213 132 67 chr1 17443365 17443429 -225220924 + LTR56 LTR ERV1 387 445 0 411 135 54 0 chr1 17443370 17443444 -225220909 + LTR23 LTR ERV1 353 430 -7 360 340 85 0 chr1 17444107 17444248 -225220105 - L2 LINE L2 -2 3270 3118 550 219 185 0 chr1 17444260 17444406 -225219947 - MER53 DNA DNA -1 188 16 998 117 25 31 chr1 17444599 17444762 -225219591 - FRAM SINE Alu -5 171 10 932 197 77 12 chr1 17444949 17445221 -225219132 - MSTB LTR MaLR -116 312 1 3543 145 37 30 chr1 17445221 17445488 -225218865 - MSTB-int LTR MaLR 0 1651 1387 2029 79 0 25 chr1 17445488 17445765 -225218588 + AluSp SINE Alu 35 304 -9 3543 145 37 30 chr1 17445765 17446152 -225218201 - MSTB-int LTR MaLR -264 1387 993 2360 93 0 0 chr1 17446158 17446468 -225217885 - AluSx SINE Alu -2 310 1 636 184 37 0 chr1 17446531 17446640 -225217713 + MSTB1 LTR MaLR 320 432 0 1505 98 17 51 chr1 17447072 17447307 -225217046 - MER30 DNA MER1_type -1 229 3 2169 111 0 0 chr1 17447361 17447658 -225216695 + AluSx SINE Alu 1 297 -15 975 249 45 110 chr1 17447899 17447950 -225216403 - LTR24B LTR ERV1 -7 569 516 1861 135 27 3 chr1 17447950 17448247 -225216106 + AluJo SINE Alu 1 304 -8 975 249 45 110 chr1 17448247 17448705 -225215648 - LTR24B LTR ERV1 -60 516 93 29 0 0 0 chr1 17448840 17448869 -225215484 + AT_rich Low_complexity Low_complexity 1 29 0 2302 91 0 0 chr1 17448870 17449167 -225215186 - AluSx SINE Alu -15 297 1 1472 172 0 39 chr1 17449219 17449488 -225214865 - L1MB2 LINE L1 -2 6169 5910 1013 96 0 15 chr1 17449488 17449623 -225214730 + FLAM_C SINE Alu 1 133 0 1472 172 0 39 chr1 17449623 17449638 -225214715 - L1MB2 LINE L1 -261 5910 5896 1916 128 3 26 chr1 17449737 17450043 -225214310 - AluJb SINE Alu -13 299 1 2313 57 20 10 chr1 17450048 17450346 -225214007 - AluY SINE Alu -10 301 1 534 266 70 13 chr1 17450347 17450505 -225213848 - MIR SINE MIR -65 197 31 422 178 11 0 chr1 17450605 17450695 -225213658 + (TG)n Simple_repeat Simple_repeat 1 91 0 255 264 0 14 chr1 17450891 17450963 -225213390 + MIR SINE MIR 66 136 -72 2286 109 0 0 chr1 17451424 17451736 -225212617 + AluSx SINE Alu 1 312 0 396 203 88 92 chr1 17451760 17451856 -225212497 - MER33 DNA MER1_type -2283 302 207 1620 176 0 13 chr1 17451856 17452162 -225212191 - AluJo SINE Alu -10 302 1 396 203 88 92 chr1 17452162 17452282 -225212071 - MER33 DNA MER1_type -2378 207 87 2439 118 52 0 chr1 17452282 17452733 -225211620 + MER1A DNA MER1_type 1 529 0 260 221 195 0 chr1 17452733 17452808 -225211545 - MER33 DNA MER1_type -230 94 5 479 285 91 43 chr1 17452894 17453080 -225211273 + MIR SINE MIR 59 253 -9 2359 159 54 0 chr1 17453118 17453527 -225210826 + MLT2C2 LTR ERVL 2 480 -40 315 331 28 35 chr1 17453947 17454089 -225210264 + L2 LINE L2 2679 2819 -495 410 298 158 14 chr1 17454199 17454414 -225209939 - MIR SINE MIR -3 259 14 410 260 0 55 chr1 17454429 17454556 -225209797 + MIR SINE MIR 132 251 -11 261 280 154 32 chr1 17455206 17455394 -225208959 - MIR SINE MIR -12 250 42 405 285 124 59 chr1 17455481 17455667 -225208686 + MIR SINE MIR 65 262 0 2256 97 3 0 chr1 17456049 17456349 -225208004 + AluSp SINE Alu 1 301 -12 200 359 78 14 chr1 17457278 17457420 -225206933 + L2 LINE L2 2967 3117 -155 21 36 0 0 chr1 17457617 17457645 -225206708 + GC_rich Low_complexity Low_complexity 1 28 0 218 300 0 36 chr1 17458154 17458264 -225206089 + C-rich Low_complexity Low_complexity 2 107 0 185 250 36 18 chr1 17459152 17459208 -225205145 + MIR3 SINE MIR 114 170 -38 1193 179 49 11 chr1 17459700 17459985 -225204368 - MER33 DNA MER1_type -28 296 1 1016 148 133 15 chr1 17459993 17460189 -225204164 - MER20 DNA MER1_type 0 219 1 439 268 155 12 chr1 17460336 17460504 -225203849 - MIR SINE MIR -70 192 1 293 203 34 0 chr1 17460937 17460996 -225203357 + MIR SINE MIR 62 122 -86 866 271 41 22 chr1 17462183 17462497 -225201856 + L2 LINE L2 2825 3144 -169 575 184 73 124 chr1 17462505 17462730 -225201623 - MIR SINE MIR -2 260 38 321 26 0 0 chr1 17462818 17462856 -225201497 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 498 339 22 0 chr1 17463592 17463815 -225200538 + MIR SINE MIR 20 245 -17 348 24 0 0 chr1 17463840 17463881 -225200472 + (TAA)n Simple_repeat Simple_repeat 2 42 0 288 323 30 0 chr1 17464033 17464132 -225200221 - L2 LINE L2 -190 3082 2981 208 333 10 21 chr1 17464255 17464351 -225200002 - L2 LINE L2 -510 2804 2710 629 271 56 113 chr1 17464916 17465339 -225199014 + L2 LINE L2 2548 2994 -278 950 217 27 0 chr1 17465339 17465523 -225198830 + MER5A DNA MER1_type 1 189 0 629 271 56 113 chr1 17465523 17465736 -225198617 + L2 LINE L2 2994 3146 -126 2147 100 0 23 chr1 17465736 17466046 -225198307 + AluSx SINE Alu 3 305 -7 629 271 56 113 chr1 17466046 17466166 -225198187 + L2 LINE L2 3146 3271 -1 198 0 0 0 chr1 17466251 17466273 -225198080 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1933 151 0 3 chr1 17467338 17467643 -225196710 + AluSx SINE Alu 1 304 -8 2305 96 0 16 chr1 17467712 17468026 -225196327 - AluSx SINE Alu -3 309 1 333 258 62 10 chr1 17468108 17468205 -225196148 - MIR3 SINE MIR -49 159 58 436 278 48 16 chr1 17468216 17468403 -225195950 + MER113 DNA MER1_type? 2 194 -327 201 326 70 0 chr1 17468549 17468635 -225195718 - L2 LINE L2 -37 3235 3144 188 241 48 96 chr1 17468779 17468862 -225195491 - MIR3 SINE MIR -127 81 3 2246 94 0 0 chr1 17468880 17469179 -225195174 + AluSx SINE Alu 1 299 -13 384 253 72 98 chr1 17469515 17469709 -225194644 - MER5A DNA MER1_type 0 189 1 198 277 15 15 chr1 17469834 17469899 -225194454 + MER5A DNA MER1_type 125 189 0 865 248 82 32 chr1 17470111 17470396 -225193957 - MLT1B LTR MaLR -23 442 119 2242 97 7 0 chr1 17470396 17470695 -225193658 + AluSx SINE Alu 11 311 -1 865 248 82 32 chr1 17470695 17470821 -225193532 - MLT1B LTR MaLR -346 119 1 334 285 17 76 chr1 17471183 17471355 -225192998 - MER5A DNA MER1_type -2 187 26 1528 172 11 19 chr1 17471416 17471435 -225192918 - AluJb SINE Alu -19 293 275 2134 117 7 0 chr1 17471435 17471743 -225192610 + AluSp SINE Alu 1 310 -3 1528 172 11 19 chr1 17471743 17471990 -225192363 - AluJb SINE Alu -37 275 29 667 185 16 53 chr1 17472316 17472396 -225191957 - MER33 DNA MER1_type -2261 324 243 2519 46 3 0 chr1 17472396 17472702 -225191651 + AluY SINE Alu 1 307 -4 667 185 16 53 chr1 17472702 17472810 -225191543 - MER33 DNA MER1_type -2342 243 143 2088 73 3 31 chr1 17472810 17473128 -225191225 - AluY SINE Alu 0 310 1 1263 148 5 18 chr1 17473130 17473347 -225191006 - AluJo SINE Alu -15 297 84 425 208 57 9 chr1 17473349 17473455 -225190898 - MER33 DNA MER1_type -185 139 29 473 299 55 6 chr1 17474594 17474758 -225189595 - MIR3 SINE MIR -34 174 3 192 275 0 58 chr1 17474902 17474971 -225189382 - MIR3 SINE MIR -9 199 135 469 325 5 41 chr1 17475136 17475333 -225189020 - MIR SINE MIR -3 259 70 2280 97 0 0 chr1 17476169 17476468 -225187885 + AluSg SINE Alu 1 299 -11 2277 100 0 0 chr1 17476544 17476853 -225187500 + AluSx SINE Alu 1 309 -3 337 274 96 35 chr1 17477173 17477393 -225186960 + MIR SINE MIR 14 252 -10 436 268 24 16 chr1 17477530 17477657 -225186696 + MIR3 SINE MIR 49 176 -32 250 289 94 8 chr1 17478962 17479090 -225185263 + MIR3 SINE MIR 15 153 -55 183 354 46 0 chr1 17479455 17479520 -225184833 + MIR SINE MIR 108 175 -87 * 210 361 131 0 chr1 17479493 17479615 -225184738 + L2 LINE L2 3132 3269 -3 1146 152 37 5 chr1 17480077 17480268 -225184085 + MER20 DNA MER1_type 6 202 -17 460 230 9 0 chr1 17480307 17480414 -225183939 - MIR SINE MIR -62 146 40 266 347 41 16 chr1 17480746 17480867 -225183486 + MIR SINE MIR 23 146 -62 194 207 17 0 chr1 17481657 17481715 -225182638 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 769 287 68 53 chr1 17482424 17483015 -225181338 - L2 LINE L2 -1 3271 2667 2224 126 0 0 chr1 17483735 17484045 -225180308 + AluSg SINE Alu 1 310 0 243 211 60 75 chr1 17484053 17484150 -225180203 + L1ME4a LINE L1 5964 6060 -61 1938 167 0 0 chr1 17484150 17484462 -225179891 - AluJo SINE Alu 0 312 1 243 211 60 75 chr1 17484462 17484497 -225179856 + L1ME4a LINE L1 6060 6094 -27 817 250 162 26 chr1 17485236 17485755 -225178598 - L2 LINE L2 -17 3296 2689 333 0 0 0 chr1 17486510 17486547 -225177806 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 331 6 79 chr1 17486765 17486943 -225177410 + MIR SINE MIR 94 258 -4 473 247 0 0 chr1 17487106 17487199 -225177154 - MER81 DNA DNA -21 93 1 384 253 58 86 chr1 17488102 17488197 -225176156 - MIR SINE MIR -82 180 91 2331 92 0 0 chr1 17488197 17488502 -225175851 - AluSg SINE Alu -5 305 1 384 253 58 86 chr1 17488502 17488580 -225175773 - MIR SINE MIR -171 91 12 1854 133 0 23 chr1 17489323 17489658 -225174695 + AluSx SINE Alu 1 312 0 519 297 35 0 chr1 17489966 17490111 -225174242 + MIR SINE MIR 5 154 -108 269 241 46 46 chr1 17490176 17490263 -225174090 - MIR SINE MIR -63 145 59 262 285 42 145 chr1 17491392 17491606 -225172747 + MIR SINE MIR 19 210 -52 858 239 26 90 chr1 17492063 17492331 -225172022 + MIR SINE MIR 1 251 -11 467 299 224 5 chr1 17492557 17492771 -225171582 + MIR SINE MIR 2 262 0 238 213 0 0 chr1 17492840 17492887 -225171466 - L2 LINE L2 0 3313 3267 384 274 98 34 chr1 17493524 17493728 -225170625 + L1MC4a LINE L1 5656 5872 -1936 1181 140 23 0 chr1 17493771 17493942 -225170411 - AluSg/x SINE Alu -17 293 119 1959 145 3 10 chr1 17493956 17494253 -225170100 + AluJo SINE Alu 1 295 -17 272 238 16 82 chr1 17494654 17494776 -225169577 + MIR3 SINE MIR 88 201 -7 2133 118 38 3 chr1 17495010 17495298 -225169055 - AluSx SINE Alu -14 298 1 251 28 28 0 chr1 17495299 17495335 -225169018 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 668 280 55 38 chr1 17495663 17495899 -225168454 + MIR SINE MIR 23 262 0 275 173 0 0 chr1 17496433 17496485 -225167868 + MER117 DNA MER1_type 61 112 -85 792 288 26 34 chr1 17496564 17496930 -225167423 - MLT1I LTR MaLR -32 377 47 2157 118 14 0 chr1 17497038 17497335 -225167018 + AluSx SINE Alu 1 301 -11 277 286 0 8 chr1 17497420 17497539 -225166814 + (CA)n Simple_repeat Simple_repeat 1 118 0 1987 147 4 0 chr1 17498137 17498441 -225165912 + AluJb SINE Alu 5 309 0 1711 150 58 0 chr1 17498441 17498715 -225165638 + AluSx SINE Alu 1 290 -22 2386 74 3 0 chr1 17498718 17499028 -225165325 + AluSp SINE Alu 1 311 0 343 274 83 83 chr1 17499464 17499705 -225164648 - L2 LINE L2 0 3272 3032 * 1093 284 120 27 chr1 17499704 17500246 -225164107 - L2 LINE L2 -13 3300 2726 2039 120 23 23 chr1 17500252 17500561 -225163792 + AluSc SINE Alu 1 309 0 194 189 0 0 chr1 17500563 17500600 -225163753 - L2 LINE L2 -221 3051 3015 2240 116 0 0 chr1 17500618 17500911 -225163442 + AluSg SINE Alu 3 295 -15 935 203 10 0 chr1 17501611 17501808 -225162545 - MER33 DNA MER1_type -116 208 10 736 205 0 8 chr1 17502594 17502716 -225161637 + AluJo/FLAM SINE Alu 1 121 -191 2345 107 0 0 chr1 17502719 17503019 -225161334 - AluSq SINE Alu -13 300 1 1311 130 39 0 chr1 17503352 17503559 -225160794 - L1PA16 LINE L1 0 6166 5952 474 234 0 16 chr1 17503564 17503688 -225160665 - L1MB4 LINE L1 0 6180 6059 2494 70 0 0 chr1 17503695 17503993 -225160360 - AluY SINE Alu -13 298 1 1033 236 54 8 chr1 17504910 17505151 -225159202 + MIR SINE MIR 11 262 0 231 238 79 0 chr1 17505959 17506022 -225158331 + MIR SINE MIR 83 150 -112 871 159 0 7 chr1 17506025 17506163 -225158190 + FLAM_C SINE Alu 1 137 -6 2202 124 0 0 chr1 17506167 17506465 -225157888 + AluSx SINE Alu 1 298 -14 369 234 112 0 chr1 17506465 17506572 -225157781 + MIR SINE MIR 142 260 -2 187 250 23 0 chr1 17506639 17506683 -225157670 + L2 LINE L2 3210 3254 -18 246 272 99 0 chr1 17507129 17507210 -225157143 + MIR SINE MIR 43 131 -77 307 273 0 23 chr1 17507374 17507546 -225156807 + (CATA)n Simple_repeat Simple_repeat 2 169 0 320 272 19 19 chr1 17507560 17507663 -225156690 + (CATA)n Simple_repeat Simple_repeat 4 106 0 259 269 378 0 chr1 17507663 17507819 -225156534 + MIR SINE MIR 36 250 -12 378 293 8 32 chr1 17509384 17509507 -225154846 - L2 LINE L2 -1 3271 3152 198 103 0 0 chr1 17509897 17509926 -225154427 + (T)n Simple_repeat Simple_repeat 1 29 0 729 211 138 32 chr1 17510608 17510668 -225153685 - LTR16A1 LTR ERVL -11 446 394 1844 146 3 32 chr1 17510668 17510977 -225153376 + AluJo SINE Alu 1 300 -12 729 211 138 32 chr1 17510977 17511163 -225153190 - LTR16A1 LTR ERVL -63 394 174 2246 109 7 7 chr1 17511667 17511971 -225152382 - AluSc SINE Alu -1 308 5 1578 123 42 19 chr1 17512170 17512479 -225151874 - MER33 DNA MER1_type 0 324 9 2317 101 3 0 chr1 17513502 17513800 -225150553 + AluSx SINE Alu 1 299 -13 264 216 0 0 chr1 17513827 17513878 -225150475 + L2 LINE L2 3221 3271 -1 271 200 40 0 chr1 17513956 17514031 -225150322 - MER116 DNA Mariner -2 78 1 825 222 58 0 chr1 17514032 17514203 -225150150 - MIR SINE MIR -54 208 28 2236 135 0 0 chr1 17514249 17514561 -225149792 + AluSx SINE Alu 1 312 0 384 320 8 0 chr1 17514904 17515032 -225149321 + MER94 DNA DNA 5 133 -1 184 339 0 0 chr1 17515049 17515111 -225149242 - L2 LINE L2 -86 3186 3125 190 243 0 0 chr1 17515126 17515163 -225149190 + L2 LINE L2 3277 3313 0 267 335 79 13 chr1 17515561 17515713 -225148640 + L1MC4a LINE L1 5763 5924 -1884 2059 89 7 55 chr1 17515730 17516048 -225148305 + AluSg SINE Alu 1 304 0 470 314 63 22 chr1 17516413 17516611 -225147742 - MIR SINE MIR -52 210 6 481 278 37 25 chr1 17517384 17517546 -225146807 + MIR SINE MIR 72 235 -27 1734 138 19 80 chr1 17517823 17517954 -225146399 + AluJo SINE Alu 3 140 -172 2365 88 3 0 chr1 17517954 17518249 -225146104 - AluSx SINE Alu -16 296 1 1734 138 19 80 chr1 17518249 17518442 -225145911 + AluJo SINE Alu 140 307 -5 341 340 101 30 chr1 17518497 17518794 -225145559 - L2 LINE L2 -99 3173 2856 292 290 180 10 chr1 17518830 17519030 -225145323 - L2 LINE L2 -801 2513 2280 2380 84 0 10 chr1 17519077 17519376 -225144977 + AluY SINE Alu 1 296 -15 2025 146 0 16 chr1 17519597 17519912 -225144441 - AluJb SINE Alu -2 310 1 268 337 22 0 chr1 17520803 17520895 -225143458 - MIR3 SINE MIR -34 174 81 183 355 16 0 chr1 17521354 17521416 -225142937 + MIR SINE MIR 157 219 -43 466 250 74 27 chr1 17521515 17521663 -225142690 + L2 LINE L2 3159 3313 0 1524 111 97 62 chr1 17521861 17521995 -225142358 + AluJo SINE Alu 1 129 -183 2454 73 0 7 chr1 17521995 17522298 -225142055 + AluSg1 SINE Alu 1 301 -8 1524 111 97 62 chr1 17522298 17522451 -225141902 + AluJo SINE Alu 129 298 -14 2393 81 0 3 chr1 17522453 17522751 -225141602 + AluSg SINE Alu 1 297 -13 305 315 27 36 chr1 17523433 17523544 -225140809 - MIR SINE MIR -147 115 6 187 242 187 11 chr1 17523804 17523895 -225140458 + MIR SINE MIR 119 225 -37 204 229 177 42 chr1 17524357 17524453 -225139900 + MIR SINE MIR 40 148 -114 190 288 38 25 chr1 17524880 17524960 -225139393 + L2 LINE L2 3141 3221 -92 2340 93 0 26 chr1 17524983 17525295 -225139058 + AluSq SINE Alu 2 305 -8 396 299 26 0 chr1 17525440 17525557 -225138796 - MIR SINE MIR -90 172 53 208 311 179 0 chr1 17526141 17526247 -225138106 + MIR SINE MIR 126 250 -12 2242 99 0 20 chr1 17526458 17526762 -225137591 - AluSq SINE Alu -15 298 1 2015 98 57 14 chr1 17527182 17527479 -225136874 + AluYa5 SINE Alu 2 311 0 1957 149 14 0 chr1 17527532 17527827 -225136526 + AluSx SINE Alu 1 299 -13 1689 168 75 0 chr1 17527838 17528118 -225136235 + AluJo SINE Alu 1 301 -11 2291 113 0 19 chr1 17528118 17528437 -225135916 + AluSq SINE Alu 1 313 0 2939 187 14 50 chr1 17528542 17529152 -225135201 + L1MD1 LINE L1 5560 6190 -52 1555 172 25 21 chr1 17529152 17529431 -225134922 + AluJb SINE Alu 3 282 -30 1864 150 0 21 chr1 17529431 17529718 -225134635 - AluSx SINE Alu -15 297 17 2939 187 14 50 chr1 17529718 17529743 -225134610 + L1MD1 LINE L1 6189 6213 -29 2311 122 3 0 chr1 17529743 17530054 -225134299 - AluSx SINE Alu 0 312 1 2939 187 14 50 chr1 17530054 17530112 -225134241 + L1MD1 LINE L1 6213 6232 -10 2263 112 3 0 chr1 17530112 17530415 -225133938 + AluSp SINE Alu 1 304 -9 950 215 127 16 chr1 17530430 17530746 -225133607 + L1ME1 LINE L1 5811 6161 -5 1039 206 84 4 chr1 17531078 17531364 -225132989 - MER51A LTR ERV1 0 640 334 1701 183 52 0 chr1 17531500 17531789 -225132564 - AluJb SINE Alu 0 312 9 302 278 69 62 chr1 17531959 17532103 -225132250 + L2 LINE L2 3169 3313 0 2221 127 0 3 chr1 17532503 17532803 -225131550 + AluSx SINE Alu 1 299 -13 1308 260 88 8 chr1 17533067 17533432 -225130921 - MLT1E2 LTR MaLR -1 625 232 316 324 77 53 chr1 17533755 17533868 -225130485 + L1M4 LINE L1 2725 2834 -3312 2393 101 3 0 chr1 17533868 17534174 -225130179 + AluSx SINE Alu 1 307 -5 316 324 77 53 chr1 17534174 17534307 -225130046 + L1M4 LINE L1 2834 2977 -3169 1925 163 7 0 chr1 17534344 17534633 -225129720 - AluJb SINE Alu -21 291 1 706 274 18 27 chr1 17534680 17534903 -225129450 + L1ME LINE L1 11 231 -5839 354 151 0 0 chr1 17534944 17534997 -225129356 + Alu SINE Alu 1 53 -248 1618 114 0 0 chr1 17534998 17535209 -225129144 + AluSg/x SINE Alu 92 302 -10 488 250 0 8 chr1 17535212 17535340 -225129013 + L1ME LINE L1 276 402 -5668 229 272 0 12 chr1 17535343 17535424 -225128929 + L1ME LINE L1 518 597 -5473 2140 110 27 0 chr1 17535439 17535739 -225128614 - AluSx SINE Alu -2 310 3 2178 255 48 64 chr1 17535740 17535969 -225128384 + L1ME LINE L1 738 969 -5292 2318 115 3 3 chr1 17535969 17536281 -225128072 - AluSx SINE Alu 0 312 1 2178 255 48 64 chr1 17536281 17536365 -225127988 + L1ME LINE L1 969 1053 -5208 1655 181 3 35 chr1 17536365 17536652 -225127701 + AluJo SINE Alu 1 278 -34 2178 255 48 64 chr1 17536652 17537495 -225126858 + L1ME LINE L1 1053 1910 -4351 1563 142 18 121 chr1 17537495 17537826 -225126527 - AluJo SINE Alu -5 297 1 2178 255 48 64 chr1 17537826 17538126 -225126227 + L1ME LINE L1 1910 2213 -4048 1247 206 24 187 chr1 17538159 17538754 -225125599 + L1M4 LINE L1 3846 4341 -1805 685 227 45 23 chr1 17538792 17538916 -225125437 + L1M4 LINE L1 4108 4228 -1918 1670 142 3 87 chr1 17538916 17538976 -225125377 + AluJo SINE Alu 1 64 -248 2345 87 0 10 chr1 17538976 17539274 -225125079 - AluSp SINE Alu -18 295 1 1670 142 3 87 chr1 17539274 17539372 -225124981 + AluJo SINE Alu 64 169 -143 2022 153 0 0 chr1 17539372 17539660 -225124693 + AluSx SINE Alu 1 288 -24 1670 142 3 87 chr1 17539660 17539685 -225124668 + AluJo SINE Alu 169 304 -8 918 122 7 14 chr1 17539685 17539832 -225124521 + AluJb SINE Alu 159 304 -8 685 227 45 23 chr1 17539832 17539927 -225124426 + L1M4 LINE L1 4228 4332 -1814 757 146 0 46 chr1 17540172 17540302 -225124051 + FLAM_C SINE Alu 2 125 -18 332 275 10 53 chr1 17540314 17540486 -225123867 - L1MC4 LINE L1 -1339 6703 6500 343 143 95 19 chr1 17540503 17540608 -225123745 + L1M4 LINE L1 4314 4426 -1720 1052 168 33 37 chr1 17540611 17540825 -225123528 + AluJb SINE Alu 91 303 -9 1293 183 8 4 chr1 17540825 17541071 -225123282 + L1M4 LINE L1 4446 4692 -1454 1832 94 17 42 chr1 17541231 17541559 -225122794 - AluY SINE Alu 0 321 1 451 272 24 16 chr1 17542138 17542263 -225122090 + L2 LINE L2 3187 3312 -1 1815 106 4 0 chr1 17542449 17542695 -225121658 + AluSx SINE Alu 1 247 -65 1743 148 10 7 chr1 17542695 17542986 -225121367 + AluJb SINE Alu 16 307 -5 181 200 0 50 chr1 17543084 17543124 -225121229 - L2 LINE L2 -15 3298 3261 * 355 263 212 0 chr1 17543090 17543227 -225121126 - MIR SINE MIR -13 249 84 297 340 136 12 chr1 17543264 17543426 -225120927 - MIR SINE MIR -30 232 51 2110 83 45 0 chr1 17544642 17544930 -225119423 + AluSx SINE Alu 2 302 -10 383 223 47 54 chr1 17545144 17545292 -225119061 - MIR SINE MIR -95 167 21 21 0 0 0 chr1 17545826 17545847 -225118506 + AT_rich Low_complexity Low_complexity 1 21 0 784 144 30 23 chr1 17546040 17546172 -225118181 + FLAM_C SINE Alu 1 133 0 1950 76 4 0 chr1 17546192 17546443 -225117910 + AluSg SINE Alu 43 294 -16 1570 173 6 77 chr1 17546794 17546921 -225117432 + AluJo SINE Alu 2 136 -166 1874 128 45 0 chr1 17546921 17547209 -225117144 - AluSx SINE Alu -11 301 1 1570 173 6 77 chr1 17547209 17547405 -225116948 + AluJo SINE Alu 136 302 0 1010 76 0 0 chr1 17547566 17547698 -225116655 + AluSp/q SINE Alu 170 301 -12 1806 152 0 53 chr1 17547712 17548035 -225116318 + AluJo SINE Alu 7 312 0 385 292 22 73 chr1 17548072 17548250 -225116103 - MLT1J LTR MaLR -113 398 230 243 88 0 0 chr1 17549221 17549255 -225115098 + (TTC)n Simple_repeat Simple_repeat 2 35 0 241 260 173 10 chr1 17549638 17549742 -225114611 - Charlie8 DNA MER1_type -2270 147 27 26 0 0 0 chr1 17550172 17550198 -225114155 + AT_rich Low_complexity Low_complexity 1 26 0 607 175 0 124 chr1 17550199 17550336 -225114017 + FLAM_A SINE Alu 1 120 -13 2091 132 7 0 chr1 17550466 17550770 -225113583 + AluSx SINE Alu 1 306 -6 1440 148 26 0 chr1 17551076 17551306 -225113047 - MER46A DNA MER2_type 0 236 1 270 152 22 0 chr1 17551435 17551481 -225112872 - MER57A LTR ERV1 -66 337 291 1374 152 0 0 chr1 17551504 17551721 -225112632 + AluJo SINE Alu 86 302 -10 936 265 109 18 chr1 17551724 17552181 -225112172 - L1ME4a LINE L1 -92 6029 5531 420 313 55 15 chr1 17552369 17552570 -225111783 + MIR SINE MIR 2 210 -52 743 198 148 6 chr1 17555191 17555353 -225109000 - MSTD LTR MaLR 0 396 212 2240 73 3 17 chr1 17555366 17555666 -225108687 - AluSp SINE Alu -17 296 1 994 136 39 0 chr1 17555677 17555831 -225108522 - FRAM SINE Alu -20 156 1 970 165 29 0 chr1 17555832 17556002 -225108351 - MSTD LTR MaLR -221 175 1 352 83 0 0 chr1 17556396 17556444 -225107909 + MIR SINE MIR 204 251 -11 182 390 0 0 chr1 17556492 17556569 -225107784 + MER5A DNA MER1_type 95 171 -18 * 201 355 0 0 chr1 17556507 17556583 -225107770 - MER5B DNA MER1_type -98 80 5 583 223 54 43 chr1 17556689 17556873 -225107480 - MIR3 SINE MIR -4 204 19 1083 125 80 45 chr1 17557174 17557374 -225106979 + AluJo SINE Alu 83 289 -23 239 197 0 33 chr1 17557380 17557441 -225106912 + CT-rich Low_complexity Low_complexity 1 59 0 493 295 2 2 chr1 17558537 17558693 -225105660 + MIR SINE MIR 30 184 -63 2084 120 3 3 chr1 17558959 17559268 -225105085 + AluSx SINE Alu 1 309 -3 1092 172 6 0 chr1 17559408 17559582 -225104771 + FAM SINE Alu 1 175 0 587 156 0 11 chr1 17559601 17559691 -225104662 + FLAM_C SINE Alu 29 117 -26 1755 54 9 5 chr1 17559796 17560020 -225104333 - AluY SINE Alu -86 225 1 2523 50 0 0 chr1 17560100 17560403 -225103950 - AluY SINE Alu -8 303 1 238 256 71 0 chr1 17560453 17560528 -225103825 - L1MC/D LINE L1 -329 5792 5731 1722 112 80 14 chr1 17561116 17561402 -225102951 - AluSx SINE Alu -7 305 1 869 183 59 16 chr1 17561720 17561906 -225102447 + AluJo SINE Alu 115 308 -4 311 282 121 16 chr1 17561962 17562086 -225102267 + MIR SINE MIR 112 248 -14 1582 129 24 87 chr1 17562391 17562724 -225101629 + AluJb SINE Alu 1 312 0 387 0 0 0 chr1 17563311 17563354 -225100999 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 276 317 32 23 chr1 17563472 17563625 -225100728 - MIR SINE MIR -46 162 2 410 229 33 16 chr1 17563871 17563993 -225100360 + L2 LINE L2 2392 2515 -799 258 348 116 0 chr1 17564170 17564282 -225100071 + L2 LINE L2 3146 3270 -2 1218 100 6 0 chr1 17564697 17564867 -225099486 - AluSp SINE Alu -9 304 134 323 257 49 35 chr1 17564867 17565039 -225099314 - MIR SINE MIR -60 202 25 24 106 0 0 chr1 17565277 17565371 -225098982 + GC_rich Low_complexity Low_complexity 1 94 0 299 275 117 8 chr1 17566395 17566515 -225097838 + MIR SINE MIR 51 183 -79 592 243 20 7 chr1 17566542 17566694 -225097659 + MIR SINE MIR 59 212 -50 1891 121 0 0 chr1 17566751 17567015 -225097338 + AluSx SINE Alu 1 264 -48 1793 147 13 19 chr1 17567434 17567747 -225096606 + AluJo SINE Alu 1 311 -1 2094 72 20 46 chr1 17568154 17568460 -225095893 - AluY SINE Alu -13 298 1 221 254 34 17 chr1 17568663 17568753 -225095600 - MIR SINE MIR -64 144 80 1188 135 47 0 chr1 17568783 17568975 -225095378 + AluJb SINE Alu 91 291 -21 421 75 0 0 chr1 17568994 17569047 -225095306 + Alu SINE Alu 1 53 -259 213 39 0 0 chr1 17569064 17569090 -225095263 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2586 39 0 0 chr1 17569279 17569585 -225094768 + AluY SINE Alu 2 307 -4 273 234 9 81 chr1 17569690 17569801 -225094552 - MER5A DNA MER1_type -44 145 43 1893 107 50 0 chr1 17569952 17570233 -225094120 + AluSx SINE Alu 1 295 -17 2309 94 0 0 chr1 17570578 17570876 -225093477 + AluSx SINE Alu 1 298 -14 2141 114 3 3 chr1 17570966 17571274 -225093079 - AluSx SINE Alu -2 310 3 301 324 45 40 chr1 17571789 17571965 -225092388 + MIR3 SINE MIR 17 193 -15 284 290 21 11 chr1 17572445 17572538 -225091815 + MIR3 SINE MIR 93 186 -22 487 314 21 21 chr1 17572844 17573038 -225091315 + MIR SINE MIR 15 208 -54 2237 112 0 0 chr1 17573167 17573472 -225090881 + AluSg SINE Alu 1 305 -5 393 22 0 0 chr1 17573497 17573543 -225090810 + (TG)n Simple_repeat Simple_repeat 1 46 0 2128 113 3 0 chr1 17573544 17573853 -225090500 - AluSq SINE Alu -3 310 1 385 268 10 0 chr1 17573861 17573958 -225090395 - LTR16C LTR ERVL -4 487 390 675 261 32 5 chr1 17574287 17574475 -225089878 - MIR SINE MIR 0 262 70 229 204 20 0 chr1 17574907 17574956 -225089397 + MIR SINE MIR 99 148 -60 196 314 48 19 chr1 17575423 17575528 -225088825 - MIR SINE MIR -74 188 81 2124 115 0 31 chr1 17575670 17575993 -225088360 - AluSq SINE Alu 0 313 1 495 308 103 6 chr1 17575995 17576151 -225088202 + MIR SINE MIR 79 249 -13 1430 157 0 0 chr1 17576163 17576398 -225087955 - AluJb SINE Alu -6 306 72 1980 142 3 0 chr1 17577201 17577504 -225086849 - AluSx SINE Alu -3 309 6 281 270 11 34 chr1 17577533 17577622 -225086731 + MIR SINE MIR 57 143 -119 2173 117 3 0 chr1 17577723 17578030 -225086323 - AluSq SINE Alu -5 308 1 313 321 171 20 chr1 17578251 17578503 -225085850 - L1MC4a LINE L1 -1869 5939 5650 1906 151 0 3 chr1 17578623 17578922 -225085431 + AluSx SINE Alu 1 298 -14 276 100 17 33 chr1 17579222 17579282 -225085071 + (TCCCC)n Simple_repeat Simple_repeat 3 61 0 2079 104 7 0 chr1 17579282 17579569 -225084784 - AluSq SINE Alu -24 289 1 229 26 26 26 chr1 17579780 17579818 -225084535 + MIR SINE MIR 108 145 -117 245 329 98 0 chr1 17580166 17580309 -225084044 + MIR3 SINE MIR 17 173 -35 1873 106 84 0 chr1 17581383 17581657 -225082696 + AluSx SINE Alu 1 297 -15 2144 111 0 3 chr1 17582167 17582465 -225081888 + AluSg SINE Alu 1 297 -13 2207 96 0 0 chr1 17582596 17582931 -225081422 + AluSx SINE Alu 1 335 0 207 295 181 13 chr1 17583012 17583161 -225081192 - L2 LINE L2 -182 3090 2917 1706 129 49 21 chr1 17583621 17583907 -225080446 + AluJb SINE Alu 1 294 -18 1961 144 0 3 chr1 17583912 17584204 -225080149 + AluSx SINE Alu 1 291 -21 429 318 101 28 chr1 17584235 17584452 -225079901 - MIR SINE MIR -19 243 11 383 250 150 14 chr1 17585488 17585628 -225078725 - MIR SINE MIR -15 247 89 861 157 0 0 chr1 17585744 17585878 -225078475 + AluJb SINE Alu 1 134 -178 2227 88 0 3 chr1 17585878 17586174 -225078179 + AluSx SINE Alu 1 295 -17 1945 110 3 17 chr1 17586310 17586610 -225077743 + AluSx SINE Alu 3 298 -14 347 226 65 0 chr1 17586672 17586765 -225077588 - MIR SINE MIR -123 139 41 1822 146 7 3 chr1 17587618 17587905 -225076448 + AluJb SINE Alu 1 288 -24 1908 107 50 11 chr1 17587913 17588193 -225076160 + AluSx SINE Alu 2 291 -21 2339 73 0 3 chr1 17588195 17588483 -225075870 + AluSq SINE Alu 1 320 0 277 30 0 0 chr1 17588483 17588516 -225075837 + (TAA)n Simple_repeat Simple_repeat 2 180 0 221 323 32 0 chr1 17588522 17588584 -225075769 - L2 LINE L2 -18 3295 3232 190 328 35 0 chr1 17589081 17589139 -225075214 + MIR SINE MIR 41 100 -162 2470 75 0 0 chr1 17591454 17591761 -225072592 - AluSx SINE Alu -5 307 1 353 226 349 7 chr1 17591767 17591913 -225072440 - MIR SINE MIR -51 211 16 2114 138 0 3 chr1 17592793 17593104 -225071249 - AluJb SINE Alu -2 310 1 282 370 24 51 chr1 17593561 17593815 -225070538 - L2 LINE L2 0 3313 3067 1844 142 6 29 chr1 17594137 17594448 -225069905 + AluSx SINE Alu 1 304 -8 1816 137 38 20 chr1 17594458 17594751 -225069602 + AluSx SINE Alu 1 298 -14 1612 218 98 26 chr1 17594751 17594911 -225069442 - LTR64 LTR ERVK -23 535 388 1738 128 39 64 chr1 17594911 17595223 -225069130 + AluJo SINE Alu 1 304 -8 1612 218 98 26 chr1 17595223 17595561 -225068792 - LTR64 LTR ERVK -170 388 1 206 277 214 46 chr1 17595561 17595799 -225068554 - L2 LINE L2 -721 2593 2316 601 192 0 96 chr1 17595846 17595992 -225068361 + FLAM_C SINE Alu 1 132 -1 187 359 17 0 chr1 17596022 17596139 -225068214 - L2 LINE L2 -1192 2122 2004 208 269 90 0 chr1 17596155 17596222 -225068131 + MIR SINE MIR 72 144 -118 25 75 0 0 chr1 17596563 17596616 -225067737 + GC_rich Low_complexity Low_complexity 1 53 0 699 279 128 28 chr1 17599349 17599771 -225064582 - L2 LINE L2 0 3272 2799 210 321 46 0 chr1 17600360 17600469 -225063884 + (CCCCAG)n Simple_repeat Simple_repeat 4 117 0 2063 115 10 13 chr1 17603056 17603361 -225060992 + AluSx SINE Alu 1 304 -8 436 249 24 79 chr1 17603436 17603601 -225060752 - MIR SINE MIR -74 188 33 440 214 164 13 chr1 17603630 17603815 -225060538 - MIR SINE MIR -37 225 3 543 267 109 50 chr1 17604962 17605284 -225059069 + MLT1K LTR MaLR 71 411 -177 404 50 0 17 chr1 17605876 17605936 -225058417 + (CA)n Simple_repeat Simple_repeat 2 60 0 183 364 0 0 chr1 17606902 17606968 -225057385 + MIR SINE MIR 106 171 -91 644 283 47 5 chr1 17608484 17608675 -225055678 + MIR SINE MIR 27 225 -37 191 280 65 65 chr1 17609035 17609142 -225055211 + MIR3 SINE MIR 82 188 -20 196 233 0 0 chr1 17609279 17609322 -225055031 + MER5A DNA MER1_type 60 102 -87 194 252 26 0 chr1 17609954 17610017 -225054336 - MIR SINE MIR -60 148 106 1941 125 41 0 chr1 17610051 17610346 -225054007 - AluJb SINE Alu 0 312 6 263 283 244 25 chr1 17611575 17611858 -225052495 + L2 LINE L2 2878 3222 -50 252 233 100 33 chr1 17611914 17612004 -225052349 - MIR SINE MIR -72 190 95 981 104 8 0 chr1 17612014 17612148 -225052205 + AluSx SINE Alu 1 135 -177 2048 123 10 0 chr1 17612148 17612448 -225051905 + AluSx SINE Alu 1 303 -9 2063 110 19 19 chr1 17612448 17612804 -225051549 + AluSg SINE Alu 1 358 0 1029 139 15 69 chr1 17612804 17613006 -225051347 + AluSx SINE Alu 120 310 0 2154 95 0 16 chr1 17613028 17613334 -225051019 + AluSx SINE Alu 1 301 -11 194 277 0 0 chr1 17613354 17613401 -225050952 - MIR SINE MIR -181 81 35 185 333 226 0 chr1 17613649 17613808 -225050545 + L2 LINE L2 2753 2947 -367 2211 114 0 3 chr1 17613923 17614229 -225050124 - AluSq SINE Alu -8 305 1 478 165 0 0 chr1 17614229 17614314 -225050039 - L1MB4 LINE L1 -40 6140 6056 424 116 0 0 chr1 17614322 17614391 -225049962 + AluSq/x SINE Alu 63 131 -172 204 97 0 0 chr1 17614391 17614422 -225049931 + (TA)n Simple_repeat Simple_repeat 2 32 0 782 144 0 0 chr1 17614456 17614567 -225049786 + AluSx SINE Alu 2 112 -201 2329 54 40 7 chr1 17614567 17614865 -225049488 - AluYa5 SINE Alu -3 308 1 1499 100 0 9 chr1 17614866 17615076 -225049277 + AluSx SINE Alu 101 308 -2 304 253 11 0 chr1 17615076 17615167 -225049186 - MER2 DNA MER2_type -138 207 116 1434 189 63 28 chr1 17615240 17615526 -225048827 + AluJb SINE Alu 6 301 -11 1388 126 19 0 chr1 17615559 17615766 -225048587 + AluJo SINE Alu 1 211 -101 225 0 0 0 chr1 17615898 17615923 -225048430 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 655 210 146 36 chr1 17616609 17616828 -225047525 - MIR SINE MIR 0 262 20 2149 118 3 10 chr1 17616830 17617144 -225047209 - AluSx SINE Alu 0 312 1 230 54 0 27 chr1 17617144 17617181 -225047172 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 445 148 0 125 chr1 17617184 17617312 -225047041 - LTR53 LTR ERVL -100 419 308 207 213 21 0 chr1 17617337 17617384 -225046969 - MIR SINE MIR -213 49 2 236 282 32 40 chr1 17617604 17617726 -225046627 - MIR SINE MIR -75 133 29 393 234 78 106 chr1 17617732 17617809 -225046544 + MIR SINE MIR 72 145 -117 2184 103 0 3 chr1 17617809 17618110 -225046243 + AluSx SINE Alu 5 304 -8 393 234 78 106 chr1 17618110 17618173 -225046180 + MIR SINE MIR 145 208 -54 869 250 10 10 chr1 17618880 17619088 -225045265 - MIR SINE MIR -10 252 45 28 48 0 0 chr1 17619337 17619379 -225044974 + AT_rich Low_complexity Low_complexity 1 42 0 2332 96 0 6 chr1 17619384 17619698 -225044655 + AluSq SINE Alu 1 312 -1 1791 166 3 0 chr1 17619714 17620003 -225044350 - AluJo SINE Alu -22 290 1 953 110 0 7 chr1 17620003 17620139 -225044214 - AluJb SINE Alu -177 135 1 217 254 0 84 chr1 17620223 17620294 -225044059 + L2 LINE L2 3200 3264 -8 1515 229 14 40 chr1 17620311 17620661 -225043692 + MER58B DNA MER1_type 1 341 0 263 283 11 33 chr1 17620848 17620940 -225043413 - MIR3 SINE MIR -41 167 78 449 259 38 8 chr1 17623109 17623240 -225041113 - MIR SINE MIR -68 194 60 322 267 224 6 chr1 17623432 17623602 -225040751 - MIR3 SINE MIR -12 250 45 208 305 37 0 chr1 17624054 17624136 -225040217 - L2 LINE L2 -263 3009 2925 399 295 15 95 chr1 17624580 17624627 -225039726 - MER91B DNA MER1_type -6 184 135 2066 111 3 3 chr1 17624627 17624925 -225039428 - AluY SINE Alu -13 298 1 399 295 15 95 chr1 17624925 17624953 -225039400 - MER91B DNA MER1_type -55 135 106 2151 102 10 0 chr1 17624953 17625248 -225039105 + AluSg SINE Alu 12 309 -1 399 295 15 95 chr1 17625248 17625371 -225038982 - MER91B DNA MER1_type -84 106 1 532 315 123 14 chr1 17625433 17625652 -225038701 - MIR SINE MIR -3 259 17 187 167 0 0 chr1 17625817 17625847 -225038506 - MER5A DNA MER1_type -105 84 55 217 233 12 4 chr1 17626295 17626361 -225037992 + MIR SINE MIR 77 145 -63 2112 109 7 3 chr1 17626471 17626764 -225037589 + AluSq SINE Alu 1 294 -19 2073 123 3 0 chr1 17626766 17627058 -225037295 + AluSq SINE Alu 1 293 -20 2225 109 3 0 chr1 17627060 17627364 -225036989 + AluSp SINE Alu 1 305 -8 549 256 62 12 chr1 17627375 17627535 -225036818 - MIR SINE MIR -17 245 78 487 297 52 24 chr1 17627917 17628129 -225036224 - MIR SINE MIR -35 227 10 268 304 25 0 chr1 17628890 17628969 -225035384 + MIR SINE MIR 41 121 -87 2003 129 33 0 chr1 17629000 17629302 -225035051 + AluSx SINE Alu 1 312 0 2067 88 29 0 chr1 17629610 17629934 -225034419 - AluSx SINE Alu 0 332 1 440 246 66 0 chr1 17629936 17630058 -225034295 - MIR SINE MIR -117 145 16 275 253 0 24 chr1 17630566 17630649 -225033704 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 335 227 94 0 chr1 17631820 17631882 -225032471 + MIR SINE MIR 104 159 -103 2187 108 0 0 chr1 17631882 17632178 -225032175 - AluSx SINE Alu -16 296 1 335 227 94 0 chr1 17632178 17632228 -225032125 + MIR SINE MIR 159 231 -31 837 263 81 0 chr1 17632315 17632551 -225031802 + MIR SINE MIR 8 262 0 204 250 0 0 chr1 17632572 17632620 -225031733 + (TTA)n Simple_repeat Simple_repeat 3 50 0 289 303 64 18 chr1 17632621 17632730 -225031623 + MIR SINE MIR 58 171 -91 196 235 113 43 chr1 17633060 17633175 -225031178 + L2 LINE L2 2942 3064 -208 2326 80 0 3 chr1 17633569 17633871 -225030482 - AluY SINE Alu -8 303 3 2145 95 7 0 chr1 17633874 17634168 -225030185 - AluSx SINE Alu -16 296 1 1013 105 0 0 chr1 17634172 17634305 -225030048 - AluSq/x SINE Alu -179 133 1 273 362 0 0 chr1 17634521 17634615 -225029738 + MIR SINE MIR 165 258 -4 1768 160 45 0 chr1 17634832 17635120 -225029233 + AluJb SINE Alu 2 302 -10 868 152 0 0 chr1 17635127 17635252 -225029101 + FLAM_C SINE Alu 1 125 -8 320 202 293 0 chr1 17635275 17635374 -225028979 + MER3 DNA MER1_type 2 129 -80 2354 75 0 13 chr1 17635374 17635681 -225028672 - AluY SINE Alu -7 304 2 1503 126 0 0 chr1 17635682 17635897 -225028456 - AluSg/x SINE Alu -8 304 90 29 0 0 0 chr1 17635938 17635967 -225028386 + AT_rich Low_complexity Low_complexity 1 29 0 823 156 0 7 chr1 17635968 17636103 -225028250 + AluJo SINE Alu 1 134 -178 2369 110 0 0 chr1 17836157 17836466 -224827887 + AluSx SINE Alu 1 309 -3 1818 70 0 0 chr1 17837101 17837315 -224827038 + AluSq SINE Alu 92 305 -8 1057 79 0 0 chr1 17837315 17837442 -224826911 + AluSq SINE Alu 134 260 -53 2692 44 0 63 chr1 17837477 17837842 -224826511 + LTR14A LTR ERVK 3 344 0 1773 129 20 17 chr1 17837848 17838142 -224826211 + MSTA LTR MaLR 134 428 0 775 202 14 62 chr1 17838143 17838351 -224826002 + L1M4 LINE L1 4724 4921 -1225 525 222 32 48 chr1 17838380 17838506 -224825847 - L2 LINE L2 -2 3311 3188 2028 102 0 0 chr1 17838996 17839252 -224825101 - AluSx SINE Alu -1 311 56 397 281 97 77 chr1 17839412 17839608 -224824745 + MIR SINE MIR 4 203 -59 229 201 253 71 chr1 17839683 17839837 -224824516 + MIR SINE MIR 80 261 -1 250 259 0 0 chr1 17839880 17839938 -224824415 + L2 LINE L2 3251 3308 -5 537 289 26 30 chr1 17841129 17841330 -224823023 - MIR SINE MIR -32 230 31 406 240 164 41 chr1 17841334 17841480 -224822873 - MER5B DNA MER1_type 0 178 15 1944 108 4 22 chr1 17841486 17841590 -224822763 + AluSx SINE Alu 32 136 -176 2375 86 0 3 chr1 17841590 17841881 -224822472 + AluSc SINE Alu 1 290 -19 1944 108 4 22 chr1 17841881 17842053 -224822300 + AluSx SINE Alu 136 303 -9 2475 92 0 0 chr1 17842372 17842676 -224821677 + AluY SINE Alu 1 304 -7 470 252 33 133 chr1 17842844 17843021 -224821332 - L1ME3A LINE L1 -208 5962 5838 1995 157 7 0 chr1 17843021 17843320 -224821033 - AluJb SINE Alu -11 301 1 470 252 33 133 chr1 17843320 17843503 -224820850 - L1ME3A LINE L1 -332 5838 5638 975 236 30 93 chr1 17843583 17843981 -224820372 - MLT1J1 LTR MaLR -11 435 63 838 275 28 14 chr1 17844643 17844861 -224819492 + MIR SINE MIR 8 228 -34 2200 114 0 3 chr1 17845062 17845361 -224818992 + AluSc SINE Alu 3 300 -9 1598 109 5 0 chr1 17846194 17846404 -224817949 + AluSq SINE Alu 1 211 -102 198 0 0 0 chr1 17846417 17846439 -224817914 + (TAA)n Simple_repeat Simple_repeat 2 23 0 280 136 0 0 chr1 17846680 17846724 -224817629 - U2 snRNA snRNA -141 47 4 324 211 312 0 chr1 17846762 17846871 -224817482 + MIR SINE MIR 114 256 -6 318 343 10 0 chr1 17846967 17847066 -224817287 - L2 LINE L2 -31 3282 3183 770 244 79 54 chr1 17847179 17847498 -224816855 + L1ME3A LINE L1 3670 3980 -2166 2169 137 0 0 chr1 17847498 17847791 -224816562 + AluSx SINE Alu 1 293 -19 1012 155 16 42 chr1 17847799 17847992 -224816361 + MER5A DNA MER1_type 2 189 0 770 244 79 54 chr1 17847992 17848248 -224816105 + L1ME3A LINE L1 3986 4234 -1912 1706 183 3 36 chr1 17848248 17848554 -224815799 - AluJo SINE Alu -16 296 1 770 244 79 54 chr1 17848554 17848826 -224815527 + L1ME3A LINE L1 4234 4607 -1539 267 31 0 0 chr1 17849003 17849035 -224815318 + (GGGAA)n Simple_repeat Simple_repeat 1 32 0 551 269 50 0 chr1 17849037 17849219 -224815134 + L1ME3A LINE L1 4627 4817 -1329 313 262 0 79 chr1 17849229 17849393 -224814960 - L1M4 LINE L1 -847 5299 5149 31 26 0 0 chr1 17849393 17849431 -224814922 + AT_rich Low_complexity Low_complexity 1 38 0 1092 264 81 20 chr1 17849526 17849959 -224814394 + L1ME3A LINE L1 5352 5815 -355 386 159 0 0 chr1 17849980 17850043 -224814310 - LTR3b LTR ERVK 0 500 438 1780 198 42 53 chr1 17850043 17850477 -224813876 - LTR3 LTR ERVK 0 429 1 501 164 45 0 chr1 17850477 17850587 -224813766 + L1ME3A LINE L1 5837 5951 -219 1521 166 21 32 chr1 17850611 17850895 -224813458 + AluJo SINE Alu 26 306 -6 2507 51 0 7 chr1 17850991 17851286 -224813067 + AluY SINE Alu 11 303 -8 1576 214 84 3 chr1 17852000 17852392 -224811961 + LTR16C LTR ERVL 66 489 -2 236 338 35 50 chr1 17852408 17852580 -224811773 + MIR SINE MIR 23 191 -63 1798 174 22 42 chr1 17852620 17853021 -224811332 + MLT2D LTR ERVL 2 477 -43 492 48 0 0 chr1 17853021 17853084 -224811269 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1798 174 22 42 chr1 17853084 17853109 -224811244 + MLT2D LTR ERVL 477 501 -19 218 250 29 59 chr1 17853109 17853177 -224811176 + L2 LINE L2 3203 3268 -4 546 278 73 21 chr1 17853230 17853409 -224810944 + MIR SINE MIR 2 193 -69 2373 88 3 0 chr1 17853409 17853704 -224810649 + AluSx SINE Alu 1 296 -16 546 278 73 21 chr1 17853704 17853715 -224810638 + MIR SINE MIR 193 202 -60 255 31 0 0 chr1 17854848 17854880 -224809473 + (TG)n Simple_repeat Simple_repeat 2 33 0 2111 242 164 42 chr1 17854927 17856017 -224808336 + L2 LINE L2 2074 3312 -1 625 279 23 6 chr1 17856102 17856274 -224808079 + MIR3 SINE MIR 15 189 -19 347 361 24 6 chr1 17856422 17856588 -224807765 + MIR SINE MIR 15 183 -79 413 219 42 85 chr1 17856944 17857144 -224807209 + MIR SINE MIR 21 210 -51 589 218 148 0 chr1 17857177 17857319 -224807034 + MIR SINE MIR 30 192 -70 233 301 96 0 chr1 17857319 17857402 -224806951 + MIR SINE MIR 143 233 -29 320 293 20 20 chr1 17858280 17858379 -224805974 - MIR SINE MIR -77 131 33 475 277 144 5 chr1 17858476 17858671 -224805682 + MIR SINE MIR 41 262 0 225 228 70 18 chr1 17858668 17858725 -224805628 - L2 LINE L2 0 3272 3213 * 2929 134 24 24 chr1 17858777 17859270 -224805083 + LTR15 LTR ERV1 1 493 0 779 233 17 22 chr1 17859834 17860014 -224804339 - MIR SINE MIR -56 206 28 674 140 0 0 chr1 17860229 17860329 -224804024 + AluSg/x SINE Alu 199 298 -11 2052 132 0 33 chr1 17860364 17860506 -224803847 + AluSx SINE Alu 1 146 -166 2323 89 0 3 chr1 17860506 17860799 -224803554 + AluSc SINE Alu 5 296 -13 2052 132 0 33 chr1 17860799 17860960 -224803393 + AluSx SINE Alu 146 294 -18 2450 66 0 10 chr1 17861205 17861510 -224802843 - AluY SINE Alu -9 302 1 417 297 39 0 chr1 17861549 17861677 -224802676 + MIR SINE MIR 87 219 -43 575 205 48 24 chr1 17861692 17861858 -224802495 - MER4C LTR ERV1 0 465 296 2513 86 0 0 chr1 17861863 17862166 -224802187 + AluSq SINE Alu 1 303 -10 1884 97 13 203 chr1 17862203 17862596 -224801757 - MER4A LTR ERV1 -238 426 -40 2314 102 0 3 chr1 17862596 17862901 -224801452 + AluSc SINE Alu 1 304 -5 2355 107 7 3 chr1 17862904 17863212 -224801141 + AluSx SINE Alu 1 309 -3 1884 97 13 203 chr1 17863212 17863340 -224801013 - MER4A LTR ERV1 -512 152 1 199 216 206 41 chr1 17863634 17863731 -224800622 + MIR SINE MIR 22 134 -128 420 283 62 23 chr1 17864198 17864375 -224799978 - MIR SINE MIR -12 250 67 283 200 29 0 chr1 17864913 17864983 -224799370 + (TGAG)n Simple_repeat Simple_repeat 3 74 0 252 211 0 0 chr1 17864994 17865046 -224799307 + L2 LINE L2 3220 3271 -1 2196 132 0 0 chr1 17865797 17866092 -224798261 + AluSx SINE Alu 1 295 -17 2434 53 0 3 chr1 17866093 17866437 -224797916 + AluY SINE Alu 1 343 0 274 210 91 119 chr1 17866561 17866704 -224797649 + MIR SINE MIR 117 255 -7 328 280 13 0 chr1 17866713 17866788 -224797565 + MIR SINE MIR 109 184 -78 822 167 0 0 chr1 17866791 17866911 -224797442 - FLAM_C SINE Alu -23 120 1 2245 78 0 11 chr1 17866973 17867254 -224797099 - AluSg SINE Alu -32 278 1 1142 150 5 60 chr1 17867360 17867425 -224796928 - MER5A DNA MER1_type 0 189 122 1764 157 48 10 chr1 17867425 17867719 -224796634 + AluJo SINE Alu 2 306 -6 1142 150 5 60 chr1 17867719 17867853 -224796500 - MER5A DNA MER1_type -67 122 1 348 260 122 0 chr1 17867958 17868081 -224796272 + MIR SINE MIR 60 197 -65 2565 62 0 10 chr1 17868367 17868673 -224795680 - AluY SINE Alu -8 303 1 704 142 117 0 chr1 17868673 17868793 -224795560 - FLAM_C SINE Alu -8 135 2 1309 178 17 26 chr1 17868974 17869205 -224795148 + AluJb SINE Alu 6 234 -78 2725 131 59 27 chr1 17869244 17869261 -224795092 - MLT1D LTR MaLR 0 505 490 2310 159 15 15 chr1 17869261 17869664 -224794689 - MER57A LTR ERV1 0 403 1 2725 131 59 27 chr1 17869664 17869965 -224794388 - MLT1D LTR MaLR -15 490 163 4711 105 9 0 chr1 17869965 17870594 -224793759 - MER41B LTR ERV1 0 635 1 2725 131 59 27 chr1 17870594 17870763 -224793590 - MLT1D LTR MaLR -342 163 1 651 227 67 0 chr1 17871077 17871227 -224793126 + MIR SINE MIR 77 236 -26 454 229 169 30 chr1 17871422 17871588 -224792765 - MER4C LTR ERV1 0 465 277 1799 92 14 134 chr1 17871604 17871891 -224792462 - MER4A LTR ERV1 -239 425 261 2260 106 0 20 chr1 17871891 17872193 -224792160 + AluSx SINE Alu 1 296 -16 1799 92 14 134 chr1 17872193 17872427 -224791926 - MER4A LTR ERV1 -403 261 1 275 191 16 0 chr1 17872471 17872534 -224791819 + CT-rich Low_complexity Low_complexity 4 67 0 2108 223 79 39 chr1 17872566 17873136 -224791217 - MLT1E LTR MaLR 0 593 1 1672 206 20 0 chr1 17873238 17873544 -224790809 + AluJb SINE Alu 1 312 0 462 286 92 24 chr1 17873633 17874161 -224790192 - L1ME LINE L1 -372 5867 5222 823 138 8 39 chr1 17874187 17874317 -224790036 - FLAM_C SINE Alu -17 126 1 727 271 78 98 chr1 17874393 17875400 -224788953 - L1ME LINE L1 -1078 5137 4151 2048 142 17 0 chr1 17875400 17875689 -224788664 - AluSx SINE Alu -18 294 1 727 271 78 98 chr1 17875689 17875776 -224788577 - L1ME LINE L1 -2064 4151 4064 1276 246 102 68 chr1 17875837 17876590 -224787763 - L1MEc LINE L1 -2882 3333 2608 1726 161 30 33 chr1 17876590 17876889 -224787464 - AluJb SINE Alu -14 298 1 1276 246 102 68 chr1 17876889 17877214 -224787139 - L1MEc LINE L1 -3607 2608 2242 2016 131 0 20 chr1 17877214 17877511 -224786842 - AluSx SINE Alu -1 311 21 1276 246 102 68 chr1 17877511 17877608 -224786745 - L1MEc LINE L1 -3973 2242 2150 1751 173 0 32 chr1 17877697 17878009 -224786344 - AluJo SINE Alu -10 302 1 2050 154 0 3 chr1 17878049 17878348 -224786005 + AluJo SINE Alu 1 298 -14 206 220 9 37 chr1 17878660 17878769 -224785584 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 287 294 0 0 chr1 17878835 17878903 -224785450 - Tigger2a DNA MER2_type 0 434 367 973 66 16 0 chr1 17878903 17879025 -224785328 + AluY SINE Alu 174 297 -14 2302 92 59 3 chr1 17879029 17879387 -224784966 - Tigger2a DNA MER2_type -55 379 2 283 333 26 20 chr1 17879387 17879582 -224784771 - HAL1 LINE L1 -937 1570 1375 387 235 91 15 chr1 17879606 17879738 -224784615 - L1MEc LINE L1 -5975 230 89 2102 198 59 71 chr1 17880013 17880574 -224783779 - MLT2B3 LTR ERVL 0 554 1 481 288 42 63 chr1 17881043 17881234 -224783119 - L2 LINE L2 -5 3308 3122 2472 79 3 0 chr1 17881321 17881624 -224782729 + AluSq SINE Alu 1 304 -9 1114 211 149 53 chr1 17881636 17881935 -224782418 - MLT1D LTR MaLR -48 457 105 2357 90 0 13 chr1 17881935 17882235 -224782118 - AluSx SINE Alu -16 296 1 1114 211 149 53 chr1 17882235 17882352 -224782001 - MLT1D LTR MaLR -400 105 1 376 345 18 23 chr1 17882751 17882922 -224781431 - L2 LINE L2 -556 2758 2589 312 283 105 56 chr1 17883293 17883597 -224780756 + L2 LINE L2 2952 3270 -2 2292 105 0 0 chr1 17883993 17884288 -224780065 - AluSx SINE Alu -17 295 1 328 217 25 25 chr1 17884364 17884484 -224779869 + MER113 DNA MER1_type? 2 121 -400 206 176 29 59 chr1 17884520 17884545 -224779808 + (TA)n Simple_repeat Simple_repeat 1 25 -41 1924 146 28 3 chr1 17884545 17884833 -224779520 + AluJo SINE Alu 1 295 -17 206 176 29 59 chr1 17884833 17884875 -224779478 + (TA)n Simple_repeat Simple_repeat 25 66 0 838 160 111 28 chr1 17884941 17885122 -224779231 - MIR SINE MIR -21 241 46 349 43 0 0 chr1 17886811 17886857 -224777496 + (TTTA)n Simple_repeat Simple_repeat 3 168 0 2083 102 29 0 chr1 17886857 17887131 -224777222 - AluSx SINE Alu -30 282 1 2343 102 3 0 chr1 17887321 17887625 -224776728 + AluSc SINE Alu 1 305 -4 323 259 35 63 chr1 17887966 17888109 -224776244 - MIR3 SINE MIR -67 141 3 456 301 169 0 chr1 17888206 17888372 -224775981 - MIR SINE MIR -27 235 42 482 293 39 33 chr1 17888642 17888823 -224775530 - MIR SINE MIR 0 262 81 197 322 0 0 chr1 17888990 17889049 -224775304 - L2 LINE L2 0 3272 3214 285 266 124 18 chr1 17889571 17889684 -224774669 - L2 LINE L2 -14 3299 3175 285 98 0 0 chr1 17889724 17889765 -224774588 + (CA)n Simple_repeat Simple_repeat 1 41 0 1090 268 50 17 chr1 17889888 17890415 -224773938 - L2 LINE L2 -36 3277 2736 1932 142 30 0 chr1 17890476 17890779 -224773574 - AluSx SINE Alu 0 312 1 2157 103 0 7 chr1 17890783 17891084 -224773269 - AluSc SINE Alu -10 299 1 209 309 117 0 chr1 17891272 17891366 -224772987 + L2 LINE L2 3168 3272 0 214 328 74 74 chr1 17892301 17892378 -224771975 + MER5A DNA MER1_type 1 77 -112 2134 105 3 3 chr1 17892378 17892673 -224771680 + AluSx SINE Alu 1 295 -17 1623 99 0 5 chr1 17892672 17892895 -224771458 + AluSg/x SINE Alu 84 305 -7 * 214 328 74 74 chr1 17892673 17892899 -224771454 + MER5A DNA MER1_type 77 85 -104 278 25 0 25 chr1 17892899 17892939 -224771414 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 214 328 74 74 chr1 17892939 17893045 -224771308 + MER5A DNA MER1_type 84 189 0 191 294 90 40 chr1 17893129 17893231 -224771122 + MIR SINE MIR 23 118 -144 2405 101 32 9 chr1 17893231 17893578 -224770775 + THE1A LTR MaLR 1 355 0 12642 77 5 2 chr1 17893578 17895154 -224769199 + THE1A-int LTR MaLR 1 1580 0 2458 81 32 9 chr1 17895154 17895501 -224768852 + THE1A LTR MaLR 1 355 0 191 294 90 40 chr1 17895501 17895578 -224768775 + MIR SINE MIR 117 210 -52 2078 103 34 0 chr1 17896630 17896922 -224767431 - AluSp SINE Alu -11 302 1 369 221 13 0 chr1 17896944 17897021 -224767332 + MER116 DNA Mariner 3 80 0 396 301 52 0 chr1 17898289 17898442 -224765911 - MIR SINE MIR 0 262 102 2165 119 7 0 chr1 17899108 17899418 -224764935 + AluSx SINE Alu 1 312 0 659 296 33 0 chr1 17899485 17899725 -224764628 + L2 LINE L2 2807 3054 -259 784 272 64 11 chr1 17899943 17900226 -224764127 + MER113 DNA MER1_type? 138 435 -86 1094 244 15 112 chr1 17900395 17900591 -224763762 - L2 LINE L2 -3 3310 3097 1782 170 3 35 chr1 17900591 17900908 -224763445 + AluJo SINE Alu 2 308 -4 1094 244 15 112 chr1 17900908 17900994 -224763359 - L2 LINE L2 -216 3097 3004 1673 156 3 61 chr1 17900994 17901320 -224763033 + AluJb SINE Alu 1 307 -5 1094 244 15 112 chr1 17901320 17901574 -224762779 - L2 LINE L2 -309 3004 2825 390 262 14 34 chr1 17901621 17901925 -224762428 + G-rich Low_complexity Low_complexity 1 297 0 586 287 244 32 chr1 17901941 17902840 -224761513 - L2 LINE L2 -419 2895 1807 1225 150 21 47 chr1 17902867 17903101 -224761252 + AluJo SINE Alu 1 228 -84 910 176 104 24 chr1 17903283 17903643 -224760710 + MLT1D LTR MaLR 2 446 -59 1784 127 23 33 chr1 17903643 17903942 -224760411 + AluSx SINE Alu 1 296 -16 225 309 29 0 chr1 17904511 17904579 -224759774 + MIR SINE MIR 8 77 -185 742 257 228 5 chr1 17904581 17904954 -224759399 - L2 LINE L2 -2 3311 2856 2080 95 46 0 chr1 17904955 17905240 -224759113 + AluSx SINE Alu 1 298 -14 279 248 133 29 chr1 17905275 17905380 -224758973 - MIR SINE MIR -122 140 25 541 278 122 50 chr1 17906219 17906597 -224757756 - L2 LINE L2 -2 3270 2866 2080 116 0 3 chr1 17906859 17907152 -224757201 - AluSg SINE Alu -18 292 1 2277 95 0 0 chr1 17907336 17907641 -224756712 + AluSg SINE Alu 1 305 -5 2243 104 0 0 chr1 17907651 17907948 -224756405 + AluSx SINE Alu 1 297 -15 26 23 0 23 chr1 17907954 17907971 -224756382 + AT_rich Low_complexity Low_complexity 1 17 -26 2485 39 7 3 chr1 17907971 17908281 -224756072 + AluY SINE Alu 1 311 0 26 23 0 23 chr1 17908281 17908307 -224756046 + AT_rich Low_complexity Low_complexity 17 43 0 257 284 87 24 chr1 17908317 17908444 -224755909 - MIR SINE MIR -9 253 119 203 250 13 26 chr1 17908886 17908962 -224755391 + C-rich Low_complexity Low_complexity 3 77 0 4218 145 49 20 chr1 17909216 17909693 -224754660 - LTR62 LTR ERVK -2 717 212 1973 148 0 3 chr1 17909693 17909996 -224754357 + AluSx SINE Alu 1 302 -10 4218 145 49 20 chr1 17909996 17910215 -224754138 - LTR62 LTR ERVK -507 212 1 182 255 0 0 chr1 17910466 17910517 -224753836 - L2 LINE L2 -234 3079 3029 493 284 142 5 chr1 17911250 17911440 -224752913 - MIR SINE MIR -19 243 28 297 267 0 27 chr1 17911544 17911619 -224752734 - L2 LINE L2 0 3313 3241 221 322 53 33 chr1 17911609 17911761 -224752592 - L2 LINE L2 -181 3091 2937 * 1542 194 23 37 chr1 17911762 17911781 -224752572 + L1PB4 LINE L1 5811 5829 -327 1702 122 93 0 chr1 17911781 17912060 -224752293 + AluJb SINE Alu 1 305 -7 1542 194 23 37 chr1 17912060 17912391 -224751962 + L1PB4 LINE L1 5829 6156 0 322 309 36 9 chr1 17912392 17912502 -224751851 + MIR SINE MIR 34 146 -62 2073 108 34 0 chr1 17912505 17912801 -224751552 - AluSx SINE Alu -5 307 2 1945 116 0 40 chr1 17912803 17913106 -224751247 - AluJb SINE Alu -19 293 3 536 197 41 0 chr1 17914253 17914375 -224749978 + L1MB2 LINE L1 4718 4844 -1302 * 2458 103 210 138 chr1 17914365 17914686 -224749667 + L1MB2 LINE L1 5334 5631 -540 480 221 0 0 chr1 17914686 17914772 -224749581 - FLAM SINE Alu -12 131 46 2458 103 210 138 chr1 17914772 17914810 -224749543 + L1MB2 LINE L1 5631 5665 -506 1443 200 41 10 chr1 17914810 17914931 -224749422 + AluJo SINE Alu 1 117 -195 209 56 0 28 chr1 17914931 17914967 -224749386 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1443 200 41 10 chr1 17914967 17915135 -224749218 + AluJo SINE Alu 117 299 -13 2458 103 210 138 chr1 17915135 17915271 -224749082 + L1MB2 LINE L1 5665 5790 -381 1975 137 0 7 chr1 17915271 17915570 -224748783 + AluSx SINE Alu 1 297 -15 2458 103 210 138 chr1 17915570 17915731 -224748622 + L1MB2 LINE L1 5790 6130 -41 2204 100 3 0 chr1 17915731 17916030 -224748323 + AluSx SINE Alu 1 300 -12 1406 222 124 46 chr1 17916563 17917022 -224747331 - MLT1D LTR MaLR -6 499 5 716 293 111 22 chr1 17917186 17917599 -224746754 - LTR16A LTR ERVL 0 450 1 1663 174 72 20 chr1 17917741 17917922 -224746431 - LTR38B LTR ERV1 0 611 441 2438 87 0 0 chr1 17917922 17918234 -224746119 + AluSx SINE Alu 1 312 0 1663 174 72 20 chr1 17918234 17918441 -224745912 - LTR38B LTR ERV1 -170 441 208 180 0 0 0 chr1 17918448 17918468 -224745885 + (CAT)n Simple_repeat Simple_repeat 2 21 0 871 134 0 0 chr1 17918468 17918587 -224745766 - FLAM_C SINE Alu -190 122 1 1291 101 19 0 chr1 17918587 17918796 -224745557 - LTR38B LTR ERV1 -397 213 1 2096 121 10 0 chr1 17918850 17919157 -224745196 - AluSx SINE Alu -2 310 1 307 241 24 24 chr1 17919199 17919282 -224745071 - L2 LINE L2 -2 3270 3188 377 294 27 54 chr1 17919858 17920042 -224744311 + L1MC4a LINE L1 5770 5948 -1860 902 133 75 6 chr1 17920181 17920354 -224743999 + LTR38B LTR ERV1 1 185 -425 1272 160 14 14 chr1 17920550 17920769 -224743584 + AluJo SINE Alu 85 303 -9 232 283 225 17 chr1 17920978 17921098 -224743255 + MER5A DNA MER1_type 43 187 -2 1714 151 40 0 chr1 17921108 17921386 -224742967 + AluJb SINE Alu 4 292 -20 186 43 0 0 chr1 17922075 17922098 -224742255 + (CAGG)n Simple_repeat Simple_repeat 3 25 0 184 255 82 102 chr1 17922222 17922320 -224742033 + MIR SINE MIR 51 146 -116 270 321 134 0 chr1 17923026 17923160 -224741193 - MIR SINE MIR -54 208 57 2024 127 23 3 chr1 17923170 17923477 -224740876 - AluSq SINE Alu 0 313 1 288 276 48 29 chr1 17923477 17923577 -224740776 - MIR SINE MIR -115 147 46 495 233 50 78 chr1 17923673 17923853 -224740500 + MER5B DNA MER1_type 1 175 -3 2077 124 0 0 chr1 17924029 17924319 -224740034 + AluSq SINE Alu 1 290 -23 189 246 53 18 chr1 17924756 17924813 -224739540 + MIR SINE MIR 4 62 -200 248 286 197 37 chr1 17925323 17925648 -224738705 + L2 LINE L2 1303 1679 -1635 2086 118 10 0 chr1 17925661 17925958 -224738395 - AluSg SINE Alu -10 300 1 1538 79 0 252 chr1 17925990 17926383 -224737970 - AluY SINE Alu -17 294 1 604 213 103 45 chr1 17926539 17926722 -224737631 - FRAM SINE Alu 0 166 2 1094 112 10 76 chr1 17926765 17926962 -224737391 - AluJb SINE Alu -117 195 12 746 316 186 29 chr1 17927159 17928043 -224736310 + L2 LINE L2 2254 3283 -30 2034 144 0 0 chr1 17928284 17928590 -224735763 - AluSx SINE Alu -6 306 1 1558 167 7 59 chr1 17928633 17928797 -224735556 - AluSx SINE Alu -22 290 148 2479 26 7 7 chr1 17928797 17929099 -224735254 - AluY SINE Alu -9 302 1 1558 167 7 59 chr1 17929099 17929240 -224735113 - AluSx SINE Alu -164 148 1 1081 143 0 53 chr1 17929873 17930062 -224734291 - AluSg/x SINE Alu 0 312 134 1934 93 0 15 chr1 17930062 17930331 -224734022 - AluY SINE Alu -21 290 26 292 248 58 51 chr1 17931069 17931206 -224733147 + MIR SINE MIR 74 211 -51 204 354 49 0 chr1 17931944 17932026 -224732327 + MIR SINE MIR 62 147 -61 1541 180 26 26 chr1 17932457 17932768 -224731585 - AluJo SINE Alu -1 311 1 1774 95 40 8 chr1 17933251 17933503 -224730850 + AluSq SINE Alu 1 260 -53 24 0 0 0 chr1 17933511 17933535 -224730818 + AT_rich Low_complexity Low_complexity 1 24 0 1765 146 27 14 chr1 17933553 17933847 -224730506 + AluSx SINE Alu 1 298 -14 356 173 27 40 chr1 17933850 17933925 -224730428 + MER5A DNA MER1_type 114 187 -2 778 184 0 0 chr1 17933998 17934123 -224730230 + FLAM_C SINE Alu 2 126 -17 1539 149 15 11 chr1 17934143 17934405 -224729948 + AluSq SINE Alu 1 263 -50 183 264 91 64 chr1 17934409 17934519 -224729834 - L2 LINE L2 -1324 1990 1878 511 92 0 0 chr1 17934764 17934829 -224729524 + AluJ/FLAM SINE Alu 2 66 -246 478 340 213 11 chr1 17934883 17935584 -224728769 - L2 LINE L2 -2054 1260 419 244 314 85 8 chr1 17935872 17935990 -224728363 + MIR SINE MIR 132 258 -4 1789 174 0 3 chr1 17936847 17937141 -224727212 + AluSx SINE Alu 1 293 -19 1949 104 10 21 chr1 17937152 17937441 -224726912 + AluY SINE Alu 1 286 -25 263 301 169 33 chr1 17939681 17939708 -224724645 - L2 LINE L2 -2822 492 470 2012 112 7 7 chr1 17939708 17940002 -224724351 + AluSq SINE Alu 7 300 -13 2251 87 3 13 chr1 17940004 17940303 -224724050 + AluSx SINE Alu 2 297 -15 263 301 169 33 chr1 17940303 17940455 -224723898 - L2 LINE L2 -2844 470 285 2150 126 0 0 chr1 17940904 17941205 -224723148 - AluSx SINE Alu -11 301 1 808 161 20 20 chr1 17941342 17941491 -224722862 + AluSg/x SINE Alu 125 273 -39 1814 125 42 7 chr1 17942558 17942846 -224721507 + AluSx SINE Alu 1 298 -14 281 364 152 8 chr1 17942940 17943204 -224721149 - L2 LINE L2 -539 2775 2474 1269 129 129 17 chr1 17943220 17943461 -224720892 - AluJb SINE Alu -44 268 1 216 253 53 0 chr1 17943507 17943582 -224720771 - L2 LINE L2 -223 3049 2971 2131 121 16 0 chr1 17944883 17945189 -224719164 - AluSx SINE Alu -1 311 1 2152 122 0 0 chr1 17945790 17946085 -224718268 + AluSx SINE Alu 1 295 -17 381 252 99 9 chr1 17946141 17946252 -224718101 + MER5A DNA MER1_type 9 129 -60 203 286 52 0 chr1 17946346 17946423 -224717930 - MIR SINE MIR -115 147 67 224 378 0 0 chr1 17947730 17947804 -224716549 - MIR SINE MIR -57 151 78 232 350 103 10 chr1 17948127 17948224 -224716129 + MIR SINE MIR 77 182 -80 210 91 0 0 chr1 17948337 17948370 -224715983 + (CCCA)n Simple_repeat Simple_repeat 1 33 0 181 183 127 56 chr1 17948913 17948984 -224715369 + L2 LINE L2 3173 3248 -24 2015 113 14 0 chr1 17949003 17949285 -224715068 + AluSp SINE Alu 1 286 -27 1415 186 42 33 chr1 17949299 17949441 -224714912 + AluJb SINE Alu 1 140 -172 1759 150 23 10 chr1 17949441 17949747 -224714606 + AluSx SINE Alu 1 310 -2 1415 186 42 33 chr1 17949747 17949910 -224714443 + AluJb SINE Alu 140 309 -3 1820 123 26 0 chr1 17949918 17950187 -224714166 + AluSp SINE Alu 1 276 -37 263 271 249 6 chr1 17952848 17953025 -224711328 + Charlie8 DNA MER1_type 57 276 -2141 377 261 72 0 chr1 17953149 17953260 -224711093 + MIR SINE MIR 111 229 -33 1881 125 26 30 chr1 17953338 17953641 -224710712 + AluSx SINE Alu 1 302 -10 1794 126 53 21 chr1 17954260 17954545 -224709808 + AluSx SINE Alu 1 294 -18 2144 85 21 0 chr1 17954948 17955229 -224709124 + AluSx SINE Alu 1 287 -25 1997 101 18 11 chr1 17955234 17955520 -224708833 + AluSg SINE Alu 1 288 -22 26 0 0 0 chr1 17956490 17956516 -224707837 + AT_rich Low_complexity Low_complexity 1 26 0 2140 98 10 23 chr1 17960981 17961287 -224703066 + AluSx SINE Alu 1 302 -10 751 202 0 0 chr1 17962990 17963119 -224701234 + FLAM_A SINE Alu 1 129 -4 868 123 31 0 chr1 17963537 17963667 -224700686 + AluSq/x SINE Alu 1 134 -179 2064 131 3 10 chr1 17963934 17964248 -224700105 + AluSx SINE Alu 1 312 0 1510 177 58 17 chr1 17964312 17964606 -224699747 - AluJb SINE Alu -6 306 1 2117 120 3 0 chr1 17965117 17965426 -224698927 + AluSg SINE Alu 1 310 0 2251 79 10 3 chr1 17965473 17965765 -224698588 + AluSp SINE Alu 1 294 -19 366 267 109 15 chr1 17966510 17966712 -224697641 - MER112 DNA MER1_type -39 221 1 1839 132 3 50 chr1 17967072 17967391 -224696962 + AluSx SINE Alu 1 304 -8 916 157 99 0 chr1 17967618 17967809 -224696544 - MER2 DNA MER2_type -135 210 1 597 84 0 0 chr1 17967895 17967978 -224696375 - Alu SINE Alu -6 303 221 2414 58 0 0 chr1 17968063 17968358 -224695995 + AluSc SINE Alu 1 295 -14 2012 119 0 14 chr1 17968759 17969044 -224695309 + AluSx SINE Alu 1 281 -31 191 319 14 29 chr1 17969294 17969363 -224694990 + MIR SINE MIR 195 262 0 2155 66 28 21 chr1 17970911 17971198 -224693155 + AluSc SINE Alu 3 291 -18 2333 87 3 3 chr1 17971430 17971741 -224692612 + AluSp SINE Alu 1 311 -2 2119 112 20 0 chr1 17976441 17976746 -224687607 - AluSx SINE Alu 0 312 2 299 223 117 11 chr1 17978619 17978713 -224685640 + MIR SINE MIR 45 148 -60 1520 153 104 0 chr1 17979921 17980189 -224684164 + AluJo SINE Alu 1 296 -16 1888 99 0 8 chr1 17980192 17980444 -224683909 + AluSg SINE Alu 1 250 -60 1634 94 54 5 chr1 17980449 17980673 -224683680 - AluSq SINE Alu -47 266 32 2398 71 0 7 chr1 17980737 17981046 -224683307 + AluY SINE Alu 1 307 -4 198 0 0 0 chr1 17981046 17981068 -224683285 + (TA)n Simple_repeat Simple_repeat 2 23 0 797 174 8 0 chr1 17981071 17981203 -224683150 + FLAM_C SINE Alu 1 133 0 2103 90 41 7 chr1 17981502 17981792 -224682561 + AluSq SINE Alu 1 300 -13 1258 97 0 0 chr1 17982498 17982674 -224681679 + AluY SINE Alu 136 311 0 364 357 0 0 chr1 17982678 17982776 -224681577 - L1MC4 LINE L1 -1339 6703 6606 2221 201 116 9 chr1 17983835 17984514 -224679839 + MER21B LTR ERV1 40 814 -49 1888 111 30 0 chr1 17984517 17984788 -224679565 + AluSg SINE Alu 1 279 -31 2069 91 0 4 chr1 17985354 17985629 -224678724 + AluSq SINE Alu 34 307 -6 1759 146 3 24 chr1 17985918 17986213 -224678140 + AluSx SINE Alu 14 302 -10 258 292 31 0 chr1 17986789 17986854 -224677499 + MIR SINE MIR 86 152 -110 26 74 0 0 chr1 17987364 17987418 -224676935 + GC_rich Low_complexity Low_complexity 1 54 0 31 44 0 0 chr1 17987457 17987502 -224676851 + GC_rich Low_complexity Low_complexity 1 45 0 35 92 0 0 chr1 17987637 17987735 -224676618 + GC_rich Low_complexity Low_complexity 1 98 0 24 32 0 0 chr1 17987777 17987808 -224676545 + GC_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr1 17987982 17988022 -224676331 + GC_rich Low_complexity Low_complexity 1 40 0 183 156 0 0 chr1 17988045 17988077 -224676276 + (CTG)n Simple_repeat Simple_repeat 3 34 0 46 33 0 0 chr1 17989427 17989487 -224674866 + GC_rich Low_complexity Low_complexity 1 60 0 249 250 24 0 chr1 17989502 17989586 -224674767 + (CCCCG)n Simple_repeat Simple_repeat 1 86 0 450 319 99 59 chr1 17989996 17990300 -224674053 - L2 LINE L2 -1 3271 2956 1423 199 45 42 chr1 17991867 17992178 -224672175 - AluJb SINE Alu 0 312 1 2085 97 61 0 chr1 17992194 17992473 -224671880 - AluSg SINE Alu -14 296 1 1853 179 0 7 chr1 17992604 17992911 -224671442 - AluJo SINE Alu -7 305 1 320 165 0 110 chr1 17992911 17993002 -224671351 + Charlie5 DNA MER1_type 2503 2583 -29 209 240 40 0 chr1 17993364 17993414 -224670939 + MIR SINE MIR 205 256 -6 275 216 151 86 chr1 17993513 17993554 -224670799 + MER5A DNA MER1_type 35 72 -117 1972 140 0 48 chr1 17993554 17993701 -224670652 + AluJb SINE Alu 1 127 -185 2315 91 7 7 chr1 17993701 17994010 -224670343 + AluSq SINE Alu 1 309 -4 1972 140 0 48 chr1 17994010 17994176 -224670177 + AluJb SINE Alu 127 299 -13 275 216 151 86 chr1 17994176 17994222 -224670131 + MER5A DNA MER1_type 72 114 -75 2458 85 3 3 chr1 17994222 17994529 -224669824 - AluSq SINE Alu -6 307 1 275 216 151 86 chr1 17994529 17994579 -224669774 + MER5A DNA MER1_type 114 182 -7 529 57 38 4 chr1 17994584 17994794 -224669559 + AluSp SINE Alu 1 296 -17 2665 50 0 0 chr1 17994883 17995185 -224669168 + AluY SINE Alu 1 302 -9 259 122 0 0 chr1 17995247 17995288 -224669065 + THE1C LTR MaLR 1 41 -387 2347 74 0 0 chr1 17995288 17995614 -224668739 - AluY SINE Alu 0 326 1 1768 101 29 4 chr1 17995619 17995885 -224668468 - AluSx SINE Alu 0 313 42 1055 110 24 6 chr1 17995885 17996049 -224668304 + THE1C LTR MaLR 209 375 0 2181 104 10 7 chr1 17996468 17996765 -224667588 + AluSc SINE Alu 1 298 -11 2305 106 0 0 chr1 17996898 17997191 -224667162 + AluSx SINE Alu 1 293 -19 483 326 31 31 chr1 17997628 17997732 -224666621 - MIR SINE MIR -17 245 139 2197 125 23 13 chr1 17997732 17998117 -224666236 - MLT1B LTR MaLR -1 389 1 483 326 31 31 chr1 17998117 17998205 -224666148 - MIR SINE MIR -122 140 53 1624 165 86 4 chr1 17998218 17998497 -224665856 - AluJo SINE Alu 0 312 11 2128 118 7 7 chr1 17998504 17998527 -224665826 - AluSp SINE Alu -7 306 284 180 0 0 0 chr1 17998527 17998547 -224665806 + (TG)n Simple_repeat Simple_repeat 1 20 0 2128 118 7 7 chr1 17998547 17998829 -224665524 - AluSp SINE Alu -28 285 1 2367 87 0 0 chr1 17999092 17999430 -224664923 + AluSx SINE Alu 1 338 0 317 219 52 21 chr1 17999452 17999548 -224664805 + U13 snRNA snRNA 4 102 -2 2237 128 0 0 chr1 17999584 17999882 -224664471 + AluSx SINE Alu 10 307 -5 1609 164 22 77 chr1 18000177 18000321 -224664032 + AluJo SINE Alu 1 151 -161 2730 58 0 0 chr1 18000321 18000633 -224663720 + AluSx SINE Alu 1 312 0 1609 164 22 77 chr1 18000633 18000811 -224663542 + AluJo SINE Alu 151 305 -7 2230 104 0 0 chr1 18000944 18001223 -224663130 - AluSg1 SINE Alu -22 287 9 199 254 63 16 chr1 18001286 18001349 -224663004 - MIR3 SINE MIR -52 156 91 2067 134 13 3 chr1 18001816 18002114 -224662239 + AluSx SINE Alu 1 301 -11 2206 104 3 0 chr1 18002116 18002405 -224661948 + AluSg1 SINE Alu 1 290 -19 288 167 17 17 chr1 18002549 18002609 -224661744 - MIR SINE MIR -109 153 94 291 346 15 15 chr1 18002616 18002752 -224661601 + L2 LINE L2 3175 3310 -3 1072 131 5 70 chr1 18002758 18002914 -224661439 + LTR26B LTR ERV1 1 141 -390 2015 133 17 3 chr1 18002914 18003207 -224661146 - AluSx SINE Alu -15 297 1 1072 131 5 70 chr1 18003207 18003264 -224661089 + LTR26B LTR ERV1 141 200 -331 1651 154 10 47 chr1 18003273 18003412 -224660941 + AluSx SINE Alu 5 148 -164 2282 60 14 18 chr1 18003412 18003716 -224660637 + AluY SINE Alu 1 303 0 2392 101 0 0 chr1 18003716 18004023 -224660330 + AluSg SINE Alu 1 307 -3 1961 126 7 17 chr1 18004023 18004317 -224660036 + AluY SINE Alu 1 291 -20 1651 154 10 47 chr1 18004317 18004472 -224659881 + AluSx SINE Alu 145 291 -21 1866 83 38 102 chr1 18004474 18004787 -224659566 + AluSp SINE Alu 1 293 -20 2498 72 7 0 chr1 18004787 18005094 -224659259 + AluSg SINE Alu 1 309 -1 931 170 13 0 chr1 18005094 18005247 -224659106 + LTR26B LTR ERV1 377 531 0 878 150 29 118 chr1 18005433 18005571 -224658782 + MER58 DNA MER1_type 2163 2312 -108 1814 184 7 7 chr1 18005571 18005870 -224658483 + AluSx SINE Alu 2 300 -12 2579 60 0 16 chr1 18005871 18006186 -224658167 + AluY SINE Alu 2 311 0 878 150 29 118 chr1 18006186 18006325 -224658028 + MER58 DNA MER1_type 2311 2417 -3 1328 154 0 51 chr1 18006329 18006503 -224657850 - AluJo SINE Alu -5 307 146 2121 122 24 0 chr1 18006503 18006797 -224657556 - AluSx SINE Alu -11 301 1 1328 154 0 51 chr1 18006797 18006856 -224657497 - AluJo SINE Alu -166 146 86 459 171 126 0 chr1 18006856 18006944 -224657409 + L1ME3A LINE L1 6044 6150 -20 501 84 0 0 chr1 18006944 18007015 -224657338 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 459 171 126 0 chr1 18007015 18007037 -224657316 + L1ME3A LINE L1 6150 6168 -2 2098 162 0 0 chr1 18007041 18007349 -224657004 + AluSx SINE Alu 1 308 -4 2322 104 3 0 chr1 18007351 18007649 -224656704 + AluSp SINE Alu 1 299 -14 2406 75 0 0 chr1 18007662 18007944 -224656409 + AluSq SINE Alu 1 282 -31 2392 83 3 3 chr1 18007944 18008244 -224656109 - AluSq SINE Alu -12 301 1 1171 57 0 0 chr1 18008266 18008424 -224655929 - L1PA4 LINE L1 -1 6154 5997 327 238 0 36 chr1 18008761 18008845 -224655508 - MIR SINE MIR -94 168 88 21 0 0 0 chr1 18008853 18008874 -224655479 + AT_rich Low_complexity Low_complexity 1 21 0 2079 141 0 0 chr1 18009002 18009300 -224655053 + AluSx SINE Alu 1 298 -14 1148 105 0 55 chr1 18009416 18009589 -224654764 - AluSp SINE Alu -14 299 135 2303 92 7 0 chr1 18009589 18009882 -224654471 - AluSx SINE Alu -17 295 1 253 254 38 26 chr1 18009909 18010029 -224654324 - MIR SINE MIR -89 119 3 2020 93 0 8 chr1 18010663 18010922 -224653431 + AluSq SINE Alu 57 313 0 2488 90 0 0 chr1 18010932 18011243 -224653110 + AluY SINE Alu 1 311 0 288 211 0 126 chr1 18011292 18011347 -224653006 - L1ME LINE L1 -459 5662 5622 2289 100 0 13 chr1 18011347 18011657 -224652696 - AluSg SINE Alu -4 306 1 288 211 0 126 chr1 18011657 18011696 -224652657 - L1ME LINE L1 -499 5622 5580 1209 142 5 54 chr1 18011800 18012005 -224652348 + AluSx SINE Alu 3 197 -115 612 162 18 0 chr1 18012162 18012273 -224652080 - AluJb SINE Alu -199 113 1 2225 115 3 16 chr1 18012507 18012821 -224651532 - AluSx SINE Alu -2 310 1 668 225 47 85 chr1 18012832 18012905 -224651448 - L1ME2 LINE L1 0 6164 6090 2018 144 0 3 chr1 18012905 18013203 -224651150 - AluSx SINE Alu -15 297 1 668 225 47 85 chr1 18013203 18013374 -224650979 - L1ME2 LINE L1 -74 6090 5914 2186 106 0 3 chr1 18013374 18013681 -224650672 - AluSx SINE Alu 0 306 1 668 225 47 85 chr1 18013681 18013692 -224650661 - L1ME2 LINE L1 -250 5914 5916 2107 112 3 24 chr1 18013692 18013986 -224650367 - AluSq SINE Alu -25 288 1 668 225 47 85 chr1 18013986 18014006 -224650347 - L1ME2 LINE L1 -247 5917 5898 542 275 53 18 chr1 18014018 18014030 -224650323 - MIR SINE MIR -58 204 194 2183 90 0 27 chr1 18014030 18014331 -224650022 - AluSq SINE Alu -20 293 1 542 275 53 18 chr1 18014331 18014489 -224649864 - MIR SINE MIR -68 194 28 475 284 46 67 chr1 18014774 18014968 -224649385 + MIR3 SINE MIR 18 207 -1 2114 112 0 24 chr1 18015115 18015410 -224648943 + AluJo SINE Alu 9 296 -16 355 304 95 0 chr1 18015431 18015589 -224648764 - MIR SINE MIR -1 261 89 572 278 56 39 chr1 18016261 18016545 -224647808 + MARNA DNA Mariner 259 547 -39 24 0 0 0 chr1 18016733 18016757 -224647596 + AT_rich Low_complexity Low_complexity 1 24 0 2258 102 0 0 chr1 18016757 18017063 -224647290 - AluSx SINE Alu 0 306 1 620 117 0 109 chr1 18017065 18017202 -224647151 - MER34B LTR ERV1 -433 132 11 2326 93 0 7 chr1 18017351 18017651 -224646702 - AluSp SINE Alu -15 298 1 2139 82 22 90 chr1 18017690 18017911 -224646442 + THE1C LTR MaLR 1 235 -140 2229 78 0 62 chr1 18017911 18018217 -224646136 - AluSg SINE Alu -23 287 1 2040 87 8 4 chr1 18018217 18018482 -224645871 - AluSg SINE Alu -16 294 29 2343 88 3 3 chr1 18018490 18018784 -224645569 - AluSp SINE Alu -19 294 1 2139 82 22 90 chr1 18018784 18018954 -224645399 + THE1C LTR MaLR 241 375 0 1886 162 23 13 chr1 18019089 18019263 -224645090 - AluJb SINE Alu -5 307 127 2193 113 3 0 chr1 18019263 18019554 -224644799 - AluSc SINE Alu -17 292 1 1886 162 23 13 chr1 18019554 18019681 -224644672 - AluJb SINE Alu -185 127 3 407 220 46 25 chr1 18019953 18020131 -224644222 - L2 LINE L2 -335 2978 2796 530 491 191 0 chr1 18020191 18020427 -224643926 - AluSg SINE Alu -28 282 2 802 126 102 47 chr1 18020430 18020645 -224643708 + LTR8A LTR ERV1 356 582 -145 2461 93 0 0 chr1 18020646 18020948 -224643405 + AluSq SINE Alu 1 302 -11 2058 128 0 32 chr1 18020948 18021260 -224643093 + AluSx SINE Alu 1 302 -10 973 186 12 0 chr1 18021262 18021429 -224642924 + AluJb SINE Alu 136 304 -8 1585 162 86 22 chr1 18021553 18021867 -224642486 - MLT1A1 LTR MaLR -18 347 14 1655 161 39 36 chr1 18021871 18022207 -224642146 - MER1B DNA MER1_type 0 337 1 194 275 0 110 chr1 18022219 18022328 -224642025 + MIR3 SINE MIR 98 194 -14 2324 109 0 13 chr1 18022403 18022716 -224641637 - AluSc SINE Alu 0 309 1 541 281 130 69 chr1 18022717 18023179 -224641174 + L2 LINE L2 2229 2718 -596 962 130 7 0 chr1 18023179 18023317 -224641036 + AluSg SINE Alu 1 139 -171 2643 55 0 3 chr1 18023322 18023630 -224640723 + AluY SINE Alu 1 307 -4 2400 78 7 3 chr1 18023641 18023936 -224640417 + AluSc SINE Alu 1 296 -13 1745 137 29 7 chr1 18024036 18024342 -224640011 + MER41A LTR ERV1 242 554 0 2145 128 0 13 chr1 18024368 18024680 -224639673 + AluSx SINE Alu 1 308 -4 233 259 0 0 chr1 18024681 18024735 -224639618 + L1ME LINE L1 5609 5662 -459 2477 93 0 0 chr1 18024784 18025095 -224639258 - AluY SINE Alu 0 311 1 2044 86 0 8 chr1 18025108 18025365 -224638988 - AluSq SINE Alu -2 311 57 253 254 38 26 chr1 18025999 18026119 -224638234 + MIR SINE MIR 3 119 -89 1849 118 0 0 chr1 18026146 18026391 -224637962 + AluSx SINE Alu 1 245 -67 2231 128 0 0 chr1 18026703 18027001 -224637352 - AluSx SINE Alu -5 307 10 317 219 52 21 chr1 18027037 18027133 -224637220 - U13 snRNA snRNA -2 102 4 2202 101 3 3 chr1 18027155 18027474 -224636879 - AluSx SINE Alu 0 319 1 738 174 8 0 chr1 18027771 18027903 -224636450 - FLAM_C SINE Alu 0 133 1 180 0 0 0 chr1 18027906 18027926 -224636427 + (TA)n Simple_repeat Simple_repeat 2 21 0 2481 72 0 7 chr1 18027926 18028230 -224636123 - AluY SINE Alu -9 302 1 1525 130 49 16 chr1 18028296 18028542 -224635811 + AluSx SINE Alu 34 287 -25 1362 120 162 39 chr1 18028662 18028921 -224635432 + AluSg1 SINE Alu 1 291 -18 2144 115 10 7 chr1 18028952 18029257 -224635096 + AluSx SINE Alu 2 307 -5 581 319 29 67 chr1 18029278 18029726 -224634627 + L1MEc LINE L1 36 466 -5930 873 224 0 57 chr1 18029803 18030013 -224634340 - AluJo SINE Alu -39 273 76 2147 112 14 0 chr1 18030014 18030310 -224634043 - AluSq SINE Alu -13 300 1 2076 133 13 3 chr1 18030312 18030612 -224633741 - AluSx SINE Alu -9 303 1 199 254 63 16 chr1 18031079 18031142 -224633211 + MIR3 SINE MIR 91 156 -52 1240 102 6 17 chr1 18031205 18031382 -224632971 + AluSg SINE Alu 9 183 -127 954 88 15 0 chr1 18031483 18031620 -224632733 + L1PB3 LINE L1 5417 5555 -599 3414 132 16 44 chr1 18031671 18031718 -224632635 + L1PB3 LINE L1 5557 5604 -550 3349 74 11 9 chr1 18031718 18032175 -224632178 - LTR22A LTR ERVK 0 458 1 3414 132 16 44 chr1 18032175 18032248 -224632105 + L1PB3 LINE L1 5604 5678 -476 1718 122 107 19 chr1 18032248 18032518 -224631835 + AluSx SINE Alu 1 294 -18 3414 132 16 44 chr1 18032518 18033008 -224631345 + L1PB3 LINE L1 5678 6151 -3 2072 143 3 3 chr1 18033028 18033329 -224631024 + AluSx SINE Alu 1 301 -11 1847 179 3 3 chr1 18033334 18033646 -224630707 + AluSx SINE Alu 1 312 0 579 204 18 133 chr1 18033667 18033893 -224630460 - MER39 LTR ERV1 -175 532 333 25 0 0 0 chr1 18034067 18034092 -224630261 + AT_rich Low_complexity Low_complexity 1 25 0 1356 124 5 5 chr1 18034530 18034724 -224629629 - AluSg/x SINE Alu -15 295 102 2522 96 0 0 chr1 18034727 18035040 -224629313 - AluSq SINE Alu 0 313 1 2210 95 9 41 chr1 18035046 18035362 -224628991 - AluSq SINE Alu -6 307 2 2505 84 3 0 chr1 18035373 18035682 -224628671 - AluSp SINE Alu -3 310 1 516 71 38 8 chr1 18035737 18035948 -224628405 + AluSp SINE Alu 1 296 -17 2616 47 0 0 chr1 18036039 18036336 -224628017 + AluY SINE Alu 1 297 -14 984 161 0 0 chr1 18036336 18036479 -224627874 + AluSg/x SINE Alu 134 276 -36 216 0 0 0 chr1 18036479 18036503 -224627850 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1471 155 92 15 chr1 18036586 18036857 -224627496 - AluJb SINE Alu -20 292 1 2103 123 7 7 chr1 18036882 18037183 -224627170 - AluSx SINE Alu -10 302 2 1336 150 0 52 chr1 18038009 18038182 -224626171 - AluJo SINE Alu -6 306 146 2062 111 24 17 chr1 18038182 18038479 -224625874 - AluSx SINE Alu -13 299 1 1336 150 0 52 chr1 18038479 18038538 -224625815 - AluJo SINE Alu -166 146 86 439 180 126 0 chr1 18038538 18038626 -224625727 + L1ME3A LINE L1 6044 6150 -20 567 96 0 0 chr1 18038626 18038709 -224625644 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 439 180 126 0 chr1 18038709 18038731 -224625622 + L1ME3A LINE L1 6150 6168 -2 2074 164 0 0 chr1 18038735 18039040 -224625313 + AluSx SINE Alu 1 305 -7 1417 137 0 0 chr1 18038831 18039042 -224625311 + AluSg/x SINE Alu 97 307 -5 2301 107 3 0 chr1 18039042 18039341 -224625012 + AluSp SINE Alu 1 300 -13 2087 122 0 4 chr1 18039354 18039632 -224624721 + AluSx SINE Alu 1 277 -35 1115 77 15 52 chr1 18039632 18040097 -224624256 + MER61-int LTR ERV1 1907 2497 -2720 959 104 0 0 chr1 18040278 18040432 -224623921 + MER61-int LTR ERV1 2486 2639 -2578 2212 99 7 3 chr1 18040432 18040735 -224623618 + AluSg SINE Alu 2 305 -5 406 234 74 11 chr1 18040776 18040951 -224623402 + L2 LINE L2 2807 2992 -321 1677 171 3 13 chr1 18040986 18041291 -224623062 - AluJo SINE Alu -10 302 1 277 284 62 0 chr1 18041395 18041476 -224622877 + L2 LINE L2 3005 3090 -182 238 317 132 24 chr1 18041773 18041940 -224622413 + MIR SINE MIR 31 215 -47 730 219 84 0 chr1 18041944 18042122 -224622231 + MIR SINE MIR 70 262 0 2150 105 0 3 chr1 18042224 18042519 -224621834 - AluSg SINE Alu -14 296 3 1268 103 0 0 chr1 18042521 18042695 -224621658 - AluSg/x SINE Alu -6 306 133 432 81 0 0 chr1 18042797 18042859 -224621494 + Alu SINE Alu 239 300 -11 327 286 28 99 chr1 18042867 18042900 -224621453 - MLT1I LTR MaLR -46 363 329 2248 86 0 10 chr1 18042900 18043033 -224621320 + AluSg SINE Alu 1 134 -176 2128 112 0 3 chr1 18043033 18043337 -224621016 + AluSg SINE Alu 1 303 -7 2248 86 0 10 chr1 18043337 18043504 -224620849 + AluSg SINE Alu 134 298 -12 1983 113 3 36 chr1 18043506 18043815 -224620538 + AluY SINE Alu 3 301 -10 327 286 28 99 chr1 18043815 18043960 -224620393 - MLT1I LTR MaLR -81 328 195 1909 149 3 0 chr1 18044156 18044457 -224619896 - AluSx SINE Alu -10 302 1 581 264 90 12 chr1 18044487 18044692 -224619661 - MIR SINE MIR -1 261 41 2192 82 3 3 chr1 18044692 18044984 -224619369 - AluSp SINE Alu -21 292 1 581 264 90 12 chr1 18044984 18045006 -224619347 - MIR SINE MIR -221 41 22 830 174 0 8 chr1 18045121 18045253 -224619100 + FLAM_C SINE Alu 1 131 -2 36 53 0 0 chr1 18045496 18045553 -224618800 + AT_rich Low_complexity Low_complexity 1 57 0 620 26 0 0 chr1 18045559 18045637 -224618716 - L1PA3 LINE L1 0 6155 6078 502 266 56 0 chr1 18045665 18045808 -224618545 - MIR SINE MIR -107 155 5 400 145 16 0 chr1 18045990 18046052 -224618301 + AluS SINE Alu 2 64 -249 1137 200 79 0 chr1 18046240 18046520 -224617833 - AluSq SINE Alu -1 302 1 498 329 31 4 chr1 18046523 18046748 -224617605 + L2 LINE L2 2308 2538 -776 493 108 0 0 chr1 18046748 18046813 -224617540 - AluJ/FLAM SINE Alu -246 66 2 357 299 136 0 chr1 18046823 18046970 -224617383 + MIR SINE MIR 81 247 -15 2136 117 0 0 chr1 18047564 18047854 -224616499 - AluSx SINE Alu -22 290 1 218 305 0 0 chr1 18047928 18047987 -224616366 + C-rich Low_complexity Low_complexity 2 60 0 2160 126 0 0 chr1 18048126 18048436 -224615917 - AluSx SINE Alu -2 310 1 391 325 44 58 chr1 18049173 18049268 -224615085 + MIR SINE MIR 58 153 -109 846 146 0 0 chr1 18049268 18049391 -224614962 + FLAM_C SINE Alu 1 123 -10 391 325 44 58 chr1 18049391 18049501 -224614852 + MIR SINE MIR 153 260 -2 1011 147 0 6 chr1 18049503 18049666 -224614687 - AluSg/x SINE Alu -12 298 137 419 337 35 25 chr1 18049979 18050178 -224614175 - L2 LINE L2 0 3313 3113 514 283 70 6 chr1 18050319 18050500 -224613853 - MIR SINE MIR -47 215 25 481 252 17 8 chr1 18050992 18051111 -224613242 + MIR SINE MIR 15 134 -128 2021 116 7 7 chr1 18051140 18051432 -224612921 - AluSx SINE Alu -20 292 1 1660 173 3 3 chr1 18051441 18051730 -224612623 - AluJo SINE Alu -23 289 1 2060 123 0 0 chr1 18051764 18052070 -224612283 + AluSx SINE Alu 1 306 0 24 0 0 0 chr1 18052070 18052094 -224612259 + AT_rich Low_complexity Low_complexity 1 24 0 605 278 56 39 chr1 18052282 18052566 -224611787 - MARNA DNA Mariner -39 547 259 2209 88 3 55 chr1 18052811 18053141 -224611212 - AluSp SINE Alu 0 313 1 2249 104 10 0 chr1 18053143 18053451 -224610902 - AluSx SINE Alu -1 311 1 469 202 24 24 chr1 18054145 18054269 -224610084 + MER20 DNA MER1_type 1 124 -95 2165 107 0 19 chr1 18054297 18054614 -224609739 - AluSx SINE Alu -1 311 1 1663 195 20 0 chr1 18054649 18054951 -224609402 - AluJb SINE Alu -4 308 1 204 243 0 0 chr1 18056014 18056051 -224608302 - MIR SINE MIR -193 69 33 317 287 68 12 chr1 18056169 18056334 -224608019 + MIR SINE MIR 25 207 -55 1645 139 68 7 chr1 18056337 18056618 -224607735 - AluSx SINE Alu -5 307 10 2051 124 0 7 chr1 18056670 18056977 -224607376 - AluSx SINE Alu -7 305 1 1084 201 18 27 chr1 18057006 18057230 -224607123 - MER58A DNA MER1_type 0 224 3 2218 109 0 34 chr1 18057524 18057846 -224606507 + AluSx SINE Alu 1 311 -1 2176 81 3 20 chr1 18057898 18058195 -224606158 + AluSp SINE Alu 2 293 -20 367 226 0 21 chr1 18058246 18058339 -224606014 - MIR SINE MIR -51 211 121 1813 148 23 7 chr1 18058342 18058645 -224605708 + AluJb SINE Alu 5 312 0 1369 112 9 40 chr1 18058647 18058871 -224605482 + AluSg/x SINE Alu 83 299 -11 199 334 73 11 chr1 18058871 18058974 -224605379 - MIR SINE MIR -84 124 14 294 347 74 17 chr1 18059787 18059963 -224604390 - MIR3 SINE MIR -3 205 20 292 271 233 45 chr1 18060094 18060194 -224604159 - L3 LINE CR1 -16 1561 1428 2168 62 4 4 chr1 18060194 18060492 -224603861 - AluSp SINE Alu 0 312 15 292 271 233 45 chr1 18060492 18060523 -224603830 - L3 LINE CR1 -149 1428 1404 784 269 25 33 chr1 18060544 18060786 -224603567 - MIR SINE MIR -15 247 8 264 274 72 62 chr1 18061351 18061507 -224602846 - MIR SINE MIR -69 139 33 633 170 0 0 chr1 18061968 18062062 -224602291 + FRAM SINE Alu 10 103 -73 2202 114 0 9 chr1 18062083 18062398 -224601955 - AluSx SINE Alu 0 312 1 491 306 166 0 chr1 18062415 18062572 -224601781 - MIR SINE MIR -12 250 68 277 310 30 10 chr1 18062613 18062713 -224601640 - MIR3 SINE MIR -102 106 5 193 358 101 0 chr1 18062726 18062835 -224601518 + MIR SINE MIR 34 153 -55 1898 102 3 99 chr1 18063011 18063334 -224601019 + AluSx SINE Alu 11 302 -10 1254 108 72 0 chr1 18063339 18063374 -224600979 + AluJb SINE Alu 83 114 -198 567 0 0 0 chr1 18063374 18063437 -224600916 + (CA)n Simple_repeat Simple_repeat 2 64 0 1254 108 72 0 chr1 18063437 18063595 -224600758 + AluJb SINE Alu 114 290 -22 270 314 0 48 chr1 18063656 18063761 -224600592 - MIR SINE MIR -131 131 32 352 315 39 0 chr1 18064381 18064508 -224599845 + MIR SINE MIR 22 153 -55 930 129 0 0 chr1 18064537 18064669 -224599684 + FRAM SINE Alu 10 141 -35 222 37 0 0 chr1 18064674 18064701 -224599652 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 18064708 18064729 -224599624 + AT_rich Low_complexity Low_complexity 1 21 0 2044 152 3 0 chr1 18064736 18065046 -224599307 + AluSx SINE Alu 1 311 -1 289 297 91 3 chr1 18065405 18065573 -224598780 + MIR SINE MIR 12 248 -14 1768 163 10 7 chr1 18065637 18065943 -224598410 + AluSx SINE Alu 1 307 -5 2000 142 30 0 chr1 18066862 18067164 -224597189 - AluSx SINE Alu -1 311 1 1589 163 52 7 chr1 18067214 18067515 -224596838 - AluJo SINE Alu 0 313 1 518 104 28 9 chr1 18067535 18067641 -224596712 + (TCCA)n Simple_repeat Simple_repeat 2 109 0 336 343 63 14 chr1 18067641 18067784 -224596569 - L2 LINE L2 0 3272 3123 401 277 43 14 chr1 18067811 18067952 -224596401 + MIR SINE MIR 114 258 -4 229 204 0 0 chr1 18067954 18068003 -224596350 + (ATG)n Simple_repeat Simple_repeat 2 50 0 2127 123 3 0 chr1 18068005 18068307 -224596046 - AluSx SINE Alu -9 303 1 2322 100 0 0 chr1 18068827 18069136 -224595217 - AluSq SINE Alu -4 309 1 204 308 64 0 chr1 18069144 18069222 -224595131 + L2 LINE L2 3187 3269 -3 513 268 24 24 chr1 18069271 18069439 -224594914 + MIR SINE MIR 17 184 -78 355 265 55 115 chr1 18069637 18069737 -224594616 + MIR SINE MIR 63 147 -115 2064 103 40 3 chr1 18069737 18070038 -224594315 + AluSx SINE Alu 1 312 0 355 265 55 115 chr1 18070038 18070137 -224594216 + MIR SINE MIR 147 250 -12 458 223 49 3 chr1 18070470 18070611 -224593742 + MIR SINE MIR 36 186 -75 2152 114 0 0 chr1 18071598 18071895 -224592458 - AluSx SINE Alu -11 301 5 704 196 34 0 chr1 18072190 18072338 -224592015 + MIR SINE MIR 110 262 0 831 134 0 0 chr1 18072350 18072469 -224591884 - FLAM_C SINE Alu -19 124 6 2123 121 0 19 chr1 18072957 18073133 -224591220 - AluSx SINE Alu -3 309 140 2281 75 0 3 chr1 18073133 18073427 -224590926 - AluY SINE Alu -18 293 1 2123 121 0 19 chr1 18073427 18073565 -224590788 - AluSx SINE Alu -172 140 1 2186 115 3 0 chr1 18073588 18073893 -224590460 - AluSx SINE Alu -6 306 1 3621 116 19 17 chr1 18073916 18074442 -224589911 - MER1A DNA MER1_type 0 527 1 345 283 0 53 chr1 18074453 18074566 -224589787 + MIR3 SINE MIR 10 116 -92 413 320 73 56 chr1 18074812 18075153 -224589200 - L2 LINE L2 0 3272 2926 1692 181 13 3 chr1 18075202 18075500 -224588853 + AluJb SINE Alu 1 301 -11 821 255 49 45 chr1 18075719 18075875 -224588478 - MER102b DNA MER1_type -1137 291 132 1594 169 41 3 chr1 18075875 18076043 -224588310 - AluJo SINE Alu -11 301 116 261 0 0 0 chr1 18076043 18076072 -224588281 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1594 169 41 3 chr1 18076072 18076193 -224588160 - AluJo SINE Alu -196 116 1 821 255 49 45 chr1 18076193 18076322 -224588031 - MER102b DNA MER1_type -1296 132 5 211 200 0 0 chr1 18076716 18076734 -224587619 + A-rich Low_complexity Low_complexity 1 18 -27 963 112 0 8 chr1 18076734 18076868 -224587485 + FLAM_C SINE Alu 1 133 0 211 200 0 0 chr1 18076868 18076894 -224587459 + A-rich Low_complexity Low_complexity 17 45 0 807 162 88 0 chr1 18076943 18077091 -224587262 + FRAM SINE Alu 14 174 -2 361 264 0 22 chr1 18077315 18077406 -224586947 + L2 LINE L2 3210 3298 -15 202 206 16 48 chr1 18077464 18077527 -224586826 - L2 LINE L2 -106 3207 3147 244 370 16 8 chr1 18077572 18077699 -224586654 + L2 LINE L2 3166 3293 -20 254 236 115 47 chr1 18078003 18078152 -224586201 + MIR SINE MIR 38 202 -60 48 72 0 0 chr1 18078657 18078754 -224585599 + GC_rich Low_complexity Low_complexity 1 97 0 352 237 144 10 chr1 18080353 18080450 -224583903 + L2 LINE L2 3204 3313 0 2083 145 0 16 chr1 18080567 18080704 -224583649 + AluSx SINE Alu 1 139 -173 2132 128 3 0 chr1 18080704 18081008 -224583345 + AluSq SINE Alu 1 305 -8 2083 145 0 16 chr1 18081008 18081187 -224583166 + AluSx SINE Alu 139 312 0 1658 174 4 4 chr1 18081189 18081470 -224582883 + AluJo SINE Alu 5 285 -27 188 268 54 0 chr1 18081513 18081569 -224582784 - L2 LINE L2 -4 3268 3210 369 303 26 51 chr1 18081701 18081896 -224582457 - MIR SINE MIR -52 210 21 2119 102 3 0 chr1 18082149 18082454 -224581899 - AluSq SINE Alu 0 306 1 1991 109 3 24 chr1 18082465 18082759 -224581594 - AluSq SINE Alu -25 288 1 234 91 0 0 chr1 18082767 18082800 -224581553 + (TA)n Simple_repeat Simple_repeat 2 34 0 2192 84 0 17 chr1 18082807 18083104 -224581249 - AluSq SINE Alu -21 292 1 22 94 0 0 chr1 18083106 18083170 -224581183 + AT_rich Low_complexity Low_complexity 1 64 0 2521 113 3 3 chr1 18083243 18083598 -224580755 - THE1B LTR MaLR -9 355 1 186 71 0 0 chr1 18083602 18083630 -224580723 + (TG)n Simple_repeat Simple_repeat 2 29 0 863 157 138 0 chr1 18083634 18083793 -224580560 - MER63B DNA MER1_type -255 181 1 217 209 0 0 chr1 18084366 18084409 -224579944 + L2 LINE L2 2919 2961 -311 231 182 0 0 chr1 18084429 18084473 -224579880 - L2 LINE L2 -310 2962 2919 465 272 113 41 chr1 18084917 18085112 -224579241 - MIR SINE MIR -45 217 9 285 302 124 0 chr1 18086219 18086348 -224578005 - L1ME4a LINE L1 0 6121 5977 196 324 29 0 chr1 18086364 18086432 -224577921 - L2 LINE L2 0 3313 3244 * 481 292 77 18 chr1 18086425 18086653 -224577700 + MIR SINE MIR 22 261 -1 960 236 114 84 chr1 18086655 18087152 -224577201 - MER34 LTR ERV1 0 542 27 2110 121 16 0 chr1 18087152 18087457 -224576896 - AluSx SINE Alu -2 310 1 960 236 114 84 chr1 18087457 18087485 -224576868 - MER34 LTR ERV1 -515 27 1 801 233 30 99 chr1 18087487 18087527 -224576826 - L2 LINE L2 -68 3245 3204 2053 132 0 0 chr1 18087527 18087831 -224576522 - AluSx SINE Alu -8 304 1 801 233 30 99 chr1 18087831 18088163 -224576190 - L2 LINE L2 -109 3204 2899 202 366 38 53 chr1 18088325 18088456 -224575897 - L2 LINE L2 -4 3268 3140 726 318 134 15 chr1 18088466 18088869 -224575484 - L2 LINE L2 -568 2746 2246 2102 119 3 3 chr1 18088869 18089179 -224575174 + AluSq SINE Alu 1 310 -3 726 318 134 15 chr1 18089179 18089379 -224574974 - L2 LINE L2 -1068 2246 2071 276 338 44 54 chr1 18089404 18089608 -224574745 - MIR SINE MIR -25 237 36 274 315 0 0 chr1 18089705 18089778 -224574575 - L2 LINE L2 -11 3261 3189 238 260 110 27 chr1 18090270 18090343 -224574010 - MIR SINE MIR -92 116 38 241 308 89 14 chr1 18090683 18090846 -224573507 + MIR SINE MIR 3 180 -68 * 601 317 53 18 chr1 18090841 18090909 -224573444 - MIR SINE MIR 0 262 198 1815 141 3 66 chr1 18090909 18091228 -224573125 - AluSx SINE Alu -13 299 1 601 317 53 18 chr1 18091228 18091386 -224572967 - MIR SINE MIR -64 198 28 207 368 14 21 chr1 18091521 18091665 -224572688 - MIR3 SINE MIR -56 152 10 501 284 46 67 chr1 18091671 18091865 -224572488 + MIR3 SINE MIR 18 207 -1 2017 112 0 24 chr1 18092012 18092307 -224572046 + AluJo SINE Alu 9 296 -16 385 304 85 45 chr1 18092328 18092529 -224571824 - MIR SINE MIR -1 261 53 371 263 127 0 chr1 18092913 18093031 -224571322 - MIR3 SINE MIR -22 186 54 1816 172 6 16 chr1 18093173 18093487 -224570866 - AluJo SINE Alu -1 311 1 260 293 0 24 chr1 18093636 18093734 -224570619 + MIR SINE MIR 48 136 -72 225 283 62 9 chr1 18093735 18093848 -224570505 + MER103 DNA DNA 46 164 -2 1877 136 35 0 chr1 18093965 18094251 -224570102 - AluSx SINE Alu -16 296 1 512 282 35 0 chr1 18094900 18095070 -224569283 + MIR3 SINE MIR 22 197 -11 454 311 5 62 chr1 18095247 18095440 -224568913 - MER5A DNA MER1_type -1 188 7 1043 201 6 0 chr1 18095471 18095645 -224568708 + FAM SINE Alu 1 175 0 2209 121 0 6 chr1 18095656 18095970 -224568383 + AluSx SINE Alu 1 312 0 419 338 0 21 chr1 18096089 18096234 -224568119 - MER5A DNA MER1_type -2 187 46 978 211 0 0 chr1 18096605 18096887 -224567466 + (TCCA)n Simple_repeat Simple_repeat 1 282 0 496 388 67 7 chr1 18096894 18097193 -224567160 - L2 LINE L2 0 3272 2956 814 254 36 9 chr1 18097667 18097887 -224566466 + MIR SINE MIR 12 237 -25 361 303 79 7 chr1 18097974 18098126 -224566227 + MIR SINE MIR 31 193 -69 264 346 74 31 chr1 18098763 18098925 -224565428 - MIR SINE MIR -73 189 21 2238 99 3 0 chr1 18099167 18099459 -224564894 - AluSp SINE Alu -20 293 1 496 297 132 9 chr1 18099556 18099768 -224564585 + MIR SINE MIR 19 256 -6 206 324 63 18 chr1 18100090 18100201 -224564152 - MIR SINE MIR -59 149 34 401 267 69 0 chr1 18100503 18100619 -224563734 + MIR3 SINE MIR 6 129 -79 201 325 13 26 chr1 18100621 18100698 -224563655 - L2 LINE L2 0 3313 3238 1920 157 0 7 chr1 18100727 18101032 -224563321 + AluJb SINE Alu 1 303 -9 268 300 70 0 chr1 18101057 18101157 -224563196 + MIR SINE MIR 156 262 0 197 254 0 68 chr1 18101386 18101445 -224562908 + L2 LINE L2 3255 3309 -4 316 237 9 79 chr1 18101799 18101829 -224562524 + L2 LINE L2 3191 3222 -91 2046 141 0 0 chr1 18101829 18102128 -224562225 - AluJb SINE Alu -11 301 3 316 237 9 79 chr1 18102128 18102211 -224562142 + L2 LINE L2 3222 3296 -17 243 61 0 0 chr1 18102215 18102248 -224562105 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 388 281 109 8 chr1 18102271 18102399 -224561954 - MIR SINE MIR -108 154 14 222 309 31 21 chr1 18102399 18102496 -224561857 + L3 LINE CR1 1475 1572 -5 868 308 8 8 chr1 18103159 18103406 -224560947 + MIR SINE MIR 6 252 -10 1524 192 68 0 chr1 18103592 18103915 -224560438 - MLT1A1 LTR MaLR -12 353 9 196 323 140 11 chr1 18104475 18104568 -224559785 - L2 LINE L2 -29 3243 3139 1247 146 24 14 chr1 18104754 18104966 -224559387 - MER20 DNA MER1_type -2 217 4 2129 119 0 3 chr1 18105966 18106259 -224558094 - AluSx SINE Alu -20 292 1 464 289 7 20 chr1 18106820 18106972 -224557381 - MIR SINE MIR -6 256 107 368 292 59 15 chr1 18107621 18107756 -224556597 + MIR SINE MIR 38 174 -62 181 271 68 17 chr1 18108432 18108491 -224555862 + L3b LINE CR1 1421 1482 -101 2178 258 162 15 chr1 18108711 18110115 -224554238 - L2 LINE L2 -3 3310 1671 2066 148 0 0 chr1 18110115 18110426 -224553927 - AluSx SINE Alu -1 311 1 2178 258 162 15 chr1 18110426 18110464 -224553889 - L2 LINE L2 -1642 1671 1640 266 279 48 39 chr1 18111266 18111370 -224552983 + L2 LINE L2 3202 3306 -7 276 309 73 1 chr1 18111701 18111837 -224552516 + MIR SINE MIR 59 202 -6 197 139 23 0 chr1 18112165 18112208 -224552145 + GA-rich Low_complexity Low_complexity 1 44 0 255 316 51 0 chr1 18112796 18112875 -224551478 + MIR3 SINE MIR 79 161 -47 318 248 0 74 chr1 18113835 18113956 -224550397 + MER5B DNA MER1_type 45 156 -22 271 338 78 47 chr1 18113964 18114323 -224550030 - L2 LINE L2 -218 3054 2675 243 281 0 16 chr1 18115393 18115457 -224548896 - MIR SINE MIR -183 79 17 246 279 96 29 chr1 18115496 18115600 -224548753 + MIR3 SINE MIR 93 203 -5 2128 113 7 7 chr1 18115629 18115938 -224548415 - AluSx SINE Alu -3 309 1 450 199 37 32 chr1 18115938 18116075 -224548278 - MIR SINE MIR -54 154 36 301 222 38 52 chr1 18116307 18116456 -224547897 + MIR SINE MIR 16 160 -48 1554 154 19 8 chr1 18117008 18117267 -224547086 + AluJo SINE Alu 14 275 -37 289 254 75 45 chr1 18117349 18117483 -224546870 + L1MC4a LINE L1 5798 5935 -1873 2189 110 3 0 chr1 18117611 18117912 -224546441 - AluSx SINE Alu -10 302 1 586 248 220 5 chr1 18117970 18118184 -224546169 + MIR SINE MIR 3 262 0 181 324 143 9 chr1 18119300 18119405 -224544948 + MIR SINE MIR 31 149 -113 2213 101 16 0 chr1 18119625 18119932 -224544421 + AluSx SINE Alu 1 312 0 382 118 79 13 chr1 18119945 18120021 -224544332 + MER53 DNA DNA 109 189 0 540 261 56 11 chr1 18120139 18120319 -224544034 + MIR SINE MIR 2 189 -73 258 341 87 31 chr1 18121172 18121401 -224542952 + L2 LINE L2 2934 3175 -97 1466 163 110 25 chr1 18121537 18121819 -224542534 + AluJb SINE Alu 1 306 -6 262 247 14 27 chr1 18121946 18122019 -224542334 + (TAA)n Simple_repeat Simple_repeat 1 72 0 694 269 93 23 chr1 18122038 18122254 -224542099 - MIR SINE MIR -3 259 29 1063 173 0 0 chr1 18122453 18122615 -224541738 - FRAM SINE Alu -21 155 1 1906 179 0 0 chr1 18122630 18122937 -224541416 - AluJo SINE Alu -5 307 1 1172 280 71 26 chr1 18122986 18123411 -224540942 - L2 LINE L2 -13 3300 2857 207 0 0 0 chr1 18123450 18123473 -224540880 + (CA)n Simple_repeat Simple_repeat 1 23 0 220 287 96 0 chr1 18123840 18123934 -224540419 + MIR3 SINE MIR 11 113 -95 228 330 11 11 chr1 18124336 18124424 -224539929 + (TCCA)n Simple_repeat Simple_repeat 1 88 0 495 310 29 47 chr1 18124520 18124559 -224539794 - MIR SINE MIR -25 237 199 1132 168 32 41 chr1 18124559 18124779 -224539574 + MER20 DNA MER1_type 1 218 -1 495 310 29 47 chr1 18124779 18124966 -224539387 - MIR SINE MIR -63 199 14 184 159 23 23 chr1 18126018 18126062 -224538291 + L2 LINE L2 2977 3020 -252 450 0 0 0 chr1 18127442 18127492 -224536861 + (TG)n Simple_repeat Simple_repeat 2 51 0 310 299 122 15 chr1 18127642 18127788 -224536565 + MIR SINE MIR 2 161 -47 269 255 50 113 chr1 18129093 18129234 -224535119 + L2 LINE L2 3180 3311 -2 2017 130 3 3 chr1 18129297 18129605 -224534748 + AluSx SINE Alu 1 308 -4 634 243 40 50 chr1 18129797 18129831 -224534522 - MIR SINE MIR -32 230 197 1903 156 3 13 chr1 18129831 18130001 -224534352 - AluJb SINE Alu -8 304 137 2226 86 10 3 chr1 18130001 18130302 -224534051 - AluSq SINE Alu -10 303 1 1903 156 3 13 chr1 18130302 18130438 -224533915 - AluJb SINE Alu -175 137 1 634 243 40 50 chr1 18130438 18130605 -224533748 - MIR SINE MIR -65 197 31 206 294 92 46 chr1 18131860 18131895 -224532458 - MIR SINE MIR -55 207 175 2162 190 62 56 chr1 18131895 18132396 -224531957 + MLT1D LTR MaLR 1 504 -1 206 294 92 46 chr1 18132396 18132469 -224531884 - MIR SINE MIR -87 175 94 542 330 72 4 chr1 18132730 18132966 -224531387 - MIR SINE MIR -1 261 10 341 301 29 87 chr1 18132991 18133068 -224531285 + MIR SINE MIR 51 131 -131 2096 108 13 23 chr1 18133068 18133375 -224530978 - AluSx SINE Alu -8 304 1 341 301 29 87 chr1 18133375 18133470 -224530883 + MIR SINE MIR 131 213 -49 506 265 181 84 chr1 18133619 18133868 -224530485 - L1ME4a LINE L1 -1 6120 5848 523 266 36 14 chr1 18134355 18134494 -224529859 - MIR SINE MIR -27 235 94 304 285 234 0 chr1 18134480 18134638 -224529715 - MIR SINE MIR -48 214 20 * 311 256 226 15 chr1 18134661 18134794 -224529559 + MER5B DNA MER1_type 4 164 -14 196 158 79 0 chr1 18134794 18134832 -224529521 + MIR3 SINE MIR 155 195 -13 1021 94 0 82 chr1 18135349 18135519 -224528834 + AluSx SINE Alu 1 156 -156 263 274 24 24 chr1 18136211 18136295 -224528058 + MIR SINE MIR 14 97 -165 2277 137 3 62 chr1 18136626 18136693 -224527660 - MLT1A1 LTR MaLR 0 365 296 2076 137 0 0 chr1 18136693 18136986 -224527367 - AluSx SINE Alu -13 299 7 2277 137 3 62 chr1 18136986 18137306 -224527047 - MLT1A1 LTR MaLR -69 296 1 459 284 60 51 chr1 18137481 18137652 -224526701 + MIR SINE MIR 15 190 -72 1968 137 40 0 chr1 18137652 18137952 -224526401 + AluSx SINE Alu 1 312 0 459 284 60 51 chr1 18137952 18137995 -224526358 + MIR SINE MIR 190 231 -31 860 231 16 0 chr1 18138412 18138594 -224525759 - MER3 DNA MER1_type 0 209 25 313 319 11 0 chr1 18138638 18138732 -224525621 + MIR SINE MIR 21 115 -147 1989 238 41 69 chr1 18139016 18139363 -224524990 - L1MD3 LINE L1 -2 7993 7673 2259 114 0 0 chr1 18139363 18139670 -224524683 + AluSx SINE Alu 6 312 0 1989 238 41 69 chr1 18139670 18140006 -224524347 - L1MD3 LINE L1 -322 7673 7329 1953 158 7 0 chr1 18140034 18140337 -224524016 - AluSx SINE Alu -7 305 1 316 321 154 15 chr1 18141122 18141527 -224522826 - L2 LINE L2 -236 3036 2578 238 320 39 12 chr1 18142344 18142472 -224521881 + MIR SINE MIR 15 146 -62 220 258 0 32 chr1 18142806 18142868 -224521485 - MIR SINE MIR -133 75 16 191 364 200 0 chr1 18143801 18143911 -224520442 + MIR SINE MIR 61 192 -70 347 269 48 0 chr1 18143920 18144024 -224520329 + MIR SINE MIR 106 214 -48 220 310 168 0 chr1 18144720 18144833 -224519520 - MIR SINE MIR -20 242 111 2251 115 0 0 chr1 18144873 18145185 -224519168 - AluSx SINE Alu 0 312 1 22 0 0 0 chr1 18145192 18145214 -224519139 + AT_rich Low_complexity Low_complexity 1 22 0 342 304 94 8 chr1 18145265 18145451 -224518902 - MIR3 SINE MIR -50 212 13 2020 144 0 0 chr1 18145784 18146076 -224518277 + AluJo SINE Alu 1 292 -20 198 0 0 0 chr1 18146621 18146643 -224517710 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 402 306 83 0 chr1 18146791 18146971 -224517382 - MER117 DNA MER1_type -2 195 1 1988 138 6 6 chr1 18147363 18147674 -224516679 - AluSx SINE Alu -1 311 1 218 305 53 46 chr1 18148000 18148131 -224516222 - L2 LINE L2 -15 3257 3126 473 263 53 0 chr1 18148718 18148851 -224515502 - MER5A DNA MER1_type 0 189 50 243 242 25 108 chr1 18149966 18150086 -224514267 - MIR SINE MIR -53 209 100 501 62 0 0 chr1 18150125 18150190 -224514163 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 509 252 189 18 chr1 18150221 18150443 -224513910 - MIR SINE MIR 0 262 3 279 0 0 0 chr1 18150569 18150600 -224513753 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 380 299 30 6 chr1 18150622 18150698 -224513655 + (TCCA)n Simple_repeat Simple_repeat 4 77 -97 822 221 96 40 chr1 18150698 18150897 -224513456 - MER63A DNA MER1_type 0 210 1 380 299 30 6 chr1 18150897 18150987 -224513366 + (TCCA)n Simple_repeat Simple_repeat 77 174 0 243 229 0 0 chr1 18151018 18151079 -224513274 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 283 356 22 0 chr1 18151092 18151227 -224513126 + (TCCA)n Simple_repeat Simple_repeat 3 140 0 244 290 129 0 chr1 18151231 18151324 -224513029 - L2 LINE L2 0 3272 3168 470 290 8 15 chr1 18152036 18152167 -224512186 - MER5A DNA MER1_type -4 185 56 575 326 12 6 chr1 18152356 18152528 -224511825 + MIR SINE MIR 15 187 -75 186 308 56 56 chr1 18152663 18152770 -224511583 - MIR SINE MIR -154 108 2 978 221 50 0 chr1 18153617 18153816 -224510537 - MER3 DNA MER1_type 0 209 1 285 290 88 20 chr1 18154246 18154395 -224509958 - MIR SINE MIR -62 146 30 223 353 131 19 chr1 18155148 18155468 -224508885 - L2 LINE L2 0 3272 2917 439 326 53 21 chr1 18155492 18155679 -224508674 - MIR SINE MIR -5 257 65 211 374 23 29 chr1 18155664 18155835 -224508518 - L2 LINE L2 -436 2878 2709 * 347 241 13 0 chr1 18155845 18155924 -224508429 - L2 LINE L2 -2 3311 3232 373 237 82 10 chr1 18156277 18156374 -224507979 + MIR SINE MIR 81 184 -78 201 129 0 0 chr1 18157081 18157112 -224507241 + (TCC)n Simple_repeat Simple_repeat 2 32 0 2055 98 3 57 chr1 18158498 18158815 -224505538 + AluSx SINE Alu 1 300 -12 405 209 23 0 chr1 18158982 18159068 -224505285 + MER20 DNA MER1_type 106 193 -26 399 259 28 56 chr1 18159413 18159556 -224504797 + MER5B DNA MER1_type 8 146 -32 278 278 169 68 chr1 18159628 18159823 -224504530 + L3 LINE CR1 1142 1378 -199 2224 113 0 0 chr1 18159823 18160124 -224504229 - AluSx SINE Alu -11 301 1 278 278 169 68 chr1 18160124 18160223 -224504130 + L3 LINE CR1 1378 1466 -111 330 273 153 7 chr1 18162164 18162314 -224502039 + MIR3 SINE MIR 12 183 -25 192 329 58 15 chr1 18162707 18162844 -224501509 + MIR3 SINE MIR 33 175 -33 2335 158 69 2 chr1 18165238 18165719 -224498634 - L1MB3 LINE L1 -35 6148 5636 464 303 24 36 chr1 18166353 18166518 -224497835 + MIR SINE MIR 15 177 -85 2040 120 27 0 chr1 18166828 18167120 -224497233 + AluSx SINE Alu 12 311 -1 312 294 33 0 chr1 18167441 18167533 -224496820 + L3 LINE CR1 1297 1391 -186 445 262 68 44 chr1 18167727 18167769 -224496584 + Charlie8 DNA MER1_type 25 65 -276 1841 142 0 21 chr1 18167769 18168088 -224496265 - AluJb SINE Alu 0 313 1 445 262 68 44 chr1 18168088 18168250 -224496103 + Charlie8 DNA MER1_type 65 235 -106 336 335 108 0 chr1 18169376 18169543 -224494810 + MIR SINE MIR 46 230 -32 598 252 26 0 chr1 18170439 18170590 -224493763 + MER45A DNA AcHobo 24 178 0 322 294 67 17 chr1 18170636 18170755 -224493598 - MIR SINE MIR -61 147 23 181 292 0 0 chr1 18170965 18171013 -224493340 + MIR SINE MIR 104 151 -57 250 304 63 0 chr1 18171529 18171608 -224492745 - L3b LINE CR1 -197 1386 1303 2155 97 3 29 chr1 18172100 18172409 -224491944 - AluSx SINE Alu -7 305 5 202 194 0 0 chr1 18172853 18172889 -224491464 + (CTCA)n Simple_repeat Simple_repeat 1 36 0 183 310 23 35 chr1 18172997 18173084 -224491269 + MIR SINE MIR 51 136 -72 227 320 117 5 chr1 18174203 18174409 -224489944 + L2 LINE L2 2835 3063 -250 411 348 71 9 chr1 18175774 18175984 -224488369 + L2 LINE L2 3077 3299 -14 2317 63 0 20 chr1 18176262 18176565 -224487788 - AluY SINE Alu -14 297 1 251 283 0 0 chr1 18177592 18177652 -224486701 + L2 LINE L2 3254 3313 0 180 316 26 26 chr1 18177827 18177903 -224486450 + L2 LINE L2 3195 3270 -2 325 315 107 0 chr1 18177947 18178096 -224486257 - MIR SINE MIR -74 188 24 238 255 0 0 chr1 18178510 18178557 -224485796 - L2 LINE L2 -5 3267 3221 368 184 0 138 chr1 18179236 18179308 -224485045 + MIR3 SINE MIR 81 135 -73 1166 177 22 9 chr1 18179308 18179534 -224484819 + L1MB7 LINE L1 5956 6184 0 368 184 0 138 chr1 18179534 18179570 -224484783 + MIR3 SINE MIR 135 174 -34 584 318 27 9 chr1 18179642 18179862 -224484491 - MIR SINE MIR -37 225 2 2009 102 29 0 chr1 18180111 18180428 -224483925 + AluY SINE Alu 1 325 0 2415 92 0 6 chr1 18180458 18180772 -224483581 + AluSx SINE Alu 1 312 0 218 329 24 0 chr1 18180829 18180914 -224483439 - L2 LINE L2 -47 3266 3180 377 307 176 8 chr1 18181022 18181347 -224483006 - L2 LINE L2 -321 2992 2624 355 265 109 41 chr1 18182127 18182274 -224482079 + MIR3 SINE MIR 20 176 -32 567 328 39 26 chr1 18182309 18182538 -224481815 + MIR SINE MIR 2 233 -29 290 359 55 7 chr1 18183210 18183355 -224480998 + MIR3 SINE MIR 48 199 -9 330 331 90 0 chr1 18183624 18183769 -224480584 - MIR SINE MIR -59 203 46 269 329 94 28 chr1 18185562 18185775 -224478578 - L2 LINE L2 -427 2887 2661 363 348 77 23 chr1 18185950 18186171 -224478182 + MIR SINE MIR 21 253 -9 612 331 95 14 chr1 18186303 18186599 -224477754 - L2 LINE L2 0 3313 2994 547 297 7 7 chr1 18186953 18187101 -224477252 - MIR SINE MIR -56 206 59 181 354 10 40 chr1 18187536 18187635 -224476718 + MIR SINE MIR 52 147 -61 409 318 128 9 chr1 18187849 18188060 -224476293 - MIR SINE MIR -12 250 15 531 322 128 37 chr1 18188303 18188889 -224475464 - L2 LINE L2 0 3313 2640 1959 129 10 22 chr1 18188889 18189200 -224475153 + AluJb SINE Alu 1 307 -5 2162 134 0 0 chr1 18189212 18189517 -224474836 + AluSx SINE Alu 1 305 -7 740 269 78 59 chr1 18189593 18190002 -224474351 - MER96B DNA MER1_type 0 417 1 265 341 23 15 chr1 18191167 18191299 -224473054 + MIR SINE MIR 116 248 -14 256 290 20 40 chr1 18191750 18191850 -224472503 + MIR SINE MIR 162 259 -3 574 294 19 6 chr1 18192472 18192632 -224471721 + MIR3 SINE MIR 15 176 -32 339 253 23 0 chr1 18193014 18193101 -224471252 + MIR SINE MIR 61 149 -59 298 283 17 75 chr1 18193215 18193335 -224471018 - MER5A DNA MER1_type -10 179 67 200 271 34 0 chr1 18193596 18193655 -224470698 - L2 LINE L2 -5 3267 3207 479 148 11 0 chr1 18194002 18194090 -224470263 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 713 158 7 0 chr1 18194107 18194246 -224470107 + (TCCA)n Simple_repeat Simple_repeat 2 141 0 205 294 106 0 chr1 18194246 18194331 -224470022 - L2 LINE L2 0 3313 3220 181 234 106 0 chr1 18195631 18195678 -224468675 - L3 LINE CR1 -99 1478 1427 281 372 115 8 chr1 18195700 18195934 -224468419 + MIR SINE MIR 1 259 -3 1282 246 124 3 chr1 18196723 18197093 -224467260 - MLT1C LTR MaLR -52 415 1 195 307 53 27 chr1 18197144 18197219 -224467134 - MIR3 SINE MIR -20 188 112 831 323 82 15 chr1 18197365 18197767 -224466586 - L2 LINE L2 -12 3301 2873 188 260 156 0 chr1 18198674 18198751 -224465602 - MIR3 SINE MIR -13 195 107 454 304 123 0 chr1 18199039 18199210 -224465143 + MIR SINE MIR 6 197 -65 411 306 33 0 chr1 18199690 18199811 -224464542 - MIR3 SINE MIR 0 208 84 2159 82 28 0 chr1 18199857 18200139 -224464214 - AluSx SINE Alu -22 290 1 224 366 52 6 chr1 18200660 18200854 -224463499 + MIR3 SINE MIR 3 205 -57 414 256 40 0 chr1 18200878 18201003 -224463350 + MIR SINE MIR 78 207 -55 359 269 83 24 chr1 18201037 18201264 -224463089 - MIR SINE MIR -9 253 11 2168 110 0 7 chr1 18202034 18202342 -224462011 + AluSx SINE Alu 4 309 -3 608 259 9 60 chr1 18202444 18202660 -224461693 - MIR3 SINE MIR -1 207 3 391 306 30 101 chr1 18202660 18202920 -224461433 + L2 LINE L2 3032 3272 0 218 239 14 0 chr1 18202920 18202991 -224461362 + GA-rich Low_complexity Low_complexity 1 72 0 184 301 169 0 chr1 18204077 18204160 -224460193 - MIR3 SINE MIR 0 208 112 2021 192 31 94 chr1 18204401 18204953 -224459400 - MLT2B1 LTR ERVL 0 520 4 209 255 47 66 chr1 18205983 18206089 -224458264 - L2 LINE L2 -37 3235 3132 483 364 22 22 chr1 18206644 18206872 -224457481 + MIR SINE MIR 34 261 -1 1076 197 34 4 chr1 18208050 18208284 -224456069 - MIR SINE MIR -6 256 16 220 217 116 0 chr1 18208404 18208473 -224455880 + L2 LINE L2 3170 3246 -26 270 278 32 136 chr1 18208479 18208824 -224455529 - L2 LINE L2 -42 3230 2922 442 300 96 9 chr1 18209526 18209746 -224454607 + L2 LINE L2 2907 3145 -168 288 269 25 67 chr1 18210489 18210608 -224453745 + L2 LINE L2 3149 3262 -10 233 381 0 0 chr1 18212188 18212285 -224452068 + MIR SINE MIR 141 237 -25 277 325 159 8 chr1 18212465 18212591 -224451762 + MIR SINE MIR 117 261 -1 1880 183 35 12 chr1 18213381 18213720 -224450633 + MER7A DNA MER2_type 2 346 0 504 328 0 0 chr1 18214145 18214325 -224450028 + (TG)n Simple_repeat Simple_repeat 1 180 0 238 400 0 0 chr1 18214424 18214594 -224449759 + (TG)n Simple_repeat Simple_repeat 1 170 0 339 374 0 0 chr1 18214657 18214820 -224449533 + (TG)n Simple_repeat Simple_repeat 1 163 0 285 366 6 0 chr1 18214919 18215083 -224449270 + (TG)n Simple_repeat Simple_repeat 1 165 0 * 312 335 6 6 chr1 18214999 18215175 -224449178 + G-rich Low_complexity Low_complexity 3 178 0 344 329 20 40 chr1 18216339 18216488 -224447865 - MIR SINE MIR -10 252 107 243 0 0 0 chr1 18216709 18216736 -224447617 + (AGCTG)n Simple_repeat Simple_repeat 1 27 0 2208 110 3 0 chr1 18217125 18217426 -224446927 - AluSq SINE Alu -11 302 1 190 280 0 0 chr1 18217873 18217923 -224446430 - MIR SINE MIR -118 144 95 240 283 101 29 chr1 18218085 18218122 -224446231 + MIR SINE MIR 6 39 -223 554 248 9 0 chr1 18218122 18218235 -224446118 + MER81 DNA DNA 1 114 0 240 283 101 29 chr1 18218235 18218335 -224446018 + MIR SINE MIR 39 153 -109 330 299 110 32 chr1 18218425 18218579 -224445774 + MIR SINE MIR 47 212 -50 255 74 0 56 chr1 18218764 18218818 -224445535 + (CCCTG)n Simple_repeat Simple_repeat 3 53 0 205 250 38 50 chr1 18219317 18219397 -224444956 - MIR SINE MIR -77 185 107 23 0 0 0 chr1 18219451 18219474 -224444879 + AT_rich Low_complexity Low_complexity 1 23 0 2028 109 42 0 chr1 18219495 18219780 -224444573 - AluSq SINE Alu -16 297 1 1713 303 105 24 chr1 18219789 18220871 -224443482 - L1MC4 LINE L1 0 8042 6873 274 355 135 15 chr1 18220896 18221237 -224443116 - L1MC4a LINE L1 -1150 6658 6277 346 232 12 0 chr1 18221241 18221323 -224443030 - MER58A DNA MER1_type -19 88 6 249 33 0 0 chr1 18222325 18222355 -224441998 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 180 111 0 0 chr1 18223531 18223558 -224440795 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 768 272 197 21 chr1 18223898 18224434 -224439919 + L2 LINE L2 2671 3311 -2 347 262 49 49 chr1 18224758 18224880 -224439473 - L1MDa LINE L1 -4041 2499 2378 231 301 150 0 chr1 18225027 18225140 -224439213 - L2 LINE L2 0 3272 3143 311 256 0 12 chr1 18225694 18225780 -224438573 - HAL1 LINE L1 -178 2329 2245 605 247 109 0 chr1 18225924 18226098 -224438255 - MER63A DNA MER1_type -15 195 3 186 314 0 43 chr1 18226596 18226666 -224437687 - MIR3 SINE MIR -133 75 9 332 343 83 22 chr1 18227703 18227884 -224436469 - MIR SINE MIR -48 214 23 270 287 148 0 chr1 18227907 18228029 -224436324 + MIR SINE MIR 51 190 -72 180 103 35 0 chr1 18228245 18228274 -224436079 + CT-rich Low_complexity Low_complexity 3 32 0 294 374 15 46 chr1 18228599 18228794 -224435559 - MIR SINE MIR -55 207 19 * 338 318 38 38 chr1 18228739 18228871 -224435482 + MIR3 SINE MIR 28 159 -49 304 309 15 66 chr1 18230337 18230473 -224433880 - L1MDa LINE L1 -4384 2156 2028 237 65 0 0 chr1 18230473 18230504 -224433849 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 440 288 124 6 chr1 18230506 18230683 -224433670 - L2 LINE L2 0 3313 3116 785 316 161 16 chr1 18230974 18231644 -224432709 + L2 LINE L2 2273 3043 -229 648 209 7 0 chr1 18231792 18231931 -224432422 - MER3 DNA MER1_type -56 153 14 249 322 35 0 chr1 18231931 18232018 -224432335 + L2 LINE L2 3194 3283 -30 207 296 99 0 chr1 18232405 18232486 -224431867 + MER5A DNA MER1_type 3 91 -98 523 208 152 0 chr1 18232794 18232919 -224431434 - MER7A DNA MER2_type -204 142 1 513 290 35 0 chr1 18232919 18233064 -224431289 - MIR SINE MIR -105 157 8 197 286 0 0 chr1 18234112 18234161 -224430192 + MIR SINE MIR 107 155 -107 2088 99 3 54 chr1 18234563 18234877 -224429476 + AluSx SINE Alu 1 298 -14 276 371 111 19 chr1 18234931 18235246 -224429107 - L2 LINE L2 -1 3271 2928 235 302 23 0 chr1 18236366 18236452 -224427901 + (TG)n Simple_repeat Simple_repeat 2 89 0 495 253 96 6 chr1 18236667 18236845 -224427508 - MER3 DNA MER1_type 0 209 16 296 341 165 6 chr1 18237404 18237574 -224426779 - L2 LINE L2 0 3272 3076 226 321 14 64 chr1 18237978 18238118 -224426235 + MIR SINE MIR 20 152 -56 406 337 72 10 chr1 18238557 18238750 -224425603 - MIR SINE MIR -51 211 7 747 268 145 25 chr1 18238855 18239213 -224425140 - L2 LINE L2 -2 3311 2911 1532 270 168 22 chr1 18239240 18240084 -224424269 - L2 LINE L2 -550 2764 1798 2158 96 17 0 chr1 18240701 18240993 -224423360 - AluSx SINE Alu -15 297 1 640 263 48 0 chr1 18241698 18241884 -224422469 - LTR16C LTR ERVL -22 469 275 1360 216 52 55 chr1 18242175 18242383 -224421970 - MLT1A1 LTR MaLR 0 365 157 2226 100 0 19 chr1 18242383 18242692 -224421661 - AluSx SINE Alu -9 303 1 1360 216 52 55 chr1 18242692 18242849 -224421504 - MLT1A1 LTR MaLR -208 157 1 1889 158 64 25 chr1 18242941 18243118 -224421235 + THE1C LTR MaLR 1 170 -205 2334 76 0 3 chr1 18243118 18243419 -224420934 - AluY SINE Alu -11 300 1 1889 158 64 25 chr1 18243419 18243602 -224420751 + THE1C LTR MaLR 170 375 0 197 333 178 22 chr1 18243659 18243749 -224420604 - L2 LINE L2 -23 3249 3146 353 277 80 0 chr1 18243828 18243965 -224420388 + MIR SINE MIR 34 181 -81 351 105 0 0 chr1 18244166 18244223 -224420130 + (CTGGGG)n Simple_repeat Simple_repeat 1 57 0 1112 164 25 5 chr1 18244618 18244819 -224419534 - AluJo SINE Alu -107 205 1 219 328 0 0 chr1 18245588 18245655 -224418698 + MIR SINE MIR 36 102 -106 468 228 56 3 chr1 18245730 18245892 -224418461 - MIR SINE MIR -62 146 16 409 317 56 0 chr1 18246019 18246161 -224418192 + MIR SINE MIR 111 260 -2 2104 114 7 0 chr1 18246264 18246561 -224417792 - AluSx SINE Alu -12 300 2 360 212 66 73 chr1 18246827 18246964 -224417389 - L2 LINE L2 -4 3268 3133 1777 170 6 3 chr1 18246978 18247313 -224417040 + AluJo SINE Alu 1 336 0 397 307 50 7 chr1 18247407 18247547 -224416806 + MIR SINE MIR 105 250 -12 1987 71 0 8 chr1 18247554 18247844 -224416509 - AluY SINE Alu 0 311 37 522 330 33 14 chr1 18248735 18248790 -224415563 - MIR SINE MIR -15 247 195 2172 162 162 2 chr1 18248790 18249209 -224415144 - LTR19A LTR ERV1 0 486 1 522 330 33 14 chr1 18249209 18249365 -224414988 - MIR SINE MIR -67 195 32 650 259 239 39 chr1 18249738 18250178 -224414175 + MLT1H1 LTR MaLR 4 531 -24 1005 274 65 40 chr1 18250276 18250721 -224413632 + MLT1K LTR MaLR 122 577 -11 449 281 22 15 chr1 18251673 18251808 -224412545 - MIR3 SINE MIR -59 149 14 347 287 11 0 chr1 18251990 18252077 -224412276 + MIR SINE MIR 36 123 -85 346 308 111 34 chr1 18252220 18252275 -224412078 - MIR SINE MIR -13 249 200 2261 103 6 0 chr1 18252275 18252586 -224411767 - AluSq SINE Alu 0 313 1 346 308 111 34 chr1 18252586 18252738 -224411615 - MIR SINE MIR -62 200 26 270 81 0 0 chr1 18253622 18253659 -224410694 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 338 289 0 21 chr1 18253692 18253789 -224410564 - L2 LINE L2 -29 3284 3190 446 270 104 13 chr1 18253913 18254096 -224410257 - MIR SINE MIR -60 202 6 625 261 18 0 chr1 18254509 18254674 -224409679 - MIR SINE MIR -80 182 15 1680 167 0 46 chr1 18254753 18255077 -224409276 + AluJo SINE Alu 1 309 -3 750 104 8 22 chr1 18255318 18255452 -224408901 + (TTCC)n Simple_repeat Simple_repeat 2 133 0 1903 136 30 0 chr1 18255452 18255754 -224408599 - AluSx SINE Alu -1 311 1 250 247 49 49 chr1 18255837 18255918 -224408435 + L2 LINE L2 3137 3217 -55 337 209 7 122 chr1 18256644 18256783 -224407570 - LTR16A1 LTR ERVL -70 387 265 459 339 66 16 chr1 18257095 18257278 -224407075 - MIR SINE MIR -19 243 52 226 185 0 56 chr1 18257335 18257389 -224406964 - L2 LINE L2 -192 3080 3030 204 370 0 0 chr1 18257436 18257517 -224406836 - L2 LINE L2 -2 3311 3231 447 65 0 0 chr1 18257714 18257776 -224406577 + L1PB1 LINE L1 6089 6150 -1 180 0 0 0 chr1 18257808 18257828 -224406525 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 195 308 77 8 chr1 18257887 18258004 -224406349 - MIR SINE MIR -78 184 60 270 322 17 26 chr1 18258356 18258471 -224405882 + MIR SINE MIR 30 143 -65 204 345 12 24 chr1 18258694 18258778 -224405575 + MIR SINE MIR 50 132 -76 245 269 77 58 chr1 18259355 18259511 -224404842 + MIR SINE MIR 21 179 -83 615 261 20 64 chr1 18259802 18260063 -224404290 - MIR SINE MIR -2 260 5 974 255 55 51 chr1 18260149 18260577 -224403776 - MLT1K LTR MaLR -17 571 126 225 290 43 0 chr1 18260678 18260747 -224403606 - MIR SINE MIR -92 170 99 360 324 57 62 chr1 18260894 18260990 -224403363 + L1ME LINE L1 5389 5484 -637 2162 98 0 0 chr1 18260990 18261311 -224403042 + AluSp SINE Alu 1 321 0 360 324 57 62 chr1 18261311 18261565 -224402788 + L1ME LINE L1 5484 5738 -383 659 303 131 0 chr1 18262277 18262498 -224401855 - MIR SINE MIR 0 262 13 350 316 97 0 chr1 18262913 18263068 -224401285 - MIR SINE MIR -42 220 51 2295 101 3 0 chr1 18263280 18263587 -224400766 + AluSq SINE Alu 1 308 -5 409 333 13 7 chr1 18263611 18263761 -224400592 + MIR SINE MIR 3 153 -109 317 263 171 16 chr1 18263819 18264007 -224400346 - MIR SINE MIR -13 249 19 1976 144 0 0 chr1 18264209 18264501 -224399852 - AluSx SINE Alu -20 292 1 290 286 19 38 chr1 18264812 18264917 -224399436 - LTR16C LTR ERVL -2 489 387 2325 186 57 15 chr1 18265255 18265729 -224398624 + LTR42 LTR ERVL 2 495 0 1965 145 0 0 chr1 18265892 18266181 -224398172 - AluSx SINE Alu -23 289 1 1098 80 23 6 chr1 18266265 18266440 -224397913 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 318 50 0 0 chr1 18266443 18266483 -224397870 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 1232 201 43 23 chr1 18266483 18266538 -224397815 - AluJo SINE Alu -2 310 258 2799 79 3 6 chr1 18266538 18266894 -224397459 - THE1A LTR MaLR 0 355 1 1232 201 43 23 chr1 18266894 18267142 -224397211 - AluJo SINE Alu -54 258 1 379 355 28 0 chr1 18267152 18267293 -224397060 - MIR SINE MIR -70 192 48 296 295 20 86 chr1 18267796 18267960 -224396393 - MIR3 SINE MIR -29 179 28 298 276 41 8 chr1 18268450 18268573 -224395780 + MIR3 SINE MIR 70 196 -12 643 313 17 26 chr1 18268847 18269077 -224395276 + MIR SINE MIR 7 234 -28 976 260 75 41 chr1 18269095 18269556 -224394797 + MLT1H LTR MaLR 1 549 0 259 273 52 13 chr1 18269591 18269668 -224394685 + MIR SINE MIR 64 143 -65 390 335 94 0 chr1 18269721 18269912 -224394441 + MIR SINE MIR 33 241 -21 354 194 63 19 chr1 18269912 18270026 -224394327 - MLT1G3 LTR MaLR 0 595 497 539 219 117 63 chr1 18270126 18270354 -224393999 - MLT1G3 LTR MaLR -138 417 149 1944 98 11 0 chr1 18270362 18270626 -224393727 + AluSx SINE Alu 14 280 -32 279 0 0 0 chr1 18270630 18270661 -224393692 + (CA)n Simple_repeat Simple_repeat 2 32 0 1398 65 0 0 chr1 18270662 18270832 -224393521 + AluY SINE Alu 1 170 -141 1511 71 0 38 chr1 18270832 18271044 -224393309 + AluSg/x SINE Alu 107 310 -2 250 246 0 0 chr1 18271138 18271195 -224393158 - MLT1G3 LTR MaLR -459 83 27 265 230 14 54 chr1 18271258 18271332 -224393021 + MIR3 SINE MIR 130 200 -8 453 192 20 20 chr1 18271671 18271770 -224392583 - MIR SINE MIR -136 126 28 399 236 35 37 chr1 18271943 18272086 -224392267 + MIR SINE MIR 15 150 -58 420 316 58 21 chr1 18272828 18273018 -224391335 - MIR SINE MIR -16 246 50 2025 111 0 20 chr1 18273031 18273337 -224391016 + AluSx SINE Alu 13 312 0 404 279 49 0 chr1 18273355 18273477 -224390876 - MIR3 SINE MIR -15 193 66 586 301 78 53 chr1 18274001 18274397 -224389956 + L2 LINE L2 2854 3259 -13 453 367 31 0 chr1 18274803 18275029 -224389324 - MIR SINE MIR -12 250 18 455 352 56 13 chr1 18276059 18276292 -224388061 + MIR SINE MIR 20 262 0 254 243 43 0 chr1 18276331 18276401 -224387952 - MIR SINE MIR -75 133 61 785 158 8 8 chr1 18276401 18276534 -224387819 - AluJo SINE Alu -178 134 2 413 269 0 10 chr1 18276585 18276689 -224387664 + MIR SINE MIR 41 143 -65 279 357 29 14 chr1 18276728 18276868 -224387485 - MIR3 SINE MIR -13 195 54 2300 85 7 0 chr1 18277083 18277388 -224386965 + AluSc SINE Alu 1 307 -2 839 186 114 0 chr1 18277887 18278054 -224386299 - MER5A DNA MER1_type -3 186 1 486 256 85 43 chr1 18278073 18278237 -224386116 - MER5B DNA MER1_type -4 174 4 210 260 104 26 chr1 18278444 18278521 -224385832 - L2 LINE L2 -45 3227 3145 189 0 0 0 chr1 18278904 18278925 -224385428 + (TC)n Simple_repeat Simple_repeat 2 22 0 1795 156 0 7 chr1 18278925 18279214 -224385139 - AluJo SINE Alu -23 289 3 390 74 0 0 chr1 18279808 18279862 -224384491 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 229 276 92 0 chr1 18279887 18279963 -224384390 - L2 LINE L2 -68 3204 3122 203 189 0 0 chr1 18280742 18280779 -224383574 + L3b LINE CR1 1349 1385 -198 2047 123 19 3 chr1 18280779 18281087 -224383266 + AluSq SINE Alu 1 313 0 895 215 56 33 chr1 18281260 18281474 -224382879 - MER58A DNA MER1_type 0 224 6 258 246 0 0 chr1 18281898 18281959 -224382394 + G-rich Low_complexity Low_complexity 4 64 0 389 295 155 36 chr1 18282658 18282851 -224381502 + MIR SINE MIR 6 221 -41 347 273 41 33 chr1 18283017 18283138 -224381215 + L2 LINE L2 3191 3312 -1 438 250 69 0 chr1 18283847 18283963 -224380390 - MIR SINE MIR -79 183 60 257 391 20 20 chr1 18284187 18284338 -224380015 + MIR3 SINE MIR 58 208 0 506 276 59 13 chr1 18284610 18284762 -224379591 + MIR SINE MIR 8 166 -96 3381 71 32 2 chr1 18284762 18285226 -224379127 + LTR8 LTR ERV1 110 587 -104 240 111 0 0 chr1 18285226 18285271 -224379082 + (A)n Simple_repeat Simple_repeat 1 45 0 209 213 115 0 chr1 18285273 18285334 -224379019 + MIR SINE MIR 151 218 -44 1613 160 42 29 chr1 18285412 18285725 -224378628 - MLT1B LTR MaLR -73 317 1 298 289 0 52 chr1 18285725 18285812 -224378541 + Charlie8 DNA MER1_type 191 272 -2145 390 213 138 0 chr1 18285815 18285909 -224378444 + MER81 DNA DNA 1 107 -7 2092 124 7 0 chr1 18285912 18286211 -224378142 - AluSx SINE Alu -8 304 4 277 322 183 0 chr1 18286829 18286944 -224377409 + MIR SINE MIR 28 163 -99 2392 73 0 6 chr1 18287031 18287344 -224377009 - AluY SINE Alu 0 311 1 356 209 0 0 chr1 18287346 18287413 -224376940 - MER5A DNA MER1_type -115 74 8 349 256 6 11 chr1 18287505 18287685 -224376668 + (CAT)n Simple_repeat Simple_repeat 1 179 0 197 207 52 35 chr1 18287737 18287795 -224376558 - MIR SINE MIR -60 148 90 211 299 0 52 chr1 18287831 18287908 -224376445 + MIR3 SINE MIR 11 83 -125 234 211 123 0 chr1 18287928 18287985 -224376368 - MIR3 SINE MIR -28 180 117 612 292 102 38 chr1 18288002 18288141 -224376212 + MIR SINE MIR 1 163 -99 2063 223 70 49 chr1 18288141 18288670 -224375683 + MLT1F LTR MaLR 1 540 -2 612 292 102 38 chr1 18288670 18288766 -224375587 + MIR SINE MIR 163 251 -11 306 50 0 0 chr1 18289051 18289091 -224375262 + (TG)n Simple_repeat Simple_repeat 2 41 0 431 262 48 8 chr1 18289530 18289656 -224374697 - MIR3 SINE MIR -36 172 42 479 294 8 0 chr1 18290253 18290379 -224373974 - MIR SINE MIR -116 146 20 247 387 54 0 chr1 18290404 18290497 -224373856 - L2 LINE L2 -29 3243 3146 244 193 76 109 chr1 18290513 18290632 -224373721 - MLT1I LTR MaLR -17 392 278 432 254 52 46 chr1 18290726 18290899 -224373454 - MLT1H LTR MaLR -328 221 48 585 175 98 28 chr1 18290989 18291132 -224373221 - HsTC2 DNA Tc2 0 1898 1746 706 250 34 0 chr1 18291143 18291319 -224373034 - HsTC2 DNA Tc2 -1715 183 2 516 298 22 57 chr1 18291320 18291469 -224372884 - MIR SINE MIR -12 250 110 2469 183 34 13 chr1 18291469 18291945 -224372408 + MER66B LTR ERV1 1 486 0 516 298 22 57 chr1 18291945 18292023 -224372330 - MIR SINE MIR -152 110 31 378 220 25 59 chr1 18292057 18292175 -224372178 + MIR SINE MIR 113 226 -36 2534 101 25 6 chr1 18292390 18292747 -224371606 - THE1B LTR MaLR 0 364 1 437 141 12 0 chr1 18292804 18292889 -224371464 - L1ME2 LINE L1 0 6164 6079 364 226 0 24 chr1 18293813 18293897 -224370456 - MIR SINE MIR -61 147 66 1611 213 71 42 chr1 18294172 18294474 -224369879 - MLT1C LTR MaLR 0 467 175 2322 112 3 0 chr1 18294474 18294777 -224369576 + AluSg SINE Alu 1 304 -6 2220 138 3 0 chr1 18294781 18295086 -224369267 + AluSx SINE Alu 1 306 -6 1611 213 71 42 chr1 18295086 18295229 -224369124 - MLT1C LTR MaLR -294 173 4 189 328 104 16 chr1 18295229 18295354 -224368999 + MIR SINE MIR 55 190 -72 793 258 10 0 chr1 18295975 18296173 -224368180 + MIR SINE MIR 57 256 -6 2499 57 9 31 chr1 18296176 18296494 -224367859 - AluY SINE Alu 0 311 1 365 245 152 40 chr1 18297429 18297580 -224366773 + MIR SINE MIR 91 258 -4 439 208 17 0 chr1 18297591 18297711 -224366642 + (TGG)n Simple_repeat Simple_repeat 1 122 0 213 39 0 0 chr1 18298456 18298482 -224365871 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 273 283 111 10 chr1 18298487 18298586 -224365767 - L2 LINE L2 -18 3295 3187 608 329 72 30 chr1 18299175 18299660 -224364693 + L2 LINE L2 2764 3272 0 315 203 0 0 chr1 18299660 18299734 -224364619 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 202 293 162 0 chr1 18300309 18300408 -224363945 - MIR SINE MIR -116 146 32 216 280 217 7 chr1 18301542 18301685 -224362668 + MIR3 SINE MIR 27 199 -9 420 231 109 34 chr1 18302398 18302449 -224361904 - MIR SINE MIR 0 262 216 2384 81 5 51 chr1 18302449 18302491 -224361862 - THE1A LTR MaLR 0 355 313 2359 112 0 0 chr1 18302491 18302794 -224361559 + AluSx SINE Alu 1 303 -9 2384 81 5 51 chr1 18302794 18303123 -224361230 - THE1A LTR MaLR -42 313 1 420 231 109 34 chr1 18303123 18303218 -224361135 - MIR SINE MIR -46 216 105 283 237 145 40 chr1 18303337 18303489 -224360864 - L2 LINE L2 -215 3057 2890 302 254 40 92 chr1 18304032 18304205 -224360148 - MIR3 SINE MIR -35 173 10 225 339 0 0 chr1 18304244 18304309 -224360044 + CT-rich Low_complexity Low_complexity 3 67 0 417 255 99 14 chr1 18304955 18305096 -224359257 + MIR SINE MIR 31 183 -79 180 200 0 0 chr1 18305150 18305190 -224359163 + (CTG)n Simple_repeat Simple_repeat 2 41 0 244 340 53 0 chr1 18305232 18305326 -224359027 + L2 LINE L2 3215 3313 0 394 223 58 0 chr1 18305910 18306037 -224358316 - MIR SINE MIR -62 146 48 188 210 32 32 chr1 18306474 18306536 -224357817 + MIR SINE MIR 85 146 -62 1466 256 85 24 chr1 18306548 18307009 -224357344 + MLT1D LTR MaLR 16 504 -1 275 200 0 12 chr1 18307214 18307294 -224357059 + C-rich Low_complexity Low_complexity 4 82 0 430 273 25 0 chr1 18307320 18307441 -224356912 + MER5B DNA MER1_type 1 124 -54 909 232 189 12 chr1 18307442 18307701 -224356652 - AluSp SINE Alu -8 305 1 236 255 0 0 chr1 18307710 18307761 -224356592 + MER5B DNA MER1_type 124 174 -4 1832 266 37 19 chr1 18307838 18308405 -224355948 + MLT1K LTR MaLR 12 588 0 2298 89 0 17 chr1 18308467 18308795 -224355558 + AluSc SINE Alu 1 309 0 227 227 106 0 chr1 18309296 18309362 -224354991 + MIR SINE MIR 53 125 -137 482 269 167 16 chr1 18309381 18309567 -224354786 - MLT1K LTR MaLR -371 217 4 318 50 0 0 chr1 18309650 18309690 -224354663 + (TG)n Simple_repeat Simple_repeat 1 40 0 444 330 25 20 chr1 18310213 18310410 -224353943 + MIR SINE MIR 17 214 -48 468 277 21 50 chr1 18311074 18311215 -224353138 - MIR3 SINE MIR -59 149 13 1377 52 0 0 chr1 18311265 18311439 -224352914 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 12574 194 24 13 chr1 18311479 18315306 -224349047 + L1PA16 LINE L1 2300 6161 -5 2429 125 14 16 chr1 18315314 18315746 -224348607 - L1MB2 LINE L1 -7 6164 5734 523 234 39 0 chr1 18315756 18315884 -224348469 + MIR SINE MIR 53 185 -77 1133 240 33 102 chr1 18315889 18316369 -224347984 + LTR16A1 LTR ERVL 7 453 -4 280 245 10 51 chr1 18316369 18316467 -224347886 - MIR SINE MIR -5 257 164 681 204 84 7 chr1 18316547 18316689 -224347664 + MLT1A2 LTR MaLR 180 332 -42 217 257 162 0 chr1 18316897 18316971 -224347382 + MIR3 SINE MIR 77 162 -46 687 295 5 0 chr1 18316971 18317161 -224347192 + MER117 DNA MER1_type 2 192 -5 968 290 133 19 chr1 18317384 18317805 -224346548 + MLT1K LTR MaLR 76 544 -44 182 303 151 8 chr1 18318172 18318291 -224346062 - MIR3 SINE MIR -69 139 4 185 240 60 0 chr1 18318374 18318424 -224345929 + MIR SINE MIR 201 253 -9 257 330 59 17 chr1 18318447 18318565 -224345788 - LTR16C LTR ERVL 0 491 369 2363 205 14 27 chr1 18318585 18319097 -224345256 + MLT1F LTR MaLR 9 513 -29 233 381 52 6 chr1 18319156 18319329 -224345024 - LTR16C LTR ERVL -193 298 118 228 313 20 0 chr1 18319521 18319620 -224344733 + (TGAG)n Simple_repeat Simple_repeat 1 101 0 782 168 0 7 chr1 18319719 18319856 -224344497 + MLT1F LTR MaLR 299 434 -108 295 296 9 28 chr1 18320401 18320508 -224343845 - MIR SINE MIR -62 146 54 227 309 73 9 chr1 18320640 18320750 -224343603 + MIR3 SINE MIR 45 161 -47 289 289 52 30 chr1 18320864 18320999 -224343354 - MIR SINE MIR -87 175 38 802 303 107 29 chr1 18321145 18321558 -224342795 - MLT1K LTR MaLR -3 585 141 413 228 32 24 chr1 18321642 18321765 -224342588 - MIR SINE MIR -70 192 69 185 333 11 0 chr1 18322079 18322169 -224342184 - L2 LINE L2 -217 3055 2965 671 220 5 70 chr1 18322275 18322475 -224341878 + MIR SINE MIR 52 238 -24 198 268 70 14 chr1 18322592 18322663 -224341690 + MIR SINE MIR 3 77 -185 219 270 16 0 chr1 18322700 18322763 -224341590 + MIR SINE MIR 176 239 -23 331 291 8 26 chr1 18322837 18322954 -224341399 - MLT1K LTR MaLR -392 196 82 828 210 87 10 chr1 18322977 18323172 -224341181 + MER58C DNA MER1_type 6 215 0 865 206 178 52 chr1 18323297 18323685 -224340668 - LTR33A LTR ERVL 0 523 87 883 247 134 21 chr1 18324168 18324541 -224339812 + MER113 DNA MER1_type? 38 452 -69 455 122 100 11 chr1 18324570 18324660 -224339693 + MER4A LTR ERV1 1 98 -566 2235 110 10 3 chr1 18324755 18325056 -224339297 + AluSq SINE Alu 7 309 -4 1215 134 10 29 chr1 18325058 18325313 -224339040 + MER4B LTR ERV1 381 620 -44 1379 95 0 0 chr1 18325313 18325482 -224338871 - AluSc SINE Alu -17 292 124 353 127 0 0 chr1 18325482 18325537 -224338816 + MER4A LTR ERV1 610 664 0 687 292 55 8 chr1 18326139 18326375 -224337978 - MIR SINE MIR -14 248 2 233 250 21 0 chr1 18326987 18327083 -224337270 + CT-rich Low_complexity Low_complexity 4 101 0 986 95 34 14 chr1 18327148 18327295 -224337058 + THE1B LTR MaLR 1 150 -214 721 233 27 0 chr1 18327910 18328060 -224336293 + MIR SINE MIR 88 241 -21 543 305 17 11 chr1 18328292 18328466 -224335887 + MIR SINE MIR 79 253 -9 337 252 114 8 chr1 18328834 18328957 -224335396 - MIR SINE MIR -118 144 9 524 113 31 21 chr1 18329161 18329258 -224335095 + MER4A LTR ERV1 1 98 -566 1764 153 173 9 chr1 18329258 18329605 -224334748 + MER4A LTR ERV1 261 664 0 180 298 0 0 chr1 18329867 18329914 -224334439 - L2 LINE L2 -2885 429 383 455 292 124 26 chr1 18330245 18330478 -224333875 + MIR SINE MIR 7 262 0 1153 270 93 27 chr1 18331854 18332262 -224332091 - LTR16A LTR ERVL 0 450 16 955 243 33 16 chr1 18332674 18332917 -224331436 + MIR SINE MIR 6 252 -10 1830 155 3 44 chr1 18332958 18333274 -224331079 - AluJo SINE Alu -9 303 1 292 271 12 12 chr1 18334497 18334582 -224329771 - MIR SINE MIR -147 115 31 473 244 110 24 chr1 18334609 18334773 -224329580 + MIR3 SINE MIR 20 197 -11 1046 251 154 40 chr1 18335982 18336369 -224327984 + L2 LINE L2 2762 3216 -97 2457 64 0 3 chr1 18336369 18336665 -224327688 - AluY SINE Alu -16 295 1 1046 251 154 40 chr1 18336665 18336776 -224327577 + L2 LINE L2 3216 3313 0 425 339 8 0 chr1 18336955 18337082 -224327271 - L2 LINE L2 -3 3269 3142 444 118 0 0 chr1 18338099 18338167 -224326186 + (TCCA)n Simple_repeat Simple_repeat 2 69 0 375 258 104 108 chr1 18338167 18338435 -224325918 - L2 LINE L2 0 3272 3006 624 228 13 7 chr1 18338567 18338716 -224325637 + MLT1K LTR MaLR 122 271 -317 355 417 25 0 chr1 18338778 18338941 -224325412 + MIR3 SINE MIR 19 185 -23 314 270 90 0 chr1 18339804 18339893 -224324460 - MIR SINE MIR -83 125 29 184 125 0 31 chr1 18340527 18340559 -224323794 + L2 LINE L2 3265 3295 -18 784 235 3 21 chr1 18340772 18340993 -224323360 - MIR SINE MIR 0 262 49 1042 178 0 0 chr1 18342241 18342404 -224321949 - AluJb SINE Alu -1 311 149 280 250 15 0 chr1 18342404 18342472 -224321881 + MIR SINE MIR 160 228 -34 372 339 119 18 chr1 18342641 18342859 -224321494 + MIR SINE MIR 20 259 -3 234 309 43 11 chr1 18343036 18343130 -224321223 + MIR SINE MIR 110 206 -56 207 322 44 11 chr1 18343221 18343311 -224321042 - L2 LINE L2 -19 3294 3202 350 277 27 0 chr1 18343630 18343742 -224320611 - MARNA DNA Mariner -337 249 135 456 255 143 25 chr1 18344394 18344555 -224319798 + MIR SINE MIR 83 262 0 263 309 10 10 chr1 18344710 18344807 -224319546 - L2 LINE L2 -57 3256 3160 582 268 45 17 chr1 18344836 18345015 -224319338 + L2 LINE L2 3130 3313 0 429 243 75 0 chr1 18345405 18345540 -224318813 + MIR SINE MIR 45 189 -64 366 331 30 56 chr1 18345546 18345757 -224318596 + MIR SINE MIR 1 205 -57 2629 89 6 3 chr1 18345757 18346118 -224318235 - THE1B LTR MaLR -2 362 1 366 331 30 56 chr1 18346118 18346175 -224318178 + MIR SINE MIR 205 262 0 180 0 0 0 chr1 18346254 18346274 -224318079 + (TTG)n Simple_repeat Simple_repeat 2 21 0 301 301 0 0 chr1 18346462 18346535 -224317818 - MIR SINE MIR -110 152 80 234 218 45 113 chr1 18346674 18346807 -224317546 - MIR SINE MIR -70 192 69 309 232 30 61 chr1 18347426 18347525 -224316828 + MIR SINE MIR 167 262 0 211 93 0 56 chr1 18347682 18347736 -224316617 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 630 275 135 5 chr1 18348400 18348607 -224315746 - MIR SINE MIR -21 241 8 982 182 0 0 chr1 18348635 18348789 -224315564 + FRAM SINE Alu 5 158 -18 253 232 51 0 chr1 18348904 18348992 -224315361 - MIR SINE MIR -59 149 100 380 219 8 0 chr1 18349499 18349622 -224314731 + CT-rich Low_complexity Low_complexity 3 126 0 618 89 0 0 chr1 18349627 18349717 -224314636 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 286 240 93 156 chr1 18349757 18349830 -224314523 + L2 LINE L2 3103 3179 -134 2060 100 53 47 chr1 18349830 18350014 -224314339 + THE1B LTR MaLR 1 192 -172 2249 108 7 3 chr1 18350014 18350372 -224313981 + AluSp SINE Alu 1 359 0 2060 100 53 47 chr1 18350372 18350543 -224313810 + THE1B LTR MaLR 192 361 -3 455 0 18 0 chr1 18350543 18350598 -224313755 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 286 240 93 156 chr1 18350598 18350748 -224313605 + L2 LINE L2 3177 3313 0 229 294 49 55 chr1 18351032 18351195 -224313158 + L2 LINE L2 2895 3056 -216 2365 110 0 0 chr1 18351383 18351692 -224312661 - AluY SINE Alu -2 309 1 697 276 77 10 chr1 18351744 18351940 -224312413 - MIR SINE MIR -25 237 29 276 355 0 8 chr1 18351954 18352075 -224312278 + MIR3 SINE MIR 82 201 -7 434 273 57 54 chr1 18352267 18352613 -224311740 + MLT1H LTR MaLR 1 379 -170 2286 111 10 0 chr1 18352898 18353195 -224311158 - AluSx SINE Alu -12 300 1 1942 205 101 5 chr1 18353829 18354244 -224310109 - MLT1D LTR MaLR -48 457 3 193 233 17 55 chr1 18354278 18354375 -224309978 - MIR SINE MIR -102 160 32 289 297 103 9 chr1 18354511 18354625 -224309728 - MIR SINE MIR -66 142 40 1621 204 44 42 chr1 18354633 18355089 -224309264 + LTR16A1 LTR ERVL 1 457 0 1703 272 54 33 chr1 18355092 18355736 -224308617 - MLT2F LTR ERVL -2 661 4 6399 270 56 48 chr1 18355738 18358345 -224306008 - ERVL-F LTR ERVL -7 5757 3132 718 337 4 4 chr1 18358350 18358599 -224305754 - ERVL LTR ERVL -4430 1334 1086 281 200 14 0 chr1 18358619 18358690 -224305663 - MLT2E LTR ERVL -548 80 8 588 148 0 0 chr1 18358906 18358994 -224305359 + AluJ/FLAM SINE Alu 6 93 -219 185 0 40 0 chr1 18358997 18359022 -224305331 + (TAA)n Simple_repeat Simple_repeat 2 27 0 377 271 158 0 chr1 18359069 18359230 -224305123 - MIR SINE MIR -44 218 37 1478 223 82 75 chr1 18360092 18360629 -224303724 - L2 LINE L2 0 3313 2781 1853 176 40 0 chr1 18360629 18360925 -224303428 - AluJb SINE Alu -2 310 3 1523 135 0 5 chr1 18360927 18361149 -224303204 - AluJb SINE Alu -11 301 81 1478 223 82 75 chr1 18361149 18361484 -224302869 - L2 LINE L2 -532 2781 2421 462 234 23 99 chr1 18361504 18361675 -224302678 + MIR SINE MIR 61 218 -44 209 32 0 32 chr1 18361684 18361715 -224302638 + (TTA)n Simple_repeat Simple_repeat 2 31 0 306 250 284 23 chr1 18361742 18361793 -224302560 + MER58A DNA MER1_type 3 39 -2381 2624 71 0 0 chr1 18361793 18362101 -224302252 + AluY SINE Alu 1 308 -3 306 250 284 23 chr1 18362101 18362225 -224302128 + MER58A DNA MER1_type 39 224 0 202 323 0 0 chr1 18362905 18362967 -224301386 + L2 LINE L2 3210 3271 -1 296 303 10 0 chr1 18363300 18363399 -224300954 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1301 115 0 0 chr1 18363704 18363869 -224300484 - AluSc SINE Alu -21 288 124 2266 85 7 3 chr1 18363869 18364162 -224300191 - AluY SINE Alu -17 294 1 244 183 0 28 chr1 18364179 18364250 -224300103 + CT-rich Low_complexity Low_complexity 5 73 0 697 156 0 64 chr1 18364257 18364398 -224299955 - FLAM_C SINE Alu -1 132 1 221 218 41 3 chr1 18364415 18364476 -224299877 + MIR SINE MIR 74 137 -71 600 214 162 7 chr1 18364856 18365010 -224299343 - MER45A DNA AcHobo 0 178 1 694 239 58 5 chr1 18365030 18365267 -224299086 + MIR SINE MIR 14 261 -1 469 337 146 5 chr1 18366208 18366618 -224297735 - L2 LINE L2 -531 2783 2316 839 281 126 17 chr1 18367071 18367540 -224296813 - LTR33 LTR ERVL -1 520 1 2168 108 10 0 chr1 18367587 18367920 -224296433 + AluSx SINE Alu 1 336 0 2343 119 0 0 chr1 18368743 18369053 -224295300 - AluSg SINE Alu 0 310 1 406 273 26 12 chr1 18369265 18369453 -224294900 + MIR SINE MIR 29 259 -3 384 227 62 32 chr1 18369482 18369637 -224294716 - MIR SINE MIR -62 146 16 2152 65 0 129 chr1 18370266 18370606 -224293747 - AluY SINE Alu -15 296 1 473 302 0 44 chr1 18370619 18370801 -224293552 - MIR3 SINE MIR -17 191 18 951 219 68 0 chr1 18370876 18371095 -224293258 - MIR SINE MIR 0 262 29 263 280 83 51 chr1 18371392 18371549 -224292804 + MIR3 SINE MIR 30 191 -17 245 376 30 8 chr1 18372304 18372437 -224291916 + MIR SINE MIR 47 182 -80 1860 148 133 21 chr1 18372625 18373010 -224291343 + MSTA LTR MaLR 1 428 0 302 95 111 32 chr1 18373598 18373661 -224290692 + MADE1 DNA Mariner 9 76 -4 369 344 6 12 chr1 18373690 18373853 -224290500 - MIR3 SINE MIR -7 201 40 198 286 0 0 chr1 18373905 18373954 -224290399 + L2 LINE L2 3186 3234 -38 265 223 32 21 chr1 18374414 18374508 -224289845 + L2 LINE L2 2965 3059 -213 229 315 0 0 chr1 18375093 18375158 -224289195 + MIR SINE MIR 85 143 -65 347 318 68 26 chr1 18375256 18375520 -224288833 + L2 LINE L2 2630 2904 -410 833 284 61 37 chr1 18375681 18376009 -224288344 + MLT1H1 LTR MaLR 37 375 -215 663 230 153 89 chr1 18376200 18376617 -224287736 + MLT1J1 LTR MaLR 3 446 0 410 304 24 8 chr1 18376878 18377003 -224287350 + L2 LINE L2 3143 3269 -3 306 240 53 13 chr1 18377837 18377912 -224286441 - MIR SINE MIR -72 190 113 227 293 146 0 chr1 18378277 18378359 -224285994 + MLT1H1 LTR MaLR 454 547 -2 2323 102 0 3 chr1 18378649 18378944 -224285409 + AluSg1 SINE Alu 1 294 -15 419 216 18 13 chr1 18378959 18379068 -224285285 - MIR3 SINE MIR -48 160 57 1778 141 92 0 chr1 18379106 18379390 -224284963 + AluSg SINE Alu 1 310 0 424 285 20 40 chr1 18379578 18379778 -224284575 + MLT1K LTR MaLR 359 554 -34 268 264 118 27 chr1 18380060 18380170 -224284183 + MIR3 SINE MIR 65 184 -24 296 262 83 60 chr1 18380204 18380372 -224283981 + L2 LINE L2 2920 3091 -181 216 67 0 0 chr1 18381029 18381059 -224283294 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 296 234 31 0 chr1 18381059 18381123 -224283230 - L2 LINE L2 0 3313 3248 329 298 32 16 chr1 18381151 18381275 -224283078 - MIR SINE MIR -135 127 2 189 232 0 0 chr1 18381380 18381449 -224282904 + (TTCA)n Simple_repeat Simple_repeat 1 69 0 660 283 95 68 chr1 18382287 18382622 -224281731 - Charlie8 DNA MER1_type -1925 492 141 2006 156 0 0 chr1 18382622 18382642 -224281711 - AluJb SINE Alu -5 307 288 665 24 12 0 chr1 18382642 18382725 -224281628 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 2006 156 0 0 chr1 18382725 18383011 -224281342 - AluJb SINE Alu -23 289 1 660 283 95 68 chr1 18383011 18383116 -224281237 - Charlie8 DNA MER1_type -2276 141 40 841 283 74 14 chr1 18383277 18383627 -224280726 - MLT1H LTR MaLR -178 371 1 239 291 25 25 chr1 18383633 18383712 -224280641 + MIR3 SINE MIR 90 168 -40 698 103 16 0 chr1 18384158 18384284 -224280069 + (TCCA)n Simple_repeat Simple_repeat 3 130 0 2509 80 0 0 chr1 18384288 18384589 -224279764 - AluY SINE Alu -10 301 1 181 301 72 78 chr1 18386421 18386511 -224277842 + MIR SINE MIR 27 117 -145 1634 161 45 0 chr1 18386511 18386678 -224277675 - AluJo SINE Alu -13 299 112 288 0 0 0 chr1 18386678 18386710 -224277643 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1634 161 45 0 chr1 18386710 18386828 -224277525 - AluJo SINE Alu -200 112 1 181 301 72 78 chr1 18386828 18386890 -224277463 + MIR SINE MIR 117 178 -84 358 299 41 0 chr1 18386902 18386999 -224277354 - MER91C DNA MER1_type -39 101 1 522 263 18 23 chr1 18387152 18387323 -224277030 + MIR SINE MIR 87 256 -6 390 74 0 0 chr1 18388569 18388623 -224275730 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 222 276 92 0 chr1 18388648 18388724 -224275629 - L2 LINE L2 -68 3204 3122 205 189 0 0 chr1 18389503 18389540 -224274813 + L3b LINE CR1 1349 1385 -198 2057 133 20 3 chr1 18389540 18389841 -224274512 + AluSx SINE Alu 1 306 -6 2200 141 3 0 chr1 18389845 18390150 -224274203 + AluSx SINE Alu 1 306 -6 600 183 127 0 chr1 18390151 18390293 -224274060 - MLT1C LTR MaLR -304 163 4 189 328 104 16 chr1 18390293 18390418 -224273935 + MIR SINE MIR 55 190 -72 225 355 10 0 chr1 18391038 18391235 -224273118 + MIR SINE MIR 57 255 -7 1672 133 0 35 chr1 18391421 18391676 -224272677 - AluSx SINE Alu -66 246 1 710 259 101 20 chr1 18392329 18392576 -224271777 + L2 LINE L2 3046 3312 -1 500 274 101 6 chr1 18392543 18392711 -224271642 - MIR SINE MIR -50 212 29 * 21 0 0 0 chr1 18393015 18393036 -224271317 + AT_rich Low_complexity Low_complexity 1 21 0 369 345 17 17 chr1 18393099 18393218 -224271135 + MIR SINE MIR 24 142 -120 949 271 155 8 chr1 18393237 18393599 -224270754 + MLT1J LTR MaLR 19 433 -78 344 274 43 34 chr1 18394438 18394555 -224269798 - MIR3 SINE MIR -20 188 71 2160 116 10 26 chr1 18394688 18394991 -224269362 + AluSq SINE Alu 3 300 -13 750 268 106 0 chr1 18395135 18395333 -224269020 + MIR SINE MIR 43 261 -1 521 172 124 2 chr1 18395479 18395627 -224268726 - MLT1J2 LTR MaLR -239 211 38 252 292 163 11 chr1 18395655 18395833 -224268520 + MIR SINE MIR 48 252 -10 271 250 22 22 chr1 18395834 18395926 -224268427 + CT-rich Low_complexity Low_complexity 5 96 0 590 308 54 13 chr1 18396451 18396675 -224267678 - MIR SINE MIR -2 260 28 238 252 26 35 chr1 18396717 18396832 -224267521 + L2 LINE L2 2917 3030 -242 757 171 11 0 chr1 18397108 18397283 -224267070 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 1946 133 35 11 chr1 18397323 18397670 -224266683 + L1MB3 LINE L1 5827 6181 -2 702 261 55 10 chr1 18397920 18398119 -224266234 - MIR SINE MIR -45 217 10 695 172 71 12 chr1 18398294 18398463 -224265890 + MER96B DNA MER1_type? 1 179 -238 539 309 20 20 chr1 18398636 18398840 -224265513 + MIR SINE MIR 21 224 -38 216 309 30 53 chr1 18399720 18399876 -224264477 - MIR SINE MIR -72 190 40 307 365 30 12 chr1 18400093 18400260 -224264093 - MIR3 SINE MIR -3 205 36 211 264 72 50 chr1 18400283 18400452 -224263901 + MIR SINE MIR 33 206 -56 531 292 57 83 chr1 18400591 18400892 -224263461 + L2 LINE L2 2966 3258 -14 259 293 136 14 chr1 18401953 18402100 -224262253 + MLT1H LTR MaLR 372 536 -13 181 267 67 0 chr1 18402173 18402233 -224262120 + MIR SINE MIR 29 92 -116 187 311 22 11 chr1 18402435 18402525 -224261828 - MIR SINE MIR -2 260 170 482 177 53 18 chr1 18402532 18402645 -224261708 + L2 LINE L2 3192 3308 -5 1052 172 49 5 chr1 18402756 18402959 -224261394 + MER20 DNA MER1_type 8 219 0 1144 237 108 45 chr1 18403035 18403242 -224261111 - MLT1D LTR MaLR 0 505 313 2119 118 36 36 chr1 18403242 18403606 -224260747 - THE1B LTR MaLR 0 364 1 1144 237 108 45 chr1 18403606 18403870 -224260483 - MLT1D LTR MaLR -192 313 4 234 289 67 0 chr1 18403925 18404015 -224260338 - MIR SINE MIR -77 185 90 448 213 5 122 chr1 18404625 18404644 -224259709 - L1MA10 LINE L1 0 6334 6316 3283 221 21 53 chr1 18404644 18405245 -224259108 - L1ME1 LINE L1 -10 6225 5679 1718 159 63 30 chr1 18405245 18405546 -224258807 + AluJo SINE Alu 2 312 0 3283 221 21 53 chr1 18405546 18406086 -224258267 - L1ME1 LINE L1 -556 5679 5123 866 248 10 0 chr1 18406070 18406268 -224258085 - L1ME1 LINE L1 -6153 243 44 * 301 331 12 60 chr1 18406370 18406536 -224257817 - MIR SINE MIR -82 180 23 376 147 15 0 chr1 18407069 18407137 -224257216 + L1MA5A LINE L1 5883 5951 -346 233 163 23 0 chr1 18407168 18407211 -224257142 - MER117 DNA MER1_type -144 53 10 732 374 108 18 chr1 18407236 18407864 -224256489 - L3 LINE CR1 -96 1481 797 712 262 144 0 chr1 18407946 18408175 -224256178 - MIR SINE MIR 0 262 1 705 249 226 24 chr1 18408620 18409041 -224255312 + MLT1K LTR MaLR 76 581 -7 269 278 69 0 chr1 18409148 18409220 -224255133 - L2 LINE L2 -47 3225 3149 578 192 54 129 chr1 18409427 18409651 -224254702 + MIR SINE MIR 43 249 -13 318 280 9 9 chr1 18410544 18410651 -224253702 + (CTCA)n Simple_repeat Simple_repeat 2 108 0 1625 141 65 73 chr1 18411112 18411453 -224252900 + THE1C LTR MaLR 3 340 -35 1808 157 64 0 chr1 18411459 18411740 -224252613 - AluSx SINE Alu -13 299 1 1653 177 63 46 chr1 18412104 18412561 -224251792 - MLT1C LTR MaLR -2 465 1 2671 88 8 8 chr1 18413253 18413627 -224250726 - THE1C LTR MaLR 0 375 2 213 336 55 31 chr1 18414101 18414229 -224250124 + L2 LINE L2 3138 3268 -4 1878 149 0 3 chr1 18414248 18414560 -224249793 + AluSx SINE Alu 3 313 0 1401 139 48 0 chr1 18414903 18415111 -224249242 - AluJo SINE Alu -10 302 85 206 297 0 31 chr1 18415216 18415280 -224249073 - L2 LINE L2 -4 3309 3248 327 259 53 46 chr1 18415318 18415449 -224248904 - L1ME4a LINE L1 -130 5991 5860 311 314 57 8 chr1 18415450 18415574 -224248779 - MIR SINE MIR -62 200 71 230 359 69 0 chr1 18415664 18415795 -224248558 + MIR SINE MIR 108 247 -15 524 241 183 0 chr1 18416052 18416243 -224248110 + MIR SINE MIR 16 241 -21 1279 140 30 47 chr1 18416631 18416944 -224247409 - L1MB8 LINE L1 -13 6167 5858 274 239 172 30 chr1 18416971 18417105 -224247248 - MIR3 SINE MIR -37 171 19 201 163 0 0 chr1 18417199 18417248 -224247105 + CT-rich Low_complexity Low_complexity 2 50 0 368 295 192 29 chr1 18417262 18417642 -224246711 - L2 LINE L2 -37 3276 2835 2130 114 0 0 chr1 18417845 18418162 -224246191 + AluSx SINE Alu 1 317 0 609 337 36 4 chr1 18418827 18419076 -224245277 - MIR SINE MIR 0 262 6 2061 124 3 51 chr1 18419187 18419502 -224244851 + AluSx SINE Alu 1 300 -12 496 315 27 0 chr1 18420530 18420679 -224243674 - MIR SINE MIR -98 164 12 236 378 66 20 chr1 18420914 18421065 -224243288 - L2 LINE L2 0 3272 3115 246 231 0 0 chr1 18421773 18421825 -224242528 - L2 LINE L2 -344 2969 2918 277 284 39 0 chr1 18421865 18421967 -224242386 + MLT1I LTR MaLR 16 121 -288 350 255 3 24 chr1 18422098 18422195 -224242158 + MLT1H LTR MaLR 454 538 -11 199 371 19 9 chr1 18422249 18422354 -224241999 - L2 LINE L2 -433 2881 2776 243 257 86 19 chr1 18422361 18422466 -224241887 - MIR SINE MIR -63 145 34 224 318 35 0 chr1 18422573 18422658 -224241695 - MIR3 SINE MIR -48 160 73 496 320 115 35 chr1 18423257 18423623 -224240730 + MLT1I LTR MaLR 13 407 -2 230 250 42 0 chr1 18423640 18423712 -224240641 - MER103 DNA DNA -21 145 71 300 357 24 8 chr1 18423724 18423850 -224240503 + L1M4 LINE L1 3073 3200 -2946 264 115 16 33 chr1 18423851 18423912 -224240441 + (GAAAA)n Simple_repeat Simple_repeat 4 63 0 182 356 93 0 chr1 18424144 18424262 -224240091 + MIR3 SINE MIR 2 130 -78 1980 107 6 89 chr1 18425131 18425549 -224238804 + AluJb SINE Alu 1 390 0 402 140 11 32 chr1 18425981 18426074 -224238279 + GA-rich Low_complexity Low_complexity 2 92 0 286 274 39 78 chr1 18427215 18427368 -224236985 - MLT1K LTR MaLR -10 578 432 1088 280 68 38 chr1 18427421 18427821 -224236532 - MLT1K LTR MaLR -157 431 20 294 314 12 0 chr1 18428118 18428204 -224236149 + L2 LINE L2 3187 3273 -40 2550 61 0 0 chr1 18428261 18428588 -224235765 + L1PA6 LINE L1 5821 6147 -7 598 350 74 24 chr1 18428662 18429082 -224235271 - L3 LINE CR1 -295 1282 842 589 242 52 69 chr1 18429157 18429219 -224235134 - MIR SINE MIR -16 246 184 2058 120 76 3 chr1 18429219 18429510 -224234843 - AluSp SINE Alu -1 312 1 589 242 52 69 chr1 18429510 18429678 -224234675 - MIR SINE MIR -78 184 20 345 280 87 0 chr1 18430644 18430821 -224233532 + MIR SINE MIR 31 225 -37 324 261 54 9 chr1 18430875 18430986 -224233367 - MIR SINE MIR -119 143 28 458 324 54 51 chr1 18431569 18431839 -224232514 + L2 LINE L2 2952 3225 -88 2644 88 0 24 chr1 18431839 18432212 -224232141 - THE1B LTR MaLR 0 364 1 458 324 54 51 chr1 18432212 18432293 -224232060 + L2 LINE L2 3225 3304 -9 282 282 8 26 chr1 18433695 18433812 -224230541 + (ATGGTG)n Simple_repeat Simple_repeat 1 115 0 327 301 80 88 chr1 18434261 18434510 -224229843 + L2 LINE L2 3008 3254 -18 1675 176 24 40 chr1 18434558 18434934 -224229419 - MLT1A2 LTR MaLR -1 373 4 407 279 91 19 chr1 18435450 18435604 -224228749 - L2 LINE L2 0 3272 3108 333 259 288 0 chr1 18435678 18435817 -224228536 + MIR SINE MIR 7 185 -77 2192 136 0 25 chr1 18435835 18436151 -224228202 + AluSx SINE Alu 1 308 -4 186 219 0 24 chr1 18436433 18436474 -224227879 + L2 LINE L2 3136 3175 -97 255 182 18 0 chr1 18437024 18437079 -224227274 + MIR SINE MIR 82 137 -71 238 36 0 0 chr1 18437573 18437601 -224226752 + (TC)n Simple_repeat Simple_repeat 1 28 0 885 173 3 10 chr1 18437601 18437890 -224226463 + CT-rich Low_complexity Low_complexity 1 287 0 360 0 0 0 chr1 18437893 18437933 -224226420 + (CA)n Simple_repeat Simple_repeat 2 41 0 480 274 76 83 chr1 18438046 18438455 -224225898 + MLT1I LTR MaLR 3 408 -1 544 332 58 5 chr1 18439554 18439777 -224224576 - MIR SINE MIR -21 241 7 256 355 99 0 chr1 18439786 18439927 -224224426 - MIR3 SINE MIR -27 181 27 180 0 0 0 chr1 18440428 18440448 -224223905 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1391 102 4 59 chr1 18440448 18440494 -224223859 + L1PB1 LINE L1 5928 5975 -176 1924 84 114 0 chr1 18440494 18440757 -224223596 + AluSg SINE Alu 1 293 -17 1391 102 4 59 chr1 18440757 18440946 -224223407 + L1PB1 LINE L1 5975 6150 -1 2205 145 80 10 chr1 18441415 18441815 -224222538 - MSTA LTR MaLR 0 428 1 477 256 267 11 chr1 18442184 18442375 -224221978 - MIR SINE MIR -1 261 22 699 323 15 37 chr1 18442450 18442778 -224221575 - L3 LINE CR1 -79 1498 1178 321 343 42 55 chr1 18442788 18443024 -224221329 - L1ME3 LINE L1 -2 6160 5928 1060 276 49 38 chr1 18443039 18443484 -224220869 - L1ME3A LINE L1 -208 5962 5513 2195 99 7 40 chr1 18443516 18443818 -224220535 - AluSq SINE Alu -21 292 1 231 286 40 56 chr1 18444165 18444291 -224220062 + MLT1H LTR MaLR 51 174 -375 230 321 64 21 chr1 18444364 18444504 -224219849 + MLT1H LTR MaLR 403 548 -1 484 310 13 7 chr1 18444565 18444720 -224219633 - MIR SINE MIR -85 177 22 381 319 42 24 chr1 18445002 18445231 -224219122 + MIR SINE MIR 27 261 -1 2451 84 7 0 chr1 18447131 18447430 -224216923 + AluSq SINE Alu 3 303 -10 284 295 58 87 chr1 18447793 18448000 -224216353 - MIR SINE MIR -60 202 2 293 292 18 35 chr1 18448618 18448731 -224215622 - MIR SINE MIR -63 145 35 245 246 0 0 chr1 18449010 18449067 -224215286 - MIR SINE MIR -7 255 199 295 370 46 27 chr1 18450147 18450366 -224213987 + L2 LINE L2 2866 3088 -184 186 333 36 24 chr1 18450447 18450531 -224213822 - L2 LINE L2 -27 3245 3161 195 194 0 0 chr1 18450897 18450933 -224213420 + MIR SINE MIR 111 146 -116 698 314 30 11 chr1 18451261 18451396 -224212957 - L2 LINE L2 0 3313 3182 948 63 14 7 chr1 18451396 18451538 -224212815 + (TCTA)n Simple_repeat Simple_repeat 1 143 0 698 314 30 11 chr1 18451538 18451673 -224212680 - L2 LINE L2 -131 3182 3038 456 182 10 10 chr1 18451672 18451771 -224212582 - MIR SINE MIR -62 200 102 * 251 305 0 12 chr1 18452436 18452518 -224211835 - MIR SINE MIR 0 262 182 679 229 179 15 chr1 18452549 18452750 -224211603 + MIR SINE MIR 29 262 0 746 283 118 25 chr1 18452806 18453212 -224211141 - L2 LINE L2 -3 3310 2867 241 340 132 6 chr1 18453708 18453867 -224210486 - MIR SINE MIR -14 248 70 294 290 56 19 chr1 18454302 18454409 -224209944 + L2 LINE L2 3197 3307 -6 711 282 57 40 chr1 18454410 18454475 -224209878 - MIR SINE MIR 0 262 200 486 281 11 28 chr1 18454475 18454653 -224209700 - MER5B DNA MER1_type -2 176 2 711 282 57 40 chr1 18454653 18454814 -224209539 - MIR SINE MIR -62 200 32 381 43 0 0 chr1 18455267 18455314 -224209039 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 278 310 50 0 chr1 18456040 18456140 -224208213 + MIR SINE MIR 30 134 -128 221 239 0 45 chr1 18456307 18456374 -224207979 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 684 191 0 0 chr1 18556960 18557133 -224107220 + (CCA)n Simple_repeat Simple_repeat 1 173 0 181 237 0 21 chr1 18557160 18557253 -224107100 + (CCA)n Simple_repeat Simple_repeat 1 91 0 406 252 81 0 chr1 18557296 18557407 -224106946 - MIR SINE MIR -26 236 117 450 157 0 0 chr1 18559123 18559206 -224105147 + (CACCAT)n Simple_repeat Simple_repeat 4 86 0 688 139 23 17 chr1 18559221 18559394 -224104959 + (CACCAT)n Simple_repeat Simple_repeat 3 176 0 860 127 7 45 chr1 18559409 18559982 -224104371 + (CACCAT)n Simple_repeat Simple_repeat 1 551 0 870 182 0 0 chr1 18560006 18560364 -224103989 + (CCA)n Simple_repeat Simple_repeat 1 358 0 954 101 0 43 chr1 18560372 18560560 -224103793 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 857 145 17 0 chr1 18560594 18560766 -224103587 + (CACCAT)n Simple_repeat Simple_repeat 5 179 0 227 364 18 9 chr1 18561283 18561393 -224102960 + MIR SINE MIR 74 184 -78 681 328 21 12 chr1 18561516 18561757 -224102596 - MIR SINE MIR 0 262 20 206 267 13 13 chr1 18562875 18562950 -224101403 + (CCCA)n Simple_repeat Simple_repeat 2 76 0 198 233 0 0 chr1 18563007 18563067 -224101286 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 495 48 0 0 chr1 18563144 18563206 -224101147 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 190 238 0 131 chr1 18563345 18563429 -224100924 - L2 LINE L2 -184 3088 3016 196 365 14 0 chr1 18563507 18563581 -224100772 - L2 LINE L2 -64 3208 3134 194 276 171 16 chr1 18563902 18564025 -224100328 + MIR3 SINE MIR 7 148 -60 1131 151 33 5 chr1 18564789 18565001 -224099352 + MER20 DNA MER1_type 1 218 -1 325 332 112 31 chr1 18565894 18566180 -224098173 - L2 LINE L2 0 3313 3005 2452 68 3 16 chr1 18567290 18567600 -224096753 + AluY SINE Alu 1 306 -5 186 327 0 37 chr1 18568705 18568812 -224095541 - MIR SINE MIR -54 208 106 387 133 214 127 chr1 18569573 18569746 -224094607 + MER53 DNA DNA 2 189 0 1992 127 25 32 chr1 18569802 18570116 -224094237 + AluSx SINE Alu 1 312 0 264 154 15 31 chr1 18570125 18570190 -224094163 + T-rich Low_complexity Low_complexity 2 65 0 246 164 0 0 chr1 18570392 18570447 -224093906 + CT-rich Low_complexity Low_complexity 1 55 0 276 273 0 39 chr1 18570484 18570561 -224093792 - L2 LINE L2 -6 3307 3234 380 319 14 7 chr1 18570691 18570835 -224093518 - MIR3 SINE MIR -48 160 16 308 155 0 17 chr1 18572354 18572412 -224091941 + MIR SINE MIR 76 132 -76 429 339 18 12 chr1 18573662 18573830 -224090523 - L3 LINE CR1 -114 1463 1295 365 321 0 0 chr1 18573913 18574022 -224090331 - MER81 DNA DNA -5 109 1 209 231 15 46 chr1 18574209 18574274 -224090079 + MIR SINE MIR 36 98 -164 560 264 71 30 chr1 18574451 18574470 -224089883 + MIR SINE MIR 46 63 -199 1930 124 16 72 chr1 18574470 18574856 -224089497 - THE1B LTR MaLR 0 364 1 560 264 71 30 chr1 18574856 18575033 -224089320 + MIR SINE MIR 63 250 -12 2229 107 17 0 chr1 18575543 18575834 -224088519 - AluSx SINE Alu -6 306 11 576 0 0 0 chr1 18575835 18575899 -224088454 + (TTTCC)n Simple_repeat Simple_repeat 1 64 0 859 54 20 34 chr1 18575900 18576049 -224088304 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 216 260 0 65 chr1 18576431 18576508 -224087845 + MIR SINE MIR 46 117 -91 214 320 27 27 chr1 18576627 18576702 -224087651 - L2 LINE L2 -48 3224 3150 945 204 87 0 chr1 18576967 18577173 -224087180 + MER58A DNA MER1_type 1 224 0 2150 139 13 3 chr1 18577249 18577558 -224086795 + AluSx SINE Alu 1 312 0 506 285 15 0 chr1 18577560 18577697 -224086656 - MER45A DNA AcHobo -7 171 33 322 304 43 43 chr1 18578353 18578583 -224085770 + LTR33 LTR ERVL 292 521 0 910 272 104 39 chr1 18578695 18579129 -224085224 - MLT1H1 LTR MaLR -93 462 1 229 298 113 24 chr1 18579529 18579653 -224084700 + MIR3 SINE MIR 12 146 -62 198 271 168 9 chr1 18579678 18579785 -224084568 + MIR SINE MIR 23 146 -62 272 254 0 0 chr1 18579939 18579998 -224084355 + L2 LINE L2 3206 3264 -8 1493 255 33 43 chr1 18580029 18580538 -224083815 + L1ME2 LINE L1 5651 6154 -10 360 0 0 0 chr1 18580708 18580748 -224083605 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2286 94 0 3 chr1 18580750 18581037 -224083316 - AluSx SINE Alu -26 286 1 21 57 0 0 chr1 18581045 18581080 -224083273 + AT_rich Low_complexity Low_complexity 1 35 0 393 272 103 46 chr1 18581151 18581279 -224083074 + MIR SINE MIR 7 151 -111 1643 174 43 46 chr1 18581279 18581670 -224082683 + MLT1B LTR MaLR 1 390 0 393 272 103 46 chr1 18581670 18581736 -224082617 + MIR SINE MIR 151 212 -50 670 277 106 39 chr1 18581819 18582339 -224082014 - MLT1L LTR MaLR -31 584 6 378 320 193 0 chr1 18582365 18582562 -224081791 - MIR SINE MIR -24 238 4 977 270 8 15 chr1 18583304 18583563 -224080790 + MIR SINE MIR 6 262 0 281 299 0 0 chr1 18583563 18583630 -224080723 + MER5A DNA MER1_type 91 157 -32 230 0 33 0 chr1 18584606 18584636 -224079717 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 735 299 62 54 chr1 18584948 18585336 -224079017 + MLT1I LTR MaLR 19 409 0 6652 57 9 0 chr1 18585563 18586861 -224077492 - L1PA8 LINE L1 -16 6156 4863 1042 125 16 52 chr1 18587155 18587347 -224077006 + MLT2C2 LTR ERVL 1 185 -279 303 241 111 9 chr1 18587435 18587543 -224076810 + MLT1J2 LTR MaLR 294 412 -38 * 744 142 55 119 chr1 18587540 18587583 -224076770 + MLT2C1 LTR ERVL 183 227 -170 2251 131 3 0 chr1 18587583 18587889 -224076464 + AluSx SINE Alu 1 307 -5 744 142 55 119 chr1 18587889 18588064 -224076289 + MLT2C1 LTR ERVL 227 387 -10 362 208 0 14 chr1 18588122 18588194 -224076159 + MER117 DNA MER1_type 38 108 -89 358 312 8 48 chr1 18588208 18588333 -224076020 + L2 LINE L2 3194 3313 0 288 258 73 73 chr1 18588388 18588512 -224075841 - MIR SINE MIR -63 145 22 221 246 15 15 chr1 18588970 18589035 -224075318 + L2 LINE L2 3248 3312 -1 332 344 89 11 chr1 18589344 18589524 -224074829 + MIR SINE MIR 50 243 -19 683 224 6 0 chr1 18589987 18590161 -224074192 + (TG)n Simple_repeat Simple_repeat 2 176 0 213 39 0 0 chr1 18590459 18590485 -224073868 + (CA)n Simple_repeat Simple_repeat 1 26 0 422 306 65 52 chr1 18591144 18591376 -224072977 - L2 LINE L2 -38 3234 3000 472 282 129 6 chr1 18591392 18591562 -224072791 - MIR SINE MIR -1 261 71 315 308 15 53 chr1 18592112 18592184 -224072169 + MIR SINE MIR 26 92 -170 2083 116 99 42 chr1 18592184 18592589 -224071764 - MSTA LTR MaLR 0 428 1 315 308 15 53 chr1 18592589 18592649 -224071704 + MIR SINE MIR 92 153 -109 278 288 105 27 chr1 18592972 18593191 -224071162 + MLT1K LTR MaLR 335 570 -18 717 302 46 62 chr1 18593496 18593626 -224070727 - L2 LINE L2 -452 2862 2731 1975 166 3 0 chr1 18593626 18593928 -224070425 - AluSx SINE Alu -9 303 1 717 302 46 62 chr1 18593928 18594042 -224070311 - L2 LINE L2 -583 2731 2617 3189 178 2 2 chr1 18594042 18594599 -224069754 + MER41D LTR ERV1 1 557 0 717 302 46 62 chr1 18594599 18594849 -224069504 - L2 LINE L2 -697 2617 2375 1632 166 0 68 chr1 18594970 18595278 -224069075 - AluJb SINE Alu -25 287 1 396 0 0 0 chr1 18595837 18595881 -224068472 + (CA)n Simple_repeat Simple_repeat 2 45 0 421 303 151 0 chr1 18596033 18596185 -224068168 - MER96 DNA MER1_type? 0 175 1 210 346 37 37 chr1 18596269 18596350 -224068003 + MIR SINE MIR 107 187 -75 521 221 10 0 chr1 18596393 18596497 -224067856 - MIR SINE MIR -109 153 49 1788 190 52 24 chr1 18596680 18597049 -224067304 - MER74A LTR ERVL -9 549 171 192 171 98 0 chr1 18597123 18597164 -224067189 - MIR SINE MIR -6 256 212 673 142 122 40 chr1 18597200 18597348 -224067005 - MER74B LTR ERVL -407 215 56 793 274 34 0 chr1 18597632 18597836 -224066517 + MIR SINE MIR 2 212 -50 207 188 0 0 chr1 18598603 18598651 -224065702 + (CA)n Simple_repeat Simple_repeat 2 49 0 341 343 107 21 chr1 18598651 18598940 -224065413 - L1MC4a LINE L1 -1880 5928 5615 234 0 0 0 chr1 18598947 18598973 -224065380 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 227 347 0 0 chr1 18598975 18599047 -224065306 - L2 LINE L2 -16 3297 3226 329 358 51 28 chr1 18599100 18599276 -224065077 - L1MC4a LINE L1 -2211 5597 5418 381 311 34 34 chr1 18599378 18599526 -224064827 - MIR SINE MIR -102 160 13 2422 93 0 0 chr1 18599530 18599832 -224064521 + AluSg SINE Alu 3 304 -6 272 296 61 8 chr1 18599987 18600119 -224064234 + MIR SINE MIR 119 257 -5 1691 189 3 20 chr1 18600136 18600468 -224063885 + AluJo SINE Alu 3 312 0 222 217 116 78 chr1 18601265 18601394 -224062959 - L2 LINE L2 -880 2434 2301 2167 126 10 0 chr1 18601472 18601766 -224062587 - AluSx SINE Alu -15 297 1 207 250 0 0 chr1 18602366 18602410 -224061943 + MIR SINE MIR 115 158 -104 706 241 6 6 chr1 18602410 18602572 -224061781 - MLT1G LTR MaLR 0 590 429 * 1140 247 48 24 chr1 18602571 18602863 -224061490 - MLT1G LTR MaLR -274 316 18 848 188 6 24 chr1 18602863 18603028 -224061325 - AluJb SINE Alu -13 299 138 500 262 9 0 chr1 18603057 18603164 -224061189 + MIR SINE MIR 155 262 0 2143 126 7 10 chr1 18603872 18604173 -224060180 - AluSx SINE Alu -12 300 1 2587 80 20 6 chr1 18604196 18604546 -224059807 - THE1A LTR MaLR 0 355 1 219 200 0 0 chr1 18604596 18604636 -224059717 + MER5A DNA MER1_type 47 86 -103 356 230 86 115 chr1 18605331 18605505 -224058848 + MIR SINE MIR 13 181 -81 744 271 47 20 chr1 18605752 18606007 -224058346 + MIR SINE MIR 1 262 0 1441 132 0 64 chr1 18606256 18606516 -224057837 + AluJb SINE Alu 65 309 0 2117 135 0 3 chr1 18606525 18606822 -224057531 + AluSg SINE Alu 9 304 -6 306 214 0 14 chr1 18606833 18606903 -224057450 + L1MB7 LINE L1 6107 6175 -9 2181 231 89 8 chr1 18607012 18607608 -224056745 - LTR48B LTR ERV1 0 644 1 440 266 27 76 chr1 18607776 18607960 -224056393 - LTR48B-int LTR ERV1 -221 4715 4541 * 16314 164 72 80 chr1 18607939 18609296 -224055057 - LTR49-int LTR ERV1 -531 5800 4433 942 48 96 0 chr1 18609296 18609421 -224054932 - MER85 DNA T2_type -2 137 1 16314 164 72 80 chr1 18609421 18609960 -224054393 - LTR49-int LTR ERV1 -1898 4433 3891 1709 194 3 3 chr1 18609960 18610248 -224054105 + AluJo SINE Alu 1 288 -24 16314 164 72 80 chr1 18610248 18611336 -224053017 - LTR49-int LTR ERV1 -2440 3891 2795 185 237 17 34 chr1 18611336 18611395 -224052958 - L3 LINE CR1 -276 1301 1244 16314 164 72 80 chr1 18611395 18611536 -224052817 - LTR49-int LTR ERV1 -3536 2795 2654 1797 183 0 10 chr1 18611536 18611826 -224052527 - AluJb SINE Alu -20 292 6 16314 164 72 80 chr1 18611826 18613107 -224051246 - LTR49-int LTR ERV1 -3677 2654 1372 519 118 0 11 chr1 18613222 18613315 -224051038 - MER41B-int LTR ERV1 -4941 1390 1299 * 692 68 0 0 chr1 18613314 18613402 -224050951 - MER41B-int LTR ERV1 -5402 929 842 3403 121 19 45 chr1 18613445 18613977 -224050376 - MER4B LTR ERV1 -8 602 87 2240 134 0 0 chr1 18613977 18614284 -224050069 - AluSx SINE Alu -5 307 1 3403 121 19 45 chr1 18614284 18614369 -224049984 - MER4B LTR ERV1 -523 87 1 2903 149 25 36 chr1 18614370 18614937 -224049416 - MER41B-int LTR ERV1 -4465 1481 909 2835 135 61 122 chr1 18614937 18615612 -224048741 - MER41B LTR ERV1 0 635 2 2903 149 25 36 chr1 18615612 18616016 -224048337 - MER41B-int LTR ERV1 -5037 909 1 2006 224 93 7 chr1 18616021 18616579 -224047774 - LTR48B LTR ERV1 -17 627 22 2159 108 27 7 chr1 18616580 18616875 -224047478 + AluSx SINE Alu 1 301 -11 956 171 0 0 chr1 18616875 18617050 -224047303 + AluSg/x SINE Alu 132 306 0 259 135 0 0 chr1 18617051 18617088 -224047265 - LTR29 LTR ERV1 -585 37 1 3152 172 121 26 chr1 18617140 18617804 -224046549 + LTR8A LTR ERV1 1 727 0 283 282 24 12 chr1 18617861 18617946 -224046407 + MIR SINE MIR 61 146 -116 181 271 0 21 chr1 18618051 18618099 -224046254 - L2 LINE L2 -1 3271 3225 3549 151 62 30 chr1 18618382 18618751 -224045602 + LTR8A LTR ERV1 12 368 -359 2206 140 3 0 chr1 18618751 18619059 -224045294 - AluSx SINE Alu -3 309 1 3549 151 62 30 chr1 18619059 18619383 -224044970 + LTR8A LTR ERV1 368 727 0 180 152 0 0 chr1 18619383 18619416 -224044937 + CT-rich Low_complexity Low_complexity 2 34 0 294 294 92 16 chr1 18619598 18619782 -224044571 - L2 LINE L2 -189 3083 2886 2537 181 45 38 chr1 18619782 18620357 -224043996 + MER34C LTR ERV1 1 579 -6 2328 112 14 6 chr1 18620446 18620795 -224043558 + MER4B LTR ERV1 1 352 -258 443 145 29 0 chr1 18620796 18620888 -224043465 - AluSp/q SINE Alu 0 310 217 392 86 0 0 chr1 18620888 18620946 -224043407 + MER4B LTR ERV1 553 610 0 604 216 152 97 chr1 18620946 18621155 -224043198 - MER39 LTR ERV1 -30 677 443 2169 108 0 0 chr1 18621155 18621467 -224042886 - AluSc SINE Alu 0 314 3 604 216 152 97 chr1 18621467 18621566 -224042787 - MER39 LTR ERV1 -264 443 351 410 134 0 0 chr1 18621572 18621639 -224042714 - AluJo SINE Alu -11 301 235 3952 129 13 19 chr1 18621646 18622274 -224042079 - MER41B LTR ERV1 -9 626 3 1195 215 4 9 chr1 18622274 18622502 -224041851 - AluJo SINE Alu -85 227 1 235 220 37 83 chr1 18622504 18622613 -224041740 - MER39 LTR ERV1 -355 352 249 * 240 256 22 56 chr1 18622587 18622677 -224041676 - LTR29 LTR ERV1 -535 87 1 276 308 60 0 chr1 18622689 18622822 -224041531 - L2 LINE L2 -534 2780 2640 280 250 104 0 chr1 18622823 18622919 -224041434 - LTR16C LTR ERVL 0 491 386 596 284 140 47 chr1 18623259 18623723 -224040630 - L2 LINE L2 -652 2662 2156 213 128 26 0 chr1 18624169 18624208 -224040145 + G-rich Low_complexity Low_complexity 1 40 0 614 218 23 15 chr1 18624466 18624599 -224039754 - MIR3 SINE MIR -61 147 14 360 276 26 43 chr1 18625351 18625467 -224038886 + MER81 DNA DNA 1 114 0 207 337 69 0 chr1 18625552 18625653 -224038700 + MIR SINE MIR 47 154 -108 1300 195 29 20 chr1 18625654 18625949 -224038404 - LTR10B LTR ERV1 0 547 221 188 233 17 17 chr1 18626154 18626214 -224038139 + L2 LINE L2 2456 2515 -799 348 250 24 0 chr1 18626419 18626503 -224037850 - MIR SINE MIR -63 145 60 348 295 200 19 chr1 18626507 18626717 -224037636 + MIR SINE MIR 15 262 0 482 246 77 8 chr1 18627581 18627711 -224036642 + MIR SINE MIR 13 151 -111 180 213 0 64 chr1 18627708 18627755 -224036598 + L2 LINE L2 3243 3286 -27 * 192 300 50 0 chr1 18627821 18627881 -224036472 + MER5A DNA MER1_type 6 68 -121 344 294 85 51 chr1 18628103 18628338 -224036015 - MIR SINE MIR 0 262 20 1860 175 13 7 chr1 18629182 18629485 -224034868 + AluJb SINE Alu 1 305 -7 556 255 107 29 chr1 18630048 18630291 -224034062 + MIR SINE MIR 1 262 0 345 225 0 0 chr1 18630464 18630535 -224033818 + MER103 DNA DNA 9 79 -87 401 369 58 36 chr1 18630765 18631074 -224033279 + L2 LINE L2 2871 3186 -86 268 360 0 12 chr1 18631173 18631259 -224033094 + MIR SINE MIR 4 88 -174 233 130 0 87 chr1 18631264 18631310 -224033043 + L2 LINE L2 3227 3268 -4 248 65 161 81 chr1 18631350 18631412 -224032941 + MIR SINE MIR 114 180 -82 277 98 0 0 chr1 18631414 18631455 -224032898 - AluSp/q SINE Alu -11 292 252 876 113 0 0 chr1 18631456 18631571 -224032782 - AluSp SINE Alu -198 115 1 470 196 11 0 chr1 18631571 18631663 -224032690 + MIR SINE MIR 170 262 0 861 252 35 8 chr1 18632516 18632774 -224031579 - LTR16C LTR ERVL -7 484 220 530 293 75 30 chr1 18632795 18633240 -224031113 + MLT1H LTR MaLR 39 549 0 346 299 103 0 chr1 18633242 18633359 -224030994 - LTR16C LTR ERVL -269 222 94 209 247 353 0 chr1 18633535 18633620 -224030733 + L2 LINE L2 3199 3313 0 * 479 302 131 34 chr1 18633619 18634069 -224030284 - L2 LINE L2 -234 3038 2499 236 197 0 15 chr1 18634292 18634358 -224029995 + CT-rich Low_complexity Low_complexity 3 67 0 230 362 62 26 chr1 18634420 18634589 -224029764 + MIR SINE MIR 3 183 -65 21 36 0 0 chr1 18634845 18634873 -224029480 + AT_rich Low_complexity Low_complexity 1 28 0 251 233 0 0 chr1 18635269 18635329 -224029024 - MIR SINE MIR -89 119 60 285 304 39 10 chr1 18635357 18635459 -224028894 + L2 LINE L2 3209 3313 0 743 275 90 24 chr1 18635572 18635906 -224028447 + MLT1H LTR MaLR 32 387 -162 1910 182 3 0 chr1 18635932 18636228 -224028125 + AluJb SINE Alu 1 297 -15 186 118 0 0 chr1 18636378 18636412 -224027941 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 504 330 54 27 chr1 18636619 18636843 -224027510 - MIR SINE MIR -13 249 20 351 355 7 26 chr1 18637065 18637172 -224027181 + MER5A DNA MER1_type 26 131 -58 1747 157 9 53 chr1 18637172 18637490 -224026863 - AluJo SINE Alu -8 304 1 351 355 7 26 chr1 18637490 18637534 -224026819 + MER5A DNA MER1_type 131 174 -15 180 0 0 0 chr1 18637743 18637763 -224026590 + (T)n Simple_repeat Simple_repeat 1 20 0 284 260 191 40 chr1 18637916 18638089 -224026264 - MIR SINE MIR -17 245 47 310 313 75 0 chr1 18638163 18638297 -224026056 + MIR3 SINE MIR 8 151 -57 663 283 64 34 chr1 18639254 18639519 -224024834 + L2 LINE L2 3041 3313 0 357 300 17 17 chr1 18640220 18640340 -224024013 + MER5A DNA MER1_type 1 120 -69 1661 188 84 15 chr1 18640340 18640675 -224023678 - MLT1A1 LTR MaLR 0 365 8 3129 177 26 0 chr1 18640717 18641264 -224023089 - MER68 LTR ERV1 0 562 2 279 301 27 62 chr1 18641802 18641948 -224022405 + MIR SINE MIR 57 197 -65 2818 114 46 2 chr1 18642126 18642538 -224021815 - MSTB1 LTR MaLR -2 430 1 333 247 39 20 chr1 18642560 18642673 -224021680 + MIR SINE MIR 51 164 -65 389 238 0 0 chr1 18642816 18642900 -224021453 - MER103 DNA DNA -45 121 38 426 275 32 81 chr1 18643665 18643907 -224020446 + MIR SINE MIR 5 242 -20 297 106 0 0 chr1 18643976 18644023 -224020330 - L1ME3A LINE L1 0 6170 6124 23 33 0 0 chr1 18644027 18644057 -224020296 + AT_rich Low_complexity Low_complexity 1 30 0 466 217 134 0 chr1 18644139 18644296 -224020057 - L1MD3 LINE L1 0 7995 7818 415 265 73 0 chr1 18644295 18644446 -224019907 - L1ME3A LINE L1 -33 6137 5976 * 24 32 0 0 chr1 18644749 18644780 -224019573 + AT_rich Low_complexity Low_complexity 1 31 0 688 196 0 42 chr1 18644799 18644816 -224019537 - AluJo SINE Alu -169 143 127 4685 22 9 0 chr1 18644816 18645353 -224019000 + L1PA3 LINE L1 5613 6154 -1 688 196 0 42 chr1 18645353 18645478 -224018875 - AluJo SINE Alu -185 127 7 250 167 0 0 chr1 18645484 18645526 -224018827 + MLT1C LTR MaLR 40 81 -386 230 294 12 0 chr1 18645678 18645763 -224018590 - L2 LINE L2 -1052 2262 2177 1839 184 17 0 chr1 18645776 18646134 -224018219 + MLT1B LTR MaLR 24 387 -3 454 291 103 0 chr1 18646139 18646314 -224018039 + MIR SINE MIR 70 262 0 227 259 44 111 chr1 18647437 18647572 -224016781 + MIR SINE MIR 18 143 -65 258 320 80 27 chr1 18647912 18648062 -224016291 + MIR SINE MIR 50 207 -55 778 247 31 51 chr1 18648250 18648505 -224015848 - MIR SINE MIR 0 262 13 216 229 0 0 chr1 18648604 18648652 -224015701 - L2 LINE L2 -12 3260 3213 764 296 15 0 chr1 18648694 18648893 -224015460 + MIR SINE MIR 52 253 -9 369 282 57 8 chr1 18648947 18649071 -224015282 - MIR SINE MIR -114 148 19 1756 166 65 3 chr1 18649368 18649676 -224014677 - MLT1A1 LTR MaLR -8 357 31 722 275 107 0 chr1 18649944 18650177 -224014176 + LTR16C LTR ERVL 233 490 -1 243 309 43 11 chr1 18650257 18650351 -224014002 + MIR SINE MIR 52 148 -60 2306 113 7 0 chr1 18650574 18650884 -224013469 - AluSx SINE Alu 0 312 1 458 258 159 0 chr1 18651298 18651449 -224012904 - MER5A DNA MER1_type -6 183 9 599 266 82 20 chr1 18651547 18651791 -224012562 - MIR SINE MIR -1 261 3 278 240 16 32 chr1 18652367 18652492 -224011861 + CT-rich Low_complexity Low_complexity 2 124 0 473 125 43 45 chr1 18652493 18652901 -224011452 + (TCTCTG)n Simple_repeat Simple_repeat 1 407 0 216 318 9 9 chr1 18652828 18652935 -224011418 + CT-rich Low_complexity Low_complexity 1 107 0 * 383 283 9 9 chr1 18653081 18653195 -224011158 + C-rich Low_complexity Low_complexity 1 114 0 366 310 48 86 chr1 18654573 18654863 -224009490 + L2 LINE L2 2994 3272 0 258 319 121 17 chr1 18655623 18655739 -224008614 + L2 LINE L2 3121 3248 -24 206 62 31 0 chr1 18655748 18655780 -224008573 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1415 292 97 17 chr1 18655788 18656775 -224007578 - L2 LINE L2 -21 3292 2228 634 261 67 62 chr1 18657220 18657375 -224006978 + MLT1J2 LTR MaLR 33 186 -223 2367 149 66 23 chr1 18657375 18657857 -224006496 - MLT1D LTR MaLR -2 503 1 634 261 67 62 chr1 18657857 18657996 -224006357 + MLT1J2 LTR MaLR 186 338 -71 2400 142 26 21 chr1 18657996 18658418 -224005935 - MSTA LTR MaLR -4 424 1 634 261 67 62 chr1 18658418 18658486 -224005867 + MLT1J2 LTR MaLR 338 404 -5 245 306 122 51 chr1 18658678 18658874 -224005479 + MLT1I LTR MaLR 86 295 -114 382 234 6 77 chr1 18658895 18659061 -224005292 + MLT1H LTR MaLR 404 536 -13 199 236 0 111 chr1 18659629 18659701 -224004652 + MIR SINE MIR 28 91 -171 323 303 76 8 chr1 18660473 18660605 -224003748 - MIR SINE MIR -34 228 88 186 43 0 0 chr1 18661613 18661636 -224002717 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 479 291 42 26 chr1 18661642 18661831 -224002522 - L2 LINE L2 -3 3269 3078 390 244 65 24 chr1 18661976 18662099 -224002254 - MIR SINE MIR -62 146 19 336 301 128 13 chr1 18662307 18662463 -224001890 - MIR3 SINE MIR -15 193 20 201 74 0 0 chr1 18662471 18662498 -224001855 + (CTCA)n Simple_repeat Simple_repeat 1 27 0 468 226 188 31 chr1 18662531 18662818 -224001535 - L2 LINE L2 -60 3253 2922 259 301 206 0 chr1 18663425 18663561 -224000792 - MIR SINE MIR -2 260 97 286 378 86 5 chr1 18663874 18664083 -224000270 - MIR SINE MIR -6 256 31 420 287 78 0 chr1 18664524 18664653 -223999700 + MIR3 SINE MIR 19 157 -51 1053 163 0 6 chr1 18664883 18665109 -223999244 + (TCCA)n Simple_repeat Simple_repeat 1 403 0 1053 106 0 0 chr1 18665109 18665289 -223999064 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 190 315 34 56 chr1 18665395 18665484 -223998869 - L2 LINE L2 -1 3312 3226 * 233 318 57 0 chr1 18665479 18665567 -223998786 - MIR SINE MIR 0 262 170 196 281 114 26 chr1 18665584 18665698 -223998655 - L2 LINE L2 0 3313 3190 455 266 31 0 chr1 18665698 18665826 -223998527 + L1ME2 LINE L1 6031 6162 -2 309 284 74 7 chr1 18665919 18666067 -223998286 - L2 LINE L2 -141 3172 3015 2460 227 65 28 chr1 18666067 18666209 -223998144 - L1ME2 LINE L1 -150 6014 5879 2181 141 0 0 chr1 18666209 18666506 -223997847 - AluSx SINE Alu -15 297 1 2460 227 65 28 chr1 18666506 18667545 -223996808 - L1ME2 LINE L1 -285 5879 4786 933 254 73 15 chr1 18667545 18667875 -223996478 - L2 LINE L2 -566 2748 2400 215 163 23 0 chr1 18667974 18668017 -223996336 - L2 LINE L2 -213 3059 3016 362 262 172 60 chr1 18668287 18668520 -223995833 + MIR SINE MIR 4 262 0 232 222 103 43 chr1 18668513 18668629 -223995724 - MIR SINE MIR -59 149 37 * 2214 125 0 23 chr1 18669268 18669572 -223994781 - AluSg SINE Alu -13 297 1 529 202 330 0 chr1 18669661 18669849 -223994504 + MIR SINE MIR 13 262 0 2113 110 20 7 chr1 18669893 18670192 -223994161 + AluSx SINE Alu 2 304 -8 313 327 103 10 chr1 18670295 18670515 -223993838 + MIR SINE MIR 2 249 -13 265 246 46 0 chr1 18672823 18672888 -223991465 + MIR SINE MIR 110 177 -85 238 226 0 32 chr1 18675037 18675099 -223989254 + CT-rich Low_complexity Low_complexity 1 60 0 227 281 67 11 chr1 18675156 18675245 -223989108 + MIR SINE MIR 44 137 -71 261 248 0 89 chr1 18675860 18675961 -223988392 - L2 LINE L2 -81 3232 3141 370 183 0 0 chr1 18676140 18676200 -223988153 - AluJo SINE Alu -116 186 127 233 216 0 91 chr1 18676297 18676385 -223987968 - MER63 DNA MER1_type -2 1060 981 333 228 13 13 chr1 18676527 18676606 -223987747 - L2 LINE L2 -541 2773 2695 483 320 36 10 chr1 18676832 18677026 -223987327 + MIR SINE MIR 20 218 -44 364 258 91 45 chr1 18677245 18677377 -223986976 - L2 LINE L2 -8 3264 3127 718 246 50 20 chr1 18677687 18677886 -223986467 - MIR SINE MIR -37 225 21 1148 103 0 6 chr1 18678280 18678455 -223985898 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 186 133 0 0 chr1 18678457 18678487 -223985866 + (TC)n Simple_repeat Simple_repeat 1 30 0 1877 159 0 43 chr1 18678487 18678813 -223985540 - AluJo SINE Alu 0 312 1 740 236 99 14 chr1 18678915 18679127 -223985226 + MIR SINE MIR 3 232 -30 1135 186 114 10 chr1 18679266 18679556 -223984797 + MER33 DNA MER1_type 5 324 0 310 371 29 0 chr1 18679556 18679696 -223984657 - MIR3 SINE MIR -53 155 12 333 267 0 0 chr1 18680298 18680414 -223983939 + C-rich Low_complexity Low_complexity 3 118 0 337 356 10 0 chr1 18680425 18680526 -223983827 + C-rich Low_complexity Low_complexity 3 104 0 243 286 0 0 chr1 18680537 18680642 -223983711 + C-rich Low_complexity Low_complexity 1 105 0 316 416 17 0 chr1 18680653 18680857 -223983496 + (TCTCTG)n Simple_repeat Simple_repeat 1 207 0 240 361 13 0 chr1 18680747 18680905 -223983448 + CT-rich Low_complexity Low_complexity 2 161 0 * 390 393 12 0 chr1 18680919 18681092 -223983261 + C-rich Low_complexity Low_complexity 5 179 0 2168 131 3 0 chr1 18681660 18681965 -223982388 + AluSp SINE Alu 1 306 -7 372 292 22 87 chr1 18682677 18682862 -223981491 + MIR SINE MIR 34 206 -56 197 259 24 12 chr1 18683409 18683494 -223980859 + L2 LINE L2 2968 3053 -260 * 467 294 129 51 chr1 18683484 18683855 -223980498 + L2 LINE L2 2861 3260 -12 399 303 122 64 chr1 18683917 18684404 -223979949 + L2 LINE L2 2799 3313 0 710 220 43 38 chr1 18685274 18685460 -223978893 + MER5A DNA MER1_type 3 189 0 316 342 40 13 chr1 18686612 18686764 -223977589 + MIR3 SINE MIR 20 175 -33 271 280 47 9 chr1 18687758 18687865 -223976488 + MIR SINE MIR 25 135 -127 758 147 0 16 chr1 18687890 18688019 -223976334 - FLAM_C SINE Alu -5 128 2 347 303 123 0 chr1 18688020 18688142 -223976211 + MIR SINE MIR 122 258 -4 685 321 8 12 chr1 18688544 18688787 -223975566 + MIR SINE MIR 21 262 0 849 267 27 4 chr1 18689575 18689800 -223974553 + MIR SINE MIR 31 260 -2 204 100 0 0 chr1 18690224 18690254 -223974099 + MIR SINE MIR 119 148 -114 307 196 49 12 chr1 18690390 18690485 -223973868 + MIR SINE MIR 25 123 -85 347 320 124 5 chr1 18691368 18691562 -223972791 - MIR SINE MIR -32 230 14 257 286 155 43 chr1 18691734 18691895 -223972458 - MIR SINE MIR -20 242 64 * 641 260 160 14 chr1 18691892 18692111 -223972242 + MIR SINE MIR 8 258 -4 2092 149 3 0 chr1 18692111 18692419 -223971934 + AluSx SINE Alu 1 309 -3 1302 139 0 5 chr1 18693409 18693596 -223970757 + AluJo SINE Alu 85 270 -42 4607 201 7 16 chr1 18693977 18695383 -223968970 + L1MB8 LINE L1 4779 6171 -7 2109 129 7 0 chr1 18695401 18695743 -223968610 + AluSx SINE Alu 1 344 0 600 257 77 6 chr1 18696090 18696273 -223968080 + MIR SINE MIR 58 253 -9 791 194 39 6 chr1 18696353 18696533 -223967820 + MLT1C LTR MaLR 1 186 -281 506 192 77 0 chr1 18696540 18696644 -223967709 + FLAM_C SINE Alu 5 116 -27 998 146 20 4 chr1 18696655 18696910 -223967443 + GA-rich Low_complexity Low_complexity 1 259 0 1045 213 35 42 chr1 18696925 18697212 -223967141 + MLT1C LTR MaLR 180 464 -3 380 208 58 50 chr1 18697246 18697366 -223966987 + L2 LINE L2 3193 3313 0 397 243 156 98 chr1 18697389 18697665 -223966688 + L2 LINE L2 3021 3312 -1 194 204 0 41 chr1 18697815 18697864 -223966489 - MIR SINE MIR -141 67 21 1768 169 33 3 chr1 18698042 18698343 -223966010 - AluJb SINE Alu 0 312 3 369 285 35 35 chr1 18698500 18698672 -223965681 + MIR SINE MIR 19 190 -72 355 349 0 8 chr1 18699886 18700015 -223964338 + MIR SINE MIR 81 208 -54 415 294 25 0 chr1 18700426 18700545 -223963808 - MIR SINE MIR -49 213 92 232 286 14 29 chr1 18700560 18700630 -223963723 + MIR SINE MIR 77 145 -117 * 260 286 32 52 chr1 18700627 18700698 -223963655 - MIR3 SINE MIR 0 208 137 2467 138 28 3 chr1 18700698 18701053 -223963300 + THE1B LTR MaLR 1 364 0 260 286 32 52 chr1 18701053 18701135 -223963218 - MIR3 SINE MIR -71 137 58 618 253 14 0 chr1 18701310 18701456 -223962897 + MIR SINE MIR 78 225 -37 183 331 96 42 chr1 18701456 18701716 -223962637 + L2 LINE L2 3037 3310 -3 346 290 49 15 chr1 18702169 18702302 -223962051 - MIR3 SINE MIR -15 193 57 209 250 39 0 chr1 18703334 18703386 -223960967 - MIR SINE MIR -114 148 95 1301 256 35 0 chr1 18703686 18704002 -223960351 - MER58B DNA MER1_type -14 327 1 307 368 68 18 chr1 18704120 18704283 -223960070 + MIR SINE MIR 20 190 -72 360 352 98 27 chr1 18705841 18706176 -223958177 + L2 LINE L2 2397 2755 -559 3555 86 12 4 chr1 18706191 18706677 -223957676 + L1PB1 LINE L1 5662 6151 0 1318 203 8 8 chr1 18706781 18707032 -223957321 + L1MC1 LINE L1 6083 6333 0 318 389 0 0 chr1 18707129 18707296 -223957057 + C-rich Low_complexity Low_complexity 2 168 0 460 200 61 0 chr1 18707349 18707464 -223956889 - L1MD3 LINE L1 -5 7990 7869 194 178 0 0 chr1 18708114 18708159 -223956194 + L2 LINE L2 3020 3064 -208 182 234 0 21 chr1 18708277 18708324 -223956029 + L2 LINE L2 3266 3311 -2 449 324 26 12 chr1 18708327 18708527 -223955826 + MIR SINE MIR 12 219 -43 203 323 0 15 chr1 18709097 18709162 -223955191 + MIR SINE MIR 178 241 -21 276 295 39 0 chr1 18709206 18709284 -223955069 - L2 LINE L2 -12 3301 3221 2189 172 3 6 chr1 18709290 18709656 -223954697 + MER47A DNA MER2_type 1 365 -1 1254 296 84 14 chr1 18709904 18710475 -223953878 - L1ME1 LINE L1 -5 6161 5551 215 250 167 10 chr1 18713181 18713277 -223951076 - MIR3 SINE MIR -44 164 54 192 220 80 0 chr1 18714424 18714474 -223949879 + MIR SINE MIR 82 135 -73 233 250 0 0 chr1 18715612 18715660 -223948693 - L2 LINE L2 -20 3252 3205 256 237 184 44 chr1 18715705 18715819 -223948534 + MIR SINE MIR 11 140 -122 * 561 216 34 83 chr1 18715817 18715991 -223948362 - MIR SINE MIR -68 194 30 1509 202 94 57 chr1 18715991 18716343 -223948010 + MLT1A1 LTR MaLR 1 365 0 561 216 34 83 chr1 18716343 18716372 -223947981 - MIR SINE MIR -232 30 1 225 313 40 0 chr1 18716373 18716474 -223947879 - MIR SINE MIR -76 132 29 459 290 19 32 chr1 18716914 18717069 -223947284 - MIR SINE MIR -63 199 47 835 221 20 74 chr1 18717758 18718056 -223946297 - L2 LINE L2 0 3313 3032 1551 236 52 33 chr1 18718329 18718787 -223945566 + MLT1J LTR MaLR 43 509 -2 345 322 0 78 chr1 18718908 18719088 -223945265 - Charlie8 DNA MER1_type -2245 172 7 309 109 0 0 chr1 18719297 18719343 -223945010 + (CA)n Simple_repeat Simple_repeat 2 47 0 885 232 68 5 chr1 18719784 18720012 -223944341 + MIR SINE MIR 6 240 -22 609 317 20 5 chr1 18720327 18720529 -223943824 + MIR SINE MIR 3 207 -55 314 307 199 6 chr1 18720604 18720770 -223943583 - MIR SINE MIR 0 262 65 209 320 40 0 chr1 18720842 18720917 -223943436 + L2 LINE L2 3230 3307 -6 * 704 179 20 119 chr1 18720915 18721116 -223943237 - MIR SINE MIR 0 262 82 713 171 33 8 chr1 18721875 18722247 -223942106 + (TCCA)n Simple_repeat Simple_repeat 1 381 0 373 366 39 32 chr1 18722251 18722560 -223941793 - L2 LINE L2 0 3313 3003 578 320 40 18 chr1 18723071 18723299 -223941054 + MIR SINE MIR 3 235 -27 410 304 36 10 chr1 18723965 18724107 -223940246 + MIR SINE MIR 19 163 -61 332 254 0 0 chr1 18724146 18724213 -223940140 + L2 LINE L2 3190 3256 -16 813 214 71 20 chr1 18724243 18724439 -223939914 - MIR SINE MIR -24 238 33 280 346 53 15 chr1 18724788 18724921 -223939432 - L2 LINE L2 -17 3255 3118 2483 175 59 2 chr1 18724966 18725423 -223938930 + MLT1D LTR MaLR 23 505 0 650 264 131 48 chr1 18725556 18725849 -223938504 - L2 LINE L2 0 3313 2991 2450 108 30 25 chr1 18725849 18726211 -223938142 + THE1B LTR MaLR 1 364 0 650 264 131 48 chr1 18726211 18726231 -223938122 - L2 LINE L2 -322 2991 2974 958 264 96 38 chr1 18726600 18726680 -223937673 + L1ME3 LINE L1 5505 5579 -583 2317 176 28 26 chr1 18726680 18727146 -223937207 + MLT1C LTR MaLR 1 467 0 958 264 96 38 chr1 18727146 18727409 -223936944 + L1ME3 LINE L1 5579 5868 -294 232 244 219 42 chr1 18727431 18727550 -223936803 + L1ME3 LINE L1 5940 6079 -83 697 277 115 13 chr1 18728277 18728512 -223935841 + MIR SINE MIR 4 262 0 311 295 27 9 chr1 18729198 18729310 -223935043 + MIR SINE MIR 109 222 -40 206 261 0 0 chr1 18729399 18729445 -223934908 + L2 LINE L2 3227 3272 0 206 370 110 7 chr1 18729933 18730087 -223934266 - MIR SINE MIR -28 234 65 855 265 15 0 chr1 18730227 18730427 -223933926 + MIR SINE MIR 50 252 -10 300 310 23 39 chr1 18730973 18731102 -223933251 - MIR3 SINE MIR -45 163 37 664 301 99 32 chr1 18731195 18731778 -223932575 - L2 LINE L2 -40 3273 2652 314 348 18 0 chr1 18731840 18731952 -223932401 + MIR SINE MIR 33 146 -62 1101 60 21 20 chr1 18732172 18732613 -223931740 + (TCCA)n Simple_repeat Simple_repeat 1 441 0 417 39 0 0 chr1 18733047 18733098 -223931255 + (TG)n Simple_repeat Simple_repeat 2 52 0 434 225 94 14 chr1 18733231 18733369 -223930984 + MIR3 SINE MIR 34 182 -26 486 340 64 31 chr1 18733397 18733788 -223930565 + L2 LINE L2 2201 2604 -710 192 200 200 0 chr1 18733898 18733963 -223930390 - MER5B DNA MER1_type 0 178 101 252 268 0 0 chr1 18734042 18734098 -223930255 + L2 LINE L2 3194 3249 -64 181 318 239 0 chr1 18734601 18734689 -223929664 - L2 LINE L2 -3 3269 3161 2042 106 3 3 chr1 18736155 18736474 -223927879 + AluSx SINE Alu 1 319 0 236 330 17 8 chr1 18736548 18736666 -223927687 + MIR SINE MIR 26 144 -118 234 298 0 36 chr1 18736779 18736863 -223927490 - L2 LINE L2 -3 3269 3189 339 206 54 99 chr1 18737489 18737652 -223926701 + MER5A DNA MER1_type 7 170 -16 755 178 8 0 chr1 18737713 18737842 -223926511 - FLAM_C SINE Alu -4 139 10 268 311 119 13 chr1 18738843 18738994 -223925359 - L2 LINE L2 -5 3267 3101 272 194 14 56 chr1 18739409 18739481 -223924872 + MER39 LTR ERV1 5 73 -634 641 323 36 66 chr1 18739634 18739899 -223924454 + L2 LINE L2 2855 3101 -212 1529 184 87 16 chr1 18739899 18740220 -223924133 - MER2 DNA MER2_type 0 344 1 641 323 36 66 chr1 18740220 18740425 -223923928 + L2 LINE L2 3101 3311 -2 516 290 166 54 chr1 18740541 18740800 -223923553 - L2 LINE L2 0 3272 2985 665 289 67 18 chr1 18741085 18741524 -223922829 + MER39 LTR ERV1 2 666 -41 364 235 144 0 chr1 18741541 18741673 -223922680 - LTR16C LTR ERVL -24 467 317 262 264 28 0 chr1 18741805 18741877 -223922476 - L2 LINE L2 -6 3307 3234 583 272 42 26 chr1 18741905 18742096 -223922257 - LTR16C LTR ERVL -218 273 80 253 304 83 58 chr1 18742172 18742484 -223921869 + L2 LINE L2 2994 3313 0 195 184 53 0 chr1 18742570 18742608 -223921745 - MIR SINE MIR -91 117 78 339 267 0 0 chr1 18743176 18743262 -223921091 + MIR3 SINE MIR 81 166 -42 190 153 0 119 chr1 18743328 18743387 -223920966 + MIR SINE MIR 137 188 -74 250 286 89 54 chr1 18743521 18743689 -223920664 - MIR SINE MIR -51 211 38 296 304 24 48 chr1 18743742 18743867 -223920486 - MIR SINE MIR -123 139 18 375 296 35 0 chr1 18744532 18744647 -223919706 - L2 LINE L2 -1 3271 3153 211 368 9 0 chr1 18745041 18745147 -223919206 - L2 LINE L2 -251 3021 2915 334 326 81 17 chr1 18745399 18745571 -223918782 + MIR SINE MIR 1 183 -79 432 296 127 31 chr1 18746016 18746446 -223917907 - L2 LINE L2 -181 3091 2608 881 163 4 114 chr1 18747955 18748182 -223916171 + MER20 DNA MER1_type 16 217 -2 309 325 0 0 chr1 18748252 18748329 -223916024 - MIR SINE MIR -63 145 69 336 234 131 19 chr1 18749637 18749744 -223914609 + MIR SINE MIR 74 192 -70 1350 91 6 11 chr1 18750365 18750563 -223913790 - AluY SINE Alu 0 311 118 22 0 0 0 chr1 18750563 18750585 -223913768 + AT_rich Low_complexity Low_complexity 1 22 0 2802 29 0 0 chr1 18750585 18750895 -223913458 - AluYa5 SINE Alu -1 310 1 306 290 129 0 chr1 18750895 18750988 -223913365 + L2 LINE L2 3209 3313 0 185 194 242 0 chr1 18751003 18751065 -223913288 - L2 LINE L2 -24 3289 3213 235 218 18 18 chr1 18751424 18751479 -223912874 + L2 LINE L2 3200 3254 -18 214 225 42 14 chr1 18751498 18751569 -223912784 - MIR SINE MIR -108 154 82 369 250 93 69 chr1 18751680 18751884 -223912469 + MIR SINE MIR 28 236 -26 182 298 21 0 chr1 18751902 18751949 -223912404 - MIR SINE MIR 0 262 215 183 80 0 0 chr1 18752586 18752611 -223911742 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 376 335 0 19 chr1 18753131 18753286 -223911067 + MIR SINE MIR 71 222 -40 263 276 40 0 chr1 18753406 18753482 -223910871 + L2 LINE L2 3235 3313 0 198 294 0 0 chr1 18753674 18753725 -223910628 - L2 LINE L2 -43 3270 3220 236 274 89 40 chr1 18753779 18753903 -223910450 + L2 LINE L2 3183 3312 -1 187 339 85 17 chr1 18753904 18754022 -223910331 - MIR SINE MIR -109 153 28 396 40 0 0 chr1 18755113 18755163 -223909190 + (TG)n Simple_repeat Simple_repeat 2 51 0 252 303 34 107 chr1 18755425 18755603 -223908750 - MER5A DNA MER1_type -9 180 16 297 286 53 6 chr1 18755710 18755865 -223908488 - MIR3 SINE MIR -21 187 20 2174 105 3 23 chr1 18756212 18756516 -223907837 - AluSx SINE Alu -13 299 2 534 189 0 0 chr1 18756581 18756692 -223907661 + (TTCA)n Simple_repeat Simple_repeat 4 114 0 482 261 52 0 chr1 18757152 18757286 -223907067 + MIR SINE MIR 110 250 -12 236 316 33 79 chr1 18757335 18757487 -223906866 - L2 LINE L2 -540 2774 2630 507 268 56 22 chr1 18758121 18758300 -223906053 + MIR3 SINE MIR 12 196 -12 404 295 209 19 chr1 18758389 18758657 -223905696 - L2 LINE L2 -1 3312 2994 1909 158 0 7 chr1 18758939 18759267 -223905086 + AluJb SINE Alu 1 326 0 2150 99 0 4 chr1 18759269 18759591 -223904762 + AluSx SINE Alu 16 336 0 1479 254 35 43 chr1 18759761 18760269 -223904084 - L1ME2 LINE L1 -10 6154 5651 272 254 0 0 chr1 18760300 18760359 -223903994 - L2 LINE L2 -8 3264 3206 198 271 168 9 chr1 18760515 18760622 -223903731 - MIR SINE MIR -62 146 23 229 298 113 24 chr1 18760647 18760771 -223903582 - MIR3 SINE MIR -62 146 12 910 272 104 39 chr1 18761171 18761605 -223902748 + MLT1H1 LTR MaLR 1 462 -93 322 304 43 43 chr1 18761717 18761947 -223902406 - LTR33 LTR ERVL 0 521 292 519 277 15 0 chr1 18762603 18762740 -223901613 + MER45A DNA AcHobo 33 171 -7 2150 139 13 3 chr1 18762742 18763051 -223901302 - AluSx SINE Alu 0 312 1 945 204 87 0 chr1 18763127 18763333 -223901020 - MER58A DNA MER1_type 0 224 1 214 320 27 27 chr1 18763598 18763673 -223900680 + L2 LINE L2 3150 3224 -48 216 260 0 65 chr1 18763792 18763869 -223900484 - MIR SINE MIR -91 117 46 520 40 13 13 chr1 18764251 18764327 -223900026 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 918 103 0 0 chr1 18764327 18764463 -223899890 + (GGAAA)n Simple_repeat Simple_repeat 4 139 0 2229 107 17 0 chr1 18764464 18764755 -223899598 + AluSx SINE Alu 11 306 -6 560 264 71 30 chr1 18765265 18765442 -223898911 - MIR SINE MIR -12 250 63 1924 124 16 72 chr1 18765442 18765828 -223898525 + THE1B LTR MaLR 1 364 0 560 264 71 30 chr1 18765828 18765847 -223898506 - MIR SINE MIR -199 63 46 209 231 15 46 chr1 18766024 18766089 -223898264 - MIR SINE MIR -164 98 36 365 321 0 0 chr1 18766276 18766385 -223897968 + MER81 DNA DNA 1 109 -5 429 339 18 12 chr1 18766468 18766636 -223897717 + L3 LINE CR1 1295 1463 -114 308 155 0 17 chr1 18767887 18767945 -223896408 - MIR SINE MIR -76 132 76 380 319 14 7 chr1 18769464 18769608 -223894745 + MIR3 SINE MIR 16 160 -48 593 231 0 15 chr1 18769679 18769809 -223894544 - L2 LINE L2 0 3313 3186 857 233 98 0 chr1 18769809 18770002 -223894351 - MER58A DNA MER1_type 0 224 13 668 275 70 39 chr1 18771043 18771301 -223893052 + MLT1H LTR MaLR 77 342 -207 1068 249 19 4 chr1 18771442 18771699 -223892654 + MIR SINE MIR 1 261 -1 796 294 19 8 chr1 18772404 18772666 -223891687 - MER46C DNA MER2_type -1 337 73 313 223 23 115 chr1 18772658 18772788 -223891565 - MER46C DNA MER2_type -220 118 1 * 235 290 48 0 chr1 18773286 18773348 -223891005 - MIR SINE MIR -59 149 85 325 275 0 0 chr1 18773394 18773474 -223890879 - MIR SINE MIR 0 262 183 223 319 21 21 chr1 18774042 18774136 -223890217 - MER5A DNA MER1_type -57 132 39 543 285 90 5 chr1 18775204 18775404 -223888949 - MIR SINE MIR -6 256 40 477 192 31 54 chr1 18775514 18775644 -223888709 + LTR16C LTR ERVL 170 296 -195 628 242 46 7 chr1 18775649 18775802 -223888551 + MER5A DNA MER1_type 23 181 -8 597 256 89 25 chr1 18775810 18776013 -223888340 + LTR16C LTR ERVL 276 491 0 1970 181 3 6 chr1 18776145 18776483 -223887870 - MER66B LTR ERV1 -147 339 3 219 367 0 10 chr1 18776535 18776633 -223887720 - MIR SINE MIR -11 251 155 2636 163 2 47 chr1 18776954 18777463 -223886890 + MER66B LTR ERV1 1 486 0 513 273 77 10 chr1 18777670 18777879 -223886474 - MIR SINE MIR -6 256 34 331 340 102 7 chr1 18778451 18778598 -223885755 - MIR SINE MIR -74 188 28 534 254 88 29 chr1 18778950 18779155 -223885198 - MIR SINE MIR -10 252 36 409 250 100 17 chr1 18779217 18779337 -223885016 - MIR SINE MIR -62 146 17 621 311 40 63 chr1 18781537 18782142 -223882211 - L2 LINE L2 -257 3015 2420 489 84 0 0 chr1 18782890 18782961 -223881392 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 210 234 0 31 chr1 18783303 18783367 -223880986 + (TTAGGG)n Simple_repeat Simple_repeat 4 65 0 312 27 0 0 chr1 18783400 18783437 -223880916 + (TTAGGG)n Simple_repeat Simple_repeat 5 41 0 506 328 74 4 chr1 18783591 18783820 -223880533 + MIR SINE MIR 16 260 -2 184 352 56 16 chr1 18783828 18783953 -223880400 + L2 LINE L2 2924 3053 -219 509 341 19 12 chr1 18784821 18785058 -223879295 - MIR SINE MIR -18 244 9 250 319 43 55 chr1 18785257 18785420 -223878933 + MIR3 SINE MIR 45 205 -3 2539 73 3 0 chr1 18785446 18785749 -223878604 + AluY SINE Alu 1 304 -7 254 321 0 0 chr1 18785942 18786026 -223878327 + L2 LINE L2 2550 2633 -681 847 254 108 21 chr1 18786075 18786484 -223877869 + MLT1J2 LTR MaLR 3 409 0 711 320 151 3 chr1 18786484 18787049 -223877304 + L2 LINE L2 2656 3306 -7 361 210 248 34 chr1 18787021 18787195 -223877158 - MIR SINE MIR -37 225 19 * 545 124 10 0 chr1 18787661 18787758 -223876595 + (GGGA)n Simple_repeat Simple_repeat 3 100 0 243 356 90 31 chr1 18788429 18788718 -223875635 + L2 LINE L2 2560 2865 -449 469 330 53 42 chr1 18788800 18789085 -223875268 + L2 LINE L2 2985 3272 0 931 259 56 4 chr1 18789880 18790112 -223874241 + MIR SINE MIR 19 262 0 222 256 19 0 chr1 18790184 18790242 -223874111 - MIR SINE MIR -61 147 94 565 75 0 0 chr1 18790669 18790749 -223873604 + Alu SINE Alu 223 302 -7 300 292 0 0 chr1 18790751 18790840 -223873513 + MIR SINE MIR 77 165 -97 279 192 0 0 chr1 18792065 18792117 -223872236 + L2 LINE L2 3209 3260 -12 458 305 123 13 chr1 18792133 18792369 -223871984 + L1M4 LINE L1 4158 4419 -1727 550 306 70 12 chr1 18792408 18792738 -223871615 + L1M4 LINE L1 3808 4156 -1990 607 279 6 13 chr1 18792759 18792917 -223871436 - MIR SINE MIR -76 186 30 326 288 68 41 chr1 18792954 18793100 -223871253 + L1M4 LINE L1 4177 4326 -1820 237 258 16 0 chr1 18793133 18793195 -223871158 + L2 LINE L2 3250 3312 -1 355 288 18 9 chr1 18793684 18793795 -223870558 + MER94 DNA DNA 16 127 -7 191 291 0 36 chr1 18793808 18793863 -223870490 - MIR SINE MIR -91 171 119 758 281 61 38 chr1 18794184 18794611 -223869742 - L2 LINE L2 -580 2734 2298 23 0 0 0 chr1 18795317 18795340 -223869013 + AT_rich Low_complexity Low_complexity 1 23 0 422 329 55 0 chr1 18795897 18796061 -223868292 + MIR SINE MIR 55 227 -35 367 315 9 0 chr1 18796260 18796368 -223867985 + MIR SINE MIR 20 128 -134 194 346 33 33 chr1 18796451 18796604 -223867749 - L2 LINE L2 -466 2848 2696 474 330 67 18 chr1 18796920 18797144 -223867209 - L3 LINE CR1 -8 1569 1335 276 91 0 0 chr1 18797158 18797202 -223867151 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 234 363 29 0 chr1 18797208 18797310 -223867043 - L2 LINE L2 -35 3278 3174 245 246 36 138 chr1 18797354 18797484 -223866869 + L2 LINE L2 3112 3211 -102 1804 166 0 19 chr1 18797484 18797791 -223866562 - AluJb SINE Alu -3 309 9 245 246 36 138 chr1 18797791 18797884 -223866469 + L2 LINE L2 3211 3312 -1 510 344 25 27 chr1 18798035 18798396 -223865957 - L2 LINE L2 -236 3036 2683 351 320 0 0 chr1 18798882 18798982 -223865371 - MIR3 SINE MIR -37 171 72 1714 301 134 35 chr1 18800847 18801335 -223863018 + L2 LINE L2 1825 2263 -1050 2396 124 28 3 chr1 18801335 18801690 -223862663 - THE1B LTR MaLR 0 364 1 1714 301 134 35 chr1 18801690 18802544 -223861809 + L2 LINE L2 2263 3312 -1 328 342 13 34 chr1 18802612 18802761 -223861592 - MER5B DNA MER1_type -32 146 1 2341 109 62 11 chr1 18802966 18803323 -223861030 + THE1C LTR MaLR 1 375 0 193 311 149 37 chr1 18804165 18804326 -223860027 - MIR SINE MIR -1 261 83 215 332 154 48 chr1 18805006 18805214 -223859139 - L2 LINE L2 0 3272 3043 466 269 36 5 chr1 18805218 18805386 -223858967 + MIR SINE MIR 87 259 -3 351 0 0 0 chr1 18805832 18805871 -223858482 + (CA)n Simple_repeat Simple_repeat 1 39 0 1088 199 24 10 chr1 18806031 18806237 -223858116 + MER3 DNA MER1_type 1 209 0 1378 269 18 0 chr1 18808677 18809012 -223855341 + MER58B DNA MER1_type 1 341 0 681 227 109 27 chr1 18811721 18811941 -223852412 - MIR SINE MIR -19 243 6 396 0 0 0 chr1 18812663 18812707 -223851646 + (TG)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr1 18812706 18812730 -223851623 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 2025 122 0 0 chr1 18812731 18813009 -223851344 - AluSx SINE Alu -33 279 2 1074 273 102 8 chr1 18813129 18813492 -223850861 - L2 LINE L2 -1 3312 2916 439 214 214 29 chr1 18813614 18813754 -223850599 - MER96 DNA MER1_type? -9 166 1 265 306 0 0 chr1 18814075 18814137 -223850216 + L2 LINE L2 3104 3165 -107 253 372 14 28 chr1 18814228 18814373 -223849980 - MIR SINE MIR -107 155 13 243 325 81 24 chr1 18815106 18815229 -223849124 + MIR SINE MIR 27 156 -106 491 230 119 19 chr1 18815700 18815859 -223848494 + MIR3 SINE MIR 8 188 -20 491 237 9 18 chr1 18816431 18816545 -223847808 + MER81 DNA DNA 1 113 -1 180 0 0 0 chr1 18816714 18816734 -223847619 + (TGG)n Simple_repeat Simple_repeat 1 20 0 403 351 106 17 chr1 18816875 18817282 -223847071 + L2 LINE L2 2810 3252 -20 287 297 142 7 chr1 18818152 18818307 -223846046 - MIR SINE MIR 0 262 87 629 218 78 58 chr1 18818667 18818730 -223845623 - MIR SINE MIR 0 262 202 1906 188 55 60 chr1 18818730 18819103 -223845250 - MER47B DNA MER2_type -1905 418 46 1707 172 3 28 chr1 18819103 18819422 -223844931 + AluJb SINE Alu 1 311 -1 1906 188 55 60 chr1 18819422 18819468 -223844885 - MER47B DNA MER2_type -2277 46 1 629 218 78 58 chr1 18819468 18819657 -223844696 - MIR SINE MIR -60 202 3 188 250 0 0 chr1 18820111 18820155 -223844198 + MIR SINE MIR 118 161 -101 199 301 97 0 chr1 18820836 18820939 -223843414 - MIR SINE MIR -90 172 60 302 290 155 21 chr1 18821026 18821219 -223843134 - MIR SINE MIR 0 262 44 1932 100 129 62 chr1 18821426 18821468 -223842885 - THE1B LTR MaLR 0 364 326 2064 101 7 7 chr1 18821468 18821764 -223842589 + AluSg1 SINE Alu 1 296 -13 1932 100 129 62 chr1 18821764 18822062 -223842291 - THE1B LTR MaLR -38 326 1 269 286 110 53 chr1 18822237 18822482 -223841871 - L2 LINE L2 -20 3252 2994 324 200 75 0 chr1 18822679 18822759 -223841594 - MIR SINE MIR -131 131 46 267 264 22 33 chr1 18823302 18823393 -223840960 - L2 LINE L2 -85 3187 3098 279 301 39 39 chr1 18823497 18823600 -223840753 - L2 LINE L2 -90 3182 3080 338 232 0 0 chr1 18823690 18823759 -223840594 + MIR SINE MIR 76 144 -118 1826 128 3 14 chr1 18824295 18824577 -223839776 - AluSx SINE Alu -5 307 29 289 281 167 18 chr1 18824951 18825065 -223839288 + MIR SINE MIR 19 149 -59 349 238 107 0 chr1 18826023 18826138 -223838215 - MIR SINE MIR -32 176 49 257 171 45 23 chr1 18826597 18826685 -223837668 + GA-rich Low_complexity Low_complexity 5 94 0 278 303 30 10 chr1 18827431 18827530 -223836823 + MIR SINE MIR 44 144 -64 314 326 61 0 chr1 18827723 18827855 -223836498 + MIR SINE MIR 61 200 -62 402 302 94 0 chr1 18828455 18828614 -223835739 - MIR SINE MIR -29 233 60 372 354 25 13 chr1 18828842 18829000 -223835353 - MIR SINE MIR -82 180 21 201 209 15 90 chr1 18829011 18829078 -223835275 + L2 LINE L2 3011 3072 -241 444 288 42 0 chr1 18829299 18829417 -223834936 - L2 LINE L2 0 3313 3191 435 238 56 8 chr1 18829476 18829602 -223834751 - MER94 DNA DNA 0 134 3 263 314 134 0 chr1 18829646 18829818 -223834535 + MLT1J2 LTR MaLR 1 195 -255 1032 260 43 54 chr1 18829860 18830244 -223834109 + MLT1J2 LTR MaLR 80 444 -6 255 303 229 0 chr1 18830251 18830360 -223833993 - L2 LINE L2 -255 3058 2925 202 220 20 0 chr1 18830951 18831001 -223833352 + L2 LINE L2 3202 3252 -20 195 256 144 11 chr1 18831043 18831133 -223833220 - MIR SINE MIR -34 228 127 1678 147 11 11 chr1 18831204 18831477 -223832876 - AluJo SINE Alu -39 273 1 350 356 90 0 chr1 18831525 18831713 -223832640 - MIR SINE MIR 0 262 58 495 288 0 0 chr1 18832733 18832847 -223831506 - L2 LINE L2 0 3313 3200 944 243 33 25 chr1 18832847 18832973 -223831380 + MIR SINE MIR 1 131 -131 2674 92 0 42 chr1 18832973 18833015 -223831338 - THE1B LTR MaLR 0 364 322 2414 56 0 7 chr1 18833015 18833317 -223831036 + AluY SINE Alu 1 300 -11 2674 92 0 42 chr1 18833317 18833654 -223830699 - THE1B LTR MaLR -42 322 1 944 243 33 25 chr1 18833654 18833770 -223830583 + MIR SINE MIR 131 245 -17 725 335 95 16 chr1 18833797 18834501 -223829852 - L2 LINE L2 -112 3201 2445 414 272 55 0 chr1 18834520 18834657 -223829696 + MIR SINE MIR 45 206 -56 257 293 192 12 chr1 18835269 18835436 -223828917 - MIR SINE MIR -6 256 60 293 269 111 0 chr1 18836578 18836686 -223827667 - MIR SINE MIR -127 135 16 256 275 159 24 chr1 18837964 18838171 -223826182 - L2 LINE L2 -530 2784 2550 430 199 145 7 chr1 18839037 18839185 -223825168 + MIR SINE MIR 9 187 -62 1711 167 7 3 chr1 18839373 18839661 -223824692 - AluJo SINE Alu -23 289 1 547 213 22 29 chr1 18839749 18839885 -223824468 - MIR3 SINE MIR -59 149 15 398 288 46 0 chr1 18840718 18840871 -223823482 - L2 LINE L2 -217 3055 2896 486 323 35 31 chr1 18840912 18840991 -223823362 - MIR SINE MIR -31 231 154 1125 220 134 80 chr1 18840991 18841223 -223823130 - LTR16C LTR ERVL -3 488 270 1606 154 8 11 chr1 18841223 18841489 -223822864 + AluJb SINE Alu 25 289 -23 1125 220 134 80 chr1 18841489 18841719 -223822634 - LTR16C LTR ERVL -221 270 1 486 323 35 31 chr1 18841719 18841868 -223822485 - MIR SINE MIR -108 154 2 222 263 0 0 chr1 18842447 18842504 -223821849 + L2 LINE L2 3214 3270 -2 * 425 262 213 0 chr1 18842490 18842673 -223821680 + MIR SINE MIR 34 255 -7 313 271 52 10 chr1 18842764 18842860 -223821493 + LTR16C LTR ERVL 201 300 -191 333 292 58 8 chr1 18842888 18843008 -223821345 + LTR16C LTR ERVL 358 483 -8 912 243 5 14 chr1 18843450 18843672 -223820681 + MIR SINE MIR 38 257 -5 530 299 12 12 chr1 18843850 18844017 -223820336 + MIR SINE MIR 21 187 -75 2473 137 32 7 chr1 18844054 18844410 -223819943 + MSTA LTR MaLR 11 381 -47 8545 33 5 0 chr1 18844410 18846220 -223818133 + L1PA4 LINE L1 4374 6188 0 2473 137 32 7 chr1 18846220 18846270 -223818083 + MSTA LTR MaLR 381 428 0 207 162 0 0 chr1 18847271 18847308 -223817045 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 218 348 134 0 chr1 18847364 18847476 -223816877 + L2 LINE L2 3185 3311 -2 241 259 136 0 chr1 18847477 18847558 -223816795 - MIR SINE MIR -66 196 105 406 274 36 42 chr1 18847911 18848079 -223816274 - MIR SINE MIR -56 206 40 285 325 42 33 chr1 18849008 18849128 -223815225 - L2 LINE L2 -5 3267 3147 375 23 0 0 chr1 18849241 18849285 -223815068 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 229 300 80 93 chr1 18849286 18849436 -223814917 - L2 LINE L2 -17 3296 3149 821 243 81 22 chr1 18849547 18849887 -223814466 + MLT1J2 LTR MaLR 67 450 0 316 236 21 4 chr1 18849986 18850080 -223814273 - MIR SINE MIR -92 116 21 668 221 17 33 chr1 18850741 18850922 -223813431 + MIR SINE MIR 14 191 -71 215 265 255 0 chr1 18850957 18851055 -223813298 - MIR3 SINE MIR -4 204 82 999 231 144 48 chr1 18851397 18851730 -223812623 - MLT1A1 LTR MaLR 0 365 1 246 81 0 0 chr1 18852620 18852657 -223811696 + (CA)n Simple_repeat Simple_repeat 2 38 0 352 258 158 0 chr1 18852662 18852821 -223811532 + MIR SINE MIR 14 192 -63 473 286 128 19 chr1 18853078 18853344 -223811009 + L2 LINE L2 3015 3309 -4 377 302 22 14 chr1 18853468 18853526 -223810827 - MIR SINE MIR 0 208 152 1785 157 0 20 chr1 18853526 18853825 -223810528 - AluJb SINE Alu -19 293 1 377 302 22 14 chr1 18853825 18853929 -223810424 - MIR SINE MIR -56 152 44 411 289 48 66 chr1 18853984 18854257 -223810096 + L2 LINE L2 2961 3228 -85 350 264 33 0 chr1 18854263 18854354 -223809999 - MIR SINE MIR -55 153 60 255 355 13 39 chr1 18854952 18855107 -223809246 + MIR3 SINE MIR 37 187 -21 645 292 28 14 chr1 18855629 18855845 -223808508 + L2 LINE L2 3095 3313 0 208 295 16 0 chr1 18856027 18856088 -223808265 - L2 LINE L2 -8 3264 3203 212 297 54 0 chr1 18856098 18856172 -223808181 + L2 LINE L2 3194 3271 -1 * 240 294 106 25 chr1 18856164 18856324 -223808029 - L2 LINE L2 -234 3038 2866 684 307 39 22 chr1 18856943 18857200 -223807153 + MIR SINE MIR 4 262 0 649 317 51 68 chr1 18857600 18858070 -223806283 + L2 LINE L2 2806 3267 -5 251 338 184 37 chr1 18858268 18858404 -223805949 - MIR3 SINE MIR -36 172 17 2212 103 0 19 chr1 18858519 18858831 -223805522 + AluSx SINE Alu 1 306 -6 2137 112 30 0 chr1 18858955 18859258 -223805095 + AluSx SINE Alu 1 312 0 288 271 42 42 chr1 18860832 18860928 -223803425 - MIR SINE MIR -54 208 113 503 291 183 8 chr1 18860934 18861175 -223803178 + LTR33 LTR ERVL 1 283 -238 425 268 116 6 chr1 18861207 18861371 -223802982 + LTR33 LTR ERVL 338 519 -2 1253 242 43 39 chr1 18861456 18861894 -223802459 + MER113 DNA MER1_type? 5 444 -77 503 216 123 98 chr1 18861944 18862148 -223802205 + MER3 DNA MER1_type 1 209 0 427 308 17 0 chr1 18862150 18862270 -223802083 + L2 LINE L2 3191 3312 -1 351 113 0 0 chr1 18862281 18862334 -223802019 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 419 150 0 12 chr1 18862495 18862575 -223801778 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 180 0 0 0 chr1 18863091 18863111 -223801242 + (CAGCC)n Simple_repeat Simple_repeat 4 23 0 362 252 10 58 chr1 18863560 18863663 -223800690 + MIR3 SINE MIR 105 202 -6 236 415 36 13 chr1 18863814 18864038 -223800315 - MIR SINE MIR -12 250 22 189 329 118 0 chr1 18864554 18864639 -223799714 + L2 LINE L2 2920 3014 -258 239 297 25 22 chr1 18864978 18865070 -223799283 - MIR SINE MIR -48 160 66 577 247 87 0 chr1 18865164 18865314 -223799039 + MER63 DNA MER1_type 1 789 -273 498 300 105 11 chr1 18865320 18865510 -223798843 + MIR SINE MIR 45 252 -10 716 217 0 6 chr1 18865513 18865693 -223798660 + CT-rich Low_complexity Low_complexity 1 179 0 247 259 12 49 chr1 18865955 18866036 -223798317 - L2 LINE L2 0 3272 3195 241 312 210 7 chr1 18866385 18866523 -223797830 + MIR SINE MIR 79 244 -18 237 296 135 27 chr1 18866607 18866791 -223797562 + MIR SINE MIR 11 212 -42 184 324 14 14 chr1 18866888 18866959 -223797394 - L3b LINE CR1 -172 1411 1341 275 245 157 29 chr1 18867061 18867163 -223797190 - L2 LINE L2 -12 3260 3146 220 305 12 24 chr1 18868423 18868505 -223795848 + GA-rich Low_complexity Low_complexity 3 83 0 642 332 36 5 chr1 18868798 18869021 -223795332 + MIR SINE MIR 1 230 -32 405 328 33 0 chr1 18869078 18869200 -223795153 + L2 LINE L2 3188 3313 0 194 284 111 0 chr1 18869664 18869745 -223794608 + MIR SINE MIR 96 185 -77 270 0 0 0 chr1 18872200 18872230 -223792123 + (CA)n Simple_repeat Simple_repeat 2 31 0 186 43 0 0 chr1 18872693 18872716 -223791637 + (CA)n Simple_repeat Simple_repeat 1 23 0 213 167 37 0 chr1 18872768 18872822 -223791531 + (CA)n Simple_repeat Simple_repeat 2 57 0 218 116 23 0 chr1 18873101 18873144 -223791209 + (CGG)n Simple_repeat Simple_repeat 2 45 0 220 169 0 31 chr1 18873462 18873527 -223790826 + CT-rich Low_complexity Low_complexity 1 63 0 336 83 0 0 chr1 18874184 18874232 -223790121 + (CA)n Simple_repeat Simple_repeat 2 49 0 261 0 0 0 chr1 18874885 18874914 -223789439 + (T)n Simple_repeat Simple_repeat 1 29 0 242 146 24 0 chr1 18875722 18875763 -223788590 + L2 LINE L2 3254 3295 -18 199 256 0 0 chr1 18875729 18875768 -223788585 + MIR SINE MIR 217 255 -7 * 312 70 0 0 chr1 18875768 18875811 -223788542 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 206 238 48 0 chr1 18875822 18875885 -223788468 + L2 LINE L2 3184 3249 -23 664 298 45 16 chr1 18876635 18876877 -223787476 - MIR SINE MIR 0 262 14 279 245 0 0 chr1 18876897 18876991 -223787362 + (CA)n Simple_repeat Simple_repeat 1 94 0 528 255 6 0 chr1 18877040 18877403 -223786950 + (CA)n Simple_repeat Simple_repeat 1 365 0 269 235 0 10 chr1 18877458 18877560 -223786793 + (CA)n Simple_repeat Simple_repeat 2 102 0 356 275 33 8 chr1 18877603 18877723 -223786630 - MIR SINE MIR -52 210 88 207 194 0 0 chr1 18877805 18877841 -223786512 + CT-rich Low_complexity Low_complexity 1 36 0 384 262 0 19 chr1 18878272 18878379 -223785974 - MER103 DNA DNA 0 166 62 512 333 49 11 chr1 18878616 18878848 -223785505 - MIR SINE MIR -12 250 11 465 369 137 10 chr1 18879005 18879398 -223784955 + L2 LINE L2 2827 3269 -3 313 182 20 20 chr1 18879427 18879526 -223784827 + (TGGA)n Simple_repeat Simple_repeat 1 99 0 243 326 0 0 chr1 18879539 18879625 -223784728 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 733 149 22 28 chr1 18879832 18880013 -223784340 + GA-rich Low_complexity Low_complexity 1 180 0 408 252 168 19 chr1 18880024 18880179 -223784174 + MIR SINE MIR 81 258 -4 252 272 62 25 chr1 18881162 18881243 -223783110 + MIR3 SINE MIR 93 176 -32 280 290 138 22 chr1 18881340 18881564 -223782789 - L2 LINE L2 -196 3076 2827 287 278 93 0 chr1 18882235 18882332 -223782021 - L2 LINE L2 -13 3259 3154 208 345 53 9 chr1 18882660 18882773 -223781580 + L2 LINE L2 2715 2832 -482 215 275 29 14 chr1 18882926 18882995 -223781358 + L2 LINE L2 2977 3046 -226 1908 193 112 0 chr1 18883087 18883470 -223780883 - MSTB LTR MaLR 0 426 1 759 185 6 21 chr1 18883487 18883499 -223780854 + GA-rich Low_complexity Low_complexity 1 12 -398 687 84 0 0 chr1 18883499 18883594 -223780759 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 759 185 6 21 chr1 18883594 18883904 -223780449 + GA-rich Low_complexity Low_complexity 12 410 0 418 347 95 16 chr1 18884451 18884820 -223779533 + L2 LINE L2 2855 3252 -20 294 331 110 47 chr1 18885799 18886261 -223778092 + L2 LINE L2 2554 3037 -235 195 317 33 17 chr1 18886418 18886478 -223777875 + L2 LINE L2 3211 3271 -1 565 317 50 72 chr1 18886574 18887139 -223777214 + L2 LINE L2 2717 3272 0 1919 130 173 35 chr1 18887187 18887360 -223776993 + MSTA LTR MaLR 1 149 -279 2001 96 13 32 chr1 18887360 18887674 -223776679 + AluSc SINE Alu 1 308 -1 1919 130 173 35 chr1 18887674 18887876 -223776477 + MSTA LTR MaLR 149 428 0 214 264 78 39 chr1 18888355 18888484 -223775869 - MIR SINE MIR -43 219 86 736 251 175 52 chr1 18888798 18889124 -223775229 + MLT1J2 LTR MaLR 85 450 0 412 354 17 6 chr1 18889267 18889442 -223774911 - MIR3 SINE MIR -15 193 17 289 273 74 50 chr1 18889775 18889968 -223774385 + MIR SINE MIR 16 216 -46 472 370 19 14 chr1 18890030 18890246 -223774107 + MIR SINE MIR 13 229 -33 1838 149 0 14 chr1 18891225 18891537 -223772816 + AluSx SINE Alu 1 308 0 1141 204 14 5 chr1 18891557 18891773 -223772580 + MER20 DNA MER1_type 2 219 0 2030 126 0 22 chr1 18892635 18892952 -223771401 + AluSg SINE Alu 1 310 0 190 286 234 0 chr1 18893097 18893174 -223771179 + MIR SINE MIR 117 211 -51 1268 225 80 46 chr1 18893235 18893671 -223770682 - L1ME3 LINE L1 -11 6151 5701 2096 60 7 53 chr1 18893698 18893998 -223770355 + AluY SINE Alu 1 286 -25 180 0 0 0 chr1 18893998 18894018 -223770335 + (TA)n Simple_repeat Simple_repeat 2 21 0 2135 222 117 6 chr1 18894987 18895533 -223768820 + MLT1E2 LTR MaLR 20 626 0 996 277 72 40 chr1 18895548 18895826 -223768527 + L2 LINE L2 2679 2947 -366 1891 159 3 3 chr1 18895826 18896127 -223768226 - AluJo SINE Alu -11 301 1 996 277 72 40 chr1 18896127 18896441 -223767912 + L2 LINE L2 2947 3292 -21 240 224 60 26 chr1 18897075 18897191 -223767162 - L1ME4a LINE L1 -9 6112 5993 374 149 21 21 chr1 18897198 18897292 -223767061 + CT-rich Low_complexity Low_complexity 1 94 0 753 251 90 5 chr1 18898054 18898265 -223766088 + MIR SINE MIR 17 245 -17 217 368 97 0 chr1 18898291 18898405 -223765948 - MIR SINE MIR -26 236 112 579 239 75 45 chr1 18898412 18898613 -223765740 + MER58C DNA MER1_type 7 213 -2 1956 128 0 0 chr1 18898785 18899095 -223765258 + AluSx SINE Alu 1 310 0 2029 145 82 20 chr1 18899611 18899794 -223764559 + THE1C LTR MaLR 1 171 -204 222 37 0 0 chr1 18899794 18899821 -223764532 + (TC)n Simple_repeat Simple_repeat 1 27 0 2029 145 82 20 chr1 18899821 18899989 -223764364 + THE1C LTR MaLR 171 374 -1 1363 217 104 30 chr1 18901638 18902071 -223762282 + MLT1C LTR MaLR 3 467 0 246 360 96 28 chr1 18902099 18902277 -223762076 - MIR SINE MIR -25 237 48 371 344 46 0 chr1 18903017 18903168 -223761185 - MIR SINE MIR -58 204 47 202 293 0 0 chr1 18904402 18904460 -223759893 - MIR SINE MIR -115 147 90 732 249 101 18 chr1 18904528 18904745 -223759608 - MIR SINE MIR -6 256 22 272 225 25 38 chr1 18904948 18905028 -223759325 - MIR SINE MIR -84 124 46 686 248 32 12 chr1 18905566 18905810 -223758543 + MIR SINE MIR 5 254 -8 199 316 36 72 chr1 18906450 18906589 -223757764 + L2 LINE L2 3025 3158 -114 202 300 93 52 chr1 18906677 18906947 -223757406 - L2 LINE L2 -32 3240 2960 280 278 35 35 chr1 18907103 18907218 -223757135 + MIR3 SINE MIR 3 117 -91 2176 147 23 0 chr1 18907239 18907587 -223756766 + THE1B LTR MaLR 1 356 -8 1599 226 68 14 chr1 18907624 18908062 -223756291 + MLT1C LTR MaLR 6 467 0 184 316 51 25 chr1 18908367 18908446 -223755907 - L3 LINE CR1 -1 1576 1496 3089 76 25 5 chr1 18908600 18909035 -223755318 + MLT2A1 LTR ERVL 1 444 0 357 309 158 19 chr1 18909038 18909509 -223754844 + L2 LINE L2 2743 3313 0 251 315 61 48 chr1 18909547 18909712 -223754641 - MIR SINE MIR -56 206 40 416 293 168 21 chr1 18909910 18910101 -223754252 - MIR SINE MIR -22 240 22 307 284 116 19 chr1 18910150 18910305 -223754048 - MIR SINE MIR -70 192 23 363 270 113 9 chr1 18911071 18911186 -223753167 - MIR SINE MIR -56 206 80 243 261 104 30 chr1 18911909 18912043 -223752310 - MIR SINE MIR -10 252 109 288 285 139 0 chr1 18912162 18912306 -223752047 - LTR16A LTR ERVL -174 276 113 237 150 0 0 chr1 18912372 18912412 -223751941 + MER1A DNA MER1_type 2 41 -486 3318 118 22 2 chr1 18912539 18913030 -223751323 + MER1A DNA MER1_type 29 529 0 191 299 89 25 chr1 18913198 18913355 -223750998 + MIR3 SINE MIR 38 204 -4 621 267 78 14 chr1 18913517 18913734 -223750619 + MIR SINE MIR 13 243 -19 213 196 0 0 chr1 18914431 18914477 -223749876 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 280 301 24 0 chr1 18914479 18914562 -223749791 - L2 LINE L2 -1 3271 3187 724 135 5 135 chr1 18914566 18914713 -223749640 + MLT1A2 LTR MaLR 1 121 -253 1939 160 33 30 chr1 18914713 18915076 -223749277 + THE1B LTR MaLR 1 364 0 724 135 5 135 chr1 18915076 18915113 -223749240 + MLT1A2 LTR MaLR 121 161 -213 237 83 0 0 chr1 18915136 18915172 -223749181 + (TC)n Simple_repeat Simple_repeat 2 37 0 781 229 5 32 chr1 18915178 18915366 -223748987 + MLT1A2 LTR MaLR 181 363 -11 256 361 129 13 chr1 18915691 18916001 -223748352 - L2 LINE L2 -529 2785 2440 256 279 68 60 chr1 18916389 18916574 -223747779 - MIR SINE MIR -39 223 41 * 873 227 36 23 chr1 18916572 18916792 -223747561 - MIR SINE MIR -32 230 8 225 235 235 0 chr1 18917207 18917309 -223747044 + MIR3 SINE MIR 11 136 -72 560 225 150 25 chr1 18917332 18917532 -223746821 - MIR SINE MIR -1 261 37 243 355 8 24 chr1 18917905 18918029 -223746324 + L3b LINE CR1 1146 1267 -316 396 279 132 0 chr1 18918238 18918367 -223745986 - MIR SINE MIR -114 148 3 406 145 48 124 chr1 18918671 18918816 -223745537 + MLT1H LTR MaLR 406 539 -10 273 75 0 0 chr1 18919702 18919742 -223744611 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 2254 128 0 7 chr1 18919912 18920217 -223744136 + AluSx SINE Alu 1 303 -9 294 294 43 0 chr1 18920376 18920468 -223743885 + MIR SINE MIR 39 134 -128 198 196 36 0 chr1 18920898 18920954 -223743399 - MIR SINE MIR -60 202 145 209 299 45 0 chr1 18921366 18921433 -223742920 - MIR3 SINE MIR -51 157 88 711 266 19 24 chr1 18921478 18921685 -223742668 + MIR SINE MIR 44 249 -13 180 0 0 0 chr1 18922063 18922083 -223742270 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 413 332 89 51 chr1 18922086 18922456 -223741897 - L2 LINE L2 -20 3293 2910 764 186 113 65 chr1 18922763 18923010 -223741343 - ORSL DNA AcHobo -13 262 4 784 246 27 32 chr1 18923791 18924011 -223740342 - MIR SINE MIR 0 262 44 238 300 0 14 chr1 18924243 18924313 -223740040 + CT-rich Low_complexity Low_complexity 3 71 0 396 0 0 0 chr1 18924950 18924994 -223739359 + (CA)n Simple_repeat Simple_repeat 2 45 0 197 170 170 0 chr1 18925350 18925403 -223738950 + MIR SINE MIR 102 163 -99 293 320 75 33 chr1 18925831 18926046 -223738307 - MIR SINE MIR -27 235 2 499 294 19 6 chr1 18927067 18927227 -223737126 - MIR3 SINE MIR -17 191 30 219 333 0 0 chr1 18927315 18927378 -223736975 + MIR SINE MIR 50 112 -150 584 201 137 26 chr1 18927486 18927720 -223736633 - LTR16C LTR ERVL 0 491 232 203 311 48 39 chr1 18928004 18928107 -223736246 + L3b LINE CR1 1342 1445 -138 2258 105 0 3 chr1 18928334 18928629 -223735724 + AluSx SINE Alu 1 294 -18 192 77 0 0 chr1 18928648 18928674 -223735679 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1642 218 21 5 chr1 18928688 18929069 -223735284 + L1ME1 LINE L1 5776 6162 -4 2433 94 3 0 chr1 18929074 18929382 -223734971 - AluY SINE Alu -2 309 1 21 57 0 0 chr1 18929390 18929425 -223734928 + AT_rich Low_complexity Low_complexity 1 35 0 393 272 103 46 chr1 18929496 18929624 -223734729 + MIR SINE MIR 7 151 -111 1683 174 41 46 chr1 18929624 18930016 -223734337 + MLT1B LTR MaLR 1 390 0 393 272 103 46 chr1 18930016 18930082 -223734271 + MIR SINE MIR 151 212 -50 670 277 106 39 chr1 18930165 18930685 -223733668 - MLT1L LTR MaLR -31 584 6 378 320 193 0 chr1 18930711 18930908 -223733445 - MIR SINE MIR -24 238 4 838 259 11 34 chr1 18931647 18931910 -223732443 + MIR SINE MIR 6 262 0 219 343 0 0 chr1 18931910 18931977 -223732376 + MER5A DNA MER1_type 91 157 -32 437 252 161 7 chr1 18933543 18933686 -223730667 + MIR SINE MIR 50 214 -48 215 305 153 8 chr1 18934108 18934226 -223730127 + L3b LINE CR1 1221 1355 -228 446 305 39 26 chr1 18934930 18935084 -223729269 + MIR SINE MIR 41 196 -66 471 298 46 32 chr1 18935789 18936007 -223728346 - MIR SINE MIR -16 246 26 4556 63 3 2 chr1 18936225 18936815 -223727538 - LTR10C LTR ERV1 0 591 1 2055 168 2 45 chr1 18936815 18937215 -223727138 + MLT1B LTR MaLR 8 390 0 3013 43 0 0 chr1 18937268 18937642 -223726711 + L1PA5 LINE L1 5770 6143 -11 681 218 131 51 chr1 18937657 18937932 -223726421 + L1MC/D LINE L1 5291 5587 -2221 324 195 13 52 chr1 18937962 18938116 -223726237 + GA-rich Low_complexity Low_complexity 3 150 0 528 329 12 6 chr1 18938117 18938281 -223726072 + MIR SINE MIR 20 184 -78 830 201 5 10 chr1 18938635 18939016 -223725337 + GA-rich Low_complexity Low_complexity 1 379 0 361 304 0 0 chr1 18939946 18940048 -223724305 + MIR SINE MIR 48 149 -113 340 303 58 19 chr1 18940314 18940469 -223723884 - MIR SINE MIR -48 214 54 252 0 0 0 chr1 18940771 18940799 -223723554 + (GA)n Simple_repeat Simple_repeat 2 29 0 2221 116 26 63 chr1 18941230 18941608 -223722745 + THE1B LTR MaLR 1 364 0 1924 181 55 0 chr1 18942144 18942547 -223721806 - L1MB2 LINE L1 -4 6167 5743 1065 174 62 13 chr1 18942547 18942771 -223721582 - L1MB2 LINE L1 -318 5853 5619 397 304 105 25 chr1 18943754 18944164 -223720189 - L2 LINE L2 -214 3058 2600 545 305 99 3 chr1 18944324 18944786 -223719567 - L2 LINE L2 -250 3063 2560 389 248 9 28 chr1 18945155 18945264 -223719089 - L2 LINE L2 0 3313 3207 1190 276 119 17 chr1 18945293 18945815 -223718538 + MLT1E LTR MaLR 1 575 -18 691 190 127 19 chr1 18945864 18946022 -223718331 + FAM SINE Alu 1 175 0 633 274 6 0 chr1 18946063 18946227 -223718126 - MIR SINE MIR -90 172 8 292 208 115 25 chr1 18946612 18946737 -223717616 - MIR SINE MIR -63 145 8 253 167 21 0 chr1 18946914 18946962 -223717391 + L2 LINE L2 3264 3312 -1 950 153 109 6 chr1 18947161 18947344 -223717009 + MER31A LTR ERV1 1 202 -283 960 149 106 5 chr1 18947345 18947533 -223716820 + MER2 DNA MER2_type 4 210 -135 435 230 77 20 chr1 18947652 18947799 -223716554 + MER31B LTR ERV1 302 651 -10 207 0 0 0 chr1 18947799 18947822 -223716531 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 706 301 61 24 chr1 18948770 18948934 -223715419 - MIR SINE MIR -3 259 82 2150 127 19 24 chr1 18948934 18949311 -223715042 - THE1C LTR MaLR 0 375 1 706 301 61 24 chr1 18949311 18949392 -223714961 - MIR SINE MIR -180 82 5 306 0 0 0 chr1 18949564 18949598 -223714755 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1817 246 80 29 chr1 18950617 18951171 -223713182 + MLT1E LTR MaLR 15 593 0 290 247 0 14 chr1 18951276 18951349 -223713004 - MIR SINE MIR -121 87 16 2147 162 10 13 chr1 18952394 18952777 -223711576 + MLT1B LTR MaLR 3 384 -6 612 295 14 48 chr1 18952844 18953054 -223711299 + MIR SINE MIR 1 203 -59 329 279 25 0 chr1 18953070 18953149 -223711204 - L2 LINE L2 -2 3270 3190 213 178 0 0 chr1 18953176 18953221 -223711132 + T-rich Low_complexity Low_complexity 1 45 0 214 255 117 82 chr1 18953306 18953502 -223710851 + L2 LINE L2 3051 3253 -19 308 282 81 40 chr1 18953773 18953922 -223710431 - L3 LINE CR1 -6 1571 1417 338 217 79 98 chr1 18954070 18954241 -223710112 - MIR SINE MIR -62 146 34 552 341 29 0 chr1 18954845 18955050 -223709303 + MIR SINE MIR 20 230 -32 235 344 33 33 chr1 18956144 18956266 -223708087 + L3b LINE CR1 1209 1330 -253 331 382 29 0 chr1 18956680 18956850 -223707503 + MIR SINE MIR 85 259 -3 230 140 40 20 chr1 18956979 18957029 -223707324 + C-rich Low_complexity Low_complexity 3 53 0 345 24 0 0 chr1 18957297 18957339 -223707014 + (TG)n Simple_repeat Simple_repeat 2 43 0 396 269 208 0 chr1 18958230 18958379 -223705974 - MER5A DNA MER1_type -6 183 4 272 264 203 25 chr1 18958594 18958757 -223705596 - MIR SINE MIR -6 256 65 471 328 100 13 chr1 18959208 18959437 -223704916 - MIR SINE MIR -8 254 6 531 274 38 6 chr1 18959504 18959661 -223704692 - MIR3 SINE MIR 0 208 47 660 258 70 55 chr1 18960030 18960301 -223704052 + L1MC4a LINE L1 5523 5797 -2011 747 250 31 0 chr1 18960325 18960517 -223703836 + MIR SINE MIR 19 216 -46 2362 99 3 10 chr1 18960550 18960853 -223703500 - AluSq SINE Alu -12 301 1 342 278 104 9 chr1 18960871 18960986 -223703367 + L1MC4a LINE L1 5801 5926 -1882 1110 126 0 19 chr1 18961310 18961469 -223702884 - FRAM SINE Alu -24 152 1 2330 101 0 3 chr1 18961480 18961778 -223702575 - AluSx SINE Alu -15 297 1 2818 171 19 7 chr1 18961787 18962326 -223702027 - L1MB2 LINE L1 -2 6169 5625 222 37 0 0 chr1 18962783 18962810 -223701543 + (TC)n Simple_repeat Simple_repeat 1 27 0 1251 238 127 57 chr1 18963457 18963970 -223700383 - MLT1H LTR MaLR 0 549 1 201 94 0 0 chr1 18964336 18964368 -223699985 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 493 271 52 102 chr1 18964370 18964476 -223699877 - L2 LINE L2 -462 2852 2742 2517 49 3 16 chr1 18964476 18964782 -223699571 - AluYb8 SINE Alu -16 302 1 493 271 52 102 chr1 18964782 18965096 -223699257 - L2 LINE L2 -572 2742 2453 774 261 38 38 chr1 18965099 18965337 -223699016 - MIR SINE MIR -10 252 15 194 254 146 62 chr1 18965350 18965480 -223698873 - L2 LINE L2 -865 2449 2309 247 297 36 65 chr1 18965648 18965716 -223698637 + MER5B DNA MER1_type 7 71 -107 1942 175 0 3 chr1 18965716 18966019 -223698334 + AluSx SINE Alu 1 302 -10 247 297 36 65 chr1 18966019 18966088 -223698265 + MER5B DNA MER1_type 71 140 -38 518 319 83 13 chr1 18966514 18966743 -223697610 + MIR SINE MIR 18 262 0 2068 153 0 31 chr1 18966748 18967069 -223697284 - AluJb SINE Alu -1 311 1 214 282 27 27 chr1 18967215 18967325 -223697028 + L2 LINE L2 2866 2975 -339 499 304 52 59 chr1 18967525 18967831 -223696522 - MLT1H LTR MaLR -195 354 51 840 172 32 6 chr1 18967905 18968062 -223696291 + MER20 DNA MER1_type 34 194 -25 202 161 0 32 chr1 18968189 18968251 -223696102 + CT-rich Low_complexity Low_complexity 2 61 0 385 260 110 13 chr1 18969021 18969175 -223695178 + MIR SINE MIR 76 244 -18 291 215 69 132 chr1 18969334 18969478 -223694875 + MER5A DNA MER1_type 54 188 -1 206 231 31 15 chr1 18969969 18970034 -223694319 + L2 LINE L2 3016 3081 -191 1539 221 40 42 chr1 18970500 18971003 -223693350 - MLT1D LTR MaLR -3 502 1 377 292 153 38 chr1 18971011 18971220 -223693133 - MIR SINE MIR -12 250 18 504 202 53 9 chr1 18972446 18972560 -223691793 + L2 LINE L2 3194 3312 -1 333 68 0 0 chr1 18973091 18973135 -223691218 + (CA)n Simple_repeat Simple_repeat 1 44 0 409 320 146 19 chr1 18973242 18973448 -223690905 + MIR SINE MIR 31 262 0 2695 42 0 6 chr1 18973602 18973915 -223690438 + AluY SINE Alu 1 311 0 197 274 9 127 chr1 18974050 18974262 -223690091 - L2 LINE L2 -38 3275 3089 372 269 103 45 chr1 18974292 18974448 -223689905 - MIR SINE MIR -91 171 7 907 314 80 32 chr1 18974451 18974913 -223689440 - LTR16C LTR ERVL 0 491 8 2034 142 13 0 chr1 18975034 18975337 -223689016 - AluSg SINE Alu -3 307 1 323 336 54 13 chr1 18976208 18976313 -223688040 + MIR SINE MIR 58 172 -90 444 115 26 0 chr1 18976313 18976391 -223687962 + MADE1 DNA Mariner 1 80 0 323 336 54 13 chr1 18976391 18976434 -223687919 + MIR SINE MIR 172 212 -50 305 325 20 13 chr1 18976646 18976797 -223687556 - MIR SINE MIR -28 234 83 1807 204 55 20 chr1 18976801 18977241 -223687112 + MLT1C LTR MaLR 1 455 -12 493 345 36 14 chr1 18977877 18978097 -223686256 - MIR SINE MIR -18 244 20 348 332 55 14 chr1 18978680 18978900 -223685453 + L3 LINE CR1 1246 1474 -103 452 222 34 8 chr1 18979952 18980069 -223684284 + MIR SINE MIR 56 175 -87 220 319 39 58 chr1 18980072 18980279 -223684074 - MIR SINE MIR -27 235 33 243 0 0 0 chr1 18980576 18980603 -223683750 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 254 245 47 57 chr1 18980710 18980816 -223683537 + MIR SINE MIR 89 193 -69 196 211 0 0 chr1 18981418 18981456 -223682897 - L2 LINE L2 -4 3268 3231 445 338 158 27 chr1 18981506 18982166 -223682187 - L2 LINE L2 -556 2758 2013 1783 161 54 0 chr1 18982177 18982457 -223681896 + AluSx SINE Alu 1 295 -17 370 306 82 31 chr1 18982655 18982851 -223681502 + MIR SINE MIR 51 256 -6 510 258 141 44 chr1 18984504 18984802 -223679551 - L2 LINE L2 -1 3271 2945 404 308 94 9 chr1 18985193 18985417 -223678936 + MIR SINE MIR 20 262 0 372 217 19 4 chr1 18985994 18986092 -223678261 - MIR SINE MIR -62 146 63 474 289 53 0 chr1 18986981 18987168 -223677185 + L2 LINE L2 2461 2657 -657 834 279 67 13 chr1 18987177 18987553 -223676800 + L2 LINE L2 2816 3211 -102 1540 214 58 16 chr1 18987576 18988005 -223676348 - L1MDa LINE L1 -5083 1457 1011 436 168 0 59 chr1 18988182 18988208 -223676145 + L2 LINE L2 3218 3244 -69 2017 130 144 8 chr1 18988208 18988584 -223675769 + MSTA LTR MaLR 1 427 -1 436 168 0 59 chr1 18988584 18988658 -223675695 + L2 LINE L2 3244 3312 -1 382 306 140 11 chr1 18988676 18988862 -223675491 - MIR SINE MIR -33 229 20 237 274 16 0 chr1 18990120 18990182 -223674171 + MER5A DNA MER1_type 44 106 -83 337 326 121 8 chr1 18990426 18990558 -223673795 + MIR SINE MIR 106 252 -10 526 281 81 41 chr1 18990611 18990832 -223673521 - MIR SINE MIR -17 245 16 288 226 26 17 chr1 18991644 18991730 -223672623 + MIR SINE MIR 111 196 -66 211 329 35 0 chr1 18992364 18992449 -223671904 - MIR SINE MIR -3 259 172 541 251 25 52 chr1 18992452 18992697 -223671656 + MLT1J2 LTR MaLR 1 237 -172 324 181 0 60 chr1 18992730 18992813 -223671540 + MLT1J2 LTR MaLR 373 450 0 209 293 35 0 chr1 18992833 18992891 -223671462 - MIR SINE MIR -112 150 91 2267 169 21 7 chr1 18993714 18994134 -223670219 + MSTB LTR MaLR 1 426 0 256 313 12 0 chr1 18994232 18994312 -223670041 - MIR3 SINE MIR -9 199 119 2190 134 0 0 chr1 18994347 18994637 -223669716 + AluSx SINE Alu 1 290 -22 436 234 32 24 chr1 18994771 18994912 -223669441 - MIR SINE MIR -64 144 2 208 283 0 0 chr1 18995149 18995202 -223669151 + L2 LINE L2 3261 3313 0 1086 89 0 19 chr1 18995590 18995747 -223668606 - L1PA10 LINE L1 -8 6160 6007 236 64 6 0 chr1 18995747 18995785 -223668568 + L1PA10 LINE L1 5941 5980 -175 330 246 79 26 chr1 18996019 18996133 -223668220 + MIR3 SINE MIR 35 154 -54 445 176 88 123 chr1 18996457 18996565 -223667788 - MIR SINE MIR 0 262 161 1409 154 9 110 chr1 18996565 18996884 -223667469 - AluJo SINE Alu -13 289 3 445 176 88 123 chr1 18996884 18996945 -223667408 - MIR SINE MIR -101 161 99 284 301 62 20 chr1 18997316 18997462 -223666891 + MIR3 SINE MIR 9 160 -48 186 43 0 0 chr1 18997547 18997570 -223666783 + (TG)n Simple_repeat Simple_repeat 1 23 0 459 273 23 41 chr1 18997582 18997754 -223666599 + MIR3 SINE MIR 7 175 -33 464 205 293 5 chr1 18997903 18998108 -223666245 - ORSL DNA AcHobo 0 275 12 1269 242 51 59 chr1 18998234 18998742 -223665611 + MLT1D LTR MaLR 1 504 -1 279 0 0 0 chr1 18998975 18999006 -223665347 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6721 57 0 0 chr1 18999006 18999943 -223664410 - L1PA6 LINE L1 -18 6136 5201 356 243 189 0 chr1 19000618 19000729 -223663624 + MIR SINE MIR 94 225 -37 261 343 95 36 chr1 19000774 19001133 -223663220 - L2 LINE L2 0 3272 2893 342 0 0 0 chr1 19001323 19001361 -223662992 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 285 279 87 10 chr1 19001380 19001484 -223662869 - L2 LINE L2 -52 3220 3109 243 314 0 57 chr1 19001553 19001677 -223662676 + MIR SINE MIR 13 129 -133 922 344 39 11 chr1 19001704 19002059 -223662294 - LTR16A LTR ERVL -58 392 28 285 271 126 12 chr1 19002259 19002428 -223661925 - L2 LINE L2 -336 2977 2798 426 269 88 96 chr1 19002535 19002795 -223661558 - MIR SINE MIR -1 261 4 980 275 27 52 chr1 19003375 19003552 -223660801 + L2 LINE L2 2881 3061 -252 1345 234 122 36 chr1 19003552 19004021 -223660332 + MLT1J LTR MaLR 3 511 0 980 275 27 52 chr1 19004021 19004286 -223660067 + L2 LINE L2 3061 3312 -1 227 311 131 16 chr1 19004289 19004411 -223659942 - MIR SINE MIR -19 243 108 1102 200 29 33 chr1 19004615 19004663 -223659690 + L1MB7 LINE L1 5286 5333 -851 1796 158 3 16 chr1 19004663 19004967 -223659386 + AluJb SINE Alu 1 300 -12 1102 200 29 33 chr1 19004967 19005301 -223659052 + L1MB7 LINE L1 5333 5667 -517 2239 100 6 3 chr1 19005301 19005612 -223658741 + AluSp SINE Alu 1 312 -1 1102 200 29 33 chr1 19005612 19006017 -223658336 + L1MB7 LINE L1 5667 6175 -9 1816 150 10 19 chr1 19006139 19006452 -223657901 + AluJo SINE Alu 1 310 -2 546 266 128 15 chr1 19006459 19006662 -223657691 + MIR SINE MIR 31 256 -6 380 333 68 42 chr1 19006727 19006964 -223657389 - L2 LINE L2 0 3272 3030 211 259 17 17 chr1 19007087 19007145 -223657208 - L3 LINE CR1 -3 1574 1517 385 323 37 12 chr1 19007565 19007729 -223656624 - MIR SINE MIR -91 171 4 307 284 90 47 chr1 19008349 19008564 -223655789 - MIR SINE MIR -35 227 4 2066 126 10 0 chr1 19008771 19009065 -223655288 - AluSx SINE Alu -15 297 1 347 269 91 91 chr1 19009123 19009298 -223655055 + MIR SINE MIR 86 260 -2 364 191 0 56 chr1 19010225 19010314 -223654039 + MIR SINE MIR 68 151 -111 2055 104 0 0 chr1 19010958 19011236 -223653117 + AluSx SINE Alu 26 303 -9 417 90 0 0 chr1 19011351 19011418 -223652935 + (TC)n Simple_repeat Simple_repeat 1 67 0 255 264 0 0 chr1 19011488 19011579 -223652774 + (TG)n Simple_repeat Simple_repeat 2 92 0 2962 171 16 35 chr1 19012233 19012246 -223652107 + MER74A LTR ERVL 1 13 -545 1837 159 3 13 chr1 19012246 19012548 -223651805 - AluJo SINE Alu -13 299 1 2962 171 16 35 chr1 19012548 19013103 -223651250 + MER74A LTR ERVL 13 558 0 265 378 55 0 chr1 19013490 19013617 -223650736 + L2 LINE L2 3139 3272 0 246 288 31 69 chr1 19014243 19014403 -223649950 + MIR SINE MIR 95 248 -14 422 294 0 0 chr1 19014538 19014647 -223649706 + MIR SINE MIR 109 217 -45 204 283 66 75 chr1 19014796 19014902 -223649451 - MER5A DNA MER1_type -24 165 61 2143 130 0 0 chr1 19014902 19015201 -223649152 + AluSx SINE Alu 1 299 -13 1575 102 37 0 chr1 19015203 19015419 -223648934 + AluSg/x SINE Alu 83 306 -4 766 114 0 21 chr1 19015448 19015588 -223648765 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 204 40 0 0 chr1 19015588 19015613 -223648740 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 253 290 40 10 chr1 19015835 19015935 -223648418 + MIR SINE MIR 94 196 -66 349 344 19 19 chr1 19016419 19016579 -223647774 + Charlie8 DNA MER1_type 26 185 -2232 602 289 137 0 chr1 19016814 19017018 -223647335 - MIR SINE MIR -3 259 28 187 262 0 71 chr1 19021450 19021534 -223642819 + MIR SINE MIR 111 188 -74 311 317 50 31 chr1 19022347 19022508 -223641845 - MER117 DNA MER1_type -2 195 32 668 262 129 52 chr1 19022896 19023182 -223641171 - L2 LINE L2 0 3313 3006 348 266 55 18 chr1 19073702 19073811 -223590542 + MIR SINE MIR 91 203 -59 2832 90 3 0 chr1 19073972 19074326 -223590027 - THE1A LTR MaLR 0 355 1 832 249 119 57 chr1 19074472 19074950 -223589403 - MER34 LTR ERV1 -4 538 26 1799 134 49 14 chr1 19074950 19075234 -223589119 - AluJo SINE Alu -18 294 1 832 249 119 57 chr1 19075234 19075261 -223589092 - MER34 LTR ERV1 -516 26 2 280 227 47 47 chr1 19075569 19075697 -223588656 - LTR16C LTR ERVL -1 490 363 * 3908 174 96 1 chr1 19075660 19076408 -223587945 + LTR1B LTR ERV1 8 826 0 689 225 86 44 chr1 19076408 19076689 -223587664 - LTR16C LTR ERVL -74 417 98 248 232 0 0 chr1 19076867 19076923 -223587430 - L1MC4 LINE L1 0 8042 7987 3821 209 66 15 chr1 19076925 19077839 -223586514 - L1MC4 LINE L1 -142 7900 6941 271 250 0 0 chr1 19077884 19077898 -223586455 - LTR16A1 LTR ERVL -135 322 309 2369 83 0 3 chr1 19077898 19078198 -223586155 + AluY SINE Alu 1 299 -12 271 250 0 0 chr1 19078198 19078243 -223586110 - LTR16A1 LTR ERVL -147 310 263 1075 229 19 0 chr1 19078447 19078661 -223585692 - MER58A DNA MER1_type -6 218 1 1032 199 4 61 chr1 19078967 19079126 -223585227 + L1MB7 LINE L1 4935 5102 -1044 2268 64 0 3 chr1 19079126 19079571 -223584782 + AluY SINE Alu 1 444 0 1032 199 4 61 chr1 19079571 19079669 -223584684 + L1MB7 LINE L1 5102 5179 -967 2158 172 42 8 chr1 19079669 19080053 -223584300 + MLT2C1 LTR ERVL 1 397 0 1032 199 4 61 chr1 19080053 19080070 -223584283 + L1MB7 LINE L1 5179 5195 -951 2048 132 6 13 chr1 19080071 19080382 -223583971 + AluSc SINE Alu 1 309 0 410 125 0 14 chr1 19080399 19080471 -223583882 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 4599 164 65 13 chr1 19080471 19081400 -223582953 + L1MB7 LINE L1 5176 6155 -29 2109 157 29 35 chr1 19081400 19081777 -223582576 - THE1C LTR MaLR 0 375 1 4599 164 65 13 chr1 19081777 19081809 -223582544 + L1MB7 LINE L1 6155 6184 0 873 247 160 34 chr1 19081882 19082238 -223582115 + MLT1J LTR MaLR 53 453 -58 679 226 89 104 chr1 19082263 19082500 -223581853 - MLT1G3 LTR MaLR -70 525 210 1439 161 24 134 chr1 19082500 19082835 -223581518 - AluJb SINE Alu -1 301 4 679 226 89 104 chr1 19082835 19082967 -223581386 - MLT1G3 LTR MaLR -385 210 78 315 194 0 0 chr1 19082967 19083039 -223581314 - L1MEc LINE L1 -3515 2700 2629 1468 218 49 137 chr1 19083050 19083621 -223580732 - MLT1D LTR MaLR -2 503 1 1077 226 84 10 chr1 19083621 19083918 -223580435 - L1MEc LINE L1 -3591 2624 2306 796 112 7 132 chr1 19083920 19084072 -223580281 + AluJo SINE Alu 2 134 -178 4082 147 63 6 chr1 19084081 19084760 -223579593 + L1PA16 LINE L1 5433 6150 -16 2485 260 53 31 chr1 19084760 19085773 -223578580 - L1MEc LINE L1 -4044 2352 1317 1842 145 7 3 chr1 19085773 19086056 -223578297 + AluJb SINE Alu 11 294 -18 389 290 126 33 chr1 19086101 19086284 -223578069 + MIR SINE MIR 57 256 -6 216 0 0 0 chr1 19086981 19087005 -223577348 + (A)n Simple_repeat Simple_repeat 1 24 0 2249 39 0 0 chr1 19087063 19087363 -223576990 - AluY SINE Alu 0 328 29 474 39 39 0 chr1 19087925 19088002 -223576351 + (TG)n Simple_repeat Simple_repeat 2 81 0 339 224 31 20 chr1 19088944 19089042 -223575311 + MIR SINE MIR 81 179 -83 206 239 14 0 chr1 19089090 19089161 -223575192 + (ATG)n Simple_repeat Simple_repeat 1 72 0 482 343 5 25 chr1 19089332 19089533 -223574820 - MIR SINE MIR -46 216 20 1850 132 10 51 chr1 19089946 19090241 -223574112 + AluSc SINE Alu 1 283 -26 285 230 59 20 chr1 19090587 19090793 -223573560 - MLT1G LTR MaLR -249 300 22 4243 234 94 39 chr1 19091509 19092810 -223571543 + L1MB7 LINE L1 307 1536 -5289 2180 128 0 3 chr1 19092810 19093114 -223571239 + AluSc SINE Alu 1 303 -6 4243 234 94 39 chr1 19093114 19093652 -223570701 + L1MB7 LINE L1 1536 2043 -4782 487 145 0 0 chr1 19093652 19093728 -223570625 + MADE1 DNA Mariner 4 79 -1 4243 234 94 39 chr1 19093728 19093760 -223570593 + L1MB7 LINE L1 2043 2072 -4753 7212 132 54 20 chr1 19093760 19094951 -223569402 - Tigger3b DNA MER2_type 0 1231 1 4243 234 94 39 chr1 19094951 19095322 -223569031 + L1MB7 LINE L1 2072 2802 -4023 * 4769 169 56 15 chr1 19095319 19097068 -223567285 + L1MB7 LINE L1 4857 6682 0 1846 296 91 43 chr1 19097072 19097221 -223567132 + L1ME3A LINE L1 3961 4101 -2069 779 31 0 31 chr1 19097221 19097318 -223567035 - L1PA8 LINE L1 -1 6171 6078 1846 296 91 43 chr1 19097318 19098115 -223566238 + L1ME3A LINE L1 4101 4858 -1312 4143 90 19 5 chr1 19098115 19098679 -223565674 - L1PB2 LINE L1 0 6151 5580 1846 296 91 43 chr1 19098679 19099019 -223565334 + L1ME3A LINE L1 4858 5180 -990 2091 134 13 0 chr1 19099019 19099326 -223565027 + AluSx SINE Alu 1 311 -1 1846 296 91 43 chr1 19099326 19099911 -223564442 + L1ME3A LINE L1 5180 5947 -223 426 195 0 0 chr1 19100153 19100240 -223564113 + CT-rich Low_complexity Low_complexity 1 87 0 399 277 132 60 chr1 19100374 19100609 -223563744 - L2 LINE L2 -217 3055 2804 585 174 35 9 chr1 19101209 19101324 -223563029 + ORSL DNA AcHobo 1 118 -157 864 131 69 14 chr1 19101449 19101594 -223562759 + ORSL DNA AcHobo 119 271 -4 429 20 0 0 chr1 19102295 19102345 -223562008 + (CA)n Simple_repeat Simple_repeat 2 51 0 1061 178 27 5 chr1 19102623 19102808 -223561545 - MER5A DNA MER1_type 0 189 1 889 113 21 103 chr1 19102905 19103099 -223561254 - L1PA6 LINE L1 0 6154 5977 278 304 43 29 chr1 19103357 19103495 -223560858 - MIR SINE MIR -117 145 6 367 267 156 75 chr1 19103502 19103873 -223560480 - MLT1L LTR MaLR 0 615 215 197 292 0 97 chr1 19104085 19104157 -223560196 - L2 LINE L2 0 3272 3208 494 267 59 7 chr1 19104159 19104294 -223560059 + MIR SINE MIR 2 143 -119 21 0 0 0 chr1 19104603 19104624 -223559729 + GC_rich Low_complexity Low_complexity 1 21 0 1672 173 3 7 chr1 19104703 19104998 -223559355 + AluJb SINE Alu 1 294 -18 290 209 35 35 chr1 19104999 19105085 -223559268 - MIR SINE MIR -93 169 84 599 236 116 33 chr1 19105729 19105824 -223558529 - MIR SINE MIR 0 262 176 2105 157 36 33 chr1 19105824 19106187 -223558166 + THE1B LTR MaLR 1 364 0 599 236 116 33 chr1 19106187 19106332 -223558021 - MIR SINE MIR -86 176 2 282 264 81 0 chr1 19107411 19107498 -223556855 - MIR SINE MIR -8 254 161 * 638 352 97 26 chr1 19107497 19108139 -223556214 + L2 LINE L2 2239 2925 -389 2071 214 30 28 chr1 19108400 19108900 -223555453 + MLT1D LTR MaLR 1 501 -4 336 206 0 0 chr1 19108908 19108971 -223555382 - MIR SINE MIR -124 138 76 393 314 118 10 chr1 19109504 19109708 -223554645 - MIR SINE MIR -17 245 20 307 210 3 38 chr1 19110279 19110364 -223553989 + MLT1F LTR MaLR 472 542 0 2466 65 0 0 chr1 19110670 19110976 -223553377 + AluY SINE Alu 1 306 -5 629 315 110 27 chr1 19111307 19111716 -223552637 + MLT1J LTR MaLR 8 450 -61 415 305 80 33 chr1 19112200 19112413 -223551940 + MIR SINE MIR 28 250 -12 213 273 45 80 chr1 19112662 19112750 -223551603 + L2 LINE L2 3182 3266 -6 374 320 74 11 chr1 19113042 19113217 -223551136 + MIR3 SINE MIR 20 205 -3 263 298 126 7 chr1 19113486 19113637 -223550716 - L2 LINE L2 -3 3269 3101 305 176 0 0 chr1 19113722 19113773 -223550580 - MER81 DNA DNA -62 52 2 273 180 0 49 chr1 19114901 19114962 -223549391 - L2 LINE L2 -2 3311 3254 211 211 0 19 chr1 19115062 19115114 -223549239 + CT-rich Low_complexity Low_complexity 2 52 0 792 333 20 4 chr1 19115124 19115376 -223548977 - MIR SINE MIR -5 257 2 466 326 27 11 chr1 19115530 19115714 -223548639 + MIR SINE MIR 47 233 -29 795 231 74 0 chr1 19115749 19115952 -223548401 + LTR16A1 LTR ERVL 207 424 -33 1955 130 0 0 chr1 19116085 19116362 -223547991 + AluSq SINE Alu 1 277 -36 756 61 0 0 chr1 19116363 19116461 -223547892 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 1224 59 0 32 chr1 19116461 19116647 -223547706 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 255 224 17 0 chr1 19117171 19117229 -223547124 - L2 LINE L2 0 3313 3255 492 291 63 26 chr1 19117299 19117524 -223546829 + MIR SINE MIR 22 259 -3 193 348 95 40 chr1 19117604 19117900 -223546453 + L2 LINE L2 2553 2864 -450 1049 244 62 12 chr1 19118076 19118396 -223545957 - MLT1C LTR MaLR -128 339 4 406 259 82 10 chr1 19118402 19118546 -223545807 - MIR SINE MIR -58 150 6 495 323 69 11 chr1 19118590 19118779 -223545574 - MIR SINE MIR -53 209 10 222 200 0 0 chr1 19118966 19119011 -223545342 + (CA)n Simple_repeat Simple_repeat 1 45 0 232 281 0 0 chr1 19119628 19119685 -223544668 + MIR SINE MIR 87 143 -65 226 320 130 0 chr1 19119704 19119804 -223544549 + MIR SINE MIR 2 114 -148 1933 202 47 55 chr1 19119830 19120339 -223544014 + MLT1D LTR MaLR 1 505 0 1314 168 86 57 chr1 19120543 19120823 -223543530 - AluJo SINE Alu -24 288 1 540 223 85 8 chr1 19120837 19120967 -223543386 + L2 LINE L2 3168 3307 -6 217 139 0 0 chr1 19121063 19121099 -223543254 + MIR SINE MIR 109 144 -64 752 235 92 41 chr1 19121656 19121852 -223542501 - MER63A DNA MER1_type -4 206 1 242 361 92 0 chr1 19122487 19122617 -223541736 - MIR SINE MIR -102 160 19 827 117 0 8 chr1 19123139 19123259 -223541094 + AluSg/x SINE Alu 186 304 -6 219 139 0 0 chr1 19123551 19123587 -223540766 + (CCCA)n Simple_repeat Simple_repeat 1 36 0 522 294 31 6 chr1 19123604 19123767 -223540586 + L2 LINE L2 2918 3084 -229 408 338 108 7 chr1 19123961 19124266 -223540087 - L2 LINE L2 -18 3254 2919 183 301 188 25 chr1 19124286 19124648 -223539705 - L2 LINE L2 -568 2746 2326 225 196 29 69 chr1 19124733 19124835 -223539518 + (CAGGG)n Simple_repeat Simple_repeat 3 100 0 266 263 32 63 chr1 19124886 19124981 -223539372 - MIR3 SINE MIR -24 184 93 322 270 87 16 chr1 19125202 19125328 -223539025 - MLT1I LTR MaLR -266 143 9 328 335 95 6 chr1 19125350 19125529 -223538824 - MIR SINE MIR -21 241 47 326 188 113 0 chr1 19126100 19126180 -223538173 + L2 LINE L2 3225 3313 0 615 286 12 7 chr1 19126963 19127155 -223537198 - MIR SINE MIR -65 143 3 353 325 204 5 chr1 19127307 19127498 -223536855 - MIR SINE MIR -11 251 23 2002 141 20 0 chr1 19127978 19128343 -223536010 + AluSx SINE Alu 1 371 0 265 189 156 0 chr1 19128426 19128516 -223535837 - MIR SINE MIR -49 159 42 523 298 259 18 chr1 19128863 19130179 -223534174 + L2 LINE L2 1329 2962 -352 246 359 28 69 chr1 19130310 19130455 -223533898 + L2 LINE L2 3134 3272 0 318 311 10 0 chr1 19130526 19130629 -223533724 - MIR SINE MIR -112 150 47 455 245 19 0 chr1 19130965 19131071 -223533282 - MIR SINE MIR -71 137 30 194 167 0 48 chr1 19131299 19131341 -223533012 + L2 LINE L2 3153 3192 -80 283 374 25 10 chr1 19131458 19131656 -223532697 + L1MC5 LINE L1 7727 7927 -34 250 329 24 0 chr1 19131731 19131816 -223532537 - MIR SINE MIR -12 250 164 313 332 80 30 chr1 19131941 19132140 -223532213 - MARNA DNA Mariner -133 453 245 639 290 54 84 chr1 19132482 19132924 -223531429 + L2 LINE L2 2824 3252 -20 327 243 43 0 chr1 19132951 19133021 -223531332 + MIR SINE MIR 102 174 -88 751 278 50 73 chr1 19133021 19133177 -223531176 - L2 LINE L2 -1 3312 3154 3018 116 118 27 chr1 19133177 19133660 -223530693 - MER1A DNA MER1_type 0 527 1 751 278 50 73 chr1 19133660 19133748 -223530605 - L2 LINE L2 -159 3154 3066 2240 92 3 0 chr1 19133748 19134042 -223530311 - AluSp SINE Alu -18 295 1 751 278 50 73 chr1 19134042 19134232 -223530121 - L2 LINE L2 -247 3066 2887 236 250 0 17 chr1 19135012 19135072 -223529281 + GA-rich Low_complexity Low_complexity 1 59 0 26 0 0 0 chr1 19135228 19135254 -223529099 + GC_rich Low_complexity Low_complexity 1 26 0 979 319 72 12 chr1 19135653 19135930 -223528423 - L2 LINE L2 0 3313 3001 1615 106 18 0 chr1 19135930 19136156 -223528197 - AluSp SINE Alu -19 294 65 979 319 72 12 chr1 19136156 19136295 -223528058 - L2 LINE L2 -312 3001 2872 428 309 22 0 chr1 19136771 19136907 -223527446 - MIR SINE MIR -34 228 90 1988 104 3 31 chr1 19136907 19137196 -223527157 + AluSq SINE Alu 1 281 -32 647 241 30 12 chr1 19137791 19137957 -223526396 - MER63A DNA MER1_type 0 210 42 195 114 0 0 chr1 19138110 19138145 -223526208 + (TA)n Simple_repeat Simple_repeat 2 36 0 244 259 0 25 chr1 19138152 19138233 -223526120 + MER116 DNA Mariner 1 79 -1 342 308 7 86 chr1 19138277 19138464 -223525889 + MIR3 SINE MIR 21 192 -32 220 240 124 33 chr1 19138880 19139001 -223525352 + MIR SINE MIR 23 154 -108 1608 177 3 20 chr1 19139001 19139295 -223525058 - AluJo SINE Alu -23 289 1 697 219 33 0 chr1 19139470 19139621 -223524732 + MIR SINE MIR 51 206 -56 1671 137 7 75 chr1 19139634 19139963 -223524390 + AluSx SINE Alu 1 308 0 946 226 24 32 chr1 19139971 19140219 -223524134 - MIR SINE MIR -12 250 5 2104 134 0 0 chr1 19140710 19141015 -223523338 + AluSx SINE Alu 1 305 -7 334 275 207 42 chr1 19141032 19141225 -223523128 + MIR SINE MIR 36 260 -2 239 298 106 10 chr1 19141994 19142098 -223522255 + MIR3 SINE MIR 9 122 -86 330 294 11 0 chr1 19142117 19142228 -223522125 + L2 LINE L2 3153 3308 -5 650 290 73 30 chr1 19142510 19142810 -223521543 - MER102b DNA MER1_type -3 338 26 223 400 27 0 chr1 19143239 19143389 -223520964 - MIR3 SINE MIR -9 199 46 237 293 198 0 chr1 19143812 19143918 -223520435 - MIR SINE MIR -79 183 57 699 293 43 12 chr1 19144272 19144525 -223519828 - L1ME3 LINE L1 0 6162 5902 1770 264 94 4 chr1 19144529 19145049 -223519304 + MLT1G1 LTR MaLR 1 567 -28 780 154 12 6 chr1 19145141 19145303 -223519050 + GA-rich Low_complexity Low_complexity 3 165 0 508 217 179 43 chr1 19145332 19145376 -223518977 - MLT1K LTR MaLR -66 522 485 2132 166 121 16 chr1 19145376 19145799 -223518554 - MLT1C LTR MaLR 0 467 1 508 217 179 43 chr1 19145799 19145938 -223518415 - MLT1K LTR MaLR -103 485 314 463 306 53 29 chr1 19146547 19146756 -223517597 - L2 LINE L2 -2 3311 3098 1917 144 17 3 chr1 19147074 19147372 -223516981 + AluJb SINE Alu 1 302 -10 389 234 0 54 chr1 19147409 19147520 -223516833 + L1ME3A LINE L1 6060 6164 -6 703 137 0 24 chr1 19147543 19147667 -223516686 + L1MA5A LINE L1 6177 6297 0 637 175 10 0 chr1 19147971 19148074 -223516279 + FLAM_A SINE Alu 4 107 -35 356 287 42 21 chr1 19148862 19149005 -223515348 + L2 LINE L2 3162 3307 -6 488 291 30 0 chr1 19149552 19149686 -223514667 - MIR SINE MIR -54 208 71 182 237 17 0 chr1 19149988 19150047 -223514306 + L2 LINE L2 2551 2610 -704 595 302 150 18 chr1 19150051 19150432 -223513921 + L2 LINE L2 2842 3272 0 531 291 51 7 chr1 19150850 19151050 -223513303 + MIR SINE MIR 31 241 -21 180 0 0 0 chr1 19151296 19151316 -223513037 + (A)n Simple_repeat Simple_repeat 1 20 0 1793 165 0 7 chr1 19151320 19151617 -223512736 + AluJo SINE Alu 1 295 -17 286 252 126 39 chr1 19152017 19152144 -223512209 - MIR3 SINE MIR -37 171 34 423 223 22 86 chr1 19152637 19152776 -223511577 + MLT1H LTR MaLR 81 210 -339 1822 153 3 20 chr1 19152785 19153086 -223511267 + AluJb SINE Alu 3 298 -14 294 241 0 0 chr1 19153133 19153220 -223511133 + (CACCAT)n Simple_repeat Simple_repeat 4 90 0 209 404 20 10 chr1 19153688 19153787 -223510566 + MIR SINE MIR 22 121 -141 1456 147 34 0 chr1 19154209 19154447 -223509906 + AluSx SINE Alu 58 303 -9 951 224 160 71 chr1 19154535 19155066 -223509287 - L2 LINE L2 -10 3303 2820 1779 159 24 14 chr1 19155066 19155355 -223508998 + AluJo SINE Alu 6 297 -15 2401 69 14 3 chr1 19155357 19155647 -223508706 + AluY SINE Alu 3 295 -16 951 224 160 71 chr1 19155647 19155819 -223508534 - L2 LINE L2 -493 2820 2665 2730 86 5 0 chr1 19155819 19156192 -223508161 - THE1C LTR MaLR 0 375 1 951 224 160 71 chr1 19156192 19156227 -223508126 - L2 LINE L2 -648 2665 2490 2167 147 0 0 chr1 19156277 19156612 -223507741 - AluJb SINE Alu 0 335 1 337 350 102 0 chr1 19157189 19157346 -223507007 - MIR SINE MIR -74 188 16 612 290 70 0 chr1 19157615 19157801 -223506552 - MIR SINE MIR -15 247 49 254 172 16 139 chr1 19158240 19158305 -223506048 + MER113 DNA MER1_type? 12 58 -463 2068 123 3 3 chr1 19158305 19158632 -223505721 - AluSx SINE Alu 0 327 1 254 172 16 139 chr1 19158632 19158687 -223505666 + MER113 DNA MER1_type? 58 118 -403 554 304 11 11 chr1 19159060 19159244 -223505109 - L2 LINE L2 -176 3096 2913 303 264 153 35 chr1 19159432 19159576 -223504777 - MIR SINE MIR -47 161 1 492 289 16 8 chr1 19159597 19159725 -223504628 + MIR3 SINE MIR 27 155 -53 513 248 45 46 chr1 19159752 19159924 -223504429 - MIR SINE MIR -62 146 18 969 182 12 24 chr1 19160991 19161196 -223503157 - MIR SINE MIR -14 248 46 336 348 43 14 chr1 19161168 19161309 -223503044 - MIR3 SINE MIR -17 191 47 * 2829 214 89 48 chr1 19161529 19161728 -223502625 + L1ME1 LINE L1 5318 5507 -659 2468 91 7 0 chr1 19161728 19162037 -223502316 + AluSx SINE Alu 1 311 -1 2829 214 89 48 chr1 19162037 19162585 -223501768 + L1ME1 LINE L1 5507 6103 -63 2286 131 0 3 chr1 19162585 19162898 -223501455 + AluSx SINE Alu 1 312 0 2829 214 89 48 chr1 19162898 19162960 -223501393 + L1ME1 LINE L1 6103 6161 -5 195 259 86 0 chr1 19163158 19163216 -223501137 - MIR3 SINE MIR -30 178 116 410 296 16 8 chr1 19163419 19163544 -223500809 + MIR SINE MIR 29 154 -108 465 327 16 28 chr1 19163560 19163811 -223500542 - MLT1L LTR MaLR -8 607 360 320 338 108 10 chr1 19164313 19164517 -223499836 - L1MC4a LINE L1 -1690 6118 5895 1172 301 63 12 chr1 19164522 19165030 -223499323 - L1MC4a LINE L1 -1979 5829 5296 2221 88 7 33 chr1 19165142 19165489 -223498864 - AluSx SINE Alu 0 312 1 1161 182 53 0 chr1 19165513 19165632 -223498721 + AluJo SINE Alu 1 137 -175 192 77 0 0 chr1 19165632 19165658 -223498695 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1161 182 53 0 chr1 19165658 19165747 -223498606 + AluJo SINE Alu 137 220 -92 430 336 91 5 chr1 19165796 19166171 -223498182 - L1MC4a LINE L1 -999 5147 4741 663 261 53 13 chr1 19166448 19166646 -223497707 - L1ME3A LINE L1 -11 6159 5949 393 45 0 286 chr1 19166646 19166758 -223497595 + MADE1 DNA Mariner 1 80 0 663 261 53 13 chr1 19166758 19166785 -223497568 - L1ME3A LINE L1 -221 5949 5925 * 6230 33 1 10 chr1 19166784 19167565 -223496788 - L1PA5 LINE L1 0 6154 5381 1385 93 0 271 chr1 19167642 19167900 -223496453 - AluJb SINE Alu -12 300 186 2243 87 28 3 chr1 19167900 19168189 -223496164 - AluY SINE Alu -15 296 1 1385 93 0 271 chr1 19168189 19168329 -223496024 - AluJb SINE Alu -126 186 10 670 264 24 0 chr1 19168341 19168508 -223495845 - L1ME3A LINE L1 -265 5905 5735 1800 178 0 7 chr1 19168561 19168854 -223495499 + AluJo SINE Alu 1 291 -21 530 286 19 0 chr1 19168885 19169039 -223495314 - L1ME3A LINE L1 -462 5700 5544 436 322 50 52 chr1 19169040 19169472 -223494881 + MLT1J1 LTR MaLR 16 450 0 259 295 93 20 chr1 19169656 19169958 -223494395 - L1M4 LINE L1 -3676 2470 2147 266 56 0 0 chr1 19170304 19170340 -223494013 + tRNA-Gln-CAG tRNA tRNA 3 38 -37 225 341 9 24 chr1 19170349 19170560 -223493793 - HAL1b LINE L1 -457 891 684 395 311 15 29 chr1 19170571 19170777 -223493576 - HAL1b LINE L1 -716 632 430 2194 83 0 4 chr1 19171443 19171719 -223492634 + AluY SINE Alu 36 310 -1 510 118 35 0 chr1 19171765 19171850 -223492503 - MER2 DNA MER2_type -139 206 119 696 167 0 0 chr1 19171852 19171960 -223492393 + AluSx SINE Alu 2 109 -204 1255 150 0 34 chr1 19172173 19172380 -223491973 + AluSx SINE Alu 108 307 -5 489 179 0 0 chr1 19172380 19172464 -223491889 - MER2 DNA MER2_type -213 132 49 355 347 114 0 chr1 19172495 19172688 -223491665 - L2 LINE L2 -178 3135 2921 2254 122 3 3 chr1 19172743 19173055 -223491298 + AluSx SINE Alu 1 312 0 1222 122 6 22 chr1 19173079 19173260 -223491093 + AluJb SINE Alu 118 295 -17 2065 138 6 31 chr1 19173260 19173610 -223490743 + AluSx SINE Alu 1 312 0 554 196 65 7 chr1 19173653 19173791 -223490562 - L2 LINE L2 -533 2781 2636 187 239 55 92 chr1 19174318 19174427 -223489926 - MIR SINE MIR -49 213 109 1724 166 40 3 chr1 19175139 19175435 -223488918 - AluJo SINE Alu -5 307 1 350 292 62 15 chr1 19175463 19175593 -223488760 + L2 LINE L2 3134 3269 -3 327 154 11 33 chr1 19176012 19176103 -223488250 + GA-rich Low_complexity Low_complexity 3 91 0 198 0 0 0 chr1 19176104 19176126 -223488227 + (A)n Simple_repeat Simple_repeat 1 22 0 190 282 0 28 chr1 19176399 19176470 -223487883 - MIR SINE MIR -82 126 58 21 0 0 0 chr1 19176666 19176687 -223487666 + AT_rich Low_complexity Low_complexity 1 21 0 443 309 40 7 chr1 19176761 19176913 -223487440 + MIR3 SINE MIR 29 185 -23 2398 86 3 0 chr1 19177081 19177383 -223486970 + AluSq SINE Alu 1 303 -10 322 333 25 0 chr1 19177411 19177531 -223486822 - MIR SINE MIR -74 188 66 380 116 128 0 chr1 19177829 19177915 -223486438 - MER53 DNA DNA -86 103 7 364 214 0 0 chr1 19178209 19178279 -223486074 + MIR SINE MIR 78 147 -61 400 306 22 0 chr1 19178689 19178823 -223485530 + L2 LINE L2 3136 3272 0 511 260 117 0 chr1 19178825 19178979 -223485374 - MIR SINE MIR -87 175 4 1105 113 11 8 chr1 19178993 19179345 -223485008 + (TGAA)n Simple_repeat Simple_repeat 3 354 0 342 299 88 7 chr1 19179623 19179770 -223484583 + MIR SINE MIR 40 198 -64 183 320 50 10 chr1 19180175 19180275 -223484078 + MIR SINE MIR 30 133 -75 469 253 70 38 chr1 19180526 19180684 -223483669 - MIR SINE MIR -68 194 32 320 227 53 0 chr1 19180890 19180965 -223483388 - MIR SINE MIR -115 147 69 1796 156 58 14 chr1 19180997 19181292 -223483061 - AluJb SINE Alu -4 308 1 287 280 27 0 chr1 19181746 19181821 -223482532 + L2 LINE L2 3234 3310 -3 266 301 12 12 chr1 19183970 19184053 -223480300 + MIR3 SINE MIR 107 189 -19 373 245 9 19 chr1 19184066 19184172 -223480181 - MIR SINE MIR -49 213 109 320 222 101 0 chr1 19184645 19184744 -223479609 - MER20 DNA MER1_type -82 137 29 404 306 82 0 chr1 19184798 19184932 -223479421 + MIR SINE MIR 12 156 -106 954 209 9 41 chr1 19185275 19185495 -223478858 + MER20 DNA MER1_type 6 218 -1 254 287 57 41 chr1 19185953 19186075 -223478278 - MIR SINE MIR -16 246 123 1409 219 52 21 chr1 19186278 19186404 -223477949 + L1MB5 LINE L1 5780 5901 -273 2273 118 0 0 chr1 19186404 19186700 -223477653 + AluSx SINE Alu 1 296 -16 1409 219 52 21 chr1 19186700 19186956 -223477397 + L1MB5 LINE L1 5901 6174 0 227 185 0 37 chr1 19186960 19186988 -223477365 + A-rich Low_complexity Low_complexity 1 28 -24 1593 134 0 119 chr1 19186988 19187120 -223477233 + AluJo SINE Alu 1 147 -155 1834 150 55 4 chr1 19187120 19187393 -223476960 + AluSx SINE Alu 1 287 -25 1593 134 0 119 chr1 19187393 19187603 -223476750 + AluJo SINE Alu 147 302 0 227 185 0 37 chr1 19187603 19187628 -223476725 + A-rich Low_complexity Low_complexity 28 52 0 1001 131 0 6 chr1 19187737 19187905 -223476448 + (GGAA)n Simple_repeat Simple_repeat 2 168 0 305 303 45 65 chr1 19188384 19188539 -223475814 + L1ME4a LINE L1 5759 5910 -211 1982 128 57 0 chr1 19189115 19189397 -223474956 + AluSx SINE Alu 1 298 -14 2174 115 0 11 chr1 19189399 19189706 -223474647 + AluSq SINE Alu 1 304 0 420 248 26 0 chr1 19189853 19189970 -223474383 - MIR SINE MIR -123 139 20 1920 114 85 0 chr1 19190106 19190409 -223473944 + AluSg SINE Alu 3 310 0 622 274 34 6 chr1 19190418 19190597 -223473756 - MIR SINE MIR -32 230 47 1873 156 30 7 chr1 19191452 19191747 -223472606 + AluJb SINE Alu 1 302 -10 451 274 48 20 chr1 19191990 19192136 -223472217 - MIR3 SINE MIR -29 179 30 942 133 5 109 chr1 19192519 19192581 -223471772 - MER5A DNA MER1_type -1 188 121 2049 151 0 0 chr1 19192581 19192880 -223471473 + AluJb SINE Alu 1 299 -13 942 133 5 109 chr1 19192880 19193027 -223471326 - MER5A DNA MER1_type -68 121 1 218 290 14 0 chr1 19193185 19193254 -223471099 + L2 LINE L2 3232 3301 -12 257 338 35 0 chr1 19193506 19193648 -223470705 - L1ME4a LINE L1 -31 6090 5944 2443 62 13 16 chr1 19193785 19194092 -223470261 + AluSp SINE Alu 1 306 -7 2020 148 0 7 chr1 19194101 19194411 -223469942 + AluJb SINE Alu 1 308 -4 2373 77 0 10 chr1 19194420 19194719 -223469634 + AluY SINE Alu 1 296 -15 816 269 8 26 chr1 19194729 19194963 -223469390 + MIR SINE MIR 29 258 -4 699 286 115 34 chr1 19195019 19195516 -223468837 - L1ME4a LINE L1 -318 5803 5267 471 325 102 15 chr1 19196069 19196296 -223468057 - MIR SINE MIR -15 247 1 239 298 91 16 chr1 19196296 19196401 -223467952 + MIR SINE MIR 52 165 -97 2122 132 10 0 chr1 19196791 19197087 -223467266 - AluSx SINE Alu -13 299 1 2123 153 0 0 chr1 19197291 19197599 -223466754 + AluSx SINE Alu 1 308 -4 1746 167 17 3 chr1 19197860 19198147 -223466206 + AluJb SINE Alu 1 291 -21 1702 196 81 37 chr1 19198160 19198644 -223465709 - MLT1D LTR MaLR 0 505 1 28 48 0 0 chr1 19198771 19198813 -223465540 + AT_rich Low_complexity Low_complexity 1 42 0 535 328 23 0 chr1 19198816 19198987 -223465366 + MIR SINE MIR 67 241 -21 1855 133 0 81 chr1 19199002 19199232 -223465121 - AluSq SINE Alu -17 296 98 2377 100 3 0 chr1 19199232 19199533 -223464820 - AluSx SINE Alu -10 302 1 1855 133 0 81 chr1 19199533 19199624 -223464729 - AluSq SINE Alu -215 98 1 219 36 0 0 chr1 19199716 19199744 -223464609 + (CA)n Simple_repeat Simple_repeat 1 28 0 263 289 33 11 chr1 19200482 19200572 -223463781 - L2 LINE L2 0 3272 3181 1123 158 0 0 chr1 19200648 19200825 -223463528 + AluSp SINE Alu 137 313 0 344 306 122 0 chr1 19200844 19201024 -223463329 + MIR SINE MIR 57 258 -4 267 230 200 20 chr1 19201453 19201553 -223462800 - L2 LINE L2 0 3313 3196 298 185 22 51 chr1 19202675 19202853 -223461500 + GA-rich Low_complexity Low_complexity 2 174 0 2186 123 0 3 chr1 19202883 19203184 -223461169 + AluSx SINE Alu 12 311 -1 356 274 11 11 chr1 19203192 19203371 -223460982 + GA-rich Low_complexity Low_complexity 2 180 0 209 183 17 0 chr1 19204706 19204766 -223459587 + GA-rich Low_complexity Low_complexity 1 61 0 252 266 32 11 chr1 19205699 19205793 -223458560 + (TA)n Simple_repeat Simple_repeat 2 97 0 279 0 0 0 chr1 19207356 19207387 -223456966 + (TCC)n Simple_repeat Simple_repeat 2 32 0 497 124 10 0 chr1 19212032 19212129 -223452224 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 276 30 0 0 chr1 19212357 19212390 -223451963 + (TG)n Simple_repeat Simple_repeat 2 34 0 214 293 0 0 chr1 19212830 19212888 -223451465 + GA-rich Low_complexity Low_complexity 2 59 0 200 196 65 0 chr1 19213300 19213346 -223451007 + G-rich Low_complexity Low_complexity 2 50 0 213 225 0 0 chr1 19214788 19214828 -223449525 + GA-rich Low_complexity Low_complexity 2 41 0 230 190 35 52 chr1 19217025 19217083 -223447270 + G-rich Low_complexity Low_complexity 3 59 0 22 35 0 0 chr1 19217378 19217407 -223446946 + GC_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr1 19218681 19218722 -223445631 + AT_rich Low_complexity Low_complexity 1 41 0 266 260 10 20 chr1 19219465 19219565 -223444788 + G-rich Low_complexity Low_complexity 1 99 0 283 310 35 53 chr1 19220854 19220967 -223443386 + MIR3 SINE MIR 52 162 -46 475 252 150 7 chr1 19221441 19221588 -223442765 - L2 LINE L2 -1 3312 3145 229 237 17 0 chr1 19221654 19221713 -223442640 + (TG)n Simple_repeat Simple_repeat 1 60 0 186 278 0 19 chr1 19222983 19223037 -223441316 + MIR SINE MIR 113 165 -97 183 42 0 0 chr1 19223425 19223449 -223440904 + (CGCGG)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr1 19223454 19223475 -223440878 + GC_rich Low_complexity Low_complexity 1 21 0 232 252 9 56 chr1 19223519 19223626 -223440727 + G-rich Low_complexity Low_complexity 1 102 0 214 372 36 15 chr1 19223859 19223996 -223440357 + MIR3 SINE MIR 67 206 -2 1974 160 0 3 chr1 19224882 19225195 -223439158 - AluJb SINE Alu 0 312 1 289 241 172 0 chr1 19225633 19225720 -223438633 - MIR3 SINE MIR -20 188 87 210 130 109 0 chr1 19225910 19225956 -223438397 - MIR SINE MIR -123 139 89 288 359 42 35 chr1 19226378 19226520 -223437833 + MIR3 SINE MIR 59 201 -7 183 272 97 39 chr1 19226856 19226959 -223437394 + MIR SINE MIR 19 127 -81 265 363 35 0 chr1 19227214 19227327 -223437026 - MIR3 SINE MIR -49 159 43 314 316 59 26 chr1 19227572 19227724 -223436629 + MIR3 SINE MIR 3 159 -49 228 213 0 0 chr1 19228348 19228395 -223435958 + C-rich Low_complexity Low_complexity 1 47 0 584 297 96 23 chr1 19228843 19229146 -223435207 - L2 LINE L2 -1 3312 2988 297 289 67 44 chr1 19229183 19229318 -223435035 - MIR SINE MIR -18 244 107 457 337 86 0 chr1 19229388 19229563 -223434790 - MIR SINE MIR -25 237 48 195 139 0 0 chr1 19229731 19229767 -223434586 + (T)n Simple_repeat Simple_repeat 1 36 0 458 282 40 0 chr1 19230253 19230377 -223433976 - MIR SINE MIR -114 148 20 559 193 40 47 chr1 19231303 19231453 -223432900 - MIR SINE MIR -68 194 46 378 57 0 0 chr1 19232323 19232376 -223431977 + (TG)n Simple_repeat Simple_repeat 1 53 0 451 273 65 26 chr1 19232571 19232725 -223431628 + MIR SINE MIR 103 262 0 2059 102 7 20 chr1 19232766 19233070 -223431283 + AluSx SINE Alu 3 302 -10 1916 137 13 3 chr1 19233265 19233565 -223430788 + AluJb SINE Alu 1 303 -9 277 222 0 16 chr1 19234751 19234814 -223429539 + C-rich Low_complexity Low_complexity 3 64 0 311 306 106 25 chr1 19234944 19235104 -223429249 - MIR SINE MIR -1 261 89 422 241 0 37 chr1 19235491 19235678 -223428675 + (TG)n Simple_repeat Simple_repeat 1 180 0 212 287 35 91 chr1 19235705 19235848 -223428505 + L2 LINE L2 3163 3297 -16 485 221 10 0 chr1 19236260 19236364 -223427989 - MER81 DNA DNA -9 105 1 301 320 10 10 chr1 19236722 19236822 -223427531 + MIR SINE MIR 18 117 -145 278 297 54 18 chr1 19237430 19237541 -223426812 + MIR SINE MIR 98 212 -50 393 285 204 16 chr1 19238040 19238226 -223426127 + MIR SINE MIR 23 243 -19 224 337 20 50 chr1 19238765 19238866 -223425487 + MIR SINE MIR 68 165 -97 294 29 0 0 chr1 19238969 19239004 -223425349 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 1999 144 3 10 chr1 19239113 19239425 -223424928 - AluSx SINE Alu -2 310 1 469 313 44 62 chr1 19239431 19239703 -223424650 - L1ME4a LINE L1 -6 6115 5849 351 277 2 126 chr1 19239815 19239924 -223424429 - MIR SINE MIR -62 146 73 1960 138 3 0 chr1 19239924 19240234 -223424119 - AluSx SINE Alu 0 311 1 351 277 2 126 chr1 19240234 19240274 -223424079 - MIR SINE MIR -135 73 30 592 204 99 14 chr1 19240675 19240817 -223423536 - MIR3 SINE MIR -4 204 51 348 250 37 98 chr1 19241076 19241240 -223423113 - MIR SINE MIR -51 211 58 * 383 183 10 87 chr1 19241215 19241319 -223423034 - MIR3 SINE MIR -9 199 104 595 276 162 18 chr1 19241500 19241728 -223422625 + MIR SINE MIR 2 262 0 2301 101 3 0 chr1 19241917 19242225 -223422128 - AluSc SINE Alu 0 309 1 1980 137 3 7 chr1 19242225 19242524 -223421829 - AluSx SINE Alu -14 298 1 715 187 41 0 chr1 19242579 19242702 -223421651 + FLAM_C SINE Alu 1 128 -5 181 357 18 27 chr1 19243569 19243681 -223420672 - L3b LINE CR1 -155 1428 1318 389 211 128 28 chr1 19243702 19243811 -223420542 + MIR SINE MIR 51 170 -92 760 48 19 0 chr1 19243900 19244005 -223420348 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 789 188 55 12 chr1 19244593 19244758 -223419595 + MER5B DNA MER1_type 1 172 -6 318 362 64 7 chr1 19244816 19244957 -223419396 + MIR SINE MIR 109 257 -5 1740 173 0 10 chr1 19244971 19245260 -223419093 + AluJb SINE Alu 1 286 -26 578 254 14 0 chr1 19246003 19246141 -223418212 + MIR3 SINE MIR 49 188 -20 492 259 81 51 chr1 19246233 19246396 -223417957 + MIR SINE MIR 39 210 -52 2062 77 4 0 chr1 19246396 19246657 -223417696 + AluSg SINE Alu 41 302 -8 492 259 81 51 chr1 19246657 19246690 -223417663 + MIR SINE MIR 210 241 -21 200 374 157 0 chr1 19246720 19246803 -223417550 + MIR SINE MIR 107 202 -60 293 283 107 78 chr1 19248159 19248254 -223416099 + MIR SINE MIR 46 137 -125 1564 166 57 33 chr1 19248254 19248555 -223415798 + AluJo SINE Alu 1 308 -4 293 283 107 78 chr1 19248555 19248664 -223415689 + MIR SINE MIR 137 256 -6 2052 114 10 16 chr1 19249149 19249456 -223414897 - AluSx SINE Alu -7 305 1 488 330 93 8 chr1 19249628 19249864 -223414489 + MIR SINE MIR 7 262 0 547 252 0 0 chr1 19250674 19250785 -223413568 - L2 LINE L2 -1 3312 3202 536 189 195 38 chr1 19251373 19251532 -223412821 + MER5A DNA MER1_type 1 184 -5 384 248 73 51 chr1 19251902 19252039 -223412314 - MIR3 SINE MIR 0 208 69 183 369 15 0 chr1 19252056 19252121 -223412232 - L2 LINE L2 -31 3282 3217 285 151 0 0 chr1 19253043 19253096 -223411257 + G-rich Low_complexity Low_complexity 1 53 0 192 287 46 58 chr1 19253329 19253416 -223410937 - L2 LINE L2 -11 3261 3176 2223 116 0 0 chr1 19254354 19254664 -223409689 + AluSg SINE Alu 1 310 0 2057 105 45 0 chr1 19254682 19254968 -223409385 + AluSp SINE Alu 1 299 -14 454 230 206 6 chr1 19255453 19255618 -223408735 + MIR SINE MIR 15 212 -50 180 125 0 0 chr1 19256336 19256368 -223407985 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 242 209 0 81 chr1 19256376 19256462 -223407891 - L2 LINE L2 -1 3271 3193 703 181 102 14 chr1 19256509 19256697 -223407656 - MIR SINE MIR 0 262 59 200 260 11 97 chr1 19256762 19256889 -223407464 - MIR SINE MIR -71 137 59 280 315 75 27 chr1 19257053 19257199 -223407154 - MIR SINE MIR -55 155 1 2288 72 13 31 chr1 19257428 19257746 -223406607 + AluSp SINE Alu 1 312 -1 1849 118 52 0 chr1 19258244 19258590 -223405763 - AluSq SINE Alu 0 360 1 183 336 48 10 chr1 19259118 19259222 -223405131 + MIR SINE MIR 28 135 -127 244 184 61 0 chr1 19259975 19260024 -223404329 - L2 LINE L2 0 3313 3262 1902 147 7 0 chr1 19260110 19260410 -223403943 + AluSx SINE Alu 1 302 -10 387 356 75 16 chr1 19261906 19262248 -223402105 - L2 LINE L2 -1 3312 2866 363 44 0 0 chr1 19262451 19262496 -223401857 + (CACCAT)n Simple_repeat Simple_repeat 3 47 0 2073 122 0 0 chr1 19263427 19263743 -223400610 - AluSx SINE Alu 0 316 1 461 257 31 32 chr1 19263752 19263911 -223400442 - MIR SINE MIR -62 146 44 338 269 56 9 chr1 19263995 19264103 -223400250 + MIR SINE MIR 57 169 -93 762 253 72 16 chr1 19264613 19264917 -223399436 + MER113 DNA MER1_type? 11 331 -190 966 233 30 0 chr1 19264928 19265130 -223399223 - MER3 DNA MER1_type -1 208 1 2039 126 0 40 chr1 19265171 19265496 -223398857 + AluSx SINE Alu 1 312 0 263 295 42 21 chr1 19265517 19265612 -223398741 + L2 LINE L2 3133 3229 -43 198 268 0 0 chr1 19266330 19266386 -223397967 + L2 LINE L2 2928 2983 -289 232 303 128 28 chr1 19266644 19266753 -223397600 + L2 LINE L2 3153 3272 0 288 299 0 13 chr1 19266793 19266870 -223397483 + GA-rich Low_complexity Low_complexity 2 77 0 542 276 16 0 chr1 19267387 19267514 -223396839 - MIR3 SINE MIR -40 168 40 1689 176 7 3 chr1 19267537 19267821 -223396532 - AluJo SINE Alu -17 295 11 313 247 0 41 chr1 19267852 19267949 -223396404 - L1ME1 LINE L1 -6 6160 6068 227 337 0 0 chr1 19268077 19268160 -223396193 - L1ME1 LINE L1 -2037 5771 5689 254 278 0 9 chr1 19268713 19268812 -223395541 + GA-rich Low_complexity Low_complexity 2 101 -14 2225 109 0 0 chr1 19268812 19269116 -223395237 + AluSx SINE Alu 1 304 -8 254 278 0 9 chr1 19269116 19269131 -223395222 + GA-rich Low_complexity Low_complexity 101 115 0 253 404 40 15 chr1 19269798 19269996 -223394357 - MIR SINE MIR 0 262 60 2103 90 11 0 chr1 19270737 19271078 -223393275 + AluSp SINE Alu 6 349 0 387 288 144 13 chr1 19271202 19271355 -223392998 + MIR3 SINE MIR 20 192 -16 272 312 0 13 chr1 19271372 19271449 -223392904 + L3 LINE CR1 1413 1488 -89 232 299 217 37 chr1 19271611 19271828 -223392525 + MIR SINE MIR 7 262 0 421 277 189 0 chr1 19271887 19272035 -223392318 - L2 LINE L2 -3 3310 3135 2319 97 7 3 chr1 19272609 19272919 -223391434 - AluSq SINE Alu -2 311 1 579 272 47 87 chr1 19272919 19273087 -223391266 - MIR SINE MIR -14 248 92 3587 94 17 13 chr1 19273087 19273608 -223390745 + L1MA3 LINE L1 5782 6304 -1 579 272 47 87 chr1 19273608 19273693 -223390660 - MIR SINE MIR -170 92 5 192 361 31 0 chr1 19273855 19273952 -223390401 + MIR3 SINE MIR 91 190 -18 607 240 157 5 chr1 19273978 19274182 -223390171 - MIR SINE MIR -25 237 3 290 297 82 69 chr1 19274274 19274506 -223389847 + L2 LINE L2 3024 3258 -14 234 176 0 0 chr1 19274530 19274581 -223389772 + GA-rich Low_complexity Low_complexity 2 52 0 494 278 96 33 chr1 19274777 19274825 -223389528 + MER113 DNA MER1_type? 161 205 -316 293 0 0 26 chr1 19274825 19274863 -223389490 + (CA)n Simple_repeat Simple_repeat 2 38 0 494 278 96 33 chr1 19274863 19275084 -223389269 + MER113 DNA MER1_type? 205 447 -74 236 77 26 0 chr1 19275642 19275681 -223388672 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 341 208 160 0 chr1 19275909 19276015 -223388338 - L2 LINE L2 -237 3035 2913 571 226 24 71 chr1 19276095 19276117 -223388236 + MIR SINE MIR 28 49 -213 2406 51 3 3 chr1 19276117 19276413 -223387940 - AluY SINE Alu -15 296 1 571 226 24 71 chr1 19276413 19276558 -223387795 + MIR SINE MIR 49 187 -75 360 0 0 0 chr1 19276630 19276670 -223387683 + (TG)n Simple_repeat Simple_repeat 2 41 0 544 264 104 21 chr1 19276857 19277062 -223387291 + MIR SINE MIR 7 223 -39 194 331 8 79 chr1 19277566 19277693 -223386660 + MER5A DNA MER1_type 41 158 -31 * 332 272 37 7 chr1 19277593 19277727 -223386626 - MER5A DNA MER1_type -41 137 9 495 230 0 0 chr1 19277861 19278026 -223386327 + (TG)n Simple_repeat Simple_repeat 2 166 0 2150 89 3 35 chr1 19278603 19278918 -223385435 + AluSx SINE Alu 1 305 -7 436 314 64 19 chr1 19279093 19279249 -223385104 + MIR SINE MIR 6 168 -94 258 175 0 0 chr1 19279355 19279395 -223384958 - MIR SINE MIR -6 256 217 370 317 75 30 chr1 19280460 19280659 -223383694 + MIR SINE MIR 49 256 -6 806 176 59 59 chr1 19280741 19280891 -223383462 + MER58A DNA MER1_type 5 157 -2263 2173 132 3 0 chr1 19280891 19281201 -223383152 + AluSx SINE Alu 1 311 -1 806 176 59 59 chr1 19281201 19281254 -223383099 + MER58A DNA MER1_type 156 208 -16 662 299 31 21 chr1 19281368 19281562 -223382791 + MIR SINE MIR 59 254 -8 2029 114 0 63 chr1 19283003 19283335 -223381018 - AluSx SINE Alu -1 311 1 493 230 86 20 chr1 19283622 19283774 -223380579 - L2 LINE L2 -2 3311 3150 188 372 13 0 chr1 19283812 19283890 -223380463 - MIR SINE MIR 0 262 184 181 260 140 0 chr1 19283887 19283937 -223380416 - MIR SINE MIR -186 76 20 * 2291 107 0 16 chr1 19283960 19284277 -223380076 - AluSx SINE Alu 0 312 1 1801 149 4 0 chr1 19284830 19285111 -223379242 + AluJb SINE Alu 5 286 -26 229 265 20 0 chr1 19285323 19285372 -223378981 - L2 LINE L2 -86 3186 3137 189 248 19 124 chr1 19285696 19285801 -223378552 - MIR SINE MIR -74 134 41 191 111 0 0 chr1 19286182 19286212 -223378141 - MIR SINE MIR -110 152 124 249 292 0 0 chr1 19286237 19286302 -223378051 - L2 LINE L2 0 3272 3208 212 250 188 0 chr1 19286298 19286362 -223377991 - MIR SINE MIR -182 80 5 * 462 310 185 0 chr1 19286636 19286820 -223377533 - MIR SINE MIR -12 250 33 674 205 95 35 chr1 19287708 19287908 -223376445 + MIR SINE MIR 40 251 -11 2072 126 0 0 chr1 19289352 19289645 -223374708 + AluSx SINE Alu 1 293 -19 612 308 27 7 chr1 19290437 19290481 -223373872 + MIR SINE MIR 16 58 -204 2088 103 14 7 chr1 19290481 19290804 -223373549 + AluSx SINE Alu 1 312 0 612 308 27 7 chr1 19290804 19290993 -223373360 + MIR SINE MIR 58 252 -10 450 347 35 6 chr1 19291080 19291253 -223373100 + MIR3 SINE MIR 27 204 -4 299 253 62 84 chr1 19291666 19291844 -223372509 + L2 LINE L2 2914 3087 -185 556 303 6 22 chr1 19291931 19292109 -223372244 - MIR SINE MIR 0 262 88 648 322 75 5 chr1 19292125 19292339 -223372014 + MIR SINE MIR 2 230 -32 230 321 110 0 chr1 19292353 19292462 -223371891 - MIR SINE MIR -68 140 20 207 263 0 92 chr1 19293288 19293440 -223370913 + C-rich Low_complexity Low_complexity 4 141 0 204 40 0 0 chr1 19293589 19293614 -223370739 + (CCG)n Simple_repeat Simple_repeat 3 27 0 381 284 149 55 chr1 19293984 19294273 -223370080 + L2 LINE L2 2937 3252 -20 185 309 182 9 chr1 19294300 19294410 -223369943 - L2 LINE L2 -25 3288 3160 286 333 90 40 chr1 19294731 19294908 -223369445 + L3 LINE CR1 1347 1532 -45 261 311 66 25 chr1 19294927 19295049 -223369304 - MER5A DNA MER1_type -41 148 22 2229 81 7 3 chr1 19295196 19295492 -223368861 - AluSg SINE Alu -13 297 1 193 303 45 0 chr1 19295565 19295631 -223368722 - MIR3 SINE MIR -17 191 123 198 233 33 50 chr1 19296686 19296746 -223367607 + MER5A DNA MER1_type 130 188 -1 198 71 0 0 chr1 19297269 19297297 -223367056 + (GA)n Simple_repeat Simple_repeat 1 28 0 796 238 5 26 chr1 19298517 19298710 -223365643 + MIR SINE MIR 74 262 0 219 355 50 16 chr1 19299519 19299640 -223364713 - L2 LINE L2 -45 3227 3103 334 336 16 0 chr1 19301198 19301320 -223363033 + MIR SINE MIR 20 143 -119 244 270 0 0 chr1 19301366 19301429 -223362924 - HsTC2 DNA Tc2 -609 1289 1227 201 74 0 0 chr1 19301623 19301650 -223362703 - MIR SINE MIR -119 143 117 205 298 0 0 chr1 19301952 19301999 -223362354 + C-rich Low_complexity Low_complexity 1 47 0 351 167 0 0 chr1 19302532 19302598 -223361755 + (TG)n Simple_repeat Simple_repeat 2 67 0 327 25 0 0 chr1 19302692 19302732 -223361621 + (TG)n Simple_repeat Simple_repeat 2 41 0 258 196 20 0 chr1 19302975 19303026 -223361327 - L2 LINE L2 0 3313 3262 182 393 22 15 chr1 19303214 19303349 -223361004 - L3b LINE CR1 -150 1433 1298 420 271 28 11 chr1 19303642 19303819 -223360534 + (CA)n Simple_repeat Simple_repeat 1 180 0 357 24 0 0 chr1 19303921 19303963 -223360390 + (CA)n Simple_repeat Simple_repeat 1 42 0 383 296 115 35 chr1 19304045 19304222 -223360131 + MIR SINE MIR 25 211 -51 207 264 0 23 chr1 19304867 19304954 -223359399 + (TG)n Simple_repeat Simple_repeat 2 86 0 324 176 11 77 chr1 19305070 19305131 -223359222 - MER5B DNA MER1_type -1 177 122 2201 88 3 16 chr1 19305131 19305436 -223358917 + AluSp SINE Alu 1 301 -12 324 176 11 77 chr1 19305436 19305465 -223358888 - MER5B DNA MER1_type -56 122 93 216 239 0 0 chr1 19305448 19305494 -223358859 + MER5B DNA MER1_type 133 178 0 * 231 266 22 11 chr1 19305920 19306028 -223358325 + MIR SINE MIR 96 205 -57 655 220 65 27 chr1 19306644 19306830 -223357523 - MIR SINE MIR -4 258 66 248 238 12 48 chr1 19307434 19307518 -223356835 + G-rich Low_complexity Low_complexity 2 82 0 560 270 75 23 chr1 19307941 19308115 -223356238 + MIR SINE MIR 20 202 -60 869 237 197 15 chr1 19308586 19308911 -223355442 + L2 LINE L2 2926 3309 -4 347 303 25 17 chr1 19308914 19309033 -223355320 - L2 LINE L2 -3 3269 3150 200 203 51 17 chr1 19309029 19309088 -223355265 + L2 LINE L2 3249 3309 -4 * 245 240 32 96 chr1 19310411 19310536 -223353817 + MIR SINE MIR 80 196 -66 189 250 78 0 chr1 19311144 19311208 -223353145 + L2 LINE L2 3021 3089 -183 252 100 0 0 chr1 19311833 19311873 -223352480 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 239 333 140 0 chr1 19312540 19312633 -223351720 - MIR SINE MIR -65 143 38 1413 185 32 42 chr1 19312657 19312735 -223351618 - Charlie5 DNA MER1_type -8 2616 2539 2329 117 0 0 chr1 19312735 19313035 -223351318 + AluSx SINE Alu 1 300 -12 1413 185 32 42 chr1 19313035 19313334 -223351019 - Charlie5 DNA MER1_type -85 2539 2243 606 213 8 8 chr1 19313349 19313476 -223350877 - MER3 DNA MER1_type -82 127 48 243 365 0 0 chr1 19314000 19314104 -223350249 + (TG)n Simple_repeat Simple_repeat 1 104 0 204 380 23 12 chr1 19314159 19314330 -223350023 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 285 235 0 51 chr1 19314388 19314486 -223349867 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 294 290 5 10 chr1 19314515 19314725 -223349628 + (TG)n Simple_repeat Simple_repeat 1 208 0 278 316 0 10 chr1 19315081 19315179 -223349174 + CT-rich Low_complexity Low_complexity 2 98 0 256 246 18 0 chr1 19315359 19315416 -223348937 + MIR3 SINE MIR 102 159 -49 294 276 133 0 chr1 19315709 19315807 -223348546 - MIR SINE MIR -62 146 36 186 256 0 0 chr1 19316010 19316049 -223348304 - L2 LINE L2 -12 3301 3263 * 311 255 88 0 chr1 19316045 19316147 -223348206 - MIR SINE MIR -72 190 80 369 286 87 32 chr1 19316987 19317172 -223347181 + MIR SINE MIR 68 262 0 3819 103 37 35 chr1 19317199 19317719 -223346634 + L1MA4A LINE L1 5643 6166 -137 2323 122 0 3 chr1 19317719 19318031 -223346322 + AluSx SINE Alu 1 311 -1 3819 103 37 35 chr1 19318031 19318159 -223346194 + L1MA4A LINE L1 6166 6292 -11 834 272 19 3 chr1 19318429 19318658 -223345695 + MIR SINE MIR 31 256 -6 2538 75 3 0 chr1 19318698 19319006 -223345347 - AluY SINE Alu 0 311 3 367 265 36 36 chr1 19319428 19319566 -223344787 - MIR SINE MIR -61 147 52 625 288 24 19 chr1 19319653 19319858 -223344495 - MIR SINE MIR -6 256 51 981 108 12 6 chr1 19320967 19321297 -223343056 + (TGGA)n Simple_repeat Simple_repeat 1 332 0 181 295 39 39 chr1 19323560 19323638 -223340715 - L3b LINE CR1 -135 1448 1371 23 33 0 0 chr1 19324348 19324378 -223339975 + AT_rich Low_complexity Low_complexity 1 30 0 221 212 30 0 chr1 19325205 19325271 -223339082 + (TG)n Simple_repeat Simple_repeat 2 69 0 299 327 10 10 chr1 19325520 19325621 -223338732 + L2 LINE L2 3169 3269 -3 944 146 21 0 chr1 19325839 19325983 -223338370 - FAM SINE Alu -15 170 24 997 194 44 9 chr1 19326010 19326237 -223338116 - LTR16A1 LTR ERVL -55 402 168 523 280 21 0 chr1 19326298 19326441 -223337912 - LTR16A1 LTR ERVL -311 146 1 293 290 80 14 chr1 19326844 19326982 -223337371 + MIR3 SINE MIR 38 184 -24 276 221 38 76 chr1 19327209 19327340 -223337013 - MLT1L LTR MaLR -385 126 1 209 187 69 0 chr1 19327817 19327882 -223336471 + MIR SINE MIR 75 112 -96 748 237 45 15 chr1 19327909 19328215 -223336138 - MLT1I LTR MaLR -29 380 38 249 264 150 36 chr1 19328395 19328562 -223335791 - MIR SINE MIR -12 250 65 389 341 63 10 chr1 19328884 19329089 -223335264 - MIR SINE MIR -45 217 2 457 219 0 44 chr1 19329174 19329288 -223335065 - MLT1H LTR MaLR -13 536 428 1555 259 56 52 chr1 19329288 19329879 -223334474 + MLT1E LTR MaLR 1 593 0 294 200 0 43 chr1 19330050 19330120 -223334233 - MLT1H LTR MaLR -396 153 87 595 228 60 27 chr1 19330658 19330842 -223333511 + MIR SINE MIR 18 207 -55 1166 220 152 28 chr1 19331439 19332038 -223332315 - L1MDb LINE L1 -3900 2640 1968 1419 187 15 18 chr1 19332045 19332318 -223332035 + MSTB LTR MaLR 155 426 0 258 294 0 0 chr1 19332498 19332583 -223331770 + MLT1I LTR MaLR 323 407 -2 623 152 19 0 chr1 19332659 19332764 -223331589 + L1MC1 LINE L1 6056 6162 -171 2494 140 29 14 chr1 19332764 19333179 -223331174 + MSTA LTR MaLR 1 421 -7 820 201 5 11 chr1 19333179 19333363 -223330990 + L1MC1 LINE L1 6151 6333 0 2159 72 19 0 chr1 19333364 19333627 -223330726 + AluY SINE Alu 36 303 -8 450 252 68 38 chr1 19333631 19333897 -223330456 - HAL1b LINE L1 -404 944 671 1122 220 51 57 chr1 19333916 19334407 -223329946 - L1M3b LINE L1 -4520 1951 1506 861 268 38 90 chr1 19334402 19334903 -223329450 - L1MDb LINE L1 -5160 1383 909 * 332 308 135 24 chr1 19334959 19335167 -223329186 - L1MDb LINE L1 -5598 932 702 2058 133 7 0 chr1 19335488 19335774 -223328579 + AluSx SINE Alu 1 288 -24 509 80 13 0 chr1 19335774 19335849 -223328504 + (GGA)n Simple_repeat Simple_repeat 1 76 0 2205 110 0 3 chr1 19336060 19336352 -223328001 - AluSg SINE Alu -12 298 8 2010 91 0 4 chr1 19336359 19336611 -223327742 - AluSg SINE Alu -10 300 50 435 253 58 58 chr1 19336963 19337075 -223327278 + MER5B DNA MER1_type 1 115 -63 1543 145 65 36 chr1 19337075 19337351 -223327002 - AluJb SINE Alu -25 287 4 435 253 58 58 chr1 19337351 19337412 -223326941 + MER5B DNA MER1_type 114 174 -4 1222 228 75 19 chr1 19338303 19338663 -223325690 - MER77 LTR ERV1 -11 594 215 354 271 0 0 chr1 19338680 19338765 -223325588 - MLT1I LTR MaLR -2 407 323 328 287 9 32 chr1 19338845 19338962 -223325391 - MLT1J LTR MaLR -231 199 73 453 332 73 0 chr1 19339637 19339842 -223324511 - MIR SINE MIR -25 237 18 475 245 44 25 chr1 19339879 19340038 -223324315 - L1MC5 LINE L1 -97 7864 7703 363 314 54 22 chr1 19340187 19340372 -223323981 + MIR SINE MIR 12 202 -60 680 254 42 0 chr1 19340413 19340578 -223323775 + MIR SINE MIR 74 245 -17 1167 152 18 42 chr1 19340723 19340940 -223323413 + MER20 DNA MER1_type 8 219 0 253 313 21 10 chr1 19341363 19341459 -223322894 + MIR SINE MIR 25 121 -141 192 158 0 0 chr1 19341548 19341586 -223322767 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 972 299 154 28 chr1 19341597 19342300 -223322053 - L2 LINE L2 -462 2852 2062 260 313 10 0 chr1 19342608 19342704 -223321649 + MIR SINE MIR 59 155 -107 392 280 48 8 chr1 19342972 19343048 -223321305 + MER5B DNA MER1_type 49 133 -45 333 68 0 0 chr1 19343048 19343092 -223321261 + (CAT)n Simple_repeat Simple_repeat 2 45 0 392 280 48 8 chr1 19343092 19343140 -223321213 + MER5B DNA MER1_type 133 178 0 341 294 15 22 chr1 19343402 19343538 -223320815 - MIR SINE MIR -50 212 78 197 196 71 0 chr1 19343610 19343666 -223320687 + L2 LINE L2 3213 3272 0 575 242 78 7 chr1 19344176 19344329 -223320024 - MER58B DNA MER1_type 0 341 178 2046 85 15 8 chr1 19344334 19344593 -223319760 - AluSx SINE Alu -51 261 1 274 314 48 24 chr1 19344986 19345110 -223319243 + MIR SINE MIR 20 146 -62 2487 137 23 30 chr1 19345214 19345598 -223318755 + MSTA LTR MaLR 1 383 -45 1948 162 0 3 chr1 19345598 19345894 -223318459 - AluSx SINE Alu -17 295 1 2487 137 23 30 chr1 19345894 19345939 -223318414 + MSTA LTR MaLR 383 427 -1 216 316 44 26 chr1 19346439 19346553 -223317800 + MIR SINE MIR 106 221 -41 184 197 0 106 chr1 19347374 19347440 -223316913 + MIR SINE MIR 78 136 -72 407 237 32 0 chr1 19347541 19347634 -223316719 + MIR SINE MIR 90 185 -77 337 272 136 0 chr1 19347786 19347889 -223316464 + MIR SINE MIR 30 146 -62 238 338 123 46 chr1 19348593 19348960 -223315393 - L2 LINE L2 -5 3267 2873 566 279 73 0 chr1 19349061 19349226 -223315127 - MIR SINE MIR -34 228 52 372 22 0 0 chr1 19349230 19349275 -223315078 + (TG)n Simple_repeat Simple_repeat 2 46 0 2243 123 0 0 chr1 19349276 19349577 -223314776 - AluSx SINE Alu -11 301 1 696 220 57 6 chr1 19349855 19350032 -223314321 - MER5A DNA MER1_type -3 186 1 190 250 100 0 chr1 19350106 19350166 -223314187 - MIR SINE MIR -102 160 95 463 284 130 25 chr1 19350229 19350584 -223313769 + L2 LINE L2 2921 3312 -1 327 306 83 23 chr1 19351009 19351225 -223313128 - L1MC4a LINE L1 -1777 6031 5803 298 341 81 0 chr1 19351309 19351514 -223312839 + MIR SINE MIR 34 256 -6 315 331 59 49 chr1 19352064 19352369 -223311984 - L1ME4a LINE L1 -221 5900 5593 629 241 74 5 chr1 19352944 19353166 -223311187 + MIR SINE MIR 10 248 -14 231 278 0 28 chr1 19353859 19353931 -223310422 + C-rich Low_complexity Low_complexity 5 74 0 404 310 47 18 chr1 19355122 19355293 -223309060 + MIR SINE MIR 12 187 -75 810 236 65 8 chr1 19355570 19355811 -223308542 - MIR SINE MIR -1 261 5 229 361 38 44 chr1 19356073 19356231 -223308122 + MIR3 SINE MIR 9 165 -43 195 42 0 0 chr1 19556313 19556337 -223108016 + (G)n Simple_repeat Simple_repeat 1 24 0 1328 53 0 25 chr1 19556494 19557028 -223107325 + (TCCA)n Simple_repeat Simple_repeat 1 520 0 202 338 54 0 chr1 19557032 19557106 -223107247 - L2 LINE L2 -4 3309 3232 270 162 126 18 chr1 19558117 19558202 -223106151 + MIR SINE MIR 21 106 -102 198 329 14 0 chr1 19559007 19559077 -223105276 + MER5A DNA MER1_type 119 189 0 * 519 244 16 19 chr1 19559077 19559218 -223105135 + MIR SINE MIR 31 173 -41 229 281 135 0 chr1 19559331 19559427 -223104926 + MIR SINE MIR 33 141 -67 434 317 217 7 chr1 19559822 19560122 -223104231 - L2 LINE L2 -1 3312 2950 353 248 117 29 chr1 19560284 19560421 -223103932 + MIR SINE MIR 58 206 -56 243 213 40 40 chr1 19560774 19560849 -223103504 + MIR SINE MIR 80 154 -108 1094 127 33 6 chr1 19560851 19561032 -223103321 + LTR23 LTR ERV1 4 189 -248 1967 137 0 20 chr1 19561441 19561747 -223102606 - AluSx SINE Alu -12 300 1 2302 50 7 7 chr1 19562151 19562482 -223101871 + AluY SINE Alu 1 311 0 253 270 125 46 chr1 19563196 19563348 -223101005 + MIR3 SINE MIR 20 183 -25 272 176 20 0 chr1 19563361 19563412 -223100941 - MER81 DNA DNA -62 52 1 469 307 55 78 chr1 19563449 19563667 -223100686 + MIR SINE MIR 39 251 -11 386 313 39 12 chr1 19563689 19563896 -223100457 + MIR SINE MIR 34 250 -12 2180 99 0 0 chr1 19564443 19564774 -223099579 + AluSx SINE Alu 1 331 0 259 235 37 37 chr1 19565040 19565121 -223099232 + MIR SINE MIR 93 173 -89 394 285 109 18 chr1 19565215 19565380 -223098973 - MIR SINE MIR -78 184 5 342 115 0 0 chr1 19566042 19566094 -223098259 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 222 247 290 0 chr1 19566168 19566261 -223098092 - L2 LINE L2 -1 3271 3152 905 115 0 8 chr1 19566384 19566514 -223097839 + FLAM_C SINE Alu 1 129 -14 2042 122 43 9 chr1 19566514 19566843 -223097510 - THE1C LTR MaLR -35 340 1 210 333 50 50 chr1 19567107 19567248 -223097105 - MIR SINE MIR -74 188 48 251 314 73 16 chr1 19567301 19567425 -223096928 - L2 LINE L2 -20 3293 3163 216 0 0 0 chr1 19570203 19570227 -223094126 + (CCTG)n Simple_repeat Simple_repeat 2 25 0 288 0 0 0 chr1 19570562 19570594 -223093759 + (CA)n Simple_repeat Simple_repeat 2 33 0 370 256 35 0 chr1 19572610 19572696 -223091657 - MIR SINE MIR -82 180 92 1355 204 20 0 chr1 19573936 19574230 -223090123 - AluSq SINE Alu -13 300 1 723 242 112 0 chr1 19574322 19574545 -223089808 + MER90 LTR ERV1 328 575 0 282 304 152 8 chr1 19574743 19574868 -223089485 - MIR SINE MIR -106 156 14 2020 111 0 26 chr1 19575411 19575717 -223088636 - AluSx SINE Alu -14 298 1 430 254 124 37 chr1 19576215 19576432 -223087921 + MER102b DNA MER1_type 75 310 -31 312 277 28 37 chr1 19577670 19577791 -223086562 + MIR3 SINE MIR 45 164 -44 499 286 132 5 chr1 19578365 19578585 -223085768 + MIR SINE MIR 9 256 -6 219 163 0 61 chr1 19578740 19578789 -223085564 + MIR SINE MIR 205 250 -12 409 186 39 49 chr1 19578828 19578930 -223085423 + MIR SINE MIR 62 162 -100 211 315 111 31 chr1 19579677 19579839 -223084514 + MIR3 SINE MIR 1 175 -33 235 261 54 45 chr1 19579984 19580095 -223084258 + MIR SINE MIR 59 170 -92 306 273 13 0 chr1 19580412 19580489 -223083864 - MER116 DNA Mariner 0 80 3 222 118 0 0 chr1 19582270 19582304 -223082049 + (TTC)n Simple_repeat Simple_repeat 3 36 0 684 225 9 99 chr1 19582397 19582619 -223081734 - MER20 DNA MER1_type -17 202 1 367 276 181 0 chr1 19582888 19583098 -223081255 - L1ME4a LINE L1 -1 6120 5873 309 279 58 0 chr1 19583103 19583189 -223081164 + L2 LINE L2 3222 3312 -1 399 273 43 29 chr1 19583314 19583453 -223080900 - MIR SINE MIR -55 207 67 324 223 68 29 chr1 19583958 19584061 -223080292 + MIR SINE MIR 80 186 -76 727 275 24 24 chr1 19584301 19584512 -223079841 + MIR SINE MIR 51 261 -1 201 39 0 0 chr1 19584694 19584720 -223079633 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1867 128 3 24 chr1 19584722 19585010 -223079343 - AluJb SINE Alu -30 282 1 271 254 49 16 chr1 19585106 19585228 -223079125 + MIR SINE MIR 21 146 -62 374 264 87 34 chr1 19585329 19585434 -223078919 + MIR SINE MIR 37 135 -127 1341 162 25 30 chr1 19585434 19585474 -223078879 - MER46A DNA MER2_type -2497 234 195 2061 129 0 10 chr1 19585474 19585783 -223078570 - AluSx SINE Alu -6 306 1 1341 162 25 30 chr1 19585783 19585977 -223078376 - MER46A DNA MER2_type -2536 195 1 374 264 87 34 chr1 19585977 19586078 -223078275 + MIR SINE MIR 135 253 -9 2224 111 0 0 chr1 19586127 19586433 -223077920 - AluSx SINE Alu -6 306 1 811 219 33 14 chr1 19586435 19586645 -223077708 + LTR23 LTR ERV1 224 437 0 2054 117 0 7 chr1 19586888 19587188 -223077165 + AluSx SINE Alu 1 298 -14 291 114 0 0 chr1 19587472 19587516 -223076837 + (T)n Simple_repeat Simple_repeat 1 44 0 218 291 65 83 chr1 19588387 19588617 -223075736 + L2 LINE L2 2575 2800 -514 431 276 17 0 chr1 19589337 19589453 -223074900 - MIR SINE MIR -105 157 40 199 266 101 13 chr1 19590165 19590244 -223074109 - MIR SINE MIR -88 174 89 373 245 9 28 chr1 19590473 19590579 -223073774 - MER53 DNA DNA -85 104 1 410 264 50 0 chr1 19591216 19591337 -223073016 + L3 LINE CR1 1344 1470 -107 297 279 165 14 chr1 19591405 19591562 -223072791 + MIR SINE MIR 3 180 -67 206 215 139 13 chr1 19592075 19592154 -223072199 - MIR3 SINE MIR -33 175 87 286 221 59 0 chr1 19592298 19592366 -223071987 - MIR SINE MIR -74 188 117 549 217 196 0 chr1 19592594 19592737 -223071616 + MER58C DNA MER1_type 45 215 0 633 238 20 7 chr1 19592885 19593036 -223071317 + MIR SINE MIR 21 173 -89 2132 110 7 3 chr1 19593036 19593345 -223071008 + AluSp SINE Alu 1 310 -3 1661 141 4 0 chr1 19593376 19593624 -223070729 + AluJo SINE Alu 1 249 -63 2301 94 3 0 chr1 19593944 19594252 -223070101 + AluSx SINE Alu 1 309 -3 2057 128 0 3 chr1 19594736 19595032 -223069321 - AluSx SINE Alu -17 295 1 203 79 26 0 chr1 19595260 19595298 -223069055 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 215 357 12 12 chr1 19595841 19595925 -223068428 - MIR SINE MIR -102 106 23 2314 71 0 0 chr1 19596506 19596800 -223067553 - AluY SINE Alu -17 294 1 2391 80 0 3 chr1 19597184 19597498 -223066855 - AluSq SINE Alu 0 313 1 2316 91 0 3 chr1 19598527 19598836 -223065517 - AluSc SINE Alu -1 308 1 492 288 92 38 chr1 19599026 19599373 -223064980 - L1ME LINE L1 -333 5788 5423 274 262 5 64 chr1 19600127 19600314 -223064039 + G-rich Low_complexity Low_complexity 5 180 0 187 263 66 53 chr1 19601214 19601290 -223063063 - MIR SINE MIR -55 153 77 287 167 15 0 chr1 19602270 19602336 -223062017 + C-rich Low_complexity Low_complexity 3 69 0 292 283 148 67 chr1 19602879 19603162 -223061191 + L2 LINE L2 2871 3176 -137 2325 90 3 0 chr1 19603233 19603544 -223060809 - AluSx SINE Alu 0 312 1 1730 147 39 7 chr1 19603544 19603830 -223060523 - AluJb SINE Alu -17 295 1 794 157 72 12 chr1 19603836 19604002 -223060351 - L1MA8 LINE L1 -1 6290 6115 1441 139 52 38 chr1 19604002 19604269 -223060084 - AluJo SINE Alu -3 309 39 2695 183 19 4 chr1 19604272 19604807 -223059546 - L1MA8 LINE L1 -161 6130 5588 210 270 11 67 chr1 19606663 19606752 -223057601 + MIR SINE MIR 60 143 -65 215 239 11 125 chr1 19607121 19607146 -223057207 + MIR SINE MIR 8 34 -228 2091 119 34 3 chr1 19607146 19607439 -223056914 + AluSx SINE Alu 1 302 -10 215 239 11 125 chr1 19607439 19607501 -223056852 + MIR SINE MIR 34 85 -177 2405 210 114 72 chr1 19607915 19608005 -223056348 + L1MC4a LINE L1 6523 6608 -1200 2459 100 0 0 chr1 19608005 19608314 -223056039 - AluSg SINE Alu -1 309 1 2405 210 114 72 chr1 19608314 19608777 -223055576 + L1MC4a LINE L1 6608 7050 -758 2383 92 0 29 chr1 19608777 19609092 -223055261 + AluSc SINE Alu 1 306 -3 2405 210 114 72 chr1 19609092 19609668 -223054685 + L1MC4a LINE L1 7050 7712 -96 2370 101 0 3 chr1 19609735 19610043 -223054310 + AluSg SINE Alu 1 307 -3 1892 164 3 20 chr1 19610118 19610416 -223053937 + AluJb SINE Alu 3 295 -17 184 402 27 36 chr1 19610905 19611017 -223053336 - L3b LINE CR1 -44 1539 1429 509 296 30 18 chr1 19611158 19611327 -223053026 - MIR SINE MIR -3 259 89 871 225 6 0 chr1 19611440 19611600 -223052753 - AluSg/x SINE Alu -20 292 132 2331 105 7 0 chr1 19611604 19611908 -223052445 - AluSq SINE Alu -7 306 1 263 115 0 115 chr1 19611925 19611986 -223052367 - MER69 DNA AcHobo -22 2504 2451 1684 142 91 11 chr1 19611997 19612017 -223052336 - AluSg SINE Alu -4 306 289 686 53 11 0 chr1 19612017 19612112 -223052241 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 1684 142 91 11 chr1 19612112 19612365 -223051988 - AluSg SINE Alu -21 289 11 459 246 26 0 chr1 19612374 19612488 -223051865 - MER69 DNA AcHobo -1075 151 35 388 293 12 24 chr1 19612713 19612880 -223051473 - MER5A DNA MER1_type -13 166 1 199 314 24 32 chr1 19613164 19613288 -223051065 - L2 LINE L2 -165 3107 2985 * 558 274 50 84 chr1 19613274 19613595 -223050758 - L2 LINE L2 -45 3227 2918 1309 231 126 47 chr1 19613663 19614212 -223050141 + MLT1G1 LTR MaLR 4 595 0 538 344 108 7 chr1 19614347 19614652 -223049701 - L3 LINE CR1 -2 1575 1240 329 292 167 6 chr1 19614729 19614897 -223049456 + MIR SINE MIR 67 261 -1 796 54 9 0 chr1 19615550 19615661 -223048692 - L1PA4 LINE L1 0 6155 6044 263 304 109 27 chr1 19616174 19616358 -223047995 + MLT1K LTR MaLR 150 348 -240 1541 178 4 11 chr1 19616440 19616715 -223047638 - AluJo SINE Alu 0 312 40 217 294 15 0 chr1 19616862 19616930 -223047423 - MIR3 SINE MIR -50 158 90 1935 157 3 26 chr1 19618246 19618551 -223045802 - AluJo SINE Alu -14 298 1 296 277 176 14 chr1 19618559 19618707 -223045646 + Charlie8 DNA MER1_type 83 254 -2163 2046 138 7 0 chr1 19618901 19619192 -223045161 - AluSx SINE Alu -19 293 1 483 325 31 0 chr1 19619309 19619472 -223044881 - MIR SINE MIR -54 208 41 281 287 139 0 chr1 19619540 19619641 -223044712 - MER63A DNA MER1_type 0 210 96 200 298 35 0 chr1 19619816 19619873 -223044480 - MIR3 SINE MIR -41 167 109 356 159 0 79 chr1 19620186 19620249 -223044104 - AluSg/x SINE Alu -111 191 137 306 261 99 18 chr1 19620250 19620361 -223043992 + MLT1K LTR MaLR 433 552 -36 830 216 111 11 chr1 19620896 19621137 -223043216 + MIR SINE MIR 1 262 0 317 209 76 38 chr1 19621129 19621234 -223043119 - MIR SINE MIR -107 155 47 * 228 250 0 115 chr1 19621381 19621411 -223042942 - MIR3 SINE MIR -28 180 148 1128 197 99 3 chr1 19621411 19621705 -223042648 + MER33 DNA MER1_type 3 324 0 228 250 0 115 chr1 19621705 19621778 -223042575 - MIR3 SINE MIR -60 148 89 2433 98 0 0 chr1 19622178 19622485 -223041868 + AluSq SINE Alu 1 307 -6 182 118 29 0 chr1 19622509 19622543 -223041810 + (CA)n Simple_repeat Simple_repeat 1 35 0 628 273 49 0 chr1 19622543 19622726 -223041627 + MER112 DNA MER1_type 67 258 -2 210 313 195 0 chr1 19622762 19622890 -223041463 + MIR SINE MIR 110 262 0 1449 167 0 13 chr1 19623196 19623423 -223040930 + AluJo SINE Alu 34 257 -55 445 305 33 33 chr1 19623533 19623743 -223040610 + MIR SINE MIR 47 256 -6 244 290 0 0 chr1 19623805 19623867 -223040486 + L3 LINE CR1 1416 1477 -100 203 204 0 0 chr1 19623898 19623942 -223040411 + L2 LINE L2 3270 3313 0 1889 156 14 7 chr1 19624024 19624313 -223040040 - AluJb SINE Alu -14 298 8 585 214 84 8 chr1 19624313 19624444 -223039909 - MER5B DNA MER1_type -34 144 4 1116 154 42 0 chr1 19624487 19624701 -223039652 + L1MA8 LINE L1 6067 6289 -2 182 256 0 0 chr1 19625001 19625040 -223039313 - L2 LINE L2 -86 3186 3148 227 209 93 23 chr1 19625419 19625505 -223038848 + L2 LINE L2 3161 3252 -61 207 264 157 25 chr1 19626506 19626627 -223037726 + L2 LINE L2 2533 2669 -645 1761 140 0 51 chr1 19626762 19627055 -223037298 - AluJo SINE Alu -14 298 21 622 228 74 0 chr1 19627702 19627864 -223036489 - MER45A DNA AcHobo 0 178 5 1326 217 101 42 chr1 19627868 19628302 -223036051 - MLT1C LTR MaLR -6 461 2 227 257 87 55 chr1 19629697 19629915 -223034438 - L2 LINE L2 -182 3090 2866 231 311 51 20 chr1 19629952 19630148 -223034205 - L2 LINE L2 -557 2757 2556 371 289 31 8 chr1 19630664 19630792 -223033561 + MIR SINE MIR 15 145 -117 2117 129 7 0 chr1 19631323 19631610 -223032743 + AluSx SINE Alu 2 290 -22 263 321 0 0 chr1 19631939 19632020 -223032333 + L1ME4a LINE L1 5967 6047 -74 785 227 64 10 chr1 19632049 19632252 -223032101 + MER58C DNA MER1_type 2 215 0 927 174 14 7 chr1 19632358 19632766 -223031587 + CT-rich Low_complexity Low_complexity 1 410 0 1904 131 7 4 chr1 19632789 19633064 -223031289 - AluSx SINE Alu -23 289 14 439 188 19 32 chr1 19633124 19633278 -223031075 + CT-rich Low_complexity Low_complexity 4 155 0 202 180 67 11 chr1 19633745 19633834 -223030519 + (CAGG)n Simple_repeat Simple_repeat 3 96 0 550 221 210 10 chr1 19634234 19634429 -223029924 + MIR SINE MIR 23 256 -6 3305 210 17 31 chr1 19635451 19635585 -223028768 - L1ME LINE L1 -2023 4621 4487 2058 126 10 26 chr1 19635585 19635895 -223028458 - AluSx SINE Alu -7 305 1 3305 210 17 31 chr1 19635895 19636573 -223027780 - L1ME LINE L1 -2157 4487 3820 446 199 68 7 chr1 19636572 19636718 -223027635 - L1MA10 LINE L1 0 6334 6180 * 2426 100 10 0 chr1 19636769 19637079 -223027274 + AluSp SINE Alu 1 313 0 426 251 72 0 chr1 19637091 19637258 -223027095 - L1MEc LINE L1 -5410 986 808 1862 107 23 8 chr1 19637271 19637534 -223026819 + AluSq SINE Alu 21 287 -26 319 51 0 0 chr1 19637562 19637601 -223026752 - MER4B LTR ERV1 -73 537 499 2915 238 59 31 chr1 19637602 19638214 -223026139 - L1MEc LINE L1 -5571 825 185 2194 138 3 0 chr1 19638214 19638518 -223025835 - AluSx SINE Alu -7 305 1 2915 238 59 31 chr1 19638518 19638681 -223025672 - L1MEc LINE L1 -6211 185 28 1503 217 43 20 chr1 19638670 19639177 -223025176 - L1ME LINE L1 -2806 3838 3320 * 414 250 74 0 chr1 19639178 19639326 -223025027 - L1ME LINE L1 -3446 3198 3040 1284 258 82 59 chr1 19639327 19640205 -223024148 - L1ME LINE L1 -3661 2983 2127 2030 122 0 25 chr1 19640205 19640484 -223023869 - AluSx SINE Alu -40 272 1 1284 258 82 59 chr1 19640484 19640667 -223023686 - L1ME LINE L1 -4517 2127 1950 1772 95 4 0 chr1 19640667 19640898 -223023455 - AluSg/x SINE Alu 0 312 81 1284 258 82 59 chr1 19640898 19641147 -223023206 - L1ME LINE L1 -4694 1950 1679 293 214 30 42 chr1 19641491 19641620 -223022733 - L1ME LINE L1 -5931 703 40 22 0 0 0 chr1 19641672 19641694 -223022659 + AT_rich Low_complexity Low_complexity 1 22 0 924 105 8 0 chr1 19641866 19641990 -223022363 + AluY SINE Alu 1 125 -186 741 143 8 8 chr1 19642027 19642146 -223022207 - L1MB3 LINE L1 -165 6018 5897 1900 152 40 0 chr1 19642146 19642442 -223021911 - AluJb SINE Alu -4 308 1 351 55 36 0 chr1 19642456 19642511 -223021842 - L1PA8 LINE L1 -2 6170 6114 2292 110 0 0 chr1 19642514 19642941 -223021412 - AluSg SINE Alu 0 427 1 1886 220 23 25 chr1 19642944 19643425 -223020928 - L1M4 LINE L1 -816 5330 4851 * 6206 73 25 3 chr1 19643423 19644290 -223020063 + L1PA13 LINE L1 5259 6144 -19 1318 216 18 0 chr1 19644309 19644592 -223019761 - L1M4 LINE L1 -1286 4860 4573 421 253 34 28 chr1 19644648 19644783 -223019570 - L1ME4a LINE L1 -254 5867 5729 2145 120 0 41 chr1 19644783 19645099 -223019254 - AluSx SINE Alu -9 303 1 421 253 34 28 chr1 19645099 19645141 -223019212 - L1ME4a LINE L1 -392 5729 5689 186 343 79 21 chr1 19645221 19645239 -223019114 - MIR3 SINE MIR -30 178 162 323 127 155 28 chr1 19645239 19645310 -223019043 + MADE1 DNA Mariner 1 80 0 186 343 79 21 chr1 19645310 19645431 -223018922 - MIR3 SINE MIR -46 162 31 * 271 254 0 14 chr1 19645397 19645468 -223018885 + MIR SINE MIR 45 114 -148 1632 128 110 11 chr1 19645601 19645883 -223018470 - AluJb SINE Alu -2 310 1 25 90 0 0 chr1 19645918 19645985 -223018368 + AT_rich Low_complexity Low_complexity 1 67 0 2716 180 64 46 chr1 19646110 19646765 -223017588 + LTR65 LTR ERV1 2 668 -1 2472 74 0 3 chr1 19646770 19647068 -223017285 - AluSc SINE Alu -12 297 1 1005 164 11 11 chr1 19647144 19647327 -223017026 - MER5A DNA MER1_type -6 183 1 194 337 71 0 chr1 19647346 19647444 -223016909 + MIR SINE MIR 158 262 0 1942 167 3 3 chr1 19647656 19647961 -223016392 + AluJb SINE Alu 1 305 -7 719 109 0 0 chr1 19648056 19648157 -223016196 - AluSq/x SINE Alu -176 137 37 575 141 0 8 chr1 19648299 19648523 -223015830 - AluJb SINE Alu -15 297 1 332 329 100 0 chr1 19649314 19649484 -223014869 - MIR SINE MIR -45 217 31 2351 104 0 0 chr1 19649844 19650143 -223014210 - AluSc SINE Alu -10 299 1 256 339 118 0 chr1 19650361 19650488 -223013865 - L2 LINE L2 -19 3253 3112 2172 101 3 14 chr1 19650504 19650801 -223013552 + AluSq SINE Alu 1 294 -19 255 250 0 0 chr1 19651737 19651805 -223012548 + (TG)n Simple_repeat Simple_repeat 1 68 0 188 366 11 11 chr1 19651805 19651898 -223012455 + L2 LINE L2 3180 3272 0 319 274 17 34 chr1 19651940 19652057 -223012296 - MIR SINE MIR -62 146 32 345 244 56 16 chr1 19653108 19653253 -223011100 - MIR SINE MIR -58 150 31 558 284 88 0 chr1 19653681 19653885 -223010468 + MIR SINE MIR 35 256 -6 374 325 48 18 chr1 19653928 19654094 -223010259 + MIR SINE MIR 31 201 -61 343 207 37 0 chr1 19654137 19654219 -223010134 - MER5A DNA MER1_type -96 93 9 2382 98 3 0 chr1 19654464 19654759 -223009594 + AluSg SINE Alu 1 296 -14 309 93 19 0 chr1 19654787 19654841 -223009512 + MADE1 DNA Mariner 26 80 0 506 243 9 9 chr1 19655980 19656091 -223008262 + MER81 DNA DNA 3 113 -1 294 256 225 16 chr1 19656092 19656221 -223008132 + MIR SINE MIR 104 259 -3 805 237 27 5 chr1 19656383 19656569 -223007784 + MIR3 SINE MIR 12 201 -7 225 210 0 0 chr1 19656827 19656889 -223007464 + (TTCA)n Simple_repeat Simple_repeat 2 63 0 644 222 22 4 chr1 19656901 19657082 -223007271 + MIR SINE MIR 1 262 0 196 268 71 0 chr1 19657087 19657143 -223007210 - L2 LINE L2 -1 3271 3212 2301 133 33 25 chr1 19657489 19657850 -223006503 - THE1B LTR MaLR 0 364 1 343 194 24 40 chr1 19657986 19658110 -223006243 - Charlie7 DNA MER1_type -60 2552 2431 1541 148 0 29 chr1 19658116 19658359 -223005994 + AluJo SINE Alu 1 236 -76 563 191 86 0 chr1 19658642 19658747 -223005606 + MER81 DNA DNA 1 114 0 2047 99 67 3 chr1 19658798 19659082 -223005271 + AluSg SINE Alu 9 310 0 2585 233 23 11 chr1 19660003 19660832 -223003521 - L1MEc LINE L1 -3372 2843 2038 867 166 0 0 chr1 19660844 19661015 -223003338 + AluJb SINE Alu 147 317 0 1679 252 94 59 chr1 19661066 19661696 -223002657 - MLT2F LTR ERVL -2 661 10 2747 274 65 24 chr1 19661715 19662255 -223002098 - L1MEc LINE L1 -4407 1989 1472 1868 68 0 0 chr1 19662255 19662476 -223001877 + AluY SINE Alu 1 221 -90 2747 274 65 24 chr1 19662476 19663064 -223001289 - L1MEc LINE L1 -4924 1472 815 461 217 0 58 chr1 19663557 19663677 -223000676 + MER3 DNA MER1_type 1 113 -96 2818 119 24 32 chr1 19663840 19664145 -223000208 - LTR46 LTR ERV1 -2 458 157 2561 54 0 0 chr1 19664145 19664439 -222999914 - AluY SINE Alu -17 294 1 2818 119 24 32 chr1 19664439 19664595 -222999758 - LTR46 LTR ERV1 -303 157 1 520 189 57 25 chr1 19664849 19664971 -222999382 - MIR SINE MIR -116 146 21 267 244 88 44 chr1 19666845 19667005 -222997348 + L2 LINE L2 2925 3091 -181 1002 73 0 0 chr1 19667449 19667585 -222996768 + (TTC)n Simple_repeat Simple_repeat 2 137 0 864 144 0 0 chr1 19667587 19667705 -222996648 - FLAM_C SINE Alu -15 118 1 961 299 34 44 chr1 19667754 19668170 -222996183 - L1MEc LINE L1 -5867 529 117 2185 127 3 13 chr1 19668170 19668484 -222995869 - AluSq SINE Alu -2 311 1 961 299 34 44 chr1 19668484 19668566 -222995787 - L1MEc LINE L1 -6279 117 36 268 288 250 8 chr1 19669212 19669344 -222995009 + MIR3 SINE MIR 24 187 -21 457 232 36 11 chr1 19670322 19670450 -222993903 + MIR SINE MIR 35 166 -58 231 203 0 0 chr1 19670698 19670762 -222993591 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 251 242 16 0 chr1 19670762 19670824 -222993529 - L2 LINE L2 0 3313 3251 447 240 32 32 chr1 19670981 19671106 -222993247 + MIR SINE MIR 65 189 -73 715 239 143 0 chr1 19671168 19671377 -222992976 + MIR SINE MIR 16 254 -8 180 0 0 0 chr1 19671990 19672010 -222992343 + (GGA)n Simple_repeat Simple_repeat 1 20 0 180 125 0 0 chr1 19672242 19672274 -222992079 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 311 288 163 20 chr1 19672276 19672429 -222991924 - L2 LINE L2 -2 3270 3096 2105 135 0 0 chr1 19672616 19672905 -222991448 + AluSx SINE Alu 1 289 -23 235 261 0 0 chr1 19672985 19673031 -222991322 - L2 LINE L2 -205 3067 3022 * 405 291 69 46 chr1 19673027 19673202 -222991151 - L2 LINE L2 0 3313 3135 204 265 166 81 chr1 19673213 19673424 -222990929 - L2 LINE L2 -338 2976 2748 2181 143 10 0 chr1 19673424 19673731 -222990622 - AluSx SINE Alu -2 310 1 402 318 82 64 chr1 19673747 19673967 -222990386 - L1ME2 LINE L1 -227 5937 5714 930 265 41 18 chr1 19673975 19674381 -222989972 - L1ME2 LINE L1 -526 5638 5225 2174 222 26 129 chr1 19674394 19675386 -222988967 - L2 LINE L2 -566 2748 1859 853 248 59 21 chr1 19675469 19675755 -222988598 - MLT1K LTR MaLR -160 428 132 2290 90 3 19 chr1 19675993 19676304 -222988049 - AluSg SINE Alu -4 306 1 836 171 131 9 chr1 19676305 19676527 -222987826 - Charlie5 DNA MER1_type -19 2593 2345 1264 162 25 0 chr1 19676531 19676735 -222987618 - AluJo SINE Alu -18 294 86 417 204 0 11 chr1 19676736 19676829 -222987524 - Charlie5 DNA MER1_type -264 2348 2257 2265 118 0 3 chr1 19676829 19677125 -222987228 + AluSx SINE Alu 1 295 -17 420 178 198 0 chr1 19677152 19677253 -222987100 - MER3 DNA MER1_type -41 168 48 300 269 134 0 chr1 19677260 19677394 -222986959 - MIR3 SINE MIR -54 154 3 369 300 33 33 chr1 19677594 19677714 -222986639 - L2 LINE L2 -9 3263 3144 686 229 45 0 chr1 19678195 19678352 -222986001 - MER45A DNA AcHobo -14 164 1 192 275 66 33 chr1 19678448 19678539 -222985814 - MIR SINE MIR -51 211 118 2214 130 3 3 chr1 19678673 19679139 -222985214 - AluSx SINE Alu 0 466 1 510 57 0 0 chr1 19679658 19679728 -222984625 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 764 290 69 54 chr1 19679736 19680143 -222984210 - L2 LINE L2 -21 3251 2839 314 305 122 46 chr1 19680329 19680431 -222983922 - L1ME4a LINE L1 -21 6100 6007 1879 146 7 40 chr1 19680431 19680571 -222983782 + AluJb SINE Alu 1 144 -168 2027 115 4 4 chr1 19680571 19680874 -222983479 + AluSx SINE Alu 6 308 0 1879 146 7 40 chr1 19680874 19681033 -222983320 + AluJb SINE Alu 144 291 -21 314 305 122 46 chr1 19681033 19681431 -222982922 - L1ME4a LINE L1 -114 6007 5562 243 0 0 0 chr1 19681827 19681854 -222982499 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1765 118 11 63 chr1 19681857 19682144 -222982209 - AluJb SINE Alu -32 280 9 423 0 0 0 chr1 19682626 19682673 -222981680 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1005 271 67 59 chr1 19682867 19683055 -222981298 - L1ME2 LINE L1 -220 5933 5748 1931 171 0 3 chr1 19683055 19683360 -222980993 - AluJo SINE Alu -8 304 1 1005 271 67 59 chr1 19683360 19683986 -222980367 - L1ME2 LINE L1 -405 5748 5139 2066 129 0 4 chr1 19683986 19684264 -222980089 - AluSc SINE Alu -32 277 1 1005 271 67 59 chr1 19684264 19684860 -222979493 - L1ME2 LINE L1 -1014 5139 4549 432 304 50 9 chr1 19684893 19685247 -222979106 - L1ME2 LINE L1 -877 1613 1356 657 159 8 0 chr1 19685249 19685554 -222978799 + CT-rich Low_complexity Low_complexity 1 180 0 1788 186 3 3 chr1 19685554 19685865 -222978488 - AluJb SINE Alu 0 616 1 328 243 0 47 chr1 19685942 19686036 -222978317 - L1ME2 LINE L1 -4875 1244 1154 1731 243 25 45 chr1 19686036 19686551 -222977802 - MLT1D LTR MaLR 0 505 1 328 243 0 47 chr1 19686551 19686563 -222977790 - L1ME2 LINE L1 -4965 1154 1143 711 263 31 8 chr1 19686584 19686839 -222977514 - L1ME2 LINE L1 -4962 1157 897 1211 242 134 40 chr1 19686839 19686933 -222977420 - L2 LINE L2 -1548 1766 1682 2741 110 3 0 chr1 19686933 19687306 -222977047 - THE1C LTR MaLR -1 374 1 1211 242 134 40 chr1 19687306 19687690 -222976663 - L2 LINE L2 -1632 1682 1243 1391 94 0 0 chr1 19687728 19687898 -222976455 + AluSq SINE Alu 2 171 -142 437 153 0 0 chr1 19687898 19687987 -222976366 + AluS SINE Alu 224 312 0 322 290 164 45 chr1 19688102 19688499 -222975854 + L2 LINE L2 2827 3270 -2 3320 172 72 61 chr1 19689048 19689647 -222974706 + L1MB7 LINE L1 5295 5907 -277 2563 125 28 39 chr1 19689647 19690078 -222974275 + MSTB LTR MaLR 1 426 0 3320 172 72 61 chr1 19690078 19690328 -222974025 + L1MB7 LINE L1 5907 6153 -31 2339 100 7 0 chr1 19690453 19690752 -222973601 - AluSx SINE Alu -11 301 1 213 240 0 0 chr1 19690766 19690816 -222973537 + A-rich Low_complexity Low_complexity 1 50 0 260 255 92 20 chr1 19690816 19690914 -222973439 + MIR SINE MIR 137 241 -21 420 232 286 69 chr1 19690914 19691263 -222973090 + LTR16C LTR ERVL 1 425 -66 370 106 16 0 chr1 19691280 19691341 -222973012 - AluSq/x SINE Alu -191 111 66 2020 136 0 0 chr1 19691657 19691937 -222972416 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr1 19691939 19691965 -222972388 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1862 152 12 24 chr1 19691996 19692325 -222972028 - MER44D DNA MER2_type -8 601 7 585 234 123 18 chr1 19692331 19692502 -222971851 - MIR SINE MIR -27 235 47 198 167 0 0 chr1 19692889 19692925 -222971428 + CT-rich Low_complexity Low_complexity 2 37 0 2014 137 3 37 chr1 19692927 19693248 -222971105 - AluSx SINE Alu -2 310 1 214 357 0 0 chr1 19693433 19693489 -222970864 - L2 LINE L2 -12 3260 3205 755 275 90 5 chr1 19693598 19693820 -222970533 - MIR SINE MIR -1 261 21 273 261 65 11 chr1 19693927 19694019 -222970334 - L2 LINE L2 -243 3029 2933 666 174 0 0 chr1 19694331 19694452 -222969901 + FLAM_A SINE Alu 22 142 0 539 234 7 35 chr1 19694583 19694724 -222969629 + MIR SINE MIR 47 183 -79 805 240 132 36 chr1 19694736 19694783 -222969570 + MER113 DNA MER1_type? 24 65 -456 1491 184 20 65 chr1 19694783 19694995 -222969358 - MER58B DNA MER1_type -2079 341 121 1755 194 3 0 chr1 19694995 19695288 -222969065 - AluJo SINE Alu -18 294 1 1491 184 20 65 chr1 19695288 19695348 -222969005 - MER58B DNA MER1_type -2299 121 86 2308 109 0 0 chr1 19695348 19695641 -222968712 - AluSc SINE Alu -16 293 1 1491 184 20 65 chr1 19695641 19695720 -222968633 - MER58B DNA MER1_type -2334 86 5 805 240 132 36 chr1 19695720 19695848 -222968505 + MER113 DNA MER1_type? 65 179 -342 2374 92 0 0 chr1 19695848 19696141 -222968212 + AluSx SINE Alu 1 293 -19 805 240 132 36 chr1 19696141 19696380 -222967973 + MER113 DNA MER1_type? 179 479 -42 254 198 5 95 chr1 19696901 19697011 -222967342 + MIR SINE MIR 112 205 -3 239 321 60 0 chr1 19697082 19697166 -222967187 + MER102a DNA MER1_type 1 89 -241 1936 169 10 0 chr1 19697347 19697642 -222966711 - AluJo SINE Alu -14 298 1 24 0 0 0 chr1 19697647 19697671 -222966682 + AT_rich Low_complexity Low_complexity 1 24 0 2253 225 96 20 chr1 19697746 19698359 -222965994 - MER21B LTR ERV1 -111 752 93 26 0 0 0 chr1 19698417 19698443 -222965910 + AT_rich Low_complexity Low_complexity 1 26 0 354 186 0 147 chr1 19698452 19698581 -222965772 + MER102a DNA MER1_type 221 330 0 2052 122 148 16 chr1 19698647 19699025 -222965328 - MSTA LTR MaLR 0 428 1 341 254 15 181 chr1 19699033 19699133 -222965220 - MIR3 SINE MIR -3 259 227 2523 59 0 40 chr1 19699133 19699456 -222964897 + AluY SINE Alu 1 310 -1 341 254 15 181 chr1 19699456 19699615 -222964738 - MIR3 SINE MIR -35 227 43 340 314 38 0 chr1 19699736 19699841 -222964512 + MIR SINE MIR 88 196 -66 223 218 36 0 chr1 19699943 19699998 -222964355 + L2 LINE L2 3005 3061 -211 444 181 35 0 chr1 19700131 19700223 -222964130 - MIR SINE MIR -61 147 98 417 291 179 0 chr1 19700344 19700540 -222963813 + MIR SINE MIR 32 262 0 283 279 36 9 chr1 19700796 19700907 -222963446 + MIR SINE MIR 120 233 -29 267 243 6 0 chr1 19701172 19701243 -222963110 - L1ME LINE L1 -367 5803 5731 338 331 37 0 chr1 19701932 19702068 -222962285 + MIR SINE MIR 89 229 -33 444 228 79 24 chr1 19702355 19702482 -222961871 - MIR SINE MIR -21 241 108 1840 121 26 0 chr1 19702531 19702796 -222961557 + AluSx SINE Alu 1 272 -40 183 42 0 0 chr1 19702808 19702832 -222961521 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1746 236 87 45 chr1 19703133 19703799 -222960554 + L1ME3 LINE L1 5448 6141 -21 429 279 49 8 chr1 19704150 19704272 -222960081 + MIR3 SINE MIR 15 141 -67 214 273 0 18 chr1 19704480 19704535 -222959818 + MIR SINE MIR 208 261 -1 622 278 51 17 chr1 19704539 19704715 -222959638 - MIR SINE MIR -21 241 60 352 247 31 80 chr1 19705451 19705550 -222958803 - MIR SINE MIR -1 261 159 1973 144 7 23 chr1 19705550 19705856 -222958497 - AluJo SINE Alu -11 301 1 1524 157 68 25 chr1 19705861 19706141 -222958212 - AluSx SINE Alu -20 292 1 352 247 31 80 chr1 19706141 19706197 -222958156 - MIR SINE MIR -107 155 108 1144 189 183 6 chr1 19706236 19706548 -222957805 + L1MB8 LINE L1 5812 6178 0 311 241 54 62 chr1 19706635 19706747 -222957606 - L2 LINE L2 0 3313 3203 277 190 47 36 chr1 19707041 19707145 -222957208 - MIR SINE MIR -60 202 97 316 372 29 7 chr1 19707489 19707626 -222956727 + MIR3 SINE MIR 30 169 -39 393 194 130 74 chr1 19707675 19707783 -222956570 - MER81 DNA DNA 0 114 1 1416 201 87 22 chr1 19708283 19708655 -222955698 - Charlie4a DNA MER1_type -1459 502 95 2066 107 0 14 chr1 19708655 19708971 -222955382 + AluSp SINE Alu 1 313 0 1416 201 87 22 chr1 19708971 19709046 -222955307 - Charlie4a DNA MER1_type -1866 95 26 232 145 129 81 chr1 19709679 19709741 -222954612 + MIR SINE MIR 88 152 -110 234 0 0 0 chr1 19709841 19709867 -222954486 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr1 19710727 19710754 -222953599 + GC_rich Low_complexity Low_complexity 1 27 0 26 74 0 0 chr1 19711013 19711067 -222953286 + GC_rich Low_complexity Low_complexity 1 54 0 237 128 0 0 chr1 19711189 19711236 -222953117 + (CGG)n Simple_repeat Simple_repeat 2 48 0 554 266 54 49 chr1 19712046 19712249 -222952104 - MIR SINE MIR -42 220 17 196 261 207 0 chr1 19713042 19713153 -222951200 + MIR SINE MIR 50 183 -79 225 235 0 59 chr1 19713829 19713897 -222950456 + MIR3 SINE MIR 96 159 -49 238 255 0 0 chr1 19714162 19714213 -222950140 + MIR3 SINE MIR 151 201 -7 1397 235 37 10 chr1 19714580 19714988 -222949365 - L1MB8 LINE L1 -2 6176 5758 514 267 20 7 chr1 19715357 19715507 -222948846 + MIR3 SINE MIR 16 167 -41 225 0 0 0 chr1 19716144 19716169 -222948184 + (C)n Simple_repeat Simple_repeat 1 25 0 214 318 76 0 chr1 19716794 19716860 -222947493 - MIR3 SINE MIR -29 179 109 364 223 61 95 chr1 19717355 19717503 -222946850 + MIR SINE MIR 50 192 -70 219 239 0 0 chr1 19718105 19718172 -222946181 + (CA)n Simple_repeat Simple_repeat 1 67 0 272 309 87 53 chr1 19718497 19718704 -222945649 + L2 LINE L2 3046 3259 -13 364 184 40 0 chr1 19718916 19718992 -222945361 + MIR SINE MIR 74 152 -110 244 341 15 68 chr1 19719598 19719730 -222944623 + MIR SINE MIR 88 212 -50 373 252 134 35 chr1 19719772 19719972 -222944381 - MIR SINE MIR -12 250 33 230 309 20 81 chr1 19720355 19720504 -222943849 + MIR3 SINE MIR 4 143 -65 213 239 28 42 chr1 19720944 19721015 -222943338 + L2 LINE L2 3244 3313 0 632 251 35 66 chr1 19721022 19721208 -222943145 - MIR SINE MIR -10 252 73 2234 97 0 13 chr1 19721208 19721519 -222942834 + AluSg SINE Alu 1 307 -3 632 251 35 66 chr1 19721519 19721559 -222942794 - MIR SINE MIR -189 73 33 356 307 44 9 chr1 19721604 19721718 -222942635 + MIR SINE MIR 95 212 -50 339 262 35 5 chr1 19721957 19722073 -222942280 + MIR SINE MIR 33 153 -68 457 328 82 11 chr1 19722692 19722875 -222941478 - L2 LINE L2 -151 3121 2926 246 343 0 9 chr1 19722974 19723079 -222941274 + CT-rich Low_complexity Low_complexity 4 107 0 372 257 129 0 chr1 19723779 19723880 -222940473 - MIR SINE MIR -65 143 30 1579 168 0 43 chr1 19724537 19724840 -222939513 - AluJo SINE Alu -22 290 1 1256 115 0 0 chr1 19724916 19725098 -222939255 + AluSg/x SINE Alu 131 312 0 361 220 199 28 chr1 19725320 19725461 -222938892 + MIR SINE MIR 47 211 -51 263 391 19 26 chr1 19726088 19726244 -222938109 - MIR3 SINE MIR -37 171 17 424 312 58 24 chr1 19726711 19726916 -222937437 - MIR SINE MIR -20 242 31 600 146 0 0 chr1 19727291 19727394 -222936959 + (TCCA)n Simple_repeat Simple_repeat 2 104 0 426 268 134 38 chr1 19727498 19727655 -222936698 - MIR3 SINE MIR -21 187 16 287 328 181 29 chr1 19727952 19728190 -222936163 - L3b LINE CR1 -27 1556 1283 393 240 72 56 chr1 19728404 19728529 -222935824 - MIR3 SINE MIR -21 187 61 271 241 12 36 chr1 19729268 19729351 -222935002 - MIR SINE MIR -87 121 41 215 292 62 0 chr1 19729383 19729448 -222934905 - L2 LINE L2 -2 3311 3243 556 246 42 30 chr1 19729646 19729813 -222934540 - MIR SINE MIR -64 198 30 339 231 0 0 chr1 19730202 19730267 -222934086 + MIR SINE MIR 83 147 -61 259 284 0 6 chr1 19730834 19730907 -222933446 + MIR SINE MIR 69 140 -68 306 224 229 23 chr1 19730999 19731155 -222933198 - MIR3 SINE MIR -59 149 7 351 331 53 103 chr1 19731813 19731918 -222932435 - L2 LINE L2 -5 3267 3158 1803 134 26 54 chr1 19731918 19732231 -222932122 + AluJo SINE Alu 1 304 -8 351 331 53 103 chr1 19732231 19732503 -222931850 - L2 LINE L2 -114 3158 2909 472 316 53 18 chr1 19733111 19733339 -222931014 + L1ME4a LINE L1 5849 6084 -37 1710 128 40 75 chr1 19733453 19733553 -222930800 + L1MB3 LINE L1 5799 5901 -282 2063 123 6 22 chr1 19733553 19733870 -222930483 + AluJb SINE Alu 1 312 0 1710 128 40 75 chr1 19733870 19734144 -222930209 + L1MB3 LINE L1 5901 6160 -23 1928 105 59 0 chr1 19734146 19734432 -222929921 - AluJb SINE Alu -9 303 1 192 246 169 15 chr1 19734817 19734882 -222929471 + L2 LINE L2 3188 3262 -10 206 359 26 0 chr1 19734981 19735059 -222929294 - L2 LINE L2 -7 3265 3186 661 288 79 5 chr1 19735260 19735479 -222928874 - MIR SINE MIR 0 262 29 191 326 62 54 chr1 19735747 19735876 -222928477 - MIR SINE MIR -123 139 10 204 319 255 21 chr1 19736173 19736314 -222928039 + MIR SINE MIR 86 259 -3 205 247 41 41 chr1 19736403 19736476 -222927877 - L2 LINE L2 -173 3099 3027 1936 154 0 3 chr1 19736737 19737036 -222927317 - AluJo SINE Alu -14 298 1 198 342 44 26 chr1 19737531 19737645 -222926708 + MIR SINE MIR 6 121 -141 553 290 129 13 chr1 19737685 19737909 -222926444 - MIR SINE MIR -11 251 2 458 292 22 0 chr1 19738026 19738163 -222926190 - MIR3 SINE MIR -26 182 43 301 326 42 0 chr1 19738636 19738731 -222925622 - MIR SINE MIR -47 215 117 215 245 0 0 chr1 19738844 19738893 -222925460 + L2 LINE L2 3224 3272 0 512 291 0 8 chr1 19739130 19739257 -222925096 - MIR SINE MIR -64 144 19 554 250 70 17 chr1 19741717 19741889 -222922464 + MIR SINE MIR 64 244 -18 640 199 6 6 chr1 19741910 19742081 -222922272 + (CACCAT)n Simple_repeat Simple_repeat 1 171 0 * 689 212 6 0 chr1 19742048 19742227 -222922126 + (CAT)n Simple_repeat Simple_repeat 1 180 0 215 308 0 0 chr1 19742349 19742401 -222921952 + L2 LINE L2 3213 3264 -8 542 244 100 14 chr1 19743177 19743375 -222920978 - MIR SINE MIR -36 226 15 425 221 58 0 chr1 19743482 19743586 -222920767 + LTR67 LTR ERVL 113 222 -335 195 320 112 0 chr1 19744206 19744308 -222920045 + MIR SINE MIR 96 219 -43 675 226 27 38 chr1 19744344 19744366 -222919987 - MIR SINE MIR -71 191 170 2222 99 0 7 chr1 19744366 19744684 -222919669 - AluSx SINE Alu 0 312 1 675 226 27 38 chr1 19744684 19744847 -222919506 - MIR SINE MIR -92 170 8 502 217 196 0 chr1 19744983 19745126 -222919227 - MER58C DNA MER1_type 0 215 45 305 265 118 0 chr1 19745354 19745456 -222918897 + MIR SINE MIR 117 230 -32 220 215 139 13 chr1 19745566 19745645 -222918708 + MIR3 SINE MIR 87 175 -33 319 278 167 16 chr1 19746159 19746316 -222918037 - MIR SINE MIR -67 141 3 432 264 50 0 chr1 19746384 19746505 -222917848 - L3 LINE CR1 -107 1470 1344 355 245 9 28 chr1 19747142 19747248 -222917105 + MER53 DNA DNA 1 104 -85 216 266 101 13 chr1 19747477 19747556 -222916797 + MIR SINE MIR 89 174 -88 450 276 17 0 chr1 19748268 19748384 -222915969 + MIR SINE MIR 40 157 -105 2121 135 0 3 chr1 19749895 19750206 -222914147 - AluSx SINE Alu -2 310 1 218 108 27 0 chr1 19750324 19750361 -222913992 - MIR SINE MIR -145 117 80 410 329 82 6 chr1 19750667 19750837 -222913516 + MIR SINE MIR 28 210 -52 372 307 234 13 chr1 19751463 19751860 -222912493 - L2 LINE L2 -2 3311 2827 276 294 78 10 chr1 19752370 19752472 -222911881 + L2 LINE L2 3204 3312 -1 205 398 29 10 chr1 19752521 19752624 -222911729 + MIR SINE MIR 86 190 -72 212 314 117 7 chr1 19753940 19754077 -222910276 - MIR SINE MIR -65 197 46 506 291 62 11 chr1 19757040 19757219 -222907134 + MIR SINE MIR 67 254 -8 2225 98 3 0 chr1 19758117 19758403 -222905950 + AluSq SINE Alu 1 287 -26 285 51 0 0 chr1 19758403 19758442 -222905911 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 370 239 18 62 chr1 19762584 19762697 -222901656 - MIR3 SINE MIR -86 122 15 668 251 59 14 chr1 19762898 19763110 -222901243 - MIR SINE MIR -28 234 19 1613 147 82 25 chr1 19764205 19764484 -222899869 - AluJo SINE Alu -17 295 1 186 43 0 0 chr1 19765764 19765787 -222898566 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 339 226 118 11 chr1 19765812 19765905 -222898448 + MIR SINE MIR 58 160 -102 2345 98 0 0 chr1 19765905 19766200 -222898153 + AluSq SINE Alu 1 295 -18 186 43 0 0 chr1 19767003 19767026 -222897327 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 264 206 196 22 chr1 19768075 19768167 -222896186 + MIR SINE MIR 2 109 -153 482 213 57 8 chr1 19769051 19769173 -222895180 + MIR SINE MIR 66 193 -69 273 242 242 16 chr1 19769819 19769947 -222894406 + MIR SINE MIR 63 219 -43 203 184 0 0 chr1 19770645 19770683 -222893670 - L2 LINE L2 -86 3227 3190 361 348 133 11 chr1 19770709 19771062 -222893291 + L2 LINE L2 2339 2734 -580 190 314 59 39 chr1 19771107 19771209 -222893144 + L2 LINE L2 2856 2959 -313 2321 105 0 3 chr1 19771478 19771782 -222892571 + AluSq SINE Alu 1 303 -10 1944 163 42 15 chr1 19772132 19773007 -222891346 + L1MD1 LINE L1 5274 6242 0 198 313 136 20 chr1 19774192 19774339 -222890014 + L2 LINE L2 2705 2868 -446 356 259 63 81 chr1 19775163 19775337 -222889016 + MIR3 SINE MIR 33 203 -5 220 227 0 0 chr1 19775797 19775841 -222888512 + (TATG)n Simple_repeat Simple_repeat 4 47 0 249 220 0 20 chr1 19778215 19778265 -222886088 - L2 LINE L2 -8 3305 3257 204 263 195 51 chr1 19778674 19778792 -222885561 - MIR SINE MIR -105 157 23 308 250 36 36 chr1 19779576 19779688 -222884665 + GA-rich Low_complexity Low_complexity 4 115 0 356 246 141 75 chr1 19780793 19780992 -222883361 - MIR SINE MIR -4 258 47 309 288 192 0 chr1 19782524 19782649 -222881704 + L2 LINE L2 3107 3255 -17 1352 181 26 0 chr1 19782813 19783039 -222881314 + AluJb SINE Alu 65 296 -16 650 322 97 11 chr1 19783560 19783920 -222880433 + L1MEd LINE L1 443 833 -5286 2273 87 3 3 chr1 19783963 19784251 -222880102 + AluSp SINE Alu 16 303 -10 270 256 67 0 chr1 19784412 19784502 -222879851 + L1MEd LINE L1 1012 1107 -5024 211 184 0 0 chr1 19786212 19786250 -222878103 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2500 200 93 12 chr1 19788039 19788164 -222876189 - Charlie1a DNA MER1_type -1306 1455 1342 1944 162 0 13 chr1 19788164 19788472 -222875881 + AluJb SINE Alu 1 304 -8 2500 200 93 12 chr1 19788472 19788990 -222875363 - Charlie1a DNA MER1_type -1419 1342 760 1766 237 133 6 chr1 19788961 19789493 -222874860 - Charlie1a DNA MER1_type -855 600 1 * 221 351 22 52 chr1 19790004 19790138 -222874215 - L2 LINE L2 0 3272 3143 759 279 104 0 chr1 19790206 19790428 -222873925 - MIR SINE MIR -4 258 14 205 354 24 0 chr1 19790436 19790518 -222873835 - L2 LINE L2 -324 2948 2865 496 230 55 25 chr1 19791961 19792161 -222872192 + L2 LINE L2 2750 2955 -359 1076 176 25 25 chr1 19792218 19792281 -222872072 - AluSx SINE Alu -113 199 137 2367 99 10 0 chr1 19792281 19792585 -222871768 - AluSp SINE Alu -6 307 1 1076 176 25 25 chr1 19792585 19792720 -222871633 - AluSx SINE Alu -174 138 1 355 308 63 14 chr1 19792720 19792863 -222871490 - MIR SINE MIR -111 151 2 601 253 167 0 chr1 19793617 19793791 -222870562 - MIR SINE MIR -50 212 10 320 270 82 99 chr1 19794811 19795056 -222869297 - MIR SINE MIR -12 250 11 225 108 0 0 chr1 19795859 19795896 -222868457 + (CA)n Simple_repeat Simple_repeat 1 37 0 878 226 116 0 chr1 19796786 19796985 -222867368 - MIR SINE MIR 0 262 41 878 150 0 29 chr1 19798187 19798327 -222866026 - AluJb SINE Alu -176 136 1 357 179 179 0 chr1 19798849 19798927 -222865426 + L1MB8 LINE L1 6081 6172 -6 1502 114 0 23 chr1 19799084 19799304 -222865049 - AluJo SINE Alu -11 301 87 193 312 57 50 chr1 19799342 19799483 -222864870 - L2 LINE L2 -8 3305 3164 239 175 0 0 chr1 19801213 19801253 -222863100 + tRNA-Gly-GGA tRNA tRNA 2 41 -34 425 231 157 8 chr1 19802447 19802568 -222861785 + L2 LINE L2 3175 3313 0 2244 112 3 3 chr1 19803835 19804138 -222860215 + AluSx SINE Alu 1 303 -9 668 168 140 11 chr1 19804503 19804682 -222859671 + LTR50 LTR ERVL 8 209 -586 282 233 14 0 chr1 19804796 19804869 -222859484 + LTR50 LTR ERVL 611 684 -111 611 323 19 49 chr1 19806497 19806760 -222857593 - MIR SINE MIR -1 261 7 297 312 36 29 chr1 19808616 19808754 -222855599 + L2 LINE L2 3175 3313 0 356 292 69 46 chr1 19809365 19809495 -222854858 + MIR SINE MIR 16 148 -60 776 225 14 0 chr1 19810726 19810868 -222853485 + AluJo SINE Alu 126 269 -43 1309 167 171 0 chr1 19810941 19811187 -222853166 + AluJo SINE Alu 1 288 -24 1871 164 7 0 chr1 19811576 19811874 -222852479 - AluJo SINE Alu -12 300 1 237 33 0 0 chr1 19811909 19811939 -222852414 + (A)n Simple_repeat Simple_repeat 1 30 0 1156 277 92 70 chr1 19812224 19812259 -222852094 + L1 LINE L1 2746 2779 -3367 2258 113 3 0 chr1 19812259 19812561 -222851792 + AluSp SINE Alu 3 305 -8 1156 277 92 70 chr1 19812561 19812843 -222851510 + L1 LINE L1 2779 3053 -3093 2171 135 0 0 chr1 19812843 19813147 -222851206 - AluSx SINE Alu -8 304 1 1156 277 92 70 chr1 19813147 19814332 -222850021 + L1 LINE L1 3053 4282 -1864 1414 159 78 30 chr1 19814333 19814462 -222849891 + AluJo SINE Alu 1 122 -191 2164 135 0 22 chr1 19814462 19814780 -222849573 + AluSx SINE Alu 1 311 -1 1414 159 78 30 chr1 19814780 19814950 -222849403 + AluJo SINE Alu 122 313 0 768 184 127 0 chr1 19814952 19815110 -222849243 + FRAM SINE Alu 1 176 0 1595 263 105 10 chr1 19815606 19816306 -222848047 - L1 LINE L1 -996 5150 4381 833 312 71 20 chr1 19816387 19816949 -222847404 + L1MEc LINE L1 1270 1811 -851 432 320 43 49 chr1 19817028 19817378 -222846975 + L1MEc LINE L1 1963 2310 -4086 1944 138 7 3 chr1 19817682 19817980 -222846373 + AluJb SINE Alu 1 299 -13 180 125 0 0 chr1 19818690 19818722 -222845631 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 269 26 26 0 chr1 19819919 19819957 -222844396 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 967 178 128 6 chr1 19823244 19823507 -222840846 + MER33 DNA MER1_type 1 287 -37 1573 104 148 8 chr1 19823507 19823757 -222840596 + AluSg1 SINE Alu 1 285 -24 242 116 23 0 chr1 19823760 19823803 -222840550 + GA-rich Low_complexity Low_complexity 1 44 0 993 122 6 17 chr1 19823806 19823987 -222840366 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 258 305 12 0 chr1 19825194 19825276 -222839077 - L2 LINE L2 -21 3251 3169 315 0 0 0 chr1 19826174 19826209 -222838144 + (CA)n Simple_repeat Simple_repeat 2 36 0 309 250 75 33 chr1 19830468 19830588 -222833765 + L1M4 LINE L1 1443 1567 -4975 867 200 18 30 chr1 19836684 19836849 -222827504 - AluJo SINE Alu -24 288 126 1296 138 0 74 chr1 19839118 19839349 -222825004 - AluJb SINE Alu -19 293 80 600 118 17 84 chr1 19839449 19839568 -222824785 - AluJb SINE Alu -200 112 2 1850 165 0 14 chr1 19839666 19839963 -222824390 + AluSx SINE Alu 1 293 -19 208 305 17 0 chr1 19840078 19840137 -222824216 + L3 LINE CR1 1056 1115 -462 1617 148 21 32 chr1 19840410 19840693 -222823660 - AluJb SINE Alu -13 299 20 944 206 31 0 chr1 19841288 19841482 -222822871 + MER105 DNA DNA 1 200 -4 196 256 0 0 chr1 19842190 19842233 -222822120 + MIR3 SINE MIR 152 194 -14 1648 127 35 92 chr1 19846627 19846942 -222817411 + AluJb SINE Alu 1 297 -15 2503 60 0 3 chr1 19848727 19849027 -222815326 + AluY SINE Alu 1 299 -12 223 294 262 0 chr1 19849130 19849256 -222815097 - MIR SINE MIR -10 252 94 1072 194 0 5 chr1 19850230 19850426 -222813927 + AluJo SINE Alu 84 278 -34 225 196 22 0 chr1 19850428 19850474 -222813879 + GA-rich Low_complexity Low_complexity 5 51 0 414 277 144 20 chr1 19850503 19850698 -222813655 + MIR SINE MIR 31 249 -13 248 221 61 117 chr1 19851135 19851298 -222813055 - MER103 DNA DNA -11 155 2 470 229 46 18 chr1 19851339 19851448 -222812905 + L2 LINE L2 3190 3301 -12 2013 121 14 27 chr1 19851590 19851887 -222812466 + AluSx SINE Alu 1 293 -19 578 232 89 12 chr1 19851973 19852141 -222812212 - Charlie8 DNA MER1_type -2192 225 45 2278 107 0 0 chr1 19852266 19852557 -222811796 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr1 19852557 19852580 -222811773 + AT_rich Low_complexity Low_complexity 1 23 0 1139 175 57 24 chr1 19855155 19855366 -222808987 - MER20 DNA MER1_type -1 218 1 1754 158 36 16 chr1 19855813 19856117 -222808236 - AluJb SINE Alu -2 310 1 2078 119 3 20 chr1 19856121 19856424 -222807929 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 19856426 19856447 -222807906 + AT_rich Low_complexity Low_complexity 1 21 0 435 155 42 0 chr1 19857964 19858035 -222806318 + AluJ/FLAM SINE Alu 1 74 -238 21 0 0 0 chr1 19859957 19859978 -222804375 + AT_rich Low_complexity Low_complexity 1 21 0 1791 124 0 0 chr1 19860211 19860470 -222803883 - AluSx SINE Alu -5 307 49 644 164 27 0 chr1 19861128 19861238 -222803115 + FLAM_A SINE Alu 1 113 -29 195 114 0 0 chr1 19861246 19861281 -222803072 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 473 222 71 16 chr1 19861284 19861410 -222802943 + FLAM_A SINE Alu 1 133 0 205 370 76 13 chr1 19861421 19861645 -222802708 + L2 LINE L2 2365 2602 -712 * 416 211 0 0 chr1 19861639 19861710 -222802643 + L2 LINE L2 3242 3312 -1 3202 138 42 11 chr1 19861812 19862385 -222801968 - L1MB3 LINE L1 0 6183 5593 992 129 7 7 chr1 19862389 19862536 -222801817 - FAM SINE Alu -29 156 10 998 153 46 25 chr1 19862536 19862732 -222801621 - L1MB3 LINE L1 -564 5619 5420 414 278 13 85 chr1 19862733 19862907 -222801446 + L1ME1 LINE L1 5786 5949 -213 183 156 0 0 chr1 19862932 19862964 -222801389 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 338 223 45 27 chr1 19863153 19863265 -222801088 - L1P5 LINE L1 -725 5431 5318 2323 86 0 0 chr1 19863469 19863773 -222800580 + AluSx SINE Alu 1 304 -8 201 263 193 35 chr1 19864627 19864741 -222799612 + L2 LINE L2 3173 3304 -9 * 440 293 32 43 chr1 19864739 19864927 -222799426 - MIR SINE MIR -6 256 71 278 269 0 0 chr1 19865414 19865493 -222798860 + L1ME1 LINE L1 6052 6289 -44 2046 92 30 16 chr1 19865591 19865895 -222798458 - AluSg SINE Alu -2 308 1 299 24 0 24 chr1 19867102 19867143 -222797210 + (TA)n Simple_repeat Simple_repeat 1 40 0 358 151 7 26 chr1 19867806 19868096 -222796257 + AluJo SINE Alu 1 334 0 1656 197 0 0 chr1 19868297 19868601 -222795752 + AluJb SINE Alu 1 304 -8 1678 175 6 19 chr1 19868711 19869026 -222795327 + AluJo SINE Alu 1 311 -1 682 302 101 34 chr1 19869035 19869512 -222794841 + L1ME LINE L1 5311 5819 -302 369 257 143 7 chr1 19869591 19869731 -222794622 + HAL1b LINE L1 1187 1345 -3 363 326 84 74 chr1 19869858 19870030 -222794323 + L2 LINE L2 2953 3131 -141 1904 139 3 23 chr1 19870030 19870339 -222794014 + AluSx SINE Alu 1 303 -9 363 326 84 74 chr1 19870339 19870476 -222793877 + L2 LINE L2 3131 3265 -7 1469 273 142 36 chr1 19870479 19871213 -222793140 + L2 LINE L2 2247 3110 -203 2058 125 0 3 chr1 19871213 19871517 -222792836 + AluSx SINE Alu 1 303 -9 1469 273 142 36 chr1 19871517 19871723 -222792630 + L2 LINE L2 3110 3293 -20 274 291 39 47 chr1 19871924 19872051 -222792302 - MIR SINE MIR -59 203 78 263 261 101 43 chr1 19872690 19872813 -222791540 + L2 LINE L2 2965 3080 -233 2060 114 21 0 chr1 19872813 19873102 -222791251 - AluSq SINE Alu -18 295 1 263 261 101 43 chr1 19873102 19873232 -222791121 + L2 LINE L2 3080 3310 -3 1842 171 127 76 chr1 19873713 19874434 -222789919 + L1MC2 LINE L1 5594 6275 -58 851 220 5 27 chr1 19874445 19874631 -222789722 + AluJo SINE Alu 121 302 -10 2079 111 3 0 chr1 19874638 19874927 -222789426 + AluSq SINE Alu 1 290 -23 449 235 0 0 chr1 19874985 19875089 -222789264 + FLAM_A SINE Alu 36 139 0 2101 83 0 17 chr1 19875097 19875414 -222788939 + AluY SINE Alu 1 312 0 29 60 0 0 chr1 19875418 19875468 -222788885 + AT_rich Low_complexity Low_complexity 1 50 0 372 343 40 20 chr1 19875781 19875982 -222788371 + L2 LINE L2 2556 2760 -554 441 0 0 0 chr1 19876088 19876137 -222788216 + (CA)n Simple_repeat Simple_repeat 2 50 0 247 343 116 40 chr1 19876774 19877025 -222787328 + L2 LINE L2 3022 3291 -22 1779 157 7 0 chr1 19877465 19877758 -222786595 + AluJb SINE Alu 1 295 -17 629 325 142 13 chr1 19879168 19879470 -222784883 + MER102b DNA MER1_type 1 341 0 938 198 82 5 chr1 19879494 19879701 -222784652 + MER58A DNA MER1_type 1 223 -1 678 196 184 34 chr1 19880106 19880285 -222784068 - MIR SINE MIR -45 217 12 1330 93 88 19 chr1 19880288 19880503 -222783850 + MER30 DNA MER1_type 1 230 0 773 102 0 169 chr1 19880560 19880726 -222783627 + AluJb SINE Alu 2 139 -173 26 74 0 0 chr1 19880741 19880795 -222783558 + AT_rich Low_complexity Low_complexity 1 54 0 272 56 0 0 chr1 19880898 19880934 -222783419 + MER30B DNA MER1_type 43 78 -112 1667 135 29 11 chr1 19880990 19881264 -222783089 + AluJo SINE Alu 11 289 -23 429 233 82 121 chr1 19881947 19882077 -222782276 - MIR SINE MIR 0 262 141 1683 129 0 0 chr1 19882077 19882318 -222782035 + AluSx SINE Alu 49 289 -23 429 233 82 121 chr1 19882318 19882393 -222781960 - MIR SINE MIR -121 141 65 347 374 20 41 chr1 19882393 19882588 -222781765 + L1ME LINE L1 5371 5561 -560 2041 111 17 0 chr1 19882923 19883220 -222781133 + AluSg1 SINE Alu 1 302 -7 1973 115 3 0 chr1 19883347 19883633 -222780720 + AluSx SINE Alu 11 297 -15 2162 85 3 17 chr1 19884124 19884419 -222779934 - AluSg SINE Alu -19 291 1 31 0 0 0 chr1 19884638 19884669 -222779684 + AT_rich Low_complexity Low_complexity 1 31 0 773 164 0 75 chr1 19886296 19886455 -222777898 + FRAM SINE Alu 1 146 -30 2035 81 27 34 chr1 19886457 19886754 -222777599 - AluSq SINE Alu -18 295 1 2131 121 0 0 chr1 19887465 19887771 -222776582 + AluSx SINE Alu 1 306 -6 1359 182 149 0 chr1 19887823 19888119 -222776234 + MER58B DNA MER1_type 2 341 0 2285 99 0 0 chr1 19888304 19888608 -222775745 + AluY SINE Alu 1 304 -7 1615 139 36 7 chr1 19889611 19889892 -222774461 + MSTB-int LTR MaLR 1349 1637 -14 2399 154 24 14 chr1 19889910 19890332 -222774021 + MSTB LTR MaLR 1 426 0 304 323 0 10 chr1 19890855 19890954 -222773399 + MIR SINE MIR 39 136 -126 236 125 38 188 chr1 19891003 19891083 -222773270 - L2 LINE L2 -19 3294 3227 222 237 175 31 chr1 19891191 19891288 -222773065 + MIR SINE MIR 119 229 -33 1896 141 0 13 chr1 19891315 19891621 -222772732 + AluSx SINE Alu 1 302 -10 200 280 140 0 chr1 19893028 19893121 -222771232 - L2 LINE L2 0 3313 3208 230 178 67 0 chr1 19893201 19893246 -222771107 + L2 LINE L2 3221 3268 -4 1684 146 16 39 chr1 19894145 19894350 -222770003 + AluSx SINE Alu 1 198 -114 2463 66 0 0 chr1 19894350 19894655 -222769698 + AluY SINE Alu 1 305 -6 1684 146 16 39 chr1 19894655 19894758 -222769595 + AluSx SINE Alu 198 302 -10 2028 121 3 10 chr1 19895128 19895435 -222768918 - AluSg SINE Alu -5 305 1 292 300 0 12 chr1 19895761 19895841 -222768512 - MIR SINE MIR -182 80 2 575 272 118 64 chr1 19896561 19896584 -222767769 - MER102a DNA MER1_type -1087 330 310 1844 125 34 7 chr1 19896584 19896880 -222767473 + AluJb SINE Alu 1 304 -8 575 272 118 64 chr1 19896880 19897169 -222767184 - MER102a DNA MER1_type -1107 310 1 514 347 41 16 chr1 19900542 19900784 -222763569 - MIR SINE MIR -13 249 2 2332 92 0 0 chr1 19901399 19901703 -222762650 - AluSx SINE Alu -8 304 1 2225 87 3 10 chr1 19901713 19902011 -222762342 - AluSq SINE Alu -17 296 1 1848 91 80 0 chr1 19902012 19902287 -222762066 - AluSq SINE Alu -16 297 1 31 0 0 0 chr1 19902506 19902537 -222761816 + AT_rich Low_complexity Low_complexity 1 31 0 373 276 8 16 chr1 19905034 19905157 -222759196 + MIR SINE MIR 18 139 -69 1377 87 0 73 chr1 19906084 19906302 -222758051 - AluSp SINE Alu 0 313 112 710 156 8 23 chr1 19908649 19908777 -222755576 - FLAM_A SINE Alu -6 136 11 420 272 48 24 chr1 19909150 19909275 -222755078 + L2 LINE L2 3184 3311 -2 254 303 15 0 chr1 19909432 19909498 -222754855 + L2 LINE L2 3198 3264 -8 1706 176 4 0 chr1 19909558 19909825 -222754528 - AluJo SINE Alu -31 281 14 938 112 0 0 chr1 19912088 19912213 -222752140 - AluSq/x SINE Alu -188 125 1 1592 125 4 42 chr1 19912999 19913263 -222751090 + AluJo SINE Alu 57 310 -2 21 0 0 0 chr1 19913732 19913753 -222750600 + AT_rich Low_complexity Low_complexity 1 21 0 1072 149 7 0 chr1 19913816 19913970 -222750383 + AluJb SINE Alu 1 155 -157 270 320 196 19 chr1 19914383 19914746 -222749607 + L3 LINE CR1 1148 1574 -3 255 309 11 11 chr1 19917369 19917463 -222746890 - MIR SINE MIR -13 249 156 530 167 0 0 chr1 19917466 19917550 -222746803 - Tigger7 DNA MER2_type 0 2587 2504 2882 163 58 2 chr1 19917552 19918074 -222746279 - Tigger7 DNA MER2_type -182 551 1 610 286 7 7 chr1 19918074 19918214 -222746139 - MIR SINE MIR -108 154 15 566 282 154 14 chr1 19918359 19918579 -222745774 + MIR SINE MIR 12 262 0 294 24 24 0 chr1 19918974 19919016 -222745337 - AluY SINE Alu -259 43 1 2121 124 20 0 chr1 19919050 19919348 -222745005 + AluSx SINE Alu 5 308 -4 546 258 178 62 chr1 19919348 19919623 -222744730 - L2 LINE L2 -1004 2310 2004 22 35 0 0 chr1 19919786 19919815 -222744538 + AT_rich Low_complexity Low_complexity 1 29 0 1567 167 34 4 chr1 19919815 19920084 -222744269 + AluJo SINE Alu 1 277 -35 378 0 0 0 chr1 19920091 19920133 -222744220 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 779 202 0 0 chr1 19920137 19920266 -222744087 - AluJb SINE Alu -181 131 3 1401 304 153 48 chr1 19920356 19920593 -222743760 + L2 LINE L2 601 812 -2502 1590 183 63 14 chr1 19920593 19920877 -222743476 + AluJo SINE Alu 1 298 -14 1401 304 153 48 chr1 19920877 19921135 -222743218 + L2 LINE L2 812 1042 -2272 2088 149 3 0 chr1 19921135 19921444 -222742909 + AluSx SINE Alu 1 310 -2 1401 304 153 48 chr1 19921444 19922178 -222742175 + L2 LINE L2 1042 1960 -1354 192 324 44 0 chr1 19922220 19922288 -222742065 + L2 LINE L2 3238 3308 -5 418 277 130 43 chr1 19922525 19922618 -222741735 - MIR SINE MIR 0 262 178 1921 155 40 0 chr1 19922618 19922914 -222741439 - AluJb SINE Alu -4 308 1 418 277 130 43 chr1 19922914 19923051 -222741302 - MIR SINE MIR -84 178 12 196 323 46 0 chr1 19923100 19923165 -222741188 + L2 LINE L2 3238 3305 -8 2156 118 10 3 chr1 19923640 19923937 -222740416 + AluSx SINE Alu 1 299 -13 241 149 43 0 chr1 19924274 19924321 -222740032 - MER103 DNA DNA -11 155 107 708 278 129 72 chr1 19924328 19924632 -222739721 + L2 LINE L2 1584 1869 -1445 799 121 0 50 chr1 19924632 19924772 -222739581 - FLAM_C SINE Alu 0 133 1 708 278 129 72 chr1 19924772 19925065 -222739288 + L2 LINE L2 1869 2215 -1099 247 317 118 57 chr1 19925783 19926029 -222738324 + L2 LINE L2 2979 3239 -33 592 228 53 69 chr1 19926249 19926337 -222738016 + L1M4 LINE L1 4342 4430 -1716 2496 61 3 3 chr1 19926337 19926632 -222737721 - AluSp SINE Alu -18 295 1 592 228 53 69 chr1 19926632 19926846 -222737507 + L1M4 LINE L1 4430 4639 -1507 1888 149 24 14 chr1 19926846 19927135 -222737218 - AluJo SINE Alu -7 305 14 2590 58 3 10 chr1 19927948 19928261 -222736092 - AluY SINE Alu 0 311 1 280 247 37 0 chr1 19928586 19928667 -222735686 + Tigger7 DNA MER2_type 8 91 -614 * 1273 119 70 4 chr1 19928648 19928875 -222735478 + Tigger7 DNA MER2_type 2246 2487 0 240 329 0 14 chr1 19929085 19929155 -222735198 - MIR SINE MIR -181 81 13 206 315 27 0 chr1 19929176 19929249 -222735104 - MIR SINE MIR -89 119 45 1505 155 4 0 chr1 19929604 19929843 -222734510 - AluJb SINE Alu -9 303 64 396 0 0 0 chr1 19930058 19930102 -222734251 + (TG)n Simple_repeat Simple_repeat 2 45 0 543 193 76 23 chr1 19930373 19930544 -222733809 + MER113 DNA MER1_type? 38 217 -304 309 109 0 0 chr1 19931243 19931289 -222733064 + (CCCTG)n Simple_repeat Simple_repeat 4 49 0 323 235 111 20 chr1 19931547 19931700 -222732653 - L1ME4a LINE L1 0 6121 5955 1019 156 0 0 chr1 19931733 19931887 -222732466 - FRAM SINE Alu -12 154 1 1014 183 203 12 chr1 19932669 19932762 -222731591 + AluJo SINE Alu 2 76 -236 207 0 0 0 chr1 19932762 19932785 -222731568 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1014 183 203 12 chr1 19932785 19932942 -222731411 + AluJo SINE Alu 76 300 -12 491 182 29 193 chr1 19933776 19934056 -222730297 + MIR SINE MIR 28 261 -1 1342 218 65 0 chr1 19934347 19934640 -222729713 - MLT1A1 LTR MaLR 0 365 54 246 169 325 12 chr1 19935801 19935884 -222728469 - L2 LINE L2 -22 3291 3183 217 245 138 24 chr1 19936226 19936354 -222727999 - MIR3 SINE MIR -51 157 8 335 271 65 9 chr1 19936697 19936804 -222727549 + MIR SINE MIR 149 261 -1 360 286 9 18 chr1 19937167 19937279 -222727074 + L2 LINE L2 3193 3303 -10 396 323 130 10 chr1 19937306 19937498 -222726855 + MIR SINE MIR 21 235 -27 2135 139 0 7 chr1 19938537 19938840 -222725513 - AluSg SINE Alu -9 301 1 294 259 25 12 chr1 19938859 19938940 -222725413 - MIR SINE MIR -67 195 114 242 250 90 30 chr1 19939337 19939437 -222724916 + MIR SINE MIR 157 262 0 191 265 241 0 chr1 19939480 19939563 -222724790 - MIR SINE MIR -71 191 89 803 150 0 39 chr1 19939885 19940012 -222724341 + FLAM_A SINE Alu 2 123 -10 534 202 65 19 chr1 19940682 19940836 -222723517 - MIR SINE MIR -62 146 25 221 86 57 0 chr1 19940884 19940919 -222723434 - MIR SINE MIR -64 144 108 1256 185 3 96 chr1 19941352 19941541 -222722812 - AluJo SINE Alu -28 284 134 534 31 0 0 chr1 19941541 19941605 -222722748 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 1256 185 3 96 chr1 19941605 19941728 -222722625 - AluJo SINE Alu -178 134 1 450 111 25 37 chr1 19941966 19942047 -222722306 - MER116 DNA Mariner 0 80 1 558 241 126 6 chr1 19942433 19942607 -222721746 + MIR SINE MIR 14 208 -54 207 0 0 0 chr1 19943618 19943641 -222720712 + (T)n Simple_repeat Simple_repeat 1 23 0 215 190 38 63 chr1 19943898 19943977 -222720376 + L2 LINE L2 3232 3308 -5 430 299 62 52 chr1 19944144 19944355 -222719998 + MIR SINE MIR 2 214 -48 2144 142 0 0 chr1 19944620 19944923 -222719430 - AluSx SINE Alu -9 303 1 1843 128 4 8 chr1 19944926 19945192 -222719161 - AluSx SINE Alu -4 308 44 197 327 164 10 chr1 19945488 19945592 -222718761 + L2 LINE L2 2607 2726 -588 229 232 36 0 chr1 19945889 19945945 -222718408 + L2 LINE L2 3202 3259 -54 2364 101 0 3 chr1 19946112 19946419 -222717934 - AluSq SINE Alu -7 306 1 206 246 18 18 chr1 19948347 19948404 -222715949 + L3 LINE CR1 581 637 -940 190 317 0 33 chr1 19949342 19949402 -222714951 - MIR3 SINE MIR 0 208 151 550 163 10 0 chr1 19949928 19950026 -222714327 - L1MB7 LINE L1 -7 6177 6079 1889 131 4 4 chr1 19950027 19950295 -222714058 + AluSq SINE Alu 1 268 -45 537 214 87 70 chr1 19951691 19951920 -222712433 + MIR SINE MIR 30 262 0 383 148 222 0 chr1 19951941 19952022 -222712331 + MER6B DNA MER2_type 1 99 -177 2024 99 16 51 chr1 19952214 19952526 -222711827 - AluSx SINE Alu -11 301 1 235 191 0 44 chr1 19954822 19954890 -222709463 + (CCG)n Simple_repeat Simple_repeat 2 66 0 1390 160 45 45 chr1 19955914 19956202 -222708151 - AluJb SINE Alu -24 288 1 21 36 0 0 chr1 19956622 19956650 -222707703 + AT_rich Low_complexity Low_complexity 1 28 0 350 243 34 40 chr1 19957059 19957207 -222707146 + L1ME3 LINE L1 6015 6161 -1 653 138 26 17 chr1 19957796 19957939 -222706414 + L1MC4 LINE L1 7880 7988 -7 1518 74 5 0 chr1 19959466 19959655 -222704698 + AluSg/x SINE Alu 120 309 -3 2139 135 3 0 chr1 19959662 19959959 -222704394 + AluSx SINE Alu 1 298 -14 2012 132 13 32 chr1 19960322 19960632 -222703721 - AluSx SINE Alu -8 304 1 867 171 26 0 chr1 19960734 19960886 -222703467 + FRAM SINE Alu 1 156 -10 383 87 0 29 chr1 19961120 19961189 -222703164 + L1MA1 LINE L1 6235 6301 -1 2066 128 10 7 chr1 19961335 19961633 -222702720 - AluJo SINE Alu -13 299 1 1774 106 121 11 chr1 19961909 19962173 -222702180 + AluSg SINE Alu 1 293 -17 25 31 0 0 chr1 19963044 19963076 -222701277 + AT_rich Low_complexity Low_complexity 1 32 0 1214 226 42 36 chr1 19964898 19965329 -222699024 + L2 LINE L2 2804 3278 -35 2238 107 0 10 chr1 19965997 19966297 -222698056 + AluSc SINE Alu 1 297 -12 2041 90 23 0 chr1 19966433 19966689 -222697664 + AluSx SINE Alu 6 267 -45 663 131 16 31 chr1 19966821 19967065 -222697288 + AluJb SINE Alu 1 299 -13 508 255 55 12 chr1 19967710 19967922 -222696431 - MIR SINE MIR 0 262 2 290 358 140 0 chr1 19968365 19968544 -222695809 - MIR SINE MIR -12 250 47 2577 258 114 18 chr1 19968574 19969876 -222694477 + L2 LINE L2 1868 3302 -11 1902 161 13 17 chr1 19969878 19970015 -222694338 + AluJo SINE Alu 1 137 -175 2379 93 10 0 chr1 19970015 19970317 -222694036 + AluSc SINE Alu 3 307 -2 1902 161 13 17 chr1 19970317 19970477 -222693876 + AluJo SINE Alu 137 297 -15 517 225 138 0 chr1 19970497 19970657 -222693696 - MIR SINE MIR -21 241 60 687 213 0 0 chr1 19970979 19971120 -222693233 + FLAM_C SINE Alu 2 142 -1 23 0 0 0 chr1 19971176 19971199 -222693154 + AT_rich Low_complexity Low_complexity 1 23 0 1937 135 0 60 chr1 19971199 19971517 -222692836 - AluJb SINE Alu -13 299 1 922 196 45 17 chr1 19971524 19971703 -222692650 + AluJb SINE Alu 129 312 0 677 303 60 4 chr1 19971703 19971937 -222692416 - MIR SINE MIR -1 261 15 1756 124 116 4 chr1 19972228 19972503 -222691850 + AluSx SINE Alu 1 306 -6 2413 97 3 0 chr1 19972567 19972875 -222691478 + AluSp SINE Alu 1 309 -4 501 298 60 0 chr1 19973141 19973309 -222691044 + L1ME3A LINE L1 5991 6168 -2 2226 99 27 0 chr1 19973413 19973705 -222690648 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr1 19973921 19973956 -222690397 + AT_rich Low_complexity Low_complexity 1 35 0 631 230 173 5 chr1 19974397 19974588 -222689765 - MIR SINE MIR -22 240 18 2362 93 0 3 chr1 19974932 19975233 -222689120 + AluSg SINE Alu 1 300 -10 434 266 62 0 chr1 19975235 19975348 -222689005 + L2 LINE L2 3192 3311 -2 2039 131 3 13 chr1 19976268 19976566 -222687787 - AluJb SINE Alu -17 295 1 1990 95 0 0 chr1 19976623 19976866 -222687487 + AluSx SINE Alu 1 243 -69 541 330 73 5 chr1 19978385 19978603 -222685750 + MIR SINE MIR 16 248 -14 248 235 0 59 chr1 19978894 19978962 -222685391 + L2 LINE L2 3209 3272 0 2314 100 0 7 chr1 19979210 19979509 -222684844 + AluSg SINE Alu 3 299 -11 1892 143 14 18 chr1 19979929 19980064 -222684289 + AluJb SINE Alu 1 135 -173 2411 58 3 20 chr1 19980064 19980387 -222683966 + AluY SINE Alu 1 311 0 1892 143 14 18 chr1 19980387 19980560 -222683793 + AluJb SINE Alu 135 308 0 2027 93 68 7 chr1 19980737 19981017 -222683336 + AluSq SINE Alu 1 297 -16 2417 83 3 10 chr1 19981018 19981319 -222683034 + AluSq SINE Alu 1 299 -14 2521 88 0 0 chr1 19981329 19981635 -222682718 + AluSx SINE Alu 1 306 -6 496 347 41 16 chr1 19982250 19982492 -222681861 + MIR SINE MIR 2 249 -13 526 262 134 80 chr1 19985865 19986154 -222678199 + MER102a DNA MER1_type 1 310 -1107 2001 125 34 7 chr1 19986154 19986450 -222677903 - AluJb SINE Alu -8 304 1 526 262 134 80 chr1 19986450 19986473 -222677880 + MER102a DNA MER1_type 310 330 0 281 300 0 12 chr1 19987193 19987273 -222677080 + MIR SINE MIR 2 80 -182 2186 121 3 10 chr1 19987599 19987906 -222676447 + AluSg SINE Alu 1 305 -5 1521 158 29 0 chr1 19989064 19989305 -222675048 - AluJb SINE Alu -21 291 44 2375 81 3 14 chr1 19989799 19990096 -222674257 + AluSp SINE Alu 1 294 -19 2427 89 0 7 chr1 19990267 19990570 -222673783 - AluSq SINE Alu -12 301 1 597 86 97 0 chr1 19990657 19990750 -222673603 + AluJb SINE Alu 192 293 -19 2148 136 3 0 chr1 19990752 19991053 -222673300 + AluSx SINE Alu 1 302 -10 2081 147 10 0 chr1 19991146 19991453 -222672900 + AluSx SINE Alu 3 312 0 1521 212 89 8 chr1 19991477 19991836 -222672517 + MLT1B LTR MaLR 3 390 0 676 206 8 0 chr1 19991855 19991981 -222672372 - FLAM_A SINE Alu -6 127 1 6224 131 59 40 chr1 19992012 19992386 -222671967 + Tigger3b DNA MER2_type 1 366 -2662 2140 130 3 0 chr1 19992386 19992678 -222671675 + AluSx SINE Alu 1 293 -19 6224 131 59 40 chr1 19992678 19992836 -222671517 + Tigger3b DNA MER2_type 366 520 -2508 1912 151 6 41 chr1 19992836 19993058 -222671295 - AluJb SINE Alu -5 307 79 207 0 0 0 chr1 19993058 19993081 -222671272 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2314 82 4 0 chr1 19993082 19993361 -222670992 - AluSc SINE Alu -29 280 1 1912 151 6 41 chr1 19993361 19993454 -222670899 - AluJb SINE Alu -232 80 1 6224 131 59 40 chr1 19993454 19993555 -222670798 + Tigger3b DNA MER2_type 520 618 -2410 646 226 0 0 chr1 19993555 19993679 -222670674 + FLAM_A SINE Alu 1 124 -9 6224 131 59 40 chr1 19993679 19994251 -222670102 + Tigger3b DNA MER2_type 618 1231 0 1791 154 32 0 chr1 19994286 19994565 -222669788 + AluJb SINE Alu 1 288 -24 2569 70 6 6 chr1 19994579 19994891 -222669462 + AluSp SINE Alu 1 312 -1 207 0 0 0 chr1 19994984 19995007 -222669346 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 181 259 37 0 chr1 19995200 19995254 -222669099 - L2 LINE L2 -216 3056 3001 664 255 39 26 chr1 19995266 19995497 -222668856 - MIR SINE MIR 0 262 29 724 177 0 15 chr1 19995845 19995975 -222668378 + MER45A DNA AcHobo 51 178 0 1629 118 61 50 chr1 19996998 19997059 -222667294 - AluJo SINE Alu -29 283 224 2308 95 0 10 chr1 19997059 19997365 -222666988 + AluSx SINE Alu 1 303 -9 1629 118 61 50 chr1 19997365 19997583 -222666770 - AluJo SINE Alu -88 224 1 710 270 93 56 chr1 19997670 19998302 -222666051 - L2 LINE L2 -36 3236 2548 1519 180 3 77 chr1 19998734 19999057 -222665296 + AluJb SINE Alu 1 299 -13 335 333 17 23 chr1 19999668 19999845 -222664508 - MIR SINE MIR -1 261 86 246 183 0 38 chr1 19999856 20000064 -222664289 + AluJo SINE Alu 2 300 -2 2156 129 0 0 chr1 20000877 20001164 -222663189 + AluSx SINE Alu 1 287 -25 416 232 11 11 chr1 20001963 20002058 -222662295 - MER20 DNA MER1_type -124 95 1 191 261 130 0 chr1 20002705 20002774 -222661579 + MIR SINE MIR 92 169 -93 595 179 0 0 chr1 20002856 20002962 -222661391 + AluJb SINE Alu 120 225 -87 2147 127 0 10 chr1 20003624 20003924 -222660429 + AluY SINE Alu 1 297 -14 1180 165 26 10 chr1 20004006 20004200 -222660153 + AluJo SINE Alu 66 262 -50 945 127 0 0 chr1 20004581 20004707 -222659646 - AluJb SINE Alu -186 126 1 1468 186 10 70 chr1 20005868 20005966 -222658387 + AluJo SINE Alu 1 103 -209 2500 61 3 0 chr1 20005966 20006260 -222658093 + AluY SINE Alu 1 295 -16 1468 186 10 70 chr1 20006260 20006473 -222657880 + AluJo SINE Alu 103 293 -19 209 265 96 12 chr1 20006502 20006585 -222657768 + MIR SINE MIR 65 154 -108 1529 202 3 20 chr1 20007163 20007460 -222656893 + AluJb SINE Alu 1 292 -20 1146 191 38 9 chr1 20008215 20008425 -222655928 - AluJo SINE Alu -96 216 1 2431 68 0 3 chr1 20008793 20009086 -222655267 + AluSg1 SINE Alu 10 301 -8 2561 82 0 0 chr1 20009367 20009673 -222654680 - AluY SINE Alu -5 306 1 324 264 22 11 chr1 20010182 20010273 -222654080 + MLT1G1 LTR MaLR 166 257 -338 930 168 13 0 chr1 20010423 20010572 -222653781 - AluJb SINE Alu -161 151 1 2729 192 23 32 chr1 20010581 20010939 -222653414 - L1MB7 LINE L1 0 6184 5824 231 88 0 0 chr1 20010939 20010973 -222653380 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1564 179 4 11 chr1 20010973 20011246 -222653107 - AluJo SINE Alu -30 282 12 2729 192 23 32 chr1 20011246 20011549 -222652804 - L1MB7 LINE L1 -358 5826 5528 1242 135 36 9 chr1 20011553 20011775 -222652578 + MSTB LTR MaLR 199 426 0 289 323 0 10 chr1 20012300 20012399 -222651954 + MIR SINE MIR 39 136 -126 211 125 38 188 chr1 20012448 20012528 -222651825 - L2 LINE L2 -19 3294 3227 228 289 144 0 chr1 20012636 20012733 -222651620 + MIR SINE MIR 119 229 -33 2107 148 0 3 chr1 20012760 20013070 -222651283 + AluSx SINE Alu 1 309 -3 189 280 140 0 chr1 20014490 20014583 -222649770 - L2 LINE L2 0 3313 3208 216 178 67 0 chr1 20014663 20014708 -222649645 + L2 LINE L2 3221 3268 -4 1837 146 16 39 chr1 20015607 20015812 -222648541 + AluSx SINE Alu 1 198 -114 2622 66 0 0 chr1 20015812 20016117 -222648236 + AluY SINE Alu 1 305 -6 1837 146 16 39 chr1 20016117 20016220 -222648133 + AluSx SINE Alu 198 302 -10 910 144 7 39 chr1 20016280 20016433 -222647920 + AluSg/x SINE Alu 147 294 -18 1703 203 0 0 chr1 20016449 20016749 -222647604 + AluJb SINE Alu 6 305 -7 1853 131 28 21 chr1 20017068 20017359 -222646994 + AluJb SINE Alu 9 301 -11 184 250 16 62 chr1 20017551 20017615 -222646738 - MIR SINE MIR -3 259 199 274 235 0 15 chr1 20019225 20019293 -222645060 + L1MEc LINE L1 1551 1617 -4779 886 158 0 0 chr1 20019315 20019448 -222644905 + FLAM_C SINE Alu 9 141 -2 452 180 0 0 chr1 20019472 20019561 -222644792 + AluJ/FRAM SINE Alu 219 307 -5 1825 183 44 92 chr1 20019562 20019773 -222644580 + L1MEc LINE L1 2181 2400 -3815 2249 107 3 3 chr1 20019773 20020073 -222644280 + AluSp SINE Alu 2 301 -12 1825 183 44 92 chr1 20020073 20020178 -222644175 + L1MEc LINE L1 2400 2508 -3707 1685 186 13 17 chr1 20020178 20020479 -222643874 + AluJo SINE Alu 12 311 -1 1825 183 44 92 chr1 20020479 20020726 -222643627 + L1MEc LINE L1 2508 2765 -3450 2413 78 0 3 chr1 20020726 20021021 -222643332 + AluSg1 SINE Alu 3 296 -13 1825 183 44 92 chr1 20021021 20021163 -222643190 + L1MEc LINE L1 2765 2912 -3303 2161 148 0 0 chr1 20021163 20021467 -222642886 + AluSx SINE Alu 1 304 -8 2255 125 0 6 chr1 20021473 20021786 -222642567 + AluSx SINE Alu 1 311 -1 1825 183 44 92 chr1 20021786 20021862 -222642491 + L1MEc LINE L1 2821 2899 -3316 198 103 0 0 chr1 20021885 20021914 -222642439 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 820 209 84 21 chr1 20021926 20022165 -222642188 + L1MEc LINE L1 2878 3131 -3084 2147 127 3 0 chr1 20022167 20022459 -222641894 - AluSx SINE Alu -14 298 6 1270 206 36 12 chr1 20022466 20022801 -222641552 - L1M4 LINE L1 -843 5303 4961 407 167 0 56 chr1 20022801 20022891 -222641462 - AluJ/FLAM SINE Alu -226 86 2 2134 115 3 19 chr1 20022920 20023233 -222641120 + AluSc SINE Alu 1 308 -1 3880 201 35 28 chr1 20023240 20023594 -222640759 - L1MB7 LINE L1 -5 6179 5829 1545 180 13 27 chr1 20023594 20023894 -222640459 - AluJo SINE Alu -5 307 12 3880 201 35 28 chr1 20023894 20024457 -222639896 - L1MB7 LINE L1 -355 5829 5243 1614 87 18 13 chr1 20024457 20024686 -222639667 - MER30 DNA MER1_type 0 230 1 3880 201 35 28 chr1 20024686 20024882 -222639471 - L1MB7 LINE L1 -941 5243 5050 935 169 34 23 chr1 20024883 20025060 -222639293 - AluSg/x SINE Alu -12 298 120 940 205 61 51 chr1 20025060 20025198 -222639155 - L1MB7 LINE L1 -1102 5044 4909 2473 60 0 0 chr1 20025198 20025513 -222638840 - AluY SINE Alu 0 315 1 940 205 61 51 chr1 20025513 20025666 -222638687 - L1MB7 LINE L1 -1237 4909 4749 1228 113 0 36 chr1 20025669 20025863 -222638490 - AluSg/x SINE Alu 0 312 126 656 198 32 60 chr1 20025863 20025999 -222638354 - L1MB7 LINE L1 -1403 4743 4614 2001 138 10 6 chr1 20025999 20026310 -222638043 + AluSx SINE Alu 1 312 0 656 198 32 60 chr1 20026310 20026390 -222637963 - L1MB7 LINE L1 -1532 4614 4533 * 2178 143 32 5 chr1 20026389 20026768 -222637585 + MSTB-int LTR MaLR 1249 1637 -14 2300 152 24 14 chr1 20026786 20027208 -222637145 + MSTB LTR MaLR 1 426 0 289 323 0 10 chr1 20027731 20027830 -222636523 + MIR SINE MIR 39 136 -126 211 125 38 188 chr1 20027879 20027959 -222636394 - L2 LINE L2 -19 3294 3227 205 309 144 0 chr1 20028067 20028164 -222636189 + MIR SINE MIR 119 229 -33 2058 141 0 13 chr1 20028191 20028497 -222635856 + AluSx SINE Alu 1 302 -10 187 313 146 10 chr1 20029927 20030023 -222634330 - L2 LINE L2 0 3313 3205 216 178 67 0 chr1 20030099 20030144 -222634209 + L2 LINE L2 3221 3268 -4 1854 117 35 17 chr1 20031043 20031359 -222632994 + AluSg SINE Alu 1 310 0 1808 145 14 14 chr1 20031676 20031966 -222632387 + AluJb SINE Alu 9 298 -14 184 250 16 62 chr1 20032150 20032214 -222632139 - MIR SINE MIR -3 259 199 186 171 0 0 chr1 20032912 20032953 -222631400 + GA-rich Low_complexity Low_complexity 3 43 0 289 221 0 15 chr1 20033859 20033927 -222630426 + L1MEc LINE L1 1552 1618 -4778 825 158 0 8 chr1 20033943 20034076 -222630277 + FLAM_C SINE Alu 11 142 -1 423 195 0 0 chr1 20034090 20034177 -222630176 + AluJ/FRAM SINE Alu 219 305 -7 971 219 30 17 chr1 20034178 20034480 -222629873 + L1MEc LINE L1 2181 2486 -3910 1081 237 0 9 chr1 20034502 20034717 -222629636 + AluJo SINE Alu 13 225 -87 1369 208 52 48 chr1 20034744 20035136 -222629217 + L1MEc LINE L1 2433 2830 -3385 2096 134 0 0 chr1 20035136 20035448 -222628905 + AluSx SINE Alu 1 312 0 1369 208 52 48 chr1 20035448 20035516 -222628837 + L1MEc LINE L1 2830 2896 -3319 2418 108 0 6 chr1 20035518 20035852 -222628501 + AluSx SINE Alu 1 332 0 1098 201 60 36 chr1 20035920 20036161 -222628192 + L1MEc LINE L1 2878 3131 -3084 2156 137 3 0 chr1 20036161 20036467 -222627886 - AluSx SINE Alu -5 307 1 1098 201 60 36 chr1 20036467 20036558 -222627795 + L1MEc LINE L1 3131 3218 -2997 729 172 0 0 chr1 20036558 20036692 -222627661 + AluSg/x SINE Alu 179 312 0 1891 220 31 111 chr1 20036692 20037068 -222627285 + L1MEc LINE L1 3227 3631 -2584 2144 126 7 3 chr1 20037068 20037370 -222626983 + AluSx SINE Alu 1 303 -9 1799 163 24 17 chr1 20037376 20037671 -222626682 - AluJo SINE Alu -15 297 1 1891 220 31 111 chr1 20037671 20038216 -222626137 + L1MEc LINE L1 3636 4081 -2134 853 150 15 0 chr1 20038216 20038349 -222626004 + AluJo SINE Alu 1 135 -177 497 183 137 0 chr1 20038351 20038482 -222625871 + L1MEc LINE L1 4067 4215 -2000 1009 150 0 85 chr1 20038484 20038684 -222625669 - AluJb SINE Alu 0 312 130 1287 126 0 0 chr1 20038739 20038914 -222625439 + AluSg/x SINE Alu 134 308 -2 1159 100 5 37 chr1 20038915 20039105 -222625248 - HUERS-P3b LTR ERV1 -5135 2283 2100 * 4595 148 11 19 chr1 20039100 20040275 -222624078 - HUERS-P3b LTR ERV1 -4870 2126 506 952 211 54 5 chr1 20040284 20040488 -222623865 - HUERS-P3b LTR ERV1 -8705 214 1 233 193 18 18 chr1 20040488 20040545 -222623808 - LTR19C LTR ERV1 0 779 723 2507 172 39 79 chr1 20040546 20040862 -222623491 - LTR9 LTR ERV1 0 612 332 2412 109 0 0 chr1 20040862 20041175 -222623178 - AluSq SINE Alu 0 313 1 2507 172 39 79 chr1 20041175 20041479 -222622874 - LTR9 LTR ERV1 -280 332 17 2297 68 4 4 chr1 20041853 20042133 -222622220 - AluSg SINE Alu -12 298 19 1968 175 30 23 chr1 20042584 20043086 -222621267 + MLT2A2 LTR ERVL 1 507 -47 1957 132 14 7 chr1 20043089 20043391 -222620962 - AluSx SINE Alu 0 304 1 230 190 0 86 chr1 20043395 20043453 -222620900 + MLT2C1 LTR ERVL 338 390 -7 2456 67 0 3 chr1 20043797 20044122 -222620231 + AluY SINE Alu 1 324 0 2355 95 0 0 chr1 20044256 20044551 -222619802 - AluSg SINE Alu -15 295 1 303 162 10 50 chr1 20044558 20044657 -222619696 - L1MA8 LINE L1 0 6291 6197 482 271 181 10 chr1 20044895 20045188 -222619165 + MLT1G1 LTR MaLR 94 541 -54 3605 198 59 26 chr1 20045208 20045680 -222618673 - L1MB8 LINE L1 -37 6141 5686 2427 99 0 0 chr1 20045680 20045982 -222618371 - AluSx SINE Alu -10 302 1 3605 198 59 26 chr1 20045982 20046323 -222618030 - L1MB8 LINE L1 -492 5686 5358 2051 142 3 10 chr1 20046323 20046633 -222617720 - AluJb SINE Alu -2 310 3 3605 198 59 26 chr1 20046633 20047331 -222617022 - L1MB8 LINE L1 -820 5358 4569 1869 169 0 7 chr1 20047335 20047631 -222616722 - AluJb SINE Alu -13 299 6 743 201 0 0 chr1 20047795 20047939 -222616414 + AluJb SINE Alu 168 311 -1 1789 164 7 17 chr1 20049297 20049596 -222614757 + AluJo SINE Alu 1 296 -16 821 75 0 0 chr1 20049719 20049825 -222614528 - U6 snRNA snRNA 0 107 2 1559 210 7 10 chr1 20049969 20050274 -222614079 - AluJb SINE Alu 0 312 9 190 219 0 0 chr1 20050398 20050439 -222613914 + MIR SINE MIR 114 154 -108 1697 158 38 31 chr1 20051083 20051375 -222612978 - AluJb SINE Alu -18 294 1 477 285 27 12 chr1 20053290 20053463 -222610890 + MIR SINE MIR 20 205 -57 280 308 73 59 chr1 20053473 20053746 -222610607 - L2 LINE L2 -1 3271 2995 585 209 22 58 chr1 20054280 20054419 -222609934 + AluJo SINE Alu 3 136 -176 2411 103 0 3 chr1 20054436 20054747 -222609606 + AluSx SINE Alu 1 310 -2 1987 120 92 0 chr1 20055059 20055342 -222609011 + AluSx SINE Alu 1 309 -3 346 250 19 19 chr1 20057709 20057813 -222606540 - MIR SINE MIR -33 229 126 197 258 11 0 chr1 20057944 20058037 -222606316 + CT-rich Low_complexity Low_complexity 1 94 0 192 295 126 11 chr1 20058545 20058640 -222605713 + MER5A DNA MER1_type 7 112 -77 237 309 183 0 chr1 20059210 20059336 -222605017 - MIR SINE MIR -34 228 80 211 244 89 33 chr1 20059300 20059390 -222604963 + MIR SINE MIR 90 184 -78 * 184 29 29 29 chr1 20059539 20059573 -222604780 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2125 101 4 4 chr1 20059576 20059852 -222604501 - AluSx SINE Alu -36 276 1 300 91 0 0 chr1 20060352 20060396 -222603957 + (TC)n Simple_repeat Simple_repeat 1 44 0 291 313 159 0 chr1 20060448 20060630 -222603723 + MIR SINE MIR 4 214 -48 369 0 0 0 chr1 20060997 20061038 -222603315 + (TG)n Simple_repeat Simple_repeat 2 42 0 1492 144 39 27 chr1 20061038 20061295 -222603058 - AluJb SINE Alu -22 290 31 1045 182 0 0 chr1 20061310 20061491 -222602862 - AluJb SINE Alu -12 300 120 245 98 24 0 chr1 20061491 20061532 -222602821 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 758 129 0 58 chr1 20061555 20061694 -222602659 - FLAM_C SINE Alu -2 141 11 540 288 41 12 chr1 20061835 20062005 -222602348 - MIR SINE MIR -39 223 49 840 248 5 20 chr1 20062694 20062892 -222601461 - MIR SINE MIR -9 253 59 198 240 20 20 chr1 20062914 20062964 -222601389 - L2 LINE L2 -85 3187 3138 353 255 49 0 chr1 20063042 20063144 -222601209 + MIR SINE MIR 86 192 -70 940 103 0 22 chr1 20063309 20063445 -222600908 + FLAM_C SINE Alu 1 133 0 180 271 41 82 chr1 20063475 20063597 -222600756 - L2 LINE L2 -234 3038 2922 3533 167 25 32 chr1 20063765 20064249 -222600104 - L1MB7 LINE L1 -9 6175 5696 1966 134 0 16 chr1 20064249 20064265 -222600088 - AluJb SINE Alu -3 309 294 1926 128 0 3 chr1 20064265 20064547 -222599806 + AluSx SINE Alu 2 282 -30 1966 134 0 16 chr1 20064547 20064844 -222599509 - AluJb SINE Alu -18 294 1 3533 167 25 32 chr1 20064844 20065048 -222599305 - L1MB7 LINE L1 -488 5696 5492 2430 49 13 7 chr1 20065054 20065358 -222598995 - AluY SINE Alu -5 306 1 2144 119 0 0 chr1 20065362 20065656 -222598697 - AluSx SINE Alu -18 294 1 1174 205 76 6 chr1 20065656 20065806 -222598547 - L1MB7 LINE L1 -943 5203 5065 1683 188 6 19 chr1 20065806 20066120 -222598233 - AluJo SINE Alu -1 311 2 1174 205 76 6 chr1 20066120 20066211 -222598142 - L1MB7 LINE L1 -1081 5065 4982 2074 133 0 0 chr1 20066211 20066504 -222597849 - AluSx SINE Alu -13 299 7 1174 205 76 6 chr1 20066504 20066578 -222597775 - L1MB7 LINE L1 -1164 4982 4865 278 270 90 45 chr1 20066595 20066706 -222597647 - L2 LINE L2 -20 3293 3178 1798 158 13 28 chr1 20067505 20067822 -222596531 - AluJo SINE Alu 0 312 1 240 195 0 0 chr1 20067823 20067864 -222596489 - Alu SINE Alu -261 42 2 2154 128 0 3 chr1 20068039 20068351 -222596002 - AluSx SINE Alu -1 311 1 211 246 43 29 chr1 20068543 20068612 -222595741 + MIR SINE MIR 165 234 -28 397 237 31 0 chr1 20069563 20069660 -222594693 + MIR3 SINE MIR 85 184 -24 342 292 6 45 chr1 20069965 20070127 -222594226 - MIR SINE MIR -72 136 17 244 337 21 0 chr1 20070465 20070560 -222593793 - L2 LINE L2 -6 3266 3170 568 254 29 7 chr1 20070689 20070827 -222593526 - MIR SINE MIR -72 190 50 248 233 142 33 chr1 20071332 20071452 -222592901 + MIR3 SINE MIR 13 145 -63 309 149 0 0 chr1 20072133 20072200 -222592153 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 300 335 149 27 chr1 20072217 20072513 -222591840 - L2 LINE L2 -25 3288 2957 449 258 77 45 chr1 20072534 20072757 -222591596 + MIR SINE MIR 17 256 -6 2207 123 0 0 chr1 20073618 20073919 -222590434 + AluSx SINE Alu 1 301 -11 369 295 58 7 chr1 20074255 20074394 -222589959 + MIR SINE MIR 111 256 -6 21 0 0 0 chr1 20074629 20074650 -222589703 + AT_rich Low_complexity Low_complexity 1 21 0 805 136 8 0 chr1 20074650 20074775 -222589578 - FRAM SINE Alu -51 125 1 219 289 311 21 chr1 20075074 20075309 -222589044 - L2 LINE L2 -49 3223 2921 256 344 31 68 chr1 20075567 20075658 -222588695 - MIR SINE MIR -14 248 164 2294 81 7 0 chr1 20075658 20075953 -222588400 - AluSx SINE Alu -15 297 1 256 344 31 68 chr1 20075953 20076024 -222588329 - MIR SINE MIR -98 164 92 301 311 155 36 chr1 20076841 20077060 -222587293 + MIR SINE MIR 14 258 -4 966 125 0 0 chr1 20077131 20077267 -222587086 + AluJ SINE Alu 1 136 -176 1435 119 123 16 chr1 20077854 20078105 -222586248 - AluJb SINE Alu -13 299 22 813 169 30 2 chr1 20078313 20078583 -222585770 + AluJb SINE Alu 1 322 0 186 204 20 41 chr1 20078725 20078774 -222585579 + MIR SINE MIR 213 260 -2 212 234 325 0 chr1 20078799 20078876 -222585477 + L2 LINE L2 3171 3272 0 366 158 40 26 chr1 20078941 20079017 -222585336 + L1MB8 LINE L1 6102 6178 0 2006 131 10 0 chr1 20079188 20079485 -222584868 - AluSx SINE Alu -12 300 1 871 160 69 0 chr1 20079793 20079937 -222584416 + FRAM SINE Alu 2 155 -11 2243 116 0 0 chr1 20079937 20080247 -222584106 + AluSg SINE Alu 1 310 0 1931 141 0 10 chr1 20080720 20081017 -222583336 + AluSx SINE Alu 1 294 -18 889 137 8 0 chr1 20081035 20081166 -222583187 + FLAM_C SINE Alu 1 132 -1 524 305 74 27 chr1 20081310 20081608 -222582745 - L1MCb LINE L1 -5692 353 42 1863 146 100 10 chr1 20081618 20081754 -222582599 + MER31A LTR ERV1 1 123 -362 1766 157 42 0 chr1 20081754 20082040 -222582313 - AluJb SINE Alu -14 298 1 1863 146 100 10 chr1 20082040 20082314 -222582039 + MER31A LTR ERV1 123 448 -37 2103 84 35 0 chr1 20082641 20082925 -222581428 + AluSp SINE Alu 1 294 -19 189 272 25 49 chr1 20085112 20085193 -222579160 - MIR SINE MIR -41 221 143 916 107 0 0 chr1 20085193 20085314 -222579039 + FLAM_C SINE Alu 1 121 -22 240 114 0 44 chr1 20085359 20085404 -222578949 - MIR SINE MIR -63 145 107 195 231 29 106 chr1 20088200 20088304 -222576049 - MIR3 SINE MIR -110 98 3 361 264 21 15 chr1 20088874 20088991 -222575362 - MIR SINE MIR -72 136 21 234 268 59 9 chr1 20090410 20090520 -222573833 - MIR SINE MIR -79 129 12 316 335 55 82 chr1 20090848 20091141 -222573212 + L1ME LINE L1 748 1032 -5038 2222 97 0 52 chr1 20091454 20091784 -222572569 - AluSq SINE Alu 0 313 1 279 369 102 19 chr1 20091791 20091997 -222572356 + L3 LINE CR1 181 403 -1174 445 350 54 27 chr1 20092552 20092812 -222571541 + L3 LINE CR1 801 1067 -510 237 347 0 0 chr1 20092833 20092905 -222571448 + L3 LINE CR1 1021 1092 -485 485 197 172 25 chr1 20092905 20093027 -222571326 - FLAM_A SINE Alu -2 140 1 233 305 24 113 chr1 20093075 20093288 -222571065 + L3 LINE CR1 1153 1346 -231 1825 156 7 10 chr1 20095256 20095558 -222568795 - AluJb SINE Alu -10 302 2 2322 94 0 0 chr1 20095624 20095921 -222568432 - AluSg SINE Alu -10 300 4 1280 190 20 63 chr1 20095932 20096232 -222568121 - AluJo SINE Alu 0 312 26 278 325 32 16 chr1 20096259 20096382 -222567971 - MIR3 SINE MIR -83 125 1 255 243 189 61 chr1 20098220 20098368 -222565985 + L2 LINE L2 2579 2745 -569 374 255 41 0 chr1 20098746 20098844 -222565509 + MIR SINE MIR 48 149 -113 2403 80 0 3 chr1 20099855 20100156 -222564197 + AluSx SINE Alu 1 300 -12 375 226 212 14 chr1 20100722 20100868 -222563485 - MER5A DNA MER1_type -6 183 9 184 216 0 0 chr1 20101153 20101190 -222563163 + L3 LINE CR1 520 556 -1021 2088 109 0 20 chr1 20101505 20101808 -222562545 - AluSx SINE Alu -15 297 1 239 281 39 26 chr1 20102398 20102498 -222561855 + MIR SINE MIR 30 131 -77 2137 129 7 0 chr1 20102779 20103081 -222561272 - AluSx SINE Alu -8 304 1 237 221 15 134 chr1 20103747 20103927 -222560426 + L1MD3 LINE L1 7891 7995 0 432 290 152 38 chr1 20105565 20105841 -222558512 - L1ME4a LINE L1 -69 6052 5746 310 75 38 0 chr1 20106829 20106882 -222557471 - Alu SINE Alu -2 300 246 1773 128 57 4 chr1 20106882 20107163 -222557190 - AluSg SINE Alu -14 296 1 706 154 98 0 chr1 20107194 20107317 -222557036 + FLAM_C SINE Alu 3 137 -6 1307 143 0 63 chr1 20107727 20107964 -222556389 - AluJo SINE Alu -14 298 77 301 306 0 24 chr1 20108848 20108933 -222555420 + MIR3 SINE MIR 125 207 -1 825 318 157 36 chr1 20108976 20109478 -222554875 - L3 LINE CR1 -89 1488 879 2013 152 10 0 chr1 20109478 20109787 -222554566 - AluJo SINE Alu 0 312 1 825 318 157 36 chr1 20109787 20109972 -222554381 - L3 LINE CR1 -698 879 718 2477 84 0 10 chr1 20110192 20110504 -222553849 + AluSp SINE Alu 1 307 -6 868 126 8 8 chr1 20110808 20110927 -222553426 + FLAM_C SINE Alu 1 122 -180 246 32 0 0 chr1 20110927 20110958 -222553395 + (TA)n Simple_repeat Simple_repeat 1 31 0 2241 131 3 0 chr1 20111050 20111362 -222552991 + AluSq SINE Alu 1 313 0 362 291 50 7 chr1 20112731 20112872 -222551481 - MIR SINE MIR -114 148 2 788 94 0 107 chr1 20113005 20113154 -222551199 + FLAM_C SINE Alu 1 133 0 824 184 12 12 chr1 20113307 20113470 -222550883 - FRAM SINE Alu 0 166 4 1816 236 75 2 chr1 20114908 20115426 -222548927 - MER68 LTR ERV1 0 562 7 213 353 183 4 chr1 20115459 20115694 -222548659 + L2 LINE L2 3027 3303 -10 244 330 28 0 chr1 20116123 20116229 -222548124 - MIR SINE MIR -126 136 28 1483 158 18 49 chr1 20118318 20118603 -222545750 - AluJo SINE Alu 0 312 37 301 243 116 46 chr1 20120372 20120531 -222543822 + MIR SINE MIR 18 191 -65 332 384 41 0 chr1 20121331 20121477 -222542876 + L2 LINE L2 3162 3313 0 535 245 77 13 chr1 20121484 20121639 -222542714 + MIR SINE MIR 28 192 -70 400 306 46 20 chr1 20121958 20122131 -222542222 + MIR SINE MIR 34 211 -51 455 181 105 23 chr1 20122179 20122312 -222542041 + MER58C DNA MER1_type 67 210 -5 343 285 185 20 chr1 20122662 20122869 -222541484 + MIR SINE MIR 9 241 -21 490 313 52 13 chr1 20123465 20123695 -222540658 + MIR SINE MIR 21 259 -3 2350 119 0 0 chr1 20123731 20124043 -222540310 - AluSx SINE Alu 0 312 1 756 239 12 6 chr1 20125229 20125396 -222538957 + MER3 DNA MER1_type 5 125 -84 305 260 19 29 chr1 20125401 20125505 -222538848 + L2 LINE L2 3191 3293 -20 2320 103 0 3 chr1 20125532 20125834 -222538519 + AluSg SINE Alu 1 301 -9 345 200 31 0 chr1 20126229 20126294 -222538059 - AluJ/FRAM SINE Alu -15 287 221 1005 83 0 8 chr1 20126329 20126461 -222537892 - AluSg/x SINE Alu -4 308 178 907 192 65 16 chr1 20126726 20126971 -222537382 + L1M4 LINE L1 4674 4930 -1216 1397 164 0 94 chr1 20126973 20127150 -222537203 - AluJo SINE Alu -3 309 170 2058 134 3 7 chr1 20127150 20127448 -222536905 - AluJb SINE Alu -7 305 9 1397 164 0 94 chr1 20127448 20127569 -222536784 - AluJo SINE Alu -142 170 39 891 186 63 8 chr1 20127570 20127822 -222536531 + L1M4 LINE L1 4932 5197 -949 2092 143 3 0 chr1 20128493 20128793 -222535560 - AluJo SINE Alu -10 302 2 809 255 174 24 chr1 20128921 20129219 -222535134 + MLT1J2 LTR MaLR 97 439 -11 2262 72 44 17 chr1 20129305 20129598 -222534755 + AluY SINE Alu 1 301 -10 2078 137 0 7 chr1 20130243 20130254 -222534099 - AluSq SINE Alu -15 298 288 351 0 0 0 chr1 20130254 20130293 -222534060 + (TG)n Simple_repeat Simple_repeat 2 40 0 2078 137 0 7 chr1 20130293 20130581 -222533772 - AluSq SINE Alu -25 288 1 2059 149 0 3 chr1 20130581 20130883 -222533470 - AluSq SINE Alu -12 301 1 493 163 225 4 chr1 20130885 20131034 -222533319 + MSTA LTR MaLR 177 360 -68 918 191 12 0 chr1 20131037 20131199 -222533154 + LOR1-int LTR ERV1 5490 5653 -2467 434 107 0 27 chr1 20131201 20131276 -222533077 + LTR8A LTR ERV1 386 458 -269 264 283 92 64 chr1 20131435 20131608 -222532745 - L2 LINE L2 0 3313 3136 721 254 33 47 chr1 20132461 20132745 -222531608 + MLT1G1 LTR MaLR 5 264 -291 642 211 37 43 chr1 20132771 20132984 -222531369 + MLT1F1 LTR MaLR 395 567 0 262 211 0 67 chr1 20134216 20134236 -222530117 - L1MB4 LINE L1 -28 6152 6132 2180 107 6 49 chr1 20134236 20134562 -222529791 + AluSx SINE Alu 1 312 0 262 211 0 67 chr1 20134562 20134631 -222529722 - L1MB4 LINE L1 -48 6132 6069 721 133 210 56 chr1 20137291 20137486 -222526867 + MER46A DNA MER2_type 1 225 -11 2453 60 0 66 chr1 20137533 20137866 -222526487 + AluY SINE Alu 1 311 0 1573 148 130 4 chr1 20137918 20138188 -222526165 + AluJo SINE Alu 9 312 0 1833 181 3 13 chr1 20138276 20138579 -222525774 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 20138597 20138619 -222525734 + AT_rich Low_complexity Low_complexity 1 22 0 334 253 85 3 chr1 20138754 20138884 -222525469 - MIR SINE MIR -61 147 42 195 313 21 21 chr1 20141276 20141372 -222522981 + L2 LINE L2 3016 3111 -161 789 164 0 8 chr1 20141433 20141567 -222522786 + FLAM_C SINE Alu 1 133 0 2208 135 0 3 chr1 20141600 20141903 -222522450 + AluSx SINE Alu 1 302 -10 328 151 0 0 chr1 20141938 20141991 -222522362 + AluJ/FRAM SINE Alu 221 273 -29 809 268 153 6 chr1 20142061 20142401 -222521952 + L2 LINE L2 2181 2570 -744 273 306 87 50 chr1 20142893 20143040 -222521313 - MIR SINE MIR -65 143 16 297 232 152 0 chr1 20143238 20143337 -222521016 + L2 LINE L2 2992 3105 -167 207 290 87 0 chr1 20143643 20143712 -222520641 + L2 LINE L2 3183 3257 -56 218 260 0 0 chr1 20143764 20143814 -222520539 + GA-rich Low_complexity Low_complexity 4 53 0 332 311 92 19 chr1 20145491 20145697 -222518656 - MIR SINE MIR -22 240 20 397 267 16 96 chr1 20146115 20146302 -222518051 + MIR SINE MIR 59 230 -32 553 279 89 6 chr1 20146646 20146825 -222517528 + L2 LINE L2 3119 3312 -1 290 304 0 0 chr1 20147129 20147198 -222517155 + MIR SINE MIR 31 99 -109 374 235 102 0 chr1 20147761 20147859 -222516494 + MER53 DNA DNA 1 108 -81 2290 95 3 10 chr1 20147866 20148162 -222516191 - AluY SINE Alu -17 294 1 270 362 54 7 chr1 20149276 20149425 -222514928 - MIR SINE MIR -29 233 78 2095 144 7 7 chr1 20150337 20150643 -222513710 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr1 20150961 20150984 -222513369 + AT_rich Low_complexity Low_complexity 1 23 0 1433 173 0 21 chr1 20150994 20151237 -222513116 + AluJb SINE Alu 55 292 -20 459 244 184 35 chr1 20151690 20151891 -222512462 + MIR SINE MIR 14 244 -18 313 248 305 0 chr1 20151957 20152098 -222512255 - MIR SINE MIR -27 235 52 285 287 258 0 chr1 20153384 20153551 -222510802 - MIR SINE MIR -3 259 50 276 298 169 0 chr1 20153795 20153919 -222510434 - MIR3 SINE MIR -32 176 32 275 156 0 0 chr1 20154251 20154296 -222510057 + MER103 DNA DNA 55 99 -67 386 258 168 26 chr1 20154671 20154826 -222509527 + MIR SINE MIR 12 188 -74 611 139 0 146 chr1 20156169 20156306 -222508047 + FLAM_C SINE Alu 2 118 -25 1433 155 4 42 chr1 20156934 20157198 -222507155 + AluJo SINE Alu 57 310 -2 1882 181 3 0 chr1 20158165 20158475 -222505878 + AluSx SINE Alu 2 312 0 395 253 116 16 chr1 20158490 20158680 -222505673 + MER102a DNA MER1_type 97 305 -25 1011 226 88 25 chr1 20159338 20159656 -222504697 + Charlie1 DNA MER1_type 775 1112 -1649 1678 177 3 48 chr1 20160730 20161040 -222503313 - AluJb SINE Alu -16 296 1 22 0 0 0 chr1 20161146 20161168 -222503185 + AT_rich Low_complexity Low_complexity 1 22 0 428 309 149 0 chr1 20161991 20162192 -222502161 + MIR SINE MIR 29 259 -3 946 170 33 6 chr1 20162490 20162672 -222501681 + MER20 DNA MER1_type 33 219 0 1939 51 42 4 chr1 20162798 20163071 -222501282 + AluY SINE Alu 35 316 0 2037 153 0 10 chr1 20163823 20164001 -222500352 - AluJo SINE Alu -1 311 136 1803 147 42 3 chr1 20164001 20164286 -222500067 - AluJb SINE Alu -16 296 1 2037 153 0 10 chr1 20164286 20164421 -222499932 - AluJo SINE Alu -176 136 1 1641 111 0 0 chr1 20164693 20164909 -222499444 + 7SLRNA srpRNA srpRNA 1 216 -104 325 279 221 0 chr1 20164925 20165061 -222499292 + MIR3 SINE MIR 16 181 -27 22 0 0 0 chr1 20165929 20165951 -222498402 + GC_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr1 20165960 20166000 -222498353 + GC_rich Low_complexity Low_complexity 1 40 0 201 108 0 0 chr1 20166095 20166132 -222498221 + (CGCGG)n Simple_repeat Simple_repeat 5 41 0 231 114 0 0 chr1 20166369 20166404 -222497949 + (CAGCC)n Simple_repeat Simple_repeat 5 39 0 341 208 78 0 chr1 20166524 20166601 -222497752 - L2 LINE L2 -19 3294 3212 2374 60 25 0 chr1 20166667 20166952 -222497401 + AluSc SINE Alu 1 292 -17 183 100 0 0 chr1 20167057 20167087 -222497266 + (TC)n Simple_repeat Simple_repeat 1 30 0 501 289 52 0 chr1 20167380 20167515 -222496838 - L2 LINE L2 -11 3302 3161 993 101 22 7 chr1 20167525 20167663 -222496690 + AluSq/x SINE Alu 1 140 -173 2520 45 3 0 chr1 20167664 20167954 -222496399 + AluY SINE Alu 1 291 -20 520 251 114 132 chr1 20168018 20168618 -222495735 - L2 LINE L2 -254 3059 2450 1932 123 22 51 chr1 20168618 20168934 -222495419 - AluJo SINE Alu -5 307 1 1919 140 71 14 chr1 20168935 20169299 -222495054 - L1MC1 LINE L1 -9 6324 5940 520 251 114 132 chr1 20169299 20169368 -222494985 - L2 LINE L2 -862 2451 2385 2589 71 0 0 chr1 20169482 20169793 -222494560 + AluY SINE Alu 1 311 0 2401 92 0 3 chr1 20170429 20170732 -222493621 + AluSx SINE Alu 1 302 -10 226 267 53 0 chr1 20171067 20171142 -222493211 + L1MC5 LINE L1 7800 7878 -83 2063 129 0 28 chr1 20171808 20172125 -222492228 + AluJo SINE Alu 1 308 -4 195 42 0 0 chr1 20172308 20172332 -222492021 + (TTG)n Simple_repeat Simple_repeat 2 25 0 210 281 0 0 chr1 20172404 20172461 -222491892 - MIR SINE MIR -121 141 85 1516 96 0 0 chr1 20172679 20172876 -222491477 + AluSg/x SINE Alu 99 295 -15 2263 128 0 0 chr1 20173440 20173746 -222490607 - AluSx SINE Alu -6 306 1 371 284 106 15 chr1 20173766 20173971 -222490382 + L1ME4a LINE L1 5676 5896 -225 248 248 18 53 chr1 20174000 20174113 -222490240 + L1ME4a LINE L1 5968 6076 -45 240 250 177 21 chr1 20174144 20174240 -222490113 - L1ME4a LINE L1 -1 6120 6010 766 206 126 32 chr1 20174343 20174590 -222489763 + L1MB8 LINE L1 5909 6178 0 301 248 165 16 chr1 20175179 20175300 -222489053 + L1ME4a LINE L1 5544 5682 -439 331 247 78 65 chr1 20175443 20175597 -222488756 + L1ME4a LINE L1 5931 6086 -35 216 0 0 0 chr1 20175977 20176001 -222488352 + (T)n Simple_repeat Simple_repeat 1 24 0 1501 101 0 68 chr1 20176020 20176239 -222488114 - AluSx SINE Alu -108 204 1 2011 149 14 0 chr1 20178210 20178505 -222485848 + AluSx SINE Alu 1 299 -13 261 146 0 0 chr1 20178505 20178553 -222485800 + (GA)n Simple_repeat Simple_repeat 1 48 0 1992 162 0 9 chr1 20178563 20178878 -222485475 + AluJo SINE Alu 1 312 0 1374 159 13 25 chr1 20178933 20179172 -222485181 - MER46A DNA MER2_type 0 236 1 774 254 97 0 chr1 20179178 20179363 -222484990 - MIR SINE MIR -32 230 28 193 259 0 52 chr1 20180552 20180610 -222483743 - L2 LINE L2 -2 3270 3216 23 33 0 0 chr1 20180646 20180676 -222483677 + AT_rich Low_complexity Low_complexity 1 30 0 304 363 24 8 chr1 20181021 20181145 -222483208 + L2 LINE L2 3172 3297 -16 2191 135 0 3 chr1 20181497 20181808 -222482545 - AluSx SINE Alu -2 310 1 2285 113 3 0 chr1 20181953 20182264 -222482089 - AluSx SINE Alu 0 312 1 380 258 295 11 chr1 20182516 20182706 -222481647 - MIR SINE MIR -3 259 16 384 311 36 36 chr1 20183217 20183384 -222480969 - MIR SINE MIR -56 206 40 2070 142 7 0 chr1 20184619 20184915 -222479438 - AluSx SINE Alu -14 298 1 325 328 107 20 chr1 20186262 20186506 -222477847 + L1ME LINE L1 5384 5648 -473 424 200 0 0 chr1 20186883 20186963 -222477390 + MER116 DNA Mariner 1 80 0 2403 85 0 13 chr1 20187042 20187359 -222476994 - AluSq SINE Alu 0 313 1 3289 148 58 0 chr1 20188379 20188947 -222475406 + Tigger7 DNA MER2_type 9 609 -1878 2471 73 3 0 chr1 20189076 20189378 -222474975 - AluY SINE Alu -6 305 3 731 141 31 16 chr1 20189380 20189508 -222474845 - FLAM_C SINE Alu -3 140 11 427 176 0 0 chr1 20189521 20189595 -222474758 + Tigger7 DNA MER2_type 2414 2487 0 21 36 0 0 chr1 20189892 20189920 -222474433 + GC_rich Low_complexity Low_complexity 1 28 0 286 286 0 44 chr1 20189996 20190087 -222474266 - MIR SINE MIR -143 119 33 421 300 61 77 chr1 20190529 20190776 -222473577 + MIR SINE MIR 20 262 0 938 136 41 7 chr1 20190825 20190972 -222473381 + FAM SINE Alu 21 172 -13 2614 57 0 19 chr1 20190976 20191292 -222473061 + AluY SINE Alu 1 310 -1 270 161 54 0 chr1 20191293 20191349 -222473004 - MIR3 SINE MIR -46 162 104 886 172 31 0 chr1 20191653 20191816 -222472537 - MER3 DNA MER1_type -86 123 3 405 177 0 13 chr1 20242229 20242308 -222422045 + MER116 DNA Mariner 3 80 0 2428 85 0 13 chr1 20242387 20242704 -222421649 - AluSq SINE Alu 0 313 1 2091 142 0 3 chr1 20242704 20243006 -222421347 - AluSq SINE Alu -12 301 1 478 163 225 4 chr1 20243008 20243157 -222421196 + MSTA LTR MaLR 177 360 -68 905 191 12 0 chr1 20243160 20243322 -222421031 + LOR1-int LTR ERV1 5490 5653 -2467 1272 170 28 25 chr1 20243324 20243607 -222420746 + LTR8A LTR ERV1 386 669 -58 2187 133 10 0 chr1 20243697 20244006 -222420347 + AluSx SINE Alu 1 312 0 1989 123 0 11 chr1 20244014 20244283 -222420070 + AluSx SINE Alu 2 267 -45 439 314 63 0 chr1 20244425 20244600 -222419753 + MIR SINE MIR 12 197 -65 2461 82 0 0 chr1 20244604 20244898 -222419455 + AluSg SINE Alu 1 294 -16 2169 137 0 19 chr1 20244915 20245230 -222419123 + AluJb SINE Alu 1 309 -3 827 138 8 0 chr1 20246603 20246726 -222417627 - FLAM_C SINE Alu -7 136 13 1514 151 0 4 chr1 20247078 20247303 -222417050 + AluJb SINE Alu 89 312 0 432 218 73 24 chr1 20247496 20247620 -222416733 - LTR67 LTR ERVL 0 557 428 243 206 10 155 chr1 20247666 20247696 -222416657 + MER91C DNA MER1_type 36 69 -71 419 142 92 231 chr1 20247696 20247765 -222416588 + MER58A DNA MER1_type 1 78 -2342 2229 125 0 22 chr1 20247765 20248084 -222416269 + AluSx SINE Alu 1 312 0 419 142 92 231 chr1 20248084 20248274 -222416079 + MER58A DNA MER1_type 78 224 0 243 206 10 155 chr1 20248274 20248340 -222416013 + MER91C DNA MER1_type 69 118 -22 4752 166 69 33 chr1 20248761 20249795 -222414558 - MER11C LTR ERVK 0 1071 1 563 197 6 109 chr1 20249805 20249988 -222414365 + L2 LINE L2 2538 2701 -613 500 59 15 0 chr1 20250021 20250089 -222414264 - MSTA LTR MaLR 0 428 360 1862 161 3 0 chr1 20250091 20250376 -222413977 + AluSx SINE Alu 5 290 -22 321 328 107 20 chr1 20250622 20250866 -222413487 - L1ME LINE L1 -473 5648 5384 2070 142 7 0 chr1 20252213 20252509 -222411844 + AluSx SINE Alu 1 298 -14 31 179 0 0 chr1 20253496 20253552 -222410801 + GC_rich Low_complexity Low_complexity 1 56 0 1112 159 44 9 chr1 20253619 20253845 -222410508 - MSTA LTR MaLR -160 268 35 1996 99 51 0 chr1 20253845 20254118 -222410235 + AluSx SINE Alu 1 287 -25 1299 258 120 2 chr1 20254130 20254673 -222409680 + L2 LINE L2 2691 3311 -2 1011 158 6 6 chr1 20254952 20255116 -222409237 - AluJo/FRAM SINE Alu -2 300 137 1915 89 3 98 chr1 20255119 20255468 -222408885 - AluSx SINE Alu 0 302 1 356 314 95 0 chr1 20255487 20255592 -222408761 - L2 LINE L2 -5 3267 3153 896 176 0 0 chr1 20255686 20255828 -222408525 + FLAM_C SINE Alu 1 142 -1 2436 107 0 0 chr1 20255849 20256158 -222408195 + AluSx SINE Alu 1 309 -3 1991 98 4 11 chr1 20256286 20256587 -222407766 + AluSx SINE Alu 19 317 0 190 94 57 75 chr1 20256590 20256643 -222407710 - L2 LINE L2 -4 3309 3258 1906 155 3 13 chr1 20256869 20257172 -222407181 - AluJb SINE Alu -12 300 1 625 206 75 0 chr1 20257274 20257420 -222406933 + MER2 DNA MER2_type 1 157 -188 524 145 0 0 chr1 20257440 20257516 -222406837 - FRAM/FAM SINE Alu -95 81 6 566 49 37 0 chr1 20257519 20257601 -222406752 + MER2 DNA MER2_type 122 206 -139 276 111 0 0 chr1 20257698 20257743 -222406610 + (TG)n Simple_repeat Simple_repeat 2 46 0 740 229 0 7 chr1 20258097 20258241 -222406112 - AluSq/x SINE Alu -168 144 2 1485 120 214 13 chr1 20258244 20258552 -222405801 - MSTA LTR MaLR -57 371 2 680 160 66 0 chr1 20258552 20258658 -222405695 - FLAM_C SINE Alu -28 115 3 1387 191 32 12 chr1 20259123 20259374 -222404979 + AluJo SINE Alu 1 256 -56 2609 87 34 11 chr1 20259444 20259800 -222404553 - THE1B LTR MaLR 0 364 1 384 311 36 36 chr1 20260382 20260549 -222403804 + MIR SINE MIR 40 206 -56 380 258 295 11 chr1 20261060 20261250 -222403103 + MIR SINE MIR 16 259 -3 2285 113 3 0 chr1 20261502 20261813 -222402540 + AluSx SINE Alu 1 312 0 192 267 217 17 chr1 20261837 20261957 -222402396 - L2 LINE L2 -489 2825 2682 1880 148 0 0 chr1 20261958 20262228 -222402125 + AluSx SINE Alu 1 270 -42 314 288 82 60 chr1 20262735 20262919 -222401434 + L2 LINE L2 2615 2802 -512 242 287 176 80 chr1 20263010 20263198 -222401155 + L2 LINE L2 3044 3249 -23 535 197 181 48 chr1 20263329 20263517 -222400836 + MIR SINE MIR 2 214 -48 721 132 0 0 chr1 20263588 20263694 -222400659 - AluSg/x SINE Alu -8 302 197 485 219 169 0 chr1 20264475 20264635 -222399718 - MIR SINE MIR -74 188 2 187 163 82 20 chr1 20264800 20264849 -222399504 - L2 LINE L2 0 3313 3262 2433 88 0 0 chr1 20265049 20265345 -222399008 + AluSq SINE Alu 1 296 -17 1602 184 0 11 chr1 20266188 20266455 -222397898 + AluJb SINE Alu 22 285 -27 1931 118 0 4 chr1 20266474 20266728 -222397625 - AluSx SINE Alu -59 253 1 227 91 0 23 chr1 20266737 20266781 -222397572 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 890 206 0 13 chr1 20266783 20266938 -222397415 - FAM SINE Alu -27 158 6 1491 161 4 4 chr1 20266985 20267221 -222397132 - AluJo SINE Alu -76 236 1 1516 96 0 0 chr1 20267397 20267594 -222396759 - AluSg/x SINE Alu -15 297 101 210 281 0 0 chr1 20267812 20267869 -222396484 + MIR SINE MIR 85 141 -121 195 42 0 0 chr1 20267941 20267965 -222396388 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2063 129 0 28 chr1 20268148 20268465 -222395888 - AluJo SINE Alu -4 308 1 226 267 53 0 chr1 20269131 20269206 -222395147 - L1MC5 LINE L1 -83 7878 7800 2373 89 0 3 chr1 20269541 20269844 -222394509 - AluSx SINE Alu -10 302 1 313 145 48 0 chr1 20270293 20270355 -222393998 + MSTA LTR MaLR 364 428 0 2032 128 47 0 chr1 20270439 20270736 -222393617 - AluJb SINE Alu -1 311 1 2159 43 85 0 chr1 20271087 20271345 -222393008 - AluY SINE Alu -29 282 3 2268 120 0 0 chr1 20271348 20271657 -222392696 - AluSg1 SINE Alu 0 309 1 2348 72 7 3 chr1 20272218 20272510 -222391843 + AluSq SINE Alu 1 293 -20 1277 166 0 19 chr1 20272668 20272873 -222391480 - AluJb SINE Alu -2 310 110 1073 113 14 0 chr1 20272912 20273054 -222391299 + AluSq/x SINE Alu 1 144 -168 350 212 82 88 chr1 20273330 20273500 -222390853 + L1ME4a LINE L1 5724 5892 -229 2242 110 0 10 chr1 20273520 20273821 -222390532 - AluSx SINE Alu -14 298 1 951 201 6 11 chr1 20273829 20274008 -222390345 - AluJo SINE Alu 0 312 135 887 146 0 29 chr1 20274138 20274275 -222390078 - AluJo SINE Alu -169 133 1 340 233 97 19 chr1 20274334 20274437 -222389916 + L1ME4a LINE L1 5818 5928 -193 1236 198 74 7 chr1 20274480 20274763 -222389590 - MLT2D LTR ERVL -20 394 93 341 237 30 38 chr1 20274802 20274933 -222389420 + L1MC5 LINE L1 7268 7397 -564 2362 88 3 0 chr1 20274934 20275230 -222389123 + AluSx SINE Alu 1 297 -15 270 215 148 20 chr1 20275319 20275468 -222388885 + L1MC5 LINE L1 7550 7717 -244 2135 133 7 0 chr1 20275481 20275790 -222388563 - AluSx SINE Alu -1 311 1 1366 194 56 0 chr1 20275820 20276052 -222388301 + AluJb SINE Alu 1 245 -67 2011 149 14 0 chr1 20278087 20278382 -222385971 + AluSx SINE Alu 1 299 -13 261 146 0 0 chr1 20278382 20278430 -222385923 + (GA)n Simple_repeat Simple_repeat 1 48 0 1992 162 0 9 chr1 20278440 20278755 -222385598 + AluJo SINE Alu 1 312 0 1401 155 13 25 chr1 20278810 20279049 -222385304 - MER46A DNA MER2_type 0 236 1 774 254 97 0 chr1 20279055 20279240 -222385113 - MIR SINE MIR -32 230 28 361 300 113 13 chr1 20280086 20280236 -222384117 - MIR SINE MIR -86 176 12 610 286 7 7 chr1 20280381 20280521 -222383832 + MIR SINE MIR 15 154 -108 2861 165 58 2 chr1 20280521 20281043 -222383310 + Tigger7 DNA MER2_type 1 551 -182 530 167 0 0 chr1 20281045 20281129 -222383224 + Tigger7 DNA MER2_type 2504 2587 0 255 309 11 11 chr1 20281132 20281226 -222383127 + MIR SINE MIR 156 249 -13 270 320 196 19 chr1 20283849 20284212 -222380141 - L3 LINE CR1 -3 1574 1148 1100 143 7 0 chr1 20284625 20284779 -222379574 - AluJb SINE Alu -157 155 1 21 0 0 0 chr1 20284842 20284863 -222379490 + AT_rich Low_complexity Low_complexity 1 21 0 2566 66 0 0 chr1 20285221 20285525 -222378828 + AluY SINE Alu 1 304 -7 875 112 12 100 chr1 20285779 20285949 -222378404 + AluSg/x SINE Alu 156 310 0 227 37 0 0 chr1 20285950 20285977 -222378376 - L1MB5 LINE L1 -40 6134 6108 715 133 210 56 chr1 20288679 20288874 -222375479 + MER46A DNA MER2_type 1 225 -11 2442 60 0 66 chr1 20288921 20289254 -222375099 + AluY SINE Alu 1 311 0 1574 148 130 4 chr1 20289306 20289576 -222374777 + AluJo SINE Alu 9 312 0 1822 181 3 16 chr1 20289664 20289968 -222374385 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 20289986 20290008 -222374345 + AT_rich Low_complexity Low_complexity 1 22 0 350 237 85 10 chr1 20290143 20290273 -222374080 - MIR SINE MIR -62 146 42 490 295 44 26 chr1 20291688 20291925 -222372428 + MIR SINE MIR 9 248 -14 653 200 0 0 chr1 20291947 20292052 -222372301 + AluJo SINE Alu 2 106 -206 1774 123 44 0 chr1 20292158 20292409 -222371944 + AluJb SINE Alu 8 269 -43 15176 85 2 1 chr1 20292990 20295030 -222369323 - HERVK9 LTR ERVK -2537 3379 1337 3138 116 13 20 chr1 20295024 20295547 -222368806 - HERVK9 LTR ERVK -5309 607 1 * 3520 108 12 6 chr1 20295547 20296055 -222368298 - MER9 LTR ERVK 0 511 1 1050 178 16 5 chr1 20296086 20296257 -222368096 + AluJo SINE Alu 107 275 -37 399 21 0 0 chr1 20296257 20296305 -222368048 + (TC)n Simple_repeat Simple_repeat 2 49 0 279 0 0 0 chr1 20296304 20296335 -222368018 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 1050 178 16 5 chr1 20296305 20296354 -222367999 + AluJo SINE Alu 275 299 -13 1822 151 3 14 chr1 20296354 20296639 -222367714 + AluJb SINE Alu 14 295 -17 35 24 0 0 chr1 20296639 20296681 -222367672 + AT_rich Low_complexity Low_complexity 1 42 0 1446 205 50 14 chr1 20296681 20296799 -222367554 + L1M4 LINE L1 4382 4494 -1652 2230 109 0 0 chr1 20296799 20297103 -222367250 + AluSx SINE Alu 1 304 0 1446 205 50 14 chr1 20297103 20297407 -222366946 + L1M4 LINE L1 4494 4820 -1326 2392 100 13 0 chr1 20297435 20297744 -222366609 + AluSp SINE Alu 1 313 0 892 194 63 8 chr1 20298233 20298485 -222365868 - L1M4 LINE L1 -949 5197 4932 1388 164 0 94 chr1 20298486 20298607 -222365746 + AluJo SINE Alu 39 170 -142 2044 134 3 7 chr1 20298607 20298905 -222365448 + AluJb SINE Alu 9 305 -7 1388 164 0 94 chr1 20298905 20299082 -222365271 + AluJo SINE Alu 170 309 -3 944 205 87 14 chr1 20299084 20299372 -222364981 - L1M4 LINE L1 -1216 4930 4622 2455 75 0 0 chr1 20299407 20299701 -222364652 + AluSg1 SINE Alu 6 299 -10 1464 163 39 19 chr1 20299745 20300003 -222364350 + AluJo SINE Alu 1 263 -49 2020 155 3 0 chr1 20300261 20300557 -222363796 - AluJb SINE Alu -15 297 1 369 289 66 13 chr1 20300560 20300712 -222363641 - MIR SINE MIR -56 206 47 558 241 126 6 chr1 20301423 20301597 -222362756 - MIR SINE MIR -54 208 14 450 111 25 37 chr1 20301983 20302064 -222362289 + MER116 DNA Mariner 1 80 0 1256 185 3 96 chr1 20302302 20302425 -222361928 + AluJo SINE Alu 1 134 -178 534 31 0 0 chr1 20302425 20302489 -222361864 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 1256 185 3 96 chr1 20302489 20302678 -222361675 + AluJo SINE Alu 134 284 -28 221 86 57 0 chr1 20303110 20303145 -222361208 + MIR SINE MIR 108 144 -64 534 202 65 19 chr1 20303193 20303347 -222361006 + MIR SINE MIR 25 186 -62 803 150 0 39 chr1 20304016 20304143 -222360210 - FLAM_A SINE Alu -10 123 2 191 265 241 0 chr1 20304465 20304548 -222359805 + MIR SINE MIR 89 191 -71 242 250 90 30 chr1 20304591 20304691 -222359662 - MIR SINE MIR 0 262 157 294 259 25 12 chr1 20305088 20305169 -222359184 + MIR SINE MIR 114 195 -67 2135 139 0 7 chr1 20305188 20305491 -222358862 + AluSg SINE Alu 1 301 -9 396 323 130 10 chr1 20306530 20306722 -222357631 - MIR SINE MIR -27 235 21 360 286 9 18 chr1 20306749 20306861 -222357492 - L2 LINE L2 -10 3303 3193 241 149 43 0 chr1 20307383 20307430 -222356923 - MER103 DNA DNA -11 155 107 697 279 129 72 chr1 20307437 20307741 -222356612 + L2 LINE L2 1584 1869 -1445 760 136 0 50 chr1 20307741 20307881 -222356472 - FLAM_C SINE Alu 0 133 1 697 279 129 72 chr1 20307881 20308174 -222356179 + L2 LINE L2 1869 2215 -1099 247 317 118 57 chr1 20308891 20309137 -222355216 + L2 LINE L2 2979 3239 -33 401 217 66 93 chr1 20309357 20309445 -222354908 + L1M4 LINE L1 4342 4431 -1715 2434 68 3 3 chr1 20309445 20309737 -222354616 - AluSp SINE Alu -18 295 4 401 217 66 93 chr1 20309737 20309906 -222354447 + L1M4 LINE L1 4431 4592 -1554 1019 156 0 0 chr1 20310030 20310184 -222354169 - FRAM SINE Alu -12 154 1 1014 183 203 12 chr1 20310966 20311059 -222353294 + AluJo SINE Alu 2 76 -236 207 0 0 0 chr1 20311059 20311082 -222353271 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1014 183 203 12 chr1 20311082 20311239 -222353114 + AluJo SINE Alu 76 300 -12 493 182 29 193 chr1 20312073 20312353 -222352000 + MIR SINE MIR 28 261 -1 1719 211 55 0 chr1 20312644 20312990 -222351363 - MLT1A1 LTR MaLR 0 365 1 1704 213 82 47 chr1 20313075 20313549 -222350804 - L1ME1 LINE L1 0 6178 5697 2529 43 0 3 chr1 20313549 20313851 -222350502 + AluY SINE Alu 1 301 -10 1704 213 82 47 chr1 20313851 20313899 -222350454 - L1ME1 LINE L1 -481 5697 5652 1809 154 16 38 chr1 20313925 20314243 -222350110 - AluSx SINE Alu -1 311 1 625 160 56 24 chr1 20314365 20314490 -222349863 - FLAM_C SINE Alu -4 129 1 1489 215 25 30 chr1 20314490 20314894 -222349459 - Charlie4a DNA MER1_type -68 440 39 795 265 113 16 chr1 20315043 20315352 -222349001 + L2 LINE L2 2332 2670 -644 853 129 0 41 chr1 20315352 20315499 -222348854 - FLAM_C SINE Alu -2 141 1 1850 131 38 0 chr1 20315513 20315803 -222348550 - AluJb SINE Alu -11 301 1 268 167 0 0 chr1 20315805 20315847 -222348506 + L2 LINE L2 2659 2700 -614 797 278 0 23 chr1 20315856 20316072 -222348281 + L2 LINE L2 2856 3066 -247 1802 132 0 0 chr1 20316090 20316347 -222348006 - AluSx SINE Alu -55 257 1 700 143 86 24 chr1 20316827 20316956 -222347397 + MER33 DNA MER1_type 1 126 -104 1266 155 58 0 chr1 20316956 20317182 -222347171 + L1MB3 LINE L1 5920 6158 -25 213 214 22 22 chr1 20317186 20317275 -222347078 + (TA)n Simple_repeat Simple_repeat 2 90 0 308 244 23 23 chr1 20317282 20317368 -222346985 - L1MC4 LINE L1 -1339 6703 6618 * 327 276 46 0 chr1 20317294 20317381 -222346972 + L1MC4 LINE L1 6614 6704 -1338 278 171 73 16 chr1 20317382 20317505 -222346848 + (TA)n Simple_repeat Simple_repeat 2 131 0 303 253 69 11 chr1 20317513 20317600 -222346753 - L1MC4 LINE L1 -1339 6703 6612 212 204 19 0 chr1 20317624 20317678 -222346675 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 29 0 0 chr1 20317702 20317736 -222346617 + AT_rich Low_complexity Low_complexity 1 34 0 2177 89 0 52 chr1 20317805 20318129 -222346224 + AluSx SINE Alu 1 307 -5 667 257 99 118 chr1 20318129 20318141 -222346212 + L2 LINE L2 2305 2316 -997 2114 126 0 0 chr1 20318141 20318442 -222345911 + AluSx SINE Alu 1 301 -11 667 257 99 118 chr1 20318442 20318581 -222345772 + L2 LINE L2 2316 2456 -857 1908 140 71 14 chr1 20318581 20318945 -222345408 + L1MC1 LINE L1 5940 6324 -9 1786 123 22 51 chr1 20318946 20319262 -222345091 + AluJo SINE Alu 1 307 -5 667 257 99 118 chr1 20319262 20319862 -222344491 + L2 LINE L2 2455 3059 -254 2373 48 3 0 chr1 20319926 20320216 -222344137 - AluY SINE Alu -20 291 1 925 101 22 7 chr1 20320217 20320355 -222343998 - AluSq/x SINE Alu -172 140 1 499 289 52 0 chr1 20320365 20320500 -222343853 + L2 LINE L2 3161 3302 -11 183 100 0 0 chr1 20320793 20320823 -222343530 + (GA)n Simple_repeat Simple_repeat 1 30 0 924 118 0 7 chr1 20321669 20321804 -222342549 + AluSq/x SINE Alu 1 134 -179 381 314 70 92 chr1 20321901 20322071 -222342282 - L2 LINE L2 -9 3263 3091 1881 128 13 13 chr1 20322071 20322375 -222341978 + AluJb SINE Alu 1 304 -8 381 314 70 92 chr1 20322375 20322949 -222341404 - L2 LINE L2 -181 3091 2534 500 266 41 148 chr1 20323241 20323369 -222340984 + L2 LINE L2 2545 2685 -629 687 128 0 147 chr1 20323369 20323525 -222340828 - FLAM_C SINE Alu 0 133 1 1668 174 0 37 chr1 20323531 20323852 -222340501 - AluJo SINE Alu -3 309 1 500 266 41 148 chr1 20323852 20324134 -222340219 + L2 LINE L2 2690 2917 -397 603 241 36 36 chr1 20324156 20324322 -222340031 - L2 LINE L2 -4 3309 3144 1788 144 3 26 chr1 20324322 20324628 -222339725 + AluJo SINE Alu 1 299 -13 249 252 35 133 chr1 20324638 20324781 -222339572 + L2 LINE L2 3184 3312 -1 1683 165 10 16 chr1 20324976 20325285 -222339068 + AluJb SINE Alu 1 307 -5 276 226 0 0 chr1 20325338 20325391 -222338962 + HAL1 LINE L1 1485 1537 -970 233 222 0 0 chr1 20325423 20325468 -222338885 - LTR67 LTR ERVL -31 526 482 282 263 12 0 chr1 20325468 20325548 -222338805 + HAL1 LINE L1 1561 1641 -866 1927 131 0 3 chr1 20325740 20326030 -222338323 - AluSq SINE Alu 0 313 25 823 188 0 0 chr1 20326041 20326179 -222338174 - AluJb SINE Alu -4 308 171 1543 175 17 118 chr1 20326394 20326468 -222337885 + MLT1A1 LTR MaLR 1 81 -284 1940 162 0 0 chr1 20326468 20326771 -222337582 + AluJb SINE Alu 1 303 -9 1543 175 17 118 chr1 20326771 20327102 -222337251 + MLT1A1 LTR MaLR 81 365 0 739 317 54 5 chr1 20327128 20327352 -222337001 - HERV16 LTR ERVL -4761 235 1 787 258 5 125 chr1 20327358 20327374 -222336979 - LTR16A LTR ERVL -6 444 428 1477 224 83 6 chr1 20327374 20327713 -222336640 + MLT1A1 LTR MaLR 1 365 0 787 258 5 125 chr1 20327713 20327918 -222336435 - LTR16A LTR ERVL -22 428 200 1905 142 30 0 chr1 20327918 20328221 -222336132 - AluSx SINE Alu 0 312 1 787 258 5 125 chr1 20328221 20328248 -222336105 - LTR16A LTR ERVL -250 200 171 2161 133 72 20 chr1 20328248 20328594 -222335759 + THE1B LTR MaLR 1 364 0 787 258 5 125 chr1 20328594 20328711 -222335642 - LTR16A LTR ERVL -279 171 121 1992 117 0 3 chr1 20328819 20329132 -222335221 - AluSq SINE Alu 0 314 3 294 313 22 62 chr1 20329137 20329332 -222335021 - L1M4 LINE L1 -874 5272 5093 2007 128 7 0 chr1 20329332 20329630 -222334723 + AluSx SINE Alu 1 300 -12 294 313 22 62 chr1 20329630 20329754 -222334599 - L1M4 LINE L1 -1053 5093 4966 185 334 97 43 chr1 20329906 20330235 -222334118 + L2 LINE L2 1930 2276 -1038 1989 137 3 0 chr1 20330276 20330576 -222333777 - AluSg SINE Alu -9 301 1 2548 136 4 73 chr1 20330581 20330629 -222333724 - L1MC1 LINE L1 -15 6318 6268 1759 123 0 66 chr1 20330629 20330963 -222333390 + AluJo SINE Alu 1 312 0 2548 136 4 73 chr1 20330963 20331169 -222333184 - L1MC1 LINE L1 -65 6268 6049 1994 125 3 3 chr1 20331169 20331466 -222332887 + AluSx SINE Alu 1 297 -15 2548 136 4 73 chr1 20331466 20331601 -222332752 - L1MC1 LINE L1 -284 6049 5968 2008 131 3 6 chr1 20331601 20331914 -222332439 - AluSx SINE Alu 0 312 1 2548 136 4 73 chr1 20331914 20332029 -222332324 - L1MC1 LINE L1 -365 5968 5847 198 219 10 156 chr1 20332127 20332223 -222332130 - MIR SINE MIR -70 192 111 2018 107 0 33 chr1 20332447 20332747 -222331606 + AluSx SINE Alu 12 301 -11 22 35 0 0 chr1 20333152 20333181 -222331172 + AT_rich Low_complexity Low_complexity 1 29 0 303 289 82 0 chr1 20333294 20333391 -222330962 + L2 LINE L2 3205 3309 -4 2328 93 0 0 chr1 20334014 20334324 -222330029 - AluSg SINE Alu 0 310 1 2093 100 0 0 chr1 20334334 20334643 -222329710 - AluSx SINE Alu 0 309 1 1625 270 76 13 chr1 20334643 20335180 -222329173 + L2 LINE L2 1608 2178 -1136 180 0 0 0 chr1 20335769 20335789 -222328564 + (TTC)n Simple_repeat Simple_repeat 1 20 0 2121 120 0 0 chr1 20335791 20336091 -222328262 - AluSq SINE Alu -13 300 1 1951 238 118 25 chr1 20336183 20336822 -222327531 + L2 LINE L2 2318 3010 -303 2006 137 0 3 chr1 20336850 20337149 -222327204 - AluSx SINE Alu -14 298 1 2205 99 3 0 chr1 20337362 20337656 -222326697 + AluSp SINE Alu 2 296 -17 1470 177 4 11 chr1 20338502 20338768 -222325585 + AluJb SINE Alu 22 285 -27 1820 114 0 4 chr1 20338787 20339041 -222325312 - AluSx SINE Alu -59 253 1 227 91 0 23 chr1 20339050 20339094 -222325259 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 828 200 0 13 chr1 20339096 20339251 -222325102 - FAM SINE Alu -27 158 6 1717 167 3 3 chr1 20339262 20339562 -222324791 - AluJo SINE Alu -12 300 1 1927 125 7 0 chr1 20339567 20339854 -222324499 - AluSx SINE Alu -13 299 11 1971 136 0 0 chr1 20339966 20340253 -222324100 + AluJb SINE Alu 9 295 -17 180 0 0 0 chr1 20340330 20340350 -222324003 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1443 159 12 4 chr1 20340350 20340595 -222323758 - AluJb SINE Alu -65 247 1 1988 120 0 0 chr1 20340926 20341201 -222323152 + AluSx SINE Alu 1 275 -37 186 71 0 0 chr1 20341205 20341233 -222323120 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 681 256 43 39 chr1 20341309 20341543 -222322810 - L2 LINE L2 0 3313 3079 338 91 0 0 chr1 20341560 20341604 -222322749 - LTR33 LTR ERVL 0 521 478 1714 141 3 28 chr1 20341695 20341985 -222322368 + AluJb SINE Alu 1 283 -29 333 62 0 0 chr1 20341985 20342033 -222322320 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2001 117 3 38 chr1 20342033 20342350 -222322003 + AluSx SINE Alu 2 307 -5 484 198 207 0 chr1 20342357 20342478 -222321875 - LTR33 LTR ERVL -50 471 326 1500 140 68 118 chr1 20342483 20342738 -222321615 - MER7A DNA MER2_type -2692 346 115 2270 101 0 0 chr1 20342738 20343045 -222321308 - AluSx SINE Alu -5 307 1 1500 140 68 118 chr1 20343045 20343154 -222321199 - MER7A DNA MER2_type -2923 115 2 1457 174 56 11 chr1 20343175 20343462 -222320891 + AluSg SINE Alu 1 300 -10 235 294 15 15 chr1 20343530 20343598 -222320755 - MIR SINE MIR -124 84 17 1662 225 48 48 chr1 20343598 20343947 -222320406 - MLT1C LTR MaLR 0 467 119 1890 133 10 23 chr1 20343947 20344256 -222320097 - AluJo SINE Alu -7 305 1 1662 225 48 48 chr1 20344256 20344273 -222320080 - MLT1C LTR MaLR -348 119 103 1983 103 3 58 chr1 20344273 20344585 -222319768 - AluSq SINE Alu -18 295 1 1662 225 48 48 chr1 20344585 20344679 -222319674 - MLT1C LTR MaLR -363 104 6 1309 236 69 71 chr1 20344825 20345077 -222319276 + L1ME3A LINE L1 5412 5663 -507 1587 164 7 25 chr1 20345077 20345363 -222318990 + AluJb SINE Alu 1 281 -31 1309 236 69 71 chr1 20345363 20345441 -222318912 + L1ME3A LINE L1 5663 5740 -430 2184 115 0 0 chr1 20345441 20345746 -222318607 + AluSx SINE Alu 1 305 -7 1309 236 69 71 chr1 20345746 20345966 -222318387 + L1ME3A LINE L1 5740 5962 -208 1446 177 60 21 chr1 20346037 20346320 -222318033 + AluJo SINE Alu 3 296 -16 926 190 0 0 chr1 20346454 20346617 -222317736 - FRAM SINE Alu -21 155 1 1203 153 113 18 chr1 20346631 20346906 -222317447 - AluJb SINE Alu -11 301 1 1879 151 6 3 chr1 20347143 20347454 -222316899 - AluJo SINE Alu 0 312 1 1783 160 3 0 chr1 20347875 20348191 -222316162 + AluJb SINE Alu 1 317 0 907 199 0 12 chr1 20348196 20348362 -222315991 + FRAM SINE Alu 3 166 0 573 227 61 0 chr1 20348400 20348532 -222315821 - L1MC4a LINE L1 -1197 6611 6472 427 209 12 0 chr1 20348653 20348739 -222315614 - L2 LINE L2 0 3313 3227 288 237 14 7 chr1 20348785 20348854 -222315499 - MIR SINE MIR -126 82 17 303 285 146 14 chr1 20348957 20349101 -222315252 + MIR SINE MIR 79 241 -21 856 148 34 0 chr1 20349102 20349251 -222315102 - AluJb SINE Alu -22 290 137 2286 79 3 0 chr1 20349374 20349679 -222314674 - AluY SINE Alu -5 306 1 356 314 95 0 chr1 20349698 20349803 -222314550 - L2 LINE L2 -5 3267 3153 825 176 0 0 chr1 20349897 20350039 -222314314 + FLAM_C SINE Alu 1 142 -1 2280 105 0 0 chr1 20350060 20350366 -222313987 + AluSx SINE Alu 1 306 -6 1836 105 4 11 chr1 20350497 20350798 -222313555 + AluSx SINE Alu 19 317 0 192 94 57 75 chr1 20350801 20350854 -222313499 - L2 LINE L2 -4 3309 3258 1756 155 3 13 chr1 20351080 20351383 -222312970 - AluJb SINE Alu -12 300 1 690 199 75 0 chr1 20351485 20351631 -222312722 + MER2 DNA MER2_type 1 157 -188 510 145 0 0 chr1 20351651 20351727 -222312626 - AluJo SINE Alu -95 217 142 591 49 37 0 chr1 20351730 20351812 -222312541 + MER2 DNA MER2_type 122 206 -139 258 116 0 0 chr1 20351909 20351952 -222312401 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr1 20352922 20352964 -222311389 + GC_rich Low_complexity Low_complexity 1 42 0 318 339 50 8 chr1 20353520 20353641 -222310712 - MIR SINE MIR -64 144 19 424 235 0 0 chr1 20353745 20353826 -222310527 + L2 LINE L2 3193 3273 -40 559 232 42 0 chr1 20353892 20354034 -222310319 + MIR SINE MIR 71 218 -44 872 123 0 0 chr1 20354193 20354323 -222310030 + FLAM_C SINE Alu 2 131 -2 299 264 130 82 chr1 20354331 20354562 -222309791 + MIR SINE MIR 20 261 -1 32 26 0 0 chr1 20354569 20354608 -222309745 + AT_rich Low_complexity Low_complexity 1 39 0 821 142 0 22 chr1 20354608 20354742 -222309611 - AluJo SINE Alu -176 136 6 1738 161 3 7 chr1 20354755 20355054 -222309299 - AluJb SINE Alu -14 298 1 299 207 241 0 chr1 20355388 20355475 -222308878 - MIR SINE MIR -122 140 33 308 94 0 57 chr1 20355768 20355821 -222308532 - MADE1 DNA Mariner -29 51 2 182 179 0 0 chr1 20355958 20355986 -222308367 + MIR SINE MIR 125 152 -56 1804 169 3 0 chr1 20356303 20356598 -222307755 - AluJb SINE Alu -16 296 1 1882 154 7 0 chr1 20356994 20357300 -222307053 + AluJb SINE Alu 1 308 -4 572 247 124 5 chr1 20357724 20357918 -222306435 + L2 LINE L2 3095 3311 -2 1982 106 3 3 chr1 20358745 20359050 -222305303 + AluSq SINE Alu 1 305 0 225 299 131 19 chr1 20359438 20359545 -222304808 - L2 LINE L2 -559 2755 2637 428 216 112 32 chr1 20359787 20359912 -222304441 + MIR SINE MIR 107 241 -21 1848 136 3 10 chr1 20359922 20360223 -222304130 + AluSx SINE Alu 1 299 -13 210 308 33 33 chr1 20360409 20360500 -222303853 - L2 LINE L2 -39 3233 3143 294 225 34 79 chr1 20360643 20360732 -222303621 - MIR SINE MIR -3 259 175 2366 178 55 38 chr1 20360945 20361424 -222302929 - L1MB8 LINE L1 0 6178 5686 738 159 32 0 chr1 20361424 20361550 -222302803 - FLAM_A SINE Alu -3 130 1 2366 178 55 38 chr1 20361550 20361654 -222302699 - L1MB8 LINE L1 -492 5686 5585 222 292 129 72 chr1 20361654 20362003 -222302350 - L2 LINE L2 -565 2749 2381 2319 113 0 10 chr1 20362161 20362470 -222301883 + AluSx SINE Alu 1 306 -6 1300 214 153 8 chr1 20363403 20363776 -222300577 + L1ME1 LINE L1 4618 5044 -1102 815 207 96 12 chr1 20364307 20364558 -222299795 + L1ME1 LINE L1 5012 5283 -863 425 252 54 0 chr1 20364581 20364692 -222299661 - FLAM_C SINE Alu -25 118 2 1039 164 53 0 chr1 20364692 20364863 -222299490 - AluJb SINE Alu -1 311 132 22 0 0 0 chr1 20364863 20364885 -222299468 + AT_rich Low_complexity Low_complexity 1 22 0 2326 218 35 21 chr1 20364912 20365490 -222298863 + L1ME1 LINE L1 5358 5943 -223 2269 99 3 0 chr1 20365560 20365854 -222298499 + AluSc SINE Alu 1 295 -14 1117 152 12 0 chr1 20366066 20366237 -222298116 - AluJb SINE Alu 0 312 140 2191 117 6 25 chr1 20366633 20366949 -222297404 - AluSx SINE Alu -2 310 1 958 193 6 0 chr1 20367167 20367333 -222297020 - AluJb SINE Alu -8 304 138 2370 101 3 0 chr1 20367387 20367683 -222296670 + AluSx SINE Alu 1 297 -15 2114 94 22 50 chr1 20367727 20368046 -222296307 - AluY SINE Alu -1 310 1 1902 144 0 0 chr1 20368138 20368408 -222295945 + AluSx SINE Alu 1 270 -42 314 288 82 60 chr1 20368915 20369099 -222295254 + L2 LINE L2 2615 2802 -512 247 286 169 79 chr1 20369190 20369379 -222294974 + L2 LINE L2 3044 3249 -23 535 197 181 48 chr1 20369510 20369698 -222294655 + MIR SINE MIR 2 214 -48 721 132 0 0 chr1 20369769 20369875 -222294478 - AluSg/x SINE Alu -8 304 199 261 198 0 0 chr1 20370043 20370124 -222294229 + (CA)n Simple_repeat Simple_repeat 2 82 0 1223 30 0 0 chr1 20370181 20370314 -222294039 - AluY SINE Alu -178 133 1 507 217 34 91 chr1 20371009 20371184 -222293169 - MIR SINE MIR -26 236 72 995 168 0 58 chr1 20371270 20371461 -222292892 - AluJb SINE Alu -12 300 121 2323 89 10 3 chr1 20371609 20371913 -222292440 - AluSx SINE Alu -6 306 1 208 195 24 0 chr1 20372427 20372468 -222291885 + MIR SINE MIR 20 61 -201 198 103 0 0 chr1 20373604 20373633 -222290720 + (TA)n Simple_repeat Simple_repeat 2 30 0 1695 171 10 55 chr1 20373810 20373981 -222290372 - AluJo SINE Alu -16 296 144 180 0 0 0 chr1 20373981 20374001 -222290352 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1695 171 10 55 chr1 20374001 20374139 -222290214 - AluJo SINE Alu -168 144 1 403 327 154 19 chr1 20374184 20374398 -222289955 - MIR SINE MIR -7 255 13 253 259 83 46 chr1 20377170 20377278 -222287075 + MIR SINE MIR 10 122 -86 2391 83 0 3 chr1 20378618 20378918 -222285435 - AluSc SINE Alu -10 299 1 1478 105 52 0 chr1 20379680 20379890 -222284463 - AluSg/x SINE Alu -4 308 88 2322 104 0 13 chr1 20379969 20380285 -222284068 - AluSx SINE Alu 0 312 1 475 225 169 0 chr1 20380698 20380858 -222283495 + MIR SINE MIR 2 188 -74 180 255 94 66 chr1 20380909 20381015 -222283338 - MIR SINE MIR -69 139 31 286 342 76 16 chr1 20381592 20381804 -222282549 - MIR SINE MIR -2 260 35 391 309 48 8 chr1 20383057 20383183 -222281170 - L2 LINE L2 -15 3257 3127 2253 97 13 3 chr1 20383764 20384072 -222280281 - AluSp SINE Alu -2 311 1 2470 90 0 0 chr1 20384099 20384399 -222279954 + AluSc SINE Alu 1 300 -9 266 313 12 0 chr1 20385900 20385980 -222278373 + MIR SINE MIR 31 111 -97 2130 138 0 0 chr1 20385994 20386291 -222278062 + AluJo SINE Alu 1 297 -15 315 0 0 0 chr1 20386292 20386327 -222278026 + (CA)n Simple_repeat Simple_repeat 1 35 0 424 308 101 6 chr1 20386690 20386849 -222277504 - MIR SINE MIR -87 175 2 2111 153 0 6 chr1 20387197 20387511 -222276842 - AluJb SINE Alu 0 312 1 1634 185 111 13 chr1 20387511 20387899 -222276454 - L1MC4 LINE L1 -879 7163 6734 312 27 0 0 chr1 20387949 20387986 -222276367 + (TG)n Simple_repeat Simple_repeat 1 37 0 310 177 65 0 chr1 20387993 20388055 -222276298 - L1MC4 LINE L1 -1481 6561 6496 943 0 0 0 chr1 20388304 20388408 -222275945 - L1PA3 LINE L1 -1 6154 6051 2291 120 0 0 chr1 20388408 20388709 -222275644 - AluSx SINE Alu -11 301 1 23 33 0 0 chr1 20388791 20388821 -222275532 + AT_rich Low_complexity Low_complexity 1 30 0 255 195 268 0 chr1 20388984 20389066 -222275287 + MIR3 SINE MIR 79 182 -26 250 304 199 12 chr1 20389600 20389771 -222274582 + L2 LINE L2 2602 2804 -510 864 238 22 30 chr1 20389806 20390037 -222274316 + MIR SINE MIR 8 236 -26 1102 252 52 14 chr1 20390062 20390352 -222274001 + L2 LINE L2 2657 2957 -357 2286 117 3 0 chr1 20390359 20390668 -222273685 - AluY SINE Alu -1 310 1 2360 113 0 0 chr1 20390752 20391054 -222273299 - AluSx SINE Alu -7 305 4 211 232 24 136 chr1 20391094 20391151 -222273202 + L2 LINE L2 2989 3027 -245 1821 108 56 70 chr1 20391151 20391342 -222273011 - AluSx SINE Alu 0 309 122 261 0 0 0 chr1 20391342 20391371 -222272982 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1821 108 56 70 chr1 20391371 20391492 -222272861 - AluSx SINE Alu -187 122 1 211 232 24 136 chr1 20391492 20391558 -222272795 + L2 LINE L2 3027 3099 -173 2272 93 10 0 chr1 20392315 20392606 -222271747 + AluSq SINE Alu 1 294 -19 2583 74 7 0 chr1 20392757 20393066 -222271287 + AluSq SINE Alu 1 311 -2 2619 62 0 0 chr1 20393066 20393373 -222270980 + AluY SINE Alu 1 307 -4 1958 151 0 32 chr1 20393719 20394056 -222270297 - AluJo SINE Alu 0 312 1 245 246 197 66 chr1 20394298 20394401 -222269952 + MIR SINE MIR 26 102 -106 2080 142 0 0 chr1 20394401 20394697 -222269656 + AluSx SINE Alu 1 296 -16 245 246 197 66 chr1 20394697 20394715 -222269638 + MIR SINE MIR 102 116 -92 * 471 301 80 5 chr1 20394703 20394916 -222269437 - MIR SINE MIR -1 261 33 257 260 0 14 chr1 20394964 20395037 -222269316 - MIR SINE MIR -14 248 177 1905 108 115 7 chr1 20395157 20395436 -222268917 - AluSg1 SINE Alu 0 309 1 21 36 0 0 chr1 20395441 20395469 -222268884 + AT_rich Low_complexity Low_complexity 1 28 0 2167 127 0 0 chr1 20395474 20395765 -222268588 - AluSx SINE Alu -21 291 1 523 261 25 8 chr1 20395870 20395989 -222268364 + L2 LINE L2 3193 3313 0 321 266 28 0 chr1 20395997 20396096 -222268257 - MIR SINE MIR -65 143 79 615 307 70 19 chr1 20396760 20396975 -222267378 + MIR SINE MIR 9 234 -28 241 204 0 12 chr1 20397423 20397483 -222266870 + MIR SINE MIR 77 135 -73 634 119 0 0 chr1 20397556 20397640 -222266713 - AluJo/FRAM SINE Alu -47 265 182 2296 89 0 17 chr1 20397642 20397977 -222266376 - AluSx SINE Alu 0 312 2 250 279 221 10 chr1 20397982 20398086 -222266267 + MIR SINE MIR 136 261 -1 2072 113 25 0 chr1 20398157 20398475 -222265878 + AluSq SINE Alu 2 326 0 214 298 228 9 chr1 20398475 20398589 -222265764 - L2 LINE L2 -5 3267 3129 28 71 0 0 chr1 20399804 20399860 -222264493 + GC_rich Low_complexity Low_complexity 1 56 0 33 107 0 0 chr1 20399980 20400111 -222264242 + GC_rich Low_complexity Low_complexity 1 131 0 22 80 0 0 chr1 20400233 20400283 -222264070 + GC_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr1 20400495 20400530 -222263823 + GC_rich Low_complexity Low_complexity 1 35 0 200 241 46 11 chr1 20400686 20400773 -222263580 + (TCTCTG)n Simple_repeat Simple_repeat 2 91 0 180 217 313 35 chr1 20401968 20402083 -222262270 - MIR3 SINE MIR -26 182 36 595 249 96 20 chr1 20402723 20402881 -222261472 - MIR SINE MIR -11 251 74 1463 185 70 7 chr1 20402881 20403151 -222261202 + AluJo SINE Alu 25 311 -1 595 249 96 20 chr1 20403151 20403189 -222261164 - MIR SINE MIR -188 74 40 387 105 0 0 chr1 20403547 20403604 -222260749 + (TG)n Simple_repeat Simple_repeat 1 57 0 585 273 56 0 chr1 20404847 20404990 -222259363 + MIR SINE MIR 48 198 -64 300 184 0 126 chr1 20405007 20405044 -222259309 + MER7A DNA MER2_type 31 52 -2986 2325 85 3 0 chr1 20405044 20405354 -222258999 - AluSx SINE Alu 0 311 1 300 184 0 126 chr1 20405354 20405402 -222258951 + MER7A DNA MER2_type 52 104 -242 1583 186 4 0 chr1 20405409 20405657 -222258696 - AluJo SINE Alu -63 249 1 944 28 0 0 chr1 20405666 20405795 -222258558 - AluY SINE Alu 0 304 176 938 169 141 0 chr1 20405798 20405982 -222258371 + MER7A DNA MER2_type 126 335 -1 313 316 95 25 chr1 20406761 20406919 -222257434 - MIR SINE MIR -71 191 23 309 68 0 0 chr1 20407333 20407377 -222256976 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 1300 181 28 87 chr1 20407392 20407596 -222256757 - AluJo SINE Alu -10 302 122 234 0 0 0 chr1 20407596 20407622 -222256731 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1300 181 28 87 chr1 20407622 20407738 -222256615 - AluJo SINE Alu -190 122 1 2326 100 0 0 chr1 20408401 20408690 -222255663 + AluSx SINE Alu 1 289 -23 2587 47 3 0 chr1 20408701 20409002 -222255351 + AluY SINE Alu 1 302 -9 197 281 31 47 chr1 20409241 20409305 -222255048 - MER5A DNA MER1_type -110 79 17 * 198 271 21 0 chr1 20409259 20409307 -222255046 + MER5A DNA MER1_type 141 189 0 1945 135 30 7 chr1 20409823 20410120 -222254233 + AluJb SINE Alu 1 304 -8 398 211 122 48 chr1 20410292 20410439 -222253914 - MIR SINE MIR -42 220 63 569 273 85 43 chr1 20410439 20410667 -222253686 - MIR SINE MIR -6 256 4 414 316 83 76 chr1 20411364 20411890 -222252463 + L2 LINE L2 2719 3249 -23 218 156 22 0 chr1 20411890 20411935 -222252418 + GA-rich Low_complexity Low_complexity 1 46 0 278 244 44 98 chr1 20411958 20412163 -222252190 - L2 LINE L2 -201 3112 2919 216 97 0 0 chr1 20412721 20412752 -222251601 + (CCCCCA)n Simple_repeat Simple_repeat 4 34 0 384 293 100 0 chr1 20414605 20414755 -222249598 - MIR SINE MIR -70 192 28 209 356 58 0 chr1 20414778 20414882 -222249471 - MIR SINE MIR -69 193 84 1755 139 87 7 chr1 20414998 20415286 -222249067 + AluJb SINE Alu 1 311 -1 279 250 47 0 chr1 20415286 20415350 -222249003 + polypurine Low_complexity Low_complexity 2 68 0 2398 75 0 0 chr1 20415777 20416084 -222248269 - AluSc SINE Alu -2 307 1 740 296 18 22 chr1 20416227 20416450 -222247903 + MIR SINE MIR 41 262 0 395 152 202 30 chr1 20416512 20416611 -222247742 - L2 LINE L2 0 3313 3198 2292 60 0 3 chr1 20416875 20417193 -222247160 - AluY SINE Alu 0 317 1 1730 167 7 10 chr1 20417286 20417586 -222246767 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr1 20417647 20417670 -222246683 + AT_rich Low_complexity Low_complexity 1 23 0 800 179 51 66 chr1 20417743 20417939 -222246414 - AluJo SINE Alu -5 307 115 264 244 47 23 chr1 20418086 20418172 -222246181 - MIR SINE MIR -147 115 28 2247 106 3 0 chr1 20418305 20418616 -222245737 - AluSq SINE Alu -1 312 1 423 306 33 30 chr1 20418659 20418836 -222245517 - MIR SINE MIR -69 139 16 358 244 22 67 chr1 20419056 20419191 -222245162 + MIR3 SINE MIR 34 162 -46 404 254 17 102 chr1 20419322 20419377 -222244976 + L2 LINE L2 3098 3156 -157 2353 77 6 6 chr1 20419377 20419688 -222244665 - AluSx SINE Alu -1 311 1 404 254 17 102 chr1 20419688 20419868 -222244485 + L2 LINE L2 3156 3313 0 308 227 2 29 chr1 20420170 20420246 -222244107 - MIR SINE MIR -63 145 79 28 0 0 0 chr1 20420635 20420663 -222243690 + GC_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr1 20421483 20421546 -222242807 + GC_rich Low_complexity Low_complexity 1 63 0 1021 297 205 27 chr1 20422286 20423096 -222241257 + L2 LINE L2 2251 3235 -78 1752 111 0 0 chr1 20423099 20423343 -222241010 - AluSg/x SINE Alu 0 310 67 516 147 0 73 chr1 20423935 20424044 -222240309 - FRAM SINE Alu -1 175 75 525 174 87 0 chr1 20424070 20424162 -222240191 - FRAM SINE Alu -57 119 20 606 181 164 0 chr1 20424293 20424409 -222239944 - FLAM_A SINE Alu -7 135 1 975 255 79 34 chr1 20424412 20424792 -222239561 + MER113 DNA MER1_type? 82 478 -43 588 250 122 0 chr1 20425014 20425178 -222239175 - MIR SINE MIR -8 254 71 480 280 152 5 chr1 20425245 20425456 -222238897 + L2 LINE L2 1994 2235 -1079 1309 80 0 0 chr1 20425468 20425631 -222238722 - AluSx SINE Alu -149 163 1 1031 320 59 29 chr1 20425746 20426150 -222238203 + L2 LINE L2 2806 3229 -84 2003 142 7 3 chr1 20426150 20426459 -222237894 - AluSx SINE Alu -2 310 1 1031 320 59 29 chr1 20426459 20426544 -222237809 + L2 LINE L2 3229 3310 -3 330 308 77 8 chr1 20426664 20426794 -222237559 - L2 LINE L2 0 3272 3134 246 369 0 13 chr1 20427876 20428045 -222236308 + CT-rich Low_complexity Low_complexity 1 166 0 501 321 160 9 chr1 20428225 20428450 -222235903 + MIR SINE MIR 3 257 -5 1193 161 5 19 chr1 20428451 20428656 -222235697 + AluJo SINE Alu 9 210 -102 1023 239 40 0 chr1 20428844 20429091 -222235262 - MIR SINE MIR 0 262 6 2073 80 40 0 chr1 20429122 20429420 -222234933 + AluSp SINE Alu 1 309 0 2107 142 0 3 chr1 20429554 20429863 -222234490 - AluJb SINE Alu -4 308 1 504 256 77 53 chr1 20429941 20430095 -222234258 - L1ME4a LINE L1 -188 5933 5769 2175 128 3 0 chr1 20430095 20430401 -222233952 - AluSx SINE Alu -5 307 1 504 256 77 53 chr1 20430401 20430492 -222233861 - L1ME4a LINE L1 -352 5769 5682 562 282 144 6 chr1 20430864 20431045 -222233308 + MIR SINE MIR 56 261 -1 208 196 4 122 chr1 20431063 20431158 -222233195 + MIR SINE MIR 47 135 -73 485 308 154 18 chr1 20431853 20432080 -222232273 - MIR SINE MIR -4 258 1 216 0 0 0 chr1 20432914 20432938 -222231415 + (TG)n Simple_repeat Simple_repeat 1 24 0 2112 106 0 3 chr1 20433451 20433735 -222230618 - AluSx SINE Alu -29 283 1 324 390 0 0 chr1 20434035 20434212 -222230141 + (CTAGGG)n Simple_repeat Simple_repeat 1 177 0 436 240 182 19 chr1 20435459 20435613 -222228740 + MER5A DNA MER1_type 4 182 -7 514 343 50 6 chr1 20435712 20435893 -222228460 + MIR SINE MIR 30 218 -44 354 320 40 0 chr1 20436733 20436858 -222227495 + MIR3 SINE MIR 30 159 -49 2121 116 7 3 chr1 20436916 20437217 -222227136 + AluSx SINE Alu 1 302 -10 1572 114 87 24 chr1 20437217 20437469 -222226884 - AluJo SINE Alu -30 282 13 187 296 0 0 chr1 20437587 20437631 -222226722 + MIR SINE MIR 104 147 -61 745 306 53 33 chr1 20437704 20437949 -222226404 + MIR SINE MIR 13 262 0 308 256 124 16 chr1 20438070 20438191 -222226162 + MER91C DNA MER1_type 7 140 0 2133 96 33 3 chr1 20439454 20439756 -222224597 - AluSx SINE Alu 0 312 2 225 0 0 0 chr1 20439759 20439784 -222224569 + (T)n Simple_repeat Simple_repeat 1 25 0 1602 167 25 0 chr1 20439846 20440121 -222224232 - AluJo SINE Alu -30 282 1 417 259 0 61 chr1 20440151 20440282 -222224071 + MIR SINE MIR 63 185 -77 1067 273 99 5 chr1 20440320 20440734 -222223619 + MLT1J LTR MaLR 5 457 -54 2033 143 0 3 chr1 20440738 20441045 -222223308 + AluJb SINE Alu 1 306 -6 189 206 0 0 chr1 20441223 20441257 -222223096 + L2 LINE L2 3261 3294 -19 512 200 0 75 chr1 20441314 20441402 -222222951 - MIR SINE MIR -132 130 52 2289 78 0 44 chr1 20441402 20441722 -222222631 - AluY SINE Alu -5 306 1 512 200 0 75 chr1 20441722 20441753 -222222600 - MIR SINE MIR -210 52 20 298 310 83 30 chr1 20441752 20441916 -222222437 - MIR3 SINE MIR -11 197 22 * 336 293 66 48 chr1 20442390 20442557 -222221796 + MIR3 SINE MIR 2 171 -37 2175 125 0 3 chr1 20442635 20442948 -222221405 - AluSx SINE Alu 0 312 1 731 194 0 15 chr1 20442948 20443082 -222221271 - AluJo/FLAM SINE Alu -180 132 1 241 281 125 10 chr1 20443118 20443214 -222221139 + MIR SINE MIR 150 256 -6 382 179 0 0 chr1 20443271 20443338 -222221015 - MLT1J LTR MaLR -198 313 247 207 331 105 41 chr1 20443828 20444000 -222220353 + L2 LINE L2 3040 3222 -50 390 246 127 14 chr1 20444155 20444297 -222220056 + MIR SINE MIR 89 246 -16 240 284 239 0 chr1 20444347 20444481 -222219872 + MIR SINE MIR 43 208 -54 694 146 7 49 chr1 20445201 20445345 -222219008 - MIR SINE MIR -119 143 6 754 188 6 29 chr1 20445561 20445731 -222218622 + LTR28 LTR ERV1 1 166 -854 * 1573 199 9 18 chr1 20445729 20446340 -222218013 + LTR28 LTR ERV1 300 1015 -5 238 202 53 85 chr1 20446464 20446558 -222217795 + MIR SINE MIR 117 207 -55 2384 86 0 0 chr1 20446560 20446863 -222217490 - AluY SINE Alu -8 303 1 2197 123 45 31 chr1 20447442 20447801 -222216552 + THE1B LTR MaLR 1 364 0 374 232 126 0 chr1 20448027 20448122 -222216231 + MIR SINE MIR 47 153 -109 2079 95 0 56 chr1 20448143 20448472 -222215881 + AluSq SINE Alu 1 312 0 2015 138 26 3 chr1 20448585 20448890 -222215463 + AluJb SINE Alu 1 312 0 2112 124 16 0 chr1 20448896 20449203 -222215150 + AluSx SINE Alu 1 312 0 303 252 95 54 chr1 20449294 20449441 -222214912 - MER5A DNA MER1_type -8 177 18 1825 173 0 0 chr1 20449702 20449997 -222214356 - AluJb SINE Alu -17 295 1 612 125 0 0 chr1 20500228 20500324 -222164029 + (TTTTC)n Simple_repeat Simple_repeat 5 100 0 198 263 0 0 chr1 20500312 20500369 -222163984 + C-rich Low_complexity Low_complexity 6 62 0 * 2245 106 23 0 chr1 20500371 20500672 -222163681 - AluSg SINE Alu -2 308 1 181 289 208 17 chr1 20500673 20500846 -222163507 + L2 LINE L2 2748 2953 -361 456 289 116 0 chr1 20501211 20501384 -222162969 - L2 LINE L2 -5 3308 3116 2489 92 0 0 chr1 20501388 20501694 -222162659 + AluSc SINE Alu 1 306 -3 458 307 104 10 chr1 20501971 20502163 -222162190 + MIR SINE MIR 7 216 -46 398 309 97 12 chr1 20502621 20502786 -222161567 + MIR SINE MIR 68 246 -16 21 36 0 0 chr1 20502791 20502819 -222161534 + AT_rich Low_complexity Low_complexity 1 28 0 2396 92 3 13 chr1 20502819 20503135 -222161218 - AluSq SINE Alu 0 313 1 3082 144 29 20 chr1 20503158 20503719 -222160634 - L1MB2 LINE L1 -7 6164 5599 699 269 89 14 chr1 20504068 20504529 -222159824 - L2 LINE L2 -257 3056 2549 2113 148 3 0 chr1 20505255 20505559 -222158794 + AluSx SINE Alu 1 305 -7 190 137 216 20 chr1 20505801 20505852 -222158501 - L2 LINE L2 -6 3307 3247 2233 136 58 3 chr1 20506137 20506482 -222157871 - THE1B LTR MaLR 0 364 1 33 0 0 0 chr1 20506978 20507011 -222157342 + AT_rich Low_complexity Low_complexity 1 33 0 233 272 244 64 chr1 20507122 20507351 -222157002 + L2 LINE L2 2850 3036 -277 1926 122 73 7 chr1 20507351 20507637 -222156716 + AluSg SINE Alu 2 306 -4 233 272 244 64 chr1 20507637 20507800 -222156553 + L2 LINE L2 3036 3313 0 228 222 56 0 chr1 20508246 20508300 -222156053 - MIR SINE MIR -50 212 156 278 297 135 20 chr1 20508461 20508609 -222155744 + MIR SINE MIR 19 183 -79 334 305 8 31 chr1 20508613 20508741 -222155612 - L2 LINE L2 -4 3309 3185 2434 79 0 3 chr1 20508743 20509048 -222155305 + AluSx SINE Alu 7 310 -2 23 0 0 0 chr1 20509658 20509681 -222154672 + GC_rich Low_complexity Low_complexity 1 23 0 220 147 0 29 chr1 20509732 20509800 -222154553 + (CGGGG)n Simple_repeat Simple_repeat 2 67 0 2827 92 29 0 chr1 20510152 20510311 -222154042 - HUERS-P1 LTR ERV1 -3890 2373 2220 2329 105 3 16 chr1 20510311 20510626 -222153727 + AluSp SINE Alu 1 311 -2 2827 92 29 0 chr1 20510626 20510878 -222153475 - HUERS-P1 LTR ERV1 -4043 2220 1950 * 4161 157 72 25 chr1 20510862 20511472 -222152881 - HUERS-P1 LTR ERV1 -4171 1775 1195 186 71 0 0 chr1 20511472 20511500 -222152853 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 4161 157 72 25 chr1 20511500 20512444 -222151909 - HUERS-P1 LTR ERV1 -4751 1195 60 5255 85 21 6 chr1 20512545 20513615 -222150738 - L1PA10 LINE L1 -187 5981 4894 1991 132 0 10 chr1 20513615 20513919 -222150434 - AluJb SINE Alu -11 301 1 5255 85 21 6 chr1 20513919 20513933 -222150420 - L1PA10 LINE L1 -1274 4894 4882 835 330 27 33 chr1 20514079 20514259 -222150094 - L1PA14 LINE L1 -1 6120 5941 1734 145 0 24 chr1 20514259 20514570 -222149783 - AluSx SINE Alu 0 304 1 835 330 27 33 chr1 20514570 20514585 -222149768 - L1PA14 LINE L1 -180 5941 5927 1610 75 0 0 chr1 20514585 20514797 -222149556 - AluY SINE Alu 0 311 100 835 330 27 33 chr1 20514797 20515006 -222149347 - L1PA14 LINE L1 -194 5927 5717 535 219 180 22 chr1 20515050 20515233 -222149120 - L2 LINE L2 -504 2810 2599 198 97 32 0 chr1 20515239 20515270 -222149083 - L2 LINE L2 -18 3295 3264 351 291 8 45 chr1 20515282 20515416 -222148937 + MER5A DNA MER1_type 60 188 -1 677 236 79 2 chr1 20515495 20515681 -222148672 - MIR SINE MIR -45 217 23 2084 126 0 0 chr1 20516232 20516533 -222147820 - AluSx SINE Alu -11 301 1 867 213 121 36 chr1 20516662 20516967 -222147386 - MER113 DNA MER1_type? -3 518 188 840 160 94 90 chr1 20516967 20517211 -222147142 - L1MD3 LINE L1 -22 7973 7729 1842 145 3 7 chr1 20517215 20517512 -222146841 - AluJb SINE Alu -16 296 1 236 351 106 10 chr1 20517536 20517744 -222146609 - L2 LINE L2 -454 2860 2633 2038 96 50 0 chr1 20517849 20518131 -222146222 + AluSc SINE Alu 1 296 -13 348 249 92 116 chr1 20518198 20518325 -222146028 - L1ME3A LINE L1 -1 6161 6043 1528 181 10 24 chr1 20518325 20518617 -222145736 + AluJo SINE Alu 7 294 -18 348 249 92 116 chr1 20518617 20518740 -222145613 - L1ME3A LINE L1 -119 6043 5919 189 319 102 69 chr1 20518853 20519017 -222145336 - MIR SINE MIR -20 242 68 2011 131 0 22 chr1 20519017 20519331 -222145022 - AluSx SINE Alu -5 307 1 189 319 102 69 chr1 20519331 20519382 -222144971 - MIR SINE MIR -194 68 20 321 229 48 185 chr1 20519458 20519750 -222144603 + MIR SINE MIR 9 260 -2 277 278 23 23 chr1 20520208 20520341 -222144012 - LTR67 LTR ERVL 0 557 425 1671 103 0 0 chr1 20520469 20520683 -222143670 + Charlie3 DNA MER1_type 50 263 -2447 255 236 0 0 chr1 20520731 20520786 -222143567 + L2 LINE L2 3218 3272 0 2179 108 0 6 chr1 20520815 20521129 -222143224 - AluSx SINE Alu 0 312 1 657 306 102 0 chr1 20521660 20521895 -222142458 + MIR SINE MIR 4 262 0 393 267 168 12 chr1 20522046 20522207 -222142146 - MIR SINE MIR -46 216 31 299 245 102 0 chr1 20522514 20522612 -222141741 - MIR SINE MIR -119 143 36 2092 127 0 13 chr1 20523086 20523402 -222140951 - AluSx SINE Alu 0 312 1 689 261 66 46 chr1 20523578 20523805 -222140548 + MIR SINE MIR 18 248 -14 494 69 46 35 chr1 20526471 20526558 -222137795 - Alu SINE Alu -2 307 220 659 121 0 10 chr1 20527649 20527748 -222136605 + MER4A LTR ERV1 1 98 -566 1691 120 17 80 chr1 20527748 20528105 -222136248 + MER4A LTR ERV1 261 653 -11 1252 308 70 34 chr1 20528174 20528732 -222135621 + MLT1K LTR MaLR 11 588 0 1661 124 94 8 chr1 20529032 20529299 -222135054 - AluSx SINE Alu -22 290 1 374 236 0 45 chr1 20529627 20529737 -222134616 + MIR SINE MIR 39 143 -119 1745 144 4 0 chr1 20529738 20530016 -222134337 + AluJb SINE Alu 1 279 -33 200 86 29 0 chr1 20530019 20530054 -222134299 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr1 20530989 20531011 -222133342 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 292 239 54 22 chr1 20531218 20531310 -222133043 + MIR SINE MIR 49 143 -65 1971 124 0 13 chr1 20531423 20531729 -222132624 - AluSq SINE Alu -11 302 1 563 275 70 64 chr1 20531769 20531903 -222132450 - L1ME4a LINE L1 -15 6106 5974 2244 102 0 3 chr1 20531903 20532216 -222132137 - AluSq SINE Alu -1 312 1 563 275 70 64 chr1 20532216 20532521 -222131832 - L1ME4a LINE L1 -147 5974 5664 2005 150 3 0 chr1 20532970 20533276 -222131077 + AluSx SINE Alu 3 309 -3 929 125 0 22 chr1 20533597 20533733 -222130620 + FLAM_C SINE Alu 1 133 0 28 22 0 22 chr1 20533736 20533756 -222130597 + AT_rich Low_complexity Low_complexity 1 20 -25 2129 102 0 3 chr1 20533756 20534050 -222130303 + AluSq SINE Alu 2 294 -19 28 22 0 22 chr1 20534050 20534075 -222130278 + AT_rich Low_complexity Low_complexity 20 45 0 647 203 0 0 chr1 20534222 20534340 -222130013 + FRAM SINE Alu 48 165 -11 927 52 0 0 chr1 20534521 20534636 -222129717 - L1PA8 LINE L1 0 6172 6058 436 266 7 0 chr1 20534643 20534782 -222129571 - L1MC4a LINE L1 -1983 5825 5686 1291 140 0 18 chr1 20535195 20535424 -222128929 + AluJb SINE Alu 80 304 -8 314 283 89 45 chr1 20535427 20535645 -222128708 + LTR43 LTR ERV1 221 366 -146 4289 98 29 0 chr1 20535645 20536240 -222128113 - LTR9 LTR ERV1 0 612 1 314 283 89 45 chr1 20536240 20536333 -222128020 + LTR43 LTR ERV1 366 453 -59 690 152 19 0 chr1 20536419 20536524 -222127829 - LTR9 LTR ERV1 0 612 506 1693 127 0 78 chr1 20536587 20536925 -222127428 + AluSx SINE Alu 1 314 0 335 260 22 8 chr1 20536934 20537042 -222127311 - L1MC4a LINE L1 -541 5580 5487 1701 151 3 14 chr1 20537140 20537424 -222126929 - AluJo SINE Alu -25 287 7 1153 83 0 0 chr1 20537643 20537800 -222126553 - AluSq SINE Alu -1 312 156 590 94 12 0 chr1 20537800 20537885 -222126468 - AluSq SINE Alu -226 87 2 4532 110 14 30 chr1 20538130 20538832 -222125521 + L1PA16 LINE L1 5408 6098 -68 784 110 0 63 chr1 20538832 20538959 -222125394 - AluSq/x SINE Alu -193 120 2 186 71 0 0 chr1 20538963 20538991 -222125362 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 1026 177 38 38 chr1 20539123 20539360 -222124993 - L1M3 LINE L1 -566 5605 5369 * 4928 153 24 36 chr1 20539349 20540038 -222124315 - L1MC1 LINE L1 -320 6013 5318 2103 100 0 7 chr1 20540038 20540351 -222124002 - AluSx SINE Alu 0 311 1 4928 153 24 36 chr1 20540351 20540526 -222123827 - L1MC1 LINE L1 -1015 5318 5142 2305 99 0 0 chr1 20540526 20540838 -222123515 - AluSx SINE Alu 0 312 1 4928 153 24 36 chr1 20540838 20541039 -222123314 - L1MC1 LINE L1 -1191 5142 4946 1506 203 14 3 chr1 20541039 20541330 -222123023 + L2 LINE L2 2392 2685 -629 7779 210 8 31 chr1 20541351 20542622 -222121731 + L1M4 LINE L1 14 1236 -5306 2187 92 0 10 chr1 20542622 20542928 -222121425 + AluY SINE Alu 1 303 -8 7779 210 8 31 chr1 20542928 20543385 -222120968 + L1M4 LINE L1 1236 1702 -4840 972 183 61 19 chr1 20543635 20543850 -222120503 - MIR SINE MIR -21 241 20 558 284 147 0 chr1 20544065 20544290 -222120063 - MIR SINE MIR -3 259 2 587 228 44 13 chr1 20544349 20544507 -222119846 - MIR SINE MIR -12 250 88 1449 254 17 3 chr1 20544512 20544874 -222119479 + LTR16A LTR ERVL 22 388 -62 2112 112 7 3 chr1 20544941 20545244 -222119109 - AluSx SINE Alu -8 304 1 311 254 73 85 chr1 20545576 20545753 -222118600 + L1ME4a LINE L1 5947 6121 0 595 212 69 1 chr1 20545769 20545922 -222118431 - MER63 DNA MER1_type -22 1666 28 2133 94 13 13 chr1 20545981 20546279 -222118074 + AluSq SINE Alu 1 298 -15 263 122 0 0 chr1 20546279 20546328 -222118025 + L1MB4 LINE L1 6132 6180 0 2131 123 0 0 chr1 20546360 20546662 -222117691 + AluSx SINE Alu 1 302 -10 276 189 4 0 chr1 20546878 20546932 -222117421 - L1ME2 LINE L1 0 6162 6107 663 191 254 10 chr1 20546932 20547141 -222117212 + L2 LINE L2 1817 2076 -1238 * 2322 279 134 20 chr1 20547139 20547286 -222117067 - L2 LINE L2 -1959 1355 1226 1305 201 28 18 chr1 20547286 20547569 -222116784 + AluJo SINE Alu 1 286 -26 2322 279 134 20 chr1 20547569 20548092 -222116261 - L2 LINE L2 -2088 1226 764 1779 141 3 30 chr1 20548092 20548390 -222115963 + AluSx SINE Alu 3 292 -20 2322 279 134 20 chr1 20548390 20548826 -222115527 - L2 LINE L2 -2550 764 121 358 306 69 14 chr1 20549096 20549240 -222115113 - MIR SINE MIR -12 250 99 397 215 0 74 chr1 20549345 20549466 -222114887 + MLT1K LTR MaLR 470 581 -7 2280 107 0 0 chr1 20550053 20550361 -222113992 - AluSg SINE Alu -2 308 1 818 155 16 0 chr1 20550361 20550490 -222113863 - AluJo/FLAM SINE Alu -171 131 1 220 206 59 78 chr1 20550682 20550784 -222113569 + MIR SINE MIR 162 261 -1 286 288 85 39 chr1 20550833 20550986 -222113367 + MIR SINE MIR 2 161 -101 249 320 48 32 chr1 20551234 20551359 -222112994 + L1MEd LINE L1 527 653 -5466 1371 119 0 0 chr1 20551441 20551635 -222112718 + AluSg SINE Alu 17 210 -100 413 103 0 0 chr1 20551635 20551693 -222112660 + AluSg/x SINE Alu 76 133 -177 1900 141 0 3 chr1 20551693 20551984 -222112369 + AluSx SINE Alu 1 290 -22 326 301 61 61 chr1 20551992 20552454 -222111899 + L1MEd LINE L1 730 1191 -4928 2331 77 3 0 chr1 20552464 20552762 -222111591 + AluSp SINE Alu 1 299 -14 2068 111 0 0 chr1 20553088 20553385 -222110968 - AluSg SINE Alu -13 297 1 435 207 86 17 chr1 20553414 20553530 -222110823 + L2 LINE L2 3148 3271 -1 372 188 40 89 chr1 20553529 20553630 -222110723 + MIR SINE MIR 97 192 -70 * 242 259 0 0 chr1 20553674 20553728 -222110625 + MIR SINE MIR 101 154 -108 577 228 44 38 chr1 20554425 20554583 -222109770 - MLT1J2 LTR MaLR 0 450 292 410 268 18 9 chr1 20554577 20554689 -222109664 - MLT1J1 LTR MaLR -281 165 53 * 569 254 116 12 chr1 20554765 20554938 -222109415 - MIR SINE MIR -61 201 11 741 293 54 20 chr1 20555039 20555336 -222109017 + L2 LINE L2 3005 3311 -2 180 0 0 0 chr1 20555426 20555446 -222108907 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 184 271 0 0 chr1 20555513 20555561 -222108792 - L2 LINE L2 -209 3063 3016 238 344 45 40 chr1 20556302 20556677 -222107676 - L1ME4a LINE L1 -20 6101 5725 1818 159 0 0 chr1 20556757 20557046 -222107307 - AluSx SINE Alu -23 289 1 2099 136 0 0 chr1 20557557 20557865 -222106488 - AluSx SINE Alu -2 310 3 549 265 36 18 chr1 20558119 20558285 -222106068 - MIR SINE MIR -85 177 9 1756 161 6 16 chr1 20558509 20558820 -222105533 + AluJo SINE Alu 1 308 -4 2228 94 3 0 chr1 20559318 20559615 -222104738 + AluSx SINE Alu 1 298 -14 2190 98 3 3 chr1 20559958 20560263 -222104090 + AluSg SINE Alu 1 305 -5 340 224 104 57 chr1 20560289 20560369 -222103984 + L1ME4a LINE L1 5902 5977 -144 561 113 0 0 chr1 20560369 20560449 -222103904 - MER116 DNA Mariner 0 80 1 340 224 104 57 chr1 20560449 20560560 -222103793 + L1ME4a LINE L1 5977 6102 -19 2150 113 0 0 chr1 20560561 20560870 -222103483 - AluSx SINE Alu -3 309 1 470 274 92 26 chr1 20560983 20561136 -222103217 + MIR3 SINE MIR 35 197 -11 333 89 10 0 chr1 20561426 20561481 -222102872 - Alu SINE Alu -258 42 1 453 273 91 32 chr1 20561581 20561735 -222102618 + MIR3 SINE MIR 35 197 -11 669 110 0 0 chr1 20562222 20562322 -222102031 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1945 115 7 3 chr1 20562324 20562612 -222101741 - AluSg1 SINE Alu -20 289 1 258 320 131 48 chr1 20562812 20563018 -222101335 - MIR SINE MIR -21 241 19 2032 140 0 10 chr1 20563184 20563499 -222100854 + AluSx SINE Alu 1 299 -13 753 93 0 0 chr1 20563560 20563667 -222100686 + (CCA)n Simple_repeat Simple_repeat 1 107 0 2380 125 27 29 chr1 20563772 20564148 -222100205 + THE1C LTR MaLR 1 375 0 1896 157 0 27 chr1 20564213 20564513 -222099840 + AluJb SINE Alu 1 292 -20 2247 105 0 0 chr1 20564521 20564815 -222099538 + AluY SINE Alu 1 294 -17 474 315 94 5 chr1 20566068 20566281 -222098072 - MIR SINE MIR -10 252 21 2129 70 0 0 chr1 20566493 20566763 -222097590 - MER41A LTR ERV1 -1 553 284 444 130 0 39 chr1 20566767 20566844 -222097509 + Alu SINE Alu 238 311 -1 5049 75 30 3 chr1 20566845 20567511 -222096842 - HUERS-P1 LTR ERV1 -3068 3195 2512 2456 233 32 15 chr1 20567650 20567691 -222096662 + L1MEc LINE L1 2109 2148 -4067 2147 102 0 3 chr1 20567691 20568009 -222096344 + AluSx SINE Alu 2 318 0 2456 233 32 15 chr1 20568009 20568712 -222095641 + L1MEc LINE L1 2148 2816 -3399 1270 211 29 36 chr1 20568713 20568822 -222095531 + AluJo SINE Alu 32 140 -189 2440 84 3 0 chr1 20568822 20569121 -222095232 + AluSq SINE Alu 1 300 -13 1270 211 29 36 chr1 20569121 20569311 -222095042 + AluJo SINE Alu 140 329 0 2272 92 14 0 chr1 20569311 20569605 -222094748 + AluSp SINE Alu 2 299 -14 4951 216 14 52 chr1 20569609 20570838 -222093515 + L1MEc LINE L1 2820 3991 -2224 757 220 0 0 chr1 20570838 20570970 -222093383 + FLAM_A SINE Alu 1 132 -1 4951 216 14 52 chr1 20570970 20571146 -222093207 + L1MEc LINE L1 3991 4172 -2043 383 69 35 0 chr1 20571149 20571207 -222093146 + (TTCC)n Simple_repeat Simple_repeat 4 63 0 2072 120 29 19 chr1 20571207 20571516 -222092837 - AluSx SINE Alu 0 312 1 262 207 126 0 chr1 20571517 20571604 -222092749 + L1MEc LINE L1 4163 4260 -1955 1147 215 32 47 chr1 20571628 20571972 -222092381 + L1MEc LINE L1 4215 4553 -1662 4896 163 45 24 chr1 20572073 20572171 -222092182 + L1MB7 LINE L1 5132 5226 -1027 1746 164 7 20 chr1 20572171 20572475 -222091878 + AluJb SINE Alu 5 304 -8 4896 163 45 24 chr1 20572475 20573455 -222090898 + L1MB7 LINE L1 5226 6234 -19 1477 217 176 56 chr1 20573460 20573726 -222090627 + L1MC4 LINE L1 6491 6724 -1318 2006 131 0 3 chr1 20573726 20574044 -222090309 + AluSx SINE Alu 1 317 0 1477 217 176 56 chr1 20574044 20574311 -222090042 + L1MC4 LINE L1 6724 7089 -953 2202 100 10 0 chr1 20574327 20574616 -222089737 + AluSq SINE Alu 1 292 -21 2304 224 60 39 chr1 20574630 20574792 -222089561 + L1MC4 LINE L1 7250 7407 -635 2100 86 57 0 chr1 20574792 20575071 -222089282 + AluSg SINE Alu 1 295 -15 2304 224 60 39 chr1 20575071 20575556 -222088797 + L1MC4 LINE L1 7407 7911 -131 889 182 14 0 chr1 20575588 20575736 -222088617 - MER63 DNA MER1_type -55 781 6 847 171 0 0 chr1 20575801 20575930 -222088423 + FLAM_C SINE Alu 1 129 -14 2213 107 0 3 chr1 20576052 20576351 -222088002 - AluSx SINE Alu -14 298 1 258 243 81 40 chr1 20576651 20576725 -222087628 - L2 LINE L2 -34 3238 3162 2089 130 0 3 chr1 20576872 20577171 -222087182 - AluSx SINE Alu -14 298 1 201 306 0 0 chr1 20577248 20577297 -222087056 + L2 LINE L2 3214 3262 -10 2029 93 50 4 chr1 20577448 20577727 -222086626 + AluSg1 SINE Alu 1 292 -17 714 143 143 25 chr1 20577747 20577866 -222086487 + FLAM_C SINE Alu 1 133 0 450 36 0 0 chr1 20578291 20578347 -222086006 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 2051 139 0 0 chr1 20578756 20579051 -222085302 + AluSx SINE Alu 1 295 -17 474 315 94 5 chr1 20580303 20580516 -222083837 - MIR SINE MIR -10 252 21 2129 70 0 0 chr1 20580728 20580998 -222083355 - MER41A LTR ERV1 -1 553 284 444 130 0 39 chr1 20581002 20581079 -222083274 + Alu SINE Alu 238 311 -1 5202 86 28 6 chr1 20581080 20581798 -222082555 - HUERS-P1 LTR ERV1 -3068 3195 2462 2351 81 10 7 chr1 20581910 20582219 -222082134 - AluSq SINE Alu -2 311 2 2439 100 0 0 chr1 20582219 20582548 -222081805 - MER41A LTR ERV1 -225 329 1 243 242 32 0 chr1 20583057 20583119 -222081234 - MIR SINE MIR -67 141 78 2306 106 6 0 chr1 20583207 20583518 -222080835 - AluSq SINE Alu 0 313 1 411 143 0 0 chr1 20583602 20583665 -222080688 - MER53 DNA DNA 0 189 127 1766 160 0 17 chr1 20583788 20584112 -222080241 - AluJb SINE Alu 0 312 3 414 256 286 12 chr1 20584128 20584296 -222080057 + MIR SINE MIR 49 262 0 451 163 45 203 chr1 20584515 20584615 -222079738 - MER69A DNA AcHobo -2351 175 121 2305 101 3 7 chr1 20584615 20584923 -222079430 + AluSg SINE Alu 1 307 -3 451 163 45 203 chr1 20584923 20585024 -222079329 - MER69A DNA AcHobo -2405 121 6 860 259 40 100 chr1 20585035 20585553 -222078800 + MLT1J LTR MaLR 25 511 0 420 294 32 10 chr1 20585556 20585675 -222078678 + MIR SINE MIR 40 163 -45 35 41 0 0 chr1 20585675 20585724 -222078629 + AT_rich Low_complexity Low_complexity 1 49 0 239 340 32 51 chr1 20585737 20586091 -222078262 + L1ME4a LINE L1 4812 5156 -990 2092 133 0 3 chr1 20586091 20586385 -222077968 - AluSg SINE Alu -17 293 1 239 340 32 51 chr1 20586385 20586498 -222077855 + L1ME4a LINE L1 5156 5270 -876 1338 188 38 25 chr1 20586508 20586714 -222077639 + MER33 DNA MER1_type 1 203 -2382 252 0 0 0 chr1 20586714 20586742 -222077611 + (TA)n Simple_repeat Simple_repeat 2 29 0 1956 147 10 7 chr1 20586742 20587048 -222077305 - AluJb SINE Alu -5 307 1 1338 188 38 25 chr1 20587048 20587160 -222077193 + MER33 DNA MER1_type 202 324 0 542 315 36 13 chr1 20587161 20587463 -222076890 + L1ME4a LINE L1 5260 5568 -791 2155 132 0 0 chr1 20587599 20587902 -222076451 - AluSq SINE Alu -10 303 1 265 243 43 0 chr1 20587910 20587980 -222076373 + L1ME4a LINE L1 5582 5654 -2154 23 0 0 0 chr1 20588456 20588479 -222075874 + AT_rich Low_complexity Low_complexity 1 23 0 705 156 65 54 chr1 20588502 20588688 -222075665 + MER53 DNA DNA 2 189 0 566 240 47 13 chr1 20589035 20589211 -222075142 + MIR SINE MIR 6 184 -60 317 195 0 12 chr1 20589269 20589351 -222075002 + (TA)n Simple_repeat Simple_repeat 1 81 0 297 149 45 45 chr1 20589364 20589431 -222074922 + L1ME4a LINE L1 5944 6010 -111 2441 84 3 0 chr1 20589937 20590236 -222074117 + AluSp SINE Alu 1 300 -13 2244 114 0 7 chr1 20590247 20590555 -222073798 + AluSc SINE Alu 1 306 -3 504 223 106 43 chr1 20591457 20591645 -222072708 + MIR SINE MIR 63 262 0 899 211 38 19 chr1 20592276 20592489 -222071864 + MIR SINE MIR 14 230 -32 275 274 92 46 chr1 20592572 20592725 -222071628 + MIR SINE MIR 2 161 -101 254 320 48 32 chr1 20592973 20593098 -222071255 + L1MEd LINE L1 527 653 -5466 1438 119 0 0 chr1 20593180 20593374 -222070979 + AluSg SINE Alu 17 210 -100 438 103 0 0 chr1 20593374 20593432 -222070921 + AluSq/x SINE Alu 78 135 -178 2009 141 0 3 chr1 20593432 20593723 -222070630 + AluSx SINE Alu 1 290 -22 325 286 67 67 chr1 20593731 20594193 -222070160 + L1MEd LINE L1 730 1191 -4928 2092 96 0 27 chr1 20594203 20594518 -222069835 + AluSq SINE Alu 1 307 0 1126 233 51 91 chr1 20594646 20594924 -222069429 - MLT1J1 LTR MaLR -2 444 229 3696 78 13 0 chr1 20594924 20595388 -222068965 - L1PA13 LINE L1 -4 6159 5690 1126 233 51 91 chr1 20595388 20595568 -222068785 - MLT1J1 LTR MaLR -217 229 43 291 296 171 45 chr1 20595626 20595802 -222068551 + L2 LINE L2 3115 3312 -1 22 80 0 0 chr1 20595807 20595857 -222068496 + AT_rich Low_complexity Low_complexity 1 50 0 279 251 90 63 chr1 20595857 20596076 -222068277 - MLT1K LTR MaLR -12 603 369 2132 74 53 33 chr1 20596640 20596939 -222067414 - AluY SINE Alu -4 307 3 272 277 84 32 chr1 20597459 20597614 -222066739 - L2 LINE L2 -180 3092 2930 240 284 0 15 chr1 20597998 20598065 -222066288 + LTR67 LTR ERVL 490 555 -2 292 271 82 0 chr1 20598357 20598442 -222065911 + L2 LINE L2 3219 3310 -3 290 305 93 77 chr1 20598521 20599092 -222065261 + ERVL LTR ERVL 993 1572 -4192 1043 297 126 54 chr1 20599321 20599557 -222064796 - HAL1 LINE L1 -665 1842 1624 916 204 204 0 chr1 20599557 20599743 -222064610 + MER58A DNA MER1_type 1 224 0 1043 297 126 54 chr1 20599743 20600126 -222064227 - HAL1 LINE L1 -883 1624 1270 2323 83 0 13 chr1 20600126 20600428 -222063925 - AluY SINE Alu -13 298 1 1043 297 126 54 chr1 20600428 20600520 -222063833 - HAL1 LINE L1 -1237 1270 1186 2015 123 4 0 chr1 20600520 20600796 -222063557 - AluSq SINE Alu -3 310 34 1043 297 126 54 chr1 20600796 20601107 -222063246 - HAL1 LINE L1 -1321 1186 744 342 0 0 0 chr1 20601287 20601325 -222063028 + (TG)n Simple_repeat Simple_repeat 1 38 0 3111 84 65 7 chr1 20601400 20601776 -222062577 + MLT2A1 LTR ERVL 3 407 -37 354 80 0 0 chr1 20601776 20601826 -222062527 + (TA)n Simple_repeat Simple_repeat 2 51 0 3111 84 65 7 chr1 20601826 20601865 -222062488 + MLT2A1 LTR ERVL 407 442 -2 834 260 126 64 chr1 20601878 20602362 -222061991 + MLT1K LTR MaLR 71 584 -4 230 232 71 0 chr1 20603325 20603381 -222060972 - L2 LINE L2 -2 3311 3252 227 311 100 0 chr1 20605730 20605820 -222058533 - MIR SINE MIR -76 132 34 227 311 100 0 chr1 20607580 20607670 -222056683 - MIR SINE MIR -76 132 34 261 219 55 14 chr1 20608120 20608193 -222056160 - L2 LINE L2 0 3313 3238 346 195 133 44 chr1 20608410 20608523 -222055830 + MIR SINE MIR 119 241 -21 189 161 0 0 chr1 20608764 20608795 -222055558 - L2 LINE L2 -9 3304 3274 371 370 90 6 chr1 20608862 20609205 -222055148 - L2 LINE L2 -582 2732 2361 307 246 215 0 chr1 20609814 20609944 -222054409 + L2 LINE L2 3115 3272 0 288 302 174 49 chr1 20610049 20610599 -222053754 + L2 LINE L2 2420 3053 -219 1020 204 92 46 chr1 20610703 20611004 -222053349 - MER77 LTR ERV1 -7 598 307 186 43 0 0 chr1 20611006 20611029 -222053324 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 346 202 12 48 chr1 20611136 20611220 -222053133 - MER77 LTR ERV1 -471 134 54 196 100 33 0 chr1 20611291 20611321 -222053032 + L2 LINE L2 3144 3174 -98 481 293 192 5 chr1 20611330 20611528 -222052825 + MIR SINE MIR 13 247 -15 272 200 18 127 chr1 20612365 20612530 -222051823 - L1ME4a LINE L1 -3 6118 5972 876 204 82 41 chr1 20612753 20613022 -222051331 - L1ME1 LINE L1 -5 6161 5882 28 0 0 0 chr1 20613844 20613872 -222050481 + AT_rich Low_complexity Low_complexity 1 28 0 612 173 62 78 chr1 20614496 20614675 -222049678 + MER69A DNA AcHobo 2 177 0 295 154 0 187 chr1 20614683 20614774 -222049579 - MER69A DNA AcHobo -103 74 1 22 0 0 0 chr1 20615264 20615286 -222049067 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1 20615382 20615416 -222048937 + AT_rich Low_complexity Low_complexity 1 34 0 2367 70 7 7 chr1 20615423 20615723 -222048630 - AluSp SINE Alu -13 300 1 2394 84 3 0 chr1 20615922 20616220 -222048133 + AluSp SINE Alu 1 299 -14 327 308 279 6 chr1 20616593 20616941 -222047412 + L3 LINE CR1 931 1373 -204 1122 198 73 42 chr1 20617032 20617166 -222047187 + MER33 DNA MER1_type 2 130 -2455 2281 99 6 10 chr1 20617166 20617479 -222046874 + AluSp SINE Alu 1 312 -1 1122 198 73 42 chr1 20617479 20617657 -222046696 + MER33 DNA MER1_type 130 324 0 895 153 15 56 chr1 20617665 20617861 -222046492 + MER5A DNA MER1_type 1 188 -1 473 264 33 55 chr1 20617884 20618066 -222046287 - MER5B DNA MER1_type 0 178 1 2160 108 0 7 chr1 20618798 20619077 -222045276 + AluSg SINE Alu 3 279 -31 983 137 128 39 chr1 20619715 20619919 -222044434 + Charlie1 DNA MER1_type 6 227 -2534 606 202 42 0 chr1 20619925 20620044 -222044309 + Charlie1 DNA MER1_type 2638 2761 0 271 244 26 13 chr1 20620475 20620553 -222043800 - L2 LINE L2 -5 3267 3189 1709 196 0 0 chr1 20620759 20621055 -222043298 - AluJb SINE Alu -15 297 2 1453 281 92 48 chr1 20621313 20622145 -222042208 - L1MC4a LINE L1 -752 5394 4600 1648 175 48 3 chr1 20622145 20622436 -222041917 - AluJb SINE Alu -8 304 1 1453 281 92 48 chr1 20622436 20622852 -222041501 - L1MC4a LINE L1 -1546 4600 4611 2241 76 53 23 chr1 20622852 20623156 -222041197 - AluSq SINE Alu 0 313 1 1453 281 92 48 chr1 20623156 20623243 -222041110 - L1MC4a LINE L1 -1534 4612 4530 301 263 30 30 chr1 20623275 20623374 -222040979 - L1MC4a LINE L1 -1686 4460 4362 4597 188 53 11 chr1 20623450 20624160 -222040193 - L1MB5 LINE L1 0 6174 5496 2372 72 0 3 chr1 20624160 20624451 -222039902 - AluY SINE Alu -21 290 1 4597 188 53 11 chr1 20624451 20624862 -222039491 - L1MB5 LINE L1 -678 5496 4058 377 269 32 59 chr1 20624869 20624982 -222039371 - L1ME LINE L1 -325 5796 5688 2076 139 0 13 chr1 20624982 20625298 -222039055 - AluJb SINE Alu 0 312 1 377 269 32 59 chr1 20625298 20625370 -222038983 - L1ME LINE L1 -433 5688 5616 2377 95 0 0 chr1 20627407 20627702 -222036651 + AluSg SINE Alu 1 295 -15 488 235 206 0 chr1 20627909 20628045 -222036308 + MER3 DNA MER1_type 46 209 0 288 242 16 0 chr1 20627992 20628054 -222036299 - MER3 DNA MER1_type -108 101 39 * 509 222 43 87 chr1 20628823 20629030 -222035323 - L1ME LINE L1 -365 5756 5559 2442 90 0 0 chr1 20633336 20633637 -222030716 - AluSg SINE Alu -9 301 1 202 258 101 0 chr1 20635819 20635908 -222028445 + L3 LINE CR1 1450 1547 -30 1459 188 3 24 chr1 20636859 20637151 -222027202 + AluJo SINE Alu 1 286 -26 269 174 72 14 chr1 20637475 20637544 -222026809 - MIR SINE MIR -156 106 34 1670 169 11 0 chr1 20637666 20637945 -222026408 + AluJo SINE Alu 1 282 -30 195 186 0 0 chr1 20638164 20638207 -222026146 - L2 LINE L2 -556 2758 2716 324 263 0 0 chr1 20638757 20638833 -222025520 + MIR SINE MIR 187 262 0 439 231 157 34 chr1 20639000 20639147 -222025206 - MER5A DNA MER1_type -8 181 17 2665 43 0 0 chr1 20639362 20639667 -222024686 + AluY SINE Alu 1 305 -6 2293 93 7 3 chr1 20640358 20640659 -222023694 - AluSp SINE Alu -11 302 1 2633 40 0 3 chr1 20641422 20641725 -222022628 + AluY SINE Alu 1 302 -9 13831 76 4 0 chr1 20641843 20643698 -222020655 - L1P LINE L1 -2802 3344 1482 3661 118 0 4 chr1 20643698 20644207 -222020146 - MER9 LTR ERVK 0 511 5 2032 65 76 0 chr1 20644211 20644473 -222019880 - HERVK9 LTR ERVK 0 5916 5635 22957 76 10 3 chr1 20644559 20647501 -222016852 - HERVK9 LTR ERVK -275 5641 2680 261 200 40 13 chr1 20647794 20647869 -222016484 + L2 LINE L2 2982 3058 -255 285 165 242 15 chr1 20648806 20648940 -222015413 - MIR SINE MIR -25 183 27 246 320 64 0 chr1 20649045 20649123 -222015230 + MER81 DNA DNA 2 84 -30 2471 65 7 0 chr1 20649124 20649431 -222014922 + AluY SINE Alu 1 309 -2 811 109 0 62 chr1 20649441 20649569 -222014784 + AluSq/x SINE Alu 1 120 -193 1968 141 21 55 chr1 20649569 20649953 -222014400 - L1PA16 LINE L1 -68 6098 5728 1648 124 11 28 chr1 20650609 20650647 -222013706 - L1PA16 LINE L1 -630 5531 5494 2171 125 0 3 chr1 20650647 20650943 -222013410 - AluSx SINE Alu -16 296 2 2162 108 10 0 chr1 20650944 20651232 -222013121 - AluSx SINE Alu -11 301 11 1648 124 11 28 chr1 20651232 20651418 -222012935 - L1PA16 LINE L1 -667 5494 5313 2429 75 0 0 chr1 20651418 20651713 -222012640 - AluY SINE Alu -15 296 2 1648 124 11 28 chr1 20651713 20651889 -222012464 - L1PA16 LINE L1 -848 5313 5135 1632 129 4 15 chr1 20651890 20652153 -222012200 + L1PA13 LINE L1 5901 6160 -3 2008 128 0 56 chr1 20652676 20652995 -222011358 + AluSx SINE Alu 1 301 -11 270 179 0 0 chr1 20653019 20653075 -222011278 + A-rich Low_complexity Low_complexity 1 56 0 2143 108 0 17 chr1 20653608 20653905 -222010448 - AluSq SINE Alu -21 292 1 2106 108 0 18 chr1 20653917 20654203 -222010150 - AluSg SINE Alu -15 295 15 205 306 0 16 chr1 20654331 20654393 -222009960 + MER5A DNA MER1_type 129 189 0 986 166 63 5 chr1 20654519 20654724 -222009629 + MER20 DNA MER1_type 1 217 -2 1603 189 47 10 chr1 20654898 20655195 -222009158 + AluJo SINE Alu 1 308 -4 342 115 0 0 chr1 20655195 20655247 -222009106 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 949 180 33 6 chr1 20655532 20655715 -222008638 + MER5A DNA MER1_type 2 189 0 606 157 26 9 chr1 20655960 20656075 -222008278 - HsTC2 DNA Tc2 -1774 124 8 950 251 64 4 chr1 20656306 20656557 -222007796 - MLT1J LTR MaLR -1 510 245 226 242 144 13 chr1 20656564 20656717 -222007636 - L2 LINE L2 -1155 2159 1987 962 278 72 30 chr1 20656998 20657361 -222006992 + LTR33 LTR ERVL 1 378 -143 794 126 17 0 chr1 20657369 20657488 -222006865 - LOR1a LTR ERV1 0 497 377 1800 193 44 42 chr1 20657596 20658005 -222006348 - LOR1b LTR ERV1 -51 410 1 434 248 23 23 chr1 20658005 20658126 -222006227 + LTR33 LTR ERVL 401 521 0 2629 253 98 17 chr1 20658128 20659155 -222005198 + L2 LINE L2 1840 2950 -364 1178 203 63 12 chr1 20659155 20659516 -222004837 + MER66A LTR ERV1 28 438 -40 755 258 28 16 chr1 20659516 20659768 -222004585 + L2 LINE L2 2938 3192 -121 1350 90 204 55 chr1 20659838 20660093 -222004260 - AluSg SINE Alu -17 293 1 198 219 0 0 chr1 20660130 20660171 -222004182 + L2 LINE L2 3268 3308 -5 708 203 20 20 chr1 20661554 20661707 -222002646 - MLT1D LTR MaLR -4 501 349 * 896 166 86 11 chr1 20661695 20661870 -222002483 - MLT1D LTR MaLR -317 188 1 426 194 0 0 chr1 20662170 20662242 -222002111 - LOR1b LTR ERV1 -36 425 354 1481 152 117 72 chr1 20662430 20662859 -222001494 - LTR7 LTR ERV1 -2 448 1 197 312 0 13 chr1 20663513 20663590 -222000763 - MIR SINE MIR -133 129 54 3724 100 20 60 chr1 20663705 20663773 -222000580 + LTR9B LTR ERV1 2 71 -573 1215 60 0 12 chr1 20663773 20663785 -222000568 - L1PA4 LINE L1 -1 6154 6143 204 67 0 0 chr1 20663785 20663815 -222000538 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1215 60 0 12 chr1 20663815 20663968 -222000385 - L1PA4 LINE L1 -12 6143 5991 3724 100 20 60 chr1 20663968 20664487 -221999866 + LTR9B LTR ERV1 71 566 -78 2341 110 3 0 chr1 20664490 20664801 -221999552 + AluY SINE Alu 1 311 0 232 114 0 0 chr1 20664801 20664836 -221999517 + (A)n Simple_repeat Simple_repeat 1 180 0 * 362 247 22 0 chr1 20664832 20664921 -221999432 + LTR9B LTR ERV1 554 644 0 237 282 0 14 chr1 20665034 20665105 -221999248 - MLT1K LTR MaLR 0 588 519 245 19 19 75 chr1 20665135 20665188 -221999165 + (CCCCCA)n Simple_repeat Simple_repeat 3 52 0 184 327 67 64 chr1 20665188 20665568 -221998785 - L2 LINE L2 -705 2609 2226 380 322 44 31 chr1 20665608 20665968 -221998385 - L2 LINE L2 -1220 2094 1730 247 188 0 0 chr1 20666234 20666282 -221998071 + L2 LINE L2 3139 3186 -86 222 219 0 0 chr1 20666282 20666323 -221998030 + L2 LINE L2 3144 3184 -88 309 281 0 52 chr1 20667025 20667121 -221997232 - L2 LINE L2 0 3313 3223 399 303 162 39 chr1 20667137 20667421 -221996932 + L2 LINE L2 2860 3178 -135 1163 280 38 14 chr1 20667526 20667947 -221996406 - LTR16B LTR ERVL 0 464 34 1733 223 2 8 chr1 20668096 20668495 -221995858 + L1ME2 LINE L1 5510 5906 -258 304 180 49 0 chr1 20668506 20668567 -221995786 + AluSp/q SINE Alu 232 295 -8 627 232 116 17 chr1 20668569 20668650 -221995703 + L1ME2 LINE L1 5900 5972 -192 2194 176 10 3 chr1 20668650 20669037 -221995316 + MLT1B LTR MaLR 1 390 0 627 232 116 17 chr1 20669037 20669196 -221995157 + L1ME2 LINE L1 5972 6164 0 286 261 31 37 chr1 20669220 20669381 -221994972 + L1MC5 LINE L1 7775 7934 -27 2516 80 0 3 chr1 20669419 20669730 -221994623 - AluSg SINE Alu 0 310 1 383 345 74 10 chr1 20669834 20670037 -221994316 + MIR SINE MIR 3 218 -44 2196 135 0 3 chr1 20670043 20670355 -221993998 - AluSq SINE Alu -2 311 1 294 297 51 8 chr1 20670356 20670474 -221993879 - MLT1K LTR MaLR -11 577 455 214 237 0 0 chr1 20670485 20670523 -221993830 + polypyrimidine Low_complexity Low_complexity 2 39 0 760 318 42 45 chr1 20670712 20671159 -221993194 + L2 LINE L2 2868 3313 0 296 327 58 0 chr1 20671158 20671262 -221993091 + MIR SINE MIR 134 243 -19 * 467 327 43 0 chr1 20671776 20671938 -221992415 + MER115 DNA AcHobo 91 259 -434 180 0 0 0 chr1 20672086 20672106 -221992247 + (TTCCC)n Simple_repeat Simple_repeat 3 22 0 2243 100 20 3 chr1 20672320 20672619 -221991734 - AluSg SINE Alu -4 306 3 233 232 18 0 chr1 20673152 20673208 -221991145 - L1MC/D LINE L1 -2158 5650 5594 405 273 71 96 chr1 20674314 20674396 -221989957 + HAL1 LINE L1 1108 1190 -1317 2002 149 0 7 chr1 20674396 20674697 -221989656 + 7SLRNA srpRNA srpRNA 2 300 -20 2356 93 3 13 chr1 20674697 20675006 -221989347 - AluSp SINE Alu 0 313 7 405 273 71 96 chr1 20675006 20675497 -221988856 + HAL1 LINE L1 1188 1668 -839 1837 151 10 40 chr1 20675843 20676142 -221988211 + AluJo SINE Alu 3 292 -20 835 204 250 4 chr1 20676181 20676441 -221987912 + MER5C DNA MER1_type 1 324 0 809 254 67 11 chr1 20676476 20676744 -221987609 - MER58 DNA MER1_type -58 283 1 1393 280 84 53 chr1 20676836 20677578 -221986775 - L1MC4a LINE L1 -1656 6152 5388 230 224 40 169 chr1 20677581 20677782 -221986571 - MER91A DNA MER1_type 0 196 22 856 182 0 0 chr1 20677919 20678062 -221986291 + FLAM_C SINE Alu 1 143 0 606 268 6 24 chr1 20678062 20678226 -221986127 - MER45A DNA AcHobo -17 161 1 342 250 291 14 chr1 20678482 20678630 -221985723 - MIR SINE MIR -54 208 20 690 183 0 58 chr1 20678636 20678773 -221985580 - FLAM_A SINE Alu 0 133 5 543 265 205 40 chr1 20679498 20679996 -221984357 + MLT1L LTR MaLR 21 600 -15 616 304 210 20 chr1 20680137 20681392 -221982961 + L2 LINE L2 1731 3233 -39 270 0 0 0 chr1 20682397 20682427 -221981926 + (CA)n Simple_repeat Simple_repeat 1 30 0 238 304 11 39 chr1 20682753 20682934 -221981419 + (CA)n Simple_repeat Simple_repeat 1 176 0 186 211 70 18 chr1 20683512 20683569 -221980784 - L2 LINE L2 0 3272 3213 312 284 24 22 chr1 20684166 20684343 -221980010 + MLT1I LTR MaLR 268 398 -11 2120 163 62 33 chr1 20684401 20684855 -221979498 + MLT1C LTR MaLR 1 467 0 362 313 45 81 chr1 20685201 20685364 -221978989 - L2 LINE L2 -42 3271 3118 3602 108 54 40 chr1 20685364 20685936 -221978417 + LTR19B LTR ERV1 1 580 0 362 313 45 81 chr1 20685936 20686018 -221978335 - L2 LINE L2 -195 3118 3035 2404 94 0 0 chr1 20686131 20686440 -221977913 - AluSc SINE Alu 0 309 1 2415 183 97 26 chr1 20686524 20687131 -221977222 - L1MC4a LINE L1 -3 7805 7156 3648 106 115 72 chr1 20687132 20688059 -221976294 - pTR5 LTR ERV1 -5 2433 1158 715 110 189 0 chr1 20688163 20688290 -221976063 - MSTA LTR MaLR -2 426 276 4092 83 14 20 chr1 20688293 20688844 -221975509 + LTR14 LTR ERVK 1 548 0 5039 123 7 3 chr1 20688844 20689598 -221974755 + HERVKC4 LTR ERVK 1 757 -4505 3034 294 12 3 chr1 20689579 20690487 -221973866 + HERVKC4 LTR ERVK 862 1777 -5640 * 11108 190 20 10 chr1 20690475 20693578 -221970775 + HERVKC4 LTR ERVK 3517 5256 -6 3932 73 6 20 chr1 20693580 20694117 -221970236 + LTR14 LTR ERVK 1 529 -19 874 148 40 0 chr1 20694294 20694443 -221969910 - MSTA LTR MaLR -273 155 1 627 207 0 0 chr1 20694443 20694593 -221969760 + (ATG)n Simple_repeat Simple_repeat 1 150 0 374 273 50 29 chr1 20694851 20695061 -221969292 - MIR3 SINE MIR -8 254 37 2307 117 0 0 chr1 20695730 20696038 -221968315 - AluSq SINE Alu -5 308 1 376 218 97 26 chr1 20696275 20696502 -221967851 + ORSL DNA AcHobo 2 273 -2 349 289 125 8 chr1 20696555 20696683 -221967670 + MIR SINE MIR 114 256 -6 224 342 34 33 chr1 20696740 20696863 -221967490 - MIR SINE MIR -62 146 27 243 0 0 0 chr1 20698216 20698243 -221966110 + (TCTCCC)n Simple_repeat Simple_repeat 3 29 0 187 172 103 52 chr1 20699462 20699512 -221964841 + L3 LINE CR1 1426 1478 -99 331 273 45 65 chr1 20699512 20699666 -221964687 + MIR3 SINE MIR 1 151 -57 196 204 129 43 chr1 20701055 20701148 -221963205 - L2 LINE L2 -1 3271 3171 1290 96 14 53 chr1 20701277 20701485 -221962868 - MER30 DNA MER1_type -29 201 2 452 277 29 15 chr1 20701487 20701624 -221962729 - L2 LINE L2 -517 2797 2659 2324 115 0 0 chr1 20701675 20701979 -221962374 - AluSx SINE Alu -8 304 1 366 190 44 13 chr1 20702337 20702445 -221961908 + MIR SINE MIR 45 152 -61 350 268 169 56 chr1 20702468 20702681 -221961672 + MIR SINE MIR 20 256 -6 366 261 133 39 chr1 20702931 20703111 -221961242 + MIR SINE MIR 66 262 0 247 260 0 0 chr1 20703109 20703159 -221961194 - MIR SINE MIR -15 247 198 * 666 267 36 61 chr1 20703193 20703440 -221960913 - MIR SINE MIR -6 256 16 258 305 0 0 chr1 20703535 20703594 -221960759 + polypyrimidine Low_complexity Low_complexity 5 63 0 207 122 0 49 chr1 20703597 20703638 -221960715 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 189 171 0 0 chr1 20703652 20703687 -221960666 + CT-rich Low_complexity Low_complexity 4 38 0 3074 202 61 19 chr1 20703687 20704285 -221960068 - L1ME3 LINE L1 -8 6154 5516 2616 65 0 0 chr1 20704285 20704593 -221959760 + AluY SINE Alu 1 308 -3 3074 202 61 19 chr1 20704593 20704750 -221959603 - L1ME3 LINE L1 -646 5516 5367 1902 151 17 20 chr1 20704753 20705052 -221959301 - AluJo SINE Alu -14 298 1 635 75 0 21 chr1 20705061 20705155 -221959198 - AluSg/x SINE Alu -5 304 213 513 268 57 60 chr1 20705161 20705460 -221958893 - L1ME3 LINE L1 -797 5349 5052 790 156 0 0 chr1 20705779 20705901 -221958452 + MER1B DNA MER1_type 1 122 -175 210 333 76 0 chr1 20705920 20706025 -221958328 - MIR SINE MIR -48 214 102 1352 114 19 19 chr1 20706026 20706236 -221958117 + MER1B DNA MER1_type 130 339 0 317 320 25 16 chr1 20706296 20706418 -221957935 - L2 LINE L2 0 3272 3150 398 281 39 31 chr1 20706441 20706569 -221957784 - L2 LINE L2 0 3272 3144 305 307 83 53 chr1 20707227 20707455 -221956898 + L2 LINE L2 3033 3267 -5 965 229 25 62 chr1 20707495 20707666 -221956687 + MIR SINE MIR 25 187 -75 2087 109 33 0 chr1 20707666 20707993 -221956360 + AluSx SINE Alu 1 336 0 965 229 25 62 chr1 20707993 20708060 -221956293 + MIR SINE MIR 187 255 -7 182 234 109 47 chr1 20708080 20708144 -221956209 + MIR SINE MIR 98 165 -97 709 243 136 65 chr1 20708147 20708167 -221956186 - MLT1L LTR MaLR -5 610 593 1388 219 68 7 chr1 20708167 20708459 -221955894 - AluJo SINE Alu -1 311 2 709 243 136 65 chr1 20708459 20708584 -221955769 - MLT1L LTR MaLR -22 593 478 1972 154 3 3 chr1 20708584 20708883 -221955470 + AluSx SINE Alu 2 300 -12 709 243 136 65 chr1 20708883 20709119 -221955234 - MLT1L LTR MaLR -137 478 201 2387 101 3 0 chr1 20709176 20709482 -221954871 - AluSx SINE Alu -2 310 4 216 224 41 0 chr1 20709751 20709800 -221954553 - L2 LINE L2 -12 3301 3251 2161 128 26 7 chr1 20710023 20710329 -221954024 + AluSx SINE Alu 1 312 0 862 243 37 9 chr1 20710528 20710746 -221953607 - MER58A DNA MER1_type 0 224 1 240 337 10 20 chr1 20710747 20710845 -221953508 + MIR3 SINE MIR 14 110 -98 2146 94 3 44 chr1 20710854 20711171 -221953182 + AluSq SINE Alu 1 305 0 400 276 22 103 chr1 20711344 20711529 -221952824 + MIR SINE MIR 83 252 -10 973 183 61 19 chr1 20711714 20711929 -221952424 - MIR SINE MIR -21 241 20 570 284 147 0 chr1 20712144 20712369 -221951984 - MIR SINE MIR -3 259 2 589 228 44 13 chr1 20712428 20712586 -221951767 - MIR SINE MIR -12 250 88 1347 271 17 3 chr1 20712591 20712953 -221951400 + LTR16A LTR ERVL 22 388 -62 2180 133 3 0 chr1 20713015 20713323 -221951030 - AluSx SINE Alu -3 309 1 2369 95 0 3 chr1 20714273 20714579 -221949774 + AluSq SINE Alu 1 305 -8 1111 253 4 9 chr1 20715082 20715311 -221949042 - MIR SINE MIR -15 247 20 184 189 104 113 chr1 20715466 20715572 -221948781 + L2 LINE L2 3132 3236 -77 202 303 40 0 chr1 20715840 20715916 -221948437 - MIR SINE MIR -19 243 165 * 598 289 77 29 chr1 20715914 20716291 -221948062 + L2 LINE L2 2517 2911 -403 443 149 14 0 chr1 20716351 20716425 -221947928 + Charlie3 DNA MER1_type 2628 2702 -8 228 208 19 0 chr1 20717252 20717305 -221947048 + MLT1L LTR MaLR 504 557 -58 382 248 68 17 chr1 20717334 20717451 -221946902 + MER5A DNA MER1_type 8 130 -59 2368 106 0 3 chr1 20718117 20718420 -221945933 - AluSq SINE Alu -10 303 2 445 207 30 52 chr1 20718421 20718556 -221945797 - MIR SINE MIR -58 150 19 568 282 105 6 chr1 20718878 20719059 -221945294 - MIR SINE MIR -3 259 61 349 239 76 0 chr1 20719309 20719401 -221944952 - MIR3 SINE MIR -21 187 89 554 264 31 12 chr1 20719495 20719658 -221944695 + MIR SINE MIR 88 253 -9 420 258 62 16 chr1 20719696 20719824 -221944529 + MIR3 SINE MIR 36 169 -39 295 324 57 0 chr1 20719953 20720058 -221944295 + L2 LINE L2 3198 3308 -5 758 196 48 48 chr1 20720622 20720811 -221943542 - MER20 DNA MER1_type -7 212 24 231 299 75 28 chr1 20720946 20721087 -221943266 - MIR SINE MIR -57 151 16 2227 62 79 17 chr1 20721362 20721653 -221942700 - AluSp SINE Alu -4 309 1 227 286 14 29 chr1 20721703 20721773 -221942580 - L2 LINE L2 -1 3271 3203 746 246 83 42 chr1 20721777 20722017 -221942336 - MIR SINE MIR -2 260 11 597 312 13 39 chr1 20722742 20722853 -221941500 - MIR SINE MIR 0 262 159 2198 113 3 10 chr1 20722853 20723162 -221941191 + AluSx SINE Alu 1 307 -5 597 312 13 39 chr1 20723162 20723281 -221941072 - MIR SINE MIR -103 159 38 509 307 23 17 chr1 20724083 20724259 -221940094 + MIR SINE MIR 10 186 -76 463 264 110 52 chr1 20724453 20724608 -221939745 + MER5A DNA MER1_type 26 189 0 474 323 90 27 chr1 20725013 20725236 -221939117 + MIR SINE MIR 12 248 -14 270 263 119 62 chr1 20725396 20725556 -221938797 - L2 LINE L2 -13 3300 3132 1011 185 12 18 chr1 20725563 20725814 -221938539 + AluJb SINE Alu 1 303 -9 257 235 0 0 chr1 20725861 20725912 -221938441 - L2 LINE L2 -257 3056 3006 909 120 0 8 chr1 20725941 20726066 -221938287 + FLAM_A SINE Alu 11 134 -8 1142 289 158 15 chr1 20726312 20727098 -221937255 - L2 LINE L2 -8 3305 2420 2416 92 0 22 chr1 20727101 20727418 -221936935 - AluSx SINE Alu -2 310 1 224 277 0 46 chr1 20728163 20728228 -221936125 - MER5A DNA MER1_type -107 82 21 215 252 269 0 chr1 20728409 20728528 -221935825 - L2 LINE L2 -1 3312 3162 1661 167 219 0 chr1 20728646 20729006 -221935347 + MLT1D LTR MaLR 12 450 -55 1337 83 0 39 chr1 20729022 20729203 -221935150 - AluSq SINE Alu -120 193 20 768 162 0 37 chr1 20729377 20729513 -221934840 - FLAM_A SINE Alu -4 138 8 749 279 83 53 chr1 20729559 20729959 -221934394 - L1ME4a LINE L1 -265 5856 5444 2023 135 7 14 chr1 20729969 20730266 -221934087 - AluJb SINE Alu -17 295 1 460 253 25 86 chr1 20730705 20730817 -221933536 + MIR3 SINE MIR 42 144 -64 1999 114 40 4 chr1 20730817 20731111 -221933242 + AluSx SINE Alu 2 305 0 460 253 25 86 chr1 20731111 20731159 -221933194 + MIR3 SINE MIR 144 193 -15 555 360 30 5 chr1 20731221 20731421 -221932932 + MIR SINE MIR 47 251 -11 888 259 15 10 chr1 20732089 20732290 -221932063 + MIR SINE MIR 61 262 0 434 297 43 81 chr1 20732442 20732651 -221931702 + MIR3 SINE MIR 1 201 -7 571 268 93 21 chr1 20732740 20732934 -221931419 + MIR SINE MIR 44 251 -11 2514 78 0 25 chr1 20732971 20733291 -221931062 + AluSq SINE Alu 1 312 -1 283 289 282 7 chr1 20733331 20733473 -221930880 - MIR SINE MIR -14 248 68 2488 71 0 0 chr1 20734169 20734464 -221929889 - AluY SINE Alu -16 295 1 1801 148 3 31 chr1 20734625 20734915 -221929438 - AluJb SINE Alu -30 282 1 414 226 233 44 chr1 20735150 20735309 -221929044 - MER5A DNA MER1_type 0 189 1 297 304 27 27 chr1 20735329 20735477 -221928876 - L2 LINE L2 -163 3109 2962 210 276 129 103 chr1 20735761 20735877 -221928476 - MIR SINE MIR -65 143 25 480 275 96 11 chr1 20736123 20736301 -221928052 - MIR SINE MIR 0 262 70 1010 264 63 63 chr1 20736316 20736565 -221927788 - MLT1I LTR MaLR -11 398 147 2011 164 0 0 chr1 20736565 20736870 -221927483 + AluJb SINE Alu 3 307 -5 1010 264 63 63 chr1 20736870 20737018 -221927335 - MLT1I LTR MaLR -261 148 1 2151 128 3 0 chr1 20737349 20737372 -221926981 - AluSx SINE Alu -6 306 285 294 29 0 0 chr1 20737372 20737407 -221926946 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 2151 128 3 0 chr1 20737407 20737688 -221926665 - AluSx SINE Alu -27 285 1 333 174 35 70 chr1 20737881 20737967 -221926386 - MIR SINE MIR -73 189 107 267 268 82 41 chr1 20738000 20738097 -221926256 - MIR SINE MIR -19 243 143 2596 66 0 0 chr1 20739285 20739588 -221924765 - AluY SINE Alu -8 303 1 298 184 0 0 chr1 20740801 20740850 -221923503 - MIR SINE MIR -62 146 98 486 262 0 0 chr1 20740883 20741032 -221923321 + (TCCA)n Simple_repeat Simple_repeat 3 151 0 582 244 0 0 chr1 20741070 20741242 -221923111 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 605 295 202 14 chr1 20741277 20741739 -221922614 - L2 LINE L2 -28 3244 2702 434 289 35 0 chr1 20741735 20741849 -221922504 + MIR SINE MIR 75 192 -70 * 606 277 82 15 chr1 20742899 20743105 -221921248 - MIR SINE MIR -28 234 15 2156 88 0 0 chr1 20743152 20743426 -221920927 - AluSc SINE Alu 0 309 36 414 324 78 6 chr1 20743430 20743609 -221920744 - MIR SINE MIR -51 211 20 272 344 145 33 chr1 20743871 20744112 -221920241 - L2 LINE L2 -20 3252 2985 2425 90 6 6 chr1 20744194 20744505 -221919848 + AluSq SINE Alu 2 312 -1 208 248 143 114 chr1 20744710 20744815 -221919538 - MIR SINE MIR -76 132 25 513 259 16 65 chr1 20744928 20745113 -221919240 - MIR SINE MIR -51 211 36 228 365 56 0 chr1 20745549 20745656 -221918697 - L2 LINE L2 -43 3229 3117 257 178 0 0 chr1 20745663 20745708 -221918645 - MLT1H LTR MaLR -4 545 501 278 299 201 33 chr1 20745782 20746056 -221918297 - MLT1H LTR MaLR -210 339 20 589 204 132 0 chr1 20747077 20747229 -221917124 - MLT1J LTR MaLR -7 504 333 858 202 45 17 chr1 20747316 20747494 -221916859 - MLT1J LTR MaLR -326 185 3 302 203 16 0 chr1 20747590 20747654 -221916699 - MLT1J LTR MaLR -37 474 410 500 190 50 0 chr1 20747678 20747778 -221916575 - MLT1C LTR MaLR 0 505 401 341 277 85 0 chr1 20747820 20747950 -221916403 - MLT1J LTR MaLR -359 152 12 813 213 195 46 chr1 20749134 20749462 -221914891 - MLT1C LTR MaLR -83 384 8 1762 129 0 0 chr1 20749810 20750066 -221914287 + THE1B LTR MaLR 1 256 -108 234 315 34 0 chr1 20750064 20750153 -221914200 - MLT1H1 LTR MaLR -7 548 457 * 530 219 24 14 chr1 20750800 20750971 -221913382 + MIR SINE MIR 15 191 -71 259 362 71 0 chr1 20751088 20751215 -221913138 + L2 LINE L2 3116 3251 -21 695 260 91 0 chr1 20751290 20751498 -221912855 - MIR SINE MIR -33 229 3 216 253 0 0 chr1 20751814 20751889 -221912464 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 239 204 0 chr1 20752060 20752148 -221912205 + L2 LINE L2 2946 3051 -221 848 246 91 0 chr1 20752211 20752431 -221911922 - MIR SINE MIR -22 240 1 199 234 16 47 chr1 20752611 20752675 -221911678 + MER5B DNA MER1_type 103 164 -14 336 230 27 0 chr1 20752695 20752769 -221911584 + L2 LINE L2 3170 3245 -27 195 167 0 0 chr1 20752743 20752773 -221911580 + MIR SINE MIR 216 245 -17 * 2127 115 0 7 chr1 20752953 20753248 -221911105 - AluSx SINE Alu -19 293 1 1482 186 0 32 chr1 20753512 20753856 -221910497 - pTR5 LTR ERV1 -1370 1068 736 437 246 223 39 chr1 20753856 20754129 -221910224 - L1MC4 LINE L1 -799 7243 6905 1557 143 0 16 chr1 20754129 20754373 -221909980 - AluSx SINE Alu -9 303 64 437 246 223 39 chr1 20754373 20754408 -221909945 - L1MC4 LINE L1 -1137 6905 6878 2319 106 0 0 chr1 20754412 20754714 -221909639 - AluY SINE Alu -9 302 1 559 202 59 46 chr1 20754744 20754788 -221909565 - L1MC4 LINE L1 -1280 6528 6486 2330 87 37 0 chr1 20754788 20755088 -221909265 - AluY SINE Alu 0 311 1 559 202 59 46 chr1 20755088 20755594 -221908759 - L1MC4 LINE L1 -1322 6486 6017 431 149 0 0 chr1 20755594 20755661 -221908692 - MLT1E LTR MaLR 0 593 527 2471 82 3 0 chr1 20755663 20755966 -221908387 + AluSp SINE Alu 1 304 -9 612 225 153 14 chr1 20756069 20756278 -221908075 - MLT1E LTR MaLR -300 293 56 771 231 40 0 chr1 20756317 20756516 -221907837 - L1MC4a LINE L1 -1787 6021 5815 1319 274 14 0 chr1 20756596 20756943 -221907410 - L1MC4a LINE L1 -1993 5815 5464 540 316 57 53 chr1 20756977 20757120 -221907233 - L2 LINE L2 -5 3267 3121 222 118 0 0 chr1 20757120 20757154 -221907199 + (CA)n Simple_repeat Simple_repeat 1 34 0 540 316 57 53 chr1 20757154 20757292 -221907061 - L2 LINE L2 -151 3121 2985 4313 155 31 25 chr1 20757409 20758243 -221906110 - L1MC1 LINE L1 -1 6332 5494 1645 108 0 0 chr1 20758243 20758474 -221905879 + LOR1a LTR ERV1 1 231 -266 6850 106 22 13 chr1 20758474 20759522 -221904831 + MER11C LTR ERVK 1 1057 -14 1608 181 0 0 chr1 20759563 20759833 -221904520 + LOR1a LTR ERV1 228 497 0 827 153 25 45 chr1 20759833 20759909 -221904444 - L1MC1 LINE L1 -2545 5497 5421 2178 130 0 0 chr1 20759909 20760208 -221904145 - AluSx SINE Alu -13 299 1 827 153 25 45 chr1 20760208 20760323 -221904030 - L1MC1 LINE L1 -2621 5421 5308 1383 103 5 15 chr1 20760323 20760526 -221903827 - L1PA8 LINE L1 -1 6171 5971 19050 132 23 35 chr1 20760526 20762180 -221902173 - L1P3 LINE L1 -2123 4338 2665 214 29 57 0 chr1 20762180 20762215 -221902138 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 19050 132 23 35 chr1 20762215 20764759 -221899594 - L1P3 LINE L1 -3796 2665 74 8480 157 24 24 chr1 20764766 20766242 -221898111 + L1P LINE L1 11 1486 -4660 3992 107 0 4 chr1 20766242 20766755 -221897598 + MER9 LTR ERVK 1 511 0 4678 69 7 5 chr1 20766755 20767346 -221897007 + HERVK9 LTR ERVK 1 592 -5324 34620 73 7 2 chr1 20767346 20771698 -221892655 + HERVK9 LTR ERVK 1268 5641 -275 2038 86 71 0 chr1 20771764 20772046 -221892307 + HERVK9 LTR ERVK 5635 5916 0 3848 118 0 4 chr1 20772050 20772559 -221891794 + MER9 LTR ERVK 5 511 0 25673 72 3 0 chr1 20772559 20775911 -221888442 + L1PA6 LINE L1 1482 4843 -1303 5844 50 1 1 chr1 20775923 20776602 -221887751 + L1PA6 LINE L1 5476 6154 0 660 107 0 0 chr1 20776607 20776691 -221887662 - L1P3 LINE L1 -6372 89 6 292 184 0 0 chr1 20776697 20776778 -221887575 - L1M LINE L1 -844 5302 5228 2476 153 20 5 chr1 20777130 20777528 -221886825 - MER66B LTR ERV1 0 486 83 386 168 0 32 chr1 20777756 20777851 -221886502 + (CACCAT)n Simple_repeat Simple_repeat 6 97 0 329 297 82 47 chr1 20778064 20778214 -221886139 - L2 LINE L2 -58 3255 3112 2475 95 0 0 chr1 20778214 20778520 -221885833 + AluSg SINE Alu 1 306 -4 329 297 82 47 chr1 20778520 20778773 -221885580 - L2 LINE L2 -201 3112 2838 708 248 93 102 chr1 20779426 20779487 -221884866 - MLT1H LTR MaLR -5 544 484 2258 106 0 20 chr1 20779487 20779790 -221884563 - AluSx SINE Alu -15 297 1 708 248 93 102 chr1 20779790 20780277 -221884076 - MLT1H LTR MaLR -65 484 1 1227 180 14 18 chr1 20780334 20780551 -221883802 - MER58A DNA MER1_type -8 216 1 379 213 148 19 chr1 20780683 20780791 -221883562 - L2 LINE L2 0 3313 3192 348 285 105 81 chr1 20780792 20781210 -221883143 - MLT1K LTR MaLR -20 568 141 619 272 12 23 chr1 20781508 20781681 -221882672 - MIR3 SINE MIR -19 189 19 462 211 22 11 chr1 20781878 20781968 -221882385 + MIR SINE MIR 25 115 -147 2061 89 0 28 chr1 20782193 20782498 -221881855 + AluSq SINE Alu 11 307 0 1143 233 49 89 chr1 20782626 20782904 -221881449 - MLT1J1 LTR MaLR -2 444 229 3696 78 13 0 chr1 20782904 20783368 -221880985 - L1PA13 LINE L1 -4 6159 5690 1143 233 49 89 chr1 20783368 20783548 -221880805 - MLT1J1 LTR MaLR -217 229 43 295 296 171 45 chr1 20783606 20783782 -221880571 + L2 LINE L2 3115 3312 -1 22 80 0 0 chr1 20783787 20783837 -221880516 + AT_rich Low_complexity Low_complexity 1 50 0 279 251 90 63 chr1 20783837 20784056 -221880297 - MLT1K LTR MaLR -12 603 369 441 129 57 0 chr1 20784717 20784787 -221879566 - MER66B LTR ERV1 -412 74 1 539 308 49 31 chr1 20784787 20785073 -221879280 - LTR16B LTR ERVL -152 312 22 1381 247 12 6 chr1 20785199 20785535 -221878818 + L1ME2 LINE L1 5505 5842 -322 292 287 119 20 chr1 20785536 20785637 -221878716 - L1ME2 LINE L1 -69 6095 5985 529 178 0 22 chr1 20785690 20785780 -221878573 - MSTC LTR MaLR -340 88 1 705 186 21 7 chr1 20785781 20785921 -221878432 - MSTC-int LTR MaLR -1 1734 1593 3385 163 25 38 chr1 20785995 20786656 -221877697 + MER54A LTR ERVL 42 901 0 1965 114 37 0 chr1 20786681 20787008 -221877345 + AluSg SINE Alu 1 337 0 1240 128 0 0 chr1 20787052 20787224 -221877129 + AluSc SINE Alu 1 172 -137 10613 169 48 30 chr1 20787342 20787540 -221876813 - L1 LINE L1 -1070 6495 6302 1613 171 17 119 chr1 20787540 20787943 -221876410 - MLT1A1 LTR MaLR 0 365 4 7453 233 33 38 chr1 20787947 20789690 -221874663 - MLT1A1-int LTR MaLR -1 1734 1 1786 183 5 92 chr1 20789690 20790090 -221874263 - MLT1A1 LTR MaLR 0 365 1 10613 169 48 30 chr1 20790090 20792166 -221872187 - L1 LINE L1 -1264 6301 4174 359 247 34 0 chr1 20792162 20792251 -221872102 - L1 LINE L1 -3630 3935 3844 * 403 109 0 0 chr1 20792255 20792310 -221872043 - Tigger2 DNA MER2_type -81 2637 2583 968 157 6 0 chr1 20792312 20792471 -221871882 + Tigger2 DNA MER2_type 2510 2669 -49 2707 229 60 26 chr1 20792578 20792830 -221871523 - L1 LINE L1 -4425 3140 2898 1988 136 14 0 chr1 20792830 20793116 -221871237 - AluSx SINE Alu -22 290 1 2707 229 60 26 chr1 20793116 20793693 -221870660 - L1 LINE L1 -4667 2898 2283 5992 154 37 16 chr1 20793697 20794972 -221869381 - L1MA5 LINE L1 -5 6295 5048 204 97 0 0 chr1 20794972 20795003 -221869350 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1788 171 0 4 chr1 20795009 20795284 -221869069 - AluJb SINE Alu -38 274 1 5992 154 37 16 chr1 20795284 20795522 -221868831 - L1MA5 LINE L1 -1256 5044 4762 751 231 0 0 chr1 20795535 20795665 -221868688 - FLAM_C SINE Alu -12 131 2 4800 183 29 23 chr1 20795666 20796218 -221868135 - L1MA5 LINE L1 -1372 4774 4212 2038 96 3 11 chr1 20796218 20796500 -221867853 + AluSc SINE Alu 22 301 -8 4800 183 29 23 chr1 20796500 20796983 -221867370 - L1MA5 LINE L1 -1934 4212 3733 2575 57 0 0 chr1 20797583 20797884 -221866469 + AluY SINE Alu 2 302 -9 64 0 0 13 chr1 20797908 20797923 -221866430 + AT_rich Low_complexity Low_complexity 1 15 -59 2704 109 3 21 chr1 20797923 20798300 -221866053 - L1PB1 LINE L1 0 6867 6498 64 0 0 13 chr1 20798300 20798359 -221865994 + AT_rich Low_complexity Low_complexity 15 74 0 808 128 38 0 chr1 20798359 20798492 -221865861 - L1PB1 LINE L1 -350 6517 6380 13310 192 17 22 chr1 20798605 20799028 -221865325 - L1PB1 LINE L1 -727 6140 5716 1806 152 35 3 chr1 20799028 20799318 -221865035 - AluSx SINE Alu -13 299 1 13310 192 17 22 chr1 20799318 20799929 -221864424 - L1PB1 LINE L1 -1151 5716 5103 180 0 0 0 chr1 20799929 20799949 -221864404 + (TG)n Simple_repeat Simple_repeat 1 20 0 13310 192 17 22 chr1 20799949 20800869 -221863484 - L1PB1 LINE L1 -1764 5103 4179 6553 96 12 5 chr1 20800869 20800928 -221863425 - L1PB1 LINE L1 -1 6150 6093 2493 79 0 0 chr1 20800928 20801231 -221863122 - AluY SINE Alu -8 303 1 6553 96 12 5 chr1 20801231 20802509 -221861844 - L1PB1 LINE L1 -58 6093 4823 13310 192 17 22 chr1 20802509 20803653 -221860700 - L1PB1 LINE L1 -2688 4179 3061 1349 175 18 4 chr1 20803664 20804002 -221860351 - LTR46 LTR ERV1 -67 393 5 2369 123 6 6 chr1 20804002 20804352 -221860001 - LTR46-int LTR ERV1 0 6985 6636 2815 149 124 8 chr1 20804352 20804874 -221859479 - LTR1 LTR ERV1 0 785 203 1186 123 106 13 chr1 20804970 20805206 -221859147 - LTR1 LTR ERV1 -527 258 1 2870 142 40 36 chr1 20805209 20805563 -221858790 - LTR46-int LTR ERV1 -300 6685 6327 4947 166 18 36 chr1 20805563 20806550 -221857803 - LTR5 LTR ERVK 0 969 1 2870 142 40 36 chr1 20806550 20806722 -221857631 - LTR46-int LTR ERV1 -658 6327 6157 * 24490 104 12 20 chr1 20806710 20810306 -221854047 - LTR46-int LTR ERV1 -1052 5933 2366 1225 140 58 2 chr1 20810303 20810637 -221853716 - LTR46-int LTR ERV1 -6532 453 1 * 1636 163 21 25 chr1 20810638 20811047 -221853306 - LTR46 LTR ERV1 0 460 1 17410 116 36 9 chr1 20811047 20812185 -221852168 - L1PB1 LINE L1 -3797 3065 1960 2192 110 7 10 chr1 20812185 20812495 -221851858 - AluSp SINE Alu -4 309 1 17410 116 36 9 chr1 20812495 20814059 -221850294 - L1PB1 LINE L1 -4902 1960 288 1594 164 46 0 chr1 20814059 20814322 -221850031 + AluJo SINE Alu 23 297 -15 2069 195 43 12 chr1 20814327 20814743 -221849610 - L1M2a LINE L1 -5378 1729 1301 180 0 0 0 chr1 20815199 20815219 -221849134 + (GA)n Simple_repeat Simple_repeat 1 20 0 245 114 0 23 chr1 20815629 20815673 -221848680 - L1M2a LINE L1 -6844 186 144 737 196 43 0 chr1 20815733 20815871 -221848482 - L1M2a LINE L1 -6885 145 2 626 197 143 68 chr1 20815872 20816106 -221848247 - L1MC3 LINE L1 -903 6882 6599 294 50 0 0 chr1 20816106 20816146 -221848207 + (CA)n Simple_repeat Simple_repeat 2 41 0 626 197 143 68 chr1 20816146 20816196 -221848157 - L1MC3 LINE L1 -1186 6599 6554 667 91 10 20 chr1 20816213 20816312 -221848041 + MER4A LTR ERV1 1 98 -566 1970 142 168 20 chr1 20816312 20816664 -221847689 + MER4A LTR ERV1 261 664 0 877 106 183 0 chr1 20816667 20816809 -221847544 + MER4A-int LTR ERV1 1 168 -6430 1057 103 26 6 chr1 20816809 20816965 -221847388 - LTR7 LTR ERV1 0 450 292 5198 142 5 6 chr1 20816975 20817948 -221846405 - HERVH LTR ERV1 -2297 4232 3800 * 17220 137 4 33 chr1 20817936 20821311 -221843042 - HERVH LTR ERV1 -4126 3587 1 540 114 0 25 chr1 20821334 20821413 -221842940 + LTR7 LTR ERV1 374 450 0 1825 139 8 102 chr1 20821413 20821936 -221842417 + LTR7-int LTR ERV1 164 836 -5762 1269 232 49 18 chr1 20821992 20822321 -221842032 + LTR7-int LTR ERV1 1861 3043 -4170 6105 91 65 31 chr1 20822341 20823247 -221841106 + MER4A-int LTR ERV1 194 1068 -5530 312 27 0 0 chr1 20823247 20823284 -221841069 + (TG)n Simple_repeat Simple_repeat 2 38 0 6105 91 65 31 chr1 20823284 20824034 -221840319 + MER4A-int LTR ERV1 1068 2495 -4103 1350 162 70 4 chr1 20824034 20824275 -221840078 - LTR8 LTR ERV1 -434 257 1 4396 121 75 26 chr1 20824275 20824971 -221839382 + MER4A-int LTR ERV1 2737 3488 -3110 2476 101 36 20 chr1 20824971 20825329 -221839024 + THE1B LTR MaLR 1 364 0 4396 121 75 26 chr1 20825329 20825531 -221838822 + MER4A-int LTR ERV1 3488 3679 -2919 15768 88 71 51 chr1 20825535 20827640 -221836713 + MER4A-int LTR ERV1 3840 6087 -511 629 13 0 0 chr1 20827640 20827716 -221836637 + AluY SINE Alu 229 304 -8 15768 88 71 51 chr1 20827716 20828237 -221836116 + MER4A-int LTR ERV1 6087 6596 -2 643 101 10 20 chr1 20828244 20828343 -221836010 + MER4A LTR ERV1 1 98 -566 1684 137 161 75 chr1 20828343 20828715 -221835638 + MER4A LTR ERV1 261 664 0 1264 230 51 70 chr1 20828715 20829246 -221835107 - L1MC4a LINE L1 -1268 6540 6020 717 195 27 0 chr1 20829274 20829423 -221834930 - L1MC2 LINE L1 -139 6205 6053 302 147 0 189 chr1 20829441 20829536 -221834817 - MLT1E LTR MaLR -1 592 516 772 278 94 8 chr1 20829622 20829856 -221834497 - MLT1E LTR MaLR -300 293 40 557 289 15 5 chr1 20829887 20830084 -221834269 - L1MC2 LINE L1 -1798 6010 5812 1383 255 37 0 chr1 20830157 20830506 -221833847 - L1MC2 LINE L1 -1983 5825 5464 526 327 79 35 chr1 20830576 20830743 -221833610 - L2 LINE L2 -5 3308 3150 2024 287 26 10 chr1 20830743 20831360 -221832993 + MLT2E LTR ERVL 1 627 -1 526 327 79 35 chr1 20831360 20831510 -221832843 - L2 LINE L2 -163 3150 2977 564 222 30 0 chr1 20831618 20831753 -221832600 - L1MC1 LINE L1 -1 6332 6194 687 184 0 0 chr1 20831754 20831863 -221832490 - L1PA13 LINE L1 -6678 109 1 4007 241 8 2 chr1 20831898 20832918 -221831435 - L1MC2 LINE L1 -2158 3988 2963 567 162 9 0 chr1 20832931 20833042 -221831311 - L1MC2 LINE L1 -3789 2357 2246 2143 88 0 0 chr1 20833043 20833315 -221831038 - AluSx SINE Alu -36 276 5 3348 206 12 4 chr1 20833317 20834081 -221830272 - L1MEc LINE L1 -3166 2980 2242 299 129 8 2 chr1 20834412 20834661 -221829692 + AluSx SINE Alu 1 301 0 1510 182 37 3 chr1 20834671 20834967 -221829386 + AluJo SINE Alu 1 306 -6 275 315 9 18 chr1 20835407 20835518 -221828835 + LTR67 LTR ERVL 354 463 -94 2303 103 3 0 chr1 20835762 20836073 -221828280 - AluSx SINE Alu 0 312 1 2018 100 62 0 chr1 20836246 20836537 -221827816 - AluSp SINE Alu -4 309 1 1945 147 3 7 chr1 20836825 20837131 -221827222 + AluJb SINE Alu 3 307 -5 1379 156 8 9 chr1 20837388 20837766 -221826587 + MSTA LTR MaLR 1 428 0 765 152 0 0 chr1 20838033 20838145 -221826208 + AluJb SINE Alu 2 113 -199 180 0 0 0 chr1 20838154 20838174 -221826179 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 925 178 19 0 chr1 20838570 20838727 -221825626 + FRAM SINE Alu 1 160 -6 2125 132 0 3 chr1 20839812 20840122 -221824231 + AluSx SINE Alu 1 309 -3 863 163 0 0 chr1 20840132 20840273 -221824080 + FLAM_C SINE Alu 1 141 -2 453 266 122 11 chr1 20840329 20840494 -221823859 + MER5A DNA MER1_type 4 189 0 3737 148 53 34 chr1 20840625 20841380 -221822973 - L1MC2 LINE L1 0 6344 5576 766 176 0 8 chr1 20841382 20841507 -221822846 + FAM SINE Alu 1 124 -61 1882 162 53 0 chr1 20841517 20841943 -221822410 - L1MC2 LINE L1 -743 5403 5133 745 253 0 6 chr1 20841945 20842103 -221822250 - MER63 DNA MER1_type -279 783 1 1423 211 4 0 chr1 20842245 20842525 -221821828 + AluJo SINE Alu 1 281 -31 1521 173 14 27 chr1 20842525 20842819 -221821534 - AluJb SINE Alu -20 292 2 399 276 58 111 chr1 20842842 20842926 -221821427 + L1ME LINE L1 4672 4759 -1387 2028 125 3 3 chr1 20842926 20843223 -221821130 + AluSx SINE Alu 1 297 -15 399 276 58 111 chr1 20843223 20843357 -221820996 + L1ME LINE L1 4759 4899 -1247 2134 108 3 0 chr1 20843357 20843662 -221820691 + AluSq SINE Alu 1 306 -7 399 276 58 111 chr1 20843662 20843972 -221820381 + L1ME LINE L1 4899 5166 -980 2241 84 7 0 chr1 20843972 20844271 -221820082 - AluSp SINE Alu -12 301 1 399 276 58 111 chr1 20844271 20844360 -221819993 + L1ME LINE L1 5166 5258 -888 425 293 125 32 chr1 20844494 20844779 -221819574 + L1ME LINE L1 5319 5630 -532 * 839 216 22 120 chr1 20844762 20844913 -221819440 + L1MC4 LINE L1 7446 7610 -432 1570 134 58 11 chr1 20844913 20845174 -221819179 + AluJb SINE Alu 3 275 -37 495 0 0 0 chr1 20845184 20845239 -221819114 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 839 216 22 120 chr1 20845239 20845433 -221818920 + L1MC4 LINE L1 7619 7767 -275 203 167 0 21 chr1 20846494 20846542 -221817811 + CT-rich Low_complexity Low_complexity 4 50 0 519 352 64 16 chr1 20846546 20846796 -221817557 + MIR SINE MIR 1 262 0 291 212 159 71 chr1 20846793 20846906 -221817447 - L2 LINE L2 -1 3271 3149 * 339 276 31 31 chr1 20846938 20847036 -221817317 - L2 LINE L2 -36 3236 3139 1393 196 23 123 chr1 20847186 20847346 -221817007 + L2 LINE L2 2912 3086 -227 1908 135 10 3 chr1 20847346 20847643 -221816710 + AluSx SINE Alu 1 299 -13 1393 196 23 123 chr1 20847643 20847922 -221816431 + L2 LINE L2 3086 3307 -6 234 128 0 0 chr1 20848000 20848039 -221816314 + (GA)n Simple_repeat Simple_repeat 2 40 0 642 274 169 58 chr1 20849074 20849121 -221815232 - L2 LINE L2 0 3313 3273 1951 100 50 0 chr1 20849121 20849402 -221814951 + AluSx SINE Alu 1 295 -17 642 274 169 58 chr1 20849402 20849697 -221814656 - L2 LINE L2 -40 3273 2933 581 309 63 23 chr1 20850184 20850485 -221813868 - L3 LINE CR1 -125 1452 1140 657 238 122 9 chr1 20850922 20851136 -221813217 - MIR SINE MIR 0 262 25 412 282 44 127 chr1 20851233 20851380 -221812973 - Charlie8 DNA MER1_type -2154 263 144 2101 103 13 10 chr1 20851380 20851691 -221812662 - AluSx SINE Alu 0 312 1 412 282 44 127 chr1 20851691 20851795 -221812558 - Charlie8 DNA MER1_type -2273 144 33 297 358 18 9 chr1 20851871 20851980 -221812373 - L3 LINE CR1 -1048 529 420 497 288 101 41 chr1 20852004 20852223 -221812130 + MIR SINE MIR 17 248 -14 391 295 49 0 chr1 20852603 20852725 -221811628 - L2 LINE L2 -1 3312 3185 218 105 26 0 chr1 20852869 20852907 -221811446 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 448 221 159 0 chr1 20852977 20853090 -221811263 - L2 LINE L2 -3 3269 3139 493 313 25 10 chr1 20853116 20853314 -221811039 - MIR SINE MIR -13 249 49 221 352 125 5 chr1 20853452 20853668 -221810685 - L2 LINE L2 -1090 2224 1983 367 286 134 35 chr1 20854002 20854173 -221810180 + L2 LINE L2 3116 3303 -10 1844 122 3 26 chr1 20854345 20854656 -221809697 + AluJb SINE Alu 1 304 -8 273 250 55 42 chr1 20854785 20854985 -221809368 - MIR SINE MIR -13 249 3 658 206 0 28 chr1 20855015 20855156 -221809197 - AluJb SINE Alu 0 312 176 375 256 90 21 chr1 20855207 20855364 -221808989 - MIR SINE MIR -63 145 20 1696 154 7 0 chr1 20855844 20856123 -221808230 + AluSx SINE Alu 25 305 -7 1229 238 80 3 chr1 20856877 20857213 -221807140 - MER74B LTR ERVL -26 596 235 3939 140 52 25 chr1 20857236 20857307 -221807046 - MER50 LTR ERV1 -20 714 646 1863 97 34 4 chr1 20857307 20857574 -221806779 + AluSc SINE Alu 16 290 -19 3939 140 52 25 chr1 20857574 20858197 -221806156 - MER50 LTR ERV1 -88 646 1 582 212 55 27 chr1 20858197 20858343 -221806010 - MER74B LTR ERVL -414 208 59 310 170 0 0 chr1 20858412 20858465 -221805888 + MIR SINE MIR 90 142 -66 468 308 21 1 chr1 20859272 20859417 -221804936 + MIR SINE MIR 36 181 -63 470 218 126 76 chr1 20859421 20859683 -221804670 - ORSL DNA AcHobo 0 275 1 208 369 115 0 chr1 20859719 20859841 -221804512 - L2 LINE L2 -22 3250 3115 349 287 62 16 chr1 20860439 20860568 -221803785 + MIR3 SINE MIR 2 136 -72 439 286 8 8 chr1 20860969 20861088 -221803265 + MIR3 SINE MIR 78 196 -12 577 313 57 22 chr1 20861217 20861447 -221802906 - MIR SINE MIR -23 239 2 278 321 62 0 chr1 20861794 20861906 -221802447 - MIR SINE MIR -60 202 84 1411 251 161 20 chr1 20861916 20862427 -221801926 - MLT1G1 LTR MaLR -1 594 12 1229 189 41 5 chr1 20862432 20862688 -221801665 + L1MC3 LINE L1 6376 6669 -1174 325 188 165 0 chr1 20862689 20862774 -221801579 + L1MC3 LINE L1 7655 7753 -32 604 131 131 0 chr1 20862808 20862907 -221801446 + MER2 DNA MER2_type 1 112 -233 1016 56 0 0 chr1 20862921 20863046 -221801307 - AluY SINE Alu -19 292 168 1492 170 30 108 chr1 20863062 20863432 -221800921 + L1MC3 LINE L1 6616 6956 -829 1553 129 60 143 chr1 20863435 20863596 -221800757 + L1MC3 LINE L1 7355 7528 -257 2207 91 3 10 chr1 20863596 20863894 -221800459 + AluSp SINE Alu 1 296 -17 1553 129 60 143 chr1 20863894 20864167 -221800186 + L1MC3 LINE L1 7528 7753 -32 1302 180 84 50 chr1 20864201 20864323 -221800030 + MER2 DNA MER2_type 1 117 -228 1745 144 13 17 chr1 20864323 20864621 -221799732 - AluJb SINE Alu -15 297 1 1302 180 84 50 chr1 20864621 20864820 -221799533 + MER2 DNA MER2_type 117 333 -12 1115 247 20 0 chr1 20864868 20865119 -221799234 - MLT1J2 LTR MaLR -156 294 39 192 317 125 17 chr1 20865605 20865725 -221798628 - MIR SINE MIR -50 212 80 213 298 0 0 chr1 20865855 20865902 -221798451 + L2 LINE L2 3139 3185 -87 305 280 32 40 chr1 20866915 20867040 -221797313 + MIR SINE MIR 6 129 -133 404 317 102 12 chr1 20867840 20868007 -221796346 - MIR SINE MIR -24 184 2 512 168 10 0 chr1 20868670 20868771 -221795582 + CT-rich Low_complexity Low_complexity 1 102 0 1842 152 39 0 chr1 20868771 20869054 -221795299 - AluSq SINE Alu -19 294 1 324 358 54 0 chr1 20869094 20869242 -221795111 - MIR SINE MIR -86 176 21 1499 162 16 8 chr1 20869250 20869497 -221794856 - AluJo SINE Alu -19 293 45 1345 242 108 61 chr1 20869602 20870225 -221794128 + MLT2F LTR ERVL 1 652 -11 686 238 0 0 chr1 20870567 20870689 -221793664 + FLAM_C SINE Alu 2 123 -20 4031 248 91 35 chr1 20870726 20871997 -221792356 + HERVL-F LTR ERVL 2417 3759 -2005 315 226 160 19 chr1 20872165 20872184 -221792169 + HERVL-F LTR ERVL 5534 5654 0 415 161 195 0 chr1 20872184 20872271 -221792082 + Ricksha DNA DNA 243 346 -908 1448 268 100 48 chr1 20872273 20872901 -221791452 + MLT2F LTR ERVL 3 663 0 317 176 73 0 chr1 20872914 20872982 -221791371 + L2 LINE L2 3200 3272 0 209 265 20 0 chr1 20873007 20873056 -221791297 - L2 LINE L2 -86 3186 3137 316 356 113 0 chr1 20873898 20874092 -221790261 - MIR SINE MIR 0 262 47 268 233 33 0 chr1 20874147 20874207 -221790146 + L2 LINE L2 3194 3255 -17 2359 97 0 0 chr1 20874609 20874898 -221789455 + AluY SINE Alu 1 289 -22 240 311 98 16 chr1 20874910 20875032 -221789321 + MIR3 SINE MIR 7 138 -70 319 206 27 0 chr1 20875044 20875117 -221789236 - MER112 DNA MER1_type -1 259 185 2080 164 0 0 chr1 20875451 20875763 -221788590 + AluSx SINE Alu 1 312 0 556 380 32 5 chr1 20875947 20876168 -221788185 + MIR SINE MIR 24 250 -12 190 136 318 0 chr1 20876687 20876731 -221787622 - L2 LINE L2 -9 3263 3206 2035 155 0 0 chr1 20876851 20877141 -221787212 + AluJo SINE Alu 9 298 -14 198 282 0 64 chr1 20877442 20877520 -221786833 - MER5A DNA MER1_type -76 113 41 1597 194 6 38 chr1 20877859 20878173 -221786180 + AluJb SINE Alu 1 304 -8 335 287 20 10 chr1 20878865 20878966 -221785387 - MIR SINE MIR -63 145 44 240 219 57 29 chr1 20879127 20879232 -221785121 + LTR48 LTR ERV1 629 736 -51 1169 155 0 11 chr1 20879251 20879438 -221784915 + AluJb SINE Alu 122 306 -6 418 196 11 0 chr1 20879725 20879817 -221784536 - MER113 DNA MER1_type? -302 219 127 2174 129 0 13 chr1 20879837 20880168 -221784185 + AluSx SINE Alu 1 312 0 211 220 51 51 chr1 20880473 20880532 -221783821 + MER5A DNA MER1_type 7 65 -124 3202 118 39 32 chr1 20880564 20880764 -221783589 - MER4B LTR ERV1 -36 574 377 4452 78 0 0 chr1 20880764 20881318 -221783035 + MER41A LTR ERV1 1 554 0 3202 118 39 32 chr1 20881318 20881687 -221782666 - MER4B LTR ERV1 -233 377 1 397 267 8 38 chr1 20881687 20881818 -221782535 + MER5A DNA MER1_type 63 189 0 2705 175 75 9 chr1 20881837 20882381 -221781972 + LTR26E LTR ERV1 39 618 -4 1821 99 34 0 chr1 20882510 20882743 -221781610 - AluSx SINE Alu -37 275 35 211 276 61 41 chr1 20882745 20882843 -221781510 + MIR SINE MIR 65 164 -98 277 240 58 58 chr1 20883424 20883480 -221780873 - MIR SINE MIR -100 162 104 4274 83 5 2 chr1 20883480 20884032 -221780321 + MER41A LTR ERV1 1 554 0 277 240 58 58 chr1 20884032 20884079 -221780274 - MIR SINE MIR -157 105 59 189 0 0 0 chr1 20884109 20884130 -221780223 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 212 403 33 9 chr1 20884271 20884482 -221779871 - L2 LINE L2 -179 3134 2919 27 0 0 0 chr1 20884571 20884598 -221779755 + AT_rich Low_complexity Low_complexity 1 27 0 426 228 163 42 chr1 20885078 20885239 -221779114 + MIR SINE MIR 6 183 -65 278 293 28 28 chr1 20885564 20885670 -221778683 - L2 LINE L2 0 3313 3208 2339 58 25 0 chr1 20885909 20886220 -221778133 + AluY SINE Alu 1 318 0 405 291 55 6 chr1 20886301 20886483 -221777870 + MLT1L LTR MaLR 372 562 -53 1809 151 42 0 chr1 20887008 20887293 -221777060 + AluJb SINE Alu 7 303 -9 294 47 93 0 chr1 20887297 20887340 -221777013 - FLAM SINE Alu -6 127 81 2125 116 3 0 chr1 20887441 20887787 -221776566 - AluSq SINE Alu 0 347 1 634 165 71 8 chr1 20887787 20887914 -221776439 - L1MC1 LINE L1 -8 6325 6191 863 297 34 36 chr1 20888141 20888585 -221775768 - LTR16A1 LTR ERVL -14 443 1 206 283 112 105 chr1 20888614 20888900 -221775453 - L2 LINE L2 -7 3265 2978 245 413 8 0 chr1 20889014 20889140 -221775213 - L2 LINE L2 -5 3267 3141 200 306 14 42 chr1 20889973 20890045 -221774308 - L2 LINE L2 0 3272 3203 413 250 145 0 chr1 20890259 20890383 -221773970 + MIR SINE MIR 121 262 0 263 253 172 0 chr1 20890496 20890595 -221773758 + MIR SINE MIR 35 150 -112 354 278 205 7 chr1 20890676 20890827 -221773526 - MIR SINE MIR -26 236 56 845 214 44 21 chr1 20891270 20891507 -221772846 - MIR SINE MIR -1 261 18 189 269 0 0 chr1 20891501 20891553 -221772800 + MIR SINE MIR 156 207 -55 * 223 208 338 0 chr1 20891677 20891754 -221772599 + L2 LINE L2 3191 3293 -20 347 164 0 0 chr1 20892140 20892207 -221772146 + AluJb SINE Alu 1 47 -253 * 368 151 0 0 chr1 20892202 20892255 -221772098 - AluS SINE Alu -20 280 228 1415 161 85 0 chr1 20892256 20892492 -221771861 + AluJb SINE Alu 38 293 -19 657 162 115 9 chr1 20892578 20892752 -221771601 - L1MD3 LINE L1 -4 7991 7588 262 289 44 33 chr1 20892761 20892851 -221771502 - MIR SINE MIR -151 111 21 404 323 81 50 chr1 20894065 20894263 -221770090 - MIR SINE MIR -12 250 47 185 0 0 39 chr1 20895187 20895213 -221769140 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1628 162 56 0 chr1 20895220 20895542 -221768811 - AluJo SINE Alu 0 342 6 422 288 72 97 chr1 20895562 20895863 -221768490 - L1ME4a LINE L1 -5 6116 5836 2162 111 3 0 chr1 20895863 20896152 -221768201 + AluSg1 SINE Alu 1 290 -19 422 288 72 97 chr1 20896152 20896437 -221767916 - L1ME4a LINE L1 -285 5836 5545 610 321 32 0 chr1 20897148 20897335 -221767018 + MIR SINE MIR 32 224 -38 602 264 62 70 chr1 20897357 20897615 -221766738 + MIR SINE MIR 1 256 -6 189 74 0 0 chr1 20897640 20897667 -221766686 + (CAT)n Simple_repeat Simple_repeat 3 29 0 431 209 40 125 chr1 20897688 20897858 -221766495 - L1MEc LINE L1 -5278 1118 935 2036 139 7 0 chr1 20897858 20898145 -221766208 - AluSx SINE Alu -23 289 1 431 209 40 125 chr1 20898145 20898175 -221766178 - L1MEc LINE L1 -5461 935 904 1622 160 20 67 chr1 20898175 20898257 -221766096 + MER44D DNA MER2_type 1 85 -2406 2010 128 18 0 chr1 20898257 20898558 -221765795 - AluSc SINE Alu 0 306 1 1622 160 20 67 chr1 20898558 20898830 -221765523 + MER44D DNA MER2_type 85 609 0 431 209 40 125 chr1 20898830 20898925 -221765428 - L1MEc LINE L1 -5492 904 847 305 224 0 0 chr1 20898901 20898968 -221765385 - L1ME LINE L1 -454 5736 5670 * 1805 141 0 85 chr1 20898971 20899114 -221765239 + AluJb SINE Alu 1 104 -208 2157 146 0 0 chr1 20899114 20899422 -221764931 + AluJb SINE Alu 1 308 -4 1805 141 0 85 chr1 20899422 20899597 -221764756 + AluJb SINE Alu 104 292 -20 642 264 125 5 chr1 20899906 20900114 -221764239 - MIR SINE MIR -3 259 27 198 271 62 0 chr1 20900158 20900206 -221764147 - MIR SINE MIR -84 178 128 1148 262 64 20 chr1 20900638 20901046 -221763307 + L1ME3A LINE L1 5727 6152 -18 1777 148 11 0 chr1 20901109 20901379 -221762974 + AluJo SINE Alu 21 293 -19 410 259 162 4 chr1 20901470 20901666 -221762687 + MIR SINE MIR 19 247 -15 333 331 0 44 chr1 20902012 20902148 -221762205 + MIR SINE MIR 118 247 -15 249 267 17 67 chr1 20902236 20902356 -221761997 - L2 LINE L2 -5 3267 3154 940 158 30 0 chr1 20903177 20903342 -221761011 - L1MB3 LINE L1 -215 5968 5799 2460 87 0 6 chr1 20903368 20903679 -221760674 + AluSc SINE Alu 1 309 0 300 163 68 95 chr1 20903692 20903810 -221760543 - L1MB7 LINE L1 -10 6174 6059 2128 148 0 0 chr1 20903810 20904114 -221760239 - AluJb SINE Alu -8 304 1 300 163 68 95 chr1 20904114 20904142 -221760211 - L1MB7 LINE L1 -125 6059 6032 2428 130 3 8 chr1 20904259 20904636 -221759717 + MLT1B LTR MaLR 16 390 0 232 179 0 0 chr1 20904877 20904916 -221759437 + MIR SINE MIR 116 154 -108 245 119 34 17 chr1 20905033 20905092 -221759261 - L1MB7 LINE L1 -77 6107 6048 2744 189 37 37 chr1 20905226 20905991 -221758362 - L1ME1 LINE L1 -189 5977 5214 1975 147 0 29 chr1 20905991 20906303 -221758050 - AluSx SINE Alu -9 303 1 2744 189 37 37 chr1 20906303 20906344 -221758009 - L1ME1 LINE L1 -952 5214 5175 2467 92 0 0 chr1 20906344 20906647 -221757706 - AluSq SINE Alu -10 303 1 2744 189 37 37 chr1 20906647 20906821 -221757532 - L1ME1 LINE L1 -991 5175 4992 2115 150 35 3 chr1 20906829 20907202 -221757151 - L1MB3 LINE L1 0 6183 5799 955 118 0 15 chr1 20907228 20907363 -221756990 + FLAM_C SINE Alu 1 133 0 1506 182 28 83 chr1 20907365 20907788 -221756565 - L1MB7 LINE L1 -10 6174 5775 2497 90 22 30 chr1 20907806 20908173 -221756180 - THE1B LTR MaLR 0 364 1 2279 171 20 3 chr1 20908173 20908778 -221755575 - L1MB7 LINE L1 -524 5650 5032 2155 138 0 3 chr1 20908779 20909084 -221755269 - AluSx SINE Alu -2 310 7 1296 154 0 47 chr1 20909096 20909356 -221754997 - AluJo SINE Alu 0 312 84 941 166 47 0 chr1 20909356 20909525 -221754828 - L1MB7 LINE L1 -1107 5039 4863 561 197 13 7 chr1 20909637 20909789 -221754564 + CT-rich Low_complexity Low_complexity 2 154 0 5155 224 43 35 chr1 20909792 20909974 -221754379 - L1ME1 LINE L1 -1212 4934 4755 1787 159 51 0 chr1 20909974 20910132 -221754221 - AluJo SINE Alu -22 290 111 189 0 0 0 chr1 20910132 20910153 -221754200 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1787 159 51 0 chr1 20910153 20910270 -221754083 - AluJo SINE Alu -201 111 1 5155 224 43 35 chr1 20910270 20911002 -221753351 - L1ME1 LINE L1 -1391 4755 4031 2356 98 7 0 chr1 20911002 20911307 -221753046 - AluSx SINE Alu -5 307 1 5155 224 43 35 chr1 20911307 20911753 -221752600 - L1ME1 LINE L1 -2115 4031 3556 1991 161 22 59 chr1 20911753 20912158 -221752195 + MLT1B LTR MaLR 1 390 0 5155 224 43 35 chr1 20912158 20912347 -221752006 - L1ME1 LINE L1 -2590 3556 3370 301 213 351 0 chr1 20912521 20912615 -221751738 - L1ME LINE L1 -266 5855 5729 757 167 0 8 chr1 20913687 20913813 -221750540 - FLAM_C SINE Alu -12 131 7 181 348 33 0 chr1 20913927 20914019 -221750334 - MIR SINE MIR -110 152 58 1433 204 45 48 chr1 20914229 20914627 -221749726 + MER31A LTR ERV1 89 485 0 409 232 17 57 chr1 20916810 20916987 -221747366 + (TG)n Simple_repeat Simple_repeat 2 171 0 191 111 0 22 chr1 20917010 20917055 -221747298 + (TG)n Simple_repeat Simple_repeat 2 45 0 234 222 0 0 chr1 20917401 20917446 -221746907 - MIR SINE MIR -109 153 109 337 237 54 0 chr1 20917810 20917903 -221746450 + MIR SINE MIR 45 142 -66 631 343 29 8 chr1 20918477 20918716 -221745637 + MIR SINE MIR 4 247 -15 201 328 80 24 chr1 20919476 20919601 -221744752 + L2 LINE L2 3180 3311 -2 389 256 90 15 chr1 20919908 20920041 -221744312 + MIR3 SINE MIR 34 176 -32 424 202 31 54 chr1 20920288 20920315 -221744038 + MER53 DNA DNA 1 27 -162 2050 127 0 10 chr1 20920315 20920629 -221743724 + AluSx SINE Alu 1 311 -1 424 202 31 54 chr1 20920629 20920730 -221743623 + MER53 DNA DNA 27 126 -63 23 0 0 0 chr1 20920741 20920764 -221743589 + AT_rich Low_complexity Low_complexity 1 23 0 243 146 31 167 chr1 20920771 20920805 -221743548 + MER53 DNA DNA 95 132 -57 2168 108 0 0 chr1 20920805 20921100 -221743253 - AluSc SINE Alu -14 295 1 243 146 31 167 chr1 20921100 20921125 -221743228 + MER53 DNA DNA 132 159 -30 252 0 0 0 chr1 20921125 20921153 -221743200 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 1620 150 25 4 chr1 20921153 20921427 -221742926 - AluJo SINE Alu -32 280 1 243 146 31 167 chr1 20921427 20921461 -221742892 + MER53 DNA DNA 157 177 -12 228 289 41 21 chr1 20921597 20921677 -221742676 - MER5A DNA MER1_type -83 106 25 395 266 58 53 chr1 20921677 20921865 -221742488 + MIR3 SINE MIR 4 192 -16 837 194 11 33 chr1 20922647 20922827 -221741526 + MER5A DNA MER1_type 5 180 -9 2353 80 0 3 chr1 20922967 20923269 -221741084 - AluSq SINE Alu -11 302 2 254 288 14 0 chr1 20923377 20923450 -221740903 + MIR3 SINE MIR 83 156 -52 571 241 167 0 chr1 20923451 20923613 -221740740 - MER5A DNA MER1_type 0 189 1 2331 85 3 0 chr1 20926257 20926563 -221737790 - AluSq SINE Alu -6 307 1 2630 39 0 0 chr1 20927010 20927321 -221737032 - AluY SINE Alu 0 311 1 518 274 34 34 chr1 20928214 20928422 -221735931 + MIR SINE MIR 20 227 -35 223 170 0 21 chr1 20928615 20928662 -221735691 + G-rich Low_complexity Low_complexity 6 51 0 22 0 0 0 chr1 20928954 20928976 -221735377 + AT_rich Low_complexity Low_complexity 1 22 0 2211 75 0 41 chr1 20928985 20929304 -221735049 + AluY SINE Alu 1 306 -5 232 258 32 0 chr1 20929415 20929477 -221734876 - MIR SINE MIR -41 221 158 356 273 8 61 chr1 20929477 20929609 -221734744 + LTR2 LTR ERV1 1 125 -324 874 217 0 5 chr1 20929657 20929841 -221734512 + LTR2 LTR ERV1 266 448 -1 14000 179 20 14 chr1 20929842 20932337 -221732016 + HERVE LTR ERV1 1 2512 -5301 21115 137 2 10 chr1 20932337 20935502 -221728851 + HERVE LTR ERV1 2686 5822 -1991 563 176 0 0 chr1 20935532 20935623 -221728730 + HERVE LTR ERV1 5915 6005 -1808 278 190 52 0 chr1 20935626 20935684 -221728669 + Harlequin LTR ERV1 5468 5528 -1368 * 448 104 0 0 chr1 20935682 20935749 -221728604 + Harlequin LTR ERV1 6829 6895 -1 424 266 18 71 chr1 20935749 20935918 -221728435 + LTR2 LTR ERV1 1 160 -289 * 772 166 0 152 chr1 20935914 20936131 -221728222 + LTR2 LTR ERV1 266 449 0 326 274 171 8 chr1 20936131 20936248 -221728105 - MIR SINE MIR -100 162 27 309 304 63 38 chr1 20936283 20936441 -221727912 + MIR3 SINE MIR 2 163 -45 255 256 50 33 chr1 20936413 20936534 -221727819 - L2 LINE L2 -190 3123 3001 * 385 242 95 33 chr1 20936555 20936766 -221727587 - L2 LINE L2 -559 2755 2532 298 257 169 7 chr1 20936824 20936972 -221727381 - L2 LINE L2 -766 2548 2377 234 332 49 58 chr1 20937000 20937223 -221727130 + L2 LINE L2 2951 3171 -101 2019 125 0 0 chr1 20937473 20937760 -221726593 + AluSx SINE Alu 1 287 -25 378 231 0 22 chr1 20938272 20938363 -221725990 + L2 LINE L2 3182 3270 -2 2049 244 62 2 chr1 20938536 20939033 -221725320 - MLT1H LTR MaLR -7 542 16 252 327 38 44 chr1 20939166 20939325 -221725028 + L2 LINE L2 3096 3253 -60 432 260 0 0 chr1 20939812 20939958 -221724395 + (TG)n Simple_repeat Simple_repeat 2 147 0 866 325 136 20 chr1 20940131 20941061 -221723292 + L2 LINE L2 2260 3313 0 605 236 6 0 chr1 20941189 20941363 -221722990 + (TG)n Simple_repeat Simple_repeat 2 176 0 247 135 269 0 chr1 20941461 20941513 -221722840 + MIR SINE MIR 84 149 -113 243 353 6 19 chr1 20942124 20942280 -221722073 + CT-rich Low_complexity Low_complexity 6 159 0 1003 306 141 33 chr1 20942639 20943552 -221720801 + L2 LINE L2 2125 3235 -78 281 309 34 14 chr1 20943644 20943795 -221720558 + MIR SINE MIR 31 143 -65 282 270 135 0 chr1 20943797 20943908 -221720445 - L2 LINE L2 0 3272 3147 223 296 28 14 chr1 20943947 20944018 -221720335 - L2 LINE L2 -78 3194 3123 2017 133 3 7 chr1 20944691 20945000 -221719353 - AluJo SINE Alu -4 308 1 405 276 122 0 chr1 20945166 20945289 -221719064 - MIR SINE MIR -12 250 113 385 308 66 5 chr1 20945522 20945728 -221718625 + MIR SINE MIR 34 261 -1 217 300 0 0 chr1 20945712 20945762 -221718591 - MIR SINE MIR -101 161 112 * 347 289 18 9 chr1 20945835 20945949 -221718404 + MIR3 SINE MIR 91 205 -3 * 376 304 54 0 chr1 20945935 20946047 -221718306 + L2 LINE L2 3147 3264 -8 212 259 19 0 chr1 20946087 20946141 -221718212 - MIR SINE MIR -130 78 24 2632 26 0 7 chr1 20947273 20947583 -221716770 - AluY SINE Alu -3 308 1 226 280 13 40 chr1 20947870 20947945 -221716408 + L2 LINE L2 3232 3304 -9 229 175 0 0 chr1 20948048 20948088 -221716265 - L2 LINE L2 -12 3301 3262 296 314 82 48 chr1 20948524 20948547 -221715806 - MIR SINE MIR -3 259 238 1565 179 6 28 chr1 20948547 20948866 -221715487 + AluJo SINE Alu 1 312 0 296 314 82 48 chr1 20948866 20949049 -221715304 - MIR SINE MIR -24 238 46 368 318 32 8 chr1 20949051 20949177 -221715176 - L2 LINE L2 0 3272 3144 398 345 91 18 chr1 20949439 20949659 -221714694 + MIR SINE MIR 21 256 -6 767 224 79 0 chr1 20950128 20950293 -221714060 - MER45A DNA AcHobo 0 178 1 331 213 0 0 chr1 20950294 20950355 -221713998 - MER45A DNA AcHobo -117 61 1 344 312 9 0 chr1 20951179 20951288 -221713065 + L1ME LINE L1 5671 5780 -341 2281 82 0 29 chr1 20951423 20951739 -221712614 - AluSq SINE Alu -6 307 1 315 306 16 67 chr1 20951761 20951954 -221712399 + HAL1 LINE L1 2325 2507 0 190 327 0 0 chr1 20953378 20953430 -221710923 + MIR SINE MIR 102 153 -109 424 264 85 0 chr1 20953453 20953582 -221710771 - MIR SINE MIR -44 218 79 181 319 72 0 chr1 20954389 20954458 -221709895 + L2 LINE L2 3200 3273 -40 411 291 29 63 chr1 20954497 20954703 -221709650 + LTR16A LTR ERVL 97 295 -155 225 0 0 0 chr1 20954733 20954758 -221709595 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr1 20955042 20955065 -221709288 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 355 0 0 chr1 20955075 20955213 -221709140 + (TCTCTG)n Simple_repeat Simple_repeat 6 143 0 297 0 0 0 chr1 20955256 20955289 -221709064 + (TG)n Simple_repeat Simple_repeat 1 33 0 247 248 104 40 chr1 20955648 20955773 -221708580 + LTR16A1 LTR ERVL 319 451 -6 240 253 36 36 chr1 20955824 20955907 -221708446 - L2 LINE L2 -183 3089 3007 552 246 42 9 chr1 20955936 20956121 -221708232 - MIR SINE MIR -65 143 3 318 256 0 23 chr1 20956481 20956567 -221707786 + L2 LINE L2 3197 3280 -33 536 262 47 7 chr1 20956579 20956728 -221707625 - MIR SINE MIR -1 261 107 292 319 89 47 chr1 20956848 20957039 -221707314 - MIR SINE MIR -48 214 16 2044 120 0 128 chr1 20957705 20958104 -221706249 + MER7A DNA MER2_type 1 346 0 246 311 107 29 chr1 20958521 20958624 -221705729 - L2 LINE L2 -21 3251 3141 636 263 78 11 chr1 20958670 20958849 -221705504 - MIR SINE MIR -48 214 24 265 291 114 52 chr1 20959133 20959404 -221704949 - L2 LINE L2 -174 3098 2811 312 27 0 0 chr1 20959712 20959749 -221704604 + (CA)n Simple_repeat Simple_repeat 1 37 0 389 320 39 46 chr1 20960133 20960392 -221703961 - L2 LINE L2 -1764 1550 1294 1679 134 65 20 chr1 20960392 20960684 -221703669 + AluJb SINE Alu 1 305 -7 183 333 90 11 chr1 20961182 20961371 -221702982 - MIR3 SINE MIR -2 206 3 198 91 0 0 chr1 20961517 20961550 -221702803 + (CCCGA)n Simple_repeat Simple_repeat 1 33 0 392 294 7 126 chr1 20964435 20964721 -221699632 - MIR3 SINE MIR -10 252 1 889 150 0 0 chr1 20965138 20965278 -221699075 + AluSg/x SINE Alu 173 312 0 537 235 52 7 chr1 20965334 20965470 -221698883 + MIR3 SINE MIR 4 145 -63 1028 182 31 0 chr1 20965494 20965686 -221698667 + MER58 DNA MER1_type 1 198 -143 192 287 132 22 chr1 20965774 20965910 -221698443 + L2 LINE L2 3113 3263 -50 426 227 110 19 chr1 20970872 20971026 -221693327 - L2 LINE L2 -614 2700 2533 1924 145 3 3 chr1 20972005 20972315 -221692038 - AluSx SINE Alu 0 312 3 614 266 180 61 chr1 20972379 20972554 -221691799 - L2 LINE L2 -4 3309 3156 2182 61 51 3 chr1 20972554 20972850 -221691503 + AluSg SINE Alu 1 310 0 614 266 180 61 chr1 20972850 20973384 -221690969 - L2 LINE L2 -157 3156 2534 550 241 118 76 chr1 20973561 20974035 -221690318 - L1ME4a LINE L1 -37 6084 5591 219 218 91 18 chr1 20974522 20974577 -221689776 - L2 LINE L2 -75 3197 3139 350 336 110 7 chr1 20975413 20975559 -221688794 + MER5B DNA MER1_type 18 178 0 205 278 19 0 chr1 20975559 20975612 -221688741 + MIR3 SINE MIR 148 201 -7 225 333 137 20 chr1 20975858 20976011 -221688342 + MIR SINE MIR 92 262 0 415 264 147 8 chr1 20976049 20976178 -221688175 - L2 LINE L2 -1 3271 3125 436 195 58 0 chr1 20976210 20976297 -221688056 + L2 LINE L2 3222 3313 0 205 358 55 28 chr1 20976398 20976507 -221687846 + L2 LINE L2 3132 3243 -29 325 250 190 0 chr1 20977169 20977269 -221687084 - L2 LINE L2 -1 3271 3153 188 312 96 24 chr1 20977514 20977639 -221686714 + L3 LINE CR1 1432 1565 -12 413 274 126 29 chr1 20978148 20978323 -221686030 + L2 LINE L2 3104 3295 -18 568 256 40 62 chr1 20978545 20978772 -221685581 + MIR SINE MIR 5 226 -36 447 312 64 0 chr1 20979437 20979594 -221684759 - MIR SINE MIR -48 214 48 2285 80 0 0 chr1 20980308 20980609 -221683744 + AluY SINE Alu 1 301 -10 361 304 164 26 chr1 20980702 20981014 -221683339 - L2 LINE L2 -7 3265 2911 193 250 25 0 chr1 20981651 20981691 -221682662 - L2 LINE L2 -11 3261 3221 738 188 0 15 chr1 20981711 20981871 -221682482 - FLAM_A SINE Alu 0 133 1 932 178 0 12 chr1 20982061 20982224 -221682129 - FRAM SINE Alu -14 162 2 2039 121 0 29 chr1 20982239 20982554 -221681799 - AluSx SINE Alu -6 306 1 606 62 0 12 chr1 20983111 20983191 -221681162 - MADE1 DNA Mariner 0 80 2 1188 174 5 14 chr1 20983497 20983715 -221680638 + AluJo SINE Alu 82 297 -15 803 95 26 0 chr1 20984325 20984441 -221679912 + FLAM_C SINE Alu 1 119 -24 336 271 136 7 chr1 20985722 20985877 -221678476 - MIR3 SINE MIR -20 188 14 256 321 76 15 chr1 20985891 20985929 -221678424 + L2 LINE L2 3175 3209 -104 1866 148 6 6 chr1 20985929 20986240 -221678113 - AluJo SINE Alu -1 311 1 256 321 76 15 chr1 20986240 20986332 -221678021 + L2 LINE L2 3209 3313 0 252 277 14 113 chr1 20988342 20988483 -221675870 + MIR3 SINE MIR 52 178 -30 198 0 0 0 chr1 20988491 20988513 -221675840 + (A)n Simple_repeat Simple_repeat 1 22 0 2059 76 38 17 chr1 20989433 20989723 -221674630 + AluSp SINE Alu 1 296 -17 899 249 56 13 chr1 20991672 20991905 -221672448 + MIR SINE MIR 13 255 -7 726 293 53 59 chr1 20991955 20992296 -221672057 + MLT1I LTR MaLR 71 409 0 1736 152 6 38 chr1 20992463 20992779 -221671574 - AluJo SINE Alu -6 306 1 1508 184 0 7 chr1 20992874 20993151 -221671202 + AluJo SINE Alu 24 298 -14 260 206 93 62 chr1 20993813 20993910 -221670443 + MIR3 SINE MIR 106 205 -3 1799 169 0 0 chr1 20994000 20994295 -221670058 - AluJb SINE Alu -17 295 1 269 291 36 36 chr1 20994537 20994702 -221669651 - L1ME4a LINE L1 -14 6107 5943 1669 96 0 0 chr1 20994784 20995003 -221669350 + AluSq SINE Alu 1 219 -94 742 133 0 0 chr1 20995003 20995137 -221669216 + AluSp/q SINE Alu 188 321 0 400 263 81 6 chr1 20995156 20995316 -221669037 - L1ME4a LINE L1 -303 5818 5647 552 261 25 53 chr1 20996247 20996407 -221667946 - MIR SINE MIR -2 260 103 2289 82 0 0 chr1 20996407 20996701 -221667652 + AluSq SINE Alu 1 294 -19 552 261 25 53 chr1 20996701 20996787 -221667566 - MIR SINE MIR -159 103 16 272 289 158 9 chr1 20997686 20997800 -221666553 - L2 LINE L2 -1 3271 3141 1073 320 91 37 chr1 20998427 20999209 -221665144 + L2 LINE L2 2034 2857 -457 234 338 0 0 chr1 20999529 20999603 -221664750 + L2 LINE L2 3231 3304 -9 2687 102 40 26 chr1 21001220 21001640 -221662713 - MSTA LTR MaLR -2 426 1 338 270 245 19 chr1 21002153 21002312 -221662041 + MIR SINE MIR 17 211 -51 1944 109 7 3 chr1 21002946 21003278 -221661075 + AluSx SINE Alu 1 333 0 238 335 52 0 chr1 21003445 21003600 -221660753 - L2 LINE L2 -1195 2119 1957 * 597 273 95 30 chr1 21003595 21003826 -221660527 - MIR SINE MIR -2 260 15 846 270 22 4 chr1 21003895 21004121 -221660232 - LTR16A LTR ERVL -7 443 214 383 314 73 0 chr1 21004299 21004423 -221659930 + MIR SINE MIR 45 177 -85 390 235 133 87 chr1 21005174 21005294 -221659059 - MIR SINE MIR -6 256 122 2038 100 7 27 chr1 21005294 21005595 -221658758 + AluSx SINE Alu 1 295 -17 390 235 133 87 chr1 21005595 21005670 -221658683 - MIR SINE MIR -140 122 52 210 263 112 20 chr1 21006354 21006446 -221657907 + MIR SINE MIR 47 145 -63 1543 231 54 39 chr1 21006582 21006711 -221657642 - MER113 DNA MER1_type? -51 470 344 1976 147 0 0 chr1 21006711 21007011 -221657342 - AluSx SINE Alu -12 300 1 1543 231 54 39 chr1 21007011 21007344 -221657009 - MER113 DNA MER1_type? -177 344 1 2154 115 0 10 chr1 21007557 21007861 -221656492 + AluSx SINE Alu 1 301 -11 3858 131 69 29 chr1 21007881 21008880 -221655473 - MER11A LTR ERVK 0 1266 1 253 341 3 0 chr1 21008890 21008960 -221655393 + MIR SINE MIR 40 111 -97 673 276 40 27 chr1 21008979 21009204 -221655149 - MIR SINE MIR -1 261 34 198 268 171 12 chr1 21009204 21009286 -221655067 + MIR SINE MIR 156 250 -12 884 303 38 58 chr1 21011884 21012329 -221652024 + MLT1K LTR MaLR 67 502 -86 243 388 23 0 chr1 21012402 21012531 -221651822 + L2 LINE L2 2713 2844 -470 5911 157 2 4 chr1 21012940 21013859 -221650494 + MER49 LTR ERV1 7 923 0 426 281 118 31 chr1 21013928 21013944 -221650409 - L2 LINE L2 -411 2903 2890 2280 75 0 13 chr1 21013944 21014249 -221650104 + AluY SINE Alu 1 301 -10 426 281 118 31 chr1 21014249 21014460 -221649893 - L2 LINE L2 -424 2890 2656 3764 129 81 94 chr1 21014498 21014701 -221649652 + MER4D LTR ERV1 9 213 -659 2083 125 0 0 chr1 21014701 21014996 -221649357 + AluSx SINE Alu 1 295 -17 3764 129 81 94 chr1 21014996 21015102 -221649251 + MER4D LTR ERV1 213 319 -553 2011 107 0 0 chr1 21015102 21015398 -221648955 - AluSx SINE Alu 0 307 12 3764 129 81 94 chr1 21015398 21015959 -221648394 + MER4D LTR ERV1 319 870 -2 649 285 144 52 chr1 21015959 21016425 -221647928 - L2 LINE L2 -695 2619 2111 184 268 18 18 chr1 21016536 21016592 -221647761 + L2 LINE L2 3217 3272 0 235 332 89 74 chr1 21016800 21016990 -221647363 - MIR SINE MIR -50 212 20 181 297 99 18 chr1 21017698 21017809 -221646544 - L2 LINE L2 -800 2514 2395 190 220 0 51 chr1 21018404 21018463 -221645890 + MIR3 SINE MIR 117 172 -36 411 250 275 25 chr1 21018988 21019198 -221645155 + MIR SINE MIR 2 261 -1 944 245 86 99 chr1 21019582 21019813 -221644540 + MLT1H LTR MaLR 1 233 -316 637 204 9 0 chr1 21019813 21019926 -221644427 + MER81 DNA DNA 1 114 0 944 245 86 99 chr1 21019926 21020250 -221644103 + MLT1H LTR MaLR 233 549 0 697 329 101 29 chr1 21020346 21020810 -221643543 - L2 LINE L2 -1 3271 2783 1656 200 84 14 chr1 21020935 21021305 -221643048 - MSTD LTR MaLR 0 396 1 604 269 83 37 chr1 21021732 21021974 -221642379 - L2 LINE L2 0 3313 3061 304 315 105 14 chr1 21022380 21022523 -221641830 + L2 LINE L2 2916 3071 -201 1044 263 63 72 chr1 21022523 21023047 -221641306 - MLT1H LTR MaLR 0 549 31 423 318 45 0 chr1 21023131 21023307 -221641046 + L2 LINE L2 3130 3313 0 3953 84 2 33 chr1 21023764 21024085 -221640268 + MER41A LTR ERV1 1 298 -256 1336 90 0 47 chr1 21024085 21024297 -221640056 + L1PA7 LINE L1 5953 6154 0 3953 84 2 33 chr1 21024297 21024547 -221639806 + MER41A LTR ERV1 298 554 0 399 320 66 35 chr1 21024590 21024849 -221639504 + L2 LINE L2 2816 3082 -190 250 246 130 0 chr1 21025001 21025070 -221639283 + MIR SINE MIR 182 259 -3 2219 182 35 45 chr1 21025336 21025846 -221638507 + MLT1D LTR MaLR 1 505 0 186 227 0 0 chr1 21025869 21025913 -221638440 + GA-rich Low_complexity Low_complexity 1 44 0 4856 84 9 0 chr1 21026643 21027288 -221637065 - L1PA10 LINE L1 -5 6163 5513 1539 71 22 0 chr1 21027294 21027520 -221636833 + L1PA10 LINE L1 5254 5484 -684 442 272 84 94 chr1 21027542 21027851 -221636502 + L2 LINE L2 2952 3257 -56 2114 147 2 91 chr1 21027903 21028331 -221636022 + MLT1B LTR MaLR 1 390 0 580 260 75 35 chr1 21028405 21028858 -221635495 - LTR33 LTR ERVL -16 505 1 266 239 194 75 chr1 21029228 21029302 -221635051 - MIR SINE MIR -8 254 190 731 189 0 8 chr1 21029302 21029429 -221634924 + FLAM_A SINE Alu 2 127 -6 266 239 194 75 chr1 21029429 21029488 -221634865 - MIR SINE MIR -72 190 105 591 249 96 35 chr1 21029618 21029847 -221634506 - MIR SINE MIR 0 262 20 243 139 0 0 chr1 21030063 21030099 -221634254 - MER20 DNA MER1_type -2 217 182 1988 87 42 8 chr1 21030102 21030391 -221633962 - AluSx SINE Alu 0 312 21 454 195 23 62 chr1 21030835 21030963 -221633390 - MER20 DNA MER1_type -39 180 58 345 330 28 51 chr1 21031156 21031332 -221633021 + MIR SINE MIR 20 191 -71 204 336 30 103 chr1 21031911 21032143 -221632210 + L2 LINE L2 3016 3230 -42 497 267 52 98 chr1 21032144 21032624 -221631729 + MLT1J LTR MaLR 3 460 -51 2213 138 0 0 chr1 21032817 21033121 -221631232 - AluSq SINE Alu -7 306 3 222 335 71 41 chr1 21033347 21033517 -221630836 - L2 LINE L2 -83 3189 3015 351 303 118 10 chr1 21033530 21033725 -221630628 + MIR SINE MIR 47 262 0 293 258 15 0 chr1 21034184 21034250 -221630103 + MIR3 SINE MIR 94 160 -48 705 211 41 35 chr1 21034251 21034422 -221629931 + MER5B DNA MER1_type 2 173 -5 455 331 11 11 chr1 21034459 21034634 -221629719 + MIR SINE MIR 68 242 -20 418 309 29 22 chr1 21034975 21035111 -221629242 - MIR3 SINE MIR -27 181 45 318 26 0 0 chr1 21035113 21035152 -221629201 + (A)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr1 21035168 21035189 -221629164 + AT_rich Low_complexity Low_complexity 1 21 0 438 239 68 34 chr1 21035712 21035829 -221628524 + MIR SINE MIR 142 262 0 874 307 116 18 chr1 21035854 21036310 -221628043 - LTR33 LTR ERVL 0 521 21 767 273 93 5 chr1 21036818 21037034 -221627319 + MIR SINE MIR 28 262 0 279 250 148 9 chr1 21037037 21037145 -221627208 + L2 LINE L2 3145 3267 -5 * 436 299 37 8 chr1 21037139 21037273 -221627080 - MIR SINE MIR -94 168 31 824 175 127 0 chr1 21037290 21037456 -221626897 - MER5A DNA MER1_type -2 187 1 701 113 0 16 chr1 21037832 21037956 -221626397 + (TTCC)n Simple_repeat Simple_repeat 1 122 0 2317 131 0 0 chr1 21037995 21038307 -221626046 - AluSx SINE Alu 0 312 1 365 294 20 0 chr1 21038786 21038888 -221625465 - MLT1L LTR MaLR -4 611 508 539 309 52 0 chr1 21039009 21039203 -221625150 + MIR SINE MIR 43 246 -16 2276 177 78 9 chr1 21039543 21039979 -221624374 - MLT1C LTR MaLR -1 466 1 376 307 53 7 chr1 21039999 21040149 -221624204 + L2 LINE L2 2895 3051 -221 544 217 191 0 chr1 21040326 21040478 -221623875 + MER5A DNA MER1_type 9 189 0 * 633 241 40 23 chr1 21040478 21040650 -221623703 + MIR SINE MIR 88 262 0 559 300 27 25 chr1 21041169 21041379 -221622974 - MIR SINE MIR -24 238 30 2176 125 0 7 chr1 21041560 21041865 -221622488 - AluSx SINE Alu -3 309 7 488 324 0 7 chr1 21042142 21042287 -221622066 - MIR SINE MIR -106 156 13 229 157 0 0 chr1 21042679 21042730 -221621623 + MER113 DNA MER1_type? 63 113 -408 351 221 176 43 chr1 21042920 21043084 -221621269 - MIR SINE MIR -61 147 16 2549 47 3 6 chr1 21043272 21043590 -221620763 - L1PA5 LINE L1 0 6154 5838 635 262 18 21 chr1 21044540 21044767 -221619586 + MLT1G1 LTR MaLR 11 239 -310 388 103 206 0 chr1 21044828 21044896 -221619457 + MLT1B LTR MaLR 21 81 -293 1156 210 30 34 chr1 21044956 21045251 -221619102 + MLT1B LTR MaLR 97 390 0 361 298 32 0 chr1 21045359 21045453 -221618900 + L2 LINE L2 2514 2610 -704 244 288 27 77 chr1 21045623 21045845 -221618508 - MLT1I LTR MaLR -196 213 43 670 276 114 35 chr1 21045963 21046217 -221618136 + L2 LINE L2 2696 2984 -288 2627 113 6 3 chr1 21046217 21046580 -221617773 + THE1B LTR MaLR 1 364 0 670 276 114 35 chr1 21046580 21046689 -221617664 + L2 LINE L2 2984 3083 -189 2508 126 5 0 chr1 21046709 21047091 -221617262 + MLT1B LTR MaLR 1 384 -6 372 230 246 8 chr1 21047151 21047277 -221617076 + L2 LINE L2 3117 3272 0 215 333 9 9 chr1 21047841 21047946 -221616407 + CT-rich Low_complexity Low_complexity 1 105 0 335 266 169 8 chr1 21048586 21048710 -221615643 + MIR SINE MIR 117 260 -2 292 240 125 0 chr1 21049138 21049242 -221615111 + L2 LINE L2 3180 3296 -17 1113 135 0 2 chr1 21049242 21049765 -221614588 + (TGGA)n Simple_repeat Simple_repeat 1 521 0 227 345 27 9 chr1 21050018 21050128 -221614225 + MIR SINE MIR 114 225 -37 291 253 87 30 chr1 21050423 21050556 -221613797 + MIR SINE MIR 61 201 -61 2557 62 0 3 chr1 21050569 21050877 -221613476 + AluY SINE Alu 1 307 -4 180 176 0 0 chr1 21051091 21051125 -221613228 + GA-rich Low_complexity Low_complexity 2 35 0 650 283 181 26 chr1 21051418 21051971 -221612382 + L2 LINE L2 2632 3272 0 444 302 189 6 chr1 21052589 21052758 -221611595 + MIR SINE MIR 7 206 -56 422 278 111 7 chr1 21053101 21053245 -221611108 - MIR SINE MIR -32 230 72 952 115 0 0 chr1 21053779 21053909 -221610444 - AluSg/x SINE Alu 0 309 180 2826 127 28 12 chr1 21054098 21054523 -221609830 - MSTB1 LTR MaLR 0 432 1 342 154 0 0 chr1 21054902 21054954 -221609399 - L2 LINE L2 0 3313 3262 397 324 148 15 chr1 21054955 21055460 -221608893 - L2 LINE L2 -249 3064 2497 204 242 0 0 chr1 21055858 21055909 -221608444 - MIR SINE MIR -87 121 70 233 365 42 10 chr1 21056085 21056181 -221608172 - L2 LINE L2 -32 3240 3142 401 219 76 29 chr1 21056629 21056734 -221607619 - L2 LINE L2 -9 3304 3195 583 311 189 40 chr1 21056759 21057712 -221606641 + L2 LINE L2 2202 3308 -5 248 316 89 0 chr1 21057735 21057814 -221606539 + MIR SINE MIR 161 246 -16 384 250 47 39 chr1 21058461 21058589 -221605764 + MIR SINE MIR 31 159 -103 532 311 146 30 chr1 21058649 21059314 -221605039 - L2 LINE L2 0 3313 2584 584 235 60 6 chr1 21060021 21060187 -221604166 - MER97c DNA MER1_type? -912 178 4 461 328 110 58 chr1 21060331 21061004 -221603349 - L2 LINE L2 0 3272 2563 2168 119 60 26 chr1 21061049 21061401 -221602952 + THE1B LTR MaLR 1 364 0 841 267 137 73 chr1 21061405 21061910 -221602443 - MLT1H LTR MaLR 0 549 13 192 40 0 0 chr1 21061968 21061993 -221602360 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 248 263 17 0 chr1 21062589 21062657 -221601696 + MIR SINE MIR 85 142 -66 828 226 80 10 chr1 21062721 21062920 -221601433 - MIR SINE MIR -48 214 2 1817 195 36 55 chr1 21063017 21063061 -221601292 + MLT1C LTR MaLR 1 44 -423 2813 62 23 13 chr1 21063061 21063445 -221600908 - L1PA8 LINE L1 -2 6170 5783 1817 195 36 55 chr1 21063445 21063876 -221600477 + MLT1C LTR MaLR 44 467 0 558 299 35 35 chr1 21064308 21064539 -221599814 + MIR SINE MIR 4 234 -28 327 306 111 7 chr1 21065298 21065442 -221598911 + MIR SINE MIR 34 192 -70 431 259 86 7 chr1 21065536 21065675 -221598678 + MIR SINE MIR 43 192 -70 311 127 16 0 chr1 21066686 21066749 -221597604 + (TG)n Simple_repeat Simple_repeat 2 65 0 482 119 12 0 chr1 21066849 21066933 -221597420 + (TC)n Simple_repeat Simple_repeat 1 85 0 209 258 48 0 chr1 21066937 21066999 -221597354 + CT-rich Low_complexity Low_complexity 6 70 0 184 172 35 0 chr1 21067014 21067072 -221597281 + CT-rich Low_complexity Low_complexity 1 60 0 455 232 36 0 chr1 21067568 21067736 -221596617 + CT-rich Low_complexity Low_complexity 2 175 0 1904 92 96 0 chr1 21069988 21070275 -221594078 - AluSp SINE Alu 0 312 1 1110 83 0 0 chr1 21070277 21070409 -221593944 - AluSp SINE Alu -181 132 1 218 299 52 0 chr1 21070416 21070493 -221593860 - MIR SINE MIR -102 160 80 2256 112 7 0 chr1 21071387 21071683 -221592670 - AluSq SINE Alu -15 298 1 503 258 0 16 chr1 21072510 21072638 -221591715 - L2 LINE L2 -1 3312 3187 658 235 73 17 chr1 21072866 21073045 -221591308 - MLT1I LTR MaLR -188 221 33 236 252 72 45 chr1 21073339 21073450 -221590903 + MIR SINE MIR 99 212 -50 1857 158 16 13 chr1 21073517 21073827 -221590526 - AluJo SINE Alu -1 311 1 431 285 52 12 chr1 21074056 21074228 -221590125 - MIR SINE MIR -35 227 49 455 302 61 24 chr1 21074427 21074639 -221589714 + MIR SINE MIR 5 224 -38 2142 151 0 0 chr1 21074912 21075224 -221589129 - AluSx SINE Alu 0 312 1 586 278 72 10 chr1 21075555 21075749 -221588604 + MIR SINE MIR 18 223 -39 771 301 13 0 chr1 21076035 21076264 -221588089 + MIR SINE MIR 31 262 0 271 315 75 34 chr1 21076807 21076953 -221587400 - MIR SINE MIR -3 259 108 194 146 195 0 chr1 21077954 21077995 -221586358 - L2 LINE L2 -3 3310 3262 337 250 52 0 chr1 21078076 21078172 -221586181 + L2 LINE L2 3208 3308 -5 239 318 90 26 chr1 21078260 21078449 -221585904 - L2 LINE L2 -222 3050 2850 340 206 0 0 chr1 21079043 21079111 -221585242 - MIR SINE MIR -132 130 63 187 203 81 40 chr1 21079412 21079486 -221584867 + MIR3 SINE MIR 13 89 -119 265 317 137 70 chr1 21079579 21080054 -221584299 - L2 LINE L2 -26 3246 2746 243 146 0 0 chr1 21080073 21080114 -221584239 + (TG)n Simple_repeat Simple_repeat 1 41 0 532 314 120 0 chr1 21080283 21080474 -221583879 + MIR SINE MIR 1 214 -48 917 223 40 32 chr1 21080480 21080727 -221583626 - L2 LINE L2 -1 3312 3064 187 341 16 8 chr1 21081111 21081237 -221583116 - L2 LINE L2 -2990 324 198 670 270 81 54 chr1 21081467 21081800 -221582553 - L2 LINE L2 0 3313 2972 353 284 27 40 chr1 21081865 21082013 -221582340 - L2 LINE L2 -548 2766 2621 295 74 0 93 chr1 21082140 21082194 -221582159 - L2 LINE L2 0 3313 3265 353 209 270 0 chr1 21083002 21083117 -221581236 + MIR SINE MIR 117 262 0 254 317 100 17 chr1 21083146 21083266 -221581087 + L2 LINE L2 3142 3271 -1 2145 116 24 24 chr1 21083388 21083758 -221580595 - L1PA16 LINE L1 -1 6165 5796 490 301 88 48 chr1 21084906 21085428 -221578925 - L2 LINE L2 -227 3045 2498 441 0 0 0 chr1 21085428 21085477 -221578876 + (TG)n Simple_repeat Simple_repeat 2 50 0 490 301 88 48 chr1 21085477 21085569 -221578784 - L2 LINE L2 -774 2498 2411 218 256 115 0 chr1 21085627 21085705 -221578648 - MIR3 SINE MIR -11 197 111 286 323 42 0 chr1 21085803 21085899 -221578454 + MIR SINE MIR 49 148 -60 407 250 22 0 chr1 21086311 21086403 -221577950 + MIR SINE MIR 58 151 -57 2181 124 0 0 chr1 21086497 21086788 -221577565 - AluJb SINE Alu -16 296 6 287 53 0 0 chr1 21087511 21087549 -221576804 - MIR SINE MIR -61 147 110 369 229 229 7 chr1 21087643 21087787 -221576566 + MER5A DNA MER1_type 13 188 -1 493 278 43 19 chr1 21087830 21087992 -221576361 - MIR SINE MIR -69 193 28 268 322 23 0 chr1 21088075 21088162 -221576191 + Charlie8 DNA MER1_type 110 198 -2219 294 258 178 25 chr1 21088612 21088764 -221575589 + MIR SINE MIR 17 191 -56 198 388 9 9 chr1 21088803 21088919 -221575434 + MIR SINE MIR 1 116 -146 248 174 0 0 chr1 21089025 21089071 -221575282 - MIR SINE MIR -76 132 87 208 244 0 0 chr1 21089106 21089151 -221575202 - MIR SINE MIR -118 90 46 270 314 108 27 chr1 21089628 21089851 -221574502 + MIR SINE MIR 2 242 -20 560 318 75 43 chr1 21090386 21090760 -221573593 - L2 LINE L2 -5 3308 2923 488 278 106 26 chr1 21091017 21091324 -221573029 - L2 LINE L2 -184 3129 2791 316 324 63 0 chr1 21091637 21091748 -221572605 + L1MC/D LINE L1 5470 5587 -2198 258 289 189 6 chr1 21092176 21092335 -221572018 - MIR SINE MIR -19 243 56 311 289 18 89 chr1 21092371 21092437 -221571916 + MIR SINE MIR 34 103 -159 2065 84 4 0 chr1 21092437 21092700 -221571653 + AluY SINE Alu 42 305 -6 311 289 18 89 chr1 21092700 21092858 -221571495 + MIR SINE MIR 103 242 -20 555 225 106 12 chr1 21093495 21093655 -221570698 - MER5B DNA MER1_type -3 175 1 315 228 168 0 chr1 21093892 21093993 -221570360 - MIR3 SINE MIR -21 187 70 374 235 17 42 chr1 21094596 21094715 -221569638 - MIR3 SINE MIR -7 201 86 189 217 33 50 chr1 21095092 21095152 -221569201 - MIR SINE MIR -83 125 67 839 319 158 12 chr1 21096758 21096825 -221567528 - L2 LINE L2 -87 3226 3170 2340 102 0 0 chr1 21096825 21097129 -221567224 + AluSc SINE Alu 1 304 -5 839 319 158 12 chr1 21097129 21097783 -221566570 - L2 LINE L2 -143 3170 2396 238 213 27 27 chr1 21097793 21097868 -221566485 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 274 265 157 0 chr1 21098232 21098334 -221566019 - MIR SINE MIR -26 236 119 563 253 59 12 chr1 21098527 21098697 -221565656 - MIR SINE MIR -62 200 23 447 298 64 11 chr1 21099357 21099566 -221564787 - MIR SINE MIR -6 256 38 297 341 59 15 chr1 21099657 21099792 -221564561 - L2 LINE L2 -20 3252 3112 385 293 82 30 chr1 21100536 21100712 -221563641 - MIR3 SINE MIR -7 201 17 293 330 10 10 chr1 21100805 21100908 -221563445 + MIR SINE MIR 47 149 -59 350 314 26 45 chr1 21100953 21101109 -221563244 - MER117 DNA MER1_type -34 163 11 207 0 0 0 chr1 21101982 21102005 -221562348 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1939 100 58 0 chr1 21102010 21102269 -221562084 - AluSg SINE Alu -36 274 1 313 270 9 52 chr1 21102288 21102403 -221561950 + MIR SINE MIR 65 174 -88 279 122 0 0 chr1 21102517 21102566 -221561787 + (CAT)n Simple_repeat Simple_repeat 2 50 0 698 299 19 5 chr1 21102671 21102882 -221561471 + MIR SINE MIR 25 238 -24 321 89 0 0 chr1 21103173 21103218 -221561135 + (TGG)n Simple_repeat Simple_repeat 1 45 0 249 159 0 0 chr1 21104046 21104090 -221560263 + GA-rich Low_complexity Low_complexity 4 47 0 622 227 0 8 chr1 21104157 21104289 -221560064 + FLAM_A SINE Alu 11 141 -1 727 310 122 5 chr1 21104395 21104772 -221559581 - L1ME4a LINE L1 -116 6005 5585 2034 110 0 38 chr1 21104808 21105099 -221559254 - AluSx SINE Alu -1 311 32 306 329 7 40 chr1 21105225 21105374 -221558979 - MIR3 SINE MIR -58 150 7 194 283 0 0 chr1 21106562 21106608 -221557745 - MIR SINE MIR -118 90 45 702 315 97 26 chr1 21106952 21107333 -221557020 - LTR16B LTR ERVL -24 440 33 325 250 12 12 chr1 21107554 21107634 -221556719 - MIR SINE MIR -58 150 71 * 420 247 25 70 chr1 21107622 21107716 -221556637 + MIR3 SINE MIR 55 142 -66 2098 120 0 7 chr1 21107716 21108070 -221556283 + AluSx SINE Alu 1 352 0 420 247 25 70 chr1 21108070 21108132 -221556221 + MIR3 SINE MIR 142 205 -3 401 306 10 67 chr1 21108680 21108748 -221555605 + MER5A DNA MER1_type 8 78 -111 1953 110 0 11 chr1 21108748 21109012 -221555341 + AluSx SINE Alu 37 297 -15 401 306 10 67 chr1 21109012 21109136 -221555217 + MER5A DNA MER1_type 78 189 0 668 237 73 17 chr1 21109529 21109706 -221554647 - Charlie8 DNA MER1_type -2132 285 99 309 333 31 56 chr1 21109950 21110049 -221554304 + L1M4 LINE L1 5510 5610 -574 2300 105 0 0 chr1 21110049 21110344 -221554009 + AluSx SINE Alu 1 295 -17 309 333 31 56 chr1 21110344 21110498 -221553855 + L1M4 LINE L1 5610 5756 -428 1730 151 13 30 chr1 21110546 21110851 -221553502 + AluJo SINE Alu 1 300 -12 2544 141 37 7 chr1 21110985 21111417 -221552936 - Tigger2 DNA MER2_type -1 2717 2273 428 159 0 0 chr1 21111406 21111475 -221552878 - Tigger2 DNA MER2_type -2649 69 1 * 518 279 122 20 chr1 21112040 21112237 -221552116 - MIR SINE MIR -17 245 29 209 359 106 45 chr1 21112254 21112566 -221551787 - L2 LINE L2 -5 3267 2937 2186 138 0 0 chr1 21112644 21112948 -221551405 - AluSx SINE Alu -8 304 1 331 194 15 0 chr1 21113675 21113742 -221550611 - MIR SINE MIR -70 138 71 1997 136 0 18 chr1 21113862 21114038 -221550315 - AluSx SINE Alu 0 308 138 2342 122 0 0 chr1 21114038 21114350 -221550003 - AluSq SINE Alu -1 312 1 1997 136 0 18 chr1 21114350 21114485 -221549868 - AluSx SINE Alu -170 138 2 923 171 81 38 chr1 21114524 21114734 -221549619 - MER20 DNA MER1_type 0 219 1 2112 137 0 13 chr1 21114780 21115095 -221549258 + AluJb SINE Alu 1 311 -1 285 245 42 33 chr1 21115315 21115411 -221548942 + MIR3 SINE MIR 61 158 -50 206 295 16 0 chr1 21115428 21115489 -221548864 - L2 LINE L2 -3 3310 3249 189 0 0 0 chr1 21115720 21115741 -221548612 + (CA)n Simple_repeat Simple_repeat 1 21 0 347 277 10 0 chr1 21116477 21116578 -221547775 - L1ME1 LINE L1 -19 6147 6046 888 300 65 45 chr1 21116582 21117193 -221547160 - L1MC4a LINE L1 -1918 5890 5273 463 317 104 56 chr1 21117263 21117619 -221546734 + L1M4 LINE L1 4773 5145 -1001 423 119 0 0 chr1 21117877 21117944 -221546409 + (TCC)n Simple_repeat Simple_repeat 1 67 0 249 246 6 77 chr1 21119226 21119409 -221544944 + C-rich Low_complexity Low_complexity 3 172 0 397 293 40 83 chr1 21119868 21120168 -221544185 - L2 LINE L2 0 3313 3027 314 350 21 14 chr1 21120442 21120585 -221543768 + MIR SINE MIR 20 163 -99 279 273 104 59 chr1 21121382 21121602 -221542751 - HAL1b LINE L1 -10 1338 1109 660 285 22 26 chr1 21121688 21121916 -221542437 - MIR SINE MIR -35 227 1 508 226 202 45 chr1 21121945 21122237 -221542116 - L1ME LINE L1 -363 5758 5421 537 269 7 0 chr1 21122717 21122858 -221541495 + MER103 DNA DNA 13 154 -12 1693 165 6 69 chr1 21122950 21123283 -221541070 - AluJo SINE Alu 0 312 1 372 318 103 11 chr1 21123492 21123654 -221540699 - MIR SINE MIR -62 146 3 288 0 0 0 chr1 21124892 21124924 -221539429 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1885 126 7 0 chr1 21124924 21125202 -221539151 - AluSx SINE Alu -32 280 1 198 0 0 0 chr1 21125252 21125274 -221539079 + (T)n Simple_repeat Simple_repeat 1 22 0 422 231 113 86 chr1 21125299 21125485 -221538868 - MIR SINE MIR -26 236 46 476 228 47 2 chr1 21125849 21126001 -221538352 - MIR SINE MIR -62 146 35 254 315 56 0 chr1 21126265 21126373 -221537980 + MIR3 SINE MIR 88 201 -7 1630 155 56 11 chr1 21126759 21126892 -221537461 + AluJo SINE Alu 3 128 -184 2227 106 0 0 chr1 21126892 21127194 -221537159 + AluSg SINE Alu 1 302 -8 1630 155 56 11 chr1 21127194 21127344 -221537009 + AluJo SINE Alu 128 299 -13 370 324 21 42 chr1 21127370 21127512 -221536841 + MIR3 SINE MIR 54 192 -16 575 276 55 96 chr1 21128359 21128652 -221535701 - L2 LINE L2 -5 3267 2987 619 223 43 7 chr1 21129897 21130036 -221534317 + MIR3 SINE MIR 19 162 -46 208 293 27 27 chr1 21131912 21131987 -221532366 + MIR3 SINE MIR 82 156 -52 474 349 0 7 chr1 21132679 21132825 -221531528 + MIR3 SINE MIR 16 160 -48 310 294 59 10 chr1 21133073 21133175 -221531178 - L2 LINE L2 -7 3306 3200 1166 272 57 42 chr1 21135150 21135171 -221529182 - LTR16C LTR ERVL 0 491 472 540 234 0 9 chr1 21135171 21135282 -221529071 + MER81 DNA DNA 1 110 -4 1166 272 57 42 chr1 21135282 21135661 -221528692 - LTR16C LTR ERVL -19 472 85 262 298 32 0 chr1 21135952 21136046 -221528307 - LTR16C LTR ERVL -390 101 5 408 20 0 0 chr1 21136616 21136665 -221527688 + (TG)n Simple_repeat Simple_repeat 2 50 0 380 296 76 111 chr1 21137972 21138316 -221526037 + L2 LINE L2 2932 3263 -9 36 53 0 0 chr1 21138497 21138554 -221525799 + AT_rich Low_complexity Low_complexity 1 57 0 191 111 0 22 chr1 21138554 21138599 -221525754 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 241 328 8 25 chr1 21138599 21138718 -221525635 - MIR SINE MIR -128 134 18 313 282 8 57 chr1 21139167 21139291 -221525062 - MIR3 SINE MIR -9 199 82 2503 126 67 50 chr1 21139352 21139538 -221524815 + MSTC LTR MaLR 1 182 -246 2116 120 0 3 chr1 21139538 21139839 -221524514 + AluSq SINE Alu 1 300 -13 2503 126 67 50 chr1 21139839 21140073 -221524280 + MSTC LTR MaLR 182 428 0 570 208 0 0 chr1 21140410 21140516 -221523837 + MIR3 SINE MIR 82 187 -21 283 167 152 0 chr1 21140932 21140998 -221523355 + MIR SINE MIR 66 141 -121 312 271 7 57 chr1 21142562 21142702 -221521651 + GA-rich Low_complexity Low_complexity 6 138 0 1003 307 120 7 chr1 21142726 21143342 -221521011 + L2 LINE L2 1980 2665 -649 1248 132 0 0 chr1 21143376 21143558 -221520795 - AluY SINE Alu -129 182 1 714 65 0 0 chr1 21143559 21143651 -221520702 + AluSg/x SINE Alu 185 276 -36 899 63 42 0 chr1 21143658 21143800 -221520553 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 1168 262 65 32 chr1 21143803 21144362 -221519991 + L2 LINE L2 2722 3299 -14 244 300 25 0 chr1 21144362 21144442 -221519911 + GA-rich Low_complexity Low_complexity 3 84 0 244 258 16 0 chr1 21144963 21145025 -221519328 - L3 LINE CR1 -116 1461 1399 367 331 109 11 chr1 21145181 21145365 -221518988 - MIR SINE MIR -60 202 1 298 311 22 11 chr1 21145513 21145603 -221518750 + MIR SINE MIR 59 149 -59 626 269 19 60 chr1 21146024 21146240 -221518113 - MIR SINE MIR -53 209 3 185 339 0 46 chr1 21146939 21147048 -221517305 - MER5B DNA MER1_type -35 143 40 180 176 0 0 chr1 21147237 21147271 -221517082 + T-rich Low_complexity Low_complexity 1 34 0 289 278 19 28 chr1 21147464 21147572 -221516781 + MIR3 SINE MIR 15 121 -87 474 229 70 25 chr1 21147791 21147948 -221516405 + MER103 DNA DNA 1 164 -2 964 232 30 4 chr1 21147958 21148195 -221516158 - MIR SINE MIR -3 259 17 422 300 64 7 chr1 21148750 21148890 -221515463 - L2 LINE L2 -1 3312 3165 631 283 34 24 chr1 21148923 21149128 -221515225 - MIR SINE MIR -8 254 48 265 294 29 114 chr1 21149167 21149412 -221514941 - L2 LINE L2 -192 3080 2857 600 273 49 41 chr1 21149596 21149845 -221514508 + MIR SINE MIR 7 255 -7 449 310 183 49 chr1 21150216 21151065 -221513288 + L2 LINE L2 2308 3271 -1 191 261 43 43 chr1 21151159 21151228 -221513125 - MIR SINE MIR -102 106 38 189 347 28 0 chr1 21151836 21151908 -221512445 - MER5A DNA MER1_type -8 181 108 225 174 43 0 chr1 21152188 21152234 -221512119 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 968 234 181 13 chr1 21153527 21153831 -221510522 - MLT1K LTR MaLR -24 564 210 657 279 93 25 chr1 21153869 21154073 -221510280 - MIR SINE MIR -31 231 14 449 246 73 0 chr1 21154060 21154170 -221510183 - MER5A DNA MER1_type -4 185 68 * 260 288 53 45 chr1 21154268 21154400 -221509953 - MLT1K LTR MaLR -410 178 46 760 232 12 0 chr1 21154405 21154573 -221509780 + MIR SINE MIR 90 259 -3 400 319 125 17 chr1 21154895 21155127 -221509226 + MIR SINE MIR 2 258 -4 418 295 64 56 chr1 21155704 21155862 -221508491 + MIR SINE MIR 8 170 -92 2282 110 0 0 chr1 21155862 21156170 -221508183 + AluSc SINE Alu 1 308 -1 418 295 64 56 chr1 21156170 21156245 -221508108 + MIR SINE MIR 170 243 -19 520 266 49 0 chr1 21156430 21156573 -221507780 + L2 LINE L2 3154 3303 -10 255 189 19 0 chr1 21156584 21156637 -221507716 - L2 LINE L2 0 3272 3219 242 140 0 20 chr1 21157268 21157318 -221507035 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 296 216 0 23 chr1 21157408 21157496 -221506857 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 186 118 0 0 chr1 21157696 21157730 -221506623 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 289 224 104 0 chr1 21157730 21157797 -221506556 - L2 LINE L2 -13 3259 3186 8796 186 64 98 chr1 21158361 21160365 -221503988 + L1MD2 LINE L1 22 2161 -4516 1301 141 0 42 chr1 21160365 21160578 -221503775 - AluJb SINE Alu -27 285 82 8796 186 64 98 chr1 21160578 21161185 -221503168 + L1MD2 LINE L1 2161 2787 -3890 1692 196 15 6 chr1 21161185 21161512 -221502841 + L1MD2 LINE L1 6094 6423 -330 336 274 62 0 chr1 21162003 21162116 -221502237 + L2 LINE L2 3152 3271 -1 2023 103 0 82 chr1 21162173 21162502 -221501851 + AluSx SINE Alu 1 302 -10 450 225 49 35 chr1 21162967 21163109 -221501244 + MIR SINE MIR 42 185 -77 258 206 0 0 chr1 21163281 21163349 -221501004 + (ATG)n Simple_repeat Simple_repeat 2 69 0 342 289 122 32 chr1 21163370 21163526 -221500827 - MIR SINE MIR -14 248 79 283 326 118 69 chr1 21163675 21164022 -221500331 - L2 LINE L2 0 3272 2909 428 306 218 0 chr1 21164455 21164661 -221499692 + MIR SINE MIR 11 261 -1 186 259 0 35 chr1 21164642 21164700 -221499653 - MIR SINE MIR -99 163 108 * 573 241 55 0 chr1 21165162 21165307 -221499046 + MIR3 SINE MIR 34 186 -22 941 262 9 9 chr1 21165915 21166140 -221498213 + MIR SINE MIR 34 258 -4 423 257 143 6 chr1 21166430 21166605 -221497748 - MIR3 SINE MIR -7 201 3 392 292 18 0 chr1 21167197 21167310 -221497043 + MIR SINE MIR 77 191 -71 291 273 45 34 chr1 21167355 21167443 -221496910 - MIR SINE MIR -56 152 64 820 251 30 0 chr1 21167468 21167671 -221496682 - MIR SINE MIR -40 222 14 372 272 34 41 chr1 21167809 21167956 -221496397 + MIR SINE MIR 67 212 -50 437 285 29 22 chr1 21168265 21168402 -221495951 - MIR SINE MIR -72 190 53 225 248 88 48 chr1 21168456 21168581 -221495772 - MIR SINE MIR -113 149 20 204 224 112 41 chr1 21168660 21168758 -221495595 - MIR SINE MIR -58 150 46 * 217 245 25 110 chr1 21168686 21168849 -221495504 + MIR3 SINE MIR 36 184 -24 379 344 8 0 chr1 21168868 21168993 -221495360 - MER5A DNA MER1_type 0 189 64 468 276 82 0 chr1 21169285 21169419 -221494934 - L2 LINE L2 0 3313 3169 180 121 30 0 chr1 21169512 21169545 -221494808 - MIR SINE MIR -117 145 112 260 287 44 59 chr1 21169792 21169928 -221494425 - L2 LINE L2 -2 3270 3137 764 242 16 6 chr1 21169989 21170171 -221494182 - MIR SINE MIR -38 224 41 230 316 32 42 chr1 21171682 21171777 -221492576 - MIR SINE MIR -135 127 34 227 178 22 0 chr1 21171811 21171823 -221492530 + MER34C LTR ERV1 25 37 -548 387 103 29 0 chr1 21171823 21171891 -221492462 + MER34B LTR ERV1 1 70 -495 922 136 0 0 chr1 21171891 21172023 -221492330 + AluJ SINE Alu 1 132 -170 21 0 0 0 chr1 21172023 21172044 -221492309 + AT_rich Low_complexity Low_complexity 1 21 0 6482 91 12 8 chr1 21172054 21173541 -221490812 + L1PA11 LINE L1 4680 6171 -3 917 183 77 0 chr1 21173550 21173719 -221490634 + AluJ SINE Alu 131 312 0 2610 150 31 0 chr1 21173740 21174194 -221490159 + MER34B LTR ERV1 77 544 -21 247 299 80 45 chr1 21174330 21174594 -221489759 - L2 LINE L2 -189 3083 2811 276 111 0 0 chr1 21174698 21174743 -221489610 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 252 188 0 31 chr1 21174751 21174815 -221489538 + (TGAA)n Simple_repeat Simple_repeat 4 65 0 347 237 161 0 chr1 21174858 21174951 -221489402 + MIR SINE MIR 33 140 -68 218 205 0 0 chr1 21177100 21177139 -221487214 - L3 LINE CR1 -15 1562 1524 975 118 0 20 chr1 21177149 21177301 -221487052 - L1PA16 LINE L1 0 6166 6018 192 97 0 0 chr1 21177461 21177492 -221486861 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 660 302 79 50 chr1 21177496 21177913 -221486440 - L2 LINE L2 -18 3295 2867 371 307 44 0 chr1 21178014 21178151 -221486202 - MIR3 SINE MIR -48 160 18 466 272 204 5 chr1 21178794 21179000 -221485353 + MIR SINE MIR 10 256 -6 297 75 0 0 chr1 21179206 21179246 -221485107 + (TG)n Simple_repeat Simple_repeat 1 40 0 355 353 58 51 chr1 21179371 21179666 -221484687 + L3 LINE CR1 332 628 -949 1155 268 63 40 chr1 21179722 21180118 -221484235 - L2 LINE L2 -3 3310 2906 318 156 0 52 chr1 21180278 21180355 -221483998 - L2 LINE L2 -386 2886 2814 185 268 42 42 chr1 21180355 21180426 -221483927 - L2 LINE L2 -694 2620 2550 * 739 276 131 0 chr1 21180403 21180624 -221483729 + MIR SINE MIR 5 254 -8 2577 171 34 3 chr1 21180629 21181127 -221483226 + L1MD3 LINE L1 6129 6254 -79 2077 128 24 7 chr1 21181272 21181568 -221482785 - AluSx SINE Alu -10 302 2 183 412 35 0 chr1 21181574 21181659 -221482694 + L3 LINE CR1 1393 1480 -97 494 268 124 0 chr1 21181938 21182091 -221482262 + MIR SINE MIR 10 181 -81 446 321 71 31 chr1 21182879 21183075 -221481278 - MIR SINE MIR -14 248 45 272 271 94 0 chr1 21183127 21183212 -221481141 - L2 LINE L2 -43 3229 3137 274 326 0 0 chr1 21183511 21183597 -221480756 + MIR SINE MIR 7 92 -170 1370 250 234 32 chr1 21183731 21184474 -221479879 - L2 LINE L2 0 3313 2383 4504 235 138 42 chr1 21184476 21186483 -221477870 + HAL1 LINE L1 1 2285 -222 4174 233 43 23 chr1 21186483 21188355 -221475998 + L1MB7 LINE L1 4 2248 -4711 * 6779 190 51 10 chr1 21188351 21189137 -221475216 + L1MB7 LINE L1 4455 5208 -1787 1923 148 3 10 chr1 21189137 21189428 -221474925 + AluJb SINE Alu 1 289 -23 6779 190 51 10 chr1 21189428 21191069 -221473284 + L1MB7 LINE L1 5208 6983 -12 521 233 89 20 chr1 21191098 21191300 -221473053 + HAL1 LINE L1 2292 2507 0 618 238 124 19 chr1 21191647 21191857 -221472496 - MIR SINE MIR -19 243 12 357 277 40 10 chr1 21192241 21192342 -221472011 - MIR3 SINE MIR -27 181 78 2354 86 0 3 chr1 21192489 21192779 -221471574 + AluSx SINE Alu 11 299 -13 1184 101 6 6 chr1 21192779 21192938 -221471415 + AluSg/x SINE Alu 134 292 -20 203 133 0 0 chr1 21192999 21193029 -221471324 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 542 246 15 30 chr1 21193096 21193230 -221471123 + MIR SINE MIR 28 159 -103 652 158 167 0 chr1 21193236 21193350 -221471003 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr1 21193350 21193371 -221470982 + AT_rich Low_complexity Low_complexity 1 21 0 214 143 0 0 chr1 21193798 21193833 -221470520 - MIR SINE MIR -59 149 115 1841 185 3 0 chr1 21194475 21194767 -221469586 + AluJb SINE Alu 1 293 -19 432 310 25 6 chr1 21194781 21194939 -221469414 + L2 LINE L2 3151 3311 -2 441 269 110 0 chr1 21194989 21195134 -221469219 - MIR SINE MIR -55 207 47 326 291 0 47 chr1 21195418 21195545 -221468808 + GA-rich Low_complexity Low_complexity 2 122 0 469 189 180 0 chr1 21196388 21196510 -221467843 + MER45A DNA AcHobo 34 177 -1 209 314 129 0 chr1 21196591 21196661 -221467692 - MIR SINE MIR -21 241 163 372 227 9 82 chr1 21196727 21196771 -221467582 - MER5A DNA MER1_type -84 105 59 2097 128 16 0 chr1 21196771 21197076 -221467277 - AluSx SINE Alu -2 310 1 372 227 9 82 chr1 21197076 21197141 -221467212 - MER5A DNA MER1_type -130 59 4 875 219 77 9 chr1 21197263 21197496 -221466857 + LTR16A1 LTR ERVL 209 457 0 347 259 161 0 chr1 21197496 21197608 -221466745 - MIR SINE MIR -99 163 34 1254 109 36 0 chr1 21197945 21198137 -221466216 + MSTA LTR MaLR 1 199 -229 2311 114 0 0 chr1 21198141 21198440 -221465913 + AluSp SINE Alu 1 299 -14 718 129 17 0 chr1 21198553 21198669 -221465684 + AluSg/x SINE Alu 179 296 -16 387 307 12 91 chr1 21198670 21198911 -221465442 - L2 LINE L2 -621 2693 2472 566 234 99 14 chr1 21199273 21199414 -221464939 + MIR3 SINE MIR 16 168 -40 938 280 172 6 chr1 21199414 21199775 -221464578 + MLT1K LTR MaLR 161 581 -7 255 192 75 92 chr1 21199841 21199961 -221464392 + L2 LINE L2 2942 3059 -213 528 216 85 20 chr1 21200023 21200176 -221464177 - MER103 DNA DNA -2 164 2 209 343 0 0 chr1 21200307 21200374 -221463979 - L2 LINE L2 -23 3290 3224 319 327 63 0 chr1 21200418 21200537 -221463816 + MIR3 SINE MIR 43 169 -39 385 291 9 0 chr1 21200537 21200647 -221463706 + MLT1K LTR MaLR 161 271 -317 2306 129 0 0 chr1 21200726 21201036 -221463317 + AluSx SINE Alu 1 310 -2 563 309 32 18 chr1 21201240 21201457 -221462896 + MIR SINE MIR 33 256 -6 1590 279 49 27 chr1 21201780 21202335 -221462018 + MLT1E LTR MaLR 27 593 0 324 240 80 60 chr1 21202335 21202447 -221461906 - MLT1K LTR MaLR -49 539 425 273 286 0 0 chr1 21202447 21202531 -221461822 - LTR16C LTR ERVL 0 491 408 326 266 43 22 chr1 21202592 21202731 -221461622 - LTR16C LTR ERVL -251 240 99 640 271 45 14 chr1 21202818 21203039 -221461314 - MLT1K LTR MaLR -163 425 198 536 215 31 63 chr1 21203200 21203277 -221461076 - MER112 DNA MER1_type -36 224 146 915 127 9 167 chr1 21203277 21203498 -221460855 - MER5A DNA MER1_type 0 189 4 536 215 31 63 chr1 21203498 21203611 -221460742 - MER112 DNA MER1_type -114 146 40 2369 116 0 0 chr1 21203611 21203921 -221460432 - AluSx SINE Alu -2 310 1 334 265 120 16 chr1 21203953 21204071 -221460282 - MIR SINE MIR -92 116 2 636 232 119 8 chr1 21204150 21204471 -221459882 - MLT1J LTR MaLR -28 483 84 452 310 120 0 chr1 21205624 21205808 -221458545 - MIR SINE MIR -6 256 51 253 181 0 28 chr1 21207640 21207712 -221456641 + (CA)n Simple_repeat Simple_repeat 1 70 0 201 317 67 10 chr1 21208095 21208199 -221456154 + MIR SINE MIR 22 131 -77 1952 130 31 20 chr1 21208290 21208582 -221455771 + AluSx SINE Alu 1 295 -17 451 239 172 18 chr1 21208827 21208995 -221455358 + MIR3 SINE MIR 7 196 -12 198 322 59 9 chr1 21209135 21209251 -221455102 - MIR SINE MIR -98 164 40 688 258 56 14 chr1 21209257 21209470 -221454883 - MIR SINE MIR -38 224 3 244 172 94 16 chr1 21209768 21209832 -221454521 - MLT1J LTR MaLR -179 416 348 353 177 13 51 chr1 21209850 21209929 -221454424 - MLT1H LTR MaLR -251 298 223 198 136 0 0 chr1 21209929 21209973 -221454380 + (GA)n Simple_repeat Simple_repeat 2 45 0 995 204 54 5 chr1 21209973 21210194 -221454159 - MLT1H LTR MaLR -317 232 1 359 224 9 95 chr1 21210244 21210360 -221453993 - MIR3 SINE MIR -8 200 95 729 272 40 18 chr1 21210663 21210887 -221453466 - MIR SINE MIR 0 262 34 1959 114 0 42 chr1 21211049 21211338 -221453015 + AluSx SINE Alu 19 295 -17 1037 266 38 13 chr1 21211353 21211590 -221452763 + MIR SINE MIR 20 262 0 864 262 128 52 chr1 21212708 21213131 -221451222 + L2 LINE L2 2844 3298 -15 277 227 80 34 chr1 21213154 21213242 -221451111 - MIR SINE MIR -73 189 98 2065 165 139 35 chr1 21213259 21213775 -221450578 + L1ME1 LINE L1 5494 6063 -103 325 250 11 43 chr1 21213781 21213873 -221450480 + MER21B LTR ERV1 1 89 -774 2212 237 18 82 chr1 21213947 21214321 -221450032 + MER21B LTR ERV1 133 439 -424 1990 154 20 0 chr1 21214321 21214613 -221449740 + AluSx SINE Alu 6 303 -9 2212 237 18 82 chr1 21214613 21214965 -221449388 + MER21B LTR ERV1 439 812 -51 476 204 0 35 chr1 21215003 21215116 -221449237 + L1ME1 LINE L1 6054 6162 -4 232 238 238 0 chr1 21215116 21215196 -221449157 + MIR3 SINE MIR 14 112 -96 417 267 25 17 chr1 21215398 21215518 -221448835 - MER115 DNA AcHobo -382 311 191 * 596 165 0 0 chr1 21215508 21215605 -221448748 + MER21B LTR ERV1 239 335 -528 458 320 56 0 chr1 21215692 21215870 -221448483 - MER115 DNA AcHobo -498 195 8 590 283 49 26 chr1 21216099 21216334 -221448019 - MIR SINE MIR -9 253 16 806 201 75 0 chr1 21216446 21216605 -221447748 - FRAM SINE Alu -1 175 5 2370 101 7 0 chr1 21216864 21217170 -221447183 + AluSx SINE Alu 1 308 -4 342 224 0 0 chr1 21217246 21217362 -221446991 + (TG)n Simple_repeat Simple_repeat 2 117 0 603 202 0 8 chr1 21217373 21218025 -221446328 + (TG)n Simple_repeat Simple_repeat 1 646 0 728 240 22 11 chr1 21218204 21218387 -221445966 - MIR SINE MIR -2 260 76 2520 80 0 0 chr1 21218701 21219003 -221445350 + AluSx SINE Alu 1 302 -10 254 182 234 13 chr1 21219126 21219203 -221445150 - MIR3 SINE MIR -25 183 90 341 319 0 18 chr1 21219856 21219969 -221444384 - L2 LINE L2 0 3313 3203 730 261 58 19 chr1 21220236 21220443 -221443910 - MIR SINE MIR -35 227 13 456 263 17 0 chr1 21220714 21220832 -221443521 + L2 LINE L2 3188 3307 -6 324 308 17 25 chr1 21220897 21221017 -221443336 - MER5A DNA MER1_type -43 146 28 2024 137 33 38 chr1 21221282 21221648 -221442705 + THE1B LTR MaLR 1 364 0 318 252 35 21 chr1 21221751 21221894 -221442459 + GA-rich Low_complexity Low_complexity 2 146 0 1905 170 0 7 chr1 21222086 21222386 -221441967 - AluJo SINE Alu -14 298 1 203 244 0 0 chr1 21222616 21222661 -221441692 + MIR3 SINE MIR 120 164 -44 502 282 257 23 chr1 21222748 21223145 -221441208 + L2 LINE L2 2824 3313 0 180 248 324 0 chr1 21223222 21223327 -221441026 - MIR SINE MIR -96 166 28 541 234 16 16 chr1 21223872 21224000 -221440353 + MIR SINE MIR 20 147 -115 220 243 115 47 chr1 21224109 21224257 -221440096 + L2 LINE L2 2934 3091 -181 381 284 14 24 chr1 21224373 21224540 -221439813 + GA-rich Low_complexity Low_complexity 2 289 0 463 300 64 36 chr1 21225306 21225526 -221438827 - MIR SINE MIR -1 261 36 643 278 40 29 chr1 21225710 21225983 -221438370 - L1ME4a LINE L1 -232 5889 5614 207 283 0 0 chr1 21226314 21226367 -221437986 - MIR SINE MIR -119 143 91 438 231 0 0 chr1 21226633 21226776 -221437577 + (TG)n Simple_repeat Simple_repeat 2 144 0 286 329 75 33 chr1 21226807 21227047 -221437306 + MIR SINE MIR 12 261 -1 246 258 0 45 chr1 21227087 21227153 -221437200 - L2 LINE L2 0 3313 3251 271 295 21 0 chr1 21227244 21227339 -221437014 + MIR SINE MIR 68 164 -98 2253 119 0 0 chr1 21227516 21227819 -221436534 + AluSx SINE Alu 1 303 -9 540 233 30 8 chr1 21228272 21228405 -221435948 + MIR SINE MIR 127 262 0 361 306 52 96 chr1 21228558 21228737 -221435616 - L2 LINE L2 -97 3175 3021 2381 98 3 9 chr1 21228737 21229052 -221435301 - AluSq SINE Alu 0 313 1 361 306 52 96 chr1 21229052 21229258 -221435095 - L2 LINE L2 -251 3021 2807 2332 108 7 0 chr1 21229285 21229592 -221434761 - AluY SINE Alu -2 309 1 1287 193 8 4 chr1 21229606 21229871 -221434482 + L1MD3 LINE L1 7730 7995 0 321 322 201 21 chr1 21229877 21230166 -221434187 - L2 LINE L2 -541 2773 2433 2117 140 7 3 chr1 21230351 21230659 -221433694 - AluSx SINE Alu -3 309 1 336 288 67 71 chr1 21230759 21231026 -221433327 - MLT1K LTR MaLR -306 282 17 685 268 29 61 chr1 21231663 21231909 -221432444 + MIR SINE MIR 20 257 -5 239 191 16 0 chr1 21231957 21232020 -221432333 + (TGGA)n Simple_repeat Simple_repeat 4 67 0 528 194 0 0 chr1 21232080 21232214 -221432139 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 1962 171 30 30 chr1 21232226 21232373 -221431980 + MSTD LTR MaLR 4 150 -246 2462 77 0 0 chr1 21232373 21232670 -221431683 - AluY SINE Alu -14 297 1 1962 171 30 30 chr1 21232670 21232915 -221431438 + MSTD LTR MaLR 149 396 0 311 158 0 26 chr1 21232941 21233017 -221431336 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 238 380 0 19 chr1 21233036 21233144 -221431209 - L2 LINE L2 -88 3184 3079 350 355 50 0 chr1 21233741 21233882 -221430471 + MIR3 SINE MIR 45 192 -16 304 321 45 8 chr1 21233945 21234079 -221430274 + MIR SINE MIR 82 220 -42 237 244 139 0 chr1 21234221 21234307 -221430046 - MIR SINE MIR -79 129 32 240 35 0 0 chr1 21234588 21234617 -221429736 + (CTG)n Simple_repeat Simple_repeat 2 30 0 585 323 15 0 chr1 21234752 21234950 -221429403 + MIR SINE MIR 11 211 -51 455 301 118 6 chr1 21234961 21235318 -221429035 - LTR16A LTR ERVL -6 444 3 705 188 0 0 chr1 21235352 21235501 -221428852 + (CAT)n Simple_repeat Simple_repeat 2 150 0 752 193 17 0 chr1 21235525 21235701 -221428652 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 549 241 0 0 chr1 21236412 21236582 -221427771 + (CACCAT)n Simple_repeat Simple_repeat 4 173 0 498 303 21 43 chr1 21236611 21236799 -221427554 - MIR SINE MIR -65 197 14 468 325 160 19 chr1 21237214 21237590 -221426763 + L2 LINE L2 2844 3272 0 199 181 12 133 chr1 21237870 21237953 -221426400 - MIR SINE MIR -72 136 64 202 316 0 0 chr1 21238142 21238199 -221426154 + C-rich Low_complexity Low_complexity 2 58 0 531 326 67 32 chr1 21238766 21239229 -221425124 + L2 LINE L2 2462 2940 -374 1122 245 146 32 chr1 21239343 21239869 -221424484 + MLT2F LTR ERVL 22 607 -56 181 337 24 0 chr1 21240003 21240086 -221424267 + L2 LINE L2 3164 3248 -24 292 280 144 8 chr1 21241543 21241675 -221422678 - MIR SINE MIR -76 186 37 188 276 35 0 chr1 21242171 21242229 -221422124 - MIR SINE MIR -202 60 1 1143 208 117 47 chr1 21242268 21242609 -221421744 - MLT1A1 LTR MaLR 0 365 1 999 103 0 0 chr1 21242620 21242766 -221421587 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 258 172 35 0 chr1 21243143 21243201 -221421152 + (GCTG)n Simple_repeat Simple_repeat 4 63 0 943 191 38 24 chr1 21243813 21244022 -221420331 - MIR SINE MIR 0 262 51 391 254 46 101 chr1 21244057 21244133 -221420220 - L1ME4a LINE L1 -225 5896 5817 2254 85 0 3 chr1 21244133 21244456 -221419897 - AluSq SINE Alu 0 323 2 391 254 46 101 chr1 21244456 21244594 -221419759 - L1ME4a LINE L1 -304 5817 5692 610 316 93 29 chr1 21245028 21245436 -221418917 - L2 LINE L2 -3 3269 2836 199 246 297 25 chr1 21245824 21245942 -221418411 - MIR SINE MIR -13 249 100 207 289 0 0 chr1 21246543 21246595 -221417758 + MIR SINE MIR 80 131 -131 581 198 30 84 chr1 21246705 21246834 -221417519 + MIR SINE MIR 86 206 -56 1758 172 6 19 chr1 21246834 21247148 -221417205 + AluJo SINE Alu 2 311 -1 581 198 30 84 chr1 21247148 21247185 -221417168 + MIR SINE MIR 206 243 -19 256 333 28 9 chr1 21247204 21247312 -221417041 + MIR SINE MIR 150 259 -3 278 213 16 0 chr1 21247341 21247402 -221416951 - MIR SINE MIR -118 144 83 1211 147 18 18 chr1 21247431 21247649 -221416704 - MER20 DNA MER1_type -1 218 1 234 218 82 73 chr1 21248012 21248122 -221416231 + L2 LINE L2 3160 3270 -2 429 251 83 113 chr1 21248197 21248221 -221416132 + MIR SINE MIR 7 30 -232 2517 73 0 3 chr1 21248221 21248523 -221415830 + AluSq SINE Alu 1 301 -12 429 251 83 113 chr1 21248523 21248746 -221415607 + MIR SINE MIR 30 237 -25 189 222 79 16 chr1 21249548 21249611 -221414742 - MIR3 SINE MIR -25 183 117 * 756 292 29 12 chr1 21249598 21249838 -221414515 + MIR SINE MIR 13 256 -6 189 256 0 0 chr1 21249857 21249900 -221414453 - MIR SINE MIR -117 91 49 271 81 0 0 chr1 21251100 21251137 -221413216 + L1MC3 LINE L1 7059 7095 -690 348 286 0 0 chr1 21251139 21251230 -221413123 + MLT1F1 LTR MaLR 35 125 -442 2234 177 128 9 chr1 21251230 21251761 -221412592 + L1MC3 LINE L1 7189 7782 -3 427 200 0 22 chr1 21251932 21252022 -221412331 + L2 LINE L2 3225 3312 -1 333 279 78 8 chr1 21252518 21252647 -221411706 - MIR SINE MIR -100 162 25 628 191 30 0 chr1 21253520 21253651 -221410702 + MIR SINE MIR 47 181 -81 449 278 117 17 chr1 21254722 21254902 -221409451 - MIR SINE MIR -48 214 17 324 0 0 0 chr1 21255681 21255717 -221408636 + (TG)n Simple_repeat Simple_repeat 2 37 0 188 75 0 50 chr1 21256228 21256268 -221408085 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 204 40 0 0 chr1 21256284 21256309 -221408044 + (TCC)n Simple_repeat Simple_repeat 2 26 0 35 95 0 0 chr1 21258212 21258317 -221406036 + GC_rich Low_complexity Low_complexity 1 105 0 29 0 0 0 chr1 21258497 21258526 -221405827 + GC_rich Low_complexity Low_complexity 1 29 0 13048 48 42 65 chr1 21258801 21258826 -221405527 + HUERS-P1 LTR ERV1 2344 2368 -3895 2321 101 7 0 chr1 21258826 21259134 -221405219 + AluSp SINE Alu 1 310 -3 13048 48 42 65 chr1 21259134 21259456 -221404897 + HUERS-P1 LTR ERV1 2368 2696 -3567 2215 91 25 7 chr1 21259456 21259741 -221404612 + AluSq SINE Alu 1 290 -23 13048 48 42 65 chr1 21259741 21259778 -221404575 + HUERS-P1 LTR ERV1 2696 2732 -3531 2519 87 0 0 chr1 21259778 21260090 -221404263 + AluSx SINE Alu 1 312 0 13048 48 42 65 chr1 21260090 21260871 -221403482 + HUERS-P1 LTR ERV1 2732 3530 -2733 2124 101 35 0 chr1 21260871 21261157 -221403196 + AluSx SINE Alu 5 300 -12 13048 48 42 65 chr1 21261157 21261351 -221403002 + HUERS-P1 LTR ERV1 3530 3727 -2536 2374 88 3 0 chr1 21261351 21261645 -221402708 + AluSq SINE Alu 1 295 -18 2210 104 31 0 chr1 21261651 21261939 -221402414 + AluSx SINE Alu 1 297 -15 13048 48 42 65 chr1 21261939 21262609 -221401744 + HUERS-P1 LTR ERV1 3732 4337 -1926 3697 70 2 12 chr1 21262609 21263108 -221401245 - LTR8 LTR ERV1 -197 494 1 4424 40 54 15 chr1 21263108 21263704 -221400649 - HUERS-P1 LTR ERV1 0 6263 5645 1905 105 4 16 chr1 21263704 21263961 -221400392 + AluSx SINE Alu 47 300 -12 412 296 31 31 chr1 21263968 21264127 -221400226 - MIR3 SINE MIR -25 183 25 567 106 0 12 chr1 21264250 21264335 -221400018 + LTR8 LTR ERV1 503 586 -105 1012 173 5 13 chr1 21264375 21264592 -221399761 - L1M4 LINE L1 -945 5201 4990 2672 53 0 0 chr1 21264592 21264893 -221399460 + AluY SINE Alu 1 301 -10 1012 173 5 13 chr1 21264893 21264910 -221399443 - L1M4 LINE L1 -1156 4990 4974 382 211 81 32 chr1 21264924 21265047 -221399306 - MIR SINE MIR -32 230 102 421 289 31 31 chr1 21265778 21265937 -221398416 + MIR3 SINE MIR 25 183 -25 2407 83 3 16 chr1 21265944 21266257 -221398096 - AluSx SINE Alu -3 309 1 184 339 40 32 chr1 21266335 21266459 -221397894 + MIR SINE MIR 82 206 -56 243 220 186 0 chr1 21266529 21266588 -221397765 + L2 LINE L2 3244 3313 0 367 310 26 9 chr1 21266598 21266711 -221397642 - L3 LINE CR1 -44 1533 1419 612 200 8 15 chr1 21267049 21267179 -221397174 + MLT1L LTR MaLR 133 261 -354 2440 33 0 4 chr1 21267493 21267796 -221396557 - AluY SINE Alu 0 309 8 284 208 154 87 chr1 21267801 21267950 -221396403 - MLT1K LTR MaLR -11 577 419 513 302 22 11 chr1 21268005 21268187 -221396166 - MLT1K LTR MaLR -258 330 147 2402 99 3 6 chr1 21268562 21268876 -221395477 - AluSq SINE Alu 0 313 1 388 286 250 0 chr1 21269936 21270076 -221394277 - MER96 DNA MER1_type? 0 175 1 329 224 63 69 chr1 21270076 21270250 -221394103 - MLT1K LTR MaLR -38 550 378 2380 109 3 0 chr1 21270707 21271018 -221393335 + AluSx SINE Alu 1 312 0 1409 232 100 46 chr1 21271632 21271823 -221392530 + MLT1J LTR MaLR 5 184 -327 2221 102 3 0 chr1 21271823 21272131 -221392222 - AluSp SINE Alu 0 309 1 1409 232 100 46 chr1 21272131 21272417 -221391936 + MLT1J LTR MaLR 184 509 -2 727 257 19 15 chr1 21272454 21272660 -221391693 + L2 LINE L2 3107 3313 0 298 278 166 30 chr1 21272639 21272808 -221391545 - MIR SINE MIR -59 203 12 * 285 318 66 0 chr1 21272994 21273145 -221391208 - MER104 DNA Tc2 -1 179 19 269 341 61 30 chr1 21273372 21273504 -221390849 + L2 LINE L2 3173 3308 -5 282 211 0 42 chr1 21274356 21274427 -221389926 - L2 LINE L2 -5 3308 3241 845 144 0 0 chr1 21274478 21274596 -221389757 + FLAM_C SINE Alu 1 118 -25 1101 158 15 15 chr1 21274660 21274856 -221389497 + MLT1D LTR MaLR 1 196 -309 642 179 0 26 chr1 21274857 21274974 -221389379 + FLAM_A SINE Alu 4 117 -16 964 166 7 0 chr1 21275004 21275155 -221389198 - FRAM SINE Alu -24 152 1 1150 209 21 28 chr1 21275185 21275334 -221389019 + MLT1D LTR MaLR 226 375 -130 1843 172 0 13 chr1 21275334 21275637 -221388716 + AluJo SINE Alu 1 299 -13 1150 209 21 28 chr1 21275637 21275648 -221388705 + MLT1D LTR MaLR 375 385 -120 2214 79 14 24 chr1 21275648 21275938 -221388415 + AluSx SINE Alu 13 299 -13 1150 209 21 28 chr1 21275938 21276058 -221388295 + MLT1D LTR MaLR 385 505 0 778 303 58 63 chr1 21276058 21276576 -221387777 - L2 LINE L2 -170 3143 2633 3293 89 16 0 chr1 21276576 21277027 -221387326 + LTR22A LTR ERVK 1 458 0 778 303 58 63 chr1 21277027 21277249 -221387104 - L2 LINE L2 -680 2633 2411 1008 178 0 6 chr1 21277280 21277443 -221386910 - AluJo SINE Alu -29 283 122 2359 277 154 31 chr1 21277446 21278570 -221385783 - L2 LINE L2 -978 2336 1075 1773 196 48 65 chr1 21278571 21278683 -221385670 + MLT1D LTR MaLR 13 125 -380 585 132 142 9 chr1 21278683 21278789 -221385564 + FLAM_A SINE Alu 1 120 -13 1773 196 48 65 chr1 21278789 21279208 -221385145 + MLT1D LTR MaLR 125 505 0 462 227 232 20 chr1 21279226 21279424 -221384929 - L2 LINE L2 -2284 1030 791 2141 102 53 0 chr1 21279424 21279708 -221384645 + AluSx SINE Alu 1 299 -13 771 209 62 25 chr1 21279708 21279926 -221384427 + MLT1F1 LTR MaLR 357 567 0 2091 117 19 13 chr1 21280087 21280222 -221384131 + AluSx SINE Alu 1 134 -178 2459 78 0 0 chr1 21280222 21280536 -221383817 + AluY SINE Alu 1 311 0 2091 117 19 13 chr1 21280536 21280707 -221383646 + AluSx SINE Alu 134 309 -3 391 242 75 8 chr1 21280744 21280864 -221383489 + L2 LINE L2 3183 3310 -3 1700 147 102 0 chr1 21280962 21281227 -221383126 + AluJb SINE Alu 1 292 -20 687 216 30 6 chr1 21281678 21281885 -221382468 + MIR SINE MIR 52 262 0 381 43 0 0 chr1 21282026 21282073 -221382280 + (CA)n Simple_repeat Simple_repeat 1 47 0 1258 114 55 9 chr1 21282409 21282629 -221381724 + MER30 DNA MER1_type 1 230 0 529 330 102 18 chr1 21282694 21283180 -221381173 - L2 LINE L2 -1 3312 2785 2589 227 11 4 chr1 21283193 21283726 -221380627 - MLT1F LTR MaLR -5 537 1 1549 127 75 34 chr1 21283815 21284082 -221380271 + AluJb SINE Alu 11 288 -24 2558 135 107 58 chr1 21284245 21284755 -221379598 - MER21A LTR ERV1 -24 907 266 1808 132 0 0 chr1 21284755 21285006 -221379347 - AluSx SINE Alu -7 305 55 2558 135 107 58 chr1 21285006 21285286 -221379067 - MER21A LTR ERV1 -665 266 1 349 313 106 38 chr1 21285637 21286005 -221378348 + HAL1 LINE L1 277 669 -1838 233 250 95 12 chr1 21286105 21286189 -221378164 + HAL1 LINE L1 780 870 -1637 2338 72 10 7 chr1 21286223 21286513 -221377840 - AluSx SINE Alu -21 291 1 370 288 174 0 chr1 21286712 21286844 -221377509 - MIR3 SINE MIR -18 190 36 741 171 0 0 chr1 21286910 21287033 -221377320 - FRAM SINE Alu -14 162 40 711 267 100 46 chr1 21287179 21287568 -221376785 + L2 LINE L2 2898 3307 -6 2402 91 3 3 chr1 21287763 21288071 -221376282 - AluSg SINE Alu -2 308 1 1074 147 81 59 chr1 21288237 21288315 -221376038 - MER21A LTR ERV1 -475 456 381 1776 138 0 0 chr1 21288315 21288569 -221375784 - AluSx SINE Alu -4 308 55 1074 147 81 59 chr1 21288569 21288849 -221375504 - MER21A LTR ERV1 -550 381 1 305 322 131 34 chr1 21289005 21289570 -221374783 + HAL1 LINE L1 50 669 -1838 233 250 95 12 chr1 21289670 21289754 -221374599 + HAL1 LINE L1 780 870 -1637 2303 80 10 3 chr1 21289788 21290077 -221374276 - AluSx SINE Alu -21 291 1 1746 168 31 7 chr1 21290159 21290445 -221373908 + AluSx SINE Alu 1 293 -19 4487 139 76 21 chr1 21290445 21290869 -221373484 + L1MB2 LINE L1 5225 5624 -547 2365 81 0 7 chr1 21290869 21291164 -221373189 - AluSq SINE Alu -17 296 4 4487 139 76 21 chr1 21291164 21291638 -221372715 + L1MB2 LINE L1 5624 6170 -1 1461 243 99 69 chr1 21291656 21292218 -221372135 + HAL1 LINE L1 963 1507 -1000 2121 117 133 0 chr1 21292218 21292594 -221371759 + MSTA LTR MaLR 3 428 0 1461 243 99 69 chr1 21292594 21292940 -221371413 + HAL1 LINE L1 1507 1841 -666 2543 73 0 13 chr1 21292940 21293254 -221371099 - AluY SINE Alu 0 311 2 1461 243 99 69 chr1 21293254 21293434 -221370919 + HAL1 LINE L1 1841 2014 -493 2517 67 0 13 chr1 21293434 21293746 -221370607 + AluY SINE Alu 1 308 -3 1461 243 99 69 chr1 21293746 21293934 -221370419 + HAL1 LINE L1 2014 2195 -312 2199 99 35 0 chr1 21293934 21294218 -221370135 + AluSx SINE Alu 1 294 -18 1461 243 99 69 chr1 21294218 21294359 -221369994 + HAL1 LINE L1 2195 2499 -8 1960 128 8 70 chr1 21294593 21294820 -221369533 + MER1B DNA MER1_type 2 201 -2509 2358 109 3 0 chr1 21294820 21295122 -221369231 + AluSx SINE Alu 1 303 -9 1960 128 8 70 chr1 21295122 21295252 -221369101 + MER1B DNA MER1_type 201 337 0 2046 153 0 0 chr1 21295600 21295895 -221368458 + AluSx SINE Alu 1 295 -17 1658 169 32 35 chr1 21296000 21296118 -221368235 + AluJb SINE Alu 1 118 -194 2622 57 3 0 chr1 21296118 21296418 -221367935 - AluSp SINE Alu -12 301 1 1658 169 32 35 chr1 21296418 21296612 -221367741 + AluJb SINE Alu 118 312 0 201 303 50 30 chr1 21297606 21297705 -221366648 + MIR SINE MIR 8 108 -154 200 195 0 24 chr1 21298380 21298421 -221365932 + G-rich Low_complexity Low_complexity 4 43 0 251 111 0 19 chr1 21299696 21299750 -221364603 + (GGA)n Simple_repeat Simple_repeat 3 55 0 36 23 0 0 chr1 21299811 21299854 -221364499 + GC_rich Low_complexity Low_complexity 1 43 0 815 153 0 0 chr1 21299915 21300033 -221364320 + FLAM_C SINE Alu 1 118 -25 476 233 28 50 chr1 21300555 21300735 -221363618 + GA-rich Low_complexity Low_complexity 2 177 0 25 0 0 0 chr1 21300866 21300891 -221363462 + GC_rich Low_complexity Low_complexity 1 25 0 192 77 0 0 chr1 21301340 21301366 -221362987 + (AGGGGG)n Simple_repeat Simple_repeat 5 30 0 449 325 83 38 chr1 21302062 21302302 -221362051 + MIR SINE MIR 2 252 -10 371 253 127 13 chr1 21302368 21302526 -221361827 - MIR3 SINE MIR -24 184 9 264 187 112 96 chr1 21302668 21302848 -221361505 - MIR SINE MIR -47 215 36 211 217 167 0 chr1 21303276 21303336 -221361017 - MIR SINE MIR -63 145 76 464 256 156 10 chr1 21303652 21303707 -221360646 + MIR SINE MIR 1 47 -215 1783 184 0 3 chr1 21303707 21304000 -221360353 + AluJo SINE Alu 1 292 -20 464 256 156 10 chr1 21304000 21304180 -221360173 + MIR SINE MIR 47 262 0 182 255 0 0 chr1 21304418 21304465 -221359888 + MIR3 SINE MIR 152 198 -10 459 0 0 0 chr1 21305064 21305115 -221359238 + (CA)n Simple_repeat Simple_repeat 1 51 0 217 170 64 0 chr1 21305184 21305231 -221359122 - L2 LINE L2 0 3272 3223 288 151 19 0 chr1 21305470 21305523 -221358830 - MIR3 SINE MIR -41 167 114 201 259 37 0 chr1 21306155 21306236 -221358117 - MIR SINE MIR -99 163 80 184 337 12 12 chr1 21306499 21306585 -221357768 - MIR SINE MIR -119 143 58 406 276 58 26 chr1 21307327 21307483 -221356870 + MIR SINE MIR 34 194 -68 224 275 0 25 chr1 21307897 21307977 -221356376 + GA-rich Low_complexity Low_complexity 3 80 0 205 222 44 0 chr1 21308774 21308819 -221355534 + L2 LINE L2 3218 3264 -8 414 257 94 13 chr1 21309321 21309498 -221354855 - MIR3 SINE MIR -3 205 11 585 283 106 4 chr1 21309750 21309976 -221354377 + MIR SINE MIR 14 262 0 323 282 59 72 chr1 21310098 21310275 -221354078 - L2 LINE L2 -186 3086 2908 1775 164 13 22 chr1 21310275 21310586 -221353767 - AluJo SINE Alu -4 308 1 323 282 59 72 chr1 21310586 21310824 -221353529 - L2 LINE L2 -364 2908 2678 2262 136 40 38 chr1 21311020 21311447 -221352906 + MSTA LTR MaLR 1 428 0 260 266 266 0 chr1 21311498 21311592 -221352761 + L2 LINE L2 3154 3272 0 2116 114 14 0 chr1 21311603 21311892 -221352461 + AluSq SINE Alu 1 293 -20 269 361 57 45 chr1 21313408 21313652 -221350701 + MIR SINE MIR 10 256 -6 258 328 22 50 chr1 21316299 21316479 -221347874 - MER5A DNA MER1_type 0 189 15 1752 177 3 14 chr1 21316816 21317098 -221347255 + AluJo SINE Alu 1 281 -31 2177 123 3 0 chr1 21317098 21317382 -221346971 - AluSx SINE Alu -27 285 1 1752 177 3 14 chr1 21317382 21317393 -221346960 + AluJo SINE Alu 281 291 -21 27 29 0 0 chr1 21317393 21317427 -221346926 + AT_rich Low_complexity Low_complexity 1 34 0 352 252 133 15 chr1 21317496 21317631 -221346722 - MIR SINE MIR -38 224 74 28 0 0 0 chr1 21317859 21317887 -221346466 + AT_rich Low_complexity Low_complexity 1 28 0 1930 166 7 0 chr1 21318423 21318718 -221345635 - AluJb SINE Alu -15 297 1 335 273 81 0 chr1 21318896 21318995 -221345358 - L2 LINE L2 -10 3262 3156 581 253 0 20 chr1 21319180 21319330 -221345023 + L2 LINE L2 3167 3313 0 664 189 69 6 chr1 21319331 21319506 -221344847 - MIR SINE MIR -3 259 74 368 301 87 20 chr1 21319563 21319762 -221344591 + MIR SINE MIR 40 249 -13 1794 175 7 0 chr1 21319851 21320160 -221344193 + AluJo SINE Alu 1 311 -1 283 215 0 32 chr1 21320164 21320257 -221344096 + GA-rich Low_complexity Low_complexity 3 92 0 302 160 0 0 chr1 21320627 21320677 -221343676 - AluSp/q SINE Alu -6 297 248 325 231 44 44 chr1 21320826 21320917 -221343436 - L2 LINE L2 -13 3259 3169 181 312 269 0 chr1 21320988 21321081 -221343272 + MIR SINE MIR 33 150 -58 2333 96 0 0 chr1 21321116 21321428 -221342925 + AluSx SINE Alu 1 312 0 1850 108 48 10 chr1 21321493 21321788 -221342565 + AluSx SINE Alu 1 306 -6 584 279 249 10 chr1 21321910 21322215 -221342138 + L2 LINE L2 2936 3313 0 293 283 94 25 chr1 21323025 21323184 -221341169 - MIR SINE MIR -44 218 49 430 292 146 41 chr1 21323279 21323498 -221340855 - MIR SINE MIR 0 262 21 1718 135 42 14 chr1 21323601 21323890 -221340463 - AluJo SINE Alu -15 297 1 463 288 43 33 chr1 21323905 21324055 -221340298 - L1MC/D LINE L1 -2129 5679 5525 2180 113 3 0 chr1 21324055 21324355 -221339998 - AluSx SINE Alu -11 301 1 463 288 43 33 chr1 21324355 21324388 -221339965 - L1MC/D LINE L1 -2283 5525 5494 232 236 14 0 chr1 21324740 21324812 -221339541 + L1MC/D LINE L1 5703 5775 -2033 1123 75 0 7 chr1 21325088 21325234 -221339119 + AluSq/x SINE Alu 1 145 -167 2182 89 6 25 chr1 21325234 21325549 -221338804 + AluSp SINE Alu 1 309 -4 233 317 123 45 chr1 21325556 21326081 -221338272 - L2 LINE L2 0 3272 2698 233 299 37 56 chr1 21326876 21326983 -221337370 - L2 LINE L2 -12 3301 3197 2122 106 0 20 chr1 21327088 21327390 -221336963 + AluSx SINE Alu 1 296 -16 1678 123 14 35 chr1 21327415 21327700 -221336653 + AluSq SINE Alu 1 279 -34 197 148 0 19 chr1 21327701 21327755 -221336598 + (GA)n Simple_repeat Simple_repeat 2 54 0 843 249 24 0 chr1 21327755 21327924 -221336429 + FRAM SINE Alu 2 174 -2 362 145 0 14 chr1 21327924 21327993 -221336360 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 2253 97 7 0 chr1 21328162 21328462 -221335891 + AluSc SINE Alu 1 302 -7 2175 106 0 3 chr1 21328846 21329148 -221335205 - AluSx SINE Alu -11 301 1 433 128 128 0 chr1 21329156 21329250 -221335103 - L1MA10 LINE L1 -1 6333 6228 1991 166 19 48 chr1 21329250 21329629 -221334724 - LOR1b LTR ERV1 0 461 94 2224 100 0 3 chr1 21329651 21329952 -221334401 - AluSg SINE Alu -10 300 1 2106 105 10 7 chr1 21329971 21330277 -221334076 - AluSx SINE Alu -5 307 1 10130 62 47 78 chr1 21330277 21330431 -221333922 + HUERS-P1 LTR ERV1 2210 2367 -3896 2181 101 7 0 chr1 21330431 21330739 -221333614 + AluSp SINE Alu 1 310 -3 10130 62 47 78 chr1 21330739 21331061 -221333292 + HUERS-P1 LTR ERV1 2367 2698 -3565 2081 91 25 7 chr1 21331061 21331346 -221333007 + AluSq SINE Alu 1 290 -23 10130 62 47 78 chr1 21331346 21331383 -221332970 + HUERS-P1 LTR ERV1 2698 2735 -3528 2381 87 0 0 chr1 21331383 21331695 -221332658 + AluSx SINE Alu 1 312 0 10130 62 47 78 chr1 21331695 21332477 -221331876 + HUERS-P1 LTR ERV1 2735 3540 -2723 1998 101 35 0 chr1 21332477 21332763 -221331590 + AluSx SINE Alu 5 300 -12 10130 62 47 78 chr1 21332763 21332957 -221331396 + HUERS-P1 LTR ERV1 3540 3739 -2524 2233 88 3 0 chr1 21332957 21333251 -221331102 + AluSq SINE Alu 1 295 -18 1977 112 35 0 chr1 21333257 21333543 -221330810 + AluSx SINE Alu 1 296 -16 10130 62 47 78 chr1 21333543 21333737 -221330616 + HUERS-P1 LTR ERV1 3744 3851 -2412 1130 58 7 0 chr1 21333738 21333876 -221330477 - AluSp SINE Alu -174 139 1 889 188 38 0 chr1 21333900 21334060 -221330293 + FRAM SINE Alu 1 166 0 214 303 50 30 chr1 21335071 21335170 -221329183 + MIR SINE MIR 8 108 -154 200 195 0 24 chr1 21335845 21335886 -221328467 + G-rich Low_complexity Low_complexity 4 43 0 233 115 0 19 chr1 21337163 21337215 -221327138 + (GGA)n Simple_repeat Simple_repeat 2 52 0 36 23 0 0 chr1 21337276 21337319 -221327034 + GC_rich Low_complexity Low_complexity 1 43 0 855 154 37 37 chr1 21339531 21339693 -221324660 + AluJo SINE Alu 126 287 -25 300 27 0 0 chr1 21339781 21339818 -221324535 + (CA)n Simple_repeat Simple_repeat 2 38 0 423 295 35 95 chr1 21340947 21341270 -221323083 + L2 LINE L2 2845 3135 -137 2171 97 10 0 chr1 21341270 21341569 -221322784 - AluSp SINE Alu -11 302 1 423 295 35 95 chr1 21341569 21341696 -221322657 + L2 LINE L2 3135 3268 -4 355 324 1 39 chr1 21342098 21342246 -221322107 + MIR3 SINE MIR 1 144 -64 2259 103 3 0 chr1 21342246 21342557 -221321796 + AluSq SINE Alu 1 312 -1 355 324 1 39 chr1 21342557 21342576 -221321777 + MIR3 SINE MIR 144 162 -46 2259 63 0 7 chr1 21342577 21342894 -221321459 - AluY SINE Alu 0 315 1 1311 179 0 105 chr1 21342902 21343079 -221321274 - AluY SINE Alu -21 290 161 369 0 0 0 chr1 21343079 21343120 -221321233 + (TG)n Simple_repeat Simple_repeat 1 41 0 1311 179 0 105 chr1 21343120 21343266 -221321087 - AluY SINE Alu -150 161 1 28 29 0 0 chr1 21343266 21343301 -221321052 + AT_rich Low_complexity Low_complexity 1 35 0 856 159 99 7 chr1 21343315 21343466 -221320887 - AluJb SINE Alu -19 293 129 212 325 104 0 chr1 21343822 21343899 -221320454 + L2 LINE L2 3188 3272 0 568 254 101 0 chr1 21344429 21344567 -221319786 + MLT1J2 LTR MaLR 25 176 -274 1147 160 80 9 chr1 21344578 21344790 -221319563 + AluJo SINE Alu 85 311 -1 552 225 122 10 chr1 21344817 21345020 -221319333 + MLT1J1 LTR MaLR 224 450 0 1363 262 73 67 chr1 21345021 21345488 -221318865 + MLT1K LTR MaLR 45 517 -71 2133 95 0 14 chr1 21345488 21345783 -221318570 + AluSg SINE Alu 1 291 -19 1363 262 73 67 chr1 21345783 21345849 -221318504 + MLT1K LTR MaLR 517 581 -7 301 270 54 103 chr1 21346359 21346563 -221317790 + MIR SINE MIR 36 229 -33 1835 115 0 0 chr1 21347412 21347665 -221316688 + AluSq SINE Alu 1 253 -60 256 125 0 21 chr1 21347765 21347813 -221316540 + (TCCCC)n Simple_repeat Simple_repeat 1 47 0 1456 196 43 7 chr1 21347813 21348094 -221316259 - AluJo SINE Alu -21 291 1 225 256 44 131 chr1 21348523 21348660 -221315693 + MLT1K LTR MaLR 69 193 -395 1970 155 7 0 chr1 21349157 21349467 -221314886 - AluSx SINE Alu 0 312 1 597 294 21 0 chr1 21349954 21350141 -221314212 + MIR SINE MIR 66 256 -6 2204 86 0 0 chr1 21350269 21350604 -221313749 - AluSg SINE Alu 0 335 1 972 267 122 31 chr1 21350606 21351075 -221313278 + L2 LINE L2 2779 3266 -47 1597 179 86 24 chr1 21351100 21351434 -221312919 + MLT1A2 LTR MaLR 4 358 -16 953 189 112 103 chr1 21351434 21351783 -221312570 - MSTD LTR MaLR 0 396 45 242 135 0 0 chr1 21351857 21351894 -221312459 - MSTD LTR MaLR -391 37 1 205 205 0 0 chr1 21352031 21352070 -221312283 + A-rich Low_complexity Low_complexity 1 39 0 369 323 31 0 chr1 21352304 21352431 -221311922 - MIR SINE MIR -14 248 118 2071 93 31 7 chr1 21352483 21352774 -221311579 - AluY SINE Alu -13 298 1 1899 163 0 3 chr1 21352879 21353186 -221311167 + AluJb SINE Alu 1 306 -6 183 180 20 80 chr1 21353305 21353355 -221310998 - MER5A DNA MER1_type 0 189 143 559 149 9 28 chr1 21353366 21353473 -221310880 - FLAM_A SINE Alu -4 138 34 622 196 27 34 chr1 21353473 21353621 -221310732 - MER5A DNA MER1_type -40 149 3 2315 81 0 13 chr1 21353780 21354078 -221310275 - AluSq SINE Alu -19 294 1 1436 118 9 22 chr1 21354078 21354306 -221310047 - AluJb SINE Alu -10 302 78 2277 103 0 3 chr1 21355123 21355435 -221308918 - AluSx SINE Alu -1 311 1 1755 176 7 3 chr1 21356066 21356372 -221307981 + AluJo SINE Alu 1 307 -5 1870 161 3 3 chr1 21356819 21357130 -221307223 - AluJo SINE Alu -1 311 1 257 323 20 10 chr1 21357241 21357340 -221307013 - L2 LINE L2 0 3272 3173 232 321 0 12 chr1 21357554 21357638 -221306715 - MIR SINE MIR -6 256 174 2160 88 27 0 chr1 21357805 21358101 -221306252 + AluSx SINE Alu 1 304 -8 245 327 59 10 chr1 21358115 21358216 -221306137 - MIR SINE MIR -128 134 29 493 252 0 0 chr1 21358381 21358484 -221305869 + L2 LINE L2 3205 3307 -6 2394 68 0 7 chr1 21358573 21358883 -221305470 - AluY SINE Alu -3 308 1 422 289 20 85 chr1 21359138 21359339 -221305014 - L2 LINE L2 0 3272 3085 238 310 45 39 chr1 21359584 21359739 -221304614 + MIR SINE MIR 21 176 -86 351 283 102 17 chr1 21360125 21360331 -221304022 + MIR3 SINE MIR 4 231 -31 1823 132 0 7 chr1 21361387 21361660 -221302693 + AluJo SINE Alu 35 305 -7 415 306 2 0 chr1 21361746 21361872 -221302481 + MIR SINE MIR 34 160 -75 613 321 0 16 chr1 21361894 21362087 -221302266 + MIR SINE MIR 20 209 -53 203 244 0 0 chr1 21362756 21362801 -221301552 + (CCCTG)n Simple_repeat Simple_repeat 1 45 0 1894 134 7 7 chr1 21362978 21363276 -221301077 - AluSx SINE Alu -14 298 1 2035 95 3 11 chr1 21363565 21363875 -221300478 - AluSx SINE Alu 0 308 1 259 264 0 110 chr1 21364269 21364360 -221299993 + L1ME3A LINE L1 6052 6132 -38 332 219 32 0 chr1 21364475 21364598 -221299755 + (CA)n Simple_repeat Simple_repeat 2 128 0 282 339 18 9 chr1 21364598 21364707 -221299646 + L2 LINE L2 3189 3298 -15 1055 155 80 5 chr1 21364708 21364908 -221299445 + AluJb SINE Alu 85 299 -13 229 314 0 0 chr1 21365368 21365438 -221298915 - MIR3 SINE MIR -54 154 85 2283 109 0 0 chr1 21365756 21366060 -221298293 + AluSx SINE Alu 1 304 -8 182 333 14 0 chr1 21366185 21366254 -221298099 + L2 LINE L2 2898 2967 -305 420 275 41 56 chr1 21366332 21366574 -221297779 - MIR SINE MIR -3 259 24 224 274 27 0 chr1 21366735 21366808 -221297545 - MIR SINE MIR -115 147 73 216 275 193 15 chr1 21367615 21367956 -221296397 + L2 LINE L2 2637 3066 -247 209 267 0 0 chr1 21368308 21368353 -221296000 - MIR SINE MIR -110 152 108 244 118 294 15 chr1 21368773 21368841 -221295512 - MIR SINE MIR -62 146 60 287 65 22 0 chr1 21368856 21368902 -221295451 + (CA)n Simple_repeat Simple_repeat 2 48 0 2302 100 0 17 chr1 21368944 21369244 -221295109 - AluSx SINE Alu -17 295 1 2516 73 0 10 chr1 21370418 21370732 -221293621 - AluY SINE Alu 0 311 1 195 37 0 0 chr1 21370855 21370882 -221293471 + L2 LINE L2 3028 3054 -218 211 325 102 30 chr1 21371427 21371593 -221292760 + MIR SINE MIR 70 247 -15 2144 141 0 25 chr1 21371752 21372072 -221292281 + AluSx SINE Alu 1 312 0 982 200 11 0 chr1 21372276 21372461 -221291892 + MIR SINE MIR 2 188 -74 1115 133 13 0 chr1 21372901 21373059 -221291294 - FRAM SINE Alu -8 168 9 2579 51 0 3 chr1 21373074 21373369 -221290984 - AluY SINE Alu -17 294 1 2025 161 0 3 chr1 21373474 21373779 -221290574 + AluJb SINE Alu 1 304 -8 518 149 9 28 chr1 21373961 21374068 -221290285 - FLAM_A SINE Alu -4 138 34 616 196 27 34 chr1 21374068 21374216 -221290137 - MER5A DNA MER1_type -40 149 3 2460 81 0 13 chr1 21374374 21374672 -221289681 - AluSq SINE Alu -19 294 1 1526 118 9 22 chr1 21374672 21374900 -221289453 - AluJb SINE Alu -10 302 78 2412 103 0 3 chr1 21375717 21376029 -221288324 - AluSx SINE Alu -1 311 1 1874 176 7 3 chr1 21376660 21376966 -221287387 + AluJo SINE Alu 1 307 -5 1988 161 3 3 chr1 21377413 21377724 -221286629 - AluJo SINE Alu -1 311 1 245 323 20 10 chr1 21377835 21377934 -221286419 - L2 LINE L2 0 3272 3173 229 321 0 12 chr1 21378148 21378232 -221286121 - MIR SINE MIR -6 256 174 2298 88 27 0 chr1 21378399 21378695 -221285658 + AluSx SINE Alu 1 304 -8 237 327 59 10 chr1 21378709 21378810 -221285543 - MIR SINE MIR -128 134 29 487 252 0 0 chr1 21378975 21379078 -221285275 + L2 LINE L2 3205 3307 -6 2540 68 0 7 chr1 21379167 21379477 -221284876 - AluY SINE Alu -3 308 1 407 289 20 85 chr1 21379732 21379933 -221284420 - L2 LINE L2 0 3272 3085 217 310 45 39 chr1 21380178 21380333 -221284020 + MIR SINE MIR 21 176 -86 335 265 98 23 chr1 21380719 21380851 -221283502 + MIR3 SINE MIR 4 145 -63 1935 132 0 7 chr1 21381981 21382254 -221282099 + AluJo SINE Alu 35 305 -7 408 306 2 0 chr1 21382340 21382466 -221281887 + MIR SINE MIR 34 160 -75 609 321 0 16 chr1 21382488 21382681 -221281672 + MIR SINE MIR 20 209 -53 203 244 0 0 chr1 21383351 21383396 -221280957 + (CCCTG)n Simple_repeat Simple_repeat 1 45 0 1966 126 10 10 chr1 21383577 21383871 -221280482 - AluSx SINE Alu -18 294 1 1803 181 23 16 chr1 21384026 21384336 -221280017 + AluJo SINE Alu 1 312 0 487 283 40 0 chr1 21384580 21384732 -221279621 - MIR SINE MIR 0 262 105 1759 158 14 11 chr1 21384753 21385032 -221279321 + AluJo SINE Alu 1 280 -32 369 0 0 0 chr1 21385032 21385073 -221279280 + (TAA)n Simple_repeat Simple_repeat 1 41 0 277 276 112 33 chr1 21385144 21385296 -221279057 + MIR SINE MIR 2 165 -97 740 276 79 21 chr1 21385413 21385743 -221278610 + MLT1K LTR MaLR 210 558 -30 412 284 0 0 chr1 21385769 21385864 -221278489 + MIR SINE MIR 160 254 -8 362 289 61 0 chr1 21385883 21385997 -221278356 - L2 LINE L2 -36 3236 3116 2286 98 0 28 chr1 21386121 21386439 -221277914 - AluSg SINE Alu -1 309 1 330 220 42 25 chr1 21386698 21386709 -221277644 + L1M LINE L1 5256 5265 -2777 2611 42 0 16 chr1 21386709 21387017 -221277336 - AluY SINE Alu -7 304 2 330 220 42 25 chr1 21387017 21387123 -221277230 + L1M LINE L1 5265 5375 -2667 1988 154 0 10 chr1 21387249 21387560 -221276793 + AluJb SINE Alu 1 308 -4 588 330 74 24 chr1 21387593 21388009 -221276344 + L1ME LINE L1 5255 5698 -464 1967 155 0 16 chr1 21388022 21388339 -221276014 - AluSx SINE Alu 0 312 1 761 273 15 25 chr1 21388342 21388735 -221275618 - L1M4 LINE L1 -1107 5039 4609 845 146 16 0 chr1 21388862 21388985 -221275368 + FLAM_C SINE Alu 1 125 -18 322 254 36 42 chr1 21389023 21389188 -221275165 - L1M4 LINE L1 -2658 3488 3325 * 470 299 27 58 chr1 21389176 21389344 -221275009 - L1M4 LINE L1 -3381 2765 2593 2490 60 0 3 chr1 21389344 21389645 -221274708 + AluY SINE Alu 1 300 -11 470 299 27 58 chr1 21389645 21389921 -221274432 - L1M4 LINE L1 -3553 2593 2335 417 214 118 56 chr1 21389942 21390007 -221274346 - Charlie4 DNA MER1_type -1 1960 1900 2180 138 0 13 chr1 21390007 21390319 -221274034 - AluSx SINE Alu -4 308 1 2276 93 0 0 chr1 21390328 21390632 -221273721 - AluSg SINE Alu 0 304 1 417 214 118 56 chr1 21390632 21390732 -221273621 - Charlie4 DNA MER1_type -68 1893 1772 2119 144 0 0 chr1 21390732 21391031 -221273322 - AluSx SINE Alu -13 299 1 277 361 68 5 chr1 21391769 21391960 -221272393 + LTR67 LTR ERVL 352 554 -3 1951 154 7 0 chr1 21392351 21392662 -221271691 + AluJb SINE Alu 1 313 0 2306 66 45 0 chr1 21392675 21392962 -221271391 + AluY SINE Alu 1 300 -11 1053 243 37 90 chr1 21393106 21393225 -221271128 - L2 LINE L2 0 3313 3189 2362 112 3 0 chr1 21393225 21393530 -221270823 - AluSx SINE Alu -6 306 1 1053 243 37 90 chr1 21393530 21393842 -221270511 - L2 LINE L2 -124 3189 2905 1873 94 134 7 chr1 21393922 21394197 -221270156 + AluY SINE Alu 1 310 -1 1340 112 0 0 chr1 21394350 21394519 -221269834 - AluSx SINE Alu -143 169 1 182 293 26 43 chr1 21395243 21395359 -221268994 - L3 LINE CR1 -341 1236 1123 * 439 228 148 0 chr1 21395356 21395505 -221268848 + L2 LINE L2 2909 3079 -193 239 316 53 0 chr1 21395632 21395727 -221268626 - L2 LINE L2 -250 3022 2923 185 207 17 69 chr1 21395864 21395922 -221268431 - L2 LINE L2 -233 3080 3026 292 87 0 0 chr1 21396088 21396194 -221268159 - Alu SINE Alu 0 360 255 587 146 23 11 chr1 21396306 21396483 -221267870 + CT-rich Low_complexity Low_complexity 1 179 0 617 192 24 0 chr1 21396487 21396612 -221267741 - FRAM SINE Alu -11 165 38 1074 283 76 43 chr1 21396620 21397132 -221267221 + L2 LINE L2 2005 2533 -781 277 114 0 0 chr1 21397142 21397186 -221267167 + L1P5 LINE L1 5748 5791 -360 309 258 34 45 chr1 21397187 21397276 -221267077 + L1MC4 LINE L1 6614 6701 -1341 2562 52 43 22 chr1 21397276 21397645 -221266708 + L1PB1 LINE L1 5774 6150 -1 392 339 203 10 chr1 21397656 21398295 -221266058 + L2 LINE L2 2531 3296 -17 234 340 20 0 chr1 21398668 21398768 -221265585 - MIR SINE MIR 0 262 161 888 235 161 37 chr1 21398771 21399175 -221265178 - MLT1H LTR MaLR 0 549 96 2528 80 0 0 chr1 21399233 21399544 -221264809 - AluY SINE Alu 0 311 1 345 243 39 0 chr1 21399545 21399648 -221264705 - MIR SINE MIR -97 165 59 247 208 0 0 chr1 21399822 21399870 -221264483 + MIR SINE MIR 97 144 -118 2202 125 0 10 chr1 21399923 21400227 -221264126 + AluSx SINE Alu 1 301 -11 573 229 19 32 chr1 21400243 21400400 -221263953 + L2 LINE L2 3159 3313 0 1031 181 108 77 chr1 21400593 21400918 -221263435 - MLT1J2 LTR MaLR -113 337 3 481 278 21 98 chr1 21400994 21401228 -221263125 + L2 LINE L2 3094 3309 -4 2513 132 45 22 chr1 21401228 21401692 -221262661 - L1M1 LINE L1 -561 5739 5265 1720 117 0 0 chr1 21401692 21401922 -221262431 + AluSx SINE Alu 64 293 -19 2642 160 13 23 chr1 21401923 21402096 -221262257 + L1MA4 LINE L1 5777 5950 -350 2448 108 0 0 chr1 21402096 21402402 -221261951 + AluSx SINE Alu 1 306 -6 2642 160 13 23 chr1 21402402 21402754 -221261599 + L1MA4 LINE L1 5950 6297 -3 2114 123 7 7 chr1 21403078 21403387 -221260966 + AluSx SINE Alu 1 309 -3 1972 178 0 10 chr1 21403507 21403821 -221260532 - AluJb SINE Alu -1 311 1 253 295 51 0 chr1 21403825 21403903 -221260450 - MIR SINE MIR -61 147 66 2462 88 3 0 chr1 21404248 21404555 -221259798 + AluSg SINE Alu 1 308 -2 695 270 100 46 chr1 21404759 21405148 -221259205 - L2 LINE L2 -6 3307 2898 814 163 0 0 chr1 21405294 21405417 -221258936 + FRAM SINE Alu 40 162 -14 370 288 174 0 chr1 21405483 21405615 -221258738 + MIR3 SINE MIR 36 190 -18 2475 93 0 6 chr1 21405814 21406127 -221258226 + AluSx SINE Alu 1 311 -1 1557 114 9 22 chr1 21406943 21407171 -221257182 + AluJb SINE Alu 78 302 -10 2460 81 0 13 chr1 21407171 21407469 -221256884 + AluSq SINE Alu 1 294 -19 616 196 27 34 chr1 21407628 21407776 -221256577 + MER5A DNA MER1_type 3 149 -40 518 149 9 28 chr1 21407776 21407883 -221256470 + FLAM_A SINE Alu 34 138 -4 2025 161 0 3 chr1 21408065 21408370 -221255983 - AluJb SINE Alu -8 304 1 2202 90 31 7 chr1 21408475 21408764 -221255589 + AluY SINE Alu 1 296 -15 360 323 31 0 chr1 21408818 21408945 -221255408 + MIR SINE MIR 118 248 -14 240 135 0 0 chr1 21409354 21409391 -221254962 + MSTD LTR MaLR 1 37 -391 935 189 112 103 chr1 21409465 21409814 -221254539 + MSTD LTR MaLR 45 396 0 * 1568 179 90 24 chr1 21409814 21410147 -221254206 - MLT1A2 LTR MaLR -16 358 4 951 262 124 32 chr1 21410172 21410640 -221253713 - L2 LINE L2 -47 3266 2779 2221 92 7 0 chr1 21410642 21411005 -221253348 + AluSg SINE Alu 1 365 0 576 294 21 0 chr1 21411133 21411320 -221253033 - MIR SINE MIR -6 256 66 2093 155 7 0 chr1 21411807 21412117 -221252236 + AluSx SINE Alu 1 312 0 1594 192 43 7 chr1 21413179 21413460 -221250893 + AluJo SINE Alu 1 291 -21 387 105 0 0 chr1 21413460 21413517 -221250836 + (GGGGA)n Simple_repeat Simple_repeat 1 57 0 299 261 22 92 chr1 21413542 21413726 -221250627 - MLT1J LTR MaLR -50 461 291 2240 120 7 0 chr1 21413751 21414052 -221250301 - AluSg SINE Alu -7 303 1 883 312 66 27 chr1 21414563 21415047 -221249306 - MLT1J LTR MaLR -8 503 1 202 217 0 17 chr1 21415371 21415431 -221248922 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1700 152 62 42 chr1 21415524 21415880 -221248473 - MLT1A1 LTR MaLR 0 365 3 340 256 32 96 chr1 21416449 21416574 -221247779 - L2 LINE L2 0 3313 3197 2546 61 0 3 chr1 21416710 21417006 -221247347 + AluY SINE Alu 1 295 -16 1091 139 13 0 chr1 21417020 21417178 -221247175 + FRAM SINE Alu 9 168 -8 1169 88 0 0 chr1 21417532 21417679 -221246674 + AluYa5 SINE Alu 147 293 -18 408 232 77 88 chr1 21417681 21417862 -221246491 - MIR3 SINE MIR -29 179 1 221 273 133 49 chr1 21419509 21419652 -221244701 + MIR3 SINE MIR 2 156 -52 306 0 0 0 chr1 21419726 21419760 -221244593 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2012 134 0 0 chr1 21419767 21420042 -221244311 - AluSx SINE Alu -37 275 1 620 244 49 49 chr1 21420108 21420333 -221244020 + MIR SINE MIR 37 262 0 2560 48 0 7 chr1 21420535 21420829 -221243524 + AluY SINE Alu 1 292 -19 190 290 16 16 chr1 21420858 21420920 -221243433 - L2 LINE L2 -493 2821 2760 201 297 161 25 chr1 21420969 21421087 -221243266 + L2 LINE L2 3179 3312 -1 210 118 0 0 chr1 21421375 21421409 -221242944 + (TTGG)n Simple_repeat Simple_repeat 1 34 0 498 203 85 8 chr1 21421415 21421533 -221242820 + L2 LINE L2 3182 3308 -5 236 268 56 0 chr1 21421521 21421592 -221242761 + MIR SINE MIR 172 246 -16 * 183 42 0 0 chr1 21421597 21421621 -221242732 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2304 102 3 0 chr1 21421623 21421917 -221242436 - AluSg SINE Alu -1 309 15 309 284 59 18 chr1 21422116 21422271 -221242082 - MIR SINE MIR -54 208 50 1844 192 0 0 chr1 21422291 21422593 -221241760 + AluJo SINE Alu 2 303 -9 2227 101 0 0 chr1 21422709 21423011 -221241342 - AluSc SINE Alu 0 302 1 194 125 0 0 chr1 21423159 21423191 -221241162 + L2 LINE L2 2916 2947 -325 2108 138 3 3 chr1 21423191 21423495 -221240858 - AluSx SINE Alu -8 304 1 1540 174 91 46 chr1 21423621 21424012 -221240341 + LTR7 LTR ERV1 1 414 -36 2261 71 60 0 chr1 21424012 21424295 -221240058 + AluSg SINE Alu 1 300 -10 1540 174 91 46 chr1 21424295 21424334 -221240019 + LTR7 LTR ERV1 414 450 0 344 278 0 11 chr1 21424337 21424427 -221239926 + MIR SINE MIR 170 258 -4 181 303 11 22 chr1 21424428 21424517 -221239836 + L2 LINE L2 2992 3079 -193 2276 104 0 3 chr1 21424539 21424837 -221239516 - AluSq SINE Alu -16 297 1 605 289 85 82 chr1 21425409 21425676 -221238677 - L2 LINE L2 0 3313 3048 1118 199 9 5 chr1 21425676 21425897 -221238456 + MER58A DNA MER1_type 3 224 0 605 289 85 82 chr1 21425897 21426196 -221238157 - L2 LINE L2 -265 3048 2739 2420 72 0 3 chr1 21426200 21426493 -221237860 - AluSg SINE Alu -18 292 1 344 148 0 0 chr1 21426493 21426554 -221237799 + L1MB3 LINE L1 6113 6173 -10 843 106 8 8 chr1 21426686 21426818 -221237535 + FLAM_C SINE Alu 2 133 0 1823 171 3 0 chr1 21427056 21427342 -221237011 + AluJb SINE Alu 5 291 -21 338 284 53 38 chr1 21427346 21427546 -221236807 - MIR SINE MIR -58 204 3 182 242 45 61 chr1 21428484 21428550 -221235803 - MIR SINE MIR -65 143 79 397 188 0 12 chr1 21428608 21428688 -221235665 + MIR SINE MIR 102 180 -82 2604 84 0 40 chr1 21428712 21429016 -221235337 + THE1B LTR MaLR 1 290 -74 2061 109 0 7 chr1 21429016 21429330 -221235023 - AluSx SINE Alu 0 312 1 2604 84 0 40 chr1 21429330 21429403 -221234950 + THE1B LTR MaLR 290 364 0 448 241 197 31 chr1 21429561 21429775 -221234578 - MIR SINE MIR -24 238 3 269 327 147 5 chr1 21430571 21430759 -221233594 - MIR SINE MIR -27 235 24 552 315 25 15 chr1 21430769 21430966 -221233387 - MIR SINE MIR -24 238 40 2337 97 0 3 chr1 21430966 21431266 -221233087 + AluSx SINE Alu 1 299 -13 2104 121 0 0 chr1 21431898 21432206 -221232147 - AluSg SINE Alu 0 308 1 1187 194 6 118 chr1 21432232 21432562 -221231791 + AluJo SINE Alu 1 293 -9 2182 119 0 26 chr1 21432564 21432876 -221231477 + AluSq SINE Alu 1 304 -9 2336 110 0 0 chr1 21432992 21433293 -221231060 - AluSx SINE Alu -11 301 1 2582 74 0 0 chr1 21433311 21433620 -221230733 - AluY SINE Alu -2 309 1 254 290 226 7 chr1 21433620 21433775 -221230578 - L2 LINE L2 -6 3307 3119 1944 156 0 46 chr1 21433809 21433946 -221230407 + AluJb SINE Alu 1 143 -169 2248 97 4 0 chr1 21433946 21434246 -221230107 + AluSg SINE Alu 1 301 0 1944 156 0 46 chr1 21434246 21434433 -221229920 + AluJb SINE Alu 143 312 0 2629 61 3 0 chr1 21434809 21435119 -221229234 - AluSp SINE Alu -2 311 1 2232 129 0 7 chr1 21435240 21435550 -221228803 + AluSx SINE Alu 1 308 -4 1469 244 106 8 chr1 21435590 21436076 -221228277 - MLT1F1 LTR MaLR -3 564 33 855 195 17 29 chr1 21436280 21436294 -221228059 + AluJo SINE Alu 119 132 -180 738 173 0 23 chr1 21436294 21436427 -221227926 + FLAM_C SINE Alu 1 130 -3 855 195 17 29 chr1 21436427 21436444 -221227909 + AluJo SINE Alu 132 148 -164 3828 139 48 29 chr1 21436444 21437158 -221227195 - LTR8A LTR ERV1 0 727 1 855 195 17 29 chr1 21437158 21437299 -221227054 + AluJo SINE Alu 148 290 -22 1440 44 0 0 chr1 21437299 21437307 -221227046 + (GGAA)n Simple_repeat Simple_repeat 1 188 0 1440 44 0 0 chr1 21437307 21437487 -221226866 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 553 136 8 8 chr1 21437721 21437839 -221226514 + GA-rich Low_complexity Low_complexity 3 120 0 299 286 11 60 chr1 21437842 21438024 -221226329 + HAL1 LINE L1 2333 2505 -2 713 135 8 38 chr1 21438051 21438184 -221226169 + FLAM_C SINE Alu 15 143 0 346 217 35 25 chr1 21438489 21438636 -221225717 - L2 LINE L2 -43 3229 3026 3601 98 3 64 chr1 21439509 21440120 -221224233 + MER4B LTR ERV1 1 574 -36 275 106 0 0 chr1 21440374 21440421 -221223932 + L1MA3 LINE L1 6254 6300 -5 2439 101 0 0 chr1 21440442 21440748 -221223605 + AluSp SINE Alu 1 306 -7 2474 82 8 8 chr1 21440774 21441129 -221223224 - THE1A LTR MaLR 0 355 1 1507 188 44 4 chr1 21441177 21441477 -221222876 + AluJo SINE Alu 1 311 0 2862 199 82 66 chr1 21442155 21443036 -221221317 - MER4D LTR ERV1 -8 895 1 1534 141 38 62 chr1 21443066 21443356 -221220997 - AluJo SINE Alu -21 291 9 23 0 0 0 chr1 21443507 21443530 -221220823 + AT_rich Low_complexity Low_complexity 1 23 0 1339 165 84 60 chr1 21443694 21443745 -221220608 + LTR47A LTR ERVL 2 50 -402 2081 138 16 3 chr1 21443745 21444049 -221220304 - AluSx SINE Alu -4 308 1 1339 165 84 60 chr1 21444049 21444331 -221220022 + LTR47A LTR ERVL 50 343 -109 217 307 53 13 chr1 21444514 21444589 -221219764 + MIR SINE MIR 66 143 -65 231 335 104 9 chr1 21444686 21444865 -221219488 + MIR SINE MIR 38 235 -27 22 0 0 0 chr1 21445032 21445054 -221219299 + GC_rich Low_complexity Low_complexity 1 22 0 228 172 0 35 chr1 21445102 21445160 -221219193 + (CGG)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr1 21445257 21445282 -221219071 + GC_rich Low_complexity Low_complexity 1 25 0 288 242 168 54 chr1 21445854 21446003 -221218350 - MIR SINE MIR -82 180 15 761 231 60 28 chr1 21446180 21446396 -221217957 - MLT2D LTR ERVL 0 414 192 392 262 78 14 chr1 21446423 21446564 -221217789 - MIR3 SINE MIR -51 157 8 2291 86 0 0 chr1 21446837 21447116 -221217237 + AluSg SINE Alu 1 279 -31 2603 64 0 3 chr1 21447183 21447495 -221216858 + AluY SINE Alu 1 311 0 1596 204 0 0 chr1 21447501 21447765 -221216588 + AluJo SINE Alu 1 264 -48 236 132 61 26 chr1 21447800 21447914 -221216439 + (TA)n Simple_repeat Simple_repeat 1 118 0 2244 98 10 7 chr1 21447961 21448258 -221216095 - AluSg SINE Alu -12 298 1 1806 155 32 36 chr1 21449975 21450284 -221214069 + AluJb SINE Alu 1 308 -4 488 245 0 0 chr1 21450293 21450399 -221213954 - MER5A DNA MER1_type -80 109 4 225 309 154 18 chr1 21451619 21451729 -221212624 + L2 LINE L2 3137 3261 -11 217 301 61 49 chr1 21452102 21452265 -221212088 - L2 LINE L2 -174 3098 2934 1912 118 7 15 chr1 21452384 21452656 -221211697 + AluJb SINE Alu 13 282 -30 189 278 61 26 chr1 21453314 21453429 -221210924 + L2 LINE L2 2799 2917 -397 347 232 107 47 chr1 21453827 21454036 -221210317 - LTR45 LTR ERV1 0 525 264 2049 125 3 3 chr1 21454284 21454572 -221209781 - AluJb SINE Alu -13 299 12 392 277 45 0 chr1 21455038 21455150 -221209203 - L2 LINE L2 0 3272 3156 431 274 44 30 chr1 21455167 21455302 -221209051 + L2 LINE L2 3134 3270 -2 1673 109 68 48 chr1 21455446 21455757 -221208596 - MER44D DNA MER2_type -22 587 1 238 200 0 0 chr1 21455777 21455822 -221208531 - MIR SINE MIR -188 74 30 281 183 0 14 chr1 21455847 21455918 -221208435 + (TGGA)n Simple_repeat Simple_repeat 2 71 0 227 313 15 0 chr1 21455940 21456007 -221208346 + L2 LINE L2 3246 3313 0 2329 104 3 0 chr1 21456823 21457121 -221207232 + AluSx SINE Alu 1 299 -13 1758 150 6 72 chr1 21457608 21457942 -221206411 + AluJo SINE Alu 1 312 0 529 251 27 114 chr1 21457942 21457980 -221206373 + L3 LINE CR1 1346 1386 -191 2399 84 0 0 chr1 21457980 21458267 -221206086 + AluSc SINE Alu 1 287 -22 529 251 27 114 chr1 21458267 21458447 -221205906 + L3 LINE CR1 1386 1545 -32 1957 127 25 0 chr1 21458472 21458663 -221205690 - AluSx SINE Alu 0 324 121 2335 74 0 3 chr1 21458663 21458948 -221205405 - AluY SINE Alu -2 309 26 1957 127 25 0 chr1 21458948 21459073 -221205280 - AluSx SINE Alu -203 121 1 2514 83 0 0 chr1 21459083 21459385 -221204968 - AluSg SINE Alu -8 302 1 1820 115 63 17 chr1 21459437 21459724 -221204629 - AluSx SINE Alu -11 301 2 2212 138 0 0 chr1 21461099 21461403 -221202950 + AluSx SINE Alu 1 304 -8 2321 88 0 3 chr1 21463432 21463743 -221200610 - AluY SINE Alu 0 310 1 2222 126 3 0 chr1 21466478 21466779 -221197574 - AluSx SINE Alu -10 302 1 722 153 23 8 chr1 21466795 21466926 -221197427 - FLAM_C SINE Alu 0 133 1 716 297 169 5 chr1 21468616 21469242 -221195111 - L2 LINE L2 -188 3125 2395 886 198 94 15 chr1 21469499 21469701 -221194652 + MER20 DNA MER1_type 1 218 -1 1669 200 87 78 chr1 21470073 21470460 -221193893 - MER113 DNA MER1_type? 0 521 126 1965 147 3 10 chr1 21470460 21470774 -221193579 - AluJo SINE Alu 0 312 1 1669 200 87 78 chr1 21470774 21470902 -221193451 - MER113 DNA MER1_type? -395 126 1 922 128 7 0 chr1 21471405 21471546 -221192807 + AluJb SINE Alu 163 304 -8 419 318 110 69 chr1 21471630 21472092 -221192261 + L3 LINE CR1 1097 1577 0 2038 98 20 14 chr1 21474561 21474858 -221189495 + AluSx SINE Alu 1 299 -13 450 226 89 16 chr1 21475062 21475186 -221189167 - MIR SINE MIR -44 218 86 480 250 64 21 chr1 21476610 21476750 -221187603 + MIR SINE MIR 5 150 -112 1127 162 0 0 chr1 21476828 21477007 -221187346 - AluSg/x SINE Alu 0 312 134 2231 114 0 3 chr1 21477007 21477315 -221187038 - AluSx SINE Alu -5 307 1 297 197 15 0 chr1 21477664 21477738 -221186615 - MIR SINE MIR -59 149 97 426 292 0 15 chr1 21478519 21478649 -221185704 + MLT1K LTR MaLR 122 249 -339 3508 107 4 13 chr1 21478683 21479217 -221185136 + MER1A DNA MER1_type 1 529 0 357 227 133 94 chr1 21479258 21479340 -221185013 + MLT1K LTR MaLR 338 415 -173 2261 93 0 7 chr1 21479340 21479640 -221184713 + AluSp SINE Alu 1 298 -15 2452 64 0 0 chr1 21479643 21479939 -221184414 + AluY SINE Alu 1 296 -15 357 227 133 94 chr1 21479939 21480055 -221184298 + MLT1K LTR MaLR 416 548 -40 1182 213 43 0 chr1 21480317 21480528 -221183825 + MER58A DNA MER1_type 4 223 -1 2271 67 3 0 chr1 21480870 21481203 -221183150 + AluY SINE Alu 1 334 0 2323 82 20 0 chr1 21481209 21481512 -221182841 + AluSc SINE Alu 1 309 0 361 279 116 8 chr1 21482577 21482706 -221181647 - MIR3 SINE MIR -21 187 45 256 205 189 47 chr1 21482716 21482843 -221181510 + MIR SINE MIR 43 187 -75 586 221 124 65 chr1 21482864 21482935 -221181418 - MIR SINE MIR -1 261 196 1973 142 0 28 chr1 21482935 21483253 -221181100 - AluJb SINE Alu -3 309 1 586 221 124 65 chr1 21483253 21483398 -221180955 - MIR SINE MIR -66 196 32 252 77 0 0 chr1 21483953 21483992 -221180361 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 1866 113 46 7 chr1 21484561 21484874 -221179479 + AluSx SINE Alu 1 312 0 243 0 0 0 chr1 21484996 21485023 -221179330 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 685 186 8 8 chr1 21485027 21485145 -221179208 - FLAM_C SINE Alu -25 118 1 2006 115 17 3 chr1 21485152 21485447 -221178906 - AluSx SINE Alu -13 299 1 1801 180 0 0 chr1 21485541 21485846 -221178507 - AluJo SINE Alu -6 306 2 1499 151 11 22 chr1 21485907 21486178 -221178175 - AluJb SINE Alu -39 273 6 2976 191 12 40 chr1 21486179 21486486 -221177867 - L1M4 LINE L1 -1002 5144 4830 2292 94 0 3 chr1 21486486 21486783 -221177570 + AluSx SINE Alu 1 296 -16 2353 74 0 3 chr1 21486784 21487082 -221177271 + AluY SINE Alu 1 297 -14 2976 191 12 40 chr1 21487082 21487506 -221176847 - L1M4 LINE L1 -1315 4831 4431 1088 127 73 0 chr1 21487510 21487675 -221176678 + AluSg/x SINE Alu 133 309 -1 1675 250 56 67 chr1 21487767 21488168 -221176185 + L1MC4a LINE L1 4997 5401 -745 2152 115 3 3 chr1 21488168 21488492 -221175861 + AluSx SINE Alu 2 312 0 1675 250 56 67 chr1 21488492 21488547 -221175806 + L1MC4a LINE L1 5401 5455 -691 2135 134 0 0 chr1 21488547 21488846 -221175507 + AluJb SINE Alu 1 299 -13 1675 250 56 67 chr1 21488846 21489190 -221175163 + L1MC4a LINE L1 5455 5111 -1035 2167 107 0 7 chr1 21489190 21489489 -221174864 + AluSx SINE Alu 1 297 -15 1675 250 56 67 chr1 21489489 21489599 -221174754 + L1MC4a LINE L1 5110 5220 -926 2266 132 30 28 chr1 21489626 21489989 -221174364 - THE1B LTR MaLR 0 364 1 30 0 0 0 chr1 21490025 21490055 -221174298 + AT_rich Low_complexity Low_complexity 1 30 0 1328 147 34 0 chr1 21490648 21490852 -221173501 + AluJb SINE Alu 1 211 -101 1658 104 0 36 chr1 21490876 21491125 -221173228 + AluJo SINE Alu 70 309 -3 1519 243 22 19 chr1 21491180 21491596 -221172757 + MLT1E2 LTR MaLR 207 623 -3 824 215 0 0 chr1 21491618 21491767 -221172586 - AluSg/x SINE Alu -27 285 137 326 343 73 76 chr1 21491928 21492049 -221172304 + L1MEc LINE L1 800 920 -5476 983 193 25 0 chr1 21492049 21492210 -221172143 + FRAM SINE Alu 1 165 -1 326 343 73 76 chr1 21492210 21492460 -221171893 + L1MEc LINE L1 920 1172 -5224 2381 73 0 19 chr1 21492460 21492775 -221171578 + AluY SINE Alu 1 309 -2 326 343 73 76 chr1 21492775 21492798 -221171555 + L1MEc LINE L1 1172 1194 -5202 2063 95 3 11 chr1 21492800 21493110 -221171243 - AluSx SINE Alu 0 308 1 237 264 0 110 chr1 21493504 21493595 -221170758 + L1ME3A LINE L1 6052 6132 -38 332 219 32 0 chr1 21493710 21493833 -221170520 + (CA)n Simple_repeat Simple_repeat 2 128 0 304 339 18 9 chr1 21493833 21493942 -221170411 + L2 LINE L2 3189 3298 -15 1076 155 80 5 chr1 21493943 21494143 -221170210 + AluJb SINE Alu 85 299 -13 247 314 0 0 chr1 21494603 21494673 -221169680 - MIR3 SINE MIR -54 154 85 2308 109 0 0 chr1 21494991 21495295 -221169058 + AluSx SINE Alu 1 304 -8 472 275 41 56 chr1 21495567 21495809 -221168544 - MIR SINE MIR -3 259 24 235 272 136 0 chr1 21495970 21496073 -221168280 - MIR SINE MIR -115 147 31 254 283 244 10 chr1 21496850 21497191 -221167162 + L2 LINE L2 2637 3066 -247 216 267 0 0 chr1 21497543 21497588 -221166765 - MIR SINE MIR -110 152 108 245 118 294 15 chr1 21498008 21498076 -221166277 - MIR SINE MIR -62 146 60 287 65 22 0 chr1 21498091 21498137 -221166216 + (CA)n Simple_repeat Simple_repeat 2 48 0 2199 100 0 17 chr1 21498179 21498479 -221165874 - AluSx SINE Alu -17 295 1 2405 70 0 10 chr1 21499653 21499967 -221164386 - AluY SINE Alu 0 311 1 197 37 0 0 chr1 21500090 21500117 -221164236 + L2 LINE L2 3028 3054 -218 287 325 102 30 chr1 21500662 21500828 -221163525 + MIR SINE MIR 70 247 -15 2051 140 0 28 chr1 21500987 21501308 -221163045 + AluSx SINE Alu 1 312 0 1001 205 11 0 chr1 21501512 21501697 -221162656 + MIR SINE MIR 2 188 -74 370 354 127 13 chr1 21502020 21502137 -221162216 - L1ME4a LINE L1 -28 6093 5991 1685 145 3 85 chr1 21502137 21502309 -221162044 - AluJo SINE Alu -8 304 120 2449 54 0 3 chr1 21502309 21502605 -221161748 - AluY SINE Alu -16 295 1 1685 145 3 85 chr1 21502605 21502637 -221161716 - AluJo SINE Alu -192 120 87 2002 122 30 0 chr1 21502637 21502940 -221161413 + AluSx SINE Alu 1 312 0 1685 145 3 85 chr1 21502940 21503065 -221161288 - AluJo SINE Alu -225 87 1 2091 99 0 48 chr1 21503074 21503387 -221160966 - AluSq SINE Alu -15 298 1 370 354 127 13 chr1 21503387 21503496 -221160857 - L1ME4a LINE L1 -137 5984 5830 314 333 45 40 chr1 21503852 21503960 -221160393 + L2 LINE L2 3001 3112 -201 1283 155 182 35 chr1 21503960 21504218 -221160135 - AluSg SINE Alu -3 297 2 314 333 45 40 chr1 21504218 21504310 -221160043 + L2 LINE L2 3112 3202 -111 2280 103 0 0 chr1 21504389 21504690 -221159663 - AluSg SINE Alu -9 301 1 1733 137 3 68 chr1 21504863 21505184 -221159169 - AluJo SINE Alu -12 300 1 1565 104 0 5 chr1 21505722 21505933 -221158420 - AluSg/x SINE Alu -18 294 85 263 346 78 0 chr1 21506434 21506587 -221157766 + L2 LINE L2 975 1139 -2175 510 248 0 0 chr1 21506610 21506767 -221157586 + (CA)n Simple_repeat Simple_repeat 2 158 0 2274 99 0 3 chr1 21506795 21507107 -221157246 - AluSx SINE Alu -1 311 1 510 258 12 18 chr1 21507333 21507496 -221156857 + L2 LINE L2 1580 1741 -1573 193 254 63 0 chr1 21507484 21507547 -221156806 + L2 LINE L2 3206 3272 0 * 408 219 49 71 chr1 21507613 21507813 -221156540 - MIR SINE MIR -13 195 27 1767 153 14 4 chr1 21508944 21509256 -221155097 + AluJo SINE Alu 1 315 0 399 269 48 0 chr1 21509773 21509877 -221154476 + MIR SINE MIR 24 132 -76 320 276 149 15 chr1 21510257 21510391 -221153962 - L2 LINE L2 -2 3311 3160 1184 306 90 36 chr1 21510458 21510564 -221153789 - L2 LINE L2 -140 3173 3074 1908 165 3 0 chr1 21510564 21510867 -221153486 - AluJo SINE Alu -8 304 1 1184 306 90 36 chr1 21510867 21510893 -221153460 - L2 LINE L2 -239 3074 3051 1994 114 0 29 chr1 21510893 21511201 -221153152 + AluSx SINE Alu 1 299 -13 1184 306 90 36 chr1 21511201 21511681 -221152672 - L2 LINE L2 -262 3051 2519 2000 102 7 7 chr1 21511681 21511989 -221152364 - AluSx SINE Alu 0 308 1 1184 306 90 36 chr1 21511989 21512208 -221152145 - L2 LINE L2 -794 2519 2313 1275 268 44 19 chr1 21512245 21512722 -221151631 + MER74B LTR ERVL 66 554 -68 2216 96 7 0 chr1 21512770 21513072 -221151281 + AluY SINE Alu 1 304 -7 698 343 108 10 chr1 21513080 21513578 -221150775 - L2 LINE L2 -1058 2256 1710 388 315 7 60 chr1 21513692 21513841 -221150512 - MIR SINE MIR -33 229 89 392 315 34 99 chr1 21514326 21514618 -221149735 + L2 LINE L2 3000 3272 0 517 217 6 22 chr1 21514644 21514962 -221149391 + (TGGA)n Simple_repeat Simple_repeat 1 312 0 811 159 0 11 chr1 21515001 21515183 -221149170 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 203 294 0 0 chr1 21515183 21515234 -221149119 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 183 288 0 0 chr1 21515243 21515309 -221149044 + (TGGA)n Simple_repeat Simple_repeat 1 66 0 1033 75 0 0 chr1 21515430 21515564 -221148789 + AluY SINE Alu 163 296 -15 665 284 23 28 chr1 21516563 21516781 -221147572 - MIR SINE MIR -13 249 33 219 347 53 33 chr1 21516926 21517076 -221147277 + MIR SINE MIR 21 145 -63 1641 170 182 30 chr1 21517076 21517511 -221146842 + LTR64 LTR ERVK 1 501 -57 2060 123 10 10 chr1 21517512 21517822 -221146531 - AluJo SINE Alu 0 312 3 2204 96 0 0 chr1 21517927 21518228 -221146125 + AluSx SINE Alu 1 301 0 1837 175 19 10 chr1 21518228 21518537 -221145816 + AluJb SINE Alu 1 312 0 992 158 0 34 chr1 21518545 21518722 -221145631 + AluJo SINE Alu 118 288 -24 420 351 16 5 chr1 21518733 21518921 -221145432 + L1ME LINE L1 5548 5737 -384 1800 144 44 3 chr1 21519111 21519400 -221144953 + AluJo SINE Alu 1 304 -8 474 18 0 0 chr1 21519400 21519455 -221144898 + (TG)n Simple_repeat Simple_repeat 2 56 0 305 302 43 50 chr1 21519480 21519619 -221144734 + L1MC5 LINE L1 7575 7712 -249 783 171 0 16 chr1 21519956 21520085 -221144268 - AluJb SINE Alu -58 254 128 681 242 35 32 chr1 21520215 21520448 -221143905 + MIR SINE MIR 20 256 -6 606 214 184 30 chr1 21520561 21520727 -221143626 + MIR SINE MIR 25 229 -33 1881 150 41 0 chr1 21520727 21521021 -221143332 + AluJb SINE Alu 1 306 -6 606 214 184 30 chr1 21521021 21521055 -221143298 + MIR SINE MIR 229 256 -6 463 302 82 0 chr1 21521632 21521814 -221142539 + MIR SINE MIR 65 261 -1 401 274 131 24 chr1 21522669 21522837 -221141516 + MIR SINE MIR 60 245 -17 482 260 58 35 chr1 21523400 21523573 -221140780 + MIR SINE MIR 16 192 -70 499 186 35 35 chr1 21524032 21524145 -221140208 + FLAM_A SINE Alu 1 113 -29 313 290 77 69 chr1 21524156 21524628 -221139725 - L1MCa LINE L1 -30 8211 7744 2178 124 0 0 chr1 21524628 21524911 -221139442 - AluSx SINE Alu -26 286 4 313 290 77 69 chr1 21524911 21524932 -221139421 - L1MCa LINE L1 -497 7744 1875 231 58 19 39 chr1 21525473 21525525 -221138828 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 2208 97 0 35 chr1 21525525 21525664 -221138689 + AluSx SINE Alu 5 147 -165 2512 71 0 0 chr1 21525664 21525959 -221138394 + AluY SINE Alu 1 295 -16 2208 97 0 35 chr1 21525959 21526138 -221138215 + AluSx SINE Alu 147 312 0 2292 119 0 0 chr1 21526139 21526434 -221137919 + AluSx SINE Alu 7 301 -11 282 339 65 0 chr1 21526692 21526816 -221137537 + MIR SINE MIR 117 248 -14 2242 98 20 3 chr1 21527583 21527880 -221136473 + AluSx SINE Alu 1 302 -10 196 282 28 0 chr1 21528203 21528274 -221136079 - L2 LINE L2 -279 2993 2921 372 183 14 0 chr1 21528407 21528478 -221135875 - L2 LINE L2 -43 3229 3158 1698 58 53 0 chr1 21528676 21528883 -221135470 + AluSq SINE Alu 1 218 -95 224 233 0 27 chr1 21529398 21529471 -221134882 + G-rich Low_complexity Low_complexity 3 73 0 2029 96 100 4 chr1 21530126 21530406 -221133947 + AluSq SINE Alu 1 307 -6 199 333 0 0 chr1 21530520 21530571 -221133782 - L2 LINE L2 -23 3290 3240 1205 151 196 8 chr1 21530682 21530927 -221133426 - AluJo SINE Alu -11 291 1 196 162 68 68 chr1 21533903 21533977 -221130376 + MIR3 SINE MIR 81 154 -54 942 186 0 23 chr1 21534649 21534821 -221129532 + FRAM SINE Alu 1 165 -11 398 312 0 0 chr1 21534985 21535126 -221129227 - MIR SINE MIR -37 225 85 215 329 53 0 chr1 21536444 21536520 -221127833 - L2 LINE L2 -1 3271 3192 500 238 16 25 chr1 21536586 21536708 -221127645 + MIR SINE MIR 13 133 -129 267 270 90 0 chr1 21537195 21537295 -221127058 - L2 LINE L2 -244 3028 2920 262 289 58 13 chr1 21537907 21538063 -221126290 + MIR SINE MIR 24 186 -76 225 236 19 57 chr1 21539326 21539432 -221124921 + MIR SINE MIR 32 133 -129 273 293 134 65 chr1 21539770 21540060 -221124293 - L2 LINE L2 -3 3310 3001 295 223 189 9 chr1 21540965 21541071 -221123282 + MIR SINE MIR 27 150 -68 205 360 0 24 chr1 21541780 21541905 -221122448 + G-rich Low_complexity Low_complexity 3 124 0 351 191 38 92 chr1 21542594 21542725 -221121628 - MIR3 SINE MIR -78 130 7 278 242 56 10 chr1 21542944 21543075 -221121278 + MIR SINE MIR 33 172 -62 280 247 27 33 chr1 21543586 21543736 -221120617 + C-rich Low_complexity Low_complexity 2 150 0 334 338 82 34 chr1 21544762 21544969 -221119384 + MIR SINE MIR 46 262 0 229 188 0 21 chr1 21545021 21545069 -221119284 - Alu SINE Alu -13 289 243 324 118 0 4 chr1 21545079 21545132 -221119221 - Alu SINE Alu -17 285 243 263 114 0 23 chr1 21545132 21545176 -221119177 - Alu SINE Alu -17 285 243 1145 145 24 58 chr1 21545186 21545393 -221118960 - AluJb SINE Alu -27 285 86 208 234 16 47 chr1 21545887 21545951 -221118402 - L2 LINE L2 -39 3274 3213 2460 87 3 0 chr1 21545967 21546266 -221118087 + AluSq SINE Alu 1 300 -13 2334 44 4 7 chr1 21546436 21546711 -221117642 + AluY SINE Alu 1 274 -37 1773 138 63 0 chr1 21546711 21546979 -221117374 - AluSx SINE Alu -26 286 1 2601 62 3 0 chr1 21547852 21548156 -221116197 + AluSp SINE Alu 1 305 -8 1399 194 74 7 chr1 21548163 21548446 -221115907 + AluJo SINE Alu 3 304 -8 1743 148 44 75 chr1 21548467 21548852 -221115501 + MLT1B LTR MaLR 18 390 0 679 158 25 8 chr1 21548873 21548993 -221115360 + FLAM_A SINE Alu 1 122 -11 369 176 157 10 chr1 21549098 21549200 -221115153 - MIR3 SINE MIR -15 193 77 372 215 13 0 chr1 21550549 21550628 -221113725 - MIR SINE MIR -120 142 63 2126 135 3 0 chr1 21551459 21551756 -221112597 + AluSx SINE Alu 1 298 -14 1496 207 23 10 chr1 21552156 21552456 -221111897 + AluJo SINE Alu 1 304 -8 233 326 61 20 chr1 21553665 21553763 -221110590 - L3 LINE CR1 -9 1568 1467 23 0 0 0 chr1 21554956 21554979 -221109374 + AT_rich Low_complexity Low_complexity 1 23 0 2101 129 10 3 chr1 21554999 21555308 -221109045 + AluY SINE Alu 1 311 0 2165 97 17 7 chr1 21555403 21555720 -221108633 + AluSx SINE Alu 1 312 0 293 272 0 12 chr1 21557521 21557602 -221106751 - L2 LINE L2 -2 3311 3232 369 0 0 0 chr1 21557804 21557845 -221106508 + (TG)n Simple_repeat Simple_repeat 2 42 0 701 189 0 0 chr1 21557853 21557975 -221106378 - FLAM_A SINE Alu -11 122 1 196 260 13 52 chr1 21558171 21558248 -221106105 + L2 LINE L2 3240 3313 0 1840 159 11 3 chr1 21558366 21558649 -221105704 + AluJb SINE Alu 16 300 -12 912 239 61 22 chr1 21558828 21559058 -221105295 - MER8 DNA MER2_type 0 239 1 183 80 0 0 chr1 21559466 21559491 -221104862 + (CATA)n Simple_repeat Simple_repeat 3 27 0 811 168 0 0 chr1 21559514 21559633 -221104720 - FLAM_C SINE Alu -23 120 2 272 290 20 20 chr1 21559637 21559737 -221104616 - MIR3 SINE MIR -20 188 89 2134 84 0 58 chr1 21560082 21560393 -221103960 + AluY SINE Alu 1 293 -18 2181 131 0 10 chr1 21560963 21561276 -221103077 - AluSg SINE Alu 0 310 1 1718 143 37 24 chr1 21561831 21561940 -221102413 + AluSx SINE Alu 15 121 -191 513 0 0 0 chr1 21561940 21561997 -221102356 + (CA)n Simple_repeat Simple_repeat 2 58 0 1718 143 37 24 chr1 21561997 21562181 -221102172 + AluSx SINE Alu 121 312 0 2158 153 32 43 chr1 21562233 21562425 -221101928 + Tigger2a DNA MER2_type 2 195 -2513 2178 133 3 0 chr1 21562425 21562734 -221101619 - AluSx SINE Alu -2 310 1 2158 153 32 43 chr1 21562734 21562979 -221101374 + Tigger2a DNA MER2_type 195 434 0 1537 211 10 10 chr1 21563064 21563372 -221100981 + AluJo SINE Alu 5 312 0 3748 209 40 26 chr1 21563494 21563596 -221100757 + Charlie1a DNA MER1_type 2 101 -2660 2177 92 34 7 chr1 21563596 21563889 -221100464 + AluSx SINE Alu 2 302 -10 3748 209 40 26 chr1 21563889 21563901 -221100452 + Charlie1a DNA MER1_type 101 111 -2650 2161 124 16 0 chr1 21563901 21564207 -221100146 - AluSx SINE Alu -1 311 1 3748 209 40 26 chr1 21564207 21564565 -221099788 + Charlie1a DNA MER1_type 111 463 -2298 2303 88 0 7 chr1 21564565 21564859 -221099494 - AluSg SINE Alu -18 292 1 3748 209 40 26 chr1 21564859 21565340 -221099013 + Charlie1a DNA MER1_type 463 970 -485 4673 200 114 23 chr1 21565340 21566903 -221097450 + L1MB7 LINE L1 3841 5643 -541 1901 165 0 23 chr1 21566903 21567206 -221097147 + AluJb SINE Alu 1 296 -16 4673 200 114 23 chr1 21567206 21567714 -221096639 + L1MB7 LINE L1 5643 6104 -80 727 206 119 35 chr1 21567714 21568025 -221096328 + Charlie1 DNA MER1_type 2186 2522 -239 839 190 0 0 chr1 21568053 21568195 -221096158 + AluJb SINE Alu 149 290 -22 978 134 13 92 chr1 21568218 21568326 -221096027 + Charlie1 DNA MER1_type 2542 2622 -139 1979 141 30 10 chr1 21568326 21568625 -221095728 - AluSx SINE Alu -5 307 3 978 134 13 92 chr1 21568625 21568754 -221095599 + Charlie1 DNA MER1_type 2622 2760 -1 2412 100 3 0 chr1 21568978 21569288 -221095065 - AluSp SINE Alu -2 311 1 2254 122 0 6 chr1 21569481 21569793 -221094560 + AluSg SINE Alu 1 310 0 254 280 120 30 chr1 21569868 21569968 -221094385 - MIR SINE MIR 0 262 154 2223 106 0 3 chr1 21569970 21570263 -221094090 - AluY SINE Alu -19 292 1 1846 163 3 26 chr1 21570263 21570570 -221093783 - AluJb SINE Alu -12 300 1 355 235 103 15 chr1 21570594 21570730 -221093623 + L1MC5 LINE L1 7526 7673 -288 2267 103 3 10 chr1 21570736 21571037 -221093316 + AluSp SINE Alu 1 299 -14 610 199 34 14 chr1 21571125 21571271 -221093082 + MLT1A1 LTR MaLR 169 317 -48 2475 249 76 62 chr1 21571290 21571498 -221092855 - L2 LINE L2 -252 3061 2857 2383 88 0 16 chr1 21571498 21571803 -221092550 - AluSg SINE Alu -10 300 1 2475 249 76 62 chr1 21571803 21571875 -221092478 - L2 LINE L2 -456 2857 2787 1529 220 3 10 chr1 21571875 21572171 -221092182 + AluJo SINE Alu 3 296 -16 2055 109 25 0 chr1 21572177 21572472 -221091881 + AluSx SINE Alu 1 302 0 2475 249 76 62 chr1 21572472 21572657 -221091696 - L2 LINE L2 -530 2783 2602 2073 127 20 7 chr1 21572657 21572957 -221091396 - AluSx SINE Alu -8 304 1 2475 249 76 62 chr1 21572957 21573681 -221090672 - L2 LINE L2 -711 2602 1787 243 163 0 0 chr1 21574083 21574126 -221090227 + MER4A LTR ERV1 1 43 -621 1891 134 26 19 chr1 21574176 21574528 -221089825 + MER4A LTR ERV1 252 664 0 1357 204 71 34 chr1 21574543 21574867 -221089486 + MSTB LTR MaLR 40 375 -51 226 143 0 36 chr1 21575477 21575533 -221088820 + (TA)n Simple_repeat Simple_repeat 2 55 0 345 82 0 8 chr1 21575534 21575588 -221088765 - Alu SINE Alu -14 287 245 301 79 0 0 chr1 21575572 21575610 -221088743 - Alu SINE Alu -265 38 1 * 1183 114 0 6 chr1 21575969 21576135 -221088218 - AluSq SINE Alu -20 293 129 1066 163 6 0 chr1 21576333 21576505 -221087848 + AluSq SINE Alu 122 294 -19 2196 125 6 0 chr1 21576505 21576816 -221087537 + AluSq SINE Alu 1 313 0 2143 117 20 0 chr1 21577307 21577607 -221086746 + AluSx SINE Alu 1 306 -6 2029 136 3 0 chr1 21577628 21577914 -221086439 + AluSp SINE Alu 1 287 -26 1852 154 0 17 chr1 21578274 21578598 -221085755 + AluSx SINE Alu 1 319 0 1972 117 17 7 chr1 21578655 21578945 -221085408 + AluSx SINE Alu 1 293 -19 226 300 110 50 chr1 21578987 21579087 -221085266 + MIR SINE MIR 18 123 -139 230 209 0 0 chr1 21579100 21579143 -221085210 + L2 LINE L2 3214 3256 -16 225 260 14 41 chr1 21579470 21579543 -221084810 + MIR SINE MIR 80 150 -112 2528 58 0 0 chr1 21579783 21580078 -221084275 + AluY SINE Alu 1 295 -16 1944 143 43 0 chr1 21580176 21580455 -221083898 + AluSx SINE Alu 1 291 -21 1354 143 76 90 chr1 21580711 21580894 -221083459 - AluJo SINE Alu -15 297 118 1891 168 7 0 chr1 21580894 21581203 -221083150 + AluJb SINE Alu 1 311 -1 1354 143 76 90 chr1 21581203 21581320 -221083033 - AluJo SINE Alu -194 118 1 190 296 239 0 chr1 21581571 21581713 -221082640 + MIR3 SINE MIR 33 208 0 1691 166 28 0 chr1 21581949 21582233 -221082120 - AluJo SINE Alu -20 292 1 34 65 0 0 chr1 21584826 21584888 -221079465 + AT_rich Low_complexity Low_complexity 1 62 0 244 308 99 44 chr1 21585543 21585725 -221078628 + MIR SINE MIR 2 193 -69 716 169 0 0 chr1 21585840 21585958 -221078395 + FLAM_C SINE Alu 1 118 -15 261 75 0 0 chr1 21585962 21586002 -221078351 + (CA)n Simple_repeat Simple_repeat 2 41 0 3121 147 48 19 chr1 21586113 21586321 -221078032 + Tigger3b DNA MER2_type 3 204 -2824 2260 89 0 30 chr1 21586321 21586625 -221077728 + AluSc SINE Alu 1 295 -14 3121 147 48 19 chr1 21586625 21586939 -221077414 + Tigger3b DNA MER2_type 204 540 -691 629 261 0 0 chr1 21586939 21587069 -221077284 - FLAM_A SINE Alu -12 130 1 2657 123 43 0 chr1 21587165 21587556 -221076797 + Tigger3b DNA MER2_type 823 1230 -1 33 0 0 0 chr1 21587629 21587662 -221076691 + AT_rich Low_complexity Low_complexity 1 33 0 207 152 0 0 chr1 21588896 21588942 -221075411 + A-rich Low_complexity Low_complexity 1 46 0 2264 104 0 3 chr1 21589068 21589377 -221074976 - AluY SINE Alu -3 308 1 232 256 0 49 chr1 21590308 21590390 -221073963 + MER117 DNA MER1_type 78 155 -42 2250 115 7 0 chr1 21590411 21590715 -221073638 - AluSx SINE Alu -6 306 1 259 247 22 22 chr1 21590808 21590897 -221073456 + A-rich Low_complexity Low_complexity 2 90 0 2356 90 3 0 chr1 21593252 21593551 -221070802 - AluSx SINE Alu -12 300 1 640 227 23 0 chr1 21593786 21593914 -221070439 + AluJo SINE Alu 6 136 -176 1704 167 16 22 chr1 21593927 21594238 -221070115 + AluJb SINE Alu 1 309 -3 2553 75 3 0 chr1 21594246 21594553 -221069800 + AluSg SINE Alu 1 308 -2 887 213 6 0 chr1 21594573 21594760 -221069593 + AluJo SINE Alu 118 305 0 2134 119 10 13 chr1 21594864 21595176 -221069177 + AluSx SINE Alu 1 311 -1 1130 95 0 0 chr1 21595273 21595420 -221068933 + AluSg/x SINE Alu 161 307 -5 1756 169 38 0 chr1 21595605 21595895 -221068458 - AluJb SINE Alu -11 301 1 375 262 10 19 chr1 21595970 21596073 -221068280 + L2 LINE L2 3212 3313 0 2518 56 7 0 chr1 21596095 21596401 -221067952 - AluY SINE Alu -3 308 1 1582 138 89 11 chr1 21596568 21596837 -221067516 - AluJb SINE Alu -22 290 1 21 0 0 0 chr1 21598313 21598334 -221066019 + GC_rich Low_complexity Low_complexity 1 21 0 268 228 31 47 chr1 21598879 21599006 -221065347 + C-rich Low_complexity Low_complexity 2 126 0 25 75 0 0 chr1 21599022 21599075 -221065278 + GC_rich Low_complexity Low_complexity 1 53 0 1561 142 43 25 chr1 21600180 21600461 -221063892 + AluJo SINE Alu 1 286 -26 1336 175 35 45 chr1 21600472 21600613 -221063740 + AluJb SINE Alu 5 146 -166 2180 92 20 7 chr1 21600613 21600907 -221063446 + AluY SINE Alu 1 298 -13 1336 175 35 45 chr1 21600907 21601051 -221063302 + AluJb SINE Alu 146 287 -25 2077 96 58 3 chr1 21601058 21601349 -221063004 + AluSg SINE Alu 1 307 -3 2069 138 3 0 chr1 21601353 21601664 -221062689 + AluSx SINE Alu 1 312 0 2288 105 0 0 chr1 21602026 21602322 -221062031 - AluSx SINE Alu -16 296 1 699 194 16 0 chr1 21602586 21602710 -221061643 - FLAM_A SINE Alu -7 126 1 2131 97 31 3 chr1 21603130 21603420 -221060933 - AluSx SINE Alu -8 304 7 25 0 0 0 chr1 21603628 21603653 -221060700 + AT_rich Low_complexity Low_complexity 1 25 0 1566 164 63 4 chr1 21603653 21603921 -221060432 - AluJo SINE Alu -28 284 1 340 173 0 0 chr1 21604435 21604487 -221059866 + MER46C DNA MER2_type 285 336 -2 1444 129 62 0 chr1 21604491 21604732 -221059621 - Tigger7 DNA MER2_type 0 2487 2232 755 142 8 24 chr1 21604733 21604860 -221059493 + AluJb SINE Alu 2 126 -186 309 153 0 34 chr1 21604861 21604920 -221059433 - Tigger7 DNA MER2_type -281 58 2 354 150 133 133 chr1 21605665 21605723 -221058630 + MER81 DNA DNA 2 62 -52 2199 119 7 0 chr1 21605723 21606026 -221058327 - AluSg SINE Alu -5 305 1 354 150 133 133 chr1 21606026 21606080 -221058273 + MER81 DNA DNA 61 114 0 1261 168 0 0 chr1 21606167 21606370 -221057983 + AluSx SINE Alu 1 203 -109 570 99 0 25 chr1 21606370 21606554 -221057799 + AluSx SINE Alu 69 303 0 1275 98 0 0 chr1 21606554 21606718 -221057635 + AluSx SINE Alu 132 295 -15 2351 75 0 3 chr1 21606949 21607242 -221057111 - AluSc SINE Alu -17 292 1 2332 75 0 0 chr1 21607515 21607822 -221056531 - AluY SINE Alu 0 307 1 2574 60 0 16 chr1 21608171 21608486 -221055867 + AluY SINE Alu 2 311 0 2466 81 0 7 chr1 21608559 21608866 -221055487 + AluSx SINE Alu 1 305 -7 266 253 105 11 chr1 21609003 21609098 -221055255 - MIR SINE MIR -37 225 122 1350 165 139 0 chr1 21609098 21609364 -221054989 + AluJb SINE Alu 1 303 -9 645 211 76 23 chr1 21609832 21610003 -221054350 - MER5A DNA MER1_type 0 189 10 402 131 16 0 chr1 21610206 21610267 -221054086 + AluS SINE Alu 1 62 -246 621 182 25 8 chr1 21660267 21660388 -221003965 - AluJb SINE Alu -188 124 2 185 245 75 0 chr1 21660416 21660469 -221003884 - MIR SINE MIR -136 72 16 351 317 33 0 chr1 21660550 21660670 -221003683 + MIR SINE MIR 117 240 -22 187 333 48 8 chr1 21661204 21661330 -221003023 - L2 LINE L2 -248 3024 2894 1136 204 63 5 chr1 21661969 21662190 -221002163 - AluJo SINE Alu -78 234 1 336 137 0 0 chr1 21662190 21662241 -221002112 - Alu SINE Alu -9 292 242 28 0 0 0 chr1 21662241 21662269 -221002084 + AT_rich Low_complexity Low_complexity 1 28 0 1794 166 26 0 chr1 21662609 21662911 -221001442 - AluJo SINE Alu -2 310 1 6811 20 7 2 chr1 21663494 21664352 -221000001 - L1PA4 LINE L1 -80 6075 5211 2310 90 0 56 chr1 21664891 21665214 -220999139 + AluSx SINE Alu 1 305 -7 1703 168 18 18 chr1 21665505 21665790 -220998563 + AluJo SINE Alu 1 285 -27 1192 131 0 0 chr1 21665935 21666095 -220998258 + AluSg/x SINE Alu 132 291 -21 506 251 42 33 chr1 21666346 21666561 -220997792 + SVA Other Other 649 865 -521 6498 77 23 32 chr1 21666628 21667591 -220996762 + SVA Other Other 433 1386 0 196 0 56 56 chr1 21667595 21667631 -220996722 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 1752 154 45 3 chr1 21668013 21668305 -220996048 - AluJb SINE Alu -8 304 1 1979 150 3 10 chr1 21668688 21668988 -220995365 + AluJb SINE Alu 1 298 -14 678 195 23 0 chr1 21669269 21669397 -220994956 - FLAM_A SINE Alu -2 131 1 31 26 0 0 chr1 21669587 21669625 -220994728 + AT_rich Low_complexity Low_complexity 1 38 0 525 155 0 0 chr1 21669657 21669741 -220994612 - AluJb SINE Alu -20 292 209 495 121 0 147 chr1 21669747 21669882 -220994471 - AluJb SINE Alu 0 312 212 2111 92 7 13 chr1 21669882 21670187 -220994166 + L1PA13 LINE L1 5861 6163 0 495 121 0 147 chr1 21670187 21670200 -220994153 - AluJb SINE Alu -100 212 199 260 113 52 41 chr1 21670200 21670297 -220994056 + GA-rich Low_complexity Low_complexity 1 98 0 6660 122 93 12 chr1 21670303 21671460 -220992893 + MER52C LTR ERV1 28 1278 0 523 295 78 50 chr1 21671566 21671885 -220992468 - L1M4c LINE L1 -6028 356 29 2144 89 4 7 chr1 21672229 21672509 -220991844 - AluSx SINE Alu -33 279 1 2388 69 3 16 chr1 21672581 21672884 -220991469 - AluY SINE Alu -11 300 2 2306 75 0 0 chr1 21673234 21673541 -220990812 + AluY SINE Alu 1 307 0 2271 76 7 3 chr1 21673814 21674105 -220990248 + AluSc SINE Alu 1 292 -17 1261 98 0 0 chr1 21674336 21674500 -220989853 - AluSx SINE Alu -15 297 134 198 0 0 0 chr1 21674500 21674522 -220989831 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 601 122 0 0 chr1 21674522 21674604 -220989749 - AluSx SINE Alu -28 281 200 429 50 0 67 chr1 21674609 21674669 -220989684 - AluSx SINE Alu -174 139 84 1541 142 43 25 chr1 21675621 21675902 -220988451 + AluJo SINE Alu 1 286 -26 1321 175 35 45 chr1 21675913 21676054 -220988299 + AluJb SINE Alu 5 146 -166 2163 92 20 7 chr1 21676054 21676348 -220988005 + AluY SINE Alu 1 298 -13 1321 175 35 45 chr1 21676348 21676492 -220987861 + AluJb SINE Alu 146 287 -25 2046 97 59 3 chr1 21676499 21676789 -220987564 + AluSg SINE Alu 1 306 -4 2052 138 3 0 chr1 21676793 21677104 -220987249 + AluSx SINE Alu 1 312 0 2269 105 0 0 chr1 21677464 21677760 -220986593 - AluSx SINE Alu -16 296 1 750 194 16 0 chr1 21678024 21678148 -220986205 - FLAM_A SINE Alu -7 126 1 2115 97 31 3 chr1 21678568 21678858 -220985495 - AluSx SINE Alu -8 304 7 25 0 0 0 chr1 21679067 21679092 -220985261 + AT_rich Low_complexity Low_complexity 1 25 0 1552 164 63 4 chr1 21679092 21679360 -220984993 - AluJo SINE Alu -28 284 1 343 173 0 0 chr1 21679874 21679926 -220984427 + MER46C DNA MER2_type 285 336 -2 1461 129 62 0 chr1 21679930 21680171 -220984182 - Tigger7 DNA MER2_type 0 2487 2232 805 142 8 24 chr1 21680172 21680299 -220984054 + AluJb SINE Alu 2 126 -186 307 153 0 34 chr1 21680300 21680359 -220983994 - Tigger7 DNA MER2_type -281 58 2 392 150 133 133 chr1 21681104 21681162 -220983191 + MER81 DNA DNA 2 62 -52 2181 119 7 0 chr1 21681162 21681465 -220982888 - AluSg SINE Alu -5 305 1 392 150 133 133 chr1 21681465 21681519 -220982834 + MER81 DNA DNA 61 114 0 439 236 51 32 chr1 21681679 21681836 -220982517 - L1MEd LINE L1 -2787 3342 3183 787 96 0 0 chr1 21681836 21681940 -220982413 - AluSg/x SINE Alu -3 309 206 567 222 189 23 chr1 21681940 21682069 -220982284 - L1MEd LINE L1 -2938 3191 3085 852 163 0 15 chr1 21682069 21682204 -220982149 - FLAM_C SINE Alu 0 133 1 567 222 189 23 chr1 21682204 21682380 -220981973 - L1MEd LINE L1 -3044 3085 2835 434 276 84 41 chr1 21682383 21682798 -220981555 - L1MEd LINE L1 -4756 1554 1080 1565 191 33 3 chr1 21682852 21683155 -220981198 - AluJo SINE Alu 0 312 1 417 310 78 20 chr1 21683239 21683484 -220980869 - L1MEd LINE L1 -5295 824 566 183 129 0 0 chr1 21684719 21684750 -220979603 + (A)n Simple_repeat Simple_repeat 1 31 0 519 208 8 54 chr1 21684809 21684939 -220979414 + FLAM_A SINE Alu 1 124 -9 323 279 51 13 chr1 21685488 21685567 -220978786 - MIR SINE MIR -158 104 23 2193 110 0 0 chr1 21685659 21685941 -220978412 - AluSx SINE Alu -25 287 6 2541 81 0 0 chr1 21685958 21686267 -220978086 - AluSc SINE Alu 0 309 1 2280 113 3 0 chr1 21687509 21687809 -220976544 - AluSc SINE Alu -8 301 1 362 177 9 106 chr1 21687948 21688061 -220976292 + MER103 DNA DNA 24 125 -41 229 382 24 8 chr1 21688983 21689106 -220975247 - L2 LINE L2 -229 3084 2960 31 26 0 0 chr1 21690737 21690775 -220973578 + AT_rich Low_complexity Low_complexity 1 38 0 11555 23 4 1 chr1 21691085 21693131 -220971222 - L1PA2 LINE L1 0 6155 4106 2490 24 0 0 chr1 21693131 21693419 -220970934 + L1PA2 LINE L1 3842 4129 -2017 21 0 0 0 chr1 21693419 21693440 -220970913 + AT_rich Low_complexity Low_complexity 1 21 0 5631 204 81 18 chr1 21693513 21693644 -220970709 + L1M1 LINE L1 3503 3624 -3941 1425 189 57 17 chr1 21693644 21693941 -220970412 + AluJb SINE Alu 1 309 -3 5631 204 81 18 chr1 21693941 21695135 -220969218 + L1M1 LINE L1 3624 4951 -2614 1778 185 10 0 chr1 21695135 21695432 -220968921 + AluJb SINE Alu 1 300 -12 5631 204 81 18 chr1 21695432 21695559 -220968794 + L1M1 LINE L1 4951 5069 -2496 1035 175 0 6 chr1 21695560 21695726 -220968627 - AluJb SINE Alu -113 199 35 1596 195 3 13 chr1 21695726 21696024 -220968329 - AluJo SINE Alu -17 295 1 2299 86 14 0 chr1 21696690 21696981 -220967372 - AluSc SINE Alu -14 295 1 1858 172 14 0 chr1 21698163 21698454 -220965899 - AluJb SINE Alu -17 295 1 2103 101 7 3 chr1 21698465 21698753 -220965600 - AluSg SINE Alu -21 289 1 1086 90 0 0 chr1 21698753 21698886 -220965467 - AluSg SINE Alu -176 134 2 1725 127 80 4 chr1 21698990 21699265 -220965088 - AluSx SINE Alu -16 296 1 280 246 18 0 chr1 21700718 21700775 -220963578 + U7 snRNA snRNA 2 59 -4 28 0 0 0 chr1 21700777 21700805 -220963548 + AT_rich Low_complexity Low_complexity 1 28 0 387 280 47 51 chr1 21701609 21701845 -220962508 - L1MC4a LINE L1 -125 7683 7449 2151 125 7 0 chr1 21701846 21702142 -220962211 - AluSp SINE Alu -15 298 1 366 226 43 0 chr1 21702223 21702316 -220962037 - HAL1 LINE L1 -2309 198 102 1702 164 34 20 chr1 21702321 21702614 -220961739 - AluJo SINE Alu -15 297 1 1990 125 0 3 chr1 21702709 21703019 -220961334 + AluSx SINE Alu 1 309 0 7111 157 32 34 chr1 21703121 21704035 -220960318 - L1PA12 LINE L1 0 6168 5254 2232 81 36 23 chr1 21704035 21704344 -220960009 + AluSq SINE Alu 1 313 0 7111 157 32 34 chr1 21704344 21704856 -220959497 - L1PA12 LINE L1 -914 5254 4743 2364 67 0 0 chr1 21704856 21705178 -220959175 + AluY SINE Alu 1 322 0 7111 157 32 34 chr1 21705178 21705856 -220958497 - L1PA12 LINE L1 -1425 4743 4051 308 259 171 85 chr1 21705897 21706202 -220958151 + L2 LINE L2 2965 3295 -18 471 230 230 29 chr1 21706203 21706412 -220957941 + MIR SINE MIR 6 256 -6 779 318 5 5 chr1 21706540 21706760 -220957593 + MIR SINE MIR 31 250 -12 2071 126 13 3 chr1 21707440 21707741 -220956612 - AluJb SINE Alu -8 304 1 263 298 119 0 chr1 21707958 21708042 -220956311 + L2 LINE L2 3113 3206 -66 227 287 139 28 chr1 21708103 21708211 -220956142 + MIR SINE MIR 65 184 -78 2385 103 3 0 chr1 21708241 21708551 -220955802 + AluSx SINE Alu 1 311 -1 23 54 0 0 chr1 21709024 21709061 -220955292 + AT_rich Low_complexity Low_complexity 1 37 0 535 248 45 19 chr1 21710077 21710234 -220954119 - MIR SINE MIR -1 261 101 1560 135 0 0 chr1 21711215 21711445 -220952908 + AluSq SINE Alu 1 230 -83 2328 75 0 3 chr1 21711621 21711914 -220952439 - AluSc SINE Alu -17 292 1 2305 75 0 0 chr1 21712187 21712494 -220951859 - AluY SINE Alu 0 307 1 2432 69 0 16 chr1 21712844 21713148 -220951205 + AluY SINE Alu 2 300 -11 2525 76 0 6 chr1 21713220 21713534 -220950819 + AluSx SINE Alu 1 312 0 292 253 105 11 chr1 21713676 21713771 -220950582 - MIR SINE MIR -37 225 122 1334 165 139 0 chr1 21713771 21714037 -220950316 + AluJb SINE Alu 1 303 -9 706 211 76 23 chr1 21714505 21714676 -220949677 - MER5A DNA MER1_type 0 189 10 2288 116 7 0 chr1 21714879 21715189 -220949164 + AluSx SINE Alu 1 312 0 704 247 29 29 chr1 21715630 21715682 -220948671 - MER5B DNA MER1_type -7 171 120 180 0 0 0 chr1 21715682 21715702 -220948651 + (GA)n Simple_repeat Simple_repeat 1 20 0 704 247 29 29 chr1 21715702 21715819 -220948534 - MER5B DNA MER1_type -57 121 2 185 338 14 28 chr1 21716182 21716253 -220948100 - MIR3 SINE MIR -130 78 9 617 124 0 41 chr1 21716419 21716516 -220947837 - FRAM SINE Alu -19 157 65 1398 129 14 5 chr1 21716728 21716937 -220947416 - AluSg/x SINE Alu -19 291 81 22 0 0 0 chr1 21717338 21717360 -220946993 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 21717559 21717581 -220946772 + AT_rich Low_complexity Low_complexity 1 22 0 214 191 0 0 chr1 21718148 21718190 -220946163 + A-rich Low_complexity Low_complexity 1 42 0 277 315 81 0 chr1 21718252 21718363 -220945990 - MIR SINE MIR -48 214 95 2216 118 0 0 chr1 21718469 21718766 -220945587 + AluSx SINE Alu 1 297 -15 1839 158 11 0 chr1 21719176 21719490 -220944863 - AluJb SINE Alu 0 317 1 1723 171 0 44 chr1 21719551 21719866 -220944487 - AluJo SINE Alu -11 301 1 473 276 35 14 chr1 21719876 21720021 -220944332 + MLT1J LTR MaLR 69 216 -295 774 185 0 27 chr1 21720029 21720175 -220944178 + FLAM_C SINE Alu 2 143 0 2221 110 10 0 chr1 21720209 21720519 -220943834 - AluSq SINE Alu 0 313 1 2564 174 132 137 chr1 21720619 21721076 -220943277 + L1MC3 LINE L1 6684 7142 -643 244 157 0 180 chr1 21721076 21721165 -220943188 + MLT1F1 LTR MaLR 50 122 -445 2564 174 132 137 chr1 21721165 21721295 -220943058 + L1MC3 LINE L1 7142 7271 -514 1827 141 4 18 chr1 21721295 21721571 -220942782 - AluJo SINE Alu -17 295 24 2564 174 132 137 chr1 21721571 21721985 -220942368 + L1MC3 LINE L1 7271 7769 -16 1047 121 13 0 chr1 21722173 21722330 -220942023 + AluSg/x SINE Alu 146 304 -6 23 0 0 0 chr1 21722416 21722439 -220941914 + AT_rich Low_complexity Low_complexity 1 23 0 252 303 182 10 chr1 21722745 21722844 -220941509 + L2 LINE L2 3193 3308 -5 2143 89 16 23 chr1 21723032 21723336 -220941017 + AluSx SINE Alu 1 302 -10 1143 105 0 0 chr1 21724175 21724328 -220940025 + FRAM SINE Alu 8 160 -16 1321 130 5 0 chr1 21724339 21724539 -220939814 + MER1B DNA MER1_type 1 201 -96 256 310 0 0 chr1 21725389 21725447 -220938906 + (CA)n Simple_repeat Simple_repeat 2 59 0 1095 127 6 0 chr1 21726856 21727014 -220937339 - AluSg/x SINE Alu -5 305 147 334 115 0 19 chr1 21727015 21727067 -220937286 - AluSp/q SINE Alu -96 207 157 1668 88 0 5 chr1 21727067 21727283 -220937070 - AluSq SINE Alu -98 215 1 2393 69 0 0 chr1 21727500 21727790 -220936563 + AluY SINE Alu 1 290 -21 1933 92 4 0 chr1 21728080 21728330 -220936023 - AluSq SINE Alu -19 294 44 233 278 0 0 chr1 21728805 21728816 -220935537 + MER3 DNA MER1_type 37 47 -162 551 263 134 6 chr1 21728816 21728995 -220935358 - MER3 DNA MER1_type 0 209 8 1977 136 3 26 chr1 21729077 21729244 -220935109 - AluSx SINE Alu -17 295 137 2357 100 3 0 chr1 21729244 21729554 -220934799 - AluY SINE Alu 0 311 1 1977 136 3 26 chr1 21729554 21729688 -220934665 - AluSx SINE Alu -175 137 1 2118 129 0 13 chr1 21730045 21730354 -220933999 - AluSx SINE Alu -7 305 1 198 0 0 0 chr1 21730355 21730377 -220933976 + (TTC)n Simple_repeat Simple_repeat 3 24 0 893 118 0 8 chr1 21730395 21730514 -220933839 - FLAM_C SINE Alu -25 118 1 847 103 41 0 chr1 21730770 21730915 -220933438 + L1MA7 LINE L1 6140 6290 -1 625 182 0 25 chr1 21731252 21731373 -220932980 + FLAM_A SINE Alu 11 128 -14 1726 179 3 20 chr1 21732382 21732683 -220931670 + AluJo SINE Alu 1 296 -16 1291 113 113 0 chr1 21732685 21732870 -220931483 + AluSq SINE Alu 1 206 -107 207 167 22 67 chr1 21733196 21733286 -220931067 + (TCTCTG)n Simple_repeat Simple_repeat 6 91 0 967 94 8 0 chr1 21733394 21733551 -220930802 - AluSg/x SINE Alu 0 313 156 882 55 0 0 chr1 21733552 21733662 -220930691 - AluSp SINE Alu -203 110 1 504 134 21 21 chr1 21734257 21734354 -220929999 + FLAM_A SINE Alu 43 139 -3 280 263 38 0 chr1 21735113 21735193 -220929160 - MER5A DNA MER1_type -103 86 4 1632 170 3 39 chr1 21735783 21736105 -220928248 + AluJb SINE Alu 12 323 0 22 35 0 0 chr1 21736138 21736167 -220928186 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 21736751 21736774 -220927579 + AT_rich Low_complexity Low_complexity 1 23 0 2555 59 0 3 chr1 21738240 21738544 -220925809 + AluY SINE Alu 1 303 -8 1488 252 98 42 chr1 21739279 21740047 -220924306 + L2 LINE L2 2420 3240 -73 2320 62 3 7 chr1 21740074 21740363 -220923990 + AluSg1 SINE Alu 1 288 -21 1952 131 25 0 chr1 21740958 21741252 -220923101 - AluSx SINE Alu 0 301 1 181 434 85 0 chr1 21741394 21741523 -220922830 + L2 LINE L2 3122 3261 -11 22 0 0 0 chr1 21741920 21741942 -220922411 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 21742141 21742163 -220922190 + AT_rich Low_complexity Low_complexity 1 22 0 214 191 0 0 chr1 21742730 21742772 -220921581 + A-rich Low_complexity Low_complexity 1 42 0 286 315 81 0 chr1 21742834 21742945 -220921408 - MIR SINE MIR -48 214 95 2215 118 0 0 chr1 21743051 21743348 -220921005 + AluSx SINE Alu 1 297 -15 1849 158 11 0 chr1 21743758 21744072 -220920281 - AluJb SINE Alu 0 317 1 1749 171 0 44 chr1 21744133 21744448 -220919905 - AluJo SINE Alu -11 301 1 417 276 35 14 chr1 21744458 21744603 -220919750 + MLT1J LTR MaLR 69 216 -295 720 184 0 27 chr1 21744610 21744757 -220919596 + FLAM_C SINE Alu 1 143 0 2455 87 3 0 chr1 21744791 21745103 -220919250 - AluSp SINE Alu 0 313 1 347 188 125 31 chr1 21745240 21745336 -220919017 + MLT1J LTR MaLR 403 507 -4 224 301 97 29 chr1 21748425 21748528 -220915825 + MIR SINE MIR 40 149 -59 346 346 69 15 chr1 21748609 21748739 -220915614 + MIR3 SINE MIR 9 145 -63 532 240 171 28 chr1 21748767 21748984 -220915369 + MIR SINE MIR 1 248 -14 1593 206 29 14 chr1 21749586 21749935 -220914418 - MLT1A2 LTR MaLR -3 371 18 690 171 0 89 chr1 21750672 21750818 -220913535 - FLAM_A SINE Alu 0 133 1 2567 66 0 0 chr1 21750852 21751156 -220913197 + AluY SINE Alu 1 304 -7 520 239 15 31 chr1 21751817 21751947 -220912406 - L2 LINE L2 0 3313 3186 217 250 0 0 chr1 21752302 21752350 -220912003 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 700 183 107 41 chr1 21752640 21752837 -220911516 - MER20 DNA MER1_type -2 217 8 1219 149 0 0 chr1 21753261 21753442 -220910911 - AluSg/x SINE Alu 0 312 132 1673 167 18 18 chr1 21753590 21753872 -220910481 - AluJo SINE Alu -30 282 1 2274 90 0 56 chr1 21754163 21754486 -220909867 - AluSx SINE Alu -7 305 1 621 243 148 28 chr1 21754544 21754956 -220909397 - L1ME3A LINE L1 -208 5962 5491 5299 66 32 0 chr1 21755191 21755933 -220908420 - L1PA8A LINE L1 -27 6104 5339 540 246 130 46 chr1 21755987 21756332 -220908021 - L1ME3A LINE L1 -818 5328 4955 1455 210 3 30 chr1 21756424 21756729 -220907624 - AluJo SINE Alu -15 297 1 261 271 0 0 chr1 21756774 21756844 -220907509 + L1ME3A LINE L1 6078 6147 -23 276 300 71 13 chr1 21756845 21756999 -220907354 - MER63 DNA MER1_type 0 1060 677 1490 205 8 0 chr1 21757094 21757348 -220907005 + AluJo SINE Alu 19 274 -38 1836 158 26 29 chr1 21757384 21757694 -220906659 + AluJo SINE Alu 1 309 -3 365 256 16 8 chr1 21757770 21757895 -220906458 + L1MC4a LINE L1 5757 5882 -1926 1460 150 84 25 chr1 21758160 21758434 -220905919 + AluJo SINE Alu 1 290 -22 188 314 0 20 chr1 21758626 21758677 -220905676 + MIR SINE MIR 20 69 -139 342 353 46 14 chr1 21758788 21759008 -220905345 + MIR SINE MIR 37 261 -1 474 286 47 42 chr1 21759082 21759274 -220905079 - MIR SINE MIR -13 249 57 2048 106 0 75 chr1 21759291 21759611 -220904742 - AluSx SINE Alu -16 296 1 21 36 0 0 chr1 21759614 21759642 -220904711 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 21761031 21761055 -220903298 + AT_rich Low_complexity Low_complexity 1 24 0 463 201 24 33 chr1 21761171 21761308 -220903045 + L1ME LINE L1 5512 5649 -472 3334 219 64 43 chr1 21761457 21761915 -220902438 + L1M4 LINE L1 3950 4397 -1749 1993 148 10 3 chr1 21761915 21762218 -220902135 + AluSx SINE Alu 1 305 -7 3334 219 64 43 chr1 21762218 21762948 -220901405 + L1M4 LINE L1 4397 5163 -983 1872 173 0 3 chr1 21762949 21763238 -220901115 + AluJb SINE Alu 1 288 -24 266 0 0 29 chr1 21763249 21763284 -220901069 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1844 157 10 3 chr1 21763325 21763619 -220900734 + AluJb SINE Alu 1 296 -16 351 0 0 0 chr1 21763621 21763660 -220900693 + (CA)n Simple_repeat Simple_repeat 2 40 0 1149 156 141 51 chr1 21763687 21763784 -220900569 + AluJo SINE Alu 15 102 -210 2303 100 0 3 chr1 21763784 21764094 -220900259 + AluSx SINE Alu 3 311 -1 1149 156 141 51 chr1 21764094 21764252 -220900101 + AluJo SINE Alu 102 293 -19 1747 168 28 0 chr1 21764254 21764540 -220899813 + AluJo SINE Alu 3 296 -16 2054 120 3 19 chr1 21764781 21765090 -220899263 + AluSg SINE Alu 1 304 -6 185 272 62 12 chr1 21765808 21765889 -220898464 + MIR SINE MIR 117 201 -61 1856 114 43 85 chr1 21766292 21766644 -220897709 - MER1B DNA MER1_type 0 337 1 362 299 26 8 chr1 21766718 21766835 -220897518 - MIR SINE MIR -16 246 128 21 0 0 0 chr1 21769799 21769820 -220894533 + AT_rich Low_complexity Low_complexity 1 21 0 181 318 200 12 chr1 21769992 21770162 -220894191 + MIR SINE MIR 5 206 -56 2366 77 20 0 chr1 21770934 21771233 -220893120 - AluY SINE Alu -6 305 1 21 0 0 0 chr1 21771234 21771255 -220893098 + AT_rich Low_complexity Low_complexity 1 21 0 2092 134 0 0 chr1 21771410 21771702 -220892651 - AluSx SINE Alu -6 306 15 1837 149 0 43 chr1 21771897 21772199 -220892154 - AluJb SINE Alu -23 289 1 221 232 0 74 chr1 21772836 21772931 -220891422 + A-rich Low_complexity Low_complexity 3 90 0 2254 67 0 58 chr1 21772934 21773247 -220891106 + AluY SINE Alu 1 295 -16 564 143 0 0 chr1 21774293 21774377 -220889976 - AluJb SINE Alu -22 290 207 1329 182 3 84 chr1 21774378 21774675 -220889678 - AluJo SINE Alu -39 273 1 802 102 79 0 chr1 21775964 21776091 -220888262 + MER85 DNA T2_type 1 137 -2 6575 142 42 27 chr1 21776991 21777618 -220886735 + Tigger3b DNA MER2_type 1 656 -2372 1622 166 86 14 chr1 21777618 21777908 -220886445 + AluJo SINE Alu 1 311 -1 6575 142 42 27 chr1 21777908 21778491 -220885862 + Tigger3b DNA MER2_type 656 1229 -2 236 163 81 23 chr1 21779316 21779402 -220884951 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 620 173 0 0 chr1 21779683 21779793 -220884560 + FLAM_C SINE Alu 33 142 -1 23 0 0 0 chr1 21779794 21779817 -220884536 + AT_rich Low_complexity Low_complexity 1 23 0 635 208 106 21 chr1 21779832 21780068 -220884285 + MER112 DNA MER1_type 1 256 0 2376 86 3 0 chr1 21780173 21780474 -220883879 - AluSp SINE Alu -11 302 1 192 200 0 0 chr1 21781957 21781997 -220882356 + A-rich Low_complexity Low_complexity 1 40 0 2388 81 3 0 chr1 21783511 21783806 -220880547 - AluSg SINE Alu -14 296 1 2143 129 0 0 chr1 21784091 21784385 -220879968 - AluSx SINE Alu -18 294 1 1042 221 149 10 chr1 21784481 21784770 -220879583 + MER58B DNA MER1_type 10 338 -3 1614 183 3 10 chr1 21785792 21786092 -220878261 - AluJb SINE Alu -14 298 1 368 307 47 24 chr1 21786723 21786850 -220877503 + MIR3 SINE MIR 53 182 -26 273 29 0 0 chr1 21788256 21788290 -220876063 + (CA)n Simple_repeat Simple_repeat 2 35 0 7642 29 6 4 chr1 21788838 21789782 -220874571 - L1PA4 LINE L1 -3 6152 5213 2311 97 0 7 chr1 21790312 21790612 -220873741 + AluSx SINE Alu 1 298 -14 1857 159 0 3 chr1 21791223 21791519 -220872834 - AluJo SINE Alu -9 303 9 2165 114 7 0 chr1 21791748 21792055 -220872298 + AluSg SINE Alu 1 309 -1 1782 165 23 0 chr1 21792729 21793032 -220871321 + AluJo SINE Alu 1 310 -2 28 0 0 0 chr1 21793372 21793400 -220870953 + AT_rich Low_complexity Low_complexity 1 28 0 348 125 0 0 chr1 21793400 21793448 -220870905 + Alu SINE Alu 243 290 -12 1405 209 50 4 chr1 21793451 21793729 -220870624 + AluJo SINE Alu 1 291 -21 1250 184 48 32 chr1 21794729 21794979 -220869374 + AluJo SINE Alu 35 288 -24 503 249 56 20 chr1 21795180 21795362 -220868991 - L1M4 LINE L1 -2909 3237 3042 2512 55 0 7 chr1 21795362 21795669 -220868684 - AluY SINE Alu -6 305 1 503 249 56 20 chr1 21795669 21795735 -220868618 - L1M4 LINE L1 -3104 3042 2980 2097 185 73 29 chr1 21795737 21796213 -220868140 + MLT1D LTR MaLR 1 497 -8 873 224 190 3 chr1 21796228 21796554 -220867799 - L1M4 LINE L1 -3195 2951 2565 448 228 44 61 chr1 21796708 21796845 -220867508 - MLT1D LTR MaLR -105 400 287 3107 237 75 48 chr1 21796845 21797762 -220866591 + L1ME1 LINE L1 3553 4518 -1628 2185 69 0 4 chr1 21797762 21798038 -220866315 + AluY SINE Alu 37 311 0 3107 237 75 48 chr1 21798038 21798433 -220865920 + L1ME1 LINE L1 4518 4901 -1245 1582 226 82 53 chr1 21798431 21798775 -220865578 + L1ME1 LINE L1 5516 5881 -285 * 1708 150 10 43 chr1 21798775 21799075 -220865278 + AluJb SINE Alu 1 290 -22 1582 226 82 53 chr1 21799075 21799240 -220865113 + L1ME1 LINE L1 5881 6040 -126 1686 180 7 0 chr1 21799779 21800068 -220864285 - AluJo SINE Alu -21 291 1 793 157 8 15 chr1 21800270 21800404 -220863949 - FLAM_A SINE Alu 0 133 1 369 295 9 37 chr1 21800497 21800685 -220863668 - L1MC/D LINE L1 -736 5434 5293 1661 199 14 0 chr1 21800768 21801065 -220863288 - AluJb SINE Alu -11 301 1 2330 85 10 0 chr1 21801471 21801764 -220862589 - AluSp SINE Alu -15 298 3 27 73 0 0 chr1 21802557 21802612 -220861741 + AT_rich Low_complexity Low_complexity 1 55 0 322 247 88 65 chr1 21802775 21802945 -220861408 + L1M4 LINE L1 4649 4822 -1324 2175 92 28 0 chr1 21803872 21804156 -220860197 - AluSp SINE Alu -20 293 2 274 325 13 0 chr1 21804362 21804439 -220859914 + L2 LINE L2 3158 3235 -37 393 279 79 13 chr1 21804525 21804674 -220859679 - MIR SINE MIR -63 145 3 228 35 0 0 chr1 21805370 21805399 -220858954 + (TA)n Simple_repeat Simple_repeat 2 30 0 232 367 47 8 chr1 21805400 21805528 -220858825 + L2 LINE L2 3180 3312 -1 2013 117 13 17 chr1 21806119 21806418 -220857935 - AluSx SINE Alu -10 302 5 200 129 0 0 chr1 21806963 21806994 -220857359 + L2 LINE L2 3281 3311 -2 1548 192 11 0 chr1 21807115 21807391 -220856962 - AluJo SINE Alu -33 279 1 585 302 233 0 chr1 21807742 21807944 -220856409 + MIR SINE MIR 14 262 0 1744 171 44 0 chr1 21807957 21808255 -220856098 + AluJo SINE Alu 1 311 -1 1155 116 18 0 chr1 21808606 21808770 -220855583 - AluSq SINE Alu -13 300 134 1311 154 13 13 chr1 21809418 21809645 -220854708 - AluJo SINE Alu -11 301 75 2104 90 17 7 chr1 21809968 21810258 -220854095 - AluSc SINE Alu -16 293 1 2180 172 37 11 chr1 21810284 21810721 -220853632 - L1MB7 LINE L1 -16 6168 5721 698 238 66 6 chr1 21811170 21811371 -220852982 - MIR SINE MIR 0 262 48 4251 101 35 159 chr1 21811472 21812130 -220852223 - Tigger1 DNA MER2_type 0 2418 1771 821 172 8 0 chr1 21812130 21812258 -220852095 - FLAM_A SINE Alu -13 129 1 4251 101 35 159 chr1 21812258 21812425 -220851928 - Tigger1 DNA MER2_type -647 1771 1585 512 206 7 96 chr1 21812425 21812561 -220851792 - FLAM_A SINE Alu -15 127 4 241 91 0 0 chr1 21812561 21812594 -220851759 - Tigger1 DNA MER2_type -830 1588 1556 188 290 0 32 chr1 21812594 21812656 -220851697 - L2 LINE L2 -619 2695 2636 8207 128 78 35 chr1 21812743 21813205 -220851148 - Tigger1 DNA MER2_type -866 1552 1111 2301 105 0 0 chr1 21813205 21813501 -220850852 + AluSc SINE Alu 1 296 -13 8207 128 78 35 chr1 21813501 21814526 -220849827 - Tigger1 DNA MER2_type -1307 1111 1 271 333 95 66 chr1 21814737 21814935 -220849418 - L2 LINE L2 -583 2731 2540 2148 104 0 4 chr1 21814935 21815215 -220849138 + AluSg SINE Alu 1 279 -31 271 333 95 66 chr1 21815215 21815502 -220848851 - L2 LINE L2 -774 2540 2232 361 192 0 90 chr1 21815503 21815581 -220848772 - AluJ/FLAM SINE Alu -245 57 2 308 242 11 33 chr1 21815584 21815675 -220848678 + L1ME1 LINE L1 6064 6152 -14 184 300 0 0 chr1 21816088 21816138 -220848215 - L2 LINE L2 -1898 1416 1367 339 274 296 18 chr1 21816392 21816615 -220847738 + L2 LINE L2 3013 3297 -16 211 338 0 0 chr1 21816769 21816840 -220847513 + MIR SINE MIR 84 154 -108 839 170 0 0 chr1 21817119 21817278 -220847075 - L1MA4A LINE L1 -6 6297 6139 21 0 0 0 chr1 21818159 21818180 -220846173 + AT_rich Low_complexity Low_complexity 1 21 0 601 261 86 116 chr1 21818588 21819208 -220845145 + L1MEd LINE L1 224 824 -5295 2124 119 7 0 chr1 21819559 21819854 -220844499 - AluSx SINE Alu -15 297 1 2414 84 0 7 chr1 21820386 21820695 -220843658 + AluSg SINE Alu 1 307 -3 2110 130 0 3 chr1 21821407 21821715 -220842638 - AluSx SINE Alu -5 307 1 201 234 0 0 chr1 21823266 21823313 -220841040 + GA-rich Low_complexity Low_complexity 2 48 0 24 0 0 0 chr1 21824310 21824334 -220840019 + AT_rich Low_complexity Low_complexity 1 24 0 1086 172 6 0 chr1 21824571 21824745 -220839608 + FRAM SINE Alu 1 169 -7 618 14 0 0 chr1 21825534 21825605 -220838748 + (TG)n Simple_repeat Simple_repeat 2 72 0 1811 190 0 0 chr1 21825792 21826097 -220838256 + AluJo SINE Alu 1 305 -7 247 276 0 0 chr1 21826100 21826158 -220838195 + GA-rich Low_complexity Low_complexity 1 58 0 1189 174 116 27 chr1 21826310 21826596 -220837757 + AluJb SINE Alu 1 309 0 400 258 45 59 chr1 21826773 21827028 -220837325 + L1ME4a LINE L1 5624 5881 -240 1644 165 3 63 chr1 21827028 21827343 -220837010 - AluJb SINE Alu -15 297 2 207 0 0 0 chr1 21827348 21827371 -220836982 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 400 258 45 59 chr1 21827371 21827396 -220836957 + L1ME4a LINE L1 5885 5906 -215 326 264 23 78 chr1 21827611 21827740 -220836613 + MER20B DNA MER1_type 64 185 -598 674 265 23 50 chr1 21828130 21828349 -220836004 - MIR SINE MIR 0 262 50 1777 183 23 0 chr1 21828627 21828928 -220835425 + AluJb SINE Alu 1 308 -4 426 179 32 0 chr1 21829088 21829211 -220835142 + GA-rich Low_complexity Low_complexity 3 129 0 1744 112 0 0 chr1 21830381 21830614 -220833739 + AluSx SINE Alu 3 235 -77 195 42 0 0 chr1 21830623 21830647 -220833706 + (A)n Simple_repeat Simple_repeat 1 24 0 436 285 87 23 chr1 21831052 21831224 -220833129 - MIR SINE MIR -48 214 32 2162 117 3 7 chr1 21833808 21834107 -220830246 - AluSc SINE Alu -11 298 1 2174 102 0 3 chr1 21834220 21834539 -220829814 + AluSq SINE Alu 1 318 0 1185 215 68 31 chr1 21835372 21835697 -220828656 + MER58B DNA MER1_type 1 337 -4 2240 111 3 0 chr1 21835909 21836216 -220828137 + AluSg SINE Alu 1 308 -2 589 318 109 70 chr1 21836381 21836878 -220827475 - L2 LINE L2 -86 3227 2751 1881 181 0 10 chr1 21836878 21837187 -220827166 - AluJb SINE Alu -6 306 1 589 318 109 70 chr1 21837187 21837623 -220826730 - L2 LINE L2 -562 2751 2263 361 36 125 0 chr1 21837831 21837887 -220826466 + THE1C LTR MaLR 1 63 -312 671 308 130 14 chr1 21837954 21838246 -220826107 - L2 LINE L2 -557 2757 2432 180 0 0 0 chr1 21838270 21838290 -220826063 + (A)n Simple_repeat Simple_repeat 1 20 0 813 131 0 25 chr1 21838322 21838444 -220825909 - AluJ SINE Alu -12 300 182 733 125 27 0 chr1 21838444 21838556 -220825797 - AluJ SINE Alu -197 115 1 9664 186 37 16 chr1 21838883 21841308 -220823045 + L1P5 LINE L1 2825 5310 -841 378 0 0 0 chr1 21841308 21841350 -220823003 + (TAA)n Simple_repeat Simple_repeat 2 43 0 9664 186 37 16 chr1 21841350 21841799 -220822554 + L1P5 LINE L1 5310 5748 -403 2234 97 21 0 chr1 21841839 21842129 -220822224 + AluSq SINE Alu 3 298 -15 1595 172 34 24 chr1 21842136 21842433 -220821920 + AluJo SINE Alu 6 305 -7 29 0 0 25 chr1 21842737 21842755 -220821598 + AT_rich Low_complexity Low_complexity 1 18 -21 2308 87 0 0 chr1 21842755 21843041 -220821312 + AluSc SINE Alu 1 286 -23 29 0 0 25 chr1 21843041 21843062 -220821291 + AT_rich Low_complexity Low_complexity 18 39 0 660 204 0 0 chr1 21843130 21843272 -220821081 - L1MA4 LINE L1 -117 6183 6042 1211 135 86 37 chr1 21843803 21844047 -220820306 - Tigger2 DNA MER2_type 0 2718 2463 3408 139 39 88 chr1 21844106 21844572 -220819781 - Tigger2 DNA MER2_type -1964 754 341 840 169 0 0 chr1 21844572 21844702 -220819651 - FLAM_C SINE Alu -1 132 3 3408 139 39 88 chr1 21844702 21845028 -220819325 - Tigger2 DNA MER2_type -2377 341 1 1726 104 119 40 chr1 21845324 21845602 -220818751 + AluSx SINE Alu 1 300 -12 357 320 34 20 chr1 21845830 21845977 -220818376 - MIR3 SINE MIR -20 188 40 3271 157 43 5 chr1 21846271 21846875 -220817478 - MER73 LTR ERVL 0 644 18 343 274 44 0 chr1 21847031 21847144 -220817209 - MER94 DNA DNA -15 119 2 400 326 114 22 chr1 21847421 21847648 -220816705 - MIR SINE MIR -2 260 13 2173 105 7 7 chr1 21848128 21848422 -220815931 - AluSx SINE Alu -14 298 5 290 143 182 39 chr1 21848458 21848535 -220815818 + Charlie8 DNA MER1_type 294 381 -2036 543 185 139 0 chr1 21849618 21849726 -220814627 - FLAM_A SINE Alu -8 125 3 2068 121 0 23 chr1 21849827 21850132 -220814221 - AluSx SINE Alu -14 298 1 1013 216 135 17 chr1 21850300 21850596 -220813757 - MER2 DNA MER2_type -14 331 1 27 0 0 0 chr1 21850936 21850963 -220813390 + AT_rich Low_complexity Low_complexity 1 27 0 1008 133 32 0 chr1 21851618 21851776 -220812577 - AluSg/x SINE Alu -13 297 135 2198 103 3 0 chr1 21851983 21852273 -220812080 + AluY SINE Alu 1 291 -20 287 218 7 129 chr1 21852279 21852332 -220812021 + L1MC4a LINE L1 5780 5838 -1970 2346 83 0 0 chr1 21852332 21852622 -220811731 + AluSq SINE Alu 1 290 -23 287 218 7 129 chr1 21852622 21852715 -220811638 + L1MC4a LINE L1 5838 5908 -1900 1903 139 24 0 chr1 21853289 21853583 -220810770 - AluSx SINE Alu -11 301 1 2051 123 3 7 chr1 21854002 21854302 -220810051 + AluSx SINE Alu 1 299 -13 2626 276 114 24 chr1 21855538 21856549 -220807804 - L2 LINE L2 -731 2583 1482 204 67 0 0 chr1 21857021 21857051 -220807302 + (A)n Simple_repeat Simple_repeat 1 30 0 37 23 0 0 chr1 21857261 21857305 -220807048 + AT_rich Low_complexity Low_complexity 1 44 0 189 345 0 0 chr1 21857375 21857430 -220806923 + MIR SINE MIR 92 146 -62 976 244 0 31 chr1 21857445 21857674 -220806679 + MER58A DNA MER1_type 1 222 -2 1464 44 0 0 chr1 21857826 21858006 -220806347 - L1PA4 LINE L1 0 6155 5976 823 132 22 15 chr1 21858406 21858542 -220805811 + AluSq/x SINE Alu 1 137 -175 2318 95 0 0 chr1 21858842 21859137 -220805216 - AluSx SINE Alu -17 295 1 21 89 0 0 chr1 21859137 21859193 -220805160 + AT_rich Low_complexity Low_complexity 1 56 0 693 190 9 0 chr1 21859364 21859480 -220804873 - FLAM_C SINE Alu -16 117 1 2175 121 0 7 chr1 21859489 21859796 -220804557 - AluSc SINE Alu -4 305 1 2145 127 0 10 chr1 21860139 21860447 -220803906 + AluSg SINE Alu 1 305 -5 413 158 24 24 chr1 21860487 21860569 -220803784 - AluJ/FRAM SINE Alu -11 301 220 212 198 0 70 chr1 21860681 21860767 -220803586 + (CCCCG)n Simple_repeat Simple_repeat 4 83 0 315 188 25 25 chr1 21861171 21861251 -220803102 + AluJ/FRAM SINE Alu 220 299 -3 1662 155 17 14 chr1 21861308 21861598 -220802755 - AluSq SINE Alu -22 291 1 774 130 0 89 chr1 21861604 21861750 -220802603 - FLAM_C SINE Alu 0 133 1 1809 158 0 3 chr1 21861982 21862266 -220802087 + AluSx SINE Alu 26 308 -4 707 203 8 8 chr1 21862275 21862408 -220801945 + AluJo/FLAM SINE Alu 1 133 -179 2595 47 0 0 chr1 21862411 21862712 -220801641 + AluY SINE Alu 1 301 -10 544 112 0 11 chr1 21862818 21862907 -220801446 - L1M3 LINE L1 -751 5583 5496 1689 138 50 0 chr1 21862907 21863167 -220801186 - AluSx SINE Alu -16 296 24 2268 229 30 23 chr1 21863189 21863935 -220800418 - L1M3 LINE L1 -884 5262 4512 359 301 128 19 chr1 21864129 21864285 -220800068 - L2 LINE L2 -349 2965 2793 208 365 46 57 chr1 21864626 21864908 -220799445 + L2 LINE L2 2812 3090 -182 5548 79 51 43 chr1 21864942 21865876 -220798477 - SVA Other Other 0 1386 445 4711 64 29 16 chr1 21866112 21866797 -220797556 - SVA Other Other -688 698 5 2297 119 0 0 chr1 21868181 21868492 -220795861 + AluSx SINE Alu 1 311 -1 1519 198 0 8 chr1 21868753 21869021 -220795332 + AluSx SINE Alu 1 266 -46 1311 181 26 0 chr1 21869667 21869899 -220794454 + Tigger7 DNA MER2_type 30 267 -2220 392 200 53 21 chr1 21869910 21870005 -220794348 + Tigger7 DNA MER2_type 2390 2487 0 521 259 111 0 chr1 21870626 21870788 -220793565 - L2 LINE L2 -40 3273 3094 2306 59 45 0 chr1 21870967 21871257 -220793096 - AluY SINE Alu -8 303 1 733 209 0 8 chr1 21871274 21871408 -220792945 + FLAM_A SINE Alu 1 133 0 259 32 0 0 chr1 21872779 21872810 -220791543 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 1672 196 3 7 chr1 21872810 21873095 -220791258 - AluJo SINE Alu -28 284 1 1825 88 4 4 chr1 21873395 21873659 -220790694 - AluSc SINE Alu 0 303 40 21 36 0 0 chr1 21873743 21873771 -220790582 + AT_rich Low_complexity Low_complexity 1 28 0 994 150 0 25 chr1 21874111 21874271 -220790082 + FRAM SINE Alu 1 153 -23 239 75 175 0 chr1 21874273 21874313 -220790040 - L1MB2 LINE L1 0 6171 6125 1825 174 92 36 chr1 21874324 21874715 -220789638 - MSTB1 LTR MaLR -19 413 1 2028 83 72 7 chr1 21874724 21875001 -220789352 - AluSg SINE Alu -15 295 1 558 223 0 8 chr1 21875001 21875055 -220789298 - L1MB3 LINE L1 -41 6142 6089 1470 199 20 43 chr1 21875055 21875357 -220788996 + AluJo SINE Alu 1 295 -17 558 223 0 8 chr1 21875357 21875432 -220788921 - L1MB3 LINE L1 -94 6089 6014 895 182 56 20 chr1 21875432 21875630 -220788723 - MER46A DNA MER2_type 0 236 32 2624 68 0 0 chr1 21875643 21875954 -220788399 - AluY SINE Alu 0 311 1 1958 160 9 9 chr1 21875959 21876303 -220788050 - L1MB3 LINE L1 -161 6022 5679 222 37 0 0 chr1 21876304 21876331 -220788022 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1908 108 7 42 chr1 21876339 21876625 -220787728 - AluSx SINE Alu -36 276 1 1509 176 99 0 chr1 21876625 21876897 -220787456 - AluJb SINE Alu -13 299 1 1004 212 43 48 chr1 21876902 21877508 -220786845 - L1M4c LINE L1 -4066 2318 1622 2163 100 13 10 chr1 21877959 21878268 -220786085 + AluSq SINE Alu 1 310 -3 2771 17 0 0 chr1 21878641 21878942 -220785411 + AluYb8 SINE Alu 1 301 -17 2342 107 0 0 chr1 21878976 21879286 -220785067 + AluSg SINE Alu 1 310 0 1246 170 81 35 chr1 21879548 21879860 -220784493 + MER33 DNA MER1_type 1 310 -14 1684 176 19 7 chr1 21879869 21880176 -220784177 - AluJo SINE Alu -1 311 1 1755 150 16 39 chr1 21880263 21880569 -220783784 + AluJo SINE Alu 1 299 -13 730 239 0 50 chr1 21881272 21881431 -220782922 + FRAM SINE Alu 1 143 -33 180 0 0 0 chr1 21881431 21881451 -220782902 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1218 179 113 44 chr1 21881543 21881817 -220782536 - AluJb SINE Alu -19 293 1 966 283 122 42 chr1 21882130 21882373 -220781980 + L2 LINE L2 2558 2780 -533 1765 145 54 85 chr1 21882373 21882760 -220781593 - THE1C LTR MaLR 0 375 1 966 283 122 42 chr1 21882760 21883211 -220781142 + L2 LINE L2 2780 3313 0 24 0 0 0 chr1 21883421 21883445 -220780908 + AT_rich Low_complexity Low_complexity 1 24 0 1586 193 14 14 chr1 21883594 21883890 -220780463 - AluJo SINE Alu -16 296 1 2204 94 24 0 chr1 21883898 21884185 -220780168 - AluSc SINE Alu -15 294 1 273 225 14 0 chr1 21884251 21884322 -220780031 + MER94 DNA DNA 1 72 -62 1058 159 24 0 chr1 21884393 21884563 -220779790 - FRAM SINE Alu -8 168 1 2310 109 3 0 chr1 21884855 21885159 -220779194 + AluSx SINE Alu 5 309 -3 704 134 0 0 chr1 21885535 21885632 -220778721 + AluJ/FLAM SINE Alu 2 98 -214 718 221 16 0 chr1 21885707 21885829 -220778524 + AluJb SINE Alu 2 125 -187 1806 47 5 0 chr1 21885832 21886044 -220778309 - AluY SINE Alu -17 294 82 2719 102 27 35 chr1 21886144 21886468 -220777885 + L1PA15 LINE L1 5746 6068 -97 2148 116 3 22 chr1 21886468 21886779 -220777574 + AluSx SINE Alu 1 305 -7 2719 102 27 35 chr1 21886779 21886858 -220777495 + L1PA15 LINE L1 6068 6146 -19 25 51 0 0 chr1 21886860 21886899 -220777454 + AT_rich Low_complexity Low_complexity 1 39 0 1690 175 3 18 chr1 21887108 21887394 -220776959 + AluJo SINE Alu 1 282 -30 755 355 139 16 chr1 21887423 21888184 -220776169 - L2 LINE L2 -445 2869 2015 227 233 50 0 chr1 21888404 21888464 -220775889 + MIR SINE MIR 190 252 -10 1838 162 23 7 chr1 21888497 21888799 -220775554 - AluSx SINE Alu -5 307 1 1080 173 0 0 chr1 21889003 21889171 -220775182 - AluJb SINE Alu -9 303 136 1550 176 19 42 chr1 21889197 21889504 -220774849 + AluJo SINE Alu 1 300 -12 2312 105 3 0 chr1 21889949 21890253 -220774100 + AluSx SINE Alu 1 305 -7 1780 165 7 7 chr1 21890261 21890552 -220773801 + AluSx SINE Alu 1 291 -21 810 187 0 0 chr1 21890690 21890813 -220773540 + FLAM_C SINE Alu 1 123 -10 1966 155 0 10 chr1 21891118 21891415 -220772938 - AluSx SINE Alu -18 294 1 2102 123 7 7 chr1 21891621 21891923 -220772430 - AluSx SINE Alu -10 302 1 480 85 0 0 chr1 21891923 21891982 -220772371 - AluSq/x SINE Alu -176 136 78 1244 153 5 10 chr1 21891982 21892191 -220772162 - AluSx SINE Alu -100 212 5 4049 40 39 2 chr1 21892312 21892830 -220771523 - L1P LINE L1 -1972 4174 3638 7755 43 2 5 chr1 21892830 21894448 -220769905 + L1PA5 LINE L1 4534 6149 -5 22 0 0 0 chr1 21894448 21894470 -220769883 + AT_rich Low_complexity Low_complexity 1 22 0 5496 40 0 5 chr1 21894483 21895144 -220769209 + L1PA5 LINE L1 5519 6176 0 360 258 19 0 chr1 21895199 21895296 -220769057 + FRAM/FAM SINE Alu 1 72 -103 601 164 43 0 chr1 21895415 21895531 -220768822 - MER46C DNA MER2_type -69 269 149 1477 175 12 4 chr1 21895700 21895951 -220768402 - AluJo SINE Alu -59 253 1 2199 172 57 2 chr1 21896454 21896860 -220767493 + L1PB4 LINE L1 5715 6142 -14 695 137 43 0 chr1 21897294 21897411 -220766942 + L1MB3 LINE L1 6059 6180 -3 1396 229 21 11 chr1 21897920 21898296 -220766057 + L1MC3 LINE L1 4758 5137 -1009 821 142 0 31 chr1 21898297 21898424 -220765929 + FLAM_C SINE Alu 1 123 -20 466 219 8 126 chr1 21898433 21898598 -220765755 + L1MC3 LINE L1 5121 5249 -897 1691 184 13 7 chr1 21898598 21898908 -220765445 + AluJb SINE Alu 1 312 0 466 219 8 126 chr1 21898908 21898988 -220765365 + L1MC3 LINE L1 5249 5337 -809 1509 186 52 4 chr1 21899006 21899275 -220765078 - AluJo SINE Alu -30 282 1 2090 219 24 91 chr1 21899277 21899851 -220764502 + L1MC3 LINE L1 5317 5864 -302 285 98 0 0 chr1 21899851 21899892 -220764461 + Alu SINE Alu 242 282 -20 2090 219 24 91 chr1 21899892 21900144 -220764209 + L1MC3 LINE L1 5864 6131 -35 1365 157 66 15 chr1 21900147 21900421 -220763932 + L1MB8 LINE L1 5584 5871 -307 553 246 7 21 chr1 21900828 21900970 -220763383 - MIR SINE MIR -90 172 33 1981 145 6 6 chr1 21902169 21902480 -220761873 + AluSx SINE Alu 1 311 -1 2146 106 20 0 chr1 21902897 21903190 -220761163 + AluSq SINE Alu 1 299 -14 2213 119 0 0 chr1 21904325 21904620 -220759733 + AluSx SINE Alu 1 295 -17 200 125 25 0 chr1 21904620 21904660 -220759693 + (TA)n Simple_repeat Simple_repeat 2 42 0 306 0 0 0 chr1 21904660 21904694 -220759659 + (CA)n Simple_repeat Simple_repeat 2 35 0 536 229 206 56 chr1 21904696 21904813 -220759540 - MIR SINE MIR -15 247 149 2028 121 0 43 chr1 21904813 21905135 -220759218 + AluJb SINE Alu 4 311 -1 536 229 206 56 chr1 21905135 21905231 -220759122 - MIR SINE MIR -113 149 2 1160 178 54 31 chr1 21905299 21905558 -220758795 + AluJo SINE Alu 29 293 -19 1137 150 62 5 chr1 21905648 21905841 -220758512 + MER2 DNA MER2_type 1 204 -141 1273 186 51 41 chr1 21905841 21906165 -220758188 - AluJb SINE Alu 0 312 1 525 151 0 0 chr1 21906199 21906272 -220758081 - AluJ/FLAM SINE Alu -238 74 2 544 293 90 5 chr1 21906272 21906460 -220757893 + L2 LINE L2 3109 3312 -1 2521 50 0 10 chr1 21906811 21907110 -220757243 + AluY SINE Alu 1 296 -15 2143 104 7 3 chr1 21907115 21907413 -220756940 + AluSq SINE Alu 1 299 -14 1360 259 132 84 chr1 21907725 21907920 -220756433 + L1MCc LINE L1 19 203 -6220 2244 95 7 7 chr1 21907920 21908216 -220756137 + AluSq SINE Alu 1 296 -17 1360 259 132 84 chr1 21908216 21908997 -220755356 + L1MCc LINE L1 203 945 -5478 646 149 75 0 chr1 21908997 21909104 -220755249 + AluJo/FLAM SINE Alu 2 116 -186 2143 111 0 14 chr1 21909104 21909401 -220754952 - AluSx SINE Alu -4 308 16 1360 259 132 84 chr1 21909401 21909540 -220754813 + L1MCc LINE L1 944 1328 -5095 521 259 126 66 chr1 21909808 21910072 -220754281 + L1MCc LINE L1 1369 1616 -5325 2126 131 0 23 chr1 21910072 21910378 -220753975 + AluSx SINE Alu 1 299 -13 521 259 126 66 chr1 21910378 21910821 -220753532 + L1MCc LINE L1 1616 2128 -4813 1594 167 39 39 chr1 21910821 21911132 -220753221 + AluJb SINE Alu 1 311 -1 521 259 126 66 chr1 21911132 21911185 -220753168 + L1MCc LINE L1 2128 2176 -4765 1562 185 34 20 chr1 21911569 21911861 -220752492 - AluJo SINE Alu -16 296 1 2095 136 0 3 chr1 21911904 21912205 -220752148 - AluSx SINE Alu -12 300 1 2364 84 0 7 chr1 21912347 21912646 -220751707 - AluSg SINE Alu -13 297 1 2073 142 3 3 chr1 21913508 21913819 -220750534 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr1 21915004 21915031 -220749322 + AT_rich Low_complexity Low_complexity 1 27 0 568 222 27 0 chr1 21915241 21915586 -220748767 + (CATA)n Simple_repeat Simple_repeat 1 354 0 2100 109 3 26 chr1 21917926 21918229 -220746124 - AluSg SINE Alu -14 296 1 243 88 0 0 chr1 21918323 21918357 -220745996 + (CA)n Simple_repeat Simple_repeat 2 35 0 2424 81 0 0 chr1 21918357 21918653 -220745700 - AluSx SINE Alu -16 296 1 1495 157 100 0 chr1 21918951 21919212 -220745141 + AluJb SINE Alu 1 287 -25 1457 124 171 19 chr1 21919506 21919763 -220744590 - AluSg1 SINE Alu -11 298 3 557 153 9 27 chr1 21921189 21921300 -220743053 - FAM SINE Alu -2 183 75 2146 124 3 0 chr1 21921333 21921640 -220742713 - AluSx SINE Alu -4 308 1 225 0 0 0 chr1 21922382 21922407 -220741946 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 21923227 21923248 -220741105 + AT_rich Low_complexity Low_complexity 1 21 0 2287 80 0 10 chr1 21923289 21923588 -220740765 - AluSg SINE Alu -14 296 1 1583 178 3 25 chr1 21924122 21924408 -220739945 + AluJo SINE Alu 3 282 -30 207 0 0 0 chr1 21924414 21924437 -220739916 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1466 170 180 23 chr1 21924551 21925049 -220739304 + Tigger1 DNA MER2_type 1 643 -1775 717 171 0 0 chr1 21925138 21925249 -220739104 - AluJb SINE Alu -187 125 15 3512 193 78 50 chr1 21925273 21925715 -220738638 + Charlie1 DNA MER1_type 1470 1898 -863 2124 54 68 0 chr1 21925715 21925993 -220738360 + AluSc SINE Alu 1 297 -12 3512 193 78 50 chr1 21925993 21926124 -220738229 + Charlie1 DNA MER1_type 1898 2024 -737 1730 175 3 7 chr1 21926124 21926409 -220737944 - AluJb SINE Alu -28 284 1 3512 193 78 50 chr1 21926409 21926789 -220737564 + Charlie1 DNA MER1_type 2024 2451 -310 389 138 38 25 chr1 21926868 21926948 -220737405 + Charlie1 DNA MER1_type 2444 2524 -237 875 162 78 0 chr1 21926975 21927129 -220737224 - FRAM SINE Alu 0 166 1 296 367 28 18 chr1 21928775 21928884 -220735469 - MIR SINE MIR -129 133 24 180 0 0 0 chr1 21931226 21931246 -220733107 + (GGA)n Simple_repeat Simple_repeat 3 22 0 228 271 186 0 chr1 21931684 21931786 -220732567 + MIR SINE MIR 21 151 -63 636 240 82 20 chr1 21932059 21932190 -220732163 + MER3 DNA MER1_type 2 150 -59 1901 174 0 0 chr1 21932190 21932494 -220731859 - AluSx SINE Alu -8 304 1 636 240 82 20 chr1 21932494 21932558 -220731795 + MER3 DNA MER1_type 150 209 0 4389 134 22 52 chr1 21932908 21933097 -220731256 - Tigger1 DNA MER2_type -1 2417 2224 2242 90 14 0 chr1 21933097 21933387 -220730966 - AluSg SINE Alu -16 294 1 4389 134 22 52 chr1 21933387 21933576 -220730777 - Tigger1 DNA MER2_type -194 2224 2031 1927 142 13 10 chr1 21933576 21933885 -220730468 - AluSx SINE Alu -2 310 1 4389 134 22 52 chr1 21933885 21934196 -220730157 - Tigger1 DNA MER2_type -387 2031 1754 2167 114 3 3 chr1 21934196 21934504 -220729849 - AluSq SINE Alu -5 308 1 4389 134 22 52 chr1 21934504 21934641 -220729712 - Tigger1 DNA MER2_type -664 1754 1614 532 234 9 0 chr1 21934750 21934857 -220729496 - FLAM_A SINE Alu -33 109 2 9069 124 47 31 chr1 21934857 21936417 -220727936 - Tigger1 DNA MER2_type -832 1586 1 544 342 88 53 chr1 21936925 21937006 -220727347 + L3 LINE CR1 611 688 -889 1723 58 22 18 chr1 21937006 21937232 -220727121 - AluY SINE Alu -2 309 83 544 342 88 53 chr1 21937232 21937966 -220726387 + L3 LINE CR1 688 1455 -122 22 0 0 0 chr1 21938240 21938262 -220726091 + AT_rich Low_complexity Low_complexity 1 22 0 330 255 57 28 chr1 21938781 21938887 -220725466 + MIR SINE MIR 95 203 -59 2363 78 0 3 chr1 21938892 21939187 -220725166 + AluSc SINE Alu 3 296 -13 855 147 81 33 chr1 21939213 21939424 -220724929 - L1M3 LINE L1 -709 5474 5254 347 74 0 0 chr1 21939425 21939479 -220724874 - Alu SINE Alu -1 301 248 24 32 0 0 chr1 21939956 21939987 -220724366 + AT_rich Low_complexity Low_complexity 1 31 0 1823 158 3 35 chr1 21939988 21940298 -220724055 - AluJb SINE Alu -12 300 1 2121 124 3 3 chr1 21940724 21941031 -220723322 - AluSx SINE Alu -5 307 1 543 319 93 20 chr1 21941498 21941702 -220722651 - MIR SINE MIR -26 236 18 295 234 117 54 chr1 21942068 21942187 -220722166 - MIR SINE MIR -41 167 53 34 42 0 0 chr1 21942340 21942388 -220721965 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 21943270 21943292 -220721061 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr1 21943572 21943609 -220720744 + (CA)n Simple_repeat Simple_repeat 2 38 0 198 91 0 0 chr1 21945953 21945986 -220718367 + (A)n Simple_repeat Simple_repeat 1 33 0 1418 166 0 65 chr1 21948340 21948630 -220715723 - AluJo SINE Alu -5 307 37 709 106 9 26 chr1 21948642 21948755 -220715598 - FLAM_A SINE Alu -12 130 20 255 294 141 25 chr1 21949770 21949933 -220714420 + MIR SINE MIR 20 201 -61 243 296 12 12 chr1 21949951 21950032 -220714321 - MIR SINE MIR -108 154 74 285 214 0 0 chr1 21952261 21952317 -220712036 - MIR SINE MIR -10 252 197 2210 120 0 0 chr1 21952476 21952768 -220711585 + AluSq SINE Alu 3 294 -19 198 0 0 0 chr1 21952874 21952896 -220711457 + (A)n Simple_repeat Simple_repeat 1 22 0 312 227 145 82 chr1 21952910 21953117 -220711236 + L1ME4a LINE L1 5724 5943 -178 27 0 0 0 chr1 21953285 21953312 -220711041 + AT_rich Low_complexity Low_complexity 1 27 0 802 179 80 0 chr1 21953364 21953515 -220710838 + AluJb SINE Alu 136 298 -14 22 35 0 0 chr1 21953566 21953595 -220710758 + AT_rich Low_complexity Low_complexity 1 29 0 2279 99 0 10 chr1 21953695 21953998 -220710355 - AluSx SINE Alu -12 300 1 232 299 34 20 chr1 21954213 21954360 -220709993 + L1P LINE L1 4904 5052 -1094 1755 185 3 3 chr1 21954537 21954839 -220709514 - AluJo SINE Alu -10 302 1 2260 82 0 0 chr1 21955031 21955311 -220709042 - AluSg SINE Alu -30 280 1 696 208 7 7 chr1 21955347 21955501 -220708852 + MER3 DNA MER1_type 12 165 -44 1826 124 99 3 chr1 21955523 21955806 -220708547 + AluSg SINE Alu 1 310 0 482 175 103 0 chr1 21955827 21955953 -220708400 - L1MB2 LINE L1 -16 6155 6017 233 188 24 94 chr1 21955959 21956044 -220708309 + MER3 DNA MER1_type 131 209 0 370 288 69 31 chr1 21956272 21956432 -220707921 + Charlie1a DNA MER1_type 5 170 -1285 1531 164 16 52 chr1 21956649 21957016 -220707337 + L1MB8 LINE L1 5825 6178 0 630 199 93 33 chr1 21957192 21957343 -220707010 + FRAM SINE Alu 1 160 -6 354 109 0 0 chr1 21957802 21957848 -220706505 - Alu SINE Alu -257 46 1 1873 148 36 7 chr1 21957896 21958199 -220706154 + AluSq SINE Alu 1 312 -1 264 212 0 0 chr1 21958201 21958267 -220706086 + GA-rich Low_complexity Low_complexity 3 68 0 260 342 52 19 chr1 21958269 21958424 -220705929 - L3 LINE CR1 -969 608 449 1033 110 0 0 chr1 21958779 21958915 -220705438 + AluSq/x SINE Alu 1 136 -176 27 0 0 0 chr1 21960021 21960048 -220704305 + AT_rich Low_complexity Low_complexity 1 27 0 2147 135 0 0 chr1 21960172 21960468 -220703885 + AluSx SINE Alu 1 296 -16 398 326 105 11 chr1 21960546 21960736 -220703617 + MIR SINE MIR 24 231 -31 2986 110 32 6 chr1 21960972 21961445 -220702908 + L1P4 LINE L1 5280 5764 -401 1517 189 56 56 chr1 21961555 21961931 -220702422 - L1MD2 LINE L1 -69 6290 5915 650 224 128 5 chr1 21961952 21962148 -220702205 + Charlie1a DNA MER1_type 332 551 -904 245 163 0 0 chr1 21962196 21962239 -220702114 + Charlie1a DNA MER1_type 1408 1450 -5 2672 204 29 0 chr1 21962862 21963387 -220700966 + L1PBa LINE L1 1 540 -6323 25 0 0 0 chr1 21963452 21963477 -220700876 + AT_rich Low_complexity Low_complexity 1 25 0 320 315 24 24 chr1 21963830 21963957 -220700396 + L1M4c LINE L1 540 666 -5718 2227 107 3 0 chr1 21964053 21964343 -220700010 + AluSx SINE Alu 1 291 -21 1955 140 3 6 chr1 21964476 21964791 -220699562 - L1PA15 LINE L1 0 6165 5852 2053 134 3 3 chr1 21964801 21965100 -220699253 - AluSx SINE Alu -13 299 1 1405 206 57 73 chr1 21965101 21965660 -220698693 + L1M4c LINE L1 908 1457 -4927 430 187 168 0 chr1 21965660 21965767 -220698586 + FLAM_C SINE Alu 1 125 -18 520 217 89 19 chr1 21965767 21965924 -220698429 + L1M4c LINE L1 1435 1602 -4782 1896 193 52 27 chr1 21966035 21966516 -220697837 + L1MB3 LINE L1 5684 6176 -7 218 175 0 25 chr1 21966541 21966581 -220697772 - MIR SINE MIR -87 121 83 532 245 60 20 chr1 21967102 21967253 -220697100 - AluSp SINE Alu -20 293 137 1705 148 44 7 chr1 21967255 21967526 -220696827 - AluSx SINE Alu -31 281 1 713 183 8 0 chr1 21967693 21967819 -220696534 + FLAM_C SINE Alu 1 127 -6 1576 159 9 59 chr1 21968052 21968372 -220695981 - AluJo SINE Alu -2 310 7 2077 144 19 27 chr1 21968424 21968791 -220695562 + THE1B LTR MaLR 1 364 0 273 157 45 56 chr1 21968835 21968924 -220695429 - MER33 DNA MER1_type -14 349 262 * 515 210 9 20 chr1 21968912 21969039 -220695314 - MER33 DNA MER1_type -250 74 1 2052 134 7 0 chr1 21969108 21969421 -220694932 + AluSx SINE Alu 1 315 0 326 336 49 16 chr1 21971728 21971850 -220692503 - MIR SINE MIR -90 172 47 1246 185 53 69 chr1 21972010 21972313 -220692040 + AluJo SINE Alu 1 298 -14 2609 180 71 92 chr1 21973482 21974656 -220689697 + MER52C LTR ERV1 51 1276 -2 1967 158 3 3 chr1 21974799 21975102 -220689251 + AluJb SINE Alu 1 303 -9 196 188 141 16 chr1 21975533 21975597 -220688756 - L2 LINE L2 -5 3308 3237 338 186 395 16 chr1 21976088 21976212 -220688141 + MER5B DNA MER1_type 8 178 0 1615 214 17 30 chr1 21977101 21977682 -220686671 + L1M4 LINE L1 4590 5124 -1022 615 193 42 78 chr1 21977693 21977885 -220686468 + AluSc SINE Alu 112 296 -13 955 145 16 5 chr1 21977888 21978142 -220686211 + L1M4 LINE L1 5170 5425 -743 2018 197 91 13 chr1 21978204 21978786 -220685567 + MER21B LTR ERV1 2 655 -208 2461 144 46 5 chr1 21978904 21979321 -220685032 + MER57B LTR ERV1 1 434 0 901 153 0 0 chr1 21979456 21979587 -220684766 - FLAM_C SINE Alu -12 131 1 1713 183 33 0 chr1 21980175 21980476 -220683877 - AluJb SINE Alu -1 311 1 1521 150 88 11 chr1 21981808 21982082 -220682271 + AluJb SINE Alu 1 295 -17 1336 166 0 14 chr1 21982836 21983047 -220681306 - AluJb SINE Alu -2 310 103 1388 194 51 17 chr1 21983050 21983343 -220681010 + AluJo SINE Alu 5 307 -5 444 300 62 48 chr1 21985149 21985376 -220678977 - MIR SINE MIR -22 240 11 2098 178 112 20 chr1 21985427 21985973 -220678380 + LTR48 LTR ERV1 192 787 0 1266 260 109 25 chr1 21986491 21987021 -220677332 + LTR41 LTR ERVL 3 577 -196 709 299 15 15 chr1 21987047 21987311 -220677042 + ERVL LTR ERVL 2980 3243 -2521 408 241 241 10 chr1 21987367 21987562 -220676791 + LTR41 LTR ERVL 423 662 -111 1392 162 0 45 chr1 21987866 21988113 -220676240 + AluJo SINE Alu 71 306 -6 517 247 202 4 chr1 21989452 21989699 -220674654 + L1ME1 LINE L1 5866 6161 -5 1430 194 13 61 chr1 21989768 21990078 -220674275 + AluJo SINE Alu 1 295 -17 322 274 18 9 chr1 21990090 21990203 -220674150 + (CATATA)n Simple_repeat Simple_repeat 6 119 0 380 198 87 8 chr1 21990604 21990730 -220673623 - Charlie4 DNA MER1_type -32 1929 1794 5859 61 24 32 chr1 21990742 21991617 -220672736 + SVA Other Other 1 868 -518 1926 127 28 10 chr1 21992290 21992581 -220671772 + AluSq SINE Alu 1 296 -17 1905 129 0 0 chr1 21992748 21993038 -220671315 + AluSx SINE Alu 21 310 0 1072 199 79 14 chr1 21993664 21993880 -220670473 + AluJo SINE Alu 1 230 -82 2005 127 0 56 chr1 21995283 21995606 -220668747 - AluSx SINE Alu -7 305 1 3215 48 5 11 chr1 21995738 21996176 -220668177 - L1P LINE L1 -1594 4552 4118 6649 56 19 42 chr1 21996383 21997359 -220666994 + SVA Other Other 433 1386 0 25 51 0 0 chr1 21998285 21998324 -220666029 + AT_rich Low_complexity Low_complexity 1 39 0 1230 260 55 11 chr1 21999886 22000321 -220664032 + L1ME3A LINE L1 5496 5949 -221 258 314 6 51 chr1 22001107 22001282 -220663071 - Charlie8 DNA MER1_type -2154 263 97 958 185 6 12 chr1 22001397 22001570 -220662783 - AluJ SINE Alu -12 300 129 830 188 0 0 chr1 22001608 22001741 -220662612 - AluJ SINE Alu -169 133 1 21 36 0 0 chr1 22001846 22001874 -220662479 + AT_rich Low_complexity Low_complexity 1 28 0 1673 167 21 14 chr1 22002834 22003122 -220661231 - AluJb SINE Alu -22 290 1 389 309 8 0 chr1 22003124 22003250 -220661103 + MLT1E1 LTR MaLR 4 130 -524 680 222 43 101 chr1 22003314 22003502 -220660851 - L2 LINE L2 -503 2811 2640 746 223 60 6 chr1 22003502 22003668 -220660685 + FAM SINE Alu 1 175 0 680 222 43 101 chr1 22003668 22003736 -220660617 - L2 LINE L2 -674 2640 2570 610 268 55 11 chr1 22003788 22003971 -220660382 - L2 LINE L2 0 3313 3123 945 175 85 0 chr1 22004026 22004237 -220660116 - MER46A DNA MER2_type -7 229 1 383 315 9 0 chr1 22004297 22004405 -220659948 - L2 LINE L2 -976 2338 2230 2304 121 3 0 chr1 22004614 22004919 -220659434 - AluSx SINE Alu -6 306 1 1894 182 0 3 chr1 22004930 22005232 -220659121 - AluJo SINE Alu -11 301 1 225 210 0 16 chr1 22005426 22005474 -220658879 + (TA)n Simple_repeat Simple_repeat 2 50 -12 2205 107 3 3 chr1 22005474 22005763 -220658590 - AluSx SINE Alu -23 289 1 225 210 0 16 chr1 22005763 22005776 -220658577 + (TA)n Simple_repeat Simple_repeat 50 62 0 997 182 0 12 chr1 22005924 22006094 -220658259 - AluJb SINE Alu -12 300 133 1901 117 0 60 chr1 22006600 22006900 -220657453 - AluSx SINE Alu -30 282 1 783 205 70 12 chr1 22008261 22008432 -220655921 + AluJo SINE Alu 112 292 -20 320 317 191 0 chr1 22008472 22008655 -220655698 + MIR SINE MIR 22 239 -23 881 167 172 11 chr1 22008849 22009029 -220655324 + AluJb SINE Alu 83 291 -21 214 178 0 0 chr1 22009167 22009212 -220655141 + A-rich Low_complexity Low_complexity 1 45 0 2258 134 0 0 chr1 22009992 22010305 -220654048 - AluSq SINE Alu 0 313 1 464 108 0 0 chr1 22010741 22010815 -220653538 + Alu SINE Alu 236 309 -3 2208 94 19 23 chr1 22010965 22011272 -220653081 + AluSx SINE Alu 3 308 -4 384 247 0 0 chr1 22011360 22011445 -220652908 + MIR SINE MIR 168 252 -10 712 261 53 0 chr1 22011452 22011640 -220652713 + MIR SINE MIR 44 241 -21 1122 196 54 0 chr1 22011667 22011891 -220652462 - MER46A DNA MER2_type 0 236 1 201 304 0 25 chr1 22012331 22012410 -220651943 + L2 LINE L2 3191 3267 -5 1684 186 0 35 chr1 22013993 22014304 -220650049 + AluJo SINE Alu 1 300 -12 1927 113 92 0 chr1 22014422 22014704 -220649649 + AluSg SINE Alu 1 308 -2 714 173 0 16 chr1 22015122 22015249 -220649104 + FLAM_C SINE Alu 1 125 -18 2219 82 4 0 chr1 22015258 22015572 -220648781 - AluY SINE Alu 0 315 1 25 0 0 0 chr1 22015572 22015597 -220648756 + AT_rich Low_complexity Low_complexity 1 25 0 693 228 73 56 chr1 22015752 22015984 -220648369 - MIR SINE MIR -19 243 8 208 290 50 30 chr1 22016048 22016148 -220648205 + L2 LINE L2 2716 2817 -497 509 154 0 0 chr1 22016186 22016277 -220648076 - MER3 DNA MER1_type -80 129 86 231 331 37 59 chr1 22016316 22016452 -220647901 + L2 LINE L2 2909 3041 -272 637 184 0 18 chr1 22016679 22016793 -220647560 - AluJb SINE Alu -16 296 185 21 0 0 0 chr1 22016943 22016964 -220647389 + AT_rich Low_complexity Low_complexity 1 21 0 741 213 31 76 chr1 22017010 22017235 -220647118 - MER20 DNA MER1_type -4 215 1 24 0 0 0 chr1 22017398 22017422 -220646931 + AT_rich Low_complexity Low_complexity 1 24 0 804 155 14 27 chr1 22017661 22017809 -220646544 + AluJo SINE Alu 3 148 -164 3058 206 17 31 chr1 22017815 22018157 -220646196 + L1MA4A LINE L1 2617 2962 -3886 1993 128 0 25 chr1 22018157 22018478 -220645875 + AluSq SINE Alu 1 313 0 3058 206 17 31 chr1 22018478 22019282 -220645071 + L1MA4A LINE L1 2962 3744 -3104 402 134 12 12 chr1 22019314 22019396 -220644957 + AluS SINE Alu 225 306 -3 3831 170 38 78 chr1 22019396 22020019 -220644334 + L1MA4A LINE L1 5412 6059 -946 1628 168 11 14 chr1 22020019 22020304 -220644049 + AluJo SINE Alu 23 306 -6 3831 170 38 78 chr1 22020304 22020478 -220643875 + L1MA4A LINE L1 6059 6238 -767 2344 88 3 3 chr1 22020478 22020786 -220643567 + AluSp SINE Alu 1 308 -5 3831 170 38 78 chr1 22020786 22021582 -220642771 + L1MA4A LINE L1 6238 6956 -49 2181 128 0 0 chr1 22021582 22021880 -220642473 + AluSx SINE Alu 1 298 -14 3831 170 38 78 chr1 22021880 22021918 -220642435 + L1MA4A LINE L1 6956 6994 -11 355 332 71 33 chr1 22021999 22022210 -220642143 + L3 LINE CR1 494 712 -865 1709 189 0 50 chr1 22022265 22022583 -220641770 + AluJo SINE Alu 1 302 -10 1406 154 0 69 chr1 22022603 22022751 -220641602 + AluJo SINE Alu 1 127 -185 2136 99 7 0 chr1 22022751 22023044 -220641309 + AluSx SINE Alu 3 297 -15 1406 154 0 69 chr1 22023044 22023142 -220641211 + AluJo SINE Alu 127 230 -82 309 119 0 0 chr1 22223145 22223187 -220441166 - Alu SINE Alu -258 45 4 932 150 4 78 chr1 22223333 22223573 -220440780 - AluJb SINE Alu -15 297 2 1437 158 26 0 chr1 22223575 22223809 -220440544 + AluJo SINE Alu 55 294 -18 734 102 39 8 chr1 22224461 22224588 -220439765 + AluSp/q SINE Alu 180 310 -3 249 273 86 40 chr1 22224647 22224845 -220439508 + L1ME LINE L1 5706 5912 -209 2619 226 69 3 chr1 22226024 22226629 -220437724 - MER82 DNA MER2_type -8 645 1 230 304 214 0 chr1 22226708 22226820 -220437533 + MIR3 SINE MIR 37 172 -36 21 0 0 0 chr1 22226893 22226914 -220437439 + AT_rich Low_complexity Low_complexity 1 21 0 40 37 0 0 chr1 22227614 22227668 -220436685 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr1 22229579 22229602 -220434751 + (CA)n Simple_repeat Simple_repeat 1 23 0 304 279 50 9 chr1 22229606 22229771 -220434582 - MLT1L LTR MaLR -60 528 353 251 274 0 0 chr1 22230380 22230442 -220433911 + MIR SINE MIR 82 143 -65 1371 186 39 81 chr1 22230731 22231113 -220433240 + MLT1A2 LTR MaLR 8 373 -1 1098 240 102 0 chr1 22231120 22231424 -220432929 - MER89 LTR ERV1 -24 535 201 447 266 70 0 chr1 22231894 22232022 -220432331 + MIR SINE MIR 123 259 -3 195 42 0 0 chr1 22232183 22232207 -220432146 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 1972 156 81 36 chr1 22233138 22233229 -220431124 - L1MB7 LINE L1 -314 5870 5785 1348 203 7 32 chr1 22233229 22233418 -220430935 - AluJo SINE Alu -10 302 123 2325 59 3 0 chr1 22233418 22233707 -220430646 + AluY SINE Alu 1 290 -21 1348 203 7 32 chr1 22233707 22233827 -220430526 - AluJo SINE Alu -189 123 1 1686 173 0 3 chr1 22233830 22234150 -220430203 - AluJo SINE Alu 0 319 1 1972 156 81 36 chr1 22234150 22234471 -220429882 - L1MB7 LINE L1 -400 5784 5434 1045 259 90 32 chr1 22234473 22234979 -220429374 - L2 LINE L2 -8 3305 2772 2254 105 0 3 chr1 22234980 22235293 -220429060 + AluSx SINE Alu 1 312 0 1660 149 22 7 chr1 22235407 22235718 -220428635 - AluJb SINE Alu 0 320 6 246 162 0 0 chr1 22235722 22235756 -220428597 + MIR3 SINE MIR 122 155 -53 427 316 0 9 chr1 22235756 22235870 -220428483 + MER5B DNA MER1_type 1 113 -65 296 248 97 62 chr1 22236699 22236844 -220427509 + L2 LINE L2 2989 3138 -175 2342 90 7 0 chr1 22236862 22237172 -220427181 - AluSq SINE Alu -1 312 1 1583 136 47 36 chr1 22237294 22237429 -220426924 - AluJo SINE Alu -30 282 150 1666 151 0 89 chr1 22237429 22237766 -220426587 - AluJb SINE Alu -3 309 3 1583 136 47 36 chr1 22237766 22237909 -220426444 - AluJo SINE Alu -162 150 1 991 203 15 71 chr1 22237919 22238050 -220426303 - L1MB8 LINE L1 -11 6167 6057 2078 77 13 37 chr1 22238050 22238348 -220426005 + AluY SINE Alu 13 303 -8 991 203 15 71 chr1 22238348 22238482 -220425871 - L1MB8 LINE L1 -121 6057 5917 1301 173 36 28 chr1 22238482 22238613 -220425740 + AluJb SINE Alu 1 136 -176 2490 36 7 0 chr1 22238613 22238914 -220425439 + AluY SINE Alu 1 303 -8 1301 173 36 28 chr1 22238914 22239030 -220425323 + AluJb SINE Alu 136 250 -62 254 243 142 46 chr1 22239235 22239474 -220424879 + L1ME LINE L1 5596 5857 -264 1903 113 13 13 chr1 22239475 22239784 -220424569 + AluSx SINE Alu 2 310 -2 244 241 19 0 chr1 22239835 22239889 -220424464 + L1ME4a LINE L1 5606 5660 -699 1143 144 77 0 chr1 22239941 22240135 -220424218 + AluJo SINE Alu 75 283 -29 21 0 0 0 chr1 22240439 22240460 -220423893 + AT_rich Low_complexity Low_complexity 1 21 0 2235 90 3 0 chr1 22240460 22240760 -220423593 + AluY SINE Alu 1 301 -10 365 303 35 35 chr1 22240930 22240946 -220423407 + L1ME4a LINE L1 5969 5984 -137 2243 106 0 0 chr1 22240946 22241257 -220423096 + AluSq SINE Alu 1 311 -2 365 303 35 35 chr1 22241257 22241382 -220422971 + L1ME4a LINE L1 5983 6110 -11 222 37 0 0 chr1 22242030 22242057 -220422296 + (CA)n Simple_repeat Simple_repeat 1 27 0 1953 121 3 33 chr1 22243031 22243338 -220421015 - AluSx SINE Alu -14 298 1 227 276 13 13 chr1 22243380 22243451 -220420902 + L2 LINE L2 2466 2537 -773 189 0 0 0 chr1 22243451 22243472 -220420881 + (CCCCAG)n Simple_repeat Simple_repeat 2 22 0 2395 56 0 16 chr1 22243566 22243869 -220420484 - AluY SINE Alu -13 298 1 2517 143 2 27 chr1 22243869 22244281 -220420072 - L1MC1 LINE L1 -482 5851 5450 297 0 0 0 chr1 22244363 22244396 -220419957 + (TA)n Simple_repeat Simple_repeat 2 34 0 2326 108 22 40 chr1 22244620 22244991 -220419362 - THE1B LTR MaLR 0 364 1 391 266 0 21 chr1 22245389 22245483 -220418870 + L1MC4 LINE L1 6615 6706 -1336 1808 155 0 14 chr1 22245483 22245780 -220418573 + AluJo SINE Alu 1 293 -19 304 218 35 58 chr1 22245780 22245795 -220418558 - L1MC3 LINE L1 -1209 6576 6562 2333 73 0 13 chr1 22245808 22246121 -220418232 - AluY SINE Alu -2 309 1 1514 173 20 10 chr1 22246383 22246684 -220417669 + AluJo SINE Alu 1 304 -8 294 206 58 62 chr1 22246704 22246774 -220417579 - L1P LINE L1 -2383 3763 3694 252 0 0 0 chr1 22246774 22246802 -220417551 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 1753 147 0 3 chr1 22246806 22247091 -220417262 - AluJb SINE Alu -28 284 1 294 206 58 62 chr1 22247091 22247181 -220417172 - L1P LINE L1 -2455 3691 3606 195 382 0 45 chr1 22247410 22247520 -220416833 + MIR3 SINE MIR 104 208 0 1440 137 9 0 chr1 22247574 22247793 -220416560 + AluJb SINE Alu 83 303 -9 947 116 0 58 chr1 22248391 22248563 -220415790 - L1PA5 LINE L1 0 6154 5993 1146 92 0 12 chr1 22248568 22248732 -220415621 - L1PA5 LINE L1 0 6154 5993 922 180 0 17 chr1 22248732 22248910 -220415443 - FRAM SINE Alu -2 174 1 1799 111 11 4 chr1 22249359 22249630 -220414723 - AluSq SINE Alu -40 273 1 469 204 43 0 chr1 22249667 22249760 -220414593 - MIR SINE MIR -77 185 89 1482 127 79 0 chr1 22249806 22250035 -220414318 - AluJo SINE Alu -32 280 34 2236 110 0 0 chr1 22250290 22250598 -220413755 - AluSx SINE Alu -4 308 1 255 322 11 0 chr1 22250603 22250690 -220413663 - MIR SINE MIR -60 148 61 195 343 56 35 chr1 22250795 22250938 -220413415 - MIR SINE MIR -71 191 46 505 230 22 7 chr1 22250971 22251106 -220413247 - L2 LINE L2 -7 3306 3170 210 262 98 16 chr1 22251137 22251198 -220413155 + L3 LINE CR1 574 639 -938 180 111 0 0 chr1 22251430 22251457 -220412896 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 2006 121 0 7 chr1 22251593 22251890 -220412463 - AluSx SINE Alu -17 295 1 2367 158 51 32 chr1 22251902 22251976 -220412377 - L1MB8 LINE L1 -1 6177 6106 2428 58 0 10 chr1 22251976 22252287 -220412066 - AluY SINE Alu -3 308 1 2367 158 51 32 chr1 22252287 22252706 -220411647 - L1MB8 LINE L1 -72 6106 5675 1639 159 15 0 chr1 22252714 22252985 -220411368 - AluJo SINE Alu -21 291 17 1459 159 60 19 chr1 22252991 22253011 -220411342 - L1MB7 LINE L1 -1 6183 6165 2225 98 0 0 chr1 22253011 22253306 -220411047 + AluSq SINE Alu 1 295 -18 1459 159 60 19 chr1 22253306 22253599 -220410754 - L1MB7 LINE L1 -19 6165 5857 917 140 7 0 chr1 22253714 22253857 -220410496 + AluSx SINE Alu 58 201 -111 8380 118 8 2 chr1 22253857 22255002 -220409351 + THE1A-int LTR MaLR 429 1580 0 2426 102 11 8 chr1 22255002 22255354 -220408999 + THE1A LTR MaLR 1 353 -2 711 184 9 0 chr1 22255355 22255469 -220408884 - AluJb SINE Alu -197 115 1 271 236 34 45 chr1 22255469 22255558 -220408795 + L1MC4 LINE L1 7815 7902 -140 2446 56 0 13 chr1 22255683 22255988 -220408365 + AluSp SINE Alu 1 301 -12 379 306 68 38 chr1 22255997 22256232 -220408121 + L1ME LINE L1 4428 4669 -1477 632 151 118 34 chr1 22256240 22256359 -220407994 + FLAM_C SINE Alu 3 131 -2 325 77 0 0 chr1 22256404 22256443 -220407910 - MER4A LTR ERV1 -72 592 554 413 330 46 29 chr1 22256488 22257088 -220407265 + L1ME LINE L1 4824 5432 -749 285 307 0 0 chr1 22257139 22257214 -220407139 + L1ME LINE L1 5442 5516 -650 2169 81 3 0 chr1 22258792 22259108 -220405245 - AluSx SINE Alu 0 317 1 6964 129 60 11 chr1 22259109 22259698 -220404655 - MER41-int LTR ERV1 -2603 3343 2784 2188 92 7 0 chr1 22259698 22260004 -220404349 - AluY SINE Alu -3 308 1 6964 129 60 11 chr1 22260004 22260043 -220404310 - MER41-int LTR ERV1 -3162 2784 2748 2095 125 0 19 chr1 22260043 22260356 -220403997 - AluSx SINE Alu -5 307 1 6964 129 60 11 chr1 22260356 22260866 -220403487 - MER41-int LTR ERV1 -3198 2748 2149 2066 114 0 10 chr1 22260867 22261174 -220403179 + AluSg SINE Alu 1 304 -6 189 0 0 0 chr1 22261323 22261344 -220403009 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1946 139 7 0 chr1 22261349 22261652 -220402701 - AluSp SINE Alu -8 305 1 2330 193 50 76 chr1 22261652 22261839 -220402514 + L1M4 LINE L1 4319 4509 -1637 1428 174 18 18 chr1 22261839 22262121 -220402232 - AluJb SINE Alu -30 282 1 2330 193 50 76 chr1 22262121 22262339 -220402014 + L1M4 LINE L1 4509 4731 -1415 2160 99 0 0 chr1 22262339 22262641 -220401712 - AluSc SINE Alu -7 302 1 2330 193 50 76 chr1 22262641 22262908 -220401445 + L1M4 LINE L1 4731 4975 -1171 873 218 0 29 chr1 22262908 22263082 -220401271 + AluJb SINE Alu 125 293 -19 2082 141 8 45 chr1 22263082 22263427 -220400926 + L1M4 LINE L1 4985 5319 -852 1880 127 53 0 chr1 22263427 22263711 -220400642 + AluJb SINE Alu 1 299 -13 2082 141 8 45 chr1 22263711 22263818 -220400535 + L1M4 LINE L1 5319 5428 -743 292 77 295 0 chr1 22263864 22263933 -220400420 + L1M4 LINE L1 5403 5488 -690 1975 71 0 4 chr1 22264052 22264306 -220400047 - AluY SINE Alu -58 253 1 1246 144 36 0 chr1 22264306 22264500 -220399853 - AluSx SINE Alu -111 201 1 679 135 199 7 chr1 22264502 22264643 -220399710 + MLT1A1-int LTR MaLR 1563 1730 -5 1722 150 81 32 chr1 22264649 22264787 -220399566 + MLT1A1 LTR MaLR 3 133 -232 1696 184 3 3 chr1 22264787 22265076 -220399277 + AluJb SINE Alu 1 292 -20 207 0 0 0 chr1 22265076 22265099 -220399254 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1722 150 81 32 chr1 22265108 22265315 -220399038 + MLT1A1 LTR MaLR 133 365 0 484 143 0 41 chr1 22265316 22265414 -220398939 + L1MB5 LINE L1 6081 6174 0 1693 148 10 96 chr1 22265415 22265813 -220398540 + L1MB8 LINE L1 5815 6178 0 3937 132 17 22 chr1 22265834 22266402 -220397951 - MER41B LTR ERV1 0 635 68 2220 82 0 0 chr1 22266402 22266723 -220397630 - AluSg SINE Alu 0 321 1 3937 132 17 22 chr1 22266723 22266791 -220397562 - MER41B LTR ERV1 -567 68 1 12419 94 27 11 chr1 22266794 22268070 -220396283 - MER41B-int LTR ERV1 -2 5944 4628 2081 117 7 3 chr1 22268070 22268369 -220395984 + AluSx SINE Alu 1 300 -12 12419 94 27 11 chr1 22268369 22268887 -220395466 - MER41B-int LTR ERV1 -1318 4628 4120 2111 141 35 28 chr1 22270460 22270837 -220393516 - MER41B-int LTR ERV1 -1808 4138 3582 1827 113 7 29 chr1 22270837 22271111 -220393242 + AluSx SINE Alu 1 268 -44 2111 141 35 28 chr1 22271111 22271201 -220393152 - MER41B-int LTR ERV1 -2364 3582 3494 4073 136 5 0 chr1 22271210 22271811 -220392542 - LTR10E LTR ERV1 -29 604 1 11702 148 51 62 chr1 22271811 22272017 -220392336 - MER41B-int LTR ERV1 -2447 3499 3292 2308 93 3 0 chr1 22272017 22272328 -220392025 - AluSx SINE Alu 0 312 1 11702 148 51 62 chr1 22272328 22272918 -220391435 - MER41B-int LTR ERV1 -2654 3292 2697 2431 68 3 0 chr1 22272918 22273225 -220391128 - AluY SINE Alu -3 308 1 11702 148 51 62 chr1 22273225 22273264 -220391089 - MER41B-int LTR ERV1 -3249 2697 2659 2118 125 0 19 chr1 22273264 22273577 -220390776 - AluSx SINE Alu -5 307 1 11702 148 51 62 chr1 22273577 22274088 -220390265 - MER41B-int LTR ERV1 -3287 2659 2144 2299 88 0 10 chr1 22274088 22274396 -220389957 + AluSg SINE Alu 1 305 -5 11702 148 51 62 chr1 22274396 22274952 -220389401 - MER41B-int LTR ERV1 -3802 2144 1583 2067 117 7 0 chr1 22274952 22275251 -220389102 - AluSx SINE Alu -11 301 1 11702 148 51 62 chr1 22275251 22275389 -220388964 - MER41B-int LTR ERV1 -4363 1583 1445 1832 136 38 79 chr1 22275389 22275780 -220388573 + THE1C LTR MaLR 1 375 0 11702 148 51 62 chr1 22275780 22276164 -220388189 - MER41B-int LTR ERV1 -4501 1445 1058 1967 78 95 0 chr1 22276164 22276448 -220387905 + AluY SINE Alu 1 311 0 11702 148 51 62 chr1 22276448 22277273 -220387080 - MER41B-int LTR ERV1 -4888 1058 327 843 149 0 8 chr1 22277273 22277407 -220386946 - FLAM_C SINE Alu 0 133 1 11702 148 51 62 chr1 22277407 22277731 -220386622 - MER41B-int LTR ERV1 -5619 327 1 2500 137 9 19 chr1 22277731 22277802 -220386551 - MER41B LTR ERV1 0 635 565 2136 106 0 10 chr1 22277802 22278105 -220386248 + AluSx SINE Alu 1 300 -12 2500 137 9 19 chr1 22278105 22278456 -220385897 - MER41B LTR ERV1 -70 565 217 189 0 0 0 chr1 22278456 22278477 -220385876 + (T)n Simple_repeat Simple_repeat 1 21 0 6507 63 23 41 chr1 22278496 22279468 -220384885 - SVA Other Other 0 1386 433 1227 92 33 64 chr1 22279481 22279946 -220384407 - SVA Other Other -520 866 519 4946 69 54 55 chr1 22279969 22280919 -220383434 - SVA Other Other -518 868 57 1028 31 0 8 chr1 22280919 22281048 -220383305 + (GGGAGA)n Simple_repeat Simple_repeat 1 128 0 1168 114 76 14 chr1 22281048 22281097 -220383256 - MER41B LTR ERV1 -411 224 179 1923 138 7 0 chr1 22281097 22281387 -220382966 - AluSx SINE Alu -20 292 1 1168 114 76 14 chr1 22281387 22281548 -220382805 - MER41B LTR ERV1 -456 179 1 411 208 83 101 chr1 22281551 22281676 -220382677 + L1MC4 LINE L1 7789 7912 -130 1051 164 5 59 chr1 22281676 22281754 -220382599 - MER3 DNA MER1_type 0 209 128 2082 77 7 14 chr1 22281754 22282041 -220382312 + AluY SINE Alu 23 307 -4 1051 164 5 59 chr1 22282041 22282181 -220382172 - MER3 DNA MER1_type -81 128 3 411 208 83 101 chr1 22282181 22282223 -220382130 + L1MC4 LINE L1 7912 7953 -89 2022 203 62 16 chr1 22282280 22282719 -220381634 + LTR2B LTR ERV1 32 490 0 3467 131 115 31 chr1 22282767 22283417 -220380936 + MER50 LTR ERV1 7 711 -23 513 288 54 16 chr1 22283695 22283879 -220380474 + MIR SINE MIR 29 219 -43 295 250 65 28 chr1 22284508 22284616 -220379737 + MIR SINE MIR 41 152 -110 365 213 147 88 chr1 22284663 22284708 -220379645 + MIR SINE MIR 119 160 -102 2140 90 0 0 chr1 22284708 22285013 -220379340 + AluSg SINE Alu 1 305 0 365 213 147 88 chr1 22285013 22285100 -220379253 + MIR SINE MIR 160 262 0 2084 133 0 0 chr1 22285109 22285409 -220378944 - AluSx SINE Alu -12 300 1 378 163 12 23 chr1 22285496 22285582 -220378771 + MER46C DNA MER2_type 30 114 -224 2376 60 3 16 chr1 22285606 22285921 -220378432 + AluY SINE Alu 1 311 0 481 227 0 0 chr1 22285981 22286078 -220378275 + MER46C DNA MER2_type 242 338 0 753 270 169 27 chr1 22286213 22286620 -220377733 - LTR67 LTR ERVL -9 548 84 514 279 91 32 chr1 22286849 22287068 -220377285 - MIR SINE MIR -24 238 7 533 244 7 7 chr1 22287068 22287203 -220377150 + MER117 DNA MER1_type 5 139 -58 871 245 61 0 chr1 22287204 22287482 -220376871 + L1M4 LINE L1 2649 2943 -3203 981 170 0 0 chr1 22287482 22287647 -220376706 + FAM SINE Alu 10 174 -11 451 214 19 105 chr1 22287647 22287716 -220376637 + L1M4 LINE L1 2967 3040 -3106 1928 83 4 15 chr1 22287716 22287981 -220376372 + AluY SINE Alu 34 295 -16 451 214 19 105 chr1 22287981 22288121 -220376232 + L1M4 LINE L1 3040 3158 -2988 606 254 75 28 chr1 22288370 22288583 -220375770 - MLT1K LTR MaLR 0 588 366 245 222 37 26 chr1 22288669 22288747 -220375606 - MLT1H LTR MaLR -267 173 57 1419 177 55 50 chr1 22289678 22289722 -220374631 - MLT1A1 LTR MaLR -2 363 321 2555 105 5 30 chr1 22289722 22290095 -220374258 + THE1B LTR MaLR 1 364 0 1419 177 55 50 chr1 22290095 22290411 -220373942 - MLT1A1 LTR MaLR -44 321 1 208 275 88 38 chr1 22290514 22290594 -220373759 + MIR SINE MIR 30 113 -95 291 305 62 23 chr1 22290702 22290830 -220373523 + MIR SINE MIR 50 182 -80 2091 108 0 0 chr1 22291803 22292091 -220372262 - AluSx SINE Alu -13 299 12 612 277 89 57 chr1 22292158 22292494 -220371859 - L2 LINE L2 -1 3312 2966 244 209 0 0 chr1 22292562 22292623 -220371730 - MER106A DNA MER1_type -76 160 118 2251 85 0 0 chr1 22292737 22293031 -220371322 + AluSx SINE Alu 1 294 -18 277 268 232 72 chr1 22293118 22293424 -220370929 + L2 LINE L2 2306 2660 -654 2283 95 3 0 chr1 22293698 22294004 -220370349 + AluSc SINE Alu 1 307 -2 719 144 0 25 chr1 22295310 22295428 -220368925 - FLAM_C SINE Alu -27 116 2 1961 99 61 0 chr1 22295453 22295746 -220368607 - AluY SINE Alu 0 311 1 339 338 124 0 chr1 22295752 22295897 -220368456 - MIR SINE MIR -53 209 47 195 366 65 0 chr1 22296095 22296188 -220368165 + L2 LINE L2 3194 3292 -21 2070 82 4 0 chr1 22296189 22296459 -220367894 - AluSx SINE Alu -18 294 24 184 294 0 0 chr1 22296771 22296822 -220367531 + L2 LINE L2 3211 3261 -52 327 222 42 0 chr1 22296865 22296937 -220367416 + L2 LINE L2 3239 3313 0 2362 63 0 10 chr1 22297070 22297371 -220366982 - AluY SINE Alu -13 298 1 204 306 14 0 chr1 22297374 22297446 -220366907 - MIR SINE MIR -14 248 176 465 207 59 30 chr1 22297866 22298001 -220366352 - MIR SINE MIR -28 234 96 2260 93 0 0 chr1 22298001 22298292 -220366061 + AluSx SINE Alu 1 291 -21 2058 98 20 0 chr1 22298296 22298592 -220365761 + AluSp SINE Alu 3 304 -9 1193 80 0 0 chr1 22298592 22298754 -220365599 + AluY SINE Alu 133 294 -17 232 143 95 0 chr1 22298756 22298798 -220365555 - MER3 DNA MER1_type -117 92 47 194 186 23 0 chr1 22299930 22299973 -220364380 + L2 LINE L2 3014 3057 -215 303 261 27 0 chr1 22300505 22300600 -220363753 - MIR SINE MIR -76 132 32 494 237 64 17 chr1 22300684 22300899 -220363454 + MIR SINE MIR 18 244 -18 312 248 0 41 chr1 22301227 22301330 -220363023 + MIR SINE MIR 73 152 -56 1921 123 24 3 chr1 22301376 22301669 -220362684 - AluSx SINE Alu -13 299 1 2077 121 10 3 chr1 22302160 22302466 -220361887 + AluSx SINE Alu 1 308 -4 692 197 23 15 chr1 22302475 22302607 -220361746 + FLAM_A SINE Alu 1 133 0 1047 311 33 19 chr1 22302617 22303102 -220361251 + L1MC4a LINE L1 5425 5916 -1892 270 0 0 0 chr1 22303120 22303150 -220361203 + (TG)n Simple_repeat Simple_repeat 2 31 0 2216 103 0 0 chr1 22303207 22303507 -220360846 + AluSx SINE Alu 1 300 -12 1640 153 0 4 chr1 22303684 22303938 -220360415 - AluJb SINE Alu -59 253 1 262 192 96 0 chr1 22303944 22304017 -220360336 + MER113 DNA MER1_type? 106 185 -336 250 286 24 0 chr1 22304066 22304150 -220360203 + MER113 DNA MER1_type? 381 466 -55 267 306 83 28 chr1 22304184 22304292 -220360061 + L2 LINE L2 3144 3257 -15 360 316 15 23 chr1 22304899 22305032 -220359321 + MIR3 SINE MIR 10 141 -67 1312 145 4 26 chr1 22305040 22305267 -220359086 + AluJo SINE Alu 12 233 -79 324 257 0 14 chr1 22305267 22305341 -220359012 - LTR28 LTR ERV1 0 1020 948 2583 218 137 33 chr1 22305391 22306206 -220358147 - LTR28 LTR ERV1 -69 951 3 512 117 0 0 chr1 22306207 22306284 -220358069 + AluJo SINE Alu 231 307 -5 1986 143 0 10 chr1 22306371 22306678 -220357675 - AluSx SINE Alu -8 304 1 2453 72 0 0 chr1 22306755 22307061 -220357292 - AluY SINE Alu -5 306 1 182 111 0 0 chr1 22307195 22307222 -220357131 - L2 LINE L2 -23 3290 3264 414 291 35 35 chr1 22307610 22307782 -220356571 + L2 LINE L2 2468 2639 -675 180 330 31 31 chr1 22307932 22308029 -220356324 + L2 LINE L2 2844 2940 -373 224 302 0 0 chr1 22308129 22308192 -220356161 + GA-rich Low_complexity Low_complexity 3 65 0 425 49 0 16 chr1 22308193 22308254 -220356099 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 229 371 57 0 chr1 22308738 22308843 -220355510 + L2 LINE L2 3198 3308 -5 197 271 0 0 chr1 22309326 22309374 -220354979 - L2 LINE L2 -1 3312 3265 531 262 43 0 chr1 22309730 22309871 -220354482 - L2 LINE L2 -797 2517 2371 863 130 15 130 chr1 22309922 22310122 -220354231 + AluJo SINE Alu 83 259 -53 423 248 35 9 chr1 22310353 22310466 -220353887 - MLT1I LTR MaLR -17 392 277 358 289 21 0 chr1 22310542 22310639 -220353714 - L2 LINE L2 0 3272 3174 1776 169 10 0 chr1 22310790 22311085 -220353268 + AluJb SINE Alu 1 298 -14 25 31 0 0 chr1 22311496 22311528 -220352825 + AT_rich Low_complexity Low_complexity 1 32 0 331 167 0 0 chr1 22311528 22311582 -220352771 - FLAM SINE Alu -2 131 78 276 292 9 26 chr1 22311622 22311735 -220352618 + L1ME LINE L1 4842 4952 -1194 1819 158 6 10 chr1 22311739 22312050 -220352303 + AluJb SINE Alu 1 310 -2 673 245 165 14 chr1 22312063 22312185 -220352168 + L1ME LINE L1 5047 5149 -1021 1760 174 3 7 chr1 22312185 22312489 -220351864 + AluJb SINE Alu 1 303 -9 673 245 165 14 chr1 22312489 22312857 -220351496 + L1ME LINE L1 5149 5595 -575 29 0 0 0 chr1 22316788 22316817 -220347536 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 22316952 22316982 -220347371 + GC_rich Low_complexity Low_complexity 1 30 0 538 288 11 80 chr1 22317266 22317540 -220346813 - MLT1-int LTR MaLR -107 1264 1010 1424 211 59 8 chr1 22317648 22318004 -220346349 - L1ME2 LINE L1 -263 5901 5528 220 229 66 16 chr1 22318977 22319038 -220345315 - MIR3 SINE MIR -7 201 138 589 262 83 38 chr1 22319613 22319899 -220344454 + LTR33 LTR ERVL 8 275 -248 401 395 9 9 chr1 22319937 22320160 -220344193 + HERV16 LTR ERVL 1228 1450 -3546 633 285 45 20 chr1 22320345 22320545 -220343808 + HERV16 LTR ERVL 1799 2003 -3761 351 270 0 0 chr1 22320566 22320640 -220343713 + LTR16B LTR ERVL 1 74 -390 1992 235 61 62 chr1 22321331 22321956 -220342397 - MLT1E3 LTR MaLR 0 624 1 371 387 38 8 chr1 22322094 22322360 -220341993 + L1ME1 LINE L1 182 455 -5941 297 241 36 45 chr1 22322797 22322909 -220341444 + L1ME1 LINE L1 2698 2808 -3407 21 71 0 0 chr1 22323031 22323073 -220341280 + AT_rich Low_complexity Low_complexity 1 42 0 1289 289 27 37 chr1 22323115 22323703 -220340650 + L1ME1 LINE L1 3919 4500 -1715 327 96 0 0 chr1 22323723 22323775 -220340578 + (TG)n Simple_repeat Simple_repeat 2 53 0 219 69 0 0 chr1 22323904 22323933 -220340420 + (TA)n Simple_repeat Simple_repeat 2 30 0 248 176 153 0 chr1 22323935 22324020 -220340333 + L1ME3 LINE L1 1995 2092 -4334 * 2216 268 72 15 chr1 22323998 22324356 -220339997 + L1ME1 LINE L1 5578 5914 -532 5048 72 11 19 chr1 22324356 22325021 -220339332 - PABL_A LTR ERV1 0 660 2 2216 268 72 15 chr1 22325021 22325478 -220338875 + L1ME1 LINE L1 5914 6440 -6 954 262 112 16 chr1 22325497 22325981 -220338372 + L1ME3 LINE L1 4609 5138 -1288 1878 63 0 4 chr1 22326789 22327026 -220337327 - L1PA6 LINE L1 -10 6144 5909 1374 284 97 46 chr1 22327055 22328029 -220336324 + L1ME3 LINE L1 5142 6065 -377 1943 118 38 14 chr1 22328029 22328318 -220336035 - AluSx SINE Alu -16 296 1 1374 284 97 46 chr1 22328318 22328373 -220335980 + L1ME3 LINE L1 6065 6116 -326 2523 170 5 2 chr1 22328373 22328803 -220335550 + MSTB1 LTR MaLR 1 431 -1 1374 284 97 46 chr1 22328803 22329007 -220335346 + L1ME3 LINE L1 6116 6441 -1 243 321 86 1 chr1 22329299 22329445 -220334908 + MIR SINE MIR 34 189 -73 3563 209 38 23 chr1 22330080 22331175 -220333178 + L1MB7 LINE L1 5041 6158 -26 1924 165 10 0 chr1 22331281 22331584 -220332769 + AluJo SINE Alu 1 306 -6 283 269 95 0 chr1 22331722 22331821 -220332532 + MIR SINE MIR 47 153 -67 213 316 96 7 chr1 22331848 22331984 -220332369 + MER5A DNA MER1_type 14 161 -28 248 246 15 15 chr1 22333565 22333630 -220330723 + MIR SINE MIR 82 146 -62 2216 87 7 23 chr1 22335998 22336307 -220328046 + AluSg SINE Alu 1 304 -6 909 86 0 0 chr1 22336307 22336424 -220327929 + AluSg/x SINE Alu 196 312 0 2348 95 0 0 chr1 22336432 22336726 -220327627 + AluSg1 SINE Alu 2 295 -14 2180 257 87 27 chr1 22336726 22337592 -220326761 - MLT-int LTR MaLR -165 1570 597 512 164 17 43 chr1 22337592 22337708 -220326645 - AluJb SINE Alu -10 302 190 4453 210 23 19 chr1 22337836 22338073 -220326280 - L1M4 LINE L1 -1895 4251 4016 1960 122 104 27 chr1 22338073 22338409 -220325944 + THE1B LTR MaLR 1 362 -2 4453 210 23 19 chr1 22338409 22339248 -220325105 - L1M4 LINE L1 -2130 4016 3171 182 235 367 0 chr1 22339249 22339347 -220325006 - MIR SINE MIR -128 134 1 308 296 47 41 chr1 22340339 22340508 -220323845 - MIR SINE MIR -43 219 50 437 281 188 10 chr1 22340791 22340983 -220323370 - MIR SINE MIR -34 228 3 354 222 0 0 chr1 22342429 22342501 -220321852 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 286 43 0 chr1 22343407 22343477 -220320876 + GA-rich Low_complexity Low_complexity 3 75 0 231 188 125 0 chr1 22344885 22344949 -220319404 + HAL1 LINE L1 2281 2352 -155 195 204 0 0 chr1 22345072 22345116 -220319237 + (TA)n Simple_repeat Simple_repeat 2 45 0 291 360 47 14 chr1 22345278 22345553 -220318800 + L1MC/D LINE L1 5490 5772 -387 183 295 116 8 chr1 22345639 22345768 -220318585 - MIR SINE MIR -16 246 104 180 0 0 0 chr1 22345898 22345918 -220318435 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 526 50 50 0 chr1 22346700 22346780 -220317573 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 33 66 0 0 chr1 22346798 22346859 -220317494 + AT_rich Low_complexity Low_complexity 1 61 0 1351 196 24 21 chr1 22346931 22347222 -220317131 + AluJo SINE Alu 14 305 -7 1196 273 81 29 chr1 22347297 22347711 -220316642 - L1 LINE L1 -1443 4703 4259 290 98 20 0 chr1 22347711 22347762 -220316591 + (TG)n Simple_repeat Simple_repeat 2 53 0 1196 273 81 29 chr1 22347762 22347831 -220316522 - L1 LINE L1 -1887 4259 4195 440 298 71 47 chr1 22347828 22348237 -220316116 - L1MCa LINE L1 -4701 1516 1098 * 269 244 101 8 chr1 22348479 22348598 -220315755 - L1MCa LINE L1 -5451 945 816 1600 154 0 19 chr1 22348598 22348864 -220315489 - AluSq SINE Alu -3 310 50 1090 266 28 8 chr1 22349167 22349555 -220314798 + L1M4 LINE L1 4859 5254 -892 365 344 21 10 chr1 22349558 22349750 -220314603 + MLT2D LTR ERVL 1 194 -220 270 189 68 0 chr1 22349775 22349849 -220314504 + MLT2B2 LTR ERVL 367 445 -70 515 321 43 45 chr1 22351470 22351912 -220312441 + L1MC4 LINE L1 7189 7629 -413 248 313 17 9 chr1 22351982 22352097 -220312256 - L1MC4 LINE L1 -467 7575 7460 282 132 0 0 chr1 22353247 22353300 -220311053 + (GA)n Simple_repeat Simple_repeat 1 53 0 2088 109 3 11 chr1 22353695 22353979 -220310374 + AluSx SINE Alu 1 282 -30 475 226 96 27 chr1 22354147 22354293 -220310060 + L1ME2 LINE L1 5988 6143 -21 284 188 43 0 chr1 22354327 22354396 -220309957 + L1MC4 LINE L1 7689 7760 -282 335 253 52 5 chr1 22354396 22354543 -220309810 + MLT2D LTR ERVL 39 194 -220 550 317 43 45 chr1 22356267 22356709 -220307644 + L1MC4 LINE L1 7189 7629 -413 269 304 17 9 chr1 22356780 22356895 -220307458 - L1MC4 LINE L1 -467 7575 7460 282 132 0 0 chr1 22358048 22358101 -220306252 + (GA)n Simple_repeat Simple_repeat 1 53 0 249 151 0 0 chr1 22359591 22359644 -220304709 + GA-rich Low_complexity Low_complexity 1 53 0 345 47 0 0 chr1 22361148 22361191 -220303162 + (CA)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr1 22361190 22361219 -220303134 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 16978 81 2 18 chr1 22363436 22365825 -220298528 + L1P LINE L1 875 3226 -2920 1748 158 0 0 chr1 22366545 22366818 -220297535 + AluSx SINE Alu 38 310 -2 298 232 42 42 chr1 22369953 22370048 -220294305 + L1MB5 LINE L1 6071 6165 -9 372 277 44 13 chr1 22370973 22371132 -220293221 - MIR SINE MIR -3 259 96 892 261 130 25 chr1 22371405 22371840 -220292513 + MLT1E2 LTR MaLR 137 654 0 282 29 0 0 chr1 22371905 22371940 -220292413 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1991 123 7 4 chr1 22372098 22372375 -220291978 + AluSq SINE Alu 9 313 0 244 0 0 0 chr1 22372375 22372402 -220291951 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 326 245 61 55 chr1 22372729 22372892 -220291461 + L1MB8 LINE L1 5990 6153 -25 974 294 79 5 chr1 22372902 22373296 -220291057 + L1MCa LINE L1 21 443 -5983 * 3242 208 56 12 chr1 22373294 22374772 -220289581 + L1MC2 LINE L1 4721 6341 -3 266 191 0 16 chr1 22375238 22375301 -220289052 + GA-rich Low_complexity Low_complexity 4 65 0 250 135 250 67 chr1 22375448 22375503 -220288850 + L1ME3A LINE L1 6037 6081 -89 1833 171 0 0 chr1 22375503 22375802 -220288551 - AluJb SINE Alu -11 301 3 250 135 250 67 chr1 22375802 22375850 -220288503 + L1ME3A LINE L1 6081 6159 -11 21 36 0 0 chr1 22376923 22376951 -220287402 + GC_rich Low_complexity Low_complexity 1 28 0 334 155 0 14 chr1 22377510 22377581 -220286772 + FLAM SINE Alu 63 132 -1 1655 134 0 0 chr1 22377714 22377960 -220286393 - AluSq SINE Alu -5 308 63 925 125 0 0 chr1 22377960 22378096 -220286257 - AluSg/x SINE Alu -40 272 137 395 255 159 13 chr1 22378476 22378633 -220285720 + MIR SINE MIR 76 255 -7 * 538 286 27 32 chr1 22378630 22378815 -220285538 - MIR SINE MIR 0 262 79 2108 103 3 3 chr1 22378816 22379107 -220285246 + AluSx SINE Alu 1 291 -21 2058 98 20 0 chr1 22379111 22379407 -220284946 + AluSp SINE Alu 3 304 -9 1193 80 0 0 chr1 22379407 22379569 -220284784 + AluY SINE Alu 133 294 -17 232 143 95 0 chr1 22379571 22379613 -220284740 - MER3 DNA MER1_type -117 92 47 194 186 23 0 chr1 22380745 22380788 -220283565 + L2 LINE L2 3014 3057 -215 303 261 27 0 chr1 22381322 22381417 -220282936 - MIR SINE MIR -76 132 32 2306 91 0 0 chr1 22381676 22381974 -220282379 - AluSg SINE Alu -12 298 1 282 56 0 0 chr1 22382033 22382069 -220282284 + (GA)n Simple_repeat Simple_repeat 2 37 0 2396 91 0 0 chr1 22382692 22383001 -220281352 + AluSx SINE Alu 1 309 -3 225 321 24 24 chr1 22383047 22383131 -220281222 - MIR3 SINE MIR -11 197 114 291 54 0 0 chr1 22384305 22384342 -220280011 + (TG)n Simple_repeat Simple_repeat 1 37 0 1184 163 64 0 chr1 22384426 22384628 -220279725 - MSTC LTR MaLR 0 428 214 977 161 0 0 chr1 22384628 22384783 -220279570 - FRAM SINE Alu -4 172 18 835 151 157 27 chr1 22384804 22384989 -220279364 - MSTC LTR MaLR -219 209 1 698 228 85 16 chr1 22385655 22385844 -220278509 - MIR SINE MIR -37 225 24 380 230 183 8 chr1 22386287 22386413 -220277940 + MIR SINE MIR 69 216 -46 351 317 92 7 chr1 22386510 22386652 -220277701 + L1ME4a LINE L1 5963 6116 -5 228 319 165 11 chr1 22386759 22386947 -220277406 + MLT1K LTR MaLR 82 298 -290 216 158 0 0 chr1 22386947 22386985 -220277368 + T-rich Low_complexity Low_complexity 1 38 0 314 267 35 79 chr1 22387027 22387142 -220277211 + MLT1K LTR MaLR 370 474 -114 1703 132 0 135 chr1 22387142 22387491 -220276862 - AluJb SINE Alu 0 302 1 314 267 35 79 chr1 22387491 22387577 -220276776 + MLT1K LTR MaLR 474 562 -26 2024 126 3 28 chr1 22388445 22388763 -220275590 + AluSx SINE Alu 1 310 -2 2082 112 26 0 chr1 22388943 22389246 -220275107 + AluSx SINE Alu 1 311 -1 252 59 0 0 chr1 22389414 22389448 -220274905 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 308 257 27 0 chr1 22389472 22389546 -220274807 + L1MB3 LINE L1 5881 5956 -227 204 344 62 47 chr1 22389555 22389683 -220274670 + L2 LINE L2 3139 3268 -4 257 336 82 14 chr1 22389790 22389998 -220274355 + L2 LINE L2 1931 2152 -1162 6972 54 9 16 chr1 22390157 22391631 -220272722 - SVA Other Other -875 1386 3 773 167 0 36 chr1 22391648 22391786 -220272567 - FLAM_A SINE Alu 0 133 1 561 267 56 95 chr1 22392409 22392584 -220271769 + L2 LINE L2 2967 3147 -166 198 71 0 0 chr1 22392584 22392612 -220271741 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2030 90 0 11 chr1 22392620 22392899 -220271454 - AluSc SINE Alu -33 276 1 1913 108 0 44 chr1 22392899 22393220 -220271133 - AluSx SINE Alu 0 308 1 561 267 56 95 chr1 22393220 22393392 -220270961 + L2 LINE L2 3152 3311 -2 235 188 62 0 chr1 22393557 22393605 -220270748 + MIR SINE MIR 114 164 -98 2199 116 3 0 chr1 22394052 22394362 -220269991 - AluSx SINE Alu -1 311 1 870 203 0 0 chr1 22394403 22394561 -220269792 - FRAM SINE Alu -18 158 1 246 254 151 38 chr1 22394630 22394804 -220269549 + MIR3 SINE MIR 8 191 -56 335 294 129 12 chr1 22394937 22395107 -220269246 - MIR3 SINE MIR -3 205 16 2002 138 0 7 chr1 22395412 22395716 -220268637 + AluJb SINE Alu 1 302 -10 409 166 137 68 chr1 22395971 22396176 -220268177 + MER113 DNA MER1_type? 3 221 -300 297 221 128 12 chr1 22396198 22396284 -220268069 + MIR3 SINE MIR 59 154 -54 260 149 43 0 chr1 22396412 22396459 -220267894 + L3 LINE CR1 1421 1469 -108 249 331 139 7 chr1 22396620 22396771 -220267582 - MIR SINE MIR -56 206 36 381 221 29 37 chr1 22397027 22397163 -220267190 + (CAGAGA)n Simple_repeat Simple_repeat 5 139 0 262 146 24 12 chr1 22397399 22397481 -220266872 + G-rich Low_complexity Low_complexity 6 88 0 206 254 16 0 chr1 22397651 22397714 -220266639 + G-rich Low_complexity Low_complexity 1 64 0 281 201 277 55 chr1 22398905 22399035 -220265318 - MIR SINE MIR -47 161 8 372 257 64 28 chr1 22399419 22399528 -220264825 - L2 LINE L2 -5 3308 3196 344 309 79 7 chr1 22399670 22399809 -220264544 + MIR SINE MIR 77 225 -37 262 301 9 35 chr1 22400202 22400315 -220264038 - MIR3 SINE MIR -94 114 5 392 251 161 14 chr1 22400602 22400756 -220263597 + MIR3 SINE MIR 21 194 -35 337 237 161 0 chr1 22400900 22400993 -220263360 + MIR SINE MIR 16 123 -85 258 32 0 0 chr1 22401414 22401445 -220262908 + (TTA)n Simple_repeat Simple_repeat 2 32 0 502 281 51 36 chr1 22401487 22401683 -220262670 - MIR3 SINE MIR -4 204 6 411 189 122 0 chr1 22401797 22401887 -220262466 + MIR SINE MIR 40 140 -68 666 243 103 35 chr1 22402067 22402326 -220262027 + Charlie8 DNA MER1_type 64 1417 -1000 220 224 0 60 chr1 22403179 22403246 -220261107 - MIR3 SINE MIR -36 172 110 550 237 119 0 chr1 22403599 22403717 -220260636 - FLAM_C SINE Alu -10 133 2 2058 112 0 0 chr1 22403756 22404043 -220260310 - AluSx SINE Alu -25 287 1 248 51 0 26 chr1 22404187 22404226 -220260127 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1900 128 0 29 chr1 22404228 22404534 -220259819 - AluJo SINE Alu -15 297 1 449 252 43 0 chr1 22404797 22404912 -220259441 - MIR SINE MIR -31 231 112 1848 157 57 11 chr1 22405217 22405567 -220258786 - MER47A DNA MER2_type 0 366 1 385 267 227 0 chr1 22405567 22405739 -220258614 - MIR SINE MIR -5 257 47 333 187 13 0 chr1 22405999 22406074 -220258279 + MIR SINE MIR 46 121 -141 535 267 106 6 chr1 22406140 22406301 -220258052 - MER117 DNA MER1_type -3 194 18 400 302 219 6 chr1 22406660 22406829 -220257524 - MIR SINE MIR -9 253 49 2031 140 0 0 chr1 22407975 22408275 -220256078 + AluSx SINE Alu 1 300 -12 217 259 19 0 chr1 22408496 22408550 -220255803 + MIR SINE MIR 75 129 -79 1708 146 9 25 chr1 22408575 22408891 -220255462 - AluJo SINE Alu 0 312 2 1944 102 61 0 chr1 22408916 22409209 -220255144 - AluY SINE Alu 0 311 1 339 338 124 0 chr1 22409215 22409360 -220254993 - MIR SINE MIR -53 209 47 195 366 65 0 chr1 22409558 22409651 -220254702 + L2 LINE L2 3194 3292 -21 2070 82 4 0 chr1 22409652 22409922 -220254431 - AluSx SINE Alu -18 294 24 184 294 0 0 chr1 22410232 22410283 -220254070 + L2 LINE L2 3211 3261 -52 327 222 42 0 chr1 22410326 22410398 -220253955 + L2 LINE L2 3239 3313 0 2371 63 0 10 chr1 22410531 22410833 -220253520 - AluY SINE Alu -12 299 1 204 306 14 0 chr1 22410836 22410908 -220253445 - MIR SINE MIR -14 248 176 522 228 38 99 chr1 22411328 22411463 -220252890 - MIR SINE MIR -28 234 115 2005 113 0 41 chr1 22411463 22411782 -220252571 + AluSx SINE Alu 1 306 -6 522 228 38 99 chr1 22411782 22411857 -220252496 - MIR SINE MIR -147 115 37 266 222 44 56 chr1 22412221 22412311 -220252042 - MIR SINE MIR -141 121 33 2427 73 0 0 chr1 22412459 22412762 -220251591 - AluSg SINE Alu -7 303 1 1080 166 6 0 chr1 22412800 22412969 -220251384 + FAM SINE Alu 1 170 -5 332 282 8 34 chr1 22412986 22413103 -220251250 - MIR SINE MIR -137 125 12 231 306 14 0 chr1 22414054 22414126 -220250227 - L2 LINE L2 0 3272 3200 2196 90 0 0 chr1 22414178 22414467 -220249886 + AluSq SINE Alu 14 302 -11 454 125 62 0 chr1 22414600 22414680 -220249673 - AluSg/x SINE Alu -9 303 219 1931 109 0 0 chr1 22414781 22415048 -220249305 - AluSx SINE Alu -45 267 1 255 282 92 44 chr1 22415070 22415364 -220248989 - L1M4 LINE L1 -3161 2985 2678 2269 70 3 0 chr1 22415617 22415939 -220248414 - AluSp SINE Alu 0 323 1 1876 164 3 0 chr1 22416157 22416456 -220247897 - AluSq SINE Alu -13 300 1 1854 139 10 3 chr1 22416618 22416912 -220247441 - AluJb SINE Alu 0 312 17 1218 190 164 23 chr1 22416953 22417216 -220247137 - AluSg SINE Alu 0 300 1 1965 136 3 16 chr1 22417459 22417775 -220246578 - AluJb SINE Alu 0 312 1 1646 139 7 18 chr1 22418478 22418648 -220245705 - AluJo SINE Alu -9 303 136 2202 87 19 16 chr1 22418648 22418958 -220245395 - AluSx SINE Alu -1 311 1 1646 139 7 18 chr1 22418958 22419068 -220245285 - AluJo SINE Alu -176 136 26 2191 111 3 0 chr1 22419885 22420191 -220244162 - AluSx SINE Alu -5 307 1 596 274 36 18 chr1 22420551 22420719 -220243634 + MIR3 SINE MIR 36 206 -2 667 228 18 24 chr1 22420832 22420999 -220243354 + MIR SINE MIR 7 172 -90 247 304 128 10 chr1 22421162 22421264 -220243089 - MIR SINE MIR -72 190 77 2190 115 0 10 chr1 22421341 22421655 -220242698 + AluSq SINE Alu 3 313 0 1606 134 36 0 chr1 22421721 22421974 -220242379 - AluJb SINE Alu -48 264 3 508 304 209 0 chr1 22422581 22422811 -220241542 + L2 LINE L2 3033 3310 -3 1681 169 14 10 chr1 22423034 22423329 -220241024 + AluJo SINE Alu 1 296 -16 386 292 28 26 chr1 22423506 22423677 -220240676 + MIR3 SINE MIR 8 179 -63 387 240 112 27 chr1 22424103 22424295 -220240058 - MLT1K LTR MaLR -7 589 397 438 237 89 30 chr1 22424380 22424515 -220239838 - MLT1K LTR MaLR -444 144 2 2413 76 0 0 chr1 22424593 22424897 -220239456 - AluY SINE Alu -7 304 1 223 292 52 65 chr1 22425386 22425541 -220238812 + MIR SINE MIR 1 153 -72 383 241 271 8 chr1 22425634 22425767 -220238586 + MIR SINE MIR 74 241 -21 210 310 70 54 chr1 22425775 22425904 -220238449 - MIR SINE MIR -5 257 127 205 226 57 0 chr1 22425936 22425989 -220238364 + MIR SINE MIR 81 136 -72 281 298 115 0 chr1 22426558 22426699 -220237654 + MIR SINE MIR 42 206 -56 1121 175 5 0 chr1 22426882 22427088 -220237265 + MIR SINE MIR 56 262 0 218 308 0 0 chr1 22427278 22427343 -220237010 + MIR SINE MIR 56 120 -142 2416 74 0 6 chr1 22427346 22427657 -220236696 - AluY SINE Alu -2 309 1 347 248 156 9 chr1 22428130 22428239 -220236114 + MIR SINE MIR 31 155 -107 394 304 43 0 chr1 22429040 22429155 -220235198 - MIR SINE MIR -142 120 1 251 219 203 0 chr1 22430141 22430205 -220234148 + MIR3 SINE MIR 94 170 -38 2036 97 14 0 chr1 22430261 22430539 -220233814 + AluSx SINE Alu 1 282 -30 1873 142 48 7 chr1 22430571 22430860 -220233493 + AluJo SINE Alu 1 301 -11 198 321 0 0 chr1 22430860 22430913 -220233440 - MER5A DNA MER1_type -56 133 81 1008 111 0 0 chr1 22431163 22431307 -220233046 + AluSp/q SINE Alu 158 301 -12 300 164 45 0 chr1 22431307 22431374 -220232979 - L1ME3 LINE L1 -118 6044 5975 193 299 60 15 chr1 22431783 22431850 -220232503 + MIR SINE MIR 114 183 -79 220 318 57 0 chr1 22431927 22432015 -220232338 - MIR SINE MIR -78 130 38 679 33 11 0 chr1 22432058 22432148 -220232205 + MER57-int LTR ERV1 7057 7147 -390 519 178 16 47 chr1 22432149 22432162 -220232191 + LTR54B LTR ERV1 5 17 -481 1997 124 7 10 chr1 22432162 22432460 -220231893 + AluSx SINE Alu 1 297 -15 519 178 16 47 chr1 22432460 22432575 -220231778 + LTR54B LTR ERV1 17 129 -369 1265 124 58 35 chr1 22432577 22432834 -220231519 + MER57A-int LTR ERV1 7275 7537 0 1564 149 107 104 chr1 22432834 22432980 -220231373 + MER57A LTR ERV1 1 145 -258 2304 109 0 0 chr1 22432980 22433292 -220231061 - AluSx SINE Alu 0 312 1 1564 149 107 104 chr1 22433292 22433503 -220230850 + MER57A LTR ERV1 145 363 -40 1985 104 0 0 chr1 22433503 22433795 -220230558 - AluSc SINE Alu 0 312 21 1564 149 107 104 chr1 22433795 22433837 -220230516 + MER57A LTR ERV1 363 403 0 274 260 31 52 chr1 22434139 22434235 -220230118 + MIR SINE MIR 96 189 -73 180 170 151 0 chr1 22434460 22434513 -220229840 + MIR SINE MIR 111 171 -91 * 195 204 68 0 chr1 22434497 22434541 -220229812 + L2 LINE L2 3246 3292 -21 198 282 0 0 chr1 22434704 22434743 -220229610 + L2 LINE L2 3211 3249 -23 331 258 67 50 chr1 22434752 22434872 -220229481 + L2 LINE L2 3150 3271 -1 186 300 0 20 chr1 22435331 22435381 -220228972 - MIR SINE MIR -56 152 104 207 382 41 16 chr1 22436169 22436292 -220228061 - L2 LINE L2 -50 3222 3097 326 294 0 0 chr1 22436796 22436898 -220227455 - L1M4 LINE L1 -2098 4048 3947 700 282 31 31 chr1 22436903 22437130 -220227223 + L2 LINE L2 2155 2381 -933 2056 127 37 0 chr1 22437165 22437465 -220226888 - AluSx SINE Alu -1 311 1 326 47 0 0 chr1 22437536 22437579 -220226774 - tRNA-Gln-CAG tRNA tRNA -32 43 1 517 276 36 20 chr1 22437581 22437777 -220226576 + L1M4 LINE L1 4415 4613 -1533 409 247 62 45 chr1 22437762 22437940 -220226413 + L1ME1 LINE L1 5940 6120 -46 * 403 243 63 0 chr1 22438007 22438118 -220226235 + MIR SINE MIR 36 153 -55 958 245 141 35 chr1 22438263 22438688 -220225665 - L1ME3A LINE L1 -9 6161 5692 225 318 47 23 chr1 22438701 22438830 -220225523 - L1ME3A LINE L1 -546 5624 5493 352 282 77 83 chr1 22439200 22439356 -220224997 - L1ME4a LINE L1 -3 6118 5964 2426 55 7 0 chr1 22439425 22439734 -220224619 - AluY SINE Alu 0 311 1 23 0 0 0 chr1 22439854 22439877 -220224476 + AT_rich Low_complexity Low_complexity 1 23 0 2325 76 17 0 chr1 22439884 22440185 -220224168 + AluSp SINE Alu 5 310 -3 22 100 0 9 chr1 22440219 22440265 -220224088 + AT_rich Low_complexity Low_complexity 1 46 -63 782 141 0 31 chr1 22440265 22440393 -220223960 - FLAM_A SINE Alu -9 124 1 22 100 0 9 chr1 22440393 22440456 -220223897 + AT_rich Low_complexity Low_complexity 46 109 0 522 184 28 78 chr1 22440702 22440919 -220223434 - L1ME4a LINE L1 -12 6109 5904 248 287 16 39 chr1 22440888 22441017 -220223336 - L1ME4a LINE L1 -1 6120 5995 * 446 174 230 56 chr1 22441193 22441354 -220222999 + MER5A DNA MER1_type 1 189 0 309 274 118 0 chr1 22441483 22441585 -220222768 + L2 LINE L2 3199 3312 -1 341 248 7 95 chr1 22441996 22442136 -220222217 - L1MC4 LINE L1 -1333 6989 1977 22 35 0 0 chr1 22442144 22442173 -220222180 + AT_rich Low_complexity Low_complexity 1 29 0 2432 72 0 0 chr1 22442173 22442477 -220221876 - AluY SINE Alu -6 305 2 1097 32 19 13 chr1 22442477 22442632 -220221721 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 2934 69 7 22 chr1 22442637 22443087 -220221266 - LTR7 LTR ERV1 -7 443 1 2094 100 0 27 chr1 22443088 22443387 -220220966 - AluSx SINE Alu -21 291 1 2376 66 0 10 chr1 22443437 22443742 -220220611 - AluY SINE Alu -9 302 1 1695 170 21 7 chr1 22444028 22444317 -220220036 + AluJo SINE Alu 1 293 -19 2230 108 0 0 chr1 22444326 22444623 -220219730 + AluSx SINE Alu 1 297 -15 338 289 106 56 chr1 22444675 22444855 -220219498 - L1MC4 LINE L1 -5919 497 309 365 326 167 0 chr1 22444861 22444993 -220219360 + MIR SINE MIR 102 255 -7 665 195 17 0 chr1 22445274 22445392 -220218961 - FRAM SINE Alu -46 130 11 674 247 75 34 chr1 22445411 22445736 -220218617 - L1ME3 LINE L1 0 6162 5823 186 365 0 14 chr1 22446579 22446653 -220217700 + MIR SINE MIR 119 191 -71 225 386 80 11 chr1 22447053 22447186 -220217167 - MIR SINE MIR -50 212 63 2099 123 3 3 chr1 22447186 22447487 -220216866 - AluSx SINE Alu -10 302 2 225 386 80 11 chr1 22447487 22447529 -220216824 - MIR SINE MIR -199 63 25 346 229 136 51 chr1 22447972 22448090 -220216263 + MIR SINE MIR 22 149 -113 240 293 13 60 chr1 22448911 22449061 -220215292 - L1ME3A LINE L1 -92 6078 5936 1351 146 130 0 chr1 22449072 22449325 -220215028 - AluJo SINE Alu -26 286 1 2210 108 7 0 chr1 22449335 22449632 -220214721 - AluSx SINE Alu -13 299 1 1251 126 19 0 chr1 22449705 22449919 -220214434 - Tigger1 DNA MER2_type -1 2417 2200 597 210 0 8 chr1 22449915 22450034 -220214319 - Tigger1 DNA MER2_type -2279 139 22 * 184 400 38 0 chr1 22450134 22450239 -220214114 - L2 LINE L2 -38 3234 3126 240 336 35 35 chr1 22450976 22451089 -220213264 + MIR3 SINE MIR 94 206 -2 225 218 77 51 chr1 22451162 22451240 -220213113 + MIR SINE MIR 104 183 -79 588 313 66 29 chr1 22452292 22452535 -220211818 + MIR SINE MIR 9 260 -2 379 324 60 33 chr1 22452961 22453143 -220211210 + MIR SINE MIR 26 212 -50 251 53 0 26 chr1 22453495 22453533 -220210820 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 2141 106 0 22 chr1 22453945 22454256 -220210097 - AluSx SINE Alu -8 304 1 1874 148 0 23 chr1 22454258 22454562 -220209791 - AluJb SINE Alu -15 297 1 368 302 103 0 chr1 22454567 22454683 -220209670 - MIR SINE MIR -120 142 15 468 289 94 20 chr1 22455289 22455490 -220208863 + MIR SINE MIR 47 262 0 241 237 51 0 chr1 22457138 22457197 -220207156 + MIR SINE MIR 110 171 -91 359 338 52 28 chr1 22457595 22457808 -220206545 + L2 LINE L2 2912 3129 -143 203 286 19 20 chr1 22458240 22458347 -220206006 - MIR SINE MIR -62 146 46 696 216 14 0 chr1 22458777 22458925 -220205428 + MIR SINE MIR 4 153 -109 266 130 0 0 chr1 22459000 22459046 -220205307 - MLT1F LTR MaLR 0 567 522 2345 83 0 6 chr1 22459056 22459369 -220204984 + AluY SINE Alu 1 311 0 1985 147 0 10 chr1 22459373 22459679 -220204674 + AluJo SINE Alu 1 303 -9 857 146 104 0 chr1 22459680 22459824 -220204529 + AluJo/FRAM SINE Alu 133 291 -21 1955 152 154 14 chr1 22459824 22460258 -220204095 - MLT1F LTR MaLR -41 501 7 180 289 19 0 chr1 22460451 22460503 -220203850 - MIR SINE MIR -56 152 100 511 255 37 31 chr1 22460654 22460815 -220203538 + MIR SINE MIR 33 194 -68 2338 98 0 9 chr1 22460817 22461132 -220203221 + AluSx SINE Alu 1 312 0 200 297 47 0 chr1 22461859 22461923 -220202430 + MIR SINE MIR 25 91 -171 232 318 119 8 chr1 22462911 22463037 -220201316 + MIR SINE MIR 103 242 -20 909 46 23 0 chr1 22463857 22463988 -220200365 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 528 254 146 5 chr1 22464455 22464640 -220199713 + MIR SINE MIR 36 246 -16 283 272 193 26 chr1 22464838 22464952 -220199401 + MIR SINE MIR 12 144 -118 334 218 178 10 chr1 22466209 22466310 -220198043 + MIR SINE MIR 71 188 -74 1979 132 0 7 chr1 22466315 22466650 -220197703 + AluSx SINE Alu 1 333 0 279 170 89 185 chr1 22466756 22466817 -220197536 - L2 LINE L2 -1 3271 3228 2188 82 51 0 chr1 22466817 22467111 -220197242 + AluSp SINE Alu 1 309 -4 279 170 89 185 chr1 22467111 22467184 -220197169 - L2 LINE L2 -44 3228 3150 502 286 90 33 chr1 22467322 22467567 -220196786 - MIR SINE MIR -1 261 3 1671 195 10 0 chr1 22467806 22468104 -220196249 + AluJo SINE Alu 1 301 -11 2457 60 0 22 chr1 22468107 22468425 -220195928 + AluY SINE Alu 1 311 0 1729 184 7 0 chr1 22468431 22468740 -220195613 + AluJb SINE Alu 2 312 0 312 206 82 0 chr1 22468800 22468859 -220195494 + MER113 DNA MER1_type? 1 72 -449 2399 69 3 0 chr1 22468859 22469162 -220195191 - AluY SINE Alu -7 304 1 312 206 82 0 chr1 22469162 22469199 -220195154 + MER113 DNA MER1_type? 72 105 -416 2464 99 25 8 chr1 22469291 22469653 -220194700 - L1PB1 LINE L1 -2 6149 5782 210 191 0 0 chr1 22469653 22469695 -220194658 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 3513 81 6 10 chr1 22469702 22470189 -220194164 - L1PB1 LINE L1 -360 5791 5303 2522 50 0 0 chr1 22470189 22470488 -220193865 - AluY SINE Alu -12 299 1 3513 81 6 10 chr1 22470488 22470592 -220193761 - L1PB1 LINE L1 -848 5303 5200 1199 274 18 9 chr1 22470609 22470949 -220193404 - LTR16C LTR ERVL 0 491 149 258 347 0 20 chr1 22471054 22471152 -220193201 + MIR SINE MIR 21 116 -92 394 266 13 5 chr1 22471750 22471869 -220192484 - MLT1J2 LTR MaLR -289 161 64 1766 151 17 3 chr1 22472080 22472379 -220191974 + AluJb SINE Alu 1 303 -9 1147 45 0 0 chr1 22472430 22472562 -220191791 + AluY SINE Alu 1 132 -179 1726 92 119 8 chr1 22473149 22473410 -220190943 + AluSg SINE Alu 1 290 -20 196 294 20 0 chr1 22473663 22473714 -220190639 - L2 LINE L2 -28 3285 3234 476 300 29 8 chr1 22473750 22473898 -220190455 - MIR SINE MIR -60 148 16 740 288 30 21 chr1 22474374 22474610 -220189743 - MIR SINE MIR -11 251 14 180 77 0 0 chr1 22474979 22475005 -220189348 + (TGGGGG)n Simple_repeat Simple_repeat 6 31 0 823 278 186 29 chr1 22475809 22476084 -220188269 - L2 LINE L2 -254 3059 2829 2390 74 0 19 chr1 22476084 22476393 -220187960 + AluSg SINE Alu 1 303 -7 823 278 186 29 chr1 22476393 22476875 -220187478 - L2 LINE L2 -484 2829 2183 224 261 98 76 chr1 22476866 22476958 -220187395 - MIR SINE MIR -149 113 20 * 782 178 0 0 chr1 22477109 22477227 -220187126 + AluJo SINE Alu 1 118 -184 696 213 0 0 chr1 22477243 22477370 -220186983 + AluJo SINE Alu 183 309 -3 221 307 0 40 chr1 22477445 22477520 -220186833 - MIR3 SINE MIR -25 183 112 361 299 39 39 chr1 22478913 22479067 -220185286 - MIR SINE MIR -78 184 31 226 283 0 0 chr1 22479119 22479172 -220185181 + (TGAG)n Simple_repeat Simple_repeat 3 55 0 335 186 0 0 chr1 22479753 22479812 -220184541 - L2 LINE L2 -1 3312 3254 1156 123 21 16 chr1 22480060 22480247 -220184106 - MER53 DNA DNA -1 188 1 285 247 20 34 chr1 22480490 22480636 -220183717 + (CAGAGA)n Simple_repeat Simple_repeat 1 144 0 217 379 106 0 chr1 22481182 22481314 -220183039 - MIR SINE MIR -7 255 110 496 325 91 17 chr1 22482081 22482312 -220182041 - MIR SINE MIR -14 248 1 727 300 22 22 chr1 22483439 22483669 -220180684 - MIR SINE MIR -13 249 20 332 234 234 8 chr1 22484404 22484532 -220179821 - MIR3 SINE MIR -32 176 20 255 313 221 0 chr1 22486772 22486903 -220177450 - L2 LINE L2 0 3272 3113 * 351 331 16 0 chr1 22486902 22487023 -220177330 + L2 LINE L2 3150 3272 0 517 260 107 60 chr1 22487050 22487406 -220176947 - L2 LINE L2 -173 3099 2725 332 276 82 8 chr1 22487837 22487971 -220176382 + L2 LINE L2 2657 2800 -514 543 272 169 14 chr1 22487989 22488202 -220176151 - MIR SINE MIR -1 261 16 425 323 85 40 chr1 22488514 22488664 -220175689 + L2 LINE L2 2620 2785 -529 2379 64 3 0 chr1 22488664 22488959 -220175394 + AluY SINE Alu 1 296 -15 425 323 85 40 chr1 22488959 22489031 -220175322 + L2 LINE L2 2785 2852 -462 1060 184 6 0 chr1 22489080 22489254 -220175099 - FAM SINE Alu 0 175 1 202 289 132 16 chr1 22489337 22489458 -220174895 + L2 LINE L2 3008 3142 -171 286 222 0 0 chr1 22490118 22490181 -220174172 - MIR SINE MIR -153 109 47 434 289 34 27 chr1 22490262 22490411 -220173942 - MIR SINE MIR -54 208 59 440 280 8 8 chr1 22490556 22490674 -220173679 + MIR SINE MIR 20 137 -125 251 246 9 0 chr1 22491998 22492108 -220172245 + GA-rich Low_complexity Low_complexity 2 112 0 213 270 14 14 chr1 22492125 22492199 -220172154 + GA-rich Low_complexity Low_complexity 3 76 0 313 341 6 39 chr1 22492311 22492546 -220171807 + GA-rich Low_complexity Low_complexity 1 227 0 195 296 0 0 chr1 22492791 22492835 -220171518 + L2 LINE L2 3250 3293 -20 312 102 0 0 chr1 22492835 22492884 -220171469 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 945 180 0 0 chr1 22492906 22493151 -220171202 + (TGGG)n Simple_repeat Simple_repeat 1 245 0 255 286 0 0 chr1 22494488 22494551 -220169802 + MIR SINE MIR 53 115 -93 229 260 0 0 chr1 22494700 22494750 -220169603 + CT-rich Low_complexity Low_complexity 2 51 0 345 242 289 0 chr1 22495390 22495539 -220168814 - MIR SINE MIR -67 195 4 727 158 0 36 chr1 22498503 22498642 -220165711 + L1PB3 LINE L1 6021 6154 0 344 254 88 18 chr1 22498671 22498785 -220165568 - MIR3 SINE MIR -72 136 15 326 264 171 7 chr1 22499029 22499169 -220165184 + L2 LINE L2 2896 3058 -214 293 304 98 0 chr1 22499227 22499329 -220165024 - MIR SINE MIR 0 262 151 590 355 50 16 chr1 22500216 22500458 -220163895 - MIR SINE MIR -12 250 1 325 223 78 29 chr1 22500565 22500668 -220163685 + MIR3 SINE MIR 71 178 -30 472 284 196 5 chr1 22500988 22501182 -220163171 + MIR SINE MIR 22 252 -10 313 336 130 0 chr1 22501865 22501996 -220162357 + MIR3 SINE MIR 25 172 -36 413 278 32 8 chr1 22502269 22502395 -220161958 + MIR SINE MIR 16 144 -118 2143 121 0 0 chr1 22503456 22503753 -220160600 - AluSx SINE Alu -15 297 1 185 239 22 0 chr1 22503845 22503891 -220160462 - L2 LINE L2 -2 3270 3224 510 17 0 0 chr1 22504198 22504257 -220160096 + (CA)n Simple_repeat Simple_repeat 2 60 0 333 253 94 18 chr1 22504292 22504447 -220159906 + MIR SINE MIR 34 198 -64 * 542 239 268 34 chr1 22504436 22504645 -220159708 - MIR SINE MIR -3 259 2 382 288 45 0 chr1 22504795 22504906 -220159447 + L2 LINE L2 3176 3291 -22 * 919 264 56 20 chr1 22504904 22505154 -220159199 - MIR SINE MIR -2 260 2 456 241 28 0 chr1 22506284 22506392 -220157961 - MER5A DNA MER1_type -60 129 19 210 341 12 0 chr1 22506895 22506977 -220157376 + L2 LINE L2 3159 3241 -31 311 261 0 11 chr1 22507462 22507550 -220156803 + GA-rich Low_complexity Low_complexity 1 87 0 32 0 0 0 chr1 22510477 22510509 -220153844 + GC_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr1 22510534 22510564 -220153789 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 22510625 22510653 -220153700 + GC_rich Low_complexity Low_complexity 1 28 0 210 91 0 0 chr1 22510659 22510692 -220153661 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 33 0 0 0 chr1 22510704 22510737 -220153616 + GC_rich Low_complexity Low_complexity 1 33 0 419 316 167 0 chr1 22510919 22511087 -220153266 - MIR SINE MIR -14 248 53 363 235 219 8 chr1 22511284 22511403 -220152950 + MIR3 SINE MIR 40 183 -25 299 241 46 0 chr1 22512410 22512497 -220151856 - MIR3 SINE MIR -25 183 93 294 296 56 32 chr1 22512598 22512723 -220151630 + MIR3 SINE MIR 45 172 -36 254 220 198 11 chr1 22512908 22512999 -220151354 - MIR SINE MIR -59 149 42 317 298 32 0 chr1 22513306 22513400 -220150953 + MIR SINE MIR 46 142 -120 808 275 47 0 chr1 22513517 22513750 -220150603 + MIR SINE MIR 19 262 0 361 296 45 30 chr1 22513786 22513918 -220150435 + L2 LINE L2 3137 3270 -2 * 388 329 14 41 chr1 22513911 22514057 -220150296 - MIR SINE MIR -1 261 120 222 326 107 21 chr1 22514895 22515105 -220149248 - MIR SINE MIR -4 258 9 2265 103 3 3 chr1 22515460 22515772 -220148581 - AluSp SINE Alu -1 312 1 284 234 0 0 chr1 22515991 22516055 -220148298 + MIR SINE MIR 65 128 -134 183 42 0 0 chr1 22516162 22516186 -220148167 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1815 112 0 103 chr1 22516328 22516494 -220147859 + AluSx SINE Alu 1 118 -194 2318 80 0 10 chr1 22516494 22516796 -220147557 + AluSc SINE Alu 1 299 -10 1815 112 0 103 chr1 22516796 22516959 -220147394 + AluSx SINE Alu 118 296 -16 207 100 0 0 chr1 22516959 22516989 -220147364 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 403 265 176 24 chr1 22517029 22517199 -220147154 - MIR SINE MIR -14 248 53 428 324 69 6 chr1 22517781 22517954 -220146399 - MIR SINE MIR -62 200 17 560 184 281 11 chr1 22518089 22518274 -220146079 - MIR SINE MIR -21 241 7 1830 132 43 13 chr1 22518311 22518614 -220145739 - AluJo SINE Alu 0 312 1 1468 176 30 43 chr1 22518614 22518915 -220145438 - AluJo SINE Alu -15 297 1 2349 99 0 0 chr1 22519460 22519773 -220144580 + AluSq SINE Alu 1 313 0 440 216 30 52 chr1 22519800 22519934 -220144419 - MIR3 SINE MIR -67 141 11 211 273 93 27 chr1 22520070 22520194 -220144159 - MIR SINE MIR -62 146 10 319 319 38 59 chr1 22520390 22520628 -220143725 - MIR SINE MIR 0 262 30 1517 201 4 4 chr1 22520676 22520955 -220143398 + AluJo SINE Alu 3 281 -31 269 179 71 18 chr1 22521104 22521160 -220143193 + MIR SINE MIR 124 182 -80 401 227 38 45 chr1 22522441 22522573 -220141780 - MIR SINE MIR -71 191 61 208 283 76 76 chr1 22523019 22523164 -220141189 - MIR SINE MIR -35 227 83 301 265 10 31 chr1 22523458 22523556 -220140797 - L2 LINE L2 -2 3270 3175 279 314 29 10 chr1 22523829 22523931 -220140422 + MIR SINE MIR 42 145 -63 577 251 24 48 chr1 22524049 22524216 -220140137 + MIR SINE MIR 87 249 -13 877 188 85 1 chr1 22524231 22524425 -220139928 + MIR SINE MIR 6 213 -37 182 36 0 36 chr1 22524454 22524482 -220139871 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 2353 103 0 0 chr1 22524581 22524891 -220139462 + AluSp SINE Alu 1 310 -3 213 121 0 0 chr1 22524894 22524927 -220139426 + (GGA)n Simple_repeat Simple_repeat 3 35 0 336 48 0 0 chr1 22524930 22524972 -220139381 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 204 240 40 0 chr1 22525093 22525143 -220139210 + L3 LINE CR1 1514 1565 -12 1933 139 9 25 chr1 22525143 22525460 -220138893 - AluJb SINE Alu 0 312 1 636 283 105 19 chr1 22525531 22525856 -220138497 + L1MC4a LINE L1 5600 5954 -167 1792 161 6 50 chr1 22525859 22526182 -220138171 + AluJb SINE Alu 1 309 -3 2226 123 3 0 chr1 22526182 22526492 -220137861 + AluSx SINE Alu 1 311 -1 368 367 54 0 chr1 22526596 22526743 -220137610 + L1ME4a LINE L1 5966 6120 -1 364 356 87 5 chr1 22526761 22526980 -220137373 - MIR SINE MIR -19 243 7 632 280 28 6 chr1 22527430 22527612 -220136741 + MIR SINE MIR 21 206 -56 333 302 45 49 chr1 22527945 22528210 -220136143 + L2 LINE L2 2712 2975 -339 1935 137 0 41 chr1 22528913 22529227 -220135126 - AluSx SINE Alu -11 301 1 672 300 152 10 chr1 22529349 22529659 -220134694 + L2 LINE L2 2919 3272 0 396 245 59 20 chr1 22529704 22529806 -220134547 - MIR SINE MIR -123 139 34 246 322 11 11 chr1 22529819 22529906 -220134447 - MIR3 SINE MIR -36 172 86 255 331 136 0 chr1 22529978 22530147 -220134206 - MIR SINE MIR -52 210 19 658 263 108 33 chr1 22530322 22530535 -220133818 - MIR SINE MIR -3 259 31 354 332 46 63 chr1 22530796 22530882 -220133471 + L2 LINE L2 2908 2994 -278 360 0 0 0 chr1 22530882 22530922 -220133431 + (CA)n Simple_repeat Simple_repeat 2 41 0 354 332 46 63 chr1 22530922 22531202 -220133151 + L2 LINE L2 2994 3268 -4 2432 78 3 0 chr1 22531284 22531593 -220132760 + AluSg SINE Alu 1 310 0 317 255 34 47 chr1 22531774 22531890 -220132463 - MIR SINE MIR -75 133 39 524 271 40 0 chr1 22532189 22532340 -220132013 + L2 LINE L2 2909 3065 -248 745 322 70 4 chr1 22532348 22532590 -220131763 + MIR SINE MIR 5 262 0 2305 89 0 13 chr1 22532624 22532937 -220131416 + AluSg1 SINE Alu 1 309 0 270 167 37 0 chr1 22533010 22533064 -220131289 - MIR SINE MIR -116 146 91 360 345 0 17 chr1 22533067 22533183 -220131170 + L2 LINE L2 3200 3313 0 1130 143 0 0 chr1 22533340 22533515 -220130838 + AluJb SINE Alu 137 311 -1 648 273 34 46 chr1 22533957 22534195 -220130158 + MIR SINE MIR 16 250 -12 280 324 165 0 chr1 22534404 22534574 -220129779 + MIR SINE MIR 48 245 -17 1646 146 0 11 chr1 22535224 22535484 -220128869 + AluSx SINE Alu 40 296 -16 306 251 40 10 chr1 22535612 22535722 -220128631 - MIR SINE MIR -82 126 15 380 317 32 8 chr1 22536178 22536301 -220128052 - MIR SINE MIR -62 146 21 649 280 123 0 chr1 22536417 22536628 -220127725 + MIR SINE MIR 24 260 -2 497 261 138 0 chr1 22537405 22537593 -220126760 - MIR SINE MIR -21 241 28 180 176 0 0 chr1 22539419 22539453 -220124900 + (CA)n Simple_repeat Simple_repeat 1 34 0 228 246 15 0 chr1 22539548 22539613 -220124740 + (CA)n Simple_repeat Simple_repeat 1 66 0 24 32 0 0 chr1 22539745 22539776 -220124577 + GC_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr1 22539832 22539863 -220124490 + GC_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr1 22539910 22539931 -220124422 + (CCCCCG)n Simple_repeat Simple_repeat 3 23 0 22 35 0 0 chr1 22540007 22540036 -220124317 + GC_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chr1 22540077 22540136 -220124217 + GC_rich Low_complexity Low_complexity 1 59 0 494 296 25 0 chr1 22540265 22540425 -220123928 + MIR SINE MIR 94 257 -5 338 61 20 0 chr1 22541548 22541597 -220122756 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 234 91 0 0 chr1 22541615 22541648 -220122705 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 237 65 0 0 chr1 22542063 22542094 -220122259 + (TGGGGG)n Simple_repeat Simple_repeat 3 33 0 716 239 5 70 chr1 22542306 22542519 -220121834 + MIR SINE MIR 51 249 -13 1902 172 3 0 chr1 22542531 22542839 -220121514 + AluJb SINE Alu 1 309 -3 2144 132 3 0 chr1 22542839 22543150 -220121203 + AluSx SINE Alu 1 312 0 348 317 32 0 chr1 22543240 22543363 -220120990 + L1MC4a LINE L1 5736 5862 -1946 192 297 47 0 chr1 22543397 22543461 -220120892 + MIR SINE MIR 47 113 -149 274 260 48 29 chr1 22543988 22544092 -220120261 + MIR SINE MIR 36 141 -67 2167 97 40 0 chr1 22544131 22544429 -220119924 + AluSg SINE Alu 1 310 0 203 280 20 0 chr1 22544922 22544972 -220119381 - MIR SINE MIR -16 246 196 * 340 208 26 13 chr1 22544952 22545029 -220119324 - L2 LINE L2 -22 3291 3214 209 341 87 0 chr1 22545691 22545817 -220118536 + MIR3 SINE MIR 12 148 -60 298 274 142 0 chr1 22545919 22546032 -220118321 + MER20B DNA MER1_type 1 129 -654 345 291 97 8 chr1 22546070 22546204 -220118149 + MER20B DNA MER1_type 194 339 -444 2099 115 23 13 chr1 22546267 22546571 -220117782 + AluSx SINE Alu 1 307 -5 756 171 8 0 chr1 22546581 22546698 -220117655 + FLAM_C SINE Alu 1 118 -25 21 0 0 0 chr1 22546703 22546724 -220117629 + AT_rich Low_complexity Low_complexity 1 21 0 1942 72 133 0 chr1 22546923 22547186 -220117167 - AluSp SINE Alu -5 298 1 457 271 100 7 chr1 22547758 22547898 -220116455 - MIR SINE MIR -21 241 89 389 362 78 12 chr1 22548256 22548329 -220116024 + MIR SINE MIR 2 69 -193 2027 119 7 0 chr1 22548329 22548615 -220115738 - AluSx SINE Alu -24 288 1 389 362 78 12 chr1 22548615 22548784 -220115569 + MIR SINE MIR 69 260 -2 2074 125 0 10 chr1 22548952 22549249 -220115104 + AluSx SINE Alu 5 298 -14 762 212 92 42 chr1 22549480 22549697 -220114656 + MIR SINE MIR 23 250 -12 307 310 228 7 chr1 22549729 22549874 -220114479 + MIR3 SINE MIR 17 193 -15 271 326 33 0 chr1 22550151 22550243 -220114110 + MIR SINE MIR 79 173 -89 341 121 0 35 chr1 22550320 22550378 -220113975 + MIR3 SINE MIR 132 187 -21 521 248 273 15 chr1 22550719 22550917 -220113436 + MIR SINE MIR 2 250 -12 386 320 49 0 chr1 22551963 22552113 -220112240 - MIR SINE MIR -58 150 35 223 309 63 32 chr1 22552217 22552343 -220112010 - MIR SINE MIR -57 151 22 189 161 0 0 chr1 22552581 22552612 -220111741 - L2 LINE L2 -18 3254 3224 329 257 55 50 chr1 22552893 22553053 -220111300 - MIR SINE MIR -62 146 12 558 352 45 0 chr1 22553054 22553253 -220111100 - MIR SINE MIR -20 242 35 252 163 23 0 chr1 22553311 22553354 -220110999 + MIR SINE MIR 93 136 -72 254 348 22 0 chr1 22553373 22553465 -220110888 + L2 LINE L2 3171 3264 -8 262 235 62 0 chr1 22553974 22554055 -220110298 - MIR SINE MIR -135 127 42 385 292 59 0 chr1 22555675 22555817 -220108536 + MIR SINE MIR 32 147 -61 34 55 0 0 chr1 22557415 22557470 -220106883 + GC_rich Low_complexity Low_complexity 1 55 0 535 241 11 0 chr1 22557478 22557618 -220106735 - MIR SINE MIR -61 147 22 232 204 19 0 chr1 22558027 22558081 -220106272 - MIR SINE MIR -84 124 70 193 224 121 17 chr1 22558967 22559025 -220105328 - MER5A DNA MER1_type -75 114 51 223 224 66 53 chr1 22560939 22561015 -220103338 - L2 LINE L2 -46 3226 3150 220 321 49 0 chr1 22561401 22561482 -220102871 - MIR SINE MIR -56 152 68 2112 106 0 47 chr1 22562095 22562229 -220102124 + AluSx SINE Alu 1 140 -172 2140 89 55 0 chr1 22562229 22562520 -220101833 + AluSc SINE Alu 2 308 -1 2112 106 0 47 chr1 22562520 22562707 -220101646 + AluSx SINE Alu 140 307 -5 301 345 76 67 chr1 22563469 22563692 -220100661 - MIR SINE MIR -21 241 17 249 159 0 0 chr1 22564007 22564051 -220100302 + (TG)n Simple_repeat Simple_repeat 2 45 0 1198 138 61 0 chr1 22564159 22564355 -220099998 - AluJo SINE Alu -20 292 85 200 296 74 25 chr1 22565241 22565322 -220099031 - MER5A DNA MER1_type -80 109 25 2134 97 21 0 chr1 22567686 22567975 -220096378 - AluSq SINE Alu -18 295 1 251 239 0 42 chr1 22568987 22569058 -220095295 - HAL1 LINE L1 0 2507 2440 285 267 61 23 chr1 22569124 22569240 -220095113 - HAL1 LINE L1 -72 2435 2312 2134 125 0 0 chr1 22569240 22569543 -220094810 - AluSx SINE Alu -9 303 1 285 267 61 23 chr1 22569543 22569557 -220094796 - HAL1 LINE L1 -195 2312 2300 609 325 126 12 chr1 22569765 22570251 -220094102 - HAL1 LINE L1 -444 2063 1523 344 319 60 92 chr1 22570267 22570576 -220093777 - HAL1 LINE L1 -1347 1160 793 2020 131 7 0 chr1 22570576 22570873 -220093480 + AluSg SINE Alu 1 299 -11 344 319 60 92 chr1 22570873 22570927 -220093426 - HAL1 LINE L1 -1714 793 739 1658 150 61 10 chr1 22570960 22571253 -220093100 + AluSx SINE Alu 1 308 -4 5223 170 56 35 chr1 22571258 22571364 -220092989 - L1MA4 LINE L1 -17 6283 6181 1470 169 4 11 chr1 22571364 22571625 -220092728 - AluJo SINE Alu -10 302 44 5223 170 56 35 chr1 22571625 22573302 -220091051 - L1MA4 LINE L1 -119 6181 4542 1959 126 44 7 chr1 22573302 22573596 -220090757 - AluSx SINE Alu -7 305 1 5223 170 56 35 chr1 22573596 22573669 -220090684 - L1MA4 LINE L1 -1758 4542 4472 251 162 0 0 chr1 22573669 22573706 -220090647 - tRNA-Val-GTT tRNA tRNA -39 37 1 5223 170 56 35 chr1 22573706 22573816 -220090537 - L1MA4 LINE L1 -1828 4472 4366 1679 167 36 0 chr1 22573816 22574097 -220090256 + AluSx SINE Alu 1 291 -21 5223 170 56 35 chr1 22574097 22574517 -220089836 - L1MA4 LINE L1 -1934 4366 3791 354 245 5 98 chr1 22574778 22574982 -220089371 - HAL1 LINE L1 -2131 376 192 279 91 0 0 chr1 22576208 22576252 -220088101 + FLAM_A SINE Alu 90 133 0 1938 164 3 19 chr1 22577903 22578220 -220086133 - AluJo SINE Alu 0 312 1 2245 114 3 3 chr1 22578424 22578730 -220085623 + AluSp SINE Alu 1 306 -7 1984 149 0 3 chr1 22578747 22579035 -220085318 + AluSx SINE Alu 5 291 -21 222 338 0 0 chr1 22580002 22580070 -220084283 - L2 LINE L2 -15 3298 3231 2484 77 0 6 chr1 22581682 22581993 -220082360 + AluSg1 SINE Alu 1 309 0 1304 129 55 0 chr1 22582897 22583099 -220081254 + AluJo SINE Alu 70 282 -30 318 264 33 66 chr1 22583298 22583510 -220080843 + L1MC5 LINE L1 7235 7439 -522 2171 114 7 3 chr1 22583548 22583856 -220080497 + AluSp SINE Alu 1 309 -4 2609 74 0 0 chr1 22584773 22585083 -220079270 + AluY SINE Alu 1 310 -1 1608 85 0 5 chr1 22586086 22586298 -220078055 + AluY SINE Alu 83 293 -18 363 301 56 48 chr1 22587073 22587283 -220077070 + MIR3 SINE MIR 9 217 -45 1869 148 3 7 chr1 22587357 22587655 -220076698 + AluSp SINE Alu 1 297 -16 1620 197 3 0 chr1 22588187 22588492 -220075861 - AluSx SINE Alu -1 311 6 1355 229 10 7 chr1 22588501 22588803 -220075550 - AluJb SINE Alu -7 305 3 296 223 102 102 chr1 22589313 22589519 -220074834 + L1ME3A LINE L1 5965 6170 0 199 248 143 0 chr1 22589556 22589661 -220074692 - L2 LINE L2 -2495 819 700 349 248 113 7 chr1 22589675 22589816 -220074537 + Charlie4 DNA MER1_type 105 260 -1701 1125 189 42 4 chr1 22589836 22590074 -220074279 + AluSx SINE Alu 1 247 -65 958 193 0 0 chr1 22591607 22591778 -220072575 + AluSg/x SINE Alu 139 309 -3 492 161 85 34 chr1 22592873 22592991 -220071362 - MER53 DNA DNA -65 124 1 291 109 0 0 chr1 22593252 22593298 -220071055 + L2 LINE L2 3267 3312 -1 279 275 192 0 chr1 22594467 22594587 -220069766 + MIR SINE MIR 53 195 -67 201 267 0 0 chr1 22595228 22595273 -220069080 + GA-rich Low_complexity Low_complexity 1 45 0 378 217 29 51 chr1 22596011 22596149 -220068204 + MIR SINE MIR 11 144 -67 1993 140 0 3 chr1 22596172 22596486 -220067867 - AluSq SINE Alu 0 313 1 2109 113 27 3 chr1 22597554 22597846 -220066507 + AluSg SINE Alu 1 299 -11 2238 119 0 6 chr1 22597846 22598158 -220066195 + AluSg SINE Alu 1 310 0 540 310 43 17 chr1 22599182 22599482 -220064871 + L2 LINE L2 2537 2844 -470 259 311 133 7 chr1 22599496 22599647 -220064706 + MER3 DNA MER1_type 40 209 0 * 892 170 101 37 chr1 22599647 22599701 -220064652 - MER3 DNA MER1_type -143 66 1 370 321 111 55 chr1 22599702 22600082 -220064271 + L2 LINE L2 2872 3272 0 1409 208 49 14 chr1 22600500 22600784 -220063569 - AluJo SINE Alu -18 294 1 483 252 57 46 chr1 22601291 22601472 -220062881 + L1ME3A LINE L1 5767 5948 -222 336 272 10 19 chr1 22601708 22601811 -220062542 + GA-rich Low_complexity Low_complexity 4 105 0 191 211 0 0 chr1 22604600 22604638 -220059715 - MIR SINE MIR -178 84 47 1632 180 11 7 chr1 22604644 22604972 -220059381 + AluSx SINE Alu 1 329 0 2027 130 7 0 chr1 22604981 22605265 -220059088 + AluSg SINE Alu 1 286 -24 252 0 0 0 chr1 22605268 22605296 -220059057 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 35 0 0 0 chr1 22605322 22605357 -220058996 + AT_rich Low_complexity Low_complexity 1 35 0 2327 105 0 10 chr1 22605364 22605677 -220058676 + AluSg SINE Alu 1 310 0 588 110 12 0 chr1 22605691 22605773 -220058580 - FRAM SINE Alu -31 145 63 1358 161 104 8 chr1 22605873 22606122 -220058231 - AluJo SINE Alu -39 273 1 268 279 23 0 chr1 22606396 22606482 -220057871 + L1MC/D LINE L1 5772 5859 -1949 25 75 0 0 chr1 22606890 22606943 -220057410 + AT_rich Low_complexity Low_complexity 1 53 0 1406 173 102 19 chr1 22607751 22608017 -220056336 - AluJo SINE Alu -19 293 6 759 304 129 41 chr1 22608017 22608681 -220055672 + HAL1 LINE L1 78 800 -1707 411 216 34 91 chr1 22608900 22609017 -220055336 + MIR SINE MIR 85 190 -72 2042 154 0 0 chr1 22609017 22609323 -220055030 + AluSx SINE Alu 5 310 -2 411 216 34 91 chr1 22609323 22609381 -220054972 + MIR SINE MIR 190 250 -12 2240 114 3 0 chr1 22609565 22609864 -220054489 - AluSx SINE Alu -12 300 1 273 230 0 0 chr1 22609963 22610037 -220054316 + CT-rich Low_complexity Low_complexity 1 74 0 1643 188 0 23 chr1 22610037 22610346 -220054007 - AluJb SINE Alu -10 302 1 1378 197 47 11 chr1 22611218 22611497 -220052856 - AluJo SINE Alu -21 291 3 650 193 0 4 chr1 22611799 22611971 -220052382 + AluJo SINE Alu 2 235 -77 3642 166 63 19 chr1 22612826 22613526 -220050827 - MER44D DNA MER2_type -1 604 2 2238 68 43 0 chr1 22613683 22613962 -220050391 + AluY SINE Alu 1 291 -20 1806 163 0 3 chr1 22614057 22614339 -220050014 + AluJb SINE Alu 1 281 -31 236 91 23 0 chr1 22614342 22614386 -220049967 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1693 135 77 0 chr1 22614613 22614898 -220049455 + AluSg SINE Alu 2 306 0 247 256 48 56 chr1 22614967 22615092 -220049261 + L1ME LINE L1 5568 5691 -430 1990 100 4 0 chr1 22615495 22615755 -220048598 - AluSg SINE Alu -12 298 38 2039 96 12 78 chr1 22615921 22616255 -220048098 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 22616369 22616392 -220047961 + AT_rich Low_complexity Low_complexity 1 23 0 807 146 0 29 chr1 22616404 22616541 -220047812 + FLAM_C SINE Alu 1 133 0 1861 99 80 56 chr1 22616545 22616847 -220047506 + AluSq SINE Alu 1 309 -4 2058 136 0 19 chr1 22617447 22617763 -220046590 - AluSx SINE Alu 0 312 3 637 170 121 21 chr1 22617770 22617911 -220046442 - FRAM SINE Alu -11 155 1 1621 188 0 0 chr1 22619226 22619492 -220044861 + AluJo SINE Alu 37 302 -10 1914 151 34 0 chr1 22619496 22619787 -220044566 + AluJb SINE Alu 1 301 -11 2122 115 20 3 chr1 22620170 22620465 -220043888 + AluSx SINE Alu 1 300 -12 516 249 61 56 chr1 22622132 22622329 -220042024 + MIR SINE MIR 20 217 -45 2208 108 0 3 chr1 22622403 22622700 -220041653 + AluSp SINE Alu 1 296 -17 2300 107 0 0 chr1 22625940 22626239 -220038114 + AluSg1 SINE Alu 4 302 -7 1768 158 30 7 chr1 22627093 22627380 -220036973 + AluSx SINE Alu 1 297 -15 186 43 0 0 chr1 22627380 22627403 -220036950 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1320 128 59 0 chr1 22627435 22627638 -220036715 + AluSg/x SINE Alu 89 303 -9 2276 110 7 0 chr1 22627693 22627993 -220036360 - AluSc SINE Alu -7 302 1 2018 134 3 3 chr1 22628200 22628499 -220035854 - AluSx SINE Alu -13 299 1 1428 137 92 92 chr1 22628629 22628964 -220035389 + L1MA7 LINE L1 5934 6271 -20 2267 114 7 0 chr1 22628964 22629270 -220035083 - AluSq SINE Alu -5 308 1 1428 137 92 92 chr1 22629270 22629291 -220035062 + L1MA7 LINE L1 6270 6290 -1 256 295 74 42 chr1 22629612 22629707 -220034646 + L2 LINE L2 3176 3273 -40 929 184 94 25 chr1 22629802 22629849 -220034504 + AluJo SINE Alu 85 127 -185 2171 117 0 7 chr1 22629849 22630149 -220034204 + AluSq SINE Alu 1 298 -15 2319 88 0 0 chr1 22630149 22630456 -220033897 + AluSq SINE Alu 1 307 0 929 184 94 25 chr1 22630456 22630607 -220033746 + AluJo SINE Alu 126 299 -13 343 198 125 0 chr1 22631209 22631305 -220033048 - L1MA9 LINE L1 0 6312 6205 23 0 0 0 chr1 22632087 22632110 -220032243 + AT_rich Low_complexity Low_complexity 1 23 0 874 207 29 29 chr1 22632226 22632400 -220031953 - AluJ SINE Alu -21 291 118 1808 153 0 55 chr1 22632421 22632589 -220031764 - AluSx SINE Alu -22 290 145 1957 135 32 26 chr1 22632589 22632900 -220031453 - AluSq SINE Alu 0 313 1 1808 153 0 55 chr1 22632900 22633038 -220031315 - AluSx SINE Alu -167 145 1 814 154 8 8 chr1 22633064 22633187 -220031166 - AluJ SINE Alu -187 125 3 24 53 0 0 chr1 22633201 22633239 -220031114 + AT_rich Low_complexity Low_complexity 1 38 0 1624 189 6 22 chr1 22634073 22634390 -220029963 - AluJo SINE Alu 0 312 1 979 182 6 0 chr1 22634555 22634720 -220029633 + AluJb SINE Alu 140 305 -7 2351 95 0 3 chr1 22635077 22635373 -220028980 - AluSx SINE Alu -17 295 1 870 224 53 33 chr1 22635533 22636047 -220028306 - Charlie2 DNA MER1_type -37 2825 2217 437 242 91 42 chr1 22636048 22636213 -220028140 - Charlie2 DNA MER1_type -2624 238 66 1718 128 0 4 chr1 22636215 22636457 -220027896 - AluSx SINE Alu -17 295 55 1965 115 49 0 chr1 22636622 22636908 -220027445 - AluSx SINE Alu -12 300 1 453 124 57 48 chr1 22637084 22637189 -220027164 + AluSp/q SINE Alu 205 310 -3 2403 144 60 70 chr1 22637189 22637562 -220026791 - L1MA7 LINE L1 -14 6277 5909 2161 98 7 3 chr1 22637562 22637858 -220026495 - AluSp SINE Alu -16 297 1 2403 144 60 70 chr1 22637858 22637998 -220026355 - L1MA7 LINE L1 -382 5909 5769 619 272 110 35 chr1 22638319 22638746 -220025607 + L1MEd LINE L1 742 1200 -4919 348 25 0 0 chr1 22638786 22638826 -220025527 + U7 snRNA snRNA 1 40 -23 235 290 100 50 chr1 22638866 22639166 -220025187 + HAL1 LINE L1 1372 1686 -821 1565 184 18 7 chr1 22639341 22639624 -220024729 + AluJo SINE Alu 1 286 -26 2336 108 0 13 chr1 22639904 22640220 -220024133 + AluSx SINE Alu 1 312 0 260 53 26 0 chr1 22640224 22640262 -220024091 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr1 22640653 22640676 -220023677 + AT_rich Low_complexity Low_complexity 1 23 0 216 342 54 18 chr1 22641094 22641205 -220023148 - L2 LINE L2 -2125 1189 1075 344 228 97 97 chr1 22641284 22641490 -220022863 + L1ME3A LINE L1 5965 6170 0 216 250 144 0 chr1 22641528 22641632 -220022721 - L2 LINE L2 -2496 818 700 361 248 113 7 chr1 22641646 22641787 -220022566 + Charlie4 DNA MER1_type 105 260 -1701 2179 125 10 10 chr1 22641807 22642119 -220022234 + AluSx SINE Alu 1 312 0 2403 93 3 3 chr1 22642142 22642454 -220021899 + AluSq SINE Alu 1 312 -1 264 59 0 0 chr1 22642931 22642965 -220021388 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1145 142 205 35 chr1 22642985 22643239 -220021114 + AluJb SINE Alu 11 307 -5 1286 143 219 8 chr1 22643870 22644107 -220020246 + AluSx SINE Alu 1 287 -15 2541 72 0 0 chr1 22645219 22645525 -220018828 - AluSq SINE Alu -7 306 1 2017 147 3 0 chr1 22646281 22646581 -220017772 + AluSx SINE Alu 1 301 -11 234 171 0 0 chr1 22646775 22646816 -220017537 - Alu SINE Alu -64 102 62 1744 236 242 44 chr1 22646871 22647248 -220017105 + L2 LINE L2 2005 2306 -1007 1693 205 0 0 chr1 22647248 22647555 -220016798 - AluJo SINE Alu -5 307 1 1744 236 242 44 chr1 22647555 22648243 -220016110 + L2 LINE L2 2306 3301 -12 2324 91 0 29 chr1 22648243 22648551 -220015802 + AluSp SINE Alu 1 299 -14 2178 101 3 0 chr1 22649413 22649699 -220014654 + AluSg SINE Alu 24 310 0 686 149 9 9 chr1 22649747 22649854 -220014499 - L1PB4 LINE L1 -13 6143 6037 21 0 0 0 chr1 22650535 22650556 -220013797 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 22650610 22650634 -220013719 + AT_rich Low_complexity Low_complexity 1 24 0 1540 151 92 11 chr1 22650922 22651194 -220013159 + AluSx SINE Alu 1 294 -18 2151 125 10 0 chr1 22651197 22651501 -220012852 + AluSx SINE Alu 1 307 -5 2183 123 0 0 chr1 22651533 22651833 -220012520 + AluSg SINE Alu 1 300 -10 1023 235 208 86 chr1 22652137 22652810 -220011543 + LTR41 LTR ERVL 7 761 -12 1781 163 33 3 chr1 22652931 22653231 -220011122 + AluJb SINE Alu 1 309 -3 276 206 16 16 chr1 22653231 22653286 -220011067 + LTR41 LTR ERVL 714 771 -2 805 180 8 0 chr1 22653403 22653531 -220010822 + FLAM_C SINE Alu 2 130 -13 2267 81 11 0 chr1 22653536 22653846 -220010507 + AluSp SINE Alu 1 313 0 2009 127 19 13 chr1 22653851 22654158 -220010195 + AluSx SINE Alu 1 309 -3 25 31 0 0 chr1 22654841 22654873 -220009480 + AT_rich Low_complexity Low_complexity 1 32 0 24 67 0 0 chr1 22654913 22654958 -220009395 + AT_rich Low_complexity Low_complexity 1 45 0 231 36 0 0 chr1 22655250 22655278 -220009075 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 553 228 44 0 chr1 22655482 22655618 -220008735 + L1MC4a LINE L1 5407 5548 -2260 1975 210 106 90 chr1 22655622 22655838 -220008515 + L1MC4a LINE L1 5587 5798 -2010 351 0 0 0 chr1 22655838 22655877 -220008476 + (CA)n Simple_repeat Simple_repeat 2 40 0 1975 210 106 90 chr1 22655877 22656134 -220008219 + L1MC4a LINE L1 5798 6049 -1759 1943 117 44 0 chr1 22656134 22656408 -220007945 + AluSg SINE Alu 1 286 -24 342 0 0 0 chr1 22656408 22656446 -220007907 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1975 210 106 90 chr1 22656446 22656542 -220007811 + L1MC4a LINE L1 6049 6142 -1666 2194 108 0 32 chr1 22656542 22656858 -220007495 + AluSx SINE Alu 1 306 -6 1975 210 106 90 chr1 22656858 22657109 -220007244 + L1MC4a LINE L1 6142 6423 -1385 3217 192 135 12 chr1 22657110 22657947 -220006406 + L1MC4 LINE L1 6774 7713 -329 2153 92 9 19 chr1 22658086 22658402 -220005951 + AluSq SINE Alu 1 313 0 2236 94 10 7 chr1 22658465 22658772 -220005581 + AluSp SINE Alu 1 308 -5 864 163 137 26 chr1 22658947 22659137 -220005216 - AluJo SINE Alu -16 296 86 950 185 5 54 chr1 22659261 22659445 -220004908 + FAM SINE Alu 1 175 0 2027 133 3 16 chr1 22659636 22659945 -220004408 + AluSx SINE Alu 1 305 -7 2592 59 0 0 chr1 22660238 22660541 -220003812 + AluSg SINE Alu 1 303 -7 2179 113 0 3 chr1 22661184 22661475 -220002878 + AluSp SINE Alu 1 290 -23 243 88 0 0 chr1 22661475 22661509 -220002844 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 1927 159 0 3 chr1 22661810 22662106 -220002247 + AluSx SINE Alu 3 297 -15 1878 102 0 23 chr1 22662118 22662383 -220001970 + AluSg1 SINE Alu 40 298 -11 1164 224 75 8 chr1 22662383 22662651 -220001702 - MER21B LTR ERV1 -566 297 12 2145 106 7 3 chr1 22662986 22663278 -220001075 + AluSx SINE Alu 1 293 -19 866 157 16 94 chr1 22663392 22663583 -220000770 + AluSg/x SINE Alu 135 310 0 1599 166 11 19 chr1 22663738 22664009 -220000344 + AluSx SINE Alu 1 269 -43 1694 139 47 0 chr1 22665723 22665997 -219998356 - AluSx SINE Alu -25 287 1 2136 89 3 64 chr1 22666008 22666321 -219998032 - AluSp SINE Alu -16 297 4 32 0 0 0 chr1 22666368 22666400 -219997953 + AT_rich Low_complexity Low_complexity 1 32 0 1466 149 0 105 chr1 22666552 22666875 -219997478 + AluJb SINE Alu 1 289 -23 2306 117 0 0 chr1 22667046 22667354 -219996999 - AluSx SINE Alu -4 308 1 1825 146 0 71 chr1 22667646 22667832 -219996521 - AluJb SINE Alu -12 300 145 2193 98 3 7 chr1 22667832 22668128 -219996225 - AluY SINE Alu -16 295 1 1825 146 0 71 chr1 22668128 22668264 -219996089 - AluJb SINE Alu -167 145 1 2259 112 0 0 chr1 22668304 22668600 -219995753 - AluSx SINE Alu -16 296 1 2339 113 0 0 chr1 22668658 22668969 -219995384 - AluSq SINE Alu -2 311 1 2163 108 0 20 chr1 22669217 22669523 -219994830 - AluSx SINE Alu -12 300 1 1862 150 3 35 chr1 22669800 22669973 -219994380 - AluJb SINE Alu -9 303 143 2436 83 0 0 chr1 22669973 22670273 -219994080 - AluY SINE Alu -9 302 3 1862 150 3 35 chr1 22670273 22670412 -219993941 - AluJb SINE Alu -169 143 1 243 0 0 0 chr1 22670639 22670666 -219993687 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1986 122 0 0 chr1 22670668 22670938 -219993415 - AluSq SINE Alu -43 270 1 2407 96 0 0 chr1 22671251 22671552 -219992801 - AluSx SINE Alu -11 301 1 815 172 16 0 chr1 22671552 22671674 -219992679 - AluJb SINE Alu -187 125 2 2057 112 3 11 chr1 22671953 22672240 -219992113 + AluSx SINE Alu 19 303 -9 207 279 33 33 chr1 22672313 22672374 -219991979 + MIR SINE MIR 25 85 -177 183 253 13 67 chr1 22672471 22672546 -219991807 + L2 LINE L2 2911 2981 -291 * 468 272 68 27 chr1 22672514 22672661 -219991692 + MIR SINE MIR 44 196 -66 1929 150 0 7 chr1 22672670 22672957 -219991396 + AluJb SINE Alu 3 287 -25 1473 111 14 24 chr1 22672969 22673176 -219991177 + AluSg/x SINE Alu 90 294 -18 2402 83 7 3 chr1 22673301 22673601 -219990752 + AluSx SINE Alu 1 301 -11 259 235 127 77 chr1 22673642 22673902 -219990451 - L1ME3 LINE L1 -84 6078 5806 850 137 0 8 chr1 22673906 22674030 -219990323 - FLAM_C SINE Alu -8 135 13 422 210 22 22 chr1 22674043 22674181 -219990172 - L1ME3 LINE L1 -351 5811 5674 820 231 6 23 chr1 22674184 22674357 -219989996 - AluJb SINE Alu -11 301 132 2001 134 14 0 chr1 22674372 22674662 -219989691 + AluSx SINE Alu 1 294 -18 483 96 0 130 chr1 22674665 22674780 -219989573 - L1PA14 LINE L1 -134 6027 5928 346 306 22 22 chr1 22674780 22674914 -219989439 - L1ME3 LINE L1 -1052 5094 4961 741 273 14 19 chr1 22675078 22675287 -219989066 + AluJo SINE Alu 97 304 -8 2371 92 0 0 chr1 22675863 22676157 -219988196 - AluY SINE Alu -17 294 1 269 100 0 0 chr1 22676402 22676442 -219987911 + FLAM SINE Alu 93 132 -1 2290 88 0 29 chr1 22676459 22676767 -219987586 + AluSg SINE Alu 1 299 -11 787 212 20 0 chr1 22676798 22676944 -219987409 + AluJb SINE Alu 64 212 -100 764 115 0 64 chr1 22676988 22677144 -219987209 - AluSg/x SINE Alu 0 310 165 747 137 58 0 chr1 22677259 22677398 -219986955 - L1MB8 LINE L1 -216 5962 5816 3445 193 51 19 chr1 22677412 22678392 -219985961 - L1MB5 LINE L1 -16 6158 5260 2252 100 3 6 chr1 22678392 22678703 -219985650 - AluSx SINE Alu -2 310 1 1229 182 55 33 chr1 22678711 22678886 -219985467 - AluJo SINE Alu -8 304 119 1943 89 28 98 chr1 22678886 22679212 -219985141 + AluYb8 SINE Alu 2 304 -14 1229 182 55 33 chr1 22679212 22679311 -219985042 - AluJo SINE Alu -193 119 24 710 191 8 8 chr1 22679346 22679477 -219984876 - FLAM_A SINE Alu 0 133 3 1332 185 53 59 chr1 22679477 22679795 -219984558 - L1M4 LINE L1 -579 5605 5281 2290 93 0 53 chr1 22679795 22680117 -219984236 - AluSg SINE Alu -5 305 1 1332 185 53 59 chr1 22680117 22680262 -219984091 - L1M4 LINE L1 -903 5281 5137 1488 208 14 14 chr1 22680294 22680573 -219983780 - AluJo SINE Alu -29 283 5 1311 162 3 125 chr1 22680667 22680994 -219983359 - AluJo SINE Alu -14 288 2 2361 82 24 0 chr1 22680997 22681291 -219983062 - AluSq SINE Alu -12 301 1 255 61 0 0 chr1 22681337 22681370 -219982983 + (T)n Simple_repeat Simple_repeat 1 33 0 737 170 0 0 chr1 22681396 22681508 -219982845 - FLAM_C SINE Alu -18 125 14 442 289 23 29 chr1 22681805 22681978 -219982375 - L1MC/D LINE L1 -2162 5646 5475 827 188 0 0 chr1 22682068 22682201 -219982152 - FLAM_A SINE Alu 0 133 1 1860 145 35 11 chr1 22682408 22682691 -219981662 + AluSx SINE Alu 1 290 -22 860 189 0 0 chr1 22682724 22682867 -219981486 + AluJb SINE Alu 157 299 -13 1937 125 14 4 chr1 22682926 22683253 -219981100 - AluSx SINE Alu 0 330 1 2300 113 0 0 chr1 22683254 22683556 -219980797 - AluSc SINE Alu -7 302 1 1604 145 0 126 chr1 22683738 22684107 -219980246 - AluSx SINE Alu 0 328 1 368 299 76 0 chr1 22684110 22684294 -219980059 - L1MC/D LINE L1 -2028 5780 5583 738 169 22 0 chr1 22684441 22684577 -219979776 - FLAM_C SINE Alu 0 143 5 2216 115 10 0 chr1 22684679 22684984 -219979369 - AluSg SINE Alu -2 308 1 2220 126 0 16 chr1 22685005 22685322 -219979031 - AluSx SINE Alu 0 312 1 2470 68 0 0 chr1 22685325 22685620 -219978733 - AluY SINE Alu -16 295 1 477 277 107 94 chr1 22685686 22686016 -219978337 - L1MC/D LINE L1 -984 5162 4823 2229 120 7 0 chr1 22686016 22686324 -219978029 - AluSp SINE Alu -3 310 1 477 277 107 94 chr1 22686324 22686459 -219977894 - L1MC/D LINE L1 -1323 4823 4691 91 19 0 0 chr1 22686470 22686575 -219977778 + AT_rich Low_complexity Low_complexity 1 105 0 2234 106 0 0 chr1 22686575 22686867 -219977486 - AluSg SINE Alu -17 293 2 971 245 176 7 chr1 22686870 22687249 -219977104 + L2 LINE L2 2771 3207 -106 867 216 22 17 chr1 22687263 22687444 -219976909 - AluJo SINE Alu -13 299 118 445 220 110 28 chr1 22687520 22687629 -219976724 - MIR SINE MIR -74 188 71 330 296 28 80 chr1 22687626 22687802 -219976551 + MIR SINE MIR 83 249 -13 * 862 224 0 0 chr1 22687810 22687999 -219976354 + AluSg/x SINE Alu 137 312 0 2424 87 0 0 chr1 22688106 22688405 -219975948 - AluSg1 SINE Alu -10 299 1 483 153 0 0 chr1 22688405 22688477 -219975876 - AluS SINE Alu -17 293 222 393 277 54 23 chr1 22688565 22688695 -219975658 + L2 LINE L2 2925 3058 -214 204 118 29 0 chr1 22688733 22688767 -219975586 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1401 176 49 104 chr1 22688805 22688887 -219975466 - MER69 DNA AcHobo -11 2515 2430 2334 119 0 0 chr1 22688887 22689189 -219975164 + AluSx SINE Alu 1 302 -10 1401 176 49 104 chr1 22689189 22689332 -219975021 - MER69 DNA AcHobo -96 2430 2281 809 178 0 22 chr1 22689332 22689467 -219974886 - FLAM_C SINE Alu -1 132 1 1401 176 49 104 chr1 22689467 22689535 -219974818 - MER69 DNA AcHobo -245 2281 2211 1964 161 0 16 chr1 22689535 22689840 -219974513 - AluJo SINE Alu -10 302 3 2168 119 0 7 chr1 22689849 22690151 -219974202 - AluSg SINE Alu -10 300 1 1401 176 49 104 chr1 22690151 22690231 -219974122 - MER69 DNA AcHobo -323 2203 2120 2521 78 0 0 chr1 22690231 22690540 -219973813 - AluY SINE Alu -2 309 1 1401 176 49 104 chr1 22690540 22690681 -219973672 - MER69 DNA AcHobo -406 2120 2017 1167 251 138 5 chr1 22690685 22691075 -219973278 - MER69 DNA AcHobo -658 568 127 2048 121 10 7 chr1 22691077 22691367 -219972986 - AluSx SINE Alu 0 312 22 2280 102 0 37 chr1 22691410 22691734 -219972619 - AluSx SINE Alu 0 312 1 1059 138 0 0 chr1 22691734 22691879 -219972474 - AluSq/x SINE Alu -168 145 1 269 245 0 64 chr1 22691906 22691972 -219972381 - MER4D LTR ERV1 -70 802 733 720 128 13 77 chr1 22691972 22692016 -219972337 - L1MB2 LINE L1 -7 6164 6119 1436 142 32 91 chr1 22692016 22692232 -219972121 - AluJo SINE Alu -21 291 97 1866 77 85 8 chr1 22692232 22692492 -219971861 - AluSx SINE Alu -12 300 21 1436 142 32 91 chr1 22692492 22692584 -219971769 - AluJo SINE Alu -215 97 1 720 128 13 77 chr1 22692584 22692695 -219971658 - L1MB2 LINE L1 -52 6119 6019 269 245 0 64 chr1 22692695 22692722 -219971631 - MER4D LTR ERV1 -139 733 715 325 77 0 0 chr1 22692731 22692783 -219971570 + Alu SINE Alu 1 52 -250 604 113 0 62 chr1 22692885 22692982 -219971371 - AluSg/x SINE Alu -132 180 90 1929 150 0 7 chr1 22692994 22693281 -219971072 - AluJb SINE Alu -25 287 3 468 272 68 27 chr1 22693290 22693437 -219970916 - MIR SINE MIR -66 196 44 183 253 13 67 chr1 22693405 22693480 -219970873 - L2 LINE L2 -291 2981 2911 * 207 279 33 33 chr1 22693577 22693638 -219970715 - MIR SINE MIR -177 85 25 2057 112 3 11 chr1 22693711 22693998 -219970355 - AluSx SINE Alu -9 303 19 789 172 16 0 chr1 22694277 22694399 -219969954 + AluJb SINE Alu 2 125 -187 2008 86 4 0 chr1 22694399 22694654 -219969699 + AluSx SINE Alu 1 256 -56 361 178 0 27 chr1 22694654 22694727 -219969626 - MER41C LTR ERV1 -483 71 1 187 370 63 0 chr1 22694728 22694855 -219969498 - L2 LINE L2 -1207 2107 1973 2446 101 0 0 chr1 22694856 22695162 -219969191 - AluSx SINE Alu -6 306 1 198 0 0 0 chr1 22695222 22695244 -219969109 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2194 112 0 0 chr1 22695258 22695544 -219968809 - AluSg SINE Alu -24 286 1 1706 193 24 3 chr1 22695544 22695840 -219968513 - AluJb SINE Alu -10 302 1 813 157 7 189 chr1 22695842 22696059 -219968294 - AluJb SINE Alu -20 292 136 2504 73 0 0 chr1 22696059 22696360 -219967993 - AluY SINE Alu 0 311 11 813 157 7 189 chr1 22696360 22696422 -219967931 - AluJb SINE Alu -176 136 64 1260 137 0 0 chr1 22696508 22696683 -219967670 + AluSg/x SINE Alu 133 307 -5 1883 145 3 48 chr1 22696695 22697006 -219967347 + AluJb SINE Alu 1 297 -15 962 170 0 55 chr1 22697011 22697236 -219967117 - MER33 DNA MER1_type -244 80 1 451 281 186 0 chr1 22697240 22697461 -219966892 + L2 LINE L2 1812 2073 -1241 364 206 59 81 chr1 22697465 22697601 -219966752 - LTR27 LTR ERV1 -2 634 502 2315 172 121 28 chr1 22697648 22697923 -219966430 - LTR28 LTR ERV1 -443 577 329 2335 110 0 0 chr1 22697923 22698224 -219966129 + AluSg SINE Alu 1 301 -9 2315 172 121 28 chr1 22698224 22698476 -219965877 - LTR28 LTR ERV1 -691 329 1 1953 141 39 0 chr1 22698589 22698873 -219965480 - AluSx SINE Alu -17 295 1 257 236 18 0 chr1 22698873 22698928 -219965425 + MER91 DNA MER1_type 135 190 0 1245 213 29 0 chr1 22699545 22699785 -219964568 + MIR SINE MIR 6 252 -10 250 192 55 27 chr1 22699812 22699885 -219964468 + MER113 DNA MER1_type? 38 112 -409 2352 69 0 0 chr1 22699905 22700207 -219964146 + AluSg SINE Alu 3 304 0 2190 88 0 69 chr1 22700457 22700776 -219963577 + AluSp SINE Alu 1 297 -16 1744 139 47 0 chr1 22700787 22701061 -219963292 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr1 22702430 22702453 -219961900 + GC_rich Low_complexity Low_complexity 1 23 0 2256 91 3 0 chr1 22703415 22703713 -219960640 + AluSp SINE Alu 1 299 -14 237 348 72 14 chr1 22703829 22703967 -219960386 - L2 LINE L2 -221 3051 2906 2366 61 7 7 chr1 22704030 22704387 -219959966 + AluY SINE Alu 2 358 0 2308 90 0 10 chr1 22704484 22704783 -219959570 - AluSq SINE Alu -17 296 1 2436 80 3 57 chr1 22704783 22705070 -219959283 - MER41B LTR ERV1 -270 365 103 1991 123 14 0 chr1 22705070 22705354 -219958999 + AluSg SINE Alu 1 288 -22 2436 80 3 57 chr1 22705354 22705452 -219958901 - MER41B LTR ERV1 -532 103 1 2092 131 7 0 chr1 22705730 22706028 -219958325 + AluJb SINE Alu 1 300 -12 2571 242 87 38 chr1 22706028 22706532 -219957821 + L2 LINE L2 1658 2136 -1178 4359 47 30 39 chr1 22706532 22706578 -219957775 - LTR10C LTR ERV1 0 591 546 2424 82 0 3 chr1 22706578 22706881 -219957472 + AluSc SINE Alu 1 302 -7 4359 47 30 39 chr1 22706881 22707120 -219957233 - LTR10C LTR ERV1 -45 546 307 2414 79 7 13 chr1 22707120 22707425 -219956928 + AluSp SINE Alu 1 303 -10 4359 47 30 39 chr1 22707425 22707654 -219956699 - LTR10C LTR ERV1 -284 307 79 2112 93 25 4 chr1 22707654 22707933 -219956420 - AluSp SINE Alu -26 287 3 4359 47 30 39 chr1 22707933 22708012 -219956341 - LTR10C LTR ERV1 -512 79 1 2571 242 87 38 chr1 22708012 22708348 -219956005 + L2 LINE L2 2136 2543 -771 292 73 24 0 chr1 22708396 22708437 -219955916 - AluJo SINE Alu -147 155 114 1711 117 0 43 chr1 22708444 22708701 -219955652 + AluSx SINE Alu 57 302 -10 229 188 58 101 chr1 22708712 22708781 -219955572 + L2 LINE L2 2570 2635 -679 3098 129 7 66 chr1 22708781 22708811 -219955542 + MER4B LTR ERV1 1 31 -579 2365 87 0 10 chr1 22708811 22709111 -219955242 + AluSq SINE Alu 1 297 -16 3098 129 7 66 chr1 22709111 22709690 -219954663 + MER4B LTR ERV1 31 574 -36 325 191 330 17 chr1 22709720 22709835 -219954518 + L2 LINE L2 2631 2781 -533 1006 172 5 61 chr1 22709835 22710033 -219954320 + AluJo SINE Alu 1 187 -125 2463 99 0 0 chr1 22710094 22710398 -219953955 + AluSq SINE Alu 1 304 -9 2483 87 3 0 chr1 22710398 22710710 -219953643 + AluSq SINE Alu 1 313 0 2924 158 39 58 chr1 22710710 22711245 -219953108 - MER41B LTR ERV1 -37 598 74 2048 94 0 4 chr1 22711245 22711501 -219952852 + AluY SINE Alu 1 255 -56 2924 158 39 58 chr1 22711501 22711574 -219952779 - MER41B LTR ERV1 -561 74 1 187 370 63 0 chr1 22711575 22711702 -219952651 - L2 LINE L2 -1207 2107 1973 2446 101 0 0 chr1 22711703 22712009 -219952344 - AluSx SINE Alu -6 306 1 1554 116 91 8 chr1 22712115 22712356 -219951997 - AluSx SINE Alu -31 281 21 583 176 11 0 chr1 22712356 22712447 -219951906 - AluJ/FLAM SINE Alu -219 93 2 664 119 9 0 chr1 22712450 22712559 -219951794 - L1MB2 LINE L1 -43 6128 6019 2046 85 4 4 chr1 22712595 22712855 -219951498 + AluSx SINE Alu 1 260 -52 644 100 0 0 chr1 22712855 22712945 -219951408 + AluSg/x SINE Alu 217 306 -6 2448 93 0 0 chr1 22712945 22713256 -219951097 + AluY SINE Alu 1 311 0 277 214 0 18 chr1 22713273 22713329 -219951024 - MER69 DNA AcHobo -1164 62 8 1699 112 142 0 chr1 22713482 22713742 -219950611 - AluSx SINE Alu -15 297 1 349 252 20 102 chr1 22713912 22713965 -219950388 - MIR SINE MIR -26 236 180 2376 102 0 10 chr1 22713965 22714270 -219950083 - AluSg SINE Alu -8 302 1 349 252 20 102 chr1 22714270 22714363 -219949990 - MIR SINE MIR -82 180 102 229 329 27 0 chr1 22714443 22714516 -219949837 - MIR3 SINE MIR -51 157 83 * 797 281 124 39 chr1 22714515 22714903 -219949450 - L2 LINE L2 0 3313 2893 380 315 56 39 chr1 22715757 22715935 -219948418 + MIR SINE MIR 65 245 -17 2422 84 0 0 chr1 22715939 22716238 -219948115 + AluSc SINE Alu 1 299 -10 233 254 75 0 chr1 22716456 22716523 -219947830 - MIR SINE MIR -22 240 169 469 207 57 33 chr1 22716523 22716772 -219947581 - MLT1L LTR MaLR 0 615 309 2236 82 10 3 chr1 22716801 22717094 -219947259 - AluSx SINE Alu -17 295 1 674 267 42 2 chr1 22717143 22717330 -219947023 - MIR SINE MIR -42 166 5 26 0 0 0 chr1 22717587 22717613 -219946740 + GC_rich Low_complexity Low_complexity 1 26 0 295 264 24 8 chr1 22718017 22718142 -219946211 + (CA)n Simple_repeat Simple_repeat 1 127 0 752 164 23 0 chr1 22718422 22718550 -219945803 + FLAM_C SINE Alu 3 133 0 32 0 0 0 chr1 22718550 22718582 -219945771 + AT_rich Low_complexity Low_complexity 1 32 0 365 307 61 0 chr1 22718582 22718696 -219945657 + MIR SINE MIR 136 256 -6 510 182 30 10 chr1 22719369 22719468 -219944885 - MIR3 SINE MIR -48 160 60 991 251 191 25 chr1 22719649 22720199 -219944154 + L2 LINE L2 2019 2659 -655 1670 156 13 53 chr1 22720236 22720537 -219943816 - AluJb SINE Alu 0 312 24 1555 132 75 233 chr1 22720537 22720779 -219943574 - L1MC3 LINE L1 -10 7775 7496 180 0 0 0 chr1 22720779 22720799 -219943554 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2169 109 0 14 chr1 22720805 22721098 -219943255 - AluSx SINE Alu -23 289 1 1164 67 0 0 chr1 22721098 22721233 -219943120 - AluSp SINE Alu -178 135 1 1555 132 75 233 chr1 22721233 22721634 -219942719 - L1MC3 LINE L1 -292 7493 7114 421 261 71 78 chr1 22721641 22721924 -219942429 + L2 LINE L2 2696 2976 -338 2220 83 10 0 chr1 22722013 22722302 -219942051 + AluSp SINE Alu 1 292 -21 425 17 33 0 chr1 22722348 22722408 -219941945 + MSTA LTR MaLR 321 382 -46 37 69 0 0 chr1 22722408 22722480 -219941873 + AT_rich Low_complexity Low_complexity 1 72 0 914 183 33 64 chr1 22722481 22722672 -219941681 + L1MB3 LINE L1 5918 6101 -82 3041 101 31 0 chr1 22722672 22723086 -219941267 - MSTA LTR MaLR -1 427 1 914 183 33 64 chr1 22723086 22723166 -219941187 + L1MB3 LINE L1 6101 6182 -1 2397 44 40 0 chr1 22723176 22723473 -219940880 + AluYa5 SINE Alu 2 310 -1 504 278 73 16 chr1 22723503 22723694 -219940659 + L2 LINE L2 3111 3312 -1 416 196 83 83 chr1 22723703 22723836 -219940517 + MIR SINE MIR 111 243 -19 2003 120 3 0 chr1 22723837 22724120 -219940233 + AluJb SINE Alu 1 284 -28 333 277 216 0 chr1 22724167 22724315 -219940038 + MIR SINE MIR 21 200 -62 390 236 165 16 chr1 22724916 22725043 -219939310 + MIR SINE MIR 29 174 -88 24 32 0 0 chr1 22726150 22726181 -219938172 + AT_rich Low_complexity Low_complexity 1 31 0 1219 214 79 6 chr1 22727846 22728187 -219936166 + Charlie4a DNA MER1_type 28 393 -115 189 0 0 0 chr1 22728196 22728217 -219936136 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 444 224 47 9 chr1 22728240 22728347 -219936006 - MER81 DNA DNA -2 112 2 192 293 43 112 chr1 22728575 22728691 -219935662 - MIR SINE MIR -3 259 152 2185 116 10 0 chr1 22728701 22729004 -219935349 - AluSx SINE Alu -6 306 1 1607 186 49 0 chr1 22729004 22729289 -219935064 - AluJo SINE Alu -13 299 1 909 127 0 8 chr1 22729291 22729425 -219934928 - AluJo/FLAM SINE Alu -179 133 1 2203 88 3 14 chr1 22729435 22729730 -219934623 - AluSp SINE Alu -21 292 1 241 204 0 0 chr1 22729796 22729814 -219934539 + Alu SINE Alu 118 135 -168 288 70 23 0 chr1 22729814 22729857 -219934496 + Alu SINE Alu 1 44 -258 2018 110 4 0 chr1 22729857 22730138 -219934215 + AluSx SINE Alu 10 291 -21 723 208 73 62 chr1 22730138 22730330 -219934023 - MIR SINE MIR -62 200 7 353 252 49 16 chr1 22730552 22730675 -219933678 - MIR3 SINE MIR -70 138 12 410 283 110 6 chr1 22731504 22731683 -219932670 - MIR SINE MIR -18 244 47 222 306 36 27 chr1 22732100 22732211 -219932142 - MIR SINE MIR -56 152 41 2297 90 0 10 chr1 22733322 22733632 -219930721 + AluSq SINE Alu 1 307 -6 307 282 122 50 chr1 22734976 22735157 -219929196 + L2 LINE L2 3106 3299 -14 243 79 0 0 chr1 22735157 22735195 -219929158 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 226 314 12 12 chr1 22735840 22735926 -219928427 + GA-rich Low_complexity Low_complexity 5 90 0 414 280 113 36 chr1 22736903 22737071 -219927282 - MIR SINE MIR -67 195 15 270 226 24 36 chr1 22737956 22738040 -219926313 + (CTCA)n Simple_repeat Simple_repeat 4 86 0 668 195 0 0 chr1 22738082 22738195 -219926158 - FAM SINE Alu -71 114 2 2341 95 0 0 chr1 22738610 22738915 -219925438 + AluSx SINE Alu 1 305 -7 264 294 1 60 chr1 22739056 22739148 -219925205 - MIR SINE MIR -111 97 10 358 277 155 14 chr1 22739166 22739233 -219925120 - MIR SINE MIR -8 254 198 2213 98 3 3 chr1 22739233 22739528 -219924825 - AluSq SINE Alu -16 297 3 358 277 155 14 chr1 22739528 22739608 -219924745 - MIR SINE MIR -64 198 86 2106 68 14 37 chr1 22740199 22740495 -219923858 - AluSx SINE Alu -23 289 1 723 245 64 60 chr1 22740635 22740760 -219923593 - MIR SINE MIR -12 250 127 2260 109 0 0 chr1 22740760 22741072 -219923281 + AluSx SINE Alu 1 312 0 723 245 64 60 chr1 22741072 22741195 -219923158 - MIR SINE MIR -135 127 1 1671 133 4 12 chr1 22743029 22743213 -219921140 - AluSx SINE Alu 0 318 135 2081 107 17 3 chr1 22743213 22743513 -219920840 - AluY SINE Alu -7 304 1 1671 133 4 12 chr1 22743513 22743609 -219920744 - AluSx SINE Alu -183 135 40 624 144 0 0 chr1 22743609 22743699 -219920654 - AluJ/FLAM SINE Alu -222 90 1 285 296 23 29 chr1 22743757 22743929 -219920424 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 259 304 107 0 chr1 22744294 22744406 -219919947 - MIR SINE MIR -116 146 23 341 192 283 0 chr1 22745441 22745540 -219918813 - MIR3 SINE MIR -53 155 29 416 270 63 69 chr1 22746423 22746557 -219917796 + MER91B DNA MER1_type 3 137 -53 1960 119 42 0 chr1 22746557 22746842 -219917511 - AluSx SINE Alu -15 297 1 416 270 63 69 chr1 22746842 22746896 -219917457 + MER91B DNA MER1_type 137 190 0 1192 213 29 0 chr1 22747512 22747752 -219916601 + MIR SINE MIR 6 252 -10 237 309 21 0 chr1 22747758 22747852 -219916501 + MER113 DNA MER1_type? 17 112 -409 2262 69 0 0 chr1 22747872 22748174 -219916179 + AluSg SINE Alu 3 304 0 1741 143 11 7 chr1 22748275 22748577 -219915776 - AluSx SINE Alu 0 308 6 242 397 22 15 chr1 22748673 22748809 -219915544 - MIR SINE MIR -108 154 18 2309 98 0 0 chr1 22749621 22749916 -219914437 + AluSx SINE Alu 1 295 -17 401 230 11 0 chr1 22749920 22750007 -219914346 - MIR SINE MIR 0 262 175 415 204 11 0 chr1 22750015 22750103 -219914250 + MER3 DNA MER1_type 17 105 -104 274 361 57 0 chr1 22751240 22751362 -219912991 + L2 LINE L2 3144 3272 0 234 269 194 0 chr1 22751362 22751455 -219912898 + L2 LINE L2 3162 3272 0 233 250 216 0 chr1 22752366 22752482 -219911871 + MER104 DNA Tc2 1 141 -39 282 286 9 67 chr1 22752482 22752587 -219911766 - MIR SINE MIR -139 123 25 2226 82 3 3 chr1 22752588 22752880 -219911473 - AluSg SINE Alu -18 292 1 476 258 161 0 chr1 22753604 22753759 -219910594 + MER104 DNA MER2_type 1 180 0 795 236 95 21 chr1 22753789 22753877 -219910476 - MIR SINE MIR 0 262 182 2388 77 0 0 chr1 22753877 22754175 -219910178 - AluSx SINE Alu -14 298 1 795 236 95 21 chr1 22754175 22754327 -219910026 - MIR SINE MIR -80 182 4 360 254 108 75 chr1 22756317 22756362 -219907991 - MIR SINE MIR -50 212 170 2228 53 3 30 chr1 22756362 22756707 -219907646 + AluY SINE Alu 1 311 0 360 254 108 75 chr1 22756707 22756865 -219907488 - MIR SINE MIR -92 170 4 1287 306 43 20 chr1 22758855 22759311 -219905042 + L2 LINE L2 2603 3091 -222 2251 95 3 0 chr1 22759311 22759616 -219904737 - AluSx SINE Alu -6 306 1 1287 306 43 20 chr1 22759616 22759845 -219904508 + L2 LINE L2 3091 3313 0 1421 319 161 22 chr1 22760380 22761535 -219902818 + L2 LINE L2 1070 2384 -930 996 289 56 19 chr1 22761535 22761912 -219902441 + LTR16C LTR ERVL 1 391 -100 2109 123 0 3 chr1 22761945 22762245 -219902108 - AluSg SINE Alu -11 299 1 281 360 59 20 chr1 22762248 22762401 -219901952 + L2 LINE L2 2473 2631 -683 2120 98 21 0 chr1 22763394 22763680 -219900673 - AluY SINE Alu -19 292 1 496 313 60 34 chr1 22763680 22763913 -219900440 - L2 LINE L2 -12 3260 3022 465 336 0 8 chr1 22764022 22764153 -219900200 + L2 LINE L2 3143 3272 0 252 273 41 41 chr1 22764131 22764252 -219900101 - L2 LINE L2 -225 3047 2927 * 820 102 79 31 chr1 22764271 22764398 -219899955 + FLAM_C SINE Alu 1 133 0 526 290 13 18 chr1 22765039 22765197 -219899156 + L1ME LINE L1 5572 5730 -391 2264 112 3 3 chr1 22765197 22765509 -219898844 + AluSx SINE Alu 1 312 0 526 290 13 18 chr1 22765509 22765574 -219898779 + L1ME LINE L1 5730 5794 -327 2082 101 50 0 chr1 22765688 22765986 -219898367 + AluSq SINE Alu 1 313 0 2372 77 7 3 chr1 22765986 22766296 -219898057 + AluY SINE Alu 1 311 0 602 171 111 0 chr1 22766496 22766613 -219897740 + FLAM_A SINE Alu 1 130 -3 835 160 8 0 chr1 22766620 22766751 -219897602 + FLAM_C SINE Alu 1 132 -1 507 263 63 23 chr1 22767440 22767615 -219896738 + MIR SINE MIR 9 190 -72 397 312 64 23 chr1 22769130 22769348 -219895005 + MLT1K LTR MaLR 3 229 -359 303 311 22 22 chr1 22769432 22769567 -219894786 + MLT1K LTR MaLR 448 582 -6 1251 178 28 91 chr1 22769958 22770278 -219894075 - AluJo SINE Alu 0 302 3 669 292 49 5 chr1 22770282 22770467 -219893886 + MIR SINE MIR 8 200 -62 2043 132 7 0 chr1 22770622 22770925 -219893428 - AluSq SINE Alu -8 305 1 2203 104 3 0 chr1 22770936 22771233 -219893120 - AluSx SINE Alu -14 298 1 209 267 0 0 chr1 22771321 22771366 -219892987 + (ATG)n Simple_repeat Simple_repeat 1 45 0 389 293 134 18 chr1 22771585 22771749 -219892604 + MIR3 SINE MIR 23 205 -3 230 79 0 26 chr1 22772392 22772430 -219891923 + (GGA)n Simple_repeat Simple_repeat 2 38 0 219 154 26 0 chr1 22774052 22774091 -219890262 + (CCA)n Simple_repeat Simple_repeat 2 41 0 1987 133 0 7 chr1 22774150 22774443 -219889910 - AluJb SINE Alu -7 305 15 550 279 175 0 chr1 22774481 22774664 -219889689 + MIR SINE MIR 47 261 -1 239 344 13 18 chr1 22774832 22774982 -219889371 - MIR SINE MIR -19 243 11 311 229 24 36 chr1 22776100 22776183 -219888170 - MIR SINE MIR -78 184 103 233 276 112 0 chr1 22776432 22776530 -219887823 - MIR3 SINE MIR -52 156 48 523 289 66 20 chr1 22777010 22777207 -219887146 - MIR SINE MIR -6 256 51 196 392 11 39 chr1 22777906 22778087 -219886266 - MIR SINE MIR -1 261 86 418 204 124 45 chr1 22778095 22778296 -219886057 + LTR16A1 LTR ERVL 142 358 -99 273 271 198 10 chr1 22778360 22778456 -219885897 - MIR SINE MIR -87 175 62 194 274 75 82 chr1 22778990 22779136 -219885217 + L2 LINE L2 2868 3012 -260 2299 92 0 6 chr1 22779671 22779985 -219884368 + AluSx SINE Alu 1 312 0 595 261 106 24 chr1 22780148 22780355 -219883998 - MIR SINE MIR -13 249 26 2292 89 7 0 chr1 22780389 22780691 -219883662 - AluSq SINE Alu -9 304 1 290 333 27 9 chr1 22780709 22780820 -219883533 + MIR SINE MIR 95 207 -55 193 213 0 21 chr1 22780855 22780902 -219883451 - MIR SINE MIR -143 65 20 344 316 156 8 chr1 22781688 22781849 -219882504 - MIR3 SINE MIR -63 145 3 837 321 146 40 chr1 22782063 22782549 -219881804 - L3 LINE CR1 -18 1559 1001 2269 104 0 0 chr1 22782549 22782846 -219881507 - AluSx SINE Alu -15 297 1 837 321 146 40 chr1 22782846 22782935 -219881418 - L3 LINE CR1 -576 1001 923 272 304 123 34 chr1 22783831 22784035 -219880318 - L2 LINE L2 -24 3248 3027 2196 125 0 0 chr1 22784554 22784865 -219879488 + AluSx SINE Alu 2 312 0 303 272 65 0 chr1 22785147 22785239 -219879114 + MIR SINE MIR 117 214 -48 423 0 0 0 chr1 22785293 22785340 -219879013 + (CA)n Simple_repeat Simple_repeat 2 48 0 251 297 14 0 chr1 22785390 22785460 -219878893 + MER3 DNA MER1_type 1 71 -138 256 36 0 91 chr1 22785460 22785515 -219878838 - MADE1 DNA Mariner 0 80 31 * 380 235 168 0 chr1 22785514 22785633 -219878720 + MER3 DNA MER1_type 71 209 0 529 337 23 0 chr1 22785641 22785816 -219878537 - L3 LINE CR1 -133 1444 1266 240 308 86 12 chr1 22785962 22786102 -219878251 + MIR SINE MIR 27 141 -67 1865 148 0 23 chr1 22786216 22786521 -219877832 - AluJo SINE Alu -14 298 1 208 379 73 16 chr1 22786631 22786755 -219877598 - MIR SINE MIR -130 132 2 298 270 106 15 chr1 22786759 22786914 -219877439 - MIR3 SINE MIR -21 187 19 634 316 35 13 chr1 22786970 22787201 -219877152 - MIR SINE MIR -5 257 22 278 229 10 0 chr1 22789602 22789698 -219874655 + (TGGA)n Simple_repeat Simple_repeat 3 99 0 207 284 23 23 chr1 22789989 22790077 -219874276 + G-rich Low_complexity Low_complexity 2 89 0 961 120 0 0 chr1 22791366 22791499 -219872854 - FLAM_C SINE Alu 0 133 1 1190 123 0 0 chr1 22791813 22791984 -219872369 - FRAM SINE Alu -6 170 1 332 345 126 34 chr1 22791993 22792199 -219872154 + L3 LINE CR1 1010 1234 -343 324 267 48 19 chr1 22792226 22792331 -219872022 + MIR SINE MIR 23 130 -132 379 337 59 25 chr1 22792380 22792582 -219871771 + MIR SINE MIR 52 260 -2 338 320 33 8 chr1 22792709 22792831 -219871522 + L3 LINE CR1 1382 1506 -71 288 294 92 8 chr1 22793956 22794075 -219870278 + L2 LINE L2 2978 3106 -166 282 233 67 113 chr1 22794177 22794327 -219870026 + MIR SINE MIR 105 247 -15 353 302 56 16 chr1 22794344 22794470 -219869883 + L2 LINE L2 3138 3268 -4 1702 166 0 0 chr1 22794506 22794771 -219869582 - AluJo SINE Alu -14 298 34 2099 91 57 17 chr1 22795486 22795784 -219868569 + AluSx SINE Alu 1 310 -2 230 234 39 26 chr1 22796369 22796446 -219867907 + GA-rich Low_complexity Low_complexity 2 79 0 214 209 37 15 chr1 22796565 22796699 -219867654 + (CAGAGA)n Simple_repeat Simple_repeat 2 138 0 430 310 29 11 chr1 22796704 22796878 -219867475 + GA-rich Low_complexity Low_complexity 1 177 0 343 298 24 0 chr1 22798888 22798972 -219865381 - L2 LINE L2 -11 3302 3217 318 292 21 0 chr1 22800382 22800478 -219863875 + L2 LINE L2 2941 3038 -234 553 247 240 17 chr1 22800479 22800775 -219863578 + L1ME1 LINE L1 5799 6160 -6 244 200 235 35 chr1 22800860 22800975 -219863378 + L2 LINE L2 3176 3313 0 201 284 40 14 chr1 22801338 22801412 -219862941 - MER5A DNA MER1_type -18 171 96 387 287 277 0 chr1 22802283 22802485 -219861868 - MIR SINE MIR 0 262 5 218 326 10 61 chr1 22802879 22802977 -219861376 - MIR SINE MIR -88 120 28 1719 111 8 0 chr1 22803550 22803784 -219860569 + AluSx SINE Alu 57 292 -20 896 284 11 11 chr1 22803792 22804053 -219860300 + MER46C DNA MER2_type 78 338 0 261 204 0 0 chr1 22804053 22804102 -219860251 - MIR SINE MIR -105 157 109 600 335 26 4 chr1 22805263 22805493 -219858860 - MIR SINE MIR -8 254 20 249 247 79 22 chr1 22805648 22805737 -219858616 + MIR3 SINE MIR 12 105 -103 231 211 145 13 chr1 22805829 22805905 -219858448 + L2 LINE L2 3209 3294 -19 219 295 148 0 chr1 22805923 22806060 -219858293 - MIR SINE MIR -63 145 44 2245 77 3 13 chr1 22806208 22806544 -219857809 + AluSq SINE Alu 1 313 0 180 289 0 0 chr1 22806842 22806887 -219857466 + MIR3 SINE MIR 116 160 -48 429 332 75 58 chr1 22806904 22807320 -219857033 - L2 LINE L2 0 3272 2850 216 295 66 85 chr1 22807957 22808040 -219856313 + L2 LINE L2 2737 2820 -493 326 42 21 0 chr1 22808040 22808088 -219856265 + (CA)n Simple_repeat Simple_repeat 2 50 0 216 295 66 85 chr1 22808088 22808121 -219856232 + L2 LINE L2 2820 2852 -461 297 68 0 0 chr1 22808121 22808165 -219856188 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 295 66 85 chr1 22808165 22808342 -219856011 + L2 LINE L2 2852 3039 -274 2193 88 0 0 chr1 22808353 22808637 -219855716 + AluSq SINE Alu 10 293 -20 1612 154 4 0 chr1 22808654 22808900 -219855453 + AluJo SINE Alu 42 288 -24 186 43 0 0 chr1 22808901 22808924 -219855429 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 348 258 129 0 chr1 22808928 22809021 -219855332 - MIR SINE MIR -68 140 36 193 281 11 34 chr1 22810241 22810330 -219854023 + MIR3 SINE MIR 96 182 -26 1664 126 85 7 chr1 22810428 22810698 -219853655 - AluJo SINE Alu -21 291 1 748 237 40 50 chr1 22810743 22810941 -219853412 + MIR SINE MIR 61 256 -6 2082 81 60 3 chr1 22811728 22812013 -219852340 + AluSg SINE Alu 1 301 -9 246 227 320 21 chr1 22813298 22813395 -219850958 + MIR SINE MIR 25 150 -58 336 223 184 10 chr1 22813472 22813575 -219850778 + L2 LINE L2 3193 3313 0 506 312 77 37 chr1 22813671 22813874 -219850479 - MIR SINE MIR -18 244 35 393 301 135 0 chr1 22813916 22814079 -219850274 + MIR SINE MIR 21 205 -57 228 242 10 40 chr1 22814658 22814757 -219849596 + (CAGCC)n Simple_repeat Simple_repeat 2 97 0 580 229 92 7 chr1 22815056 22815209 -219849144 + MIR SINE MIR 67 232 -30 337 275 83 4 chr1 22815352 22815491 -219848862 - MIR3 SINE MIR -8 200 49 198 175 108 133 chr1 22815459 22815579 -219848774 + MIR SINE MIR 37 153 -109 * 2046 145 0 0 chr1 22815583 22815879 -219848474 + AluSx SINE Alu 2 297 -15 318 394 81 5 chr1 22816725 22816946 -219847407 + MIR SINE MIR 23 260 -2 477 285 169 20 chr1 22817015 22817317 -219847036 - L2 LINE L2 -85 3228 2882 181 365 48 0 chr1 22817316 22817379 -219846974 - MIR SINE MIR -71 191 126 * 227 398 11 0 chr1 22817474 22817567 -219846786 + MIR SINE MIR 41 134 -74 329 243 216 27 chr1 22818514 22818529 -219845824 - MIR SINE MIR -51 211 200 703 189 85 99 chr1 22818529 22818647 -219845706 + MER3 DNA MER1_type 1 119 -90 2375 90 0 3 chr1 22818647 22818959 -219845394 + AluSx SINE Alu 2 312 0 2044 112 0 45 chr1 22818963 22819098 -219845255 + AluSg SINE Alu 1 141 -169 2126 121 0 13 chr1 22819098 22819412 -219844941 + AluY SINE Alu 1 310 -1 2044 112 0 45 chr1 22819412 22819588 -219844765 + AluSg SINE Alu 141 298 -12 703 189 85 99 chr1 22819588 22819676 -219844677 + MER3 DNA MER1_type 122 209 0 329 243 216 27 chr1 22819676 22819808 -219844545 - MIR SINE MIR -62 200 36 183 223 131 85 chr1 23020003 23020105 -219644248 - MIR3 SINE MIR -3 205 94 447 239 37 18 chr1 23020105 23020214 -219644139 + MER81 DNA DNA 4 114 0 183 223 131 85 chr1 23020214 23020241 -219644112 - MIR3 SINE MIR -114 94 70 2278 105 44 22 chr1 23020480 23020843 -219643510 - THE1C LTR MaLR -4 371 1 230 298 169 8 chr1 23020857 23020981 -219643372 - L2 LINE L2 -6 3266 3123 583 167 0 0 chr1 23021066 23021150 -219643203 + AluS SINE Alu 2 85 -227 2048 156 3 0 chr1 23021214 23021515 -219642838 + AluJb SINE Alu 1 302 -10 927 124 0 0 chr1 23021808 23021937 -219642416 - AluSq SINE Alu -48 265 137 2274 111 3 0 chr1 23021937 23022235 -219642118 - AluSx SINE Alu -13 299 1 1742 141 6 35 chr1 23022237 23022437 -219641916 - MER49 LTR ERV1 -20 903 714 2313 102 0 3 chr1 23022437 23022731 -219641622 + AluSq SINE Alu 1 293 -20 1742 141 6 35 chr1 23022731 23022843 -219641510 - MER49 LTR ERV1 -209 714 600 1052 179 0 0 chr1 23022844 23023006 -219641347 + FAM SINE Alu 1 162 -23 3029 130 35 58 chr1 23023017 23023291 -219641062 - MER49 LTR ERV1 -328 595 316 1734 143 63 37 chr1 23023291 23023591 -219640762 + AluJb SINE Alu 1 308 -4 3029 130 35 58 chr1 23023591 23023739 -219640614 - MER49 LTR ERV1 -607 316 166 2150 106 0 26 chr1 23023739 23024041 -219640312 - AluSx SINE Alu -18 294 1 3029 130 35 58 chr1 23024041 23024226 -219640127 - MER49 LTR ERV1 -757 166 1 245 254 0 0 chr1 23024307 23024366 -219639987 + MLT1I LTR MaLR 41 99 -310 1806 140 3 62 chr1 23024366 23024687 -219639666 + AluJb SINE Alu 1 302 -10 1538 188 13 40 chr1 23024702 23025006 -219639347 + AluJb SINE Alu 1 296 -16 591 215 68 6 chr1 23025092 23025255 -219639098 + MLT1I LTR MaLR 235 407 -2 539 308 67 20 chr1 23025369 23025422 -219638931 - L1ME3 LINE L1 -248 5914 5865 2107 126 36 0 chr1 23025422 23025600 -219638753 - AluSx SINE Alu 0 312 117 522 83 0 0 chr1 23025600 23025672 -219638681 + (TA)n Simple_repeat Simple_repeat 2 73 0 2107 126 36 0 chr1 23025672 23025794 -219638559 - AluSx SINE Alu -195 117 1 539 308 67 20 chr1 23025794 23026084 -219638269 - L1ME3 LINE L1 -297 5865 5555 1889 103 0 27 chr1 23026233 23026496 -219637857 - AluSx SINE Alu -20 292 37 2377 76 7 0 chr1 23027121 23027409 -219636944 - AluSg SINE Alu -20 290 1 2232 139 0 0 chr1 23027473 23027776 -219636577 + AluSx SINE Alu 1 303 -9 2559 72 3 0 chr1 23027781 23028087 -219636266 + AluSp SINE Alu 1 307 -6 1208 113 18 0 chr1 23028160 23028328 -219636025 + AluSq SINE Alu 132 302 -11 1752 90 5 0 chr1 23028354 23028576 -219635777 + AluSq SINE Alu 88 310 -3 2256 207 29 8 chr1 23028576 23029059 -219635294 + LTR65 LTR ERV1 171 663 -6 2170 142 3 0 chr1 23029076 23029379 -219634974 - AluSx SINE Alu -6 306 3 1951 152 3 10 chr1 23029382 23029684 -219634669 - AluJo SINE Alu -12 300 1 442 304 180 58 chr1 23029705 23029745 -219634608 - L2 LINE L2 0 3313 3279 2528 81 0 0 chr1 23029745 23030053 -219634300 - AluSq SINE Alu -5 308 1 442 304 180 58 chr1 23030053 23030065 -219634288 - L2 LINE L2 -34 3279 3270 2575 70 0 3 chr1 23030065 23030377 -219633976 - AluY SINE Alu 0 311 1 442 304 180 58 chr1 23030377 23030648 -219633705 - L2 LINE L2 -43 3270 3033 2127 138 0 0 chr1 23030648 23030937 -219633416 + AluSx SINE Alu 1 289 -23 2602 74 0 3 chr1 23030937 23031248 -219633105 + AluSq SINE Alu 1 310 -3 442 304 180 58 chr1 23031248 23031355 -219632998 - L2 LINE L2 -279 3034 2827 292 227 62 82 chr1 23031506 23031603 -219632750 - MIR3 SINE MIR -8 200 106 2192 102 0 0 chr1 23032034 23032319 -219632034 - AluSx SINE Alu -27 285 1 247 275 11 62 chr1 23032650 23032763 -219631590 - MIR SINE MIR -28 180 73 352 270 63 24 chr1 23033386 23033512 -219630841 + MIR SINE MIR 84 214 -48 2135 110 7 16 chr1 23033678 23033987 -219630366 - AluSx SINE Alu -6 306 1 2298 108 7 7 chr1 23034159 23034465 -219629888 + AluSx SINE Alu 2 307 -5 378 273 130 78 chr1 23034632 23035002 -219629351 - L1ME4a LINE L1 -12 6109 5721 2153 74 47 30 chr1 23035448 23035747 -219628606 + AluSc SINE Alu 1 304 -5 558 90 51 0 chr1 23036100 23036178 -219628175 - AluJb SINE Alu -10 302 221 870 124 39 0 chr1 23036178 23036307 -219628046 - AluJb SINE Alu -124 188 55 2541 73 0 0 chr1 23036307 23036608 -219627745 - AluSp SINE Alu -12 301 1 1122 88 0 0 chr1 23036609 23036745 -219627608 - AluSq/x SINE Alu -177 136 1 618 129 50 0 chr1 23036745 23036846 -219627507 - FAM SINE Alu -3 182 77 2019 149 7 0 chr1 23037010 23037305 -219627048 + AluSg SINE Alu 1 297 -13 207 0 0 0 chr1 23038440 23038463 -219625890 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr1 23038479 23038500 -219625853 + AT_rich Low_complexity Low_complexity 1 21 0 2423 75 3 0 chr1 23039369 23039663 -219624690 + AluY SINE Alu 1 295 -16 30 0 0 0 chr1 23039716 23039746 -219624607 + AT_rich Low_complexity Low_complexity 1 30 0 2310 67 42 3 chr1 23039748 23040032 -219624321 + AluY SINE Alu 1 295 -16 1776 138 80 4 chr1 23040211 23040487 -219623866 - AluSg SINE Alu -13 297 1 2414 99 0 0 chr1 23040752 23041056 -219623297 - AluSx SINE Alu -8 304 1 2275 106 10 0 chr1 23041058 23041350 -219623003 - AluSq SINE Alu -9 304 10 1908 173 0 7 chr1 23041358 23041659 -219622694 - AluJb SINE Alu -13 299 1 1170 163 31 66 chr1 23041692 23041919 -219622434 - MER20 DNA MER1_type 0 219 1 2378 101 0 0 chr1 23042064 23042362 -219621991 + AluSx SINE Alu 1 298 -14 2319 109 3 0 chr1 23042419 23042722 -219621631 + AluSp SINE Alu 1 304 -9 442 306 139 14 chr1 23042776 23042992 -219621361 - MIR SINE MIR -10 252 10 2332 99 0 10 chr1 23043039 23043352 -219621001 - AluSg SINE Alu 0 310 1 2343 65 7 7 chr1 23043580 23043870 -219620483 + AluY SINE Alu 1 290 -21 1746 149 30 4 chr1 23043883 23044151 -219620202 + AluJo SINE Alu 18 292 -20 274 176 11 11 chr1 23044151 23044242 -219620111 + (TA)n Simple_repeat Simple_repeat 2 92 0 2048 148 13 0 chr1 23044519 23044823 -219619530 + AluSx SINE Alu 1 308 -4 249 296 40 99 chr1 23045809 23045867 -219618486 + L2 LINE L2 2948 3008 -264 1497 163 81 8 chr1 23045867 23046125 -219618228 - AluJb SINE Alu -3 309 33 249 296 40 99 chr1 23046125 23046218 -219618135 + L2 LINE L2 3008 3090 -182 196 271 0 0 chr1 23046332 23046380 -219617973 + L2 LINE L2 3193 3240 -73 2588 74 0 0 chr1 23046450 23046759 -219617594 - AluY SINE Alu -2 309 1 2449 97 0 0 chr1 23046761 23047070 -219617283 - AluSc SINE Alu 0 309 1 280 294 44 0 chr1 23047544 23047612 -219616741 + MIR SINE MIR 67 137 -71 1792 184 7 0 chr1 23047833 23048138 -219616215 + AluJo SINE Alu 1 307 -5 1641 139 0 137 chr1 23048138 23048482 -219615871 + AluJb SINE Alu 1 297 -15 2368 96 0 16 chr1 23048484 23048787 -219615566 + AluSg SINE Alu 1 298 -12 556 256 19 13 chr1 23048820 23048976 -219615377 - L1ME3A LINE L1 -20 6150 5994 662 250 109 16 chr1 23049231 23049423 -219614930 + MIR SINE MIR 48 257 -5 2140 99 0 24 chr1 23049487 23049804 -219614549 - AluSx SINE Alu 0 312 5 2460 72 0 3 chr1 23049887 23050192 -219614161 - AluY SINE Alu -7 304 1 757 298 158 23 chr1 23050198 23050641 -219613712 - L2 LINE L2 -4 3309 2807 1287 124 33 19 chr1 23051162 23051372 -219612981 - AluJo SINE Alu -13 299 87 2167 111 21 0 chr1 23051377 23051665 -219612688 - AluSx SINE Alu -18 294 1 2048 123 22 0 chr1 23051675 23051978 -219612375 - AluSx SINE Alu 0 309 1 265 225 61 52 chr1 23052055 23052175 -219612178 - L1ME3 LINE L1 -81 6081 5961 1561 194 80 65 chr1 23053141 23053614 -219610739 + MLT2B1 LTR ERVL 1 480 -40 289 155 72 0 chr1 23053620 23053717 -219610636 + (TA)n Simple_repeat Simple_repeat 1 104 0 2165 129 3 0 chr1 23053740 23054042 -219610311 - AluSx SINE Alu -9 303 1 311 57 0 75 chr1 23054072 23054125 -219610228 + MLT2B1 LTR ERVL 472 520 0 1886 126 100 0 chr1 23054196 23054466 -219609887 - AluSg SINE Alu -13 297 1 251 336 18 18 chr1 23054466 23054579 -219609774 - L2 LINE L2 -528 2786 2674 2368 86 3 3 chr1 23054596 23054899 -219609454 - AluSc SINE Alu -6 303 1 1922 134 20 36 chr1 23054903 23055208 -219609145 - AluJb SINE Alu -10 302 3 2489 78 3 3 chr1 23055421 23055727 -219608626 + AluSx SINE Alu 2 307 -5 1468 266 105 21 chr1 23055833 23056349 -219608004 - MLT1K LTR MaLR -3 585 27 284 227 140 67 chr1 23056806 23056956 -219607397 + L1ME LINE L1 5713 5873 -248 941 76 0 69 chr1 23056970 23057101 -219607252 - FLAM_C SINE Alu -10 133 12 2197 113 10 0 chr1 23057138 23057429 -219606924 - AluSq SINE Alu -19 294 1 2174 115 0 32 chr1 23057429 23057741 -219606612 - AluSq SINE Alu -10 303 1 727 254 64 18 chr1 23057805 23058025 -219606328 + MIR SINE MIR 33 262 0 2377 101 0 10 chr1 23058052 23058360 -219605993 + AluSg SINE Alu 1 305 -5 2582 47 0 3 chr1 23058454 23058754 -219605599 - AluY SINE Alu -12 299 1 1717 156 32 7 chr1 23058955 23059275 -219605078 + AluJb SINE Alu 1 327 0 250 275 101 81 chr1 23059432 23059541 -219604812 + MIR SINE MIR 84 198 -64 2056 115 10 13 chr1 23059541 23059846 -219604507 + AluSx SINE Alu 1 304 -8 250 275 101 81 chr1 23059846 23059885 -219604468 + MIR SINE MIR 198 235 -27 219 308 8 0 chr1 23060317 23060437 -219603916 + G-rich Low_complexity Low_complexity 4 124 0 1393 117 0 93 chr1 23061608 23061865 -219602488 - AluJb SINE Alu -16 296 64 25 0 0 0 chr1 23062232 23062257 -219602096 + AT_rich Low_complexity Low_complexity 1 25 0 294 29 0 0 chr1 23062300 23062335 -219602018 + (TA)n Simple_repeat Simple_repeat 1 35 0 2695 51 0 0 chr1 23062354 23062665 -219601688 - AluY SINE Alu 0 311 1 1744 168 14 7 chr1 23062903 23063195 -219601158 - AluJb SINE Alu -13 299 6 473 284 39 0 chr1 23063467 23063594 -219600759 + L2 LINE L2 3182 3313 0 998 235 45 20 chr1 23064438 23064685 -219599668 + MIR SINE MIR 7 259 -3 2233 120 3 0 chr1 23064797 23065096 -219599257 - AluSp SINE Alu -13 300 1 2266 97 0 16 chr1 23065133 23065441 -219598912 - AluSx SINE Alu -9 303 1 394 277 226 7 chr1 23065509 23065646 -219598707 + MER5A DNA MER1_type 14 180 -9 2241 89 3 54 chr1 23065898 23066211 -219598142 - AluSp SINE Alu -16 297 1 1648 171 9 35 chr1 23066221 23066537 -219597816 - AluJo SINE Alu -4 308 1 1312 65 0 0 chr1 23066541 23066695 -219597658 - AluSp SINE Alu -16 297 144 2365 84 14 0 chr1 23066959 23067256 -219597097 - AluSx SINE Alu -11 301 1 2161 112 20 0 chr1 23067472 23067768 -219596585 + AluSx SINE Alu 1 302 -10 2508 78 0 3 chr1 23068537 23068843 -219595510 + AluSq SINE Alu 1 305 -8 2309 82 0 52 chr1 23068945 23069273 -219595080 - AluSx SINE Alu -1 311 1 2228 120 10 3 chr1 23069339 23069648 -219594705 - AluSx SINE Alu -1 311 1 764 129 0 79 chr1 23070018 23070178 -219594175 + FLAM_C SINE Alu 5 153 0 190 261 65 0 chr1 23070754 23070800 -219593553 + L2 LINE L2 3215 3263 -9 2121 113 3 3 chr1 23071140 23071432 -219592921 - AluSx SINE Alu -20 292 1 1836 154 7 17 chr1 23071705 23072003 -219592350 - AluSx SINE Alu -17 295 1 1873 96 38 45 chr1 23072101 23072392 -219591961 - AluSx SINE Alu -15 297 9 297 216 91 23 chr1 23072475 23072563 -219591790 - MIR SINE MIR -87 175 82 331 322 122 22 chr1 23072968 23073148 -219591205 - MIR SINE MIR -16 246 49 1792 114 12 4 chr1 23073206 23073452 -219590901 - AluSx SINE Alu -44 268 21 936 188 0 0 chr1 23073645 23073799 -219590554 + AluSg/x SINE Alu 141 294 -18 406 310 74 28 chr1 23073978 23074194 -219590159 - L2 LINE L2 -146 3167 2930 1896 99 4 0 chr1 23074194 23074436 -219589917 + AluSp SINE Alu 1 243 -70 406 310 74 28 chr1 23074436 23074545 -219589808 - L2 LINE L2 -383 2930 2827 1599 175 31 64 chr1 23074576 23074730 -219589623 - MLT1A1 LTR MaLR -4 361 203 1611 99 43 96 chr1 23074730 23075053 -219589300 - AluSx SINE Alu -2 310 5 1599 175 31 64 chr1 23075053 23075258 -219589095 - MLT1A1 LTR MaLR -162 203 14 724 183 0 28 chr1 23075366 23075508 -219588845 + AluJb SINE Alu 159 296 -16 388 233 41 48 chr1 23076365 23076511 -219587842 + L2 LINE L2 3169 3313 0 2365 105 3 0 chr1 23076583 23076888 -219587465 - AluSx SINE Alu -6 306 1 1581 175 7 38 chr1 23076888 23077179 -219587174 - AluJb SINE Alu -30 282 1 1638 190 23 16 chr1 23077190 23077500 -219586853 - AluSx SINE Alu 0 312 1 4465 56 27 34 chr1 23077544 23077864 -219586489 + LTR10C LTR ERV1 1 317 -274 2468 93 0 3 chr1 23077864 23078176 -219586177 - AluY SINE Alu 0 311 1 4465 56 27 34 chr1 23078176 23078445 -219585908 + LTR10C LTR ERV1 317 586 -5 2625 51 0 3 chr1 23078445 23078756 -219585597 - AluY SINE Alu -1 310 1 1596 212 137 90 chr1 23079278 23079504 -219584849 - MER21B LTR ERV1 -150 713 499 2557 72 0 0 chr1 23079504 23079809 -219584544 - AluY SINE Alu -6 305 1 1596 212 137 90 chr1 23079809 23080246 -219584107 - MER21B LTR ERV1 -364 499 19 2418 100 0 7 chr1 23080667 23080977 -219583376 + AluSx SINE Alu 1 308 -4 1769 153 40 0 chr1 23081089 23081363 -219582990 - AluJo SINE Alu -27 285 1 2193 110 0 13 chr1 23081479 23081787 -219582566 - AluY SINE Alu -6 305 2 652 168 18 9 chr1 23082013 23082126 -219582227 - AluJb SINE Alu -194 118 5 2067 166 81 75 chr1 23082137 23082644 -219581709 - LTR54 LTR ERV1 0 510 1 461 250 10 0 chr1 23082773 23082869 -219581484 + MER2 DNA MER2_type 2 98 -247 594 246 89 30 chr1 23083038 23083241 -219581112 - MIR SINE MIR -2 260 46 1849 117 8 0 chr1 23083590 23083838 -219580515 + AluSx SINE Alu 1 250 -62 204 40 0 0 chr1 23083839 23083864 -219580489 + (CA)n Simple_repeat Simple_repeat 2 26 0 879 245 30 17 chr1 23083867 23084104 -219580249 + MIR SINE MIR 23 262 0 1633 148 10 61 chr1 23084271 23084582 -219579771 + AluJb SINE Alu 1 295 -17 34 24 0 0 chr1 23084897 23084938 -219579415 + AT_rich Low_complexity Low_complexity 1 41 0 301 202 143 0 chr1 23085043 23085127 -219579226 - HsTC2 DNA Tc2 -1795 103 8 2333 93 13 13 chr1 23086539 23086851 -219577502 - AluSx SINE Alu 0 312 1 283 257 49 109 chr1 23087494 23087677 -219576676 - MIR3 SINE MIR -6 202 31 2217 121 0 0 chr1 23088301 23088590 -219575763 + AluSg SINE Alu 1 289 -21 2410 89 0 3 chr1 23090288 23090592 -219573761 - AluSp SINE Alu -9 304 2 2188 121 0 7 chr1 23090733 23091031 -219573322 + AluSx SINE Alu 1 296 -16 477 161 0 0 chr1 23091125 23091206 -219573147 - L1M4 LINE L1 -1251 4895 4815 3019 195 77 54 chr1 23091216 23092362 -219571991 - L1MB5 LINE L1 -175 5999 4808 2265 128 0 0 chr1 23092362 23092667 -219571686 + AluSx SINE Alu 1 305 -7 3019 195 77 54 chr1 23092667 23093135 -219571218 - L1MB5 LINE L1 -1366 4808 4353 2084 111 0 0 chr1 23093275 23093537 -219570816 - AluSx SINE Alu -29 283 22 180 0 0 0 chr1 23099206 23099226 -219565127 + (T)n Simple_repeat Simple_repeat 1 20 0 310 280 27 0 chr1 23100726 23100801 -219563552 - MER5B DNA MER1_type -99 79 3 2831 10 0 0 chr1 23101707 23102009 -219562344 - AluY SINE Alu -9 302 1 2467 72 0 0 chr1 23102690 23102981 -219561372 - AluY SINE Alu -20 291 1 252 0 0 0 chr1 23103361 23103389 -219560964 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1903 136 0 4 chr1 23103391 23103671 -219560682 - AluSg SINE Alu -31 279 1 271 182 76 15 chr1 23104119 23104185 -219560168 - MER91B DNA MER1_type -2 188 119 295 252 57 89 chr1 23104225 23104348 -219560005 - MER91B DNA MER1_type -60 130 12 221 305 50 57 chr1 23104483 23104624 -219559729 - MIR3 SINE MIR -42 166 27 2028 105 54 0 chr1 23104678 23104954 -219559399 - AluSx SINE Alu -21 291 1 268 243 29 78 chr1 23105765 23105868 -219558485 - MER5A DNA MER1_type -74 115 18 27 0 0 0 chr1 23106008 23106035 -219558318 + AT_rich Low_complexity Low_complexity 1 27 0 1889 135 17 0 chr1 23106178 23106466 -219557887 - AluJb SINE Alu -19 293 1 328 258 55 16 chr1 23106713 23106841 -219557512 - MIR SINE MIR -14 248 116 453 205 144 107 chr1 23107192 23107407 -219556946 - MIR SINE MIR -18 244 22 231 167 0 0 chr1 23107415 23107457 -219556896 + T-rich Low_complexity Low_complexity 1 42 0 468 301 66 0 chr1 23107837 23108020 -219556333 + MIR SINE MIR 49 243 -19 190 182 0 68 chr1 23107986 23108030 -219556323 + L2 LINE L2 3214 3254 -18 * 319 252 122 26 chr1 23108649 23108764 -219555589 + MIR SINE MIR 20 145 -63 2343 88 0 7 chr1 23109279 23109575 -219554778 - AluSp SINE Alu -19 294 1 326 280 119 18 chr1 23109841 23110009 -219554344 + MIR SINE MIR 1 185 -77 799 248 92 0 chr1 23110212 23110418 -219553935 + MIR SINE MIR 2 226 -36 2664 65 23 54 chr1 23111381 23111768 -219552585 - THE1C LTR MaLR 0 375 1 256 217 133 42 chr1 23111779 23111899 -219552454 - L2 LINE L2 -66 3247 3117 2053 170 76 46 chr1 23112272 23112771 -219551582 - L1MB8 LINE L1 -5 6173 5660 331 275 128 0 chr1 23112986 23113130 -219551223 + MIR SINE MIR 50 210 -52 23 33 0 0 chr1 23113563 23113593 -219550760 + AT_rich Low_complexity Low_complexity 1 30 0 185 290 166 10 chr1 23114493 23114651 -219549702 - MIR SINE MIR -64 144 4 2409 97 0 0 chr1 23115002 23115310 -219549043 - AluSg SINE Alu -2 308 1 325 285 99 20 chr1 23115359 23115510 -219548843 + MIR SINE MIR 26 188 -74 498 234 154 27 chr1 23117094 23117282 -219547071 - MIR SINE MIR -2 260 49 290 94 19 38 chr1 23117565 23117618 -219546735 + AluSc SINE Alu 80 131 -168 510 143 0 0 chr1 23117629 23117699 -219546654 - AluJo/FRAM SINE Alu -31 281 212 2206 105 0 7 chr1 23117699 23117995 -219546358 - AluSg SINE Alu -11 299 6 2520 65 0 10 chr1 23118231 23118537 -219545816 + AluY SINE Alu 1 303 -8 247 198 68 9 chr1 23120475 23120558 -219543795 + MIR SINE MIR 87 142 -66 2036 132 3 7 chr1 23120962 23121257 -219543096 + AluSx SINE Alu 1 294 -18 413 299 22 15 chr1 23123503 23123640 -219540713 - MIR SINE MIR -118 144 7 1064 229 0 0 chr1 23123668 23123878 -219540475 - AluJb SINE Alu -9 303 94 235 280 129 32 chr1 23126327 23126420 -219537933 + MIR SINE MIR 156 257 -5 468 35 0 0 chr1 23126584 23126642 -219537711 + (TG)n Simple_repeat Simple_repeat 2 59 0 364 316 281 0 chr1 23129179 23129350 -219535003 - MIR SINE MIR -34 228 10 249 274 88 29 chr1 23129391 23129493 -219534860 - MIR SINE MIR -68 140 33 292 348 8 17 chr1 23129691 23129809 -219534544 - MIR SINE MIR -110 152 36 1011 239 56 16 chr1 23130904 23131155 -219533198 - MIR SINE MIR 0 262 2 307 374 63 44 chr1 23131218 23131488 -219532865 - L3b LINE CR1 -196 1387 1113 203 314 38 31 chr1 23131714 23131873 -219532480 + L2 LINE L2 2885 3044 -228 340 340 106 11 chr1 23131920 23132108 -219532245 - MIR SINE MIR -37 225 20 301 272 184 15 chr1 23132454 23132590 -219531763 + MIR SINE MIR 1 159 -103 193 234 21 0 chr1 23133032 23133079 -219531274 - MIR3 SINE MIR -9 199 152 338 209 48 38 chr1 23133366 23133471 -219530882 - L2 LINE L2 -6 3307 3202 310 348 52 32 chr1 23133725 23133912 -219530441 - MIR SINE MIR -51 211 16 353 352 16 0 chr1 23134197 23134322 -219530031 - MIR SINE MIR -50 212 86 502 219 6 43 chr1 23135024 23135188 -219529165 + L1MC4 LINE L1 7882 8039 -3 237 301 86 43 chr1 23135871 23136034 -219528319 + L2 LINE L2 2936 3105 -167 541 148 16 94 chr1 23136057 23136121 -219528232 + MIR SINE MIR 10 61 -201 2395 71 0 3 chr1 23136121 23136432 -219527921 - AluY SINE Alu -1 310 1 541 148 16 94 chr1 23136432 23136495 -219527858 + MIR SINE MIR 61 127 -135 330 318 15 38 chr1 23136588 23136720 -219527633 + MIR3 SINE MIR 3 131 -77 249 189 57 0 chr1 23138047 23138100 -219526253 + MIR SINE MIR 94 149 -59 498 216 133 55 chr1 23138336 23138517 -219525836 - MIR SINE MIR -39 223 29 254 285 234 0 chr1 23138536 23138694 -219525659 + L3 LINE CR1 1297 1491 -86 216 316 13 13 chr1 23138711 23138787 -219525566 - MER5A DNA MER1_type -4 185 110 242 314 66 29 chr1 23138993 23139130 -219525223 + MIR SINE MIR 113 254 -8 228 351 43 0 chr1 23139798 23139892 -219524461 + MIR3 SINE MIR 70 167 -41 413 218 59 15 chr1 23140411 23140542 -219523811 - MIR SINE MIR -62 146 15 209 339 34 0 chr1 23140589 23140648 -219523705 + L2 LINE L2 3198 3258 -14 321 270 212 1 chr1 23141921 23142087 -219522266 + MIR3 SINE MIR 2 196 -54 331 300 73 9 chr1 23142722 23142832 -219521521 - MIR SINE MIR -117 145 29 202 333 0 0 chr1 23144082 23144136 -219520217 + MIR SINE MIR 43 96 -112 323 238 10 50 chr1 23145389 23145490 -219518863 - L2 LINE L2 -1 3271 3175 267 238 32 0 chr1 23145611 23145674 -219518679 + MIR SINE MIR 58 122 -86 788 210 45 25 chr1 23145802 23146002 -219518351 + MER20 DNA MER1_type 16 219 0 488 271 42 9 chr1 23146696 23146896 -219517457 - MIR SINE MIR -33 229 26 269 186 198 23 chr1 23147064 23147150 -219517203 - MIR SINE MIR -76 132 32 273 191 101 4 chr1 23147689 23147770 -219516583 + MIR SINE MIR 54 139 -69 404 171 171 38 chr1 23148487 23148592 -219515761 + MIR SINE MIR 27 145 -63 205 51 51 0 chr1 23148668 23148707 -219515646 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 2021 60 0 0 chr1 23199301 23199551 -219464802 + AluSg SINE Alu 59 308 -2 404 219 143 8 chr1 23199758 23199877 -219464476 - MIR SINE MIR -108 154 20 314 293 66 14 chr1 23200053 23200199 -219464154 + MIR3 SINE MIR 28 186 -22 457 222 10 48 chr1 23200498 23200603 -219463750 + MLT1I LTR MaLR 38 174 -277 272 291 19 19 chr1 23200692 23200795 -219463558 + MLT1I LTR MaLR 304 406 -3 234 150 0 0 chr1 23200873 23200913 -219463440 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 204 280 20 20 chr1 23201034 23201134 -219463219 + L2 LINE L2 2973 3072 -200 462 223 151 59 chr1 23201619 23201857 -219462496 + MIR SINE MIR 2 261 -1 2267 93 0 3 chr1 23202046 23202348 -219462005 + AluSg SINE Alu 1 301 -9 2200 72 0 10 chr1 23202350 23202682 -219461671 + AluY SINE Alu 1 311 0 416 347 42 28 chr1 23202725 23202938 -219461415 - MIR SINE MIR -27 235 20 221 240 240 21 chr1 23203363 23203459 -219460894 - MIR SINE MIR -63 145 29 796 65 0 9 chr1 23203466 23203600 -219460753 - SVA Other Other 0 1386 1279 557 298 125 48 chr1 23204396 23204644 -219459709 + L2 LINE L2 3003 3269 -3 207 255 216 0 chr1 23204669 23204771 -219459582 - MER5A DNA MER1_type 0 189 66 684 251 100 13 chr1 23205164 23205403 -219458950 + MER115 DNA AcHobo 116 375 -318 1509 182 176 21 chr1 23205656 23205996 -219458357 - MSTD LTR MaLR 0 396 4 223 302 269 11 chr1 23206013 23206195 -219458158 - MIR SINE MIR -12 250 22 228 253 55 33 chr1 23207315 23207406 -219456947 - MIR SINE MIR -82 126 34 341 286 82 41 chr1 23208090 23208261 -219456092 - L2 LINE L2 -1 3271 3094 2043 118 0 55 chr1 23208655 23208985 -219455368 + AluSx SINE Alu 1 312 0 261 259 0 0 chr1 23208993 23209051 -219455302 - L2 LINE L2 -208 3064 3007 1865 122 35 65 chr1 23209059 23209428 -219454925 - THE1B LTR MaLR -6 358 1 811 345 36 21 chr1 23209504 23209893 -219454460 - L2 LINE L2 -481 2833 2439 377 240 10 34 chr1 23209906 23209938 -219454415 - MIR SINE MIR -60 148 117 2284 104 0 0 chr1 23209938 23210237 -219454116 - AluSq SINE Alu -14 299 1 377 240 10 34 chr1 23210237 23210333 -219454020 - MIR SINE MIR -91 117 58 201 304 226 9 chr1 23211345 23211460 -219452893 + MIR SINE MIR 76 215 -47 1823 124 27 40 chr1 23211556 23211854 -219452499 + AluJo SINE Alu 1 294 -18 248 263 0 66 chr1 23211871 23211947 -219452406 + L2 LINE L2 3199 3269 -3 346 304 113 43 chr1 23212007 23212237 -219452116 + MIR SINE MIR 12 257 -5 243 286 229 0 chr1 23212344 23212449 -219451904 + MLT1K LTR MaLR 102 230 -358 460 262 91 27 chr1 23212493 23212680 -219451673 + MLT1K LTR MaLR 373 571 -17 270 252 37 19 chr1 23213332 23213439 -219450914 + LTR67 LTR ERVL 449 557 0 506 238 34 14 chr1 23213893 23214040 -219450313 + MLT1K LTR MaLR 110 259 -329 411 351 84 44 chr1 23214194 23214468 -219449885 - L2 LINE L2 -9 3263 2969 2122 114 0 10 chr1 23214468 23214767 -219449586 + AluSx SINE Alu 1 296 -16 411 351 84 44 chr1 23214767 23214859 -219449494 - L2 LINE L2 -303 2969 2882 481 287 35 14 chr1 23215147 23215290 -219449063 - MER5B DNA MER1_type 0 178 33 894 212 0 0 chr1 23215290 23215460 -219448893 - FRAM SINE Alu -7 169 1 294 217 61 87 chr1 23215526 23215618 -219448735 - Charlie8 DNA MER1_type -132 198 108 2142 52 0 31 chr1 23215618 23215904 -219448449 - AluY SINE Alu 0 311 35 294 217 61 87 chr1 23215904 23215926 -219448427 - Charlie8 DNA MER1_type -222 108 87 726 272 27 2 chr1 23215978 23216171 -219448182 - MIR SINE MIR -58 150 1 503 282 77 10 chr1 23216806 23217001 -219447352 - MIR SINE MIR -12 250 43 2096 103 0 14 chr1 23217420 23217712 -219446641 + AluSg SINE Alu 2 289 -21 249 170 57 0 chr1 23218310 23218363 -219445990 + CT-rich Low_complexity Low_complexity 3 58 0 1190 169 15 5 chr1 23218953 23219206 -219445147 + L1MB3 LINE L1 5762 5984 -199 552 322 57 1 chr1 23219559 23219793 -219444560 + MIR SINE MIR 15 262 0 735 235 24 25 chr1 23219850 23220053 -219444300 + MIR SINE MIR 46 256 -6 304 319 51 6 chr1 23220096 23220253 -219444100 + MIR3 SINE MIR 3 166 -42 22 0 0 0 chr1 23220916 23220938 -219443415 + AT_rich Low_complexity Low_complexity 1 22 0 235 335 46 31 chr1 23221121 23221315 -219443038 - L2 LINE L2 -482 2832 2636 283 265 128 10 chr1 23221672 23221774 -219442579 - MIR SINE MIR -63 145 32 * 357 232 70 2 chr1 23221725 23221838 -219442515 + MIR SINE MIR 28 145 -63 468 325 103 14 chr1 23222082 23222374 -219441979 + L2 LINE L2 569 886 -2428 768 259 110 59 chr1 23223128 23223584 -219440769 + MLT1J LTR MaLR 24 502 -9 456 296 146 46 chr1 23223610 23224042 -219440311 + L2 LINE L2 2035 2509 -805 3462 145 70 39 chr1 23224055 23224441 -219439912 + L1MB3 LINE L1 5444 5864 -319 2367 79 0 0 chr1 23224441 23224732 -219439621 + AluY SINE Alu 21 311 0 3462 145 70 39 chr1 23224732 23225063 -219439290 + L1MB3 LINE L1 5864 6183 0 1419 131 4 49 chr1 23225073 23225318 -219439035 - AluSq SINE Alu -6 307 74 2121 105 6 62 chr1 23225318 23225641 -219438712 - AluSx SINE Alu -7 305 1 231 357 56 25 chr1 23225699 23225985 -219438368 + L2 LINE L2 2600 2894 -420 625 164 0 0 chr1 23226446 23226550 -219437803 + AluSp/q SINE Alu 192 295 -18 385 299 126 10 chr1 23226610 23226817 -219437536 - MIR SINE MIR -11 251 21 197 289 0 72 chr1 23227201 23227284 -219437069 + MIR SINE MIR 68 144 -118 189 0 0 0 chr1 23227284 23227305 -219437048 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 479 139 0 0 chr1 23227316 23227388 -219436965 - AluJo SINE Alu -30 282 211 1015 182 5 64 chr1 23227458 23227678 -219436675 - AluJo SINE Alu -105 207 1 2158 113 25 0 chr1 23227978 23228262 -219436091 + AluSx SINE Alu 1 291 -21 323 267 30 111 chr1 23228263 23228398 -219435955 + L1MC4 LINE L1 6558 6681 -1361 200 289 0 26 chr1 23228611 23228687 -219435666 - MIR SINE MIR -86 122 49 275 71 24 0 chr1 23228691 23228733 -219435620 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 340 295 134 0 chr1 23228803 23228952 -219435401 - MIR SINE MIR -79 183 15 190 160 40 0 chr1 23229570 23229620 -219434733 + CT-rich Low_complexity Low_complexity 1 52 0 362 327 48 18 chr1 23229626 23229794 -219434559 + MIR SINE MIR 2 174 -88 369 283 90 36 chr1 23230037 23230203 -219434150 + MER5A DNA MER1_type 15 189 0 1858 136 0 70 chr1 23230363 23230525 -219433828 - AluJb SINE Alu -18 294 163 2091 123 3 13 chr1 23230525 23230825 -219433528 - AluSx SINE Alu -15 297 1 1858 136 0 70 chr1 23230825 23230978 -219433375 - AluJb SINE Alu -149 163 1 224 79 26 0 chr1 23231114 23231152 -219433201 + MIR SINE MIR 112 150 -112 195 261 0 0 chr1 23231219 23231265 -219433088 - L2 LINE L2 -17 3255 3210 * 347 302 58 0 chr1 23231242 23231381 -219432972 - MIR SINE MIR -34 228 82 261 291 0 38 chr1 23231442 23231521 -219432832 + C-rich Low_complexity Low_complexity 4 79 0 2404 108 0 0 chr1 23231763 23232068 -219432285 - AluSx SINE Alu -7 305 1 209 169 102 17 chr1 23232115 23232174 -219432179 - L2 LINE L2 -14 3258 3195 295 294 11 11 chr1 23232555 23232647 -219431706 + L2 LINE L2 2970 3061 -211 181 328 16 0 chr1 23233495 23233559 -219430794 + L2 LINE L2 3206 3270 -2 1065 217 43 4 chr1 23233677 23233907 -219430446 - MIR SINE MIR -18 244 6 269 353 140 14 chr1 23234604 23234825 -219429528 + MIR SINE MIR 14 262 0 1187 228 161 21 chr1 23234885 23235271 -219429082 + MLT1K LTR MaLR 146 585 -3 231 282 245 37 chr1 23235471 23235826 -219428527 - L2 LINE L2 0 3272 2844 2427 253 63 41 chr1 23236137 23236270 -219428083 - L1ME3A LINE L1 -91 6079 5950 2251 120 0 0 chr1 23236270 23236569 -219427784 - AluSx SINE Alu -13 299 1 2427 253 63 41 chr1 23236569 23237106 -219427247 - L1ME3A LINE L1 -220 5950 5426 2524 66 0 10 chr1 23237106 23237410 -219426943 - AluY SINE Alu -10 301 1 2427 253 63 41 chr1 23237410 23237488 -219426865 - L1ME3A LINE L1 -744 5426 5351 2404 86 0 3 chr1 23237488 23237790 -219426563 - AluSx SINE Alu -11 301 1 2427 253 63 41 chr1 23237790 23238290 -219426063 - L1ME3A LINE L1 -819 5351 4863 1903 167 0 3 chr1 23238290 23238583 -219425770 - AluJb SINE Alu -20 292 1 2427 253 63 41 chr1 23238583 23238764 -219425589 - L1ME3A LINE L1 -1307 4863 4610 405 0 0 0 chr1 23238764 23238809 -219425544 + (CA)n Simple_repeat Simple_repeat 1 45 0 2427 253 63 41 chr1 23238809 23238897 -219425456 - L1ME3A LINE L1 -1560 4610 4525 1708 122 0 0 chr1 23239032 23239262 -219425091 + AluSg/x SINE Alu 74 303 -7 2074 109 3 14 chr1 23239390 23239698 -219424655 - AluSx SINE Alu 0 305 1 667 257 85 18 chr1 23239699 23239971 -219424382 - L1ME4a LINE L1 -243 5878 5589 180 254 48 16 chr1 23239982 23240045 -219424308 - MIR SINE MIR -125 83 19 1814 159 3 39 chr1 23240450 23240758 -219423595 - AluJo SINE Alu -15 297 1 285 288 42 34 chr1 23240767 23240885 -219423468 + MIR SINE MIR 74 192 -70 333 333 0 9 chr1 23241841 23241955 -219422398 + MIR SINE MIR 54 166 -96 5420 176 31 45 chr1 23242024 23242572 -219421781 - L1MC2 LINE L1 -8 6336 5782 2430 100 3 0 chr1 23242572 23242881 -219421472 - AluSg SINE Alu 0 310 1 5420 176 31 45 chr1 23242881 23244757 -219419596 - L1MC2 LINE L1 -562 5782 3960 429 20 0 0 chr1 23244757 23244807 -219419546 + (TG)n Simple_repeat Simple_repeat 2 51 0 5420 176 31 45 chr1 23244807 23244842 -219419511 - L1MC2 LINE L1 -2384 3960 3926 227 259 123 0 chr1 23244850 23244931 -219419422 + MIR SINE MIR 162 252 -10 1030 207 55 17 chr1 23244954 23245191 -219419162 + MIR SINE MIR 17 262 0 227 213 0 0 chr1 23245193 23245240 -219419113 + (TTA)n Simple_repeat Simple_repeat 1 47 0 415 298 209 0 chr1 23245310 23245468 -219418885 + MIR SINE MIR 38 228 -34 2318 102 3 22 chr1 23245482 23245795 -219418558 - AluSp SINE Alu -6 307 1 237 65 0 0 chr1 23245797 23245828 -219418525 + (TTA)n Simple_repeat Simple_repeat 2 32 0 327 203 114 0 chr1 23245940 23246019 -219418334 + L3 LINE CR1 1382 1469 -108 2300 114 0 16 chr1 23246138 23246455 -219417898 + AluSx SINE Alu 1 312 0 334 294 24 24 chr1 23246628 23246754 -219417599 - MIR SINE MIR -58 150 25 561 355 28 47 chr1 23247032 23247204 -219417149 - L2 LINE L2 0 3272 3107 1347 211 147 20 chr1 23247204 23247598 -219416755 - MLT1J2 LTR MaLR -4 446 3 561 355 28 47 chr1 23247598 23247743 -219416610 - L2 LINE L2 -165 3107 2961 935 212 26 0 chr1 23248190 23248383 -219415970 + MER58A DNA MER1_type 27 224 0 231 358 84 0 chr1 23248736 23248831 -219415522 - MIR SINE MIR -71 191 89 183 277 46 15 chr1 23249392 23249457 -219414896 + L2 LINE L2 3247 3313 0 279 79 0 0 chr1 23249723 23249761 -219414592 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 197 65 32 0 chr1 23250135 23250166 -219414187 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 2514 61 3 0 chr1 23250172 23250469 -219413884 - AluY SINE Alu -13 298 1 218 200 0 20 chr1 23250684 23250734 -219413619 - MIR SINE MIR -137 125 77 217 258 134 10 chr1 23252495 23252592 -219411761 - MIR SINE MIR -73 189 81 835 265 117 31 chr1 23253236 23253682 -219410671 - L2 LINE L2 -23 3290 2807 352 301 115 19 chr1 23253703 23253859 -219410494 - MIR3 SINE MIR -9 199 29 307 263 148 38 chr1 23253895 23254104 -219410249 - MIR SINE MIR 0 262 31 1702 144 58 7 chr1 23255404 23255681 -219408672 - AluJo SINE Alu -9 303 13 2278 114 0 0 chr1 23255702 23256023 -219408330 - AluSg SINE Alu 0 310 1 331 364 66 28 chr1 23256199 23256518 -219407835 + L2 LINE L2 2941 3271 -1 293 284 84 44 chr1 23257304 23257579 -219406774 + HAL1b LINE L1 668 953 -395 303 309 97 33 chr1 23257757 23258301 -219406052 + L1MC4a LINE L1 2904 3482 -2664 1089 271 104 66 chr1 23258398 23258568 -219405785 + L1MC4a LINE L1 5255 5417 -2391 2071 137 3 13 chr1 23258568 23258881 -219405472 - AluSx SINE Alu -2 310 1 1089 271 104 66 chr1 23258881 23259393 -219404960 + L1MC4a LINE L1 5417 5963 -1845 23 0 0 0 chr1 23259514 23259537 -219404816 + AT_rich Low_complexity Low_complexity 1 23 0 1665 105 0 4 chr1 23259586 23259814 -219404539 + AluSg/x SINE Alu 84 310 0 1097 237 123 26 chr1 23260690 23261153 -219403200 - MLT1E2 LTR MaLR -88 542 57 588 313 71 18 chr1 23261227 23261451 -219402902 - MIR SINE MIR 0 262 27 2283 116 0 10 chr1 23261453 23261755 -219402598 - AluSq SINE Alu -14 299 1 565 307 32 0 chr1 23262657 23262846 -219401507 + MIR SINE MIR 47 241 -21 455 317 116 25 chr1 23262862 23263380 -219400973 + L2 LINE L2 2100 2664 -650 271 218 27 82 chr1 23263402 23263512 -219400841 + L2 LINE L2 2871 2974 -298 249 325 112 10 chr1 23263614 23263807 -219400546 + MIR SINE MIR 30 246 -16 1487 138 54 62 chr1 23264077 23264115 -219400238 - AluJb SINE Alu -3 309 272 2470 92 0 0 chr1 23264115 23264419 -219399934 - AluSx SINE Alu -8 304 1 1487 138 54 62 chr1 23264419 23264656 -219399697 - AluJb SINE Alu -40 272 36 460 252 99 13 chr1 23264752 23264903 -219399450 - MIR SINE MIR -56 206 43 868 231 41 0 chr1 23265356 23265551 -219398802 + MER63A DNA MER1_type 1 203 -7 414 0 0 0 chr1 23266011 23266057 -219398296 + (CA)n Simple_repeat Simple_repeat 1 46 0 452 265 145 5 chr1 23266754 23266938 -219397415 + MIR SINE MIR 38 246 -16 216 265 0 0 chr1 23266971 23267020 -219397333 + (TG)n Simple_repeat Simple_repeat 1 49 0 438 237 111 15 chr1 23267065 23267200 -219397153 + MIR SINE MIR 82 229 -33 221 304 0 14 chr1 23267619 23267688 -219396665 - MIR SINE MIR -121 141 74 204 380 56 26 chr1 23267795 23267990 -219396363 + L2 LINE L2 2698 2898 -416 239 321 55 18 chr1 23268114 23268223 -219396130 + L2 LINE L2 3133 3245 -27 272 217 87 0 chr1 23268541 23268610 -219395743 - MIR SINE MIR -98 164 90 2525 152 124 21 chr1 23268745 23269259 -219395094 + MLT1F1 LTR MaLR 1 567 0 1071 230 91 19 chr1 23269269 23269651 -219394702 + L1ME3A LINE L1 5731 6161 -1 252 291 70 38 chr1 23270406 23270564 -219393789 + L2 LINE L2 2854 3016 -256 1344 144 22 121 chr1 23270565 23270651 -219393702 + AluYb8 SINE Alu 36 129 -189 207 0 0 0 chr1 23270651 23270674 -219393679 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1344 144 22 121 chr1 23270674 23270900 -219393453 + AluYb8 SINE Alu 129 317 -1 254 344 32 45 chr1 23270978 23271135 -219393218 + L2 LINE L2 3159 3313 0 278 234 39 0 chr1 23271254 23271331 -219393022 - MIR SINE MIR -108 154 75 1143 48 24 12 chr1 23271456 23271622 -219392731 + (TTTC)n Simple_repeat Simple_repeat 2 169 0 2073 116 11 0 chr1 23271626 23271902 -219392451 - AluSx SINE Alu -33 279 1 299 308 23 8 chr1 23271969 23272101 -219392252 - MIR3 SINE MIR -2 206 71 207 219 0 0 chr1 23272088 23272129 -219392224 + L2 LINE L2 3231 3271 -1 * 561 197 8 8 chr1 23272247 23272364 -219391989 - MIR SINE MIR -98 164 48 197 147 0 0 chr1 23273150 23273184 -219391169 + MIR SINE MIR 110 143 -65 209 266 138 32 chr1 23273222 23273316 -219391037 - MER5A DNA MER1_type -62 127 24 504 338 26 13 chr1 23273828 23274059 -219390294 - MIR SINE MIR -28 234 1 405 227 11 0 chr1 23274185 23274273 -219390080 - MIR SINE MIR -109 153 65 1001 263 30 13 chr1 23274278 23274579 -219389774 - LTR16C LTR ERVL 0 491 186 503 226 8 0 chr1 23274724 23274857 -219389496 + (TCCA)n Simple_repeat Simple_repeat 4 137 0 1006 178 10 0 chr1 23274881 23275500 -219388853 + (TCCA)n Simple_repeat Simple_repeat 1 625 0 428 280 59 37 chr1 23276064 23276294 -219388059 - MIR SINE MIR -15 247 9 505 303 10 27 chr1 23276527 23276705 -219387648 + MIR SINE MIR 38 212 -50 257 343 62 38 chr1 23277478 23277688 -219386665 + MIR SINE MIR 48 262 0 297 296 44 30 chr1 23277779 23277914 -219386439 - MIR3 SINE MIR -69 139 3 216 282 103 0 chr1 23278550 23278628 -219385725 + MIR SINE MIR 107 192 -70 773 244 51 0 chr1 23278807 23279004 -219385349 - MER63B DNA MER1_type 0 434 228 590 256 17 28 chr1 23279252 23279432 -219384921 - MER63B DNA MER1_type -239 197 20 2035 115 4 0 chr1 23279432 23279741 -219384612 - AluSx SINE Alu 0 314 5 717 254 52 21 chr1 23279774 23279967 -219384386 - MIR SINE MIR -5 257 59 282 306 40 24 chr1 23280708 23280832 -219383521 + MIR SINE MIR 113 238 -24 316 257 0 0 chr1 23280839 23280909 -219383444 - MIR SINE MIR -116 146 77 182 333 54 0 chr1 23281073 23281166 -219383187 - MIR SINE MIR -143 119 22 197 231 19 0 chr1 23281185 23281237 -219383116 + MIR SINE MIR 78 130 -78 1880 149 10 0 chr1 23281452 23281747 -219382606 + AluSp SINE Alu 1 298 -15 226 298 192 7 chr1 23282148 23282299 -219382054 + L2 LINE L2 2928 3106 -166 196 304 36 0 chr1 23282371 23282427 -219381926 + L2 LINE L2 3215 3272 0 375 284 37 37 chr1 23282740 23282874 -219381479 - MIR SINE MIR -62 200 67 348 313 149 0 chr1 23283696 23283830 -219380523 + MIR SINE MIR 44 197 -65 2153 107 0 0 chr1 23283913 23284229 -219380124 - AluSx SINE Alu 0 316 1 1897 133 0 54 chr1 23284234 23284550 -219379803 - AluSx SINE Alu -11 301 3 1728 193 35 80 chr1 23284563 23284699 -219379654 - L1MB8 LINE L1 0 6178 6037 180 0 0 0 chr1 23284699 23284719 -219379634 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1568 187 3 7 chr1 23284721 23285004 -219379349 - AluJb SINE Alu -30 282 1 1728 193 35 80 chr1 23285004 23285376 -219378977 - L1MB8 LINE L1 -142 6036 5690 290 96 0 19 chr1 23285691 23285743 -219378610 + (CA)n Simple_repeat Simple_repeat 2 52 0 238 327 100 9 chr1 23285745 23285855 -219378498 - MIR SINE MIR -97 165 46 949 220 39 0 chr1 23286850 23287082 -219377271 + L1ME2 LINE L1 5913 6153 -11 1641 145 64 14 chr1 23287142 23287425 -219376928 + AluJb SINE Alu 1 297 -15 279 0 0 0 chr1 23287425 23287456 -219376897 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 336 24 0 0 chr1 23287456 23287497 -219376856 + (CAGG)n Simple_repeat Simple_repeat 2 42 0 225 259 0 0 chr1 23288119 23288177 -219376176 + (CA)n Simple_repeat Simple_repeat 2 59 0 299 324 203 7 chr1 23288350 23288498 -219375855 + MIR SINE MIR 35 211 -51 271 307 34 11 chr1 23289386 23289474 -219374879 + MIR SINE MIR 35 124 -84 195 206 127 16 chr1 23289586 23289649 -219374704 + MIR3 SINE MIR 3 72 -136 346 299 8 55 chr1 23290260 23290276 -219374077 - L2 LINE L2 -2 3311 3296 189 0 0 0 chr1 23290276 23290297 -219374056 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 346 299 8 55 chr1 23290297 23290407 -219373946 - L2 LINE L2 -17 3296 3191 206 285 153 22 chr1 23290408 23290545 -219373808 + L2 LINE L2 3158 3312 -1 352 306 19 37 chr1 23290810 23290918 -219373435 + MIR SINE MIR 33 138 -70 192 321 0 0 chr1 23291537 23291593 -219372760 + MIR SINE MIR 5 60 -202 190 337 72 0 chr1 23291563 23291646 -219372707 + L2 LINE L2 3109 3197 -75 * 328 311 47 19 chr1 23291632 23291738 -219372615 - MIR SINE MIR -74 188 80 467 231 109 26 chr1 23292264 23292420 -219371933 + MIR3 SINE MIR 27 195 -13 243 206 0 63 chr1 23293079 23293142 -219371211 + MIR3 SINE MIR 104 162 -46 201 39 0 0 chr1 23293615 23293641 -219370712 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr1 23293775 23293797 -219370556 + AT_rich Low_complexity Low_complexity 1 22 0 415 313 30 0 chr1 23293909 23294043 -219370310 + MIR SINE MIR 93 230 -32 273 319 21 0 chr1 23294353 23294447 -219369906 - MIR SINE MIR -59 203 108 201 375 131 9 chr1 23294501 23294730 -219369623 - MIR SINE MIR -4 258 2 751 189 5 63 chr1 23295188 23295378 -219368975 + MER20 DNA MER1_type 1 179 -40 317 276 147 35 chr1 23295680 23295850 -219368503 + MIR3 SINE MIR 20 208 0 456 229 16 8 chr1 23295946 23296068 -219368285 + MER58B DNA MER1_type 217 339 -2 186 282 84 14 chr1 23296213 23296284 -219368069 + MIR SINE MIR 108 183 -79 731 258 60 17 chr1 23296576 23296809 -219367544 - MIR SINE MIR -16 246 4 839 202 93 16 chr1 23297296 23297544 -219366809 - MER69 DNA AcHobo 0 2526 2260 251 98 20 59 chr1 23297545 23297596 -219366757 - MER69 DNA AcHobo -1115 111 63 441 0 0 0 chr1 23298144 23298193 -219366160 + (TG)n Simple_repeat Simple_repeat 1 49 0 375 132 0 0 chr1 23298193 23298261 -219366092 + (GA)n Simple_repeat Simple_repeat 2 69 0 244 318 73 18 chr1 23298294 23298404 -219365949 - MIR3 SINE MIR -50 158 43 320 280 8 15 chr1 23299268 23299400 -219364953 + LTR33 LTR ERVL 16 146 -375 561 234 32 7 chr1 23299462 23299616 -219364737 + LTR33 LTR ERVL 278 435 -86 762 176 16 0 chr1 23299645 23299770 -219364583 - AluSq/x SINE Alu -183 129 3 473 236 108 0 chr1 23300346 23300494 -219363859 - L2 LINE L2 -616 2698 2535 2214 107 0 0 chr1 23300544 23300844 -219363509 + AluY SINE Alu 1 300 -11 186 268 18 0 chr1 23301120 23301176 -219363177 + L2 LINE L2 3227 3283 -30 312 228 140 18 chr1 23301253 23301367 -219362986 - MIR3 SINE MIR -68 140 13 188 65 0 32 chr1 23301375 23301406 -219362947 + (CCCCCT)n Simple_repeat Simple_repeat 5 34 0 271 310 121 0 chr1 23301596 23301738 -219362615 - MIR3 SINE MIR -26 182 21 207 114 0 0 chr1 23302127 23302162 -219362191 + (GGCTG)n Simple_repeat Simple_repeat 4 38 0 1920 143 3 7 chr1 23302251 23302552 -219361801 + AluJo SINE Alu 1 300 -12 401 320 180 15 chr1 23302596 23302802 -219361551 - MIR SINE MIR -20 242 3 327 269 158 39 chr1 23303733 23303967 -219360386 + L3 LINE CR1 1305 1566 -11 1093 191 0 31 chr1 23303972 23304197 -219360156 - MER58A DNA MER1_type -1 223 6 393 117 0 0 chr1 23304340 23304400 -219359953 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 192 241 0 0 chr1 23304487 23304545 -219359808 + (TTCA)n Simple_repeat Simple_repeat 2 59 0 219 254 119 0 chr1 23304755 23304814 -219359539 - L2 LINE L2 -58 3255 3190 273 246 105 9 chr1 23304821 23304935 -219359418 - L2 LINE L2 -284 2988 2864 494 282 35 0 chr1 23304956 23305126 -219359227 + (CGTG)n Simple_repeat Simple_repeat 4 179 0 328 319 113 8 chr1 23305740 23305927 -219358426 + MIR SINE MIR 34 261 -1 290 325 104 26 chr1 23306111 23306265 -219358088 + MIR SINE MIR 71 236 -26 * 350 317 85 0 chr1 23306257 23306431 -219357922 - MIR SINE MIR 0 262 65 204 390 28 7 chr1 23307492 23307633 -219356720 - MIR SINE MIR -21 241 98 245 310 0 0 chr1 23308134 23308221 -219356132 + (TGG)n Simple_repeat Simple_repeat 2 88 0 355 298 190 30 chr1 23308475 23308844 -219355509 - L2 LINE L2 -1 3271 2844 509 230 6 0 chr1 23309319 23309497 -219354856 + (TG)n Simple_repeat Simple_repeat 2 180 0 186 43 0 0 chr1 23309566 23309589 -219354764 + (TG)n Simple_repeat Simple_repeat 2 24 0 1240 271 142 12 chr1 23309722 23310435 -219353918 - L2 LINE L2 0 3313 2503 514 274 19 13 chr1 23310649 23310831 -219353522 + MIR SINE MIR 37 215 -47 288 278 148 28 chr1 23310939 23311047 -219353306 - MIR SINE MIR -66 142 22 783 89 9 0 chr1 23311225 23311337 -219353016 - AluSg/x SINE Alu -2 307 195 420 143 0 0 chr1 23311551 23311621 -219352732 + (TG)n Simple_repeat Simple_repeat 2 71 0 1968 100 10 48 chr1 23313204 23313515 -219350838 - AluSg SINE Alu -11 299 1 187 295 33 0 chr1 23313588 23313649 -219350704 + L2 LINE L2 3244 3306 -7 2318 100 0 0 chr1 23314347 23314648 -219349705 + AluSx SINE Alu 1 301 -11 198 280 47 37 chr1 23314868 23314975 -219349378 - L2 LINE L2 -787 2527 2420 283 241 58 23 chr1 23315046 23315133 -219349220 + MIR SINE MIR 80 169 -93 847 177 4 16 chr1 23315815 23316075 -219348278 + (TTCA)n Simple_repeat Simple_repeat 1 256 0 599 208 11 11 chr1 23316087 23316265 -219348088 + (TTCA)n Simple_repeat Simple_repeat 3 180 0 200 59 29 0 chr1 23316305 23316339 -219348014 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chr1 23317208 23317239 -219347114 + AT_rich Low_complexity Low_complexity 1 31 0 560 255 88 56 chr1 23317717 23317968 -219346385 + MIR SINE MIR 4 262 0 474 313 31 19 chr1 23318007 23318167 -219346186 + MIR SINE MIR 101 262 0 271 209 267 12 chr1 23318332 23318418 -219345935 - MIR SINE MIR -63 145 38 222 150 0 0 chr1 23318485 23318525 -219345828 + (ATG)n Simple_repeat Simple_repeat 1 40 0 375 326 39 16 chr1 23318534 23318663 -219345690 - MIR SINE MIR -37 225 94 231 311 14 0 chr1 23318814 23318888 -219345465 - MIR3 SINE MIR -52 156 82 242 299 55 47 chr1 23319459 23319586 -219344767 + MIR3 SINE MIR 38 165 -43 487 324 42 24 chr1 23320181 23320394 -219343959 + MIR SINE MIR 29 245 -17 220 250 0 0 chr1 23320601 23320649 -219343704 + L2 LINE L2 3263 3310 -3 414 0 0 0 chr1 23320979 23321025 -219343328 + (TG)n Simple_repeat Simple_repeat 2 47 0 282 259 26 35 chr1 23321167 23321283 -219343070 - L2 LINE L2 -184 3129 3015 581 293 19 43 chr1 23321409 23321617 -219342736 + MIR SINE MIR 60 262 0 247 309 149 48 chr1 23321776 23321944 -219342409 - MIR SINE MIR -45 217 33 433 281 98 24 chr1 23322395 23322559 -219341794 + MIR3 SINE MIR 16 191 -17 946 238 21 148 chr1 23322573 23322769 -219341584 - L2 LINE L2 0 3313 3094 1819 170 23 0 chr1 23322769 23323069 -219341284 - AluJb SINE Alu 0 312 6 946 238 21 148 chr1 23323069 23323431 -219340922 - L2 LINE L2 -219 3094 2826 365 223 75 0 chr1 23323484 23323578 -219340775 + MER20B DNA MER1_type 63 163 -620 1837 179 0 22 chr1 23323609 23324005 -219340348 + AluJb SINE Alu 1 389 0 4227 161 26 23 chr1 23324010 23324244 -219340109 + L1MB3 LINE L1 5441 5673 -510 1913 150 0 3 chr1 23324244 23324550 -219339803 - AluSx SINE Alu -7 305 1 4227 161 26 23 chr1 23324550 23325055 -219339298 + L1MB3 LINE L1 5673 6182 -1 2193 112 3 6 chr1 23325064 23325378 -219338975 + AluSq SINE Alu 1 313 0 452 300 75 31 chr1 23325423 23325716 -219338637 - L2 LINE L2 -534 2780 2475 218 352 109 31 chr1 23326741 23326934 -219337419 - L3b LINE CR1 -4 1579 1372 1504 245 125 12 chr1 23326941 23327452 -219336901 + MLT1K LTR MaLR 1 569 -19 250 347 37 21 chr1 23327464 23327654 -219336699 - L3b LINE CR1 -218 1365 1173 500 309 121 42 chr1 23327658 23328062 -219336291 - MLT1K LTR MaLR -2 586 151 1104 96 0 0 chr1 23328284 23328493 -219335860 + (TCCA)n Simple_repeat Simple_repeat 1 209 0 363 44 0 0 chr1 23328513 23328558 -219335795 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 356 262 35 41 chr1 23328717 23328862 -219335491 - L2 LINE L2 -183 3089 2946 328 335 21 7 chr1 23329417 23329560 -219334793 + MIR SINE MIR 4 151 -57 383 259 206 8 chr1 23330116 23330247 -219334106 - MIR3 SINE MIR -35 173 17 434 246 42 17 chr1 23330354 23330472 -219333881 - MIR SINE MIR -63 145 25 210 275 58 0 chr1 23330779 23330848 -219333505 + MIR SINE MIR 81 153 -55 319 206 15 0 chr1 23331461 23331529 -219332824 + MER117 DNA MER1_type 128 196 -1 494 281 163 0 chr1 23331727 23331880 -219332473 - MER91A DNA MER1_type -17 179 2 414 241 52 0 chr1 23332534 23332650 -219331703 - MIR3 SINE MIR -6 202 81 291 247 270 0 chr1 23332882 23332971 -219331382 - MER91A DNA MER1_type 0 196 84 596 259 129 35 chr1 23333038 23333239 -219331114 + MIR SINE MIR 11 230 -32 254 306 19 28 chr1 23333646 23333754 -219330599 - L2 LINE L2 0 3313 3207 737 309 49 8 chr1 23334288 23334534 -219329819 + MIR SINE MIR 7 262 0 374 127 0 16 chr1 23384931 23385031 -219279322 + Alu SINE Alu 235 302 0 461 157 12 0 chr1 23385036 23385119 -219279234 + FLAM_A SINE Alu 48 131 -11 192 200 0 0 chr1 23385148 23385193 -219279160 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 424 273 55 0 chr1 23385244 23385372 -219278981 - MIR SINE MIR -117 145 11 657 139 0 0 chr1 23386116 23386224 -219278129 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 1201 267 25 47 chr1 23386232 23386394 -219277959 - L2 LINE L2 -1 3312 3148 1307 106 78 18 chr1 23386394 23386611 -219277742 + MER30 DNA MER1_type 1 230 0 1201 267 25 47 chr1 23386611 23386894 -219277459 - L2 LINE L2 -165 3148 2877 523 274 39 46 chr1 23386915 23387174 -219277179 + MIR SINE MIR 6 262 0 2102 142 0 19 chr1 23387189 23387507 -219276846 + AluJo SINE Alu 1 312 0 870 186 6 6 chr1 23387526 23387687 -219276666 + FRAM SINE Alu 1 161 -5 284 293 131 0 chr1 23388219 23388318 -219276035 - L2 LINE L2 -5 3308 3197 1104 142 16 0 chr1 23388321 23388504 -219275849 + MER5A DNA MER1_type 1 186 -3 951 141 0 7 chr1 23388504 23388639 -219275714 + AluSq/x SINE Alu 1 134 -178 1499 179 24 12 chr1 23388642 23388893 -219275460 + AluSx SINE Alu 6 259 -53 474 88 0 0 chr1 23388923 23388991 -219275362 + (GAATG)n Simple_repeat Simple_repeat 3 70 0 1264 239 110 87 chr1 23389054 23389573 -219274780 + MLT1H1 LTR MaLR 1 531 -11 284 315 111 6 chr1 23389683 23389845 -219274508 + MIR3 SINE MIR 15 193 -15 623 216 94 22 chr1 23389992 23390173 -219274180 + MIR SINE MIR 21 214 -48 241 323 8 39 chr1 23390408 23390535 -219273818 + MIR SINE MIR 70 192 -70 212 271 0 0 chr1 23390649 23390708 -219273645 + MIR SINE MIR 88 146 -62 251 0 59 0 chr1 23390776 23390810 -219273543 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1823 171 0 0 chr1 23390810 23391090 -219273263 - AluJb SINE Alu -32 280 1 2207 118 3 16 chr1 23391098 23391412 -219272941 - AluSq SINE Alu -3 310 1 509 215 56 98 chr1 23391449 23391663 -219272690 + MER102a DNA MER1_type 124 328 -2 291 280 29 65 chr1 23392128 23392269 -219272084 + MIR SINE MIR 15 149 -63 2431 145 29 2 chr1 23392639 23393054 -219271299 + MSTB LTR MaLR 1 426 0 1917 253 52 21 chr1 23393054 23393568 -219270785 + MLT1K LTR MaLR 59 588 0 209 227 0 0 chr1 23393606 23393650 -219270703 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 195 146 0 0 chr1 23393663 23393704 -219270649 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 554 250 22 7 chr1 23393872 23394008 -219270345 + MIR SINE MIR 88 225 -37 311 322 41 12 chr1 23394196 23394367 -219269986 - MER5A DNA MER1_type -8 181 6 383 253 0 0 chr1 23394386 23394469 -219269884 - MIR SINE MIR -65 143 61 182 206 0 0 chr1 23394930 23394964 -219269389 + MIR SINE MIR 220 253 -9 693 249 47 14 chr1 23396091 23396344 -219268009 + MIR SINE MIR 1 260 -2 791 133 0 37 chr1 23397108 23397243 -219267110 + FLAM_C SINE Alu 2 131 -2 329 224 49 56 chr1 23397274 23397304 -219267049 + L1ME1 LINE L1 3930 3959 -2187 2470 89 0 0 chr1 23397304 23397606 -219266747 + AluSq SINE Alu 1 302 -11 329 224 49 56 chr1 23397606 23397718 -219266635 + L1ME1 LINE L1 3959 4071 -2075 2727 213 101 24 chr1 23397722 23398171 -219266182 + L1ME1 LINE L1 4963 5376 -790 1597 166 22 42 chr1 23398171 23398526 -219265827 - MER7A DNA MER2_type 0 346 1 2727 213 101 24 chr1 23398526 23399194 -219265159 + L1ME1 LINE L1 5376 6161 -5 203 246 0 82 chr1 23400122 23400183 -219264170 - L2 LINE L2 -346 2968 2913 1114 251 68 38 chr1 23400240 23400610 -219263743 + MLT1K LTR MaLR 192 572 -16 803 296 14 0 chr1 23400780 23400996 -219263357 + MIR SINE MIR 30 248 -14 251 248 96 45 chr1 23401114 23401271 -219263082 + L2 LINE L2 2372 2536 -778 224 231 327 0 chr1 23401285 23401408 -219262945 + MER5A DNA MER1_type 4 174 -15 418 159 9 115 chr1 23401420 23401533 -219262820 - MER5B DNA MER1_type -6 172 72 599 283 7 0 chr1 23401773 23401925 -219262428 - MIR SINE MIR -85 177 25 1420 213 81 64 chr1 23402958 23403380 -219260973 + L1ME1 LINE L1 5736 6164 0 313 298 96 83 chr1 23403509 23403811 -219260542 + L2 LINE L2 2967 3272 0 212 248 171 9 chr1 23404375 23404480 -219259873 - L2 LINE L2 -1 3271 3150 878 259 71 0 chr1 23404543 23404782 -219259571 - MIR SINE MIR -5 257 2 344 211 14 0 chr1 23404805 23404876 -219259477 - L2 LINE L2 -1 3312 3241 207 283 80 62 chr1 23405771 23405884 -219258469 + MER5A DNA MER1_type 46 160 -29 2485 63 0 13 chr1 23405884 23406185 -219258168 - AluY SINE Alu -14 297 1 313 371 34 0 chr1 23406410 23406588 -219257765 - MIR SINE MIR -70 192 9 284 312 72 22 chr1 23407143 23407281 -219257072 - MIR3 SINE MIR -34 174 30 808 231 77 28 chr1 23408084 23408117 -219256236 + MIR SINE MIR 2 32 -230 2165 62 51 0 chr1 23408117 23408393 -219255960 + AluY SINE Alu 1 290 -21 808 231 77 28 chr1 23408393 23408606 -219255747 + MIR SINE MIR 32 260 -2 647 150 50 94 chr1 23408655 23408791 -219255562 + FRAM SINE Alu 4 134 -168 2116 67 0 34 chr1 23408791 23409058 -219255295 - AluSg SINE Alu -18 292 35 647 150 50 94 chr1 23409058 23409081 -219255272 + FRAM SINE Alu 134 156 -10 274 219 16 16 chr1 23409902 23409966 -219254387 + MLT1D LTR MaLR 1 64 -441 2017 138 14 7 chr1 23409968 23410258 -219254095 + AluSp SINE Alu 1 292 -21 715 127 38 13 chr1 23410281 23410439 -219253914 + GA-rich Low_complexity Low_complexity 4 165 0 277 108 0 0 chr1 23410439 23410476 -219253877 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 1694 201 73 32 chr1 23410476 23410914 -219253439 + MLT1D LTR MaLR 50 505 0 249 135 0 0 chr1 23410914 23410950 -219253403 + MLT1L LTR MaLR 570 605 -10 1016 168 0 18 chr1 23411003 23411170 -219253183 - FRAM SINE Alu -13 163 1 481 302 113 15 chr1 23411171 23411408 -219252945 - MIR SINE MIR -5 257 3 200 152 43 0 chr1 23411726 23411772 -219252581 + (TG)n Simple_repeat Simple_repeat 1 48 0 972 175 0 0 chr1 23411772 23411926 -219252427 - FRAM SINE Alu -22 154 1 221 236 0 0 chr1 23411975 23412030 -219252323 - MER5A DNA MER1_type -126 63 9 1487 256 73 25 chr1 23412200 23413010 -219251343 + L2 LINE L2 2457 3313 0 885 160 123 0 chr1 23413660 23413847 -219250506 - MER20 DNA MER1_type -6 213 4 430 271 131 25 chr1 23413862 23414106 -219250247 + L1ME4a LINE L1 5830 6099 -22 235 265 88 0 chr1 23414106 23414174 -219250179 - L2 LINE L2 -26 3287 3214 2107 131 10 0 chr1 23414303 23414593 -219249760 + AluJb SINE Alu 1 293 -19 210 273 0 0 chr1 23414666 23414721 -219249632 + L2 LINE L2 3258 3312 -1 192 254 70 14 chr1 23414709 23414780 -219249573 - L2 LINE L2 -548 2766 2692 * 385 273 15 53 chr1 23415135 23415267 -219249086 + L3 LINE CR1 841 967 -610 1030 190 0 0 chr1 23415433 23415617 -219248736 - MIR SINE MIR 0 262 79 487 214 87 8 chr1 23415791 23415917 -219248436 - L2 LINE L2 0 3272 3137 807 259 119 124 chr1 23416143 23417156 -219247197 - L2 LINE L2 -409 2905 1898 279 79 0 0 chr1 23417768 23417806 -219246547 + (ATG)n Simple_repeat Simple_repeat 3 40 0 208 327 7 80 chr1 23417936 23418043 -219246310 - MIR SINE MIR 0 262 168 1986 129 38 0 chr1 23418043 23418330 -219246023 - AluJb SINE Alu -14 298 1 208 327 7 80 chr1 23418330 23418372 -219245981 - MIR SINE MIR -94 168 124 1683 160 7 55 chr1 23419208 23419515 -219244838 - AluJo SINE Alu -20 292 1 698 256 90 5 chr1 23419668 23419879 -219244474 + MIR SINE MIR 21 249 -13 776 320 55 42 chr1 23419909 23420343 -219244010 - L2 LINE L2 0 3272 2833 222 378 126 0 chr1 23420414 23420549 -219243804 + MIR SINE MIR 110 261 -1 698 212 148 18 chr1 23420624 23420841 -219243512 + MIR SINE MIR 5 249 -13 2723 165 21 2 chr1 23420923 23421445 -219242908 - L1MA7 LINE L1 -6 6285 5754 318 26 0 0 chr1 23421446 23421485 -219242868 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1627 111 13 85 chr1 23421593 23421900 -219242453 - L1MA7 LINE L1 -535 5765 5481 2365 100 10 10 chr1 23422243 23422554 -219241799 + AluSq SINE Alu 1 311 -2 197 314 100 0 chr1 23423053 23423123 -219241230 + MIR SINE MIR 121 197 -65 215 306 38 75 chr1 23423931 23424091 -219240262 - MIR3 SINE MIR -14 194 41 228 338 14 0 chr1 23424203 23424274 -219240079 + L2 LINE L2 3234 3305 -8 224 304 35 29 chr1 23424416 23424587 -219239766 + (CTGGGG)n Simple_repeat Simple_repeat 6 177 0 356 297 142 14 chr1 23425290 23425438 -219238915 + MIR SINE MIR 19 185 -77 695 218 0 30 chr1 23425503 23425668 -219238685 + MIR SINE MIR 12 171 -91 413 250 31 16 chr1 23425669 23425797 -219238556 - LTR67 LTR ERVL 0 557 428 1973 180 56 0 chr1 23426414 23426792 -219237561 - L1MB7 LINE L1 -27 6157 5759 206 157 0 20 chr1 23427131 23427182 -219237171 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 1161 95 0 0 chr1 23427201 23427370 -219236983 + (TGGA)n Simple_repeat Simple_repeat 4 172 0 1721 166 53 0 chr1 23427444 23427609 -219236744 - AluJb SINE Alu -14 298 110 192 40 0 0 chr1 23427609 23427634 -219236719 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1721 166 53 0 chr1 23427634 23427751 -219236602 - AluJb SINE Alu -202 110 1 181 303 28 73 chr1 23428010 23428119 -219236234 - MIR SINE MIR -59 149 46 360 0 0 0 chr1 23428300 23428340 -219236013 + (TG)n Simple_repeat Simple_repeat 2 41 0 240 143 0 0 chr1 23428348 23428390 -219235963 + (GA)n Simple_repeat Simple_repeat 1 42 0 457 274 72 20 chr1 23428713 23428866 -219235487 + MIR SINE MIR 23 183 -79 957 193 71 14 chr1 23428909 23429121 -219235232 + MER58A DNA MER1_type 1 224 0 813 286 24 5 chr1 23429303 23429516 -219234837 + MIR SINE MIR 34 250 -12 322 248 10 10 chr1 23430009 23430110 -219234243 + MIR SINE MIR 52 152 -56 2226 94 0 13 chr1 23430481 23430788 -219233565 + AluSx SINE Alu 2 304 -8 628 283 11 6 chr1 23431072 23431249 -219233104 + MIR SINE MIR 6 183 -79 983 106 0 0 chr1 23431375 23431507 -219232846 + AluSq/x SINE Alu 4 135 -178 1982 128 7 10 chr1 23431507 23431813 -219232540 + AluSx SINE Alu 1 305 -7 300 260 72 69 chr1 23431839 23432025 -219232328 - MIR SINE MIR -45 217 23 270 376 55 0 chr1 23432365 23432530 -219231823 - MIR3 SINE MIR 0 208 35 622 185 117 31 chr1 23432673 23432835 -219231518 + MIR SINE MIR 63 238 -24 577 227 16 8 chr1 23433332 23433460 -219230893 + MIR SINE MIR 27 155 -107 1013 222 124 33 chr1 23433952 23434443 -219229910 - L1MC4a LINE L1 -17 6149 6016 1726 148 0 24 chr1 23434448 23434762 -219229591 - AluJb SINE Alu 0 307 1 613 290 6 6 chr1 23435089 23435265 -219229088 - MIR SINE MIR -21 241 66 589 311 31 34 chr1 23435573 23435895 -219228458 - L1ME4a LINE L1 -223 5898 5578 406 232 131 0 chr1 23436199 23436298 -219228055 + MIR SINE MIR 41 152 -56 474 183 108 17 chr1 23436298 23436418 -219227935 + FLAM_C SINE Alu 1 131 -2 278 326 8 47 chr1 23436525 23436654 -219227699 - MIR SINE MIR -68 140 17 2648 98 19 3 chr1 23437494 23437863 -219226490 - THE1C LTR MaLR 0 375 1 238 331 166 0 chr1 23438375 23438520 -219225833 + MIR SINE MIR 3 171 -91 269 207 24 37 chr1 23438814 23438896 -219225457 - L1MC4a LINE L1 -2009 5799 5719 780 210 69 28 chr1 23439229 23439470 -219224883 + MIR SINE MIR 6 262 0 540 244 70 0 chr1 23440591 23440770 -219223583 - MIR SINE MIR -52 210 17 259 248 52 50 chr1 23440807 23440926 -219223427 + MER5A DNA MER1_type 1 131 -47 1335 132 0 24 chr1 23441164 23441399 -219222954 - AluJb SINE Alu 0 314 85 263 278 76 97 chr1 23441888 23442032 -219222321 - MIR3 SINE MIR -66 142 2 684 286 71 109 chr1 23442260 23442602 -219221751 + L2 LINE L2 2383 2737 -576 1115 41 7 0 chr1 23442602 23442747 -219221606 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 684 286 71 109 chr1 23442747 23442781 -219221572 + L2 LINE L2 2737 2771 -542 1994 122 0 3 chr1 23442781 23443077 -219221276 - AluSx SINE Alu -17 295 1 684 286 71 109 chr1 23443077 23443644 -219220709 + L2 LINE L2 2771 3311 -2 2600 149 29 5 chr1 23443674 23444089 -219220264 - MSTB LTR MaLR 0 426 2 710 224 4 96 chr1 23444652 23444902 -219219451 - MLT1K LTR MaLR -13 575 349 591 212 13 40 chr1 23445571 23445605 -219218748 + MER103 DNA DNA 1 34 -132 2038 118 54 48 chr1 23445605 23445977 -219218376 + THE1C LTR MaLR 1 374 -1 591 212 13 40 chr1 23445977 23446093 -219218260 + MER103 DNA DNA 34 147 -19 389 206 157 88 chr1 23446165 23446369 -219217984 + MIR SINE MIR 13 230 -32 1757 97 112 8 chr1 23446844 23447112 -219217241 - AluSg SINE Alu -14 296 1 293 188 78 0 chr1 23447427 23447491 -219216862 + MLT1K LTR MaLR 517 585 -3 1603 189 0 23 chr1 23447531 23447833 -219216520 + AluJo SINE Alu 1 295 -17 423 321 0 0 chr1 23447834 23447940 -219216413 - L2 LINE L2 -3 3310 3205 276 209 0 52 chr1 23448101 23448235 -219216118 + GA-rich Low_complexity Low_complexity 4 130 0 11073 192 32 22 chr1 23448235 23448938 -219215415 - L1MB3 LINE L1 -140 6043 5348 2126 111 0 0 chr1 23448938 23449257 -219215096 - AluSg SINE Alu 0 310 1 11073 192 32 22 chr1 23449257 23450448 -219213905 - L1MB3 LINE L1 -835 5348 4170 647 197 15 8 chr1 23450448 23450580 -219213773 + FLAM_A SINE Alu 1 133 0 11073 192 32 22 chr1 23450580 23451559 -219212794 - L1MB3 LINE L1 -2013 4170 3124 2115 125 0 16 chr1 23451559 23451872 -219212481 - AluSx SINE Alu -4 308 1 11073 192 32 22 chr1 23451872 23452367 -219211986 - L1MB3 LINE L1 -3059 3124 2635 755 139 14 21 chr1 23452367 23452511 -219211842 - LTR21A LTR ERV1 -19 486 344 670 204 153 61 chr1 23452532 23452728 -219211625 - LTR21A LTR ERV1 -103 402 189 667 253 12 10 chr1 23452856 23453052 -219211301 - L1MB3 LINE L1 -3537 2609 2418 1097 177 25 20 chr1 23453058 23453261 -219211092 + L1MCa LINE L1 351 554 -5872 5889 99 38 8 chr1 23453261 23454097 -219210256 - MER4D LTR ERV1 -2 901 41 4682 116 25 26 chr1 23454097 23454220 -219210133 + MER50 LTR ERV1 1 123 -611 1860 118 20 27 chr1 23454220 23454517 -219209836 + AluSx SINE Alu 2 296 -16 4682 116 25 26 chr1 23454517 23455116 -219209237 + MER50 LTR ERV1 123 722 -12 254 184 20 20 chr1 23455154 23455203 -219209150 + MER50-int LTR ERV1 1 49 -7156 358 147 88 0 chr1 23455204 23455272 -219209081 - MER50 LTR ERV1 -660 74 1 238 111 22 44 chr1 23455272 23455317 -219209036 - MER4D LTR ERV1 -859 44 1 278 239 15 15 chr1 23455317 23455384 -219208969 + L1MCa LINE L1 549 615 -5811 5702 127 34 51 chr1 23455387 23455664 -219208689 + L1MCa LINE L1 573 853 -5573 2227 106 3 0 chr1 23455664 23455966 -219208387 + AluSg SINE Alu 1 303 -7 5702 127 34 51 chr1 23455966 23456909 -219207444 + L1MCa LINE L1 853 1864 -4562 1994 141 0 0 chr1 23456909 23457207 -219207146 + AluJb SINE Alu 1 298 -14 359 204 123 31 chr1 23457207 23457328 -219207025 + L1ME1 LINE L1 6047 6334 0 441 293 153 31 chr1 23457331 23457683 -219206670 - L2 LINE L2 -615 2699 2305 308 173 0 0 chr1 23458344 23458396 -219205957 + MIR SINE MIR 183 234 -28 421 246 64 53 chr1 23458413 23458600 -219205753 + HAL1b LINE L1 1159 1347 -1 854 286 39 0 chr1 23458627 23458861 -219205492 + MIR SINE MIR 20 262 0 2170 96 6 19 chr1 23458889 23459202 -219205151 - AluSg SINE Alu -1 309 1 2106 70 0 4 chr1 23460029 23460301 -219204052 - AluSq SINE Alu -10 303 33 331 217 0 0 chr1 23460334 23460394 -219203959 - L2 LINE L2 -3 3310 3251 1839 83 0 40 chr1 23461480 23461757 -219202596 + AluSq SINE Alu 40 305 -8 1031 197 122 56 chr1 23462447 23462767 -219201586 + MER58B DNA MER1_type 1 341 0 217 252 47 126 chr1 23462942 23463069 -219201284 - MIR SINE MIR -21 241 125 490 264 0 74 chr1 23463429 23463592 -219200761 - L2 LINE L2 0 3313 3163 669 237 77 41 chr1 23463646 23463840 -219200513 - MIR SINE MIR -13 249 49 293 293 73 32 chr1 23463840 23463963 -219200390 + L2 LINE L2 3141 3268 -45 2077 104 0 10 chr1 23464025 23464341 -219200012 - AluSx SINE Alu 0 313 1 479 301 103 52 chr1 23464344 23464750 -219199603 - L2 LINE L2 -12 3301 2875 271 258 186 8 chr1 23464772 23464896 -219199457 + MIR SINE MIR 47 192 -70 699 132 110 37 chr1 23467001 23467137 -219197216 + FRAM SINE Alu 1 146 -30 484 306 190 29 chr1 23467958 23468305 -219196048 + L2 LINE L2 2354 2756 -558 24 0 0 0 chr1 23468722 23468746 -219195607 + AT_rich Low_complexity Low_complexity 1 24 0 970 113 0 7 chr1 23468763 23468905 -219195448 - AluJb SINE Alu -171 141 1 474 244 26 0 chr1 23468994 23469109 -219195244 - L1MC/D LINE L1 -2290 5518 5401 691 335 36 31 chr1 23469139 23469950 -219194403 - L1MC/D LINE L1 -913 5233 4419 213 247 49 62 chr1 23470137 23470218 -219194135 + L2 LINE L2 3193 3272 0 27 29 0 0 chr1 23470390 23470424 -219193929 + AT_rich Low_complexity Low_complexity 1 34 0 455 261 45 8 chr1 23470463 23470597 -219193756 - MIR SINE MIR 0 262 124 273 228 113 3 chr1 23470643 23470746 -219193607 - MIR SINE MIR -62 146 36 194 292 97 0 chr1 23471786 23471858 -219192495 + L2 LINE L2 3141 3219 -53 1056 280 16 0 chr1 23472235 23472492 -219191861 + MIR SINE MIR 2 262 0 467 315 34 7 chr1 23472588 23472734 -219191619 + MIR3 SINE MIR 58 207 -1 793 221 62 67 chr1 23472998 23473238 -219191115 - MIR SINE MIR 0 262 24 1071 217 33 8 chr1 23474078 23474318 -219190035 - MIR SINE MIR -15 247 2 265 220 290 30 chr1 23474441 23474541 -219189812 + L2 LINE L2 3185 3310 -3 548 236 114 12 chr1 23474603 23474857 -219189496 - L1ME4a LINE L1 -4 6117 5838 304 127 0 0 chr1 23474890 23474945 -219189408 - L1MB7 LINE L1 -18 6166 6112 3564 168 126 68 chr1 23474959 23475960 -219188393 - MER52C LTR ERV1 0 1278 9 4315 151 21 32 chr1 23475963 23476778 -219187575 - L1MB7 LINE L1 -100 6084 5279 1176 256 58 59 chr1 23476878 23477544 -219186809 + L2 LINE L2 2629 3313 0 443 354 128 37 chr1 23477785 23478277 -219186076 - L2 LINE L2 -431 2883 2347 5806 151 33 26 chr1 23478474 23478690 -219185663 + L1MC1 LINE L1 3 216 -6210 1951 120 3 0 chr1 23478690 23478973 -219185380 + AluSx SINE Alu 1 284 -28 889 126 8 0 chr1 23478846 23478973 -219185380 + AluSg/x SINE Alu 155 311 0 222 0 35 0 chr1 23478973 23479002 -219185351 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5806 151 33 26 chr1 23479002 23480142 -219184211 + L1MC1 LINE L1 215 1374 -5052 4603 221 58 8 chr1 23480199 23482618 -219181735 + L1MC1 LINE L1 3528 6148 -465 2504 66 0 10 chr1 23482618 23482921 -219181432 - AluY SINE Alu -11 300 1 1162 61 0 0 chr1 23482923 23483054 -219181299 - AluSg1 SINE Alu -178 131 1 521 158 25 211 chr1 23483082 23483163 -219181190 - L2 LINE L2 -15 3298 3204 1470 157 0 0 chr1 23483163 23483379 -219180974 + AluJb SINE Alu 85 300 -12 521 158 25 211 chr1 23483379 23483462 -219180891 - L2 LINE L2 -109 3204 3107 882 120 0 23 chr1 23483462 23483595 -219180758 + AluJo/FLAM SINE Alu 4 133 -169 2340 80 3 13 chr1 23483597 23483896 -219180457 + AluSc SINE Alu 3 298 -11 521 158 25 211 chr1 23483896 23484006 -219180347 - L2 LINE L2 -207 3106 3072 2240 96 27 0 chr1 23484664 23484957 -219179396 - AluSc SINE Alu -8 301 1 421 330 34 46 chr1 23485039 23485102 -219179251 - MIR SINE MIR -8 254 192 983 162 32 16 chr1 23485102 23485287 -219179066 - MER53 DNA DNA -1 188 1 421 330 34 46 chr1 23485287 23485462 -219178891 - MIR SINE MIR -70 192 19 1094 238 18 0 chr1 23485654 23485877 -219178476 + MIR SINE MIR 16 242 -20 288 333 81 0 chr1 23485904 23486015 -219178338 - MIR3 SINE MIR -51 157 38 514 281 33 104 chr1 23486206 23486349 -219178004 - L2 LINE L2 -1 3271 3119 2254 112 0 22 chr1 23486349 23486662 -219177691 + AluSx SINE Alu 1 306 -6 1990 118 0 94 chr1 23486663 23486992 -219177361 + AluSq SINE Alu 1 298 -15 514 281 33 104 chr1 23486992 23487269 -219177084 - L2 LINE L2 -152 3120 2879 2423 115 25 6 chr1 23488100 23488457 -219175896 - THE1B LTR MaLR 0 364 1 204 297 27 14 chr1 23488531 23488605 -219175748 + L2 LINE L2 2409 2483 -831 273 291 110 1 chr1 23488617 23488750 -219175603 + MIR SINE MIR 33 178 -30 2279 130 0 0 chr1 23488843 23489150 -219175203 + AluSx SINE Alu 1 307 -5 191 292 26 53 chr1 23489469 23489582 -219174771 + MIR SINE MIR 150 259 -3 319 289 11 11 chr1 23489639 23489729 -219174624 + L2 LINE L2 3183 3272 0 2378 111 0 0 chr1 23489878 23490184 -219174169 + AluSx SINE Alu 1 306 -6 996 242 142 3 chr1 23490185 23490503 -219173850 - L2 LINE L2 -17 3296 2935 2273 81 0 3 chr1 23491078 23491393 -219172960 - AluSg SINE Alu 0 314 1 588 310 58 47 chr1 23491648 23491925 -219172428 - L1ME3 LINE L1 -336 5826 5539 743 200 0 29 chr1 23491925 23492095 -219172258 + L1PA16 LINE L1 5998 6162 -4 588 310 58 47 chr1 23492095 23492349 -219172004 - L1ME3 LINE L1 -623 5539 5289 807 224 33 61 chr1 23492474 23492719 -219171634 + MLT1J LTR MaLR 26 263 -248 401 220 167 65 chr1 23492813 23492875 -219171478 - L1ME3 LINE L1 -976 5170 5116 2473 63 3 0 chr1 23492875 23493174 -219171179 + AluY SINE Alu 1 300 -11 401 220 167 65 chr1 23493174 23493279 -219171074 - L1ME3 LINE L1 -1030 5116 4986 327 291 143 48 chr1 23493381 23493485 -219170868 - L1ME3 LINE L1 -2018 4128 4035 2421 73 0 13 chr1 23493485 23493787 -219170566 + AluSp SINE Alu 1 298 -15 327 291 143 48 chr1 23493787 23493892 -219170461 - L1ME3 LINE L1 -2111 4035 3899 226 309 0 0 chr1 23493994 23494075 -219170278 - L1ME3 LINE L1 -2410 3736 3656 921 166 7 13 chr1 23494082 23494233 -219170120 + AluJo SINE Alu 1 150 -162 265 256 23 15 chr1 23494312 23494445 -219169908 + CT-rich Low_complexity Low_complexity 5 138 0 385 260 12 17 chr1 23494462 23494635 -219169718 + CT-rich Low_complexity Low_complexity 5 176 0 589 180 41 25 chr1 23494752 23494874 -219169479 - FLAM_C SINE Alu -18 125 2 332 326 100 3 chr1 23494896 23495255 -219169098 - L1ME3 LINE L1 -3246 2900 2507 343 183 54 75 chr1 23495413 23495506 -219168847 + L1MC4 LINE L1 6613 6703 -1339 2223 110 10 0 chr1 23495561 23495853 -219168500 + AluSq SINE Alu 1 295 -18 378 283 100 44 chr1 23495903 23496083 -219168270 - L1MC4a LINE L1 -1577 6231 6042 411 207 60 40 chr1 23496140 23496290 -219168063 + LTR41 LTR ERVL 35 187 -586 251 282 56 0 chr1 23496466 23496537 -219167816 + LTR41 LTR ERVL 587 661 -112 790 212 66 10 chr1 23496537 23496735 -219167618 - MER3 DNA MER1_type 0 209 1 572 236 14 34 chr1 23496965 23497113 -219167240 + MER58B DNA MER1_type 197 341 0 481 169 0 0 chr1 23497140 23497217 -219167136 - MER2 DNA MER2_type 0 345 269 1802 53 0 5 chr1 23497256 23497463 -219166890 + AluY SINE Alu 1 206 -105 738 214 0 0 chr1 23497569 23497790 -219166563 + (TCCA)n Simple_repeat Simple_repeat 1 221 0 798 173 0 0 chr1 23497859 23498021 -219166332 + (TCCA)n Simple_repeat Simple_repeat 1 162 0 186 294 14 140 chr1 23498403 23498546 -219165807 + L2 LINE L2 3180 3304 -9 1360 183 11 68 chr1 23498548 23498827 -219165526 + AluJo SINE Alu 1 263 -49 219 405 0 8 chr1 23499178 23499309 -219165044 + MIR SINE MIR 9 138 -124 184 152 0 0 chr1 23499431 23499464 -219164889 + L2 LINE L2 3023 3055 -217 230 309 0 0 chr1 23499563 23499618 -219164735 + (CCCTAG)n Simple_repeat Simple_repeat 6 60 0 468 240 56 40 chr1 23500419 23500544 -219163809 + L2 LINE L2 3185 3311 -2 384 315 42 7 chr1 23500548 23500691 -219163662 - MIR SINE MIR -69 193 46 780 258 18 31 chr1 23501062 23501287 -219163066 - MIR SINE MIR -13 249 28 434 333 118 0 chr1 23501331 23501517 -219162836 + MIR SINE MIR 48 255 -7 2035 113 24 3 chr1 23501787 23502078 -219162275 - AluSq SINE Alu -12 301 5 247 150 50 67 chr1 23502395 23502455 -219161898 - MIR SINE MIR -62 146 88 289 277 11 49 chr1 23502919 23503103 -219161250 + GA-rich Low_complexity Low_complexity 1 177 0 190 152 0 61 chr1 23503118 23503184 -219161169 + (CAGAGA)n Simple_repeat Simple_repeat 6 67 0 2513 264 171 31 chr1 23503916 23505288 -219159065 - L2 LINE L2 -42 3271 1707 309 145 0 0 chr1 23505763 23505825 -219158528 + (CA)n Simple_repeat Simple_repeat 2 63 0 1270 214 55 7 chr1 23505885 23506194 -219158159 - MER46C DNA MER2_type 0 338 15 204 125 0 0 chr1 23506319 23506351 -219158002 + (TG)n Simple_repeat Simple_repeat 1 32 0 202 298 0 0 chr1 23506455 23506502 -219157851 - L3 LINE CR1 -72 1505 1459 238 148 37 0 chr1 23506605 23506659 -219157694 + CT-rich Low_complexity Low_complexity 2 57 0 627 207 0 8 chr1 23506849 23506970 -219157383 + AluJb SINE Alu 193 312 0 186 43 0 0 chr1 23506976 23506999 -219157354 + (GGAGAA)n Simple_repeat Simple_repeat 3 25 0 2338 93 3 22 chr1 23507000 23507311 -219157042 + AluY SINE Alu 1 305 -6 22 80 0 0 chr1 23507415 23507465 -219156888 + AT_rich Low_complexity Low_complexity 1 50 0 893 228 51 32 chr1 23507492 23507805 -219156548 - L1MD3 LINE L1 0 8042 7735 238 248 30 59 chr1 23508081 23508182 -219156171 - MIR SINE MIR -120 142 45 2332 97 3 3 chr1 23508817 23509117 -219155236 + AluSx SINE Alu 1 300 -12 246 228 0 0 chr1 23509137 23509194 -219155159 + L1ME LINE L1 5603 5659 -462 1983 108 4 21 chr1 23509512 23509791 -219154562 + AluSx SINE Alu 27 300 -12 800 166 7 14 chr1 23509825 23509964 -219154389 + FLAM_C SINE Alu 1 138 -5 2200 133 0 0 chr1 23509966 23510275 -219154078 + AluSx SINE Alu 1 309 -3 201 159 0 0 chr1 23510279 23510323 -219154030 + A-rich Low_complexity Low_complexity 1 44 0 770 265 81 63 chr1 23510366 23510886 -219153467 - L1ME4a LINE L1 -61 6060 5532 958 177 18 58 chr1 23510934 23511160 -219153193 - MER96B DNA MER1_type? -2 415 199 1971 130 50 13 chr1 23511410 23511711 -219152642 + AluJb SINE Alu 1 312 0 248 100 25 0 chr1 23511972 23512012 -219152341 + MER96B DNA MER1_type? 190 230 -187 183 129 0 0 chr1 23512066 23512097 -219152256 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 447 318 35 18 chr1 23512206 23512376 -219151977 + MIR SINE MIR 53 225 -37 208 287 113 40 chr1 23512421 23512571 -219151782 - L2 LINE L2 -3 3310 3150 517 210 14 0 chr1 23513033 23513171 -219151182 + GA-rich Low_complexity Low_complexity 4 143 0 350 221 90 0 chr1 23513210 23513332 -219151021 + L1ME4a LINE L1 5947 6079 -42 1953 153 10 3 chr1 23513368 23513675 -219150678 + AluSx SINE Alu 1 309 -3 231 36 0 0 chr1 23514298 23514326 -219150027 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 344 286 201 0 chr1 23515260 23515418 -219148935 - MIR SINE MIR -65 143 11 751 177 6 6 chr1 23515756 23515931 -219148422 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 716 155 6 23 chr1 23515958 23516132 -219148221 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 545 163 7 26 chr1 23516150 23516303 -219148050 + (TGGA)n Simple_repeat Simple_repeat 1 150 0 1112 127 13 0 chr1 23519024 23519181 -219145172 - AluSg/x SINE Alu -21 289 131 433 121 0 0 chr1 23519181 23519239 -219145114 - AluS SINE Alu -254 59 2 1616 151 9 78 chr1 23519278 23519597 -219144756 - AluJo SINE Alu -1 311 15 483 299 34 20 chr1 23519605 23519809 -219144544 + L1ME LINE L1 5561 5767 -354 235 36 0 0 chr1 23519809 23519837 -219144516 + MER41A LTR ERV1 400 427 -127 2407 100 0 0 chr1 23519837 23520148 -219144205 - AluSx SINE Alu -1 311 1 2334 115 0 10 chr1 23520801 23521115 -219143238 + AluSx SINE Alu 1 311 -1 1199 74 0 0 chr1 23521119 23521267 -219143086 + AluYa5 SINE Alu 136 283 -28 396 311 136 57 chr1 23521274 23521798 -219142555 + L2 LINE L2 1696 2260 -1054 221 275 109 74 chr1 23521798 23522027 -219142326 + L2 LINE L2 2715 2951 -363 1874 158 0 42 chr1 23522155 23522466 -219141887 - AluSx SINE Alu -14 298 1 234 0 0 0 chr1 23522592 23522618 -219141735 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 2103 98 0 11 chr1 23523122 23523397 -219140956 + AluSq SINE Alu 40 311 -2 568 317 221 16 chr1 23523472 23523784 -219140569 + L3 LINE CR1 431 806 -771 2134 94 35 11 chr1 23523939 23524226 -219140127 + AluSx SINE Alu 1 294 -18 1967 145 14 0 chr1 23524254 23524543 -219139810 + AluJo SINE Alu 1 293 -19 692 229 22 45 chr1 23524543 23524766 -219139587 + L1MC5 LINE L1 7714 7931 -30 336 164 149 0 chr1 23525350 23525417 -219138936 - MER45A DNA AcHobo -1 177 101 1953 142 0 39 chr1 23525897 23526058 -219138295 - AluJo SINE Alu -15 297 152 2153 120 10 32 chr1 23526058 23526366 -219137987 - AluSx SINE Alu -11 301 1 1953 142 0 39 chr1 23526366 23526513 -219137840 - AluJo SINE Alu -160 152 1 515 254 108 0 chr1 23527638 23527768 -219136585 - L2 LINE L2 -7 3265 3122 218 250 60 36 chr1 23528445 23528529 -219135824 + MIR SINE MIR 127 212 -50 2242 107 0 0 chr1 23528768 23529058 -219135295 - AluSc SINE Alu -19 290 1 221 186 186 49 chr1 23529727 23529829 -219134524 + MIR SINE MIR 113 228 -34 307 170 0 0 chr1 23529846 23529893 -219134460 + L1PA16 LINE L1 6037 6083 -83 2270 98 0 13 chr1 23530201 23530508 -219133845 - AluY SINE Alu -8 303 1 2469 57 7 0 chr1 23530934 23531232 -219133121 - AluSp SINE Alu -13 300 1 870 293 29 0 chr1 23531463 23531705 -219132648 - MIR SINE MIR 0 262 14 473 191 129 52 chr1 23532154 23532364 -219131989 - L1ME4a LINE L1 -292 5829 5604 2204 120 0 0 chr1 23532660 23532959 -219131394 - AluSx SINE Alu -13 299 1 1867 163 17 0 chr1 23532996 23533296 -219131057 + AluJo SINE Alu 1 305 -7 329 255 265 29 chr1 23533296 23533489 -219130864 - MIR SINE MIR -6 256 11 21 82 0 0 chr1 23533589 23533638 -219130715 + AT_rich Low_complexity Low_complexity 1 49 0 1790 160 0 70 chr1 23533650 23533981 -219130372 - AluJo SINE Alu -2 310 3 1659 203 0 10 chr1 23534006 23534312 -219130041 - AluJo SINE Alu -7 305 3 988 216 0 0 chr1 23534497 23534668 -219129685 - FAM SINE Alu -4 171 1 1989 113 68 0 chr1 23534729 23535021 -219129332 - AluSx SINE Alu 0 312 1 433 321 62 42 chr1 23535263 23535440 -219128913 + MIR3 SINE MIR 3 183 -25 788 236 78 21 chr1 23536560 23536779 -219127574 + MIR SINE MIR 5 228 -34 2965 163 17 36 chr1 23536876 23537369 -219126984 - LTR53 LTR ERVL 0 519 35 1877 137 13 30 chr1 23537369 23537669 -219126684 - AluJb SINE Alu -17 295 1 2965 163 17 36 chr1 23537669 23537704 -219126649 - LTR53 LTR ERVL -484 35 1 505 221 182 7 chr1 23538327 23538481 -219125872 + MER5A DNA MER1_type 9 189 0 439 302 140 9 chr1 23538484 23538706 -219125647 + MIR SINE MIR 12 262 0 469 252 24 3 chr1 23539044 23539170 -219125183 + MIR SINE MIR 47 175 -33 262 246 0 18 chr1 23539891 23539948 -219124405 + MIR3 SINE MIR 102 157 -51 1738 144 32 11 chr1 23541419 23541703 -219122650 - AluJb SINE Alu -22 290 1 22 0 0 0 chr1 23542315 23542337 -219122016 + AT_rich Low_complexity Low_complexity 1 22 0 222 222 37 19 chr1 23542480 23542534 -219121819 - MIR SINE MIR 0 262 208 2058 89 4 4 chr1 23542589 23542860 -219121493 + AluSc SINE Alu 38 308 -1 685 88 0 11 chr1 23542939 23543030 -219121323 - AluJ/FLAM SINE Alu -221 91 2 1264 200 15 48 chr1 23543302 23543424 -219120929 + MIR SINE MIR 1 126 -136 2495 66 3 0 chr1 23543424 23543728 -219120625 - AluY SINE Alu -6 305 1 1264 200 15 48 chr1 23543728 23543875 -219120478 + MIR SINE MIR 126 261 -1 1154 207 48 51 chr1 23543967 23544319 -219120034 - L1ME2 LINE L1 -2 6145 5795 799 206 53 18 chr1 23544315 23544485 -219119868 - L1ME2 LINE L1 -568 5579 5404 * 360 318 58 13 chr1 23544606 23544799 -219119554 - L1MCa LINE L1 -898 1889 1443 536 241 88 58 chr1 23544815 23545076 -219119277 - L1MCa LINE L1 -4910 1506 1238 2009 114 7 17 chr1 23545089 23545388 -219118965 - AluSx SINE Alu -16 296 1 372 265 127 24 chr1 23545388 23545641 -219118712 - L1ME2 LINE L1 -864 5265 4987 183 80 0 0 chr1 23545677 23545702 -219118651 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1188 23 0 0 chr1 23545702 23545832 -219118521 - AluY SINE Alu -181 130 1 807 296 78 49 chr1 23545891 23546401 -219117952 - L1ME2 LINE L1 -5547 572 48 252 0 0 0 chr1 23546970 23546998 -219117355 + (A)n Simple_repeat Simple_repeat 1 28 0 35 0 0 0 chr1 23547099 23547134 -219117219 + AT_rich Low_complexity Low_complexity 1 35 0 5987 224 68 15 chr1 23547489 23547972 -219116381 - L1MC1 LINE L1 -1 6612 6156 2502 45 0 26 chr1 23547972 23548280 -219116073 + AluY SINE Alu 1 300 -11 5987 224 68 15 chr1 23548280 23550608 -219113745 - L1MC1 LINE L1 -457 6156 3645 7212 156 62 25 chr1 23550706 23551896 -219112457 - L1MC1 LINE L1 -4963 1463 209 2045 120 3 0 chr1 23551896 23552217 -219112136 - AluSx SINE Alu 0 322 1 7212 156 62 25 chr1 23552217 23552433 -219111920 - L1MC1 LINE L1 -6217 209 3 371 354 123 44 chr1 23552630 23553215 -219111138 + L2 LINE L2 2347 2977 -337 2788 255 110 35 chr1 23553363 23554625 -219109728 - L2 LINE L2 0 3313 1938 403 346 28 11 chr1 23554728 23554910 -219109443 + MIR SINE MIR 78 262 0 213 39 0 0 chr1 23556065 23556091 -219108262 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2280 85 0 4 chr1 23556096 23556377 -219107976 - AluSg SINE Alu -30 280 1 607 302 78 12 chr1 23557179 23557424 -219106929 - MIR SINE MIR 0 262 2 183 42 0 0 chr1 23558614 23558638 -219105715 + (TC)n Simple_repeat Simple_repeat 1 24 0 1084 188 49 163 chr1 23558658 23559114 -219105239 - L1ME1 LINE L1 -6 6160 5754 532 245 82 0 chr1 23559114 23559273 -219105080 + MIR SINE MIR 75 246 -16 461 326 22 28 chr1 23559581 23559759 -219104594 - MER5A DNA MER1_type -9 180 4 249 280 90 30 chr1 23559885 23559985 -219104368 - L2 LINE L2 -5 3267 3162 2216 97 0 14 chr1 23560675 23560998 -219103355 - AluSx SINE Alu 0 319 1 339 274 24 0 chr1 23561046 23561130 -219103223 + MIR SINE MIR 55 140 -122 529 250 79 38 chr1 23561760 23562000 -219102353 - MLT1K LTR MaLR -46 542 293 817 168 8 44 chr1 23562022 23562277 -219102076 - MLT2B3 LTR ERVL -83 460 225 254 119 0 24 chr1 23562746 23562788 -219101565 - L2 LINE L2 -5 3308 3268 371 214 141 7 chr1 23562914 23563048 -219101305 + MIR SINE MIR 33 183 -79 1659 215 91 48 chr1 23564111 23564629 -219099724 - MLT1F1 LTR MaLR 0 567 4 210 335 78 30 chr1 23565590 23565757 -219098596 - L2 LINE L2 -1090 2224 2050 472 304 159 14 chr1 23566225 23566445 -219097908 - L2 LINE L2 -3 3269 3018 192 324 105 29 chr1 23567452 23567557 -219096796 + L2 LINE L2 3122 3234 -38 597 154 0 0 chr1 23567829 23567939 -219096414 + (TGGA)n Simple_repeat Simple_repeat 4 113 0 931 247 53 18 chr1 23568212 23568495 -219095858 - L1ME4a LINE L1 -295 5826 5534 195 42 0 0 chr1 23568790 23568814 -219095539 + (CA)n Simple_repeat Simple_repeat 1 24 0 640 261 86 21 chr1 23569536 23569770 -219094583 - MIR SINE MIR -4 258 10 554 261 21 28 chr1 23569893 23570035 -219094318 - MIR SINE MIR -111 151 11 804 272 63 8 chr1 23572280 23572519 -219091834 + MIR SINE MIR 5 256 -6 271 226 0 108 chr1 23572565 23572658 -219091695 - L1ME LINE L1 -440 5681 5599 216 313 0 15 chr1 23573309 23573376 -219090977 + GA-rich Low_complexity Low_complexity 1 66 0 2216 116 0 7 chr1 23574521 23574831 -219089522 - AluSx SINE Alu -4 308 1 342 353 21 13 chr1 23574881 23575032 -219089321 - MIR SINE MIR -65 143 37 213 358 37 15 chr1 23577488 23577622 -219086731 + MIR SINE MIR 111 247 -15 1409 119 36 5 chr1 23578408 23578627 -219085726 + L1MA1 LINE L1 6075 6300 -2 1997 98 0 4 chr1 23578644 23578909 -219085444 + AluY SINE Alu 44 307 -4 248 122 0 20 chr1 23579029 23579078 -219085275 - MADE1 DNA Mariner 0 80 33 1003 289 144 13 chr1 23579423 23580067 -219084286 + L2 LINE L2 2592 3313 0 * 1423 243 71 129 chr1 23580038 23580538 -219083815 - L2 LINE L2 -9 3304 2777 2482 163 105 4 chr1 23580538 23580997 -219083356 - MLT1D LTR MaLR 0 505 1 1423 243 71 129 chr1 23580997 23581447 -219082906 - L2 LINE L2 -536 2777 2334 288 60 100 40 chr1 23581447 23581497 -219082856 - MLT1D LTR MaLR 0 505 453 1423 243 71 129 chr1 23581497 23581700 -219082653 - L2 LINE L2 -979 2334 2121 180 0 0 0 chr1 23583363 23583383 -219080970 + (CACAG)n Simple_repeat Simple_repeat 3 22 0 674 305 16 28 chr1 23583388 23583637 -219080716 + MIR SINE MIR 17 262 0 187 301 53 35 chr1 23583818 23583931 -219080422 - L2 LINE L2 -2 3270 3156 716 225 51 34 chr1 23584542 23584778 -219079575 + MIR SINE MIR 23 262 0 474 354 101 13 chr1 23586269 23586506 -219077847 + MIR SINE MIR 5 262 0 404 363 38 14 chr1 23587123 23587335 -219077018 + MIR SINE MIR 46 262 0 385 303 0 0 chr1 23587260 23587359 -219076994 - MIR SINE MIR -1 261 163 * 259 220 0 0 chr1 23587360 23587410 -219076943 - MIR SINE MIR -209 53 4 584 265 34 0 chr1 23587669 23587816 -219076537 + MIR SINE MIR 32 183 -79 1153 129 0 6 chr1 23587946 23588116 -219076237 - AluSg/x SINE Alu -10 302 134 2508 49 0 13 chr1 23588128 23588433 -219075920 - AluY SINE Alu -10 301 1 1665 205 135 9 chr1 23588433 23588965 -219075388 - HsTC2 DNA Tc2 -35 1863 1265 303 241 232 0 chr1 23588966 23589078 -219075275 - HsTC2 DNA Tc2 -1760 138 1 713 183 104 37 chr1 23589124 23589288 -219075065 + MER69A DNA AcHobo 1 175 -2 1737 139 17 43 chr1 23593717 23594018 -219070335 - AluJo SINE Alu -19 293 1 431 282 48 77 chr1 23596083 23596292 -219068061 + MIR SINE MIR 3 205 -57 207 285 190 19 chr1 23597009 23597112 -219067241 + MIR SINE MIR 5 101 -107 250 283 14 101 chr1 23598998 23599136 -219065217 + L2 LINE L2 3142 3267 -5 183 80 0 0 chr1 23599312 23599337 -219065016 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 2158 109 7 7 chr1 23599388 23599691 -219064662 + AluSx SINE Alu 1 303 -9 708 305 71 4 chr1 23599700 23599753 -219064600 - MIR SINE MIR -2 260 212 2067 133 0 13 chr1 23599753 23600062 -219064291 - AluSx SINE Alu -7 305 1 708 305 71 4 chr1 23600062 23600247 -219064106 - MIR SINE MIR -50 212 6 2568 79 20 14 chr1 23600895 23601250 -219063103 - L1PA13 LINE L1 0 6163 5807 273 352 67 43 chr1 23601473 23601683 -219062670 - MIR SINE MIR -46 216 2 245 360 68 31 chr1 23601700 23601861 -219062492 - MIR SINE MIR -44 218 52 772 221 149 11 chr1 23602038 23602219 -219062134 + MER3 DNA MER1_type 4 209 0 192 292 62 15 chr1 23602244 23602309 -219062044 - MIR SINE MIR -170 92 25 279 228 68 0 chr1 23602575 23602661 -219061692 - MIR SINE MIR -62 146 66 200 276 295 0 chr1 23603076 23603181 -219061172 + MIR3 SINE MIR 69 204 -4 227 267 221 0 chr1 23603190 23603276 -219061077 + MIR SINE MIR 35 139 -69 352 294 73 7 chr1 23603787 23603923 -219060430 + MIR SINE MIR 2 146 -116 813 166 43 6 chr1 23604658 23604821 -219059532 - L1MB3 LINE L1 -3 6180 6012 408 222 38 48 chr1 23604822 23604995 -219059358 - L1MB2 LINE L1 -135 6049 5890 1863 134 16 29 chr1 23605000 23605306 -219059047 - AluJb SINE Alu -9 303 2 1273 273 140 12 chr1 23605459 23606054 -219058299 - L2 LINE L2 -19 3294 2617 442 182 101 0 chr1 23606054 23606153 -219058200 + Cheshire DNA MER1_type 657 765 -1655 521 262 77 32 chr1 23606185 23606406 -219057947 - L2 LINE L2 -787 2527 2297 223 318 34 23 chr1 23606717 23606805 -219057548 + MIR3 SINE MIR 109 197 -11 399 218 95 28 chr1 23607056 23607173 -219057180 + MER106B DNA MER1_type 28 136 -923 2282 112 0 0 chr1 23607173 23607485 -219056868 + AluSx SINE Alu 1 312 0 399 218 95 28 chr1 23607485 23607555 -219056798 + MER106B DNA MER1_type 136 1057 -2 260 299 88 48 chr1 23607607 23607754 -219056599 - L2 LINE L2 -47 3225 3073 279 399 29 7 chr1 23608046 23608184 -219056169 + MIR3 SINE MIR 2 142 -66 445 201 158 14 chr1 23608267 23608406 -219055947 - MIR SINE MIR -55 207 49 339 245 43 58 chr1 23608914 23609053 -219055300 + L2 LINE L2 2913 3049 -223 398 276 89 0 chr1 23609210 23609333 -219055020 - MIR SINE MIR -98 164 31 493 301 111 65 chr1 23609397 23609532 -219054821 + L2 LINE L2 3020 3147 -166 2146 114 0 3 chr1 23609532 23609829 -219054524 + AluSx SINE Alu 1 296 -16 493 301 111 65 chr1 23609829 23609972 -219054381 + L2 LINE L2 3147 3311 -2 359 314 105 0 chr1 23610019 23610172 -219054181 - MIR SINE MIR -75 187 19 287 294 22 0 chr1 23610702 23610794 -219053559 + MIR3 SINE MIR 101 194 -14 486 235 8 0 chr1 23610803 23610922 -219053431 - MER3 DNA MER1_type 0 2624 2505 381 206 0 0 chr1 23610923 23610996 -219053357 - MER3 DNA MER1_type -97 112 40 270 325 0 0 chr1 23611340 23611420 -219052933 - MIR SINE MIR -32 230 151 1085 158 0 0 chr1 23611424 23611588 -219052765 + FRAM SINE Alu 1 164 -12 24 0 0 0 chr1 23611608 23611632 -219052721 + AT_rich Low_complexity Low_complexity 1 24 0 226 229 16 16 chr1 23611634 23611695 -219052658 - MIR SINE MIR -104 158 98 414 0 0 0 chr1 23611756 23611802 -219052551 + (TG)n Simple_repeat Simple_repeat 2 47 0 325 347 44 49 chr1 23612368 23612593 -219051760 - L1MEd LINE L1 -4941 1178 955 541 198 6 6 chr1 23612594 23612751 -219051602 + CT-rich Low_complexity Low_complexity 1 157 0 841 191 4 4 chr1 23612772 23613324 -219051029 + CT-rich Low_complexity Low_complexity 1 552 0 390 291 199 15 chr1 23613875 23614071 -219050282 + MIR SINE MIR 28 259 -3 2153 91 0 3 chr1 23614189 23614475 -219049878 - AluSx SINE Alu -27 285 1 310 222 0 0 chr1 23614475 23614538 -219049815 - MIR SINE MIR -38 224 162 837 162 15 0 chr1 23614540 23614676 -219049677 - AluSq/x SINE Alu -174 138 1 389 187 13 0 chr1 23614676 23614751 -219049602 - MIR SINE MIR -99 163 88 189 239 22 0 chr1 23615575 23615621 -219048732 - L2 LINE L2 -1 3312 3266 349 215 86 11 chr1 23616347 23616440 -219047913 - MIR SINE MIR -66 142 43 354 263 21 100 chr1 23617844 23618084 -219046269 - L2 LINE L2 -169 3103 2883 248 319 0 0 chr1 23618991 23619063 -219045290 + MIR SINE MIR 50 121 -141 419 218 50 10 chr1 23619318 23619419 -219044934 + MIR SINE MIR 16 120 -88 235 288 144 15 chr1 23619518 23619650 -219044703 + L2 LINE L2 3121 3269 -3 330 26 0 0 chr1 23620208 23620231 -219044122 + (CA)n Simple_repeat Simple_repeat 1 62 0 330 26 0 0 chr1 23620231 23620270 -219044083 + (CA)n Simple_repeat Simple_repeat 1 39 0 434 272 56 31 chr1 23620563 23620725 -219043628 - MIR SINE MIR -74 188 23 541 265 38 43 chr1 23621100 23621285 -219043068 + MIR SINE MIR 15 198 -64 279 208 0 0 chr1 23621354 23621407 -219042946 - MIR SINE MIR -90 118 66 484 287 34 106 chr1 23621869 23622284 -219042069 - L2 LINE L2 -513 2801 2417 185 235 118 0 chr1 23623125 23623176 -219041177 + L3 LINE CR1 1518 1574 -3 2133 120 0 7 chr1 23623256 23623555 -219040798 + AluSq SINE Alu 1 297 -16 365 317 78 14 chr1 23623644 23623786 -219040567 + L2 LINE L2 3163 3313 0 287 172 26 86 chr1 23623830 23623865 -219040488 + Charlie5 DNA MER1_type 2472 2508 -77 2351 105 0 0 chr1 23623865 23624178 -219040175 - AluSq SINE Alu 0 313 1 287 172 26 86 chr1 23624178 23624258 -219040095 + Charlie5 DNA MER1_type 2508 2580 -5 480 237 35 9 chr1 23624962 23625076 -219039277 - MIR SINE MIR -46 216 100 281 306 99 8 chr1 23625457 23625578 -219038775 - L2 LINE L2 0 3272 3141 1811 146 19 44 chr1 23626436 23626751 -219037602 - AluJb SINE Alu -5 307 1 264 269 99 14 chr1 23626904 23627045 -219037308 + Charlie8 DNA MER1_type 69 221 -2196 315 317 25 17 chr1 23627114 23627234 -219037119 - L3 LINE CR1 -45 1532 1412 450 313 130 19 chr1 23627307 23627515 -219036838 + MIR SINE MIR 20 250 -12 365 268 41 0 chr1 23627971 23628068 -219036285 - MIR SINE MIR -82 180 80 180 0 0 0 chr1 23628637 23628657 -219035696 + (CGG)n Simple_repeat Simple_repeat 2 21 0 39 38 0 0 chr1 23628787 23628840 -219035513 + GC_rich Low_complexity Low_complexity 1 53 0 266 212 25 25 chr1 23628864 23628982 -219035371 + (CGG)n Simple_repeat Simple_repeat 1 118 0 270 248 29 86 chr1 23631661 23631766 -219032587 - MIR SINE MIR -69 193 95 274 268 43 73 chr1 23633046 23633210 -219031143 - MIR3 SINE MIR -11 197 39 243 248 291 21 chr1 23633347 23633488 -219030865 - MIR SINE MIR -76 186 8 521 325 50 10 chr1 23633645 23633845 -219030508 + MIR SINE MIR 53 260 -2 186 346 62 0 chr1 23633863 23633944 -219030409 - L2 LINE L2 -11 3261 3176 607 259 17 7 chr1 23634012 23634193 -219030160 - MIR SINE MIR -58 150 2 325 118 15 44 chr1 23634612 23634680 -219029673 - MIR SINE MIR -71 137 72 532 294 68 4 chr1 23635103 23635337 -219029016 + MIR SINE MIR 11 261 -1 366 326 0 0 chr1 23635420 23635595 -219028758 + (CA)n Simple_repeat Simple_repeat 2 176 0 510 289 15 43 chr1 23636464 23636678 -219027675 - MIR SINE MIR -45 217 6 234 258 15 15 chr1 23636883 23636949 -219027404 - MER5A DNA MER1_type -77 112 47 183 345 45 55 chr1 23636929 23636950 -219027403 + L3b LINE CR1 1469 1489 -94 * 1671 152 85 0 chr1 23636950 23637233 -219027120 + AluJb SINE Alu 1 307 -5 183 345 45 55 chr1 23637233 23637321 -219027032 + L3b LINE CR1 1489 1577 -6 275 247 90 11 chr1 23637440 23637529 -219026824 + MIR SINE MIR 63 158 -104 263 290 29 80 chr1 23637782 23637919 -219026434 - MIR SINE MIR -62 146 69 397 293 27 14 chr1 23638473 23638620 -219025733 - MIR SINE MIR -12 250 102 2337 68 0 3 chr1 23639166 23639461 -219024892 - AluY SINE Alu -17 294 1 4384 166 39 15 chr1 23639478 23640142 -219024211 - L1MB3 LINE L1 0 6183 5486 2173 113 0 0 chr1 23640142 23640433 -219023920 - AluSx SINE Alu -21 291 1 4384 166 39 15 chr1 23640433 23640750 -219023603 - L1MB3 LINE L1 -697 5486 5178 289 344 0 11 chr1 23640929 23641022 -219023331 - L2 LINE L2 -558 2756 2665 183 280 40 27 chr1 23641270 23641345 -219023008 + L2 LINE L2 3198 3273 -40 1013 198 39 0 chr1 23642412 23642619 -219021734 - MIR SINE MIR -35 227 13 438 219 0 0 chr1 23642942 23643047 -219021306 + (TG)n Simple_repeat Simple_repeat 1 105 0 680 225 0 3 chr1 23643071 23643434 -219020919 + (TG)n Simple_repeat Simple_repeat 1 361 0 431 275 0 11 chr1 23643497 23643679 -219020674 + (TG)n Simple_repeat Simple_repeat 1 180 0 522 275 2 0 chr1 23643692 23644204 -219020149 + (TG)n Simple_repeat Simple_repeat 1 513 0 250 167 42 0 chr1 23644209 23644257 -219020096 + (TATG)n Simple_repeat Simple_repeat 4 53 0 274 154 0 0 chr1 23644259 23644311 -219020042 + MER4-int LTR ERV1 1111 1162 -5436 411 289 0 0 chr1 23644314 23644487 -219019866 + (TG)n Simple_repeat Simple_repeat 2 174 0 * 499 243 0 17 chr1 23644458 23644639 -219019714 + (TATG)n Simple_repeat Simple_repeat 1 178 0 260 292 15 0 chr1 23644639 23644704 -219019649 + (CGTG)n Simple_repeat Simple_repeat 3 68 0 2355 86 3 3 chr1 23645308 23645621 -219018732 - AluSq SINE Alu 0 313 1 425 279 118 0 chr1 23645880 23646016 -219018337 - MIR SINE MIR -52 210 59 329 239 133 62 chr1 23646256 23646416 -219017937 - MIR SINE MIR -74 188 4 270 330 9 19 chr1 23646679 23646785 -219017568 - MIR SINE MIR -56 152 48 410 226 85 9 chr1 23647750 23647856 -219016497 - MIR SINE MIR -65 143 30 311 320 123 0 chr1 23648666 23648788 -219015565 + MIR SINE MIR 44 180 -82 469 284 75 40 chr1 23648794 23648995 -219015358 - MIR SINE MIR -33 229 22 345 314 31 106 chr1 23650006 23650429 -219013924 - L2 LINE L2 -27 3245 2855 190 303 123 8 chr1 23650698 23650820 -219013533 + L2 LINE L2 3137 3272 0 211 341 114 0 chr1 23650998 23651130 -219013223 + MER5A DNA MER1_type 38 184 -5 331 339 18 0 chr1 23651422 23651531 -219012822 + MIR SINE MIR 45 155 -107 572 204 70 14 chr1 23654647 23654789 -219009564 + MIR SINE MIR 102 251 -11 300 267 105 19 chr1 23655112 23655217 -219009136 - MIR SINE MIR -119 143 30 234 361 14 0 chr1 23655287 23655359 -219008994 - L2 LINE L2 0 3313 3241 458 321 211 22 chr1 23655500 23656039 -219008314 + L2 LINE L2 1689 2329 -985 976 96 0 0 chr1 23656290 23656415 -219007938 + AluJo/FLAM SINE Alu 1 125 -187 1719 165 14 0 chr1 23656417 23656702 -219007651 - AluJb SINE Alu -22 290 2 327 370 118 14 chr1 23656831 23657247 -219007106 + L2 LINE L2 2830 3288 -25 340 318 62 4 chr1 23657493 23657679 -219006674 - MIR SINE MIR -62 146 1 2152 109 0 0 chr1 23659019 23659313 -219005040 - AluSg SINE Alu -16 294 1 969 114 8 0 chr1 23659318 23659450 -219004903 - AluSq/x SINE Alu -179 133 1 733 213 53 12 chr1 23659561 23659730 -219004623 + MER5A DNA MER1_type 14 189 0 378 351 40 17 chr1 23659902 23660076 -219004277 + MIR SINE MIR 41 218 -44 543 322 57 9 chr1 23660596 23660807 -219003546 - MIR SINE MIR -32 230 10 261 299 13 0 chr1 23660889 23660966 -219003387 - MIR SINE MIR -64 144 67 390 245 58 32 chr1 23661720 23661809 -219002544 - MER117 DNA MER1_type -37 160 63 1929 128 14 0 chr1 23661809 23662140 -219002213 - AluSx SINE Alu 0 335 1 390 245 58 32 chr1 23662140 23662204 -219002149 - MER117 DNA MER1_type -134 63 2 416 291 14 80 chr1 23663697 23663910 -219000443 + MIR SINE MIR 51 249 -13 881 180 0 6 chr1 23664780 23664958 -218999395 + GA-rich Low_complexity Low_complexity 2 178 0 223 118 78 0 chr1 23664971 23665022 -218999331 + GA-rich Low_complexity Low_complexity 3 57 0 859 151 0 27 chr1 23665041 23665226 -218999127 + GA-rich Low_complexity Low_complexity 1 180 0 894 146 23 7 chr1 23665253 23665557 -218998796 + GA-rich Low_complexity Low_complexity 1 309 0 310 302 60 17 chr1 23667928 23668044 -218996309 - MIR3 SINE MIR -47 161 41 204 333 173 7 chr1 23669542 23669692 -218994661 - MIR SINE MIR -54 208 34 231 322 75 98 chr1 23669838 23670133 -218994220 - L2 LINE L2 -4 3268 2981 1149 315 72 22 chr1 23670196 23671280 -218993073 + L1ME3 LINE L1 4507 5673 -489 1381 237 101 14 chr1 23671280 23671698 -218992655 - LTR16A1 LTR ERVL -2 455 2 1149 315 72 22 chr1 23671698 23671988 -218992365 + L1ME3 LINE L1 5673 5947 -215 549 114 23 0 chr1 23672252 23672340 -218992013 + L1MC2 LINE L1 6253 6342 -2 790 319 62 3 chr1 23672529 23672867 -218991486 + L2 LINE L2 2502 2859 -455 1396 197 72 14 chr1 23672879 23673048 -218991305 - AluJb SINE Alu -5 307 113 262 0 26 26 chr1 23673048 23673087 -218991266 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1396 197 72 14 chr1 23673087 23673207 -218991146 - AluJb SINE Alu -199 113 1 260 363 101 56 chr1 23673235 23673662 -218990691 + L2 LINE L2 2809 3254 -18 418 303 42 14 chr1 23673745 23673887 -218990466 + MIR SINE MIR 84 229 -33 814 304 9 5 chr1 23674739 23674953 -218989400 - MIR SINE MIR -13 249 35 1857 170 0 13 chr1 23675147 23675583 -218988770 - AluJo SINE Alu 0 436 5 771 174 0 30 chr1 23675864 23675996 -218988357 + AluJb SINE Alu 7 134 -178 234 0 0 0 chr1 23676021 23676047 -218988306 + (A)n Simple_repeat Simple_repeat 1 26 0 228 256 35 12 chr1 23676050 23676136 -218988217 + (TG)n Simple_repeat Simple_repeat 2 89 0 273 233 17 0 chr1 23676535 23676595 -218987758 - MIR SINE MIR -108 154 94 409 335 147 20 chr1 23677154 23677447 -218986906 + L3 LINE CR1 1119 1448 -129 687 256 26 21 chr1 23677520 23677711 -218986642 - MIR SINE MIR -64 198 7 426 326 156 18 chr1 23678121 23678345 -218986008 + MIR SINE MIR 8 262 0 387 315 0 0 chr1 23678855 23678966 -218985387 + MIR SINE MIR 80 190 -72 403 288 19 0 chr1 23679482 23679642 -218984711 + (TCTG)n Simple_repeat Simple_repeat 3 165 0 2257 107 0 0 chr1 23680321 23680621 -218983732 - AluSc SINE Alu -9 300 1 198 315 55 14 chr1 23680689 23680762 -218983591 + L2 LINE L2 3193 3268 -4 206 333 43 0 chr1 23680767 23680836 -218983517 + L2 LINE L2 3195 3266 -6 222 37 0 0 chr1 23680850 23680877 -218983476 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 533 229 0 0 chr1 23681248 23681369 -218982984 - MIR SINE MIR -63 145 40 537 226 15 30 chr1 23681453 23681586 -218982767 + L2 LINE L2 3183 3313 0 290 288 73 9 chr1 23681741 23681868 -218982485 - MIR SINE MIR -65 143 9 468 333 48 14 chr1 23682371 23682581 -218981772 - MIR SINE MIR -33 229 13 326 345 6 51 chr1 23682664 23682841 -218981512 + MIR3 SINE MIR 16 184 -24 241 208 19 0 chr1 23682981 23683034 -218981319 - MIR SINE MIR -81 127 74 221 233 0 9 chr1 23683112 23683188 -218981165 + T-rich Low_complexity Low_complexity 1 75 0 344 292 62 0 chr1 23684203 23684316 -218980037 + MIR SINE MIR 25 144 -118 202 268 0 18 chr1 23684403 23684459 -218979894 + C-rich Low_complexity Low_complexity 5 59 0 375 219 37 0 chr1 23684475 23684557 -218979796 + MIR SINE MIR 108 192 -70 437 215 47 116 chr1 23684693 23684865 -218979488 - L1ME3 LINE L1 -35 6127 5968 2265 96 0 0 chr1 23685759 23686085 -218978268 - AluSx SINE Alu 0 326 1 307 254 0 0 chr1 23686142 23686209 -218978144 - MIR SINE MIR -61 147 81 211 236 170 38 chr1 23686336 23686442 -218977911 - MIR3 SINE MIR -74 134 15 2036 120 0 0 chr1 23686582 23686890 -218977463 - AluSx SINE Alu 0 308 1 790 323 5 0 chr1 23687632 23687855 -218976498 - MIR SINE MIR 0 262 39 1535 155 28 38 chr1 23688072 23688230 -218976123 - AluJo SINE Alu -19 293 138 2030 125 13 0 chr1 23688230 23688533 -218975820 - AluSq SINE Alu -4 309 3 1535 155 28 38 chr1 23688533 23688665 -218975688 - AluJo SINE Alu -174 138 6 923 94 0 8 chr1 23688763 23688878 -218975475 + AluSx SINE Alu 1 116 -197 405 0 0 0 chr1 23688878 23688923 -218975430 + (CTA)n Simple_repeat Simple_repeat 1 45 0 923 94 0 8 chr1 23688923 23688935 -218975418 + AluSx SINE Alu 116 127 -186 2050 144 48 129 chr1 23689267 23689510 -218974843 + L1MB3 LINE L1 5684 5860 -323 1815 89 12 4 chr1 23689510 23689756 -218974597 + AluSx SINE Alu 2 249 -63 2050 144 48 129 chr1 23689756 23690055 -218974298 + L1MB3 LINE L1 5860 6182 -1 606 278 37 37 chr1 23690174 23690365 -218973988 + MIR SINE MIR 8 198 -64 555 307 24 28 chr1 23690362 23690574 -218973779 - MIR SINE MIR -1 261 51 * 384 274 92 7 chr1 23691064 23691245 -218973108 - MLT1I LTR MaLR 0 428 269 207 269 104 30 chr1 23692566 23692700 -218971653 + MER5A DNA MER1_type 24 167 -22 208 213 98 16 chr1 23692716 23692777 -218971576 - MIR3 SINE MIR -53 155 90 350 141 248 50 chr1 23693100 23693221 -218971132 - MER53 DNA DNA -44 145 1 285 286 92 8 chr1 23693226 23693345 -218971008 + MIR SINE MIR 89 217 -45 2095 110 0 3 chr1 23693529 23693821 -218970532 + AluSc SINE Alu 1 291 -18 933 145 0 7 chr1 23693821 23693998 -218970355 + AluSx SINE Alu 133 308 0 504 273 55 12 chr1 23694005 23694170 -218970183 + MIR SINE MIR 72 243 -19 219 114 0 0 chr1 23694683 23694718 -218969635 + (T)n Simple_repeat Simple_repeat 1 35 0 292 357 0 0 chr1 23694850 23694962 -218969391 - MIR SINE MIR -110 152 41 1427 220 81 63 chr1 23695440 23695935 -218968418 + L1ME3 LINE L1 5653 6156 -6 2021 122 7 0 chr1 23696054 23696349 -218968004 - AluSp SINE Alu -16 297 1 728 254 14 5 chr1 23697070 23697279 -218967074 + LTR37B LTR ERV1 6 216 -252 681 258 3 97 chr1 23697306 23697604 -218966749 + LTR37B LTR ERV1 197 466 -2 204 250 75 12 chr1 23697637 23697717 -218966636 + MIR SINE MIR 62 146 -62 2299 86 6 13 chr1 23697816 23698130 -218966223 + AluSx SINE Alu 1 312 0 2110 110 0 13 chr1 23698151 23698450 -218965903 + AluSx SINE Alu 1 295 -17 417 231 12 142 chr1 23698470 23698639 -218965714 - MIR3 SINE MIR -27 181 35 276 341 65 0 chr1 23698975 23699098 -218965255 + L3 LINE CR1 1346 1476 -101 8667 176 69 51 chr1 23699187 23700908 -218963445 - MER52A LTR ERV1 0 1755 4 1883 145 0 7 chr1 23700908 23701204 -218963149 - AluJb SINE Alu -6 306 13 358 305 61 30 chr1 23701250 23701461 -218962892 - MIR SINE MIR -28 234 16 214 94 0 0 chr1 23702370 23702402 -218961951 + L2 LINE L2 3277 3308 -5 283 246 18 18 chr1 23702517 23702631 -218961722 + (TG)n Simple_repeat Simple_repeat 1 114 0 466 254 58 0 chr1 23703291 23703437 -218960916 + MIR SINE MIR 43 197 -65 377 189 40 0 chr1 23703815 23703889 -218960464 - MIR SINE MIR -113 149 73 2095 118 0 3 chr1 23704886 23705191 -218959162 - AluSq SINE Alu -9 304 1 730 251 72 14 chr1 23705240 23705447 -218958906 + MIR SINE MIR 44 262 0 220 234 104 13 chr1 23705446 23705523 -218958830 - MIR SINE MIR -62 200 117 * 2343 82 0 13 chr1 23705575 23705891 -218958462 + AluSx SINE Alu 1 312 0 185 291 36 18 chr1 23705916 23705971 -218958382 - MIR SINE MIR -195 67 12 186 43 0 0 chr1 23706398 23706421 -218957932 + (CA)n Simple_repeat Simple_repeat 1 23 0 226 273 20 20 chr1 23707045 23707144 -218957209 - MIR SINE MIR -74 134 36 333 229 95 9 chr1 23708382 23708487 -218955866 + MIR SINE MIR 76 189 -73 342 0 0 0 chr1 23708574 23708612 -218955741 + (CA)n Simple_repeat Simple_repeat 2 39 0 201 39 0 0 chr1 23709264 23709290 -218955063 + (CTG)n Simple_repeat Simple_repeat 3 28 0 753 249 73 10 chr1 23709786 23709991 -218954362 + MIR SINE MIR 42 259 -3 344 256 67 11 chr1 23710585 23710675 -218953678 - MIR SINE MIR -87 175 81 208 299 15 0 chr1 23710924 23710991 -218953362 - MIR SINE MIR -111 151 84 406 244 111 15 chr1 23711253 23711388 -218952965 + MIR3 SINE MIR 11 158 -50 281 269 43 0 chr1 23711406 23711499 -218952854 - Charlie8 DNA MER1_type -2140 277 181 383 204 0 11 chr1 23711519 23711607 -218952746 - MER69A DNA AcHobo 0 177 91 728 250 104 5 chr1 23711621 23711841 -218952512 + L1MD2 LINE L1 6084 6325 -34 266 208 10 52 chr1 23711842 23711938 -218952415 - MER69A DNA AcHobo -56 121 30 364 244 45 51 chr1 23711949 23712105 -218952248 - Charlie8 DNA MER1_type -2250 167 13 331 269 19 10 chr1 23712152 23712256 -218952097 - MIR SINE MIR -69 139 35 206 170 0 38 chr1 23712371 23712424 -218951929 + CT-rich Low_complexity Low_complexity 2 52 0 273 273 11 11 chr1 23713701 23713789 -218950564 + (TGAA)n Simple_repeat Simple_repeat 1 88 0 427 191 0 0 chr1 23713793 23713877 -218950476 - MIR SINE MIR -1 261 178 258 304 0 0 chr1 23713924 23714003 -218950350 + L2 LINE L2 3181 3259 -54 283 303 84 22 chr1 23714440 23714618 -218949735 + L2 LINE L2 2871 3059 -213 192 250 23 0 chr1 23714877 23714921 -218949432 + L2 LINE L2 3133 3177 -95 279 203 0 0 chr1 23714992 23715051 -218949302 + (CA)n Simple_repeat Simple_repeat 2 60 0 313 333 23 0 chr1 23715074 23715161 -218949192 - L1MC4 LINE L1 -1339 6703 6615 312 227 13 27 chr1 23715139 23715214 -218949139 - L1MCa LINE L1 -4358 2068 1995 * 203 233 0 33 chr1 23715214 23715274 -218949079 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 609 242 3 3 chr1 23715274 23715621 -218948732 + (CA)n Simple_repeat Simple_repeat 1 347 0 418 217 171 19 chr1 23716404 23716579 -218947774 - MIR SINE MIR -53 155 4 2158 110 0 16 chr1 23716645 23716955 -218947398 + AluSx SINE Alu 1 305 -7 325 259 167 0 chr1 23717429 23717537 -218946816 + L2 LINE L2 3181 3306 -7 384 283 20 0 chr1 23717542 23717641 -218946712 + MIR3 SINE MIR 106 206 -2 292 288 136 15 chr1 23717955 23718087 -218946266 - MIR SINE MIR -93 169 22 247 378 18 0 chr1 23718560 23718671 -218945682 + MER5A DNA MER1_type 3 115 -74 235 270 40 0 chr1 23718761 23718835 -218945518 + MIR SINE MIR 44 120 -88 288 262 60 12 chr1 23719236 23719320 -218945033 - MIR SINE MIR -141 121 34 557 264 96 0 chr1 23719741 23719919 -218944434 - MIR SINE MIR -3 259 65 185 382 0 0 chr1 23720020 23720096 -218944257 - MIR SINE MIR -2 260 185 446 300 56 14 chr1 23720168 23720381 -218943972 + MIR SINE MIR 34 253 -9 346 244 32 62 chr1 23720740 23720886 -218943467 + MIR SINE MIR 51 188 -63 399 306 27 20 chr1 23721073 23721220 -218943133 + L3 LINE CR1 1347 1494 -83 187 349 36 12 chr1 23721365 23721394 -218942959 + L3 LINE CR1 1478 1505 -72 3142 153 19 75 chr1 23721394 23721592 -218942761 + L1MB5 LINE L1 5572 5780 -394 860 146 0 0 chr1 23721592 23721722 -218942631 + FLAM_A SINE Alu 1 130 -3 3142 153 19 75 chr1 23721722 23721764 -218942589 + L1MB5 LINE L1 5780 5823 -351 4532 168 81 6 chr1 23721764 23722567 -218941786 - MER21B LTR ERV1 0 863 1 3142 153 19 75 chr1 23722567 23722964 -218941389 + L1MB5 LINE L1 5823 6174 0 187 349 36 12 chr1 23722964 23723017 -218941336 + L3 LINE CR1 1505 1562 -15 281 278 42 0 chr1 23723196 23723268 -218941085 + MIR SINE MIR 81 155 -107 737 269 57 92 chr1 23723388 23723897 -218940456 + L2 LINE L2 2823 3313 0 785 168 6 0 chr1 23723900 23724079 -218940274 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1021 130 2 12 chr1 23724095 23724594 -218939759 + (TGGA)n Simple_repeat Simple_repeat 1 493 0 273 372 54 0 chr1 23724954 23725100 -218939253 - MIR SINE MIR -63 145 42 327 255 96 0 chr1 23725165 23725259 -218939094 + MIR SINE MIR 90 192 -70 381 320 129 0 chr1 23725308 23725533 -218938820 - MIR SINE MIR -5 257 4 366 284 37 37 chr1 23725541 23725703 -218938650 + MER117 DNA MER1_type 7 168 -29 324 281 33 25 chr1 23725831 23725952 -218938401 - MIR3 SINE MIR -2 206 85 190 221 52 78 chr1 23726634 23726711 -218937642 + L2 LINE L2 3198 3272 0 290 221 115 10 chr1 23726714 23726818 -218937535 + L2 LINE L2 3158 3272 0 326 339 107 0 chr1 23726889 23727066 -218937287 - MIR SINE MIR -21 241 46 226 245 94 38 chr1 23727229 23727335 -218937018 + L2 LINE L2 2646 2757 -557 452 287 25 49 chr1 23728101 23728323 -218936030 - MIR SINE MIR -42 220 5 2007 144 0 3 chr1 23728829 23729135 -218935218 - AluJb SINE Alu -7 305 1 268 227 15 15 chr1 23729467 23729533 -218934820 - MLT1K LTR MaLR -7 581 516 263 188 10 16 chr1 23729858 23729955 -218934398 - MER5A DNA MER1_type 0 189 29 882 130 0 22 chr1 23729956 23730094 -218934259 - FLAM_C SINE Alu -8 135 1 235 294 141 0 chr1 23730143 23730235 -218934118 - MIR SINE MIR -111 151 47 347 244 157 0 chr1 23730285 23730400 -218933953 - MIR SINE MIR -21 241 109 413 322 169 6 chr1 23730625 23730802 -218933551 - MIR SINE MIR -36 226 21 238 344 33 0 chr1 23730841 23730931 -218933422 + MIR SINE MIR 12 104 -158 378 276 19 0 chr1 23730982 23731087 -218933266 - L1ME LINE L1 -440 5681 5575 656 199 143 0 chr1 23731327 23731488 -218932865 + MER5A DNA MER1_type 6 189 0 1697 195 43 0 chr1 23731496 23731819 -218932534 - MER58B DNA MER1_type 0 341 5 756 284 70 0 chr1 23732374 23732575 -218931778 + MIR SINE MIR 48 262 0 514 265 154 12 chr1 23732617 23732779 -218931574 - MER5A DNA MER1_type -1 188 4 210 37 0 0 chr1 23733116 23733143 -218931210 + (CA)n Simple_repeat Simple_repeat 2 28 0 352 311 40 27 chr1 23733304 23733452 -218930901 + MIR3 SINE MIR 10 159 -49 209 305 17 0 chr1 23734013 23734072 -218930281 - MIR SINE MIR -53 209 150 645 147 0 0 chr1 23734174 23734283 -218930070 + (TTCC)n Simple_repeat Simple_repeat 4 112 0 2039 154 0 0 chr1 23734290 23734602 -218929751 - AluSx SINE Alu 0 312 1 2024 139 0 0 chr1 23734712 23735006 -218929347 - AluJb SINE Alu -18 294 1 518 268 132 15 chr1 23735181 23735386 -218928967 + MIR SINE MIR 33 261 -1 1911 161 0 0 chr1 23735398 23735702 -218928651 + AluJo SINE Alu 1 304 -8 181 182 0 0 chr1 23735714 23735747 -218928606 + MIR SINE MIR 222 254 -8 332 180 100 10 chr1 23736301 23736401 -218927952 + MIR SINE MIR 80 188 -74 386 190 51 0 chr1 23736632 23736711 -218927642 + MIR SINE MIR 60 142 -66 375 183 28 0 chr1 23736764 23736835 -218927518 + MIR3 SINE MIR 117 189 -19 692 288 107 0 chr1 23737238 23737453 -218926900 - MIR SINE MIR -7 255 18 665 295 24 0 chr1 23737463 23737694 -218926659 - MIR SINE MIR -1 261 26 518 319 27 22 chr1 23737958 23738143 -218926210 - MIR SINE MIR -17 245 60 1271 202 32 16 chr1 23739700 23739952 -218924401 + MIR SINE MIR 3 258 -4 312 306 174 21 chr1 23740106 23740616 -218923737 + L2 LINE L2 2465 3044 -228 933 169 103 0 chr1 23741008 23741203 -218923150 + MER20 DNA MER1_type 1 215 -4 2106 114 0 7 chr1 23741323 23741622 -218922731 - AluSx SINE Alu -15 297 1 244 243 88 40 chr1 23741871 23742019 -218922334 + MIR3 SINE MIR 33 187 -21 339 220 124 0 chr1 23742689 23742784 -218921569 - MIR SINE MIR -45 163 58 251 150 50 33 chr1 23742887 23742947 -218921406 - MIR SINE MIR -63 145 85 405 294 117 6 chr1 23743020 23743200 -218921153 + MIR SINE MIR 63 262 0 369 223 0 0 chr1 23743509 23743603 -218920750 + (CA)n Simple_repeat Simple_repeat 2 95 0 323 193 11 0 chr1 23743717 23743805 -218920548 + (CA)n Simple_repeat Simple_repeat 2 90 0 680 161 0 32 chr1 23743817 23744003 -218920350 + (CA)n Simple_repeat Simple_repeat 1 180 0 618 180 8 25 chr1 23744016 23744294 -218920059 + (CA)n Simple_repeat Simple_repeat 1 273 0 713 185 6 0 chr1 23744314 23744487 -218919866 + (CA)n Simple_repeat Simple_repeat 1 174 0 189 281 0 18 chr1 23744513 23744570 -218919783 - MIR SINE MIR -67 141 86 311 352 14 0 chr1 23744836 23744978 -218919375 + CT-rich Low_complexity Low_complexity 1 144 0 393 277 15 23 chr1 23745516 23745646 -218918707 + MIR SINE MIR 18 146 -62 280 290 48 32 chr1 23745745 23745869 -218918484 - MIR3 SINE MIR -34 174 49 1985 125 3 0 chr1 23746213 23746508 -218917845 - AluSx SINE Alu -16 296 1 240 250 404 0 chr1 23746509 23746613 -218917740 - MIR SINE MIR -4 258 113 434 296 22 45 chr1 23746892 23747071 -218917282 - L2 LINE L2 -1 3312 3138 891 300 64 0 chr1 23747071 23747321 -218917032 - MLT1C LTR MaLR -2 465 200 407 227 34 25 chr1 23747345 23747464 -218916889 - MIR SINE MIR -118 144 25 1272 291 87 43 chr1 23747543 23748049 -218916304 + MLT1K LTR MaLR 15 542 -46 2264 96 0 0 chr1 23748229 23748521 -218915832 + AluSx SINE Alu 1 292 -20 294 29 0 0 chr1 23748761 23748796 -218915557 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 217 366 23 19 chr1 23749343 23749559 -218914794 - L2 LINE L2 -799 2515 2299 242 289 108 56 chr1 23749645 23749894 -218914459 + L2 LINE L2 2854 3115 -157 633 259 204 5 chr1 23749930 23750146 -218914207 + MIR SINE MIR 3 261 -1 278 203 162 0 chr1 23751136 23751210 -218913143 + Charlie1 DNA MER1_type 7 92 -2669 * 725 176 5 37 chr1 23751208 23751395 -218912958 + Charlie1 DNA MER1_type 2464 2644 -117 1213 143 11 0 chr1 23751395 23751584 -218912769 - AluSg/x SINE Alu -5 305 115 328 224 71 12 chr1 23751615 23751700 -218912653 + Charlie1 DNA MER1_type 2672 2761 0 246 260 79 94 chr1 23751713 23751840 -218912513 + L2 LINE L2 3189 3313 0 520 286 94 82 chr1 23751870 23752283 -218912070 + L2 LINE L2 2836 3253 -19 303 288 0 113 chr1 23752393 23752553 -218911800 + MIR SINE MIR 72 213 -49 412 226 0 144 chr1 23752586 23752633 -218911720 - MIR3 SINE MIR -5 203 151 2137 123 0 3 chr1 23752633 23752941 -218911412 + AluSg SINE Alu 1 307 -3 412 226 0 144 chr1 23752941 23753039 -218911314 - MIR3 SINE MIR -57 151 79 291 323 113 0 chr1 23753139 23753272 -218911081 + MIR3 SINE MIR 33 180 -28 329 285 80 58 chr1 23753273 23753585 -218910768 + L1ME4a LINE L1 5363 5681 -483 286 315 55 20 chr1 23753650 23753796 -218910557 + L1ME4a LINE L1 5783 5933 -188 394 192 41 0 chr1 23753819 23753892 -218910461 - Tigger4(Zombi) DNA MER2_type 0 2731 2656 2342 48 0 7 chr1 23753937 23754227 -218910126 + AluY SINE Alu 14 301 -10 1049 169 0 0 chr1 23754227 23754405 -218909948 + AluSg/x SINE Alu 132 309 -1 277 270 50 20 chr1 23754887 23754987 -218909366 - MIR3 SINE MIR -2 206 104 315 179 18 0 chr1 23754987 23755043 -218909310 + MER115 DNA AcHobo 1 57 -636 427 220 40 0 chr1 23755046 23755146 -218909207 - MER5C DNA MER1_type 0 324 221 2340 90 3 0 chr1 23755147 23755457 -218908896 + AluSp SINE Alu 2 312 -1 1146 173 20 28 chr1 23755463 23755711 -218908642 + L1MB2 LINE L1 5925 6170 -1 181 272 239 0 chr1 23755913 23756005 -218908348 - MER5C DNA MER1_type -208 116 3 2509 205 83 42 chr1 23756005 23756605 -218907748 + Zaphod DNA AcHobo 58 682 -3349 * 2757 188 57 3 chr1 23756586 23757219 -218907134 + Zaphod DNA AcHobo 3284 3950 -81 857 213 6 6 chr1 23757219 23757388 -218906965 - AluJb SINE Alu -9 303 135 410 204 10 0 chr1 23757389 23757487 -218906866 + (CATA)n Simple_repeat Simple_repeat 2 100 0 583 145 0 0 chr1 23757495 23757578 -218906775 - AluS SINE Alu -227 85 3 336 152 165 0 chr1 23757580 23757659 -218906694 + Zaphod DNA AcHobo 3940 4031 0 188 188 0 0 chr1 23757709 23757741 -218906612 - L3 LINE CR1 -1226 351 320 621 119 0 0 chr1 23757855 23757939 -218906414 + AluSx SINE Alu 2 85 -228 421 185 12 12 chr1 23757939 23758020 -218906333 - MER3 DNA MER1_type -128 81 1 516 189 27 14 chr1 23758031 23758179 -218906174 - Charlie5 DNA MER1_type -30 2582 2433 1327 104 0 63 chr1 23758197 23758438 -218905915 + AluSx SINE Alu 85 310 0 503 295 58 6 chr1 23758493 23758649 -218905704 + MIR SINE MIR 40 203 -59 2340 209 52 15 chr1 23758656 23759191 -218905162 - MLT1F1 LTR MaLR -12 555 1 534 247 103 0 chr1 23759291 23759437 -218904916 - MIR SINE MIR -52 210 50 2070 110 7 0 chr1 23759537 23759827 -218904526 + AluSg SINE Alu 1 292 -18 286 302 21 10 chr1 23760223 23760319 -218904034 + MIR SINE MIR 23 119 -143 1077 178 14 33 chr1 23760440 23760653 -218903700 - MER3 DNA MER1_type 0 209 1 1195 163 30 75 chr1 23760664 23760745 -218903608 - MER33 DNA MER1_type -2264 321 238 2113 120 7 0 chr1 23760745 23761054 -218903299 + AluSx SINE Alu 1 311 -1 1195 163 30 75 chr1 23761054 23761151 -218903202 - MER33 DNA MER1_type -2347 238 138 819 113 7 71 chr1 23761151 23761292 -218903061 + FLAM_C SINE Alu 2 133 0 1195 163 30 75 chr1 23761292 23761443 -218902910 - MER33 DNA MER1_type -2447 138 6 426 306 0 30 chr1 23761461 23761595 -218902758 + MIR SINE MIR 22 151 -111 1144 171 18 142 chr1 23761759 23761928 -218902425 - AluYb8 SINE Alu -11 297 109 1723 137 7 0 chr1 23761928 23762198 -218902155 - AluSq SINE Alu 0 313 42 1144 171 18 142 chr1 23762198 23762216 -218902137 - AluYb8 SINE Alu -199 109 90 2269 92 0 0 chr1 23762216 23762511 -218901842 - AluSx SINE Alu -17 295 1 1144 171 18 142 chr1 23762511 23762661 -218901692 - AluYb8 SINE Alu -218 90 1 205 309 48 12 chr1 23762707 23762791 -218901562 + L2 LINE L2 3123 3209 -63 300 303 46 9 chr1 23763052 23763161 -218901192 + MIR3 SINE MIR 68 180 -28 286 328 46 23 chr1 23763257 23763388 -218900965 + MIR SINE MIR 128 261 -1 339 130 0 0 chr1 23763407 23763461 -218900892 + (TG)n Simple_repeat Simple_repeat 2 55 0 771 252 38 9 chr1 23763606 23763816 -218900537 - MIR SINE MIR -45 217 2 5540 48 4 6 chr1 23763938 23764622 -218899731 + L1PA8 LINE L1 5483 6165 -7 512 241 8 23 chr1 23765447 23765580 -218898773 + MIR3 SINE MIR 71 201 -7 2060 126 7 0 chr1 23765580 23765874 -218898479 + AluSq SINE Alu 1 296 -17 210 268 93 31 chr1 23766091 23766188 -218898165 + MIR3 SINE MIR 13 115 -93 1983 148 0 16 chr1 23766456 23766773 -218897580 - AluJo SINE Alu 0 312 1 195 146 0 0 chr1 23767041 23767082 -218897271 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 312 297 59 8 chr1 23767631 23767749 -218896604 - MIR3 SINE MIR -75 133 10 396 247 78 13 chr1 23767785 23767938 -218896415 + MIR SINE MIR 35 197 -56 283 228 119 10 chr1 23768176 23768277 -218896076 - L2 LINE L2 -1 3271 3160 970 195 6 0 chr1 23768430 23768594 -218895759 + FRAM SINE Alu 1 165 -1 180 250 0 77 chr1 23768596 23768648 -218895705 - MIR SINE MIR -133 129 82 193 384 17 23 chr1 23768941 23769113 -218895240 - L2 LINE L2 -423 2891 2721 591 259 79 0 chr1 23769230 23769419 -218894934 - MIR SINE MIR -17 245 42 349 353 0 8 chr1 23769893 23770015 -218894338 + L1ME4a LINE L1 5795 5915 -206 300 333 52 30 chr1 23770047 23770182 -218894171 + HAL1b LINE L1 1204 1341 -7 255 222 14 42 chr1 23770258 23770330 -218894023 + L2 LINE L2 3020 3089 -183 1433 154 77 35 chr1 23770405 23770716 -218893637 + MER33 DNA MER1_type 1 324 0 353 256 12 0 chr1 23770752 23770834 -218893519 - MIR SINE MIR -82 126 44 6603 45 2 0 chr1 23770837 23771623 -218892730 + L1PA5 LINE L1 5360 6147 -7 466 232 20 21 chr1 23771971 23772116 -218892237 - MIR3 SINE MIR -23 185 37 762 329 121 9 chr1 23772338 23772767 -218891586 + L2 LINE L2 2827 3303 -10 251 204 56 0 chr1 23772861 23772915 -218891438 + MIR SINE MIR 87 143 -65 183 234 26 78 chr1 23773148 23773225 -218891128 - L2 LINE L2 -91 3181 3109 292 182 18 0 chr1 23773597 23773652 -218890701 + MIR SINE MIR 87 142 -66 408 272 140 7 chr1 23773696 23773898 -218890455 + MIR SINE MIR 18 248 -14 185 244 0 0 chr1 23774007 23774048 -218890305 + L2 LINE L2 3265 3305 -8 46 68 0 0 chr1 23775690 23775778 -218888575 + GC_rich Low_complexity Low_complexity 1 88 0 52 58 0 0 chr1 23775889 23775976 -218888377 + GC_rich Low_complexity Low_complexity 1 87 0 199 137 20 20 chr1 23776046 23776097 -218888256 + (CGGG)n Simple_repeat Simple_repeat 3 53 0 35 92 0 0 chr1 23776144 23776242 -218888111 + GC_rich Low_complexity Low_complexity 1 98 0 39 22 0 0 chr1 23776403 23776449 -218887904 + GC_rich Low_complexity Low_complexity 1 46 0 27 49 0 0 chr1 23776495 23776536 -218887817 + GC_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr1 23776709 23776742 -218887611 + GC_rich Low_complexity Low_complexity 1 33 0 244 294 140 9 chr1 23777189 23777296 -218887057 - MIR SINE MIR -71 137 45 260 255 69 20 chr1 23778303 23778405 -218885948 + MIR3 SINE MIR 68 174 -34 246 293 0 85 chr1 23778418 23778524 -218885829 + MIR SINE MIR 101 197 -65 214 347 36 31 chr1 23779496 23779689 -218884664 - L2 LINE L2 -431 2883 2690 239 286 65 26 chr1 23779750 23779827 -218884526 + L2 LINE L2 3132 3211 -61 614 303 110 0 chr1 23779838 23780092 -218884261 + L2 LINE L2 3011 3292 -21 191 302 151 47 chr1 23780790 23780896 -218883457 + MIR SINE MIR 14 130 -132 1985 125 0 23 chr1 23781338 23781642 -218882711 - AluSx SINE Alu -15 297 1 415 285 53 13 chr1 23782518 23782669 -218881684 + MIR SINE MIR 73 229 -33 478 277 36 24 chr1 23782812 23783053 -218881300 + MIR SINE MIR 21 261 -1 2323 71 3 10 chr1 23783380 23783690 -218880663 - AluSq SINE Alu -4 309 2 723 254 57 14 chr1 23783703 23783912 -218880441 - MIR SINE MIR -32 230 13 285 283 73 15 chr1 23784195 23784344 -218880009 - MIR SINE MIR -61 201 41 694 207 67 0 chr1 23784363 23784527 -218879826 + Charlie8 DNA MER1_type 73 247 -2170 426 347 7 7 chr1 23784616 23784763 -218879590 + MIR3 SINE MIR 46 192 -16 918 289 128 7 chr1 23784857 23785265 -218879088 - MLT1H1 LTR MaLR -23 532 76 187 250 0 125 chr1 23785636 23785740 -218878613 + L2 LINE L2 11 101 -3213 * 208 267 209 0 chr1 23785727 23785813 -218878540 + L2 LINE L2 3209 3312 -1 386 297 0 0 chr1 23785939 23786050 -218878303 + MIR SINE MIR 84 194 -68 424 268 21 0 chr1 23786508 23786605 -218877748 - Charlie8 DNA MER1_type -2163 254 156 1680 188 10 7 chr1 23786611 23786919 -218877434 - AluJb SINE Alu -3 309 1 180 0 0 0 chr1 23786956 23786976 -218877377 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1106 156 0 0 chr1 23786976 23787143 -218877210 - AluSg/x SINE Alu -37 273 107 867 154 0 0 chr1 23787164 23787300 -218877053 - FLAM_C SINE Alu -7 136 1 324 254 100 9 chr1 23787300 23787410 -218876943 - Charlie8 DNA MER1_type -2294 123 4 268 204 191 39 chr1 23787440 23787543 -218876810 - MIR SINE MIR -65 143 39 * 343 329 48 24 chr1 23787522 23787689 -218876664 - L3 LINE CR1 -189 1388 1218 302 301 103 19 chr1 23787703 23787859 -218876494 + MIR3 SINE MIR 2 170 -38 * 466 257 86 37 chr1 23787834 23788021 -218876332 - L2 LINE L2 -215 3057 2862 510 244 74 40 chr1 23788626 23788802 -218875551 + MIR SINE MIR 20 201 -61 457 296 24 0 chr1 23788938 23789063 -218875290 - MIR SINE MIR -101 161 34 344 208 42 10 chr1 23789102 23789198 -218875155 - L1MC4 LINE L1 -16 8026 7928 186 43 0 0 chr1 23789240 23789263 -218875090 + (TG)n Simple_repeat Simple_repeat 2 24 0 258 347 135 24 chr1 23789463 23789633 -218874720 - MIR SINE MIR -48 214 26 469 287 23 6 chr1 23790206 23790380 -218873973 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 268 271 12 0 chr1 23791000 23791085 -218873268 + (TCCA)n Simple_repeat Simple_repeat 3 88 0 270 200 11 21 chr1 23791196 23791291 -218873062 + CT-rich Low_complexity Low_complexity 1 94 0 373 274 49 61 chr1 23791326 23791412 -218872941 - MIR SINE MIR -18 244 159 2381 93 0 3 chr1 23791412 23791725 -218872628 - AluSx SINE Alu 0 312 1 373 274 49 61 chr1 23791725 23791802 -218872551 - MIR SINE MIR -103 159 83 265 300 143 0 chr1 23791895 23792035 -218872318 - L2 LINE L2 -272 3000 2841 332 264 22 0 chr1 23792571 23792662 -218871691 - MIR SINE MIR -71 137 45 209 146 55 0 chr1 23792732 23792787 -218871566 + T-rich Low_complexity Low_complexity 3 60 0 210 37 0 0 chr1 23792787 23792814 -218871539 + (A)n Simple_repeat Simple_repeat 1 27 0 885 138 0 8 chr1 23792815 23792945 -218871408 - FLAM_C SINE Alu -3 130 2 320 236 0 0 chr1 23793013 23793085 -218871268 + MIR SINE MIR 86 157 -105 331 331 84 21 chr1 23793086 23793228 -218871125 + L2 LINE L2 3148 3298 -15 189 0 0 0 chr1 23793230 23793251 -218871102 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 662 289 10 29 chr1 23793265 23793469 -218870884 - MIR SINE MIR -13 249 50 620 307 123 45 chr1 23794393 23794918 -218869435 + L2 LINE L2 2700 3272 0 186 264 7 129 chr1 23795155 23795295 -218869058 - MIR SINE MIR -91 171 49 620 237 227 8 chr1 23795445 23795996 -218868357 - L2 LINE L2 -96 3217 2548 601 278 13 0 chr1 23796379 23796530 -218867823 + MIR SINE MIR 28 180 -82 2188 104 0 7 chr1 23796561 23796870 -218867483 + AluSg SINE Alu 1 307 -3 281 297 61 74 chr1 23797075 23797223 -218867130 + MIR SINE MIR 70 215 -47 268 170 0 0 chr1 23797930 23797977 -218866376 - MIR SINE MIR -71 137 91 231 36 0 0 chr1 23798044 23798072 -218866281 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2077 108 0 0 chr1 23798074 23798352 -218866001 - AluSq SINE Alu -35 278 1 345 226 48 0 chr1 23798363 23798447 -218865906 - MIR3 SINE MIR -49 159 72 616 267 36 6 chr1 23798597 23798762 -218865591 - MIR SINE MIR -88 174 5 205 385 0 0 chr1 23799303 23799386 -218864967 - MIR SINE MIR -70 192 110 2163 106 3 3 chr1 23799423 23799725 -218864628 - AluSx SINE Alu -10 302 1 215 313 138 0 chr1 23799928 23800008 -218864345 - MIR SINE MIR -14 248 158 1674 166 0 49 chr1 23800145 23800470 -218863883 + AluJo SINE Alu 2 310 -2 541 239 63 7 chr1 23800930 23801072 -218863281 + MIR SINE MIR 9 158 -104 254 142 0 53 chr1 23802007 23802120 -218862233 + (GGGGA)n Simple_repeat Simple_repeat 5 111 0 498 250 70 53 chr1 23802136 23802364 -218861989 + MER113 DNA MER1_type? 249 480 -41 731 226 20 35 chr1 23802742 23802941 -218861412 + MIR SINE MIR 35 230 -32 208 321 25 0 chr1 23803003 23803084 -218861269 - MIR SINE MIR -6 256 174 471 292 36 7 chr1 23804568 23804705 -218859648 + MIR SINE MIR 2 142 -120 1543 185 4 8 chr1 23804729 23804994 -218859359 + AluJb SINE Alu 1 264 -48 183 233 0 0 chr1 23805117 23805160 -218859193 + L2 LINE L2 3034 3076 -196 661 320 28 10 chr1 23805277 23805518 -218858835 - MIR SINE MIR -6 256 3 1642 187 11 0 chr1 23805584 23805867 -218858486 + AluJo SINE Alu 1 286 -26 195 129 0 0 chr1 23805871 23805902 -218858451 + (TG)n Simple_repeat Simple_repeat 2 32 0 208 260 20 10 chr1 23805905 23806005 -218858348 + (TA)n Simple_repeat Simple_repeat 1 101 0 291 36 71 18 chr1 23806101 23806157 -218858196 + T-rich Low_complexity Low_complexity 4 62 0 1610 158 62 0 chr1 23806163 23806436 -218857917 - AluJb SINE Alu -9 303 14 279 273 115 21 chr1 23806487 23806655 -218857698 - MIR SINE MIR 0 262 71 281 277 50 50 chr1 23806942 23807043 -218857310 - MIR SINE MIR -115 147 47 256 271 0 24 chr1 23807427 23807512 -218856841 + MIR3 SINE MIR 74 156 -52 276 298 73 51 chr1 23807515 23807693 -218856660 + MER113 DNA MER1_type? 1 182 -339 838 209 50 10 chr1 23807720 23807921 -218856432 + MIR SINE MIR 15 223 -39 914 228 79 0 chr1 23807967 23808195 -218856158 + MER113 DNA MER1_type? 218 463 -58 620 267 33 12 chr1 23808486 23808708 -218855645 + MIR SINE MIR 37 262 0 219 333 74 0 chr1 23808824 23808905 -218855448 + L2 LINE L2 3202 3288 -25 279 79 0 0 chr1 23808907 23808945 -218855408 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 2084 121 3 0 chr1 23809345 23809642 -218854711 + AluSx SINE Alu 1 298 -14 635 280 48 31 chr1 23810033 23810260 -218854093 - MIR SINE MIR -29 233 4 231 167 0 37 chr1 23810346 23810400 -218853953 - L2 LINE L2 0 3313 3262 29 0 0 0 chr1 23810650 23810679 -218853674 + AT_rich Low_complexity Low_complexity 1 29 0 936 182 0 6 chr1 23810688 23810847 -218853506 - AluJo/FRAM SINE Alu -21 291 134 2182 123 0 0 chr1 23810847 23811155 -218853198 - AluSx SINE Alu -4 308 1 453 250 13 0 chr1 23811949 23812069 -218852284 - MER20B DNA MER1_type -21 198 74 197 307 14 14 chr1 23812273 23812413 -218851940 + L2 LINE L2 2872 3011 -261 287 297 0 27 chr1 23812432 23812543 -218851810 + MIR SINE MIR 58 165 -97 264 229 157 0 chr1 23813141 23813211 -218851142 + L2 LINE L2 3232 3312 -1 354 362 66 0 chr1 23813465 23813617 -218850736 - MIR SINE MIR -97 165 4 242 269 84 8 chr1 23813649 23813768 -218850585 - MIR SINE MIR -116 146 19 1280 163 28 67 chr1 23814121 23814404 -218849949 - AluJo SINE Alu -2 310 39 1805 168 0 7 chr1 23814533 23814831 -218849522 - AluJo SINE Alu -16 296 1 197 265 108 36 chr1 23814831 23814914 -218849439 - MIR SINE MIR -5 257 169 486 220 0 108 chr1 23814981 23815103 -218849250 + MIR SINE MIR 73 170 -92 1993 139 0 7 chr1 23815103 23815412 -218848941 - AluSx SINE Alu -5 307 1 486 220 0 108 chr1 23815412 23815475 -218848878 + MIR SINE MIR 170 238 -24 2194 220 59 42 chr1 23815820 23815907 -218848446 + L1ME3 LINE L1 5562 5646 -516 2426 119 37 99 chr1 23815907 23816172 -218848181 - Tigger2a DNA MER2_type -2274 434 209 1319 166 11 120 chr1 23816172 23816522 -218847831 + AluJo SINE Alu 1 312 0 2426 119 37 99 chr1 23816522 23816719 -218847634 - Tigger2a DNA MER2_type -2499 209 1 2194 220 59 42 chr1 23816719 23817222 -218847131 + L1ME3 LINE L1 5646 6162 0 321 267 193 7 chr1 23817240 23817390 -218846963 + MIR SINE MIR 70 247 -15 582 310 70 41 chr1 23817708 23818251 -218846102 - L2 LINE L2 -23 3249 2691 409 209 12 0 chr1 23818650 23818736 -218845617 - MIR3 SINE MIR -41 167 81 253 289 10 29 chr1 23818916 23819020 -218845333 - MIR SINE MIR 0 262 161 473 221 0 0 chr1 23819480 23819575 -218844778 + MIR SINE MIR 60 154 -108 895 248 60 16 chr1 23819627 23819877 -218844476 + MIR SINE MIR 2 262 0 2364 86 0 0 chr1 23820017 23820319 -218844034 - AluSg SINE Alu -8 302 1 43 0 0 0 chr1 23820394 23820437 -218843916 + AT_rich Low_complexity Low_complexity 1 43 0 2689 23 0 0 chr1 23820576 23820883 -218843470 - AluY SINE Alu -4 307 1 277 313 31 69 chr1 23821280 23821440 -218842913 + MIR3 SINE MIR 44 197 -11 186 349 0 0 chr1 23821469 23821535 -218842818 + L2 LINE L2 3203 3268 -4 939 94 35 0 chr1 23821535 23821706 -218842647 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 222 235 74 0 chr1 23821764 23821845 -218842508 + L2 LINE L2 2919 3005 -308 302 303 12 0 chr1 23821845 23821957 -218842396 + MIR SINE MIR 39 152 -62 224 189 0 0 chr1 23822743 23822789 -218841564 - MIR SINE MIR -56 152 106 346 271 133 13 chr1 23823537 23823688 -218840665 - MIR SINE MIR -74 188 20 309 231 0 15 chr1 23823709 23823774 -218840579 + MER5A DNA MER1_type 21 84 -105 234 258 18 126 chr1 23823711 23823878 -218840475 - MER5B DNA MER1_type -13 165 17 * 469 181 23 99 chr1 23823938 23824109 -218840244 + L1ME4a LINE L1 5964 6121 0 320 229 67 38 chr1 23824200 23824305 -218840048 + MIR SINE MIR 90 197 -65 225 245 0 0 chr1 23824491 23824540 -218839813 - MIR SINE MIR -63 145 97 287 257 71 0 chr1 23825075 23825188 -218839165 + MIR SINE MIR 33 153 -55 276 346 60 16 chr1 23825243 23825428 -218838925 + MIR SINE MIR 69 261 -1 526 212 18 0 chr1 23825844 23825957 -218838396 + MIR SINE MIR 69 183 -79 2213 214 47 20 chr1 23826331 23826821 -218837532 - MLT1D LTR MaLR -2 503 1 411 288 135 6 chr1 23826946 23827109 -218837244 - MIR SINE MIR -9 253 70 1992 100 50 0 chr1 23827130 23827411 -218836942 + AluSx SINE Alu 2 296 -16 2155 112 0 0 chr1 23827930 23828233 -218836120 + AluSx SINE Alu 1 303 -9 454 245 158 33 chr1 23828852 23829036 -218835317 + MIR SINE MIR 56 262 0 273 148 19 19 chr1 23829215 23829269 -218835084 - MIR SINE MIR -92 170 117 473 274 37 46 chr1 23830055 23830287 -218834066 + MIR SINE MIR 27 258 -4 424 272 8 16 chr1 23830834 23830959 -218833394 + MIR SINE MIR 20 143 -119 1574 166 13 23 chr1 23831073 23831380 -218832973 + AluJo SINE Alu 1 304 -8 326 272 37 120 chr1 23831426 23831643 -218832710 + L2 LINE L2 2886 3084 -188 227 306 34 102 chr1 23831996 23832067 -218832286 + L2 LINE L2 3174 3231 -82 1945 137 0 17 chr1 23832067 23832366 -218831987 - AluSx SINE Alu -11 301 8 227 306 34 102 chr1 23832366 23832441 -218831912 + L2 LINE L2 3231 3310 -3 283 319 11 11 chr1 23832441 23832532 -218831821 + (TGGA)n Simple_repeat Simple_repeat 2 92 0 186 246 0 0 chr1 23832753 23832814 -218831539 + (TGGG)n Simple_repeat Simple_repeat 4 64 0 353 331 12 25 chr1 23832816 23832976 -218831377 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 409 265 10 0 chr1 23833318 23833420 -218830933 + MIR SINE MIR 41 143 -119 219 139 0 0 chr1 23833539 23833575 -218830778 + (TGGG)n Simple_repeat Simple_repeat 4 39 0 223 291 51 0 chr1 23833575 23833654 -218830699 + MIR SINE MIR 138 220 -42 386 322 48 44 chr1 23833811 23834084 -218830269 - L2 LINE L2 -56 3216 2943 280 315 147 0 chr1 23834209 23834393 -218829960 + MIR SINE MIR 37 247 -15 211 306 45 36 chr1 23834545 23834656 -218829697 + MIR SINE MIR 86 197 -65 455 282 38 8 chr1 23835339 23835470 -218828883 + MIR SINE MIR 37 171 -91 321 284 129 0 chr1 23835551 23835667 -218828686 + MIR SINE MIR 2 132 -130 430 171 18 90 chr1 23835797 23835908 -218828445 - MIR SINE MIR -70 192 90 181 278 83 68 chr1 23836313 23836446 -218827907 + L2 LINE L2 2713 2847 -467 535 320 128 5 chr1 23836487 23836690 -218827663 + MIR SINE MIR 2 229 -33 477 320 55 62 chr1 23836781 23837056 -218827297 + L2 LINE L2 2998 3270 -2 227 230 52 126 chr1 23837063 23837198 -218827155 - L2 LINE L2 -199 3073 2949 270 261 29 0 chr1 23837451 23837520 -218826833 - L2 LINE L2 -33 3239 3169 408 264 29 0 chr1 23837590 23837703 -218826650 - MIR SINE MIR -63 145 30 551 292 116 5 chr1 23837842 23838058 -218826295 + MIR SINE MIR 20 259 -3 267 282 94 28 chr1 23838793 23839006 -218825347 + L2 LINE L2 2830 3056 -216 467 266 22 35 chr1 23839270 23839496 -218824857 - MER113 DNA MER1_type? -297 224 2 354 361 79 41 chr1 23839552 23839893 -218824460 - L2 LINE L2 -38 3234 2881 390 272 39 0 chr1 23839939 23840042 -218824311 + MIR SINE MIR 78 184 -78 203 222 0 37 chr1 23840608 23840662 -218823691 - MIR SINE MIR -111 151 100 1674 121 0 16 chr1 23840673 23840944 -218823409 - AluSx SINE Alu 0 312 49 259 300 0 22 chr1 23841003 23841093 -218823260 - MIR3 SINE MIR -117 91 4 262 272 37 25 chr1 23841480 23841561 -218822792 + MIR SINE MIR 72 153 -55 423 293 86 0 chr1 23842298 23842438 -218821915 + MIR3 SINE MIR 8 159 -49 387 342 75 35 chr1 23842589 23842788 -218821565 + L2 LINE L2 3063 3269 -3 2449 59 0 0 chr1 23843705 23844011 -218820342 + AluY SINE Alu 1 306 -5 344 310 62 16 chr1 23844323 23844452 -218819901 - MIR SINE MIR -8 254 120 * 556 301 57 21 chr1 23844451 23844669 -218819684 - MIR SINE MIR -6 256 21 713 285 77 9 chr1 23844762 23844983 -218819370 + MIR SINE MIR 26 261 -1 492 231 45 8 chr1 23845660 23845794 -218818559 - MIR3 SINE MIR -47 161 23 236 243 40 40 chr1 23845838 23845912 -218818441 + MIR SINE MIR 81 154 -108 184 250 40 40 chr1 23846219 23846295 -218818058 - L2 LINE L2 -292 2980 2905 237 333 50 10 chr1 23846539 23846638 -218817715 + L2 LINE L2 3091 3193 -79 192 292 0 0 chr1 23846939 23846987 -218817366 + L2 LINE L2 3139 3186 -86 726 277 67 32 chr1 23848177 23848462 -218815891 - MLT1I LTR MaLR -65 344 50 452 224 327 6 chr1 23848484 23848649 -218815704 - MIR SINE MIR -44 218 1 279 195 126 11 chr1 23848653 23848740 -218815613 - MER113 DNA MER1_type? -422 99 3 332 302 48 8 chr1 23848756 23848952 -218815401 + MIR SINE MIR 4 257 -5 533 360 135 20 chr1 23849679 23850079 -218814274 - L2 LINE L2 -1 3271 2826 1334 190 209 38 chr1 23850094 23850136 -218814217 - MLT1F1 LTR MaLR 0 567 534 1785 140 49 25 chr1 23850136 23850422 -218813931 + AluJo SINE Alu 4 296 -16 1334 190 209 38 chr1 23850422 23850867 -218813486 - MLT1F1 LTR MaLR -33 534 1 340 239 31 85 chr1 23851251 23851381 -218812972 - MER5A DNA MER1_type -1 188 66 2113 135 3 0 chr1 23851414 23851718 -218812635 - AluSx SINE Alu -7 305 1 502 265 176 56 chr1 23852248 23852572 -218811781 - L2 LINE L2 0 3313 2951 478 302 12 6 chr1 23852733 23852905 -218811448 - L2 LINE L2 -211 3061 2889 535 282 92 11 chr1 23853628 23853802 -218810551 + MIR SINE MIR 29 216 -46 1287 273 25 48 chr1 23853890 23854136 -218810217 - L1ME4a LINE L1 -3 6118 5868 841 144 0 58 chr1 23854136 23854275 -218810078 - FLAM_C SINE Alu 0 133 3 1287 273 25 48 chr1 23854275 23854679 -218809674 - L1ME4a LINE L1 -253 5868 5483 371 106 15 0 chr1 23855220 23855286 -218809067 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 221 272 75 150 chr1 23855365 23855711 -218808642 - L2 LINE L2 -12 3260 2941 313 323 169 27 chr1 23855877 23856137 -218808216 - L2 LINE L2 0 3272 2976 571 274 109 0 chr1 23856376 23856551 -218807802 - MIR SINE MIR -29 233 40 212 305 9 48 chr1 23856858 23856963 -218807390 - L2 LINE L2 -172 3100 3000 182 274 262 0 chr1 23857149 23857233 -218807120 - MIR3 SINE MIR -46 162 57 351 294 160 21 chr1 23857236 23857423 -218806930 - MIR SINE MIR -29 233 21 284 257 119 10 chr1 23857802 23857903 -218806450 - MIR SINE MIR -62 146 35 234 316 84 65 chr1 23857939 23858094 -218806259 - MIR3 SINE MIR -19 189 32 234 0 0 0 chr1 23858127 23858153 -218806200 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 390 252 48 40 chr1 23858296 23858487 -218805866 - MIR3 SINE MIR -65 143 2 668 297 14 24 chr1 23858710 23858922 -218805431 - L2 LINE L2 -11 3302 3093 216 260 210 10 chr1 23859263 23859363 -218804990 - MIR SINE MIR -123 139 20 501 298 110 11 chr1 23859424 23859615 -218804738 - MIR SINE MIR -13 249 40 487 263 59 12 chr1 23859662 23859825 -218804528 - MIR SINE MIR -32 176 38 1071 222 154 41 chr1 23859855 23860297 -218804056 + L2 LINE L2 1820 2311 -1003 941 281 65 17 chr1 23860345 23860835 -218803518 + L2 LINE L2 2729 3302 -11 248 335 23 21 chr1 23861334 23861460 -218802893 + MIR SINE MIR 59 145 -63 204 316 86 22 chr1 23861725 23861864 -218802489 + MIR SINE MIR 6 153 -109 648 330 14 5 chr1 23862012 23862227 -218802126 + MIR SINE MIR 36 252 -10 439 241 65 0 chr1 23862275 23862383 -218801970 - MIR SINE MIR -109 153 39 231 88 0 0 chr1 23863347 23863381 -218800972 + (TG)n Simple_repeat Simple_repeat 1 34 0 284 310 78 0 chr1 23863748 23863864 -218800489 + MIR SINE MIR 24 148 -114 446 307 55 20 chr1 23864034 23864236 -218800117 - MIR SINE MIR -25 237 29 331 296 0 0 chr1 23865240 23865328 -218799025 - MIR SINE MIR -58 150 63 192 250 153 14 chr1 23865533 23865605 -218798748 - L2 LINE L2 -37 3235 3154 260 346 45 0 chr1 23865666 23865799 -218798554 - L2 LINE L2 -146 3126 2988 392 245 79 72 chr1 23865970 23866023 -218798330 + L1MC4 LINE L1 6564 6615 -1427 2006 137 3 0 chr1 23866023 23866316 -218798037 + AluJb SINE Alu 1 294 -18 392 245 79 72 chr1 23866316 23866401 -218797952 + L1MC4 LINE L1 6615 6703 -1339 376 333 0 0 chr1 23866335 23866425 -218797928 - L1MC4 LINE L1 -1339 6703 6614 * 1072 172 0 6 chr1 23866425 23866599 -218797754 + AluJo SINE Alu 125 297 -15 222 371 50 3 chr1 23866692 23866820 -218797533 - MIR SINE MIR -59 149 47 208 387 9 0 chr1 23866858 23866964 -218797389 + L2 LINE L2 3166 3272 0 186 43 0 0 chr1 23866970 23866993 -218797360 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 375 314 5 43 chr1 23867409 23867594 -218796759 + CT-rich Low_complexity Low_complexity 3 180 0 203 152 0 0 chr1 23868401 23868434 -218795919 + GA-rich Low_complexity Low_complexity 3 35 0 360 226 235 0 chr1 23868660 23868775 -218795578 - MIR3 SINE MIR -47 161 20 664 201 59 3 chr1 23868851 23869012 -218795341 - MIR SINE MIR -11 197 22 276 306 108 9 chr1 23869023 23869134 -218795219 + L2 LINE L2 3192 3313 0 375 121 0 0 chr1 23869134 23869192 -218795161 + (CGGA)n Simple_repeat Simple_repeat 2 59 0 317 333 203 11 chr1 23869950 23870127 -218794226 - MIR SINE MIR -14 248 38 187 326 100 65 chr1 23870257 23870487 -218793866 - L2 LINE L2 -84 3188 2951 2150 123 7 0 chr1 23870515 23870825 -218793528 + AluSx SINE Alu 1 312 0 306 267 20 30 chr1 23870950 23871051 -218793302 + L2 LINE L2 3172 3271 -1 990 205 43 35 chr1 23871299 23871553 -218792800 - MIR SINE MIR -2 260 5 574 214 107 19 chr1 23872206 23872365 -218791988 - MIR SINE MIR -70 192 20 312 331 8 8 chr1 23872605 23872726 -218791627 - L2 LINE L2 -215 3057 2937 360 252 118 0 chr1 23873120 23873239 -218791114 + MIR3 SINE MIR 73 205 -3 519 232 29 14 chr1 23873657 23873795 -218790558 + MIR3 SINE MIR 23 162 -46 326 250 53 97 chr1 23874365 23874420 -218789933 + MIR3 SINE MIR 11 67 -195 1733 185 3 0 chr1 23874420 23874718 -218789635 + AluJo SINE Alu 1 299 -13 326 250 53 97 chr1 23874718 23874860 -218789493 + MIR3 SINE MIR 67 204 -58 311 170 0 0 chr1 23875318 23875371 -218788982 + MIR SINE MIR 103 155 -107 467 297 114 6 chr1 23875778 23875953 -218788400 - MIR SINE MIR -34 228 35 293 295 48 9 chr1 23876331 23876436 -218787917 + MIR3 SINE MIR 77 185 -23 2161 103 17 0 chr1 23876555 23876857 -218787496 + AluSq SINE Alu 1 307 -6 411 304 76 0 chr1 23877153 23877324 -218787029 - MIR SINE MIR -6 256 73 397 229 74 41 chr1 23878007 23878129 -218786224 - MIR SINE MIR -63 145 20 425 299 32 32 chr1 23878603 23878757 -218785596 + MIR3 SINE MIR 17 170 -38 263 310 0 23 chr1 23879456 23879543 -218784810 - MIR SINE MIR -85 123 39 627 237 28 47 chr1 23879939 23880150 -218784203 - MIR SINE MIR -55 207 1 203 284 40 0 chr1 23880696 23880770 -218783583 + MIR SINE MIR 51 127 -81 529 320 113 49 chr1 23880915 23881576 -218782777 + L2 LINE L2 2455 3155 -117 346 293 35 9 chr1 23931764 23931880 -218732473 + MIR3 SINE MIR 42 160 -48 476 212 40 0 chr1 23932041 23932140 -218732213 + MER5A DNA MER1_type 7 109 -80 554 249 85 42 chr1 23932205 23932370 -218731983 + MER5B DNA MER1_type 1 172 -6 1181 204 58 23 chr1 23932519 23932650 -218731703 - MER4E LTR ERV1 0 766 641 2050 145 7 3 chr1 23932650 23932954 -218731399 - AluSx SINE Alu -5 307 3 1181 204 58 23 chr1 23932954 23933170 -218731183 - MER4E LTR ERV1 -125 641 407 1001 245 68 13 chr1 23933483 23933919 -218730434 - L2 LINE L2 -139 3174 2708 941 171 0 0 chr1 23933921 23934061 -218730292 - FRAM SINE Alu -22 154 15 908 221 45 21 chr1 23934094 23934384 -218729969 - AluJo SINE Alu -1 301 5 2251 122 0 0 chr1 23934600 23934894 -218729459 + AluSq SINE Alu 1 294 -19 218 296 230 0 chr1 23934935 23935087 -218729266 - MIR SINE MIR -56 206 20 2267 123 0 0 chr1 23935538 23935839 -218728514 + AluSx SINE Alu 1 301 -11 351 119 36 71 chr1 23936361 23936445 -218727908 - MLT1F LTR MaLR -13 529 449 344 286 8 25 chr1 23936607 23936726 -218727627 - MLT1H LTR MaLR -385 164 48 203 316 44 35 chr1 23936825 23936939 -218727414 - MER5A DNA MER1_type -21 168 54 * 272 316 43 17 chr1 23936859 23936976 -218727377 + MER5A DNA MER1_type 64 183 -6 385 292 23 15 chr1 23937136 23937266 -218727087 - MIR SINE MIR -112 150 20 239 271 0 0 chr1 23937447 23937506 -218726847 - L2 LINE L2 -218 3054 2996 344 312 133 43 chr1 23937590 23937936 -218726417 + L2 LINE L2 2887 3263 -9 224 290 120 20 chr1 23938288 23938388 -218725965 - MIR SINE MIR -123 139 30 303 275 61 30 chr1 23938433 23938564 -218725789 - L2 LINE L2 -207 3106 2972 371 335 84 46 chr1 23938711 23938950 -218725403 + MIR SINE MIR 12 259 -3 645 249 90 21 chr1 23938972 23939161 -218725192 - MIR SINE MIR -3 259 58 309 327 106 30 chr1 23939359 23939558 -218724795 + MIR SINE MIR 20 233 -29 2072 268 72 12 chr1 23939582 23939684 -218724669 - MLT1E2 LTR MaLR -4 622 528 2284 94 0 0 chr1 23939684 23939981 -218724372 + AluSg SINE Alu 1 297 -13 2072 268 72 12 chr1 23939981 23940465 -218723888 - MLT1E2 LTR MaLR -98 528 1 389 278 40 24 chr1 23940478 23940604 -218723749 - MIR3 SINE MIR -4 204 77 487 275 107 81 chr1 23941142 23941524 -218722829 - MLT1H LTR MaLR -127 422 31 804 261 177 32 chr1 23941534 23941913 -218722440 - MLT1J LTR MaLR -48 463 30 350 275 44 0 chr1 23941932 23942023 -218722330 - MIR SINE MIR -63 145 51 223 272 250 7 chr1 23942130 23942266 -218722087 - MIR SINE MIR -9 253 85 259 345 134 7 chr1 23942479 23942621 -218721732 + MIR SINE MIR 23 182 -80 501 270 31 37 chr1 23942843 23943006 -218721347 + MER103 DNA DNA 3 164 -2 295 105 35 0 chr1 23943548 23943605 -218720748 + CT-rich Low_complexity Low_complexity 4 62 0 634 243 286 4 chr1 23943612 23944067 -218720286 - L2 LINE L2 -1 3312 2722 230 346 31 0 chr1 23944287 23944417 -218719936 - MIR3 SINE MIR -11 197 64 778 222 33 0 chr1 23945118 23945303 -218719050 + MIR SINE MIR 20 208 -54 378 258 21 0 chr1 23945652 23945745 -218718608 + MIR SINE MIR 31 125 -83 978 191 0 50 chr1 23945746 23945945 -218718408 + MER5A DNA MER1_type 1 189 0 217 289 39 39 chr1 23946366 23946470 -218717883 + L2 LINE L2 3136 3239 -33 451 333 65 19 chr1 23946515 23946731 -218717622 - MIR SINE MIR -33 229 4 481 282 60 8 chr1 23947500 23947695 -218716658 + MIR SINE MIR 18 228 -34 251 292 136 0 chr1 23948033 23948170 -218716183 - MIR3 SINE MIR -12 196 39 298 301 109 6 chr1 23948586 23948753 -218715600 + MIR SINE MIR 45 233 -29 305 333 0 0 chr1 23948846 23948936 -218715417 + MIR3 SINE MIR 69 158 -50 1824 132 45 7 chr1 23948942 23949070 -218715283 + AluJb SINE Alu 4 126 -186 2058 122 11 0 chr1 23949070 23949357 -218714996 + AluSx SINE Alu 3 292 -20 1824 132 45 7 chr1 23949357 23949516 -218714837 + AluJb SINE Alu 126 302 -10 2000 122 7 0 chr1 23949556 23949842 -218714511 - AluSq SINE Alu -25 288 1 241 79 0 0 chr1 23949981 23950019 -218714334 - L1MB5 LINE L1 -8 6166 6129 474 267 17 0 chr1 23950546 23950666 -218713687 + MIR SINE MIR 20 141 -121 530 304 22 7 chr1 23950985 23951195 -218713158 + MIR SINE MIR 17 235 -27 450 358 61 0 chr1 23951709 23951857 -218712496 + L2 LINE L2 3116 3272 0 1151 59 0 0 chr1 23952173 23952309 -218712044 + AluSq/x SINE Alu 1 136 -177 2024 106 67 0 chr1 23952310 23952594 -218711759 + AluSg SINE Alu 3 305 -5 730 284 95 32 chr1 23952641 23952979 -218711374 + L2 LINE L2 2949 3307 -6 452 259 155 6 chr1 23953441 23953634 -218710719 - MIR SINE MIR -11 251 33 685 320 84 34 chr1 23953867 23954556 -218709797 - L2 LINE L2 -3 3269 2557 2392 85 3 0 chr1 23954568 23954875 -218709478 - AluSp SINE Alu -5 308 1 208 250 0 0 chr1 23955893 23955937 -218708416 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2011 93 22 47 chr1 23955969 23956290 -218708063 - AluSq SINE Alu 0 313 1 551 285 20 71 chr1 23956325 23956588 -218707765 - MIR SINE MIR -6 256 8 452 321 109 0 chr1 23956629 23956813 -218707540 - MIR SINE MIR -6 256 53 2018 139 0 0 chr1 23956822 23957109 -218707244 + AluJb SINE Alu 1 287 -25 592 327 132 27 chr1 23957421 23957743 -218706610 - L2 LINE L2 -1 3271 2870 749 195 54 32 chr1 23957743 23957928 -218706425 - MER53 DNA DNA 0 189 1 592 327 132 27 chr1 23957928 23958090 -218706263 - L2 LINE L2 -402 2870 2726 185 203 162 14 chr1 23958225 23958299 -218706054 - L2 LINE L2 -172 3100 3016 215 368 74 12 chr1 23958393 23958556 -218705797 + L2 LINE L2 2885 3057 -215 2778 104 3 0 chr1 23958569 23958943 -218705410 + THE1C LTR MaLR 1 375 0 887 212 56 0 chr1 23958998 23959196 -218705157 - MIR SINE MIR -49 213 5 180 243 100 0 chr1 23959404 23959474 -218704879 + L2 LINE L2 3150 3226 -46 1721 201 0 6 chr1 23959732 23960046 -218704307 - AluJb SINE Alu 0 312 1 185 318 0 32 chr1 23960191 23960254 -218704099 - L2 LINE L2 -63 3209 3149 269 284 0 71 chr1 23960573 23960714 -218703639 - MLT1H LTR MaLR -390 159 29 268 221 132 15 chr1 23961054 23961122 -218703231 - MER91 DNA MER1_type -1 189 120 225 284 37 0 chr1 23961226 23961307 -218703046 + MIR SINE MIR 64 147 -61 444 293 0 0 chr1 23961369 23961485 -218702868 + MER117 DNA MER1_type 68 183 -14 414 319 89 24 chr1 23961546 23961759 -218702594 + MIR SINE MIR 8 234 -28 218 331 111 47 chr1 23962133 23962265 -218702088 - L2 LINE L2 -1 3312 3165 2099 123 7 0 chr1 23962265 23962574 -218701779 + AluSq SINE Alu 1 311 -2 218 331 111 47 chr1 23962574 23962613 -218701740 - L2 LINE L2 -148 3165 3130 470 250 185 20 chr1 23962675 23962875 -218701478 + MIR SINE MIR 30 262 0 * 756 166 94 155 chr1 23962859 23963124 -218701229 - MIR SINE MIR 0 262 14 250 320 53 53 chr1 23963114 23963264 -218701089 - MIR SINE MIR -46 216 67 * 820 317 95 9 chr1 23964465 23964897 -218699456 + L2 LINE L2 2804 3272 0 1658 268 85 12 chr1 23965380 23965455 -218698898 - L2 LINE L2 -14 3299 3231 2067 113 3 0 chr1 23965455 23965767 -218698586 + AluSx SINE Alu 1 313 0 1878 139 0 57 chr1 23965767 23966098 -218698255 + AluJb SINE Alu 1 312 0 1658 268 85 12 chr1 23966098 23966813 -218697540 - L2 LINE L2 -81 3232 2451 2049 92 67 0 chr1 23966879 23967161 -218697192 + AluSp SINE Alu 1 301 -12 2166 111 3 0 chr1 23967169 23967466 -218696887 + AluSp SINE Alu 1 298 -15 2032 146 0 3 chr1 23967660 23967961 -218696392 + AluJb SINE Alu 1 300 -12 2348 89 10 0 chr1 23967961 23968264 -218696089 + AluSx SINE Alu 1 306 -6 427 269 293 0 chr1 23968332 23968499 -218695854 - MIR SINE MIR -16 246 31 213 241 19 0 chr1 23968798 23968852 -218695501 - MIR SINE MIR -71 137 83 615 285 39 34 chr1 23968919 23969126 -218695227 + MIR SINE MIR 34 241 -21 708 261 14 33 chr1 23969133 23969348 -218695005 - MIR SINE MIR -3 259 49 808 246 23 66 chr1 23969662 23969754 -218694599 + MIR SINE MIR 8 102 -160 345 24 0 0 chr1 23969754 23969796 -218694557 + (TG)n Simple_repeat Simple_repeat 2 43 0 1673 184 4 0 chr1 23969797 23970075 -218694278 - AluJb SINE Alu -33 279 1 808 246 23 66 chr1 23970075 23970128 -218694225 + MIR SINE MIR 102 156 -106 419 179 0 13 chr1 23970128 23970206 -218694147 - MER116 DNA Mariner -3 77 1 808 246 23 66 chr1 23970206 23970313 -218694040 + MIR SINE MIR 156 252 -10 334 216 137 69 chr1 23970544 23970646 -218693707 - L2 LINE L2 -2 3311 3203 331 339 170 6 chr1 23970788 23970959 -218693394 - L2 LINE L2 -173 3099 2901 862 272 51 24 chr1 23971434 23971688 -218692665 + MIR SINE MIR 2 262 0 1980 142 0 16 chr1 23971955 23972271 -218692082 + AluSx SINE Alu 1 311 -1 733 178 104 0 chr1 23972548 23972711 -218691642 - MER58A DNA MER1_type 0 224 45 214 229 0 0 chr1 23972773 23972821 -218691532 - MIR SINE MIR -136 126 79 25 31 0 0 chr1 23973180 23973212 -218691141 + AT_rich Low_complexity Low_complexity 1 32 0 543 279 67 6 chr1 23974192 23974357 -218689996 - MIR3 SINE MIR -15 193 19 186 269 39 0 chr1 23974965 23975017 -218689336 - MIR3 SINE MIR -4 204 151 721 238 12 0 chr1 23975031 23975199 -218689154 - MER117 DNA MER1_type -27 170 1 392 346 38 0 chr1 23975200 23975333 -218689020 - MIR3 SINE MIR -49 159 22 250 186 0 0 chr1 23975491 23975534 -218688819 - L2 LINE L2 -7 3306 3264 * 695 273 78 26 chr1 23975500 23975731 -218688622 - MIR SINE MIR -10 252 10 485 328 148 0 chr1 23976177 23976427 -218687926 - L2 LINE L2 0 3272 2986 371 288 146 26 chr1 23976704 23976930 -218687423 - L2 LINE L2 -193 3079 2827 189 215 25 63 chr1 23977563 23977642 -218686711 - L2 LINE L2 -265 3007 2932 1992 113 0 7 chr1 23978805 23979088 -218685265 + AluSq SINE Alu 1 281 -32 354 23 0 0 chr1 23979088 23979131 -218685222 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 250 350 0 0 chr1 23979245 23979385 -218684968 + (CA)n Simple_repeat Simple_repeat 1 140 0 296 264 11 0 chr1 23979934 23980025 -218684328 - LTR33 LTR ERVL -429 92 1 393 280 23 23 chr1 23980672 23980804 -218683549 + MIR SINE MIR 16 147 -115 2069 115 3 3 chr1 23980862 23981157 -218683196 + AluSg SINE Alu 1 295 -15 281 225 146 22 chr1 23985452 23985541 -218678812 + MIR3 SINE MIR 63 162 -46 390 306 24 28 chr1 23985565 23985734 -218678619 - MIR3 SINE MIR -59 149 10 201 256 0 0 chr1 23986822 23986865 -218677488 - MIR SINE MIR -109 153 111 505 226 13 44 chr1 23986929 23987088 -218677265 + MER5A DNA MER1_type 7 160 -29 663 275 153 13 chr1 23988736 23988965 -218675388 - MIR SINE MIR 0 262 2 256 247 27 0 chr1 23989555 23989628 -218674725 + (CTGGGG)n Simple_repeat Simple_repeat 1 75 0 462 300 63 11 chr1 23989682 23989872 -218674481 + MIR SINE MIR 18 217 -45 254 295 18 80 chr1 23989912 23989980 -218674373 + L2 LINE L2 3205 3265 -48 2947 122 7 2 chr1 23989980 23990406 -218673947 - MSTA LTR MaLR 0 428 1 254 295 18 80 chr1 23990406 23990449 -218673904 + L2 LINE L2 3265 3309 -4 526 208 0 8 chr1 23990469 23990589 -218673764 + MER103 DNA DNA 2 120 -46 636 116 0 26 chr1 23990763 23990864 -218673489 + MSTA LTR MaLR 239 354 -74 222 37 0 0 chr1 23990879 23990906 -218673447 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 411 311 93 59 chr1 23991042 23991331 -218673022 - L2 LINE L2 -41 3231 2933 1175 157 64 149 chr1 23991375 23991784 -218672569 + MLT1A2 LTR MaLR 1 374 0 2504 83 3 0 chr1 23992713 23993025 -218671328 + AluSq SINE Alu 1 313 0 205 319 28 0 chr1 23993398 23993470 -218670883 - MIR SINE MIR -10 252 179 199 164 0 36 chr1 23993477 23993532 -218670821 - MER5C DNA MER1_type -2 322 270 935 179 6 6 chr1 23993536 23993698 -218670655 - FRAM SINE Alu -4 162 1 272 291 23 23 chr1 23993857 23993943 -218670410 - MER5C DNA MER1_type -238 86 1 576 171 19 95 chr1 23993952 23994015 -218670338 - MIR SINE MIR -90 172 106 2427 80 0 16 chr1 23994015 23994327 -218670026 - AluSg SINE Alu -3 307 1 576 171 19 95 chr1 23994327 23994421 -218669932 - MIR SINE MIR -156 106 27 387 217 33 22 chr1 23994596 23994688 -218669665 + L2 LINE L2 3180 3272 0 461 235 61 15 chr1 23994793 23994925 -218669428 + MIR SINE MIR 16 153 -109 2084 133 3 23 chr1 23994928 23995230 -218669123 - AluSx SINE Alu -16 296 1 482 261 94 57 chr1 23995232 23995477 -218668876 - L2 LINE L2 0 3313 3060 624 227 130 5 chr1 23995485 23995670 -218668683 + L1ME3 LINE L1 5889 6096 -66 2366 218 75 31 chr1 23995739 23995804 -218668549 - L2 LINE L2 -248 3065 3004 2153 147 3 0 chr1 23995804 23996110 -218668243 + AluSx SINE Alu 1 307 -5 2366 218 75 31 chr1 23996110 23996425 -218667928 - L2 LINE L2 -309 3004 2704 2120 170 31 13 chr1 23996425 23996814 -218667539 - MLT2C1 LTR ERVL 0 397 2 2366 218 75 31 chr1 23996814 23997211 -218667142 - L2 LINE L2 -609 2704 2241 882 278 76 31 chr1 23997211 23997279 -218667074 - L2 LINE L2 -2206 1108 1045 2384 78 10 0 chr1 23997279 23997573 -218666780 + AluSx SINE Alu 1 297 -15 882 278 76 31 chr1 23997573 23997925 -218666428 - L2 LINE L2 -2269 1045 669 1285 104 0 118 chr1 23997927 23998148 -218666205 + AluJb SINE Alu 1 195 -117 206 239 0 0 chr1 23998294 23998340 -218666013 + L2 LINE L2 3206 3251 -21 903 129 0 0 chr1 23998716 23998840 -218665513 + AluJb SINE Alu 1 124 -188 355 188 86 78 chr1 23999160 23999221 -218665132 + MER63C DNA MER1_type 257 316 -744 2538 85 0 0 chr1 23999221 23999527 -218664826 + AluSc SINE Alu 1 306 -3 1726 163 9 77 chr1 23999535 23999861 -218664492 + AluJo SINE Alu 1 304 -8 355 188 86 78 chr1 23999861 23999918 -218664435 + MER63C DNA MER1_type 322 385 -545 2161 70 11 21 chr1 23999924 24000231 -218664122 - AluSg SINE Alu 0 304 1 370 234 43 0 chr1 24000231 24000325 -218664028 + MER63C DNA MER1_type 821 918 -12 287 303 45 45 chr1 24000345 24000477 -218663876 - MIR SINE MIR -61 147 16 256 200 227 0 chr1 24000830 24000941 -218663412 + MIR SINE MIR 44 186 -76 1117 102 14 0 chr1 24001411 24001558 -218662795 - AluSg/x SINE Alu -1 311 163 1320 157 81 8 chr1 24001565 24001630 -218662723 + AluJo SINE Alu 52 111 -201 240 35 0 0 chr1 24001630 24001659 -218662694 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1320 157 81 8 chr1 24001659 24001829 -218662524 + AluJo SINE Alu 111 304 -8 2285 105 3 10 chr1 24002011 24002316 -218662037 + AluSq SINE Alu 1 303 -10 306 222 0 0 chr1 24002459 24002513 -218661840 + MIR SINE MIR 77 130 -132 1843 196 63 65 chr1 24002529 24002916 -218661437 - MLT1D LTR MaLR 0 505 118 1741 163 14 10 chr1 24002916 24003225 -218661128 + AluJb SINE Alu 5 312 0 1843 196 63 65 chr1 24003225 24003343 -218661010 - MLT1D LTR MaLR -387 118 1 756 225 75 0 chr1 24003707 24003880 -218660473 + MER51C LTR ERV1 455 640 0 728 277 48 0 chr1 24004050 24004238 -218660115 - MIR SINE MIR -9 253 57 253 329 61 0 chr1 24004812 24004894 -218659459 - MER91 DNA MER1_type -58 138 52 1359 168 62 65 chr1 24005148 24005457 -218658896 + AluJo SINE Alu 1 308 -4 1540 196 60 11 chr1 24005501 24005782 -218658571 - AluJb SINE Alu -17 295 1 288 206 29 0 chr1 24005886 24005954 -218658399 - MLT1G1 LTR MaLR 0 595 526 7692 25 0 0 chr1 24006027 24007643 -218656710 - L1PA4 LINE L1 0 6155 4541 1604 223 31 15 chr1 24007643 24008123 -218656230 + L1MD1 LINE L1 2550 3037 -3109 928 204 91 11 chr1 24008123 24008309 -218656044 - AluJo SINE Alu -111 201 1 240 250 29 0 chr1 24008413 24008481 -218655872 - MLT1G1 LTR MaLR 0 595 526 2102 236 49 36 chr1 24008487 24009226 -218655127 + L1MD1 LINE L1 3045 3792 -2354 1825 157 164 8 chr1 24009228 24009624 -218654729 + LOR1b LTR ERV1 4 461 0 1471 130 60 60 chr1 24009738 24009998 -218654355 + LOR1b-int LTR ERV1 122 384 -7736 2204 139 0 0 chr1 24009998 24010300 -218654053 - AluSx SINE Alu -10 302 1 1471 130 60 60 chr1 24010300 24010338 -218654015 + LOR1b-int LTR ERV1 383 420 -7700 204 217 0 0 chr1 24010338 24010384 -218653969 + (TG)n Simple_repeat Simple_repeat 2 47 0 320 261 0 0 chr1 24011256 24011321 -218653032 - LOR1-int LTR ERV1 -7531 589 525 2357 112 0 3 chr1 24011521 24011834 -218652519 + AluSx SINE Alu 1 312 0 747 321 49 41 chr1 24012137 24012651 -218651702 + HERV17 LTR ERV1 3218 3735 -3387 263 322 19 38 chr1 24012653 24012864 -218651489 + HERV17 LTR ERV1 4431 4637 -3119 * 329 318 4 90 chr1 24012857 24012978 -218651375 + HERV17 LTR ERV1 6152 6282 -2344 1866 171 7 0 chr1 24012978 24013271 -218651082 - AluJb SINE Alu -16 296 2 2284 110 3 0 chr1 24013281 24013581 -218650772 - AluSg SINE Alu -9 301 1 329 318 4 90 chr1 24013581 24013703 -218650650 + HERV17 LTR ERV1 6291 6384 -2242 402 19 0 19 chr1 24013722 24013774 -218650579 + LOR1-int LTR ERV1 7166 7216 -904 5188 184 31 56 chr1 24013774 24014022 -218650331 + L1MD1 LINE L1 3789 4042 -2200 2436 88 0 0 chr1 24014022 24014327 -218650026 + AluSg SINE Alu 1 305 -5 5188 184 31 56 chr1 24014327 24014411 -218649942 + L1MD1 LINE L1 4042 4127 -2115 2612 62 0 0 chr1 24014411 24014719 -218649634 + AluY SINE Alu 1 308 -3 5188 184 31 56 chr1 24014719 24015527 -218648826 + L1MD1 LINE L1 4127 4953 -1289 1318 164 18 123 chr1 24015527 24015868 -218648485 - AluYb8 SINE Alu -13 305 1 5188 184 31 56 chr1 24015868 24015910 -218648443 + L1MD1 LINE L1 4953 4995 -1247 1328 164 24 155 chr1 24015910 24016330 -218648023 + MLT1A1 LTR MaLR 1 365 0 5188 184 31 56 chr1 24016330 24016587 -218647766 + L1MD1 LINE L1 4995 5257 -985 1614 218 64 80 chr1 24016587 24016972 -218647381 - MLT1D LTR MaLR 0 505 128 1832 162 14 10 chr1 24016972 24017269 -218647084 + AluJo SINE Alu 2 299 -13 1614 218 64 80 chr1 24017269 24017396 -218646957 - MLT1D LTR MaLR -377 128 1 5188 184 31 56 chr1 24017396 24018320 -218646033 + L1MD1 LINE L1 5257 6085 -157 623 212 26 46 chr1 24018321 24018507 -218645846 - FRAM SINE Alu 0 183 1 463 145 118 13 chr1 24018507 24018645 -218645708 + L1MD1 LINE L1 6075 6359 0 2378 200 98 19 chr1 24018689 24018981 -218645372 + L1ME1 LINE L1 5141 5409 -757 2303 102 0 19 chr1 24018981 24019295 -218645058 + AluY SINE Alu 1 308 -3 2378 200 98 19 chr1 24019295 24019502 -218644851 + L1ME1 LINE L1 5409 5598 -568 2329 92 7 0 chr1 24019502 24019807 -218644546 + AluSg SINE Alu 1 307 -3 2378 200 98 19 chr1 24019807 24020139 -218644214 + L1ME1 LINE L1 5598 6160 -6 1287 133 38 14 chr1 24020145 24020355 -218643998 - AluJb SINE Alu -11 301 87 2296 85 3 0 chr1 24020363 24020656 -218643697 - AluSx SINE Alu -16 296 3 519 124 134 139 chr1 24020674 24020868 -218643485 - MER5C DNA MER1_type -128 196 4 429 271 49 0 chr1 24022099 24022221 -218642132 - MIR3 SINE MIR -20 188 61 430 263 0 83 chr1 24022517 24022673 -218641680 - MIR3 SINE MIR -49 159 17 258 266 221 32 chr1 24022903 24023057 -218641296 + L2 LINE L2 3130 3312 -1 572 271 111 24 chr1 24023505 24023712 -218640641 + MIR SINE MIR 37 261 -1 2358 96 3 7 chr1 24023730 24024033 -218640320 + AluSx SINE Alu 1 302 -10 1803 176 13 0 chr1 24024042 24024344 -218640009 + AluJo SINE Alu 3 308 -4 304 289 45 94 chr1 24024781 24024982 -218639371 - HAL1 LINE L1 -1 2506 2316 1764 241 64 39 chr1 24025025 24025587 -218638766 - L1MC4a LINE L1 -1849 5959 5375 2415 99 0 3 chr1 24025587 24025901 -218638452 - AluSq SINE Alu 0 313 1 1764 241 64 39 chr1 24025901 24026027 -218638326 - L1MC4a LINE L1 -2433 5375 5254 1482 166 8 4 chr1 24026099 24026334 -218638019 - AluJo SINE Alu -76 236 1 404 311 64 21 chr1 24027119 24027316 -218637037 + MIR SINE MIR 40 254 -8 235 160 15 118 chr1 24027694 24027782 -218636571 + MIR SINE MIR 84 141 -67 2587 74 0 3 chr1 24028283 24028592 -218635761 + AluSq SINE Alu 1 308 -5 1694 209 0 0 chr1 24028723 24029029 -218635324 - AluJb SINE Alu -6 306 1 594 274 99 24 chr1 24029084 24029296 -218635057 - MIR SINE MIR -1 261 34 2230 131 0 3 chr1 24029300 24029613 -218634740 - AluSx SINE Alu 0 312 1 2101 100 0 4 chr1 24029724 24029995 -218634358 - AluSg SINE Alu -40 270 1 326 326 79 47 chr1 24030155 24030434 -218633919 - L3 LINE CR1 -270 1307 1020 484 296 87 112 chr1 24030523 24030962 -218633391 + L2 LINE L2 2845 3272 0 2162 99 0 53 chr1 24031883 24032186 -218632167 - AluSx SINE Alu -25 287 1 390 262 134 0 chr1 24032217 24032381 -218631972 + MLT1H LTR MaLR 115 300 -249 408 218 46 20 chr1 24032434 24032565 -218631788 + MLT1H LTR MaLR 403 549 0 395 328 11 0 chr1 24033021 24033157 -218631196 - MIR SINE MIR -62 146 9 249 182 0 0 chr1 24033630 24033674 -218630679 + L2 LINE L2 3016 3059 -213 965 87 0 0 chr1 24033674 24033801 -218630552 - THE1C LTR MaLR 0 375 249 1305 177 23 0 chr1 24033801 24034061 -218630292 + L1MB7 LINE L1 5901 6166 -18 406 171 143 19 chr1 24034070 24034175 -218630178 + MIR SINE MIR 145 262 0 376 296 10 10 chr1 24034170 24034268 -218630085 - L2 LINE L2 -21 3251 3154 * 318 266 204 0 chr1 24034432 24034545 -218629808 + L1M4 LINE L1 3284 3419 -2727 544 278 111 21 chr1 24034545 24034879 -218629474 + L2 LINE L2 2175 2538 -776 1824 161 0 21 chr1 24034903 24035036 -218629317 + AluJb SINE Alu 3 137 -175 2108 159 0 0 chr1 24035036 24035344 -218629009 + AluJb SINE Alu 1 308 -4 1824 161 0 21 chr1 24035344 24035496 -218628857 + AluJb SINE Alu 137 282 -30 267 203 0 0 chr1 24035511 24035570 -218628783 + (CATA)n Simple_repeat Simple_repeat 2 60 0 180 97 0 0 chr1 24035594 24035625 -218628728 + (GA)n Simple_repeat Simple_repeat 2 32 0 448 267 122 22 chr1 24035686 24035866 -218628487 + L2 LINE L2 3114 3311 -2 310 203 0 0 chr1 24036389 24036448 -218627905 - L1ME LINE L1 -739 5431 5373 954 212 126 0 chr1 24036594 24036825 -218627528 + MIR SINE MIR 1 260 -2 351 127 36 0 chr1 24036838 24036893 -218627460 - AluJ/FRAM SINE Alu -13 289 233 1013 135 0 0 chr1 24036894 24037027 -218627326 - AluJo/FLAM SINE Alu -179 133 1 305 258 31 0 chr1 24037203 24037300 -218627053 - L1ME LINE L1 -1161 4985 4886 208 220 40 0 chr1 24037844 24037894 -218626459 + L2 LINE L2 3212 3263 -9 413 325 34 0 chr1 24037906 24038023 -218626330 + MIR SINE MIR 33 153 -55 1847 207 55 16 chr1 24038114 24038507 -218625846 + L1ME1 LINE L1 5702 6115 -51 1845 132 4 11 chr1 24038507 24038780 -218625573 + AluJo SINE Alu 33 303 -9 1847 207 55 16 chr1 24038780 24038826 -218625527 + L1ME1 LINE L1 6115 6158 -8 273 315 67 0 chr1 24039064 24039153 -218625200 - MIR SINE MIR -118 144 50 203 277 32 64 chr1 24039557 24039630 -218624723 - L2 LINE L2 -2 3270 3201 573 250 100 25 chr1 24039630 24039830 -218624523 + MIR SINE MIR 1 215 -47 477 0 0 0 chr1 24040089 24040142 -218624211 + (ATG)n Simple_repeat Simple_repeat 3 55 0 552 231 19 0 chr1 24040520 24040628 -218623725 - MER81 DNA DNA -3 111 2 521 253 136 40 chr1 24041238 24041436 -218622917 + MIR SINE MIR 40 256 -6 1522 155 7 54 chr1 24041454 24041478 -218622875 - AluJo SINE Alu -17 295 271 1586 167 29 20 chr1 24041478 24041784 -218622569 + AluJb SINE Alu 1 309 -3 1522 155 7 54 chr1 24041784 24042056 -218622297 - AluJo SINE Alu -41 271 13 3770 124 40 30 chr1 24042056 24042679 -218621674 + MER4E LTR ERV1 10 639 -127 1942 137 7 3 chr1 24042679 24042985 -218621368 + AluSx SINE Alu 1 307 -5 3770 124 40 30 chr1 24042985 24043115 -218621238 + MER4E LTR ERV1 639 766 0 586 249 85 42 chr1 24043264 24043429 -218620924 - MER5B DNA MER1_type -6 172 1 503 212 40 0 chr1 24043494 24043593 -218620760 - MER5A DNA MER1_type -80 109 7 410 291 26 8 chr1 24043755 24043872 -218620481 - MIR3 SINE MIR -48 160 42 356 306 159 0 chr1 24043948 24044118 -218620235 - MIR SINE MIR -24 238 42 258 171 24 61 chr1 24044150 24044232 -218620121 + MIR SINE MIR 170 248 -14 255 31 0 0 chr1 24044256 24044288 -218620065 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 213 191 106 0 chr1 24044333 24044380 -218619973 + L2 LINE L2 3170 3221 -51 186 221 147 29 chr1 24044733 24044801 -218619552 + L2 LINE L2 2714 2789 -525 819 255 21 34 chr1 24044832 24045067 -218619286 + MIR SINE MIR 31 262 0 1916 133 13 22 chr1 24045155 24045470 -218618883 + AluSx SINE Alu 1 312 0 468 35 0 0 chr1 24045470 24045528 -218618825 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 1875 124 0 0 chr1 24045537 24045810 -218618543 + AluSx SINE Alu 1 273 -39 1069 117 6 6 chr1 24045815 24045994 -218618359 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2085 114 0 3 chr1 24046040 24046338 -218618015 + AluY SINE Alu 1 297 -14 222 224 171 0 chr1 24046450 24046526 -218617827 - L2 LINE L2 -6 3266 3178 1369 263 49 23 chr1 24046533 24046701 -218617652 - L2 LINE L2 -4 3309 3147 1430 165 3 111 chr1 24046701 24046848 -218617505 + AluJb SINE Alu 1 94 -208 2352 73 0 19 chr1 24046848 24047165 -218617188 + AluY SINE Alu 1 311 0 1430 165 3 111 chr1 24047165 24047351 -218617002 + AluJb SINE Alu 94 298 -4 1369 263 49 23 chr1 24047351 24047771 -218616582 - L2 LINE L2 -166 3147 2708 864 171 0 0 chr1 24047773 24047913 -218616440 - FRAM SINE Alu -22 154 15 1745 161 30 3 chr1 24047936 24048240 -218616113 - AluJo SINE Alu 0 312 1 1977 122 3 7 chr1 24048245 24048588 -218615765 - AluSx SINE Alu 0 312 1 518 174 0 12 chr1 24048613 24048699 -218615654 + AluJo SINE Alu 77 161 -151 24 0 0 0 chr1 24048708 24048732 -218615621 + AT_rich Low_complexity Low_complexity 1 24 0 477 261 92 0 chr1 24048732 24048885 -218615468 - L2 LINE L2 -614 2700 2534 1370 126 76 9 chr1 24048885 24049108 -218615245 + MER2 DNA MER2_type 1 238 -107 2002 116 20 7 chr1 24049108 24049411 -218614942 + AluSg SINE Alu 1 307 -3 302 241 230 0 chr1 24049411 24049498 -218614855 - L2 LINE L2 -1084 2230 2124 3847 87 31 61 chr1 24050792 24051288 -218613065 - MER4A LTR ERV1 0 600 125 2033 104 23 3 chr1 24051288 24051587 -218612766 - AluSx SINE Alu -7 305 1 3847 87 31 61 chr1 24051587 24051709 -218612644 - MER4A LTR ERV1 -475 125 1 2166 89 0 40 chr1 24052291 24052617 -218611736 + AluSq SINE Alu 1 313 0 2401 78 0 0 chr1 24052999 24053305 -218611048 + AluSg SINE Alu 1 306 -4 765 256 57 5 chr1 24053876 24054087 -218610266 - LTR33 LTR ERVL -299 222 1 1202 161 24 140 chr1 24054183 24054555 -218609798 + MLT1A1 LTR MaLR 1 329 -36 473 141 0 0 chr1 24054557 24054628 -218609725 + FLAM SINE Alu 57 127 -16 361 89 0 0 chr1 24054628 24054673 -218609680 + MLT1A1 LTR MaLR 347 391 -5 1607 173 73 90 chr1 24054678 24054774 -218609579 + MLT1A1-int LTR MaLR 1 97 -1638 1517 143 26 68 chr1 24054774 24055108 -218609245 - AluSx SINE Alu 0 312 1 1607 173 73 90 chr1 24055108 24055132 -218609221 + MLT1A1-int LTR MaLR 97 120 -1615 2244 95 0 0 chr1 24055132 24055436 -218608917 - AluSx SINE Alu -8 304 1 1607 173 73 90 chr1 24055436 24055724 -218608629 + MLT1A1-int LTR MaLR 120 403 -1332 3922 105 6 48 chr1 24055724 24056350 -218608003 + MER4A LTR ERV1 1 600 0 2957 131 259 40 chr1 24056353 24056824 -218607529 + MER4A-int LTR ERV1 1 367 -6231 1844 150 0 19 chr1 24056824 24057131 -218607222 + AluJb SINE Alu 1 301 -11 2957 131 259 40 chr1 24057131 24057338 -218607015 + MER4A-int LTR ERV1 367 828 -5770 1423 224 31 48 chr1 24057359 24057716 -218606637 + MER4A-int LTR ERV1 1850 2200 -4131 19384 118 88 70 chr1 24057737 24058077 -218606276 + MER4-int LTR ERV1 195 528 -6070 2223 114 0 0 chr1 24058077 24058384 -218605969 + AluSx SINE Alu 1 307 -5 19384 118 88 70 chr1 24058384 24058598 -218605755 + MER4-int LTR ERV1 528 737 -5861 2098 107 23 3 chr1 24058598 24058898 -218605455 + AluSx SINE Alu 1 306 -6 19384 118 88 70 chr1 24058898 24059537 -218604816 + MER4-int LTR ERV1 737 1363 -5235 2107 99 0 3 chr1 24059537 24059872 -218604481 + AluSx SINE Alu 1 334 0 19384 118 88 70 chr1 24059872 24059921 -218604432 + MER4-int LTR ERV1 1363 1410 -5188 2315 82 0 0 chr1 24059921 24060227 -218604126 + AluY SINE Alu 1 306 -5 19384 118 88 70 chr1 24060227 24060587 -218603766 + MER4-int LTR ERV1 1410 1762 -4836 1991 145 3 0 chr1 24060587 24060890 -218603463 + AluSq SINE Alu 1 304 -9 19384 118 88 70 chr1 24060890 24061424 -218602929 + MER4-int LTR ERV1 1762 2285 -4313 1850 113 0 0 chr1 24061424 24061680 -218602673 - AluSx SINE Alu -20 292 37 19384 118 88 70 chr1 24061680 24062421 -218601932 + MER4-int LTR ERV1 2285 3012 -3586 2111 102 3 3 chr1 24062421 24062715 -218601638 - AluSc SINE Alu -15 294 1 19384 118 88 70 chr1 24062715 24064259 -218600094 + MER4-int LTR ERV1 3012 4528 -2070 2307 103 0 0 chr1 24064259 24064569 -218599784 + AluSg SINE Alu 1 310 0 19384 118 88 70 chr1 24064569 24065452 -218598901 + MER4-int LTR ERV1 4528 6473 -125 1647 149 123 20 chr1 24065454 24065862 -218598491 - LTR7 LTR ERV1 0 450 1 3079 159 18 21 chr1 24065862 24066421 -218597932 - HERVH LTR ERV1 0 7713 7157 * 14290 112 30 30 chr1 24066414 24068617 -218595736 - HERVH LTR ERV1 -1697 6016 3813 17944 136 3 18 chr1 24068619 24071473 -218592880 - HERVH LTR ERV1 -4128 3585 773 1999 184 109 16 chr1 24071490 24071941 -218592412 - HERVH LTR ERV1 -7219 494 2 1709 181 108 10 chr1 24071945 24072353 -218592000 - LTR7 LTR ERV1 -2 448 1 751 123 0 87 chr1 24072353 24072426 -218591927 + MER4A-int LTR ERV1 6471 6528 -70 889 150 0 0 chr1 24072426 24072559 -218591794 + FLAM_C SINE Alu 1 133 0 751 123 0 87 chr1 24072559 24072623 -218591730 + MER4A-int LTR ERV1 6528 6596 -2 3571 88 38 97 chr1 24072629 24073071 -218591282 + MER4A LTR ERV1 1 395 -205 1846 104 0 11 chr1 24073071 24073331 -218591022 - AluSx SINE Alu -19 293 37 3571 88 38 97 chr1 24073331 24073526 -218590827 + MER4A LTR ERV1 395 600 0 5519 200 65 71 chr1 24073531 24073673 -218590680 + MSTD-int LTR MaLR 404 545 -1190 1800 133 3 27 chr1 24073673 24073967 -218590386 + AluSg SINE Alu 1 287 -23 5519 200 65 71 chr1 24073967 24074848 -218589505 + MSTD-int LTR MaLR 545 1420 -315 1871 142 7 3 chr1 24074848 24075144 -218589209 + AluJb SINE Alu 1 297 -15 5519 200 65 71 chr1 24075144 24075459 -218588894 + MSTD-int LTR MaLR 1420 1735 0 974 227 61 88 chr1 24075459 24075610 -218588743 + MSTD LTR MaLR 1 155 -241 2185 67 0 64 chr1 24075610 24075756 -218588597 + AluY SINE Alu 1 118 -193 2515 45 0 10 chr1 24075756 24076070 -218588283 + AluY SINE Alu 1 311 0 2185 67 0 64 chr1 24076070 24076236 -218588117 + AluY SINE Alu 118 293 -18 974 227 61 88 chr1 24076236 24076459 -218587894 + MSTD LTR MaLR 155 365 -31 853 188 0 0 chr1 24076473 24076622 -218587731 - AluJb SINE Alu -30 282 134 1966 145 0 7 chr1 24076622 24076926 -218587427 - AluJb SINE Alu -10 302 1 225 91 0 0 chr1 24076930 24076963 -218587390 + MSTD LTR MaLR 342 374 0 580 286 6 37 chr1 24076972 24077133 -218587220 - MIR SINE MIR -89 173 18 1994 113 40 30 chr1 24077218 24077520 -218586833 - AluSx SINE Alu -7 305 1 289 310 0 60 chr1 24077529 24077645 -218586708 - L2 LINE L2 -20 3293 3185 638 244 143 9 chr1 24077934 24078151 -218586202 - MER113 DNA MER1_type? -43 478 233 2238 111 0 0 chr1 24078153 24078459 -218585894 + AluSq SINE Alu 1 306 -7 188 310 132 81 chr1 24079194 24079337 -218585016 - MIR SINE MIR 0 262 107 2063 77 3 95 chr1 24079337 24079673 -218584680 - AluSq SINE Alu -8 305 1 188 310 132 81 chr1 24079673 24079703 -218584650 - MIR SINE MIR -155 107 80 1814 132 30 7 chr1 24080016 24080320 -218584033 + AluJb SINE Alu 1 311 -1 1009 163 36 50 chr1 24080538 24080759 -218583594 + MER20 DNA MER1_type 2 219 0 1758 144 24 10 chr1 24080818 24081116 -218583237 - AluJb SINE Alu -10 302 1 2102 128 0 0 chr1 24081117 24081421 -218582932 - AluSx SINE Alu -8 304 1 244 266 57 65 chr1 24081612 24081736 -218582617 - MIR SINE MIR -62 146 24 288 287 0 28 chr1 24082147 24082255 -218582098 - MIR SINE MIR 0 262 158 1483 141 15 41 chr1 24082490 24082760 -218581593 - AluJo SINE Alu 0 312 50 2118 126 0 0 chr1 24082780 24083089 -218581264 - AluSx SINE Alu -1 311 3 2193 74 47 0 chr1 24083116 24083415 -218580938 + AluSq SINE Alu 1 313 0 3125 122 44 8 chr1 24083431 24083956 -218580397 + L1MB2 LINE L1 5625 6168 -3 1139 84 0 7 chr1 24083998 24084152 -218580201 - AluSx SINE Alu -159 153 1 1733 154 85 3 chr1 24084225 24084543 -218579810 - MER7A DNA MER2_type -4 342 1 988 188 0 0 chr1 24084580 24084740 -218579613 - FRAM SINE Alu -6 160 1 424 288 26 0 chr1 24084742 24084895 -218579458 - L1ME LINE L1 -366 5755 5599 768 208 56 19 chr1 24084909 24085125 -218579228 - HAL1 LINE L1 -6 2501 2278 558 0 0 0 chr1 24085126 24085188 -218579165 + (TA)n Simple_repeat Simple_repeat 1 62 0 2251 49 3 3 chr1 24085189 24085477 -218578876 - AluY SINE Alu -23 288 1 320 284 91 0 chr1 24085570 24085658 -218578695 - HAL1 LINE L1 -265 2242 2147 2214 109 0 0 chr1 24085659 24085971 -218578382 + AluSx SINE Alu 1 312 0 460 196 0 0 chr1 24085988 24086080 -218578273 - HAL1 LINE L1 -342 2165 2074 747 185 0 30 chr1 24086084 24086219 -218578134 - FLAM_A SINE Alu -1 132 2 948 203 41 45 chr1 24086315 24086561 -218577792 - L1ME2 LINE L1 -9 6155 5911 224 234 288 36 chr1 24087030 24087141 -218577212 + L2 LINE L2 3175 3313 0 195 139 0 0 chr1 24087562 24087598 -218576755 + (CGG)n Simple_repeat Simple_repeat 2 37 0 437 345 35 6 chr1 24088599 24088770 -218575583 - MIR SINE MIR -29 233 58 2180 70 7 10 chr1 24089328 24089628 -218574725 + AluSq SINE Alu 1 299 -14 4078 159 105 36 chr1 24089628 24090273 -218574080 - L1MB7 LINE L1 -12 6172 5573 2145 102 3 16 chr1 24090273 24090588 -218573765 - AluSp SINE Alu -2 311 1 1934 119 10 10 chr1 24090594 24090896 -218573457 - AluSx SINE Alu 0 312 11 4078 159 105 36 chr1 24090896 24091733 -218572620 - L1MB7 LINE L1 -615 5569 4563 1759 170 3 0 chr1 24091809 24092097 -218572256 - AluJo SINE Alu -23 289 1 489 260 27 14 chr1 24092400 24092546 -218571807 - MER69A DNA AcHobo -29 148 1 195 295 238 33 chr1 24092717 24092839 -218571514 + MIR SINE MIR 101 247 -15 768 166 122 11 chr1 24093036 24093217 -218571136 - MER3 DNA MER1_type -4 205 5 2229 114 3 0 chr1 24093278 24093577 -218570776 - AluSq SINE Alu -12 301 2 1885 167 10 0 chr1 24093758 24094063 -218570290 + AluJb SINE Alu 1 308 -4 505 75 12 0 chr1 24094213 24094293 -218570060 - L1MA1 LINE L1 0 6302 6222 1804 164 30 3 chr1 24094326 24094630 -218569723 - AluJb SINE Alu 0 312 1 24 53 0 0 chr1 24094997 24095035 -218569318 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 24095045 24095068 -218569285 + AT_rich Low_complexity Low_complexity 1 23 0 1557 160 22 47 chr1 24095352 24095670 -218568683 - AluJb SINE Alu -2 310 1 811 158 17 90 chr1 24096100 24096277 -218568076 - AluJb SINE Alu -12 300 137 21 36 0 0 chr1 24097273 24097301 -218567052 + AT_rich Low_complexity Low_complexity 1 28 0 2327 99 0 0 chr1 24097586 24097888 -218566465 - AluSx SINE Alu -10 302 1 251 329 0 0 chr1 24098716 24098786 -218565567 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1527 77 16 0 chr1 24100860 24101054 -218563299 - AluSg/x SINE Alu -24 286 90 405 111 0 0 chr1 24101054 24101108 -218563245 - Alu SINE Alu -254 54 1 2084 106 47 10 chr1 24101200 24101501 -218562852 + AluSx SINE Alu 1 312 0 284 298 98 64 chr1 24101633 24101898 -218562455 - L2 LINE L2 -423 2891 2618 2219 116 3 0 chr1 24103146 24103448 -218560905 - AluSp SINE Alu -8 305 3 1964 135 10 16 chr1 24104946 24105078 -218559275 + AluSx SINE Alu 1 132 -180 207 0 0 0 chr1 24105078 24105101 -218559252 + (CA)n Simple_repeat Simple_repeat 2 24 0 1964 135 10 16 chr1 24105101 24105271 -218559082 + AluSx SINE Alu 132 301 -11 1072 157 55 0 chr1 24105371 24105588 -218558765 - L1MA8 LINE L1 -3 6288 6060 336 24 0 0 chr1 24106199 24106240 -218558113 + (TG)n Simple_repeat Simple_repeat 2 42 0 562 141 0 22 chr1 24106857 24106949 -218557404 - AluJ/FLAM SINE Alu -213 99 10 198 383 64 14 chr1 24107293 24107434 -218556919 + L2 LINE L2 2560 2707 -607 185 336 74 25 chr1 24107764 24107886 -218556467 + L2 LINE L2 3159 3286 -27 1677 172 38 14 chr1 24108463 24108753 -218555600 + AluJo SINE Alu 1 297 -15 2438 85 0 0 chr1 24109384 24109689 -218554664 - AluSg SINE Alu -5 305 1 23 33 0 0 chr1 24109780 24109810 -218554543 + AT_rich Low_complexity Low_complexity 1 30 0 2857 6 0 0 chr1 24110389 24110700 -218553653 - AluYa5 SINE Alu 0 311 1 2161 119 0 0 chr1 24110711 24110997 -218553356 - AluSx SINE Alu -26 286 1 330 214 66 148 chr1 24113971 24114153 -218550200 - MIR3 SINE MIR -10 198 32 1604 159 26 43 chr1 24115568 24115870 -218548483 + AluJb SINE Alu 1 297 -15 26 0 0 0 chr1 24116365 24116391 -218547962 + AT_rich Low_complexity Low_complexity 1 26 0 2268 103 0 13 chr1 24116815 24117125 -218547228 + AluSx SINE Alu 1 306 -6 2099 89 0 4 chr1 24117387 24117656 -218546697 + AluSq SINE Alu 38 305 -8 236 241 132 32 chr1 24118498 24118718 -218545635 - L1ME4a LINE L1 -10 6111 5870 2091 120 3 13 chr1 24118751 24119051 -218545302 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr1 24119060 24119082 -218545271 + AT_rich Low_complexity Low_complexity 1 22 0 509 241 153 17 chr1 24119166 24119402 -218544951 - L1ME4a LINE L1 -304 5817 5550 409 306 161 19 chr1 24120597 24120921 -218543432 + L2 LINE L2 1945 2314 -1000 244 296 42 0 chr1 24121097 24121168 -218543185 + MIR SINE MIR 31 104 -158 237 242 32 16 chr1 24121173 24121235 -218543118 - L3 LINE CR1 -350 1227 1165 2030 162 0 0 chr1 24121325 24121634 -218542719 - AluJb SINE Alu -3 309 1 799 154 0 23 chr1 24122227 24122357 -218541996 + FLAM_A SINE Alu 3 129 -4 441 182 0 0 chr1 24122454 24122531 -218541822 - AluJb SINE Alu -32 280 204 241 117 21 21 chr1 24122532 24122586 -218541767 - Alu SINE Alu -152 150 105 1339 222 31 3 chr1 24122587 24122875 -218541478 - AluJo SINE Alu -16 296 1 32 0 0 0 chr1 24123259 24123291 -218541062 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 24124607 24124632 -218539721 + AT_rich Low_complexity Low_complexity 1 25 0 1447 111 120 0 chr1 24125749 24125966 -218538387 - AluY SINE Alu -9 302 60 1354 178 66 4 chr1 24125979 24126237 -218538116 - AluJb SINE Alu -16 296 23 602 136 0 0 chr1 24126239 24126327 -218538026 - AluS SINE Alu -225 88 1 623 250 21 0 chr1 24126448 24126592 -218537761 - AluJo SINE Alu -161 151 5 180 179 0 0 chr1 24127195 24127234 -218537119 + (TA)n Simple_repeat Simple_repeat 1 39 0 195 269 60 15 chr1 24129101 24129168 -218535185 + MER5C DNA MER1_type 17 86 -238 2138 121 3 7 chr1 24129609 24129907 -218534446 - AluSx SINE Alu -15 297 1 338 320 59 35 chr1 24129952 24130155 -218534198 - MIR SINE MIR -41 221 14 276 53 0 0 chr1 24131166 24131204 -218533149 + (TG)n Simple_repeat Simple_repeat 2 39 0 259 207 35 35 chr1 24131654 24131712 -218532641 - L2 LINE L2 0 3272 3215 1667 169 10 14 chr1 24131843 24132138 -218532215 - AluJb SINE Alu -18 294 1 246 62 0 0 chr1 24133666 24133698 -218530655 + (TTG)n Simple_repeat Simple_repeat 2 33 0 200 259 0 19 chr1 24136783 24136837 -218527516 + MIR3 SINE MIR 154 206 -2 1259 113 133 0 chr1 24137348 24137551 -218526802 + MER30 DNA MER1_type 1 230 0 220 267 33 33 chr1 24137910 24138000 -218526353 + MIR SINE MIR 103 192 -70 2008 141 7 10 chr1 24138138 24138437 -218525916 + AluSx SINE Alu 1 298 -14 2452 75 0 0 chr1 24138477 24138772 -218525581 + AluY SINE Alu 3 297 -14 535 274 168 0 chr1 24139596 24139793 -218524560 + MIR SINE MIR 32 261 -1 2181 104 21 0 chr1 24140600 24140888 -218523465 - AluSq SINE Alu -19 294 1 212 302 0 0 chr1 24141043 24141096 -218523257 - L2 LINE L2 -38 3234 3182 285 249 73 42 chr1 24141432 24141452 -218522901 - L1MA10 LINE L1 -2 6332 6313 2930 197 128 22 chr1 24141452 24142384 -218521969 - L1ME1 LINE L1 -11 6155 5163 654 150 39 24 chr1 24142384 24142511 -218521842 - AluJb SINE Alu -8 304 176 1856 219 133 17 chr1 24142513 24143161 -218521192 - L1ME1 LINE L1 -1002 5144 4422 1995 102 53 7 chr1 24143250 24143533 -218520820 + AluSx SINE Alu 1 296 -16 32 75 0 0 chr1 24143543 24143610 -218520743 + AT_rich Low_complexity Low_complexity 1 67 0 2389 79 3 0 chr1 24143614 24143906 -218520447 + AluSq SINE Alu 1 293 -20 2079 114 28 10 chr1 24144638 24144928 -218519425 + AluSg SINE Alu 1 295 -15 686 155 0 0 chr1 24145549 24145652 -218518701 - MER46A DNA MER2_type -89 147 45 413 269 92 0 chr1 24146709 24146828 -218517525 + MIR SINE MIR 28 157 -105 182 245 20 0 chr1 24147766 24147815 -218516538 - L2 LINE L2 -90 3223 3174 247 299 109 43 chr1 24148285 24148725 -218515628 + L2 LINE L2 2478 3029 -243 1370 186 145 49 chr1 24152107 24152494 -218511859 - MLT1D LTR MaLR -17 488 65 233 250 29 29 chr1 24155115 24155183 -218509170 - MIR3 SINE MIR -31 177 110 537 268 39 22 chr1 24155335 24155514 -218508839 - MIR3 SINE MIR -7 201 20 1231 97 0 0 chr1 24157550 24157705 -218506648 - AluSg/x SINE Alu -21 291 137 2332 93 10 0 chr1 24157705 24158006 -218506347 - AluSq SINE Alu -9 304 1 493 285 0 21 chr1 24158081 24158225 -218506128 + MIR3 SINE MIR 6 146 -62 214 309 29 0 chr1 24159059 24159127 -218505226 + GA-rich Low_complexity Low_complexity 3 72 0 200 139 116 0 chr1 24162421 24162464 -218501889 + L2 LINE L2 3264 3311 -2 2807 247 84 46 chr1 24163247 24164478 -218499875 + L1MEd LINE L1 1 1271 -4858 1009 216 105 73 chr1 24164574 24164639 -218499714 - MLT1A1 LTR MaLR 0 365 304 2098 138 0 0 chr1 24164639 24164936 -218499417 + AluSx SINE Alu 1 297 -15 1009 216 105 73 chr1 24164936 24165213 -218499140 - MLT1A1 LTR MaLR -61 304 12 866 215 22 154 chr1 24165283 24165517 -218498836 - L2 LINE L2 -640 2674 2515 1363 181 75 43 chr1 24165517 24165798 -218498555 + AluJo SINE Alu 1 290 -22 866 215 22 154 chr1 24165798 24165973 -218498380 - L2 LINE L2 -799 2515 2319 1439 283 111 33 chr1 24165977 24166646 -218497707 - L2 LINE L2 -2063 1251 531 341 280 11 0 chr1 24167329 24167422 -218496931 + L1MB7 LINE L1 6082 6175 -9 237 282 96 19 chr1 24167748 24167904 -218496449 + L2 LINE L2 2723 2890 -424 232 276 0 17 chr1 24168092 24168150 -218496203 + L2 LINE L2 3189 3245 -27 203 301 123 0 chr1 24169324 24169397 -218494956 - MIR SINE MIR -161 101 20 226 322 0 0 chr1 24169787 24169846 -218494507 - L2 LINE L2 0 3272 3214 277 255 75 9 chr1 24169913 24170019 -218494334 + L2 LINE L2 3038 3150 -163 594 263 0 26 chr1 24170471 24170627 -218493726 - MER58A DNA MER1_type -33 191 40 690 186 0 0 chr1 24170627 24170745 -218493608 + FLAM_C SINE Alu 2 119 -24 295 68 102 0 chr1 24170835 24170894 -218493459 + (CATTT)n Simple_repeat Simple_repeat 3 67 0 1483 154 43 53 chr1 24170894 24171193 -218493160 - AluJo SINE Alu -16 296 1 638 237 79 28 chr1 24171377 24171554 -218492799 - L3 LINE CR1 -2 1575 1390 394 228 83 62 chr1 24171561 24171754 -218492599 + L2 LINE L2 3105 3301 -12 959 68 8 0 chr1 24171758 24171890 -218492463 + (GGGA)n Simple_repeat Simple_repeat 1 133 0 2205 115 3 16 chr1 24172119 24172432 -218491921 - AluSx SINE Alu -3 309 1 266 307 110 16 chr1 24172556 24172683 -218491670 + L2 LINE L2 3134 3272 0 287 333 0 12 chr1 24172683 24172767 -218491586 + L3 LINE CR1 1026 1108 -469 247 242 95 21 chr1 24173079 24173174 -218491179 - L2 LINE L2 -669 2645 2544 226 287 9 46 chr1 24173201 24173309 -218491044 - L3 LINE CR1 -575 1002 899 568 261 206 10 chr1 24173343 24173542 -218490811 + MIR SINE MIR 2 239 -23 23 0 0 0 chr1 24173558 24173581 -218490772 + AT_rich Low_complexity Low_complexity 1 23 0 190 331 196 20 chr1 24173656 24173804 -218490549 - L3 LINE CR1 -882 695 522 267 302 198 0 chr1 24174081 24174207 -218490146 - L3 LINE CR1 -1197 380 230 1957 146 0 22 chr1 24174273 24174588 -218489765 + AluJb SINE Alu 5 312 0 1384 208 66 65 chr1 24174624 24175373 -218488980 + L2 LINE L2 2525 3256 -57 2136 101 0 33 chr1 24175467 24175773 -218488580 + AluSx SINE Alu 1 296 -16 1813 147 32 3 chr1 24176283 24176568 -218487785 + AluJo SINE Alu 9 301 -11 491 246 194 0 chr1 24176575 24176750 -218487603 + MIR SINE MIR 51 259 -3 289 299 126 31 chr1 24177391 24177432 -218486921 - MIR3 SINE MIR -12 196 160 1916 147 39 25 chr1 24177432 24177787 -218486566 + MER46B DNA MER2_type 1 235 -1 289 299 126 31 chr1 24177787 24177872 -218486481 - MIR3 SINE MIR -48 160 58 312 233 150 45 chr1 24177975 24178108 -218486245 - MIR SINE MIR -108 154 8 315 71 0 0 chr1 24178572 24178614 -218485739 + (CA)n Simple_repeat Simple_repeat 2 43 0 534 185 0 0 chr1 24178753 24178845 -218485508 - FLAM_C SINE Alu -15 128 37 2271 112 0 0 chr1 24178866 24179169 -218485184 + AluSx SINE Alu 1 303 -9 1621 185 0 34 chr1 24179217 24179515 -218484838 + AluJo SINE Alu 1 288 -24 205 143 41 0 chr1 24179727 24179776 -218484577 + (CA)n Simple_repeat Simple_repeat 2 52 0 361 241 9 17 chr1 24180339 24180455 -218483898 - MIR3 SINE MIR -22 186 72 2165 225 112 59 chr1 24180524 24181061 -218483292 + L1ME LINE L1 47 554 -5516 1721 143 7 55 chr1 24181061 24181392 -218482961 + AluJo SINE Alu 3 319 0 2165 225 112 59 chr1 24181392 24181548 -218482805 + L1ME LINE L1 554 700 -5370 2457 86 0 0 chr1 24181548 24181852 -218482501 + AluSc SINE Alu 1 304 -5 2165 225 112 59 chr1 24181852 24182049 -218482304 + L1ME LINE L1 700 986 -5084 353 320 54 14 chr1 24182709 24182856 -218481497 + MIR3 SINE MIR 17 169 -39 2477 68 0 3 chr1 24183497 24183790 -218480563 - AluSx SINE Alu -20 292 1 1557 196 35 3 chr1 24183915 24184047 -218480306 + AluJo SINE Alu 1 127 -185 1731 154 37 0 chr1 24184047 24184320 -218480033 + AluJo SINE Alu 1 283 -29 1557 196 35 3 chr1 24184320 24184472 -218479881 + AluJo SINE Alu 127 294 -18 345 88 29 15 chr1 24184533 24184601 -218479752 + (GAAAA)n Simple_repeat Simple_repeat 3 71 0 295 304 138 28 chr1 24185152 24185333 -218479020 + MIR SINE MIR 25 225 -37 207 0 0 0 chr1 24185403 24185426 -218478927 + (TC)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr1 24185456 24185478 -218478875 + GC_rich Low_complexity Low_complexity 1 22 0 2337 104 0 0 chr1 24185758 24186067 -218478286 + AluSg SINE Alu 1 309 -1 2008 123 18 4 chr1 24186078 24186355 -218477998 + AluSx SINE Alu 11 291 -21 1053 124 0 0 chr1 24187200 24187345 -218477008 - FRAM SINE Alu -5 171 27 273 309 0 49 chr1 24187373 24187454 -218476899 + MIR SINE MIR 47 123 -85 316 343 84 0 chr1 24187561 24187704 -218476649 + L2 LINE L2 3102 3256 -16 1680 192 0 19 chr1 24187874 24188186 -218476167 - AluJb SINE Alu -1 311 6 1586 150 55 29 chr1 24188331 24188605 -218475748 - AluJo SINE Alu -30 282 2 215 246 105 26 chr1 24188637 24188751 -218475602 - MIR SINE MIR -45 217 95 1786 160 21 7 chr1 24189385 24189666 -218474687 + AluJb SINE Alu 1 285 -27 2277 106 0 0 chr1 24189680 24189963 -218474390 + AluSx SINE Alu 3 285 -27 222 62 0 0 chr1 24189963 24189995 -218474358 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 237 217 0 72 chr1 24190081 24190150 -218474203 + L2 LINE L2 3248 3311 -2 2436 84 0 0 chr1 24191160 24191459 -218472894 + AluSg SINE Alu 1 299 -11 455 251 126 29 chr1 24192142 24192317 -218472036 - MIR3 SINE MIR 0 208 17 225 0 0 0 chr1 24193780 24193805 -218470548 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 347 281 16 31 chr1 24193849 24193977 -218470376 - MER5A DNA MER1_type 0 189 64 623 176 9 0 chr1 24194286 24194394 -218469959 + FLAM_C SINE Alu 2 110 -33 403 333 69 11 chr1 24194400 24194589 -218469764 + L2 LINE L2 3099 3298 -15 395 314 112 5 chr1 24195111 24195299 -218469054 - MIR SINE MIR -48 214 7 2314 75 0 0 chr1 24195454 24195771 -218468582 - AluY SINE Alu 0 317 1 2448 85 3 0 chr1 24195799 24196105 -218468248 + AluSg SINE Alu 1 307 -3 2249 100 3 3 chr1 24197248 24197547 -218466806 + AluSp SINE Alu 1 299 -14 27 0 0 0 chr1 24197852 24197879 -218466474 + AT_rich Low_complexity Low_complexity 1 27 0 875 158 0 0 chr1 24198479 24198612 -218465741 - FLAM_C SINE Alu 0 133 1 845 237 82 88 chr1 24198726 24198884 -218465469 + L2 LINE L2 2804 2961 -352 2450 87 0 6 chr1 24198884 24199196 -218465157 + AluSx SINE Alu 1 310 -2 845 237 82 88 chr1 24199196 24199534 -218464819 + L2 LINE L2 2961 3297 -16 2307 99 0 0 chr1 24199627 24199934 -218464419 - AluSx SINE Alu 0 307 1 316 182 15 61 chr1 24199934 24200000 -218464353 - AluJo SINE Alu -156 146 84 254 220 0 0 chr1 24200131 24200181 -218464172 - L2 LINE L2 -10 3303 3254 281 250 220 53 chr1 24200477 24200777 -218463576 + L1MC4 LINE L1 7690 8039 -3 29 0 0 0 chr1 24201191 24201220 -218463133 + AT_rich Low_complexity Low_complexity 1 29 0 822 267 159 22 chr1 24201258 24201429 -218462924 + L1MC4 LINE L1 7177 7323 -719 2070 137 0 0 chr1 24201429 24201752 -218462601 + AluSx SINE Alu 1 323 0 822 267 159 22 chr1 24201752 24201938 -218462415 + L1MC4 LINE L1 7323 7584 -458 573 207 193 7 chr1 24201979 24202124 -218462229 + MER58B DNA MER1_type 169 340 -1 1758 169 0 10 chr1 24202147 24202442 -218461911 + AluJo SINE Alu 1 292 -20 1886 154 0 13 chr1 24202445 24202744 -218461609 + AluJb SINE Alu 1 295 -17 1197 94 29 6 chr1 24202769 24202940 -218461413 - L1PA11 LINE L1 0 6174 6000 681 155 75 18 chr1 24203051 24203243 -218461110 - MER46C DNA MER2_type -4 334 92 24 0 0 0 chr1 24203685 24203709 -218460644 + AT_rich Low_complexity Low_complexity 1 24 0 226 387 0 21 chr1 24203870 24203963 -218460390 + MIR3 SINE MIR 2 92 -116 466 83 0 0 chr1 24204174 24204234 -218460119 + Alu SINE Alu 2 61 -248 423 0 0 0 chr1 24204244 24204291 -218460062 + (CA)n Simple_repeat Simple_repeat 2 48 0 339 319 43 21 chr1 24204450 24204578 -218459775 - MIR3 SINE MIR -35 173 40 2442 52 0 33 chr1 24204578 24204883 -218459470 + AluY SINE Alu 4 298 -13 339 319 43 21 chr1 24204883 24204895 -218459458 - MIR3 SINE MIR -168 40 30 4136 142 60 51 chr1 24205066 24205307 -218459046 + L1MB7 LINE L1 5192 5429 -755 2248 119 0 0 chr1 24205307 24205601 -218458752 + AluSq SINE Alu 1 294 -19 4136 142 60 51 chr1 24205601 24205929 -218458424 + L1MB7 LINE L1 5429 5752 -432 2079 126 3 14 chr1 24205929 24206222 -218458131 - AluSx SINE Alu -22 290 1 4136 142 60 51 chr1 24206222 24206606 -218457747 + L1MB7 LINE L1 5752 6156 -28 336 24 0 0 chr1 24206606 24206647 -218457706 + (TG)n Simple_repeat Simple_repeat 2 42 0 452 139 26 9 chr1 24206647 24206669 -218457684 + (TA)n Simple_repeat Simple_repeat 2 22 -96 2172 117 17 0 chr1 24206669 24206969 -218457384 + AluSx SINE Alu 1 305 -7 452 139 26 9 chr1 24206969 24207061 -218457292 + (TA)n Simple_repeat Simple_repeat 22 118 0 1876 140 84 45 chr1 24207337 24207625 -218456728 + Tigger2a DNA MER2_type 2 308 -2400 1676 197 0 7 chr1 24207625 24207915 -218456438 + AluJo SINE Alu 12 299 -13 1876 140 84 45 chr1 24207915 24207982 -218456371 + Tigger2a DNA MER2_type 308 371 -63 1591 179 6 54 chr1 24209632 24209795 -218454558 - AluJo SINE Alu -14 298 156 2321 84 7 7 chr1 24209795 24210093 -218454260 - AluSp SINE Alu -14 299 2 1591 179 6 54 chr1 24210093 24210242 -218454111 - AluJo SINE Alu -156 156 1 459 0 0 0 chr1 24210649 24210700 -218453653 + (CA)n Simple_repeat Simple_repeat 2 52 0 392 169 0 16 chr1 24210700 24210761 -218453592 + Tigger2 DNA MER2_type 2647 2718 0 780 149 0 25 chr1 24210832 24210953 -218453400 + AluJo/FLAM SINE Alu 1 118 -184 2023 142 7 0 chr1 24210953 24211255 -218453098 - AluSg SINE Alu -6 304 1 639 293 35 13 chr1 24211677 24211906 -218452447 - MIR SINE MIR -27 235 2 1842 140 16 32 chr1 24212841 24213149 -218451204 - AluJb SINE Alu -9 303 1 667 245 55 19 chr1 24213311 24213417 -218450936 - MIR SINE MIR 0 262 161 2277 102 0 10 chr1 24213417 24213721 -218450632 - AluSq SINE Alu -12 301 1 667 245 55 19 chr1 24213721 24213833 -218450520 - MIR SINE MIR -101 161 37 2185 84 47 0 chr1 24213989 24214264 -218450089 - AluSc SINE Alu -21 288 1 436 217 203 7 chr1 24214321 24214464 -218449889 + MIR SINE MIR 22 192 -70 1826 139 14 11 chr1 24214472 24214753 -218449600 + AluJb SINE Alu 9 290 -22 2422 60 0 0 chr1 24214764 24215077 -218449276 + AluY SINE Alu 1 313 0 2303 111 0 3 chr1 24215107 24215414 -218448939 + AluSx SINE Alu 1 306 -6 801 110 0 52 chr1 24215450 24215586 -218448767 + FLAM_C SINE Alu 15 143 0 216 286 82 71 chr1 24216053 24216151 -218448202 - MIR SINE MIR -58 150 52 1579 190 18 3 chr1 24216771 24217055 -218447298 + AluJb SINE Alu 21 308 -4 23 0 0 0 chr1 24217055 24217078 -218447275 + AT_rich Low_complexity Low_complexity 1 23 0 2407 65 38 0 chr1 24217641 24217933 -218446420 + AluSc SINE Alu 1 303 -6 2234 112 3 3 chr1 24218989 24219292 -218445061 - AluSx SINE Alu -9 303 1 454 286 201 5 chr1 24219470 24219669 -218444684 + MIR SINE MIR 20 257 -5 2253 115 3 0 chr1 24219671 24219975 -218444378 + AluSg SINE Alu 1 305 -5 2198 114 10 0 chr1 24220480 24220779 -218443574 - AluSq SINE Alu -11 302 1 261 0 0 0 chr1 24221611 24221640 -218442713 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 815 182 134 27 chr1 24221673 24221860 -218442493 + AluSg/x SINE Alu 74 280 -32 1744 197 39 6 chr1 24221870 24222226 -218442127 + L1ME1 LINE L1 5733 6100 -66 1368 158 19 46 chr1 24222226 24222485 -218441868 + AluJo SINE Alu 29 280 -32 2273 58 0 41 chr1 24222485 24222776 -218441577 - AluY SINE Alu -6 305 27 335 238 94 99 chr1 24223360 24223541 -218440812 + MIR SINE MIR 54 233 -29 903 122 115 27 chr1 24223612 24223760 -218440593 + AluSq SINE Alu 131 291 -22 2376 86 10 0 chr1 24224047 24224349 -218440004 + AluSx SINE Alu 1 305 -7 286 275 104 44 chr1 24224666 24224848 -218439505 + MARNA DNA Mariner 107 299 -287 1742 171 10 3 chr1 24225000 24225293 -218439060 + AluJb SINE Alu 1 295 -17 1631 146 3 97 chr1 24225343 24225458 -218438895 + AluJo SINE Alu 1 125 -187 2110 114 0 0 chr1 24225458 24225768 -218438585 + AluSx SINE Alu 2 311 0 1631 146 3 97 chr1 24225768 24225972 -218438381 + AluJo SINE Alu 125 291 -21 2294 110 7 3 chr1 24226317 24226626 -218437727 + AluSg SINE Alu 1 310 0 1725 120 112 8 chr1 24226635 24226902 -218437451 + AluSg SINE Alu 3 297 -13 2486 58 0 3 chr1 24227007 24227300 -218437053 + AluY SINE Alu 1 292 -19 389 224 168 50 chr1 24227387 24227566 -218436787 + MIR SINE MIR 57 256 -6 255 278 0 14 chr1 24227568 24227640 -218436713 + MIR SINE MIR 177 247 -15 2344 102 0 3 chr1 24227652 24227957 -218436396 + AluSq SINE Alu 2 305 -8 671 329 108 9 chr1 24229059 24229403 -218434950 - L2 LINE L2 -15 3298 2921 657 147 54 23 chr1 24229435 24229564 -218434789 + FLAM_C SINE Alu 10 142 -1 2269 91 10 16 chr1 24229690 24229998 -218434355 + AluSg SINE Alu 1 306 -4 1087 164 45 81 chr1 24230058 24230368 -218433985 + L1ME3A LINE L1 5867 6165 -5 1752 62 0 0 chr1 24230386 24230597 -218433756 - AluY SINE Alu -11 300 90 665 168 0 0 chr1 24230652 24230759 -218433594 + U6 snRNA snRNA 1 107 0 2334 97 7 0 chr1 24230908 24231207 -218433146 + AluSg SINE Alu 1 301 -9 1711 153 19 39 chr1 24231216 24231524 -218432829 + AluJo SINE Alu 1 302 -10 377 212 186 0 chr1 24231769 24231882 -218432471 + MIR SINE MIR 45 178 -84 459 130 0 0 chr1 24231905 24231974 -218432379 + U6 snRNA snRNA 5 73 -34 2438 59 10 0 chr1 24232162 24232452 -218431901 + AluY SINE Alu 1 293 -18 646 157 0 0 chr1 24233204 24233317 -218431036 + L1ME1 LINE L1 6063 6161 -5 1380 195 0 16 chr1 24233338 24233595 -218430758 + AluJb SINE Alu 1 253 -59 182 36 0 36 chr1 24233610 24233638 -218430715 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 210 71 0 0 chr1 24233997 24234025 -218430328 + (A)n Simple_repeat Simple_repeat 1 28 0 214 307 0 27 chr1 24234093 24234168 -218430185 - MIR SINE MIR -102 106 34 413 287 43 55 chr1 24234169 24234321 -218430032 + MIR SINE MIR 3 151 -111 2359 82 10 7 chr1 24234321 24234626 -218429727 + AluSx SINE Alu 1 306 -6 413 287 43 55 chr1 24234626 24234731 -218429622 + MIR SINE MIR 151 256 -6 31 58 0 0 chr1 24235826 24235878 -218428475 + GC_rich Low_complexity Low_complexity 1 52 0 27 49 0 0 chr1 24235891 24235932 -218428421 + GC_rich Low_complexity Low_complexity 1 41 0 49 80 0 0 chr1 24236047 24236159 -218428194 + GC_rich Low_complexity Low_complexity 1 112 0 22 99 0 0 chr1 24236238 24236309 -218428044 + GC_rich Low_complexity Low_complexity 1 71 0 219 271 8 34 chr1 24236624 24236742 -218427611 + C-rich Low_complexity Low_complexity 5 119 0 1931 108 61 4 chr1 24237031 24237308 -218427045 + AluJb SINE Alu 7 299 -13 285 221 35 23 chr1 24237318 24237404 -218426949 + MIR SINE MIR 163 249 -13 417 264 18 42 chr1 24237427 24237594 -218426759 + MIR3 SINE MIR 17 179 -29 261 0 0 0 chr1 24237920 24237949 -218426404 + (CA)n Simple_repeat Simple_repeat 2 30 0 284 294 56 16 chr1 24238246 24238372 -218425981 + MIR SINE MIR 105 235 -27 2369 109 0 0 chr1 24238402 24238715 -218425638 - AluSq SINE Alu 0 313 1 1836 126 10 36 chr1 24238747 24239049 -218425304 + AluJb SINE Alu 1 294 -18 181 130 0 37 chr1 24239049 24239103 -218425250 + (TA)n Simple_repeat Simple_repeat 1 52 0 696 195 85 14 chr1 24239894 24240075 -218424278 + MIR SINE MIR 41 234 -28 1888 156 0 7 chr1 24240325 24240454 -218423899 + AluJo SINE Alu 1 129 -183 2100 133 0 3 chr1 24240454 24240763 -218423590 - AluSx SINE Alu -4 308 1 2202 90 38 0 chr1 24240772 24241061 -218423292 - AluSg SINE Alu -2 308 9 1888 156 0 7 chr1 24241061 24241228 -218423125 + AluJo SINE Alu 137 305 -7 202 222 0 0 chr1 24241245 24241290 -218423063 + T-rich Low_complexity Low_complexity 2 46 0 1914 163 3 10 chr1 24241292 24241605 -218422748 - AluSx SINE Alu -1 311 1 2526 143 71 69 chr1 24241954 24242473 -218421880 - MLT2B1 LTR ERVL 0 520 1 279 0 0 0 chr1 24242878 24242909 -218421444 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 182 333 0 0 chr1 24242910 24242976 -218421377 - MIR SINE MIR -7 255 190 259 273 39 0 chr1 24243042 24243119 -218421234 - MIR SINE MIR -110 152 73 236 278 89 22 chr1 24243207 24243297 -218421056 + MIR SINE MIR 69 164 -98 193 300 67 33 chr1 24243480 24243570 -218420783 + L2 LINE L2 3139 3231 -41 195 280 0 0 chr1 24243595 24243645 -218420708 - L2 LINE L2 -1 3271 3222 264 256 37 0 chr1 24243768 24243850 -218420503 - L2 LINE L2 -164 3108 3024 478 216 0 10 chr1 24243851 24243953 -218420400 - MIR SINE MIR -141 121 21 2334 99 0 10 chr1 24244011 24244313 -218420040 - AluSx SINE Alu -13 299 1 1997 138 0 32 chr1 24244827 24245138 -218419215 - AluJo SINE Alu -10 302 2 228 301 41 49 chr1 24245361 24245484 -218418869 + MIR SINE MIR 24 145 -117 21 36 0 0 chr1 24245649 24245677 -218418676 + GC_rich Low_complexity Low_complexity 1 28 0 323 277 72 0 chr1 24246103 24246186 -218418167 - MIR SINE MIR -88 174 86 491 356 64 9 chr1 24246218 24246437 -218417916 - MIR SINE MIR -24 238 8 213 299 60 0 chr1 24246461 24246528 -218417825 + L2 LINE L2 3218 3288 -25 187 336 9 36 chr1 24246597 24246707 -218417646 - L3 LINE CR1 -74 1503 1397 2165 127 7 0 chr1 24246736 24247027 -218417326 - AluSx SINE Alu -19 293 1 658 264 164 68 chr1 24247177 24247560 -218416793 + MLT1J1 LTR MaLR 14 433 -13 186 333 0 43 chr1 24247579 24247648 -218416705 + L2 LINE L2 3233 3298 -15 671 292 19 56 chr1 24247989 24248194 -218416159 + MIR SINE MIR 3 197 -65 2360 110 3 0 chr1 24248194 24248503 -218415850 - AluSx SINE Alu -2 310 1 671 292 19 56 chr1 24248503 24248564 -218415789 + MIR SINE MIR 197 259 -3 2186 86 0 21 chr1 24248715 24248995 -218415358 - AluSg SINE Alu 0 310 37 293 301 0 78 chr1 24249157 24249271 -218415082 + MIR SINE MIR 94 193 -69 2511 96 3 0 chr1 24249271 24249583 -218414770 + AluSp SINE Alu 1 313 0 293 301 0 78 chr1 24249583 24249634 -218414719 + MIR SINE MIR 193 246 -16 1284 192 120 8 chr1 24249744 24250010 -218414343 + AluSg SINE Alu 1 296 -14 2437 84 0 13 chr1 24250011 24250320 -218414033 + AluY SINE Alu 2 306 -5 583 298 20 83 chr1 24250547 24250692 -218413661 - MIR SINE MIR -15 247 123 2199 129 0 16 chr1 24250692 24251009 -218413344 + AluSx SINE Alu 1 312 0 583 298 20 83 chr1 24251009 24251115 -218413238 - MIR SINE MIR -139 123 12 289 323 25 43 chr1 24251401 24251444 -218412909 + L2 LINE L2 2625 2667 -647 2254 125 0 0 chr1 24251444 24251747 -218412606 - AluSx SINE Alu -9 303 1 289 323 25 43 chr1 24251747 24251864 -218412489 + L2 LINE L2 2667 2782 -532 197 62 0 31 chr1 24252418 24252450 -218411903 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 1535 149 0 0 chr1 24252475 24252696 -218411657 - AluJb SINE Alu -91 221 1 285 250 36 36 chr1 24252999 24253063 -218411290 + MIR3 SINE MIR 89 155 -53 2272 106 3 0 chr1 24253063 24253355 -218410998 + AluSx SINE Alu 1 293 -19 285 250 36 36 chr1 24253355 24253402 -218410951 + MIR3 SINE MIR 154 200 -8 348 242 32 0 chr1 24253443 24253538 -218410815 + L2 LINE L2 3193 3290 -23 459 335 94 38 chr1 24253547 24253813 -218410540 + L3 LINE CR1 987 1267 -310 272 296 34 0 chr1 24253929 24254017 -218410336 + MIR SINE MIR 55 145 -63 375 92 0 0 chr1 24254045 24254106 -218410247 - Alu SINE Alu -254 48 1 2287 108 10 3 chr1 24254175 24254482 -218409871 + AluSq SINE Alu 1 309 -4 2246 93 0 27 chr1 24254557 24254858 -218409495 + AluSc SINE Alu 5 297 -12 1940 171 0 3 chr1 24254975 24255280 -218409073 - AluJb SINE Alu -5 307 4 473 255 0 0 chr1 24255280 24255386 -218408967 + MIR SINE MIR 61 166 -96 185 290 32 16 chr1 24255432 24255494 -218408859 + MIR3 SINE MIR 146 208 0 330 26 0 0 chr1 24255935 24255974 -218408379 + (TG)n Simple_repeat Simple_repeat 2 40 0 268 219 68 0 chr1 24256062 24256135 -218408218 - MIR SINE MIR -85 177 100 768 252 106 18 chr1 24256248 24256474 -218407879 + MIR SINE MIR 16 261 -1 1077 168 0 0 chr1 24256695 24256868 -218407485 + FAM SINE Alu 1 173 -2 2300 88 17 0 chr1 24257122 24257418 -218406935 - AluSp SINE Alu -12 301 1 2232 122 0 0 chr1 24257446 24257741 -218406612 - AluJb SINE Alu -17 295 1 1622 147 122 4 chr1 24258159 24258438 -218405915 - AluJo SINE Alu 0 312 1 211 229 49 0 chr1 24258623 24258684 -218405669 - MIR SINE MIR -107 155 92 1768 157 64 7 chr1 24258684 24258965 -218405388 + AluJb SINE Alu 1 297 -15 2438 100 0 0 chr1 24258966 24259277 -218405076 + AluSq SINE Alu 1 311 -2 205 250 18 98 chr1 24259285 24259359 -218404994 - MIR SINE MIR -157 105 41 2036 153 0 3 chr1 24259359 24259654 -218404699 - AluJb SINE Alu -9 303 10 205 250 18 98 chr1 24259654 24259691 -218404662 - MIR SINE MIR -221 41 3 2365 97 10 0 chr1 24260508 24260808 -218403545 + AluSc SINE Alu 1 303 -6 21 0 0 0 chr1 24260955 24260976 -218403377 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr1 24262354 24262380 -218401973 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2280 103 7 0 chr1 24263393 24263684 -218400669 - AluSg SINE Alu -17 293 1 251 246 0 0 chr1 24263693 24263754 -218400599 + MER21B LTR ERV1 407 467 -396 1777 147 3 43 chr1 24263775 24264075 -218400278 - AluJo SINE Alu -10 302 15 2297 101 10 0 chr1 24264111 24264409 -218399944 + AluSp SINE Alu 1 301 -12 330 294 121 16 chr1 24264572 24264764 -218399589 - MIR SINE MIR -1 261 51 2225 101 30 0 chr1 24265397 24265693 -218398660 + AluSx SINE Alu 1 305 -7 782 150 8 15 chr1 24265703 24265836 -218398517 + FLAM_C SINE Alu 1 132 -1 646 135 0 0 chr1 24265937 24266033 -218398320 + FLAM_A SINE Alu 37 132 -10 2395 50 40 24 chr1 24266038 24266336 -218398017 + AluY SINE Alu 1 303 -8 677 304 70 38 chr1 24266337 24266807 -218397546 + L1ME3 LINE L1 5509 5993 -169 1474 90 147 19 chr1 24266864 24267075 -218397278 - AluSg SINE Alu -72 238 1 1846 161 0 7 chr1 24267075 24267354 -218396999 - AluJo SINE Alu -25 287 11 1036 178 43 0 chr1 24267373 24267558 -218396795 - AluJo SINE Alu 0 312 120 2106 142 0 16 chr1 24267641 24267952 -218396401 - AluSx SINE Alu -4 308 3 429 272 19 0 chr1 24268056 24268159 -218396194 + MIR SINE MIR 41 145 -63 323 238 175 48 chr1 24268277 24268466 -218395887 + MIR SINE MIR 8 220 -42 685 175 0 0 chr1 24268478 24268622 -218395731 - FLAM_C SINE Alu 0 144 1 335 240 48 40 chr1 24268993 24269118 -218395235 + MLT1K LTR MaLR 155 280 -308 1896 158 3 19 chr1 24269490 24269801 -218394552 - AluJb SINE Alu -6 306 1 359 272 91 10 chr1 24269802 24270001 -218394352 + MIR SINE MIR 38 252 -10 2049 131 13 19 chr1 24270003 24270341 -218394012 - AluSx SINE Alu 0 312 1 270 210 86 12 chr1 24270762 24270843 -218393510 + MIR SINE MIR 117 203 -59 2093 94 56 0 chr1 24270860 24271147 -218393206 - AluSx SINE Alu -9 303 1 1925 172 10 0 chr1 24271326 24271623 -218392730 + AluJo SINE Alu 1 300 -12 639 263 1 7 chr1 24271636 24271811 -218392542 + L1ME LINE L1 5592 5766 -398 835 147 15 29 chr1 24271811 24271947 -218392406 + FLAM_C SINE Alu 1 134 -9 900 87 8 0 chr1 24271953 24272079 -218392274 + THE1B LTR MaLR 198 324 -40 2557 48 3 3 chr1 24272079 24272373 -218391980 - AluY SINE Alu -17 294 1 210 298 0 0 chr1 24272376 24272433 -218391920 + MIR SINE MIR 119 175 -87 206 191 24 0 chr1 24272442 24272484 -218391869 - MIR SINE MIR -94 114 72 1076 218 151 65 chr1 24272532 24272840 -218391513 + MLT1H LTR MaLR 80 437 -112 3234 116 10 4 chr1 24272840 24273347 -218391006 + L1PB1 LINE L1 5640 6149 -2 1076 218 151 65 chr1 24273347 24273469 -218390884 + MLT1H LTR MaLR 437 547 -2 2233 98 14 0 chr1 24273495 24273790 -218390563 - AluSq SINE Alu -14 299 1 436 282 78 95 chr1 24273867 24273994 -218390359 + L2 LINE L2 2560 2688 -584 2268 70 42 3 chr1 24273994 24274278 -218390075 - AluY SINE Alu -16 295 1 436 282 78 95 chr1 24274278 24274805 -218389548 + L2 LINE L2 2688 3226 -46 574 253 19 19 chr1 24274849 24275003 -218389350 + MIR3 SINE MIR 7 160 -48 287 300 56 67 chr1 24275003 24275065 -218389288 + MER5B DNA MER1_type 1 62 -116 2123 111 3 36 chr1 24275065 24275372 -218388981 + AluSx SINE Alu 1 297 -15 287 300 56 67 chr1 24275372 24275489 -218388864 + MER5B DNA MER1_type 62 178 0 2309 106 3 7 chr1 24275708 24276011 -218388342 - AluSx SINE Alu -10 302 1 1013 128 7 0 chr1 24276096 24276237 -218388116 + AluJo SINE Alu 1 142 -170 2363 112 3 0 chr1 24276238 24276550 -218387803 + AluSq SINE Alu 1 313 0 216 0 0 0 chr1 24276574 24276598 -218387755 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 456 241 43 9 chr1 24276637 24276753 -218387600 - MIR3 SINE MIR -42 166 47 758 159 185 51 chr1 24276758 24276939 -218387414 + MER33 DNA MER1_type 12 167 -2418 2272 104 7 13 chr1 24276939 24277248 -218387105 - AluSx SINE Alu -5 307 1 758 159 185 51 chr1 24277248 24277342 -218387011 + MER33 DNA MER1_type 167 324 0 818 245 30 47 chr1 24277505 24277738 -218386615 - MIR SINE MIR 0 262 34 211 219 0 0 chr1 24277811 24277852 -218386501 - L2 LINE L2 -7 3265 3225 285 246 263 9 chr1 24277950 24278029 -218386324 - MER5A DNA MER1_type -6 183 125 2039 155 20 0 chr1 24278029 24278326 -218386027 - AluSx SINE Alu -9 303 1 285 246 263 9 chr1 24278326 24278360 -218385993 - MER5A DNA MER1_type -64 125 41 555 211 112 6 chr1 24278424 24278585 -218385768 - MIR3 SINE MIR -15 193 16 398 269 85 14 chr1 24279065 24279206 -218385147 + MIR SINE MIR 31 181 -81 459 0 0 0 chr1 24279558 24279609 -218384744 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1674 182 10 19 chr1 24279609 24279911 -218384442 - AluJo SINE Alu -13 299 1 2226 124 3 3 chr1 24280775 24281074 -218383279 - AluSx SINE Alu -13 299 1 1955 102 11 4 chr1 24281189 24281454 -218382899 + AluSc SINE Alu 39 305 -4 700 197 8 0 chr1 24281674 24281806 -218382547 - FLAM_C SINE Alu 0 133 1 267 253 226 32 chr1 24281832 24282018 -218382335 + L2 LINE L2 3020 3241 -31 1944 157 0 0 chr1 24282093 24282373 -218381980 + AluJb SINE Alu 1 280 -32 216 0 0 0 chr1 24282374 24282398 -218381955 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 424 200 36 36 chr1 24282412 24282522 -218381831 + L2 LINE L2 2742 2851 -463 288 270 127 66 chr1 24282507 24282766 -218381587 + L2 LINE L2 2998 3272 -41 * 508 271 133 26 chr1 24282794 24283083 -218381270 - L2 LINE L2 -1048 2266 1934 2088 153 0 0 chr1 24283083 24283390 -218380963 + AluJb SINE Alu 1 307 -5 508 271 133 26 chr1 24283390 24283439 -218380914 - L2 LINE L2 -1380 1934 1892 207 0 0 0 chr1 24284219 24284242 -218380111 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 250 350 0 0 chr1 24284356 24284496 -218379857 + (CA)n Simple_repeat Simple_repeat 1 140 0 318 264 11 0 chr1 24285045 24285136 -218379217 - LTR33 LTR ERVL -429 92 1 356 216 60 43 chr1 24285802 24285918 -218378435 + MIR SINE MIR 36 153 -55 2215 129 0 3 chr1 24285973 24286283 -218378070 + AluSg SINE Alu 1 309 -1 1613 141 15 41 chr1 24286303 24286573 -218377780 + AluJo SINE Alu 50 312 0 281 287 0 28 chr1 24286808 24286916 -218377437 + MIR SINE MIR 158 262 0 221 263 51 68 chr1 24287333 24287451 -218376902 + MIR SINE MIR 31 146 -62 2263 128 0 0 chr1 24287642 24287946 -218376407 + AluSx SINE Alu 1 304 -8 1902 153 23 10 chr1 24287947 24288255 -218376098 + AluJb SINE Alu 1 312 0 956 163 36 50 chr1 24288304 24288525 -218375828 - MER20 DNA MER1_type 0 219 2 1974 132 30 7 chr1 24288743 24289047 -218375306 - AluJb SINE Alu -1 311 1 2257 77 0 95 chr1 24289394 24289730 -218374623 + AluSq SINE Alu 1 304 -9 253 315 67 0 chr1 24291606 24291695 -218372658 - MIR SINE MIR -118 144 50 189 277 32 64 chr1 24292099 24292193 -218372160 - L2 LINE L2 -2 3270 3180 * 536 281 68 11 chr1 24292174 24292372 -218371981 + MIR SINE MIR 8 215 -47 396 0 0 0 chr1 24292631 24292675 -218371678 + (ATG)n Simple_repeat Simple_repeat 3 46 0 544 214 10 0 chr1 24293063 24293161 -218371192 - MER81 DNA DNA -14 100 2 479 253 136 40 chr1 24293771 24293969 -218370384 + MIR SINE MIR 40 256 -6 2385 59 3 3 chr1 24294017 24294306 -218370047 + AluY SINE Alu 7 295 -16 32 75 0 0 chr1 24294316 24294383 -218369970 + AT_rich Low_complexity Low_complexity 1 67 0 2425 78 3 0 chr1 24294387 24294680 -218369673 + AluSq SINE Alu 1 294 -19 2016 115 35 10 chr1 24295412 24295700 -218368653 + AluSg SINE Alu 1 295 -15 686 155 0 0 chr1 24296321 24296424 -218367929 - MER46A DNA MER2_type -89 147 45 2139 135 35 11 chr1 24297325 24297696 -218366657 + L1MB2 LINE L1 5789 6168 -3 1208 84 0 7 chr1 24297738 24297892 -218366461 - AluSx SINE Alu -159 153 1 1748 154 85 3 chr1 24297965 24298283 -218366070 - MER7A DNA MER2_type -4 342 1 965 200 0 0 chr1 24298320 24298480 -218365873 - FRAM SINE Alu -6 160 1 427 288 26 0 chr1 24298482 24298635 -218365718 - L1ME LINE L1 -366 5755 5599 781 208 56 19 chr1 24298649 24298865 -218365488 - HAL1 LINE L1 -6 2501 2278 252 0 0 0 chr1 24298866 24298894 -218365459 + (TA)n Simple_repeat Simple_repeat 1 28 0 2376 49 3 3 chr1 24298895 24299183 -218365170 - AluY SINE Alu -23 288 1 2115 146 0 0 chr1 24299365 24299674 -218364679 + AluJb SINE Alu 1 309 -3 213 242 32 16 chr1 24299764 24299826 -218364527 + L3 LINE CR1 1165 1227 -350 222 296 42 0 chr1 24299831 24299902 -218364451 - MIR SINE MIR -158 104 31 279 329 154 6 chr1 24300078 24300403 -218363950 - L2 LINE L2 -1000 2314 1942 13508 17 2 2 chr1 24304769 24306477 -218357876 - L1P1 LINE L1 -608 5547 3839 1016 81 22 7 chr1 24306477 24306613 -218357740 - AluSq/x SINE Alu -175 138 1 1800 232 45 13 chr1 24306613 24307164 -218357189 - L1M4 LINE L1 -3173 2973 2405 319 248 110 28 chr1 24307200 24307345 -218357008 + L1ME2 LINE L1 3325 3481 -2665 1000 138 0 0 chr1 24307445 24307583 -218356770 - AluSq/x SINE Alu -174 138 1 1578 214 35 38 chr1 24307585 24308038 -218356315 + L1ME2 LINE L1 5578 6029 -135 237 180 20 0 chr1 24308089 24308139 -218356214 + LTR66 LTR ERVL 395 445 -165 341 183 0 0 chr1 24308139 24308210 -218356143 + L1ME2 LINE L1 6093 6163 -1 1484 177 51 4 chr1 24308244 24308523 -218355830 + AluJo SINE Alu 17 307 0 2753 107 90 2 chr1 24308809 24309221 -218355132 - MER83 LTR ERV1 0 448 1 2018 118 10 3 chr1 24309230 24309519 -218354834 + MSTC LTR MaLR 138 428 0 279 219 0 37 chr1 24309684 24309766 -218354587 + L1MC5 LINE L1 7072 7150 -811 1949 155 3 3 chr1 24309779 24310069 -218354284 + AluJb SINE Alu 1 290 -22 235 118 0 0 chr1 24310075 24310109 -218354244 + L1MC4 LINE L1 7210 7243 -799 865 207 40 55 chr1 24310160 24310471 -218353882 + L1MC5 LINE L1 7269 7415 -393 1825 236 86 6 chr1 24310471 24310950 -218353403 + LTR40a LTR ERVL 1 517 -2 329 217 0 0 chr1 24310964 24311024 -218353329 + HERVL40 LTR ERVL 17 76 -5454 1919 175 37 52 chr1 24311055 24311513 -218352840 + MLT1D LTR MaLR 21 471 -34 31 0 0 0 chr1 24311733 24311764 -218352589 + AT_rich Low_complexity Low_complexity 1 31 0 700 185 0 0 chr1 24311767 24311886 -218352467 - FLAM_C SINE Alu -14 119 1 2228 58 0 18 chr1 24312615 24312891 -218351462 - AluSq SINE Alu -16 297 27 703 253 164 68 chr1 24313105 24313488 -218350865 + MLT1J1 LTR MaLR 14 433 -13 451 284 26 0 chr1 24313917 24314033 -218350320 + MIR SINE MIR 3 121 -141 2374 97 0 0 chr1 24314148 24314446 -218349907 - AluSx SINE Alu -14 298 1 2140 87 0 22 chr1 24314663 24314939 -218349414 - AluSg SINE Alu -4 306 37 257 295 0 83 chr1 24315111 24315215 -218349138 + MIR SINE MIR 104 192 -70 2481 96 3 0 chr1 24315215 24315527 -218348826 + AluSp SINE Alu 1 313 0 257 295 0 83 chr1 24315527 24315578 -218348775 + MIR SINE MIR 192 246 -16 1208 199 120 8 chr1 24315688 24315954 -218348399 + AluSg SINE Alu 1 296 -14 2409 81 0 13 chr1 24315955 24316262 -218348091 + AluY SINE Alu 2 304 -7 421 247 21 10 chr1 24316489 24316634 -218347719 - MIR SINE MIR -15 247 102 1998 125 10 17 chr1 24316634 24316929 -218347424 + AluSx SINE Alu 1 293 -19 646 157 0 0 chr1 24317681 24317794 -218346559 + L1ME1 LINE L1 6063 6161 -5 1380 195 0 16 chr1 24317815 24318072 -218346281 + AluJb SINE Alu 1 253 -59 182 36 0 36 chr1 24318087 24318115 -218346238 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 210 71 0 0 chr1 24318474 24318502 -218345851 + (A)n Simple_repeat Simple_repeat 1 28 0 214 307 0 27 chr1 24318570 24318645 -218345708 - MIR SINE MIR -102 106 34 357 231 54 75 chr1 24318646 24318793 -218345560 + MIR3 SINE MIR 3 146 -62 2004 125 13 10 chr1 24318798 24319103 -218345250 + AluSx SINE Alu 1 306 -6 953 158 19 0 chr1 24319231 24319389 -218344964 - AluSx SINE Alu -151 161 1 292 292 80 29 chr1 24319632 24319769 -218344584 - MIR SINE MIR -33 229 86 261 0 0 0 chr1 24319785 24319814 -218344539 + (CAA)n Simple_repeat Simple_repeat 2 30 0 504 269 86 25 chr1 24319835 24320032 -218344321 - MIR SINE MIR -26 236 28 188 272 105 70 chr1 24320043 24320081 -218344272 + MIR SINE MIR 112 147 -115 2117 144 0 0 chr1 24320081 24320373 -218343980 + AluJb SINE Alu 1 292 -20 188 272 105 70 chr1 24320373 24320448 -218343905 + MIR SINE MIR 147 229 -33 1398 163 31 56 chr1 24320994 24321314 -218343039 + AluJo SINE Alu 1 312 0 379 265 175 5 chr1 24321561 24321750 -218342603 + MIR SINE MIR 29 249 -13 904 140 53 13 chr1 24322013 24322163 -218342190 + AluJb SINE Alu 136 291 -21 267 308 0 0 chr1 24322207 24322272 -218342081 - MIR SINE MIR -62 146 82 1878 81 116 8 chr1 24322444 24322702 -218341651 + AluSg SINE Alu 1 286 -24 21 0 0 0 chr1 24322703 24322724 -218341629 + AT_rich Low_complexity Low_complexity 1 21 0 422 252 170 19 chr1 24322741 24322947 -218341406 - MIR SINE MIR -16 246 10 2479 48 0 3 chr1 24323010 24323305 -218341048 - AluY SINE Alu -17 294 1 234 0 0 0 chr1 24323819 24323845 -218340508 + (T)n Simple_repeat Simple_repeat 1 26 0 1449 186 13 42 chr1 24324109 24324416 -218339937 + AluSx SINE Alu 4 301 -11 3173 139 65 57 chr1 24324916 24325118 -218339235 - L1MB7 LINE L1 -213 5971 5772 2079 126 3 14 chr1 24325118 24325411 -218338942 + AluSx SINE Alu 1 290 -22 3173 139 65 57 chr1 24325411 24325739 -218338614 - L1MB7 LINE L1 -412 5772 5430 2248 119 0 0 chr1 24325739 24326033 -218338320 - AluSq SINE Alu -19 294 1 3173 139 65 57 chr1 24326033 24326274 -218338079 - L1MB7 LINE L1 -754 5430 5192 2243 102 17 0 chr1 24326457 24326750 -218337603 - AluSx SINE Alu -14 298 1 329 299 91 13 chr1 24326754 24326908 -218337445 - L1MC3 LINE L1 -1567 6218 6053 * 1159 206 183 3 chr1 24326903 24327214 -218337139 - L1ME LINE L1 -405 5761 5395 3393 77 21 10 chr1 24327640 24328120 -218336233 + L1MA1 LINE L1 5660 6144 -158 2421 77 0 0 chr1 24328126 24328413 -218335940 - AluSg1 SINE Alu -22 287 1 24 0 0 0 chr1 24328413 24328437 -218335916 + AT_rich Low_complexity Low_complexity 1 24 0 270 270 20 60 chr1 24328542 24328642 -218335711 + L2 LINE L2 3173 3268 -45 1368 49 71 5 chr1 24329246 24329430 -218334923 - MLT2A2 LTR ERVL 0 453 258 307 197 16 0 chr1 24329531 24329592 -218334761 + MER21B LTR ERV1 369 430 -433 260 309 12 0 chr1 24329633 24329717 -218334636 + MER21B LTR ERV1 25 109 -754 1535 185 130 5 chr1 24329718 24330102 -218334251 + MER21B LTR ERV1 431 862 -1 398 179 0 0 chr1 24330108 24330175 -218334178 - LTR40a LTR ERVL -449 70 4 912 192 53 107 chr1 24330177 24330458 -218333895 - HERVL40 LTR ERVL -3 5527 5262 731 302 71 44 chr1 24330418 24330828 -218333525 - MER89-int LTR ERV1 -298 6503 6083 * 2275 81 32 16 chr1 24330983 24331291 -218333062 + AluSq SINE Alu 1 313 0 1787 237 89 18 chr1 24331436 24331950 -218332403 - MER92C LTR ERV1 -3 551 1 827 329 19 24 chr1 24332238 24332649 -218331704 - MER92C-int LTR ERV1 -248 6553 6145 324 189 54 0 chr1 24332658 24332732 -218331621 - HERVL40 LTR ERVL -1284 4246 4169 1153 201 73 7 chr1 24332835 24333109 -218331244 - L1ME LINE L1 -1239 4907 4616 520 236 175 13 chr1 24333117 24333345 -218331008 + L1M4 LINE L1 2562 2829 -3317 24 0 0 0 chr1 24333522 24333546 -218330807 + AT_rich Low_complexity Low_complexity 1 24 0 2001 163 46 107 chr1 24333925 24334422 -218329931 + MLT1C LTR MaLR 1 467 0 2163 150 18 14 chr1 24334422 24334897 -218329456 + MLT1C-int LTR MaLR 1 590 -781 1353 96 6 0 chr1 24334997 24335175 -218329178 - AluY SINE Alu -132 179 1 486 166 93 58 chr1 24335196 24335245 -218329108 - L1ME LINE L1 -3652 2494 2448 895 125 0 0 chr1 24335245 24335414 -218328939 - FLAM_C SINE Alu 0 169 1 486 166 93 58 chr1 24335414 24335502 -218328851 - L1ME LINE L1 -3698 2448 2351 2716 39 0 0 chr1 24336188 24336498 -218327855 + AluYa8 SINE Alu 1 310 0 366 296 64 61 chr1 24336678 24337151 -218327202 - L2 LINE L2 -89 3183 2711 599 295 0 30 chr1 24337538 24337738 -218326615 + MIR SINE MIR 48 241 -21 339 260 77 0 chr1 24337801 24337905 -218326448 + L2 LINE L2 3136 3247 -25 339 25 0 0 chr1 24337910 24337950 -218326403 + (TGGA)n Simple_repeat Simple_repeat 2 41 0 2110 133 3 3 chr1 24338368 24338677 -218325676 - AluSx SINE Alu -3 309 1 276 100 0 0 chr1 24338679 24338719 -218325634 + (TG)n Simple_repeat Simple_repeat 1 40 0 386 241 131 7 chr1 24338720 24338857 -218325496 - MIR SINE MIR -35 227 74 249 296 98 23 chr1 24339091 24339223 -218325130 - MIR3 SINE MIR -9 199 58 * 598 256 134 0 chr1 24339210 24339382 -218324971 + MIR SINE MIR 20 214 -48 1823 171 0 3 chr1 24339392 24339694 -218324659 - AluSx SINE Alu 0 301 1 4725 104 41 38 chr1 24339737 24340885 -218323468 - MER11A LTR ERVK 0 1266 1 1743 166 15 0 chr1 24340888 24341159 -218323194 - AluJo SINE Alu -36 276 2 185 79 0 53 chr1 24341247 24341285 -218323068 - MIR SINE MIR -153 55 20 2558 52 0 7 chr1 24342039 24342345 -218322008 + AluY SINE Alu 1 304 -7 508 194 136 0 chr1 24342372 24342475 -218321878 + AluJo/FLAM SINE Alu 1 117 -185 1752 117 8 0 chr1 24342475 24342723 -218321630 + AluSq SINE Alu 36 285 -28 5881 91 42 74 chr1 24342729 24343317 -218321036 - L1MA3 LINE L1 -79 6226 5682 2313 94 3 3 chr1 24343317 24343625 -218320728 - AluSc SINE Alu -1 308 1 5881 91 42 74 chr1 24343625 24344041 -218320312 - L1MA3 LINE L1 -623 5682 5254 670 119 50 0 chr1 24344048 24344149 -218320204 + MLT1D LTR MaLR 400 505 0 405 251 27 9 chr1 24344159 24344285 -218320068 - MER31-int LTR ERV1 -474 5789 4108 2070 114 28 0 chr1 24344292 24344581 -218319772 + AluSx SINE Alu 1 297 -15 458 62 16 0 chr1 24344730 24344794 -218319559 - Alu SINE Alu -252 66 2 363 127 0 16 chr1 24344805 24344868 -218319485 + MER69 DNA AcHobo 2462 2523 -3 345 292 71 0 chr1 24344913 24345067 -218319286 + MIR SINE MIR 97 261 -1 1588 169 3 91 chr1 24345236 24345567 -218318786 + AluSq SINE Alu 2 303 -10 267 31 0 0 chr1 24345729 24345761 -218318592 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 940 170 181 6 chr1 24345764 24345935 -218318418 - AluSg/x SINE Alu -25 284 84 768 101 13 128 chr1 24346126 24346236 -218318117 + AluJo/FLAM SINE Alu 1 91 -211 2500 71 0 3 chr1 24346236 24346544 -218317809 - AluY SINE Alu -3 308 2 768 101 13 128 chr1 24346544 24346582 -218317771 + AluJo/FLAM SINE Alu 91 132 -170 468 228 0 0 chr1 24346582 24346674 -218317679 + AluJb SINE Alu 208 299 -13 214 203 228 13 chr1 24346711 24346790 -218317563 + MIR3 SINE MIR 101 196 -12 425 233 163 0 chr1 24347262 24347391 -218316962 - MIR SINE MIR 0 262 113 36 23 0 0 chr1 24347397 24347440 -218316913 + AT_rich Low_complexity Low_complexity 1 43 0 666 92 0 0 chr1 24347442 24347529 -218316824 - AluSc SINE Alu -91 218 132 2487 65 0 16 chr1 24347529 24347835 -218316518 - AluY SINE Alu -10 301 1 1898 133 0 62 chr1 24347843 24348152 -218316201 - AluJb SINE Alu -22 290 1 320 284 25 0 chr1 24348157 24348223 -218316130 - MIR SINE MIR -174 88 18 2270 120 3 0 chr1 24348223 24348524 -218315829 - AluSx SINE Alu -10 302 1 320 284 25 0 chr1 24348524 24348538 -218315815 - MIR SINE MIR -244 18 6 536 252 9 0 chr1 24348570 24348685 -218315668 - MIR SINE MIR -93 169 54 7090 66 22 19 chr1 24348700 24350348 -218314005 - SVA Other Other -686 1379 1 231 36 0 0 chr1 24350349 24350377 -218313976 + (GA)n Simple_repeat Simple_repeat 1 28 0 2170 132 0 3 chr1 24351071 24351375 -218312978 - AluSx SINE Alu -7 305 3 25 0 0 0 chr1 24351752 24351777 -218312576 + AT_rich Low_complexity Low_complexity 1 25 0 1539 147 0 0 chr1 24355591 24355815 -218308538 - AluSg/x SINE Alu -18 294 71 465 307 84 17 chr1 24355851 24356030 -218308323 - MIR SINE MIR -57 205 15 1906 155 3 10 chr1 24356054 24356351 -218308002 + AluJo SINE Alu 1 295 -17 2236 105 3 3 chr1 24356520 24356835 -218307518 - AluSq SINE Alu 0 315 1 386 220 35 98 chr1 24357156 24357272 -218307081 - MER103 DNA DNA -3 163 41 1848 169 0 45 chr1 24357272 24357409 -218306944 + AluJb SINE Alu 1 143 -169 2434 80 0 10 chr1 24357409 24357721 -218306632 + AluY SINE Alu 1 309 -2 2202 118 0 25 chr1 24357729 24358016 -218306337 + AluSx SINE Alu 1 281 -31 216 0 0 0 chr1 24358016 24358040 -218306313 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2202 118 0 25 chr1 24358040 24358066 -218306287 + AluSx SINE Alu 281 306 -6 1848 169 0 45 chr1 24358066 24358233 -218306120 + AluJb SINE Alu 150 300 -12 386 220 35 98 chr1 24358233 24358289 -218306064 - MER103 DNA DNA -125 41 2 261 280 130 30 chr1 24360012 24360112 -218304241 + L2 LINE L2 3151 3260 -12 27 0 0 0 chr1 24361241 24361268 -218303085 + GC_rich Low_complexity Low_complexity 1 27 0 588 107 0 0 chr1 24362552 24362636 -218301717 + HY4 scRNA scRNA 1 84 -9 375 262 213 6 chr1 24362700 24362883 -218301470 + MIR SINE MIR 2 222 -40 22 0 0 0 chr1 24364050 24364072 -218300281 + AT_rich Low_complexity Low_complexity 1 22 0 475 250 69 66 chr1 24364284 24364604 -218299749 - L2 LINE L2 -122 3150 2830 225 200 254 27 chr1 24365096 24365170 -218299183 + MIR SINE MIR 5 61 -201 2163 106 7 0 chr1 24365170 24365454 -218298899 + AluSg SINE Alu 13 298 -12 225 200 254 27 chr1 24365454 24365489 -218298864 + MIR SINE MIR 61 139 -123 847 149 56 104 chr1 24365491 24365675 -218298678 + L1MB2 LINE L1 5934 6104 -67 1910 155 7 0 chr1 24365675 24365959 -218298394 + AluSx SINE Alu 1 286 -26 847 149 56 104 chr1 24365959 24366023 -218298330 + L1MB2 LINE L1 6104 6170 -1 213 250 170 20 chr1 24366027 24366127 -218298226 + MIR SINE MIR 146 260 -2 * 727 239 32 11 chr1 24366106 24366294 -218298059 - MIR SINE MIR 0 262 71 239 316 60 17 chr1 24366402 24366519 -218297834 - L2 LINE L2 -181 3091 2970 1957 93 102 12 chr1 24366652 24367021 -218297332 + LTR7 LTR ERV1 1 450 0 2561 77 0 0 chr1 24367263 24367574 -218296779 + AluY SINE Alu 1 311 0 1825 138 0 77 chr1 24367771 24367910 -218296443 + AluJo SINE Alu 5 153 -159 1868 136 47 4 chr1 24367910 24368189 -218296164 - AluSx SINE Alu -20 292 2 1825 138 0 77 chr1 24368189 24368375 -218295978 + AluJo SINE Alu 153 305 -7 1694 191 11 3 chr1 24368380 24368663 -218295690 + AluJo SINE Alu 5 289 -23 2248 92 6 44 chr1 24368949 24369265 -218295088 - AluSx SINE Alu -8 304 1 323 252 84 49 chr1 24369449 24369592 -218294761 - L2 LINE L2 -279 2993 2846 2284 81 0 58 chr1 24370061 24370370 -218293983 + AluSg SINE Alu 1 291 -19 1918 111 41 4 chr1 24370380 24370676 -218293677 + AluSx SINE Alu 1 306 0 327 264 122 37 chr1 24370808 24370862 -218293491 + MER5A DNA MER1_type 6 54 -135 2175 145 3 0 chr1 24370862 24371172 -218293181 + AluJo SINE Alu 1 311 -1 327 264 122 37 chr1 24371172 24371282 -218293071 + MER5A DNA MER1_type 54 186 -3 253 246 15 31 chr1 24371463 24371528 -218292825 + MIR SINE MIR 25 88 -120 2430 89 0 10 chr1 24371610 24371913 -218292440 + AluSq SINE Alu 1 300 -13 2088 137 0 3 chr1 24371924 24372238 -218292115 + AluSx SINE Alu 1 313 0 1859 136 0 4 chr1 24372463 24372721 -218291632 + AluSx SINE Alu 1 257 -55 210 26 77 0 chr1 24372726 24372765 -218291588 + A-rich Low_complexity Low_complexity 2 43 0 268 98 0 39 chr1 24373109 24373160 -218291193 - MADE1 DNA Mariner -31 49 1 699 196 15 15 chr1 24373380 24373513 -218290840 - FLAM_A SINE Alu 0 133 1 438 240 262 27 chr1 24373849 24374032 -218290321 + MIR SINE MIR 20 245 -17 695 200 77 82 chr1 24374249 24374349 -218290004 - MIR SINE MIR -11 251 151 2334 79 31 0 chr1 24374349 24374639 -218289714 - AluSp SINE Alu -14 299 1 695 200 77 82 chr1 24374639 24374733 -218289620 - MIR SINE MIR -111 151 58 844 253 39 0 chr1 24374785 24374963 -218289390 + MER91A DNA MER1_type 12 196 0 675 277 97 15 chr1 24374963 24375161 -218289192 - MIR SINE MIR -46 216 2 2603 58 0 3 chr1 24375297 24375607 -218288746 + AluY SINE Alu 1 309 -2 182 269 75 15 chr1 24375648 24375715 -218288638 + MIR SINE MIR 84 154 -108 196 258 275 25 chr1 24375781 24375901 -218288452 - MIR SINE MIR -76 186 37 1406 69 0 6 chr1 24376962 24377136 -218287217 - AluSg/x SINE Alu -9 303 131 180 216 0 0 chr1 24377197 24377234 -218287119 + L2 LINE L2 3019 3055 -217 328 258 67 0 chr1 24377263 24377352 -218287001 - MIR3 SINE MIR -11 197 103 274 267 81 0 chr1 24378234 24378320 -218286033 + MIR3 SINE MIR 109 201 -7 1802 127 0 99 chr1 24378507 24378831 -218285522 - AluJb SINE Alu -14 298 7 2291 110 0 7 chr1 24378849 24379024 -218285329 - AluSx SINE Alu -4 308 134 2379 85 0 0 chr1 24379024 24379318 -218285035 - AluY SINE Alu -16 295 2 2291 110 0 7 chr1 24379318 24379451 -218284902 - AluSx SINE Alu -178 134 2 2461 88 0 0 chr1 24380499 24380795 -218283558 - AluSc SINE Alu -13 296 1 1741 153 26 42 chr1 24380969 24381282 -218283071 - AluJb SINE Alu -4 308 1 2116 131 7 3 chr1 24381505 24381802 -218282551 + AluSq SINE Alu 1 298 -15 1158 110 6 12 chr1 24381802 24381966 -218282387 + AluSg/x SINE Alu 135 297 -13 651 218 0 98 chr1 24382040 24382214 -218282139 + MER63A DNA MER1_type 54 210 0 2167 119 6 38 chr1 24382486 24382805 -218281548 + AluSx SINE Alu 1 309 -3 317 229 143 19 chr1 24383187 24383292 -218281061 + L2 LINE L2 3155 3272 0 201 338 113 63 chr1 24383462 24383622 -218280731 + L2 LINE L2 3039 3214 -58 2021 95 46 7 chr1 24383622 24383907 -218280446 - AluSc SINE Alu -13 296 1 201 338 113 63 chr1 24383907 24383968 -218280385 + L2 LINE L2 3214 3271 -1 1734 164 4 0 chr1 24384214 24384488 -218279865 + AluJo SINE Alu 1 275 -37 457 111 28 0 chr1 24384509 24384581 -218279772 + AluSp/q SINE Alu 232 305 -8 757 199 192 8 chr1 24384588 24384737 -218279616 + L1MC4 LINE L1 7732 7852 -190 273 98 0 0 chr1 24384737 24384778 -218279575 + (CA)n Simple_repeat Simple_repeat 2 42 0 757 199 192 8 chr1 24384778 24384889 -218279464 + L1MC4 LINE L1 7852 8040 -2 2504 61 0 0 chr1 24384916 24385210 -218279143 - AluY SINE Alu -17 294 1 952 264 137 48 chr1 24385429 24385845 -218278508 - L2 LINE L2 -2 3311 2859 367 254 127 0 chr1 24385855 24385965 -218278388 + L2 LINE L2 2732 2855 -459 2350 95 3 13 chr1 24386032 24386337 -218278016 + AluSx SINE Alu 1 302 -10 213 218 55 36 chr1 24386584 24386639 -218277714 + MIR3 SINE MIR 130 185 -23 194 269 62 106 chr1 24386593 24386801 -218277552 - MIR3 SINE MIR -3 205 7 * 1012 248 67 17 chr1 24387414 24387713 -218276640 - MER21B LTR ERV1 -54 809 496 1190 98 0 23 chr1 24387718 24387891 -218276462 - AluSg/x SINE Alu -14 298 130 274 267 81 0 chr1 24389104 24389190 -218275163 + MIR3 SINE MIR 109 201 -7 1802 127 0 99 chr1 24389377 24389701 -218274652 - AluJb SINE Alu -14 298 7 2302 107 0 7 chr1 24389719 24389894 -218274459 - AluSx SINE Alu -4 308 134 2480 65 0 0 chr1 24389894 24390187 -218274166 - AluY SINE Alu -17 294 2 2302 107 0 7 chr1 24390187 24390320 -218274033 - AluSx SINE Alu -178 134 2 2468 85 0 0 chr1 24391370 24391665 -218272688 - AluSc SINE Alu -14 295 1 850 169 14 27 chr1 24391861 24392009 -218272344 - AluJb SINE Alu -22 290 145 2204 110 20 0 chr1 24392673 24392974 -218271379 + AluSq SINE Alu 1 307 -6 2203 104 7 0 chr1 24393078 24393375 -218270978 + AluSq SINE Alu 1 299 -14 246 75 0 57 chr1 24393384 24393437 -218270916 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 414 178 40 30 chr1 24393439 24393540 -218270813 - MER69A DNA AcHobo -43 134 33 636 96 0 184 chr1 24393541 24393677 -218270676 - FLAM_C SINE Alu -13 130 20 258 119 24 0 chr1 24393682 24393724 -218270629 - MER69A DNA AcHobo -133 44 2 717 158 96 6 chr1 24393734 24393911 -218270442 - Charlie4 DNA MER1_type -6 1955 1763 2419 93 0 3 chr1 24393916 24394227 -218270126 - AluY SINE Alu -1 310 1 2534 56 0 3 chr1 24394606 24394909 -218269444 - AluY SINE Alu -9 302 1 215 250 0 0 chr1 24394916 24394968 -218269385 - MIR3 SINE MIR -6 202 151 2745 106 2 54 chr1 24395057 24395501 -218268852 + MER1A DNA MER1_type 1 421 -108 2501 14 0 11 chr1 24395527 24395812 -218268541 + AluYa5 SINE Alu 1 282 -29 609 101 0 0 chr1 24395912 24395991 -218268362 - AluS SINE Alu -233 80 2 519 227 84 92 chr1 24396005 24396248 -218268105 - MER21B LTR ERV1 -398 465 176 776 170 0 15 chr1 24396248 24396383 -218267970 - FLAM_C SINE Alu 0 133 1 519 227 84 92 chr1 24396383 24396558 -218267795 - MER21B LTR ERV1 -687 176 1 4222 84 11 6 chr1 24396588 24397137 -218267216 + MER41A LTR ERV1 3 554 0 354 164 0 45 chr1 24397234 24397301 -218267052 - AluSc SINE Alu -10 289 226 691 185 7 7 chr1 24397660 24397795 -218266558 + AluJb SINE Alu 2 136 -176 1751 176 22 26 chr1 24398258 24398571 -218265782 - AluJb SINE Alu 0 312 1 2045 91 16 52 chr1 24398580 24398889 -218265464 - AluSp SINE Alu -15 298 1 2074 141 3 3 chr1 24398890 24399196 -218265157 - AluSg SINE Alu -4 306 1 293 163 51 35 chr1 24399618 24399734 -218264619 + (CA)n Simple_repeat Simple_repeat 1 114 -615 3466 106 27 12 chr1 24399734 24400252 -218264101 - MER1A DNA MER1_type 0 527 2 293 163 51 35 chr1 24400252 24400336 -218264017 + (CA)n Simple_repeat Simple_repeat 114 729 0 600 274 59 10 chr1 24400431 24400635 -218263718 + MIR SINE MIR 33 246 -16 310 315 252 0 chr1 24401230 24401373 -218262980 + MIR SINE MIR 82 260 -2 273 282 35 0 chr1 24401462 24401547 -218262806 - MER103 DNA DNA -75 91 4 360 272 52 23 chr1 24401626 24401764 -218262589 - MIR3 SINE MIR -68 140 11 2316 100 0 7 chr1 24402458 24402759 -218261594 + AluSx SINE Alu 1 299 -13 376 298 48 8 chr1 24403483 24403607 -218260746 + MIR SINE MIR 104 232 -30 2201 124 3 10 chr1 24403636 24403942 -218260411 + AluSq SINE Alu 2 305 -8 507 355 11 11 chr1 24404070 24404259 -218260094 + MIR SINE MIR 7 195 -67 639 240 5 62 chr1 24404981 24405189 -218259164 - MIR SINE MIR -31 231 36 376 277 67 0 chr1 24405312 24405431 -218258922 - L2 LINE L2 0 3313 3187 559 254 94 66 chr1 24405443 24405667 -218258686 - MIR SINE MIR -7 255 22 1877 158 3 29 chr1 24405667 24405978 -218258375 - AluJb SINE Alu -5 307 5 559 254 94 66 chr1 24405978 24405997 -218258356 - MIR SINE MIR -240 22 5 435 38 0 0 chr1 24406041 24406094 -218258259 + (TA)n Simple_repeat Simple_repeat 2 54 0 1455 189 115 9 chr1 24406138 24406460 -218257893 - MLT1A2 LTR MaLR -18 356 1 2266 101 0 26 chr1 24406584 24406890 -218257463 - AluSx SINE Alu -14 298 1 1547 158 8 20 chr1 24407168 24407422 -218256931 - AluJo SINE Alu -60 252 2 316 283 121 10 chr1 24407707 24407806 -218256547 - MER91C DNA MER1_type -30 110 1 412 320 23 6 chr1 24408492 24408667 -218255686 + L2 LINE L2 2569 2746 -568 525 110 0 12 chr1 24408670 24408752 -218255601 + MER1B DNA MER1_type 1 81 -256 * 1277 122 5 5 chr1 24408741 24408930 -218255423 + MER1B DNA MER1_type 151 339 0 658 279 153 46 chr1 24408938 24408973 -218255380 + L2 LINE L2 2750 2780 -533 1972 171 3 0 chr1 24408973 24409283 -218255070 + AluSx SINE Alu 1 311 -1 658 279 153 46 chr1 24409283 24409760 -218254593 + L2 LINE L2 2780 3313 0 693 263 6 11 chr1 24410172 24410347 -218254006 + MIR SINE MIR 18 191 -71 499 264 68 0 chr1 24410412 24410560 -218253793 - MIR SINE MIR -13 249 92 263 364 36 32 chr1 24411185 24411405 -218252948 + L2 LINE L2 2892 3112 -160 813 264 23 72 chr1 24411509 24411591 -218252762 + Charlie8 DNA MER1_type 24 108 -2309 1871 129 31 28 chr1 24411591 24411878 -218252475 + AluJb SINE Alu 1 288 -24 813 264 23 72 chr1 24411878 24412060 -218252293 + Charlie8 DNA MER1_type 108 275 -2142 2311 96 0 3 chr1 24412230 24412522 -218251831 + AluSc SINE Alu 2 292 -17 348 224 40 104 chr1 24412781 24412988 -218251365 - MER20B DNA MER1_type -143 76 4 300 284 138 0 chr1 24413016 24413125 -218251228 - MER117 DNA MER1_type -43 154 31 1970 255 116 24 chr1 24413391 24413534 -218250819 + L2 LINE L2 2077 2205 -1108 1724 125 98 0 chr1 24413534 24413835 -218250518 - AluSx SINE Alu 0 326 1 1970 255 116 24 chr1 24413835 24414752 -218249601 + L2 LINE L2 2205 3311 -2 2353 92 0 52 chr1 24414838 24415190 -218249163 - AluSg SINE Alu 0 335 1 294 270 81 9 chr1 24415659 24415770 -218248583 + L2 LINE L2 2846 2964 -308 1910 141 0 17 chr1 24415987 24416285 -218248068 + AluSx SINE Alu 1 293 -19 757 121 0 64 chr1 24416285 24416425 -218247928 - AluJo/FLAM SINE Alu -170 132 2 2295 84 7 0 chr1 24416601 24416886 -218247467 + AluSg SINE Alu 21 307 -3 290 267 133 9 chr1 24417268 24417373 -218246980 + L2 LINE L2 3155 3272 0 2248 114 0 0 chr1 24417703 24418002 -218246351 - AluSx SINE Alu -13 299 1 649 217 0 103 chr1 24418274 24418449 -218245904 - MER63A DNA MER1_type 0 210 54 2226 113 14 0 chr1 24418523 24418816 -218245537 - AluSg SINE Alu -13 297 1 331 314 39 20 chr1 24419213 24419366 -218244987 + MIR SINE MIR 35 190 -72 298 218 0 13 chr1 24419543 24419621 -218244732 - MLT1B LTR MaLR -280 110 34 2532 81 0 0 chr1 24419623 24419932 -218244421 + AluY SINE Alu 1 309 -2 204 40 0 0 chr1 24419978 24420003 -218244350 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1856 175 0 3 chr1 24420131 24420423 -218243930 - AluJo SINE Alu -18 294 4 453 186 0 0 chr1 24420641 24420727 -218243626 + MIR SINE MIR 102 187 -75 257 191 0 0 chr1 24420742 24420789 -218243564 - L2 LINE L2 -3 3310 3264 301 281 175 9 chr1 24421378 24421492 -218242861 + L2 LINE L2 3136 3268 -4 391 258 38 23 chr1 24422296 24422428 -218241925 - MIR3 SINE MIR -30 178 45 254 267 0 103 chr1 24422589 24422640 -218241713 - MIR SINE MIR -50 212 178 1154 120 17 81 chr1 24422640 24422874 -218241479 + MER20B DNA MER1_type 1 219 0 254 267 0 103 chr1 24422874 24422938 -218241415 - MIR SINE MIR -84 178 109 631 203 196 0 chr1 24422942 24423100 -218241253 + MIR SINE MIR 69 257 -5 1733 191 98 32 chr1 24424121 24424593 -218239760 - MLT1D LTR MaLR 0 505 3 577 311 133 20 chr1 24424611 24424859 -218239494 - Charlie8 DNA MER1_type -2141 276 1 22 35 0 0 chr1 24425368 24425397 -218238956 + AT_rich Low_complexity Low_complexity 1 29 0 650 181 155 20 chr1 24425641 24425847 -218238506 + MIR SINE MIR 31 262 0 343 329 42 30 chr1 24425982 24426149 -218238204 - MIR SINE MIR -77 185 17 338 288 69 16 chr1 24426637 24426794 -218237559 + MIR SINE MIR 18 176 -58 1418 127 5 32 chr1 24426798 24426851 -218237502 + AluJo SINE Alu 87 140 -172 2346 96 0 10 chr1 24426851 24427152 -218237201 + AluY SINE Alu 1 298 -13 1418 127 5 32 chr1 24427152 24427319 -218237034 + AluJo SINE Alu 140 301 -11 2840 176 45 45 chr1 24427332 24427921 -218236432 - L1MB7 LINE L1 0 6184 5593 2381 68 7 36 chr1 24427921 24428228 -218236125 - AluSp SINE Alu -15 298 1 2840 176 45 45 chr1 24428228 24428301 -218236052 - L1MB7 LINE L1 -590 5594 5522 271 277 24 12 chr1 24428301 24428384 -218235969 + MIR SINE MIR 174 257 -5 915 184 30 24 chr1 24428738 24428906 -218235447 + AluJo SINE Alu 1 169 -143 1132 188 62 26 chr1 24428907 24429122 -218235231 + MER33 DNA MER1_type 5 236 -2349 1981 151 3 7 chr1 24429122 24429414 -218234939 + AluJo SINE Alu 1 291 -21 1132 188 62 26 chr1 24429414 24429506 -218234847 + MER33 DNA MER1_type 236 323 -1 588 281 70 5 chr1 24429547 24429732 -218234621 - MIR SINE MIR -46 216 20 366 258 95 23 chr1 24429994 24430186 -218234167 - MIR3 SINE MIR -1 207 1 306 254 21 14 chr1 24431348 24431490 -218232863 + (CGGGG)n Simple_repeat Simple_repeat 2 144 0 2199 117 0 3 chr1 24431785 24432083 -218232270 + AluSx SINE Alu 1 297 -15 324 0 0 0 chr1 24432088 24432124 -218232229 + (CA)n Simple_repeat Simple_repeat 2 37 0 2080 111 7 34 chr1 24432178 24432338 -218232015 - AluSx SINE Alu -23 289 139 2392 76 0 7 chr1 24432338 24432640 -218231713 - AluY SINE Alu -11 300 1 2080 111 7 34 chr1 24432640 24432776 -218231577 - AluSx SINE Alu -173 139 1 420 220 40 10 chr1 24432857 24432957 -218231396 + MIR SINE MIR 45 147 -61 221 229 0 0 chr1 24433519 24433567 -218230786 - L2 LINE L2 -5 3308 3261 2485 93 0 0 chr1 24434029 24434340 -218230013 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 24434404 24434425 -218229928 + AT_rich Low_complexity Low_complexity 1 21 0 1662 104 142 19 chr1 24434682 24434950 -218229403 + AluSg1 SINE Alu 1 301 -8 491 211 16 39 chr1 24435218 24435346 -218229007 + MIR SINE MIR 17 141 -67 212 321 47 38 chr1 24435631 24435737 -218228616 - MIR SINE MIR -53 209 103 2381 93 0 0 chr1 24435984 24436275 -218228078 + AluSg SINE Alu 2 292 -18 200 278 0 103 chr1 24436278 24436375 -218227978 + MIR SINE MIR 19 105 -103 24 32 0 0 chr1 24436529 24436560 -218227793 + AT_rich Low_complexity Low_complexity 1 31 0 247 345 0 0 chr1 24436719 24436829 -218227524 + A-rich Low_complexity Low_complexity 1 110 0 238 235 73 0 chr1 24437493 24437561 -218226792 - MIR SINE MIR -67 141 69 186 213 85 0 chr1 24437841 24437888 -218226465 + L2 LINE L2 3263 3313 0 226 271 86 14 chr1 24437899 24437969 -218226384 - MIR SINE MIR -112 150 76 186 43 0 0 chr1 24437977 24438000 -218226353 + (GAA)n Simple_repeat Simple_repeat 2 24 0 195 297 30 69 chr1 24438304 24438405 -218225948 + MIR SINE MIR 42 138 -70 485 328 51 15 chr1 24438415 24438610 -218225743 - MIR3 SINE MIR -3 205 4 261 217 43 14 chr1 24440650 24440719 -218223634 - MIR SINE MIR -131 131 61 338 238 0 12 chr1 24442975 24443059 -218221294 + MIR SINE MIR 57 139 -123 210 154 26 0 chr1 24443238 24443277 -218221076 + MIR SINE MIR 81 120 -88 206 248 268 20 chr1 24443528 24443681 -218220672 - MIR SINE MIR -4 258 68 246 253 0 40 chr1 24443694 24443769 -218220584 - MIR SINE MIR -171 91 20 366 301 57 8 chr1 24444076 24444199 -218220154 - MIR SINE MIR -114 148 20 208 130 37 19 chr1 24444487 24444541 -218219812 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 335 327 0 9 chr1 24445718 24445828 -218218525 - MIR SINE MIR -82 126 18 2416 74 7 3 chr1 24446305 24446615 -218217738 - AluY SINE Alu 0 311 1 1779 119 72 18 chr1 24446658 24446936 -218217417 + AluSx SINE Alu 1 293 -19 202 268 0 75 chr1 24447534 24447583 -218216770 + MIR SINE MIR 51 102 -160 1625 176 65 7 chr1 24447583 24447873 -218216480 - AluJb SINE Alu -5 307 1 202 268 0 75 chr1 24447873 24447956 -218216397 + MIR SINE MIR 102 217 -45 346 276 75 0 chr1 24448204 24448385 -218215968 + MIR SINE MIR 51 252 -10 * 357 246 110 27 chr1 24448382 24448512 -218215841 - MIR SINE MIR -64 144 12 578 270 65 20 chr1 24448719 24448919 -218215434 + MIR SINE MIR 4 212 -50 2118 124 0 0 chr1 24448979 24449278 -218215075 - AluSx SINE Alu -13 299 1 1870 179 0 0 chr1 24449339 24449651 -218214702 - AluJb SINE Alu 0 312 1 1890 119 0 55 chr1 24449659 24449971 -218214382 - AluSx SINE Alu -17 295 1 556 206 167 33 chr1 24450048 24450228 -218214125 + MIR SINE MIR 59 262 0 528 242 132 11 chr1 24450671 24450861 -218213492 + MIR SINE MIR 38 250 -12 2247 83 0 16 chr1 24450935 24451248 -218213105 + AluY SINE Alu 1 308 -3 419 270 9 0 chr1 24451377 24451488 -218212865 + MIR SINE MIR 92 203 -59 749 168 0 0 chr1 24451567 24451722 -218212631 - AluJb SINE Alu 0 311 157 216 281 0 0 chr1 24451796 24451853 -218212500 - MIR SINE MIR -1 261 205 201 224 20 0 chr1 24452035 24452084 -218212269 + MIR SINE MIR 118 167 -95 1482 169 37 44 chr1 24452525 24452821 -218211532 - AluJo SINE Alu -18 294 1 1944 115 16 48 chr1 24452827 24453000 -218211353 - AluSc SINE Alu -5 304 144 2177 97 0 7 chr1 24453000 24453300 -218211053 - AluY SINE Alu -13 298 1 1944 115 16 48 chr1 24453300 24453440 -218210913 - AluSc SINE Alu -165 144 1 539 160 10 40 chr1 24453446 24453546 -218210807 - FLAM_A SINE Alu -14 128 32 266 355 47 0 chr1 24453564 24453671 -218210682 - MIR3 SINE MIR -54 154 43 531 291 95 0 chr1 24453728 24453886 -218210467 - MIR SINE MIR -70 192 20 712 295 45 0 chr1 24454796 24455020 -218209333 + MIR SINE MIR 3 236 -26 353 246 76 17 chr1 24455031 24455149 -218209204 + MIR SINE MIR 63 187 -75 1826 167 0 3 chr1 24455189 24455489 -218208864 - AluJo SINE Alu -13 299 1 855 172 0 8 chr1 24455609 24455743 -218208610 + FLAM_C SINE Alu 1 133 0 953 51 17 0 chr1 24456018 24456135 -218208218 + AluSq/x SINE Alu 13 131 -181 2084 101 10 7 chr1 24456137 24456434 -218207919 + AluSx SINE Alu 1 298 -14 738 125 58 8 chr1 24456614 24456734 -218207619 + AluJb SINE Alu 6 131 -181 2369 66 3 0 chr1 24456736 24457040 -218207313 + AluY SINE Alu 1 305 -6 2051 113 0 56 chr1 24457196 24457516 -218206837 + AluSx SINE Alu 1 302 -10 2163 72 0 30 chr1 24457521 24457825 -218206528 + AluY SINE Alu 1 295 -16 2386 42 0 7 chr1 24457867 24458155 -218206198 - AluY SINE Alu -11 300 15 2128 123 3 3 chr1 24458460 24458769 -218205584 + AluSx SINE Alu 1 309 -3 2068 43 0 8 chr1 24458947 24459205 -218205148 + AluY SINE Alu 54 309 -2 198 182 68 0 chr1 24459667 24459711 -218204642 - MIR SINE MIR -93 115 69 2143 106 0 23 chr1 24459782 24460085 -218204268 - AluSx SINE Alu -16 296 1 2114 103 10 0 chr1 24460085 24460376 -218203977 - AluSx SINE Alu -18 294 1 3389 119 15 96 chr1 24460376 24460417 -218203936 - L1MB7 LINE L1 -209 5975 5932 2224 91 0 0 chr1 24460417 24460704 -218203649 + AluSx SINE Alu 21 307 -5 3389 119 15 96 chr1 24460704 24460840 -218203513 - L1MB7 LINE L1 -252 5932 5787 769 168 8 8 chr1 24460840 24460971 -218203382 + AluJo/FLAM SINE Alu 1 131 -171 2141 93 3 20 chr1 24460971 24461271 -218203082 + AluSx SINE Alu 1 295 -17 3389 119 15 96 chr1 24461271 24461323 -218203030 - L1MB7 LINE L1 -396 5788 5733 1649 156 58 7 chr1 24461323 24461598 -218202755 - AluJb SINE Alu -21 291 3 3389 119 15 96 chr1 24461598 24462027 -218202326 - L1MB7 LINE L1 -451 5733 5374 2112 110 0 7 chr1 24462027 24462327 -218202026 - AluSq SINE Alu -15 298 1 3389 119 15 96 chr1 24462327 24462384 -218201969 - L1MB7 LINE L1 -810 5374 5314 261 0 0 0 chr1 24462394 24462423 -218201930 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 292 88 0 chr1 24462456 24462569 -218201784 - MIR SINE MIR -83 179 57 2088 137 0 0 chr1 24462586 24462893 -218201460 - AluSx SINE Alu 0 312 6 2412 44 17 0 chr1 24462897 24463195 -218201158 - AluY SINE Alu -8 303 1 208 269 0 0 chr1 24463207 24463259 -218201094 - L2 LINE L2 -1 3312 3261 229 183 50 17 chr1 24463365 24463425 -218200928 - L1ME4a LINE L1 0 6121 6060 213 238 250 0 chr1 24463706 24463790 -218200563 + MIR SINE MIR 71 175 -87 382 340 131 11 chr1 24463925 24464116 -218200237 + MIR SINE MIR 48 261 -1 200 322 56 0 chr1 24464117 24464207 -218200146 - L2 LINE L2 -19 3294 3200 607 299 51 8 chr1 24464278 24464512 -218199841 - MIR SINE MIR -6 256 13 420 20 0 0 chr1 24464684 24464733 -218199620 + (TG)n Simple_repeat Simple_repeat 2 50 0 2056 102 0 31 chr1 24464733 24465026 -218199327 - AluSx SINE Alu -28 284 1 1846 147 7 3 chr1 24465028 24465321 -218199032 - AluJb SINE Alu -18 294 1 647 338 26 4 chr1 24465386 24465617 -218198736 - MIR SINE MIR -5 257 22 498 264 78 0 chr1 24465825 24465954 -218198399 + MIR SINE MIR 123 261 -1 328 289 17 43 chr1 24466003 24466134 -218198219 - MIR SINE MIR -62 146 35 266 208 0 0 chr1 24466394 24466447 -218197906 - L2 LINE L2 -217 3055 3003 1771 113 62 0 chr1 24466518 24466793 -218197560 + AluSx SINE Alu 1 292 -20 529 293 77 49 chr1 24466804 24467050 -218197303 - MIR SINE MIR 0 262 10 541 292 60 43 chr1 24467472 24467705 -218196648 + MIR SINE MIR 20 256 -6 210 71 0 0 chr1 24468230 24468258 -218196095 + (A)n Simple_repeat Simple_repeat 1 28 0 229 253 103 35 chr1 24469163 24469250 -218195103 + MIR3 SINE MIR 10 102 -106 195 258 11 65 chr1 24469284 24469377 -218194976 - L2 LINE L2 -1 3271 3184 333 230 30 10 chr1 24469752 24469852 -218194501 + MIR SINE MIR 42 143 -65 218 268 0 0 chr1 24470204 24470260 -218194093 - MIR SINE MIR -111 151 96 276 262 90 16 chr1 24470299 24470421 -218193932 - MIR SINE MIR -96 166 36 903 74 8 8 chr1 24470432 24470554 -218193799 - AluJo SINE Alu -178 134 13 316 295 205 13 chr1 24470822 24470978 -218193375 - MIR SINE MIR -14 248 63 271 235 12 37 chr1 24471221 24471302 -218193051 - MIR SINE MIR -110 98 20 1642 93 110 0 chr1 24471399 24471635 -218192718 - AluSq SINE Alu -51 262 1 243 364 20 0 chr1 24471730 24471829 -218192524 - MIR SINE MIR -127 135 35 298 262 28 47 chr1 24471888 24471995 -218192358 + MIR3 SINE MIR 82 186 -22 308 255 255 7 chr1 24472265 24472418 -218191935 - MIR SINE MIR -50 212 22 270 0 0 0 chr1 24472615 24472645 -218191708 + (TG)n Simple_repeat Simple_repeat 1 30 0 324 324 88 7 chr1 24472751 24472899 -218191454 + MIR SINE MIR 25 184 -78 202 234 43 0 chr1 24473131 24473178 -218191175 + MIR SINE MIR 109 157 -105 365 266 51 46 chr1 24473940 24474134 -218190219 - MIR SINE MIR -62 146 3 300 268 45 27 chr1 24475245 24475357 -218188996 - MIR SINE MIR -90 172 59 1844 149 3 0 chr1 24475383 24475705 -218188648 - AluSx SINE Alu 0 312 1 2159 90 7 17 chr1 24476040 24476341 -218188012 + AluSx SINE Alu 1 298 -14 291 192 192 13 chr1 24476496 24476574 -218187779 + MER117 DNA MER1_type 1 92 -105 187 246 49 49 chr1 24476614 24476675 -218187678 + MIR SINE MIR 45 105 -103 1007 194 43 0 chr1 24476923 24477134 -218187219 + MIR SINE MIR 2 221 -41 339 283 88 0 chr1 24477191 24477304 -218187049 + MIR3 SINE MIR 32 154 -54 1749 179 3 0 chr1 24478734 24479035 -218185318 - AluJo SINE Alu -10 302 1 2168 95 9 49 chr1 24479223 24479400 -218184953 - AluSq SINE Alu 0 313 153 2192 110 0 0 chr1 24479400 24479701 -218184652 - AluSq SINE Alu -12 301 1 2168 95 9 49 chr1 24479701 24479849 -218184504 - AluSq SINE Alu -160 153 1 387 276 8 16 chr1 24479849 24479976 -218184377 - L1ME LINE L1 -421 5700 5575 635 307 66 89 chr1 24480770 24480988 -218183365 + L2 LINE L2 2720 2941 -331 2047 108 0 17 chr1 24480988 24481311 -218183042 - AluSg SINE Alu 0 318 1 1752 168 0 3 chr1 24481318 24481609 -218182744 - AluJb SINE Alu -22 290 1 635 307 66 89 chr1 24481609 24481946 -218182407 + L2 LINE L2 2947 3271 -1 1363 254 99 61 chr1 24482261 24482817 -218181536 - MLT1K LTR MaLR -10 578 2 684 160 14 35 chr1 24483361 24483505 -218180848 + MIR SINE MIR 46 186 -76 1772 146 3 17 chr1 24483507 24483809 -218180544 + AluJb SINE Alu 13 310 -2 910 150 0 0 chr1 24483811 24483944 -218180409 + FLAM_C SINE Alu 1 133 0 395 274 18 9 chr1 24483962 24484075 -218180278 - MIR SINE MIR -78 130 17 848 199 107 20 chr1 24484476 24484641 -218179712 + MER58C DNA MER1_type 1 187 -2233 1957 97 10 31 chr1 24484641 24484931 -218179422 - AluSx SINE Alu -8 304 21 848 199 107 20 chr1 24484931 24484961 -218179392 + MER58C DNA MER1_type 187 213 -2 574 248 15 0 chr1 24484963 24485100 -218179253 - MIR3 SINE MIR -50 158 20 2309 97 0 0 chr1 24485357 24485655 -218178698 - AluSx SINE Alu -14 298 1 205 245 0 0 chr1 24485677 24485726 -218178627 - MIR SINE MIR -67 141 93 370 80 0 0 chr1 24485830 24485880 -218178473 - AluSc SINE Alu -64 235 186 453 19 0 0 chr1 24485880 24485934 -218178419 + (CA)n Simple_repeat Simple_repeat 1 54 0 377 255 156 14 chr1 24486011 24486152 -218178201 + MIR3 SINE MIR 38 198 -10 325 326 30 21 chr1 24486162 24486331 -218178022 + MIR SINE MIR 14 146 -62 22 0 0 0 chr1 24486356 24486378 -218177975 + AT_rich Low_complexity Low_complexity 1 22 0 1897 146 3 0 chr1 24486385 24486680 -218177673 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 24487028 24487050 -218177303 + AT_rich Low_complexity Low_complexity 1 22 0 251 303 45 0 chr1 24487053 24487142 -218177211 + MIR SINE MIR 100 192 -70 2028 113 0 3 chr1 24487256 24487581 -218176772 - AluSq SINE Alu 0 324 1 289 339 9 0 chr1 24487586 24487695 -218176658 - MIR SINE MIR -51 211 102 27 0 0 0 chr1 24487715 24487742 -218176611 + AT_rich Low_complexity Low_complexity 1 27 0 1774 144 27 27 chr1 24487961 24488259 -218176094 + AluJb SINE Alu 1 298 -14 700 240 97 19 chr1 24488266 24488524 -218175829 - L2 LINE L2 -1321 1993 1716 1830 131 61 3 chr1 24488554 24488882 -218175471 - L1MB3 LINE L1 -23 6160 5814 1998 109 39 0 chr1 24488882 24489167 -218175186 + AluSx SINE Alu 1 296 -16 2197 113 7 0 chr1 24491951 24492261 -218172092 - AluSx SINE Alu 0 312 1 671 196 25 106 chr1 24493359 24493453 -218170900 + MER5A DNA MER1_type 1 101 -88 1509 113 35 9 chr1 24493453 24493684 -218170669 + AluSx SINE Alu 55 291 -21 1993 121 3 7 chr1 24493684 24493981 -218170372 + AluY SINE Alu 1 296 -15 671 196 25 106 chr1 24493981 24494084 -218170269 + MER5A DNA MER1_type 99 183 -6 307 28 0 0 chr1 24494116 24494152 -218170201 - U2 snRNA snRNA -152 36 1 421 314 26 47 chr1 24494154 24494489 -218169864 + L2 LINE L2 2686 3023 -249 9498 23 1 209 chr1 24494510 24496260 -218168093 - SVA Other Other 0 1386 1 23 0 0 0 chr1 24496414 24496437 -218167916 + AT_rich Low_complexity Low_complexity 1 23 0 1825 175 41 78 chr1 24496574 24497090 -218167263 + L1MB7 LINE L1 5446 5966 -218 1710 181 10 3 chr1 24497090 24497400 -218166953 + AluJo SINE Alu 1 312 0 1920 70 0 0 chr1 24497407 24497648 -218166705 + AluSx SINE Alu 63 303 -9 1065 166 0 81 chr1 24497648 24497788 -218166565 + L1MB8 LINE L1 4949 5099 -1047 1666 140 7 14 chr1 24497788 24498066 -218166287 - AluJo SINE Alu -1 311 36 1065 166 0 81 chr1 24498066 24498149 -218166204 + L1MB8 LINE L1 5099 5147 -999 2111 91 38 0 chr1 24498149 24498436 -218165917 - AluSc SINE Alu -11 298 1 1065 166 0 81 chr1 24498436 24498495 -218165858 + L1MB8 LINE L1 5147 5209 -937 815 176 0 14 chr1 24498495 24498637 -218165716 - AluJo SINE Alu -172 140 1 538 182 143 26 chr1 24498637 24498791 -218165562 + L1MB8 LINE L1 5908 6079 -99 410 246 203 40 chr1 24498810 24499086 -218165267 + L1M4 LINE L1 3845 4165 -1981 190 273 0 0 chr1 24499146 24499190 -218165163 - L2 LINE L2 -3 3310 3267 2491 65 0 56 chr1 24499302 24499625 -218164728 - AluY SINE Alu -6 305 1 2249 129 0 0 chr1 24499902 24500212 -218164141 - AluSx SINE Alu -2 310 1 196 250 36 0 chr1 24500213 24500269 -218164084 - L2 LINE L2 -13 3300 3243 791 164 22 87 chr1 24500382 24500506 -218163847 - MER5A DNA MER1_type -2 187 77 2517 93 3 0 chr1 24500506 24500818 -218163535 + AluSp SINE Alu 1 313 0 791 164 22 87 chr1 24500818 24500876 -218163477 - MER5A DNA MER1_type -112 77 17 219 231 0 19 chr1 24500926 24500978 -218163375 - L2 LINE L2 -75 3197 3147 1861 157 31 3 chr1 24501047 24501341 -218163012 + AluJb SINE Alu 1 302 -10 388 38 0 0 chr1 24501377 24501430 -218162923 - MADE1 DNA Mariner 0 80 28 598 224 109 12 chr1 24501434 24501599 -218162754 - MIR SINE MIR -79 183 3 1495 113 5 5 chr1 24501837 24502040 -218162313 + AluJb SINE Alu 1 203 -109 306 291 182 0 chr1 24502320 24502430 -218161923 - MIR SINE MIR -60 202 73 243 111 0 0 chr1 24502442 24502478 -218161875 - MER96 DNA MER1_type? -139 36 1 2412 97 3 0 chr1 24502906 24503215 -218161138 - AluSg SINE Alu 0 310 1 2027 150 0 3 chr1 24503217 24503517 -218160836 - AluJo SINE Alu 0 312 14 2070 105 31 14 chr1 24503797 24504083 -218160270 - AluSx SINE Alu -21 291 1 347 315 99 0 chr1 24504214 24504395 -218159958 - MIR SINE MIR -26 236 38 976 161 0 60 chr1 24504424 24504498 -218159855 + MER5A DNA MER1_type 3 80 -109 2319 99 0 10 chr1 24504498 24504801 -218159552 + AluSx SINE Alu 1 300 -12 976 161 0 60 chr1 24504801 24504925 -218159428 + MER5A DNA MER1_type 80 189 0 234 333 67 15 chr1 24505035 24505170 -218159183 - L2 LINE L2 -188 3084 2943 2615 49 0 7 chr1 24505295 24505600 -218158753 - AluY SINE Alu -8 303 1 2197 92 0 55 chr1 24505673 24506000 -218158353 - AluSg1 SINE Alu 0 309 1 623 169 17 102 chr1 24506028 24506205 -218158148 + MLT1D LTR MaLR 5 166 -339 2036 142 0 10 chr1 24506212 24506500 -218157853 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr1 24506502 24506540 -218157813 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1950 150 28 3 chr1 24506544 24506831 -218157522 - AluJb SINE Alu -18 294 1 3059 225 88 51 chr1 24506839 24507219 -218157134 - L2 LINE L2 -245 3068 2704 2111 140 19 7 chr1 24507219 24507527 -218156826 + AluSx SINE Alu 1 312 0 3059 225 88 51 chr1 24507527 24507760 -218156593 - L2 LINE L2 -609 2704 2481 2426 100 0 3 chr1 24507760 24508071 -218156282 + AluSg SINE Alu 1 310 0 3059 225 88 51 chr1 24508071 24508665 -218155688 - L2 LINE L2 -832 2481 1819 692 173 120 0 chr1 24508665 24508798 -218155555 + AluJb SINE Alu 137 285 -27 907 176 0 55 chr1 24508799 24508964 -218155389 - AluJo SINE Alu -66 246 91 3509 118 95 2 chr1 24509149 24509727 -218154626 + MER41B LTR ERV1 3 634 -1 461 291 63 54 chr1 24510067 24510078 -218154275 + MIR SINE MIR 19 28 -234 1700 166 9 69 chr1 24510078 24510220 -218154133 + AluJb SINE Alu 1 150 -162 2329 67 0 14 chr1 24510220 24510527 -218153826 + AluY SINE Alu 4 306 0 1700 166 9 69 chr1 24510527 24510715 -218153638 + AluJb SINE Alu 150 312 0 461 291 63 54 chr1 24510715 24510920 -218153433 + MIR SINE MIR 28 233 -29 198 0 0 0 chr1 24510920 24510942 -218153411 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 478 287 242 29 chr1 24511044 24511671 -218152682 - L2 LINE L2 -219 3053 2231 1125 133 21 11 chr1 24511672 24511860 -218152493 + MLT1D LTR MaLR 1 190 -315 1456 150 0 121 chr1 24511862 24512169 -218152184 + AluJb SINE Alu 33 302 -10 1043 152 47 6 chr1 24512180 24512351 -218152002 + AluJb SINE Alu 132 309 -3 2318 86 30 0 chr1 24512356 24512658 -218151695 + AluSp SINE Alu 1 311 -2 1015 214 87 29 chr1 24512675 24512916 -218151437 + MLT1D LTR MaLR 176 464 -41 1579 69 0 5 chr1 24512916 24513104 -218151249 + AluSx SINE Alu 1 187 -125 1015 214 87 29 chr1 24513104 24513149 -218151204 + MLT1D LTR MaLR 464 505 0 318 315 67 25 chr1 24513169 24513407 -218150946 - L2 LINE L2 -1114 2200 1953 632 202 0 0 chr1 24513407 24513526 -218150827 + FRAM SINE Alu 49 167 -9 2028 155 20 0 chr1 24513639 24513942 -218150411 - AluJb SINE Alu 0 312 4 302 250 90 0 chr1 24513947 24514047 -218150306 - L1ME4a LINE L1 0 6121 6013 189 0 0 0 chr1 24514117 24514138 -218150215 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 255 306 169 31 chr1 24514155 24514315 -218150038 - MIR SINE MIR -78 184 3 371 270 36 0 chr1 24514520 24514631 -218149722 - MIR SINE MIR -79 183 69 257 276 9 38 chr1 24514726 24514831 -218149522 + (CGGGG)n Simple_repeat Simple_repeat 1 102 0 313 261 13 26 chr1 24515040 24515193 -218149160 + G-rich Low_complexity Low_complexity 2 152 0 21 95 0 0 chr1 24515226 24515289 -218149064 + GC_rich Low_complexity Low_complexity 1 63 0 252 233 120 80 chr1 24516477 24516520 -218147833 + MIR SINE MIR 5 45 -217 2587 49 3 13 chr1 24516520 24516828 -218147525 - AluY SINE Alu -6 305 1 252 233 120 80 chr1 24516828 24516934 -218147419 + MIR SINE MIR 45 160 -102 2049 144 0 0 chr1 24516965 24517250 -218147103 - AluSx SINE Alu -21 291 7 528 256 42 42 chr1 24518276 24518467 -218145886 - MIR3 SINE MIR -2 206 16 1906 145 48 3 chr1 24519313 24519603 -218144750 - AluJb SINE Alu -9 303 1 2377 102 0 6 chr1 24520704 24521017 -218143336 - AluY SINE Alu 0 311 1 2401 93 0 0 chr1 24521021 24521312 -218143041 - AluSq SINE Alu -21 292 2 349 290 22 43 chr1 24521481 24521619 -218142734 - L2 LINE L2 -25 3288 3154 832 213 6 0 chr1 24521619 24521783 -218142570 + FRAM SINE Alu 1 165 -1 228 308 11 22 chr1 24521879 24521970 -218142383 + L2 LINE L2 2170 2259 -1055 1049 76 0 0 chr1 24522094 24522225 -218142128 - AluSg/x SINE Alu -5 307 177 1838 111 0 0 chr1 24522225 24522459 -218141894 + AluSx SINE Alu 47 280 -32 195 358 147 0 chr1 24522496 24522605 -218141748 + L2 LINE L2 3148 3272 0 1127 295 139 23 chr1 24522660 24523118 -218141235 - L2 LINE L2 -344 2970 2567 2308 118 0 6 chr1 24523118 24523432 -218140921 - AluSx SINE Alu 0 312 1 1127 295 139 23 chr1 24523432 24523516 -218140837 - L2 LINE L2 -747 2567 2494 1571 185 72 14 chr1 24523516 24523808 -218140545 - AluJo SINE Alu -3 309 1 1127 295 139 23 chr1 24523808 24523953 -218140400 - L2 LINE L2 -820 2494 2202 593 239 168 63 chr1 24524008 24524478 -218139875 - LTR67 LTR ERVL -1 556 6 913 260 63 48 chr1 24524594 24524613 -218139740 - L2 LINE L2 -1099 2215 2198 2332 93 7 3 chr1 24524613 24524923 -218139430 + AluSx SINE Alu 1 311 -1 913 260 63 48 chr1 24524923 24525238 -218139115 - L2 LINE L2 -1116 2198 1876 2159 92 46 0 chr1 24525240 24525521 -218138832 + AluSx SINE Alu 13 306 -6 364 259 65 41 chr1 24526152 24526322 -218138031 + MER5B DNA MER1_type 5 178 0 561 239 112 43 chr1 24526498 24526727 -218137626 + MIR SINE MIR 9 252 -10 675 167 7 43 chr1 24527022 24527160 -218137193 + FLAM_C SINE Alu 1 133 0 204 265 0 0 chr1 24527181 24527230 -218137123 + MER5B DNA MER1_type 2 50 -128 1647 167 48 0 chr1 24527243 24527554 -218136799 - L1MB7 LINE L1 -17 6167 5842 190 205 0 0 chr1 24527598 24527637 -218136716 - MIR SINE MIR -36 226 188 450 291 42 18 chr1 24527761 24527926 -218136427 - MIR SINE MIR -88 174 6 617 336 90 32 chr1 24527977 24528355 -218135998 - L2 LINE L2 0 3272 2873 443 272 58 0 chr1 24528849 24529022 -218135331 - MIR3 SINE MIR 0 208 26 376 273 78 45 chr1 24529282 24529436 -218134917 - MIR3 SINE MIR -27 181 23 572 272 150 5 chr1 24529616 24529829 -218134524 + MIR SINE MIR 7 250 -12 204 318 0 0 chr1 24530041 24530107 -218134246 + L2 LINE L2 2716 2781 -533 298 116 0 0 chr1 24530110 24530153 -218134200 + MIR SINE MIR 15 57 -205 2032 141 3 7 chr1 24530154 24530473 -218133880 - AluJo SINE Alu 0 312 1 2167 113 10 13 chr1 24530604 24530905 -218133448 - AluSg1 SINE Alu -9 300 1 331 314 39 20 chr1 24531302 24531455 -218132898 + MIR SINE MIR 35 190 -72 2399 88 0 10 chr1 24531514 24531821 -218132532 - AluSg1 SINE Alu 0 309 6 281 279 58 0 chr1 24531862 24531948 -218132405 + MIR3 SINE MIR 84 174 -34 287 306 52 8 chr1 24531988 24532122 -218132231 + MER117 DNA MER1_type 1 140 -57 1120 105 0 49 chr1 24532124 24532322 -218132031 + AluY SINE Alu 131 320 0 2140 100 18 4 chr1 24532332 24532633 -218131720 + AluSx SINE Alu 1 305 0 493 328 150 21 chr1 24533148 24533435 -218130918 - L3 LINE CR1 -1 1576 1253 2221 120 6 19 chr1 24533694 24534010 -218130343 + AluSx SINE Alu 1 312 0 275 236 106 62 chr1 24534014 24534175 -218130178 + MIR SINE MIR 62 229 -33 633 309 122 0 chr1 24534337 24534567 -218129786 - MIR SINE MIR -3 259 2 965 140 105 0 chr1 24534588 24534759 -218129594 - MER5A DNA MER1_type 0 189 1 1300 200 0 99 chr1 24534806 24535009 -218129344 - AluY SINE Alu 0 311 154 2221 119 0 0 chr1 24535009 24535302 -218129051 + AluSx SINE Alu 1 293 -19 1300 200 0 99 chr1 24535302 24535443 -218128910 - AluY SINE Alu -157 154 1 2321 81 7 0 chr1 24535618 24535903 -218128450 + AluSg SINE Alu 21 307 -3 290 267 133 9 chr1 24536285 24536390 -218127963 + L2 LINE L2 3155 3272 0 2036 95 46 7 chr1 24536720 24537005 -218127348 - AluSc SINE Alu -13 296 1 2711 39 0 3 chr1 24537172 24537478 -218126875 + AluY SINE Alu 1 305 -6 1366 209 56 133 chr1 24537513 24537795 -218126558 - MLT1J LTR MaLR -2 509 207 1821 140 32 36 chr1 24537795 24538103 -218126250 - AluJo SINE Alu -1 311 5 1366 209 56 133 chr1 24538103 24538129 -218126224 - MLT1J LTR MaLR -304 207 181 4792 101 54 67 chr1 24538129 24538958 -218125395 - L1MC1 LINE L1 -5 6328 5510 2406 102 0 6 chr1 24538958 24539271 -218125082 - AluSx SINE Alu -1 311 1 4792 101 54 67 chr1 24539271 24539335 -218125018 - L1MC1 LINE L1 -823 5510 5447 1366 209 56 133 chr1 24539335 24539360 -218124993 - MLT1J LTR MaLR -330 181 156 403 173 0 12 chr1 24539360 24539441 -218124912 - L1MA10 LINE L1 -1 6333 6254 1366 209 56 133 chr1 24539441 24539656 -218124697 - MLT1J LTR MaLR -355 156 1 243 204 0 20 chr1 24540202 24540251 -218124102 - L2 LINE L2 -2 3270 3223 2274 104 3 3 chr1 24540303 24540601 -218123752 - AluSx SINE Alu -8 304 7 1653 164 87 3 chr1 24540868 24541155 -218123198 - AluJb SINE Alu -1 311 1 846 140 0 22 chr1 24541161 24541297 -218123056 - FLAM_C SINE Alu 0 133 1 424 282 30 90 chr1 24541529 24541685 -218122668 - MIR SINE MIR -12 250 111 2160 105 18 3 chr1 24541685 24541970 -218122383 + AluSq SINE Alu 3 291 -22 424 282 30 90 chr1 24541970 24542047 -218122306 - MIR SINE MIR -151 111 31 200 307 13 0 chr1 24542302 24542377 -218121976 + MIR SINE MIR 62 137 -71 487 278 61 28 chr1 24542830 24543010 -218121343 - MIR SINE MIR -39 223 38 216 271 0 0 chr1 24543952 24544000 -218120353 + (CCA)n Simple_repeat Simple_repeat 2 49 0 629 249 112 5 chr1 24544201 24544398 -218119955 - MIR SINE MIR -21 241 24 596 267 181 0 chr1 24544533 24544754 -218119599 + MIR SINE MIR 2 262 0 257 26 26 0 chr1 24544757 24544795 -218119558 + MADE1 DNA Mariner 42 80 0 1559 201 10 10 chr1 24544878 24545011 -218119342 + AluJb SINE Alu 1 133 -179 2359 94 7 3 chr1 24545011 24545310 -218119043 + AluSx SINE Alu 2 301 -11 1559 201 10 10 chr1 24545310 24545469 -218118884 + AluJb SINE Alu 132 293 -19 277 280 119 8 chr1 24545528 24545646 -218118707 - L2 LINE L2 -5 3267 3137 193 309 0 0 chr1 24545776 24545831 -218118522 - L2 LINE L2 -213 3059 3005 491 165 17 43 chr1 24545843 24545958 -218118395 - MLT1K LTR MaLR -8 580 469 466 266 26 43 chr1 24547008 24547190 -218117163 - MIR SINE MIR -62 146 18 218 250 36 0 chr1 24547474 24547530 -218116823 + MIR SINE MIR 80 137 -125 428 213 88 52 chr1 24548323 24548459 -218115894 - MIR SINE MIR -72 190 50 285 286 103 6 chr1 24549031 24549206 -218115147 - L1ME4a LINE L1 -182 5939 5748 254 303 67 11 chr1 24549728 24549817 -218114536 - MIR SINE MIR -98 110 17 294 275 88 11 chr1 24550150 24550241 -218114112 + MIR SINE MIR 120 217 -45 212 119 24 24 chr1 24550241 24550283 -218114070 - L2 LINE L2 -5 3308 3267 511 220 150 6 chr1 24550550 24550723 -218113630 + MIR SINE MIR 29 226 -36 794 153 107 149 chr1 24550744 24551025 -218113328 + AluSg1 SINE Alu 21 289 -20 264 297 62 8 chr1 24551042 24551170 -218113183 - MIR SINE MIR 0 262 128 212 227 61 30 chr1 24551843 24551909 -218112444 - MIR SINE MIR -1 261 194 1964 168 63 113 chr1 24551935 24552290 -218112063 - MER44D DNA MER2_type -1882 605 223 2138 117 12 24 chr1 24552290 24552631 -218111722 + MER1B DNA MER1_type 1 337 0 1964 168 63 113 chr1 24552631 24552751 -218111602 - MER44D DNA MER2_type -2264 223 99 2128 123 6 19 chr1 24552751 24553067 -218111286 + AluSx SINE Alu 1 312 0 241 194 153 20 chr1 24553071 24553169 -218111184 + MIR SINE MIR 62 172 -90 609 291 116 0 chr1 24553425 24553624 -218110729 - MIR SINE MIR -39 223 2 1013 140 105 0 chr1 24553645 24553816 -218110537 - MER5A DNA MER1_type 0 189 1 1246 200 0 99 chr1 24553863 24554066 -218110287 - AluY SINE Alu 0 311 154 2195 119 0 0 chr1 24554066 24554359 -218109994 + AluSx SINE Alu 1 293 -19 1246 200 0 99 chr1 24554359 24554500 -218109853 - AluY SINE Alu -157 154 1 1112 158 8 0 chr1 24554667 24557709 -218106644 - ALR/Alpha Satellite centromeric 0 3065 1 1164 156 8 1 chr1 24557725 24571696 -218092657 - ALR/Alpha Satellite centromeric 0 14079 1 1563 110 4 13 chr1 24571696 24571924 -218092429 + AluSg/x SINE Alu 80 305 -4 1415 205 51 63 chr1 24571924 24572254 -218092099 - MLT1D LTR MaLR -95 410 78 504 81 0 92 chr1 24572254 24572341 -218092012 + MADE1 DNA Mariner 2 80 0 1415 205 51 63 chr1 24572341 24572383 -218091970 - MLT1D LTR MaLR -427 78 41 2014 88 80 0 chr1 24572383 24572657 -218091696 + AluSx SINE Alu 1 296 -16 1415 205 51 63 chr1 24572657 24572698 -218091655 - MLT1D LTR MaLR -464 41 1 2273 136 26 38 chr1 24572703 24572746 -218091607 + LTR37A LTR ERV1 3 45 -381 1300 192 72 48 chr1 24572746 24572890 -218091463 + MER58B DNA MER1_type 1 140 -2280 2501 59 0 16 chr1 24572890 24573194 -218091159 + AluY SINE Alu 1 299 -12 1300 192 72 48 chr1 24573194 24573382 -218090971 + MER58B DNA MER1_type 140 341 0 2273 136 26 38 chr1 24573382 24573683 -218090670 + LTR37A LTR ERV1 45 344 -82 1997 96 82 14 chr1 24573683 24573974 -218090379 + AluSq SINE Alu 1 311 -2 2273 136 26 38 chr1 24573974 24574055 -218090298 + LTR37A LTR ERV1 344 424 -2 35 24 0 0 chr1 24574316 24574358 -218089995 + AT_rich Low_complexity Low_complexity 1 42 0 1716 167 0 29 chr1 24574367 24574678 -218089675 + AluJo SINE Alu 1 302 -10 207 288 321 0 chr1 24574687 24574871 -218089482 + MIR SINE MIR 20 262 0 192 233 0 0 chr1 24574975 24575018 -218089335 - MIR SINE MIR -70 192 150 1994 140 3 13 chr1 24575038 24575352 -218089001 + AluJb SINE Alu 1 311 -1 547 346 77 3 chr1 24575367 24575653 -218088700 + L3 LINE CR1 1261 1567 -10 526 195 55 39 chr1 24575943 24576071 -218088282 + MER69A DNA AcHobo 47 176 -1 2324 70 23 13 chr1 24576235 24576534 -218087819 + AluY SINE Alu 1 302 -9 761 148 0 8 chr1 24576537 24576659 -218087694 + AluJb SINE Alu 170 290 -22 829 127 0 0 chr1 24576661 24576771 -218087582 + AluSq/x SINE Alu 1 110 -203 277 135 0 0 chr1 24576784 24576821 -218087532 - 7SLRNA srpRNA srpRNA -220 100 64 2152 121 3 3 chr1 24576991 24577281 -218087072 + AluSx SINE Alu 1 290 -22 1569 168 44 37 chr1 24577738 24577860 -218086493 + AluJo SINE Alu 1 121 -191 243 0 0 0 chr1 24577860 24577887 -218086466 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1529 121 0 5 chr1 24577888 24578103 -218086250 - AluSg/x SINE Alu -13 299 86 1569 168 44 37 chr1 24578103 24578275 -218086078 + AluJo SINE Alu 120 299 -13 216 0 0 0 chr1 24578309 24578333 -218086020 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 275 189 0 0 chr1 24579040 24579093 -218085260 - MER20 DNA MER1_type 0 219 167 597 251 17 46 chr1 24579117 24579292 -218085061 + MER69A DNA AcHobo 1 170 -7 1305 178 111 19 chr1 24579353 24579519 -218084834 - AluJo SINE Alu -17 295 93 1986 78 7 26 chr1 24579519 24579788 -218084565 - AluSc SINE Alu -10 299 36 1305 178 111 19 chr1 24579788 24579891 -218084462 - AluJo SINE Alu -219 93 1 2342 81 0 16 chr1 24579918 24580227 -218084126 - AluY SINE Alu -7 304 1 812 183 0 0 chr1 24580233 24580364 -218083989 - FLAM_C SINE Alu -12 131 1 358 279 27 18 chr1 24580369 24580480 -218083873 + MER103 DNA DNA 52 163 -3 2262 109 3 3 chr1 24580802 24581113 -218083240 + AluSq SINE Alu 1 311 -2 1866 149 3 17 chr1 24581286 24581582 -218082771 - AluJo SINE Alu -20 292 1 441 318 81 0 chr1 24581621 24581769 -218082584 + MIR SINE MIR 21 180 -82 1649 124 0 0 chr1 24581821 24582046 -218082307 + AluSg/x SINE Alu 69 293 -17 25 0 0 0 chr1 24585863 24585888 -218078465 + AT_rich Low_complexity Low_complexity 1 25 0 2211 125 0 0 chr1 24586265 24586568 -218077785 + AluSx SINE Alu 3 305 -7 1601 166 23 23 chr1 24586887 24587189 -218077164 - AluJb SINE Alu -10 302 1 424 91 0 0 chr1 24587284 24587339 -218077014 + AluY SINE Alu 133 187 -124 479 187 119 8 chr1 24588372 24588506 -218075847 + MIR SINE MIR 44 192 -70 445 300 69 64 chr1 24588555 24589119 -218075234 + L2 LINE L2 2597 3242 -30 2047 107 3 14 chr1 24589197 24589488 -218074865 - AluSx SINE Alu -24 288 1 1688 163 0 14 chr1 24589618 24589894 -218074459 - AluJo SINE Alu -39 273 2 566 297 169 52 chr1 24589973 24590000 -218074353 - L2 LINE L2 -6 3307 3285 2390 93 0 0 chr1 24590000 24590300 -218074053 + AluSx SINE Alu 2 301 -11 2196 122 0 6 chr1 24590300 24590611 -218073742 + AluSg SINE Alu 1 310 0 566 297 169 52 chr1 24590611 24591003 -218073350 - L2 LINE L2 -27 3286 2838 235 222 25 74 chr1 24591020 24591101 -218073252 - L2 LINE L2 -973 2341 2265 2268 80 10 23 chr1 24591130 24591432 -218072921 + AluSp SINE Alu 1 298 -15 1720 173 22 26 chr1 24591441 24591754 -218072599 + AluJb SINE Alu 1 312 0 2527 40 0 23 chr1 24592112 24592414 -218071939 - AluY SINE Alu -6 305 11 872 189 34 0 chr1 24592860 24593008 -218071345 - FRAM SINE Alu -23 153 1 808 174 0 34 chr1 24593027 24593176 -218071177 + AluJb SINE Alu 149 292 -20 1130 152 0 0 chr1 24593375 24593546 -218070807 - AluSx SINE Alu -141 171 1 1606 158 75 7 chr1 24593783 24594062 -218070291 - AluJb SINE Alu -14 298 1 226 320 157 20 chr1 24594147 24594344 -218070009 + MIR SINE MIR 31 254 -8 2248 104 3 16 chr1 24594482 24594790 -218069563 + AluSx SINE Alu 1 304 -8 1896 150 28 0 chr1 24595012 24595298 -218069055 - AluSx SINE Alu -6 306 13 978 140 0 0 chr1 24595298 24595434 -218068919 - AluJb SINE Alu -176 136 1 2089 123 0 45 chr1 24595593 24595902 -218068451 - AluSx SINE Alu -17 295 1 1879 151 0 3 chr1 24595992 24596323 -218068030 - AluJb SINE Alu 0 330 1 2364 104 0 0 chr1 24596323 24596621 -218067732 - AluSc SINE Alu -10 299 1 2394 97 3 0 chr1 24596643 24596951 -218067402 - AluSp SINE Alu -4 309 1 2181 111 7 14 chr1 24597167 24597464 -218066889 + AluSx SINE Alu 1 295 -17 1165 202 90 0 chr1 24597504 24597781 -218066572 + Charlie4a DNA MER1_type 17 318 -190 986 150 0 135 chr1 24597787 24598047 -218066306 + AluJb SINE Alu 85 309 -3 2645 44 0 0 chr1 24598051 24598349 -218066004 + AluY SINE Alu 1 298 -13 2369 70 3 25 chr1 24598351 24598667 -218065686 + AluY SINE Alu 1 309 -2 774 158 96 6 chr1 24598672 24598849 -218065504 + Charlie4a DNA MER1_type 310 502 -6 246 143 24 0 chr1 24598859 24598901 -218065452 + MER69A DNA AcHobo 2 44 -133 599 88 0 197 chr1 24598906 24599043 -218065310 + FLAM_C SINE Alu 20 129 -14 426 188 40 30 chr1 24599044 24599145 -218065208 + MER69A DNA AcHobo 33 134 -43 246 75 0 57 chr1 24599147 24599200 -218065153 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 2178 104 7 0 chr1 24599209 24599506 -218064847 - AluSq SINE Alu -14 299 1 2228 103 20 0 chr1 24599609 24599911 -218064442 - AluSq SINE Alu -5 308 1 322 208 240 10 chr1 24607273 24607369 -218056984 + L2 LINE L2 3192 3309 -4 2166 117 10 0 chr1 24607674 24607965 -218056388 - AluY SINE Alu -17 294 1 677 252 0 0 chr1 24608280 24608427 -218055926 + MIR SINE MIR 116 262 0 1194 89 0 95 chr1 24608551 24608741 -218055612 - AluSg/x SINE Alu -7 305 134 1506 75 0 35 chr1 24608741 24608942 -218055411 - AluY SINE Alu -1 310 117 2275 117 0 0 chr1 24609116 24609415 -218054938 + AluSx SINE Alu 1 299 -13 2161 126 10 0 chr1 24610119 24610429 -218053924 - AluSq SINE Alu 0 313 1 635 108 189 0 chr1 24610461 24610572 -218053781 - FLAM_C SINE Alu -10 133 2 221 119 24 0 chr1 24610717 24610759 -218053594 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 372 323 91 35 chr1 24611530 24611762 -218052591 + L1ME4a LINE L1 5875 6119 -2 364 279 5 100 chr1 24611793 24611865 -218052488 + L2 LINE L2 3094 3171 -142 2250 104 0 14 chr1 24611865 24612162 -218052191 - AluSx SINE Alu -19 293 1 364 279 5 100 chr1 24612162 24612279 -218052074 + L2 LINE L2 3171 3265 -48 296 230 70 30 chr1 24612345 24612445 -218051908 + LTR16C LTR ERVL 113 216 -275 2248 119 7 3 chr1 24612834 24613144 -218051209 + AluSx SINE Alu 1 311 -1 2284 119 0 3 chr1 24613461 24613772 -218050581 - AluSx SINE Alu -2 310 1 3746 71 80 5 chr1 24613862 24614414 -218049939 + LTR61 LTR ERV1 1 593 -2 23 0 0 0 chr1 24614562 24614585 -218049768 + AT_rich Low_complexity Low_complexity 1 23 0 1111 128 0 0 chr1 24614585 24614734 -218049619 + FRAM SINE Alu 18 166 -10 525 110 0 12 chr1 24614884 24614966 -218049387 + MER1B DNA MER1_type 1 81 -256 * 1277 122 5 5 chr1 24614955 24615144 -218049209 + MER1B DNA MER1_type 151 339 0 665 281 153 46 chr1 24615152 24615187 -218049166 + L2 LINE L2 2750 2780 -533 1997 168 3 0 chr1 24615187 24615497 -218048856 + AluSx SINE Alu 1 311 -1 665 281 153 46 chr1 24615497 24615974 -218048379 + L2 LINE L2 2780 3313 0 693 263 6 11 chr1 24616386 24616561 -218047792 + MIR SINE MIR 18 191 -71 499 264 68 0 chr1 24616626 24616774 -218047579 - MIR SINE MIR -13 249 92 263 364 36 32 chr1 24617399 24617619 -218046734 + L2 LINE L2 2892 3112 -160 827 260 23 72 chr1 24617723 24617805 -218046548 + Charlie8 DNA MER1_type 24 108 -2309 1871 129 31 28 chr1 24617805 24618092 -218046261 + AluJb SINE Alu 1 288 -24 827 260 23 72 chr1 24618092 24618274 -218046079 + Charlie8 DNA MER1_type 108 275 -2142 2328 95 0 3 chr1 24618444 24618738 -218045615 + AluSc SINE Alu 2 294 -15 372 220 40 104 chr1 24618996 24619203 -218045150 - MER20B DNA MER1_type -143 76 4 300 284 138 0 chr1 24619231 24619340 -218045013 - MER117 DNA MER1_type -43 154 31 1986 254 115 24 chr1 24619606 24619749 -218044604 + L2 LINE L2 2077 2206 -1107 1746 121 98 0 chr1 24619749 24620050 -218044303 - AluSx SINE Alu 0 326 1 1986 254 115 24 chr1 24620050 24620968 -218043385 + L2 LINE L2 2206 3311 -2 2457 96 0 3 chr1 24621050 24621390 -218042963 - AluSx SINE Alu 0 312 1 221 119 24 0 chr1 24621532 24621574 -218042779 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 372 323 91 35 chr1 24622345 24622577 -218041776 + L1ME4a LINE L1 5875 6119 -2 364 279 5 100 chr1 24622608 24622680 -218041673 + L2 LINE L2 3094 3171 -142 2250 104 0 14 chr1 24622680 24622977 -218041376 - AluSx SINE Alu -19 293 1 364 279 5 100 chr1 24622977 24623094 -218041259 + L2 LINE L2 3171 3265 -48 295 214 97 29 chr1 24623157 24623260 -218041093 + LTR16C LTR ERVL 107 216 -275 2283 120 7 0 chr1 24623649 24623958 -218040395 + AluSx SINE Alu 1 311 -1 2269 122 0 3 chr1 24624275 24624586 -218039767 - AluSx SINE Alu -2 310 1 3746 71 80 5 chr1 24624676 24625228 -218039125 + LTR61 LTR ERV1 1 593 -2 23 0 0 0 chr1 24625376 24625399 -218038954 + AT_rich Low_complexity Low_complexity 1 23 0 1130 121 0 0 chr1 24625399 24625548 -218038805 + FRAM SINE Alu 18 166 -10 2445 76 0 17 chr1 24625549 24625850 -218038503 + AluSp SINE Alu 1 296 -17 407 226 174 116 chr1 24626206 24626265 -218038088 + L1ME4a LINE L1 5902 5956 -165 1833 148 41 7 chr1 24626265 24626556 -218037797 - AluSx SINE Alu -11 301 1 2245 122 0 0 chr1 24626566 24626862 -218037491 - AluSx SINE Alu -16 296 1 407 226 174 116 chr1 24626862 24626981 -218037372 + L1ME4a LINE L1 5964 6102 -19 469 235 113 67 chr1 24627002 24627112 -218037241 + L1ME4a LINE L1 5873 5976 -145 266 87 22 0 chr1 24627112 24627158 -218037195 + (TA)n Simple_repeat Simple_repeat 1 47 0 469 235 113 67 chr1 24627158 24627200 -218037153 + L1ME4a LINE L1 5976 6015 -106 2101 112 3 21 chr1 24627200 24627518 -218036835 - AluSg SINE Alu 0 313 1 2021 128 4 4 chr1 24627525 24627829 -218036524 - AluSg SINE Alu 0 304 1 469 235 113 67 chr1 24627829 24627903 -218036450 + L1ME4a LINE L1 6020 6121 0 2393 98 3 0 chr1 24628144 24628451 -218035902 - AluSx SINE Alu -4 308 1 299 214 0 83 chr1 24628452 24628536 -218035817 - HAL1 LINE L1 -2426 81 5 350 263 83 0 chr1 24629029 24629123 -218035230 + L1ME4a LINE L1 5964 6074 -47 2540 87 3 0 chr1 24629123 24629434 -218034919 - AluSp SINE Alu -1 312 1 350 263 83 0 chr1 24629434 24629472 -218034881 + L1ME4a LINE L1 6074 6107 -14 2181 127 0 0 chr1 24629619 24629918 -218034435 - AluJb SINE Alu -11 301 3 207 265 20 0 chr1 24630451 24630500 -218033853 + CT-rich Low_complexity Low_complexity 3 52 0 234 189 19 0 chr1 24630622 24630675 -218033678 + (CA)n Simple_repeat Simple_repeat 1 54 0 263 272 68 48 chr1 24630923 24631026 -218033327 - L2 LINE L2 0 3272 3168 2332 100 0 0 chr1 24631451 24631740 -218032613 - AluSx SINE Alu -23 289 1 2236 124 3 0 chr1 24632689 24632988 -218031365 + AluSx SINE Alu 7 306 -6 1739 222 32 53 chr1 24632992 24633382 -218030971 - L1ME1 LINE L1 -5 6161 5783 2084 141 0 7 chr1 24633382 24633672 -218030681 - AluJb SINE Alu -24 288 1 1739 222 32 53 chr1 24633672 24633812 -218030541 - L1ME1 LINE L1 -383 5783 5642 761 215 58 92 chr1 24634268 24634529 -218029824 - MIR SINE MIR -10 252 1 1931 167 49 24 chr1 24634591 24635016 -218029337 + MER63B DNA MER1_type 1 436 0 257 254 32 75 chr1 24635888 24636044 -218028309 - MIR SINE MIR -60 148 3 213 196 65 0 chr1 24636499 24636545 -218027808 - MIR SINE MIR -97 165 117 278 231 41 33 chr1 24636974 24637095 -218027258 + C-rich Low_complexity Low_complexity 4 125 0 21 0 0 0 chr1 24637287 24637308 -218027045 + GC_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr1 24638305 24638353 -218026000 + (TG)n Simple_repeat Simple_repeat 2 49 0 293 233 0 0 chr1 24638490 24638550 -218025803 - MER5A DNA MER1_type -118 71 12 1684 144 14 18 chr1 24638576 24638853 -218025500 - AluJb SINE Alu -14 298 23 2474 67 0 3 chr1 24638859 24639159 -218025194 - AluY SINE Alu -12 299 1 370 208 104 0 chr1 24639937 24640033 -218024320 - L2 LINE L2 -7 3306 3201 1918 139 38 0 chr1 24640315 24640602 -218023751 + AluJo SINE Alu 1 298 -14 428 259 18 9 chr1 24640675 24640787 -218023566 - MIR3 SINE MIR -7 201 89 299 338 41 28 chr1 24640907 24641052 -218023301 + LTR16C LTR ERVL 162 308 -183 859 150 69 19 chr1 24641053 24641213 -218023140 - AluJo SINE Alu -27 285 118 398 215 13 0 chr1 24641214 24641293 -218023060 + LTR16C LTR ERVL 382 461 -30 258 104 39 117 chr1 24641296 24641373 -218022980 - MIR SINE MIR -118 90 20 927 207 53 5 chr1 24641373 24641581 -218022772 - MER20 DNA MER1_type 0 219 2 192 375 52 0 chr1 24642466 24642562 -218021791 + L2 LINE L2 3213 3313 0 347 270 35 26 chr1 24643107 24643222 -218021131 - MIR SINE MIR -60 202 87 2371 109 0 0 chr1 24645132 24645434 -218018919 - AluSx SINE Alu -10 302 1 191 260 77 39 chr1 24645532 24645636 -218018717 + L2 LINE L2 2941 3048 -224 437 257 71 0 chr1 24645706 24645819 -218018534 - L2 LINE L2 -1 3312 3192 435 313 80 36 chr1 24645945 24646169 -218018184 + MIR SINE MIR 17 250 -12 749 262 52 4 chr1 24646864 24647112 -218017241 + MIR SINE MIR 1 260 -2 405 301 49 18 chr1 24647150 24647313 -218017040 - MIR SINE MIR -48 214 47 273 308 15 45 chr1 24647499 24647632 -218016721 + G-rich Low_complexity Low_complexity 1 129 0 1961 165 0 3 chr1 24648159 24648456 -218015897 - AluJb SINE Alu -16 296 1 680 196 143 24 chr1 24648638 24648847 -218015506 - MIR SINE MIR -16 246 13 2040 129 11 0 chr1 24649592 24649879 -218014474 - AluSx SINE Alu -22 290 1 280 269 93 21 chr1 24651421 24651614 -218012739 + L2 LINE L2 2854 3060 -212 181 250 0 0 chr1 24652303 24652347 -218012006 + MIR SINE MIR 110 153 -109 183 200 0 0 chr1 24652924 24652959 -218011394 - L2 LINE L2 -99 3173 3139 1817 146 4 4 chr1 24653221 24653531 -218010822 - AluSx SINE Alu 0 310 1 2258 70 3 0 chr1 24653634 24653919 -218010434 + AluY SINE Alu 1 286 -25 1646 65 5 0 chr1 24654020 24654234 -218010119 + AluY SINE Alu 97 311 0 2385 63 3 3 chr1 24654278 24654579 -218009774 + AluY SINE Alu 1 301 -10 279 226 0 0 chr1 24654741 24654794 -218009559 + MIR SINE MIR 60 112 -150 697 243 151 37 chr1 24655543 24655761 -218008592 + MIR SINE MIR 5 247 -15 232 347 7 40 chr1 24656667 24656817 -218007536 - L2 LINE L2 -448 2866 2722 1765 121 26 18 chr1 24656916 24657189 -218007164 - L1PB4 LINE L1 -5 6151 5877 198 171 0 0 chr1 24657244 24657285 -218007068 + T-rich Low_complexity Low_complexity 1 41 0 1606 103 4 65 chr1 24657285 24657404 -218006949 - AluSq SINE Alu -63 250 154 2022 84 0 81 chr1 24657404 24657727 -218006626 - AluSx SINE Alu -15 297 1 1606 103 4 65 chr1 24657727 24657869 -218006484 - AluSq SINE Alu -159 154 5 289 262 252 0 chr1 24658146 24658253 -218006100 + MIR3 SINE MIR 13 146 -62 322 239 31 33 chr1 24658322 24658420 -218005933 + MIR3 SINE MIR 100 193 -15 1013 130 50 0 chr1 24658494 24658655 -218005698 - MER20 DNA MER1_type -4 215 47 24 0 0 0 chr1 24658668 24658692 -218005661 + AT_rich Low_complexity Low_complexity 1 24 0 1818 155 0 17 chr1 24658911 24659208 -218005145 + AluJb SINE Alu 1 292 -20 314 240 42 49 chr1 24659256 24659394 -218004959 + L1ME LINE L1 5690 5807 -314 1639 144 6 35 chr1 24659394 24659706 -218004647 + AluJo SINE Alu 1 303 -9 314 240 42 49 chr1 24659706 24659718 -218004635 + L1ME LINE L1 5807 5818 -303 537 138 12 0 chr1 24659775 24659855 -218004498 - MER2 DNA MER2_type -264 81 1 222 220 231 11 chr1 24659934 24660025 -218004328 + MIR SINE MIR 41 151 -111 775 130 0 0 chr1 24660027 24660135 -218004218 + Tigger7 DNA MER2_type 3 110 -623 1628 169 10 7 chr1 24660135 24660443 -218003910 - AluSq SINE Alu -4 309 1 1041 149 0 0 chr1 24662438 24662612 -218001741 - AluSg/x SINE Alu -5 305 132 24 53 0 0 chr1 24662781 24662819 -218001534 + AT_rich Low_complexity Low_complexity 1 38 0 905 182 67 6 chr1 24663071 24663236 -218001117 + FAM SINE Alu 1 175 0 570 267 113 10 chr1 24665491 24665686 -217998667 - MIR SINE MIR -30 232 18 1669 166 0 13 chr1 24666444 24666746 -217997607 + AluJb SINE Alu 2 299 -13 391 214 233 0 chr1 24666962 24667065 -217997288 - MER5A DNA MER1_type 0 189 63 2683 152 116 43 chr1 24667075 24667680 -217996673 - L1MB7 LINE L1 0 6184 5536 839 214 46 12 chr1 24669126 24669263 -217995090 - MLT1F1 LTR MaLR -8 559 428 1786 127 0 34 chr1 24669263 24669554 -217994799 + AluJo SINE Alu 1 281 -31 839 214 46 12 chr1 24669554 24669845 -217994508 - MLT1F1 LTR MaLR -139 428 3 720 213 57 0 chr1 24670104 24670245 -217994108 + FAM SINE Alu 1 149 -36 2207 71 0 4 chr1 24670248 24670557 -217993796 - AluY SINE Alu 0 308 1 1013 87 0 53 chr1 24670557 24670707 -217993646 - AluSp SINE Alu -19 294 153 182 311 197 45 chr1 24671003 24671208 -217993145 - L2 LINE L2 -1314 2000 1827 886 193 0 0 chr1 24671208 24671358 -217992995 + FRAM SINE Alu 1 150 -16 182 311 197 45 chr1 24671358 24671680 -217992673 - L2 LINE L2 -1487 1827 1393 293 250 102 28 chr1 24671754 24671862 -217992491 + MER46C DNA MER2_type 63 178 -160 307 121 127 0 chr1 24671914 24671996 -217992357 + L1ME3A LINE L1 5825 5919 -251 186 133 0 0 chr1 24672254 24672284 -217992069 + (TG)n Simple_repeat Simple_repeat 2 31 0 274 243 122 0 chr1 24672451 24672525 -217991828 - MIR SINE MIR -73 189 107 1667 171 20 3 chr1 24672857 24673150 -217991203 + AluSx SINE Alu 1 298 -14 2110 86 3 17 chr1 24673693 24673995 -217990358 - AluSc SINE Alu -11 298 1 333 68 0 0 chr1 24674190 24674234 -217990119 + (GA)n Simple_repeat Simple_repeat 2 45 0 346 268 52 0 chr1 24674388 24674485 -217989868 + MIR SINE MIR 47 148 -60 1333 194 155 85 chr1 24674732 24674798 -217989555 - MLT1D LTR MaLR -2 503 443 1550 138 16 84 chr1 24674798 24675109 -217989244 + AluJo SINE Alu 2 291 -21 1905 140 7 0 chr1 24675110 24675395 -217988958 + AluSx SINE Alu 1 287 -25 1333 194 155 85 chr1 24675395 24675757 -217988596 - MLT1D LTR MaLR -62 443 35 1562 143 47 63 chr1 24675757 24676057 -217988296 - AluJo SINE Alu -17 295 1 1333 194 155 85 chr1 24676057 24676095 -217988258 - MLT1D LTR MaLR -470 35 1 282 311 0 0 chr1 24676367 24676457 -217987896 + MIR SINE MIR 34 123 -85 987 253 59 13 chr1 24676721 24676958 -217987395 + MIR SINE MIR 13 260 -2 2108 99 7 3 chr1 24677037 24677331 -217987022 - AluSp SINE Alu -18 295 1 2283 93 0 0 chr1 24677357 24677658 -217986695 - AluSx SINE Alu -11 301 1 431 308 103 11 chr1 24678724 24678909 -217985444 - MIR SINE MIR 0 262 61 370 227 9 73 chr1 24678922 24679032 -217985321 - L2 LINE L2 -203 3069 2967 964 163 22 22 chr1 24679284 24679468 -217984885 + MLT1A1 LTR MaLR 2 185 -180 941 97 0 84 chr1 24679825 24679910 -217984443 + MLT1A1 LTR MaLR 224 293 -72 2043 92 18 11 chr1 24679910 24680217 -217984136 - AluSq SINE Alu 0 309 1 941 97 0 84 chr1 24680217 24680285 -217984068 + MLT1A1 LTR MaLR 293 365 0 558 272 134 5 chr1 24680285 24680487 -217983866 + MIR SINE MIR 35 262 0 228 213 0 93 chr1 24680634 24680709 -217983644 + MIR SINE MIR 183 250 -12 1783 159 3 28 chr1 24681675 24681995 -217982358 - AluJo SINE Alu 0 312 1 709 199 0 22 chr1 24682005 24682141 -217982212 - FLAM_A SINE Alu 0 133 1 957 51 153 0 chr1 24682150 24682287 -217982066 - AluY SINE Alu -18 293 136 338 350 20 25 chr1 24682372 24682569 -217981784 - L2 LINE L2 -2 3311 3116 1787 116 36 4 chr1 24682705 24683010 -217981343 - AluJb SINE Alu 0 314 1 1732 168 0 14 chr1 24683010 24683306 -217981047 - AluJb SINE Alu -19 293 1 243 204 19 19 chr1 24683366 24683420 -217980933 - L2 LINE L2 -80 3233 3180 649 177 3 233 chr1 24683422 24683584 -217980769 - MIR SINE MIR -16 246 175 2239 100 7 0 chr1 24683584 24683893 -217980460 - AluSx SINE Alu -1 311 1 649 177 3 233 chr1 24683893 24684013 -217980340 - MIR SINE MIR -87 175 29 240 262 16 0 chr1 24684503 24684564 -217979789 + MIR SINE MIR 75 136 -72 1201 77 0 0 chr1 24684611 24684766 -217979587 - L1PB1 LINE L1 -1 6150 5996 2084 98 10 16 chr1 24684772 24685079 -217979274 - AluSx SINE Alu -6 306 2 309 194 79 33 chr1 24685113 24685229 -217979124 - MIR SINE MIR -75 133 20 459 273 42 36 chr1 24686609 24686774 -217977579 - MIR SINE MIR -81 181 16 1637 174 3 7 chr1 24687449 24687475 -217976878 - AluJo SINE Alu -3 309 284 224 0 65 0 chr1 24687475 24687506 -217976847 + (TTTAG)n Simple_repeat Simple_repeat 3 35 0 1637 174 3 7 chr1 24687506 24687789 -217976564 - AluJo SINE Alu -28 284 1 354 293 76 38 chr1 24687852 24688009 -217976344 - L1MC4a LINE L1 -1853 5955 5793 225 0 0 0 chr1 24688247 24688272 -217976081 + (T)n Simple_repeat Simple_repeat 1 25 0 1512 174 0 11 chr1 24688317 24688581 -217975772 - AluJb SINE Alu -51 261 1 552 234 94 42 chr1 24688581 24688867 -217975486 - L1MC4a LINE L1 -1916 5892 5592 21 0 0 0 chr1 24688891 24688912 -217975441 + AT_rich Low_complexity Low_complexity 1 21 0 889 171 76 0 chr1 24689014 24689172 -217975181 + FAM SINE Alu 1 170 -5 1269 127 47 47 chr1 24689373 24689626 -217974727 - AluY SINE Alu -2 309 57 1178 118 0 17 chr1 24689696 24689874 -217974479 - AluSg/x SINE Alu -11 299 125 2334 82 0 0 chr1 24689878 24690182 -217974171 - AluSx SINE Alu -8 304 1 2336 31 0 14 chr1 24690224 24690540 -217973813 - AluY SINE Alu 0 313 2 26 30 0 0 chr1 24690653 24690686 -217973667 + AT_rich Low_complexity Low_complexity 1 33 0 192 77 0 0 chr1 24690852 24690878 -217973475 + (ATG)n Simple_repeat Simple_repeat 3 28 0 363 286 0 0 chr1 24690879 24690963 -217973390 - MIR SINE MIR -21 241 158 1099 185 0 18 chr1 24690988 24691215 -217973138 - AluJo SINE Alu -1 311 89 672 147 6 103 chr1 24691227 24691280 -217973073 - L1MB7 LINE L1 -19 6165 6108 2178 105 3 16 chr1 24691280 24691593 -217972760 + AluSx SINE Alu 1 309 -3 672 147 6 103 chr1 24691593 24691695 -217972658 - L1MB7 LINE L1 -76 6108 6025 468 200 124 0 chr1 24691695 24691800 -217972553 - MIR SINE MIR -99 163 46 332 109 0 0 chr1 24691866 24691912 -217972441 - MER58 DNA MER1_type -18 2402 2357 207 316 13 13 chr1 24691967 24692046 -217972307 + L3 LINE CR1 1359 1437 -140 823 179 26 6 chr1 24692346 24692502 -217971851 + LTR53 LTR ERVL 195 353 -166 1060 149 0 28 chr1 24692510 24692740 -217971613 - FRAM SINE Alu 0 225 1 280 267 117 25 chr1 24692990 24693110 -217971243 + MLT1K LTR MaLR 456 586 -2 1293 196 43 63 chr1 24693314 24693442 -217970911 + AluJo SINE Alu 1 130 -172 1893 114 0 7 chr1 24693442 24693713 -217970640 + AluSx SINE Alu 22 290 -22 1293 196 43 63 chr1 24693713 24693885 -217970468 + AluJo SINE Alu 130 295 -7 1912 134 0 23 chr1 24694160 24694295 -217970058 + AluSx SINE Alu 1 138 -174 2223 108 0 0 chr1 24694295 24694602 -217969751 + AluSx SINE Alu 1 307 -5 1912 134 0 23 chr1 24694602 24694771 -217969582 + AluSx SINE Alu 138 298 -14 36 19 0 19 chr1 24694771 24694782 -217969571 + AT_rich Low_complexity Low_complexity 1 11 -42 2116 109 0 6 chr1 24694782 24695094 -217969259 + AluSq SINE Alu 1 310 -3 36 19 0 19 chr1 24695094 24695136 -217969217 + AT_rich Low_complexity Low_complexity 11 53 0 1669 182 43 29 chr1 24695207 24695624 -217968729 + Charlie4a DNA MER1_type 21 443 -65 1486 126 0 5 chr1 24695636 24695850 -217968503 + AluSx SINE Alu 3 215 -97 1115 113 19 0 chr1 24695852 24696012 -217968341 + L1PA16 LINE L1 5614 5776 -390 1943 119 7 13 chr1 24696015 24696317 -217968036 + AluSx SINE Alu 1 300 -12 2221 114 6 15 chr1 24696317 24696659 -217967694 + L1PA16 LINE L1 5828 6166 0 1760 161 3 3 chr1 24696664 24696962 -217967391 + AluJb SINE Alu 1 298 -14 1841 152 3 0 chr1 24696964 24697280 -217967073 + AluSx SINE Alu 1 312 0 1632 169 0 13 chr1 24698043 24698345 -217966008 + AluJb SINE Alu 2 299 -13 391 214 233 0 chr1 24698561 24698664 -217965689 - MER5A DNA MER1_type 0 189 63 2701 150 116 43 chr1 24698674 24699279 -217965074 - L1MB7 LINE L1 0 6184 5536 864 199 62 28 chr1 24700725 24700862 -217963491 - MLT1F1 LTR MaLR -8 559 428 1786 127 0 34 chr1 24700862 24701153 -217963200 + AluJo SINE Alu 1 281 -31 864 199 62 28 chr1 24701153 24701444 -217962909 - MLT1F1 LTR MaLR -139 428 3 720 213 57 0 chr1 24701703 24701844 -217962509 + FAM SINE Alu 1 149 -36 2327 81 3 0 chr1 24701846 24702143 -217962210 - AluSx SINE Alu -14 298 1 366 254 127 0 chr1 24702210 24702320 -217962033 - L2 LINE L2 -459 2855 2732 939 264 137 48 chr1 24702330 24702746 -217961607 + L2 LINE L2 2859 3311 -2 2475 61 0 0 chr1 24702965 24703259 -217961094 + AluY SINE Alu 1 294 -17 533 205 105 12 chr1 24703286 24703397 -217960956 - L1MC4 LINE L1 -2 8040 7941 273 98 0 0 chr1 24703397 24703438 -217960915 + (TG)n Simple_repeat Simple_repeat 2 42 0 533 205 105 12 chr1 24703438 24703587 -217960766 - L1MC4 LINE L1 -101 7941 7693 499 97 28 0 chr1 24703594 24703666 -217960687 - AluSp/q SINE Alu -8 305 232 1690 164 4 0 chr1 24703687 24703961 -217960392 - AluJo SINE Alu -37 275 1 401 219 172 23 chr1 24703972 24704100 -217960253 - L1MC4 LINE L1 -314 7728 7582 1091 145 257 8 chr1 24704101 24704342 -217960011 - AluSg1 SINE Alu -8 301 1 879 150 123 0 chr1 24704344 24704566 -217959787 - L1MC4 LINE L1 -749 7293 6976 1807 153 17 11 chr1 24704983 24705270 -217959083 + AluJo SINE Alu 1 289 -23 866 202 109 54 chr1 24705329 24705698 -217958655 + MER31-int LTR ERV1 3650 4107 -829 2292 105 0 0 chr1 24705698 24705993 -217958360 - AluSg SINE Alu -15 295 1 2573 43 0 0 chr1 24705999 24706299 -217958054 - AluYa5 SINE Alu -11 300 1 2908 106 2 54 chr1 24706325 24706769 -217957584 - MER1A DNA MER1_type -108 421 1 217 250 0 0 chr1 24706858 24706910 -217957443 + MIR3 SINE MIR 151 202 -6 2463 56 0 7 chr1 24706917 24707221 -217957132 + AluY SINE Alu 1 302 -9 2504 73 0 0 chr1 24707600 24707901 -217956452 + AluY SINE Alu 1 301 -10 2219 117 0 0 chr1 24707922 24708221 -217956132 + AluSx SINE Alu 1 299 -13 2025 138 6 3 chr1 24708923 24709235 -217955118 - AluSq SINE Alu 0 313 1 681 126 189 0 chr1 24709266 24709377 -217954976 - FLAM_C SINE Alu -10 133 2 2176 105 13 19 chr1 24709401 24709716 -217954637 - AluSq SINE Alu 0 313 1 21 36 0 0 chr1 24709719 24709747 -217954606 + AT_rich Low_complexity Low_complexity 1 28 0 182 171 24 0 chr1 24709964 24710005 -217954348 + CT-rich Low_complexity Low_complexity 2 43 0 1442 118 0 0 chr1 24710012 24710216 -217954137 - AluSg/x SINE Alu -37 275 72 1632 151 9 89 chr1 24710274 24710457 -217953896 - AluJo SINE Alu -1 311 166 1757 89 12 32 chr1 24710457 24710703 -217953650 - AluSp SINE Alu -38 275 35 1632 151 9 89 chr1 24710703 24710857 -217953496 - AluJo SINE Alu -146 166 1 2343 97 0 0 chr1 24711583 24711882 -217952471 - AluSg SINE Alu -11 299 1 1646 187 17 17 chr1 24712206 24712500 -217951853 + AluJb SINE Alu 1 294 -18 1597 192 11 11 chr1 24713019 24713300 -217951053 - AluJo SINE Alu -31 281 1 2147 115 0 0 chr1 24713337 24713649 -217950704 + AluSx SINE Alu 1 312 0 792 294 108 51 chr1 24713715 24714124 -217950229 + L2 LINE L2 2551 2935 -378 830 143 0 30 chr1 24714124 24714257 -217950096 - FLAM_C SINE Alu 0 133 5 792 294 108 51 chr1 24714257 24714418 -217949935 + L2 LINE L2 2935 3085 -228 1944 138 0 7 chr1 24714418 24714731 -217949622 - AluSx SINE Alu 0 311 1 792 294 108 51 chr1 24714731 24714844 -217949509 + L2 LINE L2 3085 3276 -37 2211 114 7 0 chr1 24715337 24715634 -217948719 - AluSq SINE Alu -14 299 1 1480 190 0 46 chr1 24715965 24716270 -217948083 + AluJo SINE Alu 1 291 -21 2528 50 0 0 chr1 24716983 24717281 -217947072 - AluY SINE Alu -13 298 1 25 83 0 0 chr1 24717364 24717424 -217946929 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr1 24717467 24717488 -217946865 + AT_rich Low_complexity Low_complexity 1 21 0 2293 75 0 0 chr1 24717548 24717853 -217946500 - AluY SINE Alu 0 305 1 36 40 0 0 chr1 24717920 24717970 -217946383 + AT_rich Low_complexity Low_complexity 1 50 0 806 180 0 22 chr1 24717970 24718109 -217946244 - AluJb SINE Alu -176 136 1 2346 104 0 0 chr1 24719604 24719901 -217944452 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr1 24719935 24719973 -217944380 + AT_rich Low_complexity Low_complexity 1 38 0 342 326 98 36 chr1 24720767 24720960 -217943393 + L2 LINE L2 294 498 -2816 2357 68 14 0 chr1 24720962 24721255 -217943098 - AluSp SINE Alu -16 297 1 312 270 115 0 chr1 24721300 24721448 -217942905 + MER112 DNA MER1_type 37 201 -59 380 324 80 33 chr1 24721481 24721842 -217942511 + L2 LINE L2 505 882 -2432 1058 323 145 18 chr1 24721946 24723021 -217941332 - L2 LINE L2 0 3313 2107 2174 110 10 0 chr1 24724136 24724437 -217939916 - AluSg SINE Alu -6 304 1 2273 82 7 0 chr1 24724671 24724963 -217939390 - AluY SINE Alu -17 294 1 836 164 21 0 chr1 24725806 24725946 -217938407 - FAM SINE Alu -7 42 1 339 177 25 25 chr1 24726692 24726771 -217937582 - HsTC2 DNA Tc2 -36 1862 1784 2493 87 0 0 chr1 24726830 24727142 -217937211 - AluSx SINE Alu 0 312 1 1604 228 97 28 chr1 24727143 24727648 -217936705 - L1MC4a LINE L1 -1979 5829 5290 236 261 43 0 chr1 24727890 24727959 -217936394 - L1MC4a LINE L1 -1133 5013 4942 200 194 0 0 chr1 24731277 24731313 -217933040 + GA-rich Low_complexity Low_complexity 3 38 0 24 53 0 0 chr1 24732579 24732617 -217931736 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr1 24734767 24734794 -217929559 + AT_rich Low_complexity Low_complexity 1 27 0 266 0 29 0 chr1 24735518 24735552 -217928801 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr1 24737421 24737445 -217926908 + AT_rich Low_complexity Low_complexity 1 24 0 1782 158 3 3 chr1 24738909 24739194 -217925159 + AluJo SINE Alu 9 293 -19 2362 52 0 14 chr1 24739540 24739851 -217924502 - AluY SINE Alu 0 307 1 401 255 248 7 chr1 24740435 24740580 -217923773 - MER5A DNA MER1_type -1 188 9 964 130 338 14 chr1 24741052 24741268 -217923085 + AluSg1 SINE Alu 1 286 -23 214 234 21 0 chr1 24741652 24741699 -217922654 - L2 LINE L2 -18 3295 3248 1649 91 159 29 chr1 24741989 24742265 -217922088 - AluSx SINE Alu 0 312 1 1964 131 7 3 chr1 24742294 24742592 -217921761 + AluSx SINE Alu 1 299 -13 406 262 56 94 chr1 24742852 24743085 -217921268 - MIR SINE MIR -27 235 12 1943 150 7 3 chr1 24743331 24743624 -217920729 + AluJb SINE Alu 1 294 -18 251 189 0 0 chr1 24743682 24743735 -217920618 + FLAM SINE Alu 81 133 0 2016 128 3 0 chr1 24743787 24744076 -217920277 - AluSx SINE Alu -16 296 7 2194 92 7 7 chr1 24744308 24744602 -217919751 - AluSx SINE Alu -15 297 4 2092 146 0 3 chr1 24744677 24744978 -217919375 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr1 24745946 24745974 -217918379 + AT_rich Low_complexity Low_complexity 1 28 0 1630 168 42 25 chr1 24746530 24746816 -217917537 + AluJb SINE Alu 1 291 -21 271 313 212 11 chr1 24746915 24747094 -217917259 - MIR SINE MIR -16 246 32 785 126 0 77 chr1 24747099 24747242 -217917111 - FLAM_C SINE Alu -1 132 1 2295 101 0 10 chr1 24748042 24748349 -217916004 + AluSq SINE Alu 1 304 -9 1920 118 0 81 chr1 24748416 24748739 -217915614 + AluSg SINE Alu 1 297 -13 902 102 0 0 chr1 24748740 24748858 -217915495 + AluSq SINE Alu 133 250 -63 198 171 0 0 chr1 24748858 24748899 -217915454 + A-rich Low_complexity Low_complexity 1 41 0 1848 121 26 18 chr1 24748954 24749227 -217915126 + L1PB4 LINE L1 5877 6151 -5 218 303 65 39 chr1 24749326 24749481 -217914872 + L2 LINE L2 2722 2880 -434 665 243 151 37 chr1 24750381 24750599 -217913754 - MIR SINE MIR -15 247 5 277 226 0 0 chr1 24751348 24751401 -217912952 - MIR SINE MIR -150 112 60 2451 66 3 7 chr1 24751563 24751865 -217912488 - AluY SINE Alu -10 301 1 852 135 7 28 chr1 24751865 24752006 -217912347 - AluSq/x SINE Alu -174 138 1 1905 137 0 7 chr1 24752144 24752428 -217911925 - AluSx SINE Alu -30 282 1 187 259 49 37 chr1 24753043 24753124 -217911229 - L2 LINE L2 0 3272 3191 310 269 90 0 chr1 24753563 24753641 -217910712 - L2 LINE L2 -50 3263 3179 465 188 116 22 chr1 24754765 24754903 -217909450 - MIR SINE MIR -12 250 100 21 0 0 0 chr1 24755113 24755134 -217909219 + AT_rich Low_complexity Low_complexity 1 21 0 261 263 0 0 chr1 24755661 24755718 -217908635 - MIR SINE MIR -2 260 204 306 132 0 38 chr1 24755721 24755774 -217908579 + AluJ/FLAM SINE Alu 14 64 -238 243 191 64 0 chr1 24755829 24755876 -217908477 - MIR SINE MIR -119 143 94 2045 151 0 0 chr1 24758244 24758555 -217905798 - AluSx SINE Alu -1 311 1 1019 141 18 0 chr1 24760556 24760726 -217903627 - AluSc SINE Alu -5 304 132 24 53 0 0 chr1 24760895 24760933 -217903420 + AT_rich Low_complexity Low_complexity 1 38 0 860 174 68 6 chr1 24761185 24761346 -217903007 + FAM SINE Alu 1 171 -4 300 137 20 0 chr1 24812299 24812350 -217852003 - Alu SINE Alu -250 52 1 736 86 0 31 chr1 24812351 24812479 -217851874 - Tigger4(Zombi) DNA MER2_type -2019 712 589 1261 92 0 71 chr1 24812479 24812675 -217851678 - AluSq SINE Alu -3 310 129 2414 97 0 3 chr1 24812683 24812994 -217851359 - AluSx SINE Alu -2 310 1 805 126 30 0 chr1 24812994 24813129 -217851224 - Tigger4(Zombi) DNA MER2_type -2134 597 459 2229 66 7 4 chr1 24813129 24813402 -217850951 - AluSx SINE Alu -4 308 35 222 282 118 12 chr1 24813555 24813640 -217850713 + L2 LINE L2 3141 3234 -38 187 310 147 31 chr1 24813716 24813845 -217850508 + MER5B DNA MER1_type 35 178 0 260 206 16 32 chr1 24813908 24813971 -217850382 - MER5A DNA MER1_type 0 189 128 1748 157 65 7 chr1 24814002 24814328 -217850025 - AluJo SINE Alu 0 343 1 213 202 64 0 chr1 24814328 24814396 -217849957 - MER5A DNA MER1_type -114 75 4 1536 116 0 5 chr1 24814920 24815135 -217849218 - AluSg/x SINE Alu -11 301 88 200 150 0 50 chr1 24815148 24815188 -217849165 - MER5A DNA MER1_type -109 80 43 529 136 34 0 chr1 24815296 24815384 -217848969 + AluSg/x SINE Alu 206 296 -13 329 293 10 20 chr1 24815405 24815504 -217848849 - MIR SINE MIR -131 131 34 248 338 120 0 chr1 24816172 24816305 -217848048 + MIR SINE MIR 112 260 -2 302 274 88 44 chr1 24816387 24816500 -217847853 - MIR3 SINE MIR -37 171 54 2020 101 8 4 chr1 24816535 24816803 -217847550 - AluSx SINE Alu 0 312 44 1248 92 0 6 chr1 24816903 24817066 -217847287 - AluSq SINE Alu -151 162 1 2267 212 53 76 chr1 24817070 24817755 -217846598 - L1MEc LINE L1 -5721 675 7 2451 78 3 0 chr1 24817778 24818074 -217846279 + AluSp SINE Alu 1 297 -16 2022 169 3 3 chr1 24818077 24818431 -217845922 - MLT1A1 LTR MaLR 0 365 12 3139 194 26 81 chr1 24818883 24818983 -217845370 - L1MD2 LINE L1 -10 6349 6245 2276 116 0 0 chr1 24818983 24819276 -217845077 - AluSx SINE Alu -9 303 11 3139 194 26 81 chr1 24819276 24819868 -217844485 - L1MD2 LINE L1 -114 6245 5622 2415 64 3 0 chr1 24819868 24820165 -217844188 + AluY SINE Alu 1 298 -13 3139 194 26 81 chr1 24820165 24820281 -217844072 - L1MD2 LINE L1 -737 5622 5501 2150 117 0 3 chr1 24820281 24820572 -217843781 + AluSg SINE Alu 1 290 -20 3139 194 26 81 chr1 24820572 24820613 -217843740 - L1MD2 LINE L1 -858 5501 5543 651 64 27 0 chr1 24820613 24820723 -217843630 + (TA)n Simple_repeat Simple_repeat 2 114 0 1633 119 8 25 chr1 24820814 24821057 -217843296 + AluSq SINE Alu 1 239 -74 289 301 177 8 chr1 24821520 24821680 -217842673 + MIR SINE MIR 3 185 -63 212 369 137 6 chr1 24821917 24822085 -217842268 - MIR SINE MIR -14 248 59 * 263 285 135 36 chr1 24822054 24822140 -217842213 - L2 LINE L2 -453 2861 2785 791 182 0 8 chr1 24822140 24822272 -217842081 - FLAM_C SINE Alu -1 132 2 263 285 135 36 chr1 24822272 24822378 -217841975 - L2 LINE L2 -529 2785 2650 628 257 38 35 chr1 24822497 24822725 -217841628 + MIR SINE MIR 14 247 -15 319 294 59 29 chr1 24823189 24823291 -217841062 + L2 LINE L2 3208 3312 -1 225 65 0 0 chr1 24823354 24823385 -217840968 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 445 294 27 14 chr1 24823389 24823535 -217840818 + MIR SINE MIR 82 229 -33 506 346 80 5 chr1 24823640 24823828 -217840525 + MIR SINE MIR 28 229 -33 533 293 28 11 chr1 24823896 24824077 -217840276 + MIR3 SINE MIR 10 193 -15 199 226 294 10 chr1 24824431 24824533 -217839820 - MIR SINE MIR -62 146 16 2585 60 0 0 chr1 24824558 24824860 -217839493 - AluY SINE Alu -9 302 1 225 0 0 0 chr1 24825020 24825045 -217839308 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 354 237 41 41 chr1 24825047 24825144 -217839209 - L2 LINE L2 -10 3303 3207 407 162 8 2 chr1 24825148 24825230 -217839123 + MSTB LTR MaLR 342 424 -2 882 144 8 0 chr1 24825232 24825364 -217838989 + FLAM_C SINE Alu 1 133 0 2216 103 0 56 chr1 24825696 24826017 -217838336 - AluSx SINE Alu -9 303 1 342 231 77 46 chr1 24826018 24826148 -217838205 + MIR SINE MIR 72 205 -57 2579 70 0 3 chr1 24826454 24826766 -217837587 - AluY SINE Alu 0 311 1 2019 129 14 0 chr1 24826771 24827058 -217837295 - AluSg SINE Alu -19 291 1 438 262 99 35 chr1 24827309 24827368 -217836985 + MIR SINE MIR 20 74 -188 1963 148 37 7 chr1 24827368 24827666 -217836687 + AluJb SINE Alu 1 307 -5 2140 139 3 0 chr1 24827667 24827968 -217836385 + AluSx SINE Alu 1 302 -10 2201 122 0 16 chr1 24827977 24828281 -217836072 + AluSx SINE Alu 1 299 -13 438 262 99 35 chr1 24828281 24828381 -217835972 + MIR SINE MIR 81 202 -60 260 132 226 0 chr1 24828559 24828612 -217835741 - L1MC4 LINE L1 -25 8017 7953 750 257 0 0 chr1 24828649 24828793 -217835560 - FRAM SINE Alu -37 139 1 1387 146 75 50 chr1 24828814 24829135 -217835218 - LTR47A LTR ERVL 0 452 124 620 96 133 59 chr1 24829112 24829247 -217835106 - LTR47A LTR ERVL -257 195 51 * 749 120 137 0 chr1 24829247 24829364 -217834989 + FLAM_C SINE Alu 1 133 -10 338 164 0 0 chr1 24829364 24829419 -217834934 - LTR47A LTR ERVL -397 55 1 1019 202 121 10 chr1 24829419 24829716 -217834637 - L1MC4 LINE L1 -100 7942 7613 2466 96 3 3 chr1 24829721 24830034 -217834319 - AluSq SINE Alu 0 313 1 724 113 50 78 chr1 24831072 24831213 -217833140 + AluJb SINE Alu 2 138 -174 628 197 215 72 chr1 24831224 24831600 -217832753 - LTR33 LTR ERVL 0 521 92 405 246 105 26 chr1 24831751 24831865 -217832488 - MIR3 SINE MIR -73 135 13 1928 186 122 39 chr1 24832296 24832806 -217831547 - MER74B LTR ERVL -15 607 56 455 327 22 88 chr1 24832810 24832921 -217831432 + L1MC4a LINE L1 5757 5874 -1934 1448 159 132 12 chr1 24832921 24833199 -217831154 - AluJb SINE Alu 0 302 1 455 327 22 88 chr1 24833199 24833405 -217830948 + L1MC4a LINE L1 5874 6053 -1755 364 326 126 20 chr1 24833587 24833906 -217830447 - L2 LINE L2 -189 3083 2733 914 200 40 6 chr1 24834058 24834233 -217830120 - MER5A DNA MER1_type -8 181 1 2474 86 0 0 chr1 24834268 24834581 -217829772 - AluSq SINE Alu 0 313 1 485 246 287 31 chr1 24834583 24834872 -217829481 + L2 LINE L2 2926 3288 -25 1670 66 24 5 chr1 24835662 24835875 -217828478 + AluY SINE Alu 87 303 -8 1485 98 94 18 chr1 24836029 24836125 -217828228 + AluSx SINE Alu 9 96 -216 225 0 0 0 chr1 24836125 24836150 -217828203 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1485 98 94 18 chr1 24836150 24836277 -217828076 + AluSx SINE Alu 96 249 -63 188 381 0 12 chr1 24836295 24836379 -217827974 - MIR SINE MIR -93 115 33 424 264 109 0 chr1 24836429 24836539 -217827814 + L2 LINE L2 3191 3312 -1 260 349 91 23 chr1 24836627 24836802 -217827551 - L2 LINE L2 -171 3101 2915 * 301 367 18 9 chr1 24836786 24836895 -217827458 - MIR SINE MIR -141 121 12 414 269 129 6 chr1 24837030 24837201 -217827152 - L2 LINE L2 -6 3266 3075 2244 95 0 3 chr1 24837792 24838075 -217826278 - AluSx SINE Alu -19 293 12 287 222 259 0 chr1 24838084 24838219 -217826134 - L1MC4a LINE L1 -1868 5940 5771 573 229 62 109 chr1 24838343 24838427 -217825926 - MIR SINE MIR -6 256 170 548 179 145 8 chr1 24838427 24838544 -217825809 + FLAM_A SINE Alu 1 133 0 573 229 62 109 chr1 24838544 24838669 -217825684 - MIR SINE MIR -92 170 57 2429 88 0 0 chr1 24838727 24839021 -217825332 - AluSq SINE Alu -19 294 1 2166 121 0 0 chr1 24839237 24839547 -217824806 - AluSx SINE Alu 0 310 1 711 250 105 14 chr1 24839943 24840187 -217824166 + MIR SINE MIR 1 261 -1 1273 152 9 31 chr1 24840894 24841118 -217823235 - AluJo SINE Alu -9 303 85 2426 97 0 0 chr1 24841118 24841417 -217822936 - AluSx SINE Alu -13 299 1 1018 291 21 8 chr1 24841653 24842028 -217822325 - L1MEc LINE L1 -5020 1376 997 771 172 0 0 chr1 24842031 24842147 -217822206 + FLAM_C SINE Alu 2 117 -26 249 139 0 0 chr1 24842256 24842299 -217822054 + (T)n Simple_repeat Simple_repeat 1 43 0 1171 171 8 16 chr1 24842324 24842575 -217821778 - L1MEc LINE L1 -5474 922 674 2337 56 45 0 chr1 24842580 24842867 -217821486 - AluY SINE Alu -9 302 3 234 0 0 0 chr1 24842869 24842895 -217821458 + (T)n Simple_repeat Simple_repeat 1 26 0 2675 92 19 5 chr1 24843005 24843375 -217820978 - THE1C LTR MaLR 0 375 1 241 114 0 0 chr1 24843565 24843600 -217820753 + U2 snRNA snRNA 1 35 -153 400 252 219 32 chr1 24844623 24844869 -217819484 + L2 LINE L2 3008 3299 -14 769 174 0 54 chr1 24844958 24845107 -217819246 - FLAM_C SINE Alu 0 143 3 1486 173 96 7 chr1 24845243 24845393 -217818960 - AluJb SINE Alu -17 295 160 821 19 0 19 chr1 24845393 24845497 -217818856 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 1486 173 96 7 chr1 24845497 24845617 -217818736 - AluJb SINE Alu -152 160 1 307 223 262 0 chr1 24845660 24845763 -217818590 + MIR SINE MIR 85 214 -48 180 270 117 54 chr1 24846383 24846494 -217817859 + L2 LINE L2 3147 3264 -8 619 190 196 28 chr1 24846506 24846685 -217817668 + MER3 DNA MER1_type 1 209 0 2364 99 20 11 chr1 24847401 24847754 -217816599 + THE1C LTR MaLR 3 358 -17 2303 97 7 0 chr1 24847849 24848138 -217816215 - AluSg SINE Alu -19 291 1 22 0 0 0 chr1 24848240 24848262 -217816091 + AT_rich Low_complexity Low_complexity 1 22 0 1717 186 0 30 chr1 24848262 24848558 -217815795 - AluJb SINE Alu -24 288 2 654 142 30 0 chr1 24848614 24848644 -217815709 + CT-rich Low_complexity Low_complexity 1 29 -109 2541 63 0 19 chr1 24848644 24848960 -217815393 - AluY SINE Alu -1 310 1 654 142 30 0 chr1 24848960 24849063 -217815290 + CT-rich Low_complexity Low_complexity 29 138 0 2082 144 0 16 chr1 24849063 24849376 -217814977 - AluSx SINE Alu -4 308 1 406 294 0 0 chr1 24849486 24849588 -217814765 - MIR SINE MIR 0 262 161 1072 142 5 63 chr1 24849592 24849780 -217814573 - AluSg/x SINE Alu 0 310 133 1414 166 46 89 chr1 24849780 24849989 -217814364 - AluJb SINE Alu -1 311 119 423 0 0 0 chr1 24849989 24850036 -217814317 + (TG)n Simple_repeat Simple_repeat 2 48 0 1414 166 46 89 chr1 24850036 24850151 -217814202 - AluJb SINE Alu -193 119 1 1072 142 5 63 chr1 24850151 24850167 -217814186 - AluSg/x SINE Alu -177 133 118 539 274 89 0 chr1 24850210 24850345 -217814008 - MIR SINE MIR -110 152 6 217 265 29 15 chr1 24850562 24850630 -217813723 - MIR SINE MIR -102 106 38 1385 173 113 13 chr1 24850680 24850980 -217813373 + Charlie1b DNA MER1_type 2 331 -192 2171 95 43 13 chr1 24850983 24851118 -217813235 + AluSp SINE Alu 1 131 -182 2457 54 6 50 chr1 24851118 24851435 -217812918 + AluY SINE Alu 1 303 -8 2171 95 43 13 chr1 24851435 24851603 -217812750 + AluSp SINE Alu 131 313 0 430 304 108 13 chr1 24851958 24852116 -217812237 + MIR SINE MIR 20 192 -70 2095 130 14 0 chr1 24852287 24852579 -217811774 + AluSx SINE Alu 3 298 -14 2372 105 0 3 chr1 24852579 24852892 -217811461 + AluSx SINE Alu 1 312 0 382 262 14 64 chr1 24852984 24853125 -217811228 - MER94 DNA DNA 0 134 1 700 174 72 48 chr1 24853416 24853583 -217810770 - MER45A DNA AcHobo -7 171 1 1705 183 15 80 chr1 24853878 24854278 -217810075 + MLT1A2 LTR MaLR 1 374 0 272 314 110 63 chr1 24854387 24854686 -217809667 + L2 LINE L2 2918 3230 -42 265 307 13 0 chr1 24854926 24855001 -217809352 - L2 LINE L2 0 3313 3238 252 298 107 16 chr1 24855079 24855200 -217809153 + MIR SINE MIR 12 143 -119 678 273 96 10 chr1 24855679 24855916 -217808437 - MIR SINE MIR 0 262 7 259 94 57 38 chr1 24855920 24855973 -217808380 + MIR SINE MIR 108 161 -101 519 306 12 12 chr1 24856068 24856228 -217808125 + MIR SINE MIR 31 190 -72 466 277 51 0 chr1 24856476 24856618 -217807735 + MIR SINE MIR 6 151 -100 27 29 0 0 chr1 24857019 24857053 -217807300 + AT_rich Low_complexity Low_complexity 1 34 0 2346 115 0 0 chr1 24857061 24857374 -217806979 + AluSq SINE Alu 1 313 0 511 269 39 85 chr1 24857559 24857709 -217806644 - L1ME LINE L1 -460 5661 5526 2570 62 0 3 chr1 24857709 24858013 -217806340 - AluY SINE Alu -7 304 2 511 269 39 85 chr1 24858013 24858122 -217806231 - L1ME LINE L1 -595 5526 5414 1281 133 121 64 chr1 24858144 24858257 -217806096 - AluJo SINE Alu -39 273 168 1615 104 135 56 chr1 24858257 24858406 -217805947 - AluSx SINE Alu -1 311 175 2205 108 0 0 chr1 24858406 24858694 -217805659 - AluY SINE Alu -23 288 1 1615 104 135 56 chr1 24858694 24858832 -217805521 - AluSx SINE Alu -137 175 1 2187 117 24 0 chr1 24858834 24859125 -217805228 - AluSp SINE Alu -15 298 1 1281 133 121 64 chr1 24859125 24859257 -217805096 - AluJo SINE Alu -144 168 11 2231 91 10 10 chr1 24859293 24859590 -217804763 - AluSx SINE Alu -15 297 1 596 304 34 10 chr1 24860013 24860220 -217804133 + MIR SINE MIR 46 257 -5 180 0 0 0 chr1 24860279 24860299 -217804054 + (TG)n Simple_repeat Simple_repeat 2 21 0 410 283 49 44 chr1 24860911 24861093 -217803260 - MIR3 SINE MIR -3 205 23 789 127 8 15 chr1 24861158 24861292 -217803061 + FLAM_A SINE Alu 1 133 0 395 241 26 52 chr1 24861302 24861418 -217802935 + MER3 DNA MER1_type 12 124 -85 2381 106 3 0 chr1 24861422 24861725 -217802628 - AluSx SINE Alu -8 304 1 221 309 0 0 chr1 24861726 24861781 -217802572 - MIR SINE MIR -117 145 91 217 303 0 57 chr1 24861828 24861950 -217802403 + G-rich Low_complexity Low_complexity 6 120 0 481 183 58 10 chr1 24862314 24862418 -217801935 + MLT1C LTR MaLR 359 467 0 667 265 48 0 chr1 24862465 24862654 -217801699 + L1ME3A LINE L1 5973 6170 0 2209 127 3 10 chr1 24862667 24862981 -217801372 + AluSx SINE Alu 1 312 0 1132 161 60 14 chr1 24863064 24863282 -217801071 - MLT1A2 LTR MaLR -2 372 145 232 211 77 0 chr1 24863368 24863420 -217800933 - MIR SINE MIR -93 169 114 204 89 22 111 chr1 24864160 24864205 -217800148 + MER91B DNA MER1_type 24 64 -126 287 282 19 48 chr1 24864795 24864898 -217799455 - L2 LINE L2 -217 3055 2956 363 296 59 32 chr1 24865141 24865327 -217799026 + MIR SINE MIR 35 225 -37 292 309 7 47 chr1 24865839 24865988 -217798365 + MIR SINE MIR 50 192 -70 2326 94 17 0 chr1 24866189 24866488 -217797865 + AluSg SINE Alu 1 304 -6 2340 68 4 0 chr1 24866488 24866767 -217797586 + AluY SINE Alu 1 281 -30 192 40 0 0 chr1 24866768 24866793 -217797560 + (TA)n Simple_repeat Simple_repeat 1 25 0 368 115 33 0 chr1 24866797 24866858 -217797495 + MIR SINE MIR 73 135 -127 382 247 0 0 chr1 24867139 24867236 -217797117 - L1MB8 LINE L1 -2 6176 6080 281 303 0 0 chr1 24867442 24867508 -217796845 + L2 LINE L2 3241 3306 -7 2297 99 3 7 chr1 24867508 24867811 -217796542 + AluSx SINE Alu 1 302 -10 216 67 0 0 chr1 24867999 24868029 -217796324 + (T)n Simple_repeat Simple_repeat 1 30 0 724 207 35 0 chr1 24868326 24868471 -217795882 + MIR SINE MIR 107 256 -6 445 280 140 33 chr1 24868873 24869338 -217795015 + L2 LINE L2 2740 3252 -61 1146 139 41 0 chr1 24869571 24869743 -217794610 - AluSg/x SINE Alu 0 312 134 2507 73 0 0 chr1 24869743 24870046 -217794307 - AluY SINE Alu -8 303 1 24 0 0 0 chr1 24870047 24870071 -217794282 + AT_rich Low_complexity Low_complexity 1 24 0 218 310 17 78 chr1 24870162 24870278 -217794075 - MIR SINE MIR -65 197 89 252 237 40 13 chr1 24870354 24870430 -217793923 + L2 LINE L2 3195 3272 0 334 311 43 32 chr1 24870763 24870816 -217793537 - L1ME4a LINE L1 0 6121 6070 897 171 32 69 chr1 24870816 24870922 -217793431 - MER3 DNA MER1_type 0 209 114 2129 137 0 3 chr1 24870922 24871222 -217793131 - AluJb SINE Alu -13 299 1 897 171 32 69 chr1 24871222 24871332 -217793021 - MER3 DNA MER1_type -95 114 1 334 311 43 32 chr1 24871332 24871555 -217792798 - L1ME4a LINE L1 -51 6070 5842 297 211 39 19 chr1 24871736 24871840 -217792513 - HAL1b LINE L1 -1 1347 1242 2388 69 0 0 chr1 24871858 24872134 -217792219 - AluSx SINE Alu -15 297 22 195 184 0 0 chr1 24872157 24872195 -217792158 + CT-rich Low_complexity Low_complexity 1 38 0 1752 185 24 0 chr1 24872197 24872489 -217791864 - AluJo SINE Alu -13 299 1 2044 123 10 29 chr1 24872492 24872801 -217791552 - AluJb SINE Alu -9 303 1 686 297 121 34 chr1 24872893 24872998 -217791355 - L1ME4a LINE L1 -116 6005 5911 2318 114 0 0 chr1 24872998 24873296 -217791057 - AluSx SINE Alu -14 298 1 686 297 121 34 chr1 24873296 24873661 -217790692 - L1ME4a LINE L1 -210 5911 5494 1608 188 7 7 chr1 24873663 24873945 -217790408 - AluJb SINE Alu -30 282 1 468 0 0 0 chr1 24873953 24874005 -217790348 + (TTA)n Simple_repeat Simple_repeat 2 53 0 305 98 0 0 chr1 24874008 24874049 -217790304 - FAM SINE Alu -19 156 116 437 255 155 75 chr1 24874084 24874433 -217789920 - L2 LINE L2 -1 3312 2936 1833 133 61 27 chr1 24874537 24874830 -217789523 - AluJo SINE Alu -9 303 1 216 255 0 20 chr1 24875038 24875089 -217789264 - MIR SINE MIR -142 66 17 268 140 60 0 chr1 24875739 24875789 -217788564 - L2 LINE L2 0 3313 3261 349 352 21 7 chr1 24875919 24876061 -217788292 + MIR SINE MIR 39 182 -80 1830 69 4 4 chr1 24877546 24877777 -217786576 - AluSg/x SINE Alu -6 303 73 2497 79 3 0 chr1 24879105 24879409 -217784944 + AluSq SINE Alu 1 305 -8 2414 92 3 0 chr1 24879424 24879729 -217784624 + AluSq SINE Alu 1 306 -7 459 265 77 12 chr1 24880439 24880609 -217783744 + MIR SINE MIR 72 252 -10 544 314 69 16 chr1 24881236 24881481 -217782872 - MIR SINE MIR -3 259 2 372 246 146 8 chr1 24881861 24881991 -217782362 + MIR SINE MIR 4 151 -111 1328 134 97 15 chr1 24882269 24882538 -217781815 + L1MB7 LINE L1 5874 6164 -20 269 279 110 15 chr1 24882597 24882733 -217781620 + MIR SINE MIR 112 260 -2 255 227 126 17 chr1 24883142 24883261 -217781092 - L1ME4a LINE L1 -2 6119 5988 2661 51 0 16 chr1 24883264 24883578 -217780775 - AluY SINE Alu -2 309 1 498 198 0 0 chr1 24885674 24885760 -217778593 + AluJ/FLAM SINE Alu 2 87 -225 2352 82 14 3 chr1 24885761 24886054 -217778299 + AluSq SINE Alu 3 298 -15 2185 116 0 17 chr1 24886071 24886364 -217777989 + AluSx SINE Alu 7 294 -18 323 269 77 51 chr1 24886529 24886685 -217777668 + L2 LINE L2 3020 3179 -93 372 298 62 36 chr1 24886729 24886954 -217777399 - L2 LINE L2 -188 3084 2854 2460 106 0 0 chr1 24887238 24887550 -217776803 + AluSx SINE Alu 1 312 0 209 224 69 0 chr1 24887758 24887816 -217776537 - L2 LINE L2 -4 3309 3248 246 264 0 69 chr1 24887999 24888086 -217776267 + L1ME LINE L1 5389 5469 -693 640 249 129 5 chr1 24888219 24888420 -217775933 + Charlie8 DNA MER1_type 1 226 -2191 324 257 160 35 chr1 24888658 24888802 -217775551 - MIR SINE MIR -64 198 37 715 263 43 5 chr1 24888802 24889011 -217775342 - MIR SINE MIR -5 257 41 438 264 0 9 chr1 24889259 24889395 -217774958 + AluSg/x SINE Alu 174 308 0 358 277 58 80 chr1 24889404 24889473 -217774880 - L2 LINE L2 -612 2702 2633 2159 67 50 21 chr1 24889473 24889756 -217774597 + AluY SINE Alu 2 292 -19 2567 42 10 0 chr1 24889758 24890065 -217774288 + AluY SINE Alu 1 310 -1 358 277 58 80 chr1 24890065 24890180 -217774173 - L2 LINE L2 -682 2632 2519 1044 270 83 33 chr1 24890182 24890760 -217773593 - L2 LINE L2 -1346 1968 1362 2204 128 0 0 chr1 24891081 24891379 -217772974 + AluSx SINE Alu 1 298 -14 319 291 86 0 chr1 24891567 24891684 -217772669 - MIR3 SINE MIR -1 207 81 1044 158 0 2 chr1 24891701 24892158 -217772195 + (CAT)n Simple_repeat Simple_repeat 1 456 0 282 241 69 11 chr1 24892206 24892293 -217772060 - MIR SINE MIR -70 192 101 771 270 58 50 chr1 24892518 24892556 -217771797 + L2 LINE L2 2677 2713 -600 2027 142 0 13 chr1 24892556 24892858 -217771495 + AluSx SINE Alu 1 298 -14 771 270 58 50 chr1 24892858 24892928 -217771425 + L2 LINE L2 2713 2781 -532 2411 72 0 30 chr1 24892928 24893232 -217771121 + AluY SINE Alu 1 295 -16 771 270 58 50 chr1 24893232 24893724 -217770629 + L2 LINE L2 2781 3280 -33 760 213 61 35 chr1 24893727 24893957 -217770396 - MIR SINE MIR -13 249 14 2181 146 0 9 chr1 24894025 24894340 -217770013 + AluSx SINE Alu 1 312 0 1509 289 59 24 chr1 24894482 24894606 -217769747 + L1ME3A LINE L1 5273 5391 -771 2233 91 37 10 chr1 24894606 24894730 -217769623 + AluSq SINE Alu 1 120 -193 2570 59 7 3 chr1 24894730 24895037 -217769316 + AluY SINE Alu 1 308 -3 2233 91 37 10 chr1 24895037 24895209 -217769144 + AluSq SINE Alu 120 305 -8 1509 289 59 24 chr1 24895209 24895741 -217768612 + L1ME3A LINE L1 5391 5952 -210 245 270 16 63 chr1 24895817 24895943 -217768410 + L1ME3A LINE L1 5963 6082 -88 2197 122 7 0 chr1 24896060 24896355 -217767998 + AluSq SINE Alu 1 297 -16 212 260 143 39 chr1 24896380 24896457 -217767896 - L2 LINE L2 -1 3271 3187 748 252 75 35 chr1 24896493 24896719 -217767634 + MIR SINE MIR 17 251 -11 1049 34 0 0 chr1 24896721 24896840 -217767513 + AluY SINE Alu 181 299 -12 284 231 22 55 chr1 24897696 24897787 -217766566 - MIR SINE MIR -58 204 117 333 359 38 16 chr1 24897890 24898074 -217766279 - MER5A DNA MER1_type 0 189 2 221 0 0 33 chr1 24898499 24898529 -217765824 + (CGG)n Simple_repeat Simple_repeat 2 30 0 321 203 54 14 chr1 24898809 24898883 -217765470 + MIR SINE MIR 94 170 -92 1312 94 0 28 chr1 24899753 24899933 -217764420 + AluSg/x SINE Alu 129 303 -7 333 295 90 30 chr1 24899965 24900072 -217764281 - L2 LINE L2 -521 2793 2694 2279 125 0 0 chr1 24900072 24900368 -217763985 + AluSx SINE Alu 1 296 -16 333 295 90 30 chr1 24900368 24900494 -217763859 - L2 LINE L2 -620 2694 2546 759 260 28 124 chr1 24900759 24900999 -217763354 - MLT1K LTR MaLR -8 580 403 2375 110 0 0 chr1 24900999 24901307 -217763046 + AluSx SINE Alu 1 308 -4 759 260 28 124 chr1 24901307 24901524 -217762829 - MLT1K LTR MaLR -185 403 167 279 277 32 32 chr1 24901924 24902018 -217762335 + MIR SINE MIR 120 213 -49 348 83 0 0 chr1 24902048 24902096 -217762257 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 250 290 165 67 chr1 24902097 24902321 -217762032 - L2 LINE L2 -12 3260 3015 198 193 18 70 chr1 24902320 24902377 -217761976 - MIR SINE MIR -11 251 198 * 372 315 8 24 chr1 24903042 24903169 -217761184 - MIR3 SINE MIR -69 139 15 482 306 50 6 chr1 24903365 24903525 -217760828 - MIR SINE MIR -65 197 31 653 290 16 16 chr1 24903629 24903822 -217760531 + MIR SINE MIR 1 193 -69 227 198 0 128 chr1 24904042 24904128 -217760225 + MER69 DNA AcHobo 2452 2526 0 506 211 141 21 chr1 24904136 24904278 -217760075 + MIR SINE MIR 102 260 -2 236 170 223 21 chr1 24904388 24904482 -217759871 - MIR SINE MIR -147 115 3 334 246 206 51 chr1 24905098 24905273 -217759080 + MIR SINE MIR 60 261 -1 806 278 36 20 chr1 24905349 24905597 -217758756 - MIR SINE MIR -9 253 2 255 290 48 34 chr1 24905597 24905735 -217758618 + MIR SINE MIR 52 145 -63 192 351 0 0 chr1 24906057 24906114 -217758239 + MIR SINE MIR 65 121 -141 538 249 52 3 chr1 24906191 24906361 -217757992 + MIR SINE MIR 19 262 0 1256 131 0 16 chr1 24906375 24906551 -217757802 - AluSg/x SINE Alu -3 307 133 2269 105 0 3 chr1 24906551 24906847 -217757506 - AluY SINE Alu -15 296 2 1256 131 0 16 chr1 24906847 24906861 -217757492 - AluSg/x SINE Alu -177 133 120 1598 241 89 8 chr1 24906915 24907388 -217756965 + LTR33 LTR ERVL 3 513 -8 505 324 47 0 chr1 24907493 24907641 -217756712 - L2 LINE L2 -2 3270 3116 1848 115 35 4 chr1 24907664 24907925 -217756428 + AluSx SINE Alu 1 269 -43 194 205 0 26 chr1 24908169 24908208 -217756145 + L2 LINE L2 3035 3072 -200 460 261 43 7 chr1 24908256 24908394 -217755959 - MIR SINE MIR -99 163 21 2427 89 3 0 chr1 24908571 24908874 -217755479 - AluSx SINE Alu -6 306 3 189 74 0 0 chr1 24909525 24909552 -217754801 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 279 281 16 62 chr1 24909720 24909848 -217754505 - L2 LINE L2 -174 3098 2977 466 276 97 7 chr1 24910068 24910213 -217754140 - MIR3 SINE MIR -35 173 16 379 262 96 0 chr1 24910380 24910546 -217753807 - MIR SINE MIR -64 198 56 2348 81 3 10 chr1 24910933 24911228 -217753125 + AluSc SINE Alu 1 293 -16 209 268 0 0 chr1 24911330 24911371 -217752982 - L2 LINE L2 -6 3307 3267 1505 189 0 0 chr1 24911558 24911801 -217752552 + AluJo SINE Alu 11 253 -59 757 226 21 51 chr1 24911828 24912062 -217752291 - MIR SINE MIR 0 262 36 2353 64 0 7 chr1 24912359 24912654 -217751699 - AluY SINE Alu -18 293 1 2407 98 0 0 chr1 24912654 24912951 -217751402 - AluSx SINE Alu -15 297 1 2022 207 47 7 chr1 24912963 24913408 -217750945 - MLT1C LTR MaLR -2 465 3 316 302 163 48 chr1 24913870 24914122 -217750231 + L2 LINE L2 2560 2840 -474 2388 113 0 0 chr1 24914243 24914544 -217749809 - AluSx SINE Alu -11 301 1 203 370 12 0 chr1 24914594 24914675 -217749678 + L2 LINE L2 2916 2997 -275 1549 174 65 4 chr1 24914733 24915008 -217749345 + AluJo SINE Alu 1 292 -20 391 226 98 0 chr1 24915145 24915247 -217749106 + MIR SINE MIR 42 153 -55 342 187 192 0 chr1 24915501 24915607 -217748746 - MIR3 SINE MIR -34 174 46 563 299 96 43 chr1 24916093 24916224 -217748129 - L2 LINE L2 -77 3236 3113 1734 141 108 7 chr1 24916224 24916501 -217747852 + AluSg SINE Alu 1 305 -5 563 299 96 43 chr1 24916501 24916847 -217747506 - L2 LINE L2 -200 3113 2787 2357 92 0 3 chr1 24916847 24917152 -217747201 - AluSx SINE Alu -8 304 1 563 299 96 43 chr1 24917152 24917506 -217746847 - L2 LINE L2 -526 2787 2325 360 239 80 29 chr1 24917578 24917716 -217746637 + L2 LINE L2 3168 3312 -1 953 178 0 0 chr1 24917771 24917928 -217746425 - AluSx SINE Alu -2 308 152 571 132 0 0 chr1 24917929 24918005 -217746348 - AluSx SINE Alu -235 77 2 2411 68 3 3 chr1 24918006 24918301 -217746052 - AluSx SINE Alu -13 299 5 1224 222 20 4 chr1 24918420 24918668 -217745685 - MIR SINE MIR -1 261 10 226 284 176 14 chr1 24918723 24918797 -217745556 + L2 LINE L2 3208 3293 -20 519 222 70 43 chr1 24918906 24919091 -217745262 - MIR SINE MIR -58 204 15 200 200 0 55 chr1 24919284 24919339 -217745014 + C-rich Low_complexity Low_complexity 6 57 0 274 240 125 29 chr1 24919643 24919747 -217744606 + L2 LINE L2 3159 3272 0 690 292 130 34 chr1 24919840 24920193 -217744160 + L2 LINE L2 2926 3312 -1 4330 90 67 7 chr1 24920500 24921099 -217743254 - MER41B LTR ERV1 0 635 1 344 193 0 0 chr1 24921258 24921315 -217743038 - L2 LINE L2 -1 3271 3215 303 315 43 0 chr1 24921675 24921767 -217742586 - L2 LINE L2 0 3272 3177 198 0 0 0 chr1 24921805 24921827 -217742526 + (T)n Simple_repeat Simple_repeat 1 22 0 2475 89 0 13 chr1 24921938 24922254 -217742099 + AluSx SINE Alu 1 312 0 4274 102 19 111 chr1 24922256 24922351 -217742002 + Tigger4(Zombi) DNA MER2_type 1926 2028 -703 2016 160 0 3 chr1 24922351 24922664 -217741689 + AluJb SINE Alu 1 312 0 4274 102 19 111 chr1 24922664 24922824 -217741529 + Tigger4(Zombi) DNA MER2_type 2028 2201 -530 7421 54 2 47 chr1 24922824 24924437 -217739916 + SVA Other Other 1 1384 -2 4274 102 19 111 chr1 24924437 24924511 -217739842 + Tigger4(Zombi) DNA MER2_type 2201 2280 -451 2143 120 0 0 chr1 24924511 24924822 -217739531 - AluSx SINE Alu 0 311 1 4274 102 19 111 chr1 24924822 24924992 -217739361 + Tigger4(Zombi) DNA MER2_type 2280 2464 -267 2501 39 0 48 chr1 24924992 24925303 -217739050 - AluY SINE Alu -15 296 1 4274 102 19 111 chr1 24925303 24925685 -217738668 + Tigger4(Zombi) DNA MER2_type 2464 2731 0 301 261 68 11 chr1 24925686 24925774 -217738579 - MIR SINE MIR -158 104 12 2247 87 0 7 chr1 24925804 24926110 -217738243 + AluSx SINE Alu 2 305 0 292 200 143 0 chr1 24927777 24927847 -217736506 + FRAM SINE Alu 71 150 -16 371 255 209 20 chr1 24927855 24928008 -217736345 + MIR SINE MIR 40 221 -41 265 287 96 11 chr1 24928022 24928116 -217736237 + MIR SINE MIR 53 154 -108 2097 122 0 13 chr1 24928762 24929066 -217735287 + AluSx SINE Alu 1 300 -12 225 321 36 12 chr1 24929601 24929685 -217734668 - L2 LINE L2 -37 3235 3150 478 214 189 19 chr1 24931584 24931743 -217732610 + MIR SINE MIR 59 244 -18 2281 74 30 0 chr1 24931838 24932137 -217732216 - AluY SINE Alu -3 308 1 1497 126 137 36 chr1 24932187 24932465 -217731888 - AluSg SINE Alu -3 307 2 246 286 77 44 chr1 24933165 24933256 -217731097 + MIR3 SINE MIR 10 103 -105 354 219 305 0 chr1 24933414 24933519 -217730834 + MER5A DNA MER1_type 40 176 -13 1132 171 9 43 chr1 24934079 24934290 -217730063 - AluJb SINE Alu -21 291 88 1928 110 0 0 chr1 24934923 24935178 -217729175 - AluSg SINE Alu -12 298 44 188 161 0 0 chr1 24935422 24935453 -217728900 + MIR SINE MIR 7 37 -225 385 162 144 0 chr1 24935463 24935574 -217728779 + L1MA4 LINE L1 6006 6132 -168 904 45 0 27 chr1 24935581 24935693 -217728660 - AluY SINE Alu -9 302 194 886 133 13 0 chr1 24935698 24935856 -217728497 + L1MA4 LINE L1 6138 6297 -3 1598 157 97 0 chr1 24935858 24936126 -217728227 + AluJb SINE Alu 1 294 -18 1451 165 116 15 chr1 24936128 24936395 -217727958 + AluJo SINE Alu 5 298 -14 2375 96 0 0 chr1 24936399 24936702 -217727651 + AluY SINE Alu 1 303 -8 488 214 129 34 chr1 24937202 24937380 -217726973 + MIR SINE MIR 67 261 -1 23 0 0 0 chr1 24937724 24937747 -217726606 + AT_rich Low_complexity Low_complexity 1 23 0 907 162 14 0 chr1 24937819 24937961 -217726392 + FRAM SINE Alu 21 164 -12 2072 112 11 3 chr1 24937961 24938246 -217726107 + AluSq SINE Alu 1 287 -26 199 56 93 0 chr1 24938248 24938302 -217726051 + (TA)n Simple_repeat Simple_repeat 2 60 0 319 262 9 65 chr1 24938304 24938411 -217725942 + L1MC4 LINE L1 6604 6704 -1338 * 323 280 95 53 chr1 24938395 24938584 -217725769 + L1ME4a LINE L1 5768 5964 -157 245 183 94 153 chr1 24938695 24938897 -217725456 + MER112 DNA MER1_type 1 190 -70 210 118 0 0 chr1 24938909 24938943 -217725410 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1926 132 29 0 chr1 24938945 24939218 -217725135 - AluSx SINE Alu -31 281 1 1855 134 105 9 chr1 24939240 24939582 -217724771 - THE1C LTR MaLR 0 375 1 821 195 40 0 chr1 24939595 24939744 -217724609 - FRAM SINE Alu -21 155 1 244 264 10 0 chr1 24939821 24939887 -217724466 - L3 LINE CR1 -10 1572 1506 296 275 121 67 chr1 24939889 24940038 -217724315 + MER5A DNA MER1_type 15 182 -7 1257 178 0 61 chr1 24940319 24940410 -217723943 + AluJo SINE Alu 54 149 -163 2178 127 7 0 chr1 24940410 24940710 -217723643 + AluSx SINE Alu 1 302 -10 2347 79 10 10 chr1 24940712 24941016 -217723337 + AluSc SINE Alu 1 304 -5 1257 178 0 61 chr1 24941016 24941185 -217723168 + AluJo SINE Alu 150 301 -11 1698 137 59 42 chr1 24941185 24941320 -217723033 + AluSx SINE Alu 1 132 -180 2479 57 3 17 chr1 24941320 24941621 -217722732 + AluSp SINE Alu 1 297 -16 1698 137 59 42 chr1 24941621 24941792 -217722561 + AluSx SINE Alu 132 312 0 2468 53 0 10 chr1 24941813 24942112 -217722241 + AluY SINE Alu 1 296 -15 2620 237 144 80 chr1 24942127 24942756 -217721597 - L2 LINE L2 -2 3311 2723 450 145 0 0 chr1 24942756 24942825 -217721528 + AluJb SINE Alu 152 220 -92 2620 237 144 80 chr1 24942825 24943287 -217721066 - L2 LINE L2 -590 2723 2292 1592 181 0 41 chr1 24943287 24943580 -217720773 + AluJo SINE Alu 1 281 -31 2711 48 0 0 chr1 24943581 24943890 -217720463 + AluY SINE Alu 1 309 -2 2620 237 144 80 chr1 24943890 24944519 -217719834 - L2 LINE L2 -1020 2293 1430 255 290 0 86 chr1 24944529 24944622 -217719731 + L2 LINE L2 2101 2185 -1129 * 282 163 0 0 chr1 24944588 24944637 -217719716 - L2 LINE L2 -1882 1432 1384 372 297 50 0 chr1 24944711 24944812 -217719541 - MIR SINE MIR -68 140 35 1071 158 38 6 chr1 24945020 24945203 -217719150 - MER5A DNA MER1_type 0 189 1 220 215 169 15 chr1 24946061 24946126 -217718227 - L2 LINE L2 0 3313 3239 430 173 13 0 chr1 24946135 24946210 -217718143 - MIR SINE MIR -175 87 12 744 224 41 0 chr1 24946215 24946385 -217717968 + MER113 DNA MER1_type? 342 518 -3 439 242 187 16 chr1 24946758 24946940 -217717413 + MIR SINE MIR 20 232 -30 2571 59 7 0 chr1 24947001 24947308 -217717045 + AluY SINE Alu 1 309 -2 190 284 118 29 chr1 24947351 24947453 -217716900 - L2 LINE L2 -656 2658 2548 2482 82 0 0 chr1 24947775 24948078 -217716275 + AluY SINE Alu 1 303 -8 334 277 11 21 chr1 24948458 24948552 -217715801 + L3 LINE CR1 1040 1132 -445 2245 111 0 10 chr1 24948552 24948850 -217715503 + AluSx SINE Alu 1 295 -17 509 154 43 111 chr1 24948850 24948921 -217715432 - MER5A DNA MER1_type -54 135 74 2442 81 3 0 chr1 24948921 24949217 -217715136 + AluSq SINE Alu 1 297 -16 509 154 43 111 chr1 24949217 24949262 -217715091 - MER5A DNA MER1_type -115 74 27 339 258 13 66 chr1 24949301 24949355 -217714998 - L2 LINE L2 -550 2764 2709 691 213 0 22 chr1 24949355 24949491 -217714862 - FLAM_A SINE Alu 0 133 1 339 258 13 66 chr1 24949491 24949587 -217714766 - L2 LINE L2 -605 2709 2622 1145 165 192 4 chr1 24949751 24950011 -217714342 - MER21B LTR ERV1 -201 662 354 239 313 169 0 chr1 24950191 24950274 -217714079 - MIR SINE MIR -109 99 2 2421 109 0 0 chr1 24950484 24950795 -217713558 - AluSx SINE Alu -1 311 1 265 283 243 17 chr1 24951039 24951216 -217713137 - MIR SINE MIR -44 218 2 766 164 8 15 chr1 24951255 24951389 -217712964 - FLAM_A SINE Alu 0 133 1 564 222 151 0 chr1 24951492 24951618 -217712735 + FAM SINE Alu 12 156 -29 2294 101 13 13 chr1 24951618 24951926 -217712427 + AluSg SINE Alu 3 310 0 244 273 193 0 chr1 24952253 24952341 -217712012 - L2 LINE L2 -59 3213 3109 189 292 21 0 chr1 24952342 24952390 -217711963 - L2 LINE L2 -81 3191 3143 2764 159 51 30 chr1 24952439 24953012 -217711341 + L1MB3 LINE L1 5598 6182 -1 25 51 0 0 chr1 24953045 24953084 -217711269 + AT_rich Low_complexity Low_complexity 1 39 0 351 267 79 69 chr1 24953211 24953413 -217710940 - L2 LINE L2 -262 3051 2848 219 178 200 0 chr1 24953725 24953770 -217710583 - MIR SINE MIR -66 142 89 744 221 191 4 chr1 24953775 24954037 -217710316 + MER115 DNA AcHobo 102 412 -281 1873 150 75 112 chr1 24954047 24954459 -217709894 - MLT1D LTR MaLR 0 505 114 854 147 0 0 chr1 24954459 24954575 -217709778 - FLAM_C SINE Alu -17 116 1 1873 150 75 112 chr1 24954575 24954681 -217709672 - MLT1D LTR MaLR -391 114 6 920 210 75 71 chr1 24954686 24954953 -217709400 + MER115 DNA AcHobo 418 685 -8 299 351 136 35 chr1 24955281 24955620 -217708733 - L2 LINE L2 -64 3208 2836 285 89 0 0 chr1 24955640 24955685 -217708668 + (A)n Simple_repeat Simple_repeat 1 45 0 2354 87 19 19 chr1 24955701 24956011 -217708342 + AluSx SINE Alu 3 312 0 312 274 22 74 chr1 24956030 24956165 -217708188 + L2 LINE L2 3145 3272 0 2456 101 0 0 chr1 24956170 24956478 -217707875 + AluSx SINE Alu 1 308 -4 1784 142 84 0 chr1 24956490 24956764 -217707589 + AluJb SINE Alu 1 297 -15 2388 89 0 0 chr1 24956771 24957064 -217707289 + AluSg SINE Alu 1 293 -17 2333 102 16 0 chr1 24957065 24957369 -217706984 + AluSp SINE Alu 2 310 -3 323 194 41 102 chr1 24957370 24957468 -217706885 + MER5B DNA MER1_type 84 175 -3 289 346 132 11 chr1 24957549 24957815 -217706538 - L2 LINE L2 -648 2666 2369 2549 56 0 7 chr1 24957834 24958137 -217706216 - AluY SINE Alu -10 301 1 2324 98 0 3 chr1 24958196 24958501 -217705852 - AluSg SINE Alu -6 304 1 2437 74 3 3 chr1 24958839 24959137 -217705216 + AluSp SINE Alu 1 298 -15 542 239 58 22 chr1 24959307 24959486 -217704867 + L1MC/D LINE L1 5476 5653 -740 2372 75 0 3 chr1 24959545 24959839 -217704514 + AluSx SINE Alu 1 293 -19 2411 72 0 47 chr1 24959839 24960157 -217704196 + AluY SINE Alu 1 303 -8 2223 104 0 0 chr1 24960177 24960476 -217703877 - AluSg SINE Alu 0 302 4 285 29 0 0 chr1 24960478 24960512 -217703841 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2119 108 18 0 chr1 24960512 24960790 -217703563 - AluSx SINE Alu -29 283 1 720 179 0 30 chr1 24960795 24960929 -217703424 - FLAM_C SINE Alu -3 130 1 2528 78 0 0 chr1 24961032 24961338 -217703015 + AluSp SINE Alu 1 306 -7 783 258 43 5 chr1 24961550 24961759 -217702594 + MIR SINE MIR 41 257 -5 356 264 153 28 chr1 24961759 24961903 -217702450 + MIR SINE MIR 37 198 -64 607 249 129 5 chr1 24962141 24962342 -217702011 - Charlie8 DNA MER1_type -2191 226 1 236 264 0 69 chr1 24962475 24962562 -217701791 - L1ME LINE L1 -695 5469 5389 226 224 69 0 chr1 24962745 24962803 -217701550 + L2 LINE L2 3248 3309 -4 2452 106 0 0 chr1 24963019 24963331 -217701022 - AluSx SINE Alu 0 312 1 417 293 62 36 chr1 24963616 24963841 -217700512 + L2 LINE L2 2854 3084 -188 376 294 188 33 chr1 24963885 24964157 -217700196 - L2 LINE L2 -93 3179 2866 2179 116 0 17 chr1 24964206 24964499 -217699854 - AluSx SINE Alu -18 294 7 2371 78 14 3 chr1 24964516 24964811 -217699542 - AluSq SINE Alu -15 298 1 232 127 79 32 chr1 24964811 24964874 -217699479 - MER116 DNA Mariner -14 66 1 1072 139 6 6 chr1 24964922 24965135 -217699218 - AluJo SINE Alu 0 330 118 534 163 96 104 chr1 24965135 24965226 -217699127 + MER113 DNA MER1_type? 32 122 -399 2292 130 0 0 chr1 24965226 24965534 -217698819 - AluSg SINE Alu -2 308 1 534 163 96 104 chr1 24965534 24965682 -217698671 + MER113 DNA MER1_type? 122 269 -252 2108 125 0 3 chr1 24965748 24966036 -217698317 + AluSc SINE Alu 1 287 -22 2250 113 0 3 chr1 24966043 24966345 -217698008 + AluSq SINE Alu 1 301 -12 337 323 89 46 chr1 24966393 24966521 -217697832 - L2 LINE L2 -723 2591 2470 2322 94 0 10 chr1 24966521 24966819 -217697534 + AluSx SINE Alu 1 295 -17 337 323 89 46 chr1 24966819 24966972 -217697381 - L2 LINE L2 -844 2470 2298 660 334 63 52 chr1 24967198 24967525 -217696828 - L2 LINE L2 -929 2385 2046 2250 99 0 33 chr1 24967525 24967828 -217696525 - AluSx SINE Alu -19 293 1 660 334 63 52 chr1 24967828 24968102 -217696251 - L2 LINE L2 -1268 2046 1777 259 206 87 54 chr1 24968119 24968144 -217696209 - L2 LINE L2 -1 3312 3289 2307 118 7 0 chr1 24968144 24968450 -217695903 + AluSx SINE Alu 1 308 -4 259 206 87 54 chr1 24968450 24968516 -217695837 - L2 LINE L2 -24 3289 3218 739 169 46 8 chr1 24968517 24968647 -217695706 + AluJo SINE Alu 1 135 -177 21 0 0 0 chr1 24968647 24968668 -217695685 + AT_rich Low_complexity Low_complexity 1 21 0 2317 83 21 0 chr1 24968668 24968958 -217695395 + AluSp SINE Alu 1 296 -17 357 228 416 0 chr1 24968967 24969116 -217695237 - L2 LINE L2 -80 3233 3023 2045 118 4 0 chr1 24969178 24969458 -217694895 - AluSx SINE Alu -11 301 21 290 294 73 57 chr1 24969526 24969703 -217694650 + L2 LINE L2 2704 2883 -431 568 275 46 62 chr1 24969797 24970037 -217694316 + MIR SINE MIR 20 255 -7 275 327 71 9 chr1 24970177 24970290 -217694063 + MIR SINE MIR 23 142 -120 2396 92 3 0 chr1 24970299 24970593 -217693760 + AluSg SINE Alu 1 295 -15 2352 61 4 0 chr1 24970712 24971032 -217693321 - AluY SINE Alu 0 321 1 22 0 0 0 chr1 24971033 24971055 -217693298 + AT_rich Low_complexity Low_complexity 1 22 0 1906 142 64 3 chr1 24971265 24971560 -217692793 - 7SLRNA srpRNA srpRNA -7 313 1 191 204 45 0 chr1 24971650 24971694 -217692659 + MIR SINE MIR 100 145 -63 219 184 189 160 chr1 24971762 24971795 -217692558 - L2 LINE L2 -1 3312 3281 2443 92 0 3 chr1 24971795 24972101 -217692252 + AluSq SINE Alu 1 305 -8 219 184 189 160 chr1 24972101 24972273 -217692080 - L2 LINE L2 -32 3281 3101 2131 113 30 7 chr1 24972361 24972662 -217691691 - AluSx SINE Alu -4 308 1 2463 97 0 0 chr1 24973092 24973402 -217690951 + AluSx SINE Alu 1 310 -2 328 299 31 31 chr1 24973569 24973696 -217690657 - MIR SINE MIR -125 137 11 1435 132 41 101 chr1 24973878 24974196 -217690157 - AluSq SINE Alu -14 299 1 2259 95 30 0 chr1 24974198 24974494 -217689859 - AluSx SINE Alu -7 305 1 1774 151 38 24 chr1 24974613 24974904 -217689449 + AluJb SINE Alu 1 295 -17 2247 62 7 7 chr1 24974909 24975183 -217689170 + AluY SINE Alu 1 274 -37 36 0 0 0 chr1 24975398 24975434 -217688919 + AT_rich Low_complexity Low_complexity 1 36 0 2459 96 0 0 chr1 24975684 24975986 -217688367 + AluSx SINE Alu 1 302 -10 1837 132 59 33 chr1 24976099 24976402 -217687951 - AluJo SINE Alu -1 311 1 234 255 0 20 chr1 24976610 24976661 -217687692 - MIR SINE MIR -142 66 17 284 140 60 0 chr1 24977311 24977361 -217686992 - L2 LINE L2 0 3313 3261 370 298 38 67 chr1 24977367 24977633 -217686720 + MIR SINE MIR 35 185 -23 1824 69 4 4 chr1 24979117 24979348 -217685005 - AluSg/x SINE Alu -6 303 73 2483 79 3 0 chr1 24980676 24980980 -217683373 + AluSq SINE Alu 1 305 -8 2442 88 3 0 chr1 24980995 24981301 -217683052 + AluSq SINE Alu 1 307 -6 492 265 77 12 chr1 24982011 24982181 -217682172 + MIR SINE MIR 72 252 -10 589 314 69 16 chr1 24982808 24983053 -217681300 - MIR SINE MIR -3 259 2 408 246 146 8 chr1 24983433 24983563 -217680790 + MIR SINE MIR 4 151 -111 1327 130 97 15 chr1 24983841 24984110 -217680243 + L1MB7 LINE L1 5874 6164 -20 295 272 110 15 chr1 24984169 24984305 -217680048 + MIR SINE MIR 112 260 -2 252 220 138 9 chr1 24984724 24984833 -217679520 - L1ME4a LINE L1 -11 6110 5988 2638 51 0 16 chr1 24984836 24985149 -217679204 - AluY SINE Alu -3 308 1 1588 159 43 53 chr1 24987244 24987332 -217677021 + AluJo SINE Alu 1 88 -224 2286 104 0 0 chr1 24987332 24987621 -217676732 + AluSq SINE Alu 3 291 -22 1588 159 43 53 chr1 24987621 24987834 -217676519 + AluJo SINE Alu 88 299 -13 577 301 46 25 chr1 24987869 24988108 -217676245 + MIR SINE MIR 19 262 0 545 235 35 18 chr1 24988172 24988342 -217676011 + L1MC4a LINE L1 5717 5889 -1919 870 173 27 0 chr1 24988395 24988545 -217675808 - AluSx SINE Alu -5 307 154 574 139 0 0 chr1 24988545 24988624 -217675729 - AluSx SINE Alu -212 100 22 965 180 56 2 chr1 24989608 24989846 -217674507 - AluJo SINE Alu -14 298 1 2064 149 7 0 chr1 24990169 24990465 -217673888 + AluSx SINE Alu 1 298 -14 1213 146 43 0 chr1 24991995 24992180 -217672173 + AluJo SINE Alu 3 195 -117 2313 84 3 3 chr1 24992180 24992467 -217671886 - AluY SINE Alu -24 287 1 1257 165 19 5 chr1 24992520 24992726 -217671627 + AluSg/x SINE Alu 90 298 -14 2478 87 0 3 chr1 24992931 24993242 -217671111 - AluSg SINE Alu 0 310 1 229 330 38 66 chr1 24993563 24993589 -217670764 + MIR SINE MIR 22 47 -215 1232 196 88 28 chr1 24993589 24993874 -217670479 + AluSx SINE Alu 1 302 -10 229 330 38 66 chr1 24993874 24993953 -217670400 + MIR SINE MIR 47 124 -138 1617 190 26 0 chr1 24997073 24997341 -217667012 + AluJb SINE Alu 1 275 -37 1864 157 11 0 chr1 24997418 24997705 -217666648 + AluJb SINE Alu 12 301 -11 193 319 11 43 chr1 24997719 24997813 -217666540 - MIR SINE MIR -148 114 24 248 277 134 34 chr1 24998153 24998272 -217666081 - MIR SINE MIR -3 259 129 350 270 108 18 chr1 24998372 24998483 -217665870 - MIR SINE MIR -128 134 14 1793 110 110 18 chr1 24998579 24998860 -217665493 - AluSg1 SINE Alu -2 307 1 1668 179 24 7 chr1 24999061 24999358 -217664995 - AluJb SINE Alu -10 302 1 1725 177 48 22 chr1 24999512 24999868 -217664485 + MLT1A1 LTR MaLR 1 365 0 2144 92 35 50 chr1 24999892 25000209 -217664144 - AluSx SINE Alu 0 312 1 2298 95 0 14 chr1 25000221 25000517 -217663836 - AluSx SINE Alu -20 292 1 187 238 0 71 chr1 25000521 25000563 -217663790 + MER5A DNA MER1_type 150 188 -1 1846 162 10 22 chr1 25000698 25000831 -217663522 + AluJb SINE Alu 1 134 -178 1944 94 4 0 chr1 25000831 25001075 -217663278 + AluSp SINE Alu 1 245 -68 263 27 0 27 chr1 25001076 25001113 -217663240 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 1846 162 10 22 chr1 25001113 25001291 -217663062 + AluJb SINE Alu 133 310 -2 2414 93 13 0 chr1 25001291 25001592 -217662761 + AluSp SINE Alu 1 305 -8 301 157 29 57 chr1 25001593 25001663 -217662690 - L2 LINE L2 -86 3227 3160 2473 83 0 0 chr1 25001663 25001965 -217662388 - AluSc SINE Alu -7 302 1 2611 55 3 0 chr1 25001965 25002272 -217662081 - AluY SINE Alu -2 309 1 216 354 31 24 chr1 25002282 25002409 -217661944 - MER5B DNA MER1_type -44 134 7 357 177 89 13 chr1 25002486 25002565 -217661788 + MIR SINE MIR 107 191 -71 1894 137 47 3 chr1 25003001 25003300 -217661053 + AluSx SINE Alu 1 312 0 1142 184 28 18 chr1 25003313 25003530 -217660823 + MER20 DNA MER1_type 1 219 0 672 217 120 120 chr1 25003535 25003917 -217660436 - MLT1I LTR MaLR -21 388 7 668 67 0 0 chr1 25003925 25004014 -217660339 + L1PB1 LINE L1 6059 6147 -4 552 219 219 44 chr1 25004119 25004245 -217660108 + MIR SINE MIR 14 117 -145 1865 117 24 103 chr1 25004245 25004379 -217659974 + AluYb8 SINE Alu 1 144 -174 2293 125 0 0 chr1 25004379 25004683 -217659670 + AluSg SINE Alu 1 304 -6 2270 82 36 0 chr1 25004685 25004966 -217659387 + AluY SINE Alu 3 293 -18 1865 117 24 103 chr1 25004966 25005169 -217659184 + AluYb8 SINE Alu 145 314 -4 552 219 219 44 chr1 25005169 25005247 -217659106 + MIR SINE MIR 117 254 -8 262 298 64 21 chr1 25005321 25005415 -217658938 - MIR SINE MIR -82 126 29 2507 63 0 0 chr1 25005484 25005784 -217658569 + AluY SINE Alu 1 300 -11 1952 158 0 3 chr1 25005792 25006089 -217658264 + AluJb SINE Alu 10 305 -7 253 241 19 0 chr1 25006089 25006143 -217658210 + MIR SINE MIR 25 79 -183 225 278 42 0 chr1 25006143 25006215 -217658138 + MLT1E3 LTR MaLR 485 559 -65 1916 168 0 0 chr1 25006438 25006735 -217657618 + AluJb SINE Alu 1 297 -15 375 266 0 0 chr1 25007069 25007148 -217657205 - Tigger5 DNA MER2_type -2244 79 1 * 1089 113 73 25 chr1 25007147 25007351 -217657002 - Tigger7 DNA MER2_type -2 2485 2272 * 3325 146 12 16 chr1 25007344 25007905 -217656448 - Tigger7 DNA MER2_type -1908 579 21 372 344 23 0 chr1 25007949 25008080 -217656273 - MIR SINE MIR -29 233 100 195 232 33 59 chr1 25008090 25008178 -217656175 - MIR SINE MIR -73 135 49 727 322 64 4 chr1 25008186 25008453 -217655900 - MER115 DNA AcHobo -71 622 340 651 181 191 71 chr1 25008459 25008741 -217655612 + HAL1 LINE L1 1328 1643 -864 2225 190 114 2 chr1 25008765 25009202 -217655151 + MLT1F LTR MaLR 3 488 -54 1053 233 20 22 chr1 25009206 25009562 -217654791 + LTR2 LTR ERV1 1 449 0 339 140 0 0 chr1 25009562 25009619 -217654734 + MLT1F LTR MaLR 486 542 0 445 211 76 114 chr1 25009647 25009771 -217654582 + MLT1F1 LTR MaLR 71 198 -369 2409 76 0 0 chr1 25009771 25010075 -217654278 + AluSx SINE Alu 1 304 -8 445 211 76 114 chr1 25010075 25010357 -217653996 + MLT1F1 LTR MaLR 198 567 0 404 243 27 108 chr1 25010442 25010562 -217653791 + MIR SINE MIR 49 150 -112 2265 82 20 0 chr1 25010562 25010856 -217653497 - AluSx SINE Alu -12 300 1 404 243 27 108 chr1 25010856 25010920 -217653433 + MIR SINE MIR 150 218 -44 1764 167 7 13 chr1 25011194 25011500 -217652853 - AluJb SINE Alu -8 304 1 474 293 82 9 chr1 25011701 25011933 -217652420 + MER112 DNA MER1_type 1 249 -11 551 254 14 0 chr1 25011941 25012079 -217652274 - MIR3 SINE MIR -14 194 55 621 278 45 53 chr1 25012082 25012132 -217652221 - MIR SINE MIR -2 260 211 2542 43 0 0 chr1 25012132 25012433 -217651920 - AluSc SINE Alu -8 301 1 621 278 45 53 chr1 25012433 25012627 -217651726 - MIR SINE MIR -51 211 18 182 393 0 0 chr1 25012869 25012930 -217651423 + MIR SINE MIR 101 161 -101 200 208 21 0 chr1 25013095 25013143 -217651210 + (CCGAG)n Simple_repeat Simple_repeat 3 51 0 230 266 27 35 chr1 25013525 25013611 -217650742 - MIR SINE MIR -60 148 81 537 232 134 0 chr1 25014363 25014505 -217649848 - MIR3 SINE MIR -3 205 45 2130 101 23 7 chr1 25015269 25015576 -217648777 + AluSx SINE Alu 1 312 0 2032 102 42 0 chr1 25015589 25015872 -217648481 + AluSg SINE Alu 1 295 -15 1966 117 0 0 chr1 25015876 25016149 -217648204 + AluSx SINE Alu 27 299 -13 791 240 57 22 chr1 25016337 25016566 -217647787 + MIR SINE MIR 9 245 -17 397 167 94 0 chr1 25016622 25016718 -217647635 - MER104 DNA Tc2 -2 178 74 2183 113 0 0 chr1 25016806 25017108 -217647245 + AluSx SINE Alu 1 302 -10 616 211 51 58 chr1 25017118 25017274 -217647079 + FRAM SINE Alu 1 155 -11 1738 171 0 3 chr1 25017286 25017572 -217646781 - AluJo SINE Alu -27 285 1 316 304 76 44 chr1 25017572 25017657 -217646696 + L1MCa LINE L1 1902 1983 -4443 1994 91 0 4 chr1 25017657 25017946 -217646407 - AluY SINE Alu 0 308 21 316 304 76 44 chr1 25017946 25018017 -217646336 + L1MCa LINE L1 1983 2064 -4362 * 384 239 45 23 chr1 25017960 25018048 -217646305 - L1MC4 LINE L1 -1339 6703 6614 383 289 23 0 chr1 25017998 25018100 -217646253 + L1MC4 LINE L1 6614 6703 -1339 * 216 0 0 0 chr1 25018100 25018124 -217646229 + (TG)n Simple_repeat Simple_repeat 2 25 0 2066 114 0 10 chr1 25018125 25018424 -217645929 - AluSx SINE Alu -16 296 1 390 246 120 16 chr1 25018424 25018607 -217645746 + L1MC5 LINE L1 7722 7923 -38 727 245 92 10 chr1 25018617 25018813 -217645540 - MIR SINE MIR -49 213 2 2554 49 0 0 chr1 25018900 25019208 -217645145 - AluY SINE Alu -2 309 2 505 150 20 50 chr1 25019371 25019471 -217644882 - AluSg/x SINE Alu 0 312 216 2101 133 0 0 chr1 25019880 25020182 -217644171 + AluSx SINE Alu 1 302 -10 243 238 286 0 chr1 25020753 25020837 -217643516 + L2 LINE L2 3161 3268 -4 202 29 57 0 chr1 25021290 25021325 -217643028 + (TA)n Simple_repeat Simple_repeat 2 38 0 1760 93 0 8 chr1 25021325 25021561 -217642792 - AluSq SINE Alu -79 234 1 207 0 0 0 chr1 25022391 25022414 -217641939 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2252 49 49 0 chr1 25023042 25023329 -217641024 + AluY SINE Alu 1 301 -10 1127 143 0 6 chr1 25023445 25023620 -217640733 + AluJb SINE Alu 127 300 -12 2499 54 0 10 chr1 25024560 25024874 -217639479 - AluY SINE Alu 0 311 1 285 277 24 0 chr1 25025243 25025326 -217639027 - MIR SINE MIR -70 192 108 279 215 77 0 chr1 25025365 25025430 -217638923 + MIR3 SINE MIR 109 178 -30 187 224 61 0 chr1 25025403 25025452 -217638901 + L3 LINE CR1 1525 1576 -1 * 181 83 56 0 chr1 25031134 25031170 -217633183 + (GGGTG)n Simple_repeat Simple_repeat 3 40 0 1950 123 10 3 chr1 25031897 25032189 -217632164 - AluSx SINE Alu -18 294 1 241 250 47 0 chr1 25032636 25032700 -217631653 - MIR SINE MIR -61 147 81 1879 139 14 3 chr1 25032981 25033275 -217631078 - AluJb SINE Alu -15 297 1 433 303 62 0 chr1 25033803 25033965 -217630388 + MIR SINE MIR 26 197 -65 442 296 74 9 chr1 25034663 25034884 -217629469 - MIR SINE MIR -6 256 20 27 62 0 0 chr1 25034927 25034975 -217629378 + GC_rich Low_complexity Low_complexity 1 48 0 275 275 0 0 chr1 25037474 25037543 -217626810 + L2 LINE L2 3169 3237 -35 523 267 111 74 chr1 25037637 25037701 -217626652 - MIR SINE MIR -1 261 201 2061 102 3 10 chr1 25037701 25037871 -217626482 - AluSq SINE Alu -9 304 135 2284 90 3 0 chr1 25037871 25038170 -217626183 - AluSx SINE Alu -11 301 2 2061 102 3 10 chr1 25038170 25038292 -217626061 - AluSq SINE Alu -178 135 14 523 267 111 74 chr1 25038292 25038491 -217625862 - MIR SINE MIR -61 201 2 186 250 71 0 chr1 25038546 25038602 -217625751 - MIR SINE MIR -62 146 87 977 161 0 18 chr1 25038779 25038947 -217625406 - FRAM SINE Alu -14 162 1 249 307 129 0 chr1 25039382 25039483 -217624870 + L2 LINE L2 2946 3059 -254 2222 235 149 16 chr1 25039588 25040436 -217623917 + L2 LINE L2 1236 2195 -1119 1135 216 139 52 chr1 25040517 25040615 -217623738 + L2 LINE L2 2584 2672 -641 2049 104 0 36 chr1 25040615 25040922 -217623431 - AluSx SINE Alu -16 296 1 1135 216 139 52 chr1 25040922 25041497 -217622856 + L2 LINE L2 2672 3313 0 249 206 130 54 chr1 25041536 25041628 -217622725 + L2 LINE L2 3137 3235 -37 329 256 117 104 chr1 25042428 25042744 -217621609 + L2 LINE L2 2953 3272 0 917 159 7 0 chr1 25043403 25043554 -217620799 - AluJb SINE Alu -2 310 159 2121 111 0 0 chr1 25043587 25043875 -217620478 - AluSx SINE Alu -24 288 1 198 0 0 0 chr1 25043887 25043909 -217620444 + (TA)n Simple_repeat Simple_repeat 2 23 0 2364 67 0 0 chr1 25043909 25044207 -217620146 - AluY SINE Alu -13 298 1 399 243 63 0 chr1 25044280 25044391 -217619962 + MLT1C LTR MaLR 59 176 -291 499 279 14 7 chr1 25044564 25044704 -217619649 + MIR3 SINE MIR 3 143 -65 342 275 141 7 chr1 25044842 25044991 -217619362 + MIR SINE MIR 28 196 -66 971 258 144 26 chr1 25045963 25046447 -217617906 - L2 LINE L2 0 3313 2772 469 360 20 45 chr1 25046712 25047004 -217617349 - L2 LINE L2 0 3272 2988 1289 184 31 23 chr1 25047030 25047286 -217617067 - AluJb SINE Alu -16 296 39 380 303 87 53 chr1 25047286 25047550 -217616803 - L2 LINE L2 -340 2974 2702 2284 99 0 0 chr1 25047557 25047859 -217616494 - AluSx SINE Alu -10 302 1 1656 127 24 103 chr1 25047897 25048237 -217616116 - AluYb8 SINE Alu -5 313 1 377 289 53 59 chr1 25048242 25048394 -217615959 + MIR SINE MIR 67 217 -45 698 162 9 0 chr1 25048540 25048651 -217615702 - FRAM SINE Alu -65 111 1 2263 97 0 0 chr1 25049040 25049338 -217615015 - AluSg SINE Alu -12 298 1 2547 157 17 42 chr1 25049414 25049595 -217614758 + MLT1C LTR MaLR 1 185 -282 2281 90 0 0 chr1 25049595 25049896 -217614457 + AluY SINE Alu 1 301 -10 2547 157 17 42 chr1 25049896 25050153 -217614200 + MLT1C LTR MaLR 185 429 -38 2359 97 0 0 chr1 25050153 25050464 -217613889 - AluY SINE Alu 0 311 1 2547 157 17 42 chr1 25050464 25050503 -217613850 + MLT1C LTR MaLR 429 467 0 1588 147 34 34 chr1 25050601 25050894 -217613459 - AluJo SINE Alu -19 293 1 412 232 222 16 chr1 25051041 25051226 -217613127 - MIR SINE MIR -3 259 37 306 258 11 118 chr1 25051694 25051880 -217612473 - MIR SINE MIR 0 262 97 261 253 66 0 chr1 25051912 25052003 -217612350 - MIR SINE MIR -96 112 16 1788 138 41 7 chr1 25052849 25053140 -217611213 + AluJb SINE Alu 4 304 -8 1972 121 21 0 chr1 25053226 25053515 -217610838 - AluSx SINE Alu -17 295 1 436 224 9 52 chr1 25053518 25053634 -217610719 - L2 LINE L2 -14 3299 3189 303 277 36 80 chr1 25053675 25053812 -217610541 + L1MC4a LINE L1 6984 7114 -694 839 215 48 0 chr1 25053846 25054032 -217610321 - MER3 DNA MER1_type 0 209 15 2090 111 0 0 chr1 25054116 25054405 -217609948 + AluSx SINE Alu 1 289 -23 340 146 0 50 chr1 25054478 25054550 -217609803 - Alu SINE Alu -244 55 1 405 309 20 39 chr1 25054584 25054788 -217609565 - L1ME LINE L1 -302 5819 5620 728 171 16 16 chr1 25054861 25054990 -217609363 - FLAM_C SINE Alu -14 129 1 321 307 109 0 chr1 25055459 25055651 -217608702 + L2 LINE L2 2236 2448 -866 2058 117 3 7 chr1 25055744 25056043 -217608310 + AluSx SINE Alu 2 299 -13 1972 132 0 10 chr1 25056043 25056339 -217608014 + AluJb SINE Alu 1 293 -19 428 285 166 25 chr1 25056570 25056805 -217607548 + L2 LINE L2 3037 3304 -9 406 206 157 0 chr1 25057433 25057535 -217606818 + L2 LINE L2 3189 3306 -7 2231 104 0 10 chr1 25057563 25057871 -217606482 + AluSq SINE Alu 1 305 -8 430 209 40 61 chr1 25057957 25058009 -217606344 - MIR SINE MIR -1 261 209 1967 111 7 4 chr1 25058009 25058320 -217606033 - AluSx SINE Alu 0 314 3 430 209 40 61 chr1 25058320 25058414 -217605939 - MIR SINE MIR -53 209 117 884 115 0 47 chr1 25058417 25058565 -217605788 + AluSg/x SINE Alu 170 310 0 392 309 24 0 chr1 25058565 25058688 -217605665 - MIR SINE MIR -136 126 1 398 273 94 7 chr1 25058871 25059020 -217605333 - MIR SINE MIR -73 135 13 401 292 154 17 chr1 25059251 25059488 -217604865 - MIR SINE MIR 0 262 2 430 156 16 0 chr1 25259535 25259599 -217404754 - AluS SINE Alu -247 66 2 1983 156 3 3 chr1 25259625 25259933 -217404420 + AluSx SINE Alu 1 308 -4 452 321 67 12 chr1 25260088 25260253 -217404100 + MIR SINE MIR 67 240 -22 2572 134 38 17 chr1 25260675 25261094 -217403259 - MSTA LTR MaLR 0 428 1 251 258 65 11 chr1 25261112 25261205 -217403148 + L1ME4a LINE L1 5978 6075 -46 465 199 93 43 chr1 25261422 25261481 -217402872 - Charlie1b DNA MER1_type -2238 523 468 2075 167 0 0 chr1 25261481 25261792 -217402561 + AluJb SINE Alu 1 311 -1 465 199 93 43 chr1 25261792 25261893 -217402460 - Charlie1b DNA MER1_type -2293 468 355 978 186 9 62 chr1 25261908 25262134 -217402219 + MER20 DNA MER1_type 2 215 -4 * 1390 188 35 102 chr1 25262131 25262296 -217402057 - Charlie1b DNA MER1_type -2386 375 200 2045 139 0 13 chr1 25262296 25262606 -217401747 - AluSx SINE Alu 0 312 7 1390 188 35 102 chr1 25262606 25262840 -217401513 - Charlie1b DNA MER1_type -2561 200 3 558 293 82 22 chr1 25263159 25263391 -217400962 - MIR SINE MIR -12 250 5 312 252 78 158 chr1 25263428 25263750 -217400603 - L2 LINE L2 -3 3269 2974 648 204 6 93 chr1 25264398 25264560 -217399793 - MIR SINE MIR -103 159 12 1422 107 0 5 chr1 25264948 25265135 -217399218 - AluSq SINE Alu -15 298 113 535 149 0 0 chr1 25265235 25265322 -217399031 - AluS SINE Alu -226 87 1 1824 132 61 20 chr1 25265609 25265904 -217398449 + AluSc SINE Alu 1 307 -2 28 29 0 0 chr1 25266072 25266107 -217398246 + AT_rich Low_complexity Low_complexity 1 35 0 233 254 0 0 chr1 25266479 25266550 -217397803 - L1MC4 LINE L1 0 8042 7972 2111 128 3 0 chr1 25266803 25267091 -217397262 - AluJo SINE Alu -14 298 10 273 305 28 38 chr1 25267343 25267556 -217396797 - L1MC/D LINE L1 -1923 5885 5675 2809 101 3 3 chr1 25267579 25267954 -217396399 - THE1C LTR MaLR 0 375 1 645 313 34 23 chr1 25267954 25268130 -217396223 - MER91A DNA MER1_type -15 181 4 2446 83 7 0 chr1 25268213 25268513 -217395840 - AluSx SINE Alu -10 302 1 309 194 42 0 chr1 25268670 25268742 -217395611 - L1MA10 LINE L1 0 6334 6260 801 166 33 13 chr1 25268844 25269035 -217395318 + AluJb SINE Alu 159 352 0 183 80 0 0 chr1 25269060 25269085 -217395268 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 1002 100 24 0 chr1 25269088 25269258 -217395095 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 284 252 194 0 chr1 25269451 25269590 -217394763 - MIR SINE MIR -93 169 4 796 170 44 33 chr1 25269597 25269779 -217394574 + MER20 DNA MER1_type 2 185 -34 537 271 71 51 chr1 25269790 25270045 -217394308 - L2 LINE L2 -25 3288 3029 2303 79 0 0 chr1 25270047 25270325 -217394028 + AluSx SINE Alu 21 298 -14 592 227 46 46 chr1 25271169 25271363 -217392990 - MIR SINE MIR -13 249 56 1254 263 137 37 chr1 25271863 25272160 -217392193 + L2 LINE L2 2216 2482 -831 2248 104 7 0 chr1 25272160 25272457 -217391896 - AluSq SINE Alu -14 299 1 1254 263 137 37 chr1 25272457 25273147 -217391206 + L2 LINE L2 2482 3313 0 431 290 57 45 chr1 25273417 25273593 -217390760 + MIR SINE MIR 14 191 -71 541 333 88 37 chr1 25273654 25274302 -217390051 - L2 LINE L2 -15 3257 2576 438 283 111 38 chr1 25274339 25274654 -217389699 + L1ME4a LINE L1 5562 5899 -222 2298 96 0 0 chr1 25274729 25275033 -217389320 + AluSx SINE Alu 1 304 0 203 191 0 24 chr1 25275367 25275409 -217388944 + MIR SINE MIR 113 153 -55 1684 192 0 31 chr1 25275569 25275744 -217388609 - AluJo SINE Alu -4 308 146 1743 142 43 18 chr1 25275744 25276026 -217388327 - AluSx SINE Alu -23 289 1 1684 192 0 31 chr1 25276026 25276168 -217388185 - AluJo SINE Alu -166 146 1 691 248 7 13 chr1 25276168 25276321 -217388032 - MIR SINE MIR -99 163 12 281 223 146 82 chr1 25276346 25276552 -217387801 + MER112 DNA MER1_type 30 248 -12 396 333 89 14 chr1 25276822 25277035 -217387318 - MIR SINE MIR -5 257 29 276 130 0 0 chr1 25278153 25278199 -217386154 + (CA)n Simple_repeat Simple_repeat 2 47 0 301 261 92 59 chr1 25278322 25278475 -217385878 + MER103 DNA DNA 1 158 -8 2269 107 3 0 chr1 25278481 25278779 -217385574 - AluSp SINE Alu -12 301 3 180 0 0 0 chr1 25278781 25278801 -217385552 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 519 316 45 28 chr1 25279454 25279683 -217384670 + MIR SINE MIR 19 250 -12 2051 139 3 7 chr1 25279746 25280055 -217384298 - AluSx SINE Alu -4 308 1 1856 129 7 42 chr1 25280492 25280637 -217383716 + AluJo SINE Alu 1 131 -181 2363 103 0 3 chr1 25280637 25280938 -217383415 + AluSg SINE Alu 1 300 -10 1856 129 7 42 chr1 25280938 25281101 -217383252 + AluJo SINE Alu 131 298 -14 21 36 0 0 chr1 25281101 25281129 -217383224 + AT_rich Low_complexity Low_complexity 1 28 0 3053 216 80 85 chr1 25281314 25282620 -217381733 - MLT1B-int LTR MaLR -72 1299 1 2007 151 53 21 chr1 25282620 25282998 -217381355 - MLT1B LTR MaLR 0 390 1 525 77 26 0 chr1 25282999 25283077 -217381276 - L1ME LINE L1 -440 5724 5645 1392 143 28 9 chr1 25283080 25283297 -217381056 + AluJo SINE Alu 71 291 -21 309 151 0 0 chr1 25283306 25283359 -217380994 + GA-rich Low_complexity Low_complexity 1 53 0 1515 199 85 2 chr1 25283371 25283792 -217380561 - L1ME LINE L1 -521 5643 5190 2017 157 3 6 chr1 25284306 25284619 -217379734 + AluJb SINE Alu 1 312 0 338 176 167 0 chr1 25284888 25284990 -217379363 - MIR SINE MIR -12 250 132 674 176 115 7 chr1 25285020 25285168 -217379185 - MER20 DNA MER1_type -49 170 7 496 222 19 0 chr1 25285169 25285277 -217379076 - MIR SINE MIR -121 141 32 1890 135 31 7 chr1 25286197 25286485 -217377868 - AluJo SINE Alu -17 295 1 1439 219 50 88 chr1 25286929 25287508 -217376845 - L1MC5 LINE L1 -785 7176 6620 2247 109 0 3 chr1 25287537 25287830 -217376523 - AluSx SINE Alu -20 292 1 1467 271 34 0 chr1 25287847 25288256 -217376097 - MLT1-int LTR MaLR -771 600 178 241 111 44 0 chr1 25288316 25288361 -217375992 + MLT1E2 LTR MaLR 272 318 -308 251 254 17 0 chr1 25288379 25288438 -217375915 + L2 LINE L2 3002 3061 -211 282 87 0 0 chr1 25288944 25288990 -217375363 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 210 127 32 32 chr1 25289164 25289227 -217375126 + CT-rich Low_complexity Low_complexity 1 63 0 1714 150 0 92 chr1 25289318 25289644 -217374709 - AluJo SINE Alu -16 296 1 2095 244 18 8 chr1 25289644 25290147 -217374206 + MLT2B3 LTR ERVL 1 508 -46 2175 94 25 3 chr1 25290156 25290442 -217373911 - AluSg SINE Alu -18 292 1 347 284 91 91 chr1 25290452 25290774 -217373579 - L1MC5 LINE L1 -1879 5929 5605 2407 99 0 6 chr1 25290774 25291087 -217373266 - AluSx SINE Alu 0 312 2 347 284 91 91 chr1 25291087 25291278 -217373075 - L1MC5 LINE L1 -2202 5606 5416 185 245 102 0 chr1 25291641 25291690 -217372663 - L3 LINE CR1 -483 1094 1041 305 227 82 9 chr1 25291756 25291866 -217372487 - L1ME4a LINE L1 -12 6109 5992 1393 196 12 0 chr1 25291969 25292219 -217372134 - AluJo SINE Alu -21 291 39 1761 178 14 3 chr1 25292224 25292517 -217371836 - AluJb SINE Alu -16 296 1 24 0 0 0 chr1 25292517 25292541 -217371812 + AT_rich Low_complexity Low_complexity 1 24 0 229 250 0 0 chr1 25292541 25292589 -217371764 - L1ME4a LINE L1 -543 5578 5531 219 298 43 11 chr1 25293058 25293152 -217371201 + MIR SINE MIR 69 165 -97 306 73 0 0 chr1 25293161 25293202 -217371151 + (TG)n Simple_repeat Simple_repeat 2 42 0 1305 26 0 0 chr1 25293237 25293392 -217370961 + L1PA4 LINE L1 6001 6155 0 1063 227 99 37 chr1 25293419 25293451 -217370902 - L2 LINE L2 -626 2688 2659 2129 117 53 42 chr1 25293451 25293811 -217370542 + THE1B LTR MaLR 1 364 0 1063 227 99 37 chr1 25293811 25294153 -217370200 - L2 LINE L2 -655 2659 2291 1879 151 21 3 chr1 25294174 25294459 -217369894 + AluJb SINE Alu 1 290 -22 330 259 175 6 chr1 25294525 25294691 -217369662 - MER117 DNA MER1_type 0 197 4 2548 75 0 0 chr1 25294737 25295043 -217369310 + AluY SINE Alu 1 306 -5 614 293 80 9 chr1 25295044 25295256 -217369097 + MIR SINE MIR 25 251 -11 17533 126 16 94 chr1 25296410 25300135 -217364218 - L1P LINE L1 -2703 3443 12 654 278 217 34 chr1 25300238 25300736 -217363617 + L2 LINE L2 2446 2851 -462 2064 135 7 0 chr1 25300736 25301039 -217363314 - AluSq SINE Alu -3 310 6 654 278 217 34 chr1 25301039 25301267 -217363086 + L2 LINE L2 2851 3313 0 209 196 33 22 chr1 25301426 25301518 -217362835 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 1122 222 4 47 chr1 25302060 25302317 -217362036 - MIR SINE MIR -15 247 2 410 249 77 72 chr1 25302493 25302674 -217361679 + MIR SINE MIR 7 188 -74 408 223 115 15 chr1 25302780 25302910 -217361443 + MIR SINE MIR 120 262 0 1882 148 30 10 chr1 25302960 25303258 -217361095 + AluJo SINE Alu 1 304 -8 319 194 32 0 chr1 25303309 25303371 -217360982 + MIR SINE MIR 93 156 -106 2327 118 0 6 chr1 25304094 25304408 -217359945 + AluSx SINE Alu 1 312 0 320 226 0 71 chr1 25304509 25304593 -217359760 - MIR SINE MIR -109 153 76 567 271 58 50 chr1 25304668 25304703 -217359650 - MIR SINE MIR -2 260 227 577 51 25 13 chr1 25304703 25304782 -217359571 + MADE1 DNA Mariner 1 80 0 567 271 58 50 chr1 25304782 25304966 -217359387 - MIR SINE MIR -35 227 41 387 218 127 0 chr1 25305121 25305231 -217359122 - L1ME3A LINE L1 -188 5982 5859 2964 197 27 56 chr1 25305503 25306190 -217358163 - L1ME2 LINE L1 -10 6154 5489 1950 147 0 7 chr1 25306190 25306500 -217357853 - AluJb SINE Alu 0 308 1 2964 197 27 56 chr1 25306500 25306577 -217357776 - L1ME2 LINE L1 -675 5489 5411 555 250 150 39 chr1 25306752 25306932 -217357421 + MIR SINE MIR 6 205 -57 371 232 20 20 chr1 25307441 25307540 -217356813 + MIR SINE MIR 28 126 -136 183 286 143 41 chr1 25308334 25308432 -217355921 + L3 LINE CR1 1062 1169 -408 372 265 73 114 chr1 25308756 25308891 -217355462 + L2 LINE L2 2916 3055 -258 1785 177 17 3 chr1 25308891 25309190 -217355163 + AluJb SINE Alu 1 303 -9 372 265 73 114 chr1 25309190 25309450 -217354903 + L2 LINE L2 3055 3295 -18 193 107 0 0 chr1 25310150 25310178 -217354175 - L2 LINE L2 -32 3240 3213 * 201 54 27 81 chr1 25310153 25310190 -217354163 - MIR SINE MIR -29 233 199 619 276 31 85 chr1 25310190 25310427 -217353926 - L2 LINE L2 -13 3300 3080 1896 135 0 78 chr1 25310427 25310761 -217353592 - AluJb SINE Alu 0 312 5 619 276 31 85 chr1 25310761 25310816 -217353537 - L2 LINE L2 -233 3080 3024 407 331 20 7 chr1 25310815 25310966 -217353387 - MIR SINE MIR -62 200 48 * 449 317 48 29 chr1 25311581 25311789 -217352564 + L1MC4a LINE L1 5709 5920 -1888 1102 178 0 0 chr1 25311796 25311970 -217352383 - AluJb SINE Alu -6 306 133 225 0 0 0 chr1 25311970 25311995 -217352358 + (TG)n Simple_repeat Simple_repeat 2 26 0 954 225 74 22 chr1 25311999 25312270 -217352083 + AluJo SINE Alu 19 303 -9 21 36 0 0 chr1 25312407 25312435 -217351918 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr1 25312564 25312600 -217351753 + AT_rich Low_complexity Low_complexity 1 36 0 1012 152 91 0 chr1 25312748 25312913 -217351440 + AluJb SINE Alu 115 294 -18 186 43 0 0 chr1 25312922 25312945 -217351408 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2719 211 53 31 chr1 25313003 25313340 -217351013 + MER82 DNA MER2_type 1 361 -292 1762 198 0 0 chr1 25313340 25313657 -217350696 - AluJo SINE Alu 0 317 1 2719 211 53 31 chr1 25313657 25313957 -217350396 + MER82 DNA MER2_type 361 653 0 428 284 29 0 chr1 25314062 25314164 -217350189 + MIR SINE MIR 157 261 -1 1543 184 57 18 chr1 25314166 25314448 -217349905 + AluJo SINE Alu 11 303 -9 213 279 96 48 chr1 25314823 25314927 -217349426 + L2 LINE L2 3160 3268 -4 1870 137 24 14 chr1 25315019 25315311 -217349042 + AluSx SINE Alu 1 295 -17 623 309 26 18 chr1 25315505 25315749 -217348604 - MIR SINE MIR 0 262 18 297 323 24 118 chr1 25315906 25316374 -217347979 + L2 LINE L2 2840 3263 -9 338 321 85 48 chr1 25316441 25316771 -217347582 + L2 LINE L2 2884 3225 -47 299 297 104 15 chr1 25317099 25317237 -217347116 + MIR SINE MIR 16 162 -60 2433 99 0 6 chr1 25317342 25317654 -217346699 + AluSg SINE Alu 1 310 0 340 118 0 0 chr1 25317733 25317784 -217346569 + MIR SINE MIR 110 160 -102 832 263 83 0 chr1 25317802 25318030 -217346323 + MIR SINE MIR 5 251 -11 350 250 33 22 chr1 25318037 25318129 -217346224 + MIR SINE MIR 153 245 -17 562 133 286 0 chr1 25318755 25318860 -217345493 - AluSq/x SINE Alu -176 136 2 1222 164 14 0 chr1 25318961 25319173 -217345180 - MER2 DNA MER2_type -1 344 130 15197 116 28 10 chr1 25319173 25320121 -217344232 - Tigger1 DNA MER2_type 0 2418 1489 2116 124 3 0 chr1 25320121 25320420 -217343933 + AluSg SINE Alu 1 300 -10 15197 116 28 10 chr1 25320420 25321823 -217342530 - Tigger1 DNA MER2_type -929 1489 24 642 133 150 0 chr1 25321832 25321945 -217342408 - MER2 DNA MER2_type -215 130 1 31 0 0 0 chr1 25322028 25322059 -217342294 + AT_rich Low_complexity Low_complexity 1 31 0 647 221 14 0 chr1 25322249 25322389 -217341964 - MLT1A2 LTR MaLR -51 323 182 238 105 0 140 chr1 25322393 25322450 -217341903 - MLT1A2 LTR MaLR -167 207 159 220 296 37 37 chr1 25322473 25322554 -217341799 + L2 LINE L2 3191 3271 -1 497 180 63 149 chr1 25322593 25322772 -217341581 - MIR SINE MIR -69 139 1 2392 71 26 16 chr1 25323455 25323763 -217340590 + AluSx SINE Alu 1 311 -1 221 217 385 0 chr1 25323917 25324000 -217340353 - MIR SINE MIR -74 188 74 296 241 19 28 chr1 25324272 25324380 -217339973 + GA-rich Low_complexity Low_complexity 1 107 0 411 92 0 15 chr1 25324435 25324500 -217339853 - MLT2B2 LTR ERVL 0 515 452 461 71 83 0 chr1 25324503 25324587 -217339766 + AluY SINE Alu 1 91 -220 331 111 16 32 chr1 25324687 25324750 -217339603 - L1M4 LINE L1 -406 5778 5717 266 136 141 153 chr1 25324755 25324884 -217339469 + Charlie5 DNA MER1_type 2352 2480 -144 2511 78 3 0 chr1 25324884 25325190 -217339163 - AluSp SINE Alu -6 307 1 266 136 141 153 chr1 25325190 25325237 -217339116 + Charlie5 DNA MER1_type 2480 2526 -98 637 287 25 4 chr1 25325644 25325828 -217338525 + MIR3 SINE MIR 18 201 -7 492 239 148 14 chr1 25325840 25325982 -217338371 + MIR SINE MIR 36 196 -66 341 268 43 11 chr1 25325988 25326154 -217338199 - MIR SINE MIR -8 254 8 259 343 101 1 chr1 25326218 25326372 -217337981 - MIR3 SINE MIR -40 168 28 293 331 15 31 chr1 25326640 25326770 -217337583 - L2 LINE L2 -8 3264 3137 1017 273 21 10 chr1 25326787 25327112 -217337241 + L1ME LINE L1 5461 5772 -349 358 239 39 41 chr1 25327394 25327542 -217336811 - L1M2 LINE L1 -722 5442 5289 287 268 107 45 chr1 25327731 25327843 -217336510 + MIR SINE MIR 14 132 -130 2027 203 73 29 chr1 25328001 25328374 -217335979 + MLT1D LTR MaLR 5 405 -100 1719 208 13 0 chr1 25328374 25328682 -217335671 - AluJo SINE Alu 0 312 1 2027 203 73 29 chr1 25328682 25328786 -217335567 + MLT1D LTR MaLR 405 503 -2 500 330 64 14 chr1 25328871 25329089 -217335264 - MIR SINE MIR -14 248 20 875 294 78 35 chr1 25329514 25330034 -217334319 + L1ME LINE L1 5275 5824 -297 1345 155 34 75 chr1 25330130 25330252 -217334101 - L1MB2 LINE L1 0 6171 6046 2427 71 0 10 chr1 25330252 25330560 -217333793 - AluSg SINE Alu -5 305 1 1345 155 34 75 chr1 25330560 25330759 -217333594 - L1MB2 LINE L1 -125 6046 5863 1909 58 58 0 chr1 25331211 25331453 -217332900 - AluY SINE Alu 0 311 56 335 210 0 0 chr1 25332221 25332291 -217332062 + MIR SINE MIR 41 109 -105 621 283 61 20 chr1 25332367 25332565 -217331788 - MIR SINE MIR -55 207 2 532 274 139 10 chr1 25333225 25333433 -217330920 + MIR SINE MIR 7 241 -21 197 175 25 25 chr1 25333422 25333462 -217330891 + L2 LINE L2 3216 3255 -17 * 210 254 55 0 chr1 25333630 25333685 -217330668 - MIR SINE MIR -168 94 37 211 317 73 0 chr1 25333871 25333953 -217330400 - MIR SINE MIR -169 93 6 424 321 48 31 chr1 25334642 25335103 -217329250 - MLT1L LTR MaLR -3 611 123 233 189 113 0 chr1 25335072 25335125 -217329228 - MLT1L LTR MaLR -414 201 143 * 662 209 30 0 chr1 25335200 25335334 -217329019 + MLT1J2 LTR MaLR 18 155 -295 405 288 9 0 chr1 25335364 25335475 -217328878 - MER58C DNA MER1_type 0 215 104 429 246 23 8 chr1 25335495 25335625 -217328728 - MER58C DNA MER1_type -83 132 1 334 263 59 25 chr1 25335660 25335778 -217328575 + MLT1J2 LTR MaLR 265 386 -64 1906 124 59 12 chr1 25335785 25336124 -217328229 - L1MB3 LINE L1 -1 6182 5828 1861 124 4 11 chr1 25336124 25336398 -217327955 - AluSq SINE Alu 0 313 42 2366 88 0 3 chr1 25336398 25336694 -217327659 - AluSx SINE Alu -17 295 1 1628 195 127 22 chr1 25336722 25337138 -217327215 - LTR64 LTR ERVK -96 462 3 231 277 62 27 chr1 25337139 25337251 -217327102 + MIR SINE MIR 14 129 -133 289 307 45 0 chr1 25338315 25338403 -217325950 + MIR SINE MIR 1 92 -170 351 306 104 35 chr1 25339144 25339288 -217325065 + L2 LINE L2 3119 3272 0 219 260 110 14 chr1 25339693 25339766 -217324587 + MIR SINE MIR 111 190 -72 586 320 46 58 chr1 25339916 25340347 -217324006 + L2 LINE L2 2868 3293 -20 352 304 0 0 chr1 25340453 25340532 -217323821 + MIR SINE MIR 1 79 -183 413 294 57 8 chr1 25340532 25340671 -217323682 - MIR SINE MIR -48 160 15 1129 201 13 66 chr1 25340714 25341032 -217323321 + L1MD2 LINE L1 6052 6352 -7 763 254 6 0 chr1 25341278 25341447 -217322906 - MER63A DNA MER1_type 0 210 41 237 283 54 22 chr1 25341790 25341882 -217322471 + MIR3 SINE MIR 82 176 -32 328 238 48 12 chr1 25341948 25342032 -217322321 + MIR SINE MIR 108 194 -68 2061 151 3 0 chr1 25342374 25342672 -217321681 + AluJb SINE Alu 1 299 -13 321 91 0 0 chr1 25342879 25342923 -217321430 - AluSq SINE Alu -257 44 1 1850 124 87 0 chr1 25342924 25343199 -217321154 - AluSx SINE Alu -13 299 1 1173 128 31 0 chr1 25343199 25343394 -217320959 - L1MB3 LINE L1 -354 5829 5629 225 224 0 0 chr1 25343397 25343455 -217320898 + MLT1J1 LTR MaLR 374 431 -15 551 283 6 57 chr1 25343499 25343676 -217320677 - MIR SINE MIR -14 248 81 494 267 51 97 chr1 25343678 25343989 -217320364 - L2 LINE L2 -94 3178 2882 201 243 68 68 chr1 25343975 25344049 -217320304 - MIR SINE MIR -187 75 2 * 211 234 43 0 chr1 25344094 25344141 -217320212 + MIR3 SINE MIR 159 207 -1 2325 102 0 3 chr1 25344451 25344746 -217319607 + AluSx SINE Alu 1 294 -18 1760 144 11 39 chr1 25345032 25345316 -217319037 + AluSx SINE Alu 2 277 -35 787 139 16 8 chr1 25345420 25345542 -217318811 - AluSq/x SINE Alu -188 124 2 767 246 105 13 chr1 25346053 25346281 -217318072 - MIR SINE MIR -7 255 7 622 223 0 105 chr1 25346446 25346609 -217317744 + MER63A DNA MER1_type 5 139 -1549 933 265 0 58 chr1 25346609 25346922 -217317431 + AluY SINE Alu 1 295 -6 622 223 0 105 chr1 25346922 25346987 -217317366 + MER63A DNA MER1_type 139 209 -1 199 279 88 83 chr1 25347199 25347403 -217316950 + L2 LINE L2 2852 3056 -216 632 167 18 0 chr1 25347433 25347547 -217316806 - MSTD LTR MaLR 0 396 281 651 261 4 50 chr1 25347788 25348048 -217316305 + AluSx SINE Alu 42 289 -23 198 0 0 0 chr1 25348048 25348070 -217316283 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 458 246 7 36 chr1 25348137 25348275 -217316078 - MER117 DNA MER1_type -38 159 26 706 220 225 14 chr1 25348279 25348694 -217315659 - MLT1H1 LTR MaLR -24 531 8 633 286 71 50 chr1 25349050 25349431 -217314922 - L2 LINE L2 -2 3311 2923 681 162 0 8 chr1 25349440 25349557 -217314796 - AluJ SINE Alu -11 301 186 943 71 0 0 chr1 25349563 25349675 -217314678 - AluJ SINE Alu -180 132 21 242 253 67 0 chr1 25349780 25349855 -217314498 - L2 LINE L2 -595 2719 2640 1188 168 0 0 chr1 25349993 25350166 -217314187 + AluJo SINE Alu 7 179 -133 270 81 0 0 chr1 25350270 25350307 -217314046 + (GA)n Simple_repeat Simple_repeat 1 37 0 189 243 14 68 chr1 25350510 25350584 -217313769 - L2 LINE L2 -817 2497 2428 444 250 61 71 chr1 25350871 25351067 -217313286 - MLT1K LTR MaLR -339 249 56 716 313 63 14 chr1 25351105 25351389 -217312964 - L3 LINE CR1 -25 1552 1255 208 311 0 27 chr1 25351446 25351520 -217312833 + MIR SINE MIR 23 94 -114 509 301 26 7 chr1 25351524 25351677 -217312676 - MIR SINE MIR -97 165 10 334 213 0 0 chr1 25351669 25351730 -217312623 + MIR SINE MIR 79 139 -69 * 763 209 5 78 chr1 25351736 25351759 -217312594 - MER5A DNA MER1_type -12 177 154 1744 126 4 4 chr1 25351759 25352006 -217312347 - AluJb SINE Alu -53 259 13 763 209 5 78 chr1 25352006 25352173 -217312180 - MER5A DNA MER1_type -35 154 1 2028 105 54 17 chr1 25352259 25352553 -217311800 - AluSx SINE Alu -7 305 1 276 30 0 0 chr1 25352580 25352613 -217311740 + (TG)n Simple_repeat Simple_repeat 1 33 0 228 35 0 0 chr1 25352612 25352641 -217311712 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 1957 144 37 42 chr1 25352737 25353118 -217311235 - Tigger2a DNA MER2_type -51 383 5 871 176 57 10 chr1 25353121 25353314 -217311039 + L1MB7 LINE L1 5964 6165 -19 187 189 0 27 chr1 25353349 25353386 -217310967 - MIR SINE MIR -189 73 38 1015 154 0 12 chr1 25353939 25354101 -217310252 + AluJo SINE Alu 13 172 -140 434 259 244 0 chr1 25354299 25354496 -217309857 - MIR SINE MIR -6 256 12 276 271 47 19 chr1 25354543 25354650 -217309703 + MIR SINE MIR 38 147 -61 2366 78 3 3 chr1 25356396 25356691 -217307662 + AluSg SINE Alu 1 295 -15 2277 97 3 3 chr1 25357068 25357367 -217306986 + AluSx SINE Alu 1 299 -13 590 292 74 25 chr1 25358765 25358967 -217305386 - MIR SINE MIR -4 258 47 291 114 0 0 chr1 25359448 25359492 -217304861 + (TA)n Simple_repeat Simple_repeat 2 45 0 266 288 138 0 chr1 25359492 25359590 -217304763 + MIR SINE MIR 152 262 0 1134 176 73 11 chr1 25359837 25360098 -217304255 - L1ME2 LINE L1 -19 6145 5869 623 168 75 0 chr1 25360672 25360779 -217303574 - FLAM_C SINE Alu -27 116 2 435 243 88 14 chr1 25361122 25361270 -217303083 + MER103 DNA DNA 6 164 -2 306 207 156 43 chr1 25361989 25362110 -217302243 + MIR SINE MIR 10 121 -87 698 269 16 16 chr1 25362932 25363118 -217301235 - MIR3 SINE MIR -7 201 16 832 204 98 27 chr1 25363134 25363359 -217300994 - MIR SINE MIR -10 252 12 766 276 74 21 chr1 25364022 25364267 -217300086 - MIR SINE MIR -1 261 5 476 313 163 13 chr1 25364573 25364800 -217299553 + MIR SINE MIR 2 262 0 186 43 0 0 chr1 25365396 25365419 -217298934 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 437 295 133 0 chr1 25366161 25366334 -217298019 + MIR SINE MIR 35 230 -32 521 302 79 8 chr1 25366454 25366750 -217297603 - L1ME2 LINE L1 -337 5784 5445 2705 49 3 0 chr1 25367011 25367316 -217297037 + AluSp SINE Alu 1 306 -7 195 331 60 60 chr1 25367561 25367694 -217296659 + MIR SINE MIR 109 241 -21 217 150 0 0 chr1 25368088 25368128 -217296225 - L2 LINE L2 -1 3312 3273 443 265 75 45 chr1 25368336 25368500 -217295853 + MIR SINE MIR 30 203 -59 428 106 12 0 chr1 25368500 25368585 -217295768 + (TA)n Simple_repeat Simple_repeat 1 86 0 443 265 75 45 chr1 25368585 25368620 -217295733 + MIR SINE MIR 203 235 -27 242 228 63 25 chr1 25368649 25368728 -217295625 - MIR SINE MIR -64 144 63 209 276 69 0 chr1 25369341 25369399 -217294954 - MER91B DNA MER1_type -128 62 1 2041 103 4 0 chr1 25369858 25370120 -217294233 - AluSq SINE Alu -50 263 1 222 304 109 0 chr1 25370126 25370218 -217294135 + MIR SINE MIR 86 187 -75 701 219 79 14 chr1 25370238 25370448 -217293905 - MIR SINE MIR -8 254 33 678 326 25 17 chr1 25371307 25371543 -217292810 + MIR SINE MIR 13 250 -12 508 272 105 62 chr1 25371523 25371780 -217292573 - L2 LINE L2 -22 3291 3024 * 344 336 26 9 chr1 25372483 25372599 -217291754 + L2 LINE L2 3188 3305 -8 346 193 53 44 chr1 25372630 25372744 -217291609 + MIR SINE MIR 27 141 -121 557 313 71 21 chr1 25374489 25374729 -217289624 + MIR SINE MIR 5 256 -6 566 207 152 0 chr1 25375258 25375403 -217288950 + MIR SINE MIR 19 185 -77 252 304 0 0 chr1 25376019 25376113 -217288240 + MIR SINE MIR 44 137 -71 26 0 0 0 chr1 25377043 25377069 -217287284 + GC_rich Low_complexity Low_complexity 1 26 0 353 324 57 23 chr1 25377239 25377415 -217286938 - MIR SINE MIR 0 262 81 319 296 21 35 chr1 25377489 25377631 -217286722 + L1ME4a LINE L1 5966 6105 -16 812 166 118 0 chr1 25377685 25377713 -217286640 + MER5A DNA MER1_type 1 24 -165 180 0 0 0 chr1 25377713 25377733 -217286620 + (CAT)n Simple_repeat Simple_repeat 1 20 0 812 166 118 0 chr1 25377733 25377873 -217286480 + MER5A DNA MER1_type 24 189 0 416 269 67 8 chr1 25377982 25378116 -217286237 + MIR SINE MIR 47 188 -74 249 262 136 19 chr1 25378402 25378505 -217285848 + L2 LINE L2 3195 3309 -4 250 224 71 12 chr1 25378940 25379025 -217285328 - MIR SINE MIR 0 262 173 560 283 56 28 chr1 25379113 25379293 -217285060 - MIR SINE MIR -76 186 2 371 277 43 77 chr1 25380383 25380618 -217283735 + MIR SINE MIR 28 254 -8 350 330 0 0 chr1 25380793 25380896 -217283457 + CT-rich Low_complexity Low_complexity 3 105 0 443 221 133 33 chr1 25380951 25381132 -217283221 + L2 LINE L2 3113 3311 -2 289 213 199 22 chr1 25381256 25381392 -217282961 + MIR SINE MIR 38 197 -65 253 384 9 0 chr1 25381547 25381659 -217282694 - MIR SINE MIR -1 261 149 * 532 246 73 85 chr1 25381649 25381909 -217282444 + L2 LINE L2 3057 3313 0 254 238 127 0 chr1 25381887 25381950 -217282403 - MIR SINE MIR -118 144 74 * 636 323 30 4 chr1 25382641 25382873 -217281480 + MIR SINE MIR 7 244 -18 228 259 0 0 chr1 25383084 25383142 -217281211 + MIR SINE MIR 37 94 -114 292 328 53 0 chr1 25383196 25383327 -217281026 - MIR SINE MIR 0 262 125 295 343 22 8 chr1 25383985 25384119 -217280234 + MIR SINE MIR 48 183 -79 758 127 24 160 chr1 25384393 25384547 -217279806 + MER5A DNA MER1_type 1 120 -69 1076 187 0 0 chr1 25384547 25384761 -217279592 - L1MA6 LINE L1 -9 6291 6078 758 127 24 160 chr1 25384761 25384819 -217279534 + MER5A DNA MER1_type 120 184 -5 735 235 59 15 chr1 25384849 25385053 -217279300 + MIR SINE MIR 50 262 0 198 200 0 22 chr1 25385131 25385176 -217279177 + L2 LINE L2 3014 3057 -215 404 148 115 25 chr1 25386161 25386283 -217278070 + L2 LINE L2 2906 3038 -234 430 344 0 0 chr1 25386924 25387087 -217277266 - MER117 DNA MER1_type -34 163 1 637 283 132 0 chr1 25387996 25388208 -217276145 - MIR SINE MIR -11 251 12 462 263 75 0 chr1 25388217 25388350 -217276003 + MIR SINE MIR 106 248 -14 460 286 54 22 chr1 25388366 25388551 -217275802 - MIR SINE MIR -64 198 8 2330 84 59 11 chr1 25388648 25389006 -217275347 - THE1C LTR MaLR 0 375 1 787 214 167 0 chr1 25389234 25389468 -217274885 - ORSL DNA AcHobo 0 275 3 489 17 0 0 chr1 25389477 25389535 -217274818 + (CA)n Simple_repeat Simple_repeat 2 59 0 1397 206 0 18 chr1 25389938 25390220 -217274133 + AluSx SINE Alu 23 299 -13 1418 254 44 106 chr1 25390403 25391085 -217273268 + MLT1E2-int LTR MaLR 692 1331 -40 2239 80 4 0 chr1 25391128 25391403 -217272950 + AluSp SINE Alu 29 304 -9 388 209 82 73 chr1 25391441 25391551 -217272802 + MLT1E2 LTR MaLR 3 113 -513 579 260 61 6 chr1 25391551 25391732 -217272621 + MSTD LTR MaLR 1 191 -205 1834 148 54 3 chr1 25391733 25392030 -217272323 + AluSx SINE Alu 1 312 0 272 104 42 0 chr1 25392039 25392087 -217272266 + GA-rich Low_complexity Low_complexity 4 53 0 1253 50 11 11 chr1 25392087 25392267 -217272086 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1134 153 5 11 chr1 25392395 25392585 -217271768 + MSTD LTR MaLR 208 396 0 * 1507 214 49 49 chr1 25392585 25393056 -217271297 + MLT1E2 LTR MaLR 109 624 0 352 355 26 19 chr1 25393137 25393292 -217271061 + MIR SINE MIR 86 241 -21 230 223 140 76 chr1 25393716 25393873 -217270480 - L1ME4a LINE L1 -18 6103 5937 850 228 14 38 chr1 25393874 25394040 -217270313 - MER58A DNA MER1_type -2196 224 63 1907 157 17 10 chr1 25394040 25394340 -217270013 + AluJb SINE Alu 1 302 -10 850 228 14 38 chr1 25394340 25394384 -217269969 - MER58A DNA MER1_type -2357 63 19 1047 236 75 13 chr1 25394518 25394823 -217269530 - MER33 DNA MER1_type 0 324 1 1365 165 13 25 chr1 25395066 25395302 -217269051 + AluJo SINE Alu 48 280 -32 404 277 215 11 chr1 25395464 25395641 -217268712 + MIR SINE MIR 7 219 -43 1100 249 138 2 chr1 25396506 25396935 -217267418 + LTR16C LTR ERVL 5 491 0 448 250 18 9 chr1 25398331 25398443 -217265910 + MIR SINE MIR 26 138 -70 222 310 14 0 chr1 25399427 25399498 -217264855 - MIR SINE MIR -56 152 81 209 105 0 26 chr1 25399651 25399689 -217264664 + (CA)n Simple_repeat Simple_repeat 1 37 0 2610 58 0 7 chr1 25399953 25400261 -217264092 - AluSq SINE Alu -7 306 1 244 172 11 20 chr1 25400966 25401035 -217263318 - MER91 DNA MER1_type 0 140 1 301 239 15 0 chr1 25401505 25401572 -217262781 - MIR SINE MIR -76 132 65 268 217 72 14 chr1 25402571 25402662 -217261691 + MIR SINE MIR 53 145 -63 635 226 84 32 chr1 25402772 25402962 -217261391 + MIR SINE MIR 6 205 -57 230 307 13 0 chr1 25402981 25403056 -217261297 + (CTA)n Simple_repeat Simple_repeat 2 77 0 2418 79 0 13 chr1 25403293 25403597 -217260756 - AluY SINE Alu -11 300 1 583 274 73 27 chr1 25403911 25404130 -217260223 + MIR SINE MIR 2 230 -32 194 239 326 0 chr1 25404150 25404242 -217260111 - MIR3 SINE MIR -51 157 36 433 294 21 42 chr1 25405295 25405438 -217258915 - MIR SINE MIR -67 195 56 462 309 73 0 chr1 25405862 25406027 -217258326 + MIR SINE MIR 11 187 -75 274 295 25 8 chr1 25406382 25406504 -217257849 + CT-rich Low_complexity Low_complexity 1 124 0 629 193 62 57 chr1 25407333 25407509 -217256844 + AluJb SINE Alu 135 311 -1 292 241 25 0 chr1 25408767 25408846 -217255507 + MIR SINE MIR 66 146 -62 358 280 88 32 chr1 25409006 25409180 -217255173 - MIR SINE MIR -62 146 3 678 217 82 45 chr1 25409234 25409478 -217254875 - MIR SINE MIR -11 251 4 336 343 30 15 chr1 25410193 25410327 -217254026 - MIR SINE MIR -75 187 52 594 262 44 44 chr1 25411247 25411506 -217252847 - MIR SINE MIR -5 257 4 512 277 51 75 chr1 25411561 25411814 -217252539 - L3 LINE CR1 -1 1576 1330 516 301 25 20 chr1 25411996 25412192 -217252161 - MIR SINE MIR -7 255 59 249 220 0 34 chr1 25412251 25412310 -217252043 + MIR SINE MIR 77 133 -75 444 299 0 0 chr1 25412532 25412639 -217251714 - MIR SINE MIR -15 247 141 393 234 131 29 chr1 25412853 25413028 -217251325 + L1ME4a LINE L1 5929 6121 0 534 250 106 6 chr1 25413488 25413648 -217250705 - MIR SINE MIR -1 261 86 412 259 184 13 chr1 25414826 25414984 -217249369 - MIR SINE MIR -12 250 66 220 246 53 0 chr1 25415683 25415740 -217248613 + MIR SINE MIR 191 250 -12 505 250 10 0 chr1 25416160 25416260 -217248093 + MIR SINE MIR 51 151 -111 268 317 67 25 chr1 25416280 25416400 -217247953 + L2 LINE L2 3145 3269 -3 288 220 23 28 chr1 25416414 25416591 -217247762 + (TGGG)n Simple_repeat Simple_repeat 3 178 0 195 294 59 0 chr1 25417255 25417323 -217247030 + MIR SINE MIR 158 229 -33 185 62 0 31 chr1 25418175 25418207 -217246146 + (TA)n Simple_repeat Simple_repeat 2 32 0 181 204 19 56 chr1 25418675 25418729 -217245624 + MIR SINE MIR 25 76 -132 574 227 97 0 chr1 25418752 25418906 -217245447 - MER63A DNA MER1_type -10 200 32 2486 88 0 0 chr1 25418937 25419243 -217245110 - AluSg SINE Alu -4 306 1 2461 73 10 0 chr1 25419282 25419583 -217244770 - AluY SINE Alu -7 304 1 191 163 61 41 chr1 25419914 25419963 -217244390 + MIR3 SINE MIR 159 208 0 827 176 39 44 chr1 25419992 25420197 -217244156 + MER96B DNA MER1_type? 21 224 -193 780 186 36 12 chr1 25420443 25420610 -217243743 + MER5B DNA MER1_type 7 177 -1 207 114 0 0 chr1 25421146 25421181 -217243172 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 284 333 101 0 chr1 25421735 25421873 -217242480 - MIR3 SINE MIR -21 187 36 200 289 207 0 chr1 25423048 25423169 -217241184 + MIR3 SINE MIR 14 159 -49 2123 128 10 13 chr1 25423207 25423512 -217240841 + AluSx SINE Alu 1 304 -8 389 225 39 62 chr1 25424254 25424383 -217239970 + MIR SINE MIR 120 245 -17 712 247 37 11 chr1 25424410 25424600 -217239753 + MER117 DNA MER1_type 1 195 -2 582 227 214 0 chr1 25424810 25424964 -217239389 + MIR3 SINE MIR 22 208 0 316 347 62 0 chr1 25425259 25425403 -217238950 - MIR3 SINE MIR -23 185 33 493 367 48 20 chr1 25425415 25425663 -217238690 + MIR SINE MIR 8 262 0 585 281 31 12 chr1 25426507 25426667 -217237686 + MIR SINE MIR 23 185 -77 227 188 0 0 chr1 25426829 25426889 -217237464 - L2 LINE L2 -296 2976 2917 231 261 31 15 chr1 25427314 25427379 -217236974 + MIR SINE MIR 8 73 -189 260 293 96 54 chr1 25428766 25428933 -217235420 - MIR SINE MIR -66 196 23 184 355 0 0 chr1 25429772 25429848 -217234505 - MIR SINE MIR -58 150 75 391 252 101 22 chr1 25429902 25430041 -217234312 + MER103 DNA DNA 17 166 0 2180 117 17 0 chr1 25430567 25430858 -217233495 - AluSx SINE Alu -16 296 1 403 292 175 7 chr1 25430883 25431037 -217233316 - MIR SINE MIR -70 192 13 2296 124 0 0 chr1 25431743 25432049 -217232304 - AluSx SINE Alu -6 306 1 567 224 83 47 chr1 25432051 25432243 -217232110 - MIR SINE MIR -59 203 5 264 310 171 19 chr1 25432397 25432555 -217231798 + MIR SINE MIR 78 259 -3 206 205 26 0 chr1 25432546 25432585 -217231768 - L2 LINE L2 -2 3270 3231 * 408 312 32 8 chr1 25433077 25433202 -217231151 - MIR SINE MIR -66 196 69 311 317 148 7 chr1 25433201 25433343 -217231010 + MIR SINE MIR 90 251 -11 * 1729 166 6 54 chr1 25433362 25433544 -217230809 - AluJo SINE Alu -14 298 136 2564 58 0 0 chr1 25433544 25433835 -217230518 - AluY SINE Alu -20 291 1 1729 166 6 54 chr1 25433835 25433965 -217230388 - AluJo SINE Alu -176 136 1 303 323 12 12 chr1 25434175 25434342 -217230011 + L1ME LINE L1 5694 5860 -261 2192 126 0 10 chr1 25434350 25434652 -217229701 + AluSx SINE Alu 1 299 -13 190 283 113 38 chr1 25434905 25434940 -217229413 + MIR SINE MIR 36 67 -195 2321 94 0 0 chr1 25434940 25435256 -217229097 + AluSx SINE Alu 1 316 0 190 283 113 38 chr1 25435256 25435325 -217229028 + MIR SINE MIR 67 149 -113 225 284 159 0 chr1 25435371 25435459 -217228894 + MIR SINE MIR 154 255 -7 485 267 53 8 chr1 25436077 25436208 -217228145 + MIR SINE MIR 13 149 -113 362 304 39 0 chr1 25437114 25437216 -217227137 + MIR3 SINE MIR 50 155 -53 2587 67 0 3 chr1 25437291 25437603 -217226750 - AluY SINE Alu 0 311 1 2055 146 0 3 chr1 25437667 25437968 -217226385 - AluJb SINE Alu -10 302 3 2286 121 0 0 chr1 25439068 25439365 -217224988 - AluSx SINE Alu -15 297 1 244 305 11 53 chr1 25439612 25439707 -217224646 - L2 LINE L2 0 3272 3182 638 314 128 44 chr1 25439902 25440023 -217224330 + L2 LINE L2 2597 2707 -606 2048 99 42 28 chr1 25440023 25440307 -217224046 + AluSg SINE Alu 1 288 -22 638 314 128 44 chr1 25440307 25440758 -217223595 + L2 LINE L2 2707 3208 -105 524 263 58 13 chr1 25440895 25441051 -217223302 + MIR SINE MIR 79 241 -21 180 0 0 0 chr1 25441054 25441074 -217223279 + (TCC)n Simple_repeat Simple_repeat 2 21 0 1170 201 33 15 chr1 25441123 25441396 -217222957 + MER33 DNA MER1_type 6 283 -41 2254 79 32 0 chr1 25441398 25441678 -217222675 + AluY SINE Alu 1 289 -22 21 36 0 0 chr1 25441721 25441749 -217222604 + AT_rich Low_complexity Low_complexity 1 28 0 756 286 55 8 chr1 25442004 25442242 -217222111 - MIR SINE MIR -12 250 2 219 188 0 21 chr1 25442379 25442427 -217221926 - MIR SINE MIR -111 151 105 386 221 236 16 chr1 25444062 25444189 -217220164 - MIR SINE MIR -74 188 34 208 276 113 0 chr1 25445482 25445586 -217218767 - MIR SINE MIR -75 133 34 1971 163 3 3 chr1 25445951 25446257 -217218096 - AluJo SINE Alu -6 306 1 275 347 91 15 chr1 25447095 25447294 -217217059 - MIR SINE MIR -40 222 9 374 291 97 0 chr1 25447831 25447965 -217216388 - MIR SINE MIR -70 192 46 * 402 247 117 53 chr1 25447956 25448138 -217216215 - MIR SINE MIR -45 217 7 562 194 328 0 chr1 25448577 25448763 -217215590 - MIR SINE MIR -13 249 3 365 269 221 0 chr1 25448804 25448949 -217215404 + MIR3 SINE MIR 29 205 -3 731 186 58 6 chr1 25449148 25449304 -217215049 - MER53 DNA DNA -23 166 3 372 276 78 0 chr1 25449518 25449634 -217214719 - MER63 DNA MER1_type -311 751 1 231 229 0 0 chr1 25449981 25450029 -217214324 + MIR SINE MIR 176 223 -39 219 69 0 0 chr1 25450041 25450070 -217214283 + (CACCAT)n Simple_repeat Simple_repeat 1 29 0 199 375 16 0 chr1 25450203 25450267 -217214086 - L2 LINE L2 -8 3264 3200 631 287 78 10 chr1 25450550 25450769 -217213584 + MIR SINE MIR 17 240 -22 295 317 83 14 chr1 25451167 25451312 -217213041 - MIR3 SINE MIR -6 202 48 434 279 57 0 chr1 25451888 25452010 -217212343 - MIR3 SINE MIR -21 187 59 228 224 0 0 chr1 25452516 25452565 -217211788 - L2 LINE L2 -3 3269 3221 508 230 137 12 chr1 25452568 25452729 -217211624 + MIR SINE MIR 82 262 0 360 331 76 0 chr1 25452965 25453137 -217211216 - MIR3 SINE MIR -3 205 21 2014 115 21 21 chr1 25453477 25453763 -217210590 - AluSx SINE Alu -26 286 1 1788 163 10 13 chr1 25453844 25454022 -217210331 - AluJo SINE Alu -12 300 122 198 0 0 0 chr1 25454022 25454044 -217210309 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 1788 163 10 13 chr1 25454044 25454166 -217210187 - AluJo SINE Alu -190 122 1 2099 171 37 17 chr1 25455427 25455837 -217208516 + LTR52 LTR ERVL 1 418 -3 413 316 47 18 chr1 25456051 25456222 -217208131 - MIR SINE MIR -84 178 3 5132 241 56 17 chr1 25456755 25458449 -217205904 + L1ME3A LINE L1 63 1822 -4574 2584 59 0 0 chr1 25458473 25458776 -217205577 - AluY SINE Alu -8 303 1 21 57 0 0 chr1 25458779 25458814 -217205539 + AT_rich Low_complexity Low_complexity 1 35 0 235 73 171 0 chr1 25458826 25458867 -217205486 + Alu SINE Alu 1 48 -255 1186 139 0 0 chr1 25458875 25459040 -217205313 + AluSg/x SINE Alu 131 295 -17 1060 176 10 10 chr1 25459046 25459245 -217205108 + L1ME3A LINE L1 1868 2066 -4330 238 111 83 0 chr1 25459248 25459284 -217205069 - MER58A DNA MER1_type -1 223 185 475 29 14 29 chr1 25459286 25459356 -217204997 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1019 138 13 13 chr1 25459368 25459520 -217204833 - FRAM SINE Alu -26 150 1 1007 226 0 0 chr1 25459520 25459706 -217204647 - MER58A DNA MER1_type -33 191 6 1898 237 53 6 chr1 25459711 25460410 -217203943 + L1ME3A LINE L1 2057 2740 -3475 991 253 51 22 chr1 25460384 25460740 -217203613 + L1ME3A LINE L1 3626 3991 -2224 * 2377 209 55 16 chr1 25460734 25461293 -217203060 - L1ME1 LINE L1 -253 5913 5333 * 3216 233 73 62 chr1 25461290 25462039 -217202314 + L1ME3A LINE L1 3970 4710 -1521 503 140 9 56 chr1 25462039 25462146 -217202207 + L1MA5 LINE L1 6199 6300 0 3216 233 73 62 chr1 25462146 25462914 -217201439 + L1ME3A LINE L1 4710 5510 -721 2429 186 63 49 chr1 25462918 25463586 -217200767 + L1ME3A LINE L1 5563 6239 0 1984 126 30 10 chr1 25464730 25465031 -217199322 - AluSq SINE Alu -6 307 1 984 217 155 10 chr1 25465036 25465351 -217199002 - L1MB8 LINE L1 0 6247 5885 629 132 270 6 chr1 25465346 25465505 -217198848 - L1MB8 LINE L1 -639 5594 5394 * 1735 147 56 0 chr1 25465535 25465820 -217198533 + AluJo SINE Alu 12 312 0 8408 209 60 28 chr1 25465851 25468048 -217196305 - L1MB8 LINE L1 -827 5388 3105 1989 91 4 4 chr1 25468048 25468301 -217196052 - AluSq SINE Alu -59 254 2 8408 209 60 28 chr1 25468301 25468530 -217195823 - L1MB8 LINE L1 -3110 3105 2885 4883 235 64 78 chr1 25468536 25469891 -217194462 - L1MB8 LINE L1 -3467 2748 1376 779 188 17 33 chr1 25469891 25470072 -217194281 - L1MB3 LINE L1 -2 6181 6004 4883 235 64 78 chr1 25470072 25470488 -217193865 - L1MB8 LINE L1 -4839 1376 956 2171 96 17 0 chr1 25470488 25470780 -217193573 - AluSg1 SINE Alu -12 297 1 4883 235 64 78 chr1 25470780 25471745 -217192608 - L1MB8 LINE L1 -5259 956 93 1810 161 29 0 chr1 25472130 25472410 -217191943 + AluJb SINE Alu 1 288 -24 4381 168 12 4 chr1 25472566 25473292 -217191061 + MER44D DNA MER2_type 1 604 -1 2179 100 0 4 chr1 25473373 25473683 -217190670 + AluSc SINE Alu 1 309 0 399 235 50 8 chr1 25473961 25474080 -217190273 + MIR SINE MIR 47 170 -92 604 247 134 26 chr1 25474179 25474410 -217189943 - MIR SINE MIR 0 262 7 1692 173 11 11 chr1 25474496 25474779 -217189574 - AluJo SINE Alu -24 288 6 343 300 7 21 chr1 25474936 25475076 -217189277 - L3 LINE CR1 -167 1410 1273 475 208 75 0 chr1 25475106 25475212 -217189141 - MER112 DNA MER1_type -146 114 1 490 199 91 34 chr1 25475395 25475571 -217188782 + L2 LINE L2 3014 3199 -114 766 156 8 0 chr1 25475622 25475744 -217188609 + FLAM_C SINE Alu 2 124 -19 180 0 0 0 chr1 25475801 25475821 -217188532 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 320 347 16 0 chr1 25476254 25476378 -217187975 - MIR3 SINE MIR -49 159 34 2357 77 0 7 chr1 25477092 25477390 -217186963 - AluSx SINE Alu -16 296 1 187 309 108 44 chr1 25477509 25477576 -217186777 + L2 LINE L2 2715 2776 -538 2123 94 30 3 chr1 25477576 25477874 -217186479 - AluJb SINE Alu -6 306 1 187 309 108 44 chr1 25477874 25478010 -217186343 + L2 LINE L2 2776 2931 -383 239 280 0 27 chr1 25480909 25480984 -217183369 + L2 LINE L2 3200 3272 0 438 290 36 0 chr1 25481079 25481217 -217183136 - MIR SINE MIR -52 210 68 1521 157 92 0 chr1 25481404 25481665 -217182688 + AluJo SINE Alu 12 296 -16 269 194 90 0 chr1 25481742 25481809 -217182544 - MIR SINE MIR -109 153 81 2187 108 20 0 chr1 25482852 25483147 -217181206 + AluSc SINE Alu 1 301 -8 1863 146 3 17 chr1 25483264 25483559 -217180794 + AluJo SINE Alu 1 291 -21 813 311 34 6 chr1 25483655 25483976 -217180377 - L1ME4a LINE L1 -191 5930 5601 1366 149 39 140 chr1 25484080 25484416 -217179937 + AluJb SINE Alu 1 302 0 414 295 8 8 chr1 25484439 25484568 -217179785 - MIR3 SINE MIR -23 185 57 331 330 0 0 chr1 25484601 25484707 -217179646 - MIR SINE MIR 0 262 157 317 246 119 24 chr1 25484711 25484837 -217179516 + MIR SINE MIR 123 260 -2 * 510 277 20 7 chr1 25484835 25484983 -217179370 - MIR SINE MIR -105 157 8 537 238 14 28 chr1 25485339 25485472 -217178881 + MIR3 SINE MIR 29 159 -49 225 314 0 0 chr1 25485472 25485542 -217178811 - MER5B DNA MER1_type -3 175 106 684 246 38 11 chr1 25485919 25486102 -217178251 - L1ME3A LINE L1 -7 6163 5976 1064 190 99 74 chr1 25486368 25486418 -217177935 - MER74B LTR ERVL -67 555 508 2029 51 47 8 chr1 25486418 25486675 -217177678 + AluY SINE Alu 16 282 -29 1064 190 99 74 chr1 25486675 25487069 -217177284 - MER74B LTR ERVL -114 508 2 261 296 130 12 chr1 25487278 25487440 -217176913 + MIR SINE MIR 47 227 -35 252 291 0 55 chr1 25487595 25487705 -217176648 - MLT1K LTR MaLR -4 584 481 1373 64 137 20 chr1 25488270 25488474 -217175879 - MER30 DNA MER1_type 0 230 3 227 254 45 15 chr1 25488587 25488654 -217175699 + MIR SINE MIR 5 73 -189 314 174 65 2 chr1 25488655 25488740 -217175613 - AluJ/FRAM SINE Alu -1 301 221 561 205 24 8 chr1 25489069 25489196 -217175157 - MIR SINE MIR -76 186 58 278 141 320 0 chr1 25489261 25489339 -217175014 - MER94 DNA DNA 0 134 32 1741 135 0 0 chr1 25489339 25489583 -217174770 - AluSx SINE Alu -12 300 57 3590 122 43 46 chr1 25490843 25491018 -217173335 + MER39B LTR ERV1 1 175 -478 1728 121 29 46 chr1 25491018 25491299 -217173054 + AluJb SINE Alu 11 286 -26 420 20 0 0 chr1 25491299 25491348 -217173005 + (GA)n Simple_repeat Simple_repeat 2 50 0 3590 122 43 46 chr1 25491348 25491826 -217172527 + MER39B LTR ERV1 173 653 0 334 167 0 0 chr1 25492118 25492172 -217172181 - MER116 DNA Mariner -1 79 26 1577 96 0 10 chr1 25492172 25492380 -217171973 + AluSx SINE Alu 1 206 -106 620 211 94 0 chr1 25492432 25492603 -217171750 - Charlie2a DNA MER1_type -169 2693 2507 * 1173 220 33 23 chr1 25492596 25492896 -217171457 - MER93b LTR ERV1 -59 314 12 2009 197 124 98 chr1 25492903 25493277 -217171076 - Charlie2a DNA MER1_type -400 2462 2099 2300 104 3 25 chr1 25493277 25493594 -217170759 - AluSq SINE Alu -3 310 1 2009 197 124 98 chr1 25493594 25494129 -217170224 - Charlie2a DNA MER1_type -763 2099 1529 725 264 92 21 chr1 25494128 25494412 -217169941 - Charlie2a DNA MER1_type -2388 474 171 * 186 259 19 0 chr1 25494911 25494965 -217169388 + L2 LINE L2 3008 3062 -251 2282 84 11 0 chr1 25495186 25495471 -217168882 - AluSp SINE Alu -25 288 1 205 254 32 0 chr1 25495548 25495611 -217168742 - MIR SINE MIR 0 262 198 1110 195 85 0 chr1 25495614 25495850 -217168503 + MIR SINE MIR 1 256 -6 279 150 0 0 chr1 25496032 25496072 -217168281 - MER103 DNA DNA -77 89 50 397 310 60 23 chr1 25496085 25496301 -217168052 - MIR SINE MIR -25 237 14 3064 198 31 38 chr1 25496826 25498381 -217165972 + L1ME4a LINE L1 2049 5293 -1089 751 232 26 55 chr1 25498399 25498671 -217165682 - L1MDa LINE L1 -4071 2471 2208 359 183 49 0 chr1 25498667 25498749 -217165604 + L1ME4a LINE L1 5330 5415 -967 * 263 261 270 0 chr1 25498747 25498862 -217165491 - L1MDa LINE L1 -5919 621 476 * 2117 143 28 25 chr1 25498862 25499218 -217165135 - MLT1A1 LTR MaLR 0 365 9 1727 167 20 68 chr1 25499233 25499531 -217164822 - L1MDa LINE L1 -6145 395 119 2284 93 0 32 chr1 25499531 25499843 -217164510 - AluSq SINE Alu -11 302 1 1727 167 20 68 chr1 25499843 25499940 -217164413 - L1MDa LINE L1 -6421 119 19 2417 59 0 3 chr1 25500014 25500303 -217164050 + AluY SINE Alu 1 288 -23 182 196 22 0 chr1 25501361 25501407 -217162946 - MIR SINE MIR -126 82 36 851 281 44 35 chr1 25501933 25502056 -217162297 + L1ME4a LINE L1 5839 5959 -398 941 165 41 16 chr1 25502056 25502250 -217162103 + L1PA16 LINE L1 5965 6163 -3 851 281 44 35 chr1 25502250 25502560 -217161793 + L1ME4a LINE L1 5959 6276 -81 21 36 0 0 chr1 25502622 25502650 -217161703 + AT_rich Low_complexity Low_complexity 1 28 0 923 276 60 3 chr1 25503831 25504132 -217160221 + LTR16C LTR ERVL 173 490 -1 217 274 75 55 chr1 25504769 25504915 -217159438 + MER5A DNA MER1_type 41 189 0 790 236 31 0 chr1 25505413 25505608 -217158745 - MIR SINE MIR -36 226 26 1536 170 3 70 chr1 25505715 25506027 -217158326 + AluJo SINE Alu 3 293 -19 468 216 11 0 chr1 25506053 25506141 -217158212 - AluS SINE Alu -217 95 7 715 232 76 16 chr1 25506492 25506677 -217157676 - MER117 DNA MER1_type -1 196 1 437 174 0 70 chr1 25507426 25507512 -217156841 + MER63 DNA MER1_type 42 747 -89 343 217 58 80 chr1 25507572 25507710 -217156643 - MIR3 SINE MIR -54 154 20 465 284 135 11 chr1 25507812 25508010 -217156343 + MIR SINE MIR 19 245 -17 293 250 60 36 chr1 25508448 25508532 -217155821 + MER5B DNA MER1_type 1 86 -92 24 0 0 0 chr1 25508882 25508906 -217155447 + AT_rich Low_complexity Low_complexity 1 24 0 183 250 181 0 chr1 25508915 25508987 -217155366 - L3 LINE CR1 -908 669 585 739 328 92 35 chr1 25509027 25509114 -217155239 - L2 LINE L2 -27 3286 3205 342 0 0 0 chr1 25509114 25509152 -217155201 + (TG)n Simple_repeat Simple_repeat 2 39 0 739 328 92 35 chr1 25509152 25509303 -217155050 - L2 LINE L2 -108 3205 3064 4726 72 10 3 chr1 25509303 25509925 -217154428 - L1PA11 LINE L1 -2 6172 5547 739 328 92 35 chr1 25509925 25510170 -217154183 - L2 LINE L2 -249 3064 2779 284 275 56 63 chr1 25510160 25510302 -217154051 - MER5B DNA MER1_type -36 142 2 * 303 319 44 0 chr1 25510360 25510473 -217153880 + L1MC4 LINE L1 7924 8041 -1 187 319 0 0 chr1 25510485 25510532 -217153821 - MER5B DNA MER1_type -130 48 2 712 270 56 0 chr1 25510782 25510960 -217153393 - MER91A DNA MER1_type -1 195 8 264 247 200 12 chr1 25510975 25511060 -217153293 - L2 LINE L2 -1 3271 3171 2470 229 111 6 chr1 25511648 25512321 -217152032 + L1ME3A LINE L1 5417 6160 -10 22 94 0 0 chr1 25512322 25512386 -217151967 + AT_rich Low_complexity Low_complexity 1 64 0 1345 235 53 16 chr1 25512854 25513173 -217151180 + L1ME3A LINE L1 5518 5848 -322 446 312 118 16 chr1 25513599 25513785 -217150568 - MIR SINE MIR -25 237 33 253 189 108 40 chr1 25514062 25514136 -217150217 + MIR SINE MIR 72 150 -112 277 217 0 0 chr1 25514284 25514330 -217150023 - L2 LINE L2 -8 3264 3219 1733 172 0 25 chr1 25514458 25514772 -217149581 + AluJb SINE Alu 1 306 -6 397 279 11 15 chr1 25515345 25515538 -217148815 + MIR SINE MIR 1 262 0 475 256 15 23 chr1 25515563 25515696 -217148657 - MIR3 SINE MIR -62 146 15 1719 98 105 51 chr1 25515750 25516046 -217148307 - AluSx SINE Alu 0 312 1 227 284 28 78 chr1 25516718 25516859 -217147494 - L2 LINE L2 -86 3227 3094 862 191 12 0 chr1 25517069 25517237 -217147116 - FRAM SINE Alu -8 168 1 1983 163 20 8 chr1 25517589 25517946 -217146407 - L1MB8 LINE L1 0 6178 5818 254 306 81 6 chr1 25518396 25518556 -217145797 + Charlie7 DNA MER1_type 2435 2606 -6 782 158 0 8 chr1 25518582 25518715 -217145638 + AluJo SINE Alu 2 133 -169 1229 124 0 60 chr1 25519513 25519714 -217144639 + AluSx SINE Alu 1 189 -123 1987 127 3 0 chr1 25519795 25520106 -217144247 - AluSx SINE Alu 0 312 1 667 230 142 5 chr1 25520563 25520767 -217143586 - MIR SINE MIR -30 232 1 755 182 74 0 chr1 25521189 25521337 -217143016 + AluJo SINE Alu 136 294 -18 387 287 90 7 chr1 25522160 25522297 -217142056 + MIR SINE MIR 38 184 -61 441 236 176 6 chr1 25523139 25523304 -217141049 + L1MD3 LINE L1 7789 7981 -14 563 326 81 27 chr1 25523818 25524302 -217140051 + L1MC4a LINE L1 5376 5885 -1923 2342 80 0 0 chr1 25524304 25524603 -217139750 + AluSp SINE Alu 1 299 -14 2032 115 14 7 chr1 25524629 25524924 -217139429 + AluSq SINE Alu 1 297 -16 1883 218 37 70 chr1 25524929 25524989 -217139364 + L1ME2 LINE L1 5610 5670 -494 3113 58 0 5 chr1 25524989 25525366 -217138987 - THE1C LTR MaLR 0 375 1 1883 218 37 70 chr1 25525366 25525529 -217138824 + L1ME2 LINE L1 5670 5837 -327 2010 117 0 0 chr1 25525529 25525820 -217138533 + AluSx SINE Alu 1 291 -21 1883 218 37 70 chr1 25525820 25525860 -217138493 + L1ME2 LINE L1 5837 5877 -287 1586 81 2 229 chr1 25525860 25526257 -217138096 + AluSx SINE Alu 1 307 -5 1883 218 37 70 chr1 25526257 25526564 -217137789 + L1ME2 LINE L1 5877 6163 -1 185 250 0 11 chr1 25528399 25528487 -217135866 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 355 231 15 15 chr1 25528683 25528780 -217135573 + MIR SINE MIR 17 115 -93 802 185 20 0 chr1 25529166 25529317 -217135036 + MER90 LTR ERV1 1 154 -421 29 0 0 0 chr1 25529345 25529374 -217134979 + AT_rich Low_complexity Low_complexity 1 29 0 2047 198 36 7 chr1 25529376 25529795 -217134558 + MER90 LTR ERV1 184 614 0 602 244 68 34 chr1 25530001 25530177 -217134176 + MIR SINE MIR 9 190 -72 445 249 169 80 chr1 25530207 25530226 -217134127 + MIR SINE MIR 17 33 -229 2285 66 0 44 chr1 25530226 25530543 -217133810 + AluY SINE Alu 1 303 -8 445 249 169 80 chr1 25530543 25530748 -217133605 + MIR SINE MIR 33 261 -1 590 229 33 8 chr1 25530792 25530914 -217133439 + FLAM_A SINE Alu 1 125 -8 1666 134 3 31 chr1 25531069 25531393 -217132960 + AluJb SINE Alu 1 316 0 558 265 22 43 chr1 25533352 25533537 -217130816 - MER5A DNA MER1_type -4 185 5 265 289 202 9 chr1 25533929 25534043 -217130310 - L2 LINE L2 -8 3264 3129 1807 137 10 26 chr1 25534336 25534643 -217129710 + AluJo SINE Alu 1 302 -10 978 162 0 0 chr1 25536073 25536221 -217128132 + MER3 DNA MER1_type 1 148 -61 700 179 113 67 chr1 25536315 25536337 -217128016 + MIR SINE MIR 14 34 -228 2173 87 3 35 chr1 25536337 25536649 -217127704 + AluSp SINE Alu 1 302 -11 700 179 113 67 chr1 25536649 25536821 -217127532 + MIR SINE MIR 34 217 -45 670 288 84 9 chr1 25537046 25537176 -217127177 - MIR SINE MIR -12 250 131 1715 151 3 51 chr1 25537176 25537487 -217126866 + AluJo SINE Alu 1 296 -16 670 288 84 9 chr1 25537487 25537582 -217126771 - MIR SINE MIR -131 131 8 2341 89 0 0 chr1 25537773 25538077 -217126276 + AluSc SINE Alu 1 304 -5 23 0 0 0 chr1 25538598 25538621 -217125732 + AT_rich Low_complexity Low_complexity 1 23 0 246 226 75 62 chr1 25539053 25539103 -217125250 - L1M LINE L1 -2391 5417 5369 2237 109 0 0 chr1 25539103 25539406 -217124947 - AluSq SINE Alu -10 303 1 246 226 75 62 chr1 25539406 25539501 -217124852 - L1M LINE L1 -2439 5369 5270 365 301 127 37 chr1 25539833 25540155 -217124198 - L1 LINE L1 -1116 5030 4680 200 279 154 39 chr1 25540379 25540483 -217123870 - MIR SINE MIR -70 138 23 711 270 80 26 chr1 25540507 25540733 -217123620 - MIR SINE MIR -7 255 18 28 29 0 0 chr1 25540764 25540799 -217123554 + AT_rich Low_complexity Low_complexity 1 35 0 2197 116 3 0 chr1 25540928 25541239 -217123114 - AluSq SINE Alu 0 313 2 1528 162 9 58 chr1 25541247 25541575 -217122778 - AluJb SINE Alu 0 312 1 418 139 63 0 chr1 25541603 25541682 -217122671 - LTR50 LTR ERVL -2 793 710 939 124 0 0 chr1 25541684 25541813 -217122540 + FLAM_C SINE Alu 1 129 -14 854 192 69 54 chr1 25541822 25542077 -217122276 - LTR50 LTR ERVL -89 706 445 2264 103 0 0 chr1 25542077 25542379 -217121974 + AluSx SINE Alu 1 302 -10 854 192 69 54 chr1 25542379 25542399 -217121954 - LTR50 LTR ERVL -350 445 427 2193 101 0 0 chr1 25542708 25543004 -217121349 + AluSx SINE Alu 1 296 -16 273 244 47 35 chr1 25543318 25543404 -217120949 + HAL1 LINE L1 811 897 -1610 1462 126 0 160 chr1 25543411 25543767 -217120586 + AluJb SINE Alu 1 299 -13 2125 94 3 0 chr1 25543857 25544144 -217120209 - AluSq SINE Alu -25 288 1 182 256 179 13 chr1 25544182 25544260 -217120093 - L2 LINE L2 -21 3251 3161 2275 156 54 20 chr1 25544446 25544888 -217119465 - MER45B DNA AcHobo -21 1019 563 450 95 0 0 chr1 25544888 25544951 -217119402 + FRAM/FAM SINE Alu 19 81 -95 951 162 16 22 chr1 25544951 25545136 -217119217 + AluJo SINE Alu 114 297 -15 1919 201 74 88 chr1 25545136 25545409 -217118944 - MER45B DNA AcHobo -465 575 300 2160 94 0 16 chr1 25545409 25545718 -217118635 + AluSx SINE Alu 1 304 -8 1689 131 0 32 chr1 25545719 25546002 -217118351 - AluSx SINE Alu -38 274 1 1919 201 74 88 chr1 25546002 25546309 -217118044 - MER45B DNA AcHobo -739 301 1 1818 131 0 0 chr1 25546737 25547005 -217117348 + AluSx SINE Alu 1 268 -44 1722 158 13 3 chr1 25547696 25547999 -217116354 + AluJo SINE Alu 1 306 -6 1264 158 87 38 chr1 25548067 25548332 -217116021 - AluJo SINE Alu -34 278 1 1820 26 9 22 chr1 25548521 25548751 -217115602 - L1PA6 LINE L1 0 6154 5928 649 220 119 37 chr1 25548850 25549068 -217115285 + MIR SINE MIR 21 256 -6 1911 89 3 56 chr1 25549074 25549402 -217114951 - AluSg SINE Alu 0 312 1 278 100 0 0 chr1 25549725 25549765 -217114588 + LTR50 LTR ERVL 2 41 -754 709 199 294 21 chr1 25549795 25550122 -217114231 + LTR50 LTR ERVL 15 430 -365 520 180 72 0 chr1 25550131 25550270 -217114083 - L1MB7 LINE L1 0 6184 6036 332 181 11 106 chr1 25550260 25550354 -217113999 + L1MB3 LINE L1 5471 5555 -619 * 1732 100 52 0 chr1 25550354 25550603 -217113750 + AluSg SINE Alu 43 304 -6 568 99 0 63 chr1 25550612 25550754 -217113599 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 2353 158 18 87 chr1 25550754 25550811 -217113542 + L1MB3 LINE L1 5551 5610 -573 2053 108 10 0 chr1 25550811 25551106 -217113247 + AluSx SINE Alu 1 298 -14 2353 158 18 87 chr1 25551106 25551206 -217113147 + L1MB3 LINE L1 5610 5715 -468 2697 99 0 8 chr1 25551206 25551571 -217112782 - THE1B LTR MaLR -2 362 1 2353 158 18 87 chr1 25551571 25551728 -217112625 + L1MB3 LINE L1 5715 5881 -302 2313 64 0 10 chr1 25551728 25552024 -217112329 + AluY SINE Alu 1 293 -18 2353 158 18 87 chr1 25552024 25552289 -217112064 + L1MB3 LINE L1 5881 6069 -114 559 159 0 0 chr1 25552289 25552377 -217111976 + FRAM SINE Alu 73 160 -16 230 284 108 0 chr1 25552408 25552510 -217111843 - LTR50 LTR ERVL -119 676 564 518 163 0 0 chr1 25552510 25552608 -217111745 + L1MB3 LINE L1 6085 6182 -1 961 178 93 9 chr1 25552608 25552822 -217111531 - L1MB5 LINE L1 -139 6035 5804 290 200 17 0 chr1 25552827 25552887 -217111466 + LTR50 LTR ERVL 552 612 -183 1375 191 20 31 chr1 25552898 25553417 -217110936 + pTR5 LTR ERV1 772 1332 -1106 3223 151 86 74 chr1 25553433 25554109 -217110244 + LTR12 LTR ERV1 5 688 0 541 232 79 6 chr1 25554124 25554209 -217110144 + LTR50 LTR ERVL 619 696 -99 1331 205 24 24 chr1 25554209 25554507 -217109846 - AluJo SINE Alu -14 298 1 541 232 79 6 chr1 25554507 25554585 -217109768 + LTR50 LTR ERVL 696 794 -1 281 311 57 79 chr1 25555034 25555262 -217109091 - MIR SINE MIR 0 262 40 245 164 16 82 chr1 25555343 25555404 -217108949 + L1ME LINE L1 5534 5590 -531 1377 160 92 18 chr1 25555518 25555675 -217108678 - AluJb SINE Alu -9 303 159 333 0 0 0 chr1 25555675 25555712 -217108641 + (TG)n Simple_repeat Simple_repeat 2 38 0 1377 160 92 18 chr1 25555712 25555836 -217108517 - AluJb SINE Alu -153 159 1 1932 144 41 47 chr1 25555838 25556121 -217108232 + MER47A DNA MER2_type 6 288 -2035 1929 137 3 0 chr1 25556121 25556414 -217107939 + AluSx SINE Alu 1 294 -18 1932 144 41 47 chr1 25556414 25556492 -217107861 + MER47A DNA MER2_type 288 365 -1 1480 148 8 19 chr1 25556713 25556970 -217107383 - AluJb SINE Alu -35 277 24 1789 159 0 13 chr1 25556974 25557275 -217107078 - AluJb SINE Alu -15 297 1 757 265 90 13 chr1 25557555 25557877 -217106476 + L1ME4a LINE L1 5556 5900 -221 1800 123 11 73 chr1 25557955 25558016 -217106337 - MER4A LTR ERV1 -2 662 599 2502 64 0 3 chr1 25558016 25558312 -217106041 + AluY SINE Alu 1 295 -16 1800 123 11 73 chr1 25558312 25558616 -217105737 - MER4A LTR ERV1 -65 599 261 630 72 31 21 chr1 25558616 25558713 -217105640 - MER4A LTR ERV1 -566 98 1 369 272 39 56 chr1 25559185 25559365 -217104988 - L2 LINE L2 -17 3296 3120 775 201 129 68 chr1 25559400 25559663 -217104690 - MLT1J LTR MaLR -2 509 231 2437 107 0 0 chr1 25559667 25559977 -217104376 + AluSg SINE Alu 1 310 0 545 146 42 10 chr1 25560150 25560246 -217104107 + AluJo SINE Alu 36 134 -178 312 181 36 48 chr1 25560258 25560341 -217104012 - MIR SINE MIR -119 143 62 383 188 0 0 chr1 25560521 25560585 -217103768 + L2 LINE L2 3210 3273 -40 1880 188 58 52 chr1 25560602 25560939 -217103414 - L1ME2 LINE L1 -116 6048 5705 1931 129 24 3 chr1 25560939 25561233 -217103120 - AluSq SINE Alu -13 300 1 1880 188 58 52 chr1 25561233 25561412 -217102941 - L1ME2 LINE L1 -459 5705 5529 502 325 12 0 chr1 25562133 25562302 -217102051 + L2 LINE L2 2459 2629 -685 1310 268 63 35 chr1 25562418 25562880 -217101473 - LTR33 LTR ERVL -46 475 1 1118 283 86 8 chr1 25562880 25563160 -217101193 + MLT1K LTR MaLR 76 451 -137 2699 42 0 10 chr1 25563160 25563472 -217100881 + AluY SINE Alu 1 309 -2 1118 283 86 8 chr1 25563472 25563621 -217100732 + MLT1K LTR MaLR 451 587 -1 1948 141 40 13 chr1 25563972 25564276 -217100077 + AluJb SINE Alu 1 312 0 841 126 0 8 chr1 25564750 25564877 -217099476 - FLAM_A SINE Alu -10 132 7 241 240 0 0 chr1 25565232 25565282 -217099071 + GA-rich Low_complexity Low_complexity 3 52 0 255 133 0 0 chr1 25565285 25565330 -217099023 + (GGGGA)n Simple_repeat Simple_repeat 4 48 0 203 148 37 0 chr1 25565781 25565835 -217098518 + C-rich Low_complexity Low_complexity 5 60 0 225 0 0 0 chr1 25566208 25566233 -217098120 + (CGGGG)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr1 25566258 25566282 -217098071 + (A)n Simple_repeat Simple_repeat 1 24 0 1744 144 75 7 chr1 25567220 25567512 -217096841 - AluJb SINE Alu 0 312 1 1738 140 77 0 chr1 25568277 25568562 -217095791 - AluJb SINE Alu 0 312 6 24 32 0 0 chr1 25568872 25568903 -217095450 + AT_rich Low_complexity Low_complexity 1 31 0 379 210 49 12 chr1 25569246 25569327 -217095026 + AluJ/FRAM SINE Alu 219 302 0 1031 191 75 72 chr1 25569398 25569744 -217094609 + L1MC4 LINE L1 7696 8042 0 181 371 89 19 chr1 25570195 25570454 -217093899 + L2 LINE L2 2811 3087 -185 1786 87 35 131 chr1 25570843 25571187 -217093166 + AluSq SINE Alu 1 311 -2 13516 110 41 8 chr1 25571733 25571928 -217092425 - Tigger1 DNA MER2_type -10 2408 2221 1827 156 3 21 chr1 25571928 25572216 -217092137 + AluJb SINE Alu 6 288 -24 13516 110 41 8 chr1 25572216 25574058 -217090295 - Tigger1 DNA MER2_type -197 2221 304 2283 75 0 7 chr1 25574076 25574392 -217089961 + AluSc SINE Alu 1 314 0 1834 160 36 0 chr1 25574578 25574884 -217089469 - Tigger1 DNA MER2_type -2101 317 1 1999 111 4 0 chr1 25575146 25575407 -217088946 + AluSx SINE Alu 35 296 -16 2454 69 0 0 chr1 25576000 25576289 -217088064 + AluY SINE Alu 1 289 -22 687 136 7 130 chr1 25576311 25576428 -217087925 - AluJo SINE Alu -176 136 41 1935 120 42 11 chr1 25576428 25576711 -217087642 + AluSx SINE Alu 1 292 -20 687 136 7 130 chr1 25576711 25576747 -217087606 - AluJo SINE Alu -271 41 2 2187 123 0 0 chr1 25577731 25578031 -217086322 + AluSx SINE Alu 1 300 -12 286 194 108 43 chr1 25578062 25578155 -217086198 + MER5C DNA MER1_type 226 324 0 333 0 0 0 chr1 25578472 25578509 -217085844 + (TG)n Simple_repeat Simple_repeat 1 37 0 2384 98 0 0 chr1 25578907 25579212 -217085141 + AluSg SINE Alu 1 305 -5 843 141 0 0 chr1 25579227 25579355 -217084998 + FLAM_C SINE Alu 1 128 -5 2169 115 0 31 chr1 25580139 25580461 -217083892 - AluSx SINE Alu 0 312 1 848 142 0 16 chr1 25580755 25580882 -217083471 + FLAM_C SINE Alu 1 125 -8 918 128 0 0 chr1 25581087 25581212 -217083141 + FLAM_C SINE Alu 1 125 -18 1882 165 0 35 chr1 25581627 25581803 -217082550 - AluJb SINE Alu -8 304 123 239 0 32 0 chr1 25581803 25581834 -217082519 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1952 148 0 7 chr1 25581836 25582120 -217082233 - AluSx SINE Alu -30 282 1 1882 165 0 35 chr1 25582120 25582255 -217082098 - AluJb SINE Alu -190 122 1 959 128 0 0 chr1 25582263 25582396 -217081957 - FLAM_C SINE Alu 0 133 1 199 260 20 0 chr1 25582756 25582806 -217081547 + L2 LINE L2 3222 3272 0 2992 71 1 22 chr1 25583420 25583913 -217080440 + L1PA4 LINE L1 4461 6178 0 2073 209 25 9 chr1 25583913 25584359 -217079994 + L1 LINE L1 4550 5002 -1144 630 142 9 9 chr1 25584359 25584465 -217079888 + FLAM_A SINE Alu 32 137 -5 256 136 0 0 chr1 25584467 25584511 -217079842 + L1P LINE L1 5002 5045 -1101 2309 118 0 0 chr1 25584610 25584914 -217079439 + AluSx SINE Alu 1 304 -8 983 159 72 0 chr1 25584926 25585133 -217079220 + L1MB4 LINE L1 5958 6179 -1 235 238 16 0 chr1 25585178 25585241 -217079112 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 422 305 67 49 chr1 25585419 25585763 -217078590 + LTR16C LTR ERVL 142 491 0 439 154 13 0 chr1 25586010 25586088 -217078265 - MER116 DNA Mariner -1 79 1 2201 81 0 4 chr1 25586112 25586383 -217077970 - AluSx SINE Alu -16 296 27 458 279 95 0 chr1 25586385 25586543 -217077810 + L1M4 LINE L1 4195 4367 -1779 189 213 0 0 chr1 25586569 25586616 -217077737 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 351 0 0 0 chr1 25586648 25586687 -217077666 + (CA)n Simple_repeat Simple_repeat 2 40 0 648 153 0 0 chr1 25586693 25586791 -217077562 - AluSg/x SINE Alu -19 290 193 21 26 0 26 chr1 25586969 25586988 -217077365 + AT_rich Low_complexity Low_complexity 1 19 -19 1992 96 0 15 chr1 25586988 25587260 -217077093 + AluSx SINE Alu 1 268 -44 21 26 0 26 chr1 25587260 25587279 -217077074 + AT_rich Low_complexity Low_complexity 19 38 0 950 117 0 0 chr1 25587863 25588000 -217076353 - AluSg/x SINE Alu -1 311 175 1342 179 0 0 chr1 25589154 25589366 -217074987 - AluJo SINE Alu -30 282 71 1614 131 112 0 chr1 25590088 25590347 -217074006 - AluSg SINE Alu -22 288 1 1200 272 69 60 chr1 25591305 25592169 -217072184 + L1MEc LINE L1 2153 3003 -3212 817 143 14 14 chr1 25592175 25592315 -217072038 + AluJo SINE Alu 6 145 -167 1498 148 54 40 chr1 25592315 25592593 -217071760 + AluJo SINE Alu 1 282 -30 2376 100 0 0 chr1 25592595 25592895 -217071458 - AluSx SINE Alu -12 300 1 24 0 0 0 chr1 25592898 25592922 -217071431 + AT_rich Low_complexity Low_complexity 1 24 0 664 171 120 0 chr1 25592942 25593059 -217071294 + FLAM_A SINE Alu 1 131 -2 1899 172 0 10 chr1 25593116 25593424 -217070929 + AluJb SINE Alu 2 306 -6 2092 119 4 0 chr1 25593783 25594061 -217070292 + AluSx SINE Alu 11 289 -23 574 193 140 53 chr1 25594680 25594851 -217069502 + MER105 DNA DNA 1 186 -18 2228 116 0 0 chr1 25595249 25595571 -217068782 - AluSx SINE Alu 0 322 1 327 327 27 0 chr1 25595584 25595694 -217068659 - L2 LINE L2 -5 3267 3155 2424 80 10 13 chr1 25595711 25596023 -217068330 + AluY SINE Alu 1 311 0 519 260 41 46 chr1 25596371 25596562 -217067791 + MIR SINE MIR 2 192 -66 2130 135 3 3 chr1 25596562 25596865 -217067488 + AluSx SINE Alu 1 303 -9 2435 69 0 16 chr1 25597365 25597671 -217066682 + AluY SINE Alu 1 301 -10 1427 98 0 0 chr1 25597671 25597854 -217066499 + AluSc SINE Alu 108 290 -19 27 73 0 0 chr1 25600399 25600454 -217063899 + AT_rich Low_complexity Low_complexity 1 55 0 2171 92 10 10 chr1 25600661 25600954 -217063399 + AluSp SINE Alu 1 293 -20 2235 58 0 38 chr1 25601425 25601759 -217062594 - AluY SINE Alu 0 323 1 849 165 0 0 chr1 25601862 25601989 -217062364 + FLAM_A SINE Alu 1 127 -6 244 235 15 15 chr1 25602072 25602140 -217062213 - MIR3 SINE MIR -22 186 119 205 241 52 0 chr1 25604703 25604761 -217059592 - MIR SINE MIR -109 99 39 1702 158 70 0 chr1 25604849 25605122 -217059231 - AluJb SINE Alu -20 292 1 2211 117 3 0 chr1 25605387 25605678 -217058675 - AluSx SINE Alu -20 292 1 443 303 92 35 chr1 25606060 25606301 -217058052 + L1P4 LINE L1 4980 5206 -955 2617 171 22 92 chr1 25606301 25606401 -217057952 - MER41C LTR ERV1 0 554 449 2355 88 7 3 chr1 25606401 25606709 -217057644 - AluSp SINE Alu -4 309 1 2617 171 22 92 chr1 25606709 25606745 -217057608 - MER41C LTR ERV1 -105 449 412 2370 112 0 0 chr1 25606745 25607049 -217057304 + AluSx SINE Alu 1 304 -8 2617 171 22 92 chr1 25607049 25607507 -217056846 - MER41C LTR ERV1 -142 412 1 443 303 92 35 chr1 25607507 25607987 -217056366 + L1P4 LINE L1 5206 5716 -445 1639 185 145 17 chr1 25609091 25609259 -217055094 - MLT1F LTR MaLR 0 542 397 2452 187 72 112 chr1 25609259 25609869 -217054484 + LTR1B LTR ERV1 1 570 -256 2416 68 0 0 chr1 25609869 25610179 -217054174 + AluSc SINE Alu 1 310 0 2452 187 72 112 chr1 25610179 25610427 -217053926 + LTR1B LTR ERV1 570 826 0 1639 185 145 17 chr1 25610427 25610679 -217053674 - MLT1F LTR MaLR -145 397 68 264 242 132 11 chr1 25610867 25610958 -217053395 - MLT1K LTR MaLR -278 310 209 2271 113 0 10 chr1 25611560 25611861 -217052492 + AluSx SINE Alu 4 301 -11 206 257 14 54 chr1 25612042 25612116 -217052237 + L2 LINE L2 3197 3267 -5 2189 139 3 0 chr1 25612339 25612641 -217051712 - AluSx SINE Alu -9 303 1 1385 185 42 8 chr1 25612889 25613149 -217051204 + MER66B LTR ERV1 1 269 -217 315 70 0 0 chr1 25613149 25613192 -217051161 + Alu SINE Alu 1 43 -259 452 292 48 30 chr1 25613239 25613407 -217050946 - MER5B DNA MER1_type 0 178 8 2129 130 0 0 chr1 25613612 25613911 -217050442 - AluSx SINE Alu -13 299 1 511 258 145 32 chr1 25613985 25614042 -217050311 + L2 LINE L2 3107 3156 -157 1962 163 0 0 chr1 25614042 25614342 -217050011 - AluJb SINE Alu -12 300 1 511 258 145 32 chr1 25614342 25614470 -217049883 + L2 LINE L2 3156 3313 0 448 266 89 0 chr1 25614469 25614593 -217049760 - MIR3 SINE MIR -69 139 5 * 353 239 33 0 chr1 25614930 25615022 -217049331 - MIR3 SINE MIR -24 184 90 228 67 0 0 chr1 25615345 25615375 -217048978 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 2032 95 0 53 chr1 25615753 25616038 -217048315 - AluSx SINE Alu -15 297 28 1654 188 3 13 chr1 25616176 25616490 -217047863 - AluJb SINE Alu -1 311 1 276 287 124 74 chr1 25616515 25617057 -217047296 + L2 LINE L2 2737 3309 -4 369 223 173 22 chr1 25617375 25617514 -217046839 - MIR SINE MIR -52 210 51 850 182 6 6 chr1 25617833 25617992 -217046361 + FRAM SINE Alu 1 158 -18 1779 135 35 61 chr1 25617994 25618305 -217046048 + AluSx SINE Alu 1 303 -9 301 338 133 0 chr1 25618456 25618607 -217045746 + MIR3 SINE MIR 37 207 -1 243 284 0 30 chr1 25618590 25618657 -217045696 - L2 LINE L2 -9 3304 3240 * 207 183 0 56 chr1 25619079 25619150 -217045203 + G-rich Low_complexity Low_complexity 3 69 0 364 315 28 0 chr1 25619888 25619996 -217044357 + L2 LINE L2 3158 3268 -4 243 165 16 0 chr1 25621421 25621477 -217042876 + MIR SINE MIR 96 135 -73 2690 46 0 0 chr1 25621506 25621813 -217042540 + AluY SINE Alu 1 307 -4 206 175 25 0 chr1 25621901 25621941 -217042412 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1648 139 12 8 chr1 25622135 25622387 -217041966 + AluJo SINE Alu 46 298 -14 863 202 121 24 chr1 25622599 25622680 -217041673 + ORSL DNA AcHobo 3 75 -200 2145 106 0 45 chr1 25622680 25622992 -217041361 + AluSq SINE Alu 3 300 -13 863 202 121 24 chr1 25622992 25623158 -217041195 + ORSL DNA AcHobo 75 274 -1 2293 103 3 3 chr1 25623256 25623557 -217040796 + AluSx SINE Alu 1 301 -11 632 258 30 6 chr1 25623861 25624028 -217040325 - MIR SINE MIR 0 262 92 388 310 101 16 chr1 25624050 25624179 -217040174 + L2 LINE L2 3133 3272 0 323 293 138 22 chr1 25624622 25624803 -217039550 + HAL1 LINE L1 841 1042 -1465 2417 89 3 3 chr1 25624864 25625177 -217039176 + AluSp SINE Alu 1 313 0 301 350 0 26 chr1 25625641 25625758 -217038595 + L1ME LINE L1 825 938 -5132 431 287 91 48 chr1 25625772 25625852 -217038501 + HAL1b LINE L1 368 443 -905 2373 102 0 13 chr1 25625852 25626167 -217038186 + AluSx SINE Alu 1 311 -1 431 287 91 48 chr1 25626167 25626648 -217037705 + HAL1b LINE L1 443 616 -732 660 218 65 0 chr1 25627024 25627194 -217037159 - MER113 DNA MER1_type? -195 326 146 423 0 0 0 chr1 25627197 25627244 -217037109 + (TG)n Simple_repeat Simple_repeat 2 48 0 1870 128 14 31 chr1 25627244 25627439 -217036914 - AluJb SINE Alu -27 285 95 2240 141 11 16 chr1 25627439 25627815 -217036538 + THE1C LTR MaLR 1 374 -1 1870 128 14 31 chr1 25627815 25627909 -217036444 - AluJb SINE Alu -217 95 1 692 229 18 6 chr1 25627909 25628075 -217036278 - MLT1G1 LTR MaLR -423 172 5 247 379 71 14 chr1 25628796 25628936 -217035417 - L2 LINE L2 -3 3269 3122 183 273 45 34 chr1 25629059 25629147 -217035206 - MIR SINE MIR -6 256 168 309 250 190 0 chr1 25629258 25629358 -217034995 - MIR SINE MIR -123 139 21 609 262 23 35 chr1 25630151 25630323 -217034030 - MIR SINE MIR -13 249 80 881 142 0 8 chr1 25630416 25630550 -217033803 - FLAM_A SINE Alu 0 133 1 228 35 0 0 chr1 25630636 25630665 -217033688 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1875 109 74 0 chr1 25630665 25630922 -217033431 - AluSx SINE Alu -36 276 1 908 178 47 138 chr1 25631174 25631450 -217032903 + MIR SINE MIR 2 252 -10 466 238 114 0 chr1 25631478 25631583 -217032770 + MIR SINE MIR 24 140 -122 1200 194 28 35 chr1 25631585 25631874 -217032479 - AluJo SINE Alu -11 291 5 2399 73 10 13 chr1 25683587 25683887 -216980466 + AluSx SINE Alu 1 299 -13 242 220 150 10 chr1 25684088 25684188 -216980165 + L1ME4a LINE L1 6004 6117 -4 2082 124 3 3 chr1 25684203 25684494 -216979859 + AluSx SINE Alu 5 295 -17 211 294 0 0 chr1 25684504 25684555 -216979798 - MIR SINE MIR -77 131 81 483 267 38 35 chr1 25684649 25684890 -216979463 - MIR SINE MIR -18 244 6 629 155 10 0 chr1 25685240 25685343 -216979010 + AluJb SINE Alu 9 112 -200 313 177 56 5 chr1 25685446 25685609 -216978744 + L1MB8 LINE L1 5884 6130 -48 1063 229 175 23 chr1 25685719 25686200 -216978153 + L1MD3 LINE L1 7429 7982 -13 192 40 0 0 chr1 25686373 25686398 -216977955 + (T)n Simple_repeat Simple_repeat 1 25 0 428 357 0 27 chr1 25686452 25686637 -216977716 + CT-rich Low_complexity Low_complexity 1 180 0 206 262 24 24 chr1 25686614 25686698 -216977655 + (TCTCTG)n Simple_repeat Simple_repeat 3 86 0 * 323 286 23 15 chr1 25686747 25686880 -216977473 + CT-rich Low_complexity Low_complexity 1 134 0 2136 133 3 3 chr1 25687144 25687438 -216976915 - AluJb SINE Alu -13 299 6 2605 65 0 3 chr1 25687504 25687810 -216976543 - AluSc SINE Alu 0 309 5 2038 147 59 7 chr1 25688114 25688300 -216976053 + L1M4 LINE L1 5378 5553 -631 2461 75 3 10 chr1 25688300 25688608 -216975745 + AluSq SINE Alu 1 306 -7 2038 147 59 7 chr1 25688608 25688828 -216975525 + L1M4 LINE L1 5553 5805 -379 363 211 57 68 chr1 25688836 25688885 -216975468 + AluJb SINE Alu 1 49 -253 3581 134 72 7 chr1 25688885 25689481 -216974872 - MER41B LTR ERV1 0 635 1 363 211 57 68 chr1 25689481 25689590 -216974763 + AluJb SINE Alu 49 143 -159 442 199 76 88 chr1 25689808 25689979 -216974374 - MIR SINE MIR -54 208 40 1568 165 4 8 chr1 25690057 25690311 -216974042 - AluJb SINE Alu -59 253 1 191 267 44 78 chr1 25690370 25690460 -216973893 - L2 LINE L2 0 3313 3227 290 357 115 29 chr1 25690582 25690826 -216973527 - L2 LINE L2 -341 2973 2709 1074 81 15 0 chr1 25691004 25691140 -216973213 + AluSq/x SINE Alu 1 138 -174 2457 75 0 22 chr1 25691140 25691458 -216972895 + AluY SINE Alu 1 311 0 1860 178 0 10 chr1 25691468 25691771 -216972582 + AluJb SINE Alu 1 300 -12 511 180 0 0 chr1 25692187 25692276 -216972077 + AluSp/q SINE Alu 213 301 -12 2091 147 3 3 chr1 25692355 25692667 -216971686 + AluJb SINE Alu 1 312 0 262 241 0 17 chr1 25692667 25692717 -216971636 - MIR SINE MIR -16 246 196 299 120 84 30 chr1 25692728 25692781 -216971572 + Alu SINE Alu 242 260 -42 2183 111 3 3 chr1 25692781 25693078 -216971275 + AluSx SINE Alu 1 297 -15 299 120 84 30 chr1 25693078 25693110 -216971243 + Alu SINE Alu 260 289 -13 2166 122 0 27 chr1 25693110 25693446 -216970907 - pTR5 LTR ERV1 -2046 392 66 280 258 31 21 chr1 25693446 25693543 -216970810 - LTR30 LTR ERV1 -80 642 545 989 97 131 11 chr1 25693544 25693719 -216970634 - pTR5 LTR ERV1 -413 2025 1830 839 198 0 19 chr1 25693884 25694041 -216970312 + AluJb SINE Alu 146 299 -13 2157 109 7 7 chr1 25694053 25694347 -216970006 + AluSq SINE Alu 1 294 -19 2247 100 3 0 chr1 25694410 25694701 -216969652 + AluSp SINE Alu 1 292 -21 2216 105 0 3 chr1 25694988 25695292 -216969061 - AluSg SINE Alu -7 303 1 378 220 247 40 chr1 25695775 25695911 -216968442 + MIR SINE MIR 21 192 -70 2377 113 0 0 chr1 25695911 25696221 -216968132 + AluSx SINE Alu 1 310 -2 378 220 247 40 chr1 25696221 25696234 -216968119 + MIR SINE MIR 192 201 -61 251 205 205 110 chr1 25696347 25696474 -216967879 - MIR SINE MIR 0 262 124 608 192 75 34 chr1 25696475 25696621 -216967732 - MIR SINE MIR -103 159 8 2505 74 0 3 chr1 25696864 25697163 -216967190 - AluSp SINE Alu -15 298 1 1653 257 58 19 chr1 25697163 25697626 -216966727 - L2 LINE L2 -7 3306 2826 2332 92 3 0 chr1 25698133 25698426 -216965927 - AluSx SINE Alu -18 294 1 298 300 179 14 chr1 25699330 25699470 -216964883 + MER5A DNA MER1_type 18 180 -9 238 241 35 0 chr1 25699597 25699655 -216964698 + L2 LINE L2 3246 3305 -8 2598 34 10 0 chr1 25699659 25699955 -216964398 + AluY SINE Alu 2 300 -11 198 0 0 0 chr1 25699955 25699977 -216964376 + (TA)n Simple_repeat Simple_repeat 2 23 0 1501 151 10 62 chr1 25700083 25700234 -216964119 - AluJo SINE Alu -36 276 146 1696 146 73 7 chr1 25700234 25700508 -216963845 - AluJb SINE Alu -19 293 2 1501 151 10 62 chr1 25700508 25700647 -216963706 - AluJo SINE Alu -166 146 1 1967 144 26 7 chr1 25701076 25701382 -216962971 - AluSx SINE Alu 0 312 1 1924 121 39 16 chr1 25701523 25701828 -216962525 + AluSx SINE Alu 1 312 0 330 330 17 9 chr1 25701889 25702004 -216962349 - MIR SINE MIR -63 145 30 1982 111 57 0 chr1 25702373 25702653 -216961700 - AluSx SINE Alu -16 296 1 272 265 20 20 chr1 25702691 25702789 -216961564 - L1M4 LINE L1 -2098 4048 3951 2485 71 0 10 chr1 25702852 25703160 -216961193 - AluSc SINE Alu -4 305 1 913 257 46 7 chr1 25703165 25703468 -216960885 - L1MEc LINE L1 -4628 1768 1454 2477 73 0 16 chr1 25703469 25703782 -216960571 - AluY SINE Alu -3 308 1 632 76 0 0 chr1 25703782 25703861 -216960492 - Alu SINE Alu -11 299 221 1093 119 0 6 chr1 25703863 25704023 -216960330 + AluSg/x SINE Alu 136 294 -18 1085 155 31 10 chr1 25704023 25704217 -216960136 + MER1B DNA MER1_type 142 339 0 240 227 106 61 chr1 25704557 25704689 -216959664 + MLT1K LTR MaLR 279 416 -172 975 165 76 76 chr1 25704711 25704948 -216959405 + AluJb SINE Alu 1 237 -75 1593 255 186 54 chr1 25705153 25705936 -216958417 - L2 LINE L2 -194 3078 2102 1630 175 17 24 chr1 25705936 25706233 -216958120 + AluJo SINE Alu 1 295 -17 1593 255 186 54 chr1 25706233 25706665 -216957688 - L2 LINE L2 -1170 2102 1728 2225 120 23 0 chr1 25707089 25707389 -216956964 + AluSx SINE Alu 1 307 -5 350 326 48 20 chr1 25707693 25707840 -216956513 + L2 LINE L2 3163 3313 0 1637 134 43 0 chr1 25707966 25708220 -216956133 - AluSx SINE Alu -47 265 1 995 146 0 0 chr1 25708223 25708374 -216955979 - FRAM SINE Alu -18 158 8 722 251 99 0 chr1 25708374 25708565 -216955788 - MIR SINE MIR -38 224 15 2261 97 0 0 chr1 25708696 25708995 -216955358 + AluSg SINE Alu 1 299 -11 2236 109 0 0 chr1 25709003 25709307 -216955046 + AluSp SINE Alu 1 304 -9 1171 103 6 0 chr1 25709307 25709472 -216954881 + AluSq SINE Alu 134 299 -14 2088 140 0 0 chr1 25709560 25709868 -216954485 + AluJo SINE Alu 3 310 -2 212 299 65 65 chr1 25709885 25710039 -216954314 + L2 LINE L2 2332 2485 -829 31 0 0 0 chr1 25710798 25710829 -216953524 + AT_rich Low_complexity Low_complexity 1 31 0 874 169 36 46 chr1 25712014 25712209 -216952144 + AluJb SINE Alu 102 294 -18 548 257 95 11 chr1 25712566 25712745 -216951608 + MIR SINE MIR 52 245 -17 761 164 132 20 chr1 25712919 25713071 -216951282 - AluJb SINE Alu -4 308 140 1803 151 0 3 chr1 25713221 25713534 -216950819 - AluSx SINE Alu 0 312 1 340 75 0 38 chr1 25713534 25713587 -216950766 + MER4A LTR ERV1 308 358 -306 2096 98 19 41 chr1 25713623 25713940 -216950413 + MER4A LTR ERV1 355 664 0 347 187 133 0 chr1 25714037 25714112 -216950241 - LTR24 LTR ERV1 0 467 383 * 2019 139 18 54 chr1 25714089 25714242 -216950111 - LTR23 LTR ERV1 -62 375 218 1993 125 24 0 chr1 25714242 25714538 -216949815 + AluSx SINE Alu 1 303 -9 2023 100 17 3 chr1 25714542 25714831 -216949522 + AluSg SINE Alu 1 293 -17 2019 139 18 54 chr1 25714831 25715059 -216949294 - LTR23 LTR ERV1 -222 215 3 1300 94 0 0 chr1 25715475 25715645 -216948708 + AluSg/x SINE Alu 133 302 -10 258 237 34 0 chr1 25717094 25717153 -216947200 - MIR3 SINE MIR -10 198 138 2257 92 0 3 chr1 25717429 25717734 -216946619 - AluSx SINE Alu -8 304 1 842 121 23 0 chr1 25717735 25717867 -216946486 - AluJb SINE Alu -177 135 1 702 296 96 70 chr1 25718058 25718219 -216946134 - MLT1K LTR MaLR -129 459 304 2002 113 0 10 chr1 25718219 25718520 -216945833 - AluSx SINE Alu -14 298 1 702 296 96 70 chr1 25718520 25718804 -216945549 - MLT1K LTR MaLR -284 304 2 429 314 0 8 chr1 25719934 25720050 -216944303 - MIR SINE MIR -5 257 143 543 271 39 13 chr1 25720050 25720205 -216944148 + MER91A DNA MER1_type 1 159 -37 210 305 163 21 chr1 25720179 25720320 -216944033 - MIR SINE MIR -93 169 9 * 323 296 183 14 chr1 25720394 25720536 -216943817 + MIR3 SINE MIR 3 168 -40 248 216 128 88 chr1 25720891 25721016 -216943337 + MIR3 SINE MIR 55 184 -24 339 210 29 19 chr1 25721447 25721552 -216942801 + MIR SINE MIR 94 201 -56 454 250 27 9 chr1 25721597 25721709 -216942644 + L2 LINE L2 3190 3303 -10 1297 82 17 82 chr1 25721709 25721849 -216942504 + AluSx SINE Alu 1 122 -190 2026 86 14 3 chr1 25721849 25722139 -216942214 + AluSg SINE Alu 1 293 -17 1297 82 17 82 chr1 25722139 25722230 -216942123 + AluSx SINE Alu 122 217 -95 1422 158 27 27 chr1 25722432 25722691 -216941662 + AluJo SINE Alu 1 259 -53 1752 175 3 0 chr1 25722822 25723119 -216941234 + AluSx SINE Alu 1 298 -14 908 78 0 0 chr1 25723431 25723547 -216940806 - AluSg/x SINE Alu -64 248 133 2026 101 10 3 chr1 25723553 25723841 -216940512 - AluSg SINE Alu -20 290 1 1974 141 3 0 chr1 25723843 25724148 -216940205 - AluSx SINE Alu -5 307 2 325 305 116 42 chr1 25724154 25724560 -216939793 - MLT1L LTR MaLR -70 545 110 1116 310 56 5 chr1 25725000 25725390 -216938963 + L2 LINE L2 1912 2321 -993 1220 163 4 9 chr1 25725390 25725617 -216938736 - AluJb SINE Alu 0 312 87 761 248 87 0 chr1 25725617 25725823 -216938530 + L2 LINE L2 2309 2532 -782 295 291 60 0 chr1 25725825 25725942 -216938411 - L1M4 LINE L1 -917 5229 5106 1963 141 0 3 chr1 25725955 25726254 -216938099 + AluSx SINE Alu 1 298 -14 243 0 0 0 chr1 25726254 25726281 -216938072 + (TA)n Simple_repeat Simple_repeat 1 27 0 1077 262 78 42 chr1 25726340 25726841 -216937512 + L2 LINE L2 2556 3068 -245 1830 138 7 3 chr1 25726906 25727197 -216937156 + AluSc SINE Alu 1 292 -17 234 88 0 0 chr1 25727207 25727241 -216937112 - L1M1 LINE L1 -4701 2864 2831 2198 100 0 0 chr1 25727246 25727545 -216936808 + AluY SINE Alu 1 299 -12 274 134 23 0 chr1 25727690 25727744 -216936609 - Alu SINE Alu -250 53 11 4974 145 29 36 chr1 25727764 25728224 -216936129 - L1MB7 LINE L1 -5 6179 5717 2077 104 0 45 chr1 25728224 25728533 -216935820 + AluSx SINE Alu 1 295 -17 4974 145 29 36 chr1 25728533 25729101 -216935252 - L1MB7 LINE L1 -467 5717 5159 247 54 0 0 chr1 25729103 25729167 -216935186 - Alu SINE Alu 0 331 268 749 154 69 8 chr1 25729269 25729399 -216934954 + FRAM SINE Alu 22 159 -17 2170 108 0 0 chr1 25729402 25729698 -216934655 + AluSx SINE Alu 1 296 -16 1281 224 33 15 chr1 25729698 25730028 -216934325 - L1ME1 LINE L1 -139 6027 5692 2156 116 0 0 chr1 25730044 25730338 -216934015 - AluSx SINE Alu -16 296 3 394 297 39 28 chr1 25730519 25730701 -216933652 - MIR SINE MIR -65 197 14 2109 97 3 3 chr1 25730938 25731237 -216933116 - AluSg SINE Alu -11 299 1 247 246 58 0 chr1 25731295 25731364 -216932989 - MIR SINE MIR -83 179 107 317 281 79 50 chr1 25731364 25731603 -216932750 - MLT1L LTR MaLR -4 605 363 336 240 160 10 chr1 25731690 25731790 -216932563 - MLT1L LTR MaLR -375 240 126 874 206 0 0 chr1 25731848 25732018 -216932335 + FRAM SINE Alu 1 170 -6 2136 92 10 7 chr1 25732019 25732323 -216932030 + AluSx SINE Alu 5 309 -3 2192 68 3 20 chr1 25732326 25732622 -216931731 + AluY SINE Alu 6 296 -15 900 303 66 5 chr1 25732623 25733003 -216931350 + L1ME3A LINE L1 5549 5951 -219 1528 151 3 80 chr1 25733213 25733524 -216930829 + AluJo SINE Alu 12 298 -14 856 169 124 10 chr1 25733608 25733809 -216930544 - AluJo SINE Alu -18 294 71 1127 161 0 27 chr1 25733973 25734197 -216930156 - AluSg SINE Alu -92 218 1 1739 129 3 31 chr1 25734328 25734615 -216929738 + AluJo SINE Alu 1 279 -33 216 67 0 0 chr1 25734617 25734647 -216929706 + (CA)n Simple_repeat Simple_repeat 1 30 0 232 174 145 29 chr1 25734651 25734696 -216929657 + MER103 DNA DNA 19 76 -90 923 202 56 0 chr1 25734696 25734894 -216929459 + MER3 DNA MER1_type 1 209 0 232 174 145 29 chr1 25734894 25734917 -216929436 + MER103 DNA DNA 76 95 -71 2050 96 14 3 chr1 25734959 25735250 -216929103 - AluSx SINE Alu -18 294 1 618 177 41 34 chr1 25735304 25735451 -216928902 - MIR3 SINE MIR -46 162 15 322 299 160 0 chr1 25735493 25735637 -216928716 - MIR SINE MIR -7 255 89 1832 136 7 19 chr1 25736057 25736365 -216927988 + AluJb SINE Alu 1 304 -8 239 119 0 0 chr1 25736490 25736532 -216927821 + AluJo SINE Alu 260 301 -2 892 151 0 76 chr1 25736939 25737111 -216927242 - AluJo SINE Alu -151 161 3 222 37 0 0 chr1 25737119 25737146 -216927207 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 1611 160 32 7 chr1 25737165 25737447 -216926906 - AluSq SINE Alu -20 293 5 1573 127 8 4 chr1 25737867 25738112 -216926241 - AluJb SINE Alu -25 287 42 534 211 0 8 chr1 25738117 25738240 -216926113 - L1MC4 LINE L1 -1 8041 7920 260 304 9 0 chr1 25738246 25738361 -216925992 + (TA)n Simple_repeat Simple_repeat 1 116 0 1913 115 3 33 chr1 25738362 25738666 -216925687 - AluSx SINE Alu -17 295 1 2218 106 3 0 chr1 25738673 25738985 -216925368 - AluSq SINE Alu 0 313 1 743 185 0 0 chr1 25739007 25739126 -216925227 - FLAM_A SINE Alu -14 119 1 2333 97 0 0 chr1 25739166 25739477 -216924876 - AluSx SINE Alu -1 311 1 2197 95 3 0 chr1 25739490 25739784 -216924569 - AluSx SINE Alu -17 295 1 774 279 48 17 chr1 25740094 25740384 -216923969 + L1MC4 LINE L1 7251 7549 -493 957 146 6 12 chr1 25740529 25740693 -216923660 - AluSx SINE Alu -143 169 7 908 113 0 0 chr1 25740827 25740951 -216923402 + FLAM_C SINE Alu 1 124 -19 1243 157 36 39 chr1 25741168 25741474 -216922879 - AluJb SINE Alu -2 310 6 207 238 191 19 chr1 25742246 25742351 -216922002 + L2 LINE L2 94 216 -3098 555 182 0 0 chr1 25743323 25743411 -216920942 + FRAM/FAM SINE Alu 1 87 -89 952 292 79 23 chr1 25743538 25743932 -216920421 + L2 LINE L2 2377 2792 -522 1102 230 28 50 chr1 25743932 25744249 -216920104 + MLT1A1 LTR MaLR 1 310 -55 2217 111 0 9 chr1 25744271 25744587 -216919766 - AluSp SINE Alu 0 313 1 978 168 0 5 chr1 25744587 25744777 -216919576 - L1M4 LINE L1 -978 5168 4980 1693 179 31 70 chr1 25744811 25745131 -216919222 - L1M4 LINE L1 -1153 4993 4691 2018 123 27 0 chr1 25745131 25745432 -216918921 + AluSq SINE Alu 1 309 -4 1693 179 31 70 chr1 25745432 25745524 -216918829 - L1M4 LINE L1 -1455 4691 4597 483 249 216 22 chr1 25745773 25746042 -216918311 + L2 LINE L2 2181 2501 -813 213 225 100 0 chr1 25746211 25746291 -216918062 + L2 LINE L2 3021 3108 -205 1539 181 10 16 chr1 25746291 25746595 -216917758 - AluJb SINE Alu -10 302 1 503 144 0 144 chr1 25746603 25746735 -216917618 - AluJb SINE Alu 0 312 200 333 253 152 0 chr1 25746920 25747019 -216917334 + L3 LINE CR1 1406 1519 -58 364 235 229 20 chr1 25747517 25747670 -216916683 - MIR SINE MIR -6 256 72 253 241 35 58 chr1 25747846 25747933 -216916420 - MIR SINE MIR -70 192 108 959 117 14 7 chr1 25747938 25748083 -216916270 + AluSq/x SINE Alu 1 146 -167 458 256 30 15 chr1 25748218 25748351 -216916002 - LTR37B LTR ERV1 -333 135 1 2057 132 0 0 chr1 25748446 25748749 -216915604 - AluSx SINE Alu -9 303 1 261 216 0 0 chr1 25748812 25748863 -216915490 - MIR SINE MIR -32 230 180 1526 136 0 24 chr1 25749012 25749263 -216915090 + AluSx SINE Alu 2 246 -66 1334 158 15 38 chr1 25749423 25749689 -216914664 + AluJo SINE Alu 2 261 -51 440 286 219 23 chr1 25749850 25749899 -216914454 + L2 LINE L2 1841 1879 -1435 2670 19 0 0 chr1 25749899 25750206 -216914147 + AluYa5 SINE Alu 1 307 -4 440 286 219 23 chr1 25750206 25750544 -216913809 + L2 LINE L2 1879 2304 -1010 899 158 19 0 chr1 25750550 25750708 -216913645 - AluSc SINE Alu -10 299 139 2342 54 24 0 chr1 25750723 25751019 -216913334 - AluY SINE Alu -8 303 1 1645 139 3 58 chr1 25751410 25751720 -216912633 + AluSq SINE Alu 1 293 -20 293 295 0 0 chr1 25751728 25751806 -216912547 + MIR SINE MIR 180 257 -5 395 211 56 0 chr1 25751820 25751910 -216912443 - L2 LINE L2 -8 3264 3170 1222 176 64 78 chr1 25752023 25752318 -216912035 + AluJo SINE Alu 1 291 -11 1883 131 3 7 chr1 25752326 25752624 -216911729 + AluSx SINE Alu 3 299 -13 487 248 34 17 chr1 25752747 25752864 -216911489 - MIR SINE MIR -112 150 32 382 291 8 8 chr1 25752935 25753062 -216911291 - MIR SINE MIR -79 183 57 216 195 24 0 chr1 25753563 25753604 -216910749 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1036 154 0 0 chr1 25753673 25753835 -216910518 - AluSg/x SINE Alu -17 293 132 1972 148 0 7 chr1 25753835 25754145 -216910208 - AluSx SINE Alu -4 308 1 1359 96 38 96 chr1 25754275 25754514 -216909839 + MER30 DNA MER1_type 6 230 0 401 232 384 0 chr1 25754517 25754681 -216909672 + MIR SINE MIR 12 238 -24 275 259 65 9 chr1 25755291 25755399 -216908954 - L1ME4a LINE L1 0 6121 6008 864 151 60 0 chr1 25755424 25755577 -216908776 - AluSg/x SINE Alu -16 296 131 1930 122 3 7 chr1 25755577 25755873 -216908480 - AluSx SINE Alu -17 295 1 864 151 60 0 chr1 25755873 25755885 -216908468 - AluSg/x SINE Alu -181 131 121 189 0 0 0 chr1 25755914 25755935 -216908418 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr1 25755962 25755984 -216908369 + AT_rich Low_complexity Low_complexity 1 22 0 1019 159 26 46 chr1 25756781 25756976 -216907377 + AluJb SINE Alu 1 191 -121 276 294 129 35 chr1 25758279 25758449 -216905904 - MIR SINE MIR -12 250 65 933 187 0 0 chr1 25759620 25759770 -216904583 - AluJb SINE Alu -26 286 137 526 240 129 12 chr1 25759885 25760056 -216904297 + MIR SINE MIR 48 238 -24 375 234 90 28 chr1 25760370 25760515 -216903838 - MIR3 SINE MIR -37 171 18 1079 89 7 0 chr1 25760750 25760885 -216903468 + AluSq/x SINE Alu 1 136 -176 2383 78 14 0 chr1 25760885 25761180 -216903173 + AluY SINE Alu 1 299 -12 198 71 0 0 chr1 25763580 25763608 -216900745 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 1852 151 45 3 chr1 25764106 25764397 -216899956 - AluSx SINE Alu -9 303 1 258 95 0 0 chr1 25764463 25764505 -216899848 + (TTTTTA)n Simple_repeat Simple_repeat 2 43 0 467 189 11 0 chr1 25764950 25765040 -216899313 - L2 LINE L2 -2 3311 3221 201 191 0 132 chr1 25765059 25765127 -216899226 + MIR3 SINE MIR 118 176 -32 498 229 46 15 chr1 25765455 25765586 -216898767 + MIR SINE MIR 26 160 -102 2165 136 0 0 chr1 25765589 25765891 -216898462 + AluSx SINE Alu 1 302 -10 200 184 0 0 chr1 25766014 25766052 -216898301 + MIR SINE MIR 114 151 -111 457 133 27 0 chr1 25766054 25766129 -216898224 + AluS SINE Alu 3 79 -233 1125 154 6 6 chr1 25766343 25766518 -216897835 + AluJb SINE Alu 130 304 -8 775 131 0 44 chr1 25766521 25766658 -216897695 + FLAM_C SINE Alu 1 131 -2 599 208 98 6 chr1 25766793 25766966 -216897387 + MIR SINE MIR 71 259 -3 2130 104 4 4 chr1 25767158 25767438 -216896915 + AluSq SINE Alu 21 300 -13 2093 106 3 7 chr1 25767449 25767756 -216896597 + AluSq SINE Alu 1 306 0 203 321 0 0 chr1 25767879 25767932 -216896421 - MIR SINE MIR -118 90 38 180 250 0 0 chr1 25768003 25768051 -216896302 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr1 25768051 25768077 -216896276 + (TC)n Simple_repeat Simple_repeat 2 27 0 470 116 29 0 chr1 25768360 25768429 -216895924 - MLT1B LTR MaLR -296 94 24 205 326 22 0 chr1 25768524 25768613 -216895740 + MIR SINE MIR 172 262 0 2240 75 11 4 chr1 25768763 25769043 -216895310 + AluSc SINE Alu 1 282 -27 2248 134 0 0 chr1 25769062 25769369 -216894984 + AluSx SINE Alu 1 307 -5 2306 99 0 7 chr1 25769372 25769674 -216894679 + AluSx SINE Alu 1 300 -12 1643 170 7 7 chr1 25770396 25770678 -216893675 - AluJb SINE Alu -30 282 1 2389 87 6 3 chr1 25770743 25771055 -216893298 - AluSp SINE Alu 0 313 1 2203 106 0 20 chr1 25771200 25771502 -216892851 - AluSx SINE Alu -16 296 1 286 241 286 0 chr1 25771604 25771737 -216892616 - MER112 DNA MER1_type -2 258 88 252 220 275 28 chr1 25771823 25771932 -216892421 - MER5B DNA MER1_type -17 161 26 2345 68 0 0 chr1 25772259 25772537 -216891816 - AluY SINE Alu -20 291 14 2335 94 0 7 chr1 25772539 25772837 -216891516 - AluSq SINE Alu -17 296 1 1900 130 7 40 chr1 25776125 25776426 -216887927 + AluSg SINE Alu 1 291 -19 1179 207 23 23 chr1 25778652 25778908 -216885445 - AluJo SINE Alu -14 298 43 409 284 120 16 chr1 25779157 25779340 -216885013 - MIR SINE MIR -12 250 49 233 296 0 0 chr1 25779687 25779768 -216884585 + GA-rich Low_complexity Low_complexity 2 82 0 200 264 0 0 chr1 25779768 25779821 -216884532 + (CTG)n Simple_repeat Simple_repeat 3 55 0 452 194 51 0 chr1 25779983 25780081 -216884272 - L1MB8 LINE L1 -17 6161 6059 1394 50 72 0 chr1 25780201 25780381 -216883972 - L1PA4 LINE L1 -3 6152 5960 197 167 0 17 chr1 25780888 25780948 -216883405 + T-rich Low_complexity Low_complexity 2 60 0 202 29 57 0 chr1 25781233 25781268 -216883085 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 219 151 19 38 chr1 25781433 25781486 -216882867 + T-rich Low_complexity Low_complexity 5 56 0 225 94 0 0 chr1 25781875 25781907 -216882446 + (TG)n Simple_repeat Simple_repeat 1 32 0 1616 196 171 17 chr1 25782171 25782580 -216881773 + MLT1F LTR MaLR 63 534 -8 2228 110 0 7 chr1 25783131 25783439 -216880914 - AluSx SINE Alu -6 306 1 1824 112 8 0 chr1 25833599 25833850 -216830503 + AluSx SINE Alu 59 311 -1 307 306 74 19 chr1 25834125 25834233 -216830120 + MIR SINE MIR 37 150 -58 571 188 107 0 chr1 25834315 25834427 -216829926 + FLAM_C SINE Alu 2 125 -8 1197 133 12 0 chr1 25834447 25834613 -216829740 + AluSx SINE Alu 1 168 -144 1056 177 69 0 chr1 25834620 25834652 -216829701 + AluJo SINE Alu 85 113 -199 234 0 0 0 chr1 25834652 25834678 -216829675 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1056 177 69 0 chr1 25834678 25834848 -216829505 + AluJo SINE Alu 113 301 -11 21 0 0 0 chr1 25834866 25834887 -216829466 + AT_rich Low_complexity Low_complexity 1 21 0 425 282 15 23 chr1 25835211 25835342 -216829011 - MIR SINE MIR -100 162 33 533 286 35 12 chr1 25835486 25835657 -216828696 + MIR SINE MIR 21 195 -67 394 310 152 27 chr1 25835696 25836103 -216828250 - L2 LINE L2 0 3313 2856 361 263 79 2 chr1 25836675 25836789 -216827564 + MIR3 SINE MIR 43 159 -49 1837 109 64 8 chr1 25837522 25837815 -216826538 + AluSg SINE Alu 1 308 0 412 280 118 14 chr1 25837868 25838079 -216826274 + L1MC4 LINE L1 7752 7984 -58 2116 149 0 0 chr1 25838081 25838389 -216825964 - AluSx SINE Alu -4 308 1 947 104 80 0 chr1 25838389 25838514 -216825839 - AluSq/x SINE Alu -178 135 1 2260 127 3 0 chr1 25838953 25839261 -216825092 - AluSx SINE Alu -3 309 1 499 317 6 6 chr1 25839496 25839663 -216824690 + MIR3 SINE MIR 17 183 -25 1016 221 110 18 chr1 25840013 25840403 -216823950 - LTR33A LTR ERVL -8 515 90 609 264 106 14 chr1 25840963 25841171 -216823182 - MIR SINE MIR -22 240 14 226 269 226 11 chr1 25841588 25841681 -216822672 - MIR SINE MIR -51 211 99 540 225 123 31 chr1 25841766 25841932 -216822421 - MIR SINE MIR -27 181 24 416 250 60 32 chr1 25841977 25842193 -216822160 - HsTC2 DNA Tc2 0 1898 1677 309 162 29 29 chr1 25842194 25842262 -216822091 - L1MCa LINE L1 -4361 2065 1998 * 320 356 9 9 chr1 25842232 25842347 -216822006 + L1MC4 LINE L1 6614 6728 -1314 2113 136 10 0 chr1 25842433 25842734 -216821619 + AluSx SINE Alu 3 306 -6 283 212 182 0 chr1 25842932 25842998 -216821355 - MER63 DNA MER1_type -5 1055 978 1847 132 44 30 chr1 25843024 25843320 -216821033 + AluJo SINE Alu 1 300 -12 414 151 108 32 chr1 25843337 25843430 -216820923 - MER63 DNA MER1_type -336 726 1 1026 223 48 4 chr1 25843526 25843755 -216820598 - HsTC2 DNA Tc2 -362 1536 1298 305 235 0 35 chr1 25843806 25843891 -216820462 - HsTC2 DNA Tc2 -1816 82 1 2386 105 3 0 chr1 25844341 25844645 -216819708 - AluSx SINE Alu -7 305 1 251 268 197 0 chr1 25844654 25844725 -216819628 + L2 LINE L2 3186 3270 -2 375 105 0 0 chr1 25844976 25845033 -216819320 + (CGGGG)n Simple_repeat Simple_repeat 2 58 0 356 298 13 46 chr1 25845305 25845456 -216818897 + MIR SINE MIR 34 179 -83 572 165 18 37 chr1 25845526 25845635 -216818718 + MER5A DNA MER1_type 2 108 -81 2232 116 3 3 chr1 25845637 25845947 -216818406 - AluSx SINE Alu -2 310 1 1673 154 57 6 chr1 25845966 25846284 -216818069 - L1MB7 LINE L1 -24 6160 5827 22 70 0 0 chr1 25846327 25846370 -216817983 + AT_rich Low_complexity Low_complexity 1 43 0 2393 154 8 3 chr1 25846381 25846771 -216817582 - L1MC1 LINE L1 -17 6316 5925 1645 203 54 44 chr1 25846773 25847069 -216817284 - MSTD LTR MaLR -2 394 92 1962 176 3 0 chr1 25847069 25847375 -216816978 - AluJo SINE Alu -5 307 1 1645 203 54 44 chr1 25847375 25847468 -216816885 - MSTD LTR MaLR -304 92 1 7589 214 55 32 chr1 25847468 25849162 -216815191 - MSTD-int LTR MaLR 0 1735 2 268 83 0 0 chr1 25849164 25849200 -216815153 - MSTD LTR MaLR -17 379 344 222 156 62 0 chr1 25849200 25849264 -216815089 + (TA)n Simple_repeat Simple_repeat 1 68 0 1212 227 62 10 chr1 25849277 25849585 -216814768 - MSTD LTR MaLR -72 324 1 9339 198 26 32 chr1 25849585 25852813 -216811540 - L1MC1 LINE L1 -404 5929 2722 603 136 3 1 chr1 25852816 25852934 -216811419 - L1MB7 LINE L1 -325 5826 5707 2980 173 45 64 chr1 25852942 25853929 -216810424 - L1MB5 LINE L1 -53 6120 5116 2148 149 0 0 chr1 25853929 25854237 -216810116 - AluJb SINE Alu -4 308 1 1465 158 0 29 chr1 25854240 25854481 -216809872 - AluJo SINE Alu 0 312 79 1897 122 59 24 chr1 25854486 25854774 -216809579 - AluSq SINE Alu -13 300 3 2980 173 45 64 chr1 25854774 25854845 -216809508 - L1MB5 LINE L1 -973 5200 5129 1995 183 59 7 chr1 25855537 25855959 -216808394 - MLT1C LTR MaLR 0 467 24 498 136 0 0 chr1 25856150 25856231 -216808122 + (CA)n Simple_repeat Simple_repeat 2 82 0 2191 115 3 6 chr1 25856296 25856610 -216807743 + AluSq SINE Alu 1 313 0 546 279 164 4 chr1 25856626 25856852 -216807501 + LTR16A1 LTR ERVL 196 457 0 200 289 0 0 chr1 25857022 25857074 -216807279 + L2 LINE L2 3019 3070 -243 1438 314 80 34 chr1 25857192 25857393 -216806960 - ERVL LTR ERVL -2071 3693 3503 3433 77 11 17 chr1 25857393 25857906 -216806447 - L1PA10 LINE L1 0 6168 5707 1438 314 80 34 chr1 25857906 25858353 -216806000 - ERVL LTR ERVL -2261 3503 3015 931 230 167 34 chr1 25858366 25858744 -216805609 - MLT1D LTR MaLR -47 458 31 438 306 14 57 chr1 25858777 25858937 -216805416 - ERVL LTR ERVL -2039 2957 2805 2085 110 0 0 chr1 25858937 25859238 -216805115 - AluSx SINE Alu 0 301 1 438 306 14 57 chr1 25859238 25859285 -216805068 - ERVL LTR ERVL -2191 2805 2758 868 249 109 28 chr1 25859423 25859780 -216804573 + LTR16A1 LTR ERVL 70 455 -2 2211 100 68 31 chr1 25859791 25860142 -216804211 - THE1B LTR MaLR 0 364 1 8379 91 30 32 chr1 25860142 25861466 -216802887 - THE1B-int LTR MaLR 0 1580 260 475 111 0 0 chr1 25861466 25861538 -216802815 + THE1B LTR MaLR 224 295 -69 528 328 54 4 chr1 25861540 25861781 -216802572 - ERVL LTR ERVL -2327 2669 2417 779 294 74 11 chr1 25861782 25862051 -216802302 + L2 LINE L2 3027 3312 -1 225 0 0 0 chr1 25862427 25862452 -216801901 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2150 110 0 0 chr1 25863242 25863544 -216800809 - AluSx SINE Alu 0 302 1 382 217 130 17 chr1 25863544 25863659 -216800694 + MIR SINE MIR 114 241 -21 192 40 0 0 chr1 25863662 25863687 -216800666 + (TTA)n Simple_repeat Simple_repeat 2 26 0 243 296 49 12 chr1 25863696 25863777 -216800576 - L2 LINE L2 -189 3083 3000 270 282 35 53 chr1 25863967 25864194 -216800159 + L1ME4a LINE L1 5895 6117 -4 1488 160 94 14 chr1 25864205 25864480 -216799873 + AluJo SINE Alu 3 299 -13 250 259 56 83 chr1 25867606 25867714 -216796639 + MIR3 SINE MIR 50 154 -54 261 75 0 0 chr1 25869661 25869701 -216794652 + (T)n Simple_repeat Simple_repeat 1 40 0 369 263 111 47 chr1 25872210 25872381 -216791972 - MIR3 SINE MIR -2 206 25 659 271 152 0 chr1 25872408 25872618 -216791735 + MIR SINE MIR 2 243 -19 560 235 39 20 chr1 25873880 25874033 -216790320 - MIR SINE MIR -85 177 22 201 261 0 0 chr1 25875173 25875219 -216789134 - L2 LINE L2 -4 3309 3264 1560 153 10 67 chr1 25877013 25877326 -216787027 + AluJo SINE Alu 1 295 -17 234 231 77 0 chr1 25878116 25878168 -216786185 + MIR SINE MIR 119 174 -88 236 346 10 50 chr1 25878536 25878637 -216785716 - MIR SINE MIR -61 147 51 2345 78 3 13 chr1 25878652 25878958 -216785395 + AluSx SINE Alu 1 303 -9 183 394 121 38 chr1 25879203 25879518 -216784835 + L3 LINE CR1 185 525 -1052 328 294 144 0 chr1 25879521 25879681 -216784672 - MER102a DNA MER1_type -2 328 146 294 365 79 0 chr1 25879840 25879966 -216784387 + L3 LINE CR1 878 1013 -564 184 319 43 60 chr1 25880026 25880142 -216784211 + MIR SINE MIR 20 133 -129 204 370 58 7 chr1 25880245 25880383 -216783970 - MIR SINE MIR -98 164 20 281 348 84 7 chr1 25881245 25881400 -216782953 - MIR SINE MIR -15 247 81 262 286 36 12 chr1 25881696 25881780 -216782573 + MIR SINE MIR 96 181 -81 310 297 62 16 chr1 25882008 25882136 -216782217 + MIR SINE MIR 62 195 -67 322 316 168 16 chr1 25882537 25882727 -216781626 - MIR SINE MIR 0 262 44 389 260 136 12 chr1 25883504 25883673 -216780680 + L2 LINE L2 2990 3179 -134 * 744 294 67 68 chr1 25883659 25883790 -216780563 - L2 LINE L2 0 3313 3183 2320 96 0 0 chr1 25883790 25884093 -216780260 + AluSx SINE Alu 1 303 -9 744 294 67 68 chr1 25884093 25884457 -216779896 - L2 LINE L2 -130 3183 2819 211 238 48 0 chr1 25884535 25884598 -216779755 + MER5A DNA MER1_type 120 185 -4 264 317 24 0 chr1 25884929 25885011 -216779342 - MIR SINE MIR -68 194 111 253 242 121 11 chr1 25885212 25885303 -216779050 - MIR SINE MIR -60 148 48 367 227 52 58 chr1 25886164 25886319 -216778034 - MIR3 SINE MIR -65 143 8 * 489 281 52 0 chr1 25886291 25886426 -216777927 - MIR SINE MIR -48 214 73 254 270 45 11 chr1 25886493 25886582 -216777771 - MIR3 SINE MIR -36 172 81 330 91 0 0 chr1 25887214 25887269 -216777084 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 784 286 70 22 chr1 25888329 25888700 -216775653 - L1ME4a LINE L1 -12 6109 5721 336 265 0 0 chr1 25888871 25888969 -216775384 - L1ME4a LINE L1 -392 5729 5632 238 217 167 0 chr1 25890530 25890590 -216773763 + L2 LINE L2 3003 3072 -241 1184 131 16 0 chr1 25890593 25890776 -216773577 - AluJ SINE Alu -6 306 121 257 92 31 46 chr1 25890777 25890842 -216773511 + CT-rich Low_complexity Low_complexity 3 66 0 777 152 48 0 chr1 25890842 25890967 -216773386 - AluJ SINE Alu -169 133 3 1823 186 67 19 chr1 25890968 25891446 -216772907 + Charlie4a DNA MER1_type 2 502 -6 491 322 95 12 chr1 25891459 25891701 -216772652 + L2 LINE L2 3051 3312 -1 791 249 152 38 chr1 25892696 25892733 -216771620 + MER20B DNA MER1_type 213 244 -539 1718 143 53 33 chr1 25892733 25893033 -216771320 + AluJb SINE Alu 1 306 -6 791 249 152 38 chr1 25893033 25893496 -216770857 + MER20B DNA MER1_type 244 770 -13 205 241 0 35 chr1 25893989 25894047 -216770306 - MIR3 SINE MIR -1 207 152 950 249 57 0 chr1 25894066 25894295 -216770058 - MIR SINE MIR -3 259 18 21 57 0 0 chr1 25898366 25898401 -216765952 + GC_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr1 25898562 25898589 -216765764 + GC_rich Low_complexity Low_complexity 1 27 0 23 68 0 0 chr1 25898628 25898672 -216765681 + GC_rich Low_complexity Low_complexity 1 44 0 28 111 0 0 chr1 25898753 25898879 -216765474 + GC_rich Low_complexity Low_complexity 1 126 0 27 0 0 0 chr1 25898922 25898949 -216765404 + GC_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr1 25898955 25898979 -216765374 + GC_rich Low_complexity Low_complexity 1 24 0 416 221 213 8 chr1 25901907 25902034 -216762319 + MIR SINE MIR 90 242 -20 194 184 0 0 chr1 25902639 25902677 -216761676 + MIR SINE MIR 109 146 -62 217 278 258 20 chr1 25903202 25903353 -216761000 - MIR SINE MIR -16 246 60 293 278 19 37 chr1 25903634 25903742 -216760611 - MIR SINE MIR -70 192 87 241 351 126 0 chr1 25904388 25904539 -216759814 - MIR SINE MIR 0 262 93 745 298 19 9 chr1 25904842 25905057 -216759296 - MIR SINE MIR -43 219 3 423 248 62 16 chr1 25905140 25905269 -216759084 - MIR3 SINE MIR -8 200 66 991 193 11 0 chr1 25905849 25906025 -216758328 + MER45A DNA AcHobo 1 178 0 236 243 225 18 chr1 25906174 25906285 -216758068 - MIR SINE MIR -127 135 2 392 289 8 23 chr1 25906832 25906960 -216757393 + MIR3 SINE MIR 78 203 -5 319 301 21 4 chr1 25906973 25907117 -216757236 - MIR3 SINE MIR -58 150 14 1386 199 60 71 chr1 25907260 25907627 -216756726 + MLT1A1 LTR MaLR 3 365 0 216 290 0 28 chr1 25907846 25907953 -216756400 + (CA)n Simple_repeat Simple_repeat 1 104 0 441 297 55 11 chr1 25908637 25908819 -216755534 + L3 LINE CR1 1145 1334 -243 304 218 163 60 chr1 25908988 25909137 -216755216 + MIR SINE MIR 21 182 -26 720 199 0 22 chr1 25909261 25909397 -216754956 + FLAM_A SINE Alu 1 133 0 460 279 25 32 chr1 25910081 25910239 -216754114 - MIR SINE MIR -74 188 32 610 248 60 85 chr1 25910892 25911223 -216753130 - L2 LINE L2 0 3313 2991 561 260 62 0 chr1 25912029 25912206 -216752147 - MIR SINE MIR -3 259 72 247 304 14 0 chr1 25912487 25912556 -216751797 - L3b LINE CR1 -198 1385 1316 966 249 151 37 chr1 25912853 25913084 -216751269 + L2 LINE L2 2804 3007 -306 2304 176 13 71 chr1 25913084 25913618 -216750735 + MLT1D LTR MaLR 1 503 -2 966 249 151 37 chr1 25913618 25913769 -216750584 + L2 LINE L2 3007 3139 -174 672 185 154 6 chr1 25913769 25913931 -216750422 + MER53 DNA DNA 1 186 -3 966 249 151 37 chr1 25913931 25914004 -216750349 + L2 LINE L2 3139 3312 -1 749 239 80 5 chr1 25914099 25914300 -216750053 - MIR SINE MIR -1 261 46 411 98 0 0 chr1 25914693 25914754 -216749599 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 200 239 0 0 chr1 25914764 25914810 -216749543 + MIR SINE MIR 108 153 -109 524 219 92 0 chr1 25914845 25915009 -216749344 - L1ME4a LINE L1 -1 6120 5942 226 316 176 7 chr1 25915249 25915385 -216748968 - L1ME4a LINE L1 -359 5762 5604 224 263 40 53 chr1 25915744 25915820 -216748533 - MIR SINE MIR -79 183 109 181 304 65 0 chr1 25916594 25916686 -216747667 + MIR3 SINE MIR 86 183 -25 508 234 133 6 chr1 25917807 25917965 -216746388 - MIR SINE MIR -48 214 37 233 291 18 73 chr1 25918044 25918154 -216746199 - L2 LINE L2 0 3272 3169 900 223 165 5 chr1 25918745 25918969 -216745384 - MER45C DNA AcHobo 0 953 694 706 202 93 26 chr1 25919009 25919202 -216745151 - MER45C DNA AcHobo -685 268 63 2206 110 0 0 chr1 25919574 25919875 -216744478 + AluSc SINE Alu 1 301 -8 248 235 148 3 chr1 25920115 25920199 -216744154 - MIR SINE MIR -63 145 61 509 224 35 0 chr1 25920409 25920525 -216743828 + MIR SINE MIR 77 196 -66 528 206 9 0 chr1 25920530 25920637 -216743716 + AluJb SINE Alu 195 302 -10 192 250 16 16 chr1 25920637 25920701 -216743652 + MIR SINE MIR 189 252 -10 369 206 20 20 chr1 25921039 25921141 -216743212 - MER103 DNA DNA -61 105 4 524 279 117 11 chr1 25921330 25921509 -216742844 - MIR SINE MIR -43 219 22 183 154 0 0 chr1 25921719 25921733 -216742620 + A-rich Low_complexity Low_complexity 1 14 -25 2362 65 7 0 chr1 25921733 25922042 -216742311 + AluY SINE Alu 1 311 0 183 154 0 0 chr1 25922042 25922066 -216742287 + A-rich Low_complexity Low_complexity 13 39 0 825 227 61 9 chr1 25922076 25922293 -216742060 - MER3 DNA MER1_type -84 125 1 1136 165 110 28 chr1 25922329 25922547 -216741806 + MER46A DNA MER2_type 1 236 0 958 161 0 0 chr1 25922567 25922722 -216741631 - FRAM SINE Alu -18 158 4 300 171 49 37 chr1 25922820 25922902 -216741451 + L1ME4a LINE L1 5966 6048 -73 857 195 0 0 chr1 25923118 25923267 -216741086 + MER45A DNA AcHobo 24 172 -6 225 333 100 0 chr1 25924053 25924173 -216740180 + MIR SINE MIR 95 226 -36 268 269 21 21 chr1 25924303 25924396 -216739957 + MIR3 SINE MIR 63 155 -53 537 223 16 16 chr1 25924450 25924571 -216739782 + L2 LINE L2 3189 3309 -4 199 238 0 0 chr1 25924672 25924714 -216739639 - L2 LINE L2 -13 3259 3218 316 200 33 50 chr1 25924970 25925090 -216739263 - L1ME4a LINE L1 -40 6081 5964 225 301 21 11 chr1 25925955 25925972 -216738381 + LTR3b LTR ERVK 231 246 -191 456 67 0 0 chr1 25925972 25926032 -216738321 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 225 301 21 11 chr1 25926032 25926107 -216738246 + LTR3b LTR ERVK 246 324 -113 713 265 20 5 chr1 25926321 25926521 -216737832 - MIR SINE MIR 0 262 60 454 233 77 2 chr1 25926831 25926980 -216737373 - MIR SINE MIR -37 171 27 266 216 176 0 chr1 25927061 25927135 -216737218 + MIR3 SINE MIR 107 193 -15 226 146 42 21 chr1 25927311 25927359 -216736994 + CT-rich Low_complexity Low_complexity 1 49 0 449 183 24 0 chr1 25928190 25928272 -216736081 + MER81 DNA DNA 2 85 -29 403 318 101 62 chr1 25928544 25928899 -216735454 + L2 LINE L2 2886 3254 -18 541 275 203 0 chr1 25928902 25929109 -216735244 - MIR SINE MIR -10 252 4 310 197 15 0 chr1 25929429 25929495 -216734858 - MIR SINE MIR -60 148 82 231 333 0 46 chr1 25930106 25930214 -216734139 - MIR3 SINE MIR -40 168 66 330 300 10 18 chr1 25930240 25930365 -216733988 - MER5A DNA MER1_type 0 178 59 648 287 125 53 chr1 25930608 25931040 -216733313 + Charlie4a DNA MER1_type 13 475 -33 342 222 0 50 chr1 25932202 25932301 -216732052 - MIR SINE MIR -140 122 29 1504 146 0 80 chr1 25933404 25933706 -216730647 - AluSx SINE Alu -34 278 1 1752 231 5 39 chr1 25933706 25933890 -216730463 + L1PA15-16 LINE L1 2589 2778 -4806 1555 178 39 3 chr1 25933890 25934176 -216730177 + AluJb SINE Alu 1 296 -16 1752 231 5 39 chr1 25934176 25934588 -216729765 + L1PA15-16 LINE L1 2778 3172 -4412 356 101 29 0 chr1 25934588 25934657 -216729696 + AluSp/q SINE Alu 232 302 -1 329 132 0 0 chr1 25934658 25934711 -216729642 + L1PA15-16 LINE L1 3289 3341 -4243 23 0 0 0 chr1 25934812 25934835 -216729518 + AT_rich Low_complexity Low_complexity 1 23 0 48 18 0 0 chr1 25935074 25935129 -216729224 + AT_rich Low_complexity Low_complexity 1 55 0 811 160 100 0 chr1 25937093 25937243 -216727110 + L1PB4 LINE L1 5965 6129 -27 216 160 50 34 chr1 25937380 25937499 -216726854 + (TATAA)n Simple_repeat Simple_repeat 4 124 0 289 253 32 43 chr1 25937522 25937850 -216726503 + (TATAA)n Simple_repeat Simple_repeat 1 324 0 * 324 118 106 10 chr1 25937731 25938045 -216726308 + (TA)n Simple_repeat Simple_repeat 1 344 0 205 171 0 71 chr1 25938053 25938123 -216726230 + (TTATA)n Simple_repeat Simple_repeat 1 65 0 290 262 135 16 chr1 25938801 25938927 -216725426 - MIR3 SINE MIR -58 150 10 642 297 86 5 chr1 25939268 25939477 -216724876 + MIR SINE MIR 20 245 -17 21 0 0 0 chr1 25939618 25939639 -216724714 + AT_rich Low_complexity Low_complexity 1 21 0 1767 185 0 10 chr1 25939756 25940070 -216724283 - AluJo SINE Alu 0 312 2 961 272 152 5 chr1 25940294 25940662 -216723691 - LTR33A LTR ERVL -3 520 99 464 232 0 24 chr1 25940965 25941216 -216723137 + (CA)n Simple_repeat Simple_repeat 1 245 0 224 314 83 33 chr1 25941280 25941401 -216722952 - MIR SINE MIR -88 174 48 285 270 0 0 chr1 25942174 25942248 -216722105 + MIR SINE MIR 49 122 -86 194 174 22 0 chr1 25943356 25943402 -216720951 + GA-rich Low_complexity Low_complexity 2 48 0 219 222 0 0 chr1 25943971 25944025 -216720328 + L2 LINE L2 2917 2970 -302 264 300 75 17 chr1 25944189 25944309 -216720044 - MIR3 SINE MIR -52 156 30 456 279 22 15 chr1 25944707 25944843 -216719510 + MIR SINE MIR 15 151 -111 571 272 22 14 chr1 25944995 25945165 -216719188 - MLT1I LTR MaLR -197 223 59 414 309 174 41 chr1 25945325 25945687 -216718666 + L2 LINE L2 2903 3312 -1 193 303 79 0 chr1 25945954 25946030 -216718323 - MIR SINE MIR -89 173 92 1546 255 108 15 chr1 25946155 25946617 -216717736 + MLT1D LTR MaLR 1 505 0 347 347 40 7 chr1 25946910 25947060 -216717293 - MIR3 SINE MIR -26 182 28 338 233 138 35 chr1 25947239 25947355 -216716998 + MIR3 SINE MIR 58 185 -23 461 250 153 14 chr1 25948850 25948994 -216715359 - MER103 DNA DNA -1 165 2 303 215 65 47 chr1 25949201 25949308 -216715045 - MLT1G1 LTR MaLR -442 153 45 187 283 19 0 chr1 25949674 25949727 -216714626 - L2 LINE L2 -11 3302 3249 732 273 230 20 chr1 25949916 25950407 -216713946 + MLT1G1 LTR MaLR 2 595 0 933 169 36 0 chr1 25950648 25950843 -216713510 + L1MC3 LINE L1 7574 7775 -10 375 239 71 77 chr1 25950953 25951108 -216713245 - MIR3 SINE MIR -39 169 16 413 260 86 10 chr1 25951113 25951304 -216713049 + MIR3 SINE MIR 11 212 -50 478 264 44 6 chr1 25951657 25951816 -216712537 + LTR33 LTR ERVL 1 165 -356 302 227 109 25 chr1 25951836 25951955 -216712398 - MIR3 SINE MIR -10 198 70 741 260 73 10 chr1 25952240 25952444 -216711909 + MIR SINE MIR 30 246 -16 185 246 46 0 chr1 25952480 25952545 -216711808 - MIR3 SINE MIR -25 183 116 266 316 129 97 chr1 25952807 25953085 -216711268 - L2 LINE L2 -3 3269 2983 700 313 110 14 chr1 25953090 25953534 -216710819 - L2 LINE L2 0 3313 2827 220 347 32 0 chr1 25953949 25954044 -216710309 + MIR SINE MIR 36 133 -75 25 0 0 0 chr1 25954670 25954695 -216709658 + GC_rich Low_complexity Low_complexity 1 25 0 454 204 63 56 chr1 25955212 25955354 -216708999 + MIR3 SINE MIR 3 145 -63 307 287 21 11 chr1 25955411 25955505 -216708848 - MIR3 SINE MIR -26 182 88 475 303 0 0 chr1 25955792 25955914 -216708439 - MIR3 SINE MIR -5 203 82 2292 104 7 7 chr1 25956565 25956874 -216707479 - AluSg SINE Alu -1 309 1 281 298 12 12 chr1 25957431 25957515 -216706838 - MER5A DNA MER1_type -32 157 74 1364 183 0 0 chr1 25957797 25958010 -216706343 + AluSg/x SINE Alu 85 297 -15 907 278 66 66 chr1 25958453 25958920 -216705433 - MLT1J LTR MaLR 0 511 45 342 301 24 24 chr1 25958945 25959068 -216705285 - L3 LINE CR1 -193 1384 1262 362 236 31 8 chr1 25959328 25959455 -216704898 - L2 LINE L2 -217 3055 2926 429 198 0 12 chr1 25960779 25960860 -216703493 + MER20 DNA MER1_type 1 80 -139 1711 98 0 0 chr1 25961572 25961787 -216702566 + AluY SINE Alu 1 215 -96 1523 255 83 43 chr1 25961980 25962484 -216701869 - L1M4 LINE L1 -1336 4810 4327 2244 104 17 0 chr1 25962484 25962773 -216701580 - AluSp SINE Alu -19 294 1 1523 255 83 43 chr1 25962773 25962876 -216701477 - L1M4 LINE L1 -1819 4327 4230 690 181 0 30 chr1 25962876 25963009 -216701344 - FLAM_C SINE Alu -4 129 1 1523 255 83 43 chr1 25963009 25963369 -216700984 - L1M4 LINE L1 -1916 4230 3804 250 212 24 123 chr1 25963397 25963489 -216700864 - L1M4 LINE L1 -2726 3420 3351 2169 122 14 0 chr1 25963489 25963784 -216700569 - AluSq SINE Alu -14 299 1 250 212 24 123 chr1 25963784 25963861 -216700492 - L1M4 LINE L1 -2795 3351 3268 271 298 0 65 chr1 25964408 25964532 -216699821 + MIR SINE MIR 100 215 -47 353 283 74 24 chr1 25964810 25965192 -216699161 - L1MC3 LINE L1 -221 5949 5597 1883 188 78 32 chr1 25965212 25965675 -216698678 - MLT1D LTR MaLR 0 505 22 2143 108 11 0 chr1 25965827 25966128 -216698225 - AluSx SINE Alu 0 304 1 331 195 77 16 chr1 25966148 25966313 -216698040 - L1MD2 LINE L1 -16 6343 6070 726 78 0 0 chr1 25966964 25967066 -216697287 + (TTCC)n Simple_repeat Simple_repeat 4 105 0 364 288 23 15 chr1 25967496 25967628 -216696725 - MIR3 SINE MIR -17 191 59 213 233 93 47 chr1 25967743 25967829 -216696524 - MIR SINE MIR -57 151 62 338 276 22 67 chr1 25967974 25968061 -216696292 - MIR SINE MIR -61 147 67 1597 181 9 55 chr1 25968061 25968386 -216695967 - AluJb SINE Alu 0 312 3 338 276 22 67 chr1 25968386 25968432 -216695921 - MIR SINE MIR -141 67 20 401 289 25 8 chr1 25969610 25969731 -216694622 + MIR SINE MIR 49 171 -91 268 288 76 25 chr1 25969856 25969974 -216694379 + MIR3 SINE MIR 11 134 -74 190 363 0 11 chr1 25970053 25970144 -216694209 + MIR SINE MIR 8 97 -165 419 255 7 40 chr1 25970353 25970502 -216693851 - L2 LINE L2 -218 3054 2911 1550 212 21 16 chr1 25970622 25970994 -216693359 - MLT1A2 LTR MaLR 0 374 1 262 263 192 0 chr1 25971063 25971162 -216693191 + L2 LINE L2 3150 3267 -5 829 279 43 23 chr1 25971304 25971609 -216692744 - L2 LINE L2 0 3313 3003 2309 229 62 9 chr1 25971610 25971671 -216692682 + MLT1F1 LTR MaLR 3 59 -508 2286 128 0 0 chr1 25971671 25971976 -216692377 + AluSx SINE Alu 1 305 -7 2309 229 62 9 chr1 25971976 25972446 -216691907 + MLT1F1 LTR MaLR 59 562 -5 217 234 68 0 chr1 25972668 25972736 -216691617 - MIR SINE MIR -87 121 49 215 343 38 9 chr1 25972769 25972874 -216691479 + MER5A DNA MER1_type 64 171 -18 222 256 0 39 chr1 25972945 25973023 -216691330 + L2 LINE L2 2985 3059 -213 464 228 0 24 chr1 25973493 25973744 -216690609 + (TG)n Simple_repeat Simple_repeat 1 245 0 474 251 22 25 chr1 25974460 25974639 -216689714 - MIR SINE MIR 0 262 41 298 326 37 22 chr1 25974646 25974781 -216689572 - MIR SINE MIR -105 157 21 288 305 21 0 chr1 25974944 25975039 -216689314 - MIR SINE MIR -116 146 50 249 305 162 9 chr1 25975554 25975659 -216688694 - MIR SINE MIR -71 137 17 242 300 25 0 chr1 25975667 25975747 -216688606 + MIR SINE MIR 65 146 -62 1028 258 81 32 chr1 25975758 25976130 -216688223 - LTR16C LTR ERVL 0 491 102 73 12 0 0 chr1 25976177 25976257 -216688096 + AT_rich Low_complexity Low_complexity 1 80 0 1513 166 33 44 chr1 25976263 25976534 -216687819 - AluJb SINE Alu -44 268 1 5788 239 109 40 chr1 25976896 25977405 -216686948 - HAL1 LINE L1 0 2507 2035 1801 148 7 22 chr1 25977405 25977676 -216686677 + AluJb SINE Alu 1 267 -45 441 0 0 0 chr1 25977683 25977732 -216686621 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 5788 239 109 40 chr1 25977732 25979469 -216684884 - HAL1 LINE L1 -477 2030 96 332 280 5 83 chr1 25979617 25979746 -216684607 + L1M4 LINE L1 4531 4643 -1503 1741 164 36 0 chr1 25979746 25980043 -216684310 + AluSx SINE Alu 1 307 0 332 280 5 83 chr1 25980043 25980105 -216684248 + L1M4 LINE L1 4643 4708 -1438 2024 157 0 0 chr1 25980106 25980435 -216683918 + AluJb SINE Alu 1 329 0 2576 192 72 25 chr1 25980435 25981004 -216683349 + LTR48B LTR ERV1 30 625 -19 374 276 179 8 chr1 25981390 25981513 -216682840 + L2 LINE L2 3125 3268 -4 604 326 103 39 chr1 25981609 25981747 -216682606 - L2 LINE L2 -1 3271 3143 2331 118 28 3 chr1 25981747 25982102 -216682251 + THE1B LTR MaLR 1 364 0 604 326 103 39 chr1 25982102 25982399 -216681954 - L2 LINE L2 -129 3143 2808 703 185 0 8 chr1 25982645 25982775 -216681578 - FLAM_C SINE Alu 0 133 5 572 225 18 77 chr1 25982930 25983347 -216681006 + MLT1D LTR MaLR 12 458 -9 306 286 134 17 chr1 25983536 25983655 -216680698 + MIR SINE MIR 37 169 -93 239 264 55 11 chr1 25983714 25983805 -216680548 + MIR SINE MIR 21 115 -147 183 256 0 90 chr1 25984282 25984360 -216679993 - MIR SINE MIR -79 183 113 253 241 12 48 chr1 25984554 25984637 -216679716 - L1ME4a LINE L1 -65 6056 5977 725 274 102 12 chr1 25985368 25985700 -216678653 - L2 LINE L2 -14 3299 2938 350 175 125 0 chr1 25985873 25985953 -216678400 + MER53 DNA DNA 94 183 -6 206 310 67 54 chr1 25986050 25986289 -216678064 - L2 LINE L2 -557 2757 2516 198 360 81 0 chr1 25987001 25987187 -216677166 - L2 LINE L2 -2879 435 235 310 314 59 13 chr1 25988072 25988225 -216676128 + L2 LINE L2 2904 3063 -209 183 174 43 101 chr1 25988268 25988337 -216676016 + L2 LINE L2 3200 3264 -8 302 332 62 41 chr1 25988357 25988601 -216675752 - MIR SINE MIR -6 256 8 2259 149 6 3 chr1 25988918 25989280 -216675073 + MLT2D LTR ERVL 3 365 -49 874 241 21 25 chr1 25989285 25989522 -216674831 - MLT1K LTR MaLR -159 429 194 660 255 116 14 chr1 25989799 25990015 -216674338 - L3 LINE CR1 -30 1547 1310 431 316 102 5 chr1 25990124 25990320 -216674033 - MIR SINE MIR -36 226 12 295 293 26 17 chr1 25990329 25990445 -216673908 - L3 LINE CR1 -383 1194 1078 1450 259 64 97 chr1 25990446 25991053 -216673300 - MLT1K LTR MaLR 0 588 2 201 345 12 0 chr1 25991124 25991208 -216673145 - L3 LINE CR1 -548 1029 945 490 246 41 16 chr1 25991329 25991451 -216672902 + L2 LINE L2 3189 3313 0 1521 254 108 32 chr1 25991522 25991928 -216672425 - L2 LINE L2 -90 3223 2849 1822 158 3 31 chr1 25991928 25992245 -216672108 - AluJb SINE Alu -4 308 1 1521 254 108 32 chr1 25992245 25992760 -216671593 - L2 LINE L2 -464 2849 2241 257 315 54 2 chr1 25992877 25992992 -216671361 - MIR SINE MIR -63 145 54 840 283 29 22 chr1 25993110 25993421 -216670932 - MLT1K LTR MaLR -68 520 208 247 274 20 0 chr1 25993792 25993894 -216670459 + L2 LINE L2 2866 2969 -303 272 276 197 0 chr1 25993955 25994082 -216670271 + L2 LINE L2 3121 3272 0 457 300 29 0 chr1 25994618 25994758 -216669595 - MIR SINE MIR -73 189 46 216 0 0 0 chr1 25994799 25994823 -216669530 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 506 176 63 75 chr1 25994823 25994982 -216669371 + MER63A DNA MER1_type 54 210 0 422 264 72 31 chr1 25995738 25995931 -216668422 + MIR SINE MIR 47 247 -15 913 229 21 0 chr1 25996055 25996247 -216668106 + MIR SINE MIR 67 262 0 254 271 58 52 chr1 25996589 25996744 -216667609 + MLT1K LTR MaLR 100 255 -333 258 284 40 14 chr1 25996847 25996921 -216667432 + MIR SINE MIR 36 111 -97 277 260 260 8 chr1 25997007 25997130 -216667223 - MIR SINE MIR -96 166 13 308 281 22 0 chr1 25997252 25997341 -216667012 + MIR SINE MIR 58 148 -60 200 275 199 0 chr1 25997963 25998094 -216666259 + MIR3 SINE MIR 30 186 -22 200 259 74 49 chr1 25998558 25998639 -216665714 + MIR3 SINE MIR 111 193 -15 202 342 112 0 chr1 25998945 25999097 -216665256 + L2 LINE L2 2870 3038 -234 403 261 33 20 chr1 25999595 25999748 -216664605 + (GGTTG)n Simple_repeat Simple_repeat 1 155 0 328 175 36 119 chr1 25999787 25999981 -216664372 + (GGTTG)n Simple_repeat Simple_repeat 2 179 0 213 39 0 0 chr1 26000684 26000710 -216663643 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2979 16 0 0 chr1 26000718 26001036 -216663317 - AluYb8 SINE Alu 0 318 1 324 371 14 7 chr1 26001429 26001572 -216662781 - MIR3 SINE MIR -31 177 34 300 200 43 0 chr1 26001610 26001680 -216662673 + MIR SINE MIR 58 130 -78 1062 182 34 5 chr1 26001686 26001895 -216662458 + MER20 DNA MER1_type 1 215 -4 591 178 19 0 chr1 26001905 26002012 -216662341 + MER81 DNA DNA 6 114 0 307 276 65 24 chr1 26002465 26002588 -216661765 + L2 LINE L2 3144 3271 -1 2335 85 3 23 chr1 26002859 26003164 -216661189 - AluSx SINE Alu -13 299 1 418 226 52 9 chr1 26003231 26003346 -216661007 + MIR SINE MIR 65 184 -78 205 171 0 71 chr1 26004378 26004448 -216659905 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 293 88 113 6 chr1 26004456 26004616 -216659737 + (TA)n Simple_repeat Simple_repeat 1 177 0 249 235 45 45 chr1 26004628 26004807 -216659546 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 295 286 28 34 chr1 26004747 26004925 -216659428 + (TTACG)n Simple_repeat Simple_repeat 3 179 0 307 279 89 95 chr1 26004979 26005067 -216659286 - L1MC5 LINE L1 -204 7757 7670 249 169 41 29 chr1 26005067 26005239 -216659114 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 307 279 89 95 chr1 26005239 26005327 -216659026 - L1MC5 LINE L1 -291 7670 7412 262 339 120 6 chr1 26005861 26006044 -216658309 - MER113 DNA MER1_type? -83 438 235 1153 208 115 91 chr1 26006076 26006585 -216657768 + MLT1E3 LTR MaLR 45 622 -2 1852 89 0 0 chr1 26006601 26006837 -216657516 - AluSx SINE Alu -76 236 1 1297 258 120 34 chr1 26006922 26007430 -216656923 + MLT1H1 LTR MaLR 1 552 -3 185 302 0 0 chr1 26007577 26007620 -216656733 - L2 LINE L2 -11 3261 3219 182 200 0 25 chr1 26007723 26007763 -216656590 + L2 LINE L2 3270 3308 -5 262 233 233 0 chr1 26007795 26007898 -216656455 - L2 LINE L2 -1 3271 3145 485 278 148 22 chr1 26007999 26008229 -216656124 - MIR SINE MIR -2 260 2 180 380 85 8 chr1 26009454 26009583 -216654770 - L2 LINE L2 -1 3271 3133 255 339 150 22 chr1 26009696 26009923 -216654430 - L2 LINE L2 -339 2975 2720 1679 177 34 0 chr1 26009971 26010265 -216654088 - AluJb SINE Alu -8 304 1 1949 102 11 0 chr1 26010274 26010565 -216653788 - AluSc SINE Alu 0 313 20 285 308 0 13 chr1 26010815 26010893 -216653460 - MIR SINE MIR -107 155 79 2210 197 30 17 chr1 26012577 26013050 -216651303 + MLT1F LTR MaLR 57 535 -7 1657 188 48 24 chr1 26013118 26013221 -216651132 + LTR37B LTR ERV1 1 100 -368 2254 144 55 0 chr1 26013221 26013567 -216650786 + MLT1A1 LTR MaLR 1 365 0 1657 188 48 24 chr1 26013567 26013920 -216650433 + LTR37B LTR ERV1 100 468 0 270 303 135 45 chr1 26013931 26014109 -216650244 - L3 LINE CR1 -126 1451 1258 21 0 0 0 chr1 26014170 26014191 -216650162 + AT_rich Low_complexity Low_complexity 1 21 0 187 403 0 0 chr1 26014751 26014823 -216649530 + L2 LINE L2 3140 3211 -61 771 175 19 25 chr1 26015436 26015596 -216648757 - MIR SINE MIR -75 187 29 519 294 87 0 chr1 26015670 26015854 -216648499 + MIR SINE MIR 46 245 -17 187 314 12 23 chr1 26016143 26016229 -216648124 + MIR SINE MIR 21 105 -157 237 299 119 60 chr1 26016277 26016411 -216647942 + MIR SINE MIR 117 258 -4 291 377 31 0 chr1 26016420 26016550 -216647803 - MIR SINE MIR -70 192 59 426 326 62 5 chr1 26017070 26017263 -216647090 - MIR SINE MIR -51 211 8 218 256 167 13 chr1 26017309 26017387 -216646966 + MER5B DNA MER1_type 1 90 -88 2047 130 16 0 chr1 26017408 26017743 -216646610 + AluSx SINE Alu 1 340 0 281 270 0 0 chr1 26017782 26017845 -216646508 - MIR SINE MIR -55 153 91 413 221 84 0 chr1 26018523 26018618 -216645735 + MIR3 SINE MIR 82 184 -24 2294 113 0 0 chr1 26018702 26019013 -216645340 + AluSx SINE Alu 1 311 -1 257 259 19 0 chr1 26019363 26019417 -216644936 + MIR SINE MIR 15 69 -193 235 318 91 23 chr1 26020318 26020450 -216643903 + MIR SINE MIR 6 146 -116 187 378 0 11 chr1 26020578 26020668 -216643685 - MIR3 SINE MIR -25 183 95 268 280 0 56 chr1 26020757 26020864 -216643489 + MIR3 SINE MIR 87 187 -21 492 255 76 0 chr1 26021452 26021609 -216642744 + MIR3 SINE MIR 2 170 -38 477 273 0 0 chr1 26022276 26022674 -216641679 + (CA)n Simple_repeat Simple_repeat 1 398 0 225 298 0 0 chr1 26022694 26022798 -216641555 + (CA)n Simple_repeat Simple_repeat 1 104 0 283 296 43 84 chr1 26023000 26023222 -216641131 - MIR SINE MIR -42 220 4 405 254 39 16 chr1 26024095 26024262 -216640091 + MER5A DNA MER1_type 6 178 0 271 130 22 0 chr1 26024443 26024489 -216639864 + MIR SINE MIR 81 127 -81 229 333 74 9 chr1 26025868 26025976 -216638377 + MIR SINE MIR 100 214 -48 727 231 61 106 chr1 26025993 26026257 -216638096 - MIR SINE MIR -10 252 1 597 306 56 37 chr1 26026303 26026651 -216637702 + L2 LINE L2 2915 3272 0 297 317 77 0 chr1 26028021 26028125 -216636228 + MIR3 SINE MIR 87 198 -10 276 271 59 0 chr1 26028212 26028297 -216636056 - MIR SINE MIR -81 127 38 393 320 39 0 chr1 26028503 26028659 -216635694 - MIR3 SINE MIR -35 173 11 888 161 0 7 chr1 26028684 26028833 -216635520 + FRAM SINE Alu 1 148 -28 180 0 0 0 chr1 26028833 26028853 -216635500 + (TAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr1 26029247 26029270 -216635083 + AT_rich Low_complexity Low_complexity 1 23 0 447 324 43 0 chr1 26030069 26030208 -216634145 + MIR SINE MIR 12 156 -106 193 304 0 0 chr1 26032073 26032119 -216632234 + L2 LINE L2 3217 3262 -10 367 274 118 33 chr1 26032134 26032287 -216632066 + L1ME4a LINE L1 5926 6091 -30 557 307 118 13 chr1 26032535 26032763 -216631590 + MIR SINE MIR 8 259 -3 2200 127 0 6 chr1 26032774 26033088 -216631265 - AluSx SINE Alu 0 312 1 435 183 47 6 chr1 26033652 26034040 -216630313 + (TGGA)n Simple_repeat Simple_repeat 1 403 0 315 323 89 25 chr1 26034245 26034403 -216629950 - L2 LINE L2 -2 3270 3103 265 254 0 42 chr1 26034726 26034797 -216629556 + MIR3 SINE MIR 101 168 -40 * 443 325 9 0 chr1 26034793 26034907 -216629446 - MIR SINE MIR -1 261 147 446 240 91 26 chr1 26035655 26035809 -216628544 - MIR SINE MIR -92 170 7 192 211 211 0 chr1 26035960 26036031 -216628322 + L2 LINE L2 3170 3255 -17 325 293 38 47 chr1 26036259 26036365 -216627988 + MIR SINE MIR 20 124 -138 399 276 35 0 chr1 26036863 26036979 -216627374 + MIR SINE MIR 31 150 -58 181 278 111 0 chr1 26037060 26037132 -216627221 - MIR SINE MIR -124 138 59 288 276 67 9 chr1 26037139 26037244 -216627109 + MIR SINE MIR 20 130 -78 465 66 0 0 chr1 26037904 26037965 -216626388 + (TG)n Simple_repeat Simple_repeat 2 62 0 200 167 28 0 chr1 26038068 26038104 -216626249 - MIR SINE MIR -116 146 110 758 175 0 16 chr1 26038319 26038502 -216625851 + (CCA)n Simple_repeat Simple_repeat 1 180 0 248 242 20 0 chr1 26038504 26038603 -216625750 + (CACCAT)n Simple_repeat Simple_repeat 5 105 0 658 234 0 12 chr1 26038618 26039047 -216625306 + (CCA)n Simple_repeat Simple_repeat 1 423 0 982 260 14 5 chr1 26039365 26039588 -216624765 - MIR SINE MIR -37 225 1 452 266 35 0 chr1 26039649 26039762 -216624591 + L2 LINE L2 3197 3313 0 498 239 12 32 chr1 26039942 26040145 -216624208 - MIR SINE MIR -27 235 39 237 65 0 0 chr1 26040298 26040329 -216624024 + (CACCC)n Simple_repeat Simple_repeat 4 34 0 393 297 29 14 chr1 26040640 26040778 -216623575 - MIR SINE MIR -29 233 94 238 256 49 61 chr1 26040975 26041057 -216623296 - MIR SINE MIR 0 262 182 * 1119 222 92 35 chr1 26041045 26041414 -216622939 - L2 LINE L2 0 3313 2924 452 252 63 9 chr1 26041528 26041639 -216622714 - MIR SINE MIR -72 136 20 373 265 74 19 chr1 26042437 26042599 -216621754 - MIR3 SINE MIR -27 181 11 309 226 108 0 chr1 26042821 26042914 -216621439 + MIR SINE MIR 100 202 -60 878 238 94 28 chr1 26043079 26043398 -216620955 + LTR16C LTR ERVL 149 488 -3 378 291 165 11 chr1 26043401 26043583 -216620770 - MIR SINE MIR -49 213 4 497 286 26 0 chr1 26043738 26043892 -216620461 - L2 LINE L2 -230 3042 2885 24 0 0 0 chr1 26044102 26044126 -216620227 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr1 26044141 26044161 -216620192 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 303 264 73 39 chr1 26044176 26044354 -216619999 - L1 LINE L1 -1071 5075 4892 300 62 21 0 chr1 26044531 26044579 -216619774 - MER52C LTR ERV1 0 1278 1230 4576 229 85 50 chr1 26044584 26046045 -216618308 - MER52A LTR ERV1 -243 1512 1 1200 174 60 30 chr1 26046044 26046421 -216617932 - MLT1D LTR MaLR -3 502 85 * 1129 196 8 36 chr1 26046421 26046671 -216617682 - MLT1D-int LTR MaLR -141 1230 988 232 159 16 32 chr1 26046703 26046766 -216617587 + L1M4 LINE L1 4951 5012 -1134 * 972 227 97 14 chr1 26046765 26047043 -216617310 + L1ME1 LINE L1 5857 6157 -9 2119 91 0 55 chr1 26047043 26047351 -216617002 - AluSc SINE Alu -18 291 1 750 125 30 12 chr1 26047398 26047566 -216616787 + GA-rich Low_complexity Low_complexity 3 173 0 657 322 93 4 chr1 26048092 26048328 -216616025 + MIR SINE MIR 5 261 -1 323 258 54 0 chr1 26048745 26048838 -216615515 + MIR SINE MIR 56 153 -55 405 228 61 18 chr1 26048876 26048990 -216615363 - MIR SINE MIR -27 235 117 193 339 0 0 chr1 26049041 26049097 -216615256 - MIR SINE MIR -63 145 90 675 276 14 28 chr1 26049837 26050051 -216614302 - MIR SINE MIR -3 259 49 279 319 98 6 chr1 26051511 26051674 -216612679 - L1MC4a LINE L1 -1922 5886 5709 260 54 0 0 chr1 26051781 26051818 -216612535 + MER4A LTR ERV1 1 37 -627 326 345 36 7 chr1 26052852 26052991 -216611362 - MER5B DNA MER1_type 0 178 36 375 246 161 0 chr1 26053159 26053289 -216611064 - MER104 DNA Tc2 -26 154 4 327 371 117 26 chr1 26053387 26053816 -216610537 + L2 LINE L2 2825 3292 -21 423 314 104 36 chr1 26054243 26054463 -216609890 + MIR SINE MIR 18 252 -10 1333 221 32 50 chr1 26054971 26055351 -216609002 + MLT1A2 LTR MaLR 2 374 0 332 200 0 0 chr1 26055353 26055413 -216608940 + MIR SINE MIR 79 138 -124 240 345 125 30 chr1 26055960 26056192 -216608161 - MIR SINE MIR -1 261 8 769 171 6 11 chr1 26056759 26056940 -216607413 + CT-rich Low_complexity Low_complexity 1 180 0 249 108 0 0 chr1 26056970 26057007 -216607346 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 198 333 39 0 chr1 26057688 26057766 -216606587 + MIR SINE MIR 66 146 -62 340 239 55 18 chr1 26058303 26058412 -216605941 + MIR SINE MIR 33 145 -63 457 250 17 50 chr1 26058412 26058592 -216605761 - LTR16B LTR ERVL 0 464 291 539 279 120 5 chr1 26059538 26059742 -216604611 - MIR SINE MIR -4 258 37 250 267 70 0 chr1 26059848 26059934 -216604419 - MIR SINE MIR -112 150 59 16794 32 0 0 chr1 26060707 26063576 -216600777 + L1PA3 LINE L1 3264 6153 -2 729 191 62 6 chr1 26063624 26063786 -216600567 + MIR SINE MIR 61 231 -31 234 290 0 14 chr1 26063812 26063881 -216600472 - L1MC/D LINE L1 -2166 5642 5575 296 207 0 0 chr1 26064380 26064438 -216599915 + MER96 DNA MER1_type? 115 172 -3 283 219 0 61 chr1 26064440 26064522 -216599831 + MIR SINE MIR 116 192 -70 216 67 0 0 chr1 26064689 26064719 -216599634 + (TG)n Simple_repeat Simple_repeat 2 31 0 272 233 0 78 chr1 26065074 26065177 -216599176 - MIR SINE MIR -80 182 88 2223 115 3 3 chr1 26065777 26066089 -216598264 + AluSq SINE Alu 1 312 -1 241 310 26 35 chr1 26066127 26066240 -216598113 - MIR SINE MIR -33 229 118 991 286 85 24 chr1 26066241 26066699 -216597654 - LTR16C LTR ERVL -2 489 4 358 258 22 0 chr1 26066701 26066790 -216597563 - MIR SINE MIR -84 124 34 369 0 0 0 chr1 26067076 26067117 -216597236 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 451 284 0 68 chr1 26067223 26067413 -216596940 + Charlie8 DNA MER1_type 4 180 -2237 384 253 63 32 chr1 26067543 26067701 -216596652 + MIR3 SINE MIR 22 184 -24 190 360 50 0 chr1 26069162 26069262 -216595091 - MIR SINE MIR -113 149 45 265 317 5 54 chr1 26070477 26070663 -216593690 + C-rich Low_complexity Low_complexity 4 180 0 * 381 337 12 6 chr1 26070564 26070733 -216593620 + CT-rich Low_complexity Low_complexity 3 172 0 946 264 31 56 chr1 26071019 26071240 -216593113 + L1ME LINE L1 529 754 -5247 1905 152 0 14 chr1 26071240 26071557 -216592796 + AluSq SINE Alu 1 313 0 946 264 31 56 chr1 26071557 26071826 -216592527 + L1ME LINE L1 754 1456 -4545 351 0 0 0 chr1 26072330 26072369 -216591984 + (CA)n Simple_repeat Simple_repeat 2 40 0 804 185 60 38 chr1 26073854 26074038 -216590315 - MER5A DNA MER1_type 0 189 2 2207 126 0 0 chr1 26074123 26074417 -216589936 + AluSx SINE Alu 5 298 -14 358 234 9 36 chr1 26075252 26075363 -216588990 - MER117 DNA MER1_type -33 164 57 32 26 0 0 chr1 26075399 26075438 -216588915 + AT_rich Low_complexity Low_complexity 1 39 0 193 312 91 0 chr1 26075457 26075534 -216588819 + L2 LINE L2 3226 3309 -4 329 312 96 8 chr1 26075933 26076058 -216588295 - MIR3 SINE MIR -49 159 24 2221 121 0 0 chr1 26076102 26076391 -216587962 + AluSg SINE Alu 1 289 -21 456 276 167 9 chr1 26076558 26076779 -216587574 + L2 LINE L2 2804 3059 -254 232 241 101 13 chr1 26076811 26076890 -216587463 + L2 LINE L2 3228 3313 0 252 183 118 65 chr1 26076933 26077026 -216587327 + MIR SINE MIR 35 132 -76 279 93 0 0 chr1 26078066 26078109 -216586244 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 128 0 0 chr1 26078450 26078489 -216585864 - Alu SINE Alu -6 295 257 428 290 27 10 chr1 26078555 26078829 -216585524 - MER115 DNA AcHobo -318 375 33 663 312 45 25 chr1 26078851 26079291 -216585062 + L2 LINE L2 2638 3084 -229 769 237 36 41 chr1 26079458 26079629 -216584724 - MIR SINE MIR -2 260 89 2222 123 0 26 chr1 26079629 26079937 -216584416 - AluSx SINE Alu -12 300 1 769 237 36 41 chr1 26079937 26079984 -216584369 - MIR SINE MIR -173 89 43 243 0 0 0 chr1 26080098 26080125 -216584228 + (CA)n Simple_repeat Simple_repeat 2 28 0 485 296 33 33 chr1 26080429 26080642 -216583711 + MIR SINE MIR 48 260 -2 208 329 27 0 chr1 26081557 26081629 -216582724 + MIR SINE MIR 34 107 -155 537 276 96 0 chr1 26081629 26081855 -216582498 + MIR SINE MIR 1 249 -13 1924 151 27 0 chr1 26082456 26082755 -216581598 + AluJb SINE Alu 3 309 -3 513 141 22 60 chr1 26082759 26082943 -216581410 + GA-rich Low_complexity Low_complexity 2 178 0 505 285 72 45 chr1 26083669 26084106 -216580247 + MLT1L LTR MaLR 58 612 -3 247 191 0 107 chr1 26084138 26084222 -216580131 - MLT1K LTR MaLR 0 588 514 22 0 0 0 chr1 26084415 26084437 -216579916 + AT_rich Low_complexity Low_complexity 1 22 0 2498 65 0 0 chr1 26084991 26085284 -216579069 + AluSx SINE Alu 1 293 -19 359 291 31 39 chr1 26085443 26085570 -216578783 + L2 LINE L2 3147 3272 0 2345 105 0 0 chr1 26086260 26086554 -216577799 - AluSx SINE Alu -18 294 1 418 186 12 23 chr1 26086646 26086732 -216577621 - MIR3 SINE MIR -46 162 78 483 141 0 0 chr1 26087009 26087087 -216577266 + AluS SINE Alu 7 84 -229 253 244 37 37 chr1 26087116 26087198 -216577155 + CT-rich Low_complexity Low_complexity 2 83 0 538 248 39 33 chr1 26087234 26087387 -216576966 + MIR3 SINE MIR 34 187 -21 2359 106 3 0 chr1 26087477 26087780 -216576573 - AluSq SINE Alu -9 304 1 2538 175 37 10 chr1 26088543 26089035 -216575318 - MLT1D LTR MaLR 0 505 1 584 262 18 24 chr1 26089065 26089233 -216575120 + MLT1H LTR MaLR 8 174 -375 712 211 36 24 chr1 26089387 26089553 -216574800 + MLT1H LTR MaLR 382 549 0 255 277 0 85 chr1 26089882 26089976 -216574377 + MIR SINE MIR 13 98 -164 2945 41 0 0 chr1 26090040 26090408 -216573945 - L1PA4 LINE L1 -1 6154 5787 1706 62 0 0 chr1 26090408 26090634 -216573719 + L1P LINE L1 1143 1368 -4778 595 246 62 17 chr1 26090869 26091048 -216573305 + MIR SINE MIR 76 262 0 766 231 57 98 chr1 26091406 26091864 -216572489 + MLT1H1 LTR MaLR 115 553 -2 2287 120 0 0 chr1 26092016 26092316 -216572037 + AluSx SINE Alu 6 305 -7 710 259 97 0 chr1 26092375 26092591 -216571762 + MIR SINE MIR 12 248 -14 2255 119 0 3 chr1 26093457 26093760 -216570593 - AluSx SINE Alu -10 302 1 543 281 135 0 chr1 26093911 26094103 -216570250 + MIR SINE MIR 31 248 -14 207 0 0 0 chr1 26095185 26095208 -216569145 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 985 109 29 0 chr1 26095211 26095348 -216569005 - AluSg/x SINE Alu -35 277 137 2471 63 0 13 chr1 26095350 26095650 -216568703 - AluSg SINE Alu -14 296 1 540 236 8 16 chr1 26095654 26095781 -216568572 + MIR SINE MIR 68 193 -69 456 279 134 0 chr1 26095940 26096112 -216568241 - ERVL LTR ERVL -1966 3798 3604 1497 134 5 31 chr1 26096122 26096346 -216568007 + AluJo SINE Alu 1 218 -94 2256 109 20 0 chr1 26096370 26096674 -216567679 + AluSx SINE Alu 1 310 -2 794 353 29 17 chr1 26096769 26097180 -216567173 - ERVL LTR ERVL -2199 3565 3150 665 168 136 77 chr1 26097182 26097265 -216567088 + ORSL DNA AcHobo 2 79 -196 2197 108 17 0 chr1 26097265 26097562 -216566791 + AluSx SINE Alu 1 302 -10 665 168 136 77 chr1 26097562 26097698 -216566655 + ORSL DNA AcHobo 79 234 -41 986 336 0 4 chr1 26097749 26098020 -216566333 - ERVL LTR ERVL -1905 3091 2822 1767 114 0 0 chr1 26098045 26098273 -216566080 - AluSx SINE Alu -83 229 2 1619 206 7 27 chr1 26098287 26098347 -216566006 - Looper DNA T2_type -1 1557 1497 1943 82 4 0 chr1 26098347 26098591 -216565762 - AluY SINE Alu -7 304 60 1619 206 7 27 chr1 26098591 26098942 -216565411 - Looper DNA T2_type -61 1497 1154 1894 158 31 36 chr1 26099561 26099589 -216564764 - Looper DNA T2_type -1107 451 424 1995 179 0 3 chr1 26099589 26099902 -216564451 + AluJb SINE Alu 1 312 0 1894 158 31 36 chr1 26099902 26100292 -216564061 - Looper DNA T2_type -1134 424 35 579 314 60 32 chr1 26100441 26100877 -216563476 - MLT1J2 LTR MaLR -2 448 1 2172 133 0 7 chr1 26100970 26101271 -216563082 + AluSx SINE Alu 1 299 -13 2261 88 7 14 chr1 26101271 26101565 -216562788 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr1 26101565 26101590 -216562763 + AT_rich Low_complexity Low_complexity 1 25 0 2244 93 10 10 chr1 26101724 26102014 -216562339 - AluSx SINE Alu -22 290 1 387 286 0 9 chr1 26102591 26102696 -216561657 - MER5A DNA MER1_type -80 109 6 375 281 92 20 chr1 26103919 26104072 -216560281 - L2 LINE L2 -1 3312 3149 284 227 0 45 chr1 26104065 26104131 -216560222 - MIR SINE MIR 0 262 200 * 286 261 70 38 chr1 26104141 26104298 -216560055 + L1ME4a LINE L1 5922 6083 -38 186 118 0 0 chr1 26104378 26104412 -216559941 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 516 258 172 21 chr1 26105023 26105209 -216559144 - MIR SINE MIR -48 214 1 183 333 107 0 chr1 26105209 26105237 -216559116 + L2 LINE L2 62 98 -3216 599 282 0 13 chr1 26105312 26105461 -216558892 + MIR3 SINE MIR 4 150 -58 622 273 98 8 chr1 26105507 26105743 -216558610 - MIR SINE MIR -3 259 2 194 236 18 18 chr1 26105848 26105903 -216558450 + L2 LINE L2 3211 3265 -7 644 298 16 21 chr1 26106485 26106673 -216557680 - MIR3 SINE MIR -4 204 18 324 263 116 56 chr1 26106883 26107018 -216557335 + MIR SINE MIR 34 186 -76 2461 161 36 9 chr1 26107018 26107439 -216556914 + MSTB1 LTR MaLR 1 432 0 324 263 116 56 chr1 26107439 26107501 -216556852 + MIR SINE MIR 186 243 -19 1624 241 41 2 chr1 26107581 26108016 -216556337 - HsTC2 DNA Tc2 -7 1891 1440 431 91 0 131 chr1 26108061 26108160 -216556193 - FLAM_C SINE Alu 0 143 58 473 223 153 13 chr1 26108162 26108319 -216556034 - HsTC2 DNA Tc2 -446 1452 1274 559 213 249 6 chr1 26108425 26108594 -216555759 - MIR SINE MIR -6 256 47 775 261 47 14 chr1 26108758 26108969 -216555384 - MIR SINE MIR -29 233 16 406 242 24 32 chr1 26109721 26109845 -216554508 - MER5B DNA MER1_type -54 124 2 332 265 51 20 chr1 26109888 26109986 -216554367 - MIR3 SINE MIR -18 190 90 198 0 0 0 chr1 26110394 26110416 -216553937 + (A)n Simple_repeat Simple_repeat 1 22 0 2282 95 7 10 chr1 26110416 26110712 -216553641 + AluSx SINE Alu 1 295 -17 613 245 117 10 chr1 26112034 26112230 -216552123 + MIR SINE MIR 46 262 0 364 213 74 39 chr1 26112219 26112236 -216552117 - MIR SINE MIR -65 143 128 * 326 23 0 23 chr1 26112236 26112280 -216552073 + (CAT)n Simple_repeat Simple_repeat 1 43 0 364 213 74 39 chr1 26112280 26112418 -216551935 - MIR SINE MIR -80 128 4 2508 65 0 0 chr1 26162882 26163174 -216501179 - AluY SINE Alu -19 292 1 1528 91 55 9 chr1 26163608 26163828 -216500525 - MER30 DNA MER1_type 0 230 1 1342 107 0 0 chr1 26164188 26164357 -216499996 + AluJo SINE Alu 1 169 -143 257 301 0 41 chr1 26164832 26164905 -216499448 - Charlie4 DNA MER1_type -4 1957 1888 2374 94 0 0 chr1 26164996 26165295 -216499058 + AluY SINE Alu 1 299 -12 2193 91 3 7 chr1 26165306 26165591 -216498762 + AluSg SINE Alu 1 284 -26 473 88 24 48 chr1 26165593 26165718 -216498635 + (CA)n Simple_repeat Simple_repeat 2 123 0 419 259 28 28 chr1 26166641 26166749 -216497604 - L2 LINE L2 -5 3308 3201 1659 211 79 38 chr1 26166871 26167430 -216496923 - L2 LINE L2 -352 2962 2381 943 167 18 0 chr1 26167911 26168079 -216496274 - AluSg/x SINE Alu 0 310 140 634 506 35 4 chr1 26168182 26168413 -216495940 - AluSg/x SINE Alu 0 312 75 2166 98 0 0 chr1 26168442 26168708 -216495645 + AluSq SINE Alu 1 266 -47 1611 191 3 0 chr1 26168872 26169160 -216495193 - AluJo SINE Alu 0 312 24 2076 130 10 7 chr1 26169224 26169532 -216494821 + AluJb SINE Alu 1 309 -3 1344 180 13 4 chr1 26169994 26170227 -216494126 + AluJo SINE Alu 63 297 -15 2425 83 0 3 chr1 26170998 26171300 -216493053 - AluY SINE Alu -10 301 1 1715 153 0 19 chr1 26171988 26172256 -216492097 - AluJo SINE Alu -16 296 34 2394 69 0 13 chr1 26172331 26172634 -216491719 - AluY SINE Alu -12 299 1 698 229 18 12 chr1 26172658 26172824 -216491529 + MER5A DNA MER1_type 18 184 -5 2147 110 10 7 chr1 26172826 26173118 -216491235 + AluSp SINE Alu 1 293 -20 474 254 0 75 chr1 26173601 26173759 -216490594 + L2 LINE L2 3154 3300 -13 779 200 0 0 chr1 26173759 26173889 -216490464 + FLAM_C SINE Alu 1 130 -3 474 254 0 75 chr1 26173889 26173903 -216490450 + L2 LINE L2 3300 3313 0 252 178 30 56 chr1 26174271 26174385 -216489968 - L1MD3 LINE L1 -1081 6733 6624 2362 82 3 3 chr1 26174816 26175110 -216489243 - AluSc SINE Alu -15 294 1 2247 117 0 7 chr1 26175977 26176277 -216488076 + AluSx SINE Alu 1 298 -14 407 225 146 17 chr1 26176282 26176460 -216487893 + L1ME3 LINE L1 5938 6138 -24 2048 144 3 3 chr1 26176473 26176778 -216487575 - AluSx SINE Alu -7 305 1 22 35 0 0 chr1 26176785 26176814 -216487539 + AT_rich Low_complexity Low_complexity 1 29 0 1519 192 7 18 chr1 26176820 26177106 -216487247 + AluJo SINE Alu 5 287 -25 502 231 0 0 chr1 26177137 26177241 -216487112 + U13 snRNA snRNA 1 104 0 212 0 36 0 chr1 26177242 26177270 -216487083 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 2236 104 3 3 chr1 26177427 26177726 -216486627 + AluSx SINE Alu 1 299 -13 340 319 43 0 chr1 26179237 26179353 -216485000 - MIR3 SINE MIR -12 196 76 502 268 98 38 chr1 26180023 26180206 -216484147 - L3 LINE CR1 -7 1570 1377 2130 108 0 23 chr1 26180370 26180539 -216483814 - AluSx SINE Alu -13 299 139 2271 104 0 0 chr1 26180539 26180837 -216483516 - AluY SINE Alu -13 298 1 2130 108 0 23 chr1 26180837 26180973 -216483380 - AluSx SINE Alu -173 139 1 186 43 0 0 chr1 26180995 26181018 -216483335 + (A)n Simple_repeat Simple_repeat 1 23 0 278 241 169 55 chr1 26181063 26181299 -216483054 + HAL1 LINE L1 1814 2076 -431 198 91 0 0 chr1 26181403 26181436 -216482917 + (A)n Simple_repeat Simple_repeat 1 33 0 844 147 0 22 chr1 26181456 26181592 -216482761 + FLAM_C SINE Alu 1 133 0 689 279 158 35 chr1 26181791 26181884 -216482469 + L2 LINE L2 2683 2763 -550 1708 164 38 17 chr1 26181884 26182171 -216482182 - AluJb SINE Alu -19 293 1 689 279 158 35 chr1 26182171 26182444 -216481909 + L2 LINE L2 2763 3001 -312 798 138 49 0 chr1 26182444 26182567 -216481786 + FLAM_C SINE Alu 1 129 -4 689 279 158 35 chr1 26182567 26182771 -216481582 + L2 LINE L2 3001 3309 -4 234 270 18 63 chr1 26182860 26182971 -216481382 + HAL1 LINE L1 2394 2499 -8 1608 157 20 56 chr1 26184131 26184437 -216479916 + AluJb SINE Alu 1 295 -17 1035 89 0 0 chr1 26184458 26184582 -216479771 + AluSp SINE Alu 1 124 -189 2218 65 44 7 chr1 26184591 26184885 -216479468 + AluY SINE Alu 1 305 -6 22 0 0 0 chr1 26184922 26184944 -216479409 + AT_rich Low_complexity Low_complexity 1 22 0 512 94 0 0 chr1 26185102 26185166 -216479187 - U6 snRNA snRNA -43 64 1 2298 110 3 0 chr1 26185901 26186211 -216478142 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr1 26187055 26187082 -216477271 + AT_rich Low_complexity Low_complexity 1 27 0 912 160 61 28 chr1 26188387 26188599 -216475754 - MER20 DNA MER1_type 0 219 1 1500 151 60 21 chr1 26189712 26190043 -216474310 - L1MC3 LINE L1 -74 7711 7368 1786 158 53 7 chr1 26190053 26190338 -216474015 + AluSx SINE Alu 1 298 -14 458 279 136 34 chr1 26190407 26190587 -216473766 + L2 LINE L2 2562 2722 -591 11836 86 10 4 chr1 26190587 26192157 -216472196 + THE1B-int LTR MaLR 2 1580 0 2073 97 103 30 chr1 26192157 26192496 -216471857 + THE1B LTR MaLR 1 364 0 458 279 136 34 chr1 26192496 26192806 -216471547 + L2 LINE L2 2721 3104 -209 2421 189 67 39 chr1 26192816 26193350 -216471003 + MLT2B3 LTR ERVL 1 549 -5 523 240 149 0 chr1 26193358 26193533 -216470820 + L2 LINE L2 3113 3313 0 2107 125 14 0 chr1 26193800 26194095 -216470258 + AluSx SINE Alu 1 299 -13 2714 36 0 3 chr1 26194098 26194402 -216469951 + AluY SINE Alu 2 304 -7 1373 88 0 0 chr1 26194402 26194573 -216469780 + AluY SINE Alu 133 303 -8 1687 161 48 65 chr1 26194703 26194872 -216469481 + MLT1B LTR MaLR 1 171 -219 2523 71 0 13 chr1 26194872 26195182 -216469171 + AluSg SINE Alu 1 306 -4 1687 161 48 65 chr1 26195182 26195409 -216468944 + MLT1B LTR MaLR 171 390 0 2214 103 7 17 chr1 26196180 26196482 -216467871 + AluSc SINE Alu 1 299 -10 2274 112 10 3 chr1 26196592 26196897 -216467456 + AluSx SINE Alu 1 307 -5 368 217 0 0 chr1 26196934 26196994 -216467359 - Tigger3(Golem) DNA MER2_type -2969 60 1 636 262 165 61 chr1 26197346 26197605 -216466748 - L3 LINE CR1 -7 1570 1269 2134 97 16 38 chr1 26197605 26197925 -216466428 - AluSq SINE Alu 0 313 1 636 262 165 61 chr1 26197925 26197993 -216466360 - L3 LINE CR1 -308 1269 1209 329 248 261 0 chr1 26198118 26198271 -216466082 - MIR SINE MIR -51 211 19 442 183 87 0 chr1 26198287 26198391 -216465962 - MIR SINE MIR -63 145 33 1078 113 21 77 chr1 26198457 26198651 -216465702 - AluSg/x SINE Alu -5 307 125 2227 113 0 0 chr1 26198658 26198959 -216465394 - AluSx SINE Alu -11 301 1 2091 112 0 4 chr1 26199622 26199900 -216464453 - AluSx SINE Alu -16 296 20 2159 122 14 0 chr1 26200064 26200360 -216463993 + AluSx SINE Alu 1 300 -12 460 284 32 42 chr1 26200954 26201072 -216463281 + MIR SINE MIR 31 148 -114 2109 130 0 13 chr1 26201072 26201372 -216462981 - AluSx SINE Alu -14 298 3 460 284 32 42 chr1 26201372 26201443 -216462910 + MIR SINE MIR 148 218 -44 236 245 174 31 chr1 26201572 26201670 -216462683 - MIR SINE MIR -59 203 92 876 184 6 19 chr1 26201836 26201994 -216462359 - FRAM SINE Alu -10 156 1 220 311 27 14 chr1 26202052 26202126 -216462227 + L2 LINE L2 3239 3313 0 939 250 14 45 chr1 26202242 26202375 -216461978 + L1ME1 LINE L1 5806 5942 -224 1877 163 0 7 chr1 26202375 26202670 -216461683 + AluJb SINE Alu 1 293 -19 939 250 14 45 chr1 26202670 26202866 -216461487 + L1ME1 LINE L1 5942 6119 -47 4501 76 2 0 chr1 26202866 26203429 -216460924 + LTR6A LTR ERV1 1 564 0 413 271 0 39 chr1 26203429 26203447 -216460906 + L1MA10 LINE L1 6275 6292 -42 2277 117 0 0 chr1 26203445 26203745 -216460608 - AluSx SINE Alu -12 300 1 263 280 149 0 chr1 26203746 26203853 -216460500 + MIR3 SINE MIR 81 203 -5 2098 113 0 31 chr1 26204426 26204762 -216459591 - AluSx SINE Alu 0 327 1 1866 179 0 7 chr1 26205080 26205381 -216458972 - AluJb SINE Alu -13 299 1 2434 83 3 0 chr1 26205943 26206245 -216458108 + AluSp SINE Alu 1 303 -10 1828 158 25 0 chr1 26206513 26206797 -216457556 - AluJb SINE Alu -11 301 11 251 182 0 0 chr1 26207020 26207064 -216457289 - MER53 DNA DNA 0 189 146 449 270 35 9 chr1 26207292 26207407 -216456946 - MIR3 SINE MIR -19 189 72 2193 130 7 0 chr1 26207530 26207829 -216456524 - AluSx SINE Alu -11 301 1 1557 124 44 0 chr1 26207869 26208094 -216456259 - AluSq SINE Alu -78 235 1 1666 263 50 12 chr1 26208203 26208714 -216455639 + L2 LINE L2 2778 3307 -6 223 281 125 10 chr1 26208930 26209026 -216455327 + L2 LINE L2 3207 3313 0 904 253 8 58 chr1 26209158 26209274 -216455079 + L1ME1 LINE L1 5822 5942 -236 1915 159 0 7 chr1 26209274 26209569 -216454784 + AluJb SINE Alu 1 293 -19 904 253 8 58 chr1 26209569 26209765 -216454588 + L1ME1 LINE L1 5942 6146 -32 4308 79 9 2 chr1 26209765 26210325 -216454028 + LTR6A LTR ERV1 1 564 0 904 253 8 58 chr1 26210325 26210341 -216454012 + L1ME1 LINE L1 6146 6124 -54 2259 117 0 0 chr1 26210341 26210641 -216453712 - AluSx SINE Alu -12 300 1 904 253 8 58 chr1 26210641 26210689 -216453664 + L1ME1 LINE L1 6123 6172 -6 246 174 0 0 chr1 26210690 26210736 -216453617 + GA-rich Low_complexity Low_complexity 1 46 0 257 265 0 15 chr1 26210842 26210910 -216453443 + MIR3 SINE MIR 12 78 -130 260 272 114 76 chr1 26211262 26211311 -216453042 + MIR3 SINE MIR 40 86 -122 2345 101 0 7 chr1 26211311 26211619 -216452734 - AluSx SINE Alu -6 306 1 260 272 114 76 chr1 26211619 26211727 -216452626 + MIR3 SINE MIR 86 203 -5 2015 121 3 28 chr1 26212302 26212636 -216451717 - AluSx SINE Alu 0 327 1 1914 176 0 7 chr1 26212952 26213253 -216451100 - AluJb SINE Alu -13 299 1 2508 67 3 0 chr1 26213818 26214116 -216450237 + AluSp SINE Alu 1 299 -14 1774 160 24 11 chr1 26214384 26214671 -216449682 - AluJb SINE Alu -11 301 11 248 182 0 0 chr1 26214900 26214944 -216449409 - MER53 DNA DNA 0 189 146 426 245 28 19 chr1 26215173 26215279 -216449074 - MIR3 SINE MIR -19 189 83 2085 119 41 0 chr1 26215408 26215701 -216448652 - AluSx SINE Alu -7 305 1 1793 111 4 0 chr1 26215734 26215968 -216448385 - AluSq SINE Alu -78 235 1 1677 263 50 12 chr1 26216077 26216589 -216447764 + L2 LINE L2 2778 3308 -5 309 289 119 25 chr1 26216663 26216822 -216447531 + MIR3 SINE MIR 28 201 -7 537 221 2 10 chr1 26217248 26217364 -216446989 + MIR SINE MIR 15 131 -77 2117 121 50 0 chr1 26217374 26217671 -216446682 - AluSx SINE Alu 0 312 1 235 274 32 53 chr1 26218084 26218179 -216446174 + MIR SINE MIR 104 196 -66 2446 94 0 0 chr1 26218213 26218521 -216445832 + AluY SINE Alu 1 308 -3 237 203 62 16 chr1 26218680 26218744 -216445609 + L2 LINE L2 3205 3271 -1 377 96 0 6 chr1 26218831 26219070 -216445283 - AluSc SINE Alu -7 292 7 1521 221 96 24 chr1 26219075 26219194 -216445159 + L1ME3A LINE L1 5081 5190 -980 1849 158 10 39 chr1 26219194 26219504 -216444849 + AluSx SINE Alu 1 301 -11 1521 221 96 24 chr1 26219504 26220055 -216444298 + L1ME3A LINE L1 5190 5803 -367 257 216 0 0 chr1 26220068 26220119 -216444234 + MER74B LTR ERVL 3 53 -569 239 244 67 52 chr1 26220284 26220419 -216443934 + MER74B LTR ERVL 415 551 -71 451 148 40 30 chr1 26220500 26220601 -216443752 + L1ME3A LINE L1 5825 5926 -244 1211 224 115 33 chr1 26220601 26220967 -216443386 - MSTD LTR MaLR 0 396 1 270 123 185 0 chr1 26220967 26221032 -216443321 - MSTD-int LTR MaLR 0 1735 1659 405 0 0 0 chr1 26221032 26221077 -216443276 + (TA)n Simple_repeat Simple_repeat 2 46 0 1226 155 0 0 chr1 26221077 26221251 -216443102 - AluJo/FRAM SINE Alu -4 308 135 1905 154 7 17 chr1 26221253 26221552 -216442801 - AluJo SINE Alu -10 302 7 4423 222 206 42 chr1 26221556 26222472 -216441881 - MSTD-int LTR MaLR -64 1671 906 1506 61 0 0 chr1 26222472 26222652 -216441701 - AluY SINE Alu -2 309 130 4423 222 206 42 chr1 26222652 26223026 -216441327 - MSTD-int LTR MaLR -829 906 595 2300 122 0 3 chr1 26223026 26223338 -216441015 - AluSq SINE Alu -2 311 1 4423 222 206 42 chr1 26223338 26223481 -216440872 - MSTD-int LTR MaLR -1140 595 2 1090 212 125 39 chr1 26223485 26223844 -216440509 - MSTD LTR MaLR -2 394 5 366 169 84 0 chr1 26223848 26223931 -216440422 + L1ME3A LINE L1 5922 6011 -159 290 241 81 0 chr1 26223933 26224020 -216440333 + L1ME3A LINE L1 6059 6152 -18 306 315 54 27 chr1 26224215 26224364 -216439989 - MIR SINE MIR -79 183 31 796 241 155 24 chr1 26224374 26224788 -216439565 + MER113 DNA MER1_type? 4 471 -50 401 290 57 0 chr1 26225065 26225206 -216439147 - MIR SINE MIR -58 150 33 870 230 29 24 chr1 26225335 26225544 -216438809 - MER63A DNA MER1_type 0 210 1 825 171 43 43 chr1 26225572 26225759 -216438594 - MER5A DNA MER1_type 0 189 3 370 320 77 0 chr1 26225800 26225956 -216438397 + Charlie8 DNA MER1_type 56 223 -2194 293 330 9 36 chr1 26226030 26226142 -216438211 - MIR3 SINE MIR -50 158 50 353 293 147 6 chr1 26226353 26226510 -216437843 + MIR SINE MIR 69 247 -15 408 207 87 73 chr1 26226800 26226950 -216437403 - MIR SINE MIR -44 218 67 562 238 191 0 chr1 26227555 26227702 -216436651 - MER5A DNA MER1_type -6 183 9 894 165 24 0 chr1 26227720 26227890 -216436463 - MER20 DNA MER1_type -17 202 29 2116 99 0 7 chr1 26228119 26228422 -216435931 + AluY SINE Alu 1 301 0 333 0 0 0 chr1 26228423 26228460 -216435893 + (CA)n Simple_repeat Simple_repeat 2 38 0 1233 109 0 12 chr1 26228460 26228637 -216435716 + AluSg/x SINE Alu 126 306 0 400 290 17 51 chr1 26228757 26228933 -216435420 + L2 LINE L2 2909 3078 -194 251 71 24 0 chr1 26229021 26229063 -216435290 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 611 149 25 0 chr1 26229286 26229316 -216435037 - L1MA4 LINE L1 -399 5901 5872 343 229 9 29 chr1 26229316 26229407 -216434946 - L1PA6 LINE L1 -285 5869 5779 2024 111 54 0 chr1 26229407 26229686 -216434667 - AluSx SINE Alu -18 294 1 343 229 9 29 chr1 26229686 26229699 -216434654 - L1PA6 LINE L1 -375 5779 5767 889 165 0 0 chr1 26231021 26231154 -216433199 - FLAM_C SINE Alu 0 133 1 486 237 8 46 chr1 26231158 26231289 -216433064 + MIR SINE MIR 137 262 0 360 249 3 0 chr1 26231840 26231918 -216432435 - MIR SINE MIR -63 145 76 308 145 60 145 chr1 26231921 26232038 -216432315 - L1MEd LINE L1 -5289 830 724 220 250 0 17 chr1 26232665 26232725 -216431628 - MIR SINE MIR -62 146 88 2358 103 0 6 chr1 26232755 26233067 -216431286 - AluSx SINE Alu -2 310 1 2048 95 4 0 chr1 26233879 26234141 -216430212 - AluSx SINE Alu -49 263 1 2098 147 27 0 chr1 26234143 26234443 -216429910 - AluJo SINE Alu -4 308 1 1386 225 37 42 chr1 26234713 26234919 -216429434 + L2 LINE L2 2513 2718 -596 2184 120 7 0 chr1 26234919 26235220 -216429133 + AluSx SINE Alu 1 303 -9 1386 225 37 42 chr1 26235220 26235391 -216428962 + L2 LINE L2 2718 2888 -426 681 214 22 39 chr1 26235442 26235555 -216428798 + MER97c DNA MER1_type? 5 115 -975 2198 103 3 0 chr1 26235555 26235869 -216428484 - AluSx SINE Alu 0 312 1 681 214 22 39 chr1 26235869 26235933 -216428420 + MER97c DNA MER1_type? 115 179 -911 765 288 100 42 chr1 26235954 26236284 -216428069 + L2 LINE L2 2965 3313 0 3170 169 69 36 chr1 26237284 26238026 -216426327 + L1MC4 LINE L1 7046 7762 -280 1663 155 106 29 chr1 26238026 26238198 -216426155 - THE1C LTR MaLR 0 375 218 204 40 0 0 chr1 26238198 26238223 -216426130 + (GA)n Simple_repeat Simple_repeat 1 25 0 1663 155 106 29 chr1 26238223 26238398 -216425955 - THE1C LTR MaLR -157 218 1 3170 169 69 36 chr1 26238398 26238412 -216425941 + L1MC4 LINE L1 7762 7774 -268 2261 124 7 0 chr1 26238412 26238718 -216425635 + AluSx SINE Alu 1 308 -4 3170 169 69 36 chr1 26238718 26238741 -216425612 + L1MC4 LINE L1 7774 7852 -190 2301 110 0 0 chr1 26238795 26239094 -216425259 + AluSq SINE Alu 1 299 -14 707 271 164 18 chr1 26239107 26239491 -216424862 + L2 LINE L2 488 927 -2387 754 208 13 103 chr1 26239544 26239798 -216424555 - MIR SINE MIR -21 241 16 * 784 301 92 40 chr1 26239787 26240288 -216424065 + L2 LINE L2 998 1524 -1790 36 40 0 0 chr1 26241549 26241599 -216422754 + AT_rich Low_complexity Low_complexity 1 50 0 3305 247 152 23 chr1 26241599 26242728 -216421625 + L2 LINE L2 1512 2786 -528 663 207 72 11 chr1 26242784 26242976 -216421377 - MIR SINE MIR -57 205 5 464 267 17 0 chr1 26242982 26243102 -216421251 + MIR3 SINE MIR 50 171 -37 563 120 0 20 chr1 26243423 26243444 -216420909 + (TCTA)n Simple_repeat Simple_repeat 1 21 -77 2297 128 0 0 chr1 26243444 26243757 -216420596 - AluSq SINE Alu 0 313 1 563 120 0 20 chr1 26243757 26243835 -216420518 + (TCTA)n Simple_repeat Simple_repeat 21 98 0 231 158 0 0 chr1 26243835 26243873 -216420480 - Alu SINE Alu -10 123 86 999 153 19 77 chr1 26243876 26244085 -216420268 - AluJo SINE Alu -94 218 22 258 32 0 0 chr1 26244375 26244406 -216419947 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 283 243 57 0 chr1 26244518 26244588 -216419765 + MIR SINE MIR 65 138 -124 326 278 172 18 chr1 26244792 26244959 -216419394 + MIR3 SINE MIR 9 193 -63 208 219 94 31 chr1 26245222 26245286 -216419067 - L2 LINE L2 -189 3083 3016 2250 125 0 0 chr1 26245466 26245771 -216418582 + AluSx SINE Alu 1 305 -7 258 282 113 57 chr1 26245808 26245932 -216418421 - MIR SINE MIR -114 148 18 656 308 66 5 chr1 26246209 26246407 -216417946 + MIR SINE MIR 1 210 -52 1148 153 0 42 chr1 26246489 26246678 -216417675 + AluJo SINE Alu 1 181 -131 1655 175 4 4 chr1 26246678 26246941 -216417412 + AluJb SINE Alu 23 285 -27 2007 151 0 3 chr1 26246951 26247255 -216417098 + AluSx SINE Alu 1 303 -9 342 138 0 0 chr1 26247799 26247857 -216416496 + (TG)n Simple_repeat Simple_repeat 2 59 0 2243 129 0 0 chr1 26247890 26248193 -216416160 - AluSx SINE Alu -9 303 1 2442 79 0 0 chr1 26248201 26248505 -216415848 - AluY SINE Alu -7 304 1 1940 156 3 3 chr1 26248515 26248803 -216415550 - AluJb SINE Alu -24 288 1 483 283 133 12 chr1 26248933 26249099 -216415254 + MIR SINE MIR 61 246 -16 583 239 7 27 chr1 26249299 26249483 -216414870 - L1ME3 LINE L1 -75 6089 5913 2385 101 3 0 chr1 26249586 26249892 -216414461 + AluSp SINE Alu 1 307 -6 496 115 81 0 chr1 26250062 26250149 -216414204 - MER53 DNA DNA 0 189 96 484 143 48 0 chr1 26250074 26250158 -216414195 + MER53 DNA DNA 23 110 -79 * 655 256 24 0 chr1 26250570 26250738 -216413615 + MIR SINE MIR 91 262 0 235 302 21 0 chr1 26250838 26250934 -216413419 - MIR SINE MIR -55 153 56 410 311 0 8 chr1 26251169 26251291 -216413062 + MIR SINE MIR 2 122 -140 * 910 302 36 4 chr1 26251290 26251476 -216412877 - MIR SINE MIR -1 261 64 2321 116 0 0 chr1 26251476 26251777 -216412576 - AluSq SINE Alu -12 301 1 910 302 36 4 chr1 26251777 26251838 -216412515 - MIR SINE MIR -198 64 6 1595 126 133 19 chr1 26252017 26252280 -216412073 - AluSg SINE Alu -17 293 1 1960 94 0 8 chr1 26252424 26252706 -216411647 + AluSg SINE Alu 35 310 0 338 286 119 0 chr1 26252754 26252880 -216411473 + MIR SINE MIR 119 259 -3 488 288 22 14 chr1 26253795 26253934 -216410419 + MIR3 SINE MIR 55 194 -14 1916 147 3 10 chr1 26254011 26254323 -216410030 + AluJo SINE Alu 1 310 -2 2233 90 3 0 chr1 26254323 26254613 -216409740 + AluSx SINE Alu 1 291 -21 728 234 137 5 chr1 26255257 26255462 -216408891 - MIR SINE MIR -29 233 2 391 338 14 14 chr1 26255548 26255690 -216408663 + MIR SINE MIR 111 252 -10 189 280 40 0 chr1 26255701 26255751 -216408602 + MIR SINE MIR 70 121 -87 788 186 38 43 chr1 26256341 26256558 -216407795 + MLT1H LTR MaLR 322 548 -1 200 261 234 40 chr1 26256576 26256802 -216407551 + L2 LINE L2 2316 2585 -729 310 260 55 24 chr1 26256822 26256949 -216407404 + Charlie7 DNA MER1_type 1 131 -2481 2371 55 10 0 chr1 26256951 26257242 -216407111 + AluSp SINE Alu 1 294 -19 561 244 125 6 chr1 26257259 26257419 -216406934 - MIR SINE MIR -48 214 36 1091 168 5 0 chr1 26257419 26257604 -216406749 - MER5A DNA MER1_type 0 189 4 2336 93 0 0 chr1 26257832 26258143 -216406210 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 26258149 26258171 -216406182 + AT_rich Low_complexity Low_complexity 1 22 0 1294 169 0 67 chr1 26258200 26258484 -216405869 - AluJo SINE Alu -15 297 33 561 260 74 71 chr1 26258498 26258863 -216405490 - L1MC5 LINE L1 -30 7931 7566 1077 213 59 39 chr1 26258864 26259202 -216405151 + Charlie7 DNA MER1_type 303 647 -1965 250 211 143 8 chr1 26259229 26259362 -216404991 + Charlie7 DNA MER1_type 2415 2565 -47 2014 132 6 3 chr1 26259597 26259908 -216404445 - AluSx SINE Alu 0 312 1 353 148 0 0 chr1 26259940 26260001 -216404352 - AluSx SINE Alu 0 300 240 1290 121 0 0 chr1 26260001 26260183 -216404170 - AluSx SINE Alu -130 182 1 213 314 45 58 chr1 26260263 26260419 -216403934 + L2 LINE L2 2938 3091 -181 255 308 84 19 chr1 26260461 26260568 -216403785 + MIR SINE MIR 3 116 -146 1082 212 74 0 chr1 26260584 26260815 -216403538 + MIR SINE MIR 9 256 -6 250 147 29 0 chr1 26260859 26260927 -216403426 + (AATTG)n Simple_repeat Simple_repeat 4 73 0 180 0 0 0 chr1 26261403 26261423 -216402930 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 1782 152 0 13 chr1 26261476 26261778 -216402575 + AluJo SINE Alu 1 298 -14 298 50 0 0 chr1 26261846 26261886 -216402467 + L1PB4 LINE L1 6117 6156 0 235 255 38 75 chr1 26262680 26262786 -216401567 - MIR SINE MIR -55 207 106 287 192 14 0 chr1 26263318 26263391 -216400962 + GA-rich Low_complexity Low_complexity 3 76 0 348 282 161 13 chr1 26263441 26263590 -216400763 + L3 LINE CR1 1288 1458 -119 305 275 110 37 chr1 26263613 26263722 -216400631 - MIR3 SINE MIR -18 190 74 382 248 129 73 chr1 26263736 26264039 -216400314 + L1ME4a LINE L1 5696 6015 -106 994 242 94 0 chr1 26264055 26264278 -216400075 - MIR SINE MIR -6 256 13 1976 106 71 31 chr1 26264294 26264616 -216399737 - MER1B DNA MER1_type 0 337 3 192 279 0 0 chr1 26264620 26264663 -216399690 + L3 LINE CR1 1528 1570 -7 244 254 35 35 chr1 26265338 26265452 -216398901 + L1MC4 LINE L1 7928 8041 -1 1078 211 31 123 chr1 26265473 26265519 -216398834 + L2 LINE L2 2937 2986 -327 2381 150 0 0 chr1 26265519 26265885 -216398468 + MER47A DNA MER2_type 1 366 0 1078 211 31 123 chr1 26265885 26265964 -216398389 + L2 LINE L2 2986 3071 -242 2087 128 0 0 chr1 26265964 26266268 -216398085 - AluSq SINE Alu -9 304 1 1078 211 31 123 chr1 26266268 26266409 -216397944 + L2 LINE L2 3071 3155 -158 1969 128 10 0 chr1 26266409 26266697 -216397656 - AluSx SINE Alu -21 291 1 1078 211 31 123 chr1 26266697 26266841 -216397512 + L2 LINE L2 3155 3311 -2 677 298 87 8 chr1 26266836 26267078 -216397275 - MIR SINE MIR 0 262 2 * 189 307 68 11 chr1 26267083 26267171 -216397182 + MIR SINE MIR 96 188 -74 716 240 113 9 chr1 26267510 26267731 -216396622 + MIR SINE MIR 18 261 -1 375 241 119 40 chr1 26267750 26268003 -216396350 - L1ME4a LINE L1 -26 6095 5823 968 207 77 9 chr1 26268004 26268226 -216396127 + MIR SINE MIR 5 241 -21 2137 118 0 0 chr1 26268355 26268651 -216395702 + AluSx SINE Alu 1 296 -16 198 182 159 0 chr1 26268949 26268993 -216395360 + MIR SINE MIR 93 143 -119 270 171 214 0 chr1 26269339 26269409 -216394944 + MIR SINE MIR 64 148 -114 219 326 41 31 chr1 26269452 26269550 -216394803 - MIR SINE MIR -77 131 33 267 221 162 0 chr1 26270240 26270308 -216394045 - MIR SINE MIR -134 128 50 198 0 0 0 chr1 26270802 26270824 -216393529 + (T)n Simple_repeat Simple_repeat 1 22 0 1582 52 0 5 chr1 26270839 26271033 -216393320 - AluY SINE Alu -118 193 1 371 293 101 72 chr1 26271113 26271431 -216392922 + L1ME4a LINE L1 5794 6120 -1 351 298 0 0 chr1 26271465 26271559 -216392794 + MIR SINE MIR 156 249 -13 204 40 0 0 chr1 26271626 26271651 -216392702 + (CCCGG)n Simple_repeat Simple_repeat 1 25 0 207 151 38 19 chr1 26272600 26272653 -216391700 + (CGG)n Simple_repeat Simple_repeat 3 56 0 41 82 0 0 chr1 26272888 26272985 -216391368 + GC_rich Low_complexity Low_complexity 1 97 0 21 36 0 0 chr1 26273017 26273045 -216391308 + GC_rich Low_complexity Low_complexity 1 28 0 338 210 111 0 chr1 26274016 26274097 -216390256 - L2 LINE L2 0 3313 3224 256 246 104 82 chr1 26275217 26275351 -216389002 + MIR3 SINE MIR 9 145 -63 203 267 200 11 chr1 26275976 26276066 -216388287 - L2 LINE L2 -19 3294 3188 1442 184 0 70 chr1 26278717 26279033 -216385320 - AluJo SINE Alu -14 298 5 1806 146 24 3 chr1 26279225 26279513 -216384840 + AluJo SINE Alu 1 294 -18 275 204 0 0 chr1 26279539 26279583 -216384770 - AluJ/monomer SINE Alu -264 44 1 292 276 142 0 chr1 26279929 26280063 -216384290 - MIR SINE MIR 0 262 110 2134 104 19 7 chr1 26280201 26280509 -216383844 + AluSx SINE Alu 1 312 0 322 94 0 94 chr1 26280696 26280760 -216383593 - L1MD3 LINE L1 -10 7985 7928 189 0 0 0 chr1 26280793 26280814 -216383539 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 991 185 0 0 chr1 26280816 26281000 -216383353 + AluJo SINE Alu 123 306 -6 641 145 23 87 chr1 26281271 26281317 -216383036 - Charlie1 DNA MER1_type -11 2750 2703 2212 95 10 0 chr1 26281317 26281612 -216382741 + AluSp SINE Alu 1 298 -15 641 145 23 87 chr1 26281612 26281686 -216382667 - Charlie1 DNA MER1_type -58 2703 2642 1631 173 0 55 chr1 26281686 26282016 -216382337 + AluJo SINE Alu 1 312 0 641 145 23 87 chr1 26282016 26282066 -216382287 - Charlie1 DNA MER1_type -119 2642 2590 2291 96 3 0 chr1 26282068 26282371 -216381982 + AluSx SINE Alu 2 305 -7 404 165 13 0 chr1 26282379 26282458 -216381895 - Charlie1 DNA MER1_type -228 2533 2454 294 270 122 78 chr1 26282764 26282776 -216381577 - L2 LINE L2 0 3313 3303 2138 80 28 7 chr1 26282776 26283065 -216381288 - AluSq SINE Alu -18 295 1 294 270 122 78 chr1 26283065 26283348 -216381005 - L2 LINE L2 -10 3303 3005 331 286 231 7 chr1 26283596 26283743 -216380610 - MER5A DNA MER1_type 0 189 10 705 147 0 77 chr1 26285519 26285550 -216378803 - FLAM_A SINE Alu -172 139 107 1923 122 0 24 chr1 26285550 26285863 -216378490 + AluSx SINE Alu 1 306 0 705 147 0 77 chr1 26285863 26285972 -216378381 - FLAM_A SINE Alu -204 107 8 1762 163 51 0 chr1 26286157 26286452 -216377901 - AluJb SINE Alu -2 310 1 1487 160 28 18 chr1 26286613 26286895 -216377458 + AluJo SINE Alu 14 298 -14 318 309 109 39 chr1 26287104 26287334 -216377019 - L1M2 LINE L1 -4974 1875 1630 21 36 0 0 chr1 26288310 26288338 -216376015 + AT_rich Low_complexity Low_complexity 1 28 0 2595 172 38 16 chr1 26288883 26289388 -216374965 - Charlie1b DNA MER1_type -7 516 1 2102 131 0 0 chr1 26289763 26290068 -216374285 + AluY SINE Alu 1 305 -6 685 319 66 4 chr1 26290848 26291074 -216373279 - L3 LINE CR1 -7 1570 1331 700 108 17 42 chr1 26291104 26291224 -216373129 - FLAM_A SINE Alu -1 141 25 2209 104 0 16 chr1 26291317 26291634 -216372719 + AluSx SINE Alu 1 312 0 599 274 246 6 chr1 26291667 26291984 -216372369 - L3 LINE CR1 -238 1339 947 297 236 38 57 chr1 26292402 26292508 -216371845 + MIR3 SINE MIR 102 205 -3 2045 104 3 77 chr1 26293205 26293541 -216370812 + AluSx SINE Alu 1 311 -1 292 254 164 27 chr1 26293683 26293793 -216370560 + MIR3 SINE MIR 77 201 -7 845 251 150 36 chr1 26294094 26294276 -216370077 - L1MC4a LINE L1 -718 5615 5455 2287 97 0 0 chr1 26294276 26294575 -216369778 - AluSg SINE Alu -11 299 1 2348 73 3 0 chr1 26294585 26294885 -216369468 - AluSp SINE Alu -12 301 1 845 251 150 36 chr1 26294885 26294962 -216369391 - L1MC4a LINE L1 -885 5448 5381 2393 66 7 0 chr1 26294962 26295265 -216369088 + AluY SINE Alu 1 305 -6 845 251 150 36 chr1 26295265 26295655 -216368698 - L1MC4a LINE L1 -952 5381 5191 30 45 0 0 chr1 26296929 26296973 -216367380 + AT_rich Low_complexity Low_complexity 1 44 0 3259 249 150 26 chr1 26296973 26298107 -216366246 + L2 LINE L2 1512 2786 -528 689 194 73 11 chr1 26298166 26298355 -216365998 - MIR SINE MIR -60 202 5 471 258 17 0 chr1 26298361 26298481 -216365872 + MIR3 SINE MIR 50 171 -37 2167 112 0 10 chr1 26298822 26299135 -216365218 - AluSq SINE Alu -2 311 2 321 89 0 0 chr1 26299135 26299180 -216365173 + (TCTG)n Simple_repeat Simple_repeat 3 47 0 263 182 0 0 chr1 26299190 26299234 -216365119 - FLAM SINE Alu -9 124 81 939 146 19 78 chr1 26299235 26299440 -216364913 - AluJo SINE Alu -98 214 22 333 47 0 0 chr1 26299730 26299773 -216364580 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 278 243 57 0 chr1 26299884 26299954 -216364399 + MIR SINE MIR 65 138 -124 320 278 172 18 chr1 26300158 26300325 -216364028 + MIR3 SINE MIR 9 193 -63 205 219 94 31 chr1 26300585 26300649 -216363704 - L2 LINE L2 -189 3083 3016 220 264 104 100 chr1 26300759 26300829 -216363524 - MIR SINE MIR -13 249 181 1812 158 0 0 chr1 26300829 26301127 -216363226 + AluSx SINE Alu 1 298 -14 220 264 104 100 chr1 26301127 26301287 -216363066 - MIR SINE MIR -81 181 18 645 293 71 10 chr1 26301564 26301762 -216362591 + MIR SINE MIR 1 210 -52 1046 169 0 16 chr1 26301844 26302028 -216362325 + AluJo SINE Alu 1 181 -131 1589 166 4 4 chr1 26302028 26302293 -216362060 + AluJb SINE Alu 23 287 -25 1698 173 0 3 chr1 26302301 26302601 -216361752 + AluSx SINE Alu 1 299 -13 183 156 0 0 chr1 26303145 26303177 -216361176 + (TG)n Simple_repeat Simple_repeat 2 33 0 2202 129 3 0 chr1 26303210 26303512 -216360841 - AluSx SINE Alu -9 303 1 2561 57 0 0 chr1 26303520 26303819 -216360534 - AluY SINE Alu -12 299 1 1903 167 3 3 chr1 26303829 26304117 -216360236 - AluJb SINE Alu -24 288 1 467 289 133 12 chr1 26304247 26304413 -216359940 + MIR SINE MIR 61 246 -16 596 240 6 27 chr1 26304598 26304783 -216359570 - L1ME3 LINE L1 -67 6099 5915 2420 92 3 0 chr1 26304890 26305194 -216359159 + AluSp SINE Alu 1 305 -8 469 105 93 0 chr1 26305364 26305450 -216358903 - MER53 DNA DNA 0 189 96 459 133 60 0 chr1 26305376 26305459 -216358894 + MER53 DNA DNA 23 110 -79 * 644 262 24 0 chr1 26305871 26306039 -216358314 + MIR SINE MIR 91 262 0 247 292 21 0 chr1 26306139 26306235 -216358118 - MIR SINE MIR -55 153 56 449 295 0 8 chr1 26306470 26306592 -216357761 + MIR SINE MIR 2 122 -140 * 787 244 6 0 chr1 26306591 26306759 -216357594 - MIR SINE MIR -1 261 93 2029 133 11 0 chr1 26306777 26307063 -216357290 - AluSq SINE Alu -13 300 12 1637 111 134 19 chr1 26307189 26307451 -216356902 - AluSg SINE Alu -18 292 1 1951 110 7 7 chr1 26307595 26307867 -216356486 + AluSg SINE Alu 35 306 -4 392 255 210 0 chr1 26307884 26308041 -216356312 + MIR SINE MIR 70 259 -3 503 281 22 14 chr1 26308956 26309095 -216355258 + MIR3 SINE MIR 55 194 -14 1969 127 3 48 chr1 26309172 26309486 -216354867 + AluJo SINE Alu 1 300 -12 2418 98 0 0 chr1 26309486 26309783 -216354570 + AluSx SINE Alu 1 297 -15 759 229 137 5 chr1 26310425 26310630 -216353723 - MIR SINE MIR -29 233 2 399 338 14 14 chr1 26310716 26310858 -216353495 + MIR SINE MIR 111 252 -10 195 280 40 0 chr1 26310869 26310919 -216353434 + MIR SINE MIR 70 121 -87 720 192 38 43 chr1 26311509 26311726 -216352627 + MLT1H LTR MaLR 322 548 -1 213 249 240 40 chr1 26311744 26311969 -216352384 + L2 LINE L2 2316 2585 -729 288 276 47 16 chr1 26311989 26312116 -216352237 + Charlie7 DNA MER1_type 1 131 -2481 2437 62 10 0 chr1 26312118 26312407 -216351946 + AluSp SINE Alu 1 292 -21 559 244 125 6 chr1 26312424 26312584 -216351769 - MIR SINE MIR -48 214 36 1071 178 5 0 chr1 26312584 26312769 -216351584 - MER5A DNA MER1_type 0 189 4 2424 93 0 3 chr1 26312996 26313307 -216351046 - AluY SINE Alu -1 310 1 22 0 0 0 chr1 26313313 26313335 -216351018 + AT_rich Low_complexity Low_complexity 1 22 0 1408 170 0 64 chr1 26313364 26313646 -216350707 - AluJo SINE Alu -16 296 33 471 266 74 71 chr1 26313661 26314011 -216350342 - L1MC5 LINE L1 -30 7931 7581 999 216 59 22 chr1 26314025 26314345 -216350008 + Charlie7 DNA MER1_type 303 634 -1978 240 221 69 28 chr1 26314391 26314536 -216349817 + Charlie7 DNA MER1_type 2415 2565 -47 2173 135 6 3 chr1 26314771 26315082 -216349271 - AluSx SINE Alu 0 312 1 327 164 0 0 chr1 26315121 26315182 -216349171 - AluSx SINE Alu 0 301 241 1275 137 0 0 chr1 26315182 26315364 -216348989 - AluSx SINE Alu -130 182 1 214 329 66 13 chr1 26315438 26315590 -216348763 + L2 LINE L2 2932 3091 -181 225 314 35 23 chr1 26315632 26315718 -216348635 + MIR SINE MIR 3 89 -173 1043 225 72 0 chr1 26315753 26315989 -216348364 + MIR SINE MIR 9 261 -1 229 162 29 0 chr1 26316028 26316096 -216348257 + (AATTG)n Simple_repeat Simple_repeat 4 73 0 180 0 0 0 chr1 26316572 26316592 -216347761 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 1909 150 0 26 chr1 26316645 26316951 -216347402 + AluJo SINE Alu 1 298 -14 287 87 0 0 chr1 26317013 26317059 -216347294 + L1PB4 LINE L1 6111 6156 0 224 264 38 75 chr1 26317854 26317960 -216346393 - MIR SINE MIR -55 207 106 236 222 14 0 chr1 26318489 26318561 -216345792 + GA-rich Low_complexity Low_complexity 4 76 0 337 289 211 7 chr1 26318611 26318753 -216345600 + L3 LINE CR1 1288 1458 -119 309 287 104 35 chr1 26318776 26318891 -216345462 - MIR3 SINE MIR -18 190 68 373 243 113 75 chr1 26318899 26319191 -216345162 + L1ME4a LINE L1 5696 5998 -123 997 239 99 0 chr1 26319218 26319440 -216344913 - MIR SINE MIR -6 256 13 2036 106 71 31 chr1 26319456 26319778 -216344575 - MER1B DNA MER1_type 0 337 3 188 279 0 0 chr1 26319782 26319825 -216344528 + L3 LINE CR1 1528 1570 -7 235 246 35 35 chr1 26320500 26320614 -216343739 + L1MC4 LINE L1 7928 8041 -1 262 167 0 21 chr1 26320632 26320680 -216343673 + L2 LINE L2 2935 2981 -332 2018 138 29 0 chr1 26320680 26321029 -216343324 + MER47A DNA MER2_type 1 359 -7 782 218 36 141 chr1 26321037 26321112 -216343241 + L2 LINE L2 2988 3069 -244 2308 117 0 0 chr1 26321112 26321411 -216342942 - AluSq SINE Alu -14 299 1 782 218 36 141 chr1 26321411 26321552 -216342801 + L2 LINE L2 3069 3153 -160 2126 122 10 0 chr1 26321552 26321840 -216342513 - AluSx SINE Alu -21 291 1 782 218 36 141 chr1 26321840 26321984 -216342369 + L2 LINE L2 3153 3311 -2 954 160 61 28 chr1 26322656 26322868 -216341485 - MER20 DNA MER1_type 0 219 1 1426 151 57 21 chr1 26323979 26324311 -216340042 - L1MC3 LINE L1 -74 7711 7368 1779 166 53 7 chr1 26324321 26324605 -216339748 + AluSx SINE Alu 1 297 -15 537 277 133 41 chr1 26324621 26324851 -216339502 + L2 LINE L2 2513 2720 -593 12094 85 8 3 chr1 26324851 26326422 -216337931 + THE1B-int LTR MaLR 2 1580 0 2159 97 100 29 chr1 26326422 26326762 -216337591 + THE1B LTR MaLR 1 364 0 537 277 133 41 chr1 26326762 26327072 -216337281 + L2 LINE L2 2719 3104 -209 2275 187 67 41 chr1 26327082 26327617 -216336736 + MLT2B3 LTR ERVL 1 549 -5 640 223 149 0 chr1 26327625 26327800 -216336553 + L2 LINE L2 3113 3313 0 211 376 40 10 chr1 26327905 26328006 -216336347 + L2 LINE L2 3193 3296 -17 2244 124 0 0 chr1 26328065 26328371 -216335982 + AluSx SINE Alu 1 306 -6 2563 72 0 0 chr1 26328374 26328678 -216335675 + AluY SINE Alu 2 305 -6 1710 161 48 65 chr1 26328808 26328977 -216335376 + MLT1B LTR MaLR 1 171 -219 2430 73 0 13 chr1 26328977 26329277 -216335076 + AluSg SINE Alu 1 296 -14 1710 161 48 65 chr1 26329277 26329504 -216334849 + MLT1B LTR MaLR 171 390 0 2202 110 7 17 chr1 26330273 26330574 -216333779 + AluSc SINE Alu 1 298 -11 2217 110 10 7 chr1 26330684 26330984 -216333369 + AluSx SINE Alu 1 301 -11 345 217 0 0 chr1 26331019 26331079 -216333274 - Tigger3(Golem) DNA MER2_type -2969 60 1 184 314 0 0 chr1 26331133 26331184 -216333169 - MIR SINE MIR -188 74 24 2124 131 3 0 chr1 26331599 26331896 -216332457 + AluSg SINE Alu 1 298 -12 2036 137 3 35 chr1 26332166 26332479 -216331874 + AluJb SINE Alu 1 303 -9 257 280 128 55 chr1 26332666 26332884 -216331469 - L2 LINE L2 0 3313 3080 1918 148 0 26 chr1 26333312 26333617 -216330736 + AluJb SINE Alu 1 297 -15 1530 168 37 37 chr1 26333632 26333929 -216330424 + AluJo SINE Alu 7 303 -9 3247 114 85 0 chr1 26334086 26334568 -216329785 + MER1A DNA MER1_type 5 527 0 2078 122 0 0 chr1 26335343 26335642 -216328711 + AluSg SINE Alu 1 299 0 256 232 16 96 chr1 26336349 26336417 -216327936 + L1MC/D LINE L1 5700 5755 -2053 2271 77 43 0 chr1 26336417 26336716 -216327637 + AluSp SINE Alu 1 312 -1 256 232 16 96 chr1 26336716 26336772 -216327581 + L1MC/D LINE L1 5755 5814 -1994 780 146 0 0 chr1 26336874 26336984 -216327369 + AluSq/x SINE Alu 6 115 -198 1499 220 63 35 chr1 26336984 26337242 -216327111 + LTR66 LTR ERVL 1 275 -335 2435 83 0 3 chr1 26337242 26337544 -216326809 + AluSq SINE Alu 1 301 -12 1499 220 63 35 chr1 26337544 26337681 -216326672 + LTR66 LTR ERVL 275 407 -203 1375 159 9 120 chr1 26337850 26338184 -216326169 + AluJb SINE Alu 2 298 -4 2365 92 7 0 chr1 26338408 26338712 -216325641 + AluSp SINE Alu 1 306 -7 1040 198 94 51 chr1 26338729 26339036 -216325317 - MLT1E2 LTR MaLR 0 626 334 2378 96 0 6 chr1 26339036 26339348 -216325005 - AluSg SINE Alu 0 310 1 1040 198 94 51 chr1 26339348 26339578 -216324775 - MLT1E2 LTR MaLR -292 334 1 2385 173 118 25 chr1 26339628 26340144 -216324209 + LTR6A LTR ERV1 1 564 0 2078 119 7 14 chr1 26340436 26340731 -216323622 + AluSx SINE Alu 2 294 -18 2236 124 0 0 chr1 26340904 26341210 -216323143 - AluSq SINE Alu -7 306 1 1224 181 165 0 chr1 26341467 26341727 -216322626 + AluSx SINE Alu 1 303 -9 811 133 33 40 chr1 26344025 26344176 -216320177 + AluSq/x SINE Alu 1 150 -163 254 218 57 81 chr1 26344511 26344635 -216319718 + MER8 DNA MER2_type 117 237 -2 1605 159 91 0 chr1 26345116 26345380 -216318973 + AluJb SINE Alu 1 288 -24 271 59 10 149 chr1 26345942 26346017 -216318336 + Alu SINE Alu 247 294 -8 2200 89 17 14 chr1 26346968 26347261 -216317092 - AluSg SINE Alu -15 295 2 331 175 32 16 chr1 26347938 26348001 -216316352 + MER5A DNA MER1_type 46 109 -80 2034 64 16 4 chr1 26348204 26348453 -216315900 - AluY SINE Alu -59 252 1 2135 120 0 0 chr1 26348513 26348805 -216315548 - AluSx SINE Alu -20 292 1 2124 85 89 0 chr1 26348824 26349105 -216315248 - AluSp SINE Alu -7 306 1 971 192 153 31 chr1 26349196 26349457 -216314896 - AluJo SINE Alu -9 293 1 287 129 129 14 chr1 26350354 26350424 -216313929 + AluJ/FRAM SINE Alu 215 292 -10 2173 99 7 0 chr1 26350637 26350921 -216313432 - AluSx SINE Alu -26 286 1 1745 145 19 62 chr1 26350978 26351302 -216313051 + AluJo SINE Alu 1 310 -2 606 215 0 39 chr1 26351409 26351539 -216312814 + FLAM_C SINE Alu 3 127 -6 1062 286 102 7 chr1 26351622 26351795 -216312558 - LTR33 LTR ERVL -47 474 319 1491 94 11 0 chr1 26351795 26351986 -216312367 + AluSq SINE Alu 1 193 -120 1062 286 102 7 chr1 26351986 26352245 -216312108 - LTR33 LTR ERVL -202 319 1 926 219 325 17 chr1 26352353 26352843 -216311510 + MLT1G1 LTR MaLR 1 590 0 2160 129 0 3 chr1 26352854 26353165 -216311188 - AluSx SINE Alu -2 310 1 1828 136 81 0 chr1 26353424 26353697 -216310656 - AluJb SINE Alu -12 300 6 2285 63 56 0 chr1 26353797 26354081 -216310272 - AluY SINE Alu -11 300 1 22 0 0 0 chr1 26354139 26354161 -216310192 + AT_rich Low_complexity Low_complexity 1 22 0 2293 90 0 29 chr1 26354173 26354485 -216309868 - AluSq SINE Alu -10 303 1 1890 102 0 0 chr1 26354546 26354791 -216309562 - AluSx SINE Alu -19 293 49 882 107 101 13 chr1 26354803 26354962 -216309391 - MER4A LTR ERV1 -489 175 3 683 275 25 10 chr1 26354965 26355165 -216309188 - L1MC/D LINE L1 -2144 5664 5462 490 277 140 60 chr1 26355192 26355407 -216308946 - L1MC/D LINE L1 -1527 4619 4366 2577 69 0 0 chr1 26355407 26355712 -216308641 - AluY SINE Alu -6 305 1 490 277 140 60 chr1 26355712 26355832 -216308521 - L1MC/D LINE L1 -1780 4366 4257 23 0 0 0 chr1 26356023 26356046 -216308307 + AT_rich Low_complexity Low_complexity 1 23 0 2348 102 0 3 chr1 26356046 26356349 -216308004 + AluSg SINE Alu 1 302 -8 791 173 0 0 chr1 26356353 26356486 -216307867 - FLAM_C SINE Alu 0 133 1 1852 188 68 113 chr1 26356576 26357278 -216307075 - LTR8A LTR ERV1 -15 712 42 362 288 6 56 chr1 26358107 26358267 -216306086 - MER5B DNA MER1_type 0 178 27 180 268 28 70 chr1 26358262 26358333 -216306020 - MIR3 SINE MIR -54 154 87 * 234 119 119 34 chr1 26358732 26358791 -216305562 + MER90 LTR ERV1 2 65 -549 1120 232 87 32 chr1 26358828 26358971 -216305382 + MER90 LTR ERV1 221 355 -259 2327 56 52 0 chr1 26358971 26359257 -216305096 + AluY SINE Alu 1 301 -10 1120 232 87 32 chr1 26359257 26359483 -216304870 + MER90 LTR ERV1 355 610 -4 1983 147 3 7 chr1 26359959 26360258 -216304095 + AluSx SINE Alu 1 298 -14 2373 104 0 0 chr1 26360285 26360584 -216303769 - AluSx SINE Alu -13 299 1 211 411 0 0 chr1 26360771 26360844 -216303509 + L2 LINE L2 2702 2774 -540 935 300 24 8 chr1 26361135 26361382 -216302971 + MIR SINE MIR 1 251 -11 2159 106 0 17 chr1 26361441 26361734 -216302619 + AluSx SINE Alu 1 288 -24 1020 146 146 38 chr1 26362251 26362464 -216301889 + MER46A DNA MER2_type 1 236 0 2260 103 0 22 chr1 26362765 26363076 -216301277 - AluSx SINE Alu -8 304 1 1647 191 14 0 chr1 26363081 26363374 -216300979 - AluJo SINE Alu -15 297 1 760 189 8 0 chr1 26363546 26363678 -216300675 - MER58B DNA MER1_type -2 339 207 467 269 47 13 chr1 26363748 26363897 -216300456 + MIR3 SINE MIR 40 193 -15 2215 106 33 7 chr1 26363900 26364203 -216300150 - AluSx SINE Alu -1 311 1 2479 75 0 0 chr1 26364206 26364499 -216299854 - AluSg SINE Alu -17 293 1 23 55 0 18 chr1 26364511 26364538 -216299815 + AT_rich Low_complexity Low_complexity 1 27 -27 2125 133 0 0 chr1 26364538 26364831 -216299522 - AluSx SINE Alu -19 293 1 23 55 0 18 chr1 26364831 26364858 -216299495 + AT_rich Low_complexity Low_complexity 27 54 0 265 181 0 121 chr1 26365483 26365519 -216298834 + MIR SINE MIR 190 212 -50 2047 151 0 7 chr1 26365519 26365817 -216298536 + AluJb SINE Alu 1 296 -16 265 181 0 121 chr1 26365817 26365863 -216298490 + MIR SINE MIR 212 262 0 2211 126 0 0 chr1 26365871 26366165 -216298188 - AluSx SINE Alu -18 294 1 620 124 0 170 chr1 26366217 26366370 -216297983 - FLAM_C SINE Alu -6 127 1 703 186 85 21 chr1 26367531 26367719 -216296634 - L1MC5 LINE L1 -93 7868 7669 2090 140 0 3 chr1 26367853 26368145 -216296208 + AluSx SINE Alu 1 291 -21 214 264 0 0 chr1 26368224 26368277 -216296076 + T-rich Low_complexity Low_complexity 3 55 0 854 121 38 8 chr1 26368316 26368448 -216295905 - AluJo SINE Alu -176 136 1 303 337 20 20 chr1 26368593 26368694 -216295659 + L1 LINE L1 3729 3829 -2317 1878 99 8 0 chr1 26368727 26368970 -216295383 - AluSg SINE Alu -22 288 44 234 349 130 9 chr1 26369070 26369285 -216295068 + MLT1L LTR MaLR 195 435 -180 437 106 0 160 chr1 26369364 26369405 -216294948 + MADE1 DNA Mariner 1 20 -60 2200 117 3 0 chr1 26369405 26369704 -216294649 - AluSx SINE Alu -11 301 2 437 106 0 160 chr1 26369704 26369756 -216294597 + MADE1 DNA Mariner 20 79 -1 377 331 42 36 chr1 26369811 26369977 -216294376 + L1 LINE L1 4315 4481 -1665 2160 110 10 13 chr1 26369985 26370285 -216294068 + AluSx SINE Alu 1 299 -13 1291 253 96 49 chr1 26370292 26370802 -216293551 + L1MEc LINE L1 29 562 -5834 276 254 15 0 chr1 26370805 26370872 -216293481 + MIR SINE MIR 145 212 -50 1314 245 83 10 chr1 26370927 26371514 -216292839 + L1MEc LINE L1 565 1218 -5178 401 274 72 26 chr1 26371554 26371707 -216292646 + MER113 DNA MER1_type? 251 410 -111 334 301 18 9 chr1 26372396 26372509 -216291844 + MIR SINE MIR 141 254 -8 747 247 59 36 chr1 26372586 26372677 -216291676 + MIR SINE MIR 15 102 -160 1896 178 42 29 chr1 26372677 26373060 -216291293 - MLT1B LTR MaLR -2 388 1 747 247 59 36 chr1 26373060 26373187 -216291166 + MIR SINE MIR 102 238 -24 2253 109 0 16 chr1 26373200 26373513 -216290840 - AluSg SINE Alu -1 309 2 2035 138 10 0 chr1 26374166 26374457 -216289896 + AluSx SINE Alu 1 294 -18 2133 94 3 39 chr1 26374824 26375133 -216289220 - AluSx SINE Alu -2 310 13 2866 7 0 3 chr1 26375335 26375642 -216288711 - AluYa5 SINE Alu -5 306 1 1560 179 47 24 chr1 26375646 26375943 -216288410 - AluJo SINE Alu -8 304 1 2255 122 0 0 chr1 26375952 26376248 -216288105 - AluSx SINE Alu -16 296 1 428 262 131 6 chr1 26376480 26376648 -216287705 - L1ME3 LINE L1 -7 6155 5967 1885 134 76 4 chr1 26376648 26376925 -216287428 - AluSx SINE Alu -15 297 1 683 144 25 25 chr1 26376944 26377062 -216287291 - FLAM_A SINE Alu -6 136 19 582 203 91 0 chr1 26377081 26377224 -216287129 - L1ME3 LINE L1 -173 5989 5834 199 245 0 19 chr1 26377224 26377277 -216287076 + L3 LINE CR1 1525 1576 -1 2472 96 0 0 chr1 26377558 26377861 -216286492 + AluSq SINE Alu 1 303 -10 268 263 70 26 chr1 26377861 26377975 -216286378 + MLT1G1-int LTR MaLR 1253 1371 0 271 284 125 0 chr1 26377975 26378063 -216286290 + MLT1G1 LTR MaLR 1 99 -496 2078 147 3 0 chr1 26378102 26378394 -216285959 + AluJb SINE Alu 1 293 -19 415 226 39 0 chr1 26378412 26378514 -216285839 - MLT1C LTR MaLR -25 442 337 2009 152 0 34 chr1 26378514 26378900 -216285453 - AluJb SINE Alu 0 375 1 323 202 71 30 chr1 26378900 26378999 -216285354 + MER21B LTR ERV1 4 106 -757 * 379 237 0 0 chr1 26378997 26379073 -216285280 + MER21B LTR ERV1 19 94 -769 * 3292 173 59 54 chr1 26379071 26379816 -216284537 + MER21B LTR ERV1 43 791 -72 1954 131 17 77 chr1 26379833 26379868 -216284485 + L1MB7 LINE L1 5797 5833 -351 2343 74 3 0 chr1 26379868 26380184 -216284169 + AluSp SINE Alu 1 317 0 1954 131 17 77 chr1 26380184 26380497 -216283856 + L1MB7 LINE L1 5833 6121 -63 2615 53 0 3 chr1 26380497 26380797 -216283556 - AluY SINE Alu -12 299 1 1954 131 17 77 chr1 26380797 26380850 -216283503 + L1MB7 LINE L1 6121 6176 -8 452 222 48 87 chr1 26381039 26381246 -216283107 - L2 LINE L2 -2 3311 3113 351 192 0 14 chr1 26381248 26381321 -216283032 - L2 LINE L2 -334 2938 2867 266 75 0 0 chr1 26381507 26381547 -216282806 + LTR5 LTR ERVK 766 805 -164 21 36 0 0 chr1 26381547 26381575 -216282778 + AT_rich Low_complexity Low_complexity 1 28 0 397 308 154 4 chr1 26381870 26382104 -216282249 - MLT1L LTR MaLR -5 610 342 2221 120 0 10 chr1 26382390 26382698 -216281655 - AluSx SINE Alu -7 305 1 228 161 36 18 chr1 26382740 26382796 -216281557 - MLT1I LTR MaLR -285 124 68 935 249 32 16 chr1 26382944 26383141 -216281212 + MIR SINE MIR 5 208 -54 2371 94 3 0 chr1 26383141 26383440 -216280913 + AluSx SINE Alu 1 300 -12 935 249 32 16 chr1 26383440 26383495 -216280858 + MIR SINE MIR 208 261 -1 739 153 73 0 chr1 26385074 26385198 -216279155 + MER5A DNA MER1_type 1 133 -56 1304 106 0 6 chr1 26385199 26385379 -216278974 - AluSg/x SINE Alu -5 305 127 2127 81 81 3 chr1 26385381 26385666 -216278687 - AluSc SINE Alu -2 307 1 587 142 236 0 chr1 26385666 26385793 -216278560 + MER58B DNA MER1_type 171 327 -14 2030 149 36 0 chr1 26386317 26386618 -216277735 - AluSx SINE Alu 0 312 1 189 353 87 20 chr1 26386628 26386778 -216277575 - MIR SINE MIR -5 257 98 2276 108 10 0 chr1 26386781 26387076 -216277277 + AluSp SINE Alu 1 298 -15 2069 136 0 26 chr1 26387834 26388144 -216276209 - AluSx SINE Alu -10 302 1 2377 142 37 22 chr1 26388146 26388555 -216275798 - MSTB LTR MaLR -9 417 3 1823 177 0 22 chr1 26389057 26389368 -216274985 + AluJb SINE Alu 1 304 -8 347 343 24 12 chr1 26389451 26389620 -216274733 - MIR SINE MIR -89 173 3 201 241 0 0 chr1 26391162 26391216 -216273137 + CT-rich Low_complexity Low_complexity 1 54 0 241 232 0 0 chr1 26391498 26391554 -216272799 + CT-rich Low_complexity Low_complexity 1 56 0 751 235 81 32 chr1 26393022 26393243 -216271110 + MIR SINE MIR 31 262 0 2057 131 3 10 chr1 26393344 26393642 -216270711 - AluSx SINE Alu -16 296 1 709 293 66 5 chr1 26394417 26394629 -216269724 + MIR SINE MIR 35 259 -3 359 241 43 57 chr1 26394809 26394950 -216269403 + MIR SINE MIR 6 144 -118 238 226 8 8 chr1 26395657 26395790 -216268563 + (TG)n Simple_repeat Simple_repeat 1 133 0 350 304 6 11 chr1 26395807 26395988 -216268365 + (TG)n Simple_repeat Simple_repeat 1 180 0 2153 121 0 3 chr1 26396038 26396336 -216268017 + AluSx SINE Alu 1 297 -15 468 283 11 0 chr1 26396408 26396585 -216267768 + (TG)n Simple_repeat Simple_repeat 1 179 0 488 282 86 41 chr1 26397655 26397875 -216266478 + MIR SINE MIR 33 262 0 288 250 66 0 chr1 26397896 26397972 -216266381 + L3 LINE CR1 1245 1325 -252 277 314 129 26 chr1 26397980 26398014 -216266339 - MIR SINE MIR -21 241 212 2048 116 17 3 chr1 26398014 26398307 -216266046 - AluSx SINE Alu -15 297 1 277 314 129 26 chr1 26398307 26398466 -216265887 - MIR SINE MIR -50 212 28 265 247 26 26 chr1 26398520 26398597 -216265756 + L2 LINE L2 3194 3270 -2 261 240 225 23 chr1 26398597 26398726 -216265627 + L3 LINE CR1 1422 1576 -1 658 183 73 19 chr1 26399036 26399086 -216265267 - MER63 DNA MER1_type -47 1014 968 1876 153 0 3 chr1 26399086 26399392 -216264961 + AluJb SINE Alu 1 305 0 658 183 73 19 chr1 26399392 26399647 -216264706 - MER63 DNA MER1_type -93 968 3 2390 92 7 0 chr1 26400382 26400685 -216263668 + AluSq SINE Alu 1 305 -8 2084 124 7 0 chr1 26400697 26401013 -216263340 - AluSx SINE Alu 0 318 1 776 194 0 0 chr1 26401024 26401148 -216263205 - FLAM_A SINE Alu -9 124 1 21 36 0 0 chr1 26401153 26401181 -216263172 + AT_rich Low_complexity Low_complexity 1 28 0 776 198 12 12 chr1 26401218 26401380 -216262973 - L1MA10 LINE L1 0 6334 6173 287 279 29 0 chr1 26401387 26401491 -216262862 - L1ME2 LINE L1 -163 6001 5895 2112 113 3 28 chr1 26401493 26401813 -216262540 - AluSx SINE Alu 0 312 1 1457 148 119 29 chr1 26401818 26402095 -216262258 - AluJo SINE Alu -10 302 1 1237 207 16 0 chr1 26402095 26402341 -216262012 - L1ME2 LINE L1 -340 5826 5577 2146 107 3 7 chr1 26402969 26403279 -216261074 - AluSx SINE Alu -3 309 1 2265 89 7 0 chr1 26404738 26405041 -216259312 - AluSx SINE Alu -6 306 2 2320 81 3 0 chr1 26405118 26405416 -216258937 - AluSg SINE Alu -11 299 1 246 127 36 55 chr1 26405450 26405505 -216258848 - MIR SINE MIR -76 132 79 483 250 48 0 chr1 26406534 26406658 -216257695 + MIR SINE MIR 97 226 -36 344 280 101 24 chr1 26406705 26406873 -216257480 - MIR SINE MIR -31 231 51 31 65 0 13 chr1 26407547 26407597 -216256756 + AT_rich Low_complexity Low_complexity 1 51 -25 1521 119 0 98 chr1 26407597 26407882 -216256471 - AluJb SINE Alu -25 287 31 31 65 0 13 chr1 26407882 26407908 -216256445 + AT_rich Low_complexity Low_complexity 51 76 0 2127 115 0 0 chr1 26408465 26408769 -216255584 + AluSq SINE Alu 1 304 -9 423 231 250 45 chr1 26408769 26408925 -216255428 - MIR SINE MIR -12 250 63 2393 74 0 0 chr1 26409110 26409419 -216254934 + AluY SINE Alu 1 309 -2 1011 217 45 9 chr1 26409428 26409649 -216254704 + MIR SINE MIR 34 262 0 2272 113 0 0 chr1 26409863 26410174 -216254179 - AluSx SINE Alu -1 311 1 229 292 97 0 chr1 26410183 26410255 -216254098 - L2 LINE L2 -1 3312 3234 2144 82 32 0 chr1 26410296 26410578 -216253775 - AluSg SINE Alu -19 291 1 629 313 51 0 chr1 26410857 26411052 -216253301 - MIR SINE MIR -48 214 10 238 263 42 76 chr1 26411254 26411372 -216252981 + L2 LINE L2 3151 3264 -8 2518 155 16 32 chr1 26411472 26411791 -216252562 + MSTB LTR MaLR 1 313 -113 2202 106 0 6 chr1 26411791 26412103 -216252250 - AluSx SINE Alu -2 310 1 2518 155 16 32 chr1 26412103 26412216 -216252137 + MSTB LTR MaLR 313 426 0 2239 109 81 62 chr1 26412393 26412582 -216251771 + MSTA LTR MaLR 1 185 -243 2128 115 7 0 chr1 26412582 26412887 -216251466 + AluSc SINE Alu 1 307 -2 2239 109 81 62 chr1 26412887 26413117 -216251236 + MSTA LTR MaLR 185 428 0 2446 107 22 25 chr1 26413168 26413533 -216250820 - THE1B LTR MaLR 0 364 1 2931 198 33 36 chr1 26413580 26414283 -216250070 - L1MB8 LINE L1 0 6178 5478 1064 142 0 6 chr1 26414325 26414494 -216249859 - AluJb SINE Alu -2 310 143 293 286 143 15 chr1 26414509 26414642 -216249711 - MIR SINE MIR -11 251 102 2020 163 25 0 chr1 26416272 26416598 -216247755 + MLT2C1 LTR ERVL 3 336 -61 864 176 0 0 chr1 26416598 26416768 -216247585 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 342 111 19 0 chr1 26416770 26416824 -216247529 + MLT2C1 LTR ERVL 500 554 0 202 292 0 0 chr1 26416919 26416967 -216247386 + L2 LINE L2 3209 3256 -16 1358 195 26 89 chr1 26417372 26417752 -216246601 - L1ME3 LINE L1 -53 6109 5754 1761 158 3 0 chr1 26417772 26418070 -216246283 - AluJo SINE Alu -13 299 1 572 259 197 73 chr1 26418309 26418814 -216245539 - L2 LINE L2 0 3313 2703 1936 117 3 7 chr1 26418814 26419203 -216245150 - AluSx SINE Alu 0 388 1 572 259 197 73 chr1 26419203 26419377 -216244976 - L2 LINE L2 -610 2703 2552 589 225 127 80 chr1 26419397 26419554 -216244799 + MIR SINE MIR 13 184 -78 1692 156 23 13 chr1 26419554 26419856 -216244497 - AluJo SINE Alu -7 305 1 589 225 127 80 chr1 26419856 26419911 -216244442 + MIR SINE MIR 184 235 -27 241 315 99 25 chr1 26419941 26420103 -216244250 - L2 LINE L2 -789 2525 2352 249 224 0 0 chr1 26420578 26420636 -216243717 + CT-rich Low_complexity Low_complexity 4 61 0 201 74 0 0 chr1 26420672 26420699 -216243654 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 438 36 0 0 chr1 26420732 26420788 -216243565 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 409 266 125 0 chr1 26420856 26420984 -216243369 - MIR3 SINE MIR -30 178 35 1192 209 44 113 chr1 26421166 26421708 -216242645 - LTR22 LTR ERVK -4 505 1 231 216 307 0 chr1 26422014 26422102 -216242251 + MIR SINE MIR 22 136 -72 190 309 217 20 chr1 26422687 26422839 -216241514 + L2 LINE L2 2804 2985 -328 315 122 0 0 chr1 26423075 26423124 -216241229 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 373 150 14 9 chr1 26423124 26423141 -216241212 - L1MC3 LINE L1 -753 7032 7017 1247 84 6 0 chr1 26423141 26423319 -216241034 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 373 150 14 9 chr1 26423319 26423392 -216240961 - L1MC3 LINE L1 -768 7017 6966 1750 60 0 26 chr1 26423406 26423638 -216240715 - AluY SINE Alu -12 299 74 4055 168 69 27 chr1 26423696 26424273 -216240080 - L1MB5 LINE L1 0 6174 5623 1666 119 53 69 chr1 26424273 26424576 -216239777 + AluSx SINE Alu 1 298 -14 4055 168 69 27 chr1 26424576 26424728 -216239625 - L1MB5 LINE L1 -551 5623 5479 1467 145 42 28 chr1 26424728 26425017 -216239336 - L1MA8 LINE L1 -4 6287 5995 4055 168 69 27 chr1 26425017 26425479 -216238874 - L1MB5 LINE L1 -695 5479 4928 25 31 0 0 chr1 26425480 26425512 -216238841 + AT_rich Low_complexity Low_complexity 1 32 0 946 236 144 0 chr1 26426321 26426592 -216237761 - L1MC4 LINE L1 -200 7842 7533 537 145 0 0 chr1 26426597 26426673 -216237680 - AluJ/FLAM SINE Alu -235 77 2 5724 165 65 47 chr1 26426681 26427629 -216236724 - L1MC1 LINE L1 0 6333 5403 949 218 0 0 chr1 26427629 26427799 -216236554 - FAM SINE Alu -5 170 1 5724 165 65 47 chr1 26427799 26428687 -216235666 - L1MC1 LINE L1 -930 5403 4532 2019 142 0 0 chr1 26428687 26428996 -216235357 - AluSx SINE Alu -3 309 1 5724 165 65 47 chr1 26428996 26429342 -216235011 - L1MC1 LINE L1 -1801 4532 4194 274 103 0 0 chr1 26429342 26429381 -216234972 + U2 snRNA snRNA 1 39 -149 5724 165 65 47 chr1 26429381 26429580 -216234773 - L1MC1 LINE L1 -2139 4194 3850 1377 169 77 7 chr1 26429568 26429840 -216234513 - L1MC4 LINE L1 -1009 7033 6743 * 467 278 104 12 chr1 26429960 26430133 -216234220 - L2 LINE L2 -942 2372 2184 411 156 111 11 chr1 26430200 26430290 -216234063 + MIR SINE MIR 115 213 -49 884 249 93 88 chr1 26430532 26431446 -216232907 - L1ME3A LINE L1 -114 6056 5148 2697 90 3 8 chr1 26431446 26431822 -216232531 + L1PB1 LINE L1 5776 6149 -2 884 249 93 88 chr1 26431822 26432124 -216232229 - L1ME3A LINE L1 -1022 5148 4849 2243 99 0 0 chr1 26432124 26432428 -216231925 - AluSx SINE Alu -8 304 1 884 249 93 88 chr1 26432428 26432950 -216231403 - L1ME3A LINE L1 -1321 4849 4315 25 51 0 0 chr1 26433078 26433117 -216231236 + AT_rich Low_complexity Low_complexity 1 39 0 2087 104 13 0 chr1 26433131 26433439 -216230914 + AluSx SINE Alu 1 312 0 981 231 77 126 chr1 26433473 26433966 -216230387 - L1ME3A LINE L1 -1812 4334 3818 1762 137 29 35 chr1 26433966 26434280 -216230073 - AluJb SINE Alu 0 312 1 2062 115 7 7 chr1 26434282 26434577 -216229776 - AluSq SINE Alu -16 297 3 981 231 77 126 chr1 26434577 26435282 -216229071 - L1ME3A LINE L1 -2329 3817 3211 271 180 191 0 chr1 26435309 26435398 -216228955 - L1MC4 LINE L1 -4 8021 7916 307 105 53 13 chr1 26435405 26435481 -216228872 + CT-rich Low_complexity Low_complexity 1 79 0 1119 267 16 26 chr1 26435486 26435864 -216228489 - L1MC4 LINE L1 -146 7879 7506 2832 216 59 10 chr1 26435866 26436458 -216227895 + MLT1E2 LTR MaLR 6 626 0 289 263 155 7 chr1 26436458 26436730 -216227623 - L1MC4 LINE L1 -514 7511 2947 911 130 26 0 chr1 26436730 26436884 -216227469 - BC200 scRNA scRNA -42 158 1 768 283 125 40 chr1 26436884 26437020 -216227333 - L1MC4 LINE L1 -3167 2962 2839 2164 88 20 0 chr1 26437020 26437315 -216227038 - AluY SINE Alu -10 301 1 768 283 125 40 chr1 26437315 26437875 -216226478 - L1MC4 LINE L1 -3290 2839 2207 328 281 97 49 chr1 26437902 26438087 -216226266 - L1MC4 LINE L1 -4003 2126 1933 1602 151 13 37 chr1 26438220 26438518 -216225835 - AluJo SINE Alu -21 291 1 1541 256 87 76 chr1 26438575 26438988 -216225365 - L1MC4 LINE L1 -4584 1726 1319 905 199 0 11 chr1 26438988 26439179 -216225174 - MER53 DNA DNA 0 189 1 1541 256 87 76 chr1 26439179 26439598 -216224755 - L1MC4 LINE L1 -4991 1319 906 2035 120 13 3 chr1 26439598 26439897 -216224456 - AluSx SINE Alu -10 302 1 1541 256 87 76 chr1 26439897 26440507 -216223846 - L1MC4 LINE L1 -5404 906 266 334 311 43 0 chr1 26440536 26440697 -216223656 - L1MC4 LINE L1 -5941 178 11 513 236 16 31 chr1 26440845 26440972 -216223381 - L2 LINE L2 0 3272 3148 729 260 59 5 chr1 26440985 26441189 -216223164 - MIR SINE MIR -40 222 8 460 244 0 24 chr1 26441618 26441741 -216222612 + MIR3 SINE MIR 88 207 -1 218 316 158 43 chr1 26441888 26442122 -216222231 + L2 LINE L2 2972 3232 -40 423 0 0 0 chr1 26442212 26442259 -216222094 + (TA)n Simple_repeat Simple_repeat 2 48 0 453 233 155 78 chr1 26442309 26442580 -216221773 - L1ME4a LINE L1 -23 6098 5807 2188 71 4 4 chr1 26442887 26443214 -216221139 - AluSx SINE Alu 0 327 1 772 141 0 0 chr1 26444476 26444604 -216219749 - L1MD1 LINE L1 -1 6241 6114 320 210 0 0 chr1 26444611 26444673 -216219680 + AluS SINE Alu 1 62 -241 239 154 0 0 chr1 26444701 26444753 -216219600 - L1MC4 LINE L1 -1339 6703 6652 327 25 0 0 chr1 26444783 26444823 -216219530 + (GA)n Simple_repeat Simple_repeat 2 41 0 1943 89 7 29 chr1 26444823 26445103 -216219250 + AluSc SINE Alu 16 289 -20 529 14 29 0 chr1 26445103 26445173 -216219180 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 3918 148 75 18 chr1 26445186 26445835 -216218518 - L1MD1 LINE L1 -133 6109 5413 615 155 13 45 chr1 26445835 26445990 -216218363 - L1MA5 LINE L1 0 6300 6151 3918 148 75 18 chr1 26445990 26446064 -216218289 - L1MD1 LINE L1 -829 5413 5345 2201 94 0 7 chr1 26446207 26446505 -216217848 + AluSx SINE Alu 1 296 -16 540 220 191 14 chr1 26446610 26446819 -216217534 - LTR50 LTR ERVL -291 504 259 290 222 74 37 chr1 26446817 26446853 -216217500 - LTR50 LTR ERVL -55 740 707 * 185 0 40 0 chr1 26446853 26446878 -216217475 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2296 63 0 0 chr1 26446880 26447164 -216217189 - AluSg SINE Alu -26 284 1 290 222 74 37 chr1 26447164 26447232 -216217121 - LTR50 LTR ERVL -88 707 629 1108 221 290 0 chr1 26447273 26447680 -216216673 - LTR50 LTR ERVL -270 525 1 700 290 50 9 chr1 26447686 26447907 -216216446 + MIR SINE MIR 20 249 -13 526 309 36 6 chr1 26447979 26448147 -216216206 + MIR3 SINE MIR 9 181 -27 247 245 0 0 chr1 26448363 26448416 -216215937 + GA-rich Low_complexity Low_complexity 2 54 0 2448 55 7 0 chr1 26448523 26448832 -216215521 - AluY SINE Alu 0 311 1 364 247 39 57 chr1 26448832 26448995 -216215358 + MER5A DNA MER1_type 15 185 -4 409 202 0 216 chr1 26449082 26449290 -216215063 - MIR SINE MIR 0 262 100 210 310 35 11 chr1 26449687 26449774 -216214579 + L3b LINE CR1 1298 1386 -197 573 272 57 31 chr1 26449803 26450031 -216214322 + MIR SINE MIR 29 262 0 1485 163 6 62 chr1 26450047 26450393 -216213960 + AluJo SINE Alu 1 312 0 277 232 106 28 chr1 26450656 26450798 -216213555 - L2 LINE L2 -335 2978 2826 191 167 0 0 chr1 26651350 26651386 -216012967 - MIR SINE MIR -118 144 109 469 266 95 28 chr1 26651390 26651642 -216012711 - LTR37B LTR ERV1 -3 465 197 2204 100 4 0 chr1 26651721 26652037 -216012316 + AluSq SINE Alu 1 317 0 273 279 32 52 chr1 26652054 26652071 -216012282 - LTR37B LTR ERV1 -317 151 135 1882 159 14 0 chr1 26652071 26652361 -216011992 + AluJb SINE Alu 1 294 -18 273 279 32 52 chr1 26652361 26652497 -216011856 - LTR37B LTR ERV1 -333 135 1 2318 129 0 0 chr1 26652644 26652954 -216011399 + AluSx SINE Alu 1 310 -2 812 193 18 41 chr1 26652975 26653146 -216011207 + FRAM SINE Alu 1 40 0 309 330 9 18 chr1 26653149 26653258 -216011095 - MIR SINE MIR -71 137 30 1817 178 20 0 chr1 26653686 26653989 -216010364 - AluSx SINE Alu -3 309 1 2191 99 0 7 chr1 26654119 26654456 -216009897 - AluSg SINE Alu 0 335 1 839 231 37 63 chr1 26654536 26654804 -216009549 - MIR SINE MIR 0 262 2 637 284 39 15 chr1 26655373 26655577 -216008776 + MIR SINE MIR 50 258 -4 4724 45 26 0 chr1 26656228 26656804 -216007549 - LTR10C LTR ERV1 0 591 1 513 211 7 70 chr1 26656813 26657099 -216007254 + MER4C LTR ERV1 1 349 -315 440 166 191 127 chr1 26657068 26657127 -216007226 + MER4C LTR ERV1 165 219 -246 * 2179 107 4 0 chr1 26657127 26657430 -216006923 - AluSx SINE Alu 0 307 4 440 166 191 127 chr1 26657430 26657652 -216006701 + MER4C LTR ERV1 219 465 0 24 32 0 0 chr1 26657919 26657950 -216006403 + AT_rich Low_complexity Low_complexity 1 31 0 6376 118 5 53 chr1 26657952 26658093 -216006260 - L1MC1 LINE L1 -6 6327 6181 1679 123 12 0 chr1 26658093 26658336 -216006017 - AluSx SINE Alu -8 304 59 6376 118 5 53 chr1 26658336 26658565 -216005788 - L1MC1 LINE L1 -152 6181 5943 2271 101 3 19 chr1 26658565 26658872 -216005481 - AluSx SINE Alu -10 302 1 6376 118 5 53 chr1 26658872 26659539 -216004814 - L1MC1 LINE L1 -390 5943 5245 2103 118 4 0 chr1 26659539 26659856 -216004497 - AluSg SINE Alu 0 318 1 6376 118 5 53 chr1 26659856 26659884 -216004469 - L1MC1 LINE L1 -1088 5245 5217 2571 77 0 0 chr1 26659884 26660195 -216004158 - AluY SINE Alu 0 311 1 6376 118 5 53 chr1 26660195 26660319 -216004034 - L1MC1 LINE L1 -1116 5217 5186 560 122 0 0 chr1 26660380 26660454 -216003899 + AluS SINE Alu 3 76 -237 1278 136 0 0 chr1 26660556 26660733 -216003620 + AluSg/x SINE Alu 129 305 -7 1917 148 7 7 chr1 26660743 26661040 -216003313 + AluJb SINE Alu 1 297 -15 1116 154 0 28 chr1 26661127 26661309 -216003044 + AluJo SINE Alu 127 303 -9 435 279 137 6 chr1 26661498 26661659 -216002694 + MIR SINE MIR 74 255 -7 1902 162 0 0 chr1 26662093 26662371 -216001982 + AluJb SINE Alu 1 278 -34 198 0 0 0 chr1 26662371 26662393 -216001960 + (TC)n Simple_repeat Simple_repeat 1 22 0 386 358 88 35 chr1 26662463 26662548 -216001805 - L2 LINE L2 -339 2975 2896 2276 94 7 10 chr1 26662548 26662847 -216001506 + AluSc SINE Alu 1 298 -11 386 358 88 35 chr1 26662847 26663046 -216001307 - L2 LINE L2 -418 2896 2676 434 243 61 40 chr1 26663068 26663216 -216001137 + MER58C DNA MER1_type 39 189 -26 2516 74 0 0 chr1 26663639 26663937 -216000416 + AluSc SINE Alu 1 298 -11 28 0 0 0 chr1 26664132 26664160 -216000193 + AT_rich Low_complexity Low_complexity 1 28 0 180 77 0 0 chr1 26665946 26665972 -215998381 + (TATATG)n Simple_repeat Simple_repeat 5 30 0 220 245 20 0 chr1 26667745 26667794 -215996559 - L2 LINE L2 -1 3312 3263 235 195 0 0 chr1 26667934 26667975 -215996378 + L2 LINE L2 3261 3301 -12 2204 103 7 10 chr1 26669828 26670120 -215994233 + AluSq SINE Alu 7 297 -16 284 169 31 0 chr1 26670120 26670185 -215994168 + L1ME3A LINE L1 6099 6165 -5 387 286 254 5 chr1 26670242 26670431 -215993922 + MIR SINE MIR 20 255 -7 200 213 0 64 chr1 26670930 26670977 -215993376 + MER5B DNA MER1_type 1 44 -134 900 283 147 3 chr1 26671002 26671295 -215993058 + L1MEc LINE L1 36 370 -6026 200 217 0 0 chr1 26671324 26671370 -215992983 + T-rich Low_complexity Low_complexity 1 46 0 1662 182 7 10 chr1 26671423 26671714 -215992639 + AluJb SINE Alu 1 290 -22 189 0 0 0 chr1 26671734 26671755 -215992598 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 258 95 0 0 chr1 26671754 26671796 -215992557 + (CA)n Simple_repeat Simple_repeat 1 42 0 762 245 93 31 chr1 26671799 26672056 -215992297 + L1MEc LINE L1 419 691 -5705 1235 177 9 0 chr1 26672061 26672287 -215992066 - LTR54 LTR ERV1 -7 503 276 30 27 0 0 chr1 26672754 26672791 -215991562 + AT_rich Low_complexity Low_complexity 1 37 0 1152 168 62 16 chr1 26672805 26673049 -215991304 - LTR54B LTR ERV1 -243 255 1 353 196 75 0 chr1 26673060 26673167 -215991186 + L1MEc LINE L1 701 815 -5581 1868 147 3 48 chr1 26673177 26673491 -215990862 + AluJo SINE Alu 1 300 -12 7316 152 78 37 chr1 26673493 26674731 -215989622 + L1MCa LINE L1 18 1335 -5091 1992 137 43 3 chr1 26674731 26675030 -215989323 - AluJb SINE Alu -1 311 1 7316 152 78 37 chr1 26675030 26675374 -215988979 + L1MCa LINE L1 1335 1664 -4762 515 188 161 0 chr1 26675374 26675486 -215988867 + AluJ SINE Alu 1 130 -172 1027 122 6 64 chr1 26675490 26675514 -215988839 + AluJ SINE Alu 129 153 -159 2741 164 40 8 chr1 26675514 26675985 -215988368 + MER66B LTR ERV1 1 486 0 1027 122 6 64 chr1 26675985 26676132 -215988221 + AluJ SINE Alu 153 290 -22 833 235 62 49 chr1 26676143 26676260 -215988093 + AluSq SINE Alu 2 116 -197 258 32 0 0 chr1 26676260 26676291 -215988062 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1505 125 177 4 chr1 26676295 26676543 -215987810 + AluSg1 SINE Alu 5 295 -14 833 235 62 49 chr1 26676543 26676663 -215987690 + AluSq SINE Alu 118 247 -66 583 146 11 0 chr1 26676693 26676782 -215987571 - FRAM/FAM SINE Alu -95 90 1 772 138 0 0 chr1 26676789 26676898 -215987455 - AluSg/x SINE Alu -12 300 192 1258 135 0 0 chr1 26677000 26677178 -215987175 + AluSg/x SINE Alu 131 308 -4 197 320 0 0 chr1 26677303 26677353 -215987000 - MIR SINE MIR -83 125 76 2423 81 7 0 chr1 26677654 26677963 -215986390 - AluSp SINE Alu -2 311 1 393 269 21 103 chr1 26678024 26678266 -215986087 + L2 LINE L2 2953 3174 -139 807 204 0 0 chr1 26678268 26678400 -215985953 - FLAM_C SINE Alu -1 132 1 318 26 0 0 chr1 26678406 26678445 -215985908 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 1844 159 27 0 chr1 26678452 26678748 -215985605 - AluJo SINE Alu -8 304 1 2069 145 0 3 chr1 26678756 26679059 -215985294 - AluSx SINE Alu -10 302 1 602 216 74 28 chr1 26679066 26679242 -215985111 + L2 LINE L2 3118 3301 -12 2534 80 0 6 chr1 26679268 26679582 -215984771 + AluSx SINE Alu 1 312 0 718 178 10 122 chr1 26679716 26679913 -215984440 + MIR SINE MIR 49 223 -39 244 254 70 28 chr1 26679937 26680008 -215984345 - MIR SINE MIR -21 241 168 323 289 52 10 chr1 26680012 26680109 -215984244 + L1ME3A LINE L1 6065 6165 -5 362 247 0 0 chr1 26680127 26680208 -215984145 - MIR SINE MIR -84 178 98 776 224 20 7 chr1 26680210 26680362 -215983991 + AluSg/x SINE Alu 119 272 -40 2140 116 3 14 chr1 26680378 26680683 -215983670 + AluSx SINE Alu 1 302 0 347 277 8 39 chr1 26680816 26680946 -215983407 - L1ME LINE L1 -368 5753 5628 191 261 174 0 chr1 26680949 26681012 -215983341 - MIR SINE MIR -76 132 58 249 220 153 0 chr1 26681012 26681071 -215983282 + MER91A DNA MER1_type 2 69 -127 721 274 151 31 chr1 26681249 26681600 -215982753 - L2 LINE L2 0 3313 2921 1885 185 0 6 chr1 26681716 26682030 -215982323 - AluJb SINE Alu 0 312 1 221 179 39 141 chr1 26682265 26682343 -215982010 + MIR SINE MIR 7 76 -186 799 293 8 26 chr1 26682662 26682928 -215981425 - MIR SINE MIR 0 262 2 1470 134 9 17 chr1 26683659 26683890 -215980463 + AluJo SINE Alu 40 268 -44 230 196 0 0 chr1 26684003 26684054 -215980299 + AluJo SINE Alu 250 300 0 427 280 40 0 chr1 26684118 26684218 -215980135 - L2 LINE L2 -8 3305 3202 992 179 40 31 chr1 26684300 26684523 -215979830 - L1ME3 LINE L1 -1 6161 5937 229 238 250 52 chr1 26684542 26684649 -215979704 - L1ME3 LINE L1 -289 5832 5747 2112 129 0 39 chr1 26684649 26684960 -215979393 + AluSx SINE Alu 1 299 -13 229 238 250 52 chr1 26684960 26685024 -215979329 - L1ME3 LINE L1 -374 5747 5627 271 317 135 0 chr1 26685675 26685883 -215978470 + L2 LINE L2 2461 2696 -618 2250 136 0 0 chr1 26685883 26686185 -215978168 - AluSx SINE Alu -10 302 1 1731 181 3 20 chr1 26686247 26686551 -215977802 + AluJo SINE Alu 13 311 -1 2407 151 7 31 chr1 26686574 26686791 -215977562 + L1MB3 LINE L1 5751 5972 -211 2292 102 0 7 chr1 26686791 26687094 -215977259 + AluSq SINE Alu 1 301 -12 2407 151 7 31 chr1 26687094 26687197 -215977156 + L1MB3 LINE L1 5972 6076 -107 2045 156 3 0 chr1 26687197 26687499 -215976854 + AluSx SINE Alu 3 305 -7 2407 151 7 31 chr1 26687499 26687621 -215976732 + L1MB3 LINE L1 6076 6183 0 232 297 94 94 chr1 26687974 26688054 -215976299 + L2 LINE L2 2956 3035 -278 2023 118 9 50 chr1 26688054 26688375 -215975978 + AluSx SINE Alu 1 308 -4 232 297 94 94 chr1 26688375 26688560 -215975793 + L2 LINE L2 3034 3221 -92 350 186 139 0 chr1 26688562 26688648 -215975705 + MLT1A1 LTR MaLR 2 99 -266 2476 48 0 35 chr1 26690503 26690819 -215973534 + AluY SINE Alu 1 305 -6 926 245 51 16 chr1 26691182 26691435 -215972918 + MIR SINE MIR 1 262 0 182 308 176 47 chr1 26692638 26692874 -215971479 - L2 LINE L2 -2 3270 3066 2976 0 0 0 chr1 26692874 26693185 -215971168 + AluYa5 SINE Alu 1 311 0 182 308 176 47 chr1 26693185 26693328 -215971025 - L2 LINE L2 -206 3066 2842 2264 77 40 0 chr1 26693358 26693656 -215970697 - AluSg SINE Alu 0 310 1 301 282 160 26 chr1 26693906 26694062 -215970291 - MIR SINE MIR -12 250 74 224 302 47 0 chr1 26694241 26694347 -215970006 - MIR3 SINE MIR -24 184 74 34 72 0 0 chr1 26694497 26694566 -215969787 + GC_rich Low_complexity Low_complexity 1 69 0 359 246 145 36 chr1 26695877 26696015 -215968338 - MIR3 SINE MIR -8 200 48 263 128 0 0 chr1 26696015 26696062 -215968291 - AluSg SINE Alu -1 307 261 2496 80 0 6 chr1 26696120 26696432 -215967921 + AluSx SINE Alu 1 310 -2 359 279 59 7 chr1 26697608 26697744 -215966609 - MIR3 SINE MIR -33 175 33 457 264 40 20 chr1 26698657 26698805 -215965548 - MIR SINE MIR -27 235 85 1685 104 39 0 chr1 26698809 26699039 -215965314 - AluSg SINE Alu -44 266 28 2156 103 34 0 chr1 26699152 26699444 -215964909 + AluSx SINE Alu 1 302 -10 309 259 82 10 chr1 26700575 26700677 -215963676 + MIR SINE MIR 44 152 -110 2096 153 0 6 chr1 26701657 26701970 -215962383 - AluJb SINE Alu -1 311 1 722 276 9 32 chr1 26702065 26702282 -215962071 - MIR SINE MIR 0 262 51 2255 196 24 41 chr1 26702614 26702666 -215961687 - Zaphod DNA AcHobo -123 3908 3857 1694 168 7 20 chr1 26702666 26702963 -215961390 + AluJo SINE Alu 1 293 -19 2255 196 24 41 chr1 26702963 26703351 -215961002 - Zaphod DNA AcHobo -174 3857 3480 2290 96 27 3 chr1 26703351 26703652 -215960701 + AluSx SINE Alu 5 312 0 2255 196 24 41 chr1 26703652 26703842 -215960511 - Zaphod DNA AcHobo -551 3480 3288 541 224 24 0 chr1 26703851 26703975 -215960378 - Zaphod DNA AcHobo -3371 660 534 1419 118 63 37 chr1 26703975 26704191 -215960162 - Tigger7 DNA MER2_type 0 2587 2361 2354 97 0 3 chr1 26704191 26704489 -215959864 + AluSg SINE Alu 1 297 -13 1419 118 63 37 chr1 26704489 26704543 -215959810 - Tigger7 DNA MER2_type -226 2361 2310 1025 153 6 0 chr1 26704548 26704718 -215959635 - Tigger7 DNA MER2_type -562 171 1 1684 230 26 67 chr1 26704725 26705191 -215959162 - Zaphod DNA AcHobo -3526 505 59 818 166 77 47 chr1 26705191 26705207 -215959146 - AluJo/FRAM SINE Alu -1 311 297 2468 82 0 0 chr1 26705207 26705510 -215958843 - AluSq SINE Alu -1 312 10 818 166 77 47 chr1 26705510 26705662 -215958691 - AluJo/FRAM SINE Alu -15 297 138 476 210 59 17 chr1 26706042 26706161 -215958192 + MIR3 SINE MIR 36 159 -49 854 150 0 0 chr1 26706225 26706358 -215957995 + FLAM_C SINE Alu 1 133 0 270 321 0 12 chr1 26706371 26706452 -215957901 - MER5B DNA MER1_type -32 146 67 430 309 22 11 chr1 26706452 26706630 -215957723 + ERVL LTR ERVL 1024 1203 -4451 2277 111 0 3 chr1 26706691 26706989 -215957364 + AluSx SINE Alu 1 297 -15 946 345 64 6 chr1 26707172 26707705 -215956648 + ERVL LTR ERVL 1298 1861 -3793 1362 262 77 50 chr1 26707783 26708088 -215956265 + L2 LINE L2 2331 2626 -687 2114 136 3 3 chr1 26708088 26708390 -215955963 - AluSx SINE Alu -10 302 1 1362 262 77 50 chr1 26708390 26708755 -215955598 + L2 LINE L2 2626 3013 -300 1379 78 12 0 chr1 26708757 26708924 -215955429 - AluSc SINE Alu -20 289 121 819 145 0 48 chr1 26708960 26709105 -215955248 + FLAM_C SINE Alu 6 143 0 601 293 75 0 chr1 26709121 26709333 -215955020 - LTR16A LTR ERVL -163 287 60 448 349 7 0 chr1 26709416 26709568 -215954785 + ERVL LTR ERVL 4779 4931 -833 769 126 0 70 chr1 26709583 26709726 -215954627 + FLAM_C SINE Alu 1 133 0 2157 116 34 0 chr1 26709821 26710115 -215954238 + AluSx SINE Alu 2 305 -7 509 341 19 0 chr1 26710636 26710850 -215953503 + LTR16A LTR ERVL 70 287 -163 345 329 25 13 chr1 26711411 26711569 -215952784 - MIR SINE MIR -22 240 81 244 253 160 0 chr1 26711587 26711662 -215952691 - MIR SINE MIR -4 258 172 324 251 186 39 chr1 26711683 26711962 -215952391 - L1MEd LINE L1 -3673 2456 2137 2336 99 0 0 chr1 26712052 26712344 -215952009 - AluSq SINE Alu -21 292 1 597 318 66 28 chr1 26712440 26712569 -215951784 - L1MEd LINE L1 -5138 981 858 1880 167 6 6 chr1 26712569 26712880 -215951473 - AluJb SINE Alu -1 311 1 597 318 66 28 chr1 26712880 26713247 -215951106 - L1MEd LINE L1 -5261 858 466 2415 105 0 0 chr1 26713270 26713574 -215950779 - AluSx SINE Alu -8 304 1 2267 112 0 10 chr1 26713586 26713889 -215950464 - AluSc SINE Alu -9 300 1 279 0 0 0 chr1 26713989 26714020 -215950333 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1578 166 48 4 chr1 26714022 26714293 -215950060 - AluJb SINE Alu -29 283 1 319 311 106 13 chr1 26714498 26714649 -215949704 - L1MEd LINE L1 -5944 175 11 2431 90 0 0 chr1 26714650 26714949 -215949404 - AluSq SINE Alu -14 299 1 239 202 95 24 chr1 26715068 26715152 -215949201 - MIR SINE MIR -56 206 117 2473 35 45 3 chr1 26715158 26715448 -215948905 - AluY SINE Alu -9 302 1 2268 99 30 0 chr1 26715768 26716071 -215948282 - AluSx SINE Alu 0 312 1 934 120 0 0 chr1 26716075 26716200 -215948153 - AluJb SINE Alu -187 125 1 782 263 45 12 chr1 26716296 26716539 -215947814 + MIR SINE MIR 12 262 0 2029 150 13 19 chr1 26716642 26716956 -215947397 + AluJb SINE Alu 1 312 0 275 131 70 0 chr1 26716958 26717020 -215947333 + FLAM_A SINE Alu 25 59 -73 221 57 29 0 chr1 26717054 26717089 -215947264 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 186 226 0 38 chr1 26717766 26717819 -215946534 - L3 LINE CR1 0 1577 1527 1404 85 0 0 chr1 26717891 26718068 -215946285 - AluSg/x SINE Alu -3 309 133 2033 151 0 7 chr1 26718069 26718368 -215945985 - AluSx SINE Alu -15 297 1 2264 95 7 3 chr1 26718368 26718662 -215945691 - AluSg SINE Alu -14 296 1 2420 94 0 3 chr1 26719156 26719465 -215944888 - AluSg SINE Alu 0 310 3 2422 84 0 3 chr1 26719467 26719764 -215944589 - AluSq SINE Alu -17 296 1 4870 244 92 32 chr1 26719765 26720172 -215944181 - L1M4 LINE L1 -1095 5051 4670 1603 82 0 5 chr1 26720172 26720367 -215943986 - AluSg SINE Alu -116 194 1 4870 244 92 32 chr1 26720367 26721490 -215942863 - L1M4 LINE L1 -1476 4670 3616 2153 136 0 13 chr1 26721490 26721798 -215942555 - AluJb SINE Alu -8 304 1 4870 244 92 32 chr1 26721798 26722527 -215941826 - L1M4 LINE L1 -2530 3616 2522 1047 99 0 0 chr1 26722528 26722659 -215941694 + AluSg SINE Alu 1 131 -179 265 250 13 26 chr1 26723208 26723284 -215941069 + MIR3 SINE MIR 117 191 -17 347 269 185 0 chr1 26723819 26723949 -215940404 - MIR SINE MIR -60 202 49 375 286 0 20 chr1 26724028 26724166 -215940187 + MIR3 SINE MIR 53 186 -22 197 292 0 31 chr1 26724894 26724959 -215939394 - MIR SINE MIR -60 148 86 2049 153 3 19 chr1 26725094 26725407 -215938946 - AluJo SINE Alu -4 308 1 2411 94 0 0 chr1 26725668 26725966 -215938387 + AluSx SINE Alu 1 298 -14 563 327 82 4 chr1 26725967 26726224 -215938129 - L2 LINE L2 -17 3296 3020 278 256 96 48 chr1 26726603 26726728 -215937625 - MIR3 SINE MIR -63 145 15 2458 98 0 0 chr1 26728686 26728993 -215935360 + AluSx SINE Alu 1 307 -5 286 278 52 21 chr1 26729000 26729097 -215935256 - MIR SINE MIR -106 156 57 223 320 115 0 chr1 26730563 26730685 -215933668 - L2 LINE L2 -213 3059 2924 206 143 0 0 chr1 26731200 26731235 -215933118 + MIR SINE MIR 90 124 -84 582 269 9 67 chr1 26731252 26731475 -215932878 - MIR SINE MIR -12 250 41 630 150 16 94 chr1 26732408 26732535 -215931818 - FLAM_A SINE Alu -16 117 1 1696 186 19 19 chr1 26732539 26732851 -215931502 - AluJo SINE Alu 0 312 1 823 254 160 15 chr1 26732894 26733225 -215931128 + L2 LINE L2 2349 2727 -587 313 264 18 45 chr1 26733225 26733335 -215931018 + L2 LINE L2 2906 3012 -301 1912 101 4 40 chr1 26733438 26733716 -215930637 + AluSc SINE Alu 38 305 -4 1059 193 5 5 chr1 26733747 26733949 -215930404 + MLT1A1 LTR MaLR 164 365 0 256 216 0 0 chr1 26733962 26734013 -215930340 + L2 LINE L2 3224 3274 -39 416 100 44 33 chr1 26734336 26734426 -215929927 - L1MA8 LINE L1 0 6291 6201 511 291 36 76 chr1 26734426 26734701 -215929652 + L2 LINE L2 3008 3271 -1 363 280 118 46 chr1 26734887 26735216 -215929137 + MLT1K LTR MaLR 228 580 -8 601 212 20 26 chr1 26735573 26735724 -215928629 - MIR3 SINE MIR 0 208 59 2394 116 0 0 chr1 26735778 26736088 -215928265 + AluSx SINE Alu 1 310 -2 498 104 42 31 chr1 26736365 26736461 -215927892 + L1MC1 LINE L1 6236 6332 -1 2025 102 0 75 chr1 26736476 26736781 -215927572 + AluSx SINE Alu 3 284 -28 366 23 0 0 chr1 26736781 26736824 -215927529 + (CA)n Simple_repeat Simple_repeat 2 44 0 644 261 28 17 chr1 26736845 26737025 -215927328 + MIR SINE MIR 81 262 0 344 266 104 19 chr1 26737201 26737355 -215926998 + MIR SINE MIR 28 194 -68 347 291 89 16 chr1 26737508 26737720 -215926633 - L1MC4 LINE L1 0 8042 7847 2429 104 3 0 chr1 26737720 26738028 -215926325 + AluSp SINE Alu 1 309 -4 347 291 89 16 chr1 26738028 26738084 -215926269 - L1MC4 LINE L1 -195 7847 7642 221 305 51 45 chr1 26738881 26739058 -215925295 + MER5B DNA MER1_type 1 178 0 1847 100 8 0 chr1 26739927 26740168 -215924185 - AluSq SINE Alu -60 253 11 1144 114 124 10 chr1 26740781 26740974 -215923379 - AluJb SINE Alu -20 292 78 1548 137 0 0 chr1 26740975 26741186 -215923167 - AluSq SINE Alu -102 211 1 2156 118 3 10 chr1 26741188 26741485 -215922868 - AluSx SINE Alu -17 295 1 267 238 323 37 chr1 26741611 26741800 -215922553 - L3 LINE CR1 -123 1454 1212 2155 104 31 3 chr1 26745772 26746061 -215918292 - AluSg SINE Alu -13 297 1 1849 137 0 18 chr1 26746263 26746541 -215917812 + AluJb SINE Alu 32 304 -8 2189 128 7 0 chr1 26746742 26747038 -215917315 + AluSx SINE Alu 1 298 -14 2335 110 3 0 chr1 26747059 26747367 -215916986 + AluSq SINE Alu 1 309 -4 2406 77 3 3 chr1 26748134 26748431 -215915922 - AluSq SINE Alu -16 297 1 2309 96 3 0 chr1 26748431 26748724 -215915629 - AluSp SINE Alu -19 294 1 1029 170 112 4 chr1 26748839 26749080 -215915273 + Charlie4 DNA MER1_type 30 296 -1665 2350 57 64 0 chr1 26749220 26749500 -215914853 - AluY SINE Alu -13 298 1 550 167 8 68 chr1 26749682 26749814 -215914539 - FLAM_A SINE Alu -6 127 4 2447 90 0 10 chr1 26749824 26750135 -215914218 - AluSc SINE Alu -1 308 1 363 175 156 71 chr1 26750135 26750188 -215914165 + Charlie4 DNA MER1_type 1793 1840 -121 2288 97 10 13 chr1 26750188 26750499 -215913854 - AluSx SINE Alu -2 310 1 363 175 156 71 chr1 26750499 26750599 -215913754 + Charlie4 DNA MER1_type 1840 1959 -2 430 226 83 44 chr1 26750600 26750781 -215913572 - MIR SINE MIR -54 208 21 2166 112 34 0 chr1 26751255 26751550 -215912803 + AluSx SINE Alu 1 305 -7 293 221 44 0 chr1 26751570 26751638 -215912715 - L2 LINE L2 -2 3311 3241 221 282 55 82 chr1 26752169 26752279 -215912074 + MIR SINE MIR 16 122 -140 670 232 43 0 chr1 26752549 26752713 -215911640 + MIR SINE MIR 92 262 0 284 335 128 28 chr1 26752710 26753134 -215911219 - L2 LINE L2 -19 3253 2775 * 486 285 35 6 chr1 26753153 26753327 -215911026 - MIR SINE MIR -15 247 70 919 144 43 53 chr1 26753357 26753415 -215910938 - MER5A DNA MER1_type 0 189 132 1816 153 87 0 chr1 26753415 26753702 -215910651 + AluJb SINE Alu 1 312 0 919 144 43 53 chr1 26753702 26753830 -215910523 - MER5A DNA MER1_type -57 132 5 182 292 77 0 chr1 26753857 26753922 -215910431 + MIR SINE MIR 119 188 -74 2417 98 0 3 chr1 26754559 26754866 -215909487 + AluSx SINE Alu 1 306 -6 238 243 84 56 chr1 26754975 26755082 -215909271 + L2 LINE L2 2954 3063 -209 27 29 0 0 chr1 26755087 26755121 -215909232 + AT_rich Low_complexity Low_complexity 1 34 0 315 243 0 14 chr1 26755176 26755250 -215909103 + L2 LINE L2 3223 3295 -18 226 214 92 92 chr1 26756508 26756639 -215907714 - MIR3 SINE MIR -16 192 62 2427 82 0 0 chr1 26757067 26757361 -215906992 - AluY SINE Alu -17 294 1 681 183 0 0 chr1 26757385 26757500 -215906853 - FLAM_C SINE Alu -18 115 1 240 380 63 7 chr1 26757577 26757719 -215906634 - L2 LINE L2 0 3313 3164 2010 139 26 19 chr1 26757958 26758138 -215906215 - AluJb SINE Alu 0 312 128 2342 105 0 3 chr1 26758138 26758443 -215905910 - AluSg SINE Alu -6 304 1 2010 139 26 19 chr1 26758443 26758572 -215905781 - AluJb SINE Alu -184 128 1 2393 108 0 0 chr1 26759284 26759589 -215904764 - AluSg SINE Alu -4 306 2 548 177 0 0 chr1 26759633 26759729 -215904624 - AluJ/FLAM SINE Alu -215 97 2 339 257 28 18 chr1 26759732 26759841 -215904512 + MIR SINE MIR 101 210 -52 601 220 28 92 chr1 26760045 26760107 -215904246 - MIR SINE MIR -6 256 192 1021 166 0 0 chr1 26760107 26760270 -215904083 - FRAM SINE Alu -2 164 2 601 220 28 92 chr1 26760270 26760457 -215903896 - MIR SINE MIR -70 192 23 316 141 99 28 chr1 26760453 26760524 -215903829 + MIR SINE MIR 79 154 -108 * 223 303 0 15 chr1 26761125 26761191 -215903162 + MIR SINE MIR 30 94 -168 316 273 75 128 chr1 26761560 26761842 -215902511 - L1ME4a LINE L1 -121 6000 5734 1613 245 90 60 chr1 26761879 26761922 -215902431 - L1ME3A LINE L1 -2 6160 6120 1835 109 74 4 chr1 26761922 26762179 -215902174 + AluSq SINE Alu 24 298 -15 1613 245 90 60 chr1 26762179 26762985 -215901368 - L1ME3A LINE L1 -42 6120 5315 804 182 73 6 chr1 26763509 26763674 -215900679 - MLT1A2 LTR MaLR -28 362 187 237 258 0 0 chr1 26763678 26763696 -215900657 + GA-rich Low_complexity Low_complexity 2 19 -48 3145 175 22 65 chr1 26763696 26764417 -215899936 - LTR8 LTR ERV1 -1 690 1 237 258 0 0 chr1 26764417 26764464 -215899889 + GA-rich Low_complexity Low_complexity 18 67 0 1860 149 6 38 chr1 26764469 26764784 -215899569 - AluJo SINE Alu -3 309 5 941 145 31 6 chr1 26764816 26764975 -215899378 - MLT1A2 LTR MaLR -211 163 1 627 193 93 21 chr1 26764985 26765125 -215899228 + MIR SINE MIR 70 219 -43 2708 156 36 45 chr1 26765133 26765492 -215898861 + MLT1F LTR MaLR 11 372 -170 315 0 0 0 chr1 26765492 26765527 -215898826 + (TA)n Simple_repeat Simple_repeat 1 35 0 1998 147 19 3 chr1 26765531 26765838 -215898515 - AluJo SINE Alu 0 312 1 2708 156 36 45 chr1 26765838 26766000 -215898353 + MLT1F LTR MaLR 375 532 -10 347 338 19 13 chr1 26766202 26766356 -215897997 - MIR3 SINE MIR -8 200 46 295 350 61 12 chr1 26767184 26767347 -215897006 - MIR3 SINE MIR -28 180 10 2103 111 17 10 chr1 26767421 26767719 -215896634 + AluSx SINE Alu 1 300 -12 289 232 112 107 chr1 26767719 26767840 -215896513 + MIR SINE MIR 24 148 -114 1234 72 17 0 chr1 26767840 26768020 -215896333 + L1MA8 LINE L1 6106 6288 -3 289 232 112 107 chr1 26768020 26768122 -215896231 + MIR SINE MIR 148 248 -14 222 244 151 12 chr1 26768279 26768365 -215895988 + MIR SINE MIR 57 154 -108 286 136 0 0 chr1 26768466 26768510 -215895843 + Alu SINE Alu 252 295 -7 322 280 61 0 chr1 26768514 26768646 -215895707 + L1MC5 LINE L1 7649 7788 -173 849 142 8 0 chr1 26768655 26768789 -215895564 + AluSg/x SINE Alu 175 309 0 2237 118 0 10 chr1 26768797 26769093 -215895260 + AluSx SINE Alu 1 293 -19 2489 93 0 0 chr1 26769112 26769424 -215894929 + AluSq SINE Alu 1 312 -1 273 161 35 58 chr1 26769459 26769546 -215894807 + L1MC5 LINE L1 7845 7929 -32 623 286 35 15 chr1 26769694 26769897 -215894456 + MIR SINE MIR 43 249 -13 555 254 17 35 chr1 26769910 26770083 -215894270 + MIR SINE MIR 22 191 -71 246 293 51 70 chr1 26770180 26770337 -215894016 + L2 LINE L2 1129 1282 -2032 180 97 0 0 chr1 26770617 26770648 -215893705 + (A)n Simple_repeat Simple_repeat 1 31 0 2419 78 3 0 chr1 26770650 26770943 -215893410 + AluSc SINE Alu 2 295 -14 2045 145 3 14 chr1 26771040 26771337 -215893016 - AluJb SINE Alu -18 294 1 399 297 133 0 chr1 26771337 26771465 -215892888 - L2 LINE L2 -12 3260 3116 533 297 46 42 chr1 26771507 26771790 -215892563 - L2 LINE L2 -814 2500 2217 1023 285 155 12 chr1 26771815 26772306 -215892047 - MLT1L LTR MaLR -12 603 43 707 314 18 4 chr1 26772367 26772593 -215891760 + MIR SINE MIR 20 248 -14 2229 125 0 7 chr1 26772924 26773228 -215891125 + AluSx SINE Alu 1 302 -10 2240 131 0 0 chr1 26773391 26773696 -215890657 - AluSc SINE Alu 0 309 5 202 258 106 83 chr1 26773711 26773843 -215890510 + L2 LINE L2 3137 3271 -1 2305 107 0 7 chr1 26773860 26774181 -215890172 - AluSq SINE Alu 0 313 1 249 281 53 18 chr1 26774181 26774295 -215890058 + MIR3 SINE MIR 70 187 -21 470 132 0 0 chr1 26774512 26774588 -215889765 + AluSg/x SINE Alu 172 247 -63 224 246 97 90 chr1 26774595 26774729 -215889624 + L2 LINE L2 3137 3271 -1 366 293 87 5 chr1 26775917 26776098 -215888255 - MIR SINE MIR -39 223 30 650 226 18 24 chr1 26776870 26777034 -215887319 - MIR SINE MIR -71 191 29 1548 174 73 0 chr1 26777122 26777397 -215886956 + AluJb SINE Alu 1 295 -17 2263 97 0 0 chr1 26777405 26777688 -215886665 + AluSx SINE Alu 1 284 -24 222 0 79 0 chr1 26777688 26777726 -215886627 + (CA)n Simple_repeat Simple_repeat 2 42 0 692 251 51 15 chr1 26778057 26778252 -215886101 - MIR SINE MIR -2 260 59 2250 133 0 0 chr1 26778271 26778580 -215885773 - AluSx SINE Alu -3 309 1 1054 96 0 0 chr1 26778580 26778715 -215885638 - AluSq/x SINE Alu -177 135 1 737 194 38 6 chr1 26779481 26779672 -215884681 + AluJo SINE Alu 119 314 0 1861 134 72 3 chr1 26779672 26779962 -215884391 + AluSx SINE Alu 1 310 -2 238 295 0 0 chr1 26780237 26780298 -215884055 - MIR SINE MIR -143 119 59 2446 95 0 6 chr1 26780428 26780743 -215883610 - AluSp SINE Alu 0 313 1 388 287 35 14 chr1 26780749 26780892 -215883461 - L2 LINE L2 0 3313 3168 426 238 30 0 chr1 26780956 26781057 -215883296 + MIR SINE MIR 38 141 -67 431 77 15 0 chr1 26781257 26781322 -215883031 - FRAM SINE Alu -85 91 26 215 252 128 2 chr1 26782099 26782200 -215882153 + MIR SINE MIR 55 147 -61 327 318 9 0 chr1 26782615 26782725 -215881628 - L2 LINE L2 0 3313 3203 433 243 164 13 chr1 26782806 26782958 -215881395 - MER5A DNA MER1_type -6 183 9 2292 97 7 3 chr1 26783407 26783705 -215880648 + AluSg SINE Alu 1 299 -11 408 303 12 31 chr1 26784392 26784554 -215879799 + MIR SINE MIR 51 209 -53 315 191 117 11 chr1 26784584 26784678 -215879675 - L2 LINE L2 -10 3303 3200 217 333 0 12 chr1 26784719 26784800 -215879553 - L2 LINE L2 -5 3267 3188 2386 102 0 13 chr1 26785825 26786130 -215878223 + AluSx SINE Alu 1 301 -11 205 255 0 0 chr1 26786155 26786202 -215878151 + L2 LINE L2 3248 3294 -19 389 303 29 77 chr1 26786244 26786452 -215877901 + MIR SINE MIR 20 217 -45 2325 108 3 3 chr1 26787077 26787384 -215876969 + AluSp SINE Alu 1 307 -6 231 245 0 0 chr1 26787446 26787495 -215876858 + MIR SINE MIR 103 151 -111 627 261 78 17 chr1 26787497 26787677 -215876676 - MIR SINE MIR -3 259 69 286 308 0 0 chr1 26787718 26787796 -215876557 + MIR SINE MIR 175 252 -10 2370 99 0 3 chr1 26787901 26788203 -215876150 - AluSq SINE Alu -12 301 1 260 242 45 15 chr1 26789029 26789095 -215875258 - L2 LINE L2 -1 3271 3204 207 0 0 0 chr1 26789333 26789356 -215874997 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1807 107 111 7 chr1 26789366 26789636 -215874717 + AluSg SINE Alu 1 298 -12 1815 155 10 17 chr1 26789644 26789941 -215874412 + AluJo SINE Alu 1 295 -17 559 254 18 100 chr1 26789950 26790126 -215874227 + MER102b DNA MER1_type 78 224 -1204 2479 71 3 7 chr1 26790126 26790434 -215873919 + AluSq SINE Alu 6 312 -1 559 254 18 100 chr1 26790434 26790536 -215873817 + MER102b DNA MER1_type 224 333 -8 349 283 100 0 chr1 26790588 26790708 -215873645 + MIR SINE MIR 106 237 -25 3036 110 88 52 chr1 26791867 26791917 -215872436 - MER39B LTR ERV1 -28 625 578 2391 99 3 0 chr1 26791917 26792221 -215872132 + AluSq SINE Alu 1 305 -8 3036 110 88 52 chr1 26792221 26792769 -215871584 - MER39B LTR ERV1 -75 578 5 288 250 64 43 chr1 26793813 26793953 -215870400 - L1ME3A LINE L1 -24 6146 6004 2372 99 0 3 chr1 26794561 26794863 -215869490 - AluSq SINE Alu -12 301 1 490 219 95 18 chr1 26794869 26795038 -215869315 - L1MC5 LINE L1 -54 7907 7726 1446 121 36 31 chr1 26795069 26795293 -215869060 + AluSg/x SINE Alu 77 301 -9 309 194 32 0 chr1 26795324 26795386 -215868967 + MER5A DNA MER1_type 39 102 -87 242 326 10 10 chr1 26795387 26795485 -215868868 + MER5A DNA MER1_type 66 163 -26 * 362 229 10 10 chr1 26795399 26795495 -215868858 - MER5A DNA MER1_type -66 123 28 2453 103 0 0 chr1 26796501 26796813 -215867540 + AluSx SINE Alu 1 312 0 2393 103 0 3 chr1 26796817 26797127 -215867226 + AluSq SINE Alu 1 309 -4 22 0 0 0 chr1 26797153 26797175 -215867178 + AT_rich Low_complexity Low_complexity 1 22 0 1834 172 7 16 chr1 26797297 26797605 -215866748 - AluJb SINE Alu -7 305 1 2227 109 0 17 chr1 26797615 26797917 -215866436 - AluSx SINE Alu -15 297 1 2483 63 7 3 chr1 26798010 26798313 -215866040 - AluY SINE Alu -7 304 1 483 274 87 28 chr1 26798486 26798718 -215865635 + MIR SINE MIR 15 260 -2 189 74 0 0 chr1 26799474 26799501 -215864852 + (CGG)n Simple_repeat Simple_repeat 3 29 0 329 248 50 10 chr1 26800113 26800214 -215864139 - MIR SINE MIR -35 227 123 692 228 47 29 chr1 26800641 26800812 -215863541 - MER69A DNA AcHobo -1 176 3 994 233 97 109 chr1 26800946 26801264 -215863089 + L1MC4a LINE L1 5519 5839 -1969 2309 87 0 0 chr1 26801264 26801562 -215862791 + AluSx SINE Alu 1 298 -14 994 233 97 109 chr1 26801562 26801956 -215862397 + L1MC4a LINE L1 5839 6222 -1586 1120 189 39 39 chr1 26802020 26802056 -215862297 - AluJo SINE Alu -9 303 268 2277 82 0 10 chr1 26802056 26802362 -215861991 + AluY SINE Alu 1 303 -8 1120 189 39 39 chr1 26802362 26802503 -215861850 - AluJo SINE Alu -44 268 123 2378 64 3 0 chr1 26802503 26802799 -215861554 + AluY SINE Alu 1 297 -14 1120 189 39 39 chr1 26802799 26802906 -215861447 - AluJo SINE Alu -188 124 18 552 261 82 19 chr1 26802938 26803184 -215861169 + L1MC4 LINE L1 6333 6562 -1329 2189 110 0 0 chr1 26803184 26803485 -215860868 + AluSx SINE Alu 1 301 -11 552 261 82 19 chr1 26803485 26803602 -215860751 + L1MC4 LINE L1 6562 6814 -1077 189 0 0 0 chr1 26803935 26803956 -215860397 + (A)n Simple_repeat Simple_repeat 1 21 0 2066 124 0 34 chr1 26803956 26804279 -215860074 + AluSx SINE Alu 1 312 0 252 252 194 68 chr1 26804284 26804562 -215859791 + L1MC5 LINE L1 7299 7625 -336 1842 125 13 32 chr1 26804562 26804875 -215859478 + AluSx SINE Alu 6 312 0 252 252 194 68 chr1 26804875 26804921 -215859432 + L1MC5 LINE L1 7625 7664 -297 517 259 196 2 chr1 26806066 26806275 -215858078 - MIR SINE MIR 0 262 13 425 252 87 0 chr1 26807130 26807245 -215857108 + MIR3 SINE MIR 76 200 -8 218 300 101 10 chr1 26807257 26807362 -215856991 - MIR3 SINE MIR -53 155 70 458 279 109 20 chr1 26809241 26809388 -215854965 - MER117 DNA MER1_type -31 166 7 267 217 0 0 chr1 26809399 26809459 -215854894 - MIR SINE MIR -68 140 81 764 113 0 0 chr1 26809761 26809867 -215854486 + AluJb SINE Alu 200 305 -7 182 315 123 14 chr1 26809869 26809942 -215854411 + MIR SINE MIR 30 110 -152 273 324 49 10 chr1 26810189 26810291 -215854062 - MIR3 SINE MIR -9 199 94 458 255 72 20 chr1 26811206 26811359 -215852994 + MIR3 SINE MIR 30 190 -18 429 288 65 6 chr1 26811834 26812004 -215852349 - MIR3 SINE MIR -22 186 7 267 260 51 102 chr1 26812255 26812337 -215852016 + L2 LINE L2 2925 2995 -277 1693 155 35 0 chr1 26812337 26812621 -215851732 - AluJb SINE Alu -18 294 1 267 260 51 102 chr1 26812621 26812715 -215851638 + L2 LINE L2 2995 3092 -180 728 182 101 76 chr1 26812735 26812933 -215851420 - MIR SINE MIR 0 262 60 354 303 66 0 chr1 26812988 26813110 -215851243 + L2 LINE L2 3136 3265 -7 347 306 69 74 chr1 26813111 26813327 -215851026 + L3 LINE CR1 1297 1511 -66 873 171 116 68 chr1 26813468 26813602 -215850751 + ORSL DNA AcHobo 2 128 -147 2239 108 0 0 chr1 26813602 26813897 -215850456 + AluSx SINE Alu 2 296 -16 873 171 116 68 chr1 26813897 26813922 -215850431 + ORSL DNA AcHobo 128 150 -125 1655 165 64 14 chr1 26813922 26814219 -215850134 - AluJb SINE Alu 0 312 1 873 171 116 68 chr1 26814219 26814309 -215850044 + ORSL DNA AcHobo 150 264 -11 288 283 36 48 chr1 26814330 26814560 -215849793 + L1MC4a LINE L1 2286 6173 -1 218 284 74 0 chr1 26814617 26814698 -215849655 + MIR SINE MIR 14 100 -162 480 247 82 19 chr1 26814725 26814883 -215849470 + MIR SINE MIR 84 251 -11 223 294 44 0 chr1 26816090 26816158 -215848195 - L3b LINE CR1 -188 1395 1325 213 339 191 11 chr1 26816282 26816471 -215847882 + MIR SINE MIR 29 251 -11 279 300 77 23 chr1 26816508 26816638 -215847715 - L3b LINE CR1 -104 1479 1343 302 322 81 23 chr1 26817628 26817802 -215846551 - MIR3 SINE MIR -22 186 3 451 88 0 0 chr1 26868168 26868225 -215796128 - Alu SINE Alu -260 58 2 554 335 30 6 chr1 26869228 26869395 -215794958 + MIR SINE MIR 48 218 -44 242 282 51 92 chr1 26869498 26869693 -215794660 - L2 LINE L2 -314 2958 2774 495 0 0 0 chr1 26869740 26869795 -215794558 + (TA)n Simple_repeat Simple_repeat 2 56 0 322 244 33 22 chr1 26869840 26869930 -215794423 + MIR SINE MIR 16 106 -102 587 285 43 5 chr1 26869931 26870138 -215794215 - LTR16C LTR ERVL -1 490 276 698 108 0 0 chr1 26870153 26870246 -215794107 + FRAM SINE Alu 54 146 -30 189 147 0 0 chr1 26870254 26870288 -215794065 + (GGGAA)n Simple_repeat Simple_repeat 4 37 0 298 250 14 0 chr1 26870307 26870379 -215793974 - L2 LINE L2 -229 3084 3012 364 241 117 22 chr1 26870383 26870520 -215793833 - MIR SINE MIR -4 258 109 550 96 14 0 chr1 26870623 26870696 -215793657 - AluS SINE Alu -238 75 2 431 205 162 0 chr1 26871057 26871174 -215793179 + MER69 DNA AcHobo 1 136 -2390 1639 122 125 21 chr1 26871177 26871456 -215792897 - AluSg SINE Alu -2 308 1 417 134 30 0 chr1 26871460 26871527 -215792826 + MER69 DNA AcHobo 2456 2524 -2 809 229 39 0 chr1 26871568 26871747 -215792606 - MIR SINE MIR -60 202 17 2191 124 27 0 chr1 26871853 26872152 -215792201 - AluSc SINE Alu -2 307 1 2592 184 24 20 chr1 26872244 26872787 -215791566 + MER90 LTR ERV1 70 614 0 256 286 68 68 chr1 26872847 26873067 -215791286 + L1ME3 LINE L1 5943 6162 0 1788 135 54 0 chr1 26873085 26873345 -215791008 + AluSx SINE Alu 7 280 -32 318 310 34 116 chr1 26874532 26874800 -215789553 + L2 LINE L2 2958 3203 -69 494 216 61 13 chr1 26875905 26876081 -215788272 + MIR SINE MIR 28 207 -55 432 248 35 120 chr1 26876779 26876833 -215787520 - MIR SINE MIR -51 211 154 2082 60 0 15 chr1 26876833 26877098 -215787255 - AluY SINE Alu -17 294 34 432 248 35 120 chr1 26877098 26877115 -215787238 - MIR SINE MIR -108 154 137 1663 193 0 30 chr1 26877115 26877415 -215786938 - AluJb SINE Alu -21 291 1 432 248 35 120 chr1 26877415 26877540 -215786813 - MIR SINE MIR -125 137 34 194 277 31 15 chr1 26877760 26877825 -215786528 - L2 LINE L2 -4 3309 3244 341 213 265 7 chr1 26877987 26878123 -215786230 - MER5A DNA MER1_type 0 189 19 609 276 71 10 chr1 26878879 26879062 -215785291 - MIR SINE MIR -6 256 64 1853 127 42 7 chr1 26879062 26879346 -215785007 + AluJb SINE Alu 6 299 -13 254 320 124 10 chr1 26879987 26880084 -215784269 + MIR SINE MIR 33 140 -68 200 316 0 0 chr1 26880122 26880179 -215784174 + MIR3 SINE MIR 143 199 -9 582 314 80 50 chr1 26880279 26880741 -215783612 - MLT1K LTR MaLR 0 476 1 698 247 97 16 chr1 26880780 26880966 -215783387 + MIR SINE MIR 37 237 -25 827 160 0 0 chr1 26881258 26881383 -215782970 + FLAM_C SINE Alu 1 125 -18 392 241 196 0 chr1 26881459 26881571 -215782782 + MIR SINE MIR 12 145 -117 2028 133 13 0 chr1 26881573 26881874 -215782479 - AluSx SINE Alu -7 305 1 33 0 0 0 chr1 26881874 26881907 -215782446 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr1 26882126 26882147 -215782206 + (A)n Simple_repeat Simple_repeat 1 21 0 215 31 31 0 chr1 26882237 26882269 -215782084 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2146 128 0 0 chr1 26882273 26882562 -215781791 - AluSx SINE Alu -23 289 1 1938 125 0 72 chr1 26882629 26882949 -215781404 - AluJo SINE Alu -15 297 1 805 184 0 7 chr1 26882949 26883085 -215781268 - AluJo SINE Alu -177 135 1 547 254 41 75 chr1 26883127 26883272 -215781081 + MIR SINE MIR 1 134 -128 2166 121 20 0 chr1 26883272 26883569 -215780784 + AluSx SINE Alu 1 303 -9 547 254 41 75 chr1 26883569 26883691 -215780662 + MIR SINE MIR 134 259 -3 2382 97 0 0 chr1 26883834 26884144 -215780209 - AluSx SINE Alu -2 310 1 427 281 34 27 chr1 26884146 26884292 -215780061 - MIR3 SINE MIR -61 147 1 322 238 163 81 chr1 26884629 26884666 -215779687 - MIR3 SINE MIR -11 197 164 2229 119 10 7 chr1 26884666 26884976 -215779377 + AluSx SINE Alu 1 311 -1 322 238 163 81 chr1 26884976 26885098 -215779255 - MIR3 SINE MIR -44 164 25 366 230 26 80 chr1 26885271 26885384 -215778969 + MIR SINE MIR 2 108 -154 * 469 317 14 0 chr1 26885381 26885526 -215778827 - MIR SINE MIR 0 262 116 2464 90 0 0 chr1 26885550 26885849 -215778504 - AluSg SINE Alu -11 299 1 1848 148 14 3 chr1 26885993 26886277 -215778076 - AluJb SINE Alu -25 287 1 475 167 0 0 chr1 26886279 26886357 -215777996 - AluJo SINE Alu -5 307 230 2589 128 54 76 chr1 26886357 26886858 -215777495 - LTR2B LTR ERV1 0 490 1 688 141 0 25 chr1 26886858 26886979 -215777374 - Harlequin LTR ERV1 0 6896 6779 * 2999 92 7 26 chr1 26886973 26887429 -215776924 - Harlequin LTR ERV1 -1186 5710 5264 605 191 0 0 chr1 26887431 26887525 -215776828 - AluJo SINE Alu -84 228 135 * 622 157 0 0 chr1 26887521 26887623 -215776730 - AluJo SINE Alu -209 103 2 442 229 14 36 chr1 26887930 26888070 -215776283 - HAL1 LINE L1 -898 1609 1473 2241 120 0 0 chr1 26888101 26888401 -215775952 - AluSx SINE Alu -12 300 1 1969 130 33 7 chr1 26888493 26888794 -215775559 + AluSc SINE Alu 1 309 0 687 128 6 2 chr1 26888840 26889007 -215775346 + MSTC LTR MaLR 231 428 0 1735 184 27 32 chr1 26890437 26890806 -215773547 - MLT1A2 LTR MaLR 0 374 8 656 250 50 144 chr1 26890807 26890983 -215773370 - L1ME4a LINE L1 -21 6100 5909 2158 101 21 0 chr1 26890983 26891270 -215773083 + AluSq SINE Alu 1 293 -20 656 250 50 144 chr1 26891270 26891529 -215772824 - L1ME4a LINE L1 -212 5909 5706 1037 142 103 71 chr1 26891536 26891616 -215772737 + L1MD2 LINE L1 6057 6133 -226 264 30 0 0 chr1 26891616 26891649 -215772704 + (CA)n Simple_repeat Simple_repeat 2 34 0 1037 142 103 71 chr1 26891649 26891788 -215772565 + L1MD2 LINE L1 6133 6289 -70 2350 108 0 10 chr1 26891788 26891966 -215772387 - AluSp SINE Alu -2 311 136 2541 64 0 3 chr1 26891966 26892264 -215772089 - AluY SINE Alu -14 297 1 2350 108 0 10 chr1 26892264 26892399 -215771954 - AluSp SINE Alu -177 136 1 1037 142 103 71 chr1 26892399 26892460 -215771893 + L1MD2 LINE L1 6289 6347 -12 1829 171 0 36 chr1 26892461 26892765 -215771588 + AluJo SINE Alu 1 293 -19 2366 100 0 0 chr1 26892767 26893066 -215771287 + AluSx SINE Alu 1 299 -13 2191 106 3 13 chr1 26893779 26894081 -215770272 - AluSx SINE Alu -13 299 1 200 280 120 0 chr1 26894222 26894297 -215770056 - MIR SINE MIR -2 260 177 1925 152 17 0 chr1 26894367 26894669 -215769684 + AluJb SINE Alu 1 307 -5 429 243 160 42 chr1 26895145 26895289 -215769064 - L2 LINE L2 0 3313 3153 883 147 0 0 chr1 26895818 26895947 -215768406 - FLAM_C SINE Alu -14 129 1 352 241 13 13 chr1 26896798 26896877 -215767476 + MIR SINE MIR 36 114 -148 198 273 18 18 chr1 26896909 26896964 -215767389 + MIR SINE MIR 196 250 -12 2128 80 40 0 chr1 26897233 26897532 -215766821 - AluSq SINE Alu -2 311 1 1524 170 33 26 chr1 26898157 26898463 -215765890 - AluJo SINE Alu 0 312 5 443 110 0 14 chr1 26898540 26898613 -215765740 - Alu SINE Alu -238 73 2 1862 117 37 0 chr1 26898767 26899099 -215765254 - AluSx SINE Alu 0 345 4 414 200 0 0 chr1 26899140 26899205 -215765148 + L2 LINE L2 3249 3313 0 2268 91 0 3 chr1 26899233 26899529 -215764824 + AluSp SINE Alu 1 295 -18 488 324 85 27 chr1 26899804 26900097 -215764256 + L2 LINE L2 3000 3309 -4 255 204 0 0 chr1 26900122 26900171 -215764182 - L2 LINE L2 -2 3270 3222 329 259 224 0 chr1 26900339 26900455 -215763898 - L2 LINE L2 -6 3307 3166 337 218 103 73 chr1 26900763 26900907 -215763446 - MIR SINE MIR -65 197 46 2278 76 0 32 chr1 26900907 26901221 -215763132 + AluSg SINE Alu 1 304 -6 337 218 103 73 chr1 26901221 26901241 -215763112 - MIR SINE MIR -216 46 28 510 241 14 28 chr1 26901304 26901445 -215762908 - MLT1J LTR MaLR 0 511 373 510 328 113 9 chr1 26901613 26901842 -215762511 - MIR SINE MIR -6 256 4 388 224 24 0 chr1 26902261 26902346 -215762007 - MLT1K LTR MaLR -2 586 500 1048 172 0 0 chr1 26902486 26902655 -215761698 - AluJb SINE Alu -10 302 134 1790 154 23 3 chr1 26902655 26902954 -215761399 - AluJo SINE Alu -7 305 1 670 230 116 81 chr1 26903748 26904018 -215760335 - MLT1K LTR MaLR -1 475 181 2183 95 7 0 chr1 26904018 26904322 -215760031 - AluSq SINE Alu -6 307 2 670 230 116 81 chr1 26904322 26904508 -215759845 - MLT1K LTR MaLR -295 181 3 234 302 66 11 chr1 26904769 26904951 -215759402 - L1ME4a LINE L1 -113 6008 5817 492 127 14 0 chr1 26904959 26905030 -215759323 - FLAM_A SINE Alu -19 123 52 1511 150 114 4 chr1 26905049 26905322 -215759031 - AluJb SINE Alu -5 307 5 325 261 54 54 chr1 26905340 26905451 -215758902 + L1MC4 LINE L1 6559 6669 -1373 2058 90 50 0 chr1 26905459 26905736 -215758617 + AluSc SINE Alu 1 291 -18 398 320 80 7 chr1 26905784 26905934 -215758419 - MIR SINE MIR -79 183 23 1748 136 7 37 chr1 26906153 26906276 -215758077 + AluSx SINE Alu 14 139 -173 2241 90 0 7 chr1 26906276 26906576 -215757777 + AluSq SINE Alu 1 298 -15 1748 136 7 37 chr1 26906576 26906747 -215757606 + AluSx SINE Alu 139 299 -13 1151 237 59 28 chr1 26906817 26907172 -215757181 + L1MC/D LINE L1 5418 5783 -2025 1043 289 110 12 chr1 26907177 26907585 -215756768 - MLT1J2 LTR MaLR 0 450 3 1916 138 7 13 chr1 26908393 26908698 -215755655 - AluJo SINE Alu -9 303 1 2379 11 81 0 chr1 26908768 26909052 -215755301 + AluY SINE Alu 1 307 -4 1330 278 147 29 chr1 26909428 26909622 -215754731 - L2 LINE L2 -1 3312 3142 1617 171 23 26 chr1 26909622 26909927 -215754426 + AluJo SINE Alu 1 304 -8 1330 278 147 29 chr1 26909927 26910467 -215753886 - L2 LINE L2 -171 3142 2453 1770 145 26 16 chr1 26910467 26910771 -215753582 - AluJo SINE Alu -5 307 1 1330 278 147 29 chr1 26910771 26910874 -215753479 - L2 LINE L2 -860 2453 2364 367 221 336 0 chr1 26911002 26911115 -215753238 + L2 LINE L2 3122 3272 0 473 308 173 28 chr1 26913085 26913299 -215751054 + MIR SINE MIR 2 246 -16 188 286 0 0 chr1 26913266 26913308 -215751045 + L2 LINE L2 3259 3300 -13 * 1704 172 0 7 chr1 26913672 26913988 -215750365 + AluJo SINE Alu 3 312 0 305 210 86 0 chr1 26914009 26914090 -215750263 + MIR SINE MIR 58 145 -117 487 338 45 64 chr1 26914915 26915178 -215749175 - L3 LINE CR1 -213 1364 1097 1697 157 7 13 chr1 26915178 26915478 -215748875 + AluJb SINE Alu 1 298 -14 487 338 45 64 chr1 26915478 26915567 -215748786 - L3 LINE CR1 -480 1097 1008 2011 96 0 38 chr1 26915567 26915883 -215748470 - AluSx SINE Alu 0 305 1 487 338 45 64 chr1 26915883 26915998 -215748355 - L3 LINE CR1 -569 1008 904 709 318 50 12 chr1 26916393 26916635 -215747718 - MIR SINE MIR -10 252 2 347 316 98 50 chr1 26916802 26917160 -215747193 - L2 LINE L2 -344 2970 2596 968 185 0 0 chr1 26917173 26917335 -215747018 + AluJb SINE Alu 136 297 -15 2835 224 234 15 chr1 26917575 26917875 -215746478 + L2 LINE L2 1293 1526 -1788 252 0 0 0 chr1 26917875 26917903 -215746450 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1935 114 4 4 chr1 26917904 26918184 -215746169 - AluSx SINE Alu -32 280 1 2835 224 234 15 chr1 26918184 26919005 -215745348 + L2 LINE L2 1525 2662 -652 2148 69 0 4 chr1 26919017 26919293 -215745060 - AluY SINE Alu -11 300 26 5325 133 22 77 chr1 26919293 26920224 -215744129 - L1PB4 LINE L1 -8 6148 5336 2220 110 0 7 chr1 26920224 26920533 -215743820 - AluSx SINE Alu -5 307 1 5325 133 22 77 chr1 26920533 26921508 -215742845 - L1PB4 LINE L1 -820 5336 4309 807 165 0 0 chr1 26921514 26921641 -215742712 - FLAM_C SINE Alu -4 129 3 251 145 0 113 chr1 26921652 26921714 -215742639 - L1PB4 LINE L1 -1819 4327 4273 757 96 29 0 chr1 26921766 26921870 -215742483 - U6 snRNA snRNA 0 107 1 1405 239 63 45 chr1 26921875 26922266 -215742087 + L2 LINE L2 2665 3056 -257 2179 99 7 0 chr1 26922266 26922568 -215741785 + AluSc SINE Alu 1 304 -5 1405 239 63 45 chr1 26922568 26922829 -215741524 + L2 LINE L2 3056 3311 -2 217 341 61 0 chr1 26922841 26922923 -215741430 - L2 LINE L2 -18 3295 3209 1582 169 20 10 chr1 26923230 26923526 -215740827 - AluJo SINE Alu -13 299 1 725 284 5 31 chr1 26923542 26923764 -215740589 + MIR SINE MIR 47 262 0 263 196 0 0 chr1 26924915 26924961 -215739392 + Alu SINE Alu 249 294 -8 2255 98 3 3 chr1 26924961 26925268 -215739085 + AluSx SINE Alu 1 307 -5 24 0 0 0 chr1 26925268 26925292 -215739061 + AT_rich Low_complexity Low_complexity 1 24 0 433 323 99 12 chr1 26925916 26926077 -215738276 + MIR SINE MIR 18 192 -70 631 267 53 22 chr1 26926085 26926310 -215738043 - L1M4 LINE L1 -3250 2896 2665 2054 133 0 7 chr1 26926341 26926643 -215737710 - AluSx SINE Alu -12 300 1 1292 254 48 33 chr1 26927129 26927460 -215736893 - MLT1I LTR MaLR 0 409 74 1076 53 0 0 chr1 26928002 26928134 -215736219 - AluY SINE Alu -179 132 1 346 285 96 20 chr1 26928667 26928846 -215735507 - MIR SINE MIR -29 233 45 2242 94 0 0 chr1 26928851 26929149 -215735204 - AluSq SINE Alu -15 298 1 979 143 30 0 chr1 26929154 26929322 -215735031 - AluJb SINE Alu -7 305 133 1652 160 7 14 chr1 26929593 26929886 -215734467 - AluJb SINE Alu -7 305 15 774 290 107 0 chr1 26929891 26930115 -215734238 + MIR SINE MIR 13 260 -2 333 155 0 0 chr1 26930220 26930278 -215734075 + CT-rich Low_complexity Low_complexity 3 60 0 873 154 23 0 chr1 26930296 26930471 -215733882 + CT-rich Low_complexity Low_complexity 2 180 0 1568 151 21 32 chr1 26930477 26930756 -215733597 - AluJo SINE Alu -36 276 1 277 238 24 189 chr1 26931479 26931727 -215732626 + MIR3 SINE MIR 1 207 -1 2249 112 0 0 chr1 26931787 26932099 -215732254 - AluSx SINE Alu 0 312 1 2049 84 4 0 chr1 26932232 26932495 -215731858 - AluSx SINE Alu -48 264 1 404 280 78 47 chr1 26933193 26933386 -215730967 + MIR SINE MIR 34 232 -30 659 277 104 0 chr1 26933445 26933647 -215730706 - MIR SINE MIR -15 247 25 2095 110 7 0 chr1 26933660 26933951 -215730402 - AluSx SINE Alu -19 293 1 347 251 15 143 chr1 26934291 26934348 -215730005 + MER5B DNA MER1_type 2 65 -113 1928 136 0 14 chr1 26934348 26934657 -215729696 + AluSx SINE Alu 1 305 0 347 251 15 143 chr1 26934657 26934801 -215729552 + MER5B DNA MER1_type 65 178 0 2238 99 0 0 chr1 26934825 26935127 -215729226 - AluSg SINE Alu -8 302 1 356 259 301 7 chr1 26935172 26935315 -215729038 - MIR3 SINE MIR -1 207 23 1038 167 22 0 chr1 26935428 26935608 -215728745 - AluJo SINE Alu -12 300 117 625 215 22 7 chr1 26935944 26936079 -215728274 + MER5B DNA MER1_type 42 178 0 2066 203 81 40 chr1 26936093 26936407 -215727946 - MLT1F LTR MaLR -54 488 147 2071 116 0 28 chr1 26936407 26936725 -215727628 + AluSg SINE Alu 2 310 0 2066 203 81 40 chr1 26936725 26936879 -215727474 - MLT1F LTR MaLR -395 147 1 651 256 17 6 chr1 26937093 26937265 -215727088 + MER5B DNA MER1_type 1 174 -4 1952 109 11 0 chr1 26937496 26937772 -215726581 + AluSq SINE Alu 11 289 -24 1010 144 0 0 chr1 26938783 26938943 -215725410 - AluSg/x SINE Alu -16 296 137 828 101 0 0 chr1 26939278 26939387 -215724966 + AluSp/q SINE Alu 173 281 -32 1028 102 28 0 chr1 26939387 26939640 -215724713 + GA-rich Low_complexity Low_complexity 1 260 0 242 257 99 50 chr1 26939645 26939746 -215724607 + MIR SINE MIR 157 262 0 320 222 56 21 chr1 26939772 26939916 -215724437 + L1ME4a LINE L1 5962 6110 -11 1189 178 49 0 chr1 26940839 26941064 -215723289 + L1MB5 LINE L1 5743 5978 -206 730 146 108 0 chr1 26941071 26941201 -215723152 + L1MB5 LINE L1 6030 6173 -1 22 35 0 0 chr1 26941230 26941259 -215723094 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 26941704 26941732 -215722621 + AT_rich Low_complexity Low_complexity 1 28 0 930 159 43 119 chr1 26941996 26942273 -215722080 - LTR54B LTR ERV1 -241 257 2 881 259 61 11 chr1 26942335 26942598 -215721755 - L2 LINE L2 -2 3311 3036 1295 104 0 6 chr1 26945211 26945374 -215718979 + AluSq SINE Alu 1 162 -151 415 212 7 7 chr1 26945380 26945517 -215718836 + (CATG)n Simple_repeat Simple_repeat 4 140 0 1195 142 0 0 chr1 26945536 26945698 -215718655 + AluSg/x SINE Alu 137 298 -12 406 129 8 2 chr1 26946169 26946296 -215718057 + MSTC LTR MaLR 271 428 0 1748 182 27 32 chr1 26947726 26948095 -215716258 - MLT1A2 LTR MaLR 0 374 8 347 198 88 11 chr1 26948096 26948187 -215716166 - L1ME4a LINE L1 -21 6100 6003 1827 178 0 36 chr1 26948273 26948577 -215715776 + AluJb SINE Alu 1 293 -19 2291 110 0 0 chr1 26948579 26948878 -215715475 + AluSx SINE Alu 1 299 -13 2191 106 3 13 chr1 26949591 26949893 -215714460 - AluSx SINE Alu -13 299 1 200 280 120 0 chr1 26950034 26950109 -215714244 - MIR SINE MIR -2 260 177 1848 162 17 0 chr1 26950179 26950481 -215713872 + AluJb SINE Alu 1 307 -5 1859 147 43 7 chr1 26951074 26951374 -215712979 + AluSx SINE Alu 1 311 -1 210 308 0 66 chr1 26951377 26951468 -215712885 + L2 LINE L2 2559 2643 -671 1372 122 5 31 chr1 26951691 26951913 -215712440 + AluSq SINE Alu 94 309 -4 1982 232 53 33 chr1 26951920 26952487 -215711866 + MER77 LTR ERV1 55 683 -4 1943 151 52 18 chr1 26952644 26953029 -215711324 - L1MB8 LINE L1 -2 6176 5779 2150 138 0 10 chr1 26953029 26953340 -215711013 - AluSx SINE Alu -4 308 1 350 259 301 7 chr1 26953385 26953528 -215710825 - MIR3 SINE MIR -1 207 23 1162 161 22 0 chr1 26953641 26953821 -215710532 - AluJo SINE Alu -12 300 117 621 237 15 0 chr1 26954157 26954292 -215710061 + MER5B DNA MER1_type 42 178 0 1920 203 81 40 chr1 26954306 26954620 -215709733 - MLT1F LTR MaLR -54 488 147 2229 117 0 25 chr1 26954620 26954937 -215709416 + AluSg SINE Alu 2 310 0 1920 203 81 40 chr1 26954937 26955091 -215709262 - MLT1F LTR MaLR -395 147 1 496 301 15 0 chr1 26955305 26955441 -215708912 + MER5B DNA MER1_type 1 138 -40 2255 68 39 0 chr1 26955586 26955865 -215708488 + AluSg SINE Alu 2 291 -19 215 192 19 19 chr1 26956938 26956990 -215707363 - MIR SINE MIR -92 170 119 2329 104 0 3 chr1 26957367 26957666 -215706687 - AluSx SINE Alu -14 298 1 825 270 25 34 chr1 26957731 26957968 -215706385 + MIR SINE MIR 19 253 -9 253 425 42 0 chr1 26957962 26958082 -215706271 - L2 LINE L2 -21 3251 3127 * 1632 80 14 24 chr1 26958565 26958777 -215705576 - AluSg/x SINE Alu -19 291 82 278 362 9 9 chr1 26959103 26959208 -215705145 - MIR SINE MIR -78 130 26 2112 128 47 33 chr1 26959377 26959736 -215704617 - THE1B LTR MaLR 0 364 1 182 179 71 54 chr1 26959783 26959839 -215704514 + MIR SINE MIR 62 118 -90 259 331 143 32 chr1 26960034 26960188 -215704165 - L2 LINE L2 0 3272 3102 1461 188 6 80 chr1 26960190 26960515 -215703838 - AluJo SINE Alu 0 302 2 715 190 8 0 chr1 26960528 26960649 -215703704 - FLAM_C SINE Alu -10 123 2 1975 110 89 0 chr1 26960923 26961205 -215703148 - AluSx SINE Alu -5 307 1 497 269 40 20 chr1 26961781 26961930 -215702423 - MIR3 SINE MIR -26 182 31 188 358 147 0 chr1 26961990 26962099 -215702254 - L2 LINE L2 -33 3239 3115 804 207 0 0 chr1 26962240 26962380 -215701973 - FAM SINE Alu -42 143 4 255 316 18 26 chr1 26963029 26963143 -215701210 - MIR3 SINE MIR -87 121 9 1881 150 3 11 chr1 26964132 26964453 -215699900 - AluJb SINE Alu 0 319 1 313 298 67 14 chr1 26964525 26964733 -215699620 - L1MC4a LINE L1 -1875 5933 5715 1384 122 5 10 chr1 26964758 26964954 -215699399 - AluJ SINE Alu -12 300 106 242 118 0 0 chr1 26965036 26965070 -215699283 + Alu SINE Alu 85 118 -184 548 274 119 40 chr1 26965162 26965195 -215699158 - L1ME4a LINE L1 -38 6083 6054 2518 81 3 0 chr1 26965195 26965503 -215698850 + AluSc SINE Alu 1 309 0 548 274 119 40 chr1 26965503 26965621 -215698732 - L1ME4a LINE L1 -67 6054 5947 695 169 8 8 chr1 26965621 26965739 -215698614 - AluJ SINE Alu -183 119 2 548 274 119 40 chr1 26965739 26965965 -215698388 - L1ME4a LINE L1 -174 5947 5675 233 217 0 50 chr1 26965976 26966036 -215698317 + MER51C LTR ERV1 92 148 -492 234 128 0 0 chr1 26966154 26966193 -215698160 + (T)n Simple_repeat Simple_repeat 1 39 0 673 269 85 36 chr1 26966296 26966686 -215697667 - L1MC4a LINE L1 -1851 5957 5549 248 244 0 58 chr1 26966693 26966779 -215697574 - L1ME4a LINE L1 -502 5619 5539 333 0 0 0 chr1 26966829 26966866 -215697487 + (CA)n Simple_repeat Simple_repeat 2 38 0 220 263 150 0 chr1 26967073 26967153 -215697200 + MIR SINE MIR 164 255 -7 208 313 152 54 chr1 26968170 26968282 -215696071 + MIR3 SINE MIR 41 163 -45 401 318 76 14 chr1 26968357 26968646 -215695707 + L1MC4a LINE L1 5620 5926 -1882 207 86 0 29 chr1 26968731 26968766 -215695587 + (CAGTT)n Simple_repeat Simple_repeat 4 37 0 2138 102 14 0 chr1 26968886 26969199 -215695154 + AluSg SINE Alu 1 310 0 314 244 43 17 chr1 26969249 26969364 -215694989 + L1ME4a LINE L1 5969 6086 -35 1160 157 127 55 chr1 26969498 26969740 -215694613 - MER66A LTR ERV1 -3 475 209 2237 113 0 0 chr1 26969740 26970033 -215694320 - AluSg SINE Alu -17 293 1 1160 157 127 55 chr1 26970033 26970121 -215694232 - MER66A LTR ERV1 -269 209 129 537 299 150 20 chr1 26970268 26970609 -215693744 + L2 LINE L2 2887 3271 -1 371 243 0 0 chr1 26970682 26970752 -215693601 - MIR SINE MIR -185 77 8 257 211 0 0 chr1 26970777 26970829 -215693524 - L2 LINE L2 -5 3308 3257 715 164 57 14 chr1 26970836 26970976 -215693377 + L1PA16 LINE L1 6007 6152 -14 2001 129 37 0 chr1 26970980 26971274 -215693079 - AluSx SINE Alu -7 305 1 2428 71 0 10 chr1 26971281 26971589 -215692764 - AluY SINE Alu -6 305 1 2087 147 3 0 chr1 26971917 26972216 -215692137 + AluSx SINE Alu 1 300 -12 1322 140 23 26 chr1 26972734 26972999 -215691354 + L1MD3 LINE L1 7711 7974 -21 30 27 0 0 chr1 26973005 26973042 -215691311 + AT_rich Low_complexity Low_complexity 1 37 0 2456 95 0 0 chr1 26973044 26973348 -215691005 + AluSg SINE Alu 1 304 -6 212 342 105 33 chr1 26973504 26973656 -215690697 - L2 LINE L2 -70 3202 3040 1684 198 48 17 chr1 26973700 26974054 -215690299 + MLT1A1 LTR MaLR 1 365 0 2214 118 0 3 chr1 26974243 26974539 -215689814 + AluSq SINE Alu 1 295 -18 283 223 108 22 chr1 26974550 26974689 -215689664 - L1ME4a LINE L1 -3 6118 5968 473 296 116 28 chr1 26974780 26974996 -215689357 - L3 LINE CR1 -11 1566 1332 2522 64 0 0 chr1 26975007 26975305 -215689048 - AluY SINE Alu -13 298 1 649 282 44 6 chr1 26975618 26975799 -215688554 - MIR SINE MIR -12 250 63 305 283 26 35 chr1 26975820 26975933 -215688420 + MIR3 SINE MIR 51 162 -46 261 260 180 30 chr1 26975934 26976034 -215688319 + MIR SINE MIR 1 115 -147 1300 211 59 12 chr1 26976034 26976616 -215687737 - MER115 DNA AcHobo 0 693 28 2402 84 3 34 chr1 26976637 26976960 -215687393 + AluSp SINE Alu 1 313 0 710 175 0 9 chr1 26977055 26977169 -215687184 - MER81 DNA DNA 0 114 2 483 262 87 0 chr1 26977171 26977297 -215687056 + MIR SINE MIR 124 260 -2 1901 157 7 7 chr1 26977337 26977637 -215686716 + AluJb SINE Alu 13 312 0 252 155 58 78 chr1 26977637 26977740 -215686613 - MER104 DNA Tc2 -76 104 4 231 260 137 0 chr1 26977749 26977822 -215686531 - L2 LINE L2 -38 3275 3193 712 301 38 0 chr1 26978141 26978380 -215685973 + L1MC4a LINE L1 5549 5796 -2012 2120 131 0 3 chr1 26978467 26978750 -215685603 + AluSx SINE Alu 1 282 -30 1272 153 119 75 chr1 26978794 26979062 -215685291 - AluJo SINE Alu -30 282 3 241 280 51 25 chr1 26979070 26979188 -215685165 + L1MC4a LINE L1 5862 5982 -1826 760 89 0 0 chr1 26979328 26979429 -215684924 + MER72 LTR ERV1 601 701 -21 266 103 0 0 chr1 26979429 26979468 -215684885 + HERVH LTR ERV1 105 143 -7570 * 557 161 29 73 chr1 26979436 26979573 -215684780 + HERVH LTR ERV1 2009 2139 -5574 984 184 83 109 chr1 26979580 26980003 -215684350 + LTR7 LTR ERV1 1 412 -38 216 0 0 0 chr1 26980003 26980027 -215684326 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 2362 99 0 3 chr1 26980142 26980446 -215683907 + AluSq SINE Alu 1 303 -10 263 267 47 12 chr1 26980474 26980560 -215683793 - MIR SINE MIR 0 262 174 2409 86 0 0 chr1 26980622 26980926 -215683427 - AluY SINE Alu -7 304 1 292 231 100 77 chr1 26980955 26981085 -215683268 - L2 LINE L2 -14 3258 3126 896 129 0 0 chr1 26981797 26981913 -215682440 + FLAM_C SINE Alu 1 116 -27 450 0 0 0 chr1 26981929 26981979 -215682374 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1566 174 13 58 chr1 26986233 26986543 -215677810 - AluJo SINE Alu -16 296 1 310 334 2 59 chr1 26987147 26987287 -215677066 - MIR SINE MIR -72 136 5 458 208 54 8 chr1 26987465 26987595 -215676758 - L1ME4a LINE L1 -14 6107 5972 239 198 151 67 chr1 26987613 26987741 -215676612 - MIR SINE MIR -55 207 69 2214 111 14 0 chr1 26988557 26988846 -215675507 - AluSx SINE Alu -19 293 1 198 0 0 0 chr1 26989434 26989456 -215674897 + (T)n Simple_repeat Simple_repeat 1 22 0 222 210 97 105 chr1 26990810 26990934 -215673419 + MIR SINE MIR 140 262 0 256 315 65 0 chr1 26991566 26991674 -215672679 + MIR3 SINE MIR 87 201 -7 194 141 165 106 chr1 26992768 26992853 -215671500 - MIR SINE MIR -145 117 28 2446 88 7 0 chr1 26993235 26993540 -215670813 - AluSg SINE Alu -2 308 2 340 200 62 12 chr1 26993553 26993633 -215670720 + L3 LINE CR1 1491 1574 -3 434 293 85 23 chr1 26994287 26994459 -215669894 - MIR SINE MIR -57 205 25 233 338 0 0 chr1 26994500 26994571 -215669782 + L2 LINE L2 3180 3250 -63 669 286 122 8 chr1 26994786 26995048 -215669305 + MER102b DNA MER1_type 8 299 -42 2335 66 0 14 chr1 26995188 26995474 -215668879 + AluY SINE Alu 21 302 -9 195 273 61 0 chr1 26995563 26995629 -215668724 - L2 LINE L2 -7 3265 3196 * 199 290 65 32 chr1 26995602 26995695 -215668658 + MER5A DNA MER1_type 28 123 -66 700 152 0 58 chr1 26995703 26995841 -215668512 + FLAM_C SINE Alu 2 131 -2 1879 165 0 7 chr1 26995885 26996176 -215668177 - AluJb SINE Alu -23 289 1 272 316 96 0 chr1 26996324 26996460 -215667893 + MER91A DNA MER1_type 15 163 -33 2312 110 0 0 chr1 26996733 26997033 -215667320 + AluSq SINE Alu 1 300 -13 561 307 83 0 chr1 26997247 26997439 -215666914 + MER5C DNA MER1_type 1 208 -116 525 187 9 0 chr1 26997445 26997552 -215666801 - L1MB4 LINE L1 -6 6174 6067 225 307 61 26 chr1 26998031 26998145 -215666208 - MIR SINE MIR -58 150 33 189 0 0 0 chr1 26998171 26998192 -215666161 + (A)n Simple_repeat Simple_repeat 1 21 0 2164 91 7 4 chr1 26998192 26998466 -215665887 - AluSx SINE Alu -37 275 1 33 0 0 0 chr1 26998466 26998499 -215665854 + AT_rich Low_complexity Low_complexity 1 33 0 219 234 0 0 chr1 26998943 26998990 -215665363 + MIR3 SINE MIR 131 177 -31 591 234 45 60 chr1 26999154 26999226 -215665127 - MIR SINE MIR -4 258 186 2358 101 7 0 chr1 26999226 26999523 -215664830 - AluSq SINE Alu -14 299 1 591 234 45 60 chr1 26999523 26999651 -215664702 - MIR SINE MIR -76 186 61 3310 90 9 0 chr1 26999821 27000275 -215664078 - LTR22A LTR ERVK 0 458 1 432 280 177 0 chr1 27000436 27000611 -215663742 - L2 LINE L2 -4 3309 3104 503 274 206 14 chr1 27000635 27001150 -215663203 - L2 LINE L2 -343 2971 2358 480 262 60 36 chr1 27001702 27001870 -215662483 + MLT1J LTR MaLR 223 394 -117 508 267 35 0 chr1 27002077 27002193 -215662160 - L2 LINE L2 -1 3312 3193 298 246 320 17 chr1 27002347 27002522 -215661831 - MIR SINE MIR -3 259 32 207 0 0 0 chr1 27002565 27002588 -215661765 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2443 92 0 0 chr1 27002589 27002893 -215661460 + AluSc SINE Alu 1 304 -5 290 236 94 138 chr1 27003428 27003688 -215660665 - L2 LINE L2 -49 3223 2978 2145 118 10 10 chr1 27003688 27003994 -215660359 + AluSc SINE Alu 1 306 -3 290 236 94 138 chr1 27003994 27004051 -215660302 - L2 LINE L2 -294 2978 2920 405 302 72 0 chr1 27004120 27004259 -215660094 - MIR3 SINE MIR -7 201 53 704 185 8 0 chr1 27004488 27004618 -215659735 + MER5B DNA MER1_type 48 178 0 264 185 248 57 chr1 27004934 27005077 -215659276 + MIR SINE MIR 19 183 -58 189 318 15 0 chr1 27005789 27005855 -215658498 + MIR SINE MIR 69 135 -73 2569 73 0 0 chr1 27005856 27006159 -215658194 - AluY SINE Alu -8 303 1 22 0 0 0 chr1 27006413 27006435 -215657918 + AT_rich Low_complexity Low_complexity 1 22 0 1336 183 17 4 chr1 27006466 27006733 -215657620 - AluJo SINE Alu 0 309 40 406 182 30 106 chr1 27006739 27006809 -215657544 - L1MB7 LINE L1 0 6184 6127 2304 81 0 27 chr1 27006809 27007106 -215657247 + AluY SINE Alu 2 290 -21 406 182 30 106 chr1 27007106 27007167 -215657186 - L1MB7 LINE L1 -57 6127 6063 2244 110 0 26 chr1 27007167 27007477 -215656876 - AluSq SINE Alu -11 302 1 858 169 81 12 chr1 27007480 27007640 -215656713 - FRAM SINE Alu -10 166 1 189 0 0 0 chr1 27007750 27007771 -215656582 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2307 76 4 0 chr1 27007777 27008052 -215656301 - AluSp SINE Alu -37 276 1 242 250 43 54 chr1 27008125 27008217 -215656136 - L2 LINE L2 -349 2964 2874 1778 130 115 4 chr1 27008408 27008677 -215655676 + AluSx SINE Alu 1 299 -13 230 230 220 10 chr1 27008725 27008825 -215655528 - LTR16C LTR ERVL -1 490 370 271 316 51 25 chr1 27009575 27009771 -215654582 + L2 LINE L2 2817 3017 -255 640 319 38 9 chr1 27010002 27010215 -215654138 - MIR SINE MIR 0 262 44 249 258 68 0 chr1 27010788 27010871 -215653482 + MIR SINE MIR 51 140 -68 348 212 0 0 chr1 27011068 27011134 -215653219 + MIR SINE MIR 81 146 -62 987 162 22 11 chr1 27011136 27011321 -215653032 - MER39 LTR ERV1 0 707 521 381 91 0 0 chr1 27011317 27011372 -215652981 + MER39B LTR ERV1 411 465 -188 * 809 104 0 0 chr1 27011389 27011495 -215652858 + AluSg/x SINE Alu 189 294 -15 265 30 0 0 chr1 27011576 27011609 -215652744 - AluSc SINE Alu -76 223 191 1477 118 180 78 chr1 27011626 27011778 -215652575 - MER39B LTR ERV1 -187 466 331 2331 111 10 0 chr1 27011778 27012085 -215652268 - AluSg SINE Alu 0 310 1 1477 118 180 78 chr1 27012085 27012128 -215652225 - MER39B LTR ERV1 -322 331 294 180 0 0 0 chr1 27012128 27012148 -215652205 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1477 118 180 78 chr1 27012148 27012187 -215652166 - MER39B LTR ERV1 -359 294 260 2427 91 0 0 chr1 27012187 27012485 -215651868 - AluSc SINE Alu -11 298 1 1477 118 180 78 chr1 27012485 27012631 -215651722 - MER39B LTR ERV1 -393 260 45 2280 90 0 0 chr1 27012631 27012910 -215651443 - AluSx SINE Alu -12 300 22 192 217 0 0 chr1 27012921 27012967 -215651386 + CT-rich Low_complexity Low_complexity 1 46 0 637 81 30 10 chr1 27012977 27013076 -215651277 - HY1 scRNA scRNA -9 103 3 307 79 0 143 chr1 27013077 27013140 -215651213 - MER39B LTR ERV1 -599 54 1 506 228 24 13 chr1 27013192 27013341 -215651012 + MIR SINE MIR 98 248 -14 223 120 20 20 chr1 27013646 27013696 -215650657 + CT-rich Low_complexity Low_complexity 1 50 0 725 263 0 0 chr1 27013701 27013876 -215650477 - FRAM SINE Alu -1 175 1 308 320 16 10 chr1 27013946 27014100 -215650253 - MIR SINE MIR -55 207 52 824 195 7 7 chr1 27016237 27016391 -215647962 + FRAM SINE Alu 8 161 -15 2480 94 3 0 chr1 27016393 27016700 -215647653 + AluSp SINE Alu 3 310 -3 1701 179 28 0 chr1 27016703 27016988 -215647365 + AluJb SINE Alu 1 293 -19 1912 139 27 10 chr1 27017763 27018064 -215646289 + AluJb SINE Alu 1 306 -6 210 243 146 19 chr1 27018094 27018197 -215646156 + L2 LINE L2 3150 3265 -7 406 238 32 24 chr1 27018208 27018334 -215646019 - MIR3 SINE MIR -31 177 51 322 317 54 30 chr1 27018349 27018516 -215645837 - MIR SINE MIR -35 227 57 203 250 33 125 chr1 27018696 27018816 -215645537 + L2 LINE L2 3198 3306 -7 188 108 0 27 chr1 27019006 27019043 -215645310 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 610 265 123 18 chr1 27019591 27019810 -215644543 - MIR SINE MIR 0 262 21 219 264 35 58 chr1 27019916 27020003 -215644350 + MIR SINE MIR 49 133 -75 2323 113 7 0 chr1 27020974 27021284 -215643069 - AluSx SINE Alu 0 312 1 296 281 141 0 chr1 27021292 27021413 -215642940 + MIR SINE MIR 104 241 -21 2464 71 0 3 chr1 27021431 27021727 -215642626 - AluSc SINE Alu -14 295 1 480 194 8 97 chr1 27021766 27021843 -215642510 + MER103 DNA DNA 4 66 -100 2176 135 0 3 chr1 27021843 27022147 -215642206 - AluJb SINE Alu -9 303 1 480 194 8 97 chr1 27022147 27022203 -215642150 + MER103 DNA DNA 66 125 -41 252 337 21 0 chr1 27022328 27022423 -215641930 + MIR3 SINE MIR 88 184 -24 1718 163 10 40 chr1 27023243 27023543 -215640810 + AluJo SINE Alu 5 295 -17 2269 86 7 0 chr1 27023543 27023860 -215640493 + AluSx SINE Alu 1 319 0 573 217 17 0 chr1 27023885 27024000 -215640353 + MIR SINE MIR 66 182 -80 367 310 70 0 chr1 27024033 27024175 -215640178 + L2 LINE L2 3162 3313 0 2416 89 0 10 chr1 27024559 27024737 -215639616 - AluSp SINE Alu -2 311 136 2509 74 7 0 chr1 27024737 27025046 -215639307 - AluY SINE Alu 0 311 1 2416 89 0 10 chr1 27025046 27025180 -215639173 - AluSp SINE Alu -177 136 2 367 321 133 41 chr1 27025186 27025397 -215638956 - L2 LINE L2 -1 3271 3081 2330 70 36 7 chr1 27025397 27025698 -215638655 - AluY SINE Alu -1 310 1 1587 180 30 30 chr1 27025702 27025997 -215638356 - AluJo SINE Alu -17 295 1 367 321 133 41 chr1 27025997 27026254 -215638099 - L2 LINE L2 -193 3079 2751 424 200 158 0 chr1 27026451 27026546 -215637807 - L2 LINE L2 -1 3312 3203 2484 71 13 3 chr1 27028530 27028840 -215635513 - AluSp SINE Alu 0 313 1 250 225 67 11 chr1 27028932 27029021 -215635332 - L2 LINE L2 -263 3009 2916 369 0 0 0 chr1 27029633 27029674 -215634679 + (CA)n Simple_repeat Simple_repeat 2 42 0 1915 152 0 11 chr1 27029709 27029992 -215634361 + AluSx SINE Alu 1 280 -32 2341 60 18 0 chr1 27030117 27030401 -215633952 + AluSg SINE Alu 1 289 -21 21 36 0 0 chr1 27031063 27031091 -215633262 + GC_rich Low_complexity Low_complexity 1 28 0 194 276 181 19 chr1 27031891 27031996 -215632357 - MIR SINE MIR -130 132 11 301 263 150 23 chr1 27032015 27032148 -215632205 - MIR SINE MIR -1 261 112 392 287 28 28 chr1 27032227 27032370 -215631983 - MIR SINE MIR 0 262 120 2370 74 0 0 chr1 27032375 27032686 -215631667 - AluY SINE Alu 0 312 2 2356 96 3 0 chr1 27032689 27032991 -215631362 - AluSq SINE Alu -10 303 1 2396 72 16 10 chr1 27033023 27033328 -215631025 + AluSx SINE Alu 1 307 -5 1730 152 3 34 chr1 27033448 27033744 -215630609 - AluJb SINE Alu -25 287 1 201 39 0 0 chr1 27033864 27033890 -215630463 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1962 117 36 4 chr1 27033894 27034168 -215630185 - AluSp SINE Alu -30 283 1 2417 106 3 0 chr1 27034176 27034487 -215629866 - AluSx SINE Alu 0 312 1 25 65 0 0 chr1 27035066 27035112 -215629241 + AT_rich Low_complexity Low_complexity 1 46 0 568 165 87 26 chr1 27035119 27035234 -215629119 + FLAM_C SINE Alu 12 133 -10 1433 215 197 34 chr1 27035254 27035399 -215628954 + MLT1F1 LTR MaLR 1 121 -446 1682 116 0 0 chr1 27035399 27035623 -215628730 + AluSg/x SINE Alu 85 308 -2 1433 215 197 34 chr1 27035623 27035914 -215628439 + MLT1F1 LTR MaLR 121 508 -59 574 291 109 47 chr1 27035914 27036234 -215628119 + MLT1F1-int LTR MaLR 1032 1371 0 1203 147 93 58 chr1 27036234 27036327 -215628026 + MLT1F1 LTR MaLR 1 89 -478 2040 123 22 0 chr1 27036327 27036636 -215627717 - AluSx SINE Alu 0 315 1 1203 147 93 58 chr1 27036636 27036946 -215627407 + MLT1F1 LTR MaLR 89 503 -64 2107 136 10 0 chr1 27036946 27037254 -215627099 - AluSx SINE Alu -1 311 1 1203 147 93 58 chr1 27037254 27037322 -215627031 + MLT1F1 LTR MaLR 503 567 0 5909 184 80 118 chr1 27037350 27037830 -215626523 + L1MB7 LINE L1 2533 3030 -3116 2187 89 65 3 chr1 27037830 27038121 -215626232 + AluSq SINE Alu 1 309 -4 5909 184 80 118 chr1 27038121 27038320 -215626033 + L1MB7 LINE L1 3030 3235 -2911 1859 153 4 7 chr1 27038320 27038601 -215625752 + AluJb SINE Alu 5 284 -28 5909 184 80 118 chr1 27038601 27038639 -215625714 + L1MB7 LINE L1 3235 3273 -2873 1402 124 20 0 chr1 27038639 27038840 -215625513 + AluSg/x SINE Alu 103 307 -3 5909 184 80 118 chr1 27038840 27040329 -215624024 + L1MB7 LINE L1 3273 4850 -1296 221 0 35 0 chr1 27040329 27040358 -215623995 + (TTG)n Simple_repeat Simple_repeat 2 31 0 316 123 0 18 chr1 27040429 27040486 -215623867 - L1MB8 LINE L1 -7 6171 6116 2463 146 39 46 chr1 27040486 27040633 -215623720 + L1MB7 LINE L1 5639 5786 -398 2133 145 0 10 chr1 27040633 27040944 -215623409 + AluSx SINE Alu 1 308 -4 2463 146 39 46 chr1 27040944 27041326 -215623027 + L1MB7 LINE L1 5786 6175 -9 2061 239 51 32 chr1 27041486 27042053 -215622300 - MER77 LTR ERV1 -4 601 55 1349 132 5 18 chr1 27042060 27042279 -215622074 - AluSq SINE Alu -4 309 94 192 342 0 13 chr1 27042512 27042593 -215621760 - L2 LINE L2 -676 2638 2559 1866 147 43 7 chr1 27042596 27042896 -215621457 - AluSx SINE Alu -1 311 1 2058 127 3 13 chr1 27043005 27043313 -215621040 + AluSx SINE Alu 1 305 -7 1879 128 25 0 chr1 27043846 27044128 -215620225 - AluSq SINE Alu -24 289 1 * 2239 98 10 0 chr1 27044128 27044432 -215619921 - AluSx SINE Alu -5 307 1 302 365 50 33 chr1 27045265 27045446 -215618907 - L2 LINE L2 -558 2756 2573 2068 93 33 3 chr1 27046171 27046471 -215617882 + AluSq SINE Alu 1 309 -4 11709 119 34 40 chr1 27046472 27046959 -215617394 - Tigger1 DNA MER2_type -362 2056 1568 692 209 8 22 chr1 27046959 27047093 -215617260 - FLAM_A SINE Alu 0 133 2 11709 119 34 40 chr1 27047093 27047383 -215616970 - Tigger1 DNA MER2_type -850 1568 1278 1783 149 28 0 chr1 27047383 27047671 -215616682 - AluJo SINE Alu -16 296 1 11709 119 34 40 chr1 27047671 27048746 -215615607 - Tigger1 DNA MER2_type -1140 1278 213 2351 51 7 3 chr1 27048746 27049040 -215615313 + AluY SINE Alu 1 295 -16 11709 119 34 40 chr1 27049040 27049251 -215615102 - Tigger1 DNA MER2_type -2205 213 2 268 305 188 0 chr1 27049570 27049724 -215614629 + L2 LINE L2 3120 3302 -11 1177 239 14 32 chr1 27049782 27050066 -215614287 - MLT1G1 LTR MaLR -302 293 15 1521 280 111 34 chr1 27050080 27050604 -215613749 - L1MEc LINE L1 -5055 1341 859 2222 94 3 10 chr1 27050604 27050903 -215613450 + AluSq SINE Alu 1 297 -16 1521 280 111 34 chr1 27050903 27051278 -215613075 - L1MEc LINE L1 -5537 859 373 572 265 11 17 chr1 27051352 27051533 -215612820 - L1MEc LINE L1 -6150 246 67 489 245 90 60 chr1 27051964 27052042 -215612311 - MIR SINE MIR 0 262 188 2389 82 0 0 chr1 27052042 27052347 -215612006 - AluSg SINE Alu -5 305 1 489 245 90 60 chr1 27052347 27052468 -215611885 - MIR SINE MIR -74 188 57 1078 53 0 0 chr1 27052480 27052611 -215611742 - AluSg SINE Alu -179 131 1 2251 90 0 10 chr1 27055935 27056236 -215608117 - AluSc SINE Alu -11 298 1 1406 145 114 35 chr1 27056780 27057069 -215607284 - AluJo SINE Alu 0 312 1 1690 158 14 10 chr1 27057160 27057452 -215606901 + AluJo SINE Alu 7 299 -13 858 271 43 27 chr1 27058659 27058917 -215605436 - MIR SINE MIR 0 262 1 1670 136 82 0 chr1 27061990 27062269 -215602084 - AluSx SINE Alu -10 302 1 1838 137 7 7 chr1 27062545 27062829 -215601524 + AluSx SINE Alu 1 284 -28 1921 147 0 23 chr1 27062832 27063132 -215601221 + AluSx SINE Alu 4 296 -16 1983 125 14 3 chr1 27063134 27063431 -215600922 + AluSx SINE Alu 1 300 -12 215 127 36 36 chr1 27064335 27064390 -215599963 - L2 LINE L2 -188 3084 3030 1603 185 24 3 chr1 27064436 27064723 -215599630 + AluSx SINE Alu 1 293 -19 23 54 0 0 chr1 27064970 27065007 -215599346 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr1 27065275 27065314 -215599039 + AT_rich Low_complexity Low_complexity 1 39 0 229 266 62 0 chr1 27065392 27065456 -215598897 - MIR SINE MIR -59 149 82 361 192 26 0 chr1 27065560 27065638 -215598715 + MIR SINE MIR 183 262 0 828 164 0 8 chr1 27066395 27066529 -215597824 + FLAM_A SINE Alu 1 133 0 2470 66 0 0 chr1 27067744 27068049 -215596304 + AluY SINE Alu 1 305 -6 405 342 25 12 chr1 27068326 27068487 -215595866 + MIR SINE MIR 58 220 -42 405 311 68 16 chr1 27068577 27068767 -215595586 - L2 LINE L2 0 3272 3073 230 312 29 51 chr1 27069046 27069184 -215595169 - MIR3 SINE MIR -62 146 12 219 282 91 18 chr1 27069317 27069427 -215594926 + L2 LINE L2 2666 2783 -531 387 0 0 0 chr1 27071139 27071182 -215593171 + (CA)n Simple_repeat Simple_repeat 1 43 0 776 250 60 0 chr1 27071436 27071604 -215592749 + MER45A DNA AcHobo 1 178 0 424 274 71 30 chr1 27071884 27072049 -215592304 + LTR16A1 LTR ERVL 236 412 -45 197 32 0 32 chr1 27072049 27072080 -215592273 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 424 274 71 30 chr1 27072080 27072111 -215592242 + LTR16A1 LTR ERVL 412 440 -17 621 220 126 0 chr1 27072859 27073018 -215591335 + MIR SINE MIR 27 205 -57 2125 103 0 0 chr1 27073055 27073356 -215590997 + AluSx SINE Alu 1 301 0 235 191 64 0 chr1 27075458 27075505 -215588848 + L2 LINE L2 3223 3272 0 265 269 113 36 chr1 27075790 27075978 -215588375 + MIR SINE MIR 14 211 -51 200 333 21 21 chr1 27076198 27076291 -215588062 - MIR SINE MIR -109 153 61 504 270 105 47 chr1 27076955 27077251 -215587102 + L2 LINE L2 2914 3226 -46 402 255 111 30 chr1 27077415 27077620 -215586733 - MIR SINE MIR -51 211 12 477 191 0 0 chr1 27077953 27078063 -215586290 + (TG)n Simple_repeat Simple_repeat 2 111 0 306 291 0 35 chr1 27078065 27078151 -215586202 + L1MCa LINE L1 1995 2077 -4349 1620 165 9 22 chr1 27078193 27078509 -215585844 - AluJo SINE Alu 0 312 1 192 187 0 1 chr1 27079192 27079227 -215585126 - MIR SINE MIR -56 152 105 358 287 14 28 chr1 27079954 27080097 -215584256 - MIR3 SINE MIR -61 147 7 203 246 33 0 chr1 27081027 27081088 -215583265 + L2 LINE L2 2990 3052 -220 273 349 47 12 chr1 27081167 27081336 -215583017 - MIR SINE MIR -28 234 60 320 250 0 0 chr1 27082198 27082294 -215582059 + (CAGCC)n Simple_repeat Simple_repeat 1 96 0 210 232 295 0 chr1 27083223 27083335 -215581018 - L2 LINE L2 0 3313 3169 2235 68 0 56 chr1 27083431 27083754 -215580599 + AluY SINE Alu 1 305 -6 221 301 96 0 chr1 27083917 27084053 -215580300 + L2 LINE L2 2324 2472 -842 264 284 51 47 chr1 27084447 27084662 -215579691 - L2 LINE L2 -239 3033 2818 265 271 62 42 chr1 27084972 27085116 -215579237 + L2 LINE L2 2937 3083 -189 490 261 55 18 chr1 27085573 27085743 -215578610 - MIR SINE MIR -55 153 27 28 0 0 0 chr1 27085907 27085935 -215578418 + GC_rich Low_complexity Low_complexity 1 28 0 402 302 21 32 chr1 27086227 27086416 -215577937 + MER5A DNA MER1_type 2 188 -1 2054 92 41 17 chr1 27086577 27086870 -215577483 + AluSx SINE Alu 11 310 -2 370 244 12 0 chr1 27086897 27086983 -215577370 + MIR SINE MIR 70 156 -106 1942 146 3 0 chr1 27087914 27088216 -215576137 + AluSx SINE Alu 1 303 -9 1972 149 3 0 chr1 27088280 27088576 -215575777 + AluJb SINE Alu 1 297 -15 577 319 71 9 chr1 27088660 27088870 -215575483 + MIR SINE MIR 28 250 -12 1859 133 23 7 chr1 27088879 27089179 -215575174 - AluJb SINE Alu -1 311 7 222 259 74 32 chr1 27089193 27089332 -215575021 - MIR3 SINE MIR -76 132 15 219 213 0 53 chr1 27089989 27090064 -215574289 + C-rich Low_complexity Low_complexity 2 72 0 241 216 30 42 chr1 27090201 27090368 -215573985 + (CGG)n Simple_repeat Simple_repeat 2 166 0 278 58 14 58 chr1 27090383 27090452 -215573901 + (CGGGG)n Simple_repeat Simple_repeat 1 66 0 260 376 60 0 chr1 27091458 27091575 -215572778 - MIR SINE MIR -16 246 123 254 250 31 0 chr1 27091737 27091801 -215572552 + L2 LINE L2 3205 3270 -2 366 327 110 49 chr1 27092628 27093115 -215571238 - L2 LINE L2 0 3272 2741 474 157 0 0 chr1 27093390 27093473 -215570880 + (CA)n Simple_repeat Simple_repeat 2 84 0 546 320 106 48 chr1 27093839 27094299 -215570054 - L2 LINE L2 -23 3290 2774 890 206 0 0 chr1 27094299 27094454 -215569899 - FRAM SINE Alu -10 156 2 546 320 106 48 chr1 27094454 27094525 -215569828 - L2 LINE L2 -539 2774 2709 2224 111 0 0 chr1 27094527 27094834 -215569519 - AluSq SINE Alu -6 307 1 1330 186 43 36 chr1 27094841 27095279 -215569074 + L1MB7 LINE L1 5696 6170 -14 799 270 165 42 chr1 27095287 27095617 -215568736 - L2 LINE L2 -598 2716 2301 2290 88 0 3 chr1 27095617 27095914 -215568439 + AluSc SINE Alu 1 296 -13 799 270 165 42 chr1 27095914 27096087 -215568266 - L2 LINE L2 -1013 2301 2151 325 252 211 0 chr1 27096339 27096462 -215567891 - MER5B DNA MER1_type -3 175 27 275 288 45 54 chr1 27096645 27096756 -215567597 + MER81 DNA DNA 3 112 -2 1841 116 6 98 chr1 27096973 27097300 -215567053 - AluSx SINE Alu -15 297 1 933 194 0 0 chr1 27097302 27097457 -215566896 - FRAM SINE Alu -11 155 1 487 226 25 98 chr1 27097514 27097701 -215566652 + L1ME3 LINE L1 5945 6113 -49 2154 110 27 0 chr1 27097701 27098000 -215566353 + AluSx SINE Alu 1 307 -5 487 226 25 98 chr1 27098000 27098047 -215566306 + L1ME3 LINE L1 6113 6162 0 641 172 0 31 chr1 27098172 27098300 -215566053 - FRAM SINE Alu 0 176 53 241 367 28 0 chr1 27099269 27099378 -215564975 + L2 LINE L2 2672 2783 -531 821 210 110 27 chr1 27099378 27099552 -215564801 - MSTD LTR MaLR 0 396 238 249 33 0 0 chr1 27099552 27099582 -215564771 + (CAAG)n Simple_repeat Simple_repeat 3 32 0 821 210 110 27 chr1 27099582 27099742 -215564611 - MSTD LTR MaLR -158 238 1 354 228 276 0 chr1 27099820 27099965 -215564388 + L2 LINE L2 2881 3065 -248 202 151 170 19 chr1 27100439 27100492 -215563861 + MIR SINE MIR 87 147 -61 339 301 15 53 chr1 27101005 27101138 -215563215 - MIR SINE MIR -116 146 19 272 214 71 0 chr1 27101433 27101503 -215562850 - MER3 DNA MER1_type 0 209 135 2301 88 0 0 chr1 27101503 27101800 -215562553 + AluSg SINE Alu 1 297 -13 1284 97 6 0 chr1 27101800 27101975 -215562378 + AluSc SINE Alu 132 307 -2 305 187 93 0 chr1 27101975 27102050 -215562303 - MER3 DNA MER1_type -73 136 55 545 231 112 12 chr1 27102289 27102363 -215561990 + MER5A DNA MER1_type 4 69 -120 1474 182 71 0 chr1 27102363 27102643 -215561710 + AluJo SINE Alu 1 300 -12 545 231 112 12 chr1 27102643 27102737 -215561616 + MER5A DNA MER1_type 69 189 0 227 277 27 98 chr1 27103849 27104033 -215560320 + MLT1K LTR MaLR 1 171 -417 401 270 8 16 chr1 27104160 27104286 -215560067 + LTR67 LTR ERVL 433 557 0 466 324 127 12 chr1 27104286 27104616 -215559737 + L1ME4a LINE L1 5738 6105 -16 180 0 0 0 chr1 27104626 27104646 -215559707 + (T)n Simple_repeat Simple_repeat 1 20 0 291 296 190 21 chr1 27104820 27104962 -215559391 - MIR SINE MIR -79 183 18 1958 112 35 11 chr1 27105058 27105345 -215559008 + AluSx SINE Alu 1 294 -18 545 345 125 13 chr1 27105482 27105795 -215558558 + L2 LINE L2 2965 3312 -1 330 298 35 28 chr1 27105781 27105922 -215558431 + MIR3 SINE MIR 4 145 -63 * 180 270 54 40 chr1 27107085 27107159 -215557194 + MIR3 SINE MIR 9 83 -125 1218 167 0 23 chr1 27108473 27108689 -215555664 - AluJb SINE Alu -18 294 84 305 269 54 0 chr1 27109991 27110084 -215554269 + MER103 DNA DNA 2 99 -67 552 293 41 37 chr1 27110316 27110558 -215553795 - MIR SINE MIR 0 262 20 485 330 23 17 chr1 27111529 27111705 -215552648 + MIR3 SINE MIR 30 206 -2 268 135 135 0 chr1 27111940 27111992 -215552361 + MIR SINE MIR 88 146 -62 308 323 116 6 chr1 27113335 27113499 -215550854 + L2 LINE L2 2639 2820 -494 806 295 30 4 chr1 27113518 27113755 -215550598 + MIR SINE MIR 19 261 -1 291 263 10 176 chr1 27113878 27114008 -215550345 - L2 LINE L2 -39 3274 3124 2136 109 0 7 chr1 27114008 27114301 -215550052 - AluSx SINE Alu -21 291 1 291 263 10 176 chr1 27114301 27114383 -215549970 - L2 LINE L2 -189 3124 3124 1931 172 0 10 chr1 27114383 27114697 -215549656 + AluSx SINE Alu 1 311 -1 291 263 10 176 chr1 27114697 27114784 -215549569 - L2 LINE L2 -189 3124 3024 202 313 164 52 chr1 27114800 27115110 -215549243 + L2 LINE L2 2916 3260 -12 284 170 0 0 chr1 27115767 27115820 -215548533 - MER66B LTR ERV1 -139 347 295 643 234 82 6 chr1 27115825 27115996 -215548357 + MIR SINE MIR 46 229 -33 401 175 135 56 chr1 27116110 27116236 -215548117 + MIR SINE MIR 26 161 -101 430 231 175 7 chr1 27116379 27116522 -215547831 - MER5B DNA MER1_type -2 176 10 575 239 129 7 chr1 27116535 27116690 -215547663 - MER5B DNA MER1_type -2 176 3 371 188 21 0 chr1 27117255 27117351 -215547002 + (TCCA)n Simple_repeat Simple_repeat 2 99 0 882 305 191 3 chr1 27117374 27117989 -215546364 - L2 LINE L2 0 3313 2562 199 270 0 32 chr1 27117988 27118051 -215546302 - MIR3 SINE MIR -54 154 94 * 444 261 14 49 chr1 27118216 27118358 -215545995 + MIR3 SINE MIR 57 193 -15 243 314 59 8 chr1 27118468 27118586 -215545767 + MIR SINE MIR 18 141 -67 366 355 130 0 chr1 27119887 27120056 -215544297 - MIR SINE MIR -9 253 63 266 360 84 22 chr1 27120733 27120911 -215543442 + L2 LINE L2 3083 3271 -1 454 177 33 29 chr1 27121160 27122107 -215542246 + (TG)n Simple_repeat Simple_repeat 1 950 0 439 190 35 29 chr1 27122187 27122361 -215541992 + (TG)n Simple_repeat Simple_repeat 1 175 0 281 178 23 8 chr1 27122469 27122598 -215541755 + (TG)n Simple_repeat Simple_repeat 1 131 0 385 215 34 23 chr1 27122611 27122788 -215541565 + (TG)n Simple_repeat Simple_repeat 2 180 0 375 195 34 18 chr1 27122815 27123145 -215541208 + (TG)n Simple_repeat Simple_repeat 1 335 0 186 141 31 16 chr1 27123171 27123235 -215541118 + (TG)n Simple_repeat Simple_repeat 1 65 0 183 191 21 11 chr1 27123333 27123427 -215540926 + (TG)n Simple_repeat Simple_repeat 1 95 0 271 326 11 21 chr1 27124959 27125054 -215539299 - MIR3 SINE MIR -41 167 74 1980 93 0 7 chr1 27125506 27125775 -215538578 - AluSg SINE Alu -14 296 30 243 0 0 0 chr1 27125809 27125836 -215538517 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2182 107 0 16 chr1 27125852 27126162 -215538191 + AluSx SINE Alu 1 305 -7 1749 98 8 0 chr1 27127061 27127296 -215537057 - AluSg/x SINE Alu -8 302 66 2066 128 7 0 chr1 27127296 27127584 -215536769 - AluSx SINE Alu -21 291 1 2287 124 26 109 chr1 27127678 27127842 -215536511 + L1MA8 LINE L1 5621 5797 -494 1724 151 48 3 chr1 27127842 27128133 -215536220 + AluSx SINE Alu 1 304 -8 2287 124 26 109 chr1 27128133 27128147 -215536206 + L1MA8 LINE L1 5797 5811 -480 1866 172 13 0 chr1 27128147 27128455 -215535898 + AluJo SINE Alu 1 312 0 2287 124 26 109 chr1 27128455 27128647 -215535706 + L1MA8 LINE L1 5811 5924 -367 2423 66 3 0 chr1 27128647 27128952 -215535401 + AluSx SINE Alu 1 306 -6 2287 124 26 109 chr1 27128952 27129191 -215535162 + L1MA8 LINE L1 5924 6181 -110 30 0 0 0 chr1 27129326 27129356 -215534997 + AT_rich Low_complexity Low_complexity 1 30 0 388 309 125 0 chr1 27129402 27129538 -215534815 - MIR SINE MIR -57 205 53 798 251 90 9 chr1 27130213 27130424 -215533929 + MIR SINE MIR 35 262 0 466 297 130 54 chr1 27130568 27130807 -215533546 + L3 LINE CR1 1263 1519 -58 207 233 17 50 chr1 27130871 27130931 -215533422 - MER5A DNA MER1_type -99 90 33 206 342 26 0 chr1 27132061 27132137 -215532216 - MIR SINE MIR -20 242 165 368 299 107 17 chr1 27132594 27132771 -215531582 - MIR SINE MIR -3 205 9 250 313 135 0 chr1 27132849 27132945 -215531408 + MIR SINE MIR 32 140 -122 233 288 0 0 chr1 27133039 27133098 -215531255 + MIR SINE MIR 86 144 -64 413 304 69 12 chr1 27133673 27133884 -215530469 - MIR SINE MIR -3 259 34 417 284 108 14 chr1 27134246 27134394 -215529959 + MIR SINE MIR 44 205 -57 245 285 114 16 chr1 27134443 27134566 -215529787 - MIR SINE MIR -26 236 102 662 261 128 4 chr1 27134820 27135046 -215529307 + MIR SINE MIR 8 261 -1 300 302 17 26 chr1 27136767 27136883 -215527470 + MIR3 SINE MIR 69 183 -25 440 287 90 27 chr1 27137219 27137407 -215526946 + MIR SINE MIR 60 259 -3 224 379 45 23 chr1 27137706 27137838 -215526515 - MIR3 SINE MIR -38 170 36 528 278 101 29 chr1 27137860 27138100 -215526253 + L1ME4a LINE L1 5573 5826 -295 1150 104 0 0 chr1 27138103 27138257 -215526096 + AluSq SINE Alu 1 154 -159 257 298 48 77 chr1 27138270 27138374 -215525979 + MIR SINE MIR 106 206 -56 368 296 145 0 chr1 27138728 27138926 -215525427 + MIR SINE MIR 16 242 -20 653 217 23 0 chr1 27139171 27139477 -215524876 + GA-rich Low_complexity Low_complexity 1 313 0 419 186 0 8 chr1 27139494 27139612 -215524741 + GA-rich Low_complexity Low_complexity 1 117 0 259 364 42 0 chr1 27141103 27141221 -215523132 + MIR3 SINE MIR 83 205 -3 244 321 46 9 chr1 27141937 27142046 -215522307 + MIR SINE MIR 33 145 -117 201 294 59 0 chr1 27142302 27142353 -215522000 - MIR SINE MIR -110 152 99 419 225 90 107 chr1 27142687 27142865 -215521488 - MIR SINE MIR -57 205 31 185 303 81 10 chr1 27143611 27143710 -215520643 + MIR SINE MIR 18 123 -139 2157 112 3 0 chr1 27144248 27144533 -215519820 - AluSx SINE Alu -13 299 14 2069 150 0 3 chr1 27144568 27144862 -215519491 - AluSx SINE Alu -19 293 1 207 0 0 0 chr1 27145019 27145042 -215519311 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 249 283 87 22 chr1 27146477 27146569 -215517784 - MIR3 SINE MIR -27 181 84 186 219 0 24 chr1 27147408 27147449 -215516904 + MIR SINE MIR 107 146 -62 617 270 46 6 chr1 27147764 27147938 -215516415 + MIR SINE MIR 15 195 -67 194 317 126 77 chr1 27148350 27148596 -215515757 + L2 LINE L2 2920 3177 -95 602 228 67 22 chr1 27149101 27149281 -215515072 + L2 LINE L2 2013 2200 -1114 286 100 0 0 chr1 27149290 27149330 -215515023 + Alu SINE Alu 1 40 -259 849 252 54 8 chr1 27149356 27149598 -215514755 - MIR SINE MIR 0 262 10 710 251 18 66 chr1 27149677 27149875 -215514478 - MIR SINE MIR -50 212 26 1212 194 14 0 chr1 27149875 27150091 -215514262 - MER20 DNA MER1_type 0 219 1 710 251 18 66 chr1 27150091 27150110 -215514243 - MIR SINE MIR -236 26 8 621 297 159 43 chr1 27150609 27151372 -215512981 + L2 LINE L2 2400 3272 0 607 238 155 48 chr1 27151506 27151646 -215512707 + MIR SINE MIR 28 198 -64 2230 132 0 0 chr1 27151646 27151949 -215512404 - AluSx SINE Alu -9 303 1 607 238 155 48 chr1 27151949 27152014 -215512339 + MIR SINE MIR 198 255 -7 468 286 102 29 chr1 27152022 27152228 -215512125 + MIR SINE MIR 6 226 -36 446 219 124 15 chr1 27152251 27152388 -215511965 + L2 LINE L2 3162 3313 0 238 279 101 0 chr1 27152411 27152490 -215511863 + L2 LINE L2 3227 3313 0 3474 143 8 4 chr1 27152564 27153082 -215511271 + MLT2B1 LTR ERVL 1 520 0 381 274 5 22 chr1 27153091 27153213 -215511140 + MIR SINE MIR 98 216 -46 203 218 0 0 chr1 27153230 27153275 -215511078 + MIR SINE MIR 104 147 -63 260 148 25 37 chr1 27155611 27155692 -215508661 + (CGGG)n Simple_repeat Simple_repeat 3 82 0 207 114 0 0 chr1 27155712 27155747 -215508606 + (CGG)n Simple_repeat Simple_repeat 3 37 0 1129 149 101 71 chr1 27155781 27156347 -215508006 + MER52A LTR ERV1 5 665 -1090 38 108 0 0 chr1 27156356 27156513 -215507840 + GC_rich Low_complexity Low_complexity 1 157 0 29 0 0 0 chr1 27156954 27156983 -215507370 + GC_rich Low_complexity Low_complexity 1 29 0 266 252 224 9 chr1 27159888 27159995 -215504358 + MIR SINE MIR 17 146 -62 2204 108 6 22 chr1 27160521 27160837 -215503516 - AluSx SINE Alu -1 311 1 401 339 85 40 chr1 27160953 27161130 -215503223 - MER91A DNA MER1_type -11 185 1 212 246 143 56 chr1 27161143 27161269 -215503084 + MIR3 SINE MIR 49 185 -23 198 281 73 12 chr1 27161267 27161349 -215503004 + L2 LINE L2 3220 3306 -7 * 279 147 0 174 chr1 27163865 27163907 -215500446 - L1ME2 LINE L1 -9 6155 6142 2308 102 13 0 chr1 27163907 27164210 -215500143 - AluSx SINE Alu -5 307 1 279 147 0 174 chr1 27164210 27164276 -215500077 - L1ME2 LINE L1 -22 6142 6066 236 125 0 0 chr1 27164284 27164324 -215500029 - MER3 DNA MER1_type -159 50 11 2809 202 61 61 chr1 27164371 27164442 -215499911 - L1ME2 LINE L1 -184 5980 5910 1653 183 22 39 chr1 27164442 27164753 -215499600 + AluJo SINE Alu 1 306 -6 2809 202 61 61 chr1 27164753 27165257 -215499096 - L1ME2 LINE L1 -254 5910 5407 2520 84 0 0 chr1 27165257 27165566 -215498787 - AluY SINE Alu -2 309 1 2809 202 61 61 chr1 27165566 27166190 -215498163 - L1ME2 LINE L1 -757 5407 4784 1999 137 55 0 chr1 27166190 27166483 -215497870 - AluSx SINE Alu -3 309 1 2809 202 61 61 chr1 27166483 27166659 -215497694 - L1ME2 LINE L1 -1380 4784 4609 1608 173 3 50 chr1 27166659 27166960 -215497393 + AluJb SINE Alu 1 287 -25 2809 202 61 61 chr1 27166960 27167197 -215497156 - L1ME2 LINE L1 -1555 4609 4353 2373 110 0 0 chr1 27167207 27167516 -215496837 - AluSq SINE Alu -4 309 1 13668 175 34 25 chr1 27167525 27168354 -215495999 - L1PB3 LINE L1 -7 6863 6043 1969 116 58 4 chr1 27168354 27168629 -215495724 - AluSx SINE Alu -22 290 1 13668 175 34 25 chr1 27168629 27169856 -215494497 - L1PB3 LINE L1 -827 6043 4829 2100 126 0 10 chr1 27169856 27170176 -215494177 - AluSx SINE Alu 0 317 1 13668 175 34 25 chr1 27170176 27170724 -215493629 - L1PB3 LINE L1 -2041 4829 4288 1733 134 4 30 chr1 27170724 27170986 -215493367 - AluSx SINE Alu -57 255 1 13668 175 34 25 chr1 27170986 27171768 -215492585 - L1PB3 LINE L1 -2582 4288 3515 2379 102 3 0 chr1 27171768 27172073 -215492280 - AluSc SINE Alu -3 306 1 13668 175 34 25 chr1 27172073 27172898 -215491455 - L1PB3 LINE L1 -3355 3515 2589 2095 230 59 22 chr1 27172897 27173444 -215490909 - L1ME LINE L1 -1757 4323 3710 * 1939 130 3 11 chr1 27173444 27173758 -215490595 + AluSx SINE Alu 1 312 0 2095 230 59 22 chr1 27173758 27173910 -215490443 - L1ME LINE L1 -2370 3710 3565 665 210 8 0 chr1 27173939 27174063 -215490290 - FLAM_A SINE Alu -8 134 10 538 280 69 47 chr1 27174078 27174335 -215490018 - L1ME LINE L1 -2534 3546 3279 2217 116 3 35 chr1 27174335 27174653 -215489700 - AluSx SINE Alu 0 312 5 538 280 69 47 chr1 27174653 27174713 -215489640 - L1ME LINE L1 -2801 3279 3222 4904 52 17 2 chr1 27174762 27175778 -215488575 - MER11A LTR ERVK 0 1266 1 2283 120 3 0 chr1 27175781 27176089 -215488264 + AluSx SINE Alu 1 309 -3 236 160 0 0 chr1 27176101 27176151 -215488202 - L1ME LINE L1 -2912 3168 3119 22 0 0 0 chr1 27176159 27176181 -215488172 + AT_rich Low_complexity Low_complexity 1 22 0 3290 256 68 26 chr1 27176271 27178420 -215485933 - L1ME LINE L1 -3301 2779 527 484 268 21 49 chr1 27180439 27180581 -215483772 - MER5B DNA MER1_type -13 165 28 237 33 0 0 chr1 27182139 27182169 -215482184 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1991 123 0 53 chr1 27182177 27182479 -215481874 - AluSq SINE Alu -27 286 1 261 0 0 0 chr1 27182495 27182524 -215481829 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1458 94 0 11 chr1 27182524 27182715 -215481638 - AluSq SINE Alu -124 189 1 298 326 141 35 chr1 27183242 27183406 -215480947 - L2 LINE L2 -893 2421 2276 198 0 0 0 chr1 27183406 27183428 -215480925 + (TA)n Simple_repeat Simple_repeat 2 23 0 1889 136 26 13 chr1 27183428 27183730 -215480623 - AluJb SINE Alu -6 306 1 298 326 141 35 chr1 27183730 27183911 -215480442 - L2 LINE L2 -1037 2277 2038 2679 191 70 26 chr1 27185337 27185954 -215478399 - L1MB5 LINE L1 -6 6168 5525 223 330 130 9 chr1 27187130 27187245 -215477108 - MIR SINE MIR -114 148 20 2185 115 3 3 chr1 27188551 27188846 -215475507 - AluSx SINE Alu -17 295 1 288 277 270 7 chr1 27191577 27191725 -215472628 + MIR SINE MIR 76 262 0 1537 161 0 40 chr1 27191725 27191974 -215472379 - AluJb SINE Alu -73 239 1 1873 177 6 3 chr1 27191976 27192287 -215472066 - AluJb SINE Alu 0 312 1 756 217 48 14 chr1 27192752 27192959 -215471394 + MER20 DNA MER1_type 6 219 0 2430 92 0 0 chr1 27193550 27193853 -215470500 - AluSc SINE Alu -6 303 1 375 260 60 10 chr1 27194075 27194175 -215470178 + MIR3 SINE MIR 73 177 -31 2301 106 7 0 chr1 27195004 27195306 -215469047 - AluSx SINE Alu -8 304 1 2510 68 0 0 chr1 27195737 27196033 -215468320 - AluY SINE Alu -15 296 1 405 241 0 52 chr1 27197109 27197225 -215467128 - MIR SINE MIR -123 139 30 1770 168 0 14 chr1 27197366 27197663 -215466690 - AluJb SINE Alu -19 293 1 1971 209 126 10 chr1 27198628 27199028 -215465325 - MER63C DNA MER1_type -158 902 550 2240 98 4 0 chr1 27199028 27199305 -215465048 + AluSp SINE Alu 1 278 -35 2381 61 47 7 chr1 27199305 27199602 -215464751 - AluY SINE Alu -2 309 1 2110 132 0 0 chr1 27199612 27199899 -215464454 - AluJb SINE Alu -25 287 1 1971 209 126 10 chr1 27199899 27200065 -215464288 - MER63C DNA MER1_type -517 543 257 404 225 159 53 chr1 27200200 27200351 -215464002 - L2 LINE L2 0 3313 3147 359 210 180 78 chr1 27200999 27201166 -215463187 + L2 LINE L2 3130 3313 0 838 129 32 8 chr1 27201560 27201684 -215462669 + FLAM_C SINE Alu 3 129 -14 2050 84 9 100 chr1 27201688 27202009 -215462344 + AluSx SINE Alu 1 292 -20 203 0 0 36 chr1 27202010 27202025 -215462328 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 203 0 0 36 chr1 27202025 27202053 -215462300 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr1 27202109 27202138 -215462215 + AT_rich Low_complexity Low_complexity 1 29 0 201 298 53 0 chr1 27202159 27202216 -215462137 + L2 LINE L2 3188 3247 -25 1959 128 69 9 chr1 27202226 27202546 -215461807 - MER44D DNA MER2_type 0 609 1 22 0 0 0 chr1 27203169 27203191 -215461162 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 27204764 27204786 -215459567 + (T)n Simple_repeat Simple_repeat 1 22 0 2332 99 0 3 chr1 27206110 27206413 -215457940 + AluSx SINE Alu 1 302 -10 670 287 158 4 chr1 27207105 27207370 -215456983 + L2 LINE L2 3005 3310 -3 2547 64 0 10 chr1 27207455 27207766 -215456587 - AluY SINE Alu -3 308 1 582 257 29 38 chr1 27208175 27208390 -215455963 + MIR SINE MIR 41 254 -8 1577 181 0 59 chr1 27208396 27208699 -215455654 + AluJo SINE Alu 4 288 -24 204 187 33 132 chr1 27209567 27209658 -215454695 + MIR SINE MIR 1 82 -180 457 241 157 60 chr1 27209737 27209796 -215454557 + MIR SINE MIR 15 67 -195 1877 161 0 7 chr1 27209796 27210087 -215454266 - AluJb SINE Alu -23 289 1 457 241 157 60 chr1 27210087 27210243 -215454110 + MIR SINE MIR 67 251 -11 208 306 156 69 chr1 27210311 27210471 -215453882 - L2 LINE L2 -36 3236 3063 1557 162 101 85 chr1 27210611 27210782 -215453571 - MLT1D LTR MaLR 0 505 338 3106 158 10 57 chr1 27210782 27211363 -215452990 - MLT2B3 LTR ERVL 0 554 1 1557 162 101 85 chr1 27211363 27211685 -215452668 - MLT1D LTR MaLR -167 338 4 209 344 143 11 chr1 27211774 27212123 -215452230 - L2 LINE L2 -538 2776 2382 646 257 214 0 chr1 27212259 27212465 -215451888 + MIR SINE MIR 2 251 -11 521 208 73 25 chr1 27212455 27212596 -215451757 - MIR SINE MIR -64 144 20 * 192 330 45 11 chr1 27212605 27212693 -215451660 + MIR SINE MIR 161 251 -11 197 261 65 65 chr1 27212708 27212800 -215451553 + MIR SINE MIR 121 212 -50 745 306 102 25 chr1 27213251 27213921 -215450432 - L2 LINE L2 -2 3270 2545 4667 79 8 21 chr1 27213998 27214656 -215449697 - L1PB2 LINE L1 -3 6148 5500 707 240 69 6 chr1 27214665 27214840 -215449513 - MIR SINE MIR -14 248 63 294 238 211 27 chr1 27214851 27214998 -215449355 - MER5A DNA MER1_type -7 182 9 255 61 0 0 chr1 27216320 27216353 -215448000 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 266 84 84 chr1 27216550 27216693 -215447660 + MIR3 SINE MIR 66 208 0 243 0 0 0 chr1 27216755 27216782 -215447571 + (T)n Simple_repeat Simple_repeat 1 27 0 605 234 157 4 chr1 27216922 27217170 -215447183 - L1ME4a LINE L1 -24 6097 5812 529 294 107 10 chr1 27217451 27217740 -215446613 + L1ME4a LINE L1 5579 5895 -226 333 89 11 56 chr1 27217880 27217970 -215446383 + (GA)n Simple_repeat Simple_repeat 2 87 0 440 121 25 242 chr1 27218485 27218766 -215445587 - L1MC4 LINE L1 -16 8026 7807 251 111 0 22 chr1 27218815 27218860 -215445493 + Alu SINE Alu 259 302 -6 255 170 0 0 chr1 27218860 27218907 -215445446 + (TA)n Simple_repeat Simple_repeat 1 47 0 3295 165 25 40 chr1 27218907 27218974 -215445379 - L1MB7 LINE L1 -25 6159 6092 2271 114 0 0 chr1 27218974 27219271 -215445082 - AluSx SINE Alu -15 297 1 3295 165 25 40 chr1 27219271 27219729 -215444624 - L1MB7 LINE L1 -92 6092 5645 2176 174 147 58 chr1 27219729 27219852 -215444501 - MER68 LTR ERV1 0 562 451 2077 128 3 16 chr1 27219852 27220165 -215444188 + AluSp SINE Alu 5 313 0 2176 174 147 58 chr1 27220165 27220557 -215443796 - MER68 LTR ERV1 -111 451 1 3295 165 25 40 chr1 27220557 27220746 -215443607 - L1MB7 LINE L1 -539 5645 5455 469 365 75 56 chr1 27220749 27221305 -215443048 + L3 LINE CR1 262 828 -749 273 279 132 23 chr1 27221553 27221664 -215442689 + L3 LINE CR1 1346 1474 -103 2340 117 0 0 chr1 27221664 27221962 -215442391 + AluSx SINE Alu 1 298 -14 273 279 132 23 chr1 27221962 27221979 -215442374 + L3 LINE CR1 1474 1488 -89 245 208 69 69 chr1 27222323 27222395 -215441958 - L2 LINE L2 -8 3305 3234 203 253 110 34 chr1 27222487 27222633 -215441720 - L2 LINE L2 -206 3066 2910 320 250 170 0 chr1 27223364 27223476 -215440877 + MIR3 SINE MIR 33 163 -45 978 129 76 0 chr1 27223770 27223941 -215440412 + MER5A DNA MER1_type 3 186 -3 229 223 55 49 chr1 27224147 27224248 -215440105 - MIR SINE MIR -102 106 8 242 344 73 26 chr1 27224620 27224771 -215439582 - L2 LINE L2 -38 3234 3077 374 321 58 0 chr1 27224832 27224969 -215439384 + MIR SINE MIR 29 173 -89 282 275 55 11 chr1 27225001 27225092 -215439261 - L2 LINE L2 -188 3084 2990 687 232 0 0 chr1 27225903 27226045 -215438308 + FLAM_A SINE Alu 1 142 0 552 241 137 30 chr1 27226835 27227105 -215437248 - L1ME4a LINE L1 -215 5906 5608 365 309 38 1 chr1 27227537 27227672 -215436681 + MIR SINE MIR 4 134 -74 229 299 0 15 chr1 27228018 27228085 -215436268 - L2 LINE L2 -31 3241 3176 384 274 111 7 chr1 27228199 27228334 -215436019 + MIR SINE MIR 13 161 -101 2395 93 0 0 chr1 27229197 27229498 -215434855 - AluSg SINE Alu -8 302 2 206 288 15 15 chr1 27229569 27229635 -215434718 + MIR SINE MIR 20 85 -177 227 279 47 0 chr1 27229663 27229749 -215434604 + MIR SINE MIR 173 262 0 191 301 36 12 chr1 27229842 27229925 -215434428 + MIR SINE MIR 111 195 -67 2176 127 13 0 chr1 27229943 27230251 -215434102 + AluSx SINE Alu 1 312 0 964 273 41 0 chr1 27230254 27230474 -215433879 + MIR SINE MIR 28 256 -6 644 256 36 10 chr1 27230899 27231094 -215433259 - MIR3 SINE MIR -4 204 5 620 157 128 0 chr1 27231320 27231422 -215432931 - FLAM_C SINE Alu -18 115 1 271 287 53 32 chr1 27231445 27231539 -215432814 - MIR SINE MIR -80 182 87 2303 138 28 35 chr1 27231875 27232256 -215432097 - Tigger2a DNA MER2_type -2274 434 55 2100 134 3 7 chr1 27232256 27232555 -215431798 + AluSx SINE Alu 1 298 -14 2303 138 28 35 chr1 27232555 27232602 -215431751 - Tigger2a DNA MER2_type -2653 55 9 820 266 46 18 chr1 27232631 27232882 -215431471 + MIR SINE MIR 1 256 -6 269 192 19 0 chr1 27232942 27232994 -215431359 + L2 LINE L2 3220 3272 0 549 219 31 23 chr1 27233744 27233872 -215430481 + MIR SINE MIR 29 157 -105 273 240 164 0 chr1 27234683 27234787 -215429566 + MIR SINE MIR 32 152 -56 1009 179 44 88 chr1 27235341 27235538 -215428815 - L1ME3 LINE L1 -1 6161 5980 2067 142 3 19 chr1 27235538 27235855 -215428498 - AluJo SINE Alu 0 312 1 1009 179 44 88 chr1 27235855 27235954 -215428399 - L1ME3 LINE L1 -182 5980 5878 2747 135 7 52 chr1 27236053 27236592 -215427761 - L1MB8 LINE L1 -141 6037 5523 816 254 25 8 chr1 27236589 27236825 -215427528 - L1ME3 LINE L1 -465 5705 5466 * 433 256 83 43 chr1 27237168 27237339 -215427014 + MIR SINE MIR 12 146 -62 343 307 77 91 chr1 27237360 27237578 -215426775 - L2 LINE L2 -21 3251 3031 2254 108 7 0 chr1 27237578 27237873 -215426480 + AluSg SINE Alu 1 297 -13 343 307 77 91 chr1 27237873 27237933 -215426420 - L2 LINE L2 -241 3031 2972 2269 114 23 0 chr1 27237933 27238239 -215426114 + AluSp SINE Alu 1 313 0 343 307 77 91 chr1 27238239 27238376 -215425977 - L2 LINE L2 -300 2972 2841 581 210 210 9 chr1 27239862 27240091 -215424262 - ORSL DNA AcHobo 0 275 1 265 344 133 7 chr1 27240287 27240438 -215423915 - MIR SINE MIR -71 191 22 2160 131 0 0 chr1 27240691 27240996 -215423357 + AluSx SINE Alu 6 310 -2 783 211 96 24 chr1 27241476 27241684 -215422669 + MIR SINE MIR 13 235 -27 258 263 68 51 chr1 27241740 27241858 -215422495 + MIR3 SINE MIR 35 154 -54 423 338 7 19 chr1 27241889 27242043 -215422310 - MER5B DNA MER1_type -24 154 3 2413 97 3 0 chr1 27242308 27242607 -215421746 + AluSp SINE Alu 1 300 -13 308 336 31 44 chr1 27244195 27244516 -215419837 - L1ME4a LINE L1 -180 5941 5625 744 238 76 24 chr1 27244516 27244572 -215419781 - MIR SINE MIR -10 252 200 1664 193 11 0 chr1 27244572 27244873 -215419480 + AluJo SINE Alu 1 304 0 744 238 76 24 chr1 27244873 27245024 -215419329 - MIR SINE MIR -62 200 32 3852 131 11 7 chr1 27246901 27247511 -215416842 - MER41B LTR ERV1 0 635 23 2242 107 10 0 chr1 27247511 27247809 -215416544 + AluSq SINE Alu 1 301 -12 239 216 20 0 chr1 27248270 27248321 -215416032 + L2 LINE L2 3262 3313 0 225 0 0 0 chr1 27248625 27248650 -215415703 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 2454 92 0 0 chr1 27248651 27248954 -215415399 - AluSq SINE Alu -10 303 1 538 274 101 10 chr1 27249086 27249294 -215415059 + MIR SINE MIR 36 262 0 271 260 138 8 chr1 27249375 27249498 -215414855 - MIR SINE MIR 0 262 124 188 324 59 0 chr1 27249799 27249867 -215414486 + MIR3 SINE MIR 85 156 -52 1174 267 71 2 chr1 27249870 27250280 -215414073 - MLT1H LTR MaLR 0 549 8 180 191 106 0 chr1 27250498 27250545 -215413808 - L2 LINE L2 -3 3310 3259 232 264 69 0 chr1 27250989 27251061 -215413292 + L2 LINE L2 3196 3272 0 340 169 26 169 chr1 27251930 27252084 -215412269 - MIR SINE MIR -50 212 81 395 285 111 17 chr1 27252177 27252349 -215412004 - MIR SINE MIR -44 218 31 702 297 93 41 chr1 27253806 27254342 -215410011 - MLT1K LTR MaLR 0 588 25 238 311 85 28 chr1 27254377 27254483 -215409870 - L2 LINE L2 0 3272 3161 214 125 0 0 chr1 27254544 27254576 -215409777 - L2 LINE L2 -20 3252 3221 1991 201 64 10 chr1 27254708 27255191 -215409162 - MLT1J LTR MaLR -2 509 1 1568 177 76 11 chr1 27255246 27255523 -215408830 - AluJb SINE Alu -17 295 1 2128 229 78 31 chr1 27255629 27256137 -215408216 - L1ME1 LINE L1 -33 6133 5650 1831 160 0 39 chr1 27256137 27256443 -215407910 + AluJb SINE Alu 1 294 -18 2128 229 78 31 chr1 27256443 27256478 -215407875 - L1ME1 LINE L1 -516 5650 5618 2287 85 41 0 chr1 27256478 27256772 -215407581 - AluSp SINE Alu -7 306 1 2128 229 78 31 chr1 27256772 27256908 -215407445 - L1ME1 LINE L1 -548 5618 5421 243 0 0 0 chr1 27256908 27256935 -215407418 + (CA)n Simple_repeat Simple_repeat 2 28 0 1108 267 54 14 chr1 27256938 27257309 -215407044 - HAL1 LINE L1 -299 2208 1823 3646 206 63 72 chr1 27257337 27257960 -215406393 - L1MB7 LINE L1 -1 6183 5556 342 0 0 0 chr1 27257960 27257998 -215406355 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2188 99 0 0 chr1 27257998 27258281 -215406072 - AluSq SINE Alu -30 283 1 1775 168 10 10 chr1 27258288 27258636 -215405717 - AluJo SINE Alu 0 312 1 3646 206 63 72 chr1 27258636 27258689 -215405664 - L1MB7 LINE L1 -633 5551 5499 216 0 0 0 chr1 27258689 27258713 -215405640 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1955 149 0 0 chr1 27258717 27258992 -215405361 - AluSx SINE Alu -37 275 1 3646 206 63 72 chr1 27258992 27259114 -215405239 - L1MB7 LINE L1 -688 5496 5374 2308 121 3 0 chr1 27259114 27259419 -215404934 - AluSx SINE Alu -6 306 1 3646 206 63 72 chr1 27259419 27260073 -215404280 - L1MB7 LINE L1 -810 5374 4716 497 217 28 0 chr1 27260073 27260179 -215404174 - FLAM_C SINE Alu -18 125 17 3646 206 63 72 chr1 27260179 27260801 -215403552 - L1MB7 LINE L1 -1468 4716 4012 * 3896 235 86 82 chr1 27260795 27262568 -215401785 - HAL1 LINE L1 -721 1786 8 196 282 39 87 chr1 27262593 27262696 -215401657 + MIR SINE MIR 110 207 -55 2339 90 10 0 chr1 27262935 27263234 -215401119 - AluSq SINE Alu -11 302 1 426 288 196 22 chr1 27263364 27263593 -215400760 - MLT1H LTR MaLR -278 271 3 442 311 174 13 chr1 27264163 27264468 -215399885 - L2 LINE L2 -2 3270 2917 449 281 102 6 chr1 27265512 27265671 -215398682 + MIR SINE MIR 20 193 -68 1660 213 0 3 chr1 27265682 27265982 -215398371 + AluJb SINE Alu 1 299 -13 192 104 0 125 chr1 27266077 27266125 -215398228 + MIR SINE MIR 76 117 -145 715 274 58 0 chr1 27267370 27267560 -215396793 - MLT1J1 LTR MaLR -8 438 238 408 263 102 0 chr1 27267563 27267681 -215396672 - MLT1J2 LTR MaLR -255 195 66 318 231 11 11 chr1 27268132 27268223 -215396130 + L2 LINE L2 2919 3009 -263 382 239 54 0 chr1 27268273 27268365 -215395988 - MIR SINE MIR -8 254 158 426 133 0 0 chr1 27268372 27268447 -215395906 - Alu SINE Alu -2 310 236 2128 100 0 4 chr1 27268447 27268718 -215395635 - AluSc SINE Alu -39 270 1 276 296 74 9 chr1 27268724 27268832 -215395521 - MIR SINE MIR -63 145 31 269 335 49 18 chr1 27269713 27269877 -215394476 - MIR SINE MIR -34 228 60 1946 129 28 3 chr1 27269943 27270230 -215394123 + AluJb SINE Alu 1 294 -18 420 20 0 0 chr1 27270232 27270281 -215394072 + (CAT)n Simple_repeat Simple_repeat 2 50 0 374 326 16 8 chr1 27270381 27270510 -215393843 - MIR SINE MIR -112 150 21 198 362 49 38 chr1 27270789 27270974 -215393379 - L2 LINE L2 -5 3267 3081 450 309 75 15 chr1 27271242 27271443 -215392910 + MIR SINE MIR 6 218 -44 288 254 32 0 chr1 27272611 27272674 -215391679 + MIR SINE MIR 88 152 -110 2547 71 0 0 chr1 27272698 27273007 -215391346 - AluY SINE Alu -2 309 1 2181 144 0 0 chr1 27273025 27273337 -215391016 - AluSx SINE Alu 0 312 1 241 301 6 60 chr1 27273789 27273972 -215390381 - L2 LINE L2 -185 3087 2915 1919 137 0 20 chr1 27274039 27274331 -215390022 + AluSx SINE Alu 1 286 -26 330 348 0 0 chr1 27274343 27274432 -215389921 - L1MC4 LINE L1 -1340 6702 6614 * 383 320 0 0 chr1 27274378 27274481 -215389872 + L1MC4 LINE L1 6614 6716 -1326 424 272 76 76 chr1 27275324 27275427 -215388926 - MIR SINE MIR -16 246 144 1946 171 0 0 chr1 27275427 27275731 -215388622 - AluJb SINE Alu -4 308 5 424 272 76 76 chr1 27275731 27275851 -215388502 - MIR SINE MIR -117 145 23 269 230 54 0 chr1 27275904 27275978 -215388375 + MIR SINE MIR 50 127 -81 411 361 65 36 chr1 27276438 27276884 -215387469 - L2 LINE L2 0 3272 2814 1400 246 67 80 chr1 27277359 27277788 -215386565 - MLT1G1 LTR MaLR -2 593 173 1631 133 118 19 chr1 27277788 27278059 -215386294 + AluJo SINE Alu 1 298 -14 1400 246 67 80 chr1 27278059 27278230 -215386123 - MLT1G1 LTR MaLR -422 173 1 1044 236 78 63 chr1 27279133 27279328 -215385025 - L2 LINE L2 -409 2905 2714 312 27 0 0 chr1 27279328 27279365 -215384988 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2472 50 0 0 chr1 27279365 27279644 -215384709 - AluY SINE Alu -32 279 1 1044 236 78 63 chr1 27279644 27280065 -215384288 - L2 LINE L2 -599 2715 2279 1038 82 0 0 chr1 27280066 27280188 -215384165 - AluSg SINE Alu -188 122 1 557 228 67 22 chr1 27280197 27280377 -215383976 - L2 LINE L2 -1114 2200 2013 589 270 46 6 chr1 27281539 27281713 -215382640 - MIR SINE MIR -67 195 15 227 283 87 22 chr1 27282908 27283000 -215381353 + MIR3 SINE MIR 84 181 -27 227 79 26 0 chr1 27285480 27285518 -215378835 + (TA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr1 27285521 27285552 -215378801 + AT_rich Low_complexity Low_complexity 1 31 0 976 210 26 22 chr1 27487557 27487828 -215176525 + L1M4 LINE L1 4966 5237 -909 283 100 0 0 chr1 27487938 27487978 -215176375 + Alu SINE Alu 7 46 -262 21 0 0 0 chr1 27488010 27488031 -215176322 + AT_rich Low_complexity Low_complexity 1 21 0 241 287 0 29 chr1 27488982 27489118 -215175235 + (CGGGG)n Simple_repeat Simple_repeat 4 135 0 1685 124 34 34 chr1 27489906 27490197 -215174156 + AluSx SINE Alu 18 308 -4 1423 151 77 18 chr1 27490207 27490479 -215173874 + AluJo SINE Alu 2 289 -13 2198 99 7 0 chr1 27490900 27491204 -215173149 - AluSp SINE Alu -7 306 1 2215 121 0 0 chr1 27491344 27491650 -215172703 - AluSx SINE Alu -6 306 1 685 225 0 0 chr1 27491659 27491788 -215172565 - FLAM_A SINE Alu -1 141 13 21 0 0 0 chr1 27491796 27491817 -215172536 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 27491909 27491939 -215172414 + AT_rich Low_complexity Low_complexity 1 30 0 1712 118 4 0 chr1 27491988 27492233 -215172120 + AluSg SINE Alu 1 246 -64 21 36 0 0 chr1 27492670 27492698 -215171655 + GC_rich Low_complexity Low_complexity 1 28 0 351 267 100 8 chr1 27494927 27495047 -215169306 - MIR SINE MIR -12 250 120 2071 84 0 58 chr1 27495756 27496065 -215168288 - AluSc SINE Alu -18 291 1 1682 128 25 4 chr1 27496093 27496374 -215167979 + AluSx SINE Alu 1 287 -25 763 179 0 0 chr1 27496814 27496937 -215167416 - FRAM SINE Alu -30 146 24 1179 234 89 3 chr1 27496939 27497221 -215167132 + MER97c DNA MER1_type? 230 535 -555 310 210 121 9 chr1 27497201 27497222 -215167131 + MER97a DNA MER1_type? 781 798 -96 * 2355 90 0 0 chr1 27497222 27497532 -215166821 + AluY SINE Alu 1 310 -1 310 210 121 9 chr1 27497532 27497658 -215166695 + MER97a DNA MER1_type? 798 891 -3 1215 159 56 21 chr1 27497723 27497884 -215166469 - AluJo SINE Alu -8 304 131 2131 94 0 23 chr1 27497884 27498183 -215166170 - AluSg SINE Alu -18 292 1 1215 159 56 21 chr1 27498183 27498254 -215166099 - AluJo SINE Alu -181 131 64 1804 150 20 0 chr1 27498257 27498551 -215165802 - AluJb SINE Alu -12 300 1 387 252 17 34 chr1 27498554 27498673 -215165680 - MER96B DNA MER1_type? -300 117 1 477 213 0 90 chr1 27498673 27498752 -215165601 - MIR SINE MIR -70 192 126 2138 93 3 17 chr1 27498752 27499054 -215165299 + AluSc SINE Alu 1 298 -11 477 213 0 90 chr1 27499054 27499096 -215165257 - MIR SINE MIR -136 126 82 889 122 15 0 chr1 27499102 27499233 -215165120 - AluSq/x SINE Alu -179 133 1 2275 99 3 0 chr1 27499243 27499547 -215164806 - AluSp SINE Alu -8 305 1 3284 98 14 8 chr1 27499547 27500037 -215164316 - Tigger1 DNA MER2_type -939 1479 987 378 42 0 0 chr1 27500037 27500085 -215164268 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 399 21 0 0 chr1 27500084 27500132 -215164221 + (GA)n Simple_repeat Simple_repeat 1 48 0 242 161 18 89 chr1 27500313 27500425 -215163928 + C-rich Low_complexity Low_complexity 5 108 0 333 268 31 41 chr1 27500826 27500923 -215163430 + L1MC4 LINE L1 6605 6700 -1342 829 120 0 0 chr1 27500936 27501053 -215163300 - FLAM_C SINE Alu -16 117 1 314 269 43 0 chr1 27501475 27501568 -215162785 - MIR SINE MIR -58 150 54 2077 62 22 4 chr1 27501580 27501853 -215162500 + AluY SINE Alu 17 294 -17 434 285 54 8 chr1 27501942 27502072 -215162281 + MIR SINE MIR 18 153 -109 1512 143 57 57 chr1 27502133 27502296 -215162057 - AluJo SINE Alu -12 300 135 2047 134 0 3 chr1 27502296 27502594 -215161759 - AluSc SINE Alu -12 297 1 1512 143 57 57 chr1 27502594 27502730 -215161623 - AluJo SINE Alu -176 136 1 1675 92 3 176 chr1 27502791 27502972 -215161381 - AluSc SINE Alu 0 299 215 2607 10 7 0 chr1 27502972 27503267 -215161086 - AluY SINE Alu -14 297 1 1675 92 3 176 chr1 27503267 27503451 -215160902 - AluSc SINE Alu -84 215 1 835 137 8 0 chr1 27503453 27503584 -215160769 - FAM SINE Alu -9 40 1 196 250 67 33 chr1 27503594 27503654 -215160699 - L2 LINE L2 -37 3276 3215 802 200 0 0 chr1 27503663 27503808 -215160545 + FRAM SINE Alu 21 165 -11 181 261 34 57 chr1 27503809 27503897 -215160456 - L2 LINE L2 -79 3234 3149 * 611 214 18 127 chr1 27503872 27504069 -215160284 - MIR SINE MIR 0 262 92 2031 88 3 72 chr1 27504069 27504389 -215159964 + AluSq SINE Alu 1 298 -15 611 214 18 127 chr1 27504389 27504420 -215159933 - MIR SINE MIR -170 92 59 267 232 43 51 chr1 27504595 27504733 -215159620 - L1MC4a LINE L1 -1898 5910 5774 320 222 42 0 chr1 27504819 27504891 -215159462 + MIR SINE MIR 80 154 -108 1932 86 10 51 chr1 27504903 27505220 -215159133 + AluY SINE Alu 2 306 0 189 195 0 0 chr1 27505342 27505383 -215158970 - L2 LINE L2 0 3313 3273 300 266 11 43 chr1 27506101 27506181 -215158172 + L3 LINE CR1 869 947 -630 2175 126 0 0 chr1 27506181 27506491 -215157862 + AluSx SINE Alu 2 311 -1 300 266 11 43 chr1 27506491 27506504 -215157849 + L3 LINE CR1 947 959 -618 226 337 0 47 chr1 27506769 27506855 -215157498 - L2 LINE L2 -60 3253 3172 335 332 215 0 chr1 27506898 27507112 -215157241 + L3 LINE CR1 1248 1507 -70 699 259 56 5 chr1 27507148 27507345 -215157008 - MIR SINE MIR -54 208 2 525 343 91 5 chr1 27507978 27508176 -215156177 - MIR SINE MIR -1 261 47 304 208 150 25 chr1 27508454 27508574 -215155779 - MIR SINE MIR -39 223 89 2142 102 0 0 chr1 27508582 27508876 -215155477 - AluSq SINE Alu -3 310 17 2320 80 3 0 chr1 27509102 27509404 -215154949 - AluSp SINE Alu -10 303 1 267 253 91 0 chr1 27511309 27511408 -215152945 + MIR SINE MIR 46 153 -109 2290 79 0 0 chr1 27512027 27512318 -215152035 - AluY SINE Alu -20 291 1 2120 90 3 27 chr1 27512704 27513004 -215151349 - AluY SINE Alu -2 309 17 1154 102 24 12 chr1 27515428 27515595 -215148758 + AluSx SINE Alu 1 169 -143 2017 138 3 10 chr1 27516056 27516367 -215147986 + AluSx SINE Alu 1 309 -3 1848 136 17 11 chr1 27516833 27517120 -215147233 + AluSx SINE Alu 5 293 -19 552 326 53 5 chr1 27517431 27517621 -215146732 - MIR SINE MIR -56 206 8 221 227 0 0 chr1 27517708 27517752 -215146601 + L2 LINE L2 3225 3268 -4 437 276 45 95 chr1 27518490 27518656 -215145697 + MIR SINE MIR 32 186 -76 2228 84 7 13 chr1 27518656 27518964 -215145389 + AluSx SINE Alu 1 306 -6 437 276 45 95 chr1 27518964 27519018 -215145335 + MIR SINE MIR 186 241 -21 239 366 79 30 chr1 27518994 27519196 -215145157 - L2 LINE L2 -27 3245 3034 * 312 351 61 8 chr1 27519248 27519379 -215144974 - MIR SINE MIR -66 196 59 234 282 42 14 chr1 27519400 27519471 -215144882 - L2 LINE L2 -229 3043 2971 294 295 4 24 chr1 27519883 27519988 -215144365 - MIR3 SINE MIR -40 168 86 338 277 30 0 chr1 27520365 27520466 -215143887 + MIR SINE MIR 79 182 -80 335 296 118 13 chr1 27520503 27520676 -215143677 + MIR SINE MIR 10 198 -62 368 266 133 0 chr1 27521348 27521461 -215142892 - MIR SINE MIR -21 241 114 374 320 45 36 chr1 27522191 27522438 -215141915 + MIR SINE MIR 14 262 0 396 246 18 35 chr1 27522999 27523113 -215141240 - MIR3 SINE MIR -27 181 70 322 330 23 28 chr1 27523139 27523315 -215141038 + L2 LINE L2 2917 3091 -181 1037 160 0 18 chr1 27523354 27523523 -215140830 - AluJo/FRAM SINE Alu 0 302 137 1181 128 25 91 chr1 27523523 27523582 -215140771 + AluJo SINE Alu 72 133 -179 2306 76 3 0 chr1 27523582 27523873 -215140480 - AluSp SINE Alu -21 292 1 1181 128 25 91 chr1 27523873 27524056 -215140297 + AluJo SINE Alu 133 298 -14 1974 123 3 3 chr1 27524057 27524350 -215140003 + AluSx SINE Alu 2 294 -18 1867 116 14 14 chr1 27525031 27525144 -215139209 + AluSx SINE Alu 24 136 -176 2342 76 3 0 chr1 27525144 27525445 -215138908 + AluSq SINE Alu 1 302 -11 1867 116 14 14 chr1 27525445 27525616 -215138737 + AluSx SINE Alu 135 308 -4 352 111 0 0 chr1 27525617 27525671 -215138682 - Tigger1 DNA MER2_type -1493 925 872 1862 147 3 10 chr1 27525671 27525964 -215138389 - AluSx SINE Alu -21 291 1 871 144 14 0 chr1 27525964 27526103 -215138250 - AluJo SINE Alu -171 141 1 3248 113 66 92 chr1 27526103 27526479 -215137874 - Tigger1 DNA MER2_type -1765 653 268 2135 92 0 3 chr1 27526479 27526761 -215137592 - AluSg SINE Alu -29 281 1 3248 113 66 92 chr1 27526761 27527010 -215137343 - Tigger1 DNA MER2_type -2150 268 45 1463 201 7 14 chr1 27527010 27527142 -215137211 + AluJo SINE Alu 5 136 -176 2029 119 7 13 chr1 27527142 27527477 -215136876 + AluSp SINE Alu 1 313 0 1463 201 7 14 chr1 27527477 27527633 -215136720 + AluJo SINE Alu 136 291 -21 3248 113 66 92 chr1 27527633 27527676 -215136677 - Tigger1 DNA MER2_type -2373 45 2 27 62 0 0 chr1 27527734 27527782 -215136571 + AT_rich Low_complexity Low_complexity 1 48 0 2790 16 0 0 chr1 27527790 27528103 -215136250 + AluYb8 SINE Alu 1 313 -5 440 250 97 61 chr1 27528109 27528305 -215136048 + MER102a DNA MER1_type 127 329 -1 185 323 52 10 chr1 27528305 27528401 -215135952 - MIR SINE MIR -57 151 52 2423 63 0 0 chr1 27528425 27528724 -215135629 - AluY SINE Alu -12 299 1 1984 91 60 14 chr1 27528727 27528875 -215135478 - AluSx SINE Alu -14 298 158 2496 47 0 10 chr1 27528875 27529176 -215135177 - AluY SINE Alu -13 298 1 1984 91 60 14 chr1 27529176 27529312 -215135041 - AluSx SINE Alu -154 158 1 350 328 45 7 chr1 27529386 27529599 -215134754 - MIR SINE MIR -5 257 39 290 176 129 35 chr1 27529933 27530018 -215134335 - MIR SINE MIR -98 164 72 262 203 42 208 chr1 27530124 27530454 -215133899 + L1MC5 LINE L1 7037 7282 -679 1675 126 73 40 chr1 27530454 27530597 -215133756 + AluJb SINE Alu 1 138 -174 2216 93 0 0 chr1 27530597 27530886 -215133467 + AluSg SINE Alu 1 289 -21 1675 126 73 40 chr1 27530886 27531043 -215133310 + AluJb SINE Alu 138 311 -1 262 203 42 208 chr1 27531043 27531140 -215133213 + L1MC5 LINE L1 7282 7393 -568 1944 118 36 0 chr1 27531146 27531426 -215132927 + AluSx SINE Alu 3 292 -20 2228 88 0 10 chr1 27531508 27531805 -215132548 + AluSg SINE Alu 1 294 -16 589 223 37 32 chr1 27531806 27531994 -215132359 + L1MC5 LINE L1 7388 7576 -385 1843 116 0 4 chr1 27532015 27532282 -215132071 + AluSg SINE Alu 1 266 -44 1427 170 147 8 chr1 27532433 27532698 -215131655 - AluJb SINE Alu 0 302 1 611 256 64 10 chr1 27533134 27533337 -215131016 - L2 LINE L2 -1 3312 3099 440 291 262 12 chr1 27533347 27533690 -215130663 - L2 LINE L2 -370 2944 2516 416 326 78 54 chr1 27533691 27533883 -215130470 + L1MC4a LINE L1 6223 6424 -1384 2366 77 3 0 chr1 27533883 27534183 -215130170 - AluSp SINE Alu -12 301 1 416 326 78 54 chr1 27534183 27534248 -215130105 + L1MC4a LINE L1 6424 6486 -1322 2371 93 23 0 chr1 27534370 27534672 -215129681 - AluSx SINE Alu -3 309 1 230 288 11 109 chr1 27534673 27534857 -215129496 - MIR SINE MIR -1 261 96 198 103 0 0 chr1 27535725 27535754 -215128599 + (TATG)n Simple_repeat Simple_repeat 4 32 0 465 137 0 0 chr1 27535755 27535828 -215128525 - FLAM_A SINE Alu -27 115 43 650 254 26 48 chr1 27535848 27536076 -215128277 + MIR SINE MIR 40 262 0 208 276 61 41 chr1 27536406 27536504 -215127849 + L3b LINE CR1 1294 1393 -190 313 204 80 0 chr1 27537201 27537289 -215127064 - MIR SINE MIR -61 201 107 200 281 35 0 chr1 27537941 27537998 -215126355 + MIR SINE MIR 154 212 -50 467 273 102 32 chr1 27538824 27539011 -215125342 - MIR SINE MIR -29 233 34 739 168 22 0 chr1 27540690 27540827 -215123526 - FLAM_C SINE Alu -3 140 1 1558 94 12 94 chr1 27542914 27543027 -215121326 - AluSx SINE Alu -79 233 112 2260 108 3 3 chr1 27543027 27543324 -215121029 - AluSp SINE Alu -16 297 1 2391 80 3 7 chr1 27543326 27543627 -215120726 - AluSc SINE Alu -9 300 1 1558 94 12 94 chr1 27543627 27543764 -215120589 - AluSx SINE Alu -201 111 1 268 331 59 7 chr1 27543833 27543969 -215120384 - L2 LINE L2 -127 3145 3003 29 0 0 0 chr1 27544000 27544029 -215120324 + AT_rich Low_complexity Low_complexity 1 29 0 2385 93 3 0 chr1 27545253 27545554 -215118799 + AluSc SINE Alu 1 302 -7 2362 81 0 31 chr1 27545612 27545935 -215118418 - AluSq SINE Alu 0 313 1 907 261 174 9 chr1 27545942 27546379 -215117974 - L1MC4a LINE L1 -1631 6177 5669 468 273 24 67 chr1 27547010 27547175 -215117178 + MIR SINE MIR 29 186 -76 358 323 69 8 chr1 27547513 27547643 -215116710 + MIR SINE MIR 13 150 -112 237 227 106 0 chr1 27547920 27547986 -215116367 + MIR3 SINE MIR 112 184 -24 221 250 0 3 chr1 27549040 27549102 -215115251 + MIR SINE MIR 10 70 -138 258 180 0 0 chr1 27549113 27549163 -215115190 + L2 LINE L2 3262 3311 -2 374 275 144 18 chr1 27549164 27549331 -215115022 + MIR SINE MIR 69 256 -6 218 310 0 13 chr1 27549491 27549587 -215114766 + MIR SINE MIR 50 143 -87 570 114 0 0 chr1 27550896 27550984 -215113369 + (TCCCC)n Simple_repeat Simple_repeat 4 91 0 1965 82 0 0 chr1 27550984 27551216 -215113137 - AluSx SINE Alu -25 287 56 265 257 274 11 chr1 27551339 27551518 -215112835 - L2 LINE L2 -219 3053 2828 553 209 20 85 chr1 27552444 27552507 -215111846 + MIR SINE MIR 20 86 -176 2037 123 3 43 chr1 27552507 27552807 -215111546 - AluSx SINE Alu -10 302 15 553 209 20 85 chr1 27552807 27552944 -215111409 + MIR SINE MIR 86 207 -55 1593 143 121 18 chr1 27552952 27553232 -215111121 + AluSg1 SINE Alu 1 309 0 226 184 0 0 chr1 27553361 27553399 -215110954 + MIR SINE MIR 204 241 -21 189 289 105 0 chr1 27553470 27553546 -215110807 - MIR SINE MIR -90 118 35 284 283 150 17 chr1 27553673 27553793 -215110560 - MIR3 SINE MIR -63 145 10 190 263 0 0 chr1 27555160 27555198 -215109155 - L2 LINE L2 -21 3292 3255 2076 123 3 3 chr1 27555222 27555514 -215108839 + AluSq SINE Alu 1 292 -21 425 311 17 0 chr1 27555529 27555648 -215108705 - MIR SINE MIR -62 200 80 500 133 42 17 chr1 27556129 27556249 -215108104 - AluSc SINE Alu -3 306 184 884 120 0 0 chr1 27556350 27556467 -215107886 - AluJb SINE Alu -179 133 17 292 167 42 14 chr1 27556481 27556553 -215107800 - MER97c DNA MER1_type? -993 97 24 2435 78 0 3 chr1 27556641 27556937 -215107416 - AluSg SINE Alu -15 295 1 1997 127 52 14 chr1 27556938 27557229 -215107124 - AluSx SINE Alu -10 302 1 293 279 66 44 chr1 27557293 27557429 -215106924 + MIR SINE MIR 53 191 -71 1795 176 33 0 chr1 27557856 27558194 -215106159 - AluJo SINE Alu 0 348 1 663 217 7 14 chr1 27558229 27558372 -215105981 - MLT1B LTR MaLR -43 347 206 907 205 60 0 chr1 27558445 27558645 -215105708 - MLT1A1 LTR MaLR 0 365 154 494 119 239 9 chr1 27558649 27558758 -215105595 - FLAM_C SINE Alu -1 142 9 1162 92 0 0 chr1 27558782 27558946 -215105407 - L1PA7 LINE L1 -2 6152 5989 1736 135 56 0 chr1 27558947 27559251 -215105102 - MER58B DNA MER1_type -10 331 11 456 182 68 0 chr1 27559266 27559354 -215104999 + L2 LINE L2 3209 3302 -11 189 0 0 0 chr1 27559625 27559646 -215104707 + (T)n Simple_repeat Simple_repeat 1 21 0 801 136 0 8 chr1 27560833 27560951 -215103402 + AluJb SINE Alu 1 117 -195 497 79 26 13 chr1 27560951 27561027 -215103326 - AluSc SINE Alu -144 165 89 2653 68 0 0 chr1 27561229 27561539 -215102814 - AluY SINE Alu -1 310 1 468 310 137 15 chr1 27561544 27561741 -215102612 - MIR SINE MIR -8 254 34 * 1057 269 92 14 chr1 27561737 27561934 -215102419 - L2 LINE L2 -5 3308 3128 2272 97 7 7 chr1 27561934 27562234 -215102119 - AluSx SINE Alu -12 300 1 1057 269 92 14 chr1 27562234 27562582 -215101771 - L2 LINE L2 -185 3128 2720 654 298 25 25 chr1 27562710 27562955 -215101398 + MIR SINE MIR 3 247 -15 1951 159 3 0 chr1 27562975 27563271 -215101082 - AluJo SINE Alu -11 301 5 2529 77 3 0 chr1 27563502 27563812 -215100541 + AluY SINE Alu 1 311 0 1193 139 9 79 chr1 27563987 27564203 -215100150 + AluJb SINE Alu 101 301 -11 220 314 114 38 chr1 27564226 27564331 -215100022 + MIR SINE MIR 3 115 -147 * 396 291 186 51 chr1 27564311 27564441 -215099912 - L2 LINE L2 -2 3270 3159 2348 81 10 7 chr1 27564441 27564737 -215099616 + AluSp SINE Alu 1 297 -16 396 291 186 51 chr1 27564737 27564989 -215099364 - L2 LINE L2 -113 3159 2854 355 187 66 0 chr1 27565507 27565598 -215098755 + MER53 DNA DNA 4 100 -89 978 105 0 92 chr1 27565793 27566021 -215098332 + AluSq SINE Alu 14 220 -93 197 282 105 57 chr1 27568204 27568328 -215096025 - MIR3 SINE MIR -12 196 67 250 238 107 48 chr1 27570094 27570178 -215094175 - MIR SINE MIR -124 138 50 235 180 0 40 chr1 27570953 27571003 -215093350 - MLT1L LTR MaLR -153 462 415 403 273 76 0 chr1 27571105 27571237 -215093116 - MLT1L LTR MaLR -337 278 137 1124 28 28 0 chr1 27571414 27571558 -215092795 + L1PA4 LINE L1 6005 6152 -3 481 161 32 11 chr1 27571615 27571708 -215092645 - FLAM_C SINE Alu -18 125 31 419 202 11 0 chr1 27571723 27571812 -215092541 - L1MB7 LINE L1 -43 6141 6052 301 246 0 0 chr1 27571832 27571889 -215092464 + L1MC4 LINE L1 6640 6696 -1346 1989 170 65 28 chr1 27571891 27571940 -215092413 - L1MB8 LINE L1 -121 6057 6011 1795 142 26 42 chr1 27571940 27572250 -215092103 - AluJb SINE Alu -7 305 1 1989 170 65 28 chr1 27572250 27572686 -215091667 - L1MB8 LINE L1 -167 6011 5608 2328 107 3 3 chr1 27572690 27572999 -215091354 - AluSp SINE Alu -4 309 1 2085 117 28 3 chr1 27572999 27573289 -215091064 - AluSq SINE Alu -16 297 1 2211 100 0 20 chr1 27573292 27573591 -215090762 - AluSg SINE Alu -2 308 16 2388 78 13 10 chr1 27573610 27573918 -215090435 - AluSx SINE Alu -3 309 1 238 230 14 14 chr1 27573918 27573992 -215090361 - L1MB8 LINE L1 -808 5366 5293 2172 110 0 10 chr1 27574065 27574364 -215089989 - AluSx SINE Alu -6 306 11 2106 139 7 3 chr1 27574364 27574673 -215089680 - AluSx SINE Alu -2 310 1 687 195 101 13 chr1 27574713 27574872 -215089481 - AluJb SINE Alu -11 301 129 1924 139 0 24 chr1 27574885 27575040 -215089313 - AluSx SINE Alu -25 287 130 2129 93 25 4 chr1 27575040 27575319 -215089034 - AluSx SINE Alu -22 290 6 2206 107 3 3 chr1 27575319 27575610 -215088743 - AluSq SINE Alu -22 291 1 1924 139 0 24 chr1 27575610 27575747 -215088606 - AluSx SINE Alu -180 132 1 1027 199 84 28 chr1 27575748 27575815 -215088538 - L1MB8 LINE L1 -866 5280 5218 1532 186 36 7 chr1 27575815 27576111 -215088242 - AluJb SINE Alu 0 304 1 1027 199 84 28 chr1 27576111 27576363 -215087990 - L1MB8 LINE L1 -928 5218 4942 350 305 75 54 chr1 27576480 27576648 -215087705 + L2 LINE L2 2233 2411 -903 3784 102 20 9 chr1 27576648 27576769 -215087584 - MER41A LTR ERV1 0 554 436 2054 146 10 3 chr1 27576769 27577078 -215087275 + AluSx SINE Alu 1 311 -1 3784 102 20 9 chr1 27577078 27577504 -215086849 - MER41A LTR ERV1 -118 436 1 350 305 75 54 chr1 27577504 27577630 -215086723 + L2 LINE L2 2411 2533 -781 333 263 44 18 chr1 27577635 27577749 -215086604 - L1MC5 LINE L1 -32 7929 7813 2304 71 0 11 chr1 27577845 27578126 -215086227 + AluY SINE Alu 2 279 -32 346 197 0 0 chr1 27578126 27578187 -215086166 - AluJ/FLAM SINE Alu -241 61 1 789 330 162 8 chr1 27578187 27578799 -215085554 + L2 LINE L2 953 1658 -1656 240 158 18 18 chr1 27578846 27578903 -215085450 - AluSp/q SINE Alu 0 303 247 218 236 56 0 chr1 27578918 27578990 -215085363 + T-rich Low_complexity Low_complexity 2 77 0 2542 48 0 3 chr1 27579303 27579593 -215084760 - AluY SINE Alu -22 289 1 668 178 17 106 chr1 27579612 27579731 -215084622 - L1PB4 LINE L1 -18 6138 6039 2390 101 3 0 chr1 27579731 27580039 -215084314 - AluSp SINE Alu 0 313 5 668 178 17 106 chr1 27580039 27580099 -215084254 - L1PB4 LINE L1 -117 6039 5975 418 232 62 0 chr1 27580194 27580306 -215084047 + MER5A DNA MER1_type 26 144 -45 2263 92 6 47 chr1 27580314 27580631 -215083722 + AluSg SINE Alu 1 304 -6 2096 151 0 0 chr1 27580641 27580939 -215083414 + AluJb SINE Alu 1 298 -14 481 218 159 22 chr1 27581000 27581207 -215083146 + MLT1L LTR MaLR 197 458 -97 2059 174 52 48 chr1 27581245 27581550 -215082803 + Tigger7 DNA MER2_type 1 310 -423 2475 76 0 0 chr1 27581550 27581852 -215082501 + AluY SINE Alu 1 302 -9 2059 174 52 48 chr1 27581852 27581984 -215082369 + Tigger7 DNA MER2_type 310 440 -293 2029 120 31 10 chr1 27581985 27582276 -215082077 + AluSg SINE Alu 1 297 -13 446 48 105 0 chr1 27582276 27582400 -215081953 + (TA)n Simple_repeat Simple_repeat 1 137 0 265 198 66 91 chr1 27582342 27582449 -215081904 + Charlie5 DNA MER1_type 2433 2534 -90 * 2495 82 3 0 chr1 27582449 27582754 -215081599 - AluSp SINE Alu -7 306 1 265 198 66 91 chr1 27582754 27582843 -215081510 + Charlie5 DNA MER1_type 2534 2624 0 463 175 103 10 chr1 27582874 27582971 -215081382 - L2 LINE L2 -16 3297 3192 193 220 17 34 chr1 27582969 27583028 -215081325 - MIR SINE MIR -67 195 138 * 1587 164 51 18 chr1 27583050 27583325 -215081028 - AluJo SINE Alu -28 284 1 32 0 0 0 chr1 27583327 27583359 -215080994 + AT_rich Low_complexity Low_complexity 1 32 0 825 142 0 8 chr1 27583375 27583509 -215080844 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr1 27583509 27583545 -215080808 + AT_rich Low_complexity Low_complexity 1 36 0 1218 132 82 0 chr1 27583552 27583734 -215080619 - AluJo SINE Alu -30 282 86 531 331 7 0 chr1 27583735 27583877 -215080476 - MIR SINE MIR -110 152 10 381 290 45 19 chr1 27584393 27584548 -215079805 - MIR SINE MIR -80 182 24 2080 122 0 31 chr1 27584723 27585034 -215079319 - AluSx SINE Alu 0 306 5 2130 110 0 0 chr1 27585047 27585320 -215079033 - AluSx SINE Alu -26 286 14 512 252 31 16 chr1 27585462 27585589 -215078764 + MIR SINE MIR 16 144 -64 565 233 16 8 chr1 27585907 27586036 -215078317 - L2 LINE L2 -1 3312 3183 2348 100 3 0 chr1 27586093 27586392 -215077961 + AluSp SINE Alu 1 300 -13 212 300 0 0 chr1 27586669 27586729 -215077624 + L2 LINE L2 2449 2508 -806 * 366 286 8 42 chr1 27586714 27586833 -215077520 - L2 LINE L2 -5 3267 3153 249 291 92 0 chr1 27586840 27586981 -215077372 + L2 LINE L2 2537 2690 -624 390 112 7 17 chr1 27586992 27587074 -215077279 - Alu SINE Alu -1 301 243 1854 254 104 14 chr1 27587200 27587823 -215076530 + HAL1 LINE L1 19 697 -1810 308 158 0 0 chr1 27587826 27587883 -215076470 + HAL1 LINE L1 971 1027 -1480 1245 155 0 0 chr1 27587883 27588070 -215076283 - AluSg/x SINE Alu -5 305 119 2275 89 7 0 chr1 27588130 27588433 -215075920 + AluSg SINE Alu 1 305 0 590 246 24 0 chr1 27588476 27588643 -215075710 + HAL1 LINE L1 1093 1263 -1244 1554 158 15 11 chr1 27588656 27588929 -215075424 + AluJb SINE Alu 1 274 -38 1804 156 3 30 chr1 27588961 27589100 -215075253 + AluJb SINE Alu 1 142 -170 2487 80 0 13 chr1 27589100 27589414 -215074939 + AluY SINE Alu 2 311 0 1804 156 3 30 chr1 27589414 27589576 -215074777 + AluJb SINE Alu 142 294 -18 1604 160 0 16 chr1 27589578 27589828 -215074525 + AluSq SINE Alu 1 246 -67 1067 86 0 0 chr1 27589830 27589969 -215074384 + AluSg/x SINE Alu 170 308 -2 2182 98 7 7 chr1 27589974 27590261 -215074092 + AluSx SINE Alu 9 295 -17 1143 175 130 29 chr1 27590280 27590526 -215073827 - AluJo SINE Alu -12 300 30 400 243 39 0 chr1 27590582 27590685 -215073668 + HAL1 LINE L1 1824 1930 -577 1009 241 67 82 chr1 27590692 27591095 -215073258 + LTR16A LTR ERVL 1 397 -53 2470 74 0 3 chr1 27591150 27591449 -215072904 - AluY SINE Alu -13 298 1 310 206 342 22 chr1 27591449 27591677 -215072676 + HAL1 LINE L1 1941 2241 -266 1335 121 9 40 chr1 27591688 27591911 -215072442 + AluJb SINE Alu 85 300 -12 569 203 0 14 chr1 27591913 27592051 -215072302 + HAL1 LINE L1 2258 2393 -114 920 128 8 8 chr1 27592073 27592206 -215072147 - FLAM_C SINE Alu -10 133 1 227 309 144 10 chr1 27592272 27592369 -215071984 + L2 LINE L2 3193 3302 -11 1469 127 9 5 chr1 27592450 27592663 -215071690 + AluJb SINE Alu 87 300 -12 450 315 24 0 chr1 27592729 27592894 -215071459 + L2 LINE L2 2884 3052 -220 220 278 56 19 chr1 27592960 27593068 -215071285 - L2 LINE L2 -499 2815 2704 1487 91 11 0 chr1 27593243 27593430 -215070923 - AluSg/x SINE Alu -10 302 114 2218 71 0 8 chr1 27593531 27593798 -215070555 - AluSq SINE Alu -48 265 1 1976 155 3 3 chr1 27593896 27594186 -215070167 - AluJb SINE Alu -22 290 1 394 215 97 0 chr1 27594196 27594289 -215070064 - L1ME2 LINE L1 0 6164 6063 290 259 44 30 chr1 27594326 27594461 -215069892 - L1MC5 LINE L1 -515 7446 7310 2195 152 0 0 chr1 27594500 27594810 -215069543 + AluSx SINE Alu 1 310 -2 31 0 0 0 chr1 27594888 27594919 -215069434 + AT_rich Low_complexity Low_complexity 1 31 0 2386 91 0 0 chr1 27594919 27595217 -215069136 - AluY SINE Alu -13 298 1 337 250 164 23 chr1 27595618 27595746 -215068607 + L3 LINE CR1 1360 1505 -72 2453 217 134 31 chr1 27595990 27596196 -215068157 - L1ME3A LINE L1 -8 6162 5979 2122 94 0 4 chr1 27596196 27596508 -215067845 - AluSq SINE Alu 0 330 20 2453 217 134 31 chr1 27596508 27596945 -215067408 - L1ME3A LINE L1 -191 5979 5420 2505 81 0 10 chr1 27596945 27597254 -215067099 - AluSx SINE Alu -6 306 1 2453 217 134 31 chr1 27597254 27597392 -215066961 - L1ME3A LINE L1 -750 5420 5298 181 250 42 0 chr1 27597643 27597691 -215066662 - MIR SINE MIR -23 239 190 1901 134 7 39 chr1 27597691 27597996 -215066357 - AluJb SINE Alu -17 295 1 2316 119 0 0 chr1 27598038 27598348 -215066005 - AluSg SINE Alu 0 310 1 559 285 35 25 chr1 27598432 27598632 -215065721 - MIR SINE MIR -26 236 35 258 274 197 0 chr1 27598791 27598908 -215065445 + MER102b DNA MER1_type 173 312 -29 192 156 0 0 chr1 27598980 27599012 -215065341 - MER5A DNA MER1_type -23 166 135 2308 107 0 13 chr1 27599136 27599446 -215064907 + AluSq SINE Alu 1 306 -7 293 270 40 60 chr1 27599503 27599583 -215064770 + MIR SINE MIR 20 97 -111 1732 154 95 0 chr1 27599583 27599856 -215064497 + AluSx SINE Alu 1 299 -13 293 270 40 60 chr1 27599856 27599906 -215064447 + MIR SINE MIR 97 146 -62 289 222 100 67 chr1 27600383 27600473 -215063880 - L2 LINE L2 -1 3271 3179 401 270 110 10 chr1 27600645 27600845 -215063508 - L2 LINE L2 -891 2423 2204 1741 157 18 14 chr1 27600870 27601170 -215063183 + AluJo SINE Alu 1 301 0 249 256 51 13 chr1 27601212 27601290 -215063063 - MIR3 SINE MIR -51 157 77 674 220 148 0 chr1 27601297 27601479 -215062874 - L2 LINE L2 0 3313 3105 2390 89 0 0 chr1 27601508 27601800 -215062553 + AluSx SINE Alu 1 292 -20 494 246 84 0 chr1 27601800 27601942 -215062411 - L2 LINE L2 -855 2459 2306 184 240 66 153 chr1 27603212 27603395 -215060958 - L2 LINE L2 -89 3183 3017 445 259 41 14 chr1 27603473 27603620 -215060733 - MIR SINE MIR -80 182 32 2387 111 0 0 chr1 27604326 27604633 -215059720 + AluSg SINE Alu 1 307 -3 454 209 86 29 chr1 27605885 27606024 -215058329 - MIR SINE MIR -2 260 114 1219 276 144 38 chr1 27606037 27606573 -215057780 - L2 LINE L2 -3 3310 2832 2000 111 35 14 chr1 27606573 27606861 -215057492 + AluSx SINE Alu 1 294 -18 1219 276 144 38 chr1 27606861 27607209 -215057144 - L2 LINE L2 -481 2832 2310 1135 65 0 14 chr1 27607209 27607347 -215057006 + AluSp SINE Alu 1 136 -177 2460 90 0 0 chr1 27607348 27607658 -215056695 + AluY SINE Alu 2 311 0 466 242 16 0 chr1 27607659 27607783 -215056570 - L2 LINE L2 -997 2317 2192 587 244 144 0 chr1 27607785 27607945 -215056408 + MER5A DNA MER1_type 7 189 0 370 307 95 58 chr1 27608846 27609120 -215055233 + L2 LINE L2 2989 3272 0 391 281 26 9 chr1 27609334 27609448 -215054905 + MIR SINE MIR 101 216 -46 725 150 0 64 chr1 27609607 27609747 -215054606 + FLAM_C SINE Alu 1 131 -2 364 101 14 0 chr1 27609748 27609814 -215054539 + LTR23 LTR ERV1 314 388 -57 711 176 171 27 chr1 27609913 27610100 -215054253 - AluJo SINE Alu -16 296 83 379 301 166 5 chr1 27610208 27610401 -215053952 - MIR SINE MIR -33 229 6 445 245 45 60 chr1 27611074 27611107 -215053246 - MIR SINE MIR -65 143 111 2431 99 0 0 chr1 27611107 27611410 -215052943 - AluSg SINE Alu -7 303 1 445 245 45 60 chr1 27611410 27611557 -215052796 - MIR SINE MIR -97 111 5 484 271 206 0 chr1 27611585 27611784 -215052569 - L3 LINE CR1 -4 1573 1334 316 284 29 20 chr1 27612057 27612159 -215052194 + MIR SINE MIR 13 115 -147 2022 134 3 38 chr1 27612210 27612523 -215051830 + AluSx SINE Alu 1 302 -10 2206 102 11 0 chr1 27612524 27612831 -215051522 + AluSq SINE Alu 1 310 0 269 217 84 12 chr1 27612989 27613072 -215051281 + MIR SINE MIR 47 135 -127 1634 174 0 75 chr1 27613077 27613398 -215050955 - AluJb SINE Alu -15 297 1 319 254 37 90 chr1 27613822 27613956 -215050397 + MIR3 SINE MIR 36 162 -46 1821 142 0 57 chr1 27614315 27614646 -215049707 + AluJb SINE Alu 1 312 0 241 242 33 66 chr1 27614716 27614807 -215049546 - MIR SINE MIR -83 125 38 2140 111 40 0 chr1 27615151 27615449 -215048904 + AluSp SINE Alu 1 310 -3 2987 214 48 35 chr1 27615449 27616002 -215048351 - L1ME2 LINE L1 -3 6161 5617 1829 148 28 3 chr1 27616002 27616293 -215048060 + AluJb SINE Alu 1 298 -14 2987 214 48 35 chr1 27616293 27616399 -215047954 - L1ME2 LINE L1 -547 5617 5514 2158 108 3 10 chr1 27616399 27616696 -215047657 - AluSq SINE Alu -13 300 6 2364 106 0 0 chr1 27616701 27616994 -215047359 - AluSg SINE Alu -17 293 1 2987 214 48 35 chr1 27616994 27617158 -215047195 - L1ME2 LINE L1 -653 5511 5320 2156 97 3 21 chr1 27617173 27617487 -215046866 + AluSq SINE Alu 1 309 0 2156 137 0 28 chr1 27617497 27617818 -215046535 + AluSx SINE Alu 1 312 0 1644 189 43 23 chr1 27617830 27618131 -215046222 + AluJb SINE Alu 1 307 -5 423 241 27 18 chr1 27618141 27618253 -215046100 - MIR SINE MIR -149 113 1 2508 79 3 0 chr1 27618291 27618595 -215045758 - AluY SINE Alu -6 305 1 2120 211 112 27 chr1 27618632 27618893 -215045460 - L1ME2 LINE L1 -1550 4596 4359 2087 124 34 3 chr1 27618893 27619184 -215045169 - AluSx SINE Alu -12 300 1 2120 211 112 27 chr1 27619184 27619243 -215045110 - L1ME2 LINE L1 -1787 4359 4306 2244 98 7 23 chr1 27619243 27619548 -215044805 - AluSx SINE Alu -12 300 1 2120 211 112 27 chr1 27619548 27619957 -215044396 - L1ME2 LINE L1 -1840 4306 3804 1007 213 0 0 chr1 27619971 27620145 -215044208 - AluJb SINE Alu -1 311 138 2181 116 3 0 chr1 27620156 27620457 -215043896 - AluSx SINE Alu -4 308 7 1870 191 0 0 chr1 27620490 27620799 -215043554 + AluJb SINE Alu 1 309 -3 2202 136 0 0 chr1 27620811 27621112 -215043241 + AluSx SINE Alu 1 301 -11 321 311 30 7 chr1 27621274 27621409 -215042944 - MIR SINE MIR -23 239 102 471 282 126 11 chr1 27621452 27621640 -215042713 - MIR SINE MIR -3 259 53 2497 74 0 0 chr1 27621913 27622211 -215042142 + AluY SINE Alu 5 302 -9 2485 68 7 0 chr1 27622286 27622580 -215041773 + AluSg SINE Alu 2 297 -13 310 289 11 22 chr1 27622635 27622725 -215041628 + MIR SINE MIR 26 114 -148 337 129 29 0 chr1 27622725 27622795 -215041558 + CT-rich Low_complexity Low_complexity 3 74 0 2267 112 0 0 chr1 27622797 27623092 -215041261 - AluSg SINE Alu -15 295 1 899 213 119 67 chr1 27623092 27623495 -215040858 - L1M4 LINE L1 -1012 5134 4711 310 127 14 99 chr1 27623499 27623570 -215040783 - FLAM_A SINE Alu -1 132 68 658 185 134 13 chr1 27623643 27623800 -215040553 - MIR SINE MIR -56 206 31 428 159 0 0 chr1 27623817 27623880 -215040473 - AluJ/FLAM SINE Alu -246 66 4 2261 130 3 15 chr1 27623890 27624214 -215040139 - 7SLRNA srpRNA srpRNA 0 320 1 2143 134 3 3 chr1 27624276 27624582 -215039771 - AluSx SINE Alu -6 306 1 186 43 0 0 chr1 27624583 27624606 -215039747 + (T)n Simple_repeat Simple_repeat 1 23 0 805 40 0 0 chr1 27624609 27624708 -215039645 - HY3 scRNA scRNA -1 100 2 335 289 101 46 chr1 27624712 27624930 -215039423 - L1ME LINE L1 -511 5655 5426 * 680 197 92 0 chr1 27624927 27625079 -215039274 - L1MA10 LINE L1 0 6334 6169 189 94 0 0 chr1 27625081 27625113 -215039240 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2439 70 0 3 chr1 27625114 27625399 -215038954 - AluSp SINE Alu -29 284 1 2029 157 3 0 chr1 27625409 27625715 -215038638 - AluSx SINE Alu -3 309 3 653 229 117 11 chr1 27625851 27626030 -215038323 + MIR SINE MIR 5 202 -60 227 152 0 0 chr1 27626052 27626085 -215038268 + C-rich Low_complexity Low_complexity 129 161 0 6212 57 22 51 chr1 27626086 27626112 -215038241 + SVA Other Other 1 866 -618 6212 55 21 55 chr1 27626112 27627008 -215037345 + SVA Other Other 1 866 -520 6882 61 5 28 chr1 27627112 27628184 -215036169 + SVA Other Other 534 1386 0 292 262 189 43 chr1 27628683 27628847 -215035506 - MIR SINE MIR 0 262 75 1722 173 20 14 chr1 27629116 27629411 -215034942 - AluJb SINE Alu -15 297 1 238 286 117 99 chr1 27629460 27629673 -215034680 - LTR16A1 LTR ERVL -62 395 179 288 272 181 69 chr1 27629866 27630026 -215034327 + MIR SINE MIR 40 216 -46 1754 171 0 0 chr1 27630039 27630326 -215034027 + AluJb SINE Alu 1 287 -25 590 309 34 90 chr1 27630394 27630773 -215033580 - L2 LINE L2 -4 3268 2911 322 292 72 82 chr1 27630801 27630859 -215033494 - L2 LINE L2 -508 2806 2749 1570 94 197 4 chr1 27630859 27631113 -215033240 + AluSq SINE Alu 1 303 0 322 292 72 82 chr1 27631113 27631249 -215033104 - L2 LINE L2 -565 2749 2614 1906 120 43 7 chr1 27631435 27631736 -215032617 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 27631759 27631782 -215032571 + AT_rich Low_complexity Low_complexity 1 23 0 2176 86 19 26 chr1 27631785 27632098 -215032255 + AluSx SINE Alu 1 311 -1 1816 137 30 20 chr1 27632103 27632402 -215031951 + AluJb SINE Alu 3 304 -8 979 155 7 0 chr1 27632402 27632557 -215031796 + AluJo/FRAM SINE Alu 134 289 -23 2070 92 0 83 chr1 27632576 27632914 -215031439 + AluSx SINE Alu 1 310 -2 257 133 67 83 chr1 27633007 27633067 -215031286 + U7 snRNA snRNA 2 60 -3 * 298 167 19 0 chr1 27633045 27633099 -215031254 - U7 snRNA snRNA -7 56 2 1687 208 61 113 chr1 27636141 27636379 -215027974 - L2 LINE L2 0 3313 3064 2235 87 0 3 chr1 27636379 27636679 -215027674 - AluSc SINE Alu -10 299 1 1687 208 61 113 chr1 27636679 27636970 -215027383 - L2 LINE L2 -249 3064 2759 186 43 0 0 chr1 27636970 27636993 -215027360 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2006 110 0 17 chr1 27636993 27637278 -215027075 - AluSx SINE Alu -32 280 1 1687 208 61 113 chr1 27637278 27637388 -215026965 - L2 LINE L2 -553 2760 2646 1587 171 4 4 chr1 27637388 27637652 -215026701 - AluJo SINE Alu -48 264 1 1687 208 61 113 chr1 27637652 27637959 -215026394 - L2 LINE L2 -667 2646 2435 461 326 0 21 chr1 27637959 27638100 -215026253 + MIR SINE MIR 3 140 -122 322 292 30 77 chr1 27638089 27638257 -215026096 + L2 LINE L2 2680 2839 -475 * 180 77 0 0 chr1 27638318 27638344 -215026009 + (TCCCC)n Simple_repeat Simple_repeat 4 29 0 1416 164 27 79 chr1 27638354 27638564 -215025789 - AluJb SINE Alu 0 312 93 1873 138 7 3 chr1 27638564 27638868 -215025485 + AluSx SINE Alu 1 305 -7 234 0 0 0 chr1 27638868 27638894 -215025459 + (TA)n Simple_repeat Simple_repeat 2 27 0 1416 164 27 79 chr1 27638894 27639011 -215025342 - AluJb SINE Alu -217 95 1 2128 119 0 0 chr1 27639032 27639334 -215025019 - AluSq SINE Alu -11 302 1 2084 97 23 0 chr1 27639362 27639661 -215024692 + AluSx SINE Alu 1 306 -6 688 267 197 29 chr1 27639661 27639976 -215024377 + L2 LINE L2 2937 3304 -9 1633 147 0 23 chr1 27640039 27640305 -215024048 - AluJb SINE Alu -52 260 1 216 0 0 0 chr1 27640310 27640334 -215024019 + (T)n Simple_repeat Simple_repeat 1 24 0 1748 156 7 7 chr1 27640357 27640652 -215023701 + AluSx SINE Alu 1 295 -17 1026 75 0 0 chr1 27640666 27640799 -215023554 - AluSq/x SINE Alu -179 133 1 863 238 119 55 chr1 27640972 27641300 -215023053 + L2 LINE L2 2961 3309 -4 260 358 62 19 chr1 27642175 27642337 -215022016 + MER5A DNA MER1_type 1 169 -20 2259 104 0 3 chr1 27642905 27643214 -215021139 + AluSx SINE Alu 1 308 -4 1966 107 0 57 chr1 27643226 27643543 -215020810 + AluSx SINE Alu 1 299 -13 668 188 0 0 chr1 27643936 27644048 -215020305 + FLAM_C SINE Alu 2 113 -30 1145 140 105 143 chr1 27644093 27644215 -215020138 + AluJb SINE Alu 1 126 -206 2295 53 11 0 chr1 27644215 27644496 -215019857 - AluSp SINE Alu -25 288 5 1145 140 105 143 chr1 27644496 27644717 -215019636 + AluJb SINE Alu 126 332 0 599 214 117 41 chr1 27645410 27645606 -215018747 - MIR SINE MIR -29 233 23 753 106 0 35 chr1 27646060 27646173 -215018180 - AluSg/x SINE Alu -17 292 184 2343 86 0 0 chr1 27646199 27646501 -215017852 - AluSg SINE Alu -8 302 1 1589 130 108 11 chr1 27646558 27646827 -215017526 - AluSq SINE Alu -18 295 1 257 214 29 14 chr1 27647079 27647149 -215017204 - MIR SINE MIR -80 182 112 648 282 248 21 chr1 27647185 27647604 -215016749 - L3 LINE CR1 -98 1479 966 1940 136 7 0 chr1 27647953 27648247 -215016106 - AluSx SINE Alu -16 296 1 410 262 40 47 chr1 27648539 27648688 -215015665 + MIR SINE MIR 41 188 -74 2190 90 7 0 chr1 27648704 27648993 -215015360 - AluSx SINE Alu -21 291 1 1425 153 4 4 chr1 27648996 27649231 -215015122 - AluJb SINE Alu -18 294 60 215 146 0 83 chr1 27649236 27649284 -215015069 + MIR SINE MIR 190 233 -29 230 235 29 15 chr1 27651144 27651212 -215013141 + C-rich Low_complexity Low_complexity 1 69 0 217 231 96 0 chr1 27652276 27652328 -215012025 - MIR3 SINE MIR -37 171 115 2337 50 0 0 chr1 27652807 27653121 -215011232 + AluY SINE Alu 1 314 0 27 0 0 0 chr1 27653153 27653180 -215011173 + AT_rich Low_complexity Low_complexity 1 27 0 2019 91 18 7 chr1 27653270 27653556 -215010797 - AluSx SINE Alu -23 289 1 2363 43 7 0 chr1 27653644 27653944 -215010409 - AluY SINE Alu -9 302 1 379 203 0 0 chr1 27654142 27654216 -215010137 - AluJo SINE Alu 0 302 229 811 155 0 52 chr1 27654216 27654371 -215009982 - AluJo SINE Alu -165 147 1 704 199 77 13 chr1 27654636 27654792 -215009561 - AluJo/FRAM SINE Alu 0 302 137 1239 99 0 0 chr1 27654795 27654966 -215009387 - AluSp SINE Alu -5 308 138 1430 80 5 0 chr1 27654966 27655154 -215009199 - AluSp SINE Alu -124 189 1 1986 111 3 7 chr1 27655156 27655454 -215008899 - AluY SINE Alu -13 298 2 1502 158 10 45 chr1 27655502 27655793 -215008560 + AluJo SINE Alu 1 281 -31 2156 78 3 68 chr1 27655813 27656134 -215008219 + AluSp SINE Alu 1 300 -13 2179 103 0 13 chr1 27656142 27656453 -215007900 + AluSg SINE Alu 3 309 -1 2200 207 123 6 chr1 27657091 27657636 -215006717 + L1MC4 LINE L1 7069 7677 -365 1382 177 26 15 chr1 27657666 27657932 -215006421 + AluJo SINE Alu 14 282 -30 942 209 60 60 chr1 27657945 27658062 -215006291 + L1MC4 LINE L1 7699 7815 -227 2567 42 0 3 chr1 27658062 27658374 -215005979 - AluY SINE Alu 0 311 1 942 209 60 60 chr1 27658374 27658587 -215005766 + L1MC4 LINE L1 7814 8029 -13 537 284 57 0 chr1 27658595 27658736 -215005617 - MIR3 SINE MIR -43 165 17 2177 117 0 0 chr1 27659123 27659431 -215004922 + AluSx SINE Alu 1 308 -4 2370 80 5 80 chr1 27659546 27659932 -215004421 - L1PA14 LINE L1 -1 6160 5804 415 111 111 0 chr1 27660123 27660195 -215004158 - MER116 DNA Mariner 0 80 1 2356 88 0 0 chr1 27660439 27660747 -215003606 - AluSg SINE Alu -2 308 1 216 0 0 0 chr1 27660779 27660803 -215003550 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 608 215 0 0 chr1 27660803 27660910 -215003443 - FRAM SINE Alu -32 144 38 326 50 0 0 chr1 27660910 27660950 -215003403 + MER41B-int LTR ERV1 241 280 -5666 899 105 8 30 chr1 27660950 27661083 -215003270 + FLAM_C SINE Alu 1 130 -13 10654 102 22 41 chr1 27661083 27661761 -215002592 + MER41B-int LTR ERV1 283 972 -4974 1991 114 0 0 chr1 27661761 27662065 -215002288 - AluSg SINE Alu 0 305 2 10654 102 22 41 chr1 27662065 27662174 -215002179 + MER41B-int LTR ERV1 972 1082 -4864 1473 119 70 0 chr1 27662174 27662401 -215001952 + AluSg/x SINE Alu 66 308 -4 10654 102 22 41 chr1 27662401 27663351 -215001002 + MER41B-int LTR ERV1 1082 1775 -4171 5394 94 5 87 chr1 27663350 27663487 -215000866 + MER41B-int LTR ERV1 4945 5092 -2664 * 2352 77 7 0 chr1 27663487 27663787 -215000566 + AluSx SINE Alu 1 302 -10 5394 94 5 87 chr1 27663787 27663928 -215000425 + MER41B-int LTR ERV1 5092 5243 -2513 2432 63 0 0 chr1 27663928 27664230 -215000123 + AluY SINE Alu 1 302 -9 2032 129 0 0 chr1 27664238 27664532 -214999821 + AluSx SINE Alu 1 294 -18 5394 94 5 87 chr1 27664532 27664754 -214999599 + MER41B-int LTR ERV1 5250 5489 -2267 2206 102 0 7 chr1 27664754 27665057 -214999296 + AluSp SINE Alu 2 302 -11 5394 94 5 87 chr1 27665057 27665266 -214999087 + MER41B-int LTR ERV1 5489 5714 -2042 2197 109 0 3 chr1 27665266 27665577 -214998776 - AluSg SINE Alu 0 310 1 2176 71 0 0 chr1 27665582 27665901 -214998452 - AluY SINE Alu 0 319 1 5394 94 5 87 chr1 27665901 27666569 -214997784 + MER41B-int LTR ERV1 5718 7756 0 1417 111 19 0 chr1 27666569 27666777 -214997576 + MER41B LTR ERV1 1 212 -423 884 129 0 0 chr1 27666778 27666902 -214997451 + AluJ SINE Alu 1 124 -188 498 64 96 0 chr1 27666905 27667061 -214997292 + (TA)n Simple_repeat Simple_repeat 1 171 0 816 192 53 0 chr1 27667061 27667212 -214997141 + AluJ SINE Alu 133 291 -21 2816 126 2 26 chr1 27667213 27667543 -214996810 + MER41B LTR ERV1 195 513 -122 2118 72 41 0 chr1 27667543 27667835 -214996518 - AluY SINE Alu -7 304 1 2816 126 2 26 chr1 27667835 27667956 -214996397 + MER41B LTR ERV1 513 635 0 2027 120 0 0 chr1 27668016 27668340 -214996013 - AluSx SINE Alu 0 324 1 2180 86 0 3 chr1 27668501 27668791 -214995562 - AluY SINE Alu -10 301 13 2183 109 0 0 chr1 27668833 27669127 -214995226 - AluSg SINE Alu -16 294 1 1712 116 45 68 chr1 27669190 27669500 -214994853 - AluSx SINE Alu -7 305 3 1370 148 31 113 chr1 27669607 27669925 -214994428 + AluJb SINE Alu 4 295 -17 499 319 143 43 chr1 27669953 27670122 -214994231 - MLT1L LTR MaLR -17 598 447 315 0 0 0 chr1 27670122 27670157 -214994196 + (TG)n Simple_repeat Simple_repeat 2 36 0 2078 102 0 0 chr1 27670157 27670440 -214993913 - AluSg SINE Alu -26 284 2 499 319 143 43 chr1 27670440 27670801 -214993552 - MLT1L LTR MaLR -167 448 14 281 161 0 0 chr1 27670884 27670936 -214993417 + L1MB7 LINE L1 5663 5714 -464 1716 175 129 5 chr1 27671306 27671678 -214992675 + L1MB7 LINE L1 5706 6123 -61 1924 145 3 0 chr1 27671678 27671981 -214992372 - AluSx SINE Alu -8 304 1 2167 104 0 10 chr1 27671984 27672291 -214992062 - AluSp SINE Alu -9 304 1 2318 82 0 0 chr1 27672624 27672927 -214991426 - AluSg SINE Alu -7 303 1 625 164 0 0 chr1 27672944 27673048 -214991305 - U13 snRNA snRNA 0 104 1 1450 142 58 84 chr1 27673133 27673262 -214991091 + AluJb SINE Alu 1 132 -180 1995 112 0 0 chr1 27673262 27673538 -214990815 + AluSx SINE Alu 25 300 -12 1450 142 58 84 chr1 27673538 27673717 -214990636 + AluJb SINE Alu 132 301 -11 2134 88 24 14 chr1 27673839 27673975 -214990378 + AluSx SINE Alu 1 134 -178 2118 71 29 32 chr1 27673975 27674283 -214990070 + AluSq SINE Alu 1 307 -6 2134 88 24 14 chr1 27674283 27674441 -214989912 + AluSx SINE Alu 134 298 -14 1361 167 0 0 chr1 27674447 27674663 -214989690 + AluJo SINE Alu 86 301 -11 2042 123 0 10 chr1 27674771 27675072 -214989281 - AluSx SINE Alu -14 298 1 2393 46 3 16 chr1 27675308 27675612 -214988741 - AluY SINE Alu -11 300 1 1693 143 59 0 chr1 27676799 27677072 -214987281 + AluSx SINE Alu 1 289 -23 2284 89 0 10 chr1 27677080 27677393 -214986960 + AluSp SINE Alu 1 310 -3 1875 155 3 0 chr1 27677396 27677699 -214986654 + AluSx SINE Alu 1 304 -8 1716 175 129 5 chr1 27677699 27678071 -214986282 - L1MB7 LINE L1 -61 6123 5706 254 159 0 0 chr1 27678441 27678493 -214985860 - L1MB7 LINE L1 -460 5714 5663 382 319 112 21 chr1 27678576 27678817 -214985536 + MLT1L LTR MaLR 14 276 -339 2007 107 4 0 chr1 27678937 27679217 -214985136 + AluSx SINE Alu 2 282 -30 495 0 0 0 chr1 27679219 27679274 -214985079 + (CA)n Simple_repeat Simple_repeat 2 56 0 246 273 141 16 chr1 27679296 27679417 -214984936 + MLT1L LTR MaLR 431 566 -49 2359 41 7 3 chr1 27679420 27679715 -214984638 + AluY SINE Alu 1 296 -15 1337 139 147 45 chr1 27679784 27680050 -214984303 - AluJb SINE Alu -16 296 4 1830 117 57 7 chr1 27680157 27680439 -214983914 + AluSx SINE Alu 3 298 -14 2195 102 0 0 chr1 27680502 27680797 -214983556 + AluSg SINE Alu 1 295 -15 608 194 8 22 chr1 27680815 27680949 -214983404 + MER103 DNA DNA 32 163 -3 1793 142 0 4 chr1 27681073 27681348 -214983005 + AluSg SINE Alu 5 278 -32 183 42 0 0 chr1 27681348 27681372 -214982981 + (TAA)n Simple_repeat Simple_repeat 1 24 0 264 274 0 29 chr1 27681386 27681414 -214982939 + GA-rich Low_complexity Low_complexity 1 28 -71 2065 120 3 0 chr1 27681414 27681723 -214982630 + AluSx SINE Alu 1 310 -2 264 274 0 29 chr1 27681723 27681796 -214982557 + GA-rich Low_complexity Low_complexity 28 99 0 189 0 0 0 chr1 27681965 27681986 -214982367 + (TTTAA)n Simple_repeat Simple_repeat 4 24 0 2099 112 0 0 chr1 27681987 27682282 -214982071 - AluSx SINE Alu -17 295 1 189 234 43 0 chr1 27682390 27682437 -214981916 - MIR3 SINE MIR -3 205 157 369 0 0 0 chr1 27682630 27682671 -214981682 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1954 120 0 0 chr1 27682681 27682955 -214981398 - AluSx SINE Alu -38 274 1 214 391 20 20 chr1 27682960 27683111 -214981242 - L2 LINE L2 -228 3044 2894 355 81 0 32 chr1 27683867 27683929 -214980424 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1835 137 38 7 chr1 27683929 27684221 -214980132 - AluSx SINE Alu -11 301 1 472 288 100 75 chr1 27684248 27684515 -214979838 + L1MEc LINE L1 1053 1312 -5322 2225 97 0 3 chr1 27684515 27684815 -214979538 + AluSq SINE Alu 1 299 -14 472 288 100 75 chr1 27684815 27684985 -214979368 + L1MEc LINE L1 1312 1607 -5027 864 127 0 8 chr1 27685074 27685200 -214979153 + AluJo/FLAM SINE Alu 2 126 -176 429 153 42 0 chr1 27685200 27685272 -214979081 + AluJ/FRAM SINE Alu 225 299 -13 496 271 72 18 chr1 27685357 27685523 -214978830 - L1ME LINE L1 -459 5662 5488 4335 153 38 72 chr1 27685572 27685678 -214978675 + L1MB4 LINE L1 4779 4887 -1293 1576 150 97 4 chr1 27685678 27685945 -214978408 + AluJb SINE Alu 1 292 -20 4335 153 38 72 chr1 27685945 27686206 -214978147 + L1MB4 LINE L1 4887 5155 -1025 1293 165 122 54 chr1 27686206 27686485 -214977868 + AluJo SINE Alu 5 302 0 4335 153 38 72 chr1 27686485 27686680 -214977673 + L1MB4 LINE L1 5155 5355 -825 2320 84 3 3 chr1 27686680 27686990 -214977363 + AluSx SINE Alu 1 310 -2 4335 153 38 72 chr1 27686990 27687275 -214977078 + L1MB4 LINE L1 5355 5648 -532 611 90 0 0 chr1 27687275 27687353 -214977000 - MADE1 DNA Mariner -2 78 1 4335 153 38 72 chr1 27687353 27687457 -214976896 + L1MB4 LINE L1 5648 5754 -426 1991 134 3 19 chr1 27687457 27687771 -214976582 - AluSx SINE Alu -3 309 1 4335 153 38 72 chr1 27687771 27687912 -214976441 + L1MB4 LINE L1 5754 5898 -282 2021 120 0 13 chr1 27687912 27688048 -214976305 + AluSx SINE Alu 1 137 -175 1979 118 52 0 chr1 27688048 27688336 -214976017 + AluSx SINE Alu 1 303 -9 2021 120 0 13 chr1 27688336 27688498 -214975855 + AluSx SINE Alu 137 295 -17 1885 131 3 38 chr1 27688503 27688816 -214975537 + AluSx SINE Alu 11 312 0 4335 153 38 72 chr1 27688816 27689009 -214975344 + L1MB4 LINE L1 5902 6025 -155 1664 185 0 35 chr1 27689009 27689323 -214975030 - AluJb SINE Alu -9 303 1 4335 153 38 72 chr1 27689323 27689435 -214974918 + L1MB4 LINE L1 6025 6139 -41 2180 97 0 7 chr1 27689437 27689737 -214974616 + AluSq SINE Alu 1 298 -15 834 78 0 0 chr1 27689747 27689862 -214974491 + AluSc SINE Alu 174 288 -21 1950 120 7 7 chr1 27689902 27690202 -214974151 - AluSx SINE Alu -12 300 1 2089 115 0 0 chr1 27690203 27690499 -214973854 - AluSx SINE Alu -16 296 1 374 159 0 0 chr1 27690499 27690562 -214973791 - Alu SINE Alu -6 296 234 1650 143 0 0 chr1 27690662 27690914 -214973439 + AluSx SINE Alu 59 310 -2 35 0 0 0 chr1 27690992 27691027 -214973326 + AT_rich Low_complexity Low_complexity 1 35 0 2226 83 0 0 chr1 27691031 27691321 -214973032 - AluY SINE Alu -21 290 1 362 250 164 23 chr1 27691722 27691850 -214972503 + L3 LINE CR1 1360 1505 -72 2579 209 135 32 chr1 27692094 27692300 -214972053 - L1ME3A LINE L1 -8 6162 5979 1979 94 0 4 chr1 27692300 27692612 -214971741 - AluSq SINE Alu 0 330 20 2579 209 135 32 chr1 27692612 27693049 -214971304 - L1ME3A LINE L1 -191 5979 5420 2321 84 0 10 chr1 27693049 27693358 -214970995 - AluSx SINE Alu -6 306 1 2579 209 135 32 chr1 27693358 27693496 -214970857 - L1ME3A LINE L1 -750 5420 5298 188 250 42 0 chr1 27693747 27693795 -214970558 - MIR SINE MIR -23 239 190 1746 134 7 39 chr1 27693795 27694100 -214970253 - AluJb SINE Alu -17 295 1 2148 119 0 0 chr1 27694142 27694452 -214969901 - AluSg SINE Alu 0 310 1 593 285 35 25 chr1 27694536 27694736 -214969617 - MIR SINE MIR -26 236 35 263 274 197 0 chr1 27694895 27695012 -214969341 + MER102a DNA MER1_type 162 301 -29 201 156 0 0 chr1 27695084 27695116 -214969237 - MER5A DNA MER1_type -23 166 135 1955 118 0 22 chr1 27695240 27695553 -214968800 + AluSq SINE Alu 1 306 -7 316 270 40 60 chr1 27695610 27695690 -214968663 + MIR SINE MIR 20 97 -111 1592 154 95 0 chr1 27695690 27695963 -214968390 + AluSx SINE Alu 1 299 -13 316 270 40 60 chr1 27695963 27696013 -214968340 + MIR SINE MIR 97 146 -62 311 222 100 67 chr1 27696490 27696580 -214967773 - L2 LINE L2 -1 3271 3179 428 255 115 15 chr1 27696752 27696952 -214967401 - L2 LINE L2 -891 2423 2204 1594 157 18 14 chr1 27696977 27697277 -214967076 + AluJo SINE Alu 1 301 0 259 256 51 13 chr1 27697319 27697397 -214966956 - MIR3 SINE MIR -51 157 77 722 214 148 0 chr1 27697404 27697586 -214966767 - L2 LINE L2 0 3313 3105 2235 89 0 0 chr1 27697615 27697907 -214966446 + AluSx SINE Alu 1 292 -20 534 219 103 13 chr1 27697907 27698062 -214966291 - L2 LINE L2 -855 2459 2291 207 235 66 153 chr1 27699319 27699502 -214964851 - L2 LINE L2 -89 3183 3017 469 259 41 14 chr1 27699580 27699727 -214964626 - MIR SINE MIR -80 182 32 2224 111 0 0 chr1 27700433 27700740 -214963613 + AluSg SINE Alu 1 307 -3 483 209 86 29 chr1 27701992 27702131 -214962222 - MIR SINE MIR -2 260 114 1325 273 145 39 chr1 27702157 27702680 -214961673 - L2 LINE L2 -16 3297 2831 1848 111 35 14 chr1 27702680 27702968 -214961385 + AluSx SINE Alu 1 294 -18 1325 273 145 39 chr1 27702968 27703316 -214961037 - L2 LINE L2 -482 2831 2310 1059 63 0 0 chr1 27703316 27703443 -214960910 + AluSp SINE Alu 1 127 -186 2298 90 0 0 chr1 27703455 27703765 -214960588 + AluY SINE Alu 2 311 0 497 242 16 0 chr1 27703766 27703890 -214960463 - L2 LINE L2 -997 2317 2192 626 244 144 0 chr1 27703892 27704052 -214960301 + MER5A DNA MER1_type 7 189 0 1672 148 0 39 chr1 27704505 27704810 -214959543 + AluJb SINE Alu 1 293 -19 265 242 33 66 chr1 27704906 27704997 -214959356 - MIR SINE MIR -83 125 38 237 159 0 0 chr1 27705303 27705341 -214959012 - L1ME3 LINE L1 -7 6155 6117 1988 103 41 0 chr1 27705341 27705631 -214958722 + AluSp SINE Alu 1 302 -11 24 0 0 0 chr1 27705636 27705660 -214958693 + AT_rich Low_complexity Low_complexity 1 24 0 246 258 0 0 chr1 27705662 27705724 -214958629 - L1ME3 LINE L1 -26 6136 6075 1369 97 0 0 chr1 27705871 27706056 -214958297 + AluSg/x SINE Alu 104 288 -22 912 224 0 0 chr1 27706085 27706250 -214958103 + FRAM SINE Alu 2 166 0 1728 201 48 30 chr1 27706273 27706682 -214957671 + L1M4 LINE L1 3804 4223 -1923 2086 98 7 23 chr1 27706682 27706987 -214957366 + AluSx SINE Alu 1 300 -12 1728 201 48 30 chr1 27706987 27707039 -214957314 + L1M4 LINE L1 4223 4273 -1873 2338 97 0 0 chr1 27707046 27707354 -214956999 + AluSg SINE Alu 1 308 -2 415 111 111 0 chr1 27707598 27707670 -214956683 + MER116 DNA Mariner 1 80 0 2370 80 5 80 chr1 27707861 27708247 -214956106 + L1PA14 LINE L1 5804 6160 -1 2177 117 0 0 chr1 27708362 27708670 -214955683 - AluSx SINE Alu -4 308 1 537 284 57 0 chr1 27709057 27709198 -214955155 + MIR3 SINE MIR 17 165 -43 942 209 60 60 chr1 27709206 27709419 -214954934 - L1MC4 LINE L1 -13 8029 7814 2567 42 0 3 chr1 27709419 27709731 -214954622 + AluY SINE Alu 1 311 0 942 209 60 60 chr1 27709731 27709848 -214954505 - L1MC4 LINE L1 -227 7815 7699 1382 177 26 15 chr1 27709861 27710127 -214954226 - AluJo SINE Alu -30 282 14 2200 207 123 6 chr1 27710157 27710702 -214953651 - L1MC4 LINE L1 -365 7677 7069 2179 103 0 13 chr1 27711340 27711651 -214952702 - AluSg SINE Alu -1 309 3 2156 78 3 68 chr1 27711659 27711980 -214952373 - AluSp SINE Alu -13 300 1 1502 158 10 45 chr1 27712000 27712291 -214952062 - AluJo SINE Alu -31 281 1 1986 111 3 7 chr1 27712339 27712637 -214951716 + AluY SINE Alu 2 298 -13 1430 80 5 0 chr1 27712639 27712827 -214951526 + AluSp SINE Alu 1 189 -124 1239 99 0 0 chr1 27712827 27712998 -214951355 + AluSp SINE Alu 138 308 -5 704 199 77 13 chr1 27713001 27713157 -214951196 + AluJo/FRAM SINE Alu 137 302 0 379 170 0 39 chr1 27713422 27713651 -214950702 + AluJo SINE Alu 1 302 0 2363 43 7 0 chr1 27713849 27714149 -214950204 + AluY SINE Alu 1 302 -9 2182 104 0 0 chr1 27714237 27714534 -214949819 + AluSx SINE Alu 1 297 -15 608 194 8 22 chr1 27714552 27714686 -214949667 + MER103 DNA DNA 32 163 -3 1793 142 0 4 chr1 27714810 27715085 -214949268 + AluSg SINE Alu 5 278 -32 183 42 0 0 chr1 27715085 27715109 -214949244 + (TAA)n Simple_repeat Simple_repeat 1 24 0 264 274 0 29 chr1 27715123 27715151 -214949202 + GA-rich Low_complexity Low_complexity 1 28 -71 2065 120 3 0 chr1 27715151 27715460 -214948893 + AluSx SINE Alu 1 310 -2 264 274 0 29 chr1 27715460 27715533 -214948820 + GA-rich Low_complexity Low_complexity 28 99 0 189 0 0 0 chr1 27715702 27715723 -214948630 + (TTTAA)n Simple_repeat Simple_repeat 4 24 0 2099 112 0 0 chr1 27715724 27716019 -214948334 - AluSx SINE Alu -17 295 1 189 234 43 0 chr1 27716127 27716174 -214948179 - MIR3 SINE MIR -3 205 157 369 0 0 0 chr1 27716367 27716408 -214947945 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1954 120 0 0 chr1 27716418 27716692 -214947661 - AluSx SINE Alu -38 274 1 214 391 20 20 chr1 27716697 27716848 -214947505 - L2 LINE L2 -228 3044 2894 355 81 0 32 chr1 27717604 27717666 -214946687 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1835 137 38 7 chr1 27717666 27717958 -214946395 - AluSx SINE Alu -11 301 1 488 286 100 75 chr1 27717985 27718252 -214946101 + L1MEc LINE L1 1053 1312 -5322 2225 97 0 3 chr1 27718252 27718552 -214945801 + AluSq SINE Alu 1 299 -14 488 286 100 75 chr1 27718552 27718722 -214945631 + L1MEc LINE L1 1312 1607 -5027 864 127 0 8 chr1 27718811 27718937 -214945416 + AluJo/FLAM SINE Alu 2 126 -176 429 153 42 0 chr1 27718937 27719009 -214945344 + AluJ/FRAM SINE Alu 225 299 -13 496 271 72 18 chr1 27719094 27719260 -214945093 - L1ME LINE L1 -459 5662 5488 4313 153 38 73 chr1 27719309 27719415 -214944938 + L1MB4 LINE L1 4779 4887 -1293 1576 150 97 4 chr1 27719415 27719682 -214944671 + AluJb SINE Alu 1 292 -20 4313 153 38 73 chr1 27719682 27719943 -214944410 + L1MB4 LINE L1 4887 5156 -1024 1262 163 123 47 chr1 27719943 27720220 -214944133 + AluJo SINE Alu 5 302 0 4313 153 38 73 chr1 27720220 27720418 -214943935 + L1MB4 LINE L1 5156 5360 -820 2320 84 3 3 chr1 27720418 27720728 -214943625 + AluSx SINE Alu 1 310 -2 4313 153 38 73 chr1 27720728 27721013 -214943340 + L1MB4 LINE L1 5360 5654 -526 611 90 0 0 chr1 27721013 27721091 -214943262 - MADE1 DNA Mariner -2 78 1 4313 153 38 73 chr1 27721091 27721195 -214943158 + L1MB4 LINE L1 5654 5760 -420 1991 134 3 19 chr1 27721195 27721509 -214942844 - AluSx SINE Alu -3 309 1 4313 153 38 73 chr1 27721509 27721650 -214942703 + L1MB4 LINE L1 5760 5905 -275 2021 120 0 13 chr1 27721650 27721786 -214942567 + AluSx SINE Alu 1 137 -175 1971 118 52 0 chr1 27721786 27722073 -214942280 + AluSx SINE Alu 1 302 -10 2021 120 0 13 chr1 27722073 27722235 -214942118 + AluSx SINE Alu 137 295 -17 1885 131 3 38 chr1 27722240 27722553 -214941800 + AluSx SINE Alu 11 312 0 4313 153 38 73 chr1 27722553 27722746 -214941607 + L1MB4 LINE L1 5909 6025 -155 1664 185 0 35 chr1 27722746 27723060 -214941293 - AluJb SINE Alu -9 303 1 4313 153 38 73 chr1 27723060 27723172 -214941181 + L1MB4 LINE L1 6025 6139 -41 2221 90 0 7 chr1 27723174 27723474 -214940879 + AluSq SINE Alu 1 298 -15 789 88 9 0 chr1 27723484 27723598 -214940755 + AluSc SINE Alu 174 288 -21 21 57 0 0 chr1 27923610 27923645 -214740708 + AT_rich Low_complexity Low_complexity 1 35 0 1933 122 20 7 chr1 27923679 27923982 -214740371 + AluSx SINE Alu 6 312 0 338 0 24 0 chr1 27924014 27924056 -214740297 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 526 307 40 0 chr1 27924207 27924383 -214739970 - MIR SINE MIR -71 191 9 2095 122 0 0 chr1 27924414 27924710 -214739643 - AluY SINE Alu -14 297 2 220 297 182 0 chr1 27924913 27925061 -214739292 - L2 LINE L2 -829 2485 2311 2320 94 3 0 chr1 27925373 27925681 -214738672 - AluSx SINE Alu -3 309 1 595 265 213 9 chr1 27925728 27925939 -214738414 + MIR SINE MIR 6 259 -3 1602 157 14 31 chr1 27926139 27926433 -214737920 + AluJo SINE Alu 11 299 -13 606 245 44 13 chr1 27926433 27926592 -214737761 - MIR SINE MIR -79 183 20 2334 90 3 0 chr1 27926634 27926945 -214737408 + AluSp SINE Alu 1 312 -1 314 299 17 26 chr1 27927405 27927522 -214736831 - MIR SINE MIR -55 153 38 394 273 9 18 chr1 27927532 27927642 -214736711 + MIR SINE MIR 34 142 -120 477 0 0 0 chr1 27927708 27927761 -214736592 + (CA)n Simple_repeat Simple_repeat 2 54 0 212 295 89 18 chr1 27928003 27928115 -214736238 + L2 LINE L2 3153 3272 0 421 285 8 16 chr1 27928193 27928316 -214736037 + MIR SINE MIR 19 140 -68 * 673 232 378 0 chr1 27928314 27928506 -214735847 - L2 LINE L2 -264 3049 2931 2055 127 3 0 chr1 27928506 27928805 -214735548 - AluSg SINE Alu -10 300 1 673 232 378 0 chr1 27928805 27929034 -214735319 - L2 LINE L2 -382 2931 2462 501 268 106 11 chr1 27929041 27929410 -214734943 - MLT1H LTR MaLR 0 549 108 200 136 0 45 chr1 27929640 27929684 -214734669 + (GGGTG)n Simple_repeat Simple_repeat 3 44 0 215 295 155 16 chr1 27929718 27929847 -214734506 - L2 LINE L2 -24 3248 3102 250 281 0 0 chr1 27930052 27930116 -214734237 - MIR SINE MIR -112 150 87 2018 118 13 7 chr1 27931434 27931740 -214732613 + AluSx SINE Alu 1 308 -4 1187 113 0 32 chr1 27931742 27931928 -214732425 + AluSg/x SINE Alu 127 306 -6 312 286 20 41 chr1 27932563 27932661 -214731692 - L1MC4 LINE L1 -1339 6703 6608 2121 64 0 0 chr1 27932674 27932938 -214731415 + AluY SINE Alu 4 267 -44 1767 135 10 7 chr1 27933090 27933379 -214730974 - AluSc SINE Alu -14 295 6 2141 116 0 3 chr1 27933385 27933687 -214730666 - AluSx SINE Alu -11 301 1 765 221 159 0 chr1 27933999 27934225 -214730128 + L2 LINE L2 2100 2361 -953 2147 90 13 7 chr1 27934376 27934675 -214729678 - AluSq SINE Alu -12 301 1 246 62 0 0 chr1 27934684 27934716 -214729637 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 2269 88 0 0 chr1 27934724 27935021 -214729332 + AluSx SINE Alu 1 297 -15 271 262 166 28 chr1 27935021 27935157 -214729196 - MER112 DNA MER1_type -90 170 12 2229 121 95 67 chr1 27935312 27935658 -214728695 + LTR47A LTR ERVL 1 364 -88 1931 87 0 4 chr1 27935658 27936007 -214728346 - AluSq SINE Alu 0 379 32 2229 121 95 67 chr1 27936007 27936089 -214728264 + LTR47A LTR ERVL 364 442 -10 231 358 46 0 chr1 27936295 27936404 -214727949 + L2 LINE L2 2898 3011 -302 662 269 35 15 chr1 27936404 27936601 -214727752 - MLT1K LTR MaLR -69 519 319 1446 118 0 0 chr1 27936623 27936827 -214727526 + AluSg1 SINE Alu 1 204 -105 424 300 0 52 chr1 27936852 27936981 -214727372 - MLT1K LTR MaLR -289 299 165 2299 74 24 0 chr1 27936981 27937279 -214727074 + AluSp SINE Alu 1 305 -8 424 300 0 52 chr1 27937279 27937394 -214726959 - MLT1K LTR MaLR -423 165 2 495 307 89 6 chr1 27937461 27937640 -214726713 + L2 LINE L2 3119 3312 -1 875 187 6 16 chr1 27937684 27937866 -214726487 - AluJb SINE Alu -1 311 132 1847 93 108 4 chr1 27937887 27938156 -214726197 + AluSx SINE Alu 1 297 -15 1960 133 14 0 chr1 27938163 27938457 -214725896 + AluSx SINE Alu 1 298 -14 2433 56 0 3 chr1 27938900 27939202 -214725151 - AluY SINE Alu -10 301 1 803 149 8 0 chr1 27939413 27939534 -214724819 - FLAM_C SINE Alu -19 124 3 972 278 141 29 chr1 27939534 27940208 -214724145 + L2 LINE L2 2345 3093 -220 443 233 101 57 chr1 27940220 27940379 -214723974 + MIR SINE MIR 28 193 -69 2210 40 44 0 chr1 27940403 27940743 -214723610 + AluY SINE Alu 1 352 0 814 110 34 0 chr1 27940780 27940898 -214723455 - AluJo SINE Alu -21 291 170 870 186 41 52 chr1 27941001 27941195 -214723158 - AluJo SINE Alu -119 193 2 1037 164 19 0 chr1 27941214 27941373 -214722980 - FRAM SINE Alu -4 162 1 453 256 8 41 chr1 27941446 27941567 -214722786 + L2 LINE L2 3196 3312 -1 2159 80 19 32 chr1 27941675 27941988 -214722365 + AluSx SINE Alu 1 309 -3 1721 162 3 7 chr1 27942922 27943212 -214721141 - AluJb SINE Alu -23 289 1 309 258 226 0 chr1 27943220 27943313 -214721040 - MIR SINE MIR -62 146 33 2111 116 0 19 chr1 27943319 27943629 -214720724 - AluSg SINE Alu -4 306 3 2150 116 7 3 chr1 27943825 27944128 -214720225 - AluSx SINE Alu -6 306 3 1939 146 0 13 chr1 27944141 27944456 -214719897 - AluSx SINE Alu -1 311 1 1893 151 0 3 chr1 27944459 27944758 -214719595 - AluSx SINE Alu -11 301 4 1642 180 17 3 chr1 27944759 27945059 -214719294 - AluJb SINE Alu -8 304 1 771 216 119 16 chr1 27945083 27945277 -214719076 + L1MC4 LINE L1 6766 6979 -1063 1633 164 7 17 chr1 27945330 27945622 -214718731 - AluJo SINE Alu -14 298 10 344 159 43 0 chr1 27945632 27945701 -214718652 + MER69 DNA AcHobo 2453 2524 -2 619 175 58 0 chr1 27945706 27945826 -214718527 - MIR SINE MIR -109 153 27 230 351 147 11 chr1 27945978 27946169 -214718184 - MIR SINE MIR -25 237 21 244 284 136 0 chr1 27946473 27946561 -214717792 + MIR SINE MIR 23 122 -140 180 212 0 0 chr1 27946610 27946643 -214717710 + MIR SINE MIR 218 250 -12 366 224 0 0 chr1 27946648 27946715 -214717638 + L1MC4 LINE L1 6637 6703 -1339 * 380 276 23 0 chr1 27946675 27946762 -214717591 - L1MC4 LINE L1 -1339 6703 6615 2052 128 0 0 chr1 27946762 27947051 -214717302 - AluSx SINE Alu -23 289 1 425 292 124 0 chr1 27948392 27948431 -214715922 - MIR SINE MIR -46 216 183 2130 102 0 13 chr1 27948431 27948735 -214715618 - AluSx SINE Alu -12 300 1 425 292 124 0 chr1 27948735 27948880 -214715473 - MIR SINE MIR -79 183 9 1095 212 68 24 chr1 27949196 27949446 -214714907 - MIR SINE MIR 0 262 2 1640 151 6 63 chr1 27952328 27952461 -214711892 + AluJo SINE Alu 11 150 -162 2210 103 0 0 chr1 27952461 27952761 -214711592 + AluSx SINE Alu 1 300 -12 1537 103 66 4 chr1 27952764 27953006 -214711347 + AluSg1 SINE Alu 53 309 0 1640 151 6 63 chr1 27953006 27953186 -214711167 + AluJo SINE Alu 152 310 -2 2320 88 0 0 chr1 27953543 27953839 -214710514 - AluSq SINE Alu -17 296 1 493 350 111 37 chr1 27954236 27954668 -214709685 - L2 LINE L2 0 3272 2809 2364 76 0 0 chr1 27954847 27955168 -214709185 - AluY SINE Alu 0 321 1 248 206 151 111 chr1 27955173 27955271 -214709082 - MIR SINE MIR -10 252 146 1846 139 20 14 chr1 27955271 27955432 -214708921 - AluSx SINE Alu -15 297 132 1970 97 13 13 chr1 27955432 27955740 -214708613 - AluSp SINE Alu -5 308 1 1846 139 20 14 chr1 27955740 27955873 -214708480 - AluSx SINE Alu -180 132 1 248 206 151 111 chr1 27955873 27955900 -214708453 - MIR SINE MIR -116 146 122 636 302 42 31 chr1 27955901 27956189 -214708164 + MER34 LTR ERV1 3 293 -249 2281 63 0 3 chr1 27956290 27956574 -214707779 + AluSq SINE Alu 14 296 -17 2369 69 0 3 chr1 27956574 27956878 -214707475 + AluY SINE Alu 1 303 -8 2214 103 0 3 chr1 27957027 27957328 -214707025 - AluSg SINE Alu -10 300 1 237 342 0 13 chr1 27957376 27957452 -214706901 + MIR SINE MIR 31 105 -157 2004 137 7 3 chr1 27957474 27957780 -214706573 + AluSx SINE Alu 5 311 -1 249 283 0 0 chr1 27958132 27958192 -214706161 + L2 LINE L2 3211 3270 -2 * 406 268 150 0 chr1 27958190 27958317 -214706036 - MIR SINE MIR 0 262 117 1174 139 5 60 chr1 27958331 27958547 -214705806 + AluJo SINE Alu 12 215 -97 1004 115 39 6 chr1 27958671 27958827 -214705526 + AluJb SINE Alu 132 292 -20 665 185 28 139 chr1 27958839 27958945 -214705408 - MLT1E LTR MaLR -398 195 79 2210 93 7 3 chr1 27958945 27959247 -214705106 + AluSq SINE Alu 2 304 -9 2480 71 3 0 chr1 27959248 27959559 -214704794 + AluSp SINE Alu 1 312 -1 665 185 28 139 chr1 27959559 27959666 -214704687 - MLT1E LTR MaLR -513 80 4 277 266 128 0 chr1 27959673 27959782 -214704571 + L1M4 LINE L1 3474 3596 -2550 284 277 0 0 chr1 27959829 27959894 -214704459 - L1ME LINE L1 -521 5600 5536 299 255 7 72 chr1 27959918 27960071 -214704282 - L1MC4 LINE L1 -5 8037 7895 275 121 241 0 chr1 27960080 27960138 -214704215 - L1ME2 LINE L1 -206 5958 5887 1252 102 0 6 chr1 27960140 27960317 -214704036 - AluSg/x SINE Alu 0 310 135 1159 211 71 20 chr1 27960318 27960612 -214703741 - L1ME2 LINE L1 -275 5889 5581 541 221 0 0 chr1 27960612 27960716 -214703637 + FLAM_C SINE Alu 39 142 -1 275 211 9 37 chr1 27960733 27960842 -214703511 + GA-rich Low_complexity Low_complexity 3 108 0 1037 229 21 21 chr1 27960850 27961130 -214703223 - L1ME2 LINE L1 -617 5547 5268 1096 161 37 155 chr1 27961133 27961487 -214702866 + AluYb8 SINE Alu 1 312 -6 2297 92 0 3 chr1 27961558 27961861 -214702492 - AluSx SINE Alu -10 302 1 1606 100 9 0 chr1 27961998 27962227 -214702126 + AluSg/x SINE Alu 82 312 0 370 183 37 0 chr1 27962229 27962311 -214702042 - L1ME2 LINE L1 -1053 5093 5009 287 269 29 39 chr1 27962311 27962335 -214702018 - MIR SINE MIR -78 184 161 2040 100 17 0 chr1 27962335 27962624 -214701729 + AluSx SINE Alu 1 294 -18 287 269 29 39 chr1 27962624 27962703 -214701650 - MIR SINE MIR -101 161 82 395 296 155 54 chr1 27963136 27963504 -214700849 - MERVL LTR ERVL -462 5302 4898 388 283 102 97 chr1 27963507 27963572 -214700781 - MERVL LTR ERVL -878 4776 4713 1729 164 11 3 chr1 27963572 27963859 -214700494 - AluJo SINE Alu -23 289 1 388 283 102 97 chr1 27963859 27964050 -214700303 - MERVL LTR ERVL -941 4713 4524 2175 125 0 0 chr1 27964050 27964354 -214699999 - AluSx SINE Alu -8 304 1 388 283 102 97 chr1 27964354 27964700 -214699653 - MERVL LTR ERVL -1130 4524 4168 446 215 0 6 chr1 27964711 27964888 -214699465 + (CCTG)n Simple_repeat Simple_repeat 3 178 0 378 239 0 0 chr1 27964904 27965080 -214699273 + (CCTG)n Simple_repeat Simple_repeat 3 178 0 2234 101 7 0 chr1 27965593 27965901 -214698452 - AluSx SINE Alu -1 311 2 376 324 45 28 chr1 27966041 27966288 -214698065 - MERVL LTR ERVL -1684 4080 3830 565 302 88 47 chr1 27967030 27967348 -214697005 - MERVL LTR ERVL -2156 3498 3168 283 317 17 42 chr1 27967656 27967776 -214696577 - MER5A DNA MER1_type -2 187 71 995 124 53 24 chr1 27967781 27967950 -214696403 - FRAM SINE Alu -7 169 1 366 206 29 0 chr1 27967966 27968034 -214696319 + AluS SINE Alu 1 70 -232 206 292 11 56 chr1 27968423 27968512 -214695841 - MIR3 SINE MIR -24 184 100 222 324 49 20 chr1 27968686 27968788 -214695565 + L2 LINE L2 3140 3244 -28 182 366 151 0 chr1 27971089 27971182 -214693171 - MIR3 SINE MIR -21 187 81 2116 63 53 3 chr1 27971239 27971523 -214692830 + AluY SINE Alu 1 298 -13 227 239 34 45 chr1 27971523 27971611 -214692742 + MER34 LTR ERV1 427 513 -29 596 246 0 0 chr1 27971648 27971762 -214692591 - MIR SINE MIR -141 121 8 827 188 0 0 chr1 27971785 27971939 -214692414 + FRAM SINE Alu 1 153 -23 1172 146 13 53 chr1 27971954 27972180 -214692173 + AluSg SINE Alu 49 265 -45 1251 92 6 0 chr1 27972269 27972433 -214691920 - AluSp SINE Alu -148 165 1 272 150 0 0 chr1 27972433 27972473 -214691880 - Alu SINE Alu -268 40 1 765 181 25 12 chr1 27972769 27972929 -214691424 + MER5A DNA MER1_type 10 171 -18 1361 176 112 7 chr1 27973005 27973065 -214691288 - AluJb SINE Alu -5 307 1 1396 165 5 9 chr1 27973065 27973283 -214691070 - AluJb SINE Alu -95 217 1 1165 333 9 73 chr1 27973310 27973625 -214690728 + AluSx SINE Alu 1 295 -7 292 260 0 0 chr1 27973761 27973834 -214690519 + MIR SINE MIR 79 151 -111 363 283 145 0 chr1 27974619 27974757 -214689596 + MER5A DNA MER1_type 26 183 -6 2200 62 0 69 chr1 27974803 27975109 -214689244 + AluSc SINE Alu 6 290 -19 851 120 0 0 chr1 27975520 27975653 -214688700 + FLAM_C SINE Alu 1 133 0 257 180 0 16 chr1 27975659 27975720 -214688633 + GA-rich Low_complexity Low_complexity 2 61 0 271 237 9 105 chr1 27976122 27976236 -214688117 + LTR37A LTR ERV1 83 185 -241 611 165 22 3 chr1 27976238 27976386 -214687967 + LTR37A LTR ERV1 289 420 -6 259 236 0 0 chr1 27976682 27976737 -214687616 + MIR SINE MIR 95 149 -113 608 198 15 99 chr1 27977348 27977470 -214686883 - MIR SINE MIR -12 250 119 2285 93 3 0 chr1 27977470 27977761 -214686592 + AluSx SINE Alu 1 292 -20 2232 112 3 3 chr1 27977762 27978057 -214686296 + AluSq SINE Alu 3 297 -16 608 198 15 99 chr1 27978057 27978134 -214686219 - MIR SINE MIR -142 120 66 2168 108 7 29 chr1 27978238 27978565 -214685788 + AluSq SINE Alu 1 313 0 265 132 0 0 chr1 27978565 27978603 -214685750 + AluSq SINE Alu 134 171 -132 538 301 74 9 chr1 27978632 27978848 -214685505 + L2 LINE L2 3082 3311 -2 22 0 0 0 chr1 27979273 27979295 -214685058 + AT_rich Low_complexity Low_complexity 1 22 0 2229 110 3 7 chr1 27979329 27979638 -214684715 - AluSq SINE Alu -5 308 1 205 208 125 0 chr1 27979932 27979980 -214684373 - MIR SINE MIR -65 143 90 2313 115 3 0 chr1 27980029 27980333 -214684020 + AluSx SINE Alu 1 305 -7 465 318 60 0 chr1 27980426 27980577 -214683776 + MIR SINE MIR 47 206 -56 367 308 0 39 chr1 27980808 27980938 -214683415 - L2 LINE L2 -1 3271 3147 2506 79 0 0 chr1 27980976 27981279 -214683074 + AluY SINE Alu 2 304 -7 399 227 73 9 chr1 27981292 27981402 -214682951 - LTR16A LTR ERVL -188 262 146 266 324 140 0 chr1 27981594 27981773 -214682580 - L2 LINE L2 -556 2758 2555 464 283 0 0 chr1 27981974 27982087 -214682266 - LTR16A LTR ERVL -148 302 190 182 235 0 0 chr1 27982208 27982242 -214682111 + MIR SINE MIR 221 254 -8 260 154 31 31 chr1 27982580 27982645 -214681708 - LTR33A LTR ERVL -9 514 450 366 179 317 16 chr1 27982984 27983059 -214681294 - MIR SINE MIR 0 262 211 2382 112 0 0 chr1 27983059 27983372 -214680981 - AluSq SINE Alu 0 313 1 366 179 317 16 chr1 27983372 27983419 -214680934 - MIR SINE MIR -51 211 103 438 303 49 0 chr1 27984100 27984242 -214680111 + MIR SINE MIR 81 229 -33 2099 117 4 0 chr1 27984296 27984627 -214679726 + AluSx SINE Alu 1 332 0 789 226 74 18 chr1 27984627 27984844 -214679509 - MIR SINE MIR -14 248 20 1803 61 0 73 chr1 27985427 27985672 -214678681 - AluSg/x SINE Alu -1 311 85 453 293 172 23 chr1 27986400 27986748 -214677605 - L2 LINE L2 -84 3229 2830 2433 92 0 7 chr1 27986811 27987116 -214677237 + AluSx SINE Alu 1 303 -9 2233 119 3 22 chr1 27987177 27987496 -214676857 + AluSq SINE Alu 1 313 0 624 249 91 0 chr1 27987503 27987668 -214676685 - L2 LINE L2 -1389 1925 1746 2067 145 7 0 chr1 27987668 27987978 -214676375 + AluSx SINE Alu 1 312 0 505 245 103 86 chr1 27988103 27988202 -214676151 - L2 LINE L2 -1548 1766 1670 2380 86 3 3 chr1 27988202 27988504 -214675849 - AluSx SINE Alu -10 302 1 1710 156 7 28 chr1 27988509 27988827 -214675526 - AluJo SINE Alu 0 312 1 505 245 103 86 chr1 27988827 27989059 -214675294 - L2 LINE L2 -1647 1667 1422 2382 117 20 30 chr1 27989059 27989280 -214675073 - MER41E LTR ERV1 0 512 295 2382 110 0 3 chr1 27989280 27989590 -214674763 - AluSx SINE Alu -3 309 1 2382 117 20 30 chr1 27989590 27989761 -214674592 - MER41E LTR ERV1 -217 295 124 1285 161 35 16 chr1 27989771 27990075 -214674278 - MER61B LTR ERV1 -28 396 1 787 97 9 0 chr1 27990075 27990187 -214674166 - MER41E LTR ERV1 -385 127 15 1706 244 74 41 chr1 27990254 27990915 -214673438 - L2 LINE L2 -1890 1424 742 454 274 36 63 chr1 27990964 27991142 -214673211 + MIR SINE MIR 18 199 -63 2251 116 0 3 chr1 27991142 27991443 -214672910 + AluSx SINE Alu 1 300 -12 2201 128 3 3 chr1 27991443 27991748 -214672605 + AluSg SINE Alu 1 305 -5 454 274 36 63 chr1 27991748 27991805 -214672548 + MIR SINE MIR 197 247 -15 238 225 135 0 chr1 27991924 27992013 -214672340 - MIR3 SINE MIR -9 199 99 1738 188 11 0 chr1 27992068 27992355 -214671998 + AluJb SINE Alu 1 290 -22 2487 88 3 0 chr1 27992361 27992667 -214671686 + AluSx SINE Alu 1 307 -5 1308 196 71 25 chr1 27992682 27992962 -214671391 + AluJo SINE Alu 4 296 -16 1996 144 23 3 chr1 27992964 27993270 -214671083 + AluSx SINE Alu 1 312 0 2355 92 3 10 chr1 27993696 27994001 -214670352 + AluSg SINE Alu 2 304 -6 267 275 73 9 chr1 27994088 27994152 -214670201 + MIR3 SINE MIR 90 165 -43 2205 106 0 23 chr1 27994152 27994453 -214669900 + AluSx SINE Alu 1 294 -18 267 275 73 9 chr1 27994453 27994497 -214669856 + MIR3 SINE MIR 165 205 -3 716 156 16 0 chr1 27994791 27994913 -214669440 + AluJb SINE Alu 2 125 -187 2026 120 46 0 chr1 27994943 27995226 -214669127 + AluSx SINE Alu 1 296 -16 338 229 124 57 chr1 27995226 27995331 -214669022 + L2 LINE L2 3202 3313 0 612 259 49 16 chr1 27995400 27995585 -214668768 + MIR SINE MIR 13 203 -59 2334 203 14 32 chr1 27995690 27995801 -214668552 - MLT1F LTR MaLR -59 483 371 2274 106 7 0 chr1 27995801 27996094 -214668259 + AluSx SINE Alu 1 295 -17 2334 203 14 32 chr1 27996094 27996474 -214667879 - MLT1F LTR MaLR -171 371 1 995 31 78 0 chr1 27996556 27996685 -214667668 + MER85 DNA T2_type 1 139 0 2005 86 13 70 chr1 27997083 27997397 -214666956 + AluSx SINE Alu 1 296 -16 239 186 14 43 chr1 27997586 27997656 -214666697 - MLT1K LTR MaLR -339 249 182 2595 68 3 0 chr1 27997885 27998196 -214666157 + AluSq SINE Alu 1 312 -1 1185 102 57 23 chr1 27998326 27998343 -214666010 + AluSg/x SINE Alu 120 135 -177 2153 136 0 3 chr1 27998343 27998653 -214665700 + AluJb SINE Alu 1 309 -3 1185 102 57 23 chr1 27998653 27998811 -214665542 + AluSg/x SINE Alu 135 301 -11 264 320 0 0 chr1 27998813 27998888 -214665465 + MER5A DNA MER1_type 109 183 -6 183 184 0 0 chr1 27999114 27999152 -214665201 + T-rich Low_complexity Low_complexity 5 42 0 26 30 0 0 chr1 27999169 27999202 -214665151 + AT_rich Low_complexity Low_complexity 1 33 0 660 258 148 32 chr1 27999399 27999837 -214664516 + MLT1H LTR MaLR 19 549 0 234 171 110 24 chr1 27999913 27999995 -214664358 - MLT1J LTR MaLR -20 491 403 2003 142 0 36 chr1 28000052 28000197 -214664156 + AluJb SINE Alu 1 132 -180 2265 90 0 0 chr1 28000197 28000502 -214663851 + AluSg1 SINE Alu 1 305 0 2003 142 0 36 chr1 28000502 28000664 -214663689 + AluJb SINE Alu 132 298 -14 2259 96 0 14 chr1 28000812 28001136 -214663217 - AluSp SINE Alu 0 313 1 272 219 0 0 chr1 28001136 28001200 -214663153 + MLT1F1 LTR MaLR 500 563 -4 3965 95 97 3 chr1 28001491 28002080 -214662273 + LTR9B LTR ERV1 1 644 0 265 159 0 0 chr1 28002363 28002407 -214661946 + MSTC LTR MaLR 1 44 -384 353 333 0 0 chr1 28002437 28002527 -214661826 + L1MC4 LINE L1 6614 6703 -1339 2582 59 0 3 chr1 28002530 28002833 -214661520 - AluY SINE Alu -9 302 1 1891 169 0 3 chr1 28002834 28003129 -214661224 - AluJb SINE Alu -18 294 1 2318 158 16 0 chr1 28003130 28003517 -214660836 + MSTC LTR MaLR 36 428 0 2141 109 0 0 chr1 28004455 28004730 -214659623 + AluSx SINE Alu 3 277 -35 268 301 65 11 chr1 28005169 28005262 -214659091 + MIR SINE MIR 98 195 -67 326 296 134 43 chr1 28005270 28005456 -214658897 + MIR SINE MIR 9 211 -51 677 202 90 28 chr1 28005531 28005558 -214658795 + MIR SINE MIR 3 27 -235 2226 101 21 0 chr1 28005558 28005845 -214658508 + AluSg SINE Alu 3 295 -15 677 202 90 28 chr1 28005845 28005995 -214658358 + MIR SINE MIR 27 191 -71 785 263 93 32 chr1 28009404 28009610 -214654743 - L2 LINE L2 -32 3281 3048 2456 99 0 0 chr1 28009610 28009912 -214654441 + AluSx SINE Alu 1 302 -10 785 263 93 32 chr1 28009912 28010017 -214654336 - L2 LINE L2 -265 3048 2951 255 318 52 19 chr1 28010144 28010298 -214654055 - MIR SINE MIR 0 262 104 2302 66 4 0 chr1 28010485 28010757 -214653596 - AluSg SINE Alu -12 298 26 1163 121 24 0 chr1 28010868 28011057 -214653296 - AluSg/x SINE Alu 0 305 113 2274 119 0 7 chr1 28012075 28012410 -214651943 - AluSx SINE Alu 0 312 1 273 356 0 29 chr1 28013071 28013199 -214651154 - MIR SINE MIR -65 143 27 2179 120 13 10 chr1 28013199 28013508 -214650845 - AluSq SINE Alu -1 312 3 273 356 0 29 chr1 28013508 28013521 -214650832 - MIR SINE MIR -181 27 15 201 176 0 0 chr1 28013521 28013555 -214650798 + T-rich Low_complexity Low_complexity 1 34 0 1505 91 0 0 chr1 28013580 28013766 -214650587 + AluSg/x SINE Alu 117 302 -10 1599 180 25 11 chr1 28013770 28014048 -214650305 - AluJo SINE Alu -30 282 1 2006 140 3 17 chr1 28014050 28014350 -214650003 - AluJb SINE Alu -15 297 2 388 130 0 43 chr1 28014591 28014660 -214649693 + Alu SINE Alu 237 302 0 914 298 53 14 chr1 28014674 28015087 -214649266 + L1ME LINE L1 5338 5766 -404 2251 92 3 0 chr1 28015087 28015370 -214648983 + AluSp SINE Alu 29 312 -1 1591 120 152 4 chr1 28015383 28015633 -214648720 + AluJb SINE Alu 1 287 -25 2142 118 44 25 chr1 28015651 28015717 -214648636 - MER41E LTR ERV1 -142 370 307 2464 89 3 0 chr1 28015717 28016021 -214648332 - AluSq SINE Alu -8 305 1 2142 118 44 25 chr1 28016021 28016317 -214648036 - MER41E LTR ERV1 -205 307 1 1479 219 159 102 chr1 28016398 28017305 -214647048 - L2 LINE L2 -1 3312 2458 443 158 0 49 chr1 28017305 28017430 -214646923 + AluSg/x SINE Alu 205 325 0 1479 219 159 102 chr1 28017430 28017639 -214646714 - L2 LINE L2 -855 2458 2262 2040 131 7 7 chr1 28017639 28017937 -214646416 + AluSx SINE Alu 3 300 -12 1479 219 159 102 chr1 28017937 28017962 -214646391 - L2 LINE L2 -1051 2262 2240 2236 126 0 0 chr1 28017962 28018264 -214646089 + AluSx SINE Alu 1 302 -10 1479 219 159 102 chr1 28018264 28018345 -214646008 - L2 LINE L2 -1073 2240 1923 2177 138 79 3 chr1 28018345 28018780 -214645573 + L1M4 LINE L1 5211 5669 -509 2273 111 3 0 chr1 28018782 28019079 -214645274 + AluSx SINE Alu 1 298 -14 1212 85 24 0 chr1 28019108 28019272 -214645081 + AluY SINE Alu 2 169 -142 1102 164 36 41 chr1 28019380 28019529 -214644824 + MLT1E1 LTR MaLR 436 584 -70 284 0 28 0 chr1 28019529 28019565 -214644788 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2245 98 7 0 chr1 28019567 28019844 -214644509 - AluSx SINE Alu -32 280 2 1102 164 36 41 chr1 28019844 28019911 -214644442 + MLT1E1 LTR MaLR 585 654 0 335 342 107 55 chr1 28019972 28020063 -214644290 - L2 LINE L2 -1638 1676 1591 1639 159 39 39 chr1 28020063 28020371 -214643982 + AluJo SINE Alu 1 308 -4 335 342 107 55 chr1 28020371 28020974 -214643379 - L2 LINE L2 -1723 1591 946 847 262 129 36 chr1 28021010 28021476 -214642877 - MLT1J LTR MaLR -2 509 1 317 278 20 66 chr1 28021525 28021676 -214642677 - L1ME LINE L1 -344 5777 5634 475 353 43 30 chr1 28021833 28022162 -214642191 + L1MEd LINE L1 337 669 -5450 2495 70 3 0 chr1 28022208 28022507 -214641846 + AluSp SINE Alu 1 300 -13 2210 113 0 0 chr1 28022522 28022815 -214641538 + AluSg SINE Alu 1 293 -17 373 209 19 38 chr1 28022898 28023031 -214641322 + L1M4 LINE L1 5176 5307 -839 2237 106 0 7 chr1 28023031 28023332 -214641021 + AluSc SINE Alu 3 301 -8 373 209 19 38 chr1 28023332 28023356 -214640997 + L1M4 LINE L1 5307 5330 -816 1461 169 0 8 chr1 28023360 28023603 -214640750 + AluJb SINE Alu 18 258 -54 542 302 86 59 chr1 28023705 28024030 -214640323 + LTR33 LTR ERVL 67 382 -139 1787 134 4 0 chr1 28024030 28024292 -214640061 - AluSx SINE Alu -49 263 1 542 302 86 59 chr1 28024292 28024338 -214640015 + LTR33 LTR ERVL 382 425 -96 1710 151 39 7 chr1 28024338 28024622 -214639731 - AluJo SINE Alu -19 293 1 542 302 86 59 chr1 28024622 28024690 -214639663 + LTR33 LTR ERVL 425 519 -2 1570 100 0 0 chr1 28026314 28026524 -214637829 - AluSq SINE Alu -14 299 90 524 269 67 21 chr1 28026842 28027020 -214637333 + MIR SINE MIR 64 249 -13 937 94 23 0 chr1 28027485 28027613 -214636740 - AluY SINE Alu -180 131 1 1917 101 77 3 chr1 28028374 28028660 -214635693 - AluSx SINE Alu -5 307 1 2155 114 3 0 chr1 28029785 28030092 -214634261 + AluSp SINE Alu 1 308 -5 21 36 0 0 chr1 28031259 28031287 -214633066 + GC_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr1 28031887 28031925 -214632428 + GC_rich Low_complexity Low_complexity 1 38 0 27 81 0 0 chr1 28032136 28032198 -214632155 + GC_rich Low_complexity Low_complexity 1 62 0 218 296 0 31 chr1 28032273 28032371 -214631982 + G-rich Low_complexity Low_complexity 5 99 0 30 0 0 0 chr1 28032620 28032650 -214631703 + GC_rich Low_complexity Low_complexity 1 30 0 204 307 79 10 chr1 28032848 28032949 -214631404 - MIR3 SINE MIR -98 110 3 * 219 286 24 71 chr1 28032949 28032998 -214631355 + MIR3 SINE MIR 90 132 -76 2292 82 0 7 chr1 28033274 28033578 -214630775 + AluSx SINE Alu 1 302 -10 1978 108 33 10 chr1 28033628 28033933 -214630420 + AluSx SINE Alu 1 312 0 203 363 0 17 chr1 28033933 28034023 -214630330 - MIR SINE MIR -77 131 44 200 246 43 14 chr1 28035152 28035221 -214629132 + MIR SINE MIR 36 106 -156 421 324 41 6 chr1 28035278 28035448 -214628905 - MIR SINE MIR -79 183 8 260 227 23 45 chr1 28035551 28035639 -214628714 + L2 LINE L2 3187 3272 0 2171 120 0 16 chr1 28035642 28035778 -214628575 + AluSx SINE Alu 1 138 -174 2080 110 0 10 chr1 28035778 28036096 -214628257 + AluSc SINE Alu 1 309 0 2171 120 0 16 chr1 28036096 28036275 -214628078 + AluSx SINE Alu 138 311 -1 296 24 24 0 chr1 28036291 28036332 -214628021 + (GA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr1 28036353 28036373 -214627980 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 1006 178 28 6 chr1 28036373 28036548 -214627805 + AluSg/x SINE Alu 132 310 0 492 143 0 0 chr1 28036548 28036632 -214627721 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 1819 125 0 0 chr1 28036758 28037014 -214627339 - AluSg SINE Alu -54 256 1 6522 74 14 40 chr1 28037213 28038190 -214626163 - SVA Other Other -2 1384 433 4752 76 68 55 chr1 28038208 28039008 -214625345 - SVA Other Other -520 866 57 378 0 0 0 chr1 28039008 28039050 -214625303 + (GGGAGA)n Simple_repeat Simple_repeat 5 46 0 2240 95 3 0 chr1 28039054 28039348 -214625005 - AluSx SINE Alu -17 295 1 217 154 0 96 chr1 28039621 28039673 -214624680 + MIR SINE MIR 177 223 -39 2165 103 3 0 chr1 28039808 28040098 -214624255 + AluSq SINE Alu 1 291 -22 2132 108 3 13 chr1 28040176 28040491 -214623862 + AluSx SINE Alu 1 312 0 306 244 50 76 chr1 28040698 28040720 -214623633 + L2 LINE L2 2690 2711 -603 1875 155 30 0 chr1 28040720 28041016 -214623337 + AluJo SINE Alu 1 305 -7 306 244 50 76 chr1 28041016 28041112 -214623241 + L2 LINE L2 2711 2805 -509 716 241 71 14 chr1 28041117 28041329 -214623024 + MIR SINE MIR 39 262 0 1359 65 0 6 chr1 28041591 28041760 -214622593 + AluY SINE Alu 1 168 -143 1785 197 71 21 chr1 28041760 28042197 -214622156 - LTR2B LTR ERV1 0 490 32 1043 70 14 0 chr1 28042216 28042358 -214621995 + AluY SINE Alu 165 308 -3 2492 68 0 0 chr1 28042502 28042810 -214621543 + AluY SINE Alu 1 308 -3 1033 73 0 0 chr1 28043713 28043850 -214620503 + AluSg/x SINE Alu 173 309 -1 472 267 149 9 chr1 28044776 28044997 -214619356 + MLT1L LTR MaLR 39 290 -325 908 303 24 1 chr1 28045048 28045303 -214619050 + MIR SINE MIR 2 262 0 318 172 0 0 chr1 28045305 28045363 -214618990 + MLT1L LTR MaLR 335 392 -223 1050 129 10 67 chr1 28045418 28045611 -214618742 - AluJb SINE Alu 0 312 131 2064 93 18 0 chr1 28045630 28045943 -214618410 + AluSx SINE Alu 1 318 0 428 0 19 0 chr1 28046182 28046234 -214618119 + (TG)n Simple_repeat Simple_repeat 2 54 0 1260 161 22 52 chr1 28046235 28046502 -214617851 - AluJo SINE Alu -53 259 1 837 181 0 0 chr1 28046552 28046685 -214617668 - FLAM_A SINE Alu 0 133 1 394 185 0 12 chr1 28046721 28046802 -214617551 - MER116 DNA Mariner 0 80 1 692 275 61 26 chr1 28046820 28047162 -214617191 - L1ME3A LINE L1 -220 5950 5597 203 278 237 0 chr1 28047340 28047437 -214616916 - MIR SINE MIR -57 205 86 283 253 0 36 chr1 28047451 28047534 -214616819 + MIR SINE MIR 90 169 -93 2131 75 4 4 chr1 28047584 28047891 -214616462 - AluSg SINE Alu 0 307 1 419 304 150 20 chr1 28048246 28048493 -214615860 - L2 LINE L2 -2 3270 2992 294 322 81 20 chr1 28049605 28049754 -214614599 - MIR SINE MIR -21 241 84 516 331 35 6 chr1 28049990 28050162 -214614191 + MIR SINE MIR 20 196 -66 212 327 0 0 chr1 28050168 28050223 -214614130 + L2 LINE L2 3225 3279 -34 358 263 122 19 chr1 28050513 28050669 -214613684 + MIR SINE MIR 78 249 -13 322 179 35 172 chr1 28050661 28050736 -214613617 + L2 LINE L2 3189 3273 -40 * 2186 79 13 23 chr1 28050736 28051041 -214613312 + AluSc SINE Alu 1 302 -7 322 179 35 172 chr1 28051041 28051053 -214613300 + L2 LINE L2 3273 3285 -28 1926 114 14 7 chr1 28051053 28051357 -214612996 + AluSx SINE Alu 1 306 0 322 179 35 172 chr1 28051357 28051412 -214612941 + L2 LINE L2 3285 3313 0 302 291 114 46 chr1 28051659 28051896 -214612457 - L2 LINE L2 -24 3248 2996 791 191 79 41 chr1 28051899 28051934 -214612419 - L1MC4 LINE L1 -31 8011 7979 1622 179 6 31 chr1 28051934 28052252 -214612101 + AluJo SINE Alu 1 310 -2 791 191 79 41 chr1 28052252 28052788 -214611565 - L1MC4 LINE L1 -63 7979 7317 252 227 0 118 chr1 28052845 28052964 -214611389 - MIR SINE MIR -74 134 30 2264 92 0 0 chr1 28053199 28053494 -214610859 - AluSg SINE Alu -15 295 1 4288 119 19 34 chr1 28053982 28054011 -214610342 - L1MB3 LINE L1 -14 6169 6141 2175 127 0 0 chr1 28054011 28054310 -214610043 + AluSx SINE Alu 1 299 -13 4288 119 19 34 chr1 28054310 28054557 -214609796 - L1MB3 LINE L1 -42 6141 5892 2035 145 0 0 chr1 28054557 28054860 -214609493 - AluJb SINE Alu -7 305 3 4288 119 19 34 chr1 28054860 28055280 -214609073 - L1MB3 LINE L1 -291 5892 5483 1003 152 147 0 chr1 28055314 28055518 -214608835 + MER46A DNA MER2_type 2 235 -1 2407 86 0 9 chr1 28055521 28055836 -214608517 - AluSx SINE Alu 0 312 1 310 315 90 4 chr1 28058162 28058322 -214606031 - MIR SINE MIR -64 144 14 2288 80 3 16 chr1 28059397 28059709 -214604644 - AluSp SINE Alu -5 308 1 253 161 74 62 chr1 28059767 28059848 -214604505 - MIR SINE MIR -112 150 69 1982 127 0 39 chr1 28060452 28060612 -214603741 - AluSx SINE Alu -16 296 152 2373 77 0 0 chr1 28060612 28060910 -214603443 - AluY SINE Alu -13 298 1 1982 127 0 39 chr1 28060910 28061057 -214603296 - AluSx SINE Alu -160 152 1 2185 103 13 0 chr1 28061664 28061965 -214602388 - AluSx SINE Alu -7 305 1 322 216 148 0 chr1 28061989 28062077 -214602276 - MIR SINE MIR -75 133 33 2075 107 0 4 chr1 28063486 28063766 -214600587 - AluSq SINE Alu -24 289 11 1730 106 12 4 chr1 28063768 28064013 -214600340 - AluSg SINE Alu -63 247 1 1742 144 53 7 chr1 28064038 28064323 -214600030 + AluJb SINE Alu 2 299 -13 1930 76 0 59 chr1 28064341 28064629 -214599724 + AluY SINE Alu 1 271 -40 432 214 24 63 chr1 28064797 28064923 -214599430 + L2 LINE L2 3193 3313 0 1705 157 0 34 chr1 28065029 28065322 -214599031 + AluJo SINE Alu 13 295 -17 233 244 39 13 chr1 28065925 28066003 -214598350 - L2 LINE L2 -23 3290 3211 2316 84 0 0 chr1 28066226 28066522 -214597831 - AluSg1 SINE Alu -12 297 2 378 246 197 0 chr1 28067128 28067270 -214597083 + MIR SINE MIR 43 212 -50 1956 104 25 53 chr1 28067306 28067624 -214596729 + AluSc SINE Alu 1 309 0 1543 107 0 13 chr1 28067627 28067852 -214596501 + AluSc SINE Alu 79 300 -9 2283 88 3 3 chr1 28068035 28068341 -214596012 - AluSp SINE Alu -7 306 1 252 150 0 0 chr1 28068341 28068381 -214595972 - Alu SINE Alu -262 40 1 772 181 25 12 chr1 28068677 28068837 -214595516 + MER5A DNA MER1_type 10 171 -18 1412 173 112 7 chr1 28068913 28069191 -214595162 - AluJb SINE Alu -5 307 1 1791 112 22 77 chr1 28069218 28069530 -214594823 + AluSx SINE Alu 1 295 -17 227 226 75 43 chr1 28069535 28069628 -214594725 + L2 LINE L2 2934 3029 -243 1971 159 13 0 chr1 28070587 28070895 -214593458 + AluJb SINE Alu 1 312 0 1546 162 7 65 chr1 28070955 28071263 -214593090 + AluJb SINE Alu 3 292 -20 1693 252 57 13 chr1 28071266 28071739 -214592614 + MER21B LTR ERV1 308 801 -62 345 176 24 12 chr1 28071764 28071849 -214592504 + L1MC5 LINE L1 7397 7482 -479 24 32 0 0 chr1 28071862 28071893 -214592460 + AT_rich Low_complexity Low_complexity 1 31 0 1839 112 16 70 chr1 28071896 28072046 -214592307 + AluSq SINE Alu 1 158 -155 2439 99 0 0 chr1 28072046 28072359 -214591994 + AluSp SINE Alu 1 313 0 324 0 0 0 chr1 28072363 28072399 -214591954 + (TA)n Simple_repeat Simple_repeat 2 37 0 1839 112 16 70 chr1 28072399 28072557 -214591796 + AluSq SINE Alu 161 297 -16 890 147 0 0 chr1 28072559 28072688 -214591665 - FLAM_C SINE Alu -4 129 1 1949 123 13 19 chr1 28072839 28073157 -214591196 + THE1C LTR MaLR 1 316 -59 485 83 14 0 chr1 28073178 28073250 -214591103 - THE1B LTR MaLR 0 364 292 2457 87 0 3 chr1 28073251 28073562 -214590791 + AluSx SINE Alu 1 310 -2 2509 58 7 0 chr1 28073578 28073872 -214590481 + AluY SINE Alu 1 296 -15 424 119 15 0 chr1 28073872 28073939 -214590414 + THE1C LTR MaLR 307 374 -1 785 94 14 22 chr1 28073939 28074077 -214590276 + THE1C-int LTR MaLR 1444 1580 0 1586 140 80 52 chr1 28074077 28074368 -214589985 + THE1C LTR MaLR 1 305 -70 2194 122 0 0 chr1 28074368 28074662 -214589691 - AluSc SINE Alu -15 294 1 1586 140 80 52 chr1 28074662 28074735 -214589618 + THE1C LTR MaLR 305 375 0 2462 216 31 23 chr1 28074735 28074821 -214589532 + L1MB2 LINE L1 5522 5606 -565 2418 100 7 0 chr1 28074821 28075130 -214589223 + AluSq SINE Alu 1 311 -2 2462 216 31 23 chr1 28075130 28075302 -214589051 + L1MB2 LINE L1 5606 5775 -396 1807 86 127 15 chr1 28075302 28075569 -214588784 + AluSg SINE Alu 1 297 -13 2462 216 31 23 chr1 28075569 28075914 -214588439 + L1MB2 LINE L1 5775 6131 -40 1480 176 42 46 chr1 28075918 28076056 -214588297 + AluJb SINE Alu 7 144 -168 2200 130 0 13 chr1 28076056 28076364 -214587989 + AluSg SINE Alu 1 304 -6 1480 176 42 46 chr1 28076364 28076532 -214587821 + AluJb SINE Alu 144 312 0 2119 118 0 56 chr1 28076549 28076748 -214587605 + AluSg SINE Alu 1 177 -133 2338 87 7 0 chr1 28076748 28077036 -214587317 - AluSc SINE Alu -19 290 1 2119 118 0 56 chr1 28077036 28077158 -214587195 + AluSg SINE Alu 177 304 -6 2331 85 0 0 chr1 28077158 28077466 -214586887 + AluSx SINE Alu 1 308 0 233 95 48 0 chr1 28077468 28077510 -214586843 + L1MB2 LINE L1 6118 6161 -10 2312 100 3 0 chr1 28077511 28077801 -214586552 - AluSx SINE Alu -21 291 1 1342 169 20 16 chr1 28077806 28078061 -214586292 - AluJo SINE Alu -12 300 45 1396 165 4 49 chr1 28078097 28078364 -214585989 + AluJb SINE Alu 42 296 -16 2441 96 0 0 chr1 28078490 28078793 -214585560 - AluSq SINE Alu -10 303 1 1023 230 69 45 chr1 28078896 28079110 -214585243 + MER2 DNA MER2_type 3 229 -116 831 150 0 0 chr1 28079110 28079243 -214585110 - FLAM_A SINE Alu 0 133 1 1023 230 69 45 chr1 28079243 28079363 -214584990 + MER2 DNA MER2_type 229 345 0 2320 177 32 9 chr1 28079363 28079827 -214584526 - L1MB3 LINE L1 -277 5906 5432 1036 193 0 0 chr1 28079828 28079994 -214584359 - AluJb SINE Alu -20 292 127 331 332 48 9 chr1 28080237 28080466 -214583887 - L1MB3 LINE L1 -1164 4982 4745 859 241 100 17 chr1 28080471 28080762 -214583591 + MER46C DNA MER2_type 19 333 -5 204 281 109 0 chr1 28080775 28080839 -214583514 - MIR SINE MIR -74 188 118 2340 110 0 0 chr1 28080839 28081147 -214583206 + AluSg SINE Alu 1 308 -2 286 228 114 0 chr1 28081151 28081230 -214583123 + FLAM_C SINE Alu 25 112 -21 432 0 0 0 chr1 28081230 28081278 -214583075 + (CA)n Simple_repeat Simple_repeat 2 49 0 236 179 0 0 chr1 28081302 28081341 -214583012 + Alu SINE Alu 240 278 -24 306 364 88 50 chr1 28081380 28081641 -214582712 + L2 LINE L2 2997 3267 -5 2232 121 7 0 chr1 28081644 28081951 -214582402 + AluSq SINE Alu 1 309 -4 206 292 254 15 chr1 28082074 28082204 -214582149 - MIR3 SINE MIR -15 193 33 1120 132 6 0 chr1 28082362 28082521 -214581832 + AluSp SINE Alu 137 296 -17 2408 99 3 0 chr1 28082521 28082824 -214581529 + AluSp SINE Alu 1 304 -9 2535 52 7 3 chr1 28082974 28083283 -214581070 - AluY SINE Alu -1 310 1 2239 113 0 0 chr1 28083361 28083685 -214580668 + AluSx SINE Alu 1 324 0 2274 119 3 0 chr1 28083691 28083993 -214580360 + AluSg SINE Alu 1 303 -7 221 287 167 0 chr1 28084052 28084160 -214580193 + MIR SINE MIR 40 165 -97 1958 101 36 22 chr1 28084782 28085060 -214579293 + AluSx SINE Alu 13 294 -18 289 274 44 18 chr1 28085213 28085326 -214579027 + MIR SINE MIR 122 237 -25 216 234 191 53 chr1 28086088 28086182 -214578171 - MIR SINE MIR -67 141 35 901 179 19 0 chr1 28087224 28087386 -214576967 + MER45A DNA AcHobo 2 166 -12 559 315 137 15 chr1 28087403 28087586 -214576767 + L2 LINE L2 1492 1651 -1663 1556 149 19 76 chr1 28087586 28087902 -214576451 - AluJo SINE Alu -14 298 1 559 315 137 15 chr1 28087902 28088045 -214576308 + L2 LINE L2 1651 1775 -1539 1995 114 45 14 chr1 28088045 28088334 -214576019 - AluSx SINE Alu -14 298 1 559 315 137 15 chr1 28088334 28088479 -214575874 + L2 LINE L2 1775 2022 -1292 1695 236 81 33 chr1 28088592 28089074 -214575279 + MER69 DNA AcHobo 41 545 -1981 1275 153 0 47 chr1 28089081 28089181 -214575172 + AluJb SINE Alu 1 104 -208 852 45 0 0 chr1 28089181 28089291 -214575062 + L1PA5 LINE L1 6040 6149 -5 1275 153 0 47 chr1 28089291 28089462 -214574891 + AluJb SINE Alu 104 304 -8 1923 150 3 35 chr1 28089464 28089666 -214574687 + AluSx SINE Alu 1 208 -104 2303 116 0 3 chr1 28089666 28089969 -214574384 + AluSq SINE Alu 1 302 -11 2209 91 27 7 chr1 28089969 28090265 -214574088 + AluSg SINE Alu 1 303 -7 1923 150 3 35 chr1 28090265 28090375 -214573978 + AluSx SINE Alu 206 304 -8 859 223 69 156 chr1 28090379 28090541 -214573812 + L1MC4a LINE L1 6470 6644 -1164 243 0 0 0 chr1 28090541 28090568 -214573785 + (TG)n Simple_repeat Simple_repeat 2 28 0 859 223 69 156 chr1 28090568 28090631 -214573722 + L1MC4a LINE L1 6644 6711 -1097 2269 119 7 3 chr1 28090631 28090934 -214573419 - AluSx SINE Alu -6 306 3 859 223 69 156 chr1 28090934 28090947 -214573406 + L1MC4a LINE L1 6711 6724 -1084 2066 146 0 13 chr1 28090947 28091262 -214573091 - AluSx SINE Alu -1 311 1 2015 151 0 3 chr1 28091265 28091564 -214572789 - AluSx SINE Alu -11 301 4 1765 180 17 3 chr1 28091565 28091865 -214572488 - AluJb SINE Alu -8 304 1 859 223 69 156 chr1 28091865 28092080 -214572273 + L1MC4a LINE L1 6725 6891 -917 1749 164 7 17 chr1 28092136 28092428 -214571925 - AluJo SINE Alu -14 298 10 344 159 43 0 chr1 28092438 28092507 -214571846 + MER69 DNA AcHobo 2453 2524 -2 618 175 58 0 chr1 28092512 28092632 -214571721 - MIR SINE MIR -109 153 27 210 351 147 11 chr1 28092784 28092975 -214571378 - MIR SINE MIR -25 237 21 240 284 136 0 chr1 28093279 28093367 -214570986 + MIR SINE MIR 23 122 -140 182 212 0 0 chr1 28093416 28093449 -214570904 + MIR SINE MIR 218 250 -12 364 224 0 0 chr1 28093454 28093521 -214570832 + L1MC4 LINE L1 6637 6703 -1339 352 294 47 0 chr1 28093477 28093562 -214570791 - L1MC4 LINE L1 -1339 6703 6615 * 2183 128 0 0 chr1 28093562 28093851 -214570502 - AluSx SINE Alu -23 289 1 407 286 124 0 chr1 28095192 28095231 -214569122 - MIR SINE MIR -46 216 183 2266 102 0 13 chr1 28095231 28095535 -214568818 - AluSx SINE Alu -12 300 1 407 286 124 0 chr1 28095535 28095680 -214568673 - MIR SINE MIR -79 183 9 1041 220 68 24 chr1 28095996 28096246 -214568107 - MIR SINE MIR 0 262 2 1760 151 6 72 chr1 28099115 28099261 -214565092 + AluJo SINE Alu 2 156 -156 2345 103 0 0 chr1 28099261 28099561 -214564792 + AluSx SINE Alu 1 300 -12 1640 103 66 4 chr1 28099564 28099806 -214564547 + AluSg1 SINE Alu 53 309 0 1760 151 6 72 chr1 28099806 28099986 -214564367 + AluJo SINE Alu 158 310 -2 2463 85 0 0 chr1 28100345 28100639 -214563714 - AluSq SINE Alu -19 294 1 467 350 111 37 chr1 28101036 28101468 -214562885 - L2 LINE L2 0 3272 2809 2507 76 0 0 chr1 28101647 28101968 -214562385 - AluY SINE Alu 0 321 1 250 206 151 111 chr1 28101973 28102071 -214562282 - MIR SINE MIR -10 252 146 1984 131 20 20 chr1 28102071 28102232 -214562121 - AluSx SINE Alu -15 297 134 2249 99 13 0 chr1 28102232 28102536 -214561817 - AluSp SINE Alu -5 308 1 1984 131 20 20 chr1 28102536 28102671 -214561682 - AluSx SINE Alu -177 135 1 250 206 151 111 chr1 28102671 28102698 -214561655 - MIR SINE MIR -116 146 122 555 257 127 84 chr1 28102699 28103088 -214561265 + MER34 LTR ERV1 3 374 -168 2413 87 0 0 chr1 28103088 28103387 -214560966 + AluSx SINE Alu 14 312 0 555 257 127 84 chr1 28103387 28103398 -214560955 + MER34 LTR ERV1 374 383 -159 2270 74 53 3 chr1 28103398 28103683 -214560670 + AluSx SINE Alu 1 299 -13 555 257 127 84 chr1 28103683 28103771 -214560582 + MER34 LTR ERV1 383 513 -29 602 246 0 0 chr1 28103808 28103922 -214560431 - MIR SINE MIR -141 121 8 880 188 0 0 chr1 28103945 28104099 -214560254 + FRAM SINE Alu 1 153 -23 1500 115 69 58 chr1 28104114 28104375 -214559978 + AluSx SINE Alu 49 312 0 2571 44 0 3 chr1 28104446 28104807 -214559546 - AluY SINE Alu 0 311 1 971 126 0 7 chr1 28104815 28104950 -214559403 - AluJo SINE Alu -178 134 1 21 89 0 0 chr1 28105037 28105093 -214559260 + AT_rich Low_complexity Low_complexity 1 56 0 228 109 22 22 chr1 28105421 28105467 -214558886 - MER92B LTR ERV1 0 636 591 2332 91 0 10 chr1 28105471 28105769 -214558584 - AluSx SINE Alu -17 295 1 764 203 32 6 chr1 28105776 28105934 -214558419 - AluJ SINE Alu -16 296 135 2420 194 70 20 chr1 28105971 28106532 -214557821 - MER92B LTR ERV1 -47 589 1 683 199 8 0 chr1 28106561 28106692 -214557661 - AluJ SINE Alu -170 132 1 2684 70 0 0 chr1 28106831 28107143 -214557210 + AluSx SINE Alu 1 312 0 273 166 5 8 chr1 28107148 28107365 -214556988 + AluJo SINE Alu 4 296 -6 598 263 89 58 chr1 28107375 28107736 -214556617 - L1ME LINE L1 -531 5631 5260 200 250 83 0 chr1 28107841 28107901 -214556452 - MIR SINE MIR -70 192 128 820 272 58 8 chr1 28109133 28109376 -214554977 - MIR SINE MIR -2 260 6 2149 136 7 3 chr1 28109570 28109880 -214554473 + AluJb SINE Alu 1 311 -1 1595 138 32 16 chr1 28109973 28110220 -214554133 + AluSx SINE Alu 50 300 -12 1856 136 21 4 chr1 28110373 28110680 -214553673 - AluJb SINE Alu 0 312 1 2560 68 0 0 chr1 28111499 28111795 -214552558 - AluY SINE Alu -15 296 1 2168 113 0 31 chr1 28111808 28112126 -214552227 - AluY SINE Alu -3 308 1 305 91 0 0 chr1 28112164 28112208 -214552145 + AluSg/x SINE Alu 192 235 -67 299 228 30 40 chr1 28112250 28112351 -214552002 - MIR SINE MIR -64 144 45 2300 87 28 0 chr1 28112606 28112892 -214551461 + AluSx SINE Alu 1 294 -18 1894 167 10 3 chr1 28112987 28113293 -214551060 - AluJo SINE Alu -4 308 1 541 316 17 17 chr1 28113491 28113668 -214550685 + MIR SINE MIR 42 218 -44 1045 176 12 0 chr1 28114542 28114712 -214549641 + AluJo SINE Alu 122 293 -19 2284 94 37 10 chr1 28114718 28115016 -214549337 + AluSc SINE Alu 2 307 -2 238 267 218 2 chr1 28115492 28115603 -214548750 + MIR SINE MIR 35 164 -59 214 314 0 0 chr1 28115583 28115634 -214548719 - L2 LINE L2 -83 3189 3139 * 642 160 56 0 chr1 28116268 28116393 -214547960 + AluJo/FLAM SINE Alu 2 133 -179 2279 107 0 13 chr1 28116395 28116529 -214547824 + AluSx SINE Alu 3 137 -175 2275 102 0 3 chr1 28116529 28116822 -214547531 + AluSg SINE Alu 1 292 -18 2279 107 0 13 chr1 28116822 28116997 -214547356 + AluSx SINE Alu 137 308 -4 215 273 66 41 chr1 28118871 28118992 -214545361 - MIR SINE MIR -118 144 21 * 452 285 63 6 chr1 28118953 28119111 -214545242 + MIR SINE MIR 31 197 -65 380 278 20 10 chr1 28119821 28119938 -214544415 + MIR SINE MIR 17 135 -73 326 265 122 0 chr1 28119941 28120039 -214544314 - L2 LINE L2 -272 3041 2932 914 189 65 5 chr1 28120040 28120225 -214544128 - MLT1A1 LTR MaLR 0 365 170 2502 71 0 3 chr1 28120376 28120672 -214543681 + AluSp SINE Alu 1 295 -18 2490 74 0 0 chr1 28120675 28120971 -214543382 + AluY SINE Alu 1 296 -15 280 223 98 54 chr1 28121271 28121383 -214542970 - MIR3 SINE MIR -23 185 69 2291 89 20 10 chr1 28121520 28121692 -214542661 - AluSq SINE Alu -8 305 127 2498 66 20 0 chr1 28121692 28121993 -214542360 - AluY SINE Alu -4 307 1 2291 89 20 10 chr1 28121993 28122122 -214542231 - AluSq SINE Alu -186 127 1 267 218 218 0 chr1 28122133 28122211 -214542142 - MIR SINE MIR -13 249 155 2362 80 0 0 chr1 28122657 28122959 -214541394 + AluY SINE Alu 1 302 -9 285 346 45 0 chr1 28123388 28123521 -214540832 - MIR SINE MIR -1 261 123 1957 123 3 3 chr1 28123528 28123837 -214540516 - AluSx SINE Alu 0 309 1 237 360 140 0 chr1 28123859 28123995 -214540358 - L2 LINE L2 -17 3255 3101 2006 72 0 0 chr1 28124473 28124724 -214539629 - AluY SINE Alu -7 304 54 2077 118 10 7 chr1 28124726 28125031 -214539322 - AluSq SINE Alu -7 306 1 1095 153 83 147 chr1 28126155 28126300 -214538053 - AluJo SINE Alu -7 295 179 2152 113 0 3 chr1 28126300 28126602 -214537751 - AluSq SINE Alu -12 301 1 1095 153 83 147 chr1 28126602 28126770 -214537583 - AluJo SINE Alu -123 179 2 1205 162 43 5 chr1 28126782 28126992 -214537361 - AluJb SINE Alu -10 302 85 2114 119 18 6 chr1 28127033 28127376 -214536977 + MER47A DNA MER2_type 20 366 0 223 309 95 16 chr1 28127598 28127724 -214536629 - L2 LINE L2 -212 3060 2925 699 197 0 8 chr1 28127770 28127887 -214536466 + FLAM_C SINE Alu 2 117 -26 26 30 0 0 chr1 28127892 28127925 -214536428 + AT_rich Low_complexity Low_complexity 1 33 0 2216 104 0 0 chr1 28127925 28128222 -214536131 + AluSc SINE Alu 1 297 -12 181 204 45 0 chr1 28128251 28128295 -214536058 - MIR SINE MIR -48 214 169 779 177 0 0 chr1 28129344 28129468 -214534885 - FLAM_A SINE Alu -6 127 4 586 246 62 26 chr1 28129471 28129640 -214534713 - MER113 DNA MER1_type? -205 316 155 2079 103 0 10 chr1 28129640 28129930 -214534423 + AluSc SINE Alu 1 287 -22 586 246 62 26 chr1 28129930 28129955 -214534398 - MER113 DNA MER1_type? -366 155 132 2116 101 10 0 chr1 28129955 28130243 -214534110 + AluSx SINE Alu 1 291 -21 586 246 62 26 chr1 28130243 28130319 -214534034 - MER113 DNA MER1_type? -389 132 35 2163 90 7 0 chr1 28130492 28130782 -214533571 - AluSg SINE Alu -18 292 1 2087 112 0 7 chr1 28132018 28132323 -214532030 + AluSq SINE Alu 1 303 -10 829 168 14 7 chr1 28132589 28132732 -214531621 + FRAM SINE Alu 21 164 -12 544 278 87 50 chr1 28132734 28133033 -214531320 - L1ME LINE L1 -302 5819 5510 1493 143 103 0 chr1 28134021 28134273 -214530080 - AluJb SINE Alu -20 292 15 2818 12 0 3 chr1 28134467 28134786 -214529567 + AluYb8 SINE Alu 1 318 0 863 129 30 0 chr1 28134841 28134973 -214529380 - AluJo SINE Alu -176 136 1 1994 123 0 13 chr1 28135205 28135506 -214528847 - AluSg SINE Alu -13 297 1 2321 82 0 19 chr1 28135518 28135835 -214528518 - AluY SINE Alu 0 311 1 2100 127 3 3 chr1 28136252 28136560 -214527793 - AluSx SINE Alu -4 308 1 1280 109 0 0 chr1 28136636 28136811 -214527542 - AluSq SINE Alu -5 308 134 1955 132 3 13 chr1 28136811 28137121 -214527232 - AluSq SINE Alu -6 307 1 2045 103 21 0 chr1 28137303 28137594 -214526759 + AluSx SINE Alu 1 297 -15 2081 118 3 3 chr1 28137606 28137902 -214526451 + AluSx SINE Alu 1 296 -16 383 271 119 40 chr1 28137903 28138054 -214526299 + MIR SINE MIR 25 187 -75 225 0 0 0 chr1 28138204 28138229 -214526124 + (GA)n Simple_repeat Simple_repeat 2 26 0 825 151 0 0 chr1 28138669 28138788 -214525565 + FLAM_C SINE Alu 2 120 -23 2076 92 0 10 chr1 28138792 28139084 -214525269 - AluY SINE Alu -18 293 5 2199 56 0 11 chr1 28139087 28139412 -214524941 - AluY SINE Alu 0 322 1 2045 128 3 3 chr1 28139412 28139718 -214524635 - AluSx SINE Alu -6 306 1 1817 132 28 60 chr1 28139896 28140215 -214524138 + AluJb SINE Alu 3 311 -1 555 16 0 0 chr1 28140223 28140287 -214524066 + (GA)n Simple_repeat Simple_repeat 1 64 0 1445 137 116 21 chr1 28140984 28141269 -214523084 + AluJb SINE Alu 1 312 0 2203 85 0 7 chr1 28141271 28141566 -214522787 + AluSg SINE Alu 1 293 -17 2588 32 3 0 chr1 28141568 28141878 -214522475 + AluY SINE Alu 1 311 0 1097 130 27 0 chr1 28141881 28142066 -214522287 + AluJo SINE Alu 117 306 -6 2202 84 3 7 chr1 28142068 28142364 -214521989 + AluSx SINE Alu 3 297 -15 385 250 154 22 chr1 28142396 28142532 -214521821 - MIR SINE MIR -80 182 29 2249 66 0 23 chr1 28142537 28142840 -214521513 - AluY SINE Alu -15 296 1 400 244 11 0 chr1 28142870 28142960 -214521393 - MIR3 SINE MIR -49 159 69 21 0 0 0 chr1 28143045 28143066 -214521287 + GC_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr1 28144170 28144205 -214520148 + (CA)n Simple_repeat Simple_repeat 1 35 0 266 324 99 14 chr1 28145852 28145994 -214518359 - MIR SINE MIR -35 227 74 921 126 0 22 chr1 28146656 28146791 -214517562 - FLAM_C SINE Alu -1 132 1 1717 169 30 7 chr1 28147368 28147670 -214516683 - AluJb SINE Alu -3 309 1 2268 92 0 0 chr1 28147714 28148017 -214516336 + AluY SINE Alu 1 303 -8 359 211 316 13 chr1 28148062 28148214 -214516139 + MIR SINE MIR 31 228 -34 2117 116 0 31 chr1 28148218 28148536 -214515817 - AluSq SINE Alu -5 308 1 1759 80 27 0 chr1 28148789 28149013 -214515340 + MER30 DNA MER1_type 1 230 0 376 303 114 0 chr1 28149626 28149758 -214514595 + L3b LINE CR1 1240 1386 -197 25 0 0 0 chr1 28149896 28149921 -214514432 + AT_rich Low_complexity Low_complexity 1 25 0 344 104 0 0 chr1 28149924 28149972 -214514381 - MER66A LTR ERV1 -144 334 287 608 264 81 0 chr1 28150085 28150259 -214514094 + MIR3 SINE MIR 20 207 -1 357 265 92 24 chr1 28150317 28150471 -214513882 + MIR SINE MIR 23 192 -67 180 152 0 0 chr1 28153664 28153697 -214510656 + (CA)n Simple_repeat Simple_repeat 1 33 0 418 292 50 12 chr1 28156065 28156234 -214508119 + MIR SINE MIR 23 194 -62 250 237 92 13 chr1 28156266 28156342 -214508011 - MER103 DNA DNA -77 89 8 186 255 0 0 chr1 28156832 28156879 -214507474 + MIR SINE MIR 45 91 -171 591 296 40 74 chr1 28158374 28158725 -214505628 + L2 LINE L2 2921 3259 -13 2112 107 3 3 chr1 28160207 28160505 -214503848 - AluSx SINE Alu -14 298 1 693 281 55 85 chr1 28160515 28160690 -214503663 + L1MC5 LINE L1 7312 7491 -470 942 205 0 0 chr1 28160690 28160856 -214503497 + FRAM SINE Alu 1 166 0 693 281 55 85 chr1 28160856 28161024 -214503329 + L1MC5 LINE L1 7491 7663 -298 1772 155 3 23 chr1 28161024 28161328 -214503025 + AluJo SINE Alu 1 298 -14 693 281 55 85 chr1 28161328 28161341 -214503012 + L1MC5 LINE L1 7663 7675 -286 2284 81 0 0 chr1 28161341 28161636 -214502717 + AluY SINE Alu 1 295 -16 693 281 55 85 chr1 28161636 28161911 -214502442 + L1MC5 LINE L1 7675 7926 -35 2401 56 20 3 chr1 28161915 28162221 -214502132 + AluY SINE Alu 1 311 0 238 174 0 61 chr1 28162222 28162320 -214502033 - L1MC4 LINE L1 -1337 6705 6614 344 256 21 10 chr1 28162322 28162418 -214501935 + L1MC3 LINE L1 6571 6646 -1139 * 345 182 45 0 chr1 28162359 28162425 -214501928 - L1MCa LINE L1 -4362 2064 1996 708 191 58 12 chr1 28162433 28162606 -214501747 + L1ME3A LINE L1 4477 4657 -1489 992 179 0 0 chr1 28162608 28162776 -214501577 + FRAM SINE Alu 1 166 -10 328 313 0 0 chr1 28162786 28162869 -214501484 + L1ME3A LINE L1 5119 5201 -945 2266 100 7 0 chr1 28162903 28163213 -214501140 + AluSx SINE Alu 1 312 0 2670 242 74 43 chr1 28163214 28163311 -214501042 + L1ME3A LINE L1 5191 5284 -886 2196 103 0 13 chr1 28163311 28163622 -214500731 + AluSx SINE Alu 1 307 -5 2670 242 74 43 chr1 28163622 28164197 -214500156 + L1ME3A LINE L1 5284 5840 -330 2219 106 3 0 chr1 28164197 28164499 -214499854 + AluSx SINE Alu 1 303 -9 2670 242 74 43 chr1 28164499 28164736 -214499617 + L1ME3A LINE L1 5840 6121 -49 2092 113 0 3 chr1 28164736 28165029 -214499324 - AluSx SINE Alu -20 292 1 2670 242 74 43 chr1 28165029 28165081 -214499272 + L1ME3A LINE L1 6121 6170 0 2226 109 6 0 chr1 28165095 28165406 -214498947 + AluSq SINE Alu 1 313 0 376 215 0 13 chr1 28165679 28165758 -214498595 - L2 LINE L2 -9 3304 3227 395 297 22 87 chr1 28165875 28166060 -214498293 + MIR SINE MIR 14 186 -22 512 247 120 13 chr1 28166097 28166247 -214498106 + MIR SINE MIR 97 262 0 711 186 0 0 chr1 28166260 28166373 -214497980 + AluJo/FLAM SINE Alu 2 114 -198 2213 104 3 3 chr1 28166373 28166682 -214497671 - AluSg SINE Alu -1 309 1 382 235 39 10 chr1 28166683 28166785 -214497568 + MIR SINE MIR 118 222 -40 336 333 0 32 chr1 28166974 28167100 -214497253 + MIR SINE MIR 22 143 -119 861 142 0 58 chr1 28167102 28167257 -214497096 + AluJo SINE Alu 1 146 -166 2051 99 7 14 chr1 28167257 28167540 -214496813 + AluSq SINE Alu 1 281 -32 304 213 49 0 chr1 28167554 28167615 -214496738 + AluSg/x SINE Alu 129 192 -110 562 187 0 28 chr1 28167685 28167792 -214496561 + FRAM SINE Alu 67 170 -6 2212 87 7 3 chr1 28167794 28168092 -214496261 + AluSx SINE Alu 1 299 -13 275 342 34 17 chr1 28168093 28168210 -214496143 + MIR SINE MIR 144 262 0 287 250 30 20 chr1 28168693 28168793 -214495560 - MER117 DNA MER1_type -96 101 1 247 214 143 12 chr1 28169000 28169084 -214495269 - L2 LINE L2 -1 3312 3218 189 238 262 0 chr1 28169090 28169174 -214495179 + L2 LINE L2 3207 3312 -1 181 308 19 0 chr1 28169676 28169728 -214494625 - L2 LINE L2 -20 3293 3241 381 309 48 18 chr1 28169806 28169971 -214494382 + MIR SINE MIR 29 198 -64 832 153 0 36 chr1 28170094 28170231 -214494122 + FLAM_C SINE Alu 2 133 -10 2181 106 10 3 chr1 28170241 28170552 -214493801 + AluSp SINE Alu 1 313 0 315 270 122 57 chr1 28170740 28170756 -214493597 + L1MC5 LINE L1 7479 7493 -468 2164 106 0 0 chr1 28170756 28171041 -214493312 + AluSx SINE Alu 1 285 -27 307 0 0 0 chr1 28171041 28171075 -214493278 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 315 270 122 57 chr1 28171075 28171275 -214493078 + L1MC5 LINE L1 7493 7679 -282 2223 68 0 17 chr1 28171275 28171569 -214492784 - AluY SINE Alu -22 289 1 211 104 42 21 chr1 28171576 28171624 -214492729 + (TA)n Simple_repeat Simple_repeat 1 49 0 315 270 122 57 chr1 28171624 28171646 -214492707 + L1MC5 LINE L1 7684 7793 -168 2453 80 0 0 chr1 28171668 28171979 -214492374 + AluY SINE Alu 1 311 0 405 248 119 0 chr1 28172492 28172593 -214491760 + MER81 DNA DNA 2 114 0 2277 88 0 0 chr1 28172814 28173110 -214491243 - AluSc SINE Alu -8 301 6 337 296 37 0 chr1 28174169 28174277 -214490076 + MIR SINE MIR 116 227 -35 228 221 16 11 chr1 28174982 28175131 -214489222 + L2 LINE L2 2892 3081 -232 1108 196 93 45 chr1 28175144 28175476 -214488877 + L2 LINE L2 2966 3313 0 695 242 130 9 chr1 28175477 28175692 -214488661 + MIR SINE MIR 3 243 -19 208 263 162 50 chr1 28175744 28175843 -214488510 + L2 LINE L2 3156 3265 -48 304 250 115 0 chr1 28176299 28176403 -214487950 - MER117 DNA MER1_type -32 165 50 189 107 0 0 chr1 28176438 28176466 -214487887 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 530 308 81 31 chr1 28176467 28176727 -214487626 - L2 LINE L2 -10 3262 2990 861 297 185 27 chr1 28176984 28177454 -214486899 + L2 LINE L2 2636 3214 -99 2100 104 3 7 chr1 28177454 28177780 -214486573 + AluSq SINE Alu 1 313 0 861 297 185 27 chr1 28177780 28177886 -214486467 + L2 LINE L2 3214 3302 -11 266 211 0 0 chr1 28177897 28177949 -214486404 - MIR SINE MIR 0 262 211 761 291 66 0 chr1 28178073 28178286 -214486067 - MIR SINE MIR -31 231 5 566 291 155 7 chr1 28178805 28179076 -214485277 - L2 LINE L2 0 3313 3003 217 253 137 0 chr1 28179186 28179281 -214485072 - L2 LINE L2 -599 2715 2608 801 231 71 5 chr1 28180049 28180261 -214484092 - MIR SINE MIR -32 230 5 180 111 0 0 chr1 28181560 28181587 -214482766 + (CTG)n Simple_repeat Simple_repeat 2 28 0 237 125 29 77 chr1 28181590 28181694 -214482659 + (CGGGG)n Simple_repeat Simple_repeat 3 101 0 27 49 0 0 chr1 28181738 28181779 -214482574 + GC_rich Low_complexity Low_complexity 1 41 0 206 157 43 29 chr1 28181857 28181927 -214482426 + (CCG)n Simple_repeat Simple_repeat 2 72 0 235 270 16 16 chr1 28182079 28182142 -214482211 - L2 LINE L2 -18 3254 3192 2058 187 59 119 chr1 28182439 28182503 -214481850 - MLT1E LTR MaLR -1 592 526 2172 78 20 3 chr1 28182503 28182796 -214481557 + AluSc SINE Alu 1 298 -11 2058 187 59 119 chr1 28182796 28183361 -214480992 - MLT1E LTR MaLR -67 526 1 2318 103 0 0 chr1 28183865 28184175 -214480178 - AluSq SINE Alu -3 310 1 1847 152 10 7 chr1 28184324 28184626 -214479727 + AluJo SINE Alu 1 303 -9 2133 85 23 23 chr1 28184626 28184931 -214479422 + AluSg SINE Alu 1 306 -4 625 200 0 0 chr1 28185026 28185136 -214479217 + AluJ SINE Alu 2 111 -201 1034 276 109 6 chr1 28185261 28185609 -214478744 + MLT1J2 LTR MaLR 67 450 0 418 132 40 0 chr1 28185898 28185974 -214478379 - LTR50 LTR ERVL 0 795 717 2164 114 0 3 chr1 28185974 28186273 -214478080 + AluSg SINE Alu 1 298 -12 1340 138 0 50 chr1 28186280 28186519 -214477834 + AluJb SINE Alu 86 312 0 28 48 0 0 chr1 28186551 28186593 -214477760 + AT_rich Low_complexity Low_complexity 1 42 0 1165 159 0 66 chr1 28186598 28186745 -214477608 + AluJo SINE Alu 1 129 -183 2401 71 0 0 chr1 28186745 28187041 -214477312 + AluY SINE Alu 1 296 -15 1165 159 0 66 chr1 28187041 28187119 -214477234 + AluJo SINE Alu 129 211 -101 521 152 48 0 chr1 28187131 28187236 -214477117 - LTR50 LTR ERVL -144 651 542 876 200 0 6 chr1 28187273 28187443 -214476910 - FAM SINE Alu -9 40 1 847 219 157 7 chr1 28187452 28187774 -214476579 - LTR50 LTR ERVL -389 406 18 1842 137 31 0 chr1 28187829 28188121 -214476232 - AluSg SINE Alu -9 301 1 1798 135 0 49 chr1 28188254 28188412 -214475941 - AluSx SINE Alu -23 289 125 2078 92 14 0 chr1 28188412 28188693 -214475660 - AluSg SINE Alu -15 295 11 2228 94 3 0 chr1 28188701 28188999 -214475354 - AluSx SINE Alu -13 299 1 1798 135 0 49 chr1 28188999 28189135 -214475218 - AluSx SINE Alu -194 118 1 2709 94 10 108 chr1 28189194 28189876 -214474477 - SVA Other Other -339 1047 433 2624 84 23 77 chr1 28189893 28191062 -214473291 - SVA Other Other -518 868 393 305 289 19 48 chr1 28191407 28191511 -214472842 - L1MC4 LINE L1 -1334 6708 6608 890 130 30 0 chr1 28191511 28191642 -214472711 - AluJb SINE Alu -177 135 1 2069 103 21 0 chr1 28191654 28191944 -214472409 - AluSx SINE Alu -16 296 1 313 369 0 0 chr1 28192085 28192207 -214472146 - HERVL LTR ERVL -2961 2693 2572 270 179 0 0 chr1 28192207 28192263 -214472090 + C-rich Low_complexity Low_complexity 1 56 0 358 204 20 10 chr1 28192264 28192362 -214471991 + CT-rich Low_complexity Low_complexity 4 102 0 2219 102 0 16 chr1 28192365 28192679 -214471674 - AluSg SINE Alu -1 309 1 2064 89 45 0 chr1 28192679 28192971 -214471382 - AluSp SINE Alu -6 307 3 756 253 11 5 chr1 28193057 28193113 -214471240 - HERVL LTR ERVL -3250 2514 2460 1876 154 3 0 chr1 28193113 28193405 -214470948 - AluJo SINE Alu -19 293 1 1798 154 0 17 chr1 28193407 28193699 -214470654 - 7SLRNA srpRNA srpRNA -10 310 24 756 253 11 5 chr1 28193699 28193829 -214470524 - HERVL LTR ERVL -3304 2460 2324 1244 169 143 90 chr1 28193831 28194062 -214470291 - MLT1B LTR MaLR -1 389 172 2188 110 0 16 chr1 28194062 28194239 -214470114 - AluSq SINE Alu 0 313 135 188 35 35 0 chr1 28194239 28194268 -214470085 + (TA)n Simple_repeat Simple_repeat 1 30 0 2260 78 0 0 chr1 28194269 28194562 -214469791 - AluY SINE Alu -18 293 1 2188 110 0 16 chr1 28194562 28194700 -214469653 - AluSq SINE Alu -177 136 1 1244 169 143 90 chr1 28194700 28194840 -214469513 - MLT1B LTR MaLR -218 172 1 1452 275 11 7 chr1 28194841 28195369 -214468984 - HERVL LTR ERVL -3438 2326 1705 1449 356 27 36 chr1 28195398 28195776 -214468577 - HERVL LTR ERVL -4174 1590 1210 1663 156 32 41 chr1 28195776 28195921 -214468432 + AluJb SINE Alu 1 146 -166 2154 107 7 0 chr1 28195921 28196221 -214468132 + AluSq SINE Alu 1 302 -11 1663 156 32 41 chr1 28196221 28196390 -214467963 + AluJb SINE Alu 146 312 0 1449 356 27 36 chr1 28196390 28196835 -214467518 - HERVL LTR ERVL -4554 1210 775 2413 228 161 10 chr1 28197465 28197976 -214466377 - LTR50 LTR ERVL 0 795 152 2232 88 0 3 chr1 28197976 28198270 -214466083 + AluSq SINE Alu 1 293 -20 2413 228 161 10 chr1 28198270 28198448 -214465905 - LTR50 LTR ERVL -643 152 2 2417 71 0 0 chr1 28198458 28198768 -214465585 - AluSg SINE Alu 0 310 1 1886 141 3 25 chr1 28198946 28199265 -214465088 + AluJb SINE Alu 1 312 0 1943 152 0 7 chr1 28199297 28199599 -214464754 - AluSx SINE Alu -12 300 1 1109 151 0 0 chr1 28199662 28199828 -214464525 + AluJb SINE Alu 144 309 -3 4372 158 41 24 chr1 28199828 28200509 -214463844 + L1MB3 LINE L1 5027 5695 -488 2402 62 0 31 chr1 28200509 28200829 -214463524 + AluY SINE Alu 1 310 -1 4372 158 41 24 chr1 28200829 28201060 -214463293 + L1MB3 LINE L1 5695 5921 -262 2078 122 0 3 chr1 28201060 28201356 -214462997 + AluSx SINE Alu 1 295 -17 4372 158 41 24 chr1 28201356 28201464 -214462889 + L1MB3 LINE L1 5921 6168 -15 804 194 0 70 chr1 28201656 28201842 -214462511 + FRAM SINE Alu 1 172 -4 2043 98 21 7 chr1 28201901 28202214 -214462139 + AluSg SINE Alu 1 310 0 1815 145 3 60 chr1 28202242 28202573 -214461780 + AluJo SINE Alu 1 312 0 535 189 72 85 chr1 28202960 28203007 -214461346 + MLT1J1 LTR MaLR 31 77 -369 891 188 39 0 chr1 28203007 28203188 -214461165 + MER53 DNA DNA 1 188 -1 535 189 72 85 chr1 28203188 28203293 -214461060 + MLT1J1 LTR MaLR 77 181 -265 2323 60 3 7 chr1 28203300 28203598 -214460755 + AluY SINE Alu 1 297 -14 578 0 0 47 chr1 28203601 28203687 -214460666 + (TCTCCC)n Simple_repeat Simple_repeat 2 83 0 6024 74 25 40 chr1 28203687 28205644 -214458709 + SVA Other Other 53 1386 0 556 278 82 5 chr1 28205663 28205857 -214458496 + MLT1J2 LTR MaLR 240 448 -2 1926 147 7 16 chr1 28205923 28206230 -214458123 - AluJb SINE Alu -8 304 1 431 241 213 0 chr1 28206295 28206436 -214457917 - MIR SINE MIR -1 261 91 2505 59 0 0 chr1 28206438 28206745 -214457608 - AluY SINE Alu -4 307 1 251 306 204 21 chr1 28206768 28206954 -214457399 + L2 LINE L2 2148 2367 -947 601 179 22 120 chr1 28206958 28207142 -214457211 - MIR SINE MIR -40 222 57 2479 52 0 3 chr1 28207443 28207748 -214456605 + AluSg SINE Alu 1 304 -6 283 229 60 169 chr1 28209533 28209734 -214454619 - MIR3 SINE MIR -11 197 19 27 29 0 0 chr1 28209745 28209779 -214454574 + AT_rich Low_complexity Low_complexity 1 34 0 1958 143 16 0 chr1 28209799 28210106 -214454247 - AluSx SINE Alu 0 312 1 208 321 46 113 chr1 28211850 28212069 -214452284 + L2 LINE L2 2887 3119 -153 2426 76 0 0 chr1 28212069 28212371 -214451982 + AluY SINE Alu 2 303 -8 2076 111 0 7 chr1 28212376 28212704 -214451649 + AluSx SINE Alu 1 312 0 208 321 46 113 chr1 28212704 28212800 -214451553 + L2 LINE L2 3123 3176 -96 2260 105 0 0 chr1 28212800 28213105 -214451248 - AluSg1 SINE Alu -4 305 1 208 321 46 113 chr1 28213105 28213196 -214451157 + L2 LINE L2 3176 3272 0 207 247 55 0 chr1 28214427 28214500 -214449853 - L2 LINE L2 -843 2471 2395 808 141 16 0 chr1 28214506 28214627 -214449726 + FLAM_C SINE Alu 14 136 -7 1798 151 0 24 chr1 28214629 28214921 -214449432 + AluJo SINE Alu 3 287 -25 1970 247 172 2 chr1 28214939 28215574 -214448779 - L2 LINE L2 -1171 2143 1401 229 320 0 0 chr1 28215600 28215678 -214448675 + L2 LINE L2 1316 1393 -1921 * 582 268 58 11 chr1 28215677 28215867 -214448486 - L2 LINE L2 -2592 722 524 2607 38 0 0 chr1 28215909 28216223 -214448130 + AluYb8 SINE Alu 1 314 -4 921 136 45 7 chr1 28216223 28216377 -214447976 + AluSg/x SINE Alu 134 293 -19 259 328 104 16 chr1 28216377 28216502 -214447851 + L2 LINE L2 3136 3271 -1 232 137 176 0 chr1 28216981 28217032 -214447321 - L2 LINE L2 0 3272 3213 567 269 26 47 chr1 28217337 28217530 -214446823 + MIR3 SINE MIR 20 208 0 276 300 136 36 chr1 28218051 28218191 -214446162 + MIR SINE MIR 35 188 -74 194 229 240 21 chr1 28218903 28218999 -214445354 + L2 LINE L2 3196 3312 -1 185 281 45 45 chr1 28219684 28219773 -214444580 - MIR3 SINE MIR -9 199 111 366 284 0 0 chr1 28219782 28219870 -214444483 - MIR SINE MIR -90 172 85 785 269 119 31 chr1 28222612 28222770 -214441583 + L2 LINE L2 2922 3065 -248 980 128 0 0 chr1 28222770 28222903 -214441450 - FLAM_C SINE Alu 0 133 1 785 269 119 31 chr1 28222903 28223104 -214441249 + L2 LINE L2 3065 3313 0 543 261 99 0 chr1 28223107 28223249 -214441104 - MIR3 SINE MIR -49 159 4 259 272 206 11 chr1 28223398 28223490 -214440863 - L2 LINE L2 -1 3271 3162 190 219 98 0 chr1 28223513 28223554 -214440799 + MIR SINE MIR 216 260 -2 276 252 81 54 chr1 28224983 28225094 -214439259 + MIR SINE MIR 72 185 -77 1170 258 187 37 chr1 28225330 28226228 -214438125 - L2 LINE L2 -6 3307 2242 204 67 0 0 chr1 28227346 28227376 -214436977 + (T)n Simple_repeat Simple_repeat 1 30 0 1675 149 26 78 chr1 28230221 28230258 -214434095 + AluJo SINE Alu 1 38 -264 1975 110 3 95 chr1 28230258 28230448 -214433905 - AluSx SINE Alu -16 296 147 2320 109 0 3 chr1 28230448 28230750 -214433603 - AluSx SINE Alu -11 301 1 1975 110 3 95 chr1 28230750 28230885 -214433468 - AluSx SINE Alu -165 147 1 1675 149 26 78 chr1 28230885 28231004 -214433349 + AluJo SINE Alu 38 162 -140 1704 176 13 36 chr1 28231004 28231305 -214433048 + AluJb SINE Alu 1 294 -18 1675 149 26 78 chr1 28231305 28231455 -214432898 + AluJo SINE Alu 162 292 -10 181 255 235 20 chr1 28231480 28231578 -214432775 + MIR SINE MIR 134 252 -10 296 273 186 0 chr1 28231645 28231806 -214432547 + MIR SINE MIR 70 260 -2 2447 54 14 0 chr1 28231963 28232259 -214432094 + AluY SINE Alu 1 300 -11 690 126 134 17 chr1 28232400 28232519 -214431834 + FLAM_C SINE Alu 1 133 0 216 0 0 0 chr1 28234821 28234845 -214429508 + (CTG)n Simple_repeat Simple_repeat 3 26 0 2301 101 0 26 chr1 28237752 28238060 -214426293 - AluSx SINE Alu -12 300 1 2135 123 3 0 chr1 28238312 28238604 -214425749 - AluSx SINE Alu -19 293 1 214 276 82 31 chr1 28238907 28239005 -214425348 - L2 LINE L2 -182 3090 2988 446 271 59 35 chr1 28240078 28240248 -214424105 - MIR SINE MIR -87 175 2 384 253 70 57 chr1 28240980 28241138 -214423215 - MIR SINE MIR -91 171 12 962 206 0 6 chr1 28242469 28242644 -214421709 - FRAM SINE Alu -5 171 1 2353 106 3 0 chr1 28242652 28242953 -214421400 - AluSp SINE Alu -11 302 1 2496 61 0 7 chr1 28243034 28243331 -214421022 - AluY SINE Alu -16 295 1 2161 97 17 3 chr1 28243333 28243621 -214420732 - AluSq SINE Alu -21 292 1 1181 162 0 75 chr1 28244220 28244271 -214420082 + AluJb SINE Alu 87 140 -172 1754 156 19 0 chr1 28244271 28244540 -214419813 + AluSx SINE Alu 1 274 -38 182 61 0 30 chr1 28244546 28244579 -214419774 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1181 162 0 75 chr1 28244579 28244748 -214419605 + AluJb SINE Alu 145 297 -15 2111 100 14 0 chr1 28244764 28245045 -214419308 - AluSg SINE Alu -25 285 1 27 0 0 0 chr1 28245897 28245924 -214418429 + AT_rich Low_complexity Low_complexity 1 27 0 211 250 97 14 chr1 28245977 28246049 -214418304 - MIR SINE MIR -115 147 70 730 151 14 22 chr1 28246796 28246935 -214417418 + L1MA5A LINE L1 6156 6293 -4 21 0 0 0 chr1 28247817 28247838 -214416515 + AT_rich Low_complexity Low_complexity 1 21 0 2366 65 10 3 chr1 28247838 28248130 -214416223 - AluSp SINE Alu -19 294 1 494 228 59 7 chr1 28248157 28248293 -214416060 - MER58B DNA MER1_type -8 333 191 1893 164 0 16 chr1 28249028 28249345 -214415008 + AluJb SINE Alu 1 312 0 1442 161 12 116 chr1 28249897 28250233 -214414120 - AluJb SINE Alu -1 301 1 1826 112 109 4 chr1 28250598 28250865 -214413488 + AluSg SINE Alu 1 295 -15 2021 76 8 11 chr1 28251039 28251303 -214413050 - AluY SINE Alu -3 308 46 1081 101 0 0 chr1 28251304 28251443 -214412910 - AluSg/x SINE Alu -13 297 159 2505 74 0 0 chr1 28251534 28251833 -214412520 + AluY SINE Alu 1 299 -12 2292 102 0 29 chr1 28251949 28252262 -214412091 - AluSx SINE Alu -8 304 1 955 133 0 7 chr1 28252263 28252406 -214411947 - AluJo SINE Alu -170 142 1 202 83 0 42 chr1 28252443 28252491 -214411862 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 2507 75 0 0 chr1 28252493 28252800 -214411553 + AluY SINE Alu 1 307 -4 399 311 115 57 chr1 28253309 28253404 -214410949 - MIR SINE MIR -4 258 170 1750 153 51 10 chr1 28253404 28253699 -214410654 - AluJb SINE Alu -5 307 1 399 311 115 57 chr1 28253699 28253847 -214410506 - MIR SINE MIR -92 170 1 356 261 101 29 chr1 28253860 28253998 -214410355 + MIR3 SINE MIR 13 160 -48 2067 83 0 4 chr1 28254429 28254682 -214409671 + AluY SINE Alu 1 252 -59 460 219 171 0 chr1 28256912 28257035 -214407318 - MIR SINE MIR -70 192 49 2396 82 0 0 chr1 28257272 28257563 -214406790 - AluSx SINE Alu -21 291 1 2506 66 0 3 chr1 28259350 28259653 -214404700 - AluY SINE Alu -9 302 1 21 0 0 0 chr1 28259664 28259685 -214404668 + AT_rich Low_complexity Low_complexity 1 21 0 245 246 49 0 chr1 28259737 28259798 -214404555 + MER102b DNA MER1_type 249 312 -29 186 43 0 0 chr1 28259907 28259930 -214404423 + (A)n Simple_repeat Simple_repeat 1 23 0 1884 144 0 23 chr1 28260670 28260975 -214403378 - AluJo SINE Alu -14 298 1 2111 105 19 32 chr1 28261466 28261781 -214402572 - AluSx SINE Alu -1 311 1 1028 119 14 0 chr1 28261781 28261924 -214402429 - AluY SINE Alu -166 145 1 2351 102 3 7 chr1 28262463 28262768 -214401585 - AluSp SINE Alu -9 304 1 347 235 66 11 chr1 28262856 28262948 -214401405 + MIR3 SINE MIR 56 154 -54 24 0 0 0 chr1 28264726 28264750 -214399603 + AT_rich Low_complexity Low_complexity 1 24 0 1632 95 22 5 chr1 28264760 28264982 -214399371 - AluSq SINE Alu -87 226 1 2244 107 7 3 chr1 28265548 28265847 -214398506 - AluSg SINE Alu -10 300 1 499 236 0 0 chr1 28265952 28266041 -214398312 - MER5A DNA MER1_type -87 102 14 276 334 161 21 chr1 28267274 28267702 -214396651 + L2 LINE L2 2007 2494 -820 273 294 84 28 chr1 28268270 28268413 -214395940 - L3 LINE CR1 -4 1573 1423 298 390 6 6 chr1 28268542 28268706 -214395647 - L2 LINE L2 -609 2705 2542 680 219 131 12 chr1 28269063 28269223 -214395130 + MER5A DNA MER1_type 10 188 -1 2254 75 12 56 chr1 28269349 28269669 -214394684 + AluSg1 SINE Alu 1 306 -3 466 97 0 0 chr1 28269677 28269739 -214394614 + Alu SINE Alu 1 62 -256 261 0 0 0 chr1 28469926 28469955 -214194398 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 497 318 68 17 chr1 28470156 28470332 -214194021 - MIR SINE MIR -66 196 12 231 326 21 11 chr1 28473580 28473675 -214190678 - MIR3 SINE MIR -51 157 62 343 324 173 11 chr1 28474035 28474214 -214190139 - MIR SINE MIR -9 253 46 256 336 67 25 chr1 28475062 28475181 -214189172 + L2 LINE L2 3100 3223 -49 1628 86 0 9 chr1 28475310 28475530 -214188823 - AluY SINE Alu -11 300 83 2120 103 0 17 chr1 28475541 28475833 -214188520 - AluSq SINE Alu -24 289 3 315 338 88 44 chr1 28475911 28476207 -214188146 - L2 LINE L2 0 3313 3005 190 329 85 0 chr1 28476508 28476590 -214187763 + MIR SINE MIR 59 147 -115 554 281 0 27 chr1 28476933 28477118 -214187235 + (TG)n Simple_repeat Simple_repeat 1 180 0 612 268 78 37 chr1 28477958 28478196 -214186157 - MIR SINE MIR -8 254 3 559 353 168 10 chr1 28478267 28478772 -214185581 - L3 LINE CR1 -509 1068 484 656 279 64 10 chr1 28480071 28480275 -214184078 + MIR SINE MIR 11 225 -37 2075 118 0 46 chr1 28480524 28480699 -214183654 - AluSx SINE Alu -4 308 153 2174 105 7 0 chr1 28480699 28480994 -214183359 - AluSx SINE Alu -15 297 1 2075 118 0 46 chr1 28480994 28481141 -214183212 - AluSx SINE Alu -159 153 1 2435 63 0 0 chr1 28481188 28481488 -214182865 - AluY SINE Alu -9 302 3 2228 280 82 24 chr1 28481542 28482739 -214181614 - L1ME3A LINE L1 -220 5950 4824 1898 140 3 34 chr1 28482739 28483061 -214181292 - AluJb SINE Alu 0 312 1 2228 280 82 24 chr1 28483061 28483406 -214180947 - L1ME3A LINE L1 -1346 4824 4500 2197 106 0 13 chr1 28483406 28483707 -214180646 - AluSx SINE Alu -15 297 1 2228 280 82 24 chr1 28483707 28484198 -214180155 - L1ME3A LINE L1 -1670 4500 3787 1797 175 0 40 chr1 28484213 28484538 -214179815 - AluJb SINE Alu 0 312 1 483 305 0 81 chr1 28484538 28484735 -214179618 - L1ME3A LINE L1 -2643 3503 3323 2253 97 0 3 chr1 28484769 28485068 -214179285 - AluSx SINE Alu -11 301 4 452 265 10 12 chr1 28485080 28485233 -214179120 - MIR SINE MIR -60 148 4 2174 112 0 16 chr1 28485693 28486006 -214178347 + AluSx SINE Alu 2 309 -3 502 249 115 54 chr1 28486438 28486631 -214177722 + MIR SINE MIR 4 203 -59 300 226 283 19 chr1 28486828 28486934 -214177419 - MIR3 SINE MIR -64 144 11 533 318 90 20 chr1 28487721 28487966 -214176387 - MIR SINE MIR 0 262 1 493 296 7 0 chr1 28488007 28488159 -214176194 - MER103 DNA DNA -3 163 11 293 169 51 0 chr1 28488262 28488321 -214176032 + MIR SINE MIR 92 153 -55 466 276 6 6 chr1 28488321 28488477 -214175876 + L1MEc LINE L1 43 198 -6198 255 311 0 37 chr1 28488642 28488777 -214175576 - L2 LINE L2 -222 3050 2921 5524 122 108 31 chr1 28488923 28489300 -214175053 + Tigger3b DNA MER2_type 1 347 -2681 3547 60 0 0 chr1 28489300 28489730 -214174623 - L1PA5 LINE L1 0 6154 5725 5524 122 108 31 chr1 28489730 28489862 -214174491 + Tigger3b DNA MER2_type 347 467 -2561 330 26 0 0 chr1 28489862 28489901 -214174452 + (TG)n Simple_repeat Simple_repeat 2 40 0 5524 122 108 31 chr1 28489901 28490266 -214174087 + Tigger3b DNA MER2_type 467 802 -2226 2245 97 0 3 chr1 28490266 28490565 -214173788 - AluSg SINE Alu -12 298 1 5524 122 108 31 chr1 28490565 28490828 -214173525 + Tigger3b DNA MER2_type 802 1228 -3 326 350 58 0 chr1 28491298 28491418 -214172935 - MIR3 SINE MIR 0 208 82 606 306 87 5 chr1 28492673 28492892 -214171461 - MIR SINE MIR -5 257 21 913 259 4 32 chr1 28493595 28493842 -214170511 - MIR SINE MIR 0 262 23 598 333 34 58 chr1 28494045 28494457 -214169896 - L2 LINE L2 0 3272 2871 201 74 0 0 chr1 28494879 28494906 -214169447 + (TCC)n Simple_repeat Simple_repeat 3 29 0 222 167 30 30 chr1 28494907 28494973 -214169380 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 2428 78 13 0 chr1 28495466 28495773 -214168580 - AluSq SINE Alu -2 311 1 1087 128 53 88 chr1 28495836 28496031 -214168322 - AluJo SINE Alu -10 302 115 1758 163 7 0 chr1 28496031 28496313 -214168040 + AluJb SINE Alu 29 312 0 1087 128 53 88 chr1 28496313 28496343 -214168010 - AluJo SINE Alu -197 115 85 1473 125 9 30 chr1 28496458 28496690 -214167663 + AluJo SINE Alu 1 227 -85 233 276 40 13 chr1 28496849 28496925 -214167428 - MIR SINE MIR -93 169 92 364 226 226 15 chr1 28496940 28497073 -214167280 + MER5A DNA MER1_type 27 187 -2 202 335 0 15 chr1 28497082 28497164 -214167189 - MIR SINE MIR -111 97 16 892 295 13 8 chr1 28497272 28497506 -214166847 - MIR SINE MIR 0 262 28 192 305 49 37 chr1 28499928 28500010 -214164343 - MIR SINE MIR -81 127 45 * 512 325 48 26 chr1 28499989 28500217 -214164136 + MIR SINE MIR 13 245 -17 1574 225 86 77 chr1 28501170 28501290 -214163063 - L1ME3A LINE L1 -10 6160 6043 1726 189 3 0 chr1 28501290 28501581 -214162772 + AluJo SINE Alu 1 292 -20 1574 225 86 77 chr1 28501581 28502122 -214162231 - L1ME3A LINE L1 -127 6043 5493 2195 108 0 3 chr1 28502300 28502595 -214161758 - AluSx SINE Alu -18 294 1 249 119 0 0 chr1 28503879 28503921 -214160432 + (TG)n Simple_repeat Simple_repeat 2 43 0 490 328 29 18 chr1 28504041 28504212 -214160141 + MIR SINE MIR 4 176 -86 797 300 184 13 chr1 28504212 28504662 -214159691 - MLT1K LTR MaLR 0 588 62 520 282 74 5 chr1 28505101 28505289 -214159064 - MIR SINE MIR -30 232 23 304 228 0 63 chr1 28505335 28505414 -214158939 + MIR SINE MIR 109 182 -80 646 300 150 17 chr1 28507750 28508103 -214156250 - L2 LINE L2 -4 3309 2910 384 243 98 7 chr1 28508594 28508732 -214155621 + MIR3 SINE MIR 14 168 -40 1749 150 3 56 chr1 28508737 28509057 -214155296 - AluJb SINE Alu -9 303 1 427 346 145 14 chr1 28509067 28509281 -214155072 - MIR SINE MIR -14 248 7 491 301 27 33 chr1 28509316 28509499 -214154854 + MIR SINE MIR 57 238 -24 376 360 67 24 chr1 28509983 28510314 -214154039 - L2 LINE L2 -49 3223 2879 313 291 126 0 chr1 28510381 28510484 -214153869 - MIR SINE MIR -64 144 29 186 143 0 0 chr1 28510489 28510524 -214153829 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 24 0 0 chr1 28511863 28511905 -214152448 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 429 277 17 8 chr1 28514370 28514489 -214149864 + MIR SINE MIR 93 212 -50 237 246 14 29 chr1 28514617 28514686 -214149667 + MIR3 SINE MIR 113 180 -28 312 292 204 0 chr1 28514891 28515028 -214149325 + MIR SINE MIR 79 243 -19 407 265 76 0 chr1 28515134 28515266 -214149087 + MIR3 SINE MIR 3 144 -64 549 228 92 33 chr1 28515516 28515783 -214148570 + MLT1H LTR MaLR 79 374 -168 205 375 55 16 chr1 28515931 28516059 -214148294 + L2 LINE L2 3124 3256 -16 205 320 196 16 chr1 28516163 28516357 -214147996 + MIR SINE MIR 20 248 -14 611 348 9 18 chr1 28516423 28516647 -214147706 - MIR SINE MIR -33 229 8 605 262 54 6 chr1 28517352 28517520 -214146833 - MIR SINE MIR -14 248 73 618 294 58 71 chr1 28517532 28518082 -214146271 + L2 LINE L2 2679 3271 -1 315 206 0 16 chr1 28518081 28518144 -214146209 - MIR SINE MIR -187 75 14 * 433 289 77 13 chr1 28518164 28518320 -214146033 + MIR3 SINE MIR 24 189 -19 347 310 70 25 chr1 28518515 28518673 -214145680 - MIR SINE MIR -76 186 22 438 315 43 6 chr1 28519254 28519416 -214144937 - MIR SINE MIR -76 186 19 716 199 0 78 chr1 28519979 28520174 -214144179 + LTR41 LTR ERVL 3 182 -591 395 260 138 6 chr1 28520539 28520720 -214143633 + LTR50 LTR ERVL 589 793 -2 9216 298 59 30 chr1 28521028 28522494 -214141859 + ERVL LTR ERVL 352 1774 -3990 2049 78 11 4 chr1 28522494 28522775 -214141578 + L1PB2 LINE L1 5867 6149 -2 9216 298 59 30 chr1 28522775 28525450 -214138903 + ERVL LTR ERVL 1774 4686 -1078 8609 48 3 0 chr1 28525798 28526764 -214137589 - LTR5 LTR ERVK 0 969 1 475 204 136 8 chr1 28527078 28527210 -214137143 - LTR41 LTR ERVL -624 149 1 1728 303 37 15 chr1 28527210 28527861 -214136492 + ERVL LTR ERVL 4811 5475 -289 2475 84 0 0 chr1 28527871 28528179 -214136174 - AluY SINE Alu -3 308 1 1573 113 0 5 chr1 28528181 28528403 -214135950 - L1PA15 LINE L1 -2 6163 5943 446 210 73 16 chr1 28528714 28528838 -214135515 + LTR41 LTR ERVL 19 149 -624 2235 109 0 0 chr1 28528865 28529182 -214135171 - AluSx SINE Alu 0 317 1 274 190 0 0 chr1 28529187 28529245 -214135108 + LTR50 LTR ERVL 714 771 -24 306 154 64 77 chr1 28529456 28529534 -214134819 + MIR SINE MIR 17 93 -115 902 159 139 50 chr1 28529749 28529950 -214134403 + MER20 DNA MER1_type 1 219 0 368 341 39 0 chr1 28529952 28530081 -214134272 - MIR3 SINE MIR -68 140 7 213 304 92 43 chr1 28530766 28530950 -214133403 + L2 LINE L2 2909 3101 -171 238 276 61 75 chr1 28531132 28531346 -214133007 + LTR16C LTR ERVL 251 461 -30 260 323 139 30 chr1 28531464 28531665 -214132688 + L2 LINE L2 3048 3270 -2 399 159 0 127 chr1 28532321 28532447 -214131906 - MIR SINE MIR -119 143 34 237 230 79 31 chr1 28532565 28532687 -214131666 + MIR SINE MIR 33 192 -70 197 196 18 0 chr1 28533079 28533135 -214131218 + GA-rich Low_complexity Low_complexity 1 57 0 554 332 106 5 chr1 28533216 28533415 -214130938 + MIR SINE MIR 28 246 -16 2515 88 0 0 chr1 28533687 28533992 -214130361 + AluSx SINE Alu 1 305 -7 221 333 12 0 chr1 28534161 28534242 -214130111 - MIR SINE MIR -82 126 45 234 241 0 0 chr1 28534773 28534827 -214129526 + (CA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chr1 28535441 28535465 -214128888 + AT_rich Low_complexity Low_complexity 1 24 0 2367 103 0 0 chr1 28535979 28536279 -214128074 - AluSg SINE Alu -10 300 1 2190 139 7 0 chr1 28536286 28536749 -214127604 - AluSx SINE Alu 0 465 1 289 292 62 0 chr1 28537173 28537269 -214127084 - L2 LINE L2 -25 3247 3146 272 296 20 10 chr1 28537285 28537383 -214126970 - MIR SINE MIR -81 127 29 439 329 94 5 chr1 28537838 28538051 -214126302 - MLT1K LTR MaLR -290 298 67 187 327 103 0 chr1 28538253 28538360 -214125993 + L2 LINE L2 2919 3036 -277 361 314 17 0 chr1 28539388 28539506 -214124847 + L2 LINE L2 2933 3052 -220 211 280 178 25 chr1 28539540 28539658 -214124695 + L2 LINE L2 3136 3271 -1 542 327 14 23 chr1 28539702 28539919 -214124434 - MIR SINE MIR -14 248 34 563 234 72 36 chr1 28539927 28540094 -214124259 - L2 LINE L2 -19 3294 3122 1559 133 162 44 chr1 28540102 28540441 -214123912 - MLT1B LTR MaLR -2 388 10 288 304 179 5 chr1 28540479 28540663 -214123690 - L2 LINE L2 -280 3033 2818 359 308 36 0 chr1 28540740 28540882 -214123471 - MIR3 SINE MIR -37 171 20 2248 119 10 6 chr1 28541356 28541667 -214122686 + AluSx SINE Alu 1 312 0 296 282 38 38 chr1 28541669 28541800 -214122553 - MIR SINE MIR -129 133 3 371 183 0 0 chr1 28541840 28541900 -214122453 + MIR SINE MIR 90 149 -59 292 291 55 9 chr1 28542031 28542141 -214122212 - MIR SINE MIR -89 173 59 254 250 102 41 chr1 28542277 28542473 -214121880 + L2 LINE L2 2770 2977 -337 551 309 178 18 chr1 28542660 28543042 -214121311 + L2 LINE L2 2871 3313 0 608 216 6 31 chr1 28544178 28544340 -214120013 + MLT1K LTR MaLR 322 479 -109 365 197 171 60 chr1 28544657 28544774 -214119579 - MIR SINE MIR -92 170 41 773 272 104 21 chr1 28544905 28545280 -214119073 + L2 LINE L2 2002 2407 -907 423 213 46 2 chr1 28545488 28545615 -214118738 - L1MC3 LINE L1 0 7995 7679 2450 81 0 0 chr1 28545624 28545922 -214118431 - AluY SINE Alu -13 298 1 276 253 124 59 chr1 28545986 28546172 -214118181 + MER102a DNA MER1_type 116 313 -17 338 231 0 0 chr1 28546254 28546319 -214118034 - L2 LINE L2 -1 3271 3207 607 284 138 0 chr1 28546808 28547026 -214117327 - MIR SINE MIR -4 258 11 8499 48 11 0 chr1 28547049 28548007 -214116346 + LTR5 LTR ERVK 1 969 0 2715 92 2 20 chr1 28548076 28548479 -214115874 + L1MA2 LINE L1 5909 6304 0 187 378 14 0 chr1 28548493 28548567 -214115786 + MIR SINE MIR 186 260 -2 288 220 156 28 chr1 28549173 28549282 -214115071 + MIR3 SINE MIR 46 168 -40 181 259 74 0 chr1 28549544 28549598 -214114755 - MIR SINE MIR -77 185 128 289 325 24 16 chr1 28550372 28550495 -214113858 + MIR SINE MIR 21 144 -64 891 153 0 0 chr1 28550566 28550697 -214113656 - FLAM_C SINE Alu -2 131 1 344 340 93 34 chr1 28550765 28551056 -214113297 - L2 LINE L2 0 3313 3006 481 261 0 9 chr1 28551086 28551201 -214113152 + MER81 DNA DNA 1 114 0 974 221 42 5 chr1 28551315 28551528 -214112825 - MIR SINE MIR -29 233 13 243 270 20 125 chr1 28551552 28551752 -214112601 - MIR SINE MIR 0 262 84 797 147 0 33 chr1 28552900 28553084 -214111269 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 640 89 20 0 chr1 28553082 28553183 -214111170 + (TC)n Simple_repeat Simple_repeat 2 104 0 * 201 162 27 0 chr1 28553582 28553619 -214110734 + MIR3 SINE MIR 168 205 -3 244 259 84 36 chr1 28554056 28554222 -214110131 - L2 LINE L2 -304 3009 2836 1874 265 80 32 chr1 28554819 28555472 -214108881 - MER115 DNA AcHobo -5 688 5 1815 151 20 94 chr1 28555982 28556386 -214107967 - MLT1A2 LTR MaLR 0 374 1 242 143 0 0 chr1 28556563 28556605 -214107748 + Alu SINE Alu 260 301 -1 670 325 21 4 chr1 28556868 28557111 -214107242 - MIR SINE MIR -14 248 2 466 213 110 76 chr1 28557908 28558171 -214106182 - MLT1H LTR MaLR -197 352 81 252 318 84 19 chr1 28558210 28558317 -214106036 + MIR3 SINE MIR 88 201 -7 478 320 115 8 chr1 28559263 28559497 -214104856 - MIR SINE MIR -1 261 3 4274 139 27 14 chr1 28560382 28561025 -214103328 - L1MA4 LINE L1 -159 6323 5667 1658 107 5 0 chr1 28561025 28561240 -214103113 - AluSg/x SINE Alu -18 294 79 4274 139 27 14 chr1 28561240 28561367 -214102986 - L1MA4 LINE L1 -815 5667 5543 627 126 19 0 chr1 28561367 28561470 -214102883 - AluYb8 SINE Alu 0 318 214 15026 174 28 26 chr1 28561473 28563793 -214100560 - L1MA4 LINE L1 -781 5547 3234 3688 54 2 5 chr1 28563793 28564238 -214100115 - MLT2A1 LTR ERVL 0 444 1 15026 174 28 26 chr1 28564238 28564890 -214099463 - L1MA4 LINE L1 -3094 3234 2585 2071 109 43 23 chr1 28564890 28565193 -214099160 - AluSg SINE Alu -1 309 1 15026 174 28 26 chr1 28565193 28565342 -214099011 - L1MA4 LINE L1 -3743 2585 2438 2347 109 0 3 chr1 28565342 28565646 -214098707 - AluSx SINE Alu -9 303 1 15026 174 28 26 chr1 28565646 28568054 -214096299 - L1MA4 LINE L1 -3890 2438 2 289 337 107 18 chr1 28568137 28568306 -214096047 - MER5A DNA MER1_type -4 185 2 556 289 108 54 chr1 28568366 28568774 -214095579 + MLT1J2 LTR MaLR 20 449 -1 1094 161 0 0 chr1 28568863 28569024 -214095329 + AluSp SINE Alu 136 296 -17 1760 180 0 47 chr1 28569071 28569388 -214094965 - AluJb SINE Alu -10 302 1 22 70 0 0 chr1 28569641 28569684 -214094669 + AT_rich Low_complexity Low_complexity 1 43 0 452 269 6 56 chr1 28570099 28570259 -214094094 + MIR3 SINE MIR 37 188 -20 473 320 87 10 chr1 28570511 28570717 -214093636 - MIR SINE MIR -6 256 35 504 237 167 32 chr1 28571927 28572113 -214092240 + MIR SINE MIR 20 230 -32 251 309 141 35 chr1 28572567 28572823 -214091530 - L2 LINE L2 -2 3270 2988 627 181 136 4 chr1 28572857 28573056 -214091297 - MLT1H1 LTR MaLR 0 555 292 294 277 24 0 chr1 28573093 28573176 -214091177 - MLT1H1 LTR MaLR -304 286 202 3236 145 23 33 chr1 28573178 28573358 -214090995 + MER49 LTR ERV1 1 181 -742 2390 84 0 7 chr1 28573358 28573657 -214090696 - AluY SINE Alu -14 297 1 3236 145 23 33 chr1 28573657 28574049 -214090304 + MER49 LTR ERV1 181 567 -356 1148 212 9 0 chr1 28574045 28574267 -214090086 + MER49 LTR ERV1 686 909 -14 * 1890 154 7 10 chr1 28574267 28574560 -214089793 - AluJo SINE Alu -16 296 5 640 292 39 0 chr1 28574610 28574788 -214089565 - MLT1H1 LTR MaLR -370 185 1 256 331 24 16 chr1 28574951 28575078 -214089275 - L2 LINE L2 -212 3060 2933 207 281 0 24 chr1 28575379 28575461 -214088892 - L2 LINE L2 -685 2629 2550 661 248 105 34 chr1 28575477 28575715 -214088638 - MIR SINE MIR -2 260 6 277 247 124 0 chr1 28576059 28576148 -214088205 - MIR SINE MIR -88 120 21 653 250 112 27 chr1 28576156 28576231 -214088122 + MIR SINE MIR 19 86 -176 2540 97 8 0 chr1 28576231 28576602 -214087751 - THE1C LTR MaLR -1 374 1 653 250 112 27 chr1 28576602 28576750 -214087603 + MIR SINE MIR 86 261 -1 907 287 46 4 chr1 28576778 28577015 -214087338 + MIR SINE MIR 6 252 -10 578 230 112 1 chr1 28577341 28577536 -214086817 - MIR SINE MIR -20 242 29 329 244 130 9 chr1 28577807 28577922 -214086431 + MIR3 SINE MIR 40 168 -40 324 233 135 61 chr1 28577948 28578111 -214086242 - MIR SINE MIR -13 249 75 258 327 64 32 chr1 28578648 28578868 -214085485 + MIR SINE MIR 14 240 -22 230 325 36 12 chr1 28579068 28579151 -214085202 - MIR SINE MIR -70 192 108 458 275 56 0 chr1 28579317 28579477 -214084876 - MIR SINE MIR -80 182 14 216 259 27 122 chr1 28580479 28580577 -214083776 + L2 LINE L2 3140 3221 -51 477 110 0 0 chr1 28580577 28580650 -214083703 + (TGAA)n Simple_repeat Simple_repeat 4 76 0 216 259 27 122 chr1 28580650 28580698 -214083655 + L2 LINE L2 3221 3272 0 585 255 62 46 chr1 28580713 28580972 -214083381 + L3 LINE CR1 1251 1513 -64 260 320 8 31 chr1 28581292 28581420 -214082933 + MIR SINE MIR 24 148 -60 351 286 9 45 chr1 28581460 28581572 -214082781 + MIR SINE MIR 80 187 -75 416 135 14 0 chr1 28581623 28581697 -214082656 + CT-rich Low_complexity Low_complexity 3 77 0 2213 108 26 10 chr1 28581743 28582048 -214082305 + AluSg SINE Alu 1 310 0 252 86 0 0 chr1 28582952 28582987 -214081366 + (TC)n Simple_repeat Simple_repeat 2 36 0 365 0 22 0 chr1 28582988 28583033 -214081320 + (CA)n Simple_repeat Simple_repeat 2 47 0 210 312 107 20 chr1 28583426 28583583 -214080770 - MIR SINE MIR -68 140 20 541 240 112 52 chr1 28584230 28584463 -214079890 + MIR SINE MIR 16 262 0 493 260 97 7 chr1 28584825 28584979 -214079374 - MIR3 SINE MIR -28 180 13 272 271 0 0 chr1 28585986 28586056 -214078297 + (TAA)n Simple_repeat Simple_repeat 2 71 0 353 253 58 0 chr1 28586116 28586203 -214078150 - MIR SINE MIR -44 218 127 484 246 84 134 chr1 28586228 28586499 -214077854 + LTR41 LTR ERVL 435 685 -88 889 187 6 6 chr1 28586499 28586665 -214077688 - FRAM SINE Alu 0 166 1 484 246 84 134 chr1 28586665 28586750 -214077603 + LTR41 LTR ERVL 685 773 0 347 175 42 31 chr1 28586804 28586897 -214077456 - MER58 DNA MER1_type -109 106 1 2092 119 35 91 chr1 28586913 28587341 -214077012 + MSTA LTR MaLR 1 404 -24 2691 129 2 0 chr1 28587352 28587763 -214076590 + MSTA-int LTR MaLR 1 412 -1239 12667 36 2 0 chr1 28587776 28590124 -214074229 - L1PA5 LINE L1 -11 6143 3793 384 256 12 101 chr1 28590271 28590439 -214073914 - MLT1J LTR MaLR -203 308 156 233 304 36 36 chr1 28590700 28590838 -214073515 - L1ME4a LINE L1 -28 6093 5956 671 325 26 18 chr1 28590844 28591185 -214073168 - L1ME4a LINE L1 -213 5908 5565 334 150 0 33 chr1 28592192 28592276 -214072077 - AluJ/FRAM SINE Alu 0 308 227 540 202 40 16 chr1 28592298 28592422 -214071931 + MLT1E LTR MaLR 46 172 -421 974 278 92 27 chr1 28592535 28592906 -214071447 + MLT1E LTR MaLR 199 593 0 3920 175 37 55 chr1 28592967 28594158 -214070195 + L1MB8 LINE L1 4957 6145 -33 636 207 173 74 chr1 28594158 28594429 -214069924 + MLT1K LTR MaLR 290 587 -1 377 317 44 17 chr1 28594462 28594642 -214069711 - MIR SINE MIR -55 207 23 1196 205 52 52 chr1 28595096 28595482 -214068871 + MLT2D LTR ERVL 29 414 0 247 179 330 9 chr1 28595561 28595673 -214068680 + LTR16A1 LTR ERVL 305 452 -5 472 365 31 7 chr1 28595763 28596056 -214068297 + HERV16 LTR ERVL 117 416 -4580 966 336 67 28 chr1 28596086 28596829 -214067524 + HERV16 LTR ERVL 461 1232 -3764 2300 226 57 16 chr1 28597041 28597896 -214066457 + L1ME1 LINE L1 5145 5981 -185 220 316 26 26 chr1 28598788 28598902 -214065451 - MIR SINE MIR -20 242 129 262 219 151 42 chr1 28599392 28599511 -214064842 - MIR SINE MIR -117 145 14 289 235 0 15 chr1 28599667 28599735 -214064618 - MER96 DNA MER1_type? -26 149 83 255 311 123 9 chr1 28600330 28600436 -214063917 - MIR3 SINE MIR -9 199 82 187 273 182 23 chr1 28601091 28601179 -214063174 + MIR SINE MIR 12 113 -149 204 225 0 0 chr1 28601764 28601804 -214062549 + (TG)n Simple_repeat Simple_repeat 2 41 0 193 326 31 20 chr1 28603149 28603247 -214061106 - MIR3 SINE MIR -28 180 82 223 91 0 0 chr1 28603459 28603492 -214060861 - L2 LINE L2 -223 3049 3017 3476 104 5 61 chr1 28603955 28604513 -214059840 + MER1A DNA MER1_type 1 527 0 423 282 0 69 chr1 28604678 28604809 -214059544 + MIR SINE MIR 21 142 -120 297 244 51 114 chr1 28604886 28605062 -214059291 - MIR SINE MIR -4 258 94 673 265 77 4 chr1 28605067 28605301 -214059052 + L1MEc LINE L1 134 384 -6012 895 130 0 8 chr1 28605322 28605453 -214058900 + FRAM SINE Alu 35 164 -12 2816 268 69 3 chr1 28605464 28606383 -214057970 + L1MEc LINE L1 398 1376 -5020 2418 175 73 9 chr1 28606401 28606961 -214057392 + L1M4 LINE L1 4615 5210 -936 860 256 52 0 chr1 28607142 28607372 -214056981 - MIR SINE MIR 0 262 21 255 329 54 48 chr1 28607415 28607582 -214056771 - MIR SINE MIR -1 261 94 201 302 0 0 chr1 28608814 28608867 -214055486 + MIR3 SINE MIR 144 196 -12 438 241 48 8 chr1 28609074 28609258 -214055095 + MIR SINE MIR 5 192 -68 298 246 86 13 chr1 28609653 28609763 -214054590 + MIR SINE MIR 61 175 -78 273 248 8 94 chr1 28609788 28609905 -214054448 - L2 LINE L2 -6 3307 3201 259 278 33 0 chr1 28610945 28611035 -214053318 + MIR SINE MIR 100 192 -70 412 324 152 5 chr1 28611382 28611586 -214052767 - MIR SINE MIR -9 253 20 193 224 69 0 chr1 28611735 28611793 -214052560 + MIR SINE MIR 84 145 -63 486 363 42 29 chr1 28611840 28612080 -214052273 + MIR SINE MIR 8 250 -12 495 273 43 0 chr1 28612665 28612804 -214051549 - MIR3 SINE MIR -59 149 5 315 332 21 10 chr1 28612900 28613093 -214051260 - L2 LINE L2 -526 2788 2594 384 260 123 26 chr1 28613147 28613301 -214051052 - MIR SINE MIR -60 202 34 1090 245 95 25 chr1 28613642 28614010 -214050343 - MLT1I LTR MaLR 0 409 16 1131 279 82 43 chr1 28614020 28614978 -214049375 + L2 LINE L2 2309 3300 -13 207 0 0 0 chr1 28614978 28615001 -214049352 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 315 138 62 0 chr1 28615851 28615916 -214048437 - L1P LINE L1 -4215 1931 1863 * 4697 112 3 3 chr1 28615912 28616593 -214047760 - L1P LINE L1 -5465 681 1 2295 201 92 53 chr1 28616595 28617268 -214047085 + MST-int LTR MaLR 400 1098 -553 2681 302 73 46 chr1 28617268 28618581 -214045772 + MERVL LTR ERVL 1916 3264 -2221 493 265 61 44 chr1 28618681 28618862 -214045491 + MIR SINE MIR 2 185 -77 574 290 32 14 chr1 28618886 28619103 -214045250 - MIR SINE MIR -37 225 5 326 265 53 68 chr1 28619201 28619333 -214045020 + MER5A DNA MER1_type 57 186 -3 206 372 18 35 chr1 28619395 28619508 -214044845 + MIR SINE MIR 43 153 -55 212 237 0 0 chr1 28619553 28619591 -214044762 + MIR SINE MIR 50 87 -175 2464 86 0 0 chr1 28619593 28619894 -214044459 - AluY SINE Alu -10 301 1 369 269 56 0 chr1 28619895 28620003 -214044350 + MIR SINE MIR 72 185 -77 348 333 62 15 chr1 28620050 28620245 -214044108 + MIR SINE MIR 15 218 -44 21 36 0 0 chr1 28620262 28620290 -214044063 + AT_rich Low_complexity Low_complexity 1 28 0 305 353 69 6 chr1 28621294 28621467 -214042886 + MIR SINE MIR 51 234 -28 247 279 19 67 chr1 28621841 28621945 -214042408 - HAL1b LINE L1 -54 1294 1196 505 203 16 24 chr1 28622676 28622799 -214041554 - MIR SINE MIR -113 149 28 2308 69 39 20 chr1 28623249 28623554 -214040799 + AluY SINE Alu 1 311 0 439 251 69 35 chr1 28623747 28623978 -214040375 + L1ME4a LINE L1 5830 6068 -53 537 178 212 14 chr1 28624021 28624167 -214040186 - MIR SINE MIR -44 218 44 380 323 36 6 chr1 28624986 28625153 -214039200 - MIR SINE MIR -70 192 21 487 306 103 25 chr1 28625264 28625545 -214038808 + L2 LINE L2 3010 3312 -1 362 260 96 21 chr1 28625570 28625717 -214038636 - MIR SINE MIR -62 146 42 346 283 80 0 chr1 28626567 28626680 -214037673 - MIR SINE MIR -63 145 24 696 268 78 42 chr1 28627450 28627756 -214036597 - L2 LINE L2 -2 3311 2995 520 330 30 13 chr1 28627848 28628081 -214036272 + L2 LINE L2 2584 2820 -494 312 375 76 11 chr1 28628084 28628348 -214036005 + L2 LINE L2 2985 3265 -7 489 124 26 88 chr1 28629524 28629574 -214034779 - MSTB2 LTR MaLR -351 106 54 2388 94 0 7 chr1 28629574 28629881 -214034472 - AluY SINE Alu -6 305 1 489 124 26 88 chr1 28629881 28629943 -214034410 - MSTB2 LTR MaLR -403 54 1 309 230 40 0 chr1 28630456 28630530 -214033823 + MIR SINE MIR 42 118 -90 394 342 19 19 chr1 28630988 28631143 -214033210 + L3 LINE CR1 1281 1435 -142 209 378 20 0 chr1 28631875 28631973 -214032380 + MIR SINE MIR 43 142 -66 441 322 17 43 chr1 28632122 28632355 -214031998 + L2 LINE L2 3042 3268 -4 1800 175 34 11 chr1 28632464 28632842 -214031511 + MLT1B LTR MaLR 4 390 0 656 265 44 5 chr1 28633090 28633294 -214031059 - MIR SINE MIR -48 214 3 377 309 24 0 chr1 28633530 28633653 -214030700 + L2 LINE L2 3134 3259 -13 203 200 154 0 chr1 28634089 28634154 -214030199 - MIR SINE MIR -72 136 62 340 339 58 26 chr1 28634451 28634764 -214029589 - L2 LINE L2 0 3313 2991 232 292 14 0 chr1 28634784 28634856 -214029497 - MER94 DNA DNA -58 76 4 225 358 12 0 chr1 28634866 28634947 -214029406 + MIR SINE MIR 181 262 0 278 203 14 14 chr1 28635701 28635770 -214028583 + L2 LINE L2 3214 3282 -31 364 276 126 45 chr1 28635909 28636108 -214028245 - MIR SINE MIR -21 241 27 439 243 92 32 chr1 28636180 28636365 -214027988 - MLT1G LTR MaLR -7 583 388 438 273 98 0 chr1 28637456 28637599 -214026754 - MIR SINE MIR 0 262 106 1752 123 119 0 chr1 28638386 28638655 -214025698 + AluSx SINE Alu 1 301 -11 188 67 33 0 chr1 28638795 28638825 -214025528 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 978 188 0 70 chr1 28638847 28639060 -214025293 - LTR47B LTR ERVL 0 443 246 529 282 66 42 chr1 28639065 28639352 -214025001 - LTR47B LTR ERVL -149 294 1 2392 81 0 0 chr1 28639420 28639727 -214024626 - AluSx SINE Alu 0 307 1 280 288 65 7 chr1 28640217 28640356 -214023997 + LTR16C LTR ERVL 191 337 -154 204 234 221 48 chr1 28640390 28640535 -214023818 + MIR SINE MIR 73 242 -20 665 281 158 42 chr1 28640566 28641065 -214023288 + MLT1K LTR MaLR 16 572 -16 309 267 58 0 chr1 28641122 28641208 -214023145 + MIR3 SINE MIR 112 202 -6 248 180 79 79 chr1 28641560 28641649 -214022704 - MIR SINE MIR -77 131 43 247 328 26 45 chr1 28642374 28642528 -214021825 + MIR SINE MIR 56 202 -60 298 318 39 16 chr1 28642637 28642766 -214021587 + MIR SINE MIR 79 210 -52 384 314 73 20 chr1 28643315 28643560 -214020793 + L2 LINE L2 2618 2875 -439 236 286 87 48 chr1 28643695 28643821 -214020532 + L2 LINE L2 3142 3272 0 2371 100 3 0 chr1 28644019 28644319 -214020034 - AluSx SINE Alu -11 301 1 431 189 32 11 chr1 28644449 28644544 -214019809 + MIR SINE MIR 20 116 -146 1291 270 128 63 chr1 28645032 28645564 -214018789 - HAL1b LINE L1 -7 1341 845 2005 137 23 29 chr1 28645564 28645871 -214018482 - AluJo SINE Alu -6 306 2 1291 270 128 63 chr1 28645871 28646514 -214017839 - HAL1b LINE L1 -503 845 89 438 263 114 34 chr1 28647771 28647946 -214016407 - MER117 DNA MER1_type -6 191 3 379 299 90 6 chr1 28647972 28648139 -214016214 + MIR SINE MIR 22 202 -60 1402 258 26 54 chr1 28648139 28648195 -214016158 - MLT1H LTR MaLR -10 539 483 1994 132 0 21 chr1 28648195 28648520 -214015833 + AluSx SINE Alu 1 319 0 1402 258 26 54 chr1 28648520 28648959 -214015394 - MLT1H LTR MaLR -66 483 57 1107 153 41 29 chr1 28648964 28649206 -214015147 - MSTB1 LTR MaLR -4 428 184 438 169 52 0 chr1 28649196 28649273 -214015080 - MSTB1 LTR MaLR -376 81 1 * 375 143 0 48 chr1 28649273 28649357 -214014996 - MLT1H-int LTR MaLR 0 1735 1656 1572 176 115 40 chr1 28649501 28649926 -214014427 - MSTB2 LTR MaLR 0 457 1 365 274 71 0 chr1 28650512 28650625 -214013728 - L2 LINE L2 0 3313 3193 310 229 2 77 chr1 28650635 28650761 -214013592 - MLT1J2 LTR MaLR 0 450 370 407 201 7 89 chr1 28650803 28650845 -214013508 - MLT1J1 LTR MaLR -227 182 138 1930 201 57 5 chr1 28650845 28651249 -214013104 + MSTB LTR MaLR 2 426 0 407 201 7 89 chr1 28651249 28651344 -214013009 - MLT1J1 LTR MaLR -271 138 56 247 316 25 0 chr1 28652111 28652190 -214012163 - MIR SINE MIR -106 156 76 693 284 109 31 chr1 28652366 28652715 -214011638 - MLT1I LTR MaLR 0 409 34 191 236 127 0 chr1 28652974 28653029 -214011324 - MIR SINE MIR -70 192 131 928 268 80 27 chr1 28653039 28653557 -214010796 - L2 LINE L2 -13 3300 2756 325 311 115 0 chr1 28653602 28653750 -214010603 + MIR SINE MIR 92 256 -6 952 278 196 11 chr1 28654528 28654910 -214009443 + MLT1K LTR MaLR 136 588 0 203 276 35 35 chr1 28655747 28655834 -214008519 + L2 LINE L2 3186 3272 0 504 216 17 26 chr1 28655951 28656067 -214008286 - MER94 DNA DNA 0 134 20 316 319 0 0 chr1 28657300 28657413 -214006940 + L1MDb LINE L1 783 895 -5514 * 833 102 0 90 chr1 28657411 28657577 -214006776 + L1 LINE L1 1092 1242 -5165 * 3777 207 58 14 chr1 28657570 28658735 -214005618 + L1 LINE L1 2726 4045 -2361 218 275 217 8 chr1 28708843 28708963 -213955390 - L2 LINE L2 -803 2511 2367 302 288 92 49 chr1 28709095 28709258 -213955095 - MIR SINE MIR -3 259 90 2023 108 0 17 chr1 28709362 28709658 -213954695 - AluSg SINE Alu -13 297 7 338 198 66 22 chr1 28709691 28709782 -213954571 - MER103 DNA DNA -19 147 53 682 92 0 0 chr1 28710171 28710258 -213954095 + FRAM SINE Alu 59 145 -31 255 238 65 95 chr1 28710367 28710535 -213953818 - MIR SINE MIR -44 218 56 282 303 45 58 chr1 28710571 28710630 -213953723 - MLT1K LTR MaLR -15 573 515 2194 107 0 0 chr1 28710630 28710928 -213953425 + AluSx SINE Alu 1 298 -14 2222 102 3 0 chr1 28710931 28711234 -213953119 + AluSx SINE Alu 1 304 -8 282 303 45 58 chr1 28711234 28711325 -213953028 - MLT1K LTR MaLR -75 513 421 532 225 67 0 chr1 28711371 28711491 -213952862 - MIR SINE MIR -6 256 129 2095 91 0 0 chr1 28711611 28711886 -213952467 - AluSx SINE Alu -37 275 1 421 317 62 65 chr1 28712183 28712505 -213951848 - L2 LINE L2 -51 3221 2901 246 263 0 0 chr1 28713220 28713276 -213951077 - MIR SINE MIR -59 149 94 403 301 206 14 chr1 28713276 28713495 -213950858 + MIR SINE MIR 1 261 -1 371 83 0 0 chr1 28713790 28713838 -213950515 - Alu SINE Alu -252 48 1 1582 163 71 0 chr1 28714705 28714987 -213949366 + AluJb SINE Alu 3 304 -8 1728 132 64 0 chr1 28714989 28715285 -213949068 + AluSx SINE Alu 1 313 0 180 226 97 16 chr1 28715458 28715520 -213948833 + MER5B DNA MER1_type 65 131 -47 317 311 34 68 chr1 28715731 28715908 -213948445 + MIR3 SINE MIR 10 180 -28 1283 105 0 0 chr1 28716416 28716588 -213947765 + AluSg SINE Alu 1 172 -138 581 260 125 10 chr1 28716643 28716851 -213947502 - MIR SINE MIR 0 262 31 821 181 104 14 chr1 28717474 28717714 -213946639 - MER46C DNA MER2_type -1 337 17 222 303 26 26 chr1 28717796 28717872 -213946481 + L2 LINE L2 3127 3202 -70 1971 128 0 36 chr1 28717934 28718240 -213946113 + AluSx SINE Alu 1 295 -17 458 277 209 27 chr1 28718476 28718696 -213945657 + MIR SINE MIR 2 261 -1 979 202 18 0 chr1 28718883 28719051 -213945302 + FAM SINE Alu 4 174 -1 213 257 210 37 chr1 28719403 28719617 -213944736 - L2 LINE L2 -803 2511 2261 305 282 92 49 chr1 28719655 28719818 -213944535 - MIR SINE MIR -3 259 90 2213 93 0 17 chr1 28719921 28720223 -213944130 - AluSg SINE Alu -13 297 1 434 275 43 7 chr1 28720239 28720377 -213943976 - MER103 DNA DNA -8 158 16 263 287 74 28 chr1 28722520 28722628 -213941725 - MIR3 SINE MIR -48 160 48 22 0 0 0 chr1 28723034 28723056 -213941297 + AT_rich Low_complexity Low_complexity 1 22 0 4352 138 95 34 chr1 28723056 28723878 -213940475 + MER21A LTR ERV1 60 931 0 2164 128 0 0 chr1 28724041 28724353 -213940000 + AluSx SINE Alu 1 312 0 1923 152 3 3 chr1 28725337 28725640 -213938713 - AluSx SINE Alu -9 303 1 386 234 47 9 chr1 28726097 28726204 -213938149 - MIR SINE MIR -101 161 51 291 312 143 9 chr1 28726338 28726762 -213937591 - L2 LINE L2 -62 3210 2724 234 156 0 0 chr1 28727411 28727456 -213936897 + (TG)n Simple_repeat Simple_repeat 1 45 0 438 269 77 0 chr1 28727519 28727649 -213936704 + MIR3 SINE MIR 34 173 -35 2093 125 0 0 chr1 28729699 28729994 -213934359 + AluSx SINE Alu 1 295 -17 886 224 35 39 chr1 28731757 28732016 -213932337 - MIR SINE MIR -1 261 4 305 301 85 91 chr1 28732593 28732862 -213931491 - L2 LINE L2 -377 2937 2669 2144 107 0 0 chr1 28732862 28733160 -213931193 + AluY SINE Alu 1 298 -13 305 301 85 91 chr1 28733160 28733242 -213931111 - L2 LINE L2 -645 2669 2588 950 195 65 20 chr1 28733375 28733575 -213930778 + MER3 DNA MER1_type 1 209 0 2302 94 0 0 chr1 28733867 28734166 -213930187 + AluSx SINE Alu 1 299 -13 2272 110 0 0 chr1 28734166 28734476 -213929877 + AluSg SINE Alu 1 310 0 543 352 41 41 chr1 28735635 28736073 -213928280 - L2 LINE L2 0 3272 2835 226 324 0 0 chr1 28737114 28737188 -213927165 - MIR SINE MIR -106 156 83 294 294 17 8 chr1 28737775 28737894 -213926459 + (CA)n Simple_repeat Simple_repeat 2 121 0 239 147 103 44 chr1 28738122 28738258 -213926095 + (CCCGG)n Simple_repeat Simple_repeat 3 146 0 27 49 0 0 chr1 28738264 28738305 -213926048 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 28738370 28738391 -213925962 + GC_rich Low_complexity Low_complexity 1 21 0 201 182 0 0 chr1 28738472 28738505 -213925848 + (CA)n Simple_repeat Simple_repeat 1 33 0 29 47 0 0 chr1 28739422 28739465 -213924888 + GC_rich Low_complexity Low_complexity 1 43 0 186 71 0 0 chr1 28739502 28739530 -213924823 + (CGGAG)n Simple_repeat Simple_repeat 1 28 0 504 294 73 25 chr1 28739847 28740092 -213924261 - L3 LINE CR1 -57 1520 1264 196 226 95 48 chr1 28740121 28740205 -213924148 - MIR SINE MIR -26 236 149 429 191 59 66 chr1 28740314 28740466 -213923887 - L2 LINE L2 -4 3309 3159 250 272 81 66 chr1 28740604 28740688 -213923665 + L2 LINE L2 3176 3257 -56 234 0 0 0 chr1 28740688 28740714 -213923639 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2128 99 0 0 chr1 28740716 28740998 -213923355 - AluSq SINE Alu -31 282 1 250 272 81 66 chr1 28740998 28741046 -213923307 + L2 LINE L2 3257 3313 0 * 848 296 63 32 chr1 28741039 28741554 -213922799 - L2 LINE L2 -74 3239 2720 489 221 0 46 chr1 28742129 28742260 -213922093 - MIR SINE MIR -118 144 20 2112 76 50 30 chr1 28742372 28742674 -213921679 + AluSq SINE Alu 1 308 -5 217 303 40 0 chr1 28742807 28742883 -213921470 - L2 LINE L2 -8 3305 3227 288 265 0 24 chr1 28743601 28743684 -213920669 - MIR SINE MIR 0 262 182 732 267 47 43 chr1 28743684 28743942 -213920411 - MIR SINE MIR -1 261 3 260 333 17 26 chr1 28744038 28744155 -213920198 + MER5A DNA MER1_type 8 123 -66 * 382 248 48 19 chr1 28744064 28744169 -213920184 - MER5A DNA MER1_type -22 167 60 183 80 0 0 chr1 28744226 28744251 -213920102 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 591 244 103 1 chr1 28744519 28744698 -213919655 - MIR SINE MIR -62 146 6 799 238 72 8 chr1 28745527 28745762 -213918591 - MIR SINE MIR -2 260 11 322 297 0 30 chr1 28745853 28745954 -213918399 - MIR SINE MIR -95 113 16 198 280 11 65 chr1 28746028 28746121 -213918232 + MIR SINE MIR 54 141 -121 380 235 130 23 chr1 28746238 28746372 -213917981 + MIR SINE MIR 8 151 -67 2235 77 3 7 chr1 28746550 28746848 -213917505 + AluSx SINE Alu 1 297 -15 1583 126 134 4 chr1 28747440 28747701 -213916652 + AluSg1 SINE Alu 3 297 -12 770 163 0 24 chr1 28747801 28747958 -213916395 - FLAM_A SINE Alu 0 133 1 431 214 48 55 chr1 28747961 28748106 -213916247 - MER5B DNA MER1_type -34 144 1 2185 103 3 16 chr1 28748790 28749102 -213915251 + AluSx SINE Alu 1 308 -4 440 329 35 12 chr1 28749202 28749372 -213914981 - MIR SINE MIR -12 250 77 26 30 0 0 chr1 28749452 28749485 -213914868 + AT_rich Low_complexity Low_complexity 1 33 0 533 169 0 0 chr1 28749485 28749568 -213914785 - AluJb SINE Alu -194 118 36 249 277 201 31 chr1 28750429 28750588 -213913765 - MIR SINE MIR -57 205 20 2273 93 3 3 chr1 28750873 28751185 -213913168 - AluSq SINE Alu -1 312 1 1914 129 28 0 chr1 28751185 28751471 -213912882 - AluSx SINE Alu -13 299 6 499 333 117 35 chr1 28752030 28752771 -213911582 - L2 LINE L2 -33 3239 2443 2009 97 32 26 chr1 28752833 28753141 -213911212 - AluSx SINE Alu -2 310 1 290 349 143 0 chr1 28753222 28753348 -213911005 - L2 LINE L2 -8 3305 3162 293 257 159 18 chr1 28753537 28753650 -213910703 + MIR SINE MIR 17 145 -63 1075 169 48 87 chr1 28753743 28753909 -213910444 - MER58A DNA MER1_type -2196 224 68 1358 187 90 4 chr1 28753909 28754187 -213910166 + AluJb SINE Alu 1 302 -10 1075 169 48 87 chr1 28754187 28754251 -213910102 - MER58A DNA MER1_type -2352 68 3 499 279 96 24 chr1 28754348 28754556 -213909797 - MIR SINE MIR -6 256 34 2236 87 0 7 chr1 28754964 28755262 -213909091 + AluY SINE Alu 1 296 -15 216 375 57 0 chr1 28755505 28755593 -213908760 - MIR SINE MIR -157 105 13 588 305 75 7 chr1 28755623 28755905 -213908448 + L2 LINE L2 2483 2783 -531 650 205 79 51 chr1 28755935 28756150 -213908203 - MER112 DNA MER1_type -12 248 28 206 312 283 0 chr1 28756276 28756523 -213907830 + L2 LINE L2 2921 3237 -76 460 281 98 7 chr1 28756563 28756716 -213907637 + MIR3 SINE MIR 35 201 -7 2314 71 3 0 chr1 28756983 28757277 -213907076 + AluSq SINE Alu 1 295 -18 1604 168 23 29 chr1 28757502 28757812 -213906541 - AluJo SINE Alu 0 312 5 1878 160 7 0 chr1 28757855 28758162 -213906191 + AluSx SINE Alu 1 309 -3 251 203 253 0 chr1 28758764 28758843 -213905510 - L2 LINE L2 0 3272 3174 292 284 158 8 chr1 28758983 28759110 -213905243 + MIR SINE MIR 7 152 -110 343 280 21 0 chr1 28759189 28759282 -213905071 - MIR SINE MIR -108 154 60 469 255 159 6 chr1 28759282 28759439 -213904914 - LTR16C LTR ERVL 0 491 311 1954 93 26 0 chr1 28759445 28759715 -213904638 - AluSg SINE Alu -23 287 11 680 221 54 45 chr1 28760342 28760564 -213903789 + MER112 DNA MER1_type 22 245 -15 1068 58 0 15 chr1 28760728 28760865 -213903488 - AluSg/x SINE Alu -19 291 157 281 336 44 29 chr1 28760865 28761002 -213903351 - MIR SINE MIR -122 140 2 241 396 22 22 chr1 28761290 28761429 -213902924 - L2 LINE L2 -217 3055 2917 290 271 104 10 chr1 28762263 28762359 -213901994 - MIR SINE MIR -97 165 61 291 274 123 45 chr1 28763377 28763556 -213900797 - MIR SINE MIR -54 208 16 1706 182 3 25 chr1 28763864 28764182 -213900171 + AluJo SINE Alu 1 311 -1 862 128 23 0 chr1 28764899 28765032 -213899321 + AluJo SINE Alu 1 136 -176 1793 149 45 7 chr1 28765052 28765340 -213899013 + AluSx SINE Alu 1 299 -13 2338 70 0 0 chr1 28765433 28765731 -213898622 + AluY SINE Alu 1 298 -13 272 313 128 39 chr1 28765928 28766043 -213898310 - MIR SINE MIR -19 243 105 2144 123 0 0 chr1 28766043 28766351 -213898002 + AluSx SINE Alu 1 308 -4 272 313 128 39 chr1 28766351 28766414 -213897939 - MIR SINE MIR -157 105 49 496 266 5 58 chr1 28766498 28766675 -213897678 + MIR SINE MIR 14 182 -80 2228 154 3 3 chr1 28766675 28767012 -213897341 + MER1B DNA MER1_type 1 337 0 412 283 0 0 chr1 28767085 28767177 -213897176 + MIR SINE MIR 166 257 -5 184 260 50 50 chr1 28767654 28767754 -213896599 - MIR SINE MIR -127 135 36 199 256 0 0 chr1 28767892 28767931 -213896422 - MER5A DNA MER1_type -83 106 68 1581 190 20 16 chr1 28767932 28768237 -213896116 - AluJb SINE Alu -5 307 2 1748 147 7 10 chr1 28768262 28768555 -213895798 - AluJo SINE Alu -20 292 1 222 292 124 0 chr1 28769192 28769281 -213895072 - L2 LINE L2 -48 3224 3125 * 445 139 36 158 chr1 28769266 28769401 -213894952 + MIR SINE MIR 7 127 -81 371 208 0 0 chr1 28769418 28769490 -213894863 - MIR SINE MIR -106 156 85 1889 149 0 0 chr1 28769836 28770124 -213894229 - AluJb SINE Alu -22 290 3 219 266 80 62 chr1 28771484 28771535 -213892818 - L2 LINE L2 -93 3220 3171 959 203 13 48 chr1 28771535 28771715 -213892638 + MER20 DNA MER1_type 1 173 -46 2034 138 0 0 chr1 28771715 28772013 -213892340 + AluJb SINE Alu 1 298 -14 959 203 13 48 chr1 28772013 28772059 -213892294 + MER20 DNA MER1_type 173 219 0 219 266 80 62 chr1 28772059 28772120 -213892233 - L2 LINE L2 -142 3171 3106 402 322 160 27 chr1 28772354 28772834 -213891519 - L2 LINE L2 -6 3266 2718 2067 109 3 0 chr1 28772854 28773148 -213891205 - AluSg SINE Alu -15 295 1 1120 123 0 0 chr1 28773487 28773649 -213890704 + AluSg/x SINE Alu 130 291 -19 240 330 75 0 chr1 28773851 28773957 -213890396 - L2 LINE L2 -238 3034 2921 962 194 127 99 chr1 28773982 28774141 -213890212 + MLT1J LTR MaLR 36 189 -322 2015 104 19 19 chr1 28774141 28774448 -213889905 - AluSx SINE Alu -5 307 1 962 194 127 99 chr1 28774448 28774576 -213889777 + MLT1J LTR MaLR 189 312 -199 237 33 0 0 chr1 28774576 28774606 -213889747 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 962 194 127 99 chr1 28774606 28774623 -213889730 + MLT1J LTR MaLR 312 327 -184 1992 45 0 4 chr1 28774623 28774867 -213889486 - AluY SINE Alu -68 243 1 962 194 127 99 chr1 28774867 28775023 -213889330 + MLT1J LTR MaLR 327 511 0 1143 147 5 47 chr1 28775449 28775660 -213888693 + AluJb SINE Alu 3 204 -108 449 67 0 0 chr1 28775663 28775723 -213888630 + AluSq/x SINE Alu 76 135 -178 2042 114 10 0 chr1 28775724 28776013 -213888340 + AluSq SINE Alu 2 293 -20 2230 81 14 0 chr1 28776022 28776318 -213888035 + AluSq SINE Alu 1 300 -13 1856 124 3 49 chr1 28776457 28776763 -213887590 + AluSx SINE Alu 1 292 -20 1652 90 0 57 chr1 28776817 28776904 -213887449 + AluSg/x SINE Alu 72 162 -150 2423 66 0 3 chr1 28776904 28777208 -213887145 - AluY SINE Alu -8 303 1 1652 90 0 57 chr1 28777208 28777365 -213886988 + AluSg/x SINE Alu 162 302 -10 1952 101 24 10 chr1 28777453 28777749 -213886604 + AluSx SINE Alu 1 300 -12 421 183 81 10 chr1 28778048 28778158 -213886195 - MIR SINE MIR -65 143 39 200 229 98 0 chr1 28778304 28778365 -213885988 - L2 LINE L2 -653 2661 2595 641 251 35 48 chr1 28778367 28778594 -213885759 - L2 LINE L2 0 3313 3090 190 300 0 0 chr1 28778628 28778668 -213885685 - L2 LINE L2 -346 2968 2929 1027 164 0 40 chr1 28778979 28779180 -213885173 - AluJb SINE Alu -32 280 88 2013 105 11 0 chr1 28779248 28779533 -213884820 + AluSp SINE Alu 1 288 -25 1115 142 0 0 chr1 28779538 28779707 -213884646 + AluSg/x SINE Alu 125 293 -19 30 0 0 0 chr1 28779710 28779740 -213884613 + AT_rich Low_complexity Low_complexity 1 30 0 577 174 54 67 chr1 28779747 28779815 -213884538 + AluJo SINE Alu 5 72 -240 2269 95 0 3 chr1 28779815 28780120 -213884233 - AluSq SINE Alu -9 304 1 577 174 54 67 chr1 28780120 28780200 -213884153 + AluJo SINE Alu 72 151 -161 1877 142 3 3 chr1 28780203 28780491 -213883862 - AluSq SINE Alu -25 288 1 1678 100 4 8 chr1 28780546 28780785 -213883568 + AluSx SINE Alu 61 298 -14 2058 103 3 10 chr1 28780785 28781096 -213883257 + AluSg SINE Alu 1 310 0 692 232 148 11 chr1 28781123 28781479 -213882874 + L1MC4a LINE L1 5121 5523 -748 332 274 216 19 chr1 28781539 28781552 -213882801 + L1MC4a LINE L1 5674 5683 -2125 222 37 0 0 chr1 28781552 28781579 -213882774 + (GA)n Simple_repeat Simple_repeat 2 28 0 332 274 216 19 chr1 28781579 28781773 -213882580 + L1MC4a LINE L1 5683 5922 -1886 544 223 43 80 chr1 28781975 28782117 -213882236 - MIR SINE MIR -6 256 121 2278 65 3 0 chr1 28782117 28782411 -213881942 + AluSx SINE Alu 1 295 -17 544 223 43 80 chr1 28782411 28782456 -213881897 - MIR SINE MIR -141 121 76 502 259 83 51 chr1 28782536 28782752 -213881601 - MIR SINE MIR -12 250 28 181 79 0 53 chr1 28783100 28783138 -213881215 + (CCG)n Simple_repeat Simple_repeat 1 36 0 368 268 113 36 chr1 28784728 28784881 -213879472 + MIR SINE MIR 2 163 -45 1209 183 122 30 chr1 28785327 28785590 -213878763 + AluJo SINE Alu 4 290 -12 2207 49 26 42 chr1 28786311 28786619 -213877734 + AluY SINE Alu 1 303 -8 2212 117 0 0 chr1 28786773 28787080 -213877273 + AluSx SINE Alu 1 307 -5 2108 111 3 3 chr1 28787392 28787698 -213876655 + AluSp SINE Alu 1 306 -7 22 70 0 0 chr1 28788462 28788505 -213875848 + AT_rich Low_complexity Low_complexity 1 43 0 2342 90 0 0 chr1 28788693 28789004 -213875349 - AluY SINE Alu 0 311 1 2538 51 0 0 chr1 28789253 28789564 -213874789 - AluY SINE Alu 0 311 1 1721 112 82 4 chr1 28789569 28789838 -213874515 - AluSx SINE Alu -22 290 1 24 0 0 0 chr1 28789976 28790000 -213874353 + AT_rich Low_complexity Low_complexity 1 24 0 2205 98 7 0 chr1 28790006 28790302 -213874051 + AluSc SINE Alu 1 298 -11 859 274 67 23 chr1 28790361 28790748 -213873605 - L1ME4a LINE L1 -196 5925 5522 2194 96 0 16 chr1 28790754 28791068 -213873285 - AluSx SINE Alu 0 312 4 28 71 0 0 chr1 28791099 28791155 -213873198 + AT_rich Low_complexity Low_complexity 1 56 0 2024 96 61 3 chr1 28791228 28791521 -213872832 + AluSx SINE Alu 1 310 -2 2367 64 0 22 chr1 28791531 28791844 -213872509 + AluY SINE Alu 1 306 -5 907 259 52 26 chr1 28791956 28792338 -213872015 - L1ME4a LINE L1 -215 5906 5515 2123 116 10 0 chr1 28792383 28792685 -213871668 + AluSx SINE Alu 1 305 -7 395 279 58 17 chr1 28793427 28793559 -213870794 - MIR SINE MIR -61 147 34 481 264 172 35 chr1 28795674 28795901 -213868452 + MIR SINE MIR 5 262 0 1705 136 3 60 chr1 28796644 28796961 -213867392 + AluSx SINE Alu 1 299 -13 544 315 63 13 chr1 28796966 28797204 -213867149 + MIR SINE MIR 5 254 -8 183 235 39 39 chr1 28797162 28797213 -213867140 - MIR SINE MIR -26 236 186 * 2156 117 0 0 chr1 28797291 28797590 -213866763 + AluSg SINE Alu 1 299 -11 219 239 63 113 chr1 28798166 28798308 -213866045 + MIR3 SINE MIR 12 146 -62 1012 177 59 15 chr1 28799890 28800093 -213864260 - MER46A DNA MER2_type -23 213 2 228 254 28 14 chr1 28800426 28800497 -213863856 + (TA)n Simple_repeat Simple_repeat 2 73 0 711 179 0 0 chr1 28800824 28800941 -213863412 + FLAM_A SINE Alu 1 117 -16 423 259 114 8 chr1 28800992 28801123 -213863230 - MIR3 SINE MIR -18 190 46 439 298 120 6 chr1 28801143 28801301 -213863052 + MIR SINE MIR 12 187 -75 23 0 0 0 chr1 28801903 28801926 -213862427 + AT_rich Low_complexity Low_complexity 1 23 0 2059 86 29 0 chr1 28803081 28803386 -213860967 + AluSx SINE Alu 1 313 0 405 0 0 0 chr1 28805820 28805865 -213858488 + (GTTTG)n Simple_repeat Simple_repeat 1 45 0 1917 78 56 7 chr1 28805865 28806134 -213858219 - AluSg1 SINE Alu -27 282 1 338 164 66 0 chr1 28806137 28806198 -213858155 - AluJ/FRAM SINE Alu -11 291 227 538 189 0 0 chr1 28806198 28806293 -213858060 - AluJb SINE Alu -195 117 23 1370 117 0 15 chr1 28806343 28806540 -213857813 + AluSg/x SINE Alu 101 294 -16 2007 108 14 10 chr1 28806791 28807086 -213857267 - AluSx SINE Alu -16 296 1 222 114 159 23 chr1 28807376 28807420 -213856933 - MIR SINE MIR -139 69 20 3837 94 3 52 chr1 28807667 28808243 -213856110 + LTR14 LTR ERVK 1 548 0 676 261 36 10 chr1 28808336 28808531 -213855822 + MIR SINE MIR 31 230 -32 1925 134 7 3 chr1 28808605 28808903 -213855450 - AluSx SINE Alu -13 299 1 516 101 0 0 chr1 28808917 28809010 -213855343 - AluSc SINE Alu 0 305 213 1608 173 3 14 chr1 28809183 28809467 -213854886 + AluSx SINE Alu 1 281 -31 1722 171 3 3 chr1 28809529 28809827 -213854526 - AluJo SINE Alu -14 298 1 1844 90 26 11 chr1 28810495 28810613 -213853740 + AluSg SINE Alu 15 130 -180 1910 96 13 46 chr1 28810613 28810916 -213853437 + AluSq SINE Alu 2 294 -19 1844 90 26 11 chr1 28810916 28811064 -213853289 + AluSg SINE Alu 130 285 -25 2191 70 17 17 chr1 28811075 28811376 -213852977 + AluSp SINE Alu 1 301 -12 416 329 187 21 chr1 28811462 28811529 -213852824 - L2 LINE L2 -21 3251 3196 2008 103 0 51 chr1 28811529 28811841 -213852512 + AluSx SINE Alu 1 296 -16 416 329 187 21 chr1 28811841 28812029 -213852324 - L2 LINE L2 -76 3196 3040 2198 104 0 13 chr1 28812029 28812338 -213852015 - AluSx SINE Alu -4 308 4 416 329 187 21 chr1 28812338 28812542 -213851811 - L2 LINE L2 -232 3040 2733 485 223 135 55 chr1 28812555 28812850 -213851503 - L1MC5 LINE L1 -28 7933 7608 909 144 0 0 chr1 28812850 28812982 -213851371 - FLAM_C SINE Alu -1 132 1 485 223 135 55 chr1 28812982 28813013 -213851340 - L1MC5 LINE L1 -353 7608 7581 686 251 85 73 chr1 28813026 28813437 -213850916 - L1MC4 LINE L1 -31 8011 7596 1087 130 0 0 chr1 28813466 28813635 -213850718 - AluSg/x SINE Alu -15 295 127 413 232 66 20 chr1 28813650 28813801 -213850552 - L1MC5 LINE L1 -535 7426 7269 495 243 93 29 chr1 28813810 28813950 -213850403 - L1MC4 LINE L1 -1125 6917 6769 357 331 156 44 chr1 28813987 28814414 -213849939 - L2 LINE L2 -610 2704 2221 2190 91 3 0 chr1 28814414 28814699 -213849654 + AluSp SINE Alu 1 286 -27 357 331 156 44 chr1 28814699 28814727 -213849626 - L2 LINE L2 -1093 2221 2198 1400 184 67 3 chr1 28814935 28815218 -213849135 - AluJb SINE Alu -11 301 1 2161 92 0 22 chr1 28815263 28815579 -213848774 - AluSg SINE Alu -1 309 1 266 282 0 53 chr1 28815984 28816216 -213848137 + GA-rich Low_complexity Low_complexity 1 219 0 29 70 0 0 chr1 28817107 28817164 -213847189 + AT_rich Low_complexity Low_complexity 1 57 0 2259 96 0 3 chr1 28817314 28817607 -213846746 + AluSg SINE Alu 1 292 -18 2117 130 13 0 chr1 28817921 28818222 -213846131 - AluSq SINE Alu -8 305 1 2299 84 7 3 chr1 28819371 28819670 -213844683 - AluSc SINE Alu -8 301 2 1112 92 0 0 chr1 28819670 28819812 -213844541 - AluSg SINE Alu -167 143 2 2440 68 0 0 chr1 28819836 28820130 -213844223 + AluY SINE Alu 2 295 -16 292 205 80 71 chr1 28820498 28820610 -213843743 - L2 LINE L2 -17 3296 3184 2287 78 0 13 chr1 28820901 28821207 -213843146 + AluY SINE Alu 1 302 -9 2255 108 7 0 chr1 28821214 28821509 -213842844 + AluSq SINE Alu 1 297 -16 2169 100 14 0 chr1 28821511 28821802 -213842551 + AluSp SINE Alu 1 295 -18 342 147 302 0 chr1 28822331 28822447 -213841906 + L1MCa LINE L1 2329 2479 -3947 203 0 37 0 chr1 28822448 28822475 -213841878 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1929 112 3 14 chr1 28822478 28822764 -213841589 - AluSx SINE Alu -29 283 1 509 134 0 0 chr1 28822795 28822862 -213841491 + AluS SINE Alu 6 72 -237 1455 116 40 33 chr1 28822975 28823278 -213841075 + Ricksha DNA DNA 2420 2809 -445 195 23 68 45 chr1 28823278 28823322 -213841031 + T-rich Low_complexity Low_complexity 3 47 0 3119 26 3 0 chr1 28823329 28823675 -213840678 - L1PA4 LINE L1 -3 6152 5806 486 117 65 13 chr1 28824076 28824153 -213840200 + Ricksha DNA DNA 2395 2475 -379 * 1890 126 23 7 chr1 28824151 28824461 -213839892 + Ricksha DNA DNA 2924 3238 -8 449 211 78 0 chr1 28824845 28824935 -213839418 + MER5A DNA MER1_type 9 105 -84 587 270 114 23 chr1 28824945 28825208 -213839145 - LTR28 LTR ERV1 0 1020 734 1530 84 0 110 chr1 28825709 28825781 -213838572 - L1MA8 LINE L1 -3 6288 6210 2378 93 0 16 chr1 28825781 28826094 -213838259 + AluSg SINE Alu 2 309 -1 1530 84 0 110 chr1 28826094 28826294 -213838059 - L1MA8 LINE L1 -81 6210 6046 306 241 112 9 chr1 28826497 28826613 -213837740 - MIR SINE MIR -85 177 50 364 253 95 0 chr1 28826756 28826851 -213837502 + L2 LINE L2 3208 3311 -2 216 271 187 0 chr1 28827091 28827198 -213837155 - MIR SINE MIR -70 192 66 21 36 0 0 chr1 28828412 28828440 -213835913 + AT_rich Low_complexity Low_complexity 1 28 0 1993 136 7 13 chr1 28828932 28829241 -213835112 - AluJb SINE Alu -4 308 2 206 308 0 77 chr1 28829266 28829357 -213834996 - MIR SINE MIR -82 126 43 1006 182 62 6 chr1 28829392 28829568 -213834785 - MER5A DNA MER1_type -2 187 2 425 333 49 19 chr1 28829577 28829739 -213834614 - MER5A DNA MER1_type 0 189 23 2355 36 47 0 chr1 28829947 28830226 -213834127 + AluY SINE Alu 1 292 -19 706 122 10 0 chr1 28830531 28830629 -213833724 + AluSg SINE Alu 3 101 -209 343 170 0 0 chr1 28830729 28830776 -213833577 + C-rich Low_complexity Low_complexity 1 47 0 193 336 87 39 chr1 28831356 28831460 -213832893 - MIR3 SINE MIR -51 157 49 2178 100 0 37 chr1 28831814 28832135 -213832218 + AluSx SINE Alu 1 309 -3 2179 103 3 52 chr1 28832696 28833025 -213831328 - AluSp SINE Alu 0 313 1 225 158 53 0 chr1 28833229 28833267 -213831086 - Tigger3(Golem) DNA MER2_type 0 3036 2997 1099 154 6 0 chr1 28833267 28833436 -213830917 - AluJo SINE Alu -142 170 1 890 205 7 0 chr1 28833571 28833722 -213830631 + FRAM SINE Alu 1 152 -14 24 53 0 0 chr1 28833722 28833760 -213830593 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 28833906 28833930 -213830423 + AT_rich Low_complexity Low_complexity 1 24 0 2305 112 0 0 chr1 28833952 28834265 -213830088 - AluSq SINE Alu 0 313 1 471 149 0 0 chr1 28834402 28834469 -213829884 + FLAM_A SINE Alu 43 109 -33 2105 127 0 0 chr1 28834551 28834843 -213829510 + AluSx SINE Alu 1 292 -20 2160 96 11 0 chr1 28834948 28835230 -213829123 - AluSq SINE Alu -28 285 1 943 112 0 8 chr1 28836430 28836564 -213827789 - FLAM_C SINE Alu 0 133 1 1802 5 0 0 chr1 28837029 28837225 -213827128 + L1HS LINE L1 5803 5998 -157 300 130 0 0 chr1 28837325 28837379 -213826974 + Alu SINE Alu 247 300 0 1096 140 0 0 chr1 28837412 28837569 -213826784 - FRAM SINE Alu -8 158 2 1908 163 0 0 chr1 28839142 28839437 -213824916 - AluJb SINE Alu -14 298 4 208 356 0 0 chr1 28839439 28839529 -213824824 - MIR3 SINE MIR -8 200 111 201 309 209 0 chr1 28839586 28839696 -213824657 + MIR SINE MIR 33 165 -97 2248 86 3 7 chr1 28840076 28840366 -213823987 + AluSp SINE Alu 1 289 -24 122 83 0 7 chr1 28840510 28840812 -213823541 + AT_rich Low_complexity Low_complexity 1 300 0 33 114 0 0 chr1 28840847 28840935 -213823418 + AT_rich Low_complexity Low_complexity 1 88 0 1337 206 51 20 chr1 28841003 28841295 -213823058 - AluJo SINE Alu 0 302 2 1674 182 45 27 chr1 28841495 28841540 -213822813 + MER58B DNA MER1_type 1 44 -2376 2055 135 28 0 chr1 28841540 28841828 -213822525 - AluSx SINE Alu -16 296 1 1674 182 45 27 chr1 28841828 28842117 -213822236 + MER58B DNA MER1_type 44 341 0 866 144 0 0 chr1 28842358 28842483 -213821870 - FLAM_A SINE Alu -8 125 1 886 176 7 0 chr1 28842858 28843011 -213821342 - AluJb SINE Alu -22 290 137 582 263 157 53 chr1 28843635 28843935 -213820418 + L3 LINE CR1 1237 1567 -10 22 0 0 0 chr1 28843994 28844016 -213820337 + AT_rich Low_complexity Low_complexity 1 22 0 2264 112 3 0 chr1 28844280 28844576 -213819777 - AluSx SINE Alu -15 297 1 2561 57 3 0 chr1 28844597 28844894 -213819459 - AluY SINE Alu -11 300 3 21 0 0 0 chr1 28845858 28845879 -213818474 + AT_rich Low_complexity Low_complexity 1 21 0 204 298 91 50 chr1 28846366 28846487 -213817866 - MIR SINE MIR -88 174 49 2424 92 0 0 chr1 28846640 28846944 -213817409 - AluSx SINE Alu -8 304 1 24 53 0 0 chr1 28847554 28847592 -213816761 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr1 28849141 28849163 -213815190 + AT_rich Low_complexity Low_complexity 1 22 0 2142 114 0 7 chr1 28849393 28849690 -213814663 + AluSx SINE Alu 3 297 -15 431 250 171 0 chr1 28849725 28849877 -213814476 + L1ME3A LINE L1 5988 6165 -5 262 286 0 0 chr1 28850096 28850152 -213814201 - L2 LINE L2 0 3272 3217 2273 87 6 34 chr1 28850167 28850488 -213813865 + AluSq SINE Alu 1 312 -1 1693 113 0 17 chr1 28850488 28850726 -213813627 + AluSg/x SINE Alu 73 308 -4 757 224 132 26 chr1 28850828 28851056 -213813297 - MIR SINE MIR -3 259 8 1724 75 0 0 chr1 28852461 28852673 -213811680 + AluSc SINE Alu 82 293 -16 22 35 0 0 chr1 28852902 28852931 -213811422 + AT_rich Low_complexity Low_complexity 1 29 0 2224 122 3 3 chr1 28853364 28853676 -213810677 - AluSx SINE Alu 0 312 1 2455 69 0 0 chr1 28853884 28854190 -213810163 - AluY SINE Alu -5 306 1 1860 166 0 3 chr1 28854353 28854679 -213809674 - AluJb SINE Alu 0 325 1 2917 3 0 0 chr1 28854686 28854995 -213809358 - AluYa5 SINE Alu -2 309 1 489 124 8 14 chr1 28855455 28855705 -213808648 + AluSx SINE Alu 1 295 -17 417 340 49 14 chr1 28855744 28855888 -213808465 + L2 LINE L2 3119 3267 -5 1849 123 43 0 chr1 28855915 28856191 -213808162 + AluSx SINE Alu 6 293 -19 2242 99 3 16 chr1 28856312 28856615 -213807738 + AluY SINE Alu 1 299 -12 2425 82 0 3 chr1 28856733 28857038 -213807315 + AluSq SINE Alu 3 306 -7 363 368 37 37 chr1 28858061 28858224 -213806129 - L2 LINE L2 -6 3266 3104 307 197 82 34 chr1 28858362 28858485 -213805868 + MIR SINE MIR 31 154 -62 2103 138 0 3 chr1 28859043 28859339 -213805014 + AluSx SINE Alu 1 295 -17 280 304 36 18 chr1 28859353 28859465 -213804888 - MIR3 SINE MIR -28 180 67 784 170 67 0 chr1 28859588 28859723 -213804630 + AluJb SINE Alu 158 301 -11 2165 125 0 10 chr1 28859780 28860093 -213804260 - AluSx SINE Alu -2 310 1 1983 125 7 0 chr1 28860367 28860702 -213803651 + AluSx SINE Alu 1 337 0 2001 133 3 3 chr1 28860711 28861012 -213803341 + AluSx SINE Alu 1 301 -11 952 278 8 28 chr1 28861245 28861497 -213802856 + MIR SINE MIR 16 262 0 272 307 136 0 chr1 28861744 28861832 -213802521 - L2 LINE L2 -38 3275 3176 1963 138 7 0 chr1 28861973 28862280 -213802073 - AluSx SINE Alu 0 319 11 200 361 19 28 chr1 28862390 28862498 -213801855 - MIR SINE MIR -82 126 20 1319 272 105 37 chr1 28862533 28862915 -213801438 - L2 LINE L2 -35 3278 2820 719 216 155 0 chr1 28862915 28863096 -213801257 + MER3 DNA MER1_type 1 209 0 1319 272 105 37 chr1 28863096 28863366 -213800987 - L2 LINE L2 -493 2820 2570 1464 147 20 49 chr1 28863481 28863726 -213800627 - AluJb SINE Alu -69 243 6 1718 150 0 18 chr1 28863801 28864081 -213800272 - AluJb SINE Alu -10 302 28 10912 144 34 12 chr1 28864098 28865879 -213798474 - Ricksha DNA DNA 0 84 9 1916 121 7 0 chr1 28866130 28866402 -213797951 + AluSx SINE Alu 33 306 -6 435 260 0 10 chr1 28866414 28866514 -213797839 - MIR SINE MIR -71 137 39 * 520 268 118 0 chr1 28866509 28866711 -213797642 + MIR SINE MIR 29 256 -6 2382 97 6 6 chr1 28866765 28867076 -213797277 + AluSq SINE Alu 1 311 -2 789 126 54 0 chr1 28867076 28867187 -213797166 + AluSq SINE Alu 134 250 -63 186 133 0 0 chr1 28867187 28867217 -213797136 + (A)n Simple_repeat Simple_repeat 1 30 0 1351 210 32 4 chr1 28867250 28867502 -213796851 - AluJb SINE Alu -19 293 35 960 224 90 40 chr1 28867672 28867994 -213796359 - L2 LINE L2 -1 3312 2975 2118 98 28 3 chr1 28868106 28868413 -213795940 + AluSp SINE Alu 2 313 0 479 180 0 10 chr1 28868461 28868561 -213795792 + AluJo SINE Alu 36 134 -178 332 173 71 0 chr1 28868564 28868691 -213795662 + (TA)n Simple_repeat Simple_repeat 2 137 0 928 198 18 0 chr1 28868691 28868858 -213795495 + AluJo SINE Alu 124 293 -19 2332 112 3 0 chr1 28868861 28869173 -213795180 + AluSq SINE Alu 1 313 0 420 331 18 25 chr1 28869176 28869339 -213795014 + MIR SINE MIR 50 211 -51 1184 111 0 0 chr1 28869435 28869618 -213794735 + AluSg/x SINE Alu 130 312 0 1075 139 12 0 chr1 28869669 28869834 -213794519 + FRAM SINE Alu 1 162 -14 400 240 130 7 chr1 28870095 28870241 -213794112 + L1ME4a LINE L1 5731 5894 -227 185 0 40 0 chr1 28870499 28870524 -213793829 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1917 118 7 61 chr1 28870526 28870687 -213793666 - AluSx SINE Alu -30 282 143 2445 92 0 0 chr1 28870687 28870991 -213793362 - AluSq SINE Alu -9 304 1 1917 118 7 61 chr1 28870991 28871126 -213793227 - AluSx SINE Alu -169 143 2 405 239 60 26 chr1 28871302 28871419 -213792934 + MIR SINE MIR 21 141 -121 2221 126 3 0 chr1 28871575 28871885 -213792468 - AluSx SINE Alu -1 311 1 816 237 76 24 chr1 28871912 28872161 -213792192 + MIR SINE MIR 1 262 0 1985 193 64 41 chr1 28872320 28872352 -213792001 - L1ME2 LINE L1 -10 6154 6124 1759 164 4 7 chr1 28872352 28872498 -213791855 - AluJo SINE Alu -31 281 135 2247 110 0 19 chr1 28872498 28872806 -213791547 - AluSg SINE Alu -8 302 1 1759 164 4 7 chr1 28872806 28872940 -213791413 - AluJo SINE Alu -177 135 2 1985 193 64 41 chr1 28872940 28873154 -213791199 - L1ME2 LINE L1 -40 6124 5916 2157 124 0 10 chr1 28873154 28873452 -213790901 - AluSq SINE Alu -14 299 5 1985 193 64 41 chr1 28873452 28873662 -213790691 - L1ME2 LINE L1 -248 5916 5681 2121 124 7 10 chr1 28873662 28873969 -213790384 - AluSx SINE Alu -6 306 1 1985 193 64 41 chr1 28873969 28874045 -213790308 - L1ME2 LINE L1 -483 5681 5608 572 98 0 24 chr1 28874359 28874476 -213789877 - AluSp/q SINE Alu 0 318 204 2307 120 3 0 chr1 28874488 28874797 -213789556 - AluSg SINE Alu 0 310 1 2418 102 0 3 chr1 28875122 28875435 -213788918 - AluSx SINE Alu 0 312 1 602 238 0 0 chr1 28875917 28876043 -213788310 + FLAM_A SINE Alu 1 126 -7 344 254 77 15 chr1 28876163 28876293 -213788060 + MIR SINE MIR 119 256 -6 315 294 213 51 chr1 28876456 28876851 -213787502 - L2 LINE L2 -3 3269 2811 195 129 0 0 chr1 28876985 28877016 -213787337 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 1909 142 8 0 chr1 28877070 28877337 -213787016 + AluSx SINE Alu 1 269 -43 2325 101 3 0 chr1 28877557 28877853 -213786500 + AluSp SINE Alu 1 297 -16 211 184 0 0 chr1 28878078 28878116 -213786237 + L2 LINE L2 3268 3305 -8 292 138 52 0 chr1 28878363 28878421 -213785932 + Alu SINE Alu 240 300 -1 2480 85 0 0 chr1 28878422 28878728 -213785625 + AluY SINE Alu 1 306 -5 343 289 53 27 chr1 28878730 28878841 -213785512 + L1ME3A LINE L1 2325 2444 -3702 2223 132 0 0 chr1 28878841 28879145 -213785208 + AluSx SINE Alu 2 305 -7 343 289 53 27 chr1 28879145 28879220 -213785133 + L1ME3A LINE L1 2444 2516 -3630 2032 103 10 48 chr1 28879289 28879465 -213784888 - AluSx SINE Alu -11 301 141 2595 61 3 6 chr1 28879465 28879777 -213784576 - AluY SINE Alu 0 311 1 2032 103 10 48 chr1 28879777 28879912 -213784441 - AluSx SINE Alu -171 141 2 2269 113 0 0 chr1 28879954 28880245 -213784108 + AluSg SINE Alu 2 292 -18 776 237 16 5 chr1 28880253 28880439 -213783914 + L1ME3A LINE L1 4060 4247 -1899 1935 178 0 0 chr1 28880439 28880743 -213783610 + AluJb SINE Alu 1 304 -8 555 238 156 63 chr1 28880775 28880918 -213783435 + L1ME3A LINE L1 5621 5749 -421 2353 98 0 3 chr1 28880918 28881214 -213783139 + AluSp SINE Alu 1 295 -18 2461 72 7 7 chr1 28881214 28881518 -213782835 + AluY SINE Alu 1 304 -7 555 238 156 63 chr1 28881518 28881675 -213782678 + L1ME3A LINE L1 5748 5950 -220 747 138 0 0 chr1 28881705 28881821 -213782532 + AluJo/FLAM SINE Alu 1 116 -186 1932 151 23 0 chr1 28881824 28882173 -213782180 - AluSx SINE Alu 0 356 1 328 281 8 66 chr1 28882188 28882309 -213782044 + L1ME3A LINE L1 5944 6057 -113 1786 95 4 4 chr1 28882363 28882604 -213781749 + AluSx SINE Alu 50 290 -22 2615 30 40 0 chr1 28882641 28882937 -213781416 - AluY SINE Alu -3 308 1 356 249 0 12 chr1 28882978 28883075 -213781278 + FLAM_A SINE Alu 4 72 -61 * 403 104 17 0 chr1 28883070 28883144 -213781209 - Alu SINE Alu -243 57 1 343 223 62 36 chr1 28883378 28883490 -213780863 + L1ME LINE L1 5630 5744 -377 2288 91 0 33 chr1 28883668 28883975 -213780378 - AluSq SINE Alu -16 297 1 451 177 21 21 chr1 28884435 28884531 -213779822 + MIR SINE MIR 70 165 -97 231 284 74 21 chr1 28884537 28884632 -213779721 + MIR3 SINE MIR 13 112 -96 201 74 0 0 chr1 28886365 28886392 -213777961 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 640 161 50 0 chr1 28886429 28886493 -213777860 + CT-rich Low_complexity Low_complexity 3 62 -109 2614 58 3 3 chr1 28886493 28886803 -213777550 - AluSg SINE Alu 0 310 1 640 161 50 0 chr1 28886803 28886899 -213777454 + CT-rich Low_complexity Low_complexity 62 171 0 2243 106 10 13 chr1 28886901 28887240 -213777113 - AluSx SINE Alu 0 339 2 216 0 0 0 chr1 28887240 28887264 -213777089 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 729 176 0 22 chr1 28887282 28887418 -213776935 - FLAM_C SINE Alu 0 133 1 1759 161 49 3 chr1 28887963 28888249 -213776104 + AluJb SINE Alu 1 299 -13 4359 111 66 75 chr1 28888409 28889805 -213774548 + pTR5 LTR ERV1 742 2438 0 384 93 0 0 chr1 28890180 28890234 -213774119 + Alu SINE Alu 3 56 -246 832 165 0 0 chr1 28890237 28890370 -213773983 + AluSp/q SINE Alu 163 295 -18 2227 117 7 0 chr1 28890378 28890677 -213773676 + AluSx SINE Alu 1 301 -11 2102 110 10 35 chr1 28890682 28890992 -213773361 + AluSx SINE Alu 3 304 -8 219 295 36 0 chr1 28891001 28891094 -213773259 + MIR SINE MIR 47 144 -108 307 306 63 0 chr1 28891465 28891576 -213772777 + MIR SINE MIR 28 145 -117 188 271 177 10 chr1 28892337 28892433 -213771920 + MIR SINE MIR 77 188 -74 832 69 0 0 chr1 28892610 28892711 -213771642 - AluSg/x SINE Alu -14 296 196 2180 115 7 10 chr1 28892826 28892996 -213771357 - AluSx SINE Alu -8 304 134 2574 66 0 3 chr1 28892996 28893298 -213771055 - AluY SINE Alu -10 301 1 2180 115 7 10 chr1 28893298 28893432 -213770921 - AluSx SINE Alu -178 134 1 1878 134 40 4 chr1 28893444 28893720 -213770633 - AluJo SINE Alu -26 286 1 387 207 37 0 chr1 28893732 28893814 -213770539 - MIR SINE MIR -71 191 107 343 214 62 0 chr1 28893919 28894031 -213770322 - L2 LINE L2 -30 3242 3124 21 71 0 0 chr1 28895111 28895153 -213769200 + GC_rich Low_complexity Low_complexity 1 42 0 26 98 0 0 chr1 28896040 28896122 -213768231 + GC_rich Low_complexity Low_complexity 1 82 0 30 45 0 0 chr1 28898280 28898324 -213766029 + GC_rich Low_complexity Low_complexity 1 44 0 2400 71 14 3 chr1 28901635 28901929 -213762424 + AluSq SINE Alu 1 297 -16 2294 102 10 16 chr1 28903586 28903890 -213760463 + AluSx SINE Alu 1 302 -10 2373 119 0 0 chr1 28904618 28904930 -213759423 - AluSx SINE Alu 0 312 1 236 330 89 9 chr1 28905267 28905379 -213758974 - MIR SINE MIR -83 179 59 2203 114 20 0 chr1 28905380 28905679 -213758674 - AluSq SINE Alu -8 305 1 425 331 0 20 chr1 28906306 28906457 -213757896 - MIR SINE MIR -107 155 8 363 286 95 0 chr1 28906900 28907047 -213757306 - MIR3 SINE MIR -4 204 44 397 262 205 9 chr1 28907186 28907396 -213756957 - MIR SINE MIR 0 262 12 843 176 0 34 chr1 28907739 28907887 -213756466 + FLAM_C SINE Alu 1 143 0 2439 97 0 0 chr1 28908044 28908343 -213756010 - AluSg SINE Alu -11 299 1 2294 78 11 0 chr1 28908361 28908665 -213755688 - AluY SINE Alu 0 307 1 2360 101 0 0 chr1 28908849 28909145 -213755208 - AluSx SINE Alu -6 306 11 1815 148 0 65 chr1 28909664 28909988 -213754365 - AluJb SINE Alu -9 303 1 2060 138 3 0 chr1 28910000 28910289 -213754064 - AluSx SINE Alu -22 290 1 2412 85 3 0 chr1 28910829 28911124 -213753229 - AluSp SINE Alu -17 296 1 2035 117 4 4 chr1 28911183 28911496 -213752857 + AluSx SINE Alu 1 313 0 2310 105 3 0 chr1 28911592 28911898 -213752455 + AluSp SINE Alu 1 307 -6 1350 101 0 0 chr1 28911991 28912160 -213752193 - AluSg/x SINE Alu -10 302 134 2382 97 6 6 chr1 28912160 28912471 -213751882 - AluSq SINE Alu -2 311 1 499 268 118 0 chr1 28912525 28912727 -213751626 - MIR SINE MIR -6 256 29 412 260 0 10 chr1 28912722 28912822 -213751531 + MIR SINE MIR 39 137 -71 * 2230 112 10 10 chr1 28912826 28913138 -213751215 - AluSp SINE Alu -1 312 1 2349 85 7 26 chr1 28913236 28913379 -213750974 + AluSx SINE Alu 1 145 -167 2699 46 3 0 chr1 28913379 28913684 -213750669 + AluY SINE Alu 1 306 -5 2349 85 7 26 chr1 28913684 28913847 -213750506 + AluSx SINE Alu 145 301 -11 297 224 0 0 chr1 28914293 28914351 -213750002 + MIR3 SINE MIR 151 208 0 473 86 0 75 chr1 28915341 28915434 -213748919 + AluSg/x SINE Alu 219 304 -5 486 283 133 6 chr1 28915437 28915603 -213748750 - MIR SINE MIR -74 188 2 2518 55 0 3 chr1 28915672 28915963 -213748390 + AluY SINE Alu 1 290 -21 463 159 0 15 chr1 28915978 28916064 -213748289 - FRAM/FAM SINE Alu -101 75 1 1809 155 0 4 chr1 28918383 28918661 -213745692 - AluJo SINE Alu -14 298 22 2035 147 30 0 chr1 28919024 28919357 -213744996 - MER2 DNA MER2_type -1 343 1 228 177 51 38 chr1 28919499 28919578 -213744775 + L1PA13 LINE L1 4391 4470 -1676 * 235 61 0 0 chr1 28919558 28919591 -213744762 + L1PA13 LINE L1 4743 4775 -1371 2107 143 3 10 chr1 28919591 28919905 -213744448 + AluSx SINE Alu 1 312 0 6051 104 19 2 chr1 28919930 28920261 -213744092 + L1PA13 LINE L1 4766 5090 -1073 2165 109 0 0 chr1 28920261 28920545 -213743808 - AluSg SINE Alu -26 284 1 6051 104 19 2 chr1 28920545 28921618 -213742735 + L1PA13 LINE L1 5090 6163 0 2418 76 20 0 chr1 28921778 28922079 -213742274 + AluSp SINE Alu 1 307 -6 219 184 0 0 chr1 28923142 28923180 -213741173 - L2 LINE L2 -8 3305 3268 2274 101 3 0 chr1 28923405 28923701 -213740652 - AluSp SINE Alu -16 297 1 1887 142 8 0 chr1 28923921 28924188 -213740165 - AluSx SINE Alu -43 269 1 195 129 0 0 chr1 28924242 28924273 -213740080 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 426 291 215 53 chr1 28924407 28924802 -213739551 + L2 LINE L2 2811 3269 -3 385 254 77 15 chr1 28924965 28925095 -213739258 - MIR SINE MIR -6 256 119 626 238 0 0 chr1 28925215 28925341 -213739012 - FLAM_A SINE Alu -7 126 1 2379 99 0 3 chr1 28925823 28926136 -213738217 + AluSx SINE Alu 1 312 0 2281 86 7 0 chr1 28926509 28926799 -213737554 + AluSp SINE Alu 1 292 -21 2469 69 10 0 chr1 28926929 28927232 -213737121 + AluY SINE Alu 1 306 -5 306 289 139 64 chr1 28927545 28927598 -213736755 + L1ME4a LINE L1 5930 5978 -143 2486 84 0 0 chr1 28927598 28927906 -213736447 + AluSc SINE Alu 1 308 -1 306 289 139 64 chr1 28927906 28928025 -213736328 + L1ME4a LINE L1 5978 6115 -6 1425 164 0 4 chr1 28928318 28928543 -213735810 + AluJb SINE Alu 1 224 -88 2284 105 3 7 chr1 28928725 28929031 -213735322 + AluSx SINE Alu 1 305 -7 2251 108 3 0 chr1 28931747 28932054 -213732299 + AluSx SINE Alu 1 308 -4 226 54 0 0 chr1 28932318 28932355 -213731998 - Alu SINE Alu -3 298 262 2342 92 0 0 chr1 28933013 28933308 -213731045 - AluSg SINE Alu -15 295 1 606 210 57 13 chr1 28933397 28933554 -213730799 - MIR SINE MIR -2 260 97 712 168 0 0 chr1 28934434 28934541 -213729812 + FLAM_A SINE Alu 3 109 -33 2226 116 0 0 chr1 28934623 28934926 -213729427 + AluSx SINE Alu 1 303 -9 778 218 20 5 chr1 28934928 28935125 -213729228 - MER46C DNA MER2_type -47 291 92 339 274 66 19 chr1 28935442 28935548 -213728805 - MIR SINE MIR -95 167 57 1663 163 9 77 chr1 28936198 28936523 -213727830 + AluJo SINE Alu 1 303 -9 32 67 0 0 chr1 28937031 28937091 -213727262 + AT_rich Low_complexity Low_complexity 1 60 0 393 364 156 3 chr1 28937351 28937711 -213726642 - L2 LINE L2 -36 3236 2822 739 211 29 5 chr1 28938085 28938289 -213726064 + L1MA7 LINE L1 6079 6287 -4 2276 87 7 0 chr1 28938431 28938730 -213725623 + AluY SINE Alu 1 301 -10 1797 175 3 20 chr1 28939132 28939429 -213724924 - AluJb SINE Alu -20 292 1 2152 128 0 3 chr1 28939443 28939740 -213724613 - AluSq SINE Alu -17 296 1 33 0 0 0 chr1 28940171 28940204 -213724149 + AT_rich Low_complexity Low_complexity 1 33 0 2011 124 28 0 chr1 28940396 28940679 -213723674 + AluSx SINE Alu 1 291 -21 1395 193 80 57 chr1 28940740 28941216 -213723137 - HAL1 LINE L1 -667 1840 1354 230 220 0 68 chr1 28941261 28941320 -213723033 + L2 LINE L2 3216 3270 -2 364 273 312 7 chr1 28941343 28941497 -213722856 + MIR SINE MIR 61 261 -1 734 196 95 20 chr1 28941521 28941669 -213722684 + AluJb SINE Alu 1 159 -153 1805 122 0 4 chr1 28941775 28942029 -213722324 + AluSq SINE Alu 50 302 -11 2512 73 0 0 chr1 28942260 28942562 -213721791 - AluSg SINE Alu -8 302 1 1966 145 36 7 chr1 28942704 28943007 -213721346 - AluJb SINE Alu 0 312 1 23 0 0 0 chr1 28944601 28944624 -213719729 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 28945081 28945113 -213719240 + AT_rich Low_complexity Low_complexity 1 32 0 184 361 0 14 chr1 28946614 28946686 -213717667 + MIR SINE MIR 184 254 -8 1834 185 3 10 chr1 28946820 28947134 -213717219 + AluJb SINE Alu 1 312 0 2221 78 3 3 chr1 28947139 28947445 -213716908 + AluY SINE Alu 1 306 0 309 295 137 22 chr1 28947551 28947690 -213716663 + MIR SINE MIR 34 188 -74 21 0 0 0 chr1 28948371 28948392 -213715961 + AT_rich Low_complexity Low_complexity 1 21 0 207 219 16 0 chr1 28948835 28948882 -213715471 - MIR SINE MIR -50 158 107 1860 164 0 7 chr1 28948922 28949214 -213715139 - AluJo SINE Alu -22 290 1 2036 109 0 0 chr1 28949448 28949715 -213714638 - AluSx SINE Alu -45 267 1 24 32 0 0 chr1 28950389 28950420 -213713933 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr1 28951025 28951056 -213713297 + AT_rich Low_complexity Low_complexity 1 31 0 2377 81 7 0 chr1 28951305 28951602 -213712751 - AluY SINE Alu 0 311 13 785 161 0 115 chr1 28951609 28951783 -213712570 - AluJb SINE Alu -22 290 137 929 150 43 5 chr1 28951795 28951982 -213712371 - L1MC4 LINE L1 -961 7081 6888 779 197 71 26 chr1 28951985 28952225 -213712128 - L1MC4 LINE L1 -1316 6679 6441 295 205 134 27 chr1 28952686 28952798 -213711555 - L1ME4a LINE L1 -3 6118 5995 2236 67 3 7 chr1 28953749 28954074 -213710279 - AluSg1 SINE Alu 0 324 1 2277 103 0 3 chr1 28954079 28954371 -213709982 - AluSc SINE Alu -18 291 1 672 313 85 0 chr1 28954398 28954622 -213709731 - MIR SINE MIR -18 244 2 598 168 0 112 chr1 28954630 28954714 -213709639 - Charlie1a DNA MER1_type -1306 1455 1404 2312 104 3 3 chr1 28954714 28955021 -213709332 - AluSp SINE Alu -6 307 1 598 168 0 112 chr1 28955021 28955132 -213709221 - Charlie1a DNA MER1_type -1357 1404 1282 2323 47 7 0 chr1 28955474 28955807 -213708546 - AluY SINE Alu 0 335 1 1948 98 77 18 chr1 28955808 28956094 -213708259 - AluSg SINE Alu -4 306 4 2875 6 0 0 chr1 28956106 28956444 -213707909 - AluYa5 SINE Alu 0 338 1 1496 126 0 0 chr1 28957050 28957257 -213707096 - AluSg/x SINE Alu -7 303 97 1755 164 3 11 chr1 28957257 28957543 -213706810 - AluJb SINE Alu -27 285 1 225 0 0 0 chr1 28957549 28957574 -213706779 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr1 28957696 28957718 -213706635 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 28958102 28958123 -213706230 + AT_rich Low_complexity Low_complexity 1 21 0 2555 59 0 0 chr1 28958252 28958558 -213705795 + AluY SINE Alu 1 306 -5 545 218 23 45 chr1 28959742 28959875 -213704478 + MER20 DNA MER1_type 1 130 -89 325 120 0 0 chr1 28960198 28960248 -213704105 - Alu SINE Alu -6 294 245 2375 88 7 0 chr1 28960623 28960929 -213703424 + AluSx SINE Alu 1 308 -4 2329 82 3 3 chr1 28961043 28961335 -213703018 + AluY SINE Alu 1 292 -19 224 342 44 9 chr1 28961846 28961960 -213702393 + MIR SINE MIR 37 154 -108 564 113 0 10 chr1 28961991 28962088 -213702265 - L1MB8 LINE L1 0 6178 6083 303 282 65 24 chr1 28962490 28962614 -213701739 + MER5B DNA MER1_type 50 178 0 187 260 67 58 chr1 28962664 28962768 -213701585 + MIR SINE MIR 112 216 -46 297 163 0 0 chr1 28963227 28963276 -213701077 + MIR SINE MIR 212 260 -2 289 266 120 63 chr1 28963312 28963470 -213700883 + MIR3 SINE MIR 10 126 -82 2466 60 13 0 chr1 28963507 28963805 -213700548 + AluSp SINE Alu 1 302 -11 250 138 0 17 chr1 28963834 28963892 -213700461 + L1M4 LINE L1 3172 3228 -2918 228 98 0 0 chr1 28963889 28963930 -213700423 + L1MA7 LINE L1 6237 6277 -14 * 2060 105 18 14 chr1 28963930 28964216 -213700137 + AluSq SINE Alu 1 287 -26 282 29 0 0 chr1 28964216 28964251 -213700102 + (CATA)n Simple_repeat Simple_repeat 2 36 0 319 271 57 0 chr1 28964276 28964398 -213699955 + L1M4 LINE L1 3211 3339 -2807 1418 204 0 15 chr1 28964464 28964724 -213699629 + AluJo SINE Alu 1 256 -56 1353 145 0 0 chr1 28964848 28965041 -213699312 + AluSq SINE Alu 105 297 -16 4265 165 72 46 chr1 28965041 28965301 -213699052 - Charlie1a DNA MER1_type -1468 1293 1041 2382 84 0 3 chr1 28965301 28965598 -213698755 - AluSg SINE Alu -14 296 1 4265 165 72 46 chr1 28965598 28965649 -213698704 - Charlie1a DNA MER1_type -1720 1041 993 24 0 0 0 chr1 28965649 28965673 -213698680 + AT_rich Low_complexity Low_complexity 1 24 0 4265 165 72 46 chr1 28965673 28966159 -213698194 - Charlie1a DNA MER1_type -1768 993 521 2422 80 0 0 chr1 28966159 28966461 -213697892 + AluY SINE Alu 3 304 -7 4265 165 72 46 chr1 28966461 28966876 -213697477 - Charlie1a DNA MER1_type -2240 521 1 335 278 0 37 chr1 28966877 28966985 -213697368 + MIR SINE MIR 158 261 -1 189 247 200 12 chr1 28966983 28967068 -213697285 + L3 LINE CR1 1471 1571 -6 * 1348 199 68 25 chr1 28967096 28967377 -213696976 + AluJo SINE Alu 1 293 -19 31 26 0 0 chr1 28967489 28967527 -213696826 + AT_rich Low_complexity Low_complexity 1 38 0 2119 99 0 3 chr1 28967694 28967976 -213696377 + AluSg1 SINE Alu 23 303 -6 4494 120 12 6 chr1 29018122 29018812 -213645541 + L1P LINE L1 4075 4768 -1378 300 283 30 37 chr1 29018855 29019009 -213645344 - MIR SINE MIR -65 143 26 1589 98 47 4 chr1 29019914 29020169 -213644184 + L1MA2 LINE L1 6039 6304 0 207 211 0 0 chr1 29022762 29022800 -213641553 - L2 LINE L2 -20 3293 3256 181 283 94 0 chr1 29022833 29022886 -213641467 - L2 LINE L2 -5 3267 3210 * 734 225 7 0 chr1 29022852 29022994 -213641359 - MIR SINE MIR -23 239 97 309 287 93 9 chr1 29023860 29023968 -213640385 + MIR SINE MIR 31 147 -61 1372 90 0 0 chr1 29024194 29024372 -213639981 + AluSq SINE Alu 1 178 -135 302 0 0 26 chr1 29024787 29024826 -213639527 + (TG)n Simple_repeat Simple_repeat 1 38 0 744 256 92 0 chr1 29025687 29025882 -213638471 + MIR SINE MIR 40 252 -10 285 313 40 20 chr1 29026304 29026403 -213637950 + L2 LINE L2 3203 3303 -10 207 188 0 0 chr1 29026412 29026460 -213637893 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 23 78 0 0 chr1 29027002 29027053 -213637300 + AT_rich Low_complexity Low_complexity 1 51 0 2328 68 7 10 chr1 29027959 29028266 -213636087 + AluSx SINE Alu 1 306 -6 267 301 59 29 chr1 29028272 29028408 -213635945 + MIR3 SINE MIR 55 194 -14 1435 152 5 0 chr1 29030387 29030611 -213633742 - AluSx SINE Alu -87 225 1 526 292 6 0 chr1 29030673 29030841 -213633512 - L1MC4 LINE L1 -1 8041 7873 2135 112 0 0 chr1 29030881 29031177 -213633176 - AluSq SINE Alu -17 296 1 1424 98 0 29 chr1 29031462 29031666 -213632687 - Charlie3 DNA MER1_type -4 2706 2509 277 211 122 33 chr1 29032645 29032735 -213631618 + MIR SINE MIR 144 241 -21 2452 14 0 0 chr1 29035110 29035388 -213628965 - AluYa5 SINE Alu 0 311 34 330 87 0 0 chr1 29037247 29037293 -213627060 + (GA)n Simple_repeat Simple_repeat 1 46 0 332 22 0 22 chr1 29038274 29038320 -213626033 + (TG)n Simple_repeat Simple_repeat 2 46 0 206 309 144 0 chr1 29038705 29038802 -213625551 - MIR SINE MIR -6 256 146 2213 73 0 20 chr1 29038915 29039216 -213625137 + AluSx SINE Alu 1 295 -17 530 303 62 0 chr1 29039218 29039396 -213624957 - MIR SINE MIR -71 191 3 2473 140 3 5 chr1 29040020 29040405 -213623948 - Tigger2a DNA MER2_type -49 385 2 308 267 193 27 chr1 29040621 29040771 -213623582 - MIR SINE MIR -62 200 26 410 316 29 35 chr1 29040895 29041066 -213623287 - MIR3 SINE MIR -9 199 30 243 0 0 0 chr1 29041109 29041136 -213623217 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 224 0 0 chr1 29041740 29041789 -213622564 + (TG)n Simple_repeat Simple_repeat 2 50 0 1663 100 116 4 chr1 29042431 29042690 -213621663 - AluSx SINE Alu -12 300 13 23 0 0 0 chr1 29042807 29042830 -213621523 + AT_rich Low_complexity Low_complexity 1 23 0 222 254 34 0 chr1 29042854 29042913 -213621440 + (CATA)n Simple_repeat Simple_repeat 1 61 0 347 320 48 8 chr1 29043244 29043369 -213620984 + L2 LINE L2 2954 3083 -189 272 226 89 44 chr1 29043774 29043918 -213620435 + MIR SINE MIR 34 192 -64 392 248 9 44 chr1 29044494 29044576 -213619777 + MIR3 SINE MIR 76 154 -54 1530 194 3 3 chr1 29044576 29044870 -213619483 - AluJo SINE Alu -18 294 1 392 248 9 44 chr1 29044870 29044900 -213619453 + MIR3 SINE MIR 154 184 -24 411 21 0 0 chr1 29045201 29045249 -213619104 + (CA)n Simple_repeat Simple_repeat 2 49 0 372 241 0 35 chr1 29045784 29045871 -213618482 - AluJb SINE Alu -98 204 121 393 200 0 0 chr1 29045884 29045959 -213618394 - MER116 DNA Mariner -5 75 1 1825 115 41 24 chr1 29045999 29046294 -213618059 - AluSx SINE Alu -12 300 1 370 309 59 13 chr1 29046294 29046446 -213617907 - MIR SINE MIR -1 261 103 815 152 40 0 chr1 29046450 29046575 -213617778 + AluJ SINE Alu 7 136 -176 976 166 23 6 chr1 29046623 29046798 -213617555 + AluJ SINE Alu 120 297 -15 725 101 18 28 chr1 29046938 29047047 -213617306 + AluJo/FLAM SINE Alu 24 131 -181 2007 112 3 7 chr1 29047047 29047343 -213617010 + AluSq SINE Alu 1 295 -18 2341 76 0 16 chr1 29047343 29047657 -213616696 + AluY SINE Alu 1 309 -2 2198 103 0 3 chr1 29048304 29048616 -213615737 + AluSx SINE Alu 1 311 -1 237 344 16 0 chr1 29048647 29048711 -213615642 + MIR SINE MIR 50 114 -94 1488 168 30 60 chr1 29048720 29048903 -213615450 - MLT1A2 LTR MaLR -17 357 170 2069 118 3 0 chr1 29048903 29049207 -213615146 - AluSx SINE Alu -7 305 1 1976 112 0 14 chr1 29049215 29049372 -213614981 - AluSx SINE Alu -22 290 137 2299 76 10 3 chr1 29049372 29049675 -213614678 - AluY SINE Alu -6 305 1 1976 112 0 14 chr1 29049675 29049811 -213614542 - AluSx SINE Alu -175 137 1 1488 168 30 60 chr1 29049811 29049952 -213614401 - MLT1A2 LTR MaLR -211 163 34 22 0 0 0 chr1 29050236 29050258 -213614095 + AT_rich Low_complexity Low_complexity 1 22 0 2181 113 0 0 chr1 29050262 29050572 -213613781 + AluSg SINE Alu 1 310 0 266 310 110 10 chr1 29050583 29050683 -213613670 + MIR SINE MIR 37 146 -62 696 280 0 69 chr1 29050684 29050806 -213613547 - MIR SINE MIR -27 235 135 2092 120 16 3 chr1 29050806 29051114 -213613239 + AluSx SINE Alu 1 312 0 696 280 0 69 chr1 29051114 29051223 -213613130 - MIR SINE MIR -127 135 20 760 280 34 5 chr1 29051299 29051506 -213612847 - MIR SINE MIR -48 214 2 403 221 90 55 chr1 29051514 29051659 -213612694 - MIR SINE MIR -67 141 29 1333 253 40 53 chr1 29052350 29052593 -213611760 - L2 LINE L2 -14 3299 3054 2202 110 0 0 chr1 29052593 29052902 -213611451 + AluSx SINE Alu 1 309 -3 2236 92 0 0 chr1 29052904 29053197 -213611156 + AluSc SINE Alu 1 293 -16 2319 86 0 0 chr1 29053198 29053501 -213610852 + AluY SINE Alu 1 303 -8 1333 253 40 53 chr1 29053501 29053648 -213610705 - L2 LINE L2 -259 3054 2909 198 261 21 120 chr1 29053734 29053839 -213610514 - MIR SINE MIR -68 194 105 2070 135 0 0 chr1 29053839 29054142 -213610211 + AluSx SINE Alu 1 303 -9 198 261 21 120 chr1 29054142 29054178 -213610175 - MIR SINE MIR -157 105 67 212 200 40 20 chr1 29054206 29054256 -213610097 + L2 LINE L2 3263 3313 0 699 304 22 13 chr1 29054373 29054600 -213609753 - MIR SINE MIR -28 234 6 365 267 78 0 chr1 29054620 29054710 -213609643 - MIR3 SINE MIR -52 156 60 267 143 54 18 chr1 29055213 29055269 -213609084 - MIR SINE MIR -65 143 86 360 351 48 0 chr1 29055866 29056074 -213608279 - MIR SINE MIR -14 248 31 403 291 119 45 chr1 29056216 29056504 -213607849 + L2 LINE L2 2788 3093 -179 587 153 0 17 chr1 29056723 29056841 -213607512 + C-rich Low_complexity Low_complexity 2 117 0 195 69 0 0 chr1 29056835 29056864 -213607489 + (CCTA)n Simple_repeat Simple_repeat 4 32 0 * 1640 164 4 4 chr1 29056866 29057140 -213607213 - AluJb SINE Alu -36 276 3 185 317 33 0 chr1 29057140 29057200 -213607153 - MIR SINE MIR -105 103 42 188 370 14 0 chr1 29057774 29057847 -213606506 + L2 LINE L2 2929 3002 -270 202 263 40 61 chr1 29057878 29057977 -213606376 + L2 LINE L2 3141 3237 -35 788 233 83 31 chr1 29058170 29058398 -213605955 - MIR SINE MIR 0 262 23 2006 118 10 0 chr1 29058625 29058913 -213605440 + AluSx SINE Alu 1 291 -21 430 321 85 49 chr1 29058919 29059143 -213605210 + MIR SINE MIR 19 250 -12 408 244 65 16 chr1 29059288 29059411 -213604942 - MIR SINE MIR -86 176 48 212 313 60 27 chr1 29059623 29059793 -213604560 - MIR3 SINE MIR -69 139 15 486 225 58 51 chr1 29060104 29060242 -213604111 - L2 LINE L2 -1 3312 3174 203 286 219 9 chr1 29060256 29060361 -213603992 - MIR SINE MIR -108 154 28 549 221 103 29 chr1 29060864 29061000 -213603353 - L2 LINE L2 -12 3260 3115 1758 141 39 0 chr1 29061042 29061325 -213603028 + AluJb SINE Alu 1 294 -18 1996 124 7 0 chr1 29061326 29061617 -213602736 + AluSx SINE Alu 16 308 -4 800 220 22 58 chr1 29061617 29061674 -213602679 + MIR SINE MIR 47 105 -157 1822 109 84 0 chr1 29061674 29061972 -213602381 - AluSq SINE Alu 0 321 1 800 220 22 58 chr1 29061972 29062135 -213602218 + MIR SINE MIR 105 261 -1 252 304 33 11 chr1 29062192 29062284 -213602069 + MIR SINE MIR 157 250 -12 2185 93 3 16 chr1 29062298 29062608 -213601745 - AluSq SINE Alu -7 306 1 334 226 17 144 chr1 29062761 29062942 -213601411 - MIR SINE MIR -56 206 49 187 333 45 0 chr1 29063003 29063069 -213601284 + MIR SINE MIR 75 143 -119 228 193 70 35 chr1 29063227 29063284 -213601069 - MIR SINE MIR -68 140 85 708 243 136 37 chr1 29063579 29063793 -213600560 + MIR SINE MIR 28 262 0 299 213 93 0 chr1 29063951 29064026 -213600327 - MIR3 SINE MIR -32 176 95 2114 109 0 0 chr1 29064077 29064410 -213599943 + AluSx SINE Alu 1 333 0 341 265 12 0 chr1 29065265 29065348 -213599005 - MIR SINE MIR -84 124 41 2629 43 0 0 chr1 29065482 29065783 -213598570 + AluY SINE Alu 1 301 -10 232 219 31 62 chr1 29066448 29066576 -213597777 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 256 259 232 36 chr1 29067610 29067824 -213596529 + MIR SINE MIR 3 248 -14 205 337 11 11 chr1 29067962 29068051 -213596302 - L3 LINE CR1 -116 1461 1373 209 228 120 33 chr1 29068057 29068149 -213596204 - MIR3 SINE MIR 0 208 109 826 248 13 18 chr1 29068194 29068420 -213595933 + MIR SINE MIR 37 261 -1 194 239 0 43 chr1 29068548 29068594 -213595759 - L2 LINE L2 -93 3179 3136 214 222 28 28 chr1 29068931 29069003 -213595350 + MIR SINE MIR 135 206 -56 306 0 0 0 chr1 29069326 29069360 -213594993 + (TG)n Simple_repeat Simple_repeat 2 35 0 245 298 0 9 chr1 29069438 29069552 -213594801 + (TG)n Simple_repeat Simple_repeat 2 114 0 199 175 25 0 chr1 29069949 29069989 -213594364 - MIR SINE MIR -84 124 84 1581 79 0 20 chr1 29069994 29070197 -213594156 - AluSg/x SINE Alu -7 305 107 438 302 70 14 chr1 29070832 29071047 -213593306 - L2 LINE L2 -183 3089 2863 2174 113 0 10 chr1 29071244 29071572 -213592781 + AluSx SINE Alu 1 312 0 285 333 0 0 chr1 29071932 29072028 -213592325 - MIR SINE MIR -114 148 53 608 129 147 0 chr1 29072439 29072555 -213591798 + AluJb SINE Alu 2 134 -178 770 102 28 0 chr1 29072557 29072665 -213591688 + HY1 scRNA scRNA 2 112 0 35 0 0 0 chr1 29072665 29072700 -213591653 + AT_rich Low_complexity Low_complexity 1 35 0 1666 194 0 22 chr1 29072700 29073014 -213591339 + AluJb SINE Alu 1 307 -5 379 183 37 0 chr1 29073091 29073173 -213591180 - MER69 DNA AcHobo -3 2523 2439 2461 84 0 0 chr1 29073173 29073470 -213590883 + AluSx SINE Alu 1 297 -15 1973 124 7 0 chr1 29073488 29073763 -213590590 + AluSq SINE Alu 1 277 -36 1105 61 0 0 chr1 29073771 29073903 -213590450 - AluY SINE Alu -179 132 1 2047 137 10 13 chr1 29074020 29074333 -213590020 - AluJb SINE Alu 0 312 1 408 271 13 33 chr1 29074508 29074659 -213589694 - MIR3 SINE MIR -50 158 11 2490 93 0 0 chr1 29074845 29075155 -213589198 - AluSg SINE Alu 0 310 1 280 232 95 11 chr1 29075157 29075252 -213589101 + L2 LINE L2 3211 3313 0 205 213 0 0 chr1 29075716 29075763 -213588590 + MIR SINE MIR 83 129 -79 1609 189 38 0 chr1 29075766 29076057 -213588296 - AluJb SINE Alu -10 302 1 2552 78 0 0 chr1 29076071 29076378 -213587975 - AluSx SINE Alu -5 307 1 2361 63 0 7 chr1 29076441 29076728 -213587625 - AluSc SINE Alu -24 285 1 231 36 0 0 chr1 29077388 29077416 -213586937 + (TG)n Simple_repeat Simple_repeat 1 28 0 1781 146 3 10 chr1 29077466 29077760 -213586593 + AluJb SINE Alu 2 293 -19 306 267 11 0 chr1 29077766 29077856 -213586497 - L1MA4A LINE L1 -25 6278 6188 1102 130 117 9 chr1 29077857 29078080 -213586273 - L1MA4A LINE L1 -179 6124 5878 523 96 0 36 chr1 29078101 29078184 -213586169 - AluSg/x SINE Alu -62 250 171 1597 86 5 5 chr1 29078286 29078495 -213585858 + AluSp SINE Alu 95 303 -10 562 153 34 17 chr1 29079168 29079286 -213585067 + AluSp SINE Alu 2 121 -192 1141 46 0 0 chr1 29079435 29079565 -213584788 + AluY SINE Alu 5 134 -177 2393 84 0 7 chr1 29079565 29079874 -213584479 + AluY SINE Alu 1 307 -4 2251 104 3 0 chr1 29080808 29081097 -213583256 - AluSx SINE Alu -22 290 1 2384 88 7 3 chr1 29081126 29081433 -213582920 - AluSx SINE Alu -2 310 3 1724 150 0 18 chr1 29081659 29081939 -213582414 - AluJb SINE Alu -10 302 28 10630 149 35 14 chr1 29081956 29083738 -213580615 - Ricksha DNA DNA 0 84 9 2082 142 0 0 chr1 29084864 29085159 -213579194 + AluSx SINE Alu 2 296 -16 1899 169 3 0 chr1 29085363 29085659 -213578694 + AluJo SINE Alu 1 297 -15 2228 56 95 0 chr1 29086048 29086332 -213578021 - AluY SINE Alu 0 311 1 1090 98 0 0 chr1 29086787 29086920 -213577433 + AluSq/x SINE Alu 1 133 -180 2406 79 7 0 chr1 29086926 29087229 -213577124 + AluSx SINE Alu 1 305 -7 337 326 112 25 chr1 29087259 29087535 -213576818 + L2 LINE L2 2316 2615 -699 201 302 115 22 chr1 29087581 29087720 -213576633 + L3 LINE CR1 868 1019 -558 757 324 147 19 chr1 29087809 29088293 -213576060 + L3 LINE CR1 1021 1566 -11 1837 178 0 16 chr1 29088324 29088633 -213575720 + AluJo SINE Alu 1 304 -8 1737 172 0 17 chr1 29089123 29089414 -213574939 + AluJo SINE Alu 9 294 -18 1560 133 19 108 chr1 29089790 29090114 -213574239 + AluJb SINE Alu 1 295 -17 326 157 43 0 chr1 29090517 29090584 -213573769 - AluJ/FLAM SINE Alu -245 57 1 553 183 44 15 chr1 29090673 29090810 -213573543 - MIR SINE MIR -2 260 120 705 168 0 0 chr1 29091710 29091817 -213572536 + FLAM_A SINE Alu 3 109 -33 2200 113 0 0 chr1 29091899 29092191 -213572162 + AluSx SINE Alu 1 292 -20 2186 96 11 0 chr1 29092697 29092979 -213571374 - AluSq SINE Alu -28 285 1 890 112 0 8 chr1 29094178 29094312 -213570041 - FLAM_C SINE Alu 0 133 1 3167 9 0 0 chr1 29094777 29095126 -213569227 + L1HS LINE L1 5803 6151 -4 25 0 0 0 chr1 29095126 29095151 -213569202 + AT_rich Low_complexity Low_complexity 1 25 0 680 101 10 0 chr1 29095151 29095250 -213569103 - HY3 scRNA scRNA -1 100 1 424 252 109 112 chr1 29095309 29095694 -213568659 + L2 LINE L2 2915 3298 -15 2324 98 3 0 chr1 29095696 29095992 -213568361 + AluSx SINE Alu 1 297 -15 2005 164 0 3 chr1 29096001 29096300 -213568053 + AluJb SINE Alu 1 298 -14 479 217 52 9 chr1 29096413 29096528 -213567825 - L2 LINE L2 0 3313 3194 1966 202 119 101 chr1 29096593 29097448 -213566905 + LTR28 LTR ERV1 1 1020 0 414 211 78 0 chr1 29097458 29097548 -213566805 - MER5A DNA MER1_type -84 105 9 1861 124 31 9 chr1 29097933 29098318 -213566035 - Ricksha DNA DNA -8 3238 2792 2983 26 3 0 chr1 29098719 29099065 -213565288 + L1PA4 LINE L1 5806 6152 -3 195 23 68 45 chr1 29099072 29099116 -213565237 + A-rich Low_complexity Low_complexity 3 47 0 270 170 0 21 chr1 29099116 29099163 -213565190 - Ricksha DNA DNA -445 2409 2364 4488 125 29 11 chr1 29099164 29099861 -213564492 - Ricksha DNA DNA -573 2673 1965 259 282 65 24 chr1 29100393 29100517 -213563836 - MER5B DNA MER1_type 0 178 50 591 113 0 10 chr1 29100919 29101016 -213563337 + L1MB8 LINE L1 6083 6178 0 181 342 44 9 chr1 29101047 29101161 -213563192 - MIR SINE MIR -108 154 37 2357 82 3 3 chr1 29101672 29101964 -213562389 - AluY SINE Alu -19 292 1 2458 84 7 0 chr1 29102078 29102388 -213561965 - AluSx SINE Alu 0 312 1 2032 139 150 11 chr1 29103216 29103583 -213560770 + MSTA LTR MaLR 10 427 -1 1900 121 4 0 chr1 29104572 29104829 -213559524 + AluSq SINE Alu 1 258 -55 24 0 0 0 chr1 29105298 29105322 -213559031 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr1 29105922 29105953 -213558400 + AT_rich Low_complexity Low_complexity 1 31 0 2658 55 7 0 chr1 29106202 29106510 -213557843 - AluY SINE Alu -1 310 1 582 313 85 0 chr1 29106537 29106761 -213557592 - MIR SINE MIR -18 244 2 5779 162 80 66 chr1 29106769 29106853 -213557500 - Charlie1a DNA MER1_type -1306 1455 1374 2373 101 3 0 chr1 29106853 29107159 -213557194 - AluSp SINE Alu -6 307 1 5779 162 80 66 chr1 29107159 29107270 -213557083 - Charlie1a DNA MER1_type -1387 1374 1266 2173 131 0 0 chr1 29107270 29107567 -213556786 + AluSq SINE Alu 1 297 -16 5779 162 80 66 chr1 29107567 29107827 -213556526 - Charlie1a DNA MER1_type -1495 1266 1011 2347 84 0 7 chr1 29107827 29108124 -213556229 - AluSc SINE Alu -14 295 1 5779 162 80 66 chr1 29108124 29108685 -213555668 - Charlie1a DNA MER1_type -1750 1011 409 2410 86 0 0 chr1 29108685 29108987 -213555366 + AluY SINE Alu 3 304 -7 5779 162 80 66 chr1 29108987 29109402 -213554951 - Charlie1a DNA MER1_type -2352 409 1 289 278 0 37 chr1 29109403 29109511 -213554842 + MIR SINE MIR 158 261 -1 1267 209 67 28 chr1 29109622 29109904 -213554449 + AluJo SINE Alu 1 293 -19 31 26 0 0 chr1 29110016 29110054 -213554299 + AT_rich Low_complexity Low_complexity 1 38 0 2145 99 0 3 chr1 29110221 29110503 -213553850 + AluSg1 SINE Alu 23 303 -6 933 152 88 0 chr1 29110810 29110981 -213553372 - AluSx SINE Alu -126 186 1 33 0 0 0 chr1 29111173 29111206 -213553147 + AT_rich Low_complexity Low_complexity 1 33 0 2157 128 0 3 chr1 29111637 29111934 -213552419 + AluSq SINE Alu 1 296 -17 1825 168 3 20 chr1 29111948 29112245 -213552108 + AluJb SINE Alu 1 292 -20 2204 103 7 3 chr1 29112647 29112947 -213551406 - AluY SINE Alu -10 301 1 249 57 0 0 chr1 29113107 29113142 -213551211 + (TC)n Simple_repeat Simple_repeat 2 36 0 322 277 50 57 chr1 29113391 29113550 -213550803 - HAL1b LINE L1 0 1348 1191 2317 112 0 0 chr1 29113577 29113890 -213550463 + AluSq SINE Alu 1 313 0 24 0 0 0 chr1 29113912 29113936 -213550417 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr1 29114082 29114120 -213550233 + AT_rich Low_complexity Low_complexity 1 38 0 817 212 7 0 chr1 29114120 29114271 -213550082 - FRAM SINE Alu -14 152 1 1110 154 6 0 chr1 29114406 29114575 -213549778 + AluJo SINE Alu 1 170 -142 225 158 53 0 chr1 29114575 29114613 -213549740 + Tigger3(Golem) DNA MER2_type 2997 3036 0 2230 100 3 52 chr1 29114818 29115147 -213549206 + AluSp SINE Alu 1 313 0 2147 102 0 43 chr1 29115707 29116031 -213548322 - AluSx SINE Alu -2 310 1 1658 185 0 20 chr1 29116173 29116470 -213547883 - AluJo SINE Alu -21 291 1 267 117 34 6 chr1 29116600 29116646 -213547707 + MIR SINE MIR 101 201 -7 1634 164 173 21 chr1 29116832 29117259 -213547094 + LTR54B LTR ERV1 1 492 -6 1508 183 56 14 chr1 29117476 29117760 -213546593 - AluJb SINE Alu -16 296 1 355 273 312 7 chr1 29117784 29117938 -213546415 - MIR SINE MIR -1 261 61 228 220 0 68 chr1 29117961 29118020 -213546333 - L2 LINE L2 -2 3270 3216 1481 205 70 62 chr1 29118065 29118548 -213545805 + HAL1 LINE L1 1354 1840 -667 185 343 0 0 chr1 29118809 29118882 -213545471 + MIR3 SINE MIR 111 183 -25 236 200 0 0 chr1 29118884 29118929 -213545424 + Alu SINE Alu 120 164 -136 762 115 0 0 chr1 29118929 29119025 -213545328 - AluSq SINE Alu -118 195 100 1744 164 3 11 chr1 29119025 29119312 -213545041 - AluJb SINE Alu -27 285 1 180 0 0 0 chr1 29119318 29119338 -213545015 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 29119460 29119482 -213544871 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 29119866 29119887 -213544466 + AT_rich Low_complexity Low_complexity 1 21 0 2556 62 0 0 chr1 29120016 29120322 -213544031 + AluY SINE Alu 1 306 -5 262 286 0 0 chr1 29121371 29121427 -213542926 - L2 LINE L2 0 3272 3217 2281 87 6 34 chr1 29121442 29121764 -213542589 + AluSq SINE Alu 1 313 0 1693 113 0 17 chr1 29121762 29122002 -213542351 + AluSg/x SINE Alu 71 306 -4 * 757 224 132 26 chr1 29122104 29122332 -213542021 - MIR SINE MIR -3 259 8 1984 136 7 13 chr1 29123947 29124255 -213540098 - AluJb SINE Alu -5 307 2 206 308 0 77 chr1 29124280 29124371 -213539982 - MIR SINE MIR -82 126 43 1006 182 62 6 chr1 29124406 29124582 -213539771 - MER5A DNA MER1_type -2 187 2 425 333 49 19 chr1 29124591 29124753 -213539600 - MER5A DNA MER1_type 0 189 23 1264 187 0 18 chr1 29124893 29125112 -213539241 - AluJb SINE Alu -97 215 1 416 286 130 0 chr1 29125115 29125300 -213539053 - L1M4 LINE L1 -2727 3419 3211 249 57 0 0 chr1 29125325 29125360 -213538993 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2153 107 0 14 chr1 29125360 29125651 -213538702 - AluSq SINE Alu -26 287 1 253 122 0 20 chr1 29125651 29125700 -213538653 - L1MA7 LINE L1 -14 6277 6230 * 278 138 0 17 chr1 29125689 29125747 -213538606 - L1M4 LINE L1 -2918 3228 3172 2419 64 17 3 chr1 29125776 29126074 -213538279 - AluSp SINE Alu -11 302 1 238 225 81 20 chr1 29126111 29126207 -213538146 - MIR SINE MIR -82 126 74 478 238 0 10 chr1 29126224 29126325 -213538028 + LTR28 LTR ERV1 921 1020 0 1890 126 23 7 chr1 29126934 29127244 -213537109 - Ricksha DNA DNA -8 3246 2932 486 117 65 13 chr1 29127242 29127319 -213537034 - Ricksha DNA DNA -379 2475 2395 * 3068 29 3 3 chr1 29127720 29128067 -213536286 + L1PA4 LINE L1 5806 6152 -3 190 26 79 26 chr1 29128074 29128112 -213536241 + A-rich Low_complexity Low_complexity 3 42 0 629 89 0 0 chr1 29128213 29128292 -213536061 - AluS SINE Alu -233 80 2 2007 121 7 0 chr1 29128302 29128637 -213535716 - AluSx SINE Alu 0 337 1 2005 102 4 18 chr1 29128725 29129000 -213535353 - AluY SINE Alu -40 271 1 1849 123 43 0 chr1 29129121 29129397 -213534956 - AluSx SINE Alu -19 293 6 430 333 49 14 chr1 29129424 29129568 -213534785 - L2 LINE L2 -5 3267 3119 496 82 0 0 chr1 29129607 29129668 -213534685 - AluSx SINE Alu -16 294 234 1338 134 16 0 chr1 29129668 29129854 -213534499 - AluSx SINE Alu -123 189 1 647 202 60 44 chr1 29129882 29130065 -213534288 - L1MC5 LINE L1 -44 7917 7732 363 368 37 37 chr1 29130570 29130733 -213533620 - L2 LINE L2 -6 3266 3104 302 180 83 36 chr1 29130880 29130986 -213533367 + MIR SINE MIR 42 146 -62 2074 142 0 3 chr1 29131550 29131846 -213532507 + AluSx SINE Alu 1 295 -17 280 304 36 18 chr1 29131860 29131972 -213532381 - MIR3 SINE MIR -28 180 67 784 170 67 0 chr1 29132095 29132230 -213532123 + AluJb SINE Alu 158 301 -11 2165 125 0 10 chr1 29132287 29132600 -213531753 - AluSx SINE Alu -2 310 1 790 189 12 27 chr1 29133035 29133218 -213531135 - L1MC4 LINE L1 -1396 6599 6433 346 205 134 27 chr1 29133669 29133781 -213530572 - L1ME4a LINE L1 -3 6118 5995 1708 92 40 7 chr1 29134732 29135047 -213529306 - AluSg1 SINE Alu 0 324 1 1262 259 150 30 chr1 29135207 29135758 -213528595 + L2 LINE L2 2661 3313 0 2330 92 0 10 chr1 29135968 29136274 -213528079 - AluSq SINE Alu -10 303 1 205 343 172 54 chr1 29137052 29137349 -213527004 - L2 LINE L2 -4 3268 2937 1112 103 0 39 chr1 29137528 29137723 -213526630 - AluSg/x SINE Alu 0 320 132 2068 109 14 17 chr1 29137723 29138017 -213526336 - AluSx SINE Alu -19 293 1 206 368 0 15 chr1 29138642 29138710 -213525643 - MIR SINE MIR -123 85 19 444 19 0 0 chr1 29138783 29138836 -213525517 + (CA)n Simple_repeat Simple_repeat 1 53 0 1103 157 32 19 chr1 29139547 29139763 -213524590 + L1MB7 LINE L1 5940 6158 -26 562 103 0 0 chr1 29139763 29139817 -213524536 - MADE1 DNA Mariner -1 79 23 2353 82 0 10 chr1 29139817 29140120 -213524233 + AluSq SINE Alu 1 300 -13 562 103 0 0 chr1 29140120 29140143 -213524210 - MADE1 DNA Mariner -56 24 2 262 299 133 45 chr1 29140592 29140716 -213523637 - MIR SINE MIR -92 116 22 2405 88 0 3 chr1 29141125 29141430 -213522923 - AluSq SINE Alu -9 304 1 1464 147 67 70 chr1 29141435 29141735 -213522618 - AluJb SINE Alu -13 299 1 1878 128 6 42 chr1 29141881 29142193 -213522160 + AluJb SINE Alu 12 312 0 807 119 0 48 chr1 29142212 29142338 -213522015 + AluSq/x SINE Alu 14 133 -179 2201 128 3 0 chr1 29142664 29142969 -213521384 + AluSx SINE Alu 1 306 -6 2124 119 3 25 chr1 29143333 29143652 -213520701 - AluJb SINE Alu 0 312 1 1473 173 4 0 chr1 29143724 29143955 -213520398 - AluJb SINE Alu -20 292 61 29 21 0 21 chr1 29144051 29144070 -213520283 + AT_rich Low_complexity Low_complexity 1 19 -27 890 138 0 8 chr1 29144070 29144193 -213520160 + FLAM_C SINE Alu 5 126 -7 29 21 0 21 chr1 29144193 29144220 -213520133 + AT_rich Low_complexity Low_complexity 19 46 0 2016 150 0 0 chr1 29144481 29144768 -213519585 + AluSx SINE Alu 5 291 -21 271 272 100 56 chr1 29145293 29145473 -213518880 + L2 LINE L2 3120 3307 -6 2275 104 0 13 chr1 29146538 29146845 -213517508 + AluSc SINE Alu 1 303 -6 231 277 294 0 chr1 29148059 29148178 -213516175 + MER5B DNA MER1_type 1 154 -24 1010 202 34 0 chr1 29148199 29148377 -213515976 + MER5A DNA MER1_type 2 185 -4 180 125 0 0 chr1 29148565 29148597 -213515756 + (CATG)n Simple_repeat Simple_repeat 4 35 0 300 200 0 0 chr1 29148600 29148655 -213515698 - AluJ/FRAM SINE Alu -20 282 228 981 197 10 56 chr1 29148849 29149153 -213515200 + L1MC5 LINE L1 7347 7636 -325 1295 79 18 0 chr1 29149153 29149317 -213515036 + AluSq SINE Alu 1 167 -146 2240 98 0 13 chr1 29149629 29149936 -213514417 - AluSg SINE Alu -7 303 1 1866 136 0 79 chr1 29150280 29150610 -213513743 - AluJb SINE Alu -8 304 1 315 0 0 0 chr1 29150785 29150820 -213513533 + (TG)n Simple_repeat Simple_repeat 2 36 0 2162 106 7 3 chr1 29151047 29151340 -213513013 + AluSq SINE Alu 1 294 -19 288 279 72 27 chr1 29151809 29151920 -213512433 + MIR SINE MIR 21 136 -126 649 236 48 125 chr1 29151963 29152280 -213512073 + L1ME4a LINE L1 5587 5927 -243 2224 111 0 0 chr1 29152280 29152569 -213511784 + AluSg SINE Alu 1 289 -21 198 0 0 0 chr1 29152572 29152594 -213511759 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 649 236 48 125 chr1 29152594 29152687 -213511666 + L1ME4a LINE L1 5929 5969 -201 1656 182 18 3 chr1 29152734 29153020 -213511333 - AluJo SINE Alu -22 290 1 22 0 0 0 chr1 29153020 29153042 -213511311 + AT_rich Low_complexity Low_complexity 1 22 0 2273 92 0 7 chr1 29153222 29153514 -213510839 - AluSg SINE Alu -20 290 1 2236 56 49 26 chr1 29153646 29153950 -213510403 - AluY SINE Alu 0 311 1 1769 146 43 0 chr1 29154357 29154637 -213509716 - AluSx SINE Alu -20 292 1 2005 93 30 0 chr1 29154731 29155046 -213509307 - AluSc SINE Alu 0 323 1 901 73 0 0 chr1 29155775 29155884 -213508469 + AluY SINE Alu 1 109 -202 628 126 0 0 chr1 29155896 29155983 -213508370 + AluSg/x SINE Alu 208 294 -15 1807 157 17 7 chr1 29157070 29157357 -213506996 - AluJb SINE Alu -4 308 19 2141 95 18 0 chr1 29157364 29157647 -213506706 + AluSx SINE Alu 18 305 -7 6299 99 36 20 chr1 29157667 29158510 -213505843 - L1MA1 LINE L1 -1 6301 5442 2142 113 20 7 chr1 29158510 29158811 -213505542 - AluSx SINE Alu -7 305 1 6299 99 36 20 chr1 29158811 29158959 -213505394 - L1MA1 LINE L1 -860 5442 5298 4760 175 28 16 chr1 29159235 29160082 -213504271 + MER21B LTR ERV1 1 857 -6 273 219 171 0 chr1 29160113 29160218 -213504135 + L1ME4a LINE L1 5965 6087 -34 2419 74 7 0 chr1 29160259 29160568 -213503785 - AluSp SINE Alu -2 311 1 1554 165 40 47 chr1 29160789 29161086 -213503267 - AluJb SINE Alu -17 295 1 2420 71 0 0 chr1 29161515 29161811 -213502542 - AluSx SINE Alu -15 297 2 648 232 43 82 chr1 29162144 29162377 -213501976 + MLT1H1 LTR MaLR 327 550 -5 2059 87 22 4 chr1 29162439 29162754 -213501599 + AluSx SINE Alu 1 320 0 6558 197 71 85 chr1 29162754 29163386 -213500967 + L1MC3 LINE L1 3722 4361 -3424 1481 169 104 0 chr1 29163386 29163646 -213500707 + AluJb SINE Alu 11 297 -15 6558 197 71 85 chr1 29163646 29164489 -213499864 + L1MC3 LINE L1 4361 5214 -2571 2256 102 0 3 chr1 29164489 29164793 -213499560 + AluSg SINE Alu 1 303 -7 6558 197 71 85 chr1 29164793 29166247 -213498106 + L1MC3 LINE L1 5214 6686 -1099 2137 112 0 0 chr1 29166247 29166543 -213497810 - AluSc SINE Alu -13 296 1 6558 197 71 85 chr1 29166543 29166713 -213497640 + L1MC3 LINE L1 6686 6857 -928 270 0 0 0 chr1 29166713 29166743 -213497610 + (TG)n Simple_repeat Simple_repeat 2 31 0 1539 155 7 24 chr1 29166743 29167033 -213497320 - AluSx SINE Alu -27 285 1 1341 192 72 10 chr1 29167042 29167334 -213497019 - AluJb SINE Alu -2 310 1 6558 197 71 85 chr1 29167334 29167476 -213496877 + L1MC3 LINE L1 6864 7006 -779 351 0 0 0 chr1 29167476 29167515 -213496838 + (CA)n Simple_repeat Simple_repeat 2 40 0 6558 197 71 85 chr1 29167515 29167722 -213496631 + L1MC3 LINE L1 7006 7214 -571 319 275 11 11 chr1 29167722 29167813 -213496540 + MLT1F1 LTR MaLR 35 125 -442 6558 197 71 85 chr1 29167813 29168360 -213495993 + L1MC3 LINE L1 7214 7754 -31 972 197 99 5 chr1 29168413 29168626 -213495727 + L1MD3 LINE L1 7532 7764 -231 226 348 67 0 chr1 29168761 29168850 -213495503 + MIR SINE MIR 54 148 -114 2132 121 3 0 chr1 29169760 29170066 -213494287 + AluSx SINE Alu 1 307 -5 395 114 86 0 chr1 29170213 29170283 -213494070 + MER69 DNA AcHobo 1 76 -2450 605 205 57 52 chr1 29170283 29170348 -213494005 + MER69 DNA AcHobo 2162 2225 -301 2272 73 0 20 chr1 29170348 29170651 -213493702 + AluY SINE Alu 1 297 -14 605 205 57 52 chr1 29170651 29170795 -213493558 + MER69 DNA AcHobo 2225 2372 -154 1185 197 5 0 chr1 29170847 29171065 -213493288 - AluJb SINE Alu -93 219 1 450 167 83 0 chr1 29171065 29171173 -213493180 + MER69 DNA AcHobo 2357 2473 -53 2184 101 0 0 chr1 29171397 29171694 -213492659 + AluSx SINE Alu 1 297 -15 1684 155 6 50 chr1 29171714 29172031 -213492322 + AluJo SINE Alu 1 303 -9 1508 160 3 21 chr1 29172038 29172320 -213492033 + L1MB8 LINE L1 5902 6178 0 2249 73 3 10 chr1 29172349 29172650 -213491703 + AluSp SINE Alu 2 300 -13 2398 50 0 34 chr1 29172652 29172974 -213491379 + AluY SINE Alu 1 311 0 610 257 33 70 chr1 29173038 29173279 -213491074 - MIR SINE MIR 0 262 31 209 231 39 19 chr1 29174489 29174541 -213489812 + GA-rich Low_complexity Low_complexity 4 56 0 181 318 106 0 chr1 29174595 29174661 -213489692 + MIR SINE MIR 184 256 -6 277 296 211 0 chr1 29175456 29175608 -213488745 - MIR SINE MIR -6 256 73 319 257 250 20 chr1 29175692 29175840 -213488513 + MIR SINE MIR 48 229 -33 256 207 240 41 chr1 29175804 29175925 -213488428 - MIR SINE MIR 0 262 118 * 370 98 0 0 chr1 29175925 29175976 -213488377 + MSTA LTR MaLR 1 51 -377 304 48 0 177 chr1 29175972 29176034 -213488319 - AluSg/x SINE Alu -169 131 84 * 1094 153 39 20 chr1 29176034 29176237 -213488116 - AluJo SINE Alu -92 220 14 1146 277 82 47 chr1 29176306 29176771 -213487582 + L2 LINE L2 2715 3205 -108 1608 158 3 58 chr1 29176771 29176919 -213487434 + AluJo SINE Alu 1 125 -187 2266 84 3 0 chr1 29176919 29177217 -213487136 + AluSg SINE Alu 1 299 -11 1608 158 3 58 chr1 29177217 29177378 -213486975 + AluJo SINE Alu 125 293 -19 1146 277 82 47 chr1 29177378 29177491 -213486862 + L2 LINE L2 3205 3313 0 1873 216 62 43 chr1 29177497 29177635 -213486718 - MLT1F LTR MaLR 0 542 408 2043 117 3 3 chr1 29177635 29177934 -213486419 - AluSx SINE Alu -13 299 1 1873 216 62 43 chr1 29177934 29178327 -213486026 - MLT1F LTR MaLR -134 408 1 2114 89 62 0 chr1 29178788 29179080 -213485273 + AluSx SINE Alu 2 311 -1 1220 188 52 44 chr1 29179154 29179257 -213485096 + AluJo SINE Alu 1 102 -210 2180 101 0 3 chr1 29179257 29179555 -213484798 + AluSg SINE Alu 3 299 -11 1220 188 52 44 chr1 29179555 29179723 -213484630 + AluJo SINE Alu 102 274 -38 23 0 0 0 chr1 29179891 29179914 -213484439 + AT_rich Low_complexity Low_complexity 1 23 0 2209 103 0 0 chr1 29179914 29180216 -213484137 + AluSg SINE Alu 1 302 -8 216 0 0 0 chr1 29180219 29180243 -213484110 + (TA)n Simple_repeat Simple_repeat 1 24 0 642 218 0 0 chr1 29181114 29181224 -213483129 + FLAM_A SINE Alu 1 110 -32 25 0 0 0 chr1 29181226 29181251 -213483102 + AT_rich Low_complexity Low_complexity 1 25 0 1668 147 32 3 chr1 29181251 29181558 -213482795 + AluJb SINE Alu 1 312 0 37 23 0 0 chr1 29182335 29182379 -213481974 + AT_rich Low_complexity Low_complexity 1 44 0 1960 123 34 3 chr1 29182427 29182720 -213481633 + AluSx SINE Alu 1 302 -10 683 190 0 70 chr1 29183409 29183551 -213480802 - FLAM_C SINE Alu 0 133 2 1383 103 0 10 chr1 29183830 29184024 -213480329 + AluSc SINE Alu 1 192 -117 1408 178 3 53 chr1 29184287 29184590 -213479763 + AluJo SINE Alu 1 288 -24 2032 122 0 3 chr1 29184603 29184899 -213479454 + AluSc SINE Alu 1 295 -14 276 30 0 0 chr1 29184900 29184933 -213479420 + (CA)n Simple_repeat Simple_repeat 2 34 0 1946 125 7 7 chr1 29185091 29185386 -213478967 + AluJo SINE Alu 1 295 -17 2051 104 7 3 chr1 29185540 29185827 -213478526 - AluSx SINE Alu -23 289 2 256 269 67 75 chr1 29185997 29186131 -213478222 - MIR SINE MIR -12 250 118 233 115 0 58 chr1 29186430 29186482 -213477871 + (A)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr1 29187272 29187294 -213477059 + GC_rich Low_complexity Low_complexity 1 22 0 204 306 37 0 chr1 29187324 29187458 -213476895 + (CCG)n Simple_repeat Simple_repeat 2 140 0 28 29 0 0 chr1 29187627 29187662 -213476691 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 29187723 29187744 -213476609 + GC_rich Low_complexity Low_complexity 1 21 0 384 226 121 16 chr1 29188041 29188165 -213476188 + MIR3 SINE MIR 61 197 -11 208 196 41 10 chr1 29188489 29188554 -213475799 - MIR SINE MIR -96 166 100 250 299 0 15 chr1 29188642 29188709 -213475644 + MIR SINE MIR 23 88 -174 2114 70 32 0 chr1 29188709 29189015 -213475338 - AluSc SINE Alu 0 309 1 746 189 0 8 chr1 29189069 29189201 -213475152 + FRAM SINE Alu 28 158 -18 553 175 16 71 chr1 29189222 29189265 -213475088 + MIR SINE MIR 144 188 -74 2064 119 3 3 chr1 29189265 29189568 -213474785 + AluSq SINE Alu 1 303 -10 553 175 16 71 chr1 29189568 29189650 -213474703 + MIR SINE MIR 188 262 0 562 170 200 77 chr1 29189798 29190033 -213474320 + L2 LINE L2 3050 3313 0 380 233 8 90 chr1 29190034 29190126 -213474227 - MIR SINE MIR -57 151 72 2068 92 7 17 chr1 29190126 29190421 -213473932 - AluSp SINE Alu -21 292 1 380 233 8 90 chr1 29190421 29190461 -213473892 - MIR SINE MIR -136 72 30 302 276 52 17 chr1 29191964 29192080 -213472273 - L1ME4a LINE L1 -54 6067 5948 1286 151 8 29 chr1 29192080 29192318 -213472035 - AluJb SINE Alu -16 296 64 206 61 0 30 chr1 29192348 29192381 -213471972 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 1608 167 14 17 chr1 29192381 29192668 -213471685 - AluJo SINE Alu -26 286 1 216 86 0 0 chr1 29192673 29192708 -213471645 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 873 212 0 18 chr1 29192714 29192879 -213471474 - AluJo SINE Alu -30 282 121 393 200 0 0 chr1 29192892 29192967 -213471386 - MER116 DNA Mariner -5 75 1 1771 122 41 24 chr1 29193007 29193301 -213471052 - AluSx SINE Alu -13 299 1 342 169 78 0 chr1 29193373 29193450 -213470903 - L1ME4a LINE L1 -333 5788 5706 2174 94 0 0 chr1 29193452 29193762 -213470591 + AluSg SINE Alu 1 310 0 2009 122 0 0 chr1 29193766 29194062 -213470291 - AluSx SINE Alu -16 296 1 370 309 59 13 chr1 29194062 29194214 -213470139 - MIR SINE MIR -1 261 103 828 151 32 0 chr1 29194218 29194344 -213470009 + AluJ SINE Alu 7 136 -176 976 166 23 6 chr1 29194392 29194567 -213469786 + AluJ SINE Alu 120 297 -15 717 102 19 28 chr1 29194707 29194815 -213469538 + AluJo/FLAM SINE Alu 24 130 -182 2022 108 3 7 chr1 29194815 29195111 -213469242 + AluSq SINE Alu 1 295 -18 2214 79 26 13 chr1 29195111 29195416 -213468937 + AluY SINE Alu 1 309 -2 2160 109 0 3 chr1 29196063 29196376 -213467977 + AluSx SINE Alu 1 312 0 232 344 16 0 chr1 29196408 29196472 -213467881 + MIR SINE MIR 50 114 -94 1488 168 30 60 chr1 29196481 29196664 -213467689 - MLT1A2 LTR MaLR -17 357 170 2123 112 3 0 chr1 29196664 29196967 -213467386 - AluSx SINE Alu -8 304 1 1990 109 0 14 chr1 29196975 29197132 -213467221 - AluSx SINE Alu -22 290 137 2286 74 10 3 chr1 29197132 29197430 -213466923 - AluY SINE Alu -11 300 1 1990 109 0 14 chr1 29197430 29197566 -213466787 - AluSx SINE Alu -175 137 1 1488 168 30 60 chr1 29197566 29197707 -213466646 - MLT1A2 LTR MaLR -211 163 34 22 0 0 0 chr1 29197991 29198013 -213466340 + AT_rich Low_complexity Low_complexity 1 22 0 2188 113 0 0 chr1 29198017 29198327 -213466026 + AluSg SINE Alu 1 310 0 266 310 110 10 chr1 29198338 29198438 -213465915 + MIR SINE MIR 37 146 -62 696 280 0 69 chr1 29198439 29198561 -213465792 - MIR SINE MIR -27 235 135 2092 120 16 3 chr1 29198561 29198869 -213465484 + AluSx SINE Alu 1 312 0 696 280 0 69 chr1 29198869 29198978 -213465375 - MIR SINE MIR -127 135 20 760 280 34 5 chr1 29199054 29199261 -213465092 - MIR SINE MIR -48 214 2 403 221 90 55 chr1 29199269 29199414 -213464939 - MIR SINE MIR -67 141 29 1333 253 40 53 chr1 29200105 29200348 -213464005 - L2 LINE L2 -14 3299 3054 2202 110 0 0 chr1 29200348 29200657 -213463696 + AluSx SINE Alu 1 309 -3 2236 92 0 0 chr1 29200659 29200952 -213463401 + AluSc SINE Alu 1 293 -16 2319 86 0 0 chr1 29200953 29201256 -213463097 + AluY SINE Alu 1 303 -8 1333 253 40 53 chr1 29201256 29201403 -213462950 - L2 LINE L2 -259 3054 2909 198 261 21 120 chr1 29201489 29201594 -213462759 - MIR SINE MIR -68 194 105 2075 137 0 0 chr1 29201594 29201900 -213462453 + AluSx SINE Alu 1 306 -6 198 261 21 120 chr1 29201900 29201936 -213462417 - MIR SINE MIR -157 105 67 212 200 40 20 chr1 29201964 29202014 -213462339 + L2 LINE L2 3263 3313 0 699 304 22 13 chr1 29202131 29202358 -213461995 - MIR SINE MIR -28 234 6 365 267 78 0 chr1 29202378 29202468 -213461885 - MIR3 SINE MIR -52 156 60 267 143 54 18 chr1 29202971 29203027 -213461326 - MIR SINE MIR -65 143 86 360 351 48 0 chr1 29203624 29203832 -213460521 - MIR SINE MIR -14 248 31 403 291 119 45 chr1 29203974 29204262 -213460091 + L2 LINE L2 2788 3093 -179 659 158 0 15 chr1 29204481 29204614 -213459739 + C-rich Low_complexity Low_complexity 2 132 0 195 69 0 0 chr1 29204608 29204637 -213459716 + (CCTA)n Simple_repeat Simple_repeat 4 32 0 * 1640 164 4 4 chr1 29204639 29204913 -213459440 - AluJb SINE Alu -36 276 3 185 317 33 0 chr1 29204913 29204973 -213459380 - MIR SINE MIR -105 103 42 188 370 14 0 chr1 29205543 29205616 -213458737 + L2 LINE L2 2929 3002 -270 202 263 40 61 chr1 29205647 29205746 -213458607 + L2 LINE L2 3141 3237 -35 788 233 83 31 chr1 29205939 29206167 -213458186 - MIR SINE MIR 0 262 23 2022 115 10 0 chr1 29206394 29206682 -213457671 + AluSx SINE Alu 1 291 -21 430 321 85 49 chr1 29206688 29206912 -213457441 + MIR SINE MIR 19 250 -12 408 244 65 16 chr1 29207057 29207180 -213457173 - MIR SINE MIR -86 176 48 212 313 60 27 chr1 29207392 29207562 -213456791 - MIR3 SINE MIR -69 139 15 486 225 58 51 chr1 29207873 29208011 -213456342 - L2 LINE L2 -1 3312 3174 203 286 219 9 chr1 29208025 29208130 -213456223 - MIR SINE MIR -108 154 28 549 221 103 29 chr1 29208633 29208769 -213455584 - L2 LINE L2 -12 3260 3115 1744 145 39 0 chr1 29208811 29209094 -213455259 + AluJb SINE Alu 1 294 -18 2017 120 7 0 chr1 29209095 29209387 -213454966 + AluSx SINE Alu 16 309 -3 800 220 22 58 chr1 29209387 29209444 -213454909 + MIR SINE MIR 47 105 -157 1809 113 84 0 chr1 29209444 29209742 -213454611 - AluSq SINE Alu 0 321 1 800 220 22 58 chr1 29209742 29209905 -213454448 + MIR SINE MIR 105 261 -1 272 299 31 10 chr1 29209962 29210059 -213454294 + MIR SINE MIR 157 255 -7 2194 93 3 16 chr1 29210063 29210375 -213453978 - AluSq SINE Alu -5 308 1 334 226 17 144 chr1 29210528 29210709 -213453644 - MIR SINE MIR -56 206 49 187 333 45 0 chr1 29210770 29210836 -213453517 + MIR SINE MIR 75 143 -119 228 193 70 35 chr1 29210994 29211051 -213453302 - MIR SINE MIR -68 140 85 708 243 136 37 chr1 29211346 29211560 -213452793 + MIR SINE MIR 28 262 0 299 213 93 0 chr1 29211718 29211793 -213452560 - MIR3 SINE MIR -32 176 95 2129 105 0 0 chr1 29211844 29212183 -213452170 + AluSx SINE Alu 1 339 0 341 265 12 0 chr1 29213038 29213121 -213451232 - MIR SINE MIR -84 124 41 2497 43 0 0 chr1 29213255 29213556 -213450797 + AluY SINE Alu 1 301 -10 232 219 31 62 chr1 29214221 29214349 -213450004 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 306 273 220 31 chr1 29215383 29215605 -213448748 + MIR SINE MIR 3 256 -6 239 347 11 11 chr1 29215735 29215830 -213448523 - L3 LINE CR1 -116 1461 1367 232 239 120 33 chr1 29215830 29215922 -213448431 - MIR3 SINE MIR 0 208 109 889 248 13 18 chr1 29215967 29216193 -213448160 + MIR SINE MIR 37 261 -1 187 261 0 43 chr1 29216321 29216367 -213447986 - L2 LINE L2 -93 3179 3136 206 236 28 28 chr1 29216704 29216776 -213447577 + MIR SINE MIR 135 206 -56 450 0 0 0 chr1 29217099 29217149 -213447204 + (TG)n Simple_repeat Simple_repeat 2 51 0 245 298 0 9 chr1 29217227 29217341 -213447012 + (TG)n Simple_repeat Simple_repeat 2 114 0 204 175 25 0 chr1 29217738 29217778 -213446575 - MIR SINE MIR -84 124 84 1493 80 0 20 chr1 29217781 29217981 -213446372 - AluSg/x SINE Alu -10 300 105 473 307 70 14 chr1 29218616 29218831 -213445522 - L2 LINE L2 -183 3089 2863 2253 102 0 9 chr1 29219028 29219343 -213445010 + AluSx SINE Alu 1 312 0 356 313 0 0 chr1 29219722 29219818 -213444535 - MIR SINE MIR -114 148 53 643 138 138 0 chr1 29220228 29220344 -213444009 + FLAM_C SINE Alu 1 132 -1 772 102 28 0 chr1 29220347 29220455 -213443898 + HY1 scRNA scRNA 2 112 0 35 0 0 0 chr1 29220455 29220490 -213443863 + AT_rich Low_complexity Low_complexity 1 35 0 1604 186 0 23 chr1 29220502 29220808 -213443545 + AluJb SINE Alu 13 311 -1 382 183 37 0 chr1 29220881 29220963 -213443390 - MER69 DNA AcHobo -3 2523 2439 2394 74 0 0 chr1 29220963 29221260 -213443093 + AluSx SINE Alu 1 297 -15 1944 116 7 0 chr1 29221278 29221553 -213442800 + AluSq SINE Alu 1 277 -36 1113 38 0 0 chr1 29221560 29221692 -213442661 - AluY SINE Alu -179 132 1 1994 134 10 13 chr1 29221809 29222122 -213442231 - AluJb SINE Alu 0 312 1 448 291 7 26 chr1 29222297 29222448 -213441905 - MIR3 SINE MIR -50 158 11 2387 91 0 0 chr1 29222634 29222942 -213441411 - AluSg SINE Alu -2 308 1 293 232 95 11 chr1 29222944 29223039 -213441314 + L2 LINE L2 3211 3313 0 220 213 0 0 chr1 29223502 29223549 -213440804 + MIR SINE MIR 83 129 -79 1552 189 38 0 chr1 29223552 29223843 -213440510 - AluJb SINE Alu -10 302 1 2462 77 0 0 chr1 29223855 29224166 -213440187 - AluSx SINE Alu -1 311 1 2243 63 0 7 chr1 29224201 29224520 -213439833 - AluSc SINE Alu 0 317 1 195 42 0 0 chr1 29225180 29225204 -213439149 + (TG)n Simple_repeat Simple_repeat 1 24 0 1712 146 3 10 chr1 29225254 29225549 -213438804 + AluJb SINE Alu 2 294 -18 4098 132 37 64 chr1 29225555 29225897 -213438456 - L1MA4A LINE L1 -25 6278 5928 1801 103 0 12 chr1 29225897 29226150 -213438203 - AluSx SINE Alu -62 250 1 4098 132 37 64 chr1 29226150 29226523 -213437830 - L1MA4A LINE L1 -375 5928 5530 2086 119 0 0 chr1 29226523 29226817 -213437536 + AluSx SINE Alu 1 294 -18 4098 132 37 64 chr1 29226817 29227023 -213437330 - L1MA4A LINE L1 -773 5530 5320 933 140 5 85 chr1 29227023 29227036 -213437317 - AluJo/FRAM SINE Alu 0 312 300 2207 108 0 3 chr1 29227036 29227343 -213437010 - AluSq SINE Alu -1 312 7 1982 113 0 53 chr1 29227351 29227670 -213436683 - AluSx SINE Alu -10 302 1 933 140 5 85 chr1 29227670 29227847 -213436506 - AluJo/FRAM SINE Alu -19 293 129 2158 92 3 0 chr1 29227853 29228192 -213436161 - AluSp SINE Alu 0 340 1 396 0 0 0 chr1 29228366 29228410 -213435943 + (GA)n Simple_repeat Simple_repeat 2 45 0 217 244 44 67 chr1 29228833 29228880 -213435473 - MIR SINE MIR -70 192 146 2239 87 13 3 chr1 29228880 29229190 -213435163 - AluSp SINE Alu 0 313 1 217 244 44 67 chr1 29229190 29229232 -213435121 - MIR SINE MIR -116 146 105 2031 102 7 3 chr1 29229289 29229583 -213434770 + AluSx SINE Alu 1 295 -17 255 61 0 0 chr1 29229636 29229669 -213434684 + (CA)n Simple_repeat Simple_repeat 1 33 0 2253 82 7 0 chr1 29230469 29230762 -213433591 - AluSg1 SINE Alu -14 295 1 233 273 122 58 chr1 29231192 29231331 -213433022 - MIR3 SINE MIR -28 180 33 2239 89 30 0 chr1 29231639 29231942 -213432411 + AluSx SINE Alu 1 312 0 197 135 0 54 chr1 29232008 29232045 -213432308 - MIR SINE MIR -14 248 214 180 255 21 0 chr1 29232086 29232133 -213432220 - L2 LINE L2 -61 3252 3205 191 279 162 18 chr1 29232143 29232254 -213432099 - MIR SINE MIR -77 185 59 663 214 31 35 chr1 29232486 29232689 -213431664 + MIR SINE MIR 16 223 -39 2261 105 0 0 chr1 29233317 29233622 -213430731 - AluSg SINE Alu -5 305 1 193 260 20 0 chr1 29233700 29233750 -213430603 - L2 LINE L2 -12 3260 3210 264 229 43 29 chr1 29233790 29233860 -213430493 - MIR SINE MIR -96 112 42 387 233 75 33 chr1 29233883 29234003 -213430350 - MIR3 SINE MIR -39 169 45 329 296 32 0 chr1 29234087 29234212 -213430141 + L2 LINE L2 1966 2094 -1220 344 189 165 6 chr1 29234362 29234482 -213429871 - MIR SINE MIR -12 250 105 1494 151 0 94 chr1 29234540 29234677 -213429676 + AluJo SINE Alu 1 149 -163 2102 107 3 13 chr1 29234677 29234987 -213429366 + AluSx SINE Alu 1 307 -5 1494 151 0 94 chr1 29234987 29235180 -213429173 + AluJo SINE Alu 149 300 -12 530 291 84 24 chr1 29235535 29235748 -213428605 + MIR SINE MIR 23 248 -14 253 315 139 79 chr1 29235754 29236122 -213428231 + L2 LINE L2 2869 3258 -14 195 196 43 0 chr1 29236313 29236359 -213427994 + L2 LINE L2 3018 3065 -207 232 245 0 0 chr1 29237863 29237912 -213426441 + CT-rich Low_complexity Low_complexity 1 49 0 1713 131 28 3 chr1 29237913 29238195 -213426158 - AluJo SINE Alu -23 289 1 211 387 14 7 chr1 29239544 29239686 -213424667 + L2 LINE L2 2922 3064 -208 341 301 128 20 chr1 29239810 29239965 -213424388 + MIR SINE MIR 28 210 -52 2274 88 0 19 chr1 29239965 29240282 -213424071 + AluY SINE Alu 1 311 0 341 301 128 20 chr1 29240282 29240322 -213424031 + MIR SINE MIR 210 244 -18 1959 150 3 0 chr1 29240438 29240745 -213423608 + AluJb SINE Alu 1 308 -4 360 325 152 0 chr1 29240761 29240952 -213423401 + L3 LINE CR1 1345 1564 -13 249 280 200 0 chr1 29241022 29241122 -213423231 - MIR3 SINE MIR -12 196 77 362 314 36 15 chr1 29241407 29241544 -213422809 + MIR3 SINE MIR 15 154 -54 384 230 317 45 chr1 29241725 29241802 -213422551 + MLT1J2 LTR MaLR 61 116 -330 2168 114 3 0 chr1 29241802 29242099 -213422254 - AluSx SINE Alu -14 298 1 384 230 317 45 chr1 29242099 29242308 -213422045 + MLT1J2 LTR MaLR 116 425 -21 203 276 0 122 chr1 29243282 29243336 -213421017 - MIR SINE MIR -85 123 85 2174 123 0 0 chr1 29243336 29243637 -213420716 + AluSq SINE Alu 1 301 -12 203 276 0 122 chr1 29243637 29243680 -213420673 - MIR SINE MIR -123 85 38 2572 32 0 6 chr1 29243768 29244081 -213420272 + AluY SINE Alu 1 311 0 2197 86 0 17 chr1 29244087 29244389 -213419964 + AluSc SINE Alu 1 297 -12 1499 178 32 23 chr1 29244394 29244516 -213419837 + AluJb SINE Alu 1 120 -192 204 40 0 0 chr1 29244516 29244541 -213419812 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1499 178 32 23 chr1 29244541 29244727 -213419626 + AluJb SINE Alu 120 312 0 592 282 31 31 chr1 29244802 29244997 -213419356 + MIR SINE MIR 48 242 -20 515 275 42 36 chr1 29245667 29245711 -213418642 - MIR3 SINE MIR -8 200 158 438 286 15 61 chr1 29245711 29245907 -213418446 + MER5A DNA MER1_type 2 188 -1 515 275 42 36 chr1 29245907 29246055 -213418298 - MIR3 SINE MIR -50 158 7 1312 251 91 42 chr1 29246687 29247232 -213417121 + L2 LINE L2 2709 3287 -26 2198 99 3 0 chr1 29247232 29247524 -213416829 + AluSg SINE Alu 1 293 -17 1560 168 21 7 chr1 29247661 29247947 -213416406 + AluJo SINE Alu 1 290 -22 1969 138 20 0 chr1 29248141 29248445 -213415908 + AluJb SINE Alu 1 310 -2 718 242 39 35 chr1 29248445 29248676 -213415677 - HAL1 LINE L1 0 2507 2276 440 275 206 13 chr1 29248803 29249036 -213415317 - MLT1J2 LTR MaLR -153 297 20 2119 127 0 6 chr1 29249162 29249476 -213414877 + AluSq SINE Alu 1 312 -1 1024 181 0 0 chr1 29249498 29249658 -213414695 - FAM SINE Alu -15 160 1 2437 267 61 74 chr1 29249658 29249986 -213414367 - HAL1 LINE L1 -314 2193 1862 2397 71 3 0 chr1 29249986 29250296 -213414057 - AluY SINE Alu 0 311 1 2245 61 57 0 chr1 29250296 29250592 -213413761 - AluSp SINE Alu 0 313 1 2437 267 61 74 chr1 29250592 29251348 -213413005 - HAL1 LINE L1 -644 1863 1099 1415 183 21 21 chr1 29251348 29251559 -213412794 - AluJo SINE Alu 0 334 121 2176 99 3 0 chr1 29251559 29251853 -213412500 + AluSp SINE Alu 1 295 -18 1415 183 21 21 chr1 29251853 29251975 -213412378 - AluJo SINE Alu -212 122 1 2437 267 61 74 chr1 29251975 29252002 -213412351 - HAL1 LINE L1 -1408 1099 1073 2401 62 0 3 chr1 29252002 29252306 -213412047 + AluY SINE Alu 1 303 -8 2437 267 61 74 chr1 29252306 29252621 -213411732 - HAL1 LINE L1 -1434 1073 782 321 186 0 0 chr1 29252624 29252694 -213411659 + (TG)n Simple_repeat Simple_repeat 2 71 0 690 294 54 75 chr1 29252704 29252942 -213411411 - HAL1 LINE L1 -1730 777 553 905 92 0 8 chr1 29252942 29253061 -213411292 - FLAM_C SINE Alu -15 118 1 690 294 54 75 chr1 29253061 29253305 -213411048 - HAL1 LINE L1 -1954 553 305 400 250 18 18 chr1 29253328 29253440 -213410913 - MIR SINE MIR -103 159 48 297 289 68 105 chr1 29253544 29253838 -213410515 - L2 LINE L2 -2 3311 3029 392 155 56 0 chr1 29253838 29253909 -213410444 + MLT1A2 LTR MaLR 1 75 -299 1998 104 10 7 chr1 29253925 29254214 -213410139 - AluSg SINE Alu -19 291 2 1800 157 11 0 chr1 29254320 29254630 -213409723 - AluJb SINE Alu 0 313 1 2132 107 0 0 chr1 29254830 29255121 -213409232 + AluSq SINE Alu 1 291 -22 186 55 164 0 chr1 29255123 29255178 -213409175 + GA-rich Low_complexity Low_complexity 1 64 0 1063 83 17 17 chr1 29255180 29255360 -213408993 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 726 181 38 127 chr1 29255403 29255470 -213408883 + MLT1A2 LTR MaLR 124 195 -233 1943 89 0 0 chr1 29255470 29255729 -213408624 - AluSx SINE Alu -1 311 53 726 181 38 127 chr1 29255729 29255924 -213408429 + MLT1A2 LTR MaLR 195 415 -13 826 323 40 18 chr1 29255940 29256308 -213408045 - L2 LINE L2 -263 3009 2632 716 179 43 0 chr1 29256407 29256547 -213407806 + L1MB3 LINE L1 4948 5093 -1053 317 216 0 57 chr1 29256598 29256686 -213407667 + L1MB3 LINE L1 5071 5153 -993 1958 112 34 17 chr1 29256686 29256980 -213407373 - AluSx SINE Alu -13 299 1 1104 79 0 0 chr1 29256980 29257119 -213407234 - AluSg SINE Alu -171 139 1 2586 176 57 13 chr1 29257119 29257158 -213407195 + L1MB3 LINE L1 5143 5179 -1004 1831 123 0 25 chr1 29257158 29257442 -213406911 + AluSx SINE Alu 23 299 -13 2586 176 57 13 chr1 29257442 29257591 -213406762 + L1MB3 LINE L1 5179 5320 -863 1925 158 0 0 chr1 29257591 29257876 -213406477 + AluJb SINE Alu 1 285 -27 2586 176 57 13 chr1 29257876 29258354 -213405999 + L1MB3 LINE L1 5320 5829 -354 1187 137 15 10 chr1 29258361 29258558 -213405795 + AluJb SINE Alu 100 297 -15 2218 152 14 0 chr1 29258559 29258921 -213405432 + L1MB3 LINE L1 5815 6181 -2 311 306 19 9 chr1 29258994 29259102 -213405251 + MIR SINE MIR 53 161 -101 1017 164 16 38 chr1 29259213 29259396 -213404957 - AluJo SINE Alu -133 179 1 1978 147 3 0 chr1 29259853 29260159 -213404194 + AluJb SINE Alu 1 307 -5 1992 121 3 33 chr1 29260159 29260503 -213403850 + AluSx SINE Alu 1 335 0 267 287 139 16 chr1 29260652 29260774 -213403579 - MIR SINE MIR -113 149 13 479 219 176 48 chr1 29261172 29261233 -213403120 - MIR SINE MIR -4 258 206 2157 120 3 0 chr1 29261233 29261542 -213402811 - AluSx SINE Alu -2 310 1 479 219 176 48 chr1 29261542 29261667 -213402686 - MIR SINE MIR -56 206 48 933 143 0 0 chr1 29261771 29261911 -213402442 + FRAM SINE Alu 8 147 -29 396 333 0 0 chr1 29261917 29262034 -213402319 + L2 LINE L2 3156 3272 0 293 274 51 51 chr1 29262034 29262151 -213402202 + L2 LINE L2 3128 3244 -28 256 260 13 26 chr1 29262241 29262318 -213402035 + CT-rich Low_complexity Low_complexity 2 77 0 1095 228 95 26 chr1 29262769 29263116 -213401237 + MLT1C LTR MaLR 94 464 -3 912 163 7 13 chr1 29263131 29263284 -213401069 + FAM SINE Alu 1 40 -9 584 330 19 10 chr1 29263297 29263506 -213400847 + MIR SINE MIR 20 230 -32 391 240 0 66 chr1 29263657 29263778 -213400575 - MIR3 SINE MIR -14 194 82 278 232 85 12 chr1 29264107 29264189 -213400164 - MIR SINE MIR -56 206 119 722 149 130 7 chr1 29264205 29264359 -213399994 + MLT1C LTR MaLR 6 178 -289 688 161 59 0 chr1 29264361 29264479 -213399874 + AluJb SINE Alu 1 125 -187 2365 113 0 0 chr1 29264505 29264814 -213399539 - AluSc SINE Alu 0 309 1 3306 92 8 44 chr1 29264820 29265322 -213399031 + MER1A DNA MER1_type 46 529 0 627 176 206 0 chr1 29265323 29265459 -213398894 + AluJb SINE Alu 126 289 -23 883 205 118 31 chr1 29265467 29265656 -213398697 + MLT1C LTR MaLR 187 405 -62 2399 79 14 0 chr1 29265656 29265948 -213398405 - AluSg SINE Alu -14 296 1 883 205 118 31 chr1 29265948 29266012 -213398341 + MLT1C LTR MaLR 405 462 -5 705 285 21 25 chr1 29266161 29266403 -213397950 - MIR SINE MIR -10 252 12 221 222 0 0 chr1 29266426 29266471 -213397882 - MIR3 SINE MIR -49 159 115 2085 157 3 0 chr1 29267506 29267812 -213396541 + AluJb SINE Alu 5 311 -1 2241 78 0 0 chr1 29267970 29268238 -213396115 + AluSq SINE Alu 1 268 -45 518 299 32 41 chr1 29268290 29268485 -213395868 - MIR SINE MIR -29 233 39 1439 175 138 20 chr1 29268485 29268839 -213395514 + MLT2C1 LTR ERVL 2 397 0 518 299 32 41 chr1 29268839 29268864 -213395489 - MIR SINE MIR -223 39 15 523 256 7 7 chr1 29268949 29269086 -213395267 + MIR SINE MIR 71 207 -55 322 281 89 62 chr1 29269322 29269546 -213394807 - MIR SINE MIR -28 234 5 1886 150 3 39 chr1 29269552 29269858 -213394495 - AluJo SINE Alu -17 295 1 23 0 0 0 chr1 29269929 29269952 -213394401 + AT_rich Low_complexity Low_complexity 1 23 0 747 262 25 5 chr1 29270111 29270313 -213394040 + MIR SINE MIR 28 233 -29 1654 129 30 0 chr1 29270344 29270576 -213393777 + AluJb SINE Alu 1 239 -73 2345 85 3 3 chr1 29270658 29270952 -213393401 - AluSc SINE Alu -15 294 1 251 114 0 0 chr1 29271332 29271376 -213392977 + L2 LINE L2 2934 2977 -336 12138 101 143 33 chr1 29271430 29271626 -213392727 + Tigger1 DNA MER2_type 20 193 -2225 1847 149 10 7 chr1 29271626 29271940 -213392413 - AluJb SINE Alu 0 315 1 12138 101 143 33 chr1 29271940 29272173 -213392180 + Tigger1 DNA MER2_type 193 399 -2019 1945 155 7 3 chr1 29272173 29272476 -213391877 + AluJo SINE Alu 1 304 -8 12138 101 143 33 chr1 29272476 29272513 -213391840 + Tigger1 DNA MER2_type 399 431 -1987 2443 93 3 3 chr1 29272513 29272825 -213391528 + AluSx SINE Alu 1 312 0 12138 101 143 33 chr1 29272825 29273177 -213391176 + Tigger1 DNA MER2_type 431 743 -1675 2478 88 0 0 chr1 29273177 29273474 -213390879 - AluSx SINE Alu -15 297 1 966 168 6 12 chr1 29273474 29273641 -213390712 - FRAM SINE Alu 0 166 1 12138 101 143 33 chr1 29273641 29274146 -213390207 + Tigger1 DNA MER2_type 743 1191 -1227 1723 157 26 42 chr1 29274146 29274459 -213389894 + AluJo SINE Alu 1 308 -4 12138 101 143 33 chr1 29274459 29274688 -213389665 + Tigger1 DNA MER2_type 1191 1394 -1024 948 164 61 0 chr1 29274688 29274853 -213389500 + FAM SINE Alu 1 175 0 2080 149 0 3 chr1 29274861 29275169 -213389184 - AluJb SINE Alu -5 307 1 12138 101 143 33 chr1 29275169 29275646 -213388707 + Tigger1 DNA MER2_type 1400 1823 -595 1961 142 27 3 chr1 29275646 29275941 -213388412 - AluJb SINE Alu -10 302 1 12138 101 143 33 chr1 29275941 29276056 -213388297 + Tigger1 DNA MER2_type 1823 2418 0 500 198 54 0 chr1 29276131 29276242 -213388111 + L2 LINE L2 3158 3274 -39 289 229 174 18 chr1 29276252 29276361 -213387992 - MIR SINE MIR -87 175 50 2390 93 0 0 chr1 29276498 29276789 -213387564 + AluSg SINE Alu 1 291 -19 274 277 122 47 chr1 29276863 29277011 -213387342 + MIR3 SINE MIR 14 172 -36 610 284 38 38 chr1 29277026 29277048 -213387305 + MIR SINE MIR 13 34 -228 2404 72 0 10 chr1 29277048 29277341 -213387012 + AluY SINE Alu 1 290 -21 610 284 38 38 chr1 29277341 29277554 -213386799 + MIR SINE MIR 33 248 -14 2465 70 3 16 chr1 29277564 29277879 -213386474 + AluY SINE Alu 1 311 0 2303 113 0 3 chr1 29277984 29278286 -213386067 - AluSx SINE Alu -11 301 1 2286 110 3 10 chr1 29278353 29278488 -213385865 + AluSx SINE Alu 1 135 -177 2271 89 3 17 chr1 29278488 29278819 -213385534 + AluSg SINE Alu 1 310 0 2286 110 3 10 chr1 29278819 29278991 -213385362 + AluSx SINE Alu 135 306 -6 2044 113 0 31 chr1 29279412 29279684 -213384669 + AluSx SINE Alu 21 285 -27 237 65 0 0 chr1 29279684 29279715 -213384638 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 2044 113 0 31 chr1 29279715 29279735 -213384618 + AluSx SINE Alu 285 304 -8 413 255 20 0 chr1 29279812 29279914 -213384439 - L3 LINE CR1 -98 1479 1376 264 263 105 94 chr1 29279914 29279933 -213384420 + L1ME4a LINE L1 5650 5667 -454 2395 76 10 0 chr1 29279933 29280236 -213384117 + AluSp SINE Alu 1 306 -7 264 263 105 94 chr1 29280236 29280294 -213384059 + L1ME4a LINE L1 5667 5723 -398 829 148 0 0 chr1 29280294 29280422 -213383931 - FLAM_C SINE Alu -3 130 3 264 263 105 94 chr1 29280422 29280645 -213383708 + L1ME4a LINE L1 5723 5942 -179 772 150 0 8 chr1 29280645 29280772 -213383581 + AluJo/FLAM SINE Alu 2 127 -175 2278 119 0 16 chr1 29280774 29281092 -213383261 + AluSq SINE Alu 1 313 0 264 263 105 94 chr1 29281092 29281253 -213383100 + L1ME4a LINE L1 5942 6121 0 539 78 0 13 chr1 29281282 29281359 -213382994 + AluS SINE Alu 2 77 -235 1629 173 40 14 chr1 29281359 29281637 -213382716 - AluJo SINE Alu -27 285 1 2248 104 7 0 chr1 29281701 29281988 -213382365 + AluSx SINE Alu 15 303 -9 710 266 38 30 chr1 29282075 29282312 -213382041 - MIR SINE MIR -11 251 13 323 255 91 44 chr1 29282440 29282607 -213381746 + MIR SINE MIR 16 189 -63 398 233 252 0 chr1 29282883 29282986 -213381367 - FLAM_A SINE Alu -4 129 1 181 329 31 62 chr1 29283630 29283791 -213380562 + L2 LINE L2 2929 3084 -188 252 274 137 33 chr1 29284068 29284162 -213380191 - MIR SINE MIR -34 228 145 2179 82 3 49 chr1 29284162 29284467 -213379886 + AluSx SINE Alu 1 291 -21 252 274 137 33 chr1 29284467 29284525 -213379828 - MIR SINE MIR -117 145 60 401 272 95 27 chr1 29284861 29285008 -213379345 - MIR SINE MIR -52 210 54 364 260 166 6 chr1 29286136 29286305 -213378048 - MIR SINE MIR -60 202 7 1752 147 50 4 chr1 29286777 29287056 -213377297 + AluJb SINE Alu 1 292 -20 272 252 44 124 chr1 29287139 29287315 -213377038 + MIR3 SINE MIR 30 189 -28 681 258 35 5 chr1 29287795 29287993 -213376360 - MIR SINE MIR -23 239 36 32 43 0 0 chr1 29289881 29289927 -213374426 + GC_rich Low_complexity Low_complexity 1 46 0 721 272 0 35 chr1 29290225 29290453 -213373900 + MIR SINE MIR 30 249 -13 379 329 100 42 chr1 29290485 29290795 -213373558 - L2 LINE L2 0 3272 2945 274 198 189 38 chr1 29291013 29291119 -213373234 - MIR SINE MIR -10 252 131 217 292 15 0 chr1 29291204 29291269 -213373084 + L2 LINE L2 3247 3312 -1 447 325 59 0 chr1 29291703 29291872 -213372481 + L2 LINE L2 2882 3060 -212 687 187 0 7 chr1 29292010 29292149 -213372204 + L1PA16 LINE L1 6022 6159 -7 1631 175 6 60 chr1 29292149 29292483 -213371870 + AluJb SINE Alu 1 312 0 2176 102 0 54 chr1 29292640 29292955 -213371398 + AluSq SINE Alu 1 298 -15 2237 125 6 3 chr1 29293020 29293331 -213371022 + AluSx SINE Alu 1 312 0 2330 91 0 23 chr1 29293463 29293771 -213370582 - AluSc SINE Alu -8 301 1 747 133 31 8 chr1 29293781 29293909 -213370444 - FLAM_C SINE Alu 0 133 3 449 266 227 20 chr1 29293985 29294188 -213370165 - MIR SINE MIR -12 250 6 2324 75 7 0 chr1 29294312 29294640 -213369713 - AluSp SINE Alu 0 330 1 2293 97 0 0 chr1 29295100 29295412 -213368941 + AluSx SINE Alu 1 312 0 640 289 32 32 chr1 29295550 29295731 -213368622 + L2 LINE L2 2414 2597 -717 2088 123 3 0 chr1 29295731 29296016 -213368337 - AluSx SINE Alu -6 306 21 640 289 32 32 chr1 29296016 29296087 -213368266 + L2 LINE L2 2596 2666 -648 398 238 126 28 chr1 29296247 29296390 -213367963 + MIR SINE MIR 13 169 -93 774 90 0 0 chr1 29296719 29296819 -213367534 + THE1B LTR MaLR 5 104 -260 1104 62 0 0 chr1 29296819 29296948 -213367405 - AluY SINE Alu -182 129 1 305 95 0 0 chr1 29296948 29296990 -213367363 + THE1A LTR MaLR 314 355 0 257 309 56 43 chr1 29297531 29297693 -213366660 + MLT1L LTR MaLR 6 169 -446 1793 194 121 50 chr1 29297693 29298189 -213366164 + MLT1H LTR MaLR 1 531 -18 927 243 171 35 chr1 29298217 29298527 -213365826 + MLT1L LTR MaLR 183 554 -61 2279 113 0 0 chr1 29298527 29298820 -213365533 + AluSx SINE Alu 1 293 -19 927 243 171 35 chr1 29298820 29298883 -213365470 + MLT1L LTR MaLR 554 607 -8 376 280 76 81 chr1 29299016 29299132 -213365221 + MIR SINE MIR 40 156 -106 1519 173 0 12 chr1 29299132 29299381 -213364972 + AluJo SINE Alu 16 261 -51 376 280 76 81 chr1 29299381 29299475 -213364878 + MIR SINE MIR 156 249 -13 2221 92 0 67 chr1 29300637 29300951 -213363402 + AluSx SINE Alu 1 293 -19 541 248 7 15 chr1 29300965 29301102 -213363251 - MIR3 SINE MIR -39 169 34 320 306 30 22 chr1 29301148 29301282 -213363071 - MIR SINE MIR -25 237 103 252 241 17 0 chr1 29301342 29301400 -213362953 + MIR3 SINE MIR 114 172 -36 1816 184 0 0 chr1 29301893 29302186 -213362167 - AluJo SINE Alu -19 293 1 1640 161 19 47 chr1 29302186 29302450 -213361903 + MLT2D LTR ERVL 100 355 -59 2299 104 0 0 chr1 29302450 29302747 -213361606 + AluY SINE Alu 1 297 -14 1640 161 19 47 chr1 29302747 29302804 -213361549 + MLT2D LTR ERVL 355 412 -2 295 289 19 39 chr1 29302814 29302918 -213361435 - L2 LINE L2 -50 3263 3162 2151 127 0 3 chr1 29303705 29303996 -213360357 + AluSx SINE Alu 1 290 -22 2441 91 3 0 chr1 29304084 29304392 -213359961 - AluSp SINE Alu -4 309 1 2230 97 17 3 chr1 29305973 29306262 -213358091 + AluSx SINE Alu 2 294 -18 2235 133 0 0 chr1 29306547 29306855 -213357498 - AluSx SINE Alu -3 309 2 1991 141 7 3 chr1 29307048 29307345 -213357008 + AluJb SINE Alu 1 298 -14 38 85 0 0 chr1 29307358 29307452 -213356901 + AT_rich Low_complexity Low_complexity 1 94 0 2237 135 0 0 chr1 29308361 29308658 -213355695 + AluSx SINE Alu 1 297 -15 449 273 28 7 chr1 29308752 29308895 -213355458 + LTR67 LTR ERVL 411 556 -1 1799 134 78 0 chr1 29309372 29309655 -213354698 - AluJo SINE Alu -7 305 1 1352 191 35 11 chr1 29309655 29309937 -213354416 + L1ME3 LINE L1 5858 6146 -16 1742 144 12 0 chr1 29309937 29310194 -213354159 + AluJb SINE Alu 38 297 -15 2301 103 7 3 chr1 29310216 29310517 -213353836 - AluSx SINE Alu -10 302 1 2330 110 3 0 chr1 29310739 29311049 -213353304 - AluSp SINE Alu -2 311 1 285 296 143 67 chr1 29311098 29311321 -213353032 - MIR SINE MIR -11 251 12 232 309 100 9 chr1 29311432 29311542 -213352811 - MIR SINE MIR -71 137 18 2303 108 0 3 chr1 29311685 29311990 -213352363 + AluSx SINE Alu 1 304 -8 327 339 123 31 chr1 29312113 29312464 -213351889 - L2 LINE L2 0 3272 2890 229 231 154 22 chr1 29312441 29312532 -213351821 + L2 LINE L2 3197 3299 -14 * 273 75 0 0 chr1 29312538 29312578 -213351775 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 579 319 208 31 chr1 29312586 29312690 -213351663 - L2 LINE L2 -433 2881 2797 2455 74 3 3 chr1 29312690 29312987 -213351366 - AluSp SINE Alu -15 298 2 579 319 208 31 chr1 29312987 29313631 -213350722 - L2 LINE L2 -517 2797 2000 293 269 99 23 chr1 29314353 29314524 -213349829 - L1ME LINE L1 -261 5860 5677 2096 57 40 27 chr1 29314749 29315046 -213349307 - AluY SINE Alu -2 309 9 2211 105 7 0 chr1 29315557 29315863 -213348490 - AluSq SINE Alu -5 308 1 201 320 244 5 chr1 29315875 29316072 -213348281 + L3 LINE CR1 1289 1532 -45 21 71 0 0 chr1 29316303 29316345 -213348008 + AT_rich Low_complexity Low_complexity 1 42 0 1873 153 7 0 chr1 29316385 29316685 -213347668 + AluSx SINE Alu 1 302 -10 1087 99 13 0 chr1 29316686 29316838 -213347515 + AluSg/x SINE Alu 137 290 -22 180 179 0 0 chr1 29317508 29317536 -213346817 + L2 LINE L2 3258 3285 -28 325 240 150 0 chr1 29317566 29317666 -213346687 - MIR SINE MIR -115 147 33 989 167 167 83 chr1 29317777 29317868 -213346485 - MER63 DNA MER1_type -208 853 771 1876 120 27 17 chr1 29317868 29318168 -213346185 - AluSg SINE Alu -7 303 1 989 167 167 83 chr1 29318168 29318341 -213346012 - MER63 DNA MER1_type -290 771 553 1661 160 10 10 chr1 29318341 29318629 -213345724 + AluJo SINE Alu 7 294 -18 989 167 167 83 chr1 29318629 29318699 -213345654 - MER63 DNA MER1_type -508 553 490 1451 159 10 92 chr1 29318813 29319127 -213345226 + AluJb SINE Alu 1 288 -24 2217 103 0 3 chr1 29319271 29319581 -213344772 - AluSx SINE Alu -3 309 1 288 307 157 0 chr1 29319670 29319810 -213344543 - MIR SINE MIR -10 252 91 1914 122 0 7 chr1 29319820 29320114 -213344239 + AluSx SINE Alu 1 292 -20 1791 112 72 0 chr1 29320116 29320394 -213343959 + AluSq SINE Alu 1 298 -15 863 130 80 49 chr1 29320394 29320556 -213343797 + AluSg/x SINE Alu 134 300 -12 191 281 47 94 chr1 29320557 29320685 -213343668 - L2 LINE L2 -662 2652 2531 206 171 139 108 chr1 29320708 29320837 -213343516 - L2 LINE L2 -916 2398 2266 479 292 56 52 chr1 29320919 29321152 -213343201 - MIR SINE MIR 0 262 29 1107 164 103 0 chr1 29321287 29321501 -213342852 + MER46A DNA MER2_type 1 236 0 225 0 0 0 chr1 29322359 29322384 -213341969 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 321 300 94 38 chr1 29323267 29323427 -213340926 - L1ME4a LINE L1 -45 6076 5908 198 321 223 23 chr1 29323450 29323665 -213340688 - MIR SINE MIR 0 262 5 1097 189 161 0 chr1 29323693 29323942 -213340411 + AluJo SINE Alu 1 289 -23 202 250 29 88 chr1 29324273 29324341 -213340012 - MIR SINE MIR -114 94 30 198 270 54 40 chr1 29324474 29324548 -213339805 - MER5B DNA MER1_type -23 155 81 370 280 56 0 chr1 29324654 29324761 -213339592 + MER5A DNA MER1_type 69 181 -8 1656 124 71 4 chr1 29324974 29325240 -213339113 - Tigger3b DNA MER2_type 0 1231 948 2043 122 0 3 chr1 29325243 29325546 -213338807 + AluSx SINE Alu 1 302 -10 2752 157 82 6 chr1 29325547 29325841 -213338512 - Tigger3b DNA MER2_type -2461 567 297 306 0 0 0 chr1 29325841 29325875 -213338478 + (TG)n Simple_repeat Simple_repeat 1 34 0 1923 92 26 4 chr1 29325875 29326147 -213338206 - AluY SINE Alu -33 278 1 1955 126 3 10 chr1 29326147 29326439 -213337914 - AluSx SINE Alu -21 291 1 2752 157 82 6 chr1 29326439 29326666 -213337687 - Tigger3b DNA MER2_type -2730 298 4 198 0 0 0 chr1 29326666 29326688 -213337665 + (TG)n Simple_repeat Simple_repeat 2 23 0 1529 177 19 29 chr1 29326689 29326999 -213337354 - AluJb SINE Alu -5 307 1 423 202 158 9 chr1 29327010 29327021 -213337332 - AluJo SINE Alu -177 135 127 2035 80 22 4 chr1 29327021 29327297 -213337056 + AluSp SINE Alu 6 286 -27 423 202 158 9 chr1 29327297 29327399 -213336954 - AluJo SINE Alu -185 127 5 22 0 0 0 chr1 29327406 29327428 -213336925 + AT_rich Low_complexity Low_complexity 1 22 0 2359 56 0 0 chr1 29327672 29327959 -213336394 + AluY SINE Alu 1 287 -24 185 83 0 0 chr1 29328379 29328403 -213335950 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1796 121 53 14 chr1 29328406 29328688 -213335665 - AluSx SINE Alu -19 293 1 1025 131 6 23 chr1 29328844 29329003 -213335350 - AluSq SINE Alu -21 292 135 2105 112 0 13 chr1 29329003 29329316 -213335037 - AluSc SINE Alu 0 309 1 1025 131 6 23 chr1 29329316 29329331 -213335022 - AluSq SINE Alu -178 135 121 245 114 0 0 chr1 29329365 29329409 -213334944 - L1MA7 LINE L1 -14 6277 6234 312 181 145 12 chr1 29329409 29329492 -213334861 - L1M4 LINE L1 -2927 3219 3126 2264 76 3 16 chr1 29329499 29329815 -213334538 - AluSp SINE Alu -1 312 1 2011 112 6 19 chr1 29329825 29330137 -213334216 - AluSg1 SINE Alu -1 308 1 500 86 14 0 chr1 29330137 29330207 -213334146 - AluSq/x SINE Alu -176 137 67 1044 164 5 15 chr1 29330207 29330408 -213333945 - AluSx SINE Alu -113 199 1 883 147 19 6 chr1 29330422 29330578 -213333775 - FAM SINE Alu -2 47 1 1294 125 121 12 chr1 29330624 29330864 -213333489 - AluJb SINE Alu -46 266 1 1261 174 47 74 chr1 29330998 29331179 -213333174 - AluJo SINE Alu -12 290 119 198 0 0 0 chr1 29331179 29331201 -213333152 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1261 174 47 74 chr1 29331201 29331317 -213333036 - AluJo SINE Alu -183 119 1 981 225 66 38 chr1 29331344 29331664 -213332689 - L1MC4 LINE L1 -94 7948 7620 1267 173 46 59 chr1 29331669 29331975 -213332378 - AluJb SINE Alu -10 302 1 1098 173 117 4 chr1 29332022 29332271 -213332082 - L1MC4 LINE L1 -589 7453 7177 293 109 62 47 chr1 29332272 29332336 -213332017 - L1MC4 LINE L1 -1024 7018 6954 1514 177 3 38 chr1 29332384 29332701 -213331652 - AluJo SINE Alu -6 306 1 2323 63 0 0 chr1 29333044 29333366 -213330987 - AluY SINE Alu 0 322 1 238 274 27 14 chr1 29333442 29333515 -213330838 + MIR SINE MIR 74 147 -115 1656 78 0 5 chr1 29333576 29333795 -213330558 - AluSg/x SINE Alu -10 302 85 1860 105 10 64 chr1 29333891 29334204 -213330149 + AluSx SINE Alu 1 296 -16 181 281 22 45 chr1 29334265 29334354 -213329999 - MIR SINE MIR -115 147 61 2074 96 0 42 chr1 29335411 29335724 -213328629 - AluSq SINE Alu -13 300 1 1882 128 20 7 chr1 29336095 29336400 -213327953 + AluSg SINE Alu 1 309 -1 2641 209 143 15 chr1 29336419 29336532 -213327821 + L1MC4a LINE L1 6795 6892 -921 1148 188 156 0 chr1 29336532 29336782 -213327571 - AluJo SINE Alu -13 289 1 2641 209 143 15 chr1 29336782 29337059 -213327294 + L1MC4a LINE L1 6892 7132 -681 1215 190 122 4 chr1 29337059 29337322 -213327031 + AluJo SINE Alu 2 295 -7 2641 209 143 15 chr1 29337322 29337880 -213326473 + L1MC4a LINE L1 7132 7807 -6 1034 133 19 0 chr1 29337965 29338123 -213326230 - AluSg/x SINE Alu -55 257 97 1905 135 16 13 chr1 29338760 29339071 -213325282 + AluSx SINE Alu 1 312 0 696 84 72 18 chr1 29339102 29339269 -213325084 + GA-rich Low_complexity Low_complexity 4 179 0 221 231 0 0 chr1 29339270 29339309 -213325044 + polypurine Low_complexity Low_complexity 4 42 0 1882 122 35 3 chr1 29339502 29339788 -213324565 - AluSx SINE Alu -17 295 1 195 229 125 0 chr1 29340046 29340094 -213324259 + L2 LINE L2 3258 3311 -2 221 171 0 0 chr1 29340943 29340984 -213323369 + T-rich Low_complexity Low_complexity 1 41 0 24 53 0 0 chr1 29341264 29341302 -213323051 + AT_rich Low_complexity Low_complexity 1 38 0 379 253 227 20 chr1 29341539 29341689 -213322664 + MIR SINE MIR 34 214 -48 1311 76 22 5 chr1 29341893 29342078 -213322275 - AluSg/x SINE Alu -15 297 110 1708 101 4 8 chr1 29342179 29342427 -213321926 - AluY SINE Alu -64 247 1 1687 147 7 23 chr1 29342431 29342738 -213321615 - AluJb SINE Alu 0 312 11 1745 78 109 4 chr1 29342765 29343021 -213321332 - AluSc SINE Alu -26 283 1 1034 83 0 0 chr1 29343021 29343154 -213321199 - AluSc SINE Alu -176 133 1 1272 171 0 0 chr1 29343191 29343402 -213320951 - AluJb SINE Alu -99 213 3 1942 121 24 10 chr1 29343413 29343710 -213320643 - AluSx SINE Alu -11 301 1 1588 139 0 0 chr1 29343721 29343965 -213320388 - AluSq SINE Alu -17 296 53 519 298 140 45 chr1 29344191 29344425 -213319928 + L2 LINE L2 2524 2734 -579 1931 125 63 0 chr1 29344425 29344712 -213319641 - AluSg SINE Alu -5 305 1 519 298 140 45 chr1 29344712 29345131 -213319222 + L2 LINE L2 2734 3299 -14 669 198 0 0 chr1 29345427 29345548 -213318805 + FRAM SINE Alu 1 121 -55 186 43 0 0 chr1 29345565 29345588 -213318765 + (CAA)n Simple_repeat Simple_repeat 2 24 0 189 133 0 0 chr1 29345687 29345717 -213318636 + MIR SINE MIR 110 139 -69 1018 211 5 0 chr1 29345731 29345925 -213318428 - LTR44 LTR ERV1 -3 516 322 2317 79 13 0 chr1 29345930 29346234 -213318119 - AluSp SINE Alu -5 308 1 2036 114 0 3 chr1 29346234 29346531 -213317822 - AluY SINE Alu -15 296 1 562 204 210 0 chr1 29346537 29346713 -213317640 + L2 LINE L2 1295 1507 -1807 528 197 299 14 chr1 29346717 29346864 -213317489 + MER5A DNA MER1_type 1 189 0 2514 250 124 30 chr1 29346868 29346952 -213317401 + L2 LINE L2 1514 1589 -1725 1633 147 39 7 chr1 29346952 29347258 -213317095 + AluJb SINE Alu 1 312 0 2514 250 124 30 chr1 29347258 29347379 -213316974 + L2 LINE L2 1589 1697 -1617 1823 174 7 0 chr1 29347379 29347689 -213316664 - AluJb SINE Alu 0 312 1 2514 250 124 30 chr1 29347689 29348241 -213316112 + L2 LINE L2 1697 2375 -939 2232 92 7 0 chr1 29348241 29348536 -213315817 - AluSx SINE Alu -15 297 1 2514 250 124 30 chr1 29348536 29348696 -213315657 + L2 LINE L2 2375 2519 -795 1950 167 61 63 chr1 29348710 29349170 -213315183 - LTR2B LTR ERV1 0 490 32 927 281 105 16 chr1 29349177 29349693 -213314660 + L2 LINE L2 2557 3110 -203 297 333 92 7 chr1 29349893 29350034 -213314319 + MIR3 SINE MIR 20 172 -36 246 272 22 11 chr1 29350044 29350136 -213314217 + L2 LINE L2 2500 2592 -722 421 70 35 0 chr1 29350142 29350199 -213314154 - AluSg/x SINE Alu -90 222 164 2247 74 7 10 chr1 29350199 29350497 -213313856 - AluY SINE Alu -14 297 1 1375 122 15 0 chr1 29350678 29350883 -213313470 + AluSx SINE Alu 61 268 -44 259 329 37 0 chr1 29351123 29351205 -213313148 + L2 LINE L2 3139 3223 -49 2363 68 0 0 chr1 29351446 29351754 -213312599 + AluY SINE Alu 1 308 -3 218 325 167 8 chr1 29351836 29351962 -213312391 - L2 LINE L2 -182 3090 2945 1055 108 25 0 chr1 29352066 29352256 -213312097 - AluSg/x SINE Alu 0 312 119 1862 121 10 13 chr1 29352380 29352686 -213311667 + AluSx SINE Alu 4 308 -4 225 330 130 9 chr1 29353106 29353221 -213311132 + L3 LINE CR1 1431 1559 -18 1032 108 88 159 chr1 29353267 29353426 -213310927 + MER46B DNA MER2_type 2 171 -2560 2102 82 7 0 chr1 29353426 29353732 -213310621 + AluY SINE Alu 1 308 0 1032 108 88 159 chr1 29353732 29353766 -213310587 + MER46B DNA MER2_type 171 46 -2685 1726 138 50 7 chr1 29353766 29354049 -213310304 + AluSg SINE Alu 1 295 -15 1032 108 88 159 chr1 29354049 29354149 -213310204 + MER46B DNA MER2_type 45 151 -85 2053 132 0 7 chr1 29354258 29354568 -213309785 - AluSx SINE Alu -4 308 1 2192 93 7 0 chr1 29354579 29354880 -213309473 - AluY SINE Alu -5 306 4 1804 282 30 9 chr1 29354919 29355458 -213308895 - L2 LINE L2 -602 2712 2163 1965 143 0 0 chr1 29355502 29355795 -213308558 - AluJb SINE Alu -14 298 6 2096 89 0 0 chr1 29355795 29356065 -213308288 - AluY SINE Alu -40 271 1 1242 114 0 30 chr1 29356068 29356270 -213308083 - AluSq SINE Alu -18 295 100 2109 106 0 7 chr1 29356371 29356664 -213307689 - AluSx SINE Alu -21 291 1 324 0 0 0 chr1 29356878 29356914 -213307439 + (TG)n Simple_repeat Simple_repeat 1 36 0 634 185 68 48 chr1 29356915 29357061 -213307292 - FRAM SINE Alu -30 146 1 1527 170 3 36 chr1 29357071 29357234 -213307119 - AluJo SINE Alu -16 296 146 2080 125 3 0 chr1 29357234 29357530 -213306823 - AluSx SINE Alu -15 297 1 1527 170 3 36 chr1 29357530 29357672 -213306681 - AluJo SINE Alu -166 146 1 231 156 111 0 chr1 29357737 29357782 -213306571 - L2 LINE L2 0 3313 3264 1203 176 5 5 chr1 29357900 29358121 -213306232 + AluJb SINE Alu 82 302 -10 406 150 0 0 chr1 29358150 29358210 -213306143 + AluS SINE Alu 1 60 -242 1856 110 27 0 chr1 29358310 29358573 -213305780 - AluSc SINE Alu -39 270 1 769 184 102 0 chr1 29358576 29358723 -213305630 - FRAM SINE Alu -17 159 1 2049 125 0 16 chr1 29358995 29359308 -213305045 - AluJb SINE Alu -4 308 1 1889 141 7 0 chr1 29359487 29359786 -213304567 + AluSx SINE Alu 2 302 -10 2247 81 0 14 chr1 29360317 29360612 -213303741 + AluSg SINE Alu 2 292 -18 1324 152 65 96 chr1 29360724 29361046 -213303307 + AluSx SINE Alu 1 312 0 502 273 86 36 chr1 29361046 29361266 -213303087 - L2 LINE L2 -93 3220 2990 1866 112 14 27 chr1 29361272 29361568 -213302785 + AluSq SINE Alu 1 292 -21 1975 99 41 7 chr1 29361570 29361863 -213302490 + AluSg SINE Alu 1 303 -7 1676 114 148 19 chr1 29361930 29362194 -213302159 + AluSx SINE Alu 1 298 -4 285 268 0 0 chr1 29362347 29362403 -213301950 - Charlie8 DNA MER1_type -2215 202 147 2205 99 6 16 chr1 29362414 29362727 -213301626 - AluSg SINE Alu 0 310 1 1785 158 3 7 chr1 29362728 29363026 -213301327 - AluJb SINE Alu -15 297 1 259 203 145 0 chr1 29363027 29363096 -213301257 + L1ME LINE L1 5690 5768 -402 2607 36 0 0 chr1 29363117 29363426 -213300927 - AluY SINE Alu -2 309 1 450 48 16 0 chr1 29363535 29363598 -213300755 - LTR9B LTR ERV1 -135 509 446 2171 84 7 0 chr1 29363602 29363925 -213300428 - AluY SINE Alu 0 311 4 1315 167 159 0 chr1 29363947 29364198 -213300155 - AluSx SINE Alu -21 291 1 1737 101 97 0 chr1 29364207 29364503 -213299850 - AluSc SINE Alu 0 321 1 1958 129 3 0 chr1 29364503 29364797 -213299556 - AluSq SINE Alu -18 295 1 2083 92 0 20 chr1 29365122 29365427 -213298926 - AluSp SINE Alu -14 299 1 768 129 0 40 chr1 29365428 29365552 -213298801 + FLAM_C SINE Alu 11 129 -14 205 318 77 125 chr1 29365694 29365774 -213298579 - L2 LINE L2 -8 3264 3182 2038 124 0 3 chr1 29365774 29366072 -213298281 + AluSc SINE Alu 1 297 -12 205 318 77 125 chr1 29366072 29366090 -213298263 - L2 LINE L2 -90 3182 3165 1934 117 33 0 chr1 29366090 29366363 -213297990 + AluSp SINE Alu 1 282 -31 189 0 0 0 chr1 29366366 29366387 -213297966 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 205 318 77 125 chr1 29366387 29366594 -213297759 - L2 LINE L2 -109 3163 2969 730 123 0 0 chr1 29366594 29366700 -213297653 + AluSg/x SINE Alu 187 292 -17 2239 88 0 3 chr1 29367026 29367323 -213297030 - AluSp SINE Alu -17 296 1 181 281 22 45 chr1 29367659 29367748 -213296605 + MIR SINE MIR 61 147 -115 1860 105 10 64 chr1 29367809 29368122 -213296231 - AluSx SINE Alu -16 296 1 1685 73 0 5 chr1 29368218 29368437 -213295916 + AluSg/x SINE Alu 83 300 -10 238 274 27 14 chr1 29368498 29368571 -213295782 - MIR SINE MIR -115 147 74 2298 69 7 0 chr1 29368647 29368953 -213295400 + AluY SINE Alu 1 308 -3 1889 146 0 3 chr1 29369032 29369326 -213295027 + AluJb SINE Alu 1 293 -19 231 91 0 0 chr1 29369850 29369883 -213294470 - L2 LINE L2 -165 3148 3116 804 200 100 42 chr1 29369994 29370254 -213294099 + L2 LINE L2 970 1244 -2070 1135 52 13 19 chr1 29370295 29370450 -213293903 - AluY SINE Alu -16 295 142 181 196 155 93 chr1 29370699 29370777 -213293576 - MIR SINE MIR -79 183 96 1993 123 7 7 chr1 29370777 29371078 -213293275 + AluSx SINE Alu 3 303 -9 181 196 155 93 chr1 29371078 29371096 -213293257 - MIR SINE MIR -166 96 81 727 205 34 39 chr1 29371272 29371477 -213292876 + MER63A DNA MER1_type 4 207 -3 2068 98 9 19 chr1 29371651 29371966 -213292387 - AluSp SINE Alu -1 312 1 1034 185 0 0 chr1 29372440 29372613 -213291740 - FRAM SINE Alu -11 165 1 339 141 0 0 chr1 29372633 29372711 -213291642 - Charlie5 DNA MER1_type -82 2530 2453 2475 57 0 0 chr1 29372719 29373019 -213291334 + AluY SINE Alu 1 300 -11 2037 70 0 4 chr1 29373029 29373288 -213291065 + L1PA8A LINE L1 5845 6102 -29 180 0 0 0 chr1 29373296 29373316 -213291037 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1243 152 0 0 chr1 29373645 29373843 -213290510 - AluSg/x SINE Alu -10 300 103 405 159 0 14 chr1 29373843 29373912 -213290441 + AluS SINE Alu 225 292 -17 473 100 57 0 chr1 29374035 29374105 -213290248 - HERVL LTR ERVL -3940 1714 1641 662 188 7 51 chr1 29374106 29374244 -213290109 + FLAM_C SINE Alu 2 133 0 958 110 7 14 chr1 29374249 29374394 -213289959 + AluSq/x SINE Alu 1 144 -168 2122 122 0 3 chr1 29374394 29374697 -213289656 + AluSq SINE Alu 1 302 -11 1676 173 0 20 chr1 29374700 29374838 -213289515 + AluSx SINE Alu 1 140 -172 1787 141 48 0 chr1 29374838 29375129 -213289224 + AluSx SINE Alu 1 305 -7 1676 173 0 20 chr1 29375129 29375296 -213289057 + AluSx SINE Alu 140 300 -12 2545 141 0 18 chr1 29375315 29375699 -213288654 - HERVL LTR ERVL -4074 1580 1204 1019 140 28 6 chr1 29375706 29375884 -213288469 + AluSg/x SINE Alu 116 297 -15 1694 80 13 4 chr1 29375884 29376110 -213288243 + AluSg SINE Alu 1 228 -82 1018 170 0 49 chr1 29376110 29376334 -213288019 + AluY SINE Alu 94 306 -5 1966 119 0 3 chr1 29376343 29376656 -213287697 + AluSq SINE Alu 1 312 0 1700 185 3 31 chr1 29376657 29377013 -213287340 + L1MB4 LINE L1 5605 5950 -233 1781 142 0 43 chr1 29377014 29377317 -213287036 + AluSx SINE Alu 1 290 -22 299 83 0 0 chr1 29377318 29377366 -213286987 + L1MB4 LINE L1 6133 6180 0 221 244 39 64 chr1 29377493 29377571 -213286782 + MIR SINE MIR 187 262 0 290 220 20 80 chr1 29377571 29377671 -213286682 + LTR44 LTR ERV1 1 94 -425 347 102 0 0 chr1 29377772 29377821 -213286532 + Alu SINE Alu 249 297 -3 419 286 131 99 chr1 29378297 29378419 -213285934 + L2 LINE L2 2207 2324 -990 2345 55 7 0 chr1 29378419 29378710 -213285643 - AluSp SINE Alu -20 293 1 419 286 131 99 chr1 29378710 29379205 -213285148 + L2 LINE L2 2324 2844 -470 486 0 0 0 chr1 29379324 29379378 -213284975 + (TG)n Simple_repeat Simple_repeat 1 54 0 1688 170 3 3 chr1 29379378 29379654 -213284699 - AluJo SINE Alu -28 284 6 367 268 91 72 chr1 29379739 29379948 -213284405 + L2 LINE L2 3099 3311 -2 2102 110 28 0 chr1 29380065 29380356 -213283997 - AluSg SINE Alu -11 299 1 1865 161 0 0 chr1 29380356 29380654 -213283699 - AluJo SINE Alu -14 298 1 2244 103 0 0 chr1 29380732 29381034 -213283319 - AluSg SINE Alu -8 302 1 2334 86 0 0 chr1 29381570 29381874 -213282479 - AluSx SINE Alu -8 304 1 476 254 70 0 chr1 29382561 29382675 -213281678 - L2 LINE L2 -1 3271 3150 1357 214 10 14 chr1 29382703 29382998 -213281355 + AluJo SINE Alu 1 294 -18 504 131 61 0 chr1 29383004 29383103 -213281250 + Charlie4 DNA MER1_type 1824 1928 -33 181 324 56 14 chr1 29383248 29383319 -213281034 - L2 LINE L2 -216 3056 2983 2325 68 10 0 chr1 29384306 29384600 -213279753 + AluSp SINE Alu 1 297 -16 1339 81 0 0 chr1 29385168 29385342 -213279011 + AluY SINE Alu 123 296 -15 985 18 0 0 chr1 29385547 29385660 -213278693 + L1PA5 LINE L1 6038 6150 -4 2201 57 10 29 chr1 29385703 29386055 -213278298 + AluY SINE Alu 1 311 0 2167 80 21 3 chr1 29386103 29386391 -213277962 - AluSq SINE Alu -20 293 1 197 33 33 0 chr1 29386446 29386476 -213277877 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1424 129 7 100 chr1 29386481 29386790 -213277563 - AluJb SINE Alu -29 283 4 731 172 112 18 chr1 29386794 29386963 -213277390 + AluJo SINE Alu 121 305 -7 1825 66 45 63 chr1 29387454 29387598 -213276755 + AluSc SINE Alu 2 147 -162 2146 92 0 0 chr1 29387598 29387905 -213276448 + AluSq SINE Alu 1 307 0 1825 66 45 63 chr1 29387905 29388072 -213276281 + AluSc SINE Alu 147 309 0 22 0 0 0 chr1 29389045 29389067 -213275286 + GC_rich Low_complexity Low_complexity 1 22 0 43 116 0 0 chr1 29389102 29389301 -213275052 + GC_rich Low_complexity Low_complexity 1 199 0 2219 89 3 0 chr1 29389421 29389712 -213274641 + AluSp SINE Alu 1 292 -21 21747 86 4 15 chr1 29389713 29390264 -213274089 + HERVL LTR ERVL 1722 2277 -3377 2064 123 0 3 chr1 29390264 29390565 -213273788 + AluSq SINE Alu 1 300 -13 21747 86 4 15 chr1 29390565 29392333 -213272020 + HERVL LTR ERVL 2277 4008 -1646 2217 93 0 7 chr1 29392333 29392634 -213271719 - AluSc SINE Alu -10 299 1 21747 86 4 15 chr1 29392634 29393164 -213271189 + HERVL LTR ERVL 4008 4542 -1112 21 0 0 0 chr1 29393269 29393290 -213271063 + AT_rich Low_complexity Low_complexity 1 21 0 213 65 0 0 chr1 29393832 29393863 -213270490 + (T)n Simple_repeat Simple_repeat 1 31 0 215 300 57 0 chr1 29394194 29394282 -213270071 + MIR SINE MIR 32 123 -85 23 0 0 0 chr1 29394309 29394332 -213270021 + AT_rich Low_complexity Low_complexity 1 23 0 2148 112 3 0 chr1 29394337 29394640 -213269713 + AluSq SINE Alu 1 304 -9 2138 110 0 23 chr1 29394649 29394958 -213269395 + AluSx SINE Alu 3 304 -8 327 330 0 0 chr1 29394967 29395058 -213269295 + MIR SINE MIR 151 241 -21 423 0 0 0 chr1 29395443 29395490 -213268863 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 803 105 0 0 chr1 29395541 29395646 -213268707 + AluJb SINE Alu 5 109 -203 1035 173 48 10 chr1 29395651 29395859 -213268494 - AluJo SINE Alu -12 300 85 2066 122 3 0 chr1 29395888 29396183 -213268170 + AluSx SINE Alu 1 296 -16 2162 101 3 3 chr1 29396858 29397155 -213267198 - AluSg SINE Alu -13 297 1 754 105 0 0 chr1 29397155 29397260 -213267093 - AluSg1 SINE Alu -12 297 193 995 70 0 8 chr1 29397260 29397389 -213266964 - AluSg1 SINE Alu -181 128 1 27 29 0 0 chr1 29397429 29397463 -213266890 + AT_rich Low_complexity Low_complexity 1 34 0 689 259 116 58 chr1 29397463 29397791 -213266562 + L1ME4a LINE L1 5625 5971 -150 2227 89 0 16 chr1 29397829 29398132 -213266221 - AluSc SINE Alu -11 298 1 387 222 231 0 chr1 29398175 29398283 -213266070 - FRAM SINE Alu -33 133 1 1153 404 3 27 chr1 29398313 29398610 -213265743 - AluSx SINE Alu -8 294 5 1518 181 4 0 chr1 29398610 29398880 -213265473 - AluSq SINE Alu -42 271 1 363 44 0 0 chr1 29399673 29399718 -213264635 + (TA)n Simple_repeat Simple_repeat 1 45 0 2198 106 3 0 chr1 29399718 29400021 -213264332 - AluSp SINE Alu -9 304 1 541 130 0 0 chr1 29400294 29400371 -213263982 + AluSc SINE Alu 2 78 -231 2267 75 0 3 chr1 29400371 29400665 -213263688 + AluY SINE Alu 1 293 -18 1688 99 0 37 chr1 29400665 29400907 -213263446 + AluSc SINE Alu 63 296 -13 2335 83 0 0 chr1 29400909 29401209 -213263144 + AluY SINE Alu 3 302 -9 2183 90 10 0 chr1 29401227 29401517 -213262836 + AluSx SINE Alu 13 305 -7 1556 159 66 10 chr1 29401910 29402199 -213262154 + AluJb SINE Alu 1 305 -7 2018 117 0 42 chr1 29402205 29402348 -213262005 + AluSg SINE Alu 1 148 -162 2400 66 0 7 chr1 29402348 29402653 -213261700 + AluY SINE Alu 1 303 -8 2018 117 0 42 chr1 29402653 29402818 -213261535 + AluSg SINE Alu 148 296 -14 1168 206 0 52 chr1 29402987 29403239 -213261114 - MER8 DNA MER2_type 0 239 1 2307 50 10 13 chr1 29403386 29403685 -213260668 - AluY SINE Alu -13 298 1 1652 189 31 0 chr1 29403691 29403977 -213260376 - AluJo SINE Alu -17 295 1 1886 64 142 15 chr1 29404887 29405154 -213259199 + AluY SINE Alu 1 301 0 267 327 109 20 chr1 29405155 29405256 -213259097 - MIR SINE MIR -133 129 20 319 280 40 72 chr1 29405414 29405497 -213258856 - L2 LINE L2 0 3272 3193 2196 103 6 3 chr1 29405497 29405809 -213258544 + AluSp SINE Alu 1 313 0 319 280 40 72 chr1 29405809 29405850 -213258503 - L2 LINE L2 -79 3193 3152 39 60 0 0 chr1 29405961 29406028 -213258325 + AT_rich Low_complexity Low_complexity 1 67 0 474 212 40 13 chr1 29406507 29406637 -213257716 - MIR SINE MIR -62 146 62 259 115 0 96 chr1 29406683 29406726 -213257627 + AluJo/FLAM SINE Alu 87 126 -176 2261 80 0 7 chr1 29406726 29407025 -213257328 - AluSx SINE Alu -15 297 1 817 161 0 27 chr1 29407040 29407189 -213257164 + AluY SINE Alu 128 272 -39 1334 82 0 0 chr1 29407297 29407468 -213256885 - AluSg SINE Alu -138 172 2 2204 79 10 3 chr1 29407666 29407957 -213256396 - AluSp SINE Alu -20 293 1 1663 128 0 67 chr1 29407990 29408302 -213256051 - AluSx SINE Alu -21 291 1 1819 156 3 0 chr1 29408706 29409001 -213255352 - AluJo SINE Alu -16 296 1 1784 103 65 0 chr1 29409046 29409307 -213255046 - AluSp SINE Alu -35 278 1 1533 156 32 3 chr1 29409794 29410076 -213254277 + AluJb SINE Alu 1 290 -22 984 93 0 15 chr1 29412465 29412711 -213251642 + AluSq SINE Alu 2 300 -13 1860 140 24 3 chr1 29413165 29413457 -213250896 + AluSx SINE Alu 1 298 -14 329 312 147 23 chr1 29413577 29413795 -213250558 - MIR SINE MIR 0 262 18 1088 121 4 143 chr1 29413844 29414004 -213250349 - AluSg/x SINE Alu -23 287 167 189 0 0 0 chr1 29414004 29414025 -213250328 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1088 121 4 143 chr1 29414025 29414095 -213250258 - AluSg/x SINE Alu -143 167 89 2258 114 0 0 chr1 29414125 29414424 -213249929 + AluSg SINE Alu 1 299 -11 895 100 0 8 chr1 29414443 29414563 -213249790 - FLAM_C SINE Alu -24 119 1 2063 107 0 7 chr1 29415287 29415568 -213248785 + AluSc SINE Alu 24 302 -7 1995 160 6 10 chr1 29415701 29416013 -213248340 - AluJb SINE Alu -1 311 1 3630 177 33 83 chr1 29416022 29416798 -213247555 - MER21B LTR ERV1 -22 841 27 2262 92 0 57 chr1 29416798 29417113 -213247240 + AluSc SINE Alu 2 298 -11 3630 177 33 83 chr1 29417113 29417129 -213247224 - MER21B LTR ERV1 -836 27 95 2515 49 3 23 chr1 29417129 29417434 -213246919 + AluY SINE Alu 1 299 -12 3630 177 33 83 chr1 29417434 29417526 -213246827 - MER21B LTR ERV1 -767 96 1 945 223 0 0 chr1 29418022 29418197 -213246156 + FAM SINE Alu 1 175 0 240 288 110 14 chr1 29418212 29418285 -213246068 - MIR SINE MIR -107 101 22 2472 55 7 19 chr1 29419575 29419882 -213244471 + AluSq SINE Alu 1 303 -10 2409 79 3 23 chr1 29420068 29420373 -213243980 + AluSx SINE Alu 1 299 -13 1126 133 6 0 chr1 29421098 29421256 -213243097 + AluSg/x SINE Alu 134 292 -18 2364 96 0 3 chr1 29421257 29421569 -213242784 + AluY SINE Alu 1 311 0 1746 118 66 21 chr1 29422660 29422949 -213241404 + AluSq SINE Alu 1 302 -11 638 192 0 33 chr1 29423048 29423168 -213241185 - FAM SINE Alu -21 164 49 2083 118 26 7 chr1 29423522 29423828 -213240525 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 29425404 29425426 -213238927 + GC_rich Low_complexity Low_complexity 1 22 0 321 316 111 12 chr1 29426126 29426297 -213238056 - MIR SINE MIR -6 256 69 2169 79 7 7 chr1 29426797 29427103 -213237250 + AluSc SINE Alu 4 309 0 331 284 75 45 chr1 29427235 29427369 -213236984 + MIR SINE MIR 50 187 -75 25 0 0 28 chr1 29427370 29427388 -213236965 + AT_rich Low_complexity Low_complexity 1 18 -17 2149 123 0 3 chr1 29427388 29427696 -213236657 + AluSx SINE Alu 1 307 -5 25 0 0 28 chr1 29427696 29427713 -213236640 + AT_rich Low_complexity Low_complexity 18 35 0 203 119 262 0 chr1 29428112 29428154 -213236199 - L2 LINE L2 -6 3307 3255 427 268 97 40 chr1 29428285 29428395 -213235958 - L2 LINE L2 -213 3059 2957 2344 92 0 6 chr1 29428395 29428709 -213235644 + AluSq SINE Alu 1 312 -1 427 268 97 40 chr1 29428709 29428826 -213235527 - L2 LINE L2 -315 2957 2819 1141 160 0 0 chr1 29428836 29429005 -213235348 + AluSg/x SINE Alu 127 295 -15 2253 84 38 0 chr1 29429007 29429294 -213235059 + AluY SINE Alu 1 298 -13 552 268 78 123 chr1 29429328 29429523 -213234830 - L2 LINE L2 -579 2735 2533 679 200 15 8 chr1 29429523 29429653 -213234700 + AluJo/FLAM SINE Alu 3 133 -169 2420 97 0 0 chr1 29429655 29429963 -213234390 + AluSc SINE Alu 1 308 -1 552 268 78 123 chr1 29429963 29430212 -213234141 - L2 LINE L2 -782 2532 2273 2524 63 3 0 chr1 29430212 29430514 -213233839 + AluY SINE Alu 1 303 -8 552 268 78 123 chr1 29430514 29430540 -213233813 - L2 LINE L2 -1041 2273 2247 1942 145 3 39 chr1 29430540 29430674 -213233679 + AluJo SINE Alu 1 138 -174 198 0 0 0 chr1 29430674 29430696 -213233657 + (TA)n Simple_repeat Simple_repeat 2 23 0 1942 145 3 39 chr1 29430696 29430871 -213233482 + AluJo SINE Alu 138 299 -13 552 268 78 123 chr1 29430871 29431014 -213233339 - L2 LINE L2 -1067 2247 2145 204 327 109 40 chr1 29431049 29431150 -213233203 + MIR3 SINE MIR 94 201 -7 2193 110 0 20 chr1 29431591 29431883 -213232470 + AluSg SINE Alu 1 286 -24 1695 156 57 11 chr1 29431904 29432186 -213232167 - AluJo SINE Alu -7 305 11 283 275 53 76 chr1 29432209 29432340 -213232013 + L2 LINE L2 2916 3043 -229 2204 116 3 0 chr1 29432625 29432919 -213231434 + AluSx SINE Alu 1 295 -17 1489 65 0 0 chr1 29432973 29433142 -213231211 + AluSq SINE Alu 1 169 -144 313 153 17 0 chr1 29533142 29533201 -213131152 + AluSp/q SINE Alu 242 301 -2 1585 203 3 10 chr1 29533226 29533521 -213130832 + AluJb SINE Alu 3 295 -17 209 332 113 28 chr1 29533544 29533827 -213130526 + L2 LINE L2 2171 2477 -837 1109 161 31 21 chr1 29533872 29534065 -213130288 - AluJb SINE Alu -2 310 116 2198 88 7 10 chr1 29534070 29534366 -213129987 + AluSq SINE Alu 1 295 -18 2025 134 0 3 chr1 29534370 29534675 -213129678 + AluY SINE Alu 4 307 -4 2434 92 10 0 chr1 29534681 29534984 -213129369 + AluSq SINE Alu 1 306 -7 862 141 0 30 chr1 29535205 29535340 -213129013 + FLAM_C SINE Alu 2 132 -1 1534 145 0 5 chr1 29535377 29535598 -213128755 + AluJb SINE Alu 86 305 -7 379 129 106 35 chr1 29535607 29535692 -213128661 + MER5B DNA MER1_type 88 178 0 204 225 0 0 chr1 29535919 29535959 -213128394 + CT-rich Low_complexity Low_complexity 2 41 0 21 0 0 0 chr1 29536010 29536031 -213128322 + AT_rich Low_complexity Low_complexity 1 21 0 2651 68 0 0 chr1 29536272 29536583 -213127770 + AluSq SINE Alu 1 311 -2 1890 128 3 47 chr1 29537128 29537424 -213126929 + AluSx SINE Alu 11 293 -19 739 111 222 0 chr1 29537424 29537541 -213126812 + AluSg/x SINE Alu 132 274 -36 2509 85 0 0 chr1 29537558 29537863 -213126490 + AluSx SINE Alu 1 305 -7 191 282 58 87 chr1 29537961 29538064 -213126289 - L2 LINE L2 -203 3069 2970 397 277 8 17 chr1 29538273 29538392 -213125961 + MIR SINE MIR 66 183 -79 1901 99 33 0 chr1 29538449 29538691 -213125662 + AluSc SINE Alu 1 250 -59 5212 172 16 1 chr1 29538768 29539682 -213124671 + Harlequin LTR ERV1 4616 5543 -1353 228 67 0 0 chr1 29539787 29539817 -213124536 + (C)n Simple_repeat Simple_repeat 1 30 0 373 273 55 60 chr1 29539857 29540040 -213124313 - LTR2 LTR ERV1 -267 182 1 355 250 194 25 chr1 29540068 29540228 -213124125 - MIR SINE MIR -56 206 20 1817 161 0 18 chr1 29540658 29540972 -213123381 + AluJb SINE Alu 1 309 0 2408 94 0 3 chr1 29541272 29541580 -213122773 + AluSx SINE Alu 1 307 -5 1611 165 4 14 chr1 29541903 29542182 -213122171 - AluJb SINE Alu -17 295 20 2031 138 38 0 chr1 29543760 29544050 -213120303 + AluSx SINE Alu 1 301 -11 921 119 6 50 chr1 29544671 29544830 -213119523 + AluSq/x SINE Alu 1 152 -161 192 143 0 0 chr1 29545113 29545141 -213119212 - MIR SINE MIR -20 242 215 2365 85 0 3 chr1 29545387 29545680 -213118673 - AluSg SINE Alu -18 292 1 837 221 25 0 chr1 29545687 29545850 -213118503 - AluSp SINE Alu -16 297 131 1470 64 0 0 chr1 29545856 29546028 -213118325 - AluY SINE Alu -13 298 127 2267 91 7 0 chr1 29546053 29546340 -213118013 - AluSx SINE Alu -23 289 1 189 0 0 0 chr1 29546340 29546361 -213117992 + (T)n Simple_repeat Simple_repeat 1 21 0 369 182 68 0 chr1 29546362 29546450 -213117903 - MER50 LTR ERV1 -142 592 499 2452 72 0 34 chr1 29546476 29546797 -213117556 - AluY SINE Alu -1 310 1 855 115 0 31 chr1 29546809 29546939 -213117414 - FLAM_C SINE Alu -17 126 1 1028 172 0 21 chr1 29546940 29547126 -213117227 - AluJo SINE Alu -11 301 120 1211 181 43 36 chr1 29547364 29547640 -213116713 + AluJo SINE Alu 32 309 -3 318 262 103 62 chr1 29548131 29548276 -213116077 + AluJo SINE Alu 1 151 -151 1975 191 62 9 chr1 29548382 29548832 -213115521 - L1ME LINE L1 -375 5791 5318 714 200 0 0 chr1 29548847 29548962 -213115391 - AluJo SINE Alu -195 117 3 2060 117 7 20 chr1 29548970 29549270 -213115083 - AluSx SINE Alu -16 296 1 948 212 55 11 chr1 29549360 29549443 -213114910 - L1ME LINE L1 -863 5283 5205 2259 106 0 7 chr1 29549443 29549746 -213114607 - AluSg1 SINE Alu -8 301 1 948 212 55 11 chr1 29549746 29549936 -213114417 - L1ME LINE L1 -941 5205 4998 2282 102 0 0 chr1 29549945 29550239 -213114114 - AluSq SINE Alu -17 296 3 231 348 108 19 chr1 29550242 29550400 -213113953 + L2 LINE L2 2586 2757 -557 248 100 0 20 chr1 29550414 29550464 -213113889 + (TG)n Simple_repeat Simple_repeat 1 49 0 748 171 0 57 chr1 29550713 29550853 -213113500 + AluJo/FLAM SINE Alu 1 132 -170 2255 124 7 0 chr1 29550856 29551162 -213113191 + AluSx SINE Alu 1 308 -4 231 296 25 0 chr1 29551192 29551273 -213113080 + MIR SINE MIR 110 192 -70 753 281 43 11 chr1 29551761 29552042 -213112311 + LTR16A LTR ERVL 155 444 -6 1055 158 0 0 chr1 29552187 29552345 -213112008 + AluSx SINE Alu 2 159 -153 480 119 0 0 chr1 29552445 29552512 -213111841 - AluS SINE Alu -245 68 2 1372 221 20 7 chr1 29552518 29552817 -213111536 - AluJo SINE Alu -9 303 1 1795 168 3 20 chr1 29552825 29553123 -213111230 - AluJo SINE Alu -19 293 1 2261 114 3 0 chr1 29553153 29553450 -213110903 + AluSx SINE Alu 1 298 -14 874 207 124 0 chr1 29553471 29553664 -213110689 - MER20 DNA MER1_type -1 218 2 1556 179 58 3 chr1 29553689 29553980 -213110373 + AluJo SINE Alu 1 307 -5 2207 124 0 0 chr1 29554084 29554382 -213109971 - AluSx SINE Alu -14 298 1 222 185 93 0 chr1 29554684 29554738 -213109615 + L2 LINE L2 3206 3264 -8 544 199 48 34 chr1 29555302 29555448 -213108905 - L2 LINE L2 -8 3305 3158 2415 85 0 25 chr1 29555476 29555793 -213108560 - AluY SINE Alu -2 309 1 709 94 0 0 chr1 29555962 29556058 -213108295 + AluSp/q SINE Alu 155 250 -63 1366 135 9 22 chr1 29556058 29556287 -213108066 + AluSg/x SINE Alu 83 308 -2 2357 102 0 7 chr1 29556312 29556615 -213107738 + AluSg SINE Alu 1 301 -9 1649 131 20 116 chr1 29556826 29556968 -213107385 + AluYb8 SINE Alu 1 155 -163 2190 130 0 0 chr1 29556968 29557269 -213107084 + AluSg SINE Alu 1 301 -9 1649 131 20 116 chr1 29557269 29557470 -213106883 + AluYb8 SINE Alu 155 311 -7 974 188 0 18 chr1 29557471 29557641 -213106712 + AluJb SINE Alu 133 299 -13 333 298 37 43 chr1 29558923 29559111 -213105242 - L2 LINE L2 -161 3111 2925 183 299 26 26 chr1 29559237 29559314 -213105039 - L2 LINE L2 -213 3059 2983 250 300 36 45 chr1 29559338 29559448 -213104905 + MIR SINE MIR 41 149 -59 2241 93 10 30 chr1 29559466 29559768 -213104585 - AluSq SINE Alu -17 296 1 225 313 99 42 chr1 29559795 29559987 -213104366 - L2 LINE L2 -1216 2098 1896 276 345 63 6 chr1 29760782 29760956 -212903397 + L1ME4a LINE L1 5611 5794 -327 258 271 53 65 chr1 29760968 29761138 -212903215 + L1ME4a LINE L1 5864 6031 -90 1776 145 13 20 chr1 29761144 29761322 -212903031 - AluJo SINE Alu 0 312 135 2151 121 0 0 chr1 29761322 29761627 -212902726 - AluSx SINE Alu -7 305 1 1776 145 13 20 chr1 29761627 29761751 -212902602 - AluJo SINE Alu -177 135 12 1778 121 30 40 chr1 29761767 29762065 -212902288 - AluJb SINE Alu -17 295 1 699 133 0 0 chr1 29762411 29762516 -212901837 + AluSg/x SINE Alu 208 312 0 24 32 0 0 chr1 29762522 29762553 -212901800 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 29762815 29762839 -212901514 + AT_rich Low_complexity Low_complexity 1 24 0 720 167 48 8 chr1 29762840 29762966 -212901387 - FLAM_C SINE Alu -2 131 1 309 213 76 16 chr1 29762966 29763076 -212901277 + MIR SINE MIR 41 153 -55 2215 99 3 0 chr1 29763102 29763396 -212900957 - AluSq SINE Alu -18 295 1 192 307 40 10 chr1 29764742 29764843 -212899510 + MIR3 SINE MIR 55 158 -50 400 319 53 0 chr1 29765877 29766065 -212898288 - MIR SINE MIR -6 256 59 192 241 0 0 chr1 29766339 29766397 -212897956 + L2 LINE L2 2994 3051 -221 211 219 207 0 chr1 29766482 29766564 -212897789 - MIR SINE MIR -63 145 47 214 225 11 45 chr1 29767697 29767786 -212896567 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 432 309 0 36 chr1 29767910 29768075 -212896278 - MIR SINE MIR -80 182 24 180 50 25 50 chr1 29768380 29768420 -212895933 + (TCTCC)n Simple_repeat Simple_repeat 5 43 0 717 155 0 0 chr1 29768549 29768652 -212895701 + FRAM SINE Alu 45 147 -29 180 0 0 0 chr1 29768652 29768672 -212895681 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 238 125 0 54 chr1 29768674 29768730 -212895623 + L1MA2 LINE L1 6248 6300 -4 238 282 48 40 chr1 29768805 29768929 -212895424 - MIR SINE MIR 0 262 138 1233 54 0 0 chr1 29769110 29769257 -212895096 + L1PA5 LINE L1 5999 6145 -9 23 0 0 0 chr1 29769257 29769280 -212895073 + AT_rich Low_complexity Low_complexity 1 23 0 2967 55 3 0 chr1 29769280 29769663 -212894690 + L1PA6 LINE L1 5770 6153 -1 42 0 0 0 chr1 29769663 29769705 -212894648 + AT_rich Low_complexity Low_complexity 1 42 0 2071 101 0 27 chr1 29769830 29770128 -212894225 - AluY SINE Alu -21 290 1 835 107 0 94 chr1 29770128 29770190 -212894163 - AluSq/x SINE Alu -178 135 69 2223 89 3 0 chr1 29770190 29770483 -212893870 - AluSp SINE Alu -19 294 1 835 107 0 94 chr1 29770483 29770569 -212893784 - AluSq/x SINE Alu -244 69 1 252 284 43 74 chr1 29770690 29770852 -212893501 + L2 LINE L2 2911 3067 -205 502 231 125 19 chr1 29770910 29771070 -212893283 + L2 LINE L2 2588 2764 -550 1243 106 0 6 chr1 29771073 29771243 -212893110 - AluSq SINE Alu -144 169 1 225 370 14 0 chr1 29771259 29771332 -212893021 + L2 LINE L2 3100 3173 -99 387 292 305 14 chr1 29771353 29771720 -212892633 + L2 LINE L2 2824 3297 -16 2133 109 7 3 chr1 29771724 29772026 -212892327 - AluSq SINE Alu -10 303 1 209 294 132 0 chr1 29772048 29772116 -212892237 + L2 LINE L2 3097 3173 -99 2225 86 0 3 chr1 29772185 29772476 -212891877 + AluSq SINE Alu 1 290 -23 254 210 200 50 chr1 29772497 29772597 -212891756 + L2 LINE L2 3192 3306 -7 185 316 61 31 chr1 29772602 29772700 -212891653 + L2 LINE L2 3169 3269 -3 213 94 0 0 chr1 29772787 29772819 -212891534 + (CA)n Simple_repeat Simple_repeat 2 33 0 378 255 121 15 chr1 29773018 29773172 -212891181 + MIR SINE MIR 15 181 -81 2030 101 6 80 chr1 29773433 29773770 -212890583 + AluSq SINE Alu 2 313 0 1916 171 0 0 chr1 29773992 29774301 -212890052 + AluJb SINE Alu 1 309 -3 531 323 96 14 chr1 29774838 29775129 -212889224 - L2 LINE L2 -2 3311 2997 563 225 23 0 chr1 29775314 29775443 -212888910 - MIR SINE MIR -77 185 54 21 0 0 0 chr1 29779590 29779611 -212884742 + AT_rich Low_complexity Low_complexity 1 21 0 2549 42 0 7 chr1 29780518 29780826 -212883527 - AluY SINE Alu -5 306 1 536 280 169 0 chr1 29780847 29781036 -212883317 - MIR SINE MIR -19 243 23 2426 69 0 3 chr1 29781095 29781399 -212882954 - AluSx SINE Alu -9 303 1 275 285 73 32 chr1 29781690 29781813 -212882540 - MIR3 SINE MIR -22 186 59 1961 79 29 29 chr1 29781879 29782159 -212882194 + AluSx SINE Alu 1 280 -32 250 329 0 14 chr1 29782348 29782421 -212881932 - MIR SINE MIR -82 180 109 421 236 110 33 chr1 29782445 29782627 -212881726 - L2 LINE L2 -97 3216 3021 297 301 29 29 chr1 29782607 29782710 -212881643 - MIR SINE MIR -90 118 16 * 191 344 16 0 chr1 29783544 29783605 -212880748 + L2 LINE L2 3125 3186 -86 360 250 11 0 chr1 29785895 29785983 -212878370 + MIR SINE MIR 54 142 -66 219 275 50 12 chr1 29786058 29786138 -212878215 - MIR3 SINE MIR -17 191 109 2037 145 0 0 chr1 29786363 29786667 -212877686 - AluSx SINE Alu -8 304 1 342 251 272 21 chr1 29787325 29787516 -212876837 + MIR SINE MIR 21 259 -3 342 274 24 0 chr1 29787526 29787610 -212876743 - MIR SINE MIR -89 119 34 198 0 0 0 chr1 29789956 29789978 -212874375 + (T)n Simple_repeat Simple_repeat 1 22 0 470 211 55 28 chr1 29791552 29791661 -212872692 + MIR SINE MIR 21 132 -76 222 171 0 0 chr1 29793166 29793207 -212871146 + G-rich Low_complexity Low_complexity 1 41 0 2404 57 0 10 chr1 29793489 29793803 -212870550 + AluY SINE Alu 1 311 0 240 35 0 0 chr1 29794178 29794207 -212870146 + (GGA)n Simple_repeat Simple_repeat 1 29 0 326 379 45 20 chr1 29794665 29794863 -212869490 + L3 LINE CR1 1356 1558 -19 2339 87 0 10 chr1 29795928 29796262 -212868091 + AluY SINE Alu 1 311 0 677 238 74 21 chr1 29796301 29796490 -212867863 + MIR SINE MIR 13 211 -51 1706 160 23 13 chr1 29796557 29796857 -212867496 - AluJo SINE Alu -9 303 1 416 266 166 12 chr1 29799431 29799600 -212864753 - L3 LINE CR1 -1 1576 1382 207 0 0 0 chr1 29799707 29799730 -212864623 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 21 0 0 0 chr1 29803221 29803242 -212861111 + AT_rich Low_complexity Low_complexity 1 21 0 1359 112 24 0 chr1 29803770 29803975 -212860378 + AluSg/x SINE Alu 85 294 -18 1979 139 0 7 chr1 29804258 29804560 -212859793 - AluSx SINE Alu -12 300 1 2253 81 3 10 chr1 29804868 29805175 -212859178 - AluSx SINE Alu -5 307 3 304 301 29 64 chr1 29805708 29805750 -212858603 + L1 LINE L1 3090 3132 -3014 1688 141 0 23 chr1 29805750 29805888 -212858465 + AluSx SINE Alu 1 132 -180 2101 116 0 0 chr1 29805888 29806181 -212858172 + AluSx SINE Alu 1 293 -19 1688 141 0 23 chr1 29806181 29806305 -212858048 + AluSx SINE Alu 132 257 -55 304 301 29 64 chr1 29806305 29806435 -212857918 + L1 LINE L1 3132 3256 -2890 473 253 79 34 chr1 29806661 29806692 -212857661 + MIR SINE MIR 20 48 -214 2457 72 0 0 chr1 29806692 29806997 -212857356 + AluY SINE Alu 1 305 -6 473 253 79 34 chr1 29806997 29807143 -212857210 + MIR SINE MIR 48 205 -57 1976 152 0 7 chr1 29807212 29807515 -212856838 + AluSx SINE Alu 1 301 -11 1899 114 53 13 chr1 29807538 29807837 -212856516 - AluSx SINE Alu -1 311 1 296 283 0 33 chr1 29808589 29808681 -212855672 + L2 LINE L2 2966 3054 -218 235 287 58 46 chr1 29808796 29808883 -212855470 - L2 LINE L2 -17 3255 3168 1357 142 67 52 chr1 29808888 29809156 -212855197 - AluJo SINE Alu -17 295 24 306 373 7 0 chr1 29809264 29809406 -212854947 - L2 LINE L2 -232 3040 2898 1617 200 20 3 chr1 29809441 29809746 -212854607 - AluJo SINE Alu -2 310 1 2169 98 3 32 chr1 29809779 29809915 -212854438 + AluSq SINE Alu 1 139 -174 2520 74 0 3 chr1 29809915 29810225 -212854128 + AluY SINE Alu 1 309 -2 2169 98 3 32 chr1 29810225 29810404 -212853949 + AluSq SINE Alu 139 307 -6 651 239 23 72 chr1 29810766 29810875 -212853478 + MIR SINE MIR 2 115 -147 2290 104 3 0 chr1 29810875 29811172 -212853181 - AluSx SINE Alu -14 298 1 651 239 23 72 chr1 29811172 29811328 -212853025 + MIR SINE MIR 115 256 -6 255 314 29 64 chr1 29811374 29811514 -212852839 + L2 LINE L2 3137 3271 -1 2257 104 3 3 chr1 29813855 29814154 -212850199 + AluSq SINE Alu 1 299 -14 2034 119 61 3 chr1 29814712 29815005 -212849348 - AluJb SINE Alu -2 310 1 769 185 8 0 chr1 29815005 29815135 -212849218 - AluJb SINE Alu -17 295 165 25 0 0 0 chr1 29815162 29815187 -212849166 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr1 29816667 29816694 -212847659 + AT_rich Low_complexity Low_complexity 1 27 0 2761 39 0 0 chr1 29816728 29817036 -212847317 + AluY SINE Alu 1 308 -3 1814 165 4 0 chr1 29817153 29817425 -212846928 - AluJo SINE Alu -37 275 3 1097 199 5 0 chr1 29817612 29817813 -212846540 - MER105 DNA DNA -1 203 2 511 285 88 73 chr1 29818424 29818684 -212845669 + L3 LINE CR1 1311 1574 -3 243 312 26 0 chr1 29818687 29818764 -212845589 + MIR3 SINE MIR 113 191 -17 227 291 25 0 chr1 29819217 29819296 -212845057 + L3 LINE CR1 1496 1576 -1 2318 89 7 3 chr1 29819317 29819610 -212844743 - AluSp SINE Alu -19 294 1 1584 178 7 11 chr1 29819670 29819939 -212844414 + AluJo SINE Alu 1 268 -44 285 75 0 0 chr1 29819990 29820030 -212844323 + (GGGTG)n Simple_repeat Simple_repeat 3 42 0 1760 158 19 53 chr1 29820530 29820852 -212843501 + AluJo SINE Alu 1 311 -1 418 242 112 39 chr1 29823436 29823657 -212840696 + MIR SINE MIR 4 236 -26 302 121 0 35 chr1 29823667 29823725 -212840628 + (TAG)n Simple_repeat Simple_repeat 2 57 0 1852 171 3 7 chr1 29824084 29824394 -212839959 + AluJb SINE Alu 1 309 -3 281 145 16 180 chr1 29824540 29824612 -212839741 - HsTC2 DNA Tc2 0 1898 1816 1857 163 10 0 chr1 29824612 29824901 -212839452 + AluJb SINE Alu 5 296 -16 281 145 16 180 chr1 29824901 29824950 -212839403 - HsTC2 DNA Tc2 -82 1816 3 724 188 0 0 chr1 29824960 29825077 -212839276 - FAM SINE Alu -23 162 46 631 132 108 78 chr1 29825152 29825238 -212839115 + MER7A DNA MER2_type 2 93 -2945 1979 149 0 3 chr1 29825238 29825534 -212838819 - AluSq SINE Alu -18 295 1 631 132 108 78 chr1 29825534 29825576 -212838777 + MER7A DNA MER2_type 93 132 -214 1663 182 3 33 chr1 29825577 29825712 -212838641 + AluJo SINE Alu 1 138 -164 2323 98 23 0 chr1 29825712 29825838 -212838515 + AluSx SINE Alu 1 123 -189 2693 36 0 3 chr1 29825838 29826144 -212838209 + AluY SINE Alu 1 305 -6 2323 98 23 0 chr1 29826144 29826322 -212838031 + AluSx SINE Alu 123 312 0 1663 182 3 33 chr1 29826322 29826488 -212837865 + AluJo SINE Alu 138 293 -9 293 119 0 0 chr1 29826515 29826557 -212837796 + FLAM SINE Alu 84 125 -8 284 167 33 0 chr1 29826560 29826620 -212837733 + L1MA3 LINE L1 6244 6305 0 2219 97 3 22 chr1 29826631 29826942 -212837411 + AluSg SINE Alu 1 305 -5 1616 184 0 41 chr1 29826944 29827088 -212837265 + AluJb SINE Alu 1 149 -153 2205 102 34 0 chr1 29827088 29827381 -212836972 + AluSg SINE Alu 1 303 -7 1616 184 0 41 chr1 29827381 29827550 -212836803 + AluJb SINE Alu 149 302 0 671 216 0 8 chr1 29827556 29827690 -212836663 + FLAM_A SINE Alu 1 133 0 2321 97 3 0 chr1 29827697 29827995 -212836358 + AluSq SINE Alu 1 299 -14 361 228 72 104 chr1 29828058 29828146 -212836207 + MIR SINE MIR 76 165 -97 2145 104 10 7 chr1 29828146 29828444 -212835909 - AluSq SINE Alu -14 299 1 1701 197 3 0 chr1 29828451 29828745 -212835608 - AluJo SINE Alu -17 295 1 361 228 72 104 chr1 29828745 29828841 -212835512 + MIR SINE MIR 171 262 0 307 316 132 13 chr1 29829532 29829760 -212834593 - MIR SINE MIR -6 256 2 1890 140 0 14 chr1 29830878 29831163 -212833190 + AluJb SINE Alu 19 299 -13 2000 147 31 0 chr1 29832933 29833225 -212831128 + AluSx SINE Alu 1 301 -11 199 336 135 0 chr1 29833573 29833677 -212830676 + L2 LINE L2 3142 3259 -13 2342 94 0 3 chr1 29833680 29833977 -212830376 + AluSx SINE Alu 1 296 -16 2367 107 0 0 chr1 29834226 29834526 -212829827 + AluSx SINE Alu 1 300 -12 2374 84 7 0 chr1 29834866 29835162 -212829191 - AluSp SINE Alu -15 298 1 236 130 22 0 chr1 29835168 29835214 -212829139 + CT-rich Low_complexity Low_complexity 3 49 0 949 136 0 0 chr1 29835293 29835425 -212828928 + FLAM_C SINE Alu 2 133 0 186 324 141 0 chr1 29835488 29835559 -212828794 - L2 LINE L2 -36 3236 3156 412 263 167 44 chr1 29835715 29836008 -212828345 - L2 LINE L2 -342 2972 2644 1320 165 143 0 chr1 29836148 29836414 -212827939 - MER44D DNA MER2_type 0 609 36 2192 96 0 0 chr1 29836596 29836868 -212827485 + AluSc SINE Alu 1 272 -37 204 40 0 0 chr1 29836873 29836898 -212827455 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2214 112 7 10 chr1 29836898 29837203 -212827150 + AluSx SINE Alu 1 304 -8 2055 128 7 10 chr1 29837288 29837586 -212826767 + AluSx SINE Alu 2 298 -14 21 0 0 0 chr1 29837586 29837607 -212826746 + AT_rich Low_complexity Low_complexity 1 21 0 1758 119 0 0 chr1 29837674 29837910 -212826443 + AluSq SINE Alu 2 237 -76 224 178 0 0 chr1 29839268 29839313 -212825040 + MIR SINE MIR 105 149 -113 315 0 0 0 chr1 29840153 29840188 -212824165 + (TG)n Simple_repeat Simple_repeat 2 36 0 2034 134 3 0 chr1 29840430 29840720 -212823633 - AluSq SINE Alu -22 291 1 474 231 29 81 chr1 29840742 29840915 -212823438 + L2 LINE L2 3148 3311 -2 1460 77 0 11 chr1 29842055 29842237 -212822116 - AluY SINE Alu -131 180 1 201 333 7 0 chr1 29842373 29842511 -212821842 + (TG)n Simple_repeat Simple_repeat 2 140 0 252 0 0 0 chr1 29842692 29842720 -212821633 + (TG)n Simple_repeat Simple_repeat 1 28 0 525 311 8 66 chr1 29842993 29843250 -212821103 - MLT1H LTR MaLR -285 264 23 312 254 0 0 chr1 29843269 29843340 -212821013 - MIR SINE MIR -108 154 84 192 349 40 16 chr1 29844042 29844168 -212820185 + L2 LINE L2 2849 2977 -337 784 175 12 19 chr1 29844470 29844832 -212819521 + GA-rich Low_complexity Low_complexity 1 359 0 192 77 0 0 chr1 29894901 29894927 -212769426 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 357 277 109 8 chr1 29895410 29895529 -212768824 + L2 LINE L2 3179 3309 -4 707 251 54 0 chr1 29895680 29895847 -212768506 + MER5B DNA MER1_type 2 177 -1 1088 135 6 0 chr1 29895920 29896090 -212768263 - AluSg/x SINE Alu -2 310 140 660 224 40 88 chr1 29896119 29896369 -212767984 + MIR SINE MIR 23 260 -2 288 294 0 18 chr1 29896451 29896464 -212767889 + A-rich Low_complexity Low_complexity 1 13 -94 2133 88 33 16 chr1 29896464 29896769 -212767584 + AluSg SINE Alu 1 310 0 288 294 0 18 chr1 29896769 29896796 -212767557 + A-rich Low_complexity Low_complexity 13 39 -68 2238 69 0 7 chr1 29896796 29897086 -212767267 - AluY SINE Alu -22 289 2 288 294 0 18 chr1 29897086 29897113 -212767240 + A-rich Low_complexity Low_complexity 39 65 -42 838 163 0 0 chr1 29897113 29897242 -212767111 + FLAM_C SINE Alu 1 129 -4 288 294 0 18 chr1 29897242 29897281 -212767072 + A-rich Low_complexity Low_complexity 65 107 0 273 239 87 61 chr1 29897288 29897429 -212766924 + MIR SINE MIR 45 190 -59 219 258 144 23 chr1 29898434 29898566 -212765787 + L2 LINE L2 2915 3062 -210 291 130 0 0 chr1 29899914 29899968 -212764385 + (T)n Simple_repeat Simple_repeat 1 54 0 217 213 0 21 chr1 29900301 29900348 -212764005 + CT-rich Low_complexity Low_complexity 2 47 0 201 125 28 0 chr1 29900740 29900779 -212763574 + MIR SINE MIR 102 142 -66 705 279 92 18 chr1 29900854 29901083 -212763270 + MIR SINE MIR 17 262 0 404 312 30 55 chr1 29902900 29903099 -212761254 - L2 LINE L2 -37 3235 3042 2178 102 6 10 chr1 29903785 29904098 -212760255 + AluSx SINE Alu 1 312 0 329 240 32 96 chr1 29904118 29904169 -212760184 + MIR3 SINE MIR 74 127 -81 1866 172 0 0 chr1 29904169 29904472 -212759881 - AluJb SINE Alu -1 311 9 329 240 32 96 chr1 29904472 29904545 -212759808 + MIR3 SINE MIR 127 190 -18 1981 132 13 10 chr1 29904793 29905104 -212759249 - AluJo SINE Alu 0 312 1 2361 87 0 0 chr1 29905111 29905409 -212758944 - AluSg SINE Alu -12 298 1 203 268 56 14 chr1 29905547 29905618 -212758735 + MIR3 SINE MIR 83 156 -52 195 100 0 0 chr1 29905629 29905659 -212758694 + (TC)n Simple_repeat Simple_repeat 1 30 0 198 363 73 50 chr1 29905736 29905915 -212758438 + MIR3 SINE MIR 11 193 -15 268 258 117 39 chr1 29906231 29906359 -212757994 - L2 LINE L2 -202 3070 2933 225 0 0 0 chr1 29906667 29906692 -212757661 + (A)n Simple_repeat Simple_repeat 1 25 0 2248 116 0 0 chr1 29906974 29907284 -212757069 - AluSx SINE Alu -2 310 1 2271 93 0 3 chr1 29907294 29907594 -212756759 - AluSq SINE Alu -13 300 2 296 289 48 19 chr1 29907623 29907727 -212756626 + L2 LINE L2 3153 3259 -13 336 311 198 14 chr1 29908188 29908400 -212755953 - MIR SINE MIR -4 258 8 294 339 27 0 chr1 29909170 29909282 -212755071 + L2 LINE L2 2932 3046 -226 2132 107 7 7 chr1 29909328 29909628 -212754725 + AluSg SINE Alu 1 300 -10 233 348 36 43 chr1 29909631 29909769 -212754584 - MIR3 SINE MIR -40 168 32 * 253 304 122 20 chr1 29909707 29909855 -212754498 + MIR SINE MIR 21 183 -79 205 315 115 42 chr1 29909992 29910157 -212754196 + L2 LINE L2 3112 3288 -25 435 313 223 22 chr1 29910425 29911002 -212753351 + L2 LINE L2 2572 3272 0 460 287 42 30 chr1 29911449 29911616 -212752737 - MIR3 SINE MIR -22 186 18 189 0 0 0 chr1 29914507 29914528 -212749825 + (GGA)n Simple_repeat Simple_repeat 3 23 0 22 35 0 0 chr1 29917669 29917698 -212746655 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 29917800 29917822 -212746531 + GC_rich Low_complexity Low_complexity 1 22 0 2059 125 7 0 chr1 29918066 29918362 -212745991 - AluSx SINE Alu -14 298 1 632 280 22 11 chr1 29918876 29919058 -212745295 - MIR SINE MIR -14 248 65 352 318 23 8 chr1 29919192 29919321 -212745032 - MIR SINE MIR 0 262 132 306 262 28 121 chr1 29919327 29919449 -212744904 + L2 LINE L2 3144 3253 -19 1963 138 3 13 chr1 29919449 29919754 -212744599 + AluJo SINE Alu 1 302 -10 306 262 28 121 chr1 29919754 29919772 -212744581 + L2 LINE L2 3253 3271 -1 470 367 68 11 chr1 29919906 29920170 -212744183 + L2 LINE L2 3029 3307 -6 240 167 21 21 chr1 29920177 29920225 -212744128 - MIR SINE MIR -180 82 35 495 246 66 36 chr1 29920517 29920734 -212743619 - MIR SINE MIR -40 222 8 267 330 9 27 chr1 29920823 29920935 -212743418 - MER5A DNA MER1_type -35 154 45 372 181 96 14 chr1 29920952 29921039 -212743314 - MIR3 SINE MIR -47 161 65 186 265 0 0 chr1 29922309 29922358 -212741995 - MIR SINE MIR -136 126 78 212 283 17 0 chr1 29924163 29924223 -212740130 + MIR3 SINE MIR 101 161 -47 1871 122 0 31 chr1 29924730 29925016 -212739337 - AluJo SINE Alu -30 282 6 424 274 104 7 chr1 29925103 29925238 -212739115 + MIR SINE MIR 5 152 -110 216 0 0 0 chr1 29925866 29925890 -212738463 + (TG)n Simple_repeat Simple_repeat 1 24 0 232 205 0 72 chr1 29926512 29926595 -212737758 + (TG)n Simple_repeat Simple_repeat 1 77 0 209 159 23 0 chr1 29926601 29926645 -212737708 + CT-rich Low_complexity Low_complexity 2 46 0 372 234 0 0 chr1 29927341 29927482 -212736871 + GA-rich Low_complexity Low_complexity 2 142 0 219 167 0 0 chr1 29928779 29928821 -212735532 + (CACG)n Simple_repeat Simple_repeat 1 42 0 183 80 0 0 chr1 29928847 29928872 -212735481 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 179 0 0 chr1 29928896 29928935 -212735418 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr1 29928961 29928986 -212735367 + (CA)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr1 29929010 29929034 -212735319 + (CA)n Simple_repeat Simple_repeat 2 25 0 289 333 56 0 chr1 29929842 29929950 -212734403 + MIR SINE MIR 10 117 -91 203 240 60 0 chr1 29930087 29930137 -212734216 + MIR SINE MIR 118 170 -92 234 311 85 9 chr1 29930187 29930293 -212734060 - MIR SINE MIR -76 132 19 258 227 202 25 chr1 29930531 29930650 -212733703 - MIR3 SINE MIR -23 185 46 314 301 47 76 chr1 29930938 29931174 -212733179 + L1M4b LINE L1 443 671 -6188 439 329 4 7 chr1 29931915 29932138 -212732215 + GA-rich Low_complexity Low_complexity 1 222 0 188 111 28 0 chr1 29932330 29932366 -212731987 + GA-rich Low_complexity Low_complexity 2 38 0 25 31 0 0 chr1 29934245 29934277 -212730076 + GC_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr1 29934359 29934395 -212729958 + GC_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr1 29934426 29934453 -212729900 + GC_rich Low_complexity Low_complexity 1 27 0 226 127 164 0 chr1 29934866 29934921 -212729432 + MIR SINE MIR 31 94 -168 346 270 79 0 chr1 29934973 29935062 -212729291 - MIR SINE MIR -77 185 90 234 277 299 7 chr1 29936026 29936163 -212728190 - MIR3 SINE MIR -16 192 16 493 252 0 24 chr1 29938881 29939008 -212725345 - MIR3 SINE MIR -4 204 81 373 242 11 11 chr1 29939482 29939577 -212724776 - MIR SINE MIR -98 164 70 438 272 62 12 chr1 29940050 29940212 -212724141 - MIR SINE MIR -25 237 68 26 30 0 0 chr1 29941318 29941351 -212723002 + GC_rich Low_complexity Low_complexity 1 33 0 24 77 0 0 chr1 29941383 29941435 -212722918 + GC_rich Low_complexity Low_complexity 1 52 0 188 211 75 6 chr1 29941853 29941912 -212722441 + MIR3 SINE MIR 117 177 -51 231 222 56 67 chr1 29941929 29942019 -212722334 + MIR3 SINE MIR 79 167 -41 462 264 168 6 chr1 29942127 29942294 -212722059 - MIR SINE MIR -56 206 13 1122 155 57 67 chr1 29943767 29943973 -212720380 + MER33 DNA MER1_type 1 207 -2378 2211 106 3 0 chr1 29943973 29944275 -212720078 + AluSx SINE Alu 1 303 -9 1122 155 57 67 chr1 29944275 29944363 -212719990 + MER33 DNA MER1_type 207 294 -2291 2199 98 0 3 chr1 29944363 29944659 -212719694 - AluSg SINE Alu -13 297 3 1122 155 57 67 chr1 29944659 29944679 -212719674 + MER33 DNA MER1_type 294 313 -11 1153 176 48 5 chr1 29944708 29944918 -212719435 - AluJo SINE Alu -10 302 84 770 214 66 16 chr1 29945315 29945497 -212718856 + MER58A DNA MER1_type 1 191 -33 539 271 182 19 chr1 29946205 29946419 -212717934 + MIR SINE MIR 14 262 0 2283 86 3 0 chr1 29946509 29946800 -212717553 - AluSx SINE Alu -20 292 1 1110 130 125 0 chr1 29946802 29946986 -212717367 - AluJo SINE Alu -19 293 87 32 0 0 0 chr1 29946992 29947024 -212717329 + AT_rich Low_complexity Low_complexity 1 32 0 231 390 44 26 chr1 29947252 29947480 -212716873 + L2 LINE L2 2578 2809 -505 218 343 29 20 chr1 29947952 29948054 -212716299 + MIR SINE MIR 110 212 -50 691 276 36 23 chr1 29948142 29948363 -212715990 + L2 LINE L2 3090 3313 0 256 325 264 15 chr1 29948356 29948553 -212715800 - MIR SINE MIR -12 250 5 * 1562 111 172 8 chr1 29948572 29948833 -212715520 - AluSg SINE Alu -6 304 1 181 291 150 36 chr1 29948897 29949117 -212715236 + L2 LINE L2 2845 3089 -183 375 251 75 22 chr1 29949320 29949524 -212714829 + MIR SINE MIR 5 262 0 239 294 15 0 chr1 29949657 29949725 -212714628 + L2 LINE L2 3245 3313 0 * 583 239 144 22 chr1 29949716 29949896 -212714457 - MIR SINE MIR -58 204 3 532 259 54 18 chr1 29949970 29950136 -212714217 - MIR SINE MIR -10 252 81 1455 73 0 0 chr1 29950556 29950733 -212713620 + AluSq SINE Alu 1 177 -136 1251 149 47 9 chr1 29950734 29950948 -212713405 + AluJb SINE Alu 90 311 -1 736 299 63 0 chr1 29950958 29951179 -212713174 + MIR SINE MIR 23 257 -5 519 253 96 0 chr1 29951476 29951622 -212712731 + MIR SINE MIR 34 193 -69 319 350 0 0 chr1 29952818 29952920 -212711433 - MIR3 SINE MIR -52 156 54 221 269 0 0 chr1 29953324 29953376 -212710977 + L2 LINE L2 3206 3257 -15 235 218 74 23 chr1 29953454 29953542 -212710811 - MIR SINE MIR -47 161 59 369 277 116 0 chr1 29953985 29954097 -212710256 + L2 LINE L2 3189 3313 0 205 308 0 17 chr1 29954943 29955060 -212709293 + (TCTCTG)n Simple_repeat Simple_repeat 6 120 0 398 238 68 54 chr1 29956996 29957143 -212707210 + MIR3 SINE MIR 36 184 -24 777 292 69 4 chr1 29957347 29957580 -212706773 + MIR SINE MIR 14 261 -1 248 257 54 14 chr1 29958325 29958399 -212705954 + MIR3 SINE MIR 78 154 -54 231 61 0 0 chr1 29961116 29961149 -212703204 + (TG)n Simple_repeat Simple_repeat 2 34 0 268 198 9 72 chr1 29962432 29962543 -212701810 + (CA)n Simple_repeat Simple_repeat 2 105 0 213 119 0 0 chr1 29963001 29963043 -212701310 + (TG)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr1 29963042 29963062 -212701291 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 228 317 0 4 chr1 29963425 29963657 -212700696 + CT-rich Low_complexity Low_complexity 1 230 0 * 397 299 19 0 chr1 29963557 29963711 -212700642 + (TCTG)n Simple_repeat Simple_repeat 4 160 0 273 385 30 24 chr1 29965186 29965355 -212698998 + MIR3 SINE MIR 36 205 -3 200 291 13 13 chr1 29967922 29968001 -212696352 + C-rich Low_complexity Low_complexity 4 82 0 21 95 0 0 chr1 29968732 29968795 -212695558 + GC_rich Low_complexity Low_complexity 1 63 0 266 85 0 21 chr1 29968811 29968858 -212695495 + (CCCCCT)n Simple_repeat Simple_repeat 3 48 0 21 36 0 0 chr1 29969260 29969288 -212695065 + GC_rich Low_complexity Low_complexity 1 28 0 278 263 10 10 chr1 29969426 29969525 -212694828 + CT-rich Low_complexity Low_complexity 1 99 0 215 81 54 0 chr1 29969592 29969629 -212694724 + CT-rich Low_complexity Low_complexity 2 40 0 229 280 11 32 chr1 29969683 29969776 -212694577 + (CCCG)n Simple_repeat Simple_repeat 3 93 0 * 261 226 0 0 chr1 29969726 29969788 -212694565 + CT-rich Low_complexity Low_complexity 1 62 0 33 43 0 0 chr1 29969889 29969936 -212694417 + GC_rich Low_complexity Low_complexity 1 47 0 326 271 160 42 chr1 29970703 29970847 -212693506 - MIR SINE MIR -96 166 6 273 286 267 6 chr1 29972435 29972596 -212691757 + MIR SINE MIR 35 237 -25 195 299 117 0 chr1 29972800 29972877 -212691476 - MIR SINE MIR -118 144 59 347 324 92 56 chr1 29973553 29973621 -212690732 + L2 LINE L2 2650 2714 -558 2214 88 7 0 chr1 29973621 29973916 -212690437 + AluSx SINE Alu 1 297 -15 347 324 92 56 chr1 29973916 29974367 -212689986 + L2 LINE L2 2714 3190 -82 581 118 16 64 chr1 29974507 29974694 -212689659 + (TG)n Simple_repeat Simple_repeat 2 179 0 247 279 99 23 chr1 29974883 29975055 -212689298 + L2 LINE L2 2817 3001 -271 562 256 69 6 chr1 29975347 29975507 -212688846 + MIR SINE MIR 41 210 -52 616 300 109 0 chr1 29976048 29976268 -212688085 + MIR SINE MIR 12 255 -7 603 201 22 22 chr1 29976286 29976425 -212687928 - MIR SINE MIR -104 158 20 366 23 0 0 chr1 29976757 29976800 -212687553 + (CA)n Simple_repeat Simple_repeat 1 43 0 440 275 137 17 chr1 29976832 29977065 -212687288 + MIR SINE MIR 2 262 0 264 259 53 107 chr1 29977074 29977205 -212687148 + L2 LINE L2 3142 3265 -7 279 247 32 32 chr1 29978392 29978485 -212685868 + MIR3 SINE MIR 112 204 -4 2224 93 27 0 chr1 29979088 29979388 -212684965 + AluSx SINE Alu 3 310 -2 984 243 72 0 chr1 29979544 29979779 -212684574 - MIR SINE MIR 0 262 11 225 225 0 0 chr1 29979804 29979844 -212684509 + L2 LINE L2 3223 3262 -10 493 220 10 0 chr1 29979860 29979960 -212684393 - MIR SINE MIR -114 148 48 196 291 185 20 chr1 29980287 29980438 -212683915 - MIR3 SINE MIR 0 208 33 209 346 56 56 chr1 29981629 29981843 -212682510 - L2 LINE L2 -108 3164 2951 613 311 89 22 chr1 29981856 29982216 -212682137 + L2 LINE L2 2388 2771 -543 304 257 105 40 chr1 29982365 29982517 -212681836 + MIR3 SINE MIR 18 179 -29 309 292 101 0 chr1 29983026 29983166 -212681187 + MIR SINE MIR 99 254 -8 369 229 178 0 chr1 29983267 29983385 -212680968 - MIR3 SINE MIR -63 145 7 203 301 129 33 chr1 29983320 29983592 -212680761 + L2 LINE L2 1889 2186 -1128 * 313 336 100 22 chr1 29983642 29983871 -212680482 + L3 LINE CR1 912 1158 -419 296 298 45 23 chr1 29983963 29984153 -212680200 - MIR SINE MIR -2 260 14 207 294 174 66 chr1 29984246 29984866 -212679487 + L2 LINE L2 1497 2199 -1115 2186 103 0 0 chr1 29984866 29985156 -212679197 - AluSx SINE Alu -22 290 1 207 294 174 66 chr1 29985156 29985219 -212679134 + L2 LINE L2 2199 2254 -1060 246 284 0 14 chr1 29985234 29985308 -212679045 - MER91A DNA MER1_type -1 195 123 286 313 117 17 chr1 29985378 29985608 -212678745 + L2 LINE L2 2307 2559 -755 247 212 8 121 chr1 29985612 29985700 -212678653 + MIR SINE MIR 82 178 -84 2085 127 0 0 chr1 29985700 29985991 -212678362 + AluSx SINE Alu 1 291 -21 1784 181 0 10 chr1 29985997 29986290 -212678063 + AluJo SINE Alu 1 290 -22 247 212 8 121 chr1 29986290 29986390 -212677963 + MIR SINE MIR 183 250 -12 1334 156 152 30 chr1 29986408 29986737 -212677616 + AluJb SINE Alu 1 362 0 618 290 145 0 chr1 29986863 29987063 -212677290 + MIR SINE MIR 34 262 0 226 292 69 90 chr1 29987606 29987695 -212676658 + L2 LINE L2 2715 2801 -513 1768 125 86 4 chr1 29987695 29987974 -212676379 + AluSx SINE Alu 1 302 -10 226 292 69 90 chr1 29987974 29988028 -212676325 + L2 LINE L2 2801 2855 -459 2379 89 0 6 chr1 29988157 29988471 -212675882 - AluSx SINE Alu 0 312 1 1297 149 9 18 chr1 29989897 29990119 -212674234 - AluJo SINE Alu -8 304 85 438 286 0 0 chr1 29990160 29990418 -212673935 + (TG)n Simple_repeat Simple_repeat 1 258 0 293 286 0 0 chr1 29990451 29990542 -212673811 + (TG)n Simple_repeat Simple_repeat 1 91 0 2175 96 0 0 chr1 29991324 29991634 -212672719 + AluSg SINE Alu 1 310 0 1812 132 13 42 chr1 29992550 29992861 -212671492 + AluJo SINE Alu 1 302 -10 279 0 0 0 chr1 29993113 29993144 -212671209 + (CA)n Simple_repeat Simple_repeat 2 32 0 622 162 39 78 chr1 29993164 29993279 -212671074 - MIR SINE MIR -3 259 152 2140 119 0 0 chr1 29993279 29993574 -212670779 - AluSq SINE Alu -18 295 1 622 162 39 78 chr1 29993574 29993637 -212670716 - MIR SINE MIR -110 152 88 323 164 14 4 chr1 29993638 29993857 -212670496 + AluJo SINE Alu 1 302 0 896 159 96 0 chr1 29993865 29994022 -212670331 + AluJo SINE Alu 120 291 -21 384 59 0 0 chr1 29994182 29994233 -212670120 + (CA)n Simple_repeat Simple_repeat 2 52 0 334 316 79 55 chr1 29994689 29994848 -212669505 + L1M4c LINE L1 939 1093 -1650 814 165 154 11 chr1 29994848 29994873 -212669480 + MER63A DNA MER1_type 3 23 -1665 222 37 0 0 chr1 29994873 29994900 -212669453 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 814 165 154 11 chr1 29994900 29995056 -212669297 + MER63A DNA MER1_type 23 210 0 334 316 79 55 chr1 29995056 29995212 -212669141 + L1M4c LINE L1 1093 1438 -1305 591 335 69 0 chr1 29995349 29995594 -212668759 - MIR SINE MIR 0 262 1 1629 99 36 0 chr1 29995616 29995716 -212668637 - MER30 DNA MER1_type 0 230 135 2256 89 0 3 chr1 29995716 29996018 -212668335 - AluY SINE Alu -10 301 1 1629 99 36 0 chr1 29996018 29996139 -212668214 - MER30 DNA MER1_type -95 135 1 218 338 13 0 chr1 29996558 29996635 -212667718 + MIR SINE MIR 60 137 -125 227 309 164 40 chr1 29996713 29996865 -212667488 - MIR3 SINE MIR -22 186 16 499 289 98 15 chr1 29997129 29997333 -212667020 + MIR SINE MIR 32 252 -10 2208 115 0 3 chr1 29997791 29998103 -212666250 - AluSx SINE Alu -1 311 1 853 149 117 70 chr1 29999231 29999445 -212664908 - AluJo SINE Alu -8 304 81 407 262 10 0 chr1 29999583 29999686 -212664667 - MIR SINE MIR -65 143 40 22 35 0 0 chr1 29999828 29999857 -212664496 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 29999961 29999989 -212664364 + GC_rich Low_complexity Low_complexity 1 28 0 185 293 13 27 chr1 30001161 30001236 -212663117 - MIR SINE MIR -83 125 52 1680 174 6 19 chr1 30001423 30001734 -212662619 + AluJo SINE Alu 1 307 -5 2506 58 3 0 chr1 30001783 30002093 -212662260 + AluY SINE Alu 1 311 0 225 0 0 0 chr1 30002384 30002409 -212661944 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr1 30002408 30002431 -212661922 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 207 357 132 29 chr1 30002824 30003104 -212661249 + L2 LINE L2 2945 3253 -19 287 316 0 22 chr1 30003113 30003252 -212661101 + (TGAA)n Simple_repeat Simple_repeat 1 136 0 2142 99 3 0 chr1 30003271 30003563 -212660790 + AluSx SINE Alu 1 293 -19 481 317 68 78 chr1 30003572 30004065 -212660288 + L2 LINE L2 2696 3185 -128 779 240 109 13 chr1 30004171 30004258 -212660095 + MIR SINE MIR 2 79 -183 2218 108 24 0 chr1 30004258 30004554 -212659799 - AluSx SINE Alu -9 303 1 779 240 109 13 chr1 30004554 30004695 -212659658 + MIR SINE MIR 79 252 -10 243 0 0 0 chr1 30004700 30004727 -212659626 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 863 149 0 144 chr1 30004804 30004999 -212659354 + FRAM SINE Alu 1 166 -10 279 301 74 59 chr1 30005038 30005241 -212659112 + L2 LINE L2 930 1135 -2179 1547 110 4 22 chr1 30005248 30005476 -212658877 - AluSp SINE Alu -5 308 85 1127 76 0 0 chr1 30005486 30005618 -212658735 - AluSp SINE Alu -181 132 1 292 293 94 26 chr1 30005629 30005820 -212658533 + L2 LINE L2 1168 1371 -1943 238 300 100 29 chr1 30005820 30005960 -212658393 + L2 LINE L2 1560 1709 -1605 2388 96 0 3 chr1 30006064 30006366 -212657987 + AluSq SINE Alu 1 301 -12 2247 127 0 3 chr1 30006366 30006673 -212657680 + AluSq SINE Alu 3 308 -5 541 212 0 17 chr1 30006683 30006801 -212657552 + MLT1B LTR MaLR 207 322 -68 225 204 19 0 chr1 30006815 30006869 -212657484 + L1MC4 LINE L1 7120 7174 -868 1990 135 3 39 chr1 30006875 30007186 -212657167 - AluSx SINE Alu -12 300 1 2095 148 0 3 chr1 30007254 30007557 -212656796 + AluSx SINE Alu 9 310 -2 1002 213 22 70 chr1 30007573 30007681 -212656672 - MLT1A2 LTR MaLR -110 264 152 1743 166 21 10 chr1 30007681 30007970 -212656383 - AluJb SINE Alu -20 292 1 1002 213 22 70 chr1 30007970 30008134 -212656219 - MLT1A2 LTR MaLR -222 152 5 2808 22 0 6 chr1 30008185 30008497 -212655856 + AluY SINE Alu 1 310 -1 2210 79 18 7 chr1 30008654 30008962 -212655391 + AluSg SINE Alu 1 311 0 236 274 0 27 chr1 30008992 30009065 -212655288 + L1MC4 LINE L1 7600 7670 -372 219 331 81 8 chr1 30009095 30009219 -212655134 + L2 LINE L2 3161 3293 -20 313 316 32 51 chr1 30009362 30009520 -212654833 + L3 LINE CR1 1282 1436 -141 346 268 79 8 chr1 30009773 30009892 -212654461 + MIR3 SINE MIR 44 170 -38 435 311 113 0 chr1 30010089 30010266 -212654087 + MIR SINE MIR 51 247 -15 329 133 17 50 chr1 30010399 30010459 -212653894 + L2 LINE L2 3256 3313 0 403 248 109 0 chr1 30010515 30010616 -212653737 - MIR SINE MIR -103 159 48 477 249 185 21 chr1 30012897 30013086 -212651267 - MIR SINE MIR -6 256 37 550 280 89 0 chr1 30013115 30013283 -212651070 + MIR SINE MIR 30 212 -50 414 0 0 0 chr1 30013547 30013593 -212650760 + (CA)n Simple_repeat Simple_repeat 2 47 0 2230 96 0 14 chr1 30013596 30013887 -212650466 - AluSx SINE Alu -25 287 1 271 257 158 10 chr1 30013888 30013989 -212650364 - MIR SINE MIR -112 150 35 395 254 69 47 chr1 30014310 30014488 -212649865 - MIR3 SINE MIR -36 172 11 1746 196 0 0 chr1 30014637 30014918 -212649435 - AluJo SINE Alu -17 295 15 513 270 92 17 chr1 30015609 30015783 -212648570 - MIR SINE MIR 0 262 76 187 333 67 17 chr1 30016122 30016242 -212648111 + L3b LINE CR1 1269 1394 -189 271 229 12 48 chr1 30016575 30016658 -212647695 - MIR SINE MIR -11 251 172 * 773 213 234 60 chr1 30016641 30017159 -212647194 - L2 LINE L2 0 3313 2718 1805 98 53 56 chr1 30017160 30017487 -212646866 - AluSx SINE Alu 0 326 1 2314 110 3 0 chr1 30017500 30017800 -212646553 - AluSp SINE Alu -12 301 1 1196 273 68 47 chr1 30017822 30018219 -212646134 - L1MC4a LINE L1 -748 5398 5011 1880 205 28 15 chr1 30018219 30018610 -212645743 - MSTD LTR MaLR 0 396 1 1196 273 68 47 chr1 30018610 30018733 -212645620 - L1MC4a LINE L1 -1135 5011 4892 2627 61 0 6 chr1 30018733 30019046 -212645307 - AluSp SINE Alu -2 311 1 1196 273 68 47 chr1 30019046 30019599 -212644754 - L1MC4a LINE L1 -1254 4892 4753 2175 108 0 0 chr1 30019600 30019899 -212644454 - AluSx SINE Alu 0 301 3 1222 156 0 70 chr1 30019905 30020149 -212644204 - AluSg/x SINE Alu -1 309 83 764 251 170 115 chr1 30020268 30020719 -212643634 - L2 LINE L2 -1178 2136 1711 2089 113 7 24 chr1 30020719 30020870 -212643483 - AluSx SINE Alu -26 286 134 188 33 0 33 chr1 30020870 30020900 -212643453 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2460 58 7 3 chr1 30020902 30021194 -212643159 - AluSp SINE Alu -20 293 1 2089 113 7 24 chr1 30021194 30021330 -212643023 - AluSx SINE Alu -179 133 1 764 251 170 115 chr1 30021330 30021550 -212642803 - L2 LINE L2 -1603 1711 1428 2015 164 3 0 chr1 30021550 30021848 -212642505 - AluJb SINE Alu -13 299 1 1729 181 7 3 chr1 30021848 30022135 -212642218 - AluJo SINE Alu -18 294 6 4127 93 39 5 chr1 30022576 30023137 -212641216 - LTR19B LTR ERV1 0 580 1 1038 231 179 46 chr1 30023209 30023560 -212640793 + L2 LINE L2 2138 2535 -779 2519 225 78 14 chr1 30023678 30024003 -212640350 + Zaphod DNA AcHobo 39 342 -3689 2369 98 3 0 chr1 30024003 30024308 -212640045 + AluSp SINE Alu 1 306 -7 2519 225 78 14 chr1 30024308 30024698 -212639655 + Zaphod DNA AcHobo 342 800 -3231 1931 174 3 3 chr1 30024710 30025020 -212639333 - AluJb SINE Alu -2 310 1 2356 93 0 10 chr1 30025029 30025340 -212639013 - AluSg SINE Alu 0 310 3 1209 173 48 5 chr1 30025391 30025599 -212638754 - AluJo SINE Alu -12 300 84 817 203 66 16 chr1 30025996 30026178 -212638175 + MER58A DNA MER1_type 1 191 -33 558 262 182 19 chr1 30026886 30027100 -212637253 + MIR SINE MIR 14 262 0 2211 108 14 0 chr1 30027190 30027478 -212636875 - AluSx SINE Alu -20 292 1 1062 133 28 11 chr1 30027478 30027658 -212636695 - THE1B LTR MaLR -181 183 1 10264 66 25 113 chr1 30027658 30028751 -212635602 - THE1B-int LTR MaLR 0 1580 695 2408 103 3 0 chr1 30028751 30029063 -212635290 - AluSp SINE Alu 0 313 1 10264 66 25 113 chr1 30029063 30029702 -212634651 - THE1B-int LTR MaLR -885 695 1 2423 120 19 25 chr1 30029702 30030068 -212634285 - THE1B LTR MaLR 0 364 1 950 128 0 0 chr1 30030082 30030215 -212634138 - FLAM_C SINE Alu 0 133 1 798 256 55 35 chr1 30030217 30030529 -212633824 - LTR24B LTR ERV1 -189 387 70 1832 190 103 22 chr1 30030533 30030981 -212633372 + LTR2B LTR ERV1 7 490 0 3203 212 71 62 chr1 30031046 30031509 -212632844 - MER21A-int LTR ERV1 -1742 4972 4515 2070 143 0 16 chr1 30031509 30031824 -212632529 - AluSx SINE Alu -2 310 1 3203 212 71 62 chr1 30031824 30032419 -212631934 - MER21A-int LTR ERV1 -2199 4515 3927 2425 104 0 0 chr1 30032419 30032728 -212631625 + AluSx SINE Alu 1 309 -3 3203 212 71 62 chr1 30032728 30032900 -212631453 - MER21A-int LTR ERV1 -2787 3927 1194 342 107 27 27 chr1 30032901 30032976 -212631377 + CT-rich Low_complexity Low_complexity 3 77 0 1061 213 8 46 chr1 30035322 30035585 -212628768 - MER21A-int LTR ERV1 -2563 4195 3943 2249 141 48 52 chr1 30035585 30036045 -212628308 - LTR32 LTR ERVL 0 471 14 655 161 18 0 chr1 30036045 30036157 -212628196 - MER21A-int LTR ERV1 -2810 3948 3835 1283 166 94 107 chr1 30036158 30036450 -212627903 - LTR29 LTR ERV1 0 622 337 1439 207 81 0 chr1 30036450 30036721 -212627632 + AluJo SINE Alu 1 293 -19 1283 166 94 107 chr1 30036721 30036897 -212627456 - LTR29 LTR ERV1 -285 337 160 21 0 0 0 chr1 30036960 30036981 -212627372 + AT_rich Low_complexity Low_complexity 1 21 0 4058 186 42 4 chr1 30037041 30037817 -212626536 - MER21A-int LTR ERV1 -3384 807 2 723 163 42 20 chr1 30037833 30038000 -212626353 - MER21A LTR ERV1 -1 891 681 3905 130 39 19 chr1 30038000 30038623 -212625730 - MER41B LTR ERV1 0 635 1 19267 121 19 34 chr1 30038623 30041575 -212622778 - MER41B-int LTR ERV1 0 5946 3053 693 118 20 0 chr1 30041575 30041677 -212622676 + U6 snRNA snRNA 1 104 -3 19267 121 19 34 chr1 30041677 30042128 -212622225 - MER41B-int LTR ERV1 -2893 3053 2596 2415 78 0 0 chr1 30042130 30042423 -212621930 - AluSq SINE Alu -16 297 5 2532 73 7 0 chr1 30042429 30042732 -212621621 - AluSc SINE Alu -3 306 2 3626 127 2 7 chr1 30042751 30042933 -212621420 - MER41B LTR ERV1 -91 544 363 2400 96 0 0 chr1 30042933 30043234 -212621119 - AluSg SINE Alu -9 301 1 213 39 0 0 chr1 30043234 30043260 -212621093 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2101 118 4 0 chr1 30043260 30043539 -212620814 - AluSx SINE Alu -28 284 5 3626 127 2 7 chr1 30043539 30043899 -212620454 - MER41B LTR ERV1 -269 366 3 3285 175 67 24 chr1 30043899 30044241 -212620112 - MER21B LTR ERV1 -177 686 360 1767 168 19 23 chr1 30044241 30044550 -212619803 - AluJb SINE Alu -4 308 1 3285 175 67 24 chr1 30044550 30044865 -212619488 - MER21B LTR ERV1 -503 360 1 2578 68 0 3 chr1 30044936 30045243 -212619110 + AluY SINE Alu 1 306 -5 1261 128 0 0 chr1 30045262 30045449 -212618904 - Tigger3(Golem) DNA MER2_type -3 3026 2840 2285 76 3 54 chr1 30045549 30045866 -212618487 - AluSx SINE Alu -11 301 1 2283 104 7 0 chr1 30045866 30046162 -212618191 - AluSx SINE Alu -13 299 1 549 96 0 0 chr1 30046163 30046246 -212618107 + L1MB5 LINE L1 6086 6168 -6 1153 149 28 142 chr1 30046260 30046422 -212617931 - AluJo SINE Alu -15 287 108 255 31 0 0 chr1 30046422 30046454 -212617899 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2194 110 0 0 chr1 30046454 30046735 -212617618 - AluSx SINE Alu -31 281 1 1153 149 28 142 chr1 30046735 30046894 -212617459 - AluJo SINE Alu -192 110 2 32 0 0 0 chr1 30046927 30046959 -212617394 + AT_rich Low_complexity Low_complexity 1 32 0 567 264 152 39 chr1 30047729 30048059 -212616294 - L2 LINE L2 -493 2821 2455 230 218 18 0 chr1 30048059 30048114 -212616239 - L2 LINE L2 0 3313 3258 291 283 109 51 chr1 30048170 30048308 -212616045 + MIR3 SINE MIR 18 163 -45 192 318 24 12 chr1 30048372 30048457 -212615896 + MIR SINE MIR 59 144 -118 195 234 0 0 chr1 30048807 30048854 -212615499 + L2 LINE L2 2721 2767 -547 329 288 82 29 chr1 30049114 30049284 -212615069 + L2 LINE L2 2832 3010 -262 2524 89 0 3 chr1 30049306 30049619 -212614734 + AluSx SINE Alu 1 312 0 845 149 0 0 chr1 30049751 30049872 -212614481 + AluJo/FLAM SINE Alu 9 129 -183 1935 91 14 22 chr1 30049872 30050148 -212614205 - AluSp SINE Alu -19 294 21 1619 63 0 0 chr1 30050265 30050454 -212613899 - AluSg/x SINE Alu -12 300 112 662 257 6 17 chr1 30050463 30050642 -212613711 + MARNA DNA Mariner 224 400 -186 2269 112 0 7 chr1 30050718 30051023 -212613330 + AluSx SINE Alu 1 303 -9 2018 137 7 7 chr1 30051147 30051440 -212612913 + AluSx SINE Alu 1 293 -19 204 244 0 0 chr1 30052069 30052110 -212612243 - MIR SINE MIR 0 262 222 311 298 93 19 chr1 30052436 30052641 -212611712 - L2 LINE L2 -223 3049 2830 1009 181 23 6 chr1 30052765 30052936 -212611417 + FAM SINE Alu 2 175 0 217 184 41 0 chr1 30053184 30053233 -212611120 - MIR3 SINE MIR -52 156 106 1417 170 18 43 chr1 30053766 30054048 -212610305 + AluJo SINE Alu 7 281 -31 273 344 10 0 chr1 30054331 30054427 -212609926 + MIR SINE MIR 16 112 -150 2154 95 0 13 chr1 30054427 30054732 -212609621 + AluSx SINE Alu 1 301 -11 310 261 0 0 chr1 30054762 30054827 -212609526 + MIR SINE MIR 90 154 -108 219 36 0 0 chr1 30055344 30055372 -212608981 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1838 168 96 3 chr1 30055372 30055705 -212608648 - MSTA LTR MaLR -64 364 1 661 195 50 48 chr1 30056005 30056059 -212608294 - MER66-int LTR ERV1 -2603 4073 4021 1596 179 3 3 chr1 30056059 30056350 -212608003 - AluJo SINE Alu -21 291 1 661 195 50 48 chr1 30056350 30056608 -212607745 - MER66-int LTR ERV1 -2655 4021 1889 1129 186 4 26 chr1 30056674 30056900 -212607453 - AluJb SINE Alu -5 307 87 1522 118 156 7 chr1 30056901 30057171 -212607182 - AluSq SINE Alu -2 311 2 1581 195 10 0 chr1 30057223 30057521 -212606832 - AluJo SINE Alu -9 303 3 1047 148 22 181 chr1 30057523 30057926 -212606427 - AluYb8 SINE Alu 0 318 1 310 90 11 214 chr1 30057926 30057963 -212606390 + MSTB LTR MaLR 356 399 -27 1931 112 4 0 chr1 30057963 30058232 -212606121 - AluSc SINE Alu -39 270 1 2257 101 0 0 chr1 30058237 30058544 -212605809 - AluSc SINE Alu -2 307 1 310 90 11 214 chr1 30058544 30058589 -212605764 + MSTB LTR MaLR 403 426 0 3161 166 2 2 chr1 30058589 30059124 -212605229 + MSTB-int LTR MaLR 1 535 -1116 377 82 16 0 chr1 30059132 30059193 -212605160 - L1PB2 LINE L1 0 6151 6090 23 0 0 0 chr1 30059705 30059728 -212604625 + AT_rich Low_complexity Low_complexity 1 23 0 260 279 82 0 chr1 30059756 30059817 -212604536 - MIR SINE MIR -114 94 29 316 234 139 3 chr1 30059881 30060006 -212604347 - MIR SINE MIR -69 139 46 274 137 39 0 chr1 30060290 30060341 -212604012 - L1M4 LINE L1 -1131 5015 4963 2098 113 7 7 chr1 30060402 30060704 -212603649 - AluSg SINE Alu -8 302 1 1303 157 29 9 chr1 30060725 30060935 -212603418 - MER58A DNA MER1_type 0 224 11 642 166 17 9 chr1 30060937 30060960 -212603393 + L1P5 LINE L1 5653 5674 -477 2011 132 0 3 chr1 30060960 30061256 -212603097 + AluSx SINE Alu 1 295 -17 2284 91 0 7 chr1 30061258 30061566 -212602787 + AluSc SINE Alu 1 306 -3 642 166 17 9 chr1 30061566 30061671 -212602682 + L1P5 LINE L1 5674 5784 -367 2081 111 0 26 chr1 30061672 30061979 -212602374 + AluSg1 SINE Alu 1 299 -10 1063 132 25 0 chr1 30061980 30062139 -212602214 + AluJb SINE Alu 135 297 -15 938 245 122 15 chr1 30063528 30063863 -212600490 + L2 LINE L2 2170 2540 -774 992 206 34 22 chr1 30063864 30063893 -212600460 + L1MB4 LINE L1 5060 5087 -1059 1802 146 20 3 chr1 30063893 30064194 -212600159 - AluSx SINE Alu -6 306 1 992 206 34 22 chr1 30064194 30064431 -212599922 + L1MB4 LINE L1 5087 5329 -817 879 151 0 26 chr1 30064431 30064583 -212599770 + FRAM SINE Alu 13 160 -16 740 107 0 126 chr1 30064640 30064799 -212599554 + MLT1A1 LTR MaLR 227 365 0 1356 142 83 35 chr1 30064799 30065087 -212599266 + L1MB4 LINE L1 5729 6030 -150 1604 128 3 84 chr1 30065087 30065407 -212598946 - AluJb SINE Alu -17 295 2 879 300 47 25 chr1 30065469 30065959 -212598394 - L1M4 LINE L1 -893 5253 4753 2040 108 0 0 chr1 30065960 30066259 -212598094 - AluSx SINE Alu 0 301 3 1080 138 0 22 chr1 30066268 30066449 -212597904 - AluSc SINE Alu -4 305 129 2140 112 3 0 chr1 30066455 30066758 -212597595 - AluSx SINE Alu -8 304 1 455 382 0 0 chr1 30067128 30067412 -212596941 + C-rich Low_complexity Low_complexity 1 284 0 454 211 19 93 chr1 30067809 30067970 -212596383 + MIR SINE MIR 85 233 -29 2860 173 55 57 chr1 30068133 30068458 -212595895 - MER21B LTR ERV1 -61 802 478 1683 180 0 0 chr1 30068458 30068753 -212595600 - AluJb SINE Alu -17 295 1 2860 173 55 57 chr1 30068753 30069148 -212595205 - MER21B LTR ERV1 -385 478 1 648 244 39 33 chr1 30069350 30069530 -212594823 - MIR SINE MIR -45 217 37 2299 69 0 20 chr1 30069546 30069852 -212594501 - AluY SINE Alu -11 300 1 229 241 103 17 chr1 30069986 30070044 -212594309 - MIR SINE MIR -61 147 85 306 320 10 10 chr1 30070724 30070827 -212593526 - MIR SINE MIR 0 262 160 2405 310 89 16 chr1 30070876 30071609 -212592744 - ERVL LTR ERVL -1125 4639 3802 207 0 0 0 chr1 30071609 30071632 -212592721 + (TC)n Simple_repeat Simple_repeat 2 24 0 2405 310 89 16 chr1 30071632 30071966 -212592387 - ERVL LTR ERVL -1962 3802 3494 2121 109 6 10 chr1 30071993 30072306 -212592047 - AluSx SINE Alu 0 312 1 1618 186 0 3 chr1 30072336 30072626 -212591727 - AluJo SINE Alu -23 289 1 794 119 0 0 chr1 30072868 30072977 -212591376 - MER7A DNA MER2_type -239 107 1 207 204 0 0 chr1 30072977 30073021 -212591332 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 264 170 43 0 chr1 30073023 30073070 -212591283 + MLT2D LTR ERVL 366 414 0 330 270 34 22 chr1 30073073 30073162 -212591191 - ERVL LTR ERVL -3486 2278 2189 * 660 291 67 32 chr1 30073148 30073491 -212590862 - ERVL LTR ERVL -2909 2087 1733 666 125 80 0 chr1 30073497 30073609 -212590744 + FRAM SINE Alu 44 164 -12 27 0 0 0 chr1 30073682 30073709 -212590644 + AT_rich Low_complexity Low_complexity 1 27 0 346 358 91 30 chr1 30073753 30074111 -212590242 - ERVL LTR ERVL -3478 1518 1127 2056 77 0 7 chr1 30074111 30074385 -212589968 + AluSg SINE Alu 39 310 0 346 358 91 30 chr1 30074385 30074467 -212589886 - ERVL LTR ERVL -3869 1127 1051 344 236 107 18 chr1 30074481 30074595 -212589758 - MLT1G1 LTR MaLR 0 595 426 361 184 193 55 chr1 30074596 30074705 -212589648 - MLT1H LTR MaLR -423 126 3 414 351 84 50 chr1 30074709 30075304 -212589049 - ERVL LTR ERVL -3957 1039 425 2426 87 0 0 chr1 30075306 30075618 -212588735 - AluSx SINE Alu 0 312 1 399 185 423 0 chr1 30076158 30076288 -212588065 - L2 LINE L2 -526 2788 2604 2166 251 85 26 chr1 30076290 30076903 -212587450 - MLT2F LTR ERVL -8 655 7 262 241 17 0 chr1 30076910 30076968 -212587385 - L2 LINE L2 -704 2610 2552 2178 132 23 94 chr1 30076972 30077258 -212587095 + MER65A LTR ERV1 1 306 -139 2305 88 0 0 chr1 30077258 30077565 -212586788 + AluY SINE Alu 1 307 -4 2178 132 23 94 chr1 30077565 30077623 -212586730 + MER65A LTR ERV1 306 367 -78 2074 48 0 0 chr1 30077623 30077894 -212586459 + AluY SINE Alu 37 307 0 2178 132 23 94 chr1 30077894 30078026 -212586327 + MER65A LTR ERV1 367 445 0 1900 214 88 68 chr1 30078032 30078718 -212585635 + MER65A-int LTR ERV1 11 709 -4162 425 211 72 68 chr1 30078718 30079187 -212585166 + MER65-int LTR ERV1 1563 2028 -2843 2251 112 0 0 chr1 30079187 30079499 -212584854 + AluSq SINE Alu 1 312 -1 425 211 72 68 chr1 30079499 30079539 -212584814 + MER65-int LTR ERV1 2028 2508 -2363 1234 99 33 11 chr1 30079582 30079785 -212584568 + AluSg/x SINE Alu 100 306 0 21 0 0 0 chr1 30079826 30079847 -212584506 + AT_rich Low_complexity Low_complexity 1 21 0 1172 106 0 119 chr1 30079847 30080073 -212584280 + AluSq SINE Alu 1 199 -114 268 274 71 12 chr1 30080358 30080442 -212583911 - ERVL LTR ERVL -2549 3215 3127 2212 64 0 0 chr1 30080481 30080791 -212583562 - AluY SINE Alu 0 310 1 2846 142 172 75 chr1 30080795 30080904 -212583449 - MER21B LTR ERV1 -23 840 743 2300 81 3 3 chr1 30080904 30081213 -212583140 - AluSp SINE Alu -4 309 1 2846 142 172 75 chr1 30081213 30081243 -212583110 - MER21B LTR ERV1 -120 743 717 884 75 0 0 chr1 30081243 30081350 -212583003 - U6 snRNA snRNA 0 107 1 1859 122 39 0 chr1 30081350 30081636 -212582717 - AluJb SINE Alu -15 297 1 2846 142 172 75 chr1 30081636 30082175 -212582178 - MER21B LTR ERV1 -145 718 94 762 212 0 0 chr1 30082175 30082307 -212582046 + FLAM_A SINE Alu 6 137 -5 402 171 71 0 chr1 30082307 30082377 -212581976 - MER21B LTR ERV1 -755 108 34 587 165 0 0 chr1 30082388 30082479 -212581874 - MER21B LTR ERV1 -485 378 288 2060 122 14 0 chr1 30082536 30082830 -212581523 - AluSx SINE Alu -14 298 1 854 79 0 0 chr1 30082856 30082970 -212581383 - L1PA8 LINE L1 -1 6171 6058 2053 84 47 7 chr1 30083005 30083304 -212581049 + AluY SINE Alu 1 311 0 803 131 7 15 chr1 30083324 30083461 -212580892 + AluSg/x SINE Alu 165 300 -12 1248 117 0 0 chr1 30083479 30083650 -212580703 + AluJb SINE Alu 132 302 -10 5340 121 47 87 chr1 30083669 30084691 -212579662 + MER21-int LTR ERV1 3160 4140 -51 1043 128 0 0 chr1 30084733 30084882 -212579471 - AluJb SINE Alu -32 280 132 244 247 11 90 chr1 30085024 30085113 -212579240 - L2 LINE L2 -69 3244 3163 1782 178 0 0 chr1 30085643 30085947 -212578406 - AluJo SINE Alu -8 304 1 372 147 0 88 chr1 30086135 30086203 -212578150 - AluSg/x SINE Alu -106 194 133 1703 165 13 0 chr1 30086205 30086508 -212577845 - AluSx SINE Alu 0 312 6 317 331 23 15 chr1 30086526 30086656 -212577697 + L1MEc LINE L1 2240 2370 -4026 303 213 117 43 chr1 30086694 30086788 -212577565 + MIR SINE MIR 50 150 -112 2090 92 7 3 chr1 30087427 30087722 -212576631 - AluSg SINE Alu -14 296 1 2013 97 3 24 chr1 30088128 30088453 -212575900 + AluSx SINE Alu 1 319 0 198 0 0 0 chr1 30088752 30088774 -212575579 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1906 126 14 3 chr1 30088774 30089060 -212575293 + AluSc SINE Alu 1 289 -20 2328 74 3 7 chr1 30089076 30089385 -212574968 - AluY SINE Alu -1 310 3 39 0 0 0 chr1 30089387 30089426 -212574927 + AT_rich Low_complexity Low_complexity 1 39 0 1328 180 20 65 chr1 30089746 30090052 -212574301 + AluJo SINE Alu 1 292 -10 818 191 12 24 chr1 30090141 30090309 -212574044 - MER4D LTR ERV1 -8 895 730 1224 161 134 27 chr1 30090409 30090670 -212573683 - AluJb SINE Alu -15 297 9 2193 92 7 0 chr1 30090684 30090976 -212573377 - AluSq SINE Alu -19 294 1 350 257 14 0 chr1 30090976 30091050 -212573303 - LTR39 LTR ERV1 -306 477 403 2016 122 7 0 chr1 30091050 30091346 -212573007 - AluSx SINE Alu -10 302 5 1745 126 60 0 chr1 30091407 30091676 -212572677 - MER49 LTR ERV1 -638 285 1 566 165 10 0 chr1 30091935 30092032 -212572321 + MSTB2 LTR MaLR 360 457 0 212 304 130 0 chr1 30092044 30092159 -212572194 + L2 LINE L2 2633 2762 -552 1089 209 96 10 chr1 30092373 30092665 -212571688 + L1MC5 LINE L1 7260 7576 -385 189 0 0 0 chr1 30092673 30092694 -212571659 + (A)n Simple_repeat Simple_repeat 1 21 0 1236 88 6 0 chr1 30092767 30092938 -212571415 - AluSg/x SINE Alu -3 309 138 329 242 50 50 chr1 30092939 30092993 -212571360 + L1MC5 LINE L1 7647 7700 -261 2292 93 3 0 chr1 30092993 30093305 -212571048 + AluSp SINE Alu 1 313 0 329 242 50 50 chr1 30093305 30093370 -212570983 + L1MC5 LINE L1 7699 7766 -195 1341 196 0 39 chr1 30093386 30093671 -212570682 + AluJo SINE Alu 1 274 -38 462 212 20 0 chr1 30093832 30093931 -212570422 + L1MC5 LINE L1 7805 7905 -56 224 347 0 0 chr1 30093968 30094040 -212570313 + L2 LINE L2 3025 3096 -176 768 321 97 16 chr1 30094703 30095086 -212569267 - L2 LINE L2 -4 3309 2896 21 0 0 0 chr1 30095261 30095282 -212569071 + AT_rich Low_complexity Low_complexity 1 21 0 201 209 121 44 chr1 30095363 30095454 -212568899 - MIR SINE MIR -88 120 23 246 343 214 14 chr1 30095993 30096133 -212568220 - MIR SINE MIR -6 256 89 2130 125 3 3 chr1 30096599 30096911 -212567442 + AluSx SINE Alu 1 312 0 259 225 28 0 chr1 30098075 30098146 -212566207 + (TA)n Simple_repeat Simple_repeat 1 73 0 227 349 51 23 chr1 30098209 30098424 -212565929 - L2 LINE L2 -528 2786 2566 2319 85 3 0 chr1 30098807 30099113 -212565240 - AluSp SINE Alu -6 307 1 511 164 0 0 chr1 30099311 30099384 -212564969 - AluS SINE Alu -235 77 5 1724 147 17 10 chr1 30099391 30099683 -212564670 - AluSx SINE Alu -18 294 1 1166 141 11 159 chr1 30099901 30100097 -212564256 + MER8 DNA MER2_type 4 227 -12 2109 115 0 3 chr1 30100097 30100393 -212563960 + AluSg SINE Alu 1 295 -15 1166 141 11 159 chr1 30100393 30100416 -212563937 + MER8 DNA MER2_type 227 180 -59 2129 97 0 7 chr1 30100416 30100727 -212563626 + AluSx SINE Alu 1 309 0 1166 141 11 159 chr1 30100727 30100780 -212563573 + MER8 DNA MER2_type 179 238 -1 877 157 16 32 chr1 30100964 30101138 -212563215 + MER69A DNA AcHobo 1 169 -8 1725 158 3 10 chr1 30101209 30101506 -212562847 - AluJb SINE Alu -14 298 4 302 280 13 0 chr1 30101707 30101782 -212562571 - MIR SINE MIR -66 196 121 349 154 22 199 chr1 30101877 30101917 -212562436 - MER81 DNA DNA -1 113 68 2241 86 3 0 chr1 30101917 30102218 -212562135 - AluY SINE Alu -9 302 1 349 154 22 199 chr1 30102218 30102313 -212562040 - MER81 DNA DNA -46 68 2 275 205 121 12 chr1 30102415 30102487 -212561866 - MIR SINE MIR -166 96 13 769 163 8 0 chr1 30102487 30102610 -212561743 - FLAM_C SINE Alu -9 124 1 4383 45 13 2 chr1 30102737 30103274 -212561079 + L1PA4 LINE L1 5612 6154 -1 2010 74 24 34 chr1 30103511 30103829 -212560524 + AluY SINE Alu 1 311 0 310 255 88 0 chr1 30104387 30104489 -212559864 - MIR3 SINE MIR -8 200 90 418 256 63 63 chr1 30104523 30104563 -212559790 - MIR SINE MIR -48 214 175 2548 151 58 13 chr1 30104563 30105028 -212559325 + MER66B LTR ERV1 1 486 0 418 256 63 63 chr1 30105028 30105178 -212559175 - MIR SINE MIR -86 176 24 214 309 191 7 chr1 30105186 30105305 -212559048 + MIR SINE MIR 17 155 -99 1938 144 67 9 chr1 30105389 30105735 -212558618 + MER47A DNA MER2_type 1 366 0 401 258 117 17 chr1 30105837 30105957 -212558396 + MIR SINE MIR 119 250 -12 958 248 33 33 chr1 30106114 30106314 -212558039 - AluJo SINE Alu 0 302 103 1548 148 4 12 chr1 30106314 30106570 -212557783 + AluJb SINE Alu 7 260 -52 314 0 49 0 chr1 30106572 30106613 -212557740 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 958 248 33 33 chr1 30106613 30106711 -212557642 - AluJo SINE Alu -199 103 1 292 280 124 6 chr1 30107232 30107397 -212556956 - MIR SINE MIR -62 146 14 261 345 5 0 chr1 30107773 30107880 -212556473 - MIR SINE MIR -89 119 7 295 290 43 11 chr1 30108044 30108137 -212556216 + MIR SINE MIR 112 207 -55 941 252 84 29 chr1 30108197 30108578 -212555775 - L2 LINE L2 -2 3311 2910 348 164 0 0 chr1 30108758 30108825 -212555528 + (CA)n Simple_repeat Simple_repeat 1 67 0 1757 117 37 40 chr1 30109170 30109373 -212554980 - AluSx SINE Alu -14 298 95 2150 80 40 0 chr1 30109373 30109672 -212554681 - AluSp SINE Alu -2 311 1 1757 117 37 40 chr1 30109672 30109767 -212554586 - AluSx SINE Alu -217 95 1 328 226 19 66 chr1 30109905 30109997 -212554356 + Charlie7 DNA MER1_type 1 89 -2523 822 142 0 30 chr1 30109997 30110131 -212554222 - FLAM_C SINE Alu -3 130 1 328 226 19 66 chr1 30110131 30110144 -212554209 + Charlie7 DNA MER1_type 89 101 -2511 2112 104 3 0 chr1 30110931 30111228 -212553125 + AluY SINE Alu 14 311 0 2269 82 0 0 chr1 30111585 30111877 -212552476 - AluY SINE Alu -19 292 1 423 308 82 19 chr1 30112161 30112320 -212552033 - MIR SINE MIR -47 215 47 197 204 93 0 chr1 30113660 30113714 -212550639 - MIR SINE MIR -88 174 116 1666 153 7 17 chr1 30114175 30114462 -212549891 - AluJb SINE Alu -16 296 13 2150 98 0 3 chr1 30114475 30114772 -212549581 - AluSx SINE Alu -16 296 1 825 282 67 30 chr1 30115651 30116052 -212548301 + L2 LINE L2 1739 2154 -1160 1407 116 0 0 chr1 30116095 30116293 -212548060 + AluSg/x SINE Alu 93 290 -22 2340 52 0 58 chr1 30116294 30116621 -212547732 + AluY SINE Alu 1 308 -3 534 266 123 32 chr1 30116648 30117052 -212547301 + L2 LINE L2 2767 3295 -18 1239 161 118 18 chr1 30117052 30117331 -212547022 - AluJo SINE Alu -5 307 1 1145 88 0 35 chr1 30118853 30119024 -212545329 - AluSg/x SINE Alu -11 301 137 305 252 222 22 chr1 30119047 30119277 -212545076 + L1ME4a LINE L1 5611 5886 -235 1953 109 0 51 chr1 30119408 30119720 -212544633 - AluSc SINE Alu -13 296 1 798 164 0 0 chr1 30119802 30119930 -212544423 + FLAM_C SINE Alu 14 141 -2 1140 180 0 5 chr1 30119954 30120154 -212544199 + AluSx SINE Alu 1 199 -113 502 86 29 0 chr1 30120154 30120224 -212544129 + AluSq/x SINE Alu 67 138 -175 473 98 0 0 chr1 30120324 30120385 -212543968 - Alu SINE Alu -256 62 2 2011 132 0 3 chr1 30120388 30120684 -212543669 - AluSx SINE Alu -17 295 1 1303 157 29 9 chr1 30120709 30120919 -212543434 + MER58A DNA MER1_type 11 224 0 330 103 56 95 chr1 30120917 30120940 -212543413 - Zaphod DNA AcHobo -3041 990 968 * 2219 113 0 0 chr1 30120940 30121242 -212543111 + AluSx SINE Alu 1 302 -10 330 103 56 95 chr1 30121242 30121344 -212543009 - Zaphod DNA AcHobo -3063 968 870 742 176 0 21 chr1 30121349 30121491 -212542862 - FLAM_C SINE Alu -3 140 2 905 194 6 0 chr1 30121534 30121704 -212542649 + AluJo SINE Alu 121 291 -21 2292 83 3 6 chr1 30121714 30122026 -212542327 + AluY SINE Alu 1 311 0 1753 177 3 3 chr1 30122035 30122345 -212542008 + AluJb SINE Alu 1 310 -2 2732 221 78 14 chr1 30122357 30122747 -212541606 - Zaphod DNA AcHobo -3231 800 436 2221 98 3 0 chr1 30122747 30123052 -212541301 - AluSp SINE Alu -7 306 1 2732 221 78 14 chr1 30123052 30123377 -212540976 - Zaphod DNA AcHobo -3595 436 39 1042 231 179 46 chr1 30123495 30123846 -212540507 - L2 LINE L2 -779 2535 2138 228 259 24 94 chr1 30123900 30123918 -212540435 + MLT1J2 LTR MaLR 284 302 -148 4133 91 39 5 chr1 30123918 30124479 -212539874 + LTR19B LTR ERV1 1 580 0 228 259 24 94 chr1 30124479 30124630 -212539723 + MLT1J2 LTR MaLR 302 441 -9 1582 181 7 3 chr1 30124920 30125208 -212539145 + AluJo SINE Alu 6 294 -18 1864 164 3 0 chr1 30125208 30125505 -212538848 + AluJb SINE Alu 1 299 -13 1844 230 160 94 chr1 30125505 30125725 -212538628 + L2 LINE L2 1428 1632 -1682 1967 117 7 23 chr1 30125725 30125861 -212538492 + AluSx SINE Alu 1 138 -174 2319 58 7 3 chr1 30125861 30126185 -212538168 + AluSp SINE Alu 1 325 0 1967 117 7 23 chr1 30126185 30126344 -212538009 + AluSx SINE Alu 138 294 -18 1844 230 160 94 chr1 30126344 30126809 -212537544 + L2 LINE L2 1632 2065 -1249 1184 214 173 18 chr1 30126809 30127150 -212537203 + MSTD LTR MaLR 1 394 -2 1844 230 160 94 chr1 30127150 30127507 -212536846 + L2 LINE L2 2065 2540 -774 999 202 34 22 chr1 30127508 30127537 -212536816 + L1MB4 LINE L1 5060 5087 -1059 1926 129 20 3 chr1 30127537 30127839 -212536514 - AluSx SINE Alu -5 307 1 999 202 34 22 chr1 30127839 30128076 -212536277 + L1MB4 LINE L1 5087 5329 -817 886 150 0 26 chr1 30128076 30128229 -212536124 + FRAM SINE Alu 13 161 -15 740 107 0 126 chr1 30128286 30128445 -212535908 + MLT1A1 LTR MaLR 227 365 0 1379 169 79 48 chr1 30128445 30128733 -212535620 + L1MB4 LINE L1 5729 6022 -144 1475 137 0 87 chr1 30128733 30129033 -212535320 - AluJb SINE Alu -17 295 22 1379 169 79 48 chr1 30129033 30129182 -212535171 + L1MB4 LINE L1 6022 6165 -1 214 195 91 13 chr1 30129190 30129267 -212535086 + L2 LINE L2 3083 3165 -148 261 247 0 0 chr1 30129271 30129344 -212535009 + (TA)n Simple_repeat Simple_repeat 1 73 0 527 263 38 15 chr1 30129345 30129478 -212534875 + L2 LINE L2 3137 3272 0 2131 107 13 7 chr1 30129515 30129823 -212534530 + AluSg SINE Alu 1 310 0 1561 278 118 58 chr1 30129841 30130368 -212533985 + L2 LINE L2 2153 2647 -666 850 152 0 8 chr1 30130368 30130500 -212533853 + FLAM_C SINE Alu 1 131 -2 1561 278 118 58 chr1 30130500 30130961 -212533392 + L2 LINE L2 2647 3079 -234 186 43 0 0 chr1 30130961 30130984 -212533369 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1414 142 110 0 chr1 30130988 30131242 -212533111 - AluJo SINE Alu -30 282 1 1570 184 10 0 chr1 30131252 30131545 -212532808 - AluJb SINE Alu -16 296 1 1561 278 118 58 chr1 30131545 30131634 -212532719 + L2 LINE L2 3089 3312 -1 399 173 34 64 chr1 30131645 30131779 -212532574 + AluJ/FLAM SINE Alu 1 69 -233 1823 131 0 4 chr1 30131779 30132053 -212532300 + AluSx SINE Alu 21 293 -19 1964 96 0 76 chr1 30132055 30132369 -212531984 + AluSq SINE Alu 1 290 -23 37 0 0 0 chr1 30132371 30132408 -212531945 + AT_rich Low_complexity Low_complexity 1 37 0 305 261 31 0 chr1 30132712 30132777 -212531576 - MIR SINE MIR -160 102 36 2110 113 3 7 chr1 30132787 30133097 -212531256 - AluSx SINE Alu -3 309 1 1490 164 7 44 chr1 30133135 30133270 -212531083 + AluJb SINE Alu 1 139 -173 2243 94 0 0 chr1 30133270 30133569 -212530784 + AluSg SINE Alu 1 299 -11 1490 164 7 44 chr1 30133569 30133731 -212530622 + AluJb SINE Alu 139 287 -25 882 113 22 108 chr1 30133748 30133829 -212530524 - L1MB5 LINE L1 -9 6165 6079 2145 104 7 0 chr1 30133829 30134127 -212530226 + AluSx SINE Alu 1 300 -12 2157 75 3 53 chr1 30134127 30134445 -212529908 + AluSx SINE Alu 1 303 -9 882 113 22 108 chr1 30134445 30134547 -212529806 - L1MB5 LINE L1 -93 6081 5997 1620 142 0 66 chr1 30134582 30134791 -212529562 - AluJb SINE Alu -26 286 102 2125 84 3 36 chr1 30134791 30135100 -212529253 - AluSx SINE Alu -13 299 1 1620 142 0 66 chr1 30135100 30135192 -212529161 - AluJb SINE Alu -210 102 5 303 333 36 0 chr1 30135225 30135336 -212529017 - MIR SINE MIR -62 146 32 206 213 0 0 chr1 30136486 30136533 -212527820 + (CCCCG)n Simple_repeat Simple_repeat 2 48 0 22 70 0 0 chr1 30136594 30136637 -212527716 + GC_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr1 30137662 30137685 -212526668 + AT_rich Low_complexity Low_complexity 1 23 0 260 279 82 0 chr1 30137713 30137774 -212526579 - MIR SINE MIR -114 94 29 316 234 139 3 chr1 30137838 30137963 -212526390 - MIR SINE MIR -69 139 46 274 137 39 0 chr1 30138247 30138298 -212526055 - L1M4 LINE L1 -1131 5015 4963 2148 105 7 7 chr1 30138359 30138664 -212525689 - AluSg SINE Alu -5 305 1 1618 179 3 3 chr1 30138918 30139209 -212525144 - AluJb SINE Alu -19 293 3 2065 121 0 7 chr1 30139238 30139536 -212524817 + AluSx SINE Alu 1 296 -16 1609 169 3 10 chr1 30139766 30140068 -212524285 - AluJb SINE Alu -12 300 1 387 239 70 94 chr1 30140080 30140281 -212524072 - L1MC4 LINE L1 -17 8025 7830 831 220 34 34 chr1 30140329 30140657 -212523696 - L1ME2 LINE L1 -11 6153 4961 247 226 0 16 chr1 30140655 30140717 -212523636 + L1P LINE L1 4950 5010 -1136 * 2242 103 3 0 chr1 30140732 30141044 -212523309 - AluSp SINE Alu 0 313 1 27 0 0 0 chr1 30141255 30141282 -212523071 + AT_rich Low_complexity Low_complexity 1 27 0 634 206 113 25 chr1 30141376 30141536 -212522817 - AluJo SINE Alu -14 298 125 2233 94 10 7 chr1 30141757 30142064 -212522289 - AluSq SINE Alu -5 308 1 2234 92 0 0 chr1 30142387 30142680 -212521673 - AluSq SINE Alu -20 293 1 1880 152 7 10 chr1 30142706 30143009 -212521344 + AluSx SINE Alu 1 302 -10 2057 111 19 7 chr1 30143482 30143789 -212520564 - AluSx SINE Alu 0 312 2 186 43 0 0 chr1 30144043 30144066 -212520287 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2076 95 20 7 chr1 30144124 30144430 -212519923 + AluSx SINE Alu 1 310 -2 2190 96 0 7 chr1 30144824 30145125 -212519228 + AluSc SINE Alu 1 299 -10 896 258 191 15 chr1 30145497 30146006 -212518347 + L2 LINE L2 2710 3311 -2 328 304 99 19 chr1 30146257 30146418 -212517935 + MIR SINE MIR 77 250 -12 2047 119 0 7 chr1 30146608 30146893 -212517460 + AluSg SINE Alu 11 293 -17 723 264 109 0 chr1 30146905 30147098 -212517255 + MIR SINE MIR 32 245 -17 1920 95 0 115 chr1 30147147 30147485 -212516868 - AluSx SINE Alu -13 299 1 2178 108 3 9 chr1 30147492 30147807 -212516546 - AluSp SINE Alu 0 313 1 1516 170 6 61 chr1 30147992 30148128 -212516225 + AluJo SINE Alu 2 144 -168 2134 109 0 31 chr1 30148128 30148450 -212515903 + AluSx SINE Alu 1 312 0 1516 170 6 61 chr1 30148450 30148625 -212515728 + AluJo SINE Alu 144 296 -16 743 154 24 24 chr1 30148637 30148760 -212515593 + FLAM_A SINE Alu 1 123 -10 2008 94 47 0 chr1 30148768 30149072 -212515281 + AluSg SINE Alu 1 317 0 964 299 116 24 chr1 30149150 30149620 -212514733 - L2 LINE L2 -10 3303 2791 1976 132 0 3 chr1 30150063 30150351 -212514002 + AluJb SINE Alu 1 287 -25 2311 57 17 27 chr1 30151407 30151703 -212512650 + AluSp SINE Alu 3 295 -18 1497 160 149 4 chr1 30151752 30152014 -212512339 - AluJb SINE Alu -8 304 5 2188 120 0 10 chr1 30152156 30152455 -212511898 + AluSx SINE Alu 1 296 -16 191 303 245 5 chr1 30152455 30152663 -212511690 - L2 LINE L2 -584 2730 2473 239 356 87 20 chr1 30152863 30153012 -212511341 + MER91A DNA MER1_type 18 176 -20 1321 98 38 87 chr1 30153140 30153337 -212511016 + L1MA8 LINE L1 5986 6168 -123 2219 105 0 16 chr1 30153337 30153641 -212510712 + AluSg SINE Alu 1 299 -11 1321 98 38 87 chr1 30153641 30153709 -212510644 + L1MA8 LINE L1 6168 6238 -53 1368 188 12 23 chr1 30153722 30153978 -212510375 - AluJb SINE Alu -25 287 35 2005 151 3 3 chr1 30154041 30154339 -212510014 + AluJb SINE Alu 1 298 -14 918 195 24 18 chr1 30154349 30154518 -212509835 + FRAM SINE Alu 1 166 -10 2269 93 0 0 chr1 30154671 30154985 -212509368 - AluSc SINE Alu 0 314 1 292 303 17 4 chr1 30154996 30155174 -212509179 - MIR SINE MIR -13 249 7 423 262 16 0 chr1 30155875 30156001 -212508352 + MIR SINE MIR 122 249 -13 514 294 23 65 chr1 30156122 30156384 -212507969 - L2 LINE L2 -97 3175 2925 355 307 134 36 chr1 30156527 30156915 -212507438 - L2 LINE L2 -557 2757 2332 2163 121 0 19 chr1 30156999 30157312 -212507041 + AluSg SINE Alu 1 307 -3 1586 175 10 21 chr1 30157365 30157656 -212506697 + AluJo SINE Alu 13 300 -12 343 227 27 64 chr1 30157657 30157767 -212506586 - MER5A DNA MER1_type -56 133 28 320 257 30 0 chr1 30157923 30158024 -212506329 - L2 LINE L2 -1297 2017 1914 2168 113 7 16 chr1 30158193 30158502 -212505851 + AluSx SINE Alu 1 306 -6 268 258 71 57 chr1 30158505 30158674 -212505679 + MIR SINE MIR 31 206 -56 2609 56 3 0 chr1 30158679 30158982 -212505371 - AluY SINE Alu -7 304 1 2194 80 0 32 chr1 30159028 30159339 -212505014 - AluY SINE Alu -10 301 1 1865 144 43 0 chr1 30159936 30160214 -212504139 - AluSx SINE Alu -22 290 1 1642 152 82 4 chr1 30161445 30161715 -212502638 + AluJb SINE Alu 1 291 -21 2065 156 10 0 chr1 30162053 30162360 -212501993 - AluJb SINE Alu -2 310 1 1724 139 110 0 chr1 30162360 30162632 -212501721 - AluJo SINE Alu -9 303 1 436 320 41 6 chr1 30163185 30163357 -212500996 + L3 LINE CR1 1293 1470 -107 2406 75 0 53 chr1 30163436 30163756 -212500597 + AluSp SINE Alu 1 303 -10 2600 68 3 0 chr1 30164655 30164964 -212499389 - AluSp SINE Alu -3 310 1 1718 190 3 7 chr1 30166128 30166433 -212497920 - AluJo SINE Alu -8 304 1 1843 120 105 0 chr1 30166873 30167149 -212497204 - AluSx SINE Alu -7 305 1 1924 162 3 7 chr1 30167336 30167639 -212496714 + AluJb SINE Alu 1 302 -10 383 192 0 0 chr1 30167666 30167744 -212496609 - MIR SINE MIR 0 262 185 1168 125 17 23 chr1 30167744 30167920 -212496433 - AluJo/FRAM SINE Alu -2 310 136 2180 118 0 7 chr1 30167922 30168227 -212496126 - AluSx SINE Alu -9 303 1 2440 68 0 3 chr1 30168253 30168549 -212495804 + AluY SINE Alu 1 295 -16 431 200 146 15 chr1 30168722 30168852 -212495501 - MIR3 SINE MIR -46 162 16 1741 158 3 52 chr1 30169048 30169376 -212494977 - AluJb SINE Alu 0 312 1 424 263 98 58 chr1 30169661 30169866 -212494487 + MIR SINE MIR 50 262 0 1806 167 13 16 chr1 30170325 30170631 -212493722 - AluJo SINE Alu -7 305 1 342 205 0 0 chr1 30171376 30171459 -212492894 + T-rich Low_complexity Low_complexity 1 83 0 186 71 0 0 chr1 30171494 30171522 -212492831 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 30171734 30171755 -212492598 + AT_rich Low_complexity Low_complexity 1 21 0 2188 113 0 10 chr1 30172238 30172539 -212491814 + AluSx SINE Alu 1 298 -14 1665 150 59 11 chr1 30173863 30174136 -212490217 - AluJo SINE Alu -26 286 1 331 250 62 0 chr1 30174161 30174257 -212490096 - L2 LINE L2 -25 3288 3187 2148 112 7 10 chr1 30174304 30174600 -212489753 - AluSx SINE Alu -17 295 1 1716 168 21 11 chr1 30174608 30174893 -212489460 - AluJb SINE Alu -24 288 1 23 33 0 0 chr1 30174905 30174935 -212489418 + AT_rich Low_complexity Low_complexity 1 30 0 2223 128 0 0 chr1 30175161 30175473 -212488880 - AluSx SINE Alu 0 312 1 2354 112 0 0 chr1 30175481 30175793 -212488560 - AluSx SINE Alu 0 312 1 1161 79 0 0 chr1 30175899 30176038 -212488315 + AluSg SINE Alu 1 139 -171 1327 187 0 4 chr1 30176162 30176387 -212487966 + LTR47B LTR ERVL 214 437 -6 308 213 16 0 chr1 30176407 30176468 -212487885 - MLT1G1 LTR MaLR -533 62 1 796 189 61 39 chr1 30176501 30176681 -212487672 - MLT1F LTR MaLR -358 184 1 211 114 159 0 chr1 30176923 30176967 -212487386 + MIR SINE MIR 156 206 -56 980 154 0 77 chr1 30176971 30177005 -212487348 - AluJo/FRAM SINE Alu -10 302 267 2350 97 0 0 chr1 30177005 30177303 -212487050 + AluSc SINE Alu 1 298 -11 980 154 0 77 chr1 30177303 30177450 -212486903 - AluJo/FRAM SINE Alu -45 267 135 260 191 16 16 chr1 30177450 30177513 -212486840 + MIR SINE MIR 199 261 -1 3044 178 34 54 chr1 30177781 30177997 -212486356 - L1ME1 LINE L1 -15 6151 5932 2262 104 3 0 chr1 30177997 30178294 -212486059 + AluSp SINE Alu 1 298 -15 3044 178 34 54 chr1 30178294 30178728 -212485625 - L1ME1 LINE L1 -234 5932 5514 1594 148 4 0 chr1 30178829 30179065 -212485288 - AluSx SINE Alu -75 237 1 436 192 10 19 chr1 30179065 30179169 -212485184 - L1ME3A LINE L1 -194 5976 5874 1192 140 5 11 chr1 30179170 30179356 -212484997 - AluJo SINE Alu -1 311 127 374 244 169 12 chr1 30179356 30179528 -212484825 - L1ME3A LINE L1 -275 5889 5691 * 1800 194 37 57 chr1 30179523 30179780 -212484573 + L1ME2 LINE L1 5713 5959 -205 1940 116 3 55 chr1 30179780 30180091 -212484262 + AluSx SINE Alu 3 297 -15 1800 194 37 57 chr1 30180091 30180293 -212484060 + L1ME2 LINE L1 5959 6163 -1 1784 139 0 4 chr1 30180304 30180563 -212483790 + AluJb SINE Alu 1 258 -54 320 141 136 0 chr1 30180619 30180710 -212483643 - L1ME3A LINE L1 -456 5714 5604 337 227 91 0 chr1 30180711 30180799 -212483554 + MIR SINE MIR 56 151 -111 2294 185 59 5 chr1 30180860 30181339 -212483014 + LTR65 LTR ERV1 167 575 0 23 0 0 0 chr1 30181393 30181416 -212482937 + AT_rich Low_complexity Low_complexity 1 23 0 1559 129 0 13 chr1 30181488 30181721 -212482632 - AluJb SINE Alu -82 230 1 2398 71 0 0 chr1 30181946 30182251 -212482102 + AluSx SINE Alu 1 305 0 1569 150 8 0 chr1 30182367 30182621 -212481732 + AluJb SINE Alu 51 306 -6 198 0 0 0 chr1 30182717 30182739 -212481614 + (GGGTG)n Simple_repeat Simple_repeat 1 22 0 244 211 53 0 chr1 30183065 30183122 -212481231 + MIR SINE MIR 105 164 -98 201 147 0 0 chr1 30183640 30183674 -212480679 + (CCCCAG)n Simple_repeat Simple_repeat 4 37 0 891 150 15 0 chr1 30185084 30185217 -212479136 - AluJo SINE Alu -177 135 1 804 178 96 77 chr1 30185238 30185446 -212478907 - AluJo SINE Alu -14 298 87 2026 147 0 0 chr1 30185838 30186130 -212478223 - AluJb SINE Alu -20 292 1 443 285 151 0 chr1 30186748 30186934 -212477419 - MIR SINE MIR -2 260 47 1850 161 0 11 chr1 30186990 30187309 -212477044 + AluJo SINE Alu 1 316 0 202 354 52 10 chr1 30187431 30187527 -212476826 + L2 LINE L2 3136 3235 -37 970 247 129 53 chr1 30187540 30188014 -212476339 - L2 LINE L2 0 3313 2804 2459 88 0 7 chr1 30188163 30188470 -212475883 + AluSg SINE Alu 1 305 -5 2074 116 3 23 chr1 30188967 30189277 -212475076 + AluSx SINE Alu 1 304 -8 1348 193 8 4 chr1 30189344 30189582 -212474771 - AluJo SINE Alu -37 275 37 2303 97 10 0 chr1 30189881 30190190 -212474163 - AluSx SINE Alu 0 312 1 2203 93 3 20 chr1 30190349 30190649 -212473704 - AluSp SINE Alu -18 295 1 2239 82 7 7 chr1 30190754 30191047 -212473306 - AluSx SINE Alu 0 312 20 291 249 171 63 chr1 30191071 30191228 -212473125 + MIR SINE MIR 3 194 -68 1997 137 0 23 chr1 30191228 30191528 -212472825 + AluJb SINE Alu 1 293 -19 291 249 171 63 chr1 30191528 30191606 -212472747 + MIR SINE MIR 194 262 0 2245 119 0 0 chr1 30191607 30191902 -212472451 - AluSx SINE Alu -17 295 1 798 231 122 0 chr1 30191946 30192175 -212472178 + MIR SINE MIR 6 262 0 599 260 83 15 chr1 30192443 30192647 -212471706 - MIR SINE MIR 0 262 45 1721 161 33 20 chr1 30192657 30192956 -212471397 - AluJo SINE Alu -9 303 1 2037 134 7 0 chr1 30193118 30193402 -212470951 + AluSq SINE Alu 5 290 -23 2206 119 3 3 chr1 30193881 30194193 -212470160 - AluSx SINE Alu 0 312 1 2425 84 0 3 chr1 30194455 30194751 -212469602 + AluSp SINE Alu 1 295 -18 1898 179 3 0 chr1 30194771 30195078 -212469275 - AluJo SINE Alu -4 308 1 285 398 0 0 chr1 30196161 30196279 -212468074 - MIR SINE MIR -68 140 23 731 285 116 4 chr1 30196655 30197037 -212467316 + L2 LINE L2 2728 3145 -168 207 0 0 0 chr1 30197210 30197233 -212467120 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 380 187 122 32 chr1 30197251 30197374 -212466979 + MIR SINE MIR 117 250 -12 2409 82 0 0 chr1 30197935 30198229 -212466124 + AluSx SINE Alu 1 294 -18 609 266 44 52 chr1 30199137 30199288 -212465065 + MIR SINE MIR 6 156 -106 2383 84 3 3 chr1 30199288 30199596 -212464757 + AluY SINE Alu 1 308 -3 609 266 44 52 chr1 30199596 30199696 -212464657 + MIR SINE MIR 156 255 -7 1087 134 52 0 chr1 30200558 30200730 -212463623 - MER2 DNA MER2_type 0 345 165 699 119 0 0 chr1 30200730 30200831 -212463522 - LTR12 LTR ERV1 -1 713 613 292 267 11 0 chr1 30200831 30200921 -212463432 - LTR30 LTR ERV1 -79 643 553 1334 131 159 8 chr1 30200922 30201167 -212463186 - LTR12 LTR ERV1 -429 285 4 584 112 142 166 chr1 30201167 30201219 -212463134 - MER2 DNA MER2_type -180 165 113 2382 103 3 0 chr1 30201219 30201530 -212462823 + AluSq SINE Alu 2 313 0 2383 99 0 0 chr1 30201537 30201840 -212462513 + AluSp SINE Alu 1 303 -10 584 112 142 166 chr1 30201840 30201948 -212462405 - MER2 DNA MER2_type -238 107 1 2347 93 0 0 chr1 30202092 30202393 -212461960 + AluY SINE Alu 1 301 -10 1167 97 0 0 chr1 30202393 30202547 -212461806 + AluSc SINE Alu 132 285 -24 260 75 30 30 chr1 30202547 30202614 -212461739 + (TA)n Simple_repeat Simple_repeat 2 68 0 314 194 0 107 chr1 30202617 30202678 -212461675 + L1MC4 LINE L1 6612 6659 -1383 957 145 0 0 chr1 30202678 30202857 -212461496 + (TA)n Simple_repeat Simple_repeat 2 180 0 314 194 0 107 chr1 30202857 30202898 -212461455 + L1MC4 LINE L1 6659 6703 -1339 192 125 0 0 chr1 30202898 30202930 -212461423 + (TA)n Simple_repeat Simple_repeat 2 33 0 455 139 28 0 chr1 30203145 30203217 -212461136 - MLT1A1 LTR MaLR 0 365 292 704 120 0 19 chr1 30203217 30203325 -212461028 - MLT1A1 LTR MaLR -259 106 1 181 203 17 51 chr1 30204279 30204338 -212460015 + MIR SINE MIR 89 145 -117 25 31 0 0 chr1 30204432 30204464 -212459889 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 30204553 30204578 -212459775 + AT_rich Low_complexity Low_complexity 1 25 0 1590 194 3 7 chr1 30204578 30204882 -212459471 - AluJo SINE Alu -7 305 3 1895 159 10 3 chr1 30205286 30205581 -212458772 - AluJo SINE Alu -15 297 1 729 211 87 45 chr1 30205675 30205862 -212458491 - MER112 DNA MER1_type -3 253 52 2254 109 0 7 chr1 30205862 30206164 -212458189 - AluSx SINE Alu -12 300 1 729 211 87 45 chr1 30206164 30206218 -212458135 - MER112 DNA MER1_type -204 52 2 1688 182 0 42 chr1 30206937 30207250 -212457103 - AluJo SINE Alu -12 300 1 2400 80 3 10 chr1 30207262 30207563 -212456790 - AluSp SINE Alu -14 299 1 1698 120 15 135 chr1 30207582 30207915 -212456438 - AluSx SINE Alu -19 293 1 258 354 87 17 chr1 30208033 30208321 -212456032 + L2 LINE L2 2073 2380 -934 297 0 0 0 chr1 30208434 30208467 -212455886 + (CA)n Simple_repeat Simple_repeat 2 34 0 866 243 45 5 chr1 30208477 30208699 -212455654 + MIR SINE MIR 30 260 -2 893 133 17 99 chr1 30208808 30208921 -212455432 + FRAM SINE Alu 1 95 -207 2415 93 0 0 chr1 30208921 30209223 -212455130 + AluSx SINE Alu 1 302 -10 893 133 17 99 chr1 30209223 30209290 -212455063 + FRAM SINE Alu 95 166 0 1227 173 0 31 chr1 30209307 30209532 -212454821 + AluJo SINE Alu 85 302 -10 1790 124 4 4 chr1 30210036 30210302 -212454051 - AluY SINE Alu -7 304 39 1996 126 7 13 chr1 30210312 30210613 -212453740 - AluSq SINE Alu -14 299 1 398 20 20 0 chr1 30211040 30211091 -212453262 + (TG)n Simple_repeat Simple_repeat 2 53 0 1682 189 39 0 chr1 30211091 30211377 -212452976 - AluJb SINE Alu -15 297 1 2157 114 0 16 chr1 30211675 30211990 -212452363 + AluSx SINE Alu 1 310 -2 371 328 36 40 chr1 30213161 30213408 -212450945 + L1MEc LINE L1 564 809 -5310 1114 299 68 25 chr1 30213453 30214193 -212450160 + L1MEc LINE L1 1004 1712 -865 287 160 53 130 chr1 30214198 30214280 -212450073 + L1ME3A LINE L1 5195 5265 -881 2336 101 3 0 chr1 30214280 30214586 -212449767 + AluSg SINE Alu 1 307 -3 287 160 53 130 chr1 30214586 30214634 -212449719 + L1ME3A LINE L1 5265 5315 -831 325 135 0 0 chr1 30214643 30214695 -212449658 - Charlie1 DNA MER1_type -5 2756 2705 2379 75 3 3 chr1 30214702 30214994 -212449359 + AluSp SINE Alu 1 292 -21 1069 129 15 156 chr1 30215030 30215047 -212449306 - Charlie1 DNA MER1_type -45 2716 2698 1823 117 61 109 chr1 30215047 30215088 -212449265 - THE1C LTR MaLR 0 375 334 2237 108 0 3 chr1 30215088 30215393 -212448960 + AluSg SINE Alu 1 304 -6 1823 117 61 109 chr1 30215393 30215745 -212448608 - THE1C LTR MaLR -41 334 1 1069 129 15 156 chr1 30215745 30216061 -212448292 - Charlie1 DNA MER1_type -63 2698 2430 1014 223 5 0 chr1 30216061 30216285 -212448068 - L1M1 LINE L1 -4411 3154 2930 3991 163 87 61 chr1 30216286 30217236 -212447117 - Charlie1 DNA MER1_type -311 2450 1526 1808 148 74 44 chr1 30217236 30217600 -212446753 - THE1C LTR MaLR 0 375 1 3991 163 87 61 chr1 30217600 30217621 -212446732 - Charlie1 DNA MER1_type -1235 1526 1507 2136 101 17 10 chr1 30217621 30217919 -212446434 - L1MA2 LINE L1 0 6304 6005 3991 163 87 61 chr1 30217919 30217988 -212446365 - Charlie1 DNA MER1_type -1254 1507 82 1909 234 61 79 chr1 30217991 30218701 -212445652 + L1ME3A LINE L1 5368 6064 -106 2120 97 3 24 chr1 30218863 30219206 -212445147 - AluSx SINE Alu 0 337 1 2275 101 3 3 chr1 30219612 30219919 -212444434 + AluSg SINE Alu 1 307 -3 2305 84 14 10 chr1 30220019 30220316 -212444037 - AluSg SINE Alu -12 298 1 26 50 0 0 chr1 30220505 30220545 -212443808 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr1 30220902 30220923 -212443430 + AT_rich Low_complexity Low_complexity 1 21 0 247 284 49 37 chr1 30221367 30221448 -212442905 + L2 LINE L2 3133 3214 -58 1990 96 46 0 chr1 30221600 30221882 -212442471 + AluSq SINE Alu 5 299 -14 830 152 0 8 chr1 30221882 30222007 -212442346 + FLAM_C SINE Alu 2 125 -8 884 123 8 8 chr1 30222065 30222195 -212442158 - FLAM_C SINE Alu -13 130 1 2335 88 7 0 chr1 30222993 30223298 -212441055 - AluSp SINE Alu -5 308 2 2034 154 0 0 chr1 30223736 30224034 -212440319 - AluSx SINE Alu -14 298 1 290 259 59 35 chr1 30224164 30224249 -212440104 + MER5B DNA MER1_type 1 87 -91 265 232 0 14 chr1 30224261 30224330 -212440023 - MER116 DNA Mariner -12 68 1 502 143 0 51 chr1 30224330 30224428 -212439925 + MER5B DNA MER1_type 86 178 0 1554 135 0 0 chr1 30224450 30224680 -212439673 - AluSg/x SINE Alu -3 309 80 1730 167 14 0 chr1 30224808 30225089 -212439264 + AluJo SINE Alu 1 285 -27 2158 83 42 3 chr1 30225125 30225413 -212438940 + AluSx SINE Alu 1 299 -13 815 181 67 138 chr1 30225415 30225786 -212438567 - MER2 DNA MER2_type 0 345 1 571 121 11 33 chr1 30226346 30226437 -212437916 - MER21-int LTR ERV1 -1548 2643 2555 2155 130 0 13 chr1 30226452 30226589 -212437764 + AluSx SINE Alu 1 138 -174 2098 112 10 10 chr1 30226589 30226884 -212437469 + AluSq SINE Alu 1 295 -18 2155 130 0 13 chr1 30226884 30227061 -212437292 + AluSx SINE Alu 138 311 -1 499 104 0 0 chr1 30227083 30227150 -212437203 + Alu SINE Alu 2 68 -243 298 109 22 0 chr1 30227150 30227196 -212437157 + GA-rich Low_complexity Low_complexity 2 48 0 2292 104 7 0 chr1 30227196 30227503 -212436850 + AluSg SINE Alu 1 309 -1 615 141 23 40 chr1 30227512 30227689 -212436664 + GA-rich Low_complexity Low_complexity 2 175 0 1698 189 47 21 chr1 30227690 30228028 -212436325 - MER21-int LTR ERV1 -1663 2528 2182 1227 209 17 8 chr1 30228019 30228258 -212436095 - MER21-int LTR ERV1 -2178 2013 1773 * 643 234 48 0 chr1 30228528 30228652 -212435701 + FLAM_A SINE Alu 12 141 -1 2195 103 3 7 chr1 30228659 30228959 -212435394 + AluY SINE Alu 1 299 -12 2289 78 10 0 chr1 30229192 30229485 -212434868 - AluSp SINE Alu -17 296 1 536 207 41 135 chr1 30229506 30229552 -212434801 - L1MC4 LINE L1 0 8042 7993 1953 158 24 7 chr1 30229552 30229849 -212434504 + AluJo SINE Alu 1 302 -10 536 207 41 135 chr1 30229849 30230068 -212434285 - L1MC4 LINE L1 -49 7993 7802 2304 41 4 2 chr1 30230854 30231164 -212433189 - L1P LINE L1 -789 5367 5058 5308 19 16 0 chr1 30231164 30231737 -212432616 + L1PA3 LINE L1 5569 6155 0 349 210 175 28 chr1 30231862 30232166 -212432187 + L1ME4a LINE L1 5744 6117 -4 2196 124 0 9 chr1 30232293 30232608 -212431745 + AluSx SINE Alu 1 312 0 231 193 88 0 chr1 30233008 30233065 -212431288 - LTR29 LTR ERV1 -292 330 269 207 0 0 0 chr1 30233714 30233737 -212430616 + (TTG)n Simple_repeat Simple_repeat 2 24 0 751 147 0 101 chr1 30234492 30234621 -212429732 + FLAM_C SINE Alu 1 116 -17 27 29 0 0 chr1 30234622 30234656 -212429697 + AT_rich Low_complexity Low_complexity 1 34 0 601 132 11 0 chr1 30235096 30235187 -212429166 + U6 snRNA snRNA 1 92 -15 2111 122 0 22 chr1 30235231 30235542 -212428811 - AluSx SINE Alu -8 304 1 546 194 54 47 chr1 30235603 30235732 -212428621 - MER5B DNA MER1_type -48 130 1 219 256 45 128 chr1 30235732 30235817 -212428536 + MIR3 SINE MIR 26 99 -109 2209 117 0 7 chr1 30235817 30236116 -212428237 + AluSg SINE Alu 1 297 -13 219 256 45 128 chr1 30236116 30236146 -212428207 + MIR3 SINE MIR 99 130 -78 2468 75 3 0 chr1 30236263 30236568 -212427785 - AluY SINE Alu -1 310 5 2218 113 13 3 chr1 30236652 30236961 -212427392 + AluSx SINE Alu 1 312 0 378 0 0 0 chr1 30237086 30237128 -212427225 + (TG)n Simple_repeat Simple_repeat 2 43 0 1836 108 0 98 chr1 30237406 30237542 -212426811 + AluSx SINE Alu 1 92 -220 2122 117 0 36 chr1 30237542 30237849 -212426504 + AluSq SINE Alu 1 296 -17 1836 108 0 98 chr1 30237849 30238017 -212426336 + AluSx SINE Alu 92 275 -37 1620 140 113 0 chr1 30238023 30238280 -212426073 + AluSx SINE Alu 1 286 -26 377 290 142 16 chr1 30239456 30239639 -212424714 + MIR SINE MIR 8 213 -49 5747 29 26 6 chr1 30239684 30240334 -212424019 + SVA Other Other 724 1386 0 2524 80 0 6 chr1 30240753 30241067 -212423286 - AluSx SINE Alu 0 312 1 376 295 124 0 chr1 30242150 30242279 -212422074 + L2 LINE L2 3121 3265 -7 516 301 68 0 chr1 30243845 30243991 -212420362 - L2 LINE L2 0 3272 3117 2058 122 0 10 chr1 30245291 30245586 -212418767 + AluSx SINE Alu 1 292 -20 794 239 53 25 chr1 30246280 30246523 -212417830 + MIR SINE MIR 3 252 -10 2498 67 3 13 chr1 30246963 30247276 -212417077 - AluY SINE Alu -1 310 1 729 118 0 0 chr1 30247314 30247416 -212416937 + AluSq/x SINE Alu 7 108 -204 2387 66 17 0 chr1 30247708 30247996 -212416357 + AluY SINE Alu 1 293 -18 2287 74 17 14 chr1 30248053 30248350 -212416003 + AluY SINE Alu 1 298 -13 2139 140 0 16 chr1 30248353 30248488 -212415865 + AluSg SINE Alu 1 137 -173 2426 90 0 3 chr1 30248488 30248789 -212415564 + AluSg SINE Alu 1 300 -10 2139 140 0 16 chr1 30248789 30248961 -212415392 + AluSg SINE Alu 137 303 -7 25 0 0 0 chr1 30249231 30249256 -212415097 + AT_rich Low_complexity Low_complexity 1 25 0 985 181 35 0 chr1 30249632 30249803 -212414550 + FRAM SINE Alu 1 168 -8 2172 138 0 0 chr1 30249804 30250109 -212414244 + AluSx SINE Alu 1 305 -7 1648 193 7 7 chr1 30250335 30250635 -212413718 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr1 30251420 30251441 -212412912 + AT_rich Low_complexity Low_complexity 1 21 0 539 257 0 0 chr1 30252137 30252250 -212412103 - MER3 DNA MER1_type -96 113 1 2466 91 0 3 chr1 30252617 30252925 -212411428 + AluSp SINE Alu 1 307 -6 1983 123 60 11 chr1 30253935 30254220 -212410133 + AluSx SINE Alu 3 301 -11 1882 171 7 0 chr1 30254229 30254516 -212409837 + AluSx SINE Alu 1 289 -23 1989 176 0 0 chr1 30254549 30254861 -212409492 - AluJb SINE Alu 0 312 1 2360 93 13 7 chr1 30254875 30255185 -212409168 - AluSx SINE Alu 0 312 1 2480 45 0 72 chr1 30255258 30255591 -212408762 - AluY SINE Alu -2 309 1 914 132 16 0 chr1 30255591 30255720 -212408633 - AluSq/x SINE Alu -182 131 1 1975 157 7 0 chr1 30255724 30256023 -212408330 - AluSx SINE Alu -11 301 1 634 133 0 0 chr1 30256070 30256160 -212408193 - AluSg/x SINE Alu -14 295 206 3002 146 10 47 chr1 30256160 30256286 -212408067 + Tigger1 DNA MER2_type 1684 1813 -605 1779 139 0 16 chr1 30256286 30256544 -212407809 - AluSx SINE Alu -22 290 37 3002 146 10 47 chr1 30256544 30256969 -212407384 + Tigger1 DNA MER2_type 1813 2216 -202 2404 89 7 0 chr1 30256969 30257272 -212407081 - AluSq SINE Alu -8 305 1 3002 146 10 47 chr1 30257272 30257295 -212407058 + Tigger1 DNA MER2_type 2216 2238 -180 712 222 0 0 chr1 30257384 30257510 -212406843 - AluJb SINE Alu -185 127 2 1124 159 0 0 chr1 30257707 30257870 -212406483 - AluSg/x SINE Alu -21 289 127 2106 115 6 37 chr1 30257874 30258196 -212406157 - AluSx SINE Alu 0 312 1 664 116 0 0 chr1 30258278 30258364 -212405989 + AluJ/FLAM SINE Alu 6 91 -221 350 264 65 88 chr1 30258382 30258544 -212405809 + L1ME4a LINE L1 5497 5652 -469 2105 125 7 0 chr1 30258544 30258840 -212405513 - AluSq SINE Alu -15 298 1 350 264 65 88 chr1 30258840 30259009 -212405344 + L1ME4a LINE L1 5652 5823 -298 2157 121 10 3 chr1 30259050 30259348 -212405005 + AluSq SINE Alu 1 300 -13 735 181 15 23 chr1 30259359 30259492 -212404861 + FLAM_A SINE Alu 2 133 0 2275 94 3 3 chr1 30259506 30259794 -212404559 + AluSp SINE Alu 13 300 -13 391 344 5 48 chr1 30259801 30259990 -212404363 + L1ME4a LINE L1 5860 6040 -81 283 323 52 0 chr1 30260069 30260165 -212404188 + L2 LINE L2 3168 3268 -4 1683 130 50 76 chr1 30260262 30260563 -212403790 - AluSx SINE Alu -19 293 1 360 354 59 31 chr1 30260608 30260862 -212403491 - L1ME4a LINE L1 -70 6051 5791 2231 97 10 0 chr1 30260901 30261191 -212403162 - AluSx SINE Alu -8 304 12 2022 70 0 0 chr1 30261297 30261538 -212402815 - AluY SINE Alu -70 241 1 24 0 0 0 chr1 30261548 30261572 -212402781 + AT_rich Low_complexity Low_complexity 1 24 0 388 277 32 0 chr1 30261600 30261694 -212402659 - L2 LINE L2 -3 3310 3214 1943 133 14 4 chr1 30261699 30262010 -212402343 + AluSx SINE Alu 1 314 0 2146 98 11 11 chr1 30262018 30262305 -212402048 + AluSg1 SINE Alu 1 287 -22 249 297 314 16 chr1 30262929 30263114 -212401239 - MIR SINE MIR 0 262 23 2022 108 56 11 chr1 30263457 30263744 -212400609 - AluSq SINE Alu -13 300 1 1627 168 28 31 chr1 30263747 30264033 -212400320 - AluJo SINE Alu -21 291 7 2130 123 0 7 chr1 30264116 30264409 -212399944 - AluSx SINE Alu -21 291 1 2023 99 51 20 chr1 30265047 30265340 -212399013 + AluSx SINE Alu 1 302 -10 337 216 281 36 chr1 30265351 30265490 -212398863 + MIR SINE MIR 90 262 0 225 259 288 63 chr1 30265734 30265939 -212398414 + MIR SINE MIR 2 252 -10 769 202 24 30 chr1 30266321 30266489 -212397864 + FRAM SINE Alu 1 163 -13 2162 128 13 0 chr1 30266545 30266851 -212397502 + AluSx SINE Alu 1 310 -2 829 168 0 0 chr1 30266857 30266988 -212397365 + FLAM_C SINE Alu 3 133 0 191 303 91 0 chr1 30267287 30267353 -212397000 + MIR SINE MIR 55 126 -82 2414 83 0 7 chr1 30267422 30267724 -212396629 + AluY SINE Alu 1 300 -11 1353 194 27 34 chr1 30267873 30268166 -212396187 + AluJb SINE Alu 1 291 -21 403 285 112 23 chr1 30268190 30268404 -212395949 - MIR SINE MIR -10 252 20 231 335 116 18 chr1 30268401 30268565 -212395788 - MIR SINE MIR -55 207 28 * 842 144 0 23 chr1 30268568 30268700 -212395653 - AluSg/x SINE Alu -19 291 163 919 109 0 29 chr1 30269054 30269191 -212395162 + FLAM_C SINE Alu 1 133 0 239 317 54 58 chr1 30270455 30270660 -212393693 - L3 LINE CR1 -198 1379 1176 278 283 18 44 chr1 30270750 30270774 -212393579 - L2 LINE L2 0 3272 3249 1566 172 20 17 chr1 30270774 30271076 -212393277 + AluJo SINE Alu 4 306 -6 278 283 18 44 chr1 30271076 30271164 -212393189 - L2 LINE L2 -23 3249 3163 2293 89 0 3 chr1 30271184 30271477 -212392876 - AluSp SINE Alu -3 310 19 422 306 50 19 chr1 30272026 30272186 -212392167 + MIR SINE MIR 32 196 -66 216 220 20 0 chr1 30272436 30272486 -212391867 + L2 LINE L2 3000 3050 -263 184 250 0 25 chr1 30272942 30272982 -212391371 + MIR SINE MIR 34 72 -136 238 186 0 0 chr1 30273268 30273311 -212391042 + MIR SINE MIR 15 57 -205 2135 130 3 10 chr1 30273317 30273618 -212390735 - AluJb SINE Alu -13 299 1 784 203 0 0 chr1 30273648 30273776 -212390577 + AluJo SINE Alu 7 134 -178 2001 153 7 0 chr1 30273784 30274071 -212390282 + AluJb SINE Alu 2 290 -22 732 147 37 0 chr1 30274072 30274181 -212390172 - AluJo/FLAM SINE Alu -198 114 2 2396 107 0 0 chr1 30274250 30274560 -212389793 - AluSx SINE Alu 0 312 3 709 144 0 0 chr1 30274587 30274691 -212389662 - AluJb SINE Alu -15 297 194 2537 75 0 0 chr1 30274847 30275153 -212389200 + AluY SINE Alu 1 306 -5 305 119 0 0 chr1 30275191 30275233 -212389120 + MIR SINE MIR 2 43 -219 2625 61 0 3 chr1 30275518 30275828 -212388525 - AluY SINE Alu -2 309 1 529 284 153 33 chr1 30276435 30276650 -212387703 + MIR SINE MIR 2 242 -20 570 127 0 0 chr1 30276884 30276963 -212387390 + AluSc SINE Alu 2 80 -229 2482 87 0 0 chr1 30276963 30277261 -212387092 + AluSx SINE Alu 1 298 -14 1700 113 0 0 chr1 30277261 30277481 -212386872 + AluSc SINE Alu 71 292 -17 2269 79 7 10 chr1 30277859 30278150 -212386203 + AluY SINE Alu 1 290 -21 417 306 71 24 chr1 30278163 30278333 -212386020 + L3 LINE CR1 1323 1500 -77 712 196 146 5 chr1 30278596 30278795 -212385558 - L1ME1 LINE L1 -4 6162 5936 2503 69 3 0 chr1 30278828 30279131 -212385222 + AluSp SINE Alu 1 304 -9 1621 118 32 20 chr1 30279227 30279473 -212384880 - AluSx SINE Alu -9 303 55 3827 81 33 0 chr1 30281869 30282391 -212381962 + SVA Other Other 2 540 -846 2198 70 14 3 chr1 30282724 30283009 -212381344 - AluY SINE Alu -23 288 1 531 288 38 38 chr1 30283616 30283800 -212380553 + MIR SINE MIR 2 185 -77 1816 131 46 0 chr1 30284064 30284144 -212380209 + AluSg SINE Alu 1 76 -234 2372 90 27 0 chr1 30284144 30284445 -212379908 + AluSq SINE Alu 1 309 -4 1816 131 46 0 chr1 30284445 30284647 -212379706 + AluSg SINE Alu 76 296 -14 576 39 0 0 chr1 30284725 30284802 -212379551 - AluSc SINE Alu -1 308 232 427 232 10 38 chr1 30284904 30285190 -212379163 + GA-rich Low_complexity Low_complexity 1 278 0 271 412 0 21 chr1 30285193 30285290 -212379063 + polypurine Low_complexity Low_complexity 3 97 0 5579 59 2 74 chr1 30285290 30286084 -212378269 + SVA Other Other 650 1386 0 409 245 140 7 chr1 30286209 30286352 -212378001 - MIR SINE MIR -71 191 30 1031 103 0 0 chr1 30286393 30286529 -212377824 - AluSq/x SINE Alu -177 136 1 2451 98 0 0 chr1 30286643 30286948 -212377405 - AluSg SINE Alu 0 310 6 2406 90 3 3 chr1 30287042 30287352 -212377001 - AluSx SINE Alu -2 310 1 324 238 62 0 chr1 30287880 30287960 -212376393 - MIR3 SINE MIR -15 193 109 225 0 0 0 chr1 30288317 30288342 -212376011 + (A)n Simple_repeat Simple_repeat 1 25 0 1664 109 124 11 chr1 30288618 30288884 -212375469 + AluSg SINE Alu 1 296 -14 325 307 86 18 chr1 30289279 30289442 -212374911 - MIR SINE MIR -41 221 48 318 264 171 45 chr1 30289766 30290035 -212374318 + L2 LINE L2 1568 1870 -1444 1023 179 27 0 chr1 30290283 30290506 -212373847 + MER90 LTR ERV1 1 229 -346 757 169 59 156 chr1 30290544 30290676 -212373677 + MLT1B LTR MaLR 54 197 -193 2373 97 3 6 chr1 30290676 30290987 -212373366 + AluSg SINE Alu 1 310 0 757 169 59 156 chr1 30290987 30291227 -212373126 + MLT1B LTR MaLR 197 390 0 * 1320 197 46 46 chr1 30291227 30291387 -212372966 + MER90 LTR ERV1 263 422 -192 2091 144 7 0 chr1 30291387 30291685 -212372668 - AluSx SINE Alu -12 300 1 1320 197 46 46 chr1 30291685 30291876 -212372477 + MER90 LTR ERV1 421 614 0 577 185 11 112 chr1 30292007 30292185 -212372168 + L2 LINE L2 3154 3313 0 257 320 62 8 chr1 30292191 30292319 -212372034 - L2 LINE L2 -172 3100 2966 1080 73 7 7 chr1 30292320 30292456 -212371897 + AluSq/x SINE Alu 1 136 -176 232 343 120 13 chr1 30292469 30292702 -212371651 - L2 LINE L2 -339 2975 2718 987 122 14 0 chr1 30292730 30292869 -212371484 + AluJo SINE Alu 1 141 -171 219 88 0 0 chr1 30292886 30292920 -212371433 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1243 174 184 58 chr1 30294551 30294854 -212369499 + MSTC LTR MaLR 1 363 -65 2455 93 0 0 chr1 30294854 30295155 -212369198 - AluSq SINE Alu -12 301 1 1243 174 184 58 chr1 30295155 30295231 -212369122 + MSTC LTR MaLR 363 428 0 372 279 44 44 chr1 30295516 30295652 -212368701 + MIR SINE MIR 57 192 -70 2298 108 3 0 chr1 30295727 30296024 -212368329 + AluSp SINE Alu 1 298 -15 236 100 0 0 chr1 30296165 30296205 -212368148 - L1MB2 LINE L1 -7 6164 6125 2199 113 7 0 chr1 30296205 30296498 -212367855 + AluSx SINE Alu 1 295 -17 243 132 26 0 chr1 30296526 30296564 -212367789 - MER4E LTR ERV1 -75 691 653 2515 59 3 3 chr1 30296570 30296873 -212367480 - AluY SINE Alu -8 303 1 1717 169 3 29 chr1 30296873 30297042 -212367311 - L1MB2 LINE L1 -44 6127 5970 2301 118 0 0 chr1 30297042 30297346 -212367007 - AluSx SINE Alu -8 304 1 1717 169 3 29 chr1 30297346 30297525 -212366828 - L1MB2 LINE L1 -201 5970 5788 1477 141 76 65 chr1 30297525 30297674 -212366679 + AluJb SINE Alu 1 156 -156 2626 59 0 3 chr1 30297674 30297981 -212366372 + AluY SINE Alu 1 306 -5 1477 141 76 65 chr1 30297981 30298094 -212366259 + AluJb SINE Alu 156 266 -46 3092 101 15 19 chr1 30298102 30298577 -212365776 - LTR15 LTR ERV1 -11 482 10 2420 96 3 0 chr1 30298591 30298894 -212365459 + AluSp SINE Alu 6 309 -4 2383 80 3 10 chr1 30299000 30299301 -212365052 + AluSx SINE Alu 1 299 -13 246 234 0 0 chr1 30299446 30299510 -212364843 + AluJo SINE Alu 73 136 -166 529 216 0 9 chr1 30300851 30300962 -212363391 - MIR SINE MIR -132 130 21 203 224 92 26 chr1 30301072 30301148 -212363205 + MIR SINE MIR 36 116 -92 566 121 9 60 chr1 30301150 30301266 -212363087 + FRAM SINE Alu 62 171 -5 1407 152 42 115 chr1 30301522 30301701 -212362652 - AluJo SINE Alu -6 306 160 258 32 0 0 chr1 30301701 30301732 -212362621 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1407 152 42 115 chr1 30301732 30301882 -212362471 - AluJo SINE Alu -152 160 1 2263 115 3 0 chr1 30301884 30302179 -212362174 - AluSp SINE Alu -15 298 3 1079 98 0 0 chr1 30302184 30302317 -212362036 - AluSq/x SINE Alu -179 133 1 733 139 0 0 chr1 30302317 30302439 -212361914 - FLAM_C SINE Alu -1 142 21 2373 88 13 10 chr1 30302461 30302769 -212361584 - AluSq SINE Alu -4 309 1 426 277 8 8 chr1 30302772 30302891 -212361462 - MIR SINE MIR -113 149 31 559 146 0 0 chr1 30303029 30303118 -212361235 + AluJ/FLAM SINE Alu 11 99 -213 1865 169 0 10 chr1 30303540 30303841 -212360512 + AluJb SINE Alu 4 301 -11 840 157 16 32 chr1 30303909 30304083 -212360270 - MER69A DNA AcHobo -8 169 1 2906 7 0 0 chr1 30304216 30304521 -212359832 - AluYb8 SINE Alu -13 305 1 1182 151 11 113 chr1 30304576 30304629 -212359724 - MER8 DNA MER2_type -1 238 181 2234 104 0 7 chr1 30304629 30304944 -212359409 - AluSx SINE Alu 0 313 1 2249 129 0 3 chr1 30304953 30305264 -212359089 - AluSg SINE Alu 0 310 1 1182 151 11 113 chr1 30305264 30305463 -212358890 - MER8 DNA MER2_type -66 173 1 1950 146 17 10 chr1 30305678 30305980 -212358373 + AluSx SINE Alu 1 304 -8 2162 132 0 23 chr1 30305983 30306287 -212358066 + AluSx SINE Alu 1 297 -15 995 171 5 0 chr1 30306740 30306927 -212357426 - L1MB3 LINE L1 -2 6181 5994 881 137 103 7 chr1 30306947 30307137 -212357216 - AluJb SINE Alu 0 328 125 2646 157 38 2 chr1 30307137 30307641 -212356712 - L1MB3 LINE L1 -211 5972 5451 1880 156 0 20 chr1 30307673 30307968 -212356385 + AluJb SINE Alu 13 301 -11 845 227 6 0 chr1 30308303 30308475 -212355878 - FAM SINE Alu -2 173 1 1341 82 12 0 chr1 30308484 30308654 -212355699 - AluY SINE Alu -12 299 128 481 151 16 54 chr1 30308659 30308844 -212355509 + GA-rich Low_complexity Low_complexity 2 179 0 226 336 116 30 chr1 30309833 30310065 -212354288 - L2 LINE L2 -3 3269 3018 2467 90 0 6 chr1 30310139 30310451 -212353902 - AluY SINE Alu -1 310 1 443 257 119 43 chr1 30310475 30310685 -212353668 + MIR SINE MIR 5 230 -32 1860 106 110 0 chr1 30310702 30310966 -212353387 + AluSx SINE Alu 11 303 -9 839 129 0 50 chr1 30311169 30311309 -212353044 - FLAM_C SINE Alu -10 133 1 1499 230 57 42 chr1 30311413 30311866 -212352487 - L1MC4 LINE L1 -121 7921 7462 2145 94 42 3 chr1 30313023 30313310 -212351043 - AluSq SINE Alu -15 298 1 1586 140 79 19 chr1 30313346 30313611 -212350742 + AluJo SINE Alu 2 282 -30 2140 114 3 7 chr1 30313615 30313904 -212350449 - AluSx SINE Alu -24 288 1 29 0 0 0 chr1 30313904 30313933 -212350420 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 30313955 30313984 -212350369 + AT_rich Low_complexity Low_complexity 1 29 0 2417 77 0 7 chr1 30313993 30314290 -212350063 + AluY SINE Alu 1 295 -16 2352 91 0 44 chr1 30314370 30314689 -212349664 + AluSq SINE Alu 1 305 -8 409 316 64 14 chr1 30315987 30316190 -212348163 - MIR SINE MIR -53 209 3 231 350 157 5 chr1 30316190 30316538 -212347815 + L2 LINE L2 2574 2977 -337 521 346 97 5 chr1 30316904 30317121 -212347232 - MIR SINE MIR -24 238 2 189 287 226 0 chr1 30317574 30317689 -212346664 + MIR SINE MIR 48 188 -74 305 294 59 0 chr1 30318553 30318655 -212345698 - MIR3 SINE MIR -9 199 92 180 234 0 43 chr1 30319502 30319549 -212344804 - MIR SINE MIR 0 262 218 671 277 58 29 chr1 30319646 30319888 -212344465 + MIR SINE MIR 14 262 0 2503 82 0 13 chr1 30371570 30371886 -212292467 - AluSx SINE Alu 0 312 1 2175 98 7 0 chr1 30375157 30375442 -212288911 - AluSx SINE Alu -7 305 19 2221 96 0 0 chr1 30376175 30376476 -212287877 + AluSc SINE Alu 1 301 0 2637 52 0 0 chr1 30377033 30377341 -212287012 - AluY SINE Alu -3 308 1 22 35 0 0 chr1 30377469 30377498 -212286855 + AT_rich Low_complexity Low_complexity 1 29 0 288 0 0 0 chr1 30378100 30378132 -212286221 + (TG)n Simple_repeat Simple_repeat 2 33 0 1935 134 13 36 chr1 30378157 30378464 -212285889 + AluSx SINE Alu 1 300 -12 40 0 0 0 chr1 30378729 30378769 -212285584 + AT_rich Low_complexity Low_complexity 1 40 0 1988 145 30 0 chr1 30378791 30379088 -212285265 - AluSx SINE Alu -6 306 1 180 0 0 0 chr1 30379800 30379820 -212284533 + (TC)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 30379820 30379841 -212284512 + AT_rich Low_complexity Low_complexity 1 21 0 262 91 23 0 chr1 30379842 30379886 -212284467 + AluSc SINE Alu 251 295 -4 403 288 25 66 chr1 30380043 30380091 -212284262 - MIR SINE MIR -6 256 208 939 149 0 8 chr1 30380091 30380225 -212284128 - FLAM_A SINE Alu 0 133 1 403 288 25 66 chr1 30380225 30380374 -212283979 - MIR SINE MIR -54 208 67 344 164 0 6 chr1 30380403 30380467 -212283886 + L1MB4 LINE L1 6063 6123 -51 935 196 131 16 chr1 30380467 30380712 -212283641 - MER44D DNA MER2_type 0 605 461 1470 155 19 4 chr1 30380712 30380970 -212283383 - AluSg SINE Alu -12 298 37 602 309 67 51 chr1 30382383 30382607 -212281746 - L3 LINE CR1 -21 1556 1324 2269 123 0 0 chr1 30382607 30382916 -212281437 - AluSx SINE Alu -3 309 1 602 309 67 51 chr1 30382916 30383005 -212281348 - L3 LINE CR1 -253 1324 1238 725 147 9 0 chr1 30383175 30383284 -212281069 + AluSg/x SINE Alu 188 297 -15 25 0 0 0 chr1 30383284 30383309 -212281044 + AT_rich Low_complexity Low_complexity 1 25 0 2540 57 3 0 chr1 30383310 30383606 -212280747 + AluY SINE Alu 1 297 -14 2000 153 3 3 chr1 30383614 30383915 -212280438 + AluJo SINE Alu 3 303 -9 251 337 42 11 chr1 30383915 30384010 -212280343 - L3 LINE CR1 -481 1096 999 834 167 0 8 chr1 30384155 30384287 -212280066 + FRAM SINE Alu 20 150 -26 206 274 48 0 chr1 30384367 30384429 -212279924 - MIR SINE MIR -40 222 158 690 149 0 0 chr1 30384704 30384838 -212279515 + (TC)n Simple_repeat Simple_repeat 2 135 0 740 175 0 0 chr1 30386054 30386168 -212278185 - AluJb SINE Alu -197 115 2 627 285 81 71 chr1 30386610 30386766 -212277587 - L1ME LINE L1 -344 5818 5665 1119 184 85 33 chr1 30386766 30386978 -212277375 - MER58A DNA MER1_type -1 223 1 627 285 81 71 chr1 30386978 30387355 -212276998 - L1ME LINE L1 -497 5665 5293 2181 110 7 0 chr1 30387355 30387647 -212276706 - AluSx SINE Alu -17 295 2 627 285 81 71 chr1 30387647 30387730 -212276623 - L1ME LINE L1 -869 5293 5212 1585 138 21 50 chr1 30387730 30388013 -212276340 - AluJb SINE Alu -24 288 14 627 285 81 71 chr1 30388013 30388306 -212276047 - L1ME LINE L1 -950 5212 4903 340 162 135 14 chr1 30388307 30388381 -212275972 + L2 LINE L2 3198 3280 -33 939 195 82 170 chr1 30388393 30388781 -212275572 + L2 LINE L2 1633 1953 -1361 1430 182 45 52 chr1 30388781 30389072 -212275281 - AluJb SINE Alu -23 289 1 939 195 82 170 chr1 30389072 30389277 -212275076 + L2 LINE L2 1953 2174 -1140 2140 128 0 0 chr1 30389277 30389575 -212274778 - AluSx SINE Alu -14 298 1 307 293 71 0 chr1 30389593 30389692 -212274661 - MIR SINE MIR -63 145 40 431 211 0 11 chr1 30389778 30389868 -212274485 + AluS SINE Alu 2 90 -223 2163 114 0 3 chr1 30390456 30390755 -212273598 - AluSg SINE Alu -12 298 1 1330 198 19 164 chr1 30390755 30391059 -212273294 - L1ME LINE L1 -2120 4026 3679 2291 111 0 0 chr1 30391059 30391356 -212272997 - AluSx SINE Alu -15 297 1 1330 198 19 164 chr1 30391356 30391440 -212272913 - L1ME LINE L1 -2467 3679 3584 1741 173 0 13 chr1 30391440 30391747 -212272606 - AluJb SINE Alu -9 303 1 1330 198 19 164 chr1 30391747 30392003 -212272350 - L1ME LINE L1 -2562 3584 3475 1815 133 97 13 chr1 30392663 30392972 -212271381 - MER7A DNA MER2_type -12 334 2 2222 87 0 22 chr1 30393074 30393395 -212270958 + AluSc SINE Alu 1 282 -27 1876 139 26 23 chr1 30393403 30393712 -212270641 + AluSx SINE Alu 1 310 -2 3847 133 19 18 chr1 30393927 30394220 -212270133 + L1MB2 LINE L1 5537 5828 -343 2270 98 7 0 chr1 30394220 30394506 -212269847 + AluSc SINE Alu 3 290 -19 3847 133 19 18 chr1 30394506 30394842 -212269511 + L1MB2 LINE L1 5828 6167 -4 2014 128 10 7 chr1 30395254 30395552 -212268801 + AluSx SINE Alu 2 300 -12 1900 241 108 6 chr1 30395670 30396171 -212268182 - MLT1H1 LTR MaLR -3 552 1 1397 182 6 88 chr1 30397819 30398149 -212266204 + AluJo SINE Alu 1 303 -9 260 179 0 46 chr1 30398153 30398218 -212266135 - L2 LINE L2 -79 3234 3133 2184 113 0 0 chr1 30398493 30398804 -212265549 - AluSq SINE Alu 0 311 1 1195 246 135 25 chr1 30398804 30399380 -212264973 + L2 LINE L2 2660 3308 -5 1838 136 97 13 chr1 30399525 30399834 -212264519 - MER7A DNA MER2_type -12 334 2 2236 83 0 24 chr1 30399936 30400266 -212264087 + AluSc SINE Alu 1 323 0 2101 110 36 32 chr1 30400393 30400702 -212263651 - AluSx SINE Alu -2 310 1 4513 166 78 71 chr1 30400702 30400788 -212263565 + L1MB4 LINE L1 4216 4300 -1880 2312 95 10 0 chr1 30400788 30401094 -212263259 - AluSg SINE Alu -1 309 1 4513 166 78 71 chr1 30401094 30401851 -212262502 + L1MB4 LINE L1 4300 5050 -1130 189 74 0 0 chr1 30401851 30401878 -212262475 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4513 166 78 71 chr1 30401878 30402139 -212262214 + L1MB4 LINE L1 5050 5308 -872 1945 89 0 0 chr1 30402139 30402374 -212261979 + AluSx SINE Alu 16 250 -62 4513 144 22 18 chr1 30402374 30402832 -212261521 + L1MB4 LINE L1 5413 5877 -303 2018 106 44 0 chr1 30402832 30403135 -212261218 + AluSg SINE Alu 1 310 0 4513 144 22 18 chr1 30403135 30403441 -212260912 + L1MB4 LINE L1 5877 6180 0 4513 166 78 71 chr1 30403441 30403471 -212260882 + L1MB4 LINE L1 5307 6180 0 1673 127 94 22 chr1 30403857 30404133 -212260220 - AluJo SINE Alu -16 296 1 316 191 61 116 chr1 30404702 30404849 -212259504 + L1MC5 LINE L1 7199 7337 -624 1105 119 17 28 chr1 30404850 30405027 -212259326 - MER20 DNA MER1_type -1 218 44 611 245 13 63 chr1 30405050 30405287 -212259066 + L1MC5 LINE L1 7344 7568 -393 595 228 157 62 chr1 30405392 30405730 -212258623 + L1MC5 LINE L1 7556 7925 -36 2269 123 0 0 chr1 30407243 30407545 -212256808 + AluSx SINE Alu 1 302 -10 1725 164 26 29 chr1 30407597 30407908 -212256445 + AluJo SINE Alu 1 310 -2 2137 132 0 0 chr1 30407908 30408203 -212256150 + AluSx SINE Alu 1 295 -17 424 226 39 0 chr1 30408232 30408334 -212256019 + L1MA10 LINE L1 6229 6334 0 893 84 0 0 chr1 30408897 30409016 -212255337 + AluY SINE Alu 188 306 -5 241 261 0 15 chr1 30409637 30409702 -212254651 + L2 LINE L2 3250 3313 0 2202 112 3 19 chr1 30409708 30410020 -212254333 + AluSx SINE Alu 1 307 -5 558 206 0 53 chr1 30410227 30410358 -212253995 - L2 LINE L2 -5 3308 3185 2148 138 3 3 chr1 30411376 30411688 -212252665 + AluSx SINE Alu 1 312 0 205 218 18 36 chr1 30412174 30412229 -212252124 - MIR SINE MIR -117 145 92 2206 108 6 19 chr1 30412344 30412660 -212251693 + AluSx SINE Alu 1 312 0 1970 108 30 20 chr1 30413168 30413464 -212250889 - AluSq SINE Alu -14 299 1 422 219 53 86 chr1 30413846 30413997 -212250356 - L2 LINE L2 0 3313 3168 359 24 0 0 chr1 30414130 30414171 -212250182 + (TG)n Simple_repeat Simple_repeat 1 41 0 663 301 150 31 chr1 30414563 30415011 -212249342 + L2 LINE L2 2805 3305 -8 2198 116 0 3 chr1 30415057 30415359 -212248994 - AluSx SINE Alu -11 301 1 286 226 86 32 chr1 30415505 30415598 -212248755 - L2 LINE L2 0 3313 3216 2413 73 0 0 chr1 30415615 30415902 -212248451 - AluY SINE Alu -24 287 1 5621 150 63 40 chr1 30415909 30416179 -212248174 + L1MC3 LINE L1 6460 6722 -1063 1450 125 0 10 chr1 30416179 30416387 -212247966 - AluJb SINE Alu -22 290 85 5621 150 63 40 chr1 30416387 30417225 -212247128 + L1MC3 LINE L1 6722 7594 -191 1062 147 54 5 chr1 30417225 30417409 -212246944 + L1MC2 LINE L1 6137 6329 -15 2220 128 0 0 chr1 30417409 30417721 -212246632 + AluSx SINE Alu 1 312 0 25 0 0 0 chr1 30417726 30417751 -212246602 + AT_rich Low_complexity Low_complexity 1 25 0 2496 80 0 0 chr1 30417820 30418121 -212246232 + AluY SINE Alu 1 301 -10 24 32 0 0 chr1 30418784 30418815 -212245538 + AT_rich Low_complexity Low_complexity 1 31 0 222 253 287 11 chr1 30419083 30419170 -212245183 + MIR SINE MIR 16 126 -82 2263 110 0 0 chr1 30419363 30419663 -212244690 + AluSx SINE Alu 1 300 -12 865 106 8 0 chr1 30419792 30419915 -212244438 + AluSg/x SINE Alu 163 286 -26 25 0 0 0 chr1 30419915 30419940 -212244413 + AT_rich Low_complexity Low_complexity 1 25 0 603 289 122 10 chr1 30420678 30420875 -212243478 + MIR SINE MIR 31 249 -13 2321 88 7 10 chr1 30421005 30421313 -212243040 - AluSp SINE Alu -6 307 1 1852 164 7 10 chr1 30421588 30421887 -212242466 + AluJb SINE Alu 1 298 -14 249 236 28 14 chr1 30421985 30422057 -212242296 + GA-rich Low_complexity Low_complexity 5 77 0 331 267 8 15 chr1 30423673 30423804 -212240549 - L1ME4a LINE L1 -2 6119 5990 773 194 0 22 chr1 30423837 30423971 -212240382 - FLAM_C SINE Alu -2 131 1 180 0 0 0 chr1 30424029 30424049 -212240304 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1074 202 47 0 chr1 30424073 30424266 -212240087 - AluJo SINE Alu -102 210 9 1475 94 0 0 chr1 30424529 30424710 -212239643 - AluSx SINE Alu -131 181 1 222 227 213 0 chr1 30425129 30425204 -212239149 - MIR SINE MIR -119 143 53 2317 107 3 0 chr1 30425261 30425570 -212238783 + AluSg SINE Alu 1 310 0 2345 68 10 0 chr1 30426374 30426670 -212237683 + AluSp SINE Alu 1 299 -14 246 247 154 14 chr1 30426760 30426856 -212237497 - MIR SINE MIR -97 111 2 531 222 37 30 chr1 30427432 30427567 -212236786 - MER91B DNA MER1_type 0 190 55 218 320 60 0 chr1 30427687 30427787 -212236566 + MIR3 SINE MIR 93 198 -10 1680 176 0 35 chr1 30428449 30428762 -212235591 + AluJb SINE Alu 1 302 -10 1139 164 82 5 chr1 30429274 30429481 -212234872 + AluJb SINE Alu 84 306 -6 1505 191 0 53 chr1 30429545 30429699 -212234654 - AluJo SINE Alu -25 287 155 2020 123 31 0 chr1 30429699 30429991 -212234362 - AluSx SINE Alu -11 301 1 1505 191 0 53 chr1 30429991 30430139 -212234214 - AluJo SINE Alu -157 155 1 2248 93 7 0 chr1 30430360 30430649 -212233704 - AluSx SINE Alu -21 291 1 2169 109 0 0 chr1 30430669 30430954 -212233399 - AluY SINE Alu -26 285 1 2480 171 44 17 chr1 30430954 30431434 -212232919 - L1MB2 LINE L1 -43 6128 5636 597 185 0 0 chr1 30431471 30431563 -212232790 - FLAM_A SINE Alu -46 96 5 491 185 0 0 chr1 30431567 30431648 -212232705 - L1MB2 LINE L1 -604 5567 5487 1284 83 0 0 chr1 30431657 30431813 -212232540 - AluY SINE Alu -30 281 126 1457 176 24 41 chr1 30431827 30432122 -212232231 - AluJo SINE Alu -22 290 1 266 294 192 7 chr1 30432282 30432428 -212231925 + MIR SINE MIR 68 240 -22 21 0 0 0 chr1 30432689 30432710 -212231643 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr1 30433839 30433866 -212230487 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 2279 111 0 0 chr1 30434459 30434756 -212229597 - AluSg1 SINE Alu -11 298 2 203 258 152 0 chr1 30434952 30435018 -212229335 - MER5C DNA MER1_type -248 76 1 2246 133 8 51 chr1 30436108 30436460 -212227893 - MER1B DNA MER1_type 0 337 1 403 326 41 51 chr1 30436575 30436771 -212227582 + MIR3 SINE MIR 6 199 -9 22 0 0 0 chr1 30437481 30437503 -212226850 + AT_rich Low_complexity Low_complexity 1 22 0 1150 204 170 1 chr1 30437952 30438317 -212226036 + MLT1F1 LTR MaLR 1 426 -116 1652 134 53 4 chr1 30438322 30438568 -212225785 + AluSx SINE Alu 1 258 -54 1470 189 37 37 chr1 30438590 30438886 -212225467 + AluJo SINE Alu 1 296 -16 313 94 31 62 chr1 30438890 30438954 -212225399 + L1MB3 LINE L1 6109 6170 -13 1790 166 0 35 chr1 30439028 30439347 -212225006 + AluJb SINE Alu 1 308 -4 1243 190 23 31 chr1 30439360 30439618 -212224735 + AluSx SINE Alu 1 256 -56 185 65 32 0 chr1 30439661 30439692 -212224661 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 535 212 4 91 chr1 30439706 30439782 -212224571 + MLT1F LTR MaLR 426 507 -147 2241 115 0 0 chr1 30439782 30440078 -212224275 - AluSx SINE Alu -16 296 1 535 212 4 91 chr1 30440078 30440139 -212224214 + MLT1F LTR MaLR 507 654 0 734 198 0 0 chr1 30440810 30440926 -212223427 - FLAM_C SINE Alu -16 117 2 423 239 154 34 chr1 30441794 30441911 -212222442 - MIR3 SINE MIR -41 167 37 715 204 13 25 chr1 30442030 30442187 -212222166 + MER5A DNA MER1_type 35 189 0 241 353 86 9 chr1 30442218 30442334 -212222019 + L2 LINE L2 3143 3267 -5 536 129 12 0 chr1 30442498 30442583 -212221770 + AluJ/FLAM SINE Alu 1 86 -226 2192 110 3 10 chr1 30443095 30443396 -212220957 - AluSq SINE Alu -14 299 1 1855 159 21 0 chr1 30443805 30444088 -212220265 - AluJb SINE Alu -23 289 1 2182 141 6 0 chr1 30445369 30445682 -212218671 - 7SLRNA srpRNA srpRNA -5 315 1 745 283 92 0 chr1 30445745 30446028 -212218325 - L1ME4a LINE L1 -234 5887 5579 499 210 142 45 chr1 30446365 30446541 -212217812 + MIR SINE MIR 17 209 -53 1727 99 8 36 chr1 30447124 30447404 -212216949 - AluSx SINE Alu 0 312 54 1022 123 19 0 chr1 30447410 30447564 -212216789 + AluSx SINE Alu 1 157 -155 23 86 0 0 chr1 30448286 30448344 -212216009 + AT_rich Low_complexity Low_complexity 1 58 0 2262 102 0 0 chr1 30449317 30449611 -212214742 - AluSx SINE Alu -18 294 1 255 325 193 28 chr1 30450440 30450864 -212213489 - L2 LINE L2 -338 2976 2483 21 36 0 0 chr1 30451236 30451264 -212213089 + AT_rich Low_complexity Low_complexity 1 28 0 243 167 0 37 chr1 30451447 30451501 -212212852 - L1MC4a LINE L1 -1871 5937 5886 2152 102 26 13 chr1 30451657 30451961 -212212392 + AluSq SINE Alu 1 308 -5 24 77 0 0 chr1 30452229 30452281 -212212072 + AT_rich Low_complexity Low_complexity 1 52 0 978 282 249 47 chr1 30453636 30454576 -212209777 - L2 LINE L2 -691 2623 1494 2232 125 0 0 chr1 30454578 30454891 -212209462 + AluSq SINE Alu 1 313 0 1397 103 0 0 chr1 30454891 30455076 -212209277 + AluSg/x SINE Alu 123 307 -3 212 0 36 0 chr1 30455157 30455185 -212209168 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 723 176 0 0 chr1 30455185 30455304 -212209049 - FLAM_C SINE Alu -22 121 3 611 253 43 43 chr1 30455473 30455659 -212208694 + MER5A DNA MER1_type 2 187 -2 2439 79 0 0 chr1 30456345 30456637 -212207716 - AluSg SINE Alu -16 294 3 270 26 0 0 chr1 30456766 30456804 -212207549 - L1MA7 LINE L1 -29 6262 6225 449 186 0 0 chr1 30456844 30456930 -212207423 - L1MA7 LINE L1 -140 6151 6066 2102 129 0 0 chr1 30457052 30457368 -212206985 + AluSx SINE Alu 1 316 0 871 257 60 16 chr1 30457705 30457954 -212206399 + MIR SINE MIR 2 261 -1 2004 141 7 0 chr1 30458269 30458567 -212205786 - AluJb SINE Alu -12 300 1 230 346 47 9 chr1 30458758 30458865 -212205488 + MER5A DNA MER1_type 1 122 -67 2168 142 72 2 chr1 30459371 30459773 -212204580 + L1MB3 LINE L1 5753 6182 -1 903 307 123 22 chr1 30459774 30460311 -212204042 - L2 LINE L2 -1685 1629 1039 1517 166 60 33 chr1 30460327 30460629 -212203724 - AluJo SINE Alu -2 310 1 1376 126 20 0 chr1 30460640 30460838 -212203515 - AluSg/x SINE Alu -19 293 92 263 360 54 11 chr1 30460843 30461029 -212203324 - L2 LINE L2 -2301 1013 820 2520 59 0 3 chr1 30461129 30461434 -212202919 - AluY SINE Alu -6 305 2 288 348 11 0 chr1 30461581 30461670 -212202683 + L2 LINE L2 3181 3270 -2 353 296 74 17 chr1 30462920 30463096 -212201257 + L1M4 LINE L1 5008 5193 -953 673 225 0 52 chr1 30463098 30463271 -212201082 + L1MC3 LINE L1 6163 6326 -1459 1935 135 0 30 chr1 30463672 30463998 -212200355 - AluSx SINE Alu 0 317 1 185 0 40 0 chr1 30464170 30464195 -212200158 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2919 189 53 42 chr1 30464670 30464902 -212199451 + L1M4 LINE L1 4182 4410 -1736 2085 118 4 0 chr1 30464902 30465207 -212199146 + AluSx SINE Alu 1 306 0 2919 189 53 42 chr1 30465207 30465500 -212198853 + L1M4 LINE L1 4410 4698 -1448 2052 120 23 7 chr1 30465500 30465800 -212198553 - AluSx SINE Alu -7 305 1 2919 189 53 42 chr1 30465800 30466127 -212198226 + L1M4 LINE L1 4698 5046 -1100 2069 100 0 0 chr1 30466158 30466427 -212197926 + AluSg1 SINE Alu 1 269 -40 1471 186 4 0 chr1 30466427 30466680 -212197673 + AluJo SINE Alu 59 312 0 534 210 7 14 chr1 30466690 30466828 -212197525 + L1MB7 LINE L1 6048 6184 0 249 242 65 0 chr1 30467038 30467100 -212197253 + MIR SINE MIR 108 173 -89 229 350 0 38 chr1 30468029 30468109 -212196244 + L3 LINE CR1 88 164 -1413 1360 152 44 12 chr1 30468114 30468364 -212195989 + AluJb SINE Alu 43 300 -12 363 357 21 14 chr1 30468425 30468565 -212195788 + L3 LINE CR1 208 348 -1229 2298 104 0 13 chr1 30468958 30469266 -212195087 - AluSx SINE Alu -8 304 1 336 151 0 0 chr1 30469557 30469610 -212194743 + MER74B LTR ERVL 1 53 -569 1120 237 42 48 chr1 30469646 30470001 -212194352 + MER74B LTR ERVL 211 563 -59 25 31 0 0 chr1 30470627 30470659 -212193694 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr1 30471002 30471045 -212193308 + AT_rich Low_complexity Low_complexity 1 43 0 2159 98 7 0 chr1 30473211 30473496 -212190857 - AluSx SINE Alu -7 305 19 2207 96 0 0 chr1 30474229 30474530 -212189823 + AluSc SINE Alu 1 301 0 2606 49 0 0 chr1 30475087 30475392 -212188961 - AluY SINE Alu -4 307 3 22 35 0 0 chr1 30475522 30475551 -212188802 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr1 30476153 30476189 -212188164 + (TG)n Simple_repeat Simple_repeat 2 37 0 1989 127 10 36 chr1 30476214 30476521 -212187832 + AluSx SINE Alu 1 299 -13 40 0 0 0 chr1 30476786 30476826 -212187527 + AT_rich Low_complexity Low_complexity 1 40 0 1958 146 30 0 chr1 30476848 30477143 -212187210 - AluSx SINE Alu -8 304 1 180 0 0 0 chr1 30477855 30477875 -212186478 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 183 42 0 0 chr1 30477874 30477898 -212186455 + (TA)n Simple_repeat Simple_repeat 1 24 0 227 114 23 0 chr1 30477899 30477943 -212186410 + Alu SINE Alu 251 295 -4 426 288 25 66 chr1 30478100 30478148 -212186205 - MIR SINE MIR -6 256 208 877 149 0 8 chr1 30478148 30478282 -212186071 - FLAM_A SINE Alu 0 133 1 426 288 25 66 chr1 30478282 30478431 -212185922 - MIR SINE MIR -54 208 67 568 121 26 43 chr1 30478468 30478524 -212185829 + L1MB4 LINE L1 6067 6122 -58 3115 176 66 43 chr1 30478524 30478769 -212185584 - MER44D DNA MER2_type -1882 605 367 2200 91 35 0 chr1 30478769 30479056 -212185297 - AluSc SINE Alu -12 297 1 3115 176 66 43 chr1 30479056 30479218 -212185135 - MER44D DNA MER2_type -2120 367 210 2263 89 7 20 chr1 30479218 30479521 -212184832 + AluSg SINE Alu 1 299 -11 3115 176 66 43 chr1 30479521 30479827 -212184526 - MER44D DNA MER2_type -2277 210 3 568 121 26 43 chr1 30479827 30479886 -212184467 + L1MB4 LINE L1 6122 6180 0 22 0 0 0 chr1 30480048 30480070 -212184283 + AT_rich Low_complexity Low_complexity 1 22 0 206 333 120 0 chr1 30481380 30481497 -212182856 - MIR3 SINE MIR -43 165 35 2171 71 18 11 chr1 30481567 30481848 -212182505 + AluSq SINE Alu 17 299 -14 23 0 0 0 chr1 30481957 30481980 -212182373 + AT_rich Low_complexity Low_complexity 1 23 0 1941 138 9 31 chr1 30482282 30482601 -212181752 - AluSx SINE Alu 0 312 1 1692 118 12 4 chr1 30482658 30482903 -212181450 - AluSx SINE Alu -65 247 1 399 150 230 26 chr1 30482945 30483058 -212181295 + FAM SINE Alu 40 175 0 190 186 0 34 chr1 30483083 30483142 -212181211 + GA-rich Low_complexity Low_complexity 3 59 0 1246 205 198 36 chr1 30483222 30483636 -212180717 + MLT1D LTR MaLR 25 505 0 2023 126 3 7 chr1 30483772 30484073 -212180280 + AluSx SINE Alu 1 300 -12 2161 121 0 3 chr1 30484429 30484727 -212179626 - AluSx SINE Alu -15 297 1 560 181 0 0 chr1 30485760 30485865 -212178488 + L1MD3 LINE L1 7731 7835 -160 2783 170 77 66 chr1 30485995 30486607 -212177746 + L1ME1 LINE L1 5438 6042 -124 459 0 0 0 chr1 30486607 30486658 -212177695 + (TA)n Simple_repeat Simple_repeat 1 51 0 2296 110 0 13 chr1 30486658 30486831 -212177522 - AluSx SINE Alu -6 306 137 1987 150 0 7 chr1 30486831 30487131 -212177222 - AluSx SINE Alu -14 298 1 2296 110 0 13 chr1 30487131 30487267 -212177086 - AluSx SINE Alu -175 137 1 2783 170 77 66 chr1 30487267 30487365 -212176988 + L1ME1 LINE L1 6041 6157 -9 481 230 40 0 chr1 30487881 30487981 -212176372 + MLT1B LTR MaLR 287 390 0 269 130 0 0 chr1 30487995 30488041 -212176312 - L1M4b LINE L1 -5298 1248 1203 405 157 0 0 chr1 30488041 30488111 -212176242 - FAM SINE Alu -5 180 111 4578 219 30 36 chr1 30488148 30489254 -212175099 - L1M4b LINE L1 -5337 1205 107 1884 106 85 14 chr1 30489960 30490243 -212174110 + AluSx SINE Alu 1 303 -9 727 123 98 25 chr1 30490459 30490581 -212173772 - FLAM_C SINE Alu 0 133 3 305 326 98 53 chr1 30490879 30491124 -212173229 - HAL1 LINE L1 -1236 1271 1016 226 291 159 33 chr1 30492477 30492628 -212171725 - LTR67 LTR ERVL -32 525 356 992 100 0 14 chr1 30492836 30492849 -212171504 - L1PA10 LINE L1 -9 6159 6147 198 0 0 0 chr1 30492849 30492871 -212171482 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 992 100 0 14 chr1 30492871 30492997 -212171356 - L1PA10 LINE L1 -21 6147 6022 517 304 45 95 chr1 30493363 30493764 -212170589 + L2 LINE L2 2871 3251 -21 204 97 0 0 chr1 30493767 30493798 -212170555 + (TTG)n Simple_repeat Simple_repeat 2 32 0 345 237 35 24 chr1 30493829 30493928 -212170425 + MIR SINE MIR 68 167 -41 186 264 207 16 chr1 30493958 30494079 -212170274 + L2 LINE L2 1917 2060 -1254 427 295 146 48 chr1 30494094 30494389 -212169964 + L2 LINE L2 2432 2755 -559 248 240 13 80 chr1 30494456 30494531 -212169822 - MIR SINE MIR -99 163 94 215 242 70 94 chr1 30494635 30494763 -212169590 + L2 LINE L2 2921 3045 -268 399 250 65 18 chr1 30495206 30495374 -212168979 + HERVL LTR ERVL 4669 4844 -810 298 304 35 35 chr1 30495498 30495613 -212168740 + HERVL LTR ERVL 5038 5152 -502 1809 189 27 32 chr1 30496092 30496319 -212168034 - LTR53 LTR ERVL -145 374 148 8908 28 15 2 chr1 30496319 30498143 -212166210 - L1PA4 LINE L1 -6 6149 4299 1809 189 27 32 chr1 30498143 30498291 -212166062 - LTR53 LTR ERVL -371 148 1 2115 142 10 0 chr1 30498448 30498750 -212165603 + AluJo SINE Alu 1 305 -7 209 33 33 0 chr1 30499136 30499166 -212165187 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 1141 224 123 41 chr1 30499166 30499292 -212165061 + L2 LINE L2 2539 2653 -660 2455 100 0 0 chr1 30499292 30499602 -212164751 - AluSx SINE Alu -2 310 1 1141 224 123 41 chr1 30499602 30499838 -212164515 + L2 LINE L2 2653 2868 -445 2298 125 0 0 chr1 30499838 30500149 -212164204 - AluSx SINE Alu -1 311 1 1141 224 123 41 chr1 30500149 30500488 -212163865 + L2 LINE L2 2868 3313 0 307 265 15 0 chr1 30500494 30500562 -212163791 - MIR SINE MIR -93 115 47 415 295 55 49 chr1 30500715 30500898 -212163455 + MIR SINE MIR 3 186 -76 974 264 62 52 chr1 30500905 30501159 -212163194 + L1M4 LINE L1 4156 4406 -1740 2079 105 3 69 chr1 30501159 30501493 -212162860 - AluSx SINE Alu 0 312 1 974 264 62 52 chr1 30501493 30501851 -212162502 + L1M4 LINE L1 4406 4774 -1372 1233 161 0 18 chr1 30501851 30502068 -212162285 + AluSx SINE Alu 2 214 -98 2335 90 7 0 chr1 30502169 30502459 -212161894 - AluSp SINE Alu -21 292 1 621 256 54 6 chr1 30502459 30502627 -212161726 - MIR SINE MIR -59 203 28 1767 172 0 46 chr1 30502630 30502956 -212161397 - AluJb SINE Alu -1 311 1 24 0 0 0 chr1 30502958 30502982 -212161371 + AT_rich Low_complexity Low_complexity 1 24 0 252 0 0 0 chr1 30503120 30503148 -212161205 + (TC)n Simple_repeat Simple_repeat 2 29 0 842 182 0 0 chr1 30503150 30503282 -212161071 - FLAM_C SINE Alu 0 133 2 213 196 0 0 chr1 30503678 30503724 -212160629 + GA-rich Low_complexity Low_complexity 5 50 0 398 267 0 0 chr1 30503783 30503873 -212160480 - MIR SINE MIR -123 139 50 383 285 28 62 chr1 30504064 30504243 -212160110 - L1M4 LINE L1 -1326 4820 4648 2234 91 10 14 chr1 30504465 30504761 -212159592 + AluSp SINE Alu 1 295 -18 1180 167 0 0 chr1 30504769 30504943 -212159410 + AluJb SINE Alu 1 174 -138 27 29 0 0 chr1 30507176 30507210 -212157143 + AT_rich Low_complexity Low_complexity 1 34 0 331 300 120 11 chr1 30507239 30507522 -212156831 - L1MC/D LINE L1 -2204 5581 5268 658 252 63 90 chr1 30507561 30507590 -212156763 - L1M4 LINE L1 -947 5199 5171 1912 119 48 14 chr1 30507590 30507884 -212156469 - AluSq SINE Alu -9 304 1 1899 161 0 0 chr1 30507886 30508178 -212156175 - AluJo SINE Alu -20 292 1 1335 189 124 0 chr1 30508179 30508444 -212155909 - AluJo SINE Alu -3 299 2 658 252 63 90 chr1 30508444 30508559 -212155794 - L1M4 LINE L1 -976 5170 5053 1497 165 90 0 chr1 30508559 30508825 -212155528 + AluJo SINE Alu 1 290 -22 658 252 63 90 chr1 30508825 30509059 -212155294 - L1M4 LINE L1 -1093 5053 4357 251 120 0 20 chr1 30509192 30509242 -212155111 + (CCCCCT)n Simple_repeat Simple_repeat 2 50 0 280 232 120 56 chr1 30509889 30510031 -212154322 - MIR SINE MIR -12 250 100 524 267 82 30 chr1 30510388 30510620 -212153733 + MIR SINE MIR 18 261 -1 2448 109 0 0 chr1 30510818 30511130 -212153223 - AluSx SINE Alu 0 312 1 1908 138 74 0 chr1 30511410 30511693 -212152660 + AluJb SINE Alu 1 304 -8 2305 109 0 0 chr1 30511696 30511999 -212152354 + AluY SINE Alu 1 303 -8 215 339 54 39 chr1 30512273 30512403 -212151950 + MIR SINE MIR 107 238 -24 233 250 0 69 chr1 30512785 30512857 -212151496 + MIR SINE MIR 26 92 -170 1062 161 5 36 chr1 30512993 30513185 -212151168 + AluJo SINE Alu 2 187 -125 1575 96 0 0 chr1 30513197 30513396 -212150957 + AluSg/x SINE Alu 112 310 -2 225 295 26 13 chr1 30513555 30513633 -212150720 + MIR SINE MIR 65 143 -119 940 167 61 10 chr1 30513667 30513865 -212150488 - MER3 DNA MER1_type 0 209 2 392 225 41 80 chr1 30514034 30514185 -212150168 + MIR3 SINE MIR 44 187 -34 225 193 47 15 chr1 30514361 30514430 -212149923 + L2 LINE L2 2901 2977 -298 2436 74 0 3 chr1 30514448 30514744 -212149609 - AluSp SINE Alu -18 295 1 598 210 8 17 chr1 30514746 30514865 -212149488 - AluJo/FLAM SINE Alu -184 128 11 418 253 238 21 chr1 30514875 30515156 -212149197 + L2 LINE L2 2972 3313 0 227 253 0 58 chr1 30515139 30515226 -212149127 + MIR SINE MIR 172 253 -9 * 554 246 8 8 chr1 30515253 30515371 -212148982 + MER5B DNA MER1_type 60 177 -1 435 287 143 19 chr1 30515393 30515602 -212148751 - MIR SINE MIR 0 262 28 1864 132 45 7 chr1 30515606 30515893 -212148460 - AluJo SINE Alu -9 303 6 258 212 35 124 chr1 30516395 30516508 -212147845 - MIR3 SINE MIR -93 115 13 230 299 109 22 chr1 30517120 30517304 -212147049 - L2 LINE L2 -552 2762 2563 630 218 0 0 chr1 30517315 30517425 -212146928 + FRAM SINE Alu 1 109 -67 2345 105 3 0 chr1 30517433 30517738 -212146615 + AluSp SINE Alu 1 306 -7 349 123 41 0 chr1 30517738 30517811 -212146542 + GA-rich Low_complexity Low_complexity 1 76 0 308 273 68 0 chr1 30518419 30518507 -212145846 - MIR SINE MIR -67 195 102 23 54 0 0 chr1 30518648 30518685 -212145668 + AT_rich Low_complexity Low_complexity 1 37 0 613 218 16 8 chr1 30518895 30519019 -212145334 - L2 LINE L2 0 3313 3189 2618 44 0 0 chr1 30519120 30519417 -212144936 + AluY SINE Alu 2 298 -13 2268 92 14 3 chr1 30519626 30519918 -212144435 - AluSp SINE Alu -18 295 1 909 109 0 36 chr1 30519950 30520087 -212144266 + FLAM_C SINE Alu 2 133 0 536 339 63 5 chr1 30520090 30520311 -212144042 + MIR SINE MIR 26 259 -3 429 222 105 46 chr1 30520382 30520535 -212143818 + MIR SINE MIR 101 262 0 282 204 161 65 chr1 30521136 30521229 -212143124 - MIR SINE MIR -70 138 37 432 229 106 70 chr1 30521880 30522107 -212142246 + MIR SINE MIR 22 256 -6 281 281 34 32 chr1 30522671 30522874 -212141479 + MIR SINE MIR 13 262 0 1994 134 17 7 chr1 30523299 30523591 -212140762 + AluJb SINE Alu 1 295 -17 378 184 0 0 chr1 30524292 30524368 -212139985 + (CA)n Simple_repeat Simple_repeat 2 77 0 316 160 120 0 chr1 30524439 30524514 -212139839 + L1MC/D LINE L1 5734 5817 -1991 2309 93 3 0 chr1 30524522 30524811 -212139542 + AluSg SINE Alu 1 290 -20 958 146 7 7 chr1 30524821 30524972 -212139381 + AluJo SINE Alu 1 151 -161 1575 149 0 16 chr1 30524972 30525221 -212139132 + AluJb SINE Alu 60 304 -8 1792 173 6 13 chr1 30525246 30525559 -212138794 + AluJb SINE Alu 1 311 -1 2159 91 0 0 chr1 30525697 30525972 -212138381 - AluY SINE Alu -36 275 1 264 234 0 16 chr1 30526301 30526365 -212137988 + Charlie8 DNA MER1_type 117 179 -2238 250 128 0 0 chr1 30526430 30526469 -212137884 + Charlie8 DNA MER1_type 2368 2406 -11 2229 114 7 7 chr1 30526525 30526833 -212137520 + AluSx SINE Alu 1 308 -4 220 264 0 0 chr1 30527153 30527206 -212137147 + L2 LINE L2 2836 2888 -425 921 216 0 0 chr1 30527208 30527384 -212136969 - FRAM SINE Alu -5 171 1 2173 99 38 0 chr1 30527404 30527696 -212136657 + AluSp SINE Alu 1 303 -10 426 197 0 0 chr1 30527709 30527785 -212136568 + AluJ/FLAM SINE Alu 1 76 -236 622 112 0 60 chr1 30527785 30527901 -212136452 - Tigger1 DNA MER2_type -1681 737 629 570 127 0 0 chr1 30527953 30528032 -212136321 - AluJ/FLAM SINE Alu -232 80 2 1825 119 28 0 chr1 30528033 30528319 -212136034 - Tigger1 DNA MER2_type -1601 817 524 2653 58 0 3 chr1 30528319 30528629 -212135724 - AluSc SINE Alu 0 309 1 203 265 20 0 chr1 30528639 30528688 -212135665 + MER5B DNA MER1_type 127 176 -2 2220 123 13 0 chr1 30528692 30529000 -212135353 - AluSx SINE Alu 0 312 1 230 330 38 18 chr1 30529286 30529461 -212134892 + MIR3 SINE MIR 34 211 -48 1336 159 183 0 chr1 30529547 30529667 -212134686 - AluJb SINE Alu -5 297 200 216 0 0 0 chr1 30529667 30529691 -212134662 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1336 159 183 0 chr1 30529691 30529821 -212134532 - AluJb SINE Alu -102 200 1 235 244 8 102 chr1 30529922 30530049 -212134304 + LTR67 LTR ERVL 429 543 -14 21 0 0 0 chr1 30530051 30530072 -212134281 + AT_rich Low_complexity Low_complexity 1 21 0 745 152 67 96 chr1 30530361 30530477 -212133876 - MER5A DNA MER1_type 0 189 78 2386 84 3 0 chr1 30530477 30530775 -212133578 - AluSg SINE Alu -11 299 1 745 152 67 96 chr1 30530775 30530836 -212133517 - MER5A DNA MER1_type -111 78 17 2273 120 0 0 chr1 30531086 30531385 -212132968 - AluSx SINE Alu -13 299 1 609 194 47 16 chr1 30531755 30531884 -212132469 - FLAM_A SINE Alu 0 133 1 243 288 106 38 chr1 30532244 30532376 -212131977 + MIR3 SINE MIR 30 170 -38 2347 107 7 0 chr1 30532440 30532738 -212131615 - AluSx SINE Alu -12 300 1 188 311 78 48 chr1 30532817 30532920 -212131433 + L2 LINE L2 3034 3139 -174 275 241 0 17 chr1 30533814 30533872 -212130481 + MIR3 SINE MIR 113 169 -39 2457 72 3 3 chr1 30535489 30535795 -212128558 + AluSx SINE Alu 1 306 -6 611 172 45 30 chr1 30535796 30535930 -212128423 + MER4D LTR ERV1 768 903 0 2351 92 6 19 chr1 30535997 30536314 -212128039 + AluSp SINE Alu 1 313 0 1440 74 6 0 chr1 30536314 30536490 -212127863 + AluSp SINE Alu 134 310 -3 195 214 24 24 chr1 30536549 30536591 -212127762 - L2 LINE L2 -75 3238 3197 2052 114 37 0 chr1 30536695 30536988 -212127365 + AluSg SINE Alu 1 303 0 1062 157 0 89 chr1 30537101 30537240 -212127113 + L1MB5 LINE L1 5901 6012 -162 1727 110 107 4 chr1 30537240 30537503 -212126850 + AluSg SINE Alu 1 290 -20 1062 157 0 89 chr1 30537503 30537599 -212126754 + L1MB5 LINE L1 6012 6115 -59 275 133 0 0 chr1 30537602 30537647 -212126706 + AluJb SINE Alu 1 45 -257 1469 113 24 5 chr1 30537647 30537859 -212126494 + AluJb SINE Alu 88 303 -9 344 203 0 0 chr1 30537926 30537985 -212126368 + L1MB5 LINE L1 6116 6174 0 329 232 24 0 chr1 30538631 30538717 -212125636 - MIR SINE MIR -61 147 75 328 240 125 31 chr1 30538740 30538836 -212125517 + L2 LINE L2 3209 3313 0 774 192 64 19 chr1 30538898 30539054 -212125299 + FRAM SINE Alu 1 163 -3 2258 64 43 0 chr1 30539074 30539356 -212124997 + AluY SINE Alu 1 294 -17 2110 75 11 11 chr1 30539486 30539765 -212124588 - AluSq SINE Alu -34 279 1 1438 160 126 8 chr1 30539847 30540109 -212124244 - AluJo SINE Alu -18 294 2 802 140 0 85 chr1 30540405 30540569 -212123784 + AluJb SINE Alu 156 305 -7 759 154 8 46 chr1 30540632 30540762 -212123591 - FLAM_C SINE Alu -8 125 1 337 300 9 18 chr1 30540762 30540872 -212123481 - L2 LINE L2 -2 3311 3203 780 147 0 70 chr1 30541090 30541233 -212123120 - FLAM_C SINE Alu 0 133 1 2176 93 3 13 chr1 30541407 30541707 -212122646 - AluSc SINE Alu -12 297 1 561 228 108 12 chr1 30541835 30542002 -212122351 + MIR SINE MIR 31 213 -49 228 254 0 18 chr1 30542039 30542094 -212122259 + L2 LINE L2 3210 3263 -9 1172 138 43 43 chr1 30542427 30542659 -212121694 - MER46A DNA MER2_type -4 232 1 2449 86 0 0 chr1 30542826 30543130 -212121223 - AluSg SINE Alu -6 304 1 643 209 0 43 chr1 30543434 30543573 -212120780 - FLAM_A SINE Alu 0 133 1 788 197 20 7 chr1 30543586 30543753 -212120600 - FRAM SINE Alu 0 169 1 2113 137 3 0 chr1 30543773 30544072 -212120281 - AluSx SINE Alu -12 300 1 198 0 0 0 chr1 30544072 30544094 -212120259 + (A)n Simple_repeat Simple_repeat 1 22 0 2206 92 18 0 chr1 30544689 30544973 -212119380 - AluSg SINE Alu -19 291 3 293 125 0 0 chr1 30544994 30545034 -212119319 - MER57A LTR ERV1 -69 334 295 1890 127 32 35 chr1 30545150 30545195 -212119158 - L1MB4 LINE L1 0 6180 6136 2137 117 10 7 chr1 30545195 30545493 -212118860 + AluSx SINE Alu 1 299 -13 1890 127 32 35 chr1 30545493 30545786 -212118567 - L1MB4 LINE L1 -44 6136 5843 729 244 30 10 chr1 30545874 30546075 -212118278 - L1MC4 LINE L1 -143 7899 7695 266 265 0 0 chr1 30546090 30546158 -212118195 - L1MC4 LINE L1 -281 7761 7694 447 220 35 87 chr1 30546188 30546299 -212118054 - AluJo SINE Alu -79 233 133 2020 121 0 10 chr1 30546299 30546597 -212117756 - AluSg SINE Alu -14 296 2 447 220 35 87 chr1 30546597 30546658 -212117695 - AluJo SINE Alu -179 133 70 192 179 0 0 chr1 30546814 30546853 -212117500 + A-rich Low_complexity Low_complexity 1 39 0 2431 82 3 3 chr1 30546886 30547189 -212117164 - AluSp SINE Alu -10 303 1 2334 88 7 7 chr1 30547253 30547548 -212116805 - AluSx SINE Alu -11 301 7 21 0 0 0 chr1 30548238 30548259 -212116094 + AT_rich Low_complexity Low_complexity 1 21 0 319 229 0 0 chr1 30548615 30548685 -212115668 - MIR SINE MIR -2 260 191 1069 154 17 11 chr1 30548686 30548861 -212115492 - AluSg/x SINE Alu -4 306 131 690 225 39 28 chr1 30548863 30549045 -212115308 - MIR SINE MIR -65 197 14 386 154 0 0 chr1 30549252 30549317 -212115036 + MIR SINE MIR 188 252 -10 1007 97 0 15 chr1 30549944 30550078 -212114275 - FLAM_C SINE Alu -1 132 1 676 147 29 143 chr1 30550246 30550311 -212114042 - MER112 DNA MER1_type -48 212 141 1916 141 0 44 chr1 30550311 30550630 -212113723 + AluJb SINE Alu 1 305 -7 676 147 29 143 chr1 30550630 30550802 -212113551 - MER112 DNA MER1_type -119 141 2 2364 73 3 22 chr1 30550892 30551205 -212113148 - AluSq SINE Alu -6 307 1 889 171 38 67 chr1 30553256 30553388 -212110965 + MIR SINE MIR 30 153 -109 2424 85 0 0 chr1 30553388 30553683 -212110670 + AluSg SINE Alu 1 295 -15 889 171 38 67 chr1 30553683 30553790 -212110563 + MIR SINE MIR 153 262 0 360 0 0 0 chr1 30554705 30554745 -212109608 + (TA)n Simple_repeat Simple_repeat 2 41 0 2078 93 7 4 chr1 30554746 30555026 -212109327 - AluSx SINE Alu 0 312 32 1613 164 11 4 chr1 30555325 30555587 -212108766 + AluJb SINE Alu 9 272 -40 183 42 0 0 chr1 30555608 30555632 -212108721 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 205 247 10 31 chr1 30555659 30555756 -212108597 + A-rich Low_complexity Low_complexity 1 95 0 252 0 0 0 chr1 30555909 30555937 -212108416 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1436 163 133 4 chr1 30556368 30556632 -212107721 - AluJo SINE Alu -14 298 1 2635 37 3 0 chr1 30559158 30559455 -212104898 - AluSp SINE Alu -11 302 5 2131 85 21 3 chr1 30559460 30559743 -212104610 - AluSx SINE Alu -11 301 14 750 168 87 38 chr1 30559887 30559957 -212104396 - MER69 DNA AcHobo 0 2526 2461 1162 131 145 102 chr1 30559957 30560240 -212104113 + AluJo SINE Alu 1 295 -7 750 168 87 38 chr1 30560240 30560434 -212103919 - MER69 DNA AcHobo -65 2461 2205 1064 248 166 24 chr1 30560436 30560600 -212103753 + L2 LINE L2 2460 2599 -714 2087 110 31 0 chr1 30560600 30560892 -212103461 - AluSx SINE Alu -11 301 1 1064 248 166 24 chr1 30560892 30561468 -212102885 + L2 LINE L2 2599 3308 -5 1834 133 97 13 chr1 30561613 30561922 -212102431 - MER7A DNA MER2_type -12 334 2 2258 83 0 24 chr1 30562024 30562348 -212102005 + AluSc SINE Alu 1 317 0 1953 129 26 23 chr1 30562356 30562665 -212101688 + AluSx SINE Alu 1 310 -2 3640 133 19 18 chr1 30562880 30563173 -212101180 + L1MB2 LINE L1 5537 5828 -343 2289 98 7 0 chr1 30563173 30563459 -212100894 + AluSc SINE Alu 3 290 -19 3640 133 19 18 chr1 30563459 30563795 -212100558 + L1MB2 LINE L1 5828 6167 -4 2033 128 10 7 chr1 30564206 30564504 -212099849 + AluSx SINE Alu 2 300 -12 1896 239 108 6 chr1 30564622 30565123 -212099230 - MLT1H1 LTR MaLR -3 552 1 1401 182 6 88 chr1 30566771 30567101 -212097252 + AluJo SINE Alu 1 303 -9 244 179 0 46 chr1 30567105 30567170 -212097183 - L2 LINE L2 -79 3234 3133 2203 113 0 0 chr1 30567445 30567756 -212096597 - AluSq SINE Alu 0 311 1 1837 147 44 3 chr1 30567808 30568101 -212096252 + AluSx SINE Alu 1 305 -7 219 69 0 0 chr1 30568158 30568187 -212096166 + (TTCTCC)n Simple_repeat Simple_repeat 1 29 0 2057 104 14 0 chr1 30568187 30568466 -212095887 - AluSx SINE Alu 0 312 30 1105 193 58 5 chr1 30568497 30568720 -212095633 + Charlie1 DNA MER1_type 1 235 -2526 567 165 6 114 chr1 30568708 30568798 -212095555 + Charlie1 DNA MER1_type 2621 2688 -73 * 2289 90 0 53 chr1 30568798 30569120 -212095233 - AluSx SINE Alu -7 305 1 567 165 6 114 chr1 30569120 30569187 -212095166 + Charlie1 DNA MER1_type 2688 2761 0 2245 94 3 17 chr1 30569766 30570064 -212094289 + AluSx SINE Alu 1 294 -18 2136 142 0 0 chr1 30570148 30570450 -212093903 + AluSx SINE Alu 1 302 -10 361 254 55 9 chr1 30570571 30570685 -212093668 + MIR SINE MIR 21 129 -79 2385 76 6 22 chr1 30570689 30571004 -212093349 - AluSp SINE Alu -3 310 1 184 182 0 0 chr1 30571005 30571038 -212093315 + MIR SINE MIR 115 147 -115 2070 128 13 7 chr1 30571051 30571355 -212092998 + AluSx SINE Alu 1 306 -6 1967 137 41 0 chr1 30571509 30571801 -212092552 + AluSq SINE Alu 1 304 -9 2610 47 0 0 chr1 30571973 30572270 -212092083 + AluY SINE Alu 1 297 -14 2309 107 3 0 chr1 30572774 30573073 -212091280 + AluSx SINE Alu 1 300 -12 1935 147 19 51 chr1 30573083 30573335 -212091018 + L1MB4 LINE L1 5819 6057 -123 2442 82 7 0 chr1 30573335 30573629 -212090724 + AluSc SINE Alu 1 296 -13 1935 147 19 51 chr1 30573629 30573750 -212090603 + L1MB4 LINE L1 6057 6180 0 350 274 59 15 chr1 30573776 30573911 -212090442 + L1MC4 LINE L1 7531 7671 -371 2427 86 0 0 chr1 30573943 30574235 -212090118 + AluSg SINE Alu 1 292 -18 1993 135 13 26 chr1 30574291 30574603 -212089750 + AluJb SINE Alu 1 308 -4 273 284 72 82 chr1 30575121 30575315 -212089038 - MIR SINE MIR -38 224 33 181 339 0 0 chr1 30575739 30575801 -212088552 - MIR SINE MIR -83 179 118 325 242 55 0 chr1 30575872 30575912 -212088441 + MIR SINE MIR 167 203 -59 378 0 0 0 chr1 30575912 30575954 -212088399 + (TG)n Simple_repeat Simple_repeat 2 43 0 325 242 55 0 chr1 30575954 30576004 -212088349 + MIR SINE MIR 203 262 0 281 279 57 29 chr1 30576405 30576444 -212087909 + MIR SINE MIR 113 149 -113 2179 113 0 25 chr1 30576444 30576762 -212087591 + AluSx SINE Alu 1 310 -2 281 279 57 29 chr1 30576762 30576862 -212087491 + MIR SINE MIR 149 256 -6 2269 112 3 3 chr1 30577222 30577535 -212086818 + AluSp SINE Alu 1 313 0 286 309 21 0 chr1 30577537 30577631 -212086722 + L3b LINE CR1 1139 1234 -349 625 225 73 53 chr1 30577758 30577909 -212086444 - MER69A DNA AcHobo -22 155 2 1371 230 130 54 chr1 30578142 30578673 -212085680 - MLT1E LTR MaLR 0 567 1 185 351 40 0 chr1 30578674 30578748 -212085605 + L2 LINE L2 3103 3179 -93 296 188 35 238 chr1 30578884 30578969 -212085384 + L1ME LINE L1 5615 5716 -405 1888 122 45 10 chr1 30578969 30579257 -212085096 + AluSx SINE Alu 1 298 -14 296 188 35 238 chr1 30579257 30579427 -212084926 + L1ME LINE L1 5716 5818 -303 2079 90 0 59 chr1 30579440 30579729 -212084624 - AluSg SINE Alu -38 272 1 2097 150 0 3 chr1 30580034 30580347 -212084006 + AluSx SINE Alu 1 312 0 383 242 153 68 chr1 30580755 30581003 -212083350 - MLT1L LTR MaLR -155 460 192 457 226 8 75 chr1 30581129 30581262 -212083091 + MER102b DNA MER1_type 218 341 0 515 267 147 77 chr1 30581286 30581675 -212082678 + MLT1J LTR MaLR 1 416 -95 1191 183 89 0 chr1 30581786 30581999 -212082354 + AluJb SINE Alu 5 236 -76 869 212 0 0 chr1 30581999 30582170 -212082183 + AluJo/FRAM SINE Alu 138 308 0 449 234 0 24 chr1 30582586 30582710 -212081643 - LTR67 LTR ERVL -3 554 434 958 143 18 0 chr1 30582776 30582944 -212081409 - MER5A DNA MER1_type -18 171 1 1697 176 26 158 chr1 30583602 30583653 -212080700 - MER34 LTR ERV1 -3 539 483 2481 94 0 0 chr1 30583653 30583962 -212080391 - AluSx SINE Alu -3 309 1 1697 176 26 158 chr1 30583962 30584198 -212080155 - MER34 LTR ERV1 -59 483 375 2250 105 17 0 chr1 30584198 30584493 -212079860 + AluSq SINE Alu 1 300 -13 1697 176 26 158 chr1 30584493 30584825 -212079528 - MER34 LTR ERV1 -167 375 1 2175 134 0 13 chr1 30584863 30585177 -212079176 + AluSx SINE Alu 1 310 -2 834 211 70 0 chr1 30585328 30585556 -212078797 + L1M4 LINE L1 3830 4073 -2073 732 111 178 72 chr1 30585564 30585698 -212078655 + L1MB7 LINE L1 5966 6125 -59 1947 157 0 19 chr1 30585698 30586011 -212078342 + AluJb SINE Alu 5 311 -1 732 111 178 72 chr1 30586011 30586056 -212078297 + L1MB7 LINE L1 6125 6164 -20 505 126 0 58 chr1 30586062 30586149 -212078204 - AluSg/x SINE Alu -20 290 209 272 146 0 0 chr1 30586149 30586190 -212078163 + U6 snRNA snRNA 65 105 -2 468 191 89 89 chr1 30586218 30586309 -212078044 - MLT1L LTR MaLR -62 553 460 2245 115 0 0 chr1 30586309 30586604 -212077749 - AluSx SINE Alu -17 295 1 468 191 89 89 chr1 30586604 30586669 -212077684 - MLT1L LTR MaLR -154 461 397 721 206 0 8 chr1 30586695 30586821 -212077532 - FLAM_A SINE Alu -8 125 1 600 216 317 5 chr1 30586846 30587045 -212077308 - MLT1K LTR MaLR 0 588 328 2356 98 3 0 chr1 30587062 30587367 -212076986 - AluSq SINE Alu -7 306 1 321 244 13 13 chr1 30587486 30587564 -212076789 - MLT1K LTR MaLR -362 226 149 215 244 35 70 chr1 30587814 30587900 -212076453 - MIR SINE MIR -167 95 13 223 191 0 111 chr1 30587971 30588034 -212076319 - L2 LINE L2 -180 3092 3037 1257 57 0 0 chr1 30588034 30588193 -212076160 + L1P5 LINE L1 5629 5787 -364 2576 77 3 0 chr1 30588193 30588505 -212075848 + AluSp SINE Alu 1 313 0 1717 147 14 35 chr1 30588537 30588822 -212075531 + AluJb SINE Alu 24 302 -10 928 117 0 0 chr1 30588822 30588959 -212075394 - Tigger1 DNA MER2_type -459 1959 1823 1295 178 9 9 chr1 30588959 30589178 -212075175 + AluSx SINE Alu 1 219 -93 2431 78 5 101 chr1 30589178 30589537 -212074816 - Tigger1 DNA MER2_type -581 1837 1526 2171 129 0 13 chr1 30589537 30589848 -212074505 + AluSx SINE Alu 1 307 -5 2431 78 5 101 chr1 30589848 30589926 -212074427 - Tigger1 DNA MER2_type -892 1526 1442 665 139 0 70 chr1 30589927 30590042 -212074311 + FLAM_C SINE Alu 2 108 -35 2409 91 0 0 chr1 30590676 30590984 -212073369 + AluSc SINE Alu 1 308 -1 2483 57 0 0 chr1 30591621 30591919 -212072434 - AluY SINE Alu -13 298 1 1856 156 0 7 chr1 30591949 30592244 -212072109 + AluJo SINE Alu 1 293 -19 268 170 0 0 chr1 30592245 30592292 -212072061 - Tigger1 DNA MER2_type -2371 47 1 * 586 246 15 0 chr1 30592292 30592421 -212071932 - MER2 DNA MER2_type -214 131 1 186 247 240 68 chr1 30592429 30592575 -212071778 - L2 LINE L2 -407 2907 2737 1972 148 0 0 chr1 30592575 30592877 -212071476 - AluJb SINE Alu 0 306 5 1211 197 5 0 chr1 30592924 30593147 -212071206 - AluJo SINE Alu -2 310 87 733 187 45 58 chr1 30593159 30593220 -212071133 - AluJo/FRAM SINE Alu -13 289 229 2505 84 0 0 chr1 30593220 30593529 -212070824 + AluY SINE Alu 1 309 -2 733 187 45 58 chr1 30593529 30593622 -212070731 - AluJo/FRAM SINE Alu -73 229 137 636 246 86 21 chr1 30593628 30593815 -212070538 - L2 LINE L2 -592 2722 2524 2553 53 0 0 chr1 30594142 30594445 -212069908 - AluY SINE Alu -8 303 1 2137 113 55 0 chr1 30594554 30594847 -212069506 + AluSq SINE Alu 1 309 -4 381 93 0 0 chr1 30594902 30594956 -212069397 - AluS SINE Alu -227 76 23 287 146 0 0 chr1 30594975 30595016 -212069337 - Alu SINE Alu -261 41 1 207 0 0 0 chr1 30595024 30595047 -212069306 + (TATG)n Simple_repeat Simple_repeat 2 24 0 2580 73 0 0 chr1 30595047 30595347 -212069006 - AluSq SINE Alu -13 300 1 343 271 85 65 chr1 30595348 30595547 -212068806 - L2 LINE L2 -16 3297 3095 640 202 161 57 chr1 30595954 30596040 -212068313 + MIR SINE MIR 50 126 -136 2394 90 0 3 chr1 30596040 30596341 -212068012 - AluSg1 SINE Alu -9 300 1 640 202 161 57 chr1 30596341 30596447 -212067906 + MIR SINE MIR 126 262 0 543 298 41 37 chr1 30596431 30596649 -212067704 - MIR SINE MIR 0 262 44 * 331 308 18 0 chr1 30597327 30597468 -212066885 + L1ME LINE L1 5450 5592 -529 559 284 35 15 chr1 30597561 30597758 -212066595 - MIR SINE MIR -11 251 51 400 327 115 5 chr1 30597829 30598037 -212066316 - MIR SINE MIR -12 250 20 1195 93 17 0 chr1 30598450 30598622 -212065731 - L1PA11 LINE L1 0 6174 6000 2417 67 0 51 chr1 30598771 30599087 -212065266 + AluSg SINE Alu 1 300 -10 1027 241 68 21 chr1 30599735 30599748 -212064605 - MIR SINE MIR -3 259 248 2260 103 0 0 chr1 30599748 30600029 -212064324 + AluSx SINE Alu 1 284 -28 324 0 0 0 chr1 30600029 30600065 -212064288 + (CA)n Simple_repeat Simple_repeat 1 36 0 1027 241 68 21 chr1 30600073 30600295 -212064058 - MIR SINE MIR -14 248 13 324 246 70 13 chr1 30600685 30600810 -212063543 - MIR SINE MIR -78 130 3 386 219 110 0 chr1 30600868 30600950 -212063403 - L2 LINE L2 -5 3308 3218 266 294 0 0 chr1 30601180 30601248 -212063105 + MLT1H LTR MaLR 12 79 -470 872 184 0 112 chr1 30601279 30601426 -212062927 + AluJ SINE Alu 9 128 -184 2552 54 10 0 chr1 30601426 30601724 -212062629 + AluY SINE Alu 7 307 -4 872 184 0 112 chr1 30601724 30601782 -212062571 + AluJ SINE Alu 128 191 -121 3425 129 10 23 chr1 30601784 30601906 -212062447 - MER41E LTR ERV1 0 512 390 2010 156 0 0 chr1 30601906 30602195 -212062158 + AluSx SINE Alu 1 289 -23 3425 129 10 23 chr1 30602195 30602591 -212061762 - MER41E LTR ERV1 -122 390 1 811 113 0 35 chr1 30602672 30602787 -212061566 + AluJ SINE Alu 188 298 -14 1052 167 29 1 chr1 30602788 30602832 -212061521 - LTR32 LTR ERVL -170 301 260 3725 120 51 83 chr1 30602832 30603231 -212061122 + LTR8A LTR ERV1 1 366 -361 1984 164 10 6 chr1 30603231 30603542 -212060811 - AluJo SINE Alu 0 312 1 3725 120 51 83 chr1 30603542 30603891 -212060462 + LTR8A LTR ERV1 366 725 -2 1052 167 29 1 chr1 30603891 30604093 -212060260 - LTR32 LTR ERVL -211 260 15 407 232 29 22 chr1 30604639 30604777 -212059576 + LTR67 LTR ERVL 418 556 -1 581 225 98 112 chr1 30604860 30605068 -212059285 - MLT1J LTR MaLR -141 370 168 2702 169 24 62 chr1 30605068 30605411 -212058942 + MER34B LTR ERV1 3 316 -249 2447 75 0 3 chr1 30605411 30605706 -212058647 + AluSq SINE Alu 1 294 -19 2702 169 24 62 chr1 30605706 30605947 -212058406 + MER34B LTR ERV1 316 565 0 581 225 98 112 chr1 30605947 30606094 -212058259 - MLT1J LTR MaLR -343 168 20 472 185 0 12 chr1 30606193 30606274 -212058079 + FRAM/FAM SINE Alu 8 87 -98 481 317 43 6 chr1 30606287 30606451 -212057902 - MIR SINE MIR -80 182 13 347 289 141 0 chr1 30606804 30606932 -212057421 - MIR SINE MIR -60 202 57 721 79 0 0 chr1 30606932 30607021 -212057332 - AluY SINE Alu -221 90 2 3973 92 16 14 chr1 30607021 30607598 -212056755 - LTR8 LTR ERV1 -113 578 1 2572 155 78 28 chr1 30607623 30607983 -212056370 - L1MB3 LINE L1 0 6183 5843 1830 158 7 20 chr1 30607983 30608280 -212056073 - AluSx SINE Alu -15 297 5 2001 147 3 3 chr1 30608285 30608585 -212055768 - AluJo SINE Alu -12 300 1 2572 155 78 28 chr1 30608585 30608755 -212055598 - L1MB3 LINE L1 -343 5840 5620 1112 173 6 0 chr1 30608755 30608934 -212055419 + FRAM SINE Alu 1 174 -2 2206 108 0 16 chr1 30608957 30609263 -212055090 - AluY SINE Alu -10 301 1 912 181 184 6 chr1 30609263 30609570 -212054783 - L1MB3 LINE L1 -637 5534 5173 2437 84 7 0 chr1 30609851 30610148 -212054205 + AluSc SINE Alu 1 299 -10 183 80 0 0 chr1 30610149 30610174 -212054179 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 921 120 0 0 chr1 30610226 30610351 -212054002 - FLAM_C SINE Alu -8 125 1 787 249 105 4 chr1 30610358 30610587 -212053766 - MIR SINE MIR -10 252 1 1494 180 67 11 chr1 30610671 30610780 -212053573 + AluJo SINE Alu 2 103 -209 2074 121 4 4 chr1 30610780 30611060 -212053293 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr1 30611060 30611087 -212053266 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1494 180 67 11 chr1 30611087 30611260 -212053093 + AluJo SINE Alu 102 301 -11 514 333 64 5 chr1 30611267 30611546 -212052807 + L1ME3A LINE L1 5412 5706 -456 1956 143 0 0 chr1 30611568 30611848 -212052505 + AluSx SINE Alu 1 280 -32 271 270 55 32 chr1 30611890 30612099 -212052254 + L1ME3A LINE L1 5728 5937 -233 2420 99 3 0 chr1 30612226 30612538 -212051815 + AluSp SINE Alu 1 313 0 241 265 0 60 chr1 30612609 30612692 -212051661 + MIR SINE MIR 66 143 -65 276 222 87 3 chr1 30612753 30612840 -212051513 + MIR SINE MIR 23 125 -83 23 0 0 0 chr1 30612866 30612889 -212051464 + AT_rich Low_complexity Low_complexity 1 23 0 621 99 50 30 chr1 30612889 30612990 -212051363 - U6 snRNA snRNA -4 103 1 22 0 0 0 chr1 30612995 30613017 -212051336 + AT_rich Low_complexity Low_complexity 1 22 0 2221 128 3 7 chr1 30613086 30613392 -212050961 - AluSx SINE Alu -7 305 1 478 313 8 0 chr1 30613404 30613532 -212050821 - L2 LINE L2 -244 3069 2941 485 288 44 13 chr1 30613971 30614180 -212050173 + MIR SINE MIR 2 209 -53 437 113 16 0 chr1 30614304 30614366 -212049987 - U7 snRNA snRNA 0 63 1 247 315 63 16 chr1 30614368 30614495 -212049858 + MIR SINE MIR 124 256 -6 534 151 0 0 chr1 30614507 30614613 -212049740 + (TGGA)n Simple_repeat Simple_repeat 2 107 0 314 206 176 76 chr1 30615064 30615195 -212049158 + MIR3 SINE MIR 62 205 -3 1406 108 10 5 chr1 30615701 30615929 -212048424 + AluY SINE Alu 98 311 0 850 226 0 33 chr1 30615931 30616112 -212048241 + FAM SINE Alu 1 175 0 898 91 0 33 chr1 30616317 30616438 -212047915 - FLAM_C SINE Alu -13 130 14 1795 154 3 46 chr1 30616558 30616734 -212047619 - AluJb SINE Alu -18 294 135 2100 115 3 44 chr1 30616734 30617055 -212047298 - AluSx SINE Alu 0 312 5 1795 154 3 46 chr1 30617055 30617183 -212047170 - AluJb SINE Alu -177 135 3 660 219 57 31 chr1 30617189 30617417 -212046936 - MER113 DNA MER1_type? -285 236 3 299 203 14 14 chr1 30617447 30617516 -212046837 - MLT1K LTR MaLR -8 580 512 255 261 198 0 chr1 30617946 30618057 -212046296 - MIR SINE MIR -84 178 46 1779 124 76 7 chr1 30618625 30618900 -212045453 - AluSx SINE Alu -6 306 13 1045 104 0 0 chr1 30618901 30619035 -212045318 - AluSq/x SINE Alu -178 134 1 2480 76 3 3 chr1 30619474 30619776 -212044577 - AluSc SINE Alu -3 306 5 432 163 149 85 chr1 30621285 30621332 -212043021 + MLT1A1 LTR MaLR 1 44 -321 2393 85 7 0 chr1 30621332 30621626 -212042727 - AluSp SINE Alu -17 296 1 432 163 149 85 chr1 30621626 30621719 -212042634 + MLT1A1 LTR MaLR 44 150 -215 656 137 0 10 chr1 30621728 30621830 -212042523 + AluJb SINE Alu 204 304 -8 515 200 69 15 chr1 30621892 30622022 -212042331 + MLT1A1 LTR MaLR 171 307 -58 2070 141 0 22 chr1 30622026 30622345 -212042008 - AluJo SINE Alu 0 312 1 234 203 145 14 chr1 30622347 30622416 -212041937 + HsTC2 DNA Tc2 1814 1891 -7 978 92 8 8 chr1 30622470 30622601 -212041752 + AluSq/x SINE Alu 3 133 -179 2069 142 0 16 chr1 30622604 30622920 -212041433 + AluSq SINE Alu 1 311 -2 349 244 83 65 chr1 30622974 30623142 -212041211 + L1ME4a LINE L1 5946 6116 -5 1288 133 5 35 chr1 30623167 30623370 -212040983 + AluJo SINE Alu 7 203 -109 1893 121 3 101 chr1 30623612 30623756 -212040597 + AluJb SINE Alu 1 93 -219 2239 118 0 0 chr1 30623756 30624053 -212040300 + AluSg SINE Alu 1 297 -13 1893 121 3 101 chr1 30624053 30624254 -212040099 + AluJb SINE Alu 93 312 0 605 287 35 15 chr1 30624276 30624478 -212039875 - MIR SINE MIR -9 253 48 531 299 110 58 chr1 30624493 30624678 -212039675 - L2 LINE L2 -3 3269 3095 2262 113 3 3 chr1 30624678 30624980 -212039373 + AluSx SINE Alu 1 302 -10 531 299 110 58 chr1 30624980 30625158 -212039195 - L2 LINE L2 -177 3095 2887 300 269 47 125 chr1 30625178 30625354 -212038999 + L2 LINE L2 2813 2964 -308 2384 89 3 0 chr1 30625354 30625656 -212038697 - AluSg SINE Alu -7 303 1 300 269 47 125 chr1 30625656 30625735 -212038618 + L2 LINE L2 2964 3048 -224 1729 180 0 10 chr1 30625743 30626037 -212038316 + AluJb SINE Alu 13 303 -9 2331 184 36 22 chr1 30626037 30626129 -212038224 + Charlie1 DNA MER1_type 2221 2310 -451 2245 90 17 13 chr1 30626129 30626428 -212037925 + AluSq SINE Alu 2 301 -12 2331 184 36 22 chr1 30626428 30626869 -212037484 + Charlie1 DNA MER1_type 2310 2761 0 698 182 241 16 chr1 30627193 30627283 -212037070 + MER96B DNA MER1_type? 1 69 -348 1915 127 3 84 chr1 30627283 30627615 -212036738 - AluSx SINE Alu -7 305 1 698 182 241 16 chr1 30627615 30627758 -212036595 + MER96B DNA MER1_type? 69 179 -238 2471 66 0 28 chr1 30627758 30628077 -212036276 - AluY SINE Alu 0 311 2 698 182 241 16 chr1 30628077 30628095 -212036258 + MER96B DNA MER1_type? 179 310 -107 798 355 55 28 chr1 30628429 30628566 -212035787 - L2 LINE L2 -352 2962 2830 2422 89 0 0 chr1 30628566 30628858 -212035495 + AluSg SINE Alu 1 292 -18 798 355 55 28 chr1 30628858 30629359 -212034994 - L2 LINE L2 -484 2830 2307 208 340 115 35 chr1 30629361 30629673 -212034680 - L2 LINE L2 -1171 2143 1807 2140 101 42 0 chr1 30629704 30629991 -212034362 + AluSq SINE Alu 1 299 -14 416 211 60 38 chr1 30630002 30630081 -212034272 + L1MC5 LINE L1 7529 7605 -356 1894 151 9 25 chr1 30630081 30630398 -212033955 + AluJo SINE Alu 1 312 0 416 211 60 38 chr1 30630398 30630503 -212033850 + L1MC5 LINE L1 7605 7717 -244 322 130 0 0 chr1 30630505 30630559 -212033794 + Alu SINE Alu 243 296 -4 696 150 53 9 chr1 30630570 30630683 -212033670 + FLAM_C SINE Alu 3 120 -23 296 143 20 0 chr1 30630755 30630804 -212033549 + LTR16A LTR ERVL 395 444 -6 237 323 54 46 chr1 30631172 30631302 -212033051 + L2 LINE L2 2934 3064 -208 946 273 101 59 chr1 30631431 30631656 -212032697 - L2 LINE L2 -1 3312 3098 840 159 0 43 chr1 30631656 30631794 -212032559 - FLAM_C SINE Alu 0 133 2 946 273 101 59 chr1 30631794 30631859 -212032494 - L2 LINE L2 -215 3098 3037 690 186 154 19 chr1 30631859 30632015 -212032338 + MER69A DNA AcHobo 1 177 0 946 273 101 59 chr1 30632015 30632419 -212031934 - L2 LINE L2 -276 3037 2570 723 224 67 12 chr1 30632584 30632692 -212031661 + MER5A DNA MER1_type 9 131 -58 2382 97 0 10 chr1 30632692 30633001 -212031352 + AluSx SINE Alu 1 306 -6 723 224 67 12 chr1 30633001 30633057 -212031296 + MER5A DNA MER1_type 131 182 -7 624 316 63 63 chr1 30633144 30633539 -212030814 + L2 LINE L2 2827 3221 -51 498 201 30 67 chr1 30633641 30633775 -212030578 + MIR SINE MIR 13 141 -121 383 293 18 42 chr1 30634691 30634858 -212029495 - MIR SINE MIR -64 198 36 202 250 300 12 chr1 30635093 30635173 -212029180 + MIR SINE MIR 44 146 -62 4132 175 24 64 chr1 30635192 30635268 -212029085 + L1MB2 LINE L1 4357 4435 -1748 2415 96 3 10 chr1 30635268 30635582 -212028771 + AluSx SINE Alu 1 312 0 4132 175 24 64 chr1 30635582 30635650 -212028703 + L1MB2 LINE L1 4435 4504 -1679 2532 61 0 0 chr1 30635650 30635944 -212028409 + AluY SINE Alu 1 294 -17 4132 175 24 64 chr1 30635944 30636538 -212027815 + L1MB2 LINE L1 4504 5121 -1062 2117 102 3 0 chr1 30636538 30636832 -212027521 + AluSx SINE Alu 1 295 -17 4132 175 24 64 chr1 30636832 30636843 -212027510 + L1MB2 LINE L1 5121 5131 -1052 1709 179 3 3 chr1 30636843 30637140 -212027213 + AluJo SINE Alu 1 297 -15 4132 175 24 64 chr1 30637140 30637782 -212026571 + L1MB2 LINE L1 5131 5798 -385 2147 96 23 0 chr1 30637782 30638083 -212026270 - AluSx SINE Alu 0 312 5 4132 175 24 64 chr1 30638083 30638099 -212026254 + L1MB2 LINE L1 5798 5813 -370 2389 47 0 38 chr1 30638099 30638417 -212025936 - AluY SINE Alu -4 307 2 4132 175 24 64 chr1 30638417 30638813 -212025540 + L1MB2 LINE L1 5813 6224 41 2030 133 3 0 chr1 30638813 30639115 -212025238 - AluSx SINE Alu -9 303 1 4132 175 24 64 chr1 30639115 30639150 -212025203 + L1MB2 LINE L1 6224 6064 -119 222 37 0 0 chr1 30639150 30639177 -212025176 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 4132 175 24 64 chr1 30639177 30639255 -212025098 + L1MB2 LINE L1 6063 6143 -40 718 135 0 10 chr1 30639281 30639385 -212024968 + FLAM_C SINE Alu 21 123 -20 735 230 28 115 chr1 30639629 30639865 -212024488 + MIR SINE MIR 1 209 -53 2219 106 0 0 chr1 30639865 30640166 -212024187 + AluSx SINE Alu 1 301 -11 735 230 28 115 chr1 30640166 30640216 -212024137 + MIR SINE MIR 209 262 0 295 367 143 5 chr1 30640223 30640419 -212023934 + L2 LINE L2 3045 3267 -5 210 156 0 0 chr1 30640525 30640557 -212023796 + MIR SINE MIR 117 148 -114 1410 184 39 32 chr1 30640579 30640862 -212023491 + AluJo SINE Alu 11 295 -17 2280 85 7 0 chr1 30640866 30641172 -212023181 + AluY SINE Alu 1 308 -3 2132 114 0 0 chr1 30641188 30641485 -212022868 + AluSx SINE Alu 1 297 -15 186 229 0 0 chr1 30641530 30641565 -212022788 + L2 LINE L2 3220 3254 -18 1944 141 0 0 chr1 30642179 30642463 -212021890 - AluSx SINE Alu -28 284 1 460 269 113 12 chr1 30642577 30642737 -212021616 + MIR SINE MIR 22 197 -65 187 103 0 0 chr1 30642772 30642801 -212021552 + L2 LINE L2 3244 3272 0 389 315 42 29 chr1 30642874 30643046 -212021307 + MIR3 SINE MIR 19 191 -38 1657 145 3 61 chr1 30643135 30643446 -212020907 + AluJo SINE Alu 1 293 -19 1301 172 3 134 chr1 30643471 30643814 -212020539 + AluSx SINE Alu 1 298 -14 493 248 23 8 chr1 30644674 30644807 -212019546 - MIR SINE MIR -58 150 16 296 337 23 0 chr1 30644824 30644910 -212019443 - L2 LINE L2 0 3313 3226 1989 71 48 4 chr1 30645067 30645359 -212018994 - AluSc SINE Alu 0 304 1 424 259 167 12 chr1 30645884 30646046 -212018307 - MIR SINE MIR -6 256 70 204 308 0 13 chr1 30646076 30646154 -212018199 + (CCA)n Simple_repeat Simple_repeat 2 78 0 1920 142 0 6 chr1 30646308 30646619 -212017734 + AluJb SINE Alu 1 309 -3 247 298 6 58 chr1 30647069 30647265 -212017088 + GA-rich Low_complexity Low_complexity 1 185 0 826 138 0 0 chr1 30647579 30647702 -212016651 - FLAM_C SINE Alu -20 123 1 443 237 136 0 chr1 30647754 30647872 -212016481 - L1MC5 LINE L1 -519 7442 7309 2150 122 0 0 chr1 30648397 30648709 -212015644 - AluSx SINE Alu 0 312 1 706 103 8 51 chr1 30649049 30649166 -212015187 + FLAM_C SINE Alu 30 141 -2 254 128 0 21 chr1 30649557 30649604 -212014749 - MIR SINE MIR -98 164 119 428 129 14 0 chr1 30649609 30649679 -212014674 + L2 LINE L2 2473 2543 -771 1666 109 0 81 chr1 30649682 30649967 -212014386 + AluSx SINE Alu 1 262 -50 555 221 7 40 chr1 30649975 30650124 -212014229 + L1MC5 LINE L1 7299 7442 -519 1432 109 0 199 chr1 30650176 30650533 -212013820 + AluSx SINE Alu 1 286 -16 730 192 51 128 chr1 30650575 30650809 -212013544 - LTR33 LTR ERVL -305 216 1 325 258 39 8 chr1 30650955 30651083 -212013270 + GA-rich Low_complexity Low_complexity 4 135 0 755 175 6 73 chr1 30651117 30651294 -212013059 - FRAM SINE Alu 0 166 2 396 159 0 0 chr1 30651297 30651360 -212012993 + MLT1D LTR MaLR 443 505 0 261 246 199 12 chr1 30651441 30651612 -212012741 + L1MC5 LINE L1 7268 7470 -491 2300 84 0 0 chr1 30651614 30651910 -212012443 + AluSx SINE Alu 1 296 -16 1265 219 140 4 chr1 30651916 30652401 -212011952 - L1MC4a LINE L1 -558 7250 6535 706 149 26 0 chr1 30652444 30652558 -212011795 - FLAM_C SINE Alu 0 143 27 2450 162 45 14 chr1 30653611 30653674 -212010679 - L1MB3 LINE L1 0 6183 6123 2302 102 0 0 chr1 30653674 30653978 -212010375 - AluSx SINE Alu -8 304 1 2450 162 45 14 chr1 30653978 30654402 -212009951 - L1MB3 LINE L1 -60 6123 5681 2274 90 0 3 chr1 30654812 30655124 -212009229 - AluY SINE Alu 0 311 1 1412 184 228 0 chr1 30655458 30655778 -212008575 + MSTD LTR MaLR 2 394 -2 266 283 30 72 chr1 30656026 30656192 -212008161 - L1MC4 LINE L1 -124 7918 7760 1856 131 40 3 chr1 30656205 30656503 -212007850 + AluSx SINE Alu 1 309 -3 2159 95 0 3 chr1 30656659 30656955 -212007398 - AluY SINE Alu -16 295 1 976 138 7 0 chr1 30657406 30657558 -212006795 - AluSx SINE Alu -159 153 1 968 193 0 35 chr1 30657558 30657760 -212006593 + AluJo SINE Alu 101 295 -17 2401 78 3 0 chr1 30657787 30658096 -212006257 + AluSp SINE Alu 1 310 -3 1043 118 7 0 chr1 30658691 30658843 -212005510 - AluSx SINE Alu -159 153 1 922 206 0 34 chr1 30658843 30659047 -212005306 + AluJo SINE Alu 101 297 -15 2371 73 3 0 chr1 30659074 30659377 -212004976 + AluSp SINE Alu 1 304 -9 1055 105 7 0 chr1 30659963 30660115 -212004238 - AluSx SINE Alu -159 153 1 951 197 0 35 chr1 30660115 30660318 -212004035 + AluJo SINE Alu 101 296 -16 2270 81 3 0 chr1 30660345 30660641 -212003712 + AluSp SINE Alu 1 297 -16 261 225 90 81 chr1 30660660 30660771 -212003582 + MER5A DNA MER1_type 78 189 0 22 0 0 0 chr1 30660929 30660951 -212003402 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 30661387 30661419 -212002934 + AT_rich Low_complexity Low_complexity 1 32 0 1900 154 3 3 chr1 30661618 30661930 -212002423 - AluSx SINE Alu 0 312 1 224 372 21 21 chr1 30662107 30662136 -212002217 - L3b LINE CR1 -328 1255 1227 1759 164 7 16 chr1 30662136 30662446 -212001907 - AluJb SINE Alu -5 307 1 224 372 21 21 chr1 30662446 30662510 -212001843 - L3b LINE CR1 -355 1228 1162 855 302 31 16 chr1 30662958 30663213 -212001140 + MIR SINE MIR 3 261 -1 640 247 41 21 chr1 30663218 30663412 -212000941 - MIR SINE MIR -32 230 33 22 0 0 0 chr1 30663567 30663589 -212000764 + AT_rich Low_complexity Low_complexity 1 22 0 1646 146 17 40 chr1 30663611 30663912 -212000441 + AluJb SINE Alu 12 305 -7 414 53 0 0 chr1 30663966 30664023 -212000330 + (TA)n Simple_repeat Simple_repeat 2 58 0 1844 142 0 0 chr1 30664023 30664305 -212000048 - AluSx SINE Alu -29 283 2 443 167 68 61 chr1 30664328 30664460 -211999893 - L1MC4 LINE L1 -137 7905 7773 182 262 16 33 chr1 30664524 30664585 -211999768 + MER5B DNA MER1_type 84 143 -35 1367 137 34 0 chr1 30664684 30664888 -211999465 - MER46A DNA MER2_type 0 236 26 1517 155 63 36 chr1 30664988 30665291 -211999062 - AluJb SINE Alu 0 312 2 24 0 0 0 chr1 30667225 30667249 -211997104 + AT_rich Low_complexity Low_complexity 1 24 0 2038 95 3 24 chr1 30667944 30668262 -211996091 - AluSp SINE Alu 0 312 1 1085 77 0 14 chr1 30668263 30668406 -211995947 - AluSq/x SINE Alu -172 141 1 251 118 79 13 chr1 30668425 30668501 -211995852 - L1ME4a LINE L1 0 6121 6041 689 174 0 16 chr1 30668945 30669066 -211995287 - FRAM SINE Alu -12 164 46 859 188 13 0 chr1 30669095 30669249 -211995104 + FRAM SINE Alu 9 164 -12 1609 183 0 28 chr1 30669309 30669599 -211994754 - AluJb SINE Alu -30 282 1 2108 116 0 0 chr1 30669601 30669895 -211994458 - AluSq SINE Alu -19 294 1 602 229 25 8 chr1 30669918 30670040 -211994313 - FLAM_C SINE Alu -18 125 2 2037 107 3 3 chr1 30670461 30670750 -211993603 - AluSc SINE Alu -12 297 9 1106 162 192 8 chr1 30670968 30671202 -211993151 - AluJb SINE Alu -35 277 1 215 358 73 9 chr1 30671353 30671462 -211992891 + MIR SINE MIR 36 151 -57 31 26 0 0 chr1 30671956 30671994 -211992359 + AT_rich Low_complexity Low_complexity 1 38 0 308 300 67 25 chr1 30672486 30672606 -211991747 + MIR SINE MIR 64 188 -74 2278 76 23 7 chr1 30672619 30672921 -211991432 + AluY SINE Alu 1 307 -4 2052 70 0 0 chr1 30672921 30673180 -211991173 + AluY SINE Alu 1 259 -52 237 219 6 3 chr1 30674033 30674082 -211990271 + MIR SINE MIR 107 157 -51 218 182 23 0 chr1 30674190 30674234 -211990119 + MIR SINE MIR 170 214 -48 1819 155 93 48 chr1 30674848 30675247 -211989106 - MSTA LTR MaLR -11 417 1 212 323 0 16 chr1 30675363 30675425 -211988928 - L2 LINE L2 -186 3086 3026 2327 70 7 0 chr1 30675893 30676191 -211988162 + AluY SINE Alu 1 300 -11 300 284 113 28 chr1 30676238 30676379 -211987974 - L2 LINE L2 -299 2973 2821 196 235 39 0 chr1 30676877 30676928 -211987425 + MIR SINE MIR 93 145 -63 1936 91 12 63 chr1 30676953 30677272 -211987081 + AluSx SINE Alu 1 303 -9 375 232 63 11 chr1 30677673 30677768 -211986585 + MIR SINE MIR 48 147 -61 717 131 31 17 chr1 30678078 30678304 -211986049 - AluJb SINE Alu -1 311 2 231 329 26 53 chr1 30678639 30678730 -211985623 + MER5A DNA MER1_type 18 110 -79 1656 181 10 0 chr1 30678730 30679028 -211985325 - AluJo SINE Alu -11 301 1 231 329 26 53 chr1 30679028 30679047 -211985306 + MER5A DNA MER1_type 110 128 -61 2254 101 0 0 chr1 30679047 30679353 -211985000 - AluSq SINE Alu -7 306 1 231 329 26 53 chr1 30679353 30679393 -211984960 + MER5A DNA MER1_type 128 165 -24 229 250 21 0 chr1 30679459 30679507 -211984846 - L2 LINE L2 -18 3254 3206 192 40 0 0 chr1 30681317 30681342 -211983011 + (CA)n Simple_repeat Simple_repeat 2 26 0 1795 109 4 0 chr1 30681615 30681872 -211982481 + AluSx SINE Alu 53 310 -2 577 286 56 71 chr1 30681872 30681931 -211982422 - MIR SINE MIR -9 253 195 2229 97 7 0 chr1 30681931 30682231 -211982122 - AluSp SINE Alu -11 302 1 577 286 56 71 chr1 30682231 30682426 -211981927 - MIR SINE MIR -67 195 1 27 29 0 0 chr1 30682555 30682589 -211981764 + AT_rich Low_complexity Low_complexity 1 34 0 2165 117 3 0 chr1 30682647 30682955 -211981398 - AluSp SINE Alu -4 309 1 2029 101 0 46 chr1 30682957 30683283 -211981070 - AluY SINE Alu 0 311 1 1767 149 0 42 chr1 30683283 30683591 -211980762 - AluSx SINE Alu -15 297 2 276 336 75 0 chr1 30684124 30684231 -211980122 + MIR SINE MIR 31 145 -63 2423 88 0 0 chr1 30684365 30684659 -211979694 + AluSg SINE Alu 3 296 -14 357 208 42 0 chr1 30684782 30684854 -211979499 + MIR SINE MIR 78 152 -56 209 217 65 0 chr1 30685486 30685532 -211978821 + MIR SINE MIR 120 168 -94 306 288 0 0 chr1 30685549 30685622 -211978731 + MIR SINE MIR 46 118 -90 2160 118 14 0 chr1 30685622 30685918 -211978435 - AluY SINE Alu -11 300 1 1178 214 68 4 chr1 30685927 30686179 -211978174 - AluJb SINE Alu -9 303 36 609 192 0 0 chr1 30686179 30686283 -211978070 - FLAM_A SINE Alu -16 126 23 1779 98 0 5 chr1 30686358 30686582 -211977771 - AluSg SINE Alu -87 223 1 203 318 58 58 chr1 30688842 30688996 -211975357 - MIR3 SINE MIR -52 156 3 265 204 15 15 chr1 30689146 30689215 -211975138 + MIR SINE MIR 61 124 -84 364 264 72 26 chr1 30689420 30689562 -211974791 + MIR SINE MIR 2 149 -62 2133 124 0 3 chr1 30689601 30689891 -211974462 - AluSx SINE Alu -23 289 1 268 282 149 29 chr1 30689913 30690087 -211974266 - MIR SINE MIR -42 220 26 * 555 272 82 44 chr1 30690027 30690233 -211974120 + MIR SINE MIR 22 235 -27 192 306 153 14 chr1 30690249 30690321 -211974032 - MIR SINE MIR -153 109 28 1006 183 277 0 chr1 30690331 30690566 -211973787 - AluSx SINE Alu -2 300 1 1274 70 0 120 chr1 30690631 30690831 -211973522 + AluY SINE Alu 1 176 -135 507 267 75 19 chr1 30690833 30690994 -211973359 - MIR SINE MIR -71 191 22 260 226 108 39 chr1 30691006 30691108 -211973245 + MIR SINE MIR 112 220 -42 948 60 90 8 chr1 30691137 30691270 -211973083 + AluY SINE Alu 157 300 -11 314 142 0 3 chr1 30691282 30691508 -211972845 + AluSq SINE Alu 1 295 -7 1220 131 5 11 chr1 30691685 30691876 -211972477 - AluSg/x SINE Alu -1 311 122 2172 112 0 33 chr1 30691928 30692233 -211972120 + AluSq SINE Alu 1 295 -18 189 327 19 0 chr1 30692345 30692397 -211971956 - MER5A DNA MER1_type -91 98 46 344 320 0 0 chr1 30692442 30692520 -211971833 - L2 LINE L2 -61 3211 3134 2345 110 3 3 chr1 30692539 30692849 -211971504 - AluSx SINE Alu 0 312 3 839 250 109 25 chr1 30693187 30693471 -211970882 + LTR16A LTR ERVL 120 427 -23 289 261 0 0 chr1 30693485 30693554 -211970799 - MIR SINE MIR -57 151 83 222 135 37 6 chr1 30693672 30693725 -211970628 + MIR SINE MIR 63 118 -90 2593 74 0 10 chr1 30693961 30694273 -211970080 - AluSg SINE Alu 0 310 2 426 320 129 52 chr1 30694283 30694426 -211969927 - L2 LINE L2 -1 3271 3140 2084 126 27 3 chr1 30694426 30694720 -211969633 - AluSx SINE Alu -11 301 1 426 320 129 52 chr1 30694720 30695068 -211969285 - L2 LINE L2 -132 3140 2735 1729 135 71 24 chr1 30695180 30695477 -211968876 - AluJo SINE Alu -1 311 1 2004 122 31 3 chr1 30695537 30695825 -211968528 - AluSq SINE Alu -16 297 2 2254 90 7 0 chr1 30695826 30696114 -211968239 - AluSp SINE Alu -6 307 18 2292 98 0 20 chr1 30696117 30696423 -211967930 - AluSg SINE Alu -10 300 1 2312 109 0 0 chr1 30696423 30696726 -211967627 - AluSx SINE Alu -9 303 1 520 262 6 49 chr1 30696829 30696993 -211967360 + L2 LINE L2 3154 3310 -3 197 299 26 134 chr1 30697163 30697338 -211967015 + MIR SINE MIR 20 174 -88 2144 132 0 3 chr1 30697338 30697634 -211966719 + AluSx SINE Alu 2 296 -16 197 299 26 134 chr1 30697634 30697652 -211966701 + MIR SINE MIR 174 192 -70 183 152 61 0 chr1 30697776 30697809 -211966544 + MIR SINE MIR 118 152 -56 301 173 107 40 chr1 30698000 30698075 -211966278 + L2 LINE L2 3182 3261 -11 1779 141 18 18 chr1 30698138 30698422 -211965931 + AluJb SINE Alu 1 284 -28 371 82 0 16 chr1 30698429 30698474 -211965879 + (TA)n Simple_repeat Simple_repeat 2 47 -14 2533 61 0 0 chr1 30698474 30698768 -211965585 - AluY SINE Alu -17 294 1 371 82 0 16 chr1 30698768 30698783 -211965570 + (TA)n Simple_repeat Simple_repeat 47 61 0 212 281 181 44 chr1 30698785 30698945 -211965408 - MIR SINE MIR -14 248 67 272 225 77 115 chr1 30699013 30699173 -211965180 + MIR SINE MIR 45 203 -59 34 0 0 0 chr1 30699178 30699212 -211965141 + AT_rich Low_complexity Low_complexity 1 34 0 2041 128 21 0 chr1 30699277 30699566 -211964787 - AluSx SINE Alu -17 295 1 248 221 103 0 chr1 30699610 30699678 -211964675 - L2 LINE L2 -186 3086 3012 344 251 145 92 chr1 30699846 30699875 -211964478 - L1ME1 LINE L1 -14 6152 6126 2191 97 7 7 chr1 30699875 30700173 -211964180 - AluSx SINE Alu -14 298 1 344 251 145 92 chr1 30700173 30700350 -211964003 - L1ME1 LINE L1 -40 6126 5935 1453 198 6 61 chr1 30700627 30700756 -211963597 + AluSp SINE Alu 4 138 -175 2028 84 23 4 chr1 30700756 30701017 -211963336 + AluSp SINE Alu 34 299 -14 2532 28 0 7 chr1 30701025 30701311 -211963042 + AluYb8 SINE Alu 35 318 0 1453 198 6 61 chr1 30701311 30701485 -211962868 + AluSp SINE Alu 145 299 -14 1010 197 0 5 chr1 30701580 30701768 -211962585 - AluJb SINE Alu -8 304 118 917 186 16 0 chr1 30701768 30701956 -211962397 - L1ME1 LINE L1 -278 5888 5698 839 159 7 40 chr1 30701965 30702116 -211962237 - AluJo SINE Alu -166 146 1 349 129 2 0 chr1 30702118 30702174 -211962179 - L1ME1 LINE L1 -643 5525 5470 683 244 111 49 chr1 30702190 30702350 -211962003 + MIR SINE MIR 12 191 -71 1061 193 63 5 chr1 30702350 30702557 -211961796 + MER20 DNA MER1_type 1 219 0 683 244 111 49 chr1 30702557 30702621 -211961732 + MIR SINE MIR 191 250 -12 180 210 86 37 chr1 30703024 30703105 -211961248 - L2 LINE L2 -340 2973 2889 290 258 82 0 chr1 30703246 30703343 -211961010 + MIR SINE MIR 11 115 -147 438 264 16 32 chr1 30703387 30703512 -211960841 - MIR SINE MIR -75 187 65 196 352 45 34 chr1 30703515 30703603 -211960750 - L2 LINE L2 -47 3225 3137 2264 92 0 0 chr1 30703666 30703989 -211960364 + AluSc SINE Alu 1 323 0 180 315 108 36 chr1 30704042 30704153 -211960200 - L2 LINE L2 -214 3058 2940 2287 125 0 0 chr1 30704285 30704590 -211959763 + AluSq SINE Alu 2 306 -7 512 236 29 7 chr1 30704592 30704732 -211959621 + MLT1K LTR MaLR 446 588 0 1737 100 0 0 chr1 30704887 30705107 -211959246 + AluJb SINE Alu 1 220 -92 1003 198 42 28 chr1 30705107 30705319 -211959034 + AluJb SINE Alu 86 300 -12 1474 134 79 8 chr1 30705420 30705674 -211958679 - AluJb SINE Alu 0 312 41 211 211 0 0 chr1 30705730 30705782 -211958571 + A-rich Low_complexity Low_complexity 1 52 0 692 182 0 0 chr1 30705806 30705916 -211958437 + FLAM_A SINE Alu 10 119 -23 30 0 0 0 chr1 30705916 30705946 -211958407 + AT_rich Low_complexity Low_complexity 1 30 0 381 250 143 7 chr1 30706087 30706227 -211958126 + MLT1L LTR MaLR 140 298 -317 2073 123 0 10 chr1 30706228 30706528 -211957825 + AluSg SINE Alu 2 298 -12 1857 128 43 26 chr1 30706532 30706868 -211957485 + AluSx SINE Alu 1 341 0 2160 97 0 4 chr1 30706874 30707152 -211957201 + AluSx SINE Alu 21 297 -15 1326 141 8 4 chr1 30707156 30707397 -211956956 + L1MB8 LINE L1 5726 5967 -211 1296 133 63 133 chr1 30707402 30707719 -211956634 - AluJo SINE Alu -7 305 11 648 198 0 60 chr1 30707719 30707886 -211956467 + L1MB8 LINE L1 5959 6115 -63 289 173 0 0 chr1 30707894 30707946 -211956407 - L1MA10 LINE L1 -29 6305 6254 312 121 30 0 chr1 30707948 30708014 -211956339 + L1MB7 LINE L1 6117 6184 0 389 305 17 0 chr1 30708157 30708275 -211956078 + MLT1L LTR MaLR 432 551 -64 926 195 0 0 chr1 30708359 30708508 -211955845 - FRAM SINE Alu -32 144 1 676 165 66 26 chr1 30708508 30708523 -211955830 - L1MB5 LINE L1 -30 6150 6137 1593 179 47 0 chr1 30708523 30708802 -211955551 + AluJo SINE Alu 1 292 -20 676 165 66 26 chr1 30708802 30708926 -211955427 - L1MB5 LINE L1 -43 6137 6019 2256 126 3 0 chr1 30708926 30709236 -211955117 - AluSx SINE Alu -1 311 1 676 165 66 26 chr1 30709236 30709572 -211954781 - L1MB5 LINE L1 -161 6019 5565 1833 115 66 17 chr1 30709572 30709859 -211954494 - AluSx SINE Alu -11 301 1 676 165 66 26 chr1 30709859 30710008 -211954345 - L1MB5 LINE L1 -615 5565 5423 310 222 165 125 chr1 30710124 30710300 -211954053 - MIR SINE MIR 0 262 80 372 132 0 0 chr1 30710325 30710393 -211953960 - L1MD2 LINE L1 0 6359 6292 1820 153 11 7 chr1 30710393 30710680 -211953673 + AluJo SINE Alu 1 288 -24 276 100 0 0 chr1 30710680 30710720 -211953633 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 3007 152 19 29 chr1 30710720 30711067 -211953286 - L1MD1 LINE L1 -63 6179 5839 2044 153 0 6 chr1 30711067 30711380 -211952973 - AluJb SINE Alu -1 311 1 3007 152 19 29 chr1 30711380 30711617 -211952736 - L1MD1 LINE L1 -403 5839 5601 1584 98 18 0 chr1 30711619 30711843 -211952510 - AluSq SINE Alu -5 308 81 1688 58 0 0 chr1 30711944 30712134 -211952219 + AluY SINE Alu 107 296 -15 2247 112 10 0 chr1 30712217 30712512 -211951841 + AluSx SINE Alu 5 302 -10 1093 186 6 0 chr1 30712930 30713113 -211951240 + AluJb SINE Alu 1 184 -128 966 125 69 0 chr1 30713113 30713257 -211951096 + AluSq SINE Alu 93 246 -67 249 33 0 0 chr1 30713261 30713291 -211951062 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 2013 113 62 0 chr1 30713348 30713639 -211950714 - AluSp SINE Alu -4 309 1 2790 89 12 147 chr1 30713639 30714010 -211950343 - Tigger1 DNA MER2_type -324 2094 1675 2222 115 6 10 chr1 30714010 30714345 -211950008 + AluSq SINE Alu 1 313 0 2790 89 12 147 chr1 30714345 30714424 -211949929 - Tigger1 DNA MER2_type -743 1675 1738 1627 134 0 0 chr1 30714424 30714655 -211949698 - AluSg/x SINE Alu -1 311 81 2790 89 12 147 chr1 30714655 30714790 -211949563 - Tigger1 DNA MER2_type -679 1739 1587 2316 104 3 0 chr1 30714791 30715089 -211949264 - AluSx SINE Alu -13 299 1 4442 115 8 39 chr1 30715089 30715256 -211949097 - Tigger1 DNA MER2_type -1207 1211 1040 2249 105 3 7 chr1 30715256 30715560 -211948793 - AluSc SINE Alu -6 303 1 4442 115 8 39 chr1 30715560 30716029 -211948324 - Tigger1 DNA MER2_type -1378 1040 558 2922 10 0 0 chr1 30716029 30716339 -211948014 + AluYb8 SINE Alu 1 310 -8 2379 78 14 3 chr1 30716347 30716643 -211947710 + AluSg SINE Alu 1 299 -11 4442 115 8 39 chr1 30716643 30716772 -211947581 - Tigger1 DNA MER2_type -1867 551 460 1600 142 3 115 chr1 30716774 30716908 -211947445 + AluJo SINE Alu 2 149 -153 2170 93 0 59 chr1 30716908 30717230 -211947123 + AluSg SINE Alu 1 303 -7 1600 142 3 115 chr1 30717230 30717342 -211947011 + AluJo SINE Alu 149 202 -100 207 0 0 0 chr1 30717342 30717365 -211946988 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1600 142 3 115 chr1 30717365 30717456 -211946897 + AluJo SINE Alu 202 302 0 275 208 0 0 chr1 30717456 30717509 -211946844 - Tigger1 DNA MER2_type -2363 55 3 2189 84 10 32 chr1 30717509 30717818 -211946535 + AluSc SINE Alu 1 302 -7 183 361 0 0 chr1 30717869 30717941 -211946412 - L3b LINE CR1 -294 1289 1218 1384 170 116 33 chr1 30717984 30718260 -211946093 - AluJo SINE Alu -13 299 1 2318 107 7 0 chr1 30718265 30718563 -211945790 - AluSx SINE Alu -12 300 1 1991 132 0 74 chr1 30718563 30718888 -211945465 - AluJb SINE Alu -11 301 1 534 268 32 6 chr1 30718982 30719139 -211945214 - MIR SINE MIR -58 204 44 369 225 0 12 chr1 30719449 30719529 -211944824 - L2 LINE L2 -1 3271 3193 210 344 154 41 chr1 30720249 30720404 -211943949 + MIR3 SINE MIR 19 169 -39 354 312 45 32 chr1 30720776 30720930 -211943423 - MIR3 SINE MIR -7 201 46 293 276 76 9 chr1 30721172 30721277 -211943076 + MIR SINE MIR 19 130 -78 819 119 66 40 chr1 30721286 30721437 -211942916 - FRAM SINE Alu -1 175 21 315 250 95 17 chr1 30721450 30721566 -211942787 + MIR SINE MIR 134 258 -4 1270 77 0 49 chr1 30722073 30722089 -211942264 + AluSq SINE Alu 108 123 -190 1245 46 17 6 chr1 30722089 30722262 -211942091 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1270 77 0 49 chr1 30722262 30722428 -211941925 + AluSq SINE Alu 123 281 -32 213 39 0 0 chr1 30722428 30722454 -211941899 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 293 313 67 20 chr1 30722640 30722835 -211941518 + L1MC4a LINE L1 5692 5895 -1913 353 186 199 62 chr1 30723128 30723419 -211940934 - L1ME4a LINE L1 -185 5936 5606 744 151 50 0 chr1 30723433 30723552 -211940801 - FLAM_A SINE Alu -4 129 5 2461 60 3 17 chr1 30723569 30723891 -211940462 + AluSp SINE Alu 1 313 0 367 40 0 0 chr1 30723915 30723965 -211940388 - AluY SINE Alu -6 296 247 2358 88 0 3 chr1 30724065 30724359 -211939994 + AluSx SINE Alu 12 304 -8 264 30 0 0 chr1 30724509 30724542 -211939811 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 687 209 22 9 chr1 30724937 30725090 -211939263 + MIR SINE MIR 6 151 -62 1106 178 5 20 chr1 30725090 30725287 -211939066 + AluJo SINE Alu 87 280 -32 299 25 25 0 chr1 30725287 30725327 -211939026 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 211 280 13 27 chr1 30725327 30725402 -211938951 + MIR SINE MIR 143 216 -46 2335 99 3 6 chr1 30725413 30725727 -211938626 + AluSp SINE Alu 1 313 0 1496 131 26 137 chr1 30725729 30726044 -211938309 + AluYb8 SINE Alu 1 275 -43 2045 99 19 26 chr1 30726044 30726357 -211937996 - AluY SINE Alu 0 311 1 1496 131 26 137 chr1 30726357 30726392 -211937961 + AluYb8 SINE Alu 275 312 -6 2217 100 3 17 chr1 30726398 30726699 -211937654 + AluSp SINE Alu 1 297 -16 1129 150 68 14 chr1 30726836 30727128 -211937225 - L1MB8 LINE L1 0 6178 5777 2182 109 0 3 chr1 30727162 30727469 -211936884 + AluY SINE Alu 1 306 0 318 179 0 0 chr1 30727477 30727533 -211936820 + AluJ/FRAM SINE Alu 232 287 -15 1814 173 7 17 chr1 30727546 30727847 -211936506 + AluSq SINE Alu 3 300 -13 1957 199 82 27 chr1 30727881 30728359 -211935994 - MLT1D LTR MaLR 0 505 2 2406 72 0 0 chr1 30728383 30728696 -211935657 + AluSc SINE Alu 1 313 0 2137 140 3 9 chr1 30729026 30729161 -211935192 + AluSq SINE Alu 1 135 -178 2404 97 0 0 chr1 30729161 30729460 -211934893 + AluSx SINE Alu 1 299 -13 2137 140 3 9 chr1 30729460 30729639 -211934714 + AluSq SINE Alu 135 313 0 2382 69 3 7 chr1 30730041 30730332 -211934021 + AluSp SINE Alu 1 290 -23 754 176 26 39 chr1 30730332 30730485 -211933868 - FRAM SINE Alu -30 146 1 2616 65 0 0 chr1 30730635 30730943 -211933410 - AluY SINE Alu -3 308 1 1181 38 0 0 chr1 30730947 30731078 -211933275 - AluYb8 SINE Alu -187 131 1 2445 86 6 10 chr1 30731165 30731479 -211932874 - AluSq SINE Alu 0 313 1 1841 169 23 13 chr1 30731604 30731911 -211932442 + AluJb SINE Alu 1 310 -2 395 307 0 60 chr1 30731917 30732067 -211932286 - MIR SINE MIR -120 142 2 199 275 14 58 chr1 30732165 30732234 -211932119 - L3 LINE CR1 -1414 163 98 182 138 35 0 chr1 30732575 30732604 -211931749 + MIR SINE MIR 117 146 -116 638 294 33 5 chr1 30732628 30732812 -211931541 - MIR SINE MIR -52 210 22 253 259 37 148 chr1 30732824 30733013 -211931340 + MIR3 SINE MIR 40 207 -1 2123 52 45 4 chr1 30733137 30733406 -211930947 - AluY SINE Alu -6 305 26 193 226 57 19 chr1 30733441 30733494 -211930859 + MIR SINE MIR 105 159 -103 1933 117 10 3 chr1 30734004 30734294 -211930059 - AluSx SINE Alu -20 292 1 2104 71 0 52 chr1 30734317 30734512 -211929841 - AluSx SINE Alu 0 312 108 198 71 0 0 chr1 30734512 30734540 -211929813 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2001 115 0 3 chr1 30734540 30734826 -211929527 - AluSq SINE Alu -28 285 1 2104 71 0 52 chr1 30734826 30734968 -211929385 - AluSx SINE Alu -202 110 2 1710 174 0 14 chr1 30734971 30735264 -211929089 - AluJb SINE Alu -19 293 5 1480 137 4 8 chr1 30735333 30735567 -211928786 - AluJo SINE Alu -13 299 67 1884 116 0 4 chr1 30735567 30735835 -211928518 + AluSx SINE Alu 1 267 -45 207 0 0 0 chr1 30735840 30735863 -211928490 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 237 175 222 0 chr1 30735866 30735929 -211928424 - AluJo SINE Alu -225 77 1 1318 157 40 95 chr1 30736341 30736531 -211927822 + AluJb SINE Alu 1 167 -145 2241 98 0 16 chr1 30736531 30736848 -211927505 - AluSx SINE Alu 0 312 1 1318 157 40 95 chr1 30736848 30736982 -211927371 + AluJb SINE Alu 167 307 -5 1063 207 6 78 chr1 30737069 30737115 -211927238 - L1ME2 LINE L1 -9 6155 6107 2192 116 0 0 chr1 30737115 30737425 -211926928 + AluSq SINE Alu 1 310 -3 1063 207 6 78 chr1 30737425 30737697 -211926656 - L1ME2 LINE L1 -57 6107 5860 935 164 0 0 chr1 30737701 30737853 -211926500 - FRAM SINE Alu -25 151 1 530 172 66 0 chr1 30737854 30737976 -211926377 - L1ME2 LINE L1 -306 5858 5729 2255 92 3 0 chr1 30737976 30738279 -211926074 - AluSg SINE Alu 0 310 7 2242 77 10 0 chr1 30738283 30738580 -211925773 - AluSp SINE Alu -13 300 1 974 150 50 0 chr1 30738666 30738826 -211925527 + AluJb SINE Alu 137 304 -8 800 126 0 0 chr1 30738825 30738944 -211925409 + AluSg/x SINE Alu 185 303 -9 * 319 302 8 95 chr1 30739165 30739291 -211925062 + L2 LINE L2 3172 3286 -27 1774 163 10 0 chr1 30739372 30739672 -211924681 - AluJo SINE Alu -7 305 3 285 279 21 107 chr1 30739915 30739996 -211924357 + MIR SINE MIR 121 187 -75 2134 110 3 3 chr1 30739996 30740296 -211924057 + AluSx SINE Alu 1 300 -12 285 279 21 107 chr1 30740296 30740354 -211923999 + MIR SINE MIR 187 248 -14 189 0 0 0 chr1 30741032 30741053 -211923300 + (TA)n Simple_repeat Simple_repeat 2 22 0 2084 125 0 0 chr1 30741191 30741494 -211922859 - AluSx SINE Alu -9 303 1 638 285 27 5 chr1 30741511 30741697 -211922656 - L3 LINE CR1 -108 1469 1280 265 188 21 0 chr1 30741705 30741753 -211922600 + MLT1A1 LTR MaLR 1 49 -325 1221 219 72 7 chr1 30741821 30742113 -211922240 + MLT1A1 LTR MaLR 44 354 -11 403 215 237 7 chr1 30742144 30742279 -211922074 + MIR SINE MIR 31 196 -66 258 191 83 60 chr1 30742349 30742433 -211921920 - L3 LINE CR1 -313 1264 1179 514 135 98 55 chr1 30742596 30742649 -211921704 - Charlie5 DNA MER1_type 0 2624 2575 1417 166 40 22 chr1 30742649 30742956 -211921397 + AluSx SINE Alu 1 312 0 514 135 98 55 chr1 30742956 30742980 -211921373 - Charlie5 DNA MER1_type -49 2575 2553 1998 128 0 7 chr1 30742980 30743307 -211921046 + AluSx SINE Alu 1 312 0 514 135 98 55 chr1 30743307 30743389 -211920964 - Charlie5 DNA MER1_type -71 2553 2455 805 148 0 0 chr1 30743406 30743534 -211920819 + FLAM_C SINE Alu 12 139 -4 1999 102 4 0 chr1 30743540 30743814 -211920539 + AluSx SINE Alu 1 275 -37 377 276 0 41 chr1 30743815 30743913 -211920440 + L1MC4 LINE L1 6610 6703 -1339 321 344 0 0 chr1 30743850 30743943 -211920410 - L1MC4 LINE L1 -1336 6706 6614 * 1130 68 7 0 chr1 30744095 30744242 -211920111 + AluSg/x SINE Alu 154 301 -11 2311 61 24 0 chr1 30744242 30744535 -211919818 + AluY SINE Alu 1 300 -11 820 144 0 16 chr1 30744567 30744727 -211919626 + FLAM_C SINE Alu 2 159 0 717 260 42 10 chr1 30744728 30744920 -211919433 - MIR SINE MIR -16 246 49 441 263 171 44 chr1 30745261 30745512 -211918841 + L2 LINE L2 2127 2409 -905 946 127 0 69 chr1 30745617 30745773 -211918580 - AluSg/x SINE Alu -32 280 136 2261 82 7 0 chr1 30745773 30746076 -211918277 - AluY SINE Alu -6 305 1 946 127 0 69 chr1 30746076 30746092 -211918261 - AluSg/x SINE Alu -176 136 120 1885 146 0 3 chr1 30746151 30746453 -211917900 - AluJb SINE Alu -11 301 1 2239 85 0 0 chr1 30746592 30746886 -211917467 - AluSx SINE Alu -18 294 1 2424 42 3 7 chr1 30747459 30747766 -211916587 - AluSp SINE Alu -7 306 1 686 121 163 28 chr1 30747795 30747936 -211916417 + FRAM SINE Alu 1 158 -18 350 246 91 64 chr1 30747959 30748069 -211916284 + MIR SINE MIR 35 147 -61 2167 91 0 16 chr1 30748166 30748475 -211915878 + AluSq SINE Alu 1 304 -9 259 209 9 124 chr1 30748482 30748587 -211915766 - MIR SINE MIR -62 146 54 204 228 167 79 chr1 30748580 30748694 -211915659 + L2 LINE L2 3190 3313 0 * 452 182 11 155 chr1 30749053 30749089 -211915264 - L1MB2 LINE L1 -1 6167 6127 2360 60 0 7 chr1 30749089 30749387 -211914966 + AluY SINE Alu 1 296 -15 452 182 11 155 chr1 30749387 30749508 -211914845 - L1MB2 LINE L1 -41 6127 6082 1683 172 0 23 chr1 30749508 30749810 -211914543 - AluSx SINE Alu -17 295 1 452 182 11 155 chr1 30749810 30749928 -211914425 - L1MB2 LINE L1 -86 6082 5949 2041 126 3 0 chr1 30749928 30750221 -211914132 - AluSx SINE Alu -18 294 1 1441 195 14 3 chr1 30750322 30750604 -211913749 + AluJo SINE Alu 14 298 -14 2581 265 120 29 chr1 30750604 30751686 -211912667 - L2 LINE L2 -184 3129 1937 2261 73 0 3 chr1 30751757 30752044 -211912309 + AluSc SINE Alu 1 286 -23 274 237 86 0 chr1 30752049 30752142 -211912211 + MER113 DNA MER1_type? 139 239 -282 625 143 171 0 chr1 30752143 30752248 -211912105 + FLAM_C SINE Alu 2 124 -19 393 205 36 0 chr1 30752249 30752332 -211912021 + MER113 DNA MER1_type? 207 292 -229 2250 110 0 0 chr1 30753208 30753518 -211910835 - AluSg SINE Alu 0 310 1 2090 111 3 0 chr1 30753719 30754016 -211910337 + AluSq SINE Alu 1 298 -15 22 80 0 0 chr1 30754392 30754442 -211909911 + AT_rich Low_complexity Low_complexity 1 50 0 1243 100 9 74 chr1 30754540 30754708 -211909645 - AluSq SINE Alu -15 298 147 2053 44 93 0 chr1 30754708 30754978 -211909375 - AluY SINE Alu -16 295 1 1243 100 9 74 chr1 30754978 30755038 -211909315 - AluSq SINE Alu -166 147 85 2244 79 7 0 chr1 30755213 30755518 -211908835 + AluY SINE Alu 1 307 -4 588 85 181 0 chr1 30755518 30755612 -211908741 - AluSp SINE Alu -201 112 2 337 290 48 3 chr1 30755638 30755784 -211908569 - MIR SINE MIR -14 248 53 793 110 0 0 chr1 30755912 30756021 -211908332 - AluSx SINE Alu -10 299 191 1082 99 0 0 chr1 30756022 30756163 -211908190 - AluSx SINE Alu -171 141 1 23 0 0 0 chr1 30756275 30756298 -211908055 + AT_rich Low_complexity Low_complexity 1 23 0 1116 129 0 0 chr1 30756300 30756463 -211907890 - AluSg/x SINE Alu -20 292 130 2182 103 3 0 chr1 30756465 30756765 -211907588 - AluSq SINE Alu -12 301 1 557 230 35 137 chr1 30756770 30756879 -211907474 - MIR SINE MIR -50 212 136 1728 163 0 7 chr1 30756879 30757167 -211907186 - AluJb SINE Alu -15 297 12 557 230 35 137 chr1 30757167 30757283 -211907070 - MIR SINE MIR -126 136 10 1479 169 36 26 chr1 30757338 30757646 -211906707 + AluJo SINE Alu 2 312 0 2098 119 16 0 chr1 30757649 30757952 -211906401 + AluSx SINE Alu 1 308 -4 1884 133 3 20 chr1 30758038 30758339 -211906014 + AluSx SINE Alu 1 296 -16 2235 99 10 0 chr1 30758339 30758641 -211905712 + AluSp SINE Alu 1 305 -8 637 280 96 49 chr1 30758645 30759154 -211905199 - L1ME LINE L1 -544 5626 5059 1938 137 0 3 chr1 30759154 30759447 -211904906 - AluSx SINE Alu -19 293 2 637 280 96 49 chr1 30759447 30759782 -211904571 - L1ME LINE L1 -1111 5059 4741 1464 215 0 13 chr1 30759896 30760194 -211904159 + AluJb SINE Alu 3 296 -16 225 248 51 34 chr1 30760215 30760332 -211904021 - L1ME LINE L1 -1479 4667 4549 466 256 167 21 chr1 30760336 30760475 -211903878 + L2 LINE L2 2960 3077 -236 2116 130 0 0 chr1 30760475 30760783 -211903570 - AluSx SINE Alu -4 308 1 2323 63 27 0 chr1 30760789 30761090 -211903263 - AluY SINE Alu -2 309 1 466 256 167 21 chr1 30761090 30761121 -211903232 + L2 LINE L2 3081 3106 -207 2223 107 3 0 chr1 30761121 30761429 -211902924 - AluSp SINE Alu -4 309 1 466 256 167 21 chr1 30761429 30761484 -211902869 + L2 LINE L2 3106 3227 -86 718 254 116 13 chr1 30761487 30761711 -211902642 + MIR SINE MIR 3 249 -13 185 333 58 0 chr1 30761784 30761853 -211902500 + L2 LINE L2 3241 3313 0 2308 93 0 6 chr1 30762022 30762333 -211902020 - AluSx SINE Alu -3 309 1 1487 138 27 74 chr1 30762338 30762664 -211901689 - AluSx SINE Alu 0 312 1 2294 75 0 0 chr1 30762884 30763178 -211901175 + AluY SINE Alu 1 294 -17 274 263 20 20 chr1 30763290 30763389 -211900964 + L1ME4a LINE L1 5644 5742 -379 951 172 0 0 chr1 30763393 30763556 -211900797 - AluJb SINE Alu -8 304 142 363 260 102 39 chr1 30763561 30763688 -211900665 + L1ME4a LINE L1 5732 5866 -255 751 261 21 5 chr1 30763692 30763880 -211900473 + MIR SINE MIR 72 262 0 1668 176 0 3 chr1 30763983 30764273 -211900080 + AluSx SINE Alu 12 300 -12 1826 71 0 4 chr1 30764490 30764729 -211899624 - AluSx SINE Alu -11 301 64 241 293 26 52 chr1 30764875 30764991 -211899362 - MARNA DNA Mariner -12 574 462 665 171 9 0 chr1 30765121 30765226 -211899127 - FLAM_C SINE Alu -36 107 2 2033 99 3 13 chr1 30765238 30765540 -211898813 - AluSq SINE Alu -14 299 1 2371 76 0 3 chr1 30765585 30765889 -211898464 + AluSg1 SINE Alu 1 303 -6 335 194 0 0 chr1 30765892 30765954 -211898399 + L1ME LINE L1 5757 5818 -303 488 193 21 135 chr1 30765966 30766027 -211898326 + LTR38 LTR ERV1 3 69 -487 2160 113 0 0 chr1 30766027 30766329 -211898024 - AluSq SINE Alu -11 302 1 488 193 21 135 chr1 30766329 30766459 -211897894 + LTR38 LTR ERV1 69 172 -384 822 97 35 0 chr1 30766462 30766576 -211897777 + AluSg SINE Alu 3 120 -190 1289 84 0 17 chr1 30766701 30766879 -211897474 + AluSg/x SINE Alu 132 306 -6 983 241 50 44 chr1 30766883 30767202 -211897151 + LTR38 LTR ERV1 162 482 -74 666 108 0 2 chr1 30767203 30767435 -211896918 + AluSx SINE Alu 1 283 -29 23 33 0 0 chr1 30767438 30767468 -211896885 + AT_rich Low_complexity Low_complexity 1 30 0 745 161 48 0 chr1 30767474 30767598 -211896755 + AluJo/FLAM SINE Alu 1 130 -172 1858 148 16 7 chr1 30767598 30767901 -211896452 + AluJo SINE Alu 1 306 -6 648 123 8 41 chr1 30768002 30768124 -211896229 + AluJb SINE Alu 17 134 -178 2388 63 10 3 chr1 30768184 30768487 -211895866 - AluSp SINE Alu -8 305 1 491 149 0 0 chr1 30768525 30768599 -211895754 - AluJ SINE Alu -28 284 211 1627 97 0 29 chr1 30768599 30768837 -211895516 + AluSp SINE Alu 64 294 -19 1131 182 5 5 chr1 30768899 30769108 -211895245 - AluJ SINE Alu -103 209 1 2027 99 0 24 chr1 30769174 30769467 -211894886 - AluSp SINE Alu -19 294 9 319 291 68 0 chr1 30769480 30769583 -211894770 - L1MC5 LINE L1 -365 7596 7487 2013 92 32 3 chr1 30769713 30769996 -211894357 - AluSg SINE Alu -19 291 1 2056 119 0 0 chr1 30769996 30770291 -211894062 - AluY SINE Alu -16 295 1 1667 226 58 66 chr1 30770294 30770520 -211893833 - HAL1 LINE L1 -695 1812 1586 2435 43 20 0 chr1 30770520 30770825 -211893528 - AluY SINE Alu 0 311 1 1667 226 58 66 chr1 30770825 30771146 -211893207 - HAL1 LINE L1 -921 1586 1269 2016 88 28 3 chr1 30771149 30771434 -211892919 - AluSq SINE Alu -21 292 1 30 0 0 0 chr1 30771434 30771464 -211892889 + AT_rich Low_complexity Low_complexity 1 30 0 2220 90 3 3 chr1 30771766 30772066 -211892287 + AluSx SINE Alu 1 300 -12 313 248 54 94 chr1 30772085 30772234 -211892119 + MIR SINE MIR 119 261 -1 1772 126 7 40 chr1 30772241 30772543 -211891810 - AluSx SINE Alu -20 292 1 180 309 0 0 chr1 30772567 30772609 -211891744 + MIR SINE MIR 203 244 -18 301 211 0 0 chr1 30772767 30772819 -211891534 + L2 LINE L2 3213 3264 -8 465 275 119 38 chr1 30773040 30773200 -211891153 + MIR SINE MIR 12 184 -78 183 250 23 0 chr1 30773200 30773244 -211891109 + L2 LINE L2 2931 2975 -339 270 0 0 0 chr1 30773273 30773303 -211891050 + (TG)n Simple_repeat Simple_repeat 1 30 0 201 39 0 0 chr1 30773302 30773328 -211891025 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1072 138 0 0 chr1 30773328 30773487 -211890866 - AluSg/x SINE Alu -34 276 118 2154 109 0 6 chr1 30773506 30773818 -211890535 - AluSx SINE Alu -2 310 1 390 319 79 55 chr1 30773825 30773959 -211890394 + L2 LINE L2 2980 3109 -163 2065 117 0 13 chr1 30773959 30774275 -211890078 - AluSx SINE Alu 0 312 1 390 319 79 55 chr1 30774275 30774394 -211889959 + L2 LINE L2 3109 3239 -33 385 333 77 13 chr1 30774946 30775180 -211889173 + L2 LINE L2 2836 3084 -188 2225 89 0 10 chr1 30775232 30775561 -211888792 - AluSx SINE Alu 0 312 1 396 356 6 11 chr1 30775725 30775905 -211888448 + T-rich Low_complexity Low_complexity 1 179 0 * 415 305 10 53 chr1 30775790 30776213 -211888140 + CT-rich Low_complexity Low_complexity 1 405 0 1931 109 6 32 chr1 30776469 30776780 -211887573 + AluSx SINE Alu 1 303 -9 2233 58 0 64 chr1 30776792 30776917 -211887436 + AluY SINE Alu 5 136 -230 2412 54 0 10 chr1 30776917 30777231 -211887122 + AluY SINE Alu 1 311 0 2233 58 0 64 chr1 30777231 30777488 -211886865 + AluY SINE Alu 136 366 0 1913 116 0 17 chr1 30777501 30777794 -211886559 - AluJb SINE Alu -24 288 1 2146 71 4 0 chr1 30777796 30778077 -211886276 - AluSp SINE Alu -30 283 2 246 289 252 0 chr1 30778077 30778212 -211886141 - Charlie8 DNA MER1_type -2248 169 1 336 267 308 7 chr1 30778275 30778421 -211885932 - MIR SINE MIR -12 250 61 841 240 19 96 chr1 30778560 30778721 -211885632 - MIR SINE MIR 0 262 129 1931 95 78 3 chr1 30778721 30779004 -211885349 + AluSq SINE Alu 2 305 -8 841 240 19 96 chr1 30779004 30779113 -211885240 - MIR SINE MIR -133 129 13 1320 161 10 77 chr1 30779514 30779776 -211884577 - AluJo SINE Alu -3 309 68 2222 82 3 0 chr1 30779776 30780070 -211884283 + AluY SINE Alu 1 295 -16 1320 161 10 77 chr1 30780070 30780105 -211884248 - AluJo SINE Alu -244 68 32 2231 95 0 7 chr1 30780199 30780503 -211883850 + AluSq SINE Alu 1 302 -11 1782 147 3 7 chr1 30780637 30780923 -211883430 + AluJb SINE Alu 1 285 -27 413 140 0 0 chr1 30780961 30781018 -211883335 + AluS SINE Alu 2 58 -260 231 188 0 59 chr1 30981018 30981119 -211683234 + C-rich Low_complexity Low_complexity 4 98 0 1624 104 0 30 chr1 30981570 30981801 -211682552 + AluSg/x SINE Alu 88 311 -1 1449 175 62 0 chr1 30981802 30982093 -211682260 + MER41C LTR ERV1 246 554 0 21 0 0 0 chr1 30982190 30982211 -211682142 + GC_rich Low_complexity Low_complexity 1 21 0 226 260 47 64 chr1 30982243 30982478 -211681875 - L2 LINE L2 -227 3045 2815 327 301 122 13 chr1 30982533 30982689 -211681664 - MIR SINE MIR -4 258 86 215 279 23 101 chr1 30982798 30982927 -211681426 - L2 LINE L2 -94 3219 3101 661 247 40 6 chr1 30983558 30983732 -211680621 + MIR SINE MIR 59 238 -24 241 295 70 0 chr1 30985202 30985331 -211679022 + L2 LINE L2 2836 2973 -299 210 335 53 41 chr1 30985719 30985889 -211678464 - MIR3 SINE MIR -7 201 30 339 323 22 62 chr1 30986030 30986256 -211678097 - MIR SINE MIR -40 222 6 283 309 85 48 chr1 30986530 30986718 -211677635 + MIR SINE MIR 1 195 -67 * 311 250 0 12 chr1 30986715 30986795 -211677558 - MIR SINE MIR -126 136 58 340 246 25 57 chr1 30986804 30986865 -211677488 + MIR SINE MIR 43 100 -162 2320 90 3 3 chr1 30986865 30987155 -211677198 - AluSg SINE Alu -20 290 1 340 246 25 57 chr1 30987155 30987215 -211677138 + MIR SINE MIR 100 160 -102 687 12 0 0 chr1 30987902 30987982 -211676371 + (AATAG)n Simple_repeat Simple_repeat 1 80 0 387 282 54 100 chr1 30988124 30988383 -211675970 - L2 LINE L2 -19 3253 3007 723 259 211 6 chr1 30988384 30988701 -211675652 + L2 LINE L2 2932 3313 0 252 228 0 0 chr1 30988718 30988775 -211675578 - FAM SINE Alu 0 179 123 386 271 31 0 chr1 30990505 30990634 -211673719 - Zaphod DNA AcHobo -10 4021 3889 723 261 44 26 chr1 30992417 30992643 -211671710 - MIR SINE MIR -27 235 6 362 244 47 58 chr1 30992646 30992818 -211671535 - L3 LINE CR1 -77 1500 1331 522 275 47 6 chr1 30993476 30993647 -211670706 - MIR SINE MIR -78 184 7 182 65 97 0 chr1 30993658 30993689 -211670664 - MIR3 SINE MIR -15 193 160 212 296 19 0 chr1 30993752 30993806 -211670547 + MER5B DNA MER1_type 1 55 -123 418 141 0 14 chr1 30993811 30993882 -211670471 - L1MD3 LINE L1 -1737 6258 6189 418 266 56 7 chr1 30993883 30994026 -211670327 + MIR SINE MIR 35 184 -78 350 221 18 145 chr1 30994035 30994200 -211670153 + MER5B DNA MER1_type 1 133 -45 6951 163 67 46 chr1 30994215 30995741 -211668612 + L1MC3 LINE L1 5486 7049 -736 478 0 32 0 chr1 30995741 30995803 -211668550 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 6951 163 67 46 chr1 30995803 30995856 -211668497 + L1MC3 LINE L1 7049 7099 -686 4010 205 47 15 chr1 30995852 30996828 -211667525 - L1MEc LINE L1 -2824 4117 3111 * 827 193 28 41 chr1 30996827 30996900 -211667453 - L1MEc LINE L1 -5594 1528 1456 * 1502 224 100 3 chr1 30996900 30997261 -211667092 - MSTD LTR MaLR 0 396 1 827 193 28 41 chr1 30997261 30997405 -211666948 - L1MEc LINE L1 -5666 1456 1314 870 310 57 6 chr1 30997420 30997752 -211666601 - L1MEc LINE L1 -6013 1109 761 199 182 327 0 chr1 30997784 30997839 -211666514 - MIR SINE MIR -55 153 81 325 280 102 0 chr1 30998719 30998837 -211665516 - L2 LINE L2 -5 3267 3138 1095 254 126 20 chr1 30999649 31000055 -211664298 - L1MEc LINE L1 -5956 467 19 332 191 0 59 chr1 31000159 31000227 -211664126 - L2 LINE L2 -1 3312 3249 330 253 30 20 chr1 31000269 31000368 -211663985 - MIR SINE MIR -73 135 36 812 311 63 31 chr1 31000529 31001017 -211663336 + L1ME4a LINE L1 5475 5978 -143 318 274 250 24 chr1 31001061 31001229 -211663124 - MIR SINE MIR -18 244 39 330 26 0 0 chr1 31002433 31002472 -211661881 + (TG)n Simple_repeat Simple_repeat 2 40 0 426 261 50 56 chr1 31002476 31002656 -211661697 - MIR SINE MIR -55 207 29 1234 345 48 20 chr1 31003194 31004138 -211660215 - ERVL LTR ERVL -628 5136 4167 854 229 91 5 chr1 31004324 31004534 -211659819 - MIR SINE MIR -18 244 17 463 284 82 58 chr1 31004771 31005014 -211659339 - L2 LINE L2 -17 3255 3007 243 296 88 40 chr1 31004996 31005121 -211659232 + L3 LINE CR1 1444 1574 -3 * 278 259 86 0 chr1 31005865 31005946 -211658407 + MIR SINE MIR 45 132 -76 621 286 108 0 chr1 31006068 31006271 -211658082 - MIR SINE MIR -35 227 3 2296 108 0 19 chr1 31006349 31006664 -211657689 - AluSx SINE Alu -3 309 1 393 269 8 31 chr1 31006719 31006849 -211657504 + L2 LINE L2 2919 3045 -227 2016 106 3 21 chr1 31007666 31007949 -211656404 + AluSp SINE Alu 1 278 -35 183 333 121 0 chr1 31008779 31008878 -211655475 + MIR SINE MIR 117 227 -35 233 143 20 61 chr1 31009066 31009115 -211655238 - MIR SINE MIR -55 153 107 506 284 71 36 chr1 31009115 31009340 -211655013 + MIR SINE MIR 4 236 -26 233 100 50 17 chr1 31009367 31009427 -211654926 + (TAA)n Simple_repeat Simple_repeat 3 64 0 2424 100 0 3 chr1 31009915 31010225 -211654128 + AluSg SINE Alu 1 309 -1 2345 102 0 3 chr1 31011299 31011604 -211652749 - AluSq SINE Alu -9 304 1 742 256 31 15 chr1 31011649 31011844 -211652509 + MIR3 SINE MIR 11 208 0 1542 129 209 12 chr1 31012834 31013160 -211651193 + MSTA LTR MaLR 1 390 -38 191 333 51 8 chr1 31013164 31013281 -211651072 - L2 LINE L2 -39 3233 3112 427 250 134 43 chr1 31013359 31013523 -211650830 - MIR SINE MIR -21 241 63 549 318 153 7 chr1 31013815 31014089 -211650264 + MLT1K LTR MaLR 86 399 -189 231 328 0 0 chr1 31014103 31014164 -211650189 + (TG)n Simple_repeat Simple_repeat 1 61 0 276 263 95 11 chr1 31014281 31014376 -211649977 + MLT1K LTR MaLR 447 549 -39 533 210 48 8 chr1 31014838 31014962 -211649391 - MIR SINE MIR -120 142 14 211 242 33 44 chr1 31015003 31015094 -211649259 - L2 LINE L2 -190 3082 2993 396 214 270 0 chr1 31016838 31016964 -211647389 + MER5A DNA MER1_type 9 168 -21 231 258 32 16 chr1 31017027 31017089 -211647264 + MIR SINE MIR 86 148 -114 * 364 290 40 32 chr1 31017088 31017212 -211647141 - L2 LINE L2 0 3272 3148 385 193 18 0 chr1 31017408 31017489 -211646864 - MIR SINE MIR -60 148 65 349 281 37 22 chr1 31017668 31017803 -211646550 + MIR SINE MIR 58 194 -68 287 336 122 17 chr1 31017835 31018180 -211646173 + L2 LINE L2 2928 3308 -5 494 233 139 67 chr1 31018202 31018587 -211645766 - MLT1J2 LTR MaLR 0 450 75 335 188 0 16 chr1 31019097 31019161 -211645192 - MIR SINE MIR -114 148 86 340 313 35 35 chr1 31019714 31019858 -211644495 + MIR SINE MIR 24 167 -95 1600 224 12 50 chr1 31019961 31020461 -211643892 - L1ME1 LINE L1 -3 6232 5752 * 6114 249 72 12 chr1 31020460 31023369 -211640984 - L1ME1 LINE L1 -3141 3074 27 399 321 28 0 chr1 31024112 31024221 -211640132 - MIR SINE MIR -115 147 36 4835 159 58 10 chr1 31024369 31025283 -211639070 + L1MB3 LINE L1 24 981 -5403 828 210 78 72 chr1 31025287 31025339 -211639014 - MSTC LTR MaLR 0 428 378 426 20 0 0 chr1 31025339 31025390 -211638963 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2110 137 3 0 chr1 31025390 31025682 -211638671 - AluSx SINE Alu -19 293 1 828 210 78 72 chr1 31025682 31026015 -211638338 - MSTC LTR MaLR -49 379 3 3159 155 58 5 chr1 31026016 31026648 -211637705 + L1MB3 LINE L1 982 1647 -4737 9554 203 45 17 chr1 31026655 31029486 -211634867 + L1MB3 LINE L1 2801 5747 -672 342 0 0 0 chr1 31029486 31029524 -211634829 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 9554 203 45 17 chr1 31029524 31030215 -211634138 + L1MB3 LINE L1 5747 6417 -2 473 239 0 8 chr1 31030491 31030608 -211633745 - MLT1H LTR MaLR -395 154 39 6645 27 0 0 chr1 31030645 31031449 -211632904 - L1PA2 LINE L1 0 6155 5352 347 243 81 104 chr1 31031494 31031667 -211632686 + L2 LINE L2 2926 3094 -178 213 265 0 0 chr1 31031828 31031877 -211632476 + GA-rich Low_complexity Low_complexity 2 50 0 909 208 44 35 chr1 31032500 31032726 -211631627 - MIR SINE MIR -23 239 12 848 289 115 32 chr1 31032747 31033125 -211631228 - L2 LINE L2 -3 3310 2884 2674 99 39 51 chr1 31033125 31033166 -211631187 - MSTA LTR MaLR 0 428 388 2187 101 18 3 chr1 31033166 31033475 -211630878 + AluSx SINE Alu 1 313 0 2674 99 39 51 chr1 31033475 31033864 -211630489 - MSTA LTR MaLR -40 388 1 848 289 115 32 chr1 31033864 31033953 -211630400 - L2 LINE L2 -429 2884 2804 984 247 119 31 chr1 31033967 31034444 -211629909 + LTR33 LTR ERVL 1 519 -2 511 298 53 14 chr1 31034465 31034673 -211629680 - L2 LINE L2 -534 2780 2565 462 221 87 16 chr1 31035290 31035388 -211628965 + MIR SINE MIR 92 202 -60 2598 137 21 19 chr1 31035388 31035813 -211628540 + MSTB LTR MaLR 1 426 0 462 221 87 16 chr1 31035813 31035841 -211628512 + MIR SINE MIR 202 227 -35 548 282 67 50 chr1 31036835 31037193 -211627160 - L2 LINE L2 -2 3311 2948 246 286 0 0 chr1 31037428 31037484 -211626869 + MIR3 SINE MIR 142 197 -11 316 322 8 0 chr1 31038486 31038604 -211625749 - MLT1K LTR MaLR -328 260 142 282 303 61 0 chr1 31039033 31039132 -211625221 + L2 LINE L2 3205 3309 -4 192 196 22 0 chr1 31039277 31039323 -211625030 + MIR SINE MIR 98 144 -118 225 0 0 0 chr1 31039559 31039584 -211624769 + (A)n Simple_repeat Simple_repeat 1 25 0 1141 284 47 21 chr1 31039999 31040425 -211623928 + L2 LINE L2 2830 3266 -47 213 265 131 37 chr1 31040715 31040836 -211623517 - MIR SINE MIR -65 143 10 21 0 0 0 chr1 31040901 31040922 -211623431 + AT_rich Low_complexity Low_complexity 1 21 0 323 239 0 0 chr1 31040976 31041043 -211623310 - MIR SINE MIR -84 178 112 2221 98 0 41 chr1 31041182 31041499 -211622854 + AluSx SINE Alu 1 304 -8 186 250 0 21 chr1 31042277 31042325 -211622028 - MIR SINE MIR 0 262 216 * 222 176 0 0 chr1 31042297 31042331 -211622022 - L2 LINE L2 -25 3288 3255 266 202 12 60 chr1 31042348 31042432 -211621921 - MER116 DNA Mariner 0 80 1 234 184 0 0 chr1 31042484 31042522 -211621831 - MIR SINE MIR -62 146 109 2076 122 42 50 chr1 31043155 31043533 -211620820 + THE1C LTR MaLR 1 375 0 848 166 36 57 chr1 31043678 31043871 -211620482 + MER53 DNA DNA 1 189 0 241 156 22 0 chr1 31044088 31044133 -211620220 - MER58A DNA MER1_type -1 223 178 52 58 0 0 chr1 31044138 31044225 -211620128 + AT_rich Low_complexity Low_complexity 1 87 0 864 222 11 5 chr1 31044225 31044410 -211619943 - MER58A DNA MER1_type -37 187 2 189 348 11 34 chr1 31044538 31044627 -211619726 + MIR3 SINE MIR 68 154 -54 548 261 55 6 chr1 31045646 31045811 -211618542 + MIR SINE MIR 70 242 -20 185 370 167 10 chr1 31045839 31046031 -211618322 - MIR SINE MIR -15 247 26 283 171 26 0 chr1 31046051 31046127 -211618226 + CT-rich Low_complexity Low_complexity 1 78 0 296 276 9 21 chr1 31046358 31046464 -211617889 + MIR SINE MIR 10 113 -95 616 288 83 38 chr1 31046656 31047028 -211617325 + MLT1I LTR MaLR 21 409 0 357 119 24 24 chr1 31047146 31047230 -211617123 + GA-rich Low_complexity Low_complexity 1 84 0 434 304 73 50 chr1 31047269 31047489 -211616864 + MIR SINE MIR 9 233 -29 232 338 0 12 chr1 31048066 31048146 -211616207 + MIR SINE MIR 37 115 -147 304 203 0 17 chr1 31048711 31048770 -211615583 - L2 LINE L2 -63 3250 3193 331 267 190 17 chr1 31048773 31048889 -211615464 + L2 LINE L2 3177 3312 -1 198 217 0 83 chr1 31049633 31049693 -211614660 - MIR SINE MIR -63 199 145 727 282 75 18 chr1 31050038 31050265 -211614088 + MIR SINE MIR 20 259 -3 370 224 13 0 chr1 31050274 31050342 -211614011 + MLT1E2 LTR MaLR 3 71 -434 870 97 0 0 chr1 31050342 31050466 -211613887 + MSTB1 LTR MaLR 1 124 -302 2370 85 3 0 chr1 31050476 31050770 -211613583 + AluSg SINE Alu 1 295 -15 1150 131 113 9 chr1 31050773 31050995 -211613358 + MSTB1 LTR MaLR 188 432 0 1512 251 91 43 chr1 31050995 31051533 -211612820 + MLT1E2 LTR MaLR 63 626 0 227 260 14 0 chr1 31052764 31052837 -211611516 + L2 LINE L2 2313 2386 -928 396 250 37 9 chr1 31053450 31053558 -211610795 + MIR SINE MIR 25 136 -72 296 292 62 0 chr1 31053894 31053990 -211610363 - MIR SINE MIR -47 215 114 327 209 0 55 chr1 31053999 31054090 -211610263 - MIR3 SINE MIR -28 180 95 435 331 21 0 chr1 31054440 31054582 -211609771 - L2 LINE L2 -480 2834 2690 317 198 93 23 chr1 31054801 31054887 -211609466 - L2 LINE L2 -21 3292 3201 400 307 53 26 chr1 31054943 31055132 -211609221 + MIR SINE MIR 23 216 -46 587 236 70 20 chr1 31056389 31056588 -211607765 - Charlie8 DNA MER1_type -2202 215 7 399 177 0 0 chr1 31056679 31056775 -211607578 + CT-rich Low_complexity Low_complexity 1 96 0 399 313 122 17 chr1 31057051 31057281 -211607072 - MIR SINE MIR -6 256 3 356 254 97 22 chr1 31057309 31057443 -211606910 - L2 LINE L2 -262 3010 2867 355 252 19 9 chr1 31057499 31057606 -211606747 - MLT1K LTR MaLR 0 588 481 422 148 0 23 chr1 31057645 31057733 -211606620 + (GGA)n Simple_repeat Simple_repeat 3 88 0 787 281 108 0 chr1 31057754 31057985 -211606368 - MIR SINE MIR -3 259 4 186 381 48 0 chr1 31058045 31058129 -211606224 - L2 LINE L2 -536 2778 2691 487 218 165 38 chr1 31059132 31059265 -211605088 - L2 LINE L2 -1 3271 3122 211 324 181 30 chr1 31059421 31060047 -211604306 + L2 LINE L2 2371 3107 -165 624 235 102 45 chr1 31060112 31060376 -211603977 - MLT1J2 LTR MaLR -118 332 54 1629 203 79 40 chr1 31060446 31060793 -211603560 - MLT1C LTR MaLR -4 463 94 2352 99 0 3 chr1 31060793 31061095 -211603258 - AluSc SINE Alu -7 302 2 1629 203 79 40 chr1 31061095 31061191 -211603162 - MLT1C LTR MaLR -373 94 3 250 222 133 0 chr1 31061866 31061956 -211602397 + MIR SINE MIR 30 131 -77 830 270 52 0 chr1 31062263 31062474 -211601879 - MIR SINE MIR -29 233 12 598 292 81 22 chr1 31062508 31062746 -211601607 - MIR SINE MIR 0 262 15 223 147 0 0 chr1 31062792 31062826 -211601527 - MIR SINE MIR -10 252 219 308 335 112 19 chr1 31062843 31063049 -211601304 - MIR SINE MIR -8 254 30 202 337 114 29 chr1 31063335 31063581 -211600772 - L3 LINE CR1 -54 1523 1257 448 310 35 18 chr1 31063614 31063785 -211600568 - MIR SINE MIR -6 256 83 288 314 21 7 chr1 31063906 31064046 -211600307 + MLT1L LTR MaLR 474 615 0 254 340 0 0 chr1 31064257 31064357 -211599996 - MIR SINE MIR -123 139 40 600 226 19 26 chr1 31064398 31064553 -211599800 + LTR41 LTR ERVL 1 154 -619 466 170 85 65 chr1 31064898 31065051 -211599302 + LTR41 LTR ERVL 608 763 -10 578 308 213 6 chr1 31066518 31066865 -211597488 + L2 LINE L2 2837 3255 -17 288 0 0 0 chr1 31066865 31066897 -211597456 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 231 121 0 0 chr1 31068086 31068119 -211596234 + MIR SINE MIR 117 149 -113 683 114 0 0 chr1 31068190 31068295 -211596058 - AluSg/x SINE Alu -4 308 204 2692 48 0 0 chr1 31068360 31068669 -211595684 + AluY SINE Alu 1 309 -2 638 200 88 33 chr1 31068671 31068911 -211595442 + L1ME1 LINE L1 5280 5532 -630 838 170 60 23 chr1 31069048 31069266 -211595087 - L1PA13 LINE L1 -3 6160 5935 * 2134 215 28 48 chr1 31069250 31069853 -211594500 + L1ME1 LINE L1 5517 6130 -54 2579 57 0 0 chr1 31069853 31070150 -211594203 + AluY SINE Alu 1 297 -14 2134 215 28 48 chr1 31070150 31070175 -211594178 + L1ME1 LINE L1 6130 6154 -30 1727 129 7 7 chr1 31070175 31070470 -211593883 - L1MA4 LINE L1 -8 6292 5998 2134 215 28 48 chr1 31070470 31070541 -211593812 + L1ME1 LINE L1 6154 6184 0 618 308 26 79 chr1 31070860 31071165 -211593188 + L2 LINE L2 2978 3266 -6 6518 204 63 27 chr1 31071373 31074010 -211590343 + L1MC3 LINE L1 3247 5401 -745 1043 335 53 26 chr1 31074013 31074595 -211589758 + L2 LINE L2 2298 2895 -419 2301 94 13 10 chr1 31075267 31075575 -211588778 - AluSq SINE Alu -4 309 1 2117 173 46 35 chr1 31075722 31075875 -211588478 - MER65C LTR ERV1 0 461 311 1863 135 43 0 chr1 31075875 31076156 -211588197 + AluJb SINE Alu 2 294 -18 2277 102 7 3 chr1 31076158 31076461 -211587892 + AluSq SINE Alu 1 304 -9 2117 173 46 35 chr1 31076461 31076760 -211587593 - MER65C LTR ERV1 -150 311 1 1601 272 15 30 chr1 31077401 31077453 -211586900 - MER4-int LTR ERV1 -816 4055 4004 2265 108 3 0 chr1 31077453 31077741 -211586612 + AluSg SINE Alu 1 289 -21 1601 272 15 30 chr1 31077741 31077931 -211586422 - MER4-int LTR ERV1 -867 4004 3813 2248 106 0 16 chr1 31077931 31078234 -211586119 + AluSx SINE Alu 1 298 -14 1601 272 15 30 chr1 31078234 31078449 -211585904 - MER4-int LTR ERV1 -1058 3813 3604 259 146 0 73 chr1 31078536 31078591 -211585762 - MER4-int LTR ERV1 -1069 5262 5212 2780 183 90 74 chr1 31078621 31079936 -211584417 - MER4-int LTR ERV1 -1228 5103 2469 956 151 13 128 chr1 31080015 31080320 -211584033 - MER4-int LTR ERV1 -2868 3730 3461 844 188 55 105 chr1 31080411 31080463 -211583890 - MER4-int LTR ERV1 -4310 2448 2395 2229 120 13 0 chr1 31080463 31080763 -211583590 + AluSq SINE Alu 1 304 -9 844 188 55 105 chr1 31080763 31081279 -211583074 - MER4-int LTR ERV1 -4363 2395 1909 670 226 84 42 chr1 31081315 31081370 -211582983 - MER4-int LTR ERV1 -5835 1981 1636 1216 184 40 25 chr1 31081370 31081647 -211582706 - LTR57-int LTR ERVL -3757 1586 1306 282 265 29 0 chr1 31081647 31081715 -211582638 + L1M1 LINE L1 14 83 -7482 1369 159 54 46 chr1 31081715 31082066 -211582287 - MER4-int LTR ERV1 -2942 1929 1576 938 248 124 10 chr1 31082071 31082378 -211581975 - MER34 LTR ERV1 -162 380 39 2184 174 15 34 chr1 31083120 31083170 -211581183 - MER65C LTR ERV1 0 461 412 1992 145 6 25 chr1 31083170 31083488 -211580865 - AluSx SINE Alu 0 312 1 2184 174 15 34 chr1 31083488 31083907 -211580446 - MER65C LTR ERV1 -49 412 1 198 0 0 0 chr1 31084064 31084086 -211580267 + (TG)n Simple_repeat Simple_repeat 2 23 0 225 213 28 19 chr1 31084129 31084237 -211580116 + GA-rich Low_complexity Low_complexity 2 110 0 1699 289 79 7 chr1 31084237 31084919 -211579434 - L2 LINE L2 -1014 2300 1570 692 333 45 16 chr1 31085033 31085415 -211578938 - L1MC4a LINE L1 -1894 5914 5522 256 294 111 33 chr1 31085819 31085972 -211578381 + MLT1J LTR MaLR 5 169 -342 254 159 32 16 chr1 31086009 31086072 -211578281 + MLT1L LTR MaLR 205 268 -347 278 267 42 42 chr1 31086192 31086312 -211578041 + MLT1J LTR MaLR 343 462 -49 230 300 58 33 chr1 31086388 31086508 -211577845 + MIR SINE MIR 17 139 -69 274 315 133 6 chr1 31086795 31086960 -211577393 + MIR3 SINE MIR 8 193 -15 338 306 24 8 chr1 31087347 31087471 -211576882 + MIR3 SINE MIR 82 207 -1 706 300 136 29 chr1 31087685 31088141 -211576212 + MLT1K LTR MaLR 78 582 -6 447 277 90 32 chr1 31088552 31088707 -211575646 - MIR3 SINE MIR -29 179 16 340 342 52 0 chr1 31089445 31089600 -211574753 - MIR SINE MIR -18 244 82 430 303 76 20 chr1 31091046 31091244 -211573109 - MLT1K LTR MaLR -6 582 374 1337 205 51 31 chr1 31091807 31092175 -211572178 + L1MD2 LINE L1 5953 7967 -28 1018 235 73 8 chr1 31092227 31092487 -211571866 - L1MDb LINE L1 -6088 321 45 270 197 15 0 chr1 31092492 31092558 -211571795 + L1MD1 LINE L1 6174 6240 -2 378 107 0 0 chr1 31093087 31093143 -211571210 + (TG)n Simple_repeat Simple_repeat 2 57 0 303 277 133 18 chr1 31093167 31093333 -211571020 - MIR SINE MIR -76 186 2 433 237 29 40 chr1 31093374 31093558 -211570795 - MIR SINE MIR -70 138 8 417 214 12 0 chr1 31094654 31094738 -211569615 + MIR SINE MIR 65 149 -113 183 139 0 0 chr1 31094796 31094832 -211569521 + (TA)n Simple_repeat Simple_repeat 1 36 0 356 287 118 0 chr1 31094880 31095016 -211569337 + L2 LINE L2 3118 3269 -3 495 282 92 11 chr1 31097488 31097662 -211566691 - MIR SINE MIR -66 196 9 369 242 104 36 chr1 31097668 31097882 -211566471 - L3 LINE CR1 -108 1469 1177 208 91 45 0 chr1 31098025 31098069 -211566284 + T-rich Low_complexity Low_complexity 2 47 0 397 250 9 0 chr1 31098219 31098331 -211566022 - L1MA10 LINE L1 -1 6333 6221 3463 72 4 0 chr1 31098336 31098811 -211565542 + L1PA7 LINE L1 5675 6151 -3 2221 211 104 25 chr1 31098812 31099824 -211564529 - L1ME LINE L1 -584 5582 4497 379 254 52 102 chr1 31099995 31100416 -211563937 + L2 LINE L2 2826 3225 -47 182 235 12 129 chr1 31100628 31100713 -211563640 - L3 LINE CR1 -135 1442 1368 304 245 11 32 chr1 31100872 31100966 -211563387 + MIR SINE MIR 60 151 -57 185 195 24 0 chr1 31101542 31101583 -211562770 - MIR SINE MIR -110 152 111 220 336 104 15 chr1 31102469 31102603 -211561750 - MIR SINE MIR -62 146 1 320 324 115 17 chr1 31102899 31103186 -211561167 + L2 LINE L2 1749 2063 -1251 200 276 0 17 chr1 31103210 31103268 -211561085 + L3 LINE CR1 1375 1431 -146 278 301 124 47 chr1 31103296 31103380 -211560973 - MIR SINE MIR -12 250 174 2751 33 0 0 chr1 31103380 31103685 -211560668 - AluY SINE Alu -6 305 1 278 301 124 47 chr1 31103685 31103793 -211560560 - MIR SINE MIR -88 174 43 * 333 342 77 21 chr1 31103790 31104024 -211560329 - MIR SINE MIR 0 262 16 605 288 21 58 chr1 31104418 31104658 -211559695 - MIR SINE MIR -12 250 20 395 292 119 16 chr1 31104704 31104889 -211559464 - MIR SINE MIR -10 252 49 272 329 68 48 chr1 31105497 31105643 -211558710 + MIR3 SINE MIR 17 165 -43 2833 127 14 10 chr1 31105748 31106238 -211558115 - L1MB3 LINE L1 -2 6181 5690 303 173 0 0 chr1 31106238 31106290 -211558063 + MLT2B3 LTR ERVL 5 56 -498 2045 169 101 42 chr1 31106470 31106926 -211557427 + MLT2B3 LTR ERVL 71 553 -1 2150 169 14 33 chr1 31106927 31107321 -211557032 - L1MB3 LINE L1 -485 5698 5313 2528 71 0 0 chr1 31107321 31107618 -211556735 + AluY SINE Alu 1 297 -14 2150 169 14 33 chr1 31107618 31107783 -211556570 - L1MB3 LINE L1 -870 5313 5146 3285 112 14 10 chr1 31107819 31108328 -211556025 + MER9 LTR ERVK 1 511 0 598 153 34 25 chr1 31108328 31108446 -211555907 + HERVK9 LTR ERVK 1 119 -5797 * 4805 125 61 53 chr1 31108441 31108681 -211555672 - HERVK9 LTR ERVK -4856 1060 823 195 196 0 71 chr1 31108681 31108737 -211555616 - MER5B DNA MER1_type -72 106 55 4805 125 61 53 chr1 31108737 31109396 -211554957 - HERVK9 LTR ERVK -5093 823 99 3229 123 8 6 chr1 31109413 31109923 -211554430 - MER9 LTR ERVK 0 511 1 2644 87 0 3 chr1 31110048 31110404 -211553949 - THE1A LTR MaLR 0 355 1 788 179 17 0 chr1 31111055 31111228 -211553125 + (CACCAT)n Simple_repeat Simple_repeat 4 179 0 227 238 0 0 chr1 31111228 31111270 -211553083 + (CCA)n Simple_repeat Simple_repeat 1 42 0 1309 223 59 30 chr1 31111271 31111675 -211552678 + LTR52 LTR ERVL 1 416 -5 688 240 80 0 chr1 31111749 31111924 -211552429 - MIR SINE MIR -32 230 42 232 344 22 0 chr1 31111941 31112031 -211552322 - L3b LINE CR1 -188 1395 1304 197 307 34 0 chr1 31112094 31112182 -211552171 + L2 LINE L2 2148 2238 -1076 236 256 228 39 chr1 31112229 31112409 -211551944 - MIR SINE MIR -28 234 21 1403 194 8 88 chr1 31112800 31113197 -211551156 - MLT1A1 LTR MaLR 0 365 1 292 227 182 0 chr1 31113388 31113476 -211550877 - L2 LINE L2 -13 3300 3197 364 313 0 0 chr1 31113592 31113691 -211550662 + MIR SINE MIR 49 147 -61 323 295 14 50 chr1 31114605 31114654 -211549699 - L2 LINE L2 -6 3266 3217 2611 184 24 0 chr1 31114654 31115115 -211549238 - MER70A LTR ERVL 0 472 1 323 295 14 50 chr1 31115115 31115204 -211549149 - L2 LINE L2 -55 3217 3133 315 130 0 0 chr1 31115352 31115406 -211548947 + (CCA)n Simple_repeat Simple_repeat 1 54 0 5717 138 6 43 chr1 31115679 31116683 -211547670 - MSTA-int LTR MaLR -611 969 3 324 175 16 0 chr1 31116685 31116748 -211547605 - MSTA LTR MaLR 0 428 365 425 109 31 0 chr1 31116848 31116912 -211547441 - Alu SINE Alu -243 67 2 1927 173 36 49 chr1 31117060 31117224 -211547129 - MER65C LTR ERV1 0 461 296 1815 145 43 0 chr1 31117224 31117506 -211546847 + AluJb SINE Alu 2 295 -17 2221 105 7 7 chr1 31117508 31117812 -211546541 + AluSq SINE Alu 1 304 -9 1927 173 36 49 chr1 31117812 31118111 -211546242 - MER65C LTR ERV1 -166 295 1 1635 270 15 30 chr1 31118748 31118800 -211545553 - MER31-int LTR ERV1 -816 4055 4004 2274 108 3 0 chr1 31118800 31119088 -211545265 + AluSg SINE Alu 1 289 -21 1635 270 15 30 chr1 31119088 31119278 -211545075 - MER31-int LTR ERV1 -867 4004 3813 2261 103 0 17 chr1 31119278 31119580 -211544773 + AluSx SINE Alu 1 297 -15 1635 270 15 30 chr1 31119580 31119795 -211544558 - MER31-int LTR ERV1 -1058 3813 3604 335 268 0 37 chr1 31119881 31119963 -211544390 - MER31-int LTR ERV1 -977 3959 3881 2234 194 127 46 chr1 31119967 31120777 -211543576 - MER31-int LTR ERV1 -1228 5103 4228 276 200 0 0 chr1 31120790 31120855 -211543498 + (CCA)n Simple_repeat Simple_repeat 1 65 0 906 162 0 0 chr1 31120871 31121050 -211543303 + (CCA)n Simple_repeat Simple_repeat 1 179 0 277 237 0 0 chr1 31121054 31121113 -211543240 + (CAT)n Simple_repeat Simple_repeat 1 59 0 232 222 87 79 chr1 31121151 31121277 -211543076 - MIR SINE MIR -36 226 100 271 191 0 0 chr1 31122327 31122374 -211541979 - L2 LINE L2 0 3272 3226 852 254 46 17 chr1 31122425 31122665 -211541688 + MIR SINE MIR 13 259 -3 278 268 89 18 chr1 31122724 31122836 -211541517 - MIR SINE MIR -73 135 16 729 342 62 28 chr1 31123046 31123543 -211540810 - MLT1L LTR MaLR 0 615 102 204 361 129 0 chr1 31123950 31124213 -211540140 - L2 LINE L2 -337 2977 2681 425 194 5 85 chr1 31124336 31124482 -211539871 - MIR3 SINE MIR -22 186 46 259 314 17 0 chr1 31125139 31125257 -211539096 + MIR SINE MIR 30 149 -59 284 283 92 26 chr1 31126116 31126268 -211538085 - MIR SINE MIR -97 165 4 210 118 0 0 chr1 31126523 31126557 -211537796 + (GA)n Simple_repeat Simple_repeat 1 34 0 231 111 0 0 chr1 31127330 31127366 -211536987 - MIR SINE MIR -8 254 219 267 104 0 0 chr1 31127872 31127920 -211536433 + (TC)n Simple_repeat Simple_repeat 1 48 0 219 312 9 28 chr1 31128101 31128210 -211536143 + L2 LINE L2 2935 3041 -231 691 284 61 40 chr1 31128322 31128699 -211535654 + LTR16C LTR ERVL 97 481 -10 223 339 93 8 chr1 31129618 31129736 -211534617 - MIR SINE MIR -64 144 17 549 262 55 14 chr1 31129816 31129961 -211534392 + MIR3 SINE MIR 21 171 -37 180 275 87 0 chr1 31129989 31130058 -211534295 + MIR SINE MIR 111 185 -77 224 379 46 20 chr1 31130473 31130626 -211533727 + MIR SINE MIR 3 159 -103 1892 166 7 0 chr1 31130628 31130923 -211533430 - AluJo SINE Alu -15 297 1 203 312 13 0 chr1 31131604 31131681 -211532672 - MIR SINE MIR -137 125 48 468 284 34 14 chr1 31131935 31132083 -211532270 - MIR3 SINE MIR -10 198 48 276 330 30 0 chr1 31132776 31132876 -211531477 - MIR SINE MIR -109 153 51 334 350 0 10 chr1 31133151 31133254 -211531099 + MIR SINE MIR 21 122 -86 217 147 29 73 chr1 31133610 31133678 -211530675 + A-rich Low_complexity Low_complexity 3 67 0 267 177 123 62 chr1 31135494 31135624 -211528729 + MLT1K LTR MaLR 278 415 -173 533 330 20 5 chr1 31136894 31137091 -211527262 - MIR SINE MIR -32 230 31 418 267 53 0 chr1 31137670 31137801 -211526552 + MLT1I LTR MaLR 250 387 -22 566 328 43 8 chr1 31138136 31138371 -211525982 + MIR SINE MIR 2 244 -18 927 234 37 11 chr1 31138447 31138716 -211525637 + MLT2D LTR ERVL 91 366 -48 239 406 0 0 chr1 31138904 31139042 -211525311 + (CA)n Simple_repeat Simple_repeat 1 138 0 21 0 0 0 chr1 31139245 31139266 -211525087 + AT_rich Low_complexity Low_complexity 1 21 0 438 222 65 0 chr1 31140007 31140115 -211524238 - MIR SINE MIR -87 175 61 554 211 63 14 chr1 31140518 31140660 -211523693 - MIR SINE MIR -79 183 35 187 245 19 19 chr1 31140892 31140945 -211523408 - MIR3 SINE MIR -12 196 144 589 252 129 29 chr1 31141379 31141589 -211522764 + MIR SINE MIR 19 249 -13 190 274 148 59 chr1 31142278 31142413 -211521940 + MIR SINE MIR 86 232 -30 820 229 49 0 chr1 31142475 31142698 -211521655 + MIR SINE MIR 15 248 -14 250 176 20 20 chr1 31142875 31142926 -211521427 - MER4-int LTR ERV1 -5443 1155 1105 498 271 174 0 chr1 31143288 31143506 -211520847 + MER102b DNA MER1_type 83 338 -3 422 212 26 35 chr1 31143583 31143696 -211520657 + L2 LINE L2 3187 3298 -15 778 252 70 14 chr1 31144171 31144385 -211519968 + MIR SINE MIR 8 233 -29 186 198 0 49 chr1 31145073 31145154 -211519199 + GA-rich Low_complexity Low_complexity 3 79 0 380 311 59 17 chr1 31145259 31145378 -211518975 - L2 LINE L2 -31 3241 3118 885 260 51 4 chr1 31145454 31145689 -211518664 + MIR SINE MIR 17 262 0 1104 253 104 69 chr1 31145860 31146398 -211517955 + MLT1K LTR MaLR 22 578 -10 190 297 108 0 chr1 31146411 31146522 -211517831 - L2 LINE L2 -307 2965 2843 248 221 59 0 chr1 31146829 31146897 -211517456 + GA-rich Low_complexity Low_complexity 1 72 0 339 250 30 60 chr1 31146926 31147004 -211517349 - MIR SINE MIR -63 145 69 1860 171 13 3 chr1 31147004 31147303 -211517050 + AluJo SINE Alu 1 302 -10 339 250 30 60 chr1 31147303 31147324 -211517029 - MIR SINE MIR -139 69 49 879 310 8 12 chr1 31147454 31147699 -211516654 - MIR SINE MIR 0 262 19 231 175 35 35 chr1 31148065 31148122 -211516231 - L2 LINE L2 -77 3195 3139 255 299 198 34 chr1 31148295 31148563 -211515790 - L2 LINE L2 -425 2889 2578 241 248 16 108 chr1 31148613 31148742 -211515611 + L2 LINE L2 3140 3256 -57 329 269 121 86 chr1 31149399 31149737 -211514616 - L2 LINE L2 -94 3178 2829 214 333 74 0 chr1 31150195 31150303 -211514050 - L2 LINE L2 -7 3265 3150 663 241 49 30 chr1 31150435 31150638 -211513715 + MIR SINE MIR 40 246 -16 200 276 186 30 chr1 31150765 31151029 -211513324 - L2 LINE L2 -446 2868 2564 321 310 0 0 chr1 31152132 31152219 -211512134 + (CA)n Simple_repeat Simple_repeat 2 88 0 430 176 108 29 chr1 31152239 31152341 -211512012 + MIR SINE MIR 38 147 -61 233 298 0 0 chr1 31153199 31153268 -211511085 + MIR SINE MIR 77 146 -62 341 311 123 23 chr1 31155028 31155247 -211509106 - MIR SINE MIR -18 244 4 239 218 105 121 chr1 31155249 31155373 -211508980 + MIR SINE MIR 111 232 -30 336 83 0 0 chr1 31155391 31155439 -211508914 + (CA)n Simple_repeat Simple_repeat 1 48 0 591 321 60 15 chr1 31155590 31155858 -211508495 + L1ME4a LINE L1 5574 5853 -268 480 273 106 58 chr1 31156530 31156805 -211507548 - L2 LINE L2 0 3313 3026 207 200 0 0 chr1 31157713 31157753 -211506600 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1640 173 10 36 chr1 31157930 31158231 -211506122 - AluJo SINE Alu -19 293 1 4130 251 94 11 chr1 31158502 31159611 -211504742 + L1ME2 LINE L1 2635 3897 -2249 1794 155 0 38 chr1 31159611 31159902 -211504451 + AluJb SINE Alu 1 280 -32 4130 251 94 11 chr1 31159902 31160264 -211504089 + L1ME2 LINE L1 3897 4228 -1918 3731 162 40 26 chr1 31160262 31162422 -211501931 + L1ME2 LINE L1 4800 6086 -78 * 183 100 0 0 chr1 31162552 31162582 -211501771 + (TCTCC)n Simple_repeat Simple_repeat 3 32 0 720 232 80 12 chr1 31163385 31163673 -211500680 + MLT1F LTR MaLR 193 542 0 848 279 112 32 chr1 31164114 31164616 -211499737 + L1ME4a LINE L1 5559 6100 -21 933 199 0 0 chr1 31164889 31165050 -211499303 - MIR SINE MIR -96 166 6 1973 145 24 32 chr1 31165147 31165526 -211498827 - L1PA16 LINE L1 -1 6165 5790 268 243 57 64 chr1 31165730 31165870 -211498483 + MLT1J LTR MaLR 334 472 -39 259 138 75 11 chr1 31165924 31166018 -211498335 + (TA)n Simple_repeat Simple_repeat 1 100 0 399 211 33 3 chr1 31166032 31166346 -211498007 + (TA)n Simple_repeat Simple_repeat 1 323 0 333 261 33 22 chr1 31166357 31166449 -211497904 + L1MC4 LINE L1 6613 6705 -1337 355 221 32 0 chr1 31166468 31166626 -211497727 + (TA)n Simple_repeat Simple_repeat 1 163 0 373 72 60 0 chr1 31166918 31167001 -211497352 + (TA)n Simple_repeat Simple_repeat 2 89 0 334 264 33 11 chr1 31167001 31167092 -211497261 - L1MC4 LINE L1 -1337 6705 6613 1798 267 72 4 chr1 31167092 31167774 -211496579 + L1MEc LINE L1 1587 2314 -4082 366 238 0 0 chr1 31167741 31167825 -211496528 + L1ME1 LINE L1 5996 6079 -156 * 350 243 54 0 chr1 31167828 31167939 -211496414 + L1MA10 LINE L1 6217 6333 -1 318 333 89 6 chr1 31168067 31168247 -211496106 + L3 LINE CR1 643 837 -740 560 232 219 22 chr1 31168482 31168685 -211495668 - MIR SINE MIR -2 260 17 301 339 119 0 chr1 31168698 31168875 -211495478 + L3 LINE CR1 982 1179 -398 282 235 71 35 chr1 31168910 31168995 -211495358 - L2 LINE L2 -50 3263 3176 201 147 0 0 chr1 31169000 31169034 -211495319 + (CA)n Simple_repeat Simple_repeat 1 34 0 1095 192 113 0 chr1 31169046 31169305 -211495048 - L1ME LINE L1 -508 5656 5360 250 225 14 14 chr1 31169329 31169400 -211494953 + (TA)n Simple_repeat Simple_repeat 2 72 0 386 293 9 35 chr1 31169401 31169517 -211494836 + L1MC4 LINE L1 6593 6705 -1337 309 322 17 26 chr1 31169456 31169571 -211494782 - L1MC4 LINE L1 -1339 6703 6590 * 234 240 10 39 chr1 31169606 31169710 -211494643 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 1907 77 11 4 chr1 31169823 31170096 -211494257 - HERVL-A2 LTR ERVL -115 5539 5265 * 34526 67 3 3 chr1 31170089 31174563 -211489790 - HERVL-A2 LTR ERVL -1180 4474 1 385 38 38 0 chr1 31174563 31174616 -211489737 - MLT2A2 LTR ERVL 0 453 399 323 222 111 0 chr1 31174617 31174698 -211489655 - L1MC4 LINE L1 -1339 6703 6614 2738 62 49 10 chr1 31174698 31175087 -211489266 - MLT2A1 LTR ERVL -40 404 1 204 158 0 0 chr1 31175143 31175181 -211489172 + GA-rich Low_complexity Low_complexity 1 38 0 269 312 37 24 chr1 31175283 31175475 -211488878 - MIR SINE MIR -18 244 50 377 272 165 27 chr1 31175547 31175771 -211488582 - LTR41 LTR ERVL -13 760 506 575 186 78 12 chr1 31176027 31176194 -211488159 - LTR41 LTR ERVL -579 194 17 601 254 42 11 chr1 31176199 31176388 -211487965 + MER58 DNA MER1_type 1 195 -2225 257 214 29 0 chr1 31176361 31176430 -211487923 + MER58 DNA MER1_type 2259 2329 -91 1581 148 122 10 chr1 31176430 31176734 -211487619 + MER44D DNA MER2_type 1 608 -1 384 214 20 0 chr1 31176734 31176828 -211487525 + MER58 DNA MER1_type 2321 2416 -4 2464 100 0 0 chr1 31176848 31177158 -211487195 + AluSx SINE Alu 1 310 -2 1878 95 4 4 chr1 31177343 31177586 -211486767 + AluSx SINE Alu 17 259 -53 316 219 37 61 chr1 31177896 31177978 -211486375 - MIR3 SINE MIR -21 187 108 259 293 112 9 chr1 31178001 31178117 -211486236 + MIR SINE MIR 16 143 -65 769 231 78 80 chr1 31179124 31179522 -211484831 - LTR16A1 LTR ERVL -5 452 56 1008 270 73 16 chr1 31179883 31180268 -211484085 - L1ME LINE L1 -440 5724 5318 430 293 49 30 chr1 31180269 31180433 -211483920 - L1ME LINE L1 -1680 4466 4300 181 239 0 98 chr1 31180551 31180643 -211483710 + MIR SINE MIR 124 206 -56 * 828 228 35 5 chr1 31180642 31180839 -211483514 - MIR SINE MIR -59 203 1 281 189 95 14 chr1 31180865 31180939 -211483414 + MIR SINE MIR 178 257 -5 326 368 34 10 chr1 31180941 31181145 -211483208 - L2 LINE L2 -39 3233 3025 264 268 62 31 chr1 31182746 31182843 -211481510 - MIR3 SINE MIR -51 157 58 210 171 0 0 chr1 31183118 31183153 -211481200 - MIR SINE MIR -6 256 222 398 306 98 21 chr1 31183179 31183372 -211480981 - MIR SINE MIR -9 253 46 571 221 67 20 chr1 31183669 31183846 -211480507 - MIR SINE MIR -61 147 3 339 316 0 0 chr1 31184146 31184241 -211480112 + CT-rich Low_complexity Low_complexity 1 95 0 221 0 35 0 chr1 31185280 31185309 -211479044 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 346 247 67 30 chr1 31186256 31186388 -211477965 + MIR SINE MIR 88 227 -35 1293 289 34 48 chr1 31186724 31187785 -211476568 - L1ME3 LINE L1 -199 5963 4915 1342 283 114 43 chr1 31187906 31188847 -211475506 - L1ME3 LINE L1 -1384 4762 3698 2082 125 3 17 chr1 31188847 31189169 -211475184 - AluSg SINE Alu 0 310 1 1342 283 114 43 chr1 31189169 31189559 -211474794 - L1ME3 LINE L1 -2448 3698 3337 240 316 30 71 chr1 31189567 31189735 -211474618 - MIR SINE MIR -57 205 45 271 350 69 72 chr1 31189968 31190274 -211474079 - L2 LINE L2 -50 3222 2918 3443 218 45 34 chr1 31190386 31190688 -211473665 + MER45B DNA AcHobo 5 302 -1279 4092 136 34 6 chr1 31190688 31191370 -211472983 + L1MB3 LINE L1 5476 6176 -7 3443 218 45 34 chr1 31191370 31191956 -211472397 + MER45B DNA AcHobo 302 903 -137 2721 237 30 39 chr1 31191956 31192192 -211472161 + L1M4 LINE L1 3643 3879 -2267 1693 210 0 10 chr1 31192192 31192502 -211471851 + AluJo SINE Alu 1 307 -5 2721 237 30 39 chr1 31192502 31192985 -211471368 + L1M4 LINE L1 3879 4356 -1790 2227 115 0 7 chr1 31192985 31193281 -211471072 - AluSx SINE Alu -18 294 1 2721 237 30 39 chr1 31193281 31193418 -211470935 + L1M4 LINE L1 4356 4493 -1653 457 258 60 31 chr1 31193426 31193712 -211470641 + L1MEc LINE L1 1325 1584 -4956 513 172 25 49 chr1 31193724 31193846 -211470507 + MLT1E2 LTR MaLR 505 623 -3 449 277 18 6 chr1 31193865 31194031 -211470322 + L1MCc LINE L1 152 319 -6104 1216 259 75 32 chr1 31194065 31194765 -211469588 + L1MCc LINE L1 1096 1868 -5073 438 20 0 0 chr1 31194765 31194816 -211469537 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1216 259 75 32 chr1 31194816 31195066 -211469287 + L1MCc LINE L1 1868 2106 -4835 308 171 29 57 chr1 31195078 31195148 -211469205 - L1MCa LINE L1 -4364 2062 1995 2581 110 56 17 chr1 31195277 31195713 -211468640 + MLT2A1 LTR ERVL 32 515 0 205 330 36 18 chr1 31196678 31196790 -211467563 + MIR SINE MIR 103 216 -46 352 163 71 61 chr1 31196838 31196936 -211467417 + MIR3 SINE MIR 64 162 -46 361 272 178 11 chr1 31196950 31197130 -211467223 + L2 LINE L2 3010 3219 -94 206 162 27 0 chr1 31197155 31197192 -211467161 + CT-rich Low_complexity Low_complexity 3 40 0 232 327 0 35 chr1 31197204 31197317 -211467036 - L2 LINE L2 -38 3275 3167 182 259 17 17 chr1 31198603 31198661 -211465692 - MIR3 SINE MIR -31 177 120 349 306 236 5 chr1 31198979 31199195 -211465158 - L3 LINE CR1 0 1577 1312 645 171 0 0 chr1 31199553 31199699 -211464654 + (CA)n Simple_repeat Simple_repeat 1 146 0 398 331 0 8 chr1 31201653 31201774 -211462579 + MIR SINE MIR 13 132 -130 * 431 252 122 16 chr1 31201772 31201895 -211462458 - MIR SINE MIR -109 153 18 1508 198 0 15 chr1 31201931 31202204 -211462149 - AluJo SINE Alu -4 308 40 254 301 21 43 chr1 31202371 31202464 -211461889 + MIR SINE MIR 166 256 -6 180 241 35 17 chr1 31202839 31202897 -211461456 + MIR SINE MIR 64 122 -140 * 2525 99 43 8 chr1 31202904 31203256 -211461097 + THE1B LTR MaLR 1 364 0 333 331 57 6 chr1 31203256 31203402 -211460951 - MIR3 SINE MIR -11 197 41 285 344 57 0 chr1 31203375 31203497 -211460856 + MIR3 SINE MIR 7 135 -73 * 421 278 9 0 chr1 31203783 31203891 -211460462 + MIR SINE MIR 154 262 0 281 191 22 45 chr1 31204680 31204769 -211459584 + MLT1K LTR MaLR 491 577 -11 394 270 145 30 chr1 31204824 31205024 -211459329 - MIR SINE MIR -18 244 22 231 88 0 0 chr1 31205625 31205659 -211458694 + (CTCA)n Simple_repeat Simple_repeat 2 35 0 192 77 0 0 chr1 31205936 31205962 -211458391 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 192 125 0 0 chr1 31206186 31206218 -211458135 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 333 255 185 19 chr1 31206246 31206403 -211457950 - MIR SINE MIR -78 184 2 272 261 0 0 chr1 31206549 31206614 -211457739 - MIR SINE MIR -63 145 81 361 250 204 0 chr1 31207201 31207309 -211457044 + L2 LINE L2 3184 3313 0 191 384 98 0 chr1 31207400 31207512 -211456841 - MIR SINE MIR -63 145 23 961 229 9 14 chr1 31207677 31207895 -211456458 - MER20 DNA MER1_type -1 218 2 400 280 24 16 chr1 31207933 31208058 -211456295 + L2 LINE L2 3165 3290 -23 646 207 40 0 chr1 31208726 31208876 -211455477 - L1MA10 LINE L1 -4 6330 6175 1704 222 71 31 chr1 31208876 31209384 -211454969 - L1ME1 LINE L1 -151 6015 5488 8003 235 65 20 chr1 31209422 31209882 -211454471 - L1ME1 LINE L1 -749 5397 4959 1598 178 6 68 chr1 31209882 31210203 -211454150 - AluJb SINE Alu -11 301 1 8003 235 65 20 chr1 31210203 31212517 -211451836 - L1ME1 LINE L1 -1187 4959 2515 2456 228 52 16 chr1 31212517 31214074 -211450279 - L1MC/D LINE L1 -600 5711 4654 472 291 0 6 chr1 31214090 31214272 -211450081 - L1MC/D LINE L1 -1610 4605 4425 180 0 0 0 chr1 31214300 31214320 -211450033 + (TG)n Simple_repeat Simple_repeat 1 20 0 4682 259 87 15 chr1 31214352 31215053 -211449300 - L1MC/D LINE L1 -4602 1794 1145 2124 124 3 16 chr1 31215053 31215360 -211448993 - AluSx SINE Alu -7 305 3 4682 259 87 15 chr1 31215360 31216300 -211448053 - L1MC/D LINE L1 -5251 1145 35 6307 132 17 11 chr1 31216620 31217164 -211447189 - L1MC1 LINE L1 -5 6328 5772 2321 224 30 60 chr1 31217164 31217795 -211446558 - LTR9 LTR ERV1 0 612 1 6307 132 17 11 chr1 31217795 31218293 -211446060 - L1MC1 LINE L1 -561 5772 5279 1742 160 92 37 chr1 31218293 31218694 -211445659 - LTR44 LTR ERV1 0 519 97 1861 167 10 0 chr1 31218699 31218987 -211445366 - AluJb SINE Alu -21 291 1 330 266 0 0 chr1 31218987 31219075 -211445278 - L1MC1 LINE L1 -869 5277 5190 701 282 17 21 chr1 31219134 31219368 -211444985 - MIR SINE MIR -2 260 28 541 266 76 16 chr1 31219964 31220148 -211444205 - MIR SINE MIR -22 240 46 191 176 0 29 chr1 31220217 31220251 -211444102 + MIR SINE MIR 118 150 -58 200 208 0 19 chr1 31220406 31220459 -211443894 + (CAGGG)n Simple_repeat Simple_repeat 4 55 0 732 221 5 6 chr1 31220853 31221919 -211442434 + (CA)n Simple_repeat Simple_repeat 1 1065 0 403 305 30 8 chr1 31222440 31222571 -211441782 - MIR3 SINE MIR -38 170 37 604 291 23 6 chr1 31223405 31223580 -211440773 + MIR SINE MIR 73 250 -12 397 298 122 33 chr1 31223604 31224030 -211440323 - L2 LINE L2 0 3272 2809 328 255 104 9 chr1 31224388 31224494 -211439859 - L2 LINE L2 -13 3259 3144 407 207 147 0 chr1 31225890 31226006 -211438347 - MIR SINE MIR -115 147 15 238 269 87 0 chr1 31227804 31227908 -211436445 - MLT1L LTR MaLR -11 604 492 314 293 12 0 chr1 31228518 31228600 -211435753 - L2 LINE L2 -1 3312 3230 199 333 0 0 chr1 31228860 31228908 -211435445 - MIR SINE MIR -117 91 44 1002 195 0 0 chr1 31229080 31229249 -211435104 + FRAM SINE Alu 1 166 -10 522 279 55 16 chr1 31229858 31230041 -211434312 + MIR SINE MIR 2 191 -71 198 340 131 21 chr1 31230051 31230242 -211434111 + MIR SINE MIR 33 244 -18 962 248 29 25 chr1 31230345 31230587 -211433766 + MIR SINE MIR 20 262 0 225 253 36 36 chr1 31230599 31230682 -211433671 - MIR3 SINE MIR -15 193 111 237 312 48 0 chr1 31230893 31231018 -211433335 - L1ME4a LINE L1 -4 6117 5987 1154 273 70 38 chr1 31231066 31231539 -211432814 - LTR53 LTR ERVL -11 508 21 326 256 39 121 chr1 31231591 31231872 -211432481 - MLT1I LTR MaLR -61 348 91 416 280 150 16 chr1 31232244 31232944 -211431409 + L2 LINE L2 2508 3303 -10 192 77 0 0 chr1 31233081 31233107 -211431246 + (GCCTG)n Simple_repeat Simple_repeat 4 29 0 351 0 0 0 chr1 31233803 31233842 -211430511 + (TTA)n Simple_repeat Simple_repeat 2 40 0 195 262 0 0 chr1 31234335 31234377 -211429976 - MIR SINE MIR -6 256 215 203 269 72 12 chr1 31234721 31234806 -211429547 - MIR SINE MIR -93 115 45 260 324 34 68 chr1 31235717 31235865 -211428488 - MIR3 SINE MIR -32 176 34 614 215 6 74 chr1 31235905 31236068 -211428285 + MIR SINE MIR 101 252 -10 193 207 35 17 chr1 31236143 31236201 -211428152 - L3b LINE CR1 -423 1160 1102 291 317 50 52 chr1 31236447 31236614 -211427739 + L1MEd LINE L1 1114 1280 -5136 4383 165 11 8 chr1 31236614 31237334 -211427019 + MER72 LTR ERV1 1 722 0 291 317 50 52 chr1 31237334 31237604 -211426749 + L1MEd LINE L1 1280 1550 -4866 374 178 100 11 chr1 31237788 31237889 -211426464 + L1ME3A LINE L1 5919 6027 -137 261 317 67 35 chr1 31237942 31238226 -211426127 + HAL1 LINE L1 1453 1745 -762 852 171 0 0 chr1 31238409 31238538 -211425815 + FLAM_A SINE Alu 1 129 -4 355 291 67 68 chr1 31238539 31238874 -211425479 + L1MEd LINE L1 2087 3476 -2950 244 246 46 0 chr1 31238894 31238959 -211425394 + MIR SINE MIR 84 151 -111 541 317 29 10 chr1 31239069 31239277 -211425076 - MIR SINE MIR -28 234 23 344 223 27 62 chr1 31239223 31239335 -211425018 + MIR SINE MIR 30 137 -71 * 219 69 0 0 chr1 31239641 31239670 -211424683 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 361 299 60 8 chr1 31239803 31239937 -211424416 + L2 LINE L2 3108 3248 -65 305 240 52 5 chr1 31239949 31240060 -211424293 + MIR SINE MIR 72 150 -58 293 277 134 27 chr1 31240442 31240554 -211423799 - MIR SINE MIR -111 151 28 346 245 20 49 chr1 31242099 31242201 -211422152 - L2 LINE L2 0 3272 3174 195 250 33 17 chr1 31242296 31242356 -211421997 - MIR SINE MIR -56 152 92 253 326 17 17 chr1 31242899 31243074 -211421279 + (TTTA)n Simple_repeat Simple_repeat 3 177 0 * 413 250 22 43 chr1 31243064 31243248 -211421105 + (TTCA)n Simple_repeat Simple_repeat 1 180 0 1923 132 3 21 chr1 31243462 31243770 -211420583 - AluSq SINE Alu 0 303 1 1559 162 44 0 chr1 31243835 31244106 -211420247 - MER47B DNA MER2_type -1 417 135 3218 141 69 0 chr1 31244123 31244671 -211419682 - LTR38B LTR ERV1 -24 586 1 438 229 0 0 chr1 31244683 31244766 -211419587 - MER47B DNA MER2_type -335 83 1 800 270 55 42 chr1 31244917 31245321 -211419032 - LTR16C LTR ERVL 0 491 83 306 271 178 8 chr1 31245447 31245576 -211418777 - MIR3 SINE MIR -17 191 41 306 231 13 39 chr1 31246485 31246563 -211417790 + L2 LINE L2 2590 2665 -649 334 273 67 20 chr1 31247945 31248146 -211416207 - MIR SINE MIR -35 227 20 348 308 115 0 chr1 31248364 31248494 -211415859 + MIR SINE MIR 111 255 -7 283 197 16 16 chr1 31248982 31249043 -211415310 + L2 LINE L2 2590 2650 -664 322 260 163 8 chr1 31249444 31249567 -211414786 - MIR SINE MIR -108 154 13 285 294 119 28 chr1 31250043 31250220 -211414133 + L3 LINE CR1 1066 1258 -319 2095 191 25 17 chr1 31250220 31250716 -211413637 - Tigger7 DNA MER2_type 0 2487 34 451 232 24 24 chr1 31252952 31253077 -211411276 + MIR SINE MIR 19 143 -119 1073 196 26 93 chr1 31254046 31254657 -211409696 - MER4C LTR ERV1 0 465 1 502 311 14 0 chr1 31254730 31254878 -211409475 - MIR SINE MIR -111 151 2 452 206 56 54 chr1 31255481 31255659 -211408694 + MIR SINE MIR 15 184 -52 262 228 13 76 chr1 31256226 31256305 -211408048 + MIR SINE MIR 82 155 -107 198 322 56 11 chr1 31256384 31256474 -211407879 + MIR SINE MIR 151 244 -18 2491 196 12 18 chr1 31256533 31257241 -211407112 - LTR27 LTR ERV1 0 636 3 730 254 15 45 chr1 31257494 31257695 -211406658 + MIR3 SINE MIR 12 206 -2 348 299 51 45 chr1 31257986 31258163 -211406190 - MLT1K LTR MaLR -73 515 338 910 126 224 32 chr1 31258205 31258498 -211405855 + MER31B LTR ERV1 1 466 0 467 338 36 14 chr1 31258512 31258731 -211405622 - MLT1K LTR MaLR -324 264 41 3294 224 91 19 chr1 31258971 31259273 -211405080 + L1MC3 LINE L1 6709 6988 -797 216 67 0 0 chr1 31259273 31259303 -211405050 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 3294 224 91 19 chr1 31259303 31259991 -211404362 + L1MC3 LINE L1 6988 7770 -15 309 342 8 8 chr1 31260003 31260123 -211404230 - MIR3 SINE MIR -40 168 49 748 297 63 48 chr1 31261022 31261416 -211402937 + L1MC4a LINE L1 5512 5911 -1897 3948 265 66 31 chr1 31261540 31263230 -211401123 + L2 LINE L2 1549 3312 -1 807 274 120 33 chr1 31263295 31263810 -211400543 - MLT1G LTR MaLR -5 562 3 3324 151 31 0 chr1 31264305 31264860 -211399493 + LTR31 LTR ERV1 47 618 -1 315 302 42 37 chr1 31265251 31265564 -211398789 - MLT1G-int LTR MaLR -770 601 292 888 261 64 47 chr1 31265682 31266201 -211398152 - MLT1G LTR MaLR -7 560 18 382 310 9 0 chr1 31266722 31266835 -211397518 + MLT1G LTR MaLR 111 224 -366 2097 94 23 55 chr1 31267173 31267480 -211396873 - AluSx SINE Alu -15 297 1 2191 244 64 15 chr1 31267570 31268893 -211395460 + L1MDb LINE L1 876 3392 -3014 3388 214 60 105 chr1 31268915 31269456 -211394897 + L1MDb LINE L1 3733 4297 -2288 216 86 0 0 chr1 31269456 31269491 -211394862 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3388 214 60 105 chr1 31269491 31269645 -211394708 + L1MDb LINE L1 4297 4456 -2129 2284 98 3 0 chr1 31269645 31269973 -211394380 + AluSx SINE Alu 4 312 0 3388 214 60 105 chr1 31269973 31270670 -211393683 + L1MDb LINE L1 4456 5183 -1402 479 162 0 0 chr1 31270670 31270744 -211393609 + AluJ/FRAM SINE Alu 224 297 -15 3388 214 60 105 chr1 31270744 31271199 -211393154 + L1MDb LINE L1 5183 5578 -1007 3161 145 35 9 chr1 31271199 31271744 -211392609 + MER89 LTR ERV1 1 559 0 3388 214 60 105 chr1 31271744 31271998 -211392355 + L1MDb LINE L1 5578 5842 -743 341 184 0 40 chr1 31272088 31272160 -211392193 + MER82 DNA MER2_type 138 206 -447 1771 235 162 24 chr1 31272160 31272820 -211391533 + LTR1B LTR ERV1 1 751 -75 2052 221 20 0 chr1 31272938 31273381 -211390972 + MER82 DNA MER2_type 201 652 -1 369 0 0 0 chr1 31273413 31273454 -211390899 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 286 63 71 chr1 31273649 31273775 -211390578 - L2 LINE L2 -8 3305 3181 214 247 204 11 chr1 31275080 31275173 -211389180 - MIR SINE MIR -118 144 34 191 255 0 39 chr1 31275337 31275388 -211388965 + L2 LINE L2 3246 3294 -19 225 299 65 37 chr1 31275500 31275607 -211388746 - L2 LINE L2 -1 3312 3203 254 386 88 23 chr1 31275761 31275932 -211388421 + L3 LINE CR1 900 1081 -496 401 279 0 10 chr1 31275935 31276039 -211388314 - MIR SINE MIR -97 165 63 490 245 28 117 chr1 31276047 31276109 -211388244 - MLT1J LTR MaLR -280 231 165 309 118 0 0 chr1 31276109 31276160 -211388193 + (CA)n Simple_repeat Simple_repeat 2 52 0 490 245 28 117 chr1 31276160 31276195 -211388158 - MLT1J LTR MaLR -346 165 128 1355 144 208 117 chr1 31276195 31276559 -211387794 + MER4A LTR ERV1 1 433 -167 2101 164 0 0 chr1 31276559 31276869 -211387484 - AluSx SINE Alu -2 310 1 1355 144 208 117 chr1 31276869 31277052 -211387301 + MER4A LTR ERV1 433 598 -2 490 245 28 117 chr1 31277052 31277202 -211387151 - MLT1J LTR MaLR -383 128 5 792 303 113 22 chr1 31277518 31277974 -211386379 - L2 LINE L2 0 3272 2784 394 208 0 0 chr1 31278969 31279041 -211385312 - MIR SINE MIR -142 120 49 2723 167 34 6 chr1 31279159 31279632 -211384721 + MER66B LTR ERV1 1 486 0 3578 216 83 24 chr1 31279646 31280571 -211383782 + MER66B-int LTR ERV1 116 1095 -5581 626 76 0 0 chr1 31280581 31280660 -211383693 + MADE1 DNA Mariner 1 79 -1 698 245 85 20 chr1 31280708 31280908 -211383445 + MER66B-int LTR ERV1 2890 3102 -3574 7335 166 23 28 chr1 31281001 31282371 -211381982 + MER66B-int LTR ERV1 1210 2572 -4104 1683 103 0 0 chr1 31282368 31282601 -211381752 + MER66B-int LTR ERV1 4962 5194 -1482 * 1205 187 8 12 chr1 31282600 31282841 -211381512 + MER66B-int LTR ERV1 2592 2831 -3845 * 12975 117 13 13 chr1 31282892 31283138 -211381215 + MER66B-int LTR ERV1 4603 4848 -1828 4776 43 5 0 chr1 31283138 31283713 -211380640 + L1PA7 LINE L1 5577 6154 0 12975 117 13 13 chr1 31283713 31285518 -211378835 + MER66B-int LTR ERV1 4847 6654 -22 2403 164 40 6 chr1 31285531 31286000 -211378353 + MER66B LTR ERV1 2 486 0 198 244 0 0 chr1 31286266 31286311 -211378042 + MIR SINE MIR 69 113 -149 207 292 0 14 chr1 31286795 31286867 -211377486 + G-rich Low_complexity Low_complexity 4 74 0 446 282 82 39 chr1 31287243 31287498 -211376855 + L2 LINE L2 2985 3250 -63 302 328 46 15 chr1 31287989 31288120 -211376233 + L2 LINE L2 3179 3313 0 239 340 47 0 chr1 31288528 31288634 -211375719 + L2 LINE L2 3144 3254 -18 272 346 26 39 chr1 31288642 31288798 -211375555 + MIR SINE MIR 88 241 -21 305 321 9 0 chr1 31289344 31289450 -211374903 - MIR SINE MIR -72 136 30 309 270 9 27 chr1 31290389 31290500 -211373853 + MIR SINE MIR 16 124 -84 589 108 118 0 chr1 31290501 31290603 -211373750 - AluSg/x SINE Alu -16 293 180 332 294 135 0 chr1 31290626 31290752 -211373601 + MIR SINE MIR 120 262 0 276 369 15 15 chr1 31290753 31290883 -211373470 - L2 LINE L2 0 3313 3184 290 306 50 50 chr1 31291009 31291208 -211373145 - L2 LINE L2 -798 2516 2318 915 220 11 0 chr1 31292057 31292234 -211372119 - MIR SINE MIR -76 186 8 481 313 62 70 chr1 31292422 31292937 -211371416 - LTR67 LTR ERVL -1 556 46 229 236 95 23 chr1 31293556 31293650 -211370703 + MIR SINE MIR 41 141 -67 357 306 35 12 chr1 31294060 31294233 -211370120 + GA-rich Low_complexity Low_complexity 2 178 0 2175 109 0 7 chr1 31294234 31294548 -211369805 + AluSx SINE Alu 1 312 0 275 323 3 57 chr1 31294565 31294886 -211369467 + GA-rich Low_complexity Low_complexity 1 303 0 2155 117 6 25 chr1 31295181 31295497 -211368856 + AluSx SINE Alu 1 310 -2 441 301 29 0 chr1 31295513 31295649 -211368704 + MIR3 SINE MIR 9 148 -60 199 267 81 109 chr1 31295695 31295916 -211368437 - MIR SINE MIR 0 262 48 626 312 36 20 chr1 31296671 31296918 -211367435 + MIR SINE MIR 10 260 -2 372 284 92 0 chr1 31297204 31297345 -211367008 + MIR3 SINE MIR 33 186 -22 1692 122 0 4 chr1 31297997 31298234 -211366119 - AluSq SINE Alu -7 306 71 246 310 69 47 chr1 31299287 31299419 -211364934 + MIR SINE MIR 3 133 -75 219 409 83 0 chr1 31299524 31299656 -211364697 + L2 LINE L2 3112 3254 -18 302 339 43 26 chr1 31299691 31299806 -211364547 - HAL1b LINE L1 -1147 201 85 2204 135 0 3 chr1 31299853 31300165 -211364188 - AluSx SINE Alu -1 311 1 404 37 19 0 chr1 31300182 31300236 -211364117 + (CA)n Simple_repeat Simple_repeat 2 56 0 1155 65 18 6 chr1 31301115 31301285 -211363068 + (TTTC)n Simple_repeat Simple_repeat 3 174 0 2084 117 11 7 chr1 31301294 31301700 -211362653 - AluSx SINE Alu 0 407 1 799 293 119 23 chr1 31302598 31303431 -211360922 + L2 LINE L2 2396 3308 -5 187 246 291 25 chr1 31304500 31304699 -211359654 + L2 LINE L2 2448 2699 -615 379 211 133 0 chr1 31304727 31304817 -211359536 + MER69 DNA AcHobo 2 103 -1123 * 2073 234 20 27 chr1 31304811 31305404 -211358949 + MER69 DNA AcHobo 1938 2526 0 183 339 85 7 chr1 31305455 31305738 -211358615 + L2 LINE L2 2819 3123 -190 215 375 12 0 chr1 31305881 31305961 -211358392 + L2 LINE L2 3182 3262 -10 465 274 20 13 chr1 31305962 31306115 -211358238 + L1ME4a LINE L1 5528 5681 -440 369 241 26 38 chr1 31306142 31306267 -211358086 + MIR SINE MIR 34 155 -58 1019 122 61 0 chr1 31306419 31306633 -211357720 - MER33 DNA MER1_type -16 347 121 225 59 29 0 chr1 31306640 31306674 -211357679 - U3 snRNA snRNA -182 35 1 1937 139 11 0 chr1 31306679 31306952 -211357401 - AluSx SINE Alu -36 276 1 479 215 11 0 chr1 31306964 31307057 -211357296 - MER33 DNA MER1_type -230 94 1 485 277 42 55 chr1 31307060 31307367 -211356986 + L1ME4a LINE L1 5768 6070 -51 659 311 17 40 chr1 31307475 31307774 -211356579 + MLT1H LTR MaLR 13 304 -245 1858 220 8 25 chr1 31307996 31308392 -211355961 + MSTD LTR MaLR 8 396 0 368 264 140 73 chr1 31308605 31308737 -211355616 - L1ME4a LINE L1 -1 6120 5998 237 33 0 0 chr1 31308737 31308767 -211355586 + (TG)n Simple_repeat Simple_repeat 2 31 0 368 264 140 73 chr1 31308767 31309126 -211355227 - L1ME4a LINE L1 -123 5998 5596 257 316 26 0 chr1 31309688 31309764 -211354589 + MIR SINE MIR 41 118 -90 1044 293 53 30 chr1 31309764 31310194 -211354159 + MLT1J2 LTR MaLR 1 440 -10 242 286 13 26 chr1 31310572 31310649 -211353704 + MIR SINE MIR 108 183 -79 483 314 23 6 chr1 31311554 31311726 -211352627 + L2 LINE L2 2904 3078 -194 1589 179 32 56 chr1 31311826 31312200 -211352153 - MLT1B LTR MaLR -22 368 4 427 339 145 21 chr1 31312383 31312769 -211351584 - MLT1K LTR MaLR -10 578 145 514 157 31 42 chr1 31312855 31313116 -211351237 + CT-rich Low_complexity Low_complexity 1 258 0 2324 71 14 3 chr1 31313169 31313452 -211350901 - AluY SINE Alu -25 286 1 807 249 49 45 chr1 31313618 31314096 -211350257 - MLT1F1 LTR MaLR 0 567 7 663 273 45 73 chr1 31314251 31314581 -211349772 - L2 LINE L2 0 3272 2952 2005 143 53 36 chr1 31314700 31314877 -211349476 - THE1B LTR MaLR 0 364 191 2287 119 0 3 chr1 31314877 31315189 -211349164 + AluSx SINE Alu 1 311 -1 2005 143 53 36 chr1 31315189 31315369 -211348984 - THE1B LTR MaLR -173 191 1 589 281 88 44 chr1 31315388 31315705 -211348648 + L2 LINE L2 2981 3311 -2 1475 202 73 3 chr1 31315765 31316106 -211348247 + MLT1A1 LTR MaLR 1 365 0 3223 114 55 18 chr1 31316983 31317491 -211346862 - MER1A DNA MER1_type 0 527 1 1136 256 105 19 chr1 31317967 31318432 -211345921 - LTR33 LTR ERVL -16 505 1 634 276 93 39 chr1 31318433 31318534 -211345819 + L2 LINE L2 2790 2884 -429 2719 99 41 7 chr1 31318534 31318948 -211345405 + MSTA LTR MaLR 1 428 0 634 276 93 39 chr1 31318948 31319326 -211345027 + L2 LINE L2 2884 3307 -6 433 256 267 5 chr1 31319353 31319548 -211344805 + MIR SINE MIR 17 262 0 186 227 0 0 chr1 31319737 31319781 -211344572 + L2 LINE L2 3014 3057 -215 501 62 0 0 chr1 31320210 31320275 -211344078 + (TCCC)n Simple_repeat Simple_repeat 3 67 0 345 297 36 0 chr1 31320442 31320553 -211343800 - L2 LINE L2 -253 3060 2946 737 248 218 37 chr1 31320656 31321120 -211343233 + MLT1H LTR MaLR 1 548 -1 559 312 78 9 chr1 31321176 31321407 -211342946 + MIR SINE MIR 3 249 -13 350 208 104 28 chr1 31321528 31321634 -211342719 - MER81 DNA DNA 0 114 1 585 270 22 11 chr1 31322783 31322961 -211341392 + MIR SINE MIR 40 219 -43 1905 209 51 53 chr1 31323472 31323508 -211340845 - MLT2B1 LTR ERVL -51 469 434 2265 126 0 0 chr1 31323508 31323810 -211340543 + AluSx SINE Alu 1 302 -10 1905 209 51 53 chr1 31323810 31324243 -211340110 - MLT2B1 LTR ERVL -86 434 1 2328 126 0 0 chr1 31324734 31325044 -211339309 - AluSg SINE Alu 0 310 1 502 225 23 58 chr1 31325353 31325611 -211338742 - L1MC5 LINE L1 -261 7700 7452 476 211 12 84 chr1 31325724 31325890 -211338463 - MER46C DNA MER2_type -182 156 3 303 313 20 27 chr1 31325893 31326043 -211338310 - MIR SINE MIR -112 150 2 837 297 71 28 chr1 31326316 31326710 -211337643 - MER115 DNA AcHobo -259 434 24 1073 258 73 23 chr1 31327495 31327879 -211336474 - MLT1H LTR MaLR -146 403 1 327 200 54 8 chr1 31327885 31327984 -211336369 - MIR SINE MIR -66 196 93 296 316 44 9 chr1 31328189 31328303 -211336050 - L2 LINE L2 -212 3060 2943 386 265 36 54 chr1 31328534 31328700 -211335653 + MLT1J2 LTR MaLR 260 422 -28 280 260 112 54 chr1 31328746 31328969 -211335384 - L2 LINE L2 -5 3308 3073 360 264 74 8 chr1 31329064 31329185 -211335168 - MIR SINE MIR -34 228 100 303 231 77 0 chr1 31329438 31329542 -211334811 + MIR SINE MIR 81 192 -70 507 248 41 0 chr1 31329698 31329819 -211334534 + L2 LINE L2 3187 3312 -1 262 254 64 36 chr1 31329824 31329934 -211334419 - MIR SINE MIR -63 145 33 214 231 0 0 chr1 31330590 31330629 -211333724 + polypyrimidine Low_complexity Low_complexity 1 39 0 242 298 124 16 chr1 31330629 31330750 -211333603 - L2 LINE L2 -5 3308 3175 1522 215 106 63 chr1 31330837 31331284 -211333069 + MLT2B2 LTR ERVL 2 473 -42 1210 23 23 6 chr1 31331284 31331455 -211332898 + (TCTA)n Simple_repeat Simple_repeat 2 175 0 1522 215 106 63 chr1 31331455 31331500 -211332853 + MLT2B2 LTR ERVL 473 515 0 400 204 85 42 chr1 31332639 31332787 -211331566 + MIR SINE MIR 3 155 -61 386 68 0 17 chr1 31333165 31333224 -211331129 + (ATG)n Simple_repeat Simple_repeat 3 60 0 314 192 141 13 chr1 31333671 31333749 -211330604 - MIR3 SINE MIR -43 165 78 869 225 99 40 chr1 31333750 31333833 -211330520 - L1M3c LINE L1 -4900 1241 1164 2267 111 6 19 chr1 31333833 31334149 -211330204 + AluSq SINE Alu 1 312 -1 869 225 99 40 chr1 31334149 31334255 -211330098 - L1M3c LINE L1 -4977 1164 1066 189 74 0 0 chr1 31334255 31334282 -211330071 + (TTG)n Simple_repeat Simple_repeat 1 27 0 869 225 99 40 chr1 31334282 31334393 -211329960 - L1M3c LINE L1 -5075 1066 922 253 301 40 15 chr1 31334414 31334675 -211329678 - L1M1 LINE L1 -4289 2093 1754 540 364 19 5 chr1 31334802 31335008 -211329345 - MIR SINE MIR -37 225 17 454 228 11 0 chr1 31335217 31335309 -211329044 - MIR SINE MIR -91 171 79 296 183 56 127 chr1 31335469 31335595 -211328758 + L2 LINE L2 2919 3035 -237 315 225 67 0 chr1 31336348 31336438 -211327915 - MIR SINE MIR -76 132 28 421 255 34 136 chr1 31337317 31337611 -211326742 + L2 LINE L2 3005 3268 -4 510 278 44 30 chr1 31337863 31338028 -211326325 + MIR SINE MIR 2 165 -56 694 200 84 13 chr1 31338425 31338580 -211325773 - L2 LINE L2 -257 3056 2891 523 263 26 19 chr1 31338805 31338961 -211325392 - MIR SINE MIR -55 207 51 538 314 26 16 chr1 31339099 31339290 -211325063 + MIR SINE MIR 29 221 -41 2294 117 7 0 chr1 31339308 31339616 -211324737 + AluSx SINE Alu 1 310 -2 278 323 101 17 chr1 31339735 31339946 -211324407 + MIR SINE MIR 20 250 -12 2304 106 0 3 chr1 31340726 31341019 -211323334 + AluSg SINE Alu 1 292 -18 289 244 77 26 chr1 31341113 31341191 -211323162 + L2 LINE L2 3232 3313 0 222 216 129 36 chr1 31341466 31341574 -211322779 + MIR SINE MIR 34 153 -109 264 320 0 0 chr1 31342679 31342692 -211321661 + MIR SINE MIR 106 118 -144 1569 216 10 3 chr1 31342692 31342998 -211321355 - AluJo SINE Alu -4 308 1 264 320 0 0 chr1 31342998 31343059 -211321294 + MIR SINE MIR 117 180 -82 500 271 99 17 chr1 31343199 31343380 -211320973 + MIR SINE MIR 38 233 -29 208 257 0 19 chr1 31343386 31343491 -211320862 + CT-rich Low_complexity Low_complexity 2 104 0 434 334 49 13 chr1 31343549 31343854 -211320499 - L1ME4a LINE L1 -178 5943 5628 321 291 35 35 chr1 31344101 31344273 -211320080 + L2 LINE L2 3092 3304 -9 290 85 0 21 chr1 31344298 31344345 -211320008 + (CA)n Simple_repeat Simple_repeat 2 47 0 357 309 235 10 chr1 31344479 31344683 -211319670 + MIR SINE MIR 1 250 -12 430 311 48 5 chr1 31345153 31345362 -211318991 - Charlie8 DNA MER1_type -2184 233 16 365 313 183 18 chr1 31345532 31345756 -211318597 + MIR SINE MIR 2 262 0 252 389 25 5 chr1 31345806 31346009 -211318344 + LTR16B LTR ERVL 256 462 -2 377 329 76 22 chr1 31346029 31346254 -211318099 + HERV16 LTR ERVL 10 246 -4750 251 329 0 0 chr1 31346446 31346522 -211317831 + HERV16 LTR ERVL 382 457 -4539 1172 301 172 11 chr1 31346653 31347027 -211317326 + HERV16 LTR ERVL 591 903 -4093 1559 197 114 39 chr1 31347027 31347439 -211316914 + LTR47B LTR ERVL 1 443 0 1172 301 172 11 chr1 31347439 31347698 -211316655 + HERV16 LTR ERVL 903 1326 -3670 1416 213 36 17 chr1 31347917 31348431 -211315922 + L1MD2 LINE L1 5783 6358 -1 1990 316 43 21 chr1 31348556 31349346 -211315007 + HERV16 LTR ERVL 1824 2630 -2366 249 232 254 21 chr1 31350045 31350187 -211314166 + MIR SINE MIR 70 244 -18 328 233 17 78 chr1 31350846 31350962 -211313391 + L3 LINE CR1 1392 1500 -77 660 305 31 13 chr1 31350965 31351191 -211313162 + MIR SINE MIR 6 235 -27 2648 115 3 3 chr1 31351644 31352008 -211312345 + THE1B LTR MaLR 1 364 0 602 279 136 85 chr1 31352509 31353001 -211311352 - LTR33A LTR ERVL -5 518 2 913 276 67 63 chr1 31353790 31354389 -211309964 - MLT2F LTR ERVL -60 603 3 310 257 191 33 chr1 31354557 31354709 -211309644 + MER5B DNA MER1_type 1 176 -2 180 219 0 0 chr1 31355555 31355587 -211308766 - L2 LINE L2 -16 3297 3266 180 182 61 0 chr1 31355559 31355592 -211308761 - L2 LINE L2 -20 3252 3218 369 123 0 0 chr1 31355602 31355667 -211308686 + (TG)n Simple_repeat Simple_repeat 2 66 0 419 278 85 90 chr1 31357401 31357836 -211306517 + L2 LINE L2 2836 3268 -4 378 268 66 73 chr1 31359482 31359799 -211304554 - L2 LINE L2 -447 2867 2553 376 265 84 13 chr1 31361514 31361711 -211302642 - MIR SINE MIR -48 214 3 349 282 101 24 chr1 31362151 31362360 -211301993 - LTR33A LTR ERVL 0 523 299 775 263 26 5 chr1 31362718 31362912 -211301441 + MIR SINE MIR 46 243 -19 388 259 27 9 chr1 31362924 31363036 -211301317 + MIR3 SINE MIR 87 200 -8 187 171 0 157 chr1 31363573 31363615 -211300738 + MIR SINE MIR 104 132 -130 1787 178 7 0 chr1 31363615 31363901 -211300452 + AluJo SINE Alu 1 288 -24 187 171 0 157 chr1 31363901 31363928 -211300425 + MIR SINE MIR 132 162 -100 536 292 43 105 chr1 31364000 31364552 -211299801 + MLT1K LTR MaLR 71 588 0 212 313 84 0 chr1 31364567 31364650 -211299703 + MIR SINE MIR 173 262 0 690 307 97 12 chr1 31364700 31365039 -211299314 + L2 LINE L2 2919 3286 -27 443 191 7 99 chr1 31365039 31365180 -211299173 - MLT1H LTR MaLR 0 549 422 205 297 46 11 chr1 31366125 31366266 -211298087 - MIR SINE MIR -63 199 51 218 247 56 34 chr1 31367163 31367252 -211297101 + L2 LINE L2 2954 3044 -228 209 256 0 0 chr1 31367903 31367946 -211296407 + (TGAG)n Simple_repeat Simple_repeat 1 43 0 363 242 242 0 chr1 31368794 31368918 -211295435 + MIR3 SINE MIR 30 183 -25 243 240 93 0 chr1 31368937 31369012 -211295341 + MIR SINE MIR 111 192 -70 296 350 71 41 chr1 31369442 31369639 -211294714 + MIR SINE MIR 1 203 -59 193 376 12 24 chr1 31370183 31370268 -211294085 - MIR SINE MIR -151 111 28 556 213 55 49 chr1 31370544 31370708 -211293645 - MIR3 SINE MIR -27 181 17 289 260 169 26 chr1 31371065 31371219 -211293134 - L1ME1 LINE L1 -4 6162 5987 219 344 52 31 chr1 31371299 31371395 -211292958 - L2 LINE L2 -218 3054 2957 193 320 40 0 chr1 31372003 31372078 -211292275 + MIR3 SINE MIR 85 162 -46 210 321 132 9 chr1 31372142 31372248 -211292105 + MIR SINE MIR 125 243 -19 544 289 27 7 chr1 31372314 31372463 -211291890 + MIR3 SINE MIR 42 193 -15 2525 213 86 29 chr1 31372752 31374278 -211290075 - L1ME1 LINE L1 -10 6154 4553 2508 239 30 17 chr1 31374306 31375148 -211289205 - L1ME1 LINE L1 -1736 4410 3558 1785 94 0 0 chr1 31375157 31375381 -211288972 + AluSc SINE Alu 86 309 0 404 291 8 8 chr1 31375886 31376003 -211288350 - L1ME1 LINE L1 -2471 3675 3559 1277 184 5 0 chr1 31376013 31376236 -211288117 + AluSc SINE Alu 86 309 0 3965 247 45 15 chr1 31376285 31377401 -211286952 - L1ME1 LINE L1 -2656 3490 2329 1977 124 41 72 chr1 31377401 31377788 -211286565 + THE1C LTR MaLR 1 375 0 3965 247 45 15 chr1 31377788 31377952 -211286401 - L1ME1 LINE L1 -3817 2329 2171 282 313 71 0 chr1 31378575 31378687 -211285666 - L2 LINE L2 -6 3266 3147 239 207 37 37 chr1 31378708 31378790 -211285563 - MIR SINE MIR -87 121 40 649 130 0 0 chr1 31378884 31378984 -211285369 - LTR12 LTR ERV1 0 714 615 348 176 33 22 chr1 31378986 31379077 -211285276 - LTR30 LTR ERV1 -79 643 552 800 188 56 126 chr1 31379077 31379501 -211284852 - LTR12 LTR ERV1 -430 1683 54 244 250 0 0 chr1 31379501 31379553 -211284800 - LTR30 LTR ERV1 -670 52 1 212 241 0 0 chr1 31379713 31379771 -211284582 + A-rich Low_complexity Low_complexity 2 59 0 425 261 49 0 chr1 31379968 31380110 -211284243 - MLT1L LTR MaLR -348 267 119 292 336 75 0 chr1 31380592 31380699 -211283654 + L2 LINE L2 3157 3271 -1 2027 123 44 0 chr1 31381591 31381908 -211282445 + LTR26 LTR ERV1 1 331 -272 3119 70 0 0 chr1 31381908 31382307 -211282046 + LTR66 LTR ERVL 1 399 -211 474 141 0 54 chr1 31382287 31382379 -211281974 + LTR66 LTR ERVL 314 400 -210 * 1528 81 47 111 chr1 31382381 31382678 -211281675 + LTR66 LTR ERVL 332 609 -1 1606 143 15 0 chr1 31382679 31382952 -211281401 + LTR26 LTR ERV1 327 603 0 518 302 71 32 chr1 31383037 31383289 -211281064 - MIR SINE MIR 0 262 1 * 1039 233 85 51 chr1 31383289 31383828 -211280525 - L2 LINE L2 -28 3285 2725 255 281 271 0 chr1 31383863 31383959 -211280394 + L2 LINE L2 3136 3257 -15 2131 249 77 41 chr1 31384019 31384287 -211280066 + L1ME1 LINE L1 5110 5367 -799 6678 133 101 12 chr1 31384287 31385480 -211278873 + HSMAR2 DNA Mariner 3 1302 0 2131 249 77 41 chr1 31385480 31386217 -211278136 + L1ME1 LINE L1 5367 6162 -4 486 254 86 43 chr1 31387352 31387584 -211276769 + MLT1K LTR MaLR 347 588 0 213 373 109 0 chr1 31387948 31388058 -211276295 - L2 LINE L2 0 3272 3151 301 269 126 18 chr1 31388931 31389098 -211275255 - HAL1 LINE L1 -22 2485 2301 393 209 139 57 chr1 31389258 31389416 -211274937 - MLT1K LTR MaLR -71 517 347 426 299 48 96 chr1 31389533 31390211 -211274142 - L2 LINE L2 -17 3255 2619 996 245 54 108 chr1 31390346 31391310 -211273043 + L1ME LINE L1 606 1767 -4494 4317 66 0 0 chr1 31391355 31391887 -211272466 - L1PA6 LINE L1 -9 6145 5614 7564 123 14 28 chr1 31391887 31393154 -211271199 + L1P LINE L1 560 1808 -4338 11092 24 7 1 chr1 31393154 31395014 -211269339 + L1PA5 LINE L1 4035 5899 -255 284 229 14 0 chr1 31395212 31395282 -211269071 - MLT2B3 LTR ERVL -483 71 1 263 338 13 0 chr1 31395374 31395451 -211268902 + MIR SINE MIR 48 125 -83 1966 245 67 57 chr1 31395892 31396565 -211267788 - MER115 DNA AcHobo -9 684 5 543 326 41 5 chr1 31397634 31397852 -211266501 - MIR SINE MIR -24 238 13 181 279 114 0 chr1 31397889 31397916 -211266437 - MIR SINE MIR -34 228 205 871 94 86 0 chr1 31397916 31398044 -211266309 - MER85 DNA T2_type 0 139 1 181 279 114 0 chr1 31398044 31398095 -211266258 - MIR SINE MIR -57 205 141 301 117 9 3 chr1 31400131 31400184 -211264169 + MLT2F LTR ERVL 343 663 0 629 193 16 152 chr1 31400212 31400456 -211263897 + MLT1D-int LTR MaLR 1161 1371 0 1857 164 132 78 chr1 31400456 31400933 -211263420 + MLT1D LTR MaLR 1 503 -2 427 149 122 0 chr1 31401455 31401529 -211262824 + MER63 DNA MER1_type 44 752 -310 440 135 122 0 chr1 31401842 31401916 -211262437 + MER63 DNA MER1_type 44 752 -84 294 306 139 7 chr1 31402699 31402843 -211261510 - MER5A DNA MER1_type 0 189 27 330 288 130 22 chr1 31402949 31403308 -211261045 + MLT1J2 LTR MaLR 37 395 -14 671 109 20 0 chr1 31403384 31403485 -211260868 - MER84 LTR ERVI 0 507 405 1373 87 0 5 chr1 31403620 31403804 -211260549 - L1PA10 LINE L1 -11 6157 5975 2792 88 17 33 chr1 31403805 31404114 -211260239 - MER84 LTR ERVI -90 417 115 2461 91 0 0 chr1 31404114 31404423 -211259930 - AluSc SINE Alu 0 309 1 2792 88 17 33 chr1 31404423 31404535 -211259818 - MER84 LTR ERVI -392 115 3 328 256 73 44 chr1 31405177 31405314 -211259039 + LTR16B LTR ERVL 322 462 -2 219 250 42 0 chr1 31405490 31405538 -211258815 + MIR SINE MIR 39 88 -174 225 0 0 0 chr1 31405564 31405589 -211258764 + (TG)n Simple_repeat Simple_repeat 1 25 0 270 171 0 0 chr1 31405657 31405727 -211258626 + (TG)n Simple_repeat Simple_repeat 1 70 0 539 222 206 21 chr1 31406032 31406226 -211258127 + MIR SINE MIR 20 249 -13 3439 163 243 16 chr1 31406535 31407413 -211256940 - MER52C LTR ERV1 0 1278 202 230 288 15 0 chr1 31407832 31407898 -211256455 - MER52A LTR ERV1 -1688 67 1 249 33 0 0 chr1 31408046 31408076 -211256277 + (CAT)n Simple_repeat Simple_repeat 2 31 0 279 79 0 0 chr1 31408081 31408119 -211256234 + (TCC)n Simple_repeat Simple_repeat 3 40 0 23 0 0 0 chr1 31408275 31408298 -211256055 + AT_rich Low_complexity Low_complexity 1 23 0 749 186 0 0 chr1 31408298 31408416 -211255937 - FLAM_C SINE Alu -15 118 1 203 244 26 26 chr1 31408419 31408497 -211255856 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 477 0 0 0 chr1 31408499 31408552 -211255801 + (CA)n Simple_repeat Simple_repeat 1 53 0 366 260 92 14 chr1 31409113 31409267 -211255086 - MIR SINE MIR -61 201 38 203 211 54 167 chr1 31409316 31409520 -211254833 + L2 LINE L2 2969 3149 -164 272 297 29 101 chr1 31409878 31410016 -211254337 - MIR SINE MIR -117 145 18 254 269 239 36 chr1 31410684 31410851 -211253502 + MIR SINE MIR 43 243 -19 254 302 57 25 chr1 31410906 31411065 -211253288 - MIR SINE MIR -78 184 21 384 263 142 57 chr1 31411483 31411691 -211252662 - MIR SINE MIR -2 260 40 507 288 68 31 chr1 31412020 31412183 -211252170 + MIR SINE MIR 1 171 -37 224 250 29 15 chr1 31412241 31412309 -211252044 - MIR SINE MIR 0 262 194 240 298 33 58 chr1 31412515 31412636 -211251717 + MER5A DNA MER1_type 62 179 -10 2177 112 3 22 chr1 31412954 31413286 -211251067 - AluSc SINE Alu 0 309 1 396 273 59 47 chr1 31413288 31413541 -211250812 - L1M4c LINE L1 -4177 2469 2214 427 267 5 51 chr1 31413583 31413778 -211250575 - L1M4c LINE L1 -4547 2099 1914 462 168 92 60 chr1 31413778 31413963 -211250390 + Charlie1 DNA MER1_type 2526 2716 -45 1063 53 0 0 chr1 31413998 31414131 -211250222 - L1PA8 LINE L1 -4 6168 6036 1848 78 0 0 chr1 31414132 31414387 -211249966 + L1P LINE L1 4840 5094 -1052 * 5863 233 44 33 chr1 31414386 31416244 -211248109 - L1M4c LINE L1 -4758 1888 16 4683 188 18 44 chr1 31416285 31417100 -211247253 - L1MB8 LINE L1 0 6178 5343 2406 75 7 0 chr1 31417100 31417392 -211246961 - AluY SINE Alu -17 294 1 4683 188 18 44 chr1 31417392 31417522 -211246831 - L1MB8 LINE L1 -835 5343 5211 203 0 37 0 chr1 31417522 31417549 -211246804 + (TA)n Simple_repeat Simple_repeat 2 29 0 4683 188 18 44 chr1 31417549 31417989 -211246364 - L1MB8 LINE L1 -967 5211 4761 2686 118 3 0 chr1 31417989 31418352 -211246001 - THE1B LTR MaLR 0 364 1 4683 188 18 44 chr1 31418352 31419097 -211245256 - L1MB8 LINE L1 -1417 4761 4102 3510 282 65 15 chr1 31419094 31420230 -211244123 - L1M4b LINE L1 -5666 1193 1 * 1033 269 21 65 chr1 31420310 31420738 -211243615 + MLT1I LTR MaLR 1 409 0 204 247 79 34 chr1 31420830 31420919 -211243434 + L2 LINE L2 2587 2679 -635 294 292 34 0 chr1 31421039 31421128 -211243225 - L2 LINE L2 -19 3294 3203 319 298 89 0 chr1 31421736 31421860 -211242493 - MIR SINE MIR -114 148 14 * 458 292 77 29 chr1 31421849 31422058 -211242295 - L3 LINE CR1 -79 1498 1280 5218 195 18 33 chr1 31422407 31422653 -211241700 + L1MB3 LINE L1 4013 4261 -1922 306 50 0 0 chr1 31422653 31422693 -211241660 + (CA)n Simple_repeat Simple_repeat 1 40 0 5218 195 18 33 chr1 31422693 31424522 -211239831 + L1MB3 LINE L1 4261 6044 -139 1549 224 30 8 chr1 31424529 31424890 -211239463 + MLT1A2 LTR MaLR 6 374 0 820 76 69 8 chr1 31424890 31425021 -211239332 + L1MB3 LINE L1 6041 6179 -4 207 294 44 15 chr1 31425070 31425138 -211239215 - MIR3 SINE MIR -7 201 132 351 292 164 18 chr1 31425661 31425832 -211238521 - MIR SINE MIR -34 228 33 398 286 11 51 chr1 31425877 31426055 -211238298 + MER117 DNA MER1_type 11 181 -16 807 269 144 58 chr1 31427668 31428549 -211235804 + HAL1b LINE L1 380 1336 -12 721 60 0 10 chr1 31428845 31428945 -211235408 + LOR1a LTR ERV1 1 99 -398 1075 156 0 0 chr1 31428945 31429105 -211235248 - AluSg/x SINE Alu 0 312 153 2327 156 23 0 chr1 31429107 31429499 -211234854 + LOR1a LTR ERV1 95 495 -2 3314 162 29 2 chr1 31429529 31430151 -211234202 - L1MA4 LINE L1 0 6300 5662 534 209 43 90 chr1 31431094 31431282 -211233071 + MIR SINE MIR 57 235 -27 424 289 0 63 chr1 31432060 31432219 -211232134 - MIR SINE MIR -69 193 45 185 143 0 0 chr1 31432268 31432296 -211232057 - L2 LINE L2 -217 3055 3028 224 311 98 16 chr1 31432555 31432677 -211231676 - MIR SINE MIR -10 252 121 200 33 0 33 chr1 31432765 31432795 -211231558 + (TCCCC)n Simple_repeat Simple_repeat 3 31 0 344 294 32 8 chr1 31432899 31433025 -211231328 + MIR3 SINE MIR 3 131 -77 252 360 10 0 chr1 31433374 31433474 -211230879 - MIR3 SINE MIR -3 205 105 238 261 92 31 chr1 31433703 31433833 -211230520 - MLT1K LTR MaLR -247 341 204 337 270 44 33 chr1 31433853 31433986 -211230367 - MER5A DNA MER1_type -9 169 49 325 263 18 35 chr1 31434022 31434136 -211230217 + MIR3 SINE MIR 74 185 -23 217 129 0 0 chr1 31434170 31434201 -211230152 - MIR SINE MIR -66 142 112 283 287 23 0 chr1 31434791 31434878 -211229475 + MIR SINE MIR 167 255 -7 254 333 67 0 chr1 31434962 31435052 -211229301 - MIR SINE MIR -148 114 19 409 289 138 67 chr1 31435401 31435699 -211228654 + L2 LINE L2 2855 3173 -99 2192 118 52 34 chr1 31435745 31436127 -211228226 - HERVK22 LTR ERVK -6448 389 1 3424 78 27 5 chr1 31436127 31436575 -211227778 - LTR22A LTR ERVK 0 458 1 195 129 0 0 chr1 31436576 31436607 -211227746 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 * 196 284 34 23 chr1 31436594 31436682 -211227671 - L2 LINE L2 0 3272 3184 285 320 49 17 chr1 31436977 31437233 -211227120 - L2 LINE L2 -449 2865 2600 368 186 0 0 chr1 31437562 31437632 -211226721 + MIR SINE MIR 81 150 -58 1668 196 33 84 chr1 31438102 31438555 -211225798 - MER63B DNA MER1_type -6 430 1 7890 197 61 27 chr1 31438849 31440547 -211223806 + MER52A LTR ERV1 1 1755 0 409 244 0 0 chr1 31440617 31440699 -211223654 - MER81 DNA DNA -32 82 1 212 315 39 31 chr1 31441834 31441961 -211222392 + L2 LINE L2 3177 3304 -9 377 185 62 0 chr1 31442000 31442081 -211222272 - MIR SINE MIR -98 164 79 499 214 38 9 chr1 31442497 31442657 -211221696 - MIR SINE MIR -62 146 30 200 306 0 0 chr1 31442877 31442939 -211221414 - MIR3 SINE MIR -3 205 144 501 272 78 61 chr1 31443383 31443632 -211220721 + MIR SINE MIR 5 256 -6 1554 163 8 12 chr1 31444045 31444296 -211220057 - AluSx SINE Alu -60 252 3 437 252 89 57 chr1 31444546 31444792 -211219561 + MIR SINE MIR 2 255 -7 503 342 48 0 chr1 31444828 31445056 -211219297 + MIR SINE MIR 21 259 -3 408 97 0 0 chr1 31445225 31445287 -211219066 + (CA)n Simple_repeat Simple_repeat 1 62 0 180 281 61 12 chr1 31445737 31445819 -211218534 - MIR3 SINE MIR -30 178 93 * 344 214 111 40 chr1 31445812 31445938 -211218415 + L2 LINE L2 3179 3313 0 630 318 40 8 chr1 31446273 31446525 -211217828 + MIR SINE MIR 3 262 0 247 268 31 31 chr1 31447133 31447230 -211217123 + GA-rich Low_complexity Low_complexity 1 97 0 1732 152 92 0 chr1 31447230 31447546 -211216807 - MSTB LTR MaLR -81 345 1 507 317 85 50 chr1 31447554 31447873 -211216480 + MLT1K LTR MaLR 257 586 -2 2118 92 11 21 chr1 31449431 31449755 -211214598 - AluSx SINE Alu 0 321 1 2662 251 55 13 chr1 31449942 31450654 -211213699 + L1MEc LINE L1 202 943 -5620 260 341 23 17 chr1 31450655 31450831 -211213522 + L1MEc LINE L1 1274 1450 -4934 3185 240 32 21 chr1 31450946 31451373 -211212980 + L1M4 LINE L1 2 444 -6098 294 29 0 0 chr1 31451373 31451408 -211212945 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3185 240 32 21 chr1 31451408 31451801 -211212552 + L1M4 LINE L1 444 831 -5711 1241 225 9 23 chr1 31451847 31452194 -211212159 + L1M4 LINE L1 1215 1556 -4986 238 225 67 22 chr1 31452201 31452290 -211212063 - L1MEc LINE L1 -4429 1967 1875 1644 244 47 4 chr1 31452379 31452874 -211211479 + L1M4 LINE L1 1569 2084 -4562 1049 222 24 0 chr1 31453259 31453507 -211210846 + L1MC4 LINE L1 5585 5838 -2204 992 231 75 14 chr1 31453544 31453890 -211210463 + L1M4 LINE L1 2304 2670 -4155 238 353 82 0 chr1 31453894 31454016 -211210337 - MIR SINE MIR -115 147 16 545 270 7 0 chr1 31454105 31454242 -211210111 - MIR3 SINE MIR -22 186 49 355 299 121 0 chr1 31454560 31454717 -211209636 - MIR3 SINE MIR -21 187 12 504 280 63 40 chr1 31454988 31455188 -211209165 + LTR33 LTR ERVL 24 226 -309 325 283 64 43 chr1 31455267 31455454 -211208899 + L2 LINE L2 3079 3269 -44 207 0 0 0 chr1 31455679 31455702 -211208651 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 350 290 69 0 chr1 31455704 31455835 -211208518 - L2 LINE L2 -10 3262 3123 435 314 30 96 chr1 31455957 31456397 -211207956 - MLT1K LTR MaLR -53 535 125 270 270 100 10 chr1 31456551 31456651 -211207702 - MIR SINE MIR -104 158 50 454 260 20 27 chr1 31457216 31457362 -211206991 - MIR3 SINE MIR -22 186 42 413 292 71 7 chr1 31457367 31457521 -211206832 - MIR SINE MIR -20 242 79 246 337 53 0 chr1 31457645 31457740 -211206613 + LTR33A LTR ERVL 61 160 -363 323 285 101 14 chr1 31457899 31457975 -211206378 + LTR33A LTR ERVL 299 367 -156 2505 93 0 0 chr1 31457975 31458285 -211206068 - AluSq SINE Alu -3 310 1 323 285 101 14 chr1 31458285 31458415 -211205938 + LTR33A LTR ERVL 367 523 0 445 345 47 12 chr1 31458699 31458954 -211205399 + ERVL LTR ERVL 320 583 -5181 445 211 2 4 chr1 31459210 31459312 -211205041 + ERVL LTR ERVL 3246 3327 -2327 567 148 0 101 chr1 31459312 31459461 -211204892 + LTR36 LTR ERV1 1 134 -477 954 233 125 17 chr1 31459544 31459832 -211204521 + LTR36 LTR ERV1 293 611 0 1192 211 83 40 chr1 31460097 31460495 -211203858 - MLT1C LTR MaLR 0 467 53 535 317 27 0 chr1 31460596 31460782 -211203571 + ERVL LTR ERVL 3770 3960 -1804 481 276 16 0 chr1 31461478 31461601 -211202752 + MIR3 SINE MIR 58 182 -26 526 282 46 11 chr1 31461656 31461830 -211202523 + MIR SINE MIR 83 262 0 206 279 0 49 chr1 31462869 31462991 -211201362 + (CACCC)n Simple_repeat Simple_repeat 2 117 0 * 415 224 16 38 chr1 31462918 31463185 -211201168 + CT-rich Low_complexity Low_complexity 1 261 0 203 200 32 53 chr1 31463139 31463234 -211201119 + (CACTC)n Simple_repeat Simple_repeat 3 95 0 * 191 125 25 0 chr1 31463249 31463289 -211201064 + (CACTC)n Simple_repeat Simple_repeat 3 43 0 562 236 65 63 chr1 31464104 31464488 -211199865 + MLT1L LTR MaLR 137 586 -3 278 299 23 0 chr1 31464493 31464580 -211199773 + MIR SINE MIR 55 143 -119 210 318 34 11 chr1 31464599 31464687 -211199666 + L2 LINE L2 3161 3250 -22 * 844 316 16 0 chr1 31464655 31464908 -211199445 - MIR SINE MIR 0 262 6 233 208 19 19 chr1 31464910 31464963 -211199390 + L2 LINE L2 3261 3313 0 217 239 0 0 chr1 31465769 31465815 -211198538 + L2 LINE L2 3267 3312 -1 307 260 27 0 chr1 31466415 31466488 -211197865 + MIR3 SINE MIR 119 193 -15 676 278 85 5 chr1 31466682 31466894 -211197459 + MIR SINE MIR 31 259 -3 265 269 42 93 chr1 31467235 31467428 -211196925 - L2 LINE L2 -21 3292 3110 211 350 0 0 chr1 31467474 31467554 -211196799 + (TG)n Simple_repeat Simple_repeat 1 80 0 195 42 0 0 chr1 31467574 31467598 -211196755 + (TG)n Simple_repeat Simple_repeat 2 25 0 271 284 164 9 chr1 31468078 31468194 -211196159 + L2 LINE L2 3127 3260 -12 395 200 105 0 chr1 31468737 31468832 -211195521 + MIR SINE MIR 85 189 -73 243 143 39 26 chr1 31468843 31468920 -211195433 + (TAA)n Simple_repeat Simple_repeat 3 80 0 209 277 178 50 chr1 31469000 31469101 -211195252 - MIR SINE MIR -70 192 79 298 329 77 51 chr1 31469140 31469374 -211194979 - MIR SINE MIR -10 252 13 457 313 55 10 chr1 31469393 31469594 -211194759 - L2 LINE L2 -2 3311 3102 246 287 0 70 chr1 31469989 31470118 -211194235 - L2 LINE L2 -213 3059 2940 460 286 64 0 chr1 31470201 31470341 -211194012 + MIR SINE MIR 107 255 -7 270 332 77 41 chr1 31470382 31470578 -211193775 + MIR SINE MIR 22 224 -38 345 294 39 0 chr1 31470834 31470936 -211193417 - MIR SINE MIR -77 185 80 229 261 22 87 chr1 31471238 31471330 -211193023 - MIR SINE MIR -62 146 61 1851 129 137 51 chr1 31471442 31471591 -211192762 + MSTA LTR MaLR 1 136 -292 3286 159 14 77 chr1 31471591 31472322 -211192031 + LTR8 LTR ERV1 5 689 -2 1851 129 137 51 chr1 31472322 31472566 -211191787 + MSTA LTR MaLR 136 428 0 3144 161 16 0 chr1 31472566 31473114 -211191239 + MSTA-int LTR MaLR 1 557 -1094 * 4875 143 18 9 chr1 31473111 31473876 -211190477 + MSTA-int LTR MaLR 809 1580 0 1850 168 134 11 chr1 31473876 31474257 -211190096 + MSTA LTR MaLR 1 428 0 183 250 171 0 chr1 31474277 31474353 -211190000 + L2 LINE L2 3224 3312 -1 251 361 82 0 chr1 31474369 31474491 -211189862 - MIR SINE MIR -55 207 76 419 325 91 22 chr1 31475176 31475407 -211188946 + MIR SINE MIR 1 247 -15 2757 236 116 27 chr1 31475716 31476493 -211187860 + L1M4 LINE L1 2881 3771 -2375 2424 97 3 3 chr1 31476493 31476803 -211187550 - AluY SINE Alu -1 310 1 2757 236 116 27 chr1 31476803 31477047 -211187306 + L1M4 LINE L1 3771 3992 -2154 213 162 0 0 chr1 31477869 31477906 -211186447 - MIR SINE MIR -114 148 112 320 245 41 10 chr1 31478024 31478122 -211186231 + MIR SINE MIR 150 250 -12 313 321 91 45 chr1 31478313 31478534 -211185819 + MIR SINE MIR 26 256 -6 246 315 22 22 chr1 31478946 31479038 -211185315 + L2 LINE L2 3141 3232 -40 213 343 20 10 chr1 31479134 31479236 -211185117 + MIR3 SINE MIR 78 180 -28 352 308 47 71 chr1 31482109 31482557 -211181796 - L2 LINE L2 0 3272 2836 189 0 0 0 chr1 31482726 31482747 -211181606 + (TC)n Simple_repeat Simple_repeat 1 21 0 264 314 0 35 chr1 31482795 31482881 -211181472 + C-rich Low_complexity Low_complexity 1 83 0 198 191 0 0 chr1 31482885 31482927 -211181426 + CT-rich Low_complexity Low_complexity 3 44 0 263 56 0 0 chr1 31483408 31483444 -211180909 + MADE1 DNA Mariner 45 80 0 303 286 66 6 chr1 31483652 31483834 -211180519 - L2 LINE L2 -227 3045 2853 180 77 0 0 chr1 31483949 31483975 -211180378 + (TTA)n Simple_repeat Simple_repeat 3 28 0 647 259 129 0 chr1 31483979 31484149 -211180204 - MIR SINE MIR -7 255 64 233 253 73 27 chr1 31485130 31485280 -211179073 + L2 LINE L2 2836 2992 -280 2341 97 0 10 chr1 31485355 31485655 -211178698 - AluSx SINE Alu -15 297 1 326 292 160 46 chr1 31486411 31487045 -211177308 - L2 LINE L2 -2 3270 2562 237 227 11 80 chr1 31487068 31487156 -211177197 - L2 LINE L2 -853 2461 2379 737 325 78 18 chr1 31488160 31488557 -211175796 - L2 LINE L2 0 3313 2893 956 249 126 28 chr1 31488872 31489262 -211175091 + L2 LINE L2 2886 3313 0 1193 95 23 19 chr1 31489437 31489644 -211174709 - LTR10A LTR ERV1 -21 612 362 258 300 35 4 chr1 31489663 31489871 -211174482 + L2 LINE L2 2370 2660 -654 1860 137 29 73 chr1 31489901 31490282 -211174071 - LTR10A LTR ERV1 -245 364 1 180 289 111 22 chr1 31491403 31491493 -211172860 + MIR SINE MIR 42 139 -69 210 247 214 0 chr1 31491987 31492076 -211172277 - MIR SINE MIR -63 145 38 280 328 90 8 chr1 31492199 31492321 -211172032 - MIR SINE MIR -110 152 21 381 277 188 27 chr1 31492859 31493115 -211171238 + MLT1K LTR MaLR 39 335 -253 510 17 0 0 chr1 31493181 31493240 -211171113 + (CA)n Simple_repeat Simple_repeat 2 60 0 195 188 0 0 chr1 31493340 31493388 -211170965 + G-rich Low_complexity Low_complexity 3 50 0 262 284 27 0 chr1 31493660 31493734 -211170619 - L2 LINE L2 -559 2755 2680 721 345 53 17 chr1 31493740 31494097 -211170256 - MER115 DNA AcHobo -5 688 319 2461 90 27 33 chr1 31494789 31495155 -211169198 - THE1B LTR MaLR 0 364 1 1516 206 40 20 chr1 31495155 31495504 -211168849 - MLT1A2 LTR MaLR -16 358 3 716 275 24 14 chr1 31496316 31496527 -211167826 - MIR SINE MIR -43 219 7 315 200 18 73 chr1 31496532 31496642 -211167711 - L3 LINE CR1 -77 1500 1397 453 268 70 6 chr1 31497392 31497549 -211166804 - MIR SINE MIR -79 183 17 285 231 28 83 chr1 31497572 31497680 -211166673 + MER5A DNA MER1_type 88 189 0 225 280 112 0 chr1 31497687 31497794 -211166559 - MIR SINE MIR -55 153 35 522 330 81 4 chr1 31499334 31499607 -211164746 + L1ME4a LINE L1 5629 5922 -199 288 77 0 0 chr1 31499641 31499680 -211164673 + (ATG)n Simple_repeat Simple_repeat 2 40 0 529 242 98 61 chr1 31499693 31499926 -211164427 - MIR SINE MIR -13 249 1 414 0 0 0 chr1 31501567 31501613 -211162740 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 513 303 76 10 chr1 31501617 31501815 -211162538 - L2 LINE L2 -25 3288 3078 277 302 15 38 chr1 31502363 31502505 -211161848 - MIR SINE MIR -73 135 17 309 315 22 12 chr1 31502598 31502764 -211161589 - MIR SINE MIR -18 244 76 575 301 27 16 chr1 31502951 31503134 -211161219 - MIR SINE MIR -50 212 28 460 262 21 14 chr1 31503270 31503411 -211160942 + MIR SINE MIR 51 192 -70 303 369 37 28 chr1 31503421 31503635 -211160718 + L2 LINE L2 3098 3313 0 438 185 0 0 chr1 31504485 31504577 -211159776 + L2 LINE L2 2891 2982 -331 185 298 18 0 chr1 31504599 31504656 -211159697 + L3 LINE CR1 1517 1574 -3 346 293 23 38 chr1 31505296 31505429 -211158924 - MIR SINE MIR -108 154 24 1612 99 9 9 chr1 31506297 31506530 -211157823 + L1PB1 LINE L1 5919 6151 0 185 0 40 0 chr1 31506562 31506587 -211157766 + (CAA)n Simple_repeat Simple_repeat 2 27 0 607 255 158 60 chr1 31506650 31507030 -211157323 - MLT1H LTR MaLR 0 549 133 557 204 76 0 chr1 31507219 31507239 -211157114 - L1MA10 LINE L1 -3 6331 6312 2537 245 60 47 chr1 31507239 31508173 -211156180 - L1ME1 LINE L1 -21 6145 5199 230 56 28 0 chr1 31508287 31508323 -211156030 + (TAA)n Simple_repeat Simple_repeat 2 38 0 504 296 19 0 chr1 31509501 31509660 -211154693 + MIR SINE MIR 94 255 -7 2056 71 0 4 chr1 31509741 31510010 -211154343 - AluY SINE Alu 0 311 44 673 330 66 30 chr1 31510369 31510796 -211153557 - L2 LINE L2 -5 3267 2826 2232 101 0 0 chr1 31511568 31511864 -211152489 + AluSg1 SINE Alu 1 296 -13 1796 173 3 3 chr1 31512051 31512363 -211151990 - AluJo SINE Alu 0 312 1 1344 194 12 98 chr1 31512541 31512771 -211151582 + MLT1A1 LTR MaLR 1 101 -264 2118 126 7 0 chr1 31512771 31513080 -211151273 - AluSx SINE Alu -1 311 1 1344 194 12 98 chr1 31513080 31513324 -211151029 + MLT1A1 LTR MaLR 101 365 0 587 309 21 0 chr1 31513414 31513608 -211150745 + MIR3 SINE MIR 11 208 0 537 274 56 28 chr1 31514122 31514301 -211150052 - MIR SINE MIR -21 241 58 949 299 47 57 chr1 31514569 31514991 -211149362 + MLT1K LTR MaLR 13 430 -158 217 282 77 13 chr1 31515015 31515093 -211149260 + L2 LINE L2 3193 3275 -38 534 239 0 36 chr1 31515096 31515234 -211149119 + MLT1K LTR MaLR 445 577 -11 210 346 0 12 chr1 31515236 31515317 -211149036 + L2 LINE L2 3192 3271 -1 380 291 140 1 chr1 31515705 31515729 -211148624 + MIR SINE MIR 43 62 -200 365 119 0 0 chr1 31515729 31515788 -211148565 - L1MA4A LINE L1 -5 6298 6240 380 291 140 1 chr1 31515788 31515935 -211148418 + MIR SINE MIR 62 236 -26 322 282 60 27 chr1 31516387 31516536 -211147817 - MIR SINE MIR -52 156 3 349 169 0 0 chr1 31517476 31517535 -211146818 - MER96 DNA MER1_type? -113 62 4 514 342 104 17 chr1 31517592 31518287 -211146066 - L2 LINE L2 0 3313 2556 278 323 46 15 chr1 31518309 31518439 -211145914 - L2 LINE L2 0 3313 3180 205 222 111 14 chr1 31518813 31518885 -211145468 - MIR SINE MIR -116 146 68 248 305 8 62 chr1 31519012 31519140 -211145213 - MIR SINE MIR -3 259 139 460 292 172 12 chr1 31519336 31519586 -211144767 - MLT1H LTR MaLR -255 294 5 334 299 0 10 chr1 31519586 31519683 -211144670 - MIR SINE MIR -68 140 45 228 163 0 0 chr1 31519949 31519992 -211144361 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 290 198 110 33 chr1 31520049 31520140 -211144213 + L2 LINE L2 2986 3083 -189 181 366 37 30 chr1 31520294 31520428 -211143925 + L2 LINE L2 3137 3271 -1 229 182 0 36 chr1 31520430 31520485 -211143868 + GA-rich Low_complexity Low_complexity 1 53 0 210 182 182 0 chr1 31521104 31521159 -211143194 + MER5A DNA MER1_type 30 94 -95 409 289 37 15 chr1 31521391 31521526 -211142827 + MIR SINE MIR 71 208 -54 398 330 48 24 chr1 31521677 31521886 -211142467 + L2 LINE L2 3100 3313 0 591 251 126 52 chr1 31521904 31522287 -211142066 - MLT1J2 LTR MaLR -1 449 75 232 297 198 0 chr1 31522804 31522915 -211141438 + L2 LINE L2 3138 3270 -2 1854 243 80 21 chr1 31523072 31523557 -211140796 + MLT1E LTR MaLR 80 593 0 286 273 189 8 chr1 31523557 31523689 -211140664 - MIR SINE MIR -67 195 40 202 348 22 22 chr1 31524343 31524435 -211139918 + MIR3 SINE MIR 65 156 -52 503 332 126 0 chr1 31524875 31525065 -211139288 - MIR SINE MIR -1 261 48 2291 139 34 0 chr1 31525219 31525571 -211138782 + THE1B LTR MaLR 1 364 0 533 284 97 45 chr1 31526431 31526741 -211137612 + MER115 DNA AcHobo 1 326 -367 2339 129 117 8 chr1 31527397 31527783 -211136570 - MSTA LTR MaLR 0 428 1 786 209 88 38 chr1 31528153 31528416 -211135937 + LTR33 LTR ERVL 10 285 -236 293 305 105 15 chr1 31528459 31528659 -211135694 - L2 LINE L2 -535 2779 2562 464 230 46 82 chr1 31529117 31529312 -211135041 + MIR SINE MIR 34 227 -35 364 324 95 46 chr1 31530305 31530672 -211133681 - L2 LINE L2 -1 3312 2928 201 280 16 80 chr1 31530684 31530809 -211133544 - L2 LINE L2 -177 3095 2979 282 330 171 6 chr1 31531964 31532140 -211132213 - MIR SINE MIR -50 212 8 193 371 64 21 chr1 31532240 31532380 -211131973 + MIR SINE MIR 113 258 -4 698 237 0 68 chr1 31532715 31532905 -211131448 - MLT1J1 LTR MaLR -262 184 8 239 342 26 0 chr1 31532911 31532987 -211131366 - MIR SINE MIR -90 118 41 399 271 126 25 chr1 31533547 31533746 -211130607 + L1ME LINE L1 5596 5814 -307 401 237 62 10 chr1 31534043 31534171 -211130182 - MLT1H LTR MaLR 0 549 410 463 283 73 43 chr1 31534195 31534245 -211130108 - MLT1H LTR MaLR -287 262 215 2244 81 0 26 chr1 31534245 31534554 -211129799 - AluY SINE Alu -5 306 6 463 283 73 43 chr1 31534554 31534736 -211129617 - MLT1H LTR MaLR -334 215 23 231 367 9 0 chr1 31535112 31535221 -211129132 - L1MC/D LINE L1 -2002 5806 5697 563 310 34 17 chr1 31535248 31535487 -211128866 - MIR SINE MIR -17 245 3 418 305 64 0 chr1 31535488 31535629 -211128724 - L1MC/D LINE L1 -441 5680 5531 408 362 111 15 chr1 31535641 31536122 -211128231 - L2 LINE L2 -27 3286 2751 1724 231 21 56 chr1 31536134 31536210 -211128143 - MER69 DNA AcHobo -5 2521 2444 2435 71 0 0 chr1 31536210 31536518 -211127835 + AluY SINE Alu 1 308 -3 1724 231 21 56 chr1 31536518 31537046 -211127307 - MER69 DNA AcHobo -82 2444 1938 371 272 26 0 chr1 31537028 31537142 -211127211 - MER69 DNA AcHobo -1109 117 1 * 3378 164 46 0 chr1 31537953 31538537 -211125816 + LTR31 LTR ERV1 9 619 0 723 171 0 0 chr1 31538881 31538992 -211125361 - FLAM_C SINE Alu -30 113 3 403 184 35 0 chr1 31538992 31539079 -211125274 - L1M4 LINE L1 -1384 4762 4673 769 165 0 79 chr1 31539114 31539278 -211125075 + MLT1C LTR MaLR 1 151 -239 2624 92 0 40 chr1 31539288 31539658 -211124695 - THE1A LTR MaLR 0 355 1 11912 95 1 0 chr1 31539658 31541216 -211123137 - THE1A-int LTR MaLR 0 1580 21 2487 122 3 0 chr1 31541221 31541575 -211122778 - THE1A LTR MaLR 0 355 1 2401 137 70 10 chr1 31541582 31541984 -211122369 - MSTB LTR MaLR 0 426 1 1395 214 54 0 chr1 31541984 31542279 -211122074 + MLT1C LTR MaLR 157 467 0 1394 165 23 3 chr1 31542288 31542555 -211121798 - MLT1A1 LTR MaLR -4 361 1 657 287 37 19 chr1 31542707 31543028 -211121325 - L2 LINE L2 -583 2731 2405 235 191 16 48 chr1 31543043 31543106 -211121247 - LTR15 LTR ERV1 -99 394 334 2118 112 11 3 chr1 31544785 31545071 -211119282 + AluSx SINE Alu 1 288 -24 425 260 0 19 chr1 31545932 31546036 -211118317 - MIR3 SINE MIR -15 193 92 458 245 134 53 chr1 31546091 31546451 -211117902 - MLT1H LTR MaLR -16 533 42 431 297 66 19 chr1 31546672 31546884 -211117469 + HAL1b LINE L1 566 787 -561 2442 78 0 0 chr1 31547121 31547417 -211116936 + AluY SINE Alu 1 296 -15 2321 147 65 5 chr1 31547770 31548172 -211116181 + MSTA LTR MaLR 1 426 -2 9635 171 19 4 chr1 31548174 31549796 -211114557 + MSTA-int LTR MaLR 1 1645 -6 682 110 31 1 chr1 31549802 31549912 -211114441 + MSTA LTR MaLR 1 113 -313 250 214 0 0 chr1 31549922 31549978 -211114375 + L1ME LINE L1 5382 5437 -684 1621 133 105 0 chr1 31550024 31550309 -211114044 + MSTA LTR MaLR 114 428 0 5263 118 16 9 chr1 31550728 31551502 -211112851 - MER4E LTR ERV1 0 779 1 8281 94 15 1 chr1 31551967 31553904 -211110449 - L1PA7 LINE L1 -5 6149 4196 219 36 0 0 chr1 31554070 31554098 -211110255 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 236 337 94 33 chr1 31554379 31554718 -211109635 + L1ME LINE L1 5445 5806 -315 291 271 114 7 chr1 31555400 31555540 -211108813 - MIR SINE MIR -44 218 64 820 278 137 37 chr1 31555576 31556549 -211107804 + L1MD2 LINE L1 4400 5452 -712 375 305 44 1 chr1 31556550 31556678 -211107675 + L1MD2 LINE L1 5524 5656 -522 2192 132 0 0 chr1 31556794 31557090 -211107263 + AluSx SINE Alu 1 296 -16 475 260 104 6 chr1 31557208 31557381 -211106972 + MIR SINE MIR 33 222 -40 779 248 57 76 chr1 31557390 31557470 -211106883 + L1MD2 LINE L1 6050 6130 -229 215 61 30 0 chr1 31557470 31557503 -211106850 + (CA)n Simple_repeat Simple_repeat 1 34 0 779 248 57 76 chr1 31557503 31557736 -211106617 + L1MD2 LINE L1 6130 6357 -2 602 235 41 6 chr1 31557877 31558047 -211106306 - MIR SINE MIR -86 176 1 23 78 0 0 chr1 31558076 31558127 -211106226 + AT_rich Low_complexity Low_complexity 1 51 0 320 204 11 23 chr1 31558789 31558877 -211105476 + LTR16A LTR ERVL 326 412 -38 433 281 0 37 chr1 31559939 31560074 -211104279 + L2 LINE L2 3142 3271 -1 399 258 116 11 chr1 31560086 31560276 -211104077 - MIR SINE MIR -14 248 39 190 383 21 0 chr1 31561437 31561531 -211102822 - L2 LINE L2 -529 2785 2690 2088 115 30 0 chr1 31562049 31562345 -211102008 - AluSx SINE Alu -7 305 1 265 267 27 0 chr1 31562348 31562423 -211101930 - MIR SINE MIR -81 181 105 220 308 19 28 chr1 31562439 31562546 -211101807 - MIR3 SINE MIR -10 198 93 208 250 69 28 chr1 31562586 31562658 -211101695 - L2 LINE L2 -56 3257 3183 5088 231 49 49 chr1 31562902 31564017 -211100336 - L1M4 LINE L1 -1216 4930 3816 2201 117 3 19 chr1 31564017 31564333 -211100020 - AluSp SINE Alu -2 311 1 5088 231 49 49 chr1 31564333 31564473 -211099880 - L1M4 LINE L1 -2330 3816 3677 1140 173 48 122 chr1 31564473 31564867 -211099486 - MLT1A1 LTR MaLR 0 365 1 5088 231 49 49 chr1 31564867 31565024 -211099329 - L1M4 LINE L1 -2469 3677 3521 1853 149 19 23 chr1 31565024 31565332 -211099021 - AluJo SINE Alu -5 307 1 5088 231 49 49 chr1 31565332 31565591 -211098762 - L1M4 LINE L1 -2624 3522 3257 634 174 30 8 chr1 31565788 31565920 -211098433 + MLT1C LTR MaLR 324 458 -9 198 300 17 17 chr1 31566567 31566627 -211097726 - MIR SINE MIR -61 147 88 313 310 59 15 chr1 31566649 31566852 -211097501 + MIR SINE MIR 32 243 -19 798 301 27 49 chr1 31567018 31567292 -211097061 + MERVL LTR ERVL 4903 5167 -318 2026 154 7 0 chr1 31567292 31567598 -211096755 - AluSx SINE Alu -2 310 3 798 301 27 49 chr1 31567598 31567729 -211096624 + MERVL LTR ERVL 5167 5299 -186 277 294 9 28 chr1 31567940 31568049 -211096304 + MERVL LTR ERVL 5581 5687 -77 337 237 0 11 chr1 31568130 31568223 -211096130 + LTR41 LTR ERVL 1 92 -681 378 226 104 0 chr1 31568511 31568626 -211095727 - MIR SINE MIR -83 179 53 224 275 14 14 chr1 31568797 31568866 -211095487 - L2 LINE L2 -1 3312 3244 21 36 0 0 chr1 31568950 31568978 -211095375 + AT_rich Low_complexity Low_complexity 1 28 0 4058 274 71 35 chr1 31569513 31572504 -211091849 + L1MEc LINE L1 3 5231 -984 300 305 30 0 chr1 31573245 31573376 -211090977 + MIR SINE MIR 8 142 -120 224 254 0 0 chr1 31573911 31573974 -211090379 + L3b LINE CR1 1322 1384 -199 886 265 24 28 chr1 31574041 31574290 -211090063 - MIR SINE MIR 0 262 15 1306 158 9 22 chr1 31575249 31575471 -211088882 + MLT1D LTR MaLR 1 219 -286 832 160 0 13 chr1 31575477 31575627 -211088726 - MER65A LTR ERV1 0 445 298 333 244 13 39 chr1 31575628 31575706 -211088647 - MER31-int LTR ERV1 -977 3959 3884 1192 47 0 20 chr1 31575706 31575854 -211088499 - AluYa5 SINE Alu -8 303 159 1932 102 17 3 chr1 31575954 31576247 -211088106 + L1P LINE L1 4764 5060 -1086 957 218 137 46 chr1 31576251 31577047 -211087306 - L1M4 LINE L1 -1089 5126 4209 6677 72 8 12 chr1 31577050 31578430 -211085923 + L1PA7 LINE L1 4773 6150 -4 297 129 0 86 chr1 31578439 31578464 -211085889 + MLT2C2 LTR ERVL 401 427 -37 336 24 0 0 chr1 31578464 31578505 -211085848 + (CA)n Simple_repeat Simple_repeat 1 41 0 297 129 0 86 chr1 31578505 31578549 -211085804 + MLT2C2 LTR ERVL 427 464 0 10525 120 4 16 chr1 31579472 31581077 -211083276 + HERVH LTR ERV1 1245 2830 -4883 4098 184 14 34 chr1 31581077 31582219 -211082134 + HERVH LTR ERV1 3357 4719 -1935 273 29 0 0 chr1 31582219 31582253 -211082100 + (A)n Simple_repeat Simple_repeat 1 34 0 929 115 0 0 chr1 31582253 31582392 -211081961 + HERVH LTR ERV1 4414 4552 -3161 * 1684 130 0 0 chr1 31582382 31582643 -211081710 + HERVH LTR ERV1 5756 6016 -1697 * 3638 116 18 9 chr1 31582636 31583188 -211081165 + HERVH LTR ERV1 7157 7713 0 808 165 114 47 chr1 31583188 31583572 -211080781 + LTR7 LTR ERV1 1 450 0 2971 227 42 21 chr1 31583572 31583594 -211080759 - L1MEc LINE L1 -3570 2645 2625 4386 132 47 41 chr1 31583594 31584053 -211080300 + MER4E LTR ERV1 1 467 -312 2298 95 0 7 chr1 31584053 31584348 -211080005 - AluSc SINE Alu -16 293 1 4386 132 47 41 chr1 31584348 31584663 -211079690 + MER4E LTR ERV1 467 779 0 2971 227 42 21 chr1 31584663 31584919 -211079434 - L1MEc LINE L1 -3590 2625 2376 1829 180 7 0 chr1 31584919 31585225 -211079128 - AluJb SINE Alu -4 308 1 2971 227 42 21 chr1 31585225 31585934 -211078419 - L1MEc LINE L1 -3839 2376 1677 301 270 87 9 chr1 31585945 31586060 -211078293 + L1MDa LINE L1 1548 1666 -4864 2372 140 65 30 chr1 31586096 31586608 -211077745 + MLT2A2 LTR ERVL 1 554 0 501 242 132 21 chr1 31586647 31586837 -211077516 + L1MDa LINE L1 1582 1792 -4748 785 222 11 16 chr1 31586847 31587032 -211077321 - L1MEc LINE L1 -6177 219 36 305 300 31 23 chr1 31587047 31587177 -211077176 + L2 LINE L2 3165 3295 -18 2356 89 3 7 chr1 31587285 31587587 -211076766 + AluSp SINE Alu 12 312 -1 605 255 100 22 chr1 31587805 31588036 -211076317 + MLT1J LTR MaLR 24 272 -239 206 152 0 0 chr1 31589145 31589178 -211075175 + MIR SINE MIR 117 149 -113 244 215 77 15 chr1 31589574 31589639 -211074714 - MIR SINE MIR -37 225 157 2343 104 3 3 chr1 31589773 31590080 -211074273 + AluSq SINE Alu 1 307 -6 318 320 0 0 chr1 31590898 31591135 -211073218 + (CA)n Simple_repeat Simple_repeat 1 237 0 380 303 6 0 chr1 31591173 31591351 -211073002 + (CA)n Simple_repeat Simple_repeat 2 180 0 325 292 0 18 chr1 31591372 31591540 -211072813 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 2318 106 0 3 chr1 31591766 31592067 -211072286 - AluSq SINE Alu -13 300 1 1845 191 57 9 chr1 31592457 31592880 -211071473 + MER65A LTR ERV1 1 443 -2 2520 259 169 25 chr1 31593112 31593338 -211071015 - L2 LINE L2 -7 3306 3114 1979 120 0 34 chr1 31593338 31593650 -211070703 + AluSx SINE Alu 1 302 0 2520 259 169 25 chr1 31593650 31594971 -211069382 - L2 LINE L2 -199 3114 1530 296 307 125 35 chr1 31595081 31595456 -211068897 - L1MC4a LINE L1 -254 5867 5520 1144 219 66 38 chr1 31595853 31596141 -211068212 - MLT2B3 LTR ERVL -4 550 255 729 169 174 0 chr1 31596144 31596316 -211068037 + L1M4c LINE L1 625 826 -5558 2248 216 28 80 chr1 31596316 31596620 -211067733 - L1M4c LINE L1 -5776 608 351 2096 116 0 24 chr1 31596620 31596914 -211067439 - AluSq SINE Alu -26 287 1 2248 216 28 80 chr1 31596914 31597221 -211067132 - L1M4c LINE L1 -6033 351 29 217 298 0 0 chr1 31597229 31597286 -211067067 + MIR SINE MIR 85 141 -67 904 109 19 13 chr1 31597294 31597450 -211066903 + L1MA8 LINE L1 6129 6285 -6 436 273 154 55 chr1 31597821 31598165 -211066188 + MLT1K LTR MaLR 205 582 -6 432 324 28 0 chr1 31598581 31598726 -211065627 - MIR3 SINE MIR -24 184 36 360 327 54 0 chr1 31599455 31599623 -211064730 - MIR SINE MIR -7 255 79 355 280 19 43 chr1 31600546 31600661 -211063692 + MIR SINE MIR 43 153 -62 300 315 114 0 chr1 31600721 31600870 -211063483 + MIR SINE MIR 97 262 0 414 261 35 12 chr1 31601590 31601771 -211062582 - MIR SINE MIR -63 145 7 380 255 26 46 chr1 31601802 31601955 -211062398 - MIR SINE MIR -78 184 35 317 264 0 12 chr1 31602992 31603084 -211061269 + MIR SINE MIR 50 140 -68 247 298 144 10 chr1 31603151 31603255 -211061098 + L2 LINE L2 3155 3272 0 5141 111 0 21 chr1 31603872 31604641 -211059712 + LTR17 LTR ERV1 1 753 -27 514 185 11 0 chr1 31604641 31604733 -211059620 + LTR17 LTR ERV1 688 780 0 560 177 0 24 chr1 31606058 31606182 -211058171 - MER63 DNA MER1_type -33 1029 909 1051 251 27 8 chr1 31606198 31606444 -211057909 - MER63 DNA MER1_type -118 944 694 642 247 14 82 chr1 31606444 31606735 -211057618 - LTR41 LTR ERVL 0 773 503 553 254 36 53 chr1 31606868 31607080 -211057273 - LTR41 LTR ERVL -556 239 1 458 218 9 9 chr1 31607238 31607348 -211057005 - MIR SINE MIR -51 211 102 556 332 203 8 chr1 31607404 31607778 -211056575 - L3 LINE CR1 -88 1489 1043 182 321 19 0 chr1 31608034 31608087 -211056266 - MIR SINE MIR -136 72 19 210 270 176 0 chr1 31608861 31608935 -211055418 + L2 LINE L2 3225 3311 -2 1935 204 226 26 chr1 31609468 31610013 -211054340 - MLT1E1 LTR MaLR 0 654 1 873 249 101 21 chr1 31610346 31610683 -211053670 - MLT1A1 LTR MaLR 0 365 2 201 213 85 0 chr1 31611419 31611466 -211052887 + MIR SINE MIR 76 126 -82 1563 261 130 42 chr1 31611850 31611921 -211052432 - L1MCc LINE L1 -4191 2931 2868 2330 137 64 15 chr1 31611921 31612329 -211052024 - MSTA LTR MaLR 0 428 1 1563 261 130 42 chr1 31612329 31613749 -211050604 - L1MCc LINE L1 -4254 2868 1073 287 245 129 27 chr1 31614216 31614363 -211049990 - L1MCc LINE L1 -6005 418 257 2010 96 12 23 chr1 31614377 31614500 -211049853 + MER4A LTR ERV1 1 124 -540 183 42 0 0 chr1 31614500 31614524 -211049829 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2010 96 12 23 chr1 31614524 31614914 -211049439 + MER4A LTR ERV1 124 660 -4 275 261 17 50 chr1 31614951 31615070 -211049283 - L1MCa LINE L1 -6227 199 85 481 301 51 0 chr1 31615252 31615408 -211048945 + MIR3 SINE MIR 30 193 -15 193 253 40 0 chr1 31615832 31615907 -211048446 + L2 LINE L2 3108 3185 -128 1154 286 95 16 chr1 31615949 31616660 -211047693 - L2 LINE L2 -1 3312 2543 333 252 49 64 chr1 31617429 31617574 -211046779 + MIR3 SINE MIR 48 193 -15 351 258 128 20 chr1 31617742 31617922 -211046431 - MIR SINE MIR -48 214 15 951 302 82 3 chr1 31618972 31619277 -211045076 + LTR16C LTR ERVL 1 329 -162 926 288 135 31 chr1 31619560 31619894 -211044459 + L1ME3A LINE L1 5555 5950 -220 2120 121 3 7 chr1 31619894 31620192 -211044161 + AluSx SINE Alu 1 297 -15 926 288 135 31 chr1 31620192 31620309 -211044044 + L1ME3A LINE L1 5950 6053 -117 331 290 8 8 chr1 31620497 31620621 -211043732 + (TGAA)n Simple_repeat Simple_repeat 1 124 0 218 267 13 13 chr1 31620674 31620749 -211043604 + GA-rich Low_complexity Low_complexity 2 76 0 204 270 32 16 chr1 31621404 31621467 -211042886 + MIR SINE MIR 88 151 -57 414 0 0 0 chr1 31621535 31621581 -211042772 + (CA)n Simple_repeat Simple_repeat 2 47 0 272 233 78 58 chr1 31621657 31621760 -211042593 + L2 LINE L2 3168 3272 0 298 286 98 60 chr1 31623307 31623461 -211040892 + MIR SINE MIR 20 188 -74 811 174 71 47 chr1 31623461 31623673 -211040680 - MER20 DNA MER1_type 0 219 3 298 286 98 60 chr1 31623673 31623752 -211040601 + MIR SINE MIR 188 262 0 285 262 36 9 chr1 31623994 31624130 -211040223 - MIR SINE MIR -24 238 97 355 278 63 8 chr1 31624163 31624289 -211040064 - L2 LINE L2 -64 3249 3117 366 23 0 0 chr1 31624457 31624500 -211039853 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 307 241 27 62 chr1 31624813 31624925 -211039428 - MIR SINE MIR -71 137 30 * 451 254 21 98 chr1 31624907 31625100 -211039253 + MIR SINE MIR 59 236 -26 282 200 19 124 chr1 31625199 31625304 -211039049 - MIR SINE MIR -111 151 58 384 289 83 13 chr1 31625845 31626129 -211038224 - L1M4c LINE L1 -862 1881 1377 369 199 0 193 chr1 31626252 31626329 -211038024 - MIR SINE MIR -21 241 209 2108 116 56 0 chr1 31626329 31626613 -211037740 - AluSx SINE Alu -8 304 5 369 199 0 193 chr1 31626613 31626696 -211037657 - MIR SINE MIR -53 209 112 418 314 0 15 chr1 31626731 31626868 -211037485 + MIR3 SINE MIR 15 149 -59 1785 155 0 54 chr1 31627596 31627912 -211036441 - AluJb SINE Alu -13 299 1 220 319 92 0 chr1 31628887 31629006 -211035347 - L2 LINE L2 -10 3262 3133 260 270 185 25 chr1 31629241 31629641 -211034712 - L2 LINE L2 -340 2974 2511 819 264 12 49 chr1 31630298 31630544 -211033809 - MIR SINE MIR -6 256 20 253 349 55 7 chr1 31630700 31630846 -211033507 - MIR SINE MIR -77 185 33 330 324 54 32 chr1 31630849 31631034 -211033319 - MIR SINE MIR -61 201 13 568 296 39 5 chr1 31631159 31631365 -211032988 - MIR SINE MIR -48 214 2 385 250 105 16 chr1 31632134 31632258 -211032095 + MIR SINE MIR 108 242 -20 209 360 0 0 chr1 31632402 31632477 -211031876 - MIR SINE MIR -69 193 119 1215 268 129 24 chr1 31632588 31633140 -211031213 + MLT1L LTR MaLR 2 611 -4 501 17 0 0 chr1 31633330 31633388 -211030965 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 2108 140 7 0 chr1 31634466 31634766 -211029587 + AluSx SINE Alu 1 302 -10 364 315 0 34 chr1 31635096 31635137 -211029216 + MIR SINE MIR 30 71 -191 2400 225 14 20 chr1 31635137 31635696 -211028657 + LTR38 LTR ERV1 1 556 0 364 315 0 34 chr1 31635696 31635800 -211028553 + MIR SINE MIR 71 170 -92 197 261 0 17 chr1 31635884 31635988 -211028365 + (ATG)n Simple_repeat Simple_repeat 2 105 -13 2668 124 21 2 chr1 31635988 31636408 -211027945 - MSTA LTR MaLR 0 428 1 197 261 0 17 chr1 31636408 31636422 -211027931 + (ATG)n Simple_repeat Simple_repeat 105 118 0 208 299 75 8 chr1 31636740 31636874 -211027479 + MIR SINE MIR 61 203 -59 228 286 0 0 chr1 31637158 31637214 -211027139 + (TG)n Simple_repeat Simple_repeat 1 56 0 245 254 0 18 chr1 31637697 31637752 -211026601 + polypurine Low_complexity Low_complexity 2 55 0 227 128 0 0 chr1 31637760 31637799 -211026554 - MER31A LTR ERV1 0 485 447 291 109 0 0 chr1 31637826 31637872 -211026481 - MER31A LTR ERV1 -21 464 419 207 299 23 35 chr1 31638788 31638875 -211025478 - MIR3 SINE MIR -11 197 112 271 299 23 35 chr1 31639180 31639267 -211025086 - MIR SINE MIR -164 98 13 856 231 105 10 chr1 31639292 31639586 -211024767 + MER33 DNA MER1_type 2 323 -1 350 248 139 0 chr1 31639905 31640006 -211024347 - MIR SINE MIR -105 157 43 195 269 57 99 chr1 31640563 31640846 -211023507 - L2 LINE L2 -189 3083 2813 505 333 38 30 chr1 31640933 31641003 -211023350 - MIR SINE MIR -6 256 188 2253 125 0 0 chr1 31641003 31641314 -211023039 - AluSx SINE Alu -1 311 1 505 333 38 30 chr1 31641314 31641480 -211022873 - MIR SINE MIR -74 188 18 180 0 0 0 chr1 31641979 31641999 -211022354 + (TTAGGG)n Simple_repeat Simple_repeat 3 22 0 197 362 43 11 chr1 31642168 31642262 -211022091 + L3 LINE CR1 433 529 -1048 343 270 16 63 chr1 31642357 31642483 -211021870 - MER5A DNA MER1_type -24 165 46 2024 137 56 8 chr1 31642578 31642936 -211021417 - THE1C LTR MaLR 0 375 1 217 196 71 0 chr1 31643168 31643224 -211021129 - L2 LINE L2 0 3272 3213 202 300 50 12 chr1 31643351 31643431 -211020922 + L3 LINE CR1 1181 1263 -314 803 296 119 21 chr1 31643487 31643865 -211020488 - L2 LINE L2 -5 3267 2853 522 291 33 23 chr1 31643986 31644158 -211020195 + MIR SINE MIR 7 178 -61 343 278 51 0 chr1 31644966 31645282 -211019071 + (CCTA)n Simple_repeat Simple_repeat 1 331 0 477 343 65 5 chr1 31645489 31645705 -211018648 + MIR SINE MIR 13 241 -21 447 244 148 7 chr1 31645761 31645896 -211018457 + MIR SINE MIR 37 190 -72 205 170 19 38 chr1 31646320 31646373 -211017980 + GA-rich Low_complexity Low_complexity 4 55 0 337 298 106 0 chr1 31646570 31646721 -211017632 + MIR3 SINE MIR 22 188 -20 349 275 48 121 chr1 31647203 31647665 -211016688 + L2 LINE L2 2832 3259 -13 7152 179 127 124 chr1 31647931 31649750 -211014603 - MER52A LTR ERV1 0 1755 1 333 310 108 44 chr1 31649805 31650241 -211014112 + L2 LINE L2 2809 3272 0 658 257 34 17 chr1 31650257 31650432 -211013921 - MIR SINE MIR -12 250 73 341 331 38 8 chr1 31651258 31651391 -211012962 + MIR3 SINE MIR 18 154 -54 1308 220 59 30 chr1 31651504 31651877 -211012476 + MLT1B LTR MaLR 1 384 -6 445 74 0 25 chr1 31652312 31652393 -211011960 + (TG)n Simple_repeat Simple_repeat 2 80 0 324 154 26 115 chr1 31652630 31652708 -211011645 - L2 LINE L2 -38 3275 3205 677 294 114 13 chr1 31652716 31652944 -211011409 - MIR SINE MIR -6 256 6 424 263 140 39 chr1 31653122 31653301 -211011052 - MIR SINE MIR -51 211 15 3114 210 46 4 chr1 31653728 31654467 -211009886 + L1MDb LINE L1 653 1422 -4987 260 240 0 0 chr1 31654522 31654572 -211009781 + Tigger5 DNA MER2_type 2270 2319 -4 386 215 0 13 chr1 31654573 31654652 -211009701 - Tigger5 DNA MER2_type -2245 78 1 3015 207 71 44 chr1 31654652 31654805 -211009548 + L1MDb LINE L1 1430 1577 -4829 1643 191 10 7 chr1 31654805 31655099 -211009254 + AluJo SINE Alu 7 301 -11 3015 207 71 44 chr1 31655099 31656039 -211008314 + L1MDb LINE L1 1577 2552 -3854 308 263 11 0 chr1 31656054 31656149 -211008204 + L1MDb LINE L1 2666 2761 -3645 2428 252 25 6 chr1 31656150 31656879 -211007474 + L1M4 LINE L1 4558 5300 -846 1612 231 44 29 chr1 31656896 31657212 -211007141 + L1MCa LINE L1 159 486 -6078 1616 95 36 0 chr1 31657212 31657434 -211006919 - MER30 DNA MER1_type 0 230 1 1612 231 44 29 chr1 31657434 31657597 -211006756 + L1MCa LINE L1 486 645 -5919 1550 202 28 2 chr1 31657622 31657994 -211006359 + L1MCa LINE L1 606 995 -5070 215 281 70 0 chr1 31659131 31659188 -211005165 + MIR SINE MIR 197 257 -5 496 316 32 6 chr1 31659356 31659514 -211004839 + MIR SINE MIR 20 181 -81 408 325 0 8 chr1 31659557 31659677 -211004676 - MIR SINE MIR -109 153 35 355 313 30 8 chr1 31659911 31660045 -211004308 - MIR SINE MIR -112 150 14 * 379 290 80 35 chr1 31660043 31660243 -211004110 - MIR SINE MIR -22 240 32 273 279 35 0 chr1 31661783 31661869 -211002484 - MIR SINE MIR -79 129 41 304 280 35 77 chr1 31661934 31662077 -211002276 - MIR3 SINE MIR -71 137 1 513 218 143 20 chr1 31662197 31662344 -211002009 - MIR SINE MIR -14 248 84 514 234 127 6 chr1 31662363 31662521 -211001832 + LTR41 LTR ERVL 1 177 -596 593 231 6 26 chr1 31662777 31662933 -211001420 + LTR41 LTR ERVL 608 760 -13 281 284 52 17 chr1 31663437 31663553 -211000800 + ERVL LTR ERVL 578 697 -5067 734 323 72 17 chr1 31663593 31664054 -211000299 + ERVL LTR ERVL 850 1335 -4429 416 316 94 37 chr1 31664103 31664400 -210999953 + ERVL LTR ERVL 1404 1717 -4047 763 291 75 16 chr1 31664441 31664761 -210999592 + ERVL LTR ERVL 1803 2141 -3623 287 148 0 0 chr1 31664768 31664822 -210999531 + LTR33 LTR ERVL 415 468 -53 354 265 20 10 chr1 31664829 31664927 -210999426 + L1MC3 LINE L1 194 292 -5753 2342 205 28 61 chr1 31665028 31665413 -210998940 + L1MC3 LINE L1 500 896 -5436 1911 160 3 40 chr1 31665413 31665763 -210998590 - MER44D DNA MER2_type -2 607 1 2342 205 28 61 chr1 31665763 31666377 -210997976 + L1MC3 LINE L1 896 1480 -4852 11899 183 30 26 chr1 31666377 31668948 -210995405 + L1MC3 LINE L1 5269 7849 -354 2588 121 8 13 chr1 31668948 31669328 -210995025 + MER83B LTR ERV1 1 378 0 11899 183 30 26 chr1 31669328 31669685 -210994668 + L1MC3 LINE L1 7849 8203 0 313 341 53 31 chr1 31669795 31670021 -210994332 - L1ME3 LINE L1 -222 5940 5710 1969 142 30 3 chr1 31671029 31671366 -210992987 + MER41C LTR ERV1 1 346 -208 1326 156 0 9 chr1 31671402 31671626 -210992727 + MER41C LTR ERV1 333 554 0 2805 111 36 7 chr1 31671811 31672227 -210992126 + MSTA LTR MaLR 1 428 0 247 82 5 0 chr1 31672436 31672481 -210991872 - MIR SINE MIR -60 148 102 1243 289 131 34 chr1 31672488 31673539 -210990814 + L1MC4a LINE L1 3172 4324 -1822 235 301 110 15 chr1 31674145 31674281 -210990072 - L2 LINE L2 -213 3059 2911 2010 133 46 27 chr1 31674987 31675355 -210988998 - THE1C LTR MaLR 0 375 1 374 273 61 36 chr1 31675587 31675752 -210988601 + L1MC4a LINE L1 5612 5780 -2028 195 286 0 0 chr1 31675752 31675829 -210988524 + GA-rich Low_complexity Low_complexity 1 77 0 424 280 151 56 chr1 31676274 31676506 -210987847 + L1MC4a LINE L1 5702 5955 -1853 572 315 65 17 chr1 31676529 31676761 -210987592 + MIR SINE MIR 20 262 0 1621 157 70 94 chr1 31676862 31677245 -210987108 + MLT1A2 LTR MaLR 1 374 0 22 56 0 0 chr1 31677250 31677286 -210987067 + AT_rich Low_complexity Low_complexity 1 36 0 227 300 33 11 chr1 31677972 31678062 -210986291 - L2 LINE L2 -18 3254 3163 625 259 95 26 chr1 31678090 31678322 -210986031 - MIR SINE MIR -2 260 13 198 197 28 155 chr1 31678584 31678655 -210985698 + L2 LINE L2 3180 3241 -31 473 265 124 40 chr1 31678685 31678901 -210985452 + MIR SINE MIR 27 260 -2 183 253 24 84 chr1 31679011 31679094 -210985259 - L2 LINE L2 -82 3231 3154 2990 156 30 4 chr1 31679207 31679681 -210984672 + MER66B LTR ERV1 1 486 0 293 246 0 0 chr1 31679703 31679768 -210984585 + MER66B-int LTR ERV1 85 149 -6527 * 9166 245 68 67 chr1 31679766 31683584 -210980769 + MER66B-int LTR ERV1 53 3874 -2802 7981 17 0 0 chr1 31683584 31684579 -210979774 + L1PA3 LINE L1 5159 6153 -2 27 0 0 0 chr1 31684579 31684606 -210979747 + AT_rich Low_complexity Low_complexity 1 27 0 197 33 33 0 chr1 31684797 31684827 -210979526 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2700 132 20 52 chr1 31684828 31685368 -210978985 + MER66B-int LTR ERV1 3879 4401 -2275 259 209 0 45 chr1 31685368 31685435 -210978918 - MER4D LTR ERV1 -805 67 4 872 288 8 4 chr1 31685440 31685683 -210978670 - LOR1-int LTR ERV1 -1022 7098 6855 204 250 19 0 chr1 31685782 31685834 -210978519 + L2 LINE L2 3219 3271 -1 204 118 29 0 chr1 31688969 31689003 -210975350 + GA-rich Low_complexity Low_complexity 4 38 0 406 282 9 0 chr1 31689854 31689964 -210974389 + MIR3 SINE MIR 48 158 -50 495 263 103 0 chr1 31690457 31690613 -210973740 - MIR SINE MIR -10 252 81 1630 279 61 23 chr1 31690649 31691220 -210973133 + MLT1E LTR MaLR 1 593 0 381 43 0 0 chr1 31691531 31691578 -210972775 + (CA)n Simple_repeat Simple_repeat 1 47 0 252 265 17 51 chr1 31691785 31691902 -210972451 + MIR SINE MIR 19 131 -77 310 278 38 30 chr1 31692532 31692665 -210971688 - MIR SINE MIR -109 153 20 323 198 26 52 chr1 31693104 31693220 -210971133 - MIR SINE MIR -77 131 19 279 279 57 24 chr1 31693840 31694024 -210970329 - MIR SINE MIR -70 192 3 262 223 21 32 chr1 31694515 31694609 -210969744 + L2 LINE L2 2920 3012 -260 382 220 50 20 chr1 31694740 31694840 -210969513 - MIR SINE MIR -118 144 42 218 303 184 0 chr1 31695305 31695414 -210968939 + L3 LINE CR1 1332 1460 -117 221 254 32 0 chr1 31696858 31696921 -210967432 + L2 LINE L2 3185 3249 -64 296 174 0 14 chr1 31697014 31697083 -210967270 + (CA)n Simple_repeat Simple_repeat 1 68 0 403 287 151 23 chr1 31697575 31697840 -210966513 - L2 LINE L2 -5 3308 3010 262 179 39 51 chr1 31697867 31697945 -210966408 - MIR SINE MIR -68 140 64 208 331 155 11 chr1 31697993 31698174 -210966179 - MIR SINE MIR -46 216 10 267 167 0 37 chr1 31698907 31698961 -210965392 - L2 LINE L2 0 3272 3221 220 327 64 0 chr1 31699274 31699384 -210964969 - MER5A DNA MER1_type -26 163 47 201 277 67 8 chr1 31699683 31699802 -210964551 - MIR SINE MIR -109 153 28 422 297 45 45 chr1 31700073 31700339 -210964014 + LTR40b LTR ERVL 136 401 -61 270 227 12 31 chr1 31700807 31700905 -210963448 - MIR SINE MIR -7 201 106 209 317 219 0 chr1 31701087 31701210 -210963143 + MIR SINE MIR 107 256 -6 22 0 0 0 chr1 31701704 31701726 -210962627 + AT_rich Low_complexity Low_complexity 1 22 0 848 220 132 32 chr1 31702070 31702442 -210961911 - LTR16A1 LTR ERVL -5 452 44 291 237 113 21 chr1 31702647 31702744 -210961609 + MLT1K LTR MaLR 141 246 -342 408 276 38 62 chr1 31704039 31704249 -210960104 - MIR SINE MIR 0 262 58 652 222 76 0 chr1 31704267 31704438 -210959915 - MIR SINE MIR -1 261 78 188 343 0 20 chr1 31704664 31704766 -210959587 + MIR SINE MIR 29 128 -80 633 261 99 14 chr1 31704988 31705199 -210959154 - MIR SINE MIR -13 249 21 194 259 35 0 chr1 31705782 31705865 -210958488 + MIR SINE MIR 104 148 -60 475 246 78 39 chr1 31706350 31706577 -210957776 - MIR SINE MIR -19 243 3 306 332 169 18 chr1 31706664 31707119 -210957234 - L3 LINE CR1 -522 1055 532 202 281 0 55 chr1 31707127 31707255 -210957098 + (TCTCTG)n Simple_repeat Simple_repeat 3 123 0 * 286 306 0 20 chr1 31707177 31707275 -210957078 + CT-rich Low_complexity Low_complexity 1 96 0 347 305 119 11 chr1 31707496 31707673 -210956680 + MIR SINE MIR 32 227 -35 2229 135 0 0 chr1 31708020 31708323 -210956030 - AluSx SINE Alu -9 303 1 1093 280 86 44 chr1 31708342 31709046 -210955307 + L1ME LINE L1 5035 5768 -396 474 71 36 0 chr1 31709589 31709673 -210954680 + (CA)n Simple_repeat Simple_repeat 1 87 0 247 210 32 0 chr1 31710542 31710604 -210953749 + MIR SINE MIR 81 144 -64 352 268 54 9 chr1 31710761 31710873 -210953480 + MIR SINE MIR 20 136 -72 236 276 45 91 chr1 31711750 31711949 -210952404 + L3 LINE CR1 683 872 -705 204 261 0 0 chr1 31712108 31712154 -210952199 + (TAA)n Simple_repeat Simple_repeat 1 46 0 361 299 206 5 chr1 31712181 31712375 -210951978 - MIR SINE MIR -10 252 20 297 368 88 0 chr1 31712396 31712578 -210951775 + L3 LINE CR1 982 1179 -398 907 319 79 11 chr1 31712579 31712946 -210951407 - L2 LINE L2 0 3313 2922 1074 156 3 1 chr1 31712952 31713553 -210950800 + (ATG)n Simple_repeat Simple_repeat 1 782 0 596 293 86 32 chr1 31713569 31713917 -210950436 - L2 LINE L2 -400 2914 2548 489 306 189 30 chr1 31713880 31714181 -210950172 + L3 LINE CR1 1118 1466 -111 * 437 307 107 40 chr1 31714208 31714433 -210949920 + MIR SINE MIR 22 261 -1 447 163 0 0 chr1 31714434 31714514 -210949839 + (ATG)n Simple_repeat Simple_repeat 2 81 0 317 281 73 0 chr1 31714516 31714598 -210949755 - MER31A-int LTR ERV1 -4834 102 15 2517 135 74 15 chr1 31714647 31715105 -210949248 - MER31A LTR ERV1 0 485 1 574 273 119 65 chr1 31715544 31716021 -210948332 - MLT1J LTR MaLR 0 511 9 694 291 71 10 chr1 31716188 31716657 -210947696 - L1ME4a LINE L1 -23 6098 5567 1510 274 81 7 chr1 31717614 31718194 -210946159 - L1ME2 LINE L1 -78 6881 6259 1829 225 78 96 chr1 31718213 31718932 -210945421 - L1ME2 LINE L1 -743 6198 5503 2157 125 0 29 chr1 31718932 31719245 -210945108 - AluSq SINE Alu -9 304 1 1829 225 78 96 chr1 31719245 31719604 -210944749 - L1ME2 LINE L1 -1438 5503 5139 2293 101 0 10 chr1 31719604 31719902 -210944451 + AluSx SINE Alu 1 295 -17 1720 193 9 29 chr1 31719910 31720086 -210944267 - MER58B DNA MER1_type -2079 341 174 3068 128 30 0 chr1 31720086 31720578 -210943775 + MER84 LTR ERV1 1 507 0 1720 193 9 29 chr1 31720578 31720749 -210943604 - MER58B DNA MER1_type -2246 174 1 4576 69 6 71 chr1 31720777 31721427 -210942926 + SVA Other Other 779 1386 0 2355 257 67 36 chr1 31721505 31721955 -210942398 - L1ME2 LINE L1 -1868 5073 4639 6830 166 23 10 chr1 31721955 31724086 -210940267 - L1PA14 LINE L1 0 6161 4013 2355 257 67 36 chr1 31724086 31724557 -210939796 - L1ME2 LINE L1 -2302 4639 4123 1002 224 59 105 chr1 31724611 31725003 -210939350 - MLT1A2 LTR MaLR 0 374 1 1036 259 154 61 chr1 31725018 31726358 -210937995 - L1ME2 LINE L1 -3875 3247 1783 2820 172 23 14 chr1 31726376 31726947 -210937406 - L1MC3 LINE L1 -21 7764 7189 309 289 11 0 chr1 31726947 31727037 -210937316 - MLT1F1 LTR MaLR -442 125 35 821 128 22 22 chr1 31727037 31727216 -210937137 - L1MC3 LINE L1 -688 7097 6919 462 275 38 17 chr1 31727196 31727386 -210936967 - L1ME2 LINE L1 -4959 1464 1444 * 2339 107 0 3 chr1 31727386 31727686 -210936667 - AluSq SINE Alu -14 299 1 462 275 38 17 chr1 31727686 31727828 -210936525 - L1ME2 LINE L1 -4979 1444 1306 623 308 106 39 chr1 31727976 31728411 -210935942 - L1ME2 LINE L1 -5543 1388 925 927 188 80 148 chr1 31728455 31728780 -210935573 - AluJb SINE Alu -3 309 7 211 220 85 17 chr1 31729193 31729252 -210935101 + L2 LINE L2 3154 3216 -56 1120 285 63 28 chr1 31729286 31729714 -210934639 - L2 LINE L2 0 3313 2871 1332 246 139 19 chr1 31729757 31730121 -210934232 - L2 LINE L2 -1195 2119 1681 2238 126 3 0 chr1 31730121 31730423 -210933930 - AluSx SINE Alu -9 303 1 1332 246 139 19 chr1 31730423 31730541 -210933812 - L2 LINE L2 -1633 1681 1579 749 313 68 15 chr1 31730557 31730883 -210933470 + MLT1K LTR MaLR 47 389 -199 383 257 167 48 chr1 31730939 31731149 -210933204 + L2 LINE L2 3079 3313 0 485 259 184 13 chr1 31731818 31732057 -210932296 - L1ME4a LINE L1 -268 5853 5574 243 170 0 0 chr1 31732210 31732257 -210932096 + (TG)n Simple_repeat Simple_repeat 2 48 0 254 226 65 0 chr1 31732306 31732368 -210931985 - MIR SINE MIR -96 166 101 185 167 0 28 chr1 31732389 31732425 -210931928 + MIR SINE MIR 40 74 -188 238 346 23 23 chr1 31733664 31733794 -210930559 - MIR SINE MIR -16 246 117 361 271 52 0 chr1 31734287 31734383 -210929970 - MIR SINE MIR -62 146 46 315 258 68 76 chr1 31735202 31735334 -210929019 - MIR3 SINE MIR -52 156 26 195 276 186 30 chr1 31736540 31736804 -210927549 + L2 LINE L2 2564 2868 -446 711 246 41 27 chr1 31736915 31737135 -210927218 - MIR SINE MIR 0 262 40 227 321 73 0 chr1 31737268 31737377 -210926976 + L2 LINE L2 3150 3266 -6 255 362 52 0 chr1 31737665 31737781 -210926572 - L2 LINE L2 -34 3238 3117 485 278 99 0 chr1 31737840 31738002 -210926351 + MIR SINE MIR 75 252 -10 781 192 23 25 chr1 31738025 31738335 -210926018 - MLT1B LTR MaLR -17 373 2 786 254 42 65 chr1 31738335 31738815 -210925538 + L1ME3 LINE L1 5641 6109 -53 608 263 109 46 chr1 31739018 31739322 -210925031 - MLT1H LTR MaLR -226 323 1 2079 122 3 3 chr1 31739719 31740005 -210924348 + AluSc SINE Alu 1 286 -23 272 486 37 0 chr1 31740018 31740127 -210924226 + polypurine Low_complexity Low_complexity 2 114 0 858 211 66 18 chr1 31740322 31740550 -210923803 + MIR SINE MIR 24 262 0 233 92 92 0 chr1 31740774 31740839 -210923514 + A-rich Low_complexity Low_complexity 5 75 0 903 272 124 38 chr1 31741232 31741677 -210922676 - MLT1K LTR MaLR -12 576 94 193 279 0 0 chr1 31741782 31741825 -210922528 + L2 LINE L2 3005 3047 -266 676 242 137 48 chr1 31741877 31742104 -210922249 - MIR SINE MIR -4 258 12 189 211 0 0 chr1 31742145 31742197 -210922156 + (CA)n Simple_repeat Simple_repeat 1 52 0 246 335 11 28 chr1 31742223 31742399 -210921954 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 * 473 291 0 12 chr1 31742306 31742471 -210921882 + (CA)n Simple_repeat Simple_repeat 1 163 0 447 354 0 0 chr1 31742571 31742749 -210921604 + (CA)n Simple_repeat Simple_repeat 1 178 0 377 140 0 0 chr1 31742801 31742858 -210921495 + FRAM SINE Alu 61 117 -49 216 303 0 0 chr1 31742858 31742924 -210921429 + (CA)n Simple_repeat Simple_repeat 1 66 0 219 315 46 28 chr1 31742925 31743033 -210921320 + L2 LINE L2 3158 3267 -46 804 294 4 17 chr1 31743821 31744059 -210920294 - MIR SINE MIR 0 262 28 790 238 25 30 chr1 31744175 31744410 -210919943 - MIR SINE MIR -14 248 15 1483 186 147 55 chr1 31744446 31744503 -210919850 - MLT1D LTR MaLR -3 502 452 1621 173 7 14 chr1 31744503 31744798 -210919555 + AluJo SINE Alu 1 293 -19 1824 127 62 0 chr1 31744800 31745076 -210919277 + AluSx SINE Alu 1 293 -19 1483 186 147 55 chr1 31745076 31745472 -210918881 - MLT1D LTR MaLR -53 452 4 403 282 73 65 chr1 31745479 31745727 -210918626 - MIR SINE MIR -3 259 10 535 260 41 44 chr1 31746378 31746627 -210917726 - MIR3 SINE MIR -9 253 3 482 191 40 32 chr1 31747317 31747443 -210916910 + MIR SINE MIR 25 151 -57 358 266 44 18 chr1 31747842 31747955 -210916398 + MIR SINE MIR 60 175 -87 233 280 20 40 chr1 31747997 31748097 -210916256 - L2 LINE L2 -16 3256 3159 220 265 0 0 chr1 31748188 31748237 -210916116 - MIR SINE MIR -104 104 56 412 290 146 51 chr1 31750291 31750681 -210913672 + L2 LINE L2 2887 3313 0 202 256 144 22 chr1 31750989 31751079 -210913274 + MIR SINE MIR 47 147 -115 214 339 83 9 chr1 31751783 31751892 -210912461 + MIR SINE MIR 92 208 -54 184 365 16 0 chr1 31752029 31752092 -210912261 - L2 LINE L2 -7 3306 3243 200 258 30 15 chr1 31752530 31752596 -210911757 - MIR SINE MIR -115 147 81 655 271 29 0 chr1 31752662 31752832 -210911521 - MIR SINE MIR 0 262 88 284 352 15 51 chr1 31752850 31753046 -210911307 + L2 LINE L2 3112 3300 -13 271 268 79 10 chr1 31753419 31753571 -210910782 - MIR SINE MIR -36 226 61 1290 273 79 54 chr1 31753612 31754174 -210910179 - LTR41 LTR ERVL 0 795 215 367 324 25 26 chr1 31754193 31754428 -210909925 - LTR41 LTR ERVL -423 350 215 1175 209 70 20 chr1 31754446 31754747 -210909606 - LTR41 LTR ERVL -456 317 2 6361 281 60 33 chr1 31755112 31757333 -210907020 - ERVL LTR ERVL -394 5370 3090 574 314 21 0 chr1 31757336 31757524 -210906829 - ERVL LTR ERVL -2866 2898 2707 405 326 57 35 chr1 31757717 31758033 -210906320 - L2 LINE L2 0 3313 2991 243 292 14 0 chr1 31758053 31758125 -210906228 - MER94 DNA DNA -58 76 4 233 358 12 0 chr1 31758135 31758216 -210906137 + MIR SINE MIR 181 262 0 220 336 37 9 chr1 31758894 31759001 -210905352 - MIR SINE MIR -69 193 84 339 313 45 0 chr1 31759156 31759290 -210905063 + MER5A DNA MER1_type 50 189 0 481 252 98 0 chr1 31760040 31760183 -210904170 - MIR SINE MIR 0 262 106 488 268 11 55 chr1 31762227 31762410 -210901943 - MER117 DNA MER1_type -16 181 7 417 313 119 15 chr1 31762452 31762653 -210901700 + MIR SINE MIR 34 255 -7 204 294 29 0 chr1 31762738 31762806 -210901547 + MIR SINE MIR 49 118 -90 417 346 20 7 chr1 31763270 31763423 -210900930 + L3 LINE CR1 1281 1435 -142 202 275 29 14 chr1 31764178 31764247 -210900106 + L2 LINE L2 3193 3262 -10 757 316 8 23 chr1 31764592 31764848 -210899505 - MIR SINE MIR -8 254 3 4134 235 61 34 chr1 31765135 31768017 -210896336 + L1MDa LINE L1 1044 4002 -2538 2866 264 64 26 chr1 31767997 31769059 -210895294 + L1MDa LINE L1 4376 5485 -1055 * 2082 125 0 0 chr1 31769059 31769362 -210894991 - AluSx SINE Alu -9 303 1 2866 264 64 26 chr1 31769362 31769442 -210894911 + L1MDa LINE L1 5485 5561 -979 308 301 32 0 chr1 31769724 31769817 -210894536 - L2 LINE L2 0 3313 3218 359 279 18 14 chr1 31769851 31770004 -210894349 - MLT1J2 LTR MaLR -191 218 67 346 164 14 55 chr1 31770696 31770769 -210893584 + AluJ/FRAM SINE Alu 230 299 -3 494 246 22 22 chr1 31770782 31770920 -210893433 + L1M4 LINE L1 4643 4780 -1366 1776 202 63 14 chr1 31770925 31771351 -210893002 + MLT1C LTR MaLR 21 467 0 252 252 70 26 chr1 31771355 31771470 -210892883 - MIR SINE MIR -110 152 33 288 297 89 0 chr1 31771854 31771955 -210892398 - L2 LINE L2 -6 3266 3157 300 273 87 75 chr1 31772008 31772261 -210892092 - L2 LINE L2 -347 2967 2712 287 269 0 60 chr1 31772341 31772523 -210891830 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 283 288 76 83 chr1 31773290 31773554 -210890799 + L2 LINE L2 2995 3256 -16 619 294 60 9 chr1 31773659 31773877 -210890476 + MIR SINE MIR 22 250 -12 329 329 29 29 chr1 31773891 31774031 -210890322 + MLT1K LTR MaLR 38 177 -411 854 275 83 4 chr1 31774085 31774325 -210890028 + MLT1K LTR MaLR 330 588 0 200 292 14 14 chr1 31774357 31774429 -210889924 - MIR SINE MIR -157 105 34 198 284 59 49 chr1 31775098 31775200 -210889153 + L2 LINE L2 3209 3311 -2 180 341 57 0 chr1 31775359 31775447 -210888906 - MIR3 SINE MIR -107 101 9 2386 130 28 3 chr1 31775614 31775969 -210888384 - THE1B LTR MaLR 0 364 1 495 160 0 0 chr1 31775984 31776078 -210888275 + CT-rich Low_complexity Low_complexity 1 94 0 432 0 0 0 chr1 31776937 31776985 -210887368 + (TG)n Simple_repeat Simple_repeat 2 49 0 488 209 83 28 chr1 31777045 31777211 -210887142 - MIR SINE MIR -65 143 23 581 246 23 0 chr1 31777601 31777731 -210886622 - MER94 DNA DNA -1 133 1 248 299 65 0 chr1 31779936 31780013 -210884340 - MIR SINE MIR -70 192 111 251 154 19 0 chr1 31780023 31780075 -210884278 - MIR SINE MIR -130 132 80 199 175 88 18 chr1 31780305 31780362 -210883991 - MIR SINE MIR -147 115 55 342 0 0 0 chr1 31780861 31780899 -210883454 + (CA)n Simple_repeat Simple_repeat 2 39 0 508 276 56 61 chr1 31782573 31782610 -210881743 + MIR SINE MIR 64 100 -162 2514 50 0 0 chr1 31782610 31782907 -210881446 - AluY SINE Alu -14 297 1 508 276 56 61 chr1 31782907 31783065 -210881288 + MIR SINE MIR 100 258 -4 180 279 33 0 chr1 31784075 31784136 -210880217 - MIR SINE MIR -98 110 48 324 371 7 0 chr1 31784765 31784905 -210879448 + MIR SINE MIR 2 142 -120 1397 251 99 8 chr1 31785105 31785468 -210878885 - MSTD LTR MaLR 0 396 1 421 295 9 0 chr1 31786262 31786374 -210877979 + MER81 DNA DNA 1 113 -1 344 313 30 0 chr1 31787857 31787991 -210876362 - MIR3 SINE MIR -56 152 15 204 328 25 25 chr1 31788932 31789051 -210875302 - MIR3 SINE MIR -77 131 13 210 274 39 29 chr1 31789785 31789887 -210874466 + MIR SINE MIR 31 133 -129 286 333 59 0 chr1 31789908 31790043 -210874310 + MIR SINE MIR 87 229 -33 315 287 85 0 chr1 31790446 31790575 -210873778 + MIR3 SINE MIR 55 194 -14 604 260 68 11 chr1 31790645 31790852 -210873501 - MIR SINE MIR -11 251 35 520 250 64 0 chr1 31790979 31791119 -210873234 - MIR SINE MIR -78 184 36 678 224 87 40 chr1 31791499 31791821 -210872532 + L2 LINE L2 2622 2958 -356 329 241 62 62 chr1 31792627 31792739 -210871614 - L2 LINE L2 -1 3312 3201 291 283 10 10 chr1 31793350 31793449 -210870904 + MIR SINE MIR 29 127 -81 449 265 165 29 chr1 31794503 31794673 -210869680 - MIR SINE MIR -55 207 15 292 273 80 0 chr1 31795032 31795120 -210869233 + MIR SINE MIR 49 143 -119 274 300 64 36 chr1 31795553 31795693 -210868660 - MIR3 SINE MIR -23 185 42 294 308 43 8 chr1 31795741 31795858 -210868495 - MIR SINE MIR -1 261 141 377 285 60 26 chr1 31795974 31796125 -210868228 - MIR SINE MIR -33 229 74 800 267 32 16 chr1 31796127 31796374 -210867979 - MIR SINE MIR -4 258 8 314 209 30 15 chr1 31796383 31796450 -210867903 - MIR SINE MIR -174 88 21 389 264 19 88 chr1 31796676 31796735 -210867618 + MER5A DNA MER1_type 16 78 -111 2043 95 0 14 chr1 31796735 31797042 -210867311 + AluSg SINE Alu 1 303 0 389 264 19 88 chr1 31797042 31797140 -210867213 + MER5A DNA MER1_type 78 163 -26 1917 147 57 34 chr1 31797162 31797516 -210866837 + THE1B LTR MaLR 3 364 0 321 197 252 31 chr1 31797659 31797786 -210866567 - MIR SINE MIR -75 187 33 454 274 61 18 chr1 31798401 31798461 -210865892 + MIR SINE MIR 85 141 -121 2130 89 0 3 chr1 31798461 31798754 -210865599 + AluSg SINE Alu 1 292 -18 454 274 61 18 chr1 31798754 31798857 -210865496 + MIR SINE MIR 141 255 -7 186 222 0 0 chr1 31798966 31799020 -210865333 + (TG)n Simple_repeat Simple_repeat 1 54 0 2634 157 165 46 chr1 31799057 31799314 -210865039 - MER39 LTR ERV1 -47 660 435 1708 100 78 22 chr1 31799314 31799585 -210864768 + AluSx SINE Alu 1 286 -26 186 43 0 0 chr1 31799585 31799608 -210864745 + (GA)n Simple_repeat Simple_repeat 2 24 0 2634 157 165 46 chr1 31799608 31799936 -210864417 - MER39 LTR ERV1 -271 436 4 754 266 63 7 chr1 31800913 31801214 -210863139 + L1M4 LINE L1 3576 3884 -2262 * 15713 175 26 17 chr1 31801191 31807593 -210856760 + L1MA4 LINE L1 14 6475 -7 204 40 0 0 chr1 31807593 31807618 -210856735 + (TG)n Simple_repeat Simple_repeat 2 26 0 1353 159 54 14 chr1 31807618 31807894 -210856459 + L1MC3 LINE L1 7491 7777 -8 25 31 0 0 chr1 31807894 31807926 -210856427 + AT_rich Low_complexity Low_complexity 1 32 0 6608 186 26 6 chr1 31807947 31809736 -210854617 + L1M4 LINE L1 4022 5848 -518 405 0 0 0 chr1 31809905 31809950 -210854403 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr1 31810097 31810124 -210854229 + AT_rich Low_complexity Low_complexity 1 27 0 2651 102 3 0 chr1 31810260 31810614 -210853739 + THE1A LTR MaLR 1 355 0 11729 100 9 1 chr1 31810614 31812181 -210852172 + THE1A-int LTR MaLR 1 1580 0 1932 72 4 0 chr1 31812181 31812418 -210851935 + THE1A LTR MaLR 1 238 -117 1027 42 0 0 chr1 31812419 31812538 -210851815 + L1PA2 LINE L1 3 121 -6025 40287 30 22 1 chr1 31812538 31818208 -210846145 + L1PA2 LINE L1 399 6190 0 1078 75 0 0 chr1 31818210 31818343 -210846010 + THE1A LTR MaLR 223 355 0 2295 199 38 16 chr1 31818786 31819234 -210845119 - MER70A LTR ERVL -14 458 1 397 309 18 0 chr1 31819301 31819411 -210844942 - MIR SINE MIR -90 172 61 232 217 17 17 chr1 31819906 31819966 -210844387 - MIR SINE MIR -116 92 33 358 175 12 62 chr1 31820227 31820307 -210844046 + MIR SINE MIR 68 143 -65 208 344 74 8 chr1 31820969 31821091 -210843262 - L2 LINE L2 -6 3266 3137 529 260 44 31 chr1 31821177 31821404 -210842949 - LTR16C LTR ERVL 0 491 262 30 0 0 0 chr1 31821632 31821662 -210842691 + AT_rich Low_complexity Low_complexity 1 30 0 373 277 39 67 chr1 31822239 31822437 -210841916 + MIR3 SINE MIR 6 196 -66 222 164 109 0 chr1 31822514 31822569 -210841784 + MIR3 SINE MIR 105 165 -43 314 305 113 7 chr1 31823384 31823535 -210840818 + MIR SINE MIR 22 188 -74 318 311 86 7 chr1 31823725 31823876 -210840477 - MIR3 SINE MIR -19 189 27 314 222 0 16 chr1 31823902 31823965 -210840388 + MIR SINE MIR 14 75 -187 * 472 270 63 83 chr1 31823964 31824520 -210839833 - L2 LINE L2 -1 3271 2676 619 233 50 28 chr1 31824528 31824708 -210839645 + MIR SINE MIR 73 256 -6 522 356 26 17 chr1 31825366 31825596 -210838757 + MIR SINE MIR 8 239 -23 182 318 45 23 chr1 31825982 31826070 -210838283 - L2 LINE L2 -42 3271 3182 184 276 293 0 chr1 31826151 31826274 -210838079 + L2 LINE L2 1758 1916 -1398 1485 262 207 8 chr1 31826495 31827129 -210837224 + L2 LINE L2 1862 2621 -693 317 270 90 28 chr1 31827139 31827317 -210837036 - MLT1J LTR MaLR -322 189 1 338 296 67 41 chr1 31827355 31827627 -210836726 - L2 LINE L2 -284 3029 2741 42974 56 2 2 chr1 31827628 31833769 -210830584 - L1PA5 LINE L1 0 6154 10 192 288 179 22 chr1 31833814 31834043 -210830310 - L2 LINE L2 -656 2658 2394 1673 238 145 12 chr1 31834448 31834966 -210829387 + MLT1G1 LTR MaLR 1 587 -8 267 311 66 0 chr1 31835214 31835320 -210829033 + L2 LINE L2 3160 3272 0 302 270 34 109 chr1 31835727 31835994 -210828359 - L1M2a LINE L1 -6208 960 714 297 0 0 0 chr1 31835996 31836029 -210828324 + (TG)n Simple_repeat Simple_repeat 2 34 0 251 292 87 25 chr1 31836666 31836827 -210827526 + MIR SINE MIR 13 183 -79 382 319 15 15 chr1 31837753 31837888 -210826465 + MIR3 SINE MIR 20 154 -54 206 279 139 0 chr1 31838009 31838095 -210826258 + MIR SINE MIR 59 156 -106 315 104 0 0 chr1 31838177 31838225 -210826128 + (ATG)n Simple_repeat Simple_repeat 3 50 0 777 194 0 0 chr1 31838266 31838446 -210825907 + (ATG)n Simple_repeat Simple_repeat 1 180 0 667 182 6 17 chr1 31838456 31838637 -210825716 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 343 314 0 0 chr1 31838640 31838742 -210825611 + (ATG)n Simple_repeat Simple_repeat 1 102 0 2281 89 6 6 chr1 31838742 31839086 -210825267 + AluSp SINE Alu 1 402 0 372 103 0 0 chr1 31839086 31839144 -210825209 + (ATG)n Simple_repeat Simple_repeat 1 58 0 475 254 32 12 chr1 31839200 31839335 -210825018 - MIR3 SINE MIR -22 186 48 333 277 68 34 chr1 31839676 31839824 -210824529 - MIR3 SINE MIR -53 155 3 23 54 0 0 chr1 31839958 31839995 -210824358 + AT_rich Low_complexity Low_complexity 1 37 0 806 277 63 57 chr1 31840113 31840607 -210823746 + LTR33 LTR ERVL 24 520 -1 262 250 0 0 chr1 31840738 31840794 -210823559 + MIR SINE MIR 199 254 -8 471 272 55 41 chr1 31841068 31841250 -210823103 - MIR SINE MIR -61 147 3 2565 116 5 24 chr1 31841598 31841969 -210822384 + THE1B LTR MaLR 1 364 0 399 242 6 91 chr1 31842869 31843034 -210821319 + L2 LINE L2 3163 3313 0 196 29 0 57 chr1 31843495 31843530 -210820823 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 811 121 0 0 chr1 31843531 31843647 -210820706 - AluSq/x SINE Alu -197 116 1 336 177 2 0 chr1 31844019 31844089 -210820264 + MIR SINE MIR 74 145 -63 2369 77 0 3 chr1 31844824 31845135 -210819218 + AluY SINE Alu 1 310 -1 264 246 0 29 chr1 31845153 31845222 -210819131 - MLT1K LTR MaLR -111 477 411 314 275 42 49 chr1 31845390 31845532 -210818821 - MLT1K LTR MaLR -247 341 201 201 277 106 32 chr1 31845776 31845870 -210818483 - MIR SINE MIR -108 154 54 347 256 12 0 chr1 31846373 31846459 -210817894 - MIR SINE MIR -57 151 65 191 241 277 21 chr1 31846487 31846628 -210817725 - MIR SINE MIR -34 228 52 252 346 92 20 chr1 31847618 31847771 -210816582 + ERVL LTR ERVL 513 676 -5088 1686 331 64 74 chr1 31847828 31849439 -210814914 + ERVL LTR ERVL 2322 3916 -1738 432 258 115 33 chr1 31849621 31849803 -210814550 - MIR SINE MIR -56 206 10 220 256 154 0 chr1 31849989 31850067 -210814286 - MIR SINE MIR -112 150 61 272 316 156 9 chr1 31850294 31850506 -210813847 + L2 LINE L2 2947 3189 -124 500 298 84 1 chr1 31850509 31850795 -210813558 - LTR16C LTR ERVL -2 489 154 187 204 0 41 chr1 31851092 31851141 -210813212 + MIR3 SINE MIR 133 179 -29 850 157 0 16 chr1 31851414 31851657 -210812696 + (TG)n Simple_repeat Simple_repeat 1 239 0 283 288 76 83 chr1 31852785 31853049 -210811304 + L2 LINE L2 2995 3256 -16 609 295 60 9 chr1 31853155 31853372 -210810981 + MIR SINE MIR 23 250 -12 329 329 29 29 chr1 31853386 31853526 -210810827 + MLT1K LTR MaLR 38 177 -411 854 275 83 4 chr1 31853580 31853820 -210810533 + MLT1K LTR MaLR 330 588 0 200 292 14 14 chr1 31853852 31853924 -210810429 - MIR SINE MIR -157 105 34 198 284 59 49 chr1 31854593 31854695 -210809658 + L2 LINE L2 3209 3311 -2 180 341 57 0 chr1 31854854 31854942 -210809411 - MIR3 SINE MIR -107 101 9 2386 130 28 3 chr1 31855109 31855464 -210808889 - THE1B LTR MaLR 0 364 1 495 160 0 0 chr1 31855479 31855573 -210808780 + CT-rich Low_complexity Low_complexity 1 94 0 270 0 0 0 chr1 31856432 31856462 -210807891 + (TG)n Simple_repeat Simple_repeat 2 31 0 469 210 88 27 chr1 31856524 31856687 -210807666 - MIR SINE MIR -65 143 23 581 246 23 0 chr1 31857077 31857207 -210807146 - MER94 DNA DNA -1 133 1 267 298 24 0 chr1 31859225 31859309 -210805044 - MIR SINE MIR -67 141 56 2416 156 7 30 chr1 31859763 31860168 -210804185 + MSTD LTR MaLR 1 396 0 351 158 16 0 chr1 31860169 31860237 -210804116 - MIR SINE MIR -61 147 79 278 283 97 3 chr1 31860446 31860565 -210803788 + MIR SINE MIR 35 154 -56 352 267 56 0 chr1 31860971 31861061 -210803292 - MIR SINE MIR -70 192 98 245 116 0 0 chr1 31864564 31864607 -210799746 + L2 LINE L2 3271 3313 0 331 282 18 36 chr1 31864630 31864740 -210799613 - MIR SINE MIR -75 187 80 211 243 72 0 chr1 31864967 31865047 -210799306 - MIR SINE MIR -89 119 34 252 0 0 0 chr1 31865526 31865554 -210798799 + (CA)n Simple_repeat Simple_repeat 2 29 0 508 276 56 61 chr1 31867228 31867265 -210797088 + MIR SINE MIR 64 100 -162 2514 50 0 0 chr1 31867265 31867562 -210796791 - AluY SINE Alu -14 297 1 508 276 56 61 chr1 31867562 31867720 -210796633 + MIR SINE MIR 100 258 -4 180 279 33 0 chr1 31868730 31868791 -210795562 - MIR SINE MIR -98 110 48 324 371 7 0 chr1 31869420 31869560 -210794793 + MIR SINE MIR 2 142 -120 1397 251 99 8 chr1 31869760 31870123 -210794230 - MSTD LTR MaLR 0 396 1 423 295 9 0 chr1 31870917 31871029 -210793324 + MER81 DNA DNA 1 113 -1 344 313 30 0 chr1 31872512 31872646 -210791707 - MIR3 SINE MIR -56 152 15 366 156 0 0 chr1 31873383 31873447 -210790906 + GA-rich Low_complexity Low_complexity 4 67 0 693 230 0 0 chr1 31874008 31874186 -210790167 + GA-rich Low_complexity Low_complexity 3 180 0 282 195 219 0 chr1 31874290 31874372 -210789981 - MIR SINE MIR -77 131 32 369 203 236 123 chr1 31875370 31875582 -210788771 + MIR SINE MIR 8 243 -19 234 261 102 0 chr1 31875949 31876037 -210788316 - MIR SINE MIR -69 139 43 205 322 51 17 chr1 31876617 31876735 -210787618 - L2 LINE L2 -39 3233 3112 181 320 51 0 chr1 31876805 31876883 -210787470 - MIR SINE MIR -13 249 168 392 235 50 0 chr1 31876900 31876914 -210787439 - L1MA10 LINE L1 0 6334 6321 2948 221 64 31 chr1 31876914 31878325 -210786028 - L1ME1 LINE L1 -5 6161 4710 1750 177 0 22 chr1 31878325 31878641 -210785712 - AluJo SINE Alu 0 312 4 2948 221 64 31 chr1 31878641 31878743 -210785610 - L1ME1 LINE L1 -1456 4710 4613 266 104 91 0 chr1 31878745 31878822 -210785531 + (TA)n Simple_repeat Simple_repeat 1 84 0 367 303 16 25 chr1 31878825 31878947 -210785406 + L1MC4 LINE L1 6599 6719 -1323 304 255 51 31 chr1 31878885 31878973 -210785380 - L1MC4 LINE L1 -1333 6709 6617 * 1962 102 53 11 chr1 31878973 31879257 -210785096 + AluSx SINE Alu 6 301 -11 623 241 27 62 chr1 31879294 31879518 -210784835 + LTR52 LTR ERVL 4 219 -202 799 213 9 5 chr1 31879709 31879920 -210784433 - L1ME1 LINE L1 -1550 4596 4385 305 236 22 22 chr1 31879956 31880045 -210784308 + L1M4 LINE L1 4844 4932 -1214 3769 256 21 25 chr1 31880077 31881338 -210783015 - L1ME1 LINE L1 -1769 4377 3121 978 291 93 8 chr1 31881364 31881749 -210782604 + MLT1K LTR MaLR 8 425 -163 342 238 25 0 chr1 31881790 31881870 -210782483 + L2 LINE L2 3194 3275 -38 410 289 8 16 chr1 31881885 31882013 -210782340 + MLT1K LTR MaLR 454 580 -8 208 211 58 0 chr1 31882040 31882092 -210782261 + L2 LINE L2 3217 3271 -1 191 232 24 85 chr1 31882457 31882539 -210781814 + MIR SINE MIR 21 97 -165 212 202 239 37 chr1 31882543 31882652 -210781701 - MIR SINE MIR -62 146 16 379 269 37 15 chr1 31882928 31883062 -210781291 - MIR SINE MIR -64 144 8 570 313 77 38 chr1 31884138 31884660 -210779693 - L2 LINE L2 0 3272 2728 252 228 0 0 chr1 31885320 31885377 -210778976 - MIR SINE MIR -84 124 68 2927 131 14 0 chr1 31885647 31886075 -210778278 + MER57B LTR ERV1 1 434 0 1326 242 109 5 chr1 31886124 31886509 -210777844 - MLT1H LTR MaLR -124 425 1 372 231 0 0 chr1 31886533 31886611 -210777742 - MIR SINE MIR -138 124 47 321 330 27 9 chr1 31886708 31886820 -210777533 - L2 LINE L2 -32 3240 3127 205 189 0 0 chr1 31886875 31886912 -210777441 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 346 193 42 0 chr1 31887850 31887930 -210776423 + MER5A DNA MER1_type 16 109 -80 202 264 132 0 chr1 31888065 31888171 -210776182 + MIR SINE MIR 10 129 -133 * 312 312 53 49 chr1 31888152 31888399 -210775954 + L2 LINE L2 2877 3124 -148 192 298 35 0 chr1 31888420 31888477 -210775876 + L2 LINE L2 3235 3293 -20 404 242 102 8 chr1 31889221 31889349 -210775004 + MER115 DNA AcHobo 114 253 -440 231 214 0 0 chr1 31889714 31889784 -210774569 + (TGG)n Simple_repeat Simple_repeat 3 72 0 303 267 133 9 chr1 31890306 31890411 -210773942 + MIR SINE MIR 84 201 -61 2316 111 51 20 chr1 31890488 31890841 -210773512 - THE1B LTR MaLR 0 364 1 662 247 12 12 chr1 31891431 31891601 -210772752 - MIR SINE MIR -2 260 91 587 297 118 9 chr1 31891661 31891890 -210772463 + MER115 DNA AcHobo 2 255 -438 281 250 66 0 chr1 31891944 31892020 -210772333 - MIR SINE MIR -177 85 5 273 242 0 0 chr1 31892078 31892140 -210772213 - MLT1H LTR MaLR 0 549 488 713 266 0 1 chr1 31892141 31892301 -210772052 + ERVL LTR ERVL 4105 4300 -1223 1726 320 23 18 chr1 31892301 31892955 -210771398 + ERVL LTR ERVL 4778 5434 -330 557 218 12 67 chr1 31893256 31893421 -210770932 + LTR41 LTR ERVL 6 161 -612 526 237 100 60 chr1 31893648 31893897 -210770456 + LTR41 LTR ERVL 506 764 -9 217 170 64 0 chr1 31894060 31894107 -210770246 + T-rich Low_complexity Low_complexity 2 51 0 2083 148 39 74 chr1 31894336 31894744 -210769609 - MER65A LTR ERV1 0 445 53 201 39 0 0 chr1 31894744 31894770 -210769583 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2083 148 39 74 chr1 31894770 31894822 -210769531 - MER65A LTR ERV1 -392 53 1 188 308 39 0 chr1 31895268 31895346 -210769007 - MIR SINE MIR -67 141 61 509 310 5 25 chr1 31895883 31896080 -210768273 + L1MEc LINE L1 1667 1859 -4537 2586 98 13 3 chr1 31896083 31896462 -210767891 + L1PA10 LINE L1 5685 6067 -101 429 110 0 0 chr1 31896562 31896635 -210767718 + (TG)n Simple_repeat Simple_repeat 2 74 0 411 273 19 32 chr1 31897486 31897640 -210766713 + MIR3 SINE MIR 29 180 -28 605 173 0 0 chr1 31897683 31897787 -210766566 + MIR SINE MIR 72 175 -87 289 203 0 78 chr1 31898444 31898572 -210765781 + (CACCC)n Simple_repeat Simple_repeat 3 120 0 329 244 71 6 chr1 31900143 31900302 -210764051 + MIR SINE MIR 17 183 -53 426 108 0 0 chr1 31900388 31900453 -210763900 + (ATG)n Simple_repeat Simple_repeat 1 65 0 1594 178 89 56 chr1 31900458 31900496 -210763857 - MLT2D LTR ERVL -7 407 372 393 58 0 0 chr1 31900496 31900548 -210763805 + (TG)n Simple_repeat Simple_repeat 1 52 0 1594 178 89 56 chr1 31900548 31900903 -210763450 - MLT2D LTR ERVL -42 372 1 3921 102 3 50 chr1 31901050 31901686 -210762667 + LTR14B LTR ERVK 3 608 0 272 305 0 61 chr1 31901720 31901801 -210762552 + L2 LINE L2 3144 3216 -56 2367 178 63 0 chr1 31901801 31902244 -210762109 + MER70A LTR ERVL 2 472 0 272 305 0 61 chr1 31902244 31902293 -210762060 + L2 LINE L2 3216 3266 -6 427 277 0 0 chr1 31903230 31903331 -210761022 - MIR SINE MIR -63 145 45 306 274 126 11 chr1 31903438 31903533 -210760820 + L2 LINE L2 3196 3301 -12 261 274 14 0 chr1 31904144 31904217 -210760136 - L2 LINE L2 0 3313 3240 380 323 0 8 chr1 31904743 31904867 -210759486 + MIR SINE MIR 61 183 -79 284 252 56 47 chr1 31905362 31905469 -210758884 + MIR SINE MIR 42 149 -113 185 331 25 50 chr1 31905537 31905658 -210758695 - L2 LINE L2 -1076 2238 2121 188 367 22 0 chr1 31905677 31905767 -210758586 + L3b LINE CR1 1304 1395 -188 739 219 104 0 chr1 31905799 31905982 -210758371 + MIR SINE MIR 56 257 -5 336 248 0 0 chr1 31905990 31906107 -210758246 + (ATG)n Simple_repeat Simple_repeat 2 118 0 1751 158 43 51 chr1 31906108 31906272 -210758081 + MLT1B LTR MaLR 2 166 -224 2293 108 7 0 chr1 31906272 31906568 -210757785 + AluSx SINE Alu 1 298 -14 1751 158 43 51 chr1 31906568 31906795 -210757558 + MLT1B LTR MaLR 166 390 0 1893 165 19 21 chr1 31907348 31907724 -210756629 - THE1C LTR MaLR 0 375 1 576 251 10 8 chr1 31907810 31908204 -210756149 + (ATGGTG)n Simple_repeat Simple_repeat 1 395 0 679 208 0 16 chr1 31908206 31908389 -210755964 + (ATG)n Simple_repeat Simple_repeat 1 180 0 422 257 0 6 chr1 31908419 31908590 -210755763 + (ATG)n Simple_repeat Simple_repeat 1 170 0 793 188 0 15 chr1 31908610 31908879 -210755474 + (ATGGTG)n Simple_repeat Simple_repeat 1 265 0 497 313 142 25 chr1 31909581 31910124 -210754229 - L2 LINE L2 -1 3312 2709 252 321 9 9 chr1 31910617 31910723 -210753630 + MIR SINE MIR 38 143 -119 243 0 0 0 chr1 31910762 31910789 -210753564 + (CA)n Simple_repeat Simple_repeat 2 28 0 3180 118 24 66 chr1 31910838 31911382 -210752971 - MER1A DNA MER1_type -8 521 1 338 61 20 0 chr1 31911864 31911913 -210752440 + (GA)n Simple_repeat Simple_repeat 2 51 0 184 242 0 0 chr1 31911960 31911993 -210752360 + L2 LINE L2 3225 3257 -15 183 246 58 0 chr1 31912167 31912236 -210752117 + MER5B DNA MER1_type 15 87 -91 2604 143 48 2 chr1 31912641 31913102 -210751251 - Tigger3b DNA MER2_type 0 1231 750 42519 42 1 3 chr1 31913105 31919272 -210745081 + L1PA4 LINE L1 1 6152 -3 4162 127 41 35 chr1 31919597 31919996 -210744357 - Tigger3b DNA MER2_type -2270 758 350 2314 113 0 10 chr1 31919996 31920307 -210744046 - AluSc SINE Alu -1 308 1 4162 127 41 35 chr1 31920307 31920657 -210743696 - Tigger3b DNA MER2_type -2678 350 4 602 235 54 34 chr1 31920661 31920791 -210743562 - L1MEc LINE L1 -4641 1755 1618 2148 131 129 5 chr1 31920791 31921172 -210743181 + MSTA LTR MaLR 1 428 0 602 235 54 34 chr1 31921172 31921245 -210743108 - L1MEc LINE L1 -4778 1618 1548 * 1072 241 98 25 chr1 31921238 31921637 -210742716 - L1MEc LINE L1 -5306 1090 663 1880 177 85 34 chr1 31921641 31921806 -210742547 + MLT1C LTR MaLR 6 161 -306 1762 164 11 0 chr1 31921806 31922069 -210742284 + AluJb SINE Alu 1 266 -46 1880 177 85 34 chr1 31922069 31922339 -210742014 + MLT1C LTR MaLR 161 463 -4 1655 288 26 17 chr1 31922352 31922880 -210741473 - L1MEc LINE L1 -5753 643 111 458 131 24 0 chr1 31922880 31922964 -210741389 + CT-rich Low_complexity Low_complexity 1 86 0 377 299 37 15 chr1 31923168 31923302 -210741051 - MIR SINE MIR -8 254 118 1080 187 72 96 chr1 31923314 31923688 -210740665 + MLT1A1 LTR MaLR 1 365 0 2836 221 89 76 chr1 31923692 31924709 -210739644 + MLT1A1-int LTR MaLR 5 1427 -308 2127 112 4 0 chr1 31924709 31924987 -210739366 - AluSg SINE Alu -12 298 20 2836 221 89 76 chr1 31924987 31925301 -210739052 + MLT1A1-int LTR MaLR 1427 1735 0 832 229 207 10 chr1 31925302 31925607 -210738746 + MLT1A1 LTR MaLR 1 365 0 268 216 18 81 chr1 31925687 31925798 -210738555 - L3 LINE CR1 -77 1500 1397 354 260 94 0 chr1 31926557 31926684 -210737669 - MIR SINE MIR -78 184 46 293 306 61 10 chr1 31926811 31926909 -210737444 + MER5B DNA MER1_type 1 103 -75 339 25 0 0 chr1 31927411 31927451 -210736902 + (CA)n Simple_repeat Simple_repeat 1 40 0 682 288 44 18 chr1 31928805 31929034 -210735319 - MIR SINE MIR -14 248 14 307 214 0 0 chr1 31929177 31929233 -210735120 - L2 LINE L2 -9 3304 3249 733 315 60 20 chr1 31929550 31929958 -210734395 + L1ME4a LINE L1 5475 5904 -217 1452 160 115 42 chr1 31929958 31930246 -210734107 + AluJb SINE Alu 1 309 -3 733 315 60 20 chr1 31930246 31930288 -210734065 + L1ME4a LINE L1 5904 5943 -178 1105 203 37 12 chr1 31930333 31930579 -210733774 - MIR SINE MIR 0 262 11 2355 144 59 0 chr1 31930715 31931119 -210733234 + MSTA LTR MaLR 1 428 0 525 275 79 61 chr1 31931214 31931556 -210732797 + L2 LINE L2 2839 3186 -86 540 351 43 0 chr1 31931592 31931823 -210732530 + MIR SINE MIR 21 261 -1 482 242 224 21 chr1 31931957 31932292 -210732061 + LTR33 LTR ERVL 7 409 -112 419 281 8 16 chr1 31932578 31932699 -210731654 + MIR SINE MIR 23 142 -66 304 298 74 0 chr1 31932827 31932948 -210731405 + L2 LINE L2 3167 3296 -17 257 253 0 80 chr1 31932990 31933065 -210731288 - L2 LINE L2 -44 3269 3201 400 314 31 16 chr1 31933417 31933608 -210730745 + LTR16C LTR ERVL 298 491 0 296 353 71 0 chr1 31934300 31934470 -210729883 - MIR SINE MIR -18 244 63 185 279 114 14 chr1 31934766 31934906 -210729447 - L3 LINE CR1 -352 1225 1072 186 162 0 27 chr1 31934912 31934949 -210729404 - L2 LINE L2 -20 3293 3258 568 257 40 7 chr1 31935042 31935194 -210729159 + L2 LINE L2 2890 3046 -267 210 300 38 0 chr1 31935211 31935291 -210729062 - L2 LINE L2 -201 3071 2989 184 369 25 8 chr1 31935258 31935380 -210728973 + L3 LINE CR1 1451 1574 -3 * 270 280 76 21 chr1 31936094 31936202 -210728151 + MIR SINE MIR 28 132 -76 615 291 66 22 chr1 31936312 31936477 -210727876 - MIR SINE MIR -23 239 60 1660 218 3 0 chr1 31936477 31936770 -210727583 + AluJo SINE Alu 1 294 -18 615 291 66 22 chr1 31936770 31936831 -210727522 - MIR SINE MIR -202 60 3 352 300 0 23 chr1 31936960 31937090 -210727263 + L2 LINE L2 2919 3045 -227 287 292 194 7 chr1 31938645 31938789 -210725564 + MIR3 SINE MIR 35 205 -3 606 220 2 0 chr1 31938851 31939288 -210725065 + (ATG)n Simple_repeat Simple_repeat 1 438 0 534 202 0 0 chr1 31939350 31939528 -210724825 + (ATG)n Simple_repeat Simple_repeat 1 178 0 241 312 43 0 chr1 31939636 31939729 -210724624 - MIR SINE MIR -83 179 83 584 139 7 0 chr1 31940468 31940581 -210723772 - L1MA8 LINE L1 -177 6114 5997 1716 176 4 0 chr1 31940590 31940857 -210723496 - AluSx SINE Alu -18 294 27 424 309 142 50 chr1 31940931 31941514 -210722839 + L2 LINE L2 2258 2894 -420 806 274 32 78 chr1 31941604 31942129 -210722224 + LTR33 LTR ERVL 21 521 0 192 210 16 97 chr1 31942199 31942261 -210722092 + L2 LINE L2 3165 3221 -92 375 322 16 8 chr1 31942688 31942809 -210721544 + MIR3 SINE MIR 11 132 -76 293 306 48 20 chr1 31943327 31943474 -210720879 - MIR SINE MIR -43 219 69 1938 115 7 4 chr1 31943988 31944258 -210720095 + AluSx SINE Alu 3 273 -39 234 0 0 0 chr1 31944258 31944284 -210720069 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 213 149 45 15 chr1 31944427 31944494 -210719859 + (TTAA)n Simple_repeat Simple_repeat 3 71 0 22 35 0 0 chr1 31944503 31944532 -210719821 + AT_rich Low_complexity Low_complexity 1 29 0 308 213 25 38 chr1 31944535 31944695 -210719658 + (TTAA)n Simple_repeat Simple_repeat 2 159 0 236 256 22 56 chr1 31944852 31944942 -210719411 + MIR3 SINE MIR 91 177 -31 832 252 68 0 chr1 31945443 31945677 -210718676 - MIR SINE MIR 0 262 13 3809 82 2 22 chr1 31945776 31946310 -210718043 - L1PA14 LINE L1 0 6161 5639 251 239 0 0 chr1 31946315 31946361 -210717992 + MER52C LTR ERV1 8 53 -1225 7596 175 79 37 chr1 31946655 31948194 -210716159 + MER52A LTR ERV1 55 1755 0 2725 133 150 7 chr1 31948194 31948797 -210715556 - L1P4 LINE L1 -527 5641 4877 1984 145 129 21 chr1 31948797 31949183 -210715170 + MSTA LTR MaLR 1 428 0 2725 133 150 7 chr1 31949183 31949339 -210715014 - L1P4 LINE L1 -1291 4877 4745 443 297 55 47 chr1 31949343 31949707 -210714646 + L2 LINE L2 2943 3309 -4 266 243 27 40 chr1 31949729 31949803 -210714550 + L2 LINE L2 3200 3272 0 246 320 13 59 chr1 31949983 31950092 -210714261 - MIR3 SINE MIR -27 181 79 2313 137 121 0 chr1 31950092 31950471 -210713882 - MSTC LTR MaLR -3 425 1 246 320 13 59 chr1 31950471 31950514 -210713839 - MIR3 SINE MIR -129 79 36 689 245 0 0 chr1 31950668 31950819 -210713534 - MIR SINE MIR -74 188 38 460 331 45 6 chr1 31952381 31952559 -210711794 - MIR SINE MIR -58 204 20 3958 250 98 54 chr1 31952559 31952931 -210711422 + L1MEc LINE L1 36 390 -5825 1942 97 78 0 chr1 31952931 31953200 -210711153 + AluSg SINE Alu 1 290 -20 3958 250 98 54 chr1 31953200 31953699 -210710654 + L1MEc LINE L1 390 865 -5350 2255 125 0 0 chr1 31953699 31954010 -210710343 + AluSq SINE Alu 1 311 -2 3958 250 98 54 chr1 31954010 31954283 -210710070 + L1MEc LINE L1 865 1124 -5091 2228 133 0 0 chr1 31954283 31954591 -210709762 + AluSx SINE Alu 3 310 -2 3958 250 98 54 chr1 31954591 31955343 -210709010 + L1MEc LINE L1 1124 1841 -4374 3192 165 30 7 chr1 31955343 31955881 -210708472 - MER44D DNA MER2_type 0 605 1 3958 250 98 54 chr1 31955881 31957013 -210707340 + L1MEc LINE L1 1841 3156 -3059 2335 168 20 9 chr1 31957084 31957524 -210706829 + MER65A LTR ERV1 1 445 0 732 249 52 81 chr1 31957524 31957893 -210706460 + MER65A-int LTR ERV1 5 362 -4509 2895 214 50 30 chr1 31957981 31958676 -210705677 + MER65A-int LTR ERV1 523 1231 -3640 225 222 97 56 chr1 31958840 31958912 -210705441 + MER51C LTR ERV1 341 415 -225 935 158 0 121 chr1 31958986 31959201 -210705152 + MER51C LTR ERV1 452 640 0 4354 172 105 53 chr1 31959201 31959691 -210704662 + MER65A-int LTR ERV1 1238 1701 -3170 237 65 0 0 chr1 31959691 31959722 -210704631 + (TG)n Simple_repeat Simple_repeat 2 32 0 4354 172 105 53 chr1 31959722 31960061 -210704292 + MER65A-int LTR ERV1 1701 2021 -2850 381 58 0 0 chr1 31960061 31960113 -210704240 + (TG)n Simple_repeat Simple_repeat 1 52 0 769 143 0 0 chr1 31960122 31960234 -210704119 - FLAM_C SINE Alu -17 116 5 4354 172 105 53 chr1 31960234 31960588 -210703765 + MER65A-int LTR ERV1 2028 2494 -2377 846 173 68 32 chr1 31960662 31960882 -210703471 + MER65A-int LTR ERV1 1516 1743 -6377 * 1309 177 88 101 chr1 31960863 31961468 -210702885 + MER65A-int LTR ERV1 1989 3493 -3105 725 158 84 58 chr1 31961735 31961925 -210702428 + MER65A-int LTR ERV1 3536 3730 -2868 2542 205 66 65 chr1 31962005 31963444 -210700909 + MER65A-int LTR ERV1 2469 3799 -1137 295 205 219 36 chr1 31963445 31963603 -210700750 + MER65A-int LTR ERV1 5216 5696 -728 650 226 60 74 chr1 31963615 31963857 -210700496 + MER65A-int LTR ERV1 3605 4530 -406 7372 6 1 0 chr1 31963867 31964730 -210699623 + L1HS LINE L1 5203 6066 -89 2655 223 30 13 chr1 31964837 31965461 -210698892 + MER65A-int LTR ERV1 4237 4871 0 1445 172 8 12 chr1 31965461 31965717 -210698636 + MER65A LTR ERV1 1 255 -190 217 179 0 0 chr1 31967385 31967424 -210696929 + MER5A DNA MER1_type 36 74 -115 237 224 17 17 chr1 31967513 31967571 -210696782 + CT-rich Low_complexity Low_complexity 1 58 0 246 200 89 67 chr1 31967827 31967917 -210696436 + MIR SINE MIR 37 128 -80 795 255 87 33 chr1 31968051 31968384 -210695969 + MLT1I LTR MaLR 3 353 -56 296 256 89 0 chr1 31968543 31968633 -210695720 - L2 LINE L2 -28 3244 3147 792 267 46 4 chr1 31968720 31968960 -210695393 + MIR SINE MIR 3 252 -10 306 281 35 0 chr1 31969009 31969123 -210695230 + MIR SINE MIR 46 163 -99 195 221 147 0 chr1 31969528 31969596 -210694757 - MIR SINE MIR -127 135 58 415 306 72 10 chr1 31969778 31969987 -210694366 + MIR SINE MIR 31 252 -10 514 298 48 0 chr1 31970144 31970332 -210694021 - MIR SINE MIR -20 242 46 2796 91 6 0 chr1 31970728 31971089 -210693264 + THE1B LTR MaLR 2 364 0 1540 194 39 0 chr1 31971334 31971613 -210692740 + AluJo SINE Alu 1 290 -22 189 0 0 0 chr1 31971614 31971635 -210692718 + (CA)n Simple_repeat Simple_repeat 2 22 0 4792 20 0 0 chr1 31972843 31973388 -210690965 - L1P LINE L1 -1650 4496 3952 1824 60 0 8 chr1 31973387 31973621 -210690732 + L1P LINE L1 4519 4750 -1396 * 7972 20 0 0 chr1 31973721 31975312 -210689041 + L1PA3 LINE L1 4563 6155 0 1894 147 3 32 chr1 31976496 31976809 -210687544 - AluJo SINE Alu -7 305 2 2170 118 0 3 chr1 31976815 31977111 -210687242 - AluSg SINE Alu -15 295 1 25456 74 11 1 chr1 31977128 31981279 -210683074 - L1PA6 LINE L1 -2 6467 2278 1896 162 0 7 chr1 31981278 31981586 -210682767 - L1PA6 LINE L1 -6152 309 4 * 230 331 57 46 chr1 31981816 31981991 -210682362 + LTR67 LTR ERVL 3 179 -378 1016 194 28 14 chr1 31982265 31982481 -210681872 + MIR SINE MIR 7 225 -37 320 275 17 42 chr1 31983134 31983254 -210681099 + L2 LINE L2 3155 3271 -1 344 301 145 0 chr1 31983266 31983459 -210680894 - MIR SINE MIR -14 248 28 323 317 46 100 chr1 31983476 31983936 -210680417 + L2 LINE L2 2825 3259 -13 514 291 75 0 chr1 31983950 31984149 -210680204 - MIR SINE MIR 0 262 49 219 69 0 0 chr1 31985339 31985368 -210678985 + MIR SINE MIR 115 143 -119 476 333 39 12 chr1 31986056 31986314 -210678039 - L2 LINE L2 -177 3095 2831 384 313 0 0 chr1 31986474 31986573 -210677780 + MIR SINE MIR 48 146 -62 198 0 0 0 chr1 31986597 31986619 -210677734 + (A)n Simple_repeat Simple_repeat 1 22 0 409 314 142 32 chr1 31986639 31987040 -210677313 - L2 LINE L2 0 3313 2869 12003 204 33 17 chr1 31987042 31990048 -210674305 + L1MB3 LINE L1 2468 5524 -743 791 147 0 28 chr1 31990048 31990225 -210674128 + (GGAA)n Simple_repeat Simple_repeat 1 172 0 3527 172 33 12 chr1 31990249 31990918 -210673435 + L1MB3 LINE L1 5498 6180 -3 835 221 47 17 chr1 31990935 31991170 -210673183 + L1M4 LINE L1 3844 4085 -2061 207 0 0 0 chr1 31991555 31991578 -210672775 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 213 227 45 0 chr1 31992117 31992183 -210672170 + (TA)n Simple_repeat Simple_repeat 2 70 0 369 292 159 0 chr1 31993025 31993220 -210671133 - L2 LINE L2 -1491 1823 1598 361 257 243 7 chr1 31993437 31993573 -210670780 - MIR3 SINE MIR -24 184 17 760 192 87 12 chr1 31994248 31994420 -210669933 + MIR SINE MIR 56 240 -22 313 192 68 0 chr1 31994613 31994686 -210669667 - LTR16C LTR ERVL -9 482 405 310 308 29 0 chr1 31994838 31994942 -210669411 - MIR SINE MIR -80 182 76 233 343 36 29 chr1 31995696 31995836 -210668517 + MIR3 SINE MIR 1 141 -67 255 284 159 0 chr1 31996068 31996156 -210668197 + L2 LINE L2 3168 3269 -3 325 245 20 20 chr1 31996180 31996282 -210668071 + MER5A DNA MER1_type 4 105 -84 205 259 87 32 chr1 31996432 31996617 -210667736 + L2 LINE L2 2701 2895 -419 3079 181 40 32 chr1 31996790 31997421 -210666932 + LTR27 LTR ERV1 1 636 0 191 187 55 143 chr1 31997948 31998039 -210666314 - MIR SINE MIR -81 181 99 312 269 56 9 chr1 31998245 31998353 -210666000 + MLT1K LTR MaLR 84 196 -392 515 225 289 8 chr1 31998355 31998462 -210665891 - L2 LINE L2 -105 3208 3132 1784 153 20 103 chr1 31998462 31998545 -210665808 + MLT1A1 LTR MaLR 1 89 -276 1569 111 43 0 chr1 31998545 31998752 -210665601 + AluSg/x SINE Alu 84 299 -13 1784 153 20 103 chr1 31998752 31998852 -210665501 + MLT1A1 LTR MaLR 89 196 -169 1719 171 0 11 chr1 31998852 31999139 -210665214 + AluJo SINE Alu 10 293 -19 1784 153 20 103 chr1 31999139 31999352 -210665001 + MLT1A1 LTR MaLR 196 365 0 515 225 289 8 chr1 31999352 31999633 -210664720 - L2 LINE L2 -181 3132 2706 733 221 49 66 chr1 31999645 31999809 -210664544 - MIR SINE MIR 0 262 102 4652 87 16 25 chr1 31999809 32000479 -210663874 + MER4A LTR ERV1 1 664 0 733 221 49 66 chr1 32000479 32000558 -210663795 - MIR SINE MIR -160 102 23 391 202 221 10 chr1 32000590 32000694 -210663659 - MIR SINE MIR -115 147 22 546 254 87 16 chr1 32003259 32003444 -210660909 - MIR SINE MIR -54 208 11 464 270 0 4 chr1 32003463 32003603 -210660750 - L3 LINE CR1 -115 1462 1263 2147 147 23 35 chr1 32003604 32004000 -210660353 + LTR45B LTR ERV1 3 393 -96 1428 222 118 26 chr1 32004345 32004835 -210659518 + MLT1H LTR MaLR 15 549 0 290 154 0 39 chr1 32005048 32005100 -210659253 - L2 LINE L2 0 3272 3223 298 147 191 15 chr1 32006613 32006681 -210657672 + L2 LINE L2 3233 3312 -1 252 289 56 67 chr1 32007098 32007278 -210657075 + MIR SINE MIR 14 191 -71 263 289 74 67 chr1 32008032 32008181 -210656172 - MIR3 SINE MIR -14 194 45 257 163 0 0 chr1 32008187 32008230 -210656123 + MIR SINE MIR 81 123 -85 353 254 103 113 chr1 32008518 32008703 -210655650 - MIR3 SINE MIR -10 198 16 310 325 141 25 chr1 32008840 32009003 -210655350 - MIR SINE MIR -77 185 4 457 264 9 0 chr1 32009061 32009167 -210655186 - MER81 DNA DNA -7 107 1 371 267 183 69 chr1 32009748 32009950 -210654403 + MIR SINE MIR 19 243 -19 1536 144 35 92 chr1 32009983 32010386 -210653967 - L1MA7 LINE L1 -5 6286 5907 2579 95 31 17 chr1 32010386 32010744 -210653609 + THE1B LTR MaLR 1 363 -1 230 307 100 7 chr1 32011046 32011186 -210653167 + MIR3 SINE MIR 55 207 -1 280 356 9 17 chr1 32011394 32011509 -210652844 + MIR SINE MIR 30 143 -65 263 280 93 17 chr1 32011977 32012095 -210652258 + L2 LINE L2 3012 3138 -175 1719 158 17 20 chr1 32012100 32012397 -210651956 - AluJb SINE Alu -14 298 3 1134 277 97 28 chr1 32012458 32013169 -210651184 - L2 LINE L2 0 3313 2546 414 0 0 0 chr1 32013786 32013832 -210650521 + (TG)n Simple_repeat Simple_repeat 2 47 0 324 290 57 16 chr1 32014036 32014160 -210650193 + MIR3 SINE MIR 66 194 -14 343 303 63 42 chr1 32014332 32014522 -210649831 - MIR SINE MIR -55 207 13 294 304 112 28 chr1 32015327 32015541 -210648812 + L2 LINE L2 2233 2464 -850 425 284 21 0 chr1 32015687 32015828 -210648525 + (TGAA)n Simple_repeat Simple_repeat 4 147 0 1848 165 0 3 chr1 32015961 32016246 -210648107 - AluJb SINE Alu -24 288 5 230 81 27 0 chr1 32016298 32016335 -210648018 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 284 276 98 41 chr1 32016884 32017007 -210647346 + MIR SINE MIR 22 151 -57 255 247 26 52 chr1 32017106 32017183 -210647170 + L2 LINE L2 3198 3272 0 440 92 0 0 chr1 32017424 32017489 -210646864 + Alu SINE Alu 241 305 -7 352 77 64 0 chr1 32017518 32017596 -210646757 + (TG)n Simple_repeat Simple_repeat 1 83 0 388 278 116 24 chr1 32018131 32018349 -210646004 + MIR3 SINE MIR 15 250 -12 294 228 90 78 chr1 32018679 32018842 -210645511 - MIR SINE MIR -58 150 5 434 282 25 35 chr1 32019301 32019529 -210644824 - L1MEd LINE L1 -861 1629 1219 1318 228 100 26 chr1 32019542 32020036 -210644317 - L1ME3A LINE L1 -2 6580 6029 * 1806 234 15 8 chr1 32020035 32020510 -210643843 - L1ME3A LINE L1 -3050 3514 3037 1123 290 71 34 chr1 32020518 32021262 -210643091 - L1ME3A LINE L1 -3925 2820 2049 1120 235 20 20 chr1 32021279 32021577 -210642776 - L1ME3A LINE L1 -5747 298 1 773 282 79 97 chr1 32021646 32022050 -210642303 - L1MEd LINE L1 -4979 1140 730 2219 127 0 0 chr1 32022050 32022349 -210642004 - AluSx SINE Alu -8 304 6 773 282 79 97 chr1 32022349 32022607 -210641746 - L1MEd LINE L1 -5389 730 497 1966 119 28 7 chr1 32022607 32022892 -210641461 + AluSg SINE Alu 1 291 -19 773 282 79 97 chr1 32022892 32023144 -210641209 - L1MEd LINE L1 -5622 497 242 3676 151 36 2 chr1 32023160 32023743 -210640610 - LTR26 LTR ERV1 0 603 1 231 313 43 0 chr1 32023999 32024114 -210640239 - L2 LINE L2 -976 2338 2219 551 254 23 0 chr1 32024306 32024436 -210639917 + MIR SINE MIR 60 192 -70 452 345 24 37 chr1 32024476 32024722 -210639631 - L2 LINE L2 -179 3093 2851 636 200 62 7 chr1 32025106 32025259 -210639094 - MIR SINE MIR -1 261 99 270 320 31 10 chr1 32025288 32025385 -210638968 + MIR SINE MIR 26 124 -84 321 331 102 0 chr1 32026384 32026550 -210637803 + MIR SINE MIR 35 217 -45 2115 132 22 20 chr1 32026663 32027020 -210637333 + THE1B LTR MaLR 1 358 -6 342 292 234 0 chr1 32027102 32027239 -210637114 + MIR SINE MIR 80 248 -14 363 306 76 7 chr1 32027431 32027575 -210636778 + L2 LINE L2 3160 3313 0 207 69 0 0 chr1 32028934 32028963 -210635390 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 591 299 117 36 chr1 32028974 32029358 -210634995 - L2 LINE L2 -24 3289 2875 864 261 25 25 chr1 32029381 32029622 -210634731 - MIR SINE MIR -18 244 4 268 256 6 6 chr1 32030137 32030305 -210634048 + (TG)n Simple_repeat Simple_repeat 1 168 0 414 212 0 22 chr1 32030361 32030545 -210633808 + (TG)n Simple_repeat Simple_repeat 1 180 0 477 231 4 15 chr1 32030604 32030885 -210633468 + (TG)n Simple_repeat Simple_repeat 1 277 0 498 287 194 35 chr1 32031693 32032091 -210632262 - L2 LINE L2 -25 3247 2789 825 149 8 0 chr1 32032568 32032689 -210631664 - FLAM_C SINE Alu -21 122 1 216 0 0 0 chr1 32032880 32032904 -210631449 + (A)n Simple_repeat Simple_repeat 1 24 0 530 248 105 66 chr1 32033058 32033423 -210630930 + MLT1I LTR MaLR 22 402 -7 291 292 68 10 chr1 32033922 32034069 -210630284 - MIR SINE MIR -21 187 33 520 258 80 18 chr1 32034079 32034242 -210630111 - MIR SINE MIR -70 192 20 497 274 56 17 chr1 32034387 32034566 -210629787 - MIR SINE MIR -31 231 46 217 284 225 6 chr1 32035400 32035553 -210628800 + MIR SINE MIR 5 190 -72 416 258 39 0 chr1 32035791 32035919 -210628434 + REP3 LTR ERV 1 133 -429 598 262 57 57 chr1 32035925 32036173 -210628180 + REP3 LTR ERV 268 515 -47 424 289 0 0 chr1 32036195 32036285 -210628068 + L2 LINE L2 3223 3312 -1 264 305 42 34 chr1 32036650 32036768 -210627585 + MER5A DNA MER1_type 47 165 -24 184 139 56 0 chr1 32036739 32036775 -210627578 - MER5B DNA MER1_type -125 53 16 * 206 259 52 44 chr1 32037363 32037498 -210626855 + L2 LINE L2 2848 2983 -289 360 274 105 16 chr1 32038159 32038283 -210626070 + MIR SINE MIR 108 242 -20 250 293 151 29 chr1 32038530 32038735 -210625618 + MLT1L LTR MaLR 170 399 -216 1363 221 39 49 chr1 32038845 32039235 -210625118 - MER58D DNA MER1_type 0 386 1 540 261 148 53 chr1 32040275 32040580 -210623773 + MLT1L LTR MaLR 170 519 -96 1363 221 39 49 chr1 32040580 32040970 -210623383 - MER58D DNA MER1_type 0 386 1 540 261 148 53 chr1 32040970 32041043 -210623310 + MLT1L LTR MaLR 519 584 -31 243 189 0 19 chr1 32041215 32041268 -210623085 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 275 214 26 26 chr1 32041979 32042041 -210622312 + CT-rich Low_complexity Low_complexity 4 65 -55 2479 87 0 0 chr1 32042041 32042351 -210622002 - AluY SINE Alu -1 310 1 1552 163 0 19 chr1 32042353 32042611 -210621742 - AluJo SINE Alu -18 294 42 275 214 26 26 chr1 32042611 32042662 -210621691 + CT-rich Low_complexity Low_complexity 65 120 0 562 278 145 39 chr1 32042675 32043082 -210621271 - L2 LINE L2 -14 3299 2850 181 289 84 104 chr1 32043090 32043339 -210621014 - L2 LINE L2 -211 3061 2818 408 292 231 20 chr1 32043426 32043629 -210620724 - MIR SINE MIR 0 262 18 1252 218 148 14 chr1 32043702 32044046 -210620307 - MSTD LTR MaLR -6 390 1 397 241 147 0 chr1 32044773 32044889 -210619464 + MIR SINE MIR 15 147 -115 416 143 65 0 chr1 32045343 32045420 -210618933 + MSTA LTR MaLR 1 82 -344 * 1932 157 107 62 chr1 32045405 32045837 -210618516 - MER66B LTR ERV1 -29 457 7 2064 112 26 40 chr1 32045862 32046210 -210618143 + MSTA LTR MaLR 86 428 0 204 381 60 0 chr1 32046210 32046294 -210618059 - MIR SINE MIR -169 93 5 224 214 60 0 chr1 32046910 32047078 -210617275 + (CCTG)n Simple_repeat Simple_repeat 3 180 0 235 336 145 8 chr1 32047256 32047491 -210616862 + L2 LINE L2 2543 2809 -505 379 292 10 0 chr1 32048304 32048400 -210615953 + MIR SINE MIR 37 133 -75 465 272 9 9 chr1 32048408 32048522 -210615831 - MER20 DNA MER1_type -2 217 104 424 209 68 0 chr1 32048538 32048686 -210615667 + (CCTG)n Simple_repeat Simple_repeat 3 160 0 459 219 67 0 chr1 32048721 32048885 -210615468 + (CCTG)n Simple_repeat Simple_repeat 1 175 0 272 200 59 0 chr1 32048896 32049066 -210615287 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 440 192 0 0 chr1 32049126 32049204 -210615149 - MER20 DNA MER1_type -135 84 7 243 167 0 0 chr1 32049743 32049809 -210614544 + (TG)n Simple_repeat Simple_repeat 2 67 0 466 189 81 9 chr1 32050049 32050160 -210614193 - L2 LINE L2 0 3313 3195 560 257 167 9 chr1 32050181 32050403 -210613950 - MIR SINE MIR 0 262 6 477 305 22 40 chr1 32050527 32050753 -210613600 - MIR SINE MIR 0 262 41 406 302 45 23 chr1 32051245 32051462 -210612891 + MIR SINE MIR 18 241 -21 221 409 1 34 chr1 32051879 32052025 -210612328 - MIR SINE MIR -68 140 20 274 244 372 6 chr1 32052189 32052361 -210611992 + MIR SINE MIR 13 247 -15 1377 94 0 0 chr1 32052361 32053228 -210611125 + (TGG)n Simple_repeat Simple_repeat 1 867 0 480 111 0 0 chr1 32053371 32053443 -210610910 + (TGG)n Simple_repeat Simple_repeat 3 74 0 277 207 218 0 chr1 32053512 32053599 -210610754 - MER91C DNA MER1_type -34 106 1 379 196 47 65 chr1 32053652 32053759 -210610594 + L2 LINE L2 3137 3241 -31 219 170 21 0 chr1 32054427 32054474 -210609879 - L2 LINE L2 -30 3242 3195 624 220 73 62 chr1 32054570 32054787 -210609566 - MIR SINE MIR -23 239 25 482 319 31 0 chr1 32055241 32055444 -210608909 + MLT1I LTR MaLR 2 255 -231 631 301 44 49 chr1 32055886 32056275 -210608078 - L2 LINE L2 0 3272 2886 269 226 0 32 chr1 32056419 32056481 -210607872 + L2 LINE L2 3207 3266 -6 1462 255 13 19 chr1 32057197 32057570 -210606783 - MLT1A2 LTR MaLR 0 374 4 565 309 106 0 chr1 32058080 32058297 -210606056 + MIR SINE MIR 23 262 0 806 242 15 19 chr1 32058439 32058656 -210605697 + MIR SINE MIR 5 213 -49 358 284 1 43 chr1 32058710 32058850 -210605503 - MIR SINE MIR -46 162 27 310 302 28 9 chr1 32059082 32059188 -210605165 - MIR SINE MIR -114 148 41 434 293 80 27 chr1 32059216 32059404 -210604949 - MIR SINE MIR -33 229 32 247 278 0 0 chr1 32060746 32060800 -210603553 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 284 289 133 0 chr1 32060939 32061029 -210603324 - MIR SINE MIR -70 192 91 566 217 7 22 chr1 32061900 32062038 -210602315 - MIR SINE MIR -115 147 12 453 293 0 8 chr1 32062470 32062603 -210601750 - MIR3 SINE MIR -36 172 41 481 230 97 9 chr1 32062740 32062853 -210601500 - L2 LINE L2 0 3313 3191 452 239 123 1 chr1 32063273 32063423 -210600930 + MIR3 SINE MIR 31 198 -10 261 226 183 11 chr1 32063661 32063754 -210600599 + MIR SINE MIR 37 145 -63 196 226 26 13 chr1 32063791 32063859 -210600494 + MIR SINE MIR 49 119 -89 698 333 55 10 chr1 32064326 32064729 -210599624 + L1MC4 LINE L1 5517 5937 -1871 422 297 177 55 chr1 32064954 32065264 -210599089 - L1ME4a LINE L1 -96 6025 5678 228 321 0 0 chr1 32065682 32065738 -210598615 - MIR SINE MIR -199 63 8 1951 125 3 23 chr1 32065954 32066257 -210598096 + AluSx SINE Alu 8 304 -8 922 279 52 18 chr1 32066645 32067153 -210597200 + L2 LINE L2 2563 3087 -226 2059 128 3 0 chr1 32067252 32067549 -210596804 + AluSq SINE Alu 1 298 -15 249 186 119 0 chr1 32067722 32067781 -210596572 - LTR31 LTR ERV1 -266 353 288 1690 174 61 14 chr1 32068832 32069177 -210595176 + MLT2D LTR ERVL 4 364 -50 2147 68 45 3 chr1 32069179 32069471 -210594882 + AluY SINE Alu 1 304 -7 396 0 0 0 chr1 32069490 32069534 -210594819 + (CA)n Simple_repeat Simple_repeat 2 45 0 307 209 9 114 chr1 32069534 32069639 -210594714 + L1MC4 LINE L1 6606 6699 -1343 266 167 56 0 chr1 32069642 32069696 -210594657 + MLT2D LTR ERVL 464 520 0 240 302 13 57 chr1 32070192 32070351 -210594002 + L2 LINE L2 2884 3035 -237 922 303 168 34 chr1 32070351 32070871 -210593482 + L1MEd LINE L1 2 451 -5859 1943 125 32 0 chr1 32070871 32071152 -210593201 + AluSc SINE Alu 1 290 -19 922 303 168 34 chr1 32071152 32071998 -210592355 + L1MEd LINE L1 451 1585 -4725 1052 266 109 107 chr1 32072433 32072818 -210591535 + L1MEd LINE L1 2702 3085 -3044 1814 158 0 10 chr1 32072818 32073110 -210591243 + AluJo SINE Alu 3 291 -21 1052 266 109 107 chr1 32073110 32074437 -210589916 + L1MEd LINE L1 3085 4417 -1712 812 112 8 24 chr1 32074730 32074855 -210589498 + FLAM_C SINE Alu 1 123 -20 249 210 71 6 chr1 32074887 32074977 -210589376 - MIR SINE MIR -76 132 32 456 311 94 30 chr1 32075054 32075560 -210588793 - L2 LINE L2 -47 3225 2694 389 217 182 14 chr1 32075956 32076099 -210588254 - MLT1K LTR MaLR -281 307 141 198 314 83 69 chr1 32076265 32076469 -210587884 + L2 LINE L2 2993 3199 -73 8299 170 107 21 chr1 32076893 32078508 -210585845 + MER52A LTR ERV1 1 1754 -1 460 273 20 107 chr1 32078543 32078768 -210585585 + L1MC4a LINE L1 5610 5645 -476 2117 131 0 3 chr1 32078768 32079081 -210585272 + AluSq SINE Alu 1 312 -1 460 273 20 107 chr1 32079081 32079247 -210585106 + L1MC4a LINE L1 5645 5824 -297 355 281 126 32 chr1 32079406 32079652 -210584701 + L1ME4a LINE L1 5658 5926 -195 366 303 59 7 chr1 32079752 32079904 -210584449 + MIR SINE MIR 48 207 -55 389 222 22 0 chr1 32080736 32080826 -210583527 - L2 LINE L2 -17 3296 3205 1398 136 4 4 chr1 32081013 32081276 -210583077 - AluJo SINE Alu 0 346 84 221 284 68 34 chr1 32081477 32081565 -210582788 - L2 LINE L2 -8 3305 3215 360 0 0 0 chr1 32081908 32081948 -210582405 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 206 30 91 0 chr1 32081948 32081981 -210582372 + T-rich Low_complexity Low_complexity 2 37 0 251 273 0 0 chr1 32082266 32082332 -210582021 + MIR SINE MIR 81 146 -62 575 322 77 0 chr1 32082473 32082706 -210581647 + MIR SINE MIR 2 252 -10 2027 263 69 24 chr1 32084696 32085450 -210578903 + L2 LINE L2 2057 2844 -470 267 79 0 0 chr1 32085546 32085584 -210578769 + (GA)n Simple_repeat Simple_repeat 1 38 0 1478 122 54 0 chr1 32086400 32086621 -210577732 - AluSx SINE Alu -23 289 57 218 333 44 0 chr1 32086728 32086818 -210577535 + L2 LINE L2 2966 3059 -213 188 196 0 20 chr1 32087688 32087739 -210576614 + CT-rich Low_complexity Low_complexity 2 51 0 207 0 0 0 chr1 32088444 32088467 -210575886 + (T)n Simple_repeat Simple_repeat 1 23 0 182 378 94 0 chr1 32088722 32088902 -210575451 - MIR SINE MIR -15 247 51 305 349 35 18 chr1 32089102 32089271 -210575082 + MIR SINE MIR 20 191 -71 583 125 0 0 chr1 32089295 32089383 -210574970 + FRAM SINE Alu 43 130 -46 193 214 0 0 chr1 32089532 32089574 -210574779 + MIR SINE MIR 49 90 -172 185 278 102 0 chr1 32090031 32090139 -210574214 - MIR SINE MIR -80 182 64 571 171 13 38 chr1 32090355 32090597 -210573756 + GA-rich Low_complexity Low_complexity 1 235 0 367 297 16 16 chr1 32091094 32091222 -210573131 + MIR SINE MIR 20 147 -115 262 241 37 32 chr1 32091920 32092048 -210572305 - MIR SINE MIR -94 114 6 276 292 0 18 chr1 32092936 32093049 -210571304 + (TGAA)n Simple_repeat Simple_repeat 1 111 0 477 202 52 9 chr1 32093113 32093258 -210571095 - MIR SINE MIR -48 160 11 454 307 122 67 chr1 32093727 32093981 -210570372 + L3 LINE CR1 1309 1576 -1 228 211 0 0 chr1 32094402 32094440 -210569913 + polypurine Low_complexity Low_complexity 1 38 0 194 283 19 0 chr1 32095708 32095761 -210568592 + L2 LINE L2 3214 3267 -46 228 211 0 0 chr1 32096766 32096804 -210567549 + polypurine Low_complexity Low_complexity 1 38 0 591 289 38 34 chr1 32096811 32097045 -210567308 - MIR SINE MIR -18 244 10 336 255 174 8 chr1 32097122 32097281 -210567072 + MIR SINE MIR 17 192 -56 1080 122 2 9 chr1 32097420 32097816 -210566537 + (TCCA)n Simple_repeat Simple_repeat 2 568 0 240 167 0 0 chr1 32097828 32097876 -210566477 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 347 334 102 34 chr1 32098080 32098536 -210565817 - L2 LINE L2 -179 3093 2616 677 333 171 26 chr1 32098814 32100107 -210564246 + L2 LINE L2 1291 2770 -544 363 331 81 49 chr1 32100284 32100537 -210563816 + L2 LINE L2 2978 3242 -30 1169 62 23 0 chr1 32100537 32100713 -210563640 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 363 331 81 49 chr1 32100713 32100743 -210563610 + L2 LINE L2 3242 3270 -2 579 104 80 0 chr1 32100749 32100912 -210563441 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 450 302 73 0 chr1 32101551 32101743 -210562610 - MIR SINE MIR -24 238 33 261 57 0 0 chr1 32102135 32102170 -210562183 + (CAGCC)n Simple_repeat Simple_repeat 4 38 0 383 300 80 34 chr1 32102333 32102596 -210561757 + L2 LINE L2 2004 2278 -1036 328 335 65 0 chr1 32103309 32103366 -210560987 + MIR SINE MIR 95 147 -115 3075 139 20 16 chr1 32103366 32103861 -210560492 + LOR1a LTR ERV1 1 497 0 328 335 65 0 chr1 32103861 32103958 -210560395 + MIR SINE MIR 147 259 -3 824 104 0 0 chr1 32104033 32104148 -210560205 - AluSg/x SINE Alu -12 298 184 332 323 77 10 chr1 32105274 32105469 -210558884 - MIR SINE MIR -33 229 22 308 117 100 0 chr1 32106063 32106123 -210558230 + L1MA9 LINE L1 6208 6273 -39 25 0 0 0 chr1 32106139 32106164 -210558189 + AT_rich Low_complexity Low_complexity 1 25 0 301 300 86 30 chr1 32106267 32106439 -210557914 + MIR3 SINE MIR 3 180 -62 404 345 75 18 chr1 32106608 32106834 -210557519 + L2 LINE L2 3075 3313 0 820 257 30 45 chr1 32106938 32107203 -210557150 + MIR SINE MIR 2 262 0 231 333 29 29 chr1 32107343 32107448 -210556905 + MIR SINE MIR 27 131 -131 301 311 41 49 chr1 32107560 32107682 -210556671 + L2 LINE L2 3151 3271 -1 281 272 62 0 chr1 32107853 32107934 -210556419 + MIR SINE MIR 88 173 -89 388 354 33 23 chr1 32107971 32108186 -210556167 - L2 LINE L2 -469 2845 2629 288 310 97 41 chr1 32108253 32108402 -210555951 + MIR SINE MIR 5 159 -63 247 323 57 24 chr1 32110346 32110470 -210553883 + L2 LINE L2 3145 3272 0 289 331 90 14 chr1 32110540 32110685 -210553668 + MIR SINE MIR 47 202 -60 372 164 0 0 chr1 32111064 32111131 -210553222 + (CA)n Simple_repeat Simple_repeat 1 67 0 417 280 131 6 chr1 32112304 32112472 -210551881 - MIR SINE MIR -62 200 12 483 296 179 0 chr1 32112516 32112695 -210551658 + MIR SINE MIR 50 260 -2 182 276 48 103 chr1 32113160 32113305 -210551048 - MIR SINE MIR -6 256 120 256 239 30 15 chr1 32113409 32113476 -210550877 + MIR3 SINE MIR 97 164 -44 262 315 176 24 chr1 32114086 32114251 -210550102 - MIR SINE MIR -19 243 54 270 224 95 86 chr1 32114842 32114958 -210549395 + L2 LINE L2 3189 3305 -8 258 234 104 39 chr1 32114973 32115050 -210549303 - MIR SINE MIR -57 205 124 2480 42 3 10 chr1 32115340 32115649 -210548704 - AluY SINE Alu -4 307 1 452 256 24 36 chr1 32116083 32116251 -210548102 + C-rich Low_complexity Low_complexity 6 171 0 311 237 27 0 chr1 32116270 32116420 -210547933 + C-rich Low_complexity Low_complexity 1 154 0 253 238 0 113 chr1 32117588 32117668 -210546685 + MIR3 SINE MIR 97 167 -41 355 178 137 0 chr1 32118162 32118235 -210546118 + MIR SINE MIR 66 148 -114 597 281 60 0 chr1 32118604 32118789 -210545564 - MIR SINE MIR -54 208 13 351 275 162 0 chr1 32118904 32119046 -210545307 + MIR SINE MIR 49 213 -49 355 228 65 0 chr1 32119672 32119764 -210544589 + MIR SINE MIR 86 183 -79 424 248 59 0 chr1 32120203 32120304 -210544049 + MIR SINE MIR 46 152 -110 209 264 8 139 chr1 32120483 32120612 -210543741 - MIR3 SINE MIR -16 192 81 245 247 164 0 chr1 32120631 32120704 -210543649 + MIR SINE MIR 63 147 -115 735 221 77 6 chr1 32121923 32122104 -210542249 + MIR SINE MIR 2 195 -67 364 276 230 7 chr1 32122101 32122253 -210542100 - MIR SINE MIR -57 205 20 * 482 252 11 16 chr1 32122461 32122597 -210541756 + MIR3 SINE MIR 15 150 -81 255 159 0 0 chr1 32122695 32122739 -210541614 + L1ME2 LINE L1 6112 6155 -9 496 253 13 39 chr1 32122868 32123022 -210541331 - MIR SINE MIR -67 195 46 410 289 47 0 chr1 32123262 32123390 -210540963 + L2 LINE L2 3138 3271 -1 236 309 64 18 chr1 32124614 32124724 -210539629 + MIR SINE MIR 28 142 -66 1912 171 7 0 chr1 32124811 32125120 -210539233 - AluJb SINE Alu -1 311 1 384 177 45 30 chr1 32125150 32125253 -210539100 - MLT1I LTR MaLR -2 407 319 271 240 10 10 chr1 32125571 32125671 -210538682 + CT-rich Low_complexity Low_complexity 3 102 0 195 217 22 0 chr1 32125798 32125844 -210538509 - L3b LINE CR1 -2 1581 1535 773 266 49 4 chr1 32126203 32126429 -210537924 + LTR16C LTR ERVL 227 462 -29 188 357 40 50 chr1 32127276 32127475 -210536878 + L2 LINE L2 2177 2373 -941 189 320 27 13 chr1 32127701 32127776 -210536577 + MIR SINE MIR 49 124 -84 297 240 100 10 chr1 32128554 32128654 -210535699 + MIR SINE MIR 32 140 -68 182 324 108 10 chr1 32128865 32128967 -210535386 + L2 LINE L2 2695 2806 -508 322 245 20 87 chr1 32129057 32129253 -210535100 + MLT1K LTR MaLR 386 568 -20 322 328 215 21 chr1 32129360 32129695 -210534658 + L2 LINE L2 2832 3231 -41 320 252 25 0 chr1 32129839 32129958 -210534395 + (TG)n Simple_repeat Simple_repeat 2 123 0 379 258 19 6 chr1 32130338 32130497 -210533856 + (TG)n Simple_repeat Simple_repeat 2 162 0 1500 241 146 25 chr1 32132215 32132729 -210531624 + MLT1K LTR MaLR 13 588 0 184 254 17 51 chr1 32132729 32132788 -210531565 - MIR SINE MIR -115 147 91 409 332 105 18 chr1 32132802 32133031 -210531322 + L2 LINE L2 2938 3186 -86 198 103 0 0 chr1 32133094 32133123 -210531230 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 485 280 30 0 chr1 32133125 32133257 -210531096 - MIR3 SINE MIR -14 194 59 420 315 8 0 chr1 32133616 32133743 -210530610 - L3 LINE CR1 -81 1496 1369 435 210 32 51 chr1 32134432 32134530 -210529823 + L1ME4a LINE L1 5967 6062 -59 1873 171 0 7 chr1 32134530 32134840 -210529513 - AluJo SINE Alu -4 308 1 435 210 32 51 chr1 32134840 32134898 -210529455 + L1ME4a LINE L1 6062 6120 -1 664 325 80 64 chr1 32134899 32135336 -210529017 - L3 LINE CR1 -187 1390 947 288 212 40 111 chr1 32135363 32135462 -210528891 - MIR SINE MIR -139 123 32 895 264 62 65 chr1 32136025 32136238 -210528115 + LTR16A1 LTR ERVL 27 239 -218 2109 228 114 4 chr1 32136238 32136747 -210527606 + MLT1F1 LTR MaLR 1 565 -2 895 264 62 65 chr1 32136747 32136965 -210527388 + LTR16A1 LTR ERVL 239 457 0 262 211 0 0 chr1 32136967 32137019 -210527334 - MIR SINE MIR -141 121 70 268 268 0 14 chr1 32137325 32137396 -210526957 - MIR SINE MIR -119 89 20 272 308 107 35 chr1 32137635 32137804 -210526549 - MIR SINE MIR -12 250 70 191 244 211 0 chr1 32138298 32138388 -210525965 - MIR SINE MIR -66 196 88 * 281 271 57 14 chr1 32138361 32138501 -210525852 - L2 LINE L2 -214 3058 2913 181 123 14 68 chr1 32139049 32139122 -210525231 + GA-rich Low_complexity Low_complexity 5 73 0 517 142 71 0 chr1 32139169 32139324 -210525029 + GA-rich Low_complexity Low_complexity 2 167 0 * 773 234 0 4 chr1 32139306 32139554 -210524799 + G-rich Low_complexity Low_complexity 1 247 0 197 207 0 35 chr1 32139548 32139606 -210524747 + A-rich Low_complexity Low_complexity 1 56 0 * 555 141 0 0 chr1 32139611 32139703 -210524650 + (G)n Simple_repeat Simple_repeat 1 92 0 196 380 0 14 chr1 32140414 32140485 -210523868 + L2 LINE L2 3104 3173 -99 429 247 140 7 chr1 32141368 32141518 -210522835 - L2 LINE L2 -423 2891 2722 263 314 36 36 chr1 32141605 32141742 -210522611 - MIR3 SINE MIR -57 151 15 840 285 0 5 chr1 32142002 32142216 -210522137 + MIR SINE MIR 2 214 -48 341 237 144 0 chr1 32142446 32142543 -210521810 + MIR SINE MIR 148 258 -4 282 56 0 0 chr1 32142625 32142661 -210521692 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 249 278 287 9 chr1 32142757 32142872 -210521481 - L3 LINE CR1 -5 1572 1426 382 399 66 7 chr1 32142925 32143196 -210521157 - L3 LINE CR1 -499 1078 792 494 224 124 58 chr1 32143197 32143420 -210520933 + MIR SINE MIR 8 248 -14 321 284 57 74 chr1 32143716 32143892 -210520461 + L3 LINE CR1 1391 1563 -14 256 246 0 0 chr1 32143986 32144043 -210520310 - MIR SINE MIR -87 121 65 258 270 51 34 chr1 32144140 32144318 -210520035 - Charlie7 DNA MER1_type -17 2595 2415 444 283 17 50 chr1 32144492 32144689 -210519664 - MIR SINE MIR -59 149 3 223 278 48 75 chr1 32144854 32145020 -210519333 - MIR SINE MIR -70 192 34 432 286 164 9 chr1 32145109 32145329 -210519024 - MIR SINE MIR -6 256 3 229 311 126 0 chr1 32145408 32145527 -210518826 + MIR3 SINE MIR 15 148 -60 536 256 108 24 chr1 32146010 32146220 -210518133 + MIR SINE MIR 19 248 -14 294 381 46 0 chr1 32146430 32146603 -210517750 - L2 LINE L2 -192 3080 2900 298 301 28 42 chr1 32146655 32146798 -210517555 - MIR3 SINE MIR -66 142 2 286 298 14 21 chr1 32147188 32147329 -210517024 + (ATGGTG)n Simple_repeat Simple_repeat 6 145 0 448 306 41 24 chr1 32148143 32148313 -210516040 + MIR SINE MIR 28 200 -62 1220 280 51 11 chr1 32148382 32148835 -210515518 + L1ME3A LINE L1 5700 6170 0 237 201 288 50 chr1 32148999 32149138 -210515215 - L2 LINE L2 -251 3062 2891 299 119 169 0 chr1 32149753 32149812 -210514541 + MER2 DNA MER2_type 277 345 0 254 168 142 0 chr1 32150020 32150114 -210514239 + MIR SINE MIR 33 147 -61 2111 121 0 0 chr1 32150786 32151076 -210513277 + AluSx SINE Alu 1 290 -22 314 290 40 40 chr1 32151158 32151282 -210513071 - MIR SINE MIR -79 183 60 220 304 49 29 chr1 32151359 32151461 -210512892 - L2 LINE L2 -216 3056 2953 257 325 68 8 chr1 32151555 32151672 -210512681 + MIR3 SINE MIR 64 187 -21 343 325 146 26 chr1 32151715 32152057 -210512296 + L2 LINE L2 2826 3208 -64 1679 99 126 4 chr1 32152149 32152411 -210511942 - AluSx SINE Alu -18 294 1 3187 218 45 11 chr1 32152445 32153244 -210511109 + L1MC3 LINE L1 6937 7762 -23 1948 157 0 13 chr1 32153579 32153892 -210510461 + AluJo SINE Alu 1 309 -3 743 191 88 52 chr1 32154506 32154700 -210509653 + MER20 DNA MER1_type 1 201 -18 596 312 57 19 chr1 32155031 32155345 -210509008 + MER102b DNA MER1_type 16 341 0 440 202 75 0 chr1 32155365 32155459 -210508894 - MIR SINE MIR -60 148 48 195 257 43 29 chr1 32155585 32155655 -210508698 + L3 LINE CR1 1504 1574 -3 970 232 24 24 chr1 32155702 32155948 -210508405 - MIR SINE MIR -4 258 13 210 297 11 44 chr1 32156049 32156140 -210508213 + L3b LINE CR1 1340 1427 -156 182 306 0 0 chr1 32156271 32156320 -210508033 - MIR SINE MIR -104 104 56 322 220 44 22 chr1 32156802 32156893 -210507460 - MIR SINE MIR -58 150 58 505 311 36 18 chr1 32157323 32157545 -210506808 - MIR SINE MIR -5 257 32 856 251 5 0 chr1 32157575 32157766 -210506587 - MIR SINE MIR -43 219 28 496 207 14 35 chr1 32158982 32159127 -210505226 - MER113 DNA MER1_type? -348 173 32 429 272 44 68 chr1 32159144 32159320 -210505033 + MIR SINE MIR 34 206 -56 216 333 0 14 chr1 32159366 32159438 -210504915 - MIR SINE MIR -108 100 30 2068 203 100 24 chr1 32159654 32160123 -210504230 + MLT1D LTR MaLR 1 505 0 368 291 29 0 chr1 32160214 32160317 -210504036 + MIR SINE MIR 62 167 -95 186 286 8 0 chr1 32161061 32161122 -210503231 - MIR SINE MIR -87 121 59 188 325 75 0 chr1 32161920 32162000 -210502353 + MIR SINE MIR 106 191 -71 195 42 0 0 chr1 32162269 32162293 -210502060 + (GAA)n Simple_repeat Simple_repeat 2 25 0 438 273 114 23 chr1 32162385 32162605 -210501748 + MLT1L LTR MaLR 303 542 -73 538 280 15 0 chr1 32162643 32162775 -210501578 - L2 LINE L2 -46 3267 3134 287 345 7 56 chr1 32162808 32162950 -210501403 + MIR3 SINE MIR 48 182 -26 312 27 0 0 chr1 32163324 32163361 -210500992 + (CA)n Simple_repeat Simple_repeat 1 37 0 1767 176 10 0 chr1 32163840 32164136 -210500217 - AluJo SINE Alu -13 299 1 362 198 126 63 chr1 32164411 32164522 -210499831 - L2 LINE L2 0 3313 3196 444 346 22 22 chr1 32164773 32164952 -210499401 + MIR SINE MIR 9 187 -75 241 304 18 0 chr1 32165606 32165689 -210498664 - MIR SINE MIR -90 172 89 334 345 27 66 chr1 32165913 32166171 -210498182 - L1ME4a LINE L1 -5 6116 5869 189 0 0 0 chr1 32166186 32166207 -210498146 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2043 98 11 0 chr1 32166218 32166492 -210497861 - AluSq SINE Alu -36 277 1 1266 304 49 16 chr1 32166494 32167070 -210497283 - L1MC4a LINE L1 -1958 5850 5256 2414 82 3 0 chr1 32167131 32167435 -210496918 - AluSx SINE Alu -7 305 1 225 127 44 0 chr1 32167823 32167868 -210496485 + MIR SINE MIR 102 149 -59 227 206 0 48 chr1 32167981 32168044 -210496309 - L2 LINE L2 -205 3067 3008 401 272 6 74 chr1 32168123 32168285 -210496068 - MIR SINE MIR -66 196 46 305 237 86 11 chr1 32169050 32169143 -210495210 - MIR SINE MIR -88 120 21 1542 144 11 29 chr1 32169219 32169496 -210494857 + AluJo SINE Alu 35 306 -6 251 219 45 77 chr1 32169523 32169627 -210494726 + MIR3 SINE MIR 79 157 -51 23 0 0 0 chr1 32169917 32169940 -210494413 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr1 32170030 32170057 -210494296 + (CA)n Simple_repeat Simple_repeat 1 27 0 879 263 177 7 chr1 32170123 32170911 -210493442 + L1MC4 LINE L1 6824 7904 -138 606 122 0 0 chr1 32171061 32171143 -210493210 - AluJ/FRAM SINE Alu -14 298 217 2088 136 0 3 chr1 32171153 32171454 -210492899 - AluJb SINE Alu -12 300 1 921 148 0 0 chr1 32171454 32171589 -210492764 - AluJo SINE Alu -177 135 1 259 294 71 0 chr1 32171786 32171912 -210492441 + MIR3 SINE MIR 49 183 -25 321 208 75 47 chr1 32171915 32172021 -210492332 + MIR SINE MIR 33 141 -121 1495 153 52 22 chr1 32172877 32173145 -210491208 + AluJb SINE Alu 1 276 -36 438 69 0 0 chr1 32173151 32173209 -210491144 + (GGAGA)n Simple_repeat Simple_repeat 5 62 0 1798 131 39 23 chr1 32175255 32175543 -210488810 + AluSx SINE Alu 1 296 -16 1455 0 0 32 chr1 32175543 32175729 -210488624 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 1798 131 39 23 chr1 32175729 32175746 -210488607 + AluSx SINE Alu 296 311 -1 215 81 97 32 chr1 32175753 32175815 -210488538 + GA-rich Low_complexity Low_complexity 1 66 0 611 259 25 0 chr1 32176375 32176533 -210487820 - MIR SINE MIR -71 191 30 268 338 140 6 chr1 32176500 32176657 -210487696 + MIR SINE MIR 20 197 -65 * 520 190 344 0 chr1 32177621 32177784 -210486569 + MIR SINE MIR 21 239 -23 558 256 39 118 chr1 32177813 32178168 -210486185 + MLT1K LTR MaLR 97 423 -165 446 266 53 2 chr1 32178288 32178421 -210485932 - MIR SINE MIR -42 166 28 601 273 53 38 chr1 32178526 32178735 -210485618 + MIR SINE MIR 48 259 -3 263 285 36 7 chr1 32178831 32178964 -210485389 - MIR SINE MIR -61 147 13 335 233 14 0 chr1 32179193 32179266 -210485087 + MIR SINE MIR 84 157 -105 4274 164 5 28 chr1 32179298 32179337 -210485016 + L1MB3 LINE L1 5433 5471 -712 1882 149 0 32 chr1 32179337 32179646 -210484707 - AluJb SINE Alu -13 299 1 4274 164 5 28 chr1 32179646 32180354 -210483999 + L1MB3 LINE L1 5471 6193 10 2816 117 9 47 chr1 32180354 32180441 -210483912 + MSTC LTR MaLR 1 90 -338 1866 98 0 128 chr1 32180441 32180500 -210483853 - AluSx SINE Alu 0 312 247 207 0 0 0 chr1 32180500 32180523 -210483830 + (GAGTG)n Simple_repeat Simple_repeat 5 27 0 1866 98 0 128 chr1 32180523 32180551 -210483802 - AluSx SINE Alu -65 247 217 228 67 0 0 chr1 32180551 32180581 -210483772 + (GAGTG)n Simple_repeat Simple_repeat 5 34 0 1866 98 0 128 chr1 32180581 32180609 -210483744 - AluSx SINE Alu -95 217 187 360 0 0 0 chr1 32180609 32180649 -210483704 + (GAGTG)n Simple_repeat Simple_repeat 5 44 0 1866 98 0 128 chr1 32180649 32180889 -210483464 - AluSx SINE Alu -125 187 1 2816 117 9 47 chr1 32180889 32181245 -210483108 + MSTC LTR MaLR 90 427 -1 4274 164 5 28 chr1 32181245 32181257 -210483096 + L1MB3 LINE L1 6192 6176 -7 216 308 112 35 chr1 32181282 32181425 -210482928 - L2 LINE L2 -246 3026 2873 344 357 63 34 chr1 32181776 32182134 -210482219 - L1MCa LINE L1 -2784 3642 1173 393 309 62 62 chr1 32183261 32183455 -210480898 - MIR3 SINE MIR 0 208 15 309 314 17 17 chr1 32184028 32184146 -210480207 - MIR SINE MIR -50 212 95 302 270 35 43 chr1 32184223 32184338 -210480015 - MIR SINE MIR -70 192 79 1833 106 48 4 chr1 32184641 32184944 -210479409 - AluSx SINE Alu 0 315 1 228 326 75 14 chr1 32184999 32185146 -210479207 + MLT1J LTR MaLR 253 408 -103 2304 89 10 0 chr1 32185268 32185572 -210478781 - AluSx SINE Alu -5 307 1 298 363 105 0 chr1 32185580 32185770 -210478583 + MIR SINE MIR 53 262 0 309 265 45 37 chr1 32186335 32186517 -210477836 - MIR3 SINE MIR -60 202 15 268 221 147 21 chr1 32186498 32186593 -210477760 + MIR3 SINE MIR 56 162 -46 * 1728 116 101 0 chr1 32186597 32186874 -210477479 + AluSq SINE Alu 1 305 -8 360 357 76 0 chr1 32186923 32187080 -210477273 + MIR SINE MIR 9 177 -85 2290 63 28 0 chr1 32187621 32187908 -210476445 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 32187914 32187935 -210476418 + AT_rich Low_complexity Low_complexity 1 21 0 697 285 311 10 chr1 32188022 32189315 -210475038 + L2 LINE L2 1805 3313 0 412 288 61 24 chr1 32189318 32189530 -210474823 - L2 LINE L2 -249 3023 2804 350 189 111 11 chr1 32189921 32190011 -210474342 - MIR3 SINE MIR -22 186 88 275 257 63 87 chr1 32190146 32190352 -210474001 - MLT1K LTR MaLR -349 239 39 636 249 3 0 chr1 32191095 32191444 -210472909 + GA-rich Low_complexity Low_complexity 1 350 0 1580 278 64 40 chr1 32191630 32192159 -210472194 - MLT1F LTR MaLR 0 542 1 2156 133 0 0 chr1 32192213 32192521 -210471832 - AluSx SINE Alu -4 308 1 538 293 169 24 chr1 32193366 32193656 -210470697 - L3 LINE CR1 -2 1575 1244 1716 241 103 26 chr1 32193712 32194371 -210469982 + L1ME1 LINE L1 5427 6136 -30 312 267 0 4 chr1 32194576 32194654 -210469699 - MIR SINE MIR -113 95 26 602 313 6 11 chr1 32194897 32195073 -210469280 + MIR SINE MIR 16 190 -72 658 265 6 24 chr1 32195141 32195311 -210469042 - MIR SINE MIR -75 187 21 2199 108 7 0 chr1 32195576 32195881 -210468472 + AluSx SINE Alu 1 307 -5 301 238 20 30 chr1 32195977 32196033 -210468320 + L1ME3 LINE L1 6062 6118 -44 2151 103 0 3 chr1 32196033 32196334 -210468019 + AluSx SINE Alu 1 300 -12 301 238 20 30 chr1 32196334 32196378 -210467975 + L1ME3 LINE L1 6118 6161 -1 2447 64 0 6 chr1 32196392 32196705 -210467648 + AluY SINE Alu 1 311 0 2240 81 24 0 chr1 32197009 32197307 -210467046 + AluY SINE Alu 1 305 -6 615 281 33 67 chr1 32197669 32197939 -210466414 + MIR SINE MIR 2 262 0 1043 208 160 14 chr1 32197989 32198056 -210466297 + MER102b DNA MER1_type 5 61 -1367 189 0 0 0 chr1 32198056 32198077 -210466276 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1043 208 160 14 chr1 32198077 32198302 -210466051 + MER102b DNA MER1_type 61 340 -1 295 310 21 56 chr1 32198315 32198457 -210465896 - MIR3 SINE MIR -47 161 25 650 229 20 0 chr1 32198546 32198699 -210465654 + MIR SINE MIR 92 247 -15 292 238 133 114 chr1 32198765 32198936 -210465417 - MIR SINE MIR -62 146 9 * 443 303 37 32 chr1 32198931 32199119 -210465234 - L2 LINE L2 -1 3312 3124 906 191 6 0 chr1 32199239 32199396 -210464957 + FRAM SINE Alu 1 158 -18 330 202 20 10 chr1 32199396 32199495 -210464858 + GA-rich Low_complexity Low_complexity 1 100 0 376 361 75 14 chr1 32199612 32199931 -210464422 + HAL1 LINE L1 982 1289 -1218 235 102 20 20 chr1 32199931 32199980 -210464373 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 316 300 96 23 chr1 32200018 32200238 -210464115 - L2 LINE L2 -217 3055 2820 306 286 124 10 chr1 32200300 32200493 -210463860 - MIR SINE MIR -21 241 23 216 97 0 0 chr1 32200699 32200730 -210463623 + (CA)n Simple_repeat Simple_repeat 2 32 0 251 323 0 40 chr1 32200781 32200880 -210463473 + HERV30 LTR ERV1 3799 3893 -4364 471 18 0 0 chr1 32201182 32201238 -210463115 + (CA)n Simple_repeat Simple_repeat 2 57 0 237 283 94 9 chr1 32201497 32201603 -210462750 + MIR3 SINE MIR 90 204 -4 446 294 18 76 chr1 32202104 32202216 -210462137 - MIR SINE MIR -47 215 98 1428 158 44 57 chr1 32202216 32202330 -210462023 + AluJo SINE Alu 1 115 -197 2170 112 3 3 chr1 32202330 32202643 -210461710 + AluSq SINE Alu 1 313 0 1428 158 44 57 chr1 32202643 32202661 -210461692 + AluJo SINE Alu 115 132 -180 2100 121 3 0 chr1 32202661 32202959 -210461394 + AluSp SINE Alu 1 299 -14 1428 158 44 57 chr1 32202959 32203141 -210461212 + AluJo SINE Alu 132 312 0 446 294 18 76 chr1 32203141 32203222 -210461131 - MIR SINE MIR -164 98 25 673 274 95 17 chr1 32203407 32203648 -210460705 - MIR SINE MIR 0 262 3 290 339 24 8 chr1 32203889 32203975 -210460378 + MIR SINE MIR 60 150 -112 1436 169 17 0 chr1 32203975 32204206 -210460147 - MER46A DNA MER2_type 0 236 2 290 339 24 8 chr1 32204206 32204243 -210460110 + MIR SINE MIR 150 185 -77 687 259 48 5 chr1 32204438 32204627 -210459726 + MIR SINE MIR 64 260 -2 384 261 97 57 chr1 32204718 32204894 -210459459 - L2 LINE L2 -166 3106 2924 605 186 148 60 chr1 32205552 32205735 -210458618 + MIR SINE MIR 13 211 -51 209 263 126 21 chr1 32206125 32206220 -210458133 - MIR SINE MIR -118 144 40 197 318 35 24 chr1 32206371 32206456 -210457897 + MIR SINE MIR 41 126 -136 374 250 102 23 chr1 32206564 32206692 -210457661 - MIR SINE MIR -74 188 51 785 256 65 24 chr1 32206766 32207012 -210457341 - MIR SINE MIR 0 262 7 37 23 0 0 chr1 32207153 32207197 -210457156 + GC_rich Low_complexity Low_complexity 1 44 0 269 310 132 0 chr1 32207501 32207630 -210456723 - MIR SINE MIR 0 262 117 351 200 0 27 chr1 32207953 32208028 -210456325 - L2 LINE L2 -213 3059 2987 321 310 127 6 chr1 32208041 32208199 -210456154 + MIR SINE MIR 38 214 -48 237 169 13 104 chr1 32208323 32208400 -210455953 - MIR SINE MIR -130 132 63 2217 113 7 0 chr1 32208401 32208710 -210455643 + AluSx SINE Alu 1 311 -1 740 324 69 6 chr1 32208835 32209196 -210455157 - L1ME LINE L1 -354 5767 5384 458 326 99 27 chr1 32209334 32209628 -210454725 + L2 LINE L2 2953 3267 -46 372 272 11 0 chr1 32210229 32210321 -210454032 - MER74C LTR ERVL -358 102 10 1899 127 3 3 chr1 32211072 32211356 -210452997 + AluSx SINE Alu 21 304 -8 342 282 203 12 chr1 32211690 32211853 -210452500 + MIR SINE MIR 20 213 -49 524 256 78 17 chr1 32211920 32212100 -210452253 + MIR3 SINE MIR 17 207 -1 2026 119 0 3 chr1 32212252 32212564 -210451789 + AluSx SINE Alu 1 311 0 351 0 0 0 chr1 32213185 32213224 -210451129 + (TG)n Simple_repeat Simple_repeat 2 40 0 318 347 92 26 chr1 32213448 32213945 -210450408 + L2 LINE L2 2555 3091 -181 25 0 0 0 chr1 32214429 32214454 -210449899 + GC_rich Low_complexity Low_complexity 1 25 0 189 312 190 47 chr1 32215236 32215489 -210448864 - L2 LINE L2 -1 3271 2983 268 307 45 0 chr1 32215674 32215762 -210448591 + L2 LINE L2 3217 3308 -5 238 327 81 31 chr1 32215824 32216084 -210448269 - L2 LINE L2 -739 2575 2303 2292 57 3 10 chr1 32216171 32216497 -210447856 + AluY SINE Alu 1 311 0 420 206 52 0 chr1 32216561 32216658 -210447695 + MIR SINE MIR 34 135 -73 265 273 10 61 chr1 32217270 32217369 -210446984 + L2 LINE L2 3179 3272 0 754 315 24 4 chr1 32217632 32217659 -210446694 + MIR SINE MIR 7 32 -230 1971 137 3 0 chr1 32217659 32217951 -210446402 + AluSx SINE Alu 1 293 -19 754 315 24 4 chr1 32217951 32218174 -210446179 + MIR SINE MIR 32 262 0 514 233 98 37 chr1 32218310 32218473 -210445880 + MER5B DNA MER1_type 1 173 -5 738 189 61 28 chr1 32218486 32218666 -210445687 + MER5A DNA MER1_type 1 186 -3 197 247 101 45 chr1 32218788 32218877 -210445476 - MIR SINE MIR -44 218 125 219 285 51 21 chr1 32219507 32219601 -210444752 + MIR SINE MIR 20 115 -93 219 313 42 0 chr1 32220138 32220234 -210444119 + L2 LINE L2 2745 2844 -470 382 277 12 64 chr1 32220402 32220605 -210443748 - L1M LINE L1 -769 5405 5212 196 347 31 77 chr1 32220637 32220859 -210443494 + L2 LINE L2 2275 2486 -828 401 298 105 0 chr1 32220859 32220983 -210443370 - L1ME3A LINE L1 -17 6153 6017 402 246 16 8 chr1 32220988 32221116 -210443237 - L1MC4 LINE L1 -1339 6983 1995 352 302 47 0 chr1 32221086 32221172 -210443181 - L1MC4 LINE L1 -1339 6983 6894 * 606 251 68 87 chr1 32221172 32221394 -210442959 - L1ME3A LINE L1 -214 5956 5744 2143 95 17 0 chr1 32221394 32221688 -210442665 - AluSg SINE Alu -11 299 1 606 251 68 87 chr1 32221688 32221879 -210442474 - L1ME3A LINE L1 -426 5744 5551 335 275 46 55 chr1 32221875 32221983 -210442370 - L1ME3A LINE L1 -2695 3451 3344 * 2317 51 40 0 chr1 32221983 32222279 -210442074 - AluY SINE Alu -3 308 1 335 275 46 55 chr1 32222279 32222388 -210441965 - L1ME3A LINE L1 -2802 3344 3236 195 42 0 0 chr1 32222610 32222634 -210441719 + (CA)n Simple_repeat Simple_repeat 1 24 0 402 213 0 0 chr1 32223006 32223086 -210441267 - MIR SINE MIR -117 145 66 375 303 16 25 chr1 32223137 32223259 -210441094 - MIR SINE MIR -133 129 9 218 301 18 9 chr1 32223348 32223461 -210440892 - L2 LINE L2 -255 3017 2904 206 370 10 10 chr1 32224152 32224252 -210440101 + MIR SINE MIR 40 139 -123 619 284 57 39 chr1 32224295 32224524 -210439829 - MIR SINE MIR 0 262 30 843 306 164 14 chr1 32224596 32225521 -210438832 - L2 LINE L2 -93 3220 2150 268 207 11 11 chr1 32225523 32225610 -210438743 + GA-rich Low_complexity Low_complexity 3 89 0 194 287 23 58 chr1 32226274 32226361 -210437992 + MIR SINE MIR 71 154 -108 194 114 0 45 chr1 32226465 32226509 -210437844 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 2037 102 48 0 chr1 32226590 32226885 -210437468 + AluSq SINE Alu 1 309 -4 299 219 0 8 chr1 32226897 32227020 -210437333 + GA-rich Low_complexity Low_complexity 1 122 0 550 220 102 99 chr1 32227172 32227604 -210436749 + L1ME4a LINE L1 5547 5979 -142 388 301 6 43 chr1 32227713 32227876 -210436477 - L3b LINE CR1 -253 1330 1174 1964 122 17 11 chr1 32228101 32228388 -210435965 + AluSx SINE Alu 1 289 -23 203 152 0 0 chr1 32330458 32330491 -210333862 + CT-rich Low_complexity Low_complexity 4 36 0 2325 90 0 6 chr1 32330837 32331148 -210333205 + AluSc SINE Alu 1 309 0 209 333 53 61 chr1 32331993 32332107 -210332246 - L2 LINE L2 0 3313 3201 * 216 375 38 0 chr1 32332103 32332237 -210332116 + L2 LINE L2 2876 3017 -296 499 231 139 29 chr1 32332489 32332662 -210331691 + MIR SINE MIR 1 192 -70 4648 245 10 24 chr1 32332915 32334289 -210330064 + L1PA15-16 LINE L1 1710 3064 -3785 426 292 101 34 chr1 32335274 32335483 -210328870 - MIR SINE MIR -32 230 8 181 393 47 0 chr1 32335898 32336005 -210328348 - L2 LINE L2 -995 2319 2208 21 43 0 0 chr1 32336416 32336439 -210327914 + AT_rich Low_complexity Low_complexity 1 23 0 1657 224 51 23 chr1 32336886 32337320 -210327033 - MLT1C LTR MaLR 0 467 22 300 268 65 8 chr1 32338566 32338689 -210325664 - L1MC/D LINE L1 -1993 5815 5686 8725 61 110 11 chr1 32338738 32339978 -210324375 + L1P LINE L1 1 1362 -4784 207 69 0 0 chr1 32340078 32340107 -210324246 + (A)n Simple_repeat Simple_repeat 1 29 0 885 205 0 0 chr1 32340117 32340288 -210324065 + FRAM SINE Alu 1 165 -11 26 57 0 0 chr1 32340646 32340681 -210323672 + AT_rich Low_complexity Low_complexity 1 35 0 2509 71 0 0 chr1 32340681 32340992 -210323361 - AluY SINE Alu 0 311 1 790 196 6 0 chr1 32340999 32341167 -210323186 - L1MC/D LINE L1 -1094 5052 4884 * 836 235 66 12 chr1 32341160 32341403 -210322950 + L1M4 LINE L1 4562 4817 -1329 3945 155 24 27 chr1 32343870 32344833 -210319520 + L1MA8 LINE L1 5058 6022 -269 2229 102 3 10 chr1 32344838 32345141 -210319212 - AluSx SINE Alu -11 301 1 686 322 20 25 chr1 32345437 32345682 -210318671 + LTR16A LTR ERVL 207 450 0 24 53 0 0 chr1 32346343 32346381 -210317972 + AT_rich Low_complexity Low_complexity 1 38 0 2054 163 109 0 chr1 32346687 32347092 -210317261 + ERVL LTR ERVL 3704 4152 -1612 1432 141 5 0 chr1 32347074 32347287 -210317066 + ERVL LTR ERVL 4974 5187 -577 * 482 229 30 15 chr1 32348611 32348742 -210315611 + MER94 DNA DNA 1 133 -1 3001 159 33 28 chr1 32349140 32349465 -210314888 - MER73 LTR ERVL -19 625 294 315 0 0 0 chr1 32349465 32349500 -210314853 + (TC)n Simple_repeat Simple_repeat 2 36 0 3001 159 33 28 chr1 32349500 32349779 -210314574 - MER73 LTR ERVL -350 294 18 595 85 160 0 chr1 32351883 32351977 -210312376 - THE1C LTR MaLR -266 109 1 7813 21 0 0 chr1 32352001 32352981 -210311372 - L1PA3 LINE L1 0 6155 5176 2793 158 22 10 chr1 32353163 32353670 -210310683 + L1PA15 LINE L1 5652 6164 -1 560 270 38 21 chr1 32353726 32354015 -210310338 + HsTC2 DNA Tc2 1540 1833 -65 181 232 161 18 chr1 32354193 32354249 -210310104 - MER5B DNA MER1_type -109 69 6 336 238 78 93 chr1 32354620 32354813 -210309540 + L1M4 LINE L1 1185 1374 -5475 893 158 27 38 chr1 32355391 32355595 -210308758 + THE1C LTR MaLR 171 375 0 2335 75 16 3 chr1 32356088 32356394 -210307959 + AluY SINE Alu 1 310 -1 491 243 51 6 chr1 32356754 32356931 -210307422 - L1M4 LINE L1 -743 5403 5219 1031 245 57 48 chr1 32356946 32357383 -210306970 + L1M4 LINE L1 5384 5824 -1024 194 328 0 0 chr1 32357422 32357486 -210306867 + MIR SINE MIR 166 229 -33 56 16 0 0 chr1 32358052 32358115 -210306238 + GC_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr1 32358688 32358709 -210305644 + AT_rich Low_complexity Low_complexity 1 21 0 303 28 0 0 chr1 32358848 32358884 -210305469 + (TG)n Simple_repeat Simple_repeat 2 37 0 5819 206 29 21 chr1 32358896 32360152 -210304201 + MST-int LTR MaLR 1 1266 -385 21 57 0 0 chr1 32360341 32360376 -210303977 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 32361224 32361254 -210303099 + GC_rich Low_complexity Low_complexity 1 30 0 2479 171 40 6 chr1 32362904 32363377 -210300976 + LTR44 LTR ERV1 31 519 0 415 134 37 24 chr1 32363397 32363479 -210300874 - MER67D LTR ERV1 -427 87 5 386 276 120 126 chr1 32364992 32365467 -210298886 + L1M4c LINE L1 471 1078 -5771 425 307 24 10 chr1 32366723 32366928 -210297425 - L1ME LINE L1 -454 5712 5505 536 310 113 8 chr1 32366931 32367331 -210297022 + L1M4c LINE L1 1677 2118 -4732 485 283 111 51 chr1 32367387 32367740 -210296613 + HsTC2a DNA Tc2 5 378 -366 2247 52 13 0 chr1 32367740 32368046 -210296307 + L1P LINE L1 3758 4067 -2079 1509 211 95 19 chr1 32369063 32369494 -210294859 - L1ME1 LINE L1 -5 6161 5698 8741 38 3 2 chr1 32369627 32370772 -210293581 + L1P LINE L1 2131 3276 -2870 4127 93 5 8 chr1 32370879 32371522 -210292831 + L1P LINE L1 1545 2185 -3961 307 272 79 79 chr1 32371524 32371789 -210292564 + L1M2 LINE L1 862 1126 -5723 1835 172 18 3 chr1 32471960 32472031 -210192322 + Tigger3(Golem) DNA MER2_type 2693 2761 -267 1710 178 0 25 chr1 32472031 32472351 -210192002 - AluJo SINE Alu 0 312 1 1835 172 18 3 chr1 32472351 32472610 -210191743 + Tigger3(Golem) DNA MER2_type 2761 3028 0 2197 86 0 10 chr1 32473448 32473791 -210190562 - AluY SINE Alu 0 311 1 1201 181 25 149 chr1 32473795 32474128 -210190225 - L1MC5 LINE L1 -30 7931 7705 1603 135 0 4 chr1 32474128 32474365 -210189988 + AluJb SINE Alu 61 296 -16 1201 181 25 149 chr1 32474365 32474634 -210189719 - L1MC5 LINE L1 -256 7705 7404 249 334 35 4 chr1 32474778 32474897 -210189456 - MIR SINE MIR -32 176 51 620 241 187 1 chr1 32475514 32475703 -210188650 - MIR SINE MIR 0 262 41 199 269 19 0 chr1 32475790 32475842 -210188511 - MIR SINE MIR -110 152 100 239 308 51 0 chr1 32476104 32476182 -210188171 - MIR3 SINE MIR -49 159 78 2041 130 0 16 chr1 32476558 32476866 -210187487 - AluSx SINE Alu -9 303 1 216 362 96 10 chr1 32476950 32477149 -210187204 + L3 LINE CR1 1256 1471 -106 569 276 87 1 chr1 32477310 32477520 -210186833 - MIR SINE MIR -32 230 5 253 41 0 61 chr1 32477903 32477952 -210186401 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 234 211 35 0 chr1 32481938 32481995 -210182358 - MIR SINE MIR -46 216 158 515 224 143 0 chr1 32482009 32482156 -210182197 - MER104 DNA Tc2 -6 174 7 298 220 201 1 chr1 32482163 32482267 -210182086 - MIR SINE MIR -62 146 35 181 250 0 0 chr1 32483052 32483092 -210181261 - L2 LINE L2 -23 3249 3210 * 512 255 68 25 chr1 32483086 32483247 -210181106 - MIR SINE MIR -83 179 12 560 264 67 14 chr1 32484129 32484337 -210180016 + MIR SINE MIR 29 247 -15 553 343 33 0 chr1 32484434 32484647 -210179706 - MIR SINE MIR -27 235 16 392 297 153 12 chr1 32485712 32485988 -210178365 - L1ME4a LINE L1 -22 6099 5734 721 231 0 0 chr1 32486241 32486375 -210177978 + MER94 DNA DNA 1 134 0 779 232 0 12 chr1 32487221 32487389 -210176964 - MER58A DNA MER1_type -15 209 44 1937 132 7 4 chr1 32487389 32487699 -210176654 + AluSx SINE Alu 1 311 0 1548 192 0 45 chr1 32488565 32488873 -210175480 - AluJo SINE Alu -18 294 1 1506 118 9 0 chr1 32488878 32489106 -210175247 - AluSg/x SINE Alu 0 310 81 759 198 127 19 chr1 32489109 32489377 -210174976 - L1M4 LINE L1 -941 5205 4909 2011 235 42 35 chr1 32489380 32489711 -210174642 - L1M4 LINE L1 -1679 4467 4140 1176 149 36 85 chr1 32489711 32489959 -210174394 + MER46A DNA MER2_type 1 236 0 2011 235 42 35 chr1 32489959 32490168 -210174185 - L1M4 LINE L1 -2006 4140 3920 2141 117 0 0 chr1 32490168 32490475 -210173878 - AluY SINE Alu -4 307 1 2011 235 42 35 chr1 32490475 32490583 -210173770 - L1M4 LINE L1 -2226 3920 3814 270 136 0 0 chr1 32490778 32490822 -210173531 + (CA)n Simple_repeat Simple_repeat 2 45 0 289 303 139 0 chr1 32491456 32491578 -210172775 - MIR SINE MIR -19 243 105 428 252 32 32 chr1 32492590 32492713 -210171640 + MIR SINE MIR 61 183 -79 305 267 23 29 chr1 32492816 32492961 -210171392 - MIR SINE MIR -66 196 54 516 247 108 6 chr1 32493205 32493363 -210170990 + MIR SINE MIR 31 204 -58 390 276 10 0 chr1 32493428 32493526 -210170827 - MIR3 SINE MIR -17 191 93 267 362 26 20 chr1 32493700 32493852 -210170501 + MIR3 SINE MIR 41 193 -15 459 299 9 0 chr1 32493873 32494034 -210170319 + L1ME4a LINE L1 5683 5848 -292 249 224 153 20 chr1 32494176 32494274 -210170079 + MIR SINE MIR 63 173 -89 326 286 121 13 chr1 32494337 32494568 -210169785 + L1ME4a LINE L1 5861 6116 -5 227 267 170 22 chr1 32495186 32495321 -210169032 + L2 LINE L2 2848 3002 -270 277 246 0 0 chr1 32495338 32495395 -210168958 - L2 LINE L2 -12 3301 3245 237 283 131 0 chr1 32495596 32495695 -210168658 - MIR SINE MIR -70 192 81 549 258 147 20 chr1 32495870 32496068 -210168285 - MIR SINE MIR -20 242 20 197 333 30 0 chr1 32496411 32496510 -210167843 + MIR SINE MIR 52 153 -109 283 282 73 0 chr1 32496738 32496862 -210167491 + L2 LINE L2 3136 3268 -4 252 271 56 19 chr1 32496906 32497013 -210167340 + MIR3 SINE MIR 68 178 -30 727 272 24 5 chr1 32498135 32498354 -210165999 + MIR SINE MIR 5 227 -35 246 309 127 9 chr1 32498348 32498458 -210165895 + MIR SINE MIR 66 188 -74 * 3277 171 41 28 chr1 32498754 32499114 -210165239 + L1MB8 LINE L1 5461 5815 -363 2157 113 14 0 chr1 32499114 32499406 -210164947 + AluSq SINE Alu 1 296 -17 3277 171 41 28 chr1 32499406 32499748 -210164605 + L1MB8 LINE L1 5815 6172 -6 293 174 159 0 chr1 32499771 32499840 -210164513 - MIR SINE MIR -135 127 48 2017 102 88 0 chr1 32500681 32500964 -210163389 + AluSg SINE Alu 1 308 -2 208 218 40 89 chr1 32501523 32501624 -210162729 - MIR SINE MIR -62 146 51 554 160 11 17 chr1 32502341 32502522 -210161831 + (CA)n Simple_repeat Simple_repeat 1 180 0 438 222 42 21 chr1 32502524 32502668 -210161685 + (CCCA)n Simple_repeat Simple_repeat 1 147 0 491 197 6 0 chr1 32502669 32502847 -210161506 + (CA)n Simple_repeat Simple_repeat 1 179 0 330 196 0 0 chr1 32502858 32502965 -210161388 + (CA)n Simple_repeat Simple_repeat 1 107 0 505 279 123 31 chr1 32503965 32504291 -210160062 + L2 LINE L2 2952 3307 -6 526 239 72 0 chr1 32504615 32504753 -210159600 + MIR SINE MIR 94 241 -21 331 300 54 0 chr1 32504808 32504938 -210159415 + MIR SINE MIR 108 244 -18 192 182 0 0 chr1 32505288 32505332 -210159021 + (CA)n Simple_repeat Simple_repeat 1 44 0 432 286 101 28 chr1 32505427 32505605 -210158748 - MIR SINE MIR -19 243 53 214 324 27 0 chr1 32505666 32505740 -210158613 - MIR SINE MIR -110 152 77 217 170 21 21 chr1 32505799 32505846 -210158507 - MIR SINE MIR -111 151 105 232 128 0 64 chr1 32505883 32505930 -210158423 + (CCCCCA)n Simple_repeat Simple_repeat 5 48 0 290 234 78 0 chr1 32506037 32506114 -210158239 + MIR SINE MIR 67 149 -113 240 227 8 172 chr1 32506112 32506183 -210158170 - MIR SINE MIR -3 259 217 * 2232 99 0 3 chr1 32506183 32506475 -210157878 - AluSc SINE Alu -14 295 5 240 227 8 172 chr1 32506475 32506531 -210157822 - MIR SINE MIR -45 217 153 411 289 36 36 chr1 32507221 32507387 -210156966 - MIR SINE MIR -89 173 8 181 237 119 17 chr1 32507737 32507796 -210156557 + L2 LINE L2 3191 3255 -58 1984 146 0 3 chr1 32510493 32510787 -210153566 + AluSx SINE Alu 1 293 -19 212 264 46 46 chr1 32510995 32511082 -210153271 - MIR3 SINE MIR -9 199 113 269 280 70 70 chr1 32511247 32511461 -210152892 - L2 LINE L2 -155 3117 2904 1789 161 0 4 chr1 32511529 32511796 -210152557 + AluSx SINE Alu 30 295 -17 534 306 8 0 chr1 32511985 32512145 -210152208 + MIR3 SINE MIR 3 166 -42 241 253 40 13 chr1 32512180 32512255 -210152098 + MIR3 SINE MIR 117 193 -15 851 259 63 0 chr1 32512512 32512717 -210151636 + MIR SINE MIR 28 245 -17 187 321 0 0 chr1 32513118 32513174 -210151179 + L2 LINE L2 3002 3057 -215 2296 120 0 0 chr1 32513831 32514132 -210150221 - AluSg SINE Alu -6 304 4 2152 101 14 0 chr1 32514134 32514420 -210149933 - AluSg1 SINE Alu -19 290 1 269 245 0 0 chr1 32514620 32514673 -210149680 + L2 LINE L2 3214 3266 -6 410 167 13 0 chr1 32514751 32514829 -210149524 - LTR5 LTR ERVK -889 80 2 655 303 25 0 chr1 32514863 32515061 -210149292 + MIR SINE MIR 59 261 -1 186 328 52 0 chr1 32515081 32515139 -210149214 + L2 LINE L2 3119 3179 -93 209 262 0 0 chr1 32515826 32515887 -210148466 + MIR SINE MIR 60 120 -142 545 185 127 46 chr1 32516617 32516790 -210147563 - MIR SINE MIR -56 206 20 244 241 90 45 chr1 32517696 32517829 -210146524 - L2 LINE L2 0 3272 3134 321 246 17 42 chr1 32518499 32518617 -210145736 - MIR3 SINE MIR -86 122 8 * 743 173 16 103 chr1 32518590 32518692 -210145661 + MIR SINE MIR 46 126 -136 1937 143 14 3 chr1 32518692 32518985 -210145368 + AluSx SINE Alu 1 296 -16 743 173 16 103 chr1 32518985 32519067 -210145286 + MIR SINE MIR 126 214 -48 205 191 0 0 chr1 32519226 32519268 -210145085 + T-rich Low_complexity Low_complexity 1 42 0 240 252 97 19 chr1 32520259 32520362 -210143991 + MIR SINE MIR 19 129 -133 188 333 40 13 chr1 32521099 32521174 -210143179 - MIR3 SINE MIR -129 79 3 268 324 56 9 chr1 32521592 32521700 -210142653 + MIR3 SINE MIR 46 158 -50 373 222 103 16 chr1 32521861 32521987 -210142366 + MIR SINE MIR 45 181 -81 2300 104 0 10 chr1 32522600 32522897 -210141456 + AluSx SINE Alu 6 299 -13 457 202 75 28 chr1 32523340 32523499 -210140854 + MER31-int LTR ERV1 1044 1392 -394 2181 103 7 14 chr1 32523527 32523817 -210140536 - AluSx SINE Alu -24 288 1 251 143 0 43 chr1 32523817 32523887 -210140466 + MER31-int LTR ERV1 1137 1203 -3733 395 272 0 22 chr1 32523892 32523984 -210140369 + L1MC4 LINE L1 6614 6703 -1339 971 214 52 32 chr1 32524091 32524408 -210139945 - MER31-int LTR ERV1 -553 4383 4148 2370 209 91 79 chr1 32524411 32524705 -210139648 - MER31-int LTR ERV1 -1170 5161 4872 2288 76 7 40 chr1 32524705 32525009 -210139344 - AluY SINE Alu -17 294 1 2370 209 91 79 chr1 32525009 32525920 -210138433 - MER31-int LTR ERV1 -1459 4872 3973 1691 110 165 4 chr1 32525920 32526174 -210138179 + AluSx SINE Alu 1 295 -17 2370 209 91 79 chr1 32526174 32526654 -210137699 - MER31-int LTR ERV1 -2358 3973 2061 1492 208 13 36 chr1 32526656 32526964 -210137389 - AluJb SINE Alu -11 301 1 24 0 0 0 chr1 32526964 32526988 -210137365 + AT_rich Low_complexity Low_complexity 1 24 0 1590 160 0 11 chr1 32526988 32527263 -210137090 - AluSx SINE Alu 0 312 41 706 154 62 46 chr1 32527600 32527730 -210136623 - FLAM_C SINE Alu -10 133 2 22 0 0 0 chr1 32527733 32527755 -210136598 + AT_rich Low_complexity Low_complexity 1 22 0 364 252 233 0 chr1 32528066 32528225 -210136128 - MIR SINE MIR 0 262 67 2038 134 6 22 chr1 32528606 32528920 -210135433 - AluSx SINE Alu -1 311 3 1357 261 74 16 chr1 32530622 32531198 -210133155 + L1M4 LINE L1 3362 3896 -2250 185 192 13 90 chr1 32534170 32534248 -210130105 - L2 LINE L2 -1259 2055 1984 251 273 7 60 chr1 32534714 32534864 -210129489 + GA-rich Low_complexity Low_complexity 1 142 0 970 130 0 0 chr1 32535226 32535357 -210128996 - AluJb SINE Alu -181 131 1 2204 77 0 31 chr1 32535377 32535664 -210128689 + AluY SINE Alu 1 278 -33 198 71 0 0 chr1 32535665 32535693 -210128660 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 238 115 0 0 chr1 32535708 32535760 -210128593 + L1MA2 LINE L1 6110 6161 -143 2464 72 0 10 chr1 32535994 32536298 -210128055 + AluY SINE Alu 1 301 -10 1010 161 19 0 chr1 32536314 32536475 -210127878 + AluJb SINE Alu 140 303 -9 183 279 27 12 chr1 32536760 32536844 -210127509 - MIR SINE MIR -68 140 61 248 273 15 0 chr1 32537295 32537361 -210126992 + C-rich Low_complexity Low_complexity 5 71 0 530 250 85 17 chr1 32537548 32537724 -210126629 + MIR3 SINE MIR 7 194 -14 1691 156 6 68 chr1 32537980 32538301 -210126052 - AluJb SINE Alu -11 301 1 492 221 221 0 chr1 32538364 32538495 -210125858 + MER69A DNA AcHobo 1 160 -17 197 288 100 0 chr1 32538794 32538874 -210125479 + MIR SINE MIR 27 114 -94 499 257 29 0 chr1 32539477 32539617 -210124736 + MIR SINE MIR 1 144 -118 325 302 0 0 chr1 32539726 32539832 -210124521 + MIR SINE MIR 155 260 -2 1274 112 6 0 chr1 32540359 32540529 -210123824 - AluY SINE Alu -126 185 15 734 197 0 0 chr1 32540545 32540677 -210123676 - FLAM_C SINE Alu 0 133 2 417 194 83 46 chr1 32540679 32540787 -210123566 - AluJo SINE Alu -167 145 34 761 134 8 30 chr1 32540904 32541038 -210123315 - FLAM_C SINE Alu -1 132 2 2239 127 0 0 chr1 32541075 32541409 -210122944 + AluSx SINE Alu 1 312 0 317 231 124 0 chr1 32541410 32541531 -210122822 + L1M4 LINE L1 2463 2598 -3548 1646 185 45 0 chr1 32541543 32541830 -210122523 + AluJo SINE Alu 9 308 -4 2418 82 13 0 chr1 32541832 32542137 -210122216 + AluY SINE Alu 1 309 -2 229 277 73 39 chr1 32542163 32542215 -210122138 + L1M4 LINE L1 2859 2908 -3238 2385 96 3 0 chr1 32542215 32542517 -210121836 + AluSx SINE Alu 1 303 -9 229 277 73 39 chr1 32542517 32542724 -210121629 + L1M4 LINE L1 2908 3127 -3019 486 148 0 34 chr1 32542967 32543055 -210121298 + AluJ/FLAM SINE Alu 2 86 -226 493 224 43 0 chr1 32543055 32543171 -210121182 - AluSg/x SINE Alu -109 203 83 485 204 0 0 chr1 32543175 32543310 -210121043 - AluJb SINE Alu 0 325 191 468 51 0 0 chr1 32543328 32543387 -210120966 + (TA)n Simple_repeat Simple_repeat 2 60 0 2168 139 3 3 chr1 32543390 32543700 -210120653 - AluSg SINE Alu 0 310 1 658 223 0 0 chr1 32543835 32543974 -210120379 + AluJb SINE Alu 137 275 -37 2234 92 0 24 chr1 32543986 32544279 -210120074 - AluSx SINE Alu -12 300 15 24 32 0 0 chr1 32544279 32544310 -210120043 + AT_rich Low_complexity Low_complexity 1 31 0 453 299 48 74 chr1 32544310 32544414 -210119939 + L1M4 LINE L1 4076 4181 -1965 1995 144 0 33 chr1 32544414 32544720 -210119633 + AluSx SINE Alu 1 296 -16 2132 129 0 0 chr1 32544728 32545008 -210119345 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr1 32545009 32545030 -210119323 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 453 299 48 74 chr1 32545030 32545225 -210119128 + L1M4 LINE L1 4187 4378 -1768 1435 198 4 43 chr1 32545227 32545361 -210118992 + AluJb SINE Alu 1 120 -192 2150 93 25 56 chr1 32545361 32545684 -210118669 + AluSq SINE Alu 1 313 0 1435 198 4 43 chr1 32545684 32545827 -210118526 + AluJb SINE Alu 120 267 -45 742 184 0 7 chr1 32545931 32546072 -210118281 + FLAM_C SINE Alu 2 141 -2 2202 105 0 23 chr1 32546238 32546542 -210117811 + AluY SINE Alu 1 297 -14 368 365 57 7 chr1 32546556 32546857 -210117496 + L1M4 LINE L1 4711 5026 -1120 1048 115 53 43 chr1 32546883 32547092 -210117261 - Tigger7 DNA MER2_type -2 2485 2275 904 148 181 5 chr1 32547083 32547293 -210117060 + MER49 LTR ERV1 6 252 -671 * 983 106 8 0 chr1 32547295 32547427 -210116926 + AluSq/x SINE Alu 1 133 -180 3256 169 16 61 chr1 32547433 32547520 -210116833 + MER49 LTR ERV1 244 333 -590 2294 125 3 0 chr1 32547520 32547831 -210116522 - AluSx SINE Alu 0 312 1 3256 169 16 61 chr1 32547831 32548231 -210116122 + MER49 LTR ERV1 333 694 -229 2553 64 0 0 chr1 32548231 32548527 -210115826 + AluY SINE Alu 1 296 -15 3256 169 16 61 chr1 32548527 32548725 -210115628 + MER49 LTR ERV1 694 899 -24 1696 147 3 103 chr1 32548732 32548870 -210115483 + AluJo SINE Alu 1 91 -211 2141 139 3 16 chr1 32548870 32549187 -210115166 + AluSq SINE Alu 1 313 0 1696 147 3 103 chr1 32549187 32549368 -210114985 + AluJo SINE Alu 90 288 -14 775 291 7 28 chr1 32549561 32549846 -210114507 - L2 LINE L2 -571 2743 2465 2151 123 20 0 chr1 32549846 32550148 -210114205 + AluSx SINE Alu 1 308 -4 421 219 89 32 chr1 32550228 32550351 -210114002 + MER97a DNA MER1_type? 48 177 -717 2275 106 7 0 chr1 32550351 32550652 -210113701 + AluSp SINE Alu 1 303 -10 2112 127 14 0 chr1 32550761 32551053 -210113300 + AluSg SINE Alu 1 296 -14 320 273 36 55 chr1 32551211 32551321 -210113032 - L2 LINE L2 -995 2319 2212 1372 206 0 4 chr1 32551341 32551594 -210112759 - AluJb SINE Alu -2 310 59 2234 120 0 0 chr1 32551628 32551936 -210112417 - AluSg SINE Alu -2 308 1 316 291 58 86 chr1 32552026 32552209 -210112144 + L2 LINE L2 2215 2391 -923 2059 136 0 0 chr1 32552209 32552518 -210111835 - AluSx SINE Alu 0 309 1 316 291 58 86 chr1 32552518 32552610 -210111743 + L2 LINE L2 2391 2484 -830 315 215 0 0 chr1 32552677 32552742 -210111611 + MIR SINE MIR 173 237 -25 2524 62 0 20 chr1 32552839 32553145 -210111208 + AluSg SINE Alu 2 301 -9 24 53 0 0 chr1 32553521 32553559 -210110794 + AT_rich Low_complexity Low_complexity 1 38 0 1958 159 0 0 chr1 32553564 32553859 -210110494 + AluSx SINE Alu 6 300 -12 1888 133 65 0 chr1 32553979 32554258 -210110095 + AluSg SINE Alu 7 303 -7 3666 170 19 30 chr1 32554327 32554352 -210110001 - L1MB3 LINE L1 -1 6182 6158 2094 152 0 0 chr1 32554352 32554662 -210109691 + AluSx SINE Alu 1 310 -2 3666 170 19 30 chr1 32554662 32554673 -210109680 - L1MB3 LINE L1 -25 6158 6148 1589 170 31 50 chr1 32554673 32554793 -210109560 + AluJo SINE Alu 1 122 -190 207 0 0 0 chr1 32554793 32554816 -210109537 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1589 170 31 50 chr1 32554816 32554861 -210109492 + AluJo SINE Alu 122 166 -146 2100 128 3 13 chr1 32554861 32555174 -210109179 - AluSx SINE Alu -2 310 1 1589 170 31 50 chr1 32555174 32555325 -210109028 + AluJo SINE Alu 166 312 0 3666 170 19 30 chr1 32555325 32555864 -210108489 - L1MB3 LINE L1 -35 6148 5613 2453 70 0 3 chr1 32555864 32556165 -210108188 - AluY SINE Alu -11 300 1 3666 170 19 30 chr1 32556165 32556330 -210108023 - L1MB3 LINE L1 -570 5613 5448 1449 209 7 20 chr1 32556440 32556737 -210107616 - AluJo SINE Alu -15 297 5 806 168 0 0 chr1 32556808 32556927 -210107426 + FLAM_C SINE Alu 1 119 -24 1463 170 3 73 chr1 32556941 32557258 -210107095 + AluJb SINE Alu 1 295 -17 2121 122 3 10 chr1 32557926 32558230 -210106123 - AluSg SINE Alu -8 302 1 1456 214 7 0 chr1 32558804 32558819 -210105534 - AluJo SINE Alu -11 301 288 225 0 0 0 chr1 32558819 32558844 -210105509 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1456 214 7 0 chr1 32558844 32559127 -210105226 - AluJo SINE Alu -24 288 1 2288 87 0 31 chr1 32559127 32559448 -210104905 - AluY SINE Alu 0 311 1 437 169 0 56 chr1 32559451 32559540 -210104813 - FRAM SINE Alu -18 158 75 364 229 8 76 chr1 32559640 32559707 -210104646 - AluJo SINE Alu -121 181 124 2311 100 0 0 chr1 32559707 32560006 -210104347 + AluY SINE Alu 3 301 -10 364 229 8 76 chr1 32560006 32560056 -210104297 - AluJo SINE Alu -178 124 72 657 157 46 0 chr1 32560233 32560341 -210104012 - FLAM_C SINE Alu -18 125 13 1518 102 199 38 chr1 32560503 32560540 -210103813 - AluSg1 SINE Alu 0 309 279 234 0 0 0 chr1 32560540 32560566 -210103787 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1518 102 199 38 chr1 32560566 32560794 -210103559 - AluSg1 SINE Alu -30 279 1 2111 101 7 30 chr1 32560796 32561094 -210103259 - AluSq SINE Alu -20 293 3 997 181 6 16 chr1 32561095 32561277 -210103076 - L1MC1 LINE L1 -5 6328 6149 1116 195 24 24 chr1 32561283 32561529 -210102824 + MER58B DNA MER1_type 46 291 -50 477 118 0 0 chr1 32561529 32561597 -210102756 + AluSq/x SINE Alu 37 104 -208 1219 187 29 29 chr1 32561620 32561726 -210102627 - AluJo SINE Alu -66 246 141 2490 68 3 0 chr1 32561726 32562021 -210102332 - AluSp SINE Alu -12 301 6 1219 187 29 29 chr1 32562021 32562160 -210102193 - AluJo SINE Alu -170 142 1 207 234 43 0 chr1 32562534 32562581 -210101772 + CT-rich Low_complexity Low_complexity 5 53 0 688 146 0 16 chr1 32562741 32562864 -210101489 + AluJo/FLAM SINE Alu 2 122 -190 1327 152 0 9 chr1 32562867 32563077 -210101276 - AluSg/x SINE Alu -20 290 83 301 114 0 0 chr1 32563077 32563121 -210101232 - AluY SINE Alu -52 249 206 1088 103 0 20 chr1 32563121 32563267 -210101086 - AluSg SINE Alu -167 143 1 1199 170 0 0 chr1 32563273 32563455 -210100898 + AluJb SINE Alu 127 308 -4 1293 160 0 9 chr1 32564229 32564442 -210099911 + AluSq SINE Alu 85 295 -18 207 0 0 0 chr1 32565288 32565311 -210099042 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1984 109 3 41 chr1 32565311 32565605 -210098748 - AluSx SINE Alu -29 283 1 2432 60 3 10 chr1 32565616 32565914 -210098439 - AluY SINE Alu -15 296 1 2378 102 0 0 chr1 32566545 32566850 -210097503 - AluSx SINE Alu -7 305 1 1715 162 22 29 chr1 32566857 32567171 -210097182 - AluJb SINE Alu 0 312 1 2167 130 3 0 chr1 32567200 32567499 -210096854 + AluSx SINE Alu 1 300 -12 1106 173 0 0 chr1 32567499 32567678 -210096675 + AluJb SINE Alu 134 312 0 2213 100 0 7 chr1 32567723 32568014 -210096339 + AluSq SINE Alu 14 302 -11 248 242 71 40 chr1 32569229 32569328 -210095025 - MIR SINE MIR -44 218 117 207 0 0 0 chr1 32569735 32569758 -210094595 + (T)n Simple_repeat Simple_repeat 1 23 0 392 129 0 0 chr1 32569948 32570010 -210094343 - AluSp/q SINE Alu -1 302 241 2175 85 39 0 chr1 32570309 32570591 -210093762 + AluSg SINE Alu 1 293 -17 2187 109 0 16 chr1 32570605 32570908 -210093445 + AluSx SINE Alu 1 298 -14 1122 150 173 41 chr1 32570943 32571209 -210093144 + AluJo SINE Alu 2 302 0 2514 68 0 0 chr1 32571297 32571593 -210092760 + AluY SINE Alu 1 296 -15 2373 90 3 0 chr1 32572006 32572306 -210092047 + AluSp SINE Alu 1 301 -12 28 29 0 0 chr1 32572455 32572490 -210091863 + AT_rich Low_complexity Low_complexity 1 35 0 1628 174 50 0 chr1 32573123 32573405 -210090948 - AluSx SINE Alu -16 296 1 2461 71 0 3 chr1 32573490 32573785 -210090568 + AluSx SINE Alu 13 306 -6 961 180 6 17 chr1 32573917 32574078 -210090275 - AluSq SINE Alu -18 295 135 2262 114 0 0 chr1 32574078 32574375 -210089978 - AluSx SINE Alu -15 297 1 2241 110 10 0 chr1 32574386 32574685 -210089668 - AluSx SINE Alu -10 302 1 2462 87 0 0 chr1 32574835 32575146 -210089207 + AluY SINE Alu 1 311 0 2372 88 10 0 chr1 32575342 32575650 -210088703 - AluY SINE Alu 0 311 1 1940 125 7 7 chr1 32575660 32575948 -210088405 - AluSq SINE Alu -25 288 1 1909 154 7 3 chr1 32576413 32576699 -210087654 - AluSg SINE Alu -23 287 1 1659 117 135 8 chr1 32576839 32577105 -210087248 + AluSg SINE Alu 1 300 0 2272 93 3 7 chr1 32577204 32577504 -210086849 - AluSp SINE Alu -14 299 1 2197 125 0 10 chr1 32577505 32577809 -210086544 - AluSx SINE Alu -11 301 1 28 48 0 0 chr1 32577978 32578020 -210086333 + AT_rich Low_complexity Low_complexity 1 42 0 719 160 25 0 chr1 32578022 32578141 -210086212 - FLAM_C SINE Alu -20 123 2 1921 116 27 24 chr1 32578171 32578465 -210085888 + AluSx SINE Alu 1 295 -17 2036 118 34 0 chr1 32578511 32578808 -210085545 + AluSg SINE Alu 1 307 -3 552 110 0 12 chr1 32578840 32578922 -210085431 + AluY SINE Alu 209 289 -22 1770 145 122 33 chr1 32578941 32579187 -210085166 - L1MB8 LINE L1 -70 6108 5885 2394 66 7 3 chr1 32579187 32579489 -210084864 - AluY SINE Alu -8 303 1 1770 145 122 33 chr1 32579489 32579670 -210084683 - L1MB8 LINE L1 -293 5885 5643 1809 107 7 59 chr1 32580111 32580401 -210083952 + AluSq SINE Alu 23 297 -16 1146 146 203 29 chr1 32580589 32580835 -210083518 + AluSx SINE Alu 1 289 -13 250 256 68 26 chr1 32580868 32580985 -210083368 + L1ME4a LINE L1 5956 6077 -44 2219 116 0 3 chr1 32581254 32581586 -210082767 - AluSx SINE Alu 0 312 1 2089 197 36 2 chr1 32581746 32582158 -210082195 - MSTB LTR MaLR 0 426 1 736 165 0 24 chr1 32582232 32582359 -210081994 + FLAM_C SINE Alu 1 124 -9 43 20 0 0 chr1 32582811 32582861 -210081492 + AT_rich Low_complexity Low_complexity 1 50 0 459 188 60 34 chr1 32582862 32582979 -210081374 - FLAM_A SINE Alu -13 120 1 690 161 0 51 chr1 32583389 32583526 -210080827 + FLAM_C SINE Alu 1 130 -3 272 128 0 0 chr1 32583603 32583650 -210080703 - AluSp/q SINE Alu -2 301 255 1988 124 7 36 chr1 32583684 32583990 -210080363 - AluSx SINE Alu -15 297 1 2310 90 0 17 chr1 32584086 32584386 -210079967 + AluY SINE Alu 1 295 -16 1071 219 13 9 chr1 32584399 32584623 -210079730 + AluJb SINE Alu 87 311 -1 243 0 0 0 chr1 32584623 32584650 -210079703 + (TA)n Simple_repeat Simple_repeat 1 27 0 602 256 134 0 chr1 32584657 32584895 -210079458 - L1ME4a LINE L1 -293 5828 5559 186 234 31 62 chr1 32585020 32585084 -210079269 - L2 LINE L2 -7 3265 3204 2206 68 0 89 chr1 32585515 32585840 -210078513 - AluY SINE Alu -15 296 1 1826 122 68 4 chr1 32585888 32586166 -210078187 - AluSx SINE Alu -16 296 1 598 114 16 65 chr1 32587048 32587171 -210077182 - FLAM_C SINE Alu -16 127 11 272 344 86 16 chr1 32587210 32587240 -210077113 + MIR SINE MIR 13 39 -223 2164 93 28 7 chr1 32587240 32587531 -210076822 + AluSg SINE Alu 1 297 -13 272 344 86 16 chr1 32587531 32587628 -210076725 + MIR SINE MIR 39 149 -113 2385 83 3 0 chr1 32587834 32588135 -210076218 - AluSp SINE Alu -7 306 5 1474 173 40 4 chr1 32588201 32588450 -210075903 - AluSx SINE Alu -13 299 42 907 144 0 7 chr1 32589100 32589239 -210075114 - AluSq/x SINE Alu -162 151 14 1591 154 92 11 chr1 32589669 32589941 -210074412 + AluJo SINE Alu 1 294 -18 1808 110 99 10 chr1 32589943 32590235 -210074118 + AluYb8 SINE Alu 1 318 0 1057 174 12 0 chr1 32590235 32590402 -210073951 + AluSg/x SINE Alu 130 298 -12 883 151 0 78 chr1 32590552 32590578 -210073775 - AluJb SINE Alu 0 312 286 1675 101 0 0 chr1 32590578 32590785 -210073568 - AluSx SINE Alu -105 207 1 883 151 0 78 chr1 32590785 32590937 -210073416 - AluJb SINE Alu -26 286 148 22 0 0 0 chr1 32591022 32591044 -210073309 + AT_rich Low_complexity Low_complexity 1 22 0 374 97 65 0 chr1 32591044 32591106 -210073247 + Alu SINE Alu 233 298 -4 262 96 19 19 chr1 32591671 32591723 -210072630 + (GA)n Simple_repeat Simple_repeat 2 53 0 218 191 191 0 chr1 32592144 32592212 -210072141 + MIR SINE MIR 120 200 -62 1144 163 19 83 chr1 32592887 32593151 -210071202 - AluJb SINE Alu -17 295 49 2246 94 27 3 chr1 32593377 32593675 -210070678 - AluSx SINE Alu -7 305 1 1193 160 38 9 chr1 32593675 32593887 -210070466 - AluJb SINE Alu -10 302 85 743 149 57 57 chr1 32596305 32596446 -210067907 - FLAM_C SINE Alu -1 142 2 22 0 0 0 chr1 32596449 32596471 -210067882 + AT_rich Low_complexity Low_complexity 1 22 0 346 234 194 0 chr1 32596817 32596941 -210067412 - MIR SINE MIR -48 214 67 1245 126 16 11 chr1 32597322 32597512 -210066841 - AluSg/x SINE Alu -1 309 119 2300 104 3 0 chr1 32597640 32597937 -210066416 + AluSp SINE Alu 1 298 -15 183 156 0 0 chr1 32597943 32597975 -210066378 + (CATA)n Simple_repeat Simple_repeat 2 33 0 2176 112 0 0 chr1 32598026 32598312 -210066041 + AluSx SINE Alu 1 286 -26 189 0 0 0 chr1 32598312 32598333 -210066020 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 2114 124 3 0 chr1 32598452 32598734 -210065619 + AluSx SINE Alu 1 283 -29 200 59 29 0 chr1 32598739 32598773 -210065580 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 658 151 8 17 chr1 32599024 32599143 -210065210 + FLAM_C SINE Alu 1 118 -15 2053 106 56 0 chr1 32599183 32599467 -210064886 + AluSc SINE Alu 1 300 -9 27 0 0 0 chr1 32599467 32599494 -210064859 + AT_rich Low_complexity Low_complexity 1 27 0 1549 147 113 0 chr1 32599528 32599793 -210064560 + AluJo SINE Alu 5 299 -13 423 284 37 9 chr1 32599843 32600011 -210064342 - MIR SINE MIR -66 142 8 2238 99 3 0 chr1 32600190 32600484 -210063869 + AluSg SINE Alu 3 297 -13 697 197 46 0 chr1 32601317 32601469 -210062884 + L1PB4 LINE L1 5996 6154 -2 401 309 67 6 chr1 32603946 32604124 -210060229 + MIR SINE MIR 24 212 -50 2481 54 0 3 chr1 32604164 32604462 -210059891 + AluY SINE Alu 1 297 -14 2396 65 0 7 chr1 32604672 32604964 -210059389 + AluSc SINE Alu 1 290 -19 330 296 0 0 chr1 32604986 32605074 -210059279 - L1MC4 LINE L1 -1340 6702 6615 314 281 0 42 chr1 32605015 32605111 -210059242 + L1MC4 LINE L1 6614 6705 -1337 * 1725 162 14 3 chr1 32605175 32605472 -210058881 + AluJo SINE Alu 3 302 -10 1957 134 29 10 chr1 32605502 32605808 -210058545 + AluSx SINE Alu 1 312 0 696 203 22 99 chr1 32605808 32606033 -210058320 + L1MB7 LINE L1 5932 6140 -44 864 210 47 37 chr1 32606036 32606250 -210058103 - AluJo SINE Alu -13 299 84 2034 140 0 0 chr1 32606266 32606578 -210057775 + AluSq SINE Alu 1 312 0 2169 111 0 0 chr1 32606608 32606896 -210057457 + AluSc SINE Alu 1 288 -21 2365 104 0 7 chr1 32607094 32607402 -210056951 - AluSx SINE Alu -6 306 1 249 310 159 7 chr1 32607496 32607628 -210056725 + MIR SINE MIR 64 221 -41 463 288 0 0 chr1 32607628 32607760 -210056593 + FLAM_C SINE Alu 2 133 0 249 310 159 7 chr1 32607760 32607772 -210056581 + MIR SINE MIR 221 230 -32 189 0 0 0 chr1 32607774 32607795 -210056558 + (TTA)n Simple_repeat Simple_repeat 2 22 0 266 89 222 0 chr1 32607803 32607848 -210056505 - AluJb SINE Alu -184 118 64 735 168 17 0 chr1 32607902 32608021 -210056332 - FRAM SINE Alu -18 158 38 234 197 0 33 chr1 32608091 32608152 -210056201 + MIR SINE MIR 100 158 -104 2037 115 56 0 chr1 32608356 32608643 -210055710 - AluSx SINE Alu -9 303 1 964 143 19 19 chr1 32608693 32608707 -210055646 - FRAM SINE Alu -136 40 27 2360 108 0 3 chr1 32608707 32609021 -210055332 - AluSq SINE Alu 0 313 1 964 143 19 19 chr1 32609021 32609167 -210055186 - FRAM SINE Alu -148 28 1 2376 96 3 3 chr1 32609193 32609505 -210054848 - AluSp SINE Alu -1 312 1 1497 140 0 9 chr1 32609573 32609795 -210054558 - AluSg/x SINE Alu -25 285 66 2581 60 0 0 chr1 32609795 32610093 -210054260 - AluY SINE Alu -12 299 1 2442 84 0 0 chr1 32610093 32610389 -210053964 - AluSx SINE Alu -6 306 11 1678 180 0 7 chr1 32610420 32610698 -210053655 - AluJb SINE Alu -32 280 5 2262 103 0 0 chr1 32610730 32611020 -210053333 + AluSx SINE Alu 1 290 -22 2044 82 8 0 chr1 32611146 32611401 -210052952 + AluSq SINE Alu 2 258 -55 180 0 0 0 chr1 32611403 32611423 -210052930 + (A)n Simple_repeat Simple_repeat 1 20 0 690 266 112 13 chr1 32611465 32611575 -210052778 + HAL1 LINE L1 1055 1153 -1354 1685 196 4 0 chr1 32611575 32611878 -210052475 + AluJb SINE Alu 1 304 0 690 266 112 13 chr1 32611878 32612142 -210052211 + HAL1 LINE L1 1153 1467 -1040 252 0 0 0 chr1 32612283 32612311 -210052042 + (T)n Simple_repeat Simple_repeat 1 28 0 276 165 187 137 chr1 32612617 32612799 -210051554 + MLT1K LTR MaLR 398 588 0 2392 92 0 0 chr1 32612930 32613235 -210051118 + AluSg SINE Alu 1 305 -5 1967 110 55 0 chr1 32613573 32613845 -210050508 + AluSx SINE Alu 1 287 -25 1804 171 4 0 chr1 32613874 32614199 -210050154 - AluJb SINE Alu 0 326 1 1930 121 0 26 chr1 32614223 32614496 -210049857 - AluSq SINE Alu -14 299 34 237 323 54 0 chr1 32614501 32614594 -210049759 + MIR SINE MIR 117 214 -48 320 264 90 21 chr1 32614966 32615206 -210049147 - L1MEd LINE L1 -4866 1253 1023 2221 109 3 0 chr1 32615230 32615540 -210048813 - AluSq SINE Alu 0 311 1 22 0 0 0 chr1 32615542 32615564 -210048789 + AT_rich Low_complexity Low_complexity 1 22 0 2223 102 3 0 chr1 32615650 32615957 -210048396 - AluSq SINE Alu 0 308 1 2231 106 17 0 chr1 32616748 32617050 -210047303 - AluSx SINE Alu -5 307 1 2321 99 6 10 chr1 32617076 32617388 -210046965 - AluSx SINE Alu -1 311 1 1995 159 10 0 chr1 32617467 32617769 -210046584 + AluJb SINE Alu 1 305 -7 2487 60 7 0 chr1 32617773 32618074 -210046279 + AluY SINE Alu 1 303 -8 1803 163 6 28 chr1 32618198 32618517 -210045836 + AluJo SINE Alu 1 312 0 2141 98 3 65 chr1 32618544 32618869 -210045484 - AluSg SINE Alu -5 305 1 1825 140 55 3 chr1 32619468 32619761 -210044592 - AluJo SINE Alu 0 312 5 489 283 36 0 chr1 32620145 32620311 -210044042 - L1ME2 LINE L1 0 6164 5993 1873 165 3 13 chr1 32620385 32620694 -210043659 - AluSx SINE Alu -6 306 1 2170 100 3 32 chr1 32620703 32621012 -210043341 - AluSq SINE Alu -13 300 1 423 276 57 11 chr1 32621091 32621300 -210043053 - MIR SINE MIR -42 220 3 820 203 94 10 chr1 32621433 32621625 -210042728 - MER63A DNA MER1_type -2 208 1 432 0 0 0 chr1 32622111 32622159 -210042194 + (TG)n Simple_repeat Simple_repeat 1 48 0 1614 175 0 70 chr1 32622239 32622403 -210041950 - AluJb SINE Alu -15 297 123 2114 134 0 10 chr1 32622403 32622702 -210041651 - AluSx SINE Alu -16 296 1 1614 175 0 70 chr1 32622702 32622763 -210041590 - AluJb SINE Alu -189 123 98 2341 80 0 16 chr1 32622763 32623074 -210041279 - AluSx SINE Alu -6 306 1 1614 175 0 70 chr1 32623074 32623162 -210041191 - AluJb SINE Alu -214 98 5 289 277 155 7 chr1 32623622 32623770 -210040583 - L2 LINE L2 -145 3168 2999 406 230 158 0 chr1 32623845 32623997 -210040356 - L2 LINE L2 -577 2737 2562 366 23 0 0 chr1 32624009 32624052 -210040301 + (TG)n Simple_repeat Simple_repeat 2 44 0 442 280 7 21 chr1 32624167 32624310 -210040043 - MLT1L LTR MaLR -28 587 447 2348 115 0 0 chr1 32624538 32624850 -210039503 + AluSx SINE Alu 1 312 0 226 287 76 25 chr1 32625010 32625136 -210039217 + MIR SINE MIR 20 152 -56 219 103 0 0 chr1 32625597 32625636 -210038717 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2048 90 7 41 chr1 32625638 32625928 -210038425 - AluY SINE Alu -31 280 1 1793 164 0 27 chr1 32625978 32626321 -210038032 - AluJo SINE Alu 0 312 1 2397 98 0 13 chr1 32628218 32628534 -210035819 + AluSx SINE Alu 1 312 0 2252 92 17 7 chr1 32630127 32630422 -210033931 - AluSc SINE Alu -11 298 1 2130 117 0 17 chr1 32630885 32631184 -210033169 - AluSx SINE Alu -18 294 1 3002 130 35 16 chr1 32633675 32634160 -210030193 + L1PA16 LINE L1 5657 6150 -16 1872 178 3 0 chr1 32634698 32635002 -210029351 - AluSx SINE Alu -7 305 1 1989 129 19 19 chr1 32635383 32635693 -210028660 - AluSx SINE Alu -2 310 1 2116 130 7 0 chr1 32635702 32636002 -210028351 - AluSx SINE Alu -8 304 3 220 333 45 23 chr1 32636106 32636238 -210028115 + L2 LINE L2 2595 2729 -585 1321 88 101 42 chr1 32636437 32636654 -210027699 + MER30 DNA MER1_type 1 230 0 21 36 0 0 chr1 32637669 32637697 -210026656 + AT_rich Low_complexity Low_complexity 1 28 0 1192 178 39 13 chr1 32637777 32638007 -210026346 - MER46A DNA MER2_type 0 236 1 2495 83 3 0 chr1 32638100 32638412 -210025941 + AluSp SINE Alu 1 313 0 2523 82 0 0 chr1 32638432 32638736 -210025617 + AluY SINE Alu 1 304 -7 26 50 0 0 chr1 32638991 32639031 -210025322 + AT_rich Low_complexity Low_complexity 1 40 0 677 165 50 8 chr1 32639099 32639220 -210025133 - FLAM_C SINE Alu -16 127 2 2152 97 0 4 chr1 32639268 32639547 -210024806 - AluSx SINE Alu -14 298 21 25 51 0 0 chr1 32639558 32639597 -210024756 + AT_rich Low_complexity Low_complexity 1 39 0 699 168 44 0 chr1 32639597 32639710 -210024643 - FLAM_C SINE Alu -15 118 1 1769 164 16 13 chr1 32639749 32640053 -210024300 - AluJb SINE Alu -7 305 1 198 0 0 0 chr1 32641498 32641520 -210022833 + (T)n Simple_repeat Simple_repeat 1 22 0 734 184 14 149 chr1 32642812 32642868 -210021485 - MLT1E LTR MaLR -5 580 518 360 0 0 0 chr1 32642868 32642908 -210021445 + (TG)n Simple_repeat Simple_repeat 2 41 0 1316 199 66 26 chr1 32642915 32643186 -210021167 - AluJo SINE Alu -30 282 1 734 184 14 149 chr1 32643186 32643445 -210020908 - MLT1E LTR MaLR -73 512 317 553 261 78 57 chr1 32643516 32643815 -210020538 - MLT1E LTR MaLR -263 304 1 255 47 256 0 chr1 32643950 32643993 -210020360 - MADE1 DNA Mariner -26 54 1 2088 139 0 7 chr1 32644279 32644589 -210019764 - AluSx SINE Alu -4 308 1 2013 118 0 36 chr1 32644875 32645181 -210019172 - AluY SINE Alu -16 295 1 297 0 0 0 chr1 32648248 32648281 -210016072 + (TC)n Simple_repeat Simple_repeat 2 34 0 2177 116 0 0 chr1 32650313 32650598 -210013755 - AluSq SINE Alu -28 285 1 499 246 162 7 chr1 32652060 32652202 -210012151 + MER5A DNA MER1_type 26 189 0 320 245 39 29 chr1 32652401 32652503 -210011850 - MIR SINE MIR -52 210 108 903 134 18 64 chr1 32652689 32652860 -210011493 - AluSc SINE Alu -18 291 129 2466 68 10 3 chr1 32652861 32653168 -210011185 - AluY SINE Alu -2 309 1 205 273 66 74 chr1 32653927 32654048 -210010305 + MER5B DNA MER1_type 4 123 -55 231 294 33 22 chr1 32654302 32654394 -210009959 - MIR SINE MIR -112 150 58 2576 77 0 0 chr1 32654435 32654746 -210009607 - AluSx SINE Alu 0 312 2 1664 210 3 0 chr1 32654772 32655082 -210009271 + AluJo SINE Alu 1 311 -1 238 111 28 0 chr1 32655252 32655288 -210009065 - AluJo SINE Alu -24 278 242 1300 158 8 37 chr1 32655476 32655717 -210008636 - AluJo SINE Alu -78 234 1 409 274 26 0 chr1 32655857 32655974 -210008379 - L1ME3A LINE L1 -5 6165 6046 465 217 0 0 chr1 32656203 32656295 -210008058 + AluSg/x SINE Alu 137 228 -84 204 244 0 0 chr1 32656605 32656650 -210007703 - L2 LINE L2 -254 3059 3015 2368 89 3 0 chr1 32656652 32656944 -210007409 - AluSx SINE Alu -19 293 1 584 221 175 0 chr1 32657049 32657203 -210007150 + MLT1J LTR MaLR 1 181 -330 560 241 87 34 chr1 32657279 32657486 -210006867 + MLT1J LTR MaLR 292 509 -2 213 357 0 16 chr1 32657529 32657658 -210006695 - L2 LINE L2 -571 2743 2617 1224 188 0 27 chr1 32658231 32658455 -210005898 - AluJo SINE Alu -94 218 1 341 343 6 0 chr1 32658734 32658909 -210005444 + (TG)n Simple_repeat Simple_repeat 1 176 0 222 176 0 0 chr1 32659062 32659113 -210005240 + (CA)n Simple_repeat Simple_repeat 1 51 0 2563 51 3 0 chr1 32659483 32659775 -210004578 - AluSp SINE Alu -18 295 3 432 202 0 0 chr1 32659889 32659973 -210004380 + L2 LINE L2 3230 3313 0 273 255 151 9 chr1 32659971 32660077 -210004276 - MIR SINE MIR -95 167 47 * 190 163 0 70 chr1 32660201 32660244 -210004109 + MIR SINE MIR 112 151 -111 584 265 88 10 chr1 32660599 32660803 -210003550 + MIR SINE MIR 32 251 -11 2438 77 3 7 chr1 32661450 32661748 -210002605 + AluSp SINE Alu 1 297 -16 705 280 39 0 chr1 32661971 32662178 -210002175 + MIR SINE MIR 37 251 -11 1509 135 0 0 chr1 32662186 32662394 -210001959 + AluJb SINE Alu 86 293 -19 494 287 86 29 chr1 32662523 32662623 -210001730 - MIR SINE MIR -3 259 166 1743 202 32 45 chr1 32662623 32663094 -210001259 + MLT1C LTR MaLR 1 465 -2 494 287 86 29 chr1 32663094 32663237 -210001116 - MIR SINE MIR -96 166 2 497 186 0 62 chr1 32663541 32663654 -210000699 + MIR SINE MIR 40 145 -63 586 251 45 0 chr1 32664151 32664330 -210000023 - MIR SINE MIR -34 228 42 461 289 42 0 chr1 32664327 32664469 -209999884 - MIR3 SINE MIR -20 188 41 * 252 270 38 129 chr1 32664492 32664989 -209999364 + MLT1J LTR MaLR 40 491 -20 1819 139 14 11 chr1 32665704 32665991 -209998362 - AluJb SINE Alu -24 288 1 905 172 38 13 chr1 32666319 32666476 -209997877 - FRAM SINE Alu -17 159 1 686 236 26 41 chr1 32666483 32666678 -209997675 + L1ME LINE L1 18 209 -5861 996 228 173 64 chr1 32666720 32667206 -209997147 + L1ME LINE L1 293 831 -5239 636 81 0 0 chr1 32667222 32667309 -209997044 + (TCTG)n Simple_repeat Simple_repeat 2 88 0 1850 116 60 0 chr1 32667320 32667587 -209996766 - AluSx SINE Alu -29 283 1 183 273 127 0 chr1 32667899 32667954 -209996399 - L2 LINE L2 -17 3296 3235 205 209 0 23 chr1 32669300 32669343 -209995010 + GA-rich Low_complexity Low_complexity 3 44 0 1945 152 10 7 chr1 32670728 32671030 -209993323 - AluJb SINE Alu -9 303 1 21 0 0 0 chr1 32671331 32671352 -209993001 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 32671458 32671480 -209992873 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 32673086 32673107 -209991246 + AT_rich Low_complexity Low_complexity 1 21 0 180 297 0 0 chr1 32674526 32674563 -209989790 + L2 LINE L2 3145 3181 -91 2410 97 3 0 chr1 32675219 32675529 -209988824 - AluSq SINE Alu -2 311 1 440 188 159 40 chr1 32676667 32676843 -209987510 - Charlie4 DNA MER1_type -15 1946 1750 908 203 20 10 chr1 32676865 32677067 -209987286 - Charlie4 DNA MER1_type -1711 250 47 2506 74 0 0 chr1 32677324 32677623 -209986730 + AluSg SINE Alu 1 299 -11 2150 119 0 0 chr1 32678564 32678858 -209985495 + AluSx SINE Alu 1 294 -18 2241 100 10 0 chr1 32679149 32679448 -209984905 - AluSp SINE Alu -11 302 1 778 216 32 28 chr1 32679606 32679824 -209984529 - MIR SINE MIR -38 224 6 1516 141 50 67 chr1 32680918 32681216 -209983137 + AluJo SINE Alu 3 295 -17 259 229 0 29 chr1 32681321 32681391 -209982962 + L2 LINE L2 3246 3313 0 224 30 30 0 chr1 32681868 32681901 -209982452 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 496 234 8 8 chr1 32682442 32682566 -209981787 + L2 LINE L2 3190 3313 0 303 132 29 59 chr1 32683067 32683135 -209981218 + L1MC4 LINE L1 6614 6679 -1363 1091 120 18 6 chr1 32683237 32683404 -209980949 - AluSx SINE Alu -106 206 38 193 319 62 18 chr1 32683665 32683778 -209980575 + L2 LINE L2 2234 2351 -963 195 197 61 61 chr1 32684142 32684208 -209980145 + MER5B DNA MER1_type 111 176 -2 1468 205 13 28 chr1 32684511 32684828 -209979525 - AluJo SINE Alu 0 312 1 241 240 207 77 chr1 32685253 32685375 -209978978 - MIR SINE MIR -4 258 153 2088 134 0 13 chr1 32685375 32685682 -209978671 - AluSx SINE Alu -9 303 1 241 240 207 77 chr1 32685682 32685767 -209978586 - MIR SINE MIR -109 153 24 1305 155 140 63 chr1 32686322 32686657 -209977696 + MER46B DNA MER2_type 1 236 0 217 116 0 23 chr1 32686657 32686694 -209977659 - MIR SINE MIR -114 148 113 1954 105 3 25 chr1 32687538 32687823 -209976530 - AluSq SINE Alu -12 301 23 1533 167 35 42 chr1 32687990 32688301 -209976052 + AluJb SINE Alu 1 309 -3 2328 92 3 0 chr1 32689543 32689836 -209974517 - AluSg SINE Alu -16 294 1 22 0 0 0 chr1 32690371 32690393 -209973960 + AT_rich Low_complexity Low_complexity 1 22 0 2185 90 17 14 chr1 32690556 32690846 -209973507 - AluSq SINE Alu -22 291 1 3509 143 35 19 chr1 32690878 32691471 -209972882 - LTR26 LTR ERV1 0 603 1 1551 171 7 14 chr1 32691726 32692001 -209972352 - AluJo SINE Alu -23 289 17 285 278 40 46 chr1 32692009 32692160 -209972193 - LTR49-int LTR ERV1 -604 6933 6784 1055 142 0 25 chr1 32692202 32692364 -209971989 + AluJb SINE Alu 133 290 -22 2350 90 0 10 chr1 32692410 32692709 -209971644 - AluSx SINE Alu -12 300 5 446 178 26 125 chr1 32692831 32692983 -209971370 - LTR49-int LTR ERV1 -188 4748 4612 324 336 31 23 chr1 32693010 32693138 -209971215 - LTR49-int LTR ERV1 -432 5899 5771 1864 159 3 0 chr1 32693264 32693560 -209970793 - AluSx SINE Alu -14 298 2 1536 192 14 11 chr1 32695571 32695852 -209968501 + AluJb SINE Alu 1 282 -30 436 252 126 35 chr1 32696142 32696192 -209968161 + L2 LINE L2 3049 3093 -220 2230 103 3 28 chr1 32696192 32696513 -209967840 - AluSq SINE Alu 0 313 1 436 252 126 35 chr1 32696513 32696692 -209967661 + L2 LINE L2 3093 3299 -14 26 0 0 0 chr1 32698813 32698839 -209965514 + AT_rich Low_complexity Low_complexity 1 26 0 183 100 0 0 chr1 32699345 32699375 -209964978 + (CCCCAG)n Simple_repeat Simple_repeat 4 33 0 498 184 53 0 chr1 32699838 32699952 -209964401 - L1ME LINE L1 -5101 969 850 529 122 0 0 chr1 32699980 32700054 -209964299 + AluS SINE Alu 2 75 -235 1156 101 7 0 chr1 32700054 32700203 -209964150 - AluSg/x SINE Alu -27 283 134 1787 183 33 0 chr1 32702213 32702513 -209961840 - AluJb SINE Alu -2 310 1 1728 134 108 14 chr1 32702843 32703120 -209961233 + AluJb SINE Alu 1 303 -9 310 311 66 16 chr1 32703601 32703723 -209960630 + MIR SINE MIR 2 129 -133 316 344 149 18 chr1 32703785 32704006 -209960347 + MIR SINE MIR 11 260 -2 818 183 28 0 chr1 32704076 32704218 -209960135 - FRAM SINE Alu -19 157 12 35 54 0 14 chr1 32704288 32704339 -209960014 + AT_rich Low_complexity Low_complexity 1 52 -21 2389 91 0 0 chr1 32704339 32704635 -209959718 - AluSg SINE Alu -14 296 1 35 54 0 14 chr1 32704635 32704657 -209959696 + AT_rich Low_complexity Low_complexity 52 73 0 636 220 55 11 chr1 32704657 32704839 -209959514 + Tigger5 DNA MER2_type 2133 2322 -1 376 258 122 87 chr1 32704851 32705198 -209959155 - L1M4 LINE L1 -2803 3343 2908 2283 95 0 7 chr1 32705324 32705660 -209958693 + AluSg SINE Alu 1 310 0 2192 86 10 20 chr1 32705682 32705983 -209958370 + AluY SINE Alu 1 298 -13 201 39 0 0 chr1 32705998 32706024 -209958329 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 407 313 23 0 chr1 32706133 32706261 -209958092 - L2 LINE L2 -1 3271 3141 1675 154 11 0 chr1 32706317 32706583 -209957770 + AluSp SINE Alu 1 269 -44 1933 167 0 0 chr1 32706584 32706866 -209957487 - AluSx SINE Alu -30 282 1 3090 125 14 82 chr1 32706887 32707183 -209957170 - LTR26B LTR ERV1 0 531 216 2414 102 3 0 chr1 32707183 32707488 -209956865 - AluSp SINE Alu -7 306 1 3090 125 14 82 chr1 32707488 32707550 -209956803 - LTR26B LTR ERV1 -315 216 151 2520 67 0 0 chr1 32707550 32707850 -209956503 - AluY SINE Alu -11 300 1 2241 105 0 40 chr1 32707856 32708180 -209956173 - AluSq SINE Alu -2 311 1 3090 125 14 82 chr1 32708180 32708383 -209955970 - LTR26B LTR ERV1 -385 146 1 2013 135 7 3 chr1 32708489 32708795 -209955558 + AluSx SINE Alu 1 307 0 1278 171 110 20 chr1 32708799 32708937 -209955416 + AluJo SINE Alu 1 125 -187 2234 90 4 0 chr1 32708937 32709214 -209955139 + AluSp SINE Alu 3 280 -33 1278 171 110 20 chr1 32709214 32709320 -209955033 + AluJo SINE Alu 125 267 -45 315 0 0 0 chr1 32709328 32709363 -209954990 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 196 352 167 19 chr1 32709409 32709517 -209954836 - L2 LINE L2 -204 3068 2945 1234 139 0 0 chr1 32709519 32709692 -209954661 + AluSg/x SINE Alu 137 309 -3 2433 100 3 0 chr1 32709703 32710012 -209954341 + AluSp SINE Alu 1 310 -3 436 314 79 56 chr1 32710018 32710204 -209954149 - L2 LINE L2 -371 2943 2763 2632 123 32 21 chr1 32710204 32710359 -209953994 - LTR23 LTR ERV1 0 437 285 1968 155 0 25 chr1 32710359 32710494 -209953859 + AluSx SINE Alu 1 138 -174 2403 89 0 3 chr1 32710494 32710796 -209953557 + AluSg SINE Alu 1 301 -9 2313 101 0 0 chr1 32710800 32711106 -209953247 + AluSg SINE Alu 1 310 0 1968 155 0 25 chr1 32711106 32711282 -209953071 + AluSx SINE Alu 141 309 -3 2632 123 32 21 chr1 32711282 32711557 -209952796 - LTR23 LTR ERV1 -152 285 2 436 314 79 56 chr1 32711557 32711622 -209952731 - L2 LINE L2 -551 2763 2686 335 299 58 82 chr1 32711632 32711923 -209952430 + L1ME4a LINE L1 5835 6118 -3 2353 115 0 6 chr1 32711993 32712306 -209952047 - AluSq SINE Alu -2 311 1 533 225 21 0 chr1 32712309 32712451 -209951902 - LTR16A1 LTR ERVL -6 451 307 2066 94 8 0 chr1 32712814 32713079 -209951274 + AluSg SINE Alu 35 301 -9 249 122 0 0 chr1 32713080 32713121 -209951232 - MER41A LTR ERV1 -131 423 383 2186 107 0 10 chr1 32713164 32713455 -209950898 + AluSc SINE Alu 1 288 -21 2387 82 7 0 chr1 32713528 32713831 -209950522 + AluSp SINE Alu 1 305 -8 1749 191 6 28 chr1 32713840 32714159 -209950194 + AluJb SINE Alu 1 312 0 719 300 50 3 chr1 32714209 32714506 -209949847 - L1MC4a LINE L1 -1893 5915 5605 2268 112 0 0 chr1 32714513 32714808 -209949545 - AluSx SINE Alu -17 295 1 2424 91 0 0 chr1 32715040 32715336 -209949017 - AluSq SINE Alu -17 296 1 38 0 0 0 chr1 32715355 32715393 -209948960 + AT_rich Low_complexity Low_complexity 1 38 0 678 214 0 0 chr1 32715393 32715510 -209948843 - FLAM_C SINE Alu -15 118 2 2358 107 3 0 chr1 32715617 32715927 -209948426 + AluSp SINE Alu 1 311 -2 2279 100 0 0 chr1 32715927 32716217 -209948136 + AluSg1 SINE Alu 1 290 -19 691 165 0 0 chr1 32716359 32716468 -209947885 - FRAM SINE Alu -22 154 46 2145 112 7 0 chr1 32716621 32716915 -209947438 - AluSq SINE Alu -15 298 3 1320 220 62 22 chr1 32717045 32717318 -209947035 + AluJo SINE Alu 7 290 -22 290 271 21 125 chr1 32717321 32717380 -209946973 + L2 LINE L2 2710 2774 -540 1999 101 0 82 chr1 32717380 32717708 -209946645 + AluSx SINE Alu 1 301 -11 290 271 21 125 chr1 32717708 32717777 -209946576 + L2 LINE L2 2774 2849 -465 1619 122 0 0 chr1 32717777 32717999 -209946354 + AluSg/x SINE Alu 73 294 -18 290 271 21 125 chr1 32717999 32718109 -209946244 + L2 LINE L2 2849 2924 -390 712 246 188 4 chr1 32718177 32718433 -209945920 - MLT1K LTR MaLR -279 309 7 2304 111 0 0 chr1 32718551 32718849 -209945504 - AluSc SINE Alu -11 298 1 376 246 101 22 chr1 32718969 32719107 -209945246 - L2 LINE L2 -3 3310 3162 561 206 30 0 chr1 32719224 32719355 -209944998 + L1ME LINE L1 5423 5557 -607 984 88 19 62 chr1 32719379 32719539 -209944814 + AluJb SINE Alu 160 312 0 2439 96 0 3 chr1 32719609 32719922 -209944431 - AluSx SINE Alu 0 312 1 345 310 47 16 chr1 32720252 32720381 -209943972 - MIR SINE MIR -73 189 57 189 0 0 0 chr1 32720647 32720668 -209943685 + (CGGGGG)n Simple_repeat Simple_repeat 3 23 0 241 203 0 43 chr1 32720818 32720887 -209943466 + G-rich Low_complexity Low_complexity 1 66 0 333 269 43 11 chr1 32721002 32721095 -209943258 - L1MC4 LINE L1 -1339 6703 6608 308 169 182 26 chr1 32721071 32721148 -209943205 + L1MC4 LINE L1 6615 6703 -1339 * 232 180 49 0 chr1 32721149 32721210 -209943143 + (TA)n Simple_repeat Simple_repeat 2 65 0 375 248 88 16 chr1 32721210 32721335 -209943018 + L2 LINE L2 2532 2665 -649 312 235 44 59 chr1 32721349 32721444 -209942909 + L1MCa LINE L1 1931 2025 -4401 2233 104 3 0 chr1 32721444 32721731 -209942622 - AluSx SINE Alu -24 288 1 312 235 44 59 chr1 32721731 32721771 -209942582 + L1MCa LINE L1 2025 2064 -4362 211 93 47 0 chr1 32721776 32721819 -209942534 + (TA)n Simple_repeat Simple_repeat 2 46 0 1971 125 36 11 chr1 32721819 32722100 -209942253 - AluSx SINE Alu -24 288 1 311 235 41 41 chr1 32722104 32722202 -209942151 + L1MC4 LINE L1 6608 6705 -1337 309 206 41 72 chr1 32722140 32722237 -209942116 - L1MC4 LINE L1 -1337 6705 6612 * 649 202 0 0 chr1 32722257 32722361 -209941992 - FLAM_A SINE Alu -38 104 1 930 256 67 71 chr1 32722364 32722814 -209941539 - L2 LINE L2 -774 2540 2093 1436 158 108 4 chr1 32722814 32723054 -209941299 + AluJo SINE Alu 9 273 -39 625 137 0 24 chr1 32723063 32723187 -209941166 + (GAAA)n Simple_repeat Simple_repeat 1 121 0 2351 101 3 0 chr1 32723188 32723495 -209940858 + AluSg SINE Alu 3 310 0 1498 192 11 11 chr1 32723508 32723794 -209940559 + AluJo SINE Alu 1 286 -26 2111 107 0 48 chr1 32723810 32724120 -209940233 + AluSx SINE Alu 5 299 -13 2300 106 3 3 chr1 32724122 32724433 -209939920 + AluSq SINE Alu 1 311 -2 351 65 0 0 chr1 32724471 32724517 -209939836 + (TCC)n Simple_repeat Simple_repeat 3 48 0 471 254 104 36 chr1 32724598 32724877 -209939476 - HAL1 LINE L1 -1357 1150 853 1628 170 40 53 chr1 32724905 32725110 -209939243 - AluJo SINE Alu -16 296 90 189 0 0 0 chr1 32725110 32725131 -209939222 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2173 117 0 0 chr1 32725131 32725413 -209938940 - AluSx SINE Alu -30 282 1 1628 170 40 53 chr1 32725413 32725506 -209938847 - AluJo SINE Alu -220 92 1 2601 52 0 3 chr1 32725513 32725819 -209938534 - AluY SINE Alu -6 305 1 1077 104 0 0 chr1 32725819 32725954 -209938399 - AluSq/x SINE Alu -178 135 1 800 103 0 0 chr1 32726017 32726124 -209938229 + AluSg/x SINE Alu 205 311 -1 2085 109 0 38 chr1 32726644 32726957 -209937396 + AluSx SINE Alu 1 301 -11 1444 159 3 109 chr1 32727018 32727359 -209936994 - AluJb SINE Alu 0 312 1 242 253 274 0 chr1 32727448 32727543 -209936810 - MIR SINE MIR -14 248 128 413 289 112 56 chr1 32727554 32727609 -209936744 + L2 LINE L2 2684 2734 -580 2000 131 3 77 chr1 32727609 32727946 -209936407 - AluSx SINE Alu 0 312 1 413 289 112 56 chr1 32727946 32728139 -209936214 + L2 LINE L2 2734 2946 -368 335 118 0 0 chr1 32728363 32728414 -209935939 - 5S rRNA rRNA -70 51 1 579 239 42 7 chr1 32728518 32728660 -209935693 + MER58A DNA MER1_type 2 148 0 2213 105 0 23 chr1 32728661 32728967 -209935386 + AluSx SINE Alu 1 299 -13 1883 166 0 0 chr1 32728981 32729259 -209935094 + AluJb SINE Alu 3 280 -32 222 62 0 0 chr1 32729259 32729291 -209935062 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 917 176 0 21 chr1 32729294 32729482 -209934871 + L1MB8 LINE L1 5556 5739 -445 2315 90 3 10 chr1 32729482 32729781 -209934572 + AluSp SINE Alu 1 297 -16 576 168 26 0 chr1 32729793 32729906 -209934447 + L1MB8 LINE L1 6063 6178 0 298 114 29 29 chr1 32729938 32730008 -209934345 + GA-rich Low_complexity Low_complexity 5 74 0 1979 110 29 0 chr1 32730031 32730303 -209934050 - AluSx SINE Alu -7 305 26 2181 79 24 3 chr1 32731281 32731571 -209932782 + AluY SINE Alu 1 296 -15 1170 134 41 0 chr1 32731655 32731827 -209932526 + AluSg/x SINE Alu 125 303 -9 769 139 33 0 chr1 32731852 32731974 -209932379 + AluSg/x SINE Alu 169 294 -18 2290 108 16 0 chr1 32732118 32732474 -209931879 - AluSq SINE Alu 0 361 1 2351 106 3 3 chr1 32732474 32732786 -209931567 - AluSq SINE Alu -1 312 1 865 203 0 0 chr1 32732882 32733035 -209931318 + FRAM SINE Alu 23 175 -1 1930 185 0 0 chr1 32733086 32733389 -209930964 - AluJb SINE Alu -8 304 2 2260 112 0 7 chr1 32733615 32733918 -209930435 + AluSq SINE Alu 1 301 -12 957 135 0 0 chr1 32733946 32734079 -209930274 + AluSq/x SINE Alu 1 133 -179 2115 139 7 0 chr1 32734100 32734410 -209929943 + AluSx SINE Alu 1 312 0 2170 116 30 0 chr1 32734495 32734797 -209929556 - AluSx SINE Alu -1 311 1 2439 95 0 0 chr1 32734927 32735233 -209929120 - AluSg SINE Alu -4 306 1 848 185 0 0 chr1 32735333 32735479 -209928874 + FRAM SINE Alu 23 168 -8 328 267 44 0 chr1 32735527 32735617 -209928736 - MIR SINE MIR -14 248 155 565 309 34 39 chr1 32735644 32735720 -209928633 + MIR SINE MIR 23 98 -164 1799 125 16 43 chr1 32735720 32736024 -209928329 - AluJo SINE Alu -16 296 1 565 309 34 39 chr1 32736024 32736154 -209928199 + MIR SINE MIR 98 228 -34 396 0 0 0 chr1 32736716 32736760 -209927593 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1907 112 39 0 chr1 32736765 32737025 -209927328 - AluSg SINE Alu -9 301 32 2176 71 54 0 chr1 32737027 32737307 -209927046 - AluSp SINE Alu -18 295 1 2104 109 0 56 chr1 32737350 32737671 -209926682 - AluSx SINE Alu -9 303 1 1671 113 4 4 chr1 32737833 32738071 -209926282 - AluSx SINE Alu -17 295 58 1891 120 11 33 chr1 32738422 32738546 -209925807 + AluSx SINE Alu 13 138 -174 2283 92 17 0 chr1 32738546 32738841 -209925512 + AluSc SINE Alu 1 300 -9 1999 108 52 3 chr1 32738841 32739127 -209925226 + AluSx SINE Alu 1 300 -12 1891 120 11 33 chr1 32739127 32739275 -209925078 + AluSx SINE Alu 136 280 -32 216 0 0 0 chr1 32739277 32739301 -209925052 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1547 162 0 16 chr1 32739303 32739550 -209924803 + AluJo SINE Alu 1 243 -69 26 0 0 0 chr1 32739567 32739593 -209924760 + AT_rich Low_complexity Low_complexity 1 26 0 1648 181 0 7 chr1 32739618 32739924 -209924429 + AluJb SINE Alu 29 312 0 519 177 35 26 chr1 32741067 32741180 -209923173 - AluJ SINE Alu -1 311 198 2268 188 30 13 chr1 32741182 32741697 -209922656 + LTR27 LTR ERV1 2 490 -11 904 139 134 70 chr1 32741706 32741893 -209922460 - AluJ SINE Alu -113 199 1 210 289 24 0 chr1 32741893 32741976 -209922377 + MIR SINE MIR 122 206 -56 207 0 0 0 chr1 32741983 32742006 -209922347 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1754 153 4 8 chr1 32742008 32742269 -209922084 - AluSx SINE Alu -32 280 21 886 129 30 8 chr1 32742269 32742401 -209921952 - AluJo SINE Alu -176 136 2 25 37 0 37 chr1 32742677 32742700 -209921653 + AT_rich Low_complexity Low_complexity 1 23 -29 2591 60 0 0 chr1 32742700 32742999 -209921354 + AluY SINE Alu 1 299 -12 1514 140 0 9 chr1 32742999 32743220 -209921133 + AluSg/x SINE Alu 66 285 -25 25 37 0 37 chr1 32743220 32743249 -209921104 + AT_rich Low_complexity Low_complexity 21 52 0 2401 96 3 3 chr1 32743288 32743600 -209920753 + AluSp SINE Alu 1 312 -1 962 151 20 0 chr1 32743626 32743772 -209920581 + FRAM SINE Alu 16 164 -12 1979 150 0 10 chr1 32743772 32744078 -209920275 + AluSx SINE Alu 1 303 -9 1178 266 90 26 chr1 32744099 32744594 -209919759 + L2 LINE L2 2795 3301 -12 1982 147 10 0 chr1 32744596 32744888 -209919465 + AluSx SINE Alu 1 295 -17 27 49 0 0 chr1 32744889 32744930 -209919423 + AT_rich Low_complexity Low_complexity 1 41 0 278 218 0 18 chr1 32745036 32745091 -209919262 - MLT1K LTR MaLR -343 245 192 900 221 0 0 chr1 32745206 32745369 -209918984 - FRAM SINE Alu -3 163 1 2228 99 24 0 chr1 32745401 32745694 -209918659 + AluSx SINE Alu 1 300 -12 1322 105 0 0 chr1 32745694 32745866 -209918487 + AluSg/x SINE Alu 134 305 -7 2283 115 0 0 chr1 32746076 32746372 -209917981 - AluSx SINE Alu -16 296 1 678 227 0 40 chr1 32746583 32746620 -209917733 + FAM SINE Alu 21 58 -263 2528 208 92 63 chr1 32746620 32747145 -209917208 + LTR1B LTR ERV1 1 558 -268 1919 176 0 3 chr1 32747145 32747447 -209916906 + AluSx SINE Alu 1 301 -11 2528 208 92 63 chr1 32747447 32747724 -209916629 + LTR1B LTR ERV1 558 826 0 678 227 0 40 chr1 32747724 32747836 -209916517 + FAM SINE Alu 58 164 -21 2295 115 6 6 chr1 32747845 32748158 -209916195 + AluSq SINE Alu 1 313 0 601 171 103 0 chr1 32748178 32748295 -209916058 + AluJb SINE Alu 6 134 -178 1985 153 0 23 chr1 32748296 32748647 -209915706 + AluSx SINE Alu 1 312 0 993 153 0 31 chr1 32748656 32748801 -209915552 - AluJo SINE Alu -21 291 150 3715 92 16 54 chr1 32748801 32748903 -209915450 - MER41A LTR ERV1 0 554 450 2037 119 3 3 chr1 32748903 32749236 -209915117 - AluY SINE Alu 0 333 1 3715 92 16 54 chr1 32749236 32749708 -209914645 - MER41A LTR ERV1 -104 450 1 993 153 0 31 chr1 32749708 32749725 -209914628 - AluJo SINE Alu -162 150 134 853 174 8 0 chr1 32749725 32749857 -209914496 - AluJo SINE Alu -169 133 1 1988 114 18 0 chr1 32749861 32750141 -209914212 - AluSp SINE Alu -23 290 6 1000 154 89 117 chr1 32750944 32751269 -209913084 + LTR54 LTR ERV1 2 317 -193 2097 133 0 13 chr1 32751282 32751584 -209912769 - AluSx SINE Alu -16 296 1 918 138 0 83 chr1 32751584 32751765 -209912588 - AluJo/FRAM SINE Alu -10 302 137 1823 106 103 7 chr1 32751765 32752047 -209912306 - AluSx SINE Alu -3 309 1 1942 114 7 23 chr1 32752047 32752346 -209912007 - AluSx SINE Alu -18 294 1 413 101 0 58 chr1 32752367 32752384 -209911969 - AluSq/x SINE Alu -152 150 134 2258 90 3 0 chr1 32752384 32752684 -209911669 - AluY SINE Alu -10 301 1 413 101 0 58 chr1 32752684 32752735 -209911618 - AluSq/x SINE Alu -168 134 86 773 230 112 0 chr1 32752735 32752922 -209911431 - AluJo SINE Alu -92 220 13 932 175 6 0 chr1 32752933 32753116 -209911237 + LTR54 LTR ERV1 321 504 -6 805 73 91 0 chr1 32753117 32753227 -209911126 + AluSq/x SINE Alu 2 121 -192 2125 93 0 10 chr1 32753348 32753639 -209910714 + AluSg SINE Alu 1 288 -22 226 157 0 59 chr1 32753801 32753852 -209910501 - LTR67 LTR ERVL 0 557 510 839 124 51 56 chr1 32753869 32754047 -209910306 + AluJo SINE Alu 22 198 -114 2160 79 7 0 chr1 32754091 32754397 -209909956 - AluY SINE Alu 0 308 1 1751 173 0 37 chr1 32754533 32754856 -209909497 + AluJo SINE Alu 1 311 -1 235 276 63 55 chr1 32755517 32755644 -209908709 - MIR SINE MIR -102 160 33 496 82 137 0 chr1 32755750 32755823 -209908530 - AluSc SINE Alu -11 298 216 276 122 0 0 chr1 32755823 32755872 -209908481 + Alu SINE Alu 252 300 -2 449 276 112 12 chr1 32755917 32756087 -209908266 - MIR SINE MIR -56 206 20 236 62 0 0 chr1 32756298 32756330 -209908023 + Alu SINE Alu 112 143 -159 1498 176 0 91 chr1 32756330 32756659 -209907694 + AluJb SINE Alu 1 299 -13 2101 110 0 7 chr1 32756661 32756952 -209907401 + AluSg SINE Alu 3 291 -19 2257 93 3 0 chr1 32756954 32757255 -209907098 + AluSq SINE Alu 3 304 -9 423 0 0 0 chr1 32757524 32757571 -209906782 + (TG)n Simple_repeat Simple_repeat 2 48 0 1371 186 54 14 chr1 32757571 32757840 -209906513 - AluJb SINE Alu -12 300 18 262 140 2 0 chr1 32757852 32757903 -209906450 + MIR SINE MIR 100 152 -56 2145 125 3 0 chr1 32758153 32758464 -209905889 + AluSx SINE Alu 1 312 0 308 167 10 39 chr1 32758468 32758517 -209905836 + GA-rich Low_complexity Low_complexity 2 51 -49 2272 85 20 0 chr1 32758517 32758822 -209905531 + AluSx SINE Alu 1 311 -1 308 167 10 39 chr1 32758822 32758874 -209905479 + GA-rich Low_complexity Low_complexity 51 100 0 403 338 108 5 chr1 32759601 32759805 -209904548 + MIR SINE MIR 17 241 -21 256 256 39 26 chr1 32760129 32760207 -209904146 + MIR SINE MIR 15 93 -169 196 306 126 22 chr1 32761335 32761518 -209902835 + L2 LINE L2 2853 3054 -218 237 234 0 0 chr1 32761599 32761663 -209902690 + (CA)n Simple_repeat Simple_repeat 1 64 0 184 188 21 21 chr1 32761665 32761713 -209902640 + L2 LINE L2 3189 3236 -77 4750 160 22 23 chr1 32761728 32762132 -209902221 - L1MB7 LINE L1 -13 6171 5768 1924 152 3 10 chr1 32762132 32762144 -209902209 - AluJb SINE Alu -1 311 300 270 0 0 0 chr1 32762144 32762174 -209902179 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1924 152 3 10 chr1 32762174 32762470 -209901883 - AluJb SINE Alu -12 300 5 4750 160 22 23 chr1 32762470 32763051 -209901302 - L1MB7 LINE L1 -416 5768 5188 2140 109 10 10 chr1 32763157 32763468 -209900885 - AluY SINE Alu 0 311 1 997 200 0 0 chr1 32763482 32763662 -209900691 + AluJb SINE Alu 1 180 -132 466 104 0 0 chr1 32763763 32763830 -209900523 + Alu SINE Alu 240 306 -6 5129 185 31 34 chr1 32763833 32764257 -209900096 - L1MB7 LINE L1 -1062 5084 4660 1962 109 29 4 chr1 32764257 32764562 -209899791 - AluSx SINE Alu 0 312 1 5129 185 31 34 chr1 32764562 32765330 -209899023 - L1MB7 LINE L1 -1486 4660 3895 192 225 56 56 chr1 32765516 32765587 -209898766 - MIR SINE MIR -97 165 95 532 57 0 91 chr1 32765589 32765640 -209898713 - MADE1 DNA Mariner 0 80 39 2234 93 7 0 chr1 32765640 32765940 -209898413 + AluSx SINE Alu 1 302 -10 532 57 0 91 chr1 32765940 32765976 -209898377 - MADE1 DNA Mariner -41 39 1 1119 153 0 0 chr1 32766215 32766391 -209897962 - AluJo/FRAM SINE Alu -3 309 134 1779 177 10 3 chr1 32766392 32766692 -209897661 - AluJb SINE Alu -10 302 1 2059 109 0 0 chr1 32766824 32767131 -209897222 - AluSq SINE Alu 0 313 6 312 262 21 71 chr1 32767246 32767387 -209896966 - MIR SINE MIR -66 196 63 543 250 157 0 chr1 32767924 32768096 -209896257 - MIR SINE MIR -12 250 52 400 277 45 0 chr1 32768255 32768367 -209895986 + MIR SINE MIR 26 142 -120 833 220 8 106 chr1 32768819 32769074 -209895279 - MIR SINE MIR -29 233 4 1714 166 0 3 chr1 32769207 32769490 -209894863 + AluJb SINE Alu 14 295 -17 1798 182 0 3 chr1 32769492 32769805 -209894548 + AluJb SINE Alu 1 312 0 26 0 0 0 chr1 32769805 32769831 -209894522 + AT_rich Low_complexity Low_complexity 1 26 0 202 0 59 29 chr1 32769957 32769991 -209894362 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1533 151 0 0 chr1 32770121 32770376 -209893977 + AluSg SINE Alu 52 306 0 1071 114 57 0 chr1 32770376 32770534 -209893819 + AluSq SINE Alu 131 297 -16 521 293 146 5 chr1 32770555 32770767 -209893586 - MIR SINE MIR -13 249 8 481 278 9 0 chr1 32771574 32771682 -209892671 - MER81 DNA DNA -4 110 2 2165 112 0 0 chr1 32771791 32772087 -209892266 + AluSx SINE Alu 1 296 -16 2076 96 30 0 chr1 32772382 32772683 -209891670 - AluSx SINE Alu -2 310 1 2338 88 0 0 chr1 32772683 32772978 -209891375 - AluSc SINE Alu -14 295 1 2206 86 3 13 chr1 32772981 32773283 -209891070 - AluY SINE Alu -12 299 1 319 225 109 4 chr1 32773893 32774014 -209890339 + MIR3 SINE MIR 12 156 -52 2312 63 0 10 chr1 32774014 32774314 -209890039 + AluY SINE Alu 1 297 -14 209 339 0 0 chr1 32774491 32774550 -209889803 + L2 LINE L2 3153 3211 -61 380 88 0 10 chr1 32774553 32774623 -209889730 - AluSg SINE Alu -219 81 29 1480 89 20 0 chr1 32774628 32774830 -209889523 + AluSg/x SINE Alu 85 290 -19 1818 145 7 16 chr1 32774912 32775222 -209889131 + AluJb SINE Alu 1 307 -5 585 198 0 0 chr1 32775558 32775684 -209888669 + (TG)n Simple_repeat Simple_repeat 2 127 0 333 259 152 0 chr1 32775785 32775897 -209888456 + L2 LINE L2 3181 3309 -4 328 234 32 0 chr1 32776061 32776155 -209888198 + MIR3 SINE MIR 90 186 -22 507 194 31 0 chr1 32776363 32776461 -209887892 - MIR SINE MIR -65 143 43 456 348 6 6 chr1 32777496 32777657 -209886696 - L2 LINE L2 -24 3289 3129 969 140 30 6 chr1 32777663 32777827 -209886526 + FRAM SINE Alu 6 173 -3 2192 114 0 0 chr1 32777830 32778129 -209886224 + AluSx SINE Alu 3 301 -11 1059 76 0 0 chr1 32778129 32778260 -209886093 + AluSg SINE Alu 1 131 -179 2436 77 0 0 chr1 32778264 32778575 -209885778 + AluY SINE Alu 1 311 0 838 176 0 0 chr1 32778615 32778746 -209885607 - FLAM_C SINE Alu 0 133 3 1861 134 0 10 chr1 32778778 32779076 -209885277 + AluSx SINE Alu 1 295 -17 297 250 57 73 chr1 32779173 32779297 -209885056 + L2 LINE L2 3183 3304 -9 1633 195 3 0 chr1 32779556 32779863 -209884490 + AluJo SINE Alu 1 308 -4 374 265 143 31 chr1 32779998 32780200 -209884153 - MIR SINE MIR -14 248 29 189 0 0 0 chr1 32780210 32780231 -209884122 + (A)n Simple_repeat Simple_repeat 1 21 0 2134 121 0 0 chr1 32780325 32780623 -209883730 - AluSx SINE Alu -14 298 1 485 316 19 0 chr1 32780915 32781073 -209883280 - MIR3 SINE MIR -13 195 35 353 164 27 0 chr1 32781136 32781209 -209883144 + MIR SINE MIR 67 141 -67 197 372 0 0 chr1 32781688 32781766 -209882587 + MIR SINE MIR 58 135 -73 754 208 84 25 chr1 32782045 32782216 -209882137 + MIR SINE MIR 44 230 -32 1865 148 3 26 chr1 32782216 32782526 -209881827 - AluJo SINE Alu -9 303 1 754 208 84 25 chr1 32782526 32782556 -209881797 + MIR SINE MIR 230 257 -5 1775 241 151 24 chr1 32782671 32783248 -209881105 + MER21B LTR ERV1 102 751 -112 298 203 165 0 chr1 32784130 32784209 -209880144 + MIR SINE MIR 171 262 0 2061 135 0 0 chr1 32784539 32784843 -209879510 + AluJb SINE Alu 2 305 -7 2145 99 3 7 chr1 32784984 32785286 -209879067 - AluSq SINE Alu -12 301 1 789 156 39 84 chr1 32785325 32785371 -209878982 + MER45A DNA AcHobo 8 55 -1526 2003 138 3 13 chr1 32785371 32785546 -209878807 - AluSx SINE Alu -4 308 136 1982 125 20 3 chr1 32785546 32785849 -209878504 - AluSc SINE Alu -1 308 1 2003 138 3 13 chr1 32785849 32785984 -209878369 - AluSx SINE Alu -176 136 1 789 156 39 84 chr1 32785984 32786038 -209878315 + MER45A DNA AcHobo 55 110 -1471 1810 125 24 20 chr1 32786038 32786335 -209878018 - AluSp SINE Alu -15 298 1 789 156 39 84 chr1 32786335 32786412 -209877941 + MER45A DNA AcHobo 110 178 0 228 321 0 36 chr1 32786455 32786539 -209877814 - MIR SINE MIR -179 83 3 1683 137 8 0 chr1 32786750 32787006 -209877347 - AluSq SINE Alu -6 307 50 342 178 11 11 chr1 32787046 32787123 -209877230 - Alu SINE Alu -253 50 6 492 211 78 28 chr1 32787145 32787287 -209877066 + L2 LINE L2 3156 3304 -9 656 264 53 19 chr1 32787868 32788076 -209876277 - MIR SINE MIR -35 227 13 277 224 0 51 chr1 32788079 32788177 -209876176 + C-rich Low_complexity Low_complexity 4 96 0 31 44 0 0 chr1 32788458 32788503 -209875850 + GC_rich Low_complexity Low_complexity 1 45 0 993 273 81 61 chr1 32789356 32789766 -209874587 - MLT1K LTR MaLR -100 488 71 2024 133 0 16 chr1 32789774 32790090 -209874263 + AluSx SINE Alu 1 311 -1 620 212 180 37 chr1 32790092 32790309 -209874044 - MLT1H LTR MaLR -57 492 245 1473 121 5 5 chr1 32790352 32790576 -209873777 - AluSg/x SINE Alu -4 308 85 650 247 70 0 chr1 32791580 32791766 -209872587 - MIR SINE MIR -12 250 52 404 139 0 0 chr1 32792931 32793003 -209871350 + Alu SINE Alu 241 312 0 2286 91 3 0 chr1 32793013 32793310 -209871043 - AluSp SINE Alu -15 298 1 868 173 0 0 chr1 32793312 32793445 -209870908 - AluJo/FLAM SINE Alu -169 133 1 269 269 0 0 chr1 32793481 32793548 -209870805 - L2 LINE L2 -49 3223 3157 345 291 39 8 chr1 32793559 32793686 -209870667 - MER5A DNA MER1_type -3 186 56 259 291 55 39 chr1 32793582 32793709 -209870644 + MER5B DNA MER1_type 27 155 -23 * 289 320 79 14 chr1 32793753 32793916 -209870437 + MIR SINE MIR 30 202 -60 883 292 158 3 chr1 32794321 32794670 -209869683 + L3 LINE CR1 857 1259 -318 715 307 13 9 chr1 32794692 32794917 -209869436 + MIR SINE MIR 18 243 -19 273 208 52 39 chr1 32794979 32795056 -209869297 - MIR3 SINE MIR -48 160 83 2298 93 6 0 chr1 32795643 32795954 -209868399 + AluSp SINE Alu 1 313 0 335 269 144 38 chr1 32796067 32796227 -209868126 + MIR SINE MIR 12 188 -74 942 179 0 0 chr1 32796240 32796440 -209867913 + AluJb SINE Alu 140 339 0 272 257 107 71 chr1 32796474 32796614 -209867739 - MIR SINE MIR -35 227 83 383 284 60 0 chr1 32798100 32798216 -209866137 + MIR3 SINE MIR 13 135 -73 339 241 69 26 chr1 32798256 32798392 -209865961 - MIR SINE MIR -63 145 48 1579 136 114 0 chr1 32799753 32800026 -209864327 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr1 32800101 32800121 -209864232 + (A)n Simple_repeat Simple_repeat 1 20 0 1541 174 6 42 chr1 32800526 32800837 -209863516 + AluJo SINE Alu 1 300 -12 1182 159 0 5 chr1 32800915 32801081 -209863272 - AluSg/x SINE Alu -28 282 116 222 37 0 0 chr1 32801081 32801108 -209863245 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1182 159 0 5 chr1 32801108 32801142 -209863211 - AluSg/x SINE Alu -194 116 83 920 132 0 0 chr1 32801147 32801276 -209863077 - AluSq/x SINE Alu -183 129 1 6574 72 33 43 chr1 32801729 32802692 -209861661 - SVA Other Other 0 1386 433 1859 124 29 14 chr1 32802705 32803051 -209861302 - SVA Other Other -592 794 444 308 200 50 38 chr1 32804272 32804352 -209860001 + MIR SINE MIR 64 144 -64 187 179 51 0 chr1 32804392 32804431 -209859922 + L2 LINE L2 3192 3232 -81 2113 126 14 0 chr1 32804621 32804914 -209859439 + AluSx SINE Alu 1 297 -15 388 165 39 48 chr1 32804994 32805097 -209859256 - MIR SINE MIR -1 261 160 1793 171 13 3 chr1 32805146 32805445 -209858908 - AluJo SINE Alu -10 302 1 645 248 58 50 chr1 32806182 32806440 -209857913 + MIR SINE MIR 3 262 0 436 285 44 32 chr1 32806557 32806715 -209857638 + MIR3 SINE MIR 24 183 -25 838 169 14 7 chr1 32806755 32806897 -209857456 - AluJo/FRAM SINE Alu -3 309 167 521 195 0 0 chr1 32806897 32806984 -209857369 - FRAM/FAM SINE Alu -90 86 1 218 158 0 0 chr1 32807289 32807327 -209857026 - MIR SINE MIR -43 219 182 478 266 33 94 chr1 32807328 32807603 -209856750 - MIR SINE MIR -3 259 2 191 162 27 0 chr1 32807641 32807678 -209856675 + MIR SINE MIR 117 154 -108 349 229 140 21 chr1 32807753 32807921 -209856432 + MIR SINE MIR 67 262 0 191 389 0 0 chr1 32808495 32808585 -209855768 + MIR SINE MIR 77 166 -96 199 298 32 23 chr1 32808834 32808971 -209855382 - MIR SINE MIR -14 248 31 1836 106 0 4 chr1 32809167 32809402 -209854951 + AluSq SINE Alu 1 234 -79 359 255 10 20 chr1 32809462 32809564 -209854789 - MIR SINE MIR -78 184 84 22 35 0 0 chr1 32809694 32809723 -209854630 + AT_rich Low_complexity Low_complexity 1 29 0 1582 157 51 20 chr1 32809828 32809944 -209854409 + AluJo SINE Alu 1 112 -200 432 0 0 0 chr1 32809944 32809992 -209854361 + (TC)n Simple_repeat Simple_repeat 2 49 0 261 0 0 0 chr1 32809991 32810020 -209854333 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 1582 157 51 20 chr1 32809992 32810026 -209854327 + AluJo SINE Alu 112 143 -169 2424 104 3 0 chr1 32810026 32810335 -209854018 + AluSp SINE Alu 1 310 -3 1582 157 51 20 chr1 32810335 32810504 -209853849 + AluJo SINE Alu 143 302 -10 1716 93 86 91 chr1 32810644 32810680 -209853673 + L1MA3 LINE L1 5922 5957 -348 2410 61 0 0 chr1 32810680 32811002 -209853351 + AluY SINE Alu 2 323 0 1716 93 86 91 chr1 32811002 32811035 -209853318 + L1MA3 LINE L1 5957 5989 -316 823 141 0 15 chr1 32811035 32811170 -209853183 + FLAM_C SINE Alu 1 133 0 1716 93 86 91 chr1 32811170 32811329 -209853024 + L1MA3 LINE L1 5989 6152 -153 2475 86 0 3 chr1 32811329 32811632 -209852721 + AluSq SINE Alu 6 307 -6 1716 93 86 91 chr1 32811632 32811786 -209852567 + L1MA3 LINE L1 6152 6305 0 615 278 32 16 chr1 32812098 32812285 -209852068 + MIR SINE MIR 20 209 -53 430 254 106 0 chr1 32812430 32812572 -209851781 + MIR SINE MIR 81 237 -25 313 211 40 0 chr1 32812596 32812672 -209851681 + MIR3 SINE MIR 109 187 -21 207 0 0 0 chr1 32812863 32812886 -209851467 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 905 169 26 53 chr1 32812912 32813101 -209851252 + AluJb SINE Alu 85 268 -44 239 320 13 0 chr1 32813306 32813384 -209850969 - L2 LINE L2 -8 3305 3227 226 280 140 10 chr1 32813393 32813493 -209850860 + MIR SINE MIR 33 145 -63 1468 189 0 8 chr1 32813612 32813871 -209850482 + AluJb SINE Alu 1 257 -55 265 264 0 44 chr1 32814818 32814909 -209849444 + MIR SINE MIR 57 143 -65 439 293 208 0 chr1 32814939 32815151 -209849202 - MIR SINE MIR -2 260 5 495 209 20 40 chr1 32815153 32815301 -209849052 - MIR SINE MIR -54 208 64 2109 134 0 3 chr1 32815383 32815675 -209848678 + AluSx SINE Alu 1 291 -21 2331 87 10 10 chr1 32815684 32815984 -209848369 + AluSx SINE Alu 1 300 -12 191 159 23 23 chr1 32816211 32816255 -209848098 - L2 LINE L2 -8 3305 3262 376 276 112 40 chr1 32816277 32816429 -209847924 + MIR SINE MIR 49 211 -51 366 246 282 5 chr1 32816402 32816597 -209847756 - MIR SINE MIR 0 262 14 * 1965 138 27 3 chr1 32816885 32817182 -209847171 + AluSx SINE Alu 6 309 -3 2391 114 0 0 chr1 32817182 32817490 -209846863 + AluSc SINE Alu 1 308 -1 287 248 138 9 chr1 32817756 32817865 -209846488 + MIR SINE MIR 14 136 -126 332 200 0 0 chr1 32818041 32818101 -209846252 + Tigger5 DNA MER2_type 2264 2323 0 248 267 158 17 chr1 32818428 32818548 -209845805 + L3 LINE CR1 1430 1566 -11 2399 56 0 14 chr1 32818764 32819073 -209845280 + AluY SINE Alu 1 305 0 333 92 10 0 chr1 32819112 32819181 -209845172 - Alu SINE Alu 0 302 250 2334 111 3 0 chr1 32819281 32819587 -209844766 - AluSx SINE Alu -5 307 1 603 216 67 58 chr1 32819713 32819921 -209844432 - MIR SINE MIR -33 229 20 277 311 117 62 chr1 32820435 32820506 -209843847 + L2 LINE L2 2643 2709 -563 2216 106 7 0 chr1 32820506 32820808 -209843545 + AluSx SINE Alu 2 305 0 277 311 117 62 chr1 32820808 32820885 -209843468 + L2 LINE L2 2709 2780 -492 952 146 5 102 chr1 32820885 32820948 -209843405 - MER5A DNA MER1_type -2 187 119 2492 60 0 0 chr1 32820948 32821233 -209843120 + AluSc SINE Alu 1 285 -24 952 146 5 102 chr1 32821233 32821375 -209842978 - MER5A DNA MER1_type -70 119 2 277 311 117 62 chr1 32821375 32821818 -209842535 + L2 LINE L2 2780 3271 -1 2324 109 7 0 chr1 32821906 32822208 -209842145 - AluSx SINE Alu -8 304 1 242 256 151 0 chr1 32822208 32822294 -209842059 - L2 LINE L2 -23 3290 3192 2434 77 0 29 chr1 32822365 32822677 -209841676 + AluSp SINE Alu 2 304 -9 386 308 76 27 chr1 32822739 32822924 -209841429 - MIR SINE MIR -35 227 34 1320 258 142 57 chr1 32823073 32823666 -209840687 + MER115 DNA AcHobo 51 693 0 243 228 167 18 chr1 32823990 32824104 -209840249 - MIR SINE MIR -14 248 118 574 286 15 44 chr1 32824111 32824317 -209840036 + MIR SINE MIR 57 256 -6 2178 103 0 7 chr1 32824319 32824664 -209839689 + AluSc SINE Alu 1 343 0 264 312 11 0 chr1 32824774 32824867 -209839486 - MIR3 SINE MIR -4 204 111 1942 167 0 3 chr1 32825215 32825509 -209838844 + AluJo SINE Alu 1 293 -19 2200 118 0 3 chr1 32825515 32825820 -209838533 + AluSx SINE Alu 2 305 -7 948 98 0 0 chr1 32825820 32825942 -209838411 + AluSq SINE Alu 134 255 -58 189 0 0 0 chr1 32825948 32825969 -209838384 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1071 92 14 0 chr1 32826069 32826211 -209838142 + AluSg/x SINE Alu 155 298 -14 215 246 237 0 chr1 32826363 32826481 -209837872 - MIR SINE MIR -3 259 114 938 201 53 5 chr1 32826543 32826752 -209837601 + MER20 DNA MER1_type 1 219 0 2241 112 0 0 chr1 32826962 32827281 -209837072 + AluSq SINE Alu 1 319 0 280 307 88 44 chr1 32827385 32827457 -209836896 + L3 LINE CR1 1423 1490 -87 781 279 28 4 chr1 32827457 32827711 -209836642 + MIR SINE MIR 3 262 0 280 307 88 44 chr1 32827711 32827775 -209836578 + L3 LINE CR1 1490 1565 -12 * 415 274 6 74 chr1 32827772 32827947 -209836406 + L2 LINE L2 2897 3059 -213 1451 115 0 14 chr1 32828079 32828313 -209836040 + AluSg/x SINE Alu 88 318 0 1767 129 4 12 chr1 32828463 32828711 -209835642 - AluSq SINE Alu -67 246 1 1969 120 16 54 chr1 32828719 32829036 -209835317 - AluSg SINE Alu -5 305 1 1082 91 0 0 chr1 32829036 32829168 -209835185 - AluSq/x SINE Alu -177 136 5 860 192 0 19 chr1 32829194 32829350 -209835003 - FRAM SINE Alu -13 153 1 856 140 33 7 chr1 32829358 32829508 -209834845 + MLT1F1 LTR MaLR 410 563 -4 585 292 22 11 chr1 32829606 32829791 -209834562 + MIR SINE MIR 1 187 -75 434 238 32 40 chr1 32829803 32829929 -209834424 + L2 LINE L2 3177 3301 -12 1927 171 7 0 chr1 32829956 32830266 -209834087 - AluJo SINE Alu 0 312 1 418 220 114 38 chr1 32830268 32830400 -209833953 + L2 LINE L2 3168 3309 -4 183 253 67 40 chr1 32830397 32830472 -209833881 + MER5A DNA MER1_type 64 140 -49 * 727 169 0 8 chr1 32830506 32830630 -209833723 - FLAM_A SINE Alu -9 124 2 2005 152 0 10 chr1 32830641 32830951 -209833402 - AluSx SINE Alu -5 307 1 267 228 109 11 chr1 32831051 32831143 -209833210 - MIR3 SINE MIR -52 156 56 1123 165 0 98 chr1 32831413 32831616 -209832737 + LTR8 LTR ERV1 1 176 -515 2390 84 0 0 chr1 32831616 32831912 -209832441 - AluY SINE Alu -15 296 1 1123 165 0 98 chr1 32831912 32831962 -209832391 + LTR8 LTR ERV1 176 229 -462 1627 145 119 11 chr1 32832173 32832442 -209831911 - AluJb SINE Alu -12 300 3 208 314 50 6 chr1 32832450 32832609 -209831744 - L2 LINE L2 -1605 1709 1544 228 67 0 0 chr1 32832621 32832651 -209831702 + (CAGGG)n Simple_repeat Simple_repeat 4 33 0 211 167 0 30 chr1 32832651 32832662 -209831691 + GA-rich Low_complexity Low_complexity 2 12 -53 2179 88 20 14 chr1 32832662 32832959 -209831394 + AluSx SINE Alu 1 299 -13 211 167 0 30 chr1 32832959 32833013 -209831340 + GA-rich Low_complexity Low_complexity 12 65 0 2215 119 0 3 chr1 32833013 32833307 -209831046 + AluSg SINE Alu 1 293 -17 746 300 50 3 chr1 32833314 32833611 -209830742 + L1MC4a LINE L1 5605 5915 -1893 1655 202 9 25 chr1 32833661 32833978 -209830375 - AluJb SINE Alu 0 312 1 2396 82 7 0 chr1 32833987 32834290 -209830063 - AluSp SINE Alu -8 305 1 1050 428 43 0 chr1 32834363 32834639 -209829714 - AluSc SINE Alu -11 288 1 256 122 0 0 chr1 32834682 32834723 -209829630 + MER41B LTR ERV1 464 504 -131 2077 94 8 0 chr1 32834724 32834989 -209829364 - AluSg SINE Alu -9 301 35 517 239 21 0 chr1 32835352 32835494 -209828859 + LTR16A1 LTR ERVL 307 451 -6 * 1680 182 28 131 chr1 32835475 32835497 -209828856 + LTR8 LTR ERV1 214 237 -454 2334 98 0 7 chr1 32835497 32835802 -209828551 + AluSx SINE Alu 1 303 -9 1680 182 28 131 chr1 32835802 32835827 -209828526 + LTR8 LTR ERV1 237 263 -428 2116 84 0 8 chr1 32835827 32836088 -209828265 + AluSx SINE Alu 39 297 -15 1680 182 28 131 chr1 32836088 32836309 -209828044 + LTR8 LTR ERV1 263 404 -287 1485 95 153 15 chr1 32836309 32836571 -209827782 + AluSg SINE Alu 1 298 -2 1680 182 28 131 chr1 32836571 32836833 -209827520 + LTR8 LTR ERV1 404 691 0 2043 139 13 0 chr1 32837001 32837302 -209827051 - AluSx SINE Alu -7 305 1 2222 125 0 0 chr1 32837317 32837612 -209826741 - AluSg SINE Alu -15 295 1 226 339 16 48 chr1 32837752 32837876 -209826477 - MER5A DNA MER1_type -29 160 41 1601 110 0 0 chr1 32837883 32838083 -209826270 + AluSx SINE Alu 1 200 -112 443 47 47 0 chr1 32838246 32838310 -209826043 + (TTCTCC)n Simple_repeat Simple_repeat 1 67 0 769 141 0 22 chr1 32838313 32838448 -209825905 - FLAM_C SINE Alu 0 133 2 2327 110 3 3 chr1 32838623 32838932 -209825421 + AluSg SINE Alu 1 309 -1 2203 105 0 56 chr1 32839072 32839260 -209825093 - AluSp SINE Alu -6 307 143 2287 84 3 3 chr1 32839260 32839546 -209824807 - AluSg SINE Alu -24 286 1 2203 105 0 56 chr1 32839546 32839680 -209824673 - AluSp SINE Alu -170 143 3 1931 152 0 36 chr1 32840148 32840457 -209823896 - AluSx SINE Alu -14 298 1 354 255 11 11 chr1 32840526 32840620 -209823733 + MER5B DNA MER1_type 67 160 -18 477 265 201 29 chr1 32840648 32840739 -209823614 - L3 LINE CR1 -88 1489 1415 2343 112 7 0 chr1 32840739 32841044 -209823309 - AluSx SINE Alu -5 307 1 477 265 201 29 chr1 32841044 32841231 -209823122 - L3 LINE CR1 -162 1415 1163 241 331 93 17 chr1 32841288 32841460 -209822893 + L2 LINE L2 2731 2915 -399 2172 152 0 0 chr1 32841578 32841887 -209822466 + AluSx SINE Alu 1 309 -3 1800 168 0 11 chr1 32842132 32842418 -209821935 + AluJo SINE Alu 1 283 -29 2111 87 10 21 chr1 32842497 32842808 -209821545 - AluY SINE Alu 0 308 1 2313 92 0 7 chr1 32842830 32843166 -209821187 - AluSg SINE Alu 0 310 1 1873 156 24 0 chr1 32843175 32843464 -209820889 - AluJb SINE Alu -16 296 1 2333 98 7 0 chr1 32843766 32844062 -209820291 + AluY SINE Alu 1 298 -13 2191 135 0 0 chr1 32844075 32844372 -209819981 + AluSq SINE Alu 1 297 -16 1841 149 0 14 chr1 32844402 32844705 -209819648 + AluJb SINE Alu 11 309 0 190 214 0 24 chr1 32844844 32844886 -209819467 - MIR SINE MIR -103 159 119 1169 207 13 13 chr1 32845014 32845241 -209819112 - AluJo SINE Alu -85 227 1 2509 65 7 0 chr1 32845360 32845666 -209818687 - AluY SINE Alu -3 308 1 2345 72 45 0 chr1 32845670 32845961 -209818392 - AluY SINE Alu -7 304 1 1755 164 10 17 chr1 32846048 32846340 -209818013 - AluJb SINE Alu -22 290 1 2380 89 10 0 chr1 32846349 32846653 -209817700 - AluSp SINE Alu -6 307 1 362 165 71 47 chr1 32846733 32846818 -209817535 - MER5A DNA MER1_type 0 189 103 441 215 78 89 chr1 32846882 32846960 -209817393 - MER5A DNA MER1_type 0 189 112 1763 68 4 34 chr1 32846960 32847196 -209817157 - AluY SINE Alu 0 311 83 2643 47 0 3 chr1 32847196 32847497 -209816856 - AluY SINE Alu -11 300 1 441 215 78 89 chr1 32847497 32847608 -209816745 - MER5A DNA MER1_type -75 114 1 495 153 180 18 chr1 32847668 32847779 -209816574 - MER20 DNA MER1_type -90 129 1 1499 141 128 0 chr1 32849205 32849262 -209815091 - MER46B DNA MER2_type -2495 236 188 1830 176 7 7 chr1 32849262 32849557 -209814796 - AluJb SINE Alu -13 299 5 1499 141 128 0 chr1 32849557 32849690 -209814663 - MER46B DNA MER2_type -2543 188 113 1910 168 14 0 chr1 32849690 32849982 -209814371 - AluJo SINE Alu -16 296 1 1499 141 128 0 chr1 32849982 32850103 -209814250 - MER46B DNA MER2_type -2618 113 9 1764 175 133 3 chr1 32850103 32850485 -209813868 + MSTB1 LTR MaLR 1 432 0 384 194 43 11 chr1 32850657 32850750 -209813603 - MER103 DNA DNA -44 122 27 338 174 43 0 chr1 32851163 32851232 -209813121 + LTR37B LTR ERV1 344 415 -53 240 333 75 17 chr1 32851256 32851376 -209812977 + L2 LINE L2 3140 3266 -6 2533 86 0 0 chr1 32851941 32852243 -209812110 - AluSx SINE Alu -9 303 2 201 176 0 0 chr1 32852643 32852677 -209811676 + A-rich Low_complexity Low_complexity 1 34 0 2443 83 0 3 chr1 32853415 32853716 -209810637 + AluSq SINE Alu 1 300 -13 1922 120 10 34 chr1 32853894 32854205 -209810148 + AluSq SINE Alu 1 304 0 181 0 0 0 chr1 32854185 32854244 -209810109 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2188 127 0 3 chr1 32855073 32855380 -209808973 + AluSx SINE Alu 1 306 -6 320 318 93 0 chr1 32855391 32855498 -209808855 - MIR3 SINE MIR -41 167 51 1746 159 65 0 chr1 32855573 32855850 -209808503 + AluJb SINE Alu 1 295 -17 762 182 0 0 chr1 32856181 32856313 -209808040 - FLAM_C SINE Alu 0 133 2 198 0 0 0 chr1 32856749 32856771 -209807582 + (A)n Simple_repeat Simple_repeat 1 22 0 462 256 72 99 chr1 32857225 32857448 -209806905 + MIR SINE MIR 2 218 -44 1699 168 0 27 chr1 32857961 32858253 -209806100 - AluJo SINE Alu -16 296 13 25 0 0 0 chr1 32858368 32858393 -209805960 + AT_rich Low_complexity Low_complexity 1 25 0 2319 105 0 0 chr1 32858394 32858690 -209805663 + AluY SINE Alu 1 296 -15 2186 89 14 10 chr1 32860374 32860667 -209803686 - AluSp SINE Alu -19 294 1 1824 146 53 0 chr1 32861122 32861403 -209802950 - AluJo SINE Alu -16 296 1 21 0 0 0 chr1 32862541 32862562 -209801791 + AT_rich Low_complexity Low_complexity 1 21 0 1958 91 0 0 chr1 32862753 32862994 -209801359 - AluSq SINE Alu -28 285 45 458 153 0 35 chr1 32863197 32863282 -209801071 + FLAM_C SINE Alu 54 135 -8 225 273 0 0 chr1 32863498 32863553 -209800800 - L2 LINE L2 -1 3312 3258 357 313 73 13 chr1 32863951 32864101 -209800252 - MIR3 SINE MIR -12 196 38 1565 172 58 10 chr1 32864478 32864769 -209799584 - AluJb SINE Alu -7 305 1 24 0 0 0 chr1 32865146 32865170 -209799183 + AT_rich Low_complexity Low_complexity 1 24 0 456 244 153 9 chr1 32865298 32865523 -209798830 + MIR SINE MIR 3 262 0 2256 82 11 3 chr1 32866204 32866486 -209797867 + AluSq SINE Alu 11 294 -19 187 379 98 0 chr1 32866916 32867069 -209797284 - L2 LINE L2 -462 2852 2685 2239 77 0 21 chr1 32867088 32867375 -209796978 - AluSc SINE Alu -28 281 1 295 208 0 0 chr1 32867406 32867454 -209796899 - AluJ/monomer SINE Alu -260 48 1 180 0 0 0 chr1 32867480 32867500 -209796853 + (A)n Simple_repeat Simple_repeat 1 20 0 491 248 33 46 chr1 32867953 32868106 -209796247 + MIR3 SINE MIR 51 201 -7 2004 127 17 14 chr1 32868232 32868524 -209795829 - AluSx SINE Alu -19 293 1 369 296 74 30 chr1 32868679 32868882 -209795471 + L1ME4a LINE L1 5568 5779 -342 345 298 80 32 chr1 32868915 32869103 -209795250 - MIR SINE MIR 0 262 66 505 205 45 9 chr1 32869122 32869234 -209795119 + FRAM SINE Alu 60 175 -1 1734 158 10 52 chr1 32869438 32869585 -209794768 + AluJb SINE Alu 1 130 -182 2360 88 0 3 chr1 32869585 32869881 -209794472 + AluSq SINE Alu 1 295 -18 1734 158 10 52 chr1 32869881 32870043 -209794310 + AluJb SINE Alu 130 297 -15 253 248 95 36 chr1 32870093 32870230 -209794123 + L1ME4a LINE L1 5963 6107 -14 2015 128 3 17 chr1 32870532 32870828 -209793525 - AluSx SINE Alu -19 293 2 356 276 83 36 chr1 32870844 32871036 -209793317 - L1ME1 LINE L1 -96 6070 5870 237 247 91 0 chr1 32871222 32871299 -209793054 + L1ME2 LINE L1 6062 6145 -19 277 313 101 32 chr1 32871487 32871704 -209792649 - L2 LINE L2 -938 2376 2145 185 81 0 27 chr1 32871859 32871896 -209792457 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 481 221 35 153 chr1 32871982 32872236 -209792117 + MIR SINE MIR 18 241 -21 2220 116 13 0 chr1 32872303 32872605 -209791748 + AluSx SINE Alu 1 306 -6 1671 78 0 5 chr1 32872661 32872865 -209791488 + AluSg SINE Alu 1 203 -107 1794 140 0 0 chr1 32873029 32873286 -209791067 + AluSq SINE Alu 45 301 -12 343 295 43 14 chr1 32873533 32873672 -209790681 + L1ME LINE L1 5604 5746 -375 3873 154 58 18 chr1 32873814 32874543 -209789810 + L1MB7 LINE L1 5425 6182 -2 261 250 0 0 chr1 32874565 32874613 -209789740 + MER81 DNA DNA 1 48 -66 1462 120 48 0 chr1 32874614 32874823 -209789530 + AluSx SINE Alu 1 219 -93 764 100 10 0 chr1 32874823 32874923 -209789430 + AluSc SINE Alu 92 192 -117 409 224 41 0 chr1 32875088 32875186 -209789167 + MIR SINE MIR 99 200 -62 1764 136 25 3 chr1 32875202 32875488 -209788865 - AluJb SINE Alu -20 292 1 236 255 94 0 chr1 32876115 32876221 -209788132 - L2 LINE L2 -19 3253 3138 532 294 144 0 chr1 32876229 32876423 -209787930 - MIR SINE MIR -1 261 40 451 276 35 39 chr1 32876469 32876672 -209787681 - L2 LINE L2 -276 3037 2836 206 192 0 41 chr1 32877428 32877501 -209786852 + (TTCA)n Simple_repeat Simple_repeat 3 72 0 809 175 41 18 chr1 32877597 32877768 -209786585 - MER45A DNA AcHobo 0 178 4 22 56 0 0 chr1 32878011 32878047 -209786306 + AT_rich Low_complexity Low_complexity 1 36 0 2027 128 0 10 chr1 32878077 32878401 -209785952 - AluSx SINE Alu 0 321 1 442 162 61 10 chr1 32878536 32878635 -209785718 + MIR SINE MIR 156 259 -3 2509 79 0 6 chr1 32878638 32878953 -209785400 - AluSp SINE Alu 0 313 1 822 141 38 113 chr1 32879393 32879499 -209784854 + MER45A DNA AcHobo 1 89 -1492 2188 109 7 0 chr1 32879499 32879793 -209784560 - AluSx SINE Alu -3 309 14 822 141 38 113 chr1 32879793 32879871 -209784482 + MER45A DNA AcHobo 89 171 -7 228 349 0 0 chr1 32879979 32880145 -209784208 + (TG)n Simple_repeat Simple_repeat 1 166 0 279 310 11 0 chr1 32880529 32880703 -209783650 + (TG)n Simple_repeat Simple_repeat 1 176 0 228 329 18 0 chr1 32880621 32880785 -209783568 + G-rich Low_complexity Low_complexity 1 167 0 * 222 291 16 28 chr1 32880827 32881009 -209783344 + (TG)n Simple_repeat Simple_repeat 1 180 0 187 336 53 26 chr1 32881668 32881781 -209782572 + MIR3 SINE MIR 39 154 -54 312 232 14 0 chr1 32882196 32882265 -209782088 - MIR SINE MIR -61 147 78 1525 147 13 93 chr1 32882756 32883069 -209781284 - AluJo SINE Alu -24 288 1 422 254 208 36 chr1 32883227 32883318 -209781035 - L3 LINE CR1 -88 1489 1415 2305 112 7 0 chr1 32883318 32883623 -209780730 - AluSx SINE Alu -5 307 1 422 254 208 36 chr1 32883623 32883810 -209780543 - L3 LINE CR1 -162 1415 1163 212 326 93 17 chr1 32883867 32884039 -209780314 + L2 LINE L2 2731 2915 -399 2119 152 0 0 chr1 32884157 32884466 -209779887 + AluSx SINE Alu 1 309 -3 1751 168 0 11 chr1 32884711 32884997 -209779356 + AluJo SINE Alu 1 283 -29 2380 63 0 3 chr1 32885076 32885385 -209778968 - AluY SINE Alu 0 308 1 2257 105 7 0 chr1 32885387 32885681 -209778672 - AluSx SINE Alu -16 296 1 672 105 58 12 chr1 32885908 32886080 -209778273 + (TA)n Simple_repeat Simple_repeat 1 180 0 38 39 0 0 chr1 32886083 32886135 -209778218 + AT_rich Low_complexity Low_complexity 1 52 0 641 207 7 43 chr1 32886165 32886294 -209778059 + FLAM_A SINE Alu 6 131 -180 2185 119 3 10 chr1 32886294 32886605 -209777748 + AluSc SINE Alu 1 309 0 2335 76 0 7 chr1 32886767 32887055 -209777298 - AluSq SINE Alu -27 286 1 526 198 17 17 chr1 32887056 32887172 -209777181 - MIR SINE MIR -96 166 51 239 33 0 0 chr1 32887768 32887798 -209776555 + MER39B LTR ERV1 20 49 -604 882 203 104 97 chr1 32888404 32888517 -209775836 + MER63C DNA MER1_type 1 112 -948 2121 132 3 0 chr1 32888517 32888813 -209775540 + AluSx SINE Alu 1 297 -15 882 203 104 97 chr1 32888813 32888863 -209775490 + MER63C DNA MER1_type 112 160 -900 1507 198 21 3 chr1 32888863 32889040 -209775313 - AluJo SINE Alu -13 299 114 208 0 62 0 chr1 32889040 32889072 -209775281 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1507 198 21 3 chr1 32889072 32889182 -209775171 - AluJo SINE Alu -198 114 7 882 203 104 97 chr1 32889182 32889397 -209774956 + MER63C DNA MER1_type 160 388 -672 2214 98 17 10 chr1 32889397 32889694 -209774659 - AluSx SINE Alu -13 299 1 882 203 104 97 chr1 32889694 32889869 -209774484 + MER63C DNA MER1_type 388 560 -370 3739 135 51 39 chr1 32889871 32890516 -209773837 + MER39B LTR ERV1 1 653 0 1301 156 40 47 chr1 32890520 32890664 -209773689 + MER63C DNA MER1_type 565 708 -354 1997 108 0 66 chr1 32890664 32890998 -209773355 + AluSx SINE Alu 1 312 0 1301 156 40 47 chr1 32890998 32891129 -209773224 + MER63C DNA MER1_type 708 838 -94 1404 145 0 5 chr1 32891151 32891358 -209772995 - AluJo SINE Alu -23 289 84 745 143 0 32 chr1 32891365 32891491 -209772862 - FLAM_C SINE Alu -9 124 3 501 209 29 0 chr1 32891491 32891596 -209772757 + MER63C DNA MER1_type 818 925 -5 30 0 0 0 chr1 32891658 32891688 -209772665 + AT_rich Low_complexity Low_complexity 1 30 0 331 218 69 20 chr1 32891795 32891896 -209772457 - MIR3 SINE MIR -16 192 87 211 276 81 11 chr1 32891947 32892034 -209772319 - MIR SINE MIR -57 151 59 216 282 27 9 chr1 32892297 32892407 -209771946 - MIR SINE MIR -77 131 20 2338 83 0 7 chr1 32892617 32892917 -209771436 - AluSx SINE Alu 0 312 15 2722 211 78 103 chr1 32893612 32894186 -209770167 + L1M4 LINE L1 5 592 -5950 498 17 0 0 chr1 32894186 32894245 -209770108 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 2722 211 78 103 chr1 32894245 32894278 -209770075 + L1M4 LINE L1 592 624 -5918 939 29 22 22 chr1 32894278 32894417 -209769936 + (TCTA)n Simple_repeat Simple_repeat 1 139 0 2045 135 0 0 chr1 32894417 32894699 -209769654 - AluSx SINE Alu -30 282 1 2722 211 78 103 chr1 32894699 32895044 -209769309 + L1M4 LINE L1 623 928 -5614 2134 132 0 0 chr1 32895044 32895331 -209769022 + AluSx SINE Alu 1 287 -25 2722 211 78 103 chr1 32895331 32895521 -209768832 + L1M4 LINE L1 928 1121 -5421 843 187 0 0 chr1 32895509 32895664 -209768689 + L1M4 LINE L1 4888 5042 -1104 * 1422 155 17 13 chr1 32895665 32895904 -209768449 + AluJb SINE Alu 1 240 -72 1856 105 8 8 chr1 32895906 32896173 -209768180 - AluSx SINE Alu -45 267 1 583 279 90 18 chr1 32896908 32896966 -209767387 - L1MC4 LINE L1 -95 7713 7661 2045 115 17 14 chr1 32896966 32897262 -209767091 - AluSq SINE Alu -16 297 1 583 279 90 18 chr1 32897262 32897696 -209766657 - L1MC4 LINE L1 -147 7661 7274 1187 198 204 9 chr1 32897728 32898071 -209766282 - L1MC4 LINE L1 -1166 6876 6467 2014 128 14 0 chr1 32899441 32899737 -209764616 + AluSq SINE Alu 1 300 -13 1196 144 0 0 chr1 32899737 32899904 -209764449 + AluSg/x SINE Alu 134 300 -12 245 206 63 16 chr1 32900071 32900134 -209764219 + MIR SINE MIR 82 147 -115 238 279 243 15 chr1 32900146 32900282 -209764071 + MER5A DNA MER1_type 1 167 -22 2342 70 25 0 chr1 32900469 32900754 -209763599 - AluY SINE Alu -19 292 1 1713 168 55 7 chr1 32901591 32901882 -209762471 - AluJo SINE Alu -7 305 1 800 178 0 15 chr1 32901922 32902057 -209762296 - FLAM_A SINE Alu 0 133 1 2501 77 0 3 chr1 32902319 32902630 -209761723 + AluY SINE Alu 1 310 -1 2280 99 3 0 chr1 32902730 32903024 -209761329 + AluSp SINE Alu 1 295 -18 1107 203 79 12 chr1 32903134 32903375 -209760978 + AluJo SINE Alu 1 257 -55 2056 129 3 0 chr1 32903804 32904091 -209760262 + AluSx SINE Alu 1 288 -24 1690 182 39 0 chr1 32905314 32905594 -209758759 - AluJo SINE Alu -21 291 1 2158 126 3 7 chr1 32905671 32905981 -209758372 - AluSx SINE Alu -3 309 1 1058 127 0 0 chr1 32906172 32906347 -209758006 - AluSg/x SINE Alu 0 309 135 308 49 24 0 chr1 32906381 32906422 -209757931 + AluY SINE Alu 1 42 -259 235 269 77 0 chr1 32908047 32908125 -209756228 - L2 LINE L2 -58 3255 3172 875 304 183 33 chr1 32908177 32908841 -209755512 - L2 LINE L2 -209 3063 2500 2173 124 3 0 chr1 32908841 32909148 -209755205 - AluSx SINE Alu -4 308 1 875 304 183 33 chr1 32909148 32909161 -209755192 - L2 LINE L2 -772 2500 2490 180 0 0 0 chr1 32909161 32909181 -209755172 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 875 304 183 33 chr1 32909181 32909649 -209754704 - L2 LINE L2 -782 2490 1751 247 330 90 11 chr1 32910234 32910422 -209753931 - L2 LINE L2 -2187 1127 925 1798 179 10 0 chr1 32910527 32910823 -209753530 - AluJb SINE Alu -13 299 1 2413 93 10 0 chr1 32911117 32911419 -209752934 + AluSq SINE Alu 1 305 -8 341 226 64 166 chr1 32911798 32912033 -209752320 + MIR SINE MIR 51 261 -1 2241 126 0 0 chr1 32912409 32912710 -209751643 + AluSx SINE Alu 1 301 -11 1677 144 69 36 chr1 32913049 32913410 -209750943 - THE1C LTR MaLR 0 375 3 1769 156 13 27 chr1 32913459 32913760 -209750593 + AluJb SINE Alu 1 297 -15 564 221 84 0 chr1 32914166 32914320 -209750033 - L1MC4 LINE L1 -144 7898 7732 1889 127 6 48 chr1 32914736 32915050 -209749303 - AluSq SINE Alu -12 301 1 2349 92 0 0 chr1 32915068 32915360 -209748993 - AluY SINE Alu -19 292 1 1928 142 3 38 chr1 32915738 32916054 -209748299 - AluJb SINE Alu -7 305 1 776 176 0 40 chr1 32916058 32916206 -209748147 - FLAM_C SINE Alu 0 143 2 2778 168 30 39 chr1 32916456 32916963 -209747390 - Tigger7 DNA MER2_type -1985 502 1 1711 153 28 17 chr1 32917004 32917162 -209747191 - AluJo SINE Alu -21 291 127 2376 96 0 0 chr1 32917162 32917463 -209746890 - AluSc SINE Alu -8 301 1 1711 153 28 17 chr1 32917463 32917592 -209746761 - AluJo SINE Alu -185 127 1 1087 115 39 0 chr1 32917740 32917896 -209746457 - AluSg/x SINE Alu -15 295 134 2284 99 7 3 chr1 32917898 32918202 -209746151 - AluSx SINE Alu -7 305 1 230 182 23 80 chr1 32918527 32918615 -209745738 - LTR67 LTR ERVL 0 557 475 199 180 20 40 chr1 32918997 32919047 -209745306 + MIR3 SINE MIR 124 172 -36 314 246 0 0 chr1 32919079 32919148 -209745205 + MER5A DNA MER1_type 32 100 -89 249 194 30 15 chr1 32919151 32919218 -209745135 + L1ME LINE L1 5737 5804 -317 628 216 83 62 chr1 32919488 32919649 -209744704 + MIR SINE MIR 7 176 -86 1766 148 21 3 chr1 32919649 32919939 -209744414 - AluSg SINE Alu -15 295 1 628 216 83 62 chr1 32919939 32920018 -209744335 + MIR SINE MIR 176 252 -10 357 339 137 37 chr1 32920643 32920739 -209743614 + L2 LINE L2 2261 2346 -968 1762 188 112 0 chr1 32920739 32921095 -209743258 + MSTD LTR MaLR 1 396 0 357 339 137 37 chr1 32921095 32921399 -209742954 + L2 LINE L2 2346 2701 -613 787 143 0 57 chr1 32921412 32921552 -209742801 - FLAM_C SINE Alu -1 132 1 231 284 42 21 chr1 32921686 32921781 -209742572 + L2 LINE L2 2857 2953 -319 1344 157 103 97 chr1 32921781 32922132 -209742221 - MLT1A1 LTR MaLR -2 363 11 1324 158 69 133 chr1 32922122 32922483 -209741870 + MLT1A1 LTR MaLR 28 365 0 * 346 298 69 8 chr1 32922618 32922749 -209741604 + L2 LINE L2 3134 3272 0 594 262 48 63 chr1 32922770 32923022 -209741331 + MIR SINE MIR 9 256 -6 2134 94 20 44 chr1 32923097 32923394 -209740959 - AluSq SINE Alu -23 290 1 1866 135 40 13 chr1 32923396 32923699 -209740654 - AluJb SINE Alu -1 311 1 2255 108 7 3 chr1 32924185 32924492 -209739861 - AluSx SINE Alu -4 308 1 263 307 122 0 chr1 32924848 32924977 -209739376 - MIR SINE MIR -66 142 9 367 113 0 0 chr1 32925034 32925087 -209739266 - AluSx SINE Alu -7 293 241 1686 101 0 0 chr1 32925087 32925294 -209739059 - AluSx SINE Alu -105 207 1 186 327 0 0 chr1 32925426 32925481 -209738872 + L2 LINE L2 3136 3190 -82 277 276 58 12 chr1 32925882 32926013 -209738340 + MIR SINE MIR 20 152 -73 309 51 0 0 chr1 32926410 32926449 -209737904 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2016 139 0 4 chr1 32926449 32926730 -209737623 - AluSx SINE Alu -32 280 1 274 352 8 16 chr1 32926932 32927060 -209737293 + MIR3 SINE MIR 76 202 -6 307 276 22 45 chr1 32927288 32927345 -209737008 + MIR3 SINE MIR 10 67 -141 2283 117 3 0 chr1 32927345 32927653 -209736700 - AluSq SINE Alu -4 309 1 307 276 22 45 chr1 32927653 32927729 -209736624 + MIR3 SINE MIR 67 140 -68 287 268 87 16 chr1 32927829 32927956 -209736397 - MIR SINE MIR -126 136 1 670 163 15 37 chr1 32927959 32928094 -209736259 - FLAM_A SINE Alu 0 133 2 530 284 113 5 chr1 32928254 32928448 -209735905 + MIR SINE MIR 41 255 -7 195 229 0 0 chr1 32928651 32928686 -209735667 + MIR SINE MIR 85 119 -89 334 300 61 9 chr1 32928921 32929035 -209735318 - MIR3 SINE MIR -110 98 1 896 121 6 55 chr1 32929370 32929535 -209734818 + L1MD2 LINE L1 5779 5935 -307 4346 162 64 22 chr1 32929537 32930327 -209734026 - L1MB8 LINE L1 -10 6168 5413 2284 108 32 40 chr1 32930327 32930705 -209733648 + THE1C LTR MaLR 1 375 0 1973 145 28 0 chr1 32930711 32930994 -209733359 - AluSx SINE Alu -18 294 4 4346 162 64 22 chr1 32930994 32931104 -209733249 - L1MB8 LINE L1 -769 5409 5221 1210 152 117 49 chr1 32931102 32931366 -209732987 + L1MD2 LINE L1 5920 6201 -158 * 2467 215 79 82 chr1 32931372 32931952 -209732401 - MER21B LTR ERV1 -84 779 200 2197 124 0 0 chr1 32931952 32932250 -209732103 - AluSg SINE Alu -12 298 1 2467 215 79 82 chr1 32932250 32932450 -209731903 - MER21B LTR ERV1 -663 200 1 769 158 0 72 chr1 32932450 32932547 -209731806 + L1MD1 LINE L1 6082 6166 -76 2534 72 0 0 chr1 32932547 32932851 -209731502 - AluY SINE Alu -7 304 1 769 158 0 72 chr1 32932851 32932905 -209731448 + L1MD1 LINE L1 6166 6222 -20 563 228 8 31 chr1 32933270 32933397 -209730956 - HsTC2 DNA Tc2 -1772 126 3 661 191 0 0 chr1 32933422 32933532 -209730821 + FLAM_A SINE Alu 1 110 -32 6944 172 172 47 chr1 32933534 32935095 -209729258 + MER52A LTR ERV1 1 1755 0 754 126 17 17 chr1 32935126 32935245 -209729108 + FRAM SINE Alu 50 168 -8 227 271 29 0 chr1 32935385 32935455 -209728898 + HAL1b LINE L1 1197 1268 -80 242 241 0 0 chr1 32936314 32936368 -209727985 + MER3 DNA MER1_type 2 55 -154 1241 234 36 7 chr1 32936373 32936646 -209727707 - MER21B LTR ERV1 -87 776 496 3208 140 57 32 chr1 32936646 32937054 -209727299 + Tigger7 DNA MER2_type 1 428 -305 867 169 22 33 chr1 32937054 32937237 -209727116 + L1PA16 LINE L1 5982 6162 -4 3208 140 57 32 chr1 32937237 32937394 -209726959 + Tigger7 DNA MER2_type 428 580 -153 589 89 151 103 chr1 32937385 32937462 -209726891 + Tigger7 DNA MER2_type 2272 2344 -143 * 1779 148 25 4 chr1 32937462 32937763 -209726590 + AluJb SINE Alu 1 307 0 589 89 151 103 chr1 32937763 32937830 -209726523 + Tigger7 DNA MER2_type 2344 2424 -63 449 240 192 112 chr1 32937830 32938117 -209726236 - MER21B LTR ERV1 -374 489 180 693 184 0 24 chr1 32938121 32938246 -209726107 + FLAM_A SINE Alu 6 127 -15 473 168 89 192 chr1 32938246 32938449 -209725904 - MER21B LTR ERV1 -669 194 13 229 256 96 48 chr1 32938709 32938834 -209725519 - L2 LINE L2 -4 3309 3179 203 269 15 60 chr1 32938915 32938982 -209725371 + L2 LINE L2 3209 3272 0 * 289 265 113 0 chr1 32938981 32939090 -209725263 + MIR SINE MIR 50 172 -63 2110 111 7 20 chr1 32940370 32940676 -209723677 - AluSx SINE Alu -10 302 1 2338 98 0 0 chr1 32940845 32941140 -209723213 - AluSc SINE Alu -14 295 1 443 242 0 0 chr1 32941447 32941546 -209722807 + L2 LINE L2 2214 2312 -1002 31 0 0 0 chr1 32941726 32941757 -209722596 + AT_rich Low_complexity Low_complexity 1 31 0 472 243 199 38 chr1 32941757 32941881 -209722472 - L1ME4a LINE L1 -3 6118 6015 1848 129 92 0 chr1 32941881 32942152 -209722201 - AluSx SINE Alu -16 296 1 472 243 199 38 chr1 32942152 32942373 -209721980 - L1ME4a LINE L1 -106 6015 5717 208 71 71 0 chr1 32942421 32942463 -209721890 + A-rich Low_complexity Low_complexity 2 46 0 2358 90 0 3 chr1 32942473 32942772 -209721581 + AluSg SINE Alu 2 299 -11 203 182 0 0 chr1 32942775 32942808 -209721545 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 315 0 0 0 chr1 32943534 32943569 -209720784 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 468 0 0 0 chr1 32943568 32943620 -209720733 + (TG)n Simple_repeat Simple_repeat 1 52 0 240 211 19 0 chr1 32943942 32943994 -209720359 + L2 LINE L2 3261 3313 0 32 47 0 16 chr1 32944584 32944615 -209719738 + AT_rich Low_complexity Low_complexity 1 31 -32 1690 165 47 7 chr1 32944615 32944894 -209719459 - AluJo SINE Alu -21 291 2 32 47 0 16 chr1 32944894 32944926 -209719427 + AT_rich Low_complexity Low_complexity 31 63 0 21 36 0 0 chr1 32945123 32945151 -209719202 + AT_rich Low_complexity Low_complexity 1 28 0 219 103 0 0 chr1 32945277 32945316 -209719037 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1340 150 0 5 chr1 32945319 32945519 -209718834 - AluSg/x SINE Alu -29 281 83 35 54 0 0 chr1 32945717 32945773 -209718580 + AT_rich Low_complexity Low_complexity 1 56 0 771 153 0 0 chr1 32945773 32945891 -209718462 - FLAM_C SINE Alu -15 118 1 1780 180 0 29 chr1 32945893 32946204 -209718149 - AluJb SINE Alu -10 302 1 654 284 172 16 chr1 32947087 32947202 -209717151 - L2 LINE L2 -6 3307 3211 1659 163 3 51 chr1 32947202 32947515 -209716838 - AluJb SINE Alu -14 298 1 654 284 172 16 chr1 32947515 32947772 -209716581 - L2 LINE L2 -102 3211 2877 227 267 53 27 chr1 32948022 32948097 -209716256 + L2 LINE L2 3214 3290 -23 196 336 9 18 chr1 32948361 32948444 -209715909 + MIR SINE MIR 65 148 -114 2149 114 0 37 chr1 32948444 32948768 -209715585 + AluSx SINE Alu 1 312 0 196 336 9 18 chr1 32948768 32948794 -209715559 + MIR SINE MIR 148 173 -89 1765 152 66 0 chr1 32949187 32949476 -209714877 - AluJb SINE Alu -2 310 3 2497 66 7 0 chr1 32949546 32949847 -209714506 - AluSp SINE Alu -10 303 1 322 306 51 38 chr1 32950871 32951028 -209713325 + MIR SINE MIR 3 161 -101 2112 115 7 3 chr1 32951313 32951601 -209712752 - AluSx SINE Alu -23 289 1 2338 133 3 6 chr1 32951680 32952018 -209712335 - MER1B DNA MER1_type 0 337 1 261 377 22 0 chr1 32952084 32952222 -209712131 - L2 LINE L2 -236 3036 2896 2133 105 56 0 chr1 32952330 32952616 -209711737 - AluSx SINE Alu -10 302 1 1742 147 31 21 chr1 32952945 32953103 -209711250 - AluJo SINE Alu -12 300 136 2353 104 3 3 chr1 32953103 32953411 -209710942 - AluSp SINE Alu -5 308 1 1209 198 0 14 chr1 32953411 32953538 -209710815 - AluJo SINE Alu -177 135 12 1742 147 31 21 chr1 32953411 32953538 -209710815 - AluJo SINE Alu -176 136 12 374 300 73 33 chr1 32953760 32953910 -209710443 - L2 LINE L2 -632 2682 2527 1111 171 11 0 chr1 32954109 32954296 -209710057 - AluJb SINE Alu -4 308 120 739 202 5 62 chr1 32954297 32954405 -209709948 + L1ME3A LINE L1 5940 6035 -135 2390 71 0 0 chr1 32954405 32954712 -209709641 - AluY SINE Alu 0 307 1 739 202 5 62 chr1 32954712 32954795 -209709558 + L1ME3A LINE L1 6035 6121 -49 553 0 82 0 chr1 32954803 32954900 -209709453 + (TA)n Simple_repeat Simple_repeat 1 105 0 1804 120 149 40 chr1 32954902 32955278 -209709075 - MSTA LTR MaLR -11 417 1 263 296 84 70 chr1 32955349 32955690 -209708663 - L2 LINE L2 -202 3070 2716 1760 153 64 7 chr1 32956941 32957223 -209707130 - AluJb SINE Alu -14 298 1 454 271 102 12 chr1 32957480 32957646 -209706707 + MIR3 SINE MIR 17 197 -11 1033 171 0 59 chr1 32958362 32958549 -209705804 + FAM SINE Alu 1 47 -2 512 281 66 36 chr1 32958563 32958671 -209705682 - L1ME4a LINE L1 -34 6087 5984 1777 144 72 7 chr1 32958671 32958949 -209705404 - AluSx SINE Alu -16 296 1 512 281 66 36 chr1 32958949 32959175 -209705178 - L1ME4a LINE L1 -137 5984 5743 534 208 149 0 chr1 32959188 32959342 -209705011 - L1ME4a LINE L1 -433 5688 5512 279 286 155 0 chr1 32959549 32959633 -209704720 - L2 LINE L2 -9 3304 3208 2292 109 0 6 chr1 32959906 32960217 -209704136 - AluSx SINE Alu -2 310 2 281 331 49 31 chr1 32960469 32960632 -209703721 + L2 LINE L2 2410 2575 -739 1633 170 45 7 chr1 32960787 32961076 -209703277 + AluJo SINE Alu 1 300 -12 614 288 119 45 chr1 32961076 32961449 -209702904 + L2 LINE L2 2048 2448 -866 3881 168 77 69 chr1 32961478 32961808 -209702545 - L1MB3 LINE L1 0 6183 5857 1511 161 145 0 chr1 32961808 32962063 -209702290 - AluJo SINE Alu -10 292 1 3881 168 77 69 chr1 32962063 32963709 -209700644 - L1MB3 LINE L1 -326 5857 4195 624 170 0 19 chr1 32963723 32963829 -209700524 - AluJb SINE Alu -15 297 194 2542 78 0 0 chr1 32964209 32964516 -209699837 + AluSx SINE Alu 1 307 -5 341 286 64 47 chr1 32964690 32964917 -209699436 - MIR SINE MIR -11 251 21 236 337 0 11 chr1 32964958 32965047 -209699306 - L2 LINE L2 0 3313 3226 247 321 139 0 chr1 32966646 32966783 -209697570 + L2 LINE L2 2730 2885 -429 * 2514 247 96 57 chr1 32966777 32967072 -209697281 - L2 LINE L2 -1 3312 3030 2416 81 7 0 chr1 32967072 32967370 -209696983 - AluSp SINE Alu -13 300 1 2514 247 96 57 chr1 32967370 32968445 -209695908 - L2 LINE L2 -283 3030 1894 546 148 0 0 chr1 32968445 32968533 -209695820 - FLAM_A SINE Alu -6 136 49 1933 146 6 37 chr1 32968550 32968871 -209695482 + AluSx SINE Alu 1 311 -1 1321 74 6 0 chr1 32969300 32969463 -209694890 - AluSp SINE Alu -16 297 134 2203 99 3 10 chr1 32969463 32969777 -209694576 - AluSp SINE Alu 0 313 9 315 243 108 36 chr1 32970056 32970167 -209694186 + MIR SINE MIR 34 152 -110 714 306 57 9 chr1 32970676 32970905 -209693448 - MIR SINE MIR -17 245 6 2021 128 0 4 chr1 32971103 32971426 -209692927 - AluSc SINE Alu 0 322 1 474 278 26 20 chr1 32971427 32971578 -209692775 - MIR SINE MIR -100 162 11 216 253 38 13 chr1 32972302 32972381 -209691972 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 2540 80 0 0 chr1 32972499 32972799 -209691554 - AluY SINE Alu -11 300 1 525 48 0 0 chr1 32972964 32973026 -209691327 - AluY SINE Alu -255 63 2 1747 155 39 18 chr1 32973054 32973338 -209691015 + AluJb SINE Alu 1 290 -22 894 167 0 0 chr1 32973376 32973508 -209690845 - FLAM_C SINE Alu -1 132 1 237 83 0 0 chr1 32973691 32973727 -209690626 + (GAA)n Simple_repeat Simple_repeat 2 37 0 261 242 128 67 chr1 32975573 32975600 -209688753 - MIR SINE MIR -18 244 220 363 44 0 0 chr1 32975600 32975645 -209688708 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 242 128 67 chr1 32975645 32975766 -209688587 - MIR SINE MIR -42 220 87 201 282 0 0 chr1 32975806 32975845 -209688508 + L2 LINE L2 3245 3283 -30 358 325 122 20 chr1 32976580 32976777 -209687576 - MIR SINE MIR -17 245 29 227 121 0 0 chr1 32979326 32979359 -209684994 - MIR SINE MIR -122 86 54 * 244 287 263 34 chr1 32979357 32979372 -209684981 - MIR SINE MIR -3 259 249 2133 119 17 3 chr1 32979372 32979665 -209684688 + AluSx SINE Alu 1 297 -15 244 287 263 34 chr1 32979665 32979858 -209684495 - MIR SINE MIR -13 249 3 189 156 67 44 chr1 32980148 32980193 -209684160 - MIR SINE MIR -132 76 31 275 345 167 0 chr1 32980420 32980588 -209683765 - MIR SINE MIR -21 241 46 213 335 153 18 chr1 32981475 32981645 -209682708 + MIR3 SINE MIR 16 208 0 261 303 63 46 chr1 32983070 32983214 -209681139 - MIR SINE MIR -62 146 3 424 155 0 24 chr1 32983731 32983815 -209680538 - AluJ/FRAM SINE Alu -6 306 225 393 225 0 106 chr1 32984579 32984691 -209679662 + MIR SINE MIR 22 118 -90 2299 96 21 0 chr1 32984691 32984982 -209679371 - AluSq SINE Alu -11 302 6 393 225 0 106 chr1 32984982 32985011 -209679342 + MIR SINE MIR 118 148 -60 757 112 0 19 chr1 32985012 32985119 -209679234 - AluSg/x SINE Alu -20 292 188 1790 87 0 0 chr1 32985119 32985338 -209679015 - AluSx SINE Alu -93 219 1 1727 172 7 17 chr1 32985340 32985636 -209678717 - AluJb SINE Alu -19 293 1 298 284 11 42 chr1 32985734 32985829 -209678524 + MIR SINE MIR 44 135 -73 784 154 0 0 chr1 32986798 32986921 -209677432 - MER41A LTR ERV1 0 554 432 785 153 12 55 chr1 32986921 32987084 -209677269 - MER41C LTR ERV1 -398 156 1 357 302 89 22 chr1 32987086 32987265 -209677088 + MIR SINE MIR 18 208 -54 575 164 57 16 chr1 32987483 32987605 -209676748 - L2 LINE L2 0 3272 3146 265 128 0 0 chr1 32987988 32988027 -209676326 - 5S rRNA rRNA -82 39 1 205 189 0 0 chr1 32988040 32988077 -209676276 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 409 190 70 20 chr1 32988106 32988206 -209676147 + MIR SINE MIR 36 140 -68 419 94 47 0 chr1 32988298 32988362 -209675991 - FRAM/FAM SINE Alu -94 82 16 21 36 0 0 chr1 32988614 32988642 -209675711 + AT_rich Low_complexity Low_complexity 1 28 0 2086 133 7 0 chr1 32988642 32988928 -209675425 - AluSx SINE Alu -24 288 1 218 323 317 0 chr1 32988928 32989114 -209675239 + L2 LINE L2 2992 3236 -36 2036 107 0 11 chr1 32990212 32990517 -209673836 + AluSx SINE Alu 17 318 0 333 196 186 0 chr1 32990666 32990763 -209673590 + MIR SINE MIR 78 192 -70 374 285 20 28 chr1 32990809 32991010 -209673343 - MIR SINE MIR 0 262 2 299 262 112 0 chr1 32991041 32991148 -209673205 + MIR3 SINE MIR 82 200 -8 401 297 67 102 chr1 32991602 32991915 -209672438 - L2 LINE L2 -2 3270 2969 424 307 127 33 chr1 32991976 32992220 -209672133 - L2 LINE L2 -443 2871 2605 353 280 223 0 chr1 32992239 32992396 -209671957 - MLT1J LTR MaLR -232 279 88 417 264 46 26 chr1 32992450 32992470 -209671883 + MIR SINE MIR 11 29 -233 2396 93 0 7 chr1 32992470 32992770 -209671583 + AluSx SINE Alu 1 298 -14 417 264 46 26 chr1 32992770 32992923 -209671430 + MIR SINE MIR 29 232 -30 248 316 26 53 chr1 32993344 32993458 -209670895 + MIR SINE MIR 80 190 -72 312 280 72 16 chr1 32994046 32994171 -209670182 + MIR3 SINE MIR 14 145 -63 1694 131 13 93 chr1 32994234 32994547 -209669806 + AluJo SINE Alu 1 288 -24 632 245 21 7 chr1 32994944 32995087 -209669266 + L2 LINE L2 3159 3303 -10 307 238 0 12 chr1 32995230 32995314 -209669039 + L1ME4a LINE L1 5832 5914 -207 2011 135 0 7 chr1 32995341 32995630 -209668723 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr1 32995630 32995654 -209668699 + AT_rich Low_complexity Low_complexity 1 24 0 2375 119 0 0 chr1 32995740 32996052 -209668301 - AluSx SINE Alu 0 312 1 272 319 11 32 chr1 32996071 32996165 -209668188 - L2 LINE L2 -20 3252 3161 279 241 58 11 chr1 32996369 32996456 -209667897 + MIR3 SINE MIR 71 161 -47 2822 117 40 46 chr1 32996500 32996568 -209667785 - L1MA8 LINE L1 -7 6284 6217 1896 150 0 0 chr1 32996568 32996848 -209667505 + AluJb SINE Alu 1 280 -32 212 0 36 0 chr1 32996851 32996879 -209667474 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2822 117 40 46 chr1 32996879 32997327 -209667026 - L1MA8 LINE L1 -76 6215 5767 884 224 0 0 chr1 32997328 32997507 -209666846 - AluSq SINE Alu -17 296 118 864 159 0 0 chr1 32997999 32998125 -209666228 - FLAM_C SINE Alu -17 126 1 1243 149 5 5 chr1 32998130 32998325 -209666028 - AluSp SINE Alu -2 311 117 1421 140 4 0 chr1 32998325 32998554 -209665799 - L1MB3 LINE L1 -173 6010 5781 539 316 87 4 chr1 32999128 32999359 -209664994 - MIR SINE MIR 0 262 13 1904 154 13 10 chr1 32999528 32999839 -209664514 - AluJb SINE Alu 0 312 1 366 215 157 41 chr1 32999840 32999961 -209664392 - MIR SINE MIR -56 152 18 295 299 88 15 chr1 33000112 33000249 -209664104 + MIR3 SINE MIR 4 150 -58 2485 67 3 3 chr1 33000716 33001016 -209663337 - AluSp SINE Alu -13 300 1 297 298 35 0 chr1 33001334 33001448 -209662905 - L1MC4 LINE L1 -1 8041 7924 290 298 0 10 chr1 33001451 33001555 -209662798 + (TCCA)n Simple_repeat Simple_repeat 3 105 0 258 264 28 0 chr1 33002096 33002168 -209662185 + L2 LINE L2 3146 3219 -53 551 234 105 97 chr1 33002509 33002757 -209661596 + MIR SINE MIR 9 258 -4 198 258 10 93 chr1 33003352 33003449 -209660904 - MIR SINE MIR -140 122 34 313 262 43 71 chr1 33003508 33003649 -209660704 - MIR SINE MIR -50 212 76 280 225 99 36 chr1 33004260 33004371 -209659982 - L2 LINE L2 -3 3269 3152 303 176 88 77 chr1 33004603 33004694 -209659659 + MIR SINE MIR 99 190 -72 2089 154 0 10 chr1 33004924 33005235 -209659118 + AluJo SINE Alu 2 309 -3 1197 132 0 0 chr1 33005728 33005895 -209658458 + FRAM SINE Alu 1 165 -11 371 179 115 0 chr1 33005942 33006020 -209658333 - MIR SINE MIR -86 176 90 212 279 0 58 chr1 33006024 33006110 -209658243 - L2 LINE L2 -1 3271 3191 204 109 0 65 chr1 33006358 33006404 -209657949 + (CGGGG)n Simple_repeat Simple_repeat 5 47 0 30 0 0 0 chr1 33006425 33006455 -209657898 + GC_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr1 33006523 33006552 -209657801 + GC_rich Low_complexity Low_complexity 1 29 0 195 129 0 0 chr1 33007083 33007114 -209657239 + (TCCG)n Simple_repeat Simple_repeat 2 32 0 215 235 0 39 chr1 33007451 33007502 -209656851 + C-rich Low_complexity Low_complexity 6 54 0 306 0 0 0 chr1 33007629 33007663 -209656690 + (TG)n Simple_repeat Simple_repeat 1 34 0 189 0 0 0 chr1 33007662 33007683 -209656670 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 195 129 0 0 chr1 33007808 33007839 -209656514 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 279 289 0 chr1 33008046 33008150 -209656203 + MIR SINE MIR 109 242 -20 306 298 133 37 chr1 33008233 33008421 -209655932 - MIR3 SINE MIR 0 208 3 182 243 136 58 chr1 33008580 33008683 -209655670 - MIR SINE MIR -23 239 129 552 225 42 21 chr1 33008766 33008908 -209655445 - MIR SINE MIR -58 204 60 502 248 107 0 chr1 33009249 33009398 -209654955 + MIR SINE MIR 28 192 -70 437 180 20 61 chr1 33009628 33009748 -209654605 - MIR3 SINE MIR -54 154 38 2254 102 3 0 chr1 33009969 33010289 -209654064 - AluSx SINE Alu 0 321 1 309 333 91 40 chr1 33010429 33010681 -209653672 + L2 LINE L2 2592 2856 -458 2883 117 82 21 chr1 33010801 33011114 -209653239 - L1MB3 LINE L1 -7 6176 5818 2413 105 0 6 chr1 33011114 33011428 -209652925 - AluSx SINE Alu 0 312 1 2883 117 82 21 chr1 33011428 33011629 -209652724 - L1MB3 LINE L1 -365 5818 5631 189 0 0 0 chr1 33011636 33011657 -209652696 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2010 135 7 0 chr1 33011660 33011942 -209652411 - AluSx SINE Alu -26 286 3 434 253 156 7 chr1 33012118 33012272 -209652081 + L3 LINE CR1 1391 1567 -10 236 352 93 0 chr1 33012403 33012585 -209651768 - L1ME LINE L1 -200 5921 5723 27 73 0 0 chr1 33012615 33012670 -209651683 + AT_rich Low_complexity Low_complexity 1 55 0 2172 134 0 10 chr1 33012815 33013129 -209651224 + AluJb SINE Alu 1 311 -1 1042 143 0 0 chr1 33013129 33013283 -209651070 + AluJb SINE Alu 134 287 -25 585 264 127 14 chr1 33013901 33014113 -209650240 + MIR SINE MIR 21 256 -6 460 255 10 0 chr1 33014127 33014225 -209650128 + MIR SINE MIR 54 152 -110 2311 136 0 48 chr1 33014260 33014614 -209649739 + MER1B DNA MER1_type 1 337 0 372 317 127 12 chr1 33014943 33015255 -209649098 + L2 LINE L2 2685 3022 -250 24 32 0 0 chr1 33015255 33015286 -209649067 + AT_rich Low_complexity Low_complexity 1 31 0 2367 119 0 0 chr1 33015286 33015597 -209648756 + AluJb SINE Alu 1 311 -1 741 125 0 0 chr1 33015723 33015827 -209648526 - FLAM_C SINE Alu -38 105 2 395 256 178 42 chr1 33015831 33016022 -209648331 + L2 LINE L2 3014 3230 -83 407 315 146 5 chr1 33016405 33016618 -209647735 - L2 LINE L2 -4 3309 3067 460 244 61 0 chr1 33016621 33016736 -209647617 - MIR SINE MIR -74 188 67 214 297 108 0 chr1 33016832 33016906 -209647447 + MIR SINE MIR 33 114 -148 461 296 51 34 chr1 33017591 33017767 -209646586 - MER5A DNA MER1_type -10 179 1 261 269 65 21 chr1 33018382 33018475 -209645878 - MIR SINE MIR -65 143 47 183 207 356 0 chr1 33019008 33019095 -209645258 + L2 LINE L2 3155 3272 0 409 307 124 5 chr1 33020274 33020492 -209643861 + MIR SINE MIR 19 262 0 262 164 55 41 chr1 33020810 33020883 -209643470 - MIR SINE MIR -62 146 73 373 267 0 0 chr1 33020883 33020958 -209643395 - L2 LINE L2 -4 3309 3235 565 176 143 0 chr1 33021026 33021145 -209643208 - MIR SINE MIR -106 156 21 1044 118 0 0 chr1 33021159 33021303 -209643050 - AluSg/x SINE Alu 0 310 167 447 143 0 0 chr1 33021305 33021368 -209642985 - AluS SINE Alu -249 64 2 2203 133 0 13 chr1 33021374 33021682 -209642671 - AluSx SINE Alu -8 304 1 344 227 107 43 chr1 33023131 33023270 -209641083 + MIR SINE MIR 4 152 -64 956 214 11 6 chr1 33023388 33023570 -209640783 + MIR SINE MIR 34 216 -46 1023 165 143 90 chr1 33023573 33023852 -209640501 + AluJo SINE Alu 1 294 -8 475 209 0 12 chr1 33023860 33023946 -209640407 + FRAM/FAM SINE Alu 1 80 -96 529 273 0 37 chr1 33025262 33025423 -209638930 - AluJo SINE Alu -69 243 89 294 315 154 0 chr1 33025423 33025572 -209638781 + L2 LINE L2 3121 3292 -21 2022 146 20 3 chr1 33026025 33026326 -209638027 + AluJo SINE Alu 1 306 -6 239 250 40 0 chr1 33026393 33026469 -209637884 + MER102a DNA MER1_type 252 330 0 354 280 175 20 chr1 33026650 33026850 -209637503 + MIR SINE MIR 1 231 -31 856 169 0 22 chr1 33026992 33027128 -209637225 - FLAM_C SINE Alu 0 133 1 1434 104 9 55 chr1 33027143 33027363 -209636990 - AluSg/x SINE Alu -15 295 86 1419 241 61 64 chr1 33027371 33027865 -209636488 - MER77 LTR ERV1 -5 600 132 665 273 68 23 chr1 33028056 33028294 -209636059 - MIR SINE MIR -11 251 6 207 330 26 52 chr1 33028302 33028337 -209636016 + MIR SINE MIR 19 53 -209 2530 154 96 12 chr1 33028337 33028816 -209635537 - LTR44 LTR ERV1 0 519 1 207 330 26 52 chr1 33028816 33028895 -209635458 + MIR SINE MIR 53 130 -132 336 281 53 76 chr1 33029274 33029445 -209634908 + MIR3 SINE MIR 22 188 -20 309 185 0 0 chr1 33029567 33029632 -209634721 + (CA)n Simple_repeat Simple_repeat 1 65 0 2732 165 15 10 chr1 33029781 33030100 -209634253 - L1MB5 LINE L1 -21 6153 5828 2421 79 0 35 chr1 33030100 33030418 -209633935 - AluY SINE Alu -4 307 1 2732 165 15 10 chr1 33030418 33030620 -209633733 - L1MB5 LINE L1 -346 5828 5629 291 287 43 0 chr1 33031006 33031100 -209633253 + MIR SINE MIR 70 167 -95 217 328 102 32 chr1 33031106 33031292 -209633061 - L2 LINE L2 0 3313 3115 1092 258 72 41 chr1 33031334 33031655 -209632698 - L1MB5 LINE L1 -710 5460 5150 2238 117 0 13 chr1 33031655 33031982 -209632371 - AluSq SINE Alu 0 313 3 1092 258 72 41 chr1 33031982 33032284 -209632069 - L1MB5 LINE L1 -1020 5150 4809 397 271 172 27 chr1 33032284 33032546 -209631807 - L2 LINE L2 -563 2751 2452 245 254 0 14 chr1 33032847 33032918 -209631435 - MLT1L LTR MaLR 0 615 546 239 302 87 40 chr1 33033437 33033491 -209630862 + L2 LINE L2 3137 3187 -85 1807 133 73 28 chr1 33033491 33033777 -209630576 - AluSx SINE Alu -13 299 1 239 302 87 40 chr1 33033777 33033848 -209630505 + L2 LINE L2 3187 3268 -4 567 302 19 23 chr1 33033880 33034095 -209630258 - MLT1L LTR MaLR 0 615 402 466 276 21 14 chr1 33034178 33034323 -209630030 - MIR SINE MIR 0 262 117 8723 163 15 6 chr1 33034482 33036008 -209628345 - L1PB1 LINE L1 -1 6150 4587 2628 59 0 7 chr1 33036008 33036315 -209628038 + AluY SINE Alu 1 305 -6 8723 163 15 6 chr1 33036315 33037463 -209626890 - L1PB1 LINE L1 -1564 4587 3451 2887 135 22 77 chr1 33037473 33038060 -209626293 - LTR10A LTR ERV1 -54 555 1 12363 208 38 56 chr1 33038061 33041069 -209623284 - LTR10A-int LTR ERV1 -3 6646 3694 4706 84 25 1 chr1 33041047 33041774 -209622579 - LTR10A-int LTR ERV1 -4320 2576 1833 * 296 226 151 32 chr1 33041779 33041872 -209622481 + LTR8 LTR ERV1 150 253 -438 3291 102 45 58 chr1 33041907 33042527 -209621826 + LTR10E LTR ERV1 1 612 -21 27841 243 36 36 chr1 33042554 33042996 -209621357 + HERVI LTR ERV1 26 467 -7318 231 61 0 0 chr1 33042996 33043029 -209621324 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 2338 98 0 0 chr1 33043033 33043329 -209621024 - AluY SINE Alu -15 296 1 27841 243 36 36 chr1 33043329 33050640 -209613713 + HERVI LTR ERV1 469 7784 -1 3473 102 30 42 chr1 33050643 33051278 -209613075 + LTR10E LTR ERV1 1 627 -6 3951 177 16 36 chr1 33051313 33052172 -209612181 - LTR10A-int LTR ERV1 -3095 4112 3237 2472 83 0 0 chr1 33052172 33052474 -209611879 - AluY SINE Alu -9 302 1 3951 177 16 36 chr1 33052474 33052743 -209611610 - LTR10A-int LTR ERV1 -3970 3237 953 2303 174 69 63 chr1 33052723 33053008 -209611345 - LTR10A-int LTR ERV1 -3957 2692 2597 * 2349 99 0 0 chr1 33053008 33053301 -209611052 - AluY SINE Alu -18 293 1 2303 174 69 63 chr1 33053301 33053696 -209610657 - LTR10A-int LTR ERV1 -4052 2597 2206 295 202 36 0 chr1 33053694 33053778 -209610575 - LTR10A-int LTR ERV1 -4705 1944 1858 * 375 185 0 0 chr1 33053780 33053872 -209610481 + CT-rich Low_complexity Low_complexity 2 93 0 4156 94 6 22 chr1 33053916 33054561 -209609792 - LTR10A-int LTR ERV1 -4783 1866 1234 2205 122 31 6 chr1 33054543 33054903 -209609450 - LTR10A-int LTR ERV1 -5628 1021 653 * 1010 234 62 4 chr1 33055034 33055307 -209609046 - LTR10A-int LTR ERV1 -6360 289 1 * 2768 139 26 65 chr1 33055303 33055892 -209608461 - LTR10A LTR ERV1 0 609 1 9028 151 44 5 chr1 33055892 33056358 -209607995 - L1PBa LINE L1 -2691 4171 3725 2646 98 0 8 chr1 33056358 33056716 -209607637 - THE1A LTR MaLR 0 355 1 11521 105 14 1 chr1 33056716 33058276 -209606077 - THE1A-int LTR MaLR 0 1580 1 2537 75 31 39 chr1 33058276 33058317 -209606036 - THE1A LTR MaLR 0 355 315 2232 125 0 3 chr1 33058317 33058620 -209605733 + AluSg SINE Alu 1 302 -8 2537 75 31 39 chr1 33058620 33058936 -209605417 - THE1A LTR MaLR -40 315 1 9028 151 44 5 chr1 33058936 33061212 -209603141 - L1PBa LINE L1 -3136 3726 1321 5014 190 92 6 chr1 33061220 33062286 -209602067 - L1PBa LINE L1 -5700 1163 6 300 325 81 51 chr1 33062301 33062498 -209601855 - L2 LINE L2 -11 3302 3100 28 0 0 0 chr1 33062498 33062526 -209601827 + AT_rich Low_complexity Low_complexity 1 28 0 366 214 19 39 chr1 33062548 33062651 -209601702 - Charlie4 DNA MER1_type 0 1961 1861 771 193 0 0 chr1 33062668 33062787 -209601566 - FLAM_C SINE Alu -14 119 1 1475 128 5 0 chr1 33062935 33063139 -209601214 + AluSg/x SINE Alu 85 289 -21 389 280 24 43 chr1 33063139 33063350 -209601003 - Charlie4 DNA MER1_type -110 1851 1645 840 237 18 9 chr1 33063565 33063789 -209600564 - Charlie4 DNA MER1_type -1729 232 7 399 219 0 0 chr1 33063980 33064062 -209600291 - MER81 DNA DNA -32 82 1 227 302 72 7 chr1 33064149 33064288 -209600065 + L1M4 LINE L1 2475 2622 -3524 3843 90 0 25 chr1 33064330 33064854 -209599499 + MER9 LTR ERVK 1 511 0 1038 87 0 0 chr1 33064883 33065010 -209599343 + AluSg SINE Alu 5 131 -179 270 264 160 28 chr1 33065086 33065230 -209599123 + L1ME2 LINE L1 5563 5725 -2083 687 189 0 0 chr1 33065275 33065381 -209598972 + FLAM_A SINE Alu 1 106 -36 439 148 23 0 chr1 33065401 33065489 -209598864 + GA-rich Low_complexity Low_complexity 1 90 0 1150 211 34 49 chr1 33065489 33065896 -209598457 + L1M4 LINE L1 2271 2671 -3475 1333 147 0 92 chr1 33065914 33066220 -209598133 + Tigger2a DNA MER2_type 2 279 -155 243 302 32 21 chr1 33066221 33066410 -209597943 + L1ME2 LINE L1 5762 5952 -212 217 280 61 11 chr1 33066677 33066764 -209597589 + MIR SINE MIR 79 144 -64 3979 45 38 0 chr1 33066842 33067314 -209597039 - LTR2B LTR ERV1 0 490 1 721 160 0 0 chr1 33068264 33068389 -209595964 - L1MB3 LINE L1 -2 6181 6057 2381 84 0 3 chr1 33068389 33068686 -209595667 - AluY SINE Alu -15 296 1 1113 139 37 74 chr1 33068808 33069023 -209595330 + AluSq SINE Alu 97 303 -10 336 335 62 11 chr1 33069023 33069283 -209595070 - L1MC4 LINE L1 -155 7887 7615 246 300 36 27 chr1 33069372 33069482 -209594871 - L1MC5 LINE L1 -582 7379 7269 2120 119 80 14 chr1 33070188 33070540 -209593813 + THE1C LTR MaLR 1 375 0 2218 114 7 0 chr1 33070615 33070904 -209593449 + AluSx SINE Alu 1 291 -21 1036 181 12 0 chr1 33071169 33071340 -209593013 + AluSg/x SINE Alu 135 307 -3 1895 98 0 0 chr1 33073564 33073819 -209590534 + THE1B LTR MaLR 1 255 -109 1897 58 12 0 chr1 33073819 33074076 -209590277 - L1PA8A LINE L1 -572 5559 5300 * 5659 98 5 9 chr1 33074073 33075082 -209589271 - L1MA2 LINE L1 -245 6059 5053 1151 143 0 0 chr1 33075157 33075325 -209589028 - AluSg/x SINE Alu -10 300 133 1062 260 64 12 chr1 33075391 33075718 -209588635 - MLT1I LTR MaLR 0 409 66 606 234 51 17 chr1 33075832 33076007 -209588346 + MLT1I LTR MaLR 221 401 -8 200 228 49 81 chr1 33076342 33076438 -209587915 + MIR SINE MIR 78 171 -91 4040 82 0 4 chr1 33076438 33076951 -209587402 - MER9 LTR ERVK 0 511 1 200 228 49 81 chr1 33076951 33076977 -209587376 + MIR SINE MIR 171 196 -66 * 584 219 70 53 chr1 33076976 33077163 -209587190 + MIR SINE MIR 8 197 -65 369 217 33 50 chr1 33077743 33077863 -209586490 - MIR SINE MIR -48 214 97 181 256 279 12 chr1 33077922 33078008 -209586345 - MIR SINE MIR -67 141 33 355 77 0 0 chr1 33078155 33078207 -209586146 - Alu SINE Alu -1 300 249 722 253 16 46 chr1 33078618 33078858 -209585495 - MIR SINE MIR 0 262 30 265 324 53 48 chr1 33081389 33081596 -209582757 + MIR SINE MIR 14 221 -41 224 299 67 36 chr1 33081949 33082143 -209582210 - L2 LINE L2 -390 2924 2725 2179 91 6 69 chr1 33082532 33082852 -209581501 - AluSx SINE Alu -12 300 1 295 242 38 23 chr1 33083291 33083423 -209580930 + CT-rich Low_complexity Low_complexity 5 138 0 294 292 10 10 chr1 33083959 33084055 -209580298 + MLT1L LTR MaLR 355 450 -165 1908 114 7 39 chr1 33084122 33084239 -209580114 + AluJb SINE Alu 18 137 -175 2369 101 7 0 chr1 33084239 33084545 -209579808 + AluSg SINE Alu 1 308 -2 2269 73 7 0 chr1 33084549 33084823 -209579530 + AluY SINE Alu 19 294 -17 1908 114 7 39 chr1 33084823 33084980 -209579373 + AluJb SINE Alu 140 288 -24 332 264 74 43 chr1 33084980 33085143 -209579210 + MLT1L LTR MaLR 446 613 -2 214 219 62 0 chr1 33085261 33085325 -209579028 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 12916 35 0 0 chr1 33085936 33088077 -209576276 - L1PA5 LINE L1 -222 5932 3791 936 37 0 0 chr1 33088078 33088185 -209576168 - U6 snRNA snRNA 0 107 1 1530 175 14 18 chr1 33088195 33088475 -209575878 - L1MB7 LINE L1 0 6184 5906 24 32 0 0 chr1 33088476 33088507 -209575846 + AT_rich Low_complexity Low_complexity 1 31 0 262 302 75 28 chr1 33088772 33088815 -209575538 - L2 LINE L2 0 3272 3232 1968 118 16 33 chr1 33088815 33089120 -209575233 - AluJb SINE Alu -12 300 1 262 302 75 28 chr1 33089120 33089182 -209575171 - L2 LINE L2 -40 3232 3162 216 286 19 9 chr1 33089723 33089828 -209574525 + (TG)n Simple_repeat Simple_repeat 1 106 0 995 262 119 29 chr1 33089830 33090216 -209574137 - LTR16C LTR ERVL 0 491 71 361 293 40 13 chr1 33090509 33090659 -209573694 + MIR SINE MIR 96 249 -13 277 238 0 24 chr1 33091616 33091700 -209572653 + (TG)n Simple_repeat Simple_repeat 1 82 0 584 230 39 146 chr1 33091757 33092087 -209572266 + MER102a DNA MER1_type 36 330 0 378 111 74 19 chr1 33093066 33093174 -209571179 + T-rich Low_complexity Low_complexity 5 118 0 2035 151 0 3 chr1 33093194 33093493 -209570860 - AluJb SINE Alu -6 306 9 510 240 60 60 chr1 33093821 33094021 -209570332 + MIR SINE MIR 2 201 -61 456 269 10 0 chr1 33094517 33094621 -209569732 - MER81 DNA DNA -1 113 9 1017 130 113 113 chr1 33095168 33095452 -209568901 - LTR10A LTR ERV1 -318 291 8 419 176 0 55 chr1 33095457 33095548 -209568805 + FLAM_C SINE Alu 53 138 -5 593 268 132 4 chr1 33095550 33095778 -209568575 - MLT1C LTR MaLR -57 410 154 282 322 16 8 chr1 33095940 33096061 -209568292 + L2 LINE L2 2222 2343 -971 2241 120 7 0 chr1 33096460 33096759 -209567594 - AluSx SINE Alu -11 301 1 4746 108 49 9 chr1 33096860 33097609 -209566744 - MER52C LTR ERV1 0 1278 500 393 235 11 95 chr1 33097931 33098110 -209566243 + MER69A DNA AcHobo 1 164 -13 228 250 138 0 chr1 33098282 33098362 -209565991 + MIR SINE MIR 63 153 -109 2465 155 30 128 chr1 33099074 33099121 -209565232 + Tigger1 DNA MER2_type 1 51 -2367 224 29 0 29 chr1 33099121 33099155 -209565198 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2465 155 30 128 chr1 33099155 33099352 -209565001 + Tigger1 DNA MER2_type 51 266 -2152 393 22 0 0 chr1 33099352 33099398 -209564955 + (TTTCC)n Simple_repeat Simple_repeat 3 48 0 1619 167 11 39 chr1 33099402 33099684 -209564669 - AluSx SINE Alu -38 274 1 2465 155 30 128 chr1 33099684 33100091 -209564262 + Tigger1 DNA MER2_type 269 594 -1824 627 272 99 5 chr1 33100092 33100283 -209564070 - MIR SINE MIR -46 216 8 352 267 35 0 chr1 33100290 33100376 -209563977 + MIR SINE MIR 79 167 -95 2998 96 2 5 chr1 33100686 33101105 -209563248 - LTR1 LTR ERV1 0 785 368 4946 61 2 0 chr1 33101105 33101742 -209562611 + HERVL-A1 LTR ERVL 5017 5654 0 3190 61 21 7 chr1 33101746 33102173 -209562180 + MLT2A1 LTR ERVL 5 437 -7 2052 150 0 0 chr1 33102275 33102569 -209561784 - AluSx SINE Alu -18 294 1 247 321 28 18 chr1 33102726 33102835 -209561518 - L1MC4a LINE L1 -455 7353 7244 * 848 232 59 29 chr1 33102832 33103125 -209561228 - L1MC4 LINE L1 -727 7234 6957 507 272 121 27 chr1 33103154 33103378 -209560975 + MLT1J2 LTR MaLR 202 446 -4 2228 115 3 13 chr1 33103396 33103710 -209560643 - AluSq SINE Alu -2 311 1 373 218 64 32 chr1 33103711 33103899 -209560454 - HAL1 LINE L1 -1426 1081 888 2162 108 0 4 chr1 33104586 33104904 -209559449 + AluSc SINE Alu 1 317 0 24 0 0 0 chr1 33105038 33105062 -209559291 + AT_rich Low_complexity Low_complexity 1 24 0 2018 119 18 0 chr1 33105077 33105354 -209558999 - AluSx SINE Alu -30 282 1 191 231 141 13 chr1 33105793 33105871 -209558482 + L2 LINE L2 3225 3312 -1 199 219 14 137 chr1 33106718 33106745 -209557608 + MIR SINE MIR 84 113 -95 2055 130 7 3 chr1 33106745 33107045 -209557308 - AluSx SINE Alu -11 301 1 199 219 14 137 chr1 33107045 33107090 -209557263 + MIR SINE MIR 113 147 -61 190 234 0 0 chr1 33107389 33107436 -209556917 + MIR SINE MIR 67 113 -149 2042 122 7 0 chr1 33107891 33108178 -209556175 + AluSx SINE Alu 1 289 -23 618 112 0 56 chr1 33108184 33108291 -209556062 + AluSg/x SINE Alu 210 310 0 1408 217 59 48 chr1 33108318 33108756 -209555597 - LTR47B LTR ERVL 0 443 1 2434 80 7 0 chr1 33109542 33109843 -209554510 + AluSq SINE Alu 1 303 -10 1339 154 0 14 chr1 33110697 33110911 -209553442 - AluJb SINE Alu -15 297 87 2581 126 0 3 chr1 33111162 33111526 -209552827 - THE1B LTR MaLR 0 364 2 1781 140 64 39 chr1 33112229 33112586 -209551767 - THE1C LTR MaLR -9 366 1 562 316 67 72 chr1 33113183 33114018 -209550335 - LTR23-int LTR ERV1 -1726 2921 2091 773 302 79 47 chr1 33115740 33116184 -209548169 - LTR23-int LTR ERV1 -4063 584 127 769 60 0 0 chr1 33116449 33116549 -209547804 - AluY SINE Alu 0 311 212 234 0 0 0 chr1 33117567 33117593 -209546760 + (T)n Simple_repeat Simple_repeat 1 26 0 2445 58 0 10 chr1 33117825 33118136 -209546217 + AluY SINE Alu 1 308 -3 1755 150 0 40 chr1 33118690 33118990 -209545363 + AluJo SINE Alu 5 292 -20 1356 104 152 4 chr1 33119322 33119552 -209544801 - AluSg1 SINE Alu -45 264 1 256 257 0 50 chr1 33119927 33120028 -209544325 - LTR23 LTR ERV1 0 437 342 1235 136 6 0 chr1 33120174 33120372 -209543981 + AluSc SINE Alu 103 301 0 1026 193 5 0 chr1 33120375 33120562 -209543791 - L1M4 LINE L1 -1044 5102 4915 2561 133 31 12 chr1 33121039 33121454 -209542899 - MSTB LTR MaLR 0 426 4 469 262 55 20 chr1 33121739 33121941 -209542412 + L2 LINE L2 2850 3058 -214 10958 112 14 5 chr1 33122211 33123789 -209540564 - Tigger1 DNA MER2_type -645 1773 182 1901 118 85 0 chr1 33123797 33124068 -209540285 - AluSx SINE Alu -18 294 1 346 213 205 8 chr1 33124390 33124512 -209539841 + MIR SINE MIR 55 200 -62 996 119 0 0 chr1 33125381 33125558 -209538795 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 1189 143 0 0 chr1 33125673 33125848 -209538505 + AluY SINE Alu 120 294 -17 596 282 169 9 chr1 33125848 33126274 -209538079 - L2 LINE L2 -1688 1626 1133 191 250 23 0 chr1 33126463 33126507 -209537846 - MIR SINE MIR -117 91 47 251 214 258 44 chr1 33126861 33127225 -209537128 - L2 LINE L2 -1 3312 2871 1739 188 56 28 chr1 33127420 33127888 -209536465 - MER99 DNA DNA -102 726 197 1216 159 18 14 chr1 33127924 33128144 -209536209 + AluJo SINE Alu 87 307 -5 2310 110 0 0 chr1 33128402 33128702 -209535651 + AluSq SINE Alu 1 300 -13 26 30 0 0 chr1 33128861 33128894 -209535459 + AT_rich Low_complexity Low_complexity 1 33 0 2037 154 7 0 chr1 33179087 33179392 -209484961 + AluSx SINE Alu 1 307 -5 518 227 110 32 chr1 33179670 33179824 -209484529 + MIR SINE MIR 78 243 -19 393 262 27 54 chr1 33180049 33180198 -209484155 - MIR3 SINE MIR -58 150 6 706 305 17 30 chr1 33181198 33181434 -209482919 - MIR SINE MIR 0 262 30 1412 233 127 37 chr1 33181655 33182118 -209482235 - MLT1D LTR MaLR 0 505 1 395 299 19 9 chr1 33182939 33183082 -209481271 + MIR SINE MIR 17 160 -51 994 301 59 44 chr1 33183129 33183669 -209480684 + L2 LINE L2 2622 3183 -130 1734 190 0 3 chr1 33183669 33183988 -209480365 - AluSx SINE Alu 0 318 1 994 301 59 44 chr1 33183988 33184119 -209480234 + L2 LINE L2 3183 3311 -2 243 282 82 12 chr1 33184646 33184731 -209479622 + MIR3 SINE MIR 81 171 -37 2330 83 7 17 chr1 33184951 33185252 -209479101 + AluY SINE Alu 1 298 -13 235 254 14 65 chr1 33185473 33185611 -209478742 + (CAGA)n Simple_repeat Simple_repeat 4 134 0 437 245 16 43 chr1 33185622 33185806 -209478547 + (CAGA)n Simple_repeat Simple_repeat 1 179 0 1849 149 0 14 chr1 33185813 33186095 -209478258 + AluJb SINE Alu 35 312 0 207 245 94 0 chr1 33186536 33186589 -209477764 + MIR SINE MIR 78 135 -73 222 247 31 31 chr1 33187942 33188039 -209476314 + (CAGAGA)n Simple_repeat Simple_repeat 4 100 0 1714 110 4 8 chr1 33189134 33189370 -209474983 + AluSx SINE Alu 1 235 -77 6018 57 3 5 chr1 33189370 33190127 -209474226 + L1PA8 LINE L1 5418 6172 0 682 312 24 28 chr1 33190201 33190454 -209473899 + L1MC4a LINE L1 5351 5602 -2206 1607 217 100 43 chr1 33190460 33191082 -209473271 + MLT1E3 LTR MaLR 2 624 0 1848 154 32 7 chr1 33191095 33191380 -209472973 + AluJb SINE Alu 2 293 -19 648 230 38 70 chr1 33191382 33191669 -209472684 + L1MC4a LINE L1 5609 5886 -1922 2094 121 0 0 chr1 33191674 33191954 -209472399 + AluSx SINE Alu 1 280 -32 224 30 30 0 chr1 33191957 33191990 -209472363 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 287 0 53 0 chr1 33192173 33192211 -209472142 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1984 66 0 4 chr1 33192217 33192459 -209471894 - AluSc SINE Alu -38 271 31 423 229 124 49 chr1 33192469 33192775 -209471578 + L1 LINE L1 2973 3301 -2845 2080 132 0 0 chr1 33192784 33193072 -209471281 + AluSx SINE Alu 7 294 -18 322 247 238 8 chr1 33193087 33193254 -209471099 + L1 LINE L1 3252 3379 -2767 2148 124 7 0 chr1 33193254 33193552 -209470801 + AluSx SINE Alu 6 305 -7 2101 112 54 0 chr1 33193556 33193850 -209470503 + AluSg SINE Alu 1 310 0 322 247 238 8 chr1 33193850 33193869 -209470484 + L1 LINE L1 3381 3483 -2663 593 300 74 19 chr1 33193870 33194140 -209470213 - L1MEc LINE L1 -2786 3343 3059 1073 196 81 50 chr1 33194140 33194461 -209469892 - L1ME3 LINE L1 -102 6060 5730 667 297 82 9 chr1 33194447 33194790 -209469563 - L1MEc LINE L1 -3257 2872 2505 * 311 242 164 8 chr1 33194791 33194919 -209469434 - L1MEc LINE L1 -4138 2172 2025 303 172 101 30 chr1 33195242 33195341 -209469012 - L1MEc LINE L1 -5045 1074 969 300 53 0 0 chr1 33195350 33195388 -209468965 + (TA)n Simple_repeat Simple_repeat 2 39 0 2133 120 10 0 chr1 33195388 33195679 -209468674 - AluSx SINE Alu -18 294 1 339 319 57 57 chr1 33195685 33195914 -209468439 - L1ME3 LINE L1 0 6162 5934 625 263 17 12 chr1 33195942 33196182 -209468171 - L1ME3 LINE L1 -216 5954 5714 2121 113 0 29 chr1 33196305 33196615 -209467738 - AluJo SINE Alu -11 301 1 411 221 36 46 chr1 33196626 33196821 -209467532 - L1MEc LINE L1 -5221 898 706 * 690 305 60 45 chr1 33196815 33197323 -209467030 - L1ME3 LINE L1 -1163 4983 4463 2281 117 0 0 chr1 33197323 33197623 -209466730 + AluSx SINE Alu 1 300 -12 690 305 60 45 chr1 33197623 33197731 -209466622 - L1ME3 LINE L1 -1683 4463 4358 2637 132 71 20 chr1 33197737 33198245 -209466108 - Tigger3(Golem) DNA MER2_type -9 3020 2487 414 136 0 0 chr1 33198245 33198304 -209466049 + AluJ/FLAM SINE Alu 2 60 -252 1010 213 8 50 chr1 33198319 33198558 -209465795 - LTR40a LTR ERVL -52 467 239 646 147 26 9 chr1 33198573 33198689 -209465664 + MER65B LTR ERV1 1 118 -413 1013 186 0 0 chr1 33198691 33198863 -209465490 + AluJb SINE Alu 132 303 -9 1703 128 95 0 chr1 33198864 33199168 -209465185 + MER65A LTR ERV1 113 445 0 658 243 74 11 chr1 33199171 33199360 -209464993 - LTR40a LTR ERVL -318 201 1 291 294 0 28 chr1 33199360 33199469 -209464884 - L1ME3 LINE L1 -1861 4285 4180 2040 146 3 10 chr1 33199483 33199784 -209464569 - AluSx SINE Alu -9 303 5 1910 167 42 31 chr1 33200188 33200532 -209463821 + L1 LINE L1 4921 5273 -873 2082 117 10 10 chr1 33200532 33200840 -209463513 + AluSx SINE Alu 1 308 -4 1910 167 42 31 chr1 33200840 33200973 -209463380 + L1 LINE L1 5273 5403 -743 663 187 64 2 chr1 33200997 33201191 -209463162 - MLT2B1 LTR ERVL -258 195 4 1712 144 27 27 chr1 33201428 33201720 -209462633 + AluJo SINE Alu 15 306 -6 255 263 0 75 chr1 33201955 33202035 -209462318 - L2 LINE L2 0 3313 3240 22 0 0 0 chr1 33202839 33202861 -209461492 + AT_rich Low_complexity Low_complexity 1 22 0 2273 99 3 26 chr1 33202865 33203169 -209461184 + AluSx SINE Alu 1 297 -15 434 292 60 46 chr1 33203470 33203785 -209460568 + L2 LINE L2 2850 3241 -31 743 212 0 15 chr1 33205841 33205973 -209458380 - FLAM_A SINE Alu 0 133 4 204 218 0 18 chr1 33206096 33206151 -209458202 + (CAA)n Simple_repeat Simple_repeat 2 55 0 498 281 168 0 chr1 33206602 33206803 -209457550 - MIR SINE MIR -9 253 20 263 287 30 20 chr1 33206842 33206943 -209457410 - MIR SINE MIR -91 117 16 240 237 69 114 chr1 33206935 33207066 -209457287 + L2 LINE L2 3141 3265 -7 * 276 30 0 0 chr1 33207320 33207353 -209457000 + (CA)n Simple_repeat Simple_repeat 2 34 0 287 342 26 8 chr1 33207805 33207922 -209456431 + L2 LINE L2 2686 2804 -510 744 81 0 0 chr1 33208545 33208644 -209455709 - AluSg/x SINE Alu 0 310 212 362 330 157 8 chr1 33209094 33209564 -209454789 + L2 LINE L2 2509 3083 -189 189 171 0 0 chr1 33210338 33210373 -209453980 + (TTA)n Simple_repeat Simple_repeat 2 36 0 250 336 44 35 chr1 33210867 33210980 -209453373 + L2 LINE L2 3159 3272 0 195 267 60 60 chr1 33211269 33211419 -209452934 + MIR3 SINE MIR 22 171 -37 * 785 315 30 4 chr1 33211404 33211639 -209452714 + MIR SINE MIR 9 249 -13 195 42 0 0 chr1 33213525 33213549 -209450804 + (T)n Simple_repeat Simple_repeat 1 24 0 307 232 36 94 chr1 33213760 33213898 -209450455 + L2 LINE L2 2384 2513 -801 219 239 0 0 chr1 33213903 33213949 -209450404 + L2 LINE L2 3266 3311 -2 288 310 9 26 chr1 33215395 33215508 -209448845 + MIR3 SINE MIR 55 165 -43 191 146 24 0 chr1 33216071 33216112 -209448241 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr1 33216242 33216265 -209448088 + GC_rich Low_complexity Low_complexity 1 23 0 219 314 67 19 chr1 33216329 33216434 -209447919 + MIR SINE MIR 31 140 -68 347 311 54 75 chr1 33216725 33217005 -209447348 - L2 LINE L2 -93 3179 2906 281 143 36 0 chr1 33217719 33217775 -209446578 + G-rich Low_complexity Low_complexity 3 60 0 291 283 35 13 chr1 33217855 33217951 -209446402 + MIR SINE MIR 48 145 -63 405 311 76 54 chr1 33219811 33220181 -209444172 + L2 LINE L2 2600 2977 -337 388 345 132 15 chr1 33220253 33220578 -209443775 + L2 LINE L2 2951 3313 0 253 248 0 124 chr1 33220694 33220799 -209443554 + MIR SINE MIR 45 136 -72 235 275 22 22 chr1 33223897 33223988 -209440365 + GA-rich Low_complexity Low_complexity 4 94 0 216 322 0 11 chr1 33224590 33224680 -209439673 - L3b LINE CR1 -347 1236 1148 874 233 63 111 chr1 33225397 33225921 -209438432 - L2 LINE L2 0 3313 2815 291 260 13 13 chr1 33226924 33227001 -209437352 - Charlie4 DNA MER1_type -1 1960 1884 325 297 151 26 chr1 33227136 33227370 -209436983 - MIR SINE MIR 0 262 5 680 286 173 17 chr1 33227489 33227905 -209436448 + L3 LINE CR1 786 1266 -311 247 271 17 0 chr1 33228377 33228436 -209435917 - L2 LINE L2 -3 3269 3210 1809 164 30 7 chr1 33229222 33229527 -209434826 - AluJo SINE Alu 0 312 1 440 261 35 70 chr1 33229527 33229617 -209434736 - MIR SINE MIR -64 198 106 2075 137 0 0 chr1 33229617 33229916 -209434437 + AluSx SINE Alu 5 303 -9 440 261 35 70 chr1 33229916 33230024 -209434329 - MIR SINE MIR -156 106 7 226 247 0 82 chr1 33230112 33230197 -209434156 + MIR SINE MIR 73 150 -112 183 213 0 43 chr1 33230579 33230626 -209433727 + L2 LINE L2 3195 3239 -33 2076 98 11 11 chr1 33230645 33230965 -209433388 - AluSx SINE Alu 0 320 1 322 275 82 4 chr1 33231121 33231237 -209433116 + MIR SINE MIR 46 170 -38 467 317 17 39 chr1 33232030 33232210 -209432143 + MIR SINE MIR 61 236 -26 866 238 73 5 chr1 33232264 33232470 -209431883 - MIR SINE MIR -39 223 4 952 257 160 28 chr1 33232471 33232895 -209431458 + L2 LINE L2 2834 3313 0 604 313 92 5 chr1 33233746 33233963 -209430390 + MIR SINE MIR 20 255 -7 226 414 51 0 chr1 33234816 33234973 -209429380 - MIR SINE MIR -7 255 91 201 276 35 17 chr1 33235110 33235168 -209429185 - MIR SINE MIR -133 129 71 220 289 40 81 chr1 33235416 33235565 -209428788 + MIR3 SINE MIR 33 175 -33 988 179 111 11 chr1 33235917 33236107 -209428246 - MER3 DNA MER1_type 0 209 1 404 256 131 7 chr1 33236190 33236327 -209428026 + MIR SINE MIR 109 262 0 279 224 45 15 chr1 33238484 33238551 -209425802 - L2 LINE L2 -39 3274 3206 562 284 34 64 chr1 33238555 33238791 -209425562 + MIR SINE MIR 34 262 0 424 256 74 8 chr1 33238901 33239022 -209425331 - MIR3 SINE MIR -78 130 2 200 356 22 0 chr1 33239964 33240054 -209424299 - MIR SINE MIR -84 124 33 379 345 104 66 chr1 33240115 33240674 -209423679 - L2 LINE L2 -3 3310 2774 2283 103 0 0 chr1 33240674 33240975 -209423378 + AluSx SINE Alu 1 301 -11 216 67 0 0 chr1 33240981 33241011 -209423342 + (CA)n Simple_repeat Simple_repeat 2 31 0 379 345 104 66 chr1 33241011 33241331 -209423022 - L2 LINE L2 -543 2770 2365 895 253 64 0 chr1 33241545 33241778 -209422575 + MIR SINE MIR 14 261 -1 223 339 54 33 chr1 33243655 33243793 -209420560 - MIR SINE MIR -71 137 14 387 265 82 0 chr1 33247089 33247187 -209417166 + MIR SINE MIR 38 143 -119 276 329 70 35 chr1 33247398 33247541 -209416812 + MIR SINE MIR 113 260 -2 271 225 171 9 chr1 33247780 33247891 -209416462 - MIR3 SINE MIR -70 138 10 428 257 29 14 chr1 33248964 33249104 -209415249 - MIR3 SINE MIR -47 161 20 427 340 50 22 chr1 33251088 33251436 -209412917 - L2 LINE L2 -235 3037 2684 187 292 31 0 chr1 33251826 33251891 -209412462 - MIR SINE MIR -63 145 79 338 230 31 152 chr1 33252305 33252386 -209411967 - L2 LINE L2 0 3272 3223 2218 89 0 3 chr1 33252386 33252712 -209411641 + AluSx SINE Alu 1 325 0 338 230 31 152 chr1 33252712 33252819 -209411534 - L2 LINE L2 -49 3223 3105 207 204 0 0 chr1 33253049 33253093 -209411260 + (CA)n Simple_repeat Simple_repeat 1 44 0 265 252 26 87 chr1 33253877 33253992 -209410361 - MIR SINE MIR -70 138 31 329 270 119 27 chr1 33257228 33257375 -209406978 - MIR3 SINE MIR 0 208 48 537 319 59 15 chr1 33258243 33258447 -209405906 + MIR SINE MIR 50 262 0 708 291 89 5 chr1 33259145 33259358 -209404995 - MIR SINE MIR -30 232 2 219 319 126 22 chr1 33260545 33260727 -209403626 + L2 LINE L2 2368 2568 -746 347 225 23 112 chr1 33260924 33261182 -209403171 + L1MEd LINE L1 797 1031 -5088 1749 165 0 26 chr1 33261226 33261529 -209402824 + AluJo SINE Alu 17 311 -1 394 241 75 8 chr1 33261756 33261885 -209402468 - MIR SINE MIR -58 150 58 349 206 78 71 chr1 33262684 33262825 -209401528 + MIR3 SINE MIR 58 199 -9 298 345 100 22 chr1 33262817 33263204 -209401149 + L2 LINE L2 2593 3099 -173 * 276 296 9 78 chr1 33263341 33263456 -209400897 + MIR SINE MIR 106 212 -50 1049 197 69 26 chr1 33263691 33263996 -209400357 - MER33 DNA MER1_type -6 318 1 235 287 163 31 chr1 33264016 33264145 -209400208 + MIR SINE MIR 85 230 -32 915 287 112 47 chr1 33264682 33265094 -209399259 - L2 LINE L2 -521 2793 2331 1854 158 135 20 chr1 33265094 33265449 -209398904 - MSTD LTR MaLR 0 396 1 915 287 112 47 chr1 33265449 33265617 -209398736 - L2 LINE L2 -983 2331 2175 407 257 30 0 chr1 33266954 33267055 -209397298 + MIR SINE MIR 32 135 -127 2253 81 54 0 chr1 33267429 33267726 -209396627 + AluSq SINE Alu 1 313 0 786 296 137 19 chr1 33268118 33268630 -209395723 + L2 LINE L2 2743 3313 0 422 284 47 16 chr1 33269127 33269254 -209395099 - MIR3 SINE MIR -29 179 49 590 312 195 14 chr1 33269258 33269742 -209394611 - L2 LINE L2 -11 3261 2682 365 273 12 91 chr1 33269755 33269920 -209394433 - L2 LINE L2 -8 3264 3113 211 258 101 90 chr1 33270633 33270811 -209393542 - L2 LINE L2 -144 3128 2949 2501 62 0 0 chr1 33271012 33271320 -209393033 + AluY SINE Alu 1 308 -3 199 309 71 0 chr1 33273064 33273148 -209391205 - MIR3 SINE MIR -34 174 85 2032 114 17 7 chr1 33273305 33273595 -209390758 - AluSx SINE Alu -19 293 1 668 263 74 14 chr1 33274414 33274644 -209389709 - MIR SINE MIR -1 261 18 200 285 200 8 chr1 33274975 33275105 -209389248 - L2 LINE L2 -1 3312 3158 782 264 29 54 chr1 33275350 33275589 -209388764 - MIR SINE MIR -22 240 8 1918 162 0 10 chr1 33275604 33275907 -209388446 - AluJb SINE Alu -12 300 1 263 254 0 0 chr1 33275919 33275978 -209388375 - MIR SINE MIR -124 138 80 446 283 150 17 chr1 33276404 33276584 -209387769 - MIR SINE MIR -10 252 49 715 130 176 0 chr1 33276615 33276746 -209387607 + MER5A DNA MER1_type 1 154 -35 2205 104 27 0 chr1 33276877 33277176 -209387177 - AluSx SINE Alu -5 307 1 1240 178 23 0 chr1 33277181 33277395 -209386958 - MER20 DNA MER1_type 0 219 1 2303 103 6 0 chr1 33277416 33277727 -209386626 - AluSq SINE Alu 0 313 1 214 253 165 13 chr1 33277806 33277885 -209386468 - MIR3 SINE MIR -111 97 7 289 192 23 69 chr1 33278315 33278445 -209385908 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 301 354 113 14 chr1 33278452 33278664 -209385689 + L1MEd LINE L1 979 1211 -4908 510 339 90 28 chr1 33278908 33279065 -209385288 - L2 LINE L2 -3 3310 3164 1914 150 0 3 chr1 33279065 33279365 -209384988 + AluJo SINE Alu 1 299 -13 510 339 90 28 chr1 33279365 33279726 -209384627 - L2 LINE L2 -149 3164 2755 2149 125 6 3 chr1 33279773 33280085 -209384268 + AluSq SINE Alu 1 313 0 486 0 0 0 chr1 33280090 33280144 -209384209 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 207 182 0 0 chr1 33280166 33280199 -209384154 + A-rich Low_complexity Low_complexity 4 36 0 634 331 82 13 chr1 33280199 33280516 -209383837 - L2 LINE L2 -614 2700 2362 408 272 46 33 chr1 33281587 33281760 -209382593 - MIR SINE MIR -24 184 8 396 0 0 0 chr1 33282776 33282820 -209381533 + (CA)n Simple_repeat Simple_repeat 2 45 0 405 294 96 7 chr1 33283179 33283325 -209381028 - MIR3 SINE MIR -7 201 43 218 378 0 17 chr1 33284244 33284363 -209379990 + MIR SINE MIR 122 238 -24 327 250 10 40 chr1 33284688 33284788 -209379565 - L2 LINE L2 -214 3058 2962 309 280 124 83 chr1 33284830 33285048 -209379305 + MIR SINE MIR 35 261 -1 509 229 177 17 chr1 33285107 33285282 -209379071 - MIR SINE MIR -12 250 48 2603 69 41 24 chr1 33285613 33285802 -209378551 + MER41A LTR ERV1 1 185 -369 2274 68 0 42 chr1 33285802 33286113 -209378240 + AluY SINE Alu 4 301 -10 2603 69 41 24 chr1 33286113 33286341 -209378012 + MER41A LTR ERV1 185 425 -129 2347 91 0 0 chr1 33286341 33286648 -209377705 - AluSg SINE Alu 0 310 4 1188 101 11 0 chr1 33286648 33286837 -209377516 - MER41A LTR ERV1 -363 191 1 487 135 45 0 chr1 33286843 33286932 -209377421 - AluSg1 SINE Alu -216 93 1 852 121 0 0 chr1 33286932 33287072 -209377281 + MER41B LTR ERV1 496 635 0 222 351 60 75 chr1 33287705 33288104 -209376249 - L2 LINE L2 0 3272 2880 2008 124 10 3 chr1 33288700 33288998 -209375355 + AluJo SINE Alu 1 300 -12 216 294 15 0 chr1 33289481 33289549 -209374804 + G-rich Low_complexity Low_complexity 3 71 0 261 279 117 9 chr1 33290053 33290164 -209374189 - MIR3 SINE MIR -39 169 47 182 247 134 21 chr1 33290137 33290234 -209374119 - L2 LINE L2 -1820 1494 1387 * 245 344 43 0 chr1 33290276 33290369 -209373984 + MIR SINE MIR 87 183 -79 279 236 0 57 chr1 33292547 33292643 -209371710 - MIR3 SINE MIR -45 163 73 1865 246 107 18 chr1 33293284 33293980 -209370373 + L2 LINE L2 2175 2938 -376 1896 141 10 3 chr1 33293980 33294270 -209370083 - AluJb SINE Alu -20 292 1 457 188 130 51 chr1 33294270 33294408 -209369945 + L2 LINE L2 3165 3313 0 573 258 140 27 chr1 33294429 33294650 -209369703 + MIR SINE MIR 15 260 -2 659 299 180 24 chr1 33294668 33295130 -209369223 + L2 LINE L2 2252 2785 -529 508 278 219 22 chr1 33295221 33295541 -209368812 + L2 LINE L2 2926 3308 -5 297 68 0 0 chr1 33296052 33296096 -209368257 + (GA)n Simple_repeat Simple_repeat 1 44 0 252 305 85 9 chr1 33296525 33296639 -209367714 + MIR SINE MIR 30 161 -101 * 636 255 87 5 chr1 33296622 33296818 -209367535 - MIR SINE MIR -1 261 50 1511 151 0 130 chr1 33296827 33297176 -209367177 - AluJb SINE Alu 0 308 2 321 286 163 0 chr1 33297450 33297548 -209366805 - L2 LINE L2 0 3272 3159 379 316 12 19 chr1 33297556 33297717 -209366636 + MIR SINE MIR 26 184 -63 398 299 32 48 chr1 33298351 33298538 -209365815 - MLT1I LTR MaLR -115 294 111 486 296 70 30 chr1 33298839 33299038 -209365315 - MIR SINE MIR -36 226 20 2421 70 3 10 chr1 33299342 33299656 -209364697 - AluSp SINE Alu -1 312 1 390 305 61 35 chr1 33301632 33301829 -209362524 - MIR SINE MIR -13 249 48 616 226 65 0 chr1 33301920 33302075 -209362278 - MIR SINE MIR -6 256 92 799 339 107 19 chr1 33304163 33304650 -209359703 - L3 LINE CR1 -11 1566 1037 209 287 0 14 chr1 33306172 33306249 -209358104 - MIR SINE MIR -78 130 74 266 188 141 0 chr1 33307015 33307079 -209357274 - MIR SINE MIR -113 149 77 272 324 0 0 chr1 33307230 33307298 -209357055 + L2 LINE L2 3246 3313 0 452 273 52 17 chr1 33308566 33308765 -209355588 - MIR SINE MIR -54 208 4 871 261 6 71 chr1 33308776 33308856 -209355497 + L2 LINE L2 2966 3050 -263 1813 149 34 0 chr1 33308856 33309151 -209355202 - AluJo SINE Alu -7 305 1 871 261 6 71 chr1 33309151 33309381 -209354972 + L2 LINE L2 3050 3256 -57 257 341 0 0 chr1 33309432 33309517 -209354836 - MIR SINE MIR -133 129 45 1657 125 114 11 chr1 33310001 33310281 -209354072 - AluSg1 SINE Alu 0 309 1 252 248 33 91 chr1 33310297 33310418 -209353935 - MIR SINE MIR -65 197 84 423 283 27 16 chr1 33310646 33310823 -209353530 + MIR SINE MIR 18 191 -59 324 269 36 17 chr1 33311345 33311472 -209352881 + MIR SINE MIR 34 161 -61 550 305 76 5 chr1 33312538 33312753 -209351600 + MIR SINE MIR 6 240 -22 357 212 288 8 chr1 33312765 33312883 -209351470 - MIR SINE MIR 0 262 112 180 234 0 0 chr1 33314280 33314327 -209350026 + GA-rich Low_complexity Low_complexity 2 48 0 468 296 70 16 chr1 33314394 33314580 -209349773 + MIR SINE MIR 34 229 -33 386 200 76 38 chr1 33314609 33314714 -209349639 - MIR SINE MIR -105 157 49 217 191 21 0 chr1 33315816 33315863 -209348490 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 564 198 86 8 chr1 33316315 33316486 -209347867 - MIR SINE MIR -62 146 9 516 283 18 74 chr1 33316479 33316762 -209347591 - L2 LINE L2 -85 3187 2921 * 423 176 0 0 chr1 33317186 33317277 -209347076 + (TG)n Simple_repeat Simple_repeat 2 92 0 931 184 12 0 chr1 33319261 33319429 -209344924 - AluSg/x SINE Alu -6 304 135 264 319 22 0 chr1 33319747 33319838 -209344515 + MIR SINE MIR 13 105 -157 651 135 72 0 chr1 33319848 33319959 -209344394 + MLT1D LTR MaLR 1 119 -386 21 36 0 0 chr1 33320121 33320149 -209344204 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr1 33320244 33320287 -209344066 + (TG)n Simple_repeat Simple_repeat 1 43 0 299 205 0 72 chr1 33320326 33320409 -209343944 + HAL1 LINE L1 846 922 -1585 1800 90 6 136 chr1 33320930 33321275 -209343078 + AluSx SINE Alu 1 300 -12 878 279 35 4 chr1 33321343 33321503 -209342850 + MIR SINE MIR 1 173 -89 2166 148 157 7 chr1 33321503 33321942 -209342411 + MLT1D LTR MaLR 1 505 0 878 279 35 4 chr1 33321942 33322035 -209342318 + MIR SINE MIR 173 262 0 1929 149 0 0 chr1 33322064 33322359 -209341994 + AluSx SINE Alu 1 295 -17 642 263 22 45 chr1 33322416 33322595 -209341758 - MLT1J LTR MaLR -325 186 12 1949 135 7 3 chr1 33322661 33322958 -209341395 + AluJb SINE Alu 15 312 0 330 280 8 48 chr1 33323001 33323126 -209341227 - HAL1 LINE L1 -156 2351 2232 476 292 31 15 chr1 33323665 33323860 -209340493 - HAL1 LINE L1 -703 1804 1607 2294 99 0 0 chr1 33324017 33324319 -209340034 - AluSx SINE Alu -8 304 3 183 42 0 0 chr1 33324475 33324499 -209339854 + (TC)n Simple_repeat Simple_repeat 1 24 0 1465 205 0 3 chr1 33324500 33324788 -209339565 - AluSx SINE Alu -19 293 7 413 226 124 49 chr1 33324797 33325103 -209339250 - L1M4 LINE L1 -2845 3301 2973 1884 66 0 4 chr1 33325113 33325355 -209338998 + AluSc SINE Alu 31 271 -38 287 0 53 0 chr1 33325361 33325399 -209338954 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 241 237 0 0 chr1 33325411 33325470 -209338883 - L1M4 LINE L1 -3795 2351 2293 1788 186 3 0 chr1 33325535 33325846 -209338507 - AluJo SINE Alu 0 312 1 467 298 145 60 chr1 33326186 33327060 -209337293 - L1M4 LINE L1 -2791 3355 2407 417 231 10 10 chr1 33327063 33327167 -209337186 - MLT1J LTR MaLR 0 511 408 551 289 54 18 chr1 33327173 33327506 -209336847 + LTR33 LTR ERVL 104 512 -9 2988 148 2 8 chr1 33327956 33328442 -209335911 - MER31A LTR ERV1 -2 483 1 324 0 0 0 chr1 33328510 33328546 -209335807 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 2135 133 0 0 chr1 33328546 33329037 -209335316 - AluSg SINE Alu 0 491 1 1772 117 7 11 chr1 33329096 33329370 -209334983 - AluSg SINE Alu -1 309 37 740 141 0 62 chr1 33329370 33329498 -209334855 + AluJb SINE Alu 191 310 -2 181 292 14 0 chr1 33329579 33329651 -209334702 + MIR SINE MIR 28 100 -162 1541 138 17 59 chr1 33330087 33330377 -209333976 + AluJb SINE Alu 27 304 -8 268 248 72 124 chr1 33330651 33330804 -209333549 + MIR SINE MIR 20 164 -98 378 266 26 9 chr1 33331033 33331146 -209333207 + MIR SINE MIR 50 164 -98 1194 200 68 4 chr1 33331170 33331450 -209332903 - MER66B LTR ERV1 0 486 189 202 228 18 0 chr1 33331740 33331797 -209332556 + GA-rich Low_complexity Low_complexity 2 59 0 539 249 116 0 chr1 33331962 33332135 -209332218 + MIR SINE MIR 70 262 0 473 295 250 3 chr1 33332151 33332439 -209331914 - L2 LINE L2 -40 3273 2915 * 842 292 133 38 chr1 33332438 33333105 -209331248 - L2 LINE L2 -352 2962 2232 199 245 0 149 chr1 33333229 33333271 -209331082 - MIR SINE MIR -127 135 113 2627 92 59 15 chr1 33333271 33333661 -209330692 + L1PA11 LINE L1 5768 6174 0 199 245 0 149 chr1 33333661 33333712 -209330641 - MIR SINE MIR -149 113 56 181 335 7 79 chr1 33333760 33333912 -209330441 - L2 LINE L2 -459 2855 2715 190 241 156 71 chr1 33333977 33334118 -209330235 - L2 LINE L2 -3 3310 3158 335 258 84 15 chr1 33334234 33334365 -209329988 + MIR3 SINE MIR 58 201 -7 278 325 24 32 chr1 33335448 33335574 -209328779 - MIR3 SINE MIR -48 160 36 619 286 101 9 chr1 33335650 33335877 -209328476 + MIR SINE MIR 6 253 -9 273 229 229 0 chr1 33335900 33336005 -209328348 - MIR3 SINE MIR -6 202 74 317 283 47 28 chr1 33336188 33336294 -209328059 - MIR SINE MIR -108 154 47 558 256 25 12 chr1 33336445 33336605 -209327748 + MER103 DNA DNA 3 164 -2 217 213 223 21 chr1 33336721 33336815 -209327538 - MER5A DNA MER1_type -22 167 55 360 293 68 8 chr1 33336842 33337001 -209327352 + MIR SINE MIR 23 190 -59 451 295 26 81 chr1 33337430 33337551 -209326802 + MIR SINE MIR 13 116 -146 2297 95 0 3 chr1 33337551 33337856 -209326497 - AluSx SINE Alu -6 306 3 451 295 26 81 chr1 33337856 33337968 -209326385 + MIR SINE MIR 116 233 -29 852 308 83 10 chr1 33338060 33338522 -209325831 - L2 LINE L2 -189 3083 2585 207 283 113 0 chr1 33338644 33338750 -209325603 - L2 LINE L2 -1005 2309 2192 184 238 48 95 chr1 33339351 33339414 -209324939 + L2 LINE L2 3253 3312 -1 * 517 239 151 7 chr1 33339403 33339625 -209324728 + MIR SINE MIR 7 256 -6 299 337 128 47 chr1 33339920 33340326 -209324027 + L2 LINE L2 2355 2793 -521 427 259 63 51 chr1 33340328 33340486 -209323867 - L2 LINE L2 -1 3271 3112 320 360 39 70 chr1 33340588 33340971 -209323382 + L2 LINE L2 2897 3267 -5 249 259 0 0 chr1 33340969 33341027 -209323326 + MIR SINE MIR 97 154 -108 * 247 309 183 0 chr1 33341443 33341569 -209322784 + MIR3 SINE MIR 17 165 -43 224 313 50 0 chr1 33341595 33341675 -209322678 + L2 LINE L2 2973 3056 -216 205 316 0 0 chr1 33341888 33341945 -209322408 - MIR SINE MIR 0 262 206 1323 150 18 9 chr1 33342135 33342361 -209321992 - AluJo SINE Alu -1 311 84 254 331 115 7 chr1 33342396 33342544 -209321809 - MIR SINE MIR -51 211 48 241 250 16 16 chr1 33343002 33343066 -209321287 + MIR SINE MIR 30 93 -115 628 255 87 5 chr1 33343099 33343295 -209321058 - MIR SINE MIR -1 261 50 1503 151 0 130 chr1 33343304 33343653 -209320700 - AluJb SINE Alu 0 308 2 315 286 163 0 chr1 33343927 33344025 -209320328 - L2 LINE L2 0 3272 3159 360 279 31 37 chr1 33344033 33344194 -209320159 + MIR SINE MIR 26 184 -63 453 285 26 70 chr1 33344787 33345015 -209319338 - MLT1I LTR MaLR -81 328 111 483 296 70 30 chr1 33345316 33345515 -209318838 - MIR SINE MIR -36 226 20 2025 107 3 16 chr1 33345819 33346129 -209318224 - AluSq SINE Alu -1 312 7 392 257 30 0 chr1 33346506 33346607 -209317746 - MIR SINE MIR -127 135 32 845 277 115 50 chr1 33347944 33348112 -209316241 + L2 LINE L2 2175 2331 -983 1852 158 135 20 chr1 33348112 33348467 -209315886 + MSTD LTR MaLR 1 396 0 845 277 115 50 chr1 33348467 33348879 -209315474 + L2 LINE L2 2331 2793 -521 203 287 163 31 chr1 33349416 33349545 -209314808 - MIR SINE MIR -32 230 85 1115 193 69 26 chr1 33349565 33349870 -209314483 + MER33 DNA MER1_type 1 318 -6 264 296 9 78 chr1 33350105 33350220 -209314133 - MIR SINE MIR -50 212 106 252 375 45 0 chr1 33350357 33350533 -209313820 - L2 LINE L2 -173 3099 2916 335 206 78 71 chr1 33350736 33350877 -209313476 - MIR3 SINE MIR -9 199 58 379 241 75 8 chr1 33351677 33351806 -209312547 + MIR SINE MIR 58 202 -58 436 250 80 34 chr1 33352523 33352699 -209311654 + MIR SINE MIR 46 229 -33 507 290 28 7 chr1 33352714 33352859 -209311494 - MIR SINE MIR -4 258 111 385 272 46 33 chr1 33353693 33353866 -209310487 - MIR SINE MIR -24 184 8 396 0 0 0 chr1 33354883 33354927 -209309426 + (CA)n Simple_repeat Simple_repeat 2 45 0 373 254 45 9 chr1 33355287 33355397 -209308956 - MIR3 SINE MIR -7 201 88 238 299 142 16 chr1 33356380 33356507 -209307846 - MIR SINE MIR -6 256 114 373 265 73 73 chr1 33357881 33358085 -209306268 - MIR SINE MIR -28 234 31 248 250 125 18 chr1 33358389 33358501 -209305852 - MIR SINE MIR -55 153 30 254 186 70 47 chr1 33359534 33359620 -209304733 - MER5A DNA MER1_type -22 167 80 424 330 116 9 chr1 33360263 33360487 -209303866 - MIR SINE MIR 0 262 15 331 335 92 37 chr1 33360505 33360723 -209303630 + L3 LINE CR1 1345 1574 -3 300 324 122 0 chr1 33362208 33362347 -209302006 - MIR3 SINE MIR -24 184 29 186 171 0 0 chr1 33364033 33364074 -209300279 + (CA)n Simple_repeat Simple_repeat 2 42 0 201 331 56 0 chr1 33365733 33365875 -209298478 + (CAGAGA)n Simple_repeat Simple_repeat 5 154 0 279 0 0 0 chr1 33366974 33367005 -209297348 + (CA)n Simple_repeat Simple_repeat 1 31 0 301 324 233 28 chr1 33367086 33367373 -209296980 - L2 LINE L2 -13 3259 2914 206 135 27 0 chr1 33369407 33369444 -209294909 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 206 342 0 13 chr1 33370953 33371032 -209293321 - MIR3 SINE MIR -49 159 82 385 295 93 0 chr1 33371118 33371247 -209293106 - MIR SINE MIR -43 219 79 384 381 35 17 chr1 33372112 33372343 -209292010 + MIR SINE MIR 28 262 0 548 309 209 18 chr1 33372810 33373552 -209290801 + L2 LINE L2 1522 2405 -909 284 296 30 44 chr1 33373528 33373663 -209290690 + L2 LINE L2 2951 3083 -189 * 200 276 228 8 chr1 33373875 33374002 -209290351 - L3 LINE CR1 -815 762 608 263 338 62 62 chr1 33374152 33374312 -209290041 - L3 LINE CR1 -1221 356 197 537 226 250 10 chr1 33374880 33375088 -209289265 - MIR SINE MIR -3 259 2 663 281 95 5 chr1 33375488 33375698 -209288655 + MIR SINE MIR 20 248 -14 1786 166 6 16 chr1 33375709 33376080 -209288273 + AluJo SINE Alu 1 368 0 256 331 104 0 chr1 33376087 33376241 -209288112 + L2 LINE L2 2886 3055 -217 204 266 64 32 chr1 33377038 33377132 -209287221 + L2 LINE L2 3142 3238 -34 244 311 48 10 chr1 33377213 33377316 -209287037 + L2 LINE L2 2873 2979 -334 439 197 8 57 chr1 33377427 33377549 -209286804 - MER94 DNA DNA -18 116 1 * 615 256 172 0 chr1 33377549 33377807 -209286546 - MER113 DNA MER1_type? -131 390 88 200 244 0 22 chr1 33377965 33378010 -209286343 - L2 LINE L2 -8 3305 3262 * 616 319 97 0 chr1 33377978 33378194 -209286159 - MIR SINE MIR -14 248 12 210 322 55 62 chr1 33378537 33378683 -209285670 - L2 LINE L2 -136 3136 2992 277 265 71 0 chr1 33378861 33378959 -209285394 - MIR SINE MIR -71 137 33 237 278 167 19 chr1 33381095 33381203 -209283150 - MIR3 SINE MIR -51 157 34 558 346 132 11 chr1 33381626 33381981 -209282372 + L2 LINE L2 2855 3252 -20 660 292 31 16 chr1 33383007 33383199 -209281154 + MIR SINE MIR 68 262 0 276 260 171 10 chr1 33383617 33383720 -209280633 + MIR SINE MIR 37 153 -63 213 313 125 19 chr1 33384253 33384413 -209279940 - MIR3 SINE MIR -22 186 10 24 67 0 0 chr1 33387088 33387133 -209277220 + GC_rich Low_complexity Low_complexity 1 45 0 516 259 212 0 chr1 33387927 33388120 -209276233 - MIR SINE MIR -16 246 13 237 318 0 0 chr1 33388246 33388312 -209276041 + GA-rich Low_complexity Low_complexity 2 67 0 189 74 0 0 chr1 33388681 33388708 -209275645 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 22 35 0 0 chr1 33388965 33388994 -209275359 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr1 33389985 33390022 -209274331 + GC_rich Low_complexity Low_complexity 1 37 0 114 51 0 0 chr1 33390199 33390376 -209273977 + GC_rich Low_complexity Low_complexity 1 177 0 186 71 0 0 chr1 33390376 33390404 -209273949 + (G)n Simple_repeat Simple_repeat 1 28 0 206 194 14 56 chr1 33390660 33390732 -209273621 + G-rich Low_complexity Low_complexity 6 74 0 341 207 98 4 chr1 33393346 33393438 -209270915 + MIR3 SINE MIR 67 166 -42 292 80 40 0 chr1 33394388 33394438 -209269915 - L2 LINE L2 0 3313 3262 827 303 132 20 chr1 33394440 33395164 -209269189 + L2 LINE L2 2493 3313 0 556 313 51 10 chr1 33395274 33395469 -209268884 + MIR SINE MIR 20 222 -40 353 307 39 8 chr1 33396487 33396614 -209267739 - MIR SINE MIR -29 233 103 224 250 24 12 chr1 33397415 33397499 -209266854 + (TG)n Simple_repeat Simple_repeat 2 86 0 315 0 0 0 chr1 33397652 33397687 -209266666 + (TG)n Simple_repeat Simple_repeat 1 35 0 28 61 0 0 chr1 33398329 33398378 -209265975 + GC_rich Low_complexity Low_complexity 1 49 0 207 246 31 0 chr1 33398440 33398505 -209265848 + (TG)n Simple_repeat Simple_repeat 2 68 0 204 40 0 0 chr1 33399634 33399659 -209264694 + (CA)n Simple_repeat Simple_repeat 1 25 0 180 331 107 33 chr1 33400096 33400217 -209264136 + L2 LINE L2 3142 3271 -1 865 264 46 84 chr1 33400570 33400986 -209263367 - L2 LINE L2 0 3313 2914 1641 135 8 0 chr1 33401122 33401359 -209262994 + AluJo SINE Alu 1 239 -73 784 205 35 20 chr1 33401666 33401866 -209262487 + MER63A DNA MER1_type 1 203 -7 1885 129 3 20 chr1 33402115 33402417 -209261936 + AluJb SINE Alu 1 297 -15 348 225 129 55 chr1 33402514 33402692 -209261661 + MIR3 SINE MIR 21 208 0 232 324 73 79 chr1 33403739 33404079 -209260274 + L2 LINE L2 2844 3181 -91 2271 109 3 0 chr1 33404079 33404415 -209259938 + AluSq SINE Alu 1 337 0 262 279 0 0 chr1 33404791 33404852 -209259501 + L3b LINE CR1 1337 1397 -186 2442 65 0 0 chr1 33405686 33405994 -209258359 - AluY SINE Alu -3 308 1 311 240 30 49 chr1 33405999 33406102 -209258251 - MIR SINE MIR -63 145 45 1586 269 78 9 chr1 33406284 33406370 -209257983 + L1ME4a LINE L1 5385 5464 -657 216 0 0 0 chr1 33406370 33406394 -209257959 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1586 269 78 9 chr1 33406394 33406964 -209257389 + L1ME4a LINE L1 5464 6086 -35 297 0 0 0 chr1 33407004 33407037 -209257316 + (TG)n Simple_repeat Simple_repeat 1 33 0 521 314 59 13 chr1 33407073 33407309 -209257044 - L2 LINE L2 -196 3076 2830 516 332 66 63 chr1 33407321 33407837 -209256516 - HAL1 LINE L1 -1167 1340 875 274 301 31 56 chr1 33407973 33408169 -209256184 + L2 LINE L2 2787 2978 -294 788 185 22 6 chr1 33410240 33410418 -209253935 + L1MA7 LINE L1 6111 6291 0 567 289 78 4 chr1 33410645 33411024 -209253329 + MER115 DNA AcHobo 9 455 -238 893 140 135 11 chr1 33411067 33411245 -209253108 + MIR SINE MIR 63 262 0 204 237 151 65 chr1 33413979 33414118 -209250235 - L3 LINE CR1 -69 1508 1358 200 329 95 15 chr1 33414540 33414677 -209249676 - L3b LINE CR1 -136 1447 1300 445 254 53 35 chr1 33414704 33414873 -209249480 - MIR SINE MIR -17 245 74 238 217 72 0 chr1 33415777 33415846 -209248507 - MIR SINE MIR -110 152 79 235 293 24 36 chr1 33416084 33416251 -209248102 + C-rich Low_complexity Low_complexity 3 167 0 655 263 24 96 chr1 33418682 33418933 -209245420 + MIR SINE MIR 2 234 -28 260 271 185 8 chr1 33419374 33419500 -209244853 - MIR SINE MIR -62 146 21 187 284 15 15 chr1 33420025 33420092 -209244261 + L2 LINE L2 3206 3272 0 288 178 41 41 chr1 33420475 33420548 -209243805 - MIR SINE MIR -109 153 81 530 281 112 65 chr1 33421268 33421392 -209242961 - L1ME4a LINE L1 -38 6083 5966 2205 97 19 16 chr1 33421392 33421700 -209242653 - AluSc SINE Alu 0 309 1 530 281 112 65 chr1 33421700 33422067 -209242286 - L1ME4a LINE L1 -155 5966 5569 522 231 231 5 chr1 33422174 33422360 -209241993 + MIR SINE MIR 21 248 -14 216 0 0 0 chr1 33422388 33422412 -209241941 + (TCCCC)n Simple_repeat Simple_repeat 2 25 0 454 214 71 0 chr1 33422588 33422686 -209241667 + L2 LINE L2 3209 3313 0 259 236 93 99 chr1 33423321 33423482 -209240871 - MIR SINE MIR -91 171 12 283 305 214 0 chr1 33423963 33424094 -209240259 + MIR SINE MIR 83 241 -21 1051 201 11 0 chr1 33424206 33424380 -209239973 + MER45A DNA AcHobo 3 178 0 290 280 10 10 chr1 33424936 33425075 -209239278 + CT-rich Low_complexity Low_complexity 1 139 0 466 340 42 5 chr1 33425597 33425788 -209238565 - MIR SINE MIR -43 219 22 357 271 83 14 chr1 33425867 33426011 -209238342 + MIR3 SINE MIR 43 196 -12 246 302 93 12 chr1 33426072 33426158 -209238195 + MIR3 SINE MIR 8 100 -108 256 294 124 7 chr1 33427146 33427311 -209237042 + MIR SINE MIR 17 191 -68 525 252 43 0 chr1 33427595 33427710 -209236643 + L2 LINE L2 3141 3260 -12 2422 79 0 0 chr1 33428773 33429063 -209235290 + AluSx SINE Alu 1 290 -22 723 260 87 29 chr1 33429147 33429389 -209234964 - MIR SINE MIR -1 261 6 234 304 43 9 chr1 33429514 33429629 -209234724 + L1ME4a LINE L1 5998 6116 -5 421 247 27 97 chr1 33430010 33430310 -209234043 + L1ME LINE L1 753 1031 -5088 1838 151 0 27 chr1 33430354 33430646 -209233707 + AluJo SINE Alu 17 300 -12 379 171 0 23 chr1 33430646 33430734 -209233619 + GA-rich Low_complexity Low_complexity 1 86 0 554 199 49 57 chr1 33430739 33430970 -209233383 + L1ME LINE L1 1046 1279 -4850 1168 207 15 49 chr1 33431011 33431277 -209233076 - MIR SINE MIR 0 262 6 671 328 90 76 chr1 33431305 33431857 -209232496 + L1ME LINE L1 1400 1966 -4344 2244 109 3 10 chr1 33431857 33432170 -209232183 - AluY SINE Alu 0 311 1 671 328 90 76 chr1 33432170 33432331 -209232022 + L1ME LINE L1 1966 2123 -4187 1767 168 16 16 chr1 33432331 33432634 -209231719 + AluJo SINE Alu 1 303 -9 916 266 62 35 chr1 33432642 33433292 -209231061 + L1ME LINE L1 2096 2770 -3359 1331 153 110 33 chr1 33433292 33433435 -209230918 - MER33 DNA MER1_type -2261 324 193 2129 102 0 33 chr1 33433435 33433740 -209230613 - AluSg SINE Alu -15 295 1 1331 153 110 33 chr1 33433740 33433897 -209230456 - MER33 DNA MER1_type -2392 193 1 916 266 62 35 chr1 33433897 33433990 -209230363 + L1ME LINE L1 2770 2859 -3270 2020 113 35 7 chr1 33433993 33434276 -209230077 + AluSx SINE Alu 1 291 -21 671 168 0 0 chr1 33434276 33434395 -209229958 + MER49 LTR ERV1 188 306 -617 1476 265 101 72 chr1 33435083 33436507 -209227846 + L1ME LINE L1 2857 4321 -1808 983 248 75 42 chr1 33436526 33436551 -209227802 + L1ME LINE L1 5299 5322 -823 1969 92 28 0 chr1 33436551 33436800 -209227553 + AluSq SINE Alu 1 256 -57 983 248 75 42 chr1 33436800 33437250 -209227103 + L1ME LINE L1 5322 5786 -359 795 215 34 17 chr1 33437259 33437436 -209226917 + MIR SINE MIR 71 250 -12 180 77 0 0 chr1 33437703 33437729 -209226624 + (TCCCC)n Simple_repeat Simple_repeat 4 29 0 617 250 20 60 chr1 33437880 33437992 -209226361 + MIR SINE MIR 48 150 -112 1974 154 20 0 chr1 33437992 33438285 -209226068 - AluJb SINE Alu -13 299 1 617 250 20 60 chr1 33438285 33438372 -209225981 + MIR SINE MIR 150 239 -23 204 267 0 0 chr1 33438751 33438796 -209225557 - MIR SINE MIR -110 152 108 2027 128 47 3 chr1 33438827 33439124 -209225229 + AluSx SINE Alu 1 310 -2 181 259 82 35 chr1 33439183 33439268 -209225085 - MIR SINE MIR -100 108 20 679 333 44 4 chr1 33439700 33439949 -209224404 - MIR SINE MIR -2 260 2 515 284 77 24 chr1 33440198 33440367 -209223986 + MIR SINE MIR 61 238 -24 210 257 27 68 chr1 33440421 33440495 -209223858 + MIR SINE MIR 21 91 -171 401 215 66 50 chr1 33440722 33440843 -209223510 + MIR SINE MIR 69 191 -71 671 189 85 57 chr1 33440869 33440902 -209223451 - MIR SINE MIR -13 249 218 2300 94 17 0 chr1 33440902 33441200 -209223153 - AluSc SINE Alu -6 303 1 671 189 85 57 chr1 33441200 33441378 -209222975 - MIR SINE MIR -44 218 32 266 244 200 0 chr1 33443339 33443429 -209220924 - MIR SINE MIR -71 137 30 180 0 0 0 chr1 33443948 33443968 -209220385 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3190 94 2 2 chr1 33443970 33444417 -209219936 - L1PA13 LINE L1 -11 6152 5706 252 222 0 89 chr1 33444604 33444694 -209219659 - HAL1 LINE L1 -163 2344 2263 198 0 0 0 chr1 33444737 33444759 -209219594 + (TA)n Simple_repeat Simple_repeat 2 23 0 2207 115 0 0 chr1 33444759 33445054 -209219299 - AluSg SINE Alu -15 295 1 27 0 0 0 chr1 33445057 33445084 -209219269 + AT_rich Low_complexity Low_complexity 1 27 0 290 192 0 41 chr1 33445230 33445303 -209219050 - HAL1b LINE L1 -547 801 732 1863 154 37 10 chr1 33445396 33445695 -209218658 - AluJo SINE Alu -5 307 1 314 293 24 0 chr1 33445787 33445869 -209218484 + L1ME3A LINE L1 5792 5875 -295 545 186 9 9 chr1 33445886 33445999 -209218354 + L1MC3 LINE L1 7673 7785 0 647 201 132 75 chr1 33446303 33446556 -209217797 - MIR SINE MIR 0 262 16 2319 116 7 0 chr1 33446569 33446879 -209217474 - AluSx SINE Alu 0 312 1 2187 111 44 3 chr1 33447052 33447349 -209217004 - AluSq SINE Alu -4 309 1 393 293 139 22 chr1 33447349 33447666 -209216687 - L1M4 LINE L1 -1316 4830 4477 2087 141 11 28 chr1 33447811 33448172 -209216181 + L1MB5 LINE L1 5812 6166 -8 314 359 72 18 chr1 33448178 33448345 -209216008 - L1ME LINE L1 -460 5661 5486 2273 94 7 7 chr1 33448366 33448673 -209215680 + AluSx SINE Alu 4 310 -2 229 153 56 42 chr1 33448834 33448906 -209215447 - MER20B DNA MER1_type -34 749 677 694 261 78 23 chr1 33448914 33449132 -209215221 + MIR SINE MIR 5 234 -28 723 220 101 10 chr1 33449134 33449343 -209215010 - MER20B DNA MER1_type -143 640 413 2123 104 0 0 chr1 33449343 33449612 -209214741 - AluSx SINE Alu -43 269 1 512 254 69 0 chr1 33449647 33449777 -209214576 - MER20B DNA MER1_type -549 234 96 1685 159 0 39 chr1 33449928 33450211 -209214142 - AluJo SINE Alu -40 272 1 705 240 162 44 chr1 33450379 33450544 -209213809 + L2 LINE L2 2555 2699 -614 2451 68 3 0 chr1 33450544 33450836 -209213517 + AluSp SINE Alu 1 293 -20 705 240 162 44 chr1 33450836 33451207 -209213146 + L2 LINE L2 2699 3146 -167 2015 144 3 16 chr1 33451375 33451688 -209212665 + AluJb SINE Alu 1 309 -3 443 219 21 0 chr1 33451690 33451786 -209212567 - L1ME2 LINE L1 -43 6121 6024 857 190 6 0 chr1 33451843 33452001 -209212352 - L1MA10 LINE L1 -7 6327 6169 2456 86 3 0 chr1 33452094 33452398 -209211955 - AluSx SINE Alu -7 305 1 2442 95 3 0 chr1 33452409 33452715 -209211638 - AluSp SINE Alu -6 307 1 445 265 52 88 chr1 33453844 33454093 -209210260 - MIR SINE MIR 0 262 23 2306 81 10 0 chr1 33454296 33454591 -209209762 - AluY SINE Alu -13 298 1 2160 73 91 0 chr1 33454592 33454866 -209209487 - AluSc SINE Alu -10 299 1 325 195 37 49 chr1 33454946 33455028 -209209325 - MIR SINE MIR -98 164 84 652 252 42 30 chr1 33455804 33456066 -209208287 - L1ME LINE L1 -298 5823 5559 2501 78 0 3 chr1 33456187 33456496 -209207857 - AluSg SINE Alu -2 308 1 24 0 0 0 chr1 33456547 33456571 -209207782 + AT_rich Low_complexity Low_complexity 1 24 0 1606 215 44 0 chr1 33456733 33457031 -209207322 + AluJb SINE Alu 1 311 -1 1088 174 12 0 chr1 33457037 33457204 -209207149 + AluJb SINE Alu 133 301 -11 1703 168 25 4 chr1 33458195 33458469 -209205884 + AluJb SINE Alu 1 280 -32 1898 68 0 8 chr1 33458898 33459161 -209205192 + L1P5 LINE L1 5410 5670 -481 201 74 0 0 chr1 33459162 33459189 -209205164 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1666 139 3 58 chr1 33461964 33462274 -209202079 + AluJb SINE Alu 1 293 -19 2281 69 7 3 chr1 33462874 33463165 -209201188 - AluSc SINE Alu -17 292 1 208 135 0 0 chr1 33464306 33464343 -209200010 + (A)n Simple_repeat Simple_repeat 1 37 0 766 0 21 0 chr1 33464351 33464445 -209199908 + (TA)n Simple_repeat Simple_repeat 2 97 0 1854 139 0 0 chr1 33464640 33464914 -209199439 + AluJb SINE Alu 1 274 -38 604 104 8 52 chr1 33464914 33465048 -209199305 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 513 311 141 18 chr1 33465124 33465564 -209198789 - L2 LINE L2 -842 2472 1979 793 98 8 32 chr1 33465570 33465693 -209198660 + FLAM_C SINE Alu 6 125 -18 2077 126 0 0 chr1 33465706 33466000 -209198353 + AluSq SINE Alu 3 296 -17 2073 113 3 0 chr1 33466026 33466319 -209198034 + AluSx SINE Alu 1 294 -18 2143 119 0 3 chr1 33466321 33466632 -209197721 + AluSq SINE Alu 1 310 -3 2155 92 3 0 chr1 33467285 33467596 -209196757 - AluSp SINE Alu 0 312 1 471 260 215 23 chr1 33467616 33467835 -209196518 - MIR SINE MIR 0 262 2 560 163 0 0 chr1 33468722 33468814 -209195539 + AluJ/FLAM SINE Alu 2 93 -219 180 77 0 0 chr1 33468837 33468863 -209195490 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1663 102 0 4 chr1 33468924 33469149 -209195204 + AluSx SINE Alu 1 224 -88 1966 114 0 38 chr1 33469152 33469467 -209194886 + AluSq SINE Alu 1 303 -10 2023 111 0 0 chr1 33469476 33469755 -209194598 + AluSx SINE Alu 1 279 -33 270 0 0 0 chr1 33469755 33469785 -209194568 + (CA)n Simple_repeat Simple_repeat 1 30 0 428 241 132 61 chr1 33469800 33470012 -209194341 - MIR SINE MIR -26 236 10 226 318 64 9 chr1 33470009 33470119 -209194234 - MIR SINE MIR -61 201 86 * 1691 112 0 35 chr1 33470593 33470852 -209193501 - AluSx SINE Alu -53 259 10 206 288 0 17 chr1 33471796 33471855 -209192498 - L3 LINE CR1 -3 1574 1517 2369 54 0 3 chr1 33472082 33472380 -209191973 + AluY SINE Alu 1 297 -14 236 275 38 25 chr1 33472487 33472567 -209191786 - L3 LINE CR1 -74 1503 1423 2188 88 3 38 chr1 33472604 33472923 -209191430 - AluSc SINE Alu -1 308 1 311 0 0 25 chr1 33473029 33473069 -209191284 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 742 234 7 0 chr1 33473071 33473216 -209191137 - FRAM SINE Alu -30 146 1 328 214 194 0 chr1 33473282 33473385 -209190968 + L2 LINE L2 3191 3313 0 571 226 97 77 chr1 33473578 33473741 -209190612 + L1ME4a LINE L1 5634 5792 -329 2148 94 0 10 chr1 33473741 33474040 -209190313 + AluSg SINE Alu 1 296 -14 571 226 97 77 chr1 33474040 33474247 -209190106 + L1ME4a LINE L1 5792 6008 -113 2038 89 11 7 chr1 33474251 33474557 -209189796 + AluSp SINE Alu 1 307 0 245 169 0 0 chr1 33474651 33474698 -209189655 - L1MB7 LINE L1 0 6178 6132 1841 131 28 3 chr1 33474731 33475021 -209189332 - AluSx SINE Alu -15 297 1 2173 110 3 0 chr1 33475063 33475371 -209188982 - AluSg1 SINE Alu 0 309 1 1432 194 3 10 chr1 33475393 33475687 -209188666 + AluJb SINE Alu 7 298 -14 250 297 168 20 chr1 33475824 33475925 -209188428 - L2 LINE L2 -12 3260 3145 357 304 158 16 chr1 33476228 33476412 -209187941 - MIR SINE MIR -30 232 23 335 288 63 36 chr1 33476558 33476780 -209187573 - L2 LINE L2 -181 3091 2864 219 36 0 0 chr1 33477289 33477317 -209187036 + (GA)n Simple_repeat Simple_repeat 1 28 0 321 326 36 22 chr1 33477627 33477765 -209186588 - MIR SINE MIR -95 167 28 2173 95 0 3 chr1 33477834 33478129 -209186224 + AluSc SINE Alu 1 294 -15 1679 106 0 0 chr1 33478183 33478410 -209185943 + AluSq SINE Alu 1 227 -86 1310 158 51 22 chr1 33478410 33478683 -209185670 + L1M4 LINE L1 4169 4449 -1697 1045 180 4 44 chr1 33478687 33478830 -209185523 + AluJb SINE Alu 6 138 -174 2146 97 14 0 chr1 33478830 33479120 -209185233 + AluY SINE Alu 1 294 -17 1045 180 4 44 chr1 33479120 33479204 -209185149 + AluJb SINE Alu 138 224 -88 517 68 27 0 chr1 33479305 33479378 -209184975 - AluS SINE Alu -237 76 2 188 324 110 29 chr1 33479546 33479638 -209184715 + MIR SINE MIR 108 216 -46 1752 121 69 0 chr1 33479638 33479928 -209184425 + AluSx SINE Alu 1 310 -2 188 324 110 29 chr1 33479928 33479971 -209184382 + MIR SINE MIR 216 254 -8 244 224 102 31 chr1 33480549 33480647 -209183706 - MIR SINE MIR -69 193 89 667 254 37 26 chr1 33480982 33481171 -209183182 + MLT1L LTR MaLR 103 293 -322 279 208 0 0 chr1 33481275 33481328 -209183025 - MIR SINE MIR 0 262 210 5037 166 187 123 chr1 33481331 33481500 -209182853 - Tigger1 DNA MER2_type -1 2417 2260 207 0 0 0 chr1 33481500 33481523 -209182830 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5037 166 187 123 chr1 33481523 33481540 -209182813 - Tigger1 DNA MER2_type -158 2260 2246 1972 97 0 15 chr1 33481540 33481809 -209182544 - AluSg SINE Alu -45 265 1 5037 166 187 123 chr1 33481809 33482124 -209182229 - Tigger1 DNA MER2_type -172 2246 1953 1718 156 10 10 chr1 33482124 33482412 -209181941 + AluJo SINE Alu 2 289 -23 5037 166 187 123 chr1 33482412 33482438 -209181915 - Tigger1 DNA MER2_type -465 1953 1930 246 62 0 0 chr1 33482438 33482470 -209181883 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1643 148 53 7 chr1 33482470 33482753 -209181600 - AluJb SINE Alu -16 296 1 5037 166 187 123 chr1 33482753 33483173 -209181180 - Tigger1 DNA MER2_type -488 1930 1538 2041 113 3 3 chr1 33483173 33483466 -209180887 + AluSq SINE Alu 1 293 -20 198 0 0 0 chr1 33483466 33483488 -209180865 + (TA)n Simple_repeat Simple_repeat 2 23 0 5037 166 187 123 chr1 33483488 33483867 -209180486 - Tigger1 DNA MER2_type -880 1538 1185 1913 132 3 0 chr1 33483867 33484154 -209180199 - AluSx SINE Alu -24 288 1 2230 69 0 14 chr1 33484158 33484449 -209179904 - AluY SINE Alu -20 291 5 1317 209 21 3 chr1 33484452 33484739 -209179614 - AluJo SINE Alu -20 292 1 5037 166 187 123 chr1 33484739 33484769 -209179584 - Tigger1 DNA MER2_type -1236 1182 1155 2071 111 7 0 chr1 33484769 33485058 -209179295 - AluSx SINE Alu -21 291 1 5037 166 187 123 chr1 33485058 33485188 -209179165 - Tigger1 DNA MER2_type -1263 1155 1035 816 71 143 0 chr1 33485188 33485314 -209179039 - AluY SINE Alu 0 311 168 5037 166 187 123 chr1 33485314 33485391 -209178962 - Tigger1 DNA MER2_type -1383 1035 964 1935 119 42 0 chr1 33485391 33485677 -209178676 + AluSp SINE Alu 1 298 -15 5037 166 187 123 chr1 33485677 33486179 -209178174 - Tigger1 DNA MER2_type -1454 964 66 2315 81 0 3 chr1 33486179 33486486 -209177867 - AluSg SINE Alu -4 306 1 21 0 0 0 chr1 33486493 33486514 -209177839 + AT_rich Low_complexity Low_complexity 1 21 0 795 171 0 0 chr1 33486522 33486651 -209177702 + FLAM_C SINE Alu 1 129 -4 278 297 22 16 chr1 33486710 33486821 -209177532 - MIR SINE MIR -36 172 62 2175 101 3 3 chr1 33486931 33487238 -209177115 - AluSq SINE Alu -6 307 1 546 216 8 64 chr1 33487359 33487484 -209176869 - L2 LINE L2 -9 3304 3187 442 243 124 104 chr1 33487492 33487651 -209176702 - Charlie8 DNA MER1_type -53 288 121 2119 100 24 0 chr1 33487651 33487942 -209176411 - AluSg SINE Alu -12 298 1 442 243 124 104 chr1 33487942 33488041 -209176312 - Charlie8 DNA MER1_type -220 121 25 35 45 0 15 chr1 33488117 33488154 -209176199 + AT_rich Low_complexity Low_complexity 1 38 -28 1917 126 0 13 chr1 33488154 33488455 -209175898 - AluSx SINE Alu -15 297 1 35 45 0 15 chr1 33488455 33488484 -209175869 + AT_rich Low_complexity Low_complexity 38 66 0 1821 96 0 19 chr1 33488484 33488754 -209175599 - AluSx SINE Alu -23 289 25 1873 126 23 26 chr1 33488778 33489080 -209175273 - AluSx SINE Alu -11 301 1 417 313 116 43 chr1 33489100 33489599 -209174754 - L2 LINE L2 -692 2622 2161 2097 110 0 0 chr1 33489599 33489891 -209174462 + AluSx SINE Alu 1 292 -20 2259 92 0 13 chr1 33489900 33490216 -209174137 + AluSq SINE Alu 1 312 -1 417 313 116 43 chr1 33490216 33490291 -209174062 - L2 LINE L2 -1160 2154 1945 1869 112 11 0 chr1 33490457 33490735 -209173618 - AluSq SINE Alu -20 293 13 1070 80 0 0 chr1 33490746 33490883 -209173470 - AluSq/x SINE Alu -176 137 1 259 301 113 74 chr1 33490890 33491146 -209173207 + L2 LINE L2 2997 3262 -10 211 285 74 116 chr1 33491371 33491613 -209172740 + L2 LINE L2 2814 3045 -227 1861 94 9 94 chr1 33491819 33492148 -209172205 - AluSp SINE Alu -12 301 1 1988 129 3 0 chr1 33492151 33492445 -209171908 - AluSx SINE Alu -17 295 1 646 283 53 11 chr1 33492452 33492639 -209171714 + MIR SINE MIR 51 245 -17 25 0 0 0 chr1 33493568 33493593 -209170760 + AT_rich Low_complexity Low_complexity 1 25 0 462 301 6 32 chr1 33493931 33494087 -209170266 + MIR3 SINE MIR 16 167 -41 265 303 62 41 chr1 33494377 33494522 -209169831 + MIR SINE MIR 89 236 -26 2132 102 0 16 chr1 33494634 33494938 -209169415 - AluSx SINE Alu -13 299 1 312 225 111 13 chr1 33495297 33495411 -209168942 + MIR SINE MIR 16 153 -62 378 285 126 80 chr1 33495489 33495624 -209168729 + L2 LINE L2 2624 2751 -521 2087 119 0 0 chr1 33495624 33495917 -209168436 - AluSq SINE Alu -20 293 1 378 285 126 80 chr1 33495917 33496202 -209168151 + L2 LINE L2 2751 3022 -250 1697 86 13 0 chr1 33496202 33496436 -209167917 - L1PA5 LINE L1 0 6154 5918 1797 90 76 11 chr1 33496436 33496713 -209167640 - AluSx SINE Alu -17 295 1 378 285 126 80 chr1 33496713 33496910 -209167443 + L2 LINE L2 3021 3267 -5 2183 72 0 30 chr1 33496928 33497233 -209167120 - AluY SINE Alu -15 296 1 2140 95 0 16 chr1 33497381 33497687 -209166666 + AluSq SINE Alu 1 301 -12 926 224 44 57 chr1 33497702 33497751 -209166602 + L1ME2 LINE L1 5842 5890 -274 2179 85 41 0 chr1 33497751 33498045 -209166308 + AluY SINE Alu 1 306 -5 2141 102 0 13 chr1 33498050 33498355 -209165998 + AluSg SINE Alu 1 301 -9 926 224 44 57 chr1 33498355 33498578 -209165775 + L1ME2 LINE L1 5894 6118 -46 1849 153 3 3 chr1 33498578 33498872 -209165481 + AluJb SINE Alu 1 294 -18 926 224 44 57 chr1 33498872 33498909 -209165444 + L1ME2 LINE L1 6118 6154 -10 1577 133 0 12 chr1 33498922 33499163 -209165190 + AluSx SINE Alu 1 238 -74 1980 135 0 6 chr1 33499303 33499614 -209164739 - AluSx SINE Alu -3 309 1 1634 150 0 70 chr1 33499616 33499929 -209164424 - AluJb SINE Alu -15 297 7 789 232 87 93 chr1 33500208 33500518 -209163835 - MER102a DNA MER1_type -14 316 9 855 245 43 51 chr1 33500726 33500979 -209163374 + MIR SINE MIR 12 262 0 1595 147 8 4 chr1 33501069 33501320 -209163033 - AluJo SINE Alu -24 288 37 365 264 35 49 chr1 33501467 33501611 -209162742 + L2 LINE L2 3171 3312 -1 908 268 96 30 chr1 33501756 33502058 -209162295 + MLT1K LTR MaLR 117 438 -150 1258 106 0 11 chr1 33502060 33502273 -209162080 - AluSg/x SINE Alu 0 317 107 303 294 113 57 chr1 33502591 33502768 -209161585 + MIR SINE MIR 47 233 -29 1982 128 7 0 chr1 33502920 33503210 -209161143 - AluSx SINE Alu -20 292 1 453 289 75 11 chr1 33503268 33503455 -209160898 + L1MC4a LINE L1 5628 5809 -312 382 145 0 40 chr1 33503793 33503869 -209160484 + LTR30 LTR ERV1 552 624 -98 258 263 22 66 chr1 33503916 33503980 -209160373 + L1ME4a LINE L1 5991 6047 -74 2064 101 7 3 chr1 33503980 33504276 -209160077 - AluSc SINE Alu -12 297 1 258 263 22 66 chr1 33504276 33504348 -209160005 + L1ME4a LINE L1 6047 6121 0 2083 99 26 3 chr1 33504448 33504751 -209159602 - AluSp SINE Alu -2 311 2 1588 163 0 21 chr1 33505395 33505512 -209158841 + AluSq SINE Alu 20 138 -175 2194 93 0 31 chr1 33505512 33505834 -209158519 + AluSx SINE Alu 1 312 0 1588 163 0 21 chr1 33505834 33505999 -209158354 + AluSq SINE Alu 138 296 -17 244 182 23 0 chr1 33506029 33506073 -209158280 + MIR3 SINE MIR 134 178 -30 977 105 0 0 chr1 33506151 33506284 -209158069 - AluSq/x SINE Alu -180 133 1 770 189 13 189 chr1 33506884 33507143 -209157210 + MIR SINE MIR 10 210 -52 2438 62 3 0 chr1 33507143 33507449 -209156904 + AluSp SINE Alu 1 307 -6 770 189 13 189 chr1 33507449 33507491 -209156862 + MIR SINE MIR 210 258 -4 1636 125 61 51 chr1 33507688 33507904 -209156449 - MER2 DNA MER2_type -25 320 99 2016 99 0 19 chr1 33507904 33508216 -209156137 - AluSx SINE Alu -6 306 1 1636 125 61 51 chr1 33508216 33508311 -209156042 - MER2 DNA MER2_type -246 99 6 214 217 169 12 chr1 33509258 33509341 -209155012 - MIR SINE MIR -133 129 34 358 264 211 43 chr1 33509418 33509626 -209154727 - MIR SINE MIR -6 256 14 347 289 113 57 chr1 33509871 33510065 -209154288 - MIR SINE MIR 0 262 58 2402 98 0 13 chr1 33510179 33510494 -209153859 - AluSx SINE Alu 0 312 2 2231 114 3 16 chr1 33511059 33511365 -209152988 - AluSg SINE Alu -8 302 1 2251 120 0 0 chr1 33511365 33511664 -209152689 - AluSg SINE Alu -11 299 1 210 266 23 86 chr1 33511764 33511823 -209152530 + MIR SINE MIR 139 187 -75 2303 120 0 0 chr1 33511823 33512131 -209152222 - AluSq SINE Alu -5 308 1 210 266 23 86 chr1 33512131 33512199 -209152154 + MIR SINE MIR 187 258 -4 1818 168 3 26 chr1 33512199 33512503 -209151850 + AluJo SINE Alu 1 297 -15 2444 78 0 0 chr1 33512503 33512797 -209151556 + AluY SINE Alu 1 294 -17 2409 78 0 38 chr1 33513932 33514251 -209150102 - AluSg SINE Alu -3 307 1 224 288 168 8 chr1 33514252 33514377 -209149976 - MIR SINE MIR -46 216 72 22 70 0 0 chr1 33514908 33514951 -209149402 + GC_rich Low_complexity Low_complexity 1 43 0 213 279 7 45 chr1 33514956 33515110 -209149243 + (CGG)n Simple_repeat Simple_repeat 2 149 0 2252 91 14 3 chr1 33515214 33515501 -209148852 - AluSq SINE Alu -23 290 1 2540 65 0 3 chr1 33515630 33515936 -209148417 - AluY SINE Alu -6 305 1 532 221 326 11 chr1 33515966 33516156 -209148197 + MIR SINE MIR 13 262 0 2156 135 0 0 chr1 33516200 33516495 -209147858 + AluSx SINE Alu 1 295 -17 2422 77 3 0 chr1 33516495 33516793 -209147560 + AluSp SINE Alu 1 299 -14 2281 83 3 7 chr1 33518814 33519114 -209145239 - AluY SINE Alu -12 299 1 207 288 0 17 chr1 33519341 33519400 -209144953 + L3 LINE CR1 1517 1574 -3 1813 112 0 35 chr1 33520344 33520603 -209143750 + AluSx SINE Alu 10 259 -53 225 318 64 9 chr1 33521077 33521187 -209143166 + MIR SINE MIR 86 201 -61 * 422 241 132 61 chr1 33521184 33521396 -209142957 + MIR SINE MIR 10 236 -26 252 0 0 0 chr1 33521411 33521439 -209142914 + (TG)n Simple_repeat Simple_repeat 1 28 0 2157 111 0 0 chr1 33521439 33521718 -209142635 - AluSx SINE Alu -33 279 1 2118 114 0 38 chr1 33521727 33522042 -209142311 - AluSq SINE Alu -10 303 1 1794 98 0 4 chr1 33522045 33522270 -209142083 - AluSx SINE Alu -88 224 1 2340 106 0 0 chr1 33522375 33522676 -209141677 - AluSx SINE Alu -11 301 1 371 294 64 18 chr1 33523055 33523164 -209141189 - MIR SINE MIR -75 133 20 233 368 79 40 chr1 33523969 33524040 -209140313 - MIR3 SINE MIR -3 205 138 2169 107 13 10 chr1 33524040 33524340 -209140013 + AluSp SINE Alu 1 301 -12 233 368 79 40 chr1 33524340 33524420 -209139933 - MIR3 SINE MIR -70 138 48 462 18 0 0 chr1 33524420 33524475 -209139878 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1764 153 28 0 chr1 33524477 33524759 -209139594 - AluJb SINE Alu -22 290 1 1682 145 33 43 chr1 33524766 33525070 -209139283 - AluSg SINE Alu -9 301 1 1011 184 0 0 chr1 33525086 33525244 -209139109 + FRAM SINE Alu 1 153 -23 21 71 0 0 chr1 33525549 33525591 -209138762 + AT_rich Low_complexity Low_complexity 1 42 0 996 271 18 96 chr1 33525747 33525800 -209138553 - MLT1K LTR MaLR -111 477 421 2239 119 0 20 chr1 33525800 33526103 -209138250 + AluSg SINE Alu 1 297 -13 1483 174 40 62 chr1 33526110 33526248 -209138105 + AluJb SINE Alu 1 141 -171 2320 67 0 51 chr1 33526248 33526564 -209137789 + AluY SINE Alu 1 300 -11 1844 68 5 0 chr1 33526565 33526787 -209137566 + AluSp SINE Alu 86 308 -5 1483 174 40 62 chr1 33526787 33526950 -209137403 + AluJb SINE Alu 140 297 -15 2412 82 3 3 chr1 33526952 33527256 -209137097 + AluY SINE Alu 1 304 -7 996 271 18 96 chr1 33527256 33527276 -209137077 - MLT1K LTR MaLR -174 414 394 1238 169 209 8 chr1 33527276 33527525 -209136828 - AluJo SINE Alu -12 300 2 996 271 18 96 chr1 33527525 33527938 -209136415 - MLT1K LTR MaLR -194 394 18 1747 157 10 43 chr1 33528032 33528331 -209136022 - AluJo SINE Alu -23 289 1 2418 65 0 3 chr1 33528508 33528800 -209135553 + AluY SINE Alu 1 291 -20 1447 127 0 42 chr1 33529016 33529252 -209135101 - AluJo SINE Alu 0 312 87 240 182 280 6 chr1 33529429 33529526 -209134827 + MIR SINE MIR 32 147 -63 207 0 0 0 chr1 33529698 33529721 -209134632 + (T)n Simple_repeat Simple_repeat 1 23 0 1912 131 84 0 chr1 33529977 33530251 -209134102 + AluSx SINE Alu 1 297 -15 719 201 11 49 chr1 33530336 33530485 -209133868 + L1M4 LINE L1 4907 5046 -1100 2277 102 3 0 chr1 33530485 33530779 -209133574 + AluSq SINE Alu 1 295 -18 719 201 11 49 chr1 33530779 33530840 -209133513 + L1M4 LINE L1 5046 5108 -1038 830 103 26 0 chr1 33530840 33530956 -209133397 + FLAM_C SINE Alu 1 119 -24 27 49 0 0 chr1 33530956 33530997 -209133356 + AT_rich Low_complexity Low_complexity 1 41 0 310 262 0 87 chr1 33531037 33531140 -209133213 - L1MC4 LINE L1 -1339 6703 6610 213 175 0 0 chr1 33531149 33531189 -209133164 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 365 215 0 0 chr1 33531208 33531273 -209133080 + AluJ/FLAM SINE Alu 4 68 -234 307 182 136 0 chr1 33531307 33531373 -209132980 - tRNA-Asp-GAC tRNA tRNA 0 75 1 2193 117 0 0 chr1 33531400 33531737 -209132616 - AluSx SINE Alu 0 337 1 1641 154 46 0 chr1 33531763 33532043 -209132310 - AluJb SINE Alu 0 302 11 2505 52 0 0 chr1 33532088 33532379 -209131974 + AluY SINE Alu 1 291 -20 714 170 0 0 chr1 33532388 33532500 -209131853 - FLAM_C SINE Alu -30 113 2 2134 143 0 0 chr1 33532528 33532822 -209131531 + AluJb SINE Alu 1 294 -18 1486 203 26 32 chr1 33532865 33533176 -209131177 + AluJo SINE Alu 1 309 -3 207 0 0 0 chr1 33533310 33533333 -209131020 + (A)n Simple_repeat Simple_repeat 1 23 0 548 290 54 91 chr1 33533333 33533783 -209130570 - L2 LINE L2 -56 3216 2781 206 350 60 8 chr1 33534028 33534145 -209130208 - L2 LINE L2 -14 3258 3136 231 323 47 39 chr1 33534609 33534736 -209129617 + L2 LINE L2 3145 3272 0 612 230 24 8 chr1 33535223 33535349 -209129004 + MIR SINE MIR 21 148 -114 1852 139 0 35 chr1 33535361 33535678 -209128675 + AluSg SINE Alu 1 306 -4 2548 70 0 10 chr1 33535678 33535992 -209128361 + AluY SINE Alu 1 311 0 2288 132 0 0 chr1 33536083 33536394 -209127959 + AluSx SINE Alu 1 311 -1 1527 45 0 6 chr1 33536544 33536721 -209127632 + AluY SINE Alu 22 197 -114 1665 146 11 14 chr1 33536887 33537167 -209127186 + AluSx SINE Alu 32 310 -2 251 254 41 76 chr1 33537289 33537486 -209126867 + HAL1b LINE L1 712 901 -447 2239 114 0 3 chr1 33537851 33538141 -209126212 - AluSx SINE Alu -17 295 7 863 175 0 0 chr1 33538186 33538323 -209126030 + AluY SINE Alu 146 282 -29 270 56 0 0 chr1 33538394 33538430 -209125923 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 794 237 0 13 chr1 33538552 33538728 -209125625 - FRAM SINE Alu 0 166 1 21 36 0 0 chr1 33538803 33538831 -209125522 + AT_rich Low_complexity Low_complexity 1 28 0 221 81 0 27 chr1 33539050 33539087 -209125266 + (TA)n Simple_repeat Simple_repeat 1 36 0 782 173 119 18 chr1 33539180 33539348 -209125005 - MER5A DNA MER1_type -4 185 1 2229 112 0 13 chr1 33539407 33539710 -209124643 - AluSx SINE Alu -4 308 10 992 96 0 0 chr1 33540318 33540443 -209123910 + AluSq/x SINE Alu 1 125 -187 2206 118 0 0 chr1 33540455 33540752 -209123601 + AluSx SINE Alu 1 297 -15 1713 168 42 0 chr1 33541092 33541377 -209122976 + AluJo SINE Alu 1 297 -15 1461 195 7 22 chr1 33541466 33541591 -209122762 + AluJo SINE Alu 1 126 -186 267 54 0 0 chr1 33541591 33541628 -209122725 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1461 195 7 22 chr1 33541628 33541779 -209122574 + AluJo SINE Alu 126 273 -39 397 196 9 9 chr1 33541781 33541888 -209122465 + GA-rich Low_complexity Low_complexity 2 108 0 1946 121 15 4 chr1 33541948 33542221 -209122132 + AluSx SINE Alu 1 276 -36 2120 83 25 4 chr1 33542436 33542747 -209121606 - AluSx SINE Alu 0 317 1 2088 75 65 4 chr1 33542781 33543059 -209121294 + AluSq SINE Alu 1 295 -18 203 329 12 37 chr1 33543101 33543183 -209121170 - MIR SINE MIR -91 117 38 222 184 0 20 chr1 33543224 33543248 -209121105 + GA-rich Low_complexity Low_complexity 1 24 -24 1630 167 40 47 chr1 33543248 33543547 -209120806 + AluJb SINE Alu 1 297 -15 222 184 0 20 chr1 33543547 33543571 -209120782 + GA-rich Low_complexity Low_complexity 24 48 0 873 95 7 36 chr1 33543573 33543710 -209120643 + FLAM_C SINE Alu 1 133 0 538 269 0 8 chr1 33543771 33543890 -209120463 + L2 LINE L2 3154 3271 -1 201 114 0 29 chr1 33543932 33543967 -209120386 - MIR SINE MIR -112 150 117 825 106 8 16 chr1 33544371 33544494 -209119859 + FLAM_A SINE Alu 21 142 0 185 304 155 6 chr1 33544693 33544814 -209119539 - L2 LINE L2 -1362 1952 1800 753 159 0 38 chr1 33544814 33544946 -209119407 + FLAM_C SINE Alu 1 127 -6 185 304 155 6 chr1 33544946 33544985 -209119368 - L2 LINE L2 -1514 1800 1768 2353 103 0 3 chr1 33544985 33545286 -209119067 + AluSp SINE Alu 1 300 -13 473 314 29 58 chr1 33545290 33545532 -209118821 - L2 LINE L2 -654 2660 2426 694 183 86 20 chr1 33545570 33545767 -209118586 - MER106B DNA MER1_type -2 1057 848 2027 157 3 0 chr1 33545768 33546067 -209118286 + AluJb SINE Alu 1 300 -12 2079 110 0 0 chr1 33546076 33546348 -209118005 + AluSc SINE Alu 14 285 -24 1988 119 18 14 chr1 33546535 33546695 -209117658 - AluSq SINE Alu -15 298 135 2410 84 0 28 chr1 33546695 33547016 -209117337 - AluSx SINE Alu 0 312 1 1988 119 18 14 chr1 33547016 33547133 -209117220 - AluSq SINE Alu -178 135 20 744 110 18 0 chr1 33547777 33547886 -209116467 + AluSp SINE Alu 2 112 -201 1581 186 0 28 chr1 33548094 33548412 -209115941 + AluSg SINE Alu 1 309 -1 505 244 107 6 chr1 33548437 33548605 -209115748 - MIR SINE MIR -21 241 57 582 219 33 79 chr1 33548909 33549124 -209115229 + L2 LINE L2 3094 3298 -15 2295 108 0 0 chr1 33549181 33549476 -209114877 + AluSx SINE Alu 1 295 -17 2091 130 3 3 chr1 33549718 33550019 -209114334 - AluSx SINE Alu -11 301 1 762 125 153 23 chr1 33550021 33550237 -209114116 - MER106B DNA MER1_type -262 797 554 1150 169 51 15 chr1 33550242 33550595 -209113758 - MER106B DNA MER1_type -657 402 1 747 201 57 45 chr1 33550615 33550859 -209113494 - MER46C DNA MER2_type -33 305 59 772 181 0 0 chr1 33550942 33551058 -209113295 - FLAM_C SINE Alu -26 117 2 245 204 0 0 chr1 33551062 33551106 -209113247 - MER46C DNA MER2_type -292 46 3 2206 103 11 0 chr1 33551234 33551516 -209112837 - AluSq SINE Alu -25 288 4 259 322 161 8 chr1 33551975 33552093 -209112260 - MIR SINE MIR -57 151 16 186 43 0 0 chr1 33552803 33552826 -209111527 + (CA)n Simple_repeat Simple_repeat 2 24 0 1826 170 0 3 chr1 33553274 33553562 -209110791 - AluJo SINE Alu -25 287 1 1163 163 34 118 chr1 33553562 33553918 -209110435 + L1M4 LINE L1 4472 4797 -1349 2256 113 0 7 chr1 33553918 33554219 -209110134 + AluSx SINE Alu 1 299 -13 603 250 0 15 chr1 33554252 33554384 -209109969 + L2 LINE L2 3184 3313 0 2203 99 0 3 chr1 33554419 33554729 -209109624 - AluSx SINE Alu 0 309 1 476 183 7 120 chr1 33555248 33555390 -209108963 - Charlie8 DNA MER1_type -2218 199 74 2184 84 29 0 chr1 33555410 33555738 -209108615 - AluSg1 SINE Alu 0 336 1 2584 34 0 7 chr1 33555888 33556184 -209108169 - AluY SINE Alu -17 294 1 462 263 39 179 chr1 33556335 33556492 -209107861 - L2 LINE L2 0 3272 3095 1955 160 0 25 chr1 33556492 33556811 -209107542 - AluJb SINE Alu -1 311 1 462 263 39 179 chr1 33556811 33557171 -209107182 - L2 LINE L2 -177 3095 2828 1054 147 25 0 chr1 33557178 33557341 -209107012 + FRAM SINE Alu 1 165 -11 457 287 52 55 chr1 33557407 33557752 -209106601 - L2 LINE L2 -613 2701 2358 1856 117 29 0 chr1 33557752 33558053 -209106300 - AluSx SINE Alu 0 310 2 1953 131 0 0 chr1 33558448 33558715 -209105638 + AluSx SINE Alu 29 295 -17 1850 159 17 13 chr1 33558861 33559163 -209105190 - AluJo SINE Alu -9 303 1 366 296 15 38 chr1 33559216 33559348 -209105005 - MARNA DNA Mariner -377 209 81 503 245 53 40 chr1 33559373 33559524 -209104829 - L2 LINE L2 0 3313 3161 1201 132 12 0 chr1 33559556 33559723 -209104630 + AluSx SINE Alu 1 169 -143 506 321 87 21 chr1 33559734 33560046 -209104307 - L2 LINE L2 -189 3124 2795 223 271 143 0 chr1 33560062 33560132 -209104221 - L2 LINE L2 -623 2691 2612 877 277 61 85 chr1 33560134 33560510 -209103843 - L2 LINE L2 -8 3264 2898 2455 92 3 9 chr1 33560585 33560900 -209103453 - AluSq SINE Alu 0 313 1 1222 141 0 0 chr1 33561125 33561302 -209103051 - AluSx SINE Alu -131 181 5 2213 78 0 7 chr1 33561484 33561777 -209102576 - AluY SINE Alu -20 291 1 1743 170 0 3 chr1 33561999 33562293 -209102060 - AluJb SINE Alu -15 297 5 457 240 31 0 chr1 33562402 33562498 -209101855 - MIR SINE MIR -56 206 108 2203 73 3 52 chr1 33562499 33562826 -209101527 + AluY SINE Alu 1 311 0 186 152 61 0 chr1 33562831 33562864 -209101489 - MIR SINE MIR -142 120 86 231 171 0 0 chr1 33562988 33563023 -209101330 - MIR SINE MIR -200 62 28 1881 114 0 11 chr1 33563025 33563306 -209101047 - AluSx SINE Alu -13 299 22 24 77 0 0 chr1 33563566 33563618 -209100735 + AT_rich Low_complexity Low_complexity 1 52 0 440 296 77 30 chr1 33563819 33564052 -209100301 - MIR SINE MIR -2 260 17 1538 135 77 4 chr1 33564285 33564544 -209099809 - AluSx SINE Alu -34 278 1 724 197 0 0 chr1 33565098 33565230 -209099123 + FLAM_C SINE Alu 2 133 0 1377 330 34 21 chr1 33565315 33565873 -209098480 + ERVL LTR ERVL 4795 5359 -405 2228 97 7 0 chr1 33565908 33566207 -209098146 - AluSx SINE Alu -11 301 1 712 241 83 29 chr1 33566222 33566500 -209097853 + LTR33 LTR ERVL 227 519 -2 23 0 0 0 chr1 33566548 33566571 -209097782 + AT_rich Low_complexity Low_complexity 1 23 0 2178 118 0 0 chr1 33566574 33566879 -209097474 + AluSx SINE Alu 2 306 -6 273 130 0 0 chr1 33566906 33566952 -209097401 + FRAM/FAM SINE Alu 40 85 -90 2211 97 3 0 chr1 33567179 33567477 -209096876 - AluSg SINE Alu -11 299 1 32 43 0 0 chr1 33567477 33567523 -209096830 + AT_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr1 33567935 33567974 -209096379 + AT_rich Low_complexity Low_complexity 1 39 0 184 298 53 0 chr1 33568033 33568090 -209096263 - L2 LINE L2 -219 3053 2994 2230 77 6 26 chr1 33568091 33568403 -209095950 + AluY SINE Alu 1 306 -5 1880 72 4 12 chr1 33568522 33568773 -209095580 - AluY SINE Alu -62 249 1 182 307 40 50 chr1 33568927 33569028 -209095325 + L2 LINE L2 3166 3265 -7 715 160 13 20 chr1 33569185 33569335 -209095018 + L1MA10 LINE L1 6185 6333 -1 2300 81 3 0 chr1 33569344 33569641 -209094712 + AluSp SINE Alu 1 298 -15 194 209 127 6 chr1 33569759 33569818 -209094535 - MIR SINE MIR -116 92 34 1903 153 7 0 chr1 33570935 33571236 -209093117 + AluJo SINE Alu 1 303 -9 426 301 44 12 chr1 33571259 33571447 -209092906 + MIR SINE MIR 20 212 -50 1906 122 37 0 chr1 33572661 33572956 -209091397 - AluSg SINE Alu -4 306 1 183 129 0 0 chr1 33572984 33573015 -209091338 + (T)n Simple_repeat Simple_repeat 1 31 0 2196 84 10 0 chr1 33574250 33574547 -209089806 + AluSp SINE Alu 1 300 -13 2167 76 0 14 chr1 33574665 33574953 -209089400 + AluY SINE Alu 1 284 -27 2085 73 11 4 chr1 33575053 33575326 -209089027 - AluY SINE Alu -36 275 1 369 250 19 135 chr1 33575487 33575535 -209088818 + MIR SINE MIR 64 116 -146 2931 156 30 39 chr1 33575535 33576094 -209088259 - MLT2B3 LTR ERVL 0 554 1 369 250 19 135 chr1 33576094 33576136 -209088217 + MIR SINE MIR 116 161 -101 2199 69 0 10 chr1 33576136 33576448 -209087905 + AluSg SINE Alu 1 310 0 369 250 19 135 chr1 33576448 33576564 -209087789 + MIR SINE MIR 161 247 -15 2096 107 13 0 chr1 33576815 33577114 -209087239 + AluSg1 SINE Alu 6 308 -1 199 295 27 45 chr1 33577150 33577262 -209087091 - L2 LINE L2 -1 3312 3203 467 311 37 0 chr1 33577480 33577615 -209086738 + L2 LINE L2 2221 2360 -954 2077 111 0 3 chr1 33578070 33578390 -209085963 + AluSx SINE Alu 2 312 0 1217 104 0 0 chr1 33578390 33578553 -209085800 + AluSq SINE Alu 134 296 -17 1899 102 29 0 chr1 33578559 33578861 -209085492 + AluSx SINE Alu 1 310 0 442 287 52 55 chr1 33578861 33579206 -209085147 + L2 LINE L2 2358 2701 -613 973 147 25 0 chr1 33579272 33579435 -209084918 - FRAM SINE Alu -11 165 1 1842 152 0 26 chr1 33579803 33580112 -209084241 + AluJb SINE Alu 1 301 -11 415 338 61 0 chr1 33580132 33580280 -209084073 + L2 LINE L2 3116 3272 0 2449 34 0 7 chr1 33580431 33580727 -209083626 + AluY SINE Alu 1 294 -17 2010 85 33 0 chr1 33580877 33581204 -209083149 + AluSg1 SINE Alu 1 336 0 515 166 26 113 chr1 33581218 33581369 -209082984 + Charlie8 DNA MER1_type 62 199 -2218 2068 99 0 3 chr1 33581888 33582198 -209082155 + AluSx SINE Alu 1 309 0 603 250 0 15 chr1 33582233 33582365 -209081988 - L2 LINE L2 0 3313 3184 1762 123 41 7 chr1 33582394 33582687 -209081666 - AluSx SINE Alu -8 304 2 2502 43 0 3 chr1 33583422 33583725 -209080628 + AluY SINE Alu 1 302 -9 1463 158 11 15 chr1 33583735 33583995 -209080358 + AluJo SINE Alu 1 259 -53 21 0 0 0 chr1 33584016 33584037 -209080316 + AT_rich Low_complexity Low_complexity 1 21 0 674 225 71 12 chr1 33584086 33584255 -209080098 + MIR SINE MIR 72 250 -12 2125 71 0 49 chr1 33584271 33584611 -209079742 - AluY SINE Alu 0 325 1 183 305 124 56 chr1 33584703 33584936 -209079417 - L2 LINE L2 -349 2965 2717 1795 127 29 4 chr1 33585327 33585603 -209078750 + AluSx SINE Alu 16 298 -14 496 211 0 11 chr1 33586900 33586990 -209077363 - FLAM_A SINE Alu -48 94 6 2151 82 21 7 chr1 33588273 33588564 -209075789 + AluSq SINE Alu 1 295 -18 2217 105 0 0 chr1 33589725 33590030 -209074323 - AluSg SINE Alu -5 305 1 329 301 131 13 chr1 33593123 33593276 -209071077 - MIR SINE MIR -75 187 17 241 104 83 0 chr1 33593595 33593643 -209070710 - L1MA9 LINE L1 -35 6277 6226 2018 118 0 16 chr1 33594058 33594363 -209069990 - AluSx SINE Alu -6 306 7 1031 154 6 22 chr1 33594376 33594558 -209069795 - AluJ SINE Alu 0 312 134 186 43 0 0 chr1 33594558 33594581 -209069772 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2061 90 7 4 chr1 33594586 33594863 -209069490 - AluSc SINE Alu -31 278 1 30 0 0 0 chr1 33594863 33594893 -209069460 + AT_rich Low_complexity Low_complexity 1 30 0 2240 105 0 0 chr1 33595051 33595356 -209068997 - AluSx SINE Alu -6 306 2 816 145 0 0 chr1 33595362 33595486 -209068867 - AluJ SINE Alu -183 129 6 27 0 0 0 chr1 33597814 33597841 -209066512 + AT_rich Low_complexity Low_complexity 1 27 0 2132 99 7 0 chr1 33598380 33598682 -209065671 + AluSg SINE Alu 1 304 -6 30 0 0 0 chr1 33598839 33598869 -209065484 + AT_rich Low_complexity Low_complexity 1 30 0 2136 106 7 3 chr1 33598869 33599170 -209065183 + AluSc SINE Alu 1 302 -7 237 71 143 0 chr1 33599272 33599314 -209065039 + Alu SINE Alu 255 302 0 2173 81 11 0 chr1 33599342 33599626 -209064727 - AluSp SINE Alu -26 287 1 886 105 0 0 chr1 33599626 33599759 -209064594 - AluSg/x SINE Alu -6 306 174 891 179 61 30 chr1 33599759 33599840 -209064513 - MER33 DNA MER1_type -88 74 1 1420 144 12 102 chr1 33599840 33600174 -209064179 - AluJb SINE Alu -8 304 1 1860 167 0 0 chr1 33600178 33600484 -209063869 - AluJb SINE Alu -6 306 1 891 179 61 30 chr1 33600484 33600633 -209063720 - MER33 DNA MER1_type -167 4294967291 1 2436 67 0 0 chr1 33601202 33601500 -209062853 - AluSx SINE Alu -14 298 1 2083 94 0 7 chr1 33601772 33602060 -209062293 + AluSg SINE Alu 1 286 -24 2296 39 0 7 chr1 33602067 33602372 -209061981 + AluY SINE Alu 1 303 0 2057 93 0 81 chr1 33602382 33602716 -209061637 + AluSx SINE Alu 1 307 -5 1793 134 72 0 chr1 33602861 33603153 -209061200 + AluSq SINE Alu 1 313 0 457 268 0 0 chr1 33603169 33603292 -209061061 + L1ME3A LINE L1 5807 5929 -241 1879 140 7 0 chr1 33603354 33603662 -209060691 - AluSg SINE Alu 0 310 1 194 0 39 0 chr1 33603672 33603698 -209060655 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2565 170 127 75 chr1 33603699 33603722 -209060631 + L1MD2 LINE L1 5591 5611 -748 1289 134 95 141 chr1 33603722 33604028 -209060325 + AluJo SINE Alu 1 292 -10 2565 170 127 75 chr1 33604028 33604720 -209059633 + L1MD2 LINE L1 5611 6343 -16 1909 119 0 102 chr1 33605210 33605545 -209058808 - AluSx SINE Alu 0 302 2 1614 77 39 166 chr1 33605551 33605888 -209058465 - AluSc SINE Alu -11 298 5 2152 84 0 14 chr1 33606203 33606499 -209057854 + AluSc SINE Alu 1 292 -17 270 330 23 0 chr1 33606671 33606759 -209057594 - MIR SINE MIR -170 92 3 474 286 176 6 chr1 33606903 33607085 -209057268 + MIR SINE MIR 47 259 -3 2328 62 0 7 chr1 33607566 33607858 -209056495 + AluSx SINE Alu 1 290 -22 273 217 29 14 chr1 33608100 33608169 -209056184 + MIR SINE MIR 74 143 -65 2117 126 0 7 chr1 33608180 33608490 -209055863 + AluSx SINE Alu 5 312 0 1769 179 0 3 chr1 33608509 33608810 -209055543 + AluJb SINE Alu 1 300 -12 270 184 70 140 chr1 33609455 33609569 -209054784 - L2 LINE L2 -3 3269 3164 621 268 34 60 chr1 33609588 33609823 -209054530 - MIR SINE MIR -3 259 31 1551 135 22 93 chr1 33609885 33610027 -209054326 + AluJb SINE Alu 7 117 -195 2539 45 0 3 chr1 33610027 33610339 -209054014 + AluY SINE Alu 1 311 0 1551 135 22 93 chr1 33610339 33610507 -209053846 + AluJb SINE Alu 117 295 -17 203 229 300 0 chr1 33610590 33610660 -209053693 - L2 LINE L2 -12 3301 3211 2083 113 24 0 chr1 33610920 33611211 -209053142 - AluSg SINE Alu -12 298 1 684 121 0 0 chr1 33611226 33611317 -209053036 + AluSg/x SINE Alu 205 295 -15 288 263 12 25 chr1 33611354 33611434 -209052919 + MIR SINE MIR 78 156 -106 494 197 0 117 chr1 33611478 33611535 -209052818 + MIR SINE MIR 14 47 -215 1613 187 27 10 chr1 33611535 33611834 -209052519 + AluJo SINE Alu 1 304 -8 494 197 0 117 chr1 33611834 33611913 -209052440 + MIR SINE MIR 47 134 -128 2293 89 0 3 chr1 33612540 33612842 -209051511 - AluY SINE Alu -10 301 1 232 244 116 23 chr1 33616598 33616684 -209047669 - LTR67 LTR ERVL 0 557 464 254 192 110 27 chr1 33616904 33616977 -209047376 - MLT1K LTR MaLR -507 81 3 398 275 94 0 chr1 33616978 33617116 -209047237 - MIR SINE MIR -111 151 1 2220 108 3 10 chr1 33617155 33617469 -209046884 - AluSx SINE Alu 0 312 1 2177 124 0 3 chr1 33618115 33618414 -209045939 - AluSx SINE Alu -14 298 1 262 294 56 24 chr1 33618445 33618571 -209045782 + MIR SINE MIR 31 160 -102 1630 168 58 9 chr1 33618654 33618981 -209045372 - L1MB7 LINE L1 -20 6164 5822 307 326 104 0 chr1 33618982 33619117 -209045236 - L3 LINE CR1 -128 1449 1301 1330 191 19 27 chr1 33619180 33619442 -209044911 + AluJo SINE Alu 1 260 -52 304 296 11 34 chr1 33619443 33619531 -209044822 - Charlie8 DNA MER1_type -2331 86 1 3363 170 51 59 chr1 33619639 33619998 -209044355 - L1MB8 LINE L1 -1 6183 5823 2034 116 19 19 chr1 33619998 33620309 -209044044 - AluSx SINE Alu -1 311 1 3363 170 51 59 chr1 33620309 33620603 -209043750 - L1MB8 LINE L1 -361 5823 5528 2431 80 0 13 chr1 33620603 33620916 -209043437 - AluY SINE Alu -2 309 1 3363 170 51 59 chr1 33620916 33621436 -209042917 - L1MB8 LINE L1 -656 5528 5005 1832 160 0 22 chr1 33621436 33621775 -209042578 - AluSx SINE Alu 0 312 1 3363 170 51 59 chr1 33621775 33621855 -209042498 - L1MB8 LINE L1 -1179 5005 4926 2323 74 0 24 chr1 33621855 33622153 -209042200 - AluSx SINE Alu -21 291 1 3363 170 51 59 chr1 33622153 33622275 -209042078 - L1MB8 LINE L1 -1258 4926 4835 257 291 38 13 chr1 33622387 33622466 -209041887 - MIR SINE MIR -180 82 2 275 277 15 22 chr1 33623066 33623157 -209041196 - MIR SINE MIR -61 147 66 196 29 0 57 chr1 33623280 33623315 -209041038 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 225 79 53 0 chr1 33623315 33623353 -209041000 - HsTC2 DNA Tc2 -66 1832 1793 2470 70 0 0 chr1 33623354 33623652 -209040701 - AluY SINE Alu -13 298 1 254 175 70 0 chr1 33623775 33623832 -209040521 - MIR SINE MIR -96 166 106 1560 154 70 15 chr1 33623838 33624111 -209040242 + AluJo SINE Alu 1 288 -24 24 0 0 0 chr1 33624120 33624144 -209040209 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 33624340 33624363 -209039990 + AT_rich Low_complexity Low_complexity 1 23 0 1375 174 78 4 chr1 33624364 33624622 -209039731 - AluJo SINE Alu -31 281 5 434 259 74 22 chr1 33624662 33624755 -209039598 + MIR SINE MIR 117 221 -41 2166 88 35 3 chr1 33624755 33625038 -209039315 + AluSp SINE Alu 1 292 -21 434 259 74 22 chr1 33625038 33625079 -209039274 + MIR SINE MIR 221 258 -4 1247 105 189 0 chr1 33625639 33625830 -209038523 - MER30 DNA MER1_type 0 230 4 249 153 139 28 chr1 33625838 33625910 -209038443 - MIR SINE MIR -58 204 125 2304 86 0 3 chr1 33626121 33626413 -209037940 + AluSg SINE Alu 1 291 -19 588 243 166 77 chr1 33627769 33628131 -209036222 - L2 LINE L2 -4 3309 2916 1223 225 48 10 chr1 33628135 33628424 -209035929 - AluJb SINE Alu -12 300 1 219 69 0 0 chr1 33628430 33628459 -209035894 + (T)n Simple_repeat Simple_repeat 1 29 0 2428 41 10 3 chr1 33628473 33628764 -209035589 + AluY SINE Alu 1 293 -18 1867 109 0 11 chr1 33628788 33629053 -209035300 + AluSq SINE Alu 1 262 -51 1161 192 18 9 chr1 33629184 33629403 -209034950 - AluJb SINE Alu -91 221 1 289 298 64 35 chr1 33629502 33629673 -209034680 + L2 LINE L2 2158 2333 -981 541 281 48 30 chr1 33629701 33629868 -209034485 - MLT1K LTR MaLR -292 296 127 33 25 0 0 chr1 33629986 33630026 -209034327 + GC_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr1 33630093 33630118 -209034235 + GC_rich Low_complexity Low_complexity 1 25 0 230 293 6 44 chr1 33630181 33630362 -209033991 + G-rich Low_complexity Low_complexity 4 177 0 279 30 0 0 chr1 33631463 33631496 -209032857 - U2 snRNA snRNA -155 33 1 249 78 0 59 chr1 33631545 33631596 -209032757 - AluSx SINE Alu 0 303 256 1482 115 0 5 chr1 33631596 33631796 -209032557 - AluSx SINE Alu -98 214 16 1477 143 26 4 chr1 33631878 33632108 -209032245 + AluJb SINE Alu 1 235 -77 388 250 40 81 chr1 33632331 33632479 -209031874 - MIR SINE MIR -118 144 3 2202 101 10 3 chr1 33633683 33633989 -209030364 - AluSq SINE Alu -5 308 1 208 211 141 0 chr1 33634125 33634196 -209030157 - MIR SINE MIR -60 202 122 1679 141 44 11 chr1 33634221 33634491 -209029862 - AluSx SINE Alu -7 305 27 1657 155 8 0 chr1 33634701 33634966 -209029387 + AluJb SINE Alu 35 301 -11 2449 50 7 7 chr1 33637612 33637910 -209026443 - AluY SINE Alu -13 298 1 2305 109 10 0 chr1 33639246 33639549 -209024804 - AluSx SINE Alu -6 306 1 227 71 91 40 chr1 33639687 33639786 -209024567 + (TTATA)n Simple_repeat Simple_repeat 5 108 0 28 0 0 0 chr1 33639791 33639819 -209024534 + AT_rich Low_complexity Low_complexity 1 28 0 1015 268 175 39 chr1 33640211 33640427 -209023926 + L2 LINE L2 2462 2647 -666 2536 102 0 38 chr1 33640427 33640799 -209023554 - L1PA15 LINE L1 0 6165 5808 1015 268 175 39 chr1 33640799 33641327 -209023026 + L2 LINE L2 2647 3313 0 183 42 0 0 chr1 33641793 33641817 -209022536 + (TA)n Simple_repeat Simple_repeat 2 25 0 2017 106 53 7 chr1 33641817 33642100 -209022253 - AluSc SINE Alu -10 299 4 2293 67 0 20 chr1 33642195 33642494 -209021859 - AluY SINE Alu -18 293 1 272 289 44 9 chr1 33642940 33643054 -209021299 - L1MC4a LINE L1 -1895 5913 5796 1772 126 3 69 chr1 33644136 33644333 -209020020 + AluJo SINE Alu 1 171 -141 2839 10 0 0 chr1 33644333 33644637 -209019716 + AluY SINE Alu 1 304 -7 1772 126 3 69 chr1 33644637 33644756 -209019597 + AluJo SINE Alu 171 296 -16 1975 111 75 0 chr1 33644758 33645038 -209019315 + AluSg SINE Alu 1 301 -9 1718 153 28 0 chr1 33645045 33645384 -209018969 + AluJb SINE Alu 1 347 0 240 338 0 13 chr1 33645384 33645461 -209018892 + MIR SINE MIR 48 123 -85 2158 104 14 0 chr1 33645475 33645764 -209018589 - AluSp SINE Alu -20 293 1 376 294 64 18 chr1 33646640 33646749 -209017604 + MIR SINE MIR 20 133 -75 2340 103 0 0 chr1 33647129 33647430 -209016923 + AluSx SINE Alu 1 301 -11 2361 105 3 0 chr1 33647500 33647805 -209016548 - AluSp SINE Alu -7 306 1 2403 95 3 0 chr1 33647816 33648122 -209016231 - AluSp SINE Alu -6 307 1 466 257 74 20 chr1 33649352 33649500 -209014853 - MIR SINE MIR -84 178 23 2269 81 10 0 chr1 33649703 33649998 -209014355 - AluY SINE Alu -13 298 1 2128 73 91 0 chr1 33649999 33650273 -209014080 - AluSc SINE Alu -10 299 1 324 179 35 14 chr1 33650353 33650435 -209013918 - MIR SINE MIR -64 144 84 726 256 47 35 chr1 33651211 33651510 -209012843 - L1MC4a LINE L1 -298 5823 5520 2465 78 0 3 chr1 33651594 33651903 -209012450 - AluSg SINE Alu -2 308 1 24 0 0 0 chr1 33651954 33651978 -209012375 + AT_rich Low_complexity Low_complexity 1 24 0 1539 208 44 7 chr1 33652140 33652438 -209011915 + AluJb SINE Alu 1 309 -3 1060 174 12 0 chr1 33652444 33652611 -209011742 + AluJb SINE Alu 133 301 -11 1657 168 25 4 chr1 33653602 33653876 -209010477 + AluJb SINE Alu 1 280 -32 2017 68 0 8 chr1 33654305 33654568 -209009785 + L1P5 LINE L1 5410 5670 -481 201 74 0 0 chr1 33654569 33654596 -209009757 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1759 136 3 58 chr1 33657371 33657681 -209006672 + AluJb SINE Alu 1 293 -19 2400 68 7 3 chr1 33658281 33658573 -209005780 - AluSc SINE Alu -16 293 1 208 135 0 0 chr1 33659714 33659751 -209004602 + (A)n Simple_repeat Simple_repeat 1 37 0 766 0 21 0 chr1 33659759 33659853 -209004500 + (TA)n Simple_repeat Simple_repeat 2 97 0 438 20 0 0 chr1 33661179 33661230 -209003123 + (TG)n Simple_repeat Simple_repeat 1 51 0 1680 173 20 23 chr1 33661607 33661914 -209002439 + AluJb SINE Alu 1 300 -12 361 253 0 22 chr1 33662158 33662249 -209002104 - FAM SINE Alu -5 170 82 901 184 10 46 chr1 33662571 33662767 -209001586 + AluJb SINE Alu 86 274 -38 1678 248 224 51 chr1 33662776 33663016 -209001337 + L2 LINE L2 949 1146 -2168 898 183 12 18 chr1 33663016 33663180 -209001173 + FAM SINE Alu 2 164 -11 1678 248 224 51 chr1 33663180 33663407 -209000946 + L2 LINE L2 1146 1332 -1982 2214 94 7 0 chr1 33663407 33663704 -209000649 - AluSg SINE Alu -11 299 1 1678 248 224 51 chr1 33663704 33664048 -209000305 + L2 LINE L2 1332 1615 -1699 1823 128 44 3 chr1 33664048 33664345 -209000008 + AluSx SINE Alu 1 309 -3 1678 248 224 51 chr1 33664345 33664374 -208999979 + L2 LINE L2 1615 1937 -1377 871 160 60 0 chr1 33664378 33664528 -208999825 - FRAM SINE Alu -22 154 1 213 36 0 0 chr1 33664532 33664538 -208999815 + (T)n Simple_repeat Simple_repeat 1 6 -22 1670 96 167 0 chr1 33664538 33664789 -208999564 + AluSx SINE Alu 1 293 -9 213 36 0 0 chr1 33664789 33664810 -208999543 + (T)n Simple_repeat Simple_repeat 5 28 0 2174 92 0 0 chr1 33664833 33665136 -208999217 - AluSx SINE Alu 0 303 1 581 211 0 0 chr1 33665144 33665248 -208999105 - FLAM_C SINE Alu -35 108 5 228 188 145 29 chr1 33665250 33665319 -208999034 + L2 LINE L2 1940 2016 -1298 1769 180 109 33 chr1 33665351 33665802 -208998551 + MLT1D LTR MaLR 21 505 0 243 288 80 8 chr1 33665806 33665931 -208998422 + L2 LINE L2 2014 2147 -1167 612 282 208 20 chr1 33665995 33666101 -208998252 + L2 LINE L2 3008 3093 -220 2162 97 19 13 chr1 33666101 33666411 -208997942 - AluSp SINE Alu -1 312 1 612 282 208 20 chr1 33666411 33666559 -208997794 + L2 LINE L2 3093 3310 -3 1173 152 24 80 chr1 33666696 33666946 -208997407 + L1MB5 LINE L1 5433 5668 -516 573 209 2 36 chr1 33666967 33667111 -208997242 + L1MB5 LINE L1 6022 6144 -27 234 193 0 53 chr1 33667270 33667327 -208997026 + MLT1K LTR MaLR 182 235 -353 2131 118 0 0 chr1 33667348 33667645 -208996708 - AluSx SINE Alu -15 297 1 511 262 43 28 chr1 33668024 33668165 -208996188 - L2 LINE L2 -33 3280 3138 1105 150 0 0 chr1 33668165 33668332 -208996021 + AluJb SINE Alu 59 225 -87 270 290 30 20 chr1 33668363 33668463 -208995890 + MER5B DNA MER1_type 7 107 -71 2397 74 3 0 chr1 33668829 33669139 -208995214 - AluY SINE Alu 0 311 1 347 252 222 63 chr1 33669389 33669569 -208994784 - MIR SINE MIR 0 262 46 2136 109 6 3 chr1 33669569 33669881 -208994472 + AluSq SINE Alu 1 313 0 347 252 222 63 chr1 33669881 33669932 -208994421 - MIR SINE MIR -216 46 4 2137 106 0 0 chr1 33671191 33671484 -208992869 - AluSg SINE Alu -13 297 5 1914 141 0 3 chr1 33671523 33671813 -208992540 - AluSx SINE Alu -23 289 1 5423 154 24 24 chr1 33671813 33672463 -208991890 - L1PA16 LINE L1 -195 5971 5323 1895 161 0 0 chr1 33672463 33672767 -208991586 - AluJo SINE Alu -8 304 1 5423 154 24 24 chr1 33672767 33673931 -208990422 - L1PA16 LINE L1 -843 5323 4150 2397 60 0 3 chr1 33673940 33674241 -208990112 - AluY SINE Alu -11 300 1 471 288 50 0 chr1 33674290 33674429 -208989924 - MIR SINE MIR -113 149 4 286 290 138 22 chr1 33674470 33674608 -208989745 + L2 LINE L2 353 506 -2808 317 304 0 0 chr1 33674900 33674992 -208989361 + (TA)n Simple_repeat Simple_repeat 2 93 0 3386 163 94 71 chr1 33674992 33675332 -208989021 + MER63C DNA MER1_type 49 380 -680 1437 198 29 0 chr1 33675332 33675605 -208988748 - AluJo SINE Alu -31 281 1 3386 163 94 71 chr1 33675605 33676041 -208988312 + MER63C DNA MER1_type 380 848 -212 2212 99 3 0 chr1 33676041 33676334 -208988019 + AluSp SINE Alu 1 294 -19 3386 163 94 71 chr1 33676334 33676410 -208987943 + MER63C DNA MER1_type 848 921 -9 803 275 45 75 chr1 33676548 33676973 -208987380 + L2 LINE L2 2053 2464 -850 1875 123 7 7 chr1 33676979 33677272 -208987081 - AluJb SINE Alu -15 297 5 1418 171 0 4 chr1 33677273 33677518 -208986835 - AluJb SINE Alu -64 248 5 520 221 0 25 chr1 33677618 33677740 -208986613 + MIR SINE MIR 4 122 -140 1629 107 9 0 chr1 33677743 33677967 -208986386 - AluSg/x SINE Alu -16 296 71 1126 137 0 33 chr1 33677974 33678138 -208986215 - MLT1C LTR MaLR -291 176 17 2045 135 96 3 chr1 33678138 33678472 -208985881 + MLT1A1 LTR MaLR 1 365 0 1126 137 0 33 chr1 33678472 33678489 -208985864 - MLT1C LTR MaLR -450 17 1 269 282 97 10 chr1 33678620 33678723 -208985630 + L2 LINE L2 2618 2729 -585 2264 91 3 10 chr1 33678855 33679163 -208985190 - AluSq SINE Alu -2 311 6 24 0 0 0 chr1 33679166 33679190 -208985163 + AT_rich Low_complexity Low_complexity 1 24 0 4327 141 48 68 chr1 33679201 33679592 -208984761 + L1MB5 LINE L1 5283 5680 -494 2266 80 7 0 chr1 33679592 33679893 -208984460 + AluSp SINE Alu 11 313 0 4327 141 48 68 chr1 33679893 33680033 -208984320 + L1MB5 LINE L1 5680 5821 -353 2200 104 0 13 chr1 33680033 33680340 -208984013 + AluSx SINE Alu 1 303 -9 4327 141 48 68 chr1 33680340 33680709 -208983644 + L1MB5 LINE L1 5821 6166 -8 2094 138 11 28 chr1 33680722 33681083 -208983270 + L1MB5 LINE L1 5812 6166 -8 305 333 52 22 chr1 33681089 33681224 -208983129 - L1ME LINE L1 -460 5661 5523 2169 97 7 0 chr1 33681275 33681583 -208982770 + AluSx SINE Alu 1 310 -2 244 171 53 40 chr1 33681740 33681816 -208982537 - MER20B DNA MER1_type -30 753 677 699 261 78 23 chr1 33681824 33682042 -208982311 + MIR SINE MIR 5 234 -28 768 220 101 10 chr1 33682044 33682253 -208982100 - MER20B DNA MER1_type -143 640 413 1994 104 0 0 chr1 33682253 33682522 -208981831 - AluSx SINE Alu -43 269 1 555 254 69 0 chr1 33682557 33682687 -208981666 - MER20B DNA MER1_type -549 234 96 1553 159 0 39 chr1 33682838 33683121 -208981232 - AluJo SINE Alu -40 272 1 679 240 162 44 chr1 33683289 33683454 -208980899 + L2 LINE L2 2555 2699 -614 2311 68 3 0 chr1 33683454 33683746 -208980607 + AluSp SINE Alu 1 293 -20 679 240 162 44 chr1 33683746 33684117 -208980236 + L2 LINE L2 2699 3146 -167 1862 144 3 16 chr1 33684285 33684598 -208979755 + AluJb SINE Alu 1 309 -3 464 219 21 0 chr1 33684600 33684696 -208979657 - L1ME2 LINE L1 -43 6121 6024 2297 210 14 54 chr1 33684760 33685004 -208979349 - L1ME1 LINE L1 -5 6161 5909 2497 56 0 3 chr1 33685004 33685309 -208979044 - AluY SINE Alu -7 304 1 2297 210 14 54 chr1 33685309 33685640 -208978713 - L1ME1 LINE L1 -257 5909 5609 2318 86 0 0 chr1 33685647 33685948 -208978405 - AluSg SINE Alu -7 303 3 247 253 27 131 chr1 33686558 33686855 -208977498 - L1MC4a LINE L1 -1755 6053 5788 289 266 127 81 chr1 33687060 33687233 -208977120 - MER5A DNA MER1_type -2 187 7 235 150 33 0 chr1 33687423 33687483 -208976870 + CT-rich Low_complexity Low_complexity 1 62 0 296 290 234 0 chr1 33687661 33687785 -208976568 - MIR SINE MIR -24 238 86 2036 103 43 0 chr1 33687865 33688147 -208976206 - AluSg SINE Alu -15 295 2 287 281 65 29 chr1 33688180 33688319 -208976034 - HAL1b LINE L1 -13 1335 1192 1855 131 0 10 chr1 33688376 33688667 -208975686 - AluSx SINE Alu -24 288 1 605 206 45 81 chr1 33688677 33688839 -208975514 - L1ME2 LINE L1 -189 5932 5781 1821 136 34 14 chr1 33688839 33689133 -208975220 - AluSx SINE Alu -12 300 1 605 206 45 81 chr1 33689133 33689217 -208975136 - L1ME2 LINE L1 -340 5781 5695 874 283 26 4 chr1 33689231 33689457 -208974896 - MIR SINE MIR -12 250 20 967 216 108 4 chr1 33690024 33690274 -208974079 - LTR16C LTR ERVL -14 477 202 1318 172 0 117 chr1 33690314 33690467 -208973886 + AluJb SINE Alu 2 95 -217 327 49 0 0 chr1 33690467 33690508 -208973845 + (CA)n Simple_repeat Simple_repeat 2 42 0 1318 172 0 117 chr1 33690508 33690697 -208973656 + AluJb SINE Alu 95 304 -8 2175 112 0 3 chr1 33690722 33691034 -208973319 + AluSx SINE Alu 1 311 -1 1056 260 46 72 chr1 33691544 33692055 -208972298 - L1MEc LINE L1 -3191 3024 2533 1866 126 0 52 chr1 33692055 33692381 -208971972 + AluSq SINE Alu 1 309 -4 1056 260 46 72 chr1 33692381 33692527 -208971826 - L1MEc LINE L1 -3682 2533 2385 1403 211 71 50 chr1 33692557 33692936 -208971417 + MSTD LTR MaLR 1 387 -9 316 210 25 136 chr1 33692937 33692980 -208971373 - L1MEc LINE L1 -3840 2375 2329 1458 171 10 45 chr1 33692980 33693289 -208971064 - AluJb SINE Alu -8 304 7 316 210 25 136 chr1 33693289 33693407 -208970946 - L1MEc LINE L1 -3886 2329 2232 1771 143 14 0 chr1 33693476 33693783 -208970570 + AluSq SINE Alu 1 311 0 1891 152 0 10 chr1 33693796 33693974 -208970379 - AluJb SINE Alu -1 311 136 2117 95 0 10 chr1 33693974 33694269 -208970084 - AluSc SINE Alu -17 292 1 1891 152 0 10 chr1 33694269 33694400 -208969953 - AluJb SINE Alu -176 136 5 377 273 0 58 chr1 33694408 33694529 -208969824 - L1MEc LINE L1 -4653 1743 1630 490 110 0 0 chr1 33694531 33694624 -208969729 + L1MEc LINE L1 1859 1935 -4605 998 297 90 41 chr1 33694635 33694914 -208969439 + L2 LINE L2 2352 2616 -697 1654 157 3 20 chr1 33694914 33695219 -208969134 - AluJb SINE Alu -12 300 1 998 297 90 41 chr1 33695219 33695241 -208969112 + L2 LINE L2 2616 2635 -678 1520 111 4 45 chr1 33695241 33695522 -208968831 - AluSg SINE Alu 0 319 49 998 297 90 41 chr1 33695522 33695598 -208968755 + L2 LINE L2 2635 2706 -607 2212 104 0 0 chr1 33695598 33695905 -208968448 + AluSx SINE Alu 1 307 -5 998 297 90 41 chr1 33695905 33696211 -208968142 + L2 LINE L2 2706 3083 -230 1183 102 0 18 chr1 33696211 33696378 -208967975 - AluSg/x SINE Alu -15 295 132 2178 99 0 10 chr1 33696379 33696673 -208967680 - AluSx SINE Alu -20 292 2 493 263 189 6 chr1 33696697 33696872 -208967481 + L2 LINE L2 3107 3313 0 576 244 37 30 chr1 33697081 33697245 -208967108 - MER63A DNA MER1_type -1 209 45 1518 188 0 41 chr1 33697582 33697756 -208966597 - AluJo SINE Alu -4 308 151 1836 154 27 0 chr1 33697756 33698049 -208966304 - AluSx SINE Alu -11 301 1 1518 188 0 41 chr1 33698049 33698193 -208966160 - AluJo SINE Alu -161 151 3 377 183 0 0 chr1 33698470 33698530 -208965823 + MER63 DNA MER1_type 679 738 -322 360 253 133 42 chr1 33698833 33698999 -208965354 + MIR SINE MIR 46 226 -36 270 276 99 75 chr1 33699003 33699297 -208965056 - L1ME LINE L1 -466 5655 5355 2279 85 0 3 chr1 33699302 33699596 -208964757 - AluSq SINE Alu -20 293 1 318 291 205 25 chr1 33699665 33700334 -208964019 - L2 LINE L2 -713 2601 1813 1962 128 0 10 chr1 33700471 33700776 -208963577 - AluJo SINE Alu -10 302 1 352 155 17 0 chr1 33700899 33700957 -208963396 + MER53 DNA DNA 1 59 -130 3265 167 42 32 chr1 33700957 33701563 -208962790 - MER49 LTR ERV1 0 923 309 1571 130 37 83 chr1 33701563 33701887 -208962466 - AluSg SINE Alu -1 309 1 3265 167 42 32 chr1 33701887 33701902 -208962451 - MER49 LTR ERV1 -614 309 296 800 141 0 90 chr1 33701902 33702058 -208962295 - FLAM_C SINE Alu 0 143 2 1573 172 0 86 chr1 33702059 33702194 -208962159 - MER49 LTR ERV1 -611 312 167 1799 130 0 7 chr1 33702194 33702464 -208961889 - AluSx SINE Alu -40 272 5 1573 172 0 86 chr1 33702464 33702665 -208961688 - MER49 LTR ERV1 -756 167 5 280 227 0 0 chr1 33702669 33702735 -208961618 + MER53 DNA DNA 56 121 -68 427 312 84 30 chr1 33702789 33702865 -208961488 - L1ME LINE L1 -1113 5033 4963 2103 107 0 10 chr1 33702865 33703173 -208961180 - AluSx SINE Alu -7 305 1 427 312 84 30 chr1 33703173 33703333 -208961020 - L1ME LINE L1 -1183 4963 4784 2179 225 43 47 chr1 33703334 33703886 -208960467 + MER74B LTR ERVL 55 604 -18 414 57 0 0 chr1 33703892 33703945 -208960408 + (TA)n Simple_repeat Simple_repeat 1 53 0 1955 122 3 0 chr1 33703957 33704245 -208960108 - AluSx SINE Alu -23 289 1 244 226 0 0 chr1 33704269 33704322 -208960031 - L1 LINE L1 -1361 4785 4733 2037 131 0 0 chr1 33704558 33704849 -208959504 - AluSx SINE Alu -21 291 1 400 318 81 28 chr1 33704876 33705407 -208958946 - L1 LINE L1 -1815 4331 3773 326 235 42 42 chr1 33705434 33705553 -208958800 - L1 LINE L1 -2286 3860 3742 1202 169 127 15 chr1 33705620 33705887 -208958466 - AluJo SINE Alu -14 298 2 204 205 0 0 chr1 33706095 33706134 -208958219 - MIR SINE MIR -112 150 112 1325 213 37 67 chr1 33706205 33706581 -208957772 - MLT1A1 LTR MaLR 0 365 1 2029 124 0 7 chr1 33706601 33706900 -208957453 + AluSx SINE Alu 1 297 -15 253 236 0 0 chr1 33707003 33707058 -208957295 + MIR SINE MIR 202 256 -6 1684 145 7 45 chr1 33707375 33707685 -208956668 - AluJo SINE Alu -12 300 3 2951 159 64 2 chr1 33707735 33708220 -208956133 + MLT2B3 LTR ERVL 1 515 -39 204 185 19 19 chr1 33708220 33708274 -208956079 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 2102 127 0 0 chr1 33708283 33708590 -208955763 - AluSx SINE Alu -2 310 4 606 69 38 38 chr1 33708597 33708756 -208955597 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 240 170 19 38 chr1 33708771 33708786 -208955567 + MLT2B3 LTR ERVL 503 517 -37 243 0 0 0 chr1 33708786 33708813 -208955540 + (TCCA)n Simple_repeat Simple_repeat 2 28 0 240 170 19 38 chr1 33708813 33708850 -208955503 + MLT2B3 LTR ERVL 517 554 0 339 208 0 73 chr1 33709720 33709816 -208954537 - MIR SINE MIR 0 262 174 334 267 10 20 chr1 33709819 33709920 -208954433 + L2 LINE L2 1225 1324 -1990 2816 206 105 125 chr1 33709921 33710604 -208953749 + L2 LINE L2 1575 2270 -1043 883 136 14 0 chr1 33710604 33710775 -208953578 + FRAM SINE Alu 1 172 0 2816 206 105 125 chr1 33710775 33711245 -208953108 + L2 LINE L2 2270 2748 -565 2206 119 0 0 chr1 33711245 33711555 -208952798 - AluSg SINE Alu 0 310 1 2816 206 105 125 chr1 33711555 33712018 -208952335 + L2 LINE L2 2748 3306 -7 325 280 160 0 chr1 33712092 33712192 -208952161 - MIR SINE MIR -135 127 12 255 274 103 68 chr1 33712446 33712563 -208951790 + L2 LINE L2 3193 3313 0 189 286 48 0 chr1 33712787 33712850 -208951503 + MIR SINE MIR 80 145 -117 953 154 7 147 chr1 33713091 33713377 -208950976 - MLT1A1 LTR MaLR 0 365 120 2176 90 18 0 chr1 33713389 33713703 -208950650 - AluSp SINE Alu 0 319 1 1338 151 0 5 chr1 33713705 33713910 -208950443 - AluJb SINE Alu -23 289 86 481 209 18 9 chr1 33713913 33714023 -208950330 - MLT1A1 LTR MaLR -254 111 1 251 272 10 0 chr1 33714069 33714172 -208950181 + GA-rich Low_complexity Low_complexity 1 104 0 481 239 173 35 chr1 33714179 33714435 -208949918 - L1 LINE L1 -2629 3517 3230 1499 201 72 0 chr1 33714435 33714599 -208949754 - AluJb SINE Alu -8 304 110 198 0 0 0 chr1 33714599 33714621 -208949732 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 1499 201 72 0 chr1 33714621 33714735 -208949618 - AluJb SINE Alu -202 110 6 481 239 173 35 chr1 33714735 33714747 -208949606 - L1 LINE L1 -2916 3230 3221 216 86 0 0 chr1 33714752 33714787 -208949566 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2255 92 27 0 chr1 33714793 33715085 -208949268 - AluSx SINE Alu -12 300 1 5235 49 0 2 chr1 33715141 33715769 -208948584 + L1PA5 LINE L1 5522 6148 -6 2851 29 0 0 chr1 33715771 33716080 -208948273 + AluY SINE Alu 1 309 -2 1849 96 96 28 chr1 33716091 33716373 -208947980 + AluY SINE Alu 1 301 -10 633 206 56 19 chr1 33716380 33716540 -208947813 + L1MC5 LINE L1 5596 5761 -2047 1467 153 0 0 chr1 33716546 33716768 -208947585 + AluJb SINE Alu 1 222 -90 1203 219 48 91 chr1 33716857 33717212 -208947141 + L1MC5 LINE L1 6415 6784 -1203 2294 126 0 0 chr1 33717212 33717514 -208946839 + AluSg SINE Alu 1 302 -8 1203 219 48 91 chr1 33717514 33718021 -208946332 + L1MC5 LINE L1 6784 7250 -737 1094 273 27 30 chr1 33718166 33718500 -208945853 - LTR16C LTR ERVL 0 491 159 314 264 75 0 chr1 33718643 33718749 -208945604 + L1MC5 LINE L1 7348 7461 -500 596 276 60 24 chr1 33718750 33719000 -208945353 - LTR16C LTR ERVL -136 355 97 247 301 0 11 chr1 33719645 33719757 -208944596 + CT-rich Low_complexity Low_complexity 1 110 0 2354 99 7 0 chr1 33719873 33720175 -208944178 - AluSx SINE Alu -8 304 1 213 39 0 0 chr1 33720217 33720243 -208944110 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 587 201 48 109 chr1 33720460 33720824 -208943529 + L2 LINE L2 2736 3081 -232 620 257 58 15 chr1 33720946 33721297 -208943056 - L1ME LINE L1 -483 5638 5259 2378 98 141 5 chr1 33721584 33721961 -208942392 + MSTA LTR MaLR 1 428 0 408 278 161 56 chr1 33722719 33722995 -208941358 - L1ME LINE L1 -1098 5048 4802 1151 101 10 30 chr1 33722995 33723193 -208941160 + L1MB3 LINE L1 5987 6180 -3 408 278 161 56 chr1 33723193 33723300 -208941053 - L1ME LINE L1 -1344 4802 4708 1636 157 3 74 chr1 33723300 33723467 -208940886 - AluJo SINE Alu -11 301 167 2439 74 10 19 chr1 33723467 33723777 -208940576 - AluSq SINE Alu -6 307 1 1636 157 3 74 chr1 33723777 33723933 -208940420 - AluJo SINE Alu -145 167 1 408 278 161 56 chr1 33723933 33724156 -208940197 - L1ME LINE L1 -1438 4708 4377 298 339 119 8 chr1 33724511 33724629 -208939724 + MIR SINE MIR 17 147 -61 324 293 37 0 chr1 33724648 33724730 -208939623 + L2 LINE L2 3119 3203 -69 624 250 61 0 chr1 33724731 33724895 -208939458 - MER91A DNA MER1_type 0 196 23 196 283 67 0 chr1 33724904 33724964 -208939389 + L2 LINE L2 3209 3272 0 351 0 0 0 chr1 33724981 33725020 -208939333 + (GA)n Simple_repeat Simple_repeat 1 39 0 213 294 39 49 chr1 33725344 33725446 -208938907 - L2 LINE L2 -339 2974 2874 2527 30 40 0 chr1 33725661 33725958 -208938395 + AluY SINE Alu 1 309 -2 192 343 176 0 chr1 33725958 33726066 -208938287 + MIR SINE MIR 59 185 -77 249 277 27 0 chr1 33726101 33726213 -208938140 + HAL1 LINE L1 2029 2143 -364 289 259 58 29 chr1 33726213 33726352 -208938001 - L1ME LINE L1 -1978 4168 4026 512 89 0 12 chr1 33726501 33726605 -208937748 - L1PA3 LINE L1 0 6168 6066 2095 131 3 13 chr1 33726605 33726903 -208937450 - AluSx SINE Alu -17 295 1 2286 90 6 10 chr1 33727099 33727410 -208936943 - AluSg SINE Alu 0 310 1 1836 159 3 37 chr1 33727583 33727904 -208936449 + AluJb SINE Alu 1 310 -2 770 253 44 24 chr1 33728025 33728274 -208936079 - HAL1b LINE L1 -784 564 311 228 67 0 0 chr1 33728275 33728305 -208936048 + (TG)n Simple_repeat Simple_repeat 1 30 0 2065 129 0 4 chr1 33728305 33728585 -208935768 - AluSx SINE Alu -33 279 1 922 91 0 61 chr1 33728697 33728829 -208935524 - AluSq/x SINE Alu -183 130 7 2309 60 60 0 chr1 33728893 33729174 -208935179 - AluSp SINE Alu -15 298 1 405 236 0 0 chr1 33729318 33729390 -208934963 + FRAM SINE Alu 74 145 -31 313 207 24 12 chr1 33729394 33729476 -208934877 + L2 LINE L2 2977 3059 -213 426 294 43 56 chr1 33730016 33730247 -208934106 + MIR SINE MIR 20 247 -15 249 267 9 52 chr1 33730378 33730494 -208933859 - L1ME LINE L1 -268 5853 5743 850 275 18 9 chr1 33731033 33731262 -208933091 - MIR SINE MIR -29 233 3 253 337 72 36 chr1 33731323 33731489 -208932864 - L2 LINE L2 -219 3053 2882 443 247 0 11 chr1 33731550 33731643 -208932710 - L2 LINE L2 -43 3229 3138 423 0 0 0 chr1 33731875 33731922 -208932431 + (TG)n Simple_repeat Simple_repeat 2 48 0 823 126 118 0 chr1 33731922 33732048 -208932305 - FRAM SINE Alu -147 165 21 395 247 39 77 chr1 33732295 33732477 -208931876 + LTR67 LTR ERVL 120 294 -263 242 311 44 0 chr1 33732537 33732627 -208931726 + LTR67 LTR ERVL 456 549 -8 2581 122 20 54 chr1 33732656 33733100 -208931253 + Tigger2a DNA MER2_type 2 430 -4 192 324 86 9 chr1 33733105 33733210 -208931143 - MIR SINE MIR -131 131 19 1904 114 11 37 chr1 33733470 33733619 -208930734 - AluSx SINE Alu -36 276 136 2167 95 47 3 chr1 33733619 33733915 -208930438 - AluSp SINE Alu -4 309 1 1904 114 11 37 chr1 33733915 33734038 -208930315 - AluSx SINE Alu -176 136 11 246 380 33 20 chr1 33734740 33734890 -208929463 - MIR SINE MIR -35 227 76 411 227 11 29 chr1 33734918 33735048 -208929305 - L1MCa LINE L1 -1339 6983 1995 349 238 19 29 chr1 33734964 33735069 -208929284 + L1MC4 LINE L1 6614 6717 -1325 * 308 239 29 29 chr1 33735080 33735182 -208929171 - MIR SINE MIR -85 123 21 646 306 36 0 chr1 33735448 33735644 -208928709 - MIR SINE MIR -12 250 48 271 216 225 45 chr1 33735994 33736105 -208928248 - MIR SINE MIR -107 155 25 1835 154 17 100 chr1 33736587 33737066 -208927287 + L1MC3 LINE L1 6863 7301 -484 194 234 103 37 chr1 33738312 33738419 -208925934 - L2 LINE L2 -841 2473 2360 269 273 0 15 chr1 33738867 33738933 -208925420 - MIR SINE MIR -178 84 20 2140 103 0 0 chr1 33738990 33739262 -208925091 - AluSg SINE Alu -38 272 1 2124 116 0 58 chr1 33739758 33740085 -208924268 + AluJb SINE Alu 1 308 -4 2335 98 0 7 chr1 33740090 33740397 -208923956 + AluSx SINE Alu 7 311 -1 472 268 21 21 chr1 33740401 33740543 -208923810 + L1ME LINE L1 5476 5617 -547 316 207 30 118 chr1 33740844 33740979 -208923374 + LTR16C LTR ERVL 369 491 0 422 269 122 21 chr1 33740980 33741218 -208923135 + L1ME LINE L1 5614 5882 -284 2319 98 6 25 chr1 33741226 33741542 -208922811 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr1 33741747 33741769 -208922584 + AT_rich Low_complexity Low_complexity 1 22 0 1026 189 11 11 chr1 33741892 33742072 -208922281 + AluJo SINE Alu 120 299 -13 353 224 206 47 chr1 33742074 33742244 -208922109 - L1ME4a LINE L1 -31 6090 5894 252 240 93 39 chr1 33742266 33742308 -208922045 - L1ME4a LINE L1 -18 6103 6065 2547 80 0 3 chr1 33742308 33742620 -208921733 + AluY SINE Alu 1 311 0 252 240 93 39 chr1 33742620 33742706 -208921647 - L1ME4a LINE L1 -56 6065 5968 2380 109 0 0 chr1 33742787 33743091 -208921262 - AluSx SINE Alu -8 304 1 2474 196 53 2 chr1 33743103 33743653 -208920700 + L1MD3 LINE L1 7411 7988 -7 232 300 11 56 chr1 33743769 33743859 -208920494 - L2 LINE L2 -43 3229 3144 882 181 9 86 chr1 33743957 33744167 -208920186 + AluJb SINE Alu 114 307 -5 333 282 39 23 chr1 33744173 33744432 -208919921 + L1M4 LINE L1 2287 2549 -3597 2294 109 0 0 chr1 33744435 33744728 -208919625 - AluSx SINE Alu -19 293 1 23 0 0 0 chr1 33744729 33744752 -208919601 + AT_rich Low_complexity Low_complexity 1 23 0 752 118 0 0 chr1 33744753 33744855 -208919498 - FRAM SINE Alu -21 155 54 2058 136 0 13 chr1 33745228 33745538 -208918815 - AluJb SINE Alu -6 306 1 180 0 0 0 chr1 33745587 33745607 -208918746 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2451 92 3 6 chr1 33745812 33746126 -208918227 - AluSp SINE Alu 0 313 1 445 265 52 88 chr1 33747255 33747504 -208916849 - MIR SINE MIR 0 262 23 2390 50 7 14 chr1 33747707 33748004 -208916349 - AluY SINE Alu -16 295 1 790 162 0 49 chr1 33749421 33749563 -208914790 - AluJo SINE Alu -176 136 2 1624 167 33 7 chr1 33749567 33749905 -208914448 - AluJb SINE Alu 0 345 1 1166 143 4 35 chr1 33749927 33750185 -208914168 + AluJb SINE Alu 1 307 -5 268 289 0 12 chr1 33750417 33750500 -208913853 - L1ME4a LINE L1 -1930 5878 5797 333 340 30 0 chr1 33751018 33751118 -208913235 + L2 LINE L2 3162 3264 -8 2326 120 0 0 chr1 33751444 33751753 -208912600 - AluSq SINE Alu -4 309 1 23 0 0 0 chr1 33751762 33751785 -208912568 + AT_rich Low_complexity Low_complexity 1 23 0 1119 177 0 0 chr1 33751786 33751961 -208912392 - FAM SINE Alu 0 175 1 2012 224 88 53 chr1 33751962 33752626 -208911727 - L1ME3 LINE L1 -62 6100 5406 1972 164 0 0 chr1 33752626 33752919 -208911434 - AluJb SINE Alu -19 293 1 2012 224 88 53 chr1 33752919 33752992 -208911361 - L1ME3 LINE L1 -756 5406 5337 358 323 84 20 chr1 33753018 33753269 -208911084 + L2 LINE L2 2158 2424 -890 2246 104 0 0 chr1 33753352 33753641 -208910712 + AluSx SINE Alu 1 289 -23 282 56 0 0 chr1 33753641 33753677 -208910676 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 187 301 167 38 chr1 33753687 33753873 -208910480 + L2 LINE L2 2937 3146 -126 604 294 99 0 chr1 33753939 33754191 -208910162 + MLT1K LTR MaLR 77 353 -235 2159 109 3 16 chr1 33754397 33754700 -208909653 - AluSx SINE Alu -13 299 1 835 238 32 0 chr1 33754707 33754896 -208909457 + MIR SINE MIR 12 206 -56 2423 105 0 0 chr1 33755408 33755712 -208908641 + AluSx SINE Alu 1 304 -8 373 326 14 14 chr1 33755725 33755866 -208908487 + MIR SINE MIR 21 161 -101 233 310 9 60 chr1 33755922 33756038 -208908315 + MIR SINE MIR 153 262 0 2446 58 0 7 chr1 33756140 33756480 -208907873 - AluY SINE Alu 0 311 1 28 0 0 0 chr1 33756481 33756509 -208907844 + AT_rich Low_complexity Low_complexity 1 28 0 834 142 0 0 chr1 33757071 33757184 -208907169 + FLAM_C SINE Alu 1 113 -30 1416 150 105 45 chr1 33757192 33757485 -208906868 - AluSx SINE Alu 0 309 1 2393 100 0 0 chr1 33757515 33757824 -208906529 + AluSc SINE Alu 1 309 0 657 206 89 17 chr1 33758187 33758367 -208905986 + LTR33 LTR ERVL 329 521 0 309 226 129 16 chr1 33758514 33758638 -208905715 - MLT1K LTR MaLR -158 430 293 1974 167 0 0 chr1 33758650 33758944 -208905409 + AluJb SINE Alu 3 296 -16 2181 116 20 0 chr1 33758947 33759249 -208905104 + AluSx SINE Alu 1 308 -4 670 292 50 39 chr1 33759288 33759569 -208904784 - MLT1K LTR MaLR -290 298 15 2221 132 3 0 chr1 33759579 33759883 -208904470 - AluSx SINE Alu -7 305 1 184 321 18 0 chr1 33759897 33759953 -208904400 + MIR SINE MIR 74 130 -78 417 287 149 46 chr1 33759969 33760103 -208904250 - MIR SINE MIR 0 262 143 2426 99 0 0 chr1 33760103 33760405 -208903948 + AluSq SINE Alu 1 302 -11 2258 102 10 0 chr1 33760406 33760700 -208903653 + AluSc SINE Alu 1 297 -12 198 0 0 0 chr1 33760700 33760722 -208903631 + (CAAGA)n Simple_repeat Simple_repeat 2 23 0 417 287 149 46 chr1 33760722 33760779 -208903574 - MIR SINE MIR -118 144 48 186 319 58 0 chr1 33760906 33760975 -208903378 - MIR SINE MIR -18 244 172 2327 94 0 10 chr1 33761321 33761629 -208902724 + AluSc SINE Alu 1 305 -4 1732 167 13 42 chr1 33761949 33762114 -208902239 - AluJo SINE Alu -15 297 144 2363 96 0 0 chr1 33762114 33762405 -208901948 - AluSg SINE Alu -17 293 3 1732 167 13 42 chr1 33762405 33762424 -208901929 - AluJo SINE Alu -168 144 1 810 141 0 25 chr1 33762424 33762545 -208901808 - FLAM_C SINE Alu -15 118 1 2108 143 0 9 chr1 33762553 33762868 -208901485 - AluSx SINE Alu 0 312 1 310 328 185 0 chr1 33762887 33763076 -208901277 - MIR SINE MIR 0 262 39 * 1500 276 143 23 chr1 33763068 33763553 -208900800 + L2 LINE L2 2249 2675 -638 1522 176 58 18 chr1 33763553 33763831 -208900522 - AluJb SINE Alu -23 289 1 2319 113 0 0 chr1 33763837 33764139 -208900214 - AluSx SINE Alu -10 302 1 1500 276 143 23 chr1 33764139 33764606 -208899747 + L2 LINE L2 2679 3313 0 210 91 0 0 chr1 33765191 33765224 -208899129 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2024 156 10 0 chr1 33765235 33765542 -208898811 + AluJb SINE Alu 1 310 -2 374 101 29 29 chr1 33765543 33765612 -208898741 - L1MB7 LINE L1 -13 6171 6103 3414 173 70 104 chr1 33765617 33765720 -208898633 - L1M4 LINE L1 -868 5278 5173 1444 107 0 0 chr1 33765720 33765925 -208898428 + L1PA13 LINE L1 5958 6162 -1 2336 118 0 0 chr1 33765929 33766235 -208898118 + AluSx SINE Alu 1 306 -6 3414 173 70 104 chr1 33766235 33766593 -208897760 - L1M4 LINE L1 -976 5170 4801 2290 116 0 7 chr1 33766593 33766903 -208897450 - AluSx SINE Alu -4 308 1 3414 173 70 104 chr1 33766903 33767259 -208897094 - L1M4 LINE L1 -1345 4801 4434 1865 179 0 3 chr1 33767259 33767545 -208896808 + AluJo SINE Alu 1 287 -25 306 0 0 0 chr1 33767545 33767579 -208896774 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1865 179 0 3 chr1 33767579 33767605 -208896748 + AluJo SINE Alu 287 312 0 3414 173 70 104 chr1 33767605 33767652 -208896701 - L1M4 LINE L1 -1712 4434 4387 1600 184 3 32 chr1 33767652 33767817 -208896536 - AluJb SINE Alu -7 305 152 2289 97 14 0 chr1 33767817 33768107 -208896246 - AluY SINE Alu -17 294 1 1600 184 3 32 chr1 33768107 33768250 -208896103 - AluJb SINE Alu -160 152 6 3414 173 70 104 chr1 33768250 33768527 -208895826 - L1M4 LINE L1 -1759 4387 4169 1790 106 0 0 chr1 33768527 33768754 -208895599 - AluSq SINE Alu -86 227 1 526 293 18 54 chr1 33768760 33768808 -208895545 - MIR SINE MIR -68 194 146 2351 108 0 0 chr1 33768808 33769103 -208895250 - AluSg SINE Alu -15 295 1 526 293 18 54 chr1 33769103 33769221 -208895132 - MIR SINE MIR -116 146 34 24 0 0 0 chr1 33769247 33769271 -208895082 + AT_rich Low_complexity Low_complexity 1 24 0 2525 74 0 3 chr1 33769316 33769626 -208894727 + AluY SINE Alu 1 309 -2 2285 112 0 0 chr1 33769889 33770185 -208894168 - AluSq SINE Alu -17 296 1 1631 184 17 10 chr1 33770188 33770482 -208893871 - AluJo SINE Alu -16 296 1 256 73 0 0 chr1 33770510 33770551 -208893802 - HY3 scRNA scRNA -7 94 54 1979 119 18 14 chr1 33770625 33770784 -208893569 - AluSq SINE Alu -16 297 135 2350 93 0 31 chr1 33770784 33771106 -208893247 - AluSx SINE Alu 0 312 1 1979 119 18 14 chr1 33771106 33771223 -208893130 - AluSq SINE Alu -178 135 20 2232 99 26 3 chr1 33771867 33772170 -208892183 + AluSp SINE Alu 2 311 -2 247 263 22 66 chr1 33772270 33772342 -208892011 - L1ME4a LINE L1 0 6121 6056 2206 101 7 3 chr1 33772342 33772638 -208891715 + AluSc SINE Alu 1 297 -12 247 263 22 66 chr1 33772638 33772702 -208891651 - L1ME4a LINE L1 -65 6056 5991 361 174 0 0 chr1 33772756 33772825 -208891528 - LTR30 LTR ERV1 -102 620 552 432 289 75 11 chr1 33773163 33773350 -208891003 - L1MC4a LINE L1 -312 5809 5628 2126 128 7 0 chr1 33773408 33773698 -208890655 + AluSx SINE Alu 1 292 -20 307 294 113 57 chr1 33773850 33774027 -208890326 - MIR SINE MIR -29 233 47 1345 106 0 11 chr1 33774345 33774558 -208889795 + AluSg/x SINE Alu 107 317 0 818 268 96 30 chr1 33774560 33774862 -208889491 - MLT1K LTR MaLR -150 438 117 365 264 35 49 chr1 33775007 33775151 -208889202 - L2 LINE L2 -1 3312 3171 1723 150 8 4 chr1 33775298 33775552 -208888801 + AluJo SINE Alu 37 291 -21 859 245 43 51 chr1 33775639 33775892 -208888461 - MIR SINE MIR 0 262 12 709 232 87 93 chr1 33776100 33776410 -208887943 + MER102a DNA MER1_type 9 316 -14 1779 150 0 70 chr1 33776689 33777002 -208887351 + AluJb SINE Alu 7 297 -15 2223 136 0 0 chr1 33777004 33777314 -208887039 + AluSx SINE Alu 1 310 -2 1996 139 0 0 chr1 33777393 33777667 -208886686 + AluJb SINE Alu 1 274 -38 604 104 8 52 chr1 33777667 33777801 -208886552 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 538 323 134 11 chr1 33777877 33778317 -208886036 - L2 LINE L2 -842 2472 1979 835 107 8 25 chr1 33778323 33778445 -208885908 + FLAM_C SINE Alu 6 125 -18 2395 92 3 0 chr1 33778457 33778761 -208885592 + AluSp SINE Alu 3 307 -6 2216 113 3 0 chr1 33778776 33779069 -208885284 + AluSx SINE Alu 1 294 -18 2529 80 0 6 chr1 33779071 33779383 -208884970 + AluSq SINE Alu 1 310 -3 2294 92 3 0 chr1 33780036 33780351 -208884002 - AluSp SINE Alu 0 316 1 479 260 215 23 chr1 33780371 33780590 -208883763 - MIR SINE MIR 0 262 2 575 163 0 0 chr1 33781477 33781569 -208882784 + AluJ/FLAM SINE Alu 2 93 -219 180 77 0 0 chr1 33781592 33781618 -208882735 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1794 98 0 4 chr1 33781679 33781904 -208882449 + AluSx SINE Alu 1 224 -88 2118 114 0 38 chr1 33781907 33782222 -208882131 + AluSq SINE Alu 1 303 -10 2157 111 0 0 chr1 33782231 33782510 -208881843 + AluSx SINE Alu 1 279 -33 252 0 0 0 chr1 33782510 33782538 -208881815 + (CA)n Simple_repeat Simple_repeat 1 28 0 422 241 132 61 chr1 33782553 33782765 -208881588 - MIR SINE MIR -26 236 10 225 318 64 9 chr1 33782762 33782872 -208881481 - MIR SINE MIR -61 201 86 * 1813 112 0 35 chr1 33783346 33783605 -208880748 - AluSx SINE Alu -53 259 10 207 288 0 17 chr1 33784549 33784608 -208879745 - L3 LINE CR1 -3 1574 1517 2531 50 0 3 chr1 33784835 33785133 -208879220 + AluY SINE Alu 1 297 -14 239 275 38 25 chr1 33785242 33785322 -208879031 - L3 LINE CR1 -74 1503 1423 2347 88 3 38 chr1 33785359 33785679 -208878674 - AluSc SINE Alu 0 309 1 311 0 0 25 chr1 33785785 33785825 -208878528 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 772 234 7 0 chr1 33785827 33785972 -208878381 - FRAM SINE Alu -30 146 1 331 214 194 0 chr1 33786038 33786141 -208878212 + L2 LINE L2 3191 3313 0 533 232 98 68 chr1 33786334 33786497 -208877856 + L1ME4a LINE L1 5634 5791 -330 2296 96 0 10 chr1 33786497 33786799 -208877554 + AluSg SINE Alu 1 299 -11 533 232 98 68 chr1 33786799 33787003 -208877350 + L1ME4a LINE L1 5791 6008 -113 2169 89 11 7 chr1 33787007 33787313 -208877040 + AluSp SINE Alu 1 307 0 237 169 0 0 chr1 33787407 33787454 -208876899 - L1MB7 LINE L1 0 6178 6132 1985 131 28 3 chr1 33787487 33787777 -208876576 - AluSx SINE Alu -15 297 1 2325 110 3 0 chr1 33787819 33788127 -208876226 - AluSg1 SINE Alu 0 309 1 617 136 0 0 chr1 33788146 33788227 -208876126 + AluJ/FLAM SINE Alu 4 84 -228 2092 125 0 7 chr1 33788366 33788663 -208875690 + AluSq SINE Alu 1 295 -18 243 182 23 0 chr1 33788694 33788738 -208875615 + MIR3 SINE MIR 134 178 -30 1043 105 0 0 chr1 33788816 33788949 -208875404 - AluSq/x SINE Alu -179 133 1 646 206 16 167 chr1 33789549 33789806 -208874547 + MIR SINE MIR 10 227 -35 2339 88 3 7 chr1 33789808 33790116 -208874237 + AluSp SINE Alu 1 307 -6 2295 62 3 42 chr1 33790218 33790524 -208873829 + AluY SINE Alu 1 294 -17 2268 81 7 10 chr1 33790702 33791000 -208873353 + AluSx SINE Alu 1 297 -15 715 241 85 30 chr1 33791009 33791208 -208873145 + MIR SINE MIR 40 249 -13 268 289 0 12 chr1 33792226 33792309 -208872044 + L1MC/D LINE L1 5797 5878 -1930 1166 143 4 35 chr1 33792541 33792799 -208871554 - AluJb SINE Alu -5 307 1 1625 167 33 7 chr1 33792821 33793154 -208871199 + AluJb SINE Alu 1 340 0 790 162 0 49 chr1 33793158 33793300 -208871053 + AluJo SINE Alu 2 136 -176 2530 44 0 7 chr1 33794717 33795012 -208869341 + AluY SINE Alu 1 293 -18 2287 88 7 3 chr1 33795036 33795331 -208869022 + AluSq SINE Alu 1 296 -17 1371 165 0 48 chr1 33795352 33795601 -208868752 - AluJo SINE Alu -75 237 1 1006 174 12 0 chr1 33795856 33796017 -208868336 + AluSg/x SINE Alu 135 297 -15 2254 120 0 22 chr1 33796074 33796391 -208867962 + AluSx SINE Alu 2 311 -1 1360 206 91 0 chr1 33796486 33796772 -208867581 + AluJo SINE Alu 1 312 0 190 318 121 15 chr1 33797926 33798058 -208866295 + L2 LINE L2 3168 3313 0 458 254 36 9 chr1 33798734 33798844 -208865509 + MER81 DNA DNA 1 113 -1 181 267 22 22 chr1 33799061 33799106 -208865247 + MIR SINE MIR 33 77 -185 270 0 0 0 chr1 33799128 33799158 -208865195 + (T)n Simple_repeat Simple_repeat 1 30 0 2457 77 0 0 chr1 33799221 33799519 -208864834 + AluY SINE Alu 1 298 -13 2422 77 3 0 chr1 33801540 33801838 -208862515 - AluSp SINE Alu -14 299 1 2156 135 0 0 chr1 33801838 33802133 -208862220 - AluSx SINE Alu -16 296 1 532 221 326 11 chr1 33802177 33802367 -208861986 - MIR SINE MIR 0 262 13 2372 68 0 19 chr1 33802397 33802708 -208861645 + AluY SINE Alu 1 305 -6 2034 91 42 3 chr1 33802837 33803124 -208861229 + AluSq SINE Alu 1 298 -15 360 167 72 1 chr1 33803328 33803403 -208860950 + AluJ/FRAM SINE Alu 224 295 -7 201 229 300 0 chr1 33803485 33803555 -208860798 - L2 LINE L2 -12 3301 3211 2125 113 20 3 chr1 33803815 33804108 -208860245 - AluSg SINE Alu -12 298 1 629 143 0 0 chr1 33804123 33804214 -208860139 + AluSg/x SINE Alu 205 295 -15 301 272 0 25 chr1 33804251 33804332 -208860021 + MIR SINE MIR 78 156 -106 542 184 0 110 chr1 33804376 33804434 -208859919 + MIR SINE MIR 14 50 -212 1671 187 27 10 chr1 33804434 33804734 -208859619 + AluJo SINE Alu 1 305 -7 542 184 0 110 chr1 33804734 33804811 -208859542 + MIR SINE MIR 50 134 -128 187 292 21 0 chr1 33804899 33804947 -208859406 + L2 LINE L2 3250 3298 -15 2344 90 3 3 chr1 33805428 33805729 -208858624 - AluY SINE Alu -10 301 1 1086 92 7 0 chr1 33805729 33805871 -208858482 - AluY SINE Alu -20 291 149 2327 94 10 0 chr1 33806068 33806367 -208857986 - AluSp SINE Alu -11 302 1 950 105 0 0 chr1 33806367 33806500 -208857853 - AluSg/x SINE Alu -6 306 174 844 179 61 30 chr1 33806500 33806581 -208857772 - MER33 DNA MER1_type -88 74 1 1533 143 12 104 chr1 33806581 33806916 -208857437 - AluJb SINE Alu -8 304 1 2003 167 0 0 chr1 33806920 33807225 -208857128 - AluJb SINE Alu -7 305 1 844 179 61 30 chr1 33807225 33807374 -208856979 - MER33 DNA MER1_type -167 4294967291 1 2451 236 80 50 chr1 33807704 33807943 -208856410 + HAL1 LINE L1 744 974 -1533 2518 78 0 0 chr1 33807943 33808239 -208856114 - AluSg SINE Alu -14 296 1 2451 236 80 50 chr1 33808239 33808844 -208855509 + HAL1 LINE L1 974 1633 -874 2500 85 7 0 chr1 33808844 33809149 -208855204 + AluSg SINE Alu 1 307 -3 2451 236 80 50 chr1 33809149 33809434 -208854919 + HAL1 LINE L1 1633 1908 -599 210 37 0 0 chr1 33809696 33809723 -208854630 + (TG)n Simple_repeat Simple_repeat 2 28 0 464 186 0 0 chr1 33809724 33809794 -208854559 - AluSg/x SINE Alu -29 280 211 721 193 8 0 chr1 33809796 33809915 -208854438 + AluSc SINE Alu 131 250 -59 355 118 0 0 chr1 33809916 33809967 -208854386 - AluSp/q SINE Alu -96 207 157 2391 103 0 3 chr1 33809988 33810300 -208854053 + AluY SINE Alu 1 311 0 2002 105 6 32 chr1 33810328 33810643 -208853710 + AluSp SINE Alu 1 307 -6 1667 94 7 51 chr1 33810665 33810941 -208853412 + AluY SINE Alu 18 281 -30 2336 116 0 3 chr1 33810979 33811290 -208853063 + AluSx SINE Alu 1 310 -2 280 264 52 45 chr1 33811454 33811609 -208852744 + HAL1b LINE L1 746 901 -447 2382 72 0 33 chr1 33811946 33812252 -208852101 - AluY SINE Alu -14 297 2 230 258 90 22 chr1 33812275 33812364 -208851989 + L1ME4a LINE L1 5554 5648 -473 1169 60 0 0 chr1 33812448 33812582 -208851771 + AluY SINE Alu 1 134 -177 2060 110 53 0 chr1 33812582 33812863 -208851490 + AluSx SINE Alu 2 297 -15 499 323 71 46 chr1 33812867 33812938 -208851415 + L1ME4a LINE L1 5751 5819 -302 1830 175 0 31 chr1 33812938 33813152 -208851201 + 7SLRNA srpRNA srpRNA 1 203 -117 2662 68 0 0 chr1 33813152 33813462 -208850891 + AluY SINE Alu 1 310 -1 1830 175 0 31 chr1 33813462 33813573 -208850780 + 7SLRNA srpRNA srpRNA 203 316 -4 499 323 71 46 chr1 33813573 33813694 -208850659 + L1ME4a LINE L1 5819 5935 -186 2167 117 17 0 chr1 33813694 33813992 -208850361 + AluSx SINE Alu 1 303 -9 499 323 71 46 chr1 33813992 33814138 -208850215 + L1ME4a LINE L1 5935 6094 -27 1609 184 10 7 chr1 33814138 33814432 -208849921 - AluJb SINE Alu -17 295 1 499 323 71 46 chr1 33814432 33814456 -208849897 + L1ME4a LINE L1 6094 6116 -5 239 311 0 19 chr1 33814789 33814892 -208849461 + (CA)n Simple_repeat Simple_repeat 2 102 0 228 284 14 0 chr1 33814953 33815027 -208849326 + GA-rich Low_complexity Low_complexity 1 75 0 2365 90 3 0 chr1 33816225 33816537 -208847816 + AluSq SINE Alu 1 313 0 408 40 0 0 chr1 33816747 33816797 -208847556 + (CA)n Simple_repeat Simple_repeat 2 51 0 459 297 24 12 chr1 33817188 33817353 -208847000 - MIR SINE MIR -50 212 46 376 299 107 44 chr1 33817807 33818209 -208846144 + L2 LINE L2 2808 3312 -1 862 115 0 8 chr1 33818588 33818718 -208845635 + FLAM_C SINE Alu 1 129 -14 237 354 57 25 chr1 33820080 33820238 -208844115 + L2 LINE L2 2446 2608 -706 253 235 86 25 chr1 33820433 33820514 -208843839 + L2 LINE L2 3228 3313 0 1298 76 333 168 chr1 33820531 33820798 -208843555 - L2 LINE L2 -103 3210 2988 1924 108 13 44 chr1 33820798 33820969 -208843384 - AluSx SINE Alu -7 305 130 2207 105 0 6 chr1 33820969 33821283 -208843070 - AluSq SINE Alu -1 312 1 1978 111 0 4 chr1 33821288 33821595 -208842758 - AluSc SINE Alu 0 306 1 1924 108 13 44 chr1 33821595 33821731 -208842622 - AluSx SINE Alu -186 126 1 1298 76 333 168 chr1 33821731 33822074 -208842279 - L2 LINE L2 -325 2988 2703 1518 160 6 42 chr1 33822074 33822387 -208841966 + AluJb SINE Alu 11 312 0 1298 76 333 168 chr1 33822387 33822498 -208841855 - L2 LINE L2 -610 2703 2402 858 80 7 29 chr1 33822519 33822657 -208841696 - AluY SINE Alu -13 298 164 220 268 49 0 chr1 33875456 33875538 -208788815 + MIR3 SINE MIR 94 179 -29 2165 114 0 17 chr1 33876991 33877288 -208787065 + AluSx SINE Alu 1 292 -20 2394 98 0 9 chr1 33878586 33878721 -208785632 + AluSx SINE Alu 1 136 -176 2306 102 7 0 chr1 33878721 33879024 -208785329 + AluSp SINE Alu 1 305 -8 2394 98 0 9 chr1 33879024 33879203 -208785150 + AluSx SINE Alu 136 312 0 266 229 181 4 chr1 33879218 33879327 -208785026 + MIR SINE MIR 35 167 -85 2028 107 34 21 chr1 33879390 33879681 -208784672 - AluJo SINE Alu -17 295 1 578 85 0 0 chr1 33880288 33880370 -208783983 - L1P LINE L1 -1022 5124 5043 26523 134 10 62 chr1 33880380 33885325 -208779028 + L1P LINE L1 377 5065 -1081 767 243 110 0 chr1 33885322 33885614 -208778739 - L1M4 LINE L1 -1088 5058 4735 * 330 216 23 0 chr1 33885749 33885837 -208778516 - L1M4 LINE L1 -1640 4506 4417 787 248 124 0 chr1 33885937 33886179 -208778174 - Charlie2b DNA MER1_type -1630 1152 881 645 287 55 38 chr1 33886210 33886447 -208777906 - MIR SINE MIR -2 260 20 1620 177 47 44 chr1 33886455 33886862 -208777491 - L1MA9 LINE L1 -34 6278 5871 543 210 37 2 chr1 33886857 33886992 -208777361 + L1MA9 LINE L1 5736 5875 -281 * 651 289 36 0 chr1 33887097 33887322 -208777031 - MIR SINE MIR -26 236 4 1939 250 65 32 chr1 33887430 33888087 -208776266 - L1ME1 LINE L1 0 6166 5488 1150 200 8 47 chr1 33888200 33888435 -208775918 + MSTD LTR MaLR 171 396 0 1034 222 59 5 chr1 33888435 33888655 -208775698 + MLT1A1 LTR MaLR 134 365 0 2199 256 99 55 chr1 33888684 33890384 -208773969 + L1M4 LINE L1 3671 5473 -701 1136 214 46 41 chr1 33890561 33890930 -208773423 + L1MA7 LINE L1 5921 6291 0 24 0 0 0 chr1 33890930 33890954 -208773399 + AT_rich Low_complexity Low_complexity 1 24 0 16048 143 27 68 chr1 33891672 33895037 -208769316 - L1P LINE L1 -2330 3816 591 1829 217 6 6 chr1 33895045 33895404 -208768949 - MLT2D LTR ERVL -55 359 1 2456 87 0 0 chr1 33895654 33895953 -208768400 - AluSg SINE Alu -11 299 1 295 238 89 10 chr1 33896140 33896241 -208768112 - MIR SINE MIR -62 146 38 1298 151 86 62 chr1 33896334 33896625 -208767728 - AluSx SINE Alu -14 298 1 2514 49 3 0 chr1 33896630 33896915 -208767438 - AluSx SINE Alu -26 286 1 431 297 66 19 chr1 33897152 33897364 -208766989 - HAL1b LINE L1 -561 787 566 226 302 81 0 chr1 33897585 33897671 -208766682 + MLT1I LTR MaLR 42 134 -275 283 143 0 86 chr1 33898139 33898183 -208766170 - MLT2C2 LTR ERVL 0 464 427 336 24 0 0 chr1 33898183 33898224 -208766129 + (TG)n Simple_repeat Simple_repeat 1 41 0 283 143 0 86 chr1 33898224 33898249 -208766104 - MLT2C2 LTR ERVL -37 427 401 6896 65 5 2 chr1 33898258 33899636 -208764717 - L1PA7 LINE L1 -4 6150 4773 616 214 36 91 chr1 33899639 33899970 -208764383 + L1ME LINE L1 4140 4452 -1694 2336 144 65 5 chr1 33900314 33900716 -208763637 + MSTA LTR MaLR 1 426 -2 9536 173 19 5 chr1 33900718 33902341 -208762012 + MSTA-int LTR MaLR 1 1645 -6 682 110 31 1 chr1 33902347 33902457 -208761896 + MSTA LTR MaLR 1 113 -313 250 214 0 0 chr1 33902467 33902523 -208761830 + L1ME LINE L1 5382 5437 -684 407 106 234 0 chr1 33902569 33902663 -208761690 + MSTA LTR MaLR 114 229 -199 265 298 106 0 chr1 33903046 33903197 -208761156 + MIR3 SINE MIR 22 188 -20 2601 174 43 6 chr1 33904407 33904873 -208759480 - MER52A LTR ERV1 0 1755 1273 361 221 183 10 chr1 33904982 33905086 -208759267 - MSTA LTR MaLR -306 122 1 10169 43 1 1 chr1 33905125 33907129 -208757224 - L1PA4 LINE L1 -1 6154 4149 723 143 18 0 chr1 33907432 33907544 -208756809 + FLAM_A SINE Alu 13 126 -16 186 281 98 0 chr1 33907574 33907656 -208756697 + MIR3 SINE MIR 67 156 -52 753 128 0 0 chr1 33907876 33907985 -208756368 - FLAM_C SINE Alu -33 110 2 2033 99 88 0 chr1 33908013 33908286 -208756067 + AluSx SINE Alu 1 297 -15 222 118 0 0 chr1 33908896 33908930 -208755423 + (TTCTCC)n Simple_repeat Simple_repeat 4 37 0 639 182 99 0 chr1 33908930 33909051 -208755302 - FLAM_C SINE Alu 0 133 1 1472 134 0 49 chr1 33909054 33909300 -208755053 - AluJb SINE Alu -26 286 53 2294 78 0 32 chr1 33909300 33909608 -208754745 + AluY SINE Alu 1 299 -12 373 180 0 0 chr1 33909609 33909670 -208754683 - AluJb SINE Alu -237 65 5 1603 116 46 0 chr1 33909774 33910015 -208754338 + AluSx SINE Alu 59 310 -2 205 224 102 31 chr1 33910636 33910734 -208753619 - MIR SINE MIR -69 193 89 662 254 37 26 chr1 33911069 33911258 -208753095 + MLT1L LTR MaLR 103 293 -322 253 208 0 0 chr1 33911362 33911415 -208752938 - MIR SINE MIR 0 262 210 4061 128 68 78 chr1 33911418 33911587 -208752766 - Tigger1 DNA MER2_type -1 2417 2248 207 0 0 0 chr1 33911587 33911610 -208752743 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4061 128 68 78 chr1 33911610 33911627 -208752726 - Tigger1 DNA MER2_type -170 2248 2232 2094 97 0 15 chr1 33911627 33911896 -208752457 - AluSg SINE Alu -45 265 1 4061 128 68 78 chr1 33911896 33912211 -208752142 - Tigger1 DNA MER2_type -186 2232 1916 1835 156 10 10 chr1 33912211 33912499 -208751854 + AluJo SINE Alu 2 289 -23 4061 128 68 78 chr1 33912499 33912525 -208751828 - Tigger1 DNA MER2_type -502 1916 1891 246 62 0 0 chr1 33912525 33912557 -208751796 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1762 148 53 7 chr1 33912557 33912840 -208751513 - AluJb SINE Alu -16 296 1 4061 128 68 78 chr1 33912840 33913158 -208751195 - Tigger1 DNA MER2_type -525 1893 1576 406 107 0 204 chr1 33913157 33913260 -208751093 - Tigger1 DNA MER2_type -959 1459 1378 * 2165 113 3 3 chr1 33913260 33913553 -208750800 + AluSq SINE Alu 1 293 -20 198 0 0 0 chr1 33913553 33913575 -208750778 + (TA)n Simple_repeat Simple_repeat 2 23 0 2793 98 29 21 chr1 33913575 33913954 -208750399 - Tigger1 DNA MER2_type -1161 1257 882 2035 132 3 0 chr1 33913954 33914241 -208750112 - AluSx SINE Alu -24 288 1 2359 69 0 14 chr1 33914245 33914536 -208749817 - AluY SINE Alu -20 291 5 1424 209 21 3 chr1 33914539 33914826 -208749527 - AluJo SINE Alu -20 292 1 2793 98 29 21 chr1 33914826 33914855 -208749498 - Tigger1 DNA MER2_type -1539 879 837 2196 111 7 0 chr1 33914856 33915145 -208749208 - AluSx SINE Alu -21 291 1 732 123 0 0 chr1 33915169 33915275 -208749078 - Tigger1 DNA MER2_type -1662 756 651 862 71 143 0 chr1 33915275 33915401 -208748952 - AluY SINE Alu 0 311 168 3491 129 51 18 chr1 33915409 33915478 -208748875 - Tigger1 DNA MER2_type -1762 656 591 2058 119 42 0 chr1 33915478 33915764 -208748589 + AluSp SINE Alu 1 298 -15 3491 129 51 18 chr1 33915764 33916266 -208748087 - Tigger1 DNA MER2_type -1827 591 66 2444 81 0 3 chr1 33916266 33916573 -208747780 - AluSg SINE Alu -4 306 1 21 0 0 0 chr1 33916580 33916601 -208747752 + AT_rich Low_complexity Low_complexity 1 21 0 770 178 0 0 chr1 33916609 33916738 -208747615 + FLAM_C SINE Alu 1 129 -4 245 282 24 12 chr1 33916823 33916908 -208747445 - MIR SINE MIR -115 147 62 2327 91 3 10 chr1 33917018 33917325 -208747028 - AluSp SINE Alu -8 305 1 325 185 0 0 chr1 33917439 33917504 -208746849 - Alu SINE Alu -1 300 236 511 234 105 12 chr1 33917548 33917614 -208746739 + MIR SINE MIR 74 132 -130 1739 181 13 10 chr1 33917614 33917918 -208746435 + AluJo SINE Alu 1 305 -7 511 234 105 12 chr1 33917918 33918022 -208746331 + MIR SINE MIR 132 260 -2 234 87 0 0 chr1 33918087 33918133 -208746220 + LTR66 LTR ERVL 394 439 -171 2316 97 3 0 chr1 33918134 33918432 -208745921 - AluSx SINE Alu -13 299 1 496 216 8 64 chr1 33918553 33918678 -208745675 - L2 LINE L2 -9 3304 3187 462 239 124 104 chr1 33918686 33918845 -208745508 - Charlie8 DNA MER1_type -53 288 121 2254 99 24 0 chr1 33918845 33919137 -208745216 - AluSg SINE Alu -11 299 1 462 239 124 104 chr1 33919137 33919236 -208745117 - Charlie8 DNA MER1_type -220 121 25 36 44 0 15 chr1 33919312 33919349 -208745004 + AT_rich Low_complexity Low_complexity 1 38 -29 2179 113 0 10 chr1 33919349 33919649 -208744704 - AluSx SINE Alu -15 297 1 36 44 0 15 chr1 33919649 33919679 -208744674 + AT_rich Low_complexity Low_complexity 38 67 0 1992 93 0 15 chr1 33919679 33919948 -208744405 - AluSx SINE Alu -23 289 25 1984 129 23 26 chr1 33919970 33920273 -208744080 - AluSx SINE Alu -10 302 1 361 297 116 51 chr1 33920481 33920792 -208743561 - L2 LINE L2 -954 2360 2071 2220 110 0 0 chr1 33920792 33921084 -208743269 + AluSx SINE Alu 1 292 -20 2385 92 0 13 chr1 33921093 33921409 -208742944 + AluSq SINE Alu 1 312 -1 361 297 116 51 chr1 33921409 33921604 -208742749 - L2 LINE L2 -1250 2064 1803 732 159 0 38 chr1 33921604 33921736 -208742617 + FLAM_C SINE Alu 1 127 -6 361 297 116 51 chr1 33921736 33921770 -208742583 - L2 LINE L2 -1511 1803 1773 2349 102 0 3 chr1 33921775 33922078 -208742275 + AluSp SINE Alu 1 302 -11 401 310 8 70 chr1 33922082 33922324 -208742029 - L2 LINE L2 -662 2652 2426 756 183 86 20 chr1 33922362 33922559 -208741794 - MER106B DNA MER1_type -2 1057 848 2003 157 3 0 chr1 33922560 33922860 -208741493 + AluJb SINE Alu 1 301 -11 2411 82 0 0 chr1 33922866 33923157 -208741196 + AluSc SINE Alu 12 302 -7 1522 174 19 0 chr1 33923228 33923487 -208740866 + AluJb SINE Alu 33 296 -16 855 123 0 0 chr1 33923495 33923609 -208740744 + AluJo/FLAM SINE Alu 1 114 -198 2051 127 3 3 chr1 33923609 33923908 -208740445 - AluSx SINE Alu -13 299 1 2071 127 3 3 chr1 33923947 33924246 -208740107 - AluSx SINE Alu -13 299 1 826 125 153 23 chr1 33924248 33924464 -208739889 - MER106B DNA MER1_type -262 797 554 1699 172 150 14 chr1 33924469 33924823 -208739530 - MER106B DNA MER1_type -657 402 1 897 191 39 121 chr1 33924823 33925127 -208739226 - MER46C DNA MER2_type -13 325 52 793 169 0 22 chr1 33925127 33925287 -208739066 - FLAM_C SINE Alu 0 133 1 897 191 39 121 chr1 33925287 33925334 -208739019 - MER46C DNA MER2_type -286 52 3 2242 107 3 3 chr1 33925485 33925783 -208738570 - AluSq SINE Alu -12 301 4 216 322 161 8 chr1 33926242 33926360 -208737993 - MIR SINE MIR -57 151 16 186 43 0 0 chr1 33927070 33927093 -208737260 + (CA)n Simple_repeat Simple_repeat 2 24 0 511 130 20 0 chr1 33927458 33927558 -208736795 + (TA)n Simple_repeat Simple_repeat 2 103 0 251 125 42 0 chr1 33928210 33928258 -208736095 + CT-rich Low_complexity Low_complexity 3 52 0 1447 139 24 32 chr1 33928258 33928509 -208735844 - AluJb SINE Alu -5 307 59 1412 127 0 42 chr1 33928642 33928878 -208735475 - AluJo SINE Alu 0 312 87 213 179 239 0 chr1 33929085 33929152 -208735201 + MIR SINE MIR 65 147 -115 216 0 0 0 chr1 33929324 33929348 -208735005 + (T)n Simple_repeat Simple_repeat 1 24 0 1898 128 84 0 chr1 33929605 33929879 -208734474 + AluSx SINE Alu 1 297 -15 789 191 11 49 chr1 33929964 33930113 -208734240 + L1M4 LINE L1 4907 5046 -1100 2255 102 3 0 chr1 33930113 33930407 -208733946 + AluSq SINE Alu 1 295 -18 789 191 11 49 chr1 33930407 33930468 -208733885 + L1M4 LINE L1 5046 5108 -1038 929 118 0 0 chr1 33930468 33930587 -208733766 + FLAM_C SINE Alu 1 119 -24 27 49 0 0 chr1 33930587 33930628 -208733725 + AT_rich Low_complexity Low_complexity 1 41 0 371 217 9 0 chr1 33930652 33930758 -208733595 + (TA)n Simple_repeat Simple_repeat 2 108 0 195 129 0 0 chr1 33930786 33930817 -208733536 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 414 234 0 3 chr1 33930818 33930907 -208733446 + AluJ/FLAM SINE Alu 1 68 -234 332 179 119 0 chr1 33930941 33931008 -208733345 - tRNA-Asp-GAC tRNA tRNA 0 75 1 2178 117 0 0 chr1 33931035 33931372 -208732981 - AluSx SINE Alu 0 337 1 1623 154 46 0 chr1 33931398 33931678 -208732675 - AluJb SINE Alu 0 302 11 2501 52 0 0 chr1 33931723 33932014 -208732339 + AluY SINE Alu 1 291 -20 680 170 0 0 chr1 33932023 33932135 -208732218 - FLAM_C SINE Alu -30 113 2 2110 143 0 0 chr1 33932163 33932457 -208731896 + AluJb SINE Alu 1 294 -18 717 139 10 178 chr1 33932460 33932500 -208731853 + L1M4c LINE L1 1551 1596 -4788 1441 199 26 36 chr1 33932500 33932807 -208731546 + AluJo SINE Alu 1 304 -8 717 139 10 178 chr1 33932807 33932864 -208731489 + L1M4c LINE L1 1596 1661 -4723 1478 106 5 0 chr1 33932864 33933062 -208731291 + AluSq SINE Alu 5 203 -110 2032 96 16 61 chr1 33933062 33933374 -208730979 + AluSx SINE Alu 1 298 -14 717 139 10 178 chr1 33933374 33933469 -208730884 + L1M4c LINE L1 1660 1711 -4673 1874 154 14 0 chr1 33933469 33933755 -208730598 + AluJb SINE Alu 9 298 -14 717 139 10 178 chr1 33933755 33933767 -208730586 + L1M4c LINE L1 1711 1723 -4661 * 1119 173 36 9 chr1 33933757 33933982 -208730371 + L1MB7 LINE L1 5809 6039 -145 2037 146 0 37 chr1 33933996 33934187 -208730166 - AluSx SINE Alu -1 311 135 2137 107 4 0 chr1 33934187 33934468 -208729885 - AluSp SINE Alu -31 282 1 2037 146 0 37 chr1 33934468 33934599 -208729754 - AluSx SINE Alu -177 135 1 289 143 0 0 chr1 33934600 33934649 -208729704 - FLAM_A SINE Alu 0 133 85 1103 241 0 0 chr1 33934649 33934869 -208729484 - AluJo SINE Alu -92 220 1 626 180 40 40 chr1 33934876 33935026 -208729327 + L1MB8 LINE L1 6024 6173 -5 236 264 90 112 chr1 33935144 33935276 -208729077 + Charlie8 DNA MER1_type 1 130 -211 2067 112 21 11 chr1 33935276 33935562 -208728791 - AluSq SINE Alu -11 302 14 236 264 90 112 chr1 33935562 33935607 -208728746 + Charlie8 DNA MER1_type 130 174 -167 223 328 114 30 chr1 33935633 33935834 -208728519 + L3 LINE CR1 1351 1568 -9 1738 173 17 3 chr1 33936279 33936574 -208727779 - AluJb SINE Alu -13 299 1 2272 108 3 0 chr1 33936954 33937251 -208727102 + AluSq SINE Alu 1 298 -15 2532 62 7 0 chr1 33937364 33937668 -208726685 + AluSp SINE Alu 1 306 -7 344 319 92 26 chr1 33937721 33937950 -208726403 - L2 LINE L2 -1158 2156 1913 205 253 4 0 chr1 33938417 33938500 -208725853 - L2 LINE L2 -309 3004 2921 487 217 123 66 chr1 33938608 33939064 -208725289 + L1MC5 LINE L1 7311 7940 -21 253 230 112 81 chr1 33939050 33939216 -208725137 + L1MC4 LINE L1 7533 7692 -350 * 2302 90 0 3 chr1 33939216 33939506 -208724847 + AluSg SINE Alu 13 301 -9 253 230 112 81 chr1 33939506 33939685 -208724668 + L1MC4 LINE L1 7692 7998 -44 2410 106 3 0 chr1 33940487 33940798 -208723555 - AluSx SINE Alu 0 312 1 488 233 15 41 chr1 33940833 33940970 -208723383 - LOR1-int LTR ERV1 -2429 4169 3835 1778 160 91 36 chr1 33940970 33941088 -208723265 - MLT1B LTR MaLR 0 390 280 2105 102 41 3 chr1 33941088 33941383 -208722970 + AluSg SINE Alu 1 306 -4 1778 160 91 36 chr1 33941383 33941627 -208722726 - MLT1B LTR MaLR -110 280 8 1559 141 0 12 chr1 33942212 33942454 -208721899 - AluJb SINE Alu -60 252 14 1481 126 56 0 chr1 33942488 33942703 -208721650 + AluSg/x SINE Alu 85 311 -1 1669 164 122 3 chr1 33942703 33943056 -208721297 - L1MB4 LINE L1 -4 6412 6018 2688 165 101 4 chr1 33943057 33943553 -208720800 - MER44D DNA MER2_type 0 605 7 819 212 104 0 chr1 33943559 33943752 -208720601 - L1MB4 LINE L1 -534 5876 5664 1925 149 17 0 chr1 33943758 33944047 -208720306 - AluSx SINE Alu -18 294 1 2378 85 0 23 chr1 33944053 33944360 -208719993 - AluY SINE Alu -11 300 1 2162 130 3 0 chr1 33944426 33944726 -208719627 - AluSx SINE Alu -11 301 1 854 231 0 20 chr1 33944781 33944976 -208719377 - L1MB4 LINE L1 -1251 5131 4941 * 1406 231 74 45 chr1 33944975 33945526 -208718827 - L1MB4 LINE L1 -3264 3118 2552 2586 142 164 92 chr1 33945526 33945956 -208718397 - L1MB4 LINE L1 -4143 2241 1844 1782 132 36 11 chr1 33945956 33946236 -208718117 - AluJb SINE Alu -5 307 21 2586 142 164 92 chr1 33946236 33946388 -208717965 - L1MB4 LINE L1 -4540 1844 1704 1509 192 7 21 chr1 33946388 33946699 -208717654 - AluJo SINE Alu 0 307 1 2586 142 164 92 chr1 33946699 33946749 -208717604 - L1MB4 LINE L1 -4680 1704 1659 1996 154 0 19 chr1 33946749 33947067 -208717286 - AluJb SINE Alu 0 312 1 2586 142 164 92 chr1 33947067 33947206 -208717147 - L1MB4 LINE L1 -4725 1659 1411 1117 166 17 0 chr1 33947207 33947388 -208716965 - AluSg/x SINE Alu -13 297 114 748 117 0 33 chr1 33947388 33947508 -208716845 - AluSx SINE Alu -159 153 38 1849 211 28 61 chr1 33947515 33947659 -208716694 - L1MB4 LINE L1 -4986 1398 1251 2336 74 30 7 chr1 33947659 33947958 -208716395 - AluSg SINE Alu -4 306 1 725 133 16 31 chr1 33947965 33948093 -208716260 - FLAM_C SINE Alu -7 126 1 1849 211 28 61 chr1 33948093 33948485 -208715868 - L1MB4 LINE L1 -5139 1245 872 682 193 0 43 chr1 33948487 33948627 -208715726 - AluJo SINE Alu -178 134 1 865 255 104 73 chr1 33948696 33949220 -208715133 - L1MEc LINE L1 -4538 1858 1309 2298 112 0 6 chr1 33949220 33949534 -208714819 - AluSx SINE Alu 0 312 1 865 255 104 73 chr1 33949534 33949656 -208714697 - L1MEc LINE L1 -5087 1309 1192 271 198 62 73 chr1 33949629 33949725 -208714628 - L1MEc LINE L1 -5486 910 816 * 2294 96 0 3 chr1 33949726 33950027 -208714326 - AluSc SINE Alu -9 300 1 906 168 0 42 chr1 33950028 33950195 -208714158 - FRAM SINE Alu -17 159 1 631 288 114 38 chr1 33950203 33950841 -208713512 - L1MEc LINE L1 -5579 817 131 254 237 171 83 chr1 33950890 33951153 -208713200 + L1M4 LINE L1 2319 2624 -3522 1649 177 17 10 chr1 33951153 33951453 -208712900 + AluJo SINE Alu 5 306 -6 254 237 171 83 chr1 33951453 33951552 -208712801 + L1M4 LINE L1 2624 2713 -3433 2526 74 0 0 chr1 33951665 33951974 -208712379 + AluY SINE Alu 1 309 -2 1217 84 36 6 chr1 33951974 33952140 -208712213 + AluSg/x SINE Alu 134 304 -8 2428 92 0 16 chr1 33952385 33952701 -208711652 + AluSq SINE Alu 1 311 -2 279 256 64 10 chr1 33952707 33952849 -208711504 + L1ME LINE L1 5328 5474 -690 2287 112 0 0 chr1 33952966 33953260 -208711093 + AluSx SINE Alu 1 294 -18 250 167 0 0 chr1 33953260 33953296 -208711057 + Charlie1 DNA MER1_type 1 36 -2725 526 270 7 27 chr1 33953325 33953473 -208710880 - MIR SINE MIR -114 148 4 2413 91 3 10 chr1 33953931 33954240 -208710113 + AluSq SINE Alu 5 311 -2 2244 109 0 34 chr1 33954412 33954732 -208709621 - AluSg SINE Alu -1 309 1 1695 122 3 99 chr1 33954805 33955158 -208709195 - AluJb SINE Alu 0 323 1 561 184 0 0 chr1 33955198 33955296 -208709057 - AluSg/x SINE Alu -6 304 207 2318 171 75 12 chr1 33955328 33955824 -208708529 - Tigger7 DNA MER2_type 0 2491 1 462 305 71 13 chr1 33956572 33956996 -208707357 + L2 LINE L2 2800 3312 -1 2085 98 17 3 chr1 33957495 33957792 -208706561 - L1MA1 LINE L1 0 6302 6002 244 196 0 0 chr1 33958012 33958058 -208706295 + MIR SINE MIR 76 121 -141 362 265 43 43 chr1 33958108 33958270 -208706083 - MIR3 SINE MIR -25 183 22 449 202 45 0 chr1 33958669 33958758 -208705595 + MER21B LTR ERV1 1 93 -770 625 236 135 0 chr1 33958758 33958936 -208705417 + MER21B LTR ERV1 591 792 -71 2410 82 0 10 chr1 33959119 33959422 -208704931 + AluSg SINE Alu 2 301 -9 1805 129 42 21 chr1 33959976 33960263 -208704090 + AluJb SINE Alu 1 293 -19 2401 95 0 0 chr1 33961656 33961952 -208702401 + AluSg SINE Alu 1 296 -14 2542 35 0 0 chr1 33961952 33962232 -208702121 + AluY SINE Alu 27 308 -3 4668 155 63 32 chr1 33963021 33963999 -208700354 - L1MB3 LINE L1 -15 6168 5153 1693 162 0 46 chr1 33964005 33964307 -208700046 - AluJb SINE Alu -22 290 3 736 160 30 15 chr1 33964319 33964450 -208699903 - FLAM_A SINE Alu 0 133 1 1755 144 3 46 chr1 33964508 33964814 -208699539 + AluJb SINE Alu 1 293 -19 711 180 0 16 chr1 33964707 33964817 -208699536 + AluJb SINE Alu 187 307 0 2278 104 0 0 chr1 33964817 33965140 -208699213 + AluSx SINE Alu 1 323 0 2358 83 0 0 chr1 33965446 33965747 -208698606 + AluSg SINE Alu 1 301 -9 2071 79 7 31 chr1 33965749 33966064 -208698289 + AluY SINE Alu 1 308 0 1195 161 66 0 chr1 33966772 33966983 -208697370 + AluJb SINE Alu 86 310 -2 1474 201 10 17 chr1 33966990 33967279 -208697074 + AluJo SINE Alu 6 292 -20 1552 107 5 5 chr1 33967365 33967581 -208696772 - AluSx SINE Alu -86 226 11 1901 116 21 14 chr1 33968194 33968479 -208695874 + AluJo SINE Alu 9 295 -17 2313 77 0 43 chr1 33968536 33968861 -208695492 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 33968870 33968892 -208695461 + AT_rich Low_complexity Low_complexity 1 22 0 212 286 95 9 chr1 33969532 33969637 -208694716 - MIR3 SINE MIR -90 118 5 189 121 0 0 chr1 33970324 33970357 -208693996 + (T)n Simple_repeat Simple_repeat 1 33 0 195 42 0 0 chr1 33971076 33971100 -208693253 + (TTC)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr1 33972275 33972296 -208692057 + (A)n Simple_repeat Simple_repeat 1 21 0 2330 73 3 3 chr1 33974604 33974906 -208689447 + AluSg SINE Alu 1 302 -8 1752 127 34 31 chr1 33974917 33975208 -208689145 + AluSx SINE Alu 1 292 -20 502 262 76 34 chr1 33975804 33976041 -208688312 - L1ME1 LINE L1 -5 6161 5915 2226 88 10 7 chr1 33976086 33976382 -208687971 - AluSq SINE Alu -16 297 1 288 292 94 0 chr1 33976443 33976539 -208687814 + Charlie8 DNA MER1_type 1 105 -2312 1552 186 14 3 chr1 33976601 33976891 -208687462 + AluJo SINE Alu 1 293 -19 589 158 175 0 chr1 33977329 33977443 -208686910 - MER46A DNA MER2_type -1 235 102 590 244 120 19 chr1 33978095 33978304 -208686049 + MIR SINE MIR 33 262 0 372 295 49 8 chr1 33978309 33978431 -208685922 - MIR SINE MIR -62 146 20 381 299 52 15 chr1 33980923 33981057 -208683296 + MIR3 SINE MIR 20 158 -50 424 275 106 73 chr1 33981141 33981359 -208682994 - Charlie8 DNA MER1_type -2190 227 3 2233 93 3 3 chr1 33981480 33981781 -208682572 + AluSq SINE Alu 1 301 -12 2084 113 0 3 chr1 33981898 33982189 -208682164 + AluSg SINE Alu 12 301 -9 2139 81 0 3 chr1 33982242 33982525 -208681828 - AluY SINE Alu -29 282 1 2339 62 3 13 chr1 33982525 33982831 -208681522 - AluY SINE Alu -8 303 1 2140 85 13 19 chr1 33982831 33983138 -208681215 - AluSc SINE Alu -4 305 1 218 368 21 0 chr1 33983390 33983485 -208680868 - L2 LINE L2 -2 3270 3174 254 243 155 34 chr1 33984154 33984302 -208680051 - L1MC5 LINE L1 -520 7441 7276 309 82 0 0 chr1 33984458 33984507 -208679846 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2153 65 0 27 chr1 33984507 33984801 -208679552 - AluY SINE Alu -25 286 1 2123 108 0 3 chr1 33984803 33985099 -208679254 - AluSc SINE Alu -14 295 1 247 215 46 0 chr1 33985164 33985229 -208679124 + MIR SINE MIR 124 191 -71 653 286 342 6 chr1 33985257 33985898 -208678455 - L2 LINE L2 -1655 1659 804 1060 189 96 0 chr1 33985900 33986027 -208678326 + MER33 DNA MER1_type 1 114 -2471 1573 101 83 29 chr1 33986027 33986303 -208678050 - AluSx SINE Alu -21 291 1 1060 189 96 0 chr1 33986303 33986466 -208677887 + MER33 DNA MER1_type 114 319 -5 533 313 48 15 chr1 33986470 33986742 -208677611 - L2 LINE L2 -2510 804 524 294 111 123 0 chr1 33987372 33987453 -208676900 - Charlie5 DNA MER1_type -67 2545 2455 1930 149 3 0 chr1 33987458 33987754 -208676599 + AluSx SINE Alu 1 297 -15 334 202 219 44 chr1 33988062 33988176 -208676177 - L1ME4a LINE L1 -148 5973 5840 525 289 75 30 chr1 33988187 33988492 -208675861 - L1ME4a LINE L1 -319 5802 5484 2117 101 7 23 chr1 33988632 33988939 -208675414 - AluSg SINE Alu -5 305 4 686 262 196 14 chr1 33989550 33989836 -208674517 - MER46C DNA MER2_type 0 338 1 2301 96 0 3 chr1 33989912 33990215 -208674138 + AluSx SINE Alu 1 302 -10 194 276 0 46 chr1 33990845 33990932 -208673421 + L2 LINE L2 2503 2585 -729 1987 106 3 72 chr1 33992596 33992628 -208671725 - AluSx SINE Alu -4 308 275 288 0 0 0 chr1 33992628 33992660 -208671693 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1987 106 3 72 chr1 33992660 33992958 -208671395 - AluSx SINE Alu -37 275 1 199 324 29 0 chr1 33993344 33993412 -208670941 - MIR SINE MIR -173 89 20 216 318 106 8 chr1 33993659 33993791 -208670562 - MIR SINE MIR -48 214 70 348 111 0 0 chr1 33995057 33995111 -208669242 + (T)n Simple_repeat Simple_repeat 1 54 0 262 198 128 23 chr1 33999256 33999342 -208665011 + MIR SINE MIR 132 226 -36 202 146 24 0 chr1 33999427 33999468 -208664885 + CT-rich Low_complexity Low_complexity 1 42 0 1970 137 10 0 chr1 34001954 34002247 -208662106 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr1 34002247 34002270 -208662083 + AT_rich Low_complexity Low_complexity 1 23 0 1949 129 3 3 chr1 34002276 34002579 -208661774 + AluSx SINE Alu 1 303 -9 258 346 29 0 chr1 34002652 34002756 -208661597 - MIR SINE MIR -84 124 18 260 268 49 0 chr1 34005883 34005965 -208658388 + MIR3 SINE MIR 94 179 -29 2061 114 0 17 chr1 34007418 34007715 -208656638 + AluSx SINE Alu 1 292 -20 2289 98 0 9 chr1 34009012 34009147 -208655206 + AluSx SINE Alu 1 136 -176 2200 102 7 0 chr1 34009147 34009450 -208654903 + AluSp SINE Alu 1 305 -8 2289 98 0 9 chr1 34009450 34009629 -208654724 + AluSx SINE Alu 136 312 0 266 221 214 2 chr1 34009644 34009753 -208654600 + MIR SINE MIR 35 167 -85 1934 107 34 21 chr1 34009816 34010107 -208654246 - AluJo SINE Alu -17 295 1 2191 94 0 23 chr1 34011990 34012297 -208652056 - AluSg SINE Alu -10 300 1 682 127 9 27 chr1 34012300 34012410 -208651943 - AluJo/FLAM SINE Alu -181 131 24 2145 84 13 45 chr1 34012438 34012605 -208651748 - AluSp SINE Alu -13 300 146 2480 56 0 7 chr1 34012605 34012911 -208651442 - AluY SINE Alu -7 304 1 2145 84 13 45 chr1 34012911 34013053 -208651300 - AluSp SINE Alu -167 146 1 302 261 28 103 chr1 34013054 34013133 -208651220 - MIR SINE MIR -62 146 111 2144 111 0 10 chr1 34013133 34013439 -208650914 + AluSx SINE Alu 5 307 -5 302 261 28 103 chr1 34013439 34013513 -208650840 - MIR SINE MIR -97 111 33 198 169 153 0 chr1 34015812 34015871 -208648482 - MIR SINE MIR -93 169 102 302 283 262 5 chr1 34016804 34016995 -208647358 - MIR SINE MIR -4 258 19 2463 76 0 10 chr1 34017242 34017544 -208646809 + AluSq SINE Alu 1 299 -14 361 66 82 0 chr1 34017558 34017619 -208646734 + L1MB1 LINE L1 6111 6176 -13 2270 102 0 10 chr1 34017622 34017757 -208646596 + AluSp SINE Alu 1 136 -177 2401 108 0 0 chr1 34017757 34018064 -208646289 + AluSx SINE Alu 1 307 -5 2270 102 0 10 chr1 34018064 34018231 -208646122 + AluSp SINE Alu 136 300 -13 1640 172 69 0 chr1 34018483 34018774 -208645579 - AluJb SINE Alu -1 311 1 288 300 138 19 chr1 34018917 34019077 -208645276 + MIR SINE MIR 84 262 0 2273 118 0 7 chr1 34019272 34019578 -208644775 - AluSx SINE Alu -8 304 1 362 256 231 19 chr1 34019795 34019955 -208644398 - MIR SINE MIR -16 246 53 217 333 74 7 chr1 34020492 34020627 -208643726 + L2 LINE L2 2972 3115 -157 690 286 75 4 chr1 34020698 34020925 -208643428 - MIR SINE MIR 0 262 20 1468 128 86 4 chr1 34021916 34022150 -208642203 + AluJo SINE Alu 1 253 -59 2444 83 0 3 chr1 34022384 34022686 -208641667 - AluSx SINE Alu -11 301 1 459 271 33 8 chr1 34022690 34022812 -208641541 - MIR SINE MIR -65 143 19 2234 106 6 34 chr1 34023762 34023940 -208640413 - AluSx SINE Alu 0 312 145 2349 102 0 7 chr1 34023940 34024235 -208640118 - AluSx SINE Alu -19 293 1 2234 106 6 34 chr1 34024235 34024377 -208639976 - AluSx SINE Alu -167 145 1 234 283 91 10 chr1 34024386 34024485 -208639868 - L2 LINE L2 -32 3240 3134 2035 107 50 0 chr1 34024562 34024842 -208639511 + AluSq SINE Alu 1 294 -19 2552 50 10 7 chr1 34024842 34025145 -208639208 + AluY SINE Alu 1 304 -7 1857 105 0 12 chr1 34025669 34025917 -208638436 - AluSx SINE Alu -13 299 55 1987 97 0 26 chr1 34025927 34026195 -208638158 - AluSx SINE Alu -5 307 47 1067 133 19 0 chr1 34026243 34026401 -208637952 + FRAM SINE Alu 11 171 -5 345 270 40 66 chr1 34026434 34026586 -208637767 + MIR SINE MIR 51 198 -64 1821 168 10 7 chr1 34026595 34026886 -208637467 + AluJo SINE Alu 1 292 -20 285 332 189 29 chr1 34026933 34027213 -208637140 - L2 LINE L2 -31 3241 2917 2193 72 55 14 chr1 34028358 34028649 -208635704 - AluY SINE Alu -8 303 1 2308 116 0 0 chr1 34028649 34028952 -208635401 - AluSx SINE Alu -9 303 1 417 248 38 45 chr1 34028960 34029117 -208635236 + MIR SINE MIR 107 262 0 872 120 0 0 chr1 34029171 34029288 -208635065 - FLAM_C SINE Alu -26 117 1 1013 164 38 6 chr1 34029332 34029515 -208634838 - AluJb SINE Alu -2 310 122 761 194 6 0 chr1 34029696 34029861 -208634492 + CT-rich Low_complexity Low_complexity 3 168 0 395 315 61 20 chr1 34029948 34030145 -208634208 - L3 LINE CR1 -11 1566 1362 1075 91 0 0 chr1 34030484 34030616 -208633737 + AluSq/x SINE Alu 1 132 -180 2285 104 7 0 chr1 34030619 34030918 -208633435 + AluSp SINE Alu 1 301 -12 2268 73 0 0 chr1 34030918 34031190 -208633163 + AluY SINE Alu 1 272 -39 42 36 0 0 chr1 34031190 34031246 -208633107 + AT_rich Low_complexity Low_complexity 1 56 0 267 224 149 45 chr1 34031354 34031488 -208632865 + L2 LINE L2 2904 3051 -262 705 164 168 77 chr1 34031488 34031708 -208632645 - AluJo SINE Alu -9 303 64 960 138 0 0 chr1 34031711 34031849 -208632504 + AluJb SINE Alu 160 297 -15 359 109 0 0 chr1 34031858 34031913 -208632440 + HY3 scRNA scRNA 46 100 -1 278 262 117 39 chr1 34032206 34032309 -208632044 - L2 LINE L2 -3 3310 3200 2397 81 10 0 chr1 34033043 34033341 -208631012 - AluSp SINE Alu -8 305 5 815 224 6 0 chr1 34033367 34033528 -208630825 - FAM SINE Alu -13 162 1 470 263 143 0 chr1 34033561 34033694 -208630659 + MIR SINE MIR 71 222 -40 1919 162 0 29 chr1 34033697 34034012 -208630341 + AluSq SINE Alu 1 306 -7 303 117 19 39 chr1 34034012 34034115 -208630238 + (TA)n Simple_repeat Simple_repeat 2 102 0 2056 111 15 7 chr1 34034192 34034490 -208629863 + AluSx SINE Alu 9 308 0 2287 116 3 0 chr1 34035054 34035355 -208628998 - AluSg SINE Alu -6 304 3 2019 137 0 7 chr1 34035503 34035842 -208628511 - AluSg SINE Alu 0 337 1 348 316 94 16 chr1 34035847 34036103 -208628250 + Charlie8 DNA MER1_type 57 204 -2213 2264 108 0 23 chr1 34036277 34036583 -208627770 - AluSg SINE Alu -11 299 1 1205 166 0 20 chr1 34036876 34037075 -208627278 - AluJb SINE Alu 0 312 118 1771 157 12 49 chr1 34037082 34037406 -208626947 - AluJb SINE Alu 0 312 1 261 154 19 19 chr1 34037410 34037462 -208626891 - MIR SINE MIR -61 147 96 2357 97 7 3 chr1 34037613 34037922 -208626431 + AluSg SINE Alu 1 310 0 456 178 164 34 chr1 34039578 34039724 -208624629 - MER117 DNA MER1_type -8 189 25 1975 128 55 0 chr1 34039726 34040016 -208624337 + AluSx SINE Alu 1 306 -6 2250 117 7 0 chr1 34040380 34040678 -208623675 + AluSp SINE Alu 2 301 -12 267 31 0 0 chr1 34042151 34042183 -208622170 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2066 111 3 35 chr1 34042183 34042334 -208622019 - AluSx SINE Alu -33 279 140 2133 108 0 7 chr1 34042334 34042622 -208621731 - AluSc SINE Alu -23 286 1 2066 111 3 35 chr1 34042622 34042758 -208621595 - AluSx SINE Alu -172 140 1 270 328 160 0 chr1 34042768 34042899 -208621454 - MIR SINE MIR -105 157 6 2202 114 0 23 chr1 34043184 34043491 -208620862 + AluSx SINE Alu 1 300 -12 2234 84 35 0 chr1 34044504 34044788 -208619565 - AluSc SINE Alu -15 294 1 249 312 43 0 chr1 34045021 34045114 -208619239 + L2 LINE L2 1846 1942 -1372 182 270 48 16 chr1 34045114 34045177 -208619176 + L2 LINE L2 2732 2796 -518 1957 203 118 0 chr1 34045234 34045667 -208618686 + MER44D DNA MER2_type 12 495 -210 2251 95 0 14 chr1 34045668 34045964 -208618389 - AluY SINE Alu -19 292 1 2253 84 28 3 chr1 34045973 34046260 -208618093 - AluSq SINE Alu -19 294 1 1159 175 65 104 chr1 34046261 34046569 -208617784 - AluJo SINE Alu -8 304 9 358 69 0 0 chr1 34046579 34046637 -208617716 - AluSp/q SINE Alu 0 303 246 246 302 13 31 chr1 34046813 34046972 -208617381 + (TCTCTG)n Simple_repeat Simple_repeat 3 158 0 * 398 357 11 14 chr1 34046922 34047162 -208617191 + CT-rich Low_complexity Low_complexity 1 239 0 248 352 7 14 chr1 34047186 34047331 -208617022 + CT-rich Low_complexity Low_complexity 1 144 0 185 156 0 44 chr1 34047357 34047402 -208616951 + CT-rich Low_complexity Low_complexity 2 44 0 397 261 26 9 chr1 34048565 34048680 -208615673 - MIR3 SINE MIR -38 170 54 372 337 64 0 chr1 34048780 34048952 -208615401 - MIR SINE MIR -6 256 74 2221 96 13 3 chr1 34049165 34049467 -208614886 - AluSp SINE Alu -8 305 1 374 164 14 14 chr1 34049477 34049550 -208614803 - MER20 DNA MER1_type -3 216 144 278 67 0 22 chr1 34049575 34049620 -208614733 + AluSp/q SINE Alu 254 297 -6 605 118 11 0 chr1 34049620 34049713 -208614640 - MER20 DNA MER1_type -84 135 42 259 211 19 0 chr1 34049889 34049941 -208614412 - MIR SINE MIR 0 262 210 2062 149 0 0 chr1 34049976 34050277 -208614076 + AluJb SINE Alu 1 301 -11 330 322 63 35 chr1 34050375 34050518 -208613835 + MIR3 SINE MIR 3 149 -59 2193 137 0 3 chr1 34050519 34050832 -208613521 + AluSx SINE Alu 1 312 0 222 37 0 0 chr1 34050990 34051017 -208613336 + (TA)n Simple_repeat Simple_repeat 1 27 0 2482 70 0 10 chr1 34051018 34051316 -208613037 - AluY SINE Alu -16 295 1 22 56 0 0 chr1 34051317 34051353 -208613000 + AT_rich Low_complexity Low_complexity 1 36 0 214 42 42 62 chr1 34051353 34051401 -208612952 + (TAAAAA)n Simple_repeat Simple_repeat 3 49 0 1894 110 0 0 chr1 34051405 34051650 -208612703 + AluSq SINE Alu 1 245 -68 1353 115 0 6 chr1 34051650 34051833 -208612520 - AluSg SINE Alu -128 182 1 524 244 114 28 chr1 34052088 34052189 -208612164 - Charlie8 DNA MER1_type -65 265 174 1629 148 10 77 chr1 34052189 34052500 -208611853 - AluJo SINE Alu -22 290 1 524 244 114 28 chr1 34052500 34052574 -208611779 - Charlie8 DNA MER1_type -156 174 75 309 140 0 0 chr1 34052574 34052624 -208611729 + L2 LINE L2 2666 2715 -599 1911 166 0 3 chr1 34052624 34052925 -208611428 + AluJb SINE Alu 1 300 -12 2325 59 0 4 chr1 34052927 34053200 -208611153 + AluY SINE Alu 1 272 -39 42 36 0 0 chr1 34053200 34053256 -208611097 + AT_rich Low_complexity Low_complexity 1 56 0 267 224 149 45 chr1 34053362 34053496 -208610857 + L2 LINE L2 2904 3051 -262 705 164 168 77 chr1 34053496 34053716 -208610637 - AluJo SINE Alu -9 303 64 960 138 0 0 chr1 34053719 34053857 -208610496 + AluJb SINE Alu 160 297 -15 359 109 0 0 chr1 34053866 34053921 -208610432 + HY3 scRNA scRNA 46 100 -1 278 262 117 39 chr1 34054214 34054317 -208610036 - L2 LINE L2 -3 3310 3200 2397 81 10 0 chr1 34055051 34055349 -208609004 - AluSp SINE Alu -8 305 5 815 224 6 0 chr1 34055375 34055536 -208608817 - FAM SINE Alu -13 162 1 470 263 143 0 chr1 34055569 34055702 -208608651 + MIR SINE MIR 71 222 -40 1919 162 0 29 chr1 34055705 34056020 -208608333 + AluSq SINE Alu 1 306 -7 303 117 19 39 chr1 34056020 34056123 -208608230 + (TA)n Simple_repeat Simple_repeat 2 102 0 2056 111 15 7 chr1 34056200 34056498 -208607855 + AluSx SINE Alu 9 308 0 2330 109 3 0 chr1 34057062 34057365 -208606988 - AluSg SINE Alu -6 304 1 2019 137 0 7 chr1 34057512 34057851 -208606502 - AluSg SINE Alu 0 337 1 348 316 94 16 chr1 34057856 34058112 -208606241 + Charlie8 DNA MER1_type 57 215 -2202 2264 108 0 23 chr1 34058286 34058592 -208605761 - AluSg SINE Alu -11 299 1 1205 166 0 20 chr1 34058885 34059084 -208605269 - AluJb SINE Alu 0 312 118 1771 157 12 49 chr1 34059091 34059415 -208604938 - AluJb SINE Alu 0 312 1 261 154 19 19 chr1 34059419 34059471 -208604882 - MIR SINE MIR -61 147 96 2357 97 7 3 chr1 34059622 34059931 -208604422 + AluSg SINE Alu 1 310 0 465 167 133 94 chr1 34061588 34061736 -208602617 - MER117 DNA MER1_type -8 189 31 2071 122 21 0 chr1 34061736 34062024 -208602329 + AluSx SINE Alu 1 294 -18 465 167 133 94 chr1 34062024 34062055 -208602298 - MER117 DNA MER1_type -166 31 3 2036 150 0 10 chr1 34062185 34062479 -208601874 - AluJo SINE Alu -19 293 3 543 264 104 6 chr1 34062483 34062665 -208601688 - MIR SINE MIR -38 224 25 292 246 62 54 chr1 34062712 34062842 -208601511 - MIR3 SINE MIR -69 139 9 2309 85 10 20 chr1 34063141 34063447 -208600906 - AluSg SINE Alu -7 303 1 225 301 23 0 chr1 34065730 34065827 -208598526 + MIR SINE MIR 39 138 -70 367 125 0 23 chr1 34066943 34067031 -208597322 + (CA)n Simple_repeat Simple_repeat 1 86 0 200 222 9 0 chr1 34067065 34067173 -208597180 + (CA)n Simple_repeat Simple_repeat 1 109 0 185 208 14 0 chr1 34067215 34067287 -208597066 + (CA)n Simple_repeat Simple_repeat 1 73 0 398 191 11 27 chr1 34067346 34067529 -208596824 + (CA)n Simple_repeat Simple_repeat 1 180 0 294 147 0 0 chr1 34067552 34067620 -208596733 + (CA)n Simple_repeat Simple_repeat 1 68 0 323 293 6 64 chr1 34067637 34067721 -208596632 + L2 LINE L2 2888 2975 -297 801 49 0 0 chr1 34067721 34067823 -208596530 + (TC)n Simple_repeat Simple_repeat 2 103 0 1564 169 60 0 chr1 34067823 34068090 -208596263 - AluJo SINE Alu -29 283 1 323 293 6 64 chr1 34068090 34068161 -208596192 + L2 LINE L2 2973 3035 -237 1594 117 0 0 chr1 34068169 34068374 -208595979 - AluSx SINE Alu -87 225 21 372 199 107 69 chr1 34068654 34068707 -208595646 - MIR3 SINE MIR -12 196 147 1470 211 48 3 chr1 34068707 34069001 -208595352 - AluJo SINE Alu -5 307 1 372 199 107 69 chr1 34069001 34069090 -208595263 - MIR3 SINE MIR -61 147 57 2029 159 0 7 chr1 34069093 34069394 -208594959 + AluJo SINE Alu 1 299 -13 2348 107 0 13 chr1 34069394 34069703 -208594650 + AluSc SINE Alu 1 305 -4 2362 78 0 0 chr1 34069705 34069987 -208594366 + AluSg SINE Alu 3 284 -26 1326 151 86 62 chr1 34069992 34070283 -208594070 + AluSx SINE Alu 1 298 -14 333 277 84 13 chr1 34070360 34070550 -208593803 + MIR SINE MIR 21 222 -40 2319 102 0 0 chr1 34070664 34070958 -208593395 + AluSg SINE Alu 1 294 -16 2086 128 0 3 chr1 34070959 34071241 -208593112 - AluSx SINE Alu -31 281 1 1006 116 116 70 chr1 34071255 34071454 -208592899 - AluY SINE Alu -1 310 103 9957 87 1 56 chr1 34071555 34073116 -208591237 - L1P LINE L1 -4657 1489 14 431 239 45 11 chr1 34073113 34073253 -208591100 - L1M4c LINE L1 -4738 1646 1533 * 4514 166 18 23 chr1 34073274 34074370 -208589983 - L1PA16 LINE L1 -11 6155 5068 779 247 8 4 chr1 34074373 34074616 -208589737 - L1M4c LINE L1 -3156 3226 2983 1440 246 42 8 chr1 34074626 34075146 -208589207 - L1M4c LINE L1 -4846 1538 1001 1011 271 41 35 chr1 34075125 34075355 -208588998 - L1M4 LINE L1 -942 5440 5213 * 1313 244 101 19 chr1 34075355 34075630 -208588723 - MLT1D LTR MaLR 0 505 254 381 22 0 0 chr1 34075630 34075676 -208588677 + (CA)n Simple_repeat Simple_repeat 2 47 0 1313 244 101 19 chr1 34075676 34075867 -208588486 - MLT1D LTR MaLR -251 254 1 1011 271 41 35 chr1 34075867 34076149 -208588204 - L1M4 LINE L1 -1169 5213 4925 1163 315 56 7 chr1 34076869 34077298 -208587055 - LTR33 LTR ERVL -71 450 1 440 356 0 12 chr1 34077358 34077518 -208586835 - MER52A LTR ERV1 0 1755 1598 465 265 14 96 chr1 34077540 34077759 -208586594 - MER52A LTR ERV1 -303 1452 1252 947 234 175 107 chr1 34077761 34078406 -208585947 - MER52A LTR ERV1 -407 1348 660 250 298 156 28 chr1 34078964 34079105 -208585248 - MIR3 SINE MIR -20 188 30 291 292 83 21 chr1 34079518 34079614 -208584739 + L2 LINE L2 2685 2786 -528 33 56 0 0 chr1 34079754 34079808 -208584545 + AT_rich Low_complexity Low_complexity 1 54 0 2692 102 5 11 chr1 34080226 34080600 -208583753 + THE1C LTR MaLR 3 374 -1 2227 157 11 13 chr1 34080642 34081018 -208583335 + THE1C LTR MaLR 1 375 0 8629 132 69 48 chr1 34081018 34082561 -208581792 + THE1C-int LTR MaLR 1 1576 -4 1451 165 100 16 chr1 34082565 34082886 -208581467 + THE1C LTR MaLR 1 348 -27 6123 210 40 15 chr1 34083124 34083950 -208580403 + L1 LINE L1 3495 4299 -1847 2416 89 0 0 chr1 34083950 34084241 -208580112 - AluSc SINE Alu -18 291 1 6123 210 40 15 chr1 34084241 34084311 -208580042 + L1 LINE L1 4299 4366 -1780 246 81 0 0 chr1 34084311 34084348 -208580005 + (CA)n Simple_repeat Simple_repeat 1 37 0 6123 210 40 15 chr1 34084348 34085054 -208579299 + L1 LINE L1 4366 5138 -1008 382 324 22 15 chr1 34085507 34085643 -208578710 - MIR SINE MIR -120 142 6 1128 214 80 68 chr1 34086091 34086531 -208577822 - LTR56 LTR ERV1 0 445 1 233 323 31 0 chr1 34086628 34086693 -208577660 - MIR SINE MIR -111 97 31 414 221 130 8 chr1 34087023 34087154 -208577199 - MER69 DNA AcHobo 0 2526 2380 268 261 0 29 chr1 34087281 34087350 -208577003 - MER69 DNA AcHobo -1159 67 1 287 316 115 37 chr1 34087574 34087818 -208576535 + L2 LINE L2 2498 2760 -554 662 129 0 0 chr1 34087919 34088020 -208576333 - LTR12 LTR ERV1 -133 581 481 393 246 17 0 chr1 34088021 34088139 -208576214 - LTR30 LTR ERV1 -79 643 524 494 187 77 0 chr1 34088303 34088394 -208575959 - AluJ/FLAM SINE Alu -213 99 2 309 300 138 19 chr1 34088538 34088698 -208575655 + MIR SINE MIR 84 262 0 2261 118 0 7 chr1 34088893 34089199 -208575154 - AluSx SINE Alu -8 304 1 398 264 218 17 chr1 34089416 34089590 -208574763 - MIR SINE MIR -16 246 38 243 333 74 7 chr1 34090113 34090248 -208574105 + L2 LINE L2 2972 3115 -157 737 286 75 4 chr1 34090319 34090546 -208573807 - MIR SINE MIR 0 262 20 1450 128 86 4 chr1 34091537 34091771 -208572582 + AluJo SINE Alu 1 253 -59 2433 83 0 3 chr1 34092005 34092307 -208572046 - AluSx SINE Alu -11 301 1 489 271 33 8 chr1 34092311 34092433 -208571920 - MIR SINE MIR -65 143 19 2315 97 7 10 chr1 34093385 34093694 -208570659 - AluSg SINE Alu -2 308 1 439 125 0 0 chr1 34093695 34093759 -208570594 + AluSg/x SINE Alu 185 248 -62 1095 143 27 80 chr1 34093759 34093983 -208570370 + AluJb SINE Alu 85 296 -16 31 0 0 0 chr1 34093983 34094014 -208570339 + AT_rich Low_complexity Low_complexity 1 31 0 1859 171 4 0 chr1 34094135 34094448 -208569905 + AluJb SINE Alu 1 314 0 283 183 134 37 chr1 34094458 34094540 -208569813 + U3 snRNA snRNA 1 90 -127 700 161 81 16 chr1 34094622 34094746 -208569607 + AluJo/FLAM SINE Alu 2 133 -169 1654 109 0 5 chr1 34094746 34094956 -208569397 + AluSc SINE Alu 1 209 -100 291 77 0 0 chr1 34094956 34095046 -208569307 + AluSc SINE Alu 242 331 0 1011 128 11 91 chr1 34095206 34095393 -208568960 - AluJ SINE Alu -4 308 137 306 50 0 0 chr1 34095393 34095433 -208568920 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2109 114 3 17 chr1 34095433 34095723 -208568630 - AluSx SINE Alu -26 286 1 297 75 0 0 chr1 34095731 34095771 -208568582 + (T)n Simple_repeat Simple_repeat 1 40 0 884 144 7 55 chr1 34095795 34095941 -208568412 - AluJ SINE Alu -169 143 5 1387 160 0 5 chr1 34096024 34096236 -208568117 - AluJb SINE Alu -17 295 85 2274 77 0 74 chr1 34096237 34096561 -208567792 - AluSg SINE Alu -10 300 1 931 154 6 74 chr1 34096564 34096739 -208567614 - FRAM SINE Alu -3 163 1 2025 162 0 0 chr1 34096758 34097060 -208567293 - AluJo SINE Alu -10 302 1 1931 158 0 19 chr1 34097508 34097824 -208566529 + AluJb SINE Alu 3 312 0 451 240 6 101 chr1 34097829 34098008 -208566345 + MIR SINE MIR 72 233 -29 304 176 59 12 chr1 34098089 34098174 -208566179 + MER113 DNA MER1_type? 108 196 -325 282 240 0 40 chr1 34098373 34098448 -208565905 + AluJo/FLAM SINE Alu 49 120 -182 2151 90 0 8 chr1 34098451 34098719 -208565634 - AluSq SINE Alu -19 294 29 1370 113 6 0 chr1 34098727 34098934 -208565419 + AluSg/x SINE Alu 104 311 0 822 169 0 0 chr1 34098952 34099076 -208565277 - FLAM_C SINE Alu -9 124 1 992 194 6 6 chr1 34099090 34099265 -208565088 + FRAM SINE Alu 1 170 -6 301 263 26 0 chr1 34099265 34099341 -208565012 - L2 LINE L2 -20 3293 3216 718 273 32 28 chr1 34099699 34099915 -208564438 - MIR SINE MIR -38 224 8 811 132 0 76 chr1 34100051 34100195 -208564158 - FLAM_C SINE Alu 0 133 1 2369 93 3 6 chr1 34100250 34100563 -208563790 + AluSp SINE Alu 1 312 -1 635 143 0 0 chr1 34100567 34100658 -208563695 + AluSg/x SINE Alu 125 215 -95 1234 120 0 6 chr1 34100658 34100825 -208563528 - AluSx SINE Alu -146 166 1 574 160 11 0 chr1 34100828 34100922 -208563431 - FRAM SINE Alu -19 157 63 273 29 0 0 chr1 34101186 34101220 -208563133 + (TG)n Simple_repeat Simple_repeat 1 34 0 1636 86 14 5 chr1 34101480 34101690 -208562663 + AluSc SINE Alu 1 212 -97 2015 129 17 0 chr1 34101691 34101978 -208562375 - AluSq SINE Alu -21 292 1 297 142 30 67 chr1 34101980 34102046 -208562307 - MIR SINE MIR -62 146 89 432 37 0 0 chr1 34103118 34103172 -208561181 + (TC)n Simple_repeat Simple_repeat 1 54 0 335 303 7 42 chr1 34103287 34103429 -208560924 + MIR3 SINE MIR 60 196 -12 186 304 58 0 chr1 34105265 34105334 -208559019 - MIR SINE MIR -109 153 81 2327 97 10 0 chr1 34105341 34105641 -208558712 + AluSq SINE Alu 10 312 -1 1426 153 0 139 chr1 34105652 34106005 -208558348 + AluSx SINE Alu 1 304 -8 309 274 19 47 chr1 34106856 34106962 -208557391 + MER5B DNA MER1_type 27 129 -49 356 218 196 15 chr1 34108147 34108280 -208556073 + MIR3 SINE MIR 30 186 -22 2200 120 7 0 chr1 34108405 34108704 -208555649 + AluY SINE Alu 1 301 -10 306 73 0 0 chr1 34108722 34108763 -208555590 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 913 165 51 76 chr1 34108768 34108817 -208555536 - L1ME3A LINE L1 -16 6154 6105 2141 104 7 0 chr1 34108817 34109124 -208555229 + AluSq SINE Alu 6 314 0 913 165 51 76 chr1 34109124 34109310 -208555043 - L1ME3A LINE L1 -65 6105 5924 918 146 44 6 chr1 34109310 34109468 -208554885 - MER5A DNA MER1_type -2 187 24 1107 183 9 43 chr1 34109485 34109715 -208554638 - AluJo SINE Alu -16 296 75 2414 53 0 11 chr1 34109715 34109999 -208554354 + AluY SINE Alu 1 281 -30 1212 160 45 80 chr1 34109999 34110311 -208554042 + AluJb SINE Alu 2 302 -10 2183 96 33 3 chr1 34110364 34110667 -208553686 - AluSx SINE Alu 0 312 1 2422 89 0 3 chr1 34110669 34110973 -208553380 - AluY SINE Alu -8 303 1 2105 127 10 3 chr1 34110975 34111275 -208553078 - AluJb SINE Alu -5 307 6 2274 123 3 0 chr1 34111304 34111614 -208552739 - AluSx SINE Alu -1 311 1 2188 141 0 0 chr1 34111614 34111917 -208552436 - AluSx SINE Alu -8 304 1 243 0 0 0 chr1 34111952 34111979 -208552374 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 748 138 0 43 chr1 34111982 34112120 -208552233 + FLAM_C SINE Alu 1 132 -11 527 77 0 13 chr1 34112572 34112650 -208551703 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 2173 96 20 0 chr1 34112650 34112951 -208551402 - AluSq SINE Alu -6 307 1 1092 75 0 8 chr1 34112954 34113088 -208551265 - AluSq/x SINE Alu -179 133 1 202 233 0 0 chr1 34113197 34113240 -208551113 - MIR SINE MIR -101 161 119 256 273 157 16 chr1 34115337 34115458 -208548895 - L3 LINE CR1 -108 1469 1332 182 229 82 16 chr1 34115608 34115669 -208548684 + L2 LINE L2 3184 3248 -24 294 353 96 6 chr1 34115763 34115919 -208548434 - L2 LINE L2 -254 3059 2890 673 140 88 0 chr1 34115921 34116035 -208548318 - Tigger7 DNA MER2_type 0 2587 2464 1221 108 0 6 chr1 34116035 34116242 -208548111 - AluSg/x SINE Alu 0 326 121 186 43 0 0 chr1 34116246 34116269 -208548084 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 1079 173 0 0 chr1 34116277 34116439 -208547914 - AluSg/x SINE Alu -21 289 128 1935 168 3 13 chr1 34116449 34116622 -208547731 - AluSx SINE Alu -6 306 136 2164 135 0 22 chr1 34116622 34116941 -208547412 - AluSx SINE Alu 0 312 1 1935 168 3 13 chr1 34116941 34117076 -208547277 - AluSx SINE Alu -176 136 1 377 96 169 0 chr1 34117076 34117159 -208547194 - Tigger7 DNA MER2_type -121 2466 2370 453 173 25 0 chr1 34117212 34117293 -208547060 + AluJ/FLAM SINE Alu 2 84 -228 309 274 19 47 chr1 34117874 34117980 -208546373 + MER5B DNA MER1_type 27 129 -49 356 218 196 15 chr1 34119165 34119298 -208545055 + MIR3 SINE MIR 30 186 -22 2200 120 7 0 chr1 34119423 34119722 -208544631 + AluY SINE Alu 1 301 -10 306 73 0 0 chr1 34119740 34119781 -208544572 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 915 151 53 80 chr1 34119786 34119835 -208544518 - L1ME3A LINE L1 -16 6154 6105 2141 104 7 0 chr1 34119835 34120142 -208544211 + AluSq SINE Alu 6 314 0 915 151 53 80 chr1 34120142 34120316 -208544037 - L1ME3A LINE L1 -65 6105 5936 928 145 44 6 chr1 34120327 34120486 -208543867 - MER5A DNA MER1_type -1 188 24 1107 183 9 43 chr1 34120503 34120733 -208543620 - AluJo SINE Alu -16 296 75 2571 32 0 0 chr1 34120733 34121014 -208543339 + AluYa5 SINE Alu 1 281 -30 1249 160 45 80 chr1 34121014 34121326 -208543027 + AluJb SINE Alu 2 302 0 2147 102 33 3 chr1 34121379 34121682 -208542671 - AluSx SINE Alu 0 312 1 2209 114 3 16 chr1 34121684 34121992 -208542361 - AluSx SINE Alu -8 304 1 183 139 0 0 chr1 34122000 34122036 -208542317 + (T)n Simple_repeat Simple_repeat 1 36 0 884 144 7 55 chr1 34122060 34122206 -208542147 - AluJo SINE Alu -169 143 5 1387 160 0 5 chr1 34122289 34122501 -208541852 - AluJb SINE Alu -17 295 85 2274 77 0 74 chr1 34122502 34122826 -208541527 - AluSg SINE Alu -10 300 1 931 154 6 74 chr1 34122829 34123004 -208541349 - FRAM SINE Alu -3 163 1 2010 166 0 0 chr1 34123023 34123325 -208541028 - AluJo SINE Alu -10 302 1 1931 158 0 19 chr1 34123773 34124089 -208540264 + AluJb SINE Alu 3 312 0 451 240 6 101 chr1 34124094 34124273 -208540080 + MIR SINE MIR 72 233 -29 304 176 59 12 chr1 34124354 34124439 -208539914 + MER113 DNA MER1_type? 108 196 -325 282 240 0 40 chr1 34124638 34124713 -208539640 + AluJo/FLAM SINE Alu 49 120 -182 2145 97 0 4 chr1 34124716 34124983 -208539370 - AluSq SINE Alu -19 294 29 1274 147 6 0 chr1 34124991 34125198 -208539155 + AluSg/x SINE Alu 102 309 0 822 169 0 0 chr1 34125216 34125340 -208539013 - FLAM_C SINE Alu -9 124 1 992 194 6 6 chr1 34125354 34125529 -208538824 + FRAM SINE Alu 1 170 -6 301 263 26 0 chr1 34125529 34125605 -208538748 - L2 LINE L2 -20 3293 3216 718 273 32 28 chr1 34125963 34126179 -208538174 - MIR SINE MIR -38 224 8 811 132 0 76 chr1 34126315 34126459 -208537894 - FLAM_C SINE Alu 0 133 1 2369 93 3 6 chr1 34126514 34126827 -208537526 + AluSp SINE Alu 1 312 -1 635 143 0 0 chr1 34126831 34126922 -208537431 + AluSg/x SINE Alu 127 217 -95 1234 120 0 6 chr1 34126922 34127089 -208537264 - AluSx SINE Alu -146 166 1 574 160 11 0 chr1 34127092 34127186 -208537167 - FRAM SINE Alu -19 157 63 273 29 0 0 chr1 34127450 34127484 -208536869 + (TG)n Simple_repeat Simple_repeat 1 34 0 1636 86 14 5 chr1 34127744 34127954 -208536399 + AluSc SINE Alu 1 212 -97 1948 124 17 10 chr1 34127955 34128245 -208536108 - AluSq SINE Alu -21 292 1 297 142 30 67 chr1 34128247 34128313 -208536040 - MIR SINE MIR -62 146 89 432 37 0 0 chr1 34129385 34129439 -208534914 + (TC)n Simple_repeat Simple_repeat 1 54 0 335 303 7 42 chr1 34129554 34129696 -208534657 + MIR3 SINE MIR 60 196 -12 186 304 58 0 chr1 34131532 34131601 -208532752 - MIR SINE MIR -109 153 81 2343 93 10 0 chr1 34131608 34131908 -208532445 + AluSq SINE Alu 10 312 -1 1426 153 0 139 chr1 34131919 34132272 -208532081 + AluSx SINE Alu 1 304 -8 431 20 0 0 chr1 34132781 34132830 -208531523 + (TC)n Simple_repeat Simple_repeat 2 50 0 623 113 0 17 chr1 34135277 34135393 -208528960 - L1MA3 LINE L1 -27 6276 6168 1143 155 0 11 chr1 34135396 34135570 -208528783 + AluJo SINE Alu 126 297 -15 24 0 0 0 chr1 34135572 34135596 -208528757 + AT_rich Low_complexity Low_complexity 1 24 0 2356 92 0 0 chr1 34135668 34135971 -208528382 - AluY SINE Alu -8 303 1 2278 104 7 0 chr1 34135971 34136270 -208528083 - AluSp SINE Alu -12 301 1 1087 83 0 0 chr1 34136273 34136405 -208527948 - AluSq/x SINE Alu -180 132 1 433 315 61 20 chr1 34136744 34136941 -208527412 + L3 LINE CR1 1362 1566 -11 243 256 38 7 chr1 34136989 34137069 -208527284 + GA-rich Low_complexity Low_complexity 1 82 0 413 278 112 69 chr1 34137198 34137724 -208526629 - L1M4 LINE L1 -1206 1537 937 23 33 0 0 chr1 34137988 34138018 -208526335 + GC_rich Low_complexity Low_complexity 1 30 0 344 238 238 24 chr1 34138624 34138788 -208525565 - L2 LINE L2 -180 3092 2894 2495 66 3 3 chr1 34138794 34139095 -208525258 + AluSx SINE Alu 1 301 -11 209 358 91 11 chr1 34139095 34139239 -208525114 - L2 LINE L2 -483 2831 2667 2086 139 0 19 chr1 34139239 34139377 -208524976 + AluSx SINE Alu 1 140 -172 2492 81 0 0 chr1 34139377 34139674 -208524679 + AluSg SINE Alu 1 297 -13 2086 139 0 19 chr1 34139674 34139845 -208524508 + AluSx SINE Alu 140 304 -8 209 358 91 11 chr1 34139845 34139887 -208524466 - L2 LINE L2 -647 2667 2630 2060 104 10 24 chr1 34139903 34140191 -208524162 - AluSx SINE Alu -17 295 12 2155 82 0 47 chr1 34140266 34140583 -208523770 - AluY SINE Alu -9 302 1 469 119 0 0 chr1 34140584 34140651 -208523702 + AluSp/q SINE Alu 187 253 -60 1723 144 35 18 chr1 34141383 34141667 -208522686 - AluJb SINE Alu -21 291 3 2402 85 0 19 chr1 34141671 34141987 -208522366 - AluY SINE Alu -1 310 1 809 115 0 72 chr1 34141992 34142131 -208522222 - FLAM_C SINE Alu -5 138 10 239 270 0 32 chr1 34142181 34142244 -208522109 - L2 LINE L2 -979 2335 2275 1009 166 121 87 chr1 34142259 34142306 -208522047 - MLT1A1 LTR MaLR 0 457 413 1798 166 45 0 chr1 34142306 34142596 -208521757 + AluJb SINE Alu 2 304 -8 1009 166 121 87 chr1 34142596 34142915 -208521438 - MLT1A1 LTR MaLR -44 413 1 249 33 0 0 chr1 34142935 34142965 -208521388 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 531 168 178 0 chr1 34142965 34143066 -208521287 - FLAM_C SINE Alu -24 119 1 513 281 58 0 chr1 34143237 34143376 -208520977 + L2 LINE L2 3167 3313 0 1626 135 46 92 chr1 34143548 34143852 -208520501 - AluJb SINE Alu -22 290 1 262 344 129 34 chr1 34143939 34144387 -208519966 - L2 LINE L2 -1635 1679 1189 1682 142 13 63 chr1 34144433 34144750 -208519603 + AluJo SINE Alu 1 301 -11 2100 81 14 30 chr1 34144786 34144951 -208519402 - AluY SINE Alu -20 291 125 2608 64 0 0 chr1 34144951 34145262 -208519091 - AluY SINE Alu 0 311 1 2389 77 7 3 chr1 34145262 34145560 -208518793 - AluSp SINE Alu -14 299 1 2100 81 14 30 chr1 34145560 34145689 -208518664 - AluY SINE Alu -184 127 1 294 320 87 0 chr1 34145743 34145846 -208518507 + MIR SINE MIR 50 161 -101 2288 101 0 3 chr1 34145894 34146190 -208518163 + AluSx SINE Alu 6 300 -12 519 150 210 0 chr1 34146484 34146584 -208517769 + FLAM_C SINE Alu 11 131 -12 2506 72 0 7 chr1 34146948 34147253 -208517100 + AluY SINE Alu 1 303 -8 328 224 141 0 chr1 34147276 34147361 -208516992 + MIR SINE MIR 30 126 -82 208 355 130 49 chr1 34147389 34147474 -208516879 - L2 LINE L2 -72 3200 3123 1922 137 7 11 chr1 34147474 34147759 -208516594 + AluSx SINE Alu 27 310 -2 208 355 130 49 chr1 34147759 34147976 -208516377 - L2 LINE L2 -149 3123 2868 1212 166 0 48 chr1 34147976 34148205 -208516148 - MER58A DNA MER1_type -4 220 3 208 355 130 49 chr1 34148205 34148225 -208516128 - L2 LINE L2 -404 2868 2851 2590 68 0 0 chr1 34148338 34148648 -208515705 + AluY SINE Alu 1 310 -1 2238 116 3 0 chr1 34148661 34148954 -208515399 + AluSx SINE Alu 1 294 -18 628 143 0 31 chr1 34148992 34149090 -208515263 - FLAM_A SINE Alu -43 99 5 348 377 63 0 chr1 34149109 34149284 -208515069 - L2 LINE L2 -533 2781 2596 272 200 70 80 chr1 34149284 34149384 -208514969 + MIR SINE MIR 117 215 -47 189 289 19 0 chr1 34149994 34150046 -208514307 - L2 LINE L2 0 3313 3261 1907 167 0 3 chr1 34150063 34150357 -208513996 + AluJo SINE Alu 1 293 -19 1900 163 26 10 chr1 34150357 34150663 -208513690 + AluJb SINE Alu 1 312 0 326 205 0 26 chr1 34150769 34150847 -208513506 - Charlie8 DNA MER1_type -2243 174 99 1186 174 5 16 chr1 34150854 34151044 -208513309 + AluJb SINE Alu 104 291 -21 193 297 54 14 chr1 34151223 34151297 -208513056 - L2 LINE L2 -665 2649 2573 1471 185 0 53 chr1 34151601 34151736 -208512617 - AluJo SINE Alu -43 269 155 2020 149 23 3 chr1 34151736 34152037 -208512316 - AluSx SINE Alu -5 307 1 1471 185 0 53 chr1 34152037 34152182 -208512171 - AluJo SINE Alu -157 155 4 29 28 0 0 chr1 34152187 34152223 -208512130 + AT_rich Low_complexity Low_complexity 1 36 0 1200 260 116 8 chr1 34152238 34152269 -208512084 - L1ME3A LINE L1 -209 5961 5931 450 303 129 26 chr1 34152269 34152775 -208511578 - L1MB4 LINE L1 -253 5927 5362 1952 172 3 0 chr1 34152775 34153083 -208511270 - AluJb SINE Alu -3 309 1 450 303 129 26 chr1 34153083 34153111 -208511242 - L1MB4 LINE L1 -818 5362 5338 257 204 0 0 chr1 34153114 34153163 -208511190 - L2 LINE L2 0 3313 3265 581 216 23 29 chr1 34153163 34153334 -208511019 - L1MB4 LINE L1 -1303 4843 4674 1774 107 114 11 chr1 34153351 34153631 -208510722 - AluSg1 SINE Alu 0 309 1 866 181 0 0 chr1 34153631 34153762 -208510591 - AluJo/FRAM SINE Alu -10 302 169 2394 197 49 43 chr1 34153911 34154137 -208510216 - Tigger7 DNA MER2_type 0 2587 2364 2216 130 3 0 chr1 34154137 34154437 -208509916 + AluSq SINE Alu 1 301 -12 2394 197 49 43 chr1 34154437 34154903 -208509450 - Tigger7 DNA MER2_type -223 2364 1 180 235 0 0 chr1 34154964 34154998 -208509355 - L2 LINE L2 -229 3043 3010 2501 65 3 0 chr1 34155211 34155504 -208508849 + AluSp SINE Alu 1 294 -19 180 0 0 0 chr1 34155665 34155685 -208508668 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2462 80 0 0 chr1 34155690 34155991 -208508362 - AluY SINE Alu -10 301 1 1850 181 3 0 chr1 34155993 34156285 -208508068 - AluJb SINE Alu -19 293 1 295 316 101 89 chr1 34156290 34156537 -208507816 - L2 LINE L2 -1 3271 3022 897 198 0 45 chr1 34156543 34156578 -208507775 - FAM SINE Alu -140 45 146 2335 93 23 0 chr1 34156578 34156879 -208507474 + AluSq SINE Alu 1 308 -5 897 198 0 45 chr1 34156879 34157020 -208507333 - FAM SINE Alu -38 147 1 218 316 158 26 chr1 34157025 34157177 -208507176 - L2 LINE L2 -243 3029 2858 256 194 32 32 chr1 34157267 34157329 -208507024 + Charlie8 DNA MER1_type 149 210 -2207 318 312 45 26 chr1 34157449 34157603 -208506750 - L2 LINE L2 -470 2844 2688 831 177 0 0 chr1 34157607 34157737 -208506616 + FLAM_A SINE Alu 3 132 -1 2271 97 13 0 chr1 34157741 34158151 -208506202 + AluSq SINE Alu 1 414 0 366 317 193 15 chr1 34158151 34158353 -208506000 - L2 LINE L2 -622 2692 2455 2134 131 3 0 chr1 34158364 34158654 -208505699 + AluSx SINE Alu 6 296 -16 244 359 58 52 chr1 34158757 34159139 -208505214 - L2 LINE L2 -778 2536 2153 722 211 8 8 chr1 34159184 34159317 -208505036 - FLAM_A SINE Alu 0 133 1 513 248 8 32 chr1 34159400 34159525 -208504828 + MIR SINE MIR 36 157 -105 2164 121 7 3 chr1 34159529 34159834 -208504519 - AluSq SINE Alu -7 306 1 2226 133 0 0 chr1 34159840 34160149 -208504204 - AluSx SINE Alu -3 309 1 2052 124 7 0 chr1 34160247 34160568 -208503785 - AluSq SINE Alu 0 313 1 461 143 0 0 chr1 34160593 34160656 -208503697 - FLAM_A SINE Alu -26 116 54 315 250 62 10 chr1 34160667 34160763 -208503590 + MIR SINE MIR 162 262 0 4932 130 46 36 chr1 34160793 34161377 -208502976 + MER6 DNA MER2_type 3 580 -285 1972 142 3 7 chr1 34161377 34161666 -208502687 - AluJb SINE Alu -24 288 1 4932 130 46 36 chr1 34161666 34161719 -208502634 + MER6 DNA MER2_type 580 631 -234 2596 57 0 0 chr1 34161719 34162017 -208502336 + AluY SINE Alu 2 299 -12 4932 130 46 36 chr1 34162017 34162229 -208502124 + MER6 DNA MER2_type 631 861 -4 2371 112 0 0 chr1 34162522 34162826 -208501527 - AluSq SINE Alu -9 304 1 655 71 301 0 chr1 34162838 34162951 -208501402 - THE1B LTR MaLR -214 150 4 775 106 0 0 chr1 34162951 34163055 -208501298 - FLAM_C SINE Alu -38 105 2 198 118 0 0 chr1 34163061 34163095 -208501258 + (T)n Simple_repeat Simple_repeat 1 34 0 931 154 6 74 chr1 34163236 34163411 -208500942 + FRAM SINE Alu 1 163 -3 2340 88 0 23 chr1 34163414 34163720 -208500633 + AluSg SINE Alu 1 299 -11 2300 106 3 3 chr1 34163721 34164024 -208500329 + AluSg SINE Alu 1 303 -7 1369 118 0 44 chr1 34164026 34164230 -208500123 - AluJb SINE Alu -115 197 3 235 246 0 18 chr1 34164352 34164409 -208499944 + GA-rich Low_complexity Low_complexity 1 56 0 1923 141 3 7 chr1 34164618 34164954 -208499399 + AluSx SINE Alu 1 335 0 1012 209 5 15 chr1 34164959 34165155 -208499198 + AluJb SINE Alu 1 194 -118 1703 146 4 21 chr1 34165158 34165439 -208498914 + AluJb SINE Alu 25 300 -12 746 143 18 0 chr1 34165892 34166004 -208498349 + FLAM_A SINE Alu 13 126 -16 224 295 91 8 chr1 34166033 34166152 -208498201 + MIR3 SINE MIR 66 156 -52 886 146 0 0 chr1 34166272 34166402 -208497951 - FLAM_C SINE Alu -3 130 1 2013 110 88 0 chr1 34166429 34166701 -208497652 + AluSx SINE Alu 1 296 -16 1184 105 0 82 chr1 34167182 34167357 -208496996 + MER6 DNA MER2_type 450 605 -260 1972 142 3 7 chr1 34167357 34167646 -208496707 - AluJb SINE Alu -24 288 1 1184 105 0 82 chr1 34167646 34167689 -208496664 + MER6 DNA MER2_type 605 650 -215 2324 79 7 0 chr1 34167699 34168004 -208496349 + AluSx SINE Alu 2 294 -18 2371 58 0 7 chr1 34168014 34168308 -208496045 + AluY SINE Alu 1 292 -19 308 260 96 0 chr1 34168356 34168460 -208495893 - MIR SINE MIR -70 192 79 300 288 144 13 chr1 34169044 34169197 -208495156 + MIR3 SINE MIR 16 188 -20 2007 89 39 0 chr1 34169984 34170264 -208494089 - AluSp SINE Alu -22 291 1 1797 136 24 20 chr1 34170290 34170584 -208493769 + AluJb SINE Alu 1 295 -17 26 0 0 0 chr1 34170628 34170654 -208493699 + AT_rich Low_complexity Low_complexity 1 26 0 2278 95 0 0 chr1 34170852 34171146 -208493207 + AluSx SINE Alu 1 294 -18 732 168 0 0 chr1 34171156 34171263 -208493090 + FLAM_A SINE Alu 18 124 -18 577 186 0 0 chr1 34171480 34171582 -208492771 - FRAM SINE Alu -3 173 72 1292 176 13 70 chr1 34171631 34171943 -208492410 + AluJo SINE Alu 2 295 -17 2302 69 0 13 chr1 34171950 34172254 -208492099 + AluY SINE Alu 1 300 -11 207 311 81 0 chr1 34172513 34172587 -208491766 - MIR SINE MIR -92 116 37 2264 119 0 0 chr1 34172633 34172945 -208491408 + AluSx SINE Alu 1 312 0 2139 77 0 0 chr1 34172998 34173271 -208491082 + AluY SINE Alu 34 306 -5 2141 102 27 0 chr1 34174292 34174586 -208489767 - AluSx SINE Alu -10 302 1 681 275 22 27 chr1 34174787 34175009 -208489344 + MIR SINE MIR 12 232 -30 2289 76 3 7 chr1 34175038 34175340 -208489013 + AluSg SINE Alu 1 301 -9 227 378 31 0 chr1 34175341 34175468 -208488885 - L2 LINE L2 -486 2828 2698 1915 144 0 20 chr1 34175482 34175620 -208488733 + AluSx SINE Alu 1 140 -172 2329 81 0 3 chr1 34175620 34175918 -208488435 + AluSg SINE Alu 1 297 -13 1915 144 0 20 chr1 34175918 34176084 -208488269 + AluSx SINE Alu 140 299 -13 1997 146 0 0 chr1 34176446 34176748 -208487605 - AluSx SINE Alu -10 302 1 320 333 63 0 chr1 34176750 34176876 -208487477 + MIR SINE MIR 123 256 -6 1165 192 108 63 chr1 34177065 34177352 -208487001 + AluJo SINE Alu 1 300 -2 300 324 37 0 chr1 34177359 34177467 -208486886 - MIR SINE MIR -139 123 12 1489 147 51 48 chr1 34177743 34178035 -208486318 + AluJb SINE Alu 6 298 -14 308 270 81 67 chr1 34178435 34178794 -208485559 - L1ME4a LINE L1 -54 6067 5704 2170 82 0 10 chr1 34178794 34179085 -208485268 + AluSx SINE Alu 1 288 -24 2083 117 0 13 chr1 34179211 34179518 -208484835 - AluSx SINE Alu -9 303 1 502 209 45 142 chr1 34179532 34179800 -208484553 + MER112 DNA MER1_type 8 249 -11 1674 116 11 36 chr1 34181371 34181648 -208482705 - AluSg SINE Alu -15 295 26 193 317 175 25 chr1 34182385 34182505 -208481848 - L2 LINE L2 -17 3255 3118 1139 172 22 26 chr1 34182520 34182747 -208481606 - L1M3e LINE L1 -5010 2020 1795 183 304 106 63 chr1 34182814 34183021 -208481332 - L2 LINE L2 -213 3059 2844 213 345 142 35 chr1 34183128 34183354 -208480999 - L2 LINE L2 -6 3266 3017 32 0 0 0 chr1 34186185 34186217 -208478136 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr1 34188745 34188784 -208475569 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr1 34188800 34188829 -208475524 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 34188917 34188947 -208475406 + GC_rich Low_complexity Low_complexity 1 30 0 233 268 270 25 chr1 34190180 34190576 -208473777 - L2 LINE L2 -742 2572 2080 801 162 0 0 chr1 34190970 34191106 -208473247 - FRAM SINE Alu -1 175 40 1115 118 140 0 chr1 34191894 34192080 -208472273 + MER30 DNA MER1_type 1 212 -18 434 324 129 47 chr1 34192182 34192438 -208471915 - L1MC4a LINE L1 -1160 6648 6372 455 188 51 8 chr1 34192459 34192576 -208471777 - L1MB7 LINE L1 0 6184 6063 2305 87 3 0 chr1 34192581 34192880 -208471473 - AluY SINE Alu -11 300 1 6506 125 86 5 chr1 34192880 34193967 -208470386 - Tigger1 DNA MER2_type -1236 1182 8 448 111 28 0 chr1 34194343 34194415 -208469938 - AluSq/x SINE Alu -200 113 40 254 80 0 40 chr1 34194416 34194466 -208469887 + Alu SINE Alu 254 301 0 * 383 156 0 0 chr1 34194465 34194529 -208469824 + MLT1C LTR MaLR 112 175 -292 598 40 0 13 chr1 34194532 34194608 -208469745 - AluSg/x SINE Alu -20 290 216 760 222 27 7 chr1 34194608 34194849 -208469504 + MLT1C LTR MaLR 172 467 0 194 305 32 21 chr1 34194849 34194944 -208469409 + L2 LINE L2 3185 3280 -33 336 272 179 23 chr1 34196205 34196378 -208467975 + MIR SINE MIR 7 206 -56 826 148 40 7 chr1 34196378 34196527 -208467826 + FRAM SINE Alu 1 153 -23 1478 147 4 49 chr1 34197384 34197649 -208466704 + AluJb SINE Alu 44 296 -16 2458 57 7 0 chr1 34197720 34198019 -208466334 - AluY SINE Alu -10 301 1 319 193 193 9 chr1 34198207 34198316 -208466037 + MIR SINE MIR 21 149 -113 260 269 62 56 chr1 34198331 34198491 -208465862 - MER5A DNA MER1_type -28 161 1 900 263 148 23 chr1 34199738 34199925 -208464428 + L2 LINE L2 832 994 -2320 1786 157 3 10 chr1 34199925 34200231 -208464122 - AluJb SINE Alu -7 305 2 900 263 148 23 chr1 34200231 34200481 -208463872 + L2 LINE L2 994 1324 -1990 246 276 21 97 chr1 34200509 34200654 -208463699 + MIR SINE MIR 119 252 -10 435 315 34 14 chr1 34200725 34200871 -208463482 - MIR SINE MIR -112 150 2 2312 70 7 0 chr1 34201280 34201578 -208462775 + AluY SINE Alu 1 300 -11 186 311 0 0 chr1 34202117 34202162 -208462191 - MIR SINE MIR -82 126 82 581 236 62 14 chr1 34202240 34202384 -208461969 + MIR SINE MIR 4 154 -108 269 91 303 0 chr1 34202452 34202518 -208461835 - HsTC2 DNA Tc2 -1811 87 2 2210 88 0 16 chr1 34203258 34203563 -208460790 + AluSx SINE Alu 1 300 -12 249 316 37 44 chr1 34203699 34203835 -208460518 + MIR SINE MIR 16 150 -112 349 268 115 32 chr1 34203988 34204145 -208460208 - MER5A DNA MER1_type 0 189 20 252 343 170 18 chr1 34205439 34205885 -208458468 + L2 LINE L2 1801 2314 -1000 964 181 18 0 chr1 34206006 34206177 -208458176 - AluJo SINE Alu -17 295 122 290 316 71 25 chr1 34206189 34206385 -208457968 + L2 LINE L2 2554 2758 -556 283 323 21 94 chr1 34206693 34206774 -208457579 + L2 LINE L2 2949 3034 -238 2088 95 0 3 chr1 34206774 34207088 -208457265 + AluSx SINE Alu 3 315 0 283 323 21 94 chr1 34207088 34207333 -208457020 + L2 LINE L2 3034 3252 -20 22 0 0 0 chr1 34208578 34208600 -208455753 + GC_rich Low_complexity Low_complexity 1 22 0 307 217 11 54 chr1 34209813 34209905 -208454448 - MIR SINE MIR -55 153 66 314 314 0 0 chr1 34210636 34210773 -208453580 + (TG)n Simple_repeat Simple_repeat 1 137 0 437 157 12 12 chr1 34210936 34211019 -208453334 + AluJ/FLAM SINE Alu 2 84 -228 206 306 0 0 chr1 34211550 34211612 -208452741 - L2 LINE L2 -292 2980 2919 369 267 52 0 chr1 34211688 34211823 -208452530 + MIR3 SINE MIR 22 163 -45 1810 134 0 4 chr1 34212677 34212945 -208451408 + AluSx SINE Alu 28 294 -18 845 122 0 30 chr1 34212966 34213097 -208451256 + FLAM_C SINE Alu 1 127 -16 1661 126 56 4 chr1 34213102 34213404 -208450949 + AluSx SINE Alu 1 316 0 262 331 141 0 chr1 34213449 34213570 -208450783 - MIR SINE MIR -8 254 117 2235 108 3 0 chr1 34214372 34214679 -208449674 + AluSq SINE Alu 1 308 -5 253 343 67 8 chr1 34214775 34214909 -208449444 + MIR SINE MIR 51 192 -70 494 207 120 53 chr1 34214947 34215097 -208449256 + MIR SINE MIR 63 222 -40 2165 99 0 13 chr1 34215102 34215398 -208448955 + AluSc SINE Alu 1 294 -15 396 40 0 0 chr1 34215398 34215448 -208448905 + (CA)n Simple_repeat Simple_repeat 2 51 0 222 191 0 0 chr1 34215754 34215801 -208448552 + CT-rich Low_complexity Low_complexity 2 48 0 1781 150 7 16 chr1 34215809 34216115 -208448238 - AluJo SINE Alu 0 312 10 2400 87 0 0 chr1 34216327 34216638 -208447715 - AluSx SINE Alu -1 311 1 403 164 106 39 chr1 34216667 34216771 -208447582 - MSTD LTR MaLR -285 111 1 379 266 118 26 chr1 34216771 34216905 -208447448 + L2 LINE L2 2854 3010 -262 2428 84 0 0 chr1 34216905 34217213 -208447140 - AluSx SINE Alu -4 308 1 379 266 118 26 chr1 34217213 34217272 -208447081 + L2 LINE L2 3010 3062 -210 232 204 20 0 chr1 34217803 34217852 -208446501 - L2 LINE L2 -690 2624 2575 356 315 238 9 chr1 34217918 34218108 -208446245 - L2 LINE L2 -950 2364 2219 1037 82 0 15 chr1 34218108 34218243 -208446110 + FLAM_C SINE Alu 1 133 0 356 315 238 9 chr1 34218243 34218392 -208445961 - L2 LINE L2 -1095 2219 1947 244 211 70 0 chr1 34218728 34218785 -208445568 + L2 LINE L2 2214 2274 -1040 1999 111 40 0 chr1 34219197 34219494 -208444859 - AluSq SINE Alu -4 309 1 2145 92 7 0 chr1 34219750 34220063 -208444290 - AluSx SINE Alu 0 315 1 185 340 117 31 chr1 34220208 34220464 -208443889 + L2 LINE L2 2933 3210 -62 862 270 14 10 chr1 34220852 34221101 -208443252 + MIR SINE MIR 15 262 0 239 139 0 0 chr1 34221107 34221143 -208443210 + MIR SINE MIR 40 75 -133 236 287 32 11 chr1 34221358 34221452 -208442901 + L3b LINE CR1 1289 1384 -199 272 173 210 0 chr1 34221844 34221925 -208442428 - L2 LINE L2 -3 3269 3172 1968 36 109 0 chr1 34221927 34222174 -208442179 + AluY SINE Alu 6 279 -32 403 304 8 8 chr1 34222249 34222374 -208441979 + L2 LINE L2 3142 3266 -47 2016 134 3 3 chr1 34222418 34222723 -208441630 - AluSx SINE Alu -7 305 1 255 285 6 50 chr1 34223538 34223717 -208440636 + C-rich Low_complexity Low_complexity 3 173 0 22 0 0 0 chr1 34223893 34223915 -208440438 + GC_rich Low_complexity Low_complexity 1 22 0 1722 149 14 7 chr1 34224656 34224945 -208439408 - AluJb SINE Alu -21 291 1 1452 150 12 78 chr1 34224945 34225144 -208439209 - AluJb SINE Alu 0 312 142 225 0 0 0 chr1 34225144 34225169 -208439184 + (TG)n Simple_repeat Simple_repeat 2 26 0 1452 150 12 78 chr1 34225169 34225303 -208439050 - AluJb SINE Alu -170 142 1 248 284 84 0 chr1 34225533 34225628 -208438725 - MIR3 SINE MIR -22 186 84 1440 288 174 28 chr1 34225995 34226729 -208437624 + L2 LINE L2 1616 2523 -791 2231 91 7 0 chr1 34226729 34227026 -208437327 - AluSg SINE Alu -11 299 1 1440 288 174 28 chr1 34227026 34227248 -208437105 + L2 LINE L2 2523 2711 -603 181 320 107 10 chr1 34227324 34227427 -208436926 + L2 LINE L2 2969 3081 -191 259 335 94 21 chr1 34227796 34227987 -208436366 - L2 LINE L2 -550 2764 2560 2311 100 0 0 chr1 34228145 34228454 -208435899 - AluSg SINE Alu -1 309 1 1405 151 43 0 chr1 34228474 34228706 -208435647 - AluJb SINE Alu -64 248 7 1808 175 0 13 chr1 34228714 34229204 -208435149 - AluJb SINE Alu 0 488 3 606 278 61 14 chr1 34229566 34229778 -208434575 - MIR SINE MIR -38 224 3 410 289 0 10 chr1 34230503 34230607 -208433746 - MIR SINE MIR -112 150 48 2313 81 0 3 chr1 34231110 34231408 -208432945 - AluY SINE Alu -14 297 1 1754 140 14 17 chr1 34231411 34231703 -208432650 - AluJo SINE Alu -21 291 1 251 246 159 0 chr1 34232254 34232323 -208432030 + MIR3 SINE MIR 78 157 -51 2340 91 3 0 chr1 34232328 34232636 -208431717 - AluSg SINE Alu 0 310 2 923 128 14 0 chr1 34232827 34232968 -208431385 + AluSg/x SINE Alu 138 280 -30 703 0 11 11 chr1 34232968 34233056 -208431297 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 205 137 20 39 chr1 34233807 34233858 -208430495 + G-rich Low_complexity Low_complexity 3 52 0 24 32 0 0 chr1 34234049 34234080 -208430273 + GC_rich Low_complexity Low_complexity 1 31 0 2007 107 24 0 chr1 34236584 34236874 -208427479 - AluSx SINE Alu -14 298 2 203 138 0 0 chr1 34237351 34237380 -208426973 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 34237410 34237435 -208426918 + AT_rich Low_complexity Low_complexity 1 25 0 225 293 40 0 chr1 34239726 34239801 -208424552 + MIR SINE MIR 36 113 -149 383 244 109 45 chr1 34239898 34240054 -208424299 - MIR SINE MIR -4 258 93 915 109 0 51 chr1 34240170 34240308 -208424045 - FLAM_C SINE Alu -1 132 2 194 300 17 33 chr1 34240310 34240370 -208423983 + MER5B DNA MER1_type 115 173 -5 425 335 68 29 chr1 34240812 34240838 -208423515 + L1ME4a LINE L1 5606 5630 -491 2129 101 10 3 chr1 34240838 34241136 -208423217 - AluSx SINE Alu -12 300 1 425 335 68 29 chr1 34241136 34241390 -208422963 + L1ME4a LINE L1 5630 5897 -224 1087 163 5 15 chr1 34241464 34241660 -208422693 + AluJo SINE Alu 104 297 -15 653 274 46 33 chr1 34241688 34241929 -208422424 + L2 LINE L2 2853 3096 -217 1151 107 0 24 chr1 34241932 34242101 -208422252 - AluSg/x SINE Alu -14 296 132 2251 105 0 6 chr1 34242101 34242415 -208421938 - AluSx SINE Alu 0 312 1 282 288 82 35 chr1 34242423 34242593 -208421760 + L2 LINE L2 3114 3291 -22 795 215 169 20 chr1 34242615 34242660 -208421693 + MER58A DNA MER1_type 1 38 -2382 2281 84 0 10 chr1 34242660 34242971 -208421382 + AluY SINE Alu 2 309 -2 795 215 169 20 chr1 34242971 34243120 -208421233 + MER58A DNA MER1_type 38 224 0 291 313 97 14 chr1 34243272 34243416 -208420937 + L1ME4a LINE L1 5900 6055 -66 2509 56 7 0 chr1 34243444 34243749 -208420604 - AluY SINE Alu -4 307 1 319 193 193 9 chr1 34243937 34244046 -208420307 + MIR SINE MIR 21 149 -113 260 269 62 56 chr1 34244061 34244221 -208420132 - MER5A DNA MER1_type -28 161 1 900 263 148 23 chr1 34245468 34245655 -208418698 + L2 LINE L2 832 994 -2320 1786 157 3 10 chr1 34245655 34245961 -208418392 - AluJb SINE Alu -7 305 2 900 263 148 23 chr1 34245961 34246211 -208418142 + L2 LINE L2 994 1324 -1990 246 276 21 97 chr1 34246239 34246384 -208417969 + MIR SINE MIR 119 252 -10 435 315 34 14 chr1 34246455 34246601 -208417752 - MIR SINE MIR -112 150 2 2312 70 7 0 chr1 34247010 34247308 -208417045 + AluY SINE Alu 1 300 -11 186 311 0 0 chr1 34247847 34247892 -208416461 - MIR SINE MIR -82 126 82 581 236 62 14 chr1 34247970 34248114 -208416239 + MIR SINE MIR 4 154 -108 269 91 303 0 chr1 34248182 34248248 -208416105 - HsTC2 DNA Tc2 -1811 87 2 2210 88 0 16 chr1 34248988 34249293 -208415060 + AluSx SINE Alu 1 300 -12 249 316 37 44 chr1 34249429 34249565 -208414788 + MIR SINE MIR 16 150 -112 349 268 115 32 chr1 34249718 34249875 -208414478 - MER5A DNA MER1_type 0 189 20 252 343 170 18 chr1 34251170 34251616 -208412737 + L2 LINE L2 1801 2314 -1000 964 181 18 0 chr1 34251737 34251908 -208412445 - AluJo SINE Alu -17 295 122 290 316 71 25 chr1 34251920 34252116 -208412237 + L2 LINE L2 2554 2758 -556 271 319 21 97 chr1 34252424 34252505 -208411848 + L2 LINE L2 2949 3035 -237 2088 95 0 3 chr1 34252505 34252819 -208411534 + AluSx SINE Alu 3 315 0 271 319 21 97 chr1 34252819 34253065 -208411288 + L2 LINE L2 3035 3252 -20 2290 95 0 0 chr1 34254086 34254390 -208409963 + AluSx SINE Alu 1 304 -8 1275 161 37 0 chr1 34254415 34254633 -208409720 + AluJb SINE Alu 85 310 -2 1754 160 6 28 chr1 34254720 34255039 -208409314 + AluJo SINE Alu 1 312 0 270 301 99 38 chr1 34255122 34255304 -208409049 + L1ME4a LINE L1 5634 5804 -317 1617 162 19 42 chr1 34255304 34255613 -208408740 + AluJb SINE Alu 1 302 -10 270 301 99 38 chr1 34255613 34255875 -208408478 + L1ME4a LINE L1 5804 6105 -16 596 274 142 9 chr1 34256473 34256685 -208407668 + MIR SINE MIR 9 248 -14 212 261 15 15 chr1 34256940 34257005 -208407348 + L2 LINE L2 3248 3312 -1 818 141 101 7 chr1 34257435 34257584 -208406769 + L1PA16 LINE L1 6003 6165 -1 1929 147 0 0 chr1 34257586 34257878 -208406475 + AluJb SINE Alu 1 292 -20 230 308 194 4 chr1 34257903 34258130 -208406223 + L1ME4a LINE L1 5538 5807 -314 2330 66 3 3 chr1 34258179 34258482 -208405871 + AluY SINE Alu 1 303 -8 240 252 16 79 chr1 34258520 34258647 -208405706 + L1ME4a LINE L1 5965 6083 -38 332 260 96 10 chr1 34259256 34259360 -208404993 + MIR3 SINE MIR 58 170 -38 2383 59 3 0 chr1 34259482 34259772 -208404581 - AluSp SINE Alu -12 301 11 27 29 0 0 chr1 34260494 34260528 -208403825 + AT_rich Low_complexity Low_complexity 1 34 0 468 323 90 73 chr1 34260562 34261084 -208403269 + L2 LINE L2 2546 3093 -179 2162 70 0 0 chr1 34261084 34261357 -208402996 - AluY SINE Alu 0 311 39 468 323 90 73 chr1 34261357 34261537 -208402816 + L2 LINE L2 3093 3268 -4 1830 152 27 3 chr1 34261812 34261926 -208402427 + AluJb SINE Alu 1 111 -201 252 0 0 0 chr1 34261926 34261954 -208402399 + (CA)n Simple_repeat Simple_repeat 1 28 0 1830 152 27 3 chr1 34261954 34262135 -208402218 + AluJb SINE Alu 111 303 -9 852 358 100 22 chr1 34262217 34262770 -208401583 - L2 LINE L2 -459 2855 2346 1797 186 0 0 chr1 34262770 34263066 -208401287 + AluJo SINE Alu 1 296 -16 852 358 100 22 chr1 34263066 34263463 -208400890 - L2 LINE L2 -968 2346 1831 848 195 24 0 chr1 34264021 34264190 -208400163 - MIR SINE MIR 0 262 90 2167 108 10 0 chr1 34264191 34264497 -208399856 + AluSx SINE Alu 1 309 -3 2087 125 0 0 chr1 34264925 34265220 -208399133 + AluSx SINE Alu 3 297 -15 377 277 67 46 chr1 34265664 34265859 -208398494 + L2 LINE L2 3109 3307 -6 935 222 83 152 chr1 34267266 34267582 -208396771 + L2 LINE L2 1531 1867 -1447 231 59 39 20 chr1 34267582 34267633 -208396720 + (TTTTA)n Simple_repeat Simple_repeat 3 54 0 935 222 83 152 chr1 34267633 34267750 -208396603 + L2 LINE L2 1867 1991 -1323 2156 116 0 0 chr1 34267750 34268053 -208396300 - AluSx SINE Alu -9 303 1 935 222 83 152 chr1 34268053 34268340 -208396013 + L2 LINE L2 1991 2202 -1112 2099 123 3 0 chr1 34268341 34268643 -208395710 - AluSx SINE Alu -9 303 1 1169 136 9 47 chr1 34268645 34268685 -208395668 - AluJo SINE Alu -15 297 257 2250 121 45 28 chr1 34268685 34269041 -208395312 - THE1B LTR MaLR -2 362 1 1169 136 9 47 chr1 34269041 34269213 -208395140 - AluJo SINE Alu -55 257 93 714 150 26 0 chr1 34269223 34269336 -208395017 - FLAM_C SINE Alu -17 126 11 1769 257 67 10 chr1 34269339 34269834 -208394519 + L2 LINE L2 2192 2714 -600 759 126 89 7 chr1 34269835 34269970 -208394383 + L1M3 LINE L1 5542 5687 -496 1070 126 0 0 chr1 34269977 34270151 -208394202 - AluSp SINE Alu 0 307 134 1963 130 14 3 chr1 34270151 34270444 -208393909 - AluSq SINE Alu -17 296 1 449 209 23 0 chr1 34270458 34270544 -208393809 + AluJb SINE Alu 210 297 -15 249 159 0 0 chr1 34270545 34270589 -208393764 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 1353 264 107 18 chr1 34270589 34271138 -208393215 + L2 LINE L2 2705 3312 -1 258 258 0 15 chr1 34271426 34271492 -208392861 - MIR SINE MIR -78 184 120 718 170 36 0 chr1 34271492 34271604 -208392749 + FLAM_C SINE Alu 3 118 -25 2115 95 7 0 chr1 34271619 34271903 -208392450 - AluSx SINE Alu -26 286 1 414 278 0 35 chr1 34271905 34272020 -208392333 - MIR SINE MIR -111 151 41 1758 166 3 7 chr1 34272311 34272613 -208391740 - AluJo SINE Alu -11 301 1 224 253 189 0 chr1 34272613 34272708 -208391645 + MIR SINE MIR 122 234 -28 239 340 31 41 chr1 34272714 34272811 -208391542 + L2 LINE L2 3172 3267 -5 239 247 247 31 chr1 34272821 34272918 -208391435 + MIR SINE MIR 20 137 -71 255 239 0 0 chr1 34273382 34273428 -208390925 - MER45 DNA AcHobo -1 1580 1535 1117 140 0 0 chr1 34273525 34273704 -208390649 + AluJb SINE Alu 134 312 0 384 143 26 0 chr1 34273706 34273783 -208390570 - MER63B DNA MER1_type -57 378 300 861 220 0 0 chr1 34273784 34273961 -208390392 + FRAM SINE Alu 1 176 0 288 197 0 0 chr1 34273961 34274027 -208390326 - MER63B DNA MER1_type -147 288 223 953 212 30 35 chr1 34275325 34275394 -208388959 - MER63B DNA MER1_type -827 235 167 2212 90 0 7 chr1 34275394 34275693 -208388660 - AluSq SINE Alu -16 297 1 953 212 30 35 chr1 34275693 34275854 -208388499 - MER63B DNA MER1_type -895 167 6 27 49 0 0 chr1 34276125 34276166 -208388187 + AT_rich Low_complexity Low_complexity 1 41 0 1012 70 0 0 chr1 34276166 34276294 -208388059 - AluSp/q SINE Alu -26 287 160 1715 149 11 0 chr1 34276346 34276621 -208387732 - AluJb SINE Alu -26 286 9 3078 280 82 52 chr1 34277216 34277521 -208386832 - ERVL LTR ERVL -422 5342 5047 2634 13 0 3 chr1 34277521 34277821 -208386532 + AluYa5 SINE Alu 1 299 -12 3078 280 82 52 chr1 34277821 34278051 -208386302 - ERVL LTR ERVL -717 5047 4825 1620 142 49 17 chr1 34278051 34278339 -208386014 + AluJb SINE Alu 1 297 -15 3078 280 82 52 chr1 34278339 34279336 -208385017 - ERVL LTR ERVL -939 4825 3764 1778 149 3 7 chr1 34279515 34279810 -208384543 - AluSx SINE Alu -14 298 5 566 249 203 0 chr1 34280095 34280292 -208384061 - ERVL LTR ERVL -2164 3600 3364 366 287 59 59 chr1 34280445 34280588 -208383765 - ERVL LTR ERVL -2346 3308 3163 2186 97 3 3 chr1 34280588 34280886 -208383467 - AluSp SINE Alu -15 298 1 366 287 59 59 chr1 34280886 34280996 -208383357 - ERVL LTR ERVL -2490 3164 3055 811 165 0 0 chr1 34281022 34281149 -208383204 + AluSq/x SINE Alu 1 127 -185 26 0 0 0 chr1 34281153 34281179 -208383174 + AT_rich Low_complexity Low_complexity 1 26 0 746 325 113 3 chr1 34281204 34281487 -208382866 - ERVL LTR ERVL -2725 3039 2726 237 158 18 35 chr1 34281548 34281605 -208382748 + MLT1J LTR MaLR 100 155 -356 * 303 287 11 23 chr1 34281558 34281645 -208382708 + LTR67 LTR ERVL 114 199 -358 772 142 149 27 chr1 34281840 34281988 -208382365 - AluSg/x SINE Alu -12 298 133 2126 126 0 3 chr1 34282007 34282316 -208382037 - AluSx SINE Alu -4 308 1 726 301 88 0 chr1 34282346 34282595 -208381758 - ERVL LTR ERVL -3172 2592 2322 30 0 0 0 chr1 34282595 34282625 -208381728 + AT_rich Low_complexity Low_complexity 1 30 0 1956 150 0 7 chr1 34282706 34283006 -208381347 - AluSx SINE Alu -14 298 1 1867 142 20 0 chr1 34283006 34283301 -208381052 - AluSx SINE Alu -10 302 1 305 302 52 10 chr1 34283639 34283735 -208380618 + LTR33A LTR ERVL 59 158 -365 301 243 117 29 chr1 34283979 34284082 -208380271 - ERVL LTR ERVL -3692 2072 1961 1986 134 0 3 chr1 34284319 34284618 -208379735 + AluSx SINE Alu 1 298 -14 1934 141 0 14 chr1 34284633 34284930 -208379423 + AluJb SINE Alu 5 297 -15 3525 131 52 49 chr1 34285059 34285669 -208378684 + LTR9 LTR ERV1 1 612 0 711 148 19 0 chr1 34285672 34285780 -208378573 + HUERS-P3 LTR ERV1 4 113 -8806 29811 156 36 36 chr1 34285782 34287649 -208376704 + HUERS-P3 LTR ERV1 266 2133 -5421 2125 125 0 3 chr1 34287649 34287961 -208376392 - AluSq SINE Alu -2 311 1 29811 156 36 36 chr1 34287961 34288595 -208375758 + HUERS-P3 LTR ERV1 2133 2766 -4788 2315 71 0 29 chr1 34288595 34288903 -208375450 - AluY SINE Alu -12 299 1 29811 156 36 36 chr1 34288903 34291364 -208372989 + HUERS-P3 LTR ERV1 2766 5228 -2326 2350 82 0 0 chr1 34291364 34291668 -208372685 - AluY SINE Alu -6 305 2 2196 101 0 7 chr1 34291670 34291977 -208372376 - AluSp SINE Alu -8 305 1 29811 156 36 36 chr1 34291977 34293806 -208370547 + HUERS-P3 LTR ERV1 5229 7084 -470 391 125 18 0 chr1 34294027 34294083 -208370270 + HUERS-P3 LTR ERV1 8059 8115 -804 2421 61 3 0 chr1 34294514 34294811 -208369542 + AluSp SINE Alu 2 299 -14 2024 134 0 0 chr1 34295041 34295346 -208369007 - AluSx SINE Alu -7 305 1 1805 178 118 67 chr1 34295823 34296240 -208368113 - LTR21B LTR ERV1 0 438 1 2028 87 13 55 chr1 34297784 34298095 -208366258 - AluSg SINE Alu -12 298 1 324 0 0 0 chr1 34299457 34299493 -208364860 + (TGG)n Simple_repeat Simple_repeat 3 38 0 254 304 116 0 chr1 34300161 34300273 -208364080 + MIR SINE MIR 137 261 -1 5354 128 52 0 chr1 34300284 34301066 -208363287 + HUERS-P3 LTR ERV1 8096 8918 -1 3649 146 14 56 chr1 34301066 34301193 -208363160 + LTR9 LTR ERV1 1 132 -480 2162 105 0 0 chr1 34301193 34301487 -208362866 - AluSx SINE Alu -18 294 1 3649 146 14 56 chr1 34301487 34301998 -208362355 + LTR9 LTR ERV1 132 612 0 180 0 0 0 chr1 34302755 34302775 -208361578 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 2219 88 0 7 chr1 34302777 34303072 -208361281 - AluY SINE Alu -18 293 1 888 187 0 0 chr1 34303177 34303327 -208361026 + AluJo SINE Alu 1 150 -162 315 301 12 0 chr1 34303438 34303521 -208360832 + L1M4 LINE L1 3674 3757 -2389 1740 166 7 0 chr1 34304425 34304715 -208359638 - AluJb SINE Alu -20 292 1 2056 156 0 3 chr1 34304742 34305062 -208359291 + 7SLRNA srpRNA srpRNA 2 320 0 3900 127 79 22 chr1 34305484 34306384 -208357969 + MER11A LTR ERVK 152 1266 0 2617 93 31 6 chr1 34306396 34306751 -208357602 - THE1B LTR MaLR 0 364 1 1903 144 0 43 chr1 34307041 34307367 -208356986 - AluSx SINE Alu 0 312 1 1704 137 16 42 chr1 34307738 34307910 -208356443 - AluSx SINE Alu -14 298 136 1920 127 13 7 chr1 34307910 34308217 -208356136 - AluSx SINE Alu -3 309 1 1704 137 16 42 chr1 34308217 34308350 -208356003 - AluSx SINE Alu -176 136 1 438 272 27 41 chr1 34309679 34309826 -208354527 + L2 LINE L2 2709 2853 -461 783 182 0 0 chr1 34309827 34309948 -208354405 - MER45A DNA AcHobo -2 176 56 1137 206 8 35 chr1 34310253 34310370 -208353983 - L1MB5 LINE L1 0 6174 6055 1810 170 0 7 chr1 34310370 34310676 -208353677 - AluSx SINE Alu -8 304 1 1137 206 8 35 chr1 34310676 34310815 -208353538 - L1MB5 LINE L1 -119 6055 5925 1180 167 5 0 chr1 34310816 34311014 -208353339 + MLT2B1 LTR ERVL 1 199 -321 2911 78 90 5 chr1 34311036 34311449 -208352904 + LTR7 LTR ERV1 1 448 -2 9960 90 33 18 chr1 34311451 34312898 -208351455 + HERVH LTR ERV1 1 1469 -6244 2090 97 3 32 chr1 34313063 34313371 -208350982 - AluSx SINE Alu -13 299 1 445 315 150 5 chr1 34313423 34313623 -208350730 + MIR SINE MIR 3 231 -31 1529 136 62 0 chr1 34313717 34313960 -208350393 - AluSx SINE Alu -26 286 29 2414 62 0 0 chr1 34314035 34314342 -208350011 + AluY SINE Alu 1 307 -4 300 158 0 0 chr1 34314842 34314899 -208349454 + (CGG)n Simple_repeat Simple_repeat 2 58 0 702 212 0 0 chr1 34315501 34315731 -208348622 + (CAT)n Simple_repeat Simple_repeat 1 230 0 712 194 6 6 chr1 34315760 34315940 -208348413 + (CAT)n Simple_repeat Simple_repeat 1 180 0 209 262 0 0 chr1 34315961 34316003 -208348350 - L2 LINE L2 -11 3261 3220 516 228 23 42 chr1 34316057 34316219 -208348134 + MIR SINE MIR 35 192 -63 252 0 0 0 chr1 34316422 34316450 -208347903 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2009 109 0 11 chr1 34316450 34316733 -208347620 - AluSx SINE Alu -32 280 1 1190 115 0 0 chr1 34316976 34317150 -208347203 + AluSg/x SINE Alu 137 310 -2 1782 166 0 26 chr1 34317329 34317637 -208346716 - AluJo SINE Alu -12 300 1 2155 112 0 0 chr1 34317663 34317967 -208346386 - AluSx SINE Alu -8 304 1 1636 143 21 96 chr1 34318041 34318376 -208345977 + AluJb SINE Alu 1 310 -2 193 359 26 0 chr1 34318574 34318652 -208345701 - MIR SINE MIR -75 133 54 2179 93 6 13 chr1 34319115 34319428 -208344925 + AluSx SINE Alu 1 311 -1 2056 133 0 0 chr1 34319632 34319933 -208344420 - AluSx SINE Alu -11 301 1 946 146 0 0 chr1 34319936 34320114 -208344239 - AluJb SINE Alu 0 315 138 358 318 48 37 chr1 34320264 34320453 -208343900 + L2 LINE L2 2553 2743 -571 1197 98 0 0 chr1 34320458 34320622 -208343731 + AluSg/x SINE Alu 137 300 -12 730 137 0 24 chr1 34320656 34320780 -208343573 + L2 LINE L2 3193 3313 0 338 368 16 28 chr1 34320817 34320999 -208343354 + L2 LINE L2 2883 3062 -210 1557 147 13 76 chr1 34321434 34321590 -208342763 + AluJb SINE Alu 1 129 -183 2053 118 3 3 chr1 34321590 34321886 -208342467 + AluSq SINE Alu 1 296 -17 1557 147 13 76 chr1 34321886 34322043 -208342310 + AluJb SINE Alu 129 294 -18 2176 112 0 0 chr1 34322045 34322339 -208342014 + AluSx SINE Alu 1 294 -18 941 237 50 0 chr1 34322739 34322937 -208341416 - MIR SINE MIR -4 258 51 252 0 0 0 chr1 34322982 34323010 -208341343 + (ATATG)n Simple_repeat Simple_repeat 5 32 0 2161 107 7 0 chr1 34323058 34323366 -208340987 + AluSx SINE Alu 1 310 -2 305 183 0 113 chr1 34323388 34323459 -208340894 - MER2 DNA MER2_type -1 344 282 546 217 0 9 chr1 34323461 34323567 -208340786 - MER8 DNA MER2_type -133 106 2 1171 130 142 170 chr1 34323904 34324305 -208340048 - MLT1B LTR MaLR 0 390 1 273 211 110 46 chr1 34324355 34324464 -208339889 - MER112 DNA MER1_type -139 121 6 23 0 0 0 chr1 34325436 34325459 -208338894 + AT_rich Low_complexity Low_complexity 1 23 0 2184 83 83 0 chr1 34325460 34325774 -208338579 - L1PA14 LINE L1 -17 6144 5805 759 175 65 26 chr1 34325794 34325948 -208338405 - AluJb SINE Alu -7 305 146 1352 122 0 0 chr1 34326048 34326237 -208338116 - AluSc SINE Alu -120 189 1 589 215 8 0 chr1 34326237 34326367 -208337986 - L1M LINE L1 -751 5423 5293 1719 177 198 32 chr1 34326380 34326778 -208337575 - LTR10A LTR ERV1 -61 548 59 2253 76 3 3 chr1 34326778 34327079 -208337274 + AluY SINE Alu 1 301 -10 1719 177 198 32 chr1 34327079 34327150 -208337203 - LTR10A LTR ERV1 -550 59 1 11793 159 13 19 chr1 34327153 34330310 -208334043 - Harlequin LTR ERV1 -4 6645 1807 295 169 197 14 chr1 34330313 34330384 -208333969 + LTR8 LTR ERV1 174 257 -434 3638 74 0 35 chr1 34330384 34331016 -208333337 - Harlequin LTR ERV1 -5178 1718 1063 1297 88 0 11 chr1 34331023 34331204 -208333149 - AluY SINE Alu 0 311 133 1880 97 42 10 chr1 34331204 34331493 -208332860 - AluSc SINE Alu -11 298 1 1715 142 44 9 chr1 34331493 34331832 -208332521 - Harlequin LTR ERV1 -5884 1012 716 944 219 73 18 chr1 34332206 34332262 -208332091 - Harlequin LTR ERV1 -6360 289 238 6264 128 30 21 chr1 34332262 34333260 -208331093 + LTR13 LTR ERVK 1 1007 0 944 219 73 18 chr1 34333260 34333477 -208330876 - Harlequin LTR ERV1 -6411 238 1 1896 182 153 35 chr1 34333486 34333976 -208330377 - LTR10A LTR ERV1 -61 548 1 1396 164 0 0 chr1 34333996 34334234 -208330119 - AluJo SINE Alu -7 305 68 2235 101 16 0 chr1 34334234 34334542 -208329811 + AluSq SINE Alu 1 313 0 438 155 14 0 chr1 34334666 34334737 -208329616 - AluJo SINE Alu -239 73 2 858 150 89 77 chr1 34334738 34334984 -208329369 - L1M4 LINE L1 -858 5288 5040 201 213 0 0 chr1 34334994 34335041 -208329312 + CT-rich Low_complexity Low_complexity 2 48 0 714 163 0 23 chr1 34335051 34335180 -208329173 - FLAM_C SINE Alu 0 143 18 244 184 0 20 chr1 34335187 34335236 -208329117 - L1MC/D LINE L1 -634 5710 5663 991 98 14 0 chr1 34335246 34335389 -208328964 - AluSg/x SINE Alu -33 279 135 1765 162 3 0 chr1 34335392 34335703 -208328650 - AluSx SINE Alu 0 312 1 572 147 0 11 chr1 34335703 34335798 -208328555 - L1MC/D LINE L1 -514 5670 5577 538 185 37 0 chr1 34335801 34335909 -208328444 - LTR47A LTR ERVL -283 169 58 1288 183 35 7 chr1 34335923 34336212 -208328141 - L1M4 LINE L1 -1092 5054 4758 261 0 0 0 chr1 34336229 34336258 -208328095 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1887 95 29 4 chr1 34336260 34336534 -208327819 - AluSq SINE Alu -29 284 4 2280 55 7 3 chr1 34336753 34337044 -208327309 + AluY SINE Alu 4 295 -16 691 212 8 0 chr1 34337134 34337266 -208327087 - FLAM_A SINE Alu 0 133 1 751 240 221 44 chr1 34337413 34337468 -208326885 - LTR50 LTR ERVL -2 793 749 2121 118 0 0 chr1 34337468 34337774 -208326579 - AluSx SINE Alu -6 306 1 751 240 221 44 chr1 34337774 34337804 -208326549 - LTR50 LTR ERVL -46 749 726 2157 84 0 27 chr1 34337804 34338103 -208326250 - AluY SINE Alu -20 291 1 751 240 221 44 chr1 34338103 34338262 -208326091 - LTR50 LTR ERVL -69 726 596 706 189 25 77 chr1 34338262 34338325 -208326028 - MER53 DNA DNA -3 186 121 1970 129 26 0 chr1 34338325 34338627 -208325726 - AluSq SINE Alu -3 310 1 706 189 25 77 chr1 34338627 34338759 -208325594 - MER53 DNA DNA -68 121 1 751 240 221 44 chr1 34338759 34339105 -208325248 - LTR50 LTR ERVL -199 596 1 1603 176 10 0 chr1 34339241 34339537 -208324816 + AluJo SINE Alu 1 299 -13 2363 68 0 0 chr1 34339562 34339856 -208324497 - AluY SINE Alu -17 294 1 1955 163 11 68 chr1 34340203 34340572 -208323781 + MER66B LTR ERV1 1 348 -138 489 207 11 0 chr1 34340672 34340759 -208323594 - AluJ/FLAM SINE Alu -223 89 2 741 216 162 19 chr1 34340797 34340873 -208323480 - MLT2B1 LTR ERVL -2 518 454 3923 160 64 13 chr1 34340873 34341565 -208322788 + LTR8A LTR ERV1 1 727 0 741 216 162 19 chr1 34341565 34341722 -208322631 - MLT2B1 LTR ERVL -66 454 242 2311 80 3 0 chr1 34341722 34342022 -208322331 + AluSp SINE Alu 3 303 -10 741 216 162 19 chr1 34342022 34342046 -208322307 - MLT2B1 LTR ERVL -278 242 223 1027 196 88 0 chr1 34342071 34342275 -208322078 + AluJo SINE Alu 10 231 -81 3104 90 8 153 chr1 34342277 34342993 -208321360 - MER4B LTR ERV1 0 779 1 416 158 0 49 chr1 34342993 34343075 -208321278 + AluJo SINE Alu 230 307 -5 2791 75 122 5 chr1 34343085 34343486 -208320867 - LTR7 LTR ERV1 -2 448 1 2375 98 53 13 chr1 34343486 34343863 -208320490 - HERVH LTR ERV1 0 7713 7322 1513 101 18 14 chr1 34343861 34344080 -208320273 - HERVH LTR ERV1 -1894 5819 5600 * 4510 134 1 1 chr1 34344081 34344743 -208319610 - HERVH LTR ERV1 -2564 5149 4488 3443 109 4 6 chr1 34344745 34345248 -208319105 - HERVH LTR ERV1 -3720 3993 3492 930 128 20 0 chr1 34345238 34345386 -208318967 - HERVH LTR ERV1 -4423 3290 3140 * 2396 144 9 16 chr1 34345380 34345810 -208318543 - HERVH LTR ERV1 -4726 2987 2561 599 130 11 11 chr1 34345811 34345903 -208318450 - AluSg/x SINE Alu -144 166 75 616 296 61 44 chr1 34345961 34346255 -208318098 + MLT1K LTR MaLR 27 325 -263 1705 150 0 46 chr1 34346401 34346727 -208317626 - AluSx SINE Alu -1 311 1 232 227 0 0 chr1 34346731 34346775 -208317578 + MLT1L LTR MaLR 569 612 -3 262 359 45 51 chr1 34346783 34346939 -208317414 + L2 LINE L2 3098 3252 -20 2225 80 0 35 chr1 34347004 34347317 -208317036 + AluSx SINE Alu 1 302 -10 1441 148 4 49 chr1 34347390 34347654 -208316699 - AluJb SINE Alu -17 295 44 861 134 40 20 chr1 34348511 34348660 -208315693 - FRAM SINE Alu -25 151 1 376 272 179 23 chr1 34348660 34348833 -208315520 - MIR SINE MIR -56 206 7 1147 163 43 8 chr1 34350248 34350286 -208314067 + L1M4 LINE L1 5165 5200 -978 2279 98 0 0 chr1 34350286 34350591 -208313762 + AluSc SINE Alu 1 305 -4 1147 163 43 8 chr1 34350591 34350857 -208313496 + L1M4 LINE L1 5200 5474 -704 1738 127 0 98 chr1 34351004 34351350 -208313003 + AluSx SINE Alu 1 312 0 1213 73 0 12 chr1 34351441 34351605 -208312748 + L1PA5 LINE L1 5993 6154 0 764 163 0 59 chr1 34351679 34351814 -208312539 + FLAM_A SINE Alu 1 127 -6 1717 160 3 14 chr1 34351828 34352122 -208312231 + AluJo SINE Alu 11 301 -11 405 286 90 51 chr1 34352157 34352335 -208312018 - L2 LINE L2 -50 3222 3038 2994 98 26 5 chr1 34352441 34352858 -208311495 + MSTA LTR MaLR 3 428 0 2669 180 4 32 chr1 34354178 34354677 -208309676 - MER66B LTR ERV1 0 486 2 495 268 8 0 chr1 34355147 34355270 -208309083 + MER5C DNA MER1_type 1 124 -200 180 222 206 32 chr1 34355384 34355447 -208308906 + MER5C DNA MER1_type 248 321 -3 1837 159 13 0 chr1 34355455 34355763 -208308590 + AluSx SINE Alu 1 312 0 2183 77 11 0 chr1 34355851 34356137 -208308216 + AluSp SINE Alu 1 289 -24 841 136 8 0 chr1 34356449 34356574 -208307779 + MER20 DNA MER1_type 94 219 0 2162 95 0 3 chr1 34356662 34356992 -208307361 - AluSx SINE Alu 0 329 1 2493 65 0 0 chr1 34358475 34358784 -208305569 - AluY SINE Alu -2 309 1 2213 80 27 0 chr1 34360192 34360491 -208303862 - AluSq SINE Alu -6 307 1 261 277 181 0 chr1 34360602 34360696 -208303657 - L2 LINE L2 -6 3307 3197 2045 89 14 7 chr1 34361039 34361332 -208303021 - AluSc SINE Alu -10 299 5 1560 91 228 0 chr1 34361374 34361615 -208302738 + AluSx SINE Alu 1 296 -6 22 56 0 0 chr1 34361634 34361670 -208302683 + AT_rich Low_complexity Low_complexity 1 36 0 1977 110 65 3 chr1 34361816 34362108 -208302245 + AluSq SINE Alu 2 311 -2 273 211 53 13 chr1 34362127 34362203 -208302150 - MIR3 SINE MIR 0 208 130 26 50 0 0 chr1 34362622 34362662 -208301691 + AT_rich Low_complexity Low_complexity 1 40 0 2012 136 10 0 chr1 34362691 34362992 -208301361 - AluSx SINE Alu -8 304 1 1044 158 0 0 chr1 34363629 34363787 -208300566 + FRAM SINE Alu 1 155 -21 24 0 0 0 chr1 34364647 34364671 -208299682 + AT_rich Low_complexity Low_complexity 1 24 0 822 154 99 33 chr1 34364958 34365140 -208299213 + MER58A DNA MER1_type 27 220 -4 22 0 0 0 chr1 34365460 34365482 -208298871 + AT_rich Low_complexity Low_complexity 1 22 0 307 222 0 0 chr1 34365776 34365830 -208298523 + MER5A DNA MER1_type 1 54 -135 195 107 0 0 chr1 34365830 34365858 -208298495 + MER5A DNA MER1_type 156 183 -6 1854 145 3 3 chr1 34365860 34366157 -208298196 + AluJb SINE Alu 1 297 -15 2211 100 0 7 chr1 34366157 34366466 -208297887 + AluSx SINE Alu 1 307 -5 2045 137 0 0 chr1 34366479 34366786 -208297567 - AluSx SINE Alu -5 307 1 1908 163 51 108 chr1 34367382 34367662 -208296691 + L1MB5 LINE L1 5660 5896 -278 2326 62 7 3 chr1 34367662 34367966 -208296387 + AluY SINE Alu 1 305 -6 1908 163 51 108 chr1 34367966 34368230 -208296123 + L1MB5 LINE L1 5896 6173 -1 22 0 0 0 chr1 34368384 34368406 -208295947 + GC_rich Low_complexity Low_complexity 1 22 0 25 95 0 0 chr1 34368554 34368628 -208295725 + GC_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr1 34368676 34368698 -208295655 + GC_rich Low_complexity Low_complexity 1 22 0 233 109 22 0 chr1 34368726 34368772 -208295581 + (CGG)n Simple_repeat Simple_repeat 2 48 0 959 230 55 48 chr1 34368859 34369168 -208295185 - L1MC4a LINE L1 -339 7469 7159 872 169 0 0 chr1 34369177 34369326 -208295027 - AluJb SINE Alu -19 293 146 379 194 0 4 chr1 34369314 34369406 -208294947 - AluS SINE Alu -236 65 1 * 434 169 113 40 chr1 34369420 34369544 -208294809 - FLAM_A SINE Alu 0 133 1 1620 206 30 24 chr1 34369547 34369570 -208294783 - L1MC4 LINE L1 -861 7032 7011 2151 117 0 0 chr1 34369570 34369878 -208294475 - AluSx SINE Alu -4 308 1 1620 206 30 24 chr1 34369878 34370250 -208294103 - L1MC4 LINE L1 -882 7011 6518 365 209 112 37 chr1 34370330 34370404 -208293949 - L1ME4a LINE L1 -49 6072 6005 2301 77 0 0 chr1 34370404 34370703 -208293650 + AluY SINE Alu 1 299 -12 365 209 112 37 chr1 34370703 34370815 -208293538 - L1ME4a LINE L1 -116 6005 5872 774 182 40 17 chr1 34370825 34371001 -208293352 + MER58 DNA MER1_type 20 199 -142 766 212 123 24 chr1 34371045 34371338 -208293015 + MLT1G LTR MaLR 269 590 0 913 117 0 0 chr1 34371375 34371503 -208292850 + AluSq/x SINE Alu 18 145 -167 2392 64 0 0 chr1 34371601 34371897 -208292456 + AluY SINE Alu 1 296 -15 266 73 0 0 chr1 34372078 34372119 -208292234 - Alu SINE Alu -3 299 259 865 150 0 0 chr1 34372298 34372425 -208291928 + FLAM_C SINE Alu 2 128 -5 2432 59 7 0 chr1 34372446 34372750 -208291603 + AluY SINE Alu 1 306 -5 2575 91 8 39 chr1 34372763 34373149 -208291204 + THE1C LTR MaLR 1 374 -1 308 83 0 0 chr1 34373157 34373205 -208291148 + Alu SINE Alu 254 301 -1 842 189 115 77 chr1 34373205 34373465 -208290888 + L1ME1 LINE L1 5321 5590 -576 222 62 0 0 chr1 34373472 34373504 -208290849 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1423 191 11 7 chr1 34373504 34373781 -208290572 - AluJb SINE Alu -34 278 1 1225 183 154 19 chr1 34373782 34374287 -208290066 + L1ME1 LINE L1 5584 5906 -260 1210 194 17 24 chr1 34374288 34374579 -208289774 - MER33 DNA MER1_type -46 278 1 2238 100 0 0 chr1 34374669 34374969 -208289384 + AluSq SINE Alu 1 300 -13 2107 111 20 0 chr1 34375193 34375490 -208288863 - AluSq SINE Alu -10 303 1 1989 141 3 3 chr1 34375648 34375960 -208288393 - AluSx SINE Alu 0 312 1 202 341 47 71 chr1 34375993 34376163 -208288190 - L2 LINE L2 -56 3216 3051 2339 81 0 0 chr1 34376223 34376519 -208287834 + AluSc SINE Alu 1 296 -13 1138 139 0 6 chr1 34377255 34377427 -208286926 - AluSp SINE Alu -9 304 134 1416 96 0 5 chr1 34377427 34377615 -208286738 - AluSx SINE Alu -125 187 1 219 292 0 0 chr1 34377731 34377779 -208286574 - L2 LINE L2 -16 3297 3250 202 232 18 18 chr1 34377971 34378027 -208286326 + L2 LINE L2 3216 3271 -1 251 270 139 9 chr1 34378255 34378370 -208285983 + LTR16A LTR ERVL 321 450 0 2416 54 0 3 chr1 34378493 34378788 -208285565 - AluY SINE Alu -17 294 1 209 56 0 28 chr1 34378841 34378877 -208285476 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 936 75 0 0 chr1 34378877 34378997 -208285356 - AluY SINE Alu -191 120 1 653 188 8 17 chr1 34379038 34379155 -208285198 + FLAM_A SINE Alu 1 116 -17 1939 144 7 13 chr1 34379235 34379541 -208284812 + AluSx SINE Alu 1 304 -8 844 293 68 79 chr1 34379544 34379598 -208284755 + L1MC/D LINE L1 4735 4788 -1358 1646 164 134 33 chr1 34379598 34379987 -208284366 + MSTC LTR MaLR 1 428 0 844 293 68 79 chr1 34379987 34380049 -208284304 + L1MC/D LINE L1 4788 4849 -1297 1016 195 0 0 chr1 34380049 34380218 -208284135 - FAM SINE Alu -6 169 1 844 293 68 79 chr1 34380218 34380632 -208283721 + L1MC/D LINE L1 4849 5260 -886 319 279 37 48 chr1 34380634 34380663 -208283690 + L1MC/D LINE L1 5291 5319 -802 2185 103 0 0 chr1 34380663 34380963 -208283390 + AluSx SINE Alu 1 300 -12 186 43 0 0 chr1 34380967 34380990 -208283363 + (CAA)n Simple_repeat Simple_repeat 2 24 0 319 279 37 48 chr1 34380990 34381178 -208283175 + L1MC/D LINE L1 5322 5504 -617 2082 131 0 3 chr1 34381192 34381505 -208282848 - AluSx SINE Alu 0 312 1 2479 181 21 122 chr1 34381520 34382039 -208282314 + L1ME2 LINE L1 5436 6006 -158 2063 110 33 0 chr1 34382039 34382338 -208282015 + AluSx SINE Alu 1 309 -3 2479 181 21 122 chr1 34382338 34382492 -208281861 + L1ME2 LINE L1 6006 6019 -145 1653 158 3 28 chr1 34382492 34382783 -208281570 + AluJb SINE Alu 1 284 -28 2479 181 21 122 chr1 34382783 34382904 -208281449 + L1ME2 LINE L1 6019 6151 -13 2114 117 0 0 chr1 34383075 34383373 -208280980 + AluSx SINE Alu 15 312 0 607 101 0 0 chr1 34383563 34383642 -208280711 + AluJo SINE Alu 2 80 -232 1168 148 23 23 chr1 34383692 34383742 -208280611 + AluJo SINE Alu 85 134 -178 1589 113 124 19 chr1 34383742 34384007 -208280346 + AluSg SINE Alu 1 293 -17 1168 148 23 23 chr1 34384007 34384173 -208280180 + AluJo SINE Alu 133 301 -11 3250 101 25 138 chr1 34384175 34384317 -208280036 - Tigger3b DNA MER2_type -1797 1232 1076 2316 129 18 3 chr1 34384317 34384649 -208279704 + MER1B DNA MER1_type 1 337 0 3250 101 25 138 chr1 34384649 34384754 -208279599 - Tigger3b DNA MER2_type -1953 1076 961 1748 134 18 4 chr1 34384754 34385031 -208279322 - AluSq SINE Alu -32 281 1 3250 101 25 138 chr1 34385031 34385088 -208279265 - Tigger3b DNA MER2_type -2068 961 899 1976 106 0 3 chr1 34385088 34385370 -208278983 + AluSq SINE Alu 1 281 -32 3250 101 25 138 chr1 34385370 34385573 -208278780 - Tigger3b DNA MER2_type -2130 899 675 2049 107 14 0 chr1 34385573 34385863 -208278490 - AluSx SINE Alu -18 294 1 3250 101 25 138 chr1 34385863 34385967 -208278386 - Tigger3b DNA MER2_type -2354 675 561 2271 53 20 0 chr1 34385967 34386266 -208278087 + AluY SINE Alu 1 305 -6 1658 176 20 0 chr1 34386273 34386575 -208277778 + AluJo SINE Alu 1 308 -4 3250 101 25 138 chr1 34386575 34386695 -208277658 - Tigger3b DNA MER2_type -2324 705 573 887 160 0 7 chr1 34386699 34386849 -208277504 - AluJo SINE Alu -163 149 1 2876 141 105 19 chr1 34386851 34386886 -208277467 - Tigger3b DNA MER2_type -2459 569 538 186 71 0 0 chr1 34386886 34386914 -208277439 + (CA)n Simple_repeat Simple_repeat 2 29 0 2876 141 105 19 chr1 34386914 34387176 -208277177 - Tigger3b DNA MER2_type -2490 538 300 2157 99 3 0 chr1 34387176 34387468 -208276885 - AluSg SINE Alu -17 293 1 2876 141 105 19 chr1 34387468 34387693 -208276660 - Tigger3b DNA MER2_type -2728 300 1 1670 158 54 3 chr1 34387864 34388161 -208276192 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 34388264 34388286 -208276067 + AT_rich Low_complexity Low_complexity 1 22 0 655 246 12 47 chr1 34388370 34388541 -208275812 + LTR41 LTR ERVL 1 165 -608 2303 56 3 7 chr1 34388557 34388861 -208275492 - AluY SINE Alu -8 303 1 1862 104 97 0 chr1 34388864 34389143 -208275210 - AluSq SINE Alu -7 306 1 275 196 6 184 chr1 34389370 34389454 -208274899 + LTR41 LTR ERVL 585 628 -145 1285 167 119 11 chr1 34389454 34389723 -208274630 - AluSg1 SINE Alu -11 298 1 275 196 6 184 chr1 34389723 34389801 -208274552 + LTR41 LTR ERVL 628 718 -55 * 1190 194 73 13 chr1 34389789 34390067 -208274286 + MLT2D LTR ERVL 76 364 -50 2203 88 3 0 chr1 34390068 34390380 -208273973 + AluSq SINE Alu 1 313 0 2163 89 17 0 chr1 34390423 34390716 -208273637 + AluSc SINE Alu 1 298 -11 2016 109 3 7 chr1 34390755 34391038 -208273315 - AluSx SINE Alu -30 282 1 1045 146 35 0 chr1 34391040 34391211 -208273142 - AluSq SINE Alu -6 307 131 252 227 53 0 chr1 34391214 34391289 -208273064 + LTR50 LTR ERVL 715 793 -2 253 268 0 0 chr1 34391467 34391523 -208272830 - L2 LINE L2 -225 3047 2992 2252 100 3 0 chr1 34391528 34391839 -208272514 + AluSx SINE Alu 1 312 0 2109 122 0 0 chr1 34391881 34392184 -208272169 - AluSx SINE Alu -1 311 9 2134 75 48 7 chr1 34392190 34392484 -208271869 - AluSx SINE Alu -6 306 1 1137 119 0 17 chr1 34392526 34392683 -208271670 + AluSq SINE Alu 137 292 -21 622 191 7 0 chr1 34392683 34392819 -208271534 + L1MA4 LINE L1 6160 6296 -4 1137 119 0 17 chr1 34392819 34392837 -208271516 + AluSq SINE Alu 292 309 -4 722 248 64 54 chr1 34393208 34393250 -208271103 - MLT1I LTR MaLR -26 383 343 1536 194 8 79 chr1 34393250 34393527 -208270826 - MER58B DNA MER1_type -2079 341 95 1667 169 7 10 chr1 34393527 34393834 -208270519 + AluJb SINE Alu 1 306 -6 1536 194 8 79 chr1 34393834 34393923 -208270430 - MER58B DNA MER1_type -2325 95 1 722 248 64 54 chr1 34393923 34394239 -208270114 - MLT1I LTR MaLR -66 343 51 347 200 250 10 chr1 34394343 34394443 -208269910 + MER5C DNA MER1_type 1 124 -200 850 137 0 0 chr1 34394595 34394726 -208269627 + AluJo/FLAM SINE Alu 1 131 -181 1679 151 6 35 chr1 34394728 34394871 -208269482 + AluJb SINE Alu 1 147 -165 2254 77 7 0 chr1 34394871 34395168 -208269185 + AluY SINE Alu 1 299 -12 1679 151 6 35 chr1 34395168 34395336 -208269017 + AluJb SINE Alu 147 303 -9 2086 112 0 3 chr1 34395467 34395762 -208268591 + AluSx SINE Alu 1 294 -18 376 338 82 15 chr1 34395790 34395991 -208268362 + L1MDa LINE L1 1267 1789 -4682 * 423 283 80 76 chr1 34395971 34395999 -208268354 + HAL1 LINE L1 1309 1335 -1172 1928 155 0 3 chr1 34395999 34396303 -208268050 + AluJb SINE Alu 1 303 -9 423 283 80 76 chr1 34396303 34396408 -208267945 + HAL1 LINE L1 1335 1438 -1069 1998 98 0 76 chr1 34396408 34396736 -208267617 + AluSq SINE Alu 1 303 -10 423 283 80 76 chr1 34396736 34396838 -208267515 + HAL1 LINE L1 1438 1546 -961 274 330 0 0 chr1 34396939 34397036 -208267317 + HAL1 LINE L1 1570 1666 -841 2226 106 0 0 chr1 34397176 34397488 -208266865 - AluSx SINE Alu 0 312 1 2134 121 0 3 chr1 34397535 34397848 -208266505 + AluSx SINE Alu 1 312 0 2237 115 0 0 chr1 34397921 34398226 -208266127 - AluSq SINE Alu -8 305 1 2415 74 0 0 chr1 34398428 34398739 -208265614 + AluY SINE Alu 1 311 0 2163 95 3 3 chr1 34398829 34399123 -208265230 - AluSg SINE Alu -16 294 1 1695 144 53 7 chr1 34399126 34399411 -208264942 - AluJo SINE Alu -14 298 1 821 160 15 0 chr1 34399538 34399669 -208264684 + AluJo/FLAM SINE Alu 1 133 -169 2065 125 0 0 chr1 34399669 34399974 -208264379 + AluSq SINE Alu 1 305 -8 1994 74 102 0 chr1 34400091 34400375 -208263978 + AluSp SINE Alu 1 313 0 1711 86 4 39 chr1 34400483 34400740 -208263613 + AluSp SINE Alu 58 305 -8 280 301 0 124 chr1 34400807 34400884 -208263469 - MLT1-int LTR MaLR -489 882 797 1621 141 65 31 chr1 34400884 34401174 -208263179 - AluJb SINE Alu -7 305 6 280 301 0 124 chr1 34401174 34401305 -208263048 - MLT1-int LTR MaLR -574 797 700 1150 135 60 10 chr1 34401323 34401523 -208262830 - AluJo SINE Alu -102 210 1 22 0 0 0 chr1 34401594 34401616 -208262737 + AT_rich Low_complexity Low_complexity 1 22 0 869 129 8 8 chr1 34401623 34401755 -208262598 - FLAM_C SINE Alu -11 132 1 761 249 21 5 chr1 34401933 34402122 -208262231 - MLT1-int LTR MaLR -764 607 416 2114 110 0 0 chr1 34402308 34402599 -208261754 - AluSx SINE Alu -19 293 3 311 213 234 0 chr1 34402631 34402725 -208261628 - MLT1-int LTR MaLR -1614 121 6 1678 146 45 3 chr1 34402765 34403052 -208261301 + AluJo SINE Alu 1 299 -13 1621 206 60 23 chr1 34403106 34403606 -208260747 + MLT1G LTR MaLR 10 590 0 481 315 133 30 chr1 34403606 34403814 -208260539 + L2 LINE L2 1759 1944 -1370 1547 195 0 13 chr1 34403814 34404122 -208260231 - AluJo SINE Alu -6 306 3 481 315 133 30 chr1 34404122 34404341 -208260012 + L2 LINE L2 1944 2230 -1084 773 123 0 0 chr1 34404348 34404462 -208259891 - AluSg/x SINE Alu 0 309 196 28 0 0 0 chr1 34404466 34404494 -208259859 + AT_rich Low_complexity Low_complexity 1 28 0 552 289 209 44 chr1 34404494 34405290 -208259063 + L2 LINE L2 2376 3286 -27 2259 91 7 0 chr1 34405306 34405614 -208258739 + AluSg SINE Alu 1 310 0 2174 113 0 0 chr1 34405813 34406123 -208258230 - AluSg SINE Alu 0 310 1 27 49 0 0 chr1 34407429 34407470 -208256883 + GC_rich Low_complexity Low_complexity 1 41 0 26 88 0 0 chr1 34407482 34407550 -208256803 + GC_rich Low_complexity Low_complexity 1 68 0 37 39 0 0 chr1 34407715 34407766 -208256587 + GC_rich Low_complexity Low_complexity 1 51 0 31 58 0 0 chr1 34407893 34407945 -208256408 + GC_rich Low_complexity Low_complexity 1 52 0 205 174 64 156 chr1 34408368 34408477 -208255876 - MIR SINE MIR -51 211 113 677 230 138 30 chr1 34409121 34409434 -208254919 + L2 LINE L2 2720 3057 -256 1154 154 93 125 chr1 34409479 34409855 -208254498 - MLT1A1 LTR MaLR 0 365 2 363 167 0 0 chr1 34409873 34409927 -208254426 + Tigger5 DNA MER2_type 1 54 -2269 586 156 0 0 chr1 34409935 34410025 -208254328 + Tigger5 DNA MER2_type 2234 2323 0 1794 101 10 78 chr1 34410221 34410529 -208253824 + AluSg SINE Alu 1 287 -23 2284 74 0 32 chr1 34411023 34411333 -208253020 - AluSq SINE Alu -13 300 1 1303 201 27 24 chr1 34411333 34411627 -208252726 - L1MB7 LINE L1 -21 6163 5869 2318 72 0 0 chr1 34411631 34411922 -208252431 - AluY SINE Alu -18 293 3 846 195 19 0 chr1 34411924 34412083 -208252270 - AluJb SINE Alu -16 296 135 2250 174 2 29 chr1 34412083 34412122 -208252231 - L1MB7 LINE L1 -312 5872 5833 2197 104 43 43 chr1 34412122 34412364 -208251989 - MER7A DNA MER2_type -2692 346 105 1886 129 4 0 chr1 34412364 34412644 -208251709 + AluSx SINE Alu 1 281 -31 186 43 0 0 chr1 34412648 34412671 -208251682 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2197 104 43 43 chr1 34412671 34412769 -208251584 - MER7A DNA MER2_type -2935 103 3 2250 174 2 29 chr1 34412769 34413144 -208251209 - L1MB7 LINE L1 -351 5833 5469 211 234 0 0 chr1 34413151 34413198 -208251155 + A-rich Low_complexity Low_complexity 1 47 0 701 124 9 0 chr1 34413219 34413324 -208251029 - L1MB7 LINE L1 -711 5469 5364 394 206 61 53 chr1 34413350 34413481 -208250872 - MIR SINE MIR -65 197 66 506 340 20 98 chr1 34413554 34414054 -208250299 + L2 LINE L2 2807 3267 -5 2110 120 0 0 chr1 34414119 34414420 -208249933 + AluSx SINE Alu 10 310 -2 752 202 77 18 chr1 34414432 34414600 -208249753 + AluJb SINE Alu 122 299 -13 1958 146 0 7 chr1 34414850 34415152 -208249201 - AluJb SINE Alu -12 300 1 1042 133 0 46 chr1 34415297 34415470 -208248883 - FRAM SINE Alu -1 165 1 433 125 0 0 chr1 34415532 34415604 -208248749 + Alu SINE Alu 240 311 -1 848 128 0 47 chr1 34415644 34415793 -208248560 + AluJb SINE Alu 171 312 0 2221 106 0 3 chr1 34415800 34416111 -208248242 + AluSg SINE Alu 1 310 0 2090 108 3 0 chr1 34416272 34416569 -208247784 - AluSx SINE Alu -1 311 14 457 232 16 56 chr1 34416689 34416814 -208247539 - MIR SINE MIR 0 262 143 251 125 0 0 chr1 34416814 34416854 -208247499 - MSTA LTR MaLR 0 428 389 1812 138 11 0 chr1 34416859 34417157 -208247196 + AluSg SINE Alu 1 301 0 2147 105 7 0 chr1 34417161 34417456 -208246897 + AluSq SINE Alu 2 298 -15 611 219 7 58 chr1 34417554 34417709 -208246644 + FRAM SINE Alu 23 169 -7 237 264 27 55 chr1 34417878 34417988 -208246365 - MLT2F LTR ERVL -519 144 38 * 250 194 56 56 chr1 34417920 34417992 -208246361 - MLT1J LTR MaLR -341 170 99 860 101 34 0 chr1 34418025 34418144 -208246209 + FLAM_C SINE Alu 2 124 -9 1655 162 6 32 chr1 34418280 34418594 -208245759 + AluJb SINE Alu 1 306 -6 2295 70 7 0 chr1 34418625 34418923 -208245430 + AluSq SINE Alu 1 300 -13 1471 164 90 0 chr1 34419112 34419380 -208244973 + AluJb SINE Alu 1 292 -20 1936 117 21 0 chr1 34419382 34419672 -208244681 + AluSp SINE Alu 2 297 -16 655 214 8 0 chr1 34419694 34419820 -208244533 - FLAM_C SINE Alu -5 128 2 1858 177 7 0 chr1 34420032 34420320 -208244033 + AluJb SINE Alu 3 292 -20 2129 121 0 19 chr1 34420326 34420641 -208243712 + AluSx SINE Alu 1 309 -3 24 77 0 0 chr1 34420714 34420766 -208243587 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr1 34420812 34420845 -208243508 + AT_rich Low_complexity Low_complexity 1 33 0 201 121 73 65 chr1 34420845 34420932 -208243421 + (TTATA)n Simple_repeat Simple_repeat 6 126 0 2193 125 0 0 chr1 34421013 34421308 -208243045 - AluSx SINE Alu -17 295 1 21 36 0 0 chr1 34421309 34421337 -208243016 + AT_rich Low_complexity Low_complexity 1 28 0 2494 76 3 0 chr1 34421553 34421854 -208242499 + AluSp SINE Alu 1 302 -11 2168 120 7 0 chr1 34421866 34422167 -208242186 + AluSx SINE Alu 1 303 -9 1862 99 80 0 chr1 34422409 34422727 -208241626 - AluSx SINE Alu 0 339 1 348 336 16 8 chr1 34422849 34422974 -208241379 - MIR3 SINE MIR -40 168 43 202 162 0 0 chr1 34423019 34423056 -208241297 + MIR SINE MIR 127 163 -99 2357 73 0 0 chr1 34423056 34423342 -208241011 + AluY SINE Alu 1 286 -25 208 129 32 81 chr1 34423344 34423406 -208240947 + MIR SINE MIR 146 204 -58 34 0 0 22 chr1 34423836 34423867 -208240486 + AT_rich Low_complexity Low_complexity 1 32 -12 1223 143 58 104 chr1 34423867 34424010 -208240343 - AluJo SINE Alu -18 294 171 2303 108 13 0 chr1 34424010 34424316 -208240037 - AluSg SINE Alu 0 310 1 1223 143 58 104 chr1 34424316 34424480 -208239873 - AluJo SINE Alu -141 171 1 34 0 0 22 chr1 34424480 34424493 -208239860 + AT_rich Low_complexity Low_complexity 32 44 0 2241 115 0 3 chr1 34424544 34424848 -208239505 + AluSc SINE Alu 1 303 -6 2225 108 0 3 chr1 34424968 34425256 -208239097 + AluSx SINE Alu 1 287 -25 31 44 0 0 chr1 34425382 34425427 -208238926 + AT_rich Low_complexity Low_complexity 1 45 0 1608 163 8 12 chr1 34425455 34425712 -208238641 - AluJo SINE Alu -56 256 1 234 203 68 68 chr1 34425749 34425823 -208238530 + L2 LINE L2 2205 2278 -1036 333 0 0 0 chr1 34426387 34426424 -208237929 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 256 54 62 chr1 34426811 34426940 -208237413 - MIR SINE MIR -15 247 120 1771 130 0 0 chr1 34427064 34427317 -208237036 - AluSx SINE Alu -16 296 44 1582 148 165 62 chr1 34427340 34427406 -208236947 + MSTC LTR MaLR 1 59 -369 1960 160 0 3 chr1 34427406 34427712 -208236641 - AluJb SINE Alu -6 306 2 1582 148 165 62 chr1 34427712 34427849 -208236504 + MSTC LTR MaLR 59 180 -248 2578 114 72 8 chr1 34427849 34428251 -208236102 - MSTA LTR MaLR 0 428 1 1582 148 165 62 chr1 34428251 34428385 -208235968 + MSTC LTR MaLR 180 374 -54 303 93 0 173 chr1 34428427 34428502 -208235851 + MSTC LTR MaLR 361 422 -6 2096 137 6 19 chr1 34428560 34428874 -208235479 - AluSx SINE Alu -2 310 1 284 350 81 25 chr1 34429087 34429284 -208235069 + L2 LINE L2 2837 3044 -228 1244 203 36 73 chr1 34429296 34429518 -208234835 - MLT1C LTR MaLR -65 402 200 643 173 55 8 chr1 34429518 34429645 -208234708 - FLAM_C SINE Alu 0 133 1 1244 203 36 73 chr1 34429645 34429835 -208234518 - MLT1C LTR MaLR -267 200 5 1683 149 41 60 chr1 34429889 34430204 -208234149 - AluJo SINE Alu -3 309 1 2295 78 3 17 chr1 34430226 34430519 -208233834 - AluSp SINE Alu -24 289 1 2155 112 3 22 chr1 34430519 34430831 -208233522 - AluSx SINE Alu -5 307 1 600 181 9 0 chr1 34431201 34431306 -208233047 + FRAM SINE Alu 2 107 -69 2136 137 0 31 chr1 34431399 34431721 -208232632 - AluSx SINE Alu 0 312 1 219 311 0 0 chr1 34432788 34432849 -208231504 - L3 LINE CR1 -11 1566 1506 287 176 0 0 chr1 34432945 34432996 -208231357 + MER112 DNA MER1_type 1 51 -209 1699 177 16 29 chr1 34432996 34433306 -208231047 + AluJb SINE Alu 1 306 -6 1680 159 14 17 chr1 34433316 34433606 -208230747 + AluJo SINE Alu 1 289 -23 27 0 0 0 chr1 34433606 34433633 -208230720 + AT_rich Low_complexity Low_complexity 1 27 0 397 280 59 0 chr1 34433703 34433821 -208230532 - L2 LINE L2 0 3313 3189 2518 69 0 3 chr1 34433868 34434171 -208230182 + AluY SINE Alu 1 302 -9 1818 161 0 35 chr1 34434180 34434491 -208229862 + AluJb SINE Alu 1 300 -12 293 182 61 0 chr1 34434506 34434572 -208229781 - L3 LINE CR1 -276 1301 1232 293 268 24 81 chr1 34434650 34434773 -208229580 - L2 LINE L2 -248 3065 2950 289 217 52 52 chr1 34434808 34434923 -208229430 - L2 LINE L2 -459 2855 2741 2213 123 131 8 chr1 34434961 34435342 -208229011 - MSTA LTR MaLR 0 428 1 2506 74 7 0 chr1 34435461 34435770 -208228583 + AluY SINE Alu 1 311 0 2112 108 0 30 chr1 34435810 34436106 -208228247 + AluSg SINE Alu 3 289 -21 4816 203 74 54 chr1 34436106 34436339 -208228014 - L1ME2 LINE L1 -10 6223 5996 2569 51 0 0 chr1 34436339 34436634 -208227719 - AluY SINE Alu -16 295 1 4816 203 74 54 chr1 34436634 34437330 -208227023 - L1ME2 LINE L1 -237 5996 5315 2487 81 3 0 chr1 34437330 34437640 -208226713 - AluY SINE Alu 0 311 1 4816 203 74 54 chr1 34437640 34437728 -208226625 - L1ME2 LINE L1 -918 5315 5230 774 149 0 71 chr1 34437728 34437869 -208226484 - FLAM_C SINE Alu 0 133 3 4816 203 74 54 chr1 34437869 34438825 -208225528 - L1ME2 LINE L1 -1003 5230 4217 2296 107 0 0 chr1 34438825 34439124 -208225229 - AluSx SINE Alu -13 299 1 4816 203 74 54 chr1 34439124 34439514 -208224839 - L1ME2 LINE L1 -2016 4217 3836 2227 112 0 7 chr1 34439530 34439825 -208224528 - AluSx SINE Alu -19 293 1 1257 139 0 0 chr1 34439849 34440022 -208224331 - AluSg/x SINE Alu -9 301 129 2772 201 58 104 chr1 34440022 34440344 -208224009 - L1ME2 LINE L1 -2409 3806 3471 2223 130 0 3 chr1 34440344 34440645 -208223708 - AluSx SINE Alu -12 300 1 2772 201 58 104 chr1 34440645 34441016 -208223337 - L1ME2 LINE L1 -2744 3471 3085 2338 82 0 16 chr1 34441016 34441322 -208223031 - AluSg SINE Alu -9 301 1 2772 201 58 104 chr1 34441322 34441371 -208222982 - L1ME2 LINE L1 -3130 3085 3035 1957 158 3 13 chr1 34441371 34441682 -208222671 - AluJb SINE Alu -4 308 1 2772 201 58 104 chr1 34441682 34441741 -208222612 - L1ME2 LINE L1 -3180 3035 2975 2489 74 0 7 chr1 34441741 34442051 -208222302 + AluSp SINE Alu 1 308 -5 2772 201 58 104 chr1 34442051 34442271 -208222082 - L1ME2 LINE L1 -3240 2975 2841 1703 164 31 10 chr1 34442271 34442564 -208221789 + AluJo SINE Alu 1 299 -13 2772 201 58 104 chr1 34442564 34442721 -208221632 - L1ME2 LINE L1 -3374 2841 2678 1624 193 13 7 chr1 34442722 34443023 -208221330 - AluJo SINE Alu -9 303 1 460 248 28 0 chr1 34443023 34443164 -208221189 - L1ME2 LINE L1 -4094 2302 2158 385 216 32 53 chr1 34443147 34443165 -208221188 - L1ME2 LINE L1 -4185 2211 2194 * 2337 101 7 0 chr1 34443165 34443473 -208220880 - AluSg SINE Alu 0 310 1 385 216 32 53 chr1 34443473 34443525 -208220828 - L1ME2 LINE L1 -4202 2194 2142 1512 205 0 13 chr1 34443525 34443823 -208220530 + AluJo SINE Alu 11 304 -8 385 216 32 53 chr1 34443823 34443941 -208220412 - L1ME2 LINE L1 -4254 2142 2026 841 226 4 113 chr1 34443998 34444237 -208220116 + MER58A DNA MER1_type 11 223 -1 227 274 0 0 chr1 34444313 34444364 -208219989 - L1ME2 LINE L1 -4985 1220 1170 2335 95 7 0 chr1 34444383 34444677 -208219676 - AluSq SINE Alu -17 296 1 979 115 0 0 chr1 34444677 34444807 -208219546 - AluSq/x SINE Alu -176 136 7 2208 117 3 7 chr1 34444815 34445122 -208219231 - AluSx SINE Alu -6 306 1 1129 109 0 0 chr1 34445144 34445291 -208219062 - AluSg/x SINE Alu -13 297 151 688 142 0 0 chr1 34445291 34445397 -208218956 - AluJo/FLAM SINE Alu -205 107 2 659 251 103 92 chr1 34445398 34445532 -208218821 - L1ME2 LINE L1 -5210 1186 1055 1886 151 37 7 chr1 34445532 34445831 -208218522 - AluSx SINE Alu -4 308 1 659 251 103 92 chr1 34445831 34445860 -208218493 - L1ME2 LINE L1 -5341 1055 1028 2104 118 0 14 chr1 34445860 34446019 -208218334 - AluSx SINE Alu -20 292 137 1922 121 36 42 chr1 34446019 34446325 -208218028 - AluSx SINE Alu -8 304 1 2104 118 0 14 chr1 34446325 34446461 -208217892 - AluSx SINE Alu -175 137 1 659 251 103 92 chr1 34446461 34446640 -208217713 - L1ME2 LINE L1 -5368 1028 852 212 0 36 0 chr1 34446640 34446668 -208217685 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 949 191 0 0 chr1 34446669 34446826 -208217527 - FAM SINE Alu -18 157 1 659 251 103 92 chr1 34446826 34447115 -208217238 - L1ME2 LINE L1 -5544 852 541 2309 106 0 6 chr1 34447115 34447427 -208216926 + AluSx SINE Alu 1 310 -2 659 251 103 92 chr1 34447427 34447472 -208216881 - L1ME2 LINE L1 -5855 541 498 503 252 32 41 chr1 34447628 34447846 -208216507 - L1ME2 LINE L1 -6173 223 8 935 150 17 46 chr1 34448028 34448201 -208216152 + AluSg/x SINE Alu 135 302 -8 1961 135 27 17 chr1 34448220 34448517 -208215836 + AluSx SINE Alu 1 300 -12 295 313 0 10 chr1 34448521 34448617 -208215736 + L1ME LINE L1 5491 5585 -536 1241 182 151 23 chr1 34448665 34449016 -208215337 - MSTD LTR MaLR 0 396 1 389 95 93 0 chr1 34449028 34449416 -208214937 + (TA)n Simple_repeat Simple_repeat 1 424 0 2324 96 0 0 chr1 34449416 34449707 -208214646 - AluSq SINE Alu -22 291 1 1837 143 70 17 chr1 34449730 34450086 -208214267 - THE1C LTR MaLR 0 375 1 1572 137 9 0 chr1 34450188 34450421 -208213932 + MER46A DNA MER2_type 1 235 -1 2248 96 24 0 chr1 34450421 34450712 -208213641 + AluSp SINE Alu 1 298 -15 2044 136 7 7 chr1 34451154 34451455 -208212898 + AluJb SINE Alu 1 301 -11 278 217 0 14 chr1 34451541 34451610 -208212743 + L1M4 LINE L1 3806 3873 -2273 1614 174 65 119 chr1 34451611 34451805 -208212548 + MLT1C LTR MaLR 1 204 -263 2044 123 0 45 chr1 34451805 34452113 -208212240 - AluSx SINE Alu -18 294 1 1614 174 65 119 chr1 34452113 34452412 -208211941 + MLT1C LTR MaLR 204 467 0 1908 160 0 25 chr1 34452556 34452875 -208211478 - AluJo SINE Alu -1 311 1 900 275 97 38 chr1 34452877 34453079 -208211274 + L1M4 LINE L1 4027 4215 -1931 1759 149 62 0 chr1 34453079 34453367 -208210986 - AluJo SINE Alu -4 308 3 900 275 97 38 chr1 34453367 34453698 -208210655 + L1M4 LINE L1 4215 4592 -1554 2366 94 0 3 chr1 34453775 34454083 -208210270 + AluSq SINE Alu 1 307 -6 2172 98 7 10 chr1 34454091 34454386 -208209967 + AluSp SINE Alu 1 294 -19 1718 243 156 25 chr1 34454417 34455018 -208209335 - L2 LINE L2 -2 3311 2545 2285 74 21 0 chr1 34455018 34455302 -208209051 + AluSq SINE Alu 1 290 -23 1718 243 156 25 chr1 34455302 34455543 -208208810 - L2 LINE L2 -768 2545 2337 802 144 0 0 chr1 34455554 34455672 -208208681 + FLAM_C SINE Alu 1 118 -15 30 0 0 0 chr1 34455672 34455702 -208208651 + AT_rich Low_complexity Low_complexity 1 30 0 4293 172 49 8 chr1 34455707 34456441 -208207912 + MER21B LTR ERV1 1 764 -99 1287 248 73 65 chr1 34456441 34456757 -208207596 - L2 LINE L2 -1101 2213 1890 2309 110 0 0 chr1 34456757 34457049 -208207304 + AluSx SINE Alu 1 292 -20 1287 248 73 65 chr1 34457049 34457228 -208207125 - L2 LINE L2 -1424 1890 1714 315 148 0 0 chr1 34457233 34457287 -208207066 - Alu SINE Alu 0 302 249 2321 95 0 0 chr1 34457311 34457606 -208206747 - AluSx SINE Alu -17 295 1 2148 117 0 7 chr1 34457608 34457907 -208206446 - AluSx SINE Alu -15 297 1 425 266 70 21 chr1 34457990 34458133 -208206220 - L1MEd LINE L1 -5421 698 549 933 105 0 8 chr1 34458156 34458289 -208206064 - FLAM_C SINE Alu -1 132 1 527 302 44 22 chr1 34458290 34458515 -208205838 - L1MEd LINE L1 -5558 561 332 418 280 114 0 chr1 34458618 34458750 -208205603 - L1MEd LINE L1 -5969 150 4 231 255 70 70 chr1 34458762 34458919 -208205434 + L2 LINE L2 2982 3138 -175 2079 124 0 49 chr1 34458958 34459264 -208205089 - AluSx SINE Alu -21 291 1 1752 149 0 40 chr1 34459273 34459574 -208204779 - AluJo SINE Alu -23 289 1 826 128 30 38 chr1 34459686 34459819 -208204534 + FLAM_C SINE Alu 1 132 -1 2249 79 7 0 chr1 34459879 34460196 -208204157 - AluSc SINE Alu 0 319 1 1522 134 11 65 chr1 34460343 34460544 -208203809 + AluJo SINE Alu 35 218 -94 2268 100 0 22 chr1 34460544 34460863 -208203490 - AluSx SINE Alu 0 312 1 1522 134 11 65 chr1 34460863 34460938 -208203415 + AluJo SINE Alu 218 296 -16 2277 106 0 7 chr1 34461970 34462271 -208202082 + AluSx SINE Alu 6 304 -8 28 48 0 0 chr1 34462290 34462332 -208202021 + AT_rich Low_complexity Low_complexity 1 42 0 2274 100 0 17 chr1 34462536 34462837 -208201516 + AluSg SINE Alu 1 296 -14 202 229 0 0 chr1 34462979 34463027 -208201326 + T-rich Low_complexity Low_complexity 1 48 0 2227 119 6 3 chr1 34463311 34463623 -208200730 - AluSq SINE Alu 0 313 1 572 107 0 0 chr1 34463623 34463707 -208200646 - AluJ/FRAM SINE Alu -10 302 219 2109 118 0 26 chr1 34463707 34464013 -208200340 - AluJb SINE Alu -14 298 1 1796 145 9 50 chr1 34464046 34464143 -208200210 + AluSx SINE Alu 1 100 -212 2572 51 0 3 chr1 34464143 34464439 -208199914 + AluY SINE Alu 1 295 -16 1796 145 9 50 chr1 34464439 34464659 -208199694 + AluSx SINE Alu 100 305 -7 2193 100 42 0 chr1 34465058 34465347 -208199006 - AluSx SINE Alu -8 304 4 1030 253 65 32 chr1 34465356 34465727 -208198626 - L1MC4 LINE L1 -964 7078 6696 1958 121 28 42 chr1 34465797 34466109 -208198244 - AluSx SINE Alu 0 308 1 2304 118 0 13 chr1 34466279 34466592 -208197761 - AluSx SINE Alu -3 309 1 21 0 0 0 chr1 34466686 34466707 -208197646 + AT_rich Low_complexity Low_complexity 1 21 0 262 197 0 49 chr1 34466793 34466854 -208197499 - MIR SINE MIR -42 220 163 26 0 0 0 chr1 34467159 34467185 -208197168 + AT_rich Low_complexity Low_complexity 1 26 0 1145 168 34 38 chr1 34467280 34467489 -208196864 + AluJb SINE Alu 86 293 -19 2246 96 0 0 chr1 34467493 34467820 -208196533 + AluSg SINE Alu 2 328 0 2368 83 10 3 chr1 34469249 34469550 -208194803 + AluSq SINE Alu 1 303 -10 208 196 137 0 chr1 34469638 34469689 -208194664 - MIR SINE MIR -96 166 109 2474 70 7 0 chr1 34470103 34470404 -208193949 + AluSp SINE Alu 1 303 -10 2571 61 0 3 chr1 34470596 34470906 -208193447 - AluY SINE Alu -2 309 1 2191 84 3 0 chr1 34471197 34471483 -208192870 - AluSg SINE Alu -23 287 1 2317 69 10 0 chr1 34472924 34473227 -208191126 + AluSx SINE Alu 1 306 -6 2233 106 0 3 chr1 34473477 34473789 -208190564 + AluSx SINE Alu 1 311 -1 7536 166 102 49 chr1 34474011 34475674 -208188679 - MER52A LTR ERV1 0 1755 5 2032 128 7 0 chr1 34476120 34476417 -208187936 + AluSx SINE Alu 1 299 -13 549 176 151 8 chr1 34476677 34476796 -208187557 + MER5B DNA MER1_type 1 136 -42 2353 65 0 0 chr1 34476801 34477091 -208187262 + AluSc SINE Alu 1 290 -19 1614 163 7 30 chr1 34477095 34477390 -208186963 + AluJo SINE Alu 1 288 -24 387 0 0 0 chr1 34477393 34477436 -208186917 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2112 99 17 0 chr1 34478253 34478545 -208185808 - AluSx SINE Alu -15 297 1 2131 96 14 0 chr1 34478601 34478894 -208185459 + AluSq SINE Alu 3 299 -14 1463 162 7 52 chr1 34479046 34479355 -208184998 + AluJo SINE Alu 13 307 -5 2170 86 33 0 chr1 34479695 34479998 -208184355 + AluSq SINE Alu 1 313 0 1824 104 7 7 chr1 34480471 34480741 -208183612 - AluSx SINE Alu -42 270 1 1351 180 70 0 chr1 34481027 34481127 -208183226 + AluJo SINE Alu 1 93 -219 4897 85 19 27 chr1 34481127 34481820 -208182533 + LTR8 LTR ERV1 5 691 0 1351 180 70 0 chr1 34481820 34481991 -208182362 + AluJo SINE Alu 93 291 -21 2142 102 10 0 chr1 34481991 34482285 -208182068 + AluSx SINE Alu 1 297 -15 1265 40 7 0 chr1 34482285 34482435 -208181918 - MER4E LTR ERV1 -615 151 1 609 14 0 0 chr1 34482484 34482554 -208181799 + (TTATA)n Simple_repeat Simple_repeat 3 72 0 1141 74 0 0 chr1 34482560 34482708 -208181645 - AluSg/x SINE Alu -20 292 145 1897 96 0 8 chr1 34482709 34482970 -208181383 + AluSc SINE Alu 34 292 -17 2230 86 3 0 chr1 34483199 34483491 -208180862 - AluSp SINE Alu -20 293 1 2226 98 0 0 chr1 34483565 34483860 -208180493 - AluSq SINE Alu -18 295 1 220 328 0 0 chr1 34483952 34484013 -208180340 - MIR3 SINE MIR -27 181 121 888 152 0 0 chr1 34484290 34484422 -208179931 + FLAM_C SINE Alu 2 133 0 2216 79 0 20 chr1 34484439 34484742 -208179611 + AluY SINE Alu 1 297 -14 1398 170 23 4 chr1 34484835 34485100 -208179253 - AluJb SINE Alu -6 306 37 2121 110 3 0 chr1 34485400 34485700 -208178653 - AluSg1 SINE Alu -8 301 1 379 253 86 52 chr1 34485780 34485954 -208178399 + Charlie8 DNA MER1_type 106 285 -2132 2205 107 3 3 chr1 34486356 34486666 -208177687 - AluSp SINE Alu -3 310 1 23 78 0 0 chr1 34486687 34486738 -208177615 + AT_rich Low_complexity Low_complexity 1 51 0 508 107 40 0 chr1 34486806 34486881 -208177472 + MER51A LTR ERV1 1 78 -556 1865 124 25 44 chr1 34486920 34487235 -208177118 + MER51A LTR ERV1 326 634 0 2003 128 0 3 chr1 34487287 34487584 -208176769 - AluJb SINE Alu -16 296 1 1927 129 0 10 chr1 34487934 34488236 -208176117 - AluSx SINE Alu -13 299 1 1734 160 14 7 chr1 34488543 34488831 -208175522 + AluJo SINE Alu 1 290 -22 2295 91 3 0 chr1 34489174 34489481 -208174872 + AluY SINE Alu 1 308 -3 235 330 110 10 chr1 34490201 34490301 -208174052 + MIR SINE MIR 36 145 -63 3061 124 37 8 chr1 34490302 34490793 -208173560 + L1PA15 LINE L1 5661 6165 0 197 203 0 102 chr1 34491098 34491157 -208173196 + MIR3 SINE MIR 152 204 -4 861 296 182 9 chr1 34491259 34491688 -208172665 + L2 LINE L2 1079 1581 -1733 853 276 179 26 chr1 34491714 34491894 -208172459 + L2 LINE L2 2825 2976 -337 2558 98 11 21 chr1 34491894 34492271 -208172082 + THE1C LTR MaLR 1 373 -2 853 276 179 26 chr1 34492271 34492514 -208171839 + L2 LINE L2 2976 3313 0 2218 105 0 0 chr1 34492667 34492962 -208171391 + AluSx SINE Alu 1 295 -17 2092 104 10 0 chr1 34492997 34493294 -208171059 + AluSx SINE Alu 1 300 -12 1866 114 40 4 chr1 34493317 34493629 -208170724 + AluSx SINE Alu 1 322 0 632 202 0 25 chr1 34493655 34493774 -208170579 + FLAM_A SINE Alu 10 125 -17 1943 128 48 39 chr1 34493850 34493926 -208170427 + MER7A DNA MER2_type 1 75 -2963 2227 93 0 7 chr1 34493926 34494228 -208170125 - AluSq SINE Alu -13 300 1 1943 128 48 39 chr1 34494228 34494487 -208169866 + MER7A DNA MER2_type 75 337 -9 1188 194 49 74 chr1 34494509 34494593 -208169760 + MER58B DNA MER1_type 1 86 -2334 2115 119 3 0 chr1 34494593 34494904 -208169449 - AluSx SINE Alu 0 312 1 1188 194 49 74 chr1 34494904 34495169 -208169184 + MER58B DNA MER1_type 86 341 0 269 309 111 6 chr1 34495221 34495383 -208168970 - MIR3 SINE MIR 0 208 30 1576 159 10 34 chr1 34495810 34496106 -208168247 + AluJo SINE Alu 1 289 -23 1911 84 7 46 chr1 34496118 34496403 -208167950 + AluSp SINE Alu 1 274 -39 2293 84 3 0 chr1 34496410 34496706 -208167647 + AluSx SINE Alu 1 297 -15 1658 158 31 3 chr1 34496718 34497010 -208167343 + AluSg SINE Alu 1 300 -10 1833 164 0 16 chr1 34497184 34497501 -208166852 + AluJo SINE Alu 1 312 0 2258 101 0 0 chr1 34497798 34498105 -208166248 - AluSc SINE Alu -1 308 2 195 69 0 0 chr1 34498128 34498157 -208166196 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 808 94 11 171 chr1 34498228 34498300 -208166053 + AluJo SINE Alu 72 154 -158 1377 139 19 104 chr1 34498300 34498609 -208165744 + AluJo SINE Alu 1 283 -29 198 0 0 0 chr1 34498609 34498631 -208165722 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 808 94 11 171 chr1 34498631 34498738 -208165615 + AluJo SINE Alu 152 223 -89 1945 123 19 7 chr1 34498784 34499092 -208165261 + AluSx SINE Alu 1 312 0 1811 167 3 0 chr1 34499129 34499440 -208164913 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 34499947 34499969 -208164384 + AT_rich Low_complexity Low_complexity 1 22 0 2248 95 0 22 chr1 34500048 34500364 -208163989 - AluSx SINE Alu -3 309 1 1150 165 5 36 chr1 34500468 34500692 -208163661 - AluJb SINE Alu -10 302 86 423 153 0 59 chr1 34500803 34500888 -208163465 + MER66B LTR ERV1 315 394 -92 686 223 7 0 chr1 34501297 34501436 -208162917 + FLAM_C SINE Alu 2 141 -2 2207 103 0 3 chr1 34502270 34502581 -208161772 - AluSg SINE Alu 0 310 1 499 104 26 0 chr1 34502584 34502661 -208161692 - Alu SINE Alu -11 301 223 466 81 0 0 chr1 34503054 34503139 -208161214 + Alu SINE Alu 220 304 0 2199 90 0 13 chr1 34503332 34503631 -208160722 - AluSx SINE Alu -17 295 1 267 277 36 36 chr1 34503662 34503725 -208160628 - MIR3 SINE MIR -6 202 137 3052 161 42 83 chr1 34503725 34504446 -208159907 + LTR8 LTR ERV1 1 691 0 267 277 36 36 chr1 34504446 34504465 -208159888 - MIR3 SINE MIR -70 138 120 1963 104 27 3 chr1 34504466 34504763 -208159590 + AluSq SINE Alu 3 306 -7 2549 177 103 21 chr1 34504779 34505305 -208159048 + MER67B LTR ERV1 93 661 0 1005 210 18 56 chr1 34505308 34505337 -208159016 + L1ME2 LINE L1 5874 5903 -261 1984 107 7 20 chr1 34505337 34505637 -208158716 + AluSg SINE Alu 1 296 -14 1005 210 18 56 chr1 34505637 34505893 -208158460 + L1ME2 LINE L1 5903 6148 -16 1771 143 0 17 chr1 34505896 34506190 -208158163 - AluSx SINE Alu -21 291 3 23 54 0 0 chr1 34506192 34506229 -208158124 + AT_rich Low_complexity Low_complexity 1 37 0 213 39 0 0 chr1 34506283 34506309 -208158044 + (T)n Simple_repeat Simple_repeat 1 26 0 1713 97 4 0 chr1 34506319 34506545 -208157808 - AluSc SINE Alu -82 227 1 674 164 22 0 chr1 34506552 34506686 -208157667 - Charlie1 DNA MER1_type -33 2728 2592 1793 163 0 3 chr1 34506686 34506980 -208157373 + AluSx SINE Alu 1 293 -19 1489 189 0 14 chr1 34507007 34507292 -208157061 + AluJo SINE Alu 1 281 -31 225 242 65 16 chr1 34507296 34507358 -208156995 - Charlie1a DNA MER1_type -1247 208 144 * 368 150 0 50 chr1 34507342 34507422 -208156931 - AluJ/FRAM SINE Alu 0 302 227 663 161 0 73 chr1 34507438 34507575 -208156778 - FRAM SINE Alu -38 138 12 819 195 32 0 chr1 34507575 34507729 -208156624 - Charlie1a DNA MER1_type -1291 164 6 333 235 141 0 chr1 34507734 34507819 -208156534 + L1ME3A LINE L1 6065 6161 -9 1861 148 7 10 chr1 34507829 34508133 -208156220 + AluSx SINE Alu 1 303 -9 554 189 0 0 chr1 34508133 34508228 -208156125 - FAM SINE Alu -30 155 61 528 146 256 82 chr1 34508249 34508291 -208156062 - Charlie1 DNA MER1_type -196 2565 2532 1350 217 17 17 chr1 34508291 34508586 -208155767 + AluJo SINE Alu 3 297 -5 528 146 256 82 chr1 34508586 34508762 -208155591 - Charlie1 DNA MER1_type -229 2532 2309 364 106 0 0 chr1 34508762 34508809 -208155544 + HY3 scRNA scRNA 1 47 -54 906 100 14 14 chr1 34509336 34509476 -208154877 + AluSg/x SINE Alu 154 293 -19 574 146 204 131 chr1 34509476 34509531 -208154822 + Charlie1 DNA MER1_type 2271 2321 -440 648 139 0 0 chr1 34509531 34509632 -208154721 - HY3 scRNA scRNA 0 101 1 574 146 204 131 chr1 34509632 34509808 -208154545 + Charlie1 DNA MER1_type 2321 2527 -234 1350 217 17 17 chr1 34509808 34510103 -208154250 - AluJo SINE Alu -5 297 3 574 146 204 131 chr1 34510103 34510145 -208154208 + Charlie1 DNA MER1_type 2527 2565 -196 582 179 0 0 chr1 34510166 34510261 -208154092 + FAM SINE Alu 61 155 -30 2033 137 0 10 chr1 34510261 34510567 -208153786 - AluSx SINE Alu -9 303 1 1709 170 0 3 chr1 34510664 34510952 -208153401 - AluSx SINE Alu -25 287 1 322 200 35 0 chr1 34510952 34511037 -208153316 + Charlie1 DNA MER1_type 2592 2679 -82 1230 189 111 18 chr1 34511618 34511680 -208152673 - MER4E LTR ERV1 -231 535 480 1985 118 3 13 chr1 34511680 34511985 -208152368 + AluSc SINE Alu 1 302 -7 1230 189 111 18 chr1 34511985 34512226 -208152127 - MER4E LTR ERV1 -286 480 219 1866 109 4 0 chr1 34512226 34512492 -208151861 - AluSx SINE Alu -5 307 41 724 84 0 11 chr1 34514355 34514450 -208149903 - AluY SINE Alu -207 104 11 287 182 0 0 chr1 34514450 34514494 -208149859 - AluSx SINE Alu -259 44 1 2099 113 7 3 chr1 34514511 34514812 -208149541 - AluSx SINE Alu -9 303 2 1824 104 7 7 chr1 34515745 34516015 -208148338 - AluSx SINE Alu -42 270 1 1351 180 70 0 chr1 34516301 34516401 -208147952 + AluJo SINE Alu 1 93 -219 4897 85 19 27 chr1 34516401 34517094 -208147259 + LTR8 LTR ERV1 5 691 0 1351 180 70 0 chr1 34517094 34517265 -208147088 + AluJo SINE Alu 93 291 -21 2142 102 10 0 chr1 34517265 34517559 -208146794 + AluSx SINE Alu 1 297 -15 1265 40 7 0 chr1 34517559 34517709 -208146644 - MER4E LTR ERV1 -615 151 1 609 14 0 0 chr1 34517758 34517828 -208146525 + (TTATA)n Simple_repeat Simple_repeat 3 72 0 1141 74 0 0 chr1 34517834 34517982 -208146371 - AluSg/x SINE Alu -20 292 145 1897 96 0 8 chr1 34517983 34518244 -208146109 + AluSc SINE Alu 34 292 -17 2230 86 3 0 chr1 34518473 34518765 -208145588 - AluSp SINE Alu -20 293 1 2226 98 0 0 chr1 34518839 34519134 -208145219 - AluSq SINE Alu -18 295 1 220 328 0 0 chr1 34519226 34519287 -208145066 - MIR3 SINE MIR -27 181 121 888 152 0 0 chr1 34519564 34519696 -208144657 + FLAM_C SINE Alu 2 133 0 2216 79 0 20 chr1 34519713 34520016 -208144337 + AluY SINE Alu 1 297 -14 1398 170 23 4 chr1 34520109 34520374 -208143979 - AluJb SINE Alu -6 306 37 2121 110 3 0 chr1 34520674 34520974 -208143379 - AluSg1 SINE Alu -8 301 1 379 253 86 52 chr1 34521054 34521228 -208143125 + Charlie8 DNA MER1_type 106 285 -2132 2233 107 3 3 chr1 34521630 34521940 -208142413 - AluSp SINE Alu -3 310 1 23 78 0 0 chr1 34521961 34522012 -208142341 + AT_rich Low_complexity Low_complexity 1 51 0 490 107 40 0 chr1 34522080 34522155 -208142198 + MER51A LTR ERV1 1 78 -556 1760 127 25 44 chr1 34522194 34522509 -208141844 + MER51A LTR ERV1 326 634 0 2027 128 0 3 chr1 34522561 34522858 -208141495 - AluJb SINE Alu -16 296 1 1954 129 0 10 chr1 34523208 34523510 -208140843 - AluSx SINE Alu -13 299 1 1759 160 14 7 chr1 34523817 34524105 -208140248 + AluJo SINE Alu 1 290 -22 2317 91 3 0 chr1 34524448 34524755 -208139598 + AluY SINE Alu 1 308 -3 219 330 110 10 chr1 34525475 34525575 -208138778 + MIR SINE MIR 36 145 -63 3119 124 37 8 chr1 34525576 34526067 -208138286 + L1PA15 LINE L1 5661 6165 0 779 296 182 9 chr1 34526533 34526962 -208137391 + L2 LINE L2 1079 1581 -1733 761 281 179 26 chr1 34526988 34527168 -208137185 + L2 LINE L2 2825 2976 -337 2608 106 8 19 chr1 34527168 34527545 -208136808 + THE1C LTR MaLR 1 373 -2 761 281 179 26 chr1 34527545 34527788 -208136565 + L2 LINE L2 2976 3313 0 2233 108 0 0 chr1 34527941 34528238 -208136115 + AluSx SINE Alu 1 297 -15 2117 105 10 13 chr1 34528271 34528584 -208135769 + AluSx SINE Alu 1 312 0 1882 114 40 4 chr1 34528591 34528903 -208135450 + AluSx SINE Alu 1 322 0 651 202 0 25 chr1 34528929 34529048 -208135305 + FLAM_A SINE Alu 10 125 -17 398 178 41 0 chr1 34529124 34529197 -208135156 + Tigger3(Golem) DNA MER2_type 1 76 -2953 2039 114 0 17 chr1 34529201 34529500 -208134853 - AluSg SINE Alu -14 296 3 290 73 0 0 chr1 34529960 34530001 -208134352 - MADE1 DNA Mariner -2 78 38 525 70 28 0 chr1 34530001 34530072 -208134281 + AluJ SINE Alu 63 135 -177 1323 140 45 5 chr1 34530072 34530294 -208134059 + AluJb SINE Alu 1 231 -81 888 187 27 0 chr1 34530330 34530480 -208133873 + AluJ SINE Alu 137 290 -12 2344 73 0 3 chr1 34530489 34530791 -208133562 + AluY SINE Alu 1 301 -10 804 136 8 0 chr1 34532438 34532563 -208131790 - AluSx SINE Alu -18 294 169 2177 93 3 7 chr1 34532574 34532865 -208131488 - AluSg SINE Alu -20 290 1 460 108 0 0 chr1 34532911 34532976 -208131377 - AluSx SINE Alu -16 296 232 1201 147 0 5 chr1 34532977 34533161 -208131192 - AluSx SINE Alu -124 188 6 2010 94 24 10 chr1 34533278 34533576 -208130777 + AluSp SINE Alu 1 302 -11 1637 144 52 14 chr1 34533580 34533871 -208130482 + AluJb SINE Alu 1 302 -10 2158 95 27 0 chr1 34534059 34534355 -208129998 + AluSx SINE Alu 1 304 -8 2260 76 0 3 chr1 34534356 34534647 -208129706 + AluY SINE Alu 2 291 -20 314 344 8 8 chr1 34534681 34534803 -208129550 - L3 LINE CR1 -760 817 696 2006 145 3 0 chr1 34534887 34535198 -208129155 - AluJo SINE Alu 0 312 1 2155 109 0 13 chr1 34535262 34535573 -208128780 - AluSc SINE Alu -2 307 1 2283 89 0 3 chr1 34535847 34536150 -208128203 - AluSg1 SINE Alu -7 302 1 451 228 102 36 chr1 34536464 34536532 -208127821 - MIR SINE MIR -26 236 174 2160 121 3 3 chr1 34536532 34536837 -208127516 + AluSq SINE Alu 1 305 -8 451 228 102 36 chr1 34536837 34536935 -208127418 - MIR SINE MIR -88 174 59 2023 115 3 0 chr1 34537037 34537332 -208127021 - AluSq SINE Alu -17 296 1 299 229 193 0 chr1 34537600 34537683 -208126670 - MIR SINE MIR -85 123 25 23 54 0 0 chr1 34538727 34538764 -208125589 + GC_rich Low_complexity Low_complexity 1 37 0 29 47 0 0 chr1 34538816 34538859 -208125494 + GC_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr1 34538885 34538913 -208125440 + GC_rich Low_complexity Low_complexity 1 28 0 201 284 18 9 chr1 34539827 34539936 -208124417 + (TG)n Simple_repeat Simple_repeat 1 110 0 318 231 120 46 chr1 34540451 34540547 -208123806 + L2 LINE L2 2829 2916 -356 1924 166 0 3 chr1 34540547 34540860 -208123493 - AluJo SINE Alu 0 312 1 318 231 120 46 chr1 34540860 34540979 -208123374 + L2 LINE L2 2916 3060 -212 783 135 0 45 chr1 34541040 34541173 -208123180 - FLAM_C SINE Alu -11 132 6 742 213 17 70 chr1 34541176 34541251 -208123102 + L2 LINE L2 3084 3161 -152 2333 76 0 3 chr1 34541251 34541552 -208122801 - AluY SINE Alu -11 300 1 742 213 17 70 chr1 34541552 34541706 -208122647 + L2 LINE L2 3161 3301 -12 2505 224 36 13 chr1 34541714 34542245 -208122108 - MLT1G1 LTR MaLR -50 545 3 314 207 17 0 chr1 34542381 34542439 -208121914 - MLT1J LTR MaLR -325 186 128 * 860 161 78 61 chr1 34542409 34542589 -208121764 - MER21B LTR ERV1 -335 596 329 1354 225 98 56 chr1 34543196 34543343 -208121010 + LTR33 LTR ERVL 43 182 -339 2027 131 0 34 chr1 34543343 34543663 -208120690 - AluSx SINE Alu -3 309 1 1354 225 98 56 chr1 34543663 34543964 -208120389 + LTR33 LTR ERVL 182 510 -11 839 236 23 50 chr1 34543997 34544217 -208120136 + AluJo SINE Alu 89 302 -10 1060 81 0 0 chr1 34544225 34544361 -208119992 + AluSq/x SINE Alu 1 136 -177 2297 74 3 0 chr1 34544361 34544698 -208119655 + AluY SINE Alu 1 311 0 2175 119 0 3 chr1 34544702 34545013 -208119340 + AluSq SINE Alu 1 310 -3 260 250 83 67 chr1 34545288 34545408 -208118945 + MIR SINE MIR 81 202 -60 1623 110 103 7 chr1 34545493 34545765 -208118588 - AluSq SINE Alu -15 298 1 354 156 31 0 chr1 34545863 34545927 -208118426 - AluJo SINE Alu -4 298 233 868 158 0 87 chr1 34545928 34546112 -208118241 - AluJo SINE Alu -144 168 1 343 277 27 18 chr1 34546126 34546238 -208118115 + MIR SINE MIR 39 151 -111 2384 75 3 0 chr1 34546239 34546546 -208117807 + AluSp SINE Alu 1 308 -5 556 275 5 68 chr1 34546894 34546931 -208117422 - MIR SINE MIR -15 247 209 2173 111 0 0 chr1 34546931 34547229 -208117124 - AluSx SINE Alu -12 300 3 556 275 5 68 chr1 34547229 34547398 -208116955 - MIR SINE MIR -53 209 54 235 250 0 0 chr1 34547522 34547578 -208116775 + MIR SINE MIR 60 115 -147 2541 52 0 0 chr1 34547585 34547894 -208116459 - AluY SINE Alu -2 309 1 251 237 11 75 chr1 34547971 34548064 -208116289 + MIR SINE MIR 47 133 -75 209 273 5 70 chr1 34548869 34548886 -208115467 + (CATATA)n Simple_repeat Simple_repeat 6 23 -157 1473 162 42 32 chr1 34548886 34549026 -208115327 + AluJo SINE Alu 1 138 -174 2205 88 0 7 chr1 34549026 34549323 -208115030 + AluSq SINE Alu 1 295 -18 1473 162 42 32 chr1 34549323 34549466 -208114887 + AluJo SINE Alu 138 287 -25 209 273 5 70 chr1 34549466 34549495 -208114858 + (CATATA)n Simple_repeat Simple_repeat 23 52 -128 2169 91 0 17 chr1 34549495 34549631 -208114722 + AluSp SINE Alu 2 139 -174 2447 57 0 0 chr1 34549631 34549929 -208114424 + AluY SINE Alu 1 298 -13 2169 91 0 17 chr1 34549929 34550109 -208114244 + AluSp SINE Alu 139 313 0 209 273 5 70 chr1 34550109 34550118 -208114235 + (CATATA)n Simple_repeat Simple_repeat 52 60 -120 2046 142 0 3 chr1 34550118 34550428 -208113925 + AluSg SINE Alu 1 309 -1 334 318 13 0 chr1 34550428 34550579 -208113774 + (CA)n Simple_repeat Simple_repeat 1 153 0 2028 68 82 11 chr1 34550632 34550911 -208113442 + AluY SINE Alu 1 299 -12 195 341 40 32 chr1 34551015 34551141 -208113212 - MIR SINE MIR -6 256 130 2112 90 41 3 chr1 34551279 34551569 -208112784 - AluSg SINE Alu -9 301 1 2343 75 7 0 chr1 34551569 34551874 -208112479 - AluSp SINE Alu -6 307 1 355 287 46 9 chr1 34551945 34552053 -208112300 - MIR SINE MIR -81 127 16 1358 143 0 18 chr1 34552368 34552592 -208111761 - AluJb SINE Alu -8 304 85 487 236 49 21 chr1 34553410 34553554 -208110799 - MIR SINE MIR -51 211 64 323 321 22 92 chr1 34553724 34553838 -208110515 + L2 LINE L2 2968 3088 -184 2295 82 3 3 chr1 34553838 34554143 -208110210 - AluSp SINE Alu -8 305 1 323 321 22 92 chr1 34554143 34554299 -208110054 + L2 LINE L2 3088 3219 -53 560 296 155 5 chr1 34554551 34554757 -208109596 - MIR SINE MIR -25 237 1 2263 89 0 7 chr1 34554780 34555083 -208109270 + AluSq SINE Alu 1 301 -12 2764 13 0 0 chr1 34555083 34555394 -208108959 + AluYa5 SINE Alu 1 311 0 1914 122 7 4 chr1 34555440 34555749 -208108604 + AluSg SINE Alu 2 311 0 2395 69 0 0 chr1 34555749 34556053 -208108300 + AluY SINE Alu 1 304 -7 2092 101 18 0 chr1 34556169 34556455 -208107898 + AluSx SINE Alu 2 292 -20 289 288 171 0 chr1 34557244 34557355 -208106998 - MIR SINE MIR -52 210 81 212 179 0 0 chr1 34557797 34557836 -208106517 + MIR SINE MIR 76 114 -94 2257 89 3 0 chr1 34557920 34558213 -208106140 - AluSg1 SINE Alu -13 296 3 1435 165 25 79 chr1 34558215 34558373 -208105980 - AluSq SINE Alu -14 299 165 1977 106 30 20 chr1 34558373 34558675 -208105678 - AluSp SINE Alu -8 305 1 1435 165 25 79 chr1 34558675 34558832 -208105521 - AluSq SINE Alu -148 165 1 1106 115 0 0 chr1 34558918 34559075 -208105278 - AluSg/x SINE Alu 0 312 156 1491 178 6 62 chr1 34559140 34559323 -208105030 - AluJb SINE Alu 0 312 120 309 51 0 0 chr1 34559323 34559362 -208104991 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2371 65 0 0 chr1 34559362 34559653 -208104700 - AluY SINE Alu -20 291 1 1491 178 6 62 chr1 34559653 34559788 -208104565 - AluJb SINE Alu -190 122 11 585 172 0 28 chr1 34559815 34559960 -208104393 + CT-rich Low_complexity Low_complexity 4 144 0 841 165 82 6 chr1 34559981 34560139 -208104214 - FRAM SINE Alu -1 175 6 252 188 21 0 chr1 34560261 34560309 -208104044 + MIR3 SINE MIR 109 157 -51 291 293 13 0 chr1 34560365 34560440 -208103913 + MER117 DNA MER1_type 96 171 -26 1413 177 71 3 chr1 34560960 34561243 -208103110 + AluSx SINE Alu 1 302 0 412 260 10 10 chr1 34564243 34564343 -208100010 + MIR SINE MIR 19 118 -144 1878 138 10 3 chr1 34564515 34564811 -208099542 + AluJb SINE Alu 2 299 -13 226 254 56 0 chr1 34564836 34564907 -208099446 + MIR3 SINE MIR 89 163 -45 192 307 61 35 chr1 34565810 34565924 -208098429 + MIR3 SINE MIR 14 130 -78 513 252 56 0 chr1 34566089 34566232 -208098121 + MIR SINE MIR 61 211 -51 189 0 0 0 chr1 34566414 34566435 -208097918 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 2355 57 27 0 chr1 34566833 34567129 -208097224 + AluSp SINE Alu 3 306 -7 2213 85 10 0 chr1 34567129 34567422 -208096931 + AluSq SINE Alu 1 296 -17 2108 121 3 0 chr1 34567432 34567730 -208096623 + AluSq SINE Alu 2 300 -13 221 184 20 0 chr1 34567856 34567905 -208096448 + (TG)n Simple_repeat Simple_repeat 1 50 0 1769 103 0 129 chr1 34568106 34568447 -208095906 + AluSx SINE Alu 2 298 -14 2226 69 0 28 chr1 34568448 34568767 -208095586 + AluY SINE Alu 1 310 -1 321 264 124 47 chr1 34568798 34568927 -208095426 - L2 LINE L2 -220 3052 2914 2288 68 0 19 chr1 34569377 34569685 -208094668 + AluY SINE Alu 1 302 -9 24 32 0 0 chr1 34569967 34569998 -208094355 + GC_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr1 34570007 34570042 -208094311 + GC_rich Low_complexity Low_complexity 1 35 0 257 333 155 46 chr1 34570196 34570303 -208094050 - MIR SINE MIR -10 252 158 2290 97 0 0 chr1 34570303 34570603 -208093750 + AluSx SINE Alu 1 300 -12 2379 79 0 0 chr1 34570605 34570909 -208093444 + AluY SINE Alu 1 304 -7 257 333 155 46 chr1 34570909 34570972 -208093381 - MIR SINE MIR -104 158 60 556 275 5 68 chr1 34571096 34571265 -208093088 + MIR SINE MIR 54 209 -53 2209 110 0 0 chr1 34571265 34571566 -208092787 + AluSx SINE Alu 3 303 -9 556 275 5 68 chr1 34571566 34571603 -208092750 + MIR SINE MIR 209 247 -15 2516 75 3 0 chr1 34571951 34572258 -208092095 - AluSp SINE Alu -5 308 1 364 228 29 28 chr1 34572259 34572371 -208091982 - MIR SINE MIR -63 145 39 348 141 8 67 chr1 34572384 34572633 -208091720 + AluJo SINE Alu 1 298 -4 1731 110 103 7 chr1 34572731 34573003 -208091350 + AluSq SINE Alu 1 298 -15 338 217 83 67 chr1 34573088 34573208 -208091145 - MIR SINE MIR -60 202 81 2383 113 0 0 chr1 34573483 34573793 -208090560 - AluSq SINE Alu -3 310 1 2441 64 3 0 chr1 34573797 34574132 -208090221 - AluY SINE Alu 0 311 1 1116 81 0 0 chr1 34574132 34574268 -208090085 - AluSq/x SINE Alu -177 136 1 801 200 0 44 chr1 34574290 34574450 -208089903 - FRAM SINE Alu -24 152 1 1229 217 101 58 chr1 34574529 34574830 -208089523 - LTR33 LTR ERVL -11 510 183 2160 128 0 34 chr1 34574830 34575150 -208089203 + AluSx SINE Alu 1 309 -3 1229 217 101 58 chr1 34575150 34575282 -208089071 - LTR33 LTR ERVL -338 183 58 856 156 78 61 chr1 34575904 34576084 -208088269 + MER21B LTR ERV1 329 596 -335 319 190 17 0 chr1 34576054 34576112 -208088241 + MLT1J LTR MaLR 128 186 -325 * 2394 226 36 13 chr1 34576248 34576779 -208087574 + MLT1G1 LTR MaLR 3 545 -50 790 209 17 70 chr1 34576787 34576941 -208087412 - L2 LINE L2 -12 3301 3161 2460 76 0 3 chr1 34576941 34577242 -208087111 + AluY SINE Alu 1 300 -11 790 209 17 70 chr1 34577242 34577317 -208087036 - L2 LINE L2 -152 3161 3084 784 161 0 0 chr1 34577320 34577438 -208086915 + FLAM_C SINE Alu 6 123 -20 250 237 0 17 chr1 34577509 34577568 -208086785 + AluSp/q SINE Alu 230 287 -16 2364 88 3 0 chr1 34578113 34578407 -208085946 - AluSp SINE Alu -18 295 1 2370 98 0 0 chr1 34578481 34578776 -208085577 - AluSq SINE Alu -18 295 1 221 328 0 0 chr1 34578868 34578929 -208085424 - MIR3 SINE MIR -27 181 121 906 152 0 0 chr1 34579206 34579338 -208085015 + FLAM_C SINE Alu 2 133 0 2347 80 0 20 chr1 34579355 34579657 -208084696 + AluY SINE Alu 1 296 -15 1543 171 19 4 chr1 34579750 34580013 -208084340 - AluJb SINE Alu -7 305 39 2271 110 3 0 chr1 34580314 34580614 -208083739 - AluSg1 SINE Alu -8 301 1 333 249 112 16 chr1 34580694 34580868 -208083485 + Charlie8 DNA MER1_type 95 285 -2132 2340 110 3 3 chr1 34581270 34581580 -208082773 - AluSp SINE Alu -3 310 1 23 78 0 0 chr1 34581601 34581652 -208082701 + AT_rich Low_complexity Low_complexity 1 51 0 481 107 40 0 chr1 34581720 34581795 -208082558 + MER51A LTR ERV1 1 78 -556 1642 138 29 45 chr1 34581836 34582148 -208082205 + MER51A LTR ERV1 328 634 0 2148 128 0 3 chr1 34582200 34582497 -208081856 - AluJb SINE Alu -16 296 1 2074 129 0 10 chr1 34582847 34583149 -208081204 - AluSx SINE Alu -13 299 1 1879 160 14 7 chr1 34583456 34583744 -208080609 + AluJo SINE Alu 1 290 -22 2457 88 3 0 chr1 34584085 34584392 -208079961 + AluY SINE Alu 1 308 -3 236 330 110 10 chr1 34585112 34585212 -208079141 + MIR SINE MIR 36 145 -63 3071 124 37 8 chr1 34585213 34585704 -208078649 + L1PA15 LINE L1 5661 6165 0 195 203 0 102 chr1 34586008 34586067 -208078286 + MIR3 SINE MIR 152 204 -4 867 296 182 9 chr1 34586169 34586598 -208077755 + L2 LINE L2 1079 1581 -1733 852 276 179 26 chr1 34586624 34586804 -208077549 + L2 LINE L2 2825 2976 -337 2576 106 8 19 chr1 34586804 34587181 -208077172 + THE1C LTR MaLR 1 373 -2 852 276 179 26 chr1 34587181 34587424 -208076929 + L2 LINE L2 2976 3313 0 2383 102 0 0 chr1 34587577 34587872 -208076481 + AluSx SINE Alu 1 295 -17 2254 98 9 22 chr1 34587907 34588222 -208076131 + AluSx SINE Alu 1 311 -1 1999 114 40 4 chr1 34588227 34588544 -208075809 + AluSx SINE Alu 1 327 0 663 193 0 25 chr1 34588570 34588689 -208075664 + FLAM_A SINE Alu 10 125 -17 398 204 36 16 chr1 34588765 34588841 -208075512 + Tigger3(Golem) DNA MER2_type 1 74 -2964 2375 80 7 7 chr1 34588841 34589141 -208075212 - AluSq SINE Alu -13 300 1 398 204 36 16 chr1 34589141 34589180 -208075173 + Tigger3(Golem) DNA MER2_type 74 2804 -234 1523 191 16 44 chr1 34589197 34589516 -208074837 + AluJo SINE Alu 3 312 0 1175 143 85 98 chr1 34589537 34589576 -208074777 + AluJb SINE Alu 9 47 -265 4447 50 7 4 chr1 34589576 34590132 -208074221 + LTR6B LTR ERV1 1 558 0 1175 143 85 98 chr1 34590132 34590247 -208074106 + AluJb SINE Alu 47 162 -150 2081 91 0 4 chr1 34590247 34590512 -208073841 + AluSg SINE Alu 1 264 -46 1175 143 85 98 chr1 34590512 34590663 -208073690 + AluJb SINE Alu 162 311 -1 2295 106 0 7 chr1 34590668 34590971 -208073382 + AluSp SINE Alu 1 301 -12 2196 109 3 3 chr1 34590971 34591264 -208073089 + AluSx SINE Alu 1 293 -19 2324 116 0 3 chr1 34591273 34591583 -208072770 + AluSg SINE Alu 1 309 -1 454 209 22 0 chr1 34591775 34591866 -208072487 + HY4 scRNA scRNA 1 93 0 752 52 0 21 chr1 34591866 34591962 -208072391 + AluY SINE Alu 70 163 -148 2388 65 0 7 chr1 34592161 34592453 -208071900 - AluSc SINE Alu -19 290 1 2143 116 3 3 chr1 34592462 34592755 -208071598 - AluSx SINE Alu -19 293 1 2295 106 0 7 chr1 34592755 34593058 -208071295 - AluSp SINE Alu -12 301 1 1135 150 85 98 chr1 34593063 34593214 -208071139 - AluJb SINE Alu -1 311 160 2081 91 0 4 chr1 34593214 34593479 -208070874 - AluSg SINE Alu -46 264 1 1135 150 85 98 chr1 34593479 34593594 -208070759 - AluJb SINE Alu -152 160 47 4447 50 7 4 chr1 34593594 34594150 -208070203 - LTR6B LTR ERV1 0 558 1 1135 150 85 98 chr1 34594150 34594189 -208070164 - AluJb SINE Alu -265 47 9 1525 187 16 44 chr1 34594213 34594528 -208069825 - AluJo SINE Alu -4 308 3 30 0 0 0 chr1 34594551 34594581 -208069772 + AT_rich Low_complexity Low_complexity 1 30 0 2402 83 0 0 chr1 34594584 34594874 -208069479 + AluSc SINE Alu 1 290 -19 1624 189 0 14 chr1 34594901 34595186 -208069167 + AluJo SINE Alu 1 281 -31 342 150 0 50 chr1 34595236 34595316 -208069037 - AluJ/FRAM SINE Alu 0 302 227 684 161 0 73 chr1 34595332 34595469 -208068884 - FRAM SINE Alu -38 138 12 788 188 32 0 chr1 34595469 34595623 -208068730 - Charlie1a DNA MER1_type -1291 164 6 318 235 141 0 chr1 34595628 34595713 -208068640 + L1ME3A LINE L1 6065 6161 -9 1989 148 10 10 chr1 34595723 34596020 -208068333 + AluSx SINE Alu 1 297 -15 2138 58 0 4 chr1 34596064 34596322 -208068031 - AluY SINE Alu -4 307 51 2332 104 0 16 chr1 34596438 34596755 -208067598 + AluSx SINE Alu 1 312 0 1248 81 11 75 chr1 34596762 34596948 -208067405 + AluSp SINE Alu 2 175 -138 969 223 0 0 chr1 34596970 34597136 -208067217 + FRAM SINE Alu 1 166 0 3236 123 64 10 chr1 34597156 34597654 -208066699 + MER1A DNA MER1_type 3 527 0 888 264 79 58 chr1 34597717 34598199 -208066154 + L1MC/D LINE L1 5296 5787 -2021 2349 81 0 17 chr1 34598346 34598642 -208065711 - AluSx SINE Alu -21 291 1 2376 89 7 3 chr1 34598642 34598945 -208065408 - AluSx SINE Alu -8 304 1 220 242 0 61 chr1 34599173 34599239 -208065114 - MIR SINE MIR -86 122 61 449 103 0 29 chr1 34599241 34599309 -208065044 + AluJ/FRAM SINE Alu 220 285 -27 306 0 0 0 chr1 34599309 34599343 -208065010 + (CA)n Simple_repeat Simple_repeat 2 35 0 2485 51 10 0 chr1 34599343 34599637 -208064716 - AluSp SINE Alu -16 297 1 591 180 63 0 chr1 34602044 34602155 -208062198 + AluJb SINE Alu 2 119 -193 2216 95 0 16 chr1 34602214 34602519 -208061834 - AluSx SINE Alu -12 300 1 203 354 31 0 chr1 34602553 34602618 -208061735 - L2 LINE L2 -89 3183 3117 2551 65 3 0 chr1 34603317 34603627 -208060726 - AluY SINE Alu 0 311 1 1793 151 0 17 chr1 34603760 34604059 -208060294 + AluJb SINE Alu 1 294 -18 2279 101 0 25 chr1 34604347 34604664 -208059689 - AluSq SINE Alu -4 309 1 1642 163 58 11 chr1 34604669 34604946 -208059407 - AluJo SINE Alu -22 290 1 751 239 25 6 chr1 34605525 34605688 -208058665 - MER5A DNA MER1_type 0 189 24 234 289 10 45 chr1 34605778 34605845 -208058508 + MIR SINE MIR 36 107 -102 1024 121 0 42 chr1 34605847 34606013 -208058340 - AluSx SINE Alu 0 312 154 2279 114 3 0 chr1 34606016 34606322 -208058031 - AluSx SINE Alu -5 307 1 208 280 0 27 chr1 34606433 34606508 -208057845 + T-rich Low_complexity Low_complexity 2 74 0 684 185 0 0 chr1 34606664 34606783 -208057570 + AluSq/x SINE Alu 2 120 -193 1140 104 0 0 chr1 34607015 34607159 -208057194 - AluSx SINE Alu -168 144 1 1586 112 50 8 chr1 34607159 34607418 -208056935 + Tigger3(Golem) DNA MER2_type 2760 3029 0 1198 194 49 74 chr1 34607440 34607524 -208056829 + MER58B DNA MER1_type 1 86 -2334 2271 119 3 0 chr1 34607524 34607835 -208056518 - AluSx SINE Alu 0 312 1 1198 194 49 74 chr1 34607835 34608100 -208056253 + MER58B DNA MER1_type 86 341 0 266 309 111 6 chr1 34608152 34608314 -208056039 - MIR3 SINE MIR 0 208 30 1715 159 10 34 chr1 34608741 34609037 -208055316 + AluJo SINE Alu 1 289 -23 2138 111 3 41 chr1 34609049 34609364 -208054989 + AluSx SINE Alu 1 303 -9 2184 107 10 0 chr1 34609927 34610216 -208054137 - AluSx SINE Alu -16 296 5 521 200 96 78 chr1 34610228 34610458 -208053895 + MER106A DNA MER1_type 2 235 -1 1976 102 0 4 chr1 34610614 34610868 -208053485 - AluSx SINE Alu -10 302 50 408 277 31 0 chr1 34610926 34611085 -208053268 + (TA)n Simple_repeat Simple_repeat 1 164 0 318 319 35 26 chr1 34611094 34611210 -208053143 + L1MC4 LINE L1 6593 6709 -1333 210 288 25 0 chr1 34611210 34611290 -208053063 + (TA)n Simple_repeat Simple_repeat 1 82 0 2131 119 3 16 chr1 34611346 34611649 -208052704 + AluSq SINE Alu 1 299 -14 186 227 68 0 chr1 34611724 34611768 -208052585 - L2 LINE L2 -2 3311 3265 245 270 212 0 chr1 34611794 34611931 -208052422 - L1MC/D LINE L1 -1922 5886 5721 353 283 87 14 chr1 34611968 34612106 -208052247 - L1MC/D LINE L1 -484 5637 5490 776 212 34 0 chr1 34612324 34612470 -208051883 - AluJo/FRAM SINE Alu -14 288 138 1375 138 28 36 chr1 34612471 34612756 -208051597 - AluSx SINE Alu 0 312 40 1685 192 0 13 chr1 34612890 34613192 -208051161 - AluJb SINE Alu -14 298 1 2546 117 26 20 chr1 34613199 34613370 -208050983 - L1P4 LINE L1 -391 5775 5607 2156 116 26 0 chr1 34613370 34613673 -208050680 - AluSp SINE Alu -2 311 1 2546 117 26 20 chr1 34613673 34613956 -208050397 - L1P4 LINE L1 -559 5607 5318 2268 112 7 0 chr1 34613956 34614261 -208050092 - AluSc SINE Alu 0 309 3 1092 112 39 22 chr1 34614264 34614443 -208049910 - AluSg/x SINE Alu 0 312 131 216 0 0 0 chr1 34614443 34614467 -208049886 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2274 95 11 0 chr1 34614468 34614753 -208049600 - AluSq SINE Alu -25 288 1 1323 52 0 0 chr1 34614900 34615054 -208049299 + AluSp/q SINE Alu 156 309 -4 1991 199 42 58 chr1 34615064 34615522 -208048831 - L1ME1 LINE L1 -132 6034 5585 2504 59 23 0 chr1 34615522 34615826 -208048527 + AluY SINE Alu 1 311 0 1991 199 42 58 chr1 34615826 34615940 -208048413 - L1ME1 LINE L1 -581 5585 5471 2602 140 26 84 chr1 34615954 34616023 -208048330 - L1MB3 LINE L1 -2 6181 6110 2468 87 0 0 chr1 34616023 34616321 -208048032 + AluSq SINE Alu 1 298 -15 2602 140 26 84 chr1 34616321 34616422 -208047931 - L1MB3 LINE L1 -73 6110 6005 657 231 8 8 chr1 34616422 34616552 -208047801 - FLAM_A SINE Alu 0 133 4 2602 140 26 84 chr1 34616552 34616986 -208047367 - L1MB3 LINE L1 -178 6005 5611 1394 204 74 11 chr1 34616986 34617270 -208047083 - AluJo SINE Alu -8 304 3 1153 164 29 24 chr1 34617274 34617441 -208046912 - AluJb SINE Alu -6 306 136 2312 117 0 3 chr1 34617441 34617748 -208046605 - AluSx SINE Alu -6 306 1 1153 164 29 24 chr1 34617748 34617788 -208046565 - AluJb SINE Alu -176 136 98 1642 129 0 4 chr1 34617808 34618040 -208046313 - AluSg/x SINE Alu -2 310 80 1629 96 9 0 chr1 34618140 34618358 -208045995 + AluSg/x SINE Alu 90 309 -3 417 220 60 0 chr1 34618360 34618460 -208045893 + MIR SINE MIR 157 262 0 21 36 0 0 chr1 34618866 34618894 -208045459 + GC_rich Low_complexity Low_complexity 1 28 0 214 242 15 15 chr1 34619728 34619794 -208044559 + C-rich Low_complexity Low_complexity 6 71 0 266 283 59 86 chr1 34620278 34620465 -208043888 + MIR3 SINE MIR 7 188 -20 279 204 56 0 chr1 34620469 34620523 -208043830 - MIR SINE MIR -65 143 87 1808 152 9 47 chr1 34621212 34621534 -208042819 + AluJb SINE Alu 1 310 -2 2286 120 0 0 chr1 34621536 34621835 -208042518 + AluSq SINE Alu 1 299 -14 213 292 54 77 chr1 34622108 34622406 -208041947 - L2 LINE L2 -556 2758 2468 648 268 31 36 chr1 34622482 34622676 -208041677 - MIR SINE MIR -55 207 15 185 200 0 0 chr1 34623175 34623210 -208041143 - MIR SINE MIR -110 152 118 386 298 28 14 chr1 34623560 34623701 -208040652 - MIR3 SINE MIR -30 178 36 348 222 61 10 chr1 34623899 34623998 -208040355 + MIR SINE MIR 7 110 -152 310 273 223 7 chr1 34624033 34624174 -208040179 - MIR SINE MIR -63 145 15 299 292 35 58 chr1 34624642 34624813 -208039540 + MIR SINE MIR 58 224 -38 2344 97 0 0 chr1 34625438 34625738 -208038615 - AluSg SINE Alu -10 300 1 184 280 0 0 chr1 34626043 34626093 -208038260 + MIR SINE MIR 84 133 -75 223 307 148 11 chr1 34626528 34626616 -208037737 + L2 LINE L2 3156 3255 -17 377 269 51 69 chr1 34626786 34626961 -208037392 + MIR SINE MIR 7 178 -84 651 159 0 0 chr1 34627302 34627415 -208036938 - FRAM SINE Alu -2 174 62 2337 92 0 13 chr1 34627433 34627737 -208036616 - AluSg SINE Alu -10 300 1 586 113 0 0 chr1 34627738 34627818 -208036535 - AluS SINE Alu -227 86 7 2295 115 0 10 chr1 34627828 34628133 -208036220 - AluSx SINE Alu -10 302 1 618 234 78 6 chr1 34628161 34628408 -208035945 + L2 LINE L2 2774 3036 -277 2416 90 7 7 chr1 34628413 34628723 -208035630 - AluSx SINE Alu -2 310 1 1526 192 4 4 chr1 34628744 34629010 -208035343 - AluJb SINE Alu -46 266 1 325 221 48 58 chr1 34629140 34629244 -208035109 - L2 LINE L2 0 3313 3211 2217 115 0 16 chr1 34629310 34629614 -208034739 - AluSx SINE Alu -5 307 9 309 242 39 112 chr1 34631235 34631413 -208032940 + MIR3 SINE MIR 24 188 -20 186 103 0 0 chr1 34632817 34632846 -208031507 + (TCCCC)n Simple_repeat Simple_repeat 2 30 0 234 267 103 35 chr1 34632990 34633106 -208031247 + MIR3 SINE MIR 58 181 -27 1923 135 35 3 chr1 34633164 34633446 -208030907 + AluSq SINE Alu 1 291 -22 2511 63 0 13 chr1 34633821 34634124 -208030229 + AluY SINE Alu 1 299 -12 319 255 112 58 chr1 34634124 34634326 -208030027 + MIR SINE MIR 37 262 0 319 194 45 0 chr1 34634360 34634427 -208029926 - MER103 DNA DNA -94 72 3 21 57 0 0 chr1 34639679 34639714 -208024639 + AT_rich Low_complexity Low_complexity 1 35 0 2317 82 3 17 chr1 34641005 34641299 -208023054 - AluSp SINE Alu -23 290 1 356 275 124 43 chr1 34641304 34641537 -208022816 + L1ME LINE L1 5521 5772 -349 2231 107 0 3 chr1 34641538 34641829 -208022524 + AluY SINE Alu 2 291 -20 2254 125 3 0 chr1 34641885 34642180 -208022173 - AluSp SINE Alu -16 297 2 2364 82 10 0 chr1 34642190 34642483 -208021870 - AluSq SINE Alu -17 296 1 2337 77 7 16 chr1 34642483 34642793 -208021560 - AluSq SINE Alu -6 307 1 2505 74 3 0 chr1 34643594 34643904 -208020449 - AluY SINE Alu 0 311 1 1810 151 0 17 chr1 34644037 34644336 -208020017 + AluJb SINE Alu 1 294 -18 2292 101 0 25 chr1 34644624 34644941 -208019412 - AluSq SINE Alu -4 309 1 1653 163 58 11 chr1 34644946 34645223 -208019130 - AluJo SINE Alu -22 290 1 701 239 25 6 chr1 34645802 34645965 -208018388 - MER5A DNA MER1_type 0 189 24 219 283 0 50 chr1 34646062 34646122 -208018231 + MIR SINE MIR 51 107 -155 1024 121 0 42 chr1 34646124 34646290 -208018063 - AluSg/x SINE Alu 0 310 152 2282 115 3 0 chr1 34646293 34646598 -208017755 - AluSx SINE Alu -6 306 1 208 280 0 27 chr1 34646710 34646785 -208017568 + T-rich Low_complexity Low_complexity 2 74 0 2081 152 0 0 chr1 34646940 34647243 -208017110 + AluSx SINE Alu 1 303 -9 2140 118 10 0 chr1 34647806 34648095 -208016258 - AluSx SINE Alu -16 296 5 466 200 96 78 chr1 34648107 34648337 -208016016 + MER106A DNA MER1_type 2 235 -1 1985 102 0 4 chr1 34648493 34648747 -208015606 - AluSx SINE Alu -10 302 50 390 280 32 0 chr1 34648805 34648962 -208015391 + (TA)n Simple_repeat Simple_repeat 1 162 0 300 280 54 32 chr1 34648990 34649083 -208015270 + L1MC4 LINE L1 6615 6709 -1333 210 288 25 0 chr1 34649083 34649163 -208015190 + (TA)n Simple_repeat Simple_repeat 1 82 0 2156 120 3 16 chr1 34649219 34649527 -208014826 + AluSq SINE Alu 1 304 -9 255 270 212 0 chr1 34649672 34649809 -208014544 - L1MC/D LINE L1 -1922 5886 5721 371 290 85 14 chr1 34649829 34649984 -208014369 - L1MC/D LINE L1 -484 5637 5490 715 212 34 0 chr1 34650202 34650348 -208014005 - AluJo/FRAM SINE Alu -14 288 138 1384 137 28 39 chr1 34650349 34650636 -208013717 - AluSx SINE Alu 0 312 40 1698 192 0 13 chr1 34650770 34651072 -208013281 - AluJb SINE Alu -14 298 1 2478 128 26 20 chr1 34651079 34651250 -208013103 - L1P4 LINE L1 -391 5775 5607 2090 119 26 3 chr1 34651250 34651553 -208012800 - AluSp SINE Alu -3 310 1 2478 128 26 20 chr1 34651553 34651835 -208012518 - L1P4 LINE L1 -559 5607 5319 2273 112 7 0 chr1 34651835 34652140 -208012213 - AluSc SINE Alu 0 309 3 2009 130 23 13 chr1 34652143 34652450 -208011903 - AluSg SINE Alu 0 310 1 2204 114 16 3 chr1 34652578 34652884 -208011469 - AluSx SINE Alu -2 310 1 269 153 153 0 chr1 34653122 34653194 -208011159 + MIR3 SINE MIR 101 183 -25 189 192 0 77 chr1 34653265 34653317 -208011036 + MIR SINE MIR 92 139 -69 22 70 0 0 chr1 34655584 34655627 -208008726 + GC_rich Low_complexity Low_complexity 1 43 0 37 109 0 0 chr1 34655704 34655860 -208008493 + GC_rich Low_complexity Low_complexity 1 156 0 282 209 23 39 chr1 34655870 34655999 -208008354 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 2259 113 0 0 chr1 34657511 34657812 -208006541 + AluSx SINE Alu 2 302 -10 1245 165 3 123 chr1 34657815 34658149 -208006204 + AluSx SINE Alu 2 295 -7 2194 98 0 20 chr1 34658149 34658285 -208006068 + AluSg1 SINE Alu 1 138 -171 2434 92 3 0 chr1 34658285 34658590 -208005763 + AluSp SINE Alu 1 306 -7 2194 98 0 20 chr1 34658590 34658749 -208005604 + AluSg1 SINE Alu 138 290 -19 430 272 11 0 chr1 34658751 34658843 -208005510 - MER45 DNA AcHobo -947 93 1 1070 93 0 0 chr1 34660125 34660264 -208004089 + AluSc SINE Alu 162 300 -9 2506 77 0 6 chr1 34660293 34660605 -208003748 - AluY SINE Alu -1 310 1 2087 129 3 7 chr1 34660606 34660900 -208003453 - AluSg1 SINE Alu -16 293 1 2361 80 3 0 chr1 34660977 34661266 -208003087 + AluSg SINE Alu 1 290 -20 2220 118 0 0 chr1 34661328 34661615 -208002738 + AluSg SINE Alu 1 287 -23 2226 99 7 0 chr1 34661622 34661948 -208002405 + AluSp SINE Alu 1 328 0 1085 269 134 31 chr1 34662623 34662704 -208001649 + L1MCa LINE L1 875 946 -5661 2298 78 35 0 chr1 34662704 34663025 -208001328 + AluY SINE Alu 1 311 0 1085 269 134 31 chr1 34663025 34663456 -208000897 + L1MCa LINE L1 946 1331 -5276 1710 178 24 10 chr1 34663456 34663754 -208000599 + AluJb SINE Alu 1 302 -10 1085 269 134 31 chr1 34663754 34664141 -208000212 + L1MCa LINE L1 1331 2033 -4574 2232 116 0 0 chr1 34664163 34664464 -207999889 + AluSx SINE Alu 1 301 -11 1953 151 0 0 chr1 34664484 34664762 -207999591 - AluSx SINE Alu -11 301 24 1233 102 11 27 chr1 34664863 34665049 -207999304 + AluSg/x SINE Alu 128 310 0 29 0 0 0 chr1 34665072 34665101 -207999252 + AT_rich Low_complexity Low_complexity 1 29 0 517 214 129 28 chr1 34665154 34665332 -207999021 + L1ME3 LINE L1 5958 6153 -9 580 129 0 0 chr1 34665484 34665569 -207998784 - AluJb SINE Alu -24 288 204 2434 78 0 0 chr1 34665615 34665909 -207998444 - AluY SINE Alu -17 294 1 1926 55 0 47 chr1 34665938 34666192 -207998161 - AluY SINE Alu -1 310 69 417 211 22 0 chr1 34666192 34666282 -207998071 - HY4 scRNA scRNA -1 92 1 2315 126 0 0 chr1 34666474 34666783 -207997570 - AluSg SINE Alu -1 309 1 672 81 0 0 chr1 34666912 34667011 -207997342 - Tigger1 DNA MER2_type -111 2307 2209 435 224 78 0 chr1 34667029 34667145 -207997208 - Tigger1 DNA MER2_type -2268 150 26 2212 133 0 0 chr1 34667428 34667729 -207996624 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr1 34667755 34667776 -207996577 + AT_rich Low_complexity Low_complexity 1 21 0 241 322 70 35 chr1 34667786 34667901 -207996452 - MIR SINE MIR -56 152 34 2374 81 10 3 chr1 34668392 34668689 -207995664 - AluSx SINE Alu -13 299 1 3765 178 42 55 chr1 34668720 34669686 -207994667 + LTR13 LTR ERVK 1 954 0 1652 193 52 0 chr1 34669731 34670058 -207994295 + MER2 DNA MER2_type 1 344 0 2253 120 0 3 chr1 34671642 34671943 -207992410 + AluSg SINE Alu 2 301 -9 631 175 0 0 chr1 34672106 34672203 -207992150 + AluS SINE Alu 2 98 -215 672 30 160 0 chr1 34672401 34672501 -207991852 - MER85 DNA T2_type 0 139 24 1160 140 0 11 chr1 34672590 34672768 -207991585 - AluSp SINE Alu -1 312 137 1873 116 0 0 chr1 34673334 34673576 -207990777 + AluSg SINE Alu 1 242 -68 347 225 101 0 chr1 34673602 34673616 -207990737 + AluJo SINE Alu 121 143 -159 550 198 63 18 chr1 34673616 34673727 -207990626 + FLAM_A SINE Alu 1 116 -17 1292 130 5 5 chr1 34673749 34673934 -207990419 + AluSg/x SINE Alu 106 290 -22 2113 92 61 3 chr1 34674022 34674317 -207990036 - AluSx SINE Alu 0 312 1 22 56 0 0 chr1 34674383 34674419 -207989934 + AT_rich Low_complexity Low_complexity 1 36 0 2129 126 7 7 chr1 34675467 34675768 -207988585 - AluSg SINE Alu -9 301 1 2338 72 0 10 chr1 34675849 34676141 -207988212 + AluY SINE Alu 1 289 -22 607 144 42 17 chr1 34676157 34676275 -207988078 + L1MB3 LINE L1 6056 6176 -7 1428 171 33 22 chr1 34676285 34676559 -207987794 - AluJo SINE Alu -31 281 5 2126 125 0 34 chr1 34676747 34677067 -207987286 - AluSg SINE Alu 0 310 2 2265 94 0 13 chr1 34677068 34677366 -207986987 - AluSq SINE Alu -19 294 1 22 0 0 0 chr1 34677660 34677682 -207986671 + AT_rich Low_complexity Low_complexity 1 22 0 1961 167 3 0 chr1 34678190 34678501 -207985852 - AluJo SINE Alu 0 312 1 2098 123 19 7 chr1 34678538 34678846 -207985507 - AluSx SINE Alu 0 312 1 883 94 11 171 chr1 34678892 34678999 -207985354 - AluJo SINE Alu -89 223 101 198 0 0 0 chr1 34678999 34679021 -207985332 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 1510 139 19 104 chr1 34679021 34679330 -207985023 - AluJo SINE Alu -29 283 1 883 94 11 171 chr1 34679330 34679402 -207984951 - AluJo SINE Alu -209 103 72 195 69 0 0 chr1 34679473 34679502 -207984851 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2394 102 0 0 chr1 34679525 34679830 -207984523 + AluSc SINE Alu 2 306 -3 1991 164 0 16 chr1 34680127 34680444 -207983909 - AluJo SINE Alu 0 312 1 1778 161 31 3 chr1 34680618 34680910 -207983443 - AluSg SINE Alu -10 300 1 2587 47 0 0 chr1 34680922 34681218 -207983135 - AluY SINE Alu -15 296 1 266 204 21 86 chr1 34681295 34681388 -207982965 + MIR SINE MIR 47 133 -75 1567 162 42 32 chr1 34682210 34682350 -207982003 + AluJo SINE Alu 1 138 -174 2330 88 0 7 chr1 34682350 34682647 -207981706 + AluSq SINE Alu 1 295 -18 1567 162 42 32 chr1 34682647 34682790 -207981563 + AluJo SINE Alu 138 287 -25 2225 115 0 16 chr1 34682819 34682955 -207981398 + AluSx SINE Alu 2 139 -173 2578 57 0 0 chr1 34682955 34683253 -207981100 + AluY SINE Alu 1 298 -13 2225 115 0 16 chr1 34683253 34683421 -207980932 + AluSx SINE Alu 139 301 -11 21 0 0 0 chr1 34683447 34683468 -207980885 + AT_rich Low_complexity Low_complexity 1 21 0 262 312 47 44 chr1 34683478 34683622 -207980731 - MIR SINE MIR -56 152 8 2377 77 10 3 chr1 34684084 34684381 -207979972 - AluSx SINE Alu -13 299 1 4096 177 42 55 chr1 34684412 34685378 -207978975 + LTR13 LTR ERVK 1 954 0 1761 193 52 0 chr1 34685423 34685750 -207978603 + MER2 DNA MER2_type 1 344 0 2515 69 0 3 chr1 34687334 34687637 -207976716 + AluY SINE Alu 2 303 -8 677 175 0 0 chr1 34687800 34687897 -207976456 + AluS SINE Alu 2 98 -215 675 30 160 0 chr1 34688095 34688195 -207976158 - MER85 DNA T2_type 0 139 24 1176 147 0 0 chr1 34688284 34688461 -207975892 - AluSp SINE Alu 0 313 137 1760 132 0 0 chr1 34689027 34689269 -207975084 + AluSg SINE Alu 1 242 -68 1171 189 28 119 chr1 34689309 34689627 -207974726 + AluJb SINE Alu 2 290 -12 2594 58 0 10 chr1 34691378 34691687 -207972666 + AluY SINE Alu 2 307 -4 1367 183 17 0 chr1 34691698 34691933 -207972420 + AluJb SINE Alu 1 239 -73 901 188 0 0 chr1 34691935 34692084 -207972269 + AluJo/FRAM SINE Alu 154 302 -10 2366 96 0 22 chr1 34692212 34692525 -207971828 + AluSq SINE Alu 1 306 -7 1091 139 0 23 chr1 34692665 34692838 -207971515 + AluJo SINE Alu 124 292 -20 909 270 117 61 chr1 34692923 34693624 -207970729 + MER21B LTR ERV1 1 740 -123 875 161 78 64 chr1 34693943 34694134 -207970219 - L1MB7 LINE L1 -55 6129 5942 2223 95 21 0 chr1 34694134 34694418 -207969935 - AluSq SINE Alu -23 290 1 875 161 78 64 chr1 34694418 34694459 -207969894 - L1MB7 LINE L1 -242 5942 5903 2052 161 3 0 chr1 34694459 34694770 -207969583 - AluSx SINE Alu 0 312 1 875 161 78 64 chr1 34694770 34694888 -207969465 - L1MB7 LINE L1 -281 5903 5708 2331 116 0 0 chr1 34694896 34695199 -207969154 + AluSx SINE Alu 1 303 -9 341 191 66 103 chr1 34695304 34695440 -207968913 + MER58B DNA MER1_type 182 312 -29 210 105 0 0 chr1 34696220 34696258 -207968095 + (T)n Simple_repeat Simple_repeat 1 38 0 896 164 16 55 chr1 34698156 34698339 -207966014 + AluSg/x SINE Alu 137 312 0 2322 105 0 0 chr1 34698377 34698671 -207965682 + AluSg SINE Alu 1 294 -16 2097 92 60 3 chr1 34698890 34699172 -207965181 + AluSc SINE Alu 1 298 -11 2049 138 10 10 chr1 34699507 34699819 -207964534 - AluSx SINE Alu 0 312 1 965 123 14 0 chr1 34700898 34701036 -207963317 - FLAM_C SINE Alu -3 140 1 1035 165 142 0 chr1 34701906 34702160 -207962193 + MER33 DNA MER1_type 10 299 -25 450 240 156 7 chr1 34702594 34702748 -207961605 - MIR SINE MIR -64 198 22 2450 87 0 3 chr1 34702964 34703264 -207961089 + AluSq SINE Alu 1 299 -14 2287 95 14 3 chr1 34703282 34703578 -207960775 + AluSc SINE Alu 1 299 -10 224 319 69 0 chr1 34703635 34703707 -207960646 + L2 LINE L2 2897 2973 -299 2055 96 56 0 chr1 34703722 34704042 -207960311 - AluSx SINE Alu 0 336 2 467 305 90 11 chr1 34704086 34704263 -207960090 + MIR SINE MIR 22 212 -50 255 138 169 15 chr1 34704392 34704457 -207959896 + HsTC2 DNA Tc2 3 77 -1821 1930 86 71 0 chr1 34704520 34704789 -207959564 - AluY SINE Alu -23 288 1 2332 71 10 7 chr1 34704849 34705144 -207959209 - AluSc SINE Alu -13 296 1 1676 105 27 27 chr1 34705153 34705410 -207958943 - AluSg1 SINE Alu 0 309 53 251 214 43 57 chr1 34705434 34705504 -207958849 + L2 LINE L2 3203 3271 -1 2458 81 0 0 chr1 34705581 34705877 -207958476 + AluSc SINE Alu 1 296 -13 319 238 0 0 chr1 34706016 34706079 -207958274 + AluJ/FLAM SINE Alu 1 63 -239 2102 108 4 0 chr1 34706305 34706584 -207957769 + AluSg SINE Alu 22 301 -9 2019 121 3 24 chr1 34706596 34706724 -207957629 + AluSx SINE Alu 9 138 -174 1917 134 17 14 chr1 34706724 34706856 -207957497 + AluSx SINE Alu 1 131 -181 2258 120 0 0 chr1 34706856 34707165 -207957188 + AluY SINE Alu 1 309 -2 1917 134 17 14 chr1 34707165 34707322 -207957031 + AluSx SINE Alu 131 291 -21 2019 121 3 24 chr1 34707322 34707490 -207956863 + AluSx SINE Alu 138 299 -13 439 122 17 211 chr1 34707591 34707771 -207956582 + Charlie5 DNA MER1_type 2480 2585 -27 2190 81 18 0 chr1 34707870 34708155 -207956198 + AluY SINE Alu 1 290 -21 189 0 0 0 chr1 34708157 34708178 -207956175 + (CAT)n Simple_repeat Simple_repeat 2 22 0 1923 116 20 34 chr1 34708387 34708679 -207955674 + AluSx SINE Alu 3 290 -22 1633 144 12 4 chr1 34708680 34708937 -207955416 + AluSx SINE Alu 40 298 -14 375 252 59 112 chr1 34709038 34709340 -207955013 + L1M2 LINE L1 1737 3819 -3029 680 165 0 0 chr1 34709340 34709455 -207954898 + AluSg/x SINE Alu 188 302 -10 453 36 0 0 chr1 34709461 34709516 -207954837 + (TG)n Simple_repeat Simple_repeat 2 56 0 2070 121 0 4 chr1 34709535 34709808 -207954545 + AluSx SINE Alu 2 273 -39 284 210 0 16 chr1 34709968 34710030 -207954323 + MIR3 SINE MIR 3 63 -145 187 261 43 0 chr1 34710228 34710274 -207954079 - L2 LINE L2 0 3313 3266 384 207 12 24 chr1 34710307 34710389 -207953964 - MIR3 SINE MIR -17 191 111 2251 106 10 0 chr1 34711302 34711605 -207952748 + AluSx SINE Alu 1 306 -6 2399 84 7 0 chr1 34711607 34711906 -207952447 + AluSq SINE Alu 1 301 -12 400 286 54 38 chr1 34712787 34712972 -207951381 + MIR3 SINE MIR 13 200 -8 489 290 164 38 chr1 34713201 34713463 -207950890 + L2 LINE L2 2978 3272 0 271 328 15 23 chr1 34713822 34713953 -207950400 - L2 LINE L2 -239 3033 2904 2070 100 0 75 chr1 34714107 34714283 -207950070 - AluSq SINE Alu -16 297 154 2217 105 0 16 chr1 34714283 34714588 -207949765 - AluSq SINE Alu -13 300 1 2070 100 0 75 chr1 34714588 34714732 -207949621 - AluSq SINE Alu -159 154 1 294 297 79 73 chr1 34714880 34714940 -207949413 - MIR3 SINE MIR -7 201 143 2273 91 37 0 chr1 34714940 34715236 -207949117 + AluSg SINE Alu 1 307 -3 294 297 79 73 chr1 34715236 34715340 -207949013 - MIR3 SINE MIR -65 143 36 247 330 57 28 chr1 34715693 34715799 -207948554 + L2 LINE L2 3204 3312 -1 * 274 214 180 0 chr1 34715798 34715887 -207948466 + MIR SINE MIR 79 183 -79 2610 64 0 3 chr1 34716155 34716467 -207947886 - AluY SINE Alu 0 311 1 536 247 31 25 chr1 34716661 34716823 -207947530 - MIR SINE MIR -41 221 59 2368 100 0 0 chr1 34716837 34717138 -207947215 - AluSg SINE Alu -9 301 1 2187 115 16 3 chr1 34717266 34717571 -207946782 - AluSx SINE Alu -3 309 1 293 153 153 0 chr1 34717809 34717881 -207946472 + MIR3 SINE MIR 101 183 -25 204 192 0 77 chr1 34717952 34718004 -207946349 + MIR SINE MIR 92 139 -69 184 286 24 0 chr1 34718130 34718172 -207946181 + MIR3 SINE MIR 120 162 -46 22 70 0 0 chr1 34720271 34720314 -207944039 + GC_rich Low_complexity Low_complexity 1 43 0 38 108 0 0 chr1 34720391 34720548 -207943805 + GC_rich Low_complexity Low_complexity 1 157 0 282 209 23 39 chr1 34720558 34720687 -207943666 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 2261 113 7 3 chr1 34722195 34722497 -207941856 + AluSx SINE Alu 2 304 -8 1663 154 10 48 chr1 34722514 34722806 -207941547 + AluJb SINE Alu 1 281 -31 3118 88 8 42 chr1 34722937 34723281 -207941072 - MER4D LTR ERV1 -388 484 161 1554 183 35 3 chr1 34723281 34723570 -207940783 + AluJb SINE Alu 3 300 -12 3118 88 8 42 chr1 34723570 34723725 -207940628 - MER4D LTR ERV1 -711 161 2 3898 105 4 4 chr1 34723826 34724389 -207939964 - LTR6A LTR ERV1 -1 563 1 297 311 76 8 chr1 34725162 34725281 -207939072 - L2 LINE L2 -4 3268 3142 2292 114 0 0 chr1 34725470 34725768 -207938585 - AluSq SINE Alu -15 298 1 288 270 173 30 chr1 34725812 34725988 -207938365 - MIR SINE MIR -51 211 16 743 196 0 0 chr1 34726056 34726189 -207938164 + FLAM_C SINE Alu 1 133 0 2134 147 0 6 chr1 34726204 34726517 -207937836 + AluSx SINE Alu 1 311 -1 857 311 47 3 chr1 34726590 34726908 -207937445 - L2 LINE L2 -3 3310 2979 371 317 0 0 chr1 34726901 34727002 -207937351 - L2 LINE L2 -14 3299 3199 * 2215 79 68 0 chr1 34727092 34727371 -207936982 + AluSx SINE Alu 1 298 -14 1799 167 24 3 chr1 34727390 34727678 -207936675 + AluJo SINE Alu 2 295 -17 260 289 8 47 chr1 34727678 34727806 -207936547 + L1MEd LINE L1 1089 1211 -4908 1779 184 0 3 chr1 34727855 34728148 -207936205 + AluJb SINE Alu 21 312 0 1268 241 60 62 chr1 34728229 34728623 -207935730 - LTR38 LTR ERV1 0 556 162 881 121 87 7 chr1 34728623 34728772 -207935581 - L1PA15 LINE L1 0 6165 6005 1268 241 60 62 chr1 34728772 34728874 -207935479 - LTR38 LTR ERV1 -394 162 61 9859 115 46 50 chr1 34729166 34729612 -207934741 + Tigger1 DNA MER2_type 1 447 -1971 2376 86 0 10 chr1 34729612 34729915 -207934438 - AluSg1 SINE Alu -9 300 1 9859 115 46 50 chr1 34729915 34730319 -207934034 + Tigger1 DNA MER2_type 447 851 -1567 10273 53 5 106 chr1 34730319 34731856 -207932497 + SVA Other Other 1 1382 -4 9859 115 46 50 chr1 34731856 34732163 -207932190 + Tigger1 DNA MER2_type 851 1158 -1260 2063 109 0 67 chr1 34732163 34732317 -207932036 + AluSx SINE Alu 1 125 -187 2256 108 10 0 chr1 34732317 34732614 -207931739 + AluSg SINE Alu 1 300 -10 2063 109 0 67 chr1 34732614 34732771 -207931582 + AluSx SINE Alu 125 291 -21 9859 115 46 50 chr1 34732771 34733346 -207931007 + Tigger1 DNA MER2_type 1158 1730 -688 2800 13 0 0 chr1 34733346 34733645 -207930708 + AluYa5 SINE Alu 1 299 -12 319 233 115 51 chr1 34733677 34733847 -207930506 + MIR SINE MIR 69 262 0 319 194 45 0 chr1 34733881 34733948 -207930405 - MER103 DNA DNA -94 72 3 21 57 0 0 chr1 34739199 34739234 -207925119 + AT_rich Low_complexity Low_complexity 1 35 0 2317 82 3 17 chr1 34740525 34740819 -207923534 - AluSp SINE Alu -23 290 1 329 265 128 51 chr1 34740824 34741058 -207923295 + L1ME LINE L1 5521 5772 -349 2231 107 0 3 chr1 34741059 34741350 -207923003 + AluY SINE Alu 2 291 -20 2222 103 3 0 chr1 34741406 34741688 -207922665 - AluSp SINE Alu -15 298 16 546 136 0 0 chr1 34741714 34741795 -207922558 + AluSg1 SINE Alu 10 90 -219 1585 183 30 8 chr1 34741943 34742211 -207922142 + AluJb SINE Alu 26 299 -13 916 143 148 123 chr1 34742211 34742326 -207922027 + Charlie1 DNA MER1_type 2165 2276 -485 2333 71 10 17 chr1 34742326 34742620 -207921733 + AluSx SINE Alu 1 292 -20 916 143 148 123 chr1 34742620 34742675 -207921678 + Charlie1 DNA MER1_type 2276 2328 -433 719 89 0 0 chr1 34742675 34742776 -207921577 - HY3 scRNA scRNA 0 101 1 916 143 148 123 chr1 34742776 34742952 -207921401 + Charlie1 DNA MER1_type 2328 2526 -235 1327 231 10 10 chr1 34742952 34743247 -207921106 - AluJo SINE Alu -15 297 3 916 143 148 123 chr1 34743247 34743289 -207921064 + Charlie1 DNA MER1_type 2526 2565 -196 546 176 0 88 chr1 34743310 34743405 -207920948 + FAM SINE Alu 1 6 -179 2201 137 0 10 chr1 34743405 34743711 -207920642 - AluSx SINE Alu -9 303 1 546 176 0 88 chr1 34743711 34743751 -207920602 + FAM SINE Alu 6 48 -1 637 185 23 17 chr1 34743752 34743790 -207920563 + Charlie1 DNA MER1_type 2555 2591 -170 1897 173 0 3 chr1 34743790 34744096 -207920257 - AluSx SINE Alu -7 305 1 637 185 23 17 chr1 34744096 34744230 -207920123 + Charlie1 DNA MER1_type 2591 2728 -33 1833 97 4 0 chr1 34744237 34744463 -207919890 + AluSc SINE Alu 1 227 -82 213 39 0 0 chr1 34744473 34744499 -207919854 + (A)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr1 34744553 34744590 -207919763 + AT_rich Low_complexity Low_complexity 1 37 0 1923 143 0 17 chr1 34744592 34744886 -207919467 + AluSx SINE Alu 3 291 -21 977 206 18 56 chr1 34744889 34745145 -207919208 - L1ME2 LINE L1 -16 6148 5903 2134 110 7 17 chr1 34745145 34745444 -207918909 - AluSg SINE Alu -14 296 1 977 206 18 56 chr1 34745444 34745473 -207918880 - L1ME2 LINE L1 -261 5903 5874 2426 177 103 21 chr1 34745476 34746002 -207918351 - MER67B LTR ERV1 0 661 93 1056 133 0 7 chr1 34746202 34746352 -207918001 - AluSq/x SINE Alu -164 149 1 569 244 78 6 chr1 34746380 34746627 -207917726 + L2 LINE L2 2774 3036 -277 2371 93 7 7 chr1 34746632 34746942 -207917411 - AluSx SINE Alu -2 310 1 1526 192 4 4 chr1 34746963 34747229 -207917124 - AluJb SINE Alu -46 266 1 313 234 0 53 chr1 34747359 34747453 -207916900 - L2 LINE L2 0 3272 3184 2217 115 0 16 chr1 34747529 34747833 -207916520 - AluSx SINE Alu -5 307 9 309 242 39 112 chr1 34749451 34749629 -207914724 + MIR3 SINE MIR 24 188 -20 186 103 0 0 chr1 34751032 34751061 -207913292 + (TCCCC)n Simple_repeat Simple_repeat 2 30 0 234 267 103 35 chr1 34751205 34751321 -207913032 + MIR3 SINE MIR 58 181 -27 1923 135 35 3 chr1 34751379 34751661 -207912692 + AluSq SINE Alu 1 291 -22 2359 83 0 17 chr1 34752036 34752337 -207912016 + AluSg SINE Alu 1 296 -14 617 192 120 0 chr1 34752338 34752463 -207911890 - MER58C DNA MER1_type -43 172 33 2314 112 0 10 chr1 34752528 34752841 -207911512 + AluSg SINE Alu 1 310 0 1241 86 11 75 chr1 34752844 34753030 -207911323 + AluSp SINE Alu 2 175 -138 1275 157 0 0 chr1 34753044 34753235 -207911118 + AluSg/x SINE Alu 121 311 -1 3029 122 64 12 chr1 34753247 34753746 -207910607 + MER1A DNA MER1_type 3 527 0 906 269 78 58 chr1 34753804 34754291 -207910062 + L1MC/D LINE L1 5291 5787 -2021 2173 98 10 17 chr1 34754438 34754733 -207909620 - AluSx SINE Alu -19 293 1 2392 89 7 3 chr1 34754733 34755037 -207909316 - AluSx SINE Alu -7 305 1 202 311 0 0 chr1 34755265 34755326 -207909027 - MIR SINE MIR -86 122 62 439 100 0 29 chr1 34755333 34755403 -207908950 + AluJ/FRAM SINE Alu 220 287 -25 315 0 0 0 chr1 34755403 34755438 -207908915 + (CA)n Simple_repeat Simple_repeat 2 36 0 2511 51 10 0 chr1 34755438 34755733 -207908620 - AluSp SINE Alu -15 298 1 256 160 20 0 chr1 34758140 34758190 -207906163 + Alu SINE Alu 1 51 -251 2103 142 0 3 chr1 34758346 34758641 -207905712 + AluSx SINE Alu 1 294 -18 619 159 93 0 chr1 34758669 34758776 -207905577 + FLAM_C SINE Alu 1 117 -16 515 226 215 34 chr1 34758838 34759015 -207905338 - MER3 DNA MER1_type 0 209 1 258 319 108 88 chr1 34759338 34759771 -207904582 + L2 LINE L2 2814 3255 -17 1487 150 67 33 chr1 34759771 34760071 -207904282 - AluJb SINE Alu 0 312 3 2081 129 0 3 chr1 34760456 34760750 -207903603 + AluSx SINE Alu 1 293 -19 387 228 65 32 chr1 34760970 34761093 -207903260 - MIR SINE MIR -111 151 25 1834 195 0 0 chr1 34761231 34761538 -207902815 - AluJo SINE Alu -5 307 1 243 0 0 0 chr1 34761577 34761604 -207902749 + (TA)n Simple_repeat Simple_repeat 1 27 0 2455 99 0 3 chr1 34761604 34761918 -207902435 - AluSq SINE Alu 0 313 1 1882 147 29 19 chr1 34761937 34762244 -207902109 + AluJo SINE Alu 1 310 -2 2229 129 0 10 chr1 34762277 34762588 -207901765 - AluSg SINE Alu -2 308 1 743 181 90 57 chr1 34762653 34762779 -207901574 + MER58C DNA MER1_type 33 168 -2252 2340 94 0 7 chr1 34762779 34763076 -207901277 - AluSc SINE Alu -14 295 1 743 181 90 57 chr1 34763076 34763126 -207901227 + MER58C DNA MER1_type 168 215 0 2443 91 0 0 chr1 34763254 34763562 -207900791 - AluY SINE Alu -2 309 2 2417 86 7 0 chr1 34763572 34763873 -207900480 - AluSc SINE Alu -6 303 1 443 145 26 0 chr1 34763910 34763986 -207900367 + AluS SINE Alu 2 79 -234 1881 89 20 0 chr1 34764087 34764333 -207900020 + AluSq SINE Alu 53 303 -10 2412 73 39 25 chr1 34764333 34764668 -207899685 + MER4D LTR ERV1 511 853 -19 2085 145 0 3 chr1 34764668 34764964 -207899389 - AluSx SINE Alu -17 295 1 2412 73 39 25 chr1 34764964 34764985 -207899368 + MER4D LTR ERV1 853 872 0 348 309 233 37 chr1 34764998 34765736 -207898617 + L2 LINE L2 1753 2676 -638 2116 141 3 0 chr1 34765736 34766034 -207898319 - AluSx SINE Alu -13 299 1 348 309 233 37 chr1 34766034 34766133 -207898220 + L2 LINE L2 2676 2754 -560 2195 114 3 16 chr1 34766412 34766720 -207897633 + AluSq SINE Alu 1 304 -9 2005 170 45 2 chr1 34766852 34767172 -207897181 + L1MB7 LINE L1 5728 6072 -112 2562 53 0 0 chr1 34767172 34767474 -207896879 + AluY SINE Alu 1 302 -9 2005 170 45 2 chr1 34767474 34767577 -207896776 + L1MB7 LINE L1 6072 6169 -15 262 303 96 32 chr1 34767701 34767889 -207896464 - L2 LINE L2 -140 3173 2974 248 208 0 0 chr1 34768062 34768110 -207896243 + L2 LINE L2 3004 3051 -221 187 195 0 24 chr1 34768223 34768264 -207896089 + L2 LINE L2 3243 3282 -31 2052 141 13 0 chr1 34770630 34770936 -207893417 + AluSx SINE Alu 1 310 -2 2350 93 3 7 chr1 34771489 34771789 -207892564 - AluSc SINE Alu -10 299 1 241 160 20 0 chr1 34771789 34771839 -207892514 + MER58C DNA MER1_type 165 215 0 2447 91 0 0 chr1 34771967 34772275 -207892078 - AluY SINE Alu -2 309 2 2423 85 10 0 chr1 34772285 34772590 -207891763 - AluSx SINE Alu -4 308 1 928 291 100 46 chr1 34772612 34772999 -207891354 - L1MEc LINE L1 -4574 1822 1457 1710 178 24 10 chr1 34772999 34773297 -207891056 - AluJb SINE Alu -10 302 1 928 291 100 46 chr1 34773297 34773728 -207890625 - L1MEc LINE L1 -4939 1457 942 2312 74 35 0 chr1 34773728 34774049 -207890304 - AluY SINE Alu 0 311 1 928 291 100 46 chr1 34774049 34774190 -207890163 - L1MEc LINE L1 -5454 942 810 2435 97 0 0 chr1 34774810 34775138 -207889215 - AluSq SINE Alu 0 328 1 271 308 15 62 chr1 34775963 34776093 -207888260 - MER5A DNA MER1_type -4 185 62 2491 67 0 19 chr1 34776119 34776431 -207887922 - AluY SINE Alu -5 306 1 1501 41 5 41 chr1 34776531 34776725 -207887628 + AluY SINE Alu 114 300 -11 213 328 62 0 chr1 34777024 34777088 -207887265 + MIR SINE MIR 33 100 -162 284 330 45 0 chr1 34777100 34777212 -207887141 + MIR SINE MIR 12 128 -134 2498 56 0 26 chr1 34778002 34778307 -207886046 + AluY SINE Alu 1 297 -14 1172 188 4 4 chr1 34778636 34778865 -207885488 - AluJb SINE Alu 0 312 84 195 42 0 0 chr1 34778908 34778932 -207885421 + (TA)n Simple_repeat Simple_repeat 1 24 0 418 284 18 71 chr1 34778977 34779146 -207885207 - MIR3 SINE MIR -33 175 16 701 288 213 17 chr1 34779648 34780051 -207884302 - L1MC4a LINE L1 -1942 5866 5385 488 221 0 11 chr1 34781070 34781165 -207883188 - L1MC1 LINE L1 -60 6273 6180 331 231 214 12 chr1 34781170 34781343 -207883010 + MIR SINE MIR 28 235 -27 287 278 49 0 chr1 34781458 34781570 -207882783 + MIR SINE MIR 56 171 -63 2163 122 10 0 chr1 34781570 34781866 -207882487 - AluSx SINE Alu -13 299 1 216 0 0 0 chr1 34781869 34781893 -207882460 + (T)n Simple_repeat Simple_repeat 1 24 0 314 275 133 13 chr1 34782270 34782416 -207881937 + MIR SINE MIR 33 189 -62 22 80 0 13 chr1 34782742 34782804 -207881549 + AT_rich Low_complexity Low_complexity 1 63 -11 1517 194 20 3 chr1 34782804 34783097 -207881256 + AluJo SINE Alu 1 298 -14 22 80 0 13 chr1 34783097 34783109 -207881244 + AT_rich Low_complexity Low_complexity 63 74 0 265 262 60 12 chr1 34783328 34783412 -207880941 + L2 LINE L2 1875 1962 -1352 1654 171 30 26 chr1 34783540 34783844 -207880509 - AluJo SINE Alu -7 305 1 1334 182 21 106 chr1 34784849 34785179 -207879174 + AluYb8 SINE Alu 1 302 -16 265 289 258 21 chr1 34786116 34786306 -207878047 + MIR SINE MIR 2 236 -26 679 361 30 12 chr1 34787148 34787441 -207876912 - L3 LINE CR1 -1 1576 1275 2225 99 26 0 chr1 34787441 34787745 -207876608 - AluSx SINE Alu 0 312 1 679 361 30 12 chr1 34787745 34787789 -207876564 - L3 LINE CR1 -302 1275 1233 252 159 57 68 chr1 34787789 34787877 -207876476 - L1ME4a LINE L1 -62 6059 5973 728 252 148 13 chr1 34787914 34788232 -207876121 - L1ME4a LINE L1 -225 5896 5536 24 32 0 0 chr1 34788300 34788331 -207876022 + AT_rich Low_complexity Low_complexity 1 31 0 1101 228 90 112 chr1 34788331 34788944 -207875409 - L1MC4 LINE L1 -292 7750 7160 2251 106 10 0 chr1 34788944 34789236 -207875117 + AluSq SINE Alu 1 295 -18 1101 228 90 112 chr1 34789236 34789478 -207874875 - L1MC4 LINE L1 -882 7160 6914 2466 208 19 95 chr1 34789509 34790209 -207874144 - L1MA8 LINE L1 -148 6143 5506 2103 136 3 3 chr1 34790209 34790517 -207873836 - AluSx SINE Alu -4 308 1 2466 208 19 95 chr1 34790517 34790592 -207873761 - L1MA8 LINE L1 -785 5506 5427 293 233 67 11 chr1 34790567 34790657 -207873696 - HAL1 LINE L1 -340 2167 2073 * 858 161 45 19 chr1 34790768 34790923 -207873430 + FRAM SINE Alu 1 157 -19 428 174 283 0 chr1 34790929 34791021 -207873332 - FLAM_C SINE Alu -15 118 1 551 192 48 8 chr1 34791024 34791149 -207873204 - L1MEc LINE L1 -3060 3155 3026 2033 144 10 3 chr1 34791149 34791455 -207872898 - AluJb SINE Alu -4 308 1 2200 119 3 7 chr1 34791463 34791765 -207872588 - AluSg SINE Alu -9 301 1 744 167 70 87 chr1 34791778 34792077 -207872276 - L1MEc LINE L1 -4031 2365 2072 756 215 7 0 chr1 34792082 34792226 -207872127 - FRAM SINE Alu -12 164 20 2454 74 7 0 chr1 34792257 34792556 -207871797 - AluSp SINE Alu -12 301 1 720 228 70 21 chr1 34792558 34792799 -207871554 - L1MEc LINE L1 -4529 1867 1615 330 264 174 7 chr1 34792831 34792975 -207871378 - L1MEc LINE L1 -6192 204 37 23 68 0 0 chr1 34793227 34793271 -207871082 + AT_rich Low_complexity Low_complexity 1 44 0 2277 94 10 0 chr1 34793508 34793807 -207870546 + AluSq SINE Alu 6 307 -6 433 272 66 42 chr1 34794555 34794609 -207869744 + MIR SINE MIR 44 95 -167 1830 130 33 4 chr1 34794609 34794885 -207869468 - AluJb SINE Alu 0 312 29 433 272 66 42 chr1 34794885 34795043 -207869310 + MIR SINE MIR 95 261 -1 602 172 78 117 chr1 34795275 34795455 -207868898 + MIR SINE MIR 52 224 -38 251 220 66 33 chr1 34796038 34796129 -207868224 - L1P LINE L1 -743 5408 5315 386 285 79 47 chr1 34796421 34796656 -207867697 - MIR SINE MIR -1 261 17 804 159 19 125 chr1 34796838 34796860 -207867493 + MER5A DNA MER1_type 4 27 -162 2237 101 0 44 chr1 34796860 34797176 -207867177 + AluSx SINE Alu 1 302 -10 804 159 19 125 chr1 34797176 34797361 -207866992 + MER5A DNA MER1_type 27 189 0 301 259 154 35 chr1 34797448 34797520 -207866833 + MIR SINE MIR 2 64 -198 1975 135 46 0 chr1 34797520 34797802 -207866551 + AluSx SINE Alu 1 295 -17 301 259 154 35 chr1 34797802 34797930 -207866423 + MIR SINE MIR 64 226 -36 273 355 154 31 chr1 34797989 34798347 -207866006 + L2 LINE L2 2871 3272 0 1868 131 53 0 chr1 34798682 34798964 -207865389 + AluSg SINE Alu 1 297 -13 1857 139 33 13 chr1 34799093 34799394 -207864959 + AluJo SINE Alu 1 307 -5 252 217 0 0 chr1 34799396 34799442 -207864911 + MIR SINE MIR 30 75 -133 919 214 229 23 chr1 34799580 34799663 -207864690 + L2 LINE L2 2444 2509 -805 2273 140 9 6 chr1 34799663 34800006 -207864347 + MER2 DNA MER2_type 1 344 0 919 214 229 23 chr1 34800006 34800272 -207864081 + L2 LINE L2 2509 2865 -449 2629 186 116 104 chr1 34800488 34800630 -207863723 - L1MC/D LINE L1 -743 5403 5264 2527 69 0 3 chr1 34800630 34800935 -207863418 + AluY SINE Alu 1 304 -7 2629 186 116 104 chr1 34800935 34801207 -207863146 - L1MC/D LINE L1 -882 5264 4997 2372 91 3 0 chr1 34801207 34801504 -207862849 + AluSp SINE Alu 9 306 -7 2629 186 116 104 chr1 34801504 34801674 -207862679 - L1MC/D LINE L1 -1149 4997 4830 1682 153 35 21 chr1 34801674 34801956 -207862397 + AluJb SINE Alu 21 306 -6 276 30 0 0 chr1 34801957 34801990 -207862363 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 306 0 0 0 chr1 34801989 34802023 -207862330 + (CA)n Simple_repeat Simple_repeat 2 35 0 2629 186 116 104 chr1 34801990 34802348 -207862005 - L1MC/D LINE L1 -1316 4830 4478 1973 153 0 3 chr1 34802348 34802648 -207861705 - AluSx SINE Alu -13 299 1 2629 186 116 104 chr1 34802648 34803041 -207861312 - L1MC/D LINE L1 -1668 4478 4122 1831 83 120 26 chr1 34803058 34803214 -207861139 - AluY SINE Alu 0 311 171 2085 124 17 0 chr1 34803214 34803505 -207860848 - AluSp SINE Alu -17 296 1 1831 83 120 26 chr1 34803505 34803640 -207860713 - AluY SINE Alu -140 171 1 2298 100 0 7 chr1 34803667 34803968 -207860385 - AluSx SINE Alu -13 299 1 840 155 8 0 chr1 34803971 34804100 -207860253 - AluSq/x SINE Alu -180 133 4 428 143 0 0 chr1 34804142 34804205 -207860148 + AluJ/FLAM SINE Alu 12 74 -238 1829 121 35 14 chr1 34804308 34804615 -207859738 + AluSq SINE Alu 1 313 0 1072 112 39 22 chr1 34804615 34804794 -207859559 + AluSg/x SINE Alu 131 312 0 2205 118 7 0 chr1 34804797 34805102 -207859251 + AluSc SINE Alu 3 309 0 2692 119 26 18 chr1 34805103 34805386 -207858967 + L1P4 LINE L1 5317 5607 -559 2066 123 27 0 chr1 34805386 34805687 -207858666 + AluSp SINE Alu 1 309 -4 2692 119 26 18 chr1 34805687 34805858 -207858495 + L1P4 LINE L1 5607 5775 -391 1647 192 0 13 chr1 34805865 34806167 -207858186 + AluJb SINE Alu 1 298 -14 1486 137 26 26 chr1 34806301 34806571 -207857782 + AluSx SINE Alu 40 309 -3 740 212 34 0 chr1 34806572 34806718 -207857635 + AluJo/FRAM SINE Alu 138 288 -14 382 283 87 14 chr1 34806936 34807074 -207857279 + L1ME4a LINE L1 5490 5637 -484 273 268 197 22 chr1 34807111 34807294 -207857059 + L1ME4a LINE L1 5721 5937 -184 2167 114 3 13 chr1 34807393 34807700 -207856653 - AluSq SINE Alu -9 304 1 285 300 15 62 chr1 34808525 34808655 -207855698 - MER5A DNA MER1_type -4 185 62 2491 67 0 19 chr1 34808681 34808993 -207855360 - AluY SINE Alu -5 306 1 189 0 0 0 chr1 34809017 34809038 -207855315 + (A)n Simple_repeat Simple_repeat 1 21 0 2269 91 3 0 chr1 34809043 34809329 -207855024 + AluSq SINE Alu 7 293 -20 2354 100 0 3 chr1 34809330 34809631 -207854722 + AluSx SINE Alu 1 300 -12 229 216 20 0 chr1 34809631 34809682 -207854671 - MER5A DNA MER1_type -61 128 77 226 200 148 35 chr1 34809908 34810023 -207854330 + L1ME LINE L1 5617 5744 -377 1567 195 0 4 chr1 34810105 34810367 -207853986 + AluJb SINE Alu 12 272 -40 1328 207 7 29 chr1 34810379 34810490 -207853863 + AluJo SINE Alu 27 139 -173 2266 78 11 3 chr1 34810490 34810800 -207853553 + AluSp SINE Alu 2 313 0 1328 207 7 29 chr1 34810800 34810962 -207853391 + AluJo SINE Alu 139 295 -17 1636 156 35 0 chr1 34811128 34811385 -207852968 - AluJb SINE Alu -46 266 1 2368 70 0 17 chr1 34811408 34811706 -207852647 + AluY SINE Alu 3 295 -16 1745 149 11 8 chr1 34811795 34812057 -207852296 + AluJb SINE Alu 6 268 -44 673 88 53 26 chr1 34813199 34813313 -207851040 + MER47A DNA MER2_type 45 161 -205 1048 129 69 45 chr1 34813334 34813536 -207850817 + AluSp SINE Alu 1 207 -106 22 70 0 0 chr1 34814020 34814063 -207850290 + GC_rich Low_complexity Low_complexity 1 43 0 37 109 0 0 chr1 34814140 34814296 -207850057 + GC_rich Low_complexity Low_complexity 1 156 0 282 209 23 39 chr1 34814306 34814435 -207849918 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 2473 64 0 3 chr1 34815048 34815343 -207849010 - AluSx SINE Alu -18 294 1 357 285 110 46 chr1 34815343 34815624 -207848729 + L3 LINE CR1 613 911 -666 283 282 179 8 chr1 34815608 34815725 -207848628 - L2 LINE L2 -9 3263 3127 * 350 268 18 0 chr1 34815742 34815854 -207848499 + (TA)n Simple_repeat Simple_repeat 1 114 0 1972 131 3 36 chr1 34816207 34816513 -207847840 + AluJo SINE Alu 2 297 -15 790 182 171 6 chr1 34816570 34816746 -207847607 + MER3 DNA MER1_type 5 209 0 2236 94 3 3 chr1 34816913 34817201 -207847152 + AluSg SINE Alu 1 288 -22 887 161 0 0 chr1 34817366 34817503 -207846850 + FLAM_C SINE Alu 1 137 -6 1675 145 59 38 chr1 34818417 34818706 -207845647 + AluJb SINE Alu 1 295 -17 880 130 0 36 chr1 34818947 34819085 -207845268 - FLAM_C SINE Alu 0 133 1 210 256 51 51 chr1 34820666 34820744 -207843609 - MIR SINE MIR -162 100 23 2554 73 0 3 chr1 34821482 34821795 -207842558 + AluSq SINE Alu 1 312 -1 2266 108 7 3 chr1 34821815 34822122 -207842231 + AluY SINE Alu 1 308 -3 338 261 42 34 chr1 34822248 34822367 -207841986 - L2 LINE L2 0 3313 3194 654 231 0 64 chr1 34822720 34822876 -207841477 - FRAM SINE Alu -30 146 1 2336 119 0 0 chr1 34822881 34823193 -207841160 - AluSx SINE Alu 0 312 1 285 300 15 62 chr1 34824018 34824148 -207840205 - MER5A DNA MER1_type -4 185 62 1543 55 0 25 chr1 34824174 34824373 -207839980 - AluY SINE Alu -5 306 113 420 241 29 51 chr1 35024402 35024539 -207639814 - L2 LINE L2 -185 3087 2954 266 104 0 21 chr1 35024588 35024636 -207639717 + (TG)n Simple_repeat Simple_repeat 1 47 0 219 160 40 20 chr1 35024644 35024694 -207639659 + L2 LINE L2 3217 3267 -5 389 235 52 9 chr1 35024962 35025077 -207639276 - MIR SINE MIR -122 140 21 233 171 24 0 chr1 35025445 35025486 -207638867 + MIR3 SINE MIR 119 160 -48 418 227 127 27 chr1 35025545 35025695 -207638658 - MER103 DNA DNA 0 166 2 1211 128 55 48 chr1 35025812 35025991 -207638362 - LTR45B LTR ERV1 -80 409 233 2361 89 0 0 chr1 35025991 35026284 -207638069 - AluY SINE Alu -18 293 1 1211 128 55 48 chr1 35026284 35026446 -207637907 - LTR45B LTR ERV1 -256 233 24 2181 92 53 0 chr1 35026446 35026730 -207637623 + AluSx SINE Alu 1 299 -13 189 200 0 44 chr1 35026770 35026784 -207637569 + L3 LINE CR1 1516 1558 -19 189 65 0 32 chr1 35026784 35026815 -207637538 + MIR3 SINE MIR 156 185 -23 282 288 206 12 chr1 35027207 35027367 -207636986 + L3 LINE CR1 1280 1470 -107 1161 286 74 12 chr1 35027489 35027894 -207636459 - MLT1H LTR MaLR -107 442 13 387 302 14 36 chr1 35028081 35028220 -207636133 - MIR SINE MIR -48 214 79 535 284 85 28 chr1 35028546 35028722 -207635631 - L2 LINE L2 -6 3307 3122 290 304 43 9 chr1 35029155 35029270 -207635083 + MER117 DNA MER1_type 55 173 -24 873 217 11 0 chr1 35029313 35029488 -207634865 - MER97b DNA MER1_type? -876 177 1 804 198 95 162 chr1 35030179 35030705 -207633648 + LTR16C LTR ERVL 1 491 0 495 307 23 46 chr1 35030871 35031089 -207633264 + MIR SINE MIR 15 227 -35 571 287 97 15 chr1 35032080 35032275 -207632078 + MIR SINE MIR 52 262 0 468 209 64 9 chr1 35032538 35032648 -207631705 - MIR SINE MIR -30 232 117 226 416 8 0 chr1 35032672 35032797 -207631556 - MIR3 SINE MIR -80 128 3 873 270 124 50 chr1 35033041 35033460 -207630893 - MLT1J2 LTR MaLR 0 450 1 306 191 48 129 chr1 35033479 35033626 -207630727 - MIR SINE MIR -4 258 124 683 180 27 7 chr1 35033626 35033776 -207630577 - L1ME1 LINE L1 -188 6047 5895 * 6789 218 100 70 chr1 35033762 35035154 -207629199 - L1ME1 LINE L1 -669 5564 4215 948 168 0 19 chr1 35035154 35035315 -207629038 - AluSg/x SINE Alu -19 290 133 6789 218 100 70 chr1 35035315 35035851 -207628502 - L1ME1 LINE L1 -2018 4215 3696 1724 206 7 0 chr1 35035851 35036147 -207628206 - AluJb SINE Alu -4 308 11 6789 218 100 70 chr1 35036147 35037244 -207627109 - L1ME1 LINE L1 -2537 3696 2120 5205 187 50 37 chr1 35037240 35038045 -207626308 - L1MD1 LINE L1 0 6636 5843 * 2130 115 0 14 chr1 35038045 35038379 -207625974 - AluSx SINE Alu 0 330 1 5205 187 50 37 chr1 35038379 35038536 -207625817 - L1MD1 LINE L1 -793 5843 5689 999 176 6 0 chr1 35038536 35038695 -207625658 - FRAM SINE Alu -6 160 1 5205 187 50 37 chr1 35038695 35038996 -207625357 - L1MD1 LINE L1 -947 5689 5393 324 0 0 0 chr1 35038996 35039032 -207625321 + (TTA)n Simple_repeat Simple_repeat 2 37 0 5205 187 50 37 chr1 35039032 35039496 -207624857 - L1MD1 LINE L1 -1243 5393 4855 2159 130 0 0 chr1 35039496 35039797 -207624556 - AluSx SINE Alu -2 310 10 5205 187 50 37 chr1 35039797 35039951 -207624402 - L1MD1 LINE L1 -1781 4855 4704 302 205 24 12 chr1 35039937 35040020 -207624333 - L1P LINE L1 -1906 4240 4157 * 1430 159 25 138 chr1 35040016 35040450 -207623903 - L1MD1 LINE L1 -6009 531 147 4447 249 60 45 chr1 35040469 35040744 -207623609 - L1ME1 LINE L1 -4264 2132 1863 1773 183 30 0 chr1 35040744 35041044 -207623309 - AluJo SINE Alu -3 309 1 4447 249 60 45 chr1 35041044 35041266 -207623087 - L1ME1 LINE L1 -4533 1863 1646 1732 176 28 14 chr1 35041266 35041623 -207622730 - L1MB7 LINE L1 -5 6179 5818 4447 249 60 45 chr1 35041623 35042070 -207622283 - L1ME1 LINE L1 -4750 1646 1208 2539 57 0 0 chr1 35042070 35042366 -207621987 - AluY SINE Alu -9 302 7 4447 249 60 45 chr1 35042366 35043439 -207620914 - L1ME1 LINE L1 -5188 1208 81 281 220 87 116 chr1 35043663 35043836 -207620517 - MLT1H LTR MaLR -23 526 359 251 293 65 46 chr1 35043814 35044127 -207620226 - MLT1I LTR MaLR -110 299 1 * 2249 116 0 0 chr1 35044131 35044464 -207619889 - AluSx SINE Alu 0 312 1 743 279 147 92 chr1 35044495 35044794 -207619559 - L1MEd LINE L1 -5321 798 517 2187 118 3 31 chr1 35044794 35045115 -207619238 + AluSx SINE Alu 1 312 0 743 279 147 92 chr1 35045115 35045361 -207618992 - L1MEd LINE L1 -5602 517 204 2098 131 7 3 chr1 35045361 35045651 -207618702 + AluSx SINE Alu 1 291 -21 743 279 147 92 chr1 35045651 35045798 -207618555 - L1MEd LINE L1 -5915 204 67 3957 90 19 2 chr1 35045801 35046343 -207618010 - L1PA11 LINE L1 0 6174 5624 600 275 8 0 chr1 35046585 35046716 -207617637 + L2 LINE L2 3137 3268 -4 222 222 19 0 chr1 35046829 35046883 -207617470 + L3 LINE CR1 619 673 -904 366 291 24 16 chr1 35046917 35047044 -207617309 - LTR67 LTR ERVL -2 555 428 1281 189 45 126 chr1 35047071 35047468 -207616885 + MLT1A1 LTR MaLR 1 365 0 6235 190 20 64 chr1 35047468 35047733 -207616620 + MLT1A1-int LTR MaLR 1 276 -1459 1808 185 0 0 chr1 35047733 35048031 -207616322 + AluJo SINE Alu 2 299 -13 6235 190 20 64 chr1 35048031 35049185 -207615168 + MLT1A1-int LTR MaLR 276 1357 -378 991 113 0 0 chr1 35049185 35049318 -207615035 - AluSg SINE Alu -7 303 171 1281 128 0 0 chr1 35049459 35049623 -207614730 - AluSg SINE Alu -146 164 1 1817 142 77 3 chr1 35049623 35049934 -207614419 + MLT1A1-int LTR MaLR 1351 1684 -51 357 96 0 0 chr1 35049939 35049991 -207614362 + MADE1 DNA Mariner 1 52 -28 299 106 21 0 chr1 35049991 35050038 -207614315 + MLT1A1-int LTR MaLR 1688 1735 0 1224 156 45 159 chr1 35050038 35050460 -207613893 + MLT1A2 LTR MaLR 1 374 0 2247 112 0 0 chr1 35051380 35051667 -207612686 - AluSx SINE Alu -25 287 1 366 364 24 34 chr1 35052474 35052683 -207611670 + L3 LINE CR1 718 924 -653 1883 218 107 52 chr1 35053055 35053809 -207610544 - HAL1 LINE L1 -909 1598 803 1352 121 5 15 chr1 35053813 35054019 -207610334 + L1MC1 LINE L1 6113 6316 -17 607 304 15 0 chr1 35054133 35054334 -207610019 - HAL1 LINE L1 -1696 811 608 1863 143 3 7 chr1 35054396 35054682 -207609671 + AluJo SINE Alu 2 286 -26 1620 0 0 0 chr1 35054693 35054899 -207609454 + (CAAAC)n Simple_repeat Simple_repeat 1 206 0 302 288 141 60 chr1 35054904 35055088 -207609265 + L1ME4a LINE L1 4735 4933 -1213 21 0 0 0 chr1 35055201 35055222 -207609131 + AT_rich Low_complexity Low_complexity 1 21 0 394 316 140 16 chr1 35055296 35055489 -207608864 + L1ME4a LINE L1 5176 5392 -754 1859 156 0 4 chr1 35055500 35055776 -207608577 + AluJb SINE Alu 1 275 -37 273 298 24 0 chr1 35055922 35056006 -207608347 + L1ME4a LINE L1 5512 5597 -524 455 305 51 23 chr1 35056018 35056195 -207608158 + L2 LINE L2 2902 3083 -189 488 278 32 0 chr1 35056222 35056348 -207608005 - HAL1 LINE L1 -1889 618 489 433 35 0 0 chr1 35056350 35056407 -207607946 - AluSx SINE Alu -9 303 247 1211 116 23 0 chr1 35056407 35056579 -207607774 - AluSx SINE Alu -136 176 1 484 257 117 11 chr1 35056585 35056764 -207607589 - HAL1 LINE L1 -2031 476 279 730 238 145 39 chr1 35056845 35057232 -207607121 + L1ME4a LINE L1 5599 6026 -95 239 313 209 36 chr1 35057311 35057445 -207606908 + L3 LINE CR1 966 1076 -501 2484 94 0 0 chr1 35057445 35057752 -207606601 + AluSx SINE Alu 1 307 -5 239 313 209 36 chr1 35057752 35057924 -207606429 + L3 LINE CR1 1076 1325 -252 408 222 92 59 chr1 35058430 35058583 -207605770 - MIR3 SINE MIR -49 159 2 2547 155 44 11 chr1 35058779 35059231 -207605122 + MLT1C LTR MaLR 1 467 0 341 322 130 0 chr1 35059867 35060013 -207604340 - MIR SINE MIR -14 248 84 212 283 100 33 chr1 35060650 35060770 -207603583 + L2 LINE L2 2920 3047 -225 485 290 77 0 chr1 35063728 35063897 -207600456 + MIR SINE MIR 9 190 -72 280 243 14 0 chr1 35064167 35064241 -207600112 + G-rich Low_complexity Low_complexity 3 77 0 252 310 146 53 chr1 35064916 35065197 -207599156 - L2 LINE L2 -25 3247 2941 486 257 117 28 chr1 35065293 35065472 -207598881 + MIR SINE MIR 63 257 -5 189 111 22 89 chr1 35065938 35065983 -207598370 - MER5A DNA MER1_type -62 127 86 303 277 176 85 chr1 35066375 35066652 -207597701 + L2 LINE L2 2812 3133 -139 955 144 29 0 chr1 35066652 35066826 -207597527 - L1MB2 LINE L1 -2 6169 5991 303 277 176 85 chr1 35066826 35066923 -207597430 + L2 LINE L2 3133 3220 -52 301 104 0 0 chr1 35066965 35067013 -207597340 - MADE1 DNA Mariner 0 80 33 1104 212 137 43 chr1 35067013 35067202 -207597151 - L2 LINE L2 -21 3292 3122 2484 86 0 3 chr1 35067202 35067506 -207596847 - AluSc SINE Alu -6 303 1 1104 212 137 43 chr1 35067506 35067891 -207596462 - L2 LINE L2 -191 3122 2658 1442 163 123 21 chr1 35068278 35068603 -207595750 - MLT1A1 LTR MaLR -4 361 4 433 205 291 0 chr1 35069343 35069494 -207594859 + LTR33 LTR ERVL 3 197 -324 456 211 0 21 chr1 35069561 35069656 -207594697 + LTR33 LTR ERVL 429 521 0 230 198 25 0 chr1 35070584 35070665 -207593688 + (CCCCAG)n Simple_repeat Simple_repeat 4 86 0 736 215 74 6 chr1 35072434 35072597 -207591756 - MIR SINE MIR -14 248 75 491 279 29 7 chr1 35072629 35072769 -207591584 - MIR SINE MIR 0 262 120 208 222 0 0 chr1 35072792 35072828 -207591525 + MIR SINE MIR 224 259 -3 257 300 211 0 chr1 35072836 35072926 -207591427 - MIR SINE MIR -140 122 14 437 304 30 0 chr1 35072993 35073128 -207591225 - MIR SINE MIR -80 182 44 301 245 338 0 chr1 35073491 35073630 -207590723 + L2 LINE L2 2571 2756 -558 538 253 41 20 chr1 35073687 35073833 -207590520 + L2 LINE L2 2925 3073 -240 1086 165 0 0 chr1 35073863 35074033 -207590320 - AluJb SINE Alu -14 298 129 467 185 169 79 chr1 35074037 35074226 -207590127 + L2 LINE L2 3108 3313 0 366 270 124 15 chr1 35074503 35074640 -207589713 + MIR SINE MIR 13 164 -98 582 227 76 67 chr1 35076091 35076316 -207588037 - L1MC4a LINE L1 -1892 5916 5690 470 200 45 18 chr1 35076558 35076668 -207587685 - MER94 DNA DNA -20 114 2 536 298 85 11 chr1 35076721 35076909 -207587444 - MIR SINE MIR -29 233 32 795 279 233 5 chr1 35077105 35077517 -207586836 + L2 LINE L2 1797 2302 -1012 1348 269 85 44 chr1 35077611 35078457 -207585896 - L1MC4a LINE L1 -743 5403 5039 658 75 0 0 chr1 35078482 35078562 -207585791 - MADE1 DNA Mariner 0 80 1 488 308 91 10 chr1 35078563 35078875 -207585478 + L2 LINE L2 2714 3064 -249 206 305 0 26 chr1 35079154 35079305 -207585048 + (TGG)n Simple_repeat Simple_repeat 3 149 0 247 236 0 92 chr1 35079340 35079535 -207584818 + (TGG)n Simple_repeat Simple_repeat 3 179 0 2854 253 58 96 chr1 35080271 35081128 -207583225 + L2 LINE L2 1477 2365 -948 289 103 0 118 chr1 35081128 35081196 -207583157 + MER53 DNA DNA 1 60 -129 2854 253 58 96 chr1 35081196 35081225 -207583128 + L2 LINE L2 2365 2394 -919 2522 58 0 3 chr1 35081225 35081535 -207582818 + AluSc SINE Alu 1 309 0 2854 253 58 96 chr1 35081535 35082419 -207581934 + L2 LINE L2 2394 3313 0 197 146 24 24 chr1 35082911 35082952 -207581401 - L3 LINE CR1 -855 722 682 195 325 38 0 chr1 35082941 35083021 -207581332 - L2 LINE L2 -867 2447 2365 * 2091 112 16 0 chr1 35083115 35083419 -207580934 - L1PB2 LINE L1 -3 6148 5840 180 0 0 0 chr1 35083427 35083447 -207580906 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3735 55 4 0 chr1 35083456 35083910 -207580443 - L1PA8 LINE L1 -9 6163 5708 655 298 66 41 chr1 35084125 35084210 -207580143 - L2 LINE L2 -972 2342 2261 3307 198 10 31 chr1 35084210 35084763 -207579590 + L1MB4 LINE L1 5513 6051 -129 1502 111 134 15 chr1 35084763 35085025 -207579328 + AluSg SINE Alu 1 293 -17 3307 198 10 31 chr1 35085025 35085153 -207579200 + L1MB4 LINE L1 6051 6180 0 655 298 66 41 chr1 35085153 35085386 -207578967 - L2 LINE L2 -1053 2261 2016 441 251 52 52 chr1 35085390 35085601 -207578752 - MLT1K LTR MaLR 0 588 378 1006 332 128 23 chr1 35085861 35086714 -207577639 - L2 LINE L2 -1319 1995 1054 436 347 8 0 chr1 35086738 35086862 -207577491 - L2 LINE L2 -10 3262 3138 473 330 116 23 chr1 35087075 35087591 -207576762 + L2 LINE L2 1688 2251 -1063 21 0 0 0 chr1 35087787 35087808 -207576545 + AT_rich Low_complexity Low_complexity 1 21 0 246 211 174 28 chr1 35088376 35088485 -207575868 + L2 LINE L2 2198 2322 -992 3621 285 150 30 chr1 35088494 35088581 -207575772 - L2 LINE L2 -10 3303 3228 2569 45 0 0 chr1 35088581 35088890 -207575463 - AluY SINE Alu -2 309 1 3621 285 150 30 chr1 35088890 35091213 -207573140 - L2 LINE L2 -85 3228 600 808 310 203 10 chr1 35091215 35091998 -207572355 + L2 LINE L2 2315 3252 -20 211 327 173 5 chr1 35092021 35092229 -207572124 - L2 LINE L2 -2468 846 604 589 171 90 0 chr1 35092736 35092847 -207571506 + LTR16A1 LTR ERVL 1 121 -336 292 186 0 17 chr1 35093053 35093112 -207571241 + LTR16A1 LTR ERVL 400 457 0 192 282 207 41 chr1 35093445 35093764 -207570589 - L2 LINE L2 -87 3185 2814 221 337 86 27 chr1 35093864 35094235 -207570118 - L2 LINE L2 -710 2604 2212 318 309 105 12 chr1 35096037 35096199 -207568154 - MIR SINE MIR -81 181 5 361 292 117 15 chr1 35096978 35097115 -207567238 + L2 LINE L2 3121 3271 -1 284 264 275 6 chr1 35098180 35098358 -207565995 - MIR SINE MIR -3 259 34 242 347 65 42 chr1 35098630 35098846 -207565507 - MIR SINE MIR -11 251 31 583 295 80 21 chr1 35099829 35100066 -207564287 - MIR SINE MIR 0 262 12 1077 247 8 4 chr1 35101103 35101342 -207563011 - MIR SINE MIR -1 261 22 517 238 135 12 chr1 35102285 35102455 -207561898 + MIR SINE MIR 43 241 -21 197 254 17 17 chr1 35102470 35102529 -207561824 + MIR SINE MIR 194 252 -10 332 190 50 60 chr1 35102941 35103041 -207561312 + L2 LINE L2 3213 3311 -2 350 305 34 0 chr1 35103213 35103331 -207561022 - L2 LINE L2 -221 3051 2930 182 269 30 15 chr1 35103424 35103491 -207560862 - L2 LINE L2 -497 2817 2750 3592 195 20 0 chr1 35103576 35104216 -207560137 + MER82 DNA MER2_type 1 653 0 695 264 6 0 chr1 35104475 35104634 -207559719 - MIR SINE MIR -86 176 17 385 332 81 44 chr1 35104710 35104863 -207559490 - L2 LINE L2 0 3313 3167 378 0 0 0 chr1 35104863 35104905 -207559448 + (CA)n Simple_repeat Simple_repeat 2 43 0 385 332 81 44 chr1 35104905 35105046 -207559307 - L2 LINE L2 -146 3167 3008 790 148 136 12 chr1 35105310 35105472 -207558881 + MSTD LTR MaLR 1 182 -214 388 260 53 21 chr1 35105635 35105794 -207558559 + MIR SINE MIR 35 153 -55 1826 228 37 5 chr1 35106548 35106952 -207557401 + LTR16C LTR ERVL 75 491 0 401 299 92 64 chr1 35107044 35107468 -207556885 + MLT1K LTR MaLR 135 570 -18 295 149 0 0 chr1 35107500 35107547 -207556806 + L2 LINE L2 3261 3307 -6 199 297 44 44 chr1 35107546 35107637 -207556716 + MIR SINE MIR 102 192 -70 * 1235 195 90 100 chr1 35107648 35108048 -207556305 - MSTD LTR MaLR 0 396 1 633 270 88 5 chr1 35108370 35108574 -207555779 + Charlie8 DNA MER1_type 1 221 -2196 454 317 60 16 chr1 35108611 35108794 -207555559 - MIR SINE MIR -71 191 1 182 280 168 14 chr1 35109174 35109317 -207555036 - L2 LINE L2 -907 2407 2243 386 263 81 0 chr1 35109808 35109907 -207554446 - MIR SINE MIR -134 128 22 458 73 0 0 chr1 35109907 35109975 -207554378 - L1PA4 LINE L1 0 6155 6088 538 164 217 13 chr1 35110249 35110401 -207553952 + L1MD3 LINE L1 7813 7995 0 393 197 141 13 chr1 35110703 35110858 -207553495 - MIR SINE MIR -3 259 76 422 278 167 0 chr1 35111287 35111449 -207552904 + MIR SINE MIR 1 189 -73 207 139 0 0 chr1 35111715 35111751 -207552602 + (TG)n Simple_repeat Simple_repeat 1 36 0 299 261 235 17 chr1 35112495 35112614 -207551739 - MIR SINE MIR -20 242 98 1672 178 196 60 chr1 35112726 35112814 -207551539 - MLT1F1 LTR MaLR -23 544 469 1358 192 30 15 chr1 35112814 35113085 -207551268 + ORSL DNA AcHobo 1 275 0 1672 178 196 60 chr1 35113085 35113475 -207550878 - MLT1F1 LTR MaLR -98 469 1 457 314 101 16 chr1 35113480 35113738 -207550615 + L2 LINE L2 3034 3313 0 203 343 29 19 chr1 35114515 35114620 -207549733 - L2 LINE L2 -467 2847 2742 570 345 45 39 chr1 35115633 35115848 -207548505 + L2 LINE L2 2913 3125 -147 261 0 0 0 chr1 35115848 35115877 -207548476 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr1 35115876 35115910 -207548443 + (TG)n Simple_repeat Simple_repeat 2 35 0 570 345 45 39 chr1 35115877 35116051 -207548302 + L2 LINE L2 3125 3271 -1 471 296 47 6 chr1 35116907 35117079 -207547274 + MIR SINE MIR 17 195 -67 535 248 38 25 chr1 35117087 35117244 -207547109 + MER5B DNA MER1_type 20 178 0 825 176 43 53 chr1 35117603 35117791 -207546562 - MER5A DNA MER1_type -3 186 1 199 298 144 29 chr1 35118526 35118630 -207545723 + MIR3 SINE MIR 84 199 -9 207 189 0 0 chr1 35118802 35118855 -207545498 + (TA)n Simple_repeat Simple_repeat 1 53 0 955 255 9 9 chr1 35118968 35119184 -207545169 - MIR SINE MIR 0 262 47 2222 125 0 0 chr1 35119320 35119632 -207544721 - AluSx SINE Alu 0 312 1 221 271 197 8 chr1 35120599 35120721 -207543632 + L2 LINE L2 2868 3012 -260 223 312 13 0 chr1 35120844 35120921 -207543432 + L2 LINE L2 3182 3259 -13 180 0 0 0 chr1 35120921 35120941 -207543412 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 545 294 139 5 chr1 35121223 35121262 -207543091 + MIR SINE MIR 31 63 -199 2049 127 0 0 chr1 35121262 35121553 -207542800 + AluSg SINE Alu 1 291 -19 545 294 139 5 chr1 35121553 35121714 -207542639 + MIR SINE MIR 63 258 -4 281 182 0 18 chr1 35121891 35121946 -207542407 + L2 LINE L2 3210 3263 -9 586 251 50 6 chr1 35122050 35122229 -207542124 + L2 LINE L2 3123 3309 -4 1863 190 199 2 chr1 35122253 35122675 -207541678 - MLT1D LTR MaLR 0 505 1 839 256 61 8 chr1 35123394 35123410 -207540943 - MIR SINE MIR -2 260 246 2030 80 6 98 chr1 35123410 35123737 -207540616 + AluSg SINE Alu 1 297 -13 839 256 61 8 chr1 35123737 35123966 -207540387 - MIR SINE MIR -16 246 2 2325 119 73 14 chr1 35124025 35124369 -207539984 + THE1B LTR MaLR 1 364 0 511 282 50 22 chr1 35124846 35125027 -207539326 - MIR SINE MIR -59 203 18 981 301 128 13 chr1 35125317 35125435 -207538918 - L2 LINE L2 -5 3308 3205 955 171 36 99 chr1 35125435 35125657 -207538696 + MER3 DNA MER1_type 1 208 -1 981 301 128 13 chr1 35125657 35126333 -207538020 - L2 LINE L2 -108 3205 2396 227 279 22 34 chr1 35126620 35126799 -207537554 + (TG)n Simple_repeat Simple_repeat 1 177 0 2092 122 7 0 chr1 35128599 35128903 -207535450 - AluSx SINE Alu -6 306 1 980 236 23 34 chr1 35128967 35129230 -207535123 + MIR SINE MIR 3 262 0 845 275 74 30 chr1 35129331 35129695 -207534658 - L1MC4a LINE L1 -1880 5928 5549 806 234 29 0 chr1 35130092 35130263 -207534090 + MLT1G1 LTR MaLR 2 177 -418 337 252 87 0 chr1 35130260 35130363 -207533990 + MLT1G LTR MaLR 479 590 0 * 482 313 17 34 chr1 35130403 35130579 -207533774 - MER5B DNA MER1_type 0 178 6 499 280 180 5 chr1 35130593 35130782 -207533571 + MIR SINE MIR 19 240 -22 361 203 25 25 chr1 35131582 35131661 -207532692 + MIR3 SINE MIR 76 154 -54 419 178 33 0 chr1 35131755 35131845 -207532508 + MER117 DNA MER1_type 55 147 -50 24 32 0 0 chr1 35131978 35132009 -207532344 + AT_rich Low_complexity Low_complexity 1 31 0 438 248 0 83 chr1 35132294 35132451 -207531902 - L1ME3 LINE L1 -5 6157 6014 722 281 79 30 chr1 35132461 35132931 -207531422 - L1MC4a LINE L1 -768 5378 4886 494 236 28 14 chr1 35133186 35133330 -207531023 - L1ME4a LINE L1 -11 6110 5965 269 26 26 0 chr1 35133333 35133371 -207530982 + (CA)n Simple_repeat Simple_repeat 1 39 0 1043 144 11 6 chr1 35133641 35133815 -207530538 + AluSg/x SINE Alu 137 311 -1 674 125 9 0 chr1 35133817 35133929 -207530424 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 471 271 101 43 chr1 35134066 35134537 -207529816 - L1ME4a LINE L1 -207 5963 5441 709 220 93 20 chr1 35134537 35134819 -207529534 - LTR33A LTR ERVL 0 684 292 667 212 224 29 chr1 35134871 35135112 -207529241 - LTR50 LTR ERVL -507 288 1 354 238 156 38 chr1 35135129 35135289 -207529064 - L1ME LINE L1 -367 5754 5576 341 349 40 8 chr1 35136379 35136505 -207527848 + L2 LINE L2 3184 3313 0 249 254 45 0 chr1 35137044 35137111 -207527242 - MIR SINE MIR -71 137 68 206 339 0 0 chr1 35137103 35137165 -207527188 - MIR SINE MIR 0 262 201 * 354 222 55 3 chr1 35137548 35137644 -207526709 - MER5A DNA MER1_type -80 98 9 487 278 127 24 chr1 35138155 35138367 -207525986 - MIR SINE MIR -6 256 23 455 281 30 7 chr1 35138524 35138659 -207525694 + MLT1J LTR MaLR 33 170 -341 485 238 66 48 chr1 35138685 35138921 -207525432 + MLT1J LTR MaLR 224 503 -8 268 268 52 21 chr1 35138989 35139086 -207525267 + MER5B DNA MER1_type 60 159 -19 3389 49 2 7 chr1 35139353 35139780 -207524573 + L1PA8 LINE L1 5747 6171 -1 567 299 69 23 chr1 35139848 35140065 -207524288 - MIR SINE MIR -2 260 34 253 254 42 14 chr1 35141130 35141201 -207523152 - L2 LINE L2 0 3313 3241 304 299 82 22 chr1 35141334 35141468 -207522885 + L2 LINE L2 2932 3073 -199 361 250 10 29 chr1 35141534 35141638 -207522715 - MIR SINE MIR -149 113 12 787 282 26 18 chr1 35141839 35142066 -207522287 - MIR SINE MIR -31 231 3 268 287 47 118 chr1 35142089 35142427 -207521926 - L2 LINE L2 -44 3228 2915 2023 111 12 49 chr1 35144064 35144388 -207519965 + AluSx SINE Alu 1 312 0 180 302 104 10 chr1 35145255 35145351 -207519002 - MIR SINE MIR -2 260 156 790 242 161 51 chr1 35145356 35145748 -207518605 + MLT1J2 LTR MaLR 16 450 0 469 204 39 0 chr1 35145764 35145867 -207518486 - MIR SINE MIR -109 153 47 188 318 206 29 chr1 35145939 35146288 -207518065 - L2 LINE L2 -1198 2116 1706 964 280 85 33 chr1 35146682 35147166 -207517187 + MLT1J LTR MaLR 2 448 -2 713 253 40 8 chr1 35147544 35147746 -207516607 - MLT1L LTR MaLR 0 615 382 308 323 25 38 chr1 35148317 35148475 -207515878 + L2 LINE L2 2619 2774 -540 503 303 98 41 chr1 35148746 35148990 -207515363 + MIR SINE MIR 5 262 0 869 236 121 43 chr1 35149023 35149345 -207515008 + MER7A DNA MER2_type 2 346 0 2207 92 0 10 chr1 35149541 35149846 -207514507 - AluSx SINE Alu -6 306 5 1407 160 38 48 chr1 35149973 35150246 -207514107 + MER33 DNA MER1_type 3 274 -2311 2193 83 10 3 chr1 35150246 35150546 -207513807 + AluSx SINE Alu 1 302 -10 1407 160 38 48 chr1 35150546 35150585 -207513768 + MER33 DNA MER1_type 274 312 -12 536 296 109 30 chr1 35151018 35151248 -207513105 + MIR SINE MIR 2 249 -13 268 275 40 27 chr1 35152550 35152699 -207511654 + L1ME LINE L1 5622 5772 -349 262 188 0 62 chr1 35152994 35153058 -207511295 + MER69 DNA AcHobo 2376 2435 -91 182 304 139 25 chr1 35153110 35153189 -207511164 - L3 LINE CR1 -3 1574 1487 * 230 314 41 41 chr1 35153169 35153290 -207511063 - L2 LINE L2 -2 3270 3150 376 277 105 50 chr1 35153317 35153555 -207510798 - L3 LINE CR1 -62 1515 1265 422 290 55 75 chr1 35154243 35154401 -207509952 + MIR SINE MIR 57 212 -50 2034 117 3 3 chr1 35154401 35154701 -207509652 + AluSx SINE Alu 1 300 -12 422 290 55 75 chr1 35154701 35154742 -207509611 + MIR SINE MIR 212 252 -10 297 246 127 27 chr1 35154779 35154889 -207509464 - L3 LINE CR1 -489 1088 968 274 270 180 22 chr1 35155051 35155229 -207509124 - L1ME4a LINE L1 -223 5898 5693 1176 246 81 54 chr1 35155252 35155696 -207508657 - L3 LINE CR1 -636 941 486 439 291 35 7 chr1 35156150 35156291 -207508062 + MIR SINE MIR 52 196 -66 547 278 70 59 chr1 35156313 35156586 -207507767 + Charlie8 DNA MER1_type 1 276 -2141 209 231 0 19 chr1 35156731 35156783 -207507570 + MIR SINE MIR 105 155 -107 1009 249 14 5 chr1 35157995 35158208 -207506145 + MER58A DNA MER1_type 10 224 0 193 258 97 0 chr1 35158320 35158382 -207505971 + L2 LINE L2 1752 1819 -1495 423 217 93 39 chr1 35158605 35158734 -207505619 + MIR3 SINE MIR 15 150 -58 187 242 10 131 chr1 35159354 35159453 -207504900 - L2 LINE L2 -38 3234 3148 1298 165 139 11 chr1 35159465 35159732 -207504621 + AluJb SINE Alu 1 301 -11 265 321 24 0 chr1 35159962 35160046 -207504307 - MLT1K LTR MaLR -9 579 494 1046 256 122 48 chr1 35160396 35160829 -207503524 - L2 LINE L2 -4 3309 2845 306 234 196 9 chr1 35160949 35161056 -207503297 - MIR3 SINE MIR -67 141 15 2056 167 7 52 chr1 35161645 35162053 -207502300 + MLT1B LTR MaLR 1 390 0 443 275 135 34 chr1 35162144 35162351 -207502002 + L2 LINE L2 2827 3054 -218 348 306 43 11 chr1 35162603 35162795 -207501558 - LTR16A LTR ERVL -254 196 2 240 224 271 0 chr1 35163656 35163741 -207500612 - MIR SINE MIR -67 141 34 296 330 21 0 chr1 35164039 35164136 -207500217 + MER91A DNA MER1_type 57 155 -41 289 246 15 0 chr1 35164875 35164940 -207499413 + MIR SINE MIR 82 147 -115 356 299 19 19 chr1 35165039 35165146 -207499207 - MIR SINE MIR -1 261 155 186 43 0 0 chr1 35165680 35165703 -207498650 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2161 145 39 26 chr1 35165703 35165750 -207498603 - L1MB3 LINE L1 -1 6182 6137 2044 128 7 0 chr1 35165750 35166048 -207498305 - AluSx SINE Alu -12 300 1 2161 145 39 26 chr1 35166048 35166415 -207497938 - L1MB3 LINE L1 -46 6137 5763 494 301 27 7 chr1 35166463 35166609 -207497744 - MIR SINE MIR -107 155 7 406 285 62 21 chr1 35167701 35167845 -207496508 + MER91B DNA MER1_type 36 185 -5 462 281 131 50 chr1 35167861 35168082 -207496271 - MIR SINE MIR -14 248 10 420 216 144 18 chr1 35168160 35168327 -207496026 - MER5A DNA MER1_type -1 188 1 207 0 0 0 chr1 35168921 35168944 -207495409 + (CTCTG)n Simple_repeat Simple_repeat 3 25 0 473 208 119 0 chr1 35169136 35169237 -207495116 - MIR SINE MIR -78 184 72 3681 196 17 35 chr1 35169237 35170103 -207494250 + L1ME1 LINE L1 5319 6161 -5 225 348 116 13 chr1 35170247 35170402 -207493951 - MIR SINE MIR -26 236 66 542 261 45 40 chr1 35170636 35170812 -207493541 + MIR SINE MIR 45 221 -41 1324 167 32 39 chr1 35170887 35171168 -207493185 - L1MB4 LINE L1 0 6180 5902 1781 147 42 7 chr1 35171352 35171638 -207492715 + MLT1C LTR MaLR 145 440 -27 709 265 19 14 chr1 35171645 35171856 -207492497 + MLT1G LTR MaLR 32 243 -347 189 222 0 74 chr1 35172267 35172321 -207492032 - L2 LINE L2 -1 3312 3263 * 243 310 130 0 chr1 35172290 35172390 -207491963 - MIR SINE MIR -14 248 136 582 275 57 10 chr1 35173245 35173438 -207490915 - MIR SINE MIR -24 238 37 1763 157 0 17 chr1 35173683 35173976 -207490377 - AluJo SINE Alu -24 288 1 295 261 133 8 chr1 35174532 35174658 -207489695 + MIR SINE MIR 63 208 -54 290 179 0 64 chr1 35175180 35175258 -207489095 - L1MB7 LINE L1 0 6184 6112 317 333 32 0 chr1 35175720 35175846 -207488507 - L2 LINE L2 -18 3254 3125 214 298 0 0 chr1 35176027 35176074 -207488279 - L2 LINE L2 -36 3277 3231 358 241 43 26 chr1 35176104 35176220 -207488133 - MIR SINE MIR -31 231 114 1706 158 50 19 chr1 35176252 35176599 -207487754 + MSTA LTR MaLR 7 357 -75 7750 165 39 2 chr1 35176599 35177869 -207486484 + MSTA-int LTR MaLR 334 1651 0 1081 127 55 17 chr1 35177869 35178050 -207486303 + MSTA LTR MaLR 1 188 -240 1739 141 57 42 chr1 35178051 35178385 -207485968 + MST-int LTR MaLR 296 634 -1017 * 2854 222 48 30 chr1 35178383 35179473 -207484880 + L1ME1 LINE L1 5058 6162 -4 2255 200 66 28 chr1 35179490 35180064 -207484289 + L1ME1 LINE L1 5290 5885 -281 1206 178 5 5 chr1 35180094 35180307 -207484046 + AluJo SINE Alu 78 290 -22 563 207 216 29 chr1 35180307 35180515 -207483838 + L1ME1 LINE L1 5900 6146 -20 2403 292 46 50 chr1 35180518 35180619 -207483734 + L1M4 LINE L1 2963 3063 -3083 1280 157 19 5 chr1 35180619 35180835 -207483518 - MER20 DNA MER1_type 0 219 1 2403 292 46 50 chr1 35180835 35181667 -207482686 + L1M4 LINE L1 3063 3896 -2250 1630 160 216 17 chr1 35181667 35182024 -207482329 - MSTA LTR MaLR 0 428 1 2403 292 46 50 chr1 35182024 35182162 -207482191 + L1M4 LINE L1 3896 4033 -2113 2424 57 0 3 chr1 35182162 35182462 -207481891 - AluY SINE Alu -12 299 1 2403 292 46 50 chr1 35182462 35183101 -207481252 + L1M4 LINE L1 4033 4669 -1477 759 252 79 57 chr1 35183075 35183227 -207481126 + L1MC4a LINE L1 4353 4500 -1646 * 2028 112 4 0 chr1 35183227 35183505 -207480848 + AluSq SINE Alu 1 279 -34 306 0 0 0 chr1 35183509 35183543 -207480810 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 759 252 79 57 chr1 35183543 35184055 -207480298 + L1MC4a LINE L1 4502 5037 -1109 580 270 153 5 chr1 35184085 35184281 -207480072 - MIR SINE MIR -27 235 11 418 292 69 0 chr1 35184301 35184503 -207479850 + L1MC4a LINE L1 5063 5278 -868 382 141 12 82 chr1 35184551 35184624 -207479729 + THE1C LTR MaLR 3 69 -295 3134 193 63 61 chr1 35184624 35186010 -207478343 - MER52A LTR ERV1 0 1278 17 1444 158 65 24 chr1 35186011 35186303 -207478050 + THE1C LTR MaLR 72 375 0 726 276 75 67 chr1 35186303 35186888 -207477465 + L1MC4a LINE L1 5307 5817 -345 * 3769 171 92 76 chr1 35186880 35187932 -207476421 + L1MD2 LINE L1 5200 6274 -85 2355 116 33 30 chr1 35187932 35188295 -207476058 - THE1B LTR MaLR 0 364 1 3769 171 92 76 chr1 35188295 35188380 -207475973 + L1MD2 LINE L1 6274 6356 -3 186 227 0 0 chr1 35188835 35188879 -207475474 + L2 LINE L2 2914 2957 -357 259 276 13 0 chr1 35189032 35189118 -207475235 + L2 LINE L2 2899 2985 -328 270 275 0 25 chr1 35189196 35189276 -207475077 + L2 LINE L2 3160 3237 -76 371 267 19 19 chr1 35190483 35190588 -207473765 - MIR SINE MIR -1 261 157 333 343 22 17 chr1 35190662 35190843 -207473510 + MLT2E LTR ERVL 33 214 -414 363 248 0 53 chr1 35190971 35191084 -207473269 + LTR33A LTR ERVL 417 523 0 351 243 136 0 chr1 35191087 35191190 -207473163 - MIR SINE MIR -103 159 43 1458 172 12 120 chr1 35192739 35192776 -207471577 - MLT1A1 LTR MaLR 0 365 326 1984 126 9 9 chr1 35192776 35193093 -207471260 + L1PA13 LINE L1 5840 6156 -7 1458 172 12 120 chr1 35193093 35193462 -207470891 - MLT1A1 LTR MaLR -39 326 3 1139 209 23 119 chr1 35193955 35194585 -207469768 - MLT2B3 LTR ERVL -2 518 6 339 308 246 20 chr1 35194623 35194818 -207469535 - L2 LINE L2 -498 2816 2578 576 270 17 82 chr1 35194846 35195032 -207469321 - L2 LINE L2 -911 2403 2233 2254 105 0 0 chr1 35195032 35195338 -207469015 + AluSx SINE Alu 1 306 -6 576 270 17 82 chr1 35195338 35195384 -207468969 - L2 LINE L2 -1081 2233 2186 851 258 34 61 chr1 35195384 35195797 -207468556 - MLT1I LTR MaLR 0 409 38 344 158 0 14 chr1 35195885 35195951 -207468402 + Alu SINE Alu 7 51 -251 4378 104 28 26 chr1 35196613 35197003 -207467350 - MER39B LTR ERV1 0 653 260 1868 158 3 6 chr1 35197003 35197314 -207467039 - AluJb SINE Alu -2 310 1 4378 104 28 26 chr1 35197314 35197575 -207466778 - MER39B LTR ERV1 -393 260 1 374 243 164 13 chr1 35198082 35198234 -207466119 - MIR SINE MIR -80 182 8 1143 205 9 26 chr1 35198386 35198586 -207465767 - L1MC4 LINE L1 -1155 6887 6690 2013 86 72 0 chr1 35198586 35198865 -207465488 - AluSq SINE Alu -14 299 1 1143 205 9 26 chr1 35198865 35198893 -207465460 - L1MC4 LINE L1 -1352 6690 6663 253 304 135 83 chr1 35200750 35201039 -207463314 + L2 LINE L2 2938 3241 -31 307 245 75 21 chr1 35201163 35201257 -207463096 + MER5A DNA MER1_type 14 112 -77 433 292 180 0 chr1 35201338 35201499 -207462854 + MER91A DNA MER1_type 1 190 -6 240 258 13 142 chr1 35201581 35201814 -207462539 + L2 LINE L2 2860 3062 -210 203 264 135 98 chr1 35202386 35202509 -207461844 + MIR3 SINE MIR 21 153 -55 718 292 10 5 chr1 35202509 35202701 -207461652 - MER117 DNA MER1_type -1 196 4 203 264 135 98 chr1 35202701 35202740 -207461613 + MIR3 SINE MIR 153 189 -19 357 24 0 0 chr1 35203296 35203338 -207461015 + (TG)n Simple_repeat Simple_repeat 1 42 0 334 293 100 61 chr1 35204006 35204235 -207460118 - L2 LINE L2 -225 3047 2810 2124 110 3 10 chr1 35205324 35205632 -207458721 + AluSg SINE Alu 1 306 -4 1841 162 3 0 chr1 35205864 35206166 -207458187 - AluSx SINE Alu -9 303 1 188 290 81 0 chr1 35206417 35206479 -207457874 + MIR SINE MIR 114 180 -82 677 223 4 19 chr1 35206907 35207169 -207457184 + CT-rich Low_complexity Low_complexity 1 258 0 832 228 6 0 chr1 35207177 35207339 -207457014 - AluJb SINE Alu -17 295 133 192 303 15 15 chr1 35207407 35207473 -207456880 - MIR SINE MIR -163 99 34 613 234 104 43 chr1 35208014 35208245 -207456108 - MIR SINE MIR -14 248 4 206 123 0 140 chr1 35208282 35208339 -207456014 - L2 LINE L2 -219 3053 3005 184 224 86 17 chr1 35208870 35208928 -207455425 + L2 LINE L2 3188 3249 -64 772 265 85 9 chr1 35209229 35209452 -207454901 + MIR SINE MIR 1 240 -22 355 286 135 28 chr1 35209887 35210139 -207454214 + L3 LINE CR1 1191 1469 -108 437 293 46 46 chr1 35210155 35210329 -207454024 - MIR SINE MIR -8 254 81 206 304 120 22 chr1 35210340 35210432 -207453921 + MIR SINE MIR 58 158 -104 694 225 12 0 chr1 35210664 35210824 -207453529 + MER103 DNA DNA 2 163 -3 650 261 22 0 chr1 35212571 35212709 -207451644 + MIR SINE MIR 8 148 -114 477 272 69 139 chr1 35212777 35213258 -207451095 - L2 LINE L2 -5 3267 2821 497 269 42 24 chr1 35214097 35214264 -207450089 - MIR SINE MIR -70 192 23 196 232 145 0 chr1 35214512 35214581 -207449772 + L2 LINE L2 3006 3084 -188 708 292 170 18 chr1 35214773 35215156 -207449197 - L2 LINE L2 -337 2977 2537 1947 147 3 3 chr1 35215202 35215515 -207448838 + AluSq SINE Alu 1 313 0 624 202 9 0 chr1 35215688 35215797 -207448556 + FLAM_A SINE Alu 1 110 -32 216 0 0 0 chr1 35215807 35215831 -207448522 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 195 237 0 0 chr1 35216259 35216297 -207448056 - L2 LINE L2 -3 3310 3273 481 276 55 0 chr1 35216451 35216578 -207447775 - MIR SINE MIR -81 181 48 190 333 0 29 chr1 35216624 35216693 -207447660 - L2 LINE L2 -555 2759 2693 303 28 0 0 chr1 35217100 35217136 -207447217 + (TG)n Simple_repeat Simple_repeat 2 37 0 420 263 90 15 chr1 35217821 35217954 -207446399 + MIR SINE MIR 12 154 -108 2522 219 66 57 chr1 35218071 35218363 -207445990 - MER72 LTR ERV1 -2 720 432 2669 95 17 6 chr1 35218363 35218721 -207445632 - THE1B LTR MaLR -2 362 1 2522 219 66 57 chr1 35218721 35218857 -207445496 - MER72 LTR ERV1 -290 432 299 2223 105 0 0 chr1 35218857 35219161 -207445192 - AluSq SINE Alu -9 304 1 2522 219 66 57 chr1 35219161 35219445 -207444908 - MER72 LTR ERV1 -423 299 1 343 324 10 0 chr1 35220436 35220538 -207443815 + MIR SINE MIR 78 180 -82 286 29 0 0 chr1 35220539 35220573 -207443780 + LTR7 LTR ERV1 1 34 -416 16613 93 24 12 chr1 35220574 35223005 -207441348 + HERVH LTR ERV1 404 2987 -4726 863 162 20 0 chr1 35222999 35223147 -207441206 + HERVH LTR ERV1 3140 3290 -4423 * 3433 110 6 6 chr1 35223137 35223639 -207440714 + HERVH LTR ERV1 3492 3993 -3720 4268 155 1 3 chr1 35223642 35224301 -207440052 + HERVH LTR ERV1 4489 5146 -2567 1431 111 23 9 chr1 35224305 35224522 -207439831 + HERVH LTR ERV1 5600 5819 -1894 * 2453 98 48 13 chr1 35224520 35224899 -207439454 + HERVH LTR ERV1 7322 7713 0 1486 149 119 75 chr1 35224899 35225328 -207439025 + LTR7 LTR ERV1 1 448 -2 232 274 39 59 chr1 35225631 35225733 -207438620 - L2 LINE L2 -6 3307 3208 2778 99 0 0 chr1 35226652 35227016 -207437337 - THE1B LTR MaLR 0 364 1 2118 259 137 79 chr1 35228931 35228987 -207435366 + L2 LINE L2 970 1021 -2293 1779 144 82 25 chr1 35228987 35229342 -207435011 - THE1C LTR MaLR 0 375 1 2118 259 137 79 chr1 35229342 35230568 -207433785 + L2 LINE L2 1021 2327 -987 1552 156 0 66 chr1 35230568 35230765 -207433588 + LTR69 LTR ERVL 315 489 -99 1917 112 10 23 chr1 35230765 35231068 -207433285 - AluSx SINE Alu -13 299 1 1552 156 0 66 chr1 35231068 35231159 -207433194 + LTR69 LTR ERVL 489 584 -4 373 260 40 10 chr1 35231225 35231325 -207433028 - MLT1H LTR MaLR -202 347 245 1975 213 53 28 chr1 35231376 35231870 -207432483 - MER74B LTR ERVL -67 555 50 590 226 77 51 chr1 35231863 35232097 -207432256 - MLT1H LTR MaLR -295 254 15 * 333 351 192 3 chr1 35232115 35232456 -207431897 + L2 LINE L2 2689 3084 -229 930 210 0 0 chr1 35232509 35232685 -207431668 - MIR SINE MIR -1 261 86 507 229 117 45 chr1 35232680 35232859 -207431494 + L2 LINE L2 3122 3313 0 * 188 342 186 18 chr1 35232871 35233058 -207431295 + L2 LINE L2 2495 2649 -665 2205 111 0 0 chr1 35233058 35233356 -207430997 + AluSg SINE Alu 1 298 -12 188 342 186 18 chr1 35233356 35233566 -207430787 + L2 LINE L2 2649 2959 -355 186 191 0 0 chr1 35233657 35233699 -207430654 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 1695 174 23 0 chr1 35233762 35234061 -207430292 - AluSx SINE Alu -6 306 1 336 294 151 8 chr1 35234181 35234300 -207430053 - L2 LINE L2 -127 3145 3010 281 294 49 49 chr1 35234310 35234412 -207429941 + L2 LINE L2 3139 3240 -32 1459 141 122 11 chr1 35234434 35234696 -207429657 + AluSx SINE Alu 1 291 -21 589 157 104 22 chr1 35234717 35234851 -207429502 - L1MB3 LINE L1 -7 6176 6032 392 233 150 52 chr1 35235197 35235390 -207428963 + L2 LINE L2 3060 3271 -1 273 140 0 0 chr1 35237267 35237324 -207427029 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 257 333 11 11 chr1 35237327 35237414 -207426939 - L2 LINE L2 -1 3271 3185 1694 222 106 58 chr1 35237476 35237993 -207426360 + MLT1F LTR MaLR 1 542 0 1092 167 22 57 chr1 35238858 35239085 -207425268 - MER20 DNA MER1_type 0 219 1 338 220 347 0 chr1 35240034 35240207 -207424146 - MIR SINE MIR -10 252 20 1342 239 117 18 chr1 35240547 35240990 -207423363 + MLT1D LTR MaLR 19 505 0 233 326 77 22 chr1 35241165 35241346 -207423007 - L2 LINE L2 -472 2842 2652 254 319 14 0 chr1 35242304 35242373 -207421980 + MIR SINE MIR 8 77 -185 184 256 12 49 chr1 35242369 35242451 -207421902 + MIR SINE MIR 184 262 0 * 188 67 33 0 chr1 35242728 35242758 -207421595 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 666 302 21 92 chr1 35242759 35243424 -207420929 - L2 LINE L2 -2 3270 2656 357 330 0 52 chr1 35243801 35243916 -207420437 - L2 LINE L2 0 3272 3164 2549 58 0 0 chr1 35243934 35244243 -207420110 - AluY SINE Alu -2 309 1 25 51 0 0 chr1 35244255 35244294 -207420059 + AT_rich Low_complexity Low_complexity 1 39 0 718 266 5 22 chr1 35244388 35244572 -207419781 + LTR33 LTR ERVL 39 219 -302 402 235 25 25 chr1 35244641 35244760 -207419593 + LTR33 LTR ERVL 403 521 0 622 277 36 31 chr1 35244760 35244984 -207419369 - L2 LINE L2 -254 3059 2835 247 261 46 0 chr1 35245090 35245155 -207419198 - MIR SINE MIR -2 260 193 407 267 87 7 chr1 35245241 35245391 -207418962 + LTR33 LTR ERVL 1 162 -359 923 231 20 0 chr1 35245391 35245590 -207418763 - MIR SINE MIR -55 207 5 288 0 0 0 chr1 35247097 35247129 -207417224 + (TG)n Simple_repeat Simple_repeat 2 33 0 327 297 28 50 chr1 35247260 35247442 -207416911 + MER5B DNA MER1_type 1 178 0 326 241 18 0 chr1 35247713 35247825 -207416528 + (TTCA)n Simple_repeat Simple_repeat 4 117 0 262 280 0 13 chr1 35247849 35247924 -207416429 + (TTCA)n Simple_repeat Simple_repeat 2 75 0 230 180 16 0 chr1 35247942 35248003 -207416350 + (TTCA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr1 35248499 35248527 -207415826 + AT_rich Low_complexity Low_complexity 1 28 0 183 375 22 92 chr1 35248775 35248959 -207415394 - L2 LINE L2 -97 3175 3005 270 271 104 31 chr1 35249098 35249194 -207415159 - L2 LINE L2 -2 3270 3168 398 274 45 45 chr1 35251819 35251998 -207412355 - MLT1J2 LTR MaLR 0 450 272 622 154 73 0 chr1 35252021 35252144 -207412209 + L1MB3 LINE L1 6050 6181 -2 2118 102 0 0 chr1 35252154 35252486 -207411867 + AluSg SINE Alu 1 332 0 685 168 44 84 chr1 35252511 35252714 -207411639 - MER106B DNA MER1_type -468 591 397 340 185 54 54 chr1 35252773 35252865 -207411488 - MLT1I LTR MaLR -278 131 40 246 281 67 74 chr1 35253141 35253276 -207411077 + L2 LINE L2 3107 3240 -32 509 228 7 0 chr1 35253298 35253434 -207410919 + GA-rich Low_complexity Low_complexity 4 140 0 449 185 109 0 chr1 35253790 35253882 -207410471 - MIR SINE MIR -62 146 45 369 43 0 0 chr1 35253954 35254001 -207410352 + (TC)n Simple_repeat Simple_repeat 1 47 0 254 293 53 0 chr1 35254779 35254854 -207409499 + ERVL LTR ERVL 1365 1443 -4321 803 322 51 34 chr1 35255177 35255944 -207408409 + ERVL LTR ERVL 4415 5259 -505 1369 290 65 8 chr1 35256269 35256762 -207407591 + LTR33 LTR ERVL 1 521 0 924 83 0 0 chr1 35257056 35257177 -207407176 - AluSg/x SINE Alu -19 291 171 252 317 81 16 chr1 35257625 35257748 -207406605 - MIR SINE MIR -57 205 75 230 372 53 0 chr1 35257797 35257891 -207406462 - L2 LINE L2 -3 3310 3212 191 299 198 14 chr1 35257906 35258123 -207406230 - L2 LINE L2 -698 2616 2360 273 98 0 0 chr1 35258886 35258927 -207405426 + (TG)n Simple_repeat Simple_repeat 2 42 0 2054 54 8 8 chr1 35259569 35259830 -207404523 - AluY SINE Alu -14 297 37 302 267 104 79 chr1 35259854 35260234 -207404119 + MLT1G LTR MaLR 16 577 -4 2305 78 7 3 chr1 35260458 35260754 -207403599 - THE1A LTR MaLR 0 355 59 1042 182 0 0 chr1 35260827 35261003 -207403350 - MER58A DNA MER1_type 0 224 49 1632 164 116 3 chr1 35261994 35262305 -207402048 + MER7A DNA MER2_type 2 345 -1 1576 149 43 0 chr1 35262684 35262965 -207401388 + L1MA7 LINE L1 5994 6286 -5 258 237 17 0 chr1 35263174 35263233 -207401120 - MLT1K LTR MaLR 0 588 529 339 192 356 0 chr1 35263364 35263432 -207400921 - MER5A DNA MER1_type -6 183 140 2170 103 13 0 chr1 35263432 35263734 -207400619 - AluSc SINE Alu -3 306 1 339 192 356 0 chr1 35263734 35263769 -207400584 - MER5A DNA MER1_type -49 140 43 414 79 0 0 chr1 35263770 35263833 -207400520 + (CTG)n Simple_repeat Simple_repeat 1 63 0 619 287 13 0 chr1 35264939 35265096 -207399257 - L3 LINE CR1 -72 1505 1347 2111 92 10 3 chr1 35265647 35265940 -207398413 - AluSg SINE Alu -15 295 1 2051 127 0 13 chr1 35266046 35266361 -207397992 - AluSx SINE Alu -1 311 1 230 246 16 33 chr1 35266365 35266426 -207397927 + L2 LINE L2 3190 3249 -23 183 219 0 0 chr1 35267269 35267301 -207397052 - MIR SINE MIR -21 241 210 252 296 49 12 chr1 35267307 35267388 -207396965 + L2 LINE L2 3212 3295 -18 587 238 77 0 chr1 35268461 35268604 -207395749 + MIR3 SINE MIR 45 198 -10 22 0 0 0 chr1 35268675 35268697 -207395656 + AT_rich Low_complexity Low_complexity 1 22 0 1528 169 49 3 chr1 35268704 35268988 -207395365 - AluJb SINE Alu -15 297 1 466 223 45 9 chr1 35269098 35269210 -207395143 + MIR SINE MIR 35 150 -112 348 230 0 92 chr1 35270249 35270336 -207394017 - L2 LINE L2 -32 3281 3203 304 322 130 29 chr1 35270358 35270566 -207393787 - L2 LINE L2 -408 2906 2678 296 310 126 35 chr1 35270894 35271125 -207393228 - MIR SINE MIR -8 254 8 287 286 19 76 chr1 35271471 35271576 -207392777 + MIR SINE MIR 7 105 -157 532 264 90 0 chr1 35271593 35271760 -207392593 + MIR SINE MIR 81 262 0 1164 126 6 0 chr1 35271851 35272042 -207392311 - AluSg/x SINE Alu 0 306 115 913 278 121 3 chr1 35272473 35272829 -207391524 + L2 LINE L2 1715 2112 -1202 664 195 0 8 chr1 35273774 35273902 -207390451 - L1PA13 LINE L1 -5 6158 6032 1642 120 8 0 chr1 35273912 35274162 -207390191 - AluSx SINE Alu 0 312 61 685 311 98 3 chr1 35274166 35274513 -207389840 + L2 LINE L2 2691 3063 -250 635 279 50 41 chr1 35274565 35274906 -207389447 - L1MEd LINE L1 -5215 904 561 783 231 64 15 chr1 35275204 35275407 -207388946 + L2 LINE L2 3100 3312 -1 209 344 0 55 chr1 35276545 35276673 -207387680 - L2 LINE L2 -208 3064 2944 756 255 182 38 chr1 35276684 35277052 -207387301 + L2 LINE L2 2892 3312 -1 195 367 0 0 chr1 35277446 35277506 -207386847 + L3 LINE CR1 1516 1575 -2 310 347 33 8 chr1 35277866 35277987 -207386366 - L2 LINE L2 -4 3268 3145 1466 285 65 14 chr1 35278338 35278829 -207385524 - LTR33 LTR ERVL 0 521 6 1923 166 0 0 chr1 35278859 35279149 -207385204 - AluJb SINE Alu -22 290 1 305 237 10 41 chr1 35279230 35279327 -207385026 - MIR SINE MIR -112 150 57 828 144 30 30 chr1 35279329 35279461 -207384892 - FLAM_C SINE Alu 0 133 2 194 181 31 14 chr1 35280754 35280831 -207383522 - L2 LINE L2 -1 3312 3261 181 164 18 36 chr1 35281373 35281428 -207382925 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 2634 100 29 40 chr1 35281432 35281811 -207382542 + THE1C LTR MaLR 1 375 0 3417 209 1 33 chr1 35281824 35282485 -207381868 + MER82 DNA MER2_type 14 653 0 211 286 0 0 chr1 35283326 35283396 -207380957 + (TAA)n Simple_repeat Simple_repeat 2 71 0 802 204 63 11 chr1 35283611 35283802 -207380551 - MLT1A1 LTR MaLR 0 365 165 27 0 0 0 chr1 35283864 35283891 -207380462 + AT_rich Low_complexity Low_complexity 1 27 0 1442 106 0 19 chr1 35283891 35284098 -207380255 - L1PB1 LINE L1 -1 6150 5948 3439 193 33 68 chr1 35284098 35285077 -207379276 - MER97c DNA MER1_type? -28 1062 119 741 150 6 50 chr1 35285081 35285241 -207379112 + L1MA8 LINE L1 5970 6122 -169 1556 27 6 6 chr1 35285243 35285426 -207378927 + AluY SINE Alu 1 183 -128 291 193 136 11 chr1 35285506 35285594 -207378759 - MER97c DNA MER1_type? -991 99 1 1673 167 0 43 chr1 35285817 35286122 -207378231 - AluJo SINE Alu -20 292 1 248 276 9 19 chr1 35286148 35286253 -207378100 + CT-rich Low_complexity Low_complexity 2 105 0 204 167 0 0 chr1 35286265 35286313 -207378040 + (TCTCTG)n Simple_repeat Simple_repeat 4 51 0 404 213 234 0 chr1 35287339 35287480 -207376873 + L2 LINE L2 2856 3029 -284 42241 36 26 2 chr1 35287506 35292609 -207371744 + L1P LINE L1 1 5227 -919 4646 132 13 0 chr1 35292753 35293430 -207370923 + L1PA15 LINE L1 5480 6165 0 696 270 95 11 chr1 35293447 35293721 -207370632 - L1MC4 LINE L1 -27 8015 7719 2474 133 18 10 chr1 35293735 35294127 -207370226 - L1PA13 LINE L1 0 6163 5769 * 7751 55 0 7 chr1 35294119 35295435 -207368918 - L1PA8 LINE L1 -3 6169 4855 5699 183 54 8 chr1 35295535 35297280 -207367073 - L1MC2 LINE L1 -3 6341 4514 3352 177 18 66 chr1 35297281 35298067 -207366286 - L1MB8 LINE L1 -1 6988 6241 7965 227 38 16 chr1 35298077 35300200 -207364153 - L1MB8 LINE L1 -1592 5365 3196 1795 258 53 25 chr1 35300207 35300730 -207363623 - L1MB8 LINE L1 -6311 548 11 484 251 231 0 chr1 35301705 35301900 -207362453 - MIR SINE MIR -10 252 13 186 234 85 53 chr1 35301928 35302022 -207362331 + MIR SINE MIR 120 216 -46 237 208 56 14 chr1 35302162 35302234 -207362119 + L1MC4 LINE L1 7965 8039 -3 244 145 79 0 chr1 35302681 35302757 -207361596 + (TA)n Simple_repeat Simple_repeat 2 83 0 33 25 0 0 chr1 35303073 35303113 -207361240 + AT_rich Low_complexity Low_complexity 1 40 0 2257 107 0 3 chr1 35303852 35304150 -207360203 + AluSg SINE Alu 1 297 -13 1780 187 200 47 chr1 35304327 35304797 -207359556 - MLT1F LTR MaLR 0 542 1 317 238 0 0 chr1 35304940 35305003 -207359350 + MER91A DNA MER1_type 1 63 -77 2479 146 21 5 chr1 35305522 35305906 -207358447 + MLT1B LTR MaLR 1 390 0 2197 62 0 45 chr1 35306072 35306363 -207357990 + AluY SINE Alu 1 278 -33 2518 90 0 0 chr1 35306470 35306813 -207357540 - L1P LINE L1 -1333 4813 4471 12490 186 24 17 chr1 35306815 35309686 -207354667 - L1P4 LINE L1 -383 6436 3588 2200 104 10 0 chr1 35309686 35309975 -207354378 - AluSp SINE Alu -21 292 1 12490 186 24 17 chr1 35309975 35313396 -207350957 - L1P4 LINE L1 -3231 3588 4 1006 241 96 30 chr1 35313411 35313818 -207350535 - HAL1 LINE L1 -27 2480 2047 2686 246 184 26 chr1 35314011 35315255 -207349098 - HAL1 LINE L1 -396 2111 672 555 179 55 21 chr1 35316150 35316295 -207348058 + MER117 DNA MER1_type 1 150 -47 425 308 35 14 chr1 35316347 35316490 -207347863 - MER5A DNA MER1_type 0 189 44 541 298 34 21 chr1 35317238 35317290 -207347063 - MIR SINE MIR -4 258 208 1705 169 140 29 chr1 35317290 35317675 -207346678 - MSTC LTR MaLR 0 428 1 541 298 34 21 chr1 35317675 35317815 -207346538 - MIR SINE MIR -54 208 60 1664 262 125 21 chr1 35317815 35318350 -207346003 - MLT1E LTR MaLR -2 591 1 541 298 34 21 chr1 35318350 35318394 -207345959 - MIR SINE MIR -202 60 18 1024 321 27 25 chr1 35318895 35319311 -207345042 - L2 LINE L2 -407 2907 2488 4425 132 13 2 chr1 35319311 35319938 -207344415 + MER41B LTR ERV1 2 635 0 1024 321 27 25 chr1 35319938 35320076 -207344277 - L2 LINE L2 -826 2488 2352 979 298 109 20 chr1 35320181 35320630 -207343723 - L2 LINE L2 0 3313 2825 2873 151 4 26 chr1 35320634 35320740 -207343613 + L1MA8 LINE L1 5371 5478 -813 2276 108 16 0 chr1 35320740 35321047 -207343306 - AluSq SINE Alu 0 313 2 2873 151 4 26 chr1 35321047 35321444 -207342909 + L1MA8 LINE L1 5478 5863 -428 234 0 0 0 chr1 35321545 35321571 -207342782 + (A)n Simple_repeat Simple_repeat 1 26 0 500 340 20 0 chr1 35321572 35321725 -207342628 - MER91A DNA MER1_type -40 156 1 1246 254 83 38 chr1 35322417 35322814 -207341539 + LTR16C LTR ERVL 71 485 -6 1423 79 138 5 chr1 35323114 35323317 -207341036 - MER30 DNA MER1_type 0 230 1 1455 189 139 16 chr1 35323443 35323760 -207340593 + L1MD3 LINE L1 6654 7009 -986 226 155 69 69 chr1 35323788 35323846 -207340507 - MIR SINE MIR -87 175 118 394 326 94 33 chr1 35324958 35325351 -207339002 + L2 LINE L2 2441 2857 -457 569 257 171 2 chr1 35325596 35325802 -207338551 - MIR SINE MIR -36 226 4 1004 197 22 0 chr1 35325944 35326122 -207338231 + MER58A DNA MER1_type 43 224 0 1717 157 18 14 chr1 35326646 35326971 -207337382 + AluSx SINE Alu 1 326 0 225 289 0 0 chr1 35327522 35327574 -207336779 - MLT1K LTR MaLR -8 580 529 475 347 50 13 chr1 35328403 35328642 -207335711 + L3 LINE CR1 987 1234 -343 209 32 0 32 chr1 35329157 35329188 -207335165 + (TTA)n Simple_repeat Simple_repeat 3 32 0 192 250 0 0 chr1 35329194 35329234 -207335119 - L2 LINE L2 -31 3241 3202 792 285 113 43 chr1 35329299 35330155 -207334198 - L2 LINE L2 -52 3261 2353 261 259 167 0 chr1 35330450 35330558 -207333795 - L2 LINE L2 -9 3304 3179 455 303 35 0 chr1 35331904 35332046 -207332307 + MIR SINE MIR 109 255 -7 289 282 16 117 chr1 35332486 35332674 -207331679 - MIR SINE MIR -74 188 20 338 225 11 22 chr1 35332848 35332937 -207331416 - L3 LINE CR1 -75 1502 1415 921 223 22 0 chr1 35332949 35333133 -207331220 + MER5A DNA MER1_type 2 189 0 187 296 0 0 chr1 35333179 35333223 -207331130 + MIR SINE MIR 59 102 -160 209 145 81 113 chr1 35333239 35333266 -207331087 - MIR SINE MIR 0 262 236 2079 177 135 16 chr1 35333266 35333717 -207330636 + MLT1D LTR MaLR 1 505 0 209 145 81 113 chr1 35333717 35333751 -207330602 - MIR SINE MIR -26 236 203 639 214 2 0 chr1 35333787 35333924 -207330429 - MIR SINE MIR -61 147 63 189 74 0 0 chr1 35334637 35334664 -207329689 + (TG)n Simple_repeat Simple_repeat 1 27 0 441 271 85 0 chr1 35335673 35335791 -207328562 - MIR SINE MIR -73 189 62 183 226 0 38 chr1 35336114 35336167 -207328186 + MIR SINE MIR 56 106 -102 737 304 100 40 chr1 35336191 35336642 -207327711 + MLT1K LTR MaLR 4 481 -107 601 212 153 6 chr1 35336879 35337050 -207327303 - L1MB8 LINE L1 -1 6177 5978 22 35 0 0 chr1 35337071 35337100 -207327253 + AT_rich Low_complexity Low_complexity 1 29 0 2913 82 2 17 chr1 35337105 35337507 -207326846 - L1PA8A LINE L1 -27 6104 5709 2505 209 32 47 chr1 35337507 35337632 -207326721 - L1ME1 LINE L1 -196 6039 5914 3039 87 5 0 chr1 35337632 35338033 -207326320 + L1PA13 LINE L1 5757 6159 -4 2505 209 32 47 chr1 35338033 35338566 -207325787 - L1ME1 LINE L1 -321 5914 5391 293 194 30 0 chr1 35338564 35338631 -207325722 + L1M4 LINE L1 4934 5002 -1144 * 2155 237 52 10 chr1 35338629 35338660 -207325693 - L1ME1 LINE L1 -1206 5009 4981 500 0 0 16 chr1 35338660 35338721 -207325632 + (TTA)n Simple_repeat Simple_repeat 1 60 0 2155 237 52 10 chr1 35338721 35339309 -207325044 - L1ME1 LINE L1 -1234 4981 4356 2204 186 45 21 chr1 35339309 35339729 -207324624 + MSTB1 LTR MaLR 3 432 0 2155 237 52 10 chr1 35339729 35339799 -207324554 - L1ME1 LINE L1 -1859 4356 4290 1481 173 4 11 chr1 35339814 35340086 -207324267 - L1P LINE L1 -1344 4802 4533 4662 259 77 36 chr1 35340086 35340596 -207323757 - L1ME1 LINE L1 -2562 3653 3165 2494 83 0 3 chr1 35340596 35340908 -207323445 - AluY SINE Alu 0 311 1 4662 259 77 36 chr1 35340908 35341268 -207323085 - L1ME1 LINE L1 -3050 3165 2821 2302 62 0 0 chr1 35341268 35341540 -207322813 + L1PA4 LINE L1 5884 6155 0 4662 259 77 36 chr1 35341540 35344176 -207320177 - L1ME1 LINE L1 -3394 2821 34 349 290 99 30 chr1 35344184 35344358 -207319995 - MLT1J LTR MaLR -268 199 31 2551 189 2 21 chr1 35344476 35344910 -207319443 - MSTB LTR MaLR 0 426 1 339 270 0 30 chr1 35345237 35345337 -207319016 + L2 LINE L2 3214 3310 -3 2131 284 123 14 chr1 35345557 35346403 -207317950 + L2 LINE L2 1706 2643 -671 1904 151 33 101 chr1 35346417 35346450 -207317903 - L1MA7 LINE L1 -4 6287 6253 1417 199 115 13 chr1 35346450 35346762 -207317591 - MER2 DNA MER2_type 0 344 1 1904 151 33 101 chr1 35346762 35346905 -207317448 - L1MA7 LINE L1 -38 6253 6102 2717 10 0 10 chr1 35346905 35347207 -207317146 - AluYa5 SINE Alu -12 299 1 1904 151 33 101 chr1 35347207 35347513 -207316840 - L1MA7 LINE L1 -189 6102 5837 484 103 0 0 chr1 35347508 35347576 -207316777 + L1MA7 LINE L1 5790 5857 -434 * 890 316 79 22 chr1 35347586 35348169 -207316184 + L2 LINE L2 2698 3312 -1 342 400 35 0 chr1 35348960 35349160 -207315193 - L3 LINE CR1 -6 1571 1365 4708 148 44 37 chr1 35349160 35350302 -207314051 + L1PB4 LINE L1 4999 6144 -12 268 241 46 37 chr1 35350220 35350307 -207314046 + L1MA4A LINE L1 6189 6279 -24 * 2110 118 3 0 chr1 35350307 35350594 -207313759 - AluSq SINE Alu -24 289 2 268 241 46 37 chr1 35350594 35350614 -207313739 + L1MA4A LINE L1 6279 6297 -6 300 330 62 46 chr1 35350618 35350725 -207313628 - L3 LINE CR1 -202 1375 1262 1815 186 33 53 chr1 35350725 35351123 -207313230 + MLT1B LTR MaLR 1 390 0 300 330 62 46 chr1 35351123 35351209 -207313144 - L3 LINE CR1 -315 1262 1179 230 250 61 106 chr1 35351239 35351371 -207312982 - L3 LINE CR1 -470 1107 982 190 343 0 0 chr1 35351701 35351768 -207312585 - L3 LINE CR1 -1174 403 337 189 324 56 0 chr1 35351823 35351894 -207312459 + MIR3 SINE MIR 98 172 -36 576 40 0 0 chr1 35351913 35351988 -207312365 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 266 370 35 23 chr1 35352089 35352262 -207312091 - L3 LINE CR1 -1340 237 63 264 250 58 29 chr1 35352313 35352417 -207311936 - L3 LINE CR1 -827 750 644 755 216 0 34 chr1 35352938 35353086 -207311267 - MER5A DNA MER1_type -46 143 1 248 250 18 0 chr1 35353419 35353475 -207310878 + L3b LINE CR1 1350 1406 -177 321 312 145 0 chr1 35353626 35353764 -207310589 + MIR SINE MIR 98 255 -7 714 186 45 62 chr1 35354385 35354562 -207309791 + MER5B DNA MER1_type 5 178 0 323 396 50 8 chr1 35354956 35355216 -207309137 + L1ME3A LINE L1 5619 5889 -281 582 245 184 22 chr1 35356863 35357141 -207307212 - MLT1K LTR MaLR -58 530 208 415 273 43 56 chr1 35357384 35357545 -207306808 + MER5A DNA MER1_type 30 188 -1 2156 111 0 3 chr1 35357882 35358179 -207306174 - AluSg SINE Alu -14 296 1 565 307 35 13 chr1 35358428 35358659 -207305694 + MIR SINE MIR 17 252 -10 214 327 18 62 chr1 35359696 35359809 -207304544 - L2 LINE L2 -49 3223 3116 2052 170 20 12 chr1 35359962 35360303 -207304050 - MER2 DNA MER2_type 0 344 1 189 200 0 36 chr1 35360539 35360594 -207303759 + L2 LINE L2 3261 3313 0 767 270 59 31 chr1 35360946 35361168 -207303185 + MIR SINE MIR 11 238 -24 186 241 0 74 chr1 35361135 35361189 -207303164 + L2 LINE L2 3251 3300 -13 * 1868 214 45 24 chr1 35361336 35361761 -207302592 - MER63B DNA MER1_type -1 435 2 304 336 67 0 chr1 35361928 35362047 -207302306 - L3 LINE CR1 -1092 485 359 16901 143 18 10 chr1 35362059 35363315 -207301038 - L1PA11 LINE L1 0 6174 4929 2342 103 0 3 chr1 35363315 35363626 -207300727 + AluY SINE Alu 1 310 -1 16901 143 18 10 chr1 35363626 35365902 -207298451 - L1PA11 LINE L1 -1245 4929 2605 287 292 54 65 chr1 35365989 35366157 -207298196 - L2 LINE L2 -3 3310 3145 261 349 43 59 chr1 35366271 35366296 -207298057 - L2 LINE L2 -212 3060 3036 1166 309 94 29 chr1 35366296 35366817 -207297536 - LTR67 LTR ERVL 0 557 3 261 349 43 59 chr1 35366817 35366992 -207297361 - L2 LINE L2 -236 3036 2870 321 89 0 0 chr1 35366992 35367037 -207297316 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 349 43 59 chr1 35367037 35367190 -207297163 - L2 LINE L2 -402 2870 2716 435 239 0 94 chr1 35367357 35367516 -207296837 - L1MEc LINE L1 -4740 2085 1942 423 0 0 0 chr1 35367521 35367568 -207296785 + (TG)n Simple_repeat Simple_repeat 2 48 0 413 301 54 42 chr1 35367599 35368007 -207296346 - L1MEc LINE L1 -4842 1700 1288 264 156 0 0 chr1 35368018 35368063 -207296290 + AluJ SINE Alu 85 129 -173 1011 155 0 6 chr1 35368090 35368251 -207296102 + AluJ SINE Alu 127 286 -26 764 206 14 7 chr1 35368997 35369143 -207295210 - FRAM SINE Alu -30 146 1 285 295 170 9 chr1 35369837 35369949 -207294404 + MIR SINE MIR 3 132 -130 268 234 158 70 chr1 35370098 35370256 -207294097 + L2 LINE L2 3115 3286 -27 235 239 56 56 chr1 35370267 35370338 -207294015 + MIR SINE MIR 126 196 -66 591 287 104 42 chr1 35370346 35370701 -207293652 - LTR16C LTR ERVL 0 491 115 844 11 0 0 chr1 35371075 35371168 -207293185 - L1PA4 LINE L1 -2 6153 6061 309 51 0 0 chr1 35371658 35371697 -207292656 + (GA)n Simple_repeat Simple_repeat 1 39 0 225 362 6 17 chr1 35371927 35372101 -207292252 + CT-rich Low_complexity Low_complexity 1 172 0 180 0 0 0 chr1 35372106 35372126 -207292227 + (CA)n Simple_repeat Simple_repeat 1 20 0 350 299 84 12 chr1 35372592 35372759 -207291594 + MIR SINE MIR 44 222 -40 298 235 118 0 chr1 35372955 35373040 -207291313 - MIR SINE MIR -86 176 82 23 0 0 0 chr1 35373040 35373063 -207291290 + AT_rich Low_complexity Low_complexity 1 23 0 254 281 125 0 chr1 35373063 35373159 -207291194 - MIR SINE MIR -17 245 138 21 0 0 0 chr1 35373159 35373180 -207291173 + AT_rich Low_complexity Low_complexity 1 21 0 2762 157 8 19 chr1 35373180 35373652 -207290701 - L1PA16 LINE L1 -1 6165 5699 1915 183 42 13 chr1 35373652 35374034 -207290319 + L1 LINE L1 4446 4838 -1308 337 245 75 47 chr1 35374043 35374149 -207290204 - MIR SINE MIR -60 148 40 464 303 16 31 chr1 35374407 35374721 -207289632 + CT-rich Low_complexity Low_complexity 1 309 0 413 220 39 167 chr1 35375763 35376099 -207288254 - MLT1I LTR MaLR -47 362 70 567 309 111 5 chr1 35376256 35376463 -207287890 + MIR SINE MIR 32 260 -2 830 246 30 71 chr1 35376594 35376862 -207287491 - MIR SINE MIR 0 262 6 1990 146 20 0 chr1 35377677 35377972 -207286381 - AluSx SINE Alu -11 301 1 728 301 127 24 chr1 35379145 35379563 -207284790 + L1ME4a LINE L1 5427 5887 -234 241 311 14 0 chr1 35379776 35379850 -207284503 - L2 LINE L2 -219 3053 2979 386 165 13 0 chr1 35380384 35380463 -207283890 + GA-rich Low_complexity Low_complexity 2 81 0 763 211 15 15 chr1 35380683 35380816 -207283537 - FLAM_C SINE Alu 0 133 1 245 338 58 29 chr1 35382324 35382463 -207281890 + L3 LINE CR1 953 1095 -482 567 290 117 9 chr1 35382537 35382751 -207281602 + MIR SINE MIR 24 260 -2 264 319 101 22 chr1 35382756 35382894 -207281459 + L3 LINE CR1 1146 1294 -283 3839 193 49 53 chr1 35382896 35383961 -207280392 - MER97c DNA MER1_type? -3 1087 27 421 259 12 40 chr1 35384005 35384175 -207280178 + L3 LINE CR1 1346 1576 -1 2664 223 81 38 chr1 35385207 35386177 -207278176 + Charlie7 DNA MER1_type 1596 2607 -5 333 257 22 59 chr1 35386386 35386522 -207277831 + L2 LINE L2 2960 3090 -182 798 293 72 7 chr1 35386779 35387069 -207277284 + MER102b DNA MER1_type 33 341 0 461 335 56 38 chr1 35387508 35387848 -207276505 - LTR16C LTR ERVL 0 491 146 509 344 45 11 chr1 35387986 35388392 -207275961 - ERVL LTR ERVL -3021 2743 2294 781 350 61 50 chr1 35388543 35388858 -207275495 - ERVL LTR ERVL -3834 1162 852 2285 102 0 6 chr1 35388858 35389173 -207275180 - AluSq SINE Alu 0 313 1 781 350 61 50 chr1 35389173 35390007 -207274346 - ERVL LTR ERVL -4144 852 1 474 342 66 25 chr1 35390009 35390328 -207274025 - LTR16C LTR ERVL -2 489 158 388 104 13 13 chr1 35390698 35390775 -207273578 + (TG)n Simple_repeat Simple_repeat 1 77 0 264 354 12 0 chr1 35391340 35391422 -207272931 + MIR3 SINE MIR 78 160 -48 484 311 74 33 chr1 35391495 35391739 -207272614 - MIR SINE MIR -7 255 2 190 318 79 0 chr1 35391934 35391997 -207272356 + MIR SINE MIR 178 245 -17 279 235 150 103 chr1 35392022 35392256 -207272097 + MLT1K LTR MaLR 19 263 -325 415 345 0 7 chr1 35394066 35394205 -207270148 + MIR SINE MIR 8 145 -117 655 227 76 54 chr1 35394231 35394463 -207269890 + MIR SINE MIR 2 241 -21 207 341 24 0 chr1 35394779 35394861 -207269492 + L2 LINE L2 3106 3189 -83 * 238 286 9 30 chr1 35394857 35394974 -207269379 + MIR SINE MIR 8 117 -120 303 109 164 0 chr1 35395025 35395080 -207269273 - MER5A DNA MER1_type -77 112 49 446 244 150 0 chr1 35395175 35395302 -207269051 + MIR SINE MIR 109 254 -8 386 281 45 0 chr1 35395326 35395415 -207268938 + L2 LINE L2 3180 3272 0 293 344 39 16 chr1 35396158 35396286 -207268067 + L2 LINE L2 3138 3268 -4 342 232 73 12 chr1 35396468 35396550 -207267803 - MIR SINE MIR -113 149 63 2012 99 3 11 chr1 35396919 35397224 -207267129 - AluSp SINE Alu 0 303 1 503 240 27 20 chr1 35397225 35397371 -207266982 - MER103 DNA DNA -12 154 8 183 42 0 0 chr1 35397379 35397403 -207266950 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 291 233 86 60 chr1 35398179 35398295 -207266058 - MLT1H LTR MaLR -16 526 408 304 302 9 28 chr1 35398378 35398484 -207265869 - MLT1H LTR MaLR -341 208 105 574 181 76 82 chr1 35399932 35400103 -207264250 + MIR SINE MIR 29 198 -64 1639 231 87 102 chr1 35400105 35400655 -207263698 + MLT1E LTR MaLR 1 593 0 417 287 63 35 chr1 35400718 35400861 -207263492 - MIR SINE MIR -105 157 11 1398 177 127 36 chr1 35401169 35401531 -207262822 + MSTD LTR MaLR 1 395 -1 572 241 25 43 chr1 35402635 35402797 -207261556 - MER5B DNA MER1_type -1 177 19 1171 144 16 21 chr1 35403463 35403650 -207260703 - MER5A DNA MER1_type -3 186 1 189 107 0 0 chr1 35403677 35403705 -207260648 + (TG)n Simple_repeat Simple_repeat 2 29 0 644 306 45 54 chr1 35403758 35404000 -207260353 - MIR SINE MIR -1 261 22 428 326 0 0 chr1 35404028 35404157 -207260196 - L2 LINE L2 -9 3304 3176 231 266 62 0 chr1 35404836 35404900 -207259453 + L2 LINE L2 3205 3272 0 1754 120 76 7 chr1 35405301 35405577 -207258776 - AluSx SINE Alu -17 295 1 698 248 7 0 chr1 35406249 35406398 -207257955 + MIR SINE MIR 32 181 -81 238 264 0 0 chr1 35406471 35406524 -207257829 - L2 LINE L2 0 3313 3261 231 341 102 12 chr1 35407669 35407836 -207256517 - L2 LINE L2 -1514 1800 1619 291 140 0 0 chr1 35407836 35407886 -207256467 + (TG)n Simple_repeat Simple_repeat 1 50 0 196 53 53 0 chr1 35407986 35408024 -207256329 + (TTTAA)n Simple_repeat Simple_repeat 2 41 0 2033 111 0 3 chr1 35408024 35408312 -207256041 - AluSg SINE Alu -23 287 1 539 308 81 15 chr1 35408312 35408510 -207255843 - MIR SINE MIR -3 259 49 619 257 168 13 chr1 35408563 35408789 -207255564 - MIR SINE MIR 0 262 2 782 274 31 31 chr1 35410407 35410461 -207253892 - MIR SINE MIR 0 262 209 2095 176 113 22 chr1 35410461 35410920 -207253433 + MLT1D LTR MaLR 1 501 -4 782 274 31 31 chr1 35410920 35411124 -207253229 - MIR SINE MIR -52 210 4 1022 187 16 0 chr1 35412098 35412280 -207252073 + MER5A DNA MER1_type 1 185 -4 352 310 90 14 chr1 35413446 35413591 -207250762 - MIR SINE MIR -70 192 37 245 236 194 79 chr1 35413832 35413997 -207250356 - HAL1 LINE L1 -23 2484 2301 1152 256 113 53 chr1 35414108 35414752 -207249601 - HAL1 LINE L1 -423 2084 1402 747 279 50 76 chr1 35414779 35415486 -207248867 - HAL1 LINE L1 -1193 1314 627 1373 114 5 0 chr1 35415710 35415911 -207248442 - AluSg/x SINE Alu -16 296 95 321 260 31 31 chr1 35415914 35416010 -207248343 - HAL1 LINE L1 -1968 539 444 347 330 52 12 chr1 35416024 35416197 -207248156 - MLT1L LTR MaLR -18 597 418 563 274 157 0 chr1 35416272 35416425 -207247928 + MER5A DNA MER1_type 13 189 0 339 235 29 103 chr1 35416574 35416710 -207247643 - MLT1L LTR MaLR -456 159 34 310 290 109 49 chr1 35416941 35417124 -207247229 - HAL1 LINE L1 -2311 196 3 288 53 0 0 chr1 35417208 35417246 -207247107 + (TG)n Simple_repeat Simple_repeat 2 39 0 202 180 40 0 chr1 35417254 35417304 -207247049 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 312 215 77 54 chr1 35418582 35418712 -207245641 + L1ME4a LINE L1 5980 6112 -9 1233 110 34 64 chr1 35419261 35419497 -207244856 + AluSg/x SINE Alu 84 312 0 534 231 68 0 chr1 35420522 35420639 -207243714 - MIR SINE MIR -17 245 121 1083 251 149 17 chr1 35420819 35421229 -207243124 + LTR16C LTR ERVL 2 465 -26 181 259 17 52 chr1 35421716 35421774 -207242579 + MIR SINE MIR 91 146 -116 369 248 50 37 chr1 35422628 35422789 -207241564 + LTR33 LTR ERVL 109 271 -250 302 192 0 55 chr1 35423223 35423296 -207241057 + AluSc SINE Alu 94 162 -137 263 186 0 0 chr1 35423295 35423338 -207241015 + LTR33 LTR ERVL 479 521 0 * 258 136 0 0 chr1 35423755 35423799 -207240554 + (T)n Simple_repeat Simple_repeat 1 44 0 1445 166 46 33 chr1 35424741 35424863 -207239490 + AluJo SINE Alu 1 120 -192 288 77 0 0 chr1 35424863 35424902 -207239451 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1445 166 46 33 chr1 35424902 35425086 -207239267 + AluJo SINE Alu 120 311 -1 539 198 58 25 chr1 35425356 35425477 -207238876 - L2 LINE L2 -1 3312 3188 315 148 99 25 chr1 35425494 35425575 -207238778 - MIR SINE MIR -74 188 102 419 262 137 11 chr1 35425847 35426030 -207238323 + MIR SINE MIR 51 256 -6 1127 279 97 11 chr1 35429824 35430269 -207234084 - MLT1G1 LTR MaLR -38 557 75 236 305 49 0 chr1 35430754 35430836 -207233517 + MLT1K LTR MaLR 494 579 -9 185 257 0 0 chr1 35430896 35430931 -207233422 - L2 LINE L2 -27 3286 3252 958 145 0 25 chr1 35430940 35431099 -207233254 - AluSg/x SINE Alu -11 299 145 360 193 45 26 chr1 35431128 35431236 -207233117 - MIR SINE MIR -63 145 84 209 231 0 0 chr1 35431992 35432031 -207232322 - L2 LINE L2 -7 3265 3227 853 230 144 78 chr1 35433061 35433495 -207230858 - MLT1B LTR MaLR -5 451 1 3285 109 124 0 chr1 35433934 35434456 -207229897 + LTR49 LTR ERV1 9 595 0 256 280 152 66 chr1 35435295 35435324 -207229029 - L2 LINE L2 -161 3111 3086 1924 199 60 18 chr1 35435324 35435772 -207228581 - MLT1C LTR MaLR 0 467 1 256 280 152 66 chr1 35435772 35435985 -207228368 - L2 LINE L2 -186 3086 2848 582 332 34 14 chr1 35436012 35436307 -207228046 - L2 LINE L2 -527 2787 2487 695 216 56 94 chr1 35437129 35437342 -207227011 - MIR SINE MIR -35 227 23 308 259 143 70 chr1 35439167 35439468 -207224885 - MLT1H LTR MaLR -16 533 211 417 39 0 0 chr1 35439985 35440036 -207224317 + (TG)n Simple_repeat Simple_repeat 2 52 0 670 273 76 32 chr1 35440677 35440751 -207223602 - MLT1I LTR MaLR -6 403 334 2537 71 0 0 chr1 35440751 35441060 -207223293 + AluY SINE Alu 3 311 0 670 273 76 32 chr1 35441060 35441338 -207223015 - MLT1I LTR MaLR -75 334 1 1620 189 22 26 chr1 35442974 35443287 -207221066 + AluJo SINE Alu 1 312 0 331 235 194 10 chr1 35443334 35443432 -207220921 + MIR SINE MIR 47 162 -100 273 257 79 10 chr1 35443450 35443551 -207220802 - L2 LINE L2 -631 2683 2576 1295 204 56 58 chr1 35443551 35443944 -207220409 - MLT2C1 LTR ERVL 0 397 6 283 220 30 50 chr1 35444190 35444290 -207220063 + MIR SINE MIR 113 210 -52 216 326 11 21 chr1 35444554 35444649 -207219704 + L2 LINE L2 2983 3076 -196 592 294 98 25 chr1 35444963 35445198 -207219155 - MIR SINE MIR -6 256 5 300 27 0 0 chr1 35445260 35445297 -207219056 + (CA)n Simple_repeat Simple_repeat 2 38 0 194 365 52 0 chr1 35445597 35445693 -207218660 + L2 LINE L2 3123 3223 -49 277 298 19 29 chr1 35446085 35446189 -207218164 + GA-rich Low_complexity Low_complexity 4 106 0 2274 90 3 0 chr1 35446701 35446989 -207217364 + AluSc SINE Alu 1 289 -20 695 268 16 0 chr1 35447062 35447245 -207217108 - Charlie1 DNA MER1_type -2519 242 57 389 323 36 15 chr1 35449604 35449799 -207214554 + MLT1K LTR MaLR 24 222 -366 1556 204 103 11 chr1 35449802 35450160 -207214193 + MSTD LTR MaLR 3 393 -3 6431 206 44 109 chr1 35450164 35450939 -207213414 + MSTD-int LTR MaLR 2 826 -909 892 174 32 0 chr1 35450939 35451094 -207213259 + Tigger3(Golem) DNA MER2_type 2879 3038 0 6431 206 44 109 chr1 35451094 35452020 -207212333 + MSTD-int LTR MaLR 826 1735 0 1864 177 102 8 chr1 35452020 35452382 -207211971 + MSTD LTR MaLR 1 396 0 327 246 46 97 chr1 35452657 35452712 -207211641 + MLT1K LTR MaLR 421 477 -111 1397 146 4 49 chr1 35452712 35452938 -207211415 + MER20 DNA MER1_type 4 219 0 327 246 46 97 chr1 35452938 35453057 -207211296 + MLT1K LTR MaLR 477 586 -2 2270 140 137 9 chr1 35453984 35454421 -207209932 + MLT1D LTR MaLR 6 498 -7 1689 139 130 50 chr1 35454516 35454822 -207209531 - MLT1A1 LTR MaLR 0 365 28 270 0 0 0 chr1 35454822 35454852 -207209501 + (TA)n Simple_repeat Simple_repeat 2 31 0 1689 139 130 50 chr1 35454852 35454883 -207209470 - MLT1A1 LTR MaLR -337 28 1 279 226 48 24 chr1 35455061 35455145 -207209208 - MIR SINE MIR -32 230 145 305 333 49 16 chr1 35455231 35455354 -207208999 - MIR SINE MIR -113 149 23 330 276 0 0 chr1 35455964 35456040 -207208313 + MLT1J LTR MaLR 124 199 -312 404 240 53 47 chr1 35456106 35456256 -207208097 + MLT1J2 LTR MaLR 297 447 -3 224 281 122 0 chr1 35457393 35457475 -207206878 + MIR SINE MIR 139 230 -32 792 210 38 21 chr1 35457484 35457670 -207206683 + MIR SINE MIR 15 203 -59 380 297 112 51 chr1 35457763 35458059 -207206294 - L1M4 LINE L1 -1990 4156 3843 1882 159 188 55 chr1 35458150 35458229 -207206124 - MLT2B1 LTR ERVL -8 512 445 1483 24 0 0 chr1 35458229 35458394 -207205959 - L1PA5 LINE L1 -8 6146 5982 1882 159 188 55 chr1 35458394 35458766 -207205587 - MLT2B1 LTR ERVL -75 445 1 259 326 36 25 chr1 35459305 35459501 -207204852 - L1M4 LINE L1 -2314 3832 3635 26 0 0 0 chr1 35459740 35459766 -207204587 + AT_rich Low_complexity Low_complexity 1 26 0 2631 52 0 0 chr1 35460050 35460359 -207203994 + AluY SINE Alu 1 309 -2 22 0 0 0 chr1 35460359 35460381 -207203972 + AT_rich Low_complexity Low_complexity 1 22 0 772 280 123 25 chr1 35461576 35462123 -207202230 - L2 LINE L2 0 3313 2690 11392 204 58 22 chr1 35462127 35465936 -207198417 + L1ME4a LINE L1 18 3966 -2574 423 70 43 35 chr1 35465972 35466087 -207198266 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 798 208 29 34 chr1 35466114 35466239 -207198114 + L1ME4a LINE L1 3960 4085 -2455 787 240 182 23 chr1 35466239 35466497 -207197856 + AluY SINE Alu 2 300 -1 798 208 29 34 chr1 35466497 35466578 -207197775 + L1ME4a LINE L1 4085 4165 -2375 * 7192 244 33 21 chr1 35466576 35468112 -207196241 - L1MEc LINE L1 -1671 4544 2973 1737 183 24 3 chr1 35468112 35468407 -207195946 - AluJb SINE Alu -10 302 2 7192 244 33 21 chr1 35468407 35469048 -207195305 - L1MEc LINE L1 -3242 2973 2341 4353 201 31 44 chr1 35469043 35470066 -207194287 - L1MCb LINE L1 -4856 1189 649 * 2310 39 78 0 chr1 35470066 35470350 -207194003 - AluY SINE Alu -4 307 2 4353 201 31 44 chr1 35470350 35470988 -207193365 - L1MCb LINE L1 -5396 649 4 2829 186 92 38 chr1 35471007 35471977 -207192376 - L1MEc LINE L1 -3859 2356 1365 515 216 92 123 chr1 35472160 35472703 -207191650 - L1ME4a LINE L1 -210 5911 5386 329 318 9 27 chr1 35472730 35472840 -207191513 - MLT1K LTR MaLR -430 158 51 2129 118 0 37 chr1 35472895 35473218 -207191135 + AluSx SINE Alu 1 311 -1 612 293 234 13 chr1 35474348 35474724 -207189629 - L2 LINE L2 -10 3303 2845 500 282 35 12 chr1 35475880 35476050 -207188303 + MIR3 SINE MIR 14 187 -21 704 301 94 35 chr1 35476752 35477094 -207187259 - L2 LINE L2 0 3313 2952 453 285 93 31 chr1 35477880 35478073 -207186280 + MIR SINE MIR 48 252 -10 382 322 91 31 chr1 35478388 35478807 -207185546 + HAL1b LINE L1 249 692 -656 264 290 113 45 chr1 35479313 35479975 -207184378 + L1ME4a LINE L1 4835 5541 -999 336 335 28 28 chr1 35480096 35480275 -207184078 + L1ME4a LINE L1 5649 5827 -2375 381 302 16 0 chr1 35480351 35480480 -207183873 + L1ME4a LINE L1 5980 6110 -405 580 231 15 0 chr1 35480521 35480651 -207183702 - MIR SINE MIR -13 249 118 269 237 93 121 chr1 35480655 35481052 -207183301 + L1ME4a LINE L1 6128 6513 -2 527 216 105 96 chr1 35481834 35482158 -207182195 - L2 LINE L2 0 3313 2987 820 0 20 0 chr1 35482909 35483009 -207181344 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 2056 120 0 0 chr1 35483010 35483293 -207181060 - AluSx SINE Alu -29 283 1 903 258 65 8 chr1 35483949 35484197 -207180156 + MIR SINE MIR 1 262 0 362 280 53 45 chr1 35485848 35485945 -207178408 + L2 LINE L2 3180 3280 -33 1714 152 115 93 chr1 35485945 35486439 -207177914 + MLT1D LTR MaLR 1 505 0 362 280 53 45 chr1 35486439 35486473 -207177880 + L2 LINE L2 3280 3312 -1 436 268 58 89 chr1 35486866 35487157 -207177196 - L1MC4a LINE L1 -106 6015 5732 1037 267 44 56 chr1 35488946 35489287 -207175066 + MLT1J LTR MaLR 1 337 -174 231 273 26 13 chr1 35490037 35490114 -207174239 + MLT1I LTR MaLR 59 136 -273 267 304 130 45 chr1 35490813 35491060 -207173293 + L2 LINE L2 2687 2954 -360 209 364 14 21 chr1 35491040 35491180 -207173173 + L2 LINE L2 2839 2977 -336 * 715 173 67 17 chr1 35491860 35492039 -207172314 + MER53 DNA DNA 2 189 0 367 177 0 0 chr1 35492139 35492201 -207172152 + MIR SINE MIR 164 225 -37 244 281 45 121 chr1 35492257 35492613 -207171740 + L2 LINE L2 2943 3271 -1 282 376 48 33 chr1 35492769 35492979 -207171374 + MIR SINE MIR 43 255 -7 269 259 53 63 chr1 35494277 35494466 -207169887 + L2 LINE L2 2550 2736 -578 370 271 0 31 chr1 35495174 35495271 -207169082 - MIR3 SINE MIR -39 169 73 683 212 77 97 chr1 35496490 35496749 -207167604 + MIR SINE MIR 4 257 -5 445 293 133 0 chr1 35497090 35497251 -207167102 + MER5A DNA MER1_type 4 188 -1 312 312 22 43 chr1 35497292 35497430 -207166923 + L2 LINE L2 3138 3272 0 400 374 91 33 chr1 35497665 35498026 -207166327 - L3 LINE CR1 -1148 429 48 391 202 98 109 chr1 35498534 35498727 -207165626 + MLT1L LTR MaLR 2 192 -423 584 264 82 34 chr1 35498880 35499088 -207165265 + MLT1L LTR MaLR 382 599 -16 208 167 0 24 chr1 35499213 35499255 -207165098 + (CA)n Simple_repeat Simple_repeat 2 42 0 1215 242 22 72 chr1 35499729 35500175 -207164178 - LTR16A LTR ERVL 0 450 27 254 241 138 0 chr1 35500227 35500314 -207164039 + L2 LINE L2 3170 3268 -4 1420 264 147 39 chr1 35500551 35501578 -207162775 + L1ME4a LINE L1 4986 6121 0 517 60 12 24 chr1 35502271 35502354 -207161999 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 558 213 105 96 chr1 35503105 35503429 -207160924 + L2 LINE L2 2987 3313 0 230 229 93 121 chr1 35504211 35504608 -207159745 - L1ME4a LINE L1 -2 6119 5734 604 231 15 0 chr1 35504612 35504742 -207159611 + MIR SINE MIR 118 249 -13 353 302 16 0 chr1 35504783 35504912 -207159441 - L1ME4a LINE L1 -405 5716 5586 817 317 84 48 chr1 35504913 35505993 -207158360 - L1ME4a LINE L1 -713 5529 4399 356 325 91 31 chr1 35506456 35506875 -207157478 - HAL1b LINE L1 -656 692 249 483 285 93 31 chr1 35507190 35507383 -207156970 - MIR SINE MIR -10 252 48 750 301 94 35 chr1 35508169 35508511 -207155842 + L2 LINE L2 2952 3313 0 515 290 43 11 chr1 35509197 35509383 -207154970 - MIR3 SINE MIR -3 205 14 653 298 234 13 chr1 35510539 35510915 -207153438 + L2 LINE L2 2845 3303 -10 2024 118 0 37 chr1 35512045 35512368 -207151985 - AluSx SINE Alu -1 311 1 338 318 9 27 chr1 35512423 35512533 -207151820 + MLT1K LTR MaLR 51 158 -430 420 216 92 123 chr1 35512560 35513103 -207151250 + L1ME4a LINE L1 5386 5911 -210 1042 152 55 74 chr1 35513281 35513537 -207150816 + L1MCa LINE L1 1371 1621 -4805 1754 127 45 14 chr1 35514230 35514521 -207149832 - AluJb SINE Alu -12 300 1 391 330 51 11 chr1 35515601 35515777 -207148576 - MIR SINE MIR -35 227 45 198 280 0 0 chr1 35515829 35515879 -207148474 + L2 LINE L2 2921 2970 -343 204 216 98 0 chr1 35516085 35516136 -207148217 - MIR SINE MIR -122 140 85 620 204 53 53 chr1 35516203 35516355 -207147998 + MLT1J2 LTR MaLR 3 154 -296 528 286 74 0 chr1 35516400 35516575 -207147778 + MLT1J2 LTR MaLR 229 416 -34 4355 292 128 13 chr1 35517187 35519148 -207145205 - L2 LINE L2 0 3313 1083 604 278 121 5 chr1 35519708 35519906 -207144447 - MIR SINE MIR -38 224 4 631 290 37 22 chr1 35521608 35521877 -207142476 - L1ME4a LINE L1 -165 5956 5684 753 318 15 23 chr1 35521988 35522252 -207142101 - MIR SINE MIR 0 262 1 1021 246 95 35 chr1 35522358 35522793 -207141560 + MLT1H LTR MaLR 20 541 -8 318 50 0 0 chr1 35523454 35523494 -207140859 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 215 231 0 0 chr1 35523535 35523574 -207140779 - L2 LINE L2 -98 3174 3136 1118 99 0 117 chr1 35523672 35523879 -207140474 - AluSg/x SINE Alu 0 330 153 2513 48 0 6 chr1 35523879 35524192 -207140161 - AluY SINE Alu 0 311 1 1118 99 0 117 chr1 35524192 35524245 -207140108 - AluSg/x SINE Alu -177 153 95 553 319 48 37 chr1 35524971 35525266 -207139087 - L2 LINE L2 -459 2855 2558 * 1021 251 16 16 chr1 35525261 35525508 -207138845 + MIR SINE MIR 12 258 -4 318 262 58 76 chr1 35525830 35526002 -207138351 - MIR SINE MIR -74 188 20 337 320 41 8 chr1 35526311 35526433 -207137920 - MIR SINE MIR -36 226 101 572 289 29 33 chr1 35526698 35526942 -207137411 - MIR SINE MIR 0 262 18 2097 133 0 0 chr1 35527214 35527523 -207136830 + AluSc SINE Alu 1 309 0 610 101 8 17 chr1 35527525 35527644 -207136709 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 271 350 59 25 chr1 35527663 35527782 -207136571 + MIR SINE MIR 42 163 -63 432 213 91 119 chr1 35527782 35528025 -207136328 - MLT1G1 LTR MaLR -2 593 330 532 248 96 44 chr1 35528558 35528828 -207135525 - MLT1G1 LTR MaLR -310 285 2 311 296 12 0 chr1 35528851 35528932 -207135421 + MIR SINE MIR 181 262 0 807 345 60 22 chr1 35529602 35530152 -207134201 + L2 LINE L2 2736 3302 -11 1788 227 121 23 chr1 35530851 35531323 -207133030 + MLT1H LTR MaLR 5 522 -27 575 299 87 17 chr1 35532463 35532694 -207131659 + MIR SINE MIR 10 256 -6 393 327 74 26 chr1 35533063 35533332 -207131021 - MLT1J LTR MaLR 0 511 230 255 31 0 0 chr1 35533425 35533457 -207130896 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 279 206 14 14 chr1 35533566 35533639 -207130714 - MLT1L LTR MaLR -538 77 5 300 53 0 0 chr1 35534247 35534285 -207130068 + (CTG)n Simple_repeat Simple_repeat 1 38 0 751 286 124 14 chr1 35534285 35534641 -207129712 + LTR16A1 LTR ERVL 63 457 0 302 288 84 71 chr1 35534806 35535129 -207129224 + L2 LINE L2 198 524 -2790 246 296 178 49 chr1 35535150 35535498 -207128855 + L1MC4a LINE L1 5575 5967 -1841 366 206 93 21 chr1 35536222 35536319 -207128034 + MIR SINE MIR 12 115 -147 278 181 264 0 chr1 35536328 35536400 -207127953 - MER91C DNA MER1_type -19 121 31 562 303 7 0 chr1 35536419 35536571 -207127782 + MIR SINE MIR 108 260 -2 228 271 0 0 chr1 35536572 35536631 -207127722 + (CACCAT)n Simple_repeat Simple_repeat 1 59 0 211 308 103 9 chr1 35537902 35538009 -207126344 - MIR SINE MIR -32 230 114 227 207 40 55 chr1 35538127 35538213 -207126140 + MLT1J2 LTR MaLR 83 166 -243 293 344 25 32 chr1 35538277 35538434 -207125919 + MLT1J2 LTR MaLR 264 419 -31 512 293 84 23 chr1 35539116 35539331 -207125022 - MIR SINE MIR -27 235 8 258 32 0 0 chr1 35539633 35539664 -207124689 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 442 248 77 93 chr1 35539737 35540048 -207124305 + MLT1I LTR MaLR 100 405 -4 227 256 0 0 chr1 35540524 35540567 -207123786 + L2 LINE L2 3008 3050 -263 429 299 29 15 chr1 35540973 35541110 -207123243 + L2 LINE L2 3134 3272 0 390 292 14 10 chr1 35541701 35541833 -207122520 + MIR SINE MIR 23 152 -56 1025 210 16 47 chr1 35542064 35542124 -207122229 + MIR SINE MIR 12 72 -190 1990 80 4 8 chr1 35542124 35542388 -207121965 - AluY SINE Alu 0 311 49 1025 210 16 47 chr1 35542388 35542584 -207121769 + MIR SINE MIR 72 260 -2 546 259 13 7 chr1 35543840 35543995 -207120358 + MIR SINE MIR 15 166 -62 613 302 31 47 chr1 35545600 35545918 -207118435 + MLT1K LTR MaLR 275 587 -1 195 162 0 0 chr1 35546236 35546273 -207118080 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 3583 233 50 17 chr1 35547333 35548859 -207115494 + L1ME2 LINE L1 2005 3585 -2797 2546 191 12 10 chr1 35548859 35549362 -207114991 + L1MB4 LINE L1 5677 6180 0 2632 218 57 40 chr1 35549362 35550599 -207113754 + L1ME2 LINE L1 5131 6390 -10 23 0 0 0 chr1 35550607 35550630 -207113723 + AT_rich Low_complexity Low_complexity 1 23 0 1372 314 98 39 chr1 35550655 35551707 -207112646 - L2 LINE L2 -339 2975 1862 196 341 0 24 chr1 35552058 35552140 -207112213 - L2 LINE L2 -2213 1101 1022 620 280 17 23 chr1 35552341 35552520 -207111833 + MIR3 SINE MIR 31 208 0 582 272 76 72 chr1 35553412 35553702 -207110651 - MLT1K LTR MaLR -8 580 290 258 95 0 0 chr1 35553709 35553751 -207110602 + (TC)n Simple_repeat Simple_repeat 1 42 0 487 343 42 39 chr1 35553751 35554037 -207110316 - MLT1K LTR MaLR -300 288 2 2414 134 108 5 chr1 35554864 35555252 -207109101 - MSTA LTR MaLR 0 428 1 9667 174 37 2 chr1 35555252 35556848 -207107505 - MSTA-int LTR MaLR 0 1651 1 255 91 0 0 chr1 35556849 35556882 -207107471 - MSTA LTR MaLR -395 33 1 1240 211 43 10 chr1 35557051 35557355 -207106998 + L1M4c LINE L1 4076 4389 -1993 697 199 37 0 chr1 35557355 35557491 -207106862 - MLT1A1 LTR MaLR 0 365 225 692 176 8 0 chr1 35557499 35557618 -207106735 + THE1-int LTR MaLR 1337 1456 -124 762 205 19 93 chr1 35557643 35557848 -207106505 - MLT1A1 LTR MaLR -171 194 5 3625 196 24 29 chr1 35557853 35558761 -207105592 + L1M4c LINE L1 4386 5289 -1093 278 266 36 57 chr1 35558758 35558950 -207105403 + L1MEc LINE L1 2023 2210 -4186 * 1829 262 129 36 chr1 35558954 35559537 -207104816 + L1MC4a LINE L1 6 642 -5767 506 155 23 50 chr1 35559650 35559783 -207104570 + MLT1D LTR MaLR 411 503 -2 1080 258 78 50 chr1 35559796 35560280 -207104073 + L1MC4a LINE L1 3863 4360 -2046 15744 229 36 12 chr1 35560292 35566605 -207097748 - L1PA16 LINE L1 0 6817 2 1681 255 44 21 chr1 35566611 35567222 -207097131 + L1MC4a LINE L1 4352 4976 -1430 743 187 41 12 chr1 35567237 35567352 -207097001 + L1MD2 LINE L1 6182 6305 -54 1387 211 9 19 chr1 35567352 35567669 -207096684 - L1MA10 LINE L1 -4 6330 6017 743 187 41 12 chr1 35567669 35567724 -207096629 + L1MD2 LINE L1 6305 6357 -2 645 263 65 76 chr1 35567735 35567950 -207096403 + L1M4 LINE L1 2110 2319 -3827 1846 168 0 49 chr1 35567950 35568278 -207096075 - AluSx SINE Alu 0 312 1 645 263 65 76 chr1 35568278 35568496 -207095857 + L1M4 LINE L1 2319 2538 -3608 435 19 0 0 chr1 35568526 35568578 -207095775 + (TA)n Simple_repeat Simple_repeat 2 53 0 796 267 38 3 chr1 35568592 35568880 -207095473 + L1M4 LINE L1 2675 2972 -3174 3251 203 38 1 chr1 35568947 35569689 -207094664 + L1M4 LINE L1 1 2047 -4518 1074 211 55 84 chr1 35570430 35570901 -207093452 + MLT1C LTR MaLR 19 467 0 232 381 10 0 chr1 35570904 35571001 -207093352 - MIR SINE MIR -122 140 43 416 338 7 0 chr1 35571284 35571420 -207092933 + L2 LINE L2 3134 3270 -2 23 0 0 0 chr1 35571810 35571833 -207092520 + AT_rich Low_complexity Low_complexity 1 23 0 573 296 41 58 chr1 35571966 35572465 -207091888 + L1MC4a LINE L1 5163 5652 -1003 1311 138 69 11 chr1 35572465 35572725 -207091628 - L1MA8 LINE L1 -2 6289 6015 573 296 41 58 chr1 35572725 35572927 -207091426 + L1MC4a LINE L1 5652 5856 -799 779 289 92 16 chr1 35573716 35574020 -207090333 + L1MC4a LINE L1 5829 6155 -1913 685 258 0 6 chr1 35576028 35576187 -207088166 + MIR SINE MIR 94 251 -11 559 241 128 27 chr1 35576235 35576422 -207087931 - MIR SINE MIR -55 207 2 855 204 82 5 chr1 35576674 35576870 -207087483 - MIR SINE MIR -49 213 3 413 250 122 47 chr1 35577096 35577268 -207087085 + MIR3 SINE MIR 15 199 -9 251 370 188 0 chr1 35577501 35577666 -207086687 + L3 LINE CR1 1312 1507 -70 305 212 42 144 chr1 35577721 35577839 -207086514 - L2 LINE L2 0 3272 3167 465 34 0 0 chr1 35579177 35579236 -207085117 + (GA)n Simple_repeat Simple_repeat 2 60 0 310 208 42 14 chr1 35579243 35579315 -207085038 - MIR SINE MIR -150 112 39 1329 221 36 70 chr1 35580263 35580648 -207083705 + MLT1A2 LTR MaLR 1 372 -2 663 269 157 19 chr1 35580887 35581103 -207083250 + MIR SINE MIR 17 262 0 233 211 158 90 chr1 35581190 35581280 -207083073 + MLT1J LTR MaLR 236 339 -172 231 36 0 0 chr1 35581280 35581308 -207083045 + (TA)n Simple_repeat Simple_repeat 2 29 0 233 211 158 90 chr1 35581308 35581350 -207083003 + MLT1J LTR MaLR 339 377 -134 455 176 25 101 chr1 35581365 35581484 -207082869 - MIR SINE MIR -107 155 46 236 225 188 0 chr1 35582021 35582101 -207082252 - MIR3 SINE MIR -8 200 106 578 268 115 21 chr1 35582123 35582358 -207081995 - MIR SINE MIR -5 257 1 1031 228 60 0 chr1 35583000 35583233 -207081120 + MIR SINE MIR 16 262 0 870 193 10 51 chr1 35584132 35584329 -207080024 + MER5A DNA MER1_type 1 189 0 927 210 17 6 chr1 35584336 35584512 -207079841 + MER5B DNA MER1_type 1 178 0 194 261 0 31 chr1 35585356 35585421 -207078932 - MIR SINE MIR -14 248 186 691 243 131 63 chr1 35585472 35585839 -207078514 + MLT1I LTR MaLR 16 407 -2 2474 130 18 66 chr1 35585878 35586332 -207078021 - Tigger2a DNA MER2_type -2 432 1 424 260 124 28 chr1 35586332 35586509 -207077844 - MIR SINE MIR -62 200 7 578 299 82 0 chr1 35587885 35588092 -207076261 - MER58A DNA MER1_type 0 224 1 774 313 96 57 chr1 35588547 35589575 -207074778 + L2 LINE L2 2258 3313 0 182 118 29 0 chr1 35589623 35589657 -207074696 + CT-rich Low_complexity Low_complexity 6 40 0 1833 155 36 12 chr1 35589728 35590064 -207074289 - L1MB1 LINE L1 0 6168 5825 339 239 65 0 chr1 35590222 35590314 -207074039 + MIR SINE MIR 111 208 -54 356 236 90 0 chr1 35590435 35590524 -207073829 + L2 LINE L2 3193 3289 -24 1725 135 0 19 chr1 35590674 35590956 -207073397 + AluSx SINE Alu 42 312 0 400 315 100 85 chr1 35591587 35591927 -207072426 + L2 LINE L2 2927 3271 -1 691 306 85 20 chr1 35591993 35592287 -207072066 - MLT1I LTR MaLR -34 375 63 2267 100 0 19 chr1 35592404 35592715 -207071638 + AluSx SINE Alu 7 311 -1 362 265 23 30 chr1 35593324 35593456 -207070897 + Charlie8 DNA MER1_type 88 218 -2199 234 0 0 0 chr1 35593606 35593632 -207070721 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 43755 33 21 2 chr1 35593675 35599708 -207064645 - L1PA3 LINE L1 -1 6154 2 278 214 0 0 chr1 35600977 35601033 -207063320 + L1MEd LINE L1 1241 1296 -4909 23 33 0 0 chr1 35601209 35601239 -207063114 + AT_rich Low_complexity Low_complexity 1 30 0 529 313 32 36 chr1 35601326 35601914 -207062439 + L1MEd LINE L1 2144 2686 -3529 511 274 93 20 chr1 35601991 35602443 -207061910 + L1MEd LINE L1 2806 3290 -2925 503 175 16 71 chr1 35602448 35602574 -207061779 - Tigger1 DNA MER2_type -2129 289 171 1673 161 81 0 chr1 35602575 35602836 -207061517 + AluJb SINE Alu 1 282 -30 298 326 87 30 chr1 35602984 35603129 -207061224 - L2 LINE L2 -2202 1112 977 318 26 0 0 chr1 35603129 35603168 -207061185 + (TG)n Simple_repeat Simple_repeat 1 39 0 298 326 87 30 chr1 35603168 35603390 -207060963 - L2 LINE L2 -2337 977 724 2733 88 8 3 chr1 35603394 35603767 -207060586 - THE1C LTR MaLR 0 375 1 2153 141 43 27 chr1 35603780 35604156 -207060197 - MLT1B LTR MaLR -8 382 1 420 296 73 66 chr1 35604157 35604582 -207059771 - L2 LINE L2 -2592 722 295 989 147 0 0 chr1 35604756 35604912 -207059441 - L1PA15 LINE L1 -1 6164 6009 3154 129 28 2 chr1 35605559 35606061 -207058292 - L1PA16 LINE L1 -2 6164 5650 5074 34 0 2 chr1 35606188 35606776 -207057577 - L1PA5 LINE L1 -4 6150 5564 235 250 185 9 chr1 35606803 35606911 -207057442 - L2 LINE L2 -33 3239 3113 1964 58 39 0 chr1 35607164 35607421 -207056932 + L1PA13 LINE L1 5896 6162 -1 300 322 79 0 chr1 35607566 35607743 -207056610 + L2 LINE L2 1527 1717 -1597 394 327 25 6 chr1 35607941 35608100 -207056253 + L2 LINE L2 2544 2705 -609 408 279 32 38 chr1 35608308 35608466 -207055887 - L2 LINE L2 -531 2783 2627 193 333 0 11 chr1 35608475 35608565 -207055788 - L2 LINE L2 -803 2511 2423 4783 101 1 3 chr1 35608586 35609243 -207055110 + L1PA13 LINE L1 5488 6143 -20 731 279 71 109 chr1 35609501 35610679 -207053674 + L2 LINE L2 951 2083 -1231 942 234 25 0 chr1 35610755 35610952 -207053401 + MLT1H LTR MaLR 1 202 -347 206 328 58 87 chr1 35611114 35611425 -207052928 + L2 LINE L2 2882 3183 -89 1031 213 16 103 chr1 35612401 35612587 -207051766 + MLT1J1 LTR MaLR 1 149 -297 869 151 0 7 chr1 35612587 35612739 -207051614 + L1MB3 LINE L1 6032 6182 -1 1031 213 16 103 chr1 35612739 35612872 -207051481 + MLT1J1 LTR MaLR 149 292 -154 1693 231 75 33 chr1 35612941 35613504 -207050849 - MLT1F1 LTR MaLR -3 564 1 408 250 71 14 chr1 35614663 35614803 -207049550 - MIR3 SINE MIR -7 201 54 432 264 82 23 chr1 35614838 35615058 -207049295 - L2 LINE L2 0 3313 3081 398 253 173 13 chr1 35616146 35616296 -207048057 - MER5A DNA MER1_type -6 183 10 505 287 92 11 chr1 35616492 35616666 -207047687 + MER91A DNA MER1_type 6 193 -3 553 230 176 115 chr1 35617019 35617410 -207046943 - L2 LINE L2 0 3313 2899 476 150 0 143 chr1 35617633 35617773 -207046580 - L2 LINE L2 0 3313 3194 5734 138 42 12 chr1 35618137 35619285 -207045068 + L1MA4 LINE L1 5114 6289 -11 194 388 0 0 chr1 35619357 35619424 -207044929 + L2 LINE L2 3202 3268 -4 213 333 0 0 chr1 35619564 35619630 -207044723 + L2 LINE L2 3247 3312 -1 1054 200 42 114 chr1 35620738 35621209 -207043144 + MLT1C LTR MaLR 19 467 0 204 381 10 0 chr1 35621212 35621309 -207043044 - MIR SINE MIR -122 140 43 380 338 7 0 chr1 35621592 35621728 -207042625 + L2 LINE L2 3134 3270 -2 23 0 0 0 chr1 35622118 35622141 -207042212 + AT_rich Low_complexity Low_complexity 1 23 0 545 287 44 75 chr1 35622274 35622773 -207041580 + L1MC4a LINE L1 4903 5389 -975 1246 138 69 11 chr1 35622773 35623033 -207041320 - L1MA8 LINE L1 -2 6289 6015 545 287 44 75 chr1 35623033 35623235 -207041118 + L1MC4a LINE L1 5389 5596 -768 756 289 92 16 chr1 35624024 35624328 -207040025 + L1MC4a LINE L1 5569 5895 -1913 637 258 0 6 chr1 35626336 35626495 -207037858 + MIR SINE MIR 94 251 -11 502 241 128 27 chr1 35626543 35626730 -207037623 - MIR SINE MIR -55 207 2 794 198 44 6 chr1 35626996 35627178 -207037175 - MIR SINE MIR -71 191 3 363 265 146 13 chr1 35627428 35627579 -207036774 + MIR3 SINE MIR 33 203 -5 270 220 42 144 chr1 35628029 35628147 -207036206 - L2 LINE L2 0 3272 3167 393 39 0 0 chr1 35629485 35629536 -207034817 + (GA)n Simple_repeat Simple_repeat 2 52 0 284 208 42 14 chr1 35629543 35629615 -207034738 - MIR SINE MIR -150 112 39 1215 221 36 70 chr1 35630563 35630948 -207033405 + MLT1A2 LTR MaLR 1 372 -2 597 269 157 19 chr1 35631187 35631403 -207032950 + MIR SINE MIR 17 262 0 228 211 158 90 chr1 35631490 35631580 -207032773 + MLT1J LTR MaLR 236 339 -172 213 39 0 0 chr1 35631580 35631606 -207032747 + (TA)n Simple_repeat Simple_repeat 2 27 0 228 211 158 90 chr1 35631606 35631648 -207032705 + MLT1J LTR MaLR 339 377 -134 418 176 25 101 chr1 35631663 35631782 -207032571 - MIR SINE MIR -107 155 46 214 225 188 0 chr1 35632319 35632399 -207031954 - MIR3 SINE MIR -8 200 106 505 268 115 21 chr1 35632421 35632656 -207031697 - MIR SINE MIR -5 257 1 954 225 61 0 chr1 35633298 35633529 -207030824 + MIR SINE MIR 16 260 -2 814 193 10 51 chr1 35634431 35634628 -207029725 + MER5A DNA MER1_type 1 189 0 927 210 17 6 chr1 35634635 35634811 -207029542 + MER5B DNA MER1_type 1 178 0 212 261 0 31 chr1 35635655 35635720 -207028633 - MIR SINE MIR -14 248 186 691 243 131 63 chr1 35635771 35636138 -207028215 + MLT1I LTR MaLR 16 407 -2 2590 132 18 66 chr1 35636177 35636631 -207027722 - Tigger2a DNA MER2_type -2 432 1 477 260 124 28 chr1 35636631 35636808 -207027545 - MIR SINE MIR -62 200 7 624 290 87 5 chr1 35638184 35638391 -207025962 - MER58A DNA MER1_type 0 224 1 974 310 96 57 chr1 35638846 35639874 -207024479 + L2 LINE L2 2258 3313 0 182 118 29 0 chr1 35639922 35639956 -207024397 + CT-rich Low_complexity Low_complexity 6 40 0 1947 152 36 12 chr1 35640027 35640363 -207023990 - L1MB1 LINE L1 0 6168 5825 367 239 65 0 chr1 35640521 35640613 -207023740 + MIR SINE MIR 111 208 -54 379 239 91 0 chr1 35640734 35640822 -207023531 + L2 LINE L2 3193 3288 -25 1709 135 0 19 chr1 35640973 35641255 -207023098 + AluSx SINE Alu 42 312 0 496 315 100 85 chr1 35641886 35642226 -207022127 + L2 LINE L2 2927 3271 -1 695 306 85 20 chr1 35642292 35642586 -207021767 - MLT1I LTR MaLR -34 375 63 2270 97 0 19 chr1 35642703 35643014 -207021339 + AluSx SINE Alu 7 311 -1 376 265 23 30 chr1 35643623 35643755 -207020598 + Charlie8 DNA MER1_type 99 229 -2188 207 0 0 0 chr1 35643905 35643928 -207020425 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 43833 33 21 1 chr1 35643974 35650000 -207014353 - L1PA3 LINE L1 -1 6154 2 280 214 0 0 chr1 35651269 35651325 -207013028 + L1MEd LINE L1 1241 1296 -4909 23 33 0 0 chr1 35651501 35651531 -207012822 + AT_rich Low_complexity Low_complexity 1 30 0 961 299 94 26 chr1 35651618 35652735 -207011618 + L1MEd LINE L1 2144 3290 -2925 514 175 16 71 chr1 35652740 35652866 -207011487 - Tigger1 DNA MER2_type -2129 289 171 1659 161 81 0 chr1 35652867 35653128 -207011225 + AluJb SINE Alu 1 282 -30 1050 122 0 0 chr1 35653146 35653326 -207011027 + (TC)n Simple_repeat Simple_repeat 1 180 0 357 24 0 0 chr1 35653325 35653367 -207010986 + (CA)n Simple_repeat Simple_repeat 1 42 0 * 2022 107 0 7 chr1 35653385 35653656 -207010697 + AluSq SINE Alu 1 269 -44 1107 150 0 6 chr1 35653677 35653850 -207010503 - Tigger1 DNA MER2_type -2242 176 5 3024 163 100 9 chr1 35653861 35654401 -207009952 - MLT1D-int LTR MaLR -633 738 142 5765 165 9 4 chr1 35654401 35655320 -207009033 - MER49 LTR ERV1 0 923 1 3024 163 100 9 chr1 35655320 35655349 -207009004 - MLT1D-int LTR MaLR -1229 142 117 1480 44 0 22 chr1 35655427 35655608 -207008745 + L1PA11 LINE L1 5996 6172 -2 4174 259 66 19 chr1 35655618 35657270 -207007083 + L1ME3A LINE L1 2045 3746 -2469 1762 208 134 36 chr1 35657273 35658242 -207006111 + L1ME3A LINE L1 3883 4940 -1275 1721 209 65 51 chr1 35658242 35658734 -207005619 - MLT1D LTR MaLR 0 505 7 1321 224 84 32 chr1 35658746 35659184 -207005169 + L1ME3A LINE L1 4942 5402 -813 1948 165 0 0 chr1 35659184 35659481 -207004872 + AluSx SINE Alu 1 297 -15 793 255 67 29 chr1 35659481 35659828 -207004525 + L1ME3A LINE L1 5748 6100 -90 242 322 0 0 chr1 35659979 35660038 -207004315 - MIR SINE MIR -116 92 34 252 282 0 0 chr1 35660899 35660970 -207003383 - L2 LINE L2 -236 3036 2966 240 35 0 0 chr1 35661243 35661272 -207003081 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 71 0 0 chr1 35661274 35661330 -207003023 + AT_rich Low_complexity Low_complexity 1 56 0 206 393 72 23 chr1 35661492 35661797 -207002556 - L2 LINE L2 -557 2757 2438 2862 110 0 0 chr1 35661814 35662178 -207002175 - THE1B LTR MaLR 0 364 1 232 267 35 103 chr1 35662590 35662650 -207001703 - MIR SINE MIR -152 110 60 875 246 39 27 chr1 35662650 35662906 -207001447 - MIR SINE MIR 0 262 4 232 267 35 103 chr1 35662906 35662961 -207001392 - MIR SINE MIR -202 60 3 25 0 0 0 chr1 35663588 35663613 -207000740 + AT_rich Low_complexity Low_complexity 1 25 0 242 299 31 71 chr1 35663971 35664098 -207000255 + L2 LINE L2 2686 2807 -507 3254 126 107 44 chr1 35664126 35664714 -206999639 - MER51A LTR ERV1 -9 625 1 195 261 22 0 chr1 35664833 35664879 -206999474 + MIR SINE MIR 8 54 -208 462 345 64 16 chr1 35664880 35665129 -206999224 - MLT1K LTR MaLR -326 262 2 2101 201 22 65 chr1 35665144 35665685 -206998668 + MER113 DNA MER1_type? 4 521 0 497 334 94 28 chr1 35665927 35666397 -206997956 + L2 LINE L2 2371 2871 -443 404 284 90 77 chr1 35666465 35666775 -206997578 + L2 LINE L2 2950 3263 -9 5179 181 13 5 chr1 35667777 35668699 -206995654 - MER63C DNA MER1_type 0 930 2 887 204 92 29 chr1 35668971 35669177 -206995176 - MER20 DNA MER1_type 0 219 1 378 240 96 10 chr1 35669199 35669303 -206995050 - L2 LINE L2 0 3313 3201 346 294 59 25 chr1 35669333 35669452 -206994901 + L2 LINE L2 3141 3263 -9 2025 217 94 6 chr1 35669623 35670164 -206994189 - MLT1E3 LTR MaLR -4 620 7 212 302 0 0 chr1 35670307 35670370 -206993983 - MIR SINE MIR -54 208 146 193 159 45 0 chr1 35670371 35670415 -206993938 + L2 LINE L2 2936 2981 -332 2593 294 55 58 chr1 35670445 35671378 -206992975 + L1MC4 LINE L1 7112 8041 -1 209 206 16 16 chr1 35671424 35671487 -206992866 + L2 LINE L2 3103 3165 -148 * 254 222 48 16 chr1 35671466 35671529 -206992824 - MIR SINE MIR -54 208 144 206 319 43 21 chr1 35671528 35671622 -206992731 + L2 LINE L2 2935 3030 -283 * 588 225 47 0 chr1 35671639 35671768 -206992585 + L2 LINE L2 3174 3308 -5 1549 247 160 45 chr1 35671930 35672461 -206991892 + MLT1E LTR MaLR 1 592 -1 2168 126 0 0 chr1 35672660 35672953 -206991400 + AluSg SINE Alu 1 293 -17 1631 217 21 47 chr1 35673892 35674275 -206990078 - MLT1A2 LTR MaLR 0 374 2 1141 215 197 67 chr1 35674337 35674882 -206989471 + LTR50 LTR ERVL 83 793 -2 388 306 54 0 chr1 35675091 35675238 -206989115 + L2 LINE L2 3159 3313 0 222 150 0 0 chr1 35675251 35675291 -206989062 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 2147 96 26 23 chr1 35675382 35675684 -206988669 + AluSc SINE Alu 1 303 -6 267 240 39 106 chr1 35675684 35675788 -206988565 - MLT1J LTR MaLR -41 470 374 340 240 20 10 chr1 35675864 35676013 -206988340 - MLT1J LTR MaLR -313 198 6 206 302 62 52 chr1 35676227 35676323 -206988030 + L3 LINE CR1 900 996 -581 400 311 134 0 chr1 35676366 35676530 -206987823 + MIR SINE MIR 77 262 0 2084 137 13 0 chr1 35676625 35676925 -206987428 + AluSx SINE Alu 1 304 -8 213 311 74 8 chr1 35676925 35677035 -206987318 + L3 LINE CR1 1111 1231 -346 2262 81 3 20 chr1 35677035 35677330 -206987023 + AluSc SINE Alu 1 290 -19 213 311 74 8 chr1 35677330 35677341 -206987012 + L3 LINE CR1 1231 1240 -337 247 229 0 0 chr1 35677466 35677514 -206986839 + L2 LINE L2 3163 3210 -62 2500 61 0 3 chr1 35677902 35678212 -206986141 + AluY SINE Alu 1 309 -2 218 250 42 0 chr1 35678226 35678274 -206986079 - L2 LINE L2 -8 3264 3215 2944 233 135 54 chr1 35678311 35679730 -206984623 - HAL1 LINE L1 -1 2506 972 306 298 71 71 chr1 35680089 35680425 -206983928 - HAL1 LINE L1 -2171 336 1 425 316 29 0 chr1 35680964 35681103 -206983250 + MER117 DNA MER1_type 6 148 -49 432 299 88 44 chr1 35681157 35681408 -206982945 - L3 LINE CR1 -859 718 457 180 0 0 0 chr1 35681745 35681765 -206982588 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 23 0 0 0 chr1 35682180 35682203 -206982150 + AT_rich Low_complexity Low_complexity 1 23 0 310 327 0 10 chr1 35682737 35682838 -206981515 + L2 LINE L2 2971 3070 -202 263 250 102 23 chr1 35683168 35683256 -206981097 + L2 LINE L2 3172 3266 -47 301 245 7 142 chr1 35683642 35683719 -206980634 - MER94 DNA DNA 0 134 87 1943 155 0 3 chr1 35683719 35684009 -206980344 - AluSx SINE Alu -23 289 1 301 245 7 142 chr1 35684009 35684086 -206980267 - MER94 DNA DNA -47 87 1 1832 290 112 36 chr1 35684281 35684756 -206979597 + L2 LINE L2 1936 2373 -940 2149 117 0 0 chr1 35684756 35685082 -206979271 - AluSx SINE Alu 0 326 1 1832 290 112 36 chr1 35685082 35685873 -206978480 + L2 LINE L2 2373 3313 0 347 173 27 0 chr1 35686866 35686941 -206977412 + GA-rich Low_complexity Low_complexity 4 80 0 2450 103 0 0 chr1 35686965 35687276 -206977077 + AluSq SINE Alu 2 312 -1 450 233 0 8 chr1 35687318 35687438 -206976915 - MER103 DNA DNA -46 120 2 216 149 21 43 chr1 35688633 35688680 -206975673 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 448 230 169 7 chr1 35688756 35688904 -206975449 + MIR SINE MIR 85 256 -6 828 255 30 0 chr1 35689068 35689268 -206975085 + MER3 DNA MER1_type 1 206 -3 448 262 10 0 chr1 35689407 35689510 -206974843 + L2 LINE L2 3210 3313 0 222 283 17 0 chr1 35689512 35689572 -206974781 + GA-rich Low_complexity Low_complexity 3 63 0 399 311 25 0 chr1 35689580 35689702 -206974651 - L3 LINE CR1 -110 1467 1343 2309 102 3 0 chr1 35689853 35690147 -206974206 + AluSg SINE Alu 1 295 -15 446 341 109 0 chr1 35690157 35690368 -206973985 - MIR SINE MIR -8 254 21 318 98 0 0 chr1 35691468 35691519 -206972834 + (TG)n Simple_repeat Simple_repeat 2 52 0 952 146 27 16 chr1 35691677 35691862 -206972491 + MER53 DNA DNA 3 189 0 331 301 78 95 chr1 35691864 35692210 -206972143 + MLT1I LTR MaLR 57 396 -13 545 220 120 33 chr1 35692211 35692377 -206971976 + MIR SINE MIR 69 248 -14 381 226 78 0 chr1 35692884 35692986 -206971367 + MIR SINE MIR 32 141 -121 395 169 13 0 chr1 35693292 35693369 -206970984 + MIR SINE MIR 168 245 -17 378 0 0 0 chr1 35693500 35693542 -206970811 + (CA)n Simple_repeat Simple_repeat 2 43 0 266 257 114 84 chr1 35695163 35695400 -206968953 - MIR SINE MIR 0 262 19 722 202 0 8 chr1 35695928 35696057 -206968296 - FLAM_A SINE Alu -5 128 1 204 254 48 0 chr1 35696140 35696203 -206968150 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 475 154 0 136 chr1 35697229 35697339 -206967014 + MER2 DNA MER2_type 1 95 -250 2009 123 39 0 chr1 35697378 35697662 -206966691 + AluSx SINE Alu 1 295 -17 894 178 225 4 chr1 35697742 35697896 -206966457 + MER2 DNA MER2_type 64 183 -162 215 30 0 30 chr1 35697896 35697929 -206966424 + (TTG)n Simple_repeat Simple_repeat 2 33 0 894 178 225 4 chr1 35697929 35698005 -206966348 + MER2 DNA MER2_type 183 345 0 524 222 48 8 chr1 35697994 35698120 -206966233 + MER94 DNA DNA 2 132 -2 * 29 28 0 0 chr1 35699200 35699236 -206965117 + AT_rich Low_complexity Low_complexity 1 36 0 395 226 11 17 chr1 35700232 35700409 -206963944 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 218 194 32 32 chr1 35700427 35700489 -206963864 + CT-rich Low_complexity Low_complexity 1 62 0 242 311 0 0 chr1 35700530 35700591 -206963762 - L2 LINE L2 -87 3185 3125 191 270 68 14 chr1 35700678 35700752 -206963601 - L2 LINE L2 -39 3274 3197 253 358 188 0 chr1 35702661 35702826 -206961527 + MER91A DNA MER1_type 1 196 0 265 255 108 20 chr1 35703764 35703866 -206960487 + MIR SINE MIR 16 126 -82 260 303 278 0 chr1 35704069 35704231 -206960122 + MIR SINE MIR 34 240 -22 291 71 0 0 chr1 35704987 35705029 -206959324 + (CA)n Simple_repeat Simple_repeat 2 43 0 441 294 128 32 chr1 35705367 35705585 -206958768 + MIR SINE MIR 20 258 -4 690 195 47 86 chr1 35706008 35706264 -206958089 + L1MC5 LINE L1 7659 7904 -57 219 268 84 0 chr1 35706521 35706592 -206957761 + MIR SINE MIR 176 252 -10 278 338 28 41 chr1 35707021 35707257 -206957096 - MIR SINE MIR -12 250 19 938 255 16 20 chr1 35707331 35707582 -206956771 - L3 LINE CR1 -778 799 550 787 282 179 14 chr1 35707791 35708299 -206956054 + L2 LINE L2 2706 3311 -2 194 286 0 32 chr1 35709304 35709367 -206954986 + MIR SINE MIR 2 62 -200 342 146 13 172 chr1 35709456 35709607 -206954746 - MIR SINE MIR 0 262 136 257 192 19 0 chr1 35709706 35709758 -206954595 + MLT1H LTR MaLR 223 275 -274 629 214 29 0 chr1 35709846 35709986 -206954367 + MLT1H LTR MaLR 406 549 0 526 261 65 7 chr1 35709986 35710139 -206954214 - MIR SINE MIR -99 163 2 455 298 69 27 chr1 35710178 35710531 -206953822 - L2 LINE L2 -187 3085 2709 339 348 103 13 chr1 35710595 35710819 -206953534 - MIR SINE MIR -6 256 13 471 211 16 16 chr1 35710840 35710963 -206953390 + MIR3 SINE MIR 6 128 -80 237 220 20 10 chr1 35711445 35711545 -206952808 + (CA)n Simple_repeat Simple_repeat 1 101 0 424 244 6 6 chr1 35711617 35711777 -206952576 + (CA)n Simple_repeat Simple_repeat 1 160 0 207 216 0 0 chr1 35712291 35712328 -206952025 + MIR SINE MIR 118 154 -108 325 279 45 27 chr1 35712618 35712729 -206951624 - MER5A DNA MER1_type -20 169 57 601 301 62 18 chr1 35713686 35713912 -206950441 + MIR SINE MIR 21 256 -6 363 303 74 8 chr1 35714066 35714188 -206950165 - L2 LINE L2 -2 3270 3141 469 295 114 12 chr1 35714639 35714847 -206949506 - MIR SINE MIR -1 261 38 253 345 26 0 chr1 35714967 35715080 -206949273 - L2 LINE L2 -225 3047 2932 2308 118 0 9 chr1 35715540 35715855 -206948498 + AluSx SINE Alu 1 312 0 2389 104 0 3 chr1 35717148 35717446 -206946907 - AluSq SINE Alu -15 298 2 339 320 68 20 chr1 35717460 35717607 -206946746 + L2 LINE L2 3115 3268 -4 250 301 11 0 chr1 35717823 35717916 -206946437 + L2 LINE L2 2350 2443 -871 727 276 58 88 chr1 35718369 35718799 -206945554 + L2 LINE L2 2493 2883 -430 2042 155 0 3 chr1 35718799 35719108 -206945245 - AluJo SINE Alu -4 308 1 727 276 58 88 chr1 35719108 35719525 -206944828 + L2 LINE L2 2883 3311 -2 408 368 135 34 chr1 35719583 35720138 -206944215 + L3 LINE CR1 966 1576 -1 330 292 0 21 chr1 35720445 35720541 -206943812 + MIR SINE MIR 47 140 -122 363 308 89 24 chr1 35720798 35720967 -206943386 - MIR SINE MIR -49 213 34 264 30 0 0 chr1 35721255 35721288 -206943065 + (CAA)n Simple_repeat Simple_repeat 1 33 0 276 258 28 63 chr1 35721364 35721517 -206942836 - MIR SINE MIR -61 147 45 289 220 92 37 chr1 35722061 35722170 -206942183 + MIR SINE MIR 130 244 -18 298 333 140 14 chr1 35724290 35724512 -206939841 - MIR SINE MIR 0 262 13 242 194 65 0 chr1 35724795 35724857 -206939496 + MIR SINE MIR 48 113 -149 335 319 25 44 chr1 35724865 35725069 -206939284 - L2 LINE L2 0 3313 3114 227 59 29 0 chr1 35725237 35725271 -206939082 + MADE1 DNA Mariner 45 79 -1 190 318 35 0 chr1 35725271 35725356 -206938997 - L2 LINE L2 -206 3107 3020 290 140 0 0 chr1 35725412 35725462 -206938891 + L2 LINE L2 3264 3313 0 187 172 0 0 chr1 35725478 35725507 -206938846 + L2 LINE L2 3263 3291 -22 180 0 0 0 chr1 35725929 35725949 -206938404 + (A)n Simple_repeat Simple_repeat 1 20 0 278 261 62 51 chr1 35726047 35726223 -206938130 + MER3 DNA MER1_type 32 209 0 * 873 144 29 17 chr1 35726066 35726240 -206938113 - MER3 DNA MER1_type -6 203 28 483 263 42 94 chr1 35726252 35726336 -206938017 + MIR SINE MIR 31 118 -144 1773 162 61 24 chr1 35726336 35726712 -206937641 - MLT1B LTR MaLR 0 390 1 483 263 42 94 chr1 35726712 35726840 -206937513 + MIR SINE MIR 118 232 -30 205 366 0 12 chr1 35727220 35727302 -206937051 - L2 LINE L2 -38 3234 3154 622 254 49 5 chr1 35727372 35727557 -206936796 + MIR SINE MIR 70 262 0 492 312 87 9 chr1 35728537 35728755 -206935598 + MIR SINE MIR 14 248 -14 240 35 0 0 chr1 35729653 35729682 -206934671 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 252 297 0 0 chr1 35729687 35729751 -206934602 - L2 LINE L2 0 3272 3209 380 309 90 62 chr1 35729754 35730515 -206933838 - L2 LINE L2 -225 3047 2258 240 296 88 75 chr1 35730722 35730948 -206933405 + L2 LINE L2 3044 3272 0 260 137 78 20 chr1 35731017 35731068 -206933285 - MLT1J2 LTR MaLR -10 440 387 354 23 0 0 chr1 35731500 35731543 -206932810 + (TC)n Simple_repeat Simple_repeat 1 43 0 2177 142 18 28 chr1 35732219 35732613 -206931740 + MLT1B LTR MaLR 1 390 0 191 294 76 0 chr1 35732621 35732713 -206931640 + L2 LINE L2 2752 2850 -464 207 0 0 0 chr1 35732835 35732858 -206931495 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 681 155 0 17 chr1 35732861 35732977 -206931376 - FRAM SINE Alu -31 145 32 413 283 202 16 chr1 35732985 35733243 -206931110 + L2 LINE L2 3008 3313 0 399 145 0 0 chr1 35735474 35735557 -206928796 + (TG)n Simple_repeat Simple_repeat 1 83 0 221 226 0 19 chr1 35736142 35736195 -206928158 + (CCG)n Simple_repeat Simple_repeat 1 52 0 394 331 0 31 chr1 35736291 35736454 -206927899 + C-rich Low_complexity Low_complexity 3 160 0 183 139 0 0 chr1 35737050 35737086 -206927267 + (CGG)n Simple_repeat Simple_repeat 1 36 0 235 0 0 54 chr1 35737462 35737499 -206926854 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2442 89 0 9 chr1 35738247 35738563 -206925790 - AluSq SINE Alu 0 313 1 665 331 120 48 chr1 35738876 35738945 -206925408 + L2 LINE L2 1566 1629 -1685 2311 82 10 13 chr1 35738945 35739249 -206925104 - AluSp SINE Alu -10 303 1 665 331 120 48 chr1 35739249 35740106 -206924247 + L2 LINE L2 1629 2558 -756 279 319 43 22 chr1 35740404 35740542 -206923811 + L2 LINE L2 3171 3311 -2 197 295 172 8 chr1 35741150 35741272 -206923081 + MIR SINE MIR 108 249 -13 742 286 92 4 chr1 35741377 35741604 -206922749 - MIR SINE MIR 0 262 16 194 273 39 78 chr1 35741952 35742029 -206922324 + L2 LINE L2 3182 3255 -17 338 331 14 42 chr1 35742256 35742398 -206921955 - MIR SINE MIR -105 157 20 235 274 0 0 chr1 35742397 35742459 -206921894 + MIR SINE MIR 201 262 0 * 208 299 10 41 chr1 35743366 35743463 -206920890 + (ATAGG)n Simple_repeat Simple_repeat 4 97 0 * 391 263 11 59 chr1 35743425 35743670 -206920683 + (GGATG)n Simple_repeat Simple_repeat 1 233 0 426 333 0 0 chr1 35745143 35745260 -206919093 + MIR SINE MIR 30 146 -62 242 232 205 46 chr1 35745327 35745478 -206918875 - L3 LINE CR1 -11 1566 1392 2411 97 0 0 chr1 35746114 35746412 -206917941 + AluSg SINE Alu 1 298 -12 563 322 47 49 chr1 35746456 35747263 -206917090 - L1ME3A LINE L1 -230 5940 5127 188 290 43 14 chr1 35747514 35747583 -206916770 - L2 LINE L2 -2 3270 3200 2532 147 14 53 chr1 35747620 35747823 -206916530 + L1MB3 LINE L1 5688 5897 -286 2134 135 0 0 chr1 35747823 35748126 -206916227 + AluSx SINE Alu 1 303 -9 2532 147 14 53 chr1 35748126 35748431 -206915922 + L1MB3 LINE L1 5897 6176 -7 235 323 73 42 chr1 35748439 35748631 -206915722 - L2 LINE L2 -189 3083 2886 1636 167 0 38 chr1 35748989 35749282 -206915071 + AluJo SINE Alu 1 282 -30 276 186 0 0 chr1 35749305 35749364 -206914989 + GA-rich Low_complexity Low_complexity 4 62 0 279 322 0 0 chr1 35749496 35749586 -206914767 + CT-rich Low_complexity Low_complexity 4 93 0 1666 179 0 24 chr1 35750199 35750495 -206913858 - AluJo SINE Alu -9 303 15 565 285 115 0 chr1 35750562 35750727 -206913626 - MIR SINE MIR -70 192 9 2142 143 0 9 chr1 35750755 35751070 -206913283 + AluJo SINE Alu 1 312 0 286 321 36 36 chr1 35751070 35751207 -206913146 - MER5A DNA MER1_type -51 138 2 312 283 242 8 chr1 35752203 35752323 -206912030 + MER5A DNA MER1_type 41 188 -1 202 274 137 20 chr1 35752392 35752494 -206911859 + MIR SINE MIR 112 225 -37 422 221 21 11 chr1 35752528 35752623 -206911730 + L2 LINE L2 3202 3297 -16 225 0 0 0 chr1 35752624 35752649 -206911704 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 373 317 163 35 chr1 35753335 35753852 -206910501 + L2 LINE L2 1567 2016 -1298 2543 74 0 3 chr1 35753852 35754164 -206910189 - AluY SINE Alu 0 311 1 373 317 163 35 chr1 35754164 35754536 -206909817 + L2 LINE L2 2016 2570 -744 682 197 141 7 chr1 35754940 35755082 -206909271 + FRAM SINE Alu 1 160 -16 238 341 42 83 chr1 35757465 35757802 -206906551 - L2 LINE L2 -9 3304 2982 479 325 27 16 chr1 35757934 35758122 -206906231 - MIR SINE MIR -16 246 57 581 325 47 26 chr1 35758263 35758497 -206905856 - MIR SINE MIR -1 261 23 208 284 62 25 chr1 35759031 35759112 -206905241 - L2 LINE L2 -50 3222 3139 1141 266 147 24 chr1 35759142 35759912 -206904441 + L2 LINE L2 2443 3313 0 280 259 0 0 chr1 35760244 35760302 -206904051 + MIR SINE MIR 13 70 -192 418 273 100 40 chr1 35760392 35760589 -206903764 + MIR SINE MIR 21 227 -35 453 301 160 37 chr1 35760763 35760815 -206903538 + L2 LINE L2 2891 2935 -378 222 62 0 0 chr1 35760815 35760847 -206903506 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 453 301 160 37 chr1 35760847 35761169 -206903184 + L2 LINE L2 2935 3311 -2 2522 99 30 35 chr1 35761655 35762058 -206902295 - MSTC LTR MaLR -27 401 1 853 279 25 12 chr1 35762326 35762612 -206901741 + L1ME LINE L1 5484 5770 -351 433 281 37 15 chr1 35762632 35762767 -206901586 - MIR SINE MIR -73 189 52 560 306 86 5 chr1 35763257 35763466 -206900887 + MIR SINE MIR 31 256 -6 256 127 51 25 chr1 35763998 35764077 -206900276 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 243 219 0 39 chr1 35764132 35764287 -206900066 + (TGGA)n Simple_repeat Simple_repeat 3 151 0 297 336 123 20 chr1 35765409 35765552 -206898801 - L1MC4a LINE L1 -1899 5909 5782 2350 77 3 0 chr1 35765552 35765839 -206898514 - AluSc SINE Alu -3 306 19 297 336 123 20 chr1 35765839 35765909 -206898444 - L1MC4a LINE L1 -2026 5782 5721 342 0 0 0 chr1 35765909 35765947 -206898406 + (TG)n Simple_repeat Simple_repeat 1 38 0 297 336 123 20 chr1 35765947 35766024 -206898329 - L1MC4a LINE L1 -2087 5721 5588 664 135 38 173 chr1 35766079 35766264 -206898089 - MER5A DNA MER1_type -13 176 17 385 294 63 36 chr1 35766284 35766665 -206897688 - L1P5 LINE L1 -674 5482 5088 2210 91 56 3 chr1 35767113 35767399 -206896954 - AluSc SINE Alu -8 301 1 2184 128 3 0 chr1 35767543 35767839 -206896514 - AluSx SINE Alu -15 297 1 305 330 78 0 chr1 35768058 35768161 -206896192 + L2 LINE L2 3162 3272 0 2737 170 41 33 chr1 35768173 35768222 -206896131 - MLT2B2 LTR ERVL 0 515 468 201 39 0 0 chr1 35768222 35768248 -206896105 + (TG)n Simple_repeat Simple_repeat 2 27 0 2737 170 41 33 chr1 35768248 35768709 -206895644 - MLT2B2 LTR ERVL -47 468 1 466 245 125 8 chr1 35769859 35770069 -206894284 + MIR SINE MIR 15 252 -10 189 158 0 53 chr1 35770162 35770200 -206894153 - L2 LINE L2 -7 3306 3271 511 267 206 76 chr1 35770496 35771108 -206893245 + L2 LINE L2 2587 3312 -1 653 264 11 36 chr1 35771182 35771391 -206892962 - MIR SINE MIR -60 202 1 2435 60 0 3 chr1 35771504 35771818 -206892535 - AluY SINE Alu 0 313 1 247 319 158 24 chr1 35773596 35773969 -206890384 + L2 LINE L2 1395 1817 -1497 291 276 12 31 chr1 35774089 35774252 -206890101 + (TCTG)n Simple_repeat Simple_repeat 4 163 0 * 330 297 5 32 chr1 35774215 35774400 -206889953 + CT-rich Low_complexity Low_complexity 1 180 0 * 333 258 26 46 chr1 35774275 35774426 -206889927 + (TCTCTG)n Simple_repeat Simple_repeat 3 150 0 559 231 113 0 chr1 35774936 35775096 -206889257 - LTR16C LTR ERVL 0 491 314 405 0 0 0 chr1 35775635 35775680 -206888673 + (CA)n Simple_repeat Simple_repeat 2 46 0 370 361 8 0 chr1 35775914 35776047 -206888306 + L2 LINE L2 2924 3057 -215 195 372 26 9 chr1 35776867 35776980 -206887373 + L2 LINE L2 3196 3310 -3 267 103 0 0 chr1 35776980 35777019 -206887334 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 241 316 24 0 chr1 35777077 35777165 -206887188 + MIR SINE MIR 49 141 -67 517 277 0 0 chr1 35777220 35777332 -206887021 + MIR SINE MIR 1 112 -150 3447 161 43 55 chr1 35777335 35778136 -206886217 - MER21B LTR ERV1 0 931 40 348 271 107 8 chr1 35778162 35778284 -206886069 + MIR SINE MIR 118 251 -11 943 214 73 10 chr1 35778900 35779106 -206885247 - MER20 DNA MER1_type 0 219 1 314 260 150 10 chr1 35779452 35779552 -206884801 - MER5B DNA MER1_type -61 117 4 429 157 10 5 chr1 35779574 35779680 -206884673 + MER5A DNA MER1_type 37 189 0 631 242 26 95 chr1 35780045 35780309 -206884044 - L2 LINE L2 -2 3311 3066 2388 92 0 0 chr1 35780343 35780637 -206883716 + AluSq SINE Alu 1 294 -19 11959 218 40 42 chr1 35780719 35782954 -206881399 - L1MB2 LINE L1 -1 5994 3757 2139 131 0 16 chr1 35782954 35783259 -206881094 - AluSx SINE Alu -12 300 1 11959 218 40 42 chr1 35783259 35786481 -206877872 - L1MB2 LINE L1 -2238 3757 531 1605 196 10 10 chr1 35786481 35786772 -206877581 - AluJo SINE Alu -21 291 1 11959 218 40 42 chr1 35786772 35786867 -206877486 - L1MB2 LINE L1 -5464 531 606 234 0 0 0 chr1 35786867 35786893 -206877460 + (CAA)n Simple_repeat Simple_repeat 2 27 0 11959 218 40 42 chr1 35786893 35786969 -206877384 - L1MB2 LINE L1 -5388 607 532 950 245 47 81 chr1 35787147 35787555 -206876798 - L1MB2 LINE L1 -5497 394 1 715 79 0 0 chr1 35788149 35788238 -206876115 - 5S rRNA rRNA -31 90 2 462 36 0 0 chr1 35789149 35789205 -206875148 + (GA)n Simple_repeat Simple_repeat 1 56 0 491 272 69 39 chr1 35789445 35789677 -206874676 + MIR SINE MIR 18 256 -6 255 271 37 37 chr1 35789698 35789805 -206874548 - L2 LINE L2 -21 3251 3145 713 216 22 78 chr1 35789992 35790224 -206874129 - L2 LINE L2 -1 3312 3094 213 39 0 0 chr1 35790257 35790283 -206874070 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5649 109 4 43 chr1 35790283 35791125 -206873228 - L1PA13 LINE L1 -9 6154 5376 2540 59 0 10 chr1 35791125 35791429 -206872924 - AluSg SINE Alu -9 301 1 5649 109 4 43 chr1 35791429 35791639 -206872714 - L1PA13 LINE L1 -787 5376 5159 378 242 81 0 chr1 35791640 35791739 -206872614 + L1P LINE L1 5002 5108 -1038 240 367 18 0 chr1 35792761 35792870 -206871483 - MIR SINE MIR -62 146 36 285 322 136 0 chr1 35793121 35793239 -206871114 - L2 LINE L2 0 3313 3180 215 125 25 0 chr1 35793528 35793568 -206870785 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 1084 241 20 4 chr1 35793575 35793828 -206870525 + MIR SINE MIR 6 262 0 331 301 17 9 chr1 35794661 35794801 -206869552 + MIR3 SINE MIR 16 156 -52 232 250 0 0 chr1 35795000 35795052 -206869301 + L2 LINE L2 3133 3184 -88 1786 188 100 11 chr1 35795182 35795634 -206868719 + Charlie4a DNA MER1_type 15 506 -2 1374 124 48 0 chr1 35795783 35795992 -206868361 + MER20 DNA MER1_type 1 219 0 181 228 123 61 chr1 35796148 35796262 -206868091 - L2 LINE L2 -202 3070 2950 381 278 8 15 chr1 35796614 35796747 -206867606 + L2 LINE L2 2228 2359 -955 448 321 21 8 chr1 35796817 35797057 -206867296 + L1ME4a LINE L1 4193 4435 -1711 513 259 109 43 chr1 35797107 35797333 -206867020 - MIR SINE MIR -22 240 8 461 126 0 81 chr1 35797389 35797476 -206866877 + MADE1 DNA Mariner 1 80 0 284 247 49 0 chr1 35797501 35797582 -206866771 - L2 LINE L2 0 3272 3188 2352 88 10 0 chr1 35797592 35797897 -206866456 + AluY SINE Alu 1 308 -3 666 297 106 11 chr1 35798136 35798486 -206865867 - L2 LINE L2 0 3313 2931 437 276 15 0 chr1 35798621 35798755 -206865598 - L2 LINE L2 -431 2883 2748 2435 75 0 0 chr1 35798857 35799150 -206865203 + AluY SINE Alu 1 293 -18 582 331 38 26 chr1 35799471 35799818 -206864535 + L1ME4a LINE L1 5314 5664 -457 599 251 11 17 chr1 35800412 35800587 -206863766 + L1ME4a LINE L1 5707 5880 -241 * 673 261 34 14 chr1 35800575 35800815 -206863538 + L1MC4a LINE L1 5695 5946 -356 272 246 251 23 chr1 35801028 35801199 -206863154 + L1ME4a LINE L1 5880 6089 -32 206 241 342 0 chr1 35801314 35801393 -206862960 - L2 LINE L2 0 3313 3208 276 305 0 30 chr1 35802332 35802496 -206861857 - L1M4 LINE L1 -1073 5073 4915 43923 32 21 1 chr1 35802727 35808792 -206855561 - L1PA2 LINE L1 0 6155 1 598 294 111 45 chr1 35808804 35809542 -206854811 - L1M4 LINE L1 -1487 4659 3873 731 268 75 13 chr1 35809662 35809890 -206854463 + MIR SINE MIR 8 249 -13 230 328 16 41 chr1 35809897 35810019 -206854334 - L2 LINE L2 -15 3298 3180 314 250 187 55 chr1 35810171 35810551 -206853802 - L2 LINE L2 -342 2972 2543 262 271 187 13 chr1 35810880 35811035 -206853318 + MER5A DNA MER1_type 1 182 -7 342 326 134 13 chr1 35811051 35811646 -206852707 - L2 LINE L2 -1309 2005 1339 208 255 61 51 chr1 35811741 35811839 -206852514 + MIR SINE MIR 159 257 -5 746 207 116 74 chr1 35813325 35813529 -206850824 - L2 LINE L2 -2 3311 3117 414 0 0 0 chr1 35813529 35813575 -206850778 + (TTA)n Simple_repeat Simple_repeat 3 48 0 2704 43 9 0 chr1 35813575 35813902 -206850451 - L1PA7 LINE L1 -18 6136 5807 746 207 116 74 chr1 35813902 35814059 -206850294 - L2 LINE L2 -195 3118 2934 1270 266 120 30 chr1 35814232 35814897 -206849456 - L2 LINE L2 -421 2893 2169 189 107 0 0 chr1 35815139 35815167 -206849186 + (T)n Simple_repeat Simple_repeat 1 28 0 7669 29 10 0 chr1 35815774 35816854 -206847499 - L1PA4 LINE L1 0 6155 5093 461 285 58 29 chr1 35817231 35817294 -206847059 - MIR SINE MIR -3 259 199 1463 192 0 11 chr1 35817294 35817554 -206846799 - AluJb SINE Alu -55 257 1 461 285 58 29 chr1 35817554 35817697 -206846656 - MIR SINE MIR -63 199 47 259 330 113 5 chr1 35817899 35818084 -206846269 + L2 LINE L2 1612 1816 -1498 8421 55 18 202 chr1 35818096 35819794 -206844559 - SVA Other Other 0 1386 1 936 292 146 56 chr1 35819993 35820210 -206844143 - L1M4 LINE L1 -2660 3486 3290 504 0 0 0 chr1 35820210 35820266 -206844087 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 936 292 146 56 chr1 35820266 35821293 -206843060 - L1M4 LINE L1 -2856 3290 2130 1539 181 139 16 chr1 35821691 35822066 -206842287 - L1M4 LINE L1 -1726 4420 4000 294 265 137 0 chr1 35822536 35822638 -206841715 + MIR SINE MIR 63 178 -84 200 163 23 23 chr1 35822862 35822905 -206841448 + (TATG)n Simple_repeat Simple_repeat 2 44 0 722 206 0 22 chr1 35823051 35823187 -206841166 + FLAM_A SINE Alu 1 133 0 757 218 24 6 chr1 35823245 35823415 -206840938 - L1PB4 LINE L1 -3 6153 5981 2342 58 0 4 chr1 35823423 35823699 -206840654 - AluY SINE Alu -2 309 35 2420 64 0 3 chr1 35823709 35824005 -206840348 - AluY SINE Alu -8 303 9 261 0 0 0 chr1 35824230 35824259 -206840094 + (TA)n Simple_repeat Simple_repeat 1 29 0 247 292 93 25 chr1 35824328 35824489 -206839864 + MIR SINE MIR 41 212 -50 1161 197 0 18 chr1 35824596 35824819 -206839534 + MER20 DNA MER1_type 1 219 0 291 247 103 10 chr1 35824856 35824953 -206839400 + MIR SINE MIR 41 146 -116 240 236 195 49 chr1 35826075 35826198 -206838155 - L2 LINE L2 -4 3309 3169 515 301 44 82 chr1 35826229 35826442 -206837911 + L2 LINE L2 2921 3116 -156 180 0 0 0 chr1 35826442 35826462 -206837891 + (TG)n Simple_repeat Simple_repeat 2 21 0 515 301 44 82 chr1 35826462 35826614 -206837739 + L2 LINE L2 3116 3272 0 2740 138 19 0 chr1 35826992 35827412 -206836941 + MSTA LTR MaLR 1 428 0 262 225 127 0 chr1 35827671 35827742 -206836611 - L1ME4a LINE L1 -97 6024 5945 436 122 95 0 chr1 35829030 35829104 -206835249 - HERV9 LTR ERV1 -4140 4259 4179 521 265 22 27 chr1 35829109 35829294 -206835059 + MIR3 SINE MIR 23 206 -2 693 198 213 92 chr1 35829440 35829778 -206834575 + MLT1J1 LTR MaLR 1 379 -67 217 267 56 11 chr1 35830622 35830712 -206833641 - MIR SINE MIR -63 199 106 291 251 105 27 chr1 35831599 35831737 -206832616 + MIR SINE MIR 18 170 -38 331 301 9 9 chr1 35831847 35831960 -206832393 + L2 LINE L2 3160 3272 0 2225 101 58 23 chr1 35832159 35832505 -206831848 - THE1B LTR MaLR -2 362 5 322 240 158 36 chr1 35832592 35832813 -206831540 + L1ME4a LINE L1 5868 6115 -6 356 274 75 7 chr1 35832891 35833037 -206831316 + L3 LINE CR1 1101 1256 -321 264 233 50 0 chr1 35833574 35833634 -206830719 - MER5A DNA MER1_type -109 80 18 402 264 111 46 chr1 35835011 35835227 -206829126 - MIR SINE MIR -32 230 1 606 270 29 21 chr1 35835453 35835691 -206828662 - MIR SINE MIR -13 249 4 2485 115 3 8 chr1 35836085 35836442 -206827911 + THE1A LTR MaLR 1 355 0 11178 96 28 7 chr1 35836442 35837989 -206826364 + THE1A-int LTR MaLR 1 1580 0 2606 91 8 3 chr1 35837989 35838342 -206826011 + THE1A LTR MaLR 1 355 0 853 209 143 33 chr1 35839470 35839680 -206824673 - MIR SINE MIR -2 260 28 340 157 96 12 chr1 35839736 35839819 -206824534 + THE1-int LTR MaLR 667 756 -824 533 226 110 18 chr1 35839934 35840098 -206824255 - MER20 DNA MER1_type -4 215 37 203 161 0 0 chr1 35840511 35840542 -206823811 + A-rich Low_complexity Low_complexity 5 35 0 246 250 39 29 chr1 35840780 35840884 -206823469 - L1ME4a LINE L1 -22 6099 5995 291 93 0 0 chr1 35841438 35841481 -206822872 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 196 211 0 0 chr1 35841483 35841521 -206822832 - L2 LINE L2 -14 3258 3221 242 284 236 39 chr1 35841581 35841891 -206822462 - L2 LINE L2 -56 3257 2887 207 0 0 0 chr1 35842783 35842806 -206821547 + (CAT)n Simple_repeat Simple_repeat 2 24 0 731 282 21 0 chr1 35842807 35842995 -206821358 - MIR SINE MIR -18 244 53 993 279 29 10 chr1 35844148 35844456 -206819897 + LTR16C LTR ERVL 169 482 -9 875 265 56 20 chr1 35844498 35844747 -206819606 - MIR SINE MIR -3 259 2 526 297 82 58 chr1 35844756 35845086 -206819267 - L2 LINE L2 -14 3258 2921 4660 197 20 15 chr1 35845134 35845982 -206818371 + MER21B LTR ERV1 1 852 -11 2124 55 0 71 chr1 35846438 35846749 -206817604 - AluY SINE Alu -22 289 1 1440 191 7 5 chr1 35846930 35847224 -206817129 + L1MD3 LINE L1 7523 7995 0 514 286 203 9 chr1 35847236 35847463 -206816890 - L3 LINE CR1 -941 636 366 300 328 94 29 chr1 35848134 35848378 -206815975 + L2 LINE L2 1747 2006 -1308 558 221 0 93 chr1 35848394 35848566 -206815787 - L2 LINE L2 0 3313 3158 313 129 0 32 chr1 35848570 35848632 -206815721 - MLT2B1 LTR ERVL 0 520 461 315 0 0 0 chr1 35848658 35848693 -206815660 + (CA)n Simple_repeat Simple_repeat 2 36 0 1001 172 26 21 chr1 35848699 35848891 -206815462 + MER2 DNA MER2_type 18 210 -135 39 0 0 0 chr1 35848891 35848930 -206815423 + AT_rich Low_complexity Low_complexity 1 39 0 238 209 0 0 chr1 35848930 35848973 -206815380 + MER2 DNA MER2_type 280 322 -23 308 24 0 24 chr1 35848978 35849020 -206815333 + (TG)n Simple_repeat Simple_repeat 2 42 0 1198 184 82 48 chr1 35849030 35849390 -206814963 - MLT2B1 LTR ERVL -57 357 1 4261 140 72 78 chr1 35849390 35850277 -206814076 - ERVL-B1 LTR ERVL -7 5757 4876 4423 156 7 4 chr1 35850316 35851009 -206813344 - ERVL-B1 LTR ERVL -784 4980 4286 1385 191 81 45 chr1 35851028 35851385 -206812968 - MLT1A2 LTR MaLR 0 374 5 190 195 24 0 chr1 35851398 35851439 -206812914 - L2 LINE L2 -168 3145 3104 1504 230 40 50 chr1 35853555 35854334 -206810019 - L2 LINE L2 -31 3282 2521 300 331 58 8 chr1 35854336 35854457 -206809896 + L2 LINE L2 3185 3311 -2 2491 210 57 18 chr1 35854688 35855249 -206809104 - MER119 DNA MER1_type 0 583 1 353 22 22 0 chr1 35856110 35856156 -206808197 + (TG)n Simple_repeat Simple_repeat 1 47 0 228 204 0 0 chr1 35856899 35856943 -206807410 - MER103 DNA DNA -121 45 2 2675 199 47 9 chr1 35857022 35857559 -206806794 - MER68 LTR ERV1 0 562 6 310 327 32 121 chr1 35857602 35857975 -206806378 - L2 LINE L2 -50 3222 2883 906 93 0 0 chr1 35857975 35858093 -206806260 + AluY SINE Alu 15 132 -179 1901 104 10 14 chr1 35858096 35858384 -206805969 + AluY SINE Alu 1 287 -24 190 261 34 11 chr1 35858386 35858474 -206805879 - L2 LINE L2 -423 2891 2802 234 321 82 37 chr1 35859283 35859526 -206804827 - L3 LINE CR1 -157 1420 1167 22 0 0 0 chr1 35860018 35860040 -206804313 + AT_rich Low_complexity Low_complexity 1 22 0 1793 173 0 0 chr1 35860046 35860341 -206804012 - AluJo SINE Alu -17 295 1 199 257 40 95 chr1 35860622 35860770 -206803583 - L2 LINE L2 -62 3251 3112 913 291 62 31 chr1 35860778 35860809 -206803544 - MLT1I LTR MaLR -2 407 378 1924 189 94 70 chr1 35860809 35860966 -206803387 + MER74A LTR ERVL 1 153 -405 1569 144 0 109 chr1 35860966 35861314 -206803039 - AluJb SINE Alu -2 310 1 1924 189 94 70 chr1 35861314 35861701 -206802652 + MER74A LTR ERVL 153 558 0 913 291 62 31 chr1 35861701 35862058 -206802295 - MLT1I LTR MaLR -31 378 7 220 333 83 49 chr1 35862094 35862298 -206802055 - L2 LINE L2 -251 3062 2852 694 179 86 19 chr1 35862305 35862467 -206801886 - MER97b DNA MER1_type? -874 179 7 275 333 40 16 chr1 35862501 35862627 -206801726 - L2 LINE L2 -464 2850 2722 258 182 0 0 chr1 35864004 35864048 -206800305 - Charlie5 DNA MER1_type -29 2583 2540 1112 241 48 16 chr1 35864071 35864386 -206799967 - LTR47B LTR ERVL -85 358 34 4248 197 102 20 chr1 35864393 35865359 -206798994 - L1MD2 LINE L1 -9 6350 5305 2553 236 28 31 chr1 35865361 35866141 -206798212 - L1MD2 LINE L1 -2056 4090 3313 439 301 112 25 chr1 35866242 35866438 -206797915 - L1M4 LINE L1 -812 5334 5122 439 290 51 99 chr1 35866459 35866752 -206797601 - MLT1K LTR MaLR 0 588 310 583 222 97 36 chr1 35867696 35867944 -206796409 + HAL1b LINE L1 961 1223 -125 204 327 0 0 chr1 35868372 35868427 -206795926 + L2 LINE L2 3211 3265 -7 207 0 0 0 chr1 35869396 35869419 -206794934 + (T)n Simple_repeat Simple_repeat 1 23 0 1672 143 92 0 chr1 35869822 35870095 -206794258 + AluSx SINE Alu 1 298 -14 1061 168 30 25 chr1 35870707 35870910 -206793443 + MER58A DNA MER1_type 21 224 0 1216 184 10 0 chr1 35870918 35871125 -206793228 - MER3 DNA MER1_type 0 209 1 248 184 20 0 chr1 35871801 35871850 -206792503 + MIR SINE MIR 73 122 -140 448 248 135 8 chr1 35872400 35872533 -206791820 - MIR SINE MIR -7 255 106 273 158 50 129 chr1 35872738 35872839 -206791514 - MER53 DNA DNA 0 189 97 1626 174 16 7 chr1 35872844 35873148 -206791205 - AluJb SINE Alu -5 307 1 315 196 0 0 chr1 35873148 35873204 -206791149 - MER53 DNA DNA -133 56 1 746 293 138 41 chr1 35873529 35874021 -206790332 - L1ME LINE L1 -324 5797 5258 834 290 24 28 chr1 35874875 35875130 -206789223 + MIR SINE MIR 4 257 -5 205 256 0 0 chr1 35875563 35875606 -206788747 + (CA)n Simple_repeat Simple_repeat 2 44 0 199 238 0 0 chr1 35875728 35875770 -206788583 - L2 LINE L2 -1 3312 3271 185 0 40 0 chr1 35876891 35876916 -206787437 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 335 292 52 0 chr1 35876916 35877012 -206787341 - L2 LINE L2 -13 3259 3159 509 340 52 0 chr1 35877039 35877230 -206787123 + MIR SINE MIR 19 219 -43 370 362 82 5 chr1 35877290 35877486 -206786867 + MIR SINE MIR 38 248 -14 180 323 20 50 chr1 35877573 35877672 -206786681 + L2 LINE L2 3156 3251 -21 1648 184 0 14 chr1 35878034 35878328 -206786025 + AluJb SINE Alu 4 293 -19 1020 61 0 0 chr1 35878489 35878620 -206785733 - AluY SINE Alu -179 132 2 1388 117 80 0 chr1 35878635 35878874 -206785479 - Tigger3(Golem) DNA MER2_type -285 2744 2487 1874 121 0 8 chr1 35878890 35879155 -206785198 - AluSq SINE Alu -50 263 1 242 131 66 0 chr1 35879200 35879261 -206785092 - L1MA9 LINE L1 -13 6299 6235 425 156 0 0 chr1 35880402 35880466 -206783887 + AluJ/FLAM SINE Alu 3 66 -246 658 277 89 30 chr1 35880843 35881078 -206783275 + MIR SINE MIR 2 250 -12 314 258 0 0 chr1 35881112 35881174 -206783179 + L2 LINE L2 3252 3313 0 999 182 0 6 chr1 35881246 35881427 -206782926 - MER104 DNA MER2_type 0 180 1 478 346 77 13 chr1 35882441 35882675 -206781678 - MIR SINE MIR -6 256 8 925 260 146 41 chr1 35883029 35883391 -206780962 + L2 LINE L2 2913 3312 -1 399 266 106 35 chr1 35883393 35883619 -206780734 - L2 LINE L2 -374 2940 2699 212 318 45 23 chr1 35883981 35884113 -206780240 + L3 LINE CR1 649 783 -794 * 1084 195 70 0 chr1 35884091 35884306 -206780047 - MIR SINE MIR 0 262 33 1243 283 81 21 chr1 35884562 35885258 -206779095 + L1ME4a LINE L1 5308 6045 -76 1642 179 28 10 chr1 35885529 35885820 -206778533 - AluJo SINE Alu -16 296 1 552 291 92 31 chr1 35885930 35886191 -206778162 + L3 LINE CR1 1218 1494 -83 640 226 14 0 chr1 35886223 35886369 -206777984 - MER104 DNA Tc2 -4 176 29 204 40 0 0 chr1 35886482 35886507 -206777846 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr1 35886541 35886562 -206777791 + AT_rich Low_complexity Low_complexity 1 21 0 1782 38 0 0 chr1 35886563 35886772 -206777581 - L1PA8 LINE L1 -397 5775 5567 2950 60 5 5 chr1 35886772 35887151 -206777202 + L1PA8 LINE L1 5782 6164 -8 24 85 0 0 chr1 35887165 35887224 -206777129 + AT_rich Low_complexity Low_complexity 1 59 0 330 26 0 0 chr1 35887242 35887281 -206777072 + (CA)n Simple_repeat Simple_repeat 2 40 0 205 352 0 0 chr1 35887442 35887513 -206776840 + L3 LINE CR1 1506 1576 -1 268 232 222 20 chr1 35887901 35888000 -206776353 + MIR SINE MIR 30 148 -114 2021 295 103 14 chr1 35888595 35889530 -206774823 - L2 LINE L2 -91 3181 2154 194 250 92 26 chr1 35889774 35889850 -206774503 + L2 LINE L2 3192 3272 0 672 204 0 59 chr1 35890496 35890648 -206773705 - L2 LINE L2 -1 3312 3170 1406 136 20 0 chr1 35890649 35890848 -206773505 + AluSg/x SINE Alu 95 297 -13 651 262 110 12 chr1 35890848 35891176 -206773177 - L2 LINE L2 -135 3178 2819 334 322 79 13 chr1 35891193 35891345 -206773008 - MIR3 SINE MIR -13 195 34 2011 114 29 3 chr1 35891394 35891710 -206772643 + L1MA2 LINE L1 5981 6304 0 404 279 57 77 chr1 35892085 35892332 -206772021 - L2 LINE L2 -46 3226 2985 2581 57 0 22 chr1 35892370 35892687 -206771666 + AluY SINE Alu 1 310 -1 644 248 89 25 chr1 35892725 35892927 -206771426 + MIR SINE MIR 47 261 -1 248 239 15 85 chr1 35892981 35893111 -206771242 - L2 LINE L2 -228 3044 2924 665 357 32 22 chr1 35893157 35893527 -206770826 - L2 LINE L2 -468 2846 2473 664 192 45 45 chr1 35894410 35894566 -206769787 - L2 LINE L2 0 3313 3158 262 281 21 52 chr1 35894706 35894802 -206769551 - L3 LINE CR1 -932 645 553 264 343 22 72 chr1 35894899 35895081 -206769272 + MIR SINE MIR 20 191 -63 314 229 58 8 chr1 35895384 35895518 -206768835 - L1ME4a LINE L1 -14 6097 1196 652 257 165 15 chr1 35895561 35895822 -206768531 - L1ME LINE L1 -338 5783 5484 371 343 88 6 chr1 35897204 35897385 -206766968 + MER117 DNA MER1_type 2 197 0 330 261 124 52 chr1 35898930 35899083 -206765270 - MLT1K LTR MaLR -30 558 395 271 268 14 0 chr1 35899720 35899791 -206764562 + MIR SINE MIR 191 262 0 200 204 23 0 chr1 35900124 35900168 -206764185 + GA-rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr1 35900434 35900457 -206763896 + AT_rich Low_complexity Low_complexity 1 23 0 344 264 104 49 chr1 35900712 35900856 -206763497 - MIR SINE MIR -7 255 104 1403 276 85 35 chr1 35900971 35901773 -206762580 - HAL1b LINE L1 -1 1347 506 421 296 144 11 chr1 35901819 35902103 -206762250 - HAL1b LINE L1 -932 416 95 646 222 0 11 chr1 35902200 35902380 -206761973 + CT-rich Low_complexity Low_complexity 3 180 0 358 312 16 70 chr1 35903326 35903512 -206760841 - L1MC4a LINE L1 -1955 5853 5678 216 218 39 90 chr1 35903515 35903593 -206760760 - MIR SINE MIR -113 149 76 1737 184 13 19 chr1 35903597 35903906 -206760447 + AluJo SINE Alu 1 307 -5 842 213 29 11 chr1 35904431 35904605 -206759748 + MER45A DNA AcHobo 1 177 -1 2349 147 16 54 chr1 35904873 35905316 -206759037 - MSTC LTR MaLR -2 426 1 371 286 286 0 chr1 35906205 35906408 -206757945 + MIR SINE MIR 2 262 0 250 248 9 9 chr1 35906435 35906540 -206757813 + CT-rich Low_complexity Low_complexity 3 107 0 408 197 31 72 chr1 35907087 35907311 -206757042 - L1ME LINE L1 -743 5403 5201 2343 112 0 0 chr1 35908200 35908505 -206755848 - AluSc SINE Alu -2 307 3 393 370 0 8 chr1 35908669 35908796 -206755557 - L2 LINE L2 -13 3259 3134 204 315 74 39 chr1 35909036 35909239 -206755114 + L2 LINE L2 2483 2692 -622 24 53 0 0 chr1 35909966 35910004 -206754349 + AT_rich Low_complexity Low_complexity 1 38 0 287 181 14 0 chr1 35910169 35910241 -206754112 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 2411 78 0 29 chr1 35910396 35910705 -206753648 - AluY SINE Alu -11 300 1 23 0 0 0 chr1 35910915 35910938 -206753415 + AT_rich Low_complexity Low_complexity 1 23 0 200 204 23 0 chr1 35911204 35911248 -206753105 + CT-rich Low_complexity Low_complexity 1 45 0 271 268 14 0 chr1 35911581 35911652 -206752701 - MIR SINE MIR 0 262 191 330 261 124 52 chr1 35912289 35912442 -206751911 + MLT1K LTR MaLR 395 558 -30 371 337 88 6 chr1 35913991 35914172 -206750181 - MER117 DNA MER1_type 0 197 2 652 257 165 15 chr1 35915554 35915815 -206748538 + L1ME LINE L1 5484 5783 -338 314 229 58 8 chr1 35915858 35915992 -206748361 + L1ME4a LINE L1 1196 6097 -14 245 348 22 72 chr1 35916295 35916477 -206747876 - MIR SINE MIR -63 145 20 262 281 21 52 chr1 35916574 35916670 -206747683 + L3 LINE CR1 553 645 -932 664 192 45 45 chr1 35916810 35916966 -206747387 + L2 LINE L2 3158 3313 0 671 336 21 21 chr1 35917849 35918135 -206746218 + L2 LINE L2 2473 2758 -556 248 239 15 85 chr1 35918265 35918395 -206745958 + L2 LINE L2 2924 3044 -228 644 248 89 25 chr1 35918449 35918651 -206745702 - MIR SINE MIR -1 261 47 2581 57 0 22 chr1 35918689 35919006 -206745347 - AluY SINE Alu -1 310 1 404 279 57 77 chr1 35919044 35919291 -206745062 + L2 LINE L2 2985 3226 -46 2011 114 29 3 chr1 35919666 35919982 -206744371 - L1MA2 LINE L1 0 6304 5981 334 322 79 13 chr1 35920031 35920183 -206744170 + MIR3 SINE MIR 34 195 -13 651 262 110 12 chr1 35920200 35920528 -206743825 + L2 LINE L2 2819 3178 -135 1406 136 20 0 chr1 35920528 35920727 -206743626 - AluSg/x SINE Alu -13 299 97 672 204 0 59 chr1 35920728 35920880 -206743473 + L2 LINE L2 3170 3312 -1 1177 116 79 112 chr1 35921165 35921406 -206742947 + AluJb SINE Alu 1 233 -79 515 257 84 59 chr1 35921433 35921913 -206742440 - L1ME LINE L1 -488 5682 5188 215 180 160 0 chr1 35921919 35921969 -206742384 - MIR SINE MIR -118 144 87 1723 158 46 3 chr1 35922387 35922671 -206741682 + AluJo SINE Alu 11 306 -6 525 162 17 117 chr1 35922673 35922852 -206741501 + MER53 DNA DNA 29 189 0 1950 108 0 4 chr1 35923402 35923660 -206740693 - AluSq SINE Alu -21 292 36 3086 218 57 38 chr1 35923674 35924554 -206739799 - L1ME1 LINE L1 -4 6162 5266 22 70 0 0 chr1 35924559 35924602 -206739751 + AT_rich Low_complexity Low_complexity 1 43 0 357 24 0 0 chr1 35924614 35924656 -206739697 + (TA)n Simple_repeat Simple_repeat 2 43 0 783 228 10 25 chr1 35924666 35924868 -206739485 - L1ME1 LINE L1 -1054 5092 4894 547 339 111 14 chr1 35924947 35925236 -206739117 - L2 LINE L2 -1 3312 2996 312 204 23 68 chr1 35925479 35925567 -206738786 - L2 LINE L2 0 3313 3230 333 311 79 57 chr1 35925788 35926103 -206738250 - L2 LINE L2 -819 2495 2174 616 292 94 9 chr1 35926158 35926391 -206737962 + MIR SINE MIR 4 256 -6 266 291 0 13 chr1 35926450 35926529 -206737824 - MIR SINE MIR -156 106 29 418 245 129 17 chr1 35927121 35927274 -206737079 + MIR SINE MIR 20 185 -63 223 283 57 107 chr1 35927557 35927734 -206736619 - L2 LINE L2 -30 3242 3075 374 272 0 22 chr1 35928033 35928125 -206736228 - MIR SINE MIR -139 123 34 502 112 10 10 chr1 35928768 35928866 -206735487 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 1504 196 68 0 chr1 35928870 35929151 -206735202 - AluJo SINE Alu -10 302 3 408 232 11 0 chr1 35929237 35929332 -206735021 + MER5A DNA MER1_type 14 109 -80 328 289 62 10 chr1 35929383 35929480 -206734873 - MER5A DNA MER1_type -14 175 74 2190 97 0 29 chr1 35929489 35929799 -206734554 - AluSx SINE Alu -11 301 1 237 215 77 0 chr1 35930451 35930516 -206733837 + L2 LINE L2 2597 2666 -648 222 304 68 42 chr1 35930816 35931007 -206733346 + L2 LINE L2 2804 2999 -273 493 269 25 118 chr1 35931056 35931335 -206733018 - MIR SINE MIR -9 253 1 328 300 125 46 chr1 35931385 35931665 -206732688 + L2 LINE L2 2359 2660 -654 548 335 61 51 chr1 35931729 35932120 -206732233 + L2 LINE L2 2877 3271 -1 302 231 13 26 chr1 35932121 35932199 -206732154 + MIR SINE MIR 169 245 -17 394 311 273 19 chr1 35932671 35933041 -206731312 + L2 LINE L2 2850 3313 0 196 345 0 0 chr1 35933217 35933275 -206731078 + MIR SINE MIR 35 92 -116 272 258 34 34 chr1 35933393 35933482 -206730871 + MIR3 SINE MIR 117 205 -3 709 212 12 5 chr1 35933738 35933908 -206730445 - MIR SINE MIR 0 262 5 209 180 49 0 chr1 35933924 35933985 -206730368 + (CA)n Simple_repeat Simple_repeat 1 64 0 915 222 19 49 chr1 35934636 35934870 -206729483 + MIR SINE MIR 34 262 0 571 292 128 44 chr1 35934955 35935338 -206729015 + L2 LINE L2 2857 3271 -1 802 279 48 0 chr1 35935444 35935673 -206728680 + MIR SINE MIR 16 255 -7 419 278 142 11 chr1 35936782 35936958 -206727395 - MIR SINE MIR -3 259 61 243 0 0 0 chr1 35938156 35938183 -206726170 + (TG)n Simple_repeat Simple_repeat 2 28 0 349 250 250 0 chr1 35938238 35938354 -206725999 - L2 LINE L2 0 3313 3169 445 256 29 36 chr1 35939055 35939192 -206725161 + MIR SINE MIR 65 200 -62 212 337 67 0 chr1 35939195 35939284 -206725069 + L2 LINE L2 3187 3281 -32 233 288 68 25 chr1 35940135 35940253 -206724100 + L2 LINE L2 3150 3272 0 216 304 52 34 chr1 35940596 35940744 -206723609 + MIR SINE MIR 31 187 -21 185 300 83 0 chr1 35940692 35940752 -206723601 + L3b LINE CR1 1207 1271 -312 * 2443 175 64 25 chr1 35940832 35941318 -206723035 - MLT1D LTR MaLR 0 505 1 678 204 79 7 chr1 35942621 35942773 -206721580 - MIR SINE MIR -12 250 88 342 307 19 14 chr1 35942787 35942911 -206721442 + MIR SINE MIR 3 124 -84 252 86 0 0 chr1 35943442 35943477 -206720876 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 2341 90 23 0 chr1 35943538 35943839 -206720514 - AluSp SINE Alu -5 308 1 180 111 0 0 chr1 35943906 35943933 -206720420 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 776 298 34 4 chr1 35943947 35944182 -206720171 + MIR SINE MIR 8 249 -13 240 111 0 0 chr1 35944198 35944234 -206720119 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 920 203 60 49 chr1 35944234 35944500 -206719853 - MER33 DNA MER1_type -2 322 54 181 363 44 0 chr1 35944516 35944607 -206719746 + L2 LINE L2 2127 2221 -1093 1441 248 115 14 chr1 35944847 35945360 -206718993 - MLT1E LTR MaLR -27 566 2 198 258 81 0 chr1 35947716 35947778 -206716575 + L2 LINE L2 3137 3203 -69 711 241 47 6 chr1 35947832 35948002 -206716351 + MER45A DNA AcHobo 1 177 -1 516 316 30 37 chr1 35948673 35948916 -206715437 - MIR SINE MIR -14 248 3 251 330 11 21 chr1 35949195 35949289 -206715064 - L2 LINE L2 -1 3271 3179 854 222 108 19 chr1 35949296 35949508 -206714845 - MIR SINE MIR -19 243 13 245 294 0 0 chr1 35949549 35949617 -206714736 + MER5B DNA MER1_type 1 68 -110 2122 214 24 50 chr1 35949620 35950238 -206714115 + L1ME1 LINE L1 5521 6122 -44 602 216 32 0 chr1 35950299 35950424 -206713929 + MER5B DNA MER1_type 44 172 -6 1044 226 229 16 chr1 35950651 35951132 -206713221 - L2 LINE L2 0 3313 2725 308 233 0 23 chr1 35951613 35951699 -206712654 - MIR SINE MIR -12 250 167 1839 172 49 0 chr1 35951715 35952063 -206712290 - MSTB1 LTR MaLR 0 432 68 324 242 150 17 chr1 35952077 35952197 -206712156 - MIR SINE MIR -113 149 14 363 298 113 13 chr1 35953068 35953219 -206711134 + L2 LINE L2 3101 3266 -6 486 290 152 40 chr1 35953718 35954065 -206710288 - L2 LINE L2 -59 3254 2838 502 220 18 9 chr1 35954065 35954174 -206710179 + MER81 DNA DNA 2 111 -3 486 290 152 40 chr1 35954174 35954286 -206710067 - L2 LINE L2 -475 2838 2740 258 278 122 11 chr1 35954305 35954395 -206709958 - L2 LINE L2 -25 3247 3148 1446 219 68 15 chr1 35954767 35955332 -206709021 - MLT1E1 LTR MaLR 0 654 1 694 216 8 0 chr1 35955345 35955479 -206708874 - MIR SINE MIR -50 212 78 273 163 0 0 chr1 35955690 35955739 -206708614 + (CA)n Simple_repeat Simple_repeat 2 50 0 1097 291 102 16 chr1 35956361 35957108 -206707245 - L2 LINE L2 -5 3308 2413 1580 150 7 4 chr1 35957175 35957448 -206706905 + L1MB3 LINE L1 5830 6103 -80 346 20 41 0 chr1 35957448 35957497 -206706856 - L1PA6 LINE L1 0 6154 6104 476 101 79 0 chr1 35957497 35957578 -206706775 + L1MB3 LINE L1 6088 6183 0 225 94 0 0 chr1 35957903 35957935 -206706418 + (ATG)n Simple_repeat Simple_repeat 2 33 0 498 279 89 47 chr1 35957975 35958165 -206706188 - MIR SINE MIR -45 217 20 2733 147 12 20 chr1 35958669 35959160 -206705193 - L1MB3 LINE L1 -2 6181 5695 460 235 46 65 chr1 35959384 35959537 -206704816 + MIR SINE MIR 50 199 -63 * 511 261 42 0 chr1 35959534 35959676 -206704677 - MIR SINE MIR -27 235 88 640 261 196 16 chr1 35960342 35960664 -206703689 - MLT1J2 LTR MaLR -69 381 2 186 167 0 0 chr1 35960795 35960831 -206703522 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 695 282 25 86 chr1 35960835 35960950 -206703403 - L2 LINE L2 -2 3311 3191 312 70 0 0 chr1 35960950 35960993 -206703360 + (TG)n Simple_repeat Simple_repeat 2 44 0 695 282 25 86 chr1 35960993 35961317 -206703036 - L2 LINE L2 -122 3191 2899 187 267 53 27 chr1 35961519 35961594 -206702759 + L2 LINE L2 2106 2182 -1132 304 239 115 46 chr1 35961668 35961886 -206702467 - L2 LINE L2 -222 3050 2818 365 0 22 0 chr1 35963240 35963285 -206701068 + (TC)n Simple_repeat Simple_repeat 2 47 0 356 298 209 41 chr1 35963289 35963873 -206700480 - L2 LINE L2 -410 2904 2223 768 259 64 32 chr1 35964418 35964669 -206699684 - MIR SINE MIR 0 262 4 583 316 46 0 chr1 35965660 35965834 -206698519 + MIR SINE MIR 11 192 -70 2212 99 0 51 chr1 35966734 35967048 -206697305 + AluSx SINE Alu 1 298 -14 325 230 126 15 chr1 35967478 35967613 -206696740 + MER103 DNA DNA 8 157 -9 799 208 33 0 chr1 35968292 35968475 -206695878 + MER53 DNA DNA 1 189 0 514 310 127 0 chr1 35968809 35969022 -206695331 + MIR SINE MIR 5 244 -18 725 241 157 5 chr1 35969499 35969690 -206694663 + MER58A DNA MER1_type 4 223 -1 288 0 0 0 chr1 35969707 35969739 -206694614 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr1 35969746 35969773 -206694580 + AT_rich Low_complexity Low_complexity 1 27 0 239 307 107 60 chr1 35969787 35969937 -206694416 - L2 LINE L2 -1 3271 3115 220 270 165 26 chr1 35970252 35970367 -206693986 - L2 LINE L2 -210 3062 2932 215 306 137 33 chr1 35970568 35970751 -206693602 - L2 LINE L2 -526 2788 2587 273 291 185 26 chr1 35970942 35971093 -206693260 + MER5B DNA MER1_type 2 176 -2 430 256 43 43 chr1 35971418 35971582 -206692771 + MIR SINE MIR 34 197 -65 * 485 303 7 26 chr1 35971580 35971735 -206692618 - L2 LINE L2 0 3313 3162 26 74 0 0 chr1 35971795 35971849 -206692504 + AT_rich Low_complexity Low_complexity 1 54 0 227 116 23 0 chr1 35971858 35971901 -206692452 - L2 LINE L2 -1494 1820 1777 233 292 90 0 chr1 35971987 35972076 -206692277 + MIR SINE MIR 166 262 0 478 244 43 90 chr1 35972991 35973225 -206691128 + MIR SINE MIR 21 243 -19 271 262 143 77 chr1 35973248 35973268 -206691085 - MIR SINE MIR -74 188 171 2173 164 63 14 chr1 35973268 35973713 -206690640 + MLT1C LTR MaLR 1 467 0 271 262 143 77 chr1 35973713 35973860 -206690493 - MIR SINE MIR -91 171 10 229 196 39 0 chr1 35975582 35975633 -206688720 + L2 LINE L2 3261 3313 0 286 219 68 0 chr1 35975689 35975762 -206688591 - L2 LINE L2 -31 3282 3205 551 256 115 47 chr1 35975793 35976027 -206688326 - MIR SINE MIR -12 250 1 439 303 186 22 chr1 35976196 35976470 -206687883 + L2 LINE L2 2845 3163 -109 815 288 17 30 chr1 35976485 35976718 -206687635 - MIR SINE MIR -22 240 11 223 346 16 37 chr1 35978175 35978363 -206685990 + L2 LINE L2 1496 1679 -1635 523 241 18 0 chr1 35978442 35978554 -206685799 - MER81 DNA DNA 0 114 1 218 105 26 0 chr1 35978579 35978617 -206685736 + CT-rich Low_complexity Low_complexity 1 39 0 449 244 163 66 chr1 35978618 35978629 -206685724 - L1ME4a LINE L1 0 6121 6112 1988 135 0 32 chr1 35978629 35978941 -206685412 - AluJo SINE Alu 0 312 11 449 244 163 66 chr1 35978941 35979187 -206685166 - L1ME4a LINE L1 -9 6112 5839 247 283 20 30 chr1 35979285 35979384 -206684969 + L2 LINE L2 1908 2005 -1309 443 287 67 12 chr1 35979599 35979763 -206684590 - MER117 DNA MER1_type 0 197 25 345 350 116 37 chr1 35981238 35982000 -206682353 + L2 LINE L2 2066 2887 -427 251 252 136 58 chr1 35983280 35983435 -206680918 + MIR SINE MIR 13 179 -83 180 226 0 75 chr1 35983445 35983498 -206680855 - L2 LINE L2 0 3313 3265 1348 283 93 26 chr1 35983499 35983970 -206680383 - L2 LINE L2 -2 3311 2873 2036 114 0 0 chr1 35983970 35984232 -206680121 + AluSg SINE Alu 42 303 -7 1348 283 93 26 chr1 35984232 35984751 -206679602 - L2 LINE L2 -440 2873 2240 944 263 23 27 chr1 35984995 35985254 -206679099 + MIR SINE MIR 5 262 0 665 237 132 22 chr1 35985282 35985510 -206678843 - MIR SINE MIR -8 254 2 792 245 47 30 chr1 35986013 35986246 -206678107 + MIR SINE MIR 11 247 -15 371 271 42 0 chr1 35987345 35987441 -206676912 + MIR SINE MIR 30 129 -133 824 307 121 25 chr1 35987446 35988025 -206676328 - L2 LINE L2 0 3313 2666 4515 127 6 55 chr1 35988033 35989327 -206675026 + L1MA4A LINE L1 4566 5780 -523 695 186 8 17 chr1 35989327 35989445 -206674908 + FLAM_A SINE Alu 1 117 -16 4515 127 6 55 chr1 35989445 35989710 -206674643 + L1MA4A LINE L1 5780 6056 -247 889 81 16 8 chr1 35989710 35989834 -206674519 - MER1B DNA MER1_type 0 339 215 419 200 137 0 chr1 35989821 35989916 -206674437 - MER1B DNA MER1_type -189 108 1 * 1397 103 20 43 chr1 35989916 35990100 -206674253 + L1MA4A LINE L1 6049 6227 -76 2554 140 59 5 chr1 35990100 35990506 -206673847 - MSTA LTR MaLR 0 428 1 1397 103 20 43 chr1 35990506 35990574 -206673779 + L1MA4A LINE L1 6227 6295 -8 234 127 0 89 chr1 35990510 35990571 -206673782 + L1MA4A LINE L1 6232 6286 -17 800 118 71 35 chr1 35990571 35990741 -206673612 + L1MA7 LINE L1 6116 6291 0 234 127 0 89 chr1 35990741 35990758 -206673595 + L1MA4A LINE L1 6286 6303 0 206 333 158 26 chr1 35990763 35991142 -206673211 - L2 LINE L2 -640 2674 2246 195 290 114 38 chr1 35991981 35992112 -206672241 + L2 LINE L2 2910 3050 -222 188 318 68 23 chr1 35992619 35992751 -206671602 + L2 LINE L2 2868 3005 -308 1461 245 72 33 chr1 35992756 35993099 -206671254 + L2 LINE L2 2510 2838 -475 2038 116 0 41 chr1 35993099 35993417 -206670936 - AluSq SINE Alu -8 305 1 1461 245 72 33 chr1 35993417 35993819 -206670534 + L2 LINE L2 2838 3301 -12 201 74 0 0 chr1 35993820 35993847 -206670506 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 318 355 134 28 chr1 35993850 35994067 -206670286 + L2 LINE L2 3015 3254 -18 379 314 180 35 chr1 35994244 35994677 -206669676 + L2 LINE L2 2238 2733 -581 256 355 38 42 chr1 35994775 35994917 -206669436 - MIR SINE MIR -45 163 20 353 306 10 53 chr1 35995037 35995243 -206669110 + L2 LINE L2 2893 3089 -183 937 273 8 30 chr1 35997553 35997820 -206666533 - MIR SINE MIR -1 261 1 286 279 99 9 chr1 35997853 35997964 -206666389 - L1MC/D LINE L1 -2000 5808 5688 288 53 0 0 chr1 35999240 35999278 -206665075 + (CA)n Simple_repeat Simple_repeat 2 39 0 338 289 66 36 chr1 35999960 36000126 -206664227 + MIR SINE MIR 20 190 -72 1773 156 3 13 chr1 36000552 36000859 -206663494 + AluJb SINE Alu 1 304 -8 193 294 59 0 chr1 36002447 36002515 -206661838 - L2 LINE L2 0 3272 3201 234 232 122 37 chr1 36002543 36002625 -206661728 - L2 LINE L2 0 3272 3184 1463 267 78 5 chr1 36002708 36003116 -206661237 - MLT1K LTR MaLR 0 588 151 186 297 155 87 chr1 36003311 36003530 -206660823 - L2 LINE L2 -389 2925 2692 658 283 133 32 chr1 36004056 36004402 -206659951 - L2 LINE L2 0 3313 2933 184 269 39 39 chr1 36005141 36005219 -206659134 - L2 LINE L2 -7 3306 3229 1721 127 4 4 chr1 36005551 36005810 -206658543 - AluSx SINE Alu -3 309 51 882 298 118 71 chr1 36006098 36006237 -206658116 + L2 LINE L2 1768 1899 -1415 2305 64 0 29 chr1 36006237 36006548 -206657805 + AluY SINE Alu 1 302 -9 882 298 118 71 chr1 36006548 36007453 -206656900 + L2 LINE L2 1899 2861 -453 659 266 25 101 chr1 36007467 36007783 -206656570 - MLT1I LTR MaLR -45 364 73 930 300 146 23 chr1 36007821 36008505 -206655848 + L2 LINE L2 1487 2254 -1060 849 162 0 22 chr1 36008560 36008696 -206655657 + FLAM_A SINE Alu 1 133 0 527 192 42 90 chr1 36008696 36008718 -206655635 - L1MB3 LINE L1 -20 6163 6141 1876 94 68 0 chr1 36008718 36009011 -206655342 + AluY SINE Alu 1 311 0 527 192 42 90 chr1 36009011 36009154 -206655199 - L1MB3 LINE L1 -42 6141 6005 235 241 35 0 chr1 36009149 36009207 -206655146 + L1MB3 LINE L1 5930 5989 -191 * 659 105 1 20 chr1 36009196 36009315 -206655038 - L1MB5 LINE L1 -294 5837 5723 703 284 152 10 chr1 36009444 36009747 -206654606 + L2 LINE L2 2632 2977 -337 366 216 52 0 chr1 36011125 36011222 -206653131 + MER5B DNA MER1_type 74 175 -3 357 313 31 68 chr1 36011494 36011686 -206652667 + MER5A DNA MER1_type 3 187 -2 289 286 59 25 chr1 36011896 36012015 -206652338 - L2 LINE L2 0 3313 3191 259 306 91 41 chr1 36012191 36012312 -206652041 + L2 LINE L2 3183 3309 -4 258 215 101 51 chr1 36012526 36012605 -206651748 - MIR SINE MIR -70 192 110 198 173 19 58 chr1 36012777 36012829 -206651524 - L2 LINE L2 -9 3304 3255 * 421 289 144 12 chr1 36012795 36012869 -206651484 - MIR SINE MIR -18 244 181 2193 100 0 10 chr1 36012869 36013169 -206651184 - AluSq SINE Alu -16 297 1 421 289 144 12 chr1 36013169 36013316 -206651037 - MIR SINE MIR -81 181 5 298 306 52 41 chr1 36013360 36013522 -206650831 + MIR SINE MIR 15 183 -25 190 298 18 0 chr1 36013878 36013935 -206650418 + MIR SINE MIR 96 153 -55 328 274 66 28 chr1 36014171 36014277 -206650076 - MIR3 SINE MIR -84 124 15 387 195 9 20 chr1 36015512 36015620 -206648733 + MIR SINE MIR 37 140 -68 324 319 121 7 chr1 36015719 36015860 -206648493 + MIR SINE MIR 96 252 -10 239 316 211 0 chr1 36016235 36016349 -206648004 - MIR3 SINE MIR -41 167 30 924 258 18 18 chr1 36016654 36016929 -206647424 + L2 LINE L2 2817 3091 -222 372 227 10 21 chr1 36017067 36017164 -206647189 - MIR SINE MIR -55 153 58 418 270 152 38 chr1 36018374 36018585 -206645768 + MIR SINE MIR 28 262 0 202 338 25 0 chr1 36018589 36018669 -206645684 - MIR SINE MIR -75 187 106 1578 279 49 15 chr1 36018924 36019393 -206644960 - LTR16C LTR ERVL -6 485 1 220 209 179 0 chr1 36020317 36020384 -206643969 + MIR SINE MIR 81 159 -103 3453 78 0 2 chr1 36020889 36021339 -206643014 + L1PB2 LINE L1 5702 6150 -1 30 69 0 0 chr1 36021345 36021403 -206642950 + AT_rich Low_complexity Low_complexity 1 58 0 207 0 0 0 chr1 36021594 36021617 -206642736 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7732 24 3 5 chr1 36021618 36023091 -206641262 - L1PA3 LINE L1 -17 6138 4668 22 0 0 0 chr1 36023107 36023129 -206641224 + AT_rich Low_complexity Low_complexity 1 22 0 2321 87 0 0 chr1 36023134 36023444 -206640909 + AluY SINE Alu 1 310 -1 310 231 322 0 chr1 36023500 36023621 -206640732 - L1ME4a LINE L1 0 6121 5962 324 127 0 0 chr1 36023855 36023910 -206640443 + (CA)n Simple_repeat Simple_repeat 2 56 0 1179 296 78 40 chr1 36024048 36024594 -206639759 - L1ME4a LINE L1 -754 5392 4868 2174 67 0 11 chr1 36024594 36024907 -206639446 + AluY SINE Alu 1 310 0 1179 296 78 40 chr1 36024907 36025933 -206638420 - L1ME4a LINE L1 -1278 4868 4101 710 252 169 21 chr1 36026210 36026547 -206637806 - L1ME4a LINE L1 -219 5902 5516 307 325 114 26 chr1 36026580 36026808 -206637545 + MIR SINE MIR 3 250 -12 373 354 88 8 chr1 36027233 36027493 -206636860 + L2 LINE L2 2507 2787 -527 746 284 70 9 chr1 36027608 36027837 -206636516 - MIR SINE MIR -7 255 13 198 167 0 0 chr1 36028196 36028232 -206636121 + (AATTG)n Simple_repeat Simple_repeat 2 37 0 412 254 166 28 chr1 36028456 36028637 -206635716 + MIR SINE MIR 31 236 -26 576 339 141 14 chr1 36028860 36029491 -206634862 - L2 LINE L2 -456 2858 2148 420 204 71 72 chr1 36030245 36030415 -206633938 - MIR SINE MIR -64 198 31 418 295 230 14 chr1 36030440 36030718 -206633635 + L3 LINE CR1 1226 1563 -14 284 179 30 0 chr1 36030800 36030867 -206633486 + GA-rich Low_complexity Low_complexity 1 69 0 228 220 40 0 chr1 36031437 36031487 -206632866 + MIR SINE MIR 61 112 -150 605 249 120 42 chr1 36031494 36031852 -206632501 + L1ME4a LINE L1 5525 5910 -211 228 330 160 0 chr1 36032569 36032663 -206631690 + L2 LINE L2 3122 3230 -42 210 313 152 36 chr1 36033457 36033569 -206630784 - L2 LINE L2 0 3272 3148 584 271 64 16 chr1 36033572 36033760 -206630593 + MIR SINE MIR 64 260 -2 309 231 62 97 chr1 36033761 36033956 -206630397 - MIR SINE MIR -27 235 48 186 212 82 94 chr1 36034902 36034987 -206629366 + MIR3 SINE MIR 111 194 -14 762 259 166 0 chr1 36036951 36037156 -206627197 + MIR SINE MIR 5 243 -19 385 304 65 43 chr1 36037165 36037385 -206626968 - MIR SINE MIR -29 233 10 478 280 75 32 chr1 36037487 36037584 -206626769 + MIR SINE MIR 65 156 -106 2857 195 28 21 chr1 36037584 36038194 -206626159 + MER90 LTR ERV1 1 614 0 478 280 75 32 chr1 36038194 36038282 -206626071 + MIR SINE MIR 156 258 -4 187 264 132 9 chr1 36039267 36039373 -206624980 + MIR SINE MIR 102 220 -42 272 163 0 0 chr1 36039374 36039423 -206624930 + MER90 LTR ERV1 401 449 -126 409 359 111 35 chr1 36039438 36039781 -206624572 - L2 LINE L2 -7 3265 2897 1679 253 88 17 chr1 36039810 36040346 -206624007 - MLT1F1 LTR MaLR 0 567 1 801 230 30 157 chr1 36040347 36040817 -206623536 - MLT1F1-int LTR MaLR -1 1370 961 840 264 109 22 chr1 36041324 36041566 -206622787 - MLT1F1-int LTR MaLR -765 606 386 2056 137 111 28 chr1 36041566 36041758 -206622595 + MSTC LTR MaLR 1 176 -252 1971 142 31 0 chr1 36041758 36042047 -206622306 + AluSg SINE Alu 1 298 -12 2056 137 111 28 chr1 36042047 36042249 -206622104 + MSTC LTR MaLR 176 428 0 840 264 109 22 chr1 36042249 36042472 -206621881 - MLT1F1-int LTR MaLR -985 386 1 1038 201 226 84 chr1 36042492 36042973 -206621380 - MLT1E LTR MaLR -22 571 2 998 158 23 6 chr1 36043989 36044160 -206620193 + MER5A DNA MER1_type 16 189 0 207 328 0 31 chr1 36044463 36044527 -206619826 - L3 LINE CR1 -928 649 588 936 258 92 65 chr1 36044575 36044897 -206619456 + L2 LINE L2 2836 3178 -135 2208 111 0 0 chr1 36044897 36045208 -206619145 - AluSg SINE Alu 0 311 1 936 258 92 65 chr1 36045208 36045348 -206619005 + L2 LINE L2 3178 3313 0 1980 199 53 91 chr1 36046096 36046704 -206617649 - MLT1E LTR MaLR -8 585 1 441 252 86 7 chr1 36046707 36046846 -206617507 - MIR SINE MIR -25 237 88 220 344 0 0 chr1 36047073 36047137 -206617216 - L2 LINE L2 -1890 1424 1361 180 350 43 17 chr1 36047344 36047461 -206616892 + L2 LINE L2 3182 3301 -12 331 248 37 0 chr1 36048036 36048145 -206616208 - MLT1K LTR MaLR -323 265 153 559 154 8 16 chr1 36048654 36048777 -206615576 + CT-rich Low_complexity Low_complexity 2 123 0 189 362 8 39 chr1 36050517 36050644 -206613709 - MIR SINE MIR -61 147 25 477 0 0 0 chr1 36051267 36051320 -206613033 + (CA)n Simple_repeat Simple_repeat 2 54 0 691 254 95 42 chr1 36051557 36052014 -206612339 + LTR33 LTR ERVL 1 514 -7 850 220 58 11 chr1 36052222 36052413 -206611940 - MER58A DNA MER1_type -23 201 2 262 264 14 14 chr1 36052437 36052509 -206611844 + MER112 DNA MER1_type 8 79 -181 450 247 19 82 chr1 36052512 36052670 -206611683 - MIR SINE MIR -10 252 105 284 184 85 135 chr1 36052683 36052824 -206611529 + MER112 DNA MER1_type 121 254 -6 423 240 10 31 chr1 36052888 36052984 -206611369 + MIR SINE MIR 7 100 -162 327 140 53 0 chr1 36053082 36053139 -206611214 + MLT1F1 LTR MaLR 66 125 -442 2459 209 21 12 chr1 36053139 36053712 -206610641 + L1MD3 LINE L1 7404 7981 -14 192 216 0 0 chr1 36053713 36053750 -206610603 + MER5B DNA MER1_type 135 171 -7 234 286 43 14 chr1 36053842 36053912 -206610441 + MER5B DNA MER1_type 2 73 -105 2236 189 18 39 chr1 36054050 36054559 -206609794 + MLT1D LTR MaLR 8 505 0 306 284 0 18 chr1 36054724 36054833 -206609520 + (CTCA)n Simple_repeat Simple_repeat 1 107 0 412 263 50 10 chr1 36055139 36055238 -206609115 - MIR SINE MIR -148 114 12 289 266 90 93 chr1 36055945 36056234 -206608119 + MLT1K LTR MaLR 210 497 -91 843 254 67 13 chr1 36056396 36056620 -206607733 - MIR SINE MIR -15 247 12 303 325 6 66 chr1 36056701 36056867 -206607486 - MIR3 SINE MIR -7 201 46 620 309 132 5 chr1 36057512 36057732 -206606621 - MIR SINE MIR -3 259 12 247 132 19 19 chr1 36058325 36058378 -206605975 - MLT1K LTR MaLR -343 245 193 381 305 169 37 chr1 36059336 36059608 -206604745 - L2 LINE L2 -17 3255 2948 302 399 7 13 chr1 36059609 36059762 -206604591 + L3 LINE CR1 1421 1572 -5 301 180 0 0 chr1 36060365 36060415 -206603938 + L2 LINE L2 3262 3311 -2 840 216 106 34 chr1 36060673 36060881 -206603472 - MER58A DNA MER1_type -1 223 1 552 357 63 36 chr1 36060901 36061265 -206603088 - L2 LINE L2 -35 3237 2864 181 333 16 0 chr1 36061399 36061462 -206602891 - L2 LINE L2 -667 2647 2584 556 246 18 0 chr1 36063190 36063304 -206601049 + MIR SINE MIR 3 118 -144 704 267 87 28 chr1 36063475 36063775 -206600578 - L2 LINE L2 -262 3051 2735 684 183 0 0 chr1 36063902 36064017 -206600336 - FLAM_C SINE Alu -28 115 1 874 238 45 42 chr1 36064019 36064351 -206600002 - L1ME1 LINE L1 -33 6133 5801 779 294 84 29 chr1 36065094 36065512 -206598841 + LTR33 LTR ERVL 1 441 -80 550 294 43 15 chr1 36065743 36065962 -206598391 - MIR SINE MIR -15 247 18 352 251 274 28 chr1 36066054 36066233 -206598120 - MIR SINE MIR -11 251 29 575 338 140 0 chr1 36067024 36067252 -206597101 - MIR SINE MIR -1 261 2 371 264 183 30 chr1 36067316 36067513 -206596840 + L3 LINE CR1 1226 1452 -125 492 270 46 63 chr1 36068283 36068457 -206595896 - MIR SINE MIR -36 226 56 389 305 133 26 chr1 36068526 36068759 -206595594 + MER112 DNA MER1_type 3 260 0 683 275 43 19 chr1 36068874 36069085 -206595268 - MIR SINE MIR -46 216 1 731 164 0 0 chr1 36069198 36069320 -206595033 - MER20 DNA MER1_type 0 219 98 374 168 19 75 chr1 36069356 36069463 -206594890 - MER20 DNA MER1_type -117 102 2 575 267 83 64 chr1 36069554 36069962 -206594391 - LTR33 LTR ERVL -4 517 102 382 219 0 0 chr1 36070036 36070109 -206594244 - LTR33 LTR ERVL -428 93 21 197 283 19 0 chr1 36070362 36070415 -206593938 + MIR SINE MIR 32 85 -123 1549 174 26 13 chr1 36070808 36071119 -206593234 + MER58B DNA MER1_type 23 337 -4 345 268 184 84 chr1 36071220 36071708 -206592645 - L2 LINE L2 -535 2779 2243 401 297 150 59 chr1 36073063 36073383 -206590970 - L2 LINE L2 0 3272 2924 9337 92 1 0 chr1 36076652 36077940 -206586413 + L1P LINE L1 1 1289 -4857 274 80 40 0 chr1 36077958 36078008 -206586345 + T-rich Low_complexity Low_complexity 4 55 0 42769 38 2 1 chr1 36078008 36084143 -206580210 - L1PA3 LINE L1 -10 6145 4 979 48 8 0 chr1 36084143 36084269 -206580084 + L1PA4 LINE L1 6026 6152 -3 331 300 46 54 chr1 36085847 36085977 -206578376 + MIR SINE MIR 69 197 -65 * 1457 265 138 5 chr1 36085976 36086680 -206577673 - L2 LINE L2 -52 3261 2459 625 200 40 20 chr1 36087311 36087461 -206576892 - MLT1H LTR MaLR -396 153 1 244 262 16 0 chr1 36088148 36088209 -206576144 + CT-rich Low_complexity Low_complexity 1 62 0 348 321 0 43 chr1 36088814 36089001 -206575352 + CT-rich Low_complexity Low_complexity 2 180 0 238 258 23 98 chr1 36089527 36089659 -206574694 + MIR SINE MIR 72 193 -69 335 325 50 17 chr1 36091904 36092024 -206572329 + L2 LINE L2 3179 3302 -11 207 0 0 0 chr1 36093075 36093098 -206571255 + (T)n Simple_repeat Simple_repeat 1 23 0 376 316 7 43 chr1 36094079 36094218 -206570135 - L2 LINE L2 0 3272 3139 217 246 51 94 chr1 36095106 36095244 -206569109 + MIR SINE MIR 91 222 -40 421 209 181 0 chr1 36095268 36095373 -206568980 + L2 LINE L2 3188 3311 -2 432 297 40 7 chr1 36095822 36095970 -206568383 + MIR SINE MIR 51 203 -59 274 301 26 26 chr1 36096134 36096247 -206568106 + MIR SINE MIR 28 140 -68 202 217 0 67 chr1 36096795 36096855 -206567498 + L2 LINE L2 3217 3272 0 337 303 62 16 chr1 36097476 36097610 -206566743 + MIR SINE MIR 14 141 -67 195 129 0 0 chr1 36097747 36097778 -206566575 + (TCTCC)n Simple_repeat Simple_repeat 1 31 0 237 338 129 0 chr1 36097936 36098075 -206566278 - MIR SINE MIR -79 183 27 360 185 25 12 chr1 36098183 36098264 -206566089 - L1MC4 LINE L1 0 8042 7961 428 277 66 24 chr1 36098297 36098463 -206565890 - L2 LINE L2 -1231 2083 1911 970 360 41 17 chr1 36099029 36099613 -206564740 - L2 LINE L2 -1791 1523 926 415 301 60 44 chr1 36100875 36101058 -206563295 - MIR SINE MIR -18 244 59 321 235 165 9 chr1 36101424 36101539 -206562814 + L2 LINE L2 3138 3270 -2 329 204 107 10 chr1 36103325 36103428 -206560925 - L1ME3A LINE L1 -234 5936 5824 3651 305 81 29 chr1 36103478 36105885 -206558468 - L1MEd LINE L1 -1479 4650 2119 1481 245 129 48 chr1 36106231 36106273 -206558080 - L1MEd LINE L1 -4592 1537 1500 826 101 39 0 chr1 36106273 36106402 -206557951 - L1PA16 LINE L1 -9 6157 6024 1481 245 129 48 chr1 36106402 36107446 -206556907 - L1MEd LINE L1 -4629 1500 419 1408 212 54 59 chr1 36107754 36108141 -206556212 - MLT1B LTR MaLR -5 385 1 198 0 0 0 chr1 36108162 36108184 -206556169 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 324 311 201 5 chr1 36109169 36109378 -206554975 - L2 LINE L2 -179 3093 2844 659 324 23 27 chr1 36109479 36109741 -206554612 - MIR SINE MIR 0 262 2 340 299 68 8 chr1 36110047 36110164 -206554189 + L2 LINE L2 3149 3272 0 385 277 80 15 chr1 36111592 36111729 -206552624 - MER5A DNA MER1_type -6 183 38 556 291 192 8 chr1 36111785 36112149 -206552204 + L2 LINE L2 2828 3258 -14 262 231 39 0 chr1 36112451 36112529 -206551824 + GA-rich Low_complexity Low_complexity 2 82 0 336 221 13 13 chr1 36112707 36112784 -206551569 - L2 LINE L2 0 3272 3196 224 224 0 0 chr1 36113181 36113230 -206551123 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 585 259 71 25 chr1 36113780 36114029 -206550324 - MLT1J LTR MaLR -19 596 233 773 210 47 70 chr1 36114372 36114586 -206549767 - MER58C DNA MER1_type -6 209 1 248 263 0 0 chr1 36115322 36115379 -206548974 + L2 LINE L2 3210 3266 -6 541 245 66 7 chr1 36116107 36116258 -206548095 + MIR SINE MIR 2 161 -101 5242 57 8 3 chr1 36116266 36117386 -206546967 - MER11A LTR ERVK 0 1266 1 231 273 18 0 chr1 36117400 36117455 -206546898 + MIR SINE MIR 188 243 -19 1129 238 5 0 chr1 36117527 36117750 -206546603 + MER58A DNA MER1_type 1 224 0 213 309 91 51 chr1 36117843 36118018 -206546335 - L2 LINE L2 -17 3255 3074 233 341 67 24 chr1 36119177 36119341 -206545012 + L2 LINE L2 2697 2867 -447 232 302 44 57 chr1 36119395 36119554 -206544799 + L2 LINE L2 2944 3100 -213 392 283 115 53 chr1 36120589 36120833 -206543520 + L2 LINE L2 3005 3263 -9 1837 153 0 7 chr1 36122088 36122388 -206541965 + AluJb SINE Alu 1 298 -14 309 248 227 17 chr1 36122483 36122659 -206541694 - MIR SINE MIR -7 255 36 1514 207 57 94 chr1 36122969 36123032 -206541321 - MLT2B1 LTR ERVL 0 520 456 860 52 52 17 chr1 36123032 36123206 -206541147 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1514 207 57 94 chr1 36123206 36123682 -206540671 - MLT2B1 LTR ERVL -64 456 1 434 259 30 30 chr1 36123830 36123965 -206540388 - MIR3 SINE MIR -7 201 67 320 264 114 70 chr1 36124342 36124543 -206539810 + MIR SINE MIR 32 241 -21 250 300 129 9 chr1 36125318 36125348 -206539005 + MIR SINE MIR 18 43 -219 2292 96 0 0 chr1 36125348 36125650 -206538703 - AluSx SINE Alu -10 302 1 250 300 129 9 chr1 36125650 36125790 -206538563 + MIR SINE MIR 43 211 -51 195 229 86 105 chr1 36125862 36125967 -206538386 + MIR SINE MIR 117 219 -43 1693 206 73 5 chr1 36126594 36126993 -206537360 - MLT1C LTR MaLR -41 426 1 510 255 76 13 chr1 36127137 36127294 -206537059 + MIR SINE MIR 40 206 -56 209 217 43 43 chr1 36127408 36127477 -206536876 + MIR3 SINE MIR 11 79 -129 186 376 45 25 chr1 36127644 36127801 -206536552 + L3 LINE CR1 696 855 -722 415 237 30 23 chr1 36127917 36128048 -206536305 + L3 LINE CR1 1173 1304 -273 551 192 8 56 chr1 36128349 36128474 -206535879 - MIR SINE MIR -119 143 25 235 377 0 0 chr1 36128641 36128718 -206535635 - L2 LINE L2 -5 3267 3191 519 267 128 31 chr1 36128892 36129087 -206535266 + MIR SINE MIR 20 233 -29 486 216 29 0 chr1 36130032 36130134 -206534219 - MLT1C LTR MaLR -362 105 1 1078 224 45 72 chr1 36130256 36130400 -206533953 - MLT1B LTR MaLR -68 322 176 360 43 0 0 chr1 36130400 36130446 -206533907 + (GA)n Simple_repeat Simple_repeat 1 46 0 1078 224 45 72 chr1 36130446 36130632 -206533721 - MLT1B LTR MaLR -214 176 1 244 365 125 24 chr1 36130635 36131060 -206533293 + L2 LINE L2 2346 2813 -501 205 263 18 0 chr1 36131123 36131180 -206533173 + L2 LINE L2 3210 3267 -5 330 279 102 24 chr1 36131311 36131509 -206532844 + MIR SINE MIR 30 245 -17 528 307 118 49 chr1 36132361 36132648 -206531705 - L2 LINE L2 -2 3270 2964 291 282 55 18 chr1 36133649 36133759 -206530594 - L2 LINE L2 -8 3264 3151 284 305 72 87 chr1 36133962 36134296 -206530057 - L2 LINE L2 -6 3266 2938 645 228 129 6 chr1 36134423 36134594 -206529759 - MIR SINE MIR -68 194 3 277 305 142 32 chr1 36134682 36135026 -206529327 - L2 LINE L2 -508 2806 2425 189 351 43 32 chr1 36135135 36135229 -206529124 + L2 LINE L2 3139 3233 -39 423 197 38 76 chr1 36135233 36135365 -206528988 - L2 LINE L2 -5 3308 3182 285 277 213 11 chr1 36135413 36135507 -206528846 + L2 LINE L2 3201 3313 0 818 115 0 0 chr1 36135562 36135675 -206528678 + FRAM SINE Alu 54 166 -10 243 308 47 28 chr1 36135729 36135836 -206528517 - L2 LINE L2 -218 3054 2946 463 293 210 45 chr1 36137010 36138312 -206526041 + L2 LINE L2 945 2461 -853 1217 199 47 73 chr1 36138386 36138809 -206525544 - MER96B DNA MER1_type? 0 417 6 264 335 210 17 chr1 36138810 36138986 -206525367 + L2 LINE L2 3050 3259 -13 252 0 0 0 chr1 36139719 36139747 -206524606 + (CA)n Simple_repeat Simple_repeat 1 28 0 196 137 39 0 chr1 36140165 36140216 -206524137 + CT-rich Low_complexity Low_complexity 1 53 0 185 188 0 0 chr1 36143450 36143482 -206520871 - L2 LINE L2 -98 3174 3143 360 64 0 0 chr1 36145275 36145322 -206519031 + (CA)n Simple_repeat Simple_repeat 2 48 0 996 181 73 15 chr1 36145390 36145595 -206518758 - MER20 DNA MER1_type -1 218 2 389 350 25 20 chr1 36146750 36146950 -206517403 - L1ME LINE L1 -388 5733 5533 282 257 148 10 chr1 36147383 36147484 -206516869 - L2 LINE L2 0 3313 3199 207 200 0 0 chr1 36147632 36147672 -206516681 + (CA)n Simple_repeat Simple_repeat 2 41 0 504 301 62 86 chr1 36148333 36148868 -206515485 - L1ME LINE L1 -1214 4932 4411 451 308 16 0 chr1 36150374 36150511 -206513842 - MER5A DNA MER1_type -8 170 32 349 327 26 18 chr1 36150964 36151077 -206513276 - L2 LINE L2 -26 3246 3133 213 325 50 0 chr1 36153131 36153251 -206511102 - MIR SINE MIR -44 218 93 602 219 47 0 chr1 36153942 36154070 -206510283 - MER94 DNA DNA 0 134 1 2558 74 0 0 chr1 36154224 36154535 -206509818 + AluY SINE Alu 1 311 0 307 287 134 30 chr1 36154622 36154786 -206509567 + L2 LINE L2 2922 3102 -211 392 259 55 93 chr1 36154791 36155140 -206509213 - MLT1I LTR MaLR 0 450 73 294 262 33 49 chr1 36155197 36155319 -206509034 + L2 LINE L2 3128 3247 -66 575 358 103 25 chr1 36155590 36156296 -206508057 - L2 LINE L2 -337 2977 2217 218 214 0 36 chr1 36156446 36156502 -206507851 - L2 LINE L2 -926 2388 2335 4886 30 0 0 chr1 36156533 36157096 -206507257 - L1PA3 LINE L1 -1 6154 5592 457 338 49 21 chr1 36157151 36157435 -206506918 + L2 LINE L2 2819 3110 -203 253 341 176 13 chr1 36157555 36157857 -206506496 - L2 LINE L2 -999 2315 1965 972 156 12 117 chr1 36157955 36158211 -206506142 + AluJo SINE Alu 71 299 -13 393 315 14 24 chr1 36158737 36158950 -206505403 + L2 LINE L2 1169 1379 -1935 442 258 72 45 chr1 36159160 36159287 -206505066 + MER112 DNA MER1_type 33 155 -105 2537 163 9 21 chr1 36159287 36159716 -206504637 - MSTB LTR MaLR -2 424 1 8298 179 74 3 chr1 36159716 36161258 -206503095 - MSTB-int LTR MaLR 0 1651 1 2387 151 57 5 chr1 36161258 36161661 -206502692 - MSTB LTR MaLR 0 426 3 442 258 72 45 chr1 36161661 36161752 -206502601 + MER112 DNA MER1_type 154 259 -1 598 288 44 57 chr1 36161763 36161889 -206502464 + L2 LINE L2 1570 1696 -1618 180 0 0 0 chr1 36161889 36161909 -206502444 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 598 288 44 57 chr1 36161909 36161921 -206502432 + L2 LINE L2 1696 1707 -1607 2030 116 11 25 chr1 36161921 36162206 -206502147 + AluSc SINE Alu 1 281 -28 598 288 44 57 chr1 36162206 36162607 -206501746 + L2 LINE L2 1707 2103 -1211 478 301 84 31 chr1 36162679 36163038 -206501315 - L1M4 LINE L1 -743 5403 5026 646 280 28 19 chr1 36163312 36163526 -206500827 + MIR SINE MIR 14 229 -33 273 275 93 39 chr1 36163610 36163792 -206500561 - L1M4 LINE L1 -1515 4631 4440 520 301 85 33 chr1 36164248 36164446 -206499907 - L1M4 LINE L1 -2998 3148 2962 2521 55 6 6 chr1 36164446 36164757 -206499596 + AluY SINE Alu 1 311 0 520 301 85 33 chr1 36164757 36165007 -206499346 - L1M4 LINE L1 -3184 2962 2677 429 204 19 19 chr1 36165937 36166040 -206498313 + MER5B DNA MER1_type 1 103 -75 320 322 102 68 chr1 36166563 36166827 -206497526 - HAL1b LINE L1 -563 785 513 461 250 43 75 chr1 36167070 36167258 -206497095 - L2 LINE L2 0 3313 3132 694 234 79 9 chr1 36167804 36168018 -206496335 + MIR SINE MIR 19 247 -15 344 333 114 32 chr1 36168727 36169042 -206495311 - L1ME LINE L1 -304 5817 5477 210 227 0 30 chr1 36169204 36169270 -206495083 + T-rich Low_complexity Low_complexity 4 67 0 501 178 72 59 chr1 36169798 36169950 -206494403 - HAL1b LINE L1 -55 1293 1140 219 366 24 8 chr1 36171779 36171902 -206492451 + L2 LINE L2 3148 3272 0 486 184 72 59 chr1 36172207 36172359 -206491994 - HAL1b LINE L1 -55 1293 1140 285 280 11 32 chr1 36172361 36172454 -206491899 + MER5A DNA MER1_type 77 167 -22 443 270 72 22 chr1 36172519 36172741 -206491612 - L3 LINE CR1 -73 1504 1272 195 356 82 20 chr1 36172761 36172907 -206491446 - MIR SINE MIR -1 261 107 322 333 0 0 chr1 36172978 36173074 -206491279 + (TG)n Simple_repeat Simple_repeat 1 96 0 273 323 45 81 chr1 36173655 36173905 -206490448 - MIR SINE MIR -6 256 12 418 244 57 8 chr1 36174133 36174256 -206490097 + MIR SINE MIR 104 232 -30 243 173 0 39 chr1 36175450 36175502 -206488851 + L2 LINE L2 3264 3313 0 260 327 82 0 chr1 36175973 36176083 -206488270 + L2 LINE L2 3185 3303 -10 578 246 126 9 chr1 36176169 36176384 -206487969 + MIR SINE MIR 21 260 -2 2164 63 8 0 chr1 36177329 36177584 -206486769 - AluY SINE Alu -14 297 41 573 162 197 0 chr1 36178174 36178291 -206486062 - MER58B DNA MER1_type 0 341 202 443 277 126 13 chr1 36178481 36178640 -206485713 - MIR SINE MIR -49 213 37 2335 119 0 0 chr1 36179008 36179318 -206485035 - AluSg SINE Alu 0 310 1 651 164 18 0 chr1 36179355 36179465 -206484888 + FRAM SINE Alu 54 165 -11 195 375 62 0 chr1 36179767 36179879 -206484474 - MIR SINE MIR -70 192 74 701 261 77 31 chr1 36179879 36179928 -206484425 - MIR SINE MIR -15 247 202 1907 136 55 33 chr1 36179928 36180295 -206484058 - THE1C LTR MaLR 0 375 1 701 261 77 31 chr1 36180295 36180467 -206483886 - MIR SINE MIR -60 202 16 677 236 39 81 chr1 36180754 36181012 -206483341 + MIR SINE MIR 10 256 -6 1854 203 29 13 chr1 36181132 36181516 -206482837 - MLT1B LTR MaLR 0 390 1 203 213 85 0 chr1 36181544 36181591 -206482762 - L2 LINE L2 -1 3312 3262 2863 238 118 48 chr1 36181758 36184131 -206480222 - L1MC5 LINE L1 -48 7913 5364 1619 32 0 0 chr1 36184153 36184338 -206480015 + L1PA3 LINE L1 5968 6152 -3 29 0 0 0 chr1 36184338 36184367 -206479986 + AT_rich Low_complexity Low_complexity 1 29 0 228 256 165 33 chr1 36185014 36185135 -206479218 + MIR SINE MIR 126 262 0 438 276 98 11 chr1 36185174 36185348 -206479005 + MIR SINE MIR 32 220 -42 430 233 159 37 chr1 36185707 36185870 -206478483 + MIR SINE MIR 45 227 -35 896 272 76 46 chr1 36185970 36186364 -206477989 - MLT1I LTR MaLR 0 409 4 419 290 0 23 chr1 36186573 36186704 -206477649 - L2 LINE L2 0 3272 3145 821 152 116 61 chr1 36187783 36187981 -206476372 - MER58C DNA MER1_type -5 210 2 252 224 31 141 chr1 36189827 36190019 -206474334 - L3 LINE CR1 -11 1566 1396 24 32 0 0 chr1 36190274 36190305 -206474048 + AT_rich Low_complexity Low_complexity 1 31 0 247 260 94 0 chr1 36190313 36190409 -206473944 - L2 LINE L2 -10 3303 3199 228 349 23 23 chr1 36190449 36190578 -206473775 - MER5B DNA MER1_type -49 129 1 481 205 0 0 chr1 36191485 36191568 -206472785 - MER2 DNA MER2_type -262 83 1 715 293 89 17 chr1 36191574 36191932 -206472421 + L1ME4a LINE L1 5615 5998 -123 233 324 69 61 chr1 36192454 36192701 -206471652 - L2 LINE L2 -46 3226 2978 2200 100 3 10 chr1 36192819 36193110 -206471243 + AluSp SINE Alu 1 289 -24 180 0 0 0 chr1 36193114 36193134 -206471219 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 289 290 81 16 chr1 36193519 36193643 -206470710 + L2 LINE L2 3181 3312 -1 337 302 60 55 chr1 36193943 36194178 -206470175 - MIR SINE MIR -14 248 13 267 208 30 89 chr1 36194753 36194854 -206469499 + L2 LINE L2 3154 3248 -24 444 194 0 8 chr1 36195143 36195248 -206469105 - MER5A DNA MER1_type -80 109 6 814 245 0 11 chr1 36195627 36195811 -206468542 + MIR SINE MIR 13 194 -68 229 315 22 33 chr1 36196063 36196247 -206468106 + L2 LINE L2 2147 2328 -986 257 317 41 8 chr1 36196693 36196816 -206467537 + L2 LINE L2 2933 3059 -213 187 244 0 116 chr1 36196916 36197002 -206467351 + L2 LINE L2 3238 3313 0 325 293 28 0 chr1 36199350 36199456 -206464897 + MIR SINE MIR 71 179 -83 725 253 216 18 chr1 36199763 36200151 -206464202 - L2 LINE L2 -19 3294 2830 258 321 47 9 chr1 36200624 36200730 -206463623 + MIR SINE MIR 64 173 -89 276 30 0 0 chr1 36203377 36203410 -206460943 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 205 289 164 0 chr1 36203626 36203730 -206460623 - L2 LINE L2 -30 3242 3122 202 300 42 58 chr1 36203963 36204083 -206460270 + MIR SINE MIR 115 232 -30 1390 147 0 0 chr1 36204994 36205236 -206459117 + AluJb SINE Alu 87 328 0 371 145 14 0 chr1 36206076 36206145 -206458208 + (TG)n Simple_repeat Simple_repeat 2 71 0 740 173 7 0 chr1 36206896 36207046 -206457307 + (CA)n Simple_repeat Simple_repeat 1 151 0 21 0 0 0 chr1 36207540 36207561 -206456792 + AT_rich Low_complexity Low_complexity 1 21 0 326 287 52 12 chr1 36207753 36208004 -206456349 + L1MB8 LINE L1 3092 3352 -2794 432 141 0 0 chr1 36208008 36208072 -206456281 + Alu SINE Alu 234 297 -15 255 255 129 61 chr1 36208075 36208369 -206455984 + L1MB8 LINE L1 3351 3664 -2482 * 1308 197 55 36 chr1 36208337 36208717 -206455636 + L1MA7 LINE L1 5920 6334 0 1573 105 4 42 chr1 36208814 36209053 -206455300 + AluY SINE Alu 74 303 -8 461 100 29 0 chr1 36209131 36209201 -206455152 - MER116 DNA Mariner -8 72 1 546 272 32 43 chr1 36209206 36209552 -206454801 + L1MB8 LINE L1 3864 4205 -1941 840 285 50 32 chr1 36209809 36210203 -206454150 + L1MB8 LINE L1 5327 5720 -450 498 305 44 49 chr1 36210427 36210817 -206453536 + L1ME4a LINE L1 4463 4850 -1296 198 182 30 61 chr1 36210988 36211054 -206453299 - L2 LINE L2 0 3272 3209 338 240 51 61 chr1 36211106 36211302 -206453051 + L1ME4a LINE L1 5805 5998 -123 1434 185 50 57 chr1 36211456 36211915 -206452438 - L1MC5 LINE L1 -299 7662 7207 1888 165 47 33 chr1 36213410 36213504 -206450849 + L1MB8 LINE L1 5738 5829 -349 2391 84 7 0 chr1 36213504 36213800 -206450553 + AluSg SINE Alu 1 298 -12 1888 165 47 33 chr1 36213800 36214129 -206450224 + L1MB8 LINE L1 5829 6167 -11 316 323 39 19 chr1 36214255 36214410 -206449943 + MIR SINE MIR 53 210 -52 183 237 0 0 chr1 36215449 36215487 -206448866 + MIR SINE MIR 109 146 -62 257 343 118 43 chr1 36215970 36216250 -206448103 - L2 LINE L2 -64 3208 2908 228 200 0 0 chr1 36216477 36216522 -206447831 - L2 LINE L2 -37 3235 3191 393 305 94 0 chr1 36217702 36217830 -206446523 - L2 LINE L2 0 3272 3133 4814 145 35 27 chr1 36219047 36219072 -206445281 - L1MB7 LINE L1 -60 6124 6101 2043 141 37 45 chr1 36219072 36219448 -206444905 - THE1C LTR MaLR 0 375 3 4814 145 35 27 chr1 36219448 36219720 -206444633 - L1MB7 LINE L1 -83 6101 5833 2152 119 0 3 chr1 36219720 36220035 -206444318 - AluSp SINE Alu 0 314 1 4814 145 35 27 chr1 36220035 36220599 -206443754 - L1MB7 LINE L1 -351 5833 5254 491 272 115 37 chr1 36221105 36221348 -206443005 + MIR SINE MIR 1 262 0 262 282 54 0 chr1 36221378 36221483 -206442870 + MIR SINE MIR 78 146 -62 326 307 52 18 chr1 36221693 36221819 -206442534 - MIR SINE MIR -63 145 37 318 309 67 66 chr1 36222455 36223053 -206441300 + L2 LINE L2 2678 3272 0 182 244 19 115 chr1 36223415 36223571 -206440782 - L2 LINE L2 -214 3058 2918 229 341 14 73 chr1 36223884 36224104 -206440249 - L1MC4 LINE L1 -36 8006 7800 368 273 8 0 chr1 36224666 36224798 -206439555 + CT-rich Low_complexity Low_complexity 1 133 0 1912 135 31 24 chr1 36224979 36225268 -206439085 - AluSx SINE Alu -21 291 1 23 54 0 0 chr1 36225276 36225313 -206439040 + AT_rich Low_complexity Low_complexity 1 37 0 349 261 87 40 chr1 36225500 36225855 -206438498 - L1MC4a LINE L1 -297 5824 5475 494 269 151 5 chr1 36226660 36226846 -206437507 + MIR SINE MIR 15 227 -35 180 0 0 0 chr1 36227550 36227570 -206436783 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 284 309 59 29 chr1 36227703 36227839 -206436514 - MIR3 SINE MIR -62 146 7 290 242 84 73 chr1 36227854 36228032 -206436321 - L2 LINE L2 -5 3308 3129 219 324 65 28 chr1 36228324 36228432 -206435921 - L2 LINE L2 -3 3269 3158 524 259 171 16 chr1 36228449 36228700 -206435653 - MLT1J LTR MaLR 0 511 222 1667 218 77 51 chr1 36231397 36231820 -206432533 + MLT1D LTR MaLR 1 440 -65 2176 130 0 0 chr1 36231820 36232128 -206432225 - AluSx SINE Alu -4 308 1 1667 218 77 51 chr1 36232128 36232196 -206432157 + MLT1D LTR MaLR 440 505 0 1916 159 7 0 chr1 36232588 36232883 -206431470 + AluSx SINE Alu 1 297 -15 410 214 0 29 chr1 36232921 36233024 -206431329 - MLT1J2 LTR MaLR -2 448 349 225 0 0 0 chr1 36233629 36233654 -206430699 + (A)n Simple_repeat Simple_repeat 1 25 0 1844 73 0 17 chr1 36233656 36233889 -206430464 + AluY SINE Alu 78 306 -5 272 277 102 6 chr1 36233902 36234079 -206430274 + L1M4 LINE L1 2371 2564 -3582 303 323 91 5 chr1 36234152 36234303 -206430050 - MIR SINE MIR -27 235 62 2371 104 0 0 chr1 36234303 36234602 -206429751 + AluSc SINE Alu 1 299 -10 303 323 91 5 chr1 36234602 36234648 -206429705 - MIR SINE MIR -200 62 21 220 224 0 0 chr1 36235436 36235485 -206428868 + T-rich Low_complexity Low_complexity 1 49 0 1118 132 53 5 chr1 36235485 36235674 -206428679 - MSTB1 LTR MaLR -47 385 188 45118 37 5 0 chr1 36235681 36241802 -206422551 - L1PA4 LINE L1 -3 6152 1 189 0 0 0 chr1 36241878 36241899 -206422454 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 213 303 0 13 chr1 36242878 36242954 -206421399 + L2 LINE L2 3008 3082 -190 237 341 0 22 chr1 36243452 36243543 -206420810 - L2 LINE L2 -4 3268 3180 1628 211 56 44 chr1 36243719 36244169 -206420184 - MLT1C LTR MaLR -6 461 7 398 298 166 5 chr1 36244600 36244805 -206419548 + MIR SINE MIR 15 252 -10 379 293 67 72 chr1 36245393 36245968 -206418385 + L2 LINE L2 2615 3263 -9 404 259 54 36 chr1 36246317 36246483 -206417870 + MIR SINE MIR 57 225 -37 264 100 0 0 chr1 36246560 36246600 -206417753 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 225 0 0 0 chr1 36247231 36247256 -206417097 + (CA)n Simple_repeat Simple_repeat 2 26 0 314 293 68 43 chr1 36247258 36247582 -206416771 + L1ME4a LINE L1 4334 4665 -1481 1079 211 173 11 chr1 36248071 36248331 -206416022 + AluSp SINE Alu 2 303 0 468 238 94 129 chr1 36248464 36248960 -206415393 + L1ME4a LINE L1 5122 5595 -526 2171 74 14 21 chr1 36248960 36249279 -206415074 - AluY SINE Alu 0 317 1 468 238 94 129 chr1 36249279 36249401 -206414952 + L1ME4a LINE L1 5595 5720 -401 425 290 89 70 chr1 36249451 36249710 -206414643 + L1ME4a LINE L1 5856 6119 -2 1159 167 16 25 chr1 36249736 36249981 -206414372 + L1MD3 LINE L1 7750 7992 -3 380 366 169 12 chr1 36250999 36251253 -206413100 - L2 LINE L2 -5 3267 2974 186 200 67 0 chr1 36251238 36251283 -206413070 - L2 LINE L2 -1298 2016 1969 * 213 231 112 52 chr1 36251332 36251466 -206412887 - L2 LINE L2 -287 2985 2844 239 217 0 0 chr1 36252752 36252798 -206411555 + L2 LINE L2 2992 3037 -235 298 313 224 9 chr1 36253485 36253699 -206410654 - MIR SINE MIR -1 261 2 539 170 11 0 chr1 36253886 36253980 -206410373 - MER58A DNA MER1_type -5 102 8 230 295 13 0 chr1 36254528 36254606 -206409747 + (TTCA)n Simple_repeat Simple_repeat 4 82 0 1696 204 0 7 chr1 36254914 36255218 -206409135 - AluJo SINE Alu -9 303 2 222 272 11 84 chr1 36255403 36255594 -206408759 + (ATGGTG)n Simple_repeat Simple_repeat 4 180 0 1864 138 0 38 chr1 36256304 36256594 -206407759 - AluJb SINE Alu -12 300 22 590 318 45 9 chr1 36256893 36257113 -206407240 - MIR SINE MIR -6 256 29 482 274 61 24 chr1 36257420 36257584 -206406769 + MIR SINE MIR 14 183 -79 281 156 0 16 chr1 36257616 36257680 -206406673 + CT-rich Low_complexity Low_complexity 2 64 0 814 254 15 50 chr1 36258227 36258447 -206405906 + MIR SINE MIR 43 254 -8 472 307 7 21 chr1 36258454 36258594 -206405759 - MIR SINE MIR -105 157 20 474 293 125 34 chr1 36259409 36259617 -206404736 + MIR SINE MIR 26 252 -10 384 347 24 0 chr1 36260594 36260718 -206403635 - MIR SINE MIR -76 186 60 2188 97 0 29 chr1 36260741 36261049 -206403304 + AluY SINE Alu 1 299 -12 593 202 40 0 chr1 36261052 36261176 -206403177 - L1MB5 LINE L1 -8 6166 6038 442 294 56 14 chr1 36261614 36261757 -206402596 - MIR SINE MIR -6 256 108 521 347 181 17 chr1 36261863 36262699 -206401654 + L2 LINE L2 1724 2696 -618 1369 206 72 9 chr1 36262744 36263099 -206401254 + L1ME2 LINE L1 5783 6162 -2 460 330 70 65 chr1 36263193 36263651 -206400702 + L2 LINE L2 2808 3267 -5 941 172 69 39 chr1 36264025 36264130 -206400223 + MER6B DNA MER2_type 1 101 -764 2189 150 0 0 chr1 36264130 36264436 -206399917 - AluSx SINE Alu -6 306 1 941 172 69 39 chr1 36264436 36264534 -206399819 + MER6B DNA MER2_type 101 210 0 229 250 0 0 chr1 36264659 36264707 -206399646 - L1ME LINE L1 -509 5653 5606 7977 111 16 19 chr1 36264709 36265418 -206398935 - HSMAR2 DNA Mariner -1 1301 596 2500 84 0 0 chr1 36265418 36265717 -206398636 - AluY SINE Alu -12 299 1 7977 111 16 19 chr1 36265717 36266291 -206398062 - HSMAR2 DNA Mariner -706 596 22 195 368 138 24 chr1 36267275 36267615 -206396738 + L2 LINE L2 365 743 -2571 582 221 139 0 chr1 36267750 36267908 -206396445 - MER58A DNA MER1_type 0 224 45 640 332 51 4 chr1 36267920 36268155 -206396198 + MIR SINE MIR 17 262 0 182 341 112 17 chr1 36268263 36268404 -206395949 + MIR SINE MIR 57 220 -42 441 0 0 0 chr1 36268404 36268453 -206395900 + (TG)n Simple_repeat Simple_repeat 2 50 0 182 341 112 17 chr1 36268453 36268490 -206395863 + MIR SINE MIR 220 252 -10 198 245 19 19 chr1 36268748 36268801 -206395552 - MIR SINE MIR -34 228 176 435 19 0 0 chr1 36269861 36269913 -206394440 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 450 351 76 0 chr1 36270130 36270301 -206394052 + MIR SINE MIR 63 246 -16 201 39 0 0 chr1 36271389 36271415 -206392938 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2251 118 13 3 chr1 36271422 36271728 -206392625 - AluSx SINE Alu -1 311 3 507 281 33 0 chr1 36271884 36272005 -206392348 - L2 LINE L2 0 3313 3189 556 276 201 28 chr1 36272464 36272783 -206391570 - L2 LINE L2 0 3313 2940 1077 158 108 5 chr1 36273179 36273382 -206390971 - MER58A DNA MER1_type 0 224 1 270 312 19 58 chr1 36273402 36273607 -206390746 - L1MC4a LINE L1 -1900 5908 5712 354 320 17 46 chr1 36273766 36273941 -206390412 + MIR SINE MIR 47 216 -46 214 329 62 20 chr1 36274134 36274288 -206390065 - L2 LINE L2 -8 3264 3129 516 274 73 57 chr1 36274471 36274719 -206389634 - MLT1J LTR MaLR -40 471 220 706 247 96 15 chr1 36274791 36275269 -206389084 - L2 LINE L2 -15 3298 2695 250 254 0 45 chr1 36275373 36275440 -206388913 + MIR SINE MIR 61 124 -138 350 330 37 0 chr1 36279456 36279565 -206384788 - L2 LINE L2 -7 3265 3153 410 315 134 0 chr1 36279675 36279802 -206384551 - L3 LINE CR1 -3 1574 1431 295 216 165 34 chr1 36280646 36280822 -206383531 - L1ME4a LINE L1 -1 6120 5922 753 283 103 22 chr1 36280853 36281387 -206382966 - L1ME4a LINE L1 -259 5862 5286 776 325 136 23 chr1 36281424 36282033 -206382320 - L1ME4a LINE L1 -906 5240 4563 293 303 37 33 chr1 36282046 36282290 -206382063 - L1ME4a LINE L1 -1602 4544 4300 349 323 67 21 chr1 36282696 36283207 -206381146 - L1ME4a LINE L1 -2954 3192 2659 590 288 61 0 chr1 36283220 36283383 -206380970 + MIR SINE MIR 22 194 -68 384 40 0 0 chr1 36283682 36283732 -206380621 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 210 171 0 24 chr1 36283737 36283778 -206380575 + GA-rich Low_complexity Low_complexity 1 40 0 455 89 0 0 chr1 36283800 36283856 -206380497 - AluS SINE Alu -234 79 24 1571 91 0 0 chr1 36283856 36284054 -206380299 + AluSg/x SINE Alu 100 297 -13 305 335 73 29 chr1 36284725 36285109 -206379244 - HAL1b LINE L1 -739 1654 1288 2273 123 0 0 chr1 36285109 36285411 -206378942 - AluSx SINE Alu -10 302 1 305 335 73 29 chr1 36285411 36285603 -206378750 - HAL1b LINE L1 -1105 1288 65 347 252 184 0 chr1 36286596 36286699 -206377654 - MER94 DNA DNA -11 123 2 248 284 0 19 chr1 36286914 36286994 -206377359 + MIR3 SINE MIR 96 156 -52 217 352 78 7 chr1 36287685 36287827 -206376526 + MIR SINE MIR 21 172 -90 323 313 69 44 chr1 36290078 36290238 -206374115 + L2 LINE L2 3090 3253 -19 2556 161 139 5 chr1 36290508 36291068 -206373285 - L1MB7 LINE L1 -17 6167 5533 324 237 0 0 chr1 36292257 36292316 -206372037 - L2 LINE L2 -5 3308 3250 392 324 90 54 chr1 36292489 36292767 -206371586 - L2 LINE L2 -12 3260 2973 216 0 0 0 chr1 36292967 36292991 -206371362 + (A)n Simple_repeat Simple_repeat 1 24 0 362 289 33 9 chr1 36294077 36294222 -206370131 + L1ME2 LINE L1 5989 6137 -29 253 232 152 20 chr1 36294936 36295035 -206369318 + MIR SINE MIR 33 144 -118 236 266 0 16 chr1 36295718 36295782 -206368571 + CT-rich Low_complexity Low_complexity 2 64 0 2222 117 0 0 chr1 36297260 36297569 -206366784 + AluSx SINE Alu 1 309 -3 266 245 255 0 chr1 36297721 36297823 -206366530 - MIR SINE MIR -11 251 124 487 259 86 35 chr1 36298113 36298310 -206366043 - MIR SINE MIR -14 248 42 30 0 0 0 chr1 36299600 36299630 -206364723 + AT_rich Low_complexity Low_complexity 1 30 0 289 340 83 23 chr1 36300867 36300909 -206363444 + L1ME3A LINE L1 5666 5704 -466 1626 63 5 0 chr1 36300909 36301115 -206363238 + AluY SINE Alu 92 298 -13 289 340 83 23 chr1 36301115 36301337 -206363016 + L1ME3A LINE L1 5704 5946 -224 351 321 54 9 chr1 36301618 36301730 -206362623 + L2 LINE L2 3181 3297 -16 344 245 50 72 chr1 36301759 36301898 -206362455 - L1ME4a LINE L1 -188 5933 5798 23 33 0 0 chr1 36303503 36303533 -206360820 + AT_rich Low_complexity Low_complexity 1 30 0 1980 171 60 0 chr1 36303610 36303944 -206360409 - MLT1A1 LTR MaLR -11 354 1 317 241 114 100 chr1 36303952 36304172 -206360181 - L1ME4a LINE L1 -74 6047 5825 2168 181 57 14 chr1 36304887 36305329 -206359024 - MLT1C LTR MaLR 0 467 7 240 265 24 24 chr1 36307926 36308009 -206356344 + MIR SINE MIR 174 256 -6 469 308 226 0 chr1 36308056 36308264 -206356089 - MIR SINE MIR 0 262 8 217 286 0 0 chr1 36309272 36309321 -206355032 + MIR SINE MIR 97 145 -63 213 319 32 0 chr1 36309683 36309777 -206354576 + L2 LINE L2 1986 2082 -1232 459 310 85 61 chr1 36309812 36310222 -206354131 + L2 LINE L2 2829 3248 -24 569 326 21 16 chr1 36310595 36310788 -206353565 - MIR SINE MIR -36 226 33 904 160 128 16 chr1 36311848 36312036 -206352317 + MER3 DNA MER1_type 1 209 0 372 325 42 0 chr1 36312948 36313068 -206351285 + MIR SINE MIR 7 131 -131 503 305 0 14 chr1 36313574 36313715 -206350638 + MIR3 SINE MIR 32 170 -38 326 233 25 75 chr1 36313712 36313832 -206350521 - MIR SINE MIR -86 176 63 * 581 270 115 35 chr1 36314175 36314401 -206349952 + MIR SINE MIR 13 256 -6 1171 195 53 52 chr1 36314657 36314869 -206349484 + MLT1A1 LTR MaLR 1 153 -212 2014 76 4 0 chr1 36314869 36315132 -206349221 + AluSp SINE Alu 43 306 -7 1171 195 53 52 chr1 36315132 36315346 -206349007 + MLT1A1 LTR MaLR 153 365 0 188 203 186 0 chr1 36315463 36315522 -206348831 - L2 LINE L2 -44 3269 3200 1044 290 110 16 chr1 36315772 36316334 -206348019 - L1ME3A LINE L1 -219 5951 5337 2767 82 8 19 chr1 36316967 36317346 -206347007 + THE1C LTR MaLR 1 375 0 2044 238 174 57 chr1 36317654 36318882 -206345471 + L1MC4 LINE L1 6443 7713 -95 445 323 114 68 chr1 36318959 36319783 -206344570 + HAL1b LINE L1 16 833 -515 375 332 68 61 chr1 36319791 36320112 -206344241 + L1MEc LINE L1 1978 2304 -4092 2113 133 75 23 chr1 36320112 36320458 -206343895 + THE1B LTR MaLR 1 364 0 375 332 68 61 chr1 36320458 36320561 -206343792 + L1MEc LINE L1 2304 2405 -3991 1060 117 14 122 chr1 36320610 36320833 -206343520 - L1MB3 LINE L1 -312 5871 5669 2285 81 0 0 chr1 36320833 36321130 -206343223 - AluY SINE Alu -14 297 1 1060 117 14 122 chr1 36321130 36321172 -206343181 - L1MB3 LINE L1 -514 5669 5624 237 140 40 0 chr1 36321749 36321799 -206342554 + L1M2 LINE L1 5604 5655 -657 1190 173 0 18 chr1 36321957 36322177 -206342176 + AluJo SINE Alu 87 302 -10 2298 93 3 0 chr1 36322510 36322822 -206341531 + AluSp SINE Alu 1 313 0 363 44 0 0 chr1 36323157 36323202 -206341151 + (TG)n Simple_repeat Simple_repeat 1 45 0 271 240 13 0 chr1 36323244 36323319 -206341034 + L1ME4a LINE L1 5985 6060 -61 1789 131 13 52 chr1 36323360 36323666 -206340687 + AluJb SINE Alu 1 294 -18 325 244 99 8 chr1 36324222 36324353 -206340000 + L1ME4a LINE L1 5338 5480 -641 447 373 0 0 chr1 36324356 36324490 -206339863 + L2 LINE L2 3134 3267 -5 451 280 99 25 chr1 36325397 36325833 -206338520 + L1ME4a LINE L1 5653 6120 -1 520 279 77 40 chr1 36326149 36326371 -206337982 + MIR SINE MIR 13 242 -20 220 283 11 65 chr1 36327352 36327444 -206336909 + L2 LINE L2 3186 3272 0 621 271 77 11 chr1 36327795 36327976 -206336377 + MIR SINE MIR 70 262 0 646 315 50 17 chr1 36329045 36329091 -206335262 - MIR SINE MIR -13 249 206 231 88 0 0 chr1 36329091 36329125 -206335228 + (TA)n Simple_repeat Simple_repeat 2 35 0 2050 106 11 0 chr1 36329125 36329407 -206334946 - AluSc SINE Alu -23 286 2 646 315 50 17 chr1 36329407 36329600 -206334753 - MIR SINE MIR -55 207 1 2257 314 36 18 chr1 36330178 36331016 -206333337 - HERV16 LTR ERVL -2443 3321 2469 1360 308 68 43 chr1 36331021 36332007 -206332346 - HERV16 LTR ERVL -2929 2067 994 1582 131 46 72 chr1 36332238 36332544 -206331809 - AluSx SINE Alu 0 312 15 186 250 21 0 chr1 36332592 36332640 -206331713 + MIR SINE MIR 52 100 -162 2369 97 0 0 chr1 36333819 36334130 -206330223 + AluSq SINE Alu 1 311 -2 351 232 0 24 chr1 36334434 36334516 -206329837 + MIR SINE MIR 61 140 -122 1925 132 0 16 chr1 36335185 36335489 -206328864 - AluSx SINE Alu 0 312 14 482 260 0 0 chr1 36335490 36335594 -206328759 + L2 LINE L2 3210 3313 0 399 283 107 16 chr1 36335747 36335959 -206328394 - MIR SINE MIR -32 230 5 223 71 48 0 chr1 36336086 36336128 -206328225 + T-rich Low_complexity Low_complexity 88 131 0 330 247 174 93 chr1 36336947 36337201 -206327152 - L1ME4a LINE L1 -18 6103 5871 2122 98 0 0 chr1 36337201 36337487 -206326866 - AluSx SINE Alu -24 288 3 330 247 174 93 chr1 36337487 36337791 -206326562 - L1ME4a LINE L1 -250 5871 5500 374 325 70 61 chr1 36338134 36338546 -206325807 + L2 LINE L2 113 528 -2786 1672 265 82 63 chr1 36339541 36340522 -206323831 - HAL1 LINE L1 -709 1798 800 600 243 52 78 chr1 36341676 36341944 -206322409 + MER102a DNA MER1_type 38 298 -32 308 345 147 34 chr1 36342515 36342692 -206321661 - L2 LINE L2 0 3272 3076 1469 230 115 20 chr1 36342782 36343174 -206321179 - LTR16A LTR ERVL -6 444 16 1800 115 7 25 chr1 36343352 36343631 -206320722 + AluSx SINE Alu 28 301 -11 351 272 118 15 chr1 36343776 36343912 -206320441 + MER117 DNA MER1_type 7 156 -41 247 311 89 22 chr1 36343934 36344069 -206320284 - MER5B DNA MER1_type -6 172 29 2026 131 3 0 chr1 36345311 36345608 -206318745 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr1 36346295 36346319 -206318034 + AT_rich Low_complexity Low_complexity 1 24 0 883 299 98 24 chr1 36346351 36347358 -206316995 - L1M4 LINE L1 -2955 3191 2110 372 174 0 0 chr1 36347360 36347429 -206316924 - L1MA9 LINE L1 -306 6006 5938 298 297 42 63 chr1 36347443 36347823 -206316530 - HAL1b LINE L1 -938 410 39 23 0 0 0 chr1 36348322 36348345 -206316008 + AT_rich Low_complexity Low_complexity 1 23 0 692 202 0 0 chr1 36349106 36349230 -206315123 + FLAM_A SINE Alu 11 134 -8 629 304 68 41 chr1 36349450 36349670 -206314683 + MIR SINE MIR 13 238 -24 186 43 0 0 chr1 36349676 36349699 -206314654 + (CTG)n Simple_repeat Simple_repeat 1 23 0 201 39 0 0 chr1 36349701 36349727 -206314626 + (ATG)n Simple_repeat Simple_repeat 1 26 0 257 269 30 15 chr1 36349852 36349919 -206314434 - L2 LINE L2 -12 3301 3234 242 404 12 0 chr1 36349911 36350077 -206314276 + L2 LINE L2 1218 1385 -1929 * 433 284 117 0 chr1 36350088 36350250 -206314103 + MIR SINE MIR 17 197 -65 325 344 58 19 chr1 36350283 36350542 -206313811 + L2 LINE L2 1381 1649 -1665 413 274 26 34 chr1 36350563 36350680 -206313673 - L2 LINE L2 -8 3264 3149 2335 133 16 67 chr1 36350778 36351214 -206313139 - MLT2D LTR ERVL 0 414 1 339 264 147 58 chr1 36351594 36351852 -206312501 + L2 LINE L2 1884 2164 -1150 382 307 60 92 chr1 36351937 36352318 -206312035 + L2 LINE L2 2902 3270 -2 340 335 96 11 chr1 36352318 36352506 -206311847 - MIR SINE MIR -57 205 2 1305 309 44 2 chr1 36352923 36353353 -206311000 - L2 LINE L2 -4 3309 2862 236 171 0 0 chr1 36354890 36354925 -206309428 - MLT1L LTR MaLR -221 394 360 399 41 0 0 chr1 36356131 36356180 -206308173 + (TG)n Simple_repeat Simple_repeat 2 50 0 797 262 31 35 chr1 36356468 36356697 -206307656 + MIR SINE MIR 21 248 -14 2781 96 5 5 chr1 36356782 36357157 -206307196 - THE1C LTR MaLR 0 375 1 767 112 0 124 chr1 36357689 36357867 -206306486 - Tigger1 DNA MER2_type -654 1764 1609 11475 101 30 25 chr1 36357899 36359314 -206305039 - Tigger1 DNA MER2_type -1 2417 991 2164 91 0 13 chr1 36359314 36359612 -206304741 + AluSc SINE Alu 10 303 -6 11475 101 30 25 chr1 36359612 36359921 -206304432 - Tigger1 DNA MER2_type -1427 991 685 472 153 0 0 chr1 36359934 36360006 -206304347 + MER20 DNA MER1_type 106 177 -42 * 4413 150 9 4 chr1 36359999 36360685 -206303668 - Tigger1 DNA MER2_type -1729 689 1 319 188 68 21 chr1 36360736 36360839 -206303514 - L1M4 LINE L1 -3890 2256 2148 4231 147 25 44 chr1 36360853 36361656 -206302697 - L1MB7 LINE L1 -17 6167 5380 834 239 200 49 chr1 36361657 36362126 -206302227 - MLT1H1 LTR MaLR -15 540 1 856 273 151 3 chr1 36362343 36362735 -206301618 + L2 LINE L2 2584 3033 -280 286 204 0 0 chr1 36362754 36362803 -206301550 + L2 LINE L2 3222 3270 -2 2010 113 177 8 chr1 36365560 36365922 -206298431 - MSTA LTR MaLR 0 428 6 565 128 0 0 chr1 36366751 36366837 -206297516 - L1MA6 LINE L1 -106 6194 6109 425 113 0 0 chr1 36366837 36366902 -206297451 + L1MA7 LINE L1 6221 6291 0 24 32 0 0 chr1 36366908 36366939 -206297414 + AT_rich Low_complexity Low_complexity 1 31 0 2247 80 0 26 chr1 36367423 36367734 -206296619 + AluSx SINE Alu 1 303 -9 536 132 66 0 chr1 36368171 36368277 -206296076 - L1MB2 LINE L1 -8 6163 6051 561 254 24 18 chr1 36369186 36369355 -206294998 - L1MB2 LINE L1 -108 6063 5894 243 0 0 0 chr1 36369355 36369382 -206294971 + (T)n Simple_repeat Simple_repeat 1 27 0 7166 48 6 44 chr1 36369583 36370725 -206293628 + SVA Other Other 405 1386 0 195 100 0 0 chr1 36370790 36370820 -206293533 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 557 355 99 53 chr1 36370894 36371172 -206293181 + HAL1 LINE L1 824 1088 -1419 1703 127 3 21 chr1 36371172 36371455 -206292898 + AluSx SINE Alu 34 311 -1 557 355 99 53 chr1 36371455 36371853 -206292500 + HAL1 LINE L1 1088 1531 -976 344 301 53 0 chr1 36371853 36371986 -206292367 + HAL1b LINE L1 475 614 -734 1732 160 80 1 chr1 36372107 36372676 -206291677 - L1M3 LINE L1 -593 5590 4969 26 50 0 0 chr1 36372859 36372899 -206291454 + AT_rich Low_complexity Low_complexity 1 40 0 487 270 185 10 chr1 36374325 36374525 -206289828 + MIR SINE MIR 28 262 0 678 234 22 56 chr1 36375674 36375905 -206288448 - ORSL DNA AcHobo 0 275 53 201 147 0 0 chr1 36377245 36377279 -206287074 + (TG)n Simple_repeat Simple_repeat 1 34 0 1694 176 110 6 chr1 36377357 36377711 -206286642 + MLT2D LTR ERVL 6 442 -22 322 170 11 117 chr1 36377751 36377845 -206286508 + L1MC4 LINE L1 6619 6702 -1340 252 160 0 20 chr1 36377918 36377968 -206286385 + MLT2D LTR ERVL 472 520 0 709 274 58 4 chr1 36377984 36378210 -206286143 + MIR SINE MIR 8 245 -17 386 233 33 22 chr1 36380697 36380787 -206283566 - L2 LINE L2 -1 3271 3181 990 162 137 42 chr1 36380787 36381038 -206283315 + MLT1A1 LTR MaLR 1 305 -85 794 289 86 6 chr1 36381299 36381624 -206282729 - L2 LINE L2 -1919 1395 1045 246 62 0 0 chr1 36381624 36381656 -206282697 + (TA)n Simple_repeat Simple_repeat 1 32 0 784 178 22 4 chr1 36381656 36381878 -206282475 - L1MA4A LINE L1 -72 6231 5945 2007 196 57 77 chr1 36381924 36382071 -206282282 + L1MC5 LINE L1 6644 6792 -1169 2355 56 0 38 chr1 36382071 36382391 -206281962 + AluY SINE Alu 1 308 -3 2007 196 57 77 chr1 36382391 36382890 -206281463 + L1MC5 LINE L1 6792 7277 -684 992 223 50 22 chr1 36383040 36383359 -206280994 + L1MC5 LINE L1 7354 7681 -280 511 219 43 74 chr1 36383902 36384064 -206280289 - MIR SINE MIR -3 259 104 1074 138 0 0 chr1 36384856 36385016 -206279337 + FRAM SINE Alu 1 159 -17 545 282 68 63 chr1 36386795 36387223 -206277130 - L1ME4a LINE L1 -27 6094 5665 2192 82 3 0 chr1 36387223 36387514 -206276839 + AluY SINE Alu 1 292 -19 545 282 68 63 chr1 36387514 36387829 -206276524 - L1ME4a LINE L1 -456 5665 5353 312 120 0 0 chr1 36387978 36388028 -206276325 + (CA)n Simple_repeat Simple_repeat 1 50 0 407 297 92 36 chr1 36388131 36388491 -206275862 + L1ME4a LINE L1 5512 5891 -230 183 234 43 0 chr1 36389124 36389171 -206275182 + MIR SINE MIR 100 148 -114 2421 69 0 0 chr1 36389966 36390272 -206274081 + AluY SINE Alu 1 306 -5 471 325 137 22 chr1 36390382 36390791 -206273562 - L2 LINE L2 0 3313 2858 408 293 17 11 chr1 36390795 36391053 -206273300 + L1ME3A LINE L1 5540 5885 -277 752 285 141 47 chr1 36391361 36391894 -206272459 - L2 LINE L2 -479 2835 2253 205 338 91 39 chr1 36392180 36392334 -206272019 - MIR SINE MIR -72 190 29 200 443 18 0 chr1 36392367 36392480 -206271873 - L2 LINE L2 -203 3069 2955 275 290 228 28 chr1 36392755 36392900 -206271453 - L3 LINE CR1 -169 1408 1235 338 281 123 92 chr1 36393817 36394077 -206270276 - L2 LINE L2 -1 3271 3004 744 264 123 9 chr1 36394142 36394354 -206269999 - MIR SINE MIR -25 237 2 284 229 250 7 chr1 36394360 36394500 -206269853 - MER113 DNA MER1_type? -225 296 123 3442 186 68 3 chr1 36394502 36395208 -206269145 - L1MB4 LINE L1 -1 6179 5428 6555 115 11 21 chr1 36395237 36396427 -206267926 - L1MA8 LINE L1 -1 6290 5112 2800 203 47 0 chr1 36396442 36397112 -206267241 - L1MB4 LINE L1 -756 5428 4730 1102 187 0 32 chr1 36397123 36397342 -206267011 + AluJo SINE Alu 85 296 -16 1286 181 43 17 chr1 36397388 36397687 -206266666 - L1MB4 LINE L1 -1433 4713 4407 21 0 0 0 chr1 36397706 36397727 -206266626 + AT_rich Low_complexity Low_complexity 1 21 0 354 283 119 44 chr1 36397749 36397908 -206266445 + MIR SINE MIR 72 242 -20 468 278 29 28 chr1 36398191 36398371 -206265982 - MIR SINE MIR -69 139 11 1000 71 0 0 chr1 36398525 36398652 -206265701 - AluY SINE Alu -9 302 176 1514 232 78 11 chr1 36398672 36399107 -206265246 + Charlie4a DNA MER1_type 33 496 -12 293 341 31 8 chr1 36399663 36399792 -206264561 - L3 LINE CR1 -472 1105 974 314 315 138 9 chr1 36399793 36399951 -206264402 + MIR SINE MIR 17 191 -71 471 335 23 38 chr1 36399957 36400220 -206264133 - MIR SINE MIR -2 260 2 3544 121 21 31 chr1 36400340 36400503 -206263850 - L1MA7 LINE L1 0 6291 6128 2228 92 3 0 chr1 36400503 36400795 -206263558 + AluSq SINE Alu 1 293 -20 3544 121 21 31 chr1 36400795 36401250 -206263103 - L1MA7 LINE L1 -163 6128 5679 326 290 108 54 chr1 36401755 36402019 -206262334 + L1ME LINE L1 5194 5480 -698 423 271 72 32 chr1 36402059 36402310 -206262043 + L1ME LINE L1 5547 5807 -314 189 355 13 26 chr1 36403059 36403135 -206261218 + MER5A DNA MER1_type 43 117 -72 706 218 48 12 chr1 36404544 36404709 -206259644 - MIR SINE MIR 0 262 92 202 200 140 20 chr1 36405426 36405476 -206258877 - MIR SINE MIR -88 174 119 333 298 95 38 chr1 36405846 36406004 -206258349 + HAL1b LINE L1 683 849 -499 1125 152 47 21 chr1 36406054 36406245 -206258108 - MER20 DNA MER1_type -1 218 23 300 293 50 45 chr1 36406371 36406569 -206257784 + L1MC5 LINE L1 2365 2563 -3977 232 319 72 32 chr1 36406701 36406980 -206257373 + L1MC5 LINE L1 2693 2982 -3558 504 259 228 4 chr1 36407109 36407341 -206257012 + L1MC5 LINE L1 5650 5933 -2269 594 171 9 0 chr1 36407363 36407474 -206256879 + L1PB4 LINE L1 6042 6153 -3 5314 136 8 14 chr1 36407547 36407689 -206256664 + L1PB3 LINE L1 5299 5440 -714 2209 97 3 3 chr1 36407689 36407998 -206256355 + AluSx SINE Alu 1 309 -3 5314 136 8 14 chr1 36407998 36408711 -206255642 + L1PB3 LINE L1 5440 6149 -5 1847 195 51 34 chr1 36408737 36409204 -206255149 + L1MC5 LINE L1 7357 7831 -524 349 289 90 26 chr1 36409359 36409515 -206254838 + MIR SINE MIR 95 260 -2 399 286 27 27 chr1 36409532 36409679 -206254674 - L2 LINE L2 -2796 518 372 826 163 0 15 chr1 36409679 36409814 -206254539 - AluSq/x SINE Alu -179 134 2 2828 93 3 3 chr1 36410389 36410764 -206253589 - THE1C LTR MaLR 0 375 1 559 75 32 65 chr1 36413316 36413409 -206250944 + FLAM_C SINE Alu 37 126 -17 199 140 40 20 chr1 36413796 36413846 -206250507 + A-rich Low_complexity Low_complexity 5 55 0 192 258 94 74 chr1 36416169 36416425 -206247928 + L2 LINE L2 2244 2504 -810 197 279 50 90 chr1 36417895 36418117 -206246236 + L3 LINE CR1 1243 1455 -122 230 200 120 0 chr1 36418344 36418394 -206245959 + MIR SINE MIR 119 174 -88 706 218 48 12 chr1 36419112 36419277 -206245076 + MIR SINE MIR 92 262 0 3985 133 40 32 chr1 36419432 36420109 -206244244 - L1MB3 LINE L1 -173 6010 5329 1438 220 0 3 chr1 36420114 36420427 -206243926 - L1MB3 LINE L1 -866 5280 4969 26 50 0 0 chr1 36420610 36420650 -206243703 + AT_rich Low_complexity Low_complexity 1 40 0 474 270 185 10 chr1 36422077 36422277 -206242076 + MIR SINE MIR 28 262 0 1581 176 3 33 chr1 36422945 36423247 -206241106 + AluJo SINE Alu 1 293 -19 423 258 123 26 chr1 36423610 36423878 -206240475 - L1MC4a LINE L1 -1633 6175 5882 410 321 31 21 chr1 36423878 36424071 -206240282 + MARNA DNA Mariner 244 438 -148 3312 161 54 52 chr1 36424308 36425006 -206239347 + L1MC1 LINE L1 5 704 -5722 * 8543 181 30 40 chr1 36424997 36425186 -206239167 + L1MC1 LINE L1 3352 3541 -3072 1552 175 10 20 chr1 36425186 36425489 -206238864 + AluJb SINE Alu 3 302 -10 8543 181 30 40 chr1 36425489 36425977 -206238376 + L1MC1 LINE L1 3541 4032 -2581 1995 123 0 13 chr1 36425977 36426277 -206238076 + AluSg SINE Alu 1 296 -14 8543 181 30 40 chr1 36426277 36427205 -206237148 + L1MC1 LINE L1 4032 4967 -1646 783 176 0 22 chr1 36427205 36427341 -206237012 - FLAM_C SINE Alu 0 133 1 8543 181 30 40 chr1 36427341 36429030 -206235323 + L1MC1 LINE L1 4967 6613 0 254 88 0 0 chr1 36429528 36429562 -206234791 - MIR3 SINE MIR -49 159 126 727 265 51 10 chr1 36430173 36430369 -206233984 + MIR SINE MIR 58 261 -1 1008 92 0 0 chr1 36430538 36430669 -206233684 - AluJb SINE Alu -181 131 1 1178 250 16 4 chr1 36430829 36431081 -206233272 + MIR SINE MIR 2 256 -6 394 282 18 9 chr1 36431879 36431989 -206232364 + MIR SINE MIR 151 261 -1 880 281 161 18 chr1 36432246 36432793 -206231560 + L2 LINE L2 2164 2788 -526 227 189 0 57 chr1 36433103 36433156 -206231197 + L2 LINE L2 3246 3295 -18 306 294 40 135 chr1 36433669 36433965 -206230388 + L2 LINE L2 2985 3252 -20 330 341 72 0 chr1 36434242 36434380 -206229973 - L2 LINE L2 -8 3305 3158 233 266 25 38 chr1 36434773 36434852 -206229501 - MIR SINE MIR -14 248 171 2282 76 0 32 chr1 36434928 36435243 -206229110 + AluSg SINE Alu 1 305 -5 303 315 79 45 chr1 36435562 36435740 -206228613 - MIR SINE MIR -74 188 5 419 293 8 32 chr1 36435778 36435901 -206228452 + MIR3 SINE MIR 2 121 -87 394 293 141 37 chr1 36436076 36436267 -206228086 - Charlie8 DNA MER1_type -2203 214 4 644 241 80 27 chr1 36436634 36436821 -206227532 + MER117 DNA MER1_type 1 197 0 494 349 71 40 chr1 36436976 36437300 -206227053 - L2 LINE L2 -3 3269 2936 212 274 98 20 chr1 36437403 36437505 -206226848 - L2 LINE L2 -528 2786 2677 201 74 0 0 chr1 36437630 36437657 -206226696 + (TAGG)n Simple_repeat Simple_repeat 4 30 0 612 270 100 50 chr1 36438615 36438867 -206225486 + MIR SINE MIR 6 262 0 218 302 0 0 chr1 36438867 36438930 -206225423 + MIR SINE MIR 200 262 0 624 284 39 29 chr1 36438991 36439195 -206225158 + MIR SINE MIR 1 206 -56 725 292 15 15 chr1 36439246 36439448 -206224905 + MIR SINE MIR 56 257 -5 833 143 0 23 chr1 36439450 36439583 -206224770 + FLAM_C SINE Alu 3 132 -11 233 255 0 0 chr1 36439651 36439698 -206224655 + MIR SINE MIR 216 262 0 539 277 36 24 chr1 36439834 36440000 -206224353 - MIR SINE MIR -74 188 21 268 225 0 150 chr1 36440548 36440668 -206223685 - Charlie7 DNA MER1_type -3 2609 2508 681 245 118 15 chr1 36440669 36440873 -206223480 - MIR SINE MIR -8 254 30 237 153 306 24 chr1 36440882 36440967 -206223386 - Charlie7 DNA MER1_type -2502 110 2 524 289 88 36 chr1 36441003 36441252 -206223101 - L2 LINE L2 -160 3112 2851 360 138 0 0 chr1 36441576 36441634 -206222719 + AluSp/q SINE Alu 238 295 -8 2288 77 3 0 chr1 36444949 36445248 -206219105 + AluSq SINE Alu 1 300 -13 432 265 88 14 chr1 36445255 36445402 -206218951 + MIR SINE MIR 23 180 -82 1664 189 43 37 chr1 36445662 36445891 -206218462 - MSTB LTR MaLR 0 426 193 1307 88 0 88 chr1 36445891 36446117 -206218236 - L1PA13 LINE L1 0 6163 5958 1664 189 43 37 chr1 36446117 36446236 -206218117 - MSTB LTR MaLR -233 193 76 475 188 18 45 chr1 36446645 36446757 -206217596 - LTR67 LTR ERVL -3 554 446 201 74 0 0 chr1 36447017 36447044 -206217309 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 1789 138 33 0 chr1 36447044 36447320 -206217033 - AluJo SINE Alu -27 285 1 590 274 7 0 chr1 36447553 36447706 -206216647 - MIR3 SINE MIR -7 201 48 197 232 36 0 chr1 36448457 36448513 -206215840 - MIR SINE MIR -1 261 204 2085 74 11 11 chr1 36448520 36448790 -206215563 - AluY SINE Alu -2 309 40 2068 123 3 32 chr1 36448795 36449111 -206215242 - AluSx SINE Alu -5 307 1 1768 259 45 54 chr1 36450860 36451433 -206212920 + L2 LINE L2 2153 2718 -596 2010 127 0 31 chr1 36451433 36451774 -206212579 + AluSx SINE Alu 1 332 0 1768 259 45 54 chr1 36451774 36452030 -206212323 + L2 LINE L2 2718 2975 -339 255 133 0 0 chr1 36452081 36452126 -206212227 + (TG)n Simple_repeat Simple_repeat 2 46 0 1019 238 114 42 chr1 36452504 36452687 -206211666 - L2 LINE L2 -18 3295 3127 2647 58 0 0 chr1 36452687 36452996 -206211357 + AluY SINE Alu 1 309 -2 1019 238 114 42 chr1 36452996 36453443 -206210910 - L2 LINE L2 -186 3127 2635 1903 165 0 3 chr1 36453562 36453877 -206210476 + AluJb SINE Alu 1 314 0 248 275 29 0 chr1 36453945 36454014 -206210339 + (TATG)n Simple_repeat Simple_repeat 4 74 0 182 274 48 0 chr1 36454017 36454079 -206210274 + MIR SINE MIR 51 115 -147 1078 269 133 11 chr1 36454114 36454582 -206209771 + MLT1G1 LTR MaLR 3 595 0 288 0 0 0 chr1 36454801 36454833 -206209520 + (TC)n Simple_repeat Simple_repeat 2 33 0 2067 104 0 73 chr1 36455325 36455642 -206208711 - AluSx SINE Alu -8 304 11 1797 174 19 80 chr1 36456008 36456423 -206207930 - MLT1B LTR MaLR 0 390 1 184 175 0 0 chr1 36457012 36457052 -206207301 - L2 LINE L2 -1 3312 3273 625 178 51 4 chr1 36457076 36457273 -206207080 - MLT1D LTR MaLR 0 505 251 7245 115 12 16 chr1 36457312 36457472 -206206881 - L1MA2 LINE L1 0 6304 6145 234 0 0 0 chr1 36457472 36457498 -206206855 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2199 116 0 0 chr1 36457498 36457782 -206206571 - AluSx SINE Alu -28 284 1 7245 115 12 16 chr1 36457782 36458807 -206205546 - L1MA2 LINE L1 -157 6147 5121 693 84 11 0 chr1 36458867 36458962 -206205391 - L1PB1 LINE L1 -3 6148 6053 921 130 0 0 chr1 36458967 36459105 -206205248 + L1PB1 LINE L1 5387 5524 -627 * 1627 88 18 9 chr1 36459096 36459324 -206205029 + L1PB1 LINE L1 5814 6043 -108 * 10980 182 19 8 chr1 36459320 36460607 -206203746 - L1PB1 LINE L1 -441 5710 4440 297 0 0 0 chr1 36460607 36460640 -206203713 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 10980 182 19 8 chr1 36460640 36462094 -206202259 - L1PB1 LINE L1 -1711 4440 2932 382 39 0 0 chr1 36462150 36462201 -206202152 - AluY SINE Alu 0 302 252 * 1181 202 5 0 chr1 36462179 36462392 -206201961 - MLT1D LTR MaLR -291 214 1 1476 242 101 29 chr1 36462725 36463201 -206201152 + LTR33 LTR ERVL 12 521 0 2207 93 21 0 chr1 36463514 36463804 -206200549 + AluSp SINE Alu 1 296 -17 255 224 60 0 chr1 36464640 36464707 -206199646 + MLT1J LTR MaLR 105 175 -336 344 244 111 56 chr1 36464720 36464900 -206199453 + MLT1J LTR MaLR 299 488 -23 340 176 0 99 chr1 36465077 36465168 -206199185 + MLT1L LTR MaLR 1 82 -533 2431 121 25 0 chr1 36465511 36465866 -206198487 - THE1B LTR MaLR 0 364 1 511 298 56 20 chr1 36466081 36466279 -206198074 - MIR SINE MIR -26 236 32 529 291 40 10 chr1 36466324 36466523 -206197830 + MIR SINE MIR 27 231 -31 301 344 33 0 chr1 36467385 36467507 -206196846 + L2 LINE L2 3109 3234 -38 277 364 45 23 chr1 36467641 36467817 -206196536 - MIR3 SINE MIR -14 194 15 354 210 49 0 chr1 36468008 36468089 -206196264 + MIR SINE MIR 79 163 -99 542 313 73 13 chr1 36468241 36468474 -206195879 + MLT1I LTR MaLR 161 407 -2 592 261 83 46 chr1 36468600 36468637 -206195716 - MLT1J LTR MaLR -8 442 408 554 138 0 0 chr1 36468637 36468717 -206195636 + MADE1 DNA Mariner 1 80 0 592 261 83 46 chr1 36468717 36469061 -206195292 - MLT1J LTR MaLR -42 408 46 607 168 5 43 chr1 36469116 36469301 -206195052 + GA-rich Low_complexity Low_complexity 3 180 0 631 270 45 60 chr1 36469318 36469518 -206194835 - MER63A DNA MER1_type -6 204 8 2181 121 7 0 chr1 36470035 36470341 -206194012 - AluSx SINE Alu -4 308 1 205 341 0 22 chr1 36470459 36470550 -206193803 + MIR SINE MIR 20 108 -154 285 250 14 0 chr1 36470770 36470842 -206193511 + L2 LINE L2 3179 3251 -21 196 0 56 56 chr1 36470850 36470886 -206193467 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1897 164 3 3 chr1 36472575 36472880 -206191473 + AluJb SINE Alu 1 305 -7 552 251 139 9 chr1 36473030 36473253 -206191100 - MIR SINE MIR 0 262 11 420 261 0 0 chr1 36473279 36473367 -206190986 + MER5A DNA MER1_type 81 168 -21 211 221 106 62 chr1 36474047 36474160 -206190193 - L2 LINE L2 -1 3312 3195 288 228 25 13 chr1 36474483 36474562 -206189791 + MIR SINE MIR 53 132 -76 2315 183 36 9 chr1 36474855 36475302 -206189051 + MLT1C LTR MaLR 1 459 -8 214 288 17 0 chr1 36475526 36475585 -206188768 + L3b LINE CR1 1278 1337 -246 219 182 23 0 chr1 36475619 36475663 -206188690 - L2 LINE L2 -1 3312 3268 368 258 81 28 chr1 36475773 36475971 -206188382 + MIR SINE MIR 5 259 -3 452 239 70 7 chr1 36476084 36476226 -206188127 - MIR SINE MIR -65 197 47 817 265 14 5 chr1 36476429 36476644 -206187709 - MIR SINE MIR -44 218 2 261 57 0 0 chr1 36476719 36476754 -206187599 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 36477378 36477399 -206186954 + AT_rich Low_complexity Low_complexity 1 21 0 716 198 128 12 chr1 36477445 36477617 -206186736 - MIR SINE MIR -59 203 12 1468 181 99 14 chr1 36477789 36478071 -206186282 + AluJo SINE Alu 1 306 -6 2294 102 3 0 chr1 36478183 36478487 -206185866 + AluSq SINE Alu 1 305 -8 490 275 0 8 chr1 36478740 36478860 -206185493 + MIR SINE MIR 35 153 -109 288 297 8 39 chr1 36478928 36479056 -206185297 + MIR SINE MIR 60 183 -79 282 264 36 49 chr1 36479180 36479297 -206185056 + MIR SINE MIR 36 151 -79 209 125 0 0 chr1 36479330 36479362 -206184991 + MIR SINE MIR 225 256 -6 22 35 0 0 chr1 36479898 36479927 -206184426 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 36480029 36480050 -206184303 + GC_rich Low_complexity Low_complexity 1 21 0 429 298 60 82 chr1 36481008 36481324 -206183029 - L2 LINE L2 -27 3245 2937 308 240 306 0 chr1 36482537 36482658 -206181695 + MIR SINE MIR 51 208 -54 204 314 58 16 chr1 36482725 36482846 -206181507 - L2 LINE L2 -1097 2217 2092 364 308 73 65 chr1 36482959 36483313 -206181040 - L2 LINE L2 -1250 2064 1708 550 215 153 57 chr1 36483463 36483691 -206180662 - MIR SINE MIR -12 250 1 1058 185 6 6 chr1 36483700 36483878 -206180475 + MER45A DNA AcHobo 1 178 0 386 132 66 66 chr1 36485011 36485087 -206179266 - MLT1F1 LTR MaLR 0 567 430 222 315 45 0 chr1 36485222 36485311 -206179042 + L2 LINE L2 3174 3266 -6 266 287 139 0 chr1 36485654 36485755 -206178598 + L2 LINE L2 3199 3313 0 21 36 0 0 chr1 36486044 36486072 -206178281 + AT_rich Low_complexity Low_complexity 1 28 0 2165 107 7 7 chr1 36486737 36487047 -206177306 - AluSg SINE Alu 0 310 1 402 312 40 25 chr1 36487720 36487919 -206176434 + MIR SINE MIR 12 213 -49 184 315 183 19 chr1 36488482 36488695 -206175658 - L2 LINE L2 0 3272 3025 430 293 59 70 chr1 36489796 36489956 -206174397 - MIR SINE MIR 0 262 105 1700 182 52 3 chr1 36489956 36490247 -206174106 + AluJo SINE Alu 3 307 -5 430 293 59 70 chr1 36490247 36490342 -206174011 - MIR SINE MIR -157 105 10 1483 206 59 73 chr1 36490777 36490956 -206173397 + MLT1D LTR MaLR 3 183 -322 2695 30 0 0 chr1 36490956 36491252 -206173101 + AluY SINE Alu 1 296 -15 1483 206 59 73 chr1 36491252 36491578 -206172775 + MLT1D LTR MaLR 183 501 -4 829 222 75 48 chr1 36491673 36491925 -206172428 - MIR SINE MIR 0 262 4 6426 246 68 20 chr1 36492058 36494261 -206170092 - L1MEc LINE L1 -2444 3771 1365 2511 69 0 28 chr1 36494261 36494579 -206169774 - AluY SINE Alu -2 309 1 6426 246 68 20 chr1 36494579 36496001 -206168352 - L1MEc LINE L1 -4850 1365 12 378 0 0 0 chr1 36496645 36496687 -206167666 + (TG)n Simple_repeat Simple_repeat 1 42 0 2253 99 0 3 chr1 36497598 36497921 -206166432 + AluSx SINE Alu 1 322 0 368 236 64 36 chr1 36498506 36498616 -206165737 + MIR SINE MIR 5 117 -145 1616 198 74 37 chr1 36498620 36499005 -206165348 - L1M4 LINE L1 -1843 4303 3897 2166 103 3 7 chr1 36499005 36499305 -206165048 + AluSc SINE Alu 1 299 -10 1616 198 74 37 chr1 36499305 36499378 -206164975 - L1M4 LINE L1 -2249 3897 3828 207 0 0 0 chr1 36499391 36499414 -206164939 + (CAA)n Simple_repeat Simple_repeat 2 24 0 296 272 88 0 chr1 36501295 36501431 -206162922 - L1ME4a LINE L1 -6 6115 5968 393 302 171 16 chr1 36501537 36501782 -206162571 - L1ME4a LINE L1 -316 5805 5523 2297 98 0 19 chr1 36502100 36502416 -206161937 + AluSg SINE Alu 1 310 0 235 302 56 79 chr1 36503347 36503473 -206160880 + L1MEd LINE L1 506 628 -5491 754 252 67 67 chr1 36503566 36504089 -206160264 + L1MEd LINE L1 722 1244 -4875 468 205 18 0 chr1 36504198 36504310 -206160043 + L1MEd LINE L1 2123 2236 -3893 406 214 0 22 chr1 36504312 36504401 -206159952 + MER20 DNA MER1_type 1 87 -132 1203 258 61 20 chr1 36504507 36505375 -206158978 + L1MEd LINE L1 2254 3215 -2914 2217 128 0 7 chr1 36505375 36505680 -206158673 + AluSx SINE Alu 2 304 -8 1203 258 61 20 chr1 36505680 36505793 -206158560 + L1MEd LINE L1 3215 3322 -2807 358 232 322 13 chr1 36505980 36506213 -206158140 + L2 LINE L2 3004 3308 -5 1193 309 109 8 chr1 36506650 36507180 -206157173 - L2 LINE L2 -883 2431 1848 2471 77 0 0 chr1 36507441 36507741 -206156612 + AluSc SINE Alu 2 301 -8 1965 70 60 46 chr1 36507744 36508029 -206156324 + AluY SINE Alu 1 289 -22 1658 273 94 19 chr1 36508115 36509193 -206155160 - L1ME3A LINE L1 -219 5951 4800 669 189 0 63 chr1 36509194 36509353 -206155000 + MER63 DNA MER1_type 12 786 -276 270 194 42 0 chr1 36509452 36509524 -206154829 - L1ME3A LINE L1 -1444 4702 4628 2406 76 0 0 chr1 36509529 36509820 -206154533 - AluY SINE Alu -20 291 1 198 0 0 0 chr1 36509903 36509925 -206154428 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 227 298 15 38 chr1 36509970 36510101 -206154252 - L1MC/D LINE L1 -1871 5937 5810 999 255 29 0 chr1 36510179 36510422 -206153931 + MIR SINE MIR 11 260 -2 816 279 109 34 chr1 36510469 36510917 -206153436 - L1MC/D LINE L1 -2052 5756 5275 293 358 72 24 chr1 36511543 36511750 -206152603 - MIR SINE MIR 0 262 46 343 210 50 0 chr1 36512315 36512415 -206151938 - L1ME4a LINE L1 -43 6078 5974 24 53 0 0 chr1 36512850 36512888 -206151465 + AT_rich Low_complexity Low_complexity 1 38 0 243 275 133 1 chr1 36513276 36513381 -206150972 + MIR SINE MIR 27 131 -77 409 211 202 9 chr1 36513418 36513532 -206150821 - MER5A DNA MER1_type -7 182 47 754 255 48 5 chr1 36513690 36513898 -206150455 - MIR SINE MIR -34 228 12 367 234 26 88 chr1 36515140 36515367 -206148986 - L1MC4 LINE L1 -1 8041 7829 261 0 0 0 chr1 36515386 36515415 -206148938 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2153 194 124 22 chr1 36515420 36515966 -206148387 - L1ME2 LINE L1 -10 6154 5553 278 252 13 113 chr1 36515966 36515995 -206148358 - MER5B DNA MER1_type -35 143 113 1672 151 35 51 chr1 36515995 36516306 -206148047 + AluJo SINE Alu 1 306 -6 278 252 13 113 chr1 36516306 36516435 -206147918 - MER5B DNA MER1_type -65 113 1 367 268 134 0 chr1 36516624 36516721 -206147632 + MIR SINE MIR 37 146 -62 279 173 0 0 chr1 36518657 36518709 -206145644 + (TG)n Simple_repeat Simple_repeat 1 52 0 488 152 32 29 chr1 36519633 36519760 -206144593 + MER5A DNA MER1_type 1 189 0 182 265 0 0 chr1 36519761 36519795 -206144558 - MER5A DNA MER1_type -107 82 49 494 275 53 6 chr1 36519995 36520166 -206144187 + MER58C DNA MER1_type 22 200 -15 640 259 6 17 chr1 36520700 36520874 -206143479 - L3 LINE CR1 -91 1486 1315 234 91 0 0 chr1 36521772 36521805 -206142548 + (T)n Simple_repeat Simple_repeat 1 33 0 252 105 0 0 chr1 36622081 36622119 -206042234 - L1MA3 LINE L1 -5 6300 6263 1030 158 15 71 chr1 36622284 36622359 -206041994 + MER5A DNA MER1_type 2 80 -109 2456 100 0 3 chr1 36622359 36622669 -206041684 + AluSq SINE Alu 1 309 -4 1030 158 15 71 chr1 36622669 36622789 -206041564 + MER5A DNA MER1_type 80 186 -3 703 216 30 0 chr1 36623333 36623467 -206040886 + MIR SINE MIR 47 184 -78 455 221 66 33 chr1 36623492 36623614 -206040739 + MIR SINE MIR 68 193 -69 2295 107 13 10 chr1 36623615 36623925 -206040428 - AluSx SINE Alu -1 311 1 528 271 29 29 chr1 36624099 36624269 -206040084 + MIR SINE MIR 2 171 -91 3869 256 125 38 chr1 36624400 36626201 -206038152 + L2 LINE L2 1275 3270 -43 323 291 7 78 chr1 36626253 36626305 -206038048 + MIR SINE MIR 117 171 -91 2459 101 0 0 chr1 36626305 36626611 -206037742 - AluSg SINE Alu -4 306 1 323 291 7 78 chr1 36626611 36626699 -206037654 + MIR SINE MIR 171 247 -15 422 301 14 34 chr1 36627083 36627229 -206037124 + MIR SINE MIR 108 250 -12 396 270 60 76 chr1 36627294 36627386 -206036967 + MIR SINE MIR 32 121 -141 2510 83 3 13 chr1 36627386 36627699 -206036654 - AluSq SINE Alu -2 311 2 396 270 60 76 chr1 36627699 36627791 -206036562 + MIR SINE MIR 121 213 -49 27 29 0 0 chr1 36627819 36627853 -206036500 + AT_rich Low_complexity Low_complexity 1 34 0 200 139 0 93 chr1 36628099 36628142 -206036211 + L2 LINE L2 3233 3271 -1 276 330 102 25 chr1 36628686 36628883 -206035470 - L2 LINE L2 -683 2631 2420 3802 126 44 16 chr1 36628936 36628947 -206035406 - L1MC1 LINE L1 -429 5904 5895 2183 129 0 7 chr1 36628947 36629257 -206035096 - AluSq SINE Alu -1 312 5 3802 126 44 16 chr1 36629257 36629935 -206034418 - L1MC1 LINE L1 -438 5895 5186 2274 116 0 13 chr1 36629935 36630245 -206034108 - AluSx SINE Alu -4 308 3 3802 126 44 16 chr1 36630245 36630334 -206034019 - L1MC1 LINE L1 -1147 5186 5101 586 260 68 7 chr1 36630347 36630493 -206033860 + L2 LINE L2 3112 3266 -47 1198 257 142 52 chr1 36630605 36631395 -206032958 + L1MEd LINE L1 285 1145 -4974 253 167 10 128 chr1 36631399 36631501 -206032852 - LTR50 LTR ERVL -17 771 667 432 305 17 0 chr1 36631772 36631890 -206032463 + MIR3 SINE MIR 68 187 -21 1243 279 90 7 chr1 36632225 36632765 -206031588 + L1ME2 LINE L1 5369 5952 -210 347 210 48 156 chr1 36632974 36633175 -206031178 + L1MC5 LINE L1 7324 7545 -416 686 233 0 0 chr1 36633175 36633308 -206031045 + FLAM_C SINE Alu 1 133 0 347 210 48 156 chr1 36633308 36633353 -206031000 + L1MC5 LINE L1 7545 7593 -368 2192 120 0 3 chr1 36633353 36633645 -206030708 + AluSx SINE Alu 2 292 -20 347 210 48 156 chr1 36633645 36633858 -206030495 + L1MC5 LINE L1 7593 7734 -227 225 0 0 0 chr1 36633925 36633950 -206030403 + (CA)n Simple_repeat Simple_repeat 1 25 0 2245 132 3 0 chr1 36634164 36634475 -206029878 - AluSx SINE Alu 0 312 1 2141 129 0 3 chr1 36635450 36635744 -206028609 + AluSx SINE Alu 1 293 -19 270 216 167 10 chr1 36636038 36636140 -206028213 + L1ME4a LINE L1 5816 5933 -188 310 330 0 11 chr1 36636734 36636825 -206027528 - MIR SINE MIR -81 127 38 435 262 19 9 chr1 36637101 36637208 -206027145 + MIR SINE MIR 36 143 -119 436 244 92 43 chr1 36637260 36637424 -206026929 + MIR SINE MIR 8 179 -83 2885 121 2 46 chr1 36638139 36638377 -206025976 + Tigger2a DNA MER2_type 1 211 -2497 2233 123 0 0 chr1 36638377 36638669 -206025684 + AluSx SINE Alu 1 292 -20 2885 121 2 46 chr1 36638669 36638884 -206025469 + Tigger2a DNA MER2_type 211 434 0 321 226 157 25 chr1 36638884 36639088 -206025265 - L1ME4a LINE L1 -21 6100 5870 228 246 0 72 chr1 36639591 36639660 -206024693 + MIR SINE MIR 89 152 -110 254 342 18 9 chr1 36640069 36640180 -206024173 - MIR SINE MIR -65 143 32 374 278 150 9 chr1 36640205 36640399 -206023954 + MIR SINE MIR 34 250 -12 2060 156 6 13 chr1 36640480 36640794 -206023559 + AluJo SINE Alu 1 312 0 291 316 160 11 chr1 36641764 36641951 -206022402 + L2 LINE L2 2840 3054 -218 211 191 0 56 chr1 36642131 36642266 -206022087 + (CAGCC)n Simple_repeat Simple_repeat 1 127 0 413 237 4 185 chr1 36642647 36642879 -206021474 + MER91B DNA MER1_type 1 190 0 4433 101 25 28 chr1 36642936 36642982 -206021371 + L1MA8 LINE L1 5570 5615 -676 1966 156 0 0 chr1 36642982 36643271 -206021082 + AluSx SINE Alu 5 293 -19 4433 101 25 28 chr1 36643271 36643948 -206020405 + L1MA8 LINE L1 5615 6291 0 425 267 149 56 chr1 36644190 36644238 -206020115 - MIR SINE MIR -14 248 206 1080 219 37 0 chr1 36644238 36644453 -206019900 - MER58A DNA MER1_type 0 224 2 425 267 149 56 chr1 36644453 36644599 -206019754 - MIR SINE MIR -56 206 36 399 311 122 0 chr1 36644727 36644891 -206019462 - MIR SINE MIR -56 206 23 892 153 0 15 chr1 36645065 36645202 -206019151 - AluJo SINE Alu -177 135 1 21 0 0 0 chr1 36645202 36645223 -206019130 + AT_rich Low_complexity Low_complexity 1 21 0 613 276 191 5 chr1 36645230 36645440 -206018913 - MIR SINE MIR -12 250 2 561 301 198 47 chr1 36645471 36646512 -206017841 - L2 LINE L2 -18 3295 2090 2254 107 0 3 chr1 36646782 36647072 -206017281 + AluSg SINE Alu 1 289 -21 2391 86 7 0 chr1 36647085 36647387 -206016966 + AluSp SINE Alu 1 304 -9 424 317 50 55 chr1 36647605 36647807 -206016546 - L1ME3A LINE L1 -8 6162 5962 716 289 89 23 chr1 36647935 36648402 -206015951 - L1ME3A LINE L1 -353 5809 5300 398 221 14 107 chr1 36648706 36648744 -206015609 - MIR SINE MIR -33 229 189 2243 121 0 13 chr1 36648744 36648922 -206015431 - AluSg SINE Alu -1 309 135 2125 130 7 3 chr1 36648922 36649222 -206015131 - AluSg SINE Alu -9 301 1 2243 121 0 13 chr1 36649222 36649356 -206014997 - AluSg SINE Alu -175 135 1 398 221 14 107 chr1 36649356 36649457 -206014896 - MIR SINE MIR -73 189 103 1069 246 188 34 chr1 36649490 36650002 -206014351 - L2 LINE L2 0 3313 2741 773 171 201 0 chr1 36651176 36651340 -206013013 + L1MB7 LINE L1 5929 6125 -59 2472 71 0 0 chr1 36651346 36651642 -206012711 - AluY SINE Alu -15 296 1 2146 107 48 0 chr1 36651642 36651932 -206012421 - AluSq SINE Alu -9 304 1 352 164 74 59 chr1 36652104 36652205 -206012148 + MIR SINE MIR 73 172 -63 2187 121 3 0 chr1 36652412 36652701 -206011652 + AluSx SINE Alu 1 290 -22 668 193 0 36 chr1 36653070 36653210 -206011143 + L2 LINE L2 3179 3313 0 541 308 139 51 chr1 36653521 36653930 -206010423 - L2 LINE L2 0 3272 2828 266 245 118 10 chr1 36654087 36654189 -206010164 + MIR SINE MIR 68 180 -82 1084 222 10 5 chr1 36654514 36654721 -206009632 - MIR SINE MIR -25 237 30 384 283 143 26 chr1 36655484 36655714 -206008639 - L2 LINE L2 -457 2857 2601 227 333 0 67 chr1 36655694 36655829 -206008524 + MIR SINE MIR 80 205 -57 * 206 250 104 0 chr1 36655928 36655976 -206008377 - MIR SINE MIR -145 117 65 188 268 167 25 chr1 36656068 36656266 -206008087 - L2 LINE L2 -243 3029 2804 219 276 40 0 chr1 36656308 36656384 -206007969 - L2 LINE L2 -601 2713 2635 659 291 62 26 chr1 36656610 36656837 -206007516 + MIR SINE MIR 22 256 -6 661 184 160 66 chr1 36658222 36658275 -206006078 - L1MB7 LINE L1 -20 6233 6186 2094 114 6 50 chr1 36658275 36658592 -206005761 + AluSx SINE Alu 3 305 -7 661 184 160 66 chr1 36658592 36658750 -206005603 - L1MB7 LINE L1 -67 6186 6002 8450 63 6 1 chr1 36659051 36660941 -206003412 + L1PA6 LINE L1 4223 6141 -13 3127 199 102 105 chr1 36660952 36661279 -206003074 - L1MB7 LINE L1 -743 5472 5145 1024 225 0 0 chr1 36661279 36661452 -206002901 - FAM SINE Alu -2 173 1 3127 199 102 105 chr1 36661452 36661966 -206002387 - L1MB7 LINE L1 -1070 5145 4631 2181 134 0 7 chr1 36661966 36662273 -206002080 - AluSx SINE Alu -7 305 1 3127 199 102 105 chr1 36662273 36662406 -206001947 - L1MB7 LINE L1 -1584 4631 4499 1833 182 0 3 chr1 36662406 36662703 -206001650 - AluJo SINE Alu -16 296 1 3127 199 102 105 chr1 36662703 36663274 -206001079 - L1MB7 LINE L1 -1716 4499 4053 * 4958 168 23 25 chr1 36663261 36665047 -205999306 + L1MA9 LINE L1 4480 6274 -38 4933 239 58 14 chr1 36665067 36665295 -205999058 - L1MB7 LINE L1 -2140 4075 3859 2407 64 10 7 chr1 36665295 36665591 -205998762 - AluY SINE Alu -14 297 1 4933 239 58 14 chr1 36665591 36666773 -205997580 - L1MB7 LINE L1 -2356 3859 2533 2141 135 68 14 chr1 36666773 36667143 -205997210 - MLT1B LTR MaLR 0 390 1 4933 239 58 14 chr1 36667143 36667541 -205996812 - L1MB7 LINE L1 -3682 2533 2154 744 190 0 36 chr1 36667551 36667688 -205996665 - FRAM SINE Alu -6 170 39 3513 239 34 33 chr1 36667728 36667849 -205996504 - L1MEc LINE L1 -4366 2030 1911 2123 104 18 0 chr1 36667849 36668170 -205996183 - AluSq SINE Alu 0 326 1 3513 239 34 33 chr1 36668170 36669212 -205995141 - L1MEc LINE L1 -4485 1911 865 1963 168 0 13 chr1 36669219 36669522 -205994831 - AluJb SINE Alu -13 299 1 611 158 62 89 chr1 36669534 36669680 -205994673 - FLAM_C SINE Alu 0 143 2 2529 239 87 6 chr1 36669681 36670379 -205993974 - L1MEc LINE L1 -5528 868 114 717 140 18 0 chr1 36670379 36670493 -205993860 + Tigger3b DNA MER2_type 2 117 -1114 2222 185 35 78 chr1 36670493 36671070 -205993283 - MLT2B3 LTR ERVL 0 554 3 * 6278 111 24 12 chr1 36671070 36671476 -205992877 + Tigger3b DNA MER2_type 119 519 -2509 2232 116 0 0 chr1 36671476 36671808 -205992545 - AluSx SINE Alu 0 332 1 6278 111 24 12 chr1 36671808 36672428 -205991925 + Tigger3b DNA MER2_type 519 1158 -73 2048 88 0 0 chr1 36672493 36672742 -205991611 - AluSg SINE Alu -61 249 1 368 121 0 0 chr1 36673028 36673095 -205991258 - Alu SINE Alu -246 53 1 617 296 165 19 chr1 36673133 36673400 -205990953 + L2 LINE L2 2918 3223 -49 224 286 18 0 chr1 36673458 36673514 -205990839 + L2 LINE L2 3256 3312 -1 * 306 265 57 11 chr1 36673512 36673600 -205990753 + MIR SINE MIR 76 166 -55 1198 181 9 18 chr1 36673650 36673871 -205990482 - MER20 DNA MER1_type 0 219 1 509 279 91 25 chr1 36674438 36674635 -205989718 + MIR SINE MIR 53 262 0 2477 88 0 3 chr1 36674669 36674977 -205989376 - AluSp SINE Alu -6 307 1 293 229 56 108 chr1 36675020 36675213 -205989140 + MIR SINE MIR 20 212 -50 270 306 20 61 chr1 36677337 36677484 -205986869 - L2 LINE L2 -33 3239 3099 1881 174 0 0 chr1 36677506 36677787 -205986566 + AluJo SINE Alu 1 281 -31 2062 147 0 3 chr1 36677813 36678113 -205986240 + AluSx SINE Alu 7 305 -7 524 217 46 40 chr1 36678293 36678445 -205985908 + MIR3 SINE MIR 7 159 -49 1728 210 121 65 chr1 36678450 36679170 -205985183 - MER20B DNA MER1_type -3 780 21 193 245 0 0 chr1 36679171 36679220 -205985133 + MIR3 SINE MIR 154 202 -6 266 237 151 21 chr1 36679233 36679326 -205985027 - L2 LINE L2 -5 3267 3163 354 180 140 20 chr1 36679332 36679432 -205984921 - MIR3 SINE MIR -27 181 70 308 331 140 0 chr1 36680130 36680287 -205984066 + MIR3 SINE MIR 23 201 -7 325 333 25 0 chr1 36680999 36681119 -205983234 - LTR67 LTR ERVL -4 553 431 256 224 17 0 chr1 36681330 36681388 -205982965 - LTR67 LTR ERVL -385 172 114 378 294 31 55 chr1 36681898 36682061 -205982292 - MIR SINE MIR -36 226 68 451 311 62 6 chr1 36682168 36682329 -205982024 + MIR SINE MIR 13 182 -80 2863 177 39 7 chr1 36682600 36682825 -205981528 - LTR64 LTR ERVK 0 558 342 2313 72 10 7 chr1 36682825 36683118 -205981235 + AluSp SINE Alu 3 296 -17 2863 177 39 7 chr1 36683118 36683433 -205980920 - LTR64 LTR ERVK -216 342 1 251 301 63 28 chr1 36684306 36684473 -205979880 - MIR SINE MIR -70 192 5 312 281 22 82 chr1 36684659 36684794 -205979559 + MIR3 SINE MIR 82 208 0 783 77 10 0 chr1 36685398 36685502 -205978851 - L1PA10 LINE L1 -3 6165 6061 398 250 213 0 chr1 36685743 36685879 -205978474 - MIR3 SINE MIR -13 195 31 253 236 181 24 chr1 36686165 36686292 -205978061 - MIR3 SINE MIR -41 167 21 282 293 47 47 chr1 36686954 36687104 -205977249 + MIR3 SINE MIR 30 179 -29 186 227 98 98 chr1 36687662 36687794 -205976559 + L2 LINE L2 2932 3063 -209 312 365 19 0 chr1 36688312 36688468 -205975885 + L2 LINE L2 2226 2384 -930 468 328 79 33 chr1 36688468 36688937 -205975416 + L2 LINE L2 2685 3270 -2 505 263 36 7 chr1 36689207 36689344 -205975009 + MIR SINE MIR 24 164 -98 2497 96 0 0 chr1 36689376 36689688 -205974665 - AluSq SINE Alu -1 312 1 200 298 21 0 chr1 36689715 36689762 -205974591 - L2 LINE L2 -20 3252 3205 192 293 17 17 chr1 36690571 36690629 -205973724 - MIR SINE MIR -108 100 43 348 263 74 11 chr1 36690818 36690913 -205973440 - MIR SINE MIR -62 146 46 231 36 0 0 chr1 36690933 36690961 -205973392 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr1 36691117 36691144 -205973209 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1667 169 0 41 chr1 36691144 36691439 -205972914 - AluJo SINE Alu -27 285 3 223 261 22 43 chr1 36692043 36692135 -205972218 + L2 LINE L2 2490 2579 -735 3430 121 33 23 chr1 36692238 36692760 -205971593 + MER1A DNA MER1_type 1 527 0 845 264 25 17 chr1 36692806 36693041 -205971312 - MIR SINE MIR -8 254 18 1059 171 26 18 chr1 36693091 36693319 -205971034 + MER96B DNA MER1_type? 133 362 -55 847 292 92 15 chr1 36693325 36693726 -205970627 + L2 LINE L2 2835 3266 -47 197 246 88 0 chr1 36694081 36694138 -205970215 - MIR3 SINE MIR -19 189 128 779 243 159 17 chr1 36694216 36694517 -205969836 - L2 LINE L2 -2 3311 2968 434 216 22 86 chr1 36694551 36694690 -205969663 + MLT1J LTR MaLR 262 391 -120 559 234 7 22 chr1 36694761 36694898 -205969455 + MER63A DNA MER1_type 72 206 -4 384 304 136 59 chr1 36695567 36696008 -205968345 + L2 LINE L2 2373 2847 -467 924 191 106 0 chr1 36696018 36696206 -205968147 - MER3 DNA MER1_type -1 208 1 201 250 0 0 chr1 36696247 36696291 -205968062 + L2 LINE L2 2998 3041 -231 1929 123 31 24 chr1 36696391 36696684 -205967669 + AluSx SINE Alu 1 295 -17 304 172 0 0 chr1 36696701 36696759 -205967594 + Alu SINE Alu 245 302 0 253 191 24 0 chr1 36696759 36696801 -205967552 + L2 LINE L2 3141 3183 -89 630 203 76 66 chr1 36697087 36697284 -205967069 + MIR SINE MIR 44 242 -20 349 307 22 0 chr1 36697383 36697520 -205966833 - MIR3 SINE MIR -15 193 54 673 257 59 21 chr1 36697664 36697851 -205966502 - MIR SINE MIR -56 206 13 195 296 19 0 chr1 36697878 36697932 -205966421 - L2 LINE L2 -8 3305 3251 319 235 80 123 chr1 36698085 36698125 -205966228 + MIR SINE MIR 108 148 -114 2233 128 0 0 chr1 36698125 36698430 -205965923 - AluSx SINE Alu -7 305 1 319 235 80 123 chr1 36698430 36698551 -205965802 + MIR SINE MIR 148 262 0 206 333 25 25 chr1 36699263 36699344 -205965009 + MIR SINE MIR 164 244 -18 315 213 0 0 chr1 36699736 36699811 -205964542 + (TG)n Simple_repeat Simple_repeat 1 75 0 201 311 0 49 chr1 36699956 36700017 -205964336 + MIR SINE MIR 40 97 -165 1704 151 12 72 chr1 36700021 36700353 -205964000 - AluJo SINE Alu 0 312 1 389 178 33 0 chr1 36700368 36700458 -205963895 - L1MB4 LINE L1 -2 6178 6086 1945 172 0 19 chr1 36700518 36700832 -205963521 - AluJb SINE Alu -4 308 1 413 215 51 0 chr1 36700840 36700919 -205963434 + MIR SINE MIR 110 192 -70 243 305 0 0 chr1 36701234 36701329 -205963024 - L1MC4 LINE L1 -1334 6708 6614 243 234 0 43 chr1 36701297 36701391 -205962962 - L1MC4 LINE L1 -1339 6703 6614 1957 106 31 38 chr1 36701396 36701688 -205962665 - AluSx SINE Alu -22 290 1 285 200 0 33 chr1 36701856 36701916 -205962437 + MIR3 SINE MIR 122 179 -29 585 286 71 34 chr1 36701934 36702172 -205962181 + MIR SINE MIR 1 247 -15 822 257 52 5 chr1 36703069 36703279 -205961074 + MIR SINE MIR 37 256 -6 543 221 0 0 chr1 36703372 36703499 -205960854 + (CA)n Simple_repeat Simple_repeat 2 128 0 386 287 66 30 chr1 36703637 36703804 -205960549 - MIR SINE MIR -10 252 80 302 291 0 0 chr1 36703853 36703932 -205960421 - L2 LINE L2 -209 3063 2985 1060 185 25 30 chr1 36703938 36704138 -205960215 + MER20 DNA MER1_type 7 205 -14 564 302 167 0 chr1 36704154 36704369 -205959984 - MIR SINE MIR -4 258 8 238 248 137 46 chr1 36704424 36704577 -205959776 + MIR3 SINE MIR 35 201 -7 501 256 43 37 chr1 36705328 36705492 -205958861 + MIR3 SINE MIR 21 185 -23 430 260 40 0 chr1 36705779 36705879 -205958474 - L3 LINE CR1 -71 1506 1403 266 309 36 18 chr1 36705959 36706069 -205958284 - L2 LINE L2 -1 3271 3160 487 276 0 32 chr1 36706142 36706298 -205958055 + MER103 DNA DNA 3 153 -13 216 0 0 0 chr1 36706334 36706358 -205957995 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 239 267 67 0 chr1 36706364 36706439 -205957914 - L2 LINE L2 -214 3058 2979 283 206 22 98 chr1 36707163 36707347 -205957006 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 279 0 0 0 chr1 36708949 36708980 -205955373 + (TG)n Simple_repeat Simple_repeat 2 32 0 233 313 0 23 chr1 36709046 36709177 -205955176 - L2 LINE L2 -290 2982 2855 376 275 44 50 chr1 36709752 36709912 -205954441 + MLT1L LTR MaLR 15 173 -442 341 230 14 0 chr1 36709905 36709979 -205954374 + MLT1L LTR MaLR 124 198 -417 * 260 235 281 50 chr1 36710070 36710308 -205954045 + MLT1L LTR MaLR 296 615 0 213 282 200 9 chr1 36710426 36710536 -205953817 - L2 LINE L2 -1 3271 3141 310 297 30 10 chr1 36710572 36710673 -205953680 - MIR SINE MIR -48 214 112 486 308 206 22 chr1 36710682 36711097 -205953256 + MLT1J2 LTR MaLR 1 428 -22 2087 126 0 0 chr1 36711126 36711428 -205952925 - AluSx SINE Alu -10 302 1 2179 108 0 0 chr1 36711572 36711869 -205952484 - AluSx SINE Alu -15 297 1 2890 196 14 36 chr1 36712366 36712872 -205951481 - MER82 DNA MER2_type -1 652 158 1908 117 7 3 chr1 36712872 36713174 -205951179 + AluSq SINE Alu 1 303 0 2890 196 14 36 chr1 36713174 36713253 -205951100 - MER82 DNA MER2_type -495 158 79 488 249 50 50 chr1 36713397 36713578 -205950775 - MIR SINE MIR -17 245 65 206 337 46 29 chr1 36713728 36713903 -205950450 + L2 LINE L2 1314 1491 -1823 188 348 99 34 chr1 36713967 36714260 -205950093 + L2 LINE L2 1487 1798 -1516 1259 236 103 51 chr1 36714888 36715355 -205948998 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36715452 36715510 -205948843 + GA-rich Low_complexity Low_complexity 3 61 0 847 307 30 23 chr1 36715612 36715915 -205948438 - ERVL LTR ERVL -711 5053 4749 2066 93 11 0 chr1 36715959 36716262 -205948091 + AluSg SINE Alu 1 306 0 191 151 0 151 chr1 36716369 36716422 -205947931 - L2 LINE L2 -2099 1215 1171 2223 314 45 19 chr1 36716551 36717512 -205946841 - ERVL LTR ERVL -1322 4332 3347 333 247 12 12 chr1 36717544 36717625 -205946728 + LTR50 LTR ERVL 3 83 -712 282 56 0 0 chr1 36717641 36717677 -205946676 + (TA)n Simple_repeat Simple_repeat 2 37 0 239 87 0 0 chr1 36717677 36717723 -205946630 - LTR66 LTR ERVL -171 439 394 1153 349 14 6 chr1 36717775 36718532 -205945821 - ERVL LTR ERVL -3420 1576 1251 1192 225 176 5 chr1 36718666 36719264 -205945089 + LTR50 LTR ERVL 3 787 -8 563 311 37 86 chr1 36719286 36719487 -205944866 - ERVL LTR ERVL -3957 1039 869 2016 122 14 0 chr1 36719487 36719782 -205944571 - AluSx SINE Alu 0 312 14 563 311 37 86 chr1 36719782 36720011 -205944342 - ERVL LTR ERVL -4127 869 630 402 296 85 40 chr1 36720497 36720696 -205943657 - LTR16C LTR ERVL -96 395 188 272 256 146 0 chr1 36720821 36720903 -205943450 + L1MD2 LINE L1 6256 6349 -10 261 203 0 16 chr1 36720932 36720970 -205943383 + (TA)n Simple_repeat Simple_repeat 2 40 -24 252 0 0 0 chr1 36720970 36720998 -205943355 + (CA)n Simple_repeat Simple_repeat 1 28 0 261 203 0 16 chr1 36720998 36721023 -205943330 + (TA)n Simple_repeat Simple_repeat 40 64 0 371 363 74 28 chr1 36721298 36721513 -205942840 + L1MEd LINE L1 535 759 -5360 435 324 101 52 chr1 36721538 36721943 -205942410 - LTR16A LTR ERVL -8 442 18 410 222 135 52 chr1 36721983 36722213 -205942140 + L1MEd LINE L1 817 1065 -5054 492 234 89 132 chr1 36722218 36722242 -205942111 + MIR SINE MIR 1 24 -238 1852 139 17 7 chr1 36722242 36722543 -205941810 + AluJb SINE Alu 1 304 -8 492 234 89 132 chr1 36722543 36722775 -205941578 + MIR SINE MIR 24 246 -16 406 287 45 25 chr1 36722777 36722979 -205941374 + L1MEd LINE L1 1052 1257 -4862 250 264 189 40 chr1 36723358 36723559 -205940794 - L2 LINE L2 -144 3128 2898 239 0 0 31 chr1 36723826 36723858 -205940495 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1888 93 14 18 chr1 36723860 36724139 -205940214 - AluSx SINE Alu -32 280 3 243 295 289 18 chr1 36724483 36724649 -205939704 - L3 LINE CR1 -108 1469 1259 585 232 40 28 chr1 36724763 36724940 -205939413 + MIR SINE MIR 41 219 -43 199 314 0 0 chr1 36724932 36724983 -205939370 - MIR SINE MIR 0 262 212 * 212 345 152 0 chr1 36725077 36725222 -205939131 + MIR SINE MIR 48 214 -48 487 290 122 51 chr1 36726369 36726684 -205937669 - L2 LINE L2 -1 3271 2927 874 205 102 19 chr1 36726684 36726889 -205937464 + MER58A DNA MER1_type 2 223 -1 487 290 122 51 chr1 36726889 36726925 -205937428 - L2 LINE L2 -345 2927 2895 280 194 0 69 chr1 36727334 36727406 -205936947 - MER33 DNA MER1_type 0 324 258 823 192 19 83 chr1 36727472 36727738 -205936615 - MER33 DNA MER1_type -75 249 1 348 252 151 17 chr1 36727790 36727909 -205936444 + L2 LINE L2 3176 3310 -3 201 364 64 21 chr1 36728148 36728384 -205935969 + L2 LINE L2 2414 2659 -655 1896 218 58 73 chr1 36728393 36728943 -205935410 - MLT1F1 LTR MaLR 0 567 1 2087 114 3 0 chr1 36728988 36729286 -205935067 + AluSq SINE Alu 1 299 -14 3074 150 24 19 chr1 36729386 36729958 -205934395 - LTR51 LTR ERV1 0 671 2 198 297 0 99 chr1 36730052 36730143 -205934210 + L2 LINE L2 2933 3014 -258 264 229 14 43 chr1 36730263 36730333 -205934020 + L2 LINE L2 2304 2371 -943 229 292 100 39 chr1 36730553 36730683 -205933670 + MIR3 SINE MIR 3 140 -68 756 221 66 74 chr1 36730687 36730755 -205933598 - MIR SINE MIR -3 259 192 1582 161 0 42 chr1 36730755 36731065 -205933288 - AluJb SINE Alu -15 297 1 756 221 66 74 chr1 36731065 36731240 -205933113 - MIR SINE MIR -70 192 18 180 233 164 14 chr1 36731257 36731330 -205933023 + MIR SINE MIR 176 259 -3 1010 161 21 5 chr1 36732197 36732383 -205931970 + MER53 DNA DNA 1 189 0 262 349 75 9 chr1 36732638 36732744 -205931609 - L2 LINE L2 -5 3267 3155 723 225 163 52 chr1 36732920 36733132 -205931221 - L2 LINE L2 0 3313 3055 840 156 0 15 chr1 36733132 36733267 -205931086 - FLAM_C SINE Alu 0 133 1 723 225 163 52 chr1 36733267 36733361 -205930992 - L2 LINE L2 -258 3055 2973 252 0 0 0 chr1 36733385 36733413 -205930940 + (GGAAA)n Simple_repeat Simple_repeat 5 32 0 279 282 251 23 chr1 36733549 36733827 -205930526 - L2 LINE L2 -240 3073 2720 4075 70 0 2 chr1 36734100 36734625 -205929728 + L1PA5 LINE L1 5629 6152 -2 8694 152 53 28 chr1 36734715 36735447 -205928906 - L1 LINE L1 -1137 5009 4296 2029 129 7 0 chr1 36735447 36735757 -205928596 - AluSx SINE Alu 0 312 1 8694 152 53 28 chr1 36735757 36735771 -205928582 - L1 LINE L1 -1850 4296 4284 1840 143 11 0 chr1 36735771 36736051 -205928302 - AluSx SINE Alu -29 283 1 8694 152 53 28 chr1 36736051 36737029 -205927324 - L1 LINE L1 -1862 4284 3242 2019 131 64 22 chr1 36737312 36737672 -205926681 + THE1C LTR MaLR 1 375 0 1287 181 68 19 chr1 36738069 36738335 -205926018 + AluJb SINE Alu 1 279 -33 204 40 0 0 chr1 36738338 36738363 -205925990 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 372 232 84 70 chr1 36738375 36738517 -205925836 + L1ME4a LINE L1 5967 6110 -11 2151 111 0 0 chr1 36738873 36739170 -205925183 + AluSx SINE Alu 1 297 -15 218 291 173 27 chr1 36739171 36739281 -205925072 - L2 LINE L2 -4 3268 3143 1939 267 75 35 chr1 36739299 36740475 -205923878 - L2 LINE L2 -4 3309 2090 2008 111 7 3 chr1 36740745 36741033 -205923320 + AluSg SINE Alu 1 289 -21 2301 99 3 0 chr1 36741046 36741358 -205922995 + AluSp SINE Alu 1 313 0 1434 123 14 9 chr1 36741363 36741583 -205922770 + AluSg/x SINE Alu 85 305 -7 541 238 19 81 chr1 36741953 36742113 -205922240 - MIR3 SINE MIR -52 156 7 1254 164 51 19 chr1 36742433 36742689 -205921664 + AluSq SINE Alu 1 264 -49 930 67 42 0 chr1 36792689 36792966 -205871387 + L1PA11 LINE L1 6042 6323 0 226 330 64 0 chr1 36793093 36793202 -205871151 - L2 LINE L2 -335 2978 2863 744 292 116 26 chr1 36793327 36793860 -205870493 + L2 LINE L2 2446 3059 -213 760 239 46 87 chr1 36793974 36794128 -205870225 + MLT1I LTR MaLR 63 222 -187 2099 82 10 10 chr1 36794128 36794452 -205869901 + AluSp SINE Alu 1 313 0 760 239 46 87 chr1 36794452 36794663 -205869690 + MLT1I LTR MaLR 222 391 -18 290 271 65 28 chr1 36794673 36794780 -205869573 + L2 LINE L2 3202 3312 -1 429 269 44 94 chr1 36795041 36795338 -205869015 - L2 LINE L2 -159 3113 2832 495 219 33 66 chr1 36795403 36795554 -205868799 - L2 LINE L2 -210 3062 2917 186 103 0 0 chr1 36795776 36795805 -205868548 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2765 172 93 38 chr1 36795944 36796187 -205868166 - L1MC3 LINE L1 -8 7777 7549 1998 107 21 0 chr1 36796187 36796476 -205867877 - AluSq SINE Alu -18 295 1 2765 172 93 38 chr1 36796476 36796896 -205867457 - L1MC3 LINE L1 -236 7549 7077 289 190 63 0 chr1 36797518 36797597 -205866756 - L1MA7 LINE L1 -1 6290 6207 192 343 221 15 chr1 36797619 36798080 -205866273 + L2 LINE L2 1939 2494 -820 665 160 0 0 chr1 36798162 36798268 -205866085 + FLAM_C SINE Alu 2 107 -36 255 61 0 0 chr1 36798452 36798485 -205865868 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2023 112 3 3 chr1 36798526 36798820 -205865533 - AluSq SINE Alu -15 298 5 1337 241 82 66 chr1 36799203 36799780 -205864573 - MER97a DNA MER1_type? -307 587 2 826 227 106 5 chr1 36799783 36799990 -205864363 - L1MC4a LINE L1 -454 7354 7127 * 1132 160 55 5 chr1 36799980 36800199 -205864154 - L1MC4 LINE L1 -871 7171 6942 213 39 0 0 chr1 36800327 36800353 -205864000 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 248 257 229 12 chr1 36800419 36800569 -205863784 + MIR SINE MIR 11 192 -70 311 291 150 56 chr1 36801019 36801406 -205862947 + L2 LINE L2 2787 3208 -105 314 158 18 35 chr1 36801901 36801958 -205862395 + MER117 DNA MER1_type 95 150 -47 303 236 9 0 chr1 36802176 36802248 -205862105 + MIR SINE MIR 85 145 -63 196 286 0 18 chr1 36802405 36802461 -205861892 - L2 LINE L2 -13 3259 3205 186 319 0 0 chr1 36802485 36802532 -205861821 + L2 LINE L2 3210 3256 -16 291 287 37 61 chr1 36803023 36803190 -205861163 + MIR SINE MIR 45 205 -57 228 293 0 0 chr1 36803523 36803581 -205860772 - MLT1K LTR MaLR -340 248 191 718 232 137 82 chr1 36804369 36804585 -205859768 - MLT1D LTR MaLR 0 505 302 180 111 0 0 chr1 36804585 36804612 -205859741 + (TC)n Simple_repeat Simple_repeat 2 28 0 1945 164 0 7 chr1 36804613 36804900 -205859453 - AluJo SINE Alu -27 285 1 718 232 137 82 chr1 36804900 36805119 -205859234 - MLT1D LTR MaLR -202 303 6 194 163 113 88 chr1 36805276 36805356 -205858997 + MIR SINE MIR 110 191 -71 456 323 53 5 chr1 36805711 36805900 -205858453 - MIR SINE MIR -2 260 63 473 188 42 0 chr1 36806065 36806161 -205858192 + L2 LINE L2 3214 3313 0 342 261 152 36 chr1 36806589 36806643 -205857710 - L1ME4a LINE L1 -1 6120 6074 2363 73 3 52 chr1 36806643 36806970 -205857383 + AluY SINE Alu 1 311 0 342 261 152 36 chr1 36806970 36807053 -205857300 - L1ME4a LINE L1 -47 6074 5967 1876 105 0 95 chr1 36807069 36807384 -205856969 + AluSx SINE Alu 1 285 -27 503 0 32 0 chr1 36807384 36807446 -205856907 + (CATAA)n Simple_repeat Simple_repeat 2 65 0 394 213 170 7 chr1 36807725 36807866 -205856487 + MLT1J2 LTR MaLR 265 428 -22 2244 126 0 0 chr1 36807895 36808197 -205856156 - AluSx SINE Alu -10 302 1 2348 104 0 0 chr1 36808341 36808638 -205855715 - AluSx SINE Alu -15 297 1 2624 188 8 16 chr1 36809134 36809640 -205854713 - MER82 DNA MER2_type -1 652 151 2381 95 3 3 chr1 36809640 36809946 -205854407 + AluSx SINE Alu 1 306 -6 1180 240 103 51 chr1 36809999 36810466 -205853887 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36810563 36810621 -205853732 + GA-rich Low_complexity Low_complexity 3 61 0 838 312 30 24 chr1 36810723 36811053 -205853300 - ERVL LTR ERVL -711 5053 4722 2426 97 0 0 chr1 36811070 36811370 -205852983 + AluY SINE Alu 1 300 -11 1406 122 11 0 chr1 36811380 36811569 -205852784 + AluSp SINE Alu 1 191 -122 497 31 0 0 chr1 36811669 36811734 -205852619 + L1PA5 LINE L1 6087 6151 -3 2268 118 0 13 chr1 36812063 36812241 -205852112 - AluSg SINE Alu -1 309 135 2058 131 13 3 chr1 36812241 36812539 -205851814 - AluSg SINE Alu -9 301 1 2268 118 0 13 chr1 36812539 36812673 -205851680 - AluSg SINE Alu -175 135 1 372 257 20 0 chr1 36812673 36812774 -205851579 - MIR SINE MIR -57 205 103 971 242 188 34 chr1 36812807 36813319 -205851034 - L2 LINE L2 0 3313 2741 923 154 150 59 chr1 36814490 36814656 -205849697 + L1MB7 LINE L1 5925 6117 -67 2209 95 6 50 chr1 36814656 36814973 -205849380 - AluSx SINE Alu -7 305 3 923 154 150 59 chr1 36814973 36815026 -205849327 + L1MB7 LINE L1 6117 6164 -20 613 291 62 26 chr1 36816409 36816636 -205847717 - MIR SINE MIR -6 256 22 206 276 40 0 chr1 36816862 36816938 -205847415 + L2 LINE L2 2635 2713 -601 195 250 104 0 chr1 36817270 36817318 -205847035 + MIR SINE MIR 65 117 -145 226 353 0 49 chr1 36817417 36817519 -205846834 - MIR SINE MIR -57 205 109 347 287 143 26 chr1 36817532 36817762 -205846591 + L2 LINE L2 2601 2857 -457 325 293 9 9 chr1 36818519 36818625 -205845728 + MIR SINE MIR 30 135 -127 1054 163 45 24 chr1 36818625 36818871 -205845482 - L1 LINE L1 -2654 3492 3242 1906 131 64 22 chr1 36819154 36819514 -205844839 + THE1C LTR MaLR 1 375 0 1425 181 68 19 chr1 36819911 36820177 -205844176 + AluJb SINE Alu 1 279 -33 204 40 0 0 chr1 36820180 36820205 -205844148 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 360 237 79 79 chr1 36820217 36820369 -205843984 + L1ME4a LINE L1 5967 6118 -3 2322 108 0 0 chr1 36820717 36821014 -205843339 + AluSx SINE Alu 1 297 -15 190 291 173 27 chr1 36821015 36821125 -205843228 - L2 LINE L2 -4 3268 3143 2161 277 104 18 chr1 36821143 36822569 -205841784 - L2 LINE L2 -4 3309 1756 1006 261 38 10 chr1 36822611 36822902 -205841451 + L1ME LINE L1 5369 5667 -497 2000 93 4 0 chr1 36823003 36823250 -205841103 - AluSx SINE Alu -64 248 1 495 254 35 30 chr1 36823424 36823593 -205840760 + MIR SINE MIR 2 171 -91 3812 247 125 37 chr1 36823724 36825523 -205838830 + L2 LINE L2 1275 3270 -43 344 291 0 71 chr1 36825575 36825627 -205838726 + MIR SINE MIR 117 171 -91 2489 98 0 0 chr1 36825627 36825933 -205838420 - AluSg SINE Alu -4 306 1 344 291 0 71 chr1 36825933 36826021 -205838332 + MIR SINE MIR 171 247 -15 407 314 43 0 chr1 36826411 36826551 -205837802 + MIR SINE MIR 105 250 -12 369 270 60 76 chr1 36826616 36826708 -205837645 + MIR SINE MIR 32 121 -141 2573 80 0 13 chr1 36826708 36827022 -205837331 - AluSq SINE Alu -2 311 2 369 270 60 76 chr1 36827022 36827114 -205837239 + MIR SINE MIR 121 213 -49 27 29 0 0 chr1 36827142 36827176 -205837177 + AT_rich Low_complexity Low_complexity 1 34 0 188 139 0 93 chr1 36827421 36827464 -205836889 + L2 LINE L2 3233 3271 -1 246 365 91 15 chr1 36828008 36828205 -205836148 - L2 LINE L2 -683 2631 2420 2295 115 0 6 chr1 36828269 36828583 -205835770 - AluSq SINE Alu -1 312 1 412 309 71 0 chr1 36828844 36829012 -205835341 + MIR SINE MIR 13 192 -70 189 291 111 0 chr1 36829090 36829207 -205835146 - L2 LINE L2 -223 3049 2920 293 365 19 0 chr1 36829841 36829997 -205834356 + L2 LINE L2 2226 2384 -930 416 351 68 23 chr1 36829997 36830466 -205833887 + L2 LINE L2 2685 3270 -2 475 263 36 7 chr1 36830736 36830873 -205833480 + MIR SINE MIR 24 164 -98 2519 93 0 0 chr1 36830905 36831217 -205833136 - AluSq SINE Alu -1 312 1 195 277 21 0 chr1 36831244 36831291 -205833062 - L2 LINE L2 -20 3252 3205 193 295 16 16 chr1 36832096 36832157 -205832196 - MIR SINE MIR -105 103 43 351 253 74 11 chr1 36832346 36832441 -205831912 - MIR SINE MIR -62 146 46 231 36 0 0 chr1 36832461 36832489 -205831864 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr1 36832645 36832672 -205831681 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1674 169 0 41 chr1 36832672 36832967 -205831386 - AluJo SINE Alu -27 285 3 208 261 22 43 chr1 36833571 36833663 -205830690 + L2 LINE L2 2490 2579 -735 3257 117 33 23 chr1 36833766 36834288 -205830065 + MER1A DNA MER1_type 1 527 0 797 264 25 17 chr1 36834334 36834569 -205829784 - MIR SINE MIR -8 254 18 1111 158 26 18 chr1 36834619 36834847 -205829506 + MER96B DNA MER1_type? 133 362 -55 770 292 84 15 chr1 36834853 36835244 -205829109 + L2 LINE L2 2835 3252 -61 185 246 88 0 chr1 36835609 36835666 -205828687 - MIR3 SINE MIR -19 189 128 794 222 169 30 chr1 36835744 36836046 -205828307 - L2 LINE L2 -2 3311 2968 457 216 22 86 chr1 36836079 36836218 -205828135 + MLT1J LTR MaLR 262 391 -120 569 241 7 22 chr1 36836289 36836426 -205827927 + MER63A DNA MER1_type 72 206 -4 316 304 136 59 chr1 36837095 36837536 -205826817 + L2 LINE L2 2373 2847 -467 871 191 106 0 chr1 36837546 36837734 -205826619 - MER3 DNA MER1_type -1 208 1 192 250 0 0 chr1 36837775 36837819 -205826534 + L2 LINE L2 2998 3041 -231 1936 123 31 24 chr1 36837919 36838212 -205826141 + AluSx SINE Alu 1 295 -17 311 172 0 0 chr1 36838229 36838287 -205826066 + Alu SINE Alu 245 302 0 245 167 24 0 chr1 36838287 36838329 -205826024 + L2 LINE L2 3141 3183 -89 586 228 66 56 chr1 36838615 36838812 -205825541 + MIR SINE MIR 44 242 -20 328 307 22 0 chr1 36838911 36839048 -205825305 - MIR3 SINE MIR -15 193 54 635 257 59 21 chr1 36839192 36839379 -205824974 - MIR SINE MIR -56 206 13 188 310 17 0 chr1 36839402 36839460 -205824893 - L2 LINE L2 -4 3309 3251 300 235 80 123 chr1 36839613 36839653 -205824700 + MIR SINE MIR 108 148 -114 2252 125 0 0 chr1 36839653 36839958 -205824395 - AluSx SINE Alu -7 305 1 300 235 80 123 chr1 36839958 36840079 -205824274 + MIR SINE MIR 148 262 0 200 333 25 25 chr1 36840790 36840871 -205823482 + MIR SINE MIR 164 244 -18 315 213 0 0 chr1 36841263 36841338 -205823015 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 311 0 49 chr1 36841483 36841544 -205822809 + MIR SINE MIR 40 97 -165 1701 151 12 72 chr1 36841548 36841880 -205822473 - AluJo SINE Alu 0 312 1 372 178 33 0 chr1 36841895 36841985 -205822368 - L1MB4 LINE L1 -2 6178 6086 2016 162 0 19 chr1 36842045 36842359 -205821994 - AluJb SINE Alu -4 308 1 392 215 51 0 chr1 36842367 36842446 -205821907 + MIR SINE MIR 110 192 -70 231 246 0 0 chr1 36842761 36842818 -205821535 - L1MC4 LINE L1 -1334 6708 6652 236 234 0 43 chr1 36842824 36842918 -205821435 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr1 36842918 36842941 -205821412 + (TATATG)n Simple_repeat Simple_repeat 5 27 0 1962 106 31 38 chr1 36842941 36843233 -205821120 - AluSx SINE Alu -22 290 1 270 200 0 33 chr1 36843401 36843461 -205820892 + MIR3 SINE MIR 122 179 -29 569 277 71 34 chr1 36843479 36843717 -205820636 + MIR SINE MIR 1 247 -15 801 252 52 5 chr1 36844613 36844823 -205819530 + MIR SINE MIR 37 256 -6 543 221 0 0 chr1 36844916 36845043 -205819310 + (CA)n Simple_repeat Simple_repeat 2 128 0 370 287 66 30 chr1 36845181 36845348 -205819005 - MIR SINE MIR -10 252 80 284 291 0 0 chr1 36845397 36845476 -205818877 - L2 LINE L2 -209 3063 2985 1017 185 25 30 chr1 36845482 36845682 -205818671 + MER20 DNA MER1_type 7 205 -14 520 302 167 0 chr1 36845698 36845913 -205818440 - MIR SINE MIR -4 258 8 220 248 137 46 chr1 36845968 36846121 -205818232 + MIR3 SINE MIR 35 201 -7 481 256 43 37 chr1 36846872 36847036 -205817317 + MIR3 SINE MIR 21 185 -23 397 221 13 0 chr1 36847346 36847423 -205816930 - L3 LINE CR1 -97 1480 1403 235 364 18 0 chr1 36847503 36847613 -205816740 - L2 LINE L2 -1 3271 3160 477 276 0 32 chr1 36847686 36847842 -205816511 + MER103 DNA DNA 3 153 -13 216 0 0 0 chr1 36847878 36847902 -205816451 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 247 240 67 0 chr1 36847908 36847983 -205816370 - L2 LINE L2 -214 3058 2979 294 206 22 98 chr1 36848707 36848891 -205815462 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 279 0 0 0 chr1 36850485 36850516 -205813837 + (TG)n Simple_repeat Simple_repeat 2 32 0 220 313 0 23 chr1 36850582 36850713 -205813640 - L2 LINE L2 -290 2982 2855 404 305 35 40 chr1 36851273 36851447 -205812906 + MLT1L LTR MaLR 1 173 -442 328 243 14 0 chr1 36851440 36851514 -205812839 + MLT1L LTR MaLR 124 198 -417 * 226 237 197 26 chr1 36851631 36851707 -205812646 + MLT1K LTR MaLR 328 416 -172 255 260 60 30 chr1 36851743 36851843 -205812510 + MLT1L LTR MaLR 513 615 0 186 273 182 16 chr1 36851961 36852082 -205812271 - L2 LINE L2 -1 3312 3172 290 297 30 10 chr1 36852107 36852208 -205812145 - MIR SINE MIR -48 214 112 467 317 164 26 chr1 36852217 36852639 -205811714 + MLT1J2 LTR MaLR 1 495 -16 2244 126 0 0 chr1 36852661 36852963 -205811390 - AluSx SINE Alu -10 302 1 2348 104 0 0 chr1 36853107 36853404 -205810949 - AluSx SINE Alu -15 297 1 2788 198 12 34 chr1 36853901 36854407 -205809946 - MER82 DNA MER2_type -1 652 158 2058 117 7 3 chr1 36854407 36854689 -205809664 + AluSq SINE Alu 1 303 0 181 0 0 0 chr1 36854689 36854709 -205809644 + (TAAA)n Simple_repeat Simple_repeat 1 156 0 2788 198 12 34 chr1 36854709 36854788 -205809565 - MER82 DNA MER2_type -495 158 79 466 243 50 50 chr1 36854932 36855113 -205809240 - MIR SINE MIR -17 245 65 205 337 46 29 chr1 36855263 36855438 -205808915 + L2 LINE L2 1314 1491 -1823 329 312 127 41 chr1 36855801 36856093 -205808260 + L1M2 LINE L1 793 1109 -5740 1404 238 103 51 chr1 36856422 36856889 -205807464 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36856986 36857044 -205807309 + GA-rich Low_complexity Low_complexity 3 61 0 842 307 30 23 chr1 36857146 36857449 -205806904 - ERVL LTR ERVL -711 5053 4749 2173 93 11 0 chr1 36857493 36857796 -205806557 + AluSg SINE Alu 1 306 0 188 151 0 151 chr1 36857903 36857956 -205806397 - L2 LINE L2 -2099 1215 1171 2274 308 44 18 chr1 36858098 36859045 -205805308 - ERVL LTR ERVL -1336 4318 3347 319 228 13 13 chr1 36859077 36859156 -205805197 + LTR50 LTR ERVL 3 81 -714 432 55 0 0 chr1 36859174 36859229 -205805124 + (TA)n Simple_repeat Simple_repeat 1 55 0 226 200 71 0 chr1 36859229 36859299 -205805054 - L1MCa LINE L1 -4362 2064 1990 1171 347 14 6 chr1 36859317 36860074 -205804279 - ERVL LTR ERVL -3420 1576 1251 1157 224 174 3 chr1 36860208 36860806 -205803547 + LTR50 LTR ERVL 3 787 -8 2121 122 14 0 chr1 36861035 36861330 -205803023 - AluSx SINE Alu 0 312 14 377 298 28 79 chr1 36861344 36861559 -205802794 - ERVL LTR ERVL -4163 833 630 421 291 85 40 chr1 36862045 36862244 -205802109 - LTR16C LTR ERVL -96 395 188 301 244 146 0 chr1 36862369 36862451 -205801902 + L1MD2 LINE L1 6256 6349 -10 234 0 0 0 chr1 36862518 36862544 -205801809 + (CA)n Simple_repeat Simple_repeat 1 26 0 207 100 0 0 chr1 36862543 36862573 -205801780 + (TA)n Simple_repeat Simple_repeat 2 31 0 * 342 366 69 28 chr1 36862847 36863063 -205801290 + L1MEd LINE L1 535 759 -5360 442 321 101 52 chr1 36863088 36863493 -205800860 - LTR16A LTR ERVL -8 442 18 442 222 135 52 chr1 36863533 36863763 -205800590 + L1MEd LINE L1 817 1065 -5054 493 234 89 132 chr1 36863768 36863792 -205800561 + MIR SINE MIR 1 24 -238 1976 137 17 7 chr1 36863792 36864092 -205800261 + AluJb SINE Alu 1 303 -9 493 234 89 132 chr1 36864092 36864324 -205800029 + MIR SINE MIR 24 246 -16 471 304 82 16 chr1 36864326 36864842 -205799511 + L1MEd LINE L1 1052 1655 -857 292 227 13 40 chr1 36864862 36864937 -205799416 + L1ME1 LINE L1 44 116 -6280 7061 117 22 13 chr1 36864955 36865636 -205798717 - Tigger3b DNA MER2_type -1811 1217 520 2225 109 0 0 chr1 36865636 36865968 -205798385 + AluSx SINE Alu 1 332 0 7061 117 22 13 chr1 36865968 36866374 -205797979 - Tigger3b DNA MER2_type -2508 520 119 2362 184 35 78 chr1 36866374 36866951 -205797402 + MLT2B3 LTR ERVL 3 554 0 760 140 18 0 chr1 36866951 36867065 -205797288 - Tigger3b DNA MER2_type -1114 117 2 2728 226 90 9 chr1 36867065 36867763 -205796590 + L1ME1 LINE L1 114 868 -5528 647 158 62 89 chr1 36867764 36867910 -205796443 + FLAM_C SINE Alu 2 143 0 1917 168 0 13 chr1 36867922 36868225 -205796128 + AluJb SINE Alu 1 299 -13 5471 220 77 64 chr1 36868233 36869274 -205795079 + L1ME1 LINE L1 867 1893 -4322 2076 108 18 0 chr1 36869274 36869595 -205794758 + AluSq SINE Alu 1 326 0 5471 220 77 64 chr1 36869595 36869756 -205794597 + L1ME1 LINE L1 1893 2050 -4165 782 168 0 51 chr1 36869756 36869893 -205794460 + FRAM SINE Alu 39 168 -8 5471 220 77 64 chr1 36869893 36870301 -205794052 + L1ME1 LINE L1 2050 2451 -3764 2275 135 68 14 chr1 36870301 36870671 -205793682 + MLT1B LTR MaLR 1 390 0 5471 220 77 64 chr1 36870671 36871853 -205792500 + L1ME1 LINE L1 2451 3851 -2364 2361 64 10 7 chr1 36871853 36872148 -205792205 + AluY SINE Alu 1 296 -15 5471 220 77 64 chr1 36872148 36872376 -205791977 + L1ME1 LINE L1 3851 4075 -2140 5359 168 23 25 chr1 36872396 36874182 -205790171 - L1MA9 LINE L1 -38 6274 4480 3642 194 103 106 chr1 36874169 36874740 -205789613 + L1ME1 LINE L1 4053 4624 -1717 * 1843 172 0 3 chr1 36874740 36875037 -205789316 + AluJo SINE Alu 1 296 -16 3642 194 103 106 chr1 36875037 36875170 -205789183 + L1ME1 LINE L1 4624 4756 -1585 2140 134 0 7 chr1 36875170 36875477 -205788876 + AluSx SINE Alu 1 305 -7 3642 194 103 106 chr1 36875477 36875991 -205788362 + L1ME1 LINE L1 4756 5271 -1070 1075 220 0 0 chr1 36875991 36876164 -205788189 + FAM SINE Alu 1 173 -2 3642 194 103 106 chr1 36876164 36876491 -205787862 + L1ME1 LINE L1 5271 5598 -743 29422 64 9 5 chr1 36876502 36880475 -205783878 - L1PA6 LINE L1 -13 6141 2149 2322 101 0 0 chr1 36880475 36880771 -205783582 - AluY SINE Alu -15 296 1 29422 64 9 5 chr1 36880771 36881433 -205782920 - L1PA6 LINE L1 -4005 2149 1491 1587 203 36 43 chr1 36881436 36881474 -205782879 + L1ME1 LINE L1 5589 5626 -609 2463 147 52 7 chr1 36881474 36881882 -205782471 + MSTA LTR MaLR 1 426 -2 1587 203 36 43 chr1 36881882 36881973 -205782380 + L1ME1 LINE L1 5626 5716 -519 2660 135 45 43 chr1 36881973 36882396 -205781957 - MSTB LTR MaLR 0 426 3 1587 203 36 43 chr1 36882396 36882684 -205781669 + L1ME1 LINE L1 5716 6004 -231 764 184 116 0 chr1 36882684 36882831 -205781522 - AluSg/x SINE Alu -12 298 135 456 254 0 37 chr1 36882836 36882970 -205781383 + L1MA10 LINE L1 6206 6334 0 2271 86 0 0 chr1 36883103 36883446 -205780907 + AluSc SINE Alu 1 343 0 213 219 0 41 chr1 36883562 36883635 -205780718 + A-rich Low_complexity Low_complexity 3 72 0 6454 147 7 14 chr1 36883731 36885175 -205779178 + L1MA3 LINE L1 4838 6272 -33 27 29 0 0 chr1 36885196 36885230 -205779123 + AT_rich Low_complexity Low_complexity 1 34 0 235 372 0 0 chr1 36885752 36885830 -205778523 - L2 LINE L2 -5 3267 3190 2421 89 0 13 chr1 36885857 36886171 -205778182 + AluSg SINE Alu 1 310 0 181 289 66 90 chr1 36886180 36886391 -205777962 - L2 LINE L2 -211 3061 2856 355 241 45 18 chr1 36886794 36886906 -205777447 + MIR3 SINE MIR 6 120 -88 340 274 20 20 chr1 36887169 36887315 -205777038 - HAL1b LINE L1 -2 1346 1201 186 71 0 0 chr1 36887317 36887345 -205777008 + (CA)n Simple_repeat Simple_repeat 1 28 0 807 276 132 29 chr1 36887600 36887696 -205776657 - L1ME LINE L1 -404 5717 5632 1641 167 50 14 chr1 36887696 36887977 -205776376 + AluJb SINE Alu 1 291 -21 807 276 132 29 chr1 36887977 36888296 -205776057 - L1ME LINE L1 -489 5632 5259 480 35 0 0 chr1 36888465 36888523 -205775830 + (CA)n Simple_repeat Simple_repeat 2 59 0 408 287 67 24 chr1 36888647 36888811 -205775542 + MIR SINE MIR 20 190 -72 409 280 91 38 chr1 36889836 36890022 -205774331 - MIR SINE MIR -3 259 64 274 206 64 53 chr1 36890140 36890269 -205774084 + MIR SINE MIR 19 137 -71 480 294 49 6 chr1 36891048 36891211 -205773142 - MIR SINE MIR -33 229 60 207 254 18 0 chr1 36891476 36891531 -205772822 + GA-rich Low_complexity Low_complexity 3 58 0 277 113 245 0 chr1 36891632 36891685 -205772668 + MLT1K LTR MaLR 507 572 -16 1041 283 148 30 chr1 36891725 36892332 -205772021 + L2 LINE L2 2348 3064 -249 2273 109 70 56 chr1 36892332 36892502 -205771851 + THE1B LTR MaLR 1 167 -197 2378 104 0 0 chr1 36892502 36892810 -205771543 + AluSc SINE Alu 1 308 -1 2273 109 70 56 chr1 36892810 36892998 -205771355 + THE1B LTR MaLR 167 364 0 1041 283 148 30 chr1 36892998 36893084 -205771269 + L2 LINE L2 3064 3138 -175 2303 117 0 0 chr1 36893142 36893449 -205770904 + AluSq SINE Alu 1 307 -6 576 260 141 38 chr1 36893539 36893955 -205770398 + L1ME LINE L1 609 1073 -5046 817 239 118 44 chr1 36894128 36894564 -205769789 + L1ME LINE L1 1018 1494 -4635 839 312 27 37 chr1 36894564 36894939 -205769414 + L2 LINE L2 2834 3204 -109 27 29 0 0 chr1 36894953 36894987 -205769366 + AT_rich Low_complexity Low_complexity 1 34 0 502 244 32 0 chr1 36895173 36895296 -205769057 - MLT1L LTR MaLR 0 615 489 667 267 89 25 chr1 36895394 36895675 -205768678 - MLT1L LTR MaLR -299 316 18 209 277 188 9 chr1 36895734 36895846 -205768507 - MIR SINE MIR -68 194 63 2901 138 9 64 chr1 36895907 36896114 -205768239 + L1MB7 LINE L1 5670 5887 -297 2240 115 0 0 chr1 36896114 36896418 -205767935 + AluSx SINE Alu 1 304 -8 2901 138 9 64 chr1 36896418 36896745 -205767608 + L1MB7 LINE L1 5887 6175 -9 1933 209 136 6 chr1 36896750 36897252 -205767101 + MLT1G LTR MaLR 14 580 -10 310 296 21 37 chr1 36897607 36897796 -205766557 + L2 LINE L2 2251 2436 -878 2251 271 116 20 chr1 36897796 36898877 -205765476 + L2 LINE L2 2128 3313 0 2202 110 3 3 chr1 36898937 36899236 -205765117 - AluSg SINE Alu -11 299 1 22 0 0 0 chr1 36899399 36899421 -205764932 + AT_rich Low_complexity Low_complexity 1 22 0 346 244 79 24 chr1 36899425 36899552 -205764801 - L1ME4a LINE L1 -13 6108 5975 491 241 9 0 chr1 36899671 36899779 -205764574 + MIR SINE MIR 81 189 -73 289 303 22 0 chr1 36899829 36899918 -205764435 - MIR SINE MIR -15 247 157 623 276 81 24 chr1 36900581 36900827 -205763526 - MIR SINE MIR 0 262 3 305 326 34 39 chr1 36900884 36901062 -205763291 - MIR SINE MIR -65 197 21 334 252 168 17 chr1 36901164 36901283 -205763070 + L2 LINE L2 3175 3311 -2 797 278 72 32 chr1 36901503 36901802 -205762551 + MLT1L LTR MaLR 2 288 -327 2062 93 31 17 chr1 36901802 36902092 -205762261 - AluSx SINE Alu -18 294 1 797 278 72 32 chr1 36902092 36902349 -205762004 + MLT1L LTR MaLR 288 615 0 323 286 40 39 chr1 36902462 36902658 -205761695 - MIR SINE MIR -61 201 4 218 386 38 19 chr1 36902753 36902911 -205761442 + L2 LINE L2 2946 3106 -166 2335 101 0 0 chr1 36902938 36903235 -205761118 - AluSx SINE Alu -15 297 1 716 295 43 20 chr1 36903315 36903569 -205760784 + MIR SINE MIR 3 262 0 191 200 0 0 chr1 36903605 36903640 -205760713 + L2 LINE L2 3238 3272 0 394 240 188 6 chr1 36903716 36903880 -205760473 + MIR SINE MIR 38 244 -18 374 277 38 43 chr1 36904169 36904353 -205760000 + MIR3 SINE MIR 16 198 -10 236 348 25 9 chr1 36904884 36905040 -205759313 - MIR SINE MIR -62 146 26 1885 138 13 10 chr1 36905042 36905393 -205758960 - MER31A LTR ERV1 0 485 1 303 259 12 0 chr1 36905422 36905503 -205758850 - MLT1K LTR MaLR -2 586 505 401 297 23 40 chr1 36905535 36905710 -205758643 + MIR SINE MIR 29 200 -62 350 210 145 91 chr1 36905711 36905792 -205758561 + MER112 DNA MER1_type 21 96 -164 1492 145 86 48 chr1 36905792 36906082 -205758271 + AluJo SINE Alu 1 301 -11 222 37 0 0 chr1 36906082 36906109 -205758244 + (TA)n Simple_repeat Simple_repeat 2 28 0 350 210 145 91 chr1 36906109 36906167 -205758186 + MER112 DNA MER1_type 96 149 -111 189 74 0 0 chr1 36906167 36906194 -205758159 + (CTAGT)n Simple_repeat Simple_repeat 2 28 0 350 210 145 91 chr1 36906194 36906238 -205758115 + MER112 DNA MER1_type 149 216 -44 581 156 12 192 chr1 36906238 36906330 -205758023 + L1MA7 LINE L1 6155 6214 -86 2078 115 39 0 chr1 36906330 36906609 -205757744 + AluSx SINE Alu 1 290 -22 581 156 12 192 chr1 36906609 36906683 -205757670 + L1MA7 LINE L1 6214 6300 0 213 337 22 0 chr1 36906751 36906843 -205757510 + MIR SINE MIR 169 262 0 286 300 33 0 chr1 36907089 36907179 -205757174 - MIR SINE MIR 0 262 170 672 187 45 0 chr1 36907193 36907327 -205757026 + MLT1J2 LTR MaLR 3 142 -308 377 153 8 169 chr1 36907448 36907566 -205756787 + MER58B DNA MER1_type 231 329 -12 2066 99 3 11 chr1 36907568 36907941 -205756412 + AluSg SINE Alu 1 371 0 386 215 8 115 chr1 36907985 36908115 -205756238 - MLT1K LTR MaLR -350 238 123 1881 141 40 85 chr1 36908136 36908534 -205755819 + MLT1B LTR MaLR 1 380 -10 1978 133 23 17 chr1 36908972 36909317 -205755036 - THE1C LTR MaLR 0 375 29 252 163 0 23 chr1 36909429 36909472 -205754881 - AluJ/FLAM SINE Alu -245 57 16 264 210 230 0 chr1 36909491 36909591 -205754762 + Charlie1 DNA MER1_type 2638 2760 -1 2343 93 0 7 chr1 36909617 36909919 -205754434 - AluSx SINE Alu -12 300 1 186 377 41 41 chr1 36910087 36910233 -205754120 + L2 LINE L2 3163 3308 -5 * 795 244 12 0 chr1 36910228 36910392 -205753961 + MIR3 SINE MIR 28 193 -15 189 0 0 0 chr1 36911863 36911884 -205752469 + (A)n Simple_repeat Simple_repeat 1 21 0 2248 91 3 0 chr1 36911889 36912175 -205752178 + AluSq SINE Alu 7 293 -20 2340 100 0 3 chr1 36912176 36912477 -205751876 + AluSx SINE Alu 1 300 -12 250 216 20 0 chr1 36912477 36912528 -205751825 - MER5A DNA MER1_type -61 128 77 235 200 148 35 chr1 36912754 36912869 -205751484 + L1ME LINE L1 5617 5744 -377 1550 195 0 4 chr1 36912951 36913213 -205751140 + AluJb SINE Alu 12 272 -40 1342 204 7 29 chr1 36913225 36913336 -205751017 + AluJo SINE Alu 27 139 -173 2242 78 11 3 chr1 36913336 36913646 -205750707 + AluSp SINE Alu 2 313 0 1342 204 7 29 chr1 36913646 36913808 -205750545 + AluJo SINE Alu 139 295 -17 1620 156 35 0 chr1 36913974 36914231 -205750122 - AluJb SINE Alu -46 266 1 2269 72 0 17 chr1 36914254 36914544 -205749809 + AluY SINE Alu 3 287 -24 2473 56 0 26 chr1 36915461 36915766 -205748587 + AluY SINE Alu 1 297 -14 1167 188 4 4 chr1 36916095 36916324 -205748029 - AluJb SINE Alu 0 312 84 195 42 0 0 chr1 36916367 36916391 -205747962 + (TA)n Simple_repeat Simple_repeat 1 24 0 468 284 18 71 chr1 36916436 36916605 -205747748 - MIR3 SINE MIR -33 175 16 728 288 213 17 chr1 36917107 36917510 -205746843 - L1MC4a LINE L1 -1942 5866 5385 489 221 0 11 chr1 36918529 36918624 -205745729 - L1MC1 LINE L1 -60 6273 6180 392 227 216 11 chr1 36918626 36918802 -205745551 + MIR SINE MIR 24 235 -27 315 278 49 0 chr1 36918917 36919029 -205745324 + MIR SINE MIR 56 171 -63 2179 118 10 0 chr1 36919029 36919325 -205745028 - AluSx SINE Alu -13 299 1 225 0 0 0 chr1 36919328 36919353 -205745000 + (T)n Simple_repeat Simple_repeat 1 25 0 345 275 133 13 chr1 36919731 36919877 -205744476 + MIR SINE MIR 33 189 -62 22 80 0 13 chr1 36920203 36920265 -205744088 + AT_rich Low_complexity Low_complexity 1 63 -11 1499 194 20 3 chr1 36920265 36920558 -205743795 + AluJo SINE Alu 1 298 -14 22 80 0 13 chr1 36920558 36920570 -205743783 + AT_rich Low_complexity Low_complexity 63 74 0 289 262 60 12 chr1 36920789 36920873 -205743480 + L2 LINE L2 1875 1962 -1352 1269 188 21 106 chr1 36921840 36922170 -205742183 + AluYb8 SINE Alu 1 302 -16 184 363 30 44 chr1 36922190 36922325 -205742028 - L2 LINE L2 -1 3271 3139 319 289 258 21 chr1 36923107 36923297 -205741056 + MIR SINE MIR 2 236 -26 768 361 30 12 chr1 36924139 36924432 -205739921 - L3 LINE CR1 -1 1576 1275 2168 105 26 0 chr1 36924432 36924736 -205739617 - AluSx SINE Alu 0 312 1 768 361 30 12 chr1 36924736 36924780 -205739573 - L3 LINE CR1 -302 1275 1233 260 159 57 68 chr1 36924780 36924868 -205739485 - L1ME4a LINE L1 -62 6059 5973 765 252 148 13 chr1 36924905 36925223 -205739130 - L1ME4a LINE L1 -225 5896 5536 24 32 0 0 chr1 36925291 36925322 -205739031 + AT_rich Low_complexity Low_complexity 1 31 0 642 226 90 94 chr1 36925322 36925899 -205738454 - L1MC5 LINE L1 -292 7750 7193 1705 157 11 8 chr1 36926133 36926400 -205737953 + AluJb SINE Alu 1 268 -44 682 88 53 26 chr1 36927541 36927655 -205736698 + MER47A DNA MER2_type 45 161 -205 2353 95 3 0 chr1 36927677 36927983 -205736370 + AluSq SINE Alu 1 307 -6 499 267 78 42 chr1 36928727 36928785 -205735568 + MIR SINE MIR 37 91 -171 1678 174 33 4 chr1 36928785 36929061 -205735292 - AluJb SINE Alu 0 312 29 499 267 78 42 chr1 36929061 36929219 -205735134 + MIR SINE MIR 91 261 -1 655 172 78 117 chr1 36929451 36929631 -205734722 + MIR SINE MIR 52 224 -38 260 227 60 32 chr1 36930204 36930305 -205734048 - L1ME4a LINE L1 -743 5408 5315 443 285 79 47 chr1 36930597 36930832 -205733521 - MIR SINE MIR -1 261 17 827 173 19 125 chr1 36931014 36931036 -205733317 + MER5A DNA MER1_type 4 27 -162 2222 101 0 44 chr1 36931036 36931352 -205733001 + AluSx SINE Alu 1 302 -10 827 173 19 125 chr1 36931352 36931537 -205732816 + MER5A DNA MER1_type 27 189 0 355 259 149 30 chr1 36931625 36931697 -205732656 + MIR SINE MIR 2 64 -198 1964 135 46 0 chr1 36931697 36931979 -205732374 + AluSx SINE Alu 1 295 -17 355 259 149 30 chr1 36931979 36932107 -205732246 + MIR SINE MIR 64 226 -36 378 355 154 31 chr1 36932166 36932524 -205731829 + L2 LINE L2 2871 3272 0 1850 131 53 0 chr1 36932859 36933141 -205731212 + AluSg SINE Alu 1 297 -13 1841 143 33 13 chr1 36933270 36933571 -205730782 + AluJo SINE Alu 1 307 -5 271 217 0 0 chr1 36933573 36933619 -205730734 + MIR SINE MIR 30 75 -133 1033 214 229 23 chr1 36933757 36933840 -205730513 + L2 LINE L2 2444 2509 -805 2390 140 9 6 chr1 36933840 36934183 -205730170 + MER2 DNA MER2_type 1 344 0 1033 214 229 23 chr1 36934183 36934449 -205729904 + L2 LINE L2 2509 2865 -449 441 263 117 29 chr1 36934515 36934755 -205729598 + MIR SINE MIR 2 262 0 325 292 25 40 chr1 36934756 36934892 -205729461 - MER5B DNA MER1_type 0 178 60 836 147 14 35 chr1 36935585 36935687 -205728666 - AluSc SINE Alu -74 235 135 2264 117 0 3 chr1 36935687 36935994 -205728359 - AluSx SINE Alu -6 306 1 836 147 14 35 chr1 36935994 36936034 -205728319 - AluSc SINE Alu -174 135 96 2338 106 0 3 chr1 36936054 36936365 -205727988 - AluSx SINE Alu -2 310 1 265 149 21 0 chr1 36936365 36936412 -205727941 - L1M4 LINE L1 -683 5491 5444 * 2770 185 113 101 chr1 36936407 36936587 -205727766 - L1M4 LINE L1 -743 5403 5227 2528 66 0 3 chr1 36936587 36936892 -205727461 + AluY SINE Alu 1 304 -7 2770 185 113 101 chr1 36936892 36937164 -205727189 - L1M4 LINE L1 -919 5227 4960 2367 91 3 0 chr1 36937164 36937462 -205726891 + AluSp SINE Alu 9 307 -6 2770 185 113 101 chr1 36937462 36937631 -205726722 - L1M4 LINE L1 -1186 4960 4795 1675 148 36 22 chr1 36937631 36937909 -205726444 + AluJb SINE Alu 21 302 -10 258 32 0 0 chr1 36937910 36937941 -205726412 + (TA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr1 36937940 36937964 -205726389 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 2770 185 113 101 chr1 36937941 36938289 -205726064 - L1M4 LINE L1 -1351 4795 4509 1959 153 0 3 chr1 36938289 36938589 -205725764 - AluSx SINE Alu -13 299 1 2770 185 113 101 chr1 36938589 36938982 -205725371 - L1M4 LINE L1 -1637 4509 4122 1815 83 120 26 chr1 36938999 36939158 -205725195 - AluY SINE Alu 0 311 168 2071 124 17 0 chr1 36939158 36939449 -205724904 - AluSp SINE Alu -17 296 1 1815 83 120 26 chr1 36939449 36939584 -205724769 - AluY SINE Alu -143 168 1 2279 100 0 7 chr1 36939611 36939912 -205724441 - AluSx SINE Alu -13 299 1 829 155 8 0 chr1 36939915 36940044 -205724309 - AluSq/x SINE Alu -179 133 4 519 184 153 0 chr1 36940077 36940175 -205724178 + FLAM_C SINE Alu 3 115 -18 984 183 26 7 chr1 36940184 36940414 -205723939 - AluJb SINE Alu -23 289 5 276 182 0 0 chr1 36940447 36940535 -205723818 + (TA)n Simple_repeat Simple_repeat 2 89 0 1323 72 22 22 chr1 36940536 36940692 -205723661 - AluY SINE Alu -23 288 130 1702 67 8 38 chr1 36940692 36940964 -205723389 - AluY SINE Alu 0 311 66 1323 72 22 22 chr1 36940964 36940988 -205723365 - AluY SINE Alu -180 131 108 882 150 52 26 chr1 36940990 36941143 -205723210 + FRAM SINE Alu 1 157 -9 467 174 283 0 chr1 36941149 36941241 -205723112 - FLAM_C SINE Alu -15 118 1 556 192 48 8 chr1 36941244 36941369 -205722984 - L1MEc LINE L1 -3060 3155 3026 1998 147 10 3 chr1 36941369 36941675 -205722678 - AluJb SINE Alu -4 308 1 2182 119 3 7 chr1 36941683 36941985 -205722368 - AluSg SINE Alu -9 301 1 770 167 70 87 chr1 36941998 36942297 -205722056 - L1MEc LINE L1 -4031 2365 2072 815 224 7 0 chr1 36942302 36942449 -205721904 - FRAM SINE Alu -12 164 17 2431 74 7 0 chr1 36942477 36942776 -205721577 - AluSp SINE Alu -12 301 1 751 228 70 21 chr1 36942778 36943019 -205721334 - L1MEc LINE L1 -4529 1867 1615 334 264 174 7 chr1 36943051 36943195 -205721158 - L1MEc LINE L1 -6192 204 37 23 68 0 0 chr1 36943447 36943491 -205720862 + AT_rich Low_complexity Low_complexity 1 44 0 2262 94 10 0 chr1 36943728 36944027 -205720326 + AluSq SINE Alu 6 307 -6 499 267 78 42 chr1 36944771 36944829 -205719524 + MIR SINE MIR 37 91 -171 1811 130 33 4 chr1 36944829 36945105 -205719248 - AluJb SINE Alu 0 312 29 499 267 78 42 chr1 36945105 36945263 -205719090 + MIR SINE MIR 91 261 -1 658 156 78 117 chr1 36945495 36945675 -205718678 + MIR SINE MIR 52 224 -38 260 227 60 32 chr1 36946248 36946349 -205718004 - L1M LINE L1 -743 5408 5315 443 285 79 47 chr1 36946641 36946876 -205717477 - MIR SINE MIR -1 261 17 878 164 19 125 chr1 36947058 36947080 -205717273 + MER5A DNA MER1_type 4 27 -162 2222 101 0 44 chr1 36947080 36947396 -205716957 + AluSx SINE Alu 1 302 -10 878 164 19 125 chr1 36947396 36947581 -205716772 + MER5A DNA MER1_type 27 189 0 365 254 154 35 chr1 36947668 36947740 -205716613 + MIR SINE MIR 2 64 -198 1981 131 46 0 chr1 36947740 36948022 -205716331 + AluSx SINE Alu 1 295 -17 365 254 154 35 chr1 36948022 36948150 -205716203 + MIR SINE MIR 64 226 -36 378 355 154 31 chr1 36948209 36948567 -205715786 + L2 LINE L2 2871 3272 0 2001 132 14 0 chr1 36948902 36949197 -205715156 + AluSx SINE Alu 1 299 -13 1841 143 33 13 chr1 36949324 36949625 -205714728 + AluJo SINE Alu 1 307 -5 271 217 0 0 chr1 36949627 36949673 -205714680 + MIR SINE MIR 30 75 -133 1002 217 229 23 chr1 36949811 36949894 -205714459 + L2 LINE L2 2444 2509 -805 2390 140 9 6 chr1 36949894 36950237 -205714116 + MER2 DNA MER2_type 1 344 0 1002 217 229 23 chr1 36950237 36950503 -205713850 + L2 LINE L2 2509 2865 -449 441 263 117 29 chr1 36950569 36950809 -205713544 + MIR SINE MIR 2 262 0 325 292 25 40 chr1 36950810 36950946 -205713407 - MER5B DNA MER1_type 0 178 60 2219 104 7 3 chr1 36953020 36953319 -205711034 - AluSp SINE Alu -13 300 1 2122 125 0 3 chr1 36955987 36956276 -205708077 - AluSx SINE Alu -22 290 3 180 231 231 58 chr1 36956754 36956858 -205707495 - MIR SINE MIR -67 141 20 205 273 0 18 chr1 36958317 36958372 -205705981 - L2 LINE L2 -2 3270 3217 266 263 45 11 chr1 36960000 36960100 -205704253 - MIR SINE MIR -67 141 51 206 317 28 42 chr1 36960600 36960742 -205703611 + L2 LINE L2 2595 2734 -580 2058 92 6 57 chr1 36960763 36960806 -205703547 + AluSg SINE Alu 1 45 -265 2429 66 3 0 chr1 36960806 36961107 -205703246 - AluSp SINE Alu -10 303 2 2058 92 6 57 chr1 36961107 36961380 -205702973 + AluSg SINE Alu 45 301 -9 710 209 95 38 chr1 36961418 36961629 -205702724 - MIR SINE MIR 0 262 40 418 286 209 9 chr1 36961697 36962046 -205702307 - HAL1 LINE L1 -117 2390 1972 260 341 11 51 chr1 36962220 36962396 -205701957 + L2 LINE L2 2955 3123 -149 222 245 0 0 chr1 36962402 36962451 -205701902 + A-rich Low_complexity Low_complexity 1 49 0 1380 128 9 18 chr1 36962595 36962821 -205701532 + AluJo SINE Alu 84 307 -5 477 310 55 0 chr1 36964208 36964353 -205700000 - MIR SINE MIR -107 155 3 208 219 37 37 chr1 36965626 36965708 -205698645 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 32 0 0 0 chr1 36966320 36966352 -205698001 + GC_rich Low_complexity Low_complexity 1 32 0 22 42 0 0 chr1 36966401 36966425 -205697928 + GC_rich Low_complexity Low_complexity 1 24 0 589 306 105 5 chr1 36967119 36967328 -205697025 - MIR SINE MIR -16 246 17 278 379 41 0 chr1 36967696 36967841 -205696512 - MIR3 SINE MIR -38 170 20 203 149 30 30 chr1 36968076 36968143 -205696210 + CT-rich Low_complexity Low_complexity 1 67 0 2092 91 14 0 chr1 36968723 36969008 -205695345 + AluSx SINE Alu 1 289 -23 240 282 0 39 chr1 36969013 36969091 -205695262 + L2 LINE L2 3197 3271 -1 355 268 0 0 chr1 36969098 36969180 -205695173 - L2 LINE L2 -2 3311 3230 2239 100 3 0 chr1 36969567 36969867 -205694486 - AluSq SINE Alu -10 303 3 340 308 37 0 chr1 36969898 36970005 -205694348 - MIR SINE MIR -99 163 53 368 216 0 0 chr1 36970283 36970357 -205693996 - MIR SINE MIR -112 150 77 290 296 96 96 chr1 36970437 36970781 -205693572 - L2 LINE L2 -51 3221 2878 936 289 117 33 chr1 36970894 36971612 -205692741 - L2 LINE L2 -1 3312 2530 199 267 0 19 chr1 36971799 36971904 -205692449 + G-rich Low_complexity Low_complexity 3 105 0 288 269 13 0 chr1 36972002 36972080 -205692273 - MIR SINE MIR -147 115 37 511 229 42 14 chr1 36972598 36972742 -205691611 + MIR SINE MIR 67 214 -48 322 304 234 25 chr1 36973485 36973686 -205690667 + MIR SINE MIR 20 262 0 822 126 160 46 chr1 36974754 36974929 -205689424 - AluJb SINE Alu -82 230 36 2272 71 17 0 chr1 36974976 36975270 -205689083 - AluY SINE Alu -12 299 1 2044 118 0 7 chr1 36975301 36975436 -205688917 + AluSg SINE Alu 1 135 -175 2281 85 16 0 chr1 36975436 36975741 -205688612 + AluSp SINE Alu 1 310 -3 2044 118 0 7 chr1 36975741 36975902 -205688451 + AluSg SINE Alu 135 295 -15 2254 73 0 27 chr1 36975906 36976207 -205688146 + AluY SINE Alu 1 293 -18 208 200 0 0 chr1 36976512 36976552 -205687801 + MIR SINE MIR 78 117 -91 450 311 30 24 chr1 36977650 36977817 -205686536 - MIR SINE MIR -2 260 93 535 298 15 0 chr1 36978474 36978487 -205685866 + MIR SINE MIR 30 41 -221 1729 153 13 23 chr1 36978487 36978650 -205685703 - AluJo SINE Alu -15 297 137 2332 77 0 3 chr1 36978650 36978948 -205685405 - AluY SINE Alu -14 297 1 1729 153 13 23 chr1 36978948 36979084 -205685269 - AluJo SINE Alu -175 137 1 535 298 15 0 chr1 36979084 36979248 -205685105 + MIR SINE MIR 41 211 -51 478 295 209 14 chr1 36980707 36980985 -205683368 + L2 LINE L2 2506 2837 -477 216 330 21 43 chr1 36981048 36981142 -205683211 + L2 LINE L2 3222 3313 0 1044 193 60 5 chr1 36983676 36983894 -205680459 - MIR SINE MIR -5 257 28 405 273 136 7 chr1 36984092 36984246 -205680107 + MIR SINE MIR 78 251 -11 180 294 0 110 chr1 36984910 36985019 -205679334 - MIR SINE MIR -34 228 132 1643 208 69 19 chr1 36985019 36985495 -205678858 - L1MC4 LINE L1 -3 8039 7540 325 257 40 20 chr1 36985496 36985597 -205678756 - MIR3 SINE MIR -49 159 57 293 244 67 3 chr1 36985632 36985767 -205678586 - MIR SINE MIR -5 257 71 332 333 29 22 chr1 36986066 36986204 -205678149 + MIR SINE MIR 124 262 0 247 308 120 8 chr1 36986982 36987099 -205677254 - L2 LINE L2 -42 3230 3101 311 304 54 9 chr1 36987236 36987348 -205677005 - MIR SINE MIR -114 148 32 402 269 135 14 chr1 36987549 36987690 -205676663 + MIR SINE MIR 104 261 -1 194 365 54 0 chr1 36988037 36988111 -205676242 - L2 LINE L2 -200 3072 2995 192 40 0 0 chr1 36989281 36989306 -205675047 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 202 347 61 10 chr1 36992376 36992474 -205671879 + MIR SINE MIR 43 145 -63 287 368 78 6 chr1 36992482 36992648 -205671705 + MIR SINE MIR 20 197 -65 459 269 145 32 chr1 36993454 36993640 -205670713 - MIR SINE MIR -16 246 40 279 292 25 4 chr1 36994036 36994136 -205670217 + MIR SINE MIR 81 187 -21 265 281 132 18 chr1 36994265 36994379 -205669974 - L2 LINE L2 0 3272 3146 281 293 61 0 chr1 36994469 36994568 -205669785 + MIR SINE MIR 79 183 -79 242 315 142 43 chr1 36994748 36995002 -205669351 - L3 LINE CR1 -221 1356 1078 186 43 0 0 chr1 36995002 36995025 -205669328 + (A)n Simple_repeat Simple_repeat 1 23 0 1679 166 3 30 chr1 36995027 36995329 -205669024 + AluJo SINE Alu 1 294 -18 396 266 28 18 chr1 36995411 36995520 -205668833 + MIR3 SINE MIR 67 176 -32 1085 132 136 53 chr1 36995864 36996092 -205668261 - AluJb SINE Alu -28 284 38 424 271 38 15 chr1 36996129 36996262 -205668091 - MIR SINE MIR -20 242 107 381 271 8 31 chr1 36996629 36996758 -205667595 - MIR SINE MIR -59 149 24 201 273 25 25 chr1 36996999 36997160 -205667193 + (CCCCG)n Simple_repeat Simple_repeat 2 162 0 23 0 0 0 chr1 36997206 36997229 -205667124 + GC_rich Low_complexity Low_complexity 1 23 0 229 258 112 11 chr1 36997324 36997413 -205666940 + MIR SINE MIR 23 120 -142 1758 87 0 80 chr1 36997583 36997858 -205666495 + AluSx SINE Alu 1 253 -59 314 253 56 126 chr1 36998664 36998727 -205665626 + L1ME LINE L1 5556 5622 -499 2359 52 3 39 chr1 36998727 36999034 -205665319 + AluY SINE Alu 1 296 -15 314 253 56 126 chr1 36999034 36999168 -205665185 + L1ME LINE L1 5622 5739 -382 2297 105 0 3 chr1 36999301 36999614 -205664739 + AluSx SINE Alu 1 312 0 472 260 24 23 chr1 36999901 37000070 -205664283 - MIR SINE MIR -57 151 13 369 297 10 0 chr1 37000335 37000436 -205663917 + MIR SINE MIR 45 146 -62 1999 113 4 0 chr1 37001031 37001305 -205663048 + AluSx SINE Alu 1 275 -37 282 194 0 0 chr1 37001343 37001405 -205662948 + CT-rich Low_complexity Low_complexity 3 64 0 2007 130 7 3 chr1 37001407 37001706 -205662647 - AluSx SINE Alu -1 311 12 1802 148 0 14 chr1 37001727 37002011 -205662342 - AluJb SINE Alu -19 293 14 189 0 0 0 chr1 37002019 37002040 -205662313 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2275 98 0 3 chr1 37002606 37002912 -205661441 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 37002913 37002934 -205661419 + AT_rich Low_complexity Low_complexity 1 21 0 910 325 214 9 chr1 37003015 37003889 -205660464 + L2 LINE L2 1617 2696 -618 2162 95 0 51 chr1 37003889 37004205 -205660148 - AluSg SINE Alu -10 300 1 910 325 214 9 chr1 37004205 37004263 -205660090 + L2 LINE L2 2696 2741 -573 1132 176 59 14 chr1 37004284 37004506 -205659847 + AluJo SINE Alu 1 232 -80 691 139 8 0 chr1 37004539 37004668 -205659685 + L1M4 LINE L1 4477 4606 -1540 636 234 24 1 chr1 37004678 37004851 -205659502 + L1PB4 LINE L1 5994 6165 -1 3172 184 11 30 chr1 37004856 37005119 -205659234 + L1M4 LINE L1 4614 4880 -1304 1491 194 9 44 chr1 37005119 37005434 -205658919 - AluJo SINE Alu -8 304 1 3172 184 11 30 chr1 37005434 37006187 -205658166 + L1M4 LINE L1 4880 5607 -577 1327 159 9 9 chr1 37006187 37006413 -205657940 + AluJb SINE Alu 87 312 0 668 144 17 0 chr1 37006419 37006537 -205657816 + L1M4 LINE L1 5601 5720 -454 1599 296 268 19 chr1 37006561 37007029 -205657324 + L2 LINE L2 1479 1829 -1484 2256 91 0 0 chr1 37007029 37007327 -205657026 - AluY SINE Alu -13 298 1 1599 296 268 19 chr1 37007327 37007354 -205656999 + L2 LINE L2 1829 1848 -1465 414 0 0 0 chr1 37007354 37007400 -205656953 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1599 296 268 19 chr1 37007400 37008124 -205656229 + L2 LINE L2 1848 3003 -310 1087 144 80 0 chr1 37008135 37008322 -205656031 + MER3 DNA MER1_type 1 202 -7 467 318 33 43 chr1 37008361 37008572 -205655781 + L2 LINE L2 3104 3312 -1 445 245 51 0 chr1 37008625 37008723 -205655630 + Charlie1 DNA MER1_type 1 103 -2658 2414 56 0 3 chr1 37008723 37009028 -205655325 - AluY SINE Alu -7 304 1 644 133 10 0 chr1 37009028 37009126 -205655227 - AluSg/x SINE Alu -18 292 194 2157 105 3 0 chr1 37009126 37009420 -205654933 - AluSg SINE Alu -15 295 1 9903 103 12 29 chr1 37009422 37009500 -205654853 - Tigger1 DNA MER2_type -727 1691 1613 2427 74 3 0 chr1 37009500 37009812 -205654541 - AluSp SINE Alu 0 313 1 9903 103 12 29 chr1 37009812 37010952 -205653401 - Tigger1 DNA MER2_type -805 1613 499 2400 69 0 0 chr1 37010952 37011258 -205653095 - AluY SINE Alu -5 306 1 9903 103 12 29 chr1 37011258 37011509 -205652844 - Tigger1 DNA MER2_type -1919 499 245 1896 172 71 0 chr1 37011509 37011834 -205652519 + MER7A DNA MER2_type 1 346 0 1445 158 8 8 chr1 37011838 37012079 -205652274 - Tigger1 DNA MER2_type -2176 242 2 1645 151 49 65 chr1 37012079 37012375 -205651978 + Charlie1 DNA MER1_type 2339 2638 -123 1983 146 0 0 chr1 37012375 37012669 -205651684 - AluJb SINE Alu -18 294 1 1645 151 49 65 chr1 37012669 37012743 -205651610 + Charlie1 DNA MER1_type 2638 2704 -57 2158 96 0 3 chr1 37012743 37013036 -205651317 - AluSq SINE Alu -21 292 1 1645 151 49 65 chr1 37013036 37013094 -205651259 + Charlie1 DNA MER1_type 2704 2761 0 1689 157 20 17 chr1 37013472 37013771 -205650582 + AluJb SINE Alu 1 300 -12 2250 104 0 0 chr1 37014174 37014481 -205649872 - AluSg SINE Alu -3 307 1 857 219 61 61 chr1 37014565 37014738 -205649615 + MIR SINE MIR 8 183 -79 925 92 0 63 chr1 37014738 37014880 -205649473 + FLAM_C SINE Alu 1 133 0 857 219 61 61 chr1 37014880 37014953 -205649400 + MIR SINE MIR 182 254 -8 2127 82 3 14 chr1 37014954 37015246 -205649107 - AluSc SINE Alu -20 289 1 804 207 110 90 chr1 37015536 37015826 -205648527 - MLT1K LTR MaLR 0 588 293 1828 115 45 10 chr1 37016046 37016334 -205648019 - AluSx SINE Alu -9 303 6 364 265 10 0 chr1 37016844 37016942 -205647411 + MIR3 SINE MIR 109 207 -1 259 186 86 29 chr1 37017025 37017095 -205647258 - LTR33A LTR ERVL -2 521 448 2219 98 3 3 chr1 37017115 37017421 -205646932 + AluSx SINE Alu 1 306 -6 1961 103 53 0 chr1 37017452 37017733 -205646620 + AluSq SINE Alu 1 296 -17 3518 137 58 118 chr1 37017899 37018032 -205646321 + L1MB7 LINE L1 5195 5334 -850 2343 90 0 0 chr1 37018032 37018343 -205646010 + AluY SINE Alu 1 311 0 3518 137 58 118 chr1 37018343 37018523 -205645830 + L1MB7 LINE L1 5334 5523 -661 283 143 0 0 chr1 37018523 37018565 -205645788 - MLT1K LTR MaLR -254 334 293 3518 137 58 118 chr1 37018565 37018877 -205645476 + L1MB7 LINE L1 5523 5798 -386 2031 130 0 0 chr1 37018877 37019185 -205645168 + AluSx SINE Alu 1 308 -4 3518 137 58 118 chr1 37019185 37019445 -205644908 + L1MB7 LINE L1 5798 6072 -112 9913 187 56 62 chr1 37019445 37021927 -205642426 - HERVS71 LTR ERV1 -6507 2471 4 4316 67 10 38 chr1 37021929 37022509 -205641844 - LTR6A LTR ERV1 0 564 1 1975 141 74 37 chr1 37022509 37022569 -205641784 - L1MA7 LINE L1 -143 6148 6092 2149 144 105 5 chr1 37022569 37022958 -205641395 - MSTA LTR MaLR 0 428 1 1975 141 74 37 chr1 37022958 37023000 -205641353 - L1MA7 LINE L1 -199 6092 6053 288 0 0 0 chr1 37023000 37023032 -205641321 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1975 141 74 37 chr1 37023032 37023331 -205641022 - L1MA7 LINE L1 -238 6053 5731 353 302 22 28 chr1 37023688 37023867 -205640486 - ERVL LTR ERVL -350 5414 5237 * 922 309 75 28 chr1 37023865 37024584 -205639769 - ERVL LTR ERVL -2866 2898 2018 2784 134 40 15 chr1 37024584 37025040 -205639313 - MLT1C LTR MaLR 0 467 1 922 309 75 28 chr1 37025040 37025413 -205638940 - ERVL LTR ERVL -3746 2018 1664 2027 123 0 0 chr1 37025719 37026004 -205638349 - AluSx SINE Alu -27 285 1 1894 152 0 7 chr1 37026006 37026302 -205638051 - AluJo SINE Alu -18 294 1 2093 118 0 0 chr1 37026400 37026696 -205637657 + AluSx SINE Alu 1 296 -16 332 290 70 30 chr1 37027617 37027817 -205636536 - LTR67 LTR ERVL 0 557 350 935 290 121 22 chr1 37028356 37028760 -205635593 + L2 LINE L2 2804 3247 -66 2371 57 0 3 chr1 37028852 37029149 -205635204 - AluY SINE Alu -15 296 1 226 199 221 38 chr1 37029370 37029501 -205634852 - MIR SINE MIR -50 212 58 1950 112 3 3 chr1 37029993 37030279 -205634074 + AluSx SINE Alu 1 286 -26 2188 79 3 3 chr1 37030434 37030724 -205633629 - AluSc SINE Alu -19 290 1 2147 99 3 3 chr1 37030729 37031033 -205633320 - AluSx SINE Alu -8 304 1 1707 126 31 11 chr1 37031357 37031643 -205632710 - AluSx SINE Alu -20 292 1 1894 152 10 0 chr1 37033024 37033327 -205631026 + AluJo SINE Alu 1 306 -6 258 194 0 0 chr1 37033726 37033788 -205630565 + A-rich Low_complexity Low_complexity 1 62 0 194 329 195 18 chr1 37034289 37034669 -205629684 + L2 LINE L2 2531 2977 -337 1818 129 21 0 chr1 37034782 37035062 -205629291 - AluSx SINE Alu -12 300 15 239 231 77 0 chr1 37035725 37035790 -205628563 + MIR SINE MIR 39 108 -100 324 330 32 38 chr1 37035808 37035993 -205628360 + MER5A DNA MER1_type 3 186 -3 437 248 48 48 chr1 37035823 37035968 -205628385 - MER5B DNA MER1_type -3 175 31 691 287 100 45 chr1 37035988 37036277 -205628076 - L3 LINE CR1 -44 1533 1229 1527 176 38 3 chr1 37036536 37036825 -205627528 + AluJo SINE Alu 1 299 -13 2062 121 10 0 chr1 37036857 37037155 -205627198 + AluSg SINE Alu 1 301 -9 2120 109 0 0 chr1 37037410 37037704 -205626649 + AluY SINE Alu 1 294 -17 180 0 0 0 chr1 37037707 37037727 -205626626 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 313 299 150 17 chr1 37038151 37038352 -205626001 - MIR SINE MIR -13 249 16 2393 62 0 3 chr1 37038453 37038760 -205625593 + AluY SINE Alu 1 306 -5 189 309 36 18 chr1 37038819 37038874 -205625479 + MIR3 SINE MIR 15 70 -138 1904 107 17 27 chr1 37038924 37039223 -205625130 + AluSc SINE Alu 1 296 -13 201 306 37 74 chr1 37039223 37039331 -205625022 + MIR SINE MIR 126 229 -33 251 254 52 10 chr1 37039895 37039976 -205624377 + MIR SINE MIR 16 97 -111 549 269 183 18 chr1 37040194 37040285 -205624068 + MIR SINE MIR 3 78 -184 2440 61 0 0 chr1 37040285 37040582 -205623771 - AluY SINE Alu -14 297 1 549 269 183 18 chr1 37040582 37040709 -205623644 + MIR SINE MIR 78 257 -5 1517 159 43 33 chr1 37041464 37041766 -205622587 - AluJb SINE Alu -7 305 1 258 260 173 55 chr1 37042713 37042840 -205621513 + L2 LINE L2 3171 3312 -1 2179 100 3 0 chr1 37042972 37043273 -205621080 + AluSx SINE Alu 1 302 -10 200 182 0 0 chr1 37045492 37045525 -205618828 + (CA)n Simple_repeat Simple_repeat 2 34 0 2148 76 7 33 chr1 37045566 37045867 -205618486 - AluSx SINE Alu -19 293 1 1600 167 44 7 chr1 37046131 37046425 -205617928 - AluJb SINE Alu -1 311 7 2303 76 7 0 chr1 37046429 37046731 -205617622 - AluSc SINE Alu -5 304 1 1883 130 10 13 chr1 37047394 37047693 -205616660 - AluSx SINE Alu -14 298 1 1518 178 0 53 chr1 37047906 37048055 -205616298 + AluJo SINE Alu 1 125 -187 2118 82 0 26 chr1 37048055 37048358 -205615995 + AluSg SINE Alu 1 295 -15 1518 178 0 53 chr1 37048358 37048529 -205615824 + AluJo SINE Alu 125 304 -8 1335 161 51 71 chr1 37048557 37048868 -205615485 - AluJo SINE Alu -7 305 1 2355 73 0 10 chr1 37049493 37049806 -205614547 - AluSq SINE Alu -3 310 1 2186 97 3 0 chr1 37050051 37050351 -205614002 + AluSq SINE Alu 1 301 -12 301 355 47 55 chr1 37050471 37050727 -205613626 + L2 LINE L2 2903 3156 -116 1942 108 0 58 chr1 37051044 37051369 -205612984 + AluJb SINE Alu 3 308 -4 1577 148 0 93 chr1 37051542 37051678 -205612675 + AluJb SINE Alu 1 148 -164 2019 108 3 38 chr1 37051678 37051993 -205612360 + AluSx SINE Alu 1 304 -8 1577 148 0 93 chr1 37051993 37052200 -205612153 + AluJb SINE Alu 148 312 0 191 292 56 11 chr1 37052527 37052616 -205611737 + L2 LINE L2 2556 2648 -666 697 157 19 0 chr1 37052788 37052896 -205611457 - FLAM_A SINE Alu -30 112 3 2056 121 0 0 chr1 37053146 37053436 -205610917 + AluSx SINE Alu 1 290 -22 352 200 150 57 chr1 37053788 37053928 -205610425 - MER103 DNA DNA -1 165 13 2313 70 0 13 chr1 37054029 37054327 -205610026 + AluY SINE Alu 1 294 -17 2274 55 0 45 chr1 37055350 37055658 -205608695 + AluY SINE Alu 1 294 -17 878 190 6 0 chr1 37056089 37056247 -205608106 + FRAM SINE Alu 6 164 -12 1582 121 51 12 chr1 37056334 37056429 -205607924 + AluJo SINE Alu 26 116 -196 237 33 0 0 chr1 37056429 37056459 -205607894 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1582 121 51 12 chr1 37056459 37056619 -205607734 + AluJo SINE Alu 116 291 -21 474 280 52 28 chr1 37056961 37057144 -205607209 + MIR3 SINE MIR 8 189 -67 21 104 0 0 chr1 37057223 37057300 -205607053 + AT_rich Low_complexity Low_complexity 1 77 0 1955 134 13 0 chr1 37057565 37057863 -205606490 - AluSx SINE Alu -10 302 1 2671 45 0 7 chr1 37059028 37059338 -205605015 + AluSx SINE Alu 1 308 -4 204 229 12 24 chr1 37059947 37060030 -205604323 + (CCG)n Simple_repeat Simple_repeat 1 82 0 207 248 0 30 chr1 37060063 37060164 -205604189 + G-rich Low_complexity Low_complexity 4 101 0 21 0 0 0 chr1 37060183 37060204 -205604149 + GC_rich Low_complexity Low_complexity 1 21 0 248 228 13 13 chr1 37060314 37060393 -205603960 + (CCG)n Simple_repeat Simple_repeat 2 80 0 225 234 0 0 chr1 37060519 37060566 -205603787 + (CGGGG)n Simple_repeat Simple_repeat 5 51 0 624 243 93 55 chr1 37061207 37061266 -205603087 - MLT1J LTR MaLR 0 511 456 1824 171 13 7 chr1 37061266 37061565 -205602788 - AluJo SINE Alu -11 301 1 624 243 93 55 chr1 37061565 37061744 -205602609 - MLT1J LTR MaLR -55 456 285 2609 58 0 0 chr1 37061744 37062053 -205602300 + AluY SINE Alu 1 309 -2 624 243 93 55 chr1 37062053 37062216 -205602137 - MLT1J LTR MaLR -226 285 41 1877 171 0 0 chr1 37062223 37062509 -205601844 + AluJb SINE Alu 1 286 -26 672 262 33 0 chr1 37062574 37062757 -205601596 - L2 LINE L2 -1216 2098 1910 352 211 36 79 chr1 37062849 37063045 -205601308 - MLT1J2 LTR MaLR -2 428 266 2178 90 18 0 chr1 37063087 37063390 -205600963 + AluSx SINE Alu 1 308 0 427 372 73 21 chr1 37063993 37064415 -205599938 - L2 LINE L2 -3 3269 2826 2163 131 3 6 chr1 37064418 37064731 -205599622 + AluSx SINE Alu 1 312 0 1081 148 0 0 chr1 37064944 37065133 -205599220 - L1MB3 LINE L1 0 6183 5995 229 251 151 67 chr1 37065194 37065373 -205598980 - MLT1K LTR MaLR -269 319 126 2264 108 3 19 chr1 37065672 37065988 -205598365 - AluSx SINE Alu -1 311 1 2238 129 0 0 chr1 37065990 37066292 -205598061 - AluSx SINE Alu -10 302 1 235 348 22 22 chr1 37066564 37066699 -205597654 + L2 LINE L2 2508 2642 -672 204 318 67 31 chr1 37066763 37066958 -205597395 + L2 LINE L2 2836 3037 -235 513 233 31 8 chr1 37067039 37067168 -205597185 + MER94 DNA DNA 1 132 -2 349 239 128 0 chr1 37067205 37067322 -205597031 - MIR SINE MIR -54 208 77 1006 177 0 0 chr1 37067521 37067679 -205596674 - FAM SINE Alu -8 41 1 633 197 49 76 chr1 37067784 37068007 -205596346 - L2 LINE L2 0 3313 3097 183 222 156 11 chr1 37068000 37068090 -205596263 - L2 LINE L2 -775 2539 2437 * 186 43 0 0 chr1 37069030 37069053 -205595300 + (T)n Simple_repeat Simple_repeat 1 23 0 6658 78 13 33 chr1 37069065 37070213 -205594140 - SVA Other Other -551 1386 433 1345 91 23 91 chr1 37070230 37070615 -205593738 - SVA Other Other -520 866 508 5858 80 28 6 chr1 37070631 37071431 -205592922 - SVA Other Other -520 866 50 342 0 0 0 chr1 37071436 37071474 -205592879 + (GGGAGA)n Simple_repeat Simple_repeat 2 39 0 2420 54 34 0 chr1 37071961 37072080 -205592273 + AluY SINE Alu 2 115 -196 423 0 0 0 chr1 37072080 37072127 -205592226 + (CA)n Simple_repeat Simple_repeat 2 48 0 2420 54 34 0 chr1 37072127 37072301 -205592052 + AluY SINE Alu 115 305 -6 519 220 65 30 chr1 37072353 37072521 -205591832 - Charlie8 DNA MER1_type -2185 232 59 2327 89 0 0 chr1 37072673 37072982 -205591371 + AluSg SINE Alu 1 309 0 1025 127 18 0 chr1 37073758 37073923 -205590430 + Tigger5 DNA MER2_type 2130 2297 -26 923 103 0 0 chr1 37073933 37074050 -205590303 + AluSq/x SINE Alu 1 117 -195 372 80 0 0 chr1 37074050 37074100 -205590253 + Alu SINE Alu 245 294 -7 504 273 28 40 chr1 37074108 37074167 -205590186 - MIR SINE MIR -23 239 181 2153 119 7 0 chr1 37074167 37074462 -205589891 - AluSx SINE Alu -15 297 1 504 273 28 40 chr1 37074462 37074578 -205589775 - MIR SINE MIR -81 181 66 1759 166 3 11 chr1 37074607 37074891 -205589462 + AluJo SINE Alu 18 299 -13 402 21 0 0 chr1 37074960 37075007 -205589346 + (CA)n Simple_repeat Simple_repeat 1 47 0 291 275 60 7 chr1 37075142 37075291 -205589062 + L1ME4a LINE L1 5963 6119 -2 875 111 103 0 chr1 37075373 37075499 -205588854 + AluSx SINE Alu 1 139 -173 1354 106 17 0 chr1 37076124 37076303 -205588050 + AluSx SINE Alu 119 300 -10 563 242 71 79 chr1 37076375 37076627 -205587726 - MIR SINE MIR 0 262 13 315 201 175 25 chr1 37076720 37076842 -205587511 - MIR3 SINE MIR -40 168 42 267 291 17 68 chr1 37077221 37077338 -205587015 - MIR SINE MIR 0 262 152 251 299 0 13 chr1 37077340 37077417 -205586936 + MIR SINE MIR 31 106 -156 892 209 96 115 chr1 37077417 37077836 -205586517 - L2 LINE L2 -3 3310 2898 2242 90 4 0 chr1 37077836 37078169 -205586184 + AluSc SINE Alu 1 334 0 892 209 96 115 chr1 37078169 37078218 -205586135 - L2 LINE L2 -415 2898 2850 300 267 124 55 chr1 37078248 37078450 -205585903 + L2 LINE L2 3098 3313 0 369 0 0 0 chr1 37078453 37078494 -205585859 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 543 253 7 33 chr1 37078599 37078749 -205585604 + MIR SINE MIR 36 181 -81 2207 120 3 0 chr1 37079117 37079416 -205584937 - AluSx SINE Alu -12 300 1 1739 48 68 0 chr1 37079476 37079682 -205584671 - AluY SINE Alu -91 220 1 596 245 61 0 chr1 37079682 37079853 -205584500 - MIR SINE MIR -58 204 20 295 282 122 15 chr1 37080243 37080374 -205583979 + MIR3 SINE MIR 12 156 -52 600 284 101 0 chr1 37080872 37081080 -205583273 - MIR SINE MIR -32 230 2 418 275 114 0 chr1 37081095 37081226 -205583127 - MIR3 SINE MIR -10 198 53 261 331 99 8 chr1 37081511 37081632 -205582721 + L2 LINE L2 2969 3100 -172 357 184 66 0 chr1 37081993 37082069 -205582284 + MLT1D LTR MaLR 259 339 -166 2482 93 0 0 chr1 37082133 37082435 -205581918 - AluSx SINE Alu -10 302 1 2442 74 13 3 chr1 37083306 37083605 -205580748 + AluSg SINE Alu 1 302 -8 1879 119 43 40 chr1 37083838 37084141 -205580212 - AluJb SINE Alu -8 304 1 301 274 29 103 chr1 37084199 37084374 -205579979 + MIR SINE MIR 48 209 -53 * 788 159 147 0 chr1 37084366 37084523 -205579830 + MER5A DNA MER1_type 10 189 0 192 309 0 0 chr1 37084704 37084759 -205579594 - L3 LINE CR1 -97 1480 1426 410 282 90 41 chr1 37084917 37085162 -205579191 - L3 LINE CR1 -507 1070 814 618 277 78 19 chr1 37085545 37085713 -205578640 + MIR SINE MIR 23 180 -82 2415 96 0 0 chr1 37085713 37086015 -205578338 + AluSx SINE Alu 1 302 -10 2511 85 0 3 chr1 37086015 37086321 -205578032 + AluY SINE Alu 1 305 -6 618 277 78 19 chr1 37086321 37086357 -205577996 + MIR SINE MIR 179 240 -22 250 326 11 0 chr1 37086551 37086640 -205577713 + L2 LINE L2 3145 3234 -38 2228 113 0 44 chr1 37086686 37087005 -205577348 + AluSx SINE Alu 1 305 -7 221 250 0 0 chr1 37087015 37087071 -205577282 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 419 202 78 39 chr1 37087952 37088081 -205576272 + MIR SINE MIR 79 212 -50 214 309 62 0 chr1 37088858 37088939 -205575414 + MIR SINE MIR 63 148 -114 2045 153 10 0 chr1 37088939 37089246 -205575107 - AluJo SINE Alu -2 310 1 288 236 41 86 chr1 37089289 37089479 -205574874 + MIR SINE MIR 36 219 -43 204 220 0 20 chr1 37089762 37089812 -205574541 + MIR SINE MIR 38 86 -122 395 119 48 71 chr1 37089887 37089971 -205574382 + MLT2B1 LTR ERVL 341 422 -98 216 258 52 31 chr1 37089995 37090092 -205574261 + MIR SINE MIR 63 161 -101 2376 100 0 10 chr1 37090131 37090442 -205573911 + AluSg SINE Alu 1 308 -2 2545 66 10 0 chr1 37090487 37090792 -205573561 - AluY SINE Alu -3 308 1 351 278 47 24 chr1 37090884 37091053 -205573300 + L2 LINE L2 2907 3079 -193 255 217 22 11 chr1 37091569 37091661 -205572692 + CT-rich Low_complexity Low_complexity 4 96 0 2294 116 0 0 chr1 37091671 37091963 -205572390 - AluSx SINE Alu -20 292 1 2078 152 3 3 chr1 37091963 37092266 -205572087 - AluJo SINE Alu -9 303 1 183 354 89 0 chr1 37093044 37093123 -205571230 + MIR SINE MIR 36 121 -87 198 329 29 14 chr1 37093262 37093332 -205571021 + MIR SINE MIR 37 107 -101 225 272 196 0 chr1 37093466 37093558 -205570795 + L2 LINE L2 3137 3246 -26 184 301 96 0 chr1 37094338 37094411 -205569942 + L2 LINE L2 3154 3233 -39 341 304 16 8 chr1 37094551 37094676 -205569677 - MIR3 SINE MIR -78 130 5 516 276 93 57 chr1 37095078 37095262 -205569091 + MIR SINE MIR 8 205 -57 1982 117 55 14 chr1 37095262 37095384 -205568969 + AluSx SINE Alu 1 117 -195 2959 0 0 0 chr1 37095384 37095691 -205568662 + AluYa5 SINE Alu 1 307 -4 1982 117 55 14 chr1 37095691 37095859 -205568494 + AluSx SINE Alu 117 303 -9 516 276 93 57 chr1 37095859 37095920 -205568433 + MIR SINE MIR 205 262 0 423 345 115 11 chr1 37097076 37097337 -205567016 + L2 LINE L2 2985 3272 0 331 316 103 0 chr1 37097341 37097458 -205566895 - MIR SINE MIR -108 154 26 500 290 130 53 chr1 37097678 37097853 -205566500 + MIR SINE MIR 8 203 -59 2164 128 3 0 chr1 37097853 37098149 -205566204 - AluSx SINE Alu -14 298 2 500 290 130 53 chr1 37098149 37098180 -205566173 + MIR SINE MIR 203 230 -32 627 275 150 73 chr1 37098446 37098900 -205565453 + MLT1K LTR MaLR 100 588 0 225 325 65 0 chr1 37098938 37099015 -205565338 - L2 LINE L2 0 3272 3191 504 236 203 0 chr1 37099211 37099359 -205564994 + MLT1K LTR MaLR 156 333 -255 206 278 72 21 chr1 37099437 37099534 -205564819 - L2 LINE L2 -3 3269 3168 284 256 77 12 chr1 37099626 37099794 -205564559 - L1ME4a LINE L1 -4 6117 5939 1217 146 51 8 chr1 37099804 37100057 -205564296 + L1MD3 LINE L1 7732 7995 0 300 83 0 83 chr1 37100090 37100150 -205564203 + FLAM_A SINE Alu 79 133 0 262 264 256 25 chr1 37100162 37100404 -205563949 - L1ME4a LINE L1 -208 5913 5616 300 254 100 9 chr1 37100417 37100527 -205563826 - MIR SINE MIR -10 252 133 392 314 54 27 chr1 37101100 37101285 -205563068 - MIR SINE MIR -61 201 12 1659 107 176 14 chr1 37101605 37101895 -205562458 - MER1B DNA MER1_type 0 337 1 2315 111 0 7 chr1 37102274 37102581 -205561772 - AluSg SINE Alu -5 305 1 398 286 233 14 chr1 37103405 37103615 -205560738 + MIR SINE MIR 7 262 0 184 227 253 0 chr1 37103859 37103934 -205560419 - MIR SINE MIR -96 112 19 450 253 104 40 chr1 37104175 37104377 -205559976 + MIR SINE MIR 16 230 -32 296 338 58 7 chr1 37105096 37105250 -205559103 - MIR SINE MIR -6 256 95 195 286 24 24 chr1 37105229 37105313 -205559040 - MIR3 SINE MIR -122 86 3 * 21 0 0 0 chr1 37106189 37106210 -205558143 + AT_rich Low_complexity Low_complexity 1 21 0 1892 185 0 3 chr1 37108207 37108515 -205555838 + AluJb SINE Alu 1 307 -5 236 30 30 0 chr1 37108577 37108610 -205555743 + (CA)n Simple_repeat Simple_repeat 1 34 0 266 230 0 40 chr1 37110017 37110091 -205554262 + A-rich Low_complexity Low_complexity 5 75 0 2081 117 27 7 chr1 37111201 37111499 -205552854 + AluSx SINE Alu 1 304 -8 853 126 0 30 chr1 37111666 37111801 -205552552 + MER2 DNA MER2_type 2 132 -213 2433 89 0 0 chr1 37111801 37112103 -205552250 - AluY SINE Alu -9 302 1 1323 145 9 41 chr1 37112105 37112271 -205552082 - AluJo SINE Alu -15 297 127 217 47 47 23 chr1 37112271 37112314 -205552039 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2345 78 0 3 chr1 37112314 37112597 -205551756 - AluSg SINE Alu -28 282 1 1323 145 9 41 chr1 37112597 37112650 -205551703 - AluJo SINE Alu -183 129 84 465 233 93 56 chr1 37112652 37112867 -205551486 + MER2 DNA MER2_type 123 345 0 1616 180 3 39 chr1 37113348 37113654 -205550699 - AluJb SINE Alu -13 299 5 261 152 0 0 chr1 37113977 37114023 -205550330 + Alu SINE Alu 250 295 -6 208 346 13 0 chr1 37114111 37114189 -205550164 + MIR SINE MIR 30 108 -100 322 255 71 14 chr1 37115350 37115491 -205548862 + L1ME LINE L1 5676 5824 -297 369 0 0 0 chr1 37115781 37115822 -205548531 + (CA)n Simple_repeat Simple_repeat 2 42 0 469 293 74 44 chr1 37115980 37116155 -205548198 - MIR SINE MIR -7 255 87 2250 119 0 0 chr1 37116155 37116449 -205547904 + AluSx SINE Alu 1 294 -18 2050 120 10 10 chr1 37116457 37116749 -205547604 + AluSx SINE Alu 1 292 -20 469 293 74 44 chr1 37116749 37116793 -205547560 - MIR SINE MIR -181 81 20 2142 134 7 3 chr1 37117944 37118249 -205546104 - AluSx SINE Alu -6 306 1 1255 212 93 14 chr1 37118873 37118994 -205545359 + AluJo SINE Alu 1 111 -201 306 0 0 0 chr1 37118994 37119028 -205545325 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1255 212 93 14 chr1 37119028 37119184 -205545169 + AluJo SINE Alu 111 300 -12 2407 90 7 0 chr1 37119481 37119780 -205544573 + AluSx SINE Alu 1 301 -11 702 161 265 0 chr1 37119824 37119986 -205544367 + MER3 DNA MER1_type 5 209 0 806 186 93 89 chr1 37120199 37120435 -205543918 + MIR SINE MIR 26 262 0 559 230 14 36 chr1 37120465 37120498 -205543855 + MIR SINE MIR 117 149 -113 2218 118 6 19 chr1 37120498 37120811 -205543542 + AluSg SINE Alu 2 310 0 559 230 14 36 chr1 37120811 37120916 -205543437 + MIR SINE MIR 149 252 -10 454 272 172 11 chr1 37121001 37121181 -205543172 + MIR SINE MIR 48 256 -6 532 279 85 36 chr1 37121189 37121436 -205542917 + MIR SINE MIR 2 260 -2 228 292 92 33 chr1 37121460 37121580 -205542773 - L2 LINE L2 0 3313 3187 1086 128 12 6 chr1 37121778 37121964 -205542389 - AluJb SINE Alu 0 312 127 2392 92 0 3 chr1 37122119 37122424 -205541929 + AluSc SINE Alu 1 304 -5 2076 111 47 10 chr1 37122436 37122734 -205541619 + AluSx SINE Alu 1 309 -3 2395 85 0 28 chr1 37123052 37123370 -205540983 + AluSg1 SINE Alu 1 309 0 770 247 87 23 chr1 37123425 37123644 -205540709 + MIR SINE MIR 17 249 -13 362 268 148 21 chr1 37123775 37123814 -205540539 - MER5A DNA MER1_type -26 163 130 2175 91 30 20 chr1 37123814 37124112 -205540241 + AluSp SINE Alu 1 301 -12 362 268 148 21 chr1 37124112 37124214 -205540139 - MER5A DNA MER1_type -59 130 4 293 269 173 10 chr1 37124378 37124482 -205539871 - MER5A DNA MER1_type -1 188 68 514 335 50 32 chr1 37124509 37124730 -205539623 + MIR SINE MIR 12 236 -26 1808 186 6 37 chr1 37124806 37125002 -205539351 - 7SLRNA srpRNA srpRNA -3 317 133 2097 155 3 0 chr1 37125002 37125305 -205539048 - AluJo SINE Alu -8 304 1 1808 186 6 37 chr1 37125305 37125435 -205538918 - 7SLRNA srpRNA srpRNA -187 133 1 1581 193 50 0 chr1 37125878 37126158 -205538195 + AluJo SINE Alu 1 294 -18 552 250 151 19 chr1 37126213 37126425 -205537928 - MIR SINE MIR -18 244 5 448 212 26 9 chr1 37126469 37126582 -205537771 + L1ME3A LINE L1 6003 6117 -53 596 251 107 23 chr1 37126881 37127096 -205537257 + MIR SINE MIR 30 262 0 371 241 177 34 chr1 37127140 37127304 -205537049 + MIR SINE MIR 3 186 -67 370 289 38 102 chr1 37127749 37127984 -205536369 - MER102b DNA MER1_type -4 337 118 1401 202 39 76 chr1 37128009 37128474 -205535879 + L1MC5 LINE L1 7002 7483 -478 2449 92 10 0 chr1 37128474 37128780 -205535573 + AluY SINE Alu 1 309 -2 1401 202 39 76 chr1 37128780 37128846 -205535507 + L1MC5 LINE L1 7483 7515 -446 1317 186 109 4 chr1 37128846 37129120 -205535233 + AluJo SINE Alu 5 307 -5 302 213 103 22 chr1 37129161 37129297 -205535056 + L1MC5 LINE L1 7646 7792 -169 232 222 97 0 chr1 37129328 37129400 -205534953 + L1MC5 LINE L1 7847 7925 -36 1425 150 0 5 chr1 37129474 37129681 -205534672 - AluJb SINE Alu -20 292 87 205 176 59 39 chr1 37129983 37130034 -205534319 - L2 LINE L2 -14 3299 3248 351 0 0 0 chr1 37130042 37130081 -205534272 + (CA)n Simple_repeat Simple_repeat 2 40 0 244 270 0 32 chr1 37130108 37130171 -205534182 + L2 LINE L2 3194 3254 -59 271 247 55 0 chr1 37130193 37130266 -205534087 - MIR SINE MIR -95 167 91 1680 157 107 11 chr1 37130363 37130643 -205533710 + AluJo SINE Alu 5 311 -1 226 267 133 0 chr1 37131405 37131480 -205532873 + MIR3 SINE MIR 92 176 -32 336 250 0 0 chr1 37131482 37131578 -205532775 + A-rich Low_complexity Low_complexity 1 96 0 521 242 87 70 chr1 37132773 37133062 -205531291 + L1ME LINE L1 5514 5777 -344 2181 109 3 0 chr1 37133148 37133431 -205530922 + AluSq SINE Alu 1 284 -29 2433 73 0 7 chr1 37133842 37134145 -205530208 - AluY SINE Alu -10 301 1 245 296 99 46 chr1 37134208 37134360 -205529993 - MIR SINE MIR -56 206 47 2114 106 13 13 chr1 37134363 37134664 -205529689 + AluSx SINE Alu 1 301 -11 2272 94 3 3 chr1 37134978 37135277 -205529076 - AluSx SINE Alu -13 299 1 1140 217 118 73 chr1 37135291 37135825 -205528528 + LTR36 LTR ERV1 54 611 0 1045 202 9 5 chr1 37135826 37136039 -205528314 + MLT1D LTR MaLR 292 505 0 2111 92 21 21 chr1 37136187 37136498 -205527855 + AluSx SINE Alu 1 311 0 1323 173 71 0 chr1 37136515 37136740 -205527613 + AluJo SINE Alu 6 246 -66 730 183 15 0 chr1 37136741 37136872 -205527481 + FRAM SINE Alu 1 40 0 436 162 27 0 chr1 37136872 37136946 -205527407 + Tigger4(Zombi) DNA MER2_type 95 170 -2561 2630 111 57 5 chr1 37136949 37137390 -205526963 + Tigger4(Zombi) DNA MER2_type 2268 2731 0 2259 109 0 3 chr1 37137558 37137851 -205526502 + AluSx SINE Alu 1 292 -20 2461 99 0 3 chr1 37137853 37138167 -205526186 + AluSq SINE Alu 1 313 0 275 275 119 9 chr1 37138533 37138642 -205525711 - MLT1K LTR MaLR -464 124 4 405 253 0 0 chr1 37138820 37138899 -205525454 - L2 LINE L2 -4 3268 3190 704 158 0 0 chr1 37138915 37139016 -205525337 + FLAM_C SINE Alu 3 103 -40 828 226 0 38 chr1 37139243 37139295 -205525058 + AluJo SINE Alu 120 172 -140 2196 114 112 83 chr1 37139295 37139767 -205524586 + LTR19A LTR ERV1 1 486 0 828 226 0 38 chr1 37139767 37139900 -205524453 + AluJo SINE Alu 172 298 -14 2376 119 0 0 chr1 37139935 37140245 -205524108 + AluSx SINE Alu 1 310 -2 403 255 19 9 chr1 37140403 37140509 -205523844 - L2 LINE L2 -250 3022 2916 2305 117 0 0 chr1 37140520 37140819 -205523534 + AluSx SINE Alu 1 299 -13 385 269 65 43 chr1 37141487 37141673 -205522680 + MLT1L LTR MaLR 424 613 -2 654 274 30 0 chr1 37141674 37141838 -205522515 + MIR SINE MIR 94 262 0 2319 110 3 0 chr1 37142004 37142303 -205522050 - AluSx SINE Alu -12 300 1 2309 102 10 13 chr1 37142309 37142623 -205521730 - AluSq SINE Alu 0 313 1 220 217 0 0 chr1 37142898 37142944 -205521409 - MIR SINE MIR -216 46 1 278 224 0 0 chr1 37143035 37143093 -205521260 - MLT1I LTR MaLR 0 409 352 752 191 121 6 chr1 37143199 37143356 -205520997 - MER63A DNA MER1_type -35 175 1 299 218 6 128 chr1 37143356 37143512 -205520841 - MLT1I LTR MaLR -204 205 69 226 190 76 51 chr1 37143593 37143672 -205520681 - L2 LINE L2 -1366 1948 1868 206 302 31 31 chr1 37143731 37143827 -205520526 - MIR SINE MIR -2 260 165 1249 131 0 0 chr1 37143836 37144004 -205520349 - AluSc SINE Alu -13 296 129 307 244 11 67 chr1 37144010 37144100 -205520253 - MIR SINE MIR -106 156 72 731 250 73 32 chr1 37144124 37144438 -205519915 + MLT1I LTR MaLR 1 332 -77 2470 100 0 0 chr1 37144438 37144749 -205519604 - AluSx SINE Alu -1 311 1 731 250 73 32 chr1 37144749 37144778 -205519575 + MLT1I LTR MaLR 332 358 -51 324 74 6 6 chr1 37145333 37145390 -205518963 - Alu SINE Alu -267 41 1 2049 155 0 0 chr1 37145396 37145693 -205518660 + AluJb SINE Alu 1 297 -15 1374 209 80 25 chr1 37145693 37146091 -205518262 - MER44D DNA MER2_type -130 475 1 1531 264 35 17 chr1 37146093 37146555 -205517798 - MLT1J LTR MaLR -7 504 35 21 36 0 0 chr1 37146857 37146885 -205517468 + GC_rich Low_complexity Low_complexity 1 28 0 2830 79 21 68 chr1 37146936 37148078 -205516275 + SVA Other Other 393 868 -592 7058 65 3 41 chr1 37148091 37149083 -205515270 + SVA Other Other 433 1386 0 2170 119 3 0 chr1 37149374 37149669 -205514684 + AluSc SINE Alu 14 309 0 1974 148 0 17 chr1 37149672 37149970 -205514383 + AluSg SINE Alu 1 293 -17 503 244 37 74 chr1 37149970 37150105 -205514248 + L2 LINE L2 3141 3270 -2 648 156 230 37 chr1 37150206 37150341 -205514012 - AluJb SINE Alu -18 294 134 2400 100 7 0 chr1 37150341 37150650 -205513703 - AluSx SINE Alu -1 311 1 536 218 30 8 chr1 37151462 37151595 -205512758 - MLT1G LTR MaLR 0 590 455 771 241 6 0 chr1 37151598 37151760 -205512593 + MLT1F LTR MaLR 4 166 -376 813 127 0 108 chr1 37151761 37151919 -205512434 + AluJo SINE Alu 1 141 -171 1146 168 15 10 chr1 37151921 37152124 -205512229 + AluJo SINE Alu 98 301 -11 1595 185 92 14 chr1 37152124 37152481 -205511872 + MLT1F LTR MaLR 158 542 0 922 230 200 14 chr1 37152481 37152843 -205511510 - MLT1G LTR MaLR -131 459 60 2697 41 0 13 chr1 37153055 37153370 -205510983 - AluY SINE Alu 0 311 1 2247 111 0 10 chr1 37153370 37153668 -205510685 - AluSx SINE Alu -17 295 1 308 283 54 11 chr1 37153836 37153928 -205510425 - MIR SINE MIR -146 116 21 332 344 10 0 chr1 37154437 37154533 -205509820 - L2 LINE L2 -30 3242 3146 1220 211 11 58 chr1 37154634 37154925 -205509428 + L1ME2 LINE L1 5804 6076 -88 2202 106 3 14 chr1 37154925 37155218 -205509135 + AluSg SINE Alu 1 290 -20 1220 211 11 58 chr1 37155218 37155287 -205509066 + L1ME2 LINE L1 6076 6147 -17 2146 119 20 7 chr1 37155322 37155616 -205508737 + AluSx SINE Alu 4 301 -11 1672 197 128 51 chr1 37155616 37155753 -205508600 + MLT1F LTR MaLR 13 138 -404 2253 114 0 7 chr1 37155753 37156050 -205508303 + AluSq SINE Alu 1 295 -18 1672 197 128 51 chr1 37156050 37156404 -205507949 + MLT1F LTR MaLR 138 542 0 3115 108 5 0 chr1 37156728 37157154 -205507199 + MSTC LTR MaLR 1 428 0 625 320 26 21 chr1 37157160 37157394 -205506959 - MIR SINE MIR 0 262 28 1461 96 0 25 chr1 37157781 37157980 -205506373 + AluSg SINE Alu 1 194 -116 502 261 51 13 chr1 37157998 37158155 -205506198 + MLT1K LTR MaLR 16 178 -410 372 167 0 0 chr1 37158241 37158301 -205506052 + AluSg/q SINE Alu 191 250 -53 1298 147 0 45 chr1 37158301 37158525 -205505828 + AluSg/x SINE Alu 85 298 -14 984 230 50 87 chr1 37158749 37159106 -205505247 - L2 LINE L2 0 3313 2970 6367 127 21 21 chr1 37159109 37160078 -205504275 + LTR5 LTR ERVK 1 969 0 4421 102 29 2 chr1 37160078 37160704 -205503649 + HERVK LTR ERVK 1 643 -6600 3165 77 36 18 chr1 37160719 37161865 -205502488 + HERVK11 LTR ERVK 206 2710 -5243 * 8164 49 2 0 chr1 37161847 37162818 -205501535 + HERVK11 LTR ERVK 2912 3884 -4069 948 108 7 0 chr1 37162792 37162931 -205501422 + HERVK11 LTR ERVK 4462 4601 -3352 * 8130 64 6 1 chr1 37162929 37163967 -205500386 + HERVK11 LTR ERVK 5525 6620 -1333 1357 155 13 77 chr1 37163976 37164286 -205500067 + LTR5 LTR ERVK 680 969 0 546 120 98 198 chr1 37164303 37164560 -205499793 + L1MC4 LINE L1 7827 7995 0 1834 148 30 3 chr1 37164571 37164869 -205499484 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr1 37164871 37164893 -205499460 + AT_rich Low_complexity Low_complexity 1 22 0 288 259 0 0 chr1 37164893 37164951 -205499402 - L2 LINE L2 -342 2971 2914 1447 174 0 8 chr1 37164968 37165227 -205499126 + AluJb SINE Alu 51 307 -5 645 256 267 19 chr1 37165345 37165775 -205498578 + MLT1K LTR MaLR 16 552 -36 335 321 38 34 chr1 37165817 37165976 -205498377 - L2 LINE L2 -218 3054 2892 1427 180 33 23 chr1 37165976 37166282 -205498071 + AluJo SINE Alu 2 310 -2 335 321 38 34 chr1 37166282 37166359 -205497994 - L2 LINE L2 -380 2892 2817 799 105 6 39 chr1 37166359 37166540 -205497813 + (GAA)n Simple_repeat Simple_repeat 3 177 0 643 267 58 75 chr1 37166540 37166885 -205497468 - L2 LINE L2 -411 2903 2565 497 273 47 51 chr1 37166907 37167276 -205497077 + MLT1H LTR MaLR 1 410 -132 1387 195 152 40 chr1 37167276 37167396 -205496957 - MLT1A1 LTR MaLR 0 365 260 1777 136 25 0 chr1 37167396 37167552 -205496801 - AluJb SINE Alu -19 293 125 207 0 0 0 chr1 37167552 37167575 -205496778 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1777 136 25 0 chr1 37167575 37167704 -205496649 - AluJb SINE Alu -187 125 1 1387 195 152 40 chr1 37167704 37167911 -205496442 - MLT1A1 LTR MaLR -105 260 1 698 274 10 10 chr1 37167911 37168112 -205496241 - MIR SINE MIR -60 202 2 1533 124 8 39 chr1 37168741 37168999 -205495354 + AluSx SINE Alu 40 289 -23 610 285 58 29 chr1 37169019 37169226 -205495127 - MIR SINE MIR -31 231 19 261 105 0 0 chr1 37169250 37169288 -205495065 - L1MA1 LINE L1 -4 6298 6261 1038 149 10 62 chr1 37169453 37169528 -205494825 + MER5A DNA MER1_type 2 79 -110 2336 93 0 3 chr1 37169528 37169839 -205494514 + AluSq SINE Alu 1 310 -3 1038 149 10 62 chr1 37169839 37169958 -205494395 + MER5A DNA MER1_type 79 186 -3 720 201 30 0 chr1 37170502 37170636 -205493717 + MIR SINE MIR 47 184 -78 471 213 66 33 chr1 37170661 37170783 -205493570 + MIR SINE MIR 68 193 -69 2136 116 10 10 chr1 37170784 37171095 -205493258 - AluSx SINE Alu -1 311 1 2053 90 52 0 chr1 37171109 37171399 -205492954 - AluSx SINE Alu -7 305 1 669 304 72 10 chr1 37171793 37172000 -205492353 + MIR SINE MIR 37 256 -6 1634 179 128 3 chr1 37172055 37172407 -205491946 - MSTD LTR MaLR 0 396 1 2023 130 0 3 chr1 37172422 37172722 -205491631 - AluSx SINE Alu -11 301 3 377 215 87 87 chr1 37172759 37172931 -205491422 + MLT1J LTR MaLR 12 183 -328 2101 170 36 45 chr1 37172937 37173407 -205490946 + MLT1C LTR MaLR 1 466 -1 574 294 73 0 chr1 37173762 37173939 -205490414 + MIR SINE MIR 2 191 -71 228 273 146 27 chr1 37174082 37174192 -205490161 - L2 LINE L2 0 3272 3150 2143 66 42 10 chr1 37174253 37174541 -205489812 - AluY SINE Alu -14 297 1 239 231 62 133 chr1 37174706 37174901 -205489452 - MIR3 SINE MIR -4 204 24 1967 152 0 0 chr1 37175009 37175312 -205489041 + AluJb SINE Alu 3 305 -7 2001 96 4 0 chr1 37175498 37175768 -205488585 + AluSq SINE Alu 1 271 -42 271 225 79 34 chr1 37176136 37176225 -205488128 - L2 LINE L2 -214 3058 2966 298 205 197 16 chr1 37177250 37177372 -205486981 - MIR3 SINE MIR -36 172 29 256 286 165 0 chr1 37177491 37177582 -205486771 - MIR3 SINE MIR -3 205 100 195 306 159 13 chr1 37178097 37178254 -205486099 + L2 LINE L2 2356 2535 -779 233 324 171 21 chr1 37178539 37178866 -205485487 + L2 LINE L2 2933 3308 -5 2001 114 0 10 chr1 37180189 37180487 -205483866 - AluSx SINE Alu -11 301 7 241 225 70 42 chr1 37180521 37180592 -205483761 - L2 LINE L2 -6 3307 3235 1292 262 65 16 chr1 37180703 37181089 -205483264 - L2 LINE L2 0 3313 2909 355 307 0 0 chr1 37181718 37181819 -205482534 - MIR SINE MIR -14 248 148 292 314 88 46 chr1 37182356 37182595 -205481758 + L2 LINE L2 1685 1933 -1381 2382 70 3 0 chr1 37182728 37183026 -205481327 - AluSp SINE Alu -14 299 1 2111 107 0 3 chr1 37183039 37183329 -205481024 - AluSg SINE Alu -21 289 1 521 301 198 47 chr1 37183599 37184640 -205479713 + L2 LINE L2 2090 3295 -18 612 276 191 5 chr1 37184671 37184881 -205479472 + MIR SINE MIR 2 250 -12 21 0 0 0 chr1 37184888 37184909 -205479444 + AT_rich Low_complexity Low_complexity 1 21 0 819 145 0 15 chr1 37184909 37185040 -205479313 + FLAM_C SINE Alu 1 129 -14 23 0 0 0 chr1 37185040 37185063 -205479290 + AT_rich Low_complexity Low_complexity 1 23 0 397 311 122 0 chr1 37185220 37185384 -205478969 + MIR SINE MIR 23 206 -56 403 272 149 56 chr1 37185512 37185658 -205478695 + MIR SINE MIR 36 206 -56 1069 214 37 0 chr1 37185658 37185873 -205478480 + MER58A DNA MER1_type 2 224 0 403 272 149 56 chr1 37185873 37185921 -205478432 + MIR SINE MIR 206 248 -14 4464 96 25 36 chr1 37186166 37186845 -205477508 - L1MA8 LINE L1 -3 6288 5616 1938 134 0 0 chr1 37186845 37187129 -205477224 - AluSx SINE Alu -24 288 5 4464 96 25 36 chr1 37187129 37187177 -205477176 - L1MA8 LINE L1 -675 5616 5569 550 209 17 191 chr1 37187230 37187460 -205476893 - MER91B DNA MER1_type 0 190 1 211 191 0 56 chr1 37187841 37187930 -205476423 + (GGCTG)n Simple_repeat Simple_repeat 2 85 0 283 316 160 11 chr1 37188156 37188343 -205476010 - L2 LINE L2 -218 3054 2840 1901 156 6 13 chr1 37189312 37189626 -205474727 - AluJo SINE Alu 0 312 1 362 278 150 9 chr1 37189707 37189901 -205474452 - MIR SINE MIR -12 250 34 266 377 0 0 chr1 37189926 37190040 -205474313 + MIR SINE MIR 32 145 -63 224 246 0 72 chr1 37190448 37190517 -205473836 - MIR SINE MIR -110 152 89 382 220 106 38 chr1 37190994 37191224 -205473129 + HAL1b LINE L1 1232 1338 -10 2877 121 2 46 chr1 37191224 37191439 -205472914 - Tigger2a DNA MER2_type -2274 434 248 2118 116 0 0 chr1 37191439 37191731 -205472622 - AluSx SINE Alu -20 292 1 2877 121 2 46 chr1 37191731 37191969 -205472384 - Tigger2a DNA MER2_type -2460 248 1 382 220 106 38 chr1 37191969 37191980 -205472373 + HAL1b LINE L1 1338 1347 -1 437 244 92 43 chr1 37192684 37192848 -205471505 - MIR SINE MIR -83 179 8 428 262 19 9 chr1 37192900 37193007 -205471346 - MIR SINE MIR -119 143 36 308 330 0 11 chr1 37193283 37193374 -205470979 + MIR SINE MIR 38 127 -81 285 216 167 10 chr1 37193968 37194070 -205470283 - L1ME4a LINE L1 -188 5933 5816 2013 126 0 3 chr1 37194364 37194658 -205469695 - AluSx SINE Alu -19 293 1 2106 129 3 0 chr1 37195633 37195944 -205468409 + AluSx SINE Alu 1 312 0 225 0 0 0 chr1 37196158 37196183 -205468170 + (TG)n Simple_repeat Simple_repeat 1 25 0 407 200 52 161 chr1 37196250 37196463 -205467890 - L1MC5 LINE L1 -227 7734 7500 2108 113 0 0 chr1 37196463 37196754 -205467599 - AluSx SINE Alu -20 292 2 407 200 52 161 chr1 37196754 37196799 -205467554 - L1MC5 LINE L1 -461 7500 7452 727 211 0 0 chr1 37196799 37196932 -205467421 - FLAM_C SINE Alu 0 133 1 407 200 52 161 chr1 37196932 37197133 -205467220 - L1MC5 LINE L1 -509 7452 7324 22 35 0 0 chr1 37197334 37197363 -205466990 + AT_rich Low_complexity Low_complexity 1 29 0 1307 280 88 10 chr1 37197396 37197882 -205466471 - L1ME2 LINE L1 -272 5892 5369 2333 275 105 19 chr1 37197924 37199350 -205465003 + L2 LINE L2 1756 3309 -4 218 291 173 27 chr1 37199368 37199478 -205464875 + L2 LINE L2 3143 3268 -4 2167 108 0 0 chr1 37199479 37199776 -205464577 - AluSx SINE Alu -15 297 1 372 232 84 70 chr1 37200132 37200274 -205464079 - L1ME4a LINE L1 -11 6110 5967 204 40 0 0 chr1 37200286 37200311 -205464042 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 1287 181 68 19 chr1 37200314 37200580 -205463773 - AluJb SINE Alu -33 279 1 2017 131 64 22 chr1 37200977 37201337 -205463016 - THE1C LTR MaLR 0 375 1 8972 149 54 24 chr1 37201620 37202598 -205461755 + L1 LINE L1 3242 4190 -1956 1840 143 11 0 chr1 37202598 37202878 -205461475 + AluSx SINE Alu 1 283 -29 8972 149 54 24 chr1 37202878 37202892 -205461461 + L1 LINE L1 4190 4202 -1944 2029 129 7 0 chr1 37202892 37203202 -205461151 + AluSx SINE Alu 1 312 0 8972 149 54 24 chr1 37203202 37203926 -205460427 + L1 LINE L1 4202 5009 -1137 2130 115 0 0 chr1 37203936 37204232 -205460121 - AluSx SINE Alu -12 300 5 4007 124 44 15 chr1 37204232 37204910 -205459443 - L1MC1 LINE L1 -440 5893 5186 2123 116 0 13 chr1 37204910 37205220 -205459133 - AluSx SINE Alu -4 308 3 4007 124 44 15 chr1 37205220 37205309 -205459044 - L1MC1 LINE L1 -1147 5186 5101 592 260 68 7 chr1 37205322 37205468 -205458885 + L2 LINE L2 3112 3266 -47 1426 248 144 54 chr1 37205580 37206370 -205457983 + L1MEd LINE L1 285 1145 -4974 262 167 10 128 chr1 37206374 37206476 -205457877 - LTR50 LTR ERVL -17 771 667 434 305 17 0 chr1 37206747 37206865 -205457488 + MIR3 SINE MIR 68 187 -21 2094 92 20 10 chr1 37207201 37207496 -205456857 - AluSg SINE Alu -12 298 1 824 288 90 22 chr1 37207543 37208016 -205456337 + L1ME3A LINE L1 5290 5809 -353 271 256 22 80 chr1 37208147 37208284 -205456069 + L1ME3A LINE L1 5965 6093 -77 1752 131 34 17 chr1 37208564 37208861 -205455492 - AluY SINE Alu -9 302 1 562 227 0 93 chr1 37209190 37209340 -205455013 + MIR3 SINE MIR 21 156 -52 326 221 18 71 chr1 37209569 37209682 -205454671 - L1 LINE L1 -2371 3775 3669 1447 118 14 9 chr1 37209710 37209930 -205454423 - AluSg/x SINE Alu -7 305 85 2561 55 0 0 chr1 37209935 37210246 -205454107 - AluY SINE Alu 0 311 1 2071 93 48 0 chr1 37210246 37210536 -205453817 - AluSq SINE Alu -9 304 1 350 166 74 58 chr1 37210706 37210809 -205453544 + MIR SINE MIR 71 172 -63 2150 122 7 0 chr1 37211016 37211304 -205453049 + AluSx SINE Alu 1 290 -22 628 193 0 36 chr1 37211673 37211813 -205452540 + L2 LINE L2 3179 3313 0 449 313 139 51 chr1 37212124 37212533 -205451820 - L2 LINE L2 0 3272 2828 246 245 118 10 chr1 37212690 37212792 -205451561 + MIR SINE MIR 68 180 -82 1042 217 10 5 chr1 37213117 37213324 -205451029 - MIR SINE MIR -25 237 30 347 287 143 26 chr1 37214087 37214317 -205450036 - L2 LINE L2 -457 2857 2601 226 353 0 49 chr1 37214330 37214432 -205449921 + MIR SINE MIR 109 205 -57 195 250 104 0 chr1 37214531 37214579 -205449774 - MIR SINE MIR -145 117 65 206 276 40 0 chr1 37214911 37214987 -205449366 - L2 LINE L2 -601 2713 2635 613 291 62 26 chr1 37215213 37215440 -205448913 + MIR SINE MIR 22 256 -6 923 154 150 59 chr1 37216824 37216877 -205447476 - L1MB7 LINE L1 -20 6164 6117 2193 98 6 50 chr1 37216877 37217194 -205447159 + AluSx SINE Alu 3 305 -7 923 154 150 59 chr1 37217194 37217360 -205446993 - L1MB7 LINE L1 -67 6117 5925 959 246 188 34 chr1 37218530 37219042 -205445311 + L2 LINE L2 2741 3313 0 372 257 20 0 chr1 37219075 37219176 -205445177 + MIR SINE MIR 103 205 -57 2268 118 0 13 chr1 37219176 37219310 -205445043 + AluSg SINE Alu 1 135 -175 2145 127 7 3 chr1 37219310 37219610 -205444743 + AluSg SINE Alu 1 301 -9 2268 118 0 13 chr1 37219610 37219788 -205444565 + AluSg SINE Alu 135 309 -1 4206 44 0 0 chr1 37220117 37220640 -205443713 - L1PA5 LINE L1 -3 6151 5629 254 365 106 14 chr1 37220983 37221191 -205443162 + L2 LINE L2 2847 3073 -240 252 0 0 0 chr1 37221327 37221355 -205442998 + (TTTCC)n Simple_repeat Simple_repeat 5 32 0 681 228 160 49 chr1 37221379 37221473 -205442880 + L2 LINE L2 2973 3055 -258 823 148 0 15 chr1 37221473 37221608 -205442745 + FLAM_C SINE Alu 1 133 0 681 228 160 49 chr1 37221608 37221820 -205442533 + L2 LINE L2 3055 3313 0 233 349 75 9 chr1 37221996 37222102 -205442251 + L2 LINE L2 3155 3267 -5 956 161 21 5 chr1 37222357 37222543 -205441810 - MER53 DNA DNA 0 189 1 689 238 62 70 chr1 37223500 37223675 -205440678 + MIR SINE MIR 18 192 -70 1837 145 0 42 chr1 37223675 37223985 -205440368 + AluJb SINE Alu 1 297 -15 689 238 62 70 chr1 37223985 37224053 -205440300 + MIR SINE MIR 192 259 -3 196 292 100 39 chr1 37224057 37224187 -205440166 - MIR3 SINE MIR -68 140 3 243 229 14 43 chr1 37224407 37224477 -205439876 - L2 LINE L2 -943 2371 2304 189 297 0 99 chr1 37224597 37224688 -205439665 - L2 LINE L2 -258 3014 2933 2966 147 24 19 chr1 37224782 37225354 -205438999 + LTR51 LTR ERV1 2 671 0 2244 116 3 0 chr1 37225451 37225752 -205438601 - AluSq SINE Alu -11 302 1 1827 223 59 32 chr1 37225797 37226347 -205438006 + MLT1F1 LTR MaLR 1 567 0 324 252 151 17 chr1 37226831 37226950 -205437403 - L2 LINE L2 -3 3310 3176 780 192 19 83 chr1 37227002 37227268 -205437085 + MER33 DNA MER1_type 1 249 -75 264 194 0 69 chr1 37227334 37227406 -205436947 + MER33 DNA MER1_type 297 363 0 862 243 9 26 chr1 37227851 37228077 -205436276 - MER58A DNA MER1_type -1 223 2 369 303 126 44 chr1 37228077 37228371 -205435982 + L2 LINE L2 2954 3271 -1 213 365 152 0 chr1 37229518 37229663 -205434690 - MIR SINE MIR -48 214 48 197 314 0 0 chr1 37229757 37229808 -205434545 + MIR SINE MIR 212 262 0 558 255 32 13 chr1 37229820 37229977 -205434376 - MIR SINE MIR -62 200 41 244 295 289 18 chr1 37230091 37230257 -205434096 + L3 LINE CR1 1259 1469 -108 2033 89 21 18 chr1 37230600 37230913 -205433440 + AluSx SINE Alu 3 316 0 246 257 135 47 chr1 37231180 37231328 -205433025 + L2 LINE L2 2898 3058 -214 827 177 21 0 chr1 37231707 37231944 -205432409 + CT-rich Low_complexity Low_complexity 1 242 0 2048 141 13 3 chr1 37231958 37232263 -205432090 - AluSx SINE Alu -4 308 1 2433 92 3 0 chr1 37232311 37232614 -205431739 + AluSg SINE Alu 1 304 -6 398 304 44 6 chr1 37232656 37232814 -205431539 + MIR SINE MIR 35 198 -64 * 546 221 104 12 chr1 37232809 37232972 -205431381 + MIR SINE MIR 15 192 -70 315 304 18 27 chr1 37233110 37233222 -205431131 - MIR3 SINE MIR -14 194 84 470 133 67 153 chr1 37233956 37233975 -205430378 + L1ME4a LINE L1 5960 5979 -142 1022 164 198 57 chr1 37233975 37234238 -205430115 + AluJo SINE Alu 3 302 0 470 133 67 153 chr1 37234238 37234368 -205429985 + L1ME4a LINE L1 5979 6096 -25 258 280 51 34 chr1 37235770 37235888 -205428465 - MIR SINE MIR -59 149 30 221 236 181 24 chr1 37236552 37236679 -205427674 + MIR3 SINE MIR 21 167 -41 357 250 213 0 chr1 37236965 37237101 -205427252 + MIR3 SINE MIR 31 195 -13 742 77 10 0 chr1 37237342 37237446 -205426907 + L1PA10 LINE L1 6061 6165 -3 291 281 22 82 chr1 37238050 37238185 -205426168 - MIR3 SINE MIR 0 208 82 229 301 63 28 chr1 37238371 37238538 -205425815 + MIR SINE MIR 5 192 -70 2718 176 39 7 chr1 37239411 37239726 -205424627 + LTR64 LTR ERVK 1 342 -216 2370 65 10 7 chr1 37239726 37240019 -205424334 - AluSp SINE Alu -17 296 3 2718 176 39 7 chr1 37240019 37240244 -205424109 + LTR64 LTR ERVK 342 558 0 429 304 62 6 chr1 37240515 37240676 -205423677 - MIR SINE MIR -80 182 13 361 294 31 55 chr1 37240783 37240946 -205423407 + MIR SINE MIR 68 226 -36 389 359 145 15 chr1 37241456 37241849 -205422504 + LTR67 LTR ERVL 114 557 0 322 319 140 0 chr1 37242556 37242713 -205421640 - MIR3 SINE MIR -7 201 23 358 170 140 20 chr1 37243412 37243512 -205420841 + MIR3 SINE MIR 70 181 -27 243 267 163 0 chr1 37243525 37243611 -205420742 + L2 LINE L2 3168 3267 -5 214 224 0 0 chr1 37243624 37243673 -205420680 - MIR3 SINE MIR -6 202 154 1765 214 121 65 chr1 37243676 37244394 -205419959 + MER20B DNA MER1_type 23 780 -3 480 288 33 0 chr1 37244399 37244552 -205419801 - MIR3 SINE MIR -49 159 2 2173 130 0 3 chr1 37244731 37245031 -205419322 - AluSx SINE Alu -7 305 7 1916 167 0 0 chr1 37245057 37245338 -205419015 - AluJo SINE Alu -31 281 1 272 306 20 61 chr1 37245360 37245507 -205418846 + L2 LINE L2 3099 3239 -33 265 229 56 108 chr1 37247631 37247824 -205416529 - MIR SINE MIR -50 212 20 2520 81 0 3 chr1 37247867 37248175 -205416178 + AluSp SINE Alu 1 307 -6 472 284 91 25 chr1 37248209 37248406 -205415947 - MIR SINE MIR 0 262 53 1120 181 9 18 chr1 37248973 37249194 -205415159 + MER20 DNA MER1_type 1 219 0 287 265 57 11 chr1 37249244 37249332 -205415021 - MIR SINE MIR -55 153 76 212 286 18 0 chr1 37249330 37249386 -205414967 - L2 LINE L2 -1 3312 3256 * 561 286 169 19 chr1 37249444 37249710 -205414643 - L2 LINE L2 -49 3223 2918 377 121 0 0 chr1 37249748 37249815 -205414538 + Alu SINE Alu 1 53 -247 2399 86 0 0 chr1 37250101 37250393 -205413960 + AluSg SINE Alu 1 292 -18 2349 62 0 0 chr1 37250395 37250671 -205413682 + AluY SINE Alu 1 276 -35 2310 101 3 3 chr1 37251379 37251686 -205412667 + AluSx SINE Alu 1 307 -5 2280 76 0 63 chr1 37251688 37252003 -205412350 + AluSg SINE Alu 1 295 -15 2401 99 0 3 chr1 37252270 37252574 -205411779 + AluSq SINE Alu 1 303 -10 2412 73 39 25 chr1 37252574 37252909 -205411444 + MER4D LTR ERV1 511 853 -19 2085 145 0 3 chr1 37252909 37253205 -205411148 - AluSx SINE Alu -17 295 1 2412 73 39 25 chr1 37253205 37253226 -205411127 + MER4D LTR ERV1 853 872 0 348 309 233 37 chr1 37253239 37253977 -205410376 + L2 LINE L2 1753 2676 -638 2116 141 3 0 chr1 37253977 37254275 -205410078 - AluSx SINE Alu -13 299 1 348 309 233 37 chr1 37254275 37254374 -205409979 + L2 LINE L2 2676 2754 -560 1504 185 23 0 chr1 37254659 37254961 -205409392 + L1MB7 LINE L1 5728 6036 -148 2600 55 0 0 chr1 37254979 37255287 -205409066 + AluY SINE Alu 1 308 -3 365 261 42 34 chr1 37255413 37255532 -205408821 - L2 LINE L2 0 3313 3194 638 233 0 63 chr1 37255882 37256041 -205408312 - FRAM SINE Alu -17 149 1 2331 123 0 0 chr1 37256046 37256356 -205407997 - AluSg SINE Alu 0 310 1 472 91 26 0 chr1 37256358 37256435 -205407918 - Tigger1 DNA MER2_type -727 1691 1613 1622 71 5 0 chr1 37256436 37256634 -205407719 - AluSp SINE Alu -1 312 114 10152 50 8 107 chr1 37256736 37258248 -205406105 + SVA Other Other 20 1382 -4 9967 103 18 29 chr1 37258248 37258555 -205405798 + Tigger1 DNA MER2_type 872 1181 -1237 2063 109 0 67 chr1 37258555 37258709 -205405644 + AluSx SINE Alu 1 125 -187 2210 104 13 3 chr1 37258709 37259008 -205405345 + AluSg SINE Alu 1 302 -8 2063 109 0 67 chr1 37259008 37259165 -205405188 + AluSx SINE Alu 125 291 -21 9967 103 18 29 chr1 37259165 37259740 -205404613 + Tigger1 DNA MER2_type 1181 1761 -657 2880 16 0 0 chr1 37259740 37260051 -205404302 + AluYa5 SINE Alu 1 311 0 9967 103 18 29 chr1 37260051 37260732 -205403621 + Tigger1 DNA MER2_type 1761 2418 0 2057 148 0 0 chr1 37261117 37261414 -205402939 + AluY SINE Alu 4 300 -11 2232 116 0 0 chr1 37261434 37261735 -205402618 - AluSx SINE Alu -11 301 1 1045 273 134 31 chr1 37261757 37262144 -205402209 - L1MEc LINE L1 -4574 2548 2203 1702 178 24 10 chr1 37262144 37262442 -205401911 - AluJb SINE Alu -10 302 1 1045 273 134 31 chr1 37262442 37262835 -205401518 - L1MEc LINE L1 -4919 2203 1687 2300 74 35 0 chr1 37262873 37263194 -205401159 - AluY SINE Alu 0 311 1 260 301 0 0 chr1 37263198 37263291 -205401062 - L1MEc LINE L1 -4955 1468 1376 2156 122 0 10 chr1 37263989 37264283 -205400070 - AluSg SINE Alu -19 291 1 729 181 90 57 chr1 37264348 37264474 -205399879 + MER58C DNA MER1_type 33 168 -2252 2348 91 0 7 chr1 37264474 37264771 -205399582 - AluSc SINE Alu -14 295 1 729 181 90 57 chr1 37264771 37264821 -205399532 + MER58C DNA MER1_type 168 215 0 2048 141 13 0 chr1 37265601 37265907 -205398446 - AluSx SINE Alu -2 310 1 252 297 203 25 chr1 37268273 37268475 -205395878 - L2 LINE L2 -31 3241 3004 304 303 96 32 chr1 37268648 37268836 -205395517 + L2 LINE L2 2974 3173 -140 699 99 9 9 chr1 37268960 37269063 -205395290 - L1MB7 LINE L1 -15 6169 6064 2712 40 0 3 chr1 37269063 37269367 -205394986 - AluSx SINE Alu -9 303 1 1858 181 121 110 chr1 37269409 37269589 -205394764 - L1MB7 LINE L1 -743 5403 5226 2542 69 0 3 chr1 37269589 37269894 -205394459 + AluY SINE Alu 1 304 -7 1858 181 121 110 chr1 37269894 37270166 -205394187 - L1MB7 LINE L1 -920 5226 4958 2394 91 3 0 chr1 37270166 37270463 -205393890 + AluSp SINE Alu 9 306 -7 1858 181 121 110 chr1 37270463 37270633 -205393720 - L1MB7 LINE L1 -1188 4958 4791 1744 160 29 14 chr1 37270633 37270914 -205393439 + AluJb SINE Alu 21 305 -7 276 30 0 0 chr1 37270915 37270948 -205393405 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 306 0 0 0 chr1 37270947 37270981 -205393372 + (CA)n Simple_repeat Simple_repeat 2 35 0 1858 181 121 110 chr1 37270948 37271306 -205393047 - L1MB7 LINE L1 -1355 4791 4514 1965 153 0 7 chr1 37271306 37271607 -205392746 - AluSx SINE Alu -13 299 1 1858 181 121 110 chr1 37271607 37271862 -205392491 - L1MB7 LINE L1 -1632 4514 4263 275 64 0 0 chr1 37272037 37272084 -205392269 + AluSp/q SINE Alu 257 303 0 1991 199 42 58 chr1 37272100 37272558 -205391795 - L1ME1 LINE L1 -132 6034 5585 2504 59 23 0 chr1 37272558 37272862 -205391491 + AluY SINE Alu 1 311 0 1991 199 42 58 chr1 37272862 37272976 -205391377 - L1ME1 LINE L1 -581 5585 5471 2602 140 26 84 chr1 37272990 37273059 -205391294 - L1MB3 LINE L1 -2 6181 6110 2468 87 0 0 chr1 37273059 37273357 -205390996 + AluSq SINE Alu 1 298 -15 2602 140 26 84 chr1 37273357 37273458 -205390895 - L1MB3 LINE L1 -73 6110 6005 657 231 8 8 chr1 37273458 37273588 -205390765 - FLAM_A SINE Alu 0 133 4 2602 140 26 84 chr1 37273588 37274022 -205390331 - L1MB3 LINE L1 -178 6005 5611 1394 204 74 11 chr1 37274022 37274306 -205390047 - AluJo SINE Alu -8 304 3 1033 193 27 31 chr1 37274310 37274533 -205389820 - AluJo SINE Alu -6 306 85 2013 149 10 0 chr1 37274634 37274930 -205389423 + AluJo SINE Alu 8 306 -6 267 191 0 0 chr1 37275329 37275392 -205388961 + A-rich Low_complexity Low_complexity 1 63 0 200 329 195 18 chr1 37275893 37276273 -205388080 + L2 LINE L2 2531 2977 -337 1961 131 21 0 chr1 37276383 37276666 -205387687 - AluSx SINE Alu -9 303 15 241 231 77 0 chr1 37277329 37277394 -205386959 + MIR SINE MIR 39 108 -100 332 330 32 38 chr1 37277412 37277597 -205386756 + MER5A DNA MER1_type 3 186 -3 439 248 48 48 chr1 37277427 37277572 -205386781 - MER5B DNA MER1_type -3 175 31 620 319 86 52 chr1 37277592 37277999 -205386354 - L3 LINE CR1 -44 1533 1113 1697 173 38 3 chr1 37278140 37278429 -205385924 + AluJo SINE Alu 1 299 -13 2215 123 10 0 chr1 37278461 37278762 -205385591 + AluSg SINE Alu 1 304 -6 2265 109 0 0 chr1 37279014 37279308 -205385045 + AluY SINE Alu 1 294 -17 180 0 0 0 chr1 37279311 37279331 -205385022 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 306 299 150 17 chr1 37279755 37279956 -205384397 - MIR SINE MIR -13 249 16 2545 62 0 3 chr1 37280057 37280365 -205383988 + AluY SINE Alu 1 307 -4 1877 82 0 0 chr1 37280375 37280607 -205383746 + AluY SINE Alu 2 233 -78 1155 117 6 0 chr1 37280611 37280773 -205383580 + AluSg/x SINE Alu 146 308 -4 1371 142 73 4 chr1 37280773 37281033 -205383320 + L1MB7 LINE L1 5795 6072 -112 5510 175 41 10 chr1 37281033 37282071 -205382282 - HERVS71 LTR ERV1 -6507 2471 1401 478 252 0 0 chr1 37282452 37282563 -205381790 - HERVS71 LTR ERV1 -7929 1049 939 3119 88 10 42 chr1 37282663 37283010 -205381343 - MER4D LTR ERV1 -384 488 160 1546 183 35 3 chr1 37283010 37283299 -205381054 + AluJb SINE Alu 3 300 -12 3119 88 10 42 chr1 37283299 37283454 -205380899 - MER4D LTR ERV1 -712 160 2 4126 105 4 4 chr1 37283555 37284118 -205380235 - LTR6A LTR ERV1 -1 563 1 327 311 76 8 chr1 37284891 37285010 -205379343 - L2 LINE L2 -4 3268 3142 2279 111 0 0 chr1 37285199 37285497 -205378856 - AluSq SINE Alu -15 298 1 322 268 173 30 chr1 37285541 37285717 -205378636 - MIR SINE MIR -51 211 16 796 196 0 0 chr1 37285785 37285918 -205378435 + FLAM_C SINE Alu 1 133 0 2163 147 0 3 chr1 37285933 37286245 -205378108 + AluSx SINE Alu 1 311 -1 907 274 63 19 chr1 37286318 37286636 -205377717 - L2 LINE L2 -3 3310 2979 397 317 0 0 chr1 37286629 37286730 -205377623 - L2 LINE L2 -14 3299 3199 * 2207 79 68 0 chr1 37286820 37287099 -205377254 + AluSx SINE Alu 1 298 -14 1799 167 24 3 chr1 37287118 37287406 -205376947 + AluJo SINE Alu 2 295 -17 245 289 8 47 chr1 37287406 37287534 -205376819 + L1MEd LINE L1 1386 1508 -4908 1091 186 5 5 chr1 37287583 37287777 -205376576 + AluJb SINE Alu 21 214 -98 235 175 0 0 chr1 37287882 37287922 -205376431 + A-rich Low_complexity Low_complexity 3 42 0 457 286 71 86 chr1 37287965 37288008 -205376345 + L3 LINE CR1 592 634 -943 2483 64 0 3 chr1 37288008 37288303 -205376050 - AluSx SINE Alu -18 294 1 457 286 71 86 chr1 37288303 37288584 -205375769 + L3 LINE CR1 634 911 -666 330 282 179 8 chr1 37288568 37288685 -205375668 - L2 LINE L2 -9 3263 3127 * 327 222 60 43 chr1 37288725 37288842 -205375511 + L1MEd LINE L1 2000 2118 -4308 2004 131 3 33 chr1 37289167 37289472 -205374881 + AluJo SINE Alu 2 297 -15 806 182 171 6 chr1 37289529 37289705 -205374648 + MER3 DNA MER1_type 5 209 0 2249 94 3 3 chr1 37289872 37290160 -205374193 + AluSg SINE Alu 1 288 -22 904 161 0 0 chr1 37290325 37290462 -205373891 + FLAM_C SINE Alu 1 137 -6 216 323 120 30 chr1 37290467 37290576 -205373777 - MIR SINE MIR -82 126 10 1697 145 59 38 chr1 37291376 37291665 -205372688 + AluJb SINE Alu 1 295 -17 900 130 0 36 chr1 37291906 37292044 -205372309 - FLAM_C SINE Alu 0 133 1 195 252 45 12 chr1 37292496 37292583 -205371770 - MIR SINE MIR -77 131 37 236 258 97 43 chr1 37293625 37293718 -205370635 - MIR SINE MIR -162 100 3 2468 79 0 3 chr1 37294441 37294745 -205369608 + AluSq SINE Alu 1 303 -10 294 70 0 23 chr1 37294745 37294788 -205369565 - Alu SINE Alu -260 42 1 267 263 45 11 chr1 37295451 37295551 -205368802 + MIR SINE MIR 51 152 -67 217 273 0 18 chr1 37297179 37297234 -205367119 + L2 LINE L2 3217 3270 -2 190 231 231 58 chr1 37298693 37298797 -205365556 + MIR SINE MIR 20 141 -67 2160 125 0 3 chr1 37299275 37299564 -205364789 + AluSx SINE Alu 3 290 -22 2261 106 7 3 chr1 37302231 37302533 -205361820 + AluSp SINE Alu 1 303 -10 1767 129 0 4 chr1 37304103 37304351 -205360002 - AluY SINE Alu -63 248 2 339 275 124 43 chr1 37304352 37304585 -205359768 - L1ME LINE L1 -349 5772 5521 2300 82 3 17 chr1 37304590 37304884 -205359469 + AluSp SINE Alu 1 290 -23 21 57 0 0 chr1 37306175 37306210 -205358143 + AT_rich Low_complexity Low_complexity 1 35 0 337 242 39 112 chr1 37310753 37310931 -205353422 - MIR3 SINE MIR -20 188 24 450 240 37 35 chr1 37512312 37512326 -205152027 + MIR SINE MIR 25 37 -224 2165 95 24 0 chr1 37512326 37512622 -205151731 + AluSx SINE Alu 1 303 -9 450 240 37 35 chr1 37512622 37512793 -205151560 + MIR SINE MIR 37 200 -61 1181 125 0 0 chr1 37513239 37513415 -205150938 - AluSg/x SINE Alu 0 310 135 1914 111 4 14 chr1 37513445 37513724 -205150629 + AluSx SINE Alu 2 277 -35 293 111 0 0 chr1 37513724 37513769 -205150584 + Alu SINE Alu 251 295 -5 2216 113 0 0 chr1 37514017 37514319 -205150034 + AluSg SINE Alu 1 302 -8 270 263 0 12 chr1 37514657 37514737 -205149616 - MER112 DNA MER1_type -99 161 83 274 244 12 12 chr1 37514767 37514849 -205149504 - MER112 DNA MER1_type -178 82 1 1593 172 28 10 chr1 37514918 37515209 -205149144 + AluJo SINE Alu 1 296 -16 397 244 228 22 chr1 37516106 37516286 -205148067 + MIR SINE MIR 46 262 0 32 26 0 0 chr1 37516309 37516348 -205148005 + AT_rich Low_complexity Low_complexity 1 39 0 1416 171 47 8 chr1 37516512 37516770 -205147583 - AluJo SINE Alu -44 268 1 312 191 0 0 chr1 37516941 37517004 -205147349 - MARNA DNA Mariner -44 542 480 22 35 0 0 chr1 37517153 37517182 -205147171 + AT_rich Low_complexity Low_complexity 1 29 0 734 243 44 85 chr1 37517641 37517814 -205146539 + MIR SINE MIR 2 162 -100 1558 129 15 117 chr1 37517814 37518139 -205146214 - AluJo SINE Alu -6 296 5 734 243 44 85 chr1 37518139 37518237 -205146116 + MIR SINE MIR 162 262 0 1530 171 14 38 chr1 37518912 37519205 -205145148 + AluJo SINE Alu 1 286 -26 381 226 0 0 chr1 37519207 37519353 -205145000 + (TA)n Simple_repeat Simple_repeat 1 146 0 315 273 181 51 chr1 37520305 37520521 -205143832 - MIR SINE MIR -8 254 11 299 313 125 9 chr1 37520929 37521041 -205143312 - L2 LINE L2 -5 3267 3143 392 343 34 14 chr1 37521279 37521425 -205142928 + L2 LINE L2 3165 3313 0 210 239 224 0 chr1 37521848 37521915 -205142438 + L3b LINE CR1 1361 1442 -141 245 286 29 0 chr1 37523133 37523203 -205141150 + MLT1L LTR MaLR 202 273 -342 939 302 121 29 chr1 37523492 37524130 -205140223 + L2 LINE L2 2594 3269 -3 449 314 5 78 chr1 37524151 37524355 -205139998 - MIR SINE MIR -54 208 20 798 231 44 35 chr1 37525161 37525390 -205138963 + MIR SINE MIR 28 258 -4 194 298 0 0 chr1 37525407 37525454 -205138899 + MIR SINE MIR 71 117 -91 981 229 121 39 chr1 37526559 37526922 -205137431 + L2 LINE L2 2921 3313 0 633 305 27 5 chr1 37527707 37527894 -205136459 + MIR SINE MIR 32 222 -40 425 309 29 0 chr1 37528310 37528446 -205135907 + MIR SINE MIR 68 207 -55 194 235 272 49 chr1 37529202 37529283 -205135070 + L2 LINE L2 3155 3253 -19 423 313 31 47 chr1 37529389 37529581 -205134772 + L3 LINE CR1 1375 1563 -14 863 219 55 5 chr1 37529596 37529797 -205134556 - MIR SINE MIR -19 243 33 1864 115 3 17 chr1 37529835 37530186 -205134167 - AluSc SINE Alu 0 347 1 1938 121 13 3 chr1 37530528 37530826 -205133527 - AluJb SINE Alu -4 308 8 198 118 0 0 chr1 37531309 37531343 -205133010 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 227 337 48 0 chr1 37532602 37532685 -205131668 - L3b LINE CR1 -205 1378 1292 2081 102 0 3 chr1 37532687 37532992 -205131361 + AluSx SINE Alu 1 304 0 240 323 16 55 chr1 37533760 37533887 -205130466 + L2 LINE L2 2554 2675 -639 1021 283 170 41 chr1 37533911 37534515 -205129838 - L2 LINE L2 0 3313 2633 295 336 78 102 chr1 37534524 37534857 -205129496 + L2 LINE L2 2948 3272 0 182 91 30 0 chr1 37535710 37535743 -205128610 + (CA)n Simple_repeat Simple_repeat 1 34 0 410 321 12 6 chr1 37535774 37535939 -205128414 + (CATA)n Simple_repeat Simple_repeat 4 169 0 637 346 31 0 chr1 37536913 37537167 -205127186 + L2 LINE L2 2235 2496 -818 446 209 28 14 chr1 37537191 37537302 -205127051 + L1ME3A LINE L1 6035 6148 -16 29 47 0 0 chr1 37537334 37537377 -205126976 + AT_rich Low_complexity Low_complexity 1 43 0 1811 168 10 7 chr1 37538491 37538801 -205125552 + AluJb SINE Alu 1 311 -1 807 176 20 0 chr1 37538850 37539003 -205125350 - FAM SINE Alu -6 43 1 414 246 113 66 chr1 37539072 37539115 -205125238 + L1MEc LINE L1 1771 1810 -4405 1709 165 10 13 chr1 37539115 37539418 -205124935 + AluJb SINE Alu 1 302 -10 414 246 113 66 chr1 37539418 37539731 -205124622 + L1MEc LINE L1 1810 2109 -4106 10808 31 0 0 chr1 37539918 37542014 -205122339 + L1PA3 LINE L1 4095 6195 0 3085 35 3 11 chr1 37542016 37542391 -205121962 + L1PA5 LINE L1 5778 6149 -5 420 180 40 0 chr1 37542399 37542499 -205121854 + L1MEc LINE L1 2198 2301 -4095 1415 195 45 0 chr1 37542512 37542688 -205121665 - AluSx SINE Alu 0 312 117 184 0 62 31 chr1 37542688 37542720 -205121633 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1415 195 45 0 chr1 37542720 37542830 -205121523 - AluSx SINE Alu -195 117 13 2145 282 73 46 chr1 37542960 37543322 -205121031 - L1MEc LINE L1 -4973 1423 1072 1997 121 3 0 chr1 37543322 37543628 -205120725 - AluSx SINE Alu 0 307 1 2145 282 73 46 chr1 37543628 37544018 -205120335 - L1MEc LINE L1 -5324 1072 694 1839 159 0 13 chr1 37544018 37544326 -205120027 - AluSx SINE Alu -8 304 1 2145 282 73 46 chr1 37544326 37544922 -205119431 - L1MEc LINE L1 -5702 694 36 2045 110 0 13 chr1 37544954 37545262 -205119091 + AluSg SINE Alu 1 304 -6 781 250 127 8 chr1 37545281 37545541 -205118812 + L1M4 LINE L1 4803 5093 -1053 1154 65 7 7 chr1 37545580 37545733 -205118620 - AluSp SINE Alu -159 154 2 550 265 53 30 chr1 37545734 37545998 -205118355 + L1M4 LINE L1 5079 5348 -798 25 0 0 0 chr1 37547353 37547378 -205116975 + GC_rich Low_complexity Low_complexity 1 25 0 273 57 0 0 chr1 37547419 37547454 -205116899 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 221 56 0 28 chr1 37547469 37547505 -205116848 + (CGGGGG)n Simple_repeat Simple_repeat 6 40 0 22 0 0 0 chr1 37547685 37547707 -205116646 + GC_rich Low_complexity Low_complexity 1 22 0 217 216 0 0 chr1 37547818 37547869 -205116484 + C-rich Low_complexity Low_complexity 1 51 0 568 312 62 46 chr1 37548442 37548830 -205115523 + L2 LINE L2 2364 2757 -557 2024 79 75 0 chr1 37550142 37550422 -205113931 + AluY SINE Alu 1 301 -10 333 329 30 65 chr1 37550422 37550680 -205113673 + MIR SINE MIR 4 256 -6 486 221 6 23 chr1 37550750 37550902 -205113451 + MIR SINE MIR 49 262 0 3188 239 101 54 chr1 37551027 37552278 -205112075 + L2 LINE L2 1882 3169 -144 229 312 57 0 chr1 37552381 37552522 -205111831 - L1MEc LINE L1 -3815 2400 2252 435 301 49 39 chr1 37552620 37552823 -205111530 - L1MEc LINE L1 -4159 2237 2033 288 0 0 0 chr1 37552892 37552924 -205111429 + (TG)n Simple_repeat Simple_repeat 1 32 0 1890 125 0 7 chr1 37552924 37553205 -205111148 - AluSx SINE Alu -33 279 1 461 143 29 0 chr1 37553255 37553325 -205111028 - MLT1B LTR MaLR -55 335 264 713 240 23 0 chr1 37553331 37553552 -205110801 - L1M4 LINE L1 -933 5711 5486 308 288 64 8 chr1 37553967 37554092 -205110261 - L1M4 LINE L1 -6333 209 78 359 233 23 0 chr1 37554180 37554266 -205110087 - MLT1J1 LTR MaLR -4 442 355 2091 215 51 78 chr1 37554277 37554826 -205109527 - MLT1F1 LTR MaLR -8 559 1 1554 280 60 62 chr1 37554833 37555498 -205108855 - L1MEc LINE L1 -5430 775 112 210 143 39 26 chr1 37555999 37556076 -205108277 + G-rich Low_complexity Low_complexity 1 78 0 2171 98 0 0 chr1 37557943 37558230 -205106123 + AluSx SINE Alu 1 287 -25 329 330 25 0 chr1 37558247 37558365 -205105988 + L1MC5 LINE L1 7805 7925 -36 659 253 118 13 chr1 37558370 37558837 -205105516 - L1M4 LINE L1 -1455 4691 4176 339 276 29 35 chr1 37558839 37559013 -205105340 + L1M4 LINE L1 2446 2618 -3528 2155 204 55 44 chr1 37559088 37559338 -205105015 - MLT1F LTR MaLR 0 514 268 3018 122 16 46 chr1 37559338 37559839 -205104514 - MER66B LTR ERV1 0 486 1 2155 204 55 44 chr1 37559839 37560120 -205104233 - MLT1F LTR MaLR -246 268 1 780 254 88 18 chr1 37560120 37560459 -205103894 + L1M4 LINE L1 2699 3061 -3085 659 277 72 49 chr1 37560530 37560762 -205103591 + L1M4 LINE L1 2979 3204 -2942 821 169 0 22 chr1 37560762 37560898 -205103455 - FLAM_C SINE Alu 0 133 1 2203 122 0 3 chr1 37560901 37561205 -205103148 - AluSx SINE Alu -9 303 1 659 277 72 49 chr1 37561205 37561437 -205102916 + L1M4 LINE L1 3205 3458 -2688 1952 134 137 31 chr1 37561458 37561845 -205102508 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr1 37562077 37562101 -205102252 + (A)n Simple_repeat Simple_repeat 1 24 0 209 375 17 17 chr1 37562285 37562405 -205101948 - MIR SINE MIR -123 139 20 180 77 0 0 chr1 37563103 37563129 -205101224 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7341 59 4 32 chr1 37563129 37564361 -205099992 - SVA Other Other -799 1363 323 25 65 0 0 chr1 37564370 37564416 -205099937 + AT_rich Low_complexity Low_complexity 1 46 0 1576 146 96 21 chr1 37564443 37564724 -205099629 - AluJb SINE Alu -10 302 1 401 276 33 33 chr1 37564733 37565009 -205099344 - L1MEc LINE L1 -4967 1649 1181 2004 101 17 47 chr1 37565047 37565345 -205099008 + AluSx SINE Alu 1 289 -23 486 0 0 0 chr1 37565346 37565400 -205098953 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 2525 210 40 39 chr1 37565764 37565992 -205098361 + Zaphod DNA AcHobo 2695 2921 -1110 2215 153 60 14 chr1 37565992 37566405 -205097948 + MSTB1 LTR MaLR 1 432 0 2525 210 40 39 chr1 37566405 37566924 -205097429 + Zaphod DNA AcHobo 2921 3443 -588 1074 194 9 18 chr1 37566908 37567130 -205097223 + Zaphod DNA AcHobo 3785 4004 -27 * 598 248 175 43 chr1 37568960 37569023 -205095330 + L1MC4 LINE L1 5482 5535 -586 2095 109 22 29 chr1 37569023 37569334 -205095019 - AluSg1 SINE Alu 0 309 1 598 248 175 43 chr1 37569334 37569638 -205094715 + L1MC4 LINE L1 5535 5775 -346 1329 125 82 0 chr1 37569767 37569975 -205094378 - AluJb SINE Alu -4 308 84 297 282 0 0 chr1 37570692 37570763 -205093590 - L2 LINE L2 -23 3249 3179 303 28 0 0 chr1 37570964 37571000 -205093353 + (TG)n Simple_repeat Simple_repeat 2 37 0 339 265 166 11 chr1 37571087 37571268 -205093085 - L2 LINE L2 -343 2971 2763 229 355 21 0 chr1 37572654 37572747 -205091606 - L2 LINE L2 -821 2493 2399 1033 95 68 16 chr1 37572959 37573149 -205091204 + Tigger7 DNA MER2_type 2308 2507 -80 272 253 35 0 chr1 37573150 37573237 -205091116 + (TA)n Simple_repeat Simple_repeat 1 90 0 207 100 0 0 chr1 37573299 37573329 -205091024 + (TA)n Simple_repeat Simple_repeat 1 30 0 239 197 0 30 chr1 37573366 37573432 -205090921 + L1MC4 LINE L1 6640 6703 -1339 601 179 24 6 chr1 37573447 37573615 -205090738 + (TA)n Simple_repeat Simple_repeat 1 171 0 590 197 0 41 chr1 37573615 37573737 -205090616 + Tigger7 DNA MER2_type 2471 2587 0 245 98 24 0 chr1 37573806 37573847 -205090506 + MADE1 DNA Mariner 35 76 -4 22 0 0 0 chr1 37573899 37573921 -205090432 + AT_rich Low_complexity Low_complexity 1 22 0 1083 288 105 16 chr1 37573921 37574452 -205089901 + L2 LINE L2 2741 3309 -4 2434 78 0 7 chr1 37574566 37574862 -205089491 + AluY SINE Alu 1 294 -17 768 147 0 98 chr1 37574887 37575050 -205089303 + MLT1E2 LTR MaLR 1 147 -479 360 239 126 52 chr1 37575051 37575140 -205089213 - L1M4 LINE L1 -982 5164 5083 2418 97 0 3 chr1 37575140 37575450 -205088903 + AluSg SINE Alu 1 309 -1 360 239 126 52 chr1 37575450 37575590 -205088763 - L1M4 LINE L1 -1063 5083 4918 458 198 11 33 chr1 37575642 37575886 -205088467 + (TA)n Simple_repeat Simple_repeat 1 238 0 24 32 0 0 chr1 37575889 37575920 -205088433 + AT_rich Low_complexity Low_complexity 1 31 0 263 167 0 0 chr1 37576214 37576256 -205088097 - MIR SINE MIR 0 262 221 499 178 50 20 chr1 37576352 37576453 -205087900 + MLT1L LTR MaLR 132 235 -380 3005 6 0 0 chr1 37576471 37576788 -205087565 - AluYb8 SINE Alu -1 317 1 548 274 121 21 chr1 37576846 37577036 -205087317 + MLT1L LTR MaLR 349 557 -58 804 246 169 38 chr1 37577726 37578153 -205086200 + L1ME4a LINE L1 5582 6064 -57 813 192 0 0 chr1 37578539 37578669 -205085684 + MER45A DNA AcHobo 1 130 -48 2431 83 0 13 chr1 37578721 37579034 -205085319 + AluY SINE Alu 1 309 -2 30 27 0 0 chr1 37579169 37579206 -205085147 + AT_rich Low_complexity Low_complexity 1 37 0 1480 194 32 157 chr1 37579370 37580001 -205084352 + MLT1H LTR MaLR 1 542 0 612 308 92 61 chr1 37580057 37580502 -205083851 + L1MEd LINE L1 267 725 -5394 2565 161 17 14 chr1 37580524 37580946 -205083407 + MLT2B2 LTR ERVL 1 423 -92 777 168 19 71 chr1 37581191 37581346 -205083007 - AluSg/x SINE Alu -31 279 133 2264 99 3 23 chr1 37581400 37581704 -205082649 - AluSg SINE Alu -12 298 1 22 35 0 0 chr1 37582118 37582147 -205082206 + AT_rich Low_complexity Low_complexity 1 29 0 1921 163 0 7 chr1 37582698 37582992 -205081361 + AluSx SINE Alu 1 292 -20 806 169 0 0 chr1 37583358 37583488 -205080865 - FLAM_A SINE Alu 0 133 4 2325 79 14 0 chr1 37583937 37584228 -205080125 - AluSq SINE Alu -18 295 1 269 298 149 0 chr1 37584257 37584398 -205079955 - MIR SINE MIR -81 181 20 768 158 0 43 chr1 37585214 37585353 -205079000 - FLAM_C SINE Alu 0 133 1 2205 78 21 0 chr1 37585684 37585967 -205078386 + AluSg SINE Alu 1 289 -21 552 214 36 71 chr1 37585967 37586135 -205078218 - MSTD LTR MaLR -234 162 1 321 240 69 17 chr1 37586135 37586280 -205078073 - L1MEc LINE L1 -5028 1505 1202 725 167 8 0 chr1 37586309 37586429 -205077924 + AluJb SINE Alu 6 126 -186 686 98 0 0 chr1 37586436 37586528 -205077825 + L1PA14 LINE L1 6035 6126 -35 1906 114 54 17 chr1 37586768 37587065 -205077288 - AluSg SINE Alu -2 308 1 260 322 16 16 chr1 37587179 37587300 -205077053 - MER5A DNA MER1_type -68 121 1 1810 147 6 35 chr1 37588206 37588520 -205075833 - AluJo SINE Alu -7 305 1 25 31 0 0 chr1 37589723 37589755 -205074598 + AT_rich Low_complexity Low_complexity 1 32 0 1175 215 5 9 chr1 37590275 37590494 -205073859 - MER58A DNA MER1_type -6 218 1 529 248 150 67 chr1 37590707 37590875 -205073478 - L1ME2 LINE L1 -294 5870 5717 1958 148 20 3 chr1 37590875 37591173 -205073180 + AluJo SINE Alu 6 308 -4 1781 142 25 25 chr1 37591180 37591482 -205072871 + AluJb SINE Alu 1 302 0 529 248 150 67 chr1 37591482 37591873 -205072480 - L1ME2 LINE L1 -452 5712 5256 1138 251 362 18 chr1 37591876 37592303 -205072050 + L2 LINE L2 1639 1918 -1396 1428 181 75 4 chr1 37592303 37592568 -205071785 - AluJo SINE Alu -28 284 1 1138 251 362 18 chr1 37592568 37592968 -205071385 + L2 LINE L2 1918 2751 -563 333 197 128 34 chr1 37593024 37593141 -205071212 + L1M4 LINE L1 4735 4862 -1284 2021 115 3 39 chr1 37595814 37596119 -205068234 + AluSx SINE Alu 1 294 -18 1757 159 0 10 chr1 37596171 37596461 -205067892 - AluJb SINE Alu -2 310 24 412 315 50 57 chr1 37596889 37597535 -205066818 + Charlie3 DNA MER1_type 1355 2017 -693 25 65 0 0 chr1 37598152 37598198 -205066155 + AT_rich Low_complexity Low_complexity 1 46 0 2120 110 14 10 chr1 37598399 37598689 -205065664 - AluSq SINE Alu -22 291 1 1303 171 89 52 chr1 37598783 37599110 -205065243 - MER58B DNA MER1_type 0 341 3 220 172 52 17 chr1 37599326 37599384 -205064969 - L2 LINE L2 0 3272 3213 226 248 78 0 chr1 37599409 37599515 -205064838 - MIR SINE MIR -70 138 40 776 264 72 103 chr1 37601630 37601852 -205062501 - L1MEd LINE L1 -2632 3497 3270 1682 100 166 8 chr1 37601852 37602111 -205062242 - AluSg1 SINE Alu -9 300 1 776 264 72 103 chr1 37602111 37602209 -205062144 - L1MEd LINE L1 -2859 3270 3170 1523 196 16 35 chr1 37602209 37602520 -205061833 + AluJo SINE Alu 1 305 -7 776 264 72 103 chr1 37602520 37603000 -205061353 - L1MEd LINE L1 -2959 3170 2721 3010 101 90 62 chr1 37603022 37603466 -205060887 + MER1A DNA MER1_type 1 462 -2238 2480 57 7 7 chr1 37603466 37603767 -205060586 - AluY SINE Alu -6 305 5 3010 101 90 62 chr1 37603767 37603835 -205060518 + MER1A DNA MER1_type 462 527 0 701 283 68 11 chr1 37603861 37604228 -205060125 - L1MEd LINE L1 -3526 2603 2216 2100 123 7 7 chr1 37604228 37604537 -205059816 - AluSx SINE Alu -3 309 1 408 322 110 47 chr1 37605121 37605631 -205058722 - L1MEd LINE L1 -5560 559 18 677 320 41 68 chr1 37606412 37606781 -205057572 - L2 LINE L2 0 3272 2914 671 165 74 34 chr1 37607060 37607236 -205057117 + MER53 DNA DNA 7 189 0 2135 228 20 24 chr1 37608193 37608698 -205055655 - MLT1J LTR MaLR -6 505 3 351 0 0 0 chr1 37608707 37608746 -205055607 + (CCAA)n Simple_repeat Simple_repeat 4 42 0 376 198 146 0 chr1 37609020 37609116 -205055237 - MIR SINE MIR -39 223 114 406 317 56 7 chr1 37609383 37609525 -205054828 + MIR SINE MIR 104 252 -10 1491 187 142 58 chr1 37609597 37610063 -205054290 - MLT1D LTR MaLR 0 505 1 312 323 153 30 chr1 37610113 37610550 -205053803 + L2 LINE L2 1728 2218 -1096 278 337 163 0 chr1 37611209 37611485 -205052868 - L2 LINE L2 -337 2977 2657 299 267 20 0 chr1 37611546 37611647 -205052706 + (TA)n Simple_repeat Simple_repeat 2 104 0 195 228 185 54 chr1 37611652 37611744 -205052609 - MIR SINE MIR -88 120 17 246 243 14 14 chr1 37612609 37612683 -205051670 + MIR SINE MIR 13 86 -176 2343 61 54 7 chr1 37612783 37613078 -205051275 + AluSp SINE Alu 1 309 -4 180 125 0 0 chr1 37613734 37613766 -205050587 + (CCCCCG)n Simple_repeat Simple_repeat 3 34 0 203 189 19 19 chr1 37616457 37616510 -205047843 + (CCCGG)n Simple_repeat Simple_repeat 5 57 0 30 69 0 0 chr1 37616555 37616613 -205047740 + GC_rich Low_complexity Low_complexity 1 58 0 186 358 12 12 chr1 37617779 37617860 -205046493 - MIR SINE MIR -71 137 57 241 245 29 78 chr1 37618193 37618295 -205046058 - L2 LINE L2 -260 3012 2916 222 171 0 0 chr1 37618370 37618411 -205045942 - L2 LINE L2 -557 2757 2717 236 262 155 0 chr1 37618545 37618648 -205045705 + MER5A DNA MER1_type 65 183 -6 184 271 34 0 chr1 37618694 37618753 -205045600 + MIR3 SINE MIR 100 160 -48 407 297 31 8 chr1 37618758 37618886 -205045467 - MIR SINE MIR -81 181 51 1229 209 234 0 chr1 37619152 37619473 -205044880 - MSTD LTR MaLR 0 396 1 270 289 24 0 chr1 37619772 37619855 -205044498 - L2 LINE L2 -639 2675 2591 563 274 135 13 chr1 37620033 37620263 -205044090 - MIR SINE MIR -3 259 2 318 342 55 42 chr1 37620271 37620508 -205043845 + L2 LINE L2 2992 3231 -41 1699 176 140 80 chr1 37620615 37621188 -205043165 + LTR48B LTR ERV1 1 607 -37 2224 118 7 3 chr1 37621386 37621683 -205042670 + AluJb SINE Alu 1 298 -14 2254 92 27 0 chr1 37621685 37621979 -205042374 + AluSp SINE Alu 1 302 -11 490 241 92 23 chr1 37622269 37622443 -205041910 - MIR SINE MIR 0 262 77 289 288 43 58 chr1 37623577 37623716 -205040637 - L2 LINE L2 0 3272 3136 196 298 18 0 chr1 37623724 37623781 -205040572 + L2 LINE L2 3215 3272 0 478 254 74 60 chr1 37624190 37624407 -205039946 + MIR SINE MIR 20 239 -23 24 0 0 0 chr1 37624428 37624452 -205039901 + AT_rich Low_complexity Low_complexity 1 24 0 2157 115 0 29 chr1 37624470 37624817 -205039536 + MER1B DNA MER1_type 1 337 0 399 239 28 46 chr1 37625033 37625142 -205039211 + MIR SINE MIR 155 261 -1 240 35 0 0 chr1 37625289 37625318 -205039035 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1124 105 0 0 chr1 37625449 37625592 -205038761 - AluSg/x SINE Alu -14 298 156 276 83 0 0 chr1 37625592 37625628 -205038725 - Alu SINE Alu -258 45 10 2126 83 72 7 chr1 37626199 37626475 -205037878 + AluSg1 SINE Alu 1 294 -15 258 285 169 55 chr1 37627769 37627983 -205036370 - L1ME4a LINE L1 -13 6108 5920 1605 148 16 4 chr1 37627983 37628226 -205036127 - AluJb SINE Alu -23 289 44 2197 122 0 7 chr1 37628230 37628534 -205035819 - AluSx SINE Alu -9 303 2 2299 103 0 0 chr1 37628543 37628856 -205035497 - AluSg SINE Alu 0 310 1 258 285 169 55 chr1 37628856 37629134 -205035219 - L1ME4a LINE L1 -210 5911 5543 240 213 191 32 chr1 37629759 37629853 -205034500 - Charlie8 DNA MER1_type -2173 244 136 297 310 99 35 chr1 37629892 37630034 -205034319 - Charlie8 DNA MER1_type -2265 152 2 198 0 0 0 chr1 37630073 37630095 -205034258 + (T)n Simple_repeat Simple_repeat 1 22 0 631 255 93 10 chr1 37631139 37631343 -205033010 + MIR SINE MIR 2 222 -40 225 175 191 0 chr1 37631363 37631426 -205032927 - MIR SINE MIR -34 228 154 230 214 71 0 chr1 37631805 37631861 -205032492 + MIR SINE MIR 87 146 -62 2662 61 0 6 chr1 37632545 37632858 -205031495 - AluY SINE Alu 0 311 1 308 292 110 67 chr1 37633016 37633362 -205030991 + L2 LINE L2 2007 2367 -947 * 447 270 123 6 chr1 37633333 37633496 -205030857 + MIR SINE MIR 47 228 -34 338 276 163 0 chr1 37634094 37634217 -205030136 + L2 LINE L2 3129 3271 -1 632 248 124 5 chr1 37635594 37635812 -205028541 + MIR SINE MIR 18 261 -1 1808 171 26 36 chr1 37636280 37636666 -205027687 - MLT1B LTR MaLR 0 390 9 446 319 74 0 chr1 37637733 37637896 -205026457 - MIR SINE MIR -67 195 21 330 236 150 8 chr1 37638462 37638589 -205025764 + MIR SINE MIR 39 183 -79 431 310 150 18 chr1 37638823 37639097 -205025256 + L3b LINE CR1 1179 1488 -95 370 363 58 22 chr1 37639760 37639986 -205024367 + MIR SINE MIR 23 256 -6 558 292 49 5 chr1 37640402 37640587 -205023766 + MIR SINE MIR 11 203 -59 649 179 259 0 chr1 37640758 37640920 -205023433 - MER3 DNA MER1_type -5 204 1 198 302 52 52 chr1 37642144 37642260 -205022093 - MIR SINE MIR -63 145 30 701 118 8 0 chr1 37643184 37643303 -205021050 + (TTCTC)n Simple_repeat Simple_repeat 3 122 0 * 848 125 25 0 chr1 37643277 37643437 -205020916 + CT-rich Low_complexity Low_complexity 1 164 0 2194 105 20 3 chr1 37643438 37643733 -205020620 - AluSg SINE Alu -10 300 1 2331 96 3 0 chr1 37645093 37645386 -205018967 - AluSx SINE Alu -18 294 1 233 330 34 0 chr1 37645473 37645561 -205018792 - L3 LINE CR1 -48 1529 1439 201 288 12 12 chr1 37645641 37645721 -205018632 + L3 LINE CR1 836 915 -662 2178 94 0 4 chr1 37645738 37646013 -205018340 + AluSx SINE Alu 21 294 -18 218 250 40 30 chr1 37646860 37646960 -205017393 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 318 295 40 101 chr1 37646983 37647218 -205017135 + L2 LINE L2 2962 3179 -93 1748 178 0 3 chr1 37647218 37647504 -205016849 - AluJo SINE Alu -7 305 21 318 295 40 101 chr1 37647504 37647546 -205016807 + L2 LINE L2 3179 3222 -50 1022 247 63 0 chr1 37647613 37647852 -205016501 + MIR SINE MIR 5 258 -4 2283 117 7 0 chr1 37648032 37648341 -205016012 + AluSx SINE Alu 1 311 -1 1017 175 0 0 chr1 37648357 37648523 -205015830 + FRAM SINE Alu 1 166 0 1883 172 78 47 chr1 37648661 37648962 -205015391 - MLT1D LTR MaLR 0 505 182 2106 136 14 0 chr1 37648962 37649257 -205015096 - AluJb SINE Alu -13 299 1 1883 172 78 47 chr1 37649257 37649444 -205014909 - MLT1D LTR MaLR -323 182 2 423 299 16 90 chr1 37649727 37649971 -205014382 - L2 LINE L2 -93 3179 2954 266 104 0 21 chr1 37650020 37650068 -205014285 + (TG)n Simple_repeat Simple_repeat 1 47 0 203 160 40 20 chr1 37650076 37650126 -205014227 + L2 LINE L2 3217 3267 -5 366 227 49 11 chr1 37650394 37650509 -205013844 - MIR SINE MIR -67 141 23 222 171 24 0 chr1 37650877 37650918 -205013435 + MIR3 SINE MIR 119 160 -48 379 227 127 27 chr1 37650977 37651127 -205013226 - MER103 DNA DNA 0 166 2 1236 128 55 48 chr1 37651244 37651423 -205012930 - LTR45B LTR ERV1 -80 409 233 2399 85 0 0 chr1 37651423 37651716 -205012637 - AluY SINE Alu -18 293 1 1236 128 55 48 chr1 37651716 37651878 -205012475 - LTR45B LTR ERV1 -256 233 24 2214 91 52 0 chr1 37651878 37652165 -205012188 + AluSx SINE Alu 1 302 -10 250 288 206 12 chr1 37652642 37652802 -205011551 + L3 LINE CR1 1280 1470 -107 1250 291 74 12 chr1 37652924 37653329 -205011024 - MLT1H LTR MaLR -107 442 13 362 302 14 36 chr1 37653516 37653655 -205010698 - MIR SINE MIR -48 214 79 548 284 85 28 chr1 37653981 37654157 -205010196 - L2 LINE L2 -6 3307 3122 290 304 43 9 chr1 37654590 37654705 -205009648 + MER117 DNA MER1_type 55 173 -24 873 217 11 0 chr1 37654748 37654923 -205009430 - MER97b DNA MER1_type? -876 177 1 769 198 95 162 chr1 37655614 37656139 -205008214 + LTR16C LTR ERVL 2 491 0 495 307 23 46 chr1 37656305 37656523 -205007830 + MIR SINE MIR 15 227 -35 571 287 97 15 chr1 37657514 37657709 -205006644 + MIR SINE MIR 52 262 0 468 209 64 9 chr1 37657972 37658082 -205006271 - MIR SINE MIR -30 232 117 226 416 8 0 chr1 37658106 37658231 -205006122 - MIR3 SINE MIR -80 128 3 888 267 124 50 chr1 37658475 37658894 -205005459 - MLT1J2 LTR MaLR 0 450 1 306 191 48 129 chr1 37658913 37659060 -205005293 - MIR SINE MIR -4 258 124 681 180 22 0 chr1 37659060 37659199 -205005154 - L1ME1 LINE L1 -188 6047 5906 * 6810 219 99 70 chr1 37659196 37660588 -205003765 - L1ME1 LINE L1 -669 5564 4214 948 168 0 19 chr1 37660588 37660749 -205003604 - AluSg/x SINE Alu -19 290 133 6810 219 99 70 chr1 37660749 37661285 -205003068 - L1ME1 LINE L1 -2019 4214 3695 1731 203 7 0 chr1 37661285 37661580 -205002773 - AluJb SINE Alu -3 309 13 6810 219 99 70 chr1 37661580 37662681 -205001672 - L1ME1 LINE L1 -2538 3695 2120 5224 186 50 37 chr1 37662677 37663482 -205000871 - L1MD1 LINE L1 0 6636 5843 * 2130 115 0 14 chr1 37663482 37663812 -205000541 - AluSx SINE Alu 0 326 1 5224 186 50 37 chr1 37663812 37663969 -205000384 - L1MD1 LINE L1 -793 5843 5689 985 182 6 0 chr1 37663969 37664128 -205000225 - FRAM SINE Alu -6 160 1 5224 186 50 37 chr1 37664128 37664429 -204999924 - L1MD1 LINE L1 -947 5689 5393 243 0 0 0 chr1 37664429 37664456 -204999897 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5224 186 50 37 chr1 37664456 37664920 -204999433 - L1MD1 LINE L1 -1243 5393 4855 2187 123 0 0 chr1 37664920 37665221 -204999132 - AluSx SINE Alu -2 310 10 5224 186 50 37 chr1 37665221 37665375 -204998978 - L1MD1 LINE L1 -1781 4855 4704 302 205 24 12 chr1 37665361 37665444 -204998909 - L1P LINE L1 -1906 4240 4157 * 1447 157 25 138 chr1 37665440 37665874 -204998479 - L1MD1 LINE L1 -6009 531 147 4469 248 60 45 chr1 37665893 37666169 -204998184 - L1ME1 LINE L1 -4264 2132 1862 1773 183 30 0 chr1 37666169 37666469 -204997884 - AluJo SINE Alu -3 309 1 4469 248 60 45 chr1 37666469 37666691 -204997662 - L1ME1 LINE L1 -4534 1862 1645 1732 176 28 14 chr1 37666691 37667048 -204997305 - L1MB7 LINE L1 -5 6179 5818 4469 248 60 45 chr1 37667048 37667495 -204996858 - L1ME1 LINE L1 -4751 1645 1206 2566 54 0 0 chr1 37667495 37667791 -204996562 - AluY SINE Alu -9 302 7 4469 248 60 45 chr1 37667791 37668864 -204995489 - L1ME1 LINE L1 -5190 1206 81 283 220 87 116 chr1 37669087 37669260 -204995093 - MLT1H LTR MaLR -23 526 359 251 293 65 46 chr1 37669238 37669551 -204994802 - MLT1I LTR MaLR -110 299 1 * 2248 106 0 0 chr1 37669560 37669876 -204994477 - AluSx SINE Alu 0 316 1 727 281 147 92 chr1 37669907 37670206 -204994147 - L1MEd LINE L1 -5321 798 517 2187 118 3 31 chr1 37670206 37670527 -204993826 + AluSx SINE Alu 1 312 0 727 281 147 92 chr1 37670527 37670773 -204993580 - L1MEd LINE L1 -5602 517 204 2119 128 7 3 chr1 37670773 37671063 -204993290 + AluSx SINE Alu 1 291 -21 727 281 147 92 chr1 37671063 37671210 -204993143 - L1MEd LINE L1 -5915 204 67 3971 89 19 2 chr1 37671213 37671755 -204992598 - L1PA11 LINE L1 0 6174 5624 600 275 8 0 chr1 37671997 37672128 -204992225 + L2 LINE L2 3137 3268 -4 222 222 19 0 chr1 37672241 37672295 -204992058 + L3 LINE CR1 619 673 -904 366 291 24 16 chr1 37672329 37672456 -204991897 - LTR67 LTR ERVL -2 555 428 1281 189 45 126 chr1 37672483 37672880 -204991473 + MLT1A1 LTR MaLR 1 365 0 6235 190 20 64 chr1 37672880 37673145 -204991208 + MLT1A1-int LTR MaLR 1 276 -1459 1808 185 0 0 chr1 37673145 37673443 -204990910 + AluJo SINE Alu 2 299 -13 6235 190 20 64 chr1 37673443 37674597 -204989756 + MLT1A1-int LTR MaLR 276 1357 -378 991 113 0 0 chr1 37674597 37674730 -204989623 - AluSg SINE Alu -7 303 171 1281 128 0 0 chr1 37674871 37675035 -204989318 - AluSg SINE Alu -146 164 1 1817 142 77 3 chr1 37675035 37675346 -204989007 + MLT1A1-int LTR MaLR 1351 1684 -51 357 96 0 0 chr1 37675351 37675403 -204988950 + MADE1 DNA Mariner 1 52 -28 299 106 21 0 chr1 37675403 37675450 -204988903 + MLT1A1-int LTR MaLR 1688 1735 0 1224 156 45 159 chr1 37675450 37675872 -204988481 + MLT1A2 LTR MaLR 1 374 0 2247 112 0 0 chr1 37676792 37677079 -204987274 - AluSx SINE Alu -25 287 1 366 364 24 34 chr1 37677886 37678095 -204986258 + L3 LINE CR1 718 924 -653 1883 218 107 52 chr1 37678467 37679221 -204985132 - HAL1 LINE L1 -909 1598 803 1352 121 5 15 chr1 37679225 37679431 -204984922 + L1MC1 LINE L1 6113 6316 -17 607 304 15 0 chr1 37679545 37679746 -204984607 - HAL1 LINE L1 -1696 811 608 1864 141 3 7 chr1 37679808 37680092 -204984261 + AluJo SINE Alu 2 284 -28 672 48 0 0 chr1 37680092 37680176 -204984177 + (CCGAA)n Simple_repeat Simple_repeat 4 87 0 302 288 141 60 chr1 37680181 37680365 -204983988 + L1ME4a LINE L1 4735 4933 -1213 21 0 0 0 chr1 37680478 37680499 -204983854 + AT_rich Low_complexity Low_complexity 1 21 0 394 316 140 16 chr1 37680573 37680766 -204983587 + L1ME4a LINE L1 5176 5392 -754 1890 152 0 4 chr1 37680777 37681053 -204983300 + AluJb SINE Alu 1 275 -37 273 298 24 0 chr1 37681199 37681283 -204983070 + L1ME4a LINE L1 5512 5597 -524 455 305 51 23 chr1 37681295 37681472 -204982881 + L2 LINE L2 2902 3083 -189 488 278 32 0 chr1 37681499 37681625 -204982728 - HAL1 LINE L1 -1889 618 489 417 38 0 0 chr1 37681627 37681680 -204982673 - AluSx SINE Alu -13 299 247 1224 111 23 0 chr1 37681680 37681852 -204982501 - AluSx SINE Alu -136 176 1 484 257 117 11 chr1 37681858 37682037 -204982316 - HAL1 LINE L1 -2031 476 279 725 235 145 39 chr1 37682118 37682505 -204981848 + L1ME4a LINE L1 5599 6026 -95 236 292 159 53 chr1 37682584 37682718 -204981635 + L3 LINE CR1 966 1084 -493 2489 97 0 0 chr1 37682718 37683028 -204981325 + AluSx SINE Alu 1 310 -2 236 292 159 53 chr1 37683028 37683119 -204981234 + L3 LINE CR1 1084 1215 -362 408 222 92 59 chr1 37683703 37683856 -204980497 - MIR3 SINE MIR -49 159 2 2564 153 44 11 chr1 37684052 37684504 -204979849 + MLT1C LTR MaLR 1 467 0 341 322 130 0 chr1 37685140 37685286 -204979067 - MIR SINE MIR -14 248 84 226 275 100 33 chr1 37685923 37686043 -204978310 + L2 LINE L2 2920 3047 -225 485 290 77 0 chr1 37689000 37689169 -204975184 + MIR SINE MIR 9 190 -72 280 243 14 0 chr1 37689439 37689513 -204974840 + G-rich Low_complexity Low_complexity 3 77 0 252 310 146 53 chr1 37690188 37690469 -204973884 - L2 LINE L2 -25 3247 2941 486 257 117 28 chr1 37690565 37690744 -204973609 + MIR SINE MIR 63 257 -5 189 111 22 89 chr1 37691210 37691255 -204973098 - MER5A DNA MER1_type -62 127 86 313 275 176 85 chr1 37691647 37691924 -204972429 + L2 LINE L2 2812 3133 -139 955 144 29 0 chr1 37691924 37692098 -204972255 - L1MB2 LINE L1 -2 6169 5991 313 275 176 85 chr1 37692098 37692195 -204972158 + L2 LINE L2 3133 3220 -52 301 104 0 0 chr1 37692237 37692285 -204972068 - MADE1 DNA Mariner 0 80 33 1104 212 137 43 chr1 37692285 37692474 -204971879 - L2 LINE L2 -21 3292 3122 2484 86 0 3 chr1 37692474 37692778 -204971575 - AluSc SINE Alu -6 303 1 1104 212 137 43 chr1 37692778 37693163 -204971190 - L2 LINE L2 -191 3122 2658 1442 163 123 21 chr1 37693550 37693875 -204970478 - MLT1A1 LTR MaLR -4 361 4 455 199 291 0 chr1 37694615 37694766 -204969587 + LTR33 LTR ERVL 3 197 -324 456 211 0 21 chr1 37694833 37694928 -204969425 + LTR33 LTR ERVL 429 521 0 230 198 25 0 chr1 37695856 37695937 -204968416 + (CCCCAG)n Simple_repeat Simple_repeat 4 86 0 736 215 74 6 chr1 37697706 37697869 -204966484 - MIR SINE MIR -14 248 75 491 279 29 7 chr1 37697901 37698041 -204966312 - MIR SINE MIR 0 262 120 208 222 0 0 chr1 37698064 37698100 -204966253 + MIR SINE MIR 224 259 -3 227 296 239 0 chr1 37698108 37698196 -204966157 - MIR SINE MIR -140 122 14 456 296 30 0 chr1 37698263 37698398 -204965955 - MIR SINE MIR -80 182 44 301 245 338 0 chr1 37698761 37698900 -204965453 + L2 LINE L2 2571 2756 -558 538 253 41 20 chr1 37698957 37699103 -204965250 + L2 LINE L2 2925 3073 -240 1119 159 0 0 chr1 37699133 37699303 -204965050 - AluJb SINE Alu -14 298 129 467 185 169 79 chr1 37699307 37699496 -204964857 + L2 LINE L2 3108 3313 0 366 270 124 15 chr1 37699773 37699910 -204964443 + MIR SINE MIR 13 164 -98 584 204 84 76 chr1 37701362 37701587 -204962766 - L1MC4a LINE L1 -1892 5916 5690 463 200 45 18 chr1 37701829 37701939 -204962414 - MER94 DNA DNA -20 114 2 519 287 90 16 chr1 37701992 37702180 -204962173 - MIR SINE MIR -29 233 32 750 279 233 5 chr1 37702376 37702788 -204961565 + L2 LINE L2 1797 2302 -1012 1335 263 87 46 chr1 37702882 37703728 -204960625 - L1MC4a LINE L1 -743 5403 5039 617 75 0 0 chr1 37703753 37703833 -204960520 - MADE1 DNA Mariner 0 80 1 466 297 112 7 chr1 37703834 37704146 -204960207 + L2 LINE L2 2714 3064 -249 231 293 0 30 chr1 37704533 37704700 -204959653 + (TGG)n Simple_repeat Simple_repeat 3 164 0 263 281 0 30 chr1 37704719 37704886 -204959467 + (TGG)n Simple_repeat Simple_repeat 3 164 0 228 282 0 34 chr1 37704905 37705054 -204959299 + (TGG)n Simple_repeat Simple_repeat 3 146 0 2771 254 59 97 chr1 37705790 37706647 -204957706 + L2 LINE L2 1477 2365 -948 288 103 0 118 chr1 37706647 37706715 -204957638 + MER53 DNA DNA 1 60 -129 2771 254 59 97 chr1 37706715 37706744 -204957609 + L2 LINE L2 2365 2394 -919 2671 58 0 3 chr1 37706744 37707054 -204957299 + AluSc SINE Alu 1 309 0 2771 254 59 97 chr1 37707054 37707937 -204956416 + L2 LINE L2 2394 3313 0 199 146 24 24 chr1 37708429 37708470 -204955883 - L3 LINE CR1 -855 722 682 190 325 38 0 chr1 37708459 37708539 -204955814 - L2 LINE L2 -867 2447 2365 * 1958 109 16 0 chr1 37708633 37708937 -204955416 - L1PB2 LINE L1 -3 6148 5840 180 0 0 0 chr1 37708945 37708965 -204955388 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3508 55 4 0 chr1 37708974 37709428 -204954925 - L1PA8 LINE L1 -9 6163 5708 617 298 66 41 chr1 37709643 37709728 -204954625 - L2 LINE L2 -972 2342 2261 2971 196 10 31 chr1 37709728 37710281 -204954072 + L1MB4 LINE L1 5513 6051 -129 1618 111 134 15 chr1 37710281 37710543 -204953810 + AluSg SINE Alu 1 293 -17 2971 196 10 31 chr1 37710543 37710671 -204953682 + L1MB4 LINE L1 6051 6180 0 617 298 66 41 chr1 37710671 37710904 -204953449 - L2 LINE L2 -1053 2261 2016 410 251 52 52 chr1 37710908 37711119 -204953234 - MLT1K LTR MaLR 0 588 378 911 331 128 23 chr1 37711379 37712232 -204952121 - L2 LINE L2 -1319 1995 1054 428 347 8 0 chr1 37712256 37712380 -204951973 - L2 LINE L2 -10 3262 3138 405 306 128 35 chr1 37712593 37713109 -204951244 + L2 LINE L2 1688 2251 -1063 21 0 0 0 chr1 37713305 37713326 -204951027 + AT_rich Low_complexity Low_complexity 1 21 0 243 211 174 28 chr1 37713894 37714003 -204950350 + L2 LINE L2 2198 2322 -992 3487 281 151 31 chr1 37714012 37714099 -204950254 - L2 LINE L2 -10 3303 3228 2713 45 0 0 chr1 37714099 37714408 -204949945 - AluY SINE Alu -2 309 1 3487 281 151 31 chr1 37714408 37716731 -204947622 - L2 LINE L2 -85 3228 600 766 300 208 15 chr1 37716733 37717516 -204946837 + L2 LINE L2 2315 3252 -20 184 327 173 5 chr1 37717539 37717747 -204946606 - L2 LINE L2 -2468 846 604 584 171 90 0 chr1 37718254 37718365 -204945988 + LTR16A1 LTR ERVL 1 121 -336 281 186 0 17 chr1 37718571 37718630 -204945723 + LTR16A1 LTR ERVL 400 457 0 192 244 69 50 chr1 37719119 37719279 -204945074 - L2 LINE L2 -292 2980 2818 239 349 82 13 chr1 37719438 37719753 -204944600 - L2 LINE L2 -766 2548 2212 310 317 92 14 chr1 37721556 37721698 -204942655 - MIR SINE MIR -81 181 29 353 292 117 15 chr1 37722497 37722634 -204941719 + L2 LINE L2 3121 3271 -1 274 264 275 6 chr1 37723699 37723877 -204940476 - MIR SINE MIR -3 259 34 206 347 65 42 chr1 37724149 37724365 -204939988 - MIR SINE MIR -11 251 31 579 295 80 21 chr1 37725348 37725585 -204938768 - MIR SINE MIR 0 262 12 1070 247 8 4 chr1 37726622 37726861 -204937492 - MIR SINE MIR -1 261 22 500 235 140 12 chr1 37727804 37727974 -204936379 + MIR SINE MIR 43 241 -21 191 254 17 17 chr1 37727989 37728048 -204936305 + MIR SINE MIR 194 252 -10 334 190 50 60 chr1 37728460 37728560 -204935793 + L2 LINE L2 3213 3311 -2 341 305 34 0 chr1 37728732 37728850 -204935503 - L2 LINE L2 -221 3051 2930 3271 195 20 0 chr1 37729095 37729735 -204934618 + MER82 DNA MER2_type 1 653 0 683 264 6 0 chr1 37729994 37730153 -204934200 - MIR SINE MIR -86 176 17 377 319 85 48 chr1 37730229 37730382 -204933971 - L2 LINE L2 0 3313 3167 432 0 0 0 chr1 37730382 37730430 -204933923 + (CA)n Simple_repeat Simple_repeat 2 49 0 377 319 85 48 chr1 37730430 37730571 -204933782 - L2 LINE L2 -146 3167 3008 773 154 136 12 chr1 37730835 37730997 -204933356 + MSTD LTR MaLR 1 182 -214 385 252 57 24 chr1 37731170 37731319 -204933034 + MIR SINE MIR 45 206 -55 1786 228 37 5 chr1 37732073 37732477 -204931876 + LTR16C LTR ERVL 75 491 0 370 306 88 62 chr1 37732574 37732993 -204931360 + MLT1K LTR MaLR 141 570 -18 298 149 0 0 chr1 37733025 37733072 -204931281 + L2 LINE L2 3261 3307 -6 194 297 44 44 chr1 37733071 37733162 -204931191 + MIR SINE MIR 102 192 -70 * 1077 193 90 100 chr1 37733173 37733573 -204930780 - MSTD LTR MaLR 0 396 1 631 265 88 5 chr1 37733895 37734099 -204930254 + Charlie8 DNA MER1_type 1 221 -2196 446 306 66 22 chr1 37734136 37734319 -204930034 - MIR SINE MIR -71 191 1 387 260 80 0 chr1 37735333 37735433 -204928920 - MIR SINE MIR -134 128 21 436 45 30 0 chr1 37735433 37735499 -204928854 - L1PA4 LINE L1 0 6155 6088 539 164 217 13 chr1 37735773 37735925 -204928428 + L1MD3 LINE L1 7813 7995 0 387 193 141 13 chr1 37736227 37736382 -204927971 - MIR SINE MIR -3 259 76 412 278 167 0 chr1 37736811 37736973 -204927380 + MIR SINE MIR 1 189 -73 207 139 0 0 chr1 37737239 37737275 -204927078 + (TG)n Simple_repeat Simple_repeat 1 36 0 297 261 235 17 chr1 37738019 37738138 -204926215 - MIR SINE MIR -20 242 98 1657 178 196 60 chr1 37738250 37738338 -204926015 - MLT1F1 LTR MaLR -23 544 469 1226 192 30 15 chr1 37738338 37738609 -204925744 + ORSL DNA AcHobo 1 275 0 1657 178 196 60 chr1 37738609 37738999 -204925354 - MLT1F1 LTR MaLR -98 469 1 444 300 33 17 chr1 37739082 37739262 -204925091 + L2 LINE L2 3131 3313 0 191 343 29 19 chr1 37740039 37740144 -204924209 - L2 LINE L2 -467 2847 2742 696 106 19 10 chr1 37740980 37741084 -204923269 - AluY SINE Alu -148 163 59 1306 140 5 10 chr1 37741095 37741295 -204923058 - AluSx SINE Alu -113 199 1 22 0 0 0 chr1 37741298 37741320 -204923033 + AT_rich Low_complexity Low_complexity 1 22 0 2317 183 48 42 chr1 37741505 37742025 -204922328 + MER44D DNA MER2_type 27 604 -1 212 304 183 9 chr1 37742796 37742911 -204921442 + MIR SINE MIR 8 142 -120 21 36 0 0 chr1 37744223 37744251 -204920102 + AT_rich Low_complexity Low_complexity 1 28 0 347 216 72 16 chr1 37744770 37744895 -204919458 - MER94 DNA DNA -2 132 1 582 279 82 10 chr1 37745112 37745358 -204918995 - LTR50 LTR ERVL -43 694 271 783 274 131 8 chr1 37745415 37745660 -204918693 - LTR50 LTR ERVL -516 279 5 702 314 60 24 chr1 37745660 37746030 -204918323 - L2 LINE L2 -835 2479 2097 372 290 65 7 chr1 37746040 37746178 -204918175 - L2 LINE L2 -1408 1906 1761 326 264 59 4 chr1 37746451 37746653 -204917700 - L1MC/D LINE L1 -386 5735 5596 2184 114 0 7 chr1 37746682 37746988 -204917365 - AluSg SINE Alu -4 306 3 2642 23 10 3 chr1 37747229 37747532 -204916821 - AluY SINE Alu -6 305 1 940 209 51 9 chr1 37947828 37948043 -204716310 - L1MEc LINE L1 -6141 255 32 365 257 9 106 chr1 37948080 37948166 -204716187 + MER58 DNA MER1_type 1 75 -140 1686 158 10 35 chr1 37948166 37948340 -204716013 - AluJb SINE Alu -9 303 139 2460 85 0 0 chr1 37948340 37948646 -204715707 - AluY SINE Alu -5 306 1 1686 158 10 35 chr1 37948646 37948782 -204715571 - AluJb SINE Alu -173 139 1 365 257 9 106 chr1 37948782 37948808 -204715545 + MER58 DNA MER1_type 75 102 -113 792 167 8 15 chr1 37948820 37948952 -204715401 + FLAM_C SINE Alu 2 132 -1 1513 181 16 56 chr1 37948959 37949280 -204715073 + AluJb SINE Alu 5 312 0 237 221 35 23 chr1 37949280 37949366 -204714987 - L1MEc LINE L1 -2786 3429 3343 1440 135 47 0 chr1 37949366 37949609 -204714744 - AluSx SINE Alu 0 312 60 1535 208 70 89 chr1 37949637 37949989 -204714364 - L1MEc LINE L1 -2923 3292 2935 2199 108 0 3 chr1 37949989 37950286 -204714067 - AluSg SINE Alu -14 296 1 1535 208 70 89 chr1 37950286 37950413 -204713940 - L1MEc LINE L1 -3280 2935 2807 1647 170 3 38 chr1 37950413 37950731 -204713622 - AluJb SINE Alu -5 307 1 1535 208 70 89 chr1 37950731 37950808 -204713545 - L1MEc LINE L1 -3408 2807 2730 2131 124 0 0 chr1 37950808 37951106 -204713247 - AluSc SINE Alu -11 298 1 1535 208 70 89 chr1 37951106 37951364 -204712989 - L1MEc LINE L1 -3485 2730 2492 369 161 97 0 chr1 37951420 37951482 -204712871 - AluS SINE Alu -234 69 2 1743 167 3 17 chr1 37951505 37951805 -204712548 - AluJo SINE Alu -10 302 7 354 248 180 53 chr1 37951822 37952086 -204712267 - L1MEc LINE L1 -3783 2432 2178 306 226 173 42 chr1 37952103 37952271 -204712082 - L1MEc LINE L1 -4266 2130 1941 755 230 26 49 chr1 37952321 37952547 -204711806 - L1MC4 LINE L1 -959 7083 6863 198 330 11 43 chr1 37952556 37952650 -204711703 + L2 LINE L2 2716 2806 -508 244 283 7 101 chr1 37953013 37953151 -204711202 + MIR3 SINE MIR 69 193 -15 25 31 0 0 chr1 37953436 37953468 -204710885 + AT_rich Low_complexity Low_complexity 1 32 0 2545 47 0 7 chr1 37953468 37953796 -204710557 - AluY SINE Alu 0 311 1 1185 90 0 6 chr1 37953803 37953959 -204710394 - AluSg/x SINE Alu -24 288 134 2117 125 7 7 chr1 37953959 37954254 -204710099 - AluSx SINE Alu -17 295 1 188 241 74 0 chr1 37954414 37954468 -204709885 - MIR SINE MIR -111 97 40 1986 129 3 7 chr1 37954543 37954838 -204709515 + AluJb SINE Alu 4 297 -15 27 0 0 0 chr1 37955124 37955151 -204709202 + AT_rich Low_complexity Low_complexity 1 27 0 2236 121 3 0 chr1 37955361 37955668 -204708685 - AluSq SINE Alu -5 308 1 524 228 0 7 chr1 37955903 37956039 -204708314 + CT-rich Low_complexity Low_complexity 1 135 0 529 164 41 75 chr1 37956040 37956186 -204708167 - FAM SINE Alu -3 46 1 1646 175 34 10 chr1 37956286 37956578 -204707775 + AluJo SINE Alu 1 299 -13 2281 86 0 21 chr1 37956837 37957175 -204707178 - AluSq SINE Alu 0 332 1 3059 274 114 23 chr1 37957243 37958476 -204705877 + L2 LINE L2 1688 3035 -278 889 186 0 53 chr1 37958476 37958624 -204705729 + FRAM SINE Alu 1 136 -176 2395 95 3 0 chr1 37958624 37958929 -204705424 - AluSx SINE Alu -6 306 1 889 186 0 53 chr1 37958929 37958968 -204705385 + FRAM SINE Alu 136 176 0 217 268 144 31 chr1 37958968 37959065 -204705288 + L2 LINE L2 3027 3134 -179 481 173 12 0 chr1 37959538 37959619 -204704734 + MER69A DNA AcHobo 42 123 -54 180 0 0 0 chr1 37960284 37960304 -204704049 + (T)n Simple_repeat Simple_repeat 1 20 0 2287 74 3 0 chr1 37960396 37960705 -204703648 + AluY SINE Alu 1 310 0 380 206 254 0 chr1 37960714 37960840 -204703513 - MIR SINE MIR -27 235 78 214 287 138 21 chr1 37960929 37961023 -204703330 + MIR SINE MIR 38 142 -66 383 344 41 0 chr1 37961203 37961325 -204703028 + MIR3 SINE MIR 33 159 -49 261 366 87 25 chr1 37962307 37962468 -204701885 + MIR3 SINE MIR 24 194 -14 36 0 0 0 chr1 37963418 37963454 -204700899 + GC_rich Low_complexity Low_complexity 1 36 0 521 242 134 18 chr1 37964387 37964575 -204699778 - MIR SINE MIR -18 244 38 2035 76 0 82 chr1 37964793 37965109 -204699244 + AluSx SINE Alu 7 296 -16 341 50 0 0 chr1 37965635 37965675 -204698678 - LTR57-int LTR ERVL -3256 2087 2048 2182 115 0 0 chr1 37965726 37966013 -204698340 - AluSx SINE Alu -25 287 1 820 183 33 0 chr1 37966132 37966285 -204698068 + FRAM SINE Alu 4 161 -5 2402 66 0 20 chr1 37967016 37967321 -204697032 - AluY SINE Alu -12 299 1 189 121 0 0 chr1 37967575 37967608 -204696745 + (CA)n Simple_repeat Simple_repeat 1 33 0 29 0 0 0 chr1 37968332 37968361 -204695992 + AT_rich Low_complexity Low_complexity 1 29 0 1515 154 39 77 chr1 37968630 37968941 -204695412 + AluJo SINE Alu 1 299 -13 323 198 257 0 chr1 37969059 37969160 -204695193 - MIR SINE MIR -30 232 106 2217 102 44 0 chr1 37969540 37969833 -204694520 - AluSg SINE Alu -4 306 1 273 222 28 28 chr1 37970052 37970124 -204694229 + MER116 DNA Mariner 6 77 -3 404 145 0 13 chr1 37970549 37970625 -204693728 + (TCCC)n Simple_repeat Simple_repeat 2 76 0 1024 212 72 107 chr1 37970643 37970914 -204693439 - L1MC5 LINE L1 -182 7779 7500 2044 138 3 0 chr1 37970914 37971211 -204693142 - AluSq SINE Alu -15 298 1 1024 212 72 107 chr1 37971211 37971399 -204692954 - L1MC5 LINE L1 -461 7500 7337 689 278 12 6 chr1 37971399 37971572 -204692781 + MER5B DNA MER1_type 1 174 -4 1024 212 72 107 chr1 37971572 37971626 -204692727 - L1MC5 LINE L1 -624 7337 7283 420 258 47 8 chr1 37971630 37971758 -204692595 + MER94 DNA DNA 2 134 0 902 215 72 69 chr1 37971902 37972237 -204692116 - L1MC5 LINE L1 -744 7217 6882 788 211 177 34 chr1 37972256 37972616 -204691737 - MLT1C LTR MaLR -3 464 11 1841 147 22 136 chr1 37972639 37972731 -204691622 - MLT1C-int LTR MaLR -14 1357 1256 2125 116 14 0 chr1 37972731 37973025 -204691328 - AluY SINE Alu -13 298 1 1841 147 22 136 chr1 37973025 37973389 -204690964 - MLT1C-int LTR MaLR -115 1256 953 3531 198 43 41 chr1 37973559 37974389 -204689964 - MLT1C-int LTR MaLR -496 875 44 771 118 0 27 chr1 37974830 37974940 -204689413 + FRAM SINE Alu 58 164 -12 2253 84 3 29 chr1 37975057 37975367 -204688986 - AluSq SINE Alu -7 306 5 24 0 0 0 chr1 37975562 37975586 -204688767 + AT_rich Low_complexity Low_complexity 1 24 0 2239 126 3 0 chr1 37975711 37976013 -204688340 - AluSq SINE Alu -10 303 1 519 262 45 82 chr1 37976053 37976273 -204688080 - L1ME1 LINE L1 -31 6135 5925 2298 106 0 7 chr1 37976273 37976576 -204687777 + AluSq SINE Alu 1 301 -12 519 262 45 82 chr1 37976576 37976622 -204687731 - L1ME1 LINE L1 -241 5925 5879 451 183 0 0 chr1 37976679 37976750 -204687603 + AluJ/FRAM SINE Alu 222 292 -20 354 315 112 52 chr1 37976791 37977023 -204687330 - L1MEc LINE L1 -4437 2284 2039 989 178 18 0 chr1 37977023 37977186 -204687167 - FRAM SINE Alu 0 166 1 1017 189 88 47 chr1 37977194 37977512 -204686841 - L1MEc LINE L1 -4707 1833 1503 825 114 8 0 chr1 37977514 37977637 -204686716 - L1MB4 LINE L1 -3 6177 6054 403 71 12 47 chr1 37977761 37977846 -204686507 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 1874 129 17 37 chr1 37977868 37978020 -204686333 - AluSx SINE Alu -24 288 143 2200 123 0 0 chr1 37978020 37978329 -204686024 - AluSx SINE Alu -3 309 1 1874 129 17 37 chr1 37978329 37978470 -204685883 - AluSx SINE Alu -169 143 1 2073 139 3 3 chr1 37978514 37978824 -204685529 - AluSx SINE Alu -2 310 1 34 42 0 0 chr1 37978913 37978961 -204685392 + AT_rich Low_complexity Low_complexity 1 48 0 1135 119 6 0 chr1 37978981 37979140 -204685213 + MER101 LTR ERV1 1 160 -314 2456 68 0 0 chr1 37979428 37979720 -204684633 - AluSx SINE Alu -20 292 1 1625 145 22 14 chr1 37979958 37980234 -204684119 + AluSx SINE Alu 35 312 0 1364 188 43 18 chr1 37980845 37981121 -204683232 + AluJo SINE Alu 14 296 -16 21 57 0 0 chr1 37981121 37981156 -204683197 + AT_rich Low_complexity Low_complexity 1 35 0 288 305 30 69 chr1 37981297 37981428 -204682925 - MIR3 SINE MIR -28 180 55 2878 184 17 9 chr1 37981503 37982030 -204682323 + Tigger6b DNA MER2_type 6 536 -1061 2357 83 0 0 chr1 37982031 37982319 -204682034 + AluSq SINE Alu 11 298 -15 2159 101 3 3 chr1 37982332 37982620 -204681733 + AluSq SINE Alu 1 288 -25 225 94 0 0 chr1 37982620 37982652 -204681701 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 3784 188 44 48 chr1 37982688 37983236 -204681117 + Tigger6b DNA MER2_type 671 1219 -378 2350 102 3 0 chr1 37983236 37983539 -204680814 - AluSx SINE Alu -8 304 1 3784 188 44 48 chr1 37983539 37983631 -204680722 + Tigger6b DNA MER2_type 1219 1310 -287 2237 120 0 7 chr1 37983631 37983939 -204680414 - AluSx SINE Alu -6 306 1 3784 188 44 48 chr1 37983939 37984068 -204680285 + Tigger6b DNA MER2_type 1310 1438 -159 2174 96 24 0 chr1 37984068 37984361 -204679992 - AluSp SINE Alu -13 300 1 3784 188 44 48 chr1 37984361 37984492 -204679861 + Tigger6b DNA MER2_type 1438 1570 -27 1840 147 14 7 chr1 37984524 37984810 -204679543 + AluJo SINE Alu 2 289 -23 3011 200 42 22 chr1 37985233 37986031 -204678322 + MER21B LTR ERV1 1 862 -1 207 0 0 0 chr1 37986770 37986793 -204677560 + (TG)n Simple_repeat Simple_repeat 2 24 0 509 237 9 9 chr1 37986800 37986914 -204677439 + MIR SINE MIR 103 216 -46 254 278 0 0 chr1 37986924 37986978 -204677375 + AluSg/x SINE Alu 133 186 -116 38 0 0 0 chr1 37986986 37987024 -204677329 + AT_rich Low_complexity Low_complexity 1 38 0 464 269 197 22 chr1 37987037 37987260 -204677093 + L1MC4a LINE L1 5614 5875 -1933 878 226 69 42 chr1 37987717 37987862 -204676491 - L2 LINE L2 -1372 1942 1802 2293 104 0 7 chr1 37987862 37988170 -204676183 - AluSg SINE Alu -4 306 1 2284 109 0 6 chr1 37988170 37988482 -204675871 - AluSx SINE Alu -1 311 1 878 226 69 42 chr1 37988482 37988596 -204675757 - L2 LINE L2 -1511 1803 1675 2375 74 0 46 chr1 37988708 37989034 -204675319 - AluY SINE Alu 0 311 1 228 237 26 70 chr1 37989264 37989378 -204674975 - HAL1 LINE L1 -1130 1377 1269 932 95 0 0 chr1 37989461 37989577 -204674776 - AluSc SINE Alu -193 116 1 689 259 104 48 chr1 37990943 37991259 -204673094 - L1ME4a LINE L1 -2 6119 5765 5522 146 30 9 chr1 37991259 37992038 -204672315 - MER6 DNA MER2_type -1 864 65 2108 130 0 3 chr1 37992038 37992339 -204672014 - AluSx SINE Alu -10 302 3 5522 146 30 9 chr1 37992339 37992406 -204671947 - MER6 DNA MER2_type -800 65 1 689 259 104 48 chr1 37992406 37992571 -204671782 - L1ME4a LINE L1 -356 5765 5611 314 246 0 15 chr1 37993035 37993100 -204671253 - MLT1K LTR MaLR -339 249 186 1627 170 16 53 chr1 37993453 37993776 -204670577 - AluJo SINE Alu -1 311 1 677 212 0 23 chr1 37994902 37995034 -204669319 - FLAM_C SINE Alu -4 129 1 21 57 0 0 chr1 37995035 37995070 -204669283 + AT_rich Low_complexity Low_complexity 1 35 0 1788 179 10 0 chr1 37995114 37995404 -204668949 + AluJo SINE Alu 1 293 -19 263 161 0 32 chr1 37995404 37995466 -204668887 + GA-rich Low_complexity Low_complexity 1 60 0 386 271 164 51 chr1 37995466 37995858 -204668495 - MLT1J LTR MaLR -69 442 1 1957 135 0 14 chr1 37996684 37997019 -204667334 + AluSx SINE Alu 1 331 0 23 54 0 0 chr1 37997255 37997292 -204667061 + AT_rich Low_complexity Low_complexity 1 37 0 1271 265 69 33 chr1 37997484 37997876 -204666477 - MLT1G LTR MaLR -16 574 169 999 217 10 10 chr1 37997887 37998094 -204666259 - AluJo SINE Alu -22 290 84 702 205 142 32 chr1 37998094 37998284 -204666069 - MLT1G LTR MaLR -380 215 5 1958 146 7 7 chr1 37998437 37998738 -204665615 - AluSx SINE Alu -11 301 1 1833 148 0 11 chr1 37999236 37999513 -204664840 + AluJo SINE Alu 23 296 -16 320 273 98 31 chr1 37999529 37999723 -204664630 - L1MC/D LINE L1 -2262 5546 5340 361 258 56 84 chr1 38000342 38000420 -204663933 - L1ME3A LINE L1 -220 5950 5871 2007 127 3 17 chr1 38000420 38000719 -204663634 - AluSg SINE Alu -15 295 1 361 258 56 84 chr1 38000719 38000818 -204663535 - L1ME3A LINE L1 -299 5871 5778 1160 138 30 35 chr1 38000820 38000851 -204663502 - L1MB2 LINE L1 -2 6169 6139 2051 78 89 4 chr1 38000851 38001132 -204663221 + AluY SINE Alu 1 305 -6 1160 138 30 35 chr1 38001132 38001331 -204663022 - L1MB2 LINE L1 -32 6139 5940 248 193 0 18 chr1 38001434 38001491 -204662862 - L1MB2 LINE L1 -339 5844 5789 287 90 13 128 chr1 38001543 38001570 -204662783 - L1M3 LINE L1 -334 5849 5820 2009 121 0 57 chr1 38001570 38001885 -204662468 - AluSq SINE Alu -16 297 1 287 90 13 128 chr1 38001885 38001935 -204662418 - L1M3 LINE L1 -363 5820 5781 1440 144 60 75 chr1 38001936 38002255 -204662098 + THE1C LTR MaLR 1 314 -61 1971 136 3 14 chr1 38002257 38002543 -204661810 + AluSx SINE Alu 1 283 -29 1405 190 50 53 chr1 38002721 38002843 -204661510 - MER58B DNA MER1_type -2079 341 220 2149 114 20 0 chr1 38002843 38003140 -204661213 + AluSx SINE Alu 1 303 -9 1405 190 50 53 chr1 38003140 38003359 -204660994 - MER58B DNA MER1_type -2200 220 1 433 136 0 0 chr1 38003451 38003510 -204660843 + Tigger2 DNA MER2_type 1 59 -2659 237 176 235 0 chr1 38003529 38003580 -204660773 - MER2 DNA MER2_type 0 345 283 * 723 195 27 76 chr1 38003558 38003743 -204660610 - MER8 DNA MER2_type -62 177 2 654 282 85 45 chr1 38003744 38004238 -204660115 - L1MB2 LINE L1 -607 5563 5090 1966 150 0 42 chr1 38004238 38004418 -204659935 - MER2 DNA MER2_type 0 344 185 2132 113 0 0 chr1 38004418 38004702 -204659651 - AluSq SINE Alu -16 297 14 1966 150 0 42 chr1 38004702 38004880 -204659473 - MER2 DNA MER2_type -159 185 1 654 282 85 45 chr1 38004880 38005464 -204658889 - L1MB2 LINE L1 -1080 5090 4447 3262 129 0 69 chr1 38005465 38006030 -204658323 - MER1A DNA MER1_type -1 526 1 428 296 166 24 chr1 38006059 38006306 -204658047 - L1M4 LINE L1 -1120 5026 4745 23 0 0 0 chr1 38006682 38006705 -204657648 + AT_rich Low_complexity Low_complexity 1 23 0 526 251 18 27 chr1 38007124 38007343 -204657010 - L1M4 LINE L1 -2540 3606 3390 1423 160 25 25 chr1 38007343 38007618 -204656735 - AluJo SINE Alu -14 298 24 1471 206 111 85 chr1 38007653 38007849 -204656504 - L1ME LINE L1 -679 5483 5294 1633 152 0 40 chr1 38007849 38008147 -204656206 - AluJb SINE Alu 0 302 16 1471 206 111 85 chr1 38008147 38008280 -204656073 - L1ME LINE L1 -868 5294 5166 204 97 0 0 chr1 38008280 38008311 -204656042 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 1471 206 111 85 chr1 38008311 38008763 -204655590 - L1ME LINE L1 -996 5166 4672 2329 86 3 0 chr1 38008763 38009064 -204655289 + AluSx SINE Alu 1 302 -10 1471 206 111 85 chr1 38009064 38009230 -204655123 - L1ME LINE L1 -1490 4672 4512 2156 122 7 0 chr1 38009230 38009534 -204654819 - AluSx SINE Alu -6 306 1 1536 254 52 31 chr1 38009534 38010207 -204654146 - L1ME LINE L1 -2010 4136 3394 440 198 83 25 chr1 38010221 38010342 -204654011 + MER3 DNA MER1_type 22 149 -60 269 108 0 0 chr1 38010342 38010379 -204653974 + U2 snRNA snRNA 1 37 -151 234 200 33 17 chr1 38010378 38010438 -204653915 + MER3 DNA MER1_type 148 208 -1 * 329 216 57 0 chr1 38010528 38010616 -204653737 - L1ME LINE L1 -2784 3362 3270 1614 172 28 7 chr1 38010637 38010927 -204653426 - AluSq SINE Alu -17 296 1 2240 170 40 7 chr1 38010962 38011415 -204652938 - L1MB2 LINE L1 -4 6167 5700 2217 131 0 0 chr1 38011554 38011860 -204652493 + AluSx SINE Alu 6 311 -1 562 235 71 18 chr1 38011991 38012161 -204652192 - MER58C DNA MER1_type -5 210 32 2236 89 0 7 chr1 38012192 38012485 -204651868 - AluSq SINE Alu -22 291 1 1979 136 27 0 chr1 38014165 38014466 -204649887 - AluSx SINE Alu -3 309 1 2255 109 0 7 chr1 38014724 38015027 -204649326 + AluSx SINE Alu 1 301 -11 36 53 0 0 chr1 38015102 38015159 -204649194 + AT_rich Low_complexity Low_complexity 1 57 0 1557 146 4 8 chr1 38015159 38015399 -204648954 - AluJo SINE Alu -25 287 49 2199 106 7 0 chr1 38015477 38015769 -204648584 - AluSx SINE Alu -18 294 1 889 175 26 7 chr1 38017299 38017453 -204646900 + AluJo SINE Alu 1 157 -155 198 0 0 0 chr1 38017454 38017476 -204646877 + (CA)n Simple_repeat Simple_repeat 1 22 0 324 200 0 3 chr1 38017478 38017552 -204646801 + AluJo SINE Alu 82 138 -164 342 0 0 0 chr1 38017553 38017591 -204646762 + (CA)n Simple_repeat Simple_repeat 1 38 0 2029 274 89 54 chr1 38017795 38018771 -204645582 + L2 LINE L2 1927 2936 -378 1799 172 19 13 chr1 38019050 38019358 -204644995 + AluJb SINE Alu 1 310 -2 648 296 103 21 chr1 38019413 38019627 -204644726 - L1MC4a LINE L1 -1926 5882 5630 2392 96 0 3 chr1 38019627 38019940 -204644413 + AluSx SINE Alu 1 312 0 648 296 103 21 chr1 38019940 38020056 -204644297 - L1MC4a LINE L1 -2178 5630 5525 476 145 0 13 chr1 38020059 38020135 -204644218 - MER58A DNA MER1_type 0 224 150 2242 84 6 43 chr1 38020217 38020539 -204643814 - AluY SINE Alu -1 310 1 1624 170 67 0 chr1 38021138 38021408 -204642945 + AluSx SINE Alu 1 288 -24 302 279 54 48 chr1 38021626 38021773 -204642580 - L1MC4 LINE L1 -803 7239 7092 418 342 0 9 chr1 38021841 38021955 -204642398 + L2 LINE L2 3160 3272 0 193 324 14 14 chr1 38021966 38022037 -204642316 - L2 LINE L2 -557 2757 2687 1681 158 10 48 chr1 38022089 38022380 -204641973 - AluJo SINE Alu -30 282 3 231 227 187 0 chr1 38022405 38022480 -204641873 - MLT1K LTR MaLR 0 588 500 192 323 48 0 chr1 38023568 38023630 -204640723 + MIR3 SINE MIR 8 72 -136 254 323 126 36 chr1 38023647 38023870 -204640483 - MIR SINE MIR 0 262 20 36 23 0 0 chr1 38025020 38025063 -204639290 + AT_rich Low_complexity Low_complexity 1 43 0 228 387 99 7 chr1 38025427 38025569 -204638784 + L2 LINE L2 3102 3256 -16 27 0 0 0 chr1 38026128 38026155 -204638198 + AT_rich Low_complexity Low_complexity 1 27 0 1597 157 42 54 chr1 38027883 38028081 -204636272 - AluJb SINE Alu -1 311 117 1809 139 7 4 chr1 38028081 38028355 -204635998 + AluSx SINE Alu 1 275 -37 1597 157 42 54 chr1 38028355 38028469 -204635884 - AluJb SINE Alu -195 117 3 865 175 19 25 chr1 38028501 38028661 -204635692 - MER20 DNA MER1_type 0 219 61 248 348 37 43 chr1 38030254 38030418 -204633935 - MIR SINE MIR -42 220 58 216 0 0 0 chr1 38030431 38030455 -204633898 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 122 0 39 chr1 38031921 38032233 -204632120 + AluSq SINE Alu 1 300 -13 2055 118 0 36 chr1 38032412 38032718 -204631635 - AluSq SINE Alu -18 295 1 2006 115 39 0 chr1 38032888 38033167 -204631186 + AluSx SINE Alu 5 294 -18 1043 163 8 119 chr1 38033211 38033463 -204630890 + MER58A DNA MER1_type 1 224 0 440 275 59 45 chr1 38033757 38033979 -204630374 + L1ME4a LINE L1 5523 5747 -374 1143 152 33 5 chr1 38034016 38034226 -204630127 - MER96B DNA MER1_type? -201 216 1 416 258 139 24 chr1 38034630 38034917 -204629436 + L1ME4a LINE L1 5791 6110 -11 31 58 0 0 chr1 38034927 38034979 -204629374 + AT_rich Low_complexity Low_complexity 1 52 0 207 196 0 0 chr1 38035164 38035210 -204629143 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 297 89 0 0 chr1 38035514 38035559 -204628794 + (T)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chr1 38035919 38035941 -204628412 + (T)n Simple_repeat Simple_repeat 1 22 0 405 0 0 0 chr1 38036254 38036299 -204628054 + (TG)n Simple_repeat Simple_repeat 1 45 0 2280 71 0 3 chr1 38036302 38036605 -204627748 - AluY SINE Alu 0 302 1 497 319 57 27 chr1 38037175 38037510 -204626843 - MARNA DNA Mariner -156 430 86 811 157 108 3 chr1 38037561 38037789 -204626564 + L1MA8 LINE L1 5989 6223 -68 1281 145 39 30 chr1 38037810 38038044 -204626309 - MER46A DNA MER2_type 0 236 1 1791 154 0 4 chr1 38038065 38038338 -204626015 + AluSx SINE Alu 1 272 -40 255 61 0 0 chr1 38038411 38038444 -204625909 + (TA)n Simple_repeat Simple_repeat 1 33 0 1691 93 4 62 chr1 38038544 38038803 -204625550 - AluY SINE Alu -67 244 1 1078 113 0 0 chr1 38038805 38038947 -204625406 - AluY SINE Alu -169 142 1 2516 73 0 10 chr1 38039130 38039443 -204624910 - AluSp SINE Alu -2 311 2 726 155 0 9 chr1 38039629 38039745 -204624608 + FLAM_A SINE Alu 1 115 -18 1768 195 0 0 chr1 38040904 38041202 -204623151 + AluJo SINE Alu 1 298 -14 2309 84 0 14 chr1 38041640 38041936 -204622417 - AluSc SINE Alu -17 292 1 2320 90 0 0 chr1 38042029 38042317 -204622036 - AluSx SINE Alu -24 288 1 11366 132 88 73 chr1 38042589 38044205 -204620148 - Tigger1 DNA MER2_type -1 2417 827 2103 122 0 3 chr1 38044205 38044509 -204619844 - AluSc SINE Alu -6 303 1 932 102 0 7 chr1 38044509 38044646 -204619707 - AluSq/x SINE Alu -176 136 1 11366 132 88 73 chr1 38044646 38045251 -204619102 - Tigger1 DNA MER2_type -1590 828 24 2221 82 4 0 chr1 38045409 38045736 -204618617 - AluY SINE Alu 0 328 1 344 225 78 8 chr1 38045996 38046125 -204618228 - L1ME4a LINE L1 -15 6106 5969 237 292 56 0 chr1 38046134 38046206 -204618147 - MIR SINE MIR -76 186 111 2454 86 0 0 chr1 38046973 38047275 -204617078 + AluSp SINE Alu 1 302 -11 239 227 68 11 chr1 38047277 38047365 -204616988 - L1MC4 LINE L1 -1340 6702 6610 201 147 0 0 chr1 38047365 38047399 -204616954 + (TA)n Simple_repeat Simple_repeat 1 34 0 2007 102 27 20 chr1 38047564 38047857 -204616496 - AluSx SINE Alu -17 295 1 336 21 0 0 chr1 38048353 38048400 -204615953 - L1MA3 LINE L1 0 6305 6259 24 0 0 0 chr1 38048405 38048429 -204615924 + AT_rich Low_complexity Low_complexity 1 24 0 324 339 21 24 chr1 38048884 38049116 -204615237 + MIR SINE MIR 12 243 -19 452 249 18 98 chr1 38049861 38049939 -204614414 - MER112 DNA MER1_type -1 255 172 2021 121 9 19 chr1 38049939 38050254 -204614099 - AluSx SINE Alu 0 312 1 452 249 18 98 chr1 38050254 38050452 -204613901 - MER112 DNA MER1_type -84 172 1 1956 136 149 8 chr1 38051346 38051721 -204612632 - MSTA LTR MaLR 0 428 1 285 289 62 0 chr1 38051970 38052067 -204612286 + L2 LINE L2 3199 3301 -12 369 165 68 29 chr1 38053223 38053305 -204611048 + MER112 DNA MER1_type 5 93 -167 2398 104 0 0 chr1 38053305 38053614 -204610739 - AluSx SINE Alu -3 309 1 369 165 68 29 chr1 38053614 38053634 -204610719 + MER112 DNA MER1_type 93 111 -149 196 30 61 0 chr1 38053687 38053720 -204610633 + A-rich Low_complexity Low_complexity 3 37 0 853 112 15 22 chr1 38053811 38053945 -204610408 - FLAM_C SINE Alu 0 133 1 224 333 39 0 chr1 38054892 38054970 -204609383 + L2 LINE L2 3098 3178 -94 2357 108 3 0 chr1 38054975 38055282 -204609071 - AluSx SINE Alu -4 308 1 1645 138 116 8 chr1 38055413 38055681 -204608672 - AluSg1 SINE Alu -12 297 1 451 284 89 5 chr1 38055701 38055891 -204608462 + MIR SINE MIR 46 251 -11 418 242 38 147 chr1 38057202 38057240 -204607113 + MIR SINE MIR 2 43 -219 1894 158 3 16 chr1 38057240 38057544 -204606809 + AluJo SINE Alu 1 300 -12 418 242 38 147 chr1 38057544 38057630 -204606723 + MIR SINE MIR 43 137 -125 1606 173 25 62 chr1 38057630 38057641 -204606712 - AluJo SINE Alu -1 311 301 189 0 0 0 chr1 38057641 38057662 -204606691 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 411 38 0 0 chr1 38057661 38057714 -204606639 + (TG)n Simple_repeat Simple_repeat 2 54 0 1606 173 25 62 chr1 38057662 38058025 -204606328 - AluJo SINE Alu -11 301 1 418 242 38 147 chr1 38058025 38058192 -204606161 + MIR SINE MIR 137 262 0 2180 119 0 0 chr1 38058282 38058575 -204605778 - AluSx SINE Alu -19 293 1 2305 119 0 0 chr1 38059371 38059681 -204604672 - AluSx SINE Alu 0 312 3 330 243 10 39 chr1 38059695 38059798 -204604555 + L2 LINE L2 3136 3235 -37 2288 91 7 3 chr1 38060092 38060388 -204603965 + AluSq SINE Alu 1 297 -16 881 263 4 52 chr1 38060421 38060585 -204603768 - MIR SINE MIR -1 261 114 2183 128 7 0 chr1 38060585 38060883 -204603470 + AluSq SINE Alu 1 300 -13 881 263 4 52 chr1 38060883 38060988 -204603365 - MIR SINE MIR -148 114 5 248 332 39 17 chr1 38061002 38061272 -204603081 + L1ME LINE L1 5233 5514 -652 1000 179 115 12 chr1 38061293 38061608 -204602745 - L1MC4 LINE L1 -848 6960 6594 2518 77 0 0 chr1 38061764 38062075 -204602278 + AluY SINE Alu 1 311 0 2092 100 7 0 chr1 38062097 38062484 -204601869 - AluSx SINE Alu 0 389 1 264 59 0 0 chr1 38062490 38062524 -204601829 + (TTCTC)n Simple_repeat Simple_repeat 1 34 0 1737 163 0 14 chr1 38062530 38062671 -204601682 - AluSx SINE Alu -39 273 136 2087 134 0 3 chr1 38062671 38062969 -204601384 - AluSq SINE Alu -16 297 1 1737 163 0 14 chr1 38062969 38063104 -204601249 - AluSx SINE Alu -176 136 1 2343 138 13 100 chr1 38063113 38063266 -204601087 - L1MC3 LINE L1 -8 7777 7612 2080 91 4 4 chr1 38063266 38063531 -204600822 - AluSx SINE Alu -18 294 30 2343 138 13 100 chr1 38063531 38063905 -204600448 - L1MC3 LINE L1 -173 7612 7296 180 0 0 0 chr1 38063915 38063935 -204600418 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1873 153 20 0 chr1 38063944 38064244 -204600109 - AluSx SINE Alu -6 306 1 1448 189 3 39 chr1 38064432 38064717 -204599636 + AluJo SINE Alu 13 287 -25 2718 13 0 10 chr1 38064724 38065028 -204599325 + AluY SINE Alu 1 301 -10 912 188 0 0 chr1 38065031 38065253 -204599100 + FRAM SINE Alu 1 86 0 1081 243 53 88 chr1 38065253 38065623 -204598730 - MLT1J LTR MaLR -92 419 64 2220 71 7 7 chr1 38065623 38065930 -204598423 + AluY SINE Alu 1 307 0 1081 243 53 88 chr1 38065930 38065990 -204598363 - MLT1J LTR MaLR -447 64 3 2506 97 0 0 chr1 38066131 38066442 -204597911 - AluSq SINE Alu -2 311 1 1923 157 0 3 chr1 38066707 38067000 -204597353 - AluSx SINE Alu -20 292 1 299 268 113 21 chr1 38067492 38067634 -204596719 - MIR SINE MIR -16 246 92 1904 168 0 3 chr1 38067783 38068086 -204596267 - AluJb SINE Alu -2 310 9 349 290 136 18 chr1 38068137 38068306 -204596047 + MER5A DNA MER1_type 1 189 0 718 217 7 0 chr1 38068840 38068983 -204595370 - MER69 DNA AcHobo -2 2524 2381 440 141 0 0 chr1 38069129 38069193 -204595160 - MER69 DNA AcHobo -1159 67 4 753 135 88 100 chr1 38069227 38069397 -204594956 - AluJb SINE Alu -8 304 137 22 35 0 0 chr1 38069502 38069531 -204594822 + AT_rich Low_complexity Low_complexity 1 29 0 810 127 17 0 chr1 38069531 38069649 -204594704 - FLAM_C SINE Alu -23 120 1 2135 130 3 0 chr1 38069915 38070214 -204594139 - AluSx SINE Alu -12 300 1 280 289 16 55 chr1 38070339 38070467 -204593886 - MIR3 SINE MIR -45 163 41 511 289 6 6 chr1 38070637 38070793 -204593560 + L1ME LINE L1 5565 5720 -401 2140 119 0 0 chr1 38070807 38071128 -204593225 + AluSc SINE Alu 3 323 0 2075 133 0 7 chr1 38071132 38071432 -204592921 + AluSx SINE Alu 1 298 -14 26 50 0 0 chr1 38071453 38071493 -204592860 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 38071653 38071681 -204592672 + AT_rich Low_complexity Low_complexity 1 28 0 2270 101 0 14 chr1 38071681 38071978 -204592375 - AluSx SINE Alu -19 293 1 261 0 0 0 chr1 38071978 38072007 -204592346 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1861 109 4 0 chr1 38072007 38072254 -204592099 - AluSq SINE Alu -30 283 36 1405 194 0 78 chr1 38072264 38072583 -204591770 - AluJo SINE Alu -18 294 1 1199 249 128 85 chr1 38072584 38073201 -204591152 - HAL1 LINE L1 -201 2306 1634 1442 186 49 33 chr1 38073201 38073445 -204590908 + AluJb SINE Alu 1 252 -60 183 42 0 0 chr1 38073445 38073469 -204590884 + (CACTG)n Simple_repeat Simple_repeat 1 24 0 1442 186 49 33 chr1 38073469 38073531 -204590822 + AluJb SINE Alu 252 312 0 1199 249 128 85 chr1 38073531 38073854 -204590499 - HAL1 LINE L1 -873 1634 1326 2110 102 7 0 chr1 38074065 38074340 -204590013 + AluY SINE Alu 13 289 -22 2228 109 3 0 chr1 38074747 38075041 -204589312 - AluSg SINE Alu -15 295 1 762 170 17 0 chr1 38075342 38075505 -204588848 - MER51A LTR ERV1 -3 637 480 244 114 114 139 chr1 38075596 38075675 -204588678 - MER51A LTR ERV1 -383 251 175 529 290 23 12 chr1 38075716 38075896 -204588457 - MER51A LTR ERV1 -339 301 1 310 318 54 0 chr1 38075898 38076046 -204588307 - MIR SINE MIR -25 237 82 216 350 61 18 chr1 38076254 38076289 -204588064 - L2 LINE L2 -240 3032 3000 1750 123 123 0 chr1 38076289 38076558 -204587795 - AluSx SINE Alu 0 302 1 216 350 61 18 chr1 38076558 38076685 -204587668 - L2 LINE L2 -272 3000 2863 326 244 42 101 chr1 38076826 38076945 -204587408 + Charlie1 DNA MER1_type 1 112 -2649 801 178 89 0 chr1 38077002 38077148 -204587205 - FAM SINE Alu -7 42 1 630 220 23 35 chr1 38077148 38077321 -204587032 + Charlie1 DNA MER1_type 1906 2076 -685 986 187 25 5 chr1 38077348 38077546 -204586807 - L1MB2 LINE L1 -50 6121 5920 243 0 0 0 chr1 38077593 38077620 -204586733 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1805 138 0 0 chr1 38077633 38077879 -204586474 - AluSq SINE Alu -47 266 21 2475 128 2 33 chr1 38077954 38078069 -204586284 - L1MB2 LINE L1 -240 5931 5814 2215 127 0 0 chr1 38078069 38078377 -204585976 + AluSx SINE Alu 1 308 -4 2475 128 2 33 chr1 38078377 38078660 -204585693 - L1MB2 LINE L1 -357 5814 5545 4936 174 74 61 chr1 38078661 38078780 -204585573 + Charlie1a DNA MER1_type 100 216 -2545 2329 62 10 7 chr1 38078780 38079071 -204585282 - AluY SINE Alu -19 292 1 4936 174 74 61 chr1 38079071 38079184 -204585169 + Charlie1a DNA MER1_type 216 326 -2435 2294 115 3 0 chr1 38079184 38079488 -204584865 - AluSx SINE Alu -7 305 1 4936 174 74 61 chr1 38079488 38079604 -204584749 + Charlie1a DNA MER1_type 326 439 -2322 2281 115 3 0 chr1 38079604 38079916 -204584437 - AluSq SINE Alu 0 313 1 4936 174 74 61 chr1 38079916 38080420 -204583933 + Charlie1a DNA MER1_type 439 935 -1826 1945 116 6 69 chr1 38080420 38080515 -204583838 + AluSx SINE Alu 1 100 -212 2128 131 3 3 chr1 38080515 38080820 -204583533 + AluSq SINE Alu 1 305 -8 1945 116 6 69 chr1 38080820 38081044 -204583309 + AluSx SINE Alu 100 300 -12 4936 174 74 61 chr1 38081044 38081268 -204583085 + Charlie1a DNA MER1_type 935 1201 -1560 1899 123 62 0 chr1 38081268 38081560 -204582793 + AluSx SINE Alu 1 310 -2 4936 174 74 61 chr1 38081560 38081732 -204582621 + Charlie1a DNA MER1_type 1201 1369 -86 555 124 9 53 chr1 38081741 38081757 -204582596 - AluSg/x SINE Alu -1 308 293 1905 101 28 103 chr1 38081757 38081938 -204582415 - L1MA2 LINE L1 0 6304 6168 2208 98 3 17 chr1 38081938 38082235 -204582118 - AluSp SINE Alu -20 293 1 1905 101 28 103 chr1 38082235 38082450 -204581903 - L1MA2 LINE L1 -136 6168 5938 555 124 9 53 chr1 38082450 38082546 -204581807 - AluSg/x SINE Alu -16 293 201 516 117 0 78 chr1 38082694 38082805 -204581548 - L1 LINE L1 -1903 4243 4142 264 77 0 0 chr1 38082819 38082858 -204581495 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2076 111 7 0 chr1 38082861 38083141 -204581212 - AluSq SINE Alu -31 282 1 270 204 0 0 chr1 38083143 38083197 -204581156 + Charlie1a DNA MER1_type 1398 1451 -4 202 309 62 0 chr1 38083242 38083289 -204581064 - L2 LINE L2 -609 2705 2662 210 37 0 0 chr1 38083289 38083316 -204581037 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 202 309 62 0 chr1 38083316 38083365 -204580988 - L2 LINE L2 -652 2662 2603 531 286 141 60 chr1 38083431 38083664 -204580689 + L1MC4a LINE L1 5423 5636 -2172 279 0 0 0 chr1 38083664 38083695 -204580658 + (TA)n Simple_repeat Simple_repeat 1 31 0 531 286 141 60 chr1 38083695 38083855 -204580498 + L1MC4a LINE L1 5636 5782 -2026 1517 201 3 20 chr1 38083855 38084148 -204580205 + AluJb SINE Alu 1 288 -24 531 286 141 60 chr1 38084148 38084221 -204580132 + L1MC4a LINE L1 5782 5928 -1880 2473 62 0 38 chr1 38084232 38084552 -204579801 + AluY SINE Alu 1 308 -3 390 21 0 0 chr1 38084560 38084607 -204579746 + (TG)n Simple_repeat Simple_repeat 2 48 0 1766 133 3 58 chr1 38085185 38085479 -204578874 - AluJo SINE Alu -25 287 10 460 179 49 16 chr1 38085539 38085662 -204578691 - MIR SINE MIR -83 179 53 1769 141 8 0 chr1 38085674 38085937 -204578416 - AluSx SINE Alu -6 306 42 415 270 29 46 chr1 38085951 38086125 -204578228 + MIR3 SINE MIR 1 171 -37 1818 151 14 7 chr1 38086230 38086549 -204577804 + AluSx SINE Alu 1 321 0 2339 77 0 27 chr1 38086586 38086885 -204577468 - AluSc SINE Alu -18 291 1 476 209 108 8 chr1 38087050 38087179 -204577174 - FLAM_C SINE Alu 0 143 2 2514 62 0 3 chr1 38087525 38087830 -204576523 + AluY SINE Alu 1 304 -7 1860 180 3 0 chr1 38088075 38088381 -204575972 - AluJo SINE Alu -4 308 2 1799 187 15 12 chr1 38088438 38088781 -204575572 + MLT1E1 LTR MaLR 1 344 -310 657 156 18 0 chr1 38088785 38088917 -204575436 + AluSg/x SINE Alu 171 304 0 935 221 17 0 chr1 38088917 38089089 -204575264 + MLT1E1 LTR MaLR 339 513 -141 1694 123 0 0 chr1 38089126 38089353 -204575000 + AluSx SINE Alu 1 227 -85 767 116 16 8 chr1 38089453 38089597 -204574756 + AluY SINE Alu 161 305 0 935 221 17 0 chr1 38089597 38089769 -204574584 + MLT1E1 LTR MaLR 339 513 -141 2218 108 14 0 chr1 38089806 38090102 -204574251 + AluSx SINE Alu 1 300 -12 318 26 0 0 chr1 38090114 38090153 -204574200 + (TG)n Simple_repeat Simple_repeat 2 40 0 1147 244 145 41 chr1 38090174 38090539 -204573814 - MLT1H LTR MaLR -13 536 134 2357 211 16 2 chr1 38090541 38091047 -204573306 + L1ME2 LINE L1 5652 6164 0 183 241 241 0 chr1 38091122 38091205 -204573148 + MIR SINE MIR 70 172 -90 4506 151 24 109 chr1 38091206 38091244 -204573109 - L1MB3 LINE L1 0 6183 6143 2263 119 3 3 chr1 38091244 38091556 -204572797 + AluSx SINE Alu 1 312 0 4506 151 24 109 chr1 38091556 38091868 -204572485 - L1MB3 LINE L1 -40 6143 5806 2329 92 6 19 chr1 38091868 38092183 -204572170 - AluSq SINE Alu -2 311 1 4506 151 24 109 chr1 38092183 38092709 -204571644 - L1MB3 LINE L1 -377 5806 5237 2333 107 0 3 chr1 38092709 38093018 -204571335 - AluSx SINE Alu -4 308 1 1976 128 13 32 chr1 38093028 38093340 -204571013 - AluSx SINE Alu -6 306 1 4506 151 24 109 chr1 38093340 38093352 -204571001 - L1MB3 LINE L1 -955 5228 5217 2418 96 0 6 chr1 38093352 38093664 -204570689 - AluSg SINE Alu 0 310 1 4506 151 24 109 chr1 38093664 38093879 -204570474 - L1MB3 LINE L1 -966 5217 4985 1751 183 3 0 chr1 38093879 38094164 -204570189 - AluJb SINE Alu -23 289 4 4506 151 24 109 chr1 38094164 38094193 -204570160 - L1MB3 LINE L1 -1198 4985 5175 770 139 0 76 chr1 38094193 38094337 -204570016 - FLAM_C SINE Alu 0 133 1 4506 151 24 109 chr1 38094337 38094477 -204569876 - L1MB3 LINE L1 -1007 5176 5026 2527 47 10 7 chr1 38094477 38094778 -204569575 + AluY SINE Alu 1 302 -9 2041 73 45 42 chr1 38094907 38095193 -204569160 - AluSc SINE Alu -22 287 1 4467 203 19 63 chr1 38095193 38095757 -204568596 - L1MB3 LINE L1 -1190 4956 4368 1492 121 0 0 chr1 38095757 38096001 -204568352 - AluSg/x SINE Alu 0 312 89 4467 203 19 63 chr1 38096001 38096498 -204567855 - L1MB3 LINE L1 -1778 4368 3949 1878 155 7 17 chr1 38096498 38096795 -204567558 + AluJb SINE Alu 1 294 -18 4467 203 19 63 chr1 38096795 38096900 -204567453 - L1MB3 LINE L1 -2197 3949 3841 1030 185 0 0 chr1 38096918 38097091 -204567262 - FRAM SINE Alu -3 173 1 332 169 0 46 chr1 38097094 38097159 -204567194 - L1MB3 LINE L1 -2298 3848 3787 863 237 12 0 chr1 38097191 38097360 -204566993 + FAM SINE Alu 5 175 0 306 172 35 11 chr1 38097360 38097440 -204566913 + GA-rich Low_complexity Low_complexity 7 91 0 195 42 0 0 chr1 38097440 38097464 -204566889 + (CAAG)n Simple_repeat Simple_repeat 2 25 0 2389 208 21 51 chr1 38097464 38097648 -204566705 + MLT2B3 LTR ERVL 56 244 -310 2697 39 0 3 chr1 38097648 38097960 -204566393 - AluY SINE Alu 0 311 1 2389 208 21 51 chr1 38097960 38098289 -204566064 + MLT2B3 LTR ERVL 244 554 0 1954 192 25 102 chr1 38098290 38098958 -204565395 - L1MB3 LINE L1 -2352 3794 3178 35 41 0 0 chr1 38099050 38099099 -204565254 + AT_rich Low_complexity Low_complexity 1 49 0 2124 101 4 0 chr1 38099215 38099491 -204564862 + AluSx SINE Alu 1 277 -35 1056 101 16 53 chr1 38099608 38099746 -204564607 + L1MB3 LINE L1 6001 6132 -51 2429 48 7 7 chr1 38099746 38100041 -204564312 + AluY SINE Alu 1 295 -16 1056 101 16 53 chr1 38100041 38100091 -204564262 + L1MB3 LINE L1 6132 6182 -1 2324 72 0 78 chr1 38100103 38100437 -204563916 + AluSg SINE Alu 3 310 0 299 240 0 0 chr1 38100443 38100519 -204563834 + L1ME3A LINE L1 6092 6169 -1 846 179 92 123 chr1 38100530 38100830 -204563523 + L1ME LINE L1 5514 5793 -328 1471 107 10 0 chr1 38100831 38101027 -204563326 + AluSq SINE Alu 2 199 -114 1127 153 14 69 chr1 38101415 38101518 -204562835 - LTR47A LTR ERVL 0 452 366 867 183 6 57 chr1 38101518 38101693 -204562660 - FRAM SINE Alu 0 166 1 1127 153 14 69 chr1 38101693 38101805 -204562548 - LTR47A LTR ERVL -86 366 249 1321 152 87 4 chr1 38101961 38102191 -204562162 - LTR47A LTR ERVL -203 249 1 185 189 27 0 chr1 38102337 38102374 -204561979 + MIR SINE MIR 218 255 -7 2128 149 0 110 chr1 38102419 38102751 -204561602 - MLT2D LTR ERVL 0 414 146 2074 125 0 14 chr1 38102751 38103039 -204561314 - AluSx SINE Alu -28 284 1 2128 149 0 110 chr1 38103039 38103170 -204561183 - MLT2D LTR ERVL -268 146 2 1011 165 31 10 chr1 38103310 38103504 -204560849 - AluJb SINE Alu 0 312 115 230 308 87 19 chr1 38103921 38104025 -204560328 + Charlie8 DNA MER1_type 2 112 -2305 1759 156 62 29 chr1 38104025 38104073 -204560280 + L1MB8 LINE L1 5779 5824 -354 2198 95 7 20 chr1 38104073 38104377 -204559976 + AluSc SINE Alu 1 300 -9 1759 156 62 29 chr1 38104377 38104637 -204559716 + L1MB8 LINE L1 5824 6106 -72 2090 136 3 0 chr1 38104637 38104932 -204559421 + AluSx SINE Alu 9 304 -8 1759 156 62 29 chr1 38104932 38105002 -204559351 + L1MB8 LINE L1 6106 6172 -6 2908 116 25 2 chr1 38105016 38105463 -204558890 + L1MB2 LINE L1 5636 6092 -79 198 0 0 0 chr1 38105463 38105485 -204558868 + (T)n Simple_repeat Simple_repeat 1 22 0 265 244 85 0 chr1 38105636 38105718 -204558635 + L2 LINE L2 3225 3313 0 576 149 0 0 chr1 38105899 38105986 -204558367 - AluS SINE Alu -225 88 2 312 315 251 3 chr1 38105987 38106282 -204558071 + L2 LINE L2 2326 2693 -621 495 132 0 0 chr1 38106282 38106376 -204557977 - AluS SINE Alu 0 315 222 419 314 14 88 chr1 38106379 38106576 -204557777 + L2 LINE L2 2702 2871 -443 2563 66 0 0 chr1 38106576 38106878 -204557475 - AluY SINE Alu 0 311 10 419 314 14 88 chr1 38106878 38106976 -204557377 + L2 LINE L2 2871 2975 -339 603 92 0 0 chr1 38107227 38107314 -204557039 - Alu SINE Alu 0 310 224 1087 137 0 0 chr1 38107314 38107460 -204556893 - AluSq/x SINE Alu -166 146 1 276 248 232 8 chr1 38107460 38107585 -204556768 + L2 LINE L2 3161 3313 0 1480 199 0 36 chr1 38107730 38108032 -204556321 + AluJo SINE Alu 1 291 -21 2178 110 0 0 chr1 38108184 38108505 -204555848 - AluSx SINE Alu 0 321 1 700 186 65 0 chr1 38108614 38108738 -204555615 - FLAM_A SINE Alu -1 132 1 365 329 117 30 chr1 38108793 38109379 -204554974 + L2 LINE L2 2594 3225 -47 220 139 0 23 chr1 38110293 38110336 -204554017 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 876 108 0 0 chr1 38110661 38110791 -204553562 + (TA)n Simple_repeat Simple_repeat 1 130 0 311 340 85 16 chr1 38110855 38111161 -204553192 + L1M4 LINE L1 5040 5366 -780 279 133 0 0 chr1 38111285 38111330 -204553023 + (TCTCCC)n Simple_repeat Simple_repeat 4 48 0 189 283 0 0 chr1 38111351 38111397 -204552956 - L2 LINE L2 0 3272 3227 394 247 11 0 chr1 38111598 38111687 -204552666 + MER91B DNA MER1_type 91 180 -10 314 291 170 28 chr1 38111779 38111961 -204552392 - MIR SINE MIR -54 208 1 1958 119 38 10 chr1 38112256 38112549 -204551804 + AluSx SINE Alu 1 301 -11 200 31 62 0 chr1 38112550 38112582 -204551771 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1804 145 10 21 chr1 38112626 38112825 -204551528 + AluJb SINE Alu 1 198 -114 2496 209 162 35 chr1 38112825 38113558 -204550795 - LTR1B LTR ERV1 0 826 1 1804 145 10 21 chr1 38113558 38113647 -204550706 + AluJb SINE Alu 198 286 -26 351 113 0 0 chr1 38113648 38113701 -204550652 + (CA)n Simple_repeat Simple_repeat 2 54 0 2120 142 0 0 chr1 38113819 38114115 -204550238 + AluSx SINE Alu 1 296 -16 259 208 0 0 chr1 38114115 38114163 -204550190 + AluJ/monomer SINE Alu 1 48 -254 1155 153 37 41 chr1 38114267 38114449 -204549904 + LTR2B LTR ERV1 250 432 -58 2646 46 0 3 chr1 38114449 38114752 -204549601 - AluY SINE Alu -8 303 2 1155 153 37 41 chr1 38114752 38114811 -204549542 + LTR2B LTR ERV1 432 490 0 4059 71 36 29 chr1 38114811 38115390 -204548963 + Harlequin LTR ERV1 1 583 -6313 1226 268 85 20 chr1 38116045 38116537 -204547816 - L1MC4a LINE L1 -1892 5916 5393 467 476 42 39 chr1 38116541 38116850 -204547503 + AluJo SINE Alu 3 312 0 1606 156 7 78 chr1 38116884 38117016 -204547337 + AluJo SINE Alu 6 146 -166 1836 128 27 40 chr1 38117016 38117314 -204547039 - AluSg SINE Alu -16 294 1 1606 156 7 78 chr1 38117314 38117489 -204546864 + AluJo SINE Alu 146 291 -21 656 174 33 144 chr1 38117492 38117570 -204546783 + L1ME2 LINE L1 5821 5906 -258 2192 101 0 0 chr1 38117570 38117846 -204546507 + AluSg1 SINE Alu 1 276 -33 249 33 0 0 chr1 38117846 38117876 -204546477 + (CA)n Simple_repeat Simple_repeat 1 30 0 656 174 33 144 chr1 38117876 38118066 -204546287 + L1ME2 LINE L1 5904 6060 -104 1425 136 94 45 chr1 38118069 38118377 -204545976 + MER65A LTR ERV1 1 323 -122 31 0 0 0 chr1 38118668 38118699 -204545654 + AT_rich Low_complexity Low_complexity 1 31 0 826 138 17 0 chr1 38118897 38119013 -204545340 - AluJb SINE Alu -188 124 7 2051 125 0 17 chr1 38119022 38119345 -204545008 - AluSx SINE Alu 0 318 1 2065 145 0 0 chr1 38119494 38119791 -204544562 + AluSx SINE Alu 1 297 -15 1710 163 17 7 chr1 38119959 38120254 -204544099 - AluJb SINE Alu -14 298 1 2024 115 34 3 chr1 38120258 38120553 -204543800 - AluSq SINE Alu -9 304 1 739 75 150 33 chr1 38120872 38120992 -204543361 - AluSq/x SINE Alu -175 137 4 2391 63 7 0 chr1 38121118 38121404 -204542949 - AluY SINE Alu -22 289 2 868 260 109 23 chr1 38121405 38121755 -204542598 - L2 LINE L2 -1171 2143 1764 2059 134 7 16 chr1 38121758 38122065 -204542288 + AluSx SINE Alu 1 304 -8 2093 121 3 23 chr1 38122065 38122369 -204541984 + AluSg SINE Alu 1 299 -11 666 62 0 0 chr1 38122542 38122623 -204541730 - HY3 scRNA scRNA -20 81 1 215 363 38 19 chr1 38122625 38122785 -204541568 - L2 LINE L2 -1767 1547 1385 2319 95 0 3 chr1 38122785 38123081 -204541272 + AluSx SINE Alu 1 295 -17 358 255 48 58 chr1 38123113 38123321 -204541032 - L2 LINE L2 -2416 898 693 2021 118 28 3 chr1 38123322 38123610 -204540743 - AluSc SINE Alu -14 295 1 1050 78 8 0 chr1 38123612 38123741 -204540612 - AluSq/x SINE Alu -181 132 3 531 191 22 96 chr1 38123742 38123878 -204540475 + AluJb SINE Alu 186 311 -1 2283 81 3 19 chr1 38124262 38124569 -204539784 - AluSq SINE Alu -11 302 1 319 202 18 119 chr1 38125177 38125245 -204539108 + MER5A DNA MER1_type 9 64 -125 1730 143 79 4 chr1 38125245 38125525 -204538828 + AluSx SINE Alu 1 301 -11 319 202 18 119 chr1 38125525 38125565 -204538788 + MER5A DNA MER1_type 64 106 -83 280 222 86 0 chr1 38125672 38125753 -204538600 + MIR SINE MIR 175 262 0 1657 86 9 14 chr1 38125988 38126209 -204538144 - AluSg SINE Alu -90 220 1 1071 81 0 7 chr1 38126210 38126346 -204538007 - AluSq/x SINE Alu -178 135 1 228 224 0 0 chr1 38127363 38127461 -204536892 + (CCG)n Simple_repeat Simple_repeat 3 100 0 31 0 0 0 chr1 38127908 38127939 -204536414 + GC_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr1 38128077 38128116 -204536237 + GC_rich Low_complexity Low_complexity 1 39 0 1875 128 22 0 chr1 38129934 38130208 -204534145 - AluSx SINE Alu -32 280 1 2063 131 0 7 chr1 38130216 38130521 -204533832 - AluSq SINE Alu -10 303 1 1945 141 10 13 chr1 38131215 38131513 -204532840 - AluSx SINE Alu -15 297 1 1202 159 198 31 chr1 38131514 38131772 -204532581 - AluJo SINE Alu -1 301 1 2132 118 6 6 chr1 38132426 38132739 -204531614 - AluSq SINE Alu 0 313 1 207 0 0 0 chr1 38133246 38133269 -204531084 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 192 158 0 0 chr1 38135917 38135955 -204528398 + T-rich Low_complexity Low_complexity 1 38 0 2359 72 10 3 chr1 38136671 38136962 -204527391 + AluSg SINE Alu 1 293 -17 224 333 39 0 chr1 38140315 38140393 -204523960 + L2 LINE L2 3098 3178 -94 2358 80 0 29 chr1 38140398 38140712 -204523641 - AluSc SINE Alu -4 305 1 476 209 108 8 chr1 38140877 38141006 -204523347 - FLAM_C SINE Alu 0 143 2 2506 62 0 3 chr1 38141352 38141656 -204522697 + AluY SINE Alu 1 303 -8 1121 216 0 4 chr1 38141901 38142128 -204522225 - AluJo SINE Alu -4 308 83 464 132 15 0 chr1 38142381 38142449 -204521904 - AluSq/x SINE Alu -195 118 50 2028 149 0 0 chr1 38142721 38143009 -204521344 - AluSx SINE Alu -24 288 1 7513 87 39 29 chr1 38143010 38143254 -204521099 - MER4-int LTR ERV1 -128 6470 6230 2229 110 13 0 chr1 38143254 38143553 -204520800 + AluSp SINE Alu 1 303 -10 7513 87 39 29 chr1 38143553 38144245 -204520108 - MER4-int LTR ERV1 -368 6230 5517 2326 92 10 0 chr1 38144245 38144537 -204519816 - AluY SINE Alu -16 295 1 7513 87 39 29 chr1 38144537 38144755 -204519598 - MER4-int LTR ERV1 -1081 5517 5303 886 159 115 0 chr1 38144767 38144924 -204519429 - AluSq SINE Alu -2 311 137 918 78 8 8 chr1 38144927 38145056 -204519297 - MER4-int LTR ERV1 -5477 1121 993 375 135 0 77 chr1 38145054 38145195 -204519158 - MER4-int LTR ERV1 -5712 886 687 * 1901 138 35 73 chr1 38145220 38145810 -204518543 - MER4-int LTR ERV1 -5789 809 98 1230 132 0 37 chr1 38145914 38146103 -204518250 + AluSg/x SINE Alu 114 295 -15 2346 96 0 0 chr1 38146113 38146414 -204517939 + AluSx SINE Alu 1 301 -11 1691 168 36 7 chr1 38146422 38146725 -204517628 - AluJb SINE Alu 0 312 1 200 253 11 126 chr1 38146780 38146828 -204517525 + L2 LINE L2 2265 2301 -1013 2055 44 56 11 chr1 38146828 38147127 -204517226 + AluY SINE Alu 1 311 0 200 253 11 126 chr1 38147127 38147164 -204517189 + L2 LINE L2 2301 2341 -973 228 114 29 0 chr1 38147169 38147204 -204517149 - Alu SINE Alu -85 217 182 2370 85 3 3 chr1 38147383 38147677 -204516676 - AluSp SINE Alu -19 294 1 964 106 43 0 chr1 38147799 38147940 -204516413 - L1PA7 LINE L1 0 6154 6008 2531 50 0 7 chr1 38148136 38148435 -204515918 + AluY SINE Alu 1 297 -14 1277 82 0 0 chr1 38148446 38148604 -204515749 + AluY SINE Alu 150 307 -4 366 200 0 0 chr1 38149079 38149139 -204515214 + U4 snRNA snRNA 1 60 -85 2119 132 0 6 chr1 38149230 38149541 -204514812 + AluSg SINE Alu 1 309 -1 477 161 0 0 chr1 38149826 38149913 -204514440 + (CA)n Simple_repeat Simple_repeat 2 88 0 2188 102 0 0 chr1 38149913 38150198 -204514155 - AluSg SINE Alu -25 285 1 1735 120 0 4 chr1 38150264 38150506 -204513847 - AluSg1 SINE Alu -18 291 51 3035 173 52 83 chr1 38150629 38151435 -204512918 - Charlie1a DNA MER1_type -531 924 144 1139 205 66 4 chr1 38151451 38151695 -204512658 - L1MB5 LINE L1 -8 6166 5908 266 157 0 59 chr1 38151700 38151751 -204512602 - Alu SINE Alu -15 287 240 1547 156 3 25 chr1 38151752 38152035 -204512318 - L1MB5 LINE L1 -277 5897 5621 480 179 186 97 chr1 38152035 38152180 -204512173 - Charlie1a DNA MER1_type -1297 158 1 758 214 0 23 chr1 38152294 38152425 -204511928 + FLAM_A SINE Alu 1 128 -5 22 56 0 0 chr1 38153428 38153464 -204510889 + AT_rich Low_complexity Low_complexity 1 36 0 2397 89 0 16 chr1 38153465 38153780 -204510573 - AluY SINE Alu -1 310 1 1008 184 0 0 chr1 38153783 38153941 -204510412 - AluJo/FRAM SINE Alu -8 294 137 1310 177 40 4 chr1 38153943 38154191 -204510162 - AluJo SINE Alu 0 312 56 1766 148 16 23 chr1 38154348 38154652 -204509701 - AluJo SINE Alu -8 304 3 2485 64 0 13 chr1 38155769 38156083 -204508270 - AluY SINE Alu -1 310 1 1229 189 13 4 chr1 38156572 38156805 -204507548 - Zaphod DNA AcHobo -8 4023 3789 644 233 42 21 chr1 38156797 38156986 -204507367 - Zaphod DNA AcHobo -588 3443 3251 * 904 158 0 7 chr1 38157038 38157184 -204507169 - AluSc SINE Alu -9 300 156 807 231 39 5 chr1 38157185 38157393 -204506960 - Zaphod DNA AcHobo -782 3249 3035 1996 123 3 17 chr1 38157418 38157718 -204506635 - AluSg1 SINE Alu -13 296 1 2132 120 7 10 chr1 38157718 38158027 -204506326 - AluSx SINE Alu -4 308 1 1161 134 0 6 chr1 38158162 38158334 -204506019 - AluSp SINE Alu -14 299 129 1063 195 11 50 chr1 38158616 38158898 -204505455 - AluSx SINE Alu -41 271 1 1962 119 21 3 chr1 38158912 38159265 -204505088 - AluSx SINE Alu 0 375 18 2093 104 10 3 chr1 38159643 38159952 -204504401 - AluSx SINE Alu 0 312 1 33 43 0 0 chr1 38160787 38160834 -204503519 + AT_rich Low_complexity Low_complexity 1 47 0 1889 151 21 7 chr1 38160928 38161219 -204503134 + AluJo SINE Alu 1 295 -17 1825 148 65 0 chr1 38161583 38161874 -204502479 + AluSx SINE Alu 1 310 -2 277 316 86 11 chr1 38161874 38162048 -204502305 + MER117 DNA MER1_type 1 187 -10 25 0 0 0 chr1 38162143 38162168 -204502185 + AT_rich Low_complexity Low_complexity 1 25 0 2323 106 3 0 chr1 38162390 38162693 -204501660 + AluSg SINE Alu 1 304 -6 1259 141 21 5 chr1 38162700 38162891 -204501462 + AluJo SINE Alu 1 194 -118 722 89 20 10 chr1 38162891 38162992 -204501361 - AluSp/q SINE Alu -14 299 198 488 146 11 0 chr1 38163107 38163196 -204501157 + CT-rich Low_complexity Low_complexity 2 91 0 830 186 0 0 chr1 38163208 38163332 -204501021 - AluJb SINE Alu -187 125 2 295 146 73 0 chr1 38163332 38163387 -204500966 - MLT1C-int LTR MaLR -1312 59 1 1550 226 81 34 chr1 38163387 38163833 -204500520 - MLT1C LTR MaLR 0 467 1 27 29 0 0 chr1 38163860 38163894 -204500459 + AT_rich Low_complexity Low_complexity 1 34 0 2289 95 0 0 chr1 38163898 38164194 -204500159 + AluY SINE Alu 1 296 -15 907 174 3 37 chr1 38164235 38164538 -204499815 + L1MA7 LINE L1 5874 6279 -12 220 27 54 0 chr1 38164548 38164585 -204499768 + (TA)n Simple_repeat Simple_repeat 1 39 0 2363 158 93 7 chr1 38164587 38165049 -204499304 - L1MB4 LINE L1 -33 6147 5646 920 206 50 63 chr1 38165053 38165396 -204498957 + MSTB2 LTR MaLR 5 457 0 2165 162 17 127 chr1 38165396 38165451 -204498902 - L1MB4 LINE L1 -530 5650 5591 1774 191 0 0 chr1 38165451 38165755 -204498598 - AluJb SINE Alu -8 304 1 2165 162 17 127 chr1 38165755 38165887 -204498466 - L1MB4 LINE L1 -589 5591 5446 1784 137 0 55 chr1 38165887 38166180 -204498173 - AluSx SINE Alu 0 312 36 2165 162 17 127 chr1 38166180 38166227 -204498126 - L1MB4 LINE L1 -734 5446 5395 2507 71 3 3 chr1 38166227 38166537 -204497816 - AluY SINE Alu -1 310 1 2165 162 17 127 chr1 38166537 38166861 -204497492 - L1MB4 LINE L1 -785 5395 5198 2855 19 0 0 chr1 38166861 38167176 -204497177 - AluYb8 SINE Alu -3 315 1 2165 162 17 127 chr1 38167176 38167496 -204496857 - L1MB4 LINE L1 -982 5198 4844 1399 212 21 75 chr1 38167500 38167887 -204496466 - MLT1A2 LTR MaLR -8 366 1 1741 216 26 16 chr1 38167892 38168322 -204496031 - L1MB4 LINE L1 -1303 4843 4410 * 2131 233 16 31 chr1 38168320 38168375 -204495978 + L1 LINE L1 3843 3897 -2249 1356 143 143 78 chr1 38168375 38168697 -204495656 - MER2 DNA MER2_type 0 344 2 2131 233 16 31 chr1 38168697 38169221 -204495132 + L1 LINE L1 3897 4413 -1733 517 285 17 17 chr1 38169228 38169400 -204494953 - L1MC5 LINE L1 -1095 6866 6695 1465 165 29 70 chr1 38169496 38169811 -204494542 - AluJo SINE Alu -10 302 1 871 124 0 29 chr1 38170100 38170237 -204494116 - FLAM_C SINE Alu -1 142 10 217 0 0 57 chr1 38170464 38170499 -204493854 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2219 97 0 0 chr1 38170505 38170783 -204493570 - AluSg SINE Alu -32 278 1 458 171 24 0 chr1 38170785 38170867 -204493486 - AluJ/FRAM SINE Alu -13 299 216 220 350 142 16 chr1 38170874 38171057 -204493296 + L2 LINE L2 2381 2586 -728 191 320 120 0 chr1 38171838 38171913 -204492440 - L2 LINE L2 0 3272 3189 657 272 141 10 chr1 38172086 38172376 -204491977 - L2 LINE L2 -606 2708 2381 1206 206 14 9 chr1 38172479 38172697 -204491656 - MER20 DNA MER1_type 0 219 1 2015 136 0 0 chr1 38172824 38173145 -204491208 - AluSx SINE Alu 0 323 3 1861 137 24 10 chr1 38173319 38173611 -204490742 - AluJo SINE Alu -16 296 1 702 156 16 8 chr1 38173612 38173740 -204490613 + L1MB8 LINE L1 6045 6173 -5 523 246 18 0 chr1 38173841 38173976 -204490377 - L1ME1 LINE L1 0 6184 6039 331 189 78 22 chr1 38173976 38174066 -204490287 - L1ME1 LINE L1 -484 5682 5598 * 470 152 71 0 chr1 38174061 38174160 -204490193 - L1ME1 LINE L1 -842 5304 5199 391 196 0 72 chr1 38174163 38174260 -204490093 - FLAM_A SINE Alu -2 131 42 538 136 19 10 chr1 38174260 38174363 -204489990 - L1ME1 LINE L1 -951 5195 5092 2215 107 17 7 chr1 38174514 38174814 -204489539 - AluSq SINE Alu -10 303 1 1894 165 0 13 chr1 38175059 38175368 -204488985 - 7SLRNA srpRNA srpRNA -5 315 11 2090 120 0 7 chr1 38175387 38175678 -204488675 - AluSx SINE Alu -22 290 2 1834 172 0 14 chr1 38175884 38176180 -204488173 - AluJo SINE Alu -15 297 6 2093 123 0 10 chr1 38176195 38176497 -204487856 - AluSx SINE Alu -13 299 1 2136 86 57 0 chr1 38176750 38177030 -204487323 + AluY SINE Alu 1 296 -15 240 277 42 34 chr1 38177163 38177282 -204487071 + L1M4 LINE L1 4497 4616 -1530 1179 284 90 35 chr1 38177877 38178356 -204485997 - L2 LINE L2 -5 3308 2804 877 180 73 22 chr1 38178361 38178539 -204485814 - MER20 DNA MER1_type -30 189 3 1233 274 75 22 chr1 38178547 38179054 -204485299 - HERVL LTR ERVL -3111 1885 1347 364 291 72 64 chr1 38179348 38179613 -204484740 - HERVL LTR ERVL -4731 1033 767 269 304 0 0 chr1 38179625 38179704 -204484649 - HERVL LTR ERVL -5036 618 540 2376 102 0 3 chr1 38179721 38180035 -204484318 - AluSq SINE Alu 0 313 1 236 109 0 22 chr1 38180047 38180093 -204484260 - Alu SINE Alu 0 302 258 287 303 50 0 chr1 38180093 38180192 -204484161 - HERVL LTR ERVL -5197 567 464 627 154 185 99 chr1 38180219 38180381 -204483972 + AluJb SINE Alu 124 299 -13 806 166 43 111 chr1 38180779 38181032 -204483321 - LTR41 LTR ERVL -17 756 521 1026 189 5 25 chr1 38181111 38181307 -204483046 + AluJb SINE Alu 99 290 -22 874 194 26 11 chr1 38181546 38181744 -204482609 - LTR41 LTR ERVL -564 231 5 4347 240 64 66 chr1 38181749 38181922 -204482431 - L1MEc LINE L1 -4588 1808 1636 840 212 0 0 chr1 38181922 38182054 -204482299 - FLAM_A SINE Alu 0 133 2 4347 240 64 66 chr1 38182054 38182158 -204482195 - L1MEc LINE L1 -4760 1636 1533 3763 106 30 126 chr1 38182158 38182673 -204481680 - MER51A LTR ERV1 0 634 202 2301 97 0 3 chr1 38182673 38182982 -204481371 - AluY SINE Alu -2 309 2 3763 106 30 126 chr1 38182982 38183167 -204481186 - MER51A LTR ERV1 -432 202 1 4347 240 64 66 chr1 38183167 38184153 -204480200 - L1MEc LINE L1 -4863 1533 547 2134 131 3 0 chr1 38184153 38184451 -204479902 + AluSx SINE Alu 1 299 -13 4347 240 64 66 chr1 38184451 38184966 -204479387 - L1MEc LINE L1 -5849 547 32 365 257 9 106 chr1 38185003 38185089 -204479264 + MER58 DNA MER1_type 1 75 -140 1725 152 9 35 chr1 38185089 38185267 -204479086 - AluJb SINE Alu -5 307 139 2443 88 0 0 chr1 38185267 38185573 -204478780 - AluY SINE Alu -5 306 1 1725 152 9 35 chr1 38185573 38185709 -204478644 - AluJb SINE Alu -173 139 1 365 257 9 106 chr1 38185709 38185735 -204478618 + MER58 DNA MER1_type 75 102 -113 906 217 0 0 chr1 38185963 38186115 -204478238 - FRAM SINE Alu -14 152 1 1438 102 0 39 chr1 38186136 38186342 -204478011 - AluSc SINE Alu -111 198 1 1684 73 0 0 chr1 38186595 38186815 -204477538 - HERVH LTR ERV1 -7493 220 1 2965 87 92 5 chr1 38186817 38187229 -204477124 - LTR7 LTR ERV1 -2 448 1 24682 57 15 13 chr1 38187229 38190031 -204474322 - HERVH LTR ERV1 -1457 5439 2629 2511 84 3 0 chr1 38190031 38190341 -204474012 + AluSp SINE Alu 1 311 -2 24682 57 15 13 chr1 38190341 38190630 -204473723 - HERVH LTR ERV1 -4267 2629 2342 412 70 91 7 chr1 38193212 38193355 -204470998 + (TA)n Simple_repeat Simple_repeat 2 156 0 2251 113 0 0 chr1 38193364 38193666 -204470687 + AluSx SINE Alu 1 302 -10 203 328 0 30 chr1 38194771 38194838 -204469515 - L2 LINE L2 -17 3255 3191 2153 125 0 10 chr1 38194888 38195193 -204469160 - AluSx SINE Alu -10 302 1 26 50 0 0 chr1 38195322 38195362 -204468991 + AT_rich Low_complexity Low_complexity 1 40 0 2260 113 0 3 chr1 38195794 38196095 -204468258 + AluSq SINE Alu 1 300 -13 1679 148 13 46 chr1 38196517 38196822 -204467531 + AluJb SINE Alu 6 300 -12 1740 161 10 23 chr1 38196832 38197142 -204467211 + AluJb SINE Alu 1 306 -6 2242 108 3 7 chr1 38197190 38197496 -204466857 + AluSx SINE Alu 1 305 -7 30 0 0 0 chr1 38197695 38197725 -204466628 + AT_rich Low_complexity Low_complexity 1 30 0 1597 85 0 9 chr1 38197825 38198036 -204466317 + AluSg/x SINE Alu 91 299 -13 1018 116 236 112 chr1 38198199 38198449 -204465904 - MER4A LTR ERV1 -123 541 261 616 113 21 10 chr1 38198449 38198546 -204465807 - MER4A LTR ERV1 -566 98 1 655 169 157 0 chr1 38198770 38198948 -204465405 - L1MB4 LINE L1 -32 6148 5943 2071 181 100 31 chr1 38198950 38199408 -204464945 - LTR2B LTR ERV1 0 490 1 4439 58 0 6 chr1 38199408 38199957 -204464396 - Harlequin LTR ERV1 0 6896 6351 332 47 23 0 chr1 38199957 38200000 -204464353 + LTR7 LTR ERV1 1 44 -406 1962 135 59 3 chr1 38200004 38200344 -204464009 - HERVH LTR ERV1 -33 7680 7322 1375 139 19 0 chr1 38200342 38200558 -204463795 - HERVH LTR ERV1 -1894 5819 5600 * 8558 101 2 10 chr1 38200559 38202647 -204461706 - HERVH LTR ERV1 -2564 5149 3140 * 15442 114 2 10 chr1 38202626 38204923 -204459430 - HERVH LTR ERV1 -4718 2995 718 2040 126 0 3 chr1 38205360 38205661 -204458692 - AluSx SINE Alu -11 301 2 1177 174 4 21 chr1 38205875 38206116 -204458237 - AluSx SINE Alu -75 237 1 922 86 0 0 chr1 38206521 38206637 -204457716 + AluSg SINE Alu 1 116 -194 1439 118 0 42 chr1 38206637 38206875 -204457478 + AluY SINE Alu 68 295 -16 1923 132 7 7 chr1 38206995 38207298 -204457055 - AluSq SINE Alu -10 303 1 2018 117 3 3 chr1 38207335 38207633 -204456720 + AluSp SINE Alu 1 298 -15 2142 102 10 10 chr1 38207635 38207940 -204456413 + AluSq SINE Alu 1 305 -8 1918 66 74 0 chr1 38208119 38208390 -204455963 + AluY SINE Alu 1 291 -20 568 249 228 5 chr1 38208518 38208711 -204455642 - MIR SINE MIR -24 238 3 1965 132 7 7 chr1 38208785 38209081 -204455272 + AluSx SINE Alu 1 296 -16 1837 119 7 26 chr1 38209392 38209695 -204454658 + AluSx SINE Alu 3 299 -13 1243 153 15 0 chr1 38210184 38210386 -204453967 + AluJo SINE Alu 88 292 -20 2249 55 0 7 chr1 38210942 38211258 -204453095 + AluY SINE Alu 1 314 0 1857 143 79 16 chr1 38212161 38212476 -204451877 - MER6 DNA MER2_type -530 335 1 1790 113 10 20 chr1 38212789 38213081 -204451272 + AluSx SINE Alu 3 291 -21 388 220 73 0 chr1 38213219 38213328 -204451025 - L1MEc LINE L1 -3574 2641 2525 2187 95 3 13 chr1 38213352 38213657 -204450696 - AluSx SINE Alu -10 302 1 1355 206 22 0 chr1 38213673 38213949 -204450404 - AluJb SINE Alu -26 286 5 665 184 14 106 chr1 38213998 38214132 -204450221 - L1MEc LINE L1 -4013 2383 2238 1695 168 3 17 chr1 38214132 38214429 -204449924 + AluJb SINE Alu 1 293 -19 665 184 14 106 chr1 38214429 38214466 -204449887 - L1MEc LINE L1 -4158 2238 2233 1567 134 100 7 chr1 38214466 38214735 -204449618 - AluSq SINE Alu -19 294 1 665 184 14 106 chr1 38214735 38214779 -204449574 - L1MEc LINE L1 -4163 2233 2187 2187 91 0 10 chr1 38214879 38215175 -204449178 - AluSg SINE Alu -17 293 1 659 249 28 61 chr1 38215175 38215388 -204448965 - LTR2 LTR ERV1 -243 206 1 225 250 0 0 chr1 38215390 38215442 -204448911 - L1MB4 LINE L1 -239 5941 5890 1552 107 9 0 chr1 38215460 38215684 -204448669 - AluSg SINE Alu -84 226 1 264 30 0 0 chr1 38215689 38215722 -204448631 + (TA)n Simple_repeat Simple_repeat 2 34 0 1730 88 4 66 chr1 38215762 38216034 -204448319 - AluSq SINE Alu -48 265 11 1931 118 14 7 chr1 38216049 38216346 -204448007 - AluSc SINE Alu -10 299 1 963 167 71 5 chr1 38216348 38216558 -204447795 - L1MB4 LINE L1 -272 5908 5685 * 1642 263 57 9 chr1 38216549 38216717 -204447636 - L1MEc LINE L1 -5450 946 787 1914 140 3 7 chr1 38216717 38217010 -204447343 - AluSx SINE Alu -20 292 1 1642 263 57 9 chr1 38217010 38217370 -204446983 - L1MEc LINE L1 -5609 787 393 479 284 52 86 chr1 38217407 38217484 -204446869 + MER34 LTR ERV1 1 79 -463 1654 147 38 3 chr1 38217484 38217777 -204446576 + AluSx SINE Alu 1 303 -9 479 284 52 86 chr1 38217777 38218099 -204446254 + MER34 LTR ERV1 79 347 -195 2028 112 7 0 chr1 38218099 38218394 -204445959 + AluSx SINE Alu 1 297 -15 479 284 52 86 chr1 38218394 38218550 -204445803 + MER34 LTR ERV1 347 507 -35 1025 220 37 15 chr1 38218597 38218865 -204445488 + L1MCa LINE L1 57 330 -6096 791 158 0 15 chr1 38218872 38219005 -204445348 + FLAM_C SINE Alu 2 132 -11 989 139 0 0 chr1 38219025 38219169 -204445184 + AluSq/x SINE Alu 3 146 -167 2025 84 0 34 chr1 38219169 38219465 -204444888 + AluY SINE Alu 1 286 -25 22 0 0 0 chr1 38219474 38219496 -204444857 + AT_rich Low_complexity Low_complexity 1 22 0 1208 190 15 94 chr1 38219496 38219827 -204444526 + AluJo SINE Alu 1 305 -7 246 175 32 0 chr1 38219829 38219892 -204444461 + L1MA10 LINE L1 6262 6326 -8 784 292 87 37 chr1 38220075 38220397 -204443956 - LTR16C LTR ERVL -2 489 152 252 349 36 0 chr1 38220554 38220637 -204443716 + MIR SINE MIR 13 98 -164 2275 85 7 0 chr1 38220638 38220944 -204443409 - AluSx SINE Alu -4 308 1 220 313 0 0 chr1 38220949 38221013 -204443340 + MIR SINE MIR 182 245 -17 250 275 0 14 chr1 38221053 38221122 -204443231 + MARNA DNA Mariner 342 409 -177 2113 103 0 7 chr1 38221283 38221584 -204442769 + AluSx SINE Alu 1 299 -13 2059 98 13 25 chr1 38221813 38222130 -204442223 + AluSq SINE Alu 1 313 0 3819 61 9 11 chr1 38222131 38222673 -204441680 + Harlequin LTR ERV1 1809 2349 -4547 1672 203 73 48 chr1 38222737 38223136 -204441217 + LTR2 LTR ERV1 41 449 0 3156 145 4 119 chr1 38223136 38223824 -204440529 + HERVE LTR ERV1 1 609 -7204 3976 184 54 36 chr1 38223843 38224945 -204439408 + HERVE LTR ERV1 732 4331 -3482 1826 224 58 6 chr1 38224945 38225293 -204439060 + HERV3 LTR ERV1 1722 2087 -6339 1663 278 39 2 chr1 38225418 38225824 -204438529 + HERV3 LTR ERV1 2049 2469 -5957 496 215 67 22 chr1 38225810 38225945 -204438408 + HERV3 LTR ERV1 3684 3824 -4602 * 5443 196 22 6 chr1 38225935 38227020 -204437333 + HERV3 LTR ERV1 5148 6313 -2113 1900 218 29 15 chr1 38227076 38227785 -204436568 + HERV3 LTR ERV1 7012 7811 -2 937 208 66 73 chr1 38227860 38228148 -204436205 + LTR2 LTR ERV1 44 329 -120 26 0 0 0 chr1 38229947 38229973 -204434380 + AT_rich Low_complexity Low_complexity 1 26 0 1026 164 89 14 chr1 38231222 38231436 -204432917 + AluJb SINE Alu 1 230 -82 2008 119 3 0 chr1 38231629 38231924 -204432429 - AluSq SINE Alu -17 296 1 2137 69 7 23 chr1 38231967 38232270 -204432083 - AluY SINE Alu -13 298 1 389 169 0 90 chr1 38233060 38233149 -204431204 + Tigger7 DNA MER2_type 2407 2487 0 329 167 56 56 chr1 38233391 38233463 -204430890 - AluSg/x SINE Alu -14 288 217 818 73 0 9 chr1 38233464 38233574 -204430779 - AluSq/x SINE Alu -203 109 1 1938 100 31 3 chr1 38233853 38234144 -204430209 - AluY SINE Alu -12 299 1 193 241 383 12 chr1 38234363 38234525 -204429828 + MIR SINE MIR 3 224 -38 3353 180 103 35 chr1 38235023 38235591 -204428762 + L1MB7 LINE L1 4477 5005 -1179 1629 171 42 0 chr1 38235591 38235877 -204428476 + AluJo SINE Alu 1 298 -14 3353 180 103 35 chr1 38235877 38235910 -204428443 + L1MB7 LINE L1 5005 5034 -1150 1643 111 87 4 chr1 38235910 38236162 -204428191 + AluSx SINE Alu 16 288 -24 3353 180 103 35 chr1 38236162 38236291 -204428062 + L1MB7 LINE L1 5034 5153 -1031 1819 128 25 0 chr1 38236291 38236565 -204427788 + AluSx SINE Alu 1 281 -31 3353 180 103 35 chr1 38236565 38236781 -204427572 + L1MB7 LINE L1 5153 5353 -831 1250 177 130 16 chr1 38236781 38237035 -204427318 + AluJb SINE Alu 2 284 -28 3353 180 103 35 chr1 38237035 38237371 -204426982 + L1MB7 LINE L1 5353 5665 -519 1933 124 31 0 chr1 38237371 38237661 -204426692 + AluSx SINE Alu 1 299 -13 3353 180 103 35 chr1 38237661 38237784 -204426569 + L1MB7 LINE L1 5665 6184 0 248 211 55 83 chr1 38237790 38237812 -204426541 - L2 LINE L2 -460 2854 2833 2139 105 3 7 chr1 38237812 38238108 -204426245 + AluSx SINE Alu 1 295 -17 248 211 55 83 chr1 38238108 38238194 -204426159 - L2 LINE L2 -481 2833 2749 196 271 129 29 chr1 38238205 38238275 -204426078 + L2 LINE L2 2604 2680 -634 369 180 114 32 chr1 38238285 38238494 -204425859 - MLT1H LTR MaLR -4 545 301 1913 132 10 3 chr1 38239050 38239346 -204425007 - AluJb SINE Alu -14 298 1 2298 97 0 0 chr1 38239347 38239655 -204424698 - AluSx SINE Alu -4 308 1 1668 117 63 10 chr1 38239800 38240100 -204424253 - L1MA8 LINE L1 -12 6279 5964 1184 162 10 0 chr1 38240214 38240411 -204423942 - L1MA8 LINE L1 -367 5924 5726 2058 108 3 0 chr1 38240611 38240898 -204423455 - AluSg SINE Alu -22 288 1 3355 138 0 100 chr1 38241136 38241377 -204422976 - L1MA7 LINE L1 -32 6259 5989 1983 115 0 63 chr1 38241377 38241708 -204422645 + AluSx SINE Alu 1 310 -2 3355 138 0 100 chr1 38241708 38241930 -204422423 - L1MA7 LINE L1 -302 5989 5740 1886 140 3 40 chr1 38241930 38242115 -204422238 - AluSx SINE Alu -2 310 141 2267 70 0 13 chr1 38242115 38242414 -204421939 - AluY SINE Alu -16 295 1 1886 140 3 40 chr1 38242414 38242550 -204421803 - AluSx SINE Alu -171 141 1 1949 137 3 3 chr1 38242554 38242854 -204421499 - AluSx SINE Alu -12 300 1 2281 100 0 3 chr1 38242859 38243170 -204421183 - AluY SINE Alu -1 310 1 3355 138 0 100 chr1 38243170 38243435 -204420918 - L1MA7 LINE L1 -558 5733 5473 1921 109 36 0 chr1 38243435 38243710 -204420643 - AluSc SINE Alu -8 301 17 3355 138 0 100 chr1 38243710 38243827 -204420526 - L1MA7 LINE L1 -818 5473 5343 603 214 0 0 chr1 38243820 38243937 -204420416 + L1 LINE L1 3801 3917 -2229 * 1565 173 10 26 chr1 38243967 38244280 -204420073 - AluSx SINE Alu -4 308 1 46 0 0 0 chr1 38244299 38244345 -204420008 + AT_rich Low_complexity Low_complexity 1 46 0 1029 77 0 53 chr1 38244345 38244515 -204419838 - L1PB2 LINE L1 -3 6148 5988 252 59 0 0 chr1 38244572 38244606 -204419747 + (CA)n Simple_repeat Simple_repeat 1 34 0 402 187 9 84 chr1 38244653 38244760 -204419593 - AluJo SINE Alu -95 217 119 2094 124 0 0 chr1 38244793 38245099 -204419254 - AluSq SINE Alu -7 306 1 51 65 0 0 chr1 38245099 38245192 -204419161 + AT_rich Low_complexity Low_complexity 1 93 0 2113 125 0 0 chr1 38245240 38245545 -204418808 - AluSx SINE Alu -7 305 1 556 312 148 65 chr1 38245557 38246069 -204418284 - L1MEc LINE L1 -5516 880 303 2021 123 10 10 chr1 38246069 38246371 -204417982 + AluSx SINE Alu 1 302 -10 556 312 148 65 chr1 38246371 38246493 -204417860 - L1MEc LINE L1 -6093 303 193 1726 177 30 71 chr1 38246579 38246915 -204417438 + MLT1B LTR MaLR 1 350 -40 2346 75 3 7 chr1 38246915 38247220 -204417133 - AluSq SINE Alu -9 304 1 2248 68 0 0 chr1 38247223 38247538 -204416815 - AluY SINE Alu 0 315 1 1726 177 30 71 chr1 38247538 38247603 -204416750 + MLT1B LTR MaLR 352 390 0 251 301 10 10 chr1 38247605 38247708 -204416645 - L1MEc LINE L1 -6255 141 39 431 189 25 33 chr1 38247810 38247932 -204416421 - L1MA10 LINE L1 -7 6327 6207 644 178 0 8 chr1 38247935 38248053 -204416300 - MER65A LTR ERV1 -20 425 309 1668 142 16 0 chr1 38248053 38248307 -204416046 + AluSx SINE Alu 1 258 -54 1979 136 27 0 chr1 38298519 38298820 -204365533 + AluSx SINE Alu 1 309 -3 2236 89 0 7 chr1 38300500 38300793 -204363560 + AluSq SINE Alu 1 291 -22 562 235 71 18 chr1 38300824 38300994 -204363359 + MER58C DNA MER1_type 32 210 -5 2224 130 0 0 chr1 38301126 38301433 -204362920 - AluSx SINE Alu 0 312 6 2240 170 40 7 chr1 38301572 38302025 -204362328 + L1MB2 LINE L1 5700 6167 -4 1614 172 28 7 chr1 38302060 38302350 -204362003 + AluSq SINE Alu 1 296 -17 329 216 57 0 chr1 38302371 38302459 -204361894 + L1ME LINE L1 3270 3362 -2784 234 200 33 17 chr1 38302549 38302609 -204361744 - MER3 DNA MER1_type -1 208 148 * 269 108 0 0 chr1 38302608 38302645 -204361708 - U2 snRNA snRNA -151 37 1 440 198 83 25 chr1 38302645 38302766 -204361587 - MER3 DNA MER1_type -60 149 22 1536 254 52 31 chr1 38302780 38303453 -204360900 + L1ME LINE L1 3394 4136 -2010 1958 132 0 0 chr1 38303453 38303726 -204360627 + AluSx SINE Alu 1 273 -39 1217 201 77 98 chr1 38303837 38304280 -204360073 + L1ME LINE L1 4738 5189 -975 204 97 0 0 chr1 38304280 38304311 -204360042 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 1217 201 77 98 chr1 38304311 38304444 -204359909 + L1ME LINE L1 5189 5323 -841 1634 152 0 40 chr1 38304444 38304742 -204359611 + AluJb SINE Alu 16 302 0 1217 201 77 98 chr1 38304742 38304938 -204359415 + L1ME LINE L1 5323 5483 -681 1423 160 25 25 chr1 38304973 38305248 -204359105 + AluJo SINE Alu 24 298 -14 526 251 18 27 chr1 38305248 38305467 -204358886 + L1M4 LINE L1 3390 3606 -2540 23 0 0 0 chr1 38305886 38305909 -204358444 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr1 38306261 38306286 -204358067 + (CA)n Simple_repeat Simple_repeat 2 26 0 2078 285 112 48 chr1 38306335 38307449 -204356904 + L2 LINE L2 1752 2936 -378 1799 172 19 13 chr1 38307728 38308036 -204356317 + AluJb SINE Alu 1 310 -2 700 258 152 40 chr1 38308091 38308305 -204356048 - L1MC4a LINE L1 -1926 5882 5619 2406 93 0 3 chr1 38308305 38308618 -204355735 + AluSx SINE Alu 1 312 0 700 258 152 40 chr1 38308618 38308725 -204355628 - L1MC4a LINE L1 -2189 5619 5525 476 145 0 13 chr1 38308728 38308804 -204355549 - MER58A DNA MER1_type 0 224 150 2220 77 6 49 chr1 38308882 38309207 -204355146 - AluY SINE Alu 0 311 1 1603 174 67 0 chr1 38309806 38310076 -204354277 + AluSx SINE Alu 1 288 -24 302 279 54 48 chr1 38310294 38310441 -204353912 - L1MC4 LINE L1 -803 7239 7092 418 342 0 9 chr1 38310509 38310623 -204353730 + L2 LINE L2 3160 3272 0 193 324 14 14 chr1 38310634 38310705 -204353648 - L2 LINE L2 -557 2757 2687 1681 158 10 48 chr1 38310757 38311048 -204353305 - AluJo SINE Alu -30 282 3 231 227 187 0 chr1 38311073 38311148 -204353205 - MLT1K LTR MaLR 0 588 500 192 323 48 0 chr1 38312236 38312298 -204352055 + MIR3 SINE MIR 8 72 -136 254 323 126 36 chr1 38312315 38312538 -204351815 - MIR SINE MIR 0 262 20 36 23 0 0 chr1 38313687 38313730 -204350623 + AT_rich Low_complexity Low_complexity 1 43 0 228 387 99 7 chr1 38314094 38314236 -204350117 + L2 LINE L2 3102 3256 -16 28 0 0 0 chr1 38314795 38314823 -204349530 + AT_rich Low_complexity Low_complexity 1 28 0 1597 157 42 54 chr1 38316551 38316749 -204347604 - AluJb SINE Alu -1 311 117 1809 139 7 4 chr1 38316749 38317023 -204347330 + AluSx SINE Alu 1 275 -37 1597 157 42 54 chr1 38317023 38317137 -204347216 - AluJb SINE Alu -195 117 3 865 175 19 25 chr1 38317169 38317329 -204347024 - MER20 DNA MER1_type 0 219 61 230 354 37 43 chr1 38318919 38319083 -204345270 - MIR SINE MIR -42 220 58 216 0 0 0 chr1 38319096 38319120 -204345233 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 122 0 39 chr1 38320586 38320898 -204343455 + AluSq SINE Alu 1 300 -13 2083 110 0 36 chr1 38321077 38321385 -204342968 - AluSp SINE Alu -16 297 1 2020 111 39 0 chr1 38321555 38321834 -204342519 + AluSx SINE Alu 5 294 -18 1043 163 8 119 chr1 38321878 38322130 -204342223 + MER58A DNA MER1_type 1 224 0 440 275 59 45 chr1 38322424 38322646 -204341707 + L1ME4a LINE L1 5523 5747 -374 1143 152 33 5 chr1 38322683 38322893 -204341460 - MER96B DNA MER1_type? -201 216 1 424 254 139 24 chr1 38323297 38323584 -204340769 + L1ME4a LINE L1 5791 6110 -11 31 58 0 0 chr1 38323594 38323646 -204340707 + AT_rich Low_complexity Low_complexity 1 52 0 207 196 0 0 chr1 38323831 38323877 -204340476 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 279 93 0 0 chr1 38324181 38324224 -204340129 + (T)n Simple_repeat Simple_repeat 1 43 0 216 0 0 0 chr1 38324584 38324608 -204339745 + (T)n Simple_repeat Simple_repeat 1 24 0 405 0 0 0 chr1 38324921 38324966 -204339387 + (TG)n Simple_repeat Simple_repeat 1 45 0 2246 75 0 3 chr1 38324971 38325274 -204339079 - AluY SINE Alu 0 302 1 497 319 57 27 chr1 38325844 38326179 -204338174 - MARNA DNA Mariner -156 430 86 780 162 108 3 chr1 38326230 38326458 -204337895 + L1MA8 LINE L1 5989 6223 -68 1281 145 39 30 chr1 38326479 38326713 -204337640 - MER46A DNA MER2_type 0 236 1 1993 149 0 3 chr1 38326734 38327035 -204337318 + AluSx SINE Alu 1 300 -12 234 105 0 0 chr1 38327075 38327113 -204337240 + (TA)n Simple_repeat Simple_repeat 1 38 0 2089 86 0 64 chr1 38327280 38327606 -204336747 - AluY SINE Alu -6 305 1 1078 113 0 0 chr1 38327608 38327750 -204336603 - AluY SINE Alu -169 142 1 2516 73 0 10 chr1 38327933 38328246 -204336107 - AluSp SINE Alu -2 311 2 726 155 0 9 chr1 38328432 38328548 -204335805 + FLAM_A SINE Alu 1 115 -18 1768 195 0 0 chr1 38329706 38330004 -204334349 + AluJo SINE Alu 1 298 -14 2309 84 0 14 chr1 38330442 38330738 -204333615 - AluSc SINE Alu -17 292 1 2320 90 0 0 chr1 38330831 38331119 -204333234 - AluSx SINE Alu -24 288 1 11290 132 89 73 chr1 38331391 38333005 -204331348 - Tigger1 DNA MER2_type -1 2417 830 2103 122 0 3 chr1 38333005 38333309 -204331044 - AluSc SINE Alu -6 303 1 932 102 0 7 chr1 38333309 38333446 -204330907 - AluSq/x SINE Alu -176 136 1 11290 132 89 73 chr1 38333446 38334051 -204330302 - Tigger1 DNA MER2_type -1587 831 24 2221 82 4 0 chr1 38334209 38334533 -204329820 - AluY SINE Alu 0 325 1 344 225 78 8 chr1 38334793 38334922 -204329431 - L1ME4a LINE L1 -15 6106 5969 237 292 56 0 chr1 38334931 38335003 -204329350 - MIR SINE MIR -76 186 111 2299 110 0 10 chr1 38335770 38336079 -204328274 + AluSx SINE Alu 1 306 -6 990 209 67 0 chr1 38336113 38336323 -204328030 + MER58A DNA MER1_type 1 224 0 683 182 92 152 chr1 38336324 38336422 -204327931 + LTR37B LTR ERV1 114 216 -252 589 35 12 12 chr1 38336422 38336507 -204327846 + (TA)n Simple_repeat Simple_repeat 1 85 0 683 182 92 152 chr1 38336507 38336547 -204327806 + LTR37B LTR ERV1 216 257 -211 1663 201 7 7 chr1 38336547 38336851 -204327502 + AluJo SINE Alu 1 304 -8 683 182 92 152 chr1 38336851 38337080 -204327273 + LTR37B LTR ERV1 257 460 -8 388 293 94 33 chr1 38337131 38337312 -204327041 - L3 LINE CR1 -3 1574 1383 185 321 54 0 chr1 38337521 38337577 -204326776 - L2 LINE L2 -10 3262 3204 5548 179 16 37 chr1 38337600 38338243 -204326110 + L1P LINE L1 2154 2760 -3386 2262 113 3 0 chr1 38338243 38338544 -204325809 + AluSq SINE Alu 1 302 -11 5548 179 16 37 chr1 38338544 38339172 -204325181 + L1P LINE L1 2760 3399 -2747 608 257 129 7 chr1 38339436 38339553 -204324800 + MER58B DNA MER1_type 27 128 -2292 1933 132 7 20 chr1 38339553 38339857 -204324496 + AluJb SINE Alu 1 300 -12 608 257 129 7 chr1 38339857 38340019 -204324334 + MER58B DNA MER1_type 128 340 -1 279 239 109 33 chr1 38340719 38340811 -204323542 - MER5B DNA MER1_type -78 100 2 303 28 0 0 chr1 38341647 38341683 -204322670 + (CA)n Simple_repeat Simple_repeat 2 37 0 420 158 0 0 chr1 38341684 38341760 -204322593 + (TA)n Simple_repeat Simple_repeat 1 76 0 2007 102 27 20 chr1 38341925 38342218 -204322135 - AluSx SINE Alu -17 295 1 336 21 0 0 chr1 38342714 38342761 -204321592 - L1MA3 LINE L1 0 6305 6259 24 0 0 0 chr1 38342766 38342790 -204321563 + AT_rich Low_complexity Low_complexity 1 24 0 324 339 21 24 chr1 38343245 38343477 -204320876 + MIR SINE MIR 12 243 -19 520 259 14 97 chr1 38344220 38344299 -204320054 - MER112 DNA MER1_type -5 255 171 1981 121 9 19 chr1 38344299 38344614 -204319739 - AluSx SINE Alu 0 312 1 520 259 14 97 chr1 38344614 38344812 -204319541 - MER112 DNA MER1_type -89 171 1 1911 133 149 8 chr1 38345706 38346081 -204318272 - MSTA LTR MaLR 0 428 1 323 289 62 0 chr1 38346330 38346427 -204317926 + L2 LINE L2 3199 3301 -12 364 165 68 29 chr1 38347584 38347666 -204316687 + MER112 DNA MER1_type 5 93 -167 2352 104 0 0 chr1 38347666 38347975 -204316378 - AluSx SINE Alu -3 309 1 364 165 68 29 chr1 38347975 38347995 -204316358 + MER112 DNA MER1_type 93 111 -149 196 30 61 0 chr1 38348048 38348081 -204316272 + A-rich Low_complexity Low_complexity 3 37 0 832 112 15 22 chr1 38348172 38348306 -204316047 - FLAM_C SINE Alu 0 133 1 27 62 0 0 chr1 38348772 38348820 -204315533 + AT_rich Low_complexity Low_complexity 1 48 0 2485 64 0 3 chr1 38348943 38349240 -204315113 + AluY SINE Alu 1 296 -15 243 0 0 0 chr1 38349252 38349279 -204315074 + (TG)n Simple_repeat Simple_repeat 2 28 0 2511 79 127 5 chr1 38349742 38350135 -204314218 - LTR7 LTR ERV1 -9 441 1 608 259 0 18 chr1 38350356 38350526 -204313827 + FRAM SINE Alu 1 167 -9 1656 139 170 16 chr1 38350531 38350854 -204313499 - MER83B LTR ERV1 0 378 6 2267 100 3 3 chr1 38351235 38351536 -204312817 + AluSg SINE Alu 5 305 -5 21 36 0 0 chr1 38352987 38353015 -204311338 + AT_rich Low_complexity Low_complexity 1 28 0 271 359 53 0 chr1 38353275 38353406 -204310947 - MIR SINE MIR -17 245 108 3344 195 95 54 chr1 38353525 38354290 -204310063 - L1M4b LINE L1 -6052 807 11 871 112 16 8 chr1 38354301 38354426 -204309927 + FLAM_C SINE Alu 1 126 -17 350 239 0 0 chr1 38354567 38354638 -204309715 - MER5A DNA MER1_type -104 85 15 808 161 0 8 chr1 38354784 38354914 -204309439 + FLAM_C SINE Alu 1 129 -4 1407 172 192 13 chr1 38355054 38355362 -204308991 - MER47A DNA MER2_type -3 363 1 526 293 67 29 chr1 38357443 38357682 -204306671 - MIR SINE MIR 0 262 15 1866 92 4 8 chr1 38359364 38359668 -204304685 + AluY SINE Alu 33 335 0 3920 146 34 9 chr1 38359675 38359835 -204304518 + L1MB5 LINE L1 5172 5327 -847 1412 140 184 82 chr1 38359835 38360164 -204304189 + MSTB1 LTR MaLR 1 378 -54 2482 81 0 0 chr1 38360164 38360461 -204303892 - AluSg SINE Alu -13 297 1 1412 140 184 82 chr1 38360461 38360523 -204303830 + MSTB1 LTR MaLR 378 432 0 3920 146 34 9 chr1 38360523 38361178 -204303175 + L1MB5 LINE L1 5327 5996 -178 288 0 0 0 chr1 38361346 38361378 -204302975 + (TG)n Simple_repeat Simple_repeat 2 33 0 313 252 197 37 chr1 38361627 38361845 -204302508 - L1M4 LINE L1 -2922 3224 2972 1621 247 170 9 chr1 38362187 38362729 -204301624 - L1MC4 LINE L1 -953 7089 6461 2185 110 0 10 chr1 38363143 38363443 -204300910 - AluSg SINE Alu -13 297 1 619 53 0 0 chr1 38363451 38363526 -204300827 - HY5 scRNA scRNA -8 76 2 1903 139 0 23 chr1 38363869 38364170 -204300183 - AluJo SINE Alu -18 294 1 265 261 144 31 chr1 38364288 38364545 -204299808 - HAL1 LINE L1 -1022 1485 1200 2338 93 0 7 chr1 38364707 38365009 -204299344 + AluSx SINE Alu 1 300 -12 2713 26 3 0 chr1 38365579 38365881 -204298472 - AluY SINE Alu -8 303 1 2044 96 30 0 chr1 38367451 38367721 -204296632 + AluSx SINE Alu 21 298 -14 493 133 26 53 chr1 38368311 38368424 -204295929 + MER5A DNA MER1_type 1 110 -79 196 196 245 20 chr1 38368470 38368572 -204295781 + MIR SINE MIR 17 141 -67 2400 78 7 13 chr1 38369713 38370020 -204294333 - AluSg SINE Alu -5 305 1 212 159 0 48 chr1 38372273 38372336 -204292017 + A-rich Low_complexity Low_complexity 2 61 0 234 336 84 0 chr1 38373607 38373738 -204290615 + L2 LINE L2 2566 2707 -607 216 340 70 19 chr1 38373861 38374076 -204290277 + L2 LINE L2 2339 2564 -750 1049 121 67 6 chr1 38374149 38374314 -204290039 - AluSq SINE Alu -4 309 135 1833 164 0 3 chr1 38374343 38374473 -204289880 + AluJb SINE Alu 1 130 -182 180 0 0 0 chr1 38374473 38374493 -204289860 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1833 164 0 3 chr1 38374493 38374648 -204289705 + AluJb SINE Alu 130 285 -27 374 293 251 14 chr1 38374812 38375099 -204289254 + L2 LINE L2 2886 3240 -32 965 159 0 7 chr1 38375282 38375427 -204288926 + FRAM SINE Alu 1 144 -32 313 261 57 0 chr1 38377186 38377274 -204287079 + MIR SINE MIR 54 146 -116 22 56 0 0 chr1 38377336 38377372 -204286981 + AT_rich Low_complexity Low_complexity 1 36 0 2148 123 0 3 chr1 38379023 38379341 -204285012 + AluSx SINE Alu 1 317 0 1420 171 72 31 chr1 38379341 38379633 -204284720 - Charlie4a DNA MER1_type -202 306 3 747 226 64 43 chr1 38379989 38380224 -204284129 - MIR SINE MIR -3 259 20 242 372 21 11 chr1 38381001 38381192 -204283161 + L2 LINE L2 2174 2366 -948 509 275 161 0 chr1 38381192 38381403 -204282950 - MIR SINE MIR -17 245 1 544 295 18 12 chr1 38381691 38381857 -204282496 + MER5B DNA MER1_type 12 178 0 301 339 180 25 chr1 38382060 38382875 -204281478 + L2 LINE L2 1764 2705 -609 1441 153 9 0 chr1 38383198 38383420 -204280933 - AluJo SINE Alu -3 309 86 277 161 92 35 chr1 38385211 38385298 -204279055 + MIR SINE MIR 58 149 -59 251 229 33 66 chr1 38385818 38385879 -204278474 + MIR SINE MIR 65 124 -84 252 342 0 0 chr1 38386995 38387074 -204277279 + G-rich Low_complexity Low_complexity 3 81 0 306 0 0 0 chr1 38388457 38388491 -204275862 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 402 51 153 0 chr1 38389661 38389720 -204274633 - MADE1 DNA Mariner 0 80 13 697 295 181 0 chr1 38390758 38391012 -204273341 + MER102b DNA MER1_type 11 310 -31 186 309 283 13 chr1 38391018 38391170 -204273183 - L3 LINE CR1 -105 1472 1280 2612 66 0 0 chr1 38391205 38391510 -204272843 - AluSg SINE Alu -5 305 1 592 208 163 55 chr1 38392026 38392161 -204272192 - MIR SINE MIR -6 256 137 2166 119 3 0 chr1 38392161 38392456 -204271897 + AluSx SINE Alu 1 296 -16 915 112 0 0 chr1 38392456 38392599 -204271754 + (GGAA)n Simple_repeat Simple_repeat 3 145 0 592 208 163 55 chr1 38392599 38392664 -204271689 - MIR SINE MIR -124 138 33 341 317 165 0 chr1 38392699 38392863 -204271490 - MIR SINE MIR -44 218 28 246 105 0 0 chr1 38393124 38393162 -204271191 + (A)n Simple_repeat Simple_repeat 1 38 0 2516 62 0 3 chr1 38393559 38393864 -204270489 - AluY SINE Alu -7 304 1 4915 207 79 63 chr1 38393985 38395695 -204268658 - L1ME1 LINE L1 -14 6152 4471 1901 171 0 10 chr1 38395695 38395993 -204268360 + AluJb SINE Alu 3 297 -15 4915 207 79 63 chr1 38395993 38396641 -204267712 - L1ME1 LINE L1 -1695 4471 3731 2195 128 0 0 chr1 38396641 38396945 -204267408 - AluSx SINE Alu -8 304 1 4915 207 79 63 chr1 38396945 38397318 -204267035 - L1ME1 LINE L1 -2435 3731 3365 476 121 0 0 chr1 38397326 38397392 -204266961 - AluJ/FLAM SINE Alu -245 67 2 856 232 138 24 chr1 38397398 38397422 -204266931 - L1ME1 LINE L1 -3033 3113 3093 1761 178 13 3 chr1 38397422 38397720 -204266633 - AluJo SINE Alu -11 301 1 856 232 138 24 chr1 38397720 38398065 -204266288 - L1ME1 LINE L1 -3053 3093 2702 217 244 0 0 chr1 38398207 38398248 -204266105 + MIR3 SINE MIR 147 187 -21 29 47 0 0 chr1 38398880 38398923 -204265430 + AT_rich Low_complexity Low_complexity 1 43 0 985 169 6 12 chr1 38399731 38399903 -204264450 + FRAM SINE Alu 1 171 -5 239 320 100 20 chr1 38399999 38400099 -204264254 - L2 LINE L2 0 3272 3165 345 243 54 61 chr1 38400465 38400509 -204263844 + MER103 DNA DNA 2 45 -121 2272 108 19 0 chr1 38400509 38400816 -204263537 + AluSp SINE Alu 1 313 0 345 243 54 61 chr1 38400816 38400919 -204263434 + MER103 DNA DNA 45 148 -18 441 306 44 26 chr1 38401518 38401747 -204262606 + L1ME LINE L1 5589 5821 -345 1626 176 42 3 chr1 38401813 38402102 -204262251 + AluJo SINE Alu 1 300 -12 4588 181 36 50 chr1 38402139 38402955 -204261398 - L1MB5 LINE L1 -13 6161 5335 1412 140 184 82 chr1 38402955 38403017 -204261336 - MSTB1 LTR MaLR 0 432 378 2482 81 0 0 chr1 38403017 38403314 -204261039 + AluSg SINE Alu 1 297 -13 1412 140 184 82 chr1 38403314 38403643 -204260710 - MSTB1 LTR MaLR -54 378 1 4588 181 36 50 chr1 38403643 38403810 -204260543 - L1MB5 LINE L1 -839 5335 5167 1994 102 3 11 chr1 38403810 38404147 -204260206 - AluY SINE Alu 0 335 1 4588 181 36 50 chr1 38404147 38404175 -204260178 - L1MB5 LINE L1 -1007 5167 5140 200 118 29 0 chr1 38404175 38404209 -204260144 + T-rich Low_complexity Low_complexity 5 39 0 4588 181 36 50 chr1 38404209 38404574 -204259779 - L1MB5 LINE L1 -1034 5140 4771 2044 50 0 8 chr1 38404574 38404812 -204259541 - AluY SINE Alu -75 236 1 4588 181 36 50 chr1 38404812 38405235 -204259118 - L1MB5 LINE L1 -1403 4771 4375 2084 58 43 33 chr1 38405235 38405535 -204258818 - AluY SINE Alu 0 304 2 4588 181 36 50 chr1 38405535 38405878 -204258475 - L1MB5 LINE L1 -1799 4375 4029 1558 185 4 11 chr1 38406418 38406678 -204257675 - AluJo SINE Alu -30 282 25 1015 253 93 3 chr1 38407966 38408115 -204256238 + MER58B DNA MER1_type 1 135 -2285 2013 125 3 20 chr1 38408115 38408420 -204255933 + AluJb SINE Alu 1 300 -12 1015 253 93 3 chr1 38408420 38408582 -204255771 + MER58B DNA MER1_type 135 340 -1 267 239 109 33 chr1 38409282 38409374 -204254979 - MER5B DNA MER1_type -78 100 2 21 0 0 0 chr1 38409659 38409680 -204254673 + AT_rich Low_complexity Low_complexity 1 21 0 2263 102 0 0 chr1 38409910 38410216 -204254137 - AluSx SINE Alu 0 306 1 1048 184 0 12 chr1 38410443 38410611 -204253742 + FRAM SINE Alu 1 166 0 812 172 0 62 chr1 38410919 38411064 -204253289 + FRAM SINE Alu 11 146 -30 2185 92 14 7 chr1 38411080 38411374 -204252979 + AluSq SINE Alu 1 296 -17 315 269 144 19 chr1 38411568 38411672 -204252681 + L2 LINE L2 3194 3310 -3 414 52 0 143 chr1 38412668 38412745 -204251608 + MADE1 DNA Mariner 1 66 -14 436 241 58 92 chr1 38415986 38416093 -204248260 + MIR SINE MIR 8 109 -153 2393 54 4 0 chr1 38416093 38416404 -204247949 + AluY SINE Alu 1 312 0 436 241 58 92 chr1 38416404 38416469 -204247884 + MIR SINE MIR 109 175 -87 184 143 0 95 chr1 38416467 38416509 -204247844 + L2 LINE L2 3264 3301 -12 * 2076 129 7 7 chr1 38416752 38417054 -204247299 + AluSx SINE Alu 1 302 -10 34 24 0 0 chr1 38417268 38417309 -204247044 + AT_rich Low_complexity Low_complexity 1 41 0 189 158 0 0 chr1 38418212 38418250 -204246103 - L2 LINE L2 0 3313 3276 2010 149 10 0 chr1 38418335 38418631 -204245722 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr1 38418746 38418769 -204245584 + AT_rich Low_complexity Low_complexity 1 23 0 388 327 136 16 chr1 38418773 38419201 -204245152 - L2 LINE L2 -225 3047 2565 2123 121 0 13 chr1 38419220 38419518 -204244835 + AluSx SINE Alu 1 294 -18 2999 218 75 29 chr1 38419527 38420327 -204244026 - L1ME1 LINE L1 -9 6157 5321 730 195 31 0 chr1 38420331 38420490 -204243863 - L1MA10 LINE L1 -2 6332 6169 2358 71 3 10 chr1 38420535 38420846 -204243507 - AluY SINE Alu -2 309 1 1999 125 14 7 chr1 38420846 38421140 -204243213 - AluSx SINE Alu -15 297 1 414 276 60 0 chr1 38421145 38421279 -204243074 - L1MC/D LINE L1 -2032 5776 5635 226 260 20 0 chr1 38421408 38421458 -204242895 + L2 LINE L2 3263 3313 0 1407 182 4 32 chr1 38421546 38421799 -204242554 + AluJo SINE Alu 49 294 -18 2438 94 10 0 chr1 38421801 38422108 -204242245 + AluSg SINE Alu 1 310 0 186 338 0 0 chr1 38422302 38422379 -204241974 - L2 LINE L2 -2234 1080 1004 22 35 0 0 chr1 38422870 38422899 -204241454 + AT_rich Low_complexity Low_complexity 1 29 0 438 77 333 0 chr1 38423202 38423280 -204241073 - AluSc SINE Alu -11 298 195 3514 208 36 67 chr1 38423599 38423906 -204240447 + L1M4 LINE L1 4071 4386 -1760 2031 62 47 33 chr1 38423906 38424205 -204240148 + AluY SINE Alu 2 304 0 3514 208 36 67 chr1 38424205 38424625 -204239728 + L1M4 LINE L1 4386 4756 -1390 2021 50 0 8 chr1 38424625 38424863 -204239490 + AluY SINE Alu 1 236 -75 3514 208 36 67 chr1 38424863 38425227 -204239126 + L1M4 LINE L1 4756 5130 -1016 200 118 29 0 chr1 38425228 38425262 -204239091 + A-rich Low_complexity Low_complexity 5 39 0 2127 92 0 10 chr1 38425290 38425607 -204238746 + AluY SINE Alu 1 314 0 2092 103 10 30 chr1 38425775 38426075 -204238278 - AluSg SINE Alu -16 294 1 3035 230 38 28 chr1 38426075 38426384 -204237969 - L1ME1 LINE L1 -204 6460 6156 2487 70 3 0 chr1 38426384 38426682 -204237671 - AluSp SINE Alu -14 299 1 3035 230 38 28 chr1 38426682 38427661 -204236692 - L1ME1 LINE L1 -508 6156 5164 1655 183 71 53 chr1 38427679 38428098 -204236255 - MLT1C LTR MaLR 0 467 31 1483 206 40 30 chr1 38428119 38428248 -204236105 - L1ME1 LINE L1 -1644 5000 4874 765 191 24 8 chr1 38428248 38428374 -204235979 + FLAM_A SINE Alu 1 128 -5 1483 206 40 30 chr1 38428374 38428647 -204235706 - L1ME1 LINE L1 -1770 4874 4594 234 0 0 0 chr1 38428721 38428747 -204235606 + (TA)n Simple_repeat Simple_repeat 2 27 0 1792 15 0 0 chr1 38428755 38428956 -204235397 - L1HS LINE L1 0 6155 5955 653 272 96 33 chr1 38428952 38429224 -204235129 - L1ME1 LINE L1 -5342 1204 916 * 284 278 80 46 chr1 38429305 38429456 -204234897 - L1ME1 LINE L1 -5671 871 716 249 323 97 16 chr1 38429442 38429566 -204234787 - L1ME LINE L1 -5605 465 332 * 692 153 15 58 chr1 38429754 38429891 -204234462 - FLAM_A SINE Alu -2 131 1 1646 143 77 14 chr1 38430064 38430351 -204234002 + AluJb SINE Alu 5 309 -3 836 261 64 45 chr1 38430494 38430568 -204233785 - L1ME LINE L1 -5219 851 780 1526 178 19 54 chr1 38430568 38430883 -204233470 + AluJo SINE Alu 1 304 -8 836 261 64 45 chr1 38430883 38431214 -204233139 - L1ME LINE L1 -5290 780 431 1939 125 38 10 chr1 38431214 38431502 -204232851 - AluSx SINE Alu -16 296 1 836 261 64 45 chr1 38431502 38431669 -204232684 - L1ME LINE L1 -5639 431 269 630 310 63 49 chr1 38431811 38432256 -204232097 - L1ME LINE L1 -5610 460 10 515 319 114 34 chr1 38432266 38432963 -204231390 - L2 LINE L2 -774 2540 1715 1164 271 124 15 chr1 38433185 38433595 -204230758 + L1MC4a LINE L1 22 476 -5920 2246 115 3 10 chr1 38433608 38433922 -204230431 - AluSx SINE Alu 0 312 1 999 143 200 0 chr1 38433922 38434097 -204230256 - AluJb SINE Alu -17 295 86 2836 250 76 28 chr1 38434112 38434676 -204229677 + L1MC4a LINE L1 489 1024 -5372 2380 119 143 11 chr1 38434676 38435054 -204229299 + MSTA LTR MaLR 1 428 0 2836 250 76 28 chr1 38435054 38435570 -204228783 + L1MC4a LINE L1 1024 1621 -4775 2987 188 77 136 chr1 38435587 38436190 -204228163 + L1MC4a LINE L1 3198 3835 -2380 2258 102 0 0 chr1 38436190 38436508 -204227845 + AluSg SINE Alu 1 318 0 2987 188 77 136 chr1 38436508 38436834 -204227519 + L1MC4a LINE L1 3835 4162 -2053 761 200 0 0 chr1 38436834 38436964 -204227389 + FLAM_C SINE Alu 2 131 -12 2987 188 77 136 chr1 38436964 38437268 -204227085 + L1MC4a LINE L1 4162 4482 -1733 1521 159 33 0 chr1 38437550 38437795 -204226558 + AluJb SINE Alu 25 277 -35 216 0 0 0 chr1 38437798 38437822 -204226531 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2308 69 35 3 chr1 38437984 38438274 -204226079 + AluY SINE Alu 1 299 -12 1330 266 91 59 chr1 38439347 38439844 -204224509 + L1MC4a LINE L1 5421 5944 -1933 2344 97 3 0 chr1 38439844 38440142 -204224211 + AluSp SINE Alu 1 299 -14 1330 266 91 59 chr1 38440142 38440284 -204224069 + L1MC4a LINE L1 5944 6080 -1797 240 59 0 0 chr1 38440633 38440667 -204223686 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2318 118 6 59 chr1 38441470 38441826 -204222527 - MER1B DNA MER1_type 0 337 1 2496 128 11 19 chr1 38442396 38442763 -204221590 + THE1B LTR MaLR 1 364 0 12562 90 6 2 chr1 38442763 38444337 -204220016 + THE1B-int LTR MaLR 1 1580 0 2531 99 29 56 chr1 38444337 38444711 -204219642 + THE1B LTR MaLR 1 364 0 1517 151 13 0 chr1 38445492 38445724 -204218629 + AluJb SINE Alu 21 255 -57 23 54 0 0 chr1 38445990 38446027 -204218326 + AT_rich Low_complexity Low_complexity 1 37 0 384 271 85 34 chr1 38446131 38446249 -204218104 - L2 LINE L2 -2 3270 3147 2144 122 3 3 chr1 38446352 38446648 -204217705 - AluSx SINE Alu -16 296 1 361 257 30 21 chr1 38446667 38446838 -204217515 - L1ME LINE L1 -303 5818 5646 1131 300 111 24 chr1 38446855 38447449 -204216904 + L2 LINE L2 1948 2593 -721 590 322 64 13 chr1 38447454 38447687 -204216666 + MIR SINE MIR 6 250 -12 1489 152 0 0 chr1 38447688 38447905 -204216448 - AluJb SINE Alu -12 300 84 425 354 148 18 chr1 38447938 38448503 -204215850 + L2 LINE L2 2586 3270 -2 1596 193 3 17 chr1 38448536 38448832 -204215521 - AluJo SINE Alu -20 292 1 2184 151 0 0 chr1 38448870 38449181 -204215172 + AluJb SINE Alu 1 311 -1 2106 119 7 11 chr1 38450969 38451254 -204213099 - AluSx SINE Alu -28 284 1 2182 95 27 7 chr1 38451446 38451740 -204212613 - AluSx SINE Alu -12 300 1 2341 115 0 6 chr1 38451743 38452057 -204212296 - AluSx SINE Alu 0 312 1 696 318 60 0 chr1 38452859 38453092 -204211261 + MIR SINE MIR 1 247 -15 211 273 103 39 chr1 38453108 38453210 -204211143 - MIR SINE MIR -65 143 54 792 183 0 23 chr1 38453304 38453435 -204210918 + FLAM_A SINE Alu 1 128 -5 242 295 133 50 chr1 38453604 38453906 -204210447 + L2 LINE L2 1734 2060 -1254 1166 141 0 0 chr1 38454137 38454300 -204210053 - FRAM SINE Alu -14 162 1 214 319 126 43 chr1 38454494 38454701 -204209652 + L2 LINE L2 2831 3054 -218 826 195 49 24 chr1 38454814 38454978 -204209375 - MER20 DNA MER1_type 0 219 52 7089 93 6 23 chr1 38455659 38456045 -204208308 + L1MA2 LINE L1 5062 5453 -851 2636 46 0 0 chr1 38456045 38456348 -204208005 + AluY SINE Alu 1 303 -8 7089 93 6 23 chr1 38456348 38457227 -204207126 + L1MA2 LINE L1 5453 6304 0 29 0 0 0 chr1 38457228 38457257 -204207096 + AT_rich Low_complexity Low_complexity 1 29 0 192 158 0 0 chr1 38458160 38458198 -204206155 - L2 LINE L2 0 3313 3276 2007 152 10 0 chr1 38458283 38458579 -204205774 + AluJb SINE Alu 1 299 -13 225 0 0 0 chr1 38458607 38458632 -204205721 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr1 38458692 38458715 -204205638 + AT_rich Low_complexity Low_complexity 1 23 0 413 318 157 19 chr1 38458719 38459140 -204205213 - L2 LINE L2 -225 3047 2565 2132 121 0 13 chr1 38459159 38459457 -204204896 + AluSx SINE Alu 1 294 -18 2672 220 77 16 chr1 38459466 38460234 -204204119 - L1ME1 LINE L1 -9 6157 5343 2707 231 39 28 chr1 38460280 38460474 -204203879 - L1ME1 LINE L1 -5 6659 6469 2697 45 0 0 chr1 38460474 38460783 -204203570 - AluY SINE Alu -2 309 1 2707 231 39 28 chr1 38460783 38461090 -204203263 - L1ME1 LINE L1 -195 6469 6167 2479 70 3 0 chr1 38461090 38461388 -204202965 - AluSp SINE Alu -14 299 1 2707 231 39 28 chr1 38461388 38462367 -204201986 - L1ME1 LINE L1 -497 6167 5164 1485 182 71 54 chr1 38462385 38462804 -204201549 - MLT1C LTR MaLR 0 467 31 1315 208 38 35 chr1 38462833 38462954 -204201399 - L1ME1 LINE L1 -1655 4989 4870 717 191 24 8 chr1 38462954 38463080 -204201273 + FLAM_A SINE Alu 1 128 -5 1315 208 38 35 chr1 38463080 38463353 -204201000 - L1ME1 LINE L1 -1774 4870 4594 360 0 0 0 chr1 38463427 38463467 -204200886 + (TA)n Simple_repeat Simple_repeat 2 41 0 1659 0 0 0 chr1 38463467 38463660 -204200693 - L1HS LINE L1 -3 6152 5960 608 255 21 27 chr1 38463661 38463849 -204200504 - L1ME1 LINE L1 -5342 1204 1018 356 314 76 50 chr1 38463886 38464350 -204200003 - L1ME1 LINE L1 -5539 1095 716 641 153 15 58 chr1 38464463 38464600 -204199753 - FLAM_A SINE Alu -2 131 1 1670 146 76 14 chr1 38464773 38465061 -204199292 + AluJb SINE Alu 5 310 -2 744 259 53 45 chr1 38465204 38465278 -204199075 - L1ME LINE L1 -5219 851 779 1589 182 19 32 chr1 38465278 38465586 -204198767 + AluJo SINE Alu 1 304 -8 744 259 53 45 chr1 38465586 38465917 -204198436 - L1ME LINE L1 -5291 779 445 1948 125 38 10 chr1 38465917 38466205 -204198148 - AluSx SINE Alu -16 296 1 744 259 53 45 chr1 38466205 38466332 -204198021 - L1ME LINE L1 -5625 445 320 497 312 63 49 chr1 38466514 38466959 -204197394 - L1ME LINE L1 -5610 460 10 540 316 113 32 chr1 38466969 38467666 -204196687 - L2 LINE L2 -774 2540 1715 1028 281 122 12 chr1 38467888 38468298 -204196055 + L1ME1 LINE L1 22 476 -5920 2254 115 3 10 chr1 38468311 38468625 -204195728 - AluSx SINE Alu 0 312 1 1003 143 200 0 chr1 38468625 38468800 -204195553 - AluJb SINE Alu -17 295 86 2456 250 76 28 chr1 38468815 38469379 -204194974 + L1ME1 LINE L1 489 1024 -5372 2197 119 143 11 chr1 38469379 38469757 -204194596 + MSTA LTR MaLR 1 428 0 2456 250 76 28 chr1 38469757 38470273 -204194080 + L1ME1 LINE L1 1024 1621 -4775 3135 172 67 199 chr1 38470293 38470893 -204193460 + L1ME1 LINE L1 3201 3879 -2336 2269 99 0 0 chr1 38470893 38471211 -204193142 + AluSg SINE Alu 1 318 0 3135 172 67 199 chr1 38471211 38471536 -204192817 + L1ME1 LINE L1 3879 4245 -1970 711 199 0 0 chr1 38471536 38471667 -204192686 + FLAM_C SINE Alu 1 131 -12 3135 172 67 199 chr1 38471667 38472252 -204192101 + L1ME1 LINE L1 4245 4906 -1309 1557 163 32 0 chr1 38472252 38472531 -204191822 + AluJb SINE Alu 23 309 0 3135 172 67 199 chr1 38472531 38472826 -204191527 + L1ME1 LINE L1 4906 5238 -977 2147 117 0 7 chr1 38472826 38473135 -204191218 + AluSg SINE Alu 1 307 -3 3135 172 67 199 chr1 38473135 38473172 -204191181 + L1ME1 LINE L1 5238 5278 -937 1622 166 7 58 chr1 38473172 38473480 -204190873 + AluJb SINE Alu 1 292 -20 3135 172 67 199 chr1 38473480 38473750 -204190603 + L1ME1 LINE L1 5278 5098 -1117 2191 98 27 7 chr1 38473750 38474046 -204190307 + AluSx SINE Alu 1 302 -10 3135 172 67 199 chr1 38474046 38474263 -204190090 + L1ME1 LINE L1 5097 5341 -874 227 27 0 54 chr1 38474282 38474319 -204190034 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1123 168 0 0 chr1 38474323 38474484 -204189869 - AluJb SINE Alu -23 289 129 2755 184 27 65 chr1 38474492 38474797 -204189556 + L1ME1 LINE L1 5381 5696 -539 2216 131 0 0 chr1 38474797 38475103 -204189250 + AluSx SINE Alu 1 306 -6 2755 184 27 65 chr1 38475103 38475322 -204189031 + L1ME1 LINE L1 5696 5869 -366 2165 127 0 10 chr1 38475322 38475630 -204188723 + AluSx SINE Alu 2 306 -6 2755 184 27 65 chr1 38475630 38475871 -204188482 + L1ME1 LINE L1 5869 6118 -117 425 210 57 0 chr1 38475909 38476033 -204188320 + L1MB7 LINE L1 6045 6175 -9 445 256 42 30 chr1 38476033 38476301 -204188052 + L1MA10 LINE L1 5891 6327 -5 2199 106 3 7 chr1 38476710 38477013 -204187340 + AluSq SINE Alu 1 302 -11 2010 174 19 11 chr1 38477878 38478240 -204186113 + MLT1A1 LTR MaLR 1 365 0 256 136 0 99 chr1 38478409 38478490 -204185863 + (CAAAAA)n Simple_repeat Simple_repeat 5 77 0 2402 90 0 3 chr1 38480254 38480554 -204183799 + AluSp SINE Alu 1 299 -14 668 249 143 46 chr1 38480554 38480656 -204183697 + MIR SINE MIR 22 113 -149 2010 128 13 7 chr1 38480656 38480960 -204183393 + AluSc SINE Alu 1 306 -3 668 249 143 46 chr1 38480960 38481074 -204183279 + MIR SINE MIR 113 259 -3 426 39 0 0 chr1 38481081 38481133 -204183220 + (CAT)n Simple_repeat Simple_repeat 3 54 0 919 305 89 60 chr1 38481144 38482022 -204182331 + L2 LINE L2 688 1590 -1724 677 132 45 196 chr1 38482022 38482242 -204182111 + MER5A DNA MER1_type 1 187 -2 483 323 135 33 chr1 38482309 38482349 -204182004 + L2 LINE L2 2599 2633 -680 2194 168 57 19 chr1 38482349 38482542 -204181811 + Tigger2a DNA MER2_type 1 185 -2523 2216 122 0 0 chr1 38482542 38482845 -204181508 - AluSx SINE Alu -9 303 1 2373 96 0 0 chr1 38482853 38483155 -204181198 - AluY SINE Alu -9 302 1 2194 168 57 19 chr1 38483155 38483370 -204180983 + Tigger2a DNA MER2_type 191 434 0 483 323 135 33 chr1 38483370 38483959 -204180394 + L2 LINE L2 2633 3296 -17 201 298 91 58 chr1 38483961 38484082 -204180271 + L2 LINE L2 2928 3052 -220 418 288 54 18 chr1 38484203 38484314 -204180039 + L2 LINE L2 3145 3259 -13 518 275 84 39 chr1 38484379 38484557 -204179796 + MIR SINE MIR 48 233 -29 252 0 0 0 chr1 38486076 38486104 -204178249 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 838 206 24 0 chr1 38486761 38486926 -204177427 + MER96 DNA MER1_type? 7 175 0 946 301 54 9 chr1 38487554 38487979 -204176374 + L1MEc LINE L1 22 465 -5931 537 215 40 13 chr1 38487972 38488121 -204176232 + L1M4 LINE L1 2907 3059 -3087 * 830 221 25 0 chr1 38488121 38488320 -204176033 + MLT1C LTR MaLR 192 395 -72 284 133 100 0 chr1 38489036 38489096 -204175257 - AluSc SINE Alu 0 299 234 1625 178 7 4 chr1 38489245 38489567 -204174786 - AluJo SINE Alu 0 323 1 953 127 15 0 chr1 38490107 38490241 -204174112 + AluJo SINE Alu 1 136 -176 303 286 136 5 chr1 38490377 38490576 -204173777 + L1MC4a LINE L1 5689 5913 -1895 2115 136 7 0 chr1 38490647 38490957 -204173396 + AluSx SINE Alu 1 312 0 477 210 65 62 chr1 38491001 38491246 -204173107 + L1M4 LINE L1 3047 3295 -2851 2384 104 0 10 chr1 38491246 38491555 -204172798 + AluSx SINE Alu 1 306 -6 477 210 65 62 chr1 38491555 38491585 -204172768 + L1M4 LINE L1 3295 3323 -2823 984 209 67 0 chr1 38491589 38491799 -204172554 + MER58A DNA MER1_type 1 224 0 605 172 91 159 chr1 38491800 38491898 -204172455 + LTR37B LTR ERV1 114 217 -251 283 59 20 20 chr1 38491898 38491949 -204172404 + (TA)n Simple_repeat Simple_repeat 2 52 0 605 172 91 159 chr1 38491949 38491992 -204172361 + LTR37B LTR ERV1 217 261 -207 1706 201 7 7 chr1 38491992 38492296 -204172057 + AluJo SINE Alu 1 304 -8 605 172 91 159 chr1 38492296 38492525 -204171828 + LTR37B LTR ERV1 261 460 -8 402 280 111 32 chr1 38492576 38492765 -204171588 - L3 LINE CR1 -3 1574 1371 184 321 54 0 chr1 38492967 38493023 -204171330 - L2 LINE L2 -10 3262 3204 15492 152 11 16 chr1 38493047 38493690 -204170663 + L1PA14 LINE L1 2154 2799 -3362 2290 113 3 0 chr1 38493690 38493991 -204170362 + AluSq SINE Alu 1 302 -11 15492 152 11 16 chr1 38493991 38497379 -204166974 + L1PA14 LINE L1 2799 6158 -3 2154 80 98 0 chr1 38497381 38497657 -204166696 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr1 38497960 38497989 -204166364 + AT_rich Low_complexity Low_complexity 1 29 0 184 338 0 0 chr1 38498480 38498557 -204165796 + L2 LINE L2 1004 1080 -2234 2434 95 10 0 chr1 38498751 38499057 -204165296 - AluSg SINE Alu -1 309 1 1436 182 4 32 chr1 38499059 38499312 -204165041 - AluJo SINE Alu -18 294 49 224 316 18 0 chr1 38499400 38499457 -204164896 - L2 LINE L2 0 3313 3256 541 289 50 35 chr1 38499579 38499718 -204164635 + L1MC4 LINE L1 5635 5770 -2038 2032 122 14 7 chr1 38499718 38500013 -204164340 + AluSx SINE Alu 1 297 -15 2206 97 0 0 chr1 38500013 38500300 -204164053 + AluY SINE Alu 1 288 -23 541 289 50 35 chr1 38500300 38500311 -204164042 + L1MC4 LINE L1 5770 5779 -2029 275 26 51 0 chr1 38500311 38500350 -204164003 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2440 83 0 3 chr1 38500350 38500662 -204163691 + AluY SINE Alu 1 311 0 541 289 50 35 chr1 38500662 38500847 -204163506 + L1MC4 LINE L1 5778 5978 -1830 2395 100 0 0 chr1 38500928 38501237 -204163116 - AluSg SINE Alu -1 309 1 440 316 47 51 chr1 38501318 38501395 -204162958 + L2 LINE L2 2735 2811 -461 2240 92 7 10 chr1 38501395 38501698 -204162655 + AluSc SINE Alu 1 302 -7 440 316 47 51 chr1 38501698 38502074 -204162279 + L2 LINE L2 2811 3272 0 483 345 138 28 chr1 38502083 38502474 -204161879 - L2 LINE L2 -2519 795 362 5882 136 31 17 chr1 38503370 38504916 -204159437 - L1MA4A LINE L1 -7 7358 5806 236 217 24 36 chr1 38504925 38505008 -204159345 + L1MC4 LINE L1 6614 6695 -1347 242 109 0 0 chr1 38505010 38505056 -204159297 + LTR66 LTR ERVL 394 439 -171 381 93 0 0 chr1 38505056 38505110 -204159243 + (TA)n Simple_repeat Simple_repeat 2 55 0 1262 178 0 5 chr1 38505117 38505319 -204159034 - AluJo SINE Alu -24 288 88 567 92 31 0 chr1 38505344 38505442 -204158911 - L1 LINE L1 -1404 4742 4642 1226 187 0 52 chr1 38505447 38505677 -204158676 + AluJo SINE Alu 5 222 -90 7676 167 42 36 chr1 38505677 38506748 -204157605 - L1MA4A LINE L1 -2164 5044 3955 1684 161 27 0 chr1 38506748 38507009 -204157344 - AluJo SINE Alu -12 300 33 7676 167 42 36 chr1 38507009 38507725 -204156628 - L1MA4A LINE L1 -3253 3955 3245 694 171 8 16 chr1 38507730 38507853 -204156500 - FLAM_C SINE Alu -10 133 12 7401 136 51 26 chr1 38507862 38508703 -204155650 - L1MA4A LINE L1 -3956 3253 2360 1614 188 43 0 chr1 38508703 38508985 -204155368 - AluJb SINE Alu -18 294 1 7401 136 51 26 chr1 38508985 38509575 -204154778 - L1MA4A LINE L1 -4849 2360 1786 3493 212 77 26 chr1 38509602 38510452 -204153901 - L1MA4A LINE L1 -6224 985 93 1895 101 72 0 chr1 38510638 38510915 -204153438 + AluSx SINE Alu 1 297 -15 2596 71 0 0 chr1 38513237 38513547 -204150806 + AluY SINE Alu 1 310 -1 1572 109 87 0 chr1 38513555 38513784 -204150569 + AluSg SINE Alu 60 308 -2 722 240 87 58 chr1 38514094 38514336 -204150017 + MIR SINE MIR 14 262 0 223 300 148 74 chr1 38514349 38514579 -204149774 + L2 LINE L2 3001 3247 -25 180 176 0 0 chr1 38516028 38516062 -204148291 + T-rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr1 38516275 38516297 -204148056 + (A)n Simple_repeat Simple_repeat 1 22 0 2302 130 0 0 chr1 38516968 38517276 -204147077 + AluSx SINE Alu 1 308 -4 439 264 25 41 chr1 38519545 38519601 -204144752 + L2 LINE L2 3153 3208 -64 1814 173 10 3 chr1 38519601 38519901 -204144452 - AluJo SINE Alu -10 302 1 439 264 25 41 chr1 38519901 38519965 -204144388 + L2 LINE L2 3208 3271 -1 2441 112 0 0 chr1 38519997 38520309 -204144044 - AluSx SINE Alu 0 312 1 488 297 133 6 chr1 38520827 38521055 -204143298 - MIR SINE MIR -8 254 3 2209 131 0 3 chr1 38522745 38523050 -204141303 + AluSx SINE Alu 1 304 -8 287 313 36 0 chr1 38523281 38523364 -204140989 - L2 LINE L2 -2 3311 3226 678 310 71 22 chr1 38523404 38523769 -204140584 + L1MEc LINE L1 35 417 -5979 787 319 119 36 chr1 38524237 38524291 -204140062 - L2 LINE L2 -810 2504 2456 2048 104 61 0 chr1 38524291 38524569 -204139784 + AluSg SINE Alu 1 295 -15 787 319 119 36 chr1 38524569 38525214 -204139139 - L2 LINE L2 -858 2456 1747 184 163 302 0 chr1 38525231 38525274 -204139079 + L2 LINE L2 3258 3313 0 949 156 59 9 chr1 38525454 38525688 -204138665 + L1M4 LINE L1 5468 5711 -473 22 35 0 0 chr1 38525745 38525774 -204138579 + AT_rich Low_complexity Low_complexity 1 29 0 357 242 24 18 chr1 38525790 38525955 -204138398 + (TA)n Simple_repeat Simple_repeat 1 166 0 245 207 12 37 chr1 38525967 38526049 -204138304 + (TA)n Simple_repeat Simple_repeat 1 80 0 2671 120 12 0 chr1 38526050 38526474 -204137879 + L1MB7 LINE L1 5646 6074 -110 2094 138 3 0 chr1 38526499 38526795 -204137558 + AluSx SINE Alu 1 297 -15 260 249 83 41 chr1 38527181 38527350 -204137003 + Charlie7 DNA MER1_type 2434 2609 -3 368 349 91 42 chr1 38527365 38527710 -204136643 + L2 LINE L2 2770 3147 -125 1781 170 42 0 chr1 38527710 38527998 -204136355 - AluJb SINE Alu -12 300 1 368 349 91 42 chr1 38527998 38528129 -204136224 + L2 LINE L2 3147 3270 -2 405 238 90 25 chr1 38528500 38528622 -204135731 - L2 LINE L2 0 3313 3184 234 238 123 94 chr1 38529297 38529398 -204134955 - L1ME LINE L1 -195 5926 5829 760 173 24 0 chr1 38529398 38529525 -204134828 - FLAM_A SINE Alu -3 130 1 234 238 123 94 chr1 38529525 38529763 -204134590 - L1ME LINE L1 -292 5829 5577 433 275 136 31 chr1 38529773 38529968 -204134385 - L1ME LINE L1 -611 5510 5326 2271 113 0 3 chr1 38529968 38530278 -204134075 - AluSx SINE Alu -3 309 1 433 275 136 31 chr1 38530278 38530310 -204134043 - L1ME LINE L1 -795 5326 5299 2197 93 3 17 chr1 38530724 38531015 -204133338 + AluSc SINE Alu 3 289 -20 781 267 18 24 chr1 38531050 38531300 -204133053 + MIR SINE MIR 3 251 -11 1153 217 52 22 chr1 38531308 38531452 -204132901 + AluJo SINE Alu 3 141 -171 1981 134 7 49 chr1 38531452 38531758 -204132595 + AluSx SINE Alu 4 296 -16 1153 217 52 22 chr1 38531758 38531885 -204132468 + AluJo SINE Alu 141 282 -30 297 0 0 0 chr1 38532370 38532403 -204131950 + (GAAA)n Simple_repeat Simple_repeat 1 33 0 199 273 227 38 chr1 38532616 38532748 -204131605 - MIR SINE MIR -36 226 70 333 287 10 40 chr1 38533452 38533553 -204130800 + MIR3 SINE MIR 9 106 -102 246 176 98 0 chr1 38533649 38533700 -204130653 + Charlie8 DNA MER1_type 222 277 -2140 243 88 0 0 chr1 38537078 38537112 -204127241 + (CTG)n Simple_repeat Simple_repeat 3 36 0 255 228 25 25 chr1 38537650 38537729 -204126624 + CT-rich Low_complexity Low_complexity 2 80 0 234 278 8 90 chr1 38538486 38538619 -204125734 + L3b LINE CR1 1332 1453 -130 232 343 112 28 chr1 38538701 38538879 -204125474 + L3b LINE CR1 1362 1554 -29 191 36 36 0 chr1 38540180 38540208 -204124145 + (CA)n Simple_repeat Simple_repeat 2 30 0 622 326 62 5 chr1 38541506 38541730 -204122623 - MIR SINE MIR -6 256 20 614 248 111 0 chr1 38543638 38543791 -204120562 - MIR SINE MIR -72 190 21 459 0 0 0 chr1 38545289 38545340 -204119013 + (CA)n Simple_repeat Simple_repeat 1 51 0 183 286 20 0 chr1 38545380 38545429 -204118924 + L2 LINE L2 3253 3302 -11 442 305 115 20 chr1 38545500 38545700 -204118653 - MIR SINE MIR -27 235 17 319 218 64 0 chr1 38545824 38545902 -204118451 - Charlie8 DNA MER1_type -2244 173 91 2037 159 3 0 chr1 38546278 38546586 -204117767 + AluJo SINE Alu 1 309 -3 765 309 177 29 chr1 38546707 38546920 -204117433 - L2 LINE L2 -338 2976 2796 802 169 0 8 chr1 38546920 38547050 -204117303 - FLAM_C SINE Alu -3 130 2 765 309 177 29 chr1 38547050 38547561 -204116792 - L2 LINE L2 -518 2796 2145 249 296 0 0 chr1 38548489 38548543 -204115810 - L2 LINE L2 -8 3264 3211 267 340 154 26 chr1 38548642 38548798 -204115555 - L2 LINE L2 -532 2782 2607 962 214 0 6 chr1 38548800 38548973 -204115380 - MER5A DNA MER1_type -1 188 17 318 102 2 0 chr1 38548975 38549026 -204115327 - FLAM_A SINE Alu -31 102 58 421 307 63 89 chr1 38549137 38549491 -204114862 - L2 LINE L2 -773 2541 2202 2242 124 3 0 chr1 38549491 38549790 -204114563 + AluSx SINE Alu 1 300 -12 421 307 63 89 chr1 38549790 38549943 -204114410 - L2 LINE L2 -1112 2202 2047 265 247 56 130 chr1 38550549 38550707 -204113646 - MIR3 SINE MIR -31 177 32 842 224 89 14 chr1 38550707 38550921 -204113432 + MIR SINE MIR 2 231 -31 228 353 121 0 chr1 38551631 38551747 -204112606 - MIR SINE MIR -63 145 16 25 31 0 0 chr1 38551907 38551939 -204112414 + GC_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 38552849 38552887 -204111466 + GC_rich Low_complexity Low_complexity 1 38 0 202 217 17 0 chr1 38554306 38554366 -204109987 + (TG)n Simple_repeat Simple_repeat 1 61 0 200 217 52 0 chr1 38555594 38555709 -204108644 + (CCCCAG)n Simple_repeat Simple_repeat 1 121 0 1316 65 0 27 chr1 38556919 38557103 -204107250 + AluSc SINE Alu 118 296 -13 603 189 81 0 chr1 38557382 38557469 -204106884 + MER96B DNA MER1_type? 5 84 -333 2176 80 40 0 chr1 38557469 38557769 -204106584 + AluSx SINE Alu 1 312 0 2215 84 0 7 chr1 38557771 38558070 -204106283 + AluSq SINE Alu 1 297 -16 1822 131 32 0 chr1 38558072 38558354 -204105999 - AluSx SINE Alu -21 291 1 603 189 81 0 chr1 38558354 38558408 -204105945 + MER96B DNA MER1_type? 84 164 -253 181 261 89 51 chr1 38558492 38558584 -204105769 - L2 LINE L2 -530 2784 2682 2206 104 0 10 chr1 38558584 38558891 -204105462 + AluSq SINE Alu 1 304 -9 181 261 89 51 chr1 38558891 38558955 -204105398 - L2 LINE L2 -632 2682 2622 418 238 0 95 chr1 38559060 38559138 -204105215 + MER5A DNA MER1_type 1 60 -129 2309 45 0 49 chr1 38559138 38559446 -204104907 + AluY SINE Alu 1 293 -18 418 238 0 95 chr1 38559446 38559514 -204104839 + MER5A DNA MER1_type 60 133 -56 3421 205 40 50 chr1 38559516 38560227 -204104126 - L1MB8 LINE L1 0 6178 5461 2275 92 3 0 chr1 38560227 38560531 -204103822 - AluSp SINE Alu -8 305 1 2074 114 0 13 chr1 38560531 38560837 -204103516 - AluSg SINE Alu -8 302 1 3421 205 40 50 chr1 38560837 38561124 -204103229 - L1MB8 LINE L1 -715 5463 5189 28 48 0 0 chr1 38561124 38561166 -204103187 + AT_rich Low_complexity Low_complexity 1 42 0 816 156 0 0 chr1 38561166 38561294 -204103059 - FLAM_C SINE Alu -7 136 9 868 188 6 61 chr1 38561298 38561479 -204102874 - FAM SINE Alu 0 175 5 712 180 0 50 chr1 38561484 38561551 -204102802 - L1MB8 LINE L1 -951 5195 5126 2162 104 10 0 chr1 38561551 38561860 -204102493 - AluSx SINE Alu 0 312 1 712 180 0 50 chr1 38561860 38561953 -204102400 - L1MB8 LINE L1 -1020 5126 5043 842 138 8 0 chr1 38561972 38562102 -204102251 - AluSq/x SINE Alu -182 131 1 351 0 0 0 chr1 38562263 38562302 -204102051 + (TG)n Simple_repeat Simple_repeat 1 39 0 1750 144 24 27 chr1 38562764 38563062 -204101291 - AluJo SINE Alu -15 297 1 1852 125 54 0 chr1 38563197 38563493 -204100860 - AluJo SINE Alu 0 312 1 449 217 75 0 chr1 38563877 38563983 -204100370 + Charlie8 DNA MER1_type 38 151 -2266 1325 140 20 120 chr1 38564134 38564422 -204099931 + MER33 DNA MER1_type 5 253 -2332 1940 131 0 14 chr1 38564422 38564719 -204099634 + AluJb SINE Alu 1 293 -19 1325 140 20 120 chr1 38564719 38564781 -204099572 + MER33 DNA MER1_type 253 320 -4 269 360 53 9 chr1 38564863 38564977 -204099376 + MIR SINE MIR 2 120 -142 207 376 40 10 chr1 38565449 38565550 -204098803 + L2 LINE L2 3153 3256 -16 724 232 111 31 chr1 38565550 38565786 -204098567 + MIR SINE MIR 4 255 -7 2362 81 3 0 chr1 38566017 38566324 -204098029 + AluSg SINE Alu 1 308 -2 380 331 9 17 chr1 38566775 38566922 -204097431 + MIR SINE MIR 5 148 -62 432 0 0 0 chr1 38567848 38567896 -204096457 + (TG)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr1 38568153 38568174 -204096179 + (TG)n Simple_repeat Simple_repeat 1 21 0 222 160 0 0 chr1 38568933 38568983 -204095370 + (TG)n Simple_repeat Simple_repeat 2 51 0 2233 90 0 3 chr1 38570346 38570647 -204093706 - AluSq SINE Alu -13 300 1 1775 151 14 3 chr1 38570665 38570957 -204093396 + AluJb SINE Alu 1 295 -17 2121 113 35 56 chr1 38570989 38571055 -204093298 - MLT1A1 LTR MaLR 0 365 299 1909 141 17 0 chr1 38571055 38571352 -204093001 - AluSx SINE Alu -10 302 1 2121 113 35 56 chr1 38571352 38571658 -204092695 - MLT1A1 LTR MaLR -66 299 1 221 146 21 0 chr1 38571674 38571722 -204092631 + GA-rich Low_complexity Low_complexity 2 50 0 1557 158 108 0 chr1 38571722 38572001 -204092352 + AluJo SINE Alu 1 309 -3 428 302 201 0 chr1 38572476 38572655 -204091698 + MIR SINE MIR 48 262 0 394 260 68 62 chr1 38572839 38572985 -204091368 + MIR SINE MIR 68 214 -48 1436 274 313 20 chr1 38574650 38575741 -204088612 + L2 LINE L2 1566 2975 -339 656 246 114 23 chr1 38576063 38576283 -204088070 - MER113 DNA MER1_type? -33 488 249 214 224 132 13 chr1 38576414 38576490 -204087863 + MIR SINE MIR 174 258 -4 217 256 105 47 chr1 38576552 38576638 -204087715 - MIR3 SINE MIR -41 167 77 1994 139 3 3 chr1 38576984 38577287 -204087066 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr1 38577287 38577310 -204087043 + AT_rich Low_complexity Low_complexity 1 23 0 268 309 150 48 chr1 38578225 38578510 -204085843 - L2 LINE L2 -443 2871 2536 1751 154 3 35 chr1 38578510 38578822 -204085531 + AluJo SINE Alu 1 302 -10 268 309 150 48 chr1 38578822 38578915 -204085438 - L2 LINE L2 -778 2536 2454 1216 182 34 19 chr1 38578915 38579179 -204085174 + L1MD3 LINE L1 7727 7994 -1 352 353 81 23 chr1 38579182 38579403 -204084950 - L2 LINE L2 -853 2461 2228 446 286 30 8 chr1 38579512 38579645 -204084708 - MIR SINE MIR -3 259 124 2304 76 0 22 chr1 38579717 38580033 -204084320 - AluSx SINE Alu -3 309 1 298 203 72 0 chr1 38580398 38580467 -204083886 + MER5A DNA MER1_type 2 75 -114 501 227 30 0 chr1 38580562 38580694 -204083659 + L1MC4a LINE L1 5760 5895 -1913 1731 155 13 13 chr1 38580710 38581014 -204083339 + AluJb SINE Alu 1 304 -8 2253 84 0 0 chr1 38581159 38581455 -204082898 - AluSc SINE Alu -13 296 1 21 0 0 0 chr1 38581531 38581552 -204082801 + AT_rich Low_complexity Low_complexity 1 21 0 526 193 128 0 chr1 38582056 38582165 -204082188 - L2 LINE L2 -6 3307 3185 1381 137 105 25 chr1 38582427 38582704 -204081649 + AluJo SINE Alu 1 299 -13 2299 68 3 3 chr1 38583161 38583455 -204080898 + AluSq SINE Alu 5 298 -15 408 263 53 58 chr1 38583463 38583653 -204080700 + MER5A DNA MER1_type 1 189 0 6480 124 44 23 chr1 38584848 38586742 -204077611 + L1MA5A LINE L1 4125 6063 -234 2198 102 0 0 chr1 38586742 38587047 -204077306 + AluSx SINE Alu 1 305 -7 6480 124 44 23 chr1 38587047 38587287 -204077066 + L1MA5A LINE L1 6063 6297 0 1395 122 0 9 chr1 38588368 38588598 -204075755 + L1MA2 LINE L1 6077 6304 0 1456 180 4 8 chr1 38588816 38589077 -204075276 + AluJo SINE Alu 1 260 -52 2273 84 0 3 chr1 38589143 38589453 -204074900 - AluSg SINE Alu -1 309 1 920 196 0 11 chr1 38590023 38590202 -204074151 - AluJo SINE Alu -33 279 103 1853 111 4 11 chr1 38590409 38590679 -204073674 + AluSx SINE Alu 26 293 -19 180 0 0 0 chr1 38590680 38590700 -204073653 + (GA)n Simple_repeat Simple_repeat 1 20 0 733 154 0 0 chr1 38590701 38590811 -204073542 - AluJo SINE Alu -201 111 2 190 300 16 29 chr1 38591092 38591187 -204073166 + MIR SINE MIR 86 183 -25 1192 186 116 25 chr1 38592098 38592373 -204071980 + AluJo SINE Alu 1 300 -2 351 284 68 49 chr1 38592617 38592779 -204071574 + MIR SINE MIR 84 248 -14 254 143 0 82 chr1 38592873 38592922 -204071431 + L2 LINE L2 3210 3254 -18 528 233 70 8 chr1 38593801 38593930 -204070423 + MIR SINE MIR 124 260 -2 440 313 26 57 chr1 38594874 38595066 -204069287 - MIR3 SINE MIR -3 205 20 927 198 24 0 chr1 38595235 38595402 -204068951 - FAM SINE Alu 0 175 5 2055 114 3 0 chr1 38595899 38596189 -204068164 - AluSx SINE Alu -21 291 1 366 337 84 16 chr1 38598240 38598430 -204065923 + MIR SINE MIR 54 256 -6 597 144 0 0 chr1 38599346 38599436 -204064917 - AluSg/x SINE Alu -14 298 209 1123 68 14 0 chr1 38599437 38599585 -204064768 + AluY SINE Alu 150 299 -12 1622 96 0 5 chr1 38599587 38599807 -204064546 - AluSq SINE Alu -94 219 1 38 22 0 0 chr1 38599837 38599882 -204064471 + AT_rich Low_complexity Low_complexity 1 45 0 1886 128 38 0 chr1 38600568 38600856 -204063497 + AluSg SINE Alu 1 299 -11 252 86 0 0 chr1 38601652 38601687 -204062666 + (A)n Simple_repeat Simple_repeat 1 35 0 183 42 0 0 chr1 38603007 38603031 -204061322 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2200 119 0 0 chr1 38603312 38603622 -204060731 + AluSx SINE Alu 1 310 -2 2160 96 0 3 chr1 38603623 38603914 -204060439 + AluSc SINE Alu 2 291 -18 2328 86 0 0 chr1 38604322 38604624 -204059729 + AluY SINE Alu 1 302 -9 1998 128 0 3 chr1 38604689 38604979 -204059374 - AluSx SINE Alu -23 289 1 622 143 151 0 chr1 38605628 38605754 -204058599 + MER3 DNA MER1_type 2 146 -63 602 110 0 11 chr1 38605806 38605897 -204058456 + MER3 DNA MER1_type 120 209 0 321 135 0 19 chr1 38605853 38605905 -204058448 - MER3 DNA MER1_type -119 90 40 * 960 133 51 6 chr1 38605966 38606124 -204058229 + AluJb SINE Alu 142 306 -6 1651 166 32 7 chr1 38606215 38606499 -204057854 + AluJb SINE Alu 1 291 -21 573 232 209 11 chr1 38606500 38606677 -204057676 - MIR SINE MIR -49 213 2 27 0 0 26 chr1 38607420 38607438 -204056915 + AT_rich Low_complexity Low_complexity 1 18 -19 324 0 0 0 chr1 38607438 38607474 -204056879 + (TA)n Simple_repeat Simple_repeat 2 37 0 27 0 0 26 chr1 38607474 38607493 -204056860 + AT_rich Low_complexity Low_complexity 18 37 0 221 193 193 12 chr1 38608026 38608109 -204056244 - MIR SINE MIR -56 206 109 1884 168 0 7 chr1 38608379 38608682 -204055671 + AluJb SINE Alu 12 312 0 2216 110 3 23 chr1 38608728 38609036 -204055317 + AluSp SINE Alu 1 302 -11 4435 133 27 1 chr1 38609136 38609842 -204054511 + L1MC1 LINE L1 5595 6318 -15 1626 180 30 20 chr1 38610580 38610885 -204053468 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr1 38610935 38610958 -204053395 + AT_rich Low_complexity Low_complexity 1 23 0 293 250 0 12 chr1 38611329 38611413 -204052940 - MIR SINE MIR -5 257 175 1943 157 0 3 chr1 38611453 38611753 -204052600 + AluJb SINE Alu 1 299 -13 22 0 0 0 chr1 38611753 38611775 -204052578 + AT_rich Low_complexity Low_complexity 1 22 0 1986 155 0 10 chr1 38611777 38612087 -204052266 + AluSx SINE Alu 1 307 -5 187 309 138 11 chr1 38613109 38613203 -204051150 - MIR SINE MIR -64 144 39 1861 171 0 7 chr1 38613216 38613520 -204050833 - AluJo SINE Alu -10 302 1 1639 142 21 98 chr1 38613616 38613819 -204050534 - AluJo SINE Alu -1 311 143 2418 88 3 0 chr1 38613819 38614115 -204050238 + AluSp SINE Alu 1 297 -16 1639 142 21 98 chr1 38614115 38614248 -204050105 - AluJo SINE Alu -169 143 1 2585 68 0 3 chr1 38614390 38614699 -204049654 + AluSc SINE Alu 1 308 -1 2145 135 72 3 chr1 38614759 38615122 -204049231 + MLT1B LTR MaLR 1 388 -2 1943 162 12 17 chr1 38615365 38615711 -204048642 - MER2 DNA MER2_type 0 344 1 272 285 132 14 chr1 38616702 38616846 -204047507 + L1ME4a LINE L1 5949 6109 -12 22 56 0 0 chr1 38616870 38616906 -204047447 + AT_rich Low_complexity Low_complexity 1 36 0 281 301 107 0 chr1 38617237 38617340 -204047013 + MIR SINE MIR 30 143 -65 2502 84 0 0 chr1 38617813 38618124 -204046229 + AluSx SINE Alu 1 311 -1 426 257 189 6 chr1 38618718 38618893 -204045460 - MIR SINE MIR -38 224 18 458 17 17 0 chr1 38618894 38618953 -204045400 + (CTATA)n Simple_repeat Simple_repeat 4 63 0 311 289 113 25 chr1 38619124 38619283 -204045070 - MIR SINE MIR -26 236 64 2081 101 11 3 chr1 38619769 38620055 -204044298 + AluSp SINE Alu 20 307 -6 2394 48 65 0 chr1 38620792 38621086 -204043267 + AluSp SINE Alu 1 313 0 1719 94 37 4 chr1 38621449 38621694 -204042659 + AluSg SINE Alu 54 306 -4 363 226 26 0 chr1 38621694 38621809 -204042544 + L1ME1 LINE L1 5325 5442 -722 2297 95 0 3 chr1 38621961 38622257 -204042096 + AluSg SINE Alu 2 296 -14 2248 94 7 7 chr1 38622336 38622633 -204041720 + AluSq SINE Alu 1 297 -16 180 0 0 0 chr1 38623346 38623366 -204040987 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 38623595 38623616 -204040737 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 38623659 38623682 -204040671 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 461 163 12 0 chr1 38623688 38623768 -204040585 - FRAM/FAM SINE Alu -96 80 1 972 170 15 78 chr1 38623971 38624177 -204040176 - MER58A DNA MER1_type -31 193 1 203 327 93 0 chr1 38624188 38624295 -204040058 + MIR SINE MIR 30 146 -62 1279 250 80 37 chr1 38624606 38625042 -204039311 + LTR16A1 LTR ERVL 1 455 -2 622 294 52 45 chr1 38625047 38625336 -204039017 + HERV16 LTR ERVL 2 292 -4704 1266 182 101 12 chr1 38625367 38625625 -204038728 + AluJo SINE Alu 1 281 -31 261 139 0 0 chr1 38625641 38625684 -204038669 + (GA)n Simple_repeat Simple_repeat 2 44 0 1094 103 0 20 chr1 38625732 38625878 -204038475 + AluY SINE Alu 1 143 -168 2361 57 0 4 chr1 38625879 38626185 -204038168 + AluY SINE Alu 1 305 0 1518 224 55 24 chr1 38626185 38626492 -204037861 + L1MEc LINE L1 1888 2215 -4181 2512 85 0 0 chr1 38626492 38626798 -204037555 + AluY SINE Alu 1 306 -5 1518 224 55 24 chr1 38626798 38626941 -204037412 + L1MEc LINE L1 2215 2352 -4044 1464 190 114 49 chr1 38626948 38627396 -204036957 + L1ME1 LINE L1 5685 6161 -5 635 289 108 23 chr1 38627405 38627558 -204036795 + ERVL LTR ERVL 2306 2445 -3319 2184 104 7 0 chr1 38627558 38627866 -204036487 + AluSx SINE Alu 2 311 0 635 289 108 23 chr1 38627866 38628064 -204036289 + ERVL LTR ERVL 2445 2688 -3076 307 279 112 52 chr1 38628423 38628710 -204035643 + MER89-int LTR ERV1 6365 6668 -133 713 322 119 4 chr1 38629364 38629774 -204034579 + ERVL LTR ERVL 3027 3547 -2217 451 310 105 36 chr1 38629787 38630119 -204034234 + ERVL LTR ERVL 4552 5262 -90 940 230 97 53 chr1 38630235 38630586 -204033767 + LTR16A1 LTR ERVL 48 457 0 643 269 19 64 chr1 38631678 38631787 -204032566 + MIR SINE MIR 1 113 -149 2107 131 0 0 chr1 38631787 38632078 -204032275 - AluJo SINE Alu -21 291 1 643 269 19 64 chr1 38632078 38632232 -204032121 + MIR SINE MIR 113 252 -10 2418 76 0 7 chr1 38632684 38632988 -204031365 + AluSg1 SINE Alu 1 302 -7 183 162 0 0 chr1 38634664 38634701 -204029652 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 249 250 26 40 chr1 38634739 38634815 -204029538 - L2 LINE L2 -202 3070 2996 597 226 90 66 chr1 38634815 38635027 -204029326 + MIR SINE MIR 2 218 -44 501 184 55 0 chr1 38635252 38635361 -204028992 - L1MD3 LINE L1 0 7995 7881 188 369 50 14 chr1 38635376 38635517 -204028836 - L2 LINE L2 -575 2739 2594 805 258 13 26 chr1 38636001 38636234 -204028119 + MIR SINE MIR 3 232 -30 226 321 71 18 chr1 38636306 38636418 -204027935 + L2 LINE L2 3188 3305 -8 1576 180 14 34 chr1 38637141 38637283 -204027070 + AluJo SINE Alu 1 144 -168 1499 160 63 4 chr1 38637283 38637551 -204026802 + AluJb SINE Alu 14 297 -15 1576 180 14 34 chr1 38637551 38637702 -204026651 + AluJo SINE Alu 144 288 -24 243 0 0 0 chr1 38637703 38637717 -204026636 + (TG)n Simple_repeat Simple_repeat 1 41 0 243 0 0 0 chr1 38637717 38637744 -204026609 + (TG)n Simple_repeat Simple_repeat 2 28 0 454 284 50 11 chr1 38638191 38638392 -204025961 - MIR3 SINE MIR -53 209 3 328 287 65 0 chr1 38638984 38639092 -204025261 + MIR SINE MIR 63 177 -85 440 131 0 0 chr1 38639094 38639155 -204025198 + AluS SINE Alu 2 62 -256 348 43 0 0 chr1 38640028 38640074 -204024279 + (TG)n Simple_repeat Simple_repeat 1 46 0 1981 128 10 20 chr1 38640075 38640379 -204023974 - AluJo SINE Alu -9 303 3 204 256 0 0 chr1 38640766 38640809 -204023544 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2360 71 0 3 chr1 38640969 38641281 -204023072 - AluY SINE Alu 0 311 1 2182 225 141 82 chr1 38641358 38641485 -204022868 - HAL1 LINE L1 -5 2502 2384 2185 124 3 7 chr1 38641485 38641610 -204022743 + AluSx SINE Alu 1 125 -187 225 0 0 0 chr1 38641610 38641635 -204022718 + (CA)n Simple_repeat Simple_repeat 2 26 0 2185 124 3 7 chr1 38641635 38641816 -204022537 + AluSx SINE Alu 125 306 -6 2182 225 141 82 chr1 38641816 38642469 -204021884 - HAL1 LINE L1 -123 2384 1771 1849 155 7 10 chr1 38642469 38642766 -204021587 + AluSx SINE Alu 1 296 -16 2182 225 141 82 chr1 38642766 38642856 -204021497 - HAL1 LINE L1 -736 1771 1688 2354 106 0 0 chr1 38642856 38643159 -204021194 - AluSc SINE Alu -6 303 1 2182 225 141 82 chr1 38643159 38643475 -204020878 - HAL1 LINE L1 -819 1688 1244 1965 126 4 14 chr1 38643488 38643815 -204020538 - AluSx SINE Alu 0 334 11 305 278 110 47 chr1 38643831 38644022 -204020331 - HAL1 LINE L1 -1811 696 494 852 216 78 85 chr1 38644062 38644209 -204020144 - AluJo SINE Alu -31 281 134 2126 144 0 7 chr1 38644209 38644514 -204019839 - AluSx SINE Alu -9 303 1 189 0 0 0 chr1 38644514 38644535 -204019818 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2106 110 4 4 chr1 38644535 38644816 -204019537 - AluSc SINE Alu -28 281 1 852 216 78 85 chr1 38644816 38644949 -204019404 - AluJo SINE Alu -175 137 1 658 267 158 43 chr1 38644949 38645372 -204018981 - HAL1 LINE L1 -2034 473 2 1169 210 107 27 chr1 38646711 38647011 -204017342 + MER33 DNA MER1_type 1 324 0 198 0 0 0 chr1 38647740 38647762 -204016591 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 577 234 450 19 chr1 38648127 38648311 -204016042 - L1ME3 LINE L1 -49 6121 6017 2386 71 7 10 chr1 38648311 38648483 -204015870 - AluSp SINE Alu -6 307 135 2417 76 0 16 chr1 38648483 38648787 -204015566 - AluY SINE Alu -12 299 1 2386 71 7 10 chr1 38648787 38648922 -204015431 - AluSp SINE Alu -178 135 1 577 234 450 19 chr1 38648922 38648975 -204015378 - L1ME3 LINE L1 -153 6017 5856 1655 164 30 0 chr1 38649106 38649368 -204014985 + AluJb SINE Alu 11 280 -32 248 147 0 107 chr1 38649419 38649494 -204014859 + (TTCTCC)n Simple_repeat Simple_repeat 6 72 0 1857 145 68 70 chr1 38649638 38649815 -204014538 + MLT1C LTR MaLR 3 179 -211 324 48 0 0 chr1 38649815 38649857 -204014496 + (CA)n Simple_repeat Simple_repeat 2 43 0 1857 145 68 70 chr1 38649857 38650083 -204014270 + MLT1C LTR MaLR 179 325 -65 468 0 0 0 chr1 38650083 38650135 -204014218 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 2221 123 7 0 chr1 38650145 38650447 -204013906 - AluSx SINE Alu -7 305 2 481 193 14 7 chr1 38650448 38650588 -204013765 + CT-rich Low_complexity Low_complexity 2 142 0 1782 163 7 10 chr1 38650607 38650913 -204013440 - AluJb SINE Alu -2 310 6 299 236 28 0 chr1 38650919 38650991 -204013362 + MLT1C LTR MaLR 394 467 0 205 240 142 0 chr1 38652036 38652125 -204012228 + MIR SINE MIR 44 153 -62 2252 121 45 37 chr1 38652177 38652308 -204012045 + L1MB3 LINE L1 5776 5905 -278 2366 83 0 3 chr1 38652308 38652610 -204011743 - AluSx SINE Alu -11 301 1 2252 121 45 37 chr1 38652610 38652882 -204011471 + L1MB3 LINE L1 5905 6182 -1 196 329 188 0 chr1 38653098 38653268 -204011085 + MIR SINE MIR 1 202 -60 2112 127 0 19 chr1 38653270 38653577 -204010776 + AluSx SINE Alu 1 301 -11 2518 74 0 10 chr1 38653584 38653896 -204010457 + AluY SINE Alu 1 309 -2 1531 154 81 11 chr1 38653904 38654176 -204010177 + AluJb SINE Alu 1 291 -21 3249 147 4 0 chr1 38654385 38654854 -204009499 + MER70A LTR ERVL 1 471 -1 632 138 9 0 chr1 38654856 38654972 -204009381 + CT-rich Low_complexity Low_complexity 1 117 0 251 238 48 0 chr1 38655145 38655208 -204009145 + MIR SINE MIR 119 184 -78 943 84 8 0 chr1 38655269 38655388 -204008965 + AluSq/x SINE Alu 1 120 -193 373 309 168 25 chr1 38655415 38656125 -204008228 - L2 LINE L2 -778 2536 1726 2078 136 0 0 chr1 38656180 38656474 -204007879 + AluSx SINE Alu 1 294 -18 748 145 0 17 chr1 38656782 38656899 -204007454 - AluJo SINE Alu -176 136 22 307 228 0 0 chr1 38656899 38656956 -204007397 - AluJ/FLAM SINE Alu -245 57 1 2337 90 3 0 chr1 38657011 38657300 -204007053 - AluSp SINE Alu -20 293 4 39 38 0 0 chr1 38657389 38657442 -204006911 + AT_rich Low_complexity Low_complexity 1 53 0 615 103 11 0 chr1 38657469 38657556 -204006797 - AluSq/x SINE Alu -208 104 17 1790 113 0 0 chr1 38658549 38658789 -204005564 - AluSg/x SINE Alu -6 306 67 2372 80 0 23 chr1 38658789 38659089 -204005264 - AluY SINE Alu -18 293 1 760 310 76 53 chr1 38659090 38659412 -204004941 + L2 LINE L2 1384 1697 -1617 1684 169 0 60 chr1 38659412 38659731 -204004622 + AluJo SINE Alu 1 300 -12 760 310 76 53 chr1 38659731 38660092 -204004261 + L2 LINE L2 1697 2083 -1231 516 88 0 0 chr1 38660156 38660236 -204004117 - Alu SINE Alu -1 310 231 1961 119 31 3 chr1 38660236 38660522 -204003831 + AluSq SINE Alu 14 307 -6 2517 69 0 22 chr1 38660525 38660842 -204003511 + AluY SINE Alu 1 310 -1 326 80 20 0 chr1 38660895 38660945 -204003408 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1357 198 81 34 chr1 38660958 38661083 -204003270 + AluJo SINE Alu 1 119 -193 2131 134 0 3 chr1 38661083 38661382 -204002971 - AluJb SINE Alu -14 298 1 1357 198 81 34 chr1 38661382 38661554 -204002799 + AluJo SINE Alu 119 312 0 2370 109 3 0 chr1 38661558 38661870 -204002483 + AluSq SINE Alu 1 313 0 453 314 20 49 chr1 38661877 38662207 -204002146 + L2 LINE L2 2723 3037 -235 332 298 165 46 chr1 38662549 38662767 -204001586 - MIR SINE MIR -2 260 17 263 252 45 81 chr1 38663535 38663646 -204000707 - MIR SINE MIR -70 192 86 702 224 6 7 chr1 38663724 38663902 -204000451 - L1MD3 LINE L1 -1 7994 7606 1946 157 0 0 chr1 38664517 38664826 -203999527 + AluSx SINE Alu 1 309 0 2022 106 50 36 chr1 38664870 38665171 -203999182 + AluSg SINE Alu 1 305 -5 894 156 21 0 chr1 38665756 38665897 -203998456 + FRAM SINE Alu 22 165 -11 681 134 183 49 chr1 38666174 38666338 -203998015 + AluJb SINE Alu 127 312 0 325 257 90 77 chr1 38666363 38666415 -203997938 - L2 LINE L2 -1284 2030 1980 1727 169 10 36 chr1 38666415 38666723 -203997630 + AluJo SINE Alu 5 304 -8 325 257 90 77 chr1 38666723 38666758 -203997595 - L2 LINE L2 -1334 1980 1947 1974 143 17 10 chr1 38666758 38667058 -203997295 + AluSx SINE Alu 1 302 -10 325 257 90 77 chr1 38667058 38667191 -203997162 - L2 LINE L2 -1367 1947 1806 219 69 0 0 chr1 38667814 38667843 -203996510 + (GA)n Simple_repeat Simple_repeat 2 30 0 2322 111 0 0 chr1 38668055 38668362 -203995991 + AluY SINE Alu 1 307 -4 561 239 0 0 chr1 38668447 38668556 -203995797 + FLAM_C SINE Alu 1 109 -34 251 254 0 0 chr1 38668561 38668620 -203995733 + (CAGA)n Simple_repeat Simple_repeat 3 61 0 1955 129 42 32 chr1 38668672 38668981 -203995372 - AluSx SINE Alu 0 312 1 1920 125 68 0 chr1 38668985 38669266 -203995087 - AluJb SINE Alu -1 311 12 2102 153 0 3 chr1 38669305 38669618 -203994735 - AluJb SINE Alu 0 312 1 629 133 0 0 chr1 38670457 38670555 -203993798 + FLAM_C SINE Alu 14 111 -32 414 0 0 0 chr1 38670570 38670616 -203993737 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1017 133 10 71 chr1 38670985 38671181 -203993172 - L1M3 LINE L1 -540 5643 5460 1021 167 65 57 chr1 38671318 38671563 -203992790 + MLT2B1 LTR ERVL 1 247 -273 1756 126 36 76 chr1 38671697 38671851 -203992502 + AluJo SINE Alu 1 139 -173 2289 104 0 7 chr1 38671851 38672159 -203992194 + AluSx SINE Alu 3 308 -4 1756 126 36 76 chr1 38672159 38672306 -203992047 + AluJo SINE Alu 139 290 -22 2506 79 0 3 chr1 38672609 38672912 -203991441 - AluSq SINE Alu -11 302 1 1801 159 13 60 chr1 38672960 38673343 -203991010 + MLT1A1 LTR MaLR 1 365 0 2050 124 0 0 chr1 38673386 38673653 -203990700 + AluSx SINE Alu 1 267 -45 675 200 74 0 chr1 38673695 38673830 -203990523 - AluJb SINE Alu -21 291 147 2348 89 27 0 chr1 38673847 38674139 -203990214 - AluSx SINE Alu -12 300 1 1103 273 63 10 chr1 38674490 38674889 -203989464 - LTR16A LTR ERVL -6 444 25 249 314 143 56 chr1 38674911 38675233 -203989120 + L2 LINE L2 2287 2636 -678 21 0 0 0 chr1 38675462 38675483 -203988870 + AT_rich Low_complexity Low_complexity 1 21 0 601 292 127 9 chr1 38675499 38675821 -203988532 + L1ME4a LINE L1 5563 5922 -199 2547 73 0 0 chr1 38676037 38676340 -203988013 + AluY SINE Alu 2 304 -7 184 128 21 21 chr1 38676434 38676481 -203987872 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 2237 166 15 20 chr1 38676483 38676941 -203987412 - L1MB8 LINE L1 -336 5842 5387 971 169 12 0 chr1 38676946 38677106 -203987247 - FRAM SINE Alu 0 166 5 316 228 55 55 chr1 38677169 38677314 -203987039 - L1ME4a LINE L1 -13 6108 5964 229 232 49 37 chr1 38677412 38677494 -203986859 - L1ME4a LINE L1 -380 5786 5704 555 239 250 11 chr1 38677638 38677826 -203986527 - MIR SINE MIR -18 244 12 2165 113 51 20 chr1 38677969 38678322 -203986031 + THE1B LTR MaLR 1 364 0 276 275 156 24 chr1 38678399 38678610 -203985743 + L2 LINE L2 2641 2879 -435 2357 70 40 3 chr1 38678741 38679040 -203985313 + AluY SINE Alu 2 311 0 600 206 91 43 chr1 38679188 38679441 -203984912 - L1MC5 LINE L1 -36 7925 7661 235 209 16 126 chr1 38679473 38679714 -203984639 - L1MC4a LINE L1 0 7890 7624 1435 172 145 14 chr1 38679714 38680010 -203984343 + MER1B DNA MER1_type 1 335 -2 235 209 16 126 chr1 38680010 38680024 -203984329 - L1MC4a LINE L1 -266 7624 7674 1978 134 0 54 chr1 38680024 38680337 -203984016 - AluJo SINE Alu -16 296 1 235 209 16 126 chr1 38680337 38680406 -203983947 - L1MC4a LINE L1 -215 7675 7600 279 0 0 0 chr1 38680406 38680437 -203983916 + (TC)n Simple_repeat Simple_repeat 2 32 0 1303 159 14 5 chr1 38680477 38680684 -203983669 - AluJo SINE Alu -103 209 1 595 212 59 35 chr1 38680684 38680854 -203983499 - L1MC4 LINE L1 -408 7634 7461 271 363 0 0 chr1 38680974 38681054 -203983299 + L2 LINE L2 3141 3220 -52 206 146 0 24 chr1 38681281 38681322 -203983031 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 358 267 30 61 chr1 38681867 38682032 -203982321 + MER20B DNA MER1_type 17 176 -607 258 105 0 0 chr1 38682086 38682124 -203982229 + (CA)n Simple_repeat Simple_repeat 1 38 0 253 274 12 12 chr1 38682211 38682295 -203982058 + MIR SINE MIR 65 148 -114 1350 174 0 5 chr1 38682297 38682510 -203981843 + AluJo SINE Alu 1 212 -100 658 135 19 0 chr1 38682519 38682657 -203981696 + AluJb SINE Alu 179 318 0 2059 104 87 0 chr1 38682749 38683036 -203981317 + AluSx SINE Alu 1 312 0 1921 135 0 38 chr1 38683548 38683977 -203980376 + AluSx SINE Alu 5 422 0 238 261 29 0 chr1 38684265 38684334 -203980019 + MIR SINE MIR 118 188 -74 1733 128 10 52 chr1 38684666 38684954 -203979399 + AluJo SINE Alu 1 276 -36 2384 87 3 0 chr1 38684961 38685249 -203979104 - AluSx SINE Alu -21 291 3 2035 105 0 0 chr1 38685535 38685802 -203978551 - AluSx SINE Alu -45 267 1 22 0 0 0 chr1 38686705 38686727 -203977626 + GC_rich Low_complexity Low_complexity 1 22 0 601 237 7 26 chr1 38687851 38688003 -203976350 - MIR SINE MIR 0 262 114 2360 113 7 0 chr1 38688819 38689121 -203975232 - AluSx SINE Alu -8 304 1 1458 172 92 8 chr1 38689258 38689520 -203974833 - AluJo SINE Alu -28 284 1 2120 116 14 7 chr1 38690106 38690400 -203973953 + AluSx SINE Alu 1 296 -16 998 257 16 8 chr1 38690475 38690720 -203973633 - MIR SINE MIR -1 261 15 2137 120 7 3 chr1 38690767 38691058 -203973295 + AluSx SINE Alu 1 292 -20 2029 72 91 0 chr1 38691291 38691588 -203972765 + AluY SINE Alu 2 322 0 1845 156 13 22 chr1 38691593 38691908 -203972445 + AluJo SINE Alu 1 312 0 369 184 30 0 chr1 38691908 38691986 -203972367 - MER2 DNA MER2_type -159 80 1 2315 108 13 0 chr1 38692087 38692394 -203971959 - AluSq SINE Alu -2 311 1 200 230 92 35 chr1 38692855 38692942 -203971411 - MIR3 SINE MIR -19 189 98 308 265 214 13 chr1 38695267 38695501 -203968852 + L2 LINE L2 1979 2259 -1055 2200 97 0 0 chr1 38695558 38695827 -203968526 + AluSx SINE Alu 3 271 -41 211 264 0 0 chr1 38696013 38696066 -203968287 + L2 LINE L2 2597 2649 -665 190 250 14 14 chr1 38696134 38696206 -203968147 + L2 LINE L2 2791 2862 -452 2687 61 0 0 chr1 38698320 38698631 -203965722 + AluSx SINE Alu 1 311 -1 2501 76 7 0 chr1 38699284 38699587 -203964766 - AluSg SINE Alu -5 305 1 241 274 14 14 chr1 38699927 38700000 -203964353 + MLT1K LTR MaLR 516 588 0 2361 107 7 0 chr1 38700229 38700529 -203963824 - AluSx SINE Alu -10 302 1 2356 115 0 6 chr1 38700698 38701011 -203963342 + AluSx SINE Alu 1 311 -1 2178 132 16 0 chr1 38701088 38701391 -203962962 - AluSx SINE Alu -4 308 1 2158 141 3 0 chr1 38701473 38701772 -203962581 - AluSx SINE Alu -12 300 1 418 312 132 55 chr1 38702423 38702555 -203961798 - L2 LINE L2 0 3272 3152 2189 123 0 0 chr1 38702555 38702840 -203961513 + AluSx SINE Alu 6 290 -22 418 312 132 55 chr1 38702840 38702948 -203961405 - L2 LINE L2 -120 3152 3054 768 168 0 8 chr1 38702948 38703079 -203961274 - FLAM_C SINE Alu -2 131 2 418 312 132 55 chr1 38703079 38703334 -203961019 - L2 LINE L2 -218 3054 2742 207 0 0 0 chr1 38704994 38705017 -203959336 + (A)n Simple_repeat Simple_repeat 1 23 0 1289 241 126 0 chr1 38705981 38706346 -203958007 - LTR16A LTR ERVL -6 444 34 312 248 111 8 chr1 38706527 38706644 -203957709 - MIR SINE MIR -6 256 128 1964 164 13 0 chr1 38706919 38707223 -203957130 - AluJb SINE Alu -4 308 1 540 0 0 0 chr1 38707763 38707823 -203956530 + (CA)n Simple_repeat Simple_repeat 2 61 0 251 273 128 48 chr1 38708668 38708825 -203955528 - MIR SINE MIR -53 209 51 337 307 32 109 chr1 38708913 38709103 -203955250 - L2 LINE L2 -2 3270 3108 2168 99 6 78 chr1 38709103 38709436 -203954917 + AluSx SINE Alu 1 309 -3 337 307 32 109 chr1 38709436 38709528 -203954825 - L2 LINE L2 -164 3108 3010 1265 117 16 21 chr1 38709529 38709717 -203954636 + AluSg/x SINE Alu 108 294 -18 2489 91 0 0 chr1 38709761 38710070 -203954283 + AluSg SINE Alu 1 309 -1 237 284 26 86 chr1 38710086 38710202 -203954151 - L2 LINE L2 -218 3054 2946 975 322 80 5 chr1 38710281 38710719 -203953634 - L2 LINE L2 -519 2795 2325 2262 110 0 10 chr1 38711800 38712109 -203952244 - AluSx SINE Alu -6 306 1 734 154 73 0 chr1 38712163 38712286 -203952067 - FLAM_C SINE Alu 0 133 2 1666 167 17 14 chr1 38712538 38712826 -203951527 + AluJo SINE Alu 1 289 -23 2189 123 10 3 chr1 38713239 38713547 -203950806 + AluSx SINE Alu 1 310 -2 2260 108 7 0 chr1 38714267 38714564 -203949789 + AluSx SINE Alu 1 299 -13 2195 122 7 3 chr1 38714779 38715082 -203949271 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr1 38715678 38715714 -203948639 + AT_rich Low_complexity Low_complexity 1 36 0 251 330 43 11 chr1 38716476 38716570 -203947783 + MIR SINE MIR 2 98 -164 243 0 0 0 chr1 38716955 38716982 -203947371 + (TA)n Simple_repeat Simple_repeat 2 28 0 2313 101 0 0 chr1 38717642 38717940 -203946413 - AluSg SINE Alu -12 298 1 24 67 0 0 chr1 38718459 38718504 -203945849 + AT_rich Low_complexity Low_complexity 1 45 0 405 197 13 13 chr1 38718507 38718582 -203945771 + Tigger5 DNA MER2_type 4 78 -2245 234 189 0 0 chr1 38718582 38718619 -203945734 - Tigger5 DNA MER2_type -3 2320 2284 351 200 0 0 chr1 38718630 38718690 -203945663 + Tigger5 DNA MER2_type 2264 2323 0 578 242 112 33 chr1 38718700 38718915 -203945438 - MIR SINE MIR -18 244 13 2343 109 0 0 chr1 38719256 38719560 -203944793 - AluSx SINE Alu -8 304 1 375 327 26 7 chr1 38719752 38719905 -203944448 + L3 LINE CR1 690 845 -732 366 264 37 61 chr1 38719912 38720075 -203944278 + L1ME4a LINE L1 5788 5946 -175 1966 114 18 0 chr1 38720182 38720455 -203943898 - AluSq SINE Alu -33 280 3 2479 74 0 7 chr1 38720534 38720843 -203943510 + AluSc SINE Alu 1 307 -2 1273 134 10 5 chr1 38720843 38721037 -203943316 + AluJo SINE Alu 2 196 -116 617 197 85 37 chr1 38721092 38721214 -203943139 + MIR SINE MIR 48 184 -78 2015 105 7 62 chr1 38721214 38721519 -203942834 - AluSx SINE Alu -23 289 2 617 197 85 37 chr1 38721519 38721584 -203942769 + MIR SINE MIR 184 244 -18 1899 102 3 122 chr1 38721585 38721928 -203942425 - AluY SINE Alu -9 302 1 1591 204 14 0 chr1 38722469 38722763 -203941590 - AluJb SINE Alu -14 298 1 3925 144 67 22 chr1 38722825 38723154 -203941199 - L1MB2 LINE L1 -2 6169 5856 1709 163 46 7 chr1 38723154 38723437 -203940916 - AluJb SINE Alu -18 294 1 3925 144 67 22 chr1 38723437 38723654 -203940699 - L1MB2 LINE L1 -315 5856 5650 1953 85 12 8 chr1 38723654 38723912 -203940441 - AluSq SINE Alu -12 301 43 3925 144 67 22 chr1 38723912 38724126 -203940227 - L1MB2 LINE L1 -521 5650 5374 464 211 61 9 chr1 38724527 38724641 -203939712 - L2 LINE L2 0 3313 3194 199 234 31 16 chr1 38724687 38724751 -203939602 - MIR SINE MIR -10 252 188 2140 85 13 23 chr1 38724781 38725086 -203939267 - AluSx SINE Alu -10 302 1 1798 170 13 10 chr1 38725228 38725539 -203938814 - AluJb SINE Alu 0 312 1 2654 46 0 0 chr1 38725882 38726184 -203938169 + AluY SINE Alu 1 302 -9 2428 81 7 3 chr1 38727659 38727966 -203936387 - AluSg SINE Alu -2 308 1 805 119 0 32 chr1 38729053 38729179 -203935174 + FLAM_C SINE Alu 2 123 -10 198 0 0 0 chr1 38729190 38729212 -203935141 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2090 135 30 0 chr1 38729238 38729534 -203934819 - AluSx SINE Alu -7 305 1 24 53 0 0 chr1 38729793 38729831 -203934522 + AT_rich Low_complexity Low_complexity 1 38 0 309 242 0 0 chr1 38730102 38730193 -203934160 + CT-rich Low_complexity Low_complexity 1 91 0 917 246 150 24 chr1 38730663 38731131 -203933222 + L1MC/D LINE L1 5291 5817 -1991 2322 117 0 0 chr1 38731139 38731446 -203932907 + AluSg SINE Alu 1 307 -3 935 261 14 0 chr1 38731473 38731688 -203932665 + MIR SINE MIR 28 245 -17 1837 158 7 10 chr1 38731929 38732232 -203932121 - AluJo SINE Alu -10 302 1 2075 109 0 7 chr1 38733187 38733461 -203930892 - AluSx SINE Alu -13 299 28 1653 174 3 30 chr1 38733945 38734108 -203930245 - AluJb SINE Alu -22 290 137 2337 98 0 20 chr1 38734108 38734414 -203929939 - AluSx SINE Alu -12 300 1 1653 174 3 30 chr1 38734414 38734548 -203929805 - AluJb SINE Alu -175 137 1 1744 160 18 7 chr1 38734550 38734831 -203929522 - AluJo SINE Alu -12 300 17 390 377 10 5 chr1 38735631 38735830 -203928523 + L2 LINE L2 2630 2829 -485 343 272 192 90 chr1 38735874 38736197 -203928156 + L2 LINE L2 2917 3272 0 264 273 210 21 chr1 38736347 38736490 -203927863 + MIR SINE MIR 83 252 -10 927 178 0 41 chr1 38737005 38737174 -203927179 - AluJb SINE Alu -4 308 147 2277 104 0 13 chr1 38737204 38737502 -203926851 + AluSq SINE Alu 1 294 -19 253 313 70 50 chr1 38737576 38737640 -203926713 - MIR SINE MIR -56 206 145 774 179 8 15 chr1 38737640 38737774 -203926579 - FLAM_A SINE Alu 0 133 1 253 313 70 50 chr1 38737774 38737910 -203926443 - MIR SINE MIR -117 145 2 290 241 72 0 chr1 38738000 38738083 -203926270 - L2 LINE L2 0 3272 3184 202 293 143 23 chr1 38738323 38738456 -203925897 + L2 LINE L2 3164 3312 -1 2416 99 0 0 chr1 38738671 38738973 -203925380 - AluSg SINE Alu -8 302 1 366 301 114 8 chr1 38740207 38740330 -203924023 + MER5A DNA MER1_type 1 136 -53 482 187 77 0 chr1 38740331 38740422 -203923931 - Tigger7 DNA MER2_type 0 2491 2394 * 550 122 12 0 chr1 38740421 38740503 -203923850 - Tigger7 DNA MER2_type -466 267 185 1920 158 3 22 chr1 38742624 38742941 -203921412 - AluJb SINE Alu -1 311 1 1695 187 57 82 chr1 38744327 38744836 -203919517 + L1MC5 LINE L1 6957 7452 -509 2338 100 3 3 chr1 38744836 38745136 -203919217 - AluSx SINE Alu -12 300 1 1695 187 57 82 chr1 38745136 38745203 -203919150 + L1MC5 LINE L1 7452 7519 -442 417 228 6 11 chr1 38745214 38745290 -203919063 + (TA)n Simple_repeat Simple_repeat 1 76 -103 2359 85 3 0 chr1 38745290 38745585 -203918768 - AluSp SINE Alu -17 296 1 417 228 6 11 chr1 38745585 38745594 -203918759 + (TA)n Simple_repeat Simple_repeat 76 84 -95 2228 105 27 0 chr1 38745594 38745888 -203918465 - AluSq SINE Alu -11 302 1 417 228 6 11 chr1 38745888 38745981 -203918372 + (TA)n Simple_repeat Simple_repeat 84 179 0 889 199 141 32 chr1 38746086 38746293 -203918060 + L1MC5 LINE L1 7610 7856 -105 2099 134 55 6 chr1 38746293 38746637 -203917716 + MER46B DNA MER2_type 1 236 0 889 199 141 32 chr1 38746637 38746706 -203917647 + L1MC5 LINE L1 7856 7916 -45 2356 102 0 0 chr1 38746929 38747222 -203917131 + AluSg SINE Alu 1 293 -17 1534 132 36 64 chr1 38747253 38747533 -203916820 - AluJb SINE Alu -16 296 25 846 218 73 73 chr1 38747725 38748083 -203916270 - MER96B DNA MER1_type? -57 360 3 233 96 0 0 chr1 38749260 38749312 -203915041 - LTR66 LTR ERVL -165 445 394 234 231 0 0 chr1 38749320 38749372 -203914981 - L1MC4 LINE L1 -1339 6703 6652 2247 72 7 46 chr1 38749382 38749689 -203914664 - AluSx SINE Alu -17 295 1 881 204 0 0 chr1 38749710 38749867 -203914486 + FRAM SINE Alu 1 157 -9 2292 107 3 3 chr1 38750038 38750346 -203914007 - AluSg SINE Alu -2 308 1 587 234 40 88 chr1 38750379 38750605 -203913748 + LTR33 LTR ERVL 1 215 -306 522 219 9 35 chr1 38750620 38750734 -203913619 - MER81 DNA DNA -1 113 3 347 266 73 8 chr1 38750985 38751109 -203913244 - MIR SINE MIR -8 254 123 667 156 0 209 chr1 38751356 38751506 -203912847 - MER5A DNA MER1_type -6 183 94 1684 139 12 0 chr1 38751506 38751750 -203912603 - AluJb SINE Alu -61 251 5 667 156 0 209 chr1 38751750 38751824 -203912529 - MER5A DNA MER1_type -95 94 6 899 134 67 86 chr1 38752075 38752192 -203912161 - L1MB2 LINE L1 -3 6168 6055 2264 114 0 16 chr1 38752192 38752508 -203911845 - AluSq SINE Alu -2 311 1 899 134 67 86 chr1 38752508 38752599 -203911754 - L1MB2 LINE L1 -116 6055 5964 2217 117 0 7 chr1 38752897 38753197 -203911156 + AluSx SINE Alu 1 298 -14 2101 111 3 29 chr1 38753842 38754148 -203910205 + AluSx SINE Alu 1 298 -14 526 86 37 12 chr1 38754267 38754348 -203910005 + AluS SINE Alu 6 88 -225 1366 137 0 0 chr1 38754433 38754623 -203909730 + AluSg/x SINE Alu 99 288 -24 2298 114 0 3 chr1 38754633 38754940 -203909413 + AluSx SINE Alu 3 308 -4 1667 169 32 14 chr1 38754974 38755253 -203909100 + AluJo SINE Alu 1 284 -28 186 219 0 0 chr1 38755270 38755311 -203909042 + L2 LINE L2 3263 3303 -10 2305 108 0 3 chr1 38755311 38755616 -203908737 + AluSg1 SINE Alu 1 304 -5 436 322 98 51 chr1 38755780 38756550 -203907803 - L2 LINE L2 -18 3254 2453 2618 55 7 0 chr1 38756843 38757151 -203907202 - AluY SINE Alu -1 310 1 1153 81 0 0 chr1 38757151 38757287 -203907066 - AluSq/x SINE Alu -177 136 1 684 238 114 141 chr1 38758080 38758211 -203906142 + MLT1H LTR MaLR 1 134 -415 1737 170 3 3 chr1 38758211 38758493 -203905860 + AluJb SINE Alu 1 282 -30 684 238 114 141 chr1 38758493 38758544 -203905809 + MLT1H LTR MaLR 134 185 -364 1077 152 0 0 chr1 38758544 38758709 -203905644 + FRAM SINE Alu 2 166 0 684 238 114 141 chr1 38758709 38758796 -203905557 + MLT1H LTR MaLR 185 273 -276 2434 87 3 0 chr1 38758796 38759094 -203905259 - AluSp SINE Alu -14 299 1 684 238 114 141 chr1 38759094 38759306 -203905047 + MLT1H LTR MaLR 273 470 -79 2385 94 0 0 chr1 38759306 38759603 -203904750 + AluSx SINE Alu 1 297 -15 684 238 114 141 chr1 38759603 38759678 -203904675 + MLT1H LTR MaLR 470 545 -4 594 272 36 49 chr1 38759683 38759907 -203904446 - MIR SINE MIR -22 240 20 1806 148 34 0 chr1 38760263 38760560 -203903793 - AluJb SINE Alu -5 307 1 559 215 30 0 chr1 38760566 38760701 -203903652 - L1MA3 LINE L1 0 6305 6167 778 241 0 0 chr1 38760779 38760953 -203903400 - AluJb SINE Alu 0 310 137 924 118 0 0 chr1 38760993 38761120 -203903233 + FLAM_C SINE Alu 1 127 -6 1592 254 64 39 chr1 38761120 38761535 -203902818 - L1MCc LINE L1 -4360 2762 2359 2198 105 0 0 chr1 38761535 38761841 -203902512 + AluSx SINE Alu 1 306 -6 1592 254 64 39 chr1 38761841 38762821 -203901532 - L1MCc LINE L1 -4763 2359 1129 1317 158 11 34 chr1 38762919 38763163 -203901190 + AluJo SINE Alu 52 291 -21 1998 134 7 0 chr1 38763163 38763468 -203900885 + AluSx SINE Alu 1 307 -5 1317 158 11 34 chr1 38763468 38763489 -203900864 + AluJo SINE Alu 291 311 -1 2064 138 0 0 chr1 38763696 38764007 -203900346 - AluSx SINE Alu -1 311 1 2181 110 3 0 chr1 38764017 38764327 -203900026 - AluSx SINE Alu -1 311 1 446 208 180 118 chr1 38764798 38765043 -203899310 + MIR SINE MIR 2 261 -1 1835 143 3 3 chr1 38765116 38765409 -203898944 + AluJb SINE Alu 1 293 -19 647 274 169 54 chr1 38765878 38766192 -203898161 + HAL1 LINE L1 16 292 -2215 2327 38 0 51 chr1 38766192 38766505 -203897848 + AluY SINE Alu 1 297 -14 647 274 169 54 chr1 38766505 38766804 -203897549 + HAL1 LINE L1 292 700 -1807 439 295 13 0 chr1 38766835 38766991 -203897362 + HAL1 LINE L1 769 926 -1581 1254 231 22 123 chr1 38766999 38767340 -203897013 + L2 LINE L2 2010 2384 -930 1840 103 4 18 chr1 38767340 38767612 -203896741 + AluSx SINE Alu 1 268 -44 1254 231 22 123 chr1 38767612 38767625 -203896728 + L2 LINE L2 2384 2397 -917 180 0 0 0 chr1 38767625 38767645 -203896708 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1254 231 22 123 chr1 38767645 38767731 -203896622 + L2 LINE L2 2397 2398 -916 2172 93 0 7 chr1 38767731 38768021 -203896332 - AluSg SINE Alu -22 288 1 1254 231 22 123 chr1 38768021 38768072 -203896281 + L2 LINE L2 2398 2453 -861 1329 254 31 25 chr1 38768098 38768456 -203895897 - LTR16C LTR ERVL -49 442 83 442 299 169 5 chr1 38768472 38768656 -203895697 + L2 LINE L2 2447 2660 -654 447 88 15 15 chr1 38768660 38768728 -203895625 - MLT1C LTR MaLR -5 462 395 1044 83 0 0 chr1 38768729 38768861 -203895492 + AluSp SINE Alu 1 132 -181 1694 165 3 7 chr1 38768864 38769155 -203895198 + AluSc SINE Alu 1 290 -19 1673 119 0 0 chr1 38769160 38769396 -203894957 + AluSq SINE Alu 1 236 -77 578 285 127 100 chr1 38769540 38770165 -203894188 - L1M4 LINE L1 -949 5197 4590 2099 114 3 0 chr1 38770165 38770472 -203893881 - AluSp SINE Alu -4 309 2 578 285 127 100 chr1 38770472 38770677 -203893676 - L1M4 LINE L1 -1556 4590 4337 2261 96 0 0 chr1 38770677 38770980 -203893373 - AluSx SINE Alu -9 303 1 578 285 127 100 chr1 38770980 38771088 -203893265 - L1M4 LINE L1 -1809 4337 4233 213 39 0 0 chr1 38771089 38771115 -203893238 + (T)n Simple_repeat Simple_repeat 1 26 0 1305 170 9 4 chr1 38771120 38771350 -203893003 - AluJb SINE Alu -81 231 1 195 42 0 0 chr1 38771353 38771377 -203892976 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1091 171 19 24 chr1 38771405 38771610 -203892743 - AluJo SINE Alu -25 287 84 2296 53 0 0 chr1 38771816 38772098 -203892255 - AluY SINE Alu -29 282 1 2129 117 0 16 chr1 38772608 38772925 -203891428 - AluSx SINE Alu 0 312 1 875 188 24 0 chr1 38772927 38773092 -203891261 - AluJo/FRAM SINE Alu -10 302 134 2175 112 0 0 chr1 38773092 38773397 -203890956 - AluSx SINE Alu -7 305 1 2342 87 0 0 chr1 38773399 38773711 -203890642 - AluSx SINE Alu 0 312 1 1857 157 3 3 chr1 38773723 38774017 -203890336 - AluSx SINE Alu -18 294 1 243 358 0 0 chr1 38774127 38774222 -203890131 + CT-rich Low_complexity Low_complexity 3 97 0 2519 221 20 42 chr1 38774313 38774433 -203889920 - MLT1G LTR MaLR 0 590 469 2173 115 0 10 chr1 38774433 38774746 -203889607 + AluSg SINE Alu 1 310 0 2519 221 20 42 chr1 38774746 38774987 -203889366 - MLT1G LTR MaLR -121 469 245 2186 88 3 0 chr1 38774987 38775283 -203889070 - AluSp SINE Alu -15 298 2 2519 221 20 42 chr1 38775283 38775514 -203888839 - MLT1G LTR MaLR -345 245 10 597 271 25 93 chr1 38775526 38775847 -203888506 + L2 LINE L2 3015 3313 0 293 311 71 20 chr1 38775870 38776066 -203888287 - L3 LINE CR1 -7 1570 1365 1169 132 4 6 chr1 38776068 38776327 -203888026 + AluJb SINE Alu 1 311 -1 540 271 40 93 chr1 38776398 38776645 -203887708 - MIR SINE MIR -12 250 17 513 116 95 175 chr1 38776883 38776997 -203887356 + L1MB5 LINE L1 4103 4224 -1922 3548 68 0 2 chr1 38776997 38777453 -203886900 - L1PA8 LINE L1 -4 6168 5714 1850 152 0 7 chr1 38777453 38777750 -203886603 - AluJb SINE Alu -17 295 1 513 116 95 175 chr1 38777750 38777792 -203886561 + L1MB5 LINE L1 4223 4245 -1901 1952 115 0 42 chr1 38777792 38778105 -203886248 + AluSg SINE Alu 1 300 -10 513 116 95 175 chr1 38778105 38778135 -203886218 + L1MB5 LINE L1 4245 4276 -1870 274 105 0 0 chr1 38778135 38778173 -203886180 - tRNA-Glu-GAG tRNA tRNA -37 38 1 4809 159 29 75 chr1 38778182 38778358 -203885995 + L1MB5 LINE L1 4265 4448 -1726 2240 88 0 0 chr1 38778358 38778655 -203885698 - AluY SINE Alu -13 298 2 4809 159 29 75 chr1 38778655 38778833 -203885520 + L1MB5 LINE L1 4448 4633 -1541 2169 94 6 28 chr1 38778833 38779152 -203885201 + AluSx SINE Alu 1 312 0 480 35 0 0 chr1 38779153 38779211 -203885142 + (CA)n Simple_repeat Simple_repeat 1 58 0 4809 159 29 75 chr1 38779211 38779465 -203884888 + L1MB5 LINE L1 4633 4897 -1277 2149 103 7 0 chr1 38779465 38779765 -203884588 - AluSx SINE Alu -9 303 2 4809 159 29 75 chr1 38779765 38779788 -203884565 + L1MB5 LINE L1 4897 4920 -1254 2096 113 33 0 chr1 38779788 38780090 -203884263 - AluSq SINE Alu 0 313 2 4809 159 29 75 chr1 38780090 38780764 -203883589 + L1MB5 LINE L1 4920 5485 -689 1684 155 0 62 chr1 38780764 38781087 -203883266 + AluJb SINE Alu 1 303 -9 4809 159 29 75 chr1 38781087 38781415 -203882938 + L1MB5 LINE L1 5485 5827 -347 857 112 0 8 chr1 38781416 38781541 -203882812 + FLAM_C SINE Alu 3 126 -17 2041 96 4 4 chr1 38782138 38782419 -203881934 - AluSx SINE Alu -11 301 21 222 359 0 22 chr1 38782631 38782723 -203881630 - MIR SINE MIR -152 110 21 203 156 0 0 chr1 38782792 38782824 -203881529 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2066 74 7 11 chr1 38783025 38783346 -203881007 - AluY SINE Alu 0 320 1 311 379 55 17 chr1 38783423 38783658 -203880695 - L2 LINE L2 -2853 461 218 2547 48 0 0 chr1 38783971 38784280 -203880073 - AluY SINE Alu -2 309 1 2324 67 0 0 chr1 38784439 38784736 -203879617 + AluY SINE Alu 1 297 -14 2501 42 0 13 chr1 38784794 38785105 -203879248 + AluY SINE Alu 1 307 -4 368 271 57 8 chr1 38785216 38785338 -203879015 + MIR SINE MIR 100 227 -35 2347 142 5 15 chr1 38785435 38785829 -203878524 + MLT1B LTR MaLR 1 390 0 2186 79 7 3 chr1 38786076 38786380 -203877973 - AluSx SINE Alu -7 305 1 30 97 0 0 chr1 38786896 38786989 -203877364 + GC_rich Low_complexity Low_complexity 1 93 0 234 0 0 0 chr1 38787012 38787038 -203877315 + (CGG)n Simple_repeat Simple_repeat 2 27 0 29 47 0 0 chr1 38787089 38787132 -203877221 + GC_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chr1 38787180 38787205 -203877148 + (CGG)n Simple_repeat Simple_repeat 3 27 0 25 51 0 0 chr1 38787219 38787258 -203877095 + GC_rich Low_complexity Low_complexity 1 39 0 22 70 0 0 chr1 38787296 38787339 -203877014 + GC_rich Low_complexity Low_complexity 1 43 0 519 312 35 6 chr1 38788554 38788727 -203875626 + MIR SINE MIR 75 252 -10 400 279 81 47 chr1 38789398 38789570 -203874783 - MIR SINE MIR -50 212 35 1315 152 76 76 chr1 38789699 38790001 -203874352 + AluSq SINE Alu 9 310 -3 2012 101 44 0 chr1 38790033 38790329 -203874024 + AluSx SINE Alu 1 309 -3 879 233 63 36 chr1 38790388 38790441 -203873912 - MIR SINE MIR -1 261 211 2246 81 10 0 chr1 38790441 38790739 -203873614 - AluSg1 SINE Alu -8 301 1 879 233 63 36 chr1 38790739 38790938 -203873415 - MIR SINE MIR -51 211 2 295 80 26 0 chr1 38790982 38791029 -203873324 + MLT1A2 LTR MaLR 281 344 -46 210 71 0 0 chr1 38791033 38791061 -203873292 + (A)n Simple_repeat Simple_repeat 1 28 0 256 346 63 16 chr1 38791290 38791417 -203872936 + MIR3 SINE MIR 14 146 -62 2047 124 3 0 chr1 38791434 38791733 -203872620 - AluSx SINE Alu -12 300 1 2322 81 0 0 chr1 38791969 38792267 -203872086 + AluY SINE Alu 1 298 -13 1759 132 49 23 chr1 38792316 38792620 -203871733 + AluJb SINE Alu 1 312 0 364 171 27 18 chr1 38792621 38792669 -203871684 + GA-rich Low_complexity Low_complexity 4 50 -65 1968 102 0 4 chr1 38792669 38792944 -203871409 + AluSg SINE Alu 35 308 -2 364 171 27 18 chr1 38792944 38793006 -203871347 + GA-rich Low_complexity Low_complexity 50 115 0 184 0 97 0 chr1 38793195 38793226 -203871127 + T-rich Low_complexity Low_complexity 2 35 0 1997 106 0 3 chr1 38793228 38793510 -203870843 - AluSg SINE Alu -29 281 1 2396 74 0 0 chr1 38793657 38793956 -203870397 - AluY SINE Alu -11 300 2 656 302 116 40 chr1 38794012 38794459 -203869894 + L2 LINE L2 2833 3313 0 257 303 247 0 chr1 38795698 38795860 -203868493 - MIR SINE MIR -14 248 47 834 228 50 0 chr1 38796434 38796614 -203867739 - MER5A DNA MER1_type 0 189 1 208 237 34 17 chr1 38796723 38796782 -203867571 - MIR SINE MIR -1 261 202 508 299 71 11 chr1 38796814 38796998 -203867355 - MIR SINE MIR -59 203 9 1964 132 7 13 chr1 38797002 38797306 -203867047 - AluSx SINE Alu -10 302 1 366 322 164 14 chr1 38797452 38797660 -203866693 - MIR SINE MIR -15 247 9 619 200 291 6 chr1 38798642 38798817 -203865536 - MIR SINE MIR -6 256 32 1935 118 0 30 chr1 38799180 38799500 -203864853 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 38801791 38801812 -203862541 + (T)n Simple_repeat Simple_repeat 1 21 0 372 103 0 0 chr1 38803089 38803147 -203861206 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 225 65 0 0 chr1 38804733 38804764 -203859589 + (CAG)n Simple_repeat Simple_repeat 2 32 0 182 336 109 17 chr1 38804937 38805056 -203859297 - L2 LINE L2 0 3272 3143 373 307 146 49 chr1 38805084 38805556 -203858797 - L2 LINE L2 -706 2608 2091 957 271 115 20 chr1 38807935 38808326 -203856027 - MLT1L LTR MaLR -62 553 126 225 224 158 43 chr1 38808394 38808522 -203855831 - MIR SINE MIR -47 161 21 308 216 145 2 chr1 38808846 38808941 -203855412 - L1M LINE L1 -756 5410 5318 1442 157 28 39 chr1 38808944 38809230 -203855123 - AluJb SINE Alu -18 294 12 664 209 135 35 chr1 38809248 38809478 -203854875 - L1M4 LINE L1 -813 5333 5081 365 236 28 57 chr1 38809667 38809773 -203854580 - L2 LINE L2 -1 3312 3210 469 279 85 0 chr1 38810480 38810609 -203853744 - MIR SINE MIR -46 216 77 21 36 0 0 chr1 38810646 38810674 -203853679 + AT_rich Low_complexity Low_complexity 1 28 0 299 215 21 65 chr1 38810745 38810838 -203853515 - L2 LINE L2 -1 3312 3224 184 342 25 42 chr1 38810982 38811102 -203853251 - L2 LINE L2 -338 2976 2859 216 333 51 0 chr1 38811132 38811210 -203853143 - L2 LINE L2 -528 2786 2705 224 272 212 52 chr1 38813232 38813713 -203850640 - L2 LINE L2 -1242 2072 1515 180 0 0 0 chr1 38813714 38813734 -203850619 + (T)n Simple_repeat Simple_repeat 1 20 0 2003 107 23 7 chr1 38813743 38814042 -203850311 - AluSq SINE Alu -9 304 1 30 69 0 0 chr1 38814055 38814113 -203850240 + AT_rich Low_complexity Low_complexity 1 58 0 815 116 0 103 chr1 38814186 38814341 -203850012 - AluSg/x SINE Alu -17 293 155 1436 118 0 10 chr1 38814341 38814545 -203849808 - AluSq SINE Alu -111 202 1 2171 111 0 0 chr1 38814556 38814853 -203849500 - AluSx SINE Alu -15 297 1 246 191 44 0 chr1 38815076 38815144 -203849209 - L1MC/D LINE L1 -2368 5440 5370 1847 171 0 0 chr1 38815796 38816106 -203848247 - AluJb SINE Alu -2 310 1 1648 163 7 29 chr1 38816110 38816416 -203847937 - AluJo SINE Alu -3 309 11 553 243 201 0 chr1 38816532 38816676 -203847677 + MER5A DNA MER1_type 17 189 0 302 250 0 71 chr1 38817743 38817855 -203846498 - MIR3 SINE MIR -92 116 13 211 294 78 88 chr1 38819036 38819138 -203845215 - L2 LINE L2 -21 3292 3192 505 238 143 18 chr1 38820137 38820246 -203844107 + MER5A DNA MER1_type 1 140 -49 2321 78 3 0 chr1 38820246 38820540 -203843813 - AluSp SINE Alu -18 295 1 505 238 143 18 chr1 38820540 38820598 -203843755 + MER5A DNA MER1_type 140 189 0 1664 112 80 25 chr1 38820613 38820899 -203843454 - AluSx SINE Alu -10 302 1 1473 269 57 22 chr1 38821250 38821704 -203842649 - L2 LINE L2 -6 3307 2838 703 152 87 4 chr1 38821792 38821978 -203842375 + AluJb SINE Alu 12 291 -21 1744 178 27 23 chr1 38821978 38822501 -203841852 - L1MB7 LINE L1 -4 6180 5606 2315 68 3 0 chr1 38822501 38822795 -203841558 - AluY SINE Alu -16 295 1 1744 178 27 23 chr1 38822795 38822889 -203841464 - L1MB7 LINE L1 -578 5606 5514 3719 141 23 0 chr1 38823116 38823714 -203840639 - L1MB3 LINE L1 0 6183 5572 225 222 0 0 chr1 38823714 38823759 -203840594 - L1P5 LINE L1 -604 5550 5506 368 282 16 51 chr1 38824041 38824237 -203840116 - MIR SINE MIR -63 145 5 192 257 115 53 chr1 38824562 38824675 -203839678 - MIR SINE MIR 0 262 143 1842 136 3 3 chr1 38824687 38824974 -203839379 + AluSq SINE Alu 1 287 -26 413 129 0 0 chr1 38825119 38825181 -203839172 + Alu SINE Alu 238 299 -11 30 45 0 0 chr1 38825559 38825603 -203838750 + AT_rich Low_complexity Low_complexity 1 44 0 1993 121 17 0 chr1 38825713 38826011 -203838342 + AluSx SINE Alu 1 303 -9 2240 88 0 23 chr1 38826098 38826405 -203837948 + AluSq SINE Alu 1 300 -13 2078 119 0 0 chr1 38826479 38826772 -203837581 + AluSg SINE Alu 1 293 -17 1586 176 36 0 chr1 38826959 38827260 -203837093 + AluJb SINE Alu 1 312 0 1268 213 20 38 chr1 38827276 38827574 -203836779 + L1ME1 LINE L1 4389 4682 -1464 378 0 0 0 chr1 38827574 38827616 -203836737 + (CA)n Simple_repeat Simple_repeat 2 43 0 1268 213 20 38 chr1 38827616 38827664 -203836689 + L1ME1 LINE L1 4682 4729 -1417 1539 217 104 75 chr1 38827673 38828125 -203836228 + MLT1E LTR MaLR 101 538 -55 2259 90 0 37 chr1 38828125 38828310 -203836043 - AluSx SINE Alu -2 310 120 198 0 0 0 chr1 38828310 38828332 -203836021 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1860 118 0 50 chr1 38828332 38828629 -203835724 - AluSg SINE Alu -28 282 1 2259 90 0 37 chr1 38828629 38828764 -203835589 - AluSx SINE Alu -190 122 1 1539 217 104 75 chr1 38828764 38828812 -203835541 + MLT1E LTR MaLR 538 590 -3 1258 221 54 4 chr1 38828813 38829089 -203835264 + L1ME1 LINE L1 4720 5009 -1137 1323 141 74 50 chr1 38829089 38829387 -203834966 + AluJo SINE Alu 2 306 -6 701 188 7 32 chr1 38829393 38829547 -203834806 + L1ME1 LINE L1 5676 5825 -341 810 266 25 54 chr1 38829596 38829910 -203834443 + L1ME1 LINE L1 5819 6123 -43 2174 77 27 0 chr1 38829910 38830207 -203834146 - AluSq SINE Alu -8 305 1 810 266 25 54 chr1 38830207 38830246 -203834107 + L1ME1 LINE L1 6123 6162 -4 245 348 26 9 chr1 38830488 38830603 -203833750 - L2 LINE L2 -539 2775 2659 45 19 0 0 chr1 38830638 38830690 -203833663 + AT_rich Low_complexity Low_complexity 1 52 0 195 253 172 0 chr1 38830812 38830874 -203833479 - MIR SINE MIR -105 103 42 2442 55 3 0 chr1 38830902 38831212 -203833141 - AluY SINE Alu 0 311 1 698 243 100 36 chr1 38831473 38831889 -203832464 - L1ME2 LINE L1 -207 5957 5401 2151 101 13 0 chr1 38831894 38832192 -203832161 + AluSx SINE Alu 1 302 -10 847 143 0 8 chr1 38832221 38832347 -203832006 + FLAM_C SINE Alu 3 127 -16 239 151 0 57 chr1 38832397 38832450 -203831903 + AluJo/FLAM SINE Alu 120 169 -133 2212 112 0 0 chr1 38832719 38833022 -203831331 - AluSx SINE Alu -9 303 1 1549 183 6 31 chr1 38833098 38833415 -203830938 - AluJo SINE Alu -1 311 3 270 56 0 0 chr1 38833435 38833471 -203830882 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 562 213 9 0 chr1 38833479 38833587 -203830766 - FLAM_A SINE Alu -32 110 2 13119 115 22 26 chr1 38834385 38834705 -203829648 + Tigger1 DNA MER2_type 4 324 -2094 1714 155 0 39 chr1 38834705 38835014 -203829339 - AluJb SINE Alu -15 297 1 13119 115 22 26 chr1 38835014 38835951 -203828402 + Tigger1 DNA MER2_type 324 1263 -1155 2131 114 0 0 chr1 38835951 38836249 -203828104 - AluSg SINE Alu -12 298 1 13119 115 22 26 chr1 38836249 38836792 -203827561 + Tigger1 DNA MER2_type 1263 1799 -619 2397 77 0 0 chr1 38836792 38837103 -203827250 - AluY SINE Alu 0 311 1 13119 115 22 26 chr1 38837103 38837325 -203827028 + Tigger1 DNA MER2_type 1799 2020 -398 1085 168 0 24 chr1 38837325 38837533 -203826820 - AluJo SINE Alu -17 295 93 320 354 78 39 chr1 38837794 38838051 -203826302 + L2 LINE L2 2825 3091 -181 1175 148 141 28 chr1 38838104 38838238 -203826115 + MER33 DNA MER1_type 1 118 -2467 2059 110 3 0 chr1 38838238 38838528 -203825825 - AluSg SINE Alu -19 291 1 1175 148 141 28 chr1 38838528 38838600 -203825753 + MER33 DNA MER1_type 118 180 -2405 2018 117 0 7 chr1 38838600 38838922 -203825431 - AluY SINE Alu 0 311 1 1175 148 141 28 chr1 38838922 38839005 -203825348 + MER33 DNA MER1_type 180 324 0 2218 102 7 0 chr1 38839705 38840010 -203824343 + AluSp SINE Alu 1 307 -6 1939 107 80 0 chr1 38840013 38840302 -203824051 + AluSx SINE Alu 1 312 0 237 258 68 68 chr1 38841338 38841470 -203822883 - L2 LINE L2 -8 3305 3174 677 249 74 19 chr1 38841577 38841875 -203822478 + L1ME1 LINE L1 5725 6052 -114 332 232 0 0 chr1 38841875 38841931 -203822422 - MER2 DNA MER2_type 0 345 290 467 144 39 19 chr1 38841947 38842051 -203822302 + L1MA5A LINE L1 6191 6296 -1 31 44 0 0 chr1 38842103 38842148 -203822205 + AT_rich Low_complexity Low_complexity 1 45 0 1193 105 13 110 chr1 38842234 38842306 -203822047 - MER2 DNA MER2_type -139 206 129 1236 62 152 62 chr1 38842306 38842371 -203821982 - MER30 DNA MER1_type 0 230 172 2203 106 0 6 chr1 38842371 38842682 -203821671 + AluSx SINE Alu 1 309 -3 1236 62 152 62 chr1 38842682 38842827 -203821526 - MER30 DNA MER1_type -58 172 1 1193 105 13 110 chr1 38842827 38842878 -203821475 - MER2 DNA MER2_type -216 129 75 806 171 0 0 chr1 38842878 38843001 -203821352 - FLAM_A SINE Alu -6 127 5 1193 105 13 110 chr1 38843001 38843104 -203821249 - MER2 DNA MER2_type -270 75 1 374 298 81 40 chr1 38843211 38843335 -203821018 + L2 LINE L2 3143 3271 -1 232 200 15 15 chr1 38843335 38843400 -203820953 + (CA)n Simple_repeat Simple_repeat 1 65 0 198 0 0 0 chr1 38844150 38844172 -203820181 + (TTAGG)n Simple_repeat Simple_repeat 2 23 0 301 268 99 63 chr1 38844294 38844436 -203819917 - L2 LINE L2 -1 3271 3125 219 204 0 0 chr1 38846969 38847013 -203817340 + (CCG)n Simple_repeat Simple_repeat 3 46 0 457 327 206 27 chr1 38847667 38848403 -203815950 + L2 LINE L2 1802 2669 -645 334 153 51 0 chr1 38848585 38848644 -203815709 - MER5A DNA MER1_type -1 188 127 2237 90 0 3 chr1 38848646 38848946 -203815407 + AluSx SINE Alu 1 299 -13 1759 132 49 23 chr1 38848995 38849299 -203815054 + AluJb SINE Alu 1 312 0 364 171 27 18 chr1 38849300 38849348 -203815005 + GA-rich Low_complexity Low_complexity 4 50 -65 1968 102 0 4 chr1 38849348 38849623 -203814730 + AluSg SINE Alu 35 308 -2 364 171 27 18 chr1 38849623 38849685 -203814668 + GA-rich Low_complexity Low_complexity 50 115 0 857 56 56 24 chr1 38849830 38849955 -203814398 - L1PA5 LINE L1 0 6154 6026 1280 92 0 0 chr1 38850059 38850223 -203814130 - AluSq SINE Alu -149 164 1 2868 166 39 48 chr1 38850224 38850895 -203813458 + L1MB5 LINE L1 4848 5497 -677 1684 155 0 62 chr1 38850895 38851218 -203813135 + AluJb SINE Alu 1 303 -9 2868 166 39 48 chr1 38851218 38851546 -203812807 + L1MB5 LINE L1 5497 5827 -347 857 112 0 8 chr1 38851547 38851672 -203812681 + FLAM_C SINE Alu 3 126 -17 2041 96 4 4 chr1 38852269 38852550 -203811803 - AluSx SINE Alu -11 301 21 222 359 0 22 chr1 38852762 38852854 -203811499 - MIR SINE MIR -152 110 21 203 156 0 0 chr1 38852923 38852955 -203811398 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2066 74 7 11 chr1 38853156 38853477 -203810876 - AluY SINE Alu 0 320 1 311 379 55 17 chr1 38853554 38853789 -203810564 - L2 LINE L2 -2853 461 218 2461 62 0 0 chr1 38854102 38854411 -203809942 - AluY SINE Alu -2 309 1 723 290 57 18 chr1 38854424 38854703 -203809650 - L2 LINE L2 -1124 2190 1901 228 200 25 38 chr1 38854870 38854950 -203809403 + L1MEd LINE L1 54 132 -5987 335 222 14 0 chr1 38855242 38855314 -203809039 + L1ME3A LINE L1 5486 5558 -563 1305 187 211 54 chr1 38855318 38855406 -203808947 + L1ME3A LINE L1 5628 5701 -469 2123 107 0 3 chr1 38855406 38855704 -203808649 - AluSx SINE Alu -15 297 1 1305 187 211 54 chr1 38855704 38856080 -203808273 + L1ME3A LINE L1 5701 6165 -5 1653 171 20 3 chr1 38857091 38857389 -203806964 + AluJo SINE Alu 1 303 -9 1318 183 95 0 chr1 38858406 38858680 -203805673 + AluJo SINE Alu 1 300 -12 305 322 35 0 chr1 38859068 38859155 -203805198 - L2 LINE L2 -14 3258 3169 432 130 13 13 chr1 38859332 38859409 -203804944 - L1PA5 LINE L1 -176 5978 5902 193 333 17 0 chr1 38859534 38859594 -203804759 - L2 LINE L2 -217 3055 2995 2150 107 0 0 chr1 38859728 38860028 -203804325 - AluSx SINE Alu -12 300 1 363 236 54 27 chr1 38860318 38860466 -203803887 + MER103 DNA DNA 1 152 -14 1312 154 27 32 chr1 38860515 38860735 -203803618 - MER20 DNA MER1_type 0 219 1 2347 103 0 0 chr1 38861369 38861679 -203802674 + AluSg SINE Alu 1 310 0 186 305 51 42 chr1 38861998 38862116 -203802237 + L2 LINE L2 3187 3305 -8 830 255 21 25 chr1 38862737 38862980 -203801373 - L2 LINE L2 0 3313 3072 231 309 0 0 chr1 38863001 38863085 -203801268 + L1MC4 LINE L1 6613 6696 -1346 2418 106 0 0 chr1 38863192 38863503 -203800850 + AluSx SINE Alu 1 311 -1 390 42 0 0 chr1 38863503 38863551 -203800802 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 2394 221 65 169 chr1 38863554 38864159 -203800194 - L2 LINE L2 -414 2900 2234 756 208 0 8 chr1 38864159 38864289 -203800064 + AluJo/FLAM SINE Alu 4 132 -180 2071 128 0 20 chr1 38864289 38864594 -203799759 + AluSg SINE Alu 1 299 -11 422 111 0 32 chr1 38864596 38864659 -203799694 + Alu SINE Alu 238 298 -14 2394 221 65 169 chr1 38864659 38865195 -203799158 - L2 LINE L2 -1080 2234 1730 2162 131 3 0 chr1 38865195 38865500 -203798853 - AluSx SINE Alu -6 306 1 2394 221 65 169 chr1 38865500 38865643 -203798710 - L2 LINE L2 -1584 1730 1574 382 236 49 57 chr1 38865726 38865849 -203798504 - MIR SINE MIR -62 200 79 * 397 298 13 53 chr1 38865844 38865995 -203798358 + MIR SINE MIR 62 206 -56 1868 122 45 14 chr1 38866737 38867024 -203797329 - AluSx SINE Alu -16 296 1 2262 102 7 0 chr1 38867103 38867398 -203796955 - AluSp SINE Alu -16 297 1 837 97 14 41 chr1 38867898 38868043 -203796310 + L1MA4 LINE L1 6155 6295 -5 1963 119 3 66 chr1 38868097 38868264 -203796089 - AluSx SINE Alu -12 300 161 2128 113 0 16 chr1 38868264 38868575 -203795778 - AluSx SINE Alu -6 306 1 1963 119 3 66 chr1 38868575 38868726 -203795627 - AluSx SINE Alu -151 161 2 22 35 0 0 chr1 38868970 38868999 -203795354 + AT_rich Low_complexity Low_complexity 1 29 0 1873 204 74 11 chr1 38869312 38869358 -203794995 - L1MB4 LINE L1 -1 6179 6137 1633 176 14 30 chr1 38869358 38869653 -203794700 + AluJo SINE Alu 1 290 -22 1873 204 74 11 chr1 38869653 38870092 -203794261 - L1MB4 LINE L1 -43 6137 5667 816 232 27 18 chr1 38870966 38871186 -203793167 + MIR SINE MIR 31 252 -10 240 232 313 20 chr1 38871278 38871377 -203792976 + L2 LINE L2 3181 3308 -5 2214 108 0 13 chr1 38871764 38872071 -203792282 + AluSg1 SINE Alu 1 303 -6 2177 123 3 3 chr1 38872082 38872384 -203791969 + AluSx SINE Alu 1 302 -10 279 93 0 0 chr1 38872639 38872682 -203791671 - AluJo SINE Alu 0 302 260 1250 171 34 0 chr1 38872682 38872887 -203791466 - AluJo SINE Alu -100 212 1 2292 103 7 0 chr1 38873154 38873455 -203790898 + AluSq SINE Alu 1 303 -10 279 93 0 0 chr1 38873712 38873755 -203790598 - AluJo SINE Alu 0 302 260 1236 176 34 0 chr1 38873755 38873960 -203790393 - AluJo SINE Alu -100 212 1 1041 157 0 0 chr1 38874127 38874286 -203790067 - AluJo SINE Alu -69 243 85 2276 101 0 3 chr1 38874438 38874736 -203789617 - AluSq SINE Alu -16 297 1 255 250 0 0 chr1 38875007 38875051 -203789302 - MER5A DNA MER1_type -3 186 143 2251 70 26 42 chr1 38875469 38875782 -203788571 + AluSx SINE Alu 1 308 -4 1389 188 67 7 chr1 38875795 38876077 -203788276 + AluJo SINE Alu 3 301 -11 255 250 0 0 chr1 38876489 38876533 -203787820 - MER5A DNA MER1_type -3 186 143 2286 67 25 41 chr1 38876951 38877265 -203787088 + AluSx SINE Alu 1 309 -3 1667 153 64 7 chr1 38877278 38877559 -203786794 + AluJo SINE Alu 3 299 -13 30 45 0 0 chr1 38877937 38877981 -203786372 + AT_rich Low_complexity Low_complexity 1 44 0 2096 121 17 0 chr1 38878091 38878389 -203785964 + AluSx SINE Alu 1 303 -9 2205 100 36 0 chr1 38878476 38878777 -203785576 + AluSx SINE Alu 1 312 0 231 146 0 0 chr1 38879785 38879826 -203784527 + (TTC)n Simple_repeat Simple_repeat 2 42 0 2308 92 3 3 chr1 38880395 38880700 -203783653 + AluSc SINE Alu 1 305 -4 951 198 12 95 chr1 38881618 38881975 -203782378 - MLT1I LTR MaLR 0 409 14 1706 176 0 3 chr1 38882108 38882392 -203781961 - AluJo SINE Alu -29 283 1 1510 116 29 142 chr1 38882402 38882748 -203781605 - AluYb8 SINE Alu -6 312 6 2153 139 10 0 chr1 38882752 38883054 -203781299 - AluSx SINE Alu -7 305 1 320 352 16 16 chr1 38883321 38883449 -203780904 + L2 LINE L2 3182 3309 -4 419 250 128 33 chr1 38885334 38885514 -203778839 - MIR SINE MIR -49 213 17 2502 75 0 3 chr1 38885673 38885980 -203778373 - AluY SINE Alu -5 306 1 610 133 89 0 chr1 38886251 38886341 -203778012 + FLAM_A SINE Alu 4 101 -41 2180 103 7 0 chr1 38886356 38886647 -203777706 + AluSg SINE Alu 1 293 -17 2322 78 20 0 chr1 38886781 38887075 -203777278 - AluY SINE Alu -11 300 1 194 314 38 29 chr1 38887444 38887549 -203776804 - L2 LINE L2 -1654 1660 1555 289 365 55 7 chr1 38887760 38887905 -203776448 - L3 LINE CR1 -481 1096 945 1937 111 24 14 chr1 38888152 38888441 -203775912 - AluSx SINE Alu -20 292 1 234 91 0 0 chr1 38888515 38888548 -203775805 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 22 0 0 0 chr1 38888892 38888914 -203775439 + AT_rich Low_complexity Low_complexity 1 22 0 2723 207 52 90 chr1 38889103 38889522 -203774831 - L1ME3 LINE L1 -2 6160 5727 2214 70 0 4 chr1 38889522 38889793 -203774560 - AluY SINE Alu -41 270 1 2723 207 52 90 chr1 38889793 38890162 -203774191 - L1ME3 LINE L1 -435 5727 5346 2155 134 0 3 chr1 38890162 38890468 -203773885 - AluSx SINE Alu -7 305 1 1867 167 0 3 chr1 38890470 38890764 -203773589 - AluJo SINE Alu -19 293 1 2723 207 52 90 chr1 38890764 38890965 -203773388 - L1ME3 LINE L1 -817 5345 5138 1757 181 20 10 chr1 38890965 38891131 -203773222 - AluJo SINE Alu -10 302 139 183 42 0 0 chr1 38891131 38891155 -203773198 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2107 119 0 11 chr1 38891155 38891440 -203772913 - AluSx SINE Alu -30 282 1 1757 181 20 10 chr1 38891440 38891571 -203772782 - AluJo SINE Alu -172 140 1 2723 207 52 90 chr1 38891571 38891604 -203772749 - L1ME3 LINE L1 -1023 5139 5155 1616 161 4 4 chr1 38892054 38892327 -203772026 - AluJb SINE Alu -1 311 39 874 266 31 4 chr1 38892465 38892694 -203771659 + MIR SINE MIR 1 235 -27 190 237 129 21 chr1 38892745 38892838 -203771515 - L2 LINE L2 -21 3292 3190 924 163 0 0 chr1 38892932 38893067 -203771286 + AluJb SINE Alu 164 298 -14 2089 98 0 18 chr1 38893198 38893369 -203770984 - AluSx SINE Alu 0 304 139 2223 102 7 13 chr1 38893369 38893672 -203770681 - AluSx SINE Alu -11 301 1 2089 98 0 18 chr1 38893672 38893809 -203770544 - AluSx SINE Alu -165 139 1 1572 169 13 73 chr1 38893811 38894125 -203770228 - AluJo SINE Alu -17 295 1 267 103 0 0 chr1 38895008 38895047 -203769306 + (TA)n Simple_repeat Simple_repeat 2 40 0 810 169 15 42 chr1 38895359 38895603 -203768750 + MER1B DNA MER1_type 1 339 0 285 274 0 0 chr1 38895656 38895729 -203768624 + MIR SINE MIR 88 160 -102 2127 115 14 0 chr1 38895729 38896025 -203768328 + AluSx SINE Alu 1 300 -12 248 226 0 19 chr1 38896028 38896081 -203768272 + Tigger4(Zombi) DNA MER2_type 2679 2730 -1 2186 122 0 3 chr1 38896270 38896574 -203767779 - AluSq SINE Alu -10 303 1 260 237 0 26 chr1 38896741 38896817 -203767536 + L1PB4 LINE L1 6083 6156 0 21 0 0 0 chr1 38896836 38896857 -203767496 + AT_rich Low_complexity Low_complexity 1 21 0 1844 152 0 26 chr1 38897250 38897552 -203766801 - AluJb SINE Alu -18 294 1 221 334 98 64 chr1 38897584 38898404 -203765949 + L2 LINE L2 1218 2009 -1305 1817 155 3 39 chr1 38898404 38898713 -203765640 - AluSq SINE Alu -15 298 1 221 334 98 64 chr1 38898713 38898962 -203765391 + L2 LINE L2 2009 2248 -1066 967 255 163 17 chr1 38898962 38899319 -203765034 - MLT1I LTR MaLR 0 409 1 221 334 98 64 chr1 38899319 38899493 -203764860 + L2 LINE L2 2248 2504 -810 2349 73 3 0 chr1 38899522 38899809 -203764544 + AluY SINE Alu 1 288 -23 198 0 0 0 chr1 38899810 38899832 -203764521 + (TA)n Simple_repeat Simple_repeat 2 23 0 707 210 0 0 chr1 38899832 38899951 -203764402 - FLAM_C SINE Alu -14 119 1 264 216 0 0 chr1 38899953 38900004 -203764349 - L1ME1 LINE L1 -65 6101 6051 1292 98 13 94 chr1 38900004 38900103 -203764250 + MER2 DNA MER2_type 1 106 -239 868 173 0 0 chr1 38900103 38900230 -203764123 + FLAM_A SINE Alu 1 127 -6 1292 98 13 94 chr1 38900230 38900281 -203764072 + MER2 DNA MER2_type 106 130 -215 1315 62 152 62 chr1 38900281 38900426 -203763927 + MER30 DNA MER1_type 1 172 -58 2328 103 0 6 chr1 38900426 38900737 -203763616 - AluSx SINE Alu -3 309 1 1315 62 152 62 chr1 38900737 38900802 -203763551 + MER30 DNA MER1_type 172 230 0 1292 98 13 94 chr1 38900802 38900874 -203763479 + MER2 DNA MER2_type 130 206 -139 261 218 67 107 chr1 38900905 38901057 -203763296 + MER2 DNA MER2_type 130 272 -73 507 144 39 19 chr1 38901057 38901161 -203763192 - L1MA5A LINE L1 -1 6296 6191 261 218 67 107 chr1 38901161 38901233 -203763120 + MER2 DNA MER2_type 272 345 0 833 264 125 3 chr1 38901236 38901524 -203762829 - L1MD3 LINE L1 -1941 6054 5732 228 244 76 69 chr1 38901638 38901769 -203762584 + L2 LINE L2 3174 3305 -8 299 285 90 49 chr1 38902421 38902565 -203761788 - MIR3 SINE MIR -58 150 1 21 0 0 0 chr1 38902569 38902590 -203761763 + AT_rich Low_complexity Low_complexity 1 21 0 1765 174 0 13 chr1 38902602 38902906 -203761447 + AluJo SINE Alu 2 301 -11 2113 140 0 9 chr1 38903465 38903780 -203760573 + AluSx SINE Alu 1 312 0 527 341 171 16 chr1 38904757 38905144 -203759209 - L2 LINE L2 -1 3271 2825 181 340 60 10 chr1 38905188 38905288 -203759065 - L2 LINE L2 -786 2528 2424 536 292 112 26 chr1 38905535 38905840 -203758513 - L2 LINE L2 0 3313 2983 2543 46 7 3 chr1 38905936 38906240 -203758113 + AluY SINE Alu 1 305 -6 209 301 27 27 chr1 38906618 38906691 -203757662 - L2 LINE L2 -196 3076 3004 2416 56 7 10 chr1 38906805 38907111 -203757242 + AluY SINE Alu 1 305 -6 272 84 42 28 chr1 38907253 38907324 -203757029 + T-rich Low_complexity Low_complexity 4 75 0 2119 85 46 4 chr1 38910385 38910666 -203753687 + AluSq SINE Alu 1 293 -20 251 296 28 0 chr1 38912107 38912178 -203752175 - L2 LINE L2 0 3272 3200 185 179 0 0 chr1 38912249 38912277 -203752076 - L2 LINE L2 -23 3249 3222 2146 83 22 0 chr1 38912278 38912600 -203751753 - AluY SINE Alu 0 328 1 1991 150 0 13 chr1 38912602 38912915 -203751438 - AluJb SINE Alu -3 309 1 2210 102 0 3 chr1 38913220 38913505 -203750848 - AluSx SINE Alu -28 284 1 1207 113 17 6 chr1 38913810 38913987 -203750366 - FRAM SINE Alu -2 174 1 306 100 0 0 chr1 38914030 38914070 -203750283 - tRNA-Thr-ACT tRNA tRNA -37 40 1 715 169 8 32 chr1 38914082 38914206 -203750147 - FLAM_A SINE Alu -11 122 2 558 328 103 32 chr1 38914534 38914912 -203749441 - L2 LINE L2 -582 2732 2328 1273 85 6 0 chr1 38964995 38965171 -203699182 + AluSg/x SINE Alu 122 298 -14 1163 132 11 0 chr1 38965223 38965405 -203698948 - AluSg/x SINE Alu -6 306 123 2066 120 3 0 chr1 38965410 38965709 -203698644 - AluSq SINE Alu -13 300 1 192 257 115 53 chr1 38965721 38965834 -203698519 + MIR SINE MIR 143 262 0 395 284 16 45 chr1 38966159 38966354 -203697999 + MIR SINE MIR 5 192 -63 225 222 0 0 chr1 38966636 38966681 -203697672 + L1P5 LINE L1 5506 5550 -604 3701 142 23 0 chr1 38966681 38967279 -203697074 + L1MB3 LINE L1 5572 6183 0 1744 176 27 23 chr1 38967506 38967600 -203696753 + L1MB7 LINE L1 5514 5606 -578 2287 71 3 0 chr1 38967600 38967894 -203696459 + AluY SINE Alu 1 295 -16 1744 176 27 23 chr1 38967894 38968417 -203695936 + L1MB7 LINE L1 5606 6180 -4 703 145 137 0 chr1 38968417 38968534 -203695819 - AluJo/FRAM SINE Alu -21 291 159 446 149 0 0 chr1 38968536 38968603 -203695750 - AluJ/FLAM SINE Alu -234 78 12 1487 273 55 22 chr1 38968691 38969146 -203695207 + L2 LINE L2 2838 3307 -6 1669 112 80 25 chr1 38969497 38969783 -203694570 + AluSx SINE Alu 1 302 -10 505 238 143 18 chr1 38969798 38969856 -203694497 - MER5A DNA MER1_type 0 189 140 2321 78 3 0 chr1 38969856 38970150 -203694203 + AluSp SINE Alu 1 295 -18 505 238 143 18 chr1 38970150 38970259 -203694094 - MER5A DNA MER1_type -49 140 1 211 294 78 88 chr1 38971258 38971360 -203692993 + L2 LINE L2 3192 3292 -21 302 250 0 71 chr1 38972541 38972653 -203691700 + MIR3 SINE MIR 13 116 -92 553 243 201 0 chr1 38973720 38973864 -203690489 - MER5A DNA MER1_type 0 189 17 1648 163 7 29 chr1 38973980 38974286 -203690067 + AluJo SINE Alu 11 309 -3 1874 168 0 0 chr1 38974290 38974600 -203689753 + AluJb SINE Alu 1 310 -2 981 283 128 16 chr1 38975252 38975751 -203688602 + L1MC4a LINE L1 5370 5924 -1884 2214 104 0 0 chr1 38975832 38976129 -203688224 + AluSx SINE Alu 1 297 -15 1436 118 0 10 chr1 38976140 38976344 -203688009 + AluSq SINE Alu 1 202 -111 815 116 0 103 chr1 38976344 38976499 -203687854 + AluSg/x SINE Alu 157 295 -17 30 69 0 0 chr1 38976572 38976630 -203687723 + AT_rich Low_complexity Low_complexity 1 58 0 2003 107 23 7 chr1 38976643 38976942 -203687411 + AluSq SINE Alu 1 304 -9 180 0 0 0 chr1 38976951 38976971 -203687382 + (A)n Simple_repeat Simple_repeat 1 20 0 255 280 133 70 chr1 38976972 38977497 -203686856 + L2 LINE L2 1515 2072 -1242 374 298 81 40 chr1 38979237 38979361 -203684992 + L2 LINE L2 3143 3271 -1 232 200 15 15 chr1 38979361 38979426 -203684927 + (CA)n Simple_repeat Simple_repeat 1 65 0 198 0 0 0 chr1 38980176 38980198 -203684155 + (TTAGG)n Simple_repeat Simple_repeat 2 23 0 301 268 99 63 chr1 38980320 38980462 -203683891 - L2 LINE L2 -1 3271 3125 183 139 0 0 chr1 38982864 38982900 -203681453 + (CCG)n Simple_repeat Simple_repeat 3 38 0 457 327 206 27 chr1 38983554 38984290 -203680063 + L2 LINE L2 1802 2669 -645 882 164 41 77 chr1 38984472 38984533 -203679820 - MER5A DNA MER1_type -1 188 126 2265 99 0 3 chr1 38984533 38984845 -203679508 + AluSq SINE Alu 1 311 -2 882 164 41 77 chr1 38984845 38984978 -203679375 - MER5A DNA MER1_type -63 126 1 1116 185 9 50 chr1 38984992 38985195 -203679158 + MIR SINE MIR 12 207 -55 2180 119 0 0 chr1 38985195 38985506 -203678847 + AluSx SINE Alu 1 311 -1 1116 185 9 50 chr1 38985506 38985524 -203678829 + MIR SINE MIR 207 224 -38 1218 183 66 4 chr1 38985585 38985741 -203678612 - AluJo SINE Alu -20 292 114 192 77 0 0 chr1 38985741 38985767 -203678586 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1218 183 66 4 chr1 38985767 38985851 -203678502 - AluJo SINE Alu -198 114 37 206 280 54 65 chr1 38985944 38986037 -203678316 + L2 LINE L2 3180 3271 -42 1921 108 80 0 chr1 38986392 38986679 -203677674 - AluSx SINE Alu -2 310 1 2218 102 7 0 chr1 38986682 38986987 -203677366 - AluSp SINE Alu -6 307 1 1175 148 141 28 chr1 38987687 38987770 -203676583 - MER33 DNA MER1_type -2261 324 252 2018 117 0 7 chr1 38987770 38988092 -203676261 + AluY SINE Alu 1 311 0 1175 148 141 28 chr1 38988092 38988164 -203676189 - MER33 DNA MER1_type -2333 252 190 2059 110 3 0 chr1 38988164 38988454 -203675899 + AluSg SINE Alu 1 291 -19 1175 148 141 28 chr1 38988454 38988588 -203675765 - MER33 DNA MER1_type -2395 190 1 320 354 78 39 chr1 38988641 38988898 -203675455 - L2 LINE L2 -181 3091 2825 1085 168 0 24 chr1 38989159 38989367 -203674986 + AluJo SINE Alu 93 295 -17 13119 115 22 26 chr1 38989367 38989589 -203674764 - Tigger1 DNA MER2_type -398 2020 1799 2397 77 0 0 chr1 38989589 38989900 -203674453 + AluY SINE Alu 1 311 0 13119 115 22 26 chr1 38989900 38990443 -203673910 - Tigger1 DNA MER2_type -619 1799 1255 2131 114 0 0 chr1 38990443 38990741 -203673612 + AluSg SINE Alu 1 298 -12 13119 115 22 26 chr1 38990741 38991678 -203672675 - Tigger1 DNA MER2_type -1163 1255 324 1714 155 0 39 chr1 38991678 38991987 -203672366 + AluJb SINE Alu 1 297 -15 13119 115 22 26 chr1 38991987 38992307 -203672046 - Tigger1 DNA MER2_type -2094 324 4 562 213 9 0 chr1 38993104 38993212 -203671141 + FLAM_A SINE Alu 2 110 -32 291 28 0 0 chr1 38993220 38993256 -203671097 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1549 183 6 31 chr1 38993276 38993593 -203670760 + AluJo SINE Alu 3 311 -1 2289 99 0 0 chr1 38993669 38993971 -203670382 + AluSx SINE Alu 1 302 -10 2401 64 0 3 chr1 38994067 38994365 -203669988 - AluY SINE Alu -12 299 3 847 143 0 8 chr1 38994436 38994562 -203669791 - FLAM_C SINE Alu -16 127 3 2151 101 13 0 chr1 38994591 38994889 -203669464 - AluSx SINE Alu -10 302 1 698 243 100 36 chr1 38994894 38995310 -203669043 + L1ME2 LINE L1 5401 5957 -207 2442 55 3 0 chr1 38995571 38995881 -203668472 + AluY SINE Alu 1 311 0 195 253 172 0 chr1 38995909 38995971 -203668382 + MIR SINE MIR 42 112 -105 45 19 0 0 chr1 38996093 38996145 -203668208 + AT_rich Low_complexity Low_complexity 1 52 0 245 348 26 9 chr1 38996180 38996295 -203668058 + L2 LINE L2 2659 2775 -539 795 268 25 54 chr1 38996537 38996576 -203667777 - L1ME1 LINE L1 -4 6162 6123 2264 67 27 0 chr1 38996576 38996875 -203667478 + AluSq SINE Alu 1 307 -6 795 268 25 54 chr1 38996875 38997189 -203667164 - L1ME1 LINE L1 -43 6123 5819 701 188 7 32 chr1 38997238 38997392 -203666961 - L1ME1 LINE L1 -341 5825 5676 1460 129 66 56 chr1 38997398 38997701 -203666652 - AluJo SINE Alu -5 307 2 1258 221 54 4 chr1 38997701 38997977 -203666376 - L1ME1 LINE L1 -1137 5009 4720 1539 217 104 75 chr1 38997978 38998026 -203666327 - MLT1E LTR MaLR -3 590 545 2267 90 0 37 chr1 38998026 38998161 -203666192 + AluSx SINE Alu 1 139 -173 1861 118 0 50 chr1 38998161 38998480 -203665873 + AluSg SINE Alu 1 304 0 2267 90 0 37 chr1 38998480 38998666 -203665687 + AluSx SINE Alu 139 311 -1 1539 217 104 75 chr1 38998666 38999118 -203665235 - MLT1E LTR MaLR -48 545 101 1268 213 20 38 chr1 38999127 38999175 -203665178 - L1ME1 LINE L1 -1417 4729 4682 378 0 0 0 chr1 38999175 38999217 -203665136 + (TG)n Simple_repeat Simple_repeat 2 43 0 1268 213 20 38 chr1 38999217 38999515 -203664838 - L1ME1 LINE L1 -1464 4682 4389 1643 166 36 0 chr1 38999539 38999840 -203664513 - AluJb SINE Alu 0 312 1 2078 119 0 0 chr1 39000027 39000320 -203664033 - AluSg SINE Alu -17 293 1 2081 102 7 23 chr1 39000394 39000697 -203663656 - AluSq SINE Alu -13 300 3 2086 134 10 0 chr1 39000698 39001003 -203663350 - AluSx SINE Alu -4 308 1 329 352 16 16 chr1 39001270 39001398 -203662955 + L2 LINE L2 3182 3309 -4 256 295 77 0 chr1 39001878 39001956 -203662397 - L2 LINE L2 -5 3267 3184 411 294 113 13 chr1 39001962 39002201 -203662152 + L1MEc LINE L1 1373 1889 -4327 1671 163 0 25 chr1 39002206 39002526 -203661827 + AluJo SINE Alu 1 312 0 2561 191 31 28 chr1 39002529 39003101 -203661252 + L1MB4 LINE L1 5325 5898 -282 1262 167 9 9 chr1 39003195 39003417 -203660936 - AluJb SINE Alu -90 222 1 953 188 0 12 chr1 39003417 39003607 -203660746 - FAM SINE Alu 0 175 2 492 91 246 18 chr1 39003617 39003727 -203660626 + L1MA10 LINE L1 6199 6333 -1 452 211 179 47 chr1 39003714 39003904 -203660449 + L1ME3A LINE L1 5956 6170 0 * 485 326 168 10 chr1 39003943 39004329 -203660024 + L2 LINE L2 1548 1994 -1320 676 161 69 0 chr1 39004349 39004479 -203659874 - MIR SINE MIR -46 216 78 567 335 170 26 chr1 39004485 39004574 -203659779 + L2 LINE L2 1972 2047 -1267 183 42 0 0 chr1 39004574 39004598 -203659755 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2062 103 0 0 chr1 39004600 39004881 -203659472 - AluSg SINE Alu -29 281 1 567 335 170 26 chr1 39004881 39005453 -203658900 + L2 LINE L2 2047 2732 -582 669 169 8 32 chr1 39005781 39005905 -203658448 + FLAM_A SINE Alu 2 122 -11 309 100 0 0 chr1 39005917 39005957 -203658396 + tRNA-Thr-ACT tRNA tRNA 1 40 -37 1144 112 17 6 chr1 39006000 39006178 -203658175 + FRAM SINE Alu 1 175 -1 566 168 80 24 chr1 39006395 39006520 -203657833 - AluSp SINE Alu -180 133 2 425 257 128 34 chr1 39007911 39008090 -203656263 - MIR SINE MIR -49 213 18 2385 75 0 3 chr1 39008250 39008557 -203655796 - AluY SINE Alu -5 306 1 580 133 89 0 chr1 39008829 39008919 -203655434 + FLAM_A SINE Alu 4 101 -41 2140 103 3 0 chr1 39008934 39009226 -203655127 + AluSg SINE Alu 1 293 -17 2242 78 20 0 chr1 39009360 39009656 -203654697 - AluY SINE Alu -9 302 1 195 314 38 29 chr1 39010025 39010130 -203654223 - L2 LINE L2 -1654 1660 1555 214 347 103 60 chr1 39010246 39010733 -203653620 - L3 LINE CR1 -356 1221 711 1845 106 28 14 chr1 39010733 39011017 -203653336 - AluSq SINE Alu -20 293 6 1675 171 17 3 chr1 39011778 39012077 -203652276 + AluJo SINE Alu 1 303 -9 1416 183 95 0 chr1 39013094 39013368 -203650985 + AluJo SINE Alu 1 300 -12 185 361 15 30 chr1 39013368 39013501 -203650852 + L2 LINE L2 1776 1906 -1408 304 322 35 0 chr1 39013756 39013843 -203650510 - L2 LINE L2 -14 3258 3169 2305 103 3 0 chr1 39014068 39014369 -203649984 - AluSx SINE Alu -10 302 1 224 211 0 0 chr1 39014658 39014696 -203649657 + L2 LINE L2 3209 3246 -26 190 319 53 60 chr1 39015600 39015834 -203648519 + L3 LINE CR1 1170 1451 -126 278 333 11 0 chr1 39016229 39016319 -203648034 + L3 LINE CR1 1294 1384 -193 792 187 8 0 chr1 39016341 39016475 -203647878 - AluSg/x SINE Alu -38 274 140 1361 187 211 54 chr1 39016814 39017190 -203647163 - L1ME3A LINE L1 -5 6165 5701 2232 107 0 3 chr1 39017190 39017488 -203646865 + AluSx SINE Alu 1 297 -15 1361 187 211 54 chr1 39017488 39017576 -203646777 - L1ME3A LINE L1 -469 5701 5628 344 222 14 0 chr1 39017580 39017652 -203646701 - L1ME3A LINE L1 -563 5558 5486 238 200 25 38 chr1 39017944 39018024 -203646329 - L1MEd LINE L1 -5987 132 54 1009 302 40 34 chr1 39018191 39018483 -203645870 + L2 LINE L2 1901 2199 -1115 2619 49 0 7 chr1 39018483 39018791 -203645562 + AluY SINE Alu 1 306 -5 1009 302 40 34 chr1 39018791 39018942 -203645411 + L2 LINE L2 2199 2347 -967 184 0 97 0 chr1 39018964 39018995 -203645358 + T-rich Low_complexity Low_complexity 2 35 0 2236 89 0 3 chr1 39018997 39019279 -203645074 - AluSg SINE Alu -29 281 1 2518 70 0 0 chr1 39019426 39019725 -203644628 - AluY SINE Alu -11 300 2 661 311 48 64 chr1 39019781 39020221 -203644132 + L2 LINE L2 2833 3265 -7 241 335 214 0 chr1 39021467 39021649 -203642704 - MIR SINE MIR -14 248 28 901 228 50 0 chr1 39022203 39022383 -203641970 - MER5A DNA MER1_type 0 189 1 199 167 0 0 chr1 39022515 39022551 -203641802 - MIR SINE MIR -25 237 202 496 299 71 11 chr1 39022583 39022767 -203641586 - MIR SINE MIR -59 203 9 2061 132 7 13 chr1 39022771 39023075 -203641278 - AluSx SINE Alu -10 302 1 221 238 30 109 chr1 39023128 39023229 -203641124 + L2 LINE L2 2716 2808 -506 * 373 323 157 14 chr1 39023206 39023423 -203640930 - MIR SINE MIR -6 256 9 598 200 291 6 chr1 39024405 39024580 -203639773 - MIR SINE MIR -6 256 32 2023 121 0 30 chr1 39024943 39025263 -203639090 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 39027691 39027712 -203636641 + (T)n Simple_repeat Simple_repeat 1 21 0 372 103 0 0 chr1 39028988 39029046 -203635307 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 225 65 0 0 chr1 39030633 39030664 -203633689 + (CAG)n Simple_repeat Simple_repeat 2 32 0 318 311 146 49 chr1 39030984 39031456 -203632897 - L2 LINE L2 -706 2608 2091 952 284 110 15 chr1 39033686 39034077 -203630276 - MLT1L LTR MaLR -62 553 126 217 224 158 43 chr1 39034145 39034273 -203630080 - MIR SINE MIR -47 161 21 748 197 98 102 chr1 39034597 39034695 -203629658 - L1M LINE L1 -743 5403 5306 1530 140 39 49 chr1 39034695 39034981 -203629372 - AluJb SINE Alu -18 294 12 748 197 98 102 chr1 39034981 39035229 -203629124 - L1M LINE L1 -840 5306 5081 355 236 28 57 chr1 39035418 39035524 -203628829 - L2 LINE L2 -1 3312 3210 446 279 85 0 chr1 39036231 39036360 -203627993 - MIR SINE MIR -46 216 77 21 36 0 0 chr1 39036397 39036425 -203627928 + AT_rich Low_complexity Low_complexity 1 28 0 285 215 21 65 chr1 39036496 39036589 -203627764 - L2 LINE L2 -1 3312 3224 182 342 25 42 chr1 39036733 39036853 -203627500 - L2 LINE L2 -338 2976 2859 209 333 51 0 chr1 39036883 39036961 -203627392 - L2 LINE L2 -528 2786 2705 24 53 0 0 chr1 39037496 39037534 -203626819 + GC_rich Low_complexity Low_complexity 1 38 0 189 219 0 0 chr1 39038228 39038269 -203626084 + MIR SINE MIR 156 196 -66 23 33 0 0 chr1 39038962 39038992 -203625361 + AT_rich Low_complexity Low_complexity 1 30 0 2029 145 7 0 chr1 39039770 39040080 -203624273 + AluJo SINE Alu 1 312 0 2027 88 0 18 chr1 39041049 39041322 -203623031 - AluSx SINE Alu -5 307 40 430 140 0 0 chr1 39042820 39042903 -203621450 - AluSq SINE Alu 0 308 226 1000 109 0 0 chr1 39042903 39043031 -203621322 - AluSq SINE Alu -185 128 1 926 130 0 0 chr1 39043154 39043277 -203621076 - FLAM_C SINE Alu -16 127 5 1866 109 64 4 chr1 39043544 39043811 -203620542 + AluSq SINE Alu 16 298 -15 1793 163 10 10 chr1 39043820 39044115 -203620238 + AluSg SINE Alu 1 295 -15 2283 105 0 10 chr1 39044389 39044695 -203619658 - AluSx SINE Alu -9 303 1 300 229 90 62 chr1 39044705 39044849 -203619504 - L1ME4a LINE L1 0 6121 5974 299 264 83 45 chr1 39044889 39045154 -203619199 - L1MC4a LINE L1 -1913 5895 5621 761 161 75 40 chr1 39045865 39046039 -203618314 + L1MC1 LINE L1 6154 6333 0 257 338 0 0 chr1 39046050 39046124 -203618229 + MIR3 SINE MIR 89 162 -46 1360 217 124 52 chr1 39046154 39046483 -203617870 - L1MC5 LINE L1 -30 7931 7627 2400 85 0 0 chr1 39046483 39046778 -203617575 - AluSx SINE Alu -17 295 1 1360 217 124 52 chr1 39046778 39047038 -203617315 - L1MC5 LINE L1 -334 7627 7300 2511 245 126 22 chr1 39047039 39047855 -203616498 + L2 LINE L2 1836 2736 -578 456 207 69 35 chr1 39047856 39047972 -203616381 + L1M4 LINE L1 4706 4825 -1321 486 201 194 22 chr1 39047986 39048120 -203616233 + MIR SINE MIR 58 214 -48 939 153 0 7 chr1 39048122 39048272 -203616081 + AluJb SINE Alu 1 149 -163 241 235 0 0 chr1 39048279 39048330 -203616023 + MIR SINE MIR 204 254 -8 225 296 82 10 chr1 39048375 39048473 -203615880 - MIR SINE MIR -97 165 61 943 255 33 24 chr1 39048672 39049005 -203615348 - L1M4 LINE L1 -2364 3782 3447 2630 156 101 63 chr1 39049125 39049416 -203614937 - L1MB2 LINE L1 0 6171 5892 1956 119 0 18 chr1 39049416 39049702 -203614651 - AluSx SINE Alu -14 298 18 2630 156 101 63 chr1 39049702 39049713 -203614640 - L1MB2 LINE L1 -279 5892 5883 2011 147 7 0 chr1 39049713 39050012 -203614341 - AluSq SINE Alu -12 301 1 1895 130 27 23 chr1 39050013 39050312 -203614041 - AluJb SINE Alu -12 300 1 2630 156 101 63 chr1 39050312 39050620 -203613733 - L1MB2 LINE L1 -287 5884 5535 584 196 143 0 chr1 39050648 39050760 -203613593 - FLAM_A SINE Alu -5 128 1 442 78 0 65 chr1 39050946 39051023 -203613330 - AluSx SINE Alu 0 309 238 1333 130 0 16 chr1 39051023 39051215 -203613138 - AluSx SINE Alu -123 189 1 1603 173 20 30 chr1 39051223 39051523 -203612830 - AluSx SINE Alu -15 297 1 538 232 0 63 chr1 39051622 39051764 -203612589 - FLAM_C SINE Alu 0 133 1 424 291 76 38 chr1 39053257 39053415 -203610938 - MIR3 SINE MIR -7 201 38 243 0 0 0 chr1 39053511 39053538 -203610815 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 232 213 75 64 chr1 39053690 39053784 -203610569 + L2 LINE L2 2203 2297 -1017 1025 152 6 0 chr1 39054341 39054505 -203609848 + FAM SINE Alu 1 48 -1 2067 95 0 51 chr1 39054628 39054943 -203609410 - AluSg SINE Alu -11 299 1 21 0 0 0 chr1 39055331 39055352 -203609001 + AT_rich Low_complexity Low_complexity 1 21 0 2282 109 3 0 chr1 39055352 39055654 -203608699 - AluSp SINE Alu -10 303 1 1459 161 58 34 chr1 39056031 39056322 -203608031 - AluJo SINE Alu -14 298 1 2351 95 0 0 chr1 39056352 39056646 -203607707 + AluSc SINE Alu 1 294 -15 2131 120 20 0 chr1 39057362 39057662 -203606691 - AluSx SINE Alu -6 306 1 1864 146 34 3 chr1 39057804 39058098 -203606255 - AluJb SINE Alu -7 305 3 4714 133 32 76 chr1 39058276 39058548 -203605805 - L1MB7 LINE L1 -10 6174 5892 2196 121 20 0 chr1 39058548 39058854 -203605499 - AluSx SINE Alu 0 312 1 4714 133 32 76 chr1 39058854 39058961 -203605392 - L1MB7 LINE L1 -292 5892 5782 1919 137 77 51 chr1 39058961 39059297 -203605056 + MER7A DNA MER2_type 4 346 0 4714 133 32 76 chr1 39059297 39059559 -203604794 - L1MB7 LINE L1 -402 5782 5510 872 179 0 15 chr1 39059559 39059693 -203604660 + FLAM_C SINE Alu 2 133 0 4714 133 32 76 chr1 39059693 39059939 -203604414 - L1MB7 LINE L1 -674 5510 5336 2051 107 53 4 chr1 39059939 39060220 -203604133 - AluSx SINE Alu -14 298 4 4714 133 32 76 chr1 39060220 39060458 -203603895 - L1MB7 LINE L1 -848 5336 5089 238 267 0 0 chr1 39060819 39060879 -203603474 - L1ME LINE L1 -294 5827 5768 248 301 68 0 chr1 39061032 39061105 -203603248 - L2 LINE L2 -9 3304 3227 489 157 101 0 chr1 39061256 39061345 -203603008 - MER7A DNA MER2_type -250 96 1 255 366 99 4 chr1 39061462 39061694 -203602659 - L2 LINE L2 -459 2855 2602 652 269 58 46 chr1 39061938 39062002 -203602351 - Charlie7 DNA MER1_type -2289 323 261 2025 145 0 10 chr1 39062002 39062306 -203602047 - AluJb SINE Alu -11 301 1 652 269 58 46 chr1 39062306 39062501 -203601852 - Charlie7 DNA MER1_type -2351 261 61 288 326 144 50 chr1 39062625 39063041 -203601312 - L2 LINE L2 -824 2490 2115 1983 128 9 35 chr1 39063041 39063360 -203600993 - AluSx SINE Alu -1 311 1 288 326 144 50 chr1 39063360 39063479 -203600874 - L2 LINE L2 -1199 2115 2009 2095 122 7 20 chr1 39063479 39063782 -203600571 + AluSx SINE Alu 1 299 -13 288 326 144 50 chr1 39063782 39063806 -203600547 - L2 LINE L2 -1305 2009 1877 2291 105 0 0 chr1 39063855 39064150 -203600203 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr1 39064162 39064190 -203600163 + AT_rich Low_complexity Low_complexity 1 28 0 1589 191 3 26 chr1 39064190 39064494 -203599859 + AluJo SINE Alu 1 297 -15 2236 115 0 0 chr1 39064512 39064808 -203599545 + AluSg SINE Alu 1 296 -14 1813 132 30 0 chr1 39064819 39065084 -203599269 + AluJb SINE Alu 30 302 -10 21 36 0 0 chr1 39065597 39065625 -203598728 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr1 39066283 39066330 -203598023 + AT_rich Low_complexity Low_complexity 1 47 0 311 250 120 20 chr1 39066378 39066478 -203597875 - MIR SINE MIR -63 145 36 873 184 0 0 chr1 39066764 39066900 -203597453 + FRAM SINE Alu 20 155 -21 852 152 0 0 chr1 39066937 39067062 -203597291 + FLAM_C SINE Alu 1 125 -18 2316 82 0 25 chr1 39067344 39067662 -203596691 - AluY SINE Alu -1 310 1 21 0 0 0 chr1 39067671 39067692 -203596661 + AT_rich Low_complexity Low_complexity 1 21 0 775 317 116 53 chr1 39067732 39068480 -203595873 - L3 LINE CR1 -80 1497 703 203 250 0 0 chr1 39068498 39068538 -203595815 - L2 LINE L2 -11 3302 3263 2563 64 0 0 chr1 39068673 39068984 -203595369 + AluY SINE Alu 1 311 0 272 167 0 0 chr1 39068990 39069044 -203595309 + L1 LINE L1 4773 4826 -1320 340 277 116 53 chr1 39069312 39069621 -203594732 + L1ME LINE L1 5387 5714 -456 26 0 0 0 chr1 39069761 39069787 -203594566 + AT_rich Low_complexity Low_complexity 1 26 0 187 284 27 14 chr1 39070234 39070308 -203594045 - L2 LINE L2 -844 2470 2396 231 275 14 0 chr1 39070496 39070565 -203593788 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 5961 92 28 1 chr1 39070565 39071410 -203592943 - L1PA13 LINE L1 -20 6143 5276 2385 94 0 0 chr1 39071621 39071930 -203592423 + AluSg SINE Alu 1 309 -1 2380 95 3 0 chr1 39072232 39072536 -203591817 - AluSp SINE Alu -8 305 1 2436 212 65 43 chr1 39073609 39073811 -203590542 - L1MC4 LINE L1 0 8042 7846 1759 170 7 7 chr1 39073811 39074126 -203590227 - AluSx SINE Alu 0 315 1 2436 212 65 43 chr1 39074126 39074672 -203589681 - L1MC4 LINE L1 -196 7846 7276 * 4297 163 69 28 chr1 39074669 39075558 -203588795 - L1MB3 LINE L1 0 6183 5259 566 172 57 0 chr1 39075651 39075773 -203588580 - L1MB3 LINE L1 -874 5272 5144 2133 213 145 126 chr1 39075773 39076049 -203588304 - L1MC4a LINE L1 -601 7207 6938 1652 148 18 115 chr1 39076049 39076433 -203587920 - MER7A DNA MER2_type 0 346 2 2133 213 145 126 chr1 39076433 39076642 -203587711 - L1MC4a LINE L1 -870 6938 6734 183 80 0 0 chr1 39076642 39076667 -203587686 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2133 213 145 126 chr1 39076667 39077137 -203587216 - L1MC4a LINE L1 -1074 6734 6274 195 42 0 0 chr1 39077137 39077161 -203587192 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1652 184 11 0 chr1 39077161 39077438 -203586915 - AluJo SINE Alu -32 280 1 2133 213 145 126 chr1 39077438 39077568 -203586785 - L1MC4a LINE L1 -1534 6274 6148 2101 123 23 0 chr1 39077568 39077870 -203586483 - AluSx SINE Alu -3 309 1 2133 213 145 126 chr1 39077870 39078286 -203586067 - L1MC4a LINE L1 -1660 6148 5674 1814 156 0 58 chr1 39079100 39079408 -203584945 - AluJb SINE Alu -22 290 1 27 29 0 0 chr1 39079532 39079566 -203584787 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr1 39079982 39080004 -203584349 + AT_rich Low_complexity Low_complexity 1 22 0 638 259 72 55 chr1 39080353 39080940 -203583413 - L1MC5 LINE L1 -54 7907 7311 235 236 132 19 chr1 39081107 39081213 -203583140 - L1MC4 LINE L1 -821 7221 7104 527 189 27 9 chr1 39081240 39081351 -203583002 - L1MC4 LINE L1 -1126 6916 6804 * 886 269 158 42 chr1 39081336 39081931 -203582422 - L1MC4 LINE L1 -748 5398 5197 183 42 0 0 chr1 39081953 39081977 -203582376 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 314 289 219 23 chr1 39082164 39082349 -203582004 - L1MC4 LINE L1 -1536 4610 4463 2095 115 48 0 chr1 39082349 39082644 -203581709 - AluSp SINE Alu -2 311 3 314 289 219 23 chr1 39082644 39083376 -203580977 - L1MC4 LINE L1 -1683 4463 3544 183 42 0 0 chr1 39083403 39083427 -203580926 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1209 104 31 0 chr1 39083471 39083664 -203580689 + L1MA3 LINE L1 6102 6300 -5 21 0 0 0 chr1 39083664 39083685 -203580668 + AT_rich Low_complexity Low_complexity 1 21 0 2168 133 0 0 chr1 39083803 39084104 -203580249 - AluJb SINE Alu -11 301 1 2133 87 21 7 chr1 39084616 39084903 -203579450 - AluSq SINE Alu -22 291 1 269 279 103 70 chr1 39085213 39085494 -203578859 - L1MC4 LINE L1 -3105 3041 2771 2481 51 3 0 chr1 39085494 39085787 -203578566 + AluY SINE Alu 1 294 -17 269 279 103 70 chr1 39085787 39086204 -203578149 - L1MC4 LINE L1 -3375 2771 2320 642 255 162 20 chr1 39086839 39087184 -203577169 - HAL1b LINE L1 -607 741 348 516 184 20 0 chr1 39087968 39088066 -203576287 + L1MC4 LINE L1 7943 8042 0 964 126 0 7 chr1 39088557 39088692 -203575661 + AluJo SINE Alu 1 134 -178 660 199 126 11 chr1 39088693 39088954 -203575399 + L1ME3A LINE L1 2874 3164 -2982 457 335 22 16 chr1 39088971 39089156 -203575197 - L2 LINE L2 -554 2760 2575 1549 198 55 45 chr1 39089317 39089696 -203574657 - MLT2C1 LTR ERVL -2 395 13 1442 194 19 66 chr1 39089703 39090023 -203574330 + AluJo SINE Alu 3 307 -5 239 357 107 34 chr1 39090251 39090579 -203573774 - L2 LINE L2 -958 2356 2005 1041 144 22 11 chr1 39090585 39090765 -203573588 + AluJo SINE Alu 119 300 -12 394 278 36 159 chr1 39090858 39091160 -203573193 + L2 LINE L2 2989 3253 -19 224 282 0 28 chr1 39091176 39091247 -203573106 - L2 LINE L2 -190 3082 3014 345 257 56 83 chr1 39091381 39091422 -203572931 + L1ME3A LINE L1 4569 4610 -1536 1547 182 41 3 chr1 39091422 39091713 -203572640 + AluJb SINE Alu 1 302 -10 345 257 56 83 chr1 39091713 39091815 -203572538 + L1ME3A LINE L1 4610 4708 -1438 485 242 85 122 chr1 39092270 39092817 -203571536 + L1ME3A LINE L1 5315 5874 -296 1929 154 3 0 chr1 39092830 39093123 -203571230 + AluSx SINE Alu 13 306 -6 2224 131 0 0 chr1 39093125 39093430 -203570923 + AluSx SINE Alu 1 305 -7 2230 121 0 0 chr1 39093457 39093755 -203570598 + AluSx SINE Alu 1 298 -14 1269 104 0 0 chr1 39093755 39093919 -203570434 + AluSg/x SINE Alu 134 297 -15 2445 83 0 0 chr1 39094199 39094500 -203569853 + AluSg SINE Alu 1 301 -9 4130 138 42 8 chr1 39094563 39095292 -203569061 - L1MA9 LINE L1 -5 6307 5554 804 177 29 23 chr1 39095738 39095913 -203568440 + MER104 DNA MER2_type 1 176 -4 1934 161 3 3 chr1 39096003 39096301 -203568052 + AluJb SINE Alu 1 298 -14 199 279 8 108 chr1 39096350 39096479 -203567874 - MIR SINE MIR -15 247 132 2427 55 14 0 chr1 39096638 39096927 -203567426 + AluY SINE Alu 1 293 -18 22 80 0 0 chr1 39097109 39097159 -203567194 + AT_rich Low_complexity Low_complexity 1 50 0 1993 98 39 7 chr1 39097432 39097717 -203566636 + AluSx SINE Alu 1 294 -18 243 325 0 33 chr1 39097761 39097881 -203566472 - HAL1 LINE L1 -615 1892 1777 325 223 209 14 chr1 39097905 39097947 -203566406 - HAL1 LINE L1 -806 1701 1668 235 49 49 0 chr1 39097947 39097988 -203566365 + (TA)n Simple_repeat Simple_repeat 1 43 0 325 223 209 14 chr1 39097988 39098084 -203566269 - HAL1 LINE L1 -839 1668 1536 254 105 53 18 chr1 39098082 39098139 -203566214 - L1MB7 LINE L1 0 6184 6126 * 1937 274 78 20 chr1 39098134 39098836 -203565517 - HAL1 LINE L1 -1451 1056 314 325 256 97 97 chr1 39098847 39099023 -203565330 - HAL1 LINE L1 -2328 179 4 246 301 84 0 chr1 39099034 39099117 -203565236 + L2 LINE L2 3169 3258 -14 1793 235 141 15 chr1 39099141 39099622 -203564731 - MLT1F LTR MaLR 0 542 1 1453 228 105 12 chr1 39099622 39100127 -203564226 + L1ME LINE L1 3062 3613 -2533 2261 106 7 0 chr1 39100150 39100453 -203563900 - AluSg SINE Alu -3 307 3 848 146 0 161 chr1 39100454 39100659 -203563694 - FRAM SINE Alu -4 172 1 2336 243 122 25 chr1 39100702 39101363 -203562990 + L1ME LINE L1 3880 4476 -1670 1751 120 4 12 chr1 39101363 39101621 -203562732 + AluSx SINE Alu 36 291 -21 266 0 29 0 chr1 39101621 39101655 -203562698 + (TA)n Simple_repeat Simple_repeat 1 35 0 2336 243 122 25 chr1 39101655 39102094 -203562259 + L1ME LINE L1 4475 5087 -1059 1980 142 7 3 chr1 39102094 39102390 -203561963 - AluSx SINE Alu -15 297 1 963 198 105 73 chr1 39102398 39102468 -203561885 + L1ME LINE L1 5132 5198 -966 1487 184 59 7 chr1 39102468 39102756 -203561597 + AluJo SINE Alu 1 303 -9 963 198 105 73 chr1 39102756 39102900 -203561453 + L1ME LINE L1 5198 5336 -828 2174 118 7 0 chr1 39102900 39103197 -203561156 + AluSq SINE Alu 1 299 -14 963 198 105 73 chr1 39103197 39103407 -203560946 + L1ME LINE L1 5336 5575 -589 1934 148 0 3 chr1 39103407 39103716 -203560637 + AluSx SINE Alu 1 308 0 963 198 105 73 chr1 39103716 39103747 -203560606 + L1ME LINE L1 5575 5604 -560 1845 170 156 3 chr1 39103748 39104107 -203560246 + MER47B DNA MER2_type 5 418 0 1944 94 0 0 chr1 39104119 39104373 -203559980 - AluSx SINE Alu -23 289 36 243 259 78 0 chr1 39104397 39104513 -203559840 + L1M4 LINE L1 4414 4538 -1608 411 299 40 88 chr1 39104626 39105051 -203559302 - L1ME LINE L1 -351 5819 5409 265 204 171 0 chr1 39105053 39105141 -203559212 - L1ME LINE L1 -1002 5357 5255 358 299 78 13 chr1 39105223 39105377 -203558976 - L1ME LINE L1 -1022 5124 4961 2018 88 53 18 chr1 39105482 39105766 -203558587 + AluSx SINE Alu 1 294 -18 776 267 138 54 chr1 39105769 39106562 -203557791 - L1ME LINE L1 -1459 4687 3829 26 0 0 0 chr1 39107176 39107202 -203557151 + AT_rich Low_complexity Low_complexity 1 26 0 2232 105 3 16 chr1 39107365 39107680 -203556673 + AluSx SINE Alu 1 311 -1 383 216 137 46 chr1 39107690 39107877 -203556476 + L1PA8A LINE L1 5639 5839 -303 1909 144 10 10 chr1 39108438 39108729 -203555624 - AluSx SINE Alu -21 291 1 2398 85 0 7 chr1 39108736 39109043 -203555310 - AluSx SINE Alu -7 305 1 514 32 0 0 chr1 39109220 39109283 -203555070 - AluY SINE Alu -235 75 13 1614 81 0 0 chr1 39109284 39109481 -203554872 + AluSg/x SINE Alu 85 281 -31 309 51 0 0 chr1 39109484 39109523 -203554830 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 254 213 83 102 chr1 39109581 39109689 -203554664 + L2 LINE L2 3206 3311 -2 2159 122 3 0 chr1 39109826 39110121 -203554232 + AluSp SINE Alu 3 298 -15 303 28 0 0 chr1 39110121 39110157 -203554196 + (TA)n Simple_repeat Simple_repeat 2 37 0 873 148 0 15 chr1 39110284 39110419 -203553934 + FLAM_C SINE Alu 1 133 0 22 35 0 0 chr1 39111007 39111036 -203553317 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 39111489 39111509 -203552844 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 987 179 41 37 chr1 39113369 39113587 -203550766 - MER20 DNA MER1_type 0 219 1 809 183 43 38 chr1 39113781 39113826 -203550527 - MER3 DNA MER1_type -22 187 144 2039 128 17 0 chr1 39113826 39114115 -203550238 + AluSq SINE Alu 1 294 -19 809 183 43 38 chr1 39114115 39114255 -203550098 - MER3 DNA MER1_type -65 144 1 338 186 193 41 chr1 39115620 39115765 -203548588 - L1ME4a LINE L1 -86 6035 5869 2502 78 0 3 chr1 39116341 39116650 -203547703 - AluY SINE Alu -3 308 1 1955 158 7 0 chr1 39116733 39117037 -203547316 + AluSx SINE Alu 1 306 -6 2311 78 14 0 chr1 39117037 39117330 -203547023 + AluSp SINE Alu 1 297 -16 302 182 15 0 chr1 39117330 39117396 -203546957 + GA-rich Low_complexity Low_complexity 1 67 0 266 267 0 89 chr1 39117988 39118078 -203546275 + MIR SINE MIR 3 84 -178 458 289 80 52 chr1 39118115 39118364 -203545989 + MIR SINE MIR 6 261 -1 1765 150 45 3 chr1 39118477 39118764 -203545589 + AluJo SINE Alu 14 312 0 32 17 7 0 chr1 39118949 39119028 -203545325 + AT_rich Low_complexity Low_complexity 1 39 0 735 192 0 17 chr1 39119209 39119329 -203545024 + FLAM_A SINE Alu 11 128 -14 1980 157 0 7 chr1 39119351 39119650 -203544703 - AluJo SINE Alu -15 297 1 831 154 15 15 chr1 39119650 39119786 -203544567 - AluJo SINE Alu -176 136 1 2381 88 3 0 chr1 39120575 39120869 -203543484 - AluSx SINE Alu -17 295 1 2464 86 0 0 chr1 39120901 39121202 -203543151 + AluY SINE Alu 1 301 -10 4524 182 68 9 chr1 39121290 39122104 -203542249 - MER21B LTR ERV1 -1 862 1 323 345 0 0 chr1 39122150 39122263 -203542090 + MIR SINE MIR 42 154 -108 2489 149 5 34 chr1 39122268 39122594 -203541759 - MER57A LTR ERV1 0 403 90 2309 100 0 0 chr1 39122594 39122893 -203541460 - AluSx SINE Alu -13 299 1 2489 149 5 34 chr1 39122893 39122981 -203541372 - MER57A LTR ERV1 -313 90 1 643 128 21 0 chr1 39123029 39123123 -203541230 - MER57A-int LTR ERV1 -54 7483 7388 247 163 41 0 chr1 39123123 39123172 -203541181 - LTR54B LTR ERV1 -214 284 234 439 155 0 0 chr1 39123172 39123243 -203541110 - MER57A-int LTR ERV1 -202 7335 7265 767 103 26 0 chr1 39123243 39123359 -203540994 - LTR54B LTR ERV1 -377 121 3 4211 128 19 57 chr1 39123359 39124030 -203540323 - MER57A-int LTR ERV1 -391 7146 6505 1855 161 0 7 chr1 39124030 39124328 -203540025 + AluJb SINE Alu 1 296 -16 4211 128 19 57 chr1 39124328 39124405 -203539948 - MER57A-int LTR ERV1 -1032 6505 6427 1723 113 32 4 chr1 39124435 39124683 -203539670 - AluSc SINE Alu -54 255 1 3261 193 5 27 chr1 39124683 39124844 -203539509 - MER57A-int LTR ERV1 -1092 6445 6282 2154 91 47 10 chr1 39124844 39125142 -203539211 - AluSc SINE Alu 0 309 1 3261 193 5 27 chr1 39125142 39125616 -203538737 - MER57A-int LTR ERV1 -1255 6282 5824 3924 162 26 33 chr1 39125944 39126172 -203538181 - MER57A-int LTR ERV1 -1716 5821 5593 2033 119 0 11 chr1 39126172 39126483 -203537870 - AluSx SINE Alu 0 308 1 3924 162 26 33 chr1 39126483 39127013 -203537340 - MER57A-int LTR ERV1 -1944 5593 5067 1946 123 3 11 chr1 39127018 39127329 -203537024 - AluSx SINE Alu 0 309 1 2154 110 0 4 chr1 39127338 39127643 -203536710 - AluSg SINE Alu 0 304 1 370 82 0 0 chr1 39127643 39127692 -203536661 + MADE1 DNA Mariner 32 80 0 2850 141 45 50 chr1 39127724 39128340 -203536013 - MER57A-int LTR ERV1 -1830 4501 3889 3570 175 20 97 chr1 39128343 39128474 -203535879 - MER57A-int LTR ERV1 -6756 781 642 1785 165 7 10 chr1 39128474 39128765 -203535588 - AluJb SINE Alu -9 303 14 3570 175 20 97 chr1 39128765 39129061 -203535292 - MER57A-int LTR ERV1 -6895 642 325 2244 96 36 0 chr1 39129061 39129363 -203534990 + AluSq SINE Alu 1 313 0 3570 175 20 97 chr1 39129363 39129780 -203534573 - MER57A-int LTR ERV1 -7212 325 1 2556 159 18 0 chr1 39129780 39130176 -203534177 - MER57A LTR ERV1 0 403 1 1959 170 7 0 chr1 39130548 39130848 -203533505 - AluJb SINE Alu -10 302 1 807 114 0 0 chr1 39131094 39131199 -203533154 - AluSg/x SINE Alu -11 301 197 2064 143 0 10 chr1 39132167 39132468 -203531885 + AluSx SINE Alu 1 298 -14 1912 148 3 3 chr1 39132529 39132819 -203531534 - AluSx SINE Alu -22 290 1 26 30 0 0 chr1 39132826 39132859 -203531494 + AT_rich Low_complexity Low_complexity 1 33 0 315 315 21 28 chr1 39132915 39133058 -203531295 + MIR SINE MIR 57 198 -64 692 225 134 22 chr1 39133058 39133289 -203531064 - MIR SINE MIR 0 262 6 21 0 0 0 chr1 39133792 39133813 -203530540 + AT_rich Low_complexity Low_complexity 1 21 0 2354 74 0 7 chr1 39133907 39134205 -203530148 + AluY SINE Alu 1 296 -15 529 278 13 20 chr1 39134292 39134443 -203529910 + MIR SINE MIR 2 151 -111 1089 197 0 122 chr1 39134495 39134658 -203529695 - AluSp SINE Alu -55 258 145 5548 23 3 0 chr1 39134658 39135262 -203529091 - L1PA3 LINE L1 0 6155 5550 1089 197 0 122 chr1 39135262 39135392 -203528961 - AluSp SINE Alu -168 145 1 452 110 0 0 chr1 39135394 39135467 -203528886 - L1MCa LINE L1 -4108 2318 2246 514 153 24 65 chr1 39135488 39135612 -203528741 + MIR SINE MIR 143 261 -1 2501 74 0 6 chr1 39135795 39136107 -203528246 - AluY SINE Alu -1 310 1 2340 95 0 0 chr1 39136108 39136404 -203527949 - AluSx SINE Alu -16 296 1 1839 182 3 13 chr1 39136631 39136944 -203527409 + AluJb SINE Alu 1 310 -2 273 267 86 29 chr1 39136974 39137079 -203527274 + L1ME LINE L1 5456 5566 -555 633 108 21 0 chr1 39137096 39137189 -203527164 - AluJ/FLAM SINE Alu -216 96 2 1934 167 113 34 chr1 39137195 39137582 -203526771 - L1MCa LINE L1 -4112 2314 1872 917 174 23 12 chr1 39137582 39137754 -203526599 - FAM SINE Alu -1 174 1 1934 167 113 34 chr1 39137754 39137898 -203526455 - L1MCa LINE L1 -4554 1872 1741 3943 145 39 72 chr1 39137989 39138803 -203525550 - L1MB3 LINE L1 -72 6111 5323 1615 162 42 35 chr1 39138803 39139087 -203525266 - AluJo SINE Alu -22 290 5 1991 117 0 86 chr1 39139120 39139254 -203525099 + AluSx SINE Alu 2 146 -166 2264 97 0 31 chr1 39139254 39139574 -203524779 + AluSq SINE Alu 1 310 -3 1991 117 0 86 chr1 39139574 39139764 -203524589 + AluSx SINE Alu 146 298 -14 1825 146 13 23 chr1 39139769 39140070 -203524283 + AluJb SINE Alu 1 298 -14 518 72 0 60 chr1 39140965 39141048 -203523305 - MER51A LTR ERV1 -71 563 486 1288 152 0 10 chr1 39141622 39141819 -203522534 + AluJb SINE Alu 95 289 -23 208 268 18 0 chr1 39141906 39141962 -203522391 + MIR3 SINE MIR 144 200 -8 2601 56 0 3 chr1 39142162 39142465 -203521888 + AluY SINE Alu 1 302 -9 236 284 102 15 chr1 39142735 39142932 -203521421 - L1M4 LINE L1 -3371 2775 2562 2040 109 14 7 chr1 39143095 39143407 -203520946 - AluSq SINE Alu 0 314 1 2095 118 3 7 chr1 39143649 39143946 -203520407 + AluSx SINE Alu 1 296 -16 2433 81 0 3 chr1 39144657 39144966 -203519387 - AluY SINE Alu -3 308 1 2441 86 0 0 chr1 39145625 39145928 -203518425 + AluSc SINE Alu 1 303 -6 777 198 0 0 chr1 39145941 39146057 -203518296 - FLAM_A SINE Alu -17 116 1 215 0 67 0 chr1 39146154 39146184 -203518169 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2373 102 0 0 chr1 39147202 39147506 -203516847 + AluSx SINE Alu 1 304 -8 2584 65 0 0 chr1 39147642 39147952 -203516401 - AluY SINE Alu -1 310 1 727 229 43 16 chr1 39148129 39148317 -203516036 + MIR SINE MIR 65 257 -5 21 0 0 0 chr1 39148343 39148364 -203515989 + AT_rich Low_complexity Low_complexity 1 21 0 189 250 15 44 chr1 39148423 39148491 -203515862 - MIR SINE MIR -38 224 159 2004 150 13 0 chr1 39148496 39148796 -203515557 - AluSx SINE Alu -8 304 1 359 302 180 6 chr1 39149257 39149429 -203514924 + MIR SINE MIR 52 253 -9 24 0 0 0 chr1 39149563 39149587 -203514766 + AT_rich Low_complexity Low_complexity 1 24 0 582 155 0 0 chr1 39150305 39150389 -203513964 - FLAM_A SINE Alu -39 103 20 1879 159 7 17 chr1 39150474 39150775 -203513578 + AluJb SINE Alu 1 298 -14 2066 106 3 60 chr1 39150800 39151153 -203513200 - AluSx SINE Alu 0 312 1 3630 169 19 28 chr1 39151555 39151641 -203512712 + L1M2a LINE L1 4 89 -7079 2160 123 7 0 chr1 39151641 39151933 -203512420 - AluSx SINE Alu -18 294 1 1932 131 0 81 chr1 39151933 39152254 -203512099 - AluSq SINE Alu -18 295 1 3630 169 19 28 chr1 39152254 39152799 -203511554 + L1M2a LINE L1 87 630 -6538 1319 96 0 17 chr1 39152821 39152999 -203511354 + AluSx SINE Alu 1 175 -137 300 89 0 54 chr1 39152999 39153055 -203511298 + FAM SINE Alu 127 179 0 922 213 53 31 chr1 39153074 39153299 -203511054 + L1M2a LINE L1 684 913 -6255 4062 160 47 117 chr1 39153325 39153374 -203510979 + L1M2a LINE L1 2121 2172 -4996 2159 104 7 0 chr1 39153374 39153662 -203510691 + AluSp SINE Alu 1 290 -23 4062 160 47 117 chr1 39153662 39154009 -203510344 + L1M2a LINE L1 2172 2541 -4627 1952 142 7 7 chr1 39154009 39154305 -203510048 + AluJb SINE Alu 1 296 -16 4062 160 47 117 chr1 39154305 39154603 -203509750 + L1M2a LINE L1 2541 2858 -4310 621 156 0 0 chr1 39154603 39154693 -203509660 + FRAM SINE Alu 55 144 -32 264 30 0 0 chr1 39154693 39154726 -203509627 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 4062 160 47 117 chr1 39154726 39155124 -203509229 + L1M2a LINE L1 2856 3223 -3945 1491 152 7 65 chr1 39155128 39155418 -203508935 - AluJo SINE Alu -39 273 1 1608 125 146 20 chr1 39155434 39155649 -203508704 + L1PA16 LINE L1 5816 6079 -87 2361 109 0 0 chr1 39155649 39155953 -203508400 + AluSc SINE Alu 1 304 -5 1608 125 146 20 chr1 39155953 39156032 -203508321 + L1PA16 LINE L1 6079 6147 -19 3024 157 51 147 chr1 39156041 39156615 -203507738 + L1M2a LINE L1 3229 3856 -3311 2195 120 7 0 chr1 39156615 39156907 -203507446 + AluSx SINE Alu 1 294 -18 3024 157 51 147 chr1 39156907 39156922 -203507431 + L1M2a LINE L1 3856 3871 -3296 2331 90 7 7 chr1 39156922 39157222 -203507131 + AluSx SINE Alu 2 301 -11 1236 189 145 8 chr1 39157227 39157526 -203506827 - AluJb SINE Alu 0 333 1 3024 157 51 147 chr1 39157526 39157546 -203506807 + L1M2a LINE L1 3875 3895 -3272 795 111 0 0 chr1 39157546 39157645 -203506708 - AluS SINE Alu -212 100 2 3024 157 51 147 chr1 39157645 39157849 -203506504 + L1M2a LINE L1 3895 4061 -3106 1448 179 99 0 chr1 39157850 39158113 -203506240 + AluJo SINE Alu 1 289 -23 5815 134 72 4 chr1 39158120 39159099 -203505254 + L1MA5 LINE L1 5254 6298 -2 1462 129 9 0 chr1 39159154 39159364 -203504989 + AluJb SINE Alu 14 225 -87 189 0 0 0 chr1 39159374 39159395 -203504958 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 343 240 208 8 chr1 39159515 39159640 -203504713 + MER103 DNA DNA 16 165 -1 1908 147 16 3 chr1 39159680 39159986 -203504367 - AluSg SINE Alu 0 310 1 1617 153 3 93 chr1 39159988 39160157 -203504196 - AluJo SINE Alu -9 303 177 1844 79 9 0 chr1 39160157 39160386 -203503967 - AluSc SINE Alu -6 303 73 1617 153 3 93 chr1 39160386 39160549 -203503804 - AluJo SINE Alu -135 177 1 1622 168 0 11 chr1 39160663 39160954 -203503399 - AluJo SINE Alu 0 321 34 1968 164 0 3 chr1 39161010 39161315 -203503038 + AluSx SINE Alu 1 304 -8 536 225 106 12 chr1 39161808 39161968 -203502385 + L1MC5 LINE L1 7737 7911 -50 219 218 0 0 chr1 39162975 39163030 -203501323 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2499 74 0 7 chr1 39163142 39163451 -203500902 - AluSc SINE Alu -2 307 1 186 209 0 0 chr1 39163750 39163793 -203500560 + (TA)n Simple_repeat Simple_repeat 2 44 0 2215 112 10 0 chr1 39164106 39164400 -203499953 + AluSq SINE Alu 1 297 -16 24 32 0 0 chr1 39165801 39165832 -203498521 + AT_rich Low_complexity Low_complexity 1 31 0 219 211 0 0 chr1 39167595 39167633 -203496720 + (TG)n Simple_repeat Simple_repeat 2 39 0 1338 98 0 11 chr1 39168571 39168745 -203495608 - AluSg/x SINE Alu -9 303 132 23 33 0 0 chr1 39170073 39170103 -203494250 + AT_rich Low_complexity Low_complexity 1 30 0 1397 183 21 8 chr1 39170216 39170457 -203493896 - AluJo SINE Alu -68 244 1 2470 90 0 0 chr1 39170509 39170819 -203493534 + AluSq SINE Alu 1 310 -3 2329 92 0 13 chr1 39171294 39171597 -203492756 + AluSg SINE Alu 1 299 -11 2457 89 0 0 chr1 39171739 39172042 -203492311 + AluSc SINE Alu 1 303 -6 1218 111 0 0 chr1 39172232 39172385 -203491968 + AluSq SINE Alu 1 153 -160 606 74 0 0 chr1 39172385 39172466 -203491887 + AluSg/x SINE Alu 215 295 -15 2438 79 3 22 chr1 39172690 39173008 -203491345 + AluSq SINE Alu 1 312 -1 1273 91 108 0 chr1 39173839 39174015 -203490338 + AluSg SINE Alu 1 195 -115 727 124 0 0 chr1 39174153 39174266 -203490087 + AluSg SINE Alu 199 311 -1 195 69 0 0 chr1 39174517 39174546 -203489807 + (CA)n Simple_repeat Simple_repeat 1 29 0 623 212 8 8 chr1 39174795 39174927 -203489426 + FLAM_A SINE Alu 1 132 -1 390 269 38 51 chr1 39175351 39175521 -203488832 + MIR3 SINE MIR 15 181 -69 1825 155 4 4 chr1 39175521 39175799 -203488554 - AluJo SINE Alu -18 294 17 2355 113 3 0 chr1 39176186 39176496 -203487857 + AluSq SINE Alu 1 311 -2 278 26 26 0 chr1 39177602 39177641 -203486712 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 294 310 241 0 chr1 39179005 39179163 -203485190 + MIR SINE MIR 47 242 -20 22 35 0 0 chr1 39179525 39179554 -203484799 + AT_rich Low_complexity Low_complexity 1 29 0 2418 97 0 3 chr1 39179555 39179864 -203484489 - AluSg SINE Alu -2 308 1 1599 181 47 7 chr1 39179876 39180153 -203484200 - AluJo SINE Alu -24 288 1 933 202 0 12 chr1 39180172 39180340 -203484013 + FRAM SINE Alu 1 158 -18 2250 97 7 3 chr1 39180481 39180779 -203483574 - AluSx SINE Alu -13 299 1 2141 128 0 0 chr1 39181062 39181368 -203482985 - AluSx SINE Alu 0 306 1 1788 145 10 56 chr1 39181428 39181731 -203482622 + AluJb SINE Alu 1 289 -23 1790 150 41 27 chr1 39181903 39182196 -203482157 + AluJb SINE Alu 1 297 -15 1089 75 8 0 chr1 39182405 39182538 -203481815 + AluSq/x SINE Alu 1 134 -179 589 88 0 118 chr1 39182587 39182610 -203481743 + AluSc SINE Alu 110 134 -175 2624 64 0 3 chr1 39182610 39182922 -203481431 + AluY SINE Alu 1 311 0 589 88 0 118 chr1 39182922 39183000 -203481353 + AluSc SINE Alu 134 199 -110 333 151 0 0 chr1 39183000 39183053 -203481300 - AluJb SINE Alu -171 131 79 600 111 0 0 chr1 39183053 39183143 -203481210 + AluSg/x SINE Alu 207 296 -14 242 176 29 0 chr1 39183754 39183822 -203480531 + (TAA)n Simple_repeat Simple_repeat 1 70 0 1898 128 31 17 chr1 39184058 39184347 -203480006 + AluSx SINE Alu 1 293 -19 2247 95 16 7 chr1 39184355 39184661 -203479692 + AluSx SINE Alu 1 309 -3 2456 84 0 13 chr1 39185184 39185492 -203478861 + AluSx SINE Alu 1 304 -8 2104 137 3 3 chr1 39185759 39186058 -203478295 + AluSx SINE Alu 1 299 -13 2544 83 0 3 chr1 39186069 39186381 -203477972 + AluY SINE Alu 1 311 0 2212 104 7 0 chr1 39188016 39188294 -203476059 + AluSx SINE Alu 1 280 -32 213 108 0 0 chr1 39188297 39188334 -203476019 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 574 254 29 0 chr1 39188509 39188647 -203475706 + MIR SINE MIR 31 172 -90 229 277 106 11 chr1 39188797 39188891 -203475462 + MIR SINE MIR 114 216 -46 1036 121 0 0 chr1 39188997 39189172 -203475181 - AluSg/x SINE Alu 0 319 145 220 309 18 73 chr1 39189193 39189303 -203475050 - L3 LINE CR1 -852 725 622 22 0 0 0 chr1 39189367 39189389 -203474964 + AT_rich Low_complexity Low_complexity 1 22 0 2160 118 3 0 chr1 39189392 39189679 -203474674 - AluSx SINE Alu -24 288 1 936 125 0 7 chr1 39189679 39189815 -203474538 - AluJo SINE Alu -177 135 1 501 220 0 0 chr1 39189851 39189951 -203474402 - FLAM_A SINE Alu -41 101 2 1706 158 10 20 chr1 39190004 39190302 -203474051 + AluJb SINE Alu 1 295 -17 26 0 0 0 chr1 39190780 39190806 -203473547 + GC_rich Low_complexity Low_complexity 1 26 0 204 40 0 0 chr1 39191884 39191909 -203472444 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2366 98 0 16 chr1 39191914 39192231 -203472122 - AluSx SINE Alu 0 312 1 494 284 40 0 chr1 39192567 39192715 -203471638 - MER117 DNA MER1_type -39 158 5 278 149 0 0 chr1 39195777 39195824 -203468529 - Tigger5 DNA MER2_type -35 2288 2242 257 164 0 36 chr1 39195822 39195877 -203468476 + Tigger5 DNA MER2_type 2266 2318 -5 * 355 167 69 14 chr1 39195880 39195952 -203468401 - Tigger5 DNA MER2_type -2247 76 1 268 340 102 5 chr1 39196003 39196200 -203468153 + L2 LINE L2 2660 2875 -439 184 281 113 18 chr1 39196343 39196564 -203467789 - L2 LINE L2 -1137 2177 1936 784 170 0 22 chr1 39196588 39196723 -203467630 + FLAM_A SINE Alu 2 133 0 1546 157 52 30 chr1 39196986 39197291 -203467062 + AluJb SINE Alu 1 312 0 2130 145 7 0 chr1 39197300 39197610 -203466743 + AluJo SINE Alu 1 312 0 568 302 33 58 chr1 39199177 39199419 -203464934 - MIR SINE MIR -13 249 14 241 183 366 0 chr1 39200847 39200918 -203463435 - FLAM_A SINE Alu -12 121 25 192 97 0 0 chr1 39206594 39206625 -203457728 + (CAG)n Simple_repeat Simple_repeat 1 31 0 410 291 8 0 chr1 39207050 39207167 -203457186 - MIR SINE MIR -29 233 116 2257 95 26 7 chr1 39207299 39207605 -203456748 - AluSx SINE Alu 0 312 1 212 270 168 22 chr1 39207714 39207851 -203456502 + L2 LINE L2 2890 3046 -226 1402 161 64 115 chr1 39208010 39208174 -203456179 + L1MB8 LINE L1 5656 5827 -351 735 175 8 0 chr1 39208174 39208294 -203456059 + FLAM_A SINE Alu 1 121 -12 1402 161 64 115 chr1 39208294 39208308 -203456045 + L1MB8 LINE L1 5827 5840 -338 1633 143 70 18 chr1 39208308 39208580 -203455773 + AluJb SINE Alu 1 286 -26 1402 161 64 115 chr1 39208580 39208790 -203455563 + L1MB8 LINE L1 5840 6025 -153 1037 136 0 7 chr1 39208790 39208937 -203455416 - AluJb SINE Alu -90 222 77 637 139 29 29 chr1 39208937 39209074 -203455279 + L1MB8 LINE L1 6033 6169 -9 2337 110 0 3 chr1 39209076 39209384 -203454969 - AluSx SINE Alu -5 307 1 1728 166 63 3 chr1 39209392 39209676 -203454677 - AluJb SINE Alu -11 301 1 2347 80 0 3 chr1 39209682 39209969 -203454384 - AluY SINE Alu -10 301 16 2304 115 0 16 chr1 39209982 39210295 -203454058 - AluSx SINE Alu -4 308 1 2211 125 0 0 chr1 39210323 39210619 -203453734 + AluSq SINE Alu 1 296 -17 2239 96 0 14 chr1 39210621 39210935 -203453418 + AluSc SINE Alu 1 309 0 2254 77 42 0 chr1 39210937 39211209 -203453144 + AluY SINE Alu 1 287 -24 201 39 0 0 chr1 39211209 39211235 -203453118 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2254 77 42 0 chr1 39211235 39211247 -203453106 + AluY SINE Alu 287 297 -14 306 316 0 0 chr1 39211621 39211697 -203452656 + MIR SINE MIR 53 128 -80 347 231 43 43 chr1 39211722 39211839 -203452514 - MIR SINE MIR -29 233 117 411 258 111 83 chr1 39211992 39212077 -203452276 - MIR SINE MIR -34 228 147 1922 149 10 17 chr1 39212077 39212379 -203451974 + AluJb SINE Alu 1 300 -12 411 258 111 83 chr1 39212379 39212402 -203451951 - MIR SINE MIR -115 147 126 2190 95 37 0 chr1 39212402 39212698 -203451655 + AluSx SINE Alu 1 307 -5 411 258 111 83 chr1 39212698 39212805 -203451548 - MIR SINE MIR -136 126 6 272 256 105 60 chr1 39213395 39213528 -203450825 - MIR SINE MIR -28 234 96 2053 138 7 7 chr1 39213533 39213831 -203450522 + AluJb SINE Alu 1 298 -14 245 271 47 19 chr1 39214721 39214828 -203449525 + MIR3 SINE MIR 8 117 -91 443 268 0 0 chr1 39215858 39215955 -203448398 + MIR SINE MIR 48 144 -64 257 88 0 242 chr1 39215963 39215991 -203448362 + MER41A LTR ERV1 398 431 -123 1946 89 41 89 chr1 39215991 39216307 -203448046 - AluSc SINE Alu -8 301 1 257 88 0 242 chr1 39216307 39216332 -203448021 + MER41A LTR ERV1 431 424 -130 2428 64 0 10 chr1 39216332 39216643 -203447710 - AluY SINE Alu -3 308 1 257 88 0 242 chr1 39216643 39216679 -203447674 + MER41A LTR ERV1 423 466 -88 1783 125 0 84 chr1 39216883 39217203 -203447150 - AluSx SINE Alu -19 293 1 367 324 130 43 chr1 39217692 39217965 -203446388 + L2 LINE L2 1983 2311 -1003 1501 146 15 23 chr1 39217965 39218225 -203446128 - AluJo SINE Alu -16 296 39 367 324 130 43 chr1 39218225 39218396 -203445957 + L2 LINE L2 2311 2466 -848 2444 53 0 0 chr1 39218415 39218714 -203445639 - AluY SINE Alu -12 299 1 315 284 0 0 chr1 39218804 39218878 -203445475 - MER91A DNA MER1_type -121 75 2 223 269 0 30 chr1 39218987 39219054 -203445299 + L2 LINE L2 3201 3265 -7 520 304 65 0 chr1 39219150 39219318 -203445035 - MER5A DNA MER1_type 0 189 11 2376 73 0 3 chr1 39220448 39220748 -203443605 + AluY SINE Alu 1 299 -12 305 325 47 12 chr1 39220902 39221071 -203443282 + L2 LINE L2 2917 3091 -181 1810 139 21 10 chr1 39222196 39222484 -203441869 + AluJo SINE Alu 6 296 -16 290 331 50 8 chr1 39223048 39223169 -203441184 - L2 LINE L2 -224 3048 2923 1004 216 15 58 chr1 39223954 39224155 -203440198 - MIR SINE MIR 0 262 73 948 120 0 8 chr1 39224155 39224288 -203440065 + FLAM_C SINE Alu 2 133 0 1004 216 15 58 chr1 39224288 39224345 -203440008 - MIR SINE MIR -189 73 15 422 344 68 10 chr1 39224503 39224695 -203439658 - MIR SINE MIR -30 232 30 311 259 170 0 chr1 39225315 39225427 -203438926 + MIR SINE MIR 16 146 -116 372 329 58 7 chr1 39225436 39225573 -203438780 - MIR SINE MIR -71 191 48 364 260 10 10 chr1 39225607 39225707 -203438646 + MIR SINE MIR 162 261 -1 306 310 70 0 chr1 39226292 39226411 -203437942 - MIR SINE MIR -63 145 17 1779 120 19 0 chr1 39226620 39226879 -203437474 + AluSx SINE Alu 38 301 -11 2272 107 0 0 chr1 39226879 39227188 -203437165 + AluSg SINE Alu 1 309 -1 258 32 0 0 chr1 39227189 39227220 -203437133 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2278 101 0 0 chr1 39227220 39227517 -203436836 + AluSx SINE Alu 3 299 -13 2222 113 0 0 chr1 39227525 39227825 -203436528 + AluSg SINE Alu 6 305 -5 1981 106 50 10 chr1 39227850 39228151 -203436202 + AluSq SINE Alu 1 313 0 252 333 114 0 chr1 39228211 39228325 -203436028 + MIR SINE MIR 19 145 -63 183 245 174 31 chr1 39228512 39228610 -203435743 + MIR3 SINE MIR 5 116 -92 287 219 68 0 chr1 39228614 39228687 -203435666 - MIR SINE MIR -83 179 102 195 319 44 48 chr1 39228974 39229244 -203435109 + L2 LINE L2 2475 2743 -571 213 257 28 28 chr1 39229940 39230084 -203434269 + (TG)n Simple_repeat Simple_repeat 2 145 0 236 286 99 0 chr1 39231087 39231178 -203433175 - MIR SINE MIR -79 183 84 38 85 0 0 chr1 39231470 39231564 -203432789 + GC_rich Low_complexity Low_complexity 1 94 0 23 33 0 0 chr1 39231701 39231731 -203432622 + GC_rich Low_complexity Low_complexity 1 30 0 276 325 24 0 chr1 39232127 39232250 -203432103 - L2 LINE L2 -553 2761 2636 753 243 4 0 chr1 39232877 39233357 -203430996 + (TG)n Simple_repeat Simple_repeat 1 482 0 677 247 134 0 chr1 39233975 39234161 -203430192 + MIR SINE MIR 2 212 -50 373 260 9 49 chr1 39234787 39234932 -203429421 + MIR3 SINE MIR 45 186 -22 404 314 58 7 chr1 39235025 39235162 -203429191 + MIR SINE MIR 8 151 -111 1047 233 9 18 chr1 39235182 39235401 -203428952 - MIR SINE MIR -10 252 36 2260 85 3 0 chr1 39235453 39235747 -203428606 + AluSc SINE Alu 15 309 0 2192 68 14 0 chr1 39235758 39236059 -203428294 + AluSp SINE Alu 1 305 0 905 191 0 0 chr1 39236059 39236299 -203428054 + AluJo/FRAM SINE Alu 137 376 0 2129 123 0 0 chr1 39236301 39236601 -203427752 + AluSx SINE Alu 1 300 -12 485 231 168 0 chr1 39237432 39237575 -203426778 + MER45A DNA AcHobo 1 167 -11 1482 151 171 0 chr1 39237657 39237915 -203426438 + AluJb SINE Alu 1 302 0 2100 119 0 0 chr1 39237925 39238234 -203426119 - AluSp SINE Alu 0 309 1 381 243 37 28 chr1 39238234 39238341 -203426012 - L2 LINE L2 -12 3301 3194 585 280 91 6 chr1 39238414 39238649 -203425704 - MIR SINE MIR 0 262 4 195 262 272 0 chr1 39238658 39238761 -203425592 + L2 LINE L2 3142 3272 0 359 164 0 0 chr1 39338763 39338818 -203325535 - Alu SINE Alu -248 55 1 250 115 0 131 chr1 39338819 39338843 -203325510 + MER41B LTR ERV1 495 521 -114 2409 64 0 10 chr1 39338843 39339154 -203325199 - AluY SINE Alu -3 308 1 250 115 0 131 chr1 39339154 39339190 -203325163 + MER41B LTR ERV1 521 547 -88 1748 125 0 84 chr1 39339394 39339714 -203324639 - AluSx SINE Alu -19 293 1 344 316 133 43 chr1 39340249 39340476 -203323877 + L2 LINE L2 2032 2237 -1077 1473 146 15 23 chr1 39340476 39340736 -203323617 - AluJo SINE Alu -16 296 39 344 316 133 43 chr1 39340736 39340907 -203323446 + L2 LINE L2 2237 2466 -848 2423 53 0 0 chr1 39340926 39341225 -203323128 - AluY SINE Alu -12 299 1 316 284 0 0 chr1 39341315 39341389 -203322964 - MER91A DNA MER1_type -121 75 2 216 269 0 30 chr1 39341498 39341565 -203322788 + L2 LINE L2 3201 3265 -7 489 304 65 0 chr1 39341661 39341829 -203322524 - MER5A DNA MER1_type 0 189 11 2357 73 0 3 chr1 39342959 39343259 -203321094 + AluY SINE Alu 1 299 -12 290 290 59 24 chr1 39343413 39343582 -203320771 + L2 LINE L2 2917 3091 -181 1781 139 21 10 chr1 39344707 39344995 -203319358 + AluJo SINE Alu 6 296 -16 283 331 50 8 chr1 39345559 39345680 -203318673 - L2 LINE L2 -224 3048 2923 993 216 15 58 chr1 39346465 39346666 -203317687 - MIR SINE MIR 0 262 73 950 120 0 8 chr1 39346666 39346799 -203317554 + FLAM_C SINE Alu 2 133 0 993 216 15 58 chr1 39346799 39346856 -203317497 - MIR SINE MIR -189 73 15 380 292 29 15 chr1 39347064 39347201 -203317152 - MIR SINE MIR -89 173 35 299 259 170 0 chr1 39347826 39347938 -203316415 + MIR SINE MIR 16 146 -116 348 329 58 7 chr1 39347947 39348084 -203316269 - MIR SINE MIR -71 191 48 364 260 10 10 chr1 39348118 39348218 -203316135 + MIR SINE MIR 162 261 -1 284 310 70 0 chr1 39348803 39348922 -203315431 - MIR SINE MIR -63 145 17 1759 120 19 0 chr1 39349131 39349390 -203314963 + AluSx SINE Alu 38 301 -11 2256 91 0 0 chr1 39349390 39349687 -203314666 + AluSg SINE Alu 1 297 -13 258 32 0 0 chr1 39349700 39349731 -203314622 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2252 101 0 0 chr1 39349731 39350028 -203314325 + AluSx SINE Alu 3 299 -13 2182 117 0 0 chr1 39350036 39350336 -203314017 + AluSg SINE Alu 6 305 -5 1957 106 50 10 chr1 39350361 39350662 -203313691 + AluSq SINE Alu 1 313 0 223 333 114 0 chr1 39350722 39350836 -203313517 + MIR SINE MIR 19 145 -63 283 197 75 0 chr1 39351125 39351198 -203313155 - MIR SINE MIR -31 177 103 213 257 28 28 chr1 39352451 39352595 -203311758 + (TG)n Simple_repeat Simple_repeat 2 145 0 211 286 99 0 chr1 39353598 39353689 -203310664 - MIR SINE MIR -79 183 84 38 85 0 0 chr1 39353981 39354075 -203310278 + GC_rich Low_complexity Low_complexity 1 94 0 23 33 0 0 chr1 39354212 39354242 -203310111 + GC_rich Low_complexity Low_complexity 1 30 0 248 325 24 0 chr1 39354638 39354761 -203309592 - L2 LINE L2 -553 2761 2636 792 198 0 0 chr1 39355388 39355645 -203308708 + (TG)n Simple_repeat Simple_repeat 1 257 0 309 247 12 35 chr1 39355668 39355838 -203308515 + (TG)n Simple_repeat Simple_repeat 1 166 0 1962 110 65 0 chr1 39356196 39356487 -203307866 + AluSq SINE Alu 1 310 -3 577 268 102 21 chr1 39356882 39357117 -203307236 + L2 LINE L2 3011 3264 -49 414 256 136 37 chr1 39357130 39357285 -203307068 - MIR SINE MIR -51 211 32 748 157 0 0 chr1 39357285 39357400 -203306953 - FLAM_C SINE Alu -18 115 1 414 256 136 37 chr1 39357400 39357435 -203306918 - MIR SINE MIR -230 32 2 196 321 62 25 chr1 39357435 39357495 -203306858 + L2 LINE L2 3251 3313 0 21 36 0 0 chr1 39358423 39358451 -203305902 + AT_rich Low_complexity Low_complexity 1 28 0 2142 119 0 3 chr1 39358451 39358761 -203305592 - AluY SINE Alu -2 309 1 1860 80 3 142 chr1 39358761 39359112 -203305241 - AluSx SINE Alu -9 303 1 3123 123 53 47 chr1 39359112 39359691 -203304662 - Tigger1 DNA MER2_type -1810 608 26 403 292 65 27 chr1 39360094 39360279 -203304074 - L2 LINE L2 -5 3308 3117 362 233 14 0 chr1 39360309 39360382 -203303971 + MER58B DNA MER1_type 1 74 -267 1481 159 73 10 chr1 39360385 39360674 -203303679 - AluSg SINE Alu -2 308 2 1877 92 85 0 chr1 39360675 39360957 -203303396 - AluSx SINE Alu -6 306 1 860 164 0 0 chr1 39360958 39361098 -203303255 - FLAM_C SINE Alu -3 140 1 732 167 203 40 chr1 39361100 39361146 -203303207 + MER58B DNA MER1_type 79 116 -2304 2335 83 3 0 chr1 39361146 39361446 -203302907 + AluSp SINE Alu 1 301 -12 732 167 203 40 chr1 39361446 39361621 -203302732 + MER58B DNA MER1_type 116 336 -5 916 305 55 71 chr1 39361652 39361948 -203302405 - L2 LINE L2 -211 3061 2762 2318 62 20 10 chr1 39361948 39362253 -203302100 - AluY SINE Alu -1 310 3 916 305 55 71 chr1 39362253 39362307 -203302046 - L2 LINE L2 -510 2762 2709 2059 125 6 6 chr1 39362307 39362618 -203301735 - AluSx SINE Alu -1 311 1 916 305 55 71 chr1 39362618 39362900 -203301453 - L2 LINE L2 -563 2709 2430 1407 16 0 27 chr1 39363128 39363313 -203301040 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2281 93 10 3 chr1 39363319 39363630 -203300723 - AluSq SINE Alu 0 313 1 191 429 0 0 chr1 39363639 39363765 -203300588 + L2 LINE L2 2421 2546 -768 258 355 158 0 chr1 39363918 39364070 -203300283 + L2 LINE L2 2682 2857 -457 1102 291 119 43 chr1 39364389 39364475 -203299878 + MLT1K LTR MaLR 5 83 -505 2157 116 3 0 chr1 39364475 39364785 -203299568 + AluSx SINE Alu 2 312 0 1102 291 119 43 chr1 39364785 39365237 -203299116 + MLT1K LTR MaLR 83 584 -4 204 342 26 95 chr1 39365589 39365633 -203298720 - MER5B DNA MER1_type -1 177 132 1575 177 7 23 chr1 39365633 39365805 -203298548 - AluJo SINE Alu -7 305 139 1613 171 0 40 chr1 39365805 39366126 -203298227 - AluJo SINE Alu -2 310 3 1575 177 7 23 chr1 39366126 39366263 -203298090 - AluJo SINE Alu -173 139 1 204 342 26 95 chr1 39366263 39366408 -203297945 - MER5B DNA MER1_type -46 132 1 338 0 0 23 chr1 39366447 39366490 -203297863 + (TA)n Simple_repeat Simple_repeat 1 42 0 2117 112 3 7 chr1 39366491 39366787 -203297566 - AluSx SINE Alu -17 295 1 2407 69 0 0 chr1 39366803 39367109 -203297244 - AluY SINE Alu -5 306 1 1355 161 0 27 chr1 39367633 39367857 -203296496 + MER20 DNA MER1_type 1 218 -1 2096 148 6 3 chr1 39367916 39368227 -203296126 + AluJo SINE Alu 1 312 0 2086 143 0 3 chr1 39368227 39368527 -203295826 + AluSx SINE Alu 1 299 -13 392 271 25 25 chr1 39368774 39368892 -203295461 + MIR SINE MIR 20 137 -125 2274 116 0 0 chr1 39369101 39369404 -203294949 + AluSx SINE Alu 1 303 -9 1814 108 12 12 chr1 39370135 39370376 -203293977 + AluSq SINE Alu 1 241 -72 1799 104 121 32 chr1 39370376 39370722 -203293631 - MER51B LTR ERV1 0 377 1 310 140 0 0 chr1 39370722 39370779 -203293574 + AluSq SINE Alu 236 292 -8 2259 98 0 7 chr1 39370862 39371157 -203293196 - AluSc SINE Alu -16 293 1 1164 128 18 0 chr1 39371157 39371321 -203293032 - AluSg/x SINE Alu -7 303 137 2229 127 7 0 chr1 39371325 39371624 -203292729 - AluSx SINE Alu -11 301 1 906 240 60 9 chr1 39371624 39371857 -203292496 - MER63B DNA MER1_type -191 245 1 2531 64 0 3 chr1 39371964 39372261 -203292092 - AluY SINE Alu -13 298 3 225 133 222 0 chr1 39372446 39372491 -203291862 + L2 LINE L2 3193 3247 -66 857 181 8 106 chr1 39372658 39372895 -203291458 + MER20 DNA MER1_type 6 219 0 521 156 167 0 chr1 39373931 39374027 -203290326 + FLAM_C SINE Alu 2 113 -30 1749 126 11 7 chr1 39374066 39374336 -203290017 + AluSx SINE Alu 38 308 -4 1008 73 0 8 chr1 39374340 39374464 -203289889 + AluSq/x SINE Alu 24 146 -166 2217 121 0 3 chr1 39374465 39374771 -203289582 + AluSc SINE Alu 3 307 -2 22 0 0 0 chr1 39374771 39374793 -203289560 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 39374896 39374916 -203289437 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2270 109 0 0 chr1 39374929 39375223 -203289130 - AluSq SINE Alu -19 294 1 1964 117 8 0 chr1 39375223 39375488 -203288865 - AluSx SINE Alu -11 301 35 1773 98 0 0 chr1 39375519 39375744 -203288609 + AluSg/x SINE Alu 83 307 -3 1117 149 0 23 chr1 39375744 39375919 -203288434 + AluSc SINE Alu 139 309 0 761 162 56 22 chr1 39375986 39376165 -203288188 - MER53 DNA DNA -2 187 3 1851 157 3 31 chr1 39376224 39376542 -203287811 - AluJo SINE Alu -3 309 1 313 323 104 10 chr1 39376574 39376766 -203287587 + L2 LINE L2 2612 2821 -493 487 315 194 9 chr1 39376917 39377404 -203286949 - L2 LINE L2 -27 3245 2661 2096 110 3 45 chr1 39377583 39377891 -203286462 - AluSq SINE Alu -18 295 1 2159 116 34 0 chr1 39377951 39378245 -203286108 + AluSq SINE Alu 1 304 -9 410 263 51 0 chr1 39378252 39378370 -203285983 - MIR SINE MIR -16 246 123 226 147 0 0 chr1 39378385 39378419 -203285934 + Alu SINE Alu 1 34 -265 359 253 13 0 chr1 39378467 39378546 -203285807 - MIR SINE MIR -169 93 14 1829 142 7 0 chr1 39378658 39378932 -203285421 + AluSx SINE Alu 1 276 -36 234 0 0 0 chr1 39378934 39378960 -203285393 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 262 290 10 50 chr1 39379429 39379529 -203284824 - MER5A DNA MER1_type 0 189 94 316 119 15 30 chr1 39379854 39379921 -203284432 + AluSp/q SINE Alu 237 302 -1 410 263 51 0 chr1 39379931 39380049 -203284304 - MIR SINE MIR -16 246 123 226 147 0 0 chr1 39380064 39380098 -203284255 + AluJb SINE Alu 1 34 -267 359 253 13 0 chr1 39380146 39380225 -203284128 - MIR SINE MIR -169 93 14 2201 123 0 3 chr1 39380337 39380647 -203283706 + AluSx SINE Alu 1 309 -3 2077 95 0 4 chr1 39380700 39380964 -203283389 - AluSx SINE Alu -22 290 28 346 139 13 0 chr1 39381019 39381098 -203283255 + L1MB3 LINE L1 4976 5055 -1091 2391 106 153 150 chr1 39381136 39381971 -203282382 - pTR5 LTR ERV1 0 2438 1286 646 177 15 15 chr1 39381945 39382075 -203282278 + pTR5 LTR ERV1 1181 1310 -1128 * 673 162 6 75 chr1 39382047 39382220 -203282133 - pTR5 LTR ERV1 -1535 903 743 1960 130 0 0 chr1 39382220 39382489 -203281864 + AluJb SINE Alu 31 299 -13 2521 73 7 0 chr1 39382513 39382816 -203281537 + AluY SINE Alu 1 305 -6 3923 147 14 29 chr1 39382817 39383052 -203281301 + L1MB3 LINE L1 5193 5430 -753 2255 112 0 10 chr1 39383052 39383355 -203280998 + AluSg SINE Alu 1 300 -10 3923 147 14 29 chr1 39383355 39383897 -203280456 + L1MB3 LINE L1 5430 5959 -224 1997 93 0 0 chr1 39383897 39384145 -203280208 + AluSx SINE Alu 42 289 -23 182 222 44 0 chr1 39384448 39384493 -203279860 - MIR SINE MIR -108 154 108 2028 99 7 32 chr1 39385002 39385286 -203279067 + AluSx SINE Alu 1 277 -35 296 327 51 13 chr1 39385387 39385543 -203278810 + MIR SINE MIR 47 208 -54 244 313 10 40 chr1 39385721 39385820 -203278533 + MER5A DNA MER1_type 94 189 0 234 0 0 0 chr1 39386288 39386314 -203278039 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1698 126 15 15 chr1 39386316 39386578 -203277775 - AluSx SINE Alu -36 276 15 254 359 0 0 chr1 39386606 39386684 -203277669 - L2 LINE L2 -14 3258 3181 2291 89 7 7 chr1 39386728 39387031 -203277322 + AluSx SINE Alu 1 303 -9 2165 100 14 4 chr1 39387031 39387347 -203277006 + AluSp SINE Alu 1 319 0 258 56 0 0 chr1 39387544 39387580 -203276773 + (A)n Simple_repeat Simple_repeat 1 36 0 2216 112 3 0 chr1 39387585 39387881 -203276472 + AluY SINE Alu 1 297 -14 994 175 0 12 chr1 39387968 39388139 -203276214 - AluJo SINE Alu -17 295 127 1061 103 0 0 chr1 39388326 39388462 -203275891 + AluSq/x SINE Alu 1 136 -176 1794 145 10 24 chr1 39388462 39388752 -203275601 + AluSq SINE Alu 1 286 -27 936 84 0 17 chr1 39388852 39389001 -203275352 + AluSg/x SINE Alu 167 313 0 310 312 102 19 chr1 39389001 39389216 -203275137 - L1 LINE L1 -2564 3582 3350 1701 181 24 11 chr1 39389222 39389509 -203274844 - AluJo SINE Alu -21 291 1 616 138 9 9 chr1 39389509 39389611 -203274742 - L1M4 LINE L1 -689 5495 5391 2486 68 7 10 chr1 39389612 39389919 -203274434 - AluY SINE Alu -5 306 1 1040 187 32 54 chr1 39389919 39389952 -203274401 - L1M4 LINE L1 -947 5199 5167 2413 84 3 0 chr1 39389952 39390250 -203274103 - AluY SINE Alu -12 299 1 1040 187 32 54 chr1 39390250 39390468 -203273885 - L1M4 LINE L1 -979 5167 4954 1805 171 14 0 chr1 39390468 39390754 -203273599 - AluJo SINE Alu -22 290 1 1040 187 32 54 chr1 39390754 39390817 -203273536 - L1M4 LINE L1 -1192 4954 4891 444 141 0 0 chr1 39390817 39390888 -203273465 + AluSp/q SINE Alu 235 305 -8 2544 74 0 0 chr1 39390889 39391186 -203273167 - AluY SINE Alu -12 299 3 2239 104 0 3 chr1 39391188 39391486 -203272867 - AluSx SINE Alu -15 297 1 934 215 36 65 chr1 39391490 39391537 -203272816 - MER97c DNA MER1_type? -819 271 224 2220 120 3 0 chr1 39391537 39391829 -203272524 + AluSx SINE Alu 3 295 -17 1891 159 10 7 chr1 39391833 39392141 -203272212 + AluJb SINE Alu 1 309 -3 934 215 36 65 chr1 39392141 39392367 -203271986 - MER97c DNA MER1_type? -869 221 1 624 221 0 8 chr1 39392556 39392678 -203271675 + FLAM_A SINE Alu 1 121 -12 2337 80 10 7 chr1 39392750 39393039 -203271314 - AluSp SINE Alu -10 303 14 1498 179 24 16 chr1 39393119 39393370 -203270983 + AluJb SINE Alu 1 253 -59 362 308 19 0 chr1 39393591 39393695 -203270658 - MIR SINE MIR -62 146 41 2061 126 0 17 chr1 39394403 39394697 -203269656 + AluJo SINE Alu 13 301 -11 1940 150 0 46 chr1 39394699 39395026 -203269327 + AluJb SINE Alu 1 312 0 456 320 169 12 chr1 39395073 39395392 -203268961 + L2 LINE L2 2597 2965 -349 1291 130 11 0 chr1 39395413 39395597 -203268756 - AluSg/x SINE Alu -22 290 105 440 236 22 28 chr1 39395597 39395775 -203268578 - AluY SINE Alu -5 306 130 378 301 23 74 chr1 39396371 39396483 -203267870 - MIR SINE MIR -88 174 73 2488 74 0 0 chr1 39396483 39396781 -203267572 - AluSc SINE Alu -11 298 1 378 301 23 74 chr1 39396781 39396844 -203267509 - MIR SINE MIR -189 73 8 3228 235 120 36 chr1 39397315 39398107 -203266246 + L2 LINE L2 1842 2751 -562 2414 80 0 0 chr1 39398107 39398406 -203265947 + AluY SINE Alu 1 299 -12 3228 235 120 36 chr1 39398406 39398764 -203265589 + L2 LINE L2 2751 3077 -236 2290 100 7 3 chr1 39398766 39399067 -203265286 + AluSx SINE Alu 1 302 -10 860 151 0 0 chr1 39399085 39399204 -203265149 + FLAM_C SINE Alu 6 124 -19 555 165 0 0 chr1 39399249 39399346 -203265007 + AluJ/FRAM SINE Alu 216 312 0 26 0 0 0 chr1 39399348 39399374 -203264979 + AT_rich Low_complexity Low_complexity 1 26 0 1838 182 3 0 chr1 39399374 39399681 -203264672 + AluJo SINE Alu 1 308 -4 559 202 47 16 chr1 39399773 39399902 -203264451 + L2 LINE L2 3181 3313 0 630 284 100 61 chr1 39399933 39400585 -203263768 + L2 LINE L2 2591 3267 -5 2024 143 13 0 chr1 39400673 39400981 -203263372 + AluJb SINE Alu 1 312 0 260 291 73 36 chr1 39401836 39401946 -203262407 + L2 LINE L2 3156 3269 -3 233 191 0 0 chr1 39401949 39401991 -203262362 + (TGGG)n Simple_repeat Simple_repeat 1 42 0 435 325 126 5 chr1 39402148 39402339 -203262014 - MIR SINE MIR -48 214 1 429 20 0 0 chr1 39402886 39402936 -203261417 + (CA)n Simple_repeat Simple_repeat 1 50 0 764 233 61 0 chr1 39403189 39403369 -203260984 - MIR SINE MIR -34 228 38 1006 246 42 4 chr1 39404107 39404347 -203260006 + MIR SINE MIR 1 249 -13 256 295 0 0 chr1 39404965 39405043 -203259310 + L2 LINE L2 2972 3049 -223 187 358 52 30 chr1 39405093 39405227 -203259126 + L2 LINE L2 3128 3264 -8 2183 96 0 3 chr1 39405443 39405763 -203258590 + AluSg SINE Alu 1 319 0 712 292 60 9 chr1 39405765 39405998 -203258355 - MIR SINE MIR -3 259 15 396 313 37 12 chr1 39406137 39406300 -203258053 - MIR SINE MIR -66 196 30 181 81 27 27 chr1 39407741 39407778 -203256575 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 239 149 21 0 chr1 39408280 39408327 -203256026 + L1ME2 LINE L1 6099 6146 -18 2305 86 3 26 chr1 39408339 39408641 -203255712 + AluY SINE Alu 1 295 -16 1372 133 13 36 chr1 39408678 39408903 -203255450 + AluJb SINE Alu 88 307 -5 1789 162 69 0 chr1 39409058 39409348 -203255005 - AluJb SINE Alu -2 310 1 2324 105 3 0 chr1 39409920 39410226 -203254127 - AluSx SINE Alu -5 307 1 376 263 109 19 chr1 39410651 39410807 -203253546 + L1MC/D LINE L1 5406 5575 -546 332 315 118 6 chr1 39410815 39410993 -203253360 + L1MC/D LINE L1 5631 5828 -1980 2209 123 7 0 chr1 39411079 39411381 -203252972 + AluSg SINE Alu 1 304 -6 589 109 20 10 chr1 39411389 39411490 -203252863 + MER2 DNA MER2_type 97 198 -147 1315 128 0 0 chr1 39411553 39411732 -203252621 - AluSg/x SINE Alu -19 293 115 333 85 0 0 chr1 39411832 39411879 -203252474 + Alu SINE Alu 245 291 -9 2168 126 0 3 chr1 39411884 39412177 -203252176 - AluSx SINE Alu -20 292 1 967 163 182 1 chr1 39412201 39412422 -203251931 - L1MA8 LINE L1 -37 6254 5991 2416 91 0 16 chr1 39412422 39412731 -203251622 - AluSx SINE Alu -8 304 1 967 163 182 1 chr1 39412731 39412772 -203251581 - L1MA8 LINE L1 -300 5991 5959 607 197 7 35 chr1 39412848 39412990 -203251363 - AluJo SINE Alu -173 139 2 1148 144 154 0 chr1 39412999 39413207 -203251146 - AluJo SINE Alu -10 302 63 322 284 54 143 chr1 39413342 39413439 -203250914 - L2 LINE L2 0 3272 3168 1864 146 61 3 chr1 39413439 39413734 -203250619 - AluSx SINE Alu 0 312 1 322 284 54 143 chr1 39413734 39413745 -203250608 - L2 LINE L2 -104 3168 3158 2338 84 10 0 chr1 39413745 39414041 -203250312 - AluY SINE Alu -12 299 1 322 284 54 143 chr1 39414041 39414232 -203250121 - L2 LINE L2 -114 3158 3012 318 26 0 0 chr1 39414232 39414271 -203250082 + (TG)n Simple_repeat Simple_repeat 1 39 0 322 284 54 143 chr1 39414271 39414360 -203249993 - L2 LINE L2 -260 3012 2917 2194 90 0 4 chr1 39414765 39415043 -203249310 - AluSc SINE Alu -13 296 20 2202 92 3 33 chr1 39415180 39415484 -203248869 + AluY SINE Alu 1 295 -16 1453 124 9 35 chr1 39415521 39415747 -203248606 + AluJb SINE Alu 88 307 -5 1917 174 3 6 chr1 39415902 39416213 -203248140 - AluJb SINE Alu -2 310 1 22 0 0 0 chr1 39416213 39416235 -203248118 + AT_rich Low_complexity Low_complexity 1 22 0 284 294 56 0 chr1 39416508 39416634 -203247719 + L1M4 LINE L1 5008 5140 -1006 2355 67 3 7 chr1 39416673 39416970 -203247383 + AluY SINE Alu 12 307 -4 1672 162 56 3 chr1 39416975 39417259 -203247094 + AluJo SINE Alu 14 312 0 2362 113 0 0 chr1 39417536 39417838 -203246515 + AluSx SINE Alu 1 302 -10 495 60 0 0 chr1 39417963 39418030 -203246323 + (TA)n Simple_repeat Simple_repeat 2 68 0 2368 49 49 3 chr1 39418206 39418491 -203245862 - AluY SINE Alu -13 298 1 2234 196 22 78 chr1 39418742 39419320 -203245033 + MLT2B3 LTR ERVL 1 546 -8 246 135 0 19 chr1 39419521 39419573 -203244780 + L1MB4 LINE L1 6128 6178 -2 287 214 48 63 chr1 39419594 39419720 -203244633 + L1MC4 LINE L1 7918 8041 -1 1708 159 0 23 chr1 39419849 39420158 -203244195 + AluSx SINE Alu 1 302 -10 325 98 0 0 chr1 39420158 39420209 -203244144 + AluJo SINE Alu 83 133 -169 1884 62 112 0 chr1 39420212 39420470 -203243883 + AluY SINE Alu 1 287 -24 701 186 0 159 chr1 39420495 39420715 -203243638 + AluJo SINE Alu 121 305 -7 645 222 0 8 chr1 39421148 39421274 -203243079 + FLAM_C SINE Alu 2 126 -17 1315 199 9 41 chr1 39421284 39421601 -203242752 + AluY SINE Alu 2 308 -3 2124 119 7 0 chr1 39421617 39421927 -203242426 - AluSx SINE Alu 0 312 1 2014 145 0 0 chr1 39421927 39422230 -203242123 - AluSq SINE Alu -10 303 1 1923 101 54 0 chr1 39422243 39422520 -203241833 - AluSp SINE Alu -20 293 2 402 174 0 0 chr1 39422828 39422897 -203241456 + AluJ/FLAM SINE Alu 9 77 -235 188 211 0 19 chr1 39422927 39422979 -203241374 + GA-rich Low_complexity Low_complexity 2 52 0 233 181 83 56 chr1 39422994 39423066 -203241287 + MER3 DNA MER1_type 1 74 -135 2056 81 4 0 chr1 39423212 39423483 -203240870 - AluY SINE Alu -39 272 1 1666 142 0 0 chr1 39423511 39423764 -203240589 + AluSx SINE Alu 1 253 -59 693 221 73 29 chr1 39423907 39424111 -203240242 + MIR SINE MIR 31 243 -19 181 167 71 24 chr1 39424365 39424407 -203239946 - L2 LINE L2 -541 2773 2730 2093 114 0 7 chr1 39424577 39424876 -203239477 + AluSx SINE Alu 3 299 -13 2299 64 3 14 chr1 39425024 39425321 -203239032 + AluSg SINE Alu 1 294 -16 565 122 26 95 chr1 39425968 39426157 -203238196 + SVA Other Other 658 833 -553 878 98 8 0 chr1 39426425 39426547 -203237806 - AluSq/x SINE Alu -189 124 2 1436 126 20 31 chr1 39427135 39427389 -203236964 - AluJo SINE Alu -52 260 10 334 186 39 69 chr1 39427524 39427626 -203236727 + L1MC5 LINE L1 7831 7929 -32 1700 141 0 21 chr1 39427628 39427912 -203236441 + AluJo SINE Alu 1 278 -34 201 121 0 0 chr1 39427912 39427945 -203236408 + (CA)n Simple_repeat Simple_repeat 2 34 0 2156 96 3 10 chr1 39428093 39428396 -203235957 - AluSp SINE Alu -12 301 1 2107 120 0 0 chr1 39428803 39429095 -203235258 - AluSg SINE Alu -16 294 3 2137 106 10 10 chr1 39429097 39429409 -203234944 - AluSx SINE Alu 0 312 1 913 140 0 0 chr1 39429409 39429545 -203234808 - AluSq/x SINE Alu -177 136 1 815 160 0 14 chr1 39429553 39429697 -203234656 - FLAM_C SINE Alu -1 142 1 269 319 99 11 chr1 39430541 39430632 -203233721 - L2 LINE L2 -1 3271 3173 3422 179 75 62 chr1 39430862 39431275 -203233078 + L1M4 LINE L1 3898 4304 -1842 2060 117 3 7 chr1 39431275 39431573 -203232780 + AluSx SINE Alu 1 297 -15 3422 179 75 62 chr1 39431573 39431593 -203232760 + L1M4 LINE L1 4304 4322 -1824 291 28 0 0 chr1 39431593 39431629 -203232724 + (CA)n Simple_repeat Simple_repeat 1 36 0 3422 179 75 62 chr1 39431629 39432138 -203232215 + L1M4 LINE L1 4322 4853 -1293 216 0 0 0 chr1 39432142 39432166 -203232187 + (T)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr1 39434566 39434606 -203229747 + AT_rich Low_complexity Low_complexity 1 40 0 204 40 0 0 chr1 39435028 39435053 -203229300 + (A)n Simple_repeat Simple_repeat 1 25 0 191 291 154 18 chr1 39436012 39436122 -203228231 - MIR SINE MIR -40 222 98 1487 133 4 70 chr1 39436236 39436507 -203227846 + AluSx SINE Alu 1 253 -59 181 281 115 21 chr1 39438820 39438916 -203225437 - L2 LINE L2 -35 3237 3133 2189 114 0 0 chr1 39439690 39439996 -203224357 + AluSx SINE Alu 1 306 -6 634 89 20 10 chr1 39440004 39440105 -203224248 + MER2 DNA MER2_type 97 198 -147 2021 130 0 0 chr1 39440167 39440460 -203223893 - AluSx SINE Alu -19 293 1 1719 80 0 0 chr1 39440486 39440710 -203223643 + AluSg/x SINE Alu 81 304 -8 348 302 29 22 chr1 39440874 39441013 -203223340 + MARNA DNA Mariner 126 265 -321 2022 125 3 3 chr1 39441881 39442193 -203222160 + AluSx SINE Alu 1 312 0 771 92 0 0 chr1 39442514 39442623 -203221730 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 2267 99 3 0 chr1 39442914 39443226 -203221127 - AluSp SINE Alu 0 313 1 243 0 0 0 chr1 39444488 39444515 -203219838 + (CA)n Simple_repeat Simple_repeat 2 28 0 2260 110 0 0 chr1 39444827 39445137 -203219216 + AluSx SINE Alu 1 310 -2 2328 78 3 0 chr1 39445586 39445894 -203218459 + AluY SINE Alu 1 309 -2 598 141 0 0 chr1 39447072 39447157 -203217196 + AluJo SINE Alu 1 85 -227 1769 138 7 0 chr1 39447394 39447670 -203216683 + AluSx SINE Alu 1 278 -34 2243 56 24 0 chr1 39447670 39447958 -203216395 + AluY SINE Alu 1 295 -16 1467 113 9 5 chr1 39449775 39450010 -203214343 + L1PB1 LINE L1 5928 6163 0 822 201 70 61 chr1 39455713 39455927 -203208426 + AluJo SINE Alu 90 305 -7 923 167 8 114 chr1 39455929 39456067 -203208286 + AluJo SINE Alu 1 103 -209 2223 84 0 10 chr1 39456067 39456366 -203207987 - AluSp SINE Alu -17 296 1 923 167 8 114 chr1 39456366 39456473 -203207880 + AluJo SINE Alu 103 220 -92 2162 72 11 7 chr1 39456909 39457187 -203207166 + AluSp SINE Alu 20 298 -15 648 221 0 8 chr1 39457264 39457386 -203206967 - FLAM_A SINE Alu -12 121 1 934 251 35 0 chr1 39457573 39457800 -203206553 + MER97c DNA MER1_type? 1 235 -855 1850 146 3 7 chr1 39457806 39458108 -203206245 - AluJb SINE Alu -11 301 1 1102 122 0 0 chr1 39458112 39458276 -203206077 - AluSg/x SINE Alu -17 295 132 477 116 72 101 chr1 39458276 39458343 -203206010 - MER97b DNA MER1_type? -330 723 660 2109 85 4 4 chr1 39458343 39458624 -203205729 - AluSq SINE Alu -8 305 25 477 116 72 101 chr1 39458624 39458694 -203205659 - MER97b DNA MER1_type? -393 660 590 1767 129 36 26 chr1 39458712 39459014 -203205339 - AluSx SINE Alu -7 305 1 1306 209 73 19 chr1 39459042 39459062 -203205291 - MER97b DNA MER1_type? -443 610 593 1868 167 3 0 chr1 39459062 39459367 -203204986 + AluJo SINE Alu 3 308 -4 1306 209 73 19 chr1 39459367 39459661 -203204692 - MER97b DNA MER1_type? -460 593 279 2164 114 0 3 chr1 39459663 39459971 -203204382 + AluSx SINE Alu 1 307 -5 2328 50 0 0 chr1 39460059 39460366 -203203987 + AluY SINE Alu 1 307 0 1915 104 0 31 chr1 39460377 39460702 -203203651 + AluSg1 SINE Alu 1 316 0 889 142 6 41 chr1 39460702 39460852 -203203501 + AluSg/x SINE Alu 133 278 -32 1694 71 0 0 chr1 39460852 39461064 -203203289 - AluSc SINE Alu -19 290 79 889 142 6 41 chr1 39461064 39461082 -203203271 + AluSg/x SINE Alu 278 295 -15 2021 130 0 0 chr1 39461090 39461383 -203202970 + AluSx SINE Alu 1 293 -19 1031 146 19 63 chr1 39461445 39461554 -203202799 - MER2 DNA MER2_type -147 198 101 2398 82 0 0 chr1 39461554 39461860 -203202493 - AluSx SINE Alu -5 307 2 1031 146 19 63 chr1 39461860 39461955 -203202398 - MER2 DNA MER2_type -244 101 3 1971 118 0 3 chr1 39461974 39462271 -203202082 - AluSx SINE Alu -16 296 1 989 206 28 80 chr1 39462275 39462322 -203202031 - MER97b DNA MER1_type? -782 271 223 2066 120 3 0 chr1 39462322 39462614 -203201739 + AluSx SINE Alu 3 295 -17 1850 146 3 7 chr1 39462618 39462920 -203201433 + AluJb SINE Alu 1 301 -11 989 206 28 80 chr1 39462920 39463153 -203201200 - MER97b DNA MER1_type? -833 220 1 648 221 0 8 chr1 39463340 39463462 -203200891 + FLAM_A SINE Alu 1 121 -12 2282 69 10 7 chr1 39463539 39463830 -203200523 - AluSp SINE Alu -15 298 7 1368 179 24 16 chr1 39463906 39464157 -203200196 + AluJb SINE Alu 1 253 -59 382 289 29 0 chr1 39464378 39464482 -203199871 - MIR SINE MIR -61 147 41 1913 129 0 17 chr1 39465191 39465485 -203198868 + AluJo SINE Alu 13 301 -11 1778 150 0 46 chr1 39465487 39465814 -203198539 + AluJb SINE Alu 1 312 0 493 317 169 12 chr1 39465861 39466180 -203198173 + L2 LINE L2 2597 2965 -349 1775 111 3 89 chr1 39466201 39466382 -203197971 - AluSg SINE Alu -22 288 144 2501 58 0 3 chr1 39466382 39466693 -203197660 - AluY SINE Alu -1 310 1 1775 111 3 89 chr1 39466693 39466826 -203197527 - AluSg SINE Alu -166 144 1 1780 149 3 7 chr1 39466862 39467150 -203197203 - AluJb SINE Alu -16 296 10 368 228 56 62 chr1 39467150 39467312 -203197041 + L2 LINE L2 3142 3302 -11 1646 166 0 67 chr1 39467319 39467503 -203196850 - AluJb SINE Alu -2 310 115 207 100 0 0 chr1 39467503 39467533 -203196820 + (TA)n Simple_repeat Simple_repeat 2 31 0 2111 74 14 0 chr1 39467535 39467818 -203196535 - AluY SINE Alu -24 287 1 2273 77 0 0 chr1 39467823 39468121 -203196232 - AluY SINE Alu -13 298 1 1646 166 0 67 chr1 39468121 39468258 -203196095 - AluJb SINE Alu -202 110 2 498 310 28 86 chr1 39468307 39468466 -203195887 + L2 LINE L2 2551 2718 -596 1999 98 0 44 chr1 39468466 39469073 -203195280 + AluSx SINE Alu 4 285 -27 2459 54 0 19 chr1 39468599 39469073 -203195280 + AluY SINE Alu 1 492 0 184 42 0 0 chr1 39469073 39469097 -203195256 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 498 310 28 86 chr1 39469097 39469226 -203195127 + L2 LINE L2 2716 2823 -491 183 259 111 0 chr1 39469255 39469309 -203195044 - L2 LINE L2 0 3272 3213 197 304 165 41 chr1 39469962 39470156 -203194197 + L2 LINE L2 2809 3026 -246 2284 97 0 3 chr1 39470160 39470460 -203193893 - AluSg SINE Alu -11 299 1 2453 57 0 0 chr1 39470473 39470771 -203193582 - AluY SINE Alu -13 298 1 1823 154 0 4 chr1 39470773 39471053 -203193300 - AluJb SINE Alu -18 294 16 749 207 6 30 chr1 39471054 39471223 -203193130 - MLT1F LTR MaLR -377 165 1 2081 88 3 3 chr1 39471242 39471527 -203192826 + AluY SINE Alu 10 294 -17 590 244 65 79 chr1 39471529 39471808 -203192545 - MLT1L LTR MaLR -340 275 1 474 272 48 0 chr1 39471808 39471933 -203192420 + L2 LINE L2 3183 3313 0 216 329 0 0 chr1 39473285 39473358 -203190995 + G-rich Low_complexity Low_complexity 5 77 0 26 64 0 0 chr1 39474049 39474096 -203190257 + GC_rich Low_complexity Low_complexity 1 47 0 216 232 0 37 chr1 39474113 39474195 -203190158 + CT-rich Low_complexity Low_complexity 1 79 0 256 396 49 37 chr1 39475108 39475353 -203189000 + L2 LINE L2 3026 3273 -40 757 169 34 27 chr1 39475374 39475545 -203188808 - FRAM SINE Alu 0 172 1 348 277 12 0 chr1 39475547 39475630 -203188723 - L2 LINE L2 -9 3304 3221 202 62 62 0 chr1 39475630 39475662 -203188691 + A-rich Low_complexity Low_complexity 3 36 0 1860 135 7 23 chr1 39475666 39475970 -203188383 + AluJb SINE Alu 1 299 -13 198 191 0 0 chr1 39476174 39476221 -203188132 + CT-rich Low_complexity Low_complexity 3 49 0 665 259 104 45 chr1 39478652 39478872 -203185481 - MIR SINE MIR -2 260 28 458 211 240 39 chr1 39480759 39480963 -203183390 + MIR SINE MIR 10 254 -8 2400 82 0 3 chr1 39480963 39481267 -203183086 - AluSp SINE Alu -6 307 5 697 355 100 0 chr1 39482038 39482399 -203181954 - L2 LINE L2 0 3272 2876 207 0 0 0 chr1 39482850 39482873 -203181480 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 770 168 0 23 chr1 39482931 39483062 -203181291 - FLAM_A SINE Alu -2 140 13 211 167 0 0 chr1 39483069 39483105 -203181248 + MIR SINE MIR 117 152 -110 2413 55 0 23 chr1 39483345 39483654 -203180699 - AluY SINE Alu -9 302 1 2278 101 0 0 chr1 39483654 39483951 -203180402 - AluSx SINE Alu -15 297 1 332 294 113 62 chr1 39483951 39484145 -203180208 - MIR SINE MIR -57 205 2 418 297 39 71 chr1 39484491 39484609 -203179744 - MIR SINE MIR -79 183 72 2373 74 0 0 chr1 39484609 39484906 -203179447 - AluSc SINE Alu -12 297 1 418 297 39 71 chr1 39484906 39484969 -203179384 - MIR SINE MIR -190 72 8 3351 239 119 35 chr1 39485440 39486232 -203178121 + L2 LINE L2 1842 2751 -562 2299 80 0 0 chr1 39486232 39486531 -203177822 + AluY SINE Alu 1 299 -12 3351 239 119 35 chr1 39486531 39486889 -203177464 + L2 LINE L2 2751 3077 -236 2176 100 7 3 chr1 39486891 39487191 -203177162 + AluSx SINE Alu 1 301 -11 820 151 0 0 chr1 39487209 39487328 -203177025 + FLAM_C SINE Alu 6 124 -19 591 184 0 0 chr1 39487367 39487470 -203176883 + FRAM SINE Alu 74 176 0 26 0 0 0 chr1 39487472 39487498 -203176855 + AT_rich Low_complexity Low_complexity 1 26 0 1760 182 3 0 chr1 39487498 39487805 -203176548 + AluJo SINE Alu 1 308 -4 514 217 217 11 chr1 39487846 39488026 -203176327 + L2 LINE L2 3097 3313 0 714 299 112 31 chr1 39488057 39488709 -203175644 + L2 LINE L2 2591 3308 -5 1934 143 13 0 chr1 39488797 39489105 -203175248 + AluJb SINE Alu 1 312 0 270 326 54 48 chr1 39489923 39490070 -203174283 + L2 LINE L2 3122 3269 -3 233 191 0 0 chr1 39490073 39490115 -203174238 + (TGGG)n Simple_repeat Simple_repeat 1 42 0 494 314 126 5 chr1 39490272 39490463 -203173890 - MIR SINE MIR -48 214 1 411 21 0 0 chr1 39491008 39491056 -203173297 + (CA)n Simple_repeat Simple_repeat 1 48 0 754 233 61 0 chr1 39491309 39491489 -203172864 - MIR SINE MIR -34 228 38 1045 246 42 4 chr1 39492227 39492467 -203171886 + MIR SINE MIR 1 249 -13 321 389 122 4 chr1 39493086 39493348 -203171005 + L2 LINE L2 2972 3264 -8 2118 92 0 3 chr1 39493564 39493884 -203170469 + AluSg SINE Alu 1 319 0 694 313 52 0 chr1 39493886 39494119 -203170234 - MIR SINE MIR -3 259 15 449 323 30 25 chr1 39494249 39494450 -203169903 - MIR SINE MIR -57 205 4 181 81 27 27 chr1 39495862 39495899 -203168454 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr1 39496535 39496555 -203167798 + (CGG)n Simple_repeat Simple_repeat 3 22 0 198 0 0 0 chr1 39496589 39496611 -203167742 + (CCCGG)n Simple_repeat Simple_repeat 5 26 0 36 77 0 0 chr1 39496837 39496915 -203167438 + GC_rich Low_complexity Low_complexity 1 78 0 541 292 12 36 chr1 39498084 39498252 -203166101 + MIR SINE MIR 85 248 -14 189 0 0 0 chr1 39498555 39498576 -203165777 + (TGGA)n Simple_repeat Simple_repeat 3 23 0 1920 135 7 0 chr1 39498617 39498928 -203165425 + AluSx SINE Alu 1 313 0 997 186 57 38 chr1 39499162 39499372 -203164981 + MER20 DNA MER1_type 5 218 -1 1989 134 20 3 chr1 39499970 39500276 -203164077 + AluJb SINE Alu 1 311 -1 2179 88 6 31 chr1 39500309 39500629 -203163724 + AluSx SINE Alu 1 312 0 871 204 0 12 chr1 39501286 39501473 -203162880 - AluJ SINE Alu 0 304 120 243 170 19 0 chr1 39501487 39501540 -203162813 - MER41A LTR ERV1 -101 453 400 803 141 0 8 chr1 39501551 39501679 -203162674 - AluJ SINE Alu -185 127 1 208 250 200 12 chr1 39502702 39502782 -203161571 - MIR SINE MIR -148 114 20 221 180 60 0 chr1 39502943 39502993 -203161360 + L2 LINE L2 3256 3308 -5 411 298 169 27 chr1 39503840 39504065 -203160288 - MIR SINE MIR -3 259 3 2100 94 14 0 chr1 39504330 39504607 -203159746 - AluSx SINE Alu -31 281 1 985 97 8 0 chr1 39504607 39504741 -203159612 - AluSq/x SINE Alu -177 135 1 220 195 49 49 chr1 39504794 39504876 -203159477 + MIR SINE MIR 87 168 -94 302 319 42 24 chr1 39505125 39505291 -203159062 + L2 LINE L2 2958 3126 -187 1207 171 8 41 chr1 39505300 39505545 -203158808 - AluJb SINE Alu -52 260 24 1713 128 106 4 chr1 39505578 39505851 -203158502 - AluSx SINE Alu -11 301 1 459 145 12 0 chr1 39505867 39505950 -203158403 - MER51A LTR ERV1 -81 553 470 381 311 59 22 chr1 39506011 39506146 -203158207 - L2 LINE L2 -5 3267 3128 571 245 4 137 chr1 39506213 39506336 -203158017 + MIR SINE MIR 43 181 -81 2217 73 42 0 chr1 39506336 39506625 -203157728 + AluY SINE Alu 1 301 -10 1572 101 9 0 chr1 39506625 39506842 -203157511 + AluSc SINE Alu 83 301 -8 2453 46 0 16 chr1 39506842 39507146 -203157207 + AluY SINE Alu 1 299 -12 571 245 4 137 chr1 39507146 39507261 -203157092 + MIR SINE MIR 178 251 -11 2280 81 0 26 chr1 39507591 39507901 -203156452 + AluY SINE Alu 1 302 -9 310 343 6 67 chr1 39508089 39508267 -203156086 - MIR SINE MIR -50 212 46 1655 178 0 31 chr1 39508270 39508557 -203155796 - AluJb SINE Alu -34 278 1 2097 88 0 0 chr1 39508610 39508883 -203155470 - AluSq SINE Alu -9 304 32 370 331 44 28 chr1 39508952 39509133 -203155220 - MIR SINE MIR 0 262 79 211 131 0 167 chr1 39509168 39509252 -203155101 + MIR SINE MIR 114 183 -79 673 291 119 42 chr1 39509389 39509778 -203154575 + L2 LINE L2 2778 3192 -121 1688 192 3 10 chr1 39509860 39510172 -203154181 - AluJb SINE Alu -2 310 1 359 195 20 105 chr1 39510899 39510933 -203153420 + MIR SINE MIR 67 102 -160 2435 71 0 3 chr1 39510933 39511242 -203153111 - AluSc SINE Alu -1 308 1 359 195 20 105 chr1 39511242 39511366 -203152987 + MIR SINE MIR 102 210 -52 2167 94 7 7 chr1 39511748 39512045 -203152308 - AluY SINE Alu -14 297 1 453 233 74 107 chr1 39513432 39513464 -203150889 + MIR SINE MIR 2 34 -228 2243 104 0 0 chr1 39513464 39513763 -203150590 + AluSg1 SINE Alu 1 299 -10 453 233 74 107 chr1 39513763 39513853 -203150500 + MIR SINE MIR 34 125 -137 2384 88 0 16 chr1 39513853 39514170 -203150183 - AluSp SINE Alu 0 313 2 453 233 74 107 chr1 39514170 39514316 -203150037 + MIR SINE MIR 125 262 0 277 279 311 5 chr1 39516669 39516859 -203147494 - MIR SINE MIR -13 249 2 311 262 252 56 chr1 39519239 39519453 -203144900 - MIR SINE MIR -3 259 4 2274 85 0 47 chr1 39519529 39519706 -203144647 - AluSx SINE Alu -8 304 147 2156 122 0 22 chr1 39519706 39520017 -203144336 - AluSg SINE Alu -6 304 1 2274 85 0 47 chr1 39520017 39520158 -203144195 - AluSx SINE Alu -165 147 1 2078 115 14 4 chr1 39520161 39520461 -203143892 - AluSg1 SINE Alu 0 303 1 586 278 89 6 chr1 39520598 39520811 -203143542 + MIR SINE MIR 31 262 0 375 243 39 29 chr1 39520888 39520991 -203143362 + L2 LINE L2 3157 3260 -12 2196 119 0 0 chr1 39520991 39521300 -203143053 + AluSp SINE Alu 1 309 0 1360 151 171 0 chr1 39521310 39521568 -203142785 - AluJb SINE Alu 0 302 1 529 231 168 0 chr1 39521650 39521793 -203142560 - MER45A DNA AcHobo -11 167 1 2216 127 0 0 chr1 39522624 39522924 -203141429 - AluSx SINE Alu -12 300 1 234 163 12 47 chr1 39522926 39523012 -203141341 + (TTA)n Simple_repeat Simple_repeat 3 85 0 945 191 0 0 chr1 39523014 39523166 -203141187 - FRAM SINE Alu -24 152 1 198 0 0 0 chr1 39523166 39523188 -203141165 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2322 65 14 0 chr1 39523188 39523467 -203140886 - AluSp SINE Alu -30 283 1 2392 82 3 0 chr1 39523477 39523770 -203140583 - AluSc SINE Alu -1 308 15 1004 233 9 18 chr1 39523822 39524041 -203140312 + MIR SINE MIR 36 252 -10 366 314 58 7 chr1 39524061 39524198 -203140155 - MIR SINE MIR -111 151 8 337 247 28 48 chr1 39524291 39524436 -203139917 - MIR3 SINE MIR -22 186 45 646 222 142 0 chr1 39525061 39525237 -203139116 - MIR SINE MIR -50 212 12 183 152 0 0 chr1 39525728 39525774 -203138579 + (CA)n Simple_repeat Simple_repeat 2 47 0 2585 80 0 0 chr1 39526237 39526548 -203137805 - AluY SINE Alu 0 311 1 2141 125 10 7 chr1 39526626 39526923 -203137430 + AluSx SINE Alu 1 298 -14 2208 115 3 10 chr1 39527189 39527503 -203136850 - AluSx SINE Alu 0 312 1 2317 71 3 14 chr1 39527514 39527836 -203136517 - AluY SINE Alu 0 311 1 1713 171 7 17 chr1 39527992 39528291 -203136062 - AluJo SINE Alu -16 296 1 2513 62 3 10 chr1 39528314 39528619 -203135734 - AluY SINE Alu -8 303 1 645 312 87 21 chr1 39528654 39528987 -203135366 - L1 LINE L1 -1724 4422 4068 2081 131 0 10 chr1 39528995 39529286 -203135067 - AluSg SINE Alu 0 310 23 1715 131 13 0 chr1 39529387 39529624 -203134729 - AluSx SINE Alu -72 240 1 389 121 0 0 chr1 39529624 39529690 -203134663 + L1MB3 LINE L1 6094 6159 -24 659 270 88 22 chr1 39530308 39530534 -203133819 - MIR SINE MIR -3 259 19 2143 132 7 0 chr1 39530693 39531003 -203133350 - AluSq SINE Alu -1 312 1 4351 171 68 21 chr1 39531063 39531205 -203133148 - Cheshire DNA MER1_type -1 2419 2285 1697 151 22 7 chr1 39531205 39531483 -203132870 + AluSx SINE Alu 1 282 -30 426 101 0 0 chr1 39531488 39531557 -203132796 + (TA)n Simple_repeat Simple_repeat 1 69 0 4351 171 68 21 chr1 39531557 39532171 -203132182 - Cheshire DNA MER1_type -138 2282 1598 1583 203 3 39 chr1 39532171 39532481 -203131872 - AluJo SINE Alu -13 299 1 4351 171 68 21 chr1 39532481 39532706 -203131647 - Cheshire DNA MER1_type -822 1598 1385 275 106 85 0 chr1 39532709 39532756 -203131597 + Alu SINE Alu 242 292 -10 332 191 0 22 chr1 39532776 39532865 -203131488 - Cheshire DNA MER1_type -1185 1235 1149 * 1604 211 103 80 chr1 39532841 39533463 -203130890 - Cheshire DNA MER1_type -1781 639 4 731 154 15 0 chr1 39533924 39534054 -203130299 + AluSq/x SINE Alu 2 133 -180 2322 112 0 13 chr1 39534063 39534375 -203129978 + AluSx SINE Alu 1 308 -4 818 231 6 6 chr1 39534588 39534757 -203129596 - AluJb SINE Alu -7 305 137 2509 52 0 0 chr1 39534765 39535101 -203129252 - AluY SINE Alu 0 336 1 551 252 211 68 chr1 39535103 39535376 -203128977 + L2 LINE L2 2605 2837 -476 2356 81 0 7 chr1 39535376 39535673 -203128680 - AluSp SINE Alu -18 295 1 551 252 211 68 chr1 39535673 39535996 -203128357 + L2 LINE L2 2837 3312 -1 2318 102 0 0 chr1 39536420 39536715 -203127638 - AluSg SINE Alu -15 295 1 1672 162 56 3 chr1 39536992 39537276 -203127077 - AluJo SINE Alu 0 312 14 2478 70 3 0 chr1 39537281 39537583 -203126770 - AluY SINE Alu -4 307 5 284 294 56 0 chr1 39537618 39537744 -203126609 - L1M4 LINE L1 -1006 5140 5008 540 191 53 38 chr1 39537784 39537915 -203126438 + FLAM_C SINE Alu 1 133 0 213 39 0 0 chr1 39537984 39538010 -203126343 + (T)n Simple_repeat Simple_repeat 1 26 0 6047 42 0 1 chr1 39538034 39538708 -203125645 - SVA Other Other -1 1385 713 7215 158 17 16 chr1 39538808 39539326 -203125027 - HERVFH21 LTR ERV1 -1468 5061 4545 2450 77 0 0 chr1 39539326 39539624 -203124729 + AluY SINE Alu 1 298 -13 7215 158 17 16 chr1 39539624 39541231 -203123122 - HERVFH21 LTR ERV1 -1984 4545 2868 3168 232 25 19 chr1 39541227 39542464 -203121889 - HERVFH21 LTR ERV1 -4686 900 74 * 1313 170 146 88 chr1 39542505 39542916 -203121437 - LTR21B LTR ERV1 -3 435 1 562 256 164 26 chr1 39542916 39543185 -203121168 + L2 LINE L2 2935 3240 -73 836 222 46 0 chr1 39543296 39543490 -203120863 + MER20B DNA MER1_type 219 421 -362 377 209 80 49 chr1 39543561 39543724 -203120629 + MER20B DNA MER1_type 610 777 -6 265 325 134 19 chr1 39543750 39543959 -203120394 + MIR SINE MIR 13 245 -17 2036 158 0 16 chr1 39543972 39544288 -203120065 - AluJb SINE Alu -1 311 1 280 281 35 26 chr1 39544671 39544785 -203119568 + (CAGG)n Simple_repeat Simple_repeat 1 115 0 669 286 231 18 chr1 39545692 39546247 -203118106 + L2 LINE L2 2132 2568 -745 2439 93 6 0 chr1 39546247 39546558 -203117795 + AluSp SINE Alu 1 313 0 669 286 231 18 chr1 39546558 39546916 -203117437 + L2 LINE L2 2568 3251 -62 2581 74 0 0 chr1 39546933 39547243 -203117110 + AluY SINE Alu 1 310 -1 1510 163 25 50 chr1 39547245 39547446 -203116907 + MER2 DNA MER2_type 6 198 -147 1872 138 35 17 chr1 39547446 39547735 -203116618 + AluJb SINE Alu 1 294 -18 1510 163 25 50 chr1 39547735 39547853 -203116500 + MER2 DNA MER2_type 198 317 -28 273 273 40 20 chr1 39548793 39548892 -203115461 + MIR SINE MIR 91 191 -71 24 32 0 0 chr1 39549587 39549618 -203114735 + GC_rich Low_complexity Low_complexity 1 31 0 1202 63 0 32 chr1 39553254 39553274 -203111079 - AluSx SINE Alu -159 153 134 2086 68 46 21 chr1 39553274 39553605 -203110748 - AluY SINE Alu 0 311 1 1202 63 0 32 chr1 39553605 39553742 -203110611 - AluSx SINE Alu -178 134 1 1318 268 83 27 chr1 39553746 39554273 -203110080 + L2 LINE L2 2142 2698 -616 234 327 103 6 chr1 39554267 39554367 -203109986 - L2 LINE L2 -108 3205 3116 * 2368 99 0 3 chr1 39554367 39554671 -203109682 + AluSq SINE Alu 1 303 -10 234 327 103 6 chr1 39554671 39554735 -203109618 - L2 LINE L2 -197 3116 3025 775 289 47 17 chr1 39554871 39555106 -203109247 + MIR SINE MIR 11 252 -10 277 132 0 0 chr1 39555256 39555294 -203109059 + Alu SINE Alu 1 38 -263 1041 107 6 85 chr1 39555298 39555475 -203108878 + AluSp SINE Alu 147 309 -4 432 316 70 39 chr1 39555637 39555695 -203108658 + L1MEd LINE L1 563 618 -5501 2356 95 0 0 chr1 39555695 39556013 -203108340 + AluSx SINE Alu 1 312 0 432 316 70 39 chr1 39556013 39556311 -203108042 + L1MEd LINE L1 618 930 -5189 2426 83 0 10 chr1 39556581 39556883 -203107470 + AluSq SINE Alu 1 299 -14 634 244 0 31 chr1 39556941 39557101 -203107252 + FRAM SINE Alu 2 156 -20 2285 117 0 7 chr1 39557410 39557709 -203106644 - AluSx SINE Alu -15 297 1 2265 87 0 10 chr1 39558423 39558756 -203105597 + AluSq SINE Alu 1 330 0 875 179 11 39 chr1 39559253 39559432 -203104921 - AluJb SINE Alu -2 310 137 2231 133 3 0 chr1 39559432 39559733 -203104620 - AluSx SINE Alu -8 304 3 1205 75 0 48 chr1 39559760 39559946 -203104407 + L1PA8 LINE L1 5989 6165 -7 198 0 0 0 chr1 39560125 39560147 -203104206 + (A)n Simple_repeat Simple_repeat 1 22 0 665 119 8 8 chr1 39560344 39560462 -203103891 + L1MC3 LINE L1 7597 7714 -71 971 186 192 48 chr1 39560462 39560796 -203103557 + MLT1B LTR MaLR 1 382 -8 224 254 333 30 chr1 39561138 39561303 -203103050 + MIR SINE MIR 23 237 -25 915 78 0 0 chr1 39561435 39561550 -203102803 + AluY SINE Alu 188 302 -9 1983 140 35 0 chr1 39562209 39562495 -203101858 + AluJb SINE Alu 3 298 -14 2263 78 3 56 chr1 39562497 39562845 -203101508 + AluY SINE Alu 1 331 0 1020 213 85 0 chr1 39563315 39563587 -203100766 + MER33 DNA MER1_type 30 324 0 2572 62 0 3 chr1 39564048 39564356 -203099997 - AluY SINE Alu -4 307 1 997 111 7 0 chr1 39564356 39564491 -203099862 - AluSq/x SINE Alu -176 136 1 688 286 100 24 chr1 39564492 39564767 -203099586 + HAL1 LINE L1 1914 2167 -340 2580 54 3 0 chr1 39564767 39565065 -203099288 - AluY SINE Alu -12 299 1 688 286 100 24 chr1 39565065 39565289 -203099064 + HAL1 LINE L1 2167 2451 -56 2223 125 3 0 chr1 39565343 39565646 -203098707 - AluSx SINE Alu -8 304 1 1531 147 9 4 chr1 39565815 39566047 -203098306 - AluJo SINE Alu -2 310 78 2257 101 0 14 chr1 39566831 39567127 -203097226 + AluY SINE Alu 4 295 -16 2350 92 0 0 chr1 39567468 39567763 -203096590 + AluSg SINE Alu 1 295 -15 551 252 211 68 chr1 39568187 39568510 -203095843 - L2 LINE L2 -1 3312 3037 2356 81 0 7 chr1 39568510 39568807 -203095546 + AluSp SINE Alu 1 295 -18 551 252 211 68 chr1 39568807 39569080 -203095273 - L2 LINE L2 -276 3037 2605 2471 79 0 0 chr1 39569082 39569386 -203094967 + AluY SINE Alu 1 304 -7 2184 81 21 0 chr1 39569386 39569669 -203094684 + AluY SINE Alu 1 290 -21 1221 155 0 5 chr1 39569696 39569883 -203094470 + AluJb SINE Alu 125 310 -2 386 253 50 10 chr1 39569890 39569989 -203094364 - L2 LINE L2 -11 3302 3200 1182 186 35 4 chr1 39570381 39570612 -203093741 + AluSx SINE Alu 60 297 -15 547 164 52 9 chr1 39570614 39570730 -203093623 - L1ME1 LINE L1 -53 6113 5993 275 279 196 39 chr1 39570860 39571089 -203093264 - L2 LINE L2 -16 3297 3033 2097 133 7 7 chr1 39571265 39571559 -203092794 - AluSx SINE Alu -18 294 1 610 270 156 0 chr1 39572510 39572721 -203091632 - Charlie8 DNA MER1_type -2141 276 33 2190 98 0 41 chr1 39572929 39573074 -203091279 + AluSx SINE Alu 1 150 -162 2422 71 14 0 chr1 39573074 39573370 -203090983 + AluSp SINE Alu 1 300 -13 2190 98 0 41 chr1 39573370 39573540 -203090813 + AluSx SINE Alu 150 303 -9 2260 99 3 0 chr1 39573540 39573858 -203090495 + AluSp SINE Alu 1 319 0 258 56 0 0 chr1 39574055 39574091 -203090262 + (A)n Simple_repeat Simple_repeat 1 36 0 2171 111 3 3 chr1 39574096 39574393 -203089960 + AluY SINE Alu 1 297 -14 989 175 0 12 chr1 39574480 39574651 -203089702 - AluJo SINE Alu -17 295 127 2121 120 7 16 chr1 39574838 39574974 -203089379 + AluSx SINE Alu 1 137 -175 1995 148 10 13 chr1 39574974 39575278 -203089075 + AluSq SINE Alu 1 303 -10 2121 120 7 16 chr1 39575278 39575450 -203088903 + AluSx SINE Alu 137 306 -6 1183 102 0 0 chr1 39575453 39575610 -203088743 + AluSg/x SINE Alu 135 291 -19 410 218 0 0 chr1 39575634 39575712 -203088641 - AluJ/FRAM SINE Alu -18 294 217 2295 88 7 3 chr1 39575910 39576205 -203088148 + AluSp SINE Alu 1 296 -17 403 318 186 40 chr1 39576305 39576729 -203087624 + L2 LINE L2 2824 3309 -4 2332 99 3 0 chr1 39576934 39577237 -203087116 + AluSx SINE Alu 1 304 -8 529 304 58 12 chr1 39577961 39578132 -203086221 - MIR SINE MIR -48 214 36 317 312 47 24 chr1 39579428 39579598 -203084755 + MIR SINE MIR 35 208 -54 290 276 112 45 chr1 39579741 39579875 -203084478 + MER5A DNA MER1_type 47 189 0 234 0 0 0 chr1 39580344 39580370 -203083983 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1814 133 8 0 chr1 39580372 39580635 -203083718 - AluSx SINE Alu -36 276 12 230 367 0 13 chr1 39580662 39580741 -203083612 - L2 LINE L2 -14 3258 3181 2354 90 0 7 chr1 39580785 39581095 -203083258 + AluSx SINE Alu 1 308 -4 749 148 133 41 chr1 39581097 39581293 -203083060 - Tigger1 DNA MER2_type 0 2418 2205 608 106 24 0 chr1 39581296 39581381 -203082972 + AluSp SINE Alu 1 87 -226 2370 89 0 7 chr1 39581382 39581684 -203082669 + AluSq SINE Alu 1 300 -13 1648 88 9 9 chr1 39581684 39581899 -203082454 + AluSp SINE Alu 76 291 -22 1650 118 16 141 chr1 39581904 39582287 -203082066 - Tigger1 DNA MER2_type -219 2199 1865 1407 168 7 69 chr1 39582287 39582494 -203081859 - AluJb SINE Alu -10 302 84 243 0 0 0 chr1 39582494 39582521 -203081832 + (TA)n Simple_repeat Simple_repeat 2 28 0 2119 123 7 7 chr1 39582521 39582822 -203081531 - AluSx SINE Alu -11 301 1 1407 168 7 69 chr1 39582822 39582904 -203081449 - AluJb SINE Alu -226 86 30 702 146 0 0 chr1 39583003 39583099 -203081254 - AluS SINE Alu -215 97 2 627 120 30 0 chr1 39583100 39583200 -203081153 - Tigger1 DNA MER2_type -938 1480 1378 1997 146 7 3 chr1 39583201 39583495 -203080858 + AluSx SINE Alu 1 295 -17 6897 127 26 41 chr1 39583495 39583765 -203080588 - Tigger1 DNA MER2_type -1186 1232 960 2074 128 3 16 chr1 39583765 39584077 -203080276 + AluSx SINE Alu 1 308 -4 6897 127 26 41 chr1 39584077 39584438 -203079915 - Tigger1 DNA MER2_type -1458 960 595 2241 121 0 0 chr1 39584438 39584736 -203079617 - AluSg SINE Alu -12 298 1 6897 127 26 41 chr1 39584736 39584747 -203079606 - Tigger1 DNA MER2_type -1823 595 585 2381 75 0 23 chr1 39584747 39585055 -203079298 - AluY SINE Alu -10 301 1 2019 82 0 141 chr1 39585055 39585408 -203078945 - AluSx SINE Alu -8 304 1 6897 127 26 41 chr1 39585408 39585987 -203078366 - Tigger1 DNA MER2_type -1831 587 26 184 378 27 45 chr1 39586277 39586388 -203077965 + L2 LINE L2 3077 3185 -87 400 290 65 32 chr1 39586390 39586576 -203077777 - L2 LINE L2 -5 3308 3117 330 200 0 0 chr1 39586606 39586666 -203077687 + MER58 DNA MER1_type 1 60 -155 1520 162 72 14 chr1 39586682 39586972 -203077381 - AluSg SINE Alu -2 308 2 2002 92 85 0 chr1 39586973 39587255 -203077098 - AluSx SINE Alu -6 306 1 915 164 0 0 chr1 39587256 39587396 -203076957 - FLAM_C SINE Alu -3 140 1 608 176 146 46 chr1 39587445 39587706 -203076647 + AluSp SINE Alu 2 288 -25 1467 143 9 0 chr1 39587872 39588089 -203076264 + AluSg/x SINE Alu 82 300 -10 1689 102 102 33 chr1 39588089 39588313 -203076040 + MER46B DNA MER2_type 34 161 -2570 1795 104 123 11 chr1 39588313 39588581 -203075772 - AluSg SINE Alu -11 299 2 1689 102 102 33 chr1 39588581 39588661 -203075692 + MER46B DNA MER2_type 161 234 -2 341 47 0 0 chr1 39588979 39589022 -203075331 - L1PA16 LINE L1 -9 6157 6115 1343 169 37 7 chr1 39590955 39591228 -203073125 + AluSq SINE Alu 21 301 -12 1782 150 0 24 chr1 39591238 39591525 -203072828 + AluSq SINE Alu 14 293 -20 961 184 0 12 chr1 39591620 39591788 -203072565 + AluJb SINE Alu 137 302 -10 422 128 0 3 chr1 39591792 39592018 -203072335 + AluSq SINE Alu 1 301 -10 2342 114 0 6 chr1 39592023 39592338 -203072015 + AluSq SINE Alu 1 313 0 1296 189 59 64 chr1 39592341 39592399 -203071954 - L1M4 LINE L1 -883 5263 5206 2206 119 0 19 chr1 39592399 39592717 -203071636 - AluSx SINE Alu 0 312 1 1296 189 59 64 chr1 39592717 39592750 -203071603 - L1M4 LINE L1 -940 5206 5174 2493 74 3 0 chr1 39592750 39593048 -203071305 - AluY SINE Alu -12 299 1 1296 189 59 64 chr1 39593048 39593266 -203071087 - L1M4 LINE L1 -972 5174 4953 1842 171 11 0 chr1 39593266 39593553 -203070800 - AluJo SINE Alu -22 290 1 1296 189 59 64 chr1 39593553 39593616 -203070737 - L1M4 LINE L1 -1193 4953 4891 439 131 0 60 chr1 39593616 39593688 -203070665 + AluSp/q SINE Alu 235 310 -3 2533 74 0 0 chr1 39593688 39593985 -203070368 - AluY SINE Alu -12 299 3 2282 92 10 0 chr1 39593987 39594154 -203070199 - AluY SINE Alu -15 296 123 189 0 0 0 chr1 39594154 39594175 -203070178 + (TG)n Simple_repeat Simple_repeat 2 22 0 2282 92 10 0 chr1 39594175 39594300 -203070053 - AluY SINE Alu -188 123 1 1177 218 3 11 chr1 39594528 39594842 -203069511 + AluY SINE Alu 1 312 0 1698 181 24 11 chr1 39595063 39595350 -203069003 - AluJo SINE Alu -21 291 1 1030 144 60 74 chr1 39595350 39595453 -203068900 - L1M4 LINE L1 -681 5493 5390 2717 42 0 3 chr1 39595453 39595760 -203068593 - AluY SINE Alu -5 306 1 1030 144 60 74 chr1 39595760 39595947 -203068406 - L1M4 LINE L1 -784 5390 5223 1929 93 31 4 chr1 39595947 39596204 -203068149 - AluSg SINE Alu -11 299 36 1030 144 60 74 chr1 39596204 39596321 -203068032 - L1M4 LINE L1 -951 5223 5106 1968 120 0 4 chr1 39596505 39596772 -203067581 + AluSx SINE Alu 28 293 -19 904 106 25 75 chr1 39646805 39646817 -203017536 + FRAM SINE Alu 23 34 -278 4889 188 108 112 chr1 39646817 39648579 -203015774 - MER52A LTR ERV1 0 1755 1 904 106 25 75 chr1 39648579 39648727 -203015626 + FRAM SINE Alu 34 175 -1 749 168 23 0 chr1 39648984 39649115 -203015238 - U4 snRNA snRNA -1 144 11 180 0 0 0 chr1 39649167 39649187 -203015166 + (CA)n Simple_repeat Simple_repeat 2 21 0 2225 126 7 0 chr1 39649187 39649480 -203014873 - AluSx SINE Alu -17 295 1 402 57 0 0 chr1 39649489 39649542 -203014811 + (TA)n Simple_repeat Simple_repeat 2 54 0 349 295 23 0 chr1 39649553 39649726 -203014627 + (TA)n Simple_repeat Simple_repeat 2 178 0 25 0 0 0 chr1 39649733 39649758 -203014595 + AT_rich Low_complexity Low_complexity 1 25 0 244 310 21 0 chr1 39649809 39649951 -203014402 + (TA)n Simple_repeat Simple_repeat 1 145 0 255 291 26 7 chr1 39649974 39650017 -203014336 + (TA)n Simple_repeat Simple_repeat 1 42 -112 2303 54 0 20 chr1 39650017 39650353 -203014000 - AluY SINE Alu 0 311 1 255 291 26 7 chr1 39650353 39650460 -203013893 + (TA)n Simple_repeat Simple_repeat 42 154 0 350 174 161 76 chr1 39650460 39650684 -203013669 + Charlie1 DNA MER1_type 2519 2761 0 2495 71 3 3 chr1 39650704 39651012 -203013341 - AluY SINE Alu -3 308 1 2245 123 0 10 chr1 39651645 39651955 -203012398 - AluJb SINE Alu -5 307 1 984 209 0 0 chr1 39652054 39652231 -203012122 - AluJo/FRAM SINE Alu -2 310 134 2056 112 3 27 chr1 39652231 39652525 -203011828 - AluSp SINE Alu -26 287 1 1087 67 4 20 chr1 39652745 39653008 -203011345 + (TTCC)n Simple_repeat Simple_repeat 1 258 0 2074 112 0 0 chr1 39653022 39653290 -203011063 - AluSg1 SINE Alu -15 294 27 278 283 207 28 chr1 39653290 39653435 -203010918 + MER5A DNA MER1_type 1 171 -18 1106 129 11 51 chr1 39653616 39653794 -203010559 - AluJb SINE Alu -9 303 133 1672 155 48 24 chr1 39654077 39654367 -203009986 + AluJb SINE Alu 1 297 -15 2206 103 21 0 chr1 39654369 39654660 -203009693 + AluSg SINE Alu 2 298 -12 234 167 0 0 chr1 39654737 39654779 -203009574 + LTR67 LTR ERVL 18 59 -498 415 258 25 8 chr1 39655067 39655187 -203009166 + LTR67 LTR ERVL 436 557 0 2252 128 0 0 chr1 39655236 39655548 -203008805 - AluSx SINE Alu 0 312 1 2291 106 3 0 chr1 39655563 39655855 -203008498 - AluSg SINE Alu -17 293 1 343 337 44 33 chr1 39655906 39656087 -203008266 - L3 LINE CR1 -3 1574 1392 24 0 0 0 chr1 39656402 39656426 -203007927 + AT_rich Low_complexity Low_complexity 1 24 0 2395 122 0 0 chr1 39656433 39656745 -203007608 - AluSx SINE Alu 0 312 1 2613 59 0 0 chr1 39657234 39657539 -203006814 + AluY SINE Alu 1 305 -6 999 186 22 6 chr1 39657620 39657803 -203006550 + AluJo SINE Alu 121 306 -6 1724 148 62 22 chr1 39658072 39658526 -203005827 - MER51A LTR ERV1 -16 618 122 2333 101 0 19 chr1 39658934 39659242 -203005111 - AluSx SINE Alu -10 302 1 2242 112 0 7 chr1 39659941 39660236 -203004117 + AluSx SINE Alu 1 293 -19 1682 130 134 0 chr1 39660245 39660507 -203003846 + AluJo SINE Alu 1 297 -15 1481 155 29 7 chr1 39660554 39660935 -203003418 + LOR1a LTR ERV1 40 497 0 195 356 48 0 chr1 39661309 39661413 -203002940 - MIR SINE MIR -63 145 37 610 163 0 0 chr1 39661551 39661643 -203002710 - AluJb SINE Alu -12 300 209 2536 63 3 0 chr1 39661717 39662019 -203002334 - AluY SINE Alu -8 303 1 2425 93 3 3 chr1 39662530 39662840 -203001513 - AluSp SINE Alu -3 310 1 2280 105 0 7 chr1 39663353 39663648 -203000705 - AluY SINE Alu -18 293 1 2087 127 3 36 chr1 39665023 39665331 -202999022 + AluSx SINE Alu 1 298 -14 414 344 156 19 chr1 39665535 39665895 -202998458 + L2 LINE L2 2829 3237 -35 960 199 6 0 chr1 39666190 39666361 -202997992 - FRAM SINE Alu 0 176 5 2220 107 0 7 chr1 39666366 39666664 -202997689 - AluSg SINE Alu -14 296 1 197 280 0 0 chr1 39668020 39668070 -202996283 + L2 LINE L2 3223 3272 0 218 32 32 0 chr1 39669412 39669443 -202994910 + (TAA)n Simple_repeat Simple_repeat 1 32 0 377 250 226 18 chr1 39669443 39669607 -202994746 - MIR SINE MIR -14 248 51 2416 104 0 0 chr1 39669981 39670289 -202994064 + AluY SINE Alu 1 308 -3 1755 163 21 3 chr1 39670505 39670793 -202993560 - AluJb SINE Alu -19 293 1 472 243 105 7 chr1 39670801 39670953 -202993400 - MIR SINE MIR -68 194 28 426 261 72 14 chr1 39671019 39671157 -202993196 - MIR SINE MIR -114 148 3 300 256 129 12 chr1 39671319 39671412 -202992941 + MIR3 SINE MIR 98 203 -5 2280 125 0 0 chr1 39671443 39671754 -202992599 + AluSx SINE Alu 1 311 -1 488 263 75 66 chr1 39671822 39672005 -202992348 + MIR SINE MIR 33 220 -42 2250 116 3 3 chr1 39672005 39672307 -202992046 + AluSg SINE Alu 1 302 -8 488 263 75 66 chr1 39672307 39672351 -202992002 + MIR SINE MIR 220 262 0 207 343 32 50 chr1 39672918 39673195 -202991158 + L2 LINE L2 2134 2405 -909 182 347 21 0 chr1 39673195 39673290 -202991063 + L2 LINE L2 2561 2657 -657 2281 119 0 0 chr1 39673297 39673599 -202990754 - AluSx SINE Alu -10 302 1 2414 79 0 3 chr1 39673601 39673893 -202990460 - AluSg SINE Alu -19 291 1 1782 148 0 73 chr1 39673893 39674210 -202990143 - AluSc SINE Alu -15 294 1 26 98 0 0 chr1 39674334 39674416 -202989937 + AT_rich Low_complexity Low_complexity 1 82 0 2443 96 0 6 chr1 39674499 39674813 -202989540 + AluSx SINE Alu 1 312 0 340 240 171 8 chr1 39675098 39675227 -202989126 - MIR SINE MIR -57 205 56 2252 99 28 0 chr1 39675256 39675540 -202988813 + AluSx SINE Alu 1 292 -20 721 184 0 22 chr1 39675540 39675667 -202988686 - FLAM_A SINE Alu -176 126 1 2098 148 3 3 chr1 39675697 39676000 -202988353 + AluJo SINE Alu 1 303 -9 995 147 163 0 chr1 39676129 39676319 -202988034 - AluJb SINE Alu -5 307 87 309 153 119 0 chr1 39676347 39676406 -202987947 - AluSq SINE Alu -1 301 236 2325 70 42 0 chr1 39676406 39676690 -202987663 - AluSg SINE Alu -14 296 1 1521 177 8 0 chr1 39676691 39676934 -202987419 - AluSq SINE Alu -68 245 1 734 186 0 0 chr1 39677085 39677214 -202987139 + FLAM_C SINE Alu 5 133 0 2364 98 0 0 chr1 39677243 39677548 -202986805 - AluSx SINE Alu -7 305 1 649 209 0 0 chr1 39679303 39679432 -202984921 + MER94 DNA DNA 3 131 -3 449 275 30 33 chr1 39679470 39679674 -202984679 + MIR3 SINE MIR 2 203 -59 2547 76 3 0 chr1 39679887 39680191 -202984162 + AluSg SINE Alu 1 305 -5 353 284 57 14 chr1 39680524 39680665 -202983688 - MIR SINE MIR -34 228 82 370 242 47 47 chr1 39680901 39681029 -202983324 + MIR SINE MIR 22 149 -113 2409 68 3 3 chr1 39681093 39681385 -202982968 - AluSc SINE Alu -12 297 6 2313 57 57 0 chr1 39682032 39682313 -202982040 - AluY SINE Alu -14 297 1 415 339 80 30 chr1 39682394 39682733 -202981620 + L1MC4a LINE L1 5532 5887 -1921 285 343 93 11 chr1 39683572 39683852 -202980501 + L2 LINE L2 2383 2685 -629 1826 173 0 27 chr1 39684122 39684422 -202979931 - AluJo SINE Alu -20 292 1 2134 130 3 0 chr1 39684819 39685112 -202979241 - AluJb SINE Alu -18 294 1 518 264 169 5 chr1 39685381 39685582 -202978771 - MIR SINE MIR 0 262 29 2287 98 17 0 chr1 39685590 39685877 -202978476 - AluSp SINE Alu -21 292 1 2450 100 0 0 chr1 39686653 39686963 -202977390 - AluSx SINE Alu -2 310 1 1017 233 71 0 chr1 39687044 39687284 -202977069 - MIR SINE MIR 0 262 6 189 0 0 0 chr1 39687330 39687351 -202977002 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 24 0 0 0 chr1 39688522 39688546 -202975807 + GC_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chr1 39688616 39688646 -202975707 + GC_rich Low_complexity Low_complexity 1 30 0 374 290 9 0 chr1 39689792 39689899 -202974454 - MIR SINE MIR -123 139 32 266 278 155 10 chr1 39689894 39689991 -202974362 + MIR SINE MIR 39 149 -113 * 258 56 0 0 chr1 39690430 39690466 -202973887 + (CA)n Simple_repeat Simple_repeat 2 37 0 453 256 149 6 chr1 39690817 39690985 -202973368 + MIR SINE MIR 1 192 -70 2280 120 0 0 chr1 39690996 39691295 -202973058 + AluSq SINE Alu 1 299 -14 401 240 70 0 chr1 39691303 39691403 -202972950 - L2 LINE L2 -5 3308 3202 1950 154 7 13 chr1 39691454 39691759 -202972594 - AluJo SINE Alu -9 303 1 472 194 0 30 chr1 39691791 39691896 -202972457 + MIR3 SINE MIR 58 160 -48 225 0 0 0 chr1 39692452 39692477 -202971876 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 412 313 181 20 chr1 39692874 39693043 -202971310 + L2 LINE L2 2837 2977 -336 1493 138 51 71 chr1 39693043 39693339 -202971014 + AluJo SINE Alu 2 291 -21 412 313 181 20 chr1 39693339 39693578 -202970775 + L2 LINE L2 2977 3311 -2 222 296 75 38 chr1 39694317 39694476 -202969877 - MER5A DNA MER1_type -12 177 13 2197 134 7 0 chr1 39694642 39694947 -202969406 - AluSx SINE Alu -5 307 1 714 149 8 30 chr1 39695034 39695168 -202969185 + FLAM_C SINE Alu 1 131 -2 1927 89 0 27 chr1 39695269 39695527 -202968826 - AluSx SINE Alu -6 306 56 435 188 248 15 chr1 39695822 39695955 -202968398 + MER5B DNA MER1_type 7 170 -8 220 279 101 0 chr1 39696956 39697035 -202967318 - MIR SINE MIR -59 203 117 576 196 0 60 chr1 39697042 39697175 -202967178 + FLAM_A SINE Alu 1 125 -8 2016 80 87 18 chr1 39697185 39697461 -202966892 + AluY SINE Alu 1 295 -16 2356 100 0 3 chr1 39697484 39697783 -202966570 + AluSq SINE Alu 1 298 -15 395 280 87 106 chr1 39697788 39698063 -202966290 + L1M4 LINE L1 4056 4325 -1821 244 250 95 0 chr1 39698064 39698148 -202966205 - MIR SINE MIR -121 141 50 2250 110 10 0 chr1 39698157 39698456 -202965897 + AluSx SINE Alu 1 302 -10 374 222 95 60 chr1 39698468 39698600 -202965753 - MER5B DNA MER1_type -3 186 44 2489 67 6 16 chr1 39698600 39698914 -202965439 + AluY SINE Alu 1 311 0 374 222 95 60 chr1 39698914 39698938 -202965415 - MER5B DNA MER1_type -145 44 22 204 271 0 0 chr1 39698942 39698990 -202965363 + MER5A DNA MER1_type 50 97 -92 229 303 0 15 chr1 39699049 39699115 -202965238 + MER5A DNA MER1_type 125 189 0 876 141 54 27 chr1 39699123 39699307 -202965046 - MER5A DNA MER1_type 0 189 1 2149 112 27 0 chr1 39699352 39699648 -202964705 + AluSx SINE Alu 1 304 -8 205 325 88 18 chr1 39699692 39699806 -202964547 + MIR SINE MIR 19 140 -122 1901 108 104 0 chr1 39700605 39700873 -202963480 + AluSg1 SINE Alu 1 296 -13 336 195 37 0 chr1 39701020 39701102 -202963251 - L1MC/D LINE L1 -2000 5808 5724 285 336 16 8 chr1 39701140 39701268 -202963085 - L1MC/D LINE L1 -2080 5728 5600 2384 90 0 3 chr1 39701638 39701937 -202962416 - AluSq SINE Alu -15 298 1 2395 106 0 0 chr1 39702150 39702451 -202961902 - AluSx SINE Alu -11 301 1 197 319 117 0 chr1 39702509 39702603 -202961750 - MIR SINE MIR -77 185 81 452 308 28 14 chr1 39704488 39704631 -202959722 - MIR SINE MIR -92 170 26 835 139 42 54 chr1 39705223 39705389 -202958964 - AluJo/FRAM SINE Alu -1 311 148 580 100 0 0 chr1 39705392 39705472 -202958881 - AluJ/FLAM SINE Alu -230 82 3 692 167 0 0 chr1 39705547 39705655 -202958698 - MER2 DNA MER2_type -4 341 234 2360 90 3 7 chr1 39705656 39705956 -202958397 - AluSx SINE Alu -7 305 7 512 89 0 0 chr1 39705963 39706042 -202958311 - AluJ/FRAM SINE Alu -2 310 232 2540 67 0 16 chr1 39706089 39706403 -202957950 - AluY SINE Alu -2 309 1 1198 126 49 54 chr1 39706404 39706497 -202957856 - MER2 DNA MER2_type -117 228 136 2171 114 7 7 chr1 39706497 39706795 -202957558 + AluSx SINE Alu 1 298 -14 1198 126 49 54 chr1 39706795 39706924 -202957429 - MER2 DNA MER2_type -209 136 7 242 284 51 81 chr1 39707848 39708144 -202956209 - L2 LINE L2 -31 3241 2955 1712 211 76 45 chr1 39708727 39709128 -202955225 - L1MC4 LINE L1 -159 7883 7461 1604 163 91 4 chr1 39709128 39709392 -202954961 + AluJb SINE Alu 5 291 -21 1712 211 76 45 chr1 39709392 39709503 -202954850 - L1MC4 LINE L1 -581 7461 7355 245 204 34 23 chr1 39709514 39709602 -202954751 - L1ME2 LINE L1 0 6164 6076 2305 112 0 40 chr1 39710528 39710851 -202953502 + AluSx SINE Alu 1 310 -2 1251 164 0 18 chr1 39711723 39711942 -202952411 - AluJb SINE Alu 0 312 98 753 168 0 0 chr1 39711969 39712088 -202952265 - AluJ SINE Alu -183 119 1 482 234 122 47 chr1 39712137 39712274 -202952079 - MIR SINE MIR -4 258 98 2450 70 7 3 chr1 39712274 39712573 -202951780 - AluSq SINE Alu -13 300 1 482 234 122 47 chr1 39712573 39712649 -202951704 - MIR SINE MIR -164 98 29 2569 52 0 23 chr1 39712746 39713051 -202951302 - AluY SINE Alu -13 298 1 903 186 233 13 chr1 39713058 39713294 -202951059 - AluJo SINE Alu -12 290 3 2906 169 50 3 chr1 39713326 39713905 -202950448 - L1MC3 LINE L1 -144 7641 7036 249 33 0 0 chr1 39713910 39713940 -202950413 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2172 134 7 0 chr1 39714149 39714454 -202949899 - AluSx SINE Alu -1 311 5 1905 151 3 49 chr1 39714536 39714677 -202949676 + AluJo SINE Alu 3 149 -163 2558 72 3 0 chr1 39714677 39714983 -202949370 + AluSp SINE Alu 1 307 -6 1905 151 3 49 chr1 39714983 39715166 -202949187 + AluJo SINE Alu 149 312 0 195 309 15 15 chr1 39715208 39715276 -202949077 + MIR3 SINE MIR 140 207 -1 1848 140 65 7 chr1 39715880 39716173 -202948180 + AluJo SINE Alu 1 310 -2 24 32 0 0 chr1 39716203 39716234 -202948119 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 39718085 39718106 -202946247 + AT_rich Low_complexity Low_complexity 1 21 0 2444 43 7 16 chr1 39718111 39718414 -202945939 + AluY SINE Alu 4 303 -8 2495 64 7 0 chr1 39718587 39718882 -202945471 + AluSp SINE Alu 1 297 -16 437 245 54 126 chr1 39719336 39719597 -202944756 - MIR SINE MIR -3 259 18 2275 105 0 0 chr1 39719598 39719905 -202944448 - AluSx SINE Alu 0 307 1 195 42 0 0 chr1 39721098 39721122 -202943231 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 529 236 133 7 chr1 39721365 39721540 -202942813 + MIR SINE MIR 21 214 -48 2074 132 40 0 chr1 39721709 39722005 -202942348 + AluSx SINE Alu 1 308 -4 253 0 0 0 chr1 39722344 39722372 -202941981 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 2248 92 7 0 chr1 39722372 39722654 -202941699 - AluSx SINE Alu -1 311 1 2327 102 0 0 chr1 39722659 39722964 -202941389 - AluSx SINE Alu -7 305 1 242 268 0 0 chr1 39723400 39723456 -202940897 + MIR SINE MIR 91 146 -62 594 253 170 16 chr1 39724190 39724384 -202939969 + MIR SINE MIR 22 245 -17 185 222 37 56 chr1 39724492 39724546 -202939807 + L2 LINE L2 3261 3313 0 451 309 77 10 chr1 39724694 39724901 -202939452 - MIR SINE MIR -41 221 1 186 314 12 47 chr1 39725063 39725149 -202939204 - L2 LINE L2 -9 3304 3222 306 301 49 35 chr1 39725427 39725630 -202938723 - L2 LINE L2 -452 2862 2657 2424 97 3 0 chr1 39726196 39726507 -202937846 + AluSx SINE Alu 1 312 0 349 257 169 6 chr1 39727398 39727573 -202936780 + MIR SINE MIR 3 207 -55 2605 62 3 0 chr1 39727812 39728121 -202936232 - AluSq SINE Alu -3 310 1 2338 67 3 20 chr1 39728489 39728789 -202935564 - AluSq SINE Alu -18 295 1 843 195 0 29 chr1 39728899 39729073 -202935280 - FRAM SINE Alu -10 166 1 1900 118 46 46 chr1 39729519 39729825 -202934528 + AluSx SINE Alu 1 306 -6 268 180 0 0 chr1 39729887 39729937 -202934416 + Charlie8 DNA MER1_type 1360 1409 -1008 533 224 42 116 chr1 39729987 39730228 -202934125 + MIR SINE MIR 2 224 -38 1631 184 19 32 chr1 39730231 39730525 -202933828 + AluJo SINE Alu 1 292 -20 191 35 0 35 chr1 39730525 39730554 -202933799 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 1631 184 19 32 chr1 39730554 39730568 -202933785 + AluJo SINE Alu 292 305 -7 209 299 175 40 chr1 39730773 39731024 -202933329 + L2 LINE L2 2010 2294 -1020 1279 198 58 66 chr1 39731115 39731479 -202932874 + MLT1A2 LTR MaLR 1 361 -13 440 317 48 0 chr1 39731483 39731628 -202932725 + L2 LINE L2 2794 2945 -369 344 364 6 6 chr1 39731991 39732153 -202932200 + L2 LINE L2 2888 3049 -223 342 290 13 65 chr1 39733146 39733301 -202931052 - MIR SINE MIR -96 166 20 330 305 104 68 chr1 39733613 39733636 -202930717 + MIR SINE MIR 5 26 -236 2362 101 0 0 chr1 39733636 39733933 -202930420 + AluY SINE Alu 1 297 -14 330 305 104 68 chr1 39733933 39734158 -202930195 + MIR SINE MIR 26 262 0 * 548 235 71 44 chr1 39734151 39734334 -202930019 - MIR SINE MIR -64 198 11 310 185 0 0 chr1 39734313 39734367 -202929986 - L2 LINE L2 0 3272 3219 * 259 251 62 73 chr1 39734819 39734877 -202929476 + L1M4 LINE L1 3975 4032 -2114 2345 92 0 0 chr1 39734877 39735170 -202929183 - AluSx SINE Alu -19 293 1 259 251 62 73 chr1 39735170 39735290 -202929063 + L1M4 LINE L1 4032 4151 -1995 1971 166 3 25 chr1 39735753 39736072 -202928281 + AluJb SINE Alu 1 312 0 2486 55 14 0 chr1 39736573 39736866 -202927487 - AluY SINE Alu -14 297 1 326 250 29 19 chr1 39736986 39737090 -202927263 - MIR SINE MIR -110 152 48 202 200 360 0 chr1 39737590 39737665 -202926688 - L2 LINE L2 -2 3270 3169 249 326 11 11 chr1 39738217 39738312 -202926041 + MIR3 SINE MIR 4 98 -110 206 314 81 32 chr1 39738993 39739117 -202925236 + L2 LINE L2 3184 3313 0 24 0 0 0 chr1 39739361 39739385 -202924968 + AT_rich Low_complexity Low_complexity 1 24 0 721 111 0 0 chr1 39739395 39739503 -202924850 - AluJo SINE Alu -175 137 30 2516 69 7 13 chr1 39739521 39739827 -202924526 - AluSx SINE Alu -8 304 1 241 274 131 51 chr1 39739831 39740006 -202924347 - MIR SINE MIR -1 261 73 29 0 0 0 chr1 39740848 39740877 -202923476 + GC_rich Low_complexity Low_complexity 1 29 0 552 261 147 18 chr1 39741323 39741541 -202922812 + MIR SINE MIR 7 252 -10 3668 161 42 6 chr1 39741570 39742255 -202922098 + MER67C LTR ERV1 1 710 0 379 47 0 47 chr1 39742432 39742496 -202921857 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 215 288 0 17 chr1 39745006 39745072 -202919281 - MIR SINE MIR -123 85 21 1785 155 41 17 chr1 39745157 39745333 -202919020 - AluJb SINE Alu -15 297 110 252 86 0 0 chr1 39745333 39745368 -202918985 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 155 41 17 chr1 39745368 39745481 -202918872 - AluJb SINE Alu -202 110 1 856 242 35 13 chr1 39746480 39746710 -202917643 + MIR SINE MIR 2 235 -27 632 216 8 84 chr1 39746723 39746776 -202917577 - MIR SINE MIR -1 261 206 309 109 0 0 chr1 39746776 39746822 -202917531 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2180 82 0 0 chr1 39746827 39747095 -202917258 - AluSx SINE Alu -34 278 11 632 216 8 84 chr1 39747095 39747263 -202917090 - MIR SINE MIR -60 202 57 636 262 87 52 chr1 39747477 39747660 -202916693 - MIR SINE MIR 0 262 66 2436 91 0 3 chr1 39747660 39747967 -202916386 - AluSx SINE Alu -6 306 1 636 262 87 52 chr1 39747967 39748035 -202916318 - MIR SINE MIR -196 66 2 1010 248 120 22 chr1 39749475 39749834 -202914519 + L2 LINE L2 2918 3311 -2 357 294 0 29 chr1 39749845 39750015 -202914338 + (TCTCTG)n Simple_repeat Simple_repeat 4 168 0 846 289 14 5 chr1 39750784 39750992 -202913361 + MIR SINE MIR 45 254 -8 578 50 0 0 chr1 39751011 39751091 -202913262 - Alu SINE Alu -5 307 228 1140 111 0 0 chr1 39751091 39751235 -202913118 - AluSq/x SINE Alu -169 144 1 455 257 173 6 chr1 39751411 39751590 -202912763 + MIR SINE MIR 5 213 -49 2367 97 0 7 chr1 39751618 39751927 -202912426 - AluSq SINE Alu -6 307 1 831 234 78 0 chr1 39752477 39752669 -202911684 + MER63A DNA MER1_type 2 208 -2 917 274 22 4 chr1 39752833 39753063 -202911290 + MIR SINE MIR 2 235 -27 226 351 132 17 chr1 39753076 39753250 -202911103 + L2 LINE L2 2764 2957 -357 1947 153 13 29 chr1 39753276 39753589 -202910764 - AluJb SINE Alu -3 309 2 379 261 75 43 chr1 39753715 39753877 -202910476 + L2 LINE L2 3120 3290 -23 2250 96 3 13 chr1 39753877 39754180 -202910173 - AluSg SINE Alu -10 300 1 379 261 75 43 chr1 39754180 39754205 -202910148 + L2 LINE L2 3290 3313 0 304 271 0 0 chr1 39754259 39754343 -202910010 - MIR SINE MIR -63 145 72 2385 78 7 0 chr1 39754383 39754678 -202909675 - AluY SINE Alu -14 297 1 196 303 79 40 chr1 39754684 39754760 -202909593 - L3 LINE CR1 -10 1567 1489 456 193 85 108 chr1 39754770 39754867 -202909486 + MER58C DNA MER1_type 44 142 -2278 2415 100 0 0 chr1 39754867 39755177 -202909176 + AluSx SINE Alu 1 310 -2 1675 147 28 39 chr1 39755186 39755507 -202908846 + AluJb SINE Alu 1 318 0 456 193 85 108 chr1 39755507 39755574 -202908779 + MER58C DNA MER1_type 150 215 0 460 331 106 13 chr1 39755578 39755880 -202908473 - L3 LINE CR1 -83 1494 1165 556 314 87 0 chr1 39756153 39756360 -202907993 + MIR SINE MIR 15 239 -23 927 242 31 74 chr1 39756448 39756799 -202907554 - LTR16C LTR ERVL 0 491 156 554 264 107 6 chr1 39757457 39757616 -202906737 - MER91A DNA MER1_type -7 189 15 842 281 15 23 chr1 39758026 39758286 -202906067 + MIR SINE MIR 2 259 -3 1410 251 76 16 chr1 39760377 39761079 -202903274 + L2 LINE L2 2574 3311 -2 2336 125 0 0 chr1 39761254 39761566 -202902787 - AluSx SINE Alu 0 312 1 2444 102 0 6 chr1 39761587 39761901 -202902452 - AluSx SINE Alu 0 312 1 204 273 55 0 chr1 39761967 39762022 -202902331 - L2 LINE L2 -56 3216 3159 470 274 121 58 chr1 39762119 39762532 -202901821 + L2 LINE L2 2823 3261 -11 461 305 60 0 chr1 39762533 39762700 -202901653 + MIR SINE MIR 80 256 -6 204 260 78 13 chr1 39762758 39762835 -202901518 + L3b LINE CR1 1294 1375 -208 675 280 115 0 chr1 39762879 39763097 -202901256 + MIR SINE MIR 16 258 -4 395 252 28 21 chr1 39763621 39763764 -202900589 + L2 LINE L2 2887 3030 -242 2361 106 3 0 chr1 39763773 39764085 -202900268 - AluSq SINE Alu 0 313 1 293 229 22 2 chr1 39764208 39764304 -202900049 - MIR SINE MIR -73 135 53 2395 94 7 0 chr1 39765004 39765302 -202899051 + AluSq SINE Alu 1 300 -13 6171 130 34 15 chr1 39765388 39766339 -202898014 - LTR5 LTR ERVK 0 969 1 3174 92 14 0 chr1 39766339 39766783 -202897570 - HERVK LTR ERVK 0 7243 6794 * 3359 147 19 31 chr1 39766778 39767532 -202896821 - HERVK LTR ERVK -1698 5719 4995 532 118 24 0 chr1 39767534 39767619 -202896734 + AluSp/q SINE Alu 217 303 -10 810 118 8 8 chr1 39767746 39767873 -202896480 + MLT1D LTR MaLR 32 158 -347 21 0 0 0 chr1 39767916 39767937 -202896416 + AT_rich Low_complexity Low_complexity 1 21 0 1266 101 0 0 chr1 39767937 39768096 -202896257 - AluSp SINE Alu -15 298 140 2244 124 0 0 chr1 39768102 39768409 -202895944 - AluY SINE Alu -4 307 1 420 337 6 12 chr1 39768477 39768643 -202895710 + L2 LINE L2 2916 3080 -192 243 353 0 16 chr1 39769900 39770022 -202894331 + (TTCA)n Simple_repeat Simple_repeat 1 120 0 * 254 353 0 0 chr1 39769959 39770027 -202894326 + (CCCA)n Simple_repeat Simple_repeat 2 69 0 623 222 10 3 chr1 39770027 39770339 -202894014 + (TCCA)n Simple_repeat Simple_repeat 1 314 0 210 317 24 0 chr1 39770340 39770422 -202893931 - L2 LINE L2 -2 3311 3228 302 351 88 45 chr1 39770483 39770719 -202893634 + L2 LINE L2 371 596 -2718 2307 104 0 0 chr1 39770719 39771017 -202893336 - AluSq SINE Alu -13 300 3 302 351 88 45 chr1 39771017 39771396 -202892957 + L2 LINE L2 596 1012 -2302 1668 174 13 27 chr1 39771512 39771810 -202892543 - AluJb SINE Alu -18 294 1 891 187 46 120 chr1 39771937 39771977 -202892376 - L1MC4 LINE L1 -2 8040 7999 2516 73 0 3 chr1 39771977 39772278 -202892075 + AluY SINE Alu 1 300 -11 891 187 46 120 chr1 39772278 39772586 -202891767 - L1MC4 LINE L1 -43 7999 7719 943 197 94 10 chr1 39772726 39772929 -202891424 + MER58A DNA MER1_type 5 224 0 855 102 57 25 chr1 39772937 39773094 -202891259 + MER3 DNA MER1_type 1 162 -47 23 0 0 0 chr1 39773094 39773117 -202891236 + AT_rich Low_complexity Low_complexity 1 23 0 * 858 154 0 22 chr1 39773100 39773236 -202891117 - FLAM_C SINE Alu -10 133 1 31 44 0 0 chr1 39773239 39773284 -202891069 + AT_rich Low_complexity Low_complexity 1 45 0 * 206 93 47 47 chr1 39773251 39773294 -202891059 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 1990 134 8 0 chr1 39773294 39773585 -202890768 - AluJb SINE Alu -22 290 1 240 167 14 83 chr1 39773585 39773649 -202890704 + MER3 DNA MER1_type 215 209 0 233 220 20 0 chr1 39773607 39773657 -202890696 - MER3 DNA MER1_type -119 90 40 * 1088 277 66 78 chr1 39773788 39775126 -202889227 - L1ME3A LINE L1 -230 6009 4657 545 111 12 0 chr1 39775126 39775207 -202889146 - AluJ/FRAM SINE Alu -12 300 219 752 161 0 0 chr1 39775207 39775325 -202889028 - AluJo/FLAM SINE Alu -183 119 2 1088 277 66 78 chr1 39775325 39775564 -202888789 - L1ME3A LINE L1 -1581 4658 4418 2361 106 3 0 chr1 39775564 39775876 -202888477 - AluSq SINE Alu 0 313 1 1088 277 66 78 chr1 39775876 39776101 -202888252 - L1ME3A LINE L1 -1821 4418 4192 1887 146 3 10 chr1 39776101 39776396 -202887957 + AluJo SINE Alu 1 293 -19 1088 277 66 78 chr1 39776396 39776494 -202887859 - L1ME3A LINE L1 -2047 4192 4094 1050 133 5 0 chr1 39776494 39776690 -202887663 + L1MA7 LINE L1 6095 6291 0 1088 277 66 78 chr1 39776690 39777024 -202887329 - L1ME3A LINE L1 -2145 4094 3658 642 288 113 51 chr1 39777149 39777460 -202886893 - L1ME3A LINE L1 -2876 3339 3049 2310 95 7 0 chr1 39777460 39777765 -202886588 - AluSp SINE Alu -6 307 1 642 288 113 51 chr1 39777765 39778012 -202886341 - L1ME3A LINE L1 -3166 3049 2819 1510 138 22 116 chr1 39778012 39778100 -202886253 + AluJo SINE Alu 24 119 -193 2147 110 30 0 chr1 39778100 39778400 -202885953 + AluSg SINE Alu 1 309 -1 1510 138 22 116 chr1 39778400 39778629 -202885724 + AluJo SINE Alu 119 311 -1 642 288 113 51 chr1 39778629 39778969 -202885384 - L1ME3A LINE L1 -3396 2819 2384 1766 157 14 20 chr1 39778986 39779279 -202885074 - AluJo SINE Alu -21 291 1 242 208 231 69 chr1 39779279 39779409 -202884944 - L1ME3A LINE L1 -3818 2397 2247 987 266 63 34 chr1 39779876 39780841 -202883512 - L1MEd LINE L1 -4581 1815 781 743 193 45 87 chr1 39780850 39781114 -202883239 - MER2 DNA MER2_type -1 344 92 935 147 6 62 chr1 39781117 39781294 -202883059 - AluJb SINE Alu -16 296 130 565 30 0 0 chr1 39781331 39781397 -202882956 - AluY SINE Alu -181 130 65 2407 273 14 17 chr1 39831399 39832061 -202832292 - L1MEd LINE L1 -5702 694 35 1513 278 130 16 chr1 39832066 39833068 -202831285 + L2 LINE L2 2199 3313 0 209 317 83 25 chr1 39833890 39834010 -202830343 - MIR SINE MIR -68 194 68 897 266 120 36 chr1 39834104 39834461 -202829892 + L2 LINE L2 2925 3311 -2 355 262 0 0 chr1 39835042 39835126 -202829227 + MIR SINE MIR 32 115 -147 270 347 44 52 chr1 39835216 39835467 -202828886 + L2 LINE L2 2995 3243 -29 673 280 30 34 chr1 39835648 39835817 -202828536 - MIR SINE MIR -25 237 66 760 242 82 26 chr1 39835817 39836011 -202828342 + MER63A DNA MER1_type 3 207 -3 673 280 30 34 chr1 39836011 39836059 -202828294 - MIR SINE MIR -196 66 19 363 301 147 67 chr1 39836060 39836359 -202827994 + L1MC4a LINE L1 5852 6174 -1634 222 37 0 0 chr1 39837011 39837038 -202827315 + (TG)n Simple_repeat Simple_repeat 2 28 0 1764 173 0 0 chr1 39837038 39837322 -202827031 - AluJb SINE Alu -28 284 1 217 222 235 12 chr1 39837606 39837687 -202826666 + L3 LINE CR1 1352 1450 -127 797 192 6 18 chr1 39837704 39837871 -202826482 + MLT1A1 LTR MaLR 229 365 0 344 325 8 0 chr1 39838467 39838584 -202825769 - L2 LINE L2 -16 3297 3180 784 272 25 42 chr1 39838928 39839167 -202825186 - MIR SINE MIR 0 262 28 225 289 7 89 chr1 39839282 39839417 -202824936 + MIR SINE MIR 80 203 -59 511 284 74 37 chr1 39841239 39841454 -202822899 + MIR SINE MIR 5 227 -35 294 180 0 0 chr1 39841460 39841521 -202822832 + CT-rich Low_complexity Low_complexity 3 63 0 1919 138 0 22 chr1 39841962 39842273 -202822080 - AluSx SINE Alu -8 304 1 234 0 0 0 chr1 39842298 39842324 -202822029 + (TC)n Simple_repeat Simple_repeat 1 26 0 243 321 18 27 chr1 39842430 39842542 -202821811 + Charlie8 DNA MER1_type 1 111 -2306 300 234 0 0 chr1 39842642 39842706 -202821647 + Charlie8 DNA MER1_type 2354 2417 0 527 318 46 15 chr1 39843185 39843380 -202820973 + MIR SINE MIR 1 201 -61 591 270 141 0 chr1 39843388 39843551 -202820802 + MER5A DNA MER1_type 4 189 0 290 252 119 28 chr1 39843648 39843791 -202820562 + MIR SINE MIR 41 196 -66 1722 164 30 0 chr1 39843899 39844198 -202820155 - AluJo SINE Alu -4 308 1 280 366 32 8 chr1 39844198 39844321 -202820032 - MIR SINE MIR -113 149 24 235 268 0 0 chr1 39844855 39844911 -202819442 + C-rich Low_complexity Low_complexity 3 58 0 282 358 53 42 chr1 39845097 39845452 -202818901 + L2 LINE L2 2225 2583 -731 896 201 64 137 chr1 39845524 39845946 -202818407 + LTR16C LTR ERVL 101 491 0 267 279 23 12 chr1 39846863 39846949 -202817404 - L3b LINE CR1 -199 1384 1298 209 204 20 0 chr1 39847521 39847570 -202816783 + (CTGGGG)n Simple_repeat Simple_repeat 3 52 0 302 288 39 0 chr1 39847858 39848011 -202816342 + (CA)n Simple_repeat Simple_repeat 2 160 0 306 287 27 13 chr1 39848062 39848212 -202816141 + (CA)n Simple_repeat Simple_repeat 1 152 0 233 298 19 10 chr1 39848459 39848563 -202815790 + (CA)n Simple_repeat Simple_repeat 2 106 0 210 71 0 0 chr1 39848814 39848842 -202815511 + (CA)n Simple_repeat Simple_repeat 1 28 0 857 213 51 23 chr1 39849023 39849239 -202815114 - MIR SINE MIR -12 250 29 303 296 76 15 chr1 39849844 39849976 -202814377 + MIR SINE MIR 13 152 -110 345 265 8 45 chr1 39850372 39851010 -202813343 + (CAGCT)n Simple_repeat Simple_repeat 1 614 0 * 390 287 0 28 chr1 39850931 39851467 -202812886 + (CAGCC)n Simple_repeat Simple_repeat 1 521 0 345 247 49 0 chr1 39853197 39853278 -202811075 + L2 LINE L2 3188 3272 0 301 45 0 0 chr1 39853330 39853374 -202810979 - L2 LINE L2 0 3313 3270 240 262 24 36 chr1 39854053 39854137 -202810216 + (CATG)n Simple_repeat Simple_repeat 3 85 0 478 226 30 30 chr1 39854302 39854435 -202809918 - MIR3 SINE MIR -35 173 41 209 226 19 0 chr1 39854557 39854610 -202809743 - L2 LINE L2 0 3272 3219 332 280 21 0 chr1 39856683 39856776 -202807577 + MIR SINE MIR 42 136 -72 249 33 0 0 chr1 39856779 39856809 -202807544 + (TAA)n Simple_repeat Simple_repeat 2 31 0 266 254 290 41 chr1 39856820 39856989 -202807364 - MIR3 SINE MIR -17 245 35 2305 92 3 0 chr1 39857056 39857361 -202806992 - AluSp SINE Alu -7 306 1 464 146 130 24 chr1 39857434 39857557 -202806796 + MER53 DNA DNA 7 142 -47 208 256 43 77 chr1 39857704 39857821 -202806532 + MIR SINE MIR 108 220 -42 239 340 95 5 chr1 39858066 39858226 -202806127 + MIR3 SINE MIR 46 218 -35 2270 77 0 17 chr1 39859139 39859438 -202804915 - AluY SINE Alu -17 294 1 355 283 5 0 chr1 39859555 39859750 -202804603 + (CA)n Simple_repeat Simple_repeat 1 196 0 1127 97 0 0 chr1 39860203 39860357 -202803996 + AluSg/x SINE Alu 159 312 0 317 355 14 22 chr1 39860467 39860605 -202803748 + MER5A DNA MER1_type 38 185 -4 202 296 45 38 chr1 39860489 39860621 -202803732 - MER5A DNA MER1_type -56 133 1 * 283 340 49 39 chr1 39860736 39860907 -202803446 - MIR SINE MIR -14 194 21 899 276 111 8 chr1 39860911 39861273 -202803080 - MLT1I LTR MaLR -3 406 8 189 0 0 0 chr1 39861405 39861426 -202802927 + (TCTCTG)n Simple_repeat Simple_repeat 3 23 0 264 306 0 54 chr1 39861482 39861593 -202802760 + MIR SINE MIR 41 145 -63 348 306 88 39 chr1 39862155 39862375 -202801978 - HAL1b LINE L1 -1 6120 1129 671 151 8 0 chr1 39862402 39862528 -202801825 + (CCCA)n Simple_repeat Simple_repeat 3 129 0 225 301 46 107 chr1 39862765 39862981 -202801372 + L2 LINE L2 3020 3222 -50 184 352 171 0 chr1 39863225 39863330 -202801023 - L3 LINE CR1 -116 1461 1339 359 264 90 26 chr1 39863333 39863488 -202800865 - MIR3 SINE MIR -9 199 35 379 282 60 85 chr1 39864097 39864345 -202800008 - MIR SINE MIR -7 255 14 * 807 297 8 23 chr1 39864280 39864536 -202799817 + MIR SINE MIR 11 262 0 394 289 176 0 chr1 39864556 39864715 -202799638 - MIR SINE MIR -12 250 64 722 269 130 46 chr1 39865215 39865538 -202798815 - L2 LINE L2 0 3313 2964 372 281 94 10 chr1 39865744 39865936 -202798417 + L2 LINE L2 2836 3043 -229 293 267 35 17 chr1 39867001 39867117 -202797236 - L2 LINE L2 0 3313 3196 287 280 88 32 chr1 39867274 39867399 -202796954 + MIR SINE MIR 59 190 -72 292 315 22 0 chr1 39867490 39867579 -202796774 + L2 LINE L2 3163 3253 -19 677 281 61 0 chr1 39868626 39868857 -202795496 - MIR SINE MIR -10 252 8 599 292 50 15 chr1 39870846 39871048 -202793305 + MIR SINE MIR 54 262 0 435 272 80 54 chr1 39871096 39871320 -202793033 + MIR SINE MIR 19 248 -14 264 260 135 10 chr1 39871975 39872071 -202792282 - MIR SINE MIR -81 127 20 2257 88 0 3 chr1 39872113 39872410 -202791943 + AluSc SINE Alu 1 296 -13 1984 129 6 22 chr1 39872722 39873039 -202791314 + AluSx SINE Alu 1 312 0 306 356 62 10 chr1 39873236 39873444 -202790909 + MIR SINE MIR 42 260 -2 201 299 103 0 chr1 39873757 39873844 -202790509 - MIR SINE MIR -81 181 86 2048 108 4 0 chr1 39873856 39874134 -202790219 + AluSq SINE Alu 11 289 -24 311 0 0 25 chr1 39874142 39874182 -202790171 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 306 299 0 11 chr1 39874351 39874438 -202789915 - MIR SINE MIR -93 115 30 264 130 0 0 chr1 39874548 39874594 -202789759 + (GGCTG)n Simple_repeat Simple_repeat 1 46 0 2262 109 3 0 chr1 39875095 39875389 -202788964 - AluSx SINE Alu -17 295 1 552 217 120 49 chr1 39877006 39877190 -202787163 - MER63A DNA MER1_type -13 197 1 645 311 55 45 chr1 39877208 39877517 -202786836 + LTR16C LTR ERVL 179 490 -1 728 238 121 4 chr1 39878880 39879111 -202785242 + MLT1J2 LTR MaLR 73 330 -120 2196 213 104 29 chr1 39879123 39879701 -202784652 + MLT1E2 LTR MaLR 6 626 0 1669 199 30 7 chr1 39879739 39880036 -202784317 + AluJo SINE Alu 1 304 -8 442 213 37 19 chr1 39880289 39880397 -202783956 - MIR3 SINE MIR -86 122 13 195 129 0 0 chr1 39880875 39880906 -202783447 + (TG)n Simple_repeat Simple_repeat 1 31 0 209 203 25 51 chr1 39882186 39882265 -202782088 + (TGG)n Simple_repeat Simple_repeat 2 78 0 277 291 32 19 chr1 39882300 39882458 -202781895 + (ATGGTG)n Simple_repeat Simple_repeat 1 160 0 552 292 73 11 chr1 39883221 39883433 -202780920 + MIR SINE MIR 7 228 -34 372 348 39 17 chr1 39883923 39884104 -202780249 + MIR SINE MIR 3 187 -75 1663 227 113 18 chr1 39884105 39884621 -202779732 + MLT1E LTR MaLR 1 615 -11 468 0 0 0 chr1 39884855 39884907 -202779446 + (CA)n Simple_repeat Simple_repeat 2 53 0 215 312 11 0 chr1 39885267 39885360 -202778993 + GA-rich Low_complexity Low_complexity 2 95 0 397 262 19 0 chr1 39886701 39886804 -202777549 + MER103 DNA DNA 58 162 -4 232 309 0 0 chr1 39887112 39887167 -202777186 + (TG)n Simple_repeat Simple_repeat 1 55 0 186 43 0 0 chr1 39887477 39887500 -202776853 + (TA)n Simple_repeat Simple_repeat 2 24 0 1689 180 122 20 chr1 39887508 39888059 -202776294 + MLT1E1 LTR MaLR 1 592 -1 254 267 50 17 chr1 39888106 39888226 -202776127 + (CATATA)n Simple_repeat Simple_repeat 6 129 0 249 108 0 0 chr1 39888234 39888271 -202776082 + (CA)n Simple_repeat Simple_repeat 2 38 0 363 184 53 0 chr1 39888368 39888444 -202775909 - MIR SINE MIR 0 262 183 950 175 16 21 chr1 39888988 39889182 -202775171 - MIR SINE MIR -5 257 65 245 272 25 12 chr1 39890087 39890168 -202774185 + (CCAA)n Simple_repeat Simple_repeat 1 82 0 239 247 117 0 chr1 39890204 39890281 -202774072 - L2 LINE L2 -50 3222 3137 673 226 55 0 chr1 39890546 39890710 -202773643 + MIR SINE MIR 89 261 -1 180 200 0 0 chr1 39892765 39892820 -202771533 + (CA)n Simple_repeat Simple_repeat 1 55 0 252 216 0 0 chr1 39892872 39892969 -202771384 + (CA)n Simple_repeat Simple_repeat 1 97 0 290 221 0 26 chr1 39892972 39893049 -202771304 + (CATA)n Simple_repeat Simple_repeat 1 75 0 387 237 0 0 chr1 39893063 39893240 -202771113 + (CA)n Simple_repeat Simple_repeat 2 178 0 259 253 6 6 chr1 39893257 39893423 -202770930 + (CA)n Simple_repeat Simple_repeat 1 166 0 222 229 0 0 chr1 39894174 39894244 -202770109 + (TG)n Simple_repeat Simple_repeat 2 71 0 223 191 43 0 chr1 39894879 39894926 -202769427 + L2 LINE L2 3223 3271 -1 483 206 3 0 chr1 39895011 39895117 -202769236 - MIR SINE MIR -65 143 35 1427 273 112 8 chr1 39895172 39895643 -202768710 + MLT1H1 LTR MaLR 13 552 -3 200 167 24 24 chr1 39895647 39895731 -202768622 + (CA)n Simple_repeat Simple_repeat 2 85 0 201 74 0 0 chr1 39896659 39896686 -202767667 + (TG)n Simple_repeat Simple_repeat 1 27 0 1001 289 113 47 chr1 39896888 39897845 -202766508 - L2 LINE L2 -57 3256 2243 2785 174 29 15 chr1 39897985 39898532 -202765821 + L1MB3 LINE L1 5628 6182 -1 818 236 10 15 chr1 39898532 39898731 -202765622 + MIR SINE MIR 19 216 -46 612 198 0 0 chr1 39898810 39898916 -202765437 + AluJb SINE Alu 21 126 -186 442 128 96 0 chr1 39898982 39899076 -202765277 - L1MB3 LINE L1 -1 6182 6080 2363 84 20 0 chr1 39899970 39900266 -202764087 - AluSc SINE Alu -7 302 1 534 160 16 24 chr1 39900328 39900444 -202763909 - MLT1F LTR MaLR 0 542 428 3462 107 12 0 chr1 39900444 39900928 -202763425 - MER1A DNA MER1_type 0 529 40 1946 197 72 58 chr1 39900908 39901323 -202763030 - MLT1F1 LTR MaLR -77 490 83 * 1904 153 38 0 chr1 39901323 39901611 -202762742 - AluJb SINE Alu -13 299 1 1946 197 72 58 chr1 39901611 39901654 -202762699 - MLT1F1 LTR MaLR -484 83 42 2257 107 0 3 chr1 39901654 39901952 -202762401 - AluSc SINE Alu -12 297 1 1946 197 72 58 chr1 39901952 39901975 -202762378 - MLT1F1 LTR MaLR -525 42 1 481 330 47 34 chr1 39902304 39902537 -202761816 + MIR SINE MIR 3 238 -24 373 258 133 12 chr1 39903350 39903513 -202760840 + MIR SINE MIR 16 197 -59 583 181 181 0 chr1 39903756 39903911 -202760442 + MER5A DNA MER1_type 6 188 -1 262 289 13 13 chr1 39904194 39904343 -202760010 + (TG)n Simple_repeat Simple_repeat 1 149 0 201 147 0 0 chr1 39904746 39904780 -202759573 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 215 280 20 0 chr1 39905656 39905706 -202758647 - L2 LINE L2 -86 3186 3136 625 266 35 25 chr1 39905829 39906028 -202758325 + MIR SINE MIR 46 246 -16 322 316 18 26 chr1 39907140 39907254 -202757099 - MIR SINE MIR -13 249 137 402 245 211 20 chr1 39907285 39907489 -202756864 + L2 LINE L2 3011 3253 -60 1989 100 4 0 chr1 39907581 39907842 -202756511 + AluSx SINE Alu 44 305 -7 1096 234 150 28 chr1 39908649 39909033 -202755320 + LTR33 LTR ERVL 5 456 -65 2218 126 3 0 chr1 39909033 39909327 -202755026 - AluSx SINE Alu -17 295 1 1096 234 150 28 chr1 39909327 39909403 -202754950 + LTR33 LTR ERVL 456 521 0 235 114 0 0 chr1 39910479 39910514 -202753839 + MIR SINE MIR 120 154 -108 456 256 12 22 chr1 39910527 39910731 -202753622 - MIR3 SINE MIR -48 214 14 1115 278 80 44 chr1 39910767 39911538 -202752815 - L1MC4a LINE L1 -743 5403 4662 2872 19 0 0 chr1 39911538 39911848 -202752505 + AluYb8 SINE Alu 1 310 -8 507 73 0 0 chr1 39911848 39911916 -202752437 + (TA)n Simple_repeat Simple_repeat 2 69 0 1115 278 80 44 chr1 39911916 39912064 -202752289 - L1MC4a LINE L1 -1130 5016 4875 4872 130 42 37 chr1 39912072 39912582 -202751771 - L1MA9 LINE L1 -6 6306 5787 2339 104 3 3 chr1 39912582 39912891 -202751462 - AluSx SINE Alu -3 309 1 4872 130 42 37 chr1 39912891 39913332 -202751021 - L1MA9 LINE L1 -525 5787 5350 577 334 117 23 chr1 39913367 39913588 -202750765 - L1MC4a LINE L1 -1318 4828 4629 1867 155 28 0 chr1 39913588 39913872 -202750481 + AluJo SINE Alu 5 296 -16 577 334 117 23 chr1 39913872 39914682 -202749671 - L1MC4a LINE L1 -1517 4629 3700 813 140 0 0 chr1 39914684 39914820 -202749533 + (TG)n Simple_repeat Simple_repeat 1 136 0 327 358 28 32 chr1 39914829 39915047 -202749306 - L1MC4a LINE L1 -2469 3677 3461 490 268 16 0 chr1 39916615 39916738 -202747615 - L2 LINE L2 -1 3312 3188 255 261 0 14 chr1 39916738 39916807 -202747546 - MLT1K LTR MaLR -334 254 187 324 353 50 33 chr1 39918295 39918714 -202745639 + L2 LINE L2 2550 2975 -339 597 281 19 19 chr1 39918730 39918940 -202745413 + L2 LINE L2 2355 2564 -750 626 253 93 0 chr1 39918970 39919120 -202745233 - LTR16C LTR ERVL -128 363 200 194 170 0 64 chr1 39919625 39919672 -202744681 + L2 LINE L2 3224 3267 -5 290 318 16 8 chr1 39919677 39919806 -202744547 + L2 LINE L2 2704 2833 -481 250 352 24 0 chr1 39920050 39920175 -202744178 + L2 LINE L2 2934 3061 -211 309 315 24 47 chr1 39920328 39920455 -202743898 - L1ME3A LINE L1 -2 6168 6045 2112 124 17 3 chr1 39920457 39920756 -202743597 + AluSx SINE Alu 1 303 -9 414 205 17 12 chr1 39920756 39920885 -202743468 - MIR SINE MIR -63 145 14 1015 174 0 0 chr1 39920913 39921097 -202743256 + MER53 DNA DNA 5 188 -1 186 321 37 0 chr1 39921186 39921267 -202743086 + L2 LINE L2 3185 3268 -4 1999 144 20 3 chr1 39921372 39921650 -202742703 + AluJo SINE Alu 1 286 -26 243 61 0 0 chr1 39921650 39921683 -202742670 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 1999 144 20 3 chr1 39921683 39921703 -202742650 + AluJo SINE Alu 286 304 -8 264 242 11 0 chr1 39921863 39921932 -202742421 - MIR SINE MIR -63 145 94 334 276 31 0 chr1 39922519 39922617 -202741736 + (CCCCAG)n Simple_repeat Simple_repeat 6 106 0 187 264 36 100 chr1 39923033 39923143 -202741210 + L3 LINE CR1 1038 1140 -437 476 335 112 27 chr1 39923655 39923986 -202740367 - L2 LINE L2 0 3313 2955 394 341 76 9 chr1 39924099 39924322 -202740031 - MIR SINE MIR -7 255 18 2250 133 44 29 chr1 39924692 39925076 -202739277 + MLT1B LTR MaLR 1 390 0 3189 205 65 16 chr1 39925911 39926671 -202737682 - MER21B LTR ERV1 -54 809 13 605 241 7 22 chr1 39926846 39926983 -202737370 + MIR SINE MIR 47 181 -81 257 326 20 10 chr1 39926991 39927089 -202737264 - MIR SINE MIR -142 120 22 377 253 81 0 chr1 39927756 39927843 -202736510 + MIR SINE MIR 50 143 -65 1527 127 4 0 chr1 39927886 39928115 -202736238 + L1PB1 LINE L1 5922 6151 0 2212 105 30 13 chr1 39928332 39928637 -202735716 - AluSx SINE Alu -2 310 1 626 249 65 5 chr1 39928771 39928956 -202735397 + MIR SINE MIR 54 249 -13 215 319 29 68 chr1 39928978 39929185 -202735168 + L2 LINE L2 1787 1985 -1329 2474 190 26 6 chr1 39930041 39930531 -202733822 + MLT1D LTR MaLR 6 505 0 358 330 74 51 chr1 39930536 39930969 -202733384 - L2 LINE L2 -102 3170 2745 646 268 29 14 chr1 39930975 39931184 -202733169 + MLT1H LTR MaLR 13 224 -325 397 190 10 80 chr1 39931284 39931384 -202732969 + MLT1H LTR MaLR 454 546 -3 1035 232 65 127 chr1 39932138 39932330 -202732023 - L2 LINE L2 -422 2892 2690 218 54 0 27 chr1 39932330 39932367 -202731986 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 2219 73 4 4 chr1 39932367 39932640 -202731713 - AluSc SINE Alu -32 277 5 1035 232 65 127 chr1 39932640 39932901 -202731452 - L2 LINE L2 -623 2691 2503 200 86 29 0 chr1 39932901 39932936 -202731417 + (TG)n Simple_repeat Simple_repeat 1 36 0 1035 232 65 127 chr1 39932936 39933252 -202731101 - L2 LINE L2 -811 2503 2169 394 306 21 42 chr1 39933256 39933400 -202730953 + L2 LINE L2 3171 3311 -2 369 243 37 37 chr1 39934448 39934555 -202729798 + MIR SINE MIR 100 206 -56 319 253 84 0 chr1 39934559 39934642 -202729711 + MIR SINE MIR 119 208 -54 295 200 46 0 chr1 39934660 39934725 -202729628 + MIR SINE MIR 139 206 -56 340 186 43 0 chr1 39934740 39934810 -202729543 + MIR SINE MIR 134 206 -56 394 283 26 9 chr1 39934825 39934938 -202729415 + MIR SINE MIR 134 248 -14 472 223 97 0 chr1 39935116 39935219 -202729134 + MER81 DNA DNA 2 114 0 271 299 41 21 chr1 39935916 39936013 -202728340 + MIR SINE MIR 45 143 -65 608 48 12 0 chr1 39936280 39936364 -202727989 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 373 200 0 0 chr1 39936364 39936429 -202727924 - FLAM SINE Alu -15 118 54 271 285 85 50 chr1 39936583 39936773 -202727580 + MIR SINE MIR 2 195 -67 2319 115 0 0 chr1 39936927 39937223 -202727130 - AluSq SINE Alu -17 296 1 827 216 51 28 chr1 39938022 39938493 -202725860 + LTR33 LTR ERVL 13 521 0 392 314 109 29 chr1 39939460 39939699 -202724654 + L2 LINE L2 2542 2799 -515 223 314 89 96 chr1 39939726 39939997 -202724356 + L2 LINE L2 2992 3260 -12 * 765 226 211 64 chr1 39939971 39940378 -202723975 - L2 LINE L2 0 3313 2847 271 214 22 34 chr1 39940388 39940477 -202723876 - MER97b DNA MER1_type? -874 179 92 214 278 0 0 chr1 39940600 39940654 -202723699 + MIR SINE MIR 69 122 -140 1687 159 4 0 chr1 39940706 39940970 -202723383 - AluJb SINE Alu -46 266 2 1598 211 51 33 chr1 39941457 39941509 -202722844 - MLT1C LTR MaLR 0 467 417 375 23 0 0 chr1 39941509 39941553 -202722800 + (CA)n Simple_repeat Simple_repeat 2 45 0 1598 211 51 33 chr1 39941553 39941954 -202722399 - MLT1C LTR MaLR -50 417 6 2583 72 3 0 chr1 39942608 39942914 -202721439 + AluSc SINE Alu 1 307 -2 441 185 12 7 chr1 39943067 39943163 -202721190 - MIR SINE MIR -46 162 69 410 243 81 27 chr1 39944413 39944524 -202719829 - MIR SINE MIR -126 136 20 605 196 9 0 chr1 39947490 39947602 -202716751 - MER45A DNA AcHobo -3 175 63 451 319 128 15 chr1 39947671 39947944 -202716409 - LTR16C LTR ERVL -25 466 163 1593 162 25 32 chr1 39947945 39948259 -202716094 - AluJo SINE Alu 0 312 1 341 205 12 24 chr1 39949411 39949494 -202714859 + MLT1J2 LTR MaLR 1 82 -368 318 337 48 42 chr1 39949496 39949662 -202714691 - L2 LINE L2 -234 3038 2872 237 273 53 61 chr1 39950241 39950373 -202713980 - MIR SINE MIR -95 167 37 466 304 65 18 chr1 39950789 39950957 -202713396 + MIR SINE MIR 20 195 -67 483 304 187 38 chr1 39951009 39952431 -202711922 + L2 LINE L2 1224 3306 -7 909 238 35 5 chr1 39953166 39953368 -202710985 + MIR SINE MIR 7 214 -48 1838 86 0 16 chr1 39953536 39953781 -202710572 + AluSq SINE Alu 73 313 0 488 282 40 0 chr1 39953849 39953973 -202710380 + MIR3 SINE MIR 31 159 -49 657 230 45 28 chr1 39953982 39954160 -202710193 + MER117 DNA MER1_type 16 196 -1 673 224 25 84 chr1 39955305 39955542 -202708811 + MIR SINE MIR 37 259 -3 1250 214 135 77 chr1 39956736 39957231 -202707122 - MLT1H LTR MaLR 0 549 26 1913 221 66 17 chr1 39958426 39958896 -202705457 - MLT1D LTR MaLR -12 493 1 746 300 63 4 chr1 39958896 39959149 -202705204 + LTR16C LTR ERVL 224 491 0 190 357 36 12 chr1 39959243 39959327 -202705026 + MIR SINE MIR 1 86 -176 596 256 121 20 chr1 39959778 39960075 -202704278 + Charlie7 DNA MER1_type 43 369 -2243 1299 246 92 17 chr1 39960078 39960537 -202703816 - L1ME3A LINE L1 -5 6165 5673 682 239 173 7 chr1 39960541 39960847 -202703506 + Charlie7 DNA MER1_type 353 709 -1903 2621 82 8 45 chr1 39960920 39961208 -202703145 - L1PB1 LINE L1 -7 6144 5874 1717 79 5 0 chr1 39961208 39961423 -202702930 + AluY SINE Alu 84 299 -12 2621 82 8 45 chr1 39961423 39961535 -202702818 - L1PB1 LINE L1 -277 5874 5759 1292 232 74 6 chr1 39961584 39961907 -202702446 + MLT1I LTR MaLR 65 409 0 3252 229 52 23 chr1 39961916 39962788 -202701565 + Charlie7 DNA MER1_type 716 1561 -1051 7601 26 0 5 chr1 39962788 39963742 -202700611 - L1PA4 LINE L1 0 6155 5199 2365 97 7 7 chr1 39963742 39964052 -202700301 - AluY SINE Alu -1 310 1 3252 229 52 23 chr1 39964052 39964130 -202700223 + Charlie7 DNA MER1_type 1560 1695 -917 369 86 0 0 chr1 39964146 39964204 -202700149 + (TA)n Simple_repeat Simple_repeat 2 59 0 2153 124 3 3 chr1 39964204 39964510 -202699843 - AluSx SINE Alu -6 306 1 1346 155 30 4 chr1 39964517 39964782 -202699571 - L1MD3 LINE L1 0 7995 7724 2697 193 59 37 chr1 39964802 39965421 -202698932 + Charlie7 DNA MER1_type 1713 2356 -256 2036 137 0 17 chr1 39965421 39965746 -202698607 - AluSq SINE Alu 0 313 1 2697 193 59 37 chr1 39965746 39965934 -202698419 + Charlie7 DNA MER1_type 2356 2538 -74 1205 237 89 60 chr1 39966526 39966977 -202697376 + MLT1C LTR MaLR 4 467 0 459 224 24 0 chr1 39967454 39967579 -202696774 - LTR16C LTR ERVL 0 491 364 391 182 0 30 chr1 39967597 39967696 -202696657 + G-rich Low_complexity Low_complexity 5 100 0 396 269 0 0 chr1 39967787 39967962 -202696391 + GA-rich Low_complexity Low_complexity 4 178 0 332 260 0 6 chr1 39967929 39968098 -202696255 + G-rich Low_complexity Low_complexity 4 171 0 * 269 266 0 7 chr1 39968127 39968266 -202696087 + G-rich Low_complexity Low_complexity 40 177 0 222 229 0 0 chr1 39968266 39968314 -202696039 + GA-rich Low_complexity Low_complexity 5 52 0 754 225 56 44 chr1 39968318 39968567 -202695786 - LTR16C LTR ERVL -89 402 151 337 214 0 0 chr1 39968887 39968954 -202695399 - MIR SINE MIR -61 147 104 206 320 0 13 chr1 39969131 39969209 -202695144 - MIR SINE MIR -105 157 81 752 213 55 6 chr1 39969533 39969697 -202694656 + MIR SINE MIR 16 187 -75 378 307 236 21 chr1 39970172 39970849 -202693504 + L2 LINE L2 2028 2850 -464 468 260 34 111 chr1 39971720 39971955 -202692398 - L2 LINE L2 -69 3203 2987 306 335 6 22 chr1 39972693 39972872 -202691481 + GA-rich Low_complexity Low_complexity 1 176 0 338 260 0 6 chr1 39973142 39973319 -202691034 + (CA)n Simple_repeat Simple_repeat 1 176 0 236 269 85 31 chr1 39973562 39973692 -202690661 - MIR SINE MIR -55 153 17 387 280 55 0 chr1 39974244 39974391 -202689962 - MIR SINE MIR -20 242 85 534 286 176 5 chr1 39974622 39974821 -202689532 + MIR SINE MIR 27 259 -3 911 274 48 24 chr1 39975269 39975521 -202688832 - MIR SINE MIR -2 260 3 256 275 43 0 chr1 39976208 39976277 -202688076 + MIR SINE MIR 87 158 -104 184 305 11 74 chr1 39976292 39976342 -202688011 + L2 LINE L2 3184 3227 -45 2445 81 7 0 chr1 39976342 39976649 -202687704 + AluY SINE Alu 1 309 -2 184 305 11 74 chr1 39976649 39976693 -202687660 + L2 LINE L2 3227 3272 0 726 283 74 52 chr1 39976843 39977249 -202687104 + MLT1L LTR MaLR 201 615 0 186 222 0 0 chr1 39977930 39977966 -202686387 - L2 LINE L2 -1 3312 3277 661 345 12 4 chr1 39977976 39978225 -202686128 + MIR SINE MIR 11 261 -1 598 293 133 54 chr1 39978950 39979281 -202685072 + L2 LINE L2 2916 3272 0 1061 94 11 11 chr1 39979544 39979724 -202684629 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 815 139 6 18 chr1 39979724 39979889 -202684464 + CT-rich Low_complexity Low_complexity 3 165 0 302 78 0 20 chr1 39979892 39979943 -202684410 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 306 267 0 13 chr1 39980291 39980366 -202683987 + L2 LINE L2 2986 3059 -213 1292 301 185 5 chr1 39980737 39981365 -202682988 + L2 LINE L2 1920 2660 -654 535 282 28 7 chr1 39981403 39981545 -202682808 + MIR SINE MIR 20 164 -98 487 309 152 14 chr1 39981693 39981903 -202682450 - MIR SINE MIR -5 257 19 241 167 24 0 chr1 39981915 39981957 -202682396 - 5S rRNA rRNA -76 45 3 2315 183 26 2 chr1 39982162 39982578 -202681775 - MSTB LTR MaLR 0 426 1 248 248 217 0 chr1 39983391 39983520 -202680833 - MLT1K LTR MaLR -20 568 412 2326 77 20 0 chr1 39983974 39984272 -202680081 - AluSx SINE Alu -8 304 1 421 277 23 31 chr1 39984873 39985003 -202679350 - MIR3 SINE MIR -65 143 15 291 339 68 25 chr1 39985271 39985551 -202678802 + L2 LINE L2 2245 2536 -778 472 223 97 0 chr1 39987791 39987894 -202676459 - MER81 DNA DNA 0 114 2 394 283 26 9 chr1 39988072 39988185 -202676168 - MIR SINE MIR -14 248 134 340 186 43 0 chr1 39988200 39988270 -202676083 - MIR SINE MIR -56 206 134 295 200 46 0 chr1 39988285 39988350 -202676003 - MIR SINE MIR -56 206 139 319 253 84 0 chr1 39988368 39988451 -202675902 - MIR SINE MIR -54 208 119 369 243 37 37 chr1 39988455 39988562 -202675791 - MIR SINE MIR -56 206 100 418 343 174 0 chr1 39990152 39990353 -202674000 - MIR SINE MIR -15 247 12 203 184 0 0 chr1 39991170 39991208 -202673145 + CT-rich Low_complexity Low_complexity 1 38 0 626 305 107 33 chr1 39991231 39991792 -202672561 - L2 LINE L2 -13 3300 2684 1166 70 0 0 chr1 39992648 39992790 -202671563 - AluY SINE Alu -8 303 162 349 281 172 19 chr1 39993522 39993778 -202670575 + MER102b DNA MER1_type 47 341 0 331 232 0 14 chr1 39993816 39993885 -202670468 - MIR SINE MIR -111 151 84 609 209 8 16 chr1 39993963 39994092 -202670261 - FLAM_A SINE Alu -5 128 1 460 289 29 79 chr1 39994103 39994175 -202670178 + MLT1J LTR MaLR 135 209 -302 2166 129 0 3 chr1 39994175 39994469 -202669884 + AluSx SINE Alu 1 293 -19 460 289 29 79 chr1 39994469 39994673 -202669680 + MLT1J LTR MaLR 209 397 -114 265 304 76 11 chr1 39994714 39994806 -202669547 - MIR SINE MIR -152 110 13 2260 122 0 0 chr1 39995285 39995588 -202668765 + AluSg SINE Alu 1 303 -7 1152 140 63 13 chr1 39995898 39996268 -202668085 + MLT2A2 LTR ERVL 149 453 0 215 306 53 47 chr1 39996284 39996454 -202667899 + L2 LINE L2 1932 2102 -1212 238 244 0 0 chr1 39996459 39996504 -202667849 + polypyrimidine Low_complexity Low_complexity 3 47 0 810 299 49 19 chr1 39996587 39996998 -202667355 - LTR16A LTR ERVL -6 444 22 222 281 47 0 chr1 39997197 39997261 -202667092 - L2 LINE L2 0 3313 3247 798 204 26 31 chr1 39998993 39999219 -202665134 + LTR33 LTR ERVL 2 226 -295 522 324 121 33 chr1 39999892 40000256 -202664097 - L3 LINE CR1 -2 1575 1180 409 219 116 0 chr1 40000469 40000604 -202663749 + MIR SINE MIR 34 187 -69 219 326 29 58 chr1 40000890 40001028 -202663325 + MIR SINE MIR 64 197 -65 248 269 137 56 chr1 40001233 40001322 -202663031 - L3 LINE CR1 -11 1566 1486 1741 157 56 17 chr1 40001322 40001609 -202662744 - AluJo SINE Alu -14 298 1 248 269 137 56 chr1 40001609 40001768 -202662585 - L3 LINE CR1 -91 1486 1298 1116 329 122 37 chr1 40002033 40003152 -202661201 + L2 LINE L2 1447 2660 -654 255 172 0 35 chr1 40003325 40003383 -202660970 + (TG)n Simple_repeat Simple_repeat 1 56 0 2402 107 0 10 chr1 40003416 40003724 -202660629 + AluSq SINE Alu 1 305 -8 292 283 94 38 chr1 40004362 40004521 -202659832 - L2 LINE L2 -2 3270 3103 1003 219 86 9 chr1 40004636 40004869 -202659484 + MIR SINE MIR 12 262 0 338 259 54 18 chr1 40005414 40005526 -202658827 - LTR33A LTR ERVL 0 523 408 301 235 59 39 chr1 40005933 40006035 -202658318 - MIR SINE MIR -56 152 49 244 211 18 0 chr1 40006486 40006543 -202657810 - LTR67 LTR ERVL -12 545 488 456 51 0 0 chr1 40007556 40007615 -202656738 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 3523 175 31 15 chr1 40008556 40009237 -202655116 - L1MB5 LINE L1 0 6174 5483 1213 135 6 0 chr1 40009257 40009435 -202654918 - AluSg/x SINE Alu -18 294 116 587 320 11 11 chr1 40009463 40009644 -202654709 - MIR SINE MIR -74 188 8 353 285 91 0 chr1 40009706 40009833 -202654520 + MIR SINE MIR 71 211 -51 273 309 32 8 chr1 40010075 40010198 -202654155 - L1ME4a LINE L1 -3 6118 5993 277 292 130 26 chr1 40010401 40010555 -202653798 + MIR SINE MIR 36 205 -57 243 0 0 0 chr1 40010727 40010754 -202653599 + (TG)n Simple_repeat Simple_repeat 2 28 0 1350 273 24 54 chr1 40012204 40012867 -202651486 - L1ME4a LINE L1 -208 5913 5271 2086 108 34 7 chr1 40012971 40013268 -202651085 - AluSc SINE Alu 0 309 5 4206 103 39 15 chr1 40013731 40014243 -202650110 + L1PB2 LINE L1 5465 5998 -153 2181 115 0 14 chr1 40014243 40014538 -202649815 + AluSx SINE Alu 1 291 -21 4206 103 39 15 chr1 40014538 40014696 -202649657 + L1PB2 LINE L1 5998 6151 0 429 237 11 0 chr1 40014953 40015046 -202649307 + L2 LINE L2 3220 3313 0 584 328 132 14 chr1 40015072 40015429 -202648924 + L1MC/D LINE L1 4875 5273 -873 458 324 108 17 chr1 40015437 40015900 -202648453 + L1MC/D LINE L1 5285 5789 -2019 1753 213 75 19 chr1 40015902 40016249 -202648104 - Charlie4a DNA MER1_type -1454 507 126 2246 176 112 4 chr1 40016249 40016704 -202647649 - MLT1D LTR MaLR 0 505 2 1753 213 75 19 chr1 40016704 40016825 -202647528 - Charlie4a DNA MER1_type -1835 126 13 361 284 9 9 chr1 40016831 40016947 -202647406 - L1ME LINE L1 -528 5593 5478 253 214 36 0 chr1 40016947 40017003 -202647350 + GA-rich Low_complexity Low_complexity 3 60 0 2292 110 3 0 chr1 40017073 40017374 -202646979 - AluSg SINE Alu -5 305 4 989 224 22 22 chr1 40017437 40017660 -202646693 - MER58A DNA MER1_type 0 224 2 1435 171 55 7 chr1 40017669 40017978 -202646375 - MER33 DNA MER1_type 0 324 1 405 358 50 39 chr1 40018009 40018288 -202646065 - HAL1b LINE L1 -969 379 98 298 271 43 58 chr1 40018720 40018927 -202645426 - MLT1H LTR MaLR -237 312 109 2145 116 7 0 chr1 40018971 40019264 -202645089 + AluY SINE Alu 1 295 -16 945 247 31 9 chr1 40019277 40019616 -202644737 + L1ME1 LINE L1 5427 5969 -197 264 310 23 23 chr1 40021204 40021333 -202643020 - L1ME LINE L1 -417 5704 5576 639 283 92 33 chr1 40021476 40021780 -202642573 - MLT1K LTR MaLR -159 429 108 228 308 0 15 chr1 40022679 40022748 -202641605 + C-rich Low_complexity Low_complexity 1 67 0 304 340 32 19 chr1 40023278 40023434 -202640919 - MIR SINE MIR -17 245 88 437 256 0 73 chr1 40023521 40023712 -202640641 + G-rich Low_complexity Low_complexity 1 177 0 366 304 128 7 chr1 40024178 40024326 -202640027 + MIR SINE MIR 76 241 -21 1051 240 66 48 chr1 40024394 40024504 -202639849 - LTR16A LTR ERVL -96 354 247 585 229 9 0 chr1 40024504 40024613 -202639740 + MER81 DNA DNA 5 114 0 1051 240 66 48 chr1 40024613 40024835 -202639518 - LTR16A LTR ERVL -203 247 16 981 233 52 4 chr1 40025237 40025469 -202638884 - MIR SINE MIR 0 262 20 330 266 266 0 chr1 40025614 40025742 -202638611 - MIR SINE MIR -28 234 73 1644 250 43 41 chr1 40025744 40025812 -202638541 - MLT1H1 LTR MaLR 0 555 489 6455 30 3 0 chr1 40025812 40026557 -202637796 + L1PA4 LINE L1 5409 6155 0 1644 250 43 41 chr1 40026557 40027042 -202637311 - MLT1H1 LTR MaLR -66 489 1 183 311 182 0 chr1 40027515 40027663 -202636690 + L2 LINE L2 2711 2885 -429 354 120 40 0 chr1 40027754 40027829 -202636524 + GA-rich Low_complexity Low_complexity 2 79 0 375 262 65 12 chr1 40027831 40027999 -202636354 + MLT1K LTR MaLR 395 571 -17 266 196 18 0 chr1 40028116 40028172 -202636181 - MIR SINE MIR -55 153 97 483 251 29 18 chr1 40028555 40028726 -202635627 + L2 LINE L2 2861 3033 -239 2113 106 0 3 chr1 40028730 40029022 -202635331 - AluSg SINE Alu -19 291 1 315 208 104 0 chr1 40029046 40029123 -202635230 - L2 LINE L2 -1 3312 3228 486 212 0 0 chr1 40029170 40029335 -202635018 + (CA)n Simple_repeat Simple_repeat 2 166 0 612 186 0 0 chr1 40029381 40029558 -202634795 + (CA)n Simple_repeat Simple_repeat 2 178 0 434 210 0 6 chr1 40029578 40029759 -202634594 + (CA)n Simple_repeat Simple_repeat 1 180 0 326 300 86 36 chr1 40029789 40029929 -202634424 - L2 LINE L2 -221 3092 2946 2958 99 67 2 chr1 40030091 40030526 -202633827 - L1PA11 LINE L1 0 6174 5712 3020 72 16 11 chr1 40030526 40030968 -202633385 + L1PA11 LINE L1 5268 5711 -463 1049 315 129 6 chr1 40030968 40031517 -202632836 - L2 LINE L2 -569 2745 2129 635 281 22 6 chr1 40031602 40031780 -202632573 - MLT1A1 LTR MaLR -4 463 283 499 290 99 48 chr1 40032471 40032785 -202631568 - L2 LINE L2 0 3313 2984 228 67 0 0 chr1 40033319 40033349 -202631004 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 664 284 50 20 chr1 40033500 40033701 -202630652 + MER63A DNA MER1_type 3 209 -1 880 291 8 23 chr1 40033802 40034060 -202630293 + MIR SINE MIR 2 255 -7 647 226 51 0 chr1 40034108 40034285 -202630068 + L1M4 LINE L1 2375 2560 -3586 3920 29 0 0 chr1 40034312 40034760 -202629593 - L1PA3 LINE L1 0 6155 5708 513 250 0 0 chr1 40036360 40036532 -202627821 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 307 287 111 0 chr1 40036637 40036745 -202627608 + MIR SINE MIR 2 121 -141 1441 255 71 15 chr1 40037022 40037489 -202626864 + L2 LINE L2 2821 3313 0 438 263 117 0 chr1 40038000 40038137 -202626216 + L2 LINE L2 2926 3078 -235 463 287 30 30 chr1 40038214 40038381 -202625972 - MIR SINE MIR -76 186 20 1510 179 51 16 chr1 40039327 40039408 -202624945 - MER33 DNA MER1_type -2261 324 247 2353 97 0 0 chr1 40039408 40039717 -202624636 + AluSq SINE Alu 1 309 -4 1510 179 51 16 chr1 40039717 40039948 -202624405 - MER33 DNA MER1_type -2338 247 1 961 233 92 12 chr1 40040041 40040281 -202624072 + MLT1I LTR MaLR 14 272 -137 805 206 70 53 chr1 40040308 40040536 -202623817 - MLT1A1 LTR MaLR -133 232 1 180 205 26 0 chr1 40041896 40041923 -202622430 + MIR SINE MIR 66 93 -169 466 276 41 40 chr1 40041923 40042074 -202622279 + MIR SINE MIR 3 152 -61 491 281 45 13 chr1 40043216 40043425 -202620928 - MIR SINE MIR -4 258 41 230 241 19 0 chr1 40045016 40045070 -202619283 + MER63 DNA MER1_type 1 681 -381 2127 121 0 6 chr1 40045077 40045391 -202618962 + AluSx SINE Alu 1 312 0 1505 172 54 34 chr1 40045412 40045766 -202618587 + MER63 DNA MER1_type 674 1034 -28 294 316 105 0 chr1 40045802 40045916 -202618437 + L2 LINE L2 3188 3313 0 265 77 58 19 chr1 40046050 40046102 -202618251 + GA-rich Low_complexity Low_complexity 3 56 0 368 266 0 0 chr1 40046138 40046217 -202618136 + MLT1I LTR MaLR 370 448 -57 420 116 0 14 chr1 40046255 40046324 -202618029 + MLT1D LTR MaLR 438 505 0 2775 99 27 10 chr1 40046768 40047180 -202617173 - L1PA14 LINE L1 0 6161 5743 875 78 0 63 chr1 40047403 40047545 -202616808 - L1PA14 LINE L1 -409 5752 5620 700 254 85 34 chr1 40047728 40047964 -202616389 - MIR SINE MIR 0 262 15 294 210 16 0 chr1 40047991 40048053 -202616300 + MIR SINE MIR 117 179 -83 580 261 84 4 chr1 40048842 40049051 -202615302 + MIR SINE MIR 25 247 -15 263 327 87 13 chr1 40049454 40049604 -202614749 - MIR3 SINE MIR -9 199 39 433 232 94 66 chr1 40050197 40050587 -202613766 - LTR16A1 LTR ERVL -9 448 17 343 272 131 6 chr1 40050749 40050857 -202613496 - MIR SINE MIR -86 122 23 573 305 126 20 chr1 40051585 40051975 -202612378 + MLT1J2 LTR MaLR 20 450 0 664 269 6 0 chr1 40051980 40052140 -202612213 - MIR SINE MIR -12 250 90 226 143 0 71 chr1 40052144 40052186 -202612167 - L1M1 LINE L1 -5981 1584 1546 326 285 65 47 chr1 40052977 40053154 -202611199 + MIR SINE MIR 12 190 -72 275 241 269 19 chr1 40053976 40054084 -202610269 - MIR SINE MIR -55 153 19 338 299 136 16 chr1 40054151 40054335 -202610018 - MIR SINE MIR -12 250 45 396 376 45 5 chr1 40055326 40055528 -202608825 + MIR SINE MIR 36 245 -17 21 0 0 0 chr1 40055552 40055573 -202608780 + AT_rich Low_complexity Low_complexity 1 21 0 833 153 0 0 chr1 40055573 40055697 -202608656 - AluJb SINE Alu -188 124 1 504 218 35 75 chr1 40056481 40056591 -202607762 + MIR SINE MIR 35 137 -125 1383 287 117 2 chr1 40056591 40057027 -202607326 + LTR16C LTR ERVL 3 488 -3 504 218 35 75 chr1 40057027 40057090 -202607263 + MIR SINE MIR 137 201 -61 224 252 118 72 chr1 40057761 40057948 -202606405 - MIR3 SINE MIR -59 203 9 946 154 6 0 chr1 40059001 40059157 -202605196 + FRAM SINE Alu 1 154 -22 203 255 0 0 chr1 40059177 40059228 -202605125 - MIR SINE MIR -193 69 19 228 143 0 0 chr1 40059887 40059929 -202604424 + (GA)n Simple_repeat Simple_repeat 1 42 0 630 314 39 13 chr1 40060428 40060657 -202603696 - MIR SINE MIR -3 259 25 1314 105 2 4 chr1 40060658 40061461 -202602892 + (TGGA)n Simple_repeat Simple_repeat 1 844 -184 234 116 0 0 chr1 40061461 40061504 -202602849 + (TATG)n Simple_repeat Simple_repeat 1 43 0 1314 105 2 4 chr1 40061504 40061510 -202602843 + (TGGA)n Simple_repeat Simple_repeat 844 1028 0 1296 84 0 0 chr1 40061510 40061689 -202602664 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1494 53 0 0 chr1 40061842 40062105 -202602248 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 227 258 0 15 chr1 40062457 40062523 -202601830 + MLT1K LTR MaLR 186 250 -338 235 303 13 0 chr1 40062646 40062722 -202601631 + MIR SINE MIR 186 262 0 229 104 0 42 chr1 40065349 40065397 -202598956 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 146 0 21 chr1 40066531 40066579 -202597774 + (CA)n Simple_repeat Simple_repeat 1 47 0 226 262 33 0 chr1 40067686 40067747 -202596606 + (CATG)n Simple_repeat Simple_repeat 4 66 0 209 195 0 0 chr1 40067957 40067998 -202596355 + (CA)n Simple_repeat Simple_repeat 1 41 0 1086 271 118 30 chr1 40070997 40071465 -202592888 - L2 LINE L2 -1 3312 2804 2130 108 13 0 chr1 40071502 40071807 -202592546 - AluSc SINE Alu 0 309 1 586 291 25 80 chr1 40071865 40072192 -202592161 - L1ME LINE L1 -334 5787 5479 526 286 28 28 chr1 40072346 40072524 -202591829 + MER5B DNA MER1_type 1 178 0 364 178 0 84 chr1 40072599 40072706 -202591647 - L1MC5 LINE L1 -30 7931 7834 622 296 65 0 chr1 40072706 40072953 -202591400 - L2 LINE L2 -567 2747 2485 2408 77 3 0 chr1 40073735 40074045 -202590308 + AluSp SINE Alu 3 313 0 183 310 103 11 chr1 40074544 40074631 -202589722 - MIR SINE MIR -72 136 42 1017 260 29 0 chr1 40074698 40074944 -202589409 - MIR SINE MIR -8 254 2 1835 252 117 19 chr1 40076350 40076890 -202587463 + MLT1E LTR MaLR 1 593 0 620 138 9 0 chr1 40077205 40077321 -202587032 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 374 212 10 0 chr1 40077407 40077506 -202586847 + (TCCA)n Simple_repeat Simple_repeat 2 101 0 205 241 0 35 chr1 40077516 40077574 -202586779 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 619 283 83 5 chr1 40079049 40079254 -202585099 + MIR SINE MIR 30 250 -12 225 207 17 35 chr1 40079277 40079335 -202585018 + MIR SINE MIR 97 153 -109 277 247 47 0 chr1 40079366 40079451 -202584902 - MER102b DNA MER1_type -1 340 252 339 319 0 9 chr1 40079593 40079706 -202584647 - MIR SINE MIR 0 262 151 414 340 45 15 chr1 40079851 40080051 -202584302 - MIR SINE MIR -25 237 32 217 177 65 16 chr1 40081037 40081099 -202583254 - L2 LINE L2 -4 3309 3245 1113 251 0 15 chr1 40081177 40081436 -202582917 + MIR SINE MIR 8 262 0 204 270 44 66 chr1 40081561 40081698 -202582655 + MIR3 SINE MIR 6 139 -69 333 309 7 27 chr1 40082476 40082625 -202581728 + (CA)n Simple_repeat Simple_repeat 1 146 0 205 185 31 0 chr1 40082634 40082699 -202581654 + (CATA)n Simple_repeat Simple_repeat 2 68 0 235 355 0 0 chr1 40082716 40082823 -202581530 + (CA)n Simple_repeat Simple_repeat 2 108 0 293 367 0 17 chr1 40082924 40083104 -202581249 + (CA)n Simple_repeat Simple_repeat 2 178 0 979 177 10 56 chr1 40083697 40083829 -202580524 + MER5A DNA MER1_type 1 123 -66 2069 101 30 0 chr1 40083829 40084127 -202580226 - AluSg SINE Alu -3 307 1 979 177 10 56 chr1 40084127 40084192 -202580161 + MER5A DNA MER1_type 123 189 0 512 296 96 6 chr1 40084196 40084404 -202579949 + MIR SINE MIR 23 245 -17 1110 153 11 16 chr1 40085473 40085662 -202578691 + MER5A DNA MER1_type 1 188 -1 325 289 31 0 chr1 40085750 40085847 -202578506 + MIR SINE MIR 23 122 -86 226 315 45 11 chr1 40086687 40086776 -202577577 + L2 LINE L2 3206 3297 -16 216 294 132 48 chr1 40087215 40087443 -202576910 + L2 LINE L2 2419 2665 -649 609 324 54 22 chr1 40088117 40088488 -202575865 + L1MC4a LINE L1 5569 5951 -1857 897 264 41 41 chr1 40091209 40091270 -202573083 + MER102b DNA MER1_type 27 87 -1341 2523 55 3 3 chr1 40091270 40091580 -202572773 + AluY SINE Alu 1 310 -1 897 264 41 41 chr1 40091580 40091833 -202572520 + MER102b DNA MER1_type 86 341 0 492 239 46 0 chr1 40092256 40092386 -202571967 + MIR SINE MIR 46 181 -81 313 325 208 0 chr1 40093260 40093414 -202570939 + MIR SINE MIR 69 254 -8 221 333 128 0 chr1 40094378 40094480 -202569873 - L2 LINE L2 -17 3255 3141 1900 155 3 19 chr1 40094800 40095117 -202569236 + AluJb SINE Alu 1 312 0 411 317 0 0 chr1 40095939 40096040 -202568313 - L2 LINE L2 -38 3234 3134 203 246 49 0 chr1 40096512 40096573 -202567780 - L2 LINE L2 -63 3209 3146 285 341 0 0 chr1 40096584 40096669 -202567684 + L3 LINE CR1 1490 1574 -3 340 262 84 89 chr1 40096707 40096749 -202567604 - MARNA DNA Mariner -55 531 490 1746 162 87 6 chr1 40096749 40097070 -202567283 + MER7A DNA MER2_type 1 345 -1 340 262 84 89 chr1 40097070 40097229 -202567124 - MARNA DNA Mariner -96 490 331 247 139 0 174 chr1 40097725 40097811 -202566542 - MIR3 SINE MIR 0 208 138 286 351 89 12 chr1 40098577 40098745 -202565608 - MIR SINE MIR -78 184 4 1681 199 36 36 chr1 40098753 40098941 -202565412 + MLT1C LTR MaLR 1 188 -279 2330 102 0 3 chr1 40098941 40099254 -202565099 + AluSx SINE Alu 1 312 0 1681 199 36 36 chr1 40099254 40099456 -202564897 + MLT1C LTR MaLR 187 391 -76 414 316 102 36 chr1 40099971 40100038 -202564315 + L2 LINE L2 2749 2810 -503 1119 211 0 28 chr1 40100038 40100251 -202564102 + MER3 DNA MER1_type 1 207 -2 414 316 102 36 chr1 40100251 40100711 -202563642 + L2 LINE L2 2810 3313 0 417 302 8 8 chr1 40101422 40101551 -202562802 + L2 LINE L2 3183 3311 -2 428 231 104 66 chr1 40102459 40102641 -202561712 + L2 LINE L2 3125 3313 0 248 345 88 25 chr1 40103323 40103561 -202560792 + L2 LINE L2 2988 3240 -32 581 333 28 5 chr1 40106520 40106733 -202557620 - MIR SINE MIR -16 246 29 250 288 18 54 chr1 40107806 40107917 -202556436 - MIR SINE MIR -66 196 90 21 0 0 0 chr1 40107951 40107972 -202556381 + AT_rich Low_complexity Low_complexity 1 21 0 758 178 94 28 chr1 40108001 40108181 -202556172 - MIR SINE MIR -58 204 13 488 230 9 9 chr1 40108538 40108651 -202555702 + MIR SINE MIR 102 214 -48 225 258 113 52 chr1 40108739 40108836 -202555517 - MIR SINE MIR -24 238 136 1478 157 0 61 chr1 40108836 40109116 -202555237 + AluJo SINE Alu 1 263 -49 363 321 104 0 chr1 40109139 40109273 -202555080 - MIR SINE MIR -112 150 3 480 230 45 7 chr1 40109340 40109479 -202554874 - MIR SINE MIR -56 152 36 210 302 105 12 chr1 40110588 40110674 -202553679 - MIR SINE MIR -166 96 3 1079 126 11 6 chr1 40110685 40110860 -202553493 + MER5A DNA MER1_type 9 184 -5 394 293 24 36 chr1 40110711 40110878 -202553475 - MER5A DNA MER1_type -23 166 2 * 430 300 65 12 chr1 40111130 40111300 -202553053 - MIR SINE MIR -63 199 21 280 264 120 48 chr1 40111425 40111592 -202552761 - L2 LINE L2 -539 2775 2597 557 302 40 23 chr1 40111746 40111983 -202552370 - MIR SINE MIR -17 245 3 233 309 338 0 chr1 40112806 40112945 -202551408 - MER91A DNA MER1_type -10 186 1 589 193 21 14 chr1 40113026 40113166 -202551187 + MIR SINE MIR 122 262 0 507 295 82 38 chr1 40116045 40116228 -202548125 - MIR SINE MIR -69 193 3 392 341 105 54 chr1 40116621 40117290 -202547063 - L1M4 LINE L1 -1208 1299 801 183 167 0 0 chr1 40118924 40118966 -202545387 + (CAT)n Simple_repeat Simple_repeat 3 44 0 583 262 64 16 chr1 40120156 40120343 -202544010 + MER117 DNA MER1_type 1 196 -1 247 303 0 0 chr1 40120429 40120495 -202543858 + L3 LINE CR1 1416 1481 -96 418 291 242 28 chr1 40121464 40121790 -202542563 - L3 LINE CR1 -11 1566 1171 679 284 108 0 chr1 40122615 40122837 -202541516 + MIR SINE MIR 14 259 -3 787 254 73 5 chr1 40122936 40123141 -202541212 + MER58A DNA MER1_type 1 219 -5 292 298 30 38 chr1 40123218 40123396 -202540957 - MIR SINE MIR -63 145 15 383 278 0 0 chr1 40124247 40124337 -202540016 - MIR SINE MIR -65 197 108 744 280 40 13 chr1 40125365 40125590 -202538763 - MIR SINE MIR -1 261 31 375 249 144 52 chr1 40125935 40126108 -202538245 - MIR SINE MIR -73 189 1 215 323 89 8 chr1 40126281 40126405 -202537948 + L2 LINE L2 3180 3313 0 420 313 121 7 chr1 40126594 40126799 -202537554 - MIR SINE MIR -8 254 28 195 162 0 27 chr1 40126778 40126815 -202537538 + MIR SINE MIR 117 152 -110 * 481 264 28 7 chr1 40127084 40127228 -202537125 - MIR SINE MIR -43 219 73 310 242 197 7 chr1 40127317 40127464 -202536889 - MIR3 SINE MIR -63 145 15 232 288 110 34 chr1 40128037 40128155 -202536198 + L2 LINE L2 3125 3251 -21 255 224 0 17 chr1 40128165 40128223 -202536130 + GA-rich Low_complexity Low_complexity 1 57 0 1527 265 30 16 chr1 40129244 40129681 -202534672 + LTR37B LTR ERV1 21 463 -5 465 299 34 34 chr1 40130360 40130537 -202533816 - MIR SINE MIR -39 223 47 924 237 0 62 chr1 40130544 40130768 -202533585 - MER63A DNA MER1_type 0 210 1 184 302 104 10 chr1 40130872 40130968 -202533385 - MER5A DNA MER1_type -70 119 15 474 234 62 35 chr1 40131114 40131259 -202533094 + MIR SINE MIR 90 238 -24 678 277 64 34 chr1 40131411 40131646 -202532707 - MIR SINE MIR -11 251 10 192 314 40 93 chr1 40131612 40131860 -202532493 + L2 LINE L2 2575 2809 -505 * 324 267 28 139 chr1 40132053 40132233 -202532120 + L2 LINE L2 3004 3163 -109 329 121 35 0 chr1 40132386 40132444 -202531909 + MADE1 DNA Mariner 2 61 -19 23 0 0 0 chr1 40133253 40133276 -202531077 + AT_rich Low_complexity Low_complexity 1 23 0 1569 167 13 23 chr1 40134288 40134594 -202529759 - AluJo SINE Alu -9 303 1 264 313 135 47 chr1 40134761 40134953 -202529400 + MIR SINE MIR 8 216 -46 827 202 110 44 chr1 40134973 40135201 -202529152 - MIR SINE MIR -14 248 6 243 125 0 0 chr1 40135250 40135290 -202529063 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 312 256 100 0 chr1 40135292 40135382 -202528971 - L2 LINE L2 -1 3271 3173 274 316 94 17 chr1 40135404 40135521 -202528832 + L2 LINE L2 3147 3272 0 281 284 108 0 chr1 40135734 40135836 -202528517 - MER20B DNA MER1_type -575 208 96 721 253 96 0 chr1 40136912 40137090 -202527263 + MER63A DNA MER1_type 13 207 -3 376 309 29 7 chr1 40137101 40137237 -202527116 + L2 LINE L2 2921 3059 -213 698 279 150 0 chr1 40137760 40137986 -202526367 - MIR SINE MIR -1 261 2 311 284 18 46 chr1 40138389 40138498 -202525855 - MER5A DNA MER1_type 0 189 84 234 220 92 73 chr1 40138421 40138530 -202525823 + MER5A DNA MER1_type 44 154 -35 * 341 308 8 0 chr1 40138934 40139054 -202525299 - MER103 DNA DNA -10 156 36 408 284 110 7 chr1 40139101 40139256 -202525097 + MIR SINE MIR 32 202 -60 209 320 128 0 chr1 40139508 40139633 -202524720 - MIR SINE MIR -72 190 50 431 274 89 0 chr1 40140380 40140515 -202523838 - MIR SINE MIR -78 184 38 191 333 49 0 chr1 40141417 40141498 -202522855 + L2 LINE L2 3004 3088 -225 193 279 0 33 chr1 40141583 40141644 -202522709 + L2 LINE L2 3240 3298 -15 379 310 44 18 chr1 40142068 40142181 -202522172 + MLT1K LTR MaLR 53 168 -420 349 221 23 107 chr1 40142382 40142513 -202521840 + MLT1K LTR MaLR 432 551 -37 306 284 67 72 chr1 40143458 40143652 -202520701 - MIR SINE MIR -50 212 20 233 146 73 0 chr1 40143754 40143795 -202520558 + MLT1L LTR MaLR 1 44 -571 1094 216 178 53 chr1 40143801 40144258 -202520095 + MLT1H LTR MaLR 12 615 -9 397 277 108 14 chr1 40144325 40144473 -202519880 + MLT1L LTR MaLR 122 283 -332 1379 203 69 3 chr1 40144508 40144799 -202519554 + AluJo SINE Alu 1 310 -2 524 226 95 0 chr1 40144914 40145051 -202519302 + MLT1L LTR MaLR 466 615 0 190 158 0 35 chr1 40145290 40145347 -202519006 + (AATTG)n Simple_repeat Simple_repeat 4 58 0 300 332 84 34 chr1 40145791 40146237 -202518116 + L2 LINE L2 2600 3060 -253 264 100 0 0 chr1 40146463 40146503 -202517850 + (CAATC)n Simple_repeat Simple_repeat 4 43 0 181 244 0 0 chr1 40146771 40146812 -202517541 + L2 LINE L2 3223 3263 -9 215 277 73 37 chr1 40146905 40147061 -202517292 - MIR3 SINE MIR -4 204 46 447 261 15 23 chr1 40147092 40147222 -202517131 + MIR SINE MIR 10 138 -124 1538 162 8 4 chr1 40147629 40147895 -202516458 + AluJo SINE Alu 6 272 -40 435 197 146 80 chr1 40148499 40148636 -202515717 - MIR SINE MIR -110 152 7 286 229 16 0 chr1 40149435 40149496 -202514857 + MIR SINE MIR 109 170 -92 182 259 19 19 chr1 40149590 40149644 -202514709 + L2 LINE L2 2557 2610 -704 2007 254 105 27 chr1 40149686 40150635 -202513718 + L2 LINE L2 2223 3256 -57 249 323 96 26 chr1 40151015 40151244 -202513109 + MLT1K LTR MaLR 185 429 -159 2674 238 58 8 chr1 40151528 40152184 -202512169 - MER115 DNA AcHobo 0 693 5 316 286 7 48 chr1 40153498 40153645 -202510708 + (ATGGTG)n Simple_repeat Simple_repeat 6 146 0 389 356 11 0 chr1 40153752 40153929 -202510424 + (TGG)n Simple_repeat Simple_repeat 1 179 0 395 217 38 120 chr1 40155059 40155243 -202509110 - L1ME3 LINE L1 -1 6165 5994 609 262 39 15 chr1 40155283 40155550 -202508803 - L1ME3 LINE L1 -237 5884 5530 854 259 40 15 chr1 40155552 40155876 -202508477 + L1ME3A LINE L1 4943 5274 -872 2086 112 7 3 chr1 40155891 40156185 -202508168 + AluSq SINE Alu 5 299 -14 276 53 0 0 chr1 40156205 40156243 -202508110 + (GA)n Simple_repeat Simple_repeat 1 38 0 1744 257 69 16 chr1 40156257 40156864 -202507489 + L1ME3A LINE L1 5434 6072 -98 339 278 111 32 chr1 40156984 40157110 -202507243 + L2 LINE L2 3177 3312 -1 224 208 104 0 chr1 40157151 40157228 -202507125 + L2 LINE L2 2965 3049 -223 337 283 91 59 chr1 40157592 40157888 -202506465 - L2 LINE L2 -194 3078 2776 1961 120 21 3 chr1 40158599 40158890 -202505463 + AluSx SINE Alu 1 296 -16 491 161 87 44 chr1 40159048 40159206 -202505147 - MIR SINE MIR -22 240 28 802 288 82 71 chr1 40159667 40160421 -202503932 + L1MB3 LINE L1 3606 4350 -1771 1855 128 0 14 chr1 40160421 40160730 -202503623 - AluSq SINE Alu 0 310 6 802 288 82 71 chr1 40160730 40160766 -202503587 + L1MB3 LINE L1 4350 4384 -1737 672 230 0 15 chr1 40160766 40160901 -202503452 + FLAM_C SINE Alu 1 133 0 802 288 82 71 chr1 40160901 40162120 -202502233 + L1MB3 LINE L1 4384 5654 -467 1672 201 69 23 chr1 40162414 40162848 -202501505 - L1MB8 LINE L1 -1 6177 5724 12766 148 82 17 chr1 40162858 40165888 -202498465 + L1MCa LINE L1 12 4750 -1676 6369 85 28 56 chr1 40165887 40166902 -202497451 + L1MA2 LINE L1 5319 6304 0 * 3749 165 39 31 chr1 40166920 40167725 -202496628 + L1MCa LINE L1 4741 5551 -875 2099 145 23 20 chr1 40167738 40168132 -202496221 + L1MB3 LINE L1 5787 6181 -2 9481 202 36 28 chr1 40168143 40168769 -202495584 + L1MC1 LINE L1 2290 2909 -3424 469 198 0 0 chr1 40168769 40168855 -202495498 - FLAM_A SINE Alu -56 86 1 9481 202 36 28 chr1 40168855 40171214 -202493139 + L1MC1 LINE L1 2909 5274 -1059 1990 121 10 0 chr1 40171214 40171504 -202492849 - AluSx SINE Alu -19 293 1 9481 202 36 28 chr1 40171504 40172572 -202491781 + L1MC1 LINE L1 5274 6332 -1 596 226 38 6 chr1 40172703 40172862 -202491491 + L1ME4a LINE L1 5954 6117 -4 302 313 77 19 chr1 40172898 40173106 -202491247 + L1ME4a LINE L1 5603 5822 -299 281 303 90 8 chr1 40173179 40173301 -202491052 + L1MC5 LINE L1 7796 7927 -34 570 266 67 47 chr1 40173430 40173921 -202490432 + L1ME4a LINE L1 4256 6121 0 572 217 132 29 chr1 40173939 40174211 -202490142 + L1ME4a LINE L1 5822 6121 0 418 261 122 32 chr1 40174668 40174865 -202489488 + MIR SINE MIR 52 260 -2 732 207 8 154 chr1 40174978 40175168 -202489185 - MER58A DNA MER1_type -2199 221 73 1278 183 10 24 chr1 40175168 40175463 -202488890 + L1MA4 LINE L1 6010 6300 0 732 207 8 154 chr1 40175463 40175518 -202488835 - MER58A DNA MER1_type -2347 73 12 998 235 34 97 chr1 40176257 40176669 -202487684 + LTR16A1 LTR ERVL 72 457 0 306 0 0 0 chr1 40177183 40177217 -202487136 + (TG)n Simple_repeat Simple_repeat 2 35 0 282 309 77 62 chr1 40177332 40177526 -202486827 - MIR SINE MIR 0 262 66 665 208 36 42 chr1 40177546 40177703 -202486650 - MER63A DNA MER1_type -1478 210 53 2175 114 0 7 chr1 40177703 40178009 -202486344 - AluSx SINE Alu -8 304 1 236 301 95 114 chr1 40179169 40179431 -202484922 - L2 LINE L2 0 3272 3016 593 237 14 0 chr1 40179705 40179844 -202484509 + MIR SINE MIR 70 210 -52 643 292 31 62 chr1 40180730 40181018 -202483335 + LTR16C LTR ERVL 211 489 -2 227 336 22 45 chr1 40181112 40181246 -202483107 + L2 LINE L2 3142 3272 0 483 214 99 15 chr1 40182755 40182886 -202481467 + MER103 DNA DNA 16 157 -9 250 259 0 0 chr1 40183505 40183559 -202480794 - L2 LINE L2 -1 3271 3218 354 293 14 82 chr1 40183622 40183830 -202480523 + L2 LINE L2 3120 3313 0 2214 119 76 18 chr1 40183938 40184281 -202480072 + THE1B LTR MaLR 2 364 0 11700 106 6 1 chr1 40184281 40185851 -202478502 + THE1B-int LTR MaLR 1 1578 -2 2167 119 102 15 chr1 40185853 40186188 -202478165 + THE1B LTR MaLR 1 364 0 328 218 11 0 chr1 40186627 40186714 -202477639 - MIR SINE MIR -44 218 131 361 283 57 44 chr1 40186878 40187037 -202477316 - MIR SINE MIR -19 243 83 258 32 0 0 chr1 40187274 40187305 -202477048 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 370 317 0 0 chr1 40187310 40187411 -202476942 - L2 LINE L2 -18 3295 3195 276 313 157 24 chr1 40187683 40187738 -202476615 - L2 LINE L2 -208 3064 3018 427 152 0 38 chr1 40187738 40187877 -202476476 - L1PA10 LINE L1 0 6168 6077 276 313 157 24 chr1 40187877 40187987 -202476366 - L2 LINE L2 -254 3018 2877 351 304 164 29 chr1 40188624 40188795 -202475558 + MIR SINE MIR 33 226 -36 270 235 47 12 chr1 40189569 40189654 -202474699 + MIR SINE MIR 2 89 -173 225 229 57 105 chr1 40189691 40189796 -202474557 + MIR SINE MIR 51 150 -112 206 359 33 11 chr1 40189893 40189985 -202474368 + MIR SINE MIR 164 257 -5 675 138 32 101 chr1 40190000 40190189 -202474164 + MER104 DNA MER2_type 1 176 -4 335 308 67 41 chr1 40191924 40192119 -202472234 + MIR3 SINE MIR 7 206 -2 200 299 11 0 chr1 40193253 40193340 -202471013 + (CA)n Simple_repeat Simple_repeat 2 89 0 256 344 7 40 chr1 40193363 40193514 -202470839 - MIR SINE MIR -11 251 106 241 348 0 13 chr1 40193547 40193702 -202470651 + (CA)n Simple_repeat Simple_repeat 2 154 0 2194 109 0 0 chr1 40194806 40195099 -202469254 - AluSg SINE Alu -17 293 1 287 241 0 81 chr1 40197270 40197357 -202466996 - L2 LINE L2 -195 3077 2998 735 271 83 17 chr1 40197371 40197611 -202466742 - MIR SINE MIR -3 259 4 327 247 0 0 chr1 40197944 40198017 -202466336 + MER103 DNA DNA 4 76 -90 2373 207 52 17 chr1 40198119 40198637 -202465716 - MLT1F LTR MaLR 0 542 7 336 215 149 0 chr1 40198829 40198936 -202465417 - MIR3 SINE MIR 0 208 86 564 300 80 21 chr1 40199747 40200034 -202464319 + L2 LINE L2 2998 3301 -12 239 268 12 12 chr1 40200763 40200845 -202463508 - L1M3de LINE L1 -6155 498 417 240 260 110 0 chr1 40201217 40201290 -202463063 + L2 LINE L2 3197 3277 -36 475 320 53 20 chr1 40202752 40202996 -202461357 + L2 LINE L2 2813 3064 -208 524 283 7 26 chr1 40203513 40203665 -202460688 + L2 LINE L2 3165 3313 0 215 213 21 0 chr1 40203931 40203978 -202460375 + C-rich Low_complexity Low_complexity 1 48 0 504 285 29 70 chr1 40204909 40205151 -202459202 + L2 LINE L2 3010 3241 -72 386 342 149 32 chr1 40205192 40205634 -202458719 + L3 LINE CR1 344 837 -740 200 304 101 0 chr1 40206016 40206085 -202458268 - L2 LINE L2 -58 3214 3139 249 391 31 8 chr1 40206382 40206510 -202457843 - L2 LINE L2 -6 3266 3136 393 288 52 82 chr1 40207152 40207458 -202456895 + MLT1K LTR MaLR 183 479 -109 425 257 22 22 chr1 40208376 40208512 -202455841 - L2 LINE L2 -19 3294 3159 205 231 19 0 chr1 40208565 40208617 -202455736 - MIR SINE MIR -65 143 91 325 277 17 25 chr1 40208794 40208913 -202455440 - MER94 DNA DNA -1 133 16 447 308 82 6 chr1 40210090 40210249 -202454104 - MIR SINE MIR -43 219 49 498 270 30 55 chr1 40211395 40211595 -202452758 - MIR SINE MIR -29 233 39 444 202 12 0 chr1 40211922 40212006 -202452347 + MER96 DNA MER1_type? 91 175 0 185 226 19 0 chr1 40212879 40212932 -202451421 + GA-rich Low_complexity Low_complexity 3 56 0 246 322 41 48 chr1 40213160 40213306 -202451047 + MIR SINE MIR 112 256 -6 199 302 0 0 chr1 40213866 40213919 -202450434 - MIR3 SINE MIR -9 199 147 421 302 36 7 chr1 40214101 40214240 -202450113 - MIR SINE MIR -62 200 58 289 306 36 63 chr1 40215097 40215208 -202449145 - MIR SINE MIR -50 158 50 280 319 0 0 chr1 40215444 40215535 -202448818 + GA-rich Low_complexity Low_complexity 3 93 0 439 283 208 23 chr1 40215949 40216257 -202448096 + L2 LINE L2 2949 3313 0 218 307 99 0 chr1 40216883 40216984 -202447369 - L2 LINE L2 -28 3285 3175 615 310 54 0 chr1 40217899 40217978 -202446375 - MIR SINE MIR 0 262 189 2033 113 19 16 chr1 40217978 40218288 -202446065 - AluSx SINE Alu -1 311 1 615 310 54 0 chr1 40218288 40218450 -202445903 - MIR SINE MIR -73 189 8 298 353 39 20 chr1 40218519 40218672 -202445681 - MIR SINE MIR -59 203 48 211 252 0 29 chr1 40220110 40220213 -202444140 + GA-rich Low_complexity Low_complexity 1 100 0 379 231 115 9 chr1 40220451 40220579 -202443774 - MIR SINE MIR -68 140 4 183 288 236 19 chr1 40220599 40220802 -202443551 + L2 LINE L2 2996 3248 -24 207 0 0 0 chr1 40220802 40220825 -202443528 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 298 296 0 20 chr1 40220847 40220945 -202443408 + MIR SINE MIR 48 143 -119 652 278 144 21 chr1 40220983 40221116 -202443237 - L2 LINE L2 -2 3311 3196 231 36 0 0 chr1 40221116 40221144 -202443209 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 652 278 144 21 chr1 40221144 40221344 -202443009 - L2 LINE L2 -117 3196 2937 182 235 88 78 chr1 40221497 40221599 -202442754 - L2 LINE L2 0 3272 3170 225 318 115 30 chr1 40221732 40221973 -202442380 - L2 LINE L2 -252 3061 2606 265 354 0 0 chr1 40223087 40223183 -202441170 + (CA)n Simple_repeat Simple_repeat 1 96 0 269 294 34 25 chr1 40225142 40225261 -202439092 + L1MC5 LINE L1 7810 7929 -32 228 391 23 0 chr1 40228783 40228870 -202435483 + L2 LINE L2 3224 3312 -1 204 270 40 0 chr1 40229824 40229898 -202434455 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 233 276 40 0 chr1 40230001 40230077 -202434276 + MIR3 SINE MIR 112 190 -18 325 252 36 36 chr1 40230222 40230333 -202434020 - L2 LINE L2 -25 3247 3137 333 68 0 0 chr1 40231033 40231077 -202433276 + (GA)n Simple_repeat Simple_repeat 1 44 0 1073 48 0 0 chr1 40231186 40231312 -202433041 + AluSg/x SINE Alu 174 299 -11 599 277 53 3 chr1 40231863 40232074 -202432279 - MIR SINE MIR -20 242 23 297 358 75 15 chr1 40232912 40233113 -202431240 - MIR SINE MIR -1 261 49 447 303 8 0 chr1 40233504 40233623 -202430730 + MIR3 SINE MIR 55 174 -34 334 290 9 28 chr1 40235277 40235384 -202428969 - L2 LINE L2 0 3272 3168 291 338 0 0 chr1 40235489 40235566 -202428787 - MIR SINE MIR -174 88 12 443 265 204 5 chr1 40236097 40236308 -202428045 + MIR SINE MIR 9 261 -1 180 77 0 0 chr1 40236603 40236629 -202427724 + (TC)n Simple_repeat Simple_repeat 1 26 0 414 0 0 0 chr1 40236630 40236676 -202427677 + (TG)n Simple_repeat Simple_repeat 2 47 0 299 231 39 13 chr1 40237885 40237963 -202426390 - L2 LINE L2 0 3313 3234 196 254 0 0 chr1 40238907 40238962 -202425391 + L2 LINE L2 3217 3271 -1 369 279 73 7 chr1 40239805 40239941 -202424412 + MLT1K LTR MaLR 436 580 -8 457 265 61 7 chr1 40241078 40241225 -202423128 - MIR SINE MIR -47 215 61 280 347 57 6 chr1 40241643 40241819 -202422534 + L2 LINE L2 2849 3033 -239 2377 103 0 28 chr1 40241819 40242138 -202422215 - AluSx SINE Alu -2 310 1 428 293 73 50 chr1 40242367 40242626 -202421727 + LTR16C LTR ERVL 210 474 -17 550 113 0 0 chr1 40242652 40242732 -202421621 + MADE1 DNA Mariner 1 80 0 2379 146 17 21 chr1 40242819 40242926 -202421427 + L1MB4 LINE L1 5716 5822 -358 2466 78 0 7 chr1 40242926 40243232 -202421121 + AluY SINE Alu 1 304 -7 2379 146 17 21 chr1 40243232 40243589 -202420764 + L1MB4 LINE L1 5822 6178 -2 2150 122 3 13 chr1 40243698 40244002 -202420351 - AluY SINE Alu -10 301 1 277 306 108 32 chr1 40245509 40245666 -202418687 + MIR SINE MIR 34 202 -60 325 245 108 0 chr1 40245681 40245783 -202418570 - MER103 DNA DNA -1 165 53 1615 231 67 47 chr1 40246859 40247395 -202416958 - MLT1H LTR MaLR 0 549 3 535 350 38 25 chr1 40248546 40248860 -202415493 + L2 LINE L2 2660 2977 -337 193 227 120 13 chr1 40249237 40249312 -202415041 - MIR3 SINE MIR -10 198 116 366 224 152 24 chr1 40249485 40249610 -202414743 - MIR SINE MIR -120 142 2 379 294 63 7 chr1 40249895 40250038 -202414315 - MIR SINE MIR -79 183 33 302 264 14 0 chr1 40250171 40250243 -202414110 - L2 LINE L2 -3 3310 3238 219 319 14 0 chr1 40250856 40250928 -202413425 + MER5A DNA MER1_type 9 81 -108 789 234 159 0 chr1 40251857 40252071 -202412282 - MIR SINE MIR -10 252 5 304 254 0 0 chr1 40252238 40252305 -202412048 - L2 LINE L2 0 3313 3247 226 301 0 19 chr1 40252572 40252675 -202411678 + (CA)n Simple_repeat Simple_repeat 1 101 0 1132 129 0 20 chr1 40254672 40254919 -202409434 + (TCCA)n Simple_repeat Simple_repeat 1 242 0 428 341 59 45 chr1 40254931 40255218 -202409135 - L2 LINE L2 -17 3255 2965 1195 270 25 3 chr1 40255733 40256055 -202408298 - LTR16C LTR ERVL -11 480 152 2194 134 0 0 chr1 40256419 40256717 -202407636 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr1 40257782 40257803 -202406550 + (GGA)n Simple_repeat Simple_repeat 2 22 0 509 310 6 18 chr1 40258254 40258425 -202405928 - MIR SINE MIR -5 257 89 479 297 103 6 chr1 40259501 40259666 -202404687 + MIR SINE MIR 70 250 -12 275 270 48 46 chr1 40259936 40260062 -202404291 - MIR SINE MIR -61 147 20 514 274 72 11 chr1 40261120 40261330 -202403023 - MIR SINE MIR -3 259 2 859 166 25 0 chr1 40261676 40261833 -202402520 - FRAM SINE Alu -5 161 1 215 360 18 9 chr1 40261833 40261944 -202402409 + MIR SINE MIR 77 188 -74 1066 248 54 0 chr1 40262115 40262409 -202401944 + LTR16A LTR ERVL 90 399 -51 402 311 90 0 chr1 40262567 40262744 -202401609 + MIR SINE MIR 50 242 -20 636 244 102 11 chr1 40262817 40262993 -202401360 + MIR SINE MIR 69 260 -2 390 335 10 41 chr1 40263006 40263203 -202401150 - L3 LINE CR1 -471 1106 916 200 364 66 8 chr1 40263519 40263640 -202400713 - L3 LINE CR1 -805 772 645 188 367 100 17 chr1 40264618 40264738 -202399615 + MIR SINE MIR 81 210 -52 1026 168 97 10 chr1 40265251 40265447 -202398906 + MER20 DNA MER1_type 1 213 -6 390 287 0 9 chr1 40266338 40266446 -202397907 + L2 LINE L2 3175 3281 -32 186 71 0 0 chr1 40266455 40266483 -202397870 + (ACTG)n Simple_repeat Simple_repeat 4 31 0 291 342 68 0 chr1 40266796 40266913 -202397440 + L2 LINE L2 3139 3263 -9 288 299 97 52 chr1 40266977 40267111 -202397242 - MIR SINE MIR -15 247 108 357 24 0 0 chr1 40267386 40267428 -202396925 + (TG)n Simple_repeat Simple_repeat 2 43 0 1341 101 0 0 chr1 40268251 40268419 -202395934 + AluSg/x SINE Alu 131 298 -14 440 308 50 6 chr1 40268419 40268601 -202395752 + L2 LINE L2 3122 3311 -2 519 232 39 39 chr1 40268709 40268864 -202395489 - MIR SINE MIR 0 262 108 333 161 0 0 chr1 40268898 40268954 -202395399 - MIR SINE MIR -77 131 76 * 630 299 44 20 chr1 40268953 40269157 -202395196 - MIR SINE MIR -34 228 20 1378 208 17 10 chr1 40270101 40270395 -202393958 - LTR16C LTR ERVL -2 489 194 302 266 101 0 chr1 40270544 40270713 -202393640 + Charlie7 DNA MER1_type 2427 2612 0 1609 140 140 22 chr1 40271069 40271341 -202393012 - AluSg SINE Alu 0 310 7 364 327 37 12 chr1 40272592 40272754 -202391599 + MIR SINE MIR 54 219 -43 2177 191 38 109 chr1 40274302 40274960 -202389393 + L1ME1 LINE L1 5456 6066 -100 296 365 34 7 chr1 40275189 40275337 -202389016 + MIR SINE MIR 36 187 -75 240 238 105 38 chr1 40275340 40275445 -202388908 - L2 LINE L2 -18 3254 3143 475 166 223 36 chr1 40275501 40275640 -202388713 - MIR SINE MIR 0 262 98 1200 156 5 0 chr1 40275709 40275908 -202388445 + Tigger1 DNA MER2_type 170 369 -2049 * 11470 91 19 7 chr1 40275904 40277555 -202386798 + Tigger1 DNA MER2_type 748 2418 0 406 227 70 24 chr1 40277555 40277712 -202386641 - MIR SINE MIR -41 167 36 206 231 115 64 chr1 40278482 40278560 -202385793 + L2 LINE L2 3173 3254 -18 450 271 72 12 chr1 40278655 40278821 -202385532 + MER5B DNA MER1_type 3 178 0 219 291 144 14 chr1 40279212 40279448 -202384905 - L2 LINE L2 -336 2977 2703 272 152 0 0 chr1 40279468 40279525 -202384828 - L1MB5 LINE L1 0 6174 6126 1625 128 28 24 chr1 40279540 40279789 -202384564 - AluJo SINE Alu -33 279 30 5207 159 13 15 chr1 40279797 40281046 -202383307 - L1MB7 LINE L1 -47 6137 4889 2272 90 3 0 chr1 40281046 40281346 -202383007 + AluSp SINE Alu 1 301 -12 5207 159 13 15 chr1 40281346 40281610 -202382743 - L1MB7 LINE L1 -1295 4889 4626 839 297 9 0 chr1 40281783 40282005 -202382348 + MIR SINE MIR 4 227 -35 734 226 133 10 chr1 40282237 40282432 -202381921 - MIR SINE MIR -21 241 23 194 188 0 21 chr1 40282713 40282761 -202381592 + GA-rich Low_complexity Low_complexity 3 49 0 271 201 36 63 chr1 40284085 40284208 -202380145 + MIR SINE MIR 104 218 -44 213 39 0 0 chr1 40284358 40284384 -202379969 + (GA)n Simple_repeat Simple_repeat 2 27 0 329 346 58 6 chr1 40285537 40285693 -202378660 + MIR3 SINE MIR 36 199 -9 276 256 26 0 chr1 40286086 40286164 -202378189 - MIR SINE MIR -63 145 66 503 266 0 8 chr1 40287490 40287618 -202376735 - L2 LINE L2 0 3313 3187 204 311 66 8 chr1 40287632 40287754 -202376599 - L2 LINE L2 -473 2841 2713 503 271 7 20 chr1 40288593 40288755 -202375598 - MIR SINE MIR -62 146 13 857 223 47 33 chr1 40288940 40289155 -202375198 - MIR SINE MIR -28 234 17 199 241 0 74 chr1 40289396 40289450 -202374903 - L2 LINE L2 -13 3259 3210 600 245 45 20 chr1 40289977 40290177 -202374176 + MIR SINE MIR 20 224 -38 967 194 97 13 chr1 40290724 40290855 -202373498 + MIR SINE MIR 17 136 -126 288 0 0 0 chr1 40290855 40290887 -202373466 + (TAA)n Simple_repeat Simple_repeat 1 32 0 967 194 97 13 chr1 40290887 40290982 -202373371 + MIR SINE MIR 136 262 0 186 43 0 0 chr1 40291376 40291399 -202372954 + (TG)n Simple_repeat Simple_repeat 1 23 0 304 324 35 47 chr1 40291918 40292088 -202372265 + MIR SINE MIR 49 216 -46 304 256 56 22 chr1 40292217 40292307 -202372046 - MIR SINE MIR -168 94 2 192 316 0 0 chr1 40292447 40292504 -202371849 + MIR SINE MIR 82 138 -70 2757 22 0 0 chr1 40292508 40292821 -202371532 - AluYb8 SINE Alu -5 313 1 433 337 96 0 chr1 40292901 40293079 -202371274 + MIR SINE MIR 3 197 -65 215 273 18 0 chr1 40293107 40293162 -202371191 - MIR SINE MIR -29 233 178 523 242 163 0 chr1 40293195 40293348 -202371005 - MIR SINE MIR -51 211 34 232 239 0 0 chr1 40294348 40294394 -202369959 - L2 LINE L2 -17 3255 3210 312 267 58 70 chr1 40294496 40294672 -202369681 + MIR SINE MIR 45 214 -48 2302 107 53 28 chr1 40294748 40295103 -202369250 - THE1B LTR MaLR 0 364 1 839 311 131 16 chr1 40295676 40296119 -202368234 + L2 LINE L2 2819 3312 -1 213 327 0 0 chr1 40296120 40296172 -202368181 + polypurine Low_complexity Low_complexity 3 54 0 354 23 0 0 chr1 40296615 40296658 -202367695 + (TTTTC)n Simple_repeat Simple_repeat 5 47 0 485 110 11 0 chr1 40296665 40296756 -202367597 + (TC)n Simple_repeat Simple_repeat 1 92 0 292 280 76 51 chr1 40298031 40298149 -202366204 + MIR3 SINE MIR 36 156 -52 364 206 169 81 chr1 40298335 40298495 -202365858 - Charlie8 DNA MER1_type -1994 423 250 302 213 93 0 chr1 40298509 40298584 -202365769 - Charlie8 DNA MER1_type -2276 141 60 2013 140 3 3 chr1 40298713 40299020 -202365333 + AluSx SINE Alu 1 307 -5 1036 98 0 0 chr1 40299032 40299165 -202365188 + FLAM_C SINE Alu 1 133 0 2375 205 8 19 chr1 40299557 40300026 -202364327 + LTR31 LTR ERV1 141 604 -15 418 366 67 0 chr1 40300047 40300241 -202364112 - L3 LINE CR1 -128 1449 1243 23 33 0 0 chr1 40300621 40300651 -202363702 + AT_rich Low_complexity Low_complexity 1 30 0 266 266 0 0 chr1 40300811 40300875 -202363478 + L3b LINE CR1 1324 1387 -196 238 271 0 14 chr1 40301408 40301478 -202362875 + L2 LINE L2 3204 3272 0 300 27 0 0 chr1 40302872 40302909 -202361444 + (TG)n Simple_repeat Simple_repeat 1 37 0 234 0 0 0 chr1 40302908 40302934 -202361419 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 395 370 23 23 chr1 40304363 40304536 -202359817 + L3 LINE CR1 381 553 -1024 559 362 81 20 chr1 40304543 40304827 -202359526 - L2 LINE L2 0 3272 2950 2256 114 0 0 chr1 40304827 40305135 -202359218 + AluSg SINE Alu 1 308 -2 559 362 81 20 chr1 40305135 40305292 -202359061 - L2 LINE L2 -322 2950 2804 257 365 0 9 chr1 40305373 40305488 -202358865 + L3 LINE CR1 608 721 -856 553 340 12 12 chr1 40305710 40305954 -202358399 + L3 LINE CR1 797 1040 -537 612 293 153 13 chr1 40306121 40306226 -202358127 - MIR SINE MIR 0 262 173 306 0 0 0 chr1 40306226 40306260 -202358093 + (TTA)n Simple_repeat Simple_repeat 2 35 0 612 293 153 13 chr1 40306260 40306283 -202358070 - MIR SINE MIR -89 173 155 1894 107 8 0 chr1 40306283 40306546 -202357807 + AluSg SINE Alu 39 303 -7 612 293 153 13 chr1 40306546 40306645 -202357708 - MIR SINE MIR -107 155 2 556 319 0 0 chr1 40306685 40306829 -202357524 - MIR SINE MIR -75 187 44 352 305 69 56 chr1 40306876 40307058 -202357295 + L3 LINE CR1 1339 1526 -51 959 243 5 0 chr1 40307058 40307243 -202357110 + MER5A DNA MER1_type 1 186 -3 352 305 69 56 chr1 40307243 40307293 -202357060 + L3 LINE CR1 1526 1574 -3 315 294 0 0 chr1 40308309 40308394 -202355959 - MIR SINE MIR -26 236 152 374 206 27 0 chr1 40308455 40308528 -202355825 - MIR SINE MIR -57 151 77 442 232 43 14 chr1 40308578 40308716 -202355637 - MER104 DNA Tc2 -35 145 4 377 222 135 32 chr1 40309221 40309347 -202355006 + MER96 DNA MER1_type? 37 175 0 257 226 0 0 chr1 40309444 40309497 -202354856 - MIR SINE MIR -111 151 99 202 231 0 31 chr1 40309851 40309916 -202354437 + GA-rich Low_complexity Low_complexity 2 64 0 244 346 68 31 chr1 40309968 40310130 -202354223 + L3 LINE CR1 393 560 -1017 422 293 50 14 chr1 40310479 40310619 -202353734 + MIR SINE MIR 6 150 -112 200 323 0 0 chr1 40310702 40310764 -202353589 + MIR SINE MIR 188 249 -13 211 542 12 0 chr1 40312335 40312418 -202351935 + G-rich Low_complexity Low_complexity 2 85 0 38 22 0 0 chr1 40312418 40312463 -202351890 + GC_rich Low_complexity Low_complexity 1 45 0 461 76 15 0 chr1 40312565 40312631 -202351722 + L1PB2 LINE L1 6082 6148 -3 1992 136 3 10 chr1 40312797 40313098 -202351255 - AluSq SINE Alu -14 299 1 322 273 29 65 chr1 40314412 40314551 -202349802 - MIR3 SINE MIR -45 163 30 24 0 0 0 chr1 40317816 40317840 -202346513 + GC_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr1 40317850 40317881 -202346472 + GC_rich Low_complexity Low_complexity 1 31 0 227 113 0 65 chr1 40317917 40317979 -202346374 + (CTCGG)n Simple_repeat Simple_repeat 3 60 0 221 202 36 36 chr1 40318122 40318206 -202346147 + C-rich Low_complexity Low_complexity 6 89 0 449 295 20 55 chr1 40320694 40320894 -202343459 - MIR SINE MIR -1 261 69 637 131 8 16 chr1 40320904 40321026 -202343327 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 308 259 17 11 chr1 40322905 40323079 -202341274 + (TTCA)n Simple_repeat Simple_repeat 1 175 0 227 355 19 9 chr1 40323101 40323208 -202341145 + (CTCA)n Simple_repeat Simple_repeat 3 110 0 230 216 14 0 chr1 40323208 40323282 -202341071 + (TTCA)n Simple_repeat Simple_repeat 3 77 0 252 185 0 0 chr1 40323303 40323357 -202340996 + (CTCA)n Simple_repeat Simple_repeat 2 55 0 229 192 0 26 chr1 40323839 40323917 -202340436 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 201 186 157 88 chr1 40323919 40324021 -202340332 - MIR3 SINE MIR -97 111 3 231 36 0 0 chr1 40325210 40325238 -202339115 + (CA)n Simple_repeat Simple_repeat 1 28 0 1140 185 19 0 chr1 40325267 40325483 -202338870 + MIR SINE MIR 21 240 -22 222 37 0 0 chr1 40325598 40325625 -202338728 + (CA)n Simple_repeat Simple_repeat 1 27 0 619 209 7 7 chr1 40328149 40328288 -202336065 - L1MB7 LINE L1 0 6184 6046 1274 201 111 10 chr1 40328314 40328602 -202335751 + MSTD LTR MaLR 70 386 -10 187 103 0 0 chr1 40328667 40328696 -202335657 + L2 LINE L2 2726 2754 -560 650 267 115 9 chr1 40328829 40329046 -202335307 - MIR SINE MIR -19 243 4 2324 106 0 0 chr1 40329073 40329384 -202334969 - AluSx SINE Alu -1 311 1 305 302 78 84 chr1 40329384 40329824 -202334529 + L2 LINE L2 2815 3253 -19 279 309 21 10 chr1 40329979 40330076 -202334277 + L2 LINE L2 3172 3269 -3 207 302 48 0 chr1 40330882 40330945 -202333408 - MIR SINE MIR -37 225 160 218 260 20 0 chr1 40331849 40331899 -202332454 + L2 LINE L2 3262 3312 -1 2438 58 0 3 chr1 40331918 40332209 -202332144 + AluY SINE Alu 22 311 0 284 269 9 46 chr1 40333189 40333346 -202331007 + (CATATA)n Simple_repeat Simple_repeat 1 151 0 238 293 72 72 chr1 40334388 40334569 -202329784 - MIR SINE MIR -78 184 4 * 378 333 101 5 chr1 40334569 40334725 -202329628 + MIR SINE MIR 84 259 -3 196 250 0 0 chr1 40334726 40334774 -202329579 - MIR SINE MIR -142 66 19 414 337 35 63 chr1 40336281 40336566 -202327787 - L2 LINE L2 0 3272 2996 281 345 9 9 chr1 40336801 40336911 -202327442 - MIR3 SINE MIR -35 173 64 488 335 88 9 chr1 40337318 40337545 -202326808 - MIR SINE MIR -1 261 17 222 222 0 0 chr1 40338691 40338736 -202325617 + L2 LINE L2 3266 3310 -3 1741 173 21 10 chr1 40338861 40339150 -202325203 - AluJo SINE Alu -20 292 1 512 212 35 0 chr1 40339164 40339277 -202325076 - MIR SINE MIR -59 203 87 494 353 21 30 chr1 40339398 40339633 -202324720 - MIR SINE MIR -6 256 24 205 158 53 0 chr1 40339735 40339773 -202324580 - MIR SINE MIR -109 153 114 2113 89 30 0 chr1 40340603 40340874 -202323479 - AluSx SINE Alu 0 312 34 863 187 7 0 chr1 40340963 40341113 -202323240 - MER5A DNA MER1_type -5 184 34 444 279 35 6 chr1 40341137 40341309 -202323044 + L1ME4a LINE L1 5797 5973 -148 353 273 47 8 chr1 40341442 40341570 -202322783 - L2 LINE L2 -352 2961 2829 406 268 24 0 chr1 40341583 40341706 -202322647 + MIR SINE MIR 110 235 -27 686 320 102 24 chr1 40342097 40342509 -202321844 + L2 LINE L2 2869 3312 -1 1562 70 48 4 chr1 40343291 40343520 -202320833 - L1PA8 LINE L1 -6 6166 5928 885 222 19 45 chr1 40343728 40343994 -202320359 - MER33 DNA MER1_type -22 302 44 1041 294 162 30 chr1 40344088 40345145 -202319208 + L2 LINE L2 2051 3299 -14 240 35 0 0 chr1 40345146 40345175 -202319178 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 478 235 9 9 chr1 40345175 40345284 -202319069 + MIR SINE MIR 49 157 -105 451 322 40 64 chr1 40345308 40345637 -202318716 - MLT1I LTR MaLR -26 383 63 354 229 326 0 chr1 40345686 40345830 -202318523 - MIR SINE MIR -2 260 70 558 251 58 7 chr1 40346387 40346563 -202317790 - MIR SINE MIR -62 146 17 317 309 9 0 chr1 40346720 40346830 -202317523 + (TTCA)n Simple_repeat Simple_repeat 2 112 0 579 129 0 0 chr1 40347309 40347394 -202316959 - AluSc SINE Alu -8 301 217 201 238 12 50 chr1 40348037 40348117 -202316236 + GA-rich Low_complexity Low_complexity 1 77 0 196 243 155 22 chr1 40348293 40348434 -202315919 - MIR SINE MIR -54 208 48 180 152 0 0 chr1 40349059 40349092 -202315261 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1209 267 147 29 chr1 40349215 40350166 -202314187 + L2 LINE L2 2233 3313 0 288 231 0 0 chr1 40350396 40350474 -202313879 + CT-rich Low_complexity Low_complexity 4 81 0 1018 303 23 30 chr1 40350521 40351049 -202313304 - L1ME3A LINE L1 -219 5951 5428 214 209 47 0 chr1 40352223 40352266 -202312087 + L2 LINE L2 3228 3272 0 329 333 33 73 chr1 40353026 40353452 -202310901 - L2 LINE L2 -60 3212 2804 261 288 12 12 chr1 40353498 40353578 -202310775 - MIR SINE MIR -108 154 75 192 77 0 0 chr1 40354313 40354339 -202310014 + (TG)n Simple_repeat Simple_repeat 2 27 0 264 288 177 59 chr1 40354585 40354974 -202309379 + L2 LINE L2 2867 3301 -12 233 308 0 13 chr1 40355068 40355146 -202309207 + (TG)n Simple_repeat Simple_repeat 2 78 0 188 267 70 23 chr1 40355496 40355582 -202308771 - L2 LINE L2 -3 3269 3180 350 282 19 19 chr1 40355650 40355753 -202308600 + L2 LINE L2 3138 3240 -32 192 77 0 0 chr1 40355761 40355787 -202308566 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 654 227 141 23 chr1 40356479 40356699 -202307654 - MIR SINE MIR -13 249 4 225 222 0 0 chr1 40356957 40357002 -202307351 + MIR3 SINE MIR 158 202 -6 776 207 56 0 chr1 40358169 40358348 -202306005 - MER5A DNA MER1_type 0 189 1 992 251 31 9 chr1 40358397 40358624 -202305729 + MIR SINE MIR 30 261 -1 260 220 483 0 chr1 40359521 40359639 -202304714 - MER5A DNA MER1_type -6 183 9 272 366 24 38 chr1 40360811 40361024 -202303329 - L2 LINE L2 -119 3153 2944 258 350 24 32 chr1 40361081 40361204 -202303149 - L2 LINE L2 -1 3271 3150 342 0 0 0 chr1 40362019 40362057 -202302296 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 129 0 0 chr1 40362059 40362090 -202302263 + (GA)n Simple_repeat Simple_repeat 2 32 0 763 175 6 60 chr1 40362537 40362703 -202301650 - MER20 DNA MER1_type -62 157 1 250 204 19 0 chr1 40362944 40362998 -202301355 + MIR SINE MIR 42 96 -166 1005 185 9 44 chr1 40362998 40363225 -202301128 + MER20 DNA MER1_type 1 219 0 256 218 0 0 chr1 40363249 40363304 -202301049 + AluJ/monomer SINE Alu 242 296 -5 6107 76 18 71 chr1 40363307 40364648 -202299705 + SVA Other Other 1 868 -520 7025 63 6 62 chr1 40364702 40365713 -202298640 + SVA Other Other 433 1386 0 664 237 13 19 chr1 40365917 40366073 -202298280 + MIR SINE MIR 97 251 -11 1432 240 41 43 chr1 40366566 40367029 -202297324 + MLT1C LTR MaLR 6 467 0 490 309 70 0 chr1 40368342 40368543 -202295810 - MIR SINE MIR -35 227 13 204 314 114 29 chr1 40368549 40368689 -202295664 + L3 LINE CR1 960 1111 -466 261 83 0 0 chr1 40368972 40369008 -202295345 + (T)n Simple_repeat Simple_repeat 1 36 0 2456 192 15 15 chr1 40369306 40369843 -202294510 - L1MB7 LINE L1 -10 6174 5638 336 252 27 18 chr1 40369996 40370107 -202294246 + MIR SINE MIR 98 209 -53 848 208 153 9 chr1 40370107 40370362 -202293991 + MLT1E LTR MaLR 10 396 -258 1183 229 33 78 chr1 40370407 40370739 -202293614 + MLT1E LTR MaLR 277 593 0 203 343 88 5 chr1 40370892 40371096 -202293257 + L2 LINE L2 1751 1971 -1343 213 39 0 0 chr1 40371208 40371234 -202293119 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 966 313 32 27 chr1 40371241 40371927 -202292426 - L2 LINE L2 -46 3267 2578 1053 286 3 55 chr1 40371931 40372312 -202292041 - LTR16A LTR ERVL -6 444 84 435 356 70 15 chr1 40372334 40372665 -202291688 - L2 LINE L2 -733 2581 2233 604 287 242 18 chr1 40372687 40373314 -202291039 - L2 LINE L2 -1212 2102 1335 200 337 111 21 chr1 40373893 40374181 -202290172 + L2 LINE L2 2009 2322 -992 3010 153 35 9 chr1 40374277 40374852 -202289501 - L1MC1 LINE L1 -1 6332 5743 310 243 0 0 chr1 40374898 40374968 -202289385 + L2 LINE L2 3244 3313 0 330 360 68 34 chr1 40375122 40375416 -202288937 + L2 LINE L2 2436 2739 -575 239 261 43 0 chr1 40375498 40375567 -202288786 + MIR SINE MIR 189 260 -2 448 374 14 5 chr1 40375580 40375794 -202288559 + L3 LINE CR1 1204 1419 -158 483 311 50 6 chr1 40376313 40376474 -202287879 + MIR SINE MIR 25 192 -70 197 246 16 49 chr1 40376829 40376890 -202287463 + L2 LINE L2 3170 3228 -85 207 146 0 0 chr1 40377658 40377699 -202286654 + (CA)n Simple_repeat Simple_repeat 1 41 0 325 310 78 52 chr1 40378288 40378556 -202285797 - L3 LINE CR1 -125 1452 1178 590 277 33 5 chr1 40378673 40378857 -202285496 - MIR SINE MIR -5 257 69 263 279 13 25 chr1 40379116 40379195 -202285158 + MIR SINE MIR 22 99 -163 416 256 27 131 chr1 40380154 40380490 -202283863 + MLT1H LTR MaLR 64 364 -185 181 259 56 28 chr1 40380668 40380776 -202283577 - L2 LINE L2 -1208 2106 1996 492 306 55 16 chr1 40381418 40381728 -202282625 + L1ME4a LINE L1 5788 6109 -12 651 241 54 6 chr1 40382232 40382398 -202281955 + MER58C DNA MER1_type 1 174 -41 438 299 83 0 chr1 40382780 40382924 -202281429 - MIR SINE MIR -90 172 17 334 303 88 23 chr1 40383172 40383358 -202280995 - MIR SINE MIR -62 146 3 637 215 103 60 chr1 40383996 40384220 -202280133 + MLT1H LTR MaLR 30 305 -244 186 103 0 0 chr1 40384232 40384261 -202280092 + (CAGCC)n Simple_repeat Simple_repeat 2 30 0 515 223 149 5 chr1 40384368 40384634 -202279719 + MER2 DNA MER2_type 7 345 0 207 343 0 0 chr1 40384655 40384728 -202279625 + (CA)n Simple_repeat Simple_repeat 1 73 0 544 279 159 10 chr1 40385378 40385586 -202278767 + MIR SINE MIR 24 262 0 231 250 133 58 chr1 40385585 40385705 -202278648 + L2 LINE L2 3184 3312 -1 * 201 341 110 0 chr1 40386010 40386101 -202278252 - MIR3 SINE MIR -21 187 87 1097 122 0 6 chr1 40386297 40386375 -202277978 + (GGA)n Simple_repeat Simple_repeat 1 256 0 1097 122 0 6 chr1 40386375 40386555 -202277798 + (GGA)n Simple_repeat Simple_repeat 2 180 0 386 314 57 21 chr1 40387016 40387156 -202277197 - L2 LINE L2 -3 3269 3125 2062 153 3 0 chr1 40387169 40387470 -202276883 + AluSq SINE Alu 1 302 -11 441 307 50 35 chr1 40387957 40388159 -202276194 - L2 LINE L2 -220 3052 2848 305 252 107 10 chr1 40388393 40388496 -202275857 - L2 LINE L2 -462 2852 2740 1857 274 136 17 chr1 40388516 40389280 -202275073 - L2 LINE L2 -1117 2197 1343 553 252 65 46 chr1 40389925 40390144 -202274209 - MIR SINE MIR -35 227 8 495 313 14 7 chr1 40390327 40390471 -202273882 + MIR SINE MIR 36 180 -82 380 287 193 11 chr1 40390502 40390683 -202273670 - L3 LINE CR1 -471 1106 893 196 288 68 0 chr1 40391174 40391247 -202273106 - MIR SINE MIR -67 195 118 183 188 0 0 chr1 40391298 40391330 -202273023 - L3 LINE CR1 -114 1463 1432 255 150 0 0 chr1 40391907 40391947 -202272406 - MER117 DNA MER1_type -48 149 110 830 86 0 0 chr1 40394710 40394815 -202269538 + AluY SINE Alu 199 303 -8 2279 117 10 0 chr1 40394828 40395136 -202269217 + AluSx SINE Alu 1 311 -1 278 247 39 0 chr1 40395549 40395626 -202268727 + LTR67 LTR ERVL 448 527 -30 546 253 150 30 chr1 40395685 40395918 -202268435 + MIR SINE MIR 2 262 0 644 328 61 33 chr1 40396018 40396411 -202267942 + L3 LINE CR1 759 1162 -415 312 336 8 23 chr1 40396561 40396689 -202267664 - MER117 DNA MER1_type 0 197 72 1134 238 92 47 chr1 40396939 40397342 -202267011 + MLT1J2 LTR MaLR 1 421 -29 502 269 50 28 chr1 40397395 40397577 -202266776 + MER5A DNA MER1_type 3 188 -1 507 290 95 18 chr1 40398191 40398360 -202265993 + MIR SINE MIR 22 203 -59 340 224 93 9 chr1 40398511 40398618 -202265735 + MIR SINE MIR 81 196 -66 180 152 0 0 chr1 40398636 40398669 -202265684 + (TG)n Simple_repeat Simple_repeat 2 34 0 531 216 108 22 chr1 40398711 40398850 -202265503 - MIR SINE MIR -1 261 111 300 322 25 0 chr1 40399241 40399362 -202264991 + L1ME LINE L1 5610 5733 -437 1891 137 163 39 chr1 40399641 40399864 -202264489 - MSTA LTR MaLR 0 428 234 2292 138 0 0 chr1 40399864 40400175 -202264178 - AluSx SINE Alu -1 311 1 1891 137 163 39 chr1 40400175 40400332 -202264021 - MSTA LTR MaLR -194 234 1 26 30 0 0 chr1 40400375 40400408 -202263945 + AT_rich Low_complexity Low_complexity 1 33 0 2076 140 3 0 chr1 40400453 40400761 -202263592 - AluSx SINE Alu -3 309 1 667 266 108 9 chr1 40400857 40401079 -202263274 - MIR SINE MIR -3 259 16 247 203 81 54 chr1 40401129 40401203 -202263150 - MIR SINE MIR -74 188 113 193 347 53 0 chr1 40401578 40401653 -202262700 + MIR3 SINE MIR 87 165 -43 545 306 41 0 chr1 40402258 40402428 -202261925 + MLT1H1 LTR MaLR 3 179 -376 276 284 0 17 chr1 40402477 40402593 -202261760 + GA-rich Low_complexity Low_complexity 1 114 0 809 206 0 13 chr1 40404300 40404455 -202259898 - MER45A DNA AcHobo -24 154 2 393 194 252 58 chr1 40404581 40404682 -202259671 + MIR SINE MIR 77 157 -105 986 171 12 0 chr1 40404682 40404846 -202259507 + FRAM SINE Alu 1 166 0 393 194 252 58 chr1 40404846 40404899 -202259454 + MIR SINE MIR 157 261 -1 292 291 127 9 chr1 40405159 40405269 -202259084 - L2 LINE L2 0 3313 3191 606 240 70 12 chr1 40405342 40405513 -202258840 - MIR SINE MIR -14 248 68 224 351 199 0 chr1 40405512 40405643 -202258710 - L2 LINE L2 0 3272 3116 * 267 220 0 0 chr1 40405740 40405790 -202258563 + L2 LINE L2 3223 3272 0 679 282 58 16 chr1 40405807 40406134 -202258219 - L2 LINE L2 -241 3031 2687 587 276 89 68 chr1 40406153 40406637 -202257716 + MLT1H LTR MaLR 7 542 -7 189 261 0 22 chr1 40407546 40407592 -202256761 + MIR SINE MIR 78 122 -86 727 230 89 11 chr1 40407635 40407826 -202256527 - MIR SINE MIR -3 259 54 254 211 18 0 chr1 40407827 40407884 -202256469 - LTR67 LTR ERVL -10 547 490 247 337 24 18 chr1 40408181 40408350 -202256003 - LTR67 LTR ERVL -386 171 2 306 227 57 34 chr1 40408814 40408902 -202255451 + L1MCa LINE L1 1975 2064 -4362 759 277 99 5 chr1 40408915 40409128 -202255225 - MIR SINE MIR -26 236 4 452 232 54 120 chr1 40409129 40409405 -202254948 + L2 LINE L2 3015 3272 0 2258 129 0 3 chr1 40409783 40410094 -202254259 - AluJb SINE Alu 0 312 3 207 293 24 49 chr1 40410094 40410176 -202254177 + MER5A DNA MER1_type 4 83 -106 271 247 26 13 chr1 40410344 40410421 -202253932 - MIR SINE MIR -91 117 40 960 247 17 17 chr1 40411172 40411411 -202252942 - MIR SINE MIR -21 241 3 221 292 135 45 chr1 40411912 40412001 -202252352 + MIR3 SINE MIR 66 162 -46 288 342 17 8 chr1 40412626 40412743 -202251610 - L2 LINE L2 -993 2321 2204 931 302 35 62 chr1 40412851 40413504 -202250849 - L2 LINE L2 0 3272 2632 327 172 0 108 chr1 40413686 40413779 -202250574 - L1MC4a LINE L1 -1716 6092 6010 270 294 53 83 chr1 40413946 40414174 -202250179 + L2 LINE L2 2818 3038 -234 466 259 43 17 chr1 40414178 40414294 -202250059 - L2 LINE L2 -1 3271 3153 187 278 324 9 chr1 40414363 40414471 -202249882 + L2 LINE L2 3108 3249 -23 1147 72 12 0 chr1 40415304 40415471 -202248882 + (TTCC)n Simple_repeat Simple_repeat 4 172 0 2094 146 0 0 chr1 40415494 40415795 -202248558 - AluSx SINE Alu -11 301 1 222 290 70 0 chr1 40415800 40415900 -202248453 + MIR SINE MIR 117 223 -39 326 306 286 0 chr1 40416423 40416570 -202247783 + MIR SINE MIR 47 235 -27 873 248 24 5 chr1 40416595 40416801 -202247552 - MIR SINE MIR -44 218 9 219 287 11 0 chr1 40417260 40417347 -202247006 + (TG)n Simple_repeat Simple_repeat 1 88 0 243 230 58 72 chr1 40418523 40418662 -202245691 - L2 LINE L2 -211 3061 2925 462 271 90 6 chr1 40418681 40418847 -202245506 - MIR SINE MIR -2 260 81 4231 117 17 2 chr1 40419108 40419743 -202244610 - L1MA5A LINE L1 0 6297 5653 276 298 96 0 chr1 40419849 40419953 -202244400 - MIR SINE MIR -63 145 32 196 244 0 0 chr1 40420024 40420069 -202244284 + L2 LINE L2 3267 3311 -2 285 378 56 17 chr1 40421287 40421520 -202242833 + L3b LINE CR1 1342 1583 0 485 283 80 0 chr1 40421622 40421760 -202242593 - MIR SINE MIR -3 259 111 208 248 30 30 chr1 40422347 40422448 -202241905 + (CAGAGA)n Simple_repeat Simple_repeat 3 103 0 460 206 59 0 chr1 40422530 40422632 -202241721 - L2 LINE L2 -20 3293 3186 248 0 31 0 chr1 40422778 40422810 -202241543 + (GA)n Simple_repeat Simple_repeat 2 34 0 304 289 0 0 chr1 40423004 40423108 -202241245 + (CAGA)n Simple_repeat Simple_repeat 2 105 0 514 264 47 0 chr1 40425186 40425315 -202239038 - L2 LINE L2 0 3272 3138 2423 67 3 10 chr1 40425401 40425699 -202238654 + AluY SINE Alu 1 296 -15 216 270 18 27 chr1 40426960 40427071 -202237282 + GA-rich Low_complexity Low_complexity 2 111 0 267 302 12 12 chr1 40427832 40427918 -202236435 - MIR SINE MIR -166 96 11 491 324 10 15 chr1 40428240 40428444 -202235909 - L1ME4a LINE L1 -239 5882 5680 190 361 14 14 chr1 40429284 40429356 -202234997 - MIR SINE MIR -166 96 25 214 300 217 28 chr1 40430669 40430849 -202233504 - L2 LINE L2 -1 3312 3099 323 317 99 7 chr1 40431770 40431912 -202232441 + MIR3 SINE MIR 5 159 -49 276 151 38 0 chr1 40432020 40432073 -202232280 + MIR3 SINE MIR 151 205 -3 210 324 44 0 chr1 40432160 40432228 -202232125 - L3 LINE CR1 -1106 471 401 1348 106 0 0 chr1 40432500 40432680 -202231673 - AluSc SINE Alu -10 299 120 363 113 0 0 chr1 40432680 40432733 -202231620 + AluSc SINE Alu 50 102 -197 684 243 24 18 chr1 40434394 40434563 -202229790 - MER5B DNA MER1_type -2 176 7 202 270 32 0 chr1 40435533 40435596 -202228757 + MER91B DNA MER1_type 2 66 -124 539 281 38 115 chr1 40435698 40436168 -202228185 + L2 LINE L2 2838 3271 -1 665 256 37 21 chr1 40436540 40436731 -202227622 - MIR SINE MIR -48 214 21 256 256 102 44 chr1 40437275 40437412 -202226941 + MIR3 SINE MIR 3 147 -61 * 638 308 51 62 chr1 40437337 40437896 -202226457 + L2 LINE L2 2720 3272 0 529 295 45 22 chr1 40437906 40438130 -202226223 - LTR67 LTR ERVL -3 554 326 261 200 0 0 chr1 40438238 40438283 -202226070 - LTR67 LTR ERVL -405 152 108 3427 75 26 7 chr1 40438296 40438752 -202225601 - L1PA10 LINE L1 -2 6166 5702 290 284 69 0 chr1 40438914 40439016 -202225337 + MIR3 SINE MIR 88 196 -12 282 254 0 0 chr1 40439096 40439159 -202225194 - MLT1I LTR MaLR -2 407 345 754 243 175 69 chr1 40439416 40440026 -202224327 - L2 LINE L2 0 3313 2639 743 271 66 17 chr1 40440189 40440549 -202223804 - MLT1I LTR MaLR 0 409 32 494 248 44 0 chr1 40440987 40441124 -202223229 - MIR SINE MIR -38 224 82 382 255 46 0 chr1 40441141 40441256 -202223097 - MLT1J2 LTR MaLR -265 146 27 297 243 14 0 chr1 40441268 40441338 -202223015 - MIR SINE MIR -187 75 5 390 42 0 0 chr1 40442421 40442469 -202221884 + (CA)n Simple_repeat Simple_repeat 1 48 0 1043 281 64 46 chr1 40442528 40442984 -202221369 - LTR67 LTR ERVL -35 522 59 2346 103 24 34 chr1 40443413 40443792 -202220561 + THE1C LTR MaLR 1 375 0 191 241 54 98 chr1 40443808 40443920 -202220433 - L2 LINE L2 -493 2821 2715 362 286 108 61 chr1 40443945 40444158 -202220195 + MIR SINE MIR 36 258 -4 12691 203 37 24 chr1 40445457 40447374 -202216979 - L1MB7 LINE L1 -1 6681 4789 207 0 0 0 chr1 40447374 40447397 -202216956 + (TG)n Simple_repeat Simple_repeat 2 24 0 12691 203 37 24 chr1 40447397 40448441 -202215912 - L1MB7 LINE L1 -1893 4789 3760 2312 89 0 0 chr1 40448441 40448751 -202215602 + AluY SINE Alu 1 310 0 12691 203 37 24 chr1 40448751 40449840 -202214513 - L1MB7 LINE L1 -2922 3760 2601 216 67 0 0 chr1 40449840 40449870 -202214483 + (TTG)n Simple_repeat Simple_repeat 2 31 0 12691 203 37 24 chr1 40449870 40450425 -202213928 - L1MB7 LINE L1 -4081 2601 2054 5953 70 14 3 chr1 40450433 40451204 -202213149 - L1PA8 LINE L1 -1 6171 5392 7290 207 46 27 chr1 40451210 40451776 -202212577 - L1MB7 LINE L1 -4769 1877 1323 457 63 13 13 chr1 40451776 40451855 -202212498 + (TA)n Simple_repeat Simple_repeat 1 79 0 7290 207 46 27 chr1 40451855 40453120 -202211233 - L1MB7 LINE L1 -5323 1323 14 361 321 29 0 chr1 40454935 40455072 -202209281 - MIR SINE MIR -75 187 47 521 305 30 0 chr1 40456005 40456172 -202208181 - MIR3 SINE MIR -21 187 16 317 353 7 40 chr1 40456594 40456744 -202207609 - L2 LINE L2 -180 3092 2948 562 258 20 25 chr1 40457022 40457220 -202207133 + MIR SINE MIR 63 259 -3 677 283 172 15 chr1 40458714 40459057 -202205296 + LTR33 LTR ERVL 125 521 0 385 291 65 82 chr1 40459601 40459907 -202204446 - L2 LINE L2 0 3272 2972 206 304 114 27 chr1 40460467 40460651 -202203702 + MIR SINE MIR 58 257 -5 194 190 17 0 chr1 40460927 40460985 -202203368 - L2 LINE L2 -340 2974 2916 1111 213 32 0 chr1 40461920 40462136 -202202217 + MER58A DNA MER1_type 2 224 0 305 314 24 29 chr1 40462250 40462394 -202201959 - MIR SINE MIR -45 163 21 336 254 49 25 chr1 40462642 40462764 -202201589 - MIR SINE MIR -70 192 68 845 269 172 10 chr1 40463116 40463633 -202200720 + L2 LINE L2 2293 2893 -421 899 264 81 12 chr1 40463725 40464069 -202200284 + L2 LINE L2 2910 3277 -36 1653 88 10 0 chr1 40464371 40464576 -202199777 - AluSg/x SINE Alu -19 293 87 468 303 51 10 chr1 40464675 40464870 -202199483 + MIR SINE MIR 56 258 -4 1099 268 112 51 chr1 40465698 40466457 -202197896 + L1MEc LINE L1 509 1211 -4994 * 5515 166 32 49 chr1 40466451 40467633 -202196720 + L1MC2 LINE L1 5186 6343 -1 2457 215 122 23 chr1 40467638 40467708 -202196645 + L1MEc LINE L1 1311 1373 -4842 324 0 0 0 chr1 40467708 40467744 -202196609 + (CA)n Simple_repeat Simple_repeat 2 37 0 2457 215 122 23 chr1 40467744 40468736 -202195617 + L1MEc LINE L1 1373 2474 -3741 7614 28 10 0 chr1 40468736 40469670 -202194683 + L1PA4 LINE L1 5209 6151 -4 2457 215 122 23 chr1 40469670 40469780 -202194573 + L1MEc LINE L1 2474 2572 -3643 233 174 65 0 chr1 40469780 40469826 -202194527 + L1ME2 LINE L1 6116 6164 0 344 336 15 15 chr1 40470206 40470343 -202194010 + L2 LINE L2 3136 3272 0 206 176 0 39 chr1 40470348 40470399 -202193954 + GA-rich Low_complexity Low_complexity 3 51 0 345 281 47 27 chr1 40471483 40471686 -202192667 + L1MC5 LINE L1 7609 7902 -140 2094 123 3 7 chr1 40472064 40472364 -202191989 + AluSx SINE Alu 1 299 -13 533 299 100 4 chr1 40472434 40472665 -202191688 - MIR SINE MIR -2 260 8 213 156 0 22 chr1 40473371 40473416 -202190937 + T-rich Low_complexity Low_complexity 5 48 0 423 0 0 0 chr1 40474289 40474336 -202190017 + (TC)n Simple_repeat Simple_repeat 1 47 0 505 286 51 29 chr1 40475541 40475817 -202188536 - HAL1 LINE L1 -5 2502 2221 480 288 121 88 chr1 40475893 40476438 -202187915 + MLT1K LTR MaLR 26 588 0 230 305 64 21 chr1 40476479 40476620 -202187733 - HAL1 LINE L1 -388 2119 1973 1414 262 106 62 chr1 40476657 40477604 -202186749 - HAL1 LINE L1 -698 1809 822 5800 141 32 34 chr1 40477718 40477851 -202186502 + L1MA7 LINE L1 4722 4854 -1437 901 128 0 23 chr1 40477851 40477984 -202186369 - FLAM_C SINE Alu -3 130 1 5800 141 32 34 chr1 40477984 40478741 -202185612 + L1MA7 LINE L1 4854 5617 -674 2296 145 29 67 chr1 40478741 40478935 -202185418 + MSTB1 LTR MaLR 1 201 -231 1513 167 74 4 chr1 40478935 40479192 -202185161 - AluJb SINE Alu -37 275 1 2296 145 29 67 chr1 40479192 40479444 -202184909 + MSTB1 LTR MaLR 201 430 -2 5800 141 32 34 chr1 40479444 40480118 -202184235 + L1MA7 LINE L1 5617 6291 0 1421 92 36 119 chr1 40480243 40480494 -202183859 - MER30 DNA MER1_type 0 230 1 281 270 58 58 chr1 40480940 40481077 -202183276 - HAL1 LINE L1 -2366 141 5 3150 196 46 18 chr1 40481911 40482626 -202181727 + L1MD2 LINE L1 5408 6142 -217 10696 159 56 21 chr1 40482637 40483589 -202180764 + L1MA9 LINE L1 3006 3923 -2389 1719 195 3 13 chr1 40483589 40483887 -202180466 + AluJo SINE Alu 4 298 -14 10696 159 56 21 chr1 40483887 40484340 -202180013 + L1MA9 LINE L1 3923 4359 -1953 2990 112 4 86 chr1 40484340 40484868 -202179485 + L1PB1 LINE L1 5659 6148 -3 10696 159 56 21 chr1 40484868 40486453 -202177900 + L1MA9 LINE L1 4359 6104 -208 533 186 0 21 chr1 40486454 40486551 -202177802 - Tigger5 DNA MER2_type -1 2322 2228 * 1433 242 34 3 chr1 40486522 40486819 -202177534 - Tigger5 DNA MER2_type -2016 307 2 329 161 0 0 chr1 40486821 40486883 -202177470 + L1MA9 LINE L1 6104 6165 -147 361 124 19 57 chr1 40486887 40486992 -202177361 + GA-rich Low_complexity Low_complexity 4 104 0 820 121 64 0 chr1 40486994 40487134 -202177219 + L1MA9 LINE L1 6162 6310 -2 690 162 0 0 chr1 40487179 40487284 -202177069 + U6 snRNA snRNA 1 105 -2 855 147 0 14 chr1 40487285 40487428 -202176925 + L1MB3 LINE L1 5555 5695 -488 * 12914 203 29 38 chr1 40487413 40490684 -202173669 + L1MA7 LINE L1 2617 5862 -1703 1797 170 14 0 chr1 40490684 40490966 -202173387 + AluJo SINE Alu 3 288 -24 12914 203 29 38 chr1 40490966 40491513 -202172840 + L1MA7 LINE L1 5862 6413 -1152 769 34 0 0 chr1 40491511 40491599 -202172754 + L1PA3 LINE L1 5 92 -6054 * 40149 34 3 4 chr1 40491599 40496959 -202167394 + L1PA3 LINE L1 617 5978 -177 2829 82 70 21 chr1 40496959 40497386 -202166967 - LTR7 LTR ERV1 -2 448 1 40149 34 3 4 chr1 40497386 40497564 -202166789 + L1PA3 LINE L1 5978 6155 0 1756 97 85 6 chr1 40497939 40498265 -202166088 + LTR7 LTR ERV1 1 412 -38 1248 138 0 0 chr1 40498296 40498477 -202165876 + AluSg/x SINE Alu 125 305 -7 5860 147 9 22 chr1 40498477 40499738 -202164615 + L1MA7 LINE L1 6415 7659 -51 771 162 7 59 chr1 40499738 40499874 -202164479 + FLAM_A SINE Alu 1 129 -4 5860 147 9 22 chr1 40499874 40499924 -202164429 + L1MA7 LINE L1 7659 7708 -2 2400 132 11 13 chr1 40499961 40500333 -202164020 + L1MB3 LINE L1 5812 6182 -1 10938 196 48 57 chr1 40501358 40502271 -202162082 + L1MD2 LINE L1 18 938 -5602 2599 21 4 0 chr1 40502271 40502552 -202161801 - L1PA5 LINE L1 -9 6145 5864 10938 196 48 57 chr1 40502552 40502661 -202161692 + L1MD2 LINE L1 938 1047 -5493 2092 137 3 16 chr1 40502661 40502974 -202161379 + AluSx SINE Alu 1 309 -3 10938 196 48 57 chr1 40502974 40503846 -202160507 + L1MD2 LINE L1 1047 1926 -4614 1886 158 16 3 chr1 40503846 40504149 -202160204 + AluJb SINE Alu 1 307 -5 10938 196 48 57 chr1 40504149 40504666 -202159687 + L1MD2 LINE L1 1926 2446 -4094 2255 90 10 0 chr1 40504666 40504955 -202159398 + AluSc SINE Alu 1 292 -17 10938 196 48 57 chr1 40504955 40505568 -202158785 + L1MD2 LINE L1 2446 4304 -2236 3398 178 65 120 chr1 40505548 40505931 -202158422 + L1MD2 LINE L1 5288 5691 -945 * 4208 127 5 98 chr1 40505931 40506593 -202157760 + L1MB2 LINE L1 5426 5998 -173 2194 146 24 18 chr1 40506593 40506928 -202157425 - MER1B DNA MER1_type 0 337 1 4208 127 5 98 chr1 40506928 40507087 -202157266 + L1MB2 LINE L1 5998 6170 -1 3398 178 65 120 chr1 40507087 40508059 -202156294 + L1MD2 LINE L1 5691 6626 -10 756 232 50 0 chr1 40508382 40508563 -202155790 - Charlie4 DNA MER1_type -1766 195 6 633 134 0 17 chr1 40508570 40508689 -202155664 - L1M4 LINE L1 -3150 2996 2880 380 323 53 0 chr1 40509380 40509513 -202154840 + MIR3 SINE MIR 51 190 -18 225 65 0 0 chr1 40509770 40509801 -202154552 + (CA)n Simple_repeat Simple_repeat 1 31 0 199 274 96 14 chr1 40510082 40510155 -202154198 + L3 LINE CR1 813 891 -686 2021 101 0 0 chr1 40510522 40510779 -202153574 - AluSc SINE Alu -19 290 34 589 231 89 18 chr1 40511221 40511390 -202152963 + MLT1L LTR MaLR 142 322 -293 1142 180 49 88 chr1 40511516 40511822 -202152531 + MSTC LTR MaLR 135 428 0 846 306 108 15 chr1 40512166 40512509 -202151844 - L2 LINE L2 -19 3294 2920 304 241 23 23 chr1 40512523 40512610 -202151743 - MER112 DNA MER1_type -1 259 173 5793 139 28 23 chr1 40512638 40512830 -202151523 - L1MA8 LINE L1 -5 6286 6096 2567 93 14 17 chr1 40512830 40513186 -202151167 - THE1A LTR MaLR 0 355 1 5793 139 28 23 chr1 40513186 40514926 -202149427 - L1MA8 LINE L1 -195 6096 4349 2599 224 294 15 chr1 40514925 40516028 -202148325 - L1M3c LINE L1 -4850 2187 775 * 601 216 72 22 chr1 40516054 40516235 -202148118 - MER112 DNA MER1_type -70 190 1 412 267 145 35 chr1 40516326 40516644 -202147709 - L2 LINE L2 -1235 2079 1727 185 332 123 37 chr1 40516677 40516864 -202147489 + L3 LINE CR1 1034 1236 -341 379 252 74 37 chr1 40517425 40517560 -202146793 + MIR SINE MIR 110 249 -13 414 344 100 46 chr1 40517578 40517988 -202146365 + L2 LINE L2 2841 3272 0 220 265 0 20 chr1 40519103 40519152 -202145201 - MIR SINE MIR -195 67 20 768 186 77 58 chr1 40519769 40520074 -202144279 - MER31B LTR ERV1 -33 433 1 2709 135 67 0 chr1 40520305 40520706 -202143647 - MSTC LTR MaLR 0 428 1 345 286 57 14 chr1 40520848 40520988 -202143365 - MIR SINE MIR -66 196 51 316 324 48 0 chr1 40521024 40521129 -202143224 + L2 LINE L2 3140 3249 -23 504 300 45 23 chr1 40521143 40521392 -202142961 - MIR SINE MIR -3 259 5 461 266 38 25 chr1 40522260 40522418 -202141935 + MIR SINE MIR 25 184 -78 680 255 106 55 chr1 40522557 40523031 -202141322 + LTR33 LTR ERVL 16 513 -8 218 179 0 0 chr1 40523104 40523143 -202141210 + L2 LINE L2 3017 3055 -217 271 293 35 17 chr1 40523868 40523984 -202140369 + MIR3 SINE MIR 81 198 -10 199 235 59 0 chr1 40524168 40524219 -202140134 - MIR SINE MIR -14 248 195 296 48 24 0 chr1 40524809 40524851 -202139502 + (TG)n Simple_repeat Simple_repeat 1 43 0 344 271 93 0 chr1 40525269 40525376 -202138977 + MIR SINE MIR 55 171 -91 353 366 71 18 chr1 40525610 40525891 -202138462 + L3 LINE CR1 607 902 -675 342 309 141 44 chr1 40525893 40526142 -202138211 + L2 LINE L2 2982 3254 -18 467 273 21 21 chr1 40526170 40526313 -202138040 + L3 LINE CR1 916 1058 -519 514 298 30 6 chr1 40527518 40527686 -202136667 + MIR SINE MIR 38 209 -53 410 286 101 2 chr1 40528015 40528218 -202136135 + MIR SINE MIR 2 261 -1 321 321 38 30 chr1 40528604 40528739 -202135614 + MIR SINE MIR 14 150 -58 2191 178 99 15 chr1 40529031 40529497 -202134856 + MLT1D LTR MaLR 1 505 0 1916 124 23 23 chr1 40529507 40529813 -202134540 - AluJb SINE Alu -6 306 1 453 254 16 9 chr1 40529813 40529939 -202134414 - MIR SINE MIR -52 156 28 410 263 11 0 chr1 40529987 40530082 -202134271 + L3 LINE CR1 1430 1525 -52 391 271 57 14 chr1 40530942 40531082 -202133271 - L2 LINE L2 -4 3309 3164 195 240 185 20 chr1 40531639 40531785 -202132568 - L2 LINE L2 -893 2421 2252 189 0 0 0 chr1 40531818 40531839 -202132514 + (GGCTG)n Simple_repeat Simple_repeat 4 24 0 886 201 11 123 chr1 40532559 40532827 -202131526 + MIR SINE MIR 25 262 0 333 284 101 35 chr1 40534008 40534177 -202130176 + MLT1H LTR MaLR 119 298 -251 1898 182 11 3 chr1 40534375 40534737 -202129616 + MLT1A1 LTR MaLR 1 365 0 720 234 33 5 chr1 40535255 40535439 -202128914 + MIR SINE MIR 61 249 -13 563 278 37 12 chr1 40535840 40536002 -202128351 + MIR SINE MIR 33 198 -64 580 298 83 9 chr1 40536006 40536224 -202128129 - MLT1J2 LTR MaLR 0 450 217 231 250 19 0 chr1 40536570 40536622 -202127731 + (CTA)n Simple_repeat Simple_repeat 2 54 0 211 218 55 0 chr1 40536638 40536693 -202127660 + MIR SINE MIR 134 191 -71 2380 80 7 3 chr1 40536802 40537102 -202127251 - AluY SINE Alu -3 308 8 610 308 47 9 chr1 40537758 40537969 -202126384 + MIR SINE MIR 31 249 -13 929 270 46 4 chr1 40538269 40538510 -202125843 - MIR SINE MIR -10 252 2 351 65 0 0 chr1 40539543 40539589 -202124764 + (TTG)n Simple_repeat Simple_repeat 2 47 0 423 296 24 24 chr1 40539740 40539909 -202124444 + CT-rich Low_complexity Low_complexity 2 170 0 210 361 12 0 chr1 40539931 40540014 -202124339 + CT-rich Low_complexity Low_complexity 1 84 0 558 259 3 16 chr1 40540058 40540440 -202123913 + CT-rich Low_complexity Low_complexity 1 376 0 393 312 0 0 chr1 40540772 40540881 -202123472 - MIR3 SINE MIR -18 190 82 464 354 101 28 chr1 40542794 40543103 -202121250 + L3 LINE CR1 919 1265 -312 813 243 6 6 chr1 40543103 40543280 -202121073 - MER5B DNA MER1_type -1 177 1 464 354 101 28 chr1 40543280 40543365 -202120988 + L3 LINE CR1 1265 1342 -235 184 348 51 17 chr1 40543981 40544099 -202120254 - MIR SINE MIR -54 208 87 237 277 0 0 chr1 40544541 40544606 -202119747 + (CA)n Simple_repeat Simple_repeat 2 66 0 479 181 69 9 chr1 40544909 40545025 -202119328 - MIR SINE MIR -66 196 74 524 270 124 17 chr1 40545127 40545305 -202119048 + L2 LINE L2 3081 3277 -36 272 269 37 37 chr1 40546027 40546135 -202118218 + L2 LINE L2 3152 3259 -13 225 0 0 0 chr1 40546135 40546160 -202118193 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 320 314 17 8 chr1 40546166 40546284 -202118069 + MIR SINE MIR 27 145 -63 198 333 26 44 chr1 40546886 40547000 -202117353 - MIR SINE MIR 0 262 151 1555 176 62 79 chr1 40547026 40547572 -202116781 + MLT1E LTR MaLR 88 593 0 466 317 7 7 chr1 40547572 40547717 -202116636 - MIR SINE MIR -109 153 9 284 263 26 0 chr1 40548283 40548359 -202115994 + MIR SINE MIR 33 110 -152 514 184 0 51 chr1 40548359 40548457 -202115896 - 5S rRNA rRNA -28 93 1 202 167 28 0 chr1 40548459 40548495 -202115858 + MIR SINE MIR 117 153 -109 229 192 279 0 chr1 40548653 40548757 -202115596 - MER104 DNA Tc2 -47 133 1 207 121 0 0 chr1 40548811 40548844 -202115509 + L2 LINE L2 3239 3271 -1 330 300 30 0 chr1 40549229 40549329 -202115024 + MIR SINE MIR 110 212 -50 445 90 0 26 chr1 40550215 40550293 -202114060 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 1085 251 143 16 chr1 40550293 40550890 -202113463 - L2 LINE L2 -16 3297 2636 625 283 12 0 chr1 40551414 40551587 -202112766 + MIR SINE MIR 32 206 -56 1061 247 132 37 chr1 40551610 40552043 -202112310 - MLT1J LTR MaLR 0 511 38 1042 287 70 54 chr1 40552688 40553203 -202111150 + LTR33A LTR ERVL 1 523 0 248 216 0 0 chr1 40553225 40553276 -202111077 + L2 LINE L2 3263 3313 0 241 273 26 13 chr1 40553838 40553915 -202110438 + L3b LINE CR1 1303 1380 -203 1010 270 112 28 chr1 40553970 40554407 -202109946 + L2 LINE L2 2833 3306 -7 1506 164 120 18 chr1 40554454 40554729 -202109624 + AluJo SINE Alu 2 304 -8 296 306 72 9 chr1 40554808 40554919 -202109434 + MIR SINE MIR 137 254 -8 616 293 65 32 chr1 40555163 40555409 -202108944 + MIR SINE MIR 5 258 -4 1347 178 54 94 chr1 40555448 40555853 -202108500 + MLT1B LTR MaLR 2 390 0 206 178 0 44 chr1 40557306 40557351 -202107002 + C-rich Low_complexity Low_complexity 5 47 0 317 256 0 24 chr1 40558147 40558229 -202106124 - MIR SINE MIR -148 114 35 353 286 38 0 chr1 40558403 40558508 -202105845 - MIR SINE MIR -64 144 36 672 214 148 0 chr1 40559196 40559378 -202104975 - MIR SINE MIR -14 248 40 214 308 42 56 chr1 40559434 40559577 -202104776 - MIR SINE MIR -26 236 96 224 301 226 7 chr1 40560227 40560373 -202103980 - MIR SINE MIR -64 198 21 180 0 0 0 chr1 40561193 40561213 -202103140 + (CA)n Simple_repeat Simple_repeat 1 20 0 2306 101 0 3 chr1 40561305 40561602 -202102751 - AluSq SINE Alu -17 296 1 297 212 106 12 chr1 40561917 40562002 -202102351 - MER5A DNA MER1_type -83 106 14 2324 113 0 0 chr1 40562320 40562612 -202101741 + AluSx SINE Alu 1 292 -20 599 299 27 5 chr1 40562624 40562808 -202101545 - L3 LINE CR1 -472 1105 918 3250 77 6 54 chr1 40562911 40563432 -202100921 - L1PB1 LINE L1 0 6151 5656 1980 128 0 60 chr1 40563680 40563999 -202100354 - AluSx SINE Alu -12 300 1 343 274 12 79 chr1 40564180 40564344 -202100009 - L2 LINE L2 -2 3311 3159 516 220 89 21 chr1 40564396 40564576 -202099777 + MIR SINE MIR 2 250 -12 476 294 156 8 chr1 40564569 40564954 -202099399 - L2 LINE L2 -246 3067 2632 * 330 300 30 0 chr1 40566874 40566974 -202097379 - MIR SINE MIR -50 212 110 207 121 0 0 chr1 40567359 40567392 -202096961 - L2 LINE L2 -1 3271 3239 229 192 279 0 chr1 40567446 40567550 -202096803 + MER104 DNA Tc2 1 133 -47 202 167 28 0 chr1 40567708 40567744 -202096609 - MIR SINE MIR -109 153 117 514 184 0 51 chr1 40567746 40567844 -202096509 + 5S rRNA rRNA 1 93 -28 284 263 26 0 chr1 40567844 40567920 -202096433 - MIR SINE MIR -152 110 33 466 317 7 7 chr1 40568486 40568631 -202095722 + MIR SINE MIR 9 153 -109 1555 176 62 79 chr1 40568631 40569177 -202095176 - MLT1E LTR MaLR 0 593 88 198 333 26 44 chr1 40569203 40569317 -202095036 + MIR SINE MIR 151 262 0 320 314 17 8 chr1 40569918 40570036 -202094317 - MIR SINE MIR -63 145 27 225 0 0 0 chr1 40570042 40570067 -202094286 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 272 269 37 37 chr1 40570067 40570175 -202094178 - L2 LINE L2 -13 3259 3152 524 270 124 17 chr1 40570897 40571075 -202093278 - L2 LINE L2 -36 3277 3081 479 181 69 9 chr1 40571177 40571293 -202093060 + MIR SINE MIR 74 196 -66 237 277 0 0 chr1 40571596 40571661 -202092692 + (TG)n Simple_repeat Simple_repeat 2 66 0 184 348 51 17 chr1 40572103 40572221 -202092132 + MIR SINE MIR 87 208 -54 478 352 101 28 chr1 40572838 40572923 -202091430 - L3 LINE CR1 -235 1342 1265 813 243 6 6 chr1 40572923 40573100 -202091253 + MER5B DNA MER1_type 1 177 -1 478 352 101 28 chr1 40573100 40573409 -202090944 - L3 LINE CR1 -312 1265 919 229 257 158 26 chr1 40574715 40574867 -202089486 + L3b LINE CR1 1254 1425 -158 410 302 42 37 chr1 40575478 40575693 -202088660 + L1ME4a LINE L1 5304 5519 -2289 388 282 107 0 chr1 40576148 40576279 -202088074 + L1ME4a LINE L1 5475 5619 -502 2736 253 45 20 chr1 40576811 40577642 -202086711 - L1ME3 LINE L1 -1 6161 5311 807 279 106 16 chr1 40577598 40578090 -202086263 + L1ME4a LINE L1 5586 6121 0 * 491 171 114 29 chr1 40578436 40578541 -202085812 + L2 LINE L2 3200 3313 0 513 306 19 19 chr1 40578553 40578762 -202085591 - MARNA DNA Mariner -22 564 356 198 326 156 21 chr1 40579012 40579153 -202085200 + L2 LINE L2 2720 2879 -435 293 259 82 12 chr1 40579335 40579420 -202084933 - MER5B DNA MER1_type 0 178 88 1008 264 99 8 chr1 40579457 40579809 -202084544 + MLT1J1 LTR MaLR 63 446 0 561 195 70 16 chr1 40579809 40579937 -202084416 - MER5B DNA MER1_type -40 138 4 524 284 170 23 chr1 40580965 40581271 -202083082 + L2 LINE L2 2936 3286 -27 821 239 45 61 chr1 40581273 40581656 -202082697 + MLT1H LTR MaLR 39 533 -16 534 259 111 12 chr1 40582134 40582296 -202082057 - MIR3 SINE MIR -11 197 20 201 191 24 0 chr1 40582543 40582585 -202081768 - MIR SINE MIR -13 249 207 196 250 33 17 chr1 40583344 40583404 -202080949 + MIR SINE MIR 77 137 -71 199 324 28 14 chr1 40584237 40584308 -202080045 - MIR SINE MIR -163 99 28 323 236 56 22 chr1 40584569 40584658 -202079695 + MIR SINE MIR 45 136 -126 229 269 15 0 chr1 40584658 40584725 -202079628 + MIR SINE MIR 100 167 -95 524 286 19 0 chr1 40585855 40586009 -202078344 + MIR SINE MIR 77 233 -29 2209 98 3 48 chr1 40586021 40586336 -202078017 - AluSq SINE Alu -12 301 1 370 331 69 59 chr1 40586387 40586707 -202077646 - L2 LINE L2 -36 3236 2914 187 209 47 0 chr1 40586817 40586860 -202077493 - L2 LINE L2 -569 2745 2701 207 167 0 0 chr1 40587149 40587191 -202077162 + GA-rich Low_complexity Low_complexity 2 43 0 395 244 24 24 chr1 40587492 40587619 -202076734 + MIR SINE MIR 21 147 -61 243 157 157 0 chr1 40588229 40588280 -202076073 + MER5A DNA MER1_type 41 99 -90 * 355 290 71 41 chr1 40588244 40588413 -202075940 + MIR SINE MIR 15 188 -74 280 229 124 38 chr1 40589314 40589419 -202074934 - MIR SINE MIR -72 136 23 415 303 63 69 chr1 40589527 40590005 -202074348 + L2 LINE L2 2831 3305 -8 * 1452 257 217 3 chr1 40589977 40590728 -202073625 - L2 LINE L2 -1 3312 2420 265 231 15 0 chr1 40590729 40590794 -202073559 + MLT1K LTR MaLR 500 565 -23 399 328 85 0 chr1 40591106 40591283 -202073070 - MIR SINE MIR -24 238 47 245 283 33 0 chr1 40591343 40591435 -202072918 + MIR3 SINE MIR 72 166 -42 240 289 0 0 chr1 40592289 40592341 -202072012 + L2 LINE L2 3262 3313 0 375 132 0 0 chr1 40592504 40592572 -202071781 + (TC)n Simple_repeat Simple_repeat 1 68 0 565 291 15 34 chr1 40592988 40593194 -202071159 - L2 LINE L2 0 3313 3112 706 295 119 38 chr1 40593195 40593565 -202070788 + LTR33 LTR ERVL 1 400 -121 239 245 0 0 chr1 40594131 40594184 -202070169 - MIR SINE MIR -133 129 77 642 300 170 8 chr1 40594197 40594597 -202069756 - LTR33 LTR ERVL -53 468 4 342 296 15 15 chr1 40595579 40595711 -202068642 - MIR SINE MIR -119 143 12 234 320 0 0 chr1 40596276 40596351 -202068002 - MIR SINE MIR -89 119 45 375 284 142 8 chr1 40596475 40596609 -202067744 + MIR SINE MIR 60 211 -51 432 276 135 12 chr1 40596946 40597109 -202067244 + MIR SINE MIR 80 262 0 202 391 36 7 chr1 40597137 40597275 -202067078 + MIR SINE MIR 106 247 -15 250 290 32 0 chr1 40597382 40597444 -202066909 + L3 LINE CR1 1419 1482 -95 497 320 17 17 chr1 40598794 40598975 -202065378 - MIR SINE MIR -65 197 17 267 239 94 17 chr1 40599187 40599304 -202065049 - L2 LINE L2 -22 3250 3125 429 226 31 50 chr1 40599542 40599701 -202064652 + GA-rich Low_complexity Low_complexity 1 156 0 184 372 32 0 chr1 40601177 40601271 -202063082 + MIR3 SINE MIR 82 178 -30 405 207 35 0 chr1 40601548 40601635 -202062718 - MIR SINE MIR -80 182 93 * 916 274 116 25 chr1 40601633 40602388 -202061965 + L2 LINE L2 2443 3270 -2 200 205 0 0 chr1 40602389 40602428 -202061925 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 276 77 0 0 chr1 40602681 40602720 -202061633 + (CA)n Simple_repeat Simple_repeat 1 39 0 2188 90 21 0 chr1 40603121 40603410 -202060943 - AluY SINE Alu -13 298 4 252 0 0 0 chr1 40604231 40604259 -202060094 + (CA)n Simple_repeat Simple_repeat 1 28 0 966 137 0 0 chr1 40604904 40605035 -202059318 + FLAM_C SINE Alu 1 131 -12 534 130 28 0 chr1 40606177 40606285 -202058068 + CT-rich Low_complexity Low_complexity 1 111 0 281 315 90 39 chr1 40606350 40606528 -202057825 + L2 LINE L2 2684 2870 -444 234 371 78 31 chr1 40606581 40606875 -202057478 + L2 LINE L2 2999 3306 -7 189 0 0 0 chr1 40606875 40606896 -202057457 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 620 300 94 13 chr1 40608135 40608368 -202055985 + MIR SINE MIR 1 252 -10 471 228 69 0 chr1 40608413 40608514 -202055839 + L2 LINE L2 3203 3310 -3 329 196 0 0 chr1 40608541 40608597 -202055756 + L2 LINE L2 3254 3309 -4 575 288 93 13 chr1 40609015 40609251 -202055102 + MIR SINE MIR 8 262 0 310 367 9 9 chr1 40609455 40609564 -202054789 - MIR SINE MIR -66 142 34 379 392 13 0 chr1 40610048 40610201 -202054152 + MIR SINE MIR 11 165 -97 245 242 0 0 chr1 40611265 40611327 -202053026 + (TG)n Simple_repeat Simple_repeat 2 63 0 253 241 12 0 chr1 40611345 40611515 -202052838 + (TG)n Simple_repeat Simple_repeat 2 173 0 282 247 0 0 chr1 40611531 40611693 -202052660 + (TG)n Simple_repeat Simple_repeat 2 163 0 300 53 0 0 chr1 40611800 40611838 -202052515 + (TG)n Simple_repeat Simple_repeat 1 38 0 2952 131 2 12 chr1 40612831 40613321 -202051032 + L1MA4 LINE L1 5536 6020 -280 199 247 82 0 chr1 40613873 40613946 -202050407 - MIR SINE MIR -165 97 19 436 325 63 5 chr1 40614262 40614453 -202049900 - MIR SINE MIR -13 249 48 453 296 64 71 chr1 40615019 40615299 -202049054 + L2 LINE L2 2993 3270 -2 329 322 0 0 chr1 40615470 40615557 -202048796 + L1MC4 LINE L1 6617 6703 -1339 525 259 24 30 chr1 40615581 40615747 -202048606 + Charlie8 DNA MER1_type 117 281 -2136 241 284 14 0 chr1 40615735 40615809 -202048544 + Charlie8 DNA MER1_type 2341 2415 -2 * 2345 106 0 3 chr1 40616347 40616650 -202047703 + AluSg SINE Alu 1 302 -8 475 286 51 63 chr1 40616884 40617139 -202047214 - MIR SINE MIR -6 256 5 2494 92 0 0 chr1 40619123 40619429 -202044924 + AluSx SINE Alu 1 306 -6 377 295 86 0 chr1 40619429 40619568 -202044785 - MIR SINE MIR -79 183 33 186 194 28 0 chr1 40620052 40620088 -202044265 + MIR SINE MIR 37 73 -135 919 257 4 42 chr1 40620145 40620364 -202043989 + MIR SINE MIR 8 217 -45 2274 108 0 3 chr1 40620364 40620671 -202043682 + AluSx SINE Alu 1 306 -6 919 257 4 42 chr1 40620671 40620716 -202043637 + MIR SINE MIR 217 262 0 522 301 117 12 chr1 40621024 40621273 -202043080 - L2 LINE L2 -3 3310 3036 41 66 0 0 chr1 40621297 40621373 -202042980 + AT_rich Low_complexity Low_complexity 1 76 0 265 242 0 0 chr1 40621393 40621459 -202042894 - L2 LINE L2 -333 2980 2915 509 306 28 0 chr1 40622019 40622163 -202042190 - MIR SINE MIR -21 241 94 2276 98 0 14 chr1 40622165 40622451 -202041902 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr1 40622451 40622476 -202041877 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 542 274 58 49 chr1 40622642 40622865 -202041488 - MIR SINE MIR -10 252 28 571 221 16 0 chr1 40622921 40623043 -202041310 + MIR3 SINE MIR 33 156 -52 2276 94 0 3 chr1 40623368 40623654 -202040699 - AluSq SINE Alu -19 294 10 225 307 11 34 chr1 40624386 40624474 -202039879 + L2 LINE L2 3227 3312 -1 337 250 74 34 chr1 40625018 40625166 -202039187 + L1ME4a LINE L1 5968 6121 0 258 302 0 12 chr1 40625183 40625269 -202039084 + GA-rich Low_complexity Low_complexity 2 86 0 525 276 20 60 chr1 40625778 40625977 -202038376 + MIR SINE MIR 59 249 -13 203 295 232 11 chr1 40626808 40626998 -202037355 + L2 LINE L2 2717 2948 -366 260 159 0 0 chr1 40627241 40627285 -202037068 + MIR SINE MIR 212 255 -7 2896 62 9 8 chr1 40627299 40627737 -202036616 + L1PA8A LINE L1 5730 6168 -4 531 45 0 0 chr1 40627738 40627804 -202036549 + (TA)n Simple_repeat Simple_repeat 2 67 0 461 315 116 16 chr1 40627854 40628105 -202036248 + L1ME LINE L1 5387 5662 -459 1841 245 72 33 chr1 40628123 40628160 -202036193 - MLT1E LTR MaLR 0 593 559 1850 156 3 7 chr1 40628160 40628443 -202035910 + AluJb SINE Alu 1 282 -30 234 0 0 0 chr1 40628452 40628478 -202035875 + (CA)n Simple_repeat Simple_repeat 1 26 0 1841 245 72 33 chr1 40628478 40629001 -202035352 - MLT1E LTR MaLR -41 552 1 234 193 0 0 chr1 40629001 40629058 -202035295 + (TG)n Simple_repeat Simple_repeat 1 57 0 221 340 32 59 chr1 40630236 40630489 -202033864 - L2 LINE L2 -208 3064 2819 25 0 0 0 chr1 40630666 40630691 -202033662 + AT_rich Low_complexity Low_complexity 1 25 0 508 275 227 5 chr1 40630733 40630940 -202033413 - MIR SINE MIR -1 261 9 464 304 42 28 chr1 40630963 40631180 -202033173 + L3 LINE CR1 666 885 -692 4317 43 0 7 chr1 40631546 40632104 -202032249 - L1PA5 LINE L1 0 6154 5601 1693 128 4 12 chr1 40632341 40632564 -202031789 + MLT1A1 LTR MaLR 110 332 -33 2285 137 6 0 chr1 40632564 40632928 -202031425 + MER47A DNA MER2_type 1 366 0 1693 128 4 12 chr1 40632928 40632962 -202031391 + MLT1A1 LTR MaLR 332 365 0 430 264 0 0 chr1 40633017 40633127 -202031226 - MIR SINE MIR -3 259 150 564 240 129 52 chr1 40633129 40633513 -202030840 + MLT1J1 LTR MaLR 3 457 -54 316 271 101 31 chr1 40633549 40633678 -202030675 - MIR SINE MIR -110 152 15 1653 161 19 16 chr1 40633705 40634027 -202030326 + L1MC2 LINE L1 5712 6034 -310 1541 151 82 0 chr1 40634080 40634372 -202029981 + L1MC2 LINE L1 6020 6335 -9 488 170 40 0 chr1 40634456 40634556 -202029797 - MIR SINE MIR -69 193 90 201 222 0 0 chr1 40634947 40635010 -202029343 + (CA)n Simple_repeat Simple_repeat 2 64 0 370 235 196 50 chr1 40635648 40635827 -202028526 + MIR SINE MIR 44 248 -14 710 264 23 6 chr1 40635857 40636031 -202028322 - MIR3 SINE MIR -23 185 9 1526 215 11 0 chr1 40636962 40637083 -202027270 + AluJo SINE Alu 1 119 -193 197 33 33 0 chr1 40637083 40637113 -202027240 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1526 215 11 0 chr1 40637113 40637270 -202027083 + AluJo SINE Alu 119 282 -30 2349 95 3 0 chr1 40637653 40637947 -202026406 + AluSg1 SINE Alu 1 295 -14 409 135 14 0 chr1 40639094 40639168 -202025185 - L1PB1 LINE L1 -125 6026 5952 791 106 0 16 chr1 40639168 40639289 -202025064 + L1PB1 LINE L1 6031 6151 0 1029 132 0 25 chr1 40639830 40639989 -202024364 - AluJb SINE Alu -21 291 137 518 303 99 0 chr1 40640475 40640686 -202023667 - MIR SINE MIR 0 262 31 2213 109 3 0 chr1 40641107 40641432 -202022921 + AluSx SINE Alu 1 326 0 1770 151 36 88 chr1 40641722 40642106 -202022247 + THE1B LTR MaLR 1 364 0 180 256 128 0 chr1 40642163 40642241 -202022112 + L3 LINE CR1 940 1027 -550 798 241 35 65 chr1 40642350 40642640 -202021713 - Charlie8 DNA MER1_type -2135 282 2 280 298 58 68 chr1 40642648 40642839 -202021514 + L3 LINE CR1 1045 1233 -344 694 160 8 40 chr1 40642865 40642990 -202021363 - L1MC1 LINE L1 -14 6319 6199 860 138 167 60 chr1 40643231 40643497 -202020856 - L1MC1 LINE L1 -141 6192 5897 337 150 17 0 chr1 40643510 40643570 -202020783 - MLT1H1 LTR MaLR 0 555 495 1319 131 5 45 chr1 40643579 40643800 -202020553 + AluJo SINE Alu 89 300 -12 1134 169 5 0 chr1 40643806 40644001 -202020352 + L1MB4 LINE L1 5985 6180 0 259 294 68 0 chr1 40644229 40644358 -202019995 - MLT1H1 LTR MaLR -245 304 120 * 1438 246 57 15 chr1 40644356 40644906 -202019447 - MLT2E LTR ERVL -9 619 1 498 286 23 8 chr1 40645095 40645228 -202019125 + MIR SINE MIR 41 175 -87 269 314 132 19 chr1 40645386 40645545 -202018808 + L3 LINE CR1 1334 1510 -67 1129 210 83 7 chr1 40645648 40645938 -202018415 + L1ME4a LINE L1 5526 5837 -284 355 223 178 6 chr1 40646804 40646877 -202017476 + L1ME4a LINE L1 5849 5908 -213 333 82 0 0 chr1 40646877 40646926 -202017427 + (CA)n Simple_repeat Simple_repeat 2 50 0 355 223 178 6 chr1 40646926 40647009 -202017344 + L1ME4a LINE L1 5908 6032 -89 473 217 0 8 chr1 40647318 40647438 -202016915 + GA-rich Low_complexity Low_complexity 1 119 0 503 244 194 28 chr1 40647865 40648045 -202016308 - MIR SINE MIR -14 248 39 2259 146 30 6 chr1 40649192 40649556 -202014797 + THE1C LTR MaLR 3 375 0 190 194 0 28 chr1 40650373 40650409 -202013944 + MIR SINE MIR 223 257 -5 424 272 125 0 chr1 40651259 40651395 -202012958 - MIR3 SINE MIR -26 182 30 258 359 119 40 chr1 40652355 40652709 -202011644 - L3 LINE CR1 -338 1239 858 191 269 97 81 chr1 40652784 40653082 -202011271 + L2 LINE L2 2633 2935 -379 330 283 58 36 chr1 40653086 40653224 -202011129 + MIR SINE MIR 29 169 -93 364 264 72 123 chr1 40653331 40653623 -202010730 + L2 LINE L2 2992 3268 -4 586 269 16 83 chr1 40653723 40653965 -202010388 - MIR SINE MIR 0 262 37 2612 200 34 19 chr1 40653985 40654312 -202010041 - L1MD3 LINE L1 -10 7985 7645 2089 113 7 55 chr1 40654312 40654621 -202009732 - AluSq SINE Alu -19 294 1 2612 200 34 19 chr1 40654621 40654859 -202009494 - L1MD3 LINE L1 -350 7645 7412 259 298 43 78 chr1 40655480 40655621 -202008732 + L2 LINE L2 3128 3263 -9 308 343 36 14 chr1 40655968 40656108 -202008245 + L3 LINE CR1 940 1082 -495 321 344 56 14 chr1 40656157 40656395 -202007958 - L2 LINE L2 -275 2997 2749 426 20 0 0 chr1 40656452 40656503 -202007850 + (CA)n Simple_repeat Simple_repeat 2 52 0 267 31 0 0 chr1 40656502 40656534 -202007819 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 468 302 59 35 chr1 40657059 40657261 -202007092 - LTR67 LTR ERVL -254 303 97 2643 86 47 5 chr1 40657320 40657704 -202006649 + MLT2A1 LTR ERVL 1 400 -44 258 82 115 33 chr1 40657762 40657813 -202006540 + Ricksha DNA DNA 848 903 -2343 43793 67 4 6 chr1 40657813 40663479 -202000874 + HERVL-A1-A1 LTR ERVL 1 5654 0 2907 78 54 60 chr1 40663479 40663926 -202000427 + MLT2A1 LTR ERVL 1 444 0 302 283 195 25 chr1 40665495 40665654 -201998699 + MIR SINE MIR 7 192 -70 813 164 0 0 chr1 40666245 40666361 -201997992 + FLAM_C SINE Alu 1 116 -27 847 181 118 13 chr1 40666811 40667049 -201997304 + L1ME2 LINE L1 5742 6004 -160 1014 196 25 1 chr1 40667067 40667306 -201997047 + MER33 DNA MER1_type 1 212 -89 37402 80 5 10 chr1 40667309 40673483 -201990870 - L1PA6 LINE L1 0 6154 11 457 134 25 67 chr1 40673495 40673523 -201990830 + MER33 DNA MER1_type 211 239 -2346 2115 143 0 10 chr1 40673523 40673830 -201990523 - AluSg SINE Alu -6 304 1 457 134 25 67 chr1 40673830 40673920 -201990433 + MER33 DNA MER1_type 239 324 0 413 171 90 54 chr1 40673923 40674034 -201990319 + L1ME2 LINE L1 6048 6162 -2 337 237 11 54 chr1 40674034 40674127 -201990226 - L2 LINE L2 -14 3258 3170 251 160 20 20 chr1 40675224 40675274 -201989079 - L2 LINE L2 -16 3256 3207 473 298 0 21 chr1 40675298 40675439 -201988914 + L2 LINE L2 2650 2787 -527 887 328 44 38 chr1 40675820 40676278 -201988075 + L2 LINE L2 2792 3249 -23 197 321 71 0 chr1 40676293 40676377 -201987976 - L2 LINE L2 -239 3033 2944 1009 153 5 101 chr1 40676384 40676465 -201987888 + MER5A DNA MER1_type 1 88 -101 2156 121 0 0 chr1 40676465 40676912 -201987441 + AluSg SINE Alu 1 447 0 1009 153 5 101 chr1 40676912 40677036 -201987317 + MER5A DNA MER1_type 88 189 0 891 186 108 20 chr1 40677044 40677248 -201987105 - MER58A DNA MER1_type 0 224 3 2394 84 0 26 chr1 40677284 40677456 -201986897 - AluSx SINE Alu -11 301 139 2333 109 0 3 chr1 40677456 40677767 -201986586 - AluSq SINE Alu -3 310 1 2394 84 0 26 chr1 40677767 40677903 -201986450 - AluSx SINE Alu -173 139 1 2317 88 0 14 chr1 40677915 40678212 -201986141 - AluSx SINE Alu -14 298 6 531 264 104 0 chr1 40678377 40678540 -201985813 - MIR SINE MIR -6 256 77 1740 159 55 7 chr1 40678751 40679041 -201985312 + AluJo SINE Alu 1 304 -8 2383 91 3 0 chr1 40680623 40680919 -201983434 - AluSp SINE Alu -16 297 1 271 206 298 15 chr1 40681184 40681315 -201983038 + MIR3 SINE MIR 11 178 -30 1090 177 10 20 chr1 40681683 40681886 -201982467 - MIR SINE MIR -12 250 50 256 232 36 0 chr1 40683003 40683059 -201981294 + L2 LINE L2 3256 3313 0 271 315 180 9 chr1 40683069 40683180 -201981173 + L3 LINE CR1 1298 1427 -150 764 242 82 46 chr1 40683180 40683399 -201980954 - MIR SINE MIR -10 252 26 203 268 27 71 chr1 40683408 40683520 -201980833 + L3 LINE CR1 1430 1536 -41 292 325 125 12 chr1 40684732 40684892 -201979461 + MIR SINE MIR 13 190 -72 190 185 92 62 chr1 40684858 40684923 -201979430 - L2 LINE L2 -560 2754 2688 * 2088 140 3 0 chr1 40684926 40685226 -201979127 + AluJo SINE Alu 3 303 -9 1028 199 12 49 chr1 40685365 40685611 -201978742 + MIR SINE MIR 5 241 -21 282 250 15 15 chr1 40685631 40685699 -201978654 + L2 LINE L2 3244 3311 -2 181 274 98 0 chr1 40685702 40685753 -201978600 + L2 LINE L2 3200 3255 -17 699 276 136 5 chr1 40686590 40686811 -201977542 + MIR SINE MIR 13 262 0 2399 106 0 0 chr1 40689182 40689484 -201974869 + AluSx SINE Alu 2 303 -9 200 260 0 0 chr1 40690002 40690052 -201974301 + (TG)n Simple_repeat Simple_repeat 1 50 0 468 245 28 42 chr1 40690250 40690393 -201973960 + MIR3 SINE MIR 35 175 -33 842 129 129 0 chr1 40690540 40690672 -201973681 + AluSg/x SINE Alu 149 297 -15 1162 173 26 26 chr1 40690725 40690951 -201973402 + L1MB5 LINE L1 5941 6166 -8 1121 113 0 0 chr1 40690955 40691106 -201973247 - AluSc SINE Alu -7 302 152 223 217 109 33 chr1 40691693 40691785 -201972568 + L2 LINE L2 3124 3222 -50 925 311 8 0 chr1 40691812 40692056 -201972297 + MIR SINE MIR 17 262 0 410 231 11 0 chr1 40692135 40692226 -201972127 - MIR SINE MIR -62 146 55 403 132 88 79 chr1 40692605 40692719 -201971634 + L2 LINE L2 3181 3295 -18 201 329 0 37 chr1 40693680 40693762 -201970591 + MIR SINE MIR 66 144 -64 407 294 73 7 chr1 40693809 40693945 -201970408 - MIR3 SINE MIR -62 146 2 189 219 0 0 chr1 40693945 40693976 -201970377 - L2 LINE L2 -18 3254 3224 951 130 8 0 chr1 40694578 40694709 -201969644 + FLAM_C SINE Alu 2 133 -10 1869 160 0 4 chr1 40694716 40694997 -201969356 + AluJb SINE Alu 1 280 -32 631 253 81 41 chr1 40695006 40695227 -201969126 - MIR SINE MIR 0 262 33 180 278 229 0 chr1 40695369 40695513 -201968840 + L2 LINE L2 2340 2516 -798 189 282 70 0 chr1 40695716 40695787 -201968566 + MIR SINE MIR 63 138 -124 210 352 145 19 chr1 40695978 40696137 -201968216 - MIR SINE MIR 0 262 84 496 222 8 26 chr1 40696263 40696380 -201967973 + MIR SINE MIR 105 219 -43 2185 124 56 12 chr1 40696570 40696893 -201967460 - MER1B DNA MER1_type 0 337 1 2588 13 13 3 chr1 40697984 40698287 -201966066 + L1PA3 LINE L1 5850 6155 0 739 200 58 37 chr1 40698604 40698794 -201965559 + MER117 DNA MER1_type 4 197 0 1476 149 12 40 chr1 40699442 40699691 -201964662 + AluJo SINE Alu 59 300 -12 1754 179 24 3 chr1 40700104 40700395 -201963958 + AluJo SINE Alu 1 297 -15 485 255 65 38 chr1 40700462 40700646 -201963707 + L2 LINE L2 3120 3308 -5 261 139 0 0 chr1 40700658 40700701 -201963652 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 814 212 62 17 chr1 40700833 40701012 -201963341 + MIR SINE MIR 63 249 -13 249 69 35 35 chr1 40701201 40701259 -201963094 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 590 242 15 8 chr1 40702316 40702448 -201961905 + MIR3 SINE MIR 30 162 -46 2664 147 29 2 chr1 40703820 40704234 -201960119 + MSTB LTR MaLR 2 426 0 254 261 11 0 chr1 40704296 40704371 -201959982 + MIR SINE MIR 59 137 -71 376 289 0 26 chr1 40704619 40704733 -201959620 - MIR SINE MIR -145 117 7 355 274 57 51 chr1 40705074 40705231 -201959122 - MER5A DNA MER1_type 0 189 32 493 281 0 44 chr1 40705365 40705500 -201958853 - MIR3 SINE MIR -41 167 39 654 154 34 69 chr1 40706007 40706182 -201958171 + MER3 DNA MER1_type 1 122 -87 892 139 29 46 chr1 40706182 40706333 -201958020 - MIR SINE MIR -81 181 32 1880 161 55 0 chr1 40706333 40706625 -201957728 - AluJb SINE Alu -4 308 1 892 139 29 46 chr1 40706625 40706646 -201957707 - MIR SINE MIR -230 32 12 2332 110 3 0 chr1 40707474 40707783 -201956570 + AluSx SINE Alu 1 310 -2 713 289 138 17 chr1 40708697 40708995 -201955358 - L2 LINE L2 0 3313 2980 3887 118 34 114 chr1 40708995 40709231 -201955122 + Tigger3b DNA MER2_type 1 254 -2774 2316 103 3 0 chr1 40709231 40709532 -201954821 + AluSq SINE Alu 5 306 -7 3887 118 34 114 chr1 40709532 40710196 -201954157 + Tigger3b DNA MER2_type 254 829 -402 2199 120 0 16 chr1 40710196 40710513 -201953840 + AluSx SINE Alu 1 312 0 411 281 59 26 chr1 40710543 40710696 -201953657 - L2 LINE L2 -317 2996 2839 494 204 51 98 chr1 40710710 40710915 -201953438 - MIR SINE MIR -61 147 7 749 245 33 27 chr1 40711586 40711770 -201952583 - MIR SINE MIR -58 204 20 2362 108 0 0 chr1 40711907 40712214 -201952139 + AluSc SINE Alu 1 307 -2 245 313 31 23 chr1 40712214 40712332 -201952021 + GA-rich Low_complexity Low_complexity 13 134 0 2182 142 0 0 chr1 40712486 40712788 -201951565 - AluJb SINE Alu -10 302 1 327 244 24 83 chr1 40712844 40713012 -201951341 + L2 LINE L2 2904 3061 -211 1114 233 54 24 chr1 40713124 40713455 -201950898 + MER2 DNA MER2_type 4 344 0 2157 91 37 14 chr1 40713517 40713814 -201950539 + AluSx SINE Alu 1 304 -8 287 361 60 17 chr1 40713962 40714264 -201950089 - L1MC/D LINE L1 -401 5720 5449 250 128 43 21 chr1 40714264 40714311 -201950042 + MIR SINE MIR 153 200 -62 394 323 18 48 chr1 40714446 40714613 -201949740 + MIR SINE MIR 47 208 -54 1306 132 148 23 chr1 40714786 40715112 -201949241 - MSTA LTR MaLR 0 428 30 213 65 0 0 chr1 40765116 40765147 -201899206 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 28 48 0 0 chr1 40765424 40765466 -201898887 + GC_rich Low_complexity Low_complexity 1 42 0 249 83 0 0 chr1 40766310 40766346 -201898007 + (TG)n Simple_repeat Simple_repeat 1 36 0 376 303 78 43 chr1 40766490 40766721 -201897632 - L1ME3A LINE L1 -6 6164 5926 456 241 99 28 chr1 40766756 40767009 -201897344 - L1ME3A LINE L1 -214 5950 5680 196 242 93 94 chr1 40767015 40767140 -201897213 - MIR SINE MIR -66 142 14 199 271 34 0 chr1 40767596 40767655 -201896698 - MIR SINE MIR -1 261 201 278 295 105 59 chr1 40767657 40767962 -201896391 + L2 LINE L2 2923 3241 -31 2357 69 0 53 chr1 40768558 40768878 -201895475 - AluY SINE Alu -8 303 1 2039 190 57 124 chr1 40769057 40769300 -201895053 + L1MD3 LINE L1 6763 7021 -1021 1868 141 17 27 chr1 40769300 40769599 -201894754 - AluJo SINE Alu -16 296 1 2039 190 57 124 chr1 40769599 40769695 -201894658 + L1MD3 LINE L1 7021 7122 -920 306 204 11 80 chr1 40769695 40769783 -201894570 + MLT1F1 LTR MaLR 44 125 -442 2039 190 57 124 chr1 40769783 40770412 -201893941 + L1MD3 LINE L1 7122 7791 -251 1764 104 25 12 chr1 40770412 40770691 -201893662 + AluSx SINE Alu 44 312 0 2039 190 57 124 chr1 40770691 40770719 -201893634 + L1MD3 LINE L1 7791 7819 -223 300 111 0 0 chr1 40770719 40770764 -201893589 + (TA)n Simple_repeat Simple_repeat 1 45 0 2039 190 57 124 chr1 40770764 40770897 -201893456 + L1MD3 LINE L1 7819 8037 -5 23 54 0 0 chr1 40770904 40770941 -201893412 + AT_rich Low_complexity Low_complexity 1 37 0 434 271 34 90 chr1 40771148 40771209 -201893144 - MIR3 SINE MIR 0 208 145 2253 126 0 13 chr1 40771209 40771519 -201892834 - AluSx SINE Alu -6 306 1 434 271 34 90 chr1 40771519 40771634 -201892719 - MIR3 SINE MIR -63 145 42 304 242 164 0 chr1 40772213 40772341 -201892012 + L2 LINE L2 3121 3269 -3 2181 108 0 56 chr1 40772916 40773240 -201891113 - AluSg SINE Alu -2 308 3 1992 163 0 3 chr1 40773256 40773562 -201890791 - AluSx SINE Alu -7 305 1 439 266 166 69 chr1 40773562 40773881 -201890472 + MLT1K LTR MaLR 170 519 -69 274 280 86 21 chr1 40774043 40774136 -201890217 - MIR3 SINE MIR -45 163 65 1933 128 0 76 chr1 40774165 40774493 -201889860 - AluSx SINE Alu -9 303 1 365 322 20 40 chr1 40774623 40774772 -201889581 - MIR3 SINE MIR -62 146 1 434 216 198 0 chr1 40775130 40775246 -201889107 + MER91C DNA MER1_type 1 139 -1 2176 118 0 0 chr1 40775694 40775974 -201888379 + AluSq SINE Alu 1 280 -33 2407 75 3 0 chr1 40776131 40776424 -201887929 - AluY SINE Alu -17 294 1 259 297 117 8 chr1 40778961 40779089 -201885264 - L3 LINE CR1 -43 1534 1393 736 211 0 0 chr1 40780342 40780475 -201883878 + FLAM_A SINE Alu 1 133 0 1820 159 78 50 chr1 40781462 40781504 -201882849 + MSTD LTR MaLR 3 42 -354 2407 121 28 6 chr1 40781504 40781860 -201882493 + THE1B LTR MaLR 1 364 0 1820 159 78 50 chr1 40781860 40781993 -201882360 + MSTD LTR MaLR 42 170 -226 2465 91 0 0 chr1 40781993 40782290 -201882063 + AluSg SINE Alu 1 297 -13 1820 159 78 50 chr1 40782290 40782496 -201881857 + MSTD LTR MaLR 170 396 0 225 250 17 0 chr1 40782622 40782682 -201881671 - MIR SINE MIR -30 232 172 3426 151 45 10 chr1 40782893 40783494 -201880859 + LTR26E LTR ERV1 1 622 0 828 261 119 3 chr1 40783672 40783975 -201880378 + L2 LINE L2 2849 3186 -127 1945 216 140 70 chr1 40783995 40784708 -201879645 + MER21B LTR ERV1 40 802 -61 330 339 31 0 chr1 40784718 40784845 -201879508 + L2 LINE L2 3183 3313 0 345 271 196 0 chr1 40785275 40785382 -201878971 + L2 LINE L2 3142 3269 -3 2298 101 7 3 chr1 40785639 40785935 -201878418 - AluSg SINE Alu -13 297 1 36 0 0 0 chr1 40785937 40785973 -201878380 + AT_rich Low_complexity Low_complexity 1 36 0 186 274 98 29 chr1 40786760 40786862 -201877491 + MIR SINE MIR 35 143 -119 2167 97 16 3 chr1 40788573 40788881 -201875472 + AluSx SINE Alu 1 312 0 689 298 57 85 chr1 40789136 40789887 -201874466 + HAL1 LINE L1 1 730 -1777 2074 131 0 0 chr1 40789899 40790197 -201874156 + AluSx SINE Alu 1 298 -14 267 218 53 135 chr1 40790223 40790305 -201874048 + HAL1 LINE L1 743 811 -1696 1639 195 0 7 chr1 40790305 40790602 -201873751 - AluJo SINE Alu -17 295 1 267 218 53 135 chr1 40790602 40790652 -201873701 + HAL1 LINE L1 811 864 -1643 615 88 0 78 chr1 40790667 40790769 -201873584 + AluJb SINE Alu 212 305 -7 844 267 204 48 chr1 40790792 40791008 -201873345 + HAL1 LINE L1 899 1080 -1427 2283 81 3 0 chr1 40791008 40791304 -201873049 + AluSp SINE Alu 1 297 -16 844 267 204 48 chr1 40791304 40791358 -201872995 + HAL1 LINE L1 1080 1124 -1383 2367 84 0 3 chr1 40791358 40791668 -201872685 + AluSc SINE Alu 1 309 0 844 267 204 48 chr1 40791668 40791876 -201872477 + HAL1 LINE L1 1124 1453 -1054 989 165 0 29 chr1 40791882 40792052 -201872301 + FRAM SINE Alu 1 157 -19 1214 283 175 12 chr1 40792059 40792649 -201871704 + HAL1 LINE L1 1470 2155 -352 664 68 11 0 chr1 40792649 40792737 -201871616 + MER72 LTR ERV1 606 694 -28 368 254 107 78 chr1 40792848 40793053 -201871300 + HAL1 LINE L1 2250 2460 -47 227 238 0 48 chr1 40793104 40793167 -201871186 - L2 LINE L2 -246 3067 3008 2275 86 10 0 chr1 40793402 40793705 -201870648 - AluSg SINE Alu -4 306 1 1085 136 0 0 chr1 40793708 40793870 -201870483 - AluJ SINE Alu -17 295 134 187 221 58 23 chr1 40795855 40795941 -201868412 + L2 LINE L2 2343 2431 -883 541 354 94 0 chr1 40797501 40797724 -201866629 + MIR SINE MIR 9 252 -10 1731 143 7 27 chr1 40797848 40798149 -201866204 - AluJo SINE Alu -17 295 1 1249 173 36 122 chr1 40798163 40798492 -201865861 - AluJb SINE Alu 0 302 2 251 127 0 73 chr1 40798492 40798547 -201865806 - AluJ SINE Alu -166 136 86 477 198 69 0 chr1 40798696 40798797 -201865556 + MIR SINE MIR 37 144 -118 2233 92 0 13 chr1 40799011 40799178 -201865175 - AluSg SINE Alu -8 302 139 1948 82 27 0 chr1 40799178 40799435 -201864918 - AluSq SINE Alu -39 274 11 2233 92 0 13 chr1 40799435 40799573 -201864780 - AluSg SINE Alu -171 139 1 384 259 0 0 chr1 40799573 40799654 -201864699 - MER94 DNA DNA -53 81 1 392 135 16 48 chr1 40800595 40800721 -201863632 + CT-rich Low_complexity Low_complexity 3 124 0 259 286 48 82 chr1 40801323 40801554 -201862799 - L2 LINE L2 -23 3249 3027 2443 72 0 0 chr1 40802035 40802342 -201862011 - AluY SINE Alu -4 307 1 254 240 51 13 chr1 40802991 40803094 -201861259 - MIR SINE MIR -88 120 4 1825 150 7 7 chr1 40804022 40804322 -201860031 + AluJb SINE Alu 2 301 -11 493 305 382 5 chr1 40804463 40805060 -201859293 - L3 LINE CR1 -112 1465 644 456 244 0 35 chr1 40805163 40805278 -201859075 - MIR SINE MIR -28 234 124 2302 106 0 0 chr1 40805753 40806064 -201858289 + AluSx SINE Alu 1 311 -1 456 266 71 7 chr1 40806203 40806357 -201857996 + MER69A DNA AcHobo 1 164 -13 301 310 40 10 chr1 40806362 40806462 -201857891 - MIR SINE MIR -110 152 50 1218 89 204 0 chr1 40806468 40806572 -201857781 + MER30 DNA MER1_type 1 82 -148 198 103 0 0 chr1 40806572 40806601 -201857752 + (CA)n Simple_repeat Simple_repeat 2 30 0 1218 89 204 0 chr1 40806601 40806687 -201857666 + MER30 DNA MER1_type 82 230 0 2159 87 0 32 chr1 40806736 40807045 -201857308 - AluY SINE Alu -12 299 1 2081 112 3 0 chr1 40807045 40807339 -201857014 - AluY SINE Alu -16 295 1 302 328 68 47 chr1 40807344 40807461 -201856892 + L1MC/D LINE L1 4961 5074 -1072 2142 126 3 0 chr1 40807461 40807771 -201856582 - AluSp SINE Alu -1 312 2 302 328 68 47 chr1 40807771 40807888 -201856465 + L1MC/D LINE L1 5074 5200 -946 2005 147 3 0 chr1 40807889 40808188 -201856165 + AluJb SINE Alu 11 310 -2 1264 278 70 45 chr1 40808255 40808337 -201856016 + L1MC/D LINE L1 5254 5332 -2476 2029 135 0 3 chr1 40808337 40808648 -201855705 + AluSg SINE Alu 1 310 0 1264 278 70 45 chr1 40808648 40808850 -201855503 + L1MC/D LINE L1 5332 5527 -2281 1510 192 24 10 chr1 40808850 40809141 -201855212 - AluJb SINE Alu -17 295 1 1264 278 70 45 chr1 40809141 40809209 -201855144 + L1MC/D LINE L1 5527 5592 -2216 2610 156 79 0 chr1 40809209 40809640 -201854713 + MLT1C LTR MaLR 1 465 -2 1264 278 70 45 chr1 40809640 40809842 -201854511 + L1MC/D LINE L1 5592 5824 -1984 470 295 18 13 chr1 40809829 40809843 -201854510 + L1MC4a LINE L1 5715 5727 -2081 * 2079 98 13 38 chr1 40809843 40809984 -201854369 + AluJb SINE Alu 1 144 -168 2040 137 0 0 chr1 40809984 40810283 -201854070 + AluSx SINE Alu 1 299 -13 2079 98 13 38 chr1 40810283 40810457 -201853896 + AluJb SINE Alu 144 308 -4 470 295 18 13 chr1 40810457 40810666 -201853687 + L1MC4a LINE L1 5727 5939 -1869 2307 83 20 0 chr1 40810974 40811275 -201853078 - AluSp SINE Alu -6 307 1 2274 101 13 0 chr1 40811518 40811826 -201852527 - AluSx SINE Alu 0 312 1 408 216 198 0 chr1 40812274 40812390 -201851963 + MER91C DNA MER1_type 2 140 0 346 323 22 38 chr1 40812748 40812907 -201851446 + MIR3 SINE MIR 1 157 -62 1818 128 0 76 chr1 40813027 40813355 -201850998 + AluSx SINE Alu 1 303 -9 255 300 56 22 chr1 40813387 40813477 -201850876 + MIR3 SINE MIR 71 163 -45 515 270 166 69 chr1 40813639 40813958 -201850395 - MLT1K LTR MaLR -69 519 170 1888 163 0 3 chr1 40813958 40814264 -201850089 + AluSx SINE Alu 1 305 -7 2050 110 0 55 chr1 40814280 40814606 -201849747 + AluSg SINE Alu 3 310 0 286 242 164 0 chr1 40815179 40815307 -201849046 - L2 LINE L2 -3 3269 3121 409 271 34 90 chr1 40815886 40816001 -201848352 + MIR3 SINE MIR 42 145 -63 2123 126 0 13 chr1 40816001 40816311 -201848042 + AluSx SINE Alu 1 306 -6 409 271 34 90 chr1 40816311 40816372 -201847981 + MIR3 SINE MIR 145 208 0 2098 193 59 122 chr1 40816607 40816756 -201847597 - L1MD3 LINE L1 -4 8037 7880 300 111 0 0 chr1 40816756 40816801 -201847552 + (TA)n Simple_repeat Simple_repeat 1 45 0 2098 193 59 122 chr1 40816801 40816829 -201847524 - L1MD3 LINE L1 -161 7880 7852 1662 104 25 12 chr1 40816829 40817108 -201847245 - AluSx SINE Alu 0 312 44 2098 193 59 122 chr1 40817108 40817737 -201846616 - L1MD3 LINE L1 -189 7852 7184 321 204 11 80 chr1 40817737 40817825 -201846528 - MLT1K LTR MaLR -442 125 44 2098 193 59 122 chr1 40817825 40817921 -201846432 - L1MD3 LINE L1 -857 7184 7083 1754 141 17 27 chr1 40817921 40818220 -201846133 + AluJo SINE Alu 1 296 -16 2098 193 59 122 chr1 40818220 40818463 -201845890 - L1MD3 LINE L1 -958 7083 6763 2229 69 0 53 chr1 40818642 40818962 -201845391 + AluY SINE Alu 1 303 -8 251 295 105 59 chr1 40819558 40819863 -201844490 - L2 LINE L2 -31 3241 2923 197 271 34 0 chr1 40819865 40819924 -201844429 + MIR SINE MIR 201 261 -1 187 242 93 94 chr1 40820380 40820505 -201843848 + MIR SINE MIR 14 142 -66 460 241 99 28 chr1 40820511 40820764 -201843589 + L1ME3A LINE L1 5680 5950 -214 376 306 79 39 chr1 40820801 40821030 -201843323 + L1ME3A LINE L1 5927 6164 -6 249 83 0 0 chr1 40821174 40821210 -201843143 + (CA)n Simple_repeat Simple_repeat 1 36 0 29 47 0 0 chr1 40822054 40822097 -201842256 + GC_rich Low_complexity Low_complexity 1 43 0 342 91 0 0 chr1 40822375 40822430 -201841923 + (GGGGA)n Simple_repeat Simple_repeat 4 58 0 436 317 41 0 chr1 40822875 40823020 -201841333 + MIR SINE MIR 48 198 -64 214 277 0 15 chr1 40823767 40823832 -201840521 - MIR SINE MIR -168 94 31 364 300 9 0 chr1 40825865 40825975 -201838378 - L2 LINE L2 -176 3096 2986 392 290 97 47 chr1 40826277 40826522 -201837831 + MIR SINE MIR 10 262 0 649 295 7 52 chr1 40828369 40828640 -201835713 + MIR SINE MIR 2 260 -2 1729 152 17 23 chr1 40832683 40832985 -201831368 + AluJo SINE Alu 1 300 -12 233 233 68 27 chr1 40833600 40833673 -201830680 + MIR SINE MIR 90 165 -97 267 244 116 0 chr1 40833714 40833800 -201830553 + MIR SINE MIR 35 130 -78 1678 167 3 20 chr1 40835560 40835860 -201828493 - AluJb SINE Alu -17 295 1 1244 128 135 109 chr1 40835863 40836167 -201828186 - AluJo SINE Alu 0 312 1 798 269 103 23 chr1 40836168 40836517 -201827836 + L1MC4a LINE L1 5630 6006 -1802 1647 168 28 99 chr1 40836620 40836777 -201827576 + MLT1A1 LTR MaLR 1 168 -197 969 114 0 0 chr1 40836777 40836909 -201827444 + FLAM_C SINE Alu 2 133 0 1647 168 28 99 chr1 40836909 40836924 -201827429 + MLT1A1 LTR MaLR 168 182 -183 1424 198 17 17 chr1 40836924 40837212 -201827141 + AluJb SINE Alu 1 288 -24 1647 168 28 99 chr1 40837212 40837431 -201826922 + MLT1A1 LTR MaLR 182 365 0 21 0 0 0 chr1 40837440 40837461 -201826892 + AT_rich Low_complexity Low_complexity 1 21 0 267 188 87 14 chr1 40837609 40837678 -201826675 - MER116 DNA Mariner -4 76 3 894 225 0 12 chr1 40838213 40838382 -201825971 - FAM SINE Alu -8 167 1 2035 126 0 7 chr1 40838416 40838718 -201825635 + AluSg SINE Alu 1 300 -10 1381 129 0 0 chr1 40838895 40839097 -201825256 + AluSx SINE Alu 2 203 -109 1395 152 7 45 chr1 40839099 40839368 -201824985 + AluJo SINE Alu 22 280 -32 338 56 0 19 chr1 40839368 40839422 -201824931 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 472 64 39 39 chr1 40839580 40839658 -201824695 - AluJ/FRAM SINE Alu -6 306 229 2359 65 0 0 chr1 40839706 40839999 -201824354 - AluY SINE Alu -18 293 1 189 0 0 0 chr1 40840232 40840253 -201824100 + (A)n Simple_repeat Simple_repeat 1 21 0 701 160 139 21 chr1 40840509 40840653 -201823700 + MER5B DNA MER1_type 2 162 -16 203 262 0 0 chr1 40841291 40841352 -201823001 + A-rich Low_complexity Low_complexity 7 67 0 2234 96 7 3 chr1 40841905 40842208 -201822145 + AluSq SINE Alu 1 304 -9 1738 162 0 10 chr1 40842220 40842528 -201821825 + AluJb SINE Alu 1 305 -7 2194 75 7 0 chr1 40842724 40843052 -201821301 + AluSg SINE Alu 1 330 0 1458 160 78 17 chr1 40843092 40843386 -201820967 + AluJb SINE Alu 1 312 0 25 31 0 0 chr1 40844016 40844048 -201820305 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr1 40844694 40844730 -201819623 + AT_rich Low_complexity Low_complexity 1 36 0 820 53 0 26 chr1 40844899 40845041 -201819312 - AluYa5/8 SINE Alu 0 308 170 2178 101 0 0 chr1 40845248 40845563 -201818790 - AluSq SINE Alu 0 315 1 1456 148 47 29 chr1 40846081 40846402 -201817951 - AluJo SINE Alu 0 326 1 21 36 0 0 chr1 40846511 40846539 -201817814 + AT_rich Low_complexity Low_complexity 1 28 0 1731 156 14 10 chr1 40846541 40846836 -201817517 + AluJb SINE Alu 1 296 -16 240 171 73 0 chr1 40846919 40846960 -201817393 + L2 LINE L2 3261 3304 -9 1802 123 48 0 chr1 40847696 40847989 -201816364 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr1 40848047 40848075 -201816278 + AT_rich Low_complexity Low_complexity 1 28 0 618 203 8 16 chr1 40849916 40850044 -201814309 - FLAM_A SINE Alu -4 129 3 1789 164 0 7 chr1 40850287 40850591 -201813762 - AluJb SINE Alu -10 302 1 1507 164 22 36 chr1 40850598 40850897 -201813456 - AluJo SINE Alu 0 306 12 1631 159 10 36 chr1 40851045 40851353 -201813000 + AluJo SINE Alu 6 305 -7 1619 149 28 10 chr1 40851353 40851641 -201812712 + AluSx SINE Alu 1 293 -19 2036 132 48 40 chr1 40851650 40852022 -201812331 + THE1C LTR MaLR 1 375 0 2154 115 0 3 chr1 40852160 40852465 -201811888 + AluSq SINE Alu 1 304 -9 243 0 0 0 chr1 40852472 40852499 -201811854 + (CA)n Simple_repeat Simple_repeat 2 28 0 2024 124 0 7 chr1 40852557 40852855 -201811498 - AluSx SINE Alu -16 296 1 1487 101 55 0 chr1 40853051 40853269 -201811084 - MER30 DNA MER1_type 0 230 1 1654 195 63 3 chr1 40853368 40853662 -201810691 + L1M4 LINE L1 4745 5069 -1077 2194 96 0 0 chr1 40853662 40853955 -201810398 + AluSg SINE Alu 1 293 -17 1654 195 63 3 chr1 40853955 40854039 -201810314 + L1M4 LINE L1 5069 5146 -1000 1396 163 74 18 chr1 40854043 40854210 -201810143 - AluJo SINE Alu -8 304 113 216 0 0 0 chr1 40854210 40854234 -201810119 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1396 163 74 18 chr1 40854234 40854349 -201810004 - AluJo SINE Alu -199 113 6 180 0 0 0 chr1 40854362 40854382 -201809971 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 761 124 97 0 chr1 40854382 40854495 -201809858 - FRAM SINE Alu -33 143 20 2141 121 0 0 chr1 40854709 40855015 -201809338 + AluSq SINE Alu 1 306 -7 828 179 130 6 chr1 40855356 40855518 -201808835 + AluSg/x SINE Alu 123 304 -8 1726 159 13 19 chr1 40855942 40856256 -201808097 - AluJo SINE Alu 0 312 1 1545 186 7 0 chr1 40856496 40856765 -201807588 + AluJo SINE Alu 11 281 -31 1966 128 0 10 chr1 40857423 40857746 -201806607 - AluSx SINE Alu 0 312 3 1990 116 3 20 chr1 40857749 40858052 -201806301 - AluSg SINE Alu -12 298 1 2065 120 13 0 chr1 40858053 40858353 -201806000 - AluSx SINE Alu -8 304 1 23 55 0 18 chr1 40858385 40858404 -201805949 + AT_rich Low_complexity Low_complexity 1 19 -35 2222 77 11 0 chr1 40858404 40858691 -201805662 - AluSp SINE Alu -23 290 1 23 55 0 18 chr1 40858691 40858726 -201805627 + AT_rich Low_complexity Low_complexity 19 54 0 873 230 5 20 chr1 40858771 40858967 -201805386 + L1MC4a LINE L1 6711 6903 -905 987 270 113 52 chr1 40858996 40859760 -201804593 + L1MC4 LINE L1 7095 7904 -138 596 241 72 17 chr1 40859756 40860046 -201804307 + L1MD2 LINE L1 5999 6355 -4 * 285 277 31 8 chr1 40860067 40860197 -201804156 + L1MC4 LINE L1 7904 8036 -6 293 174 14 43 chr1 40860209 40860278 -201804075 - MER113 DNA MER1_type? -421 100 34 1526 186 10 17 chr1 40860283 40860578 -201803775 + AluJo SINE Alu 5 297 -15 1343 89 6 0 chr1 40860580 40860760 -201803593 + AluSx SINE Alu 1 181 -131 212 196 71 0 chr1 40860860 40860916 -201803437 - MIR SINE MIR -73 189 130 220 260 0 40 chr1 40862037 40862137 -201802216 + C-rich Low_complexity Low_complexity 3 98 0 26 0 0 0 chr1 40862209 40862235 -201802118 + GC_rich Low_complexity Low_complexity 1 26 0 252 349 122 37 chr1 40862641 40863051 -201801302 + L2 LINE L2 2323 2767 -547 608 290 69 30 chr1 40863068 40863299 -201801054 + MIR SINE MIR 3 242 -20 383 234 157 29 chr1 40863368 40863638 -201800715 - L1MEd LINE L1 -4867 1252 1027 1074 230 47 58 chr1 40863640 40863889 -201800464 - L1M4 LINE L1 -1827 4319 4074 2291 51 7 10 chr1 40863889 40864182 -201800171 + AluY SINE Alu 1 292 -19 1074 230 47 58 chr1 40864182 40864293 -201800060 - L1M4 LINE L1 -2072 4074 3963 1914 85 37 4 chr1 40864330 40864624 -201799729 + AluSg SINE Alu 3 305 0 2161 95 3 3 chr1 40864628 40864923 -201799430 + AluSq SINE Alu 1 295 -18 3561 71 38 75 chr1 40864923 40865102 -201799251 - MER51-int LTR ERV1 -4870 2946 2762 302 26 26 0 chr1 40865102 40865140 -201799213 - U2 snRNA snRNA -149 39 1 3561 71 38 75 chr1 40865140 40865553 -201798800 - MER51-int LTR ERV1 -5054 2762 2340 477 143 83 0 chr1 40865553 40865637 -201798716 - AluSp/q SINE Alu -5 308 218 529 125 34 0 chr1 40865652 40865740 -201798613 - MSTB1-int LTR MaLR -1508 143 53 3261 129 91 142 chr1 40865740 40867231 -201797122 + pTR5 LTR ERV1 743 2606 0 298 118 0 0 chr1 40867231 40867282 -201797071 - MSTB1-int LTR MaLR -1595 56 6 1484 162 251 3 chr1 40867287 40867633 -201796720 - MSTB1 LTR MaLR 0 432 1 1750 149 0 0 chr1 40867692 40867960 -201796393 + AluSx SINE Alu 1 268 -44 1913 116 10 36 chr1 40867972 40868274 -201796079 + AluSq SINE Alu 1 294 -19 2076 77 0 4 chr1 40868277 40868550 -201795803 + AluSp SINE Alu 1 272 -41 688 100 0 0 chr1 40868551 40868641 -201795712 + AluSp/q SINE Alu 205 294 -19 337 246 63 42 chr1 40868653 40868795 -201795558 - L1MEd LINE L1 -5084 1035 891 658 193 9 0 chr1 40868884 40868993 -201795360 + FLAM_A SINE Alu 10 119 -23 332 280 75 9 chr1 40869027 40869134 -201795219 - L1MEd LINE L1 -5297 822 709 2376 76 3 6 chr1 40869194 40869508 -201794845 - AluSp SINE Alu 0 313 1 1482 175 51 35 chr1 40869561 40869876 -201794477 + MER65A LTR ERV1 1 320 -125 378 164 0 15 chr1 40869882 40869949 -201794404 + LTR19C LTR ERV1 619 684 -95 2027 113 7 0 chr1 40869951 40870243 -201794110 + AluSg SINE Alu 1 294 -16 2182 107 7 0 chr1 40870243 40870553 -201793800 + AluSx SINE Alu 1 312 0 641 191 6 32 chr1 40870553 40870710 -201793643 + MER65A LTR ERV1 293 445 0 1208 234 98 133 chr1 40870716 40871317 -201793036 + MER65A-int LTR ERV1 11 631 -4240 1997 114 7 10 chr1 40871317 40871637 -201792716 + AluSq SINE Alu 1 313 0 1540 187 13 45 chr1 40871646 40871777 -201792576 + AluJo SINE Alu 1 135 -167 1649 96 31 50 chr1 40871777 40871893 -201792460 - AluSx SINE Alu -57 255 138 2266 84 7 0 chr1 40871893 40872202 -201792151 - AluY SINE Alu 0 311 1 1649 96 31 50 chr1 40872202 40872345 -201792008 - AluSx SINE Alu -174 138 1 1540 187 13 45 chr1 40872345 40872523 -201791830 + AluJo SINE Alu 135 300 -2 1208 234 98 133 chr1 40872523 40872869 -201791484 + MER65A-int LTR ERV1 639 932 -3939 2095 97 7 7 chr1 40872869 40873036 -201791317 - AluSx SINE Alu -11 301 132 2111 110 3 0 chr1 40873036 40873335 -201791018 - AluSp SINE Alu -13 300 1 2095 97 7 7 chr1 40873335 40873466 -201790887 - AluSx SINE Alu -179 133 3 1208 234 98 133 chr1 40873466 40873540 -201790813 + MER65A-int LTR ERV1 932 1007 -3864 2154 110 0 0 chr1 40873542 40873833 -201790520 - AluSx SINE Alu -21 291 1 272 176 27 95 chr1 40873855 40873929 -201790424 + LTR49-int LTR ERV1 2404 2472 -2464 1460 189 46 0 chr1 40874053 40874333 -201790020 + AluJb SINE Alu 1 293 -19 1980 118 7 3 chr1 40874335 40874631 -201789722 + AluSx SINE Alu 1 297 -15 1948 124 0 10 chr1 40874633 40874924 -201789429 + AluSq SINE Alu 1 288 -25 35 24 0 0 chr1 40874924 40874966 -201789387 + AT_rich Low_complexity Low_complexity 1 42 0 273 132 0 113 chr1 40875002 40875065 -201789288 + FLAM SINE Alu 83 133 0 311 0 26 0 chr1 40875128 40875167 -201789186 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 868 179 0 0 chr1 40875173 40875313 -201789040 - FRAM SINE Alu -37 139 1 669 164 29 92 chr1 40875482 40875689 -201788664 + LTR49-int LTR ERV1 3567 3760 -2838 1087 191 71 63 chr1 40875747 40875955 -201788398 + LTR49-int LTR ERV1 2480 2685 -2251 1710 106 98 18 chr1 40875955 40876229 -201788124 - AluSx SINE Alu -16 296 1 1087 191 71 63 chr1 40876229 40876602 -201787751 + LTR49-int LTR ERV1 2685 2967 -1969 269 81 0 0 chr1 40876612 40876649 -201787704 - MER41B LTR ERV1 -118 517 481 1451 205 108 115 chr1 40876751 40877070 -201787283 + LTR49-int LTR ERV1 4287 4607 -1724 2227 82 3 0 chr1 40877070 40877362 -201786991 - AluSp SINE Alu -20 293 1 2202 101 0 0 chr1 40877362 40877659 -201786694 - AluSq SINE Alu -4 309 13 1451 205 108 115 chr1 40877659 40877682 -201786671 + LTR49-int LTR ERV1 4606 4628 -1703 1681 185 7 3 chr1 40877682 40877984 -201786369 - AluJb SINE Alu -9 303 1 1451 205 108 115 chr1 40877984 40878035 -201786318 + LTR49-int LTR ERV1 4628 4678 -1653 2296 91 0 7 chr1 40878035 40878343 -201786010 + AluSg SINE Alu 1 306 -4 1451 205 108 115 chr1 40878343 40878769 -201785584 + LTR49-int LTR ERV1 4678 5103 -1228 2242 91 0 0 chr1 40878833 40879153 -201785200 + AluSx SINE Alu 1 320 0 251 130 152 0 chr1 40879238 40879284 -201785069 + LTR49-int LTR ERV1 5337 5389 -942 1756 155 0 19 chr1 40879312 40879622 -201784731 - AluJb SINE Alu -8 304 1 1436 179 32 11 chr1 40879652 40879776 -201784577 + AluJo SINE Alu 7 127 -185 2352 71 0 0 chr1 40879776 40880073 -201784280 + AluY SINE Alu 1 297 -14 1436 179 32 11 chr1 40880073 40880227 -201784126 + AluJo SINE Alu 127 291 -21 1414 146 94 22 chr1 40880240 40880515 -201783838 + AluJb SINE Alu 6 300 -12 1491 152 19 4 chr1 40880531 40880795 -201783558 + AluJo SINE Alu 20 287 -25 2051 94 45 3 chr1 40880806 40881094 -201783259 + AluSg SINE Alu 1 300 -10 703 179 121 85 chr1 40881101 40881324 -201783029 + MIR SINE MIR 32 262 0 219 359 58 10 chr1 40881579 40881682 -201782671 + MIR SINE MIR 16 123 -85 907 159 0 0 chr1 40881832 40881964 -201782389 - FLAM_A SINE Alu -1 132 1 1957 104 0 68 chr1 40882761 40883087 -201781266 + AluSg SINE Alu 1 304 -6 2238 81 7 10 chr1 40883484 40883779 -201780574 - AluSx SINE Alu -14 298 5 2341 66 0 3 chr1 40885898 40886201 -201778152 + AluY SINE Alu 1 302 -9 376 265 46 80 chr1 40886363 40886440 -201777913 + MIR3 SINE MIR 1 72 -136 3617 108 21 23 chr1 40886440 40886968 -201777385 + MER1A DNA MER1_type 1 527 0 376 265 46 80 chr1 40886968 40887041 -201777312 + MIR3 SINE MIR 72 146 -62 2158 99 3 0 chr1 40887101 40887393 -201776960 + AluSg SINE Alu 1 293 -17 920 178 0 12 chr1 40887469 40887638 -201776715 + AluJb SINE Alu 130 296 -16 530 305 85 37 chr1 40888673 40889027 -201775326 + L1ME4a LINE L1 4158 4528 -1618 2314 86 3 0 chr1 40889052 40889354 -201774999 + AluSq SINE Alu 1 303 -10 3705 165 83 20 chr1 40889391 40890081 -201774272 - MER44D DNA MER2_type 0 605 1 1904 154 3 3 chr1 40890129 40890435 -201773918 + AluJb SINE Alu 1 306 -6 1542 172 79 0 chr1 40890467 40890746 -201773607 + AluJo SINE Alu 1 301 -11 821 241 141 38 chr1 40890763 40891216 -201773137 + L1ME4a LINE L1 5379 5878 -243 1895 112 13 23 chr1 40891530 40891834 -201772519 + AluSx SINE Alu 1 301 -11 2211 96 0 6 chr1 40891836 40892148 -201772205 + AluSg SINE Alu 1 310 0 186 271 0 86 chr1 40892517 40892587 -201771766 - L3 LINE CR1 -1070 507 444 189 74 0 0 chr1 40893142 40893169 -201771184 + (A)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr1 40893306 40893335 -201771018 + AT_rich Low_complexity Low_complexity 1 29 0 1772 149 18 4 chr1 40893335 40893347 -201771006 + L1M3 LINE L1 5406 5416 -755 847 106 0 63 chr1 40893347 40893489 -201770864 + FLAM_C SINE Alu 1 133 0 1772 149 18 4 chr1 40893489 40893805 -201770548 + L1M3 LINE L1 5416 5738 -433 602 226 30 8 chr1 40893925 40894058 -201770295 + L2 LINE L2 16 151 -3163 2101 148 0 0 chr1 40894063 40894374 -201769979 + AluSx SINE Alu 1 311 -1 1520 236 96 2 chr1 40894394 40894801 -201769552 + L2 LINE L2 1804 2248 -1066 516 221 117 0 chr1 40894805 40894950 -201769403 + MLT1C LTR MaLR 75 236 -231 2055 131 7 0 chr1 40895127 40895433 -201768920 + AluSx SINE Alu 5 312 0 857 157 102 76 chr1 40895469 40895536 -201768817 + MER2 DNA MER2_type 2 66 -279 2267 74 0 22 chr1 40895536 40895847 -201768506 + AluY SINE Alu 1 304 -7 857 157 102 76 chr1 40895847 40895976 -201768377 + MER2 DNA MER2_type 66 203 -142 2112 88 28 0 chr1 40895997 40896281 -201768072 - AluSx SINE Alu -20 292 1 1053 75 34 0 chr1 40896285 40896432 -201767921 + AluSg/x SINE Alu 158 309 -3 1046 124 37 26 chr1 40896470 40896667 -201767686 + THE1B LTR MaLR 171 364 0 3428 193 85 57 chr1 40896669 40897091 -201767262 + L1MD1 LINE L1 4150 4559 -1617 1713 130 27 34 chr1 40897091 40897383 -201766970 - AluJb SINE Alu -22 290 1 3428 193 85 57 chr1 40897383 40897710 -201766643 + L1MD1 LINE L1 4559 4875 -1301 316 0 22 22 chr1 40897710 40897755 -201766598 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3428 193 85 57 chr1 40897755 40898094 -201766259 + L1MD1 LINE L1 4875 5203 -973 2158 112 0 6 chr1 40898094 40898406 -201765947 + AluSq SINE Alu 1 310 -3 3428 193 85 57 chr1 40898406 40898485 -201765868 + L1MD1 LINE L1 5203 5278 -898 1893 107 0 4 chr1 40898485 40898746 -201765607 + AluSg SINE Alu 1 260 -50 303 49 0 0 chr1 40898746 40898787 -201765566 + (CA)n Simple_repeat Simple_repeat 2 42 0 3428 193 85 57 chr1 40898787 40898833 -201765520 + L1MD1 LINE L1 5277 5428 -748 948 81 0 0 chr1 40898833 40898956 -201765397 + AluSg/x SINE Alu 175 297 -15 4525 138 45 22 chr1 40898956 40899105 -201765248 + L1MD1 LINE L1 5413 5557 -685 1471 204 92 33 chr1 40899105 40899473 -201764880 + MLT1B LTR MaLR 1 390 0 4525 138 45 22 chr1 40899473 40900132 -201764221 + L1MD1 LINE L1 5557 6239 -3 221 268 222 26 chr1 40900565 40900718 -201763635 + L2 LINE L2 2245 2427 -887 711 292 147 26 chr1 40900750 40901231 -201763122 + L2 LINE L2 2776 3313 0 1998 101 20 0 chr1 40902114 40902411 -201761942 + AluSx SINE Alu 1 303 -9 233 265 29 0 chr1 40902431 40902499 -201761854 + L1MC/D LINE L1 5688 5757 -2051 725 145 178 22 chr1 40902743 40902966 -201761387 + LTR29 LTR ERV1 1 188 -434 1491 151 54 7 chr1 40902966 40903264 -201761089 + AluJo SINE Alu 1 312 0 725 145 178 22 chr1 40903264 40903376 -201760977 + LTR29 LTR ERV1 188 423 -199 * 1000 124 34 23 chr1 40903371 40903548 -201760805 + LTR49 LTR ERV1 416 594 -1 2271 60 0 0 chr1 40903584 40903866 -201760487 + AluSg SINE Alu 1 282 -28 200 313 62 36 chr1 40904327 40904439 -201759914 - MIR SINE MIR -61 147 33 329 295 151 6 chr1 40904922 40905088 -201759265 + L3 LINE CR1 1300 1489 -88 2353 274 84 8 chr1 40905588 40906388 -201757965 + L2 LINE L2 2154 3016 -297 3587 201 26 49 chr1 40907358 40908336 -201756017 - LTR5 LTR ERVK -14 955 1 180 0 0 0 chr1 40908516 40908536 -201755817 + (TCCA)n Simple_repeat Simple_repeat 3 22 0 768 219 77 0 chr1 40910561 40910730 -201753623 + MER5A DNA MER1_type 8 189 0 1969 118 0 0 chr1 40911166 40911445 -201752908 - AluSq SINE Alu -17 296 18 1951 125 4 0 chr1 40911623 40911902 -201752451 + AluSq SINE Alu 1 280 -33 2267 75 3 0 chr1 40912059 40912352 -201752001 - AluY SINE Alu -17 294 1 247 297 117 8 chr1 40914889 40915017 -201749336 - L3 LINE CR1 -43 1534 1393 205 239 114 57 chr1 40915480 40915568 -201748785 - L2 LINE L2 -330 2942 2850 714 211 0 0 chr1 40916270 40916403 -201747950 + FLAM_A SINE Alu 1 133 0 1949 159 78 50 chr1 40917390 40917432 -201746921 + MSTD LTR MaLR 3 42 -354 2384 121 28 6 chr1 40917432 40917788 -201746565 + THE1B LTR MaLR 1 364 0 1949 159 78 50 chr1 40917788 40917921 -201746432 + MSTD LTR MaLR 42 170 -226 2315 91 0 0 chr1 40917921 40918218 -201746135 + AluSg SINE Alu 1 297 -13 1949 159 78 50 chr1 40918218 40918424 -201745929 + MSTD LTR MaLR 170 396 0 225 250 17 0 chr1 40918550 40918610 -201745743 - MIR SINE MIR -30 232 172 3388 151 45 10 chr1 40918821 40919422 -201744931 + LTR26E LTR ERV1 1 622 0 805 261 119 3 chr1 40919600 40919903 -201744450 + L2 LINE L2 2849 3186 -127 2166 213 140 70 chr1 40919923 40920636 -201743717 + MER21B LTR ERV1 40 802 -61 319 339 31 0 chr1 40920646 40920773 -201743580 + L2 LINE L2 3183 3313 0 347 271 196 0 chr1 40921203 40921310 -201743043 + L2 LINE L2 3142 3269 -3 2150 101 7 3 chr1 40921567 40921863 -201742490 - AluSg SINE Alu -13 297 1 36 0 0 0 chr1 40921865 40921901 -201742452 + AT_rich Low_complexity Low_complexity 1 36 0 184 274 98 29 chr1 40922688 40922790 -201741563 + MIR SINE MIR 35 143 -119 2141 97 16 3 chr1 40924501 40924809 -201739544 + AluSx SINE Alu 1 312 0 670 278 69 98 chr1 40925064 40925816 -201738537 + HAL1 LINE L1 1 730 -1777 2052 131 0 0 chr1 40925828 40926126 -201738227 + AluSx SINE Alu 1 298 -14 290 215 52 148 chr1 40926152 40926236 -201738117 + HAL1 LINE L1 743 811 -1696 1599 193 0 7 chr1 40926236 40926531 -201737822 - AluJo SINE Alu -19 293 1 290 215 52 148 chr1 40926531 40926581 -201737772 + HAL1 LINE L1 811 864 -1643 607 88 0 78 chr1 40926596 40926698 -201737655 + AluJb SINE Alu 212 305 -7 814 235 212 68 chr1 40926721 40926937 -201737416 + HAL1 LINE L1 899 1082 -1425 2264 81 3 0 chr1 40926937 40927233 -201737120 + AluSp SINE Alu 1 297 -16 814 235 212 68 chr1 40927233 40927287 -201737066 + HAL1 LINE L1 1082 1127 -1380 2350 79 0 3 chr1 40927287 40927592 -201736761 + AluSc SINE Alu 1 304 -5 814 235 212 68 chr1 40927592 40927805 -201736548 + HAL1 LINE L1 1127 1453 -1054 964 165 0 29 chr1 40927811 40927981 -201736372 + FRAM SINE Alu 1 157 -19 1216 256 191 29 chr1 40927988 40928578 -201735775 + HAL1 LINE L1 1470 2155 -352 694 68 11 0 chr1 40928578 40928666 -201735687 + MER72 LTR ERV1 606 694 -28 388 249 107 78 chr1 40928777 40928982 -201735371 + HAL1 LINE L1 2250 2460 -47 228 219 31 47 chr1 40929032 40929096 -201735257 - L2 LINE L2 -243 3070 3008 2249 75 10 0 chr1 40929341 40929634 -201734719 - AluSg SINE Alu -14 296 1 1069 131 0 0 chr1 40929639 40929799 -201734554 - FRAM SINE Alu -19 157 1 22 0 0 0 chr1 40930682 40930704 -201733649 + AT_rich Low_complexity Low_complexity 1 22 0 270 375 25 0 chr1 40931129 40931249 -201733104 + MIR3 SINE MIR 66 188 -20 2443 134 6 70 chr1 40931748 40931843 -201732510 + L1MB3 LINE L1 5740 5839 -344 1904 136 7 13 chr1 40931843 40932152 -201732201 + AluJb SINE Alu 6 312 0 2443 134 6 70 chr1 40932152 40932472 -201731881 + L1MB3 LINE L1 5839 6178 -5 1741 91 12 8 chr1 40932472 40932714 -201731639 + AluSq SINE Alu 1 243 -70 2443 134 6 70 chr1 40932714 40932731 -201731622 + L1MB3 LINE L1 6178 6144 -39 2175 97 3 0 chr1 40932731 40933030 -201731323 - AluSx SINE Alu -12 300 1 2443 134 6 70 chr1 40933030 40933065 -201731288 + L1MB3 LINE L1 6143 6179 -4 305 294 88 34 chr1 40933557 40933819 -201730534 + L1ME4a LINE L1 5530 5805 -316 1285 146 78 0 chr1 40933862 40934081 -201730272 - AluJo SINE Alu -76 236 1 323 235 96 81 chr1 40934297 40934433 -201729920 + L1ME4a LINE L1 5981 6118 -3 1958 143 3 3 chr1 40934656 40934964 -201729389 + AluSx SINE Alu 1 308 -4 2217 79 7 10 chr1 40936972 40937276 -201727077 - AluY SINE Alu -8 303 1 429 300 121 40 chr1 40937688 40937782 -201726571 - MIR SINE MIR -15 247 162 2089 101 7 7 chr1 40937782 40938078 -201726275 - AluSp SINE Alu -17 296 1 429 300 121 40 chr1 40938078 40938206 -201726147 - MIR SINE MIR -100 162 7 672 282 40 25 chr1 40939105 40939169 -201725184 - MIR SINE MIR -2 260 198 2344 110 0 3 chr1 40939169 40939478 -201724875 - AluSx SINE Alu -4 308 1 672 282 40 25 chr1 40939478 40939615 -201724738 - MIR SINE MIR -64 198 56 731 216 39 0 chr1 40939916 40940069 -201724284 - MER58A DNA MER1_type 0 159 1 1081 251 72 14 chr1 40940130 40940493 -201723860 - L2 LINE L2 0 3313 2930 1161 320 60 4 chr1 40991742 40992223 -201672130 + MLT1K LTR MaLR 81 588 0 1227 173 15 38 chr1 40992550 40992816 -201671537 - Tigger1 DNA MER2_type 0 2418 2159 201 94 0 0 chr1 40992967 40992999 -201671354 + (TG)n Simple_repeat Simple_repeat 1 32 0 910 220 92 51 chr1 40994170 40994484 -201669869 + MLT1D LTR MaLR 2 328 -177 416 335 51 4 chr1 40994832 40995089 -201669264 + MER113 DNA MER1_type? 161 429 -92 2323 104 0 0 chr1 40995410 40995708 -201668645 + AluSx SINE Alu 1 298 -14 1432 258 52 8 chr1 40995711 40996191 -201668162 - Charlie4a DNA MER1_type -6 502 2 243 240 149 7 chr1 40996400 40996554 -201667799 + L1ME LINE L1 5599 5774 -347 1194 119 12 0 chr1 40996692 40996852 -201667501 + AluSg/x SINE Alu 131 292 -20 2190 117 7 0 chr1 40996852 40997143 -201667210 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr1 40997157 40997185 -201667168 + GC_rich Low_complexity Low_complexity 1 28 0 2822 84 38 90 chr1 40997236 40997736 -201666617 + SVA Other Other 393 866 -520 577 97 8 37 chr1 40997754 40997888 -201666465 + SVA Other Other 665 794 -592 25 51 0 0 chr1 40998004 40998043 -201666310 + AT_rich Low_complexity Low_complexity 1 39 0 1711 199 0 10 chr1 40998043 40998335 -201666018 - AluJo SINE Alu -23 289 1 1875 172 0 34 chr1 40998368 40998688 -201665665 - AluJb SINE Alu -3 309 1 6942 61 8 51 chr1 40998725 40999723 -201664630 - SVA Other Other 0 1386 432 361 349 93 26 chr1 41000058 41000327 -201664026 - L2 LINE L2 0 3272 2986 300 70 0 0 chr1 41000412 41000455 -201663898 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 253 254 0 0 chr1 41000548 41000603 -201663750 + L2 LINE L2 3257 3311 -2 693 289 10 10 chr1 41000771 41000968 -201663385 - MIR SINE MIR 0 262 66 237 234 75 43 chr1 41001019 41001113 -201663240 - MIR SINE MIR -74 188 92 195 42 0 0 chr1 41002120 41002144 -201662209 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 306 293 103 72 chr1 41002144 41002320 -201662033 - L2 LINE L2 0 3272 3103 1026 162 66 0 chr1 41002320 41002517 -201661836 - MER6B DNA MER2_type 0 210 1 306 293 103 72 chr1 41002517 41002688 -201661665 - L2 LINE L2 -169 3103 2914 514 160 0 17 chr1 41003875 41003994 -201660359 + CT-rich Low_complexity Low_complexity 2 118 0 693 177 0 17 chr1 41004015 41004190 -201660163 + CT-rich Low_complexity Low_complexity 3 174 0 346 273 172 15 chr1 41004455 41004653 -201659700 + L2 LINE L2 2434 2662 -652 208 315 63 0 chr1 41004658 41004785 -201659568 + L2 LINE L2 2804 2938 -376 287 173 0 0 chr1 41004807 41004859 -201659494 - Charlie1 DNA MER1_type 0 2761 2710 1400 123 0 107 chr1 41004863 41005106 -201659247 + AluJb SINE Alu 1 217 -95 1818 171 11 0 chr1 41005131 41005417 -201658936 + AluJo SINE Alu 1 289 -23 337 168 40 59 chr1 41005419 41005520 -201658833 - Charlie1 DNA MER1_type -41 2720 2622 660 200 0 15 chr1 41005531 41005666 -201658687 + FLAM_A SINE Alu 1 133 0 699 231 81 0 chr1 41005670 41005843 -201658510 - Charlie1 DNA MER1_type -2535 226 40 579 257 92 81 chr1 41005871 41006032 -201658321 + L2 LINE L2 2975 3133 -180 1633 177 3 44 chr1 41006032 41006326 -201658027 - AluJb SINE Alu -30 282 1 579 257 92 81 chr1 41006326 41006499 -201657854 + L2 LINE L2 3133 3313 0 534 182 15 116 chr1 41006509 41006707 -201657646 + MER5B DNA MER1_type 1 178 0 386 333 61 0 chr1 41007300 41007432 -201656921 - MIR SINE MIR -36 226 87 361 257 125 53 chr1 41007424 41007576 -201656777 + MIR SINE MIR 33 195 -67 * 185 0 40 0 chr1 41007702 41007727 -201656626 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2085 126 0 18 chr1 41007728 41008014 -201656339 - AluJo SINE Alu -31 281 1 317 298 83 17 chr1 41008018 41008221 -201656132 - MIR SINE MIR -46 216 12 311 336 30 8 chr1 41008684 41008815 -201655538 - MIR SINE MIR -1 261 128 21 0 0 0 chr1 41009131 41009152 -201655201 + AT_rich Low_complexity Low_complexity 1 21 0 382 212 0 0 chr1 41009152 41009218 -201655135 + AluJb SINE Alu 1 66 -236 716 164 0 0 chr1 41009242 41009358 -201654995 - FLAM_C SINE Alu -17 116 1 446 88 11 99 chr1 41009365 41009456 -201654897 + AluJb SINE Alu 54 136 -176 534 171 226 7 chr1 41010004 41010150 -201654203 - MER45A DNA AcHobo 0 178 1 317 210 37 12 chr1 41011767 41011848 -201652505 + MER5A DNA MER1_type 50 132 -57 355 328 85 10 chr1 41012277 41012478 -201651875 + MIR SINE MIR 33 248 -14 474 215 118 21 chr1 41012540 41012684 -201651669 - MIR SINE MIR -70 192 35 559 211 101 25 chr1 41013321 41013520 -201650833 + L1MC4a LINE L1 5724 5937 -1871 1471 213 118 55 chr1 41013531 41013843 -201650510 - MLT1F LTR MaLR 0 542 251 180 0 0 0 chr1 41013843 41013863 -201650490 + (GA)n Simple_repeat Simple_repeat 2 21 0 1471 213 118 55 chr1 41013863 41013955 -201650398 - MLT1F LTR MaLR -291 251 166 2498 70 0 7 chr1 41013955 41014256 -201650097 + AluSc SINE Alu 1 299 -10 1471 213 118 55 chr1 41014256 41014357 -201649996 - MLT1F LTR MaLR -376 166 4 723 188 129 0 chr1 41014444 41014614 -201649739 - AluJo SINE Alu -119 193 2 2156 124 7 0 chr1 41014674 41014965 -201649388 + AluSx SINE Alu 1 293 -19 191 250 0 0 chr1 41015347 41015387 -201648966 + L2 LINE L2 3217 3256 -16 * 261 328 99 26 chr1 41015368 41015560 -201648793 + L2 LINE L2 2890 3095 -177 388 157 157 0 chr1 41015623 41015706 -201648647 + MER5A DNA MER1_type 11 106 -83 599 195 65 0 chr1 41016206 41016329 -201648024 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr1 41016876 41016897 -201647456 + AT_rich Low_complexity Low_complexity 1 21 0 2161 106 58 0 chr1 41018616 41018908 -201645445 + AluSq SINE Alu 1 309 -4 660 191 8 8 chr1 41019139 41019270 -201645083 + FLAM_C SINE Alu 1 131 -2 382 245 26 53 chr1 41019293 41019444 -201644909 + L2 LINE L2 2622 2768 -546 833 168 0 39 chr1 41019481 41019636 -201644717 - AluJb SINE Alu -27 285 137 2100 131 0 26 chr1 41019642 41019948 -201644405 - AluJb SINE Alu -12 300 3 1052 275 64 12 chr1 41019950 41020390 -201643963 + L2 LINE L2 2776 3311 -2 888 221 9 44 chr1 41020765 41020991 -201643362 - MER20 DNA MER1_type -1 218 1 1823 110 59 7 chr1 41021050 41021322 -201643031 + AluSx SINE Alu 1 286 -26 342 45 0 0 chr1 41021322 41021366 -201642987 + (TG)n Simple_repeat Simple_repeat 2 45 0 2374 95 0 0 chr1 41021539 41021834 -201642519 + AluSx SINE Alu 1 295 -17 1111 197 176 7 chr1 41021881 41022176 -201642177 - MER7A DNA MER2_type -3 343 1 324 274 15 67 chr1 41022192 41022327 -201642026 + L1ME4a LINE L1 5920 6047 -74 488 198 30 0 chr1 41022349 41022450 -201641903 + U13 snRNA snRNA 1 104 0 1328 166 132 4 chr1 41022728 41022993 -201641360 - AluJo SINE Alu -3 299 1 2393 94 7 0 chr1 41023071 41023410 -201640943 + AluY SINE Alu 1 341 0 2176 122 3 0 chr1 41023448 41023736 -201640617 + AluSx SINE Alu 11 299 -13 2319 95 0 10 chr1 41023740 41024036 -201640317 + AluSc SINE Alu 1 293 -16 305 309 6 62 chr1 41024209 41024371 -201639982 + HAL1b LINE L1 536 688 -660 22 0 0 0 chr1 41025067 41025089 -201639264 + GC_rich Low_complexity Low_complexity 1 22 0 249 272 64 16 chr1 41025767 41025892 -201638461 + G-rich Low_complexity Low_complexity 2 132 0 963 76 0 0 chr1 41026713 41026831 -201637522 + AluJb SINE Alu 1 118 -194 342 182 119 113 chr1 41026847 41026913 -201637440 - MIR SINE MIR -57 205 141 2067 144 20 7 chr1 41026913 41027219 -201637134 - AluSx SINE Alu -2 310 1 342 182 119 113 chr1 41027219 41027311 -201637042 - MIR SINE MIR -121 141 46 192 158 0 0 chr1 41027427 41027465 -201636888 + (CA)n Simple_repeat Simple_repeat 2 39 0 438 276 167 14 chr1 41027638 41027859 -201636494 + MIR SINE MIR 8 262 0 187 274 16 16 chr1 41028266 41028328 -201636025 + MIR3 SINE MIR 14 75 -133 240 320 84 87 chr1 41028649 41028937 -201635416 - L3 LINE CR1 -31 1546 1258 1872 147 13 16 chr1 41028937 41029243 -201635110 - AluJo SINE Alu -7 305 1 240 320 84 87 chr1 41029243 41029323 -201635030 - L3 LINE CR1 -319 1258 1179 192 77 0 0 chr1 41029778 41029804 -201634549 + (TC)n Simple_repeat Simple_repeat 1 26 0 316 220 154 0 chr1 41029841 41029932 -201634421 - L2 LINE L2 0 3313 3209 228 364 21 29 chr1 41029942 41030181 -201634172 + L2 LINE L2 1380 1616 -1698 659 242 25 12 chr1 41030186 41030347 -201634006 + MER97c DNA MER1_type? 17 179 -911 767 341 190 15 chr1 41030397 41031523 -201632830 + L2 LINE L2 1649 2971 -343 214 377 44 9 chr1 41031650 41031764 -201632589 - L2 LINE L2 -5 3267 3150 744 219 0 7 chr1 41031773 41031928 -201632425 + FAM SINE Alu 21 174 -11 283 302 47 0 chr1 41032302 41032388 -201631965 + L2 LINE L2 3141 3230 -42 271 265 117 66 chr1 41032582 41032778 -201631575 - L3 LINE CR1 -19 1558 1353 395 251 79 2 chr1 41032786 41032907 -201631446 + MIR SINE MIR 27 153 -66 2306 105 0 13 chr1 41032918 41033223 -201631130 + AluSx SINE Alu 1 301 -11 583 313 15 10 chr1 41034308 41034503 -201629850 - MIR3 SINE MIR -9 199 4 2239 177 40 24 chr1 41035178 41035675 -201628678 - MLT1D LTR MaLR 0 505 1 414 0 0 0 chr1 41037785 41037831 -201626522 + (CA)n Simple_repeat Simple_repeat 1 46 0 2259 119 3 0 chr1 41040516 41040811 -201623542 - AluSx SINE Alu -16 296 1 332 287 90 8 chr1 41040908 41041030 -201623323 + MIR SINE MIR 102 233 -29 2091 130 13 3 chr1 41041129 41041428 -201622925 + AluSq SINE Alu 3 304 -9 235 300 0 0 chr1 41041448 41041528 -201622825 + GA-rich Low_complexity Low_complexity 2 81 0 213 39 0 0 chr1 41042077 41042103 -201622250 + (TC)n Simple_repeat Simple_repeat 2 27 0 441 156 0 0 chr1 41042106 41042183 -201622170 + (CA)n Simple_repeat Simple_repeat 2 78 0 1633 155 47 22 chr1 41042199 41042477 -201621876 - AluJo SINE Alu -27 285 1 264 342 11 54 chr1 41042721 41042905 -201621448 + MLT1L LTR MaLR 1 176 -439 251 295 78 23 chr1 41042946 41043075 -201621278 + MLT1L LTR MaLR 258 393 -222 256 281 62 0 chr1 41043093 41043189 -201621164 - MLT1K LTR MaLR -6 582 481 1302 278 96 63 chr1 41043261 41043426 -201620927 + L1MEc LINE L1 1011 1169 -5227 7259 29 0 4 chr1 41043426 41044508 -201619845 + L1PA4 LINE L1 5071 6148 -7 1302 278 96 63 chr1 41044508 41044719 -201619634 + L1MEc LINE L1 1169 1372 -5024 2022 129 24 3 chr1 41044719 41045006 -201619347 - AluSx SINE Alu -19 293 1 1302 278 96 63 chr1 41045006 41045134 -201619219 + L1MEc LINE L1 1372 1494 -4902 2296 112 0 0 chr1 41045134 41045428 -201618925 + AluSx SINE Alu 5 298 -14 300 53 0 0 chr1 41045428 41045466 -201618887 + (CA)n Simple_repeat Simple_repeat 2 39 0 1707 173 14 14 chr1 41045476 41045760 -201618593 + AluJo SINE Alu 1 284 -28 1302 278 96 63 chr1 41045760 41045780 -201618573 + L1MEc LINE L1 1502 1520 -4876 1909 167 3 10 chr1 41045780 41046085 -201618268 + AluJb SINE Alu 1 303 -9 1302 278 96 63 chr1 41046085 41046793 -201617560 + L1MEc LINE L1 1520 2299 -4097 1882 148 7 7 chr1 41046793 41047111 -201617242 + AluJb SINE Alu 1 318 0 1763 80 4 22 chr1 41047601 41047827 -201616526 - AluSp SINE Alu -91 222 1 34 24 0 0 chr1 41047827 41047868 -201616485 + AT_rich Low_complexity Low_complexity 1 41 0 1451 181 85 3 chr1 41047868 41048150 -201616203 + AluJo SINE Alu 4 308 -4 1080 171 4 70 chr1 41048189 41048417 -201615936 - AluJo SINE Alu -99 213 1 1977 128 35 3 chr1 41048454 41048743 -201615610 - AluSx SINE Alu -14 298 1 256 287 165 37 chr1 41048863 41049027 -201615326 + L2 LINE L2 3129 3313 0 1545 147 0 0 chr1 41049164 41049382 -201614971 + AluJb SINE Alu 86 303 -9 477 301 101 18 chr1 41049464 41049683 -201614670 + MIR SINE MIR 1 237 -25 2020 48 126 7 chr1 41050411 41050680 -201613673 - AluSg SINE Alu -9 301 1 289 271 93 0 chr1 41053497 41053604 -201610749 + L2 LINE L2 3011 3127 -186 609 199 48 68 chr1 41053631 41053786 -201610567 - MER58 DNA MER1_type -55 2365 2208 2112 114 0 32 chr1 41053786 41054094 -201610259 - AluSx SINE Alu -14 298 1 609 199 48 68 chr1 41054094 41054144 -201610209 - MER58 DNA MER1_type -212 2208 85 2471 65 0 7 chr1 41054251 41054545 -201609808 + AluSp SINE Alu 1 292 -21 397 325 61 15 chr1 41054773 41054970 -201609383 - L2 LINE L2 -3 3310 3105 604 268 105 26 chr1 41054984 41055212 -201609141 - MIR SINE MIR -16 246 1 943 135 104 154 chr1 41055466 41055784 -201608569 + AluJo SINE Alu 1 302 0 1146 161 65 5 chr1 41055790 41055989 -201608364 + AluJb SINE Alu 86 296 -16 24 32 0 0 chr1 41055989 41056020 -201608333 + AT_rich Low_complexity Low_complexity 1 31 0 230 309 79 22 chr1 41056031 41056170 -201608183 - L2 LINE L2 -239 3033 2887 885 222 35 5 chr1 41056812 41057015 -201607338 - MER3 DNA MER1_type 0 209 1 2746 164 74 4 chr1 41057578 41058103 -201606250 - MER68 LTR ERV1 0 562 1 391 294 48 20 chr1 41058159 41058305 -201606048 - MER117 DNA MER1_type -1 196 47 634 309 88 9 chr1 41058536 41058856 -201605497 + L1ME3 LINE L1 5486 5830 -332 564 213 58 13 chr1 41059687 41059842 -201604511 + MER113 DNA MER1_type? 286 447 -74 919 129 0 0 chr1 41059845 41059977 -201604376 + FLAM_C SINE Alu 1 132 -1 360 64 0 0 chr1 41059978 41060025 -201604328 + (GGAAA)n Simple_repeat Simple_repeat 4 50 0 2504 64 0 3 chr1 41060033 41060329 -201604024 + AluY SINE Alu 1 295 -16 219 293 0 0 chr1 41062331 41062389 -201601964 - MIR3 SINE MIR -1 207 150 1988 100 8 0 chr1 41062433 41062693 -201601660 - AluSp SINE Alu -10 303 42 2477 94 0 0 chr1 41063065 41063363 -201600990 + AluSx SINE Alu 1 298 -14 564 338 48 5 chr1 41063365 41063572 -201600781 + MIR SINE MIR 27 242 -20 2295 120 0 0 chr1 41063829 41064128 -201600225 + AluSx SINE Alu 1 299 -13 1661 162 67 17 chr1 41064333 41064630 -201599723 - AluJb SINE Alu 0 312 1 247 259 0 0 chr1 41064656 41064710 -201599643 + L1ME LINE L1 5518 5571 -550 2531 100 0 0 chr1 41065032 41065343 -201599010 - AluSx SINE Alu -1 311 1 2408 80 0 19 chr1 41066189 41066500 -201597853 - AluSc SINE Alu 0 309 5 2419 103 0 0 chr1 41066503 41066803 -201597550 - AluSx SINE Alu -12 300 1 832 210 0 6 chr1 41068069 41068231 -201596122 + FRAM SINE Alu 1 161 -5 222 37 0 0 chr1 41069361 41069388 -201594965 + (TCC)n Simple_repeat Simple_repeat 3 29 0 180 0 0 0 chr1 41070906 41070926 -201593427 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 2171 97 29 0 chr1 41070926 41071205 -201593148 - AluSq SINE Alu -26 287 1 304 230 101 29 chr1 41071419 41071630 -201592723 + MER102b DNA MER1_type 77 331 -10 2052 148 16 3 chr1 41072736 41073041 -201591312 + AluSx SINE Alu 1 309 -3 303 71 0 0 chr1 41073854 41073896 -201590457 + (TAA)n Simple_repeat Simple_repeat 1 42 0 510 183 159 8 chr1 41074314 41074440 -201589913 + MER104 DNA Tc2 36 180 0 1395 181 28 113 chr1 41074933 41075359 -201588994 + MLT1B LTR MaLR 1 390 0 2060 134 34 0 chr1 41075427 41075725 -201588628 - AluSx SINE Alu -4 308 1 509 312 46 8 chr1 41075833 41076096 -201588257 + L2 LINE L2 2153 2425 -889 206 289 12 0 chr1 41077035 41077118 -201587235 + L2 LINE L2 2887 2970 -302 214 143 41 20 chr1 41077830 41077879 -201586474 + MIR3 SINE MIR 109 158 -50 474 114 0 0 chr1 41080064 41080143 -201584210 + (CA)n Simple_repeat Simple_repeat 1 79 0 2456 78 0 28 chr1 41081533 41081853 -201582500 + AluY SINE Alu 1 311 0 1570 124 0 0 chr1 41082326 41082536 -201581817 + AluSg/x SINE Alu 83 292 -20 189 310 60 35 chr1 41082538 41082654 -201581699 + MIR SINE MIR 29 147 -115 361 295 18 10 chr1 41082977 41083125 -201581228 - MIR SINE MIR -63 145 31 267 278 273 35 chr1 41084353 41085004 -201579349 - L2 LINE L2 -506 2808 2003 204 285 203 8 chr1 41085158 41085281 -201579072 + MIR SINE MIR 17 163 -99 219 320 97 29 chr1 41085324 41085499 -201578854 - L2 LINE L2 -1685 1629 1443 2194 135 0 6 chr1 41085618 41085929 -201578424 + AluSx SINE Alu 1 309 -3 196 333 49 0 chr1 41085948 41086071 -201578282 - L2 LINE L2 -2521 793 665 633 280 43 70 chr1 41087981 41088238 -201576115 - MIR SINE MIR 0 262 13 210 163 0 23 chr1 41088277 41088320 -201576033 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 185 266 6 96 chr1 41088562 41088739 -201575614 - L2 LINE L2 -414 2900 2740 1100 278 137 21 chr1 41089315 41089797 -201574556 + MLT1F LTR MaLR 5 542 0 828 136 0 50 chr1 41089835 41089975 -201574378 + FLAM_C SINE Alu 1 133 0 1833 163 28 0 chr1 41089994 41090283 -201574070 + AluJb SINE Alu 1 297 -15 321 235 0 0 chr1 41091024 41091092 -201573261 - L1MB8 LINE L1 0 6178 6111 2347 102 0 0 chr1 41091092 41091387 -201572966 - AluSx SINE Alu -17 295 1 232 251 53 6 chr1 41092462 41092537 -201571816 - MIR SINE MIR -64 144 84 245 304 130 0 chr1 41092542 41092657 -201571696 - MIR SINE MIR -6 256 127 227 206 73 73 chr1 41092872 41092940 -201571413 + MLT1K LTR MaLR 182 249 -339 2361 102 0 10 chr1 41093273 41093586 -201570767 - AluSx SINE Alu 0 312 3 1943 128 12 38 chr1 41093595 41093914 -201570439 - AluJb SINE Alu -1 311 1 441 284 111 88 chr1 41094036 41094458 -201569895 + L2 LINE L2 2066 2497 -817 911 192 77 51 chr1 41094472 41094647 -201569706 - MER63D DNA MER1_type -518 543 374 2115 130 0 0 chr1 41094647 41094957 -201569396 + AluSq SINE Alu 1 310 0 911 192 77 51 chr1 41094957 41095248 -201569105 - MER63D DNA MER1_type -687 374 3 306 192 13 51 chr1 41095308 41095386 -201568967 + MER69 DNA AcHobo 2450 2524 -2 2795 172 10 135 chr1 41096207 41096523 -201567830 + L1MB2 LINE L1 3952 4306 -1840 621 132 0 0 chr1 41096523 41096614 -201567739 + AluY SINE Alu 2 92 -226 2795 172 10 135 chr1 41096614 41096633 -201567720 + L1MB2 LINE L1 4306 4326 -1820 1827 122 11 8 chr1 41096633 41096895 -201567458 + AluSq SINE Alu 44 306 -7 * 1852 79 0 4 chr1 41096893 41097120 -201567233 + AluSc SINE Alu 71 296 -13 2795 172 10 135 chr1 41096895 41097562 -201566791 + L1MB2 LINE L1 4326 4711 -1435 816 160 0 8 chr1 41097562 41097687 -201566666 + FLAM_C SINE Alu 1 124 -19 2608 211 29 3 chr1 41097729 41098320 -201566033 + L1MB2 LINE L1 4705 5310 -836 234 0 0 0 chr1 41098327 41098353 -201566000 + (T)n Simple_repeat Simple_repeat 1 26 0 665 85 21 0 chr1 41098353 41098447 -201565906 - HY3 scRNA scRNA -4 97 2 4575 166 16 4 chr1 41098448 41098479 -201565874 + L1PA6 LINE L1 5336 5365 -789 2202 123 3 0 chr1 41098479 41098780 -201565573 + AluSx SINE Alu 1 302 -10 4575 166 16 4 chr1 41098780 41099555 -201564798 + L1PA6 LINE L1 5365 6152 -2 1133 152 33 0 chr1 41099575 41099786 -201564567 + L1MB2 LINE L1 5769 5986 -182 2018 158 0 7 chr1 41099807 41100105 -201564248 + AluSx SINE Alu 10 305 -7 602 163 68 109 chr1 41100105 41100218 -201564135 + L1MB2 LINE L1 5960 6061 -110 1571 159 69 7 chr1 41100218 41100495 -201563858 + AluJo SINE Alu 15 308 -4 602 163 68 109 chr1 41100495 41100602 -201563751 + L1MB2 LINE L1 6061 6171 0 464 188 16 109 chr1 41100606 41100673 -201563680 + MER5B DNA MER1_type 61 112 -66 2403 72 0 0 chr1 41100673 41100998 -201563355 - AluY SINE Alu 0 311 1 464 188 16 109 chr1 41100998 41101058 -201563295 + MER5B DNA MER1_type 112 176 -2 404 324 123 10 chr1 41101154 41101447 -201562906 - L2 LINE L2 -998 2316 1991 442 282 47 41 chr1 41101452 41101622 -201562731 + MIR SINE MIR 59 229 -33 1216 236 124 43 chr1 41102708 41103097 -201561256 + MLT1L LTR MaLR 132 564 -51 1596 171 7 41 chr1 41103097 41103423 -201560930 + AluJo SINE Alu 1 316 0 1216 236 124 43 chr1 41103423 41103476 -201560877 + MLT1L LTR MaLR 564 611 -4 1389 158 39 15 chr1 41104016 41104276 -201560077 + Tigger5 DNA MER2_type 2058 2323 0 596 163 74 0 chr1 41104490 41104625 -201559728 + L1MB7 LINE L1 5023 5167 -979 1823 107 79 36 chr1 41104625 41104905 -201559448 + AluSg SINE Alu 1 292 -18 1162 162 0 0 chr1 41104905 41105078 -201559275 + AluSg/x SINE Alu 133 305 -5 370 227 11 0 chr1 41105079 41105167 -201559186 + L1MB7 LINE L1 5163 5251 -895 1301 198 141 49 chr1 41105171 41105596 -201558757 + MLT1C LTR MaLR 4 467 0 1265 179 30 0 chr1 41105661 41105896 -201558457 + L1MB7 LINE L1 5379 5620 -564 2071 144 7 3 chr1 41105960 41106266 -201558087 + AluSx SINE Alu 1 307 -5 1123 193 50 98 chr1 41106293 41106481 -201557872 - MLT1B LTR MaLR -46 344 179 2375 101 13 0 chr1 41106481 41106788 -201557565 - AluSp SINE Alu 0 313 3 1123 193 50 98 chr1 41106788 41106957 -201557396 - MLT1B LTR MaLR -211 179 4 2815 152 32 42 chr1 41106957 41107522 -201556831 + L1MB7 LINE L1 5613 6171 -13 1918 149 10 17 chr1 41107662 41107964 -201556389 + AluSx SINE Alu 1 300 -12 1151 163 0 0 chr1 41107998 41108182 -201556171 + AluSg/x SINE Alu 120 303 -9 2007 134 14 0 chr1 41108472 41108775 -201555578 + AluSx SINE Alu 3 309 0 620 278 90 28 chr1 41108860 41109216 -201555137 + L1M4 LINE L1 3589 3966 -2180 219 232 0 36 chr1 41109222 41109278 -201555075 + MIR SINE MIR 5 58 -204 2453 90 3 3 chr1 41109304 41109616 -201554737 - AluSx SINE Alu 0 312 1 1156 209 0 14 chr1 41109658 41109869 -201554484 - AluJo SINE Alu -104 208 1 1837 178 0 34 chr1 41109902 41110222 -201554131 - AluJb SINE Alu -3 309 1 2239 113 23 0 chr1 41110273 41110574 -201553779 + AluSp SINE Alu 1 308 -5 2171 123 7 0 chr1 41110710 41111003 -201553350 - AluSx SINE Alu -17 295 1 1297 109 11 6 chr1 41111003 41111178 -201553175 - AluSg/x SINE Alu -21 291 116 4883 175 40 7 chr1 41111781 41112616 -201551737 - MER21B LTR ERV1 -1 862 1 2645 56 0 7 chr1 41114166 41114471 -201549882 - AluY SINE Alu -8 303 1 363 246 96 24 chr1 41114725 41114892 -201549461 - HAL1 LINE L1 0 2507 2329 371 224 26 0 chr1 41115138 41115214 -201549139 + MIR SINE MIR 107 184 -78 204 356 20 41 chr1 41115324 41115388 -201548965 - L2 LINE L2 -258 3014 2950 800 196 0 0 chr1 41115388 41115521 -201548832 + FLAM_C SINE Alu 1 133 0 204 356 20 41 chr1 41115521 41115602 -201548751 - L2 LINE L2 -322 2950 2872 234 62 0 0 chr1 41116512 41116544 -201547809 + (CAGG)n Simple_repeat Simple_repeat 3 34 0 33 0 0 0 chr1 41117406 41117439 -201546914 + AT_rich Low_complexity Low_complexity 1 33 0 1451 165 0 5 chr1 41117462 41117680 -201546673 - AluJo SINE Alu -93 219 3 222 265 59 0 chr1 41117922 41117990 -201546363 + MIR3 SINE MIR 136 207 -1 2311 105 3 0 chr1 41118110 41118405 -201545948 + AluSg SINE Alu 1 296 -14 1131 212 118 4 chr1 41118412 41118667 -201545686 + AluJo SINE Alu 2 285 -17 291 109 0 36 chr1 41118711 41118766 -201545587 - FLAM_A SINE Alu 0 133 81 641 285 81 20 chr1 41118887 41119133 -201545220 + L2 LINE L2 2904 3164 -149 2257 111 3 3 chr1 41119235 41119533 -201544820 + AluSx SINE Alu 1 298 -14 2399 88 0 13 chr1 41119539 41119844 -201544509 + AluSx SINE Alu 1 301 -11 1800 121 12 0 chr1 41119874 41120122 -201544231 - AluSx SINE Alu -61 251 1 637 257 158 30 chr1 41120129 41120394 -201543959 - HAL1 LINE L1 -577 1930 1632 1342 175 9 0 chr1 41120395 41120612 -201543741 + AluJb SINE Alu 78 296 -16 24 0 0 51 chr1 41120627 41120644 -201543709 + AT_rich Low_complexity Low_complexity 1 17 -20 2409 88 3 0 chr1 41120644 41120950 -201543403 - AluY SINE Alu -4 307 1 24 0 0 51 chr1 41120950 41120971 -201543382 + AT_rich Low_complexity Low_complexity 17 37 0 727 217 194 7 chr1 41121000 41121309 -201543044 - HAL1 LINE L1 -881 1626 1260 363 174 24 114 chr1 41121330 41121497 -201542856 - HAL1 LINE L1 -1351 1156 1005 970 188 18 0 chr1 41121561 41121726 -201542627 - AluJb SINE Alu -10 302 135 453 261 34 40 chr1 41121765 41121941 -201542412 - HAL1 LINE L1 -1595 912 738 2318 116 0 0 chr1 41122085 41122386 -201541967 + AluSx SINE Alu 1 301 -11 1078 147 0 0 chr1 41122388 41122544 -201541809 + AluSg/x SINE Alu 133 288 -22 700 163 73 24 chr1 41122561 41122684 -201541669 - FLAM_A SINE Alu -4 129 1 338 315 71 25 chr1 41122702 41122899 -201541454 - HAL1 LINE L1 -1884 623 418 546 284 58 13 chr1 41123037 41123262 -201541091 + MLT1L LTR MaLR 177 411 -204 485 209 150 85 chr1 41123396 41123447 -201540906 + MER5A DNA MER1_type 26 72 -117 1878 185 0 6 chr1 41123447 41123761 -201540592 + AluJb SINE Alu 1 312 0 485 209 150 85 chr1 41123761 41123862 -201540491 + MER5A DNA MER1_type 72 188 -1 1780 202 62 133 chr1 41123996 41124153 -201540200 + MLT1E2 LTR MaLR 6 173 -453 1093 191 129 73 chr1 41124153 41124425 -201539928 - AluJo SINE Alu -15 287 1 1780 202 62 133 chr1 41124425 41124934 -201539419 + MLT1E2 LTR MaLR 173 626 0 454 339 94 18 chr1 41125023 41125362 -201538991 + LTR16C LTR ERVL 100 464 -27 1909 147 3 11 chr1 41125544 41125859 -201538494 - AluJb SINE Alu 0 314 2 2182 113 7 7 chr1 41126293 41126628 -201537725 - AluSx SINE Alu 0 335 1 250 320 33 25 chr1 41126713 41126835 -201537518 + MLT1L LTR MaLR 146 268 -347 269 359 58 15 chr1 41126881 41127087 -201537266 + MLT1L LTR MaLR 362 576 -39 258 269 154 54 chr1 41127221 41127351 -201537002 - L2 LINE L2 0 3313 3171 311 235 71 0 chr1 41127574 41127659 -201536694 - MIR SINE MIR -11 251 161 871 258 54 0 chr1 41127691 41127912 -201536441 + MLT1E2 LTR MaLR 290 522 -104 221 57 29 0 chr1 41128255 41128290 -201536063 + (CCCCCG)n Simple_repeat Simple_repeat 5 40 0 22 0 0 0 chr1 41128601 41128623 -201535730 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 41128679 41128701 -201535652 + GC_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr1 41128876 41128901 -201535452 + (CCG)n Simple_repeat Simple_repeat 2 26 0 324 224 120 8 chr1 41130881 41131006 -201533347 - MER117 DNA MER1_type -58 139 1 280 313 62 0 chr1 41131436 41131532 -201532821 + MIR SINE MIR 11 112 -150 2353 66 0 0 chr1 41131636 41131907 -201532446 + AluSx SINE Alu 24 294 -18 1988 89 23 0 chr1 41131919 41132176 -201532177 + AluSq SINE Alu 1 263 -50 874 92 0 0 chr1 41132283 41132392 -201531961 - AluSq SINE Alu -84 229 121 761 210 0 0 chr1 41132398 41132522 -201531831 + FRAM SINE Alu 1 121 -55 855 126 0 0 chr1 41132522 41132633 -201531720 - AluSq SINE Alu -201 111 1 1536 168 18 29 chr1 41132633 41132913 -201531440 + AluJo SINE Alu 29 305 -7 499 321 130 57 chr1 41132918 41133189 -201531164 - L2 LINE L2 -22 3291 3041 1899 168 19 10 chr1 41133189 41133498 -201530855 + AluJo SINE Alu 1 312 0 2074 127 3 40 chr1 41133500 41133822 -201530531 + AluSx SINE Alu 3 312 0 499 321 130 57 chr1 41133822 41134002 -201530351 - L2 LINE L2 -272 3041 2804 383 269 19 0 chr1 41134013 41134121 -201530232 - L2 LINE L2 -641 2673 2564 245 239 228 0 chr1 41135497 41135589 -201528764 - L2 LINE L2 -5 3267 3155 2579 41 0 3 chr1 41136008 41136302 -201528051 + AluY SINE Alu 1 293 -18 2179 99 33 0 chr1 41136314 41136616 -201527737 + AluSx SINE Alu 1 312 0 774 145 48 0 chr1 41136821 41136945 -201527408 + AluJo/FLAM SINE Alu 2 131 -171 2029 138 14 10 chr1 41136947 41137244 -201527109 + AluSx SINE Alu 1 298 -14 250 305 191 14 chr1 41137543 41137753 -201526600 + L1ME LINE L1 5511 5757 -364 21 57 0 0 chr1 41137832 41137867 -201526486 + AT_rich Low_complexity Low_complexity 1 35 0 835 154 0 22 chr1 41138110 41138246 -201526107 - FLAM_C SINE Alu 0 133 1 226 289 178 44 chr1 41139498 41139633 -201524720 + MIR3 SINE MIR 44 196 -12 2014 102 40 14 chr1 41139724 41140023 -201524330 + AluSx SINE Alu 1 306 0 286 294 42 8 chr1 41140824 41140943 -201523410 + MIR3 SINE MIR 9 131 -77 2064 147 0 3 chr1 41140943 41141243 -201523110 - AluSx SINE Alu -13 299 1 301 361 31 26 chr1 41142213 41142404 -201521949 + L2 LINE L2 3107 3298 -15 22 0 0 0 chr1 41142783 41142805 -201521548 + GC_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 41146298 41146326 -201518027 + AT_rich Low_complexity Low_complexity 1 28 0 2203 85 14 0 chr1 41147740 41148033 -201516320 + AluSp SINE Alu 1 297 -16 24 0 0 0 chr1 41148736 41148760 -201515593 + AT_rich Low_complexity Low_complexity 1 24 0 206 118 0 0 chr1 41149661 41149695 -201514658 + (T)n Simple_repeat Simple_repeat 1 34 0 186 328 159 11 chr1 41150535 41150724 -201513629 + L2 LINE L2 2806 3022 -250 1527 153 6 61 chr1 41150996 41151134 -201513219 + AluJo SINE Alu 6 150 -162 2233 119 0 0 chr1 41151134 41151446 -201512907 + AluSx SINE Alu 1 312 0 1527 153 6 61 chr1 41151446 41151620 -201512733 + AluJo SINE Alu 150 301 -11 458 318 32 37 chr1 41151626 41151815 -201512538 + MIR3 SINE MIR 14 201 -7 537 253 41 20 chr1 41152715 41152861 -201511492 + MIR SINE MIR 4 152 -110 2423 114 87 51 chr1 41152862 41153044 -201511309 + MSTC LTR MaLR 1 175 -253 608 217 25 25 chr1 41153044 41153164 -201511189 + FLAM_A SINE Alu 4 123 -10 2362 65 0 0 chr1 41153164 41153454 -201510899 + AluY SINE Alu 1 290 -21 2322 70 3 0 chr1 41153454 41153752 -201510601 + AluY SINE Alu 1 299 -12 2423 114 87 51 chr1 41153752 41153980 -201510373 + MSTC LTR MaLR 174 428 0 299 247 157 0 chr1 41153990 41154079 -201510274 + MIR SINE MIR 157 259 -3 689 47 0 0 chr1 41154084 41154169 -201510184 + AluS SINE Alu 3 87 -225 2386 90 0 0 chr1 41154411 41154723 -201509630 + AluSx SINE Alu 1 312 0 238 362 126 23 chr1 41154723 41154897 -201509456 + L3 LINE CR1 1230 1421 -156 636 255 81 6 chr1 41155110 41155271 -201509082 + MIR SINE MIR 8 180 -82 1527 140 39 18 chr1 41155313 41155592 -201508761 + L1MC2 LINE L1 5949 6233 -111 1593 162 15 4 chr1 41155637 41155903 -201508450 + AluJb SINE Alu 1 269 -43 189 0 0 0 chr1 41155913 41155934 -201508419 + (TAA)n Simple_repeat Simple_repeat 3 23 0 274 193 105 0 chr1 41155934 41155991 -201508362 + L1MC2 LINE L1 6227 6289 -55 205 240 0 40 chr1 41156258 41156308 -201508045 + L2 LINE L2 3200 3247 -25 1682 169 3 32 chr1 41157894 41158208 -201506145 + AluJb SINE Alu 1 305 -7 803 166 0 28 chr1 41158741 41158886 -201505467 - FLAM_C SINE Alu -1 142 2 963 225 61 9 chr1 41158903 41159116 -201505237 + MER58A DNA MER1_type 1 224 0 2142 98 10 0 chr1 41159156 41159452 -201504901 + AluSx SINE Alu 1 299 -13 573 277 81 61 chr1 41159797 41159980 -201504373 - MER102b DNA MER1_type -1087 341 163 1768 155 3 14 chr1 41159980 41160277 -201504076 - AluJo SINE Alu -18 294 1 573 277 81 61 chr1 41160277 41160330 -201504023 - MER102b DNA MER1_type -1265 163 113 2329 131 24 71 chr1 41160330 41160781 -201503572 + Tigger2a DNA MER2_type 1 430 -4 573 277 81 61 chr1 41160781 41160853 -201503500 - MER102b DNA MER1_type -1315 113 26 1451 168 69 18 chr1 41161038 41161312 -201503041 - AluJo SINE Alu -13 289 2 1921 140 0 0 chr1 41161437 41161722 -201502631 + AluSx SINE Alu 1 285 -27 631 189 103 70 chr1 41161783 41162026 -201502327 + MER112 DNA MER1_type 3 253 -3 2130 87 0 17 chr1 41162074 41162402 -201501951 - AluY SINE Alu 0 323 1 341 91 0 0 chr1 41162402 41162446 -201501907 - Alu SINE Alu -259 44 1 501 29 143 0 chr1 41162529 41162599 -201501754 + MADE1 DNA Mariner 1 80 0 1750 211 26 86 chr1 41162609 41163039 -201501314 + L1ME3A LINE L1 5648 6032 -138 2213 111 0 0 chr1 41163039 41163345 -201501008 - AluSq SINE Alu -7 306 1 1750 211 26 86 chr1 41163345 41163476 -201500877 + L1ME3A LINE L1 6032 6169 -1 829 138 94 0 chr1 41163849 41163987 -201500366 - AluJ SINE Alu -3 309 159 23 0 0 0 chr1 41164024 41164047 -201500306 + AT_rich Low_complexity Low_complexity 1 23 0 900 145 7 0 chr1 41164055 41164200 -201500153 - AluJ SINE Alu -160 152 7 2375 61 0 10 chr1 41164241 41164551 -201499802 + AluY SINE Alu 1 307 -4 225 215 185 0 chr1 41164872 41164937 -201499416 - L3 LINE CR1 -13 1564 1488 3009 224 48 53 chr1 41164989 41165990 -201498363 - L1ME LINE L1 -5069 1001 6 209 354 30 10 chr1 41166011 41166110 -201498243 + MER5A DNA MER1_type 60 160 -29 199 250 125 0 chr1 41166119 41166167 -201498186 - L3 LINE CR1 -76 1501 1448 28 0 0 0 chr1 41166526 41166554 -201497799 + AT_rich Low_complexity Low_complexity 1 28 0 320 293 160 0 chr1 41166636 41166742 -201497611 + L2 LINE L2 3149 3271 -1 1091 76 19 19 chr1 41167224 41167381 -201496972 - L1PA5 LINE L1 -5 6149 5993 2133 98 0 7 chr1 41167465 41167760 -201496593 + AluSg SINE Alu 1 293 -17 302 224 112 60 chr1 41167972 41168106 -201496247 - MIR SINE MIR -114 148 8 1388 259 78 12 chr1 41168263 41168684 -201495669 - L2 LINE L2 0 3313 2840 1389 195 47 3 chr1 41168684 41168982 -201495371 + AluJb SINE Alu 1 311 -1 1388 259 78 12 chr1 41168982 41169087 -201495266 - L2 LINE L2 -473 2840 2743 391 153 0 0 chr1 41169087 41169146 -201495207 + AluJ/FLAM SINE Alu 1 59 -243 31 26 0 0 chr1 41169195 41169233 -201495120 + AT_rich Low_complexity Low_complexity 1 38 0 1375 266 106 31 chr1 41169233 41169685 -201494668 - L2 LINE L2 -557 2757 2272 2318 68 3 0 chr1 41170547 41170839 -201493514 - AluY SINE Alu -18 293 1 203 316 193 12 chr1 41171316 41171487 -201492866 + L2 LINE L2 3112 3313 0 1718 156 14 0 chr1 41171809 41172084 -201492269 - AluJb SINE Alu -20 292 14 2035 145 0 0 chr1 41172235 41172546 -201491807 - AluSx SINE Alu -1 311 1 180 318 102 45 chr1 41172665 41172753 -201491600 - L2 LINE L2 -24 3289 3197 201 354 143 62 chr1 41172927 41173136 -201491217 + L2 LINE L2 3044 3269 -3 2307 84 3 0 chr1 41173535 41173844 -201490509 - AluSq SINE Alu -3 310 1 455 289 15 18 chr1 41173971 41174174 -201490179 + MIR SINE MIR 3 262 0 1672 163 19 29 chr1 41176488 41176801 -201487552 + AluJo SINE Alu 1 310 -2 844 178 7 7 chr1 41176847 41176993 -201487360 + AluJb SINE Alu 122 267 -45 23 54 0 0 chr1 41177044 41177081 -201487272 + AT_rich Low_complexity Low_complexity 1 37 0 419 319 101 4 chr1 41177483 41177721 -201486632 - L2 LINE L2 -1265 2049 1789 1436 181 71 0 chr1 41177760 41178041 -201486312 - AluJo SINE Alu -11 301 1 1247 190 119 19 chr1 41178238 41178548 -201485805 - MER58B DNA MER1_type 0 341 1 209 163 0 23 chr1 41178700 41178743 -201485610 + L2 LINE L2 3268 3309 -4 442 276 57 0 chr1 41179785 41179908 -201484445 + L2 LINE L2 3183 3312 -1 270 306 222 35 chr1 41179970 41180231 -201484122 - L2 LINE L2 -1304 2010 1701 186 103 0 0 chr1 41180238 41180267 -201484086 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1535 191 18 4 chr1 41180269 41180546 -201483807 - AluJb SINE Alu -31 281 1 204 335 100 81 chr1 41180863 41181123 -201483230 - L2 LINE L2 -36 3236 2972 180 0 0 0 chr1 41181132 41181152 -201483201 + (A)n Simple_repeat Simple_repeat 1 20 0 606 304 122 9 chr1 41182002 41182216 -201482137 + MIR SINE MIR 9 246 -16 1422 127 124 33 chr1 41182449 41182724 -201481629 + AluJb SINE Alu 1 300 -2 486 264 127 61 chr1 41182968 41183165 -201481188 - MIR SINE MIR -6 256 47 2137 116 0 0 chr1 41183884 41184185 -201480168 + AluSx SINE Alu 1 301 -11 670 206 100 18 chr1 41184464 41184634 -201479719 + AluJo SINE Alu 116 299 -13 1510 175 33 13 chr1 41184701 41185004 -201479349 + AluJb SINE Alu 1 309 -3 821 201 0 24 chr1 41185068 41185237 -201479116 + FRAM SINE Alu 12 176 0 359 171 13 0 chr1 41185254 41185330 -201479023 + GA-rich Low_complexity Low_complexity 2 78 0 319 222 71 79 chr1 41186027 41186153 -201478200 + L3 LINE CR1 585 709 -868 340 239 68 0 chr1 41186360 41186448 -201477905 - MER103 DNA DNA -71 95 2 22 0 0 0 chr1 41186594 41186616 -201477737 + AT_rich Low_complexity Low_complexity 1 22 0 1938 142 0 0 chr1 41187376 41187671 -201476682 - AluSx SINE Alu -17 295 1 412 297 104 67 chr1 41187827 41188094 -201476259 + L2 LINE L2 2614 2895 -377 1145 204 23 5 chr1 41188094 41188310 -201476043 + MER58A DNA MER1_type 2 221 -3 412 297 104 67 chr1 41188310 41188513 -201475840 + L2 LINE L2 2895 3089 -183 1669 283 100 35 chr1 41188693 41188746 -201475607 + L3 LINE CR1 766 814 -763 2224 99 0 3 chr1 41188746 41189049 -201475304 - AluSq SINE Alu -11 302 1 1669 283 100 35 chr1 41189049 41189137 -201475216 + L3 LINE CR1 814 895 -682 1050 213 53 0 chr1 41189137 41189344 -201475009 - MER20 DNA MER1_type 0 219 2 1669 283 100 35 chr1 41189344 41189518 -201474835 + L3 LINE CR1 895 1056 -521 2306 83 3 0 chr1 41189518 41189818 -201474535 + AluSp SINE Alu 1 301 -12 1669 283 100 35 chr1 41189818 41190232 -201474121 + L3 LINE CR1 1056 1544 -33 2155 112 0 3 chr1 41190416 41190711 -201473642 + AluSq SINE Alu 1 294 -19 1765 137 25 56 chr1 41190907 41191229 -201473124 - AluSx SINE Alu 0 312 1 2257 96 0 0 chr1 41191233 41191534 -201472819 - AluSx SINE Alu -4 308 8 908 119 0 8 chr1 41192636 41192770 -201471583 + FLAM_C SINE Alu 1 133 0 433 302 148 5 chr1 41193010 41193199 -201471154 + MIR SINE MIR 20 235 -27 255 291 12 23 chr1 41193383 41193469 -201470884 + L2 LINE L2 3187 3271 -1 2157 117 0 7 chr1 41194344 41194643 -201469710 - AluSx SINE Alu -15 297 1 2494 92 3 0 chr1 41194819 41195125 -201469228 - AluSp SINE Alu -6 307 1 260 98 39 0 chr1 41195139 41195190 -201469163 - Alu SINE Alu 0 302 250 248 0 31 0 chr1 41195327 41195359 -201468994 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 701 113 9 9 chr1 41195359 41195468 -201468885 - AluSp/q SINE Alu -28 285 177 6265 60 20 56 chr1 41195623 41196523 -201467830 + SVA Other Other 1 868 -518 2170 135 0 13 chr1 41196819 41197131 -201467222 - AluSx SINE Alu -4 308 1 1493 186 51 7 chr1 41197260 41197535 -201466818 - AluJo SINE Alu -24 288 2 286 160 2 5 chr1 41198680 41198746 -201465607 - AluY SINE Alu -222 86 43 971 78 16 0 chr1 41199683 41199812 -201464541 - AluY SINE Alu -10 301 171 2256 112 0 19 chr1 41199930 41200104 -201464249 - AluSq SINE Alu -6 307 140 2448 89 0 0 chr1 41200104 41200406 -201463947 - AluSq SINE Alu -10 303 2 2256 112 0 19 chr1 41200406 41200544 -201463809 - AluSq SINE Alu -173 140 1 760 213 111 32 chr1 41200664 41200880 -201463473 + MIR SINE MIR 20 252 -10 253 320 0 0 chr1 41200903 41200981 -201463372 - MIR SINE MIR -5 257 180 26 0 0 0 chr1 41200981 41201007 -201463346 + AT_rich Low_complexity Low_complexity 1 26 0 2214 96 11 4 chr1 41201013 41201328 -201463025 - AluSg SINE Alu 0 317 1 2166 127 0 23 chr1 41201328 41201500 -201462853 - AluSq SINE Alu -12 301 138 2218 105 3 3 chr1 41201500 41201834 -201462519 - AluSx SINE Alu 0 312 1 2166 127 0 23 chr1 41201834 41201969 -201462384 - AluSq SINE Alu -175 138 1 2265 105 0 0 chr1 41201980 41202288 -201462065 - AluSg SINE Alu 0 308 1 529 269 22 8 chr1 41202292 41202426 -201461927 - MIR SINE MIR -70 192 57 778 126 0 70 chr1 41202452 41202595 -201461758 + FLAM_C SINE Alu 1 133 0 1010 107 101 0 chr1 41202705 41202854 -201461499 - AluSc SINE Alu -21 288 125 1146 197 136 4 chr1 41203000 41203264 -201461089 + AluJo SINE Alu 1 299 -3 2216 136 0 3 chr1 41203269 41203579 -201460774 + AluSx SINE Alu 3 311 -1 23 33 0 0 chr1 41203775 41203805 -201460548 + AT_rich Low_complexity Low_complexity 1 30 0 618 111 102 0 chr1 41203805 41203913 -201460440 - FLAM_A SINE Alu -14 119 1 2110 95 32 3 chr1 41204672 41204957 -201459396 - AluSc SINE Alu -15 294 2 549 68 0 0 chr1 41205384 41205457 -201458896 + Alu SINE Alu 2 74 -237 2312 78 14 3 chr1 41205592 41205886 -201458467 - AluY SINE Alu -14 297 1 1193 131 0 23 chr1 41205946 41206121 -201458232 - AluSg/x SINE Alu -8 304 134 2401 95 3 0 chr1 41206121 41206425 -201457928 - AluSg SINE Alu -5 305 1 1171 153 0 22 chr1 41206485 41206668 -201457685 - AluSg/x SINE Alu 0 312 134 2289 115 0 13 chr1 41206668 41206982 -201457371 - AluSg SINE Alu 0 310 1 258 307 26 26 chr1 41206984 41207098 -201457255 + L2 LINE L2 3148 3261 -52 404 250 29 0 chr1 41207128 41207232 -201457121 + MIR SINE MIR 40 146 -62 2059 136 3 3 chr1 41207865 41208159 -201456194 - AluSx SINE Alu -18 294 1 606 200 87 0 chr1 41208324 41208439 -201455914 + AluJo/FLAM SINE Alu 5 129 -173 700 109 0 0 chr1 41208439 41208540 -201455813 - AluSp/q SINE Alu -22 291 191 695 107 91 0 chr1 41208649 41208770 -201455583 + MER119 DNA MER1_type 402 533 -50 2240 106 7 10 chr1 41208770 41209073 -201455280 - AluSp SINE Alu -11 302 1 3413 165 29 35 chr1 41209073 41209157 -201455196 - L1MC3 LINE L1 -1393 6392 6309 2310 89 17 0 chr1 41209157 41209450 -201454903 - AluSp SINE Alu -13 300 3 3413 165 29 35 chr1 41209450 41209642 -201454711 - L1MC3 LINE L1 -1476 6309 6117 2420 78 3 0 chr1 41209642 41209938 -201454415 - AluY SINE Alu -14 297 1 3413 165 29 35 chr1 41209938 41210394 -201453959 - L1MC3 LINE L1 -1668 6117 5664 919 175 0 0 chr1 41210409 41210552 -201453801 - FRAM SINE Alu -23 153 11 249 40 0 60 chr1 41210555 41210605 -201453748 + (TTTTA)n Simple_repeat Simple_repeat 4 50 0 7135 54 18 33 chr1 41210612 41211678 -201452675 - SVA Other Other -629 1375 433 303 94 19 19 chr1 41211781 41211834 -201452519 - Alu SINE Alu -248 53 1 408 191 27 0 chr1 41213070 41213164 -201451189 + AluS SINE Alu 1 71 -232 186 178 89 0 chr1 41213394 41213439 -201450914 + L2 LINE L2 3264 3312 -1 2473 75 3 0 chr1 41213901 41214193 -201450160 - AluSp SINE Alu -20 293 1 2223 117 7 0 chr1 41214376 41214675 -201449678 - AluSx SINE Alu -11 301 1 932 203 212 0 chr1 41215219 41215460 -201448893 - AluSg SINE Alu -7 293 2 898 188 57 5 chr1 41216140 41216332 -201448021 + MER105 DNA DNA 2 203 -1 2126 150 0 0 chr1 41216815 41217122 -201447231 - AluJb SINE Alu -5 307 1 1111 164 14 37 chr1 41217157 41217371 -201446982 - AluJo SINE Alu -19 293 85 643 122 10 0 chr1 41217371 41217469 -201446884 - AluSc SINE Alu -61 248 150 1936 109 0 0 chr1 41217471 41217727 -201446626 + AluSx SINE Alu 54 309 -3 2322 87 3 0 chr1 41218424 41218713 -201445640 + AluSc SINE Alu 16 305 -4 2066 111 0 11 chr1 41218855 41219134 -201445219 + AluSx SINE Alu 24 299 -13 2229 125 7 0 chr1 41219390 41219694 -201444659 + AluSx SINE Alu 5 310 -2 768 182 0 0 chr1 41219694 41219826 -201444527 + FLAM_C SINE Alu 2 133 0 1635 170 4 0 chr1 41219990 41220249 -201444104 + AluJb SINE Alu 9 268 -44 2319 100 0 7 chr1 41220432 41220731 -201443622 + AluSx SINE Alu 5 301 -11 29 0 0 0 chr1 41220731 41220760 -201443593 + AT_rich Low_complexity Low_complexity 1 29 0 2497 75 7 0 chr1 41221164 41221471 -201442882 + AluSp SINE Alu 1 309 -4 2042 104 10 21 chr1 41221482 41221771 -201442582 + AluSx SINE Alu 6 291 -21 2027 115 3 25 chr1 41221771 41221907 -201442446 + AluSx SINE Alu 1 138 -174 2578 74 3 0 chr1 41221907 41222217 -201442136 + AluY SINE Alu 1 311 0 2027 115 3 25 chr1 41222217 41222366 -201441987 + AluSx SINE Alu 138 280 -32 204 67 0 0 chr1 41222371 41222401 -201441952 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 225 336 103 0 chr1 41223187 41223303 -201441050 + MER117 DNA MER1_type 70 197 0 1358 136 104 18 chr1 41225713 41225933 -201438420 - AluJo SINE Alu -73 239 1 313 235 37 0 chr1 41225954 41226035 -201438318 - MIR3 SINE MIR -47 161 78 383 296 26 9 chr1 41226195 41226310 -201438043 + MIR SINE MIR 34 150 -112 385 271 113 0 chr1 41227620 41227753 -201436600 - MIR SINE MIR -6 256 109 280 363 0 0 chr1 41228217 41228308 -201436045 + MIR SINE MIR 1 91 -171 2009 138 7 7 chr1 41228309 41228607 -201435746 - AluSq SINE Alu -15 298 1 676 229 26 7 chr1 41228615 41228768 -201435585 - FRAM SINE Alu -9 157 2 1775 129 39 111 chr1 41228838 41229172 -201435181 + AluJo SINE Alu 1 310 -2 693 145 61 30 chr1 41229208 41229339 -201435014 + AluJo SINE Alu 2 136 -176 194 222 37 0 chr1 41229398 41229452 -201434901 - MIR SINE MIR -138 124 69 321 208 50 50 chr1 41229463 41229564 -201434789 - MIR3 SINE MIR -24 184 84 455 333 84 40 chr1 41230241 41230317 -201434036 - MIR SINE MIR 0 262 191 2530 53 0 16 chr1 41230317 41230620 -201433733 - AluY SINE Alu -13 298 1 455 333 84 40 chr1 41230620 41230768 -201433585 - MIR SINE MIR -71 191 28 207 0 0 0 chr1 41230772 41230795 -201433558 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2838 16 0 0 chr1 41230808 41231111 -201433242 - AluY SINE Alu -8 303 1 1608 148 76 55 chr1 41231112 41231403 -201432950 - AluJb SINE Alu -15 297 1 232 301 27 0 chr1 41231530 41231603 -201432750 + L2 LINE L2 3160 3234 -38 943 179 12 6 chr1 41232856 41233024 -201431329 + FRAM SINE Alu 1 161 -15 990 45 0 0 chr1 41233026 41233138 -201431215 + AluY SINE Alu 1 112 -199 388 213 83 134 chr1 41233782 41233872 -201430481 + MIR SINE MIR 51 144 -118 2503 78 3 0 chr1 41233872 41234180 -201430173 + AluY SINE Alu 1 309 -2 388 213 83 134 chr1 41234180 41234305 -201430048 + MIR SINE MIR 144 255 -7 21 36 0 0 chr1 41234901 41234929 -201429424 + GC_rich Low_complexity Low_complexity 1 28 0 371 230 30 0 chr1 41235083 41235183 -201429170 + MIR SINE MIR 34 136 -72 25 0 0 0 chr1 41236288 41236313 -201428040 + AT_rich Low_complexity Low_complexity 1 25 0 896 172 35 6 chr1 41236317 41236486 -201427867 + FAM SINE Alu 1 174 -1 2318 101 0 0 chr1 41236505 41236801 -201427552 + AluSx SINE Alu 1 296 -16 2304 109 0 0 chr1 41237121 41237414 -201426939 + AluSg SINE Alu 1 293 -17 2026 117 7 30 chr1 41237747 41237879 -201426474 + AluSg SINE Alu 1 135 -175 2115 102 24 24 chr1 41237879 41238197 -201426156 + AluSc SINE Alu 1 309 0 2026 117 7 30 chr1 41238197 41238363 -201425990 + AluSg SINE Alu 135 292 -18 2622 64 0 3 chr1 41238702 41239014 -201425339 + AluY SINE Alu 1 311 0 364 269 11 123 chr1 41239216 41239415 -201424938 - L2 LINE L2 -81 3191 3026 1483 209 82 3 chr1 41239415 41239731 -201424622 + MER58B DNA MER1_type 1 341 0 364 269 11 123 chr1 41239731 41239791 -201424562 - L2 LINE L2 -246 3026 2961 533 349 84 18 chr1 41239860 41240195 -201424158 - L2 LINE L2 -454 2860 2504 428 121 30 0 chr1 41240207 41240273 -201424080 - MLT1A1 LTR MaLR -1 364 297 1961 141 36 10 chr1 41240273 41240577 -201423776 + AluJb SINE Alu 1 312 0 1515 162 36 48 chr1 41240630 41240939 -201423414 - MLT1A1 LTR MaLR -60 305 1 253 358 145 16 chr1 41241421 41241614 -201422739 - MIR SINE MIR -26 236 19 2414 78 3 0 chr1 41241850 41242165 -201422188 - AluSp SINE Alu 0 316 1 2184 117 3 3 chr1 41242415 41242713 -201421640 - AluSp SINE Alu -15 298 1 608 263 147 0 chr1 41242725 41242923 -201421430 - MIR SINE MIR 0 262 36 22 0 0 0 chr1 41243175 41243197 -201421156 + AT_rich Low_complexity Low_complexity 1 22 0 1653 148 98 0 chr1 41243288 41243565 -201420788 - AluSx SINE Alu -8 304 1 348 269 134 15 chr1 41243582 41243716 -201420637 + MIR3 SINE MIR 58 207 -1 181 174 130 29 chr1 41244246 41244315 -201420038 - L2 LINE L2 0 3272 3197 1384 206 54 0 chr1 41244391 41244687 -201419666 - AluJo SINE Alu 0 312 1 278 272 206 22 chr1 41245891 41246071 -201418282 + MIR SINE MIR 47 259 -3 620 108 0 0 chr1 41247237 41247320 -201417033 + AluS SINE Alu 2 84 -229 2201 86 3 0 chr1 41247457 41247759 -201416594 - AluSg1 SINE Alu -6 303 1 2274 93 0 3 chr1 41248215 41248525 -201415828 - AluY SINE Alu -2 309 1 21 0 0 0 chr1 41248528 41248549 -201415804 + AT_rich Low_complexity Low_complexity 1 21 0 667 94 0 0 chr1 41248549 41248634 -201415719 - U6 snRNA snRNA -22 85 1 2140 101 3 3 chr1 41248681 41248987 -201415366 - AluSg SINE Alu -4 306 1 1141 189 0 0 chr1 41249074 41249270 -201415083 + AluJo SINE Alu 1 196 -116 205 256 24 0 chr1 41249272 41249354 -201414999 + GA-rich Low_complexity Low_complexity 2 85 0 2085 128 0 3 chr1 41251533 41251839 -201412514 - AluSg SINE Alu -5 305 1 449 211 208 7 chr1 41252323 41252463 -201411890 - MIR SINE MIR -31 231 65 1463 179 35 3 chr1 41252634 41252919 -201411434 + AluJo SINE Alu 1 294 -18 2189 80 10 29 chr1 41252924 41253202 -201411151 + AluSg SINE Alu 1 274 -36 279 0 0 0 chr1 41253202 41253233 -201411120 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2189 80 10 29 chr1 41253233 41253265 -201411088 + AluSg SINE Alu 274 305 -5 1711 127 39 0 chr1 41253877 41254136 -201410217 - AluSx SINE Alu -8 304 36 191 250 18 36 chr1 41254137 41254193 -201410160 - MIR SINE MIR -3 259 205 1374 112 5 5 chr1 41254301 41254498 -201409855 + AluSg/x SINE Alu 84 280 -30 209 56 0 28 chr1 41254503 41254539 -201409814 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1127 268 89 27 chr1 41255268 41255794 -201408559 - L1MC4a LINE L1 -1866 5942 5384 1791 115 84 3 chr1 41255794 41256081 -201408272 - AluSg SINE Alu 0 310 1 707 224 18 24 chr1 41256081 41256246 -201408107 - FAM SINE Alu -6 43 1 1354 34 5 102 chr1 41256276 41256482 -201407871 - AluY SINE Alu -20 291 106 616 167 9 0 chr1 41256586 41256700 -201407653 - AluY SINE Alu -192 119 5 756 141 0 37 chr1 41256703 41256838 -201407515 - FLAM_C SINE Alu 0 143 14 1730 162 7 7 chr1 41256888 41257178 -201407175 + AluJb SINE Alu 13 302 -10 2326 76 0 0 chr1 41257714 41258005 -201406348 + AluY SINE Alu 1 291 -20 1966 125 7 0 chr1 41258463 41258759 -201405594 - AluSx SINE Alu -7 305 8 778 252 117 76 chr1 41260475 41260890 -201403463 - MLT1H LTR MaLR 0 549 153 2320 81 0 10 chr1 41260890 41261197 -201403156 - AluSp SINE Alu -9 304 1 1995 127 0 16 chr1 41261197 41261369 -201402984 - AluSx SINE Alu -9 303 137 1999 116 24 0 chr1 41261369 41261661 -201402692 - AluSx SINE Alu -13 299 1 1995 127 0 16 chr1 41261661 41261796 -201402557 - AluSx SINE Alu -175 137 1 1998 113 0 0 chr1 41261798 41262106 -201402247 - AluSx SINE Alu 0 308 1 2062 106 7 10 chr1 41262106 41262409 -201401944 - AluSx SINE Alu -10 302 1 778 252 117 76 chr1 41262409 41262447 -201401906 - MLT1H LTR MaLR -395 154 71 2220 170 0 3 chr1 41262489 41262847 -201401506 - MLT1A1 LTR MaLR -8 357 1 922 232 36 9 chr1 41262871 41263091 -201401262 + AluJo SINE Alu 1 226 -86 294 346 19 9 chr1 41263394 41263501 -201400852 - MIR3 SINE MIR -39 169 62 2032 89 4 7 chr1 41263502 41263822 -201400531 + AluSg SINE Alu 1 319 0 815 158 0 23 chr1 41263837 41263970 -201400383 + FLAM_C SINE Alu 1 130 -3 2321 84 3 3 chr1 41263989 41264299 -201400054 + AluSx SINE Alu 1 310 -2 209 246 35 18 chr1 41264312 41264369 -201399984 - MIR3 SINE MIR -137 71 14 1788 94 101 4 chr1 41264947 41265224 -201399129 - AluSq SINE Alu -9 304 1 596 262 178 14 chr1 41265672 41265886 -201398467 - MIR SINE MIR -11 251 3 1916 124 3 0 chr1 41266041 41266324 -201398029 - AluSc SINE Alu -22 287 4 270 0 0 0 chr1 41266842 41266872 -201397481 + (TG)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr1 41266871 41266893 -201397460 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 751 175 0 36 chr1 41267036 41267173 -201397180 - AluJb SINE Alu -94 218 87 391 265 41 41 chr1 41267593 41267763 -201396590 + L2 LINE L2 2331 2500 -814 250 258 0 15 chr1 41268014 41268080 -201396273 + MER5A DNA MER1_type 39 103 -86 2169 87 14 0 chr1 41268083 41268370 -201395983 - AluSx SINE Alu -17 295 5 185 288 113 12 chr1 41268750 41268830 -201395523 + L2 LINE L2 3224 3311 -2 758 126 98 42 chr1 41269083 41269226 -201395127 + Tigger3(Golem) DNA MER2_type 2877 3027 -2 2065 119 3 3 chr1 41269642 41269953 -201394400 - AluSx SINE Alu -1 311 1 2189 100 0 13 chr1 41269953 41270263 -201394090 - AluSq SINE Alu -7 306 1 1620 172 0 14 chr1 41270578 41270875 -201393478 + AluJo SINE Alu 1 293 -19 1020 104 0 0 chr1 41272085 41272219 -201392134 - AluSp SINE Alu -144 169 36 977 181 6 0 chr1 41272229 41272406 -201391947 + AluJb SINE Alu 132 309 -3 2729 85 11 3 chr1 41272463 41272841 -201391512 + MER41A LTR ERV1 1 381 -173 2338 68 0 3 chr1 41272841 41273137 -201391216 + AluY SINE Alu 1 295 -16 870 166 73 0 chr1 41273137 41273288 -201391065 + AluSg/x SINE Alu 132 293 -17 621 74 0 21 chr1 41273289 41273384 -201390969 + MER41A-int LTR ERV1 2854 2946 -3000 * 12763 104 18 20 chr1 41273371 41273441 -201390912 + MER41A-int LTR ERV1 2856 2925 -3021 1971 136 7 3 chr1 41273441 41273750 -201390603 + AluSg SINE Alu 1 310 0 12763 104 18 20 chr1 41273750 41273992 -201390361 + MER41A-int LTR ERV1 2925 3166 -2780 2201 91 3 0 chr1 41273992 41274288 -201390065 + AluSp SINE Alu 1 297 -16 12763 104 18 20 chr1 41274288 41274515 -201389838 + MER41A-int LTR ERV1 3166 3392 -2554 2018 115 0 11 chr1 41274515 41274825 -201389528 + AluSx SINE Alu 1 307 0 12763 104 18 20 chr1 41274825 41275971 -201388382 + MER41A-int LTR ERV1 3392 4538 -1408 2089 136 0 13 chr1 41275971 41276287 -201388066 + AluSx SINE Alu 1 312 0 12763 104 18 20 chr1 41276287 41276877 -201387476 + MER41A-int LTR ERV1 4538 5943 -3 2280 113 9 3 chr1 41276877 41277212 -201387141 + MER41A LTR ERV1 1 337 -217 840 177 98 47 chr1 41277212 41277599 -201386754 + LTR7 LTR ERV1 1 450 0 1731 183 79 68 chr1 41277599 41277851 -201386502 + HERVH LTR ERV1 1 262 -7451 873 103 0 22 chr1 41277851 41277987 -201386366 + FLAM_C SINE Alu 1 133 0 1731 183 79 68 chr1 41277987 41278188 -201386165 + HERVH LTR ERV1 262 459 -7254 13044 134 5 12 chr1 41278247 41280292 -201384061 + HERVH LTR ERV1 800 2830 -4883 4228 162 7 12 chr1 41280292 41281323 -201383030 + HERVH LTR ERV1 3357 4319 -2287 * 6910 117 12 1 chr1 41281321 41282316 -201382037 + HERVH LTR ERV1 5011 6016 -1697 3591 118 5 26 chr1 41282309 41282373 -201381980 + HERVH LTR ERV1 7157 7221 -492 * 2258 104 0 0 chr1 41282373 41282682 -201381671 + AluY SINE Alu 1 309 -2 3591 118 5 26 chr1 41282682 41283186 -201381167 + HERVH LTR ERV1 7221 7713 0 781 184 106 49 chr1 41283186 41283571 -201380782 + LTR7 LTR ERV1 1 450 0 * 1574 88 8 29 chr1 41283571 41283795 -201380558 + MER41A LTR ERV1 336 554 0 238 279 113 113 chr1 41283862 41284288 -201380065 + L2 LINE L2 2827 3252 -20 1383 246 3 18 chr1 41284600 41284938 -201379415 - MER46C DNA MER2_type -1 337 5 325 162 95 108 chr1 41285021 41285169 -201379184 + L1ME4a LINE L1 5926 6071 -50 312 259 86 0 chr1 41285236 41285317 -201379036 + MIR SINE MIR 91 178 -84 2018 134 0 0 chr1 41285485 41285783 -201378570 - AluSx SINE Alu -6 306 9 2217 108 0 6 chr1 41285799 41286114 -201378239 - AluSq SINE Alu 0 313 1 678 153 0 32 chr1 41286158 41286282 -201378071 + FLAM_C SINE Alu 21 140 -3 286 208 0 0 chr1 41286282 41286330 -201378023 - MER3 DNA MER1_type -121 88 41 331 306 106 38 chr1 41287164 41287324 -201377029 + MIR SINE MIR 82 252 -10 512 252 16 24 chr1 41287440 41287567 -201376786 - MIR SINE MIR -109 153 28 1874 95 3 42 chr1 41288147 41288459 -201375894 + AluSx SINE Alu 9 309 0 1152 197 63 8 chr1 41288459 41288698 -201375655 - MIR SINE MIR -6 256 5 2169 117 0 0 chr1 41288873 41289182 -201375171 + AluSx SINE Alu 1 309 -3 410 279 168 24 chr1 41289183 41289315 -201375038 + MIR SINE MIR 13 125 -137 2213 95 0 0 chr1 41289315 41289619 -201374734 + AluY SINE Alu 1 304 -7 410 279 168 24 chr1 41289619 41289694 -201374659 + MIR SINE MIR 125 250 -12 1342 176 20 94 chr1 41290055 41290218 -201374135 + AluYb8 SINE Alu 1 128 -190 1885 105 15 77 chr1 41290218 41290543 -201373810 + AluSx SINE Alu 1 305 -7 1342 176 20 94 chr1 41290543 41290720 -201373633 + AluYb8 SINE Alu 128 316 -2 1019 161 6 0 chr1 41290723 41290884 -201373469 + AluSg/x SINE Alu 125 286 -24 2032 63 60 4 chr1 41290920 41291221 -201373132 + AluY SINE Alu 1 316 0 208 239 15 60 chr1 41291629 41291696 -201372657 - L2 LINE L2 -4 3268 3205 207 357 135 51 chr1 41291772 41292245 -201372108 - L2 LINE L2 -385 2929 2417 2088 107 0 10 chr1 41292269 41292569 -201371784 - AluSx SINE Alu -15 297 1 2105 116 7 0 chr1 41292658 41292960 -201371393 - AluSx SINE Alu -8 304 1 1462 132 143 12 chr1 41493951 41494209 -201170144 - AluY SINE Alu -19 292 1 180 197 91 61 chr1 41496286 41496352 -201168001 + MIR SINE MIR 16 83 -125 384 103 0 0 chr1 41496393 41496451 -201167902 + (TG)n Simple_repeat Simple_repeat 2 59 0 205 338 0 0 chr1 41498790 41498861 -201165492 - MIR SINE MIR -116 146 76 2192 107 0 16 chr1 41499387 41499704 -201164649 + AluSx SINE Alu 1 312 0 1912 93 0 46 chr1 41499706 41499851 -201164502 + AluSx SINE Alu 1 128 -184 1883 110 88 4 chr1 41499851 41500124 -201164229 + AluSx SINE Alu 1 296 -16 1912 93 0 46 chr1 41500124 41500258 -201164095 + AluSx SINE Alu 128 267 -45 2037 152 0 3 chr1 41500517 41500820 -201163533 - AluJo SINE Alu -8 304 3 2243 85 6 16 chr1 41500839 41501155 -201163198 - AluSq SINE Alu 0 313 1 234 286 14 14 chr1 41501796 41501866 -201162487 + (CTGGGG)n Simple_repeat Simple_repeat 2 71 0 330 265 0 24 chr1 41502867 41502950 -201161403 - MIR SINE MIR -60 148 68 1604 152 4 36 chr1 41503140 41503417 -201160936 + AluJo SINE Alu 1 268 -44 477 244 17 0 chr1 41503717 41503893 -201160460 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 232 284 53 11 chr1 41504273 41504368 -201159985 + L2 LINE L2 2956 3054 -218 279 378 0 22 chr1 41504494 41504629 -201159724 + MIR SINE MIR 66 197 -65 959 277 24 8 chr1 41504722 41504975 -201159378 - MIR SINE MIR -4 258 2 392 297 80 22 chr1 41505370 41505590 -201158763 + MIR SINE MIR 28 256 -6 2152 102 0 31 chr1 41505654 41505976 -201158377 + AluSx SINE Alu 1 312 0 639 322 44 0 chr1 41505995 41506200 -201158153 - MIR SINE MIR -41 221 8 204 179 0 0 chr1 41507215 41507254 -201157099 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 206 286 0 0 chr1 41507376 41507425 -201156928 + (TG)n Simple_repeat Simple_repeat 2 50 0 327 49 0 0 chr1 41507921 41507962 -201156391 + (TG)n Simple_repeat Simple_repeat 1 41 0 312 27 0 0 chr1 41507961 41507998 -201156355 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 29 28 0 0 chr1 41511418 41511454 -201152899 + AT_rich Low_complexity Low_complexity 1 36 0 207 125 0 0 chr1 41512046 41512086 -201152267 + (T)n Simple_repeat Simple_repeat 1 40 0 29 0 0 0 chr1 41512815 41512844 -201151509 + GC_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 41512888 41512918 -201151435 + GC_rich Low_complexity Low_complexity 1 30 0 23 86 0 0 chr1 41513486 41513544 -201150809 + GC_rich Low_complexity Low_complexity 1 58 0 205 154 0 58 chr1 41513653 41513705 -201150648 + (CCG)n Simple_repeat Simple_repeat 2 50 0 201 159 0 0 chr1 41513871 41513915 -201150438 + (CCG)n Simple_repeat Simple_repeat 2 45 0 246 32 0 0 chr1 41514087 41514118 -201150235 + (CCG)n Simple_repeat Simple_repeat 3 33 0 292 175 10 125 chr1 41514205 41514405 -201149948 + (CCCCG)n Simple_repeat Simple_repeat 1 177 0 21 0 0 0 chr1 41514513 41514534 -201149819 + GC_rich Low_complexity Low_complexity 1 21 0 198 372 21 84 chr1 41516268 41516459 -201147894 + MIR SINE MIR 46 224 -38 333 250 29 100 chr1 41516478 41516618 -201147735 + MIR3 SINE MIR 79 208 0 515 108 0 32 chr1 41516727 41516820 -201147533 - L1PA8 LINE L1 0 6172 6083 208 276 218 35 chr1 41516845 41516932 -201147421 - MIR SINE MIR -88 174 72 399 331 32 18 chr1 41517152 41517316 -201147037 + MIR SINE MIR 41 205 -57 252 0 0 0 chr1 41517712 41517740 -201146613 + (CA)n Simple_repeat Simple_repeat 1 28 0 250 296 153 6 chr1 41519155 41519337 -201145016 + MIR3 SINE MIR 18 216 -41 222 37 0 0 chr1 41520161 41520188 -201144165 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1189 96 0 0 chr1 41522409 41522610 -201141743 - AluY SINE Alu 0 329 129 651 319 94 49 chr1 41522662 41523067 -201141286 + L2 LINE L2 2844 3266 -6 223 335 215 15 chr1 41523190 41523684 -201140669 + L3 LINE CR1 526 1172 -405 779 216 11 16 chr1 41523938 41524128 -201140225 - MIR SINE MIR 0 262 74 2123 118 7 0 chr1 41524244 41524549 -201139804 - AluSq SINE Alu -6 307 1 227 273 101 0 chr1 41524631 41524730 -201139623 - L1M1 LINE L1 -492 5813 5705 309 352 212 5 chr1 41524741 41524934 -201139419 + L3 LINE CR1 1282 1514 -63 239 157 78 20 chr1 41525037 41525078 -201139275 + MIR SINE MIR 106 149 -113 433 284 54 14 chr1 41525078 41525226 -201139127 + MIR SINE MIR 1 154 -108 1794 143 7 25 chr1 41525248 41525534 -201138819 - AluJo SINE Alu -26 286 6 2247 83 0 20 chr1 41525569 41525871 -201138482 - AluSx SINE Alu -16 296 1 847 287 92 38 chr1 41525902 41526382 -201137971 - L2 LINE L2 -54 3259 2760 190 234 21 0 chr1 41526381 41526428 -201137925 + MIR SINE MIR 154 201 -61 * 1365 269 70 15 chr1 41526428 41526886 -201137467 - LTR16C LTR ERVL -7 484 2 263 231 67 58 chr1 41527004 41527108 -201137245 - MIR SINE MIR 0 262 158 750 271 31 9 chr1 41528083 41528308 -201136045 - MIR SINE MIR -29 233 4 418 280 148 16 chr1 41528308 41528434 -201135919 + MIR SINE MIR 109 259 -3 267 31 0 0 chr1 41528715 41528747 -201135606 + (TG)n Simple_repeat Simple_repeat 2 33 0 483 302 63 11 chr1 41528776 41528965 -201135388 - L2 LINE L2 -209 3104 2906 332 143 171 0 chr1 41529053 41529123 -201135230 - L2 LINE L2 0 3272 3191 295 244 37 12 chr1 41529119 41529201 -201135152 - MIR SINE MIR -21 241 158 * 278 184 0 0 chr1 41530033 41530082 -201134271 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 627 108 0 0 chr1 41530084 41530195 -201134158 + (TTCC)n Simple_repeat Simple_repeat 1 111 0 1950 110 59 3 chr1 41530707 41530997 -201133356 + AluSq SINE Alu 1 306 -7 247 229 59 34 chr1 41531248 41531366 -201132987 + GA-rich Low_complexity Low_complexity 4 124 0 965 254 16 57 chr1 41531847 41532242 -201132111 + LTR16A LTR ERVL 1 393 -64 325 207 98 0 chr1 41532959 41533041 -201131312 + MIR SINE MIR 9 98 -164 571 277 57 110 chr1 41533769 41533881 -201130472 + L2 LINE L2 2556 2672 -641 1431 196 65 7 chr1 41533881 41534187 -201130166 + MER33 DNA MER1_type 1 324 0 571 277 57 110 chr1 41534187 41534282 -201130071 + L2 LINE L2 2672 2770 -543 2148 121 3 3 chr1 41534282 41534588 -201129765 - AluSx SINE Alu -6 306 1 909 188 0 40 chr1 41534590 41534766 -201129587 - FAM SINE Alu -3 172 4 571 277 57 110 chr1 41534766 41535098 -201129255 + L2 LINE L2 2771 3069 -244 405 290 16 32 chr1 41535178 41535302 -201129051 - MIR3 SINE MIR -2 206 85 485 294 142 28 chr1 41535313 41535531 -201128822 - MIR SINE MIR 0 262 20 354 156 0 0 chr1 41536222 41536286 -201128067 + (TG)n Simple_repeat Simple_repeat 2 65 0 210 128 0 0 chr1 41536290 41536329 -201128024 + (GA)n Simple_repeat Simple_repeat 1 39 0 818 182 39 5 chr1 41536557 41536743 -201127610 - MER63B DNA MER1_type -9 1053 7 2084 129 0 10 chr1 41536799 41537108 -201127245 - AluJb SINE Alu -6 306 1 764 251 91 37 chr1 41537215 41537458 -201126895 - MIR SINE MIR -1 261 6 237 319 120 37 chr1 41537490 41537706 -201126647 + L2 LINE L2 3033 3266 -6 1096 270 85 42 chr1 41537812 41538283 -201126070 - L2 LINE L2 -6 3307 2817 480 293 94 47 chr1 41539282 41539494 -201124859 - MIR SINE MIR -6 256 35 396 372 7 7 chr1 41539765 41539902 -201124451 + L2 LINE L2 3136 3272 0 236 421 6 6 chr1 41540051 41540210 -201124143 + (CCCCAG)n Simple_repeat Simple_repeat 6 164 0 * 375 333 14 7 chr1 41540107 41540254 -201124099 + (CCCCAA)n Simple_repeat Simple_repeat 2 149 0 706 276 59 18 chr1 41540932 41541396 -201122957 - LTR33 LTR ERVL -7 514 3 228 284 0 0 chr1 41541432 41541499 -201122854 + GA-rich Low_complexity Low_complexity 1 67 0 392 247 31 13 chr1 41541915 41542027 -201122326 - MIR SINE MIR -63 145 40 808 278 42 2 chr1 41542232 41542483 -201121870 - MIR SINE MIR 0 262 3 1976 124 0 0 chr1 41542536 41542811 -201121542 + AluSg SINE Alu 1 275 -35 271 337 21 0 chr1 41543507 41543602 -201120751 + MIR3 SINE MIR 82 178 -30 225 371 29 0 chr1 41543792 41543897 -201120456 - MIR SINE MIR -6 256 149 672 304 113 62 chr1 41544681 41545257 -201119096 - L3 LINE CR1 -46 1531 927 754 254 22 107 chr1 41545269 41545524 -201118829 + MLT1I LTR MaLR 73 289 -120 2409 104 3 0 chr1 41545524 41545833 -201118520 - AluSq SINE Alu -3 310 1 754 254 22 107 chr1 41545833 41545943 -201118410 + MLT1I LTR MaLR 289 407 -2 280 327 176 15 chr1 41546221 41546420 -201117933 + MIR SINE MIR 31 261 -1 365 208 192 8 chr1 41547007 41547132 -201117221 - MIR SINE MIR -6 256 109 1253 117 0 11 chr1 41547190 41547370 -201116983 - AluSg/x SINE Alu -1 309 132 2393 85 0 16 chr1 41547370 41547677 -201116676 - AluY SINE Alu -9 302 1 2219 119 3 13 chr1 41547731 41548034 -201116319 - AluSq SINE Alu -13 300 1 357 302 10 10 chr1 41548497 41548580 -201115773 + L1MC4 LINE L1 6614 6699 -1343 2201 104 0 3 chr1 41548580 41548868 -201115485 - AluSx SINE Alu -25 287 1 357 302 10 10 chr1 41548868 41548880 -201115473 + L1MC4 LINE L1 6698 6709 -1333 372 276 173 0 chr1 41548902 41549029 -201115324 + MIR SINE MIR 112 260 -2 398 219 90 45 chr1 41549033 41549188 -201115165 - MIR SINE MIR 0 262 101 863 174 0 0 chr1 41549188 41549326 -201115027 + FLAM_C SINE Alu 1 138 -5 344 289 0 10 chr1 41549337 41549441 -201114912 - MIR SINE MIR -93 115 13 399 250 30 98 chr1 41549472 41549600 -201114753 - MIR SINE MIR 0 262 156 2097 125 0 44 chr1 41549600 41549921 -201114432 - AluSx SINE Alu -5 307 1 399 250 30 98 chr1 41549921 41550028 -201114325 - MIR SINE MIR -106 156 43 2252 135 0 0 chr1 41552621 41552932 -201111421 + AluSx SINE Alu 1 311 -1 316 262 48 0 chr1 41553002 41553086 -201111267 - MIR SINE MIR -71 191 104 207 241 69 0 chr1 41553824 41553882 -201110471 - L2 LINE L2 -92 3221 3160 1038 217 18 9 chr1 41553913 41554134 -201110219 - MIR SINE MIR 0 262 40 2044 115 52 11 chr1 41554136 41554423 -201109930 - AluSx SINE Alu -9 303 5 259 309 105 20 chr1 41554971 41555123 -201109230 + MIR SINE MIR 23 187 -75 358 324 15 15 chr1 41555448 41555584 -201108769 - L2 LINE L2 0 3272 3137 565 282 68 13 chr1 41555811 41556045 -201108308 - L2 LINE L2 -417 2897 2651 296 337 6 17 chr1 41556857 41556887 -201107466 + (TG)n Simple_repeat Simple_repeat 2 31 -149 1593 123 0 0 chr1 41556887 41557099 -201107254 - AluSq SINE Alu -101 212 1 296 337 6 17 chr1 41557099 41557249 -201107104 + (TG)n Simple_repeat Simple_repeat 31 180 0 330 294 0 0 chr1 41557316 41557418 -201106935 + (TG)n Simple_repeat Simple_repeat 1 102 0 189 332 34 71 chr1 41557994 41558262 -201106091 - L2 LINE L2 -741 2573 2316 227 268 18 0 chr1 41558673 41558729 -201105624 - L2 LINE L2 -93 3179 3123 313 125 0 0 chr1 41558753 41558801 -201105552 + L2 LINE L2 3264 3311 -2 349 259 190 51 chr1 41558869 41559206 -201105147 - L2 LINE L2 -213 3059 2685 1788 130 0 87 chr1 41559309 41559631 -201104722 - AluJo SINE Alu -7 305 12 258 371 0 0 chr1 41559668 41559765 -201104588 + MIR SINE MIR 28 124 -84 870 243 65 73 chr1 41560430 41560879 -201103474 - L1ME4a LINE L1 -16 6105 5661 237 228 6 177 chr1 41560879 41561037 -201103316 - L2 LINE L2 -3 3310 3180 242 282 83 39 chr1 41561177 41561333 -201103020 - L2 LINE L2 -167 3105 2943 328 286 36 0 chr1 41561360 41561472 -201102881 - L1ME4a LINE L1 -452 5669 5554 197 273 109 0 chr1 41563545 41563600 -201100753 - MIR SINE MIR -112 150 90 2190 116 0 0 chr1 41563926 41564261 -201100092 - AluSx SINE Alu 0 312 9 269 177 165 13 chr1 41564282 41564361 -201099992 + MIR SINE MIR 79 169 -93 236 162 0 15 chr1 41564566 41564634 -201099719 + GA-rich Low_complexity Low_complexity 2 68 0 235 228 0 0 chr1 41565553 41565610 -201098743 + (TG)n Simple_repeat Simple_repeat 2 58 0 334 295 14 7 chr1 41565882 41566021 -201098332 + (TG)n Simple_repeat Simple_repeat 2 141 0 749 224 13 80 chr1 41566169 41566406 -201097947 + L2 LINE L2 3093 3313 0 2081 45 0 16 chr1 41566493 41566735 -201097618 + AluY SINE Alu 56 293 -18 411 283 23 132 chr1 41566745 41566832 -201097521 + L2 LINE L2 3078 3173 -140 2149 133 7 0 chr1 41566832 41567141 -201097212 - AluSx SINE Alu -1 311 1 411 283 23 132 chr1 41567141 41567318 -201097035 + L2 LINE L2 3173 3313 0 1967 154 0 16 chr1 41567419 41567731 -201096622 - AluSx SINE Alu -5 307 1 383 291 24 16 chr1 41568657 41568784 -201095569 + MIR SINE MIR 60 187 -75 273 266 115 9 chr1 41568812 41568925 -201095428 + L3 LINE CR1 839 963 -614 466 260 199 17 chr1 41569070 41569251 -201095102 - MIR SINE MIR -13 249 36 618 312 202 12 chr1 41569276 41569766 -201094587 + L3 LINE CR1 444 1026 -551 401 278 184 14 chr1 41570790 41571002 -201093351 - MIR SINE MIR -12 250 3 595 253 19 12 chr1 41571424 41571586 -201092767 + MIR3 SINE MIR 19 181 -27 222 353 0 0 chr1 41571649 41571717 -201092636 - MIR3 SINE MIR -6 202 135 504 312 101 76 chr1 41571769 41571878 -201092475 - L2 LINE L2 -337 2977 2872 2198 114 37 0 chr1 41571878 41572175 -201092178 + AluSx SINE Alu 1 308 -4 504 312 101 76 chr1 41572175 41572710 -201091643 - L2 LINE L2 -442 2872 2317 253 170 0 0 chr1 41572722 41572769 -201091584 - L2 LINE L2 -2 3311 3265 2131 118 6 29 chr1 41573070 41573383 -201090970 - AluSg SINE Alu -4 306 1 931 199 55 0 chr1 41573447 41573628 -201090725 - MER63A DNA MER1_type -10 200 10 656 262 29 49 chr1 41573910 41574154 -201090199 + MIR SINE MIR 17 255 -7 225 65 0 0 chr1 41574686 41574717 -201089636 + (TG)n Simple_repeat Simple_repeat 1 31 0 266 184 0 0 chr1 41574749 41574798 -201089555 + MIR SINE MIR 74 122 -140 329 307 176 29 chr1 41575195 41575508 -201088845 + MLT1K LTR MaLR 184 542 -46 243 0 0 0 chr1 41575840 41575867 -201088486 + (TA)n Simple_repeat Simple_repeat 2 28 0 319 344 87 22 chr1 41575933 41576116 -201088237 - MIR SINE MIR -60 202 8 546 319 107 30 chr1 41576201 41576955 -201087398 + L1ME4a LINE L1 4041 4904 -1242 1825 174 3 7 chr1 41576955 41577253 -201087100 - AluJb SINE Alu -15 297 1 546 319 107 30 chr1 41577253 41577577 -201086776 + L1ME4a LINE L1 4904 5202 -944 465 66 0 0 chr1 41577581 41577642 -201086711 + (TA)n Simple_repeat Simple_repeat 1 61 0 1409 294 74 34 chr1 41577665 41578489 -201085864 + L1ME4a LINE L1 5265 6121 0 408 279 101 6 chr1 41579181 41579360 -201084993 - MER117 DNA MER1_type -1 196 1 239 305 199 36 chr1 41579719 41580050 -201084303 + L3 LINE CR1 818 1202 -375 428 183 108 11 chr1 41580191 41580284 -201084069 - MER103 DNA DNA -62 104 3 381 304 83 28 chr1 41580334 41580551 -201083802 + L3 LINE CR1 1274 1502 -75 235 286 0 0 chr1 41582068 41582117 -201082236 + polypyrimidine Low_complexity Low_complexity 1 49 0 241 346 8 8 chr1 41582746 41582879 -201081474 + (TG)n Simple_repeat Simple_repeat 2 134 0 213 94 0 0 chr1 41583079 41583111 -201081242 + (TG)n Simple_repeat Simple_repeat 2 33 0 342 304 118 0 chr1 41583745 41583880 -201080473 + MIR SINE MIR 17 167 -95 2321 85 4 0 chr1 41583954 41584235 -201080118 + AluSq SINE Alu 1 282 -31 180 0 0 0 chr1 41584238 41584258 -201080095 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 569 264 21 0 chr1 41584377 41584521 -201079832 + MER117 DNA MER1_type 4 150 -47 361 269 184 0 chr1 41584567 41584708 -201079645 + MIR SINE MIR 20 186 -76 199 309 131 0 chr1 41584757 41584841 -201079512 - MIR SINE MIR -72 190 96 252 195 11 35 chr1 41586088 41586175 -201078178 + CT-rich Low_complexity Low_complexity 3 87 0 203 135 0 77 chr1 41586933 41586985 -201077368 + (TAAAAA)n Simple_repeat Simple_repeat 3 50 0 295 214 57 0 chr1 41587210 41587280 -201077073 + MIR SINE MIR 109 182 -80 2102 113 50 0 chr1 41587302 41587584 -201076769 + AluSg SINE Alu 1 296 -14 585 42 0 0 chr1 41587584 41587655 -201076698 - AluS SINE Alu -219 94 24 1618 114 0 0 chr1 41587655 41587865 -201076488 + AluSg/x SINE Alu 101 310 -2 1380 220 78 29 chr1 41587909 41588579 -201075774 + L2 LINE L2 2521 3313 0 385 120 67 0 chr1 41589401 41589476 -201074877 + MADE1 DNA Mariner 1 80 0 200 194 0 0 chr1 41589476 41589512 -201074841 + T-rich Low_complexity Low_complexity 4 39 0 429 141 74 99 chr1 41589668 41589732 -201074621 - Charlie4 DNA MER1_type -3 1958 1897 1895 155 3 38 chr1 41589732 41590049 -201074304 - AluJo SINE Alu -2 310 5 429 141 74 99 chr1 41590049 41590105 -201074248 - Charlie4 DNA MER1_type -64 1897 1841 198 222 97 14 chr1 41590343 41590415 -201073938 + L3 LINE CR1 1412 1489 -88 337 268 64 51 chr1 41590892 41591049 -201073304 - MIR3 SINE MIR -32 176 18 651 249 12 24 chr1 41592240 41592405 -201071948 + MER5B DNA MER1_type 13 175 -3 558 259 35 12 chr1 41592428 41592598 -201071755 + MER5A DNA MER1_type 10 183 -6 186 118 0 29 chr1 41592638 41592672 -201071681 + MER5A DNA MER1_type 133 165 -24 691 152 0 0 chr1 41592672 41592784 -201071569 - MER5A DNA MER1_type -77 112 1 206 240 0 40 chr1 41592801 41592876 -201071477 + GA-rich Low_complexity Low_complexity 3 74 0 242 279 13 25 chr1 41595570 41595649 -201068704 + GA-rich Low_complexity Low_complexity 6 83 0 2030 142 10 0 chr1 41595739 41596034 -201068319 + AluJo SINE Alu 1 298 -14 405 298 39 22 chr1 41597464 41597805 -201066548 - LTR33 LTR ERVL -92 429 48 276 290 153 27 chr1 41597843 41598026 -201066327 - MIR SINE MIR -1 261 56 771 215 129 0 chr1 41598839 41599025 -201065328 - MIR SINE MIR -6 256 47 416 274 127 60 chr1 41599296 41599697 -201064656 - L2 LINE L2 -460 2854 2427 1863 150 24 0 chr1 41600056 41600343 -201064010 - AluSx SINE Alu -18 294 1 639 276 33 6 chr1 41600388 41600569 -201063784 + MIR SINE MIR 11 196 -66 208 242 0 30 chr1 41601465 41601531 -201062822 + G-rich Low_complexity Low_complexity 4 67 0 636 56 83 0 chr1 41601630 41601738 -201062615 + GA-rich Low_complexity Low_complexity 1 117 0 236 29 0 29 chr1 41603532 41603566 -201060787 + (TC)n Simple_repeat Simple_repeat 1 33 0 603 322 61 37 chr1 41604462 41604788 -201059565 + L2 LINE L2 2896 3229 -43 261 321 74 43 chr1 41606722 41606884 -201057469 + MIR3 SINE MIR 17 183 -25 215 194 0 0 chr1 41606937 41606973 -201057380 + MIR SINE MIR 118 153 -109 1519 242 180 28 chr1 41608218 41608938 -201055415 + L2 LINE L2 2312 3124 -189 1106 261 78 17 chr1 41608975 41609385 -201054968 - LTR16A LTR ERVL 0 450 16 599 196 30 65 chr1 41609434 41609456 -201054897 + L2 LINE L2 3152 3173 -140 2047 129 14 0 chr1 41609456 41609755 -201054598 + AluSx SINE Alu 3 305 0 599 196 30 65 chr1 41609755 41609899 -201054454 + L2 LINE L2 3173 3313 0 636 291 16 15 chr1 41609947 41610159 -201054194 + MIR SINE MIR 49 262 0 265 254 183 67 chr1 41610518 41610786 -201053567 + L2 LINE L2 1780 2078 -1236 551 301 25 42 chr1 41610954 41611190 -201053163 + LTR16A LTR ERVL 218 449 -1 1977 291 32 15 chr1 41611194 41611847 -201052506 + HERV16 LTR ERVL 1 664 -4332 3058 69 67 9 chr1 41611858 41612238 -201052115 + MLT2A1 LTR ERVL 1 409 -35 230 56 28 0 chr1 41612238 41612274 -201052079 + (TA)n Simple_repeat Simple_repeat 2 38 0 3058 69 67 9 chr1 41612274 41612313 -201052040 + MLT2A1 LTR ERVL 409 444 0 44345 61 5 2 chr1 41612313 41617953 -201046400 + HERVL-A1-A1 LTR ERVL 1 5654 0 3110 69 46 21 chr1 41617953 41618386 -201045967 + MLT2A1 LTR ERVL 1 444 0 301 229 0 0 chr1 41618477 41618538 -201045815 + HERV16 LTR ERVL 747 807 -4189 298 328 58 52 chr1 41618965 41619273 -201045080 + LTR16A LTR ERVL 18 327 -123 685 268 68 31 chr1 41619431 41619865 -201044488 - MLT1H LTR MaLR -2 553 79 1643 253 46 0 chr1 41620326 41620717 -201043636 + MLT1I LTR MaLR 1 409 0 810 332 106 19 chr1 41621432 41622070 -201042283 + L2 LINE L2 2576 3255 -58 182 309 155 0 chr1 41622246 41622330 -201042023 - MIR SINE MIR -72 136 40 242 304 0 0 chr1 41622465 41622521 -201041832 + polypyrimidine Low_complexity Low_complexity 2 57 0 616 223 86 17 chr1 41622949 41623124 -201041229 - MLT1J2 LTR MaLR 0 450 264 2419 329 83 15 chr1 41623497 41625743 -201038610 + HERV16 LTR ERVL 1250 3662 -1926 559 285 37 37 chr1 41625836 41626131 -201038222 + HERV16 LTR ERVL 3483 3777 -1219 1798 334 44 18 chr1 41626166 41627005 -201037348 + HERV16 LTR ERVL 4168 5028 -736 687 290 42 34 chr1 41627191 41627453 -201036900 - L2 LINE L2 -540 2774 2511 300 229 33 0 chr1 41628381 41628442 -201035911 + L2 LINE L2 3242 3304 -9 904 253 34 0 chr1 41628781 41629014 -201035339 + MIR SINE MIR 12 252 -10 308 257 105 57 chr1 41629117 41629269 -201035084 - MIR3 SINE MIR -66 142 14 268 291 261 8 chr1 41629666 41629800 -201034553 + MIR3 SINE MIR 33 200 -8 1236 174 9 48 chr1 41630445 41630562 -201033791 + MER58A DNA MER1_type 4 109 -2311 2197 122 3 3 chr1 41630562 41630874 -201033479 - AluSx SINE Alu 0 312 1 1236 174 9 48 chr1 41630874 41630986 -201033367 + MER58A DNA MER1_type 109 224 0 805 266 31 18 chr1 41631079 41631308 -201033045 - MIR SINE MIR 0 262 31 318 277 180 2 chr1 41631312 41631477 -201032876 - MIR3 SINE MIR -19 189 1 288 319 71 0 chr1 41631563 41631676 -201032677 + L2 LINE L2 522 642 -2672 685 316 171 36 chr1 41631849 41632671 -201031682 + L2 LINE L2 1684 2616 -698 1120 281 90 35 chr1 41632677 41633250 -201031103 - L2 LINE L2 -1 3312 2667 2113 118 33 10 chr1 41633250 41633555 -201030798 + AluSx SINE Alu 1 312 0 1120 281 90 35 chr1 41633555 41633782 -201030571 - L2 LINE L2 -646 2667 2454 439 234 45 0 chr1 41634213 41634324 -201030029 + MIR SINE MIR 69 184 -78 1117 223 45 57 chr1 41634655 41634969 -201029384 - MER102b DNA MER1_type -25 316 7 195 184 0 0 chr1 41635231 41635269 -201029084 + (TA)n Simple_repeat Simple_repeat 2 39 0 2355 70 0 3 chr1 41635368 41635677 -201028676 + AluY SINE Alu 1 308 0 233 269 77 13 chr1 41635782 41635860 -201028493 - L2 LINE L2 -213 3059 2977 1769 191 87 3 chr1 41635921 41636313 -201028040 + MLT2B1 LTR ERVL 3 427 -93 340 243 56 12 chr1 41637068 41637159 -201027194 + L1ME4a LINE L1 5729 5818 -321 224 30 30 0 chr1 41637195 41637228 -201027125 + (CA)n Simple_repeat Simple_repeat 2 35 0 530 162 0 51 chr1 41637230 41637347 -201027006 + L1ME4a LINE L1 5964 6074 -47 202 184 0 0 chr1 41637347 41637376 -201026977 + CT-rich Low_complexity Low_complexity 4 35 -6 1935 110 99 0 chr1 41637376 41637658 -201026695 - AluSp SINE Alu -3 310 1 260 273 13 26 chr1 41638688 41638765 -201025588 + L3 LINE CR1 1176 1251 -326 909 286 86 51 chr1 41639581 41640091 -201024262 - MLT1G1 LTR MaLR 0 595 68 268 255 157 20 chr1 41640213 41640315 -201024038 - MIR SINE MIR -47 215 100 2214 106 10 7 chr1 41640352 41640655 -201023698 + AluSx SINE Alu 1 304 -8 284 286 55 0 chr1 41640695 41640786 -201023567 - MIR3 SINE MIR -15 193 98 635 228 178 18 chr1 41641123 41641342 -201023011 - MLT1L LTR MaLR -361 254 1 270 203 17 0 chr1 41641482 41641541 -201022812 + MLT1K LTR MaLR 525 584 -4 559 261 60 0 chr1 41641715 41641849 -201022504 - MER117 DNA MER1_type -50 147 6 234 319 55 0 chr1 41641877 41641968 -201022385 + MIR3 SINE MIR 98 193 -15 587 316 56 12 chr1 41642247 41642497 -201021856 + MIR SINE MIR 2 262 0 213 289 139 48 chr1 41642691 41642899 -201021454 + L3 LINE CR1 1092 1318 -259 235 241 0 0 chr1 41644325 41644383 -201019970 + (TA)n Simple_repeat Simple_repeat 1 58 0 316 279 135 9 chr1 41644640 41644751 -201019602 + L2 LINE L2 3148 3272 0 1897 94 116 4 chr1 41644878 41645154 -201019199 - AluSc SINE Alu -2 307 1 2014 75 0 0 chr1 41645231 41645472 -201018881 - AluSq SINE Alu -5 308 68 2205 89 0 0 chr1 41645529 41645798 -201018555 - AluY SINE Alu -15 296 28 1986 152 0 31 chr1 41646228 41646550 -201017803 + AluJb SINE Alu 1 312 0 1001 258 78 22 chr1 41646904 41647327 -201017026 + LTR16A LTR ERVL 2 450 0 1071 251 129 21 chr1 41647812 41647834 -201016519 + LTR33A LTR ERVL 60 78 -445 2555 140 3 3 chr1 41647834 41648198 -201016155 + THE1B LTR MaLR 1 364 0 1071 251 129 21 chr1 41648198 41648593 -201015760 + LTR33A LTR ERVL 78 522 -1 2014 122 43 0 chr1 41648811 41649089 -201015264 - AluSq SINE Alu -23 290 1 2006 115 4 0 chr1 41649172 41649441 -201014912 - AluSx SINE Alu -16 296 27 242 363 0 0 chr1 41649676 41649767 -201014586 + MIR SINE MIR 166 256 -6 1879 136 0 0 chr1 41649836 41650101 -201014252 + AluY SINE Alu 36 300 -11 693 274 83 54 chr1 41650913 41651322 -201013031 - L1MC4 LINE L1 0 8042 7507 1499 169 60 11 chr1 41651322 41651589 -201012764 + AluJo SINE Alu 27 306 -6 693 274 83 54 chr1 41651589 41651802 -201012551 - L1MC4 LINE L1 -535 7507 7302 194 372 132 0 chr1 41651898 41652027 -201012326 - MIR SINE MIR -6 256 111 253 283 117 33 chr1 41652109 41652229 -201012124 - MIR SINE MIR -61 147 18 265 244 71 9 chr1 41652571 41652676 -201011677 - MIR SINE MIR -76 132 25 1500 165 41 19 chr1 41652894 41653160 -201011193 - AluSx SINE Alu -4 308 37 318 259 92 46 chr1 41653211 41653385 -201010968 + L2 LINE L2 2557 2738 -576 258 232 0 0 chr1 41653389 41653445 -201010908 - MLT1H LTR MaLR 0 549 494 245 162 22 169 chr1 41653713 41653834 -201010519 - MLT1H1 LTR MaLR -400 149 1 323 329 57 53 chr1 41653883 41654111 -201010242 + L2 LINE L2 2828 3056 -216 437 317 39 39 chr1 41654213 41654318 -201010035 + MIR SINE MIR 14 121 -141 2052 158 0 0 chr1 41654318 41654628 -201009725 - AluJb SINE Alu -2 310 1 437 317 39 39 chr1 41654628 41654730 -201009623 + MIR SINE MIR 120 221 -41 328 318 18 0 chr1 41655758 41655868 -201008485 + GA-rich Low_complexity Low_complexity 1 112 0 619 298 6 6 chr1 41655922 41656080 -201008273 + MIR SINE MIR 7 164 -98 1576 233 82 37 chr1 41656082 41656603 -201007750 - MLT1E LTR MaLR 0 593 1 608 316 85 0 chr1 41656625 41656837 -201007516 - MIR SINE MIR -27 235 6 1970 186 27 71 chr1 41657155 41657318 -201007035 - MLT1D LTR MaLR -7 498 329 2096 143 0 0 chr1 41657318 41657619 -201006734 + AluSx SINE Alu 1 301 -11 1970 186 27 71 chr1 41657619 41657976 -201006377 - MLT1D LTR MaLR -176 329 1 218 264 38 0 chr1 41658374 41658427 -201005926 - MER91A DNA MER1_type -134 62 8 * 235 312 0 26 chr1 41658417 41658494 -201005859 + L2 LINE L2 3232 3306 -7 254 258 90 0 chr1 41659441 41659530 -201004823 + MIR SINE MIR 153 249 -13 404 277 22 36 chr1 41659544 41659681 -201004672 - MIR SINE MIR -12 250 116 187 189 27 0 chr1 41659760 41659797 -201004556 + L2 LINE L2 3269 3306 -7 1125 158 0 0 chr1 41659945 41660110 -201004243 + FRAM SINE Alu 2 166 0 357 250 89 26 chr1 41660130 41660296 -201004057 - MIR SINE MIR -65 143 11 320 293 157 14 chr1 41660358 41660498 -201003855 - MIR SINE MIR -4 258 99 469 253 100 13 chr1 41660626 41660776 -201003577 - L2 LINE L2 -213 3059 2897 691 325 135 17 chr1 41661208 41661787 -201002566 - L2 LINE L2 0 3313 2659 371 235 0 0 chr1 41663144 41663212 -201001141 + MIR SINE MIR 87 154 -108 332 296 96 0 chr1 41663636 41663751 -201000602 - L2 LINE L2 0 3313 3188 2250 116 0 28 chr1 41664269 41664589 -200999764 + AluSx SINE Alu 1 311 -1 9499 92 6 6 chr1 41666694 41666743 -200997610 + HSMAR2 DNA Mariner 2 50 -1252 1982 169 0 13 chr1 41666743 41667057 -200997296 + AluJb SINE Alu 3 312 0 9499 92 6 6 chr1 41667057 41668307 -200996046 + HSMAR2 DNA Mariner 49 1301 -1 533 184 28 0 chr1 41668374 41668483 -200995870 - MSTD LTR MaLR -11 385 274 * 1090 162 12 23 chr1 41668482 41668798 -200995555 - MSTD LTR MaLR -28 368 3 560 238 14 14 chr1 41668813 41668960 -200995393 + MER103 DNA DNA 13 159 -7 598 327 104 12 chr1 41669112 41669439 -200994914 + MLT1K LTR MaLR 71 427 -161 753 288 143 104 chr1 41669441 41670191 -200994162 - L2 LINE L2 -601 2713 1993 1101 253 19 12 chr1 41670191 41670448 -200993905 - MIR SINE MIR 0 262 4 753 288 143 104 chr1 41670448 41671970 -200992383 - L2 LINE L2 -1321 1993 87 266 246 31 0 chr1 41672074 41672139 -200992214 + Charlie8 DNA MER1_type 209 275 -2142 857 285 59 5 chr1 41672221 41672442 -200991911 + MIR SINE MIR 15 247 -15 * 934 202 49 82 chr1 41672437 41672704 -200991649 - MIR SINE MIR 0 262 5 227 273 36 0 chr1 41673596 41673651 -200990702 + L2 LINE L2 3249 3305 -8 1118 282 0 0 chr1 41673708 41673960 -200990393 - MIR SINE MIR 0 262 11 459 199 178 31 chr1 41674364 41674523 -200989830 - MIR SINE MIR -61 147 13 888 259 73 35 chr1 41676138 41676346 -200988007 + LTR16C LTR ERVL 79 278 -213 1258 205 0 0 chr1 41676346 41676570 -200987783 - MER58A DNA MER1_type 0 224 1 888 259 73 35 chr1 41676570 41676759 -200987594 + LTR16C LTR ERVL 278 491 0 251 258 15 0 chr1 41676761 41676827 -200987526 - MIR SINE MIR -114 148 82 429 228 134 0 chr1 41677137 41677264 -200987089 - MIR3 SINE MIR -23 185 42 362 333 64 19 chr1 41677392 41677548 -200986805 - MIR3 SINE MIR -3 205 43 487 297 40 28 chr1 41678179 41678393 -200985960 + MIR SINE MIR 35 256 -6 504 272 163 0 chr1 41678406 41678590 -200985763 + MIR SINE MIR 46 259 -3 2262 253 136 36 chr1 41678640 41679734 -200984619 + L2 LINE L2 2041 3270 -43 190 312 139 5 chr1 41679856 41680058 -200984295 - L2 LINE L2 -217 3055 2827 620 240 57 42 chr1 41680359 41680551 -200983802 - MIR SINE MIR -27 235 41 228 353 69 0 chr1 41681530 41681646 -200982707 + MIR SINE MIR 127 250 -12 421 304 64 16 chr1 41682062 41682241 -200982112 + MIR3 SINE MIR 17 211 -43 807 238 132 26 chr1 41682656 41682929 -200981424 + L2 LINE L2 3010 3311 -2 279 241 25 13 chr1 41682950 41683029 -200981324 - MIR SINE MIR -11 251 172 2215 114 7 10 chr1 41683212 41683518 -200980835 - AluSp SINE Alu -8 305 1 508 181 43 0 chr1 41683725 41683819 -200980534 + MIR SINE MIR 75 172 -90 543 229 0 38 chr1 41683860 41683991 -200980362 + MIR SINE MIR 49 174 -88 479 236 95 20 chr1 41684319 41684467 -200979886 - L2 LINE L2 -1 3312 3154 695 279 29 19 chr1 41684480 41684688 -200979665 - MIR SINE MIR -23 239 30 1196 252 75 80 chr1 41685419 41686070 -200978283 - MLT2F LTR ERVL -8 655 8 400 167 39 13 chr1 41686076 41686154 -200978199 + MIR3 SINE MIR 77 156 -52 246 70 14 99 chr1 41686179 41686250 -200978103 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 192 253 131 40 chr1 41686438 41686537 -200977816 + MIR SINE MIR 64 171 -91 298 344 67 18 chr1 41686738 41687020 -200977333 - L2 LINE L2 -173 3099 2804 363 318 0 0 chr1 41687441 41687548 -200976805 - MER63 DNA MER1_type -103 733 1 2446 88 0 0 chr1 41688190 41688486 -200975867 - AluSg SINE Alu -1 309 14 224 279 59 0 chr1 41688722 41688790 -200975563 + MIR SINE MIR 111 182 -80 401 344 87 18 chr1 41689082 41689300 -200975053 - L2 LINE L2 0 3272 3040 310 143 0 24 chr1 41689719 41689803 -200974550 + (TA)n Simple_repeat Simple_repeat 2 83 0 378 0 0 0 chr1 41689927 41689969 -200974384 + (CA)n Simple_repeat Simple_repeat 2 43 0 1379 138 12 29 chr1 41689972 41690010 -200974343 + MLT2B1 LTR ERVL 279 316 -204 5006 105 4 13 chr1 41690010 41690707 -200973646 + LTR8 LTR ERV1 1 691 0 1379 138 12 29 chr1 41690707 41690914 -200973439 + MLT2B1 LTR ERVL 316 520 0 2351 98 72 23 chr1 41690919 41691266 -200973087 - THE1B LTR MaLR 0 364 1 205 302 19 38 chr1 41691266 41691372 -200972981 + MIR SINE MIR 159 262 0 534 272 141 28 chr1 41691435 41691471 -200972882 - L3 LINE CR1 -3 1574 1543 1087 237 0 9 chr1 41691471 41691695 -200972658 + MER58A DNA MER1_type 2 223 -1 534 272 141 28 chr1 41691695 41691871 -200972482 - L3 LINE CR1 -34 1543 1338 225 0 0 0 chr1 41692164 41692189 -200972164 + (TG)n Simple_repeat Simple_repeat 2 26 0 344 273 32 84 chr1 41692190 41692344 -200972009 + HAL1b LINE L1 1195 1340 -8 591 307 66 25 chr1 41693949 41694193 -200970160 - MIR SINE MIR -1 261 8 466 79 16 0 chr1 41694430 41694493 -200969860 - AluSq/x SINE Alu -201 111 48 282 268 12 37 chr1 41694593 41694675 -200969678 + L2 LINE L2 2618 2697 -617 671 179 0 4 chr1 41694675 41694816 -200969537 - L1ME1 LINE L1 0 6334 6039 472 239 26 26 chr1 41694818 41694935 -200969418 + L2 LINE L2 2687 2803 -511 456 321 42 30 chr1 41694935 41695200 -200969153 + MLT1J2 LTR MaLR 1 268 -182 238 194 0 48 chr1 41695238 41695300 -200969053 + MLT1J2 LTR MaLR 388 446 -4 1746 194 95 21 chr1 41695332 41695754 -200968599 + MLT1D LTR MaLR 47 499 -6 865 249 86 69 chr1 41695760 41696122 -200968231 + L2 LINE L2 2946 3313 0 324 288 196 18 chr1 41697114 41697333 -200967020 - MIR SINE MIR 0 262 5 1615 195 13 6 chr1 41697447 41697740 -200966613 + Tigger7 DNA MER2_type 32 329 -2158 2324 112 0 0 chr1 41697740 41698043 -200966310 + AluSx SINE Alu 3 305 -7 1615 195 13 6 chr1 41698043 41698062 -200966291 + Tigger7 DNA MER2_type 329 346 -2141 729 205 27 49 chr1 41698059 41698267 -200966086 + Charlie4 DNA MER1_type 1742 1946 -15 * 1981 155 7 0 chr1 41698267 41698558 -200965795 + AluSx SINE Alu 1 293 -19 729 205 27 49 chr1 41698558 41698573 -200965780 + Charlie4 DNA MER1_type 1946 1960 -1 267 310 157 42 chr1 41698591 41698807 -200965546 + L2 LINE L2 3032 3272 0 281 291 108 27 chr1 41698876 41699024 -200965329 - MIR SINE MIR -11 251 92 1511 239 83 35 chr1 41699341 41699834 -200964519 - LTR33A LTR ERVL 0 523 7 2354 261 95 29 chr1 41700007 41700599 -200963754 + L2 LINE L2 2126 2678 -635 2099 97 16 23 chr1 41700599 41700907 -200963446 + AluSx SINE Alu 1 306 -6 2354 261 95 29 chr1 41700907 41701388 -200962965 + L2 LINE L2 2678 3267 -46 240 238 238 0 chr1 41701471 41701572 -200962781 + MLT2F LTR ERVL 38 162 -501 188 268 54 0 chr1 41701817 41701873 -200962480 + L2 LINE L2 3254 3312 -1 551 251 47 31 chr1 41702300 41702491 -200961862 - MIR SINE MIR -21 241 48 1999 123 14 3 chr1 41702634 41702919 -200961434 + AluJo SINE Alu 1 288 -24 2190 253 49 60 chr1 41702972 41703822 -200960531 + L2 LINE L2 60 900 -2414 334 349 93 19 chr1 41703884 41704205 -200960148 - HERV16 LTR ERVL -4345 651 307 2659 102 0 8 chr1 41704693 41705066 -200959287 + THE1C LTR MaLR 1 370 -5 978 265 106 9 chr1 41705537 41706022 -200958331 + L2 LINE L2 2783 3313 0 266 259 9 46 chr1 41706294 41706402 -200957951 + LTR67 LTR ERVL 441 544 -13 453 19 0 0 chr1 41707275 41707329 -200957024 + (CA)n Simple_repeat Simple_repeat 1 54 0 277 287 40 87 chr1 41707432 41707582 -200956771 + MIR SINE MIR 117 259 -3 251 308 60 8 chr1 41708122 41708255 -200956098 - L2 LINE L2 -192 3080 2941 1889 161 10 30 chr1 41708969 41709274 -200955079 - AluJo SINE Alu -13 299 1 246 296 83 15 chr1 41709909 41710041 -200954312 + MIR3 SINE MIR 18 158 -50 2245 164 45 47 chr1 41710042 41710506 -200953847 + MLT1C LTR MaLR 1 463 -4 440 249 136 19 chr1 41711126 41711305 -200953048 - MIR SINE MIR -48 214 25 722 239 142 51 chr1 41712223 41712554 -200951799 - LTR16C LTR ERVL -30 461 101 2427 109 0 0 chr1 41712687 41712999 -200951354 - AluSx SINE Alu 0 312 1 261 297 0 0 chr1 41715272 41715336 -200949017 - MIR SINE MIR -66 142 79 238 312 0 58 chr1 41716163 41716352 -200948001 + CT-rich Low_complexity Low_complexity 1 178 0 233 310 121 17 chr1 41716403 41716519 -200947834 + L2 LINE L2 2632 2759 -555 207 0 0 0 chr1 41716589 41716612 -200947741 + (TG)n Simple_repeat Simple_repeat 2 24 0 242 132 19 0 chr1 41716697 41716750 -200947603 + GA-rich Low_complexity Low_complexity 1 54 0 523 265 226 35 chr1 41717646 41718050 -200946303 - MLT1H LTR MaLR -25 524 1 231 296 0 11 chr1 41718111 41718199 -200946154 - L2 LINE L2 -2660 654 568 204 158 0 0 chr1 41718230 41718268 -200946085 + (TG)n Simple_repeat Simple_repeat 1 38 0 398 208 151 0 chr1 41718495 41718601 -200945752 - L2 LINE L2 -1 3271 3150 805 160 0 8 chr1 41718816 41718947 -200945406 - FLAM_C SINE Alu -1 132 3 22 0 0 0 chr1 41719090 41719112 -200945241 + AT_rich Low_complexity Low_complexity 1 22 0 2303 94 0 3 chr1 41719303 41719602 -200944751 - AluY SINE Alu 0 311 14 211 279 59 0 chr1 41719838 41719906 -200944447 + MIR SINE MIR 111 182 -80 358 344 87 18 chr1 41720198 41720416 -200943937 - L2 LINE L2 0 3272 3040 292 146 0 24 chr1 41720835 41720917 -200943436 + (TA)n Simple_repeat Simple_repeat 2 81 0 933 99 8 0 chr1 41720920 41721041 -200943312 - AluSq/x SINE Alu -181 132 11 535 110 0 0 chr1 41721231 41721313 -200943040 + AluSg/x SINE Alu 219 300 -12 983 254 57 7 chr1 41721557 41721934 -200942419 - LTR16A LTR ERVL -6 444 1 280 331 160 27 chr1 41721934 41722439 -200941914 - L2 LINE L2 -224 3048 2484 889 182 51 0 chr1 41722439 41722615 -200941738 - MIR SINE MIR -43 219 35 387 336 120 21 chr1 41722781 41723156 -200941197 - L2 LINE L2 -980 2334 1923 195 204 0 0 chr1 41723664 41723708 -200940645 + (CA)n Simple_repeat Simple_repeat 1 44 0 309 260 20 40 chr1 41723771 41723871 -200940482 + MIR SINE MIR 48 145 -117 790 284 9 9 chr1 41723920 41724142 -200940211 - MIR SINE MIR -21 241 20 327 302 106 63 chr1 41724593 41724848 -200939505 - L2 LINE L2 -13 3259 2994 296 360 98 19 chr1 41725063 41725327 -200939026 + L2 LINE L2 2986 3270 -2 712 254 71 10 chr1 41726352 41726549 -200937804 + MIR SINE MIR 48 256 -6 320 297 43 36 chr1 41727149 41727287 -200937066 + MIR3 SINE MIR 2 140 -68 305 218 27 9 chr1 41727692 41727802 -200936551 + CT-rich Low_complexity Low_complexity 2 113 0 339 332 92 13 chr1 41728013 41728242 -200936111 + L2 LINE L2 2807 3053 -219 347 237 21 11 chr1 41729307 41729400 -200934953 + MIR3 SINE MIR 108 201 -7 487 273 16 8 chr1 41729552 41729673 -200934680 + MIR SINE MIR 28 149 -113 208 192 58 0 chr1 41729808 41729860 -200934493 + L2 LINE L2 3213 3267 -5 2002 134 31 3 chr1 41729915 41730205 -200934148 - AluJb SINE Alu -14 298 1 339 264 33 11 chr1 41730238 41730329 -200934024 - MIR SINE MIR -76 186 94 260 279 19 97 chr1 41732081 41732235 -200932118 - MIR3 SINE MIR -53 155 14 195 196 65 0 chr1 41732376 41732422 -200931931 + MIR SINE MIR 47 95 -167 591 200 11 11 chr1 41732528 41732703 -200931650 + GA-rich Low_complexity Low_complexity 2 176 0 321 266 108 43 chr1 41733175 41733314 -200931039 - L1MCa LINE L1 -4361 2065 1918 204 175 75 85 chr1 41733683 41733775 -200930578 - MIR SINE MIR -45 163 69 * 1428 260 142 47 chr1 41733756 41734765 -200929588 - L2 LINE L2 -7 3306 2203 248 274 176 0 chr1 41735814 41735916 -200928437 + L2 LINE L2 3153 3272 0 2284 95 26 3 chr1 41736166 41736470 -200927883 - AluY SINE Alu 0 311 1 264 192 29 0 chr1 41736774 41736845 -200927508 + MIR SINE MIR 102 174 -88 207 100 0 0 chr1 41737194 41737224 -200927129 + (CAG)n Simple_repeat Simple_repeat 3 32 0 2208 88 25 0 chr1 41738505 41738788 -200925565 - AluSg SINE Alu -3 307 18 302 298 60 60 chr1 41738849 41739017 -200925336 - LTR16A1 LTR ERVL -68 389 222 507 273 47 29 chr1 41739418 41739590 -200924763 - MIR SINE MIR -40 222 48 291 326 91 0 chr1 41739755 41739887 -200924466 - MIR3 SINE MIR 0 208 65 192 97 0 0 chr1 41740252 41740283 -200924070 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2225 98 50 31 chr1 41740727 41741084 -200923269 - THE1B LTR MaLR 0 364 1 547 303 69 10 chr1 41742236 41742471 -200921882 + MIR SINE MIR 15 260 -2 434 188 0 0 chr1 41742483 41742563 -200921790 - MER116 DNA Mariner 0 80 1 607 308 119 4 chr1 41742601 41742828 -200921525 + MIR SINE MIR 5 257 -5 2553 68 0 3 chr1 41743210 41743518 -200920835 + AluY SINE Alu 1 307 -4 3388 208 62 55 chr1 41743544 41744290 -200920063 - L1ME1 LINE L1 -47 6119 5379 201 39 0 0 chr1 41744290 41744316 -200920037 + (TTG)n Simple_repeat Simple_repeat 1 26 0 3388 208 62 55 chr1 41744316 41744641 -200919712 - L1ME1 LINE L1 -787 5379 5058 2199 113 7 0 chr1 41744641 41744933 -200919420 - AluSp SINE Alu -19 294 1 3388 208 62 55 chr1 41744933 41745877 -200918476 - L1ME1 LINE L1 -1108 5058 4104 771 291 217 21 chr1 41745880 41746569 -200917784 + L2 LINE L2 2461 3303 -10 1162 204 5 5 chr1 41746677 41746893 -200917460 - AluSg/x SINE Alu -2 308 93 1797 166 7 7 chr1 41746697 41746987 -200917366 - AluJb SINE Alu -22 290 1 272 358 123 22 chr1 41746987 41747303 -200917050 + L2 LINE L2 1789 2136 -1178 448 328 0 0 chr1 41747356 41747475 -200916878 - L2 LINE L2 -5 3267 3149 331 287 148 0 chr1 41747473 41747574 -200916779 + L2 LINE L2 3198 3313 0 * 761 287 107 28 chr1 41747751 41748246 -200916107 - L2 LINE L2 -1812 1502 969 463 223 63 76 chr1 41748270 41748508 -200915845 + MLT1J LTR MaLR 72 306 -205 767 280 62 30 chr1 41748580 41748916 -200915437 - MLT1H LTR MaLR -165 384 38 2223 124 0 3 chr1 41749147 41749453 -200914900 + AluSx SINE Alu 1 305 -7 211 316 174 14 chr1 41749486 41749698 -200914655 - L2 LINE L2 -2393 921 676 195 308 115 31 chr1 41749786 41749916 -200914437 - L2 LINE L2 -2677 637 497 * 270 337 136 17 chr1 41749914 41750326 -200914027 + L2 LINE L2 2225 2685 -629 293 278 9 43 chr1 41750871 41750986 -200913367 + (CCCCAG)n Simple_repeat Simple_repeat 6 116 0 677 228 129 16 chr1 41751134 41751327 -200913026 + MER58C DNA MER1_type 1 215 0 352 298 45 7 chr1 41751765 41751911 -200912442 + MIR SINE MIR 34 185 -62 243 0 0 0 chr1 41751953 41751980 -200912373 + (A)n Simple_repeat Simple_repeat 1 27 0 189 315 96 0 chr1 41752033 41752106 -200912247 + MIR SINE MIR 21 100 -108 453 314 54 25 chr1 41753044 41753286 -200911067 - MIR SINE MIR -8 254 6 369 265 0 0 chr1 41753337 41753405 -200910948 + MIR SINE MIR 8 75 -187 911 290 90 19 chr1 41753451 41753761 -200910592 + MER115 DNA AcHobo 10 341 -352 471 234 234 23 chr1 41753781 41753956 -200910397 + MER115 DNA AcHobo 477 688 -5 760 244 83 16 chr1 41753971 41754164 -200910189 + MIR SINE MIR 36 241 -21 462 261 100 33 chr1 41754239 41754460 -200909893 + MIR SINE MIR 7 235 -27 342 239 23 0 chr1 41754606 41754694 -200909659 - MIR SINE MIR -67 141 52 224 323 226 0 chr1 41755389 41755482 -200908871 - L2 LINE L2 -15 3257 3144 1601 193 48 0 chr1 41755508 41755629 -200908724 + AluJb SINE Alu 1 115 -197 306 0 0 0 chr1 41755629 41755663 -200908690 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1601 193 48 0 chr1 41755663 41755831 -200908522 + AluJb SINE Alu 115 304 -8 560 297 178 10 chr1 41755911 41756322 -200908031 - L2 LINE L2 -584 2730 2251 231 228 18 0 chr1 41756328 41756385 -200907968 - MER5B DNA MER1_type -45 133 76 604 246 107 36 chr1 41756607 41756831 -200907522 - MIR SINE MIR -19 243 4 1678 176 3 23 chr1 41757332 41757639 -200906714 - AluJb SINE Alu -6 306 6 520 271 11 53 chr1 41757685 41757873 -200906480 + MER5A DNA MER1_type 9 188 -1 215 277 8 92 chr1 41758376 41758495 -200905858 - MIR3 SINE MIR -44 164 56 265 337 153 11 chr1 41759237 41759519 -200904834 + L2 LINE L2 2910 3231 -41 2427 145 8 18 chr1 41759570 41759964 -200904389 - MLT1B LTR MaLR 0 390 1 1293 209 187 8 chr1 41760020 41760357 -200903996 - MLT1G LTR MaLR -65 525 152 1007 149 88 176 chr1 41760376 41760541 -200903812 - MLT1A2 LTR MaLR -12 362 184 5645 99 18 6 chr1 41760541 41761330 -200903023 - L1MA2 LINE L1 0 6304 5507 1007 149 88 176 chr1 41761330 41761561 -200902792 - MLT1A2 LTR MaLR -190 184 1 229 100 0 100 chr1 41761563 41761603 -200902750 - MLT1G1 LTR MaLR -478 89 54 387 127 0 0 chr1 41761608 41761671 -200902682 + (TG)n Simple_repeat Simple_repeat 2 64 0 924 200 0 6 chr1 41761671 41761836 -200902517 - AluJo SINE Alu -148 164 1 460 206 20 39 chr1 41761839 41761941 -200902412 - MLT1G1 LTR MaLR -493 102 3 342 320 40 0 chr1 41763046 41763146 -200901207 + L2 LINE L2 3200 3303 -10 516 301 117 31 chr1 41763175 41763501 -200900852 + L2 LINE L2 2813 3166 -106 730 303 106 46 chr1 41763593 41763960 -200900393 + MLT1J2 LTR MaLR 57 445 -5 2989 175 8 4 chr1 41764349 41764818 -200899535 + MER70A LTR ERVL 2 472 0 218 261 196 33 chr1 41765213 41765305 -200899048 + L2 LINE L2 3006 3112 -160 258 319 89 19 chr1 41765314 41765471 -200898882 - LTR16C LTR ERVL -2 489 322 196 254 237 59 chr1 41765764 41765933 -200898420 + L2 LINE L2 3070 3268 -4 764 303 35 14 chr1 41766113 41766363 -200897990 - MIR SINE MIR 0 262 7 1204 285 117 8 chr1 41766641 41767146 -200897207 + L1ME4a LINE L1 5339 5898 -223 747 257 124 19 chr1 41767210 41767420 -200896933 + MIR SINE MIR 7 238 -24 270 316 164 13 chr1 41767974 41768126 -200896227 - MIR3 SINE MIR -3 205 31 2375 89 3 16 chr1 41768225 41768541 -200895812 - AluSx SINE Alu 0 312 1 328 293 233 0 chr1 41768552 41768702 -200895651 + L3 LINE CR1 1381 1565 -12 2981 150 59 19 chr1 41768755 41769334 -200895019 + Tigger7 DNA MER2_type 1 2487 0 659 282 101 23 chr1 41769604 41770064 -200894289 - L1MC4 LINE L1 -497 5665 5413 657 255 47 47 chr1 41770129 41770384 -200893969 - L1MC4 LINE L1 -2052 4094 3840 24 0 0 0 chr1 41770401 41770425 -200893928 + AT_rich Low_complexity Low_complexity 1 24 0 534 288 111 20 chr1 41770645 41771087 -200893266 - L1ME3A LINE L1 -303 5818 5360 204 179 26 0 chr1 41771087 41771126 -200893227 + (TA)n Simple_repeat Simple_repeat 2 41 0 231 202 119 48 chr1 41771157 41771241 -200893112 + L1MC4 LINE L1 6614 6703 -1339 5205 142 20 35 chr1 41771335 41772558 -200891795 + L1MA7 LINE L1 4988 6192 -99 285 167 90 13 chr1 41772561 41772639 -200891714 - L1ME3A LINE L1 -874 5272 5189 * 472 263 53 57 chr1 41772635 41772844 -200891509 - L1ME3A LINE L1 -1 6169 5962 1259 278 46 8 chr1 41772898 41773287 -200891066 - L1ME3A LINE L1 -208 5962 5559 610 275 91 28 chr1 41773287 41773651 -200890702 - L1ME3A LINE L1 -935 5211 4825 718 274 87 18 chr1 41773678 41774175 -200890178 - L1ME3A LINE L1 -2659 3487 2957 489 281 27 67 chr1 41774474 41774632 -200889721 - L1ME3A LINE L1 -3417 2729 2566 2098 132 0 7 chr1 41774632 41774935 -200889418 - AluSx SINE Alu -11 301 1 489 281 27 67 chr1 41774935 41775295 -200889058 - L1ME3A LINE L1 -3580 2566 2232 235 229 0 0 chr1 41775924 41775972 -200888381 + T-rich Low_complexity Low_complexity 4 51 0 1532 162 208 105 chr1 41776406 41776916 -200887437 - L1MD3 LINE L1 -2 7993 7537 354 277 0 0 chr1 41776916 41777010 -200887343 - MLT1F1 LTR MaLR -439 128 35 1532 162 208 105 chr1 41777010 41777437 -200886916 - L1MD3 LINE L1 -458 7537 6605 1850 168 11 0 chr1 41777441 41777726 -200886627 + AluJb SINE Alu 1 288 -24 1510 203 49 115 chr1 41777749 41778296 -200886057 - MLT2B1 LTR ERVL 0 520 10 6048 133 17 24 chr1 41778317 41779860 -200884493 + L1PA16 LINE L1 4625 6145 -21 1910 182 94 7 chr1 41779897 41780331 -200884022 - L1MC3 LINE L1 -1181 7022 6551 1154 83 0 6 chr1 41780331 41780511 -200883842 + AluY SINE Alu 127 305 0 10132 200 36 34 chr1 41780511 41781568 -200882785 - L1MC3 LINE L1 -743 5821 4767 5015 168 48 14 chr1 41781568 41782403 -200881950 + MER21B LTR ERV1 1 863 0 10132 200 36 34 chr1 41782403 41785077 -200879276 - L1MC3 LINE L1 -1797 4767 2825 3994 223 111 76 chr1 41785046 41785141 -200879212 - L1MC3 LINE L1 -4103 2461 2371 * 2364 88 0 0 chr1 41785141 41785435 -200878918 + AluSq SINE Alu 1 294 -19 3994 223 111 76 chr1 41785435 41785585 -200878768 - L1MC3 LINE L1 -4193 2371 2228 1928 168 44 14 chr1 41785585 41785949 -200878404 - THE1C LTR MaLR 0 375 1 3994 223 111 76 chr1 41785949 41788025 -200876328 - L1MC3 LINE L1 -4336 2228 1 446 314 103 28 chr1 41788042 41788548 -200875805 - HAL1 LINE L1 -851 1656 1113 185 328 251 0 chr1 41788575 41788746 -200875607 - L3 LINE CR1 -160 1417 1204 357 361 111 38 chr1 41789195 41789679 -200874674 - L2 LINE L2 -63 3209 2698 449 305 88 29 chr1 41789742 41790014 -200874339 - L2 LINE L2 -811 2503 2216 776 229 112 142 chr1 41790559 41791002 -200873351 + MLT1H LTR MaLR 1 425 -124 1972 122 72 0 chr1 41791002 41791281 -200873072 + AluSx SINE Alu 1 299 -13 776 229 112 142 chr1 41791281 41791401 -200872952 + MLT1H LTR MaLR 425 547 -2 2006 172 26 3 chr1 41791847 41792190 -200872163 - MLT1B LTR MaLR -39 351 1 447 242 60 38 chr1 41792648 41792811 -200871542 + MIR SINE MIR 1 179 -60 180 77 0 0 chr1 41795239 41795265 -200869088 + (CA)n Simple_repeat Simple_repeat 1 26 0 225 292 118 35 chr1 41795466 41795610 -200868743 - MIR3 SINE MIR -20 188 33 2864 7 0 0 chr1 41795649 41795955 -200868398 + AluYb8 SINE Alu 1 306 -12 239 190 0 69 chr1 41796153 41796211 -200868142 - MIR3 SINE MIR -53 155 102 1753 208 64 33 chr1 41796600 41797019 -200867334 - MER63B DNA MER1_type 0 436 5 456 267 17 72 chr1 41797032 41797078 -200867275 - MIR SINE MIR -73 189 142 2221 80 11 3 chr1 41797078 41797365 -200866988 - AluSq SINE Alu -24 289 1 456 267 17 72 chr1 41797365 41797498 -200866855 - MIR SINE MIR -120 142 20 491 299 108 26 chr1 41797722 41797916 -200866437 + MIR SINE MIR 47 256 -6 741 324 156 36 chr1 41798625 41799803 -200864550 + L2 LINE L2 1596 2914 -400 454 254 16 40 chr1 41799817 41799943 -200864410 + L2 LINE L2 3191 3313 0 241 273 15 15 chr1 41800099 41800165 -200864188 + L2 LINE L2 3204 3269 -3 187 271 204 41 chr1 41801357 41801700 -200862653 + L2 LINE L2 1488 1886 -1428 233 292 14 0 chr1 41803598 41803670 -200860683 - MIR3 SINE MIR -22 186 114 497 251 144 6 chr1 41804147 41804314 -200860039 + Charlie8 DNA MER1_type 56 245 -2172 365 386 59 15 chr1 41804671 41805008 -200859345 + L2 LINE L2 2625 2976 -338 709 304 152 37 chr1 41805025 41805427 -200858926 + L2 LINE L2 2862 3309 -4 215 354 24 0 chr1 41805430 41805512 -200858841 - MIR3 SINE MIR -10 198 115 395 261 198 14 chr1 41805543 41805760 -200858593 + L1MC/D LINE L1 5354 5614 -813 425 274 51 71 chr1 41805834 41806031 -200858322 - L2 LINE L2 -1 3312 3120 234 250 104 21 chr1 41806206 41806302 -200858051 - L2 LINE L2 -88 3225 3122 205 290 188 0 chr1 41806463 41806532 -200857821 - L2 LINE L2 -5 3308 3227 591 85 0 0 chr1 41806537 41806619 -200857734 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 1565 146 12 0 chr1 41806644 41806891 -200857462 - L1PB2 LINE L1 0 6151 5902 814 270 123 29 chr1 41806893 41807066 -200857287 - L2 LINE L2 -92 3221 3066 2159 101 3 0 chr1 41807066 41807363 -200856990 + AluSc SINE Alu 1 298 -11 814 270 123 29 chr1 41807363 41807571 -200856782 - L2 LINE L2 -247 3066 2804 255 294 106 31 chr1 41808150 41808310 -200856043 + L2 LINE L2 2920 3091 -181 2082 226 40 18 chr1 41808705 41809209 -200855144 - LTR40a LTR ERVL 0 519 5 1341 201 272 18 chr1 41809345 41809783 -200854570 - MLT1H LTR MaLR 0 549 1 278 354 71 0 chr1 41809783 41809910 -200854443 + L2 LINE L2 3137 3272 0 250 322 80 45 chr1 41810060 41810346 -200854007 + L2 LINE L2 2553 2848 -466 408 67 0 0 chr1 41810625 41810685 -200853668 + (GA)n Simple_repeat Simple_repeat 2 61 0 251 189 21 21 chr1 41810674 41810769 -200853584 + GA-rich Low_complexity Low_complexity 2 96 0 * 356 228 87 60 chr1 41811128 41811277 -200853076 - L1ME4a LINE L1 -19 6102 5950 941 184 60 72 chr1 41811804 41812147 -200852206 - MSTC LTR MaLR -38 388 4 373 257 50 21 chr1 41812157 41812297 -200852056 - L1ME4a LINE L1 -340 5822 5679 237 299 94 24 chr1 41812439 41812566 -200851787 + MLT1K LTR MaLR 69 204 -384 544 261 108 26 chr1 41813461 41813656 -200850697 - MIR SINE MIR -6 256 46 1836 190 75 13 chr1 41813905 41814278 -200850075 - MSTD LTR MaLR 0 396 1 333 351 26 13 chr1 41814337 41814491 -200849862 - MIR SINE MIR -79 183 28 411 167 0 0 chr1 41814784 41814850 -200849503 + MER94 DNA DNA 66 131 -3 568 298 110 4 chr1 41814863 41815118 -200849235 + L2 LINE L2 2807 3088 -225 925 264 89 44 chr1 41815125 41815621 -200848732 - MLT1F1 LTR MaLR 0 567 50 269 245 113 86 chr1 41815658 41815809 -200848544 + L2 LINE L2 3159 3313 0 1296 179 44 88 chr1 41816282 41816601 -200847752 - MLT2D LTR ERVL -8 406 102 2302 143 70 5 chr1 41816688 41817088 -200847265 - MSTA LTR MaLR -2 426 1 2179 119 21 58 chr1 41819525 41819686 -200844667 + THE1B LTR MaLR 1 166 -198 1958 106 3 64 chr1 41819686 41820015 -200844338 - AluSp SINE Alu -4 309 1 2179 119 21 58 chr1 41820015 41820231 -200844122 + THE1B LTR MaLR 166 364 0 356 320 8 0 chr1 41820556 41820684 -200843669 + MER94 DNA DNA 6 134 0 23 0 0 0 chr1 41821394 41821417 -200842936 + AT_rich Low_complexity Low_complexity 1 23 0 1881 192 96 193 chr1 41821423 41821932 -200842421 - L1ME2 LINE L1 -9 6155 5643 904 153 0 7 chr1 41821932 41822076 -200842277 + FRAM SINE Alu 10 152 -24 1881 192 96 193 chr1 41822076 41822427 -200841926 - L1ME2 LINE L1 -521 5643 5259 1531 194 26 23 chr1 41822441 41822792 -200841561 - L1ME2 LINE L1 -1090 5056 4705 415 302 113 24 chr1 41823565 41823778 -200840575 + MIR SINE MIR 32 262 0 1610 228 92 34 chr1 41823854 41824324 -200840029 - MLT1D LTR MaLR 0 505 9 216 260 0 0 chr1 41824327 41824377 -200839976 + (TG)n Simple_repeat Simple_repeat 1 50 0 294 209 151 12 chr1 41824538 41824624 -200839729 + MER58B DNA MER1_type 1 98 -243 * 458 188 24 0 chr1 41824591 41824676 -200839677 + MER58B DNA MER1_type 248 334 -7 368 276 58 45 chr1 41824685 41824841 -200839512 - MIR3 SINE MIR -50 158 1 223 75 125 0 chr1 41824949 41824989 -200839364 + L3 LINE CR1 1444 1488 -89 654 238 83 32 chr1 41825956 41826180 -200838173 - MIR SINE MIR -1 261 22 567 266 19 19 chr1 41826270 41826424 -200837929 + MER5B DNA MER1_type 1 154 -24 2640 126 0 0 chr1 41826496 41826860 -200837493 - THE1B LTR MaLR 0 364 1 226 301 19 29 chr1 41827054 41827157 -200837196 - L2 LINE L2 -264 3008 2907 2078 239 114 0 chr1 41827158 41827631 -200836722 + MLT1E LTR MaLR 3 529 -64 945 140 0 0 chr1 41827637 41827780 -200836573 - FLAM_C SINE Alu 0 143 1 342 191 0 0 chr1 41827780 41827843 -200836510 + MLT1E LTR MaLR 592 654 0 2482 177 135 43 chr1 41827846 41828571 -200835782 + LTR48 LTR ERV1 3 707 0 421 311 108 36 chr1 41828696 41828973 -200835380 - L2 LINE L2 -480 2834 2538 306 351 75 25 chr1 41829620 41829899 -200834454 - L2 LINE L2 -350 2964 2672 230 139 0 0 chr1 41830105 41830141 -200834212 - L1MA9 LINE L1 -2 6310 6275 7546 244 99 35 chr1 41830145 41832900 -200831453 - L1M4 LINE L1 -1031 5115 2183 216 247 59 47 chr1 41832900 41832985 -200831368 + MIR3 SINE MIR 116 201 -7 387 242 32 0 chr1 41833481 41833576 -200830777 - MIR SINE MIR -77 185 88 236 247 134 76 chr1 41833639 41833677 -200830676 + MLT1L LTR MaLR 8 42 -573 2115 126 0 0 chr1 41833677 41833979 -200830374 - AluSx SINE Alu -10 302 1 236 247 134 76 chr1 41833979 41834163 -200830190 + MLT1L LTR MaLR 42 243 -372 473 258 59 50 chr1 41834249 41834470 -200829883 + MLT1L LTR MaLR 388 610 -5 393 318 0 23 chr1 41834591 41834720 -200829633 - MIR SINE MIR -62 146 21 1909 141 7 3 chr1 41835526 41835825 -200828528 - AluJo SINE Alu -8 304 5 695 266 16 47 chr1 41836259 41836451 -200827902 - MER91A DNA MER1_type 0 196 11 1426 259 58 52 chr1 41836685 41837017 -200827336 - L2 LINE L2 -352 2962 2624 4206 161 44 9 chr1 41837017 41837770 -200826583 - MER4E LTR ERV1 0 779 1 1426 259 58 52 chr1 41837770 41837970 -200826383 - L2 LINE L2 -690 2624 2427 294 106 0 0 chr1 41838214 41838261 -200826092 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 355 42 21 0 chr1 41838271 41838319 -200826034 + MADE1 DNA Mariner 32 80 0 365 281 21 10 chr1 41838319 41838415 -200825938 - L2 LINE L2 -18 3295 3199 1521 195 90 153 chr1 41838979 41839738 -200824615 - LTR8A LTR ERV1 -16 711 1 193 226 174 61 chr1 41840196 41840311 -200824042 - MIR SINE MIR -28 234 107 671 263 72 10 chr1 41840338 41840547 -200823806 + MIR SINE MIR 31 252 -10 301 203 31 0 chr1 41840687 41840751 -200823602 + MER53 DNA DNA 2 67 -122 29 28 0 0 chr1 41890891 41890927 -200773426 + AT_rich Low_complexity Low_complexity 1 36 0 3666 205 7 62 chr1 41891704 41893030 -200771323 - L1MB8 LINE L1 -25 6153 4903 2431 89 0 3 chr1 41893030 41893334 -200771019 + AluSc SINE Alu 1 303 -6 3666 205 7 62 chr1 41893334 41893381 -200770972 - L1MB8 LINE L1 -1275 4903 4855 1003 232 19 0 chr1 41893554 41893765 -200770588 + MIR SINE MIR 25 239 -23 2204 108 16 16 chr1 41894618 41894924 -200769429 + AluSx SINE Alu 1 306 -6 210 214 143 0 chr1 41895602 41895672 -200768681 + MIR SINE MIR 20 99 -163 1813 233 65 31 chr1 41895723 41896265 -200768088 + MLT1F1 LTR MaLR 1 566 -1 220 361 76 0 chr1 41899051 41899170 -200765183 - L2 LINE L2 0 3272 3145 789 266 34 8 chr1 41899195 41899432 -200764921 - MIR SINE MIR 0 262 20 611 246 35 0 chr1 41900072 41900214 -200764139 + MIR SINE MIR 43 189 -73 635 169 253 0 chr1 41900719 41900885 -200763468 - L1ME4a LINE L1 -33 6088 5881 2070 133 0 10 chr1 41901351 41901644 -200762709 + AluSx SINE Alu 3 292 -20 714 259 63 17 chr1 41901700 41901939 -200762414 + MIR SINE MIR 13 262 0 332 270 11 11 chr1 41901964 41902053 -200762300 + MER112 DNA MER1_type 1 89 -171 225 65 0 0 chr1 41902085 41902116 -200762237 + (CA)n Simple_repeat Simple_repeat 2 32 0 373 281 52 0 chr1 41902218 41902314 -200762039 + MER112 DNA MER1_type 159 259 -1 327 283 14 65 chr1 41902319 41902457 -200761896 + MIR SINE MIR 20 150 -112 201 307 91 0 chr1 41902972 41903060 -200761293 - MIR SINE MIR -55 153 58 714 279 36 23 chr1 41903281 41903500 -200760853 - MIR SINE MIR -23 239 18 199 228 99 99 chr1 41903733 41903755 -200760598 - L2 LINE L2 -3 3269 3248 2242 127 0 16 chr1 41903755 41904070 -200760283 - AluSx SINE Alu -2 310 1 199 228 99 99 chr1 41904070 41904148 -200760205 - L2 LINE L2 -23 3249 3169 1576 200 106 6 chr1 41904277 41904637 -200759716 + MSTD LTR MaLR 1 396 0 205 351 0 27 chr1 41904668 41904742 -200759611 - MIR SINE MIR -187 75 4 372 249 196 87 chr1 41905073 41905302 -200759051 + MLT1K LTR MaLR 335 588 0 705 255 76 66 chr1 41905638 41905860 -200758493 + L1ME4a LINE L1 5409 5627 -494 2080 116 0 44 chr1 41905860 41906178 -200758175 + AluSq SINE Alu 5 308 -5 705 255 76 66 chr1 41906178 41906462 -200757891 + L1ME4a LINE L1 5627 5914 -207 2221 133 40 0 chr1 41906462 41906809 -200757544 + MER46B DNA MER2_type 1 236 0 705 255 76 66 chr1 41906809 41906861 -200757492 + L1ME4a LINE L1 5914 5964 -157 251 158 53 45 chr1 41906861 41906994 -200757359 + (TATAA)n Simple_repeat Simple_repeat 1 134 0 21 89 0 0 chr1 41907451 41907507 -200756846 + AT_rich Low_complexity Low_complexity 1 56 0 360 0 0 0 chr1 41907852 41907892 -200756461 + (TG)n Simple_repeat Simple_repeat 1 40 0 351 196 0 69 chr1 41907903 41908005 -200756348 + L1ME4a LINE L1 5990 6084 -37 790 252 9 37 chr1 41908953 41909167 -200755186 - MIR SINE MIR -31 231 24 281 268 10 41 chr1 41909216 41909313 -200755040 - MIR SINE MIR -96 112 19 588 326 61 35 chr1 41909467 41909989 -200754364 + L3 LINE CR1 805 1340 -237 471 279 169 10 chr1 41910040 41910241 -200754112 + MIR SINE MIR 18 250 -12 2417 111 24 11 chr1 41911342 41911712 -200752641 + THE1C LTR MaLR 1 375 0 1852 191 113 53 chr1 41911742 41911816 -200752537 + MLT2B1 LTR ERVL 1 69 -451 414 0 0 0 chr1 41911816 41911862 -200752491 + (TG)n Simple_repeat Simple_repeat 2 47 0 1852 191 113 53 chr1 41911862 41912274 -200752079 + MLT2B1 LTR ERVL 69 516 -4 393 22 0 0 chr1 41912559 41912605 -200751748 + (TG)n Simple_repeat Simple_repeat 2 47 0 400 302 23 35 chr1 41914087 41914259 -200750094 + MIR SINE MIR 20 189 -73 255 79 0 0 chr1 41914644 41914682 -200749671 + (CA)n Simple_repeat Simple_repeat 2 39 0 801 302 39 49 chr1 41914908 41915319 -200749034 + MLT1I LTR MaLR 1 407 -2 564 255 19 12 chr1 41916450 41916611 -200747742 + MIR SINE MIR 96 257 -5 335 364 0 14 chr1 41916669 41916809 -200747544 - MIR SINE MIR -105 157 20 415 215 81 29 chr1 41916951 41917087 -200747266 + MIR SINE MIR 74 251 -11 414 154 0 0 chr1 41917089 41917167 -200747186 + (ATG)n Simple_repeat Simple_repeat 1 78 0 236 284 74 0 chr1 41918048 41918143 -200746210 - L2 LINE L2 -20 3252 3151 1054 275 145 36 chr1 41918535 41919390 -200744963 - L2 LINE L2 -259 3054 2118 519 216 24 0 chr1 41920241 41920366 -200743987 + MIR3 SINE MIR 81 208 0 1064 196 39 20 chr1 41920487 41920691 -200743662 + MER63A DNA MER1_type 2 209 -1 444 234 89 0 chr1 41920879 41921003 -200743350 + MIR SINE MIR 36 170 -92 640 215 106 28 chr1 41921003 41921306 -200743047 - MLT1B LTR MaLR 0 390 1 257 175 200 25 chr1 41921306 41921386 -200742967 + MIR SINE MIR 166 259 -3 2274 114 10 0 chr1 41922284 41922591 -200741762 - AluSg SINE Alu 0 310 1 4911 159 17 8 chr1 41922700 41923560 -200740793 + L1MB5 LINE L1 5284 6151 -23 339 271 0 51 chr1 41923751 41923869 -200740484 - MIR SINE MIR -34 228 117 182 175 250 50 chr1 41924421 41924501 -200739852 + MIR3 SINE MIR 106 201 -7 231 154 0 39 chr1 41924686 41924738 -200739615 + GA-rich Low_complexity Low_complexity 2 51 0 457 249 171 28 chr1 41924738 41924955 -200739398 + MIR SINE MIR 13 260 -2 214 225 99 80 chr1 41925586 41925737 -200738616 + L2 LINE L2 3160 3313 0 183 222 0 0 chr1 41926658 41926703 -200737650 + C-rich Low_complexity Low_complexity 3 47 0 282 294 144 20 chr1 41927436 41927582 -200736771 - MIR SINE MIR -84 178 15 258 182 23 68 chr1 41927604 41927692 -200736661 - MIR SINE MIR -65 143 60 2346 47 43 0 chr1 41927909 41928187 -200736166 - AluY SINE Alu -21 290 1 621 226 48 7 chr1 41928419 41928565 -200735788 - MER3 DNA MER1_type -57 152 1 341 332 99 43 chr1 41928571 41928803 -200735550 + L2 LINE L2 2986 3230 -42 778 283 77 25 chr1 41929158 41929444 -200734909 - L3 LINE CR1 -3 1574 1274 370 254 149 0 chr1 41929878 41929916 -200734437 - MIR SINE MIR 0 262 231 270 0 0 0 chr1 41929916 41929946 -200734407 + (TA)n Simple_repeat Simple_repeat 2 31 0 370 254 149 0 chr1 41929946 41930041 -200734312 - MIR SINE MIR -31 231 109 288 312 41 14 chr1 41930177 41930336 -200734017 - MIR SINE MIR -66 142 22 841 275 202 5 chr1 41931026 41931452 -200732901 - L2 LINE L2 0 3313 2804 2177 116 3 3 chr1 41931945 41932247 -200732106 + AluSx SINE Alu 1 302 -10 3225 181 41 6 chr1 41932764 41932786 -200731567 - L1MB7 LINE L1 -24 6147 6127 2276 123 19 45 chr1 41932786 41933160 -200731193 + THE1B LTR MaLR 1 364 0 3225 181 41 6 chr1 41933160 41934388 -200729965 - L1MB7 LINE L1 -44 6127 4841 180 261 0 0 chr1 41934466 41934512 -200729841 + L2 LINE L2 3249 3294 -19 447 261 70 65 chr1 41938923 41939138 -200725215 + L3 LINE CR1 1246 1461 -116 5048 157 45 17 chr1 41939286 41940795 -200723558 - L1MB3 LINE L1 -1 6182 4642 1879 100 111 7 chr1 41941168 41941345 -200723008 - AluSg SINE Alu -1 309 91 198 0 0 0 chr1 41941345 41941367 -200722986 + (TG)n Simple_repeat Simple_repeat 1 22 0 1879 100 111 7 chr1 41941367 41941469 -200722884 - AluSg SINE Alu -219 91 1 478 262 111 38 chr1 41941516 41941860 -200722493 - L2 LINE L2 -1 3312 2944 294 295 45 26 chr1 41942357 41942513 -200721840 + L1ME4a LINE L1 5729 5887 -234 7665 38 0 0 chr1 41942669 41943610 -200720743 + L1PA4 LINE L1 5214 6154 -1 2762 138 41 19 chr1 41943947 41944433 -200719920 - L1MB2 LINE L1 -2 6169 5673 1020 110 7 0 chr1 41944720 41944856 -200719497 + AluSq/x SINE Alu 1 137 -176 2276 99 3 0 chr1 41944856 41945180 -200719173 + AluSx SINE Alu 1 325 0 770 302 69 42 chr1 41945737 41946060 -200718293 - L2 LINE L2 -2 3311 2998 2273 120 0 0 chr1 41946060 41946369 -200717984 + AluSx SINE Alu 1 309 -3 770 302 69 42 chr1 41946369 41946698 -200717655 - L2 LINE L2 -315 2998 2642 213 345 68 0 chr1 41946850 41946998 -200717355 - MER5B DNA MER1_type 0 178 21 2292 117 0 0 chr1 41947058 41947367 -200716986 + AluSc SINE Alu 1 309 0 1678 194 19 62 chr1 41949200 41949571 -200714782 - MLT1B LTR MaLR -35 355 1 276 211 53 0 chr1 41949653 41949710 -200714643 + MIR SINE MIR 128 187 -75 386 224 0 0 chr1 41950132 41950208 -200714145 + MER116 DNA Mariner 1 76 -4 804 134 0 0 chr1 41951576 41951688 -200712665 - AluSq/x SINE Alu -196 117 6 849 161 0 19 chr1 41951734 41951889 -200712464 + FRAM SINE Alu 11 162 -14 1656 166 34 3 chr1 41951956 41952251 -200712102 + AluJb SINE Alu 1 304 -8 480 123 0 0 chr1 41952378 41952443 -200711910 + AluS SINE Alu 2 66 -245 204 40 0 0 chr1 41952443 41952468 -200711885 + (A)n Simple_repeat Simple_repeat 1 25 0 318 303 219 7 chr1 41952659 41952814 -200711539 - MIR3 SINE MIR -7 201 14 2118 120 130 38 chr1 41953991 41954343 -200710010 + MSTA LTR MaLR 1 394 -34 2131 117 0 16 chr1 41954343 41954659 -200709694 - AluSx SINE Alu -1 311 1 2118 120 130 38 chr1 41954659 41954698 -200709655 + MSTA LTR MaLR 394 428 0 214 348 22 0 chr1 41955667 41955759 -200708594 - L2 LINE L2 -1162 2152 2059 2074 157 91 85 chr1 41956234 41956751 -200707602 + MLT2B1 LTR ERVL 1 520 0 210 105 0 0 chr1 41958147 41958185 -200706168 + (A)n Simple_repeat Simple_repeat 1 38 0 324 0 0 0 chr1 41959854 41959890 -200704463 + (CA)n Simple_repeat Simple_repeat 1 36 0 215 250 0 0 chr1 41960252 41960300 -200704053 - L2 LINE L2 -16 3297 3250 * 634 269 31 6 chr1 41960297 41960457 -200703896 - MIR SINE MIR -93 169 6 478 317 103 63 chr1 41960647 41961092 -200703261 + L2 LINE L2 2806 3268 -4 489 268 25 104 chr1 41961279 41961559 -200702794 + L2 LINE L2 3055 3312 -1 1725 210 48 46 chr1 41961971 41962428 -200701925 - MLT1C LTR MaLR -9 458 1 204 119 95 0 chr1 41962449 41962491 -200701862 - L2 LINE L2 -9 3263 3218 405 382 116 6 chr1 41962939 41963258 -200701095 + L2 LINE L2 2902 3255 -17 241 313 69 23 chr1 41963230 41963361 -200700992 - L2 LINE L2 -590 2724 2588 * 211 303 0 15 chr1 41964425 41964491 -200699862 + CT-rich Low_complexity Low_complexity 4 68 0 260 274 155 34 chr1 41964888 41965070 -200699283 - MIR SINE MIR -50 212 9 833 306 31 58 chr1 41965707 41965998 -200698355 - L2 LINE L2 0 3272 2990 1063 184 11 5 chr1 41967750 41967935 -200696418 - MER5A DNA MER1_type 0 189 4 2154 80 0 0 chr1 41968081 41968356 -200695997 + AluSq SINE Alu 13 287 -26 272 275 235 13 chr1 41968754 41968903 -200695450 + MIR3 SINE MIR 16 197 -11 300 233 113 60 chr1 41969684 41969834 -200694519 + L1ME4a LINE L1 5960 6117 -4 329 256 178 0 chr1 41970795 41970885 -200693468 - L2 LINE L2 -4 3309 3204 * 332 362 0 0 chr1 41970883 41970999 -200693354 - MIR3 SINE MIR -16 192 77 341 296 104 85 chr1 41971055 41971315 -200693038 + L2 LINE L2 2959 3223 -49 691 284 58 9 chr1 41971323 41971548 -200692805 - MIR SINE MIR -7 255 20 399 250 0 0 chr1 41971565 41971637 -200692716 + L2 LINE L2 3161 3232 -40 387 297 9 9 chr1 41971643 41971754 -200692599 - MLT1F LTR MaLR -429 113 3 196 236 0 36 chr1 41973527 41973582 -200690771 + L2 LINE L2 2904 2956 -316 1028 59 0 52 chr1 41973861 41974035 -200690318 + AluY SINE Alu 155 311 0 368 303 28 21 chr1 41974049 41974194 -200690159 - MIR3 SINE MIR -3 205 60 356 212 203 17 chr1 41974425 41974543 -200689810 - MIR SINE MIR -46 216 77 193 238 48 0 chr1 41974608 41974650 -200689703 - MIR SINE MIR -123 85 42 1918 154 3 3 chr1 41974654 41974965 -200689388 - AluJb SINE Alu -1 311 1 556 214 0 0 chr1 41975249 41975375 -200688978 - L1M4 LINE L1 -1057 5089 4964 266 236 0 0 chr1 41975391 41975446 -200688907 + MLT1C LTR MaLR 413 467 0 3054 194 2 11 chr1 41975614 41976239 -200688114 - L1M4 LINE L1 -3177 2969 2351 240 111 0 0 chr1 41976421 41976457 -200687896 + (A)n Simple_repeat Simple_repeat 1 36 0 1760 188 93 19 chr1 41978123 41978553 -200685800 - MLT1C LTR MaLR 0 467 6 287 376 23 35 chr1 41978778 41978951 -200685402 - MIR SINE MIR -70 192 22 343 306 37 46 chr1 41979092 41979200 -200685153 - L2 LINE L2 -50 3222 3116 621 217 58 116 chr1 41979361 41979583 -200684770 + L1MC4 LINE L1 7687 7880 -162 198 103 0 0 chr1 41979583 41979612 -200684741 + (TG)n Simple_repeat Simple_repeat 2 30 0 621 217 58 116 chr1 41979612 41979767 -200684586 + L1MC4 LINE L1 7880 8042 0 250 255 202 45 chr1 41979971 41980214 -200684139 - L2 LINE L2 -284 2988 2721 314 291 111 60 chr1 41980961 41981186 -200683167 - L2 LINE L2 -906 2408 2161 2391 49 0 0 chr1 41981186 41981474 -200682879 + AluY SINE Alu 21 308 -3 314 291 111 60 chr1 41981474 41981564 -200682789 - L2 LINE L2 -1153 2161 2077 760 267 63 121 chr1 41982241 41982706 -200681647 + MLT1J LTR MaLR 1 433 -78 2199 103 7 0 chr1 41982706 41983007 -200681346 - AluSg1 SINE Alu -6 303 1 760 267 63 121 chr1 41983007 41983077 -200681276 + MLT1J LTR MaLR 433 505 -6 261 340 54 14 chr1 41983090 41983237 -200681116 - L2 LINE L2 -336 2977 2825 2348 171 17 12 chr1 41983370 41983784 -200680569 + MER47B DNA MER2_type 3 418 0 204 361 41 33 chr1 41984047 41984169 -200680184 + L2 LINE L2 3179 3301 -12 282 287 107 33 chr1 41986159 41986281 -200678072 - MIR SINE MIR -51 211 81 1266 148 14 31 chr1 41986378 41986601 -200677752 - MER20 DNA MER1_type 0 219 1 262 304 185 22 chr1 41987012 41987147 -200677206 + MIR SINE MIR 56 212 -50 2067 113 0 0 chr1 41987217 41987545 -200676808 - AluSx SINE Alu 0 328 1 587 271 149 61 chr1 41987574 41988259 -200676094 + L1MC4a LINE L1 5317 6061 -1747 367 295 64 52 chr1 41989124 41989299 -200675054 - MIR SINE MIR -56 206 30 1914 151 0 7 chr1 41989713 41990018 -200674335 + AluY SINE Alu 1 303 -8 1546 239 68 7 chr1 41990079 41990518 -200673835 - MLT1C LTR MaLR 0 467 2 225 0 0 0 chr1 41990904 41990929 -200673424 + (T)n Simple_repeat Simple_repeat 1 25 0 1916 100 24 0 chr1 41992188 41992477 -200671876 - AluSg SINE Alu -14 296 1 273 224 30 0 chr1 41992881 41992948 -200671405 - MIR3 SINE MIR -24 184 116 187 264 45 129 chr1 41993007 41993162 -200671191 - L2 LINE L2 -58 3214 3073 280 215 13 51 chr1 41995111 41995190 -200669163 - MIR3 SINE MIR -35 173 98 796 211 28 22 chr1 41996594 41996774 -200667579 + AluJo SINE Alu 120 300 -12 910 214 124 9 chr1 41996960 41997170 -200667183 + MIR SINE MIR 29 262 0 655 267 115 58 chr1 41997359 41997925 -200666428 - MLT1L LTR MaLR 0 615 18 359 281 20 60 chr1 41997929 41998200 -200666153 - L1MC4a LINE L1 -349 5822 5670 204 158 0 0 chr1 41998278 41998316 -200666037 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 307 331 79 31 chr1 41998401 41998528 -200665825 - MIR3 SINE MIR -61 147 15 260 317 252 9 chr1 41998787 41999017 -200665336 - L3 LINE CR1 -11 1566 1281 334 273 67 147 chr1 41999133 41999308 -200665045 + L2 LINE L2 2902 3033 -239 2293 107 10 0 chr1 41999308 41999607 -200664746 - AluSx SINE Alu -10 302 1 334 273 67 147 chr1 41999607 41999805 -200664548 + L2 LINE L2 3033 3245 -27 237 323 0 11 chr1 41999844 41999937 -200664416 + A-rich Low_complexity Low_complexity 2 93 0 706 218 66 105 chr1 42000409 42000789 -200663564 - L2 LINE L2 0 3313 2949 676 286 67 19 chr1 42001085 42001295 -200663058 + MIR SINE MIR 8 227 -35 721 209 163 77 chr1 42001295 42001620 -200662733 + MLT1A1 LTR MaLR 1 353 -12 255 240 98 80 chr1 42001859 42002084 -200662269 - L1M4 LINE L1 -1123 5023 4795 342 208 123 62 chr1 42002084 42002214 -200662139 + L2 LINE L2 3176 3313 0 255 327 0 26 chr1 42053197 42053353 -200611000 + GA-rich Low_complexity Low_complexity 1 152 0 184 274 141 52 chr1 42053866 42054001 -200610352 + MIR3 SINE MIR 4 150 -58 * 259 177 25 89 chr1 42053968 42054047 -200610306 + MIR SINE MIR 117 190 -72 649 230 152 6 chr1 42054131 42054296 -200610057 - MIR SINE MIR -50 212 24 303 355 16 16 chr1 42054310 42054431 -200609922 - MIR SINE MIR -97 165 45 193 250 141 31 chr1 42054445 42054509 -200609844 + MIR SINE MIR 20 90 -118 208 167 0 48 chr1 42054587 42054629 -200609724 + L2 LINE L2 3267 3306 -7 * 756 299 195 11 chr1 42054603 42055181 -200609172 - L2 LINE L2 -7 3306 2624 255 276 38 19 chr1 42056328 42056433 -200607920 + L2 LINE L2 2868 2974 -298 563 300 78 48 chr1 42056683 42057016 -200607337 + L3 LINE CR1 687 1029 -548 1567 134 24 0 chr1 42057187 42057440 -200606913 + AluJo SINE Alu 30 288 -24 354 232 95 11 chr1 42057442 42057537 -200606816 + L3 LINE CR1 1396 1498 -79 1014 259 241 30 chr1 42057542 42057719 -200606634 + L2 LINE L2 2821 2959 -354 6269 71 37 7 chr1 42057719 42058801 -200605552 + L1PA13 LINE L1 5048 6163 0 1014 259 241 30 chr1 42058801 42059029 -200605324 + L2 LINE L2 2959 3312 -1 187 243 54 54 chr1 42059233 42059307 -200605046 - MIR SINE MIR -60 202 129 245 318 26 60 chr1 42059548 42059699 -200604654 - MLT1K LTR MaLR -411 177 32 601 169 28 63 chr1 42060740 42060882 -200603471 + L2 LINE L2 3172 3308 -5 302 220 34 0 chr1 42060953 42061012 -200603341 + L2 LINE L2 3195 3255 -17 902 188 74 0 chr1 42061563 42061739 -200602614 - MER20 DNA MER1_type 0 219 31 1800 151 3 0 chr1 42062230 42062537 -200601816 + AluJb SINE Alu 1 308 0 213 232 136 88 chr1 42064451 42064576 -200599777 + L3 LINE CR1 507 637 -940 260 303 125 26 chr1 42065308 42065460 -200598893 + L1ME LINE L1 5733 5899 -271 859 144 0 8 chr1 42065607 42065739 -200598614 + FLAM_C SINE Alu 1 131 -2 436 291 47 93 chr1 42065780 42066058 -200598295 - L1M4 LINE L1 -1570 4576 4312 700 301 98 29 chr1 42066188 42067386 -200596967 - L1M4 LINE L1 -1807 4339 3060 324 276 91 108 chr1 42067516 42067925 -200596428 - L1M4 LINE L1 -3316 2830 2429 1015 220 51 62 chr1 42068175 42068525 -200595828 - MLT1C LTR MaLR -5 462 1 750 263 112 21 chr1 42068525 42068855 -200595498 - LTR33 LTR ERVL -161 360 1 1985 95 0 86 chr1 42069096 42069423 -200594930 - AluY SINE Alu -11 300 2 1410 239 68 25 chr1 42070116 42070536 -200593817 + MLT1C LTR MaLR 19 467 0 250 224 0 0 chr1 42070540 42070589 -200593764 + MIR SINE MIR 52 100 -162 377 302 105 43 chr1 42070596 42070854 -200593499 + L3 LINE CR1 1213 1486 -91 1312 116 0 15 chr1 42070858 42071057 -200593296 + AluSg/x SINE Alu 117 312 0 380 290 144 7 chr1 42071077 42071232 -200593121 + MIR SINE MIR 19 192 -62 252 229 0 49 chr1 42071248 42071309 -200593044 - MIR SINE MIR -22 240 183 2211 100 7 3 chr1 42072250 42072559 -200591794 - AluSg SINE Alu 0 310 1 749 250 27 22 chr1 42072826 42073010 -200591343 - MIR SINE MIR 0 262 78 1347 216 96 6 chr1 42073011 42073684 -200590669 + L1MD2 LINE L1 5422 6334 0 1243 270 66 23 chr1 42073685 42074191 -200590162 + L2 LINE L2 2776 3313 0 604 243 127 111 chr1 42074601 42075265 -200589088 - L1ME4a LINE L1 -165 5956 5283 350 315 87 33 chr1 42075511 42075695 -200588658 + L1MC5 LINE L1 7679 7872 -89 451 355 92 0 chr1 42075755 42075983 -200588370 - MIR SINE MIR -13 249 1 198 0 0 0 chr1 42076764 42076786 -200587567 + (T)n Simple_repeat Simple_repeat 1 22 0 518 220 203 107 chr1 42076905 42077028 -200587325 - L2 LINE L2 0 3313 3203 1911 101 0 0 chr1 42077028 42077286 -200587067 - AluSq SINE Alu -12 301 44 518 220 203 107 chr1 42077286 42077312 -200587041 - L2 LINE L2 -110 3203 3181 789 99 41 0 chr1 42077312 42077433 -200586920 + L1MA4A LINE L1 6174 6299 -4 518 220 203 107 chr1 42077433 42077853 -200586500 - L2 LINE L2 -132 3181 2682 258 333 43 51 chr1 42078374 42078512 -200585841 - MIR3 SINE MIR -69 139 3 874 234 10 10 chr1 42078532 42078724 -200585629 - MIR SINE MIR -20 242 51 219 348 0 0 chr1 42078827 42078916 -200585437 + (TG)n Simple_repeat Simple_repeat 2 90 0 2299 88 0 3 chr1 42079029 42079337 -200585016 - AluSg SINE Alu -3 307 1 237 338 0 0 chr1 42080203 42080274 -200584079 - L3 LINE CR1 -99 1478 1408 219 88 0 0 chr1 42080914 42080948 -200583405 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 763 231 145 92 chr1 42081395 42081550 -200582803 + MLT1H1 LTR MaLR 22 167 -388 333 0 0 0 chr1 42081550 42081587 -200582766 + (TG)n Simple_repeat Simple_repeat 1 37 0 763 231 145 92 chr1 42081587 42081935 -200582418 + MLT1H1 LTR MaLR 167 555 0 477 210 20 0 chr1 42082230 42082330 -200582023 - MIR SINE MIR -113 149 48 326 233 132 57 chr1 42083273 42083447 -200580906 + MER20B DNA MER1_type 1 191 -28 751 188 170 59 chr1 42083645 42083933 -200580420 - HsTC2a DNA Tc2 -3 739 420 280 309 43 32 chr1 42083940 42084128 -200580225 - LTR28 LTR ERV1 0 1020 831 * 820 187 163 57 chr1 42084121 42084367 -200579986 - LTR1B LTR ERV1 -212 614 343 403 312 65 9 chr1 42084412 42084627 -200579726 - LTR1B LTR ERV1 -576 250 24 * 1109 237 37 108 chr1 42084614 42084752 -200579601 - HsTC2a DNA Tc2 -1475 425 279 840 147 12 6 chr1 42084752 42084915 -200579438 - L1MA4 LINE L1 0 6300 6137 1743 141 23 16 chr1 42084924 42085229 -200579124 - AluJb SINE Alu -5 307 1 1109 237 37 108 chr1 42085229 42085535 -200578818 - HsTC2a DNA Tc2 -1629 271 3 259 290 65 0 chr1 42085791 42085884 -200578469 + MIR SINE MIR 48 146 -116 467 316 36 10 chr1 42086088 42086281 -200578072 - MIR SINE MIR -27 235 38 1681 106 109 4 chr1 42087235 42087522 -200576831 - AluSx SINE Alu 0 314 1 291 247 46 30 chr1 42087523 42087635 -200576718 - MLT1H LTR MaLR -2 602 432 312 273 52 77 chr1 42087681 42087972 -200576381 - MLT1H LTR MaLR -114 295 50 261 277 134 0 chr1 42088498 42088610 -200575743 - MIR3 SINE MIR -18 190 64 827 218 165 4 chr1 42090407 42090655 -200573698 + L2 LINE L2 3025 3312 -1 332 288 8 48 chr1 42091214 42091339 -200573014 - MIR SINE MIR -56 206 87 1523 195 95 24 chr1 42092021 42092391 -200571962 + MSTD LTR MaLR 1 396 0 521 223 128 53 chr1 42092530 42092718 -200571635 - MIR3 SINE MIR -3 205 4 279 273 0 0 chr1 42092705 42092771 -200571582 - L2 LINE L2 -2 3311 3246 * 2291 68 7 3 chr1 42093155 42093450 -200570903 + AluSp SINE Alu 1 296 -17 423 287 0 0 chr1 42093776 42093884 -200570469 - MIR SINE MIR 0 262 155 184 311 54 54 chr1 42093914 42094062 -200570291 + L3 LINE CR1 825 972 -605 184 316 35 0 chr1 42094130 42094187 -200570166 + L3 LINE CR1 1514 1572 -5 262 259 12 25 chr1 42094570 42094651 -200569702 - L2 LINE L2 0 3272 3193 649 126 35 161 chr1 42094681 42094759 -200569594 - MER3 DNA MER1_type -2 207 121 2367 85 3 0 chr1 42094759 42095066 -200569287 + AluSp SINE Alu 1 308 -5 649 126 35 161 chr1 42095066 42095084 -200569269 - MER3 DNA MER1_type -88 121 102 1894 151 0 3 chr1 42095084 42095383 -200568970 + AluJb SINE Alu 1 298 -14 649 126 35 161 chr1 42095383 42095484 -200568869 - MER3 DNA MER1_type -107 102 34 195 100 0 0 chr1 42095925 42095955 -200568398 + (CA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr1 42096103 42096129 -200568224 + (CA)n Simple_repeat Simple_repeat 1 26 0 199 105 0 79 chr1 42096326 42096364 -200567989 - L2 LINE L2 0 3313 3279 588 309 67 32 chr1 42096663 42097038 -200567315 + L2 LINE L2 1606 1993 -1321 1476 246 97 14 chr1 42097314 42097745 -200566608 + MLT1C LTR MaLR 1 467 0 219 285 122 65 chr1 42097855 42097978 -200566375 + MIR3 SINE MIR 9 138 -70 399 345 49 0 chr1 42098361 42098587 -200565766 + LTR16A LTR ERVL 139 375 -75 327 250 0 0 chr1 42099086 42099150 -200565203 + MIR SINE MIR 198 261 -1 334 307 40 57 chr1 42100221 42100397 -200563956 + L2 LINE L2 2887 3059 -213 186 225 38 0 chr1 42100684 42100764 -200563589 + GA-rich Low_complexity Low_complexity 2 84 0 382 183 29 0 chr1 42101699 42101803 -200562550 + (TGAA)n Simple_repeat Simple_repeat 3 109 0 2101 110 3 7 chr1 42102028 42102329 -200562024 - AluSx SINE Alu -12 300 1 1835 109 40 0 chr1 42102512 42102787 -200561566 - AluSq SINE Alu -19 294 9 223 49 49 24 chr1 42102900 42102941 -200561412 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 845 147 43 18 chr1 42103162 42103325 -200561028 + MIR SINE MIR 67 233 -29 39046 83 6 13 chr1 42103942 42110141 -200554212 - L1PA6 LINE L1 0 6154 1 1954 242 41 10 chr1 42110457 42110949 -200553404 - MLT1J LTR MaLR -2 509 3 2299 192 142 57 chr1 42111317 42111990 -200552363 + L1ME1 LINE L1 5375 6116 -50 1997 130 0 3 chr1 42111990 42112291 -200552062 + AluY SINE Alu 1 300 -11 2299 192 142 57 chr1 42112291 42112342 -200552011 + L1ME1 LINE L1 6116 6161 -5 573 329 52 24 chr1 42113314 42113566 -200550787 - MIR SINE MIR -1 261 3 4093 154 23 16 chr1 42113666 42114356 -200549997 + MER39 LTR ERV1 1 695 -12 2070 145 124 18 chr1 42114356 42114743 -200549610 - MSTA LTR MaLR 0 428 1 270 261 0 0 chr1 42114853 42114922 -200549431 + (TAA)n Simple_repeat Simple_repeat 1 69 0 529 230 101 7 chr1 42114956 42115104 -200549249 - MIR SINE MIR -15 247 86 1494 231 144 44 chr1 42115109 42115571 -200548782 + MLT1H LTR MaLR 1 518 -31 2861 153 53 4 chr1 42115571 42116021 -200548332 + MLT2B2 LTR ERVL 2 479 -36 350 57 19 0 chr1 42116021 42116074 -200548279 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 2861 153 53 4 chr1 42116074 42116112 -200548241 + MLT2B2 LTR ERVL 479 514 -1 1494 231 144 44 chr1 42116112 42116148 -200548205 + MLT1H LTR MaLR 518 549 0 3716 187 29 57 chr1 42116157 42117006 -200547347 - LTR1B LTR ERV1 0 826 1 398 277 25 25 chr1 42117201 42117320 -200547033 + MIR SINE MIR 32 150 -58 285 269 135 10 chr1 42117361 42117465 -200546888 - L2 LINE L2 -39 3274 3158 2598 184 41 22 chr1 42117482 42117970 -200546383 + MLT1D LTR MaLR 1 497 -8 597 207 90 94 chr1 42118380 42118636 -200545717 + MER112 DNA MER1_type 1 255 -1 2278 45 41 7 chr1 42118663 42118953 -200545400 - AluY SINE Alu -11 300 1 486 203 13 105 chr1 42118953 42119106 -200545247 - MER5B DNA MER1_type -37 141 3 252 130 0 0 chr1 42119193 42119239 -200545114 + (CA)n Simple_repeat Simple_repeat 2 47 0 2710 195 24 6 chr1 42119597 42119614 -200544739 + MER74A LTR ERVL 1 16 -542 2304 99 3 0 chr1 42119614 42119926 -200544427 - AluSq SINE Alu 0 313 1 2710 195 24 6 chr1 42119926 42120456 -200543897 + MER74A LTR ERVL 16 558 0 553 236 241 6 chr1 42120507 42120681 -200543672 - MIR SINE MIR -19 243 29 386 290 130 30 chr1 42120756 42120925 -200543428 + MER91A DNA MER1_type 1 186 -10 363 106 0 0 chr1 42121485 42121551 -200542802 + (TCTCCC)n Simple_repeat Simple_repeat 2 67 0 7250 49 5 16 chr1 42121551 42123109 -200541244 + SVA Other Other 1 1385 -1 461 284 148 12 chr1 42123634 42123803 -200540550 + MIR SINE MIR 31 222 -40 485 325 51 69 chr1 42123812 42124187 -200540166 + L2 LINE L2 2905 3272 0 231 266 0 85 chr1 42124325 42124419 -200539934 - MER5B DNA MER1_type -91 87 2 223 266 230 18 chr1 42125367 42125480 -200538873 - MIR SINE MIR -99 163 27 1036 195 19 5 chr1 42125508 42125723 -200538630 + L1MB3 LINE L1 5959 6176 -7 921 135 41 6 chr1 42125723 42125893 -200538460 - BC200 scRNA scRNA -24 176 1 1902 145 3 7 chr1 42125914 42126217 -200538136 + AluJb SINE Alu 1 302 -10 447 288 153 18 chr1 42126217 42126387 -200537966 + MIR SINE MIR 51 243 -19 255 321 29 66 chr1 42126438 42126575 -200537778 - MIR SINE MIR -55 153 22 2925 148 40 16 chr1 42127129 42127676 -200536677 + L1MC3 LINE L1 6923 7482 -303 1720 157 30 36 chr1 42127676 42128008 -200536345 + MLT1A1 LTR MaLR 1 330 -35 1064 119 42 186 chr1 42128019 42128380 -200535973 + L1MC3 LINE L1 7477 7785 0 229 313 130 0 chr1 42128779 42128894 -200535459 + L2 LINE L2 3141 3270 -2 1997 106 61 7 chr1 42129113 42129406 -200534947 + AluSx SINE Alu 1 309 -3 488 283 8 0 chr1 42129454 42129574 -200534779 - L2 LINE L2 -4 3309 3189 555 282 173 0 chr1 42129589 42129791 -200534562 - MIR SINE MIR -8 254 18 704 337 31 64 chr1 42130978 42131429 -200532924 - L2 LINE L2 0 3272 2837 297 279 202 8 chr1 42132421 42132550 -200531803 - MIR3 SINE MIR -12 196 43 249 250 96 51 chr1 42132667 42132823 -200531530 - L1ME4a LINE L1 -7 6114 5952 796 271 28 35 chr1 42132858 42133175 -200531178 - L1ME4a LINE L1 -252 5869 5555 306 138 17 17 chr1 42133828 42133886 -200530467 - MLT1J2-int LTR MaLR -1309 62 5 813 271 50 76 chr1 42133890 42134351 -200530002 - MLT1J2 LTR MaLR 0 450 2 405 186 0 0 chr1 42134417 42134503 -200529850 - MER96B DNA MER1_type? -235 182 97 2344 87 0 0 chr1 42134503 42134813 -200529540 + AluY SINE Alu 1 310 -1 426 268 110 77 chr1 42135478 42135870 -200528483 - MLT1K LTR MaLR -3 585 181 792 201 54 5 chr1 42136196 42136380 -200527973 - MIR SINE MIR -23 239 47 953 302 43 41 chr1 42136522 42136620 -200527733 - LTR16B LTR ERVL 0 464 368 2093 112 3 3 chr1 42136620 42136915 -200527438 + AluSx SINE Alu 1 295 -17 953 302 43 41 chr1 42136915 42137279 -200527074 - LTR16B LTR ERVL -96 368 1 204 278 196 10 chr1 42137727 42137824 -200526529 + L2 LINE L2 3199 3313 0 1214 146 51 67 chr1 42139385 42139464 -200524889 + MER33 DNA MER1_type 1 69 -2516 2243 107 3 0 chr1 42139464 42139772 -200524581 + AluSc SINE Alu 1 309 0 1214 146 51 67 chr1 42139772 42140005 -200524348 + MER33 DNA MER1_type 69 297 -27 3817 195 67 15 chr1 42140005 42141019 -200523334 + L1MD2 LINE L1 5092 6141 -218 4171 21 0 2 chr1 42141061 42141536 -200522817 - L1PA3 LINE L1 0 6155 5682 4051 20 0 0 chr1 42141536 42142071 -200522282 + L1PA3 LINE L1 5180 5714 -441 316 287 154 7 chr1 42142250 42142386 -200521967 + L2 LINE L2 3117 3272 0 256 287 138 51 chr1 42143547 42143747 -200520606 - MIR SINE MIR -46 216 3 980 268 107 9 chr1 42143906 42144242 -200520111 - MLT1J2 LTR MaLR 0 450 82 301 296 59 110 chr1 42145599 42145971 -200518382 + L2 LINE L2 2918 3270 -2 207 0 0 0 chr1 42146386 42146409 -200517944 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 345 276 157 5 chr1 42146452 42146637 -200517716 + MIR SINE MIR 20 232 -30 448 320 16 8 chr1 42147040 42147165 -200517188 + MIR SINE MIR 25 150 -112 261 145 113 0 chr1 42147170 42147232 -200517121 + MER104 DNA Tc2 28 96 -84 247 352 11 0 chr1 42147308 42147399 -200516954 + MIR SINE MIR 157 248 -14 1707 157 31 10 chr1 42147741 42148034 -200516319 + AluSg SINE Alu 1 299 -11 512 254 165 22 chr1 42148162 42148386 -200515967 - LTR16C LTR ERVL -12 479 224 928 130 4 146 chr1 42148438 42148692 -200515661 - LTR41 LTR ERVL -6 767 550 249 313 40 72 chr1 42150402 42150647 -200513706 + L2 LINE L2 2978 3208 -64 1944 190 6 33 chr1 42150683 42151046 -200513307 - MLT1A1 LTR MaLR -12 353 1 1996 142 0 0 chr1 42151065 42151347 -200513006 + AluSx SINE Alu 1 306 0 217 0 0 0 chr1 42151347 42151371 -200512982 + (TAAA)n Simple_repeat Simple_repeat 3 180 0 195 217 133 17 chr1 42151375 42151435 -200512918 + MIR SINE MIR 3 69 -193 226 276 171 0 chr1 42151462 42151538 -200512815 + MIR SINE MIR 174 262 0 822 228 6 0 chr1 42152404 42152562 -200511791 + MER45A DNA AcHobo 18 176 -2 362 296 40 24 chr1 42152696 42152821 -200511532 + MIR SINE MIR 25 151 -111 202 297 63 45 chr1 42153108 42153219 -200511134 + L2 LINE L2 2734 2846 -468 765 270 5 5 chr1 42153514 42153714 -200510639 + MIR SINE MIR 15 214 -48 289 259 9 60 chr1 42153740 42153856 -200510497 - L2 LINE L2 -10 3262 3153 1094 214 108 51 chr1 42153863 42154329 -200510024 + MLT1G1 LTR MaLR 1 540 -9 1791 226 40 32 chr1 42154621 42155120 -200509233 + MLT1D LTR MaLR 1 503 -2 1732 160 7 10 chr1 42155204 42155492 -200508861 + AluJo SINE Alu 6 292 -20 296 238 183 24 chr1 42155898 42156024 -200508329 + MIR3 SINE MIR 33 178 -30 180 0 0 0 chr1 42156464 42156484 -200507869 + (TTA)n Simple_repeat Simple_repeat 3 22 0 229 373 19 13 chr1 42156486 42156644 -200507709 - L1ME3A LINE L1 -23 6147 5989 * 1904 272 61 54 chr1 42156612 42157009 -200507344 - L1ME3A LINE L1 -225 5945 5552 1712 183 7 3 chr1 42157009 42157298 -200507055 - AluJb SINE Alu -22 290 1 1904 272 61 54 chr1 42157298 42157981 -200506372 - L1ME3A LINE L1 -618 5552 4875 2108 129 7 23 chr1 42157981 42158291 -200506062 + AluSx SINE Alu 1 305 -7 1904 272 61 54 chr1 42158291 42159098 -200505255 - L1ME3A LINE L1 -1295 4875 4158 522 248 66 7 chr1 42159120 42159257 -200505096 - MIR SINE MIR -112 150 6 2201 129 3 0 chr1 42159465 42159774 -200504579 + AluSx SINE Alu 1 310 -2 229 307 45 0 chr1 42159784 42159872 -200504481 - MIR SINE MIR -54 208 117 381 275 35 49 chr1 42160139 42160281 -200504072 - L2 LINE L2 0 3272 3133 295 343 100 35 chr1 42161869 42162519 -200501834 + L2 LINE L2 1602 2293 -1021 1724 133 4 0 chr1 42162564 42162827 -200501526 - L1PA13 LINE L1 -7 6156 5893 184 323 0 0 chr1 42162950 42163015 -200501338 + L2 LINE L2 2459 2523 -791 546 109 43 11 chr1 42163085 42163177 -200501176 + L1MA4 LINE L1 6176 6270 -30 311 161 60 31 chr1 42163183 42163288 -200501065 - HAL1b LINE L1 -34 6063 1232 218 256 0 0 chr1 42163313 42163356 -200500997 - L2 LINE L2 -19 3253 3211 1810 114 0 0 chr1 42163561 42163798 -200500555 - AluSx SINE Alu -75 237 1 783 271 82 36 chr1 42163824 42164484 -200499869 - L1ME LINE L1 -423 5698 5010 4652 215 55 29 chr1 42164605 42165375 -200498978 + L1ME2 LINE L1 3954 4702 -1462 2909 162 33 35 chr1 42165375 42165925 -200498428 - MER44D DNA MER2_type -1 604 1 4652 215 55 29 chr1 42165925 42167297 -200497056 + L1ME2 LINE L1 4702 6154 -10 1942 149 0 3 chr1 42167311 42167616 -200496737 + AluSx SINE Alu 1 304 0 187 0 121 0 chr1 42168495 42168528 -200495825 + GA-rich Low_complexity Low_complexity 5 41 0 368 225 21 84 chr1 42169412 42169466 -200494887 + MIR3 SINE MIR 13 69 -139 1539 189 47 80 chr1 42169466 42169853 -200494500 - MLT1A2 LTR MaLR 0 374 1 368 225 21 84 chr1 42169853 42169940 -200494413 + MIR3 SINE MIR 69 145 -63 627 263 42 5 chr1 42171661 42171851 -200492502 - MLT1H LTR MaLR -341 208 12 290 269 83 9 chr1 42171913 42172021 -200492332 - MIR SINE MIR -73 189 74 590 260 68 6 chr1 42172228 42172405 -200491948 - MER117 DNA MER1_type 0 197 10 252 282 126 0 chr1 42172476 42172579 -200491774 + MIR3 SINE MIR 4 119 -89 233 234 0 0 chr1 42172618 42172665 -200491688 - L2 LINE L2 -5 3267 3221 306 341 16 28 chr1 42172998 42173180 -200491173 + MIR SINE MIR 27 206 -56 446 199 37 105 chr1 42173257 42173448 -200490905 + MER5B DNA MER1_type 1 178 0 1143 183 68 52 chr1 42173463 42173486 -200490867 - MLT2B1 LTR ERVL -17 503 482 543 31 0 0 chr1 42173486 42173551 -200490802 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1143 183 68 52 chr1 42173551 42173967 -200490386 - MLT2B1 LTR ERVL -38 482 1 2301 119 3 0 chr1 42175281 42175583 -200488770 + AluSq SINE Alu 1 303 -10 525 212 188 12 chr1 42176672 42176837 -200487516 + MIR SINE MIR 47 240 -22 182 326 0 0 chr1 42176805 42176854 -200487499 + L2 LINE L2 3213 3261 -11 * 181 304 127 0 chr1 42177179 42177258 -200487095 - L2 LINE L2 0 3313 3225 278 248 34 26 chr1 42178015 42178132 -200486221 - L2 LINE L2 -69 3244 3127 1400 201 70 31 chr1 42178200 42178671 -200485682 - MLT1H LTR MaLR -3 546 10 1645 297 81 54 chr1 42178743 42179405 -200484948 - L2 LINE L2 -245 3068 2367 2001 168 13 43 chr1 42179405 42179781 -200484572 + MLT1A1 LTR MaLR 1 365 0 1645 297 81 54 chr1 42179781 42180180 -200484173 - L2 LINE L2 -946 2367 1980 5353 249 72 46 chr1 42180180 42181687 -200482666 + L1MEc LINE L1 37 1504 -4892 2326 102 10 7 chr1 42181687 42181990 -200482363 - AluSq SINE Alu -9 304 1 5353 249 72 46 chr1 42181990 42182479 -200481874 + L1MEc LINE L1 1504 1979 -4417 304 54 429 0 chr1 42182479 42182535 -200481818 - MADE1 DNA Mariner 0 80 1 5353 249 72 46 chr1 42182535 42182723 -200481630 + L1MEc LINE L1 1979 2161 -4235 2214 111 17 0 chr1 42182723 42183020 -200481333 + AluSx SINE Alu 1 302 -10 5353 249 72 46 chr1 42183020 42183166 -200481187 + L1MEc LINE L1 2161 2429 -3967 916 165 49 31 chr1 42183197 42183421 -200480932 + L1MEc LINE L1 2714 2941 -3274 216 0 0 0 chr1 42185959 42185983 -200478370 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3001 227 45 8 chr1 42185989 42186836 -200477517 + L1MEc LINE L1 2935 3812 -2403 228 274 60 0 chr1 42186839 42186923 -200477430 - L2 LINE L2 -1324 1990 1902 882 281 146 21 chr1 42187644 42188021 -200476332 - LTR16B LTR ERVL 0 464 41 1565 193 51 0 chr1 42188042 42188316 -200476037 + AluJb SINE Alu 1 288 -24 396 0 0 0 chr1 42189395 42189439 -200474914 + (TTA)n Simple_repeat Simple_repeat 2 45 0 272 274 60 26 chr1 42189775 42189892 -200474461 + MIR SINE MIR 46 166 -96 277 279 117 9 chr1 42191024 42191135 -200473218 - L2 LINE L2 0 3313 3191 278 277 179 76 chr1 42191137 42191321 -200473032 - MIR SINE MIR -14 248 46 484 260 103 20 chr1 42191485 42191689 -200472664 + MIR SINE MIR 15 235 -27 207 0 0 0 chr1 42191967 42191990 -200472363 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1778 92 0 0 chr1 42191991 42192208 -200472145 - AluSx SINE Alu -76 236 20 498 274 6 40 chr1 42192333 42192508 -200471845 - MIR SINE MIR -43 219 51 439 258 186 43 chr1 42193245 42193690 -200470663 - L1ME4a LINE L1 -4 6117 5609 347 283 123 32 chr1 42193858 42194077 -200470276 + MIR SINE MIR 2 240 -22 2402 46 0 0 chr1 42194278 42194605 -200469748 + AluY SINE Alu 1 327 0 220 148 49 25 chr1 42195694 42195775 -200468578 + CT-rich Low_complexity Low_complexity 4 86 0 715 244 64 30 chr1 42195998 42196232 -200468121 - MIR SINE MIR -1 261 20 2143 90 7 24 chr1 42196275 42196565 -200467788 - AluSc SINE Alu -23 286 2 183 156 0 0 chr1 42196732 42196764 -200467589 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 2057 156 42 67 chr1 42197616 42198172 -200466181 - MLT2A2 LTR ERVL 0 554 1 383 299 111 19 chr1 42198186 42198457 -200465896 + L2 LINE L2 2708 3003 -310 204 163 23 0 chr1 42199542 42199585 -200464768 + MIR SINE MIR 162 205 -57 461 234 16 8 chr1 42199693 42199817 -200464536 - MIR SINE MIR -70 192 68 183 295 53 32 chr1 42199847 42199942 -200464411 - L2 LINE L2 -26 3246 3150 4833 47 5 10 chr1 42199990 42200584 -200463769 + LTR10C LTR ERV1 1 591 0 212 301 189 20 chr1 42200599 42200752 -200463601 - MIR SINE MIR -38 224 46 292 330 10 10 chr1 42201136 42201233 -200463120 - MIR3 SINE MIR -8 200 104 669 319 43 24 chr1 42201377 42201630 -200462723 + MIR SINE MIR 4 260 -2 275 71 24 0 chr1 42202738 42202780 -200461573 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 287 241 138 44 chr1 42203372 42203546 -200460807 + MIR SINE MIR 30 212 -50 2111 105 25 0 chr1 42203987 42204430 -200459923 + AluSx SINE Alu 1 450 0 310 284 172 37 chr1 42205294 42205428 -200458925 - MIR SINE MIR -102 160 9 357 176 77 33 chr1 42205597 42205688 -200458665 + MER103 DNA DNA 2 96 -70 614 197 197 7 chr1 42205794 42205946 -200458407 + MER5A DNA MER1_type 9 189 0 324 311 10 10 chr1 42206695 42206798 -200457555 - MIR SINE MIR -150 112 10 911 284 108 13 chr1 42207156 42207537 -200456816 + L2 LINE L2 2327 2743 -571 414 278 23 38 chr1 42207535 42207668 -200456685 + L2 LINE L2 3183 3313 0 * 23 0 0 0 chr1 42207942 42207965 -200456388 + AT_rich Low_complexity Low_complexity 1 23 0 244 207 11 58 chr1 42208938 42209025 -200455328 - LTR67 LTR ERVL 0 557 475 247 306 57 62 chr1 42209605 42209743 -200454610 + L2 LINE L2 3106 3244 -69 2931 114 16 21 chr1 42209743 42210173 -200454180 - MSTA LTR MaLR 0 428 1 247 306 57 62 chr1 42210173 42210243 -200454110 + L2 LINE L2 3244 3313 0 289 333 62 8 chr1 42210249 42210378 -200453975 - L2 LINE L2 -213 3059 2924 210 304 167 14 chr1 42210471 42210609 -200453744 - L2 LINE L2 -566 2748 2590 182 299 116 68 chr1 42210697 42210844 -200453509 + L2 LINE L2 3119 3272 0 2556 51 0 26 chr1 42212453 42212766 -200451587 + AluY SINE Alu 1 305 -6 344 326 16 22 chr1 42212842 42213026 -200451327 - L1ME4a LINE L1 -257 5864 5682 206 182 55 73 chr1 42213234 42213289 -200451064 + MER5B DNA MER1_type 90 143 -35 392 207 27 54 chr1 42213785 42213896 -200450457 - MIR SINE MIR -64 198 91 199 196 82 103 chr1 42214455 42214552 -200449801 - L2 LINE L2 -251 3062 2968 1592 99 63 16 chr1 42214741 42214993 -200449360 - L1PA11 LINE L1 0 6174 5911 315 317 102 27 chr1 42215112 42215298 -200449055 + HAL1b LINE L1 1142 1341 -7 385 279 114 88 chr1 42216426 42216813 -200447540 - L2 LINE L2 -49 3223 2827 467 242 86 102 chr1 42216817 42216962 -200447391 + MIR SINE MIR 1 142 -120 2294 106 0 0 chr1 42216962 42217264 -200447089 + AluSx SINE Alu 1 302 -10 467 242 86 102 chr1 42217264 42217374 -200446979 + MIR SINE MIR 142 252 -10 764 268 23 57 chr1 42218404 42218669 -200445684 - MIR SINE MIR -5 257 2 369 275 69 62 chr1 42218698 42218858 -200445495 - MIR3 SINE MIR -36 172 12 2046 154 62 20 chr1 42219041 42219431 -200444922 + MSTB LTR MaLR 21 426 0 1071 144 21 159 chr1 42219662 42220002 -200444351 + MLT1A1 LTR MaLR 73 365 0 2219 116 0 3 chr1 42220281 42220582 -200443771 - AluSq SINE Alu -13 300 1 282 222 12 37 chr1 42221126 42221207 -200443146 + MLT1K LTR MaLR 158 236 -352 399 171 11 23 chr1 42221393 42221481 -200442872 - MLT1I LTR MaLR 0 409 323 378 301 28 15 chr1 42223081 42223222 -200441131 - MIR3 SINE MIR -72 136 12 367 329 48 12 chr1 42223389 42223556 -200440797 - MIR SINE MIR -4 258 86 591 283 88 81 chr1 42223856 42224490 -200439863 + L2 LINE L2 2561 3205 -67 726 262 127 0 chr1 42224761 42224982 -200439371 - MIR SINE MIR -12 250 2 1015 239 118 17 chr1 42225554 42226049 -200438304 + MLT1L LTR MaLR 17 613 -2 348 279 99 27 chr1 42226055 42226166 -200438187 + MIR SINE MIR 17 135 -73 2046 232 50 51 chr1 42226318 42226398 -200437955 - HsTC2a DNA MER2_type -1159 741 662 1622 148 99 42 chr1 42226398 42226681 -200437672 + AluJb SINE Alu 2 300 -12 2046 232 50 51 chr1 42226681 42227342 -200437011 - HsTC2a DNA MER2_type -1238 662 1 224 322 195 33 chr1 42227438 42227801 -200436552 - L2 LINE L2 -240 3032 2611 317 183 0 0 chr1 42227883 42227943 -200436410 + MLT1H LTR MaLR 76 135 -414 521 318 45 9 chr1 42228101 42228305 -200436048 + MIR SINE MIR 10 215 -47 243 247 14 14 chr1 42228572 42228645 -200435708 - LTR33 LTR ERVL -448 73 1 273 251 153 12 chr1 42228653 42228816 -200435537 + L1ME4a LINE L1 5757 5942 -179 313 261 43 22 chr1 42228817 42228909 -200435444 + L1ME4a LINE L1 5984 6077 -44 2480 153 64 12 chr1 42228962 42229367 -200434986 + MSTB LTR MaLR 1 426 0 760 293 56 9 chr1 42229560 42229792 -200434561 - MIR SINE MIR 0 262 20 381 298 50 66 chr1 42229974 42230155 -200434198 + MIR3 SINE MIR 24 201 -7 813 183 82 82 chr1 42230704 42230869 -200433484 + LTR16C LTR ERVL 185 349 -142 2341 104 0 0 chr1 42230869 42231166 -200433187 - AluSx SINE Alu -15 297 1 1894 117 87 0 chr1 42231168 42231434 -200432919 - AluSx SINE Alu -19 293 5 813 183 82 82 chr1 42231434 42231533 -200432820 + LTR16C LTR ERVL 349 452 -39 816 181 0 0 chr1 42231536 42231680 -200432673 + MLT2F LTR ERVL 3 146 -517 1177 219 72 53 chr1 42231711 42232072 -200432281 + MLT2F LTR ERVL 260 627 -36 310 311 104 0 chr1 42233052 42233158 -200431195 + L2 LINE L2 3155 3271 -1 216 315 19 0 chr1 42233180 42233234 -200431119 - MIR SINE MIR -124 84 30 2206 129 3 0 chr1 42233311 42233613 -200430740 + AluSx SINE Alu 1 303 -9 237 388 8 8 chr1 42234552 42234681 -200429672 + L2 LINE L2 2767 2895 -419 2016 177 14 49 chr1 42235397 42235459 -200428894 - MLT2D LTR ERVL 0 414 351 2277 101 0 3 chr1 42235459 42235778 -200428575 - AluSx SINE Alu 0 318 1 2016 177 14 49 chr1 42235778 42236143 -200428210 - MLT2D LTR ERVL -63 351 1 525 174 18 9 chr1 42236397 42236506 -200427847 + MLT2D LTR ERVL 253 362 -52 2192 116 17 0 chr1 42236507 42236808 -200427545 + AluSc SINE Alu 1 306 -3 627 179 57 0 chr1 42236933 42237056 -200427297 + MER31B LTR ERV1 337 466 0 227 197 86 120 chr1 42237071 42237095 -200427258 + MIR SINE MIR 139 162 -100 2240 180 51 28 chr1 42237095 42237589 -200426764 - MLT1D LTR MaLR 0 505 1 227 197 86 120 chr1 42237589 42237635 -200426718 + MIR SINE MIR 162 206 -56 2191 128 10 0 chr1 42237635 42237941 -200426412 + AluSx SINE Alu 1 309 -3 227 197 86 120 chr1 42237941 42237986 -200426367 + MIR SINE MIR 206 251 -11 182 356 34 0 chr1 42237988 42238047 -200426306 + L2 LINE L2 3237 3297 -16 228 35 0 0 chr1 42238063 42238092 -200426261 + (TGG)n Simple_repeat Simple_repeat 3 31 0 191 250 0 0 chr1 42238228 42238272 -200426081 + L2 LINE L2 3213 3256 -16 240 35 0 0 chr1 42239062 42239091 -200425262 + (CA)n Simple_repeat Simple_repeat 2 30 0 2244 57 8 0 chr1 42239238 42239502 -200424851 - AluY SINE Alu -2 309 44 237 229 21 0 chr1 42239569 42239617 -200424736 + L2 LINE L2 3184 3232 -40 208 233 163 47 chr1 42240640 42240726 -200423627 - L2 LINE L2 0 3313 3218 248 263 168 0 chr1 42241332 42241427 -200422926 - L2 LINE L2 -270 3043 2933 1323 145 10 0 chr1 42241786 42241986 -200422367 - AluJb SINE Alu -11 301 100 676 84 0 0 chr1 42242096 42242179 -200422174 - AluJb SINE Alu -188 124 42 2081 123 7 16 chr1 42242254 42242563 -200421790 + AluJb SINE Alu 1 306 -6 2168 195 25 39 chr1 42242673 42242985 -200421368 - MLT1D LTR MaLR 0 505 201 2337 109 0 0 chr1 42242985 42243298 -200421055 - AluSq SINE Alu 0 313 1 2168 195 25 39 chr1 42243298 42243497 -200420856 - MLT1D LTR MaLR -304 201 1 18337 30 3 0 chr1 42243771 42246705 -200417648 + L1PA4 LINE L1 3219 6155 0 708 201 47 53 chr1 42246719 42246888 -200417465 + AluJb SINE Alu 136 303 -9 329 344 96 18 chr1 42246893 42247227 -200417126 - L2 LINE L2 -1131 2183 1824 714 137 0 0 chr1 42247283 42247385 -200416968 + FLAM_A SINE Alu 1 102 -40 714 228 16 37 chr1 42247388 42247577 -200416776 - MIR SINE MIR -65 197 13 23 0 0 0 chr1 42248351 42248374 -200415979 + AT_rich Low_complexity Low_complexity 1 23 0 439 273 47 73 chr1 42248379 42248529 -200415824 + MIR SINE MIR 6 151 -111 190 194 0 0 chr1 42248537 42248568 -200415785 + L2 LINE L2 3202 3232 -40 925 275 60 16 chr1 42248573 42248824 -200415529 + MIR SINE MIR 1 262 0 2255 114 0 16 chr1 42249382 42249729 -200414624 - AluSx SINE Alu 0 342 1 243 318 0 0 chr1 42249898 42249961 -200414392 + GA-rich Low_complexity Low_complexity 3 65 0 385 255 54 40 chr1 42250426 42250575 -200413778 + MER103 DNA DNA 8 158 -8 296 287 38 64 chr1 42250743 42250900 -200413453 + L2 LINE L2 2896 3048 -224 587 247 37 74 chr1 42251058 42251290 -200413063 - MIR SINE MIR -2 260 39 2488 75 0 3 chr1 42251322 42251617 -200412736 + AluY SINE Alu 1 294 -17 714 278 27 7 chr1 42251613 42251822 -200412531 - MLT1L LTR MaLR -92 501 310 210 246 323 0 chr1 42251827 42251892 -200412461 + MIR SINE MIR 17 102 -160 198 238 119 0 chr1 42251896 42251938 -200412415 + L3 LINE CR1 1397 1443 -134 710 304 18 84 chr1 42251955 42252290 -200412063 + L2 LINE L2 2953 3265 -7 2027 134 0 0 chr1 42252536 42252834 -200411519 + AluJb SINE Alu 6 303 -9 662 261 48 45 chr1 42252834 42253072 -200411281 + MIR SINE MIR 12 256 -6 226 305 76 9 chr1 42253459 42253564 -200410789 + MIR SINE MIR 20 131 -77 515 272 39 115 chr1 42253594 42253873 -200410480 + MIR SINE MIR 4 261 -1 2316 74 7 0 chr1 42254253 42254552 -200409801 - AluY SINE Alu -10 301 1 715 297 16 39 chr1 42254593 42254849 -200409504 + MIR SINE MIR 13 262 0 363 291 92 35 chr1 42255065 42255206 -200409147 + MIR3 SINE MIR 60 208 0 399 316 57 19 chr1 42255360 42255518 -200408835 + MIR SINE MIR 23 186 -76 281 319 110 26 chr1 42255528 42255719 -200408634 + MLT1K LTR MaLR 202 408 -180 742 188 5 92 chr1 42255830 42256037 -200408316 + L2 LINE L2 3113 3301 -12 1011 98 0 0 chr1 42256051 42256184 -200408169 - FLAM_C SINE Alu 0 133 1 197 71 0 0 chr1 42256184 42256212 -200408141 + L2 LINE L2 3286 3313 0 345 317 74 15 chr1 42256449 42256651 -200407702 + L2 LINE L2 2105 2318 -996 538 241 48 21 chr1 42256664 42256809 -200407544 - MER45A DNA AcHobo -26 152 4 307 300 33 8 chr1 42256817 42256937 -200407416 + L2 LINE L2 2325 2447 -867 278 320 21 10 chr1 42257017 42257114 -200407239 + L2 LINE L2 2615 2712 -602 203 162 0 27 chr1 42259812 42259849 -200404504 - MIR SINE MIR -90 118 83 484 238 107 30 chr1 42260031 42260199 -200404154 + MIR SINE MIR 69 249 -13 1800 177 0 0 chr1 42260209 42260519 -200403834 + AluJo SINE Alu 1 310 -2 778 218 245 58 chr1 42261080 42261584 -200402769 - MLT1G LTR MaLR 0 590 1 252 315 115 36 chr1 42261857 42262022 -200402331 + L2 LINE L2 2896 3073 -199 1799 70 106 4 chr1 42262107 42262393 -200401960 + AluY SINE Alu 1 312 0 2505 235 12 24 chr1 42262393 42262968 -200401385 - MER74B LTR ERVL 0 622 55 2030 114 0 0 chr1 42262987 42263277 -200401076 + AluSx SINE Alu 1 290 -22 356 121 36 48 chr1 42263317 42263400 -200400953 + MER3 DNA MER1_type 128 209 0 519 299 51 11 chr1 42267324 42267501 -200396852 - MIR SINE MIR -51 211 28 390 304 0 16 chr1 42267539 42267664 -200396689 - L3 LINE CR1 -40 1537 1415 210 91 0 0 chr1 42267760 42267793 -200396560 + (ATAAG)n Simple_repeat Simple_repeat 5 37 0 503 214 78 140 chr1 42268225 42268482 -200395871 - MIR SINE MIR -19 243 3 326 325 35 60 chr1 42268631 42269034 -200395319 + L1MC4a LINE L1 3606 3998 -2148 761 178 0 0 chr1 42269065 42269183 -200395170 + FLAM_C SINE Alu 1 118 -15 1406 206 50 39 chr1 42269208 42269539 -200394814 + L1ME2 LINE L1 5458 5795 -369 1749 220 13 24 chr1 42269539 42269917 -200394436 - MLT1A2 LTR MaLR 0 374 1 1406 206 50 39 chr1 42269917 42269945 -200394408 + L1ME2 LINE L1 5795 5821 -343 899 227 12 51 chr1 42269970 42270226 -200394127 + L1ME2 LINE L1 5909 6154 -10 337 250 33 8 chr1 42270384 42270504 -200393849 + L1MC4 LINE L1 7919 8041 -1 247 339 9 0 chr1 42270525 42270634 -200393719 + L1MC4a LINE L1 4031 4140 -2006 267 79 0 0 chr1 42270673 42270711 -200393642 + (A)n Simple_repeat Simple_repeat 1 38 0 417 330 88 22 chr1 42271026 42271253 -200393100 + L1MC4a LINE L1 4236 4477 -1669 545 314 86 24 chr1 42271256 42271642 -200392711 - MLT1I LTR MaLR 0 409 1 434 307 49 36 chr1 42271670 42271687 -200392666 + L1MC4a LINE L1 4527 4542 -1604 2162 86 3 13 chr1 42271687 42271989 -200392364 + AluY SINE Alu 1 299 -12 434 307 49 36 chr1 42271989 42272502 -200391851 + L1MC4a LINE L1 4542 5064 -1082 564 266 102 99 chr1 42272702 42272995 -200391358 + L1MC4a LINE L1 5257 5541 -612 2159 108 0 3 chr1 42272995 42273301 -200391052 - AluSq SINE Alu -8 305 1 564 266 102 99 chr1 42273301 42273533 -200390820 + L1MC4a LINE L1 5541 5771 -382 14015 117 73 30 chr1 42273691 42274292 -200390061 - Tigger1 DNA MER2_type 0 2418 1845 909 96 22 0 chr1 42274292 42274428 -200389925 + L1MA3 LINE L1 6167 6305 0 14015 117 73 30 chr1 42274428 42276131 -200388222 - Tigger1 DNA MER2_type -573 1845 14 7903 160 11 116 chr1 42276130 42277945 -200386408 + MER52A LTR ERV1 133 1755 0 * 292 200 40 0 chr1 42277997 42278072 -200386281 + L1MC4a LINE L1 5813 5890 -1918 670 258 62 58 chr1 42278466 42278638 -200385715 + MIR SINE MIR 20 195 -67 2036 86 41 0 chr1 42278638 42278928 -200385425 + AluSx SINE Alu 1 302 -10 670 258 62 58 chr1 42278928 42278980 -200385373 + MIR SINE MIR 195 245 -17 231 36 0 0 chr1 42279887 42279915 -200384438 + (GGGTG)n Simple_repeat Simple_repeat 5 32 0 332 275 153 37 chr1 42280141 42280330 -200384023 + MIR SINE MIR 21 231 -31 4301 172 86 9 chr1 42280753 42282067 -200382286 + L1MB5 LINE L1 4735 6155 -19 2369 61 0 26 chr1 42282146 42282457 -200381896 + AluY SINE Alu 1 303 -8 384 232 75 70 chr1 42282457 42282704 -200381649 - L2 LINE L2 -278 2994 2747 307 266 48 16 chr1 42282851 42282975 -200381378 + L2 LINE L2 2933 3060 -212 240 246 33 0 chr1 42284154 42284215 -200380138 + L2 LINE L2 3250 3312 -1 227 297 109 18 chr1 42284454 42284648 -200379705 - MIR SINE MIR 0 262 4 1777 163 3 3 chr1 42284697 42284997 -200379356 - AluJb SINE Alu -12 300 1 27 0 0 0 chr1 42285008 42285035 -200379318 + AT_rich Low_complexity Low_complexity 1 27 0 1854 136 35 0 chr1 42285040 42285327 -200379026 + AluSx SINE Alu 1 297 -15 200 262 33 16 chr1 42285695 42285756 -200378597 + MIR SINE MIR 84 145 -117 180 297 87 80 chr1 42285802 42286088 -200378265 + L2 LINE L2 2825 3112 -160 511 280 65 35 chr1 42286147 42286347 -200378006 + MIR SINE MIR 1 206 -56 943 183 0 0 chr1 42286348 42286512 -200377841 - FRAM SINE Alu -2 164 1 3656 147 45 47 chr1 42286647 42287409 -200376944 + LTR1B LTR ERV1 1 783 -2 1192 123 0 0 chr1 42287421 42287600 -200376753 + L1MB3 LINE L1 5687 5865 -318 1171 117 22 6 chr1 42287600 42287780 -200376573 + LTR1B LTR ERV1 283 465 -361 1265 149 60 16 chr1 42287781 42288030 -200376323 + L1MB3 LINE L1 5877 6136 -47 1481 87 5 0 chr1 42288118 42288353 -200376000 - AluSc SINE Alu 0 321 86 295 330 128 16 chr1 42289208 42289396 -200374957 - MIR SINE MIR -50 212 4 909 284 34 0 chr1 42290649 42290888 -200373465 + MIR SINE MIR 2 248 -14 194 167 42 0 chr1 42292645 42292693 -200371660 + MIR SINE MIR 86 135 -73 27 0 0 0 chr1 42294802 42294829 -200369524 + AT_rich Low_complexity Low_complexity 1 27 0 239 298 96 19 chr1 42295459 42295563 -200368790 - L2 LINE L2 -5 3308 3197 405 184 122 0 chr1 42295893 42295991 -200368362 + L1ME3A LINE L1 5853 5962 -208 335 262 62 49 chr1 42296033 42296237 -200368116 + L1ME3A LINE L1 5963 6161 -1 438 252 126 8 chr1 42296441 42296560 -200367793 + MIR3 SINE MIR 41 173 -35 234 228 35 18 chr1 42298859 42298916 -200365437 + MIR SINE MIR 140 197 -65 553 282 25 98 chr1 42298934 42299020 -200365333 - MIR SINE MIR 0 262 171 2063 112 10 3 chr1 42299020 42299325 -200365028 + AluSx SINE Alu 1 307 -5 2212 79 0 55 chr1 42299328 42299656 -200364697 + AluSg SINE Alu 1 310 0 553 282 25 98 chr1 42299656 42299842 -200364511 - MIR SINE MIR -93 169 6 203 279 15 29 chr1 42299896 42299964 -200364389 + MIR SINE MIR 54 120 -88 237 108 0 0 chr1 42302522 42302559 -200361794 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1937 150 61 3 chr1 42303066 42303393 -200360960 + MER7A DNA MER2_type 2 345 -1 296 192 26 51 chr1 42303400 42303478 -200360875 + MER5B DNA MER1_type 102 177 -1 360 287 70 0 chr1 42303905 42304034 -200360319 - L1ME LINE L1 -590 5531 5394 2386 85 7 3 chr1 42304157 42304451 -200359902 + AluSq SINE Alu 1 295 -18 264 224 0 30 chr1 42304666 42304733 -200359620 + MIR SINE MIR 74 138 -70 462 252 9 0 chr1 42304760 42304875 -200359478 + L2 LINE L2 3198 3313 0 3455 143 48 51 chr1 42305207 42305368 -200358985 + MER39 LTR ERV1 1 161 -546 1623 143 92 27 chr1 42305368 42305661 -200358692 + AluJb SINE Alu 1 312 0 3455 143 48 51 chr1 42305661 42306081 -200358272 + MER39 LTR ERV1 161 582 -125 2344 94 3 7 chr1 42306081 42306389 -200357964 - AluSq SINE Alu -6 307 1 3455 143 48 51 chr1 42306389 42306451 -200357902 + MER39 LTR ERV1 582 643 -64 262 210 86 0 chr1 42306484 42306565 -200357788 + MER34 LTR ERV1 455 542 0 1064 274 102 18 chr1 42307345 42307728 -200356625 - MLT1J2 LTR MaLR 0 450 36 495 250 78 29 chr1 42307886 42308090 -200356263 + MIR SINE MIR 31 244 -18 2284 103 0 3 chr1 42309405 42309697 -200354656 + AluSx SINE Alu 1 291 -21 2039 127 10 16 chr1 42310018 42310325 -200354028 + AluJo SINE Alu 1 305 -7 488 235 54 13 chr1 42311174 42311323 -200353030 + MER103 DNA DNA 10 164 -2 399 282 190 0 chr1 42311424 42311587 -200352766 + MIR SINE MIR 27 220 -42 2403 83 3 16 chr1 42311690 42312004 -200352349 + AluSp SINE Alu 3 312 -1 210 261 0 0 chr1 42312339 42312385 -200351968 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 281 281 73 0 chr1 42312842 42312938 -200351415 - MER94 DNA DNA -31 103 1 2449 82 0 7 chr1 42315298 42315603 -200348750 + AluY SINE Alu 1 303 -8 908 182 153 37 chr1 42316274 42316654 -200347699 + L1MC5 LINE L1 7508 7931 -30 1466 155 13 4 chr1 42316802 42317034 -200347319 - AluJo SINE Alu -14 298 65 585 155 0 0 chr1 42317043 42317172 -200347181 + A-rich Low_complexity Low_complexity 1 129 0 421 198 0 11 chr1 42317274 42317365 -200346988 + FLAM_C SINE Alu 51 140 -3 1201 71 0 0 chr1 42317377 42317517 -200346836 + AluY SINE Alu 1 140 -171 2343 90 0 0 chr1 42317517 42317817 -200346536 + AluY SINE Alu 5 304 -7 971 284 67 37 chr1 42317931 42318469 -200345884 + L1ME1 LINE L1 5379 5932 -234 1278 209 57 14 chr1 42318571 42318854 -200345499 + AluJo SINE Alu 1 295 -17 2432 64 7 0 chr1 42318961 42319256 -200345097 + AluY SINE Alu 1 297 -14 23 0 0 0 chr1 42319319 42319342 -200345011 + AT_rich Low_complexity Low_complexity 1 23 0 7109 62 6 2 chr1 42320192 42321158 -200343195 + L1PA7 LINE L1 5183 6151 -3 2099 119 12 35 chr1 42322343 42322662 -200341691 + AluSx SINE Alu 1 312 0 633 167 0 0 chr1 42322855 42322951 -200341402 + AluJ/FLAM SINE Alu 6 101 -211 279 0 0 0 chr1 42322954 42322985 -200341368 + (CA)n Simple_repeat Simple_repeat 2 32 0 190 146 36 55 chr1 42323154 42323209 -200341144 - MIR SINE MIR -74 188 135 1710 146 49 3 chr1 42323287 42323574 -200340779 + AluJb SINE Alu 1 300 -12 1367 150 0 75 chr1 42324225 42324372 -200339981 + AluJb SINE Alu 1 123 -189 1510 175 113 0 chr1 42324372 42324646 -200339707 + AluJb SINE Alu 1 305 -7 1367 150 0 75 chr1 42324646 42324751 -200339602 + AluJb SINE Alu 123 234 -78 693 146 0 102 chr1 42324751 42324888 -200339465 - FRAM SINE Alu -57 119 1 2328 98 3 3 chr1 42324929 42325235 -200339118 + AluSx SINE Alu 1 306 -6 2236 108 0 7 chr1 42325447 42325752 -200338601 + AluSg SINE Alu 1 303 -7 2287 79 0 17 chr1 42325752 42326074 -200338279 + AluY SINE Alu 1 311 0 615 219 31 0 chr1 42326365 42326493 -200337860 - FLAM_C SINE Alu -1 132 1 517 270 72 36 chr1 42328396 42328674 -200335679 + L2 LINE L2 3008 3295 -18 2439 76 0 3 chr1 42328991 42329292 -200335061 + AluSp SINE Alu 1 300 -13 2377 99 0 3 chr1 42329593 42329895 -200334458 - AluSx SINE Alu -11 301 1 23 78 0 0 chr1 42330175 42330226 -200334127 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr1 42331449 42331470 -200332883 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 42331639 42331660 -200332693 + AT_rich Low_complexity Low_complexity 1 21 0 490 239 69 0 chr1 42331710 42331840 -200332513 + MIR SINE MIR 57 195 -67 190 191 0 0 chr1 42331957 42331999 -200332354 + L2 LINE L2 3262 3303 -10 27 0 0 0 chr1 42332111 42332138 -200332215 + AT_rich Low_complexity Low_complexity 1 27 0 2158 118 3 0 chr1 42333207 42333504 -200330849 + AluSx SINE Alu 3 300 -12 2253 82 7 13 chr1 42333945 42334248 -200330105 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr1 42334844 42334874 -200329479 + GC_rich Low_complexity Low_complexity 1 30 0 217 222 0 16 chr1 42335022 42335085 -200329268 + C-rich Low_complexity Low_complexity 2 63 0 278 305 116 42 chr1 42335319 42335509 -200328844 - L2 LINE L2 -8 3264 3061 255 290 16 0 chr1 42335506 42335568 -200328785 + L2 LINE L2 3196 3258 -14 * 318 326 82 25 chr1 42335723 42335949 -200328404 - L2 LINE L2 -340 2974 2727 2266 99 3 0 chr1 42335949 42336241 -200328112 + AluSg SINE Alu 1 293 -17 318 326 82 25 chr1 42336241 42336296 -200328057 - L2 LINE L2 -587 2727 2677 484 276 66 17 chr1 42336681 42336862 -200327491 + Charlie2 DNA MER1_type 57 246 -2536 2457 77 3 0 chr1 42337018 42337315 -200327038 + AluY SINE Alu 1 298 -13 1134 82 0 0 chr1 42337330 42337465 -200326888 + AluSq/x SINE Alu 1 135 -177 1598 96 0 0 chr1 42337465 42337664 -200326689 + AluSq SINE Alu 2 200 -113 190 208 21 21 chr1 42338748 42338796 -200325557 - MIR3 SINE MIR -15 193 146 * 531 279 152 19 chr1 42338770 42338931 -200325422 - L3 LINE CR1 -33 1544 1406 2577 30 0 17 chr1 42338931 42339231 -200325122 + AluY SINE Alu 1 295 -16 531 279 152 19 chr1 42339231 42339391 -200324962 - L3 LINE CR1 -171 1406 1180 539 219 158 27 chr1 42339394 42339513 -200324840 + MER3 DNA MER1_type 3 105 -104 2449 82 0 0 chr1 42339513 42339817 -200324536 - AluSc SINE Alu -1 308 5 539 219 158 27 chr1 42339817 42339880 -200324473 + MER3 DNA MER1_type 105 209 0 243 265 133 60 chr1 42340115 42340281 -200324072 - L3 LINE CR1 -711 866 689 222 291 87 39 chr1 42340313 42340440 -200323913 - MIR SINE MIR -26 236 104 231 140 60 0 chr1 42340476 42340526 -200323827 - L3 LINE CR1 -892 685 633 186 337 0 53 chr1 42340592 42340687 -200323666 - L3 LINE CR1 -1052 525 436 443 261 14 29 chr1 42341369 42341507 -200322846 - MIR SINE MIR -56 206 71 353 307 59 20 chr1 42343099 42343252 -200321101 + MIR SINE MIR 63 221 -41 1577 187 17 10 chr1 42343359 42343658 -200320695 + AluJb SINE Alu 1 301 -11 202 365 0 16 chr1 42343698 42343761 -200320592 + MER91 DNA MER1_type 2 63 -77 2380 96 3 0 chr1 42343887 42344190 -200320163 - AluSq SINE Alu -9 304 1 2273 105 0 26 chr1 42344251 42344557 -200319796 - AluSg SINE Alu -12 298 1 2094 127 0 7 chr1 42345149 42345449 -200318904 + AluSg SINE Alu 1 298 -12 396 360 36 28 chr1 42345675 42345925 -200318428 - L2 LINE L2 -22 3250 2999 363 304 54 22 chr1 42346109 42346293 -200318060 - L2 LINE L2 -616 2698 2509 2357 67 0 3 chr1 42346608 42346926 -200317427 + AluY SINE Alu 1 317 0 2391 101 3 0 chr1 42347066 42347372 -200316981 - AluSp SINE Alu -6 307 1 1587 167 44 15 chr1 42347754 42347871 -200316482 + AluJb SINE Alu 12 124 -188 2533 68 0 13 chr1 42347871 42348182 -200316171 + AluY SINE Alu 1 307 -4 1587 167 44 15 chr1 42348182 42348334 -200316019 + AluJb SINE Alu 124 289 -23 578 215 74 0 chr1 42348360 42348481 -200315872 + FLAM_C SINE Alu 1 130 -3 3018 3 0 0 chr1 42348496 42348813 -200315540 + AluYb8 SINE Alu 1 317 -1 1835 121 4 4 chr1 42348950 42349207 -200315146 + AluSx SINE Alu 9 265 -47 623 249 62 51 chr1 42349322 42349412 -200314941 + L2 LINE L2 3005 3092 -221 1543 162 70 3 chr1 42349412 42349696 -200314657 - AluJb SINE Alu -9 303 1 623 249 62 51 chr1 42349696 42349862 -200314491 + L2 LINE L2 3092 3264 -49 240 263 66 0 chr1 42351882 42351958 -200312395 - MIR SINE MIR -32 230 150 1685 196 0 13 chr1 42354249 42354560 -200309793 - AluJb SINE Alu -5 307 1 1942 89 0 0 chr1 42354693 42354930 -200309423 + AluSq SINE Alu 1 237 -76 525 141 0 0 chr1 42354931 42355009 -200309344 - AluS SINE Alu -234 79 2 2424 86 3 0 chr1 42355020 42355321 -200309032 - AluSx SINE Alu -10 302 1 2203 99 3 10 chr1 42355475 42355779 -200308574 - AluSc SINE Alu -7 302 1 1394 129 26 34 chr1 42356054 42356287 -200308066 - AluSg/x SINE Alu -13 299 69 207 0 0 0 chr1 42357405 42357428 -200306925 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2302 76 0 14 chr1 42357428 42357717 -200306636 - AluSx SINE Alu -27 285 1 1110 167 0 6 chr1 42358671 42358845 -200305508 - AluJb SINE Alu -6 306 134 2353 89 7 0 chr1 42358893 42359185 -200305168 - AluSg SINE Alu -16 294 1 480 169 73 8 chr1 42359569 42359693 -200304660 - MIR SINE MIR 0 262 131 * 1079 272 62 43 chr1 42359691 42360125 -200304228 - L2 LINE L2 0 3313 2872 634 216 7 14 chr1 42360125 42360264 -200304089 + MER5A DNA MER1_type 1 138 -51 245 77 26 0 chr1 42360363 42360402 -200303951 + MER5A DNA MER1_type 123 162 -27 995 256 22 18 chr1 42360407 42360557 -200303796 - L2 LINE L2 -448 2866 2713 2059 120 0 30 chr1 42360557 42360858 -200303495 - AluSx SINE Alu -14 298 7 995 256 22 18 chr1 42360858 42360984 -200303369 - L2 LINE L2 -601 2713 2589 2050 105 60 0 chr1 42361497 42361782 -200302571 - AluY SINE Alu -9 302 1 1199 171 43 5 chr1 42362169 42362380 -200301973 - AluJb SINE Alu -17 295 77 2196 113 27 0 chr1 42362449 42362750 -200301603 + AluSx SINE Alu 1 309 -3 2078 160 45 60 chr1 42364129 42364597 -200299756 + MER65C LTR ERV1 1 461 0 21 0 0 0 chr1 42364884 42364905 -200299448 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 42364970 42364993 -200299360 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 350 102 0 85 chr1 42365215 42365274 -200299079 - AluJ/FRAM SINE Alu -25 277 228 373 192 27 0 chr1 42365574 42365647 -200298706 + MER112 DNA MER1_type 1 75 -185 2352 79 0 0 chr1 42365823 42366129 -200298224 - AluSc SINE Alu 0 306 1 2473 94 0 0 chr1 42366206 42366513 -200297840 - AluSc SINE Alu -2 307 1 387 317 91 15 chr1 42366513 42366712 -200297641 + L1MC4a LINE L1 5689 5902 -1906 498 69 14 0 chr1 42366773 42366845 -200297508 + MER41B LTR ERV1 477 549 -86 21 0 0 0 chr1 42366845 42366866 -200297487 + AT_rich Low_complexity Low_complexity 1 21 0 1981 162 3 0 chr1 42367030 42367338 -200297015 + AluJb SINE Alu 1 309 -3 550 256 25 12 chr1 42367828 42367988 -200296365 + MIR SINE MIR 74 235 -27 622 51 13 0 chr1 42368003 42368082 -200296271 + MADE1 DNA Mariner 1 80 0 252 242 15 0 chr1 42368146 42368212 -200296141 - MER117 DNA MER1_type -75 122 56 2576 57 0 0 chr1 42368612 42368908 -200295445 - AluY SINE Alu -15 296 1 1403 173 14 42 chr1 42368933 42369216 -200295137 + AluJo SINE Alu 1 275 -37 2348 88 0 10 chr1 42369357 42369663 -200294690 + AluSq SINE Alu 1 303 -10 1069 163 0 0 chr1 42369663 42369823 -200294530 + AluSc SINE Alu 132 291 -18 980 278 129 21 chr1 42369944 42370379 -200293974 + L1MD1 LINE L1 46 527 -5869 327 192 214 155 chr1 42371505 42371648 -200292705 + L1MD1 LINE L1 556 689 -5707 2130 130 0 34 chr1 42371648 42371850 -200292503 + AluSx SINE Alu 1 189 -123 2078 132 7 3 chr1 42371850 42372146 -200292207 + AluSx SINE Alu 1 297 -15 2130 130 0 34 chr1 42372146 42372265 -200292088 + AluSx SINE Alu 189 311 -1 327 192 214 155 chr1 42372265 42372276 -200292077 + L1MD1 LINE L1 689 698 -5698 2097 131 0 0 chr1 42372276 42372594 -200291759 + AluSx SINE Alu 1 318 0 327 192 214 155 chr1 42372594 42372691 -200291662 + L1MD1 LINE L1 698 828 -5568 2163 135 3 0 chr1 42372691 42373002 -200291351 + AluSx SINE Alu 1 312 0 327 192 214 155 chr1 42373002 42373018 -200291335 + L1MD1 LINE L1 828 842 -5554 180 0 0 0 chr1 42373049 42373069 -200291284 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2223 89 18 0 chr1 42373069 42373383 -200290970 + AluSx SINE Alu 5 323 0 1545 192 35 66 chr1 42373384 42373706 -200290647 + L1MD1 LINE L1 2557 2862 -3353 1452 136 35 119 chr1 42373706 42373918 -200290435 - AluYb8 SINE Alu -2 316 143 2332 112 0 6 chr1 42373918 42374230 -200290123 - AluSg SINE Alu 0 310 1 1452 136 35 119 chr1 42374230 42374362 -200289991 - AluYb8 SINE Alu -175 143 1 1545 192 35 66 chr1 42374362 42374493 -200289860 + L1MD1 LINE L1 2862 2996 -3219 2806 183 49 87 chr1 42374493 42374655 -200289698 + L1M4 LINE L1 4211 4378 -1768 2414 85 0 0 chr1 42374655 42374950 -200289403 - AluSq SINE Alu -18 295 1 2806 183 49 87 chr1 42374950 42375699 -200288654 + L1M4 LINE L1 4378 5087 -1059 2365 89 3 13 chr1 42375699 42376003 -200288350 + AluSg SINE Alu 1 301 -9 2806 183 49 87 chr1 42376003 42376031 -200288322 + L1M4 LINE L1 5087 5115 -1031 708 206 15 0 chr1 42376058 42376189 -200288164 + AluJb SINE Alu 2 134 -178 223 70 23 23 chr1 42376191 42376234 -200288119 + (TA)n Simple_repeat Simple_repeat 1 43 0 22 25 0 25 chr1 42376241 42376260 -200288093 + AT_rich Low_complexity Low_complexity 1 19 -20 2764 23 0 3 chr1 42376260 42376568 -200287785 + AluY SINE Alu 1 307 -4 22 25 0 25 chr1 42376568 42376588 -200287765 + AT_rich Low_complexity Low_complexity 19 39 0 37 23 0 0 chr1 42376716 42376760 -200287593 + AT_rich Low_complexity Low_complexity 1 44 0 701 80 0 0 chr1 42376793 42376881 -200287472 + AluS SINE Alu 2 89 -223 977 187 24 6 chr1 42376881 42377047 -200287306 - AluJo SINE Alu -143 169 1 1947 151 17 10 chr1 42377150 42377449 -200286904 + AluSx SINE Alu 1 301 -11 2261 111 0 3 chr1 42377468 42377766 -200286587 + AluSg SINE Alu 1 297 -13 2643 262 82 23 chr1 42377766 42378075 -200286278 + L1MD1 LINE L1 4087 4376 -1839 2457 74 0 0 chr1 42378075 42378371 -200285982 + AluY SINE Alu 1 296 -15 2643 262 82 23 chr1 42378371 42378940 -200285413 + L1MD1 LINE L1 4376 4910 -1305 2403 85 0 22 chr1 42378940 42379257 -200285096 + AluSq SINE Alu 1 310 -3 2643 262 82 23 chr1 42379257 42379269 -200285084 + L1MD1 LINE L1 4910 4920 -1295 828 189 0 57 chr1 42379269 42379444 -200284909 + FRAM SINE Alu 1 165 -1 2643 262 82 23 chr1 42379444 42379815 -200284538 + L1MD1 LINE L1 4920 5469 -746 3691 166 33 67 chr1 42379847 42379913 -200284440 + L1MD1 LINE L1 5443 5510 -801 2506 85 3 0 chr1 42379913 42380220 -200284133 + AluSp SINE Alu 1 308 -5 3691 166 33 67 chr1 42380220 42380251 -200284102 + L1MD1 LINE L1 5510 5541 -770 4372 126 47 18 chr1 42380251 42381012 -200283341 - LTR1 LTR ERV1 0 785 3 3691 166 33 67 chr1 42381012 42381161 -200283192 + L1MD1 LINE L1 5541 5694 -617 2080 116 4 0 chr1 42381161 42381429 -200282924 + AluSg SINE Alu 20 291 -19 212 31 62 0 chr1 42381429 42381461 -200282892 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 3691 166 33 67 chr1 42381469 42382074 -200282279 + L1MD1 LINE L1 5694 6267 -44 279 197 23 98 chr1 42382074 42382206 -200282147 - Charlie7 DNA MER1_type -2455 157 36 2018 128 0 23 chr1 42382439 42382744 -200281609 - AluSx SINE Alu 0 312 15 264 346 6 25 chr1 42383535 42383697 -200280656 + GA-rich Low_complexity Low_complexity 3 161 0 2293 94 3 3 chr1 42383863 42384161 -200280192 - AluY SINE Alu -13 298 1 336 175 0 25 chr1 42384161 42384241 -200280112 + L1MD3 LINE L1 7918 7995 0 2071 147 38 57 chr1 42384639 42385061 -200279292 + MLT2D LTR ERVL 1 414 0 302 183 105 37 chr1 42385237 42385332 -200279021 + MIR3 SINE MIR 58 160 -48 213 301 11 75 chr1 42386276 42386369 -200277984 + MIR SINE MIR 36 122 -140 2269 152 112 68 chr1 42386378 42386448 -200277905 - L1MB5 LINE L1 0 6180 6115 1728 93 130 22 chr1 42386448 42386718 -200277635 - AluSg1 SINE Alu -10 299 1 2269 152 112 68 chr1 42386718 42387006 -200277347 - L1MB5 LINE L1 -65 6115 5841 2259 111 3 3 chr1 42387006 42387312 -200277041 - AluSx SINE Alu -6 306 1 2269 152 112 68 chr1 42387312 42387445 -200276908 - L1MB5 LINE L1 -339 5841 5715 2513 64 0 29 chr1 42387445 42387758 -200276595 - AluY SINE Alu -6 305 2 2269 152 112 68 chr1 42387758 42387875 -200276478 - L1MB5 LINE L1 -465 5715 5577 489 232 7 70 chr1 42387876 42387971 -200276382 + MIR SINE MIR 130 215 -47 1651 137 111 7 chr1 42387971 42388242 -200276111 + AluSx SINE Alu 1 299 -13 489 232 7 70 chr1 42388242 42388288 -200276065 + MIR SINE MIR 215 262 0 185 116 0 70 chr1 42388293 42388336 -200276017 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 1887 146 3 14 chr1 42389110 42389405 -200274948 - AluJb SINE Alu -12 300 9 1443 191 7 10 chr1 42389657 42389950 -200274403 + AluSq SINE Alu 1 292 -21 493 274 80 20 chr1 42389965 42390224 -200274129 + L1MC/D LINE L1 5482 5759 -374 269 292 97 9 chr1 42390232 42390345 -200274008 - L3 LINE CR1 -170 1407 1285 515 254 0 8 chr1 42390959 42391081 -200273272 - FLAM_C SINE Alu -7 136 16 2457 77 0 0 chr1 42391164 42391463 -200272890 + AluY SINE Alu 1 299 -12 2143 138 7 0 chr1 42391627 42391931 -200272422 - AluSp SINE Alu -7 306 1 2224 92 0 60 chr1 42392179 42392494 -200271859 + AluSx SINE Alu 1 296 -16 552 236 40 117 chr1 42393190 42393516 -200270837 + LTR67 LTR ERVL 251 551 -6 2034 118 0 11 chr1 42393518 42393805 -200270548 + AluSx SINE Alu 1 284 -28 728 117 0 10 chr1 42393833 42393936 -200270417 + U6 snRNA snRNA 1 102 -5 274 288 0 0 chr1 42393987 42394046 -200270307 + polypurine Low_complexity Low_complexity 1 59 0 2586 50 0 0 chr1 42394109 42394409 -200269944 + AluY SINE Alu 1 300 -11 254 303 0 34 chr1 42394614 42394703 -200269650 + MIR SINE MIR 113 198 -64 539 304 63 5 chr1 42394717 42394924 -200269429 - MIR SINE MIR -16 246 28 285 173 0 0 chr1 42395020 42395072 -200269281 + Alu SINE Alu 248 299 -3 2427 83 0 6 chr1 42395093 42395406 -200268947 - AluY SINE Alu 0 311 1 198 0 0 0 chr1 42395407 42395429 -200268924 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 2236 92 4 0 chr1 42395429 42395710 -200268643 - AluSp SINE Alu -31 282 1 29 0 0 0 chr1 42395713 42395742 -200268611 + AT_rich Low_complexity Low_complexity 1 29 0 1840 147 0 43 chr1 42395743 42396069 -200268284 + AluJo SINE Alu 1 312 0 265 291 111 8 chr1 42397282 42397399 -200266954 - MIR SINE MIR -110 152 24 461 179 137 0 chr1 42397835 42397930 -200266423 + MER81 DNA DNA 6 113 -1 331 302 195 0 chr1 42397997 42398146 -200266207 + MER5B DNA MER1_type 1 178 0 2537 70 0 6 chr1 42398204 42398517 -200265836 + AluY SINE Alu 1 311 0 1221 210 30 177 chr1 42398838 42399420 -200264933 + MLT1H1 LTR MaLR 3 485 -70 1902 167 0 0 chr1 42399420 42399720 -200264633 - AluJb SINE Alu -7 305 6 1221 210 30 177 chr1 42399720 42399775 -200264578 + MLT1H1 LTR MaLR 485 546 -9 720 288 113 36 chr1 42399899 42400450 -200263903 + L2 LINE L2 2621 3219 -94 185 247 101 56 chr1 42400522 42400611 -200263742 + MIR SINE MIR 20 112 -96 2085 136 3 0 chr1 42400692 42400987 -200263366 - AluSx SINE Alu -10 302 7 1980 153 10 3 chr1 42401032 42401339 -200263014 + AluSx SINE Alu 2 310 -2 2060 100 10 23 chr1 42401340 42401640 -200262713 + AluSg SINE Alu 1 296 -14 2195 118 0 7 chr1 42401641 42401937 -200262416 + AluSg SINE Alu 1 294 -16 986 175 5 25 chr1 42402052 42402252 -200262101 - Charlie2a DNA MER1_type -1200 1662 1467 824 281 12 24 chr1 42402325 42402574 -200261779 + MIR SINE MIR 3 248 -14 1932 171 0 3 chr1 42402574 42402878 -200261475 - AluJb SINE Alu -9 303 1 1676 184 36 0 chr1 42402889 42403167 -200261186 - AluJb SINE Alu -24 288 1 180 0 26 79 chr1 42403175 42403213 -200261140 + (TTTTTA)n Simple_repeat Simple_repeat 3 38 0 492 149 0 120 chr1 42403707 42403882 -200260471 - AluSq SINE Alu -158 155 2 290 239 34 11 chr1 42403900 42403988 -200260365 - AluSq/x SINE Alu -186 117 28 1903 162 64 6 chr1 42404586 42404913 -200259440 + MER7A DNA MER2_type 2 345 -1 324 214 24 48 chr1 42404914 42404998 -200259355 - MER5B DNA MER1_type -95 83 2 370 287 70 0 chr1 42405425 42405554 -200258799 - L1ME LINE L1 -590 5531 5394 2366 85 7 3 chr1 42405677 42405971 -200258382 + AluSq SINE Alu 1 295 -18 290 263 121 20 chr1 42406154 42406253 -200258100 + MIR SINE MIR 30 138 -70 497 252 9 0 chr1 42406280 42406395 -200257958 + L2 LINE L2 3198 3313 0 3448 143 48 51 chr1 42406727 42406888 -200257465 + MER39 LTR ERV1 1 161 -546 1645 144 86 24 chr1 42406888 42407180 -200257173 + AluSg SINE Alu 1 310 0 3448 143 48 51 chr1 42407180 42407600 -200256753 + MER39 LTR ERV1 161 582 -125 2326 94 3 7 chr1 42407600 42407908 -200256445 - AluSq SINE Alu -6 307 1 3448 143 48 51 chr1 42407908 42407970 -200256383 + MER39 LTR ERV1 582 643 -64 257 210 86 0 chr1 42408003 42408084 -200256269 + MER34 LTR ERV1 455 542 0 1068 274 102 18 chr1 42408864 42409247 -200255106 - MLT1J2 LTR MaLR 0 450 36 560 250 78 29 chr1 42409405 42409609 -200254744 + MIR SINE MIR 31 244 -18 2346 95 0 0 chr1 42410924 42411220 -200253133 + AluSg SINE Alu 1 296 -14 517 222 183 40 chr1 42411269 42411647 -200252706 + L1ME4a LINE L1 5690 6121 0 987 206 29 5 chr1 42412038 42412242 -200252111 + MER3 DNA MER1_type 1 209 0 602 56 9 28 chr1 42412721 42412828 -200251525 + (TA)n Simple_repeat Simple_repeat 2 106 0 1554 158 0 12 chr1 42513270 42513356 -200150997 + AluSq SINE Alu 50 136 -177 2371 59 42 0 chr1 42513356 42513644 -200150709 + AluY SINE Alu 1 300 -11 1554 158 0 12 chr1 42513644 42513810 -200150543 + AluSq SINE Alu 136 299 -14 255 302 0 0 chr1 42515110 42515173 -200149180 - L2 LINE L2 -2 3311 3249 653 111 0 0 chr1 42515234 42515324 -200149029 + 5S rRNA rRNA 1 90 -31 287 227 13 0 chr1 42517175 42517250 -200147103 + L1MC/D LINE L1 5584 5659 -2149 2299 108 7 0 chr1 42517259 42517555 -200146798 + AluSq SINE Alu 2 299 -14 805 343 162 29 chr1 42517637 42518896 -200145457 - L2 LINE L2 0 3272 1852 1790 150 31 7 chr1 42519213 42519500 -200144853 + AluSx SINE Alu 2 295 -17 26 0 0 0 chr1 42519943 42519969 -200144384 + AT_rich Low_complexity Low_complexity 1 26 0 2022 118 36 16 chr1 42519969 42520274 -200144079 - AluSx SINE Alu -1 311 1 541 276 82 21 chr1 42520638 42520968 -200143385 + L1ME4a LINE L1 5552 5901 -220 344 298 106 28 chr1 42520990 42521131 -200143222 + HAL1b LINE L1 1191 1342 -6 608 167 0 0 chr1 42521761 42521851 -200142502 + AluJ/FLAM SINE Alu 2 91 -221 844 192 12 6 chr1 42521851 42522018 -200142335 + AluJo/FRAM SINE Alu 145 312 0 218 176 0 0 chr1 42522018 42522052 -200142301 + polypurine Low_complexity Low_complexity 1 34 0 552 158 5 63 chr1 42522058 42522248 -200142105 + A-rich Low_complexity Low_complexity 2 180 0 416 273 22 7 chr1 42522248 42522522 -200141831 + GA-rich Low_complexity Low_complexity 1 278 0 4678 101 34 11 chr1 42522536 42523048 -200141305 - L1MA2 LINE L1 -4 6300 5765 2318 119 0 22 chr1 42523048 42523367 -200140986 - AluSx SINE Alu 0 312 1 4678 101 34 11 chr1 42523367 42523580 -200140773 - L1MA2 LINE L1 -539 5765 5558 369 320 8 81 chr1 42523582 42523816 -200140537 - L2 LINE L2 -955 2359 2143 246 355 166 7 chr1 42523819 42524126 -200140227 - L2 LINE L2 -1339 1975 1620 849 129 0 43 chr1 42524743 42524883 -200139470 + FLAM_C SINE Alu 6 139 -4 2461 83 0 0 chr1 42525151 42525451 -200138902 + AluSx SINE Alu 1 300 -12 2210 91 3 44 chr1 42525451 42525769 -200138584 + AluY SINE Alu 7 311 0 902 237 75 13 chr1 42527898 42528126 -200136227 - MIR SINE MIR -17 245 4 1120 103 19 0 chr1 42528129 42528285 -200136068 + MER5A DNA MER1_type 17 175 -14 629 254 152 22 chr1 42528396 42528591 -200135762 + MIR SINE MIR 5 234 -28 2529 81 0 0 chr1 42528591 42528898 -200135455 - AluSg SINE Alu -3 307 1 629 254 152 22 chr1 42528898 42528926 -200135427 + MIR SINE MIR 234 257 -5 448 273 49 35 chr1 42529160 42529303 -200135050 - L2 LINE L2 0 3313 3169 266 106 191 0 chr1 42529318 42529365 -200134988 + FLAM SINE Alu 71 126 -7 1733 172 0 47 chr1 42529375 42529695 -200134658 + AluJb SINE Alu 1 305 -7 2424 83 7 0 chr1 42530013 42530315 -200134038 + AluSx SINE Alu 1 304 -8 1108 164 0 0 chr1 42530315 42530480 -200133873 + AluY SINE Alu 133 297 -14 2325 113 3 0 chr1 42530773 42531083 -200133270 - AluSx SINE Alu 0 312 2 1294 116 0 0 chr1 42531095 42531267 -200133086 - AluSg/x SINE Alu -7 303 132 2462 81 0 0 chr1 42531267 42531564 -200132789 - AluSx SINE Alu -15 297 1 1117 80 11 70 chr1 42531564 42531709 -200132644 - L1MA8 LINE L1 -325 5966 5833 1872 139 6 61 chr1 42531709 42532039 -200132314 - AluJo SINE Alu 0 312 1 1117 80 11 70 chr1 42532039 42532080 -200132273 - L1MA8 LINE L1 -458 5833 5791 1015 282 16 0 chr1 42532294 42532546 -200131807 + MIR SINE MIR 1 256 -6 208 366 12 12 chr1 42532612 42532694 -200131659 + L2 LINE L2 2551 2632 -682 387 60 0 0 chr1 42532798 42532848 -200131505 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 2306 74 0 11 chr1 42532848 42533132 -200131221 - AluSp SINE Alu -32 281 1 227 372 11 11 chr1 42533210 42533304 -200131049 + MIR SINE MIR 20 113 -95 * 406 343 6 56 chr1 42533295 42533473 -200130880 + L2 LINE L2 3091 3259 -13 288 0 0 0 chr1 42533473 42533505 -200130848 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr1 42534143 42534164 -200130189 + GC_rich Low_complexity Low_complexity 1 21 0 1128 151 5 154 chr1 42534339 42534399 -200129954 + L1MD2 LINE L1 5469 5536 -823 2458 86 3 0 chr1 42534399 42534701 -200129652 - AluSg SINE Alu -7 303 1 1128 151 5 154 chr1 42534701 42534806 -200129547 + L1MD2 LINE L1 5536 5655 -704 1506 174 0 23 chr1 42534806 42535065 -200129288 - AluJo SINE Alu -59 253 1 1128 151 5 154 chr1 42535065 42535281 -200129072 + L1MD2 LINE L1 5655 5794 -565 530 168 36 90 chr1 42535302 42535374 -200128979 + MLT1C LTR MaLR 20 94 -411 2250 88 20 0 chr1 42535374 42535670 -200128683 + AluSp SINE Alu 1 302 -11 530 168 36 90 chr1 42535670 42535764 -200128589 + MLT1C LTR MaLR 94 177 -328 913 152 5 99 chr1 42535789 42535830 -200128523 - AluJo SINE Alu -139 173 130 2078 129 7 0 chr1 42535830 42536125 -200128228 - AluSx SINE Alu -15 297 1 913 152 5 99 chr1 42536125 42536274 -200128079 - AluJo SINE Alu -182 130 1 775 230 137 32 chr1 42536279 42536557 -200127796 + MLT1C LTR MaLR 161 467 0 1219 191 89 39 chr1 42536557 42537049 -200127304 + L1MD2 LINE L1 5792 6358 -1 862 148 0 22 chr1 42537053 42537188 -200127165 + AluJo/FLAM SINE Alu 2 133 -169 2191 109 3 16 chr1 42537190 42537493 -200126860 + AluSg SINE Alu 1 299 -11 2226 102 0 23 chr1 42537493 42537623 -200126730 + AluSg SINE Alu 5 136 -174 2321 107 3 7 chr1 42537623 42537933 -200126420 + AluSx SINE Alu 1 309 -3 2226 102 0 23 chr1 42537933 42538106 -200126247 + AluSg SINE Alu 136 301 -9 440 206 151 8 chr1 42538106 42538232 -200126121 + L1ME1 LINE L1 6023 6166 0 1269 98 10 36 chr1 42538239 42538432 -200125921 + AluSg/x SINE Alu 123 310 0 190 318 108 16 chr1 42538856 42538985 -200125368 + L2 LINE L2 3118 3258 -14 1948 104 0 68 chr1 42539313 42539493 -200124860 - AluSx SINE Alu -15 297 145 2309 120 0 0 chr1 42539493 42539801 -200124552 - AluSg SINE Alu -1 309 2 1948 104 0 68 chr1 42539801 42539927 -200124426 - AluSx SINE Alu -167 145 12 328 212 18 26 chr1 42539938 42539986 -200124367 + Charlie5 DNA MER1_type 2391 2438 -186 2339 81 7 0 chr1 42539986 42540282 -200124071 - AluY SINE Alu -13 298 1 328 212 18 26 chr1 42540282 42540346 -200124007 + Charlie5 DNA MER1_type 2438 2502 -122 1294 232 43 0 chr1 42540370 42540672 -200123681 - L1MC1 LINE L1 -56 6277 5963 2589 71 0 0 chr1 42540712 42541021 -200123332 - AluY SINE Alu -2 309 1 2083 134 0 0 chr1 42541072 42541402 -200122951 + AluSx SINE Alu 1 330 0 1601 201 20 3 chr1 42541413 42541706 -200122647 + AluJo SINE Alu 1 298 -14 583 315 116 14 chr1 42541772 42542154 -200122199 - L2 LINE L2 -129 3184 2752 2327 99 3 0 chr1 42542178 42542480 -200121873 - AluSp SINE Alu -10 303 1 529 129 0 0 chr1 42542482 42542552 -200121801 - AluS SINE Alu -242 71 2 1156 257 57 61 chr1 42542554 42542805 -200121548 - L2 LINE L2 -599 2715 2465 2436 103 0 0 chr1 42542805 42543107 -200121246 + AluSq SINE Alu 1 302 -11 1156 257 57 61 chr1 42543107 42543345 -200121008 - L2 LINE L2 -849 2465 2228 2271 122 0 3 chr1 42543357 42543669 -200120684 + AluSx SINE Alu 2 312 0 563 156 4 3 chr1 42543986 42544214 -200120139 - AluSc SINE Alu -1 308 7 5751 86 40 8 chr1 42544219 42545099 -200119254 - MER4B-int LTR ERV1 -615 4400 3493 1299 145 0 0 chr1 42545111 42545297 -200119056 + AluSx SINE Alu 11 196 -116 447 90 0 30 chr1 42545299 42545366 -200118987 + AluSq/x SINE Alu 72 136 -176 2306 120 3 0 chr1 42545366 42545674 -200118679 + AluSx SINE Alu 1 309 -3 1982 128 6 42 chr1 42545674 42545815 -200118538 + AluSc SINE Alu 1 145 -164 2351 82 0 3 chr1 42545815 42546109 -200118244 + AluY SINE Alu 1 293 -18 1982 128 6 42 chr1 42546109 42546280 -200118073 + AluSc SINE Alu 145 302 -7 6072 74 51 63 chr1 42546280 42546907 -200117446 - MER4B-int LTR ERV1 -1607 4991 4358 2454 76 0 3 chr1 42546907 42547211 -200117142 + AluY SINE Alu 1 303 -8 6072 74 51 63 chr1 42547211 42547445 -200116908 - MER4B-int LTR ERV1 -2240 4358 4123 2279 96 3 0 chr1 42547445 42547738 -200116615 - AluSp SINE Alu -17 296 3 6072 74 51 63 chr1 42547738 42547841 -200116512 - MER4B-int LTR ERV1 -2475 4123 4038 2392 85 0 3 chr1 42547841 42548135 -200116218 - AluSq SINE Alu -20 293 1 6072 74 51 63 chr1 42548135 42548255 -200116098 - MER4B-int LTR ERV1 -2560 4038 3918 741 113 61 104 chr1 42548252 42548289 -200116064 - MER4B-int LTR ERV1 -4570 2188 2151 * 2325 106 3 0 chr1 42548289 42548591 -200115762 - AluSx SINE Alu -9 303 1 741 113 61 104 chr1 42548591 42548765 -200115588 - MER4B-int LTR ERV1 -4607 2151 1986 2516 68 0 0 chr1 42548766 42549073 -200115280 - AluY SINE Alu -4 307 1 691 79 0 206 chr1 42549074 42549239 -200115114 - AluSg SINE Alu -178 132 2 250 287 57 41 chr1 42549475 42549597 -200114756 + L2 LINE L2 3144 3267 -5 638 235 0 22 chr1 42550101 42550237 -200114116 - FLAM_C SINE Alu -3 140 8 180 0 0 0 chr1 42550248 42550268 -200114085 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2160 87 22 0 chr1 42550270 42550547 -200113806 - AluSq SINE Alu -29 284 2 2428 83 3 10 chr1 42550628 42550942 -200113411 - AluSp SINE Alu 0 313 2 1320 111 0 0 chr1 42550954 42551126 -200113227 - AluSg/x SINE Alu -7 305 134 2462 81 0 0 chr1 42551126 42551423 -200112930 - AluSx SINE Alu -15 297 1 1117 80 11 70 chr1 42551423 42551568 -200112785 - L1MA8 LINE L1 -325 5966 5833 1872 139 6 61 chr1 42551568 42551898 -200112455 - AluJo SINE Alu 0 312 1 1117 80 11 70 chr1 42551898 42551939 -200112414 - L1MA8 LINE L1 -458 5833 5791 1015 282 16 0 chr1 42552153 42552405 -200111948 + MIR SINE MIR 1 256 -6 208 366 12 12 chr1 42552471 42552553 -200111800 + L2 LINE L2 2551 2632 -682 387 60 0 0 chr1 42552657 42552707 -200111646 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 2306 74 0 11 chr1 42552707 42552991 -200111362 - AluSp SINE Alu -32 281 1 227 372 11 11 chr1 42553069 42553163 -200111190 + MIR SINE MIR 20 113 -95 * 406 343 6 56 chr1 42553154 42553332 -200111021 + L2 LINE L2 3091 3259 -13 288 0 0 0 chr1 42553332 42553364 -200110989 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr1 42554002 42554023 -200110330 + GC_rich Low_complexity Low_complexity 1 21 0 265 277 11 43 chr1 42554108 42554292 -200110061 + G-rich Low_complexity Low_complexity 3 180 0 24 32 0 0 chr1 42554332 42554363 -200109990 + GC_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 42554429 42554453 -200109900 + GC_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr1 42554583 42554629 -200109724 + GC_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr1 42554682 42554704 -200109649 + GC_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr1 42554937 42554987 -200109366 + GC_rich Low_complexity Low_complexity 1 50 0 717 240 62 40 chr1 42556199 42556424 -200107929 - MIR SINE MIR -6 256 27 189 351 0 0 chr1 42556540 42556597 -200107756 - MIR SINE MIR -50 212 156 861 240 36 48 chr1 42556609 42556859 -200107494 - MIR SINE MIR 0 262 16 285 241 43 86 chr1 42556921 42557037 -200107316 - MIR SINE MIR -44 218 108 318 278 62 87 chr1 42557596 42557837 -200106516 - L1MEc LINE L1 -5186 1210 976 612 329 69 9 chr1 42558024 42558240 -200106113 + MIR SINE MIR 2 230 -32 204 311 140 6 chr1 42558639 42558803 -200105550 + L2 LINE L2 2701 2886 -428 245 217 217 12 chr1 42560647 42560730 -200103623 - MIR SINE MIR -84 124 25 2310 94 0 36 chr1 42560731 42560921 -200103432 - AluSx SINE Alu -15 297 121 2281 72 7 36 chr1 42560921 42561227 -200103126 - AluY SINE Alu -14 297 1 2310 94 0 36 chr1 42561227 42561344 -200103009 - AluSx SINE Alu -191 121 1 625 176 0 50 chr1 42561738 42561857 -200102496 + MER91B DNA MER1_type 26 138 -52 200 328 172 0 chr1 42561921 42562037 -200102316 - L2 LINE L2 0 3272 3137 680 159 93 0 chr1 42562048 42562155 -200102198 + AluJb SINE Alu 2 118 -194 295 158 0 53 chr1 42562660 42562717 -200101636 - L2 LINE L2 0 3272 3219 313 261 0 0 chr1 42562744 42562809 -200101544 + MIR SINE MIR 90 154 -108 474 313 65 14 chr1 42564242 42564459 -200099894 + MIR SINE MIR 20 247 -15 2182 87 24 21 chr1 42564459 42564747 -200099606 - AluSc SINE Alu -20 289 1 202 329 0 0 chr1 42564780 42564853 -200099500 + (TTCA)n Simple_repeat Simple_repeat 3 75 0 401 254 286 0 chr1 42565345 42565411 -200098942 - MIR SINE MIR -45 217 116 207 313 71 18 chr1 42565411 42565523 -200098830 + MER91C DNA MER1_type 1 118 -22 409 150 80 40 chr1 42565591 42565691 -200098662 - L1MC5 LINE L1 -53 7908 7805 2318 97 0 10 chr1 42565725 42566036 -200098317 - AluSg1 SINE Alu 0 309 2 1053 157 43 24 chr1 42566045 42566255 -200098098 - MER21B LTR ERV1 -22 841 628 1289 117 0 0 chr1 42566256 42566435 -200097918 - AluSp SINE Alu -1 312 134 2523 83 0 0 chr1 42566435 42566737 -200097616 - AluSc SINE Alu -7 302 1 2200 90 35 0 chr1 42566743 42567031 -200097322 - AluSx SINE Alu -14 298 1 358 176 27 40 chr1 42567039 42567113 -200097240 - MER21B LTR ERV1 -226 637 565 1349 158 174 19 chr1 42567116 42567375 -200096978 + AluSg SINE Alu 1 299 -1 2494 69 13 0 chr1 42567393 42567696 -200096657 + AluSp SINE Alu 1 307 -6 952 183 6 0 chr1 42567699 42567863 -200096490 + AluJo/FRAM SINE Alu 137 301 -1 1798 159 69 134 chr1 42567875 42568234 -200096119 - MER21A LTR ERV1 -385 546 165 2578 68 0 7 chr1 42568234 42568541 -200095812 + AluSc SINE Alu 1 305 -4 1806 143 28 7 chr1 42568551 42568838 -200095515 + AluJo SINE Alu 1 293 -19 1810 165 0 48 chr1 42568839 42569155 -200095198 + AluJb SINE Alu 1 301 -11 1798 159 69 134 chr1 42569155 42569349 -200095004 - MER21A LTR ERV1 -774 157 17 1174 135 6 0 chr1 42569395 42569558 -200094795 + AluSg/x SINE Alu 133 296 -14 599 151 0 0 chr1 42569598 42569684 -200094669 - FRAM SINE Alu -19 157 72 2449 90 0 0 chr1 42569827 42570128 -200094225 - AluSx SINE Alu -11 301 1 1889 176 0 0 chr1 42570397 42570686 -200093667 + AluJb SINE Alu 7 295 -17 502 302 117 0 chr1 42571161 42571340 -200093013 - MIR SINE MIR -4 258 59 2401 88 0 3 chr1 42572112 42572408 -200091945 - AluSq SINE Alu -18 295 1 448 273 49 35 chr1 42572670 42572813 -200091540 - L2 LINE L2 0 3313 3169 266 106 191 0 chr1 42572828 42572875 -200091478 + FLAM SINE Alu 71 126 -7 1733 172 0 47 chr1 42572885 42573205 -200091148 + AluJb SINE Alu 1 305 -7 2212 93 0 0 chr1 42573523 42573802 -200090551 + AluSx SINE Alu 1 279 -33 188 22 0 89 chr1 42573805 42573850 -200090503 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 864 138 0 0 chr1 42573890 42574006 -200090347 - FLAM_C SINE Alu -21 122 7 2439 91 0 0 chr1 42574026 42574323 -200090030 + AluSx SINE Alu 1 297 -15 237 132 0 0 chr1 42574323 42574361 -200089992 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 850 138 0 0 chr1 42574361 42574477 -200089876 - FLAM_C SINE Alu -21 122 7 2410 81 0 10 chr1 42574497 42574804 -200089549 + AluY SINE Alu 1 304 -7 439 122 12 12 chr1 42574806 42574849 -200089504 + (GA)n Simple_repeat Simple_repeat 1 46 -36 2471 47 13 3 chr1 42574849 42575149 -200089204 + AluY SINE Alu 1 303 -8 439 122 12 12 chr1 42575149 42575187 -200089166 + (GA)n Simple_repeat Simple_repeat 45 82 0 684 261 99 50 chr1 42575203 42575525 -200088828 - L2 LINE L2 -15 3257 2920 21 0 0 0 chr1 42578279 42578300 -200086053 + GC_rich Low_complexity Low_complexity 1 21 0 215 261 15 52 chr1 42578311 42578445 -200085908 + (CGGGG)n Simple_repeat Simple_repeat 2 130 0 214 313 78 96 chr1 42581291 42581457 -200082896 - L2 LINE L2 -86 3186 3024 824 75 9 0 chr1 42581464 42581571 -200082782 - AluY SINE Alu -8 303 196 405 220 85 50 chr1 42582050 42582191 -200082162 + MIR SINE MIR 49 194 -68 2116 112 0 24 chr1 42582220 42582532 -200081821 - AluSg SINE Alu 0 305 1 183 261 204 0 chr1 42582621 42582709 -200081644 - MIR SINE MIR -67 195 90 180 77 0 0 chr1 42582976 42583002 -200081351 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 22 35 0 0 chr1 42583015 42583044 -200081309 + AT_rich Low_complexity Low_complexity 1 29 0 2033 144 0 10 chr1 42583189 42583495 -200080858 - AluJb SINE Alu -9 303 1 1201 206 48 48 chr1 42584171 42584324 -200080029 - AluJo SINE Alu -23 289 137 279 0 0 0 chr1 42584324 42584355 -200079998 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2431 53 3 0 chr1 42584355 42584637 -200079716 - AluY SINE Alu -27 284 2 1201 206 48 48 chr1 42584637 42584754 -200079599 - AluJo SINE Alu -173 139 18 2333 101 7 3 chr1 42585045 42585341 -200079012 - AluSg SINE Alu -13 297 1 1719 159 19 11 chr1 42585381 42585651 -200078702 + AluSx SINE Alu 24 295 -17 937 158 0 0 chr1 42585818 42585957 -200078396 + FRAM SINE Alu 25 163 -13 2314 113 0 0 chr1 42586711 42587004 -200077349 + AluSx SINE Alu 1 293 -19 276 81 0 0 chr1 42587225 42587262 -200077091 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 836 103 19 0 chr1 42587427 42587534 -200076819 + FRAM SINE Alu 24 132 -44 1060 293 175 56 chr1 42587581 42589330 -200075023 - L2 LINE L2 -10 3303 1353 366 107 0 0 chr1 42589331 42589387 -200074966 + (TG)n Simple_repeat Simple_repeat 2 57 0 306 0 0 0 chr1 42590489 42590523 -200073830 + (TG)n Simple_repeat Simple_repeat 2 35 0 2414 64 7 3 chr1 42591996 42592294 -200072059 + AluSp SINE Alu 5 303 -10 207 0 0 0 chr1 42592375 42592398 -200071955 + (TTG)n Simple_repeat Simple_repeat 2 24 0 259 353 0 44 chr1 42592575 42592711 -200071642 + L2 LINE L2 2305 2434 -880 2381 93 3 13 chr1 42592829 42593140 -200071213 - AluSp SINE Alu -5 308 1 2067 108 11 0 chr1 42593340 42593618 -200070735 - AluSg SINE Alu -29 281 1 1754 46 17 8 chr1 42593647 42593884 -200070469 - L1MA1 LINE L1 0 6302 6064 680 125 29 0 chr1 42593896 42594000 -200070353 - U6 snRNA snRNA 0 107 1 377 256 60 17 chr1 42594000 42594117 -200070236 + L2 LINE L2 3192 3313 0 180 309 88 0 chr1 42594131 42594199 -200070154 - MIR3 SINE MIR -51 157 84 606 261 113 15 chr1 42594349 42594386 -200069967 - MIR SINE MIR -6 256 224 1983 127 10 3 chr1 42594386 42594704 -200069649 - AluSx SINE Alu 0 312 1 606 261 113 15 chr1 42594704 42594869 -200069484 - MIR SINE MIR -38 224 34 2300 110 0 3 chr1 42595209 42595509 -200068844 - AluSg1 SINE Alu -10 299 1 181 132 237 0 chr1 42596106 42596144 -200068209 + MER5A DNA MER1_type 17 63 -126 2326 109 7 0 chr1 42596160 42596464 -200067889 - AluSx SINE Alu -6 306 1 1951 123 0 69 chr1 42596500 42596670 -200067683 - AluJb SINE Alu -17 295 156 2136 110 3 58 chr1 42596670 42596996 -200067357 - AluSg SINE Alu -2 308 1 1951 123 0 69 chr1 42596996 42597142 -200067211 - AluJb SINE Alu -156 156 1 187 129 32 0 chr1 42597162 42597193 -200067160 + MER5A DNA MER1_type 156 187 -2 615 235 59 12 chr1 42597208 42597378 -200066975 + MIR SINE MIR 14 191 -71 905 251 53 18 chr1 42597661 42597888 -200066465 - MIR SINE MIR -7 255 21 431 261 35 9 chr1 42597930 42598045 -200066308 + MIR SINE MIR 34 151 -57 746 267 45 10 chr1 42598252 42598454 -200065899 + MIR SINE MIR 50 258 -4 2163 93 0 4 chr1 42598686 42598966 -200065387 + AluSx SINE Alu 21 299 -13 234 61 30 0 chr1 42599014 42599047 -200065306 + Alu SINE Alu 82 115 -18 1814 161 133 3 chr1 42599060 42599452 -200064901 - MLT1C LTR MaLR -24 443 1 2261 104 9 25 chr1 42599462 42599778 -200064575 + AluSx SINE Alu 1 311 -1 1835 139 38 7 chr1 42599906 42600194 -200064159 + AluSx SINE Alu 1 297 -15 754 258 50 50 chr1 42600312 42600572 -200063781 - MIR SINE MIR 0 262 3 241 201 65 130 chr1 42600870 42601039 -200063314 - L1ME4a LINE L1 0 6121 5964 908 190 74 0 chr1 42601167 42601330 -200063023 - FAM SINE Alu 0 175 1 2365 69 21 10 chr1 42601377 42601668 -200062685 + AluY SINE Alu 1 294 -17 247 263 0 18 chr1 42601971 42602028 -200062325 + L2 LINE L2 3213 3268 -4 2306 87 3 34 chr1 42603787 42604108 -200060245 - AluSq SINE Alu -2 311 1 1937 150 3 31 chr1 42604108 42604428 -200059925 - AluJo SINE Alu 0 312 2 288 358 88 7 chr1 42604457 42604605 -200059748 + L2 LINE L2 3109 3268 -4 689 210 0 0 chr1 42604756 42604902 -200059451 - FLAM_A SINE Alu 0 146 1 266 85 0 21 chr1 42606467 42606514 -200057839 + (TCC)n Simple_repeat Simple_repeat 3 48 0 1070 137 159 4 chr1 42606530 42606763 -200057590 - L1MA9 LINE L1 0 6312 6044 2443 48 0 19 chr1 42606991 42607300 -200057053 - AluY SINE Alu -8 303 1 567 251 62 56 chr1 42607490 42607669 -200056684 + MIR SINE MIR 56 235 -27 2798 111 25 7 chr1 42607722 42608163 -200056190 - L1MB3 LINE L1 0 6183 5735 1827 129 32 7 chr1 42608213 42608492 -200055861 - AluSg SINE Alu -24 286 1 292 292 0 0 chr1 42608963 42609035 -200055318 + (CATA)n Simple_repeat Simple_repeat 4 75 0 1803 163 3 0 chr1 42610003 42610014 -200054339 - AluSx SINE Alu -17 295 286 219 36 0 0 chr1 42610014 42610042 -200054311 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1803 163 3 0 chr1 42610042 42610324 -200054029 - AluSx SINE Alu -26 286 1 1627 188 7 0 chr1 42610324 42610616 -200053737 - AluJo SINE Alu -14 298 5 25 0 0 0 chr1 42610617 42610642 -200053711 + AT_rich Low_complexity Low_complexity 1 25 0 2185 102 3 0 chr1 42610746 42611050 -200053303 + AluSx SINE Alu 1 305 -7 189 74 0 0 chr1 42611163 42611190 -200053163 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 2257 72 0 3 chr1 42611256 42611547 -200052806 + AluY SINE Alu 1 290 -21 466 273 27 20 chr1 42611804 42611954 -200052399 - MER117 DNA MER1_type -43 154 4 201 74 0 0 chr1 42612067 42612094 -200052259 + (TG)n Simple_repeat Simple_repeat 1 27 0 249 170 0 19 chr1 42612096 42612149 -200052204 - AluSp/q SINE Alu 0 303 252 255 114 0 0 chr1 42612254 42612298 -200052055 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 2044 147 0 0 chr1 42612300 42612612 -200051741 + AluSx SINE Alu 1 312 0 6216 140 14 33 chr1 42612618 42613078 -200051275 + L1PB1 LINE L1 4358 4825 -1326 2075 102 0 3 chr1 42613078 42613400 -200050953 + AluSx SINE Alu 1 321 0 6216 140 14 33 chr1 42613400 42614090 -200050263 + L1PB1 LINE L1 4825 5526 -625 2133 62 7 7 chr1 42614090 42614427 -200049926 + AluY SINE Alu 1 311 0 2030 128 0 3 chr1 42614427 42614731 -200049622 + AluSx SINE Alu 4 306 -6 6216 140 14 33 chr1 42614731 42615025 -200049328 + L1PB1 LINE L1 5525 5823 -328 2185 83 0 13 chr1 42615025 42615326 -200049027 + AluSg SINE Alu 3 299 -11 6216 140 14 33 chr1 42615326 42615701 -200048652 + L1PB1 LINE L1 5823 6145 -6 2261 78 3 10 chr1 42617391 42617700 -200046653 - AluSg1 SINE Alu -2 307 1 198 204 0 45 chr1 42617874 42617918 -200046435 + L2 LINE L2 3140 3181 -91 354 287 184 11 chr1 42618229 42618490 -200045863 + LTR52 LTR ERVL 16 321 -100 2158 97 3 0 chr1 42618496 42618795 -200045558 - AluSc SINE Alu -9 300 1 923 103 0 0 chr1 42618814 42618940 -200045413 - AluSq/x SINE Alu -187 126 1 240 193 171 11 chr1 42618945 42619033 -200045320 + LTR52 LTR ERVL 319 420 -1 1985 90 30 33 chr1 42619361 42619662 -200044691 + AluSq SINE Alu 1 300 -13 589 180 20 0 chr1 42619707 42619807 -200044546 - FRAM SINE Alu -16 160 59 2302 76 3 0 chr1 42620059 42620350 -200044003 - AluSp SINE Alu -21 292 1 2452 56 0 3 chr1 42620724 42621029 -200043324 - AluY SINE Alu -7 304 1 2418 55 10 10 chr1 42621539 42621848 -200042505 + AluY SINE Alu 1 309 -2 571 203 128 8 chr1 42621942 42622075 -200042278 + FRAM SINE Alu 17 165 -11 2231 84 0 23 chr1 42622110 42622419 -200041934 + AluSq SINE Alu 1 302 -11 1460 166 58 22 chr1 42622437 42622715 -200041638 - AluJb SINE Alu -24 288 1 2154 118 0 3 chr1 42623030 42623343 -200041010 + AluSx SINE Alu 1 312 0 2080 91 14 10 chr1 42623524 42623820 -200040533 - AluSq SINE Alu -16 297 1 810 105 128 8 chr1 42624699 42624832 -200039521 + AluSc SINE Alu 2 150 -159 1130 133 22 49 chr1 42624858 42625084 -200039269 + AluSq SINE Alu 85 304 -9 825 146 0 0 chr1 42625088 42625211 -200039142 + FLAM_C SINE Alu 1 123 -20 2173 95 3 10 chr1 42625220 42625525 -200038828 + AluSp SINE Alu 1 303 -10 790 150 150 62 chr1 42625541 42625734 -200038619 + MER46A DNA MER2_type 27 236 0 1864 108 19 46 chr1 42625940 42626109 -200038244 - AluSx SINE Alu -13 299 140 2208 121 0 0 chr1 42626109 42626422 -200037931 - AluSq SINE Alu 0 313 1 1864 108 19 46 chr1 42626422 42626559 -200037794 - AluSx SINE Alu -172 140 1 1822 98 0 4 chr1 42627191 42627445 -200036908 + AluSq SINE Alu 9 261 -52 1542 71 0 5 chr1 42627555 42627753 -200036600 - AluSq SINE Alu -116 197 1 5236 105 33 29 chr1 42627827 42627840 -200036513 + HSMAR2 DNA Mariner 330 341 -961 2096 121 0 3 chr1 42627840 42628145 -200036208 + AluSx SINE Alu 1 304 -8 5236 105 33 29 chr1 42628145 42628847 -200035506 + HSMAR2 DNA Mariner 341 1051 -251 2187 106 0 3 chr1 42628847 42629150 -200035203 - AluSq SINE Alu -11 302 1 5236 105 33 29 chr1 42629150 42629230 -200035123 + HSMAR2 DNA Mariner 1051 1129 -173 294 143 41 0 chr1 42629222 42629271 -200035082 + LTR43 LTR ERV1 405 455 -147 * 1609 143 10 47 chr1 42629291 42629437 -200034916 + AluJo SINE Alu 1 132 -180 2231 98 0 13 chr1 42629437 42629742 -200034611 + AluSc SINE Alu 1 301 -8 1609 143 10 47 chr1 42629742 42629896 -200034457 + AluJo SINE Alu 132 290 -22 828 179 12 25 chr1 42629907 42630069 -200034284 + AluJb SINE Alu 127 286 -26 516 16 0 0 chr1 42630077 42630138 -200034215 + (TA)n Simple_repeat Simple_repeat 2 62 0 639 261 41 98 chr1 42630340 42630523 -200033830 - MIR SINE MIR -20 242 75 2251 84 0 6 chr1 42630523 42630834 -200033519 - AluSc SINE Alu 0 309 1 639 261 41 98 chr1 42630834 42630895 -200033458 - MIR SINE MIR -187 75 12 200 185 19 0 chr1 42631064 42631118 -200033235 + CT-rich Low_complexity Low_complexity 1 55 0 1691 149 3 21 chr1 42631122 42631410 -200032943 - AluJb SINE Alu -29 283 1 182 320 173 15 chr1 42631815 42632012 -200032341 + L2 LINE L2 2748 2975 -339 2060 83 0 10 chr1 42632257 42632547 -200031806 - AluSp SINE Alu -22 291 5 938 113 33 13 chr1 42632761 42632912 -200031441 - FRAM SINE Alu -15 161 8 225 0 0 0 chr1 42632919 42632944 -200031409 + (T)n Simple_repeat Simple_repeat 1 25 0 2256 100 3 6 chr1 42632988 42633299 -200031054 - AluSx SINE Alu -2 310 1 1276 103 0 16 chr1 42633329 42633513 -200030840 + AluSx SINE Alu 1 181 -131 1774 139 24 3 chr1 42634345 42634633 -200029720 + AluSg SINE Alu 5 298 -12 2101 117 10 0 chr1 42634761 42635061 -200029292 + AluSq SINE Alu 1 303 -10 2201 103 3 0 chr1 42635621 42635922 -200028431 - AluSp SINE Alu -11 302 1 630 207 81 46 chr1 42635960 42636134 -200028219 - MER58A DNA MER1_type 0 224 45 339 296 44 49 chr1 42636385 42636632 -200027721 - MIR SINE MIR -8 254 10 1880 99 18 7 chr1 42636686 42636968 -200027385 - AluSq SINE Alu -18 295 11 2217 83 3 7 chr1 42638581 42638881 -200025472 - AluSq SINE Alu -14 299 1 220 184 0 0 chr1 42639484 42639522 -200024831 + (CA)n Simple_repeat Simple_repeat 2 39 0 755 244 52 33 chr1 42640165 42640386 -200023967 + MIR SINE MIR 15 231 -31 2361 70 0 0 chr1 42641158 42641456 -200022897 - AluY SINE Alu -13 298 1 344 225 0 0 chr1 42641476 42641547 -200022806 - MER103 DNA DNA -75 91 21 425 226 23 53 chr1 42642201 42642334 -200022019 + FLAM_C SINE Alu 3 131 -2 1857 103 82 7 chr1 42642339 42642621 -200021732 + AluSp SINE Alu 1 303 -10 1954 121 34 0 chr1 42642958 42643256 -200021097 + AluSp SINE Alu 1 308 -5 1984 108 9 19 chr1 42643256 42643572 -200020781 + AluSp SINE Alu 1 313 0 1966 114 23 13 chr1 42643722 42644059 -200020294 + AluSx SINE Alu 1 340 0 201 325 96 75 chr1 42644304 42644415 -200019938 + L3 LINE CR1 1230 1337 -240 862 233 5 9 chr1 42644415 42644625 -200019728 - L1MB5 LINE L1 -9 6165 5957 201 325 96 75 chr1 42644625 42644845 -200019508 + L3 LINE CR1 1337 1568 -9 796 161 37 101 chr1 42644890 42645018 -200019335 + MER3 DNA MER1_type 6 116 -93 1607 113 121 15 chr1 42645018 42645283 -200019070 - AluSg SINE Alu -17 293 1 796 161 37 101 chr1 42645283 42645372 -200018981 + MER3 DNA MER1_type 116 209 0 210 262 12 36 chr1 42645711 42645795 -200018558 + MER5C DNA MER1_type 131 212 -112 543 156 62 0 chr1 42646270 42646366 -200017987 + FLAM_A SINE Alu 23 124 -18 251 200 191 57 chr1 42646814 42646919 -200017434 + MIR SINE MIR 57 175 -87 2007 125 0 10 chr1 42647076 42647388 -200016965 + AluSc SINE Alu 1 309 0 697 111 137 0 chr1 42647402 42647519 -200016834 + FLAM_C SINE Alu 1 133 0 1873 88 38 0 chr1 42647529 42647792 -200016561 + AluSx SINE Alu 11 283 -29 2019 128 0 0 chr1 42648355 42648653 -200015700 - AluSq SINE Alu -15 298 1 2218 86 0 16 chr1 42649171 42649485 -200014868 + AluSg SINE Alu 1 309 -1 2107 103 0 0 chr1 42649491 42649782 -200014571 + AluSx SINE Alu 9 299 -13 2199 83 0 43 chr1 42649785 42650109 -200014244 + AluY SINE Alu 1 310 -1 245 322 0 46 chr1 42650136 42650223 -200014130 + MIR3 SINE MIR 3 85 -123 1720 148 14 7 chr1 42650246 42650530 -200013823 - AluJb SINE Alu -26 286 1 778 126 27 0 chr1 42650556 42650667 -200013686 - FLAM_C SINE Alu -15 118 5 1663 173 11 0 chr1 42650682 42650965 -200013388 - AluJo SINE Alu -25 287 2 355 239 142 18 chr1 42650968 42651081 -200013272 + MIR3 SINE MIR 71 197 -11 574 263 11 46 chr1 42651166 42651271 -200013082 - MIR SINE MIR -37 225 127 1843 100 4 21 chr1 42651271 42651552 -200012801 + AluSq SINE Alu 36 311 -2 574 263 11 46 chr1 42651552 42651621 -200012732 - MIR SINE MIR -135 127 57 2071 142 0 0 chr1 42652270 42652579 -200011774 - AluSx SINE Alu -3 309 1 2110 124 10 0 chr1 42652781 42653088 -200011265 - AluSg SINE Alu 0 310 1 863 159 6 0 chr1 42653088 42653245 -200011108 - AluJb SINE Alu -11 301 144 1949 98 11 0 chr1 42653415 42653679 -200010674 - AluSg SINE Alu -25 285 19 2036 120 0 40 chr1 42653709 42654033 -200010320 - AluSx SINE Alu -1 311 1 1496 175 30 0 chr1 42654054 42654322 -200010031 - AluJb SINE Alu -24 288 13 1618 147 31 27 chr1 42654348 42654640 -200009713 - AluSx SINE Alu -19 293 1 1971 141 0 0 chr1 42654664 42654963 -200009390 + AluSq SINE Alu 1 299 -14 1751 149 36 0 chr1 42654991 42655272 -200009081 + AluJb SINE Alu 3 293 -19 796 189 44 132 chr1 42655272 42655511 -200008842 + L1ME LINE L1 4649 4847 -1299 1805 113 85 0 chr1 42655511 42655794 -200008559 - AluSx SINE Alu 0 312 6 796 189 44 132 chr1 42655794 42655919 -200008434 + L1ME LINE L1 4847 4981 -1165 662 261 72 42 chr1 42655986 42656223 -200008130 + L1ME LINE L1 531 759 -5311 2173 122 7 0 chr1 42656223 42656517 -200007836 + AluSx SINE Alu 1 296 -16 662 261 72 42 chr1 42656517 42656668 -200007685 + L1ME LINE L1 759 904 -5166 2696 49 0 0 chr1 42656668 42656975 -200007378 + AluY SINE Alu 1 307 -4 2440 88 7 0 chr1 42656982 42657288 -200007065 + AluSx SINE Alu 1 308 -4 662 261 72 42 chr1 42657288 42657363 -200006990 + L1ME LINE L1 909 1016 -5054 719 248 14 46 chr1 42657450 42657673 -200006680 + L1ME2 LINE L1 5866 6086 -78 2120 129 3 0 chr1 42657698 42658000 -200006353 - AluSp SINE Alu -10 303 1 1890 149 14 3 chr1 42658173 42658468 -200005885 + AluSx SINE Alu 1 298 -14 1969 193 28 65 chr1 42658469 42658643 -200005710 + L1ME LINE L1 5163 5342 -822 2098 108 7 20 chr1 42658643 42658938 -200005415 - AluSp SINE Alu -22 291 1 1969 193 28 65 chr1 42658938 42659350 -200005003 + L1ME LINE L1 5342 5723 -441 2133 122 3 0 chr1 42659373 42659660 -200004693 - AluSx SINE Alu -24 288 1 1497 121 67 40 chr1 42659666 42659842 -200004511 - L1MA8 LINE L1 0 6291 6102 2399 94 0 3 chr1 42659842 42660141 -200004212 + AluSx SINE Alu 1 298 -14 1497 121 67 40 chr1 42660141 42660262 -200004091 - L1MA8 LINE L1 -189 6102 5986 644 124 0 0 chr1 42660655 42660752 -200003601 + AluJ/FRAM SINE Alu 216 312 0 2263 115 0 6 chr1 42660828 42661140 -200003213 - AluSq SINE Alu -3 310 1 457 158 17 45 chr1 42661320 42661470 -200002883 + GA-rich Low_complexity Low_complexity 1 147 -25 1834 118 15 0 chr1 42661470 42661733 -200002620 + AluSg SINE Alu 39 305 -5 457 158 17 45 chr1 42661733 42661759 -200002594 + GA-rich Low_complexity Low_complexity 147 172 0 553 194 0 0 chr1 42661759 42661862 -200002491 - AluSg/x SINE Alu -10 300 198 318 115 31 52 chr1 42661862 42661906 -200002447 + GA-rich Low_complexity Low_complexity 6 49 -50 1780 102 128 0 chr1 42661906 42662172 -200002181 + AluSg SINE Alu 1 300 0 318 115 31 52 chr1 42662172 42662223 -200002130 + GA-rich Low_complexity Low_complexity 49 99 0 1417 104 6 0 chr1 42662323 42662505 -200001848 - AluSc SINE Alu -126 183 1 709 91 0 0 chr1 42662508 42662596 -200001757 - AluSq/x SINE Alu -179 134 47 1196 128 34 6 chr1 42662596 42662775 -200001578 - AluSx SINE Alu -128 184 1 199 379 0 55 chr1 42662775 42662816 -200001537 + MIR SINE MIR 112 154 -108 2403 85 0 7 chr1 42662816 42663121 -200001232 - AluSc SINE Alu -6 303 1 199 379 0 55 chr1 42663121 42663224 -200001129 + MIR SINE MIR 154 248 -14 1046 151 170 54 chr1 42664626 42664756 -199999597 - AluJb SINE Alu -13 289 175 2422 47 0 10 chr1 42664756 42665055 -199999298 - AluY SINE Alu -15 296 1 1046 151 170 54 chr1 42665055 42665183 -199999170 - AluJb SINE Alu -127 175 1 1533 193 29 52 chr1 42665229 42665516 -199998837 + L1MC/D LINE L1 15 307 -6233 1424 169 100 21 chr1 42665516 42665671 -199998682 - AluJb SINE Alu -10 302 161 2267 83 3 20 chr1 42665671 42665971 -199998382 - AluSq SINE Alu -18 295 1 191 59 0 29 chr1 42665978 42666012 -199998341 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1424 169 100 21 chr1 42666012 42666127 -199998226 - AluJb SINE Alu -156 156 2 1533 193 29 52 chr1 42666127 42666187 -199998166 + L1MC/D LINE L1 307 354 -6186 868 93 0 86 chr1 42666189 42666340 -199998013 - AluSx SINE Alu 0 310 173 457 167 0 0 chr1 42666342 42666414 -199997939 - AluSx SINE Alu -240 73 2 6401 186 91 42 chr1 42666415 42666865 -199997488 + L1MC/D LINE L1 342 769 -5771 1747 161 10 28 chr1 42666865 42667156 -199997197 + AluJo SINE Alu 1 286 -26 6401 186 91 42 chr1 42667156 42667817 -199996536 + L1MC/D LINE L1 769 1396 -5144 2306 108 0 7 chr1 42667817 42668122 -199996231 - AluSx SINE Alu -9 303 1 6401 186 91 42 chr1 42668122 42668239 -199996114 + L1MC/D LINE L1 1396 1506 -5034 2191 93 7 7 chr1 42668239 42668529 -199995824 - AluSg SINE Alu -20 290 1 6401 186 91 42 chr1 42668529 42668980 -199995373 + L1MC/D LINE L1 1506 2294 -4246 289 152 0 0 chr1 42668995 42669041 -199995312 + L1MC/D LINE L1 2258 2303 -4237 499 169 11 0 chr1 42669041 42669130 -199995223 + AluJ/FRAM SINE Alu 223 312 0 1154 66 0 0 chr1 42669201 42669337 -199995016 + AluSq/x SINE Alu 1 136 -176 2072 115 10 19 chr1 42669337 42669650 -199994703 + AluSq SINE Alu 1 310 -3 4601 215 70 70 chr1 42669743 42670324 -199994029 + L1MC/D LINE L1 3028 3608 -2932 1836 144 28 7 chr1 42670324 42670608 -199993745 - AluJb SINE Alu -14 298 9 4601 215 70 70 chr1 42670608 42670661 -199993692 + L1MC/D LINE L1 3608 3660 -2880 1924 151 7 20 chr1 42670661 42670960 -199993393 + AluSx SINE Alu 1 295 -17 809 132 0 8 chr1 42670964 42671085 -199993268 - FLAM_C SINE Alu -9 124 5 4601 215 70 70 chr1 42671085 42671191 -199993162 + L1MC/D LINE L1 3663 3768 -2772 2100 112 11 0 chr1 42671191 42671478 -199992875 - AluSg SINE Alu -20 290 1 4601 215 70 70 chr1 42671478 42671902 -199992451 + L1MC/D LINE L1 3768 4191 -2349 1949 96 0 11 chr1 42671902 42672163 -199992190 + AluSx SINE Alu 1 258 -54 4601 215 70 70 chr1 42672163 42672174 -199992179 + L1MC/D LINE L1 4191 4201 -2339 252 0 0 0 chr1 42672174 42672202 -199992151 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2308 80 0 48 chr1 42672210 42672344 -199992009 + AluSp SINE Alu 1 140 -173 2335 103 0 0 chr1 42672344 42672646 -199991707 + AluSg SINE Alu 1 302 -8 2308 80 0 48 chr1 42672646 42672823 -199991530 + AluSp SINE Alu 140 297 -16 4601 215 70 70 chr1 42672823 42673733 -199990620 + L1MC/D LINE L1 4208 5117 -1423 1836 148 6 60 chr1 42673733 42673902 -199990451 - AluJo SINE Alu -10 302 156 2278 86 3 7 chr1 42673902 42674203 -199990150 - AluY SINE Alu -11 300 1 1836 148 6 60 chr1 42674203 42674351 -199990002 - AluJo SINE Alu -156 156 2 4601 215 70 70 chr1 42674351 42674376 -199989977 + L1MC/D LINE L1 5117 5141 -1399 1443 159 151 0 chr1 42674376 42674627 -199989726 - AluJo SINE Alu -13 289 1 4601 215 70 70 chr1 42674627 42674654 -199989699 + L1MC/D LINE L1 5141 5167 -1373 2142 97 16 39 chr1 42674654 42674962 -199989391 + AluSq SINE Alu 1 301 -12 2397 90 0 0 chr1 42674962 42675261 -199989092 + AluSg SINE Alu 1 299 -11 4601 215 70 70 chr1 42675261 42675460 -199988893 + L1MC/D LINE L1 5165 5340 -1200 2276 90 7 0 chr1 42675587 42675876 -199988477 + AluY SINE Alu 3 293 -18 806 171 35 65 chr1 42675882 42676052 -199988301 + MLT2D LTR ERVL 188 352 -62 1459 173 0 9 chr1 42676083 42676309 -199988044 + AluSx SINE Alu 1 224 -88 1424 207 16 80 chr1 42676365 42676723 -199987630 + L1MC/D LINE L1 5336 5716 -903 2190 129 0 0 chr1 42676723 42677026 -199987327 + AluSx SINE Alu 1 303 -9 1988 90 32 22 chr1 42677026 42677339 -199987014 + AluY SINE Alu 1 316 0 1424 207 16 80 chr1 42677339 42677542 -199986811 + L1MC/D LINE L1 5714 5874 -745 1364 122 0 16 chr1 42677546 42677735 -199986618 + AluSx SINE Alu 1 186 -126 273 308 0 0 chr1 42678417 42678521 -199985832 - AluSq/x SINE Alu -199 104 1 2007 153 3 0 chr1 42678550 42678850 -199985503 + AluJb SINE Alu 1 301 -11 1847 188 0 0 chr1 42679179 42679482 -199984871 - AluJo SINE Alu -9 303 1 191 94 0 31 chr1 42679882 42679914 -199984439 + MIR SINE MIR 82 112 -150 1396 156 0 5 chr1 42679924 42680136 -199984217 - AluJb SINE Alu -17 295 85 1241 185 0 14 chr1 42682245 42682456 -199981897 + AluJo SINE Alu 1 208 -104 1419 167 31 49 chr1 42683634 42683754 -199980599 + AluJo SINE Alu 1 122 -190 185 62 0 31 chr1 42683754 42683786 -199980567 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1419 167 31 49 chr1 42683786 42683797 -199980556 + AluJo SINE Alu 122 132 -180 2271 90 0 40 chr1 42683797 42684120 -199980233 + AluY SINE Alu 1 310 -1 1419 167 31 49 chr1 42684120 42684274 -199980079 + AluJo SINE Alu 132 282 -30 1607 124 0 9 chr1 42684289 42684515 -199979838 - AluSx SINE Alu -88 224 1 195 319 22 44 chr1 42684580 42684715 -199979638 + L2 LINE L2 2916 3047 -225 325 270 26 17 chr1 42684860 42684975 -199979378 + MIR SINE MIR 90 205 -57 293 271 57 0 chr1 42685024 42685094 -199979259 + L2 LINE L2 3169 3242 -30 743 240 180 77 chr1 42685129 42685284 -199979069 + MARNA DNA Mariner 63 201 -385 2118 90 47 17 chr1 42685284 42685583 -199978770 + AluSc SINE Alu 2 309 0 743 240 180 77 chr1 42685583 42685882 -199978471 + MARNA DNA Mariner 201 564 -22 464 294 147 4 chr1 42686233 42686505 -199977848 - L1ME4a LINE L1 -222 5899 5589 2171 116 3 0 chr1 42688285 42688578 -199975775 - AluSx SINE Alu -14 298 5 291 114 0 0 chr1 42688632 42688676 -199975677 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 2116 91 29 4 chr1 42688676 42688952 -199975401 - AluSq SINE Alu -30 283 1 1811 101 8 0 chr1 42689174 42689411 -199974942 - AluSq SINE Alu -21 292 54 246 62 0 0 chr1 42689514 42689546 -199974807 + (TCCCC)n Simple_repeat Simple_repeat 5 36 0 450 159 59 141 chr1 42689549 42689692 -199974661 - HAL1 LINE L1 -1554 953 825 1624 144 115 4 chr1 42689692 42689962 -199974391 + AluJb SINE Alu 1 300 -12 450 159 59 141 chr1 42689962 42689988 -199974365 - HAL1 LINE L1 -1682 825 798 225 0 0 0 chr1 42690160 42690185 -199974168 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1753 118 98 0 chr1 42690185 42690440 -199973913 - AluSx SINE Alu -32 280 1 1084 91 0 0 chr1 42690442 42690574 -199973779 - AluSq/x SINE Alu -181 132 1 642 225 98 98 chr1 42690644 42690982 -199973371 - HAL1 LINE L1 -2150 357 20 182 314 42 34 chr1 42691124 42691242 -199973111 + L2 LINE L2 2941 3059 -213 349 327 80 0 chr1 42691468 42691618 -199972735 - MIR3 SINE MIR -3 205 44 268 233 16 23 chr1 42691779 42691908 -199972445 + CT-rich Low_complexity Low_complexity 3 130 0 192 40 0 0 chr1 42691908 42691933 -199972420 + (TG)n Simple_repeat Simple_repeat 2 26 0 1045 149 6 12 chr1 42691998 42692166 -199972187 - AluJb SINE Alu -137 175 9 2174 100 28 0 chr1 42692259 42692549 -199971804 + AluSx SINE Alu 6 303 -9 216 97 0 0 chr1 42692724 42692755 -199971598 + (T)n Simple_repeat Simple_repeat 1 31 0 2146 116 41 0 chr1 42693417 42693709 -199970644 + AluSx SINE Alu 1 304 -8 2041 93 58 21 chr1 42694379 42694670 -199969683 + AluSq SINE Alu 1 302 -11 464 297 113 0 chr1 42695107 42695292 -199969061 - MIR SINE MIR -21 241 36 249 33 0 0 chr1 42695317 42695347 -199969006 + (GA)n Simple_repeat Simple_repeat 2 31 0 2141 104 44 0 chr1 42695372 42695669 -199968684 - AluSq SINE Alu -3 310 1 2027 129 40 7 chr1 42695870 42696172 -199968181 - AluSx SINE Alu 0 312 1 333 100 0 0 chr1 42696191 42696241 -199968112 + (TCCCC)n Simple_repeat Simple_repeat 4 53 0 1604 185 0 7 chr1 42696247 42696523 -199967830 - AluJo SINE Alu -38 274 1 639 215 121 45 chr1 42697543 42697766 -199966587 - MIR SINE MIR 0 262 23 233 222 0 19 chr1 42698735 42698789 -199965564 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1821 156 3 14 chr1 42699131 42699419 -199964934 + AluJo SINE Alu 4 288 -24 1972 157 0 0 chr1 42699444 42699731 -199964622 + AluJo SINE Alu 2 288 -24 1944 123 13 47 chr1 42699754 42699899 -199964454 + AluSx SINE Alu 1 149 -163 2442 69 7 16 chr1 42699899 42700203 -199964150 + AluSq SINE Alu 2 302 -11 1944 123 13 47 chr1 42700203 42700374 -199963979 + AluSx SINE Alu 149 306 -6 2528 61 0 0 chr1 42700517 42700812 -199963541 - AluY SINE Alu -16 295 1 860 163 0 21 chr1 42700887 42701028 -199963325 + FLAM_C SINE Alu 1 138 -5 380 306 127 0 chr1 42701038 42701211 -199963142 + MIR SINE MIR 62 256 -6 2507 236 71 141 chr1 42701400 42701944 -199962409 + L2 LINE L2 1622 2203 -1110 2376 101 0 0 chr1 42701944 42702251 -199962102 + AluSx SINE Alu 1 307 -5 2507 236 71 141 chr1 42702251 42702324 -199962029 + L2 LINE L2 2203 2280 -1033 862 117 0 0 chr1 42702324 42702444 -199961909 + AluJb SINE Alu 5 124 -188 2507 236 71 141 chr1 42702444 42702893 -199961460 + L2 LINE L2 2280 2759 -554 2224 80 18 7 chr1 42702893 42703179 -199961174 - AluSc SINE Alu -20 289 1 2507 236 71 141 chr1 42703179 42703483 -199960870 + L2 LINE L2 2759 3000 -313 2468 84 0 0 chr1 42703483 42703793 -199960560 - AluY SINE Alu -1 310 1 2507 236 71 141 chr1 42703793 42703853 -199960500 + L2 LINE L2 3000 3063 -250 249 33 0 0 chr1 42703979 42704009 -199960344 + (GA)n Simple_repeat Simple_repeat 2 31 0 2141 104 44 0 chr1 42704034 42704331 -199960022 - AluSq SINE Alu -3 310 1 2047 143 40 3 chr1 42704517 42704842 -199959511 - AluSx SINE Alu 0 336 1 300 120 0 0 chr1 42704861 42704911 -199959442 + (TCCCC)n Simple_repeat Simple_repeat 4 53 0 1616 181 0 7 chr1 42704917 42705193 -199959160 - AluJo SINE Alu -38 274 1 639 215 121 45 chr1 42706213 42706436 -199957917 - MIR SINE MIR 0 262 23 233 222 0 19 chr1 42707407 42707461 -199956892 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1821 156 3 14 chr1 42707803 42708091 -199956262 + AluJo SINE Alu 4 288 -24 1972 157 0 0 chr1 42708116 42708403 -199955950 + AluJo SINE Alu 2 288 -24 2127 97 10 48 chr1 42708426 42708570 -199955783 + AluSx SINE Alu 1 128 -184 2455 84 3 0 chr1 42708570 42708869 -199955484 + AluSp SINE Alu 2 301 -12 2127 97 10 48 chr1 42708869 42709033 -199955320 + AluSx SINE Alu 128 297 -15 319 282 61 18 chr1 42709399 42709562 -199954791 + L2 LINE L2 1965 2134 -1180 926 33 33 33 chr1 42709655 42709775 -199954578 - BC200 scRNA scRNA -79 121 2 562 245 48 7 chr1 42709775 42709922 -199954431 + MIR SINE MIR 54 206 -56 719 144 8 8 chr1 42709953 42710071 -199954282 - FLAM_C SINE Alu -15 118 1 357 332 39 42 chr1 42710095 42710378 -199953975 + L2 LINE L2 2373 2654 -660 1726 162 3 32 chr1 42710457 42710765 -199953588 + AluJo SINE Alu 1 299 -13 2479 63 0 28 chr1 42710905 42711224 -199953129 - AluY SINE Alu -1 310 1 204 286 67 34 chr1 42711239 42711358 -199952995 + L2 LINE L2 2947 3069 -203 350 244 150 8 chr1 42711527 42711654 -199952699 - L2 LINE L2 0 3313 3169 350 283 62 18 chr1 42711781 42711894 -199952459 - L2 LINE L2 -4 3309 3192 315 49 0 0 chr1 42712343 42712384 -199951969 + (TG)n Simple_repeat Simple_repeat 2 42 0 1404 190 51 88 chr1 42712406 42712777 -199951576 - L1MB5 LINE L1 -8 6166 5816 2403 62 3 3 chr1 42712777 42713069 -199951284 - AluY SINE Alu -19 292 1 1404 190 51 88 chr1 42713069 42713189 -199951164 - L1MB5 LINE L1 -358 5816 5693 281 104 62 0 chr1 42713487 42713535 -199950818 - L2 LINE L2 0 3313 3263 2215 111 7 3 chr1 42714204 42714510 -199949843 + AluSc SINE Alu 1 307 -2 727 213 43 47 chr1 42715325 42715536 -199948817 + MIR SINE MIR 43 252 -10 2060 113 0 45 chr1 42716814 42716958 -199947395 + AluSx SINE Alu 2 126 -186 2455 64 0 42 chr1 42716958 42717270 -199947083 + AluY SINE Alu 1 299 -12 2060 113 0 45 chr1 42717270 42717435 -199946918 + AluSx SINE Alu 126 297 -15 234 287 28 46 chr1 42717873 42717981 -199946372 - MIR SINE MIR -71 137 32 2072 94 49 0 chr1 42718276 42718564 -199945789 - AluSp SINE Alu -11 302 1 689 10 0 62 chr1 42719327 42719423 -199944930 - L1PA8 LINE L1 0 6172 6083 757 191 71 37 chr1 42720531 42720758 -199943595 + MIR SINE MIR 16 245 -17 2324 103 0 13 chr1 42720876 42721178 -199943175 + AluSx SINE Alu 2 299 -13 2137 120 0 0 chr1 42721476 42721759 -199942594 + AluSx SINE Alu 1 283 -29 1865 151 3 7 chr1 42722058 42722350 -199942003 - AluSx SINE Alu -21 291 1 4926 157 33 29 chr1 42722506 42723013 -199941340 + L1MB7 LINE L1 4518 5021 -1163 2340 103 0 0 chr1 42723013 42723313 -199941040 + AluSg SINE Alu 1 300 -10 4926 157 33 29 chr1 42723313 42724525 -199939828 + L1MB7 LINE L1 5021 6184 0 2449 77 0 3 chr1 42726151 42726461 -199937892 + AluY SINE Alu 2 310 -1 953 171 24 18 chr1 42726486 42726656 -199937697 + FAM SINE Alu 1 171 -4 441 0 0 0 chr1 42727312 42727361 -199936992 + (TC)n Simple_repeat Simple_repeat 2 50 0 189 0 0 0 chr1 42727360 42727381 -199936972 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 1200 86 12 12 chr1 42727402 42727564 -199936789 - AluSc SINE Alu -13 296 135 2490 252 87 20 chr1 42727665 42727748 -199936605 - HAL1 LINE L1 -10 2497 2421 1698 170 0 17 chr1 42727748 42728042 -199936311 - AluJo SINE Alu -21 291 3 2490 252 87 20 chr1 42728042 42728855 -199935498 - HAL1 LINE L1 -86 2421 1541 463 152 0 0 chr1 42728861 42728927 -199935426 - FLAM SINE Alu -18 125 60 458 46 15 0 chr1 42728980 42729045 -199935308 + (TC)n Simple_repeat Simple_repeat 1 66 0 * 532 146 0 27 chr1 42729035 42729145 -199935208 + (TCCCC)n Simple_repeat Simple_repeat 5 111 0 24 32 0 0 chr1 42729706 42729737 -199934616 + GC_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 42729803 42729827 -199934526 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 42729957 42729978 -199934375 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 42730058 42730079 -199934274 + GC_rich Low_complexity Low_complexity 1 21 0 693 219 58 102 chr1 42730797 42730888 -199933465 + L2 LINE L2 2998 3091 -222 2321 99 0 0 chr1 42730888 42731181 -199933172 + AluSg SINE Alu 1 293 -17 693 219 58 102 chr1 42731181 42731414 -199932939 + L2 LINE L2 3091 3308 -5 1536 194 3 28 chr1 42731750 42732038 -199932315 - AluJo SINE Alu -31 281 1 2471 185 44 4 chr1 42732041 42732521 -199931832 - L1ME1 LINE L1 -58 6108 5610 1774 128 0 0 chr1 42732525 42732767 -199931586 + AluSx SINE Alu 1 242 -70 312 146 4 22 chr1 42732767 42732826 -199931527 - Alu SINE Alu -256 44 1 25 0 0 0 chr1 42734319 42734344 -199930009 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr1 42735350 42735383 -199928970 + AT_rich Low_complexity Low_complexity 1 33 0 2325 102 3 6 chr1 42735800 42736113 -199928240 - AluSp SINE Alu -1 312 1 239 191 0 0 chr1 42736295 42736337 -199928016 + 5S rRNA rRNA 1 42 -79 2313 115 3 0 chr1 42736385 42736690 -199927663 + AluSx SINE Alu 1 306 -6 1092 164 0 0 chr1 42736989 42737154 -199927199 - AluY SINE Alu -14 297 133 2257 92 0 0 chr1 42737154 42737437 -199926916 - AluSg SINE Alu -8 302 20 1674 102 121 15 chr1 42737503 42737767 -199926586 + AluSg1 SINE Alu 1 292 -17 300 296 0 23 chr1 42737999 42738087 -199926266 + MIR3 SINE MIR 109 194 -14 444 325 28 73 chr1 42738198 42738340 -199926013 - L3 LINE CR1 -621 956 832 2227 126 0 3 chr1 42738340 42738642 -199925711 + AluSx SINE Alu 1 301 -11 444 325 28 73 chr1 42738642 42738785 -199925568 - L3 LINE CR1 -745 832 684 545 194 74 0 chr1 42738924 42739032 -199925321 - FLAM_A SINE Alu -17 116 1 257 265 210 19 chr1 42739081 42739243 -199925110 + MIR3 SINE MIR 16 208 0 419 203 146 32 chr1 42739275 42739433 -199924920 + MIR SINE MIR 5 180 -82 383 118 0 15 chr1 42739446 42739514 -199924839 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 2095 125 7 3 chr1 42739514 42739801 -199924552 - AluSx SINE Alu -24 288 1 34 0 0 0 chr1 42739943 42739977 -199924376 + AT_rich Low_complexity Low_complexity 1 34 0 806 91 8 16 chr1 42739981 42740102 -199924251 - AluJb SINE Alu -192 120 1 2182 124 0 0 chr1 42740136 42740427 -199923926 + AluSg SINE Alu 2 292 -18 2039 132 0 10 chr1 42741157 42741460 -199922893 - AluSx SINE Alu -12 300 1 320 262 44 66 chr1 42741615 42741798 -199922555 + MIR SINE MIR 84 262 0 2075 126 7 16 chr1 42741862 42742171 -199922182 - AluSx SINE Alu -6 306 1 211 251 15 15 chr1 42744567 42744633 -199919720 + MIR SINE MIR 84 150 -58 229 287 85 54 chr1 42745432 42745561 -199918792 + MIR SINE MIR 2 134 -128 248 261 125 0 chr1 42745683 42745771 -199918582 - MIR SINE MIR -6 256 158 1620 142 0 0 chr1 42745774 42746051 -199918302 - AluSx SINE Alu 0 334 58 25 0 0 0 chr1 42746056 42746081 -199918272 + AT_rich Low_complexity Low_complexity 1 25 0 1788 125 36 50 chr1 42746130 42746433 -199917920 + AluJb SINE Alu 1 299 -13 2511 72 0 0 chr1 42746435 42746739 -199917614 + AluY SINE Alu 1 304 -7 24 0 0 0 chr1 42746828 42746852 -199917501 + AT_rich Low_complexity Low_complexity 1 24 0 192 186 70 0 chr1 42746865 42746908 -199917445 - MIR SINE MIR -62 146 101 439 273 73 0 chr1 42746929 42747039 -199917314 + MIR SINE MIR 27 144 -64 2295 107 0 16 chr1 42747306 42747614 -199916739 - AluSx SINE Alu -8 304 2 341 307 149 19 chr1 42747818 42748033 -199916320 + MIR SINE MIR 11 253 -9 2177 103 0 7 chr1 42748296 42748587 -199915766 - AluSx SINE Alu -23 289 1 2252 104 10 0 chr1 42748719 42749007 -199915346 - AluSx SINE Alu -21 291 1 2157 116 3 10 chr1 42749016 42749319 -199915034 - AluSx SINE Alu -11 301 1 1896 163 7 0 chr1 42750670 42750959 -199913394 - AluJb SINE Alu -21 291 1 183 224 0 20 chr1 42751210 42751259 -199913094 + L2 LINE L2 3168 3215 -98 262 280 174 8 chr1 42751608 42751740 -199912613 - L2 LINE L2 -222 3050 2897 303 275 254 11 chr1 42751860 42752049 -199912304 + MIR SINE MIR 23 257 -5 1839 153 7 17 chr1 42752050 42752351 -199912002 - AluSx SINE Alu -14 298 1 419 276 141 0 chr1 42752485 42752670 -199911683 - L2 LINE L2 -940 2374 2164 387 321 88 8 chr1 42752896 42753145 -199911208 - L2 LINE L2 -1240 2074 1806 1791 193 3 0 chr1 42753437 42753732 -199910621 + AluJo SINE Alu 1 296 -16 2958 16 0 0 chr1 42753741 42754059 -199910294 - AluYb8 SINE Alu 0 318 1 2410 88 0 0 chr1 42754886 42755182 -199909171 - AluSg SINE Alu -14 296 1 23 33 0 0 chr1 42755372 42755402 -199908951 + AT_rich Low_complexity Low_complexity 1 30 0 849 217 0 0 chr1 42755599 42755756 -199908597 - FRAM SINE Alu -19 157 1 244 330 142 17 chr1 42756120 42756359 -199907994 + L2 LINE L2 2682 2950 -364 2039 100 7 4 chr1 42756592 42756871 -199907482 + AluSq SINE Alu 21 300 -13 292 351 0 45 chr1 42756975 42757129 -199907224 + L3 LINE CR1 652 798 -779 2332 95 3 0 chr1 42757202 42757497 -199906856 - AluSx SINE Alu -16 296 1 207 276 17 0 chr1 42757704 42757762 -199906591 + L3 LINE CR1 1489 1547 -30 1447 142 38 31 chr1 42758282 42758570 -199905783 - AluSx SINE Alu -14 298 9 204 40 0 0 chr1 42759904 42759929 -199904424 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 849 120 8 0 chr1 42759933 42760050 -199904303 - FLAM_C SINE Alu -25 118 1 35 19 0 19 chr1 42760228 42760261 -199904092 + AT_rich Low_complexity Low_complexity 1 34 -18 771 147 0 0 chr1 42760261 42760377 -199903976 - FLAM_C SINE Alu -15 118 3 35 19 0 19 chr1 42760377 42760396 -199903957 + AT_rich Low_complexity Low_complexity 34 52 0 225 267 128 0 chr1 42760444 42760530 -199903823 - L1ME3A LINE L1 -37 6133 6037 195 42 0 0 chr1 42760551 42760575 -199903778 + (TTA)n Simple_repeat Simple_repeat 2 25 0 53 49 0 0 chr1 42760624 42760705 -199903648 + AT_rich Low_complexity Low_complexity 1 81 0 473 356 37 13 chr1 42760831 42761129 -199903224 + L2 LINE L2 1890 2194 -1120 1172 186 0 5 chr1 42761283 42761529 -199902824 - AluJo SINE Alu 0 333 89 2405 90 3 0 chr1 42761535 42761867 -199902486 - AluSp SINE Alu 0 333 1 6544 59 17 57 chr1 42762316 42763447 -199900906 - SVA Other Other -589 1386 432 2455 78 0 0 chr1 42763564 42763857 -199900496 - AluSx SINE Alu -19 293 1 1489 110 0 0 chr1 42764221 42764412 -199899941 - AluSq SINE Alu -85 228 38 192 296 113 28 chr1 42764476 42764618 -199899735 + L2 LINE L2 2917 3070 -202 420 262 107 17 chr1 42764698 42764839 -199899514 - MIR SINE MIR -33 175 55 1777 186 3 10 chr1 42764839 42765146 -199899207 - AluJo SINE Alu -6 306 2 420 262 107 17 chr1 42765146 42765189 -199899164 - MIR SINE MIR -153 55 17 267 196 59 0 chr1 42765409 42765460 -199898893 + L2 LINE L2 3252 3305 -8 2511 81 0 0 chr1 42765529 42765836 -199898517 + AluSg SINE Alu 3 309 -1 564 231 174 20 chr1 42765836 42766031 -199898322 - MIR SINE MIR -33 229 5 1042 103 19 0 chr1 42766142 42766298 -199898055 - MER5A DNA MER1_type -14 175 17 812 237 75 13 chr1 42766301 42766529 -199897824 + MIR SINE MIR 4 245 -17 2186 91 3 44 chr1 42768655 42768973 -199895380 - AluY SINE Alu 0 311 7 2444 83 0 0 chr1 42768973 42769273 -199895080 - AluSx SINE Alu -12 300 1 905 116 0 31 chr1 42769549 42769678 -199894675 - FLAM_C SINE Alu -13 130 6 286 320 8 81 chr1 42770604 42770838 -199893515 + L2 LINE L2 2143 2359 -955 4795 98 35 10 chr1 42770840 42771053 -199893300 + L1MA2 LINE L1 5558 5764 -540 2288 119 0 22 chr1 42771053 42771372 -199892981 + AluSx SINE Alu 1 312 0 4795 98 35 10 chr1 42771372 42771883 -199892470 + L1MA2 LINE L1 5764 6300 -4 473 203 21 14 chr1 42771897 42772040 -199892313 + CT-rich Low_complexity Low_complexity 1 144 0 * 552 222 11 42 chr1 42772005 42772360 -199891993 + T-rich Low_complexity Low_complexity 1 344 0 241 163 0 23 chr1 42772366 42772409 -199891944 + CT-rich Low_complexity Low_complexity 1 42 0 838 176 18 6 chr1 42772409 42772574 -199891779 - AluJo/FRAM SINE Alu -8 304 138 516 181 0 0 chr1 42772574 42772657 -199891696 - AluJ/FLAM SINE Alu -228 84 2 34 0 0 0 chr1 42773314 42773348 -199891005 + AT_rich Low_complexity Low_complexity 1 34 0 610 276 82 21 chr1 42773450 42773780 -199890573 - L1ME4a LINE L1 -220 5901 5552 1994 118 36 16 chr1 42774144 42774473 -199889880 + AluSx SINE Alu 1 335 0 1744 153 31 7 chr1 42774923 42775210 -199889143 - AluSx SINE Alu -17 295 2 696 307 140 33 chr1 42775527 42776106 -199888247 + L2 LINE L2 1852 2492 -822 338 345 112 36 chr1 42776482 42776786 -199887567 + L2 LINE L2 2946 3272 0 2277 108 7 0 chr1 42776868 42777164 -199887189 - AluSq SINE Alu -14 299 2 314 227 13 0 chr1 42777173 42777248 -199887105 - L1MC/D LINE L1 -2149 5659 5584 684 111 0 0 chr1 42779098 42779188 -199885165 - 5S rRNA rRNA -31 90 1 225 302 0 0 chr1 42779249 42779312 -199885041 + L2 LINE L2 3249 3311 -2 1294 161 0 9 chr1 42780611 42780828 -199883525 - AluSq SINE Alu -14 299 85 2274 114 0 0 chr1 42781002 42781308 -199883045 + AluY SINE Alu 6 311 0 2176 102 7 3 chr1 42781326 42781609 -199882744 + AluSg SINE Alu 1 284 -26 232 195 182 39 chr1 42781626 42781703 -199882650 + HAL1 LINE L1 1289 1376 -1131 263 224 78 35 chr1 42781806 42781922 -199882431 + L1ME1 LINE L1 6046 6166 0 * 844 252 90 11 chr1 42781918 42782025 -199882328 + HAL1 LINE L1 1475 1572 -935 1929 142 3 14 chr1 42782025 42782351 -199882002 + AluSx SINE Alu 4 312 0 844 252 90 11 chr1 42782351 42782521 -199881832 + HAL1 LINE L1 1572 1774 -733 473 210 154 69 chr1 42782532 42782765 -199881588 + HAL1 LINE L1 1832 2084 -423 1885 93 112 7 chr1 42782774 42783052 -199881301 + AluSg1 SINE Alu 1 307 -2 23 33 0 0 chr1 42783053 42783083 -199881270 + AT_rich Low_complexity Low_complexity 1 30 0 832 254 229 10 chr1 42783100 42783502 -199880851 - L2 LINE L2 0 3313 2824 605 212 0 53 chr1 42783800 42783932 -199880421 - FRAM SINE Alu -51 125 1 1615 162 7 68 chr1 42784167 42784476 -199879877 - AluJo SINE Alu -21 291 2 234 250 115 68 chr1 42784503 42784651 -199879702 + MIR SINE MIR 39 193 -69 593 256 149 0 chr1 42784673 42784868 -199879485 + MIR SINE MIR 5 228 -34 22 0 0 0 chr1 42786624 42786646 -199877707 + AT_rich Low_complexity Low_complexity 1 22 0 1756 173 13 20 chr1 42788940 42789246 -199875107 - AluSx SINE Alu -8 304 1 492 301 65 11 chr1 42790432 42790618 -199873735 - MIR3 SINE MIR -9 199 4 259 341 81 8 chr1 42791045 42791168 -199873185 + L2 LINE L2 3137 3268 -4 207 267 100 22 chr1 42791877 42791967 -199872386 - L2 LINE L2 -2885 429 333 397 230 81 0 chr1 42792045 42792132 -199872221 - MER81 DNA DNA -19 95 2 2267 204 90 39 chr1 42792412 42792737 -199871616 + L1ME1 LINE L1 5532 5839 -327 2517 68 0 0 chr1 42792737 42793032 -199871321 - AluY SINE Alu -16 295 1 2267 204 90 39 chr1 42793032 42793295 -199871058 + L1ME1 LINE L1 5839 6150 -16 1967 124 50 0 chr1 42794709 42794992 -199869361 - AluSq SINE Alu -16 297 1 2271 102 20 0 chr1 42795042 42795347 -199869006 - AluSp SINE Alu -2 311 1 891 230 60 102 chr1 42795383 42795783 -199868570 - L1MC5 LINE L1 -811 6997 6581 2223 112 26 0 chr1 42795783 42796088 -199868265 - AluSp SINE Alu 0 313 1 891 230 60 102 chr1 42796088 42796153 -199868200 - L1MC5 LINE L1 -1227 6581 6602 180 0 0 0 chr1 42796153 42796173 -199868180 + (CAA)n Simple_repeat Simple_repeat 2 21 0 891 230 60 102 chr1 42796173 42796319 -199868034 - L1MC5 LINE L1 -1205 6603 6452 256 192 135 93 chr1 42796474 42796667 -199867686 - L1MC4a LINE L1 -1571 6237 6037 3084 202 70 15 chr1 42796740 42797463 -199866890 - L1MB7 LINE L1 -2 6182 5420 2146 118 20 7 chr1 42797550 42797854 -199866499 + AluSx SINE Alu 1 308 -4 213 39 0 0 chr1 42797985 42798011 -199866342 + (A)n Simple_repeat Simple_repeat 1 26 0 2646 71 0 0 chr1 42799348 42799658 -199864695 - AluY SINE Alu 0 311 2 263 222 118 42 chr1 42799765 42799909 -199864444 - L1ME LINE L1 -412 5709 5555 451 249 146 12 chr1 42799931 42800096 -199864257 + L2 LINE L2 3127 3313 0 246 274 41 0 chr1 42800166 42800239 -199864114 - MIR SINE MIR -110 152 77 2881 13 0 3 chr1 42800245 42800559 -199863794 - AluYb8 SINE Alu -5 313 1 1620 157 44 27 chr1 42801061 42801355 -199862998 - MER47A DNA MER2_type -66 300 2 321 318 123 6 chr1 42801431 42801601 -199862752 - MIR SINE MIR -26 236 47 246 62 0 0 chr1 42802174 42802206 -199862147 + (T)n Simple_repeat Simple_repeat 1 32 0 614 264 14 46 chr1 42802747 42802818 -199861535 + MIR SINE MIR 52 124 -138 1971 142 7 13 chr1 42802818 42803120 -199861233 - AluSx SINE Alu -12 300 1 614 264 14 46 chr1 42803120 42803264 -199861089 + MIR SINE MIR 124 260 -2 204 271 0 0 chr1 42804116 42804164 -199860189 + GA-rich Low_complexity Low_complexity 1 48 0 1317 136 5 0 chr1 42806705 42806896 -199857457 - MSTA LTR MaLR 0 428 237 1190 84 0 18 chr1 42808573 42808740 -199855613 - AluSg/x SINE Alu -14 298 135 2361 67 27 0 chr1 42809027 42809324 -199855029 - AluY SINE Alu -6 305 1 21 36 0 0 chr1 42809331 42809359 -199854994 + AT_rich Low_complexity Low_complexity 1 28 0 1043 210 69 7 chr1 42809359 42809635 -199854718 + L1MC5 LINE L1 7637 7929 -32 240 200 25 38 chr1 42809655 42809735 -199854618 + A-rich Low_complexity Low_complexity 2 80 0 1638 152 71 50 chr1 42809774 42810097 -199854256 - MER2 DNA MER2_type 0 345 16 923 221 36 5 chr1 42810122 42810317 -199854036 + MIR SINE MIR 5 205 -57 733 282 29 53 chr1 42810365 42810514 -199853839 + L1ME LINE L1 5290 5441 -721 2365 67 3 13 chr1 42810514 42810812 -199853541 - AluY SINE Alu -13 298 4 749 172 166 7 chr1 42810815 42810960 -199853393 - FAM SINE Alu -7 168 1 733 282 29 53 chr1 42810960 42811185 -199853168 + L1ME LINE L1 5443 5659 -503 1811 182 3 0 chr1 42811348 42811656 -199852697 - AluJo SINE Alu -3 309 1 275 364 158 20 chr1 42813062 42813315 -199851038 + L2 LINE L2 2969 3256 -16 22 35 0 0 chr1 42814377 42814406 -199849947 + AT_rich Low_complexity Low_complexity 1 29 0 2112 101 33 0 chr1 42815494 42815770 -199848583 - AluSc SINE Alu -24 285 1 2051 182 11 5 chr1 42815770 42816150 -199848203 + MER63 DNA MER1_type 596 977 -84 2653 36 3 0 chr1 42816150 42816453 -199847900 + AluY SINE Alu 1 304 -7 1173 124 12 0 chr1 42816453 42816614 -199847739 + AluSg/x SINE Alu 134 296 -16 533 167 24 0 chr1 42816614 42816698 -199847655 + MER63 DNA MER1_type 972 1057 -3 2212 101 0 3 chr1 42816727 42817013 -199847340 + AluSq SINE Alu 16 300 -13 598 307 104 43 chr1 42817028 42817607 -199846746 - L2 LINE L2 -855 2459 1846 270 81 0 0 chr1 42817748 42817785 -199846568 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 781 183 0 0 chr1 42817800 42817915 -199846438 - FLAM_C SINE Alu -27 116 2 1735 163 37 0 chr1 42817944 42818238 -199846115 + AluSx SINE Alu 2 306 -6 1847 135 3 46 chr1 42818509 42818644 -199845709 + AluSx SINE Alu 1 140 -172 2115 125 3 3 chr1 42818644 42818941 -199845412 + AluSx SINE Alu 1 297 -15 2188 129 0 3 chr1 42818942 42819251 -199845102 + AluSg SINE Alu 1 308 -2 1847 135 3 46 chr1 42819251 42819439 -199844914 + AluSx SINE Alu 139 312 0 207 363 52 15 chr1 42819620 42819755 -199844598 - MIR3 SINE MIR -66 142 3 1764 186 0 3 chr1 42819815 42820111 -199844242 + AluJo SINE Alu 1 295 -17 1742 191 47 3 chr1 42820280 42820620 -199843733 + L1M4 LINE L1 5350 5704 -480 771 158 9 0 chr1 42820640 42820754 -199843599 - FLAM_C SINE Alu -18 115 1 1467 162 81 7 chr1 42820760 42821032 -199843321 - AluJb SINE Alu -8 304 13 407 267 69 8 chr1 42821145 42821276 -199843077 - MIR SINE MIR -53 209 71 21 36 0 0 chr1 42821341 42821369 -199842984 + AT_rich Low_complexity Low_complexity 1 28 0 808 159 0 38 chr1 42821538 42821670 -199842683 - FLAM_C SINE Alu -6 127 1 216 87 0 65 chr1 42821677 42821723 -199842630 + (TTTTTA)n Simple_repeat Simple_repeat 2 44 0 217 301 43 11 chr1 42821862 42821955 -199842398 - L3 LINE CR1 -104 1473 1378 180 0 0 0 chr1 42822038 42822058 -199842295 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2214 115 0 0 chr1 42822063 42822350 -199842003 - AluSx SINE Alu -25 287 1 208 259 138 26 chr1 42822455 42822571 -199841782 - MIR SINE MIR -6 256 128 483 226 130 138 chr1 42822651 42822963 -199841390 - L1ME4a LINE L1 -2 6119 5806 2893 3 0 0 chr1 42822963 42823270 -199841083 - AluYb8 SINE Alu -11 307 1 1003 203 0 0 chr1 42823275 42823438 -199840915 - FRAM SINE Alu -2 164 2 483 226 130 138 chr1 42823438 42823857 -199840496 - L1ME4a LINE L1 -319 5802 5388 842 264 183 17 chr1 42824304 42824653 -199839700 - L2 LINE L2 -48 3265 2859 1818 164 4 4 chr1 42827815 42828096 -199836257 - AluJb SINE Alu -31 281 1 331 280 114 38 chr1 42828152 42828243 -199836110 - MIR3 SINE MIR -39 169 64 1821 150 7 0 chr1 42828243 42828523 -199835830 - AluSg SINE Alu -6 304 23 331 280 114 38 chr1 42828523 42828563 -199835790 - MIR3 SINE MIR -144 64 28 1700 114 0 0 chr1 42828731 42828959 -199835394 - AluSg/x SINE Alu 0 310 83 795 195 0 0 chr1 42829460 42829588 -199834765 - FLAM_A SINE Alu -5 128 1 21 0 0 0 chr1 42829795 42829816 -199834537 + AT_rich Low_complexity Low_complexity 1 21 0 6780 124 45 21 chr1 42829816 42830000 -199834353 - L1MA2 LINE L1 -6 6298 6120 2387 85 0 0 chr1 42830000 42830295 -199834058 + AluY SINE Alu 2 296 -15 1686 167 30 10 chr1 42830300 42830599 -199833754 + AluJb SINE Alu 1 305 -7 6780 124 45 21 chr1 42830599 42831489 -199832864 - L1MA2 LINE L1 -187 6117 5160 2315 79 33 3 chr1 42831489 42831792 -199832561 - AluSx SINE Alu 0 312 1 6780 124 45 21 chr1 42831792 42832391 -199831962 - L1MA2 LINE L1 -1144 5160 4577 2359 88 0 19 chr1 42832456 42832763 -199831590 - AluSq SINE Alu -12 301 1 2298 84 0 17 chr1 42832768 42833064 -199831289 - AluSx SINE Alu -20 292 2 324 305 133 20 chr1 42833990 42834141 -199830212 - MIR SINE MIR -75 187 20 539 229 167 0 chr1 42835662 42835806 -199828547 + MIR SINE MIR 2 169 -93 889 220 152 67 chr1 42837795 42838250 -199826103 - MLT1H LTR MaLR 0 549 12 2203 128 13 0 chr1 42838291 42838597 -199825756 + AluSx SINE Alu 1 310 -2 606 106 35 9 chr1 42838597 42838710 -199825643 + GA-rich Low_complexity Low_complexity 1 116 0 2381 58 0 14 chr1 42838776 42839070 -199825283 - AluY SINE Alu -21 290 1 23 33 0 0 chr1 42840468 42840498 -199823855 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr1 42841580 42841608 -199822745 + AT_rich Low_complexity Low_complexity 1 28 0 898 165 88 6 chr1 42842740 42842910 -199821443 + AluSc SINE Alu 109 292 -17 2334 70 0 20 chr1 42842985 42843308 -199821045 - AluY SINE Alu 0 311 1 2212 112 0 0 chr1 42843310 42843606 -199820747 - AluY SINE Alu -14 297 2 234 321 73 9 chr1 42843636 42843745 -199820608 + L2 LINE L2 2723 2838 -476 267 212 9 159 chr1 42843835 42843864 -199820489 + L2 LINE L2 3177 3209 -63 1783 170 0 7 chr1 42843864 42844200 -199820153 - AluJb SINE Alu 0 334 1 267 212 9 159 chr1 42844200 42844281 -199820072 + L2 LINE L2 3209 3272 0 1520 113 5 14 chr1 42845253 42845466 -199818887 + AluSg/x SINE Alu 82 292 -18 2058 91 0 78 chr1 42845471 42845791 -199818562 + AluSx SINE Alu 1 295 -17 1097 32 0 0 chr1 42845921 42846046 -199818307 - L1PA5 LINE L1 0 6154 6030 781 11 0 0 chr1 42846476 42846567 -199817786 - L1PA5 LINE L1 -147 6007 5917 2429 87 3 0 chr1 42846848 42847158 -199817195 - AluY SINE Alu 0 311 1 612 274 37 12 chr1 42847257 42847421 -199816932 - MIR3 SINE MIR -6 202 35 2365 108 0 0 chr1 42847542 42847848 -199816505 - AluSx SINE Alu -6 306 1 2290 95 3 3 chr1 42848428 42848723 -199815630 + AluSp SINE Alu 1 295 -18 692 190 58 0 chr1 42849175 42849296 -199815057 + FLAM_C SINE Alu 1 128 -5 208 121 0 0 chr1 42849300 42849333 -199815020 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 2147 100 4 0 chr1 42849906 42850227 -199814126 - AluSx SINE Alu 0 322 1 396 283 19 47 chr1 42851515 42851710 -199812643 + MIR SINE MIR 1 187 -59 394 378 110 20 chr1 42851769 42852168 -199812185 - L2 LINE L2 -12 3260 2826 1997 129 24 3 chr1 42852272 42852566 -199811787 + AluSg SINE Alu 1 300 -10 254 332 125 55 chr1 42852619 42852908 -199811445 - L2 LINE L2 -76 3196 2888 735 239 58 34 chr1 42852979 42853184 -199811169 + MIR SINE MIR 16 225 -37 1535 196 7 11 chr1 42853189 42853470 -199810883 + AluJo SINE Alu 1 280 -32 212 376 85 16 chr1 42853552 42853741 -199810612 - L2 LINE L2 -683 2631 2430 698 117 131 15 chr1 42853792 42853929 -199810424 + SVA Other Other 109 261 -1125 402 260 0 0 chr1 42903929 42904029 -199760324 - AluSg/x SINE Alu -117 183 84 1134 179 18 9 chr1 42904029 42904247 -199760106 - AluJo SINE Alu -92 220 1 21 0 0 0 chr1 42904292 42904313 -199760040 + AT_rich Low_complexity Low_complexity 1 21 0 1427 169 4 8 chr1 42905984 42906220 -199758133 + AluJb SINE Alu 59 293 -19 2021 139 3 3 chr1 42906385 42906680 -199757673 + AluSx SINE Alu 1 295 -17 2274 96 3 0 chr1 42906680 42906972 -199757381 + AluY SINE Alu 1 293 -18 2509 71 0 0 chr1 42907120 42907417 -199756936 - AluY SINE Alu -14 297 1 207 0 0 0 chr1 42908441 42908464 -199755889 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1608 150 21 28 chr1 42910245 42910531 -199753822 - AluJo SINE Alu -26 286 3 550 303 47 103 chr1 42910561 42911028 -199753325 - L2 LINE L2 -51 3221 2782 1508 99 19 28 chr1 42911755 42911967 -199752386 - AluSg/x SINE Alu -18 294 85 2207 131 0 3 chr1 42912180 42912486 -199751867 - AluSx SINE Alu -7 305 1 1531 153 0 8 chr1 42913121 42913363 -199750990 - AluSx SINE Alu -17 295 56 807 312 149 54 chr1 42913844 42914932 -199749421 + L2 LINE L2 1856 3047 -225 1865 150 22 0 chr1 42914982 42915278 -199749075 - AluSx SINE Alu 0 312 20 195 255 85 0 chr1 42915469 42915516 -199748837 - L2 LINE L2 0 3272 3222 658 182 318 42 chr1 42916042 42916059 -199748294 - AluJo SINE Alu 0 312 301 2510 69 3 0 chr1 42916059 42916362 -199747991 - AluSc SINE Alu -5 304 1 658 182 318 42 chr1 42916362 42916558 -199747795 - AluJo SINE Alu -11 301 40 2223 112 0 3 chr1 42916975 42917269 -199747084 - AluSc SINE Alu -16 293 1 345 301 34 29 chr1 42917365 42917540 -199746813 + MIR SINE MIR 42 216 -46 181 295 16 0 chr1 42917751 42917812 -199746541 + L3 LINE CR1 771 832 -745 182 257 203 14 chr1 42919957 42920031 -199744322 - L2 LINE L2 -39 3274 3187 302 95 0 0 chr1 42920244 42920286 -199744067 + L1MA8 LINE L1 6071 6112 -179 2401 65 0 52 chr1 42920287 42920612 -199743741 + AluY SINE Alu 1 308 -3 229 65 0 0 chr1 42920613 42920659 -199743694 - LTR66 LTR ERVL -171 439 394 216 200 0 0 chr1 42920659 42920704 -199743649 + (CA)n Simple_repeat Simple_repeat 2 46 0 831 103 0 0 chr1 42920705 42920821 -199743532 + L1MA8 LINE L1 6100 6215 -76 741 196 0 0 chr1 42921155 42921267 -199743086 + FLAM_C SINE Alu 3 114 -29 207 0 0 0 chr1 42921270 42921293 -199743060 + (TAA)n Simple_repeat Simple_repeat 3 25 0 36 0 0 0 chr1 42921293 42921329 -199743024 + AT_rich Low_complexity Low_complexity 1 36 0 223 315 90 18 chr1 42922331 42922442 -199741911 - MIR SINE MIR -6 256 138 255 275 28 73 chr1 42922442 42922551 -199741802 - MLT1I LTR MaLR -62 347 244 515 270 27 40 chr1 42922601 42922749 -199741604 - MLT1I LTR MaLR -263 146 1 431 297 83 44 chr1 42922749 42922978 -199741375 - L1ME LINE L1 -512 5650 5413 341 266 11 0 chr1 42922976 42923070 -199741283 - L1MC4 LINE L1 0 8042 7948 * 4166 257 105 49 chr1 42923111 42924191 -199740162 - L1MC4a LINE L1 -744 5402 4384 2156 110 9 35 chr1 42924191 42924510 -199739843 - AluSq SINE Alu -2 311 1 4166 257 105 49 chr1 42924510 42925094 -199739259 - L1MC4a LINE L1 -1762 4384 3834 2669 27 0 0 chr1 42925094 42925390 -199738963 - AluY SINE Alu -15 296 1 4166 257 105 49 chr1 42925390 42925630 -199738723 - L1MC4a LINE L1 -2312 3834 3609 1265 126 40 89 chr1 42925630 42925678 -199738675 + MER46A DNA MER2_type 2 51 -2680 2287 95 3 3 chr1 42925678 42925974 -199738379 - AluY SINE Alu -15 296 1 1265 126 40 89 chr1 42925974 42926172 -199738181 + MER46A DNA MER2_type 51 236 0 4166 257 105 49 chr1 42926172 42926267 -199738086 - L1MC4a LINE L1 -2537 3609 4804 2359 108 0 0 chr1 42926267 42926574 -199737779 - AluSx SINE Alu -5 307 1 4166 257 105 49 chr1 42926574 42926817 -199737536 - L1MC4a LINE L1 -1341 4805 4577 1073 139 12 24 chr1 42926930 42927095 -199737258 - FRAM SINE Alu 0 166 4 784 124 0 0 chr1 42927295 42927400 -199736953 - AluSx SINE Alu -14 296 192 1054 128 0 0 chr1 42927401 42927542 -199736811 - AluSx SINE Alu -171 141 1 2210 125 3 0 chr1 42927542 42927845 -199736508 - AluSx SINE Alu -8 304 1 247 247 99 0 chr1 42927859 42927940 -199736413 - L1MC4a LINE L1 -1924 4222 4134 31 26 0 0 chr1 42927941 42927979 -199736374 + AT_rich Low_complexity Low_complexity 1 38 0 825 136 0 0 chr1 42927979 42928097 -199736256 - AluJb SINE Alu -194 118 1 326 258 55 47 chr1 42928129 42928257 -199736096 - MIR SINE MIR -102 160 32 1224 128 0 21 chr1 42928405 42928592 -199735761 + AluSq SINE Alu 124 306 -7 2187 129 0 0 chr1 42929098 42929400 -199734953 - AluSx SINE Alu -10 302 1 842 152 8 15 chr1 42929602 42929734 -199734619 - FLAM_C SINE Alu 0 133 3 186 306 0 0 chr1 42930180 42930229 -199734124 + MIR SINE MIR 87 135 -73 350 220 68 51 chr1 42931085 42931203 -199733150 - L3 LINE CR1 -11 1566 1447 513 237 0 103 chr1 42931376 42931532 -199732821 - MER119 DNA MER1_type 0 583 444 308 231 108 0 chr1 42931519 42931584 -199732769 - MER119 DNA MER1_type -449 134 63 * 2269 99 0 10 chr1 42931636 42931939 -199732414 + AluSg1 SINE Alu 1 300 -9 2159 119 0 16 chr1 42932406 42932717 -199731636 - AluSx SINE Alu -6 306 1 338 254 14 0 chr1 42932884 42932955 -199731398 + L2 LINE L2 3242 3313 0 1549 114 8 61 chr1 42933550 42933623 -199730730 + AluSg SINE Alu 62 137 -173 2271 66 45 14 chr1 42933623 42933910 -199730443 + AluY SINE Alu 1 296 -15 1549 114 8 61 chr1 42933910 42934099 -199730254 + AluSg SINE Alu 137 310 0 2225 118 0 0 chr1 42934169 42934466 -199729887 + AluSx SINE Alu 1 297 -15 2273 114 0 0 chr1 42934558 42934865 -199729488 + AluSx SINE Alu 1 307 -5 1084 205 51 28 chr1 42935116 42935331 -199729022 - MER58A DNA MER1_type -3 221 2 2450 60 0 13 chr1 42935428 42935748 -199728605 + AluY SINE Alu 2 311 0 2503 85 0 0 chr1 42935892 42936199 -199728154 - AluY SINE Alu -4 307 1 183 264 33 44 chr1 42937128 42937219 -199727134 - MIR3 SINE MIR -115 93 4 1324 183 95 39 chr1 42937314 42937598 -199726755 - AluJo SINE Alu -12 300 1 2077 118 3 7 chr1 42937606 42937910 -199726443 - AluSx SINE Alu -9 303 1 2305 117 0 0 chr1 42938320 42938620 -199725733 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr1 42941058 42941087 -199723266 + AT_rich Low_complexity Low_complexity 1 29 0 1795 159 3 20 chr1 42941223 42941519 -199722834 + AluJo SINE Alu 1 291 -21 22 0 0 0 chr1 42941642 42941664 -199722689 + AT_rich Low_complexity Low_complexity 1 22 0 2414 65 7 0 chr1 42941664 42941955 -199722398 - AluSp SINE Alu -20 293 1 1505 167 4 34 chr1 42941955 42942218 -199722135 - AluJo SINE Alu -8 304 50 1446 146 13 0 chr1 42942219 42942445 -199721908 + AluJo SINE Alu 73 301 -11 291 232 39 40 chr1 42942777 42942870 -199721483 + MIR SINE MIR 36 127 -81 1876 121 81 0 chr1 42943021 42943294 -199721059 + AluY SINE Alu 1 295 -16 2122 122 7 0 chr1 42943437 42943732 -199720621 + AluSq SINE Alu 1 297 -16 1725 157 103 42 chr1 42943953 42944194 -199720159 - Charlie1b DNA MER1_type -2242 519 294 2432 72 0 0 chr1 42944194 42944487 -199719866 + AluY SINE Alu 1 293 -18 1725 157 103 42 chr1 42944487 42944673 -199719680 - Charlie1b DNA MER1_type -2467 294 66 964 212 31 5 chr1 42944977 42945170 -199719183 - MIR SINE MIR -48 214 17 2130 122 0 0 chr1 42945671 42945966 -199718387 - AluSx SINE Alu -17 295 1 1902 122 0 59 chr1 42946844 42947026 -199717327 - AluJo SINE Alu -11 301 145 2409 90 0 0 chr1 42947026 42947326 -199717027 - AluSg SINE Alu -8 302 3 1902 122 0 59 chr1 42947326 42947463 -199716890 - AluJo SINE Alu -167 145 1 21 0 0 0 chr1 42947508 42947529 -199716824 + AT_rich Low_complexity Low_complexity 1 21 0 212 292 31 31 chr1 42947595 42947691 -199716662 + MIR SINE MIR 161 256 -6 2164 120 13 3 chr1 42949465 42949774 -199714579 - AluJb SINE Alu 0 312 1 2294 114 0 0 chr1 42949950 42950258 -199714095 - AluSx SINE Alu -4 308 1 2501 54 0 13 chr1 42951424 42951722 -199712631 + AluY SINE Alu 1 294 -17 252 0 0 0 chr1 42953795 42953823 -199710530 + (TA)n Simple_repeat Simple_repeat 2 29 0 1551 188 17 10 chr1 42954125 42954423 -199709930 + AluJb SINE Alu 1 300 -12 402 180 30 0 chr1 42954426 42954526 -199709827 + GA-rich Low_complexity Low_complexity 2 104 0 354 23 0 0 chr1 42954838 42954881 -199709472 + (ATTG)n Simple_repeat Simple_repeat 1 43 0 2206 113 0 3 chr1 42954938 42955240 -199709113 + AluSx SINE Alu 1 301 -11 248 94 0 0 chr1 42955631 42955663 -199708690 - MER20 DNA MER1_type -2 217 186 784 150 288 0 chr1 42955718 42955871 -199708482 - MER20 DNA MER1_type -19 200 4 2072 97 66 3 chr1 42956657 42956946 -199707407 + AluSc SINE Alu 1 307 -2 2218 144 19 25 chr1 42957781 42957878 -199706475 - MER47A DNA MER2_type -1957 366 270 2374 85 7 0 chr1 42957878 42958173 -199706180 + AluSq SINE Alu 1 297 -16 2218 144 19 25 chr1 42958173 42958442 -199705911 - MER47A DNA MER2_type -2053 270 2 443 272 41 29 chr1 42958527 42958680 -199705673 - MIR SINE MIR -27 181 23 1918 164 7 3 chr1 42958738 42959037 -199705316 - AluJb SINE Alu -12 300 1 494 197 145 34 chr1 42959039 42959156 -199705197 + MER20 DNA MER1_type 57 186 -33 2388 88 0 7 chr1 42959970 42960275 -199704078 - AluSx SINE Alu -9 303 1 685 282 14 29 chr1 42960772 42960981 -199703372 + MIR SINE MIR 1 206 -56 2017 141 0 7 chr1 42961081 42961394 -199702959 - AluJb SINE Alu 0 312 13 203 271 0 0 chr1 42961690 42961749 -199702604 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2199 112 3 0 chr1 42962528 42962815 -199701538 + AluSx SINE Alu 1 288 -24 212 267 17 17 chr1 42962926 42962986 -199701367 + L2 LINE L2 3018 3077 -195 307 242 15 0 chr1 42963017 42963083 -199701270 + L2 LINE L2 3246 3312 -1 289 301 104 12 chr1 42963070 42963243 -199701110 - L2 LINE L2 -1146 2168 1980 * 309 280 136 51 chr1 42963250 42963637 -199700716 + L2 LINE L2 1811 2237 -1077 2208 96 0 3 chr1 42963637 42963997 -199700356 - AluSx SINE Alu 0 359 1 309 280 136 51 chr1 42963997 42964019 -199700334 + L2 LINE L2 2237 2256 -1058 2126 107 7 0 chr1 42964445 42964784 -199699569 + AluSx SINE Alu 1 341 0 1709 144 82 17 chr1 42964812 42965104 -199699249 + AluSx SINE Alu 2 312 0 1499 204 29 4 chr1 42965104 42965383 -199698970 - AluJo SINE Alu -26 286 1 1991 103 27 20 chr1 42967056 42967357 -199696996 + AluSx SINE Alu 1 303 -9 699 300 143 22 chr1 42967618 42967988 -199696365 - L3 LINE CR1 -2 1575 1161 196 277 0 108 chr1 42968048 42968131 -199696222 - MIR3 SINE MIR -6 202 129 182 71 0 95 chr1 42969519 42969561 -199694792 + (CCCCCG)n Simple_repeat Simple_repeat 4 41 0 28 29 0 0 chr1 42969609 42969644 -199694709 + GC_rich Low_complexity Low_complexity 1 35 0 306 325 95 54 chr1 42969801 42970118 -199694235 - L1M2 LINE L1 -5654 1195 866 427 279 203 60 chr1 42973910 42974886 -199689467 + L1M2 LINE L1 715 1627 -5541 460 283 41 21 chr1 42975794 42975924 -199688429 + MIR3 SINE MIR 54 189 -19 2181 54 6 108 chr1 42975924 42976259 -199688094 - AluY SINE Alu -10 301 1 460 283 41 21 chr1 42976259 42976273 -199688080 + MIR3 SINE MIR 189 201 -7 185 354 61 0 chr1 42976464 42976546 -199687807 + L2 LINE L2 3186 3272 0 829 169 8 0 chr1 42976964 42977094 -199687259 + FLAM_C SINE Alu 3 133 0 307 181 42 28 chr1 42977222 42977294 -199687059 + MIR3 SINE MIR 111 183 -25 1657 137 21 97 chr1 42978147 42978476 -199685877 - AluYb8 SINE Alu -14 304 1 395 193 121 50 chr1 42978481 42978621 -199685732 - L2 LINE L2 -15 3298 3149 786 290 110 54 chr1 42978649 42979167 -199685186 - L2 LINE L2 -725 2589 2043 2082 139 3 3 chr1 42979179 42979474 -199684879 + AluSx SINE Alu 1 295 -17 1443 143 0 9 chr1 42979970 42980187 -199684166 + MER46A DNA MER2_type 22 236 0 1960 133 30 0 chr1 42980222 42980397 -199683956 - AluSq SINE Alu -4 309 120 396 0 0 0 chr1 42980397 42980441 -199683912 + (TG)n Simple_repeat Simple_repeat 2 45 0 1960 133 30 0 chr1 42980441 42980565 -199683788 - AluSq SINE Alu -193 120 1 857 216 95 0 chr1 42980590 42980780 -199683573 + MER3 DNA MER1_type 2 209 0 2504 70 0 0 chr1 42981463 42981763 -199682590 - AluY SINE Alu -11 300 1 2480 60 0 3 chr1 42982391 42982692 -199681661 + AluY SINE Alu 1 300 -11 808 131 6 50 chr1 42983900 42983952 -199680401 - L1MA9 LINE L1 0 6312 6259 2585 53 0 0 chr1 42983952 42984251 -199680102 + AluY SINE Alu 1 299 -12 808 131 6 50 chr1 42984251 42984358 -199679995 - L1MA9 LINE L1 -53 6259 6160 262 333 59 53 chr1 42985683 42986004 -199678349 + L2 LINE L2 2401 2723 -591 270 217 0 0 chr1 42986048 42986094 -199678259 - tRNA-Met-e tRNA tRNA -29 46 1 32 43 0 0 chr1 42986704 42986750 -199677603 + AT_rich Low_complexity Low_complexity 1 46 0 224 265 0 0 chr1 42986949 42986998 -199677355 + L2 LINE L2 3215 3263 -9 191 259 99 37 chr1 42987737 42987818 -199676535 + MIR SINE MIR 68 153 -109 1637 166 4 11 chr1 42992303 42992574 -199671779 + AluJo SINE Alu 14 282 -30 2239 101 0 0 chr1 42994396 42994683 -199669670 + AluSx SINE Alu 1 287 -25 354 260 100 33 chr1 42994797 42994947 -199669406 - L1ME4a LINE L1 -11 6110 5951 2319 103 0 3 chr1 42997899 42998210 -199666143 - AluSx SINE Alu -2 310 1 2077 112 25 11 chr1 42999108 42999394 -199664959 + AluSx SINE Alu 8 297 -15 2346 97 0 3 chr1 42999399 42999707 -199664646 + AluSx SINE Alu 1 307 -5 2020 126 41 0 chr1 43000210 43000504 -199663849 - AluSx SINE Alu -6 306 1 238 324 72 0 chr1 43000528 43000667 -199663686 - L1ME4a LINE L1 -4 6117 5969 1936 145 23 0 chr1 43000675 43001004 -199663349 - AluJb SINE Alu 0 336 1 203 139 47 0 chr1 43001396 43001439 -199662914 + (TA)n Simple_repeat Simple_repeat 2 46 0 2550 51 0 3 chr1 43004652 43004946 -199659407 + AluY SINE Alu 1 293 -18 26 0 0 0 chr1 43004964 43004990 -199659363 + AT_rich Low_complexity Low_complexity 1 26 0 228 224 61 0 chr1 43006042 43006091 -199658262 - L2 LINE L2 -3 3310 3259 1738 169 14 7 chr1 43006276 43006572 -199657781 + AluJo SINE Alu 1 298 -14 261 340 150 7 chr1 43006603 43006750 -199657603 + L3 LINE CR1 1306 1473 -104 24 100 0 0 chr1 43006854 43006934 -199657419 + AT_rich Low_complexity Low_complexity 1 80 0 21 57 0 0 chr1 43007069 43007104 -199657249 + AT_rich Low_complexity Low_complexity 1 35 0 228 239 101 28 chr1 43007121 43007230 -199657123 - L1ME4a LINE L1 -49 6072 5956 702 241 83 55 chr1 43009711 43009964 -199654389 - MIR SINE MIR 0 262 3 2536 63 0 0 chr1 43009995 43010295 -199654058 - AluY SINE Alu -10 301 2 1631 166 51 20 chr1 43010296 43010458 -199653895 - AluJo SINE Alu -7 305 128 2163 119 0 13 chr1 43010458 43010760 -199653593 - AluSg SINE Alu -12 298 1 1631 166 51 20 chr1 43010760 43010893 -199653460 - AluJo SINE Alu -184 128 1 325 271 93 47 chr1 43010895 43011002 -199653351 - MIR3 SINE MIR -51 157 46 2657 56 0 0 chr1 43011205 43011509 -199652844 - AluY SINE Alu -7 304 1 278 333 90 0 chr1 43012346 43012457 -199651896 - MIR SINE MIR -105 157 37 924 118 0 29 chr1 43012470 43012606 -199651747 - FLAM_C SINE Alu -1 132 1 915 185 25 163 chr1 43014719 43014995 -199649358 - MER8 DNA MER2_type 0 239 2 1977 130 10 7 chr1 43015117 43015417 -199648936 + AluSx SINE Alu 1 301 -11 1359 243 3 12 chr1 43015766 43016099 -199648254 - MLT1E3 LTR MaLR 0 624 295 537 194 105 8 chr1 43016150 43016274 -199648079 - MLT1E3 LTR MaLR -518 136 1 1506 133 142 47 chr1 43016571 43016650 -199647703 + MER47A DNA MER2_type 20 90 -2233 2227 117 0 0 chr1 43016650 43016941 -199647412 + AluSx SINE Alu 1 291 -21 1506 133 142 47 chr1 43016941 43017178 -199647175 + MER47A DNA MER2_type 90 366 0 765 295 181 45 chr1 43017358 43018404 -199645949 + L2 LINE L2 1796 3018 -254 2554 151 26 10 chr1 43018404 43018822 -199645531 - MSTB LTR MaLR 0 426 2 765 295 181 45 chr1 43018822 43018896 -199645457 + L2 LINE L2 3018 3081 -191 311 181 42 28 chr1 43021784 43021856 -199642497 - MIR3 SINE MIR -25 183 111 799 169 8 0 chr1 43021984 43022114 -199642239 - FLAM_C SINE Alu 0 133 3 194 366 61 0 chr1 43022532 43022614 -199641739 - L2 LINE L2 0 3272 3186 464 283 41 21 chr1 43022805 43022819 -199641534 - MIR3 SINE MIR -7 201 189 2237 51 6 110 chr1 43022819 43023155 -199641198 + AluY SINE Alu 1 301 -10 464 283 41 21 chr1 43023155 43023285 -199641068 - MIR3 SINE MIR -19 189 54 182 257 203 14 chr1 43027515 43027589 -199636764 - L2 LINE L2 -39 3274 3187 281 95 0 0 chr1 43027802 43027844 -199636509 + L1MA8 LINE L1 6071 6112 -179 2434 65 0 52 chr1 43027845 43028170 -199636183 + AluY SINE Alu 1 308 -3 303 200 0 0 chr1 43028174 43028224 -199636129 - L1MC4 LINE L1 -1340 6702 6653 783 103 0 0 chr1 43028247 43028363 -199635990 + L1MA8 LINE L1 6100 6215 -76 716 196 0 0 chr1 43028697 43028809 -199635544 + FLAM_C SINE Alu 3 114 -29 207 0 0 0 chr1 43028812 43028835 -199635518 + (TAA)n Simple_repeat Simple_repeat 3 25 0 40 0 0 0 chr1 43028835 43028875 -199635478 + AT_rich Low_complexity Low_complexity 1 40 0 249 313 89 18 chr1 43029877 43029989 -199634364 - MIR SINE MIR -6 256 137 457 297 7 20 chr1 43030147 43030295 -199634058 - MLT1I LTR MaLR -263 146 1 387 297 83 44 chr1 43030295 43030524 -199633829 - L1ME LINE L1 -512 5650 5413 293 263 11 11 chr1 43030522 43030617 -199633736 - L1MC4 LINE L1 0 8042 7948 * 2188 265 130 21 chr1 43030658 43031736 -199632617 - L1MC4a LINE L1 -859 6949 5755 2237 98 9 35 chr1 43031742 43032058 -199632295 - AluSq SINE Alu -1 312 5 414 189 27 115 chr1 43032063 43032211 -199632142 + L1MD3 LINE L1 7846 7980 -15 337 284 60 65 chr1 43032233 43032465 -199631888 + L2 LINE L2 3083 3313 0 264 284 78 17 chr1 43033390 43033506 -199630847 - MIR SINE MIR -121 141 19 2590 68 0 0 chr1 43033525 43033835 -199630518 + AluY SINE Alu 1 310 -1 292 215 152 0 chr1 43037079 43037158 -199627195 + MIR SINE MIR 48 138 -70 233 345 43 0 chr1 43037721 43037837 -199626516 + MIR SINE MIR 27 147 -115 216 157 0 59 chr1 43038056 43038107 -199626246 - L2 LINE L2 -580 2734 2687 1718 260 71 8 chr1 43038107 43038695 -199625658 + L1MC3 LINE L1 7097 7721 -64 808 144 0 0 chr1 43038699 43038817 -199625536 - FRAM SINE Alu -17 159 42 1170 302 148 21 chr1 43038888 43039940 -199624413 - L2 LINE L2 -614 2700 1515 21 36 0 0 chr1 43040926 43040954 -199623399 + GC_rich Low_complexity Low_complexity 1 28 0 1712 172 16 41 chr1 43042508 43042828 -199621525 - AluJb SINE Alu 0 312 1 1830 155 30 30 chr1 43042850 43043147 -199621206 - AluSx SINE Alu -15 297 1 200 275 0 0 chr1 43043627 43043667 -199620686 + (CGTG)n Simple_repeat Simple_repeat 4 43 0 954 149 43 14 chr1 43044293 43044505 -199619848 + AluJb SINE Alu 1 300 -12 224 324 29 0 chr1 43044516 43044584 -199619769 - L2 LINE L2 -566 2748 2679 2391 100 0 10 chr1 43044910 43045221 -199619132 + AluSx SINE Alu 1 308 -4 1718 189 3 29 chr1 43045825 43046131 -199618222 + AluJb SINE Alu 1 298 -14 2344 80 3 13 chr1 43046606 43046908 -199617445 + AluSp SINE Alu 1 299 -14 2151 108 13 19 chr1 43048028 43048335 -199616018 + AluSx SINE Alu 1 305 -7 243 188 165 22 chr1 43049478 43049576 -199614777 - MIR SINE MIR -64 144 44 2542 66 3 0 chr1 43050487 43050792 -199613561 + AluY SINE Alu 1 306 -5 2059 123 10 3 chr1 43051511 43051804 -199612549 + AluSq SINE Alu 1 295 -18 880 245 80 13 chr1 43053228 43053465 -199610888 - MIR SINE MIR -5 257 5 1563 180 0 26 chr1 43053784 43054056 -199610297 + AluJo SINE Alu 24 288 -24 582 148 148 13 chr1 43055229 43055384 -199608969 - L1MB3 LINE L1 0 6183 6008 269 356 119 23 chr1 43057152 43057371 -199606982 - L2 LINE L2 -9 3263 3024 746 168 0 38 chr1 43057376 43057507 -199606846 + FLAM_C SINE Alu 1 126 -7 2087 136 0 7 chr1 43057511 43057813 -199606540 + AluSg SINE Alu 1 300 -10 2156 132 7 0 chr1 43057818 43058122 -199606231 + AluSx SINE Alu 1 306 -6 270 154 8 92 chr1 43058148 43058224 -199606129 + Alu SINE Alu 242 301 0 188 369 71 12 chr1 43058224 43058392 -199605961 - L2 LINE L2 -238 3034 2857 1309 140 0 0 chr1 43058712 43058890 -199605463 + AluJb SINE Alu 122 299 -13 185 303 76 48 chr1 43058928 43059073 -199605280 - L2 LINE L2 -653 2661 2513 282 302 65 21 chr1 43059138 43059402 -199604951 - L2 LINE L2 -1009 2305 1985 2351 88 0 10 chr1 43059692 43059998 -199604355 + AluSc SINE Alu 1 303 -6 235 221 141 37 chr1 43059998 43060161 -199604192 + L1ME LINE L1 5645 5824 -297 526 120 0 0 chr1 43060213 43060288 -199604065 + AluS SINE Alu 1 75 -238 218 121 0 86 chr1 43060417 43060475 -199603878 + (TA)n Simple_repeat Simple_repeat 1 53 0 1880 137 14 17 chr1 43060659 43060952 -199603401 - AluSx SINE Alu -20 292 1 2136 106 17 7 chr1 43061018 43061320 -199603033 + AluSp SINE Alu 8 312 -1 2116 109 3 33 chr1 43061379 43061683 -199602670 + AluSx SINE Alu 2 296 -16 813 212 24 24 chr1 43061972 43062137 -199602216 + AluJo SINE Alu 127 291 -21 2494 70 0 3 chr1 43062142 43062444 -199601909 + AluY SINE Alu 9 309 -2 2236 122 3 0 chr1 43062450 43062753 -199601600 + AluSx SINE Alu 1 304 -8 2326 97 0 0 chr1 43062753 43063042 -199601311 + AluSc SINE Alu 1 289 -20 260 136 23 0 chr1 43063042 43063086 -199601267 + AluSp SINE Alu 135 179 -124 403 193 0 33 chr1 43063189 43063300 -199601053 - AluS SINE Alu -209 94 6 2536 64 3 10 chr1 43063445 43063758 -199600595 + AluY SINE Alu 1 311 0 1256 297 39 41 chr1 43063772 43064085 -199600268 + LTR16B LTR ERVL 1 314 -150 2238 113 124 27 chr1 43064085 43064121 -199600232 + MER31A LTR ERV1 1 32 -453 2346 108 0 3 chr1 43064121 43064427 -199599926 - AluSx SINE Alu -7 305 1 2238 113 124 27 chr1 43064427 43064832 -199599521 + MER31A LTR ERV1 32 485 0 1256 297 39 41 chr1 43064832 43064983 -199599370 + LTR16B LTR ERVL 314 464 0 2239 107 0 0 chr1 43065034 43065325 -199599028 - AluSc SINE Alu -12 297 7 1839 125 10 74 chr1 43065334 43065509 -199598844 - AluJo SINE Alu -20 292 144 2197 125 0 0 chr1 43065509 43065805 -199598548 + AluSx SINE Alu 1 296 -16 1839 125 10 74 chr1 43065805 43065941 -199598412 - AluJo SINE Alu -168 144 1 2346 64 4 4 chr1 43066237 43066548 -199597805 + AluSc SINE Alu 1 311 0 1229 159 19 42 chr1 43066651 43066865 -199597488 - AluJo SINE Alu -103 209 1 279 281 71 92 chr1 43066907 43067103 -199597250 - L2 LINE L2 -91 3222 3031 2313 93 7 0 chr1 43067137 43067426 -199596927 - AluSx SINE Alu -21 291 1 303 296 56 7 chr1 43067428 43067570 -199596783 + L2 LINE L2 3165 3313 0 1007 262 61 45 chr1 43067637 43067772 -199596581 + MER20B DNA MER1_type 42 173 -610 2334 88 3 3 chr1 43067772 43068067 -199596286 - AluSp SINE Alu -18 295 1 1007 262 61 45 chr1 43068067 43068478 -199595875 + MER20B DNA MER1_type 173 644 -139 2254 77 7 17 chr1 43068478 43068776 -199595577 - AluY SINE Alu -16 295 1 1007 262 61 45 chr1 43068776 43068895 -199595458 + MER20B DNA MER1_type 644 760 -23 24 85 0 0 chr1 43068946 43069005 -199595348 + GC_rich Low_complexity Low_complexity 1 59 0 718 296 85 45 chr1 43069376 43069867 -199594486 + L2 LINE L2 2766 3272 0 194 369 42 0 chr1 43070065 43070233 -199594120 - L2 LINE L2 -1613 1701 1527 210 293 49 0 chr1 43070386 43070468 -199593885 + L2 LINE L2 1936 2021 -1293 402 297 55 8 chr1 43070494 43070622 -199593731 - L2 LINE L2 -5 3267 3134 421 220 106 61 chr1 43070758 43070834 -199593519 + MER5A DNA MER1_type 1 87 -102 2537 73 0 0 chr1 43070834 43071137 -199593216 + AluY SINE Alu 1 303 -8 421 220 106 61 chr1 43071137 43071192 -199593161 + MER5A DNA MER1_type 87 138 -51 670 182 0 0 chr1 43071217 43071327 -199593026 - FLAM_A SINE Alu -32 110 1 307 167 0 0 chr1 43071327 43071381 -199592972 + MER5A DNA MER1_type 125 178 -11 253 277 40 30 chr1 43071403 43071504 -199592849 + L2 LINE L2 2174 2275 -1039 293 346 162 20 chr1 43071668 43072026 -199592327 + L2 LINE L2 2867 3275 -38 930 126 28 7 chr1 43072131 43072274 -199592079 - AluJo SINE Alu -166 146 1 2335 102 7 0 chr1 43072302 43072596 -199591757 + AluSc SINE Alu 1 296 -13 358 197 175 7 chr1 43072649 43072786 -199591567 - L2 LINE L2 -712 2602 2443 1025 87 14 7 chr1 43073193 43073331 -199591022 - AluSp/q SINE Alu -13 300 162 218 279 35 47 chr1 43073377 43073463 -199590890 - L2 LINE L2 -1 3312 3228 1393 193 98 3 chr1 43073782 43073798 -199590555 + MSTD LTR MaLR 73 86 -310 1786 58 27 0 chr1 43073798 43074023 -199590330 + AluY SINE Alu 76 306 -5 1393 193 98 3 chr1 43074023 43074302 -199590051 + MSTD LTR MaLR 86 396 0 226 204 23 0 chr1 43074302 43074346 -199590007 - MIR SINE MIR -8 254 210 2192 101 4 0 chr1 43074648 43074950 -199589403 - AluSg SINE Alu 0 303 1 816 156 39 0 chr1 43075038 43075166 -199589187 - FLAM_C SINE Alu -10 133 1 210 259 49 0 chr1 43075233 43075307 -199589046 + MIR SINE MIR 69 134 -74 185 286 63 0 chr1 43075609 43075672 -199588681 - L2 LINE L2 -27 3286 3220 440 157 0 12 chr1 43075731 43075814 -199588539 + AluJo SINE Alu 60 141 -171 822 93 51 0 chr1 43075814 43075932 -199588421 + AluSp SINE Alu 1 124 -189 2400 96 0 0 chr1 43076192 43076493 -199587860 - AluSc SINE Alu -8 301 1 2264 109 3 0 chr1 43076493 43076795 -199587558 - AluSx SINE Alu -8 304 1 1436 119 96 46 chr1 43076799 43077060 -199587293 + LTR12 LTR ERV1 1 274 -440 313 253 11 0 chr1 43077085 43077172 -199587181 + LTR30 LTR ERV1 556 643 -79 736 100 0 0 chr1 43077174 43077274 -199587079 + LTR12 LTR ERV1 615 714 0 327 286 90 16 chr1 43077338 43077527 -199586826 - L1M4 LINE L1 -1837 4309 4107 390 294 109 17 chr1 43077565 43077970 -199586383 - L1M4 LINE L1 -2098 4048 3607 1349 211 148 61 chr1 43078002 43078014 -199586339 - MLT2B1 LTR ERVL 0 520 510 1995 146 3 0 chr1 43078014 43078309 -199586044 + AluSx SINE Alu 1 296 -16 1349 211 148 61 chr1 43078309 43078347 -199586006 - MLT2B1 LTR ERVL -10 510 477 2346 104 0 0 chr1 43078347 43078654 -199585699 - AluSg SINE Alu -3 307 1 1349 211 148 61 chr1 43078654 43079076 -199585277 - MLT2B1 LTR ERVL -43 477 6 2613 11 0 0 chr1 43079506 43079785 -199584568 + AluYa5 SINE Alu 21 299 -12 2300 113 0 3 chr1 43079812 43080123 -199584230 + AluSx SINE Alu 3 312 0 2463 81 0 7 chr1 43080186 43080495 -199583858 + AluY SINE Alu 1 307 -4 1895 154 6 25 chr1 43080512 43080830 -199583523 + AluJb SINE Alu 1 312 0 2441 73 0 3 chr1 43080967 43081269 -199583084 + AluY SINE Alu 1 301 -10 609 281 89 29 chr1 43081287 43081479 -199582874 + MIR SINE MIR 2 214 -48 2397 70 3 3 chr1 43081479 43081777 -199582576 + AluY SINE Alu 1 298 -13 609 281 89 29 chr1 43081777 43081830 -199582523 + MIR SINE MIR 214 262 0 596 324 64 52 chr1 43081825 43082248 -199582105 - L2 LINE L2 -2 3311 2884 * 1800 155 93 21 chr1 43082248 43082634 -199581719 + MLT2C2 LTR ERVL 1 414 -50 478 314 103 26 chr1 43082655 43083264 -199581089 - L2 LINE L2 -425 2889 2234 5181 144 48 88 chr1 43083692 43084875 -199579478 - pTR5 LTR ERV1 -1 2437 136 2426 67 3 0 chr1 43085322 43085656 -199578697 - AluY SINE Alu 0 311 1 2104 117 7 20 chr1 43085900 43086200 -199578153 - AluSq SINE Alu -11 302 7 197 209 0 0 chr1 43086339 43086382 -199577971 + L2 LINE L2 3015 3057 -215 196 250 0 0 chr1 43086590 43086638 -199577715 - L2 LINE L2 -2791 523 476 180 205 26 0 chr1 43086776 43086815 -199577538 + MIR SINE MIR 2 41 -221 1412 181 19 27 chr1 43086872 43087132 -199577221 + AluJo SINE Alu 47 304 -8 334 305 98 59 chr1 43087493 43087696 -199576657 + L2 LINE L2 2576 2786 -528 339 277 172 31 chr1 43087948 43088331 -199576022 + L2 LINE L2 2852 3288 -25 371 203 0 0 chr1 43088466 43088530 -199575823 + MER45 DNA AcHobo 1518 1581 0 304 254 143 8 chr1 43088898 43089024 -199575329 - L1ME4a LINE L1 -30 6091 5949 1712 154 52 67 chr1 43089165 43089336 -199575017 + L1MB7 LINE L1 5696 5868 -316 2155 133 0 0 chr1 43089336 43089638 -199574715 - AluJb SINE Alu -6 306 5 1712 154 52 67 chr1 43089638 43089869 -199574484 + L1MB7 LINE L1 5868 6092 -92 322 226 10 29 chr1 43089885 43089987 -199574366 - L1M3 LINE L1 -338 5830 5731 252 152 0 0 chr1 43090001 43090047 -199574306 + L1MB4 LINE L1 6109 6154 -26 1075 224 30 0 chr1 43090052 43090315 -199574038 - L1MB2 LINE L1 -16 6155 5885 2418 82 0 54 chr1 43090315 43090646 -199573707 - AluSq SINE Alu 0 313 1 1277 177 83 0 chr1 43090647 43090912 -199573441 + L1MB5 LINE L1 5850 6136 -38 3202 180 19 39 chr1 43090937 43091663 -199572690 - L1MB2 LINE L1 -16 6155 5444 2225 114 13 0 chr1 43091824 43092130 -199572223 - AluSx SINE Alu -2 310 1 198 131 66 33 chr1 43092175 43092236 -199572117 + CT-rich Low_complexity Low_complexity 3 65 0 2219 110 0 0 chr1 43092271 43092571 -199571782 - AluSg SINE Alu -10 300 1 330 314 16 21 chr1 43092574 43092765 -199571588 - L1M4 LINE L1 -1479 4667 4478 * 1273 138 75 109 chr1 43092754 43093074 -199571279 - L1MC1 LINE L1 -12 6321 6013 497 125 0 0 chr1 43093077 43093149 -199571204 + AluSx SINE Alu 2 73 -240 1840 198 113 64 chr1 43093149 43093258 -199571095 - LTR12 LTR ERV1 -133 581 479 2116 71 14 7 chr1 43093258 43093538 -199570815 + AluY SINE Alu 1 282 -29 1840 198 113 64 chr1 43093538 43093575 -199570778 - LTR12 LTR ERV1 -235 479 445 450 0 0 0 chr1 43093575 43093625 -199570728 + (TA)n Simple_repeat Simple_repeat 2 51 0 1840 198 113 64 chr1 43093625 43094027 -199570326 - LTR12 LTR ERV1 -269 445 5 1253 158 0 0 chr1 43094027 43094211 -199570142 + AluSx SINE Alu 65 248 -64 243 0 0 0 chr1 43094211 43094238 -199570115 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 850 142 0 0 chr1 43094260 43094401 -199569952 - L1MC1 LINE L1 -314 6019 5879 368 250 36 0 chr1 43094533 43094617 -199569736 + L1MC4 LINE L1 6617 6703 -1339 * 381 308 0 11 chr1 43094569 43094660 -199569693 - L1MC4 LINE L1 -1339 6703 6614 333 250 0 100 chr1 43094587 43094687 -199569666 + L1MC4 LINE L1 6614 6703 -1339 * 261 0 0 0 chr1 43094687 43094716 -199569637 + (CA)n Simple_repeat Simple_repeat 2 30 0 1858 182 7 0 chr1 43094782 43095084 -199569269 - AluJb SINE Alu -8 304 1 305 194 204 0 chr1 43095112 43095210 -199569143 - L2 LINE L2 -1404 1910 1793 182 301 110 0 chr1 43095254 43095327 -199569026 + MIR3 SINE MIR 15 95 -113 2410 102 0 0 chr1 43095561 43095864 -199568489 - AluSx SINE Alu -9 303 1 309 269 150 31 chr1 43095938 43096127 -199568226 - MIR3 SINE MIR 0 208 3 1846 134 9 64 chr1 43097891 43098220 -199566133 + AluJo SINE Alu 1 311 -1 219 36 0 0 chr1 43100068 43100096 -199564257 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1609 105 18 0 chr1 43100158 43100377 -199563976 + AluSg/x SINE Alu 81 303 -7 1846 124 102 4 chr1 43100392 43100667 -199563686 + AluJb SINE Alu 1 302 -10 182 306 0 47 chr1 43100815 43100900 -199563453 - L2 LINE L2 -2 3311 3231 459 257 40 107 chr1 43100910 43101163 -199563190 - L2 LINE L2 -253 3060 2825 2451 79 0 7 chr1 43101422 43101725 -199562628 + AluY SINE Alu 1 301 -10 261 276 76 0 chr1 43102913 43103008 -199561345 - MIR SINE MIR -14 194 81 22 0 0 0 chr1 43103744 43103766 -199560587 + AT_rich Low_complexity Low_complexity 1 22 0 1791 190 3 0 chr1 43104715 43105010 -199559343 + AluJb SINE Alu 1 296 -16 438 318 29 29 chr1 43105163 43105333 -199559020 - MIR3 SINE MIR -9 199 30 1139 158 11 0 chr1 43105848 43106025 -199558328 - AluSg/x SINE Alu 0 310 132 2322 111 7 0 chr1 43106122 43106428 -199557925 + AluSq SINE Alu 1 308 -5 461 259 95 7 chr1 43106513 43106660 -199557693 - MIR SINE MIR 0 262 103 460 270 85 21 chr1 43107980 43108169 -199556184 + MIR SINE MIR 60 260 -2 269 154 19 0 chr1 43108184 43108236 -199556117 + L2 LINE L2 2925 2977 -336 28 48 0 0 chr1 43109079 43109121 -199555232 + GC_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr1 43109597 43109634 -199554719 + GC_rich Low_complexity Low_complexity 1 37 0 33 66 0 0 chr1 43109706 43109767 -199554586 + GC_rich Low_complexity Low_complexity 1 61 0 402 294 50 7 chr1 43110827 43110996 -199553357 - MIR SINE MIR -62 146 24 226 275 63 0 chr1 43111539 43111631 -199552722 + MIR SINE MIR 81 153 -55 246 62 0 0 chr1 43111850 43111882 -199552471 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 2064 146 0 19 chr1 43111891 43112207 -199552146 - AluJo SINE Alu -2 310 1 180 231 0 0 chr1 43112281 43112320 -199552033 - MIR SINE MIR -89 119 81 367 300 56 28 chr1 43113057 43113237 -199551116 + MIR3 SINE MIR 20 204 -4 205 317 50 0 chr1 43113570 43113671 -199550682 + MIR SINE MIR 19 124 -84 571 211 35 14 chr1 43113716 43113858 -199550495 - L2 LINE L2 0 3313 3169 381 316 79 0 chr1 43113984 43114123 -199550230 + MIR SINE MIR 50 199 -63 250 248 15 0 chr1 43114191 43114263 -199550090 - MIR SINE MIR -67 141 76 796 162 138 32 chr1 43114495 43114748 -199549605 - L1ME2 LINE L1 -150 6014 5735 282 364 33 0 chr1 43114792 43114913 -199549440 + MIR SINE MIR 50 174 -88 194 280 215 0 chr1 43115638 43115745 -199548608 + MIR3 SINE MIR 59 188 -20 429 266 156 12 chr1 43117598 43117771 -199546582 + L2 LINE L2 2808 3005 -308 1173 193 9 18 chr1 43117846 43118064 -199546289 + MER20 DNA MER1_type 1 216 -3 1544 189 50 101 chr1 43118130 43118204 -199546149 - MSTB1 LTR MaLR 0 432 356 2171 109 0 3 chr1 43118204 43118506 -199545847 - AluSx SINE Alu -11 301 1 1544 189 50 101 chr1 43118506 43118886 -199545467 - MSTB1 LTR MaLR -76 356 1 844 186 88 52 chr1 43118917 43119111 -199545242 - AluJb SINE Alu -10 302 102 294 167 0 0 chr1 43119129 43119171 -199545182 - AluSp/q SINE Alu -48 255 214 841 188 7 0 chr1 43119171 43119315 -199545038 - AluJo SINE Alu -167 145 1 431 232 43 22 chr1 43119323 43119441 -199544912 - L1MC/D LINE L1 -580 5571 5522 2250 98 7 0 chr1 43119510 43119815 -199544538 + AluSg SINE Alu 1 307 -3 2234 180 81 25 chr1 43119822 43120032 -199544321 + L1MD3 LINE L1 6562 6759 -1236 183 80 0 0 chr1 43120032 43120057 -199544296 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2234 180 81 25 chr1 43120057 43120315 -199544038 + L1MD3 LINE L1 6759 7068 -927 2003 129 3 19 chr1 43120315 43120626 -199543727 + AluSx SINE Alu 1 306 -6 2234 180 81 25 chr1 43120626 43120711 -199543642 + L1MD3 LINE L1 7068 7147 -848 989 157 69 55 chr1 43120711 43120928 -199543425 + AluJo SINE Alu 85 304 -8 1241 165 20 52 chr1 43120962 43121058 -199543295 + AluJo SINE Alu 66 164 -148 2081 124 7 3 chr1 43121058 43121365 -199542988 - AluSc SINE Alu -1 308 1 1241 165 20 52 chr1 43121365 43121517 -199542836 + AluJo SINE Alu 164 306 -6 793 199 24 6 chr1 43121517 43121683 -199542670 + L1MC4a LINE L1 7199 7367 -441 1413 164 30 97 chr1 43121686 43122089 -199542264 - LTR5 LTR ERVK 0 969 594 465 97 0 0 chr1 43122089 43122151 -199542202 + tRNA-Lys-AAG tRNA tRNA 15 76 0 1397 162 40 89 chr1 43122153 43122548 -199541805 - LTR5 LTR ERVK 0 969 594 465 97 0 0 chr1 43122548 43122610 -199541743 + tRNA-Lys-AAG tRNA tRNA 15 76 0 4710 167 28 40 chr1 43122612 43123593 -199540760 - LTR5 LTR ERVK 0 969 1 1504 182 42 88 chr1 43123593 43123711 -199540642 + L1MD3 LINE L1 7541 7663 -332 1874 155 3 16 chr1 43123711 43124021 -199540332 + AluJo SINE Alu 1 306 -6 1504 182 42 88 chr1 43124021 43124216 -199540137 + L1MD3 LINE L1 7663 7827 -168 2310 90 0 0 chr1 43124216 43124517 -199539836 - AluSg1 SINE Alu -4 305 5 1504 182 42 88 chr1 43124517 43124679 -199539674 + L1MD3 LINE L1 7827 7995 0 310 340 39 43 chr1 43124693 43124925 -199539428 + L2 LINE L2 3083 3313 0 245 284 78 17 chr1 43125850 43125966 -199538387 - MIR SINE MIR -121 141 19 2448 71 0 0 chr1 43125985 43126296 -199538057 + AluY SINE Alu 1 311 0 294 203 152 0 chr1 43129541 43129620 -199534733 + MIR SINE MIR 48 138 -70 218 339 52 0 chr1 43130184 43130299 -199534054 + MIR SINE MIR 27 147 -115 257 239 120 11 chr1 43130548 43130640 -199533713 + MLT1F1 LTR MaLR 7 108 -459 1668 266 28 10 chr1 43130664 43131160 -199533193 + L1MC3 LINE L1 7217 7721 -64 802 144 0 0 chr1 43131164 43131282 -199533071 - FRAM SINE Alu -17 159 42 1155 311 140 21 chr1 43131333 43132382 -199531971 - L2 LINE L2 -597 2717 1544 21 36 0 0 chr1 43133403 43133431 -199530922 + GC_rich Low_complexity Low_complexity 1 28 0 1598 164 16 42 chr1 43134990 43135301 -199529052 - AluJb SINE Alu 0 312 10 1690 158 30 30 chr1 43135332 43135629 -199528724 - AluSx SINE Alu -15 297 1 200 275 0 0 chr1 43136110 43136150 -199528203 + (CGTG)n Simple_repeat Simple_repeat 4 43 0 383 267 35 0 chr1 43136868 43136984 -199527369 + MIR3 SINE MIR 58 177 -31 254 322 0 11 chr1 43137776 43137863 -199526490 + (TG)n Simple_repeat Simple_repeat 1 86 0 1601 162 54 17 chr1 43138153 43138449 -199525904 - AluJb SINE Alu -5 307 1 200 286 0 16 chr1 43138707 43138770 -199525583 + MIR SINE MIR 14 75 -187 433 152 283 0 chr1 43141896 43141995 -199522358 + FLAM_C SINE Alu 1 127 -6 285 98 0 0 chr1 43142000 43142041 -199522312 + (CA)n Simple_repeat Simple_repeat 2 42 0 510 273 88 25 chr1 43142487 43142911 -199521442 - L2 LINE L2 -313 3000 2560 301 262 0 12 chr1 43143022 43143106 -199521247 - L2 LINE L2 -983 2331 2249 2200 101 3 0 chr1 43144364 43144662 -199519691 - AluSx SINE Alu -13 299 1 316 211 110 9 chr1 43144887 43144996 -199519357 - MER117 DNA MER1_type -31 166 47 471 308 71 0 chr1 43145733 43145915 -199518438 + MIR3 SINE MIR 1 195 -13 207 342 128 32 chr1 43146674 43146724 -199517629 + MIR SINE MIR 21 65 -197 1732 124 12 81 chr1 43146724 43147046 -199517307 - AluJo SINE Alu -12 300 1 207 342 128 32 chr1 43147046 43147182 -199517171 + MIR SINE MIR 65 225 -37 520 232 113 51 chr1 43147612 43147905 -199516448 - L1ME4a LINE L1 -2 6119 5809 1850 106 42 4 chr1 43148669 43148934 -199515419 + AluSq SINE Alu 31 305 -8 2114 183 49 32 chr1 43150080 43150538 -199513815 + L1MB8 LINE L1 3802 4271 -1875 2398 76 0 0 chr1 43150538 43150840 -199513513 + AluY SINE Alu 1 302 -9 2114 183 49 32 chr1 43150840 43150888 -199513465 + L1MB8 LINE L1 4271 4317 -1829 763 203 0 15 chr1 43150892 43151025 -199513328 - FLAM_C SINE Alu -11 132 2 526 181 20 20 chr1 43151026 43151175 -199513178 - L1M4 LINE L1 -1676 4470 4322 2308 84 0 0 chr1 43151185 43151483 -199512870 + AluY SINE Alu 1 298 -13 363 164 16 0 chr1 43151512 43151573 -199512780 - AluJ/FRAM SINE Alu -13 289 228 918 206 5 25 chr1 43151574 43151773 -199512580 + AluJo SINE Alu 115 309 -3 301 192 39 13 chr1 43151774 43151836 -199512517 + L1 LINE L1 5225 5291 -855 860 156 0 22 chr1 43151836 43151971 -199512382 + FLAM_C SINE Alu 2 133 0 4096 204 57 34 chr1 43151971 43152703 -199511650 + L1MB8 LINE L1 4456 5170 -1008 1815 161 0 10 chr1 43152703 43153007 -199511346 + AluJo SINE Alu 1 301 -11 4096 204 57 34 chr1 43153007 43153025 -199511328 + L1MB8 LINE L1 5170 5186 -992 1661 164 59 0 chr1 43153025 43153311 -199511042 + AluJo SINE Alu 1 303 -9 4096 204 57 34 chr1 43153311 43153585 -199510768 + L1MB8 LINE L1 5186 5452 -726 2342 61 0 3 chr1 43153585 43153878 -199510475 + AluY SINE Alu 6 297 -14 4096 204 57 34 chr1 43153878 43153941 -199510412 + L1MB8 LINE L1 5452 5512 -666 1616 133 103 0 chr1 43153941 43154212 -199510141 + AluSx SINE Alu 1 299 -13 4096 204 57 34 chr1 43154212 43154418 -199509935 + L1MB8 LINE L1 5512 5712 -466 2367 75 13 0 chr1 43154418 43154725 -199509628 + AluY SINE Alu 1 311 0 4096 204 57 34 chr1 43154725 43155103 -199509250 + L1MB8 LINE L1 5712 6178 0 210 227 0 0 chr1 43155230 43155274 -199509079 - L2 LINE L2 -224 3048 3005 1836 155 3 7 chr1 43155279 43155589 -199508764 + AluJb SINE Alu 1 309 -3 1816 150 20 0 chr1 43155722 43156016 -199508337 - AluJb SINE Alu -12 300 1 2170 87 0 7 chr1 43156082 43156369 -199507984 - AluSx SINE Alu -21 291 7 1142 282 152 11 chr1 43156398 43157292 -199507061 - L2 LINE L2 -14 3299 2264 1288 263 163 14 chr1 43157383 43157949 -199506404 + MER20B DNA MER1_type 5 654 -129 1872 150 0 3 chr1 43157954 43158247 -199506106 - AluJb SINE Alu -20 292 1 182 268 124 10 chr1 43158370 43158467 -199505886 - L2 LINE L2 -1135 2179 2072 609 336 73 23 chr1 43158487 43158829 -199505524 - L2 LINE L2 -1779 1535 1177 842 257 12 64 chr1 43159033 43159379 -199504974 + L1MC4 LINE L1 7715 8042 0 1156 115 0 0 chr1 43159976 43160133 -199504220 + AluSx SINE Alu 3 159 -153 781 174 0 23 chr1 43160338 43160470 -199503883 + AluJo/FLAM SINE Alu 1 129 -183 2156 112 0 3 chr1 43160472 43160768 -199503585 + AluSq SINE Alu 1 295 -18 312 267 0 0 chr1 43160777 43160867 -199503486 + L1MC4 LINE L1 6614 6703 -1339 213 39 0 0 chr1 43160867 43160893 -199503460 + (TG)n Simple_repeat Simple_repeat 2 27 0 198 0 0 0 chr1 43160892 43160914 -199503439 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 1994 96 0 0 chr1 43161188 43161448 -199502905 + AluSq SINE Alu 1 260 -53 286 267 133 56 chr1 43161454 43161634 -199502719 + HAL1 LINE L1 2310 2503 -4 782 167 23 15 chr1 43161809 43161941 -199502412 + AluJo/FLAM SINE Alu 1 133 -169 2545 73 0 3 chr1 43161944 43162246 -199502107 + AluY SINE Alu 1 301 -10 1350 157 0 14 chr1 43162250 43162460 -199501893 + AluJb SINE Alu 90 296 -16 1805 219 71 73 chr1 43162468 43163116 -199501237 + L1MC4 LINE L1 7327 7975 -67 2035 169 3 6 chr1 43163116 43163429 -199500924 - AluJo SINE Alu 0 312 1 1805 219 71 73 chr1 43163429 43163496 -199500857 + L1MC4 LINE L1 7975 8041 -1 2322 106 3 0 chr1 43164498 43164799 -199499554 - AluSg SINE Alu -8 302 1 1783 156 13 23 chr1 43164882 43165184 -199499169 + AluJb SINE Alu 1 299 -13 185 306 0 0 chr1 43165197 43165246 -199499107 - L2 LINE L2 -82 3190 3142 867 237 59 14 chr1 43165253 43165472 -199498881 + MIR SINE MIR 10 238 -24 218 311 0 0 chr1 43165439 43165500 -199498853 + L2 LINE L2 3251 3311 -2 * 312 380 13 20 chr1 43165580 43165730 -199498623 - L2 LINE L2 -175 3097 2949 606 357 120 31 chr1 43165793 43166544 -199497809 - L2 LINE L2 -468 2846 2029 2123 149 3 0 chr1 43167451 43167747 -199496606 + AluSx SINE Alu 1 297 -15 2130 165 54 56 chr1 43168596 43169093 -199495260 + MLT1D LTR MaLR 1 496 -9 23 0 0 0 chr1 43169107 43169130 -199495223 + AT_rich Low_complexity Low_complexity 1 23 0 2263 121 0 0 chr1 43169130 43169428 -199494925 + AluSx SINE Alu 1 298 -14 697 167 16 16 chr1 43169429 43169555 -199494798 - AluJo/FLAM SINE Alu -185 127 2 2141 120 0 0 chr1 43169755 43170030 -199494323 + AluSx SINE Alu 1 275 -37 252 86 0 0 chr1 43170035 43170070 -199494283 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 602 201 108 59 chr1 43170116 43170270 -199494083 - MER58C DNA MER1_type -2206 214 46 1614 171 8 4 chr1 43170270 43170533 -199493820 + AluJb SINE Alu 34 297 -15 602 201 108 59 chr1 43170533 43170582 -199493771 - MER58C DNA MER1_type -2374 46 1 2264 117 3 0 chr1 43170673 43170972 -199493381 + AluSx SINE Alu 5 304 -8 1668 156 98 67 chr1 43171549 43171634 -199492719 + MLT1C LTR MaLR 6 87 -380 1893 183 7 3 chr1 43171634 43171940 -199492413 + AluJo SINE Alu 1 307 -5 1668 156 98 67 chr1 43171940 43172302 -199492051 + MLT1C LTR MaLR 87 467 0 2101 149 0 0 chr1 43172621 43172908 -199491445 + AluSx SINE Alu 1 290 -22 186 43 0 0 chr1 43172908 43172931 -199491422 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2057 126 31 3 chr1 43173208 43173502 -199490851 + AluSx SINE Alu 1 302 -10 611 142 22 75 chr1 43173557 43173691 -199490662 + FLAM_C SINE Alu 1 127 -6 2021 122 31 14 chr1 43173695 43173983 -199490370 + AluSg SINE Alu 1 293 -17 2194 101 29 13 chr1 43174286 43174593 -199489760 + AluSx SINE Alu 1 312 0 691 122 22 72 chr1 43174649 43174788 -199489565 + AluJo/FLAM SINE Alu 1 132 -170 2426 92 0 7 chr1 43174791 43175097 -199489256 + AluSg SINE Alu 6 309 -1 185 237 0 0 chr1 43175133 43175171 -199489182 - MIR SINE MIR -120 88 51 2474 57 0 7 chr1 43175420 43175720 -199488633 + AluY SINE Alu 1 298 -13 628 276 89 29 chr1 43175739 43175931 -199488422 + MIR SINE MIR 2 214 -48 2397 70 3 3 chr1 43175931 43176229 -199488124 + AluY SINE Alu 1 298 -13 628 276 89 29 chr1 43176229 43176282 -199488071 + MIR SINE MIR 214 262 0 596 324 64 52 chr1 43176277 43176700 -199487653 - L2 LINE L2 -2 3311 2884 * 1800 155 93 21 chr1 43176700 43177086 -199487267 + MLT2C2 LTR ERVL 1 414 -50 534 310 100 25 chr1 43177107 43177717 -199486636 - L2 LINE L2 -425 2889 2234 5247 143 47 89 chr1 43178146 43179344 -199485009 - pTR5 LTR ERV1 -1 2437 136 2469 67 0 0 chr1 43179777 43180112 -199484241 - AluY SINE Alu 0 311 1 2156 125 0 3 chr1 43180293 43180597 -199483756 + AluSx SINE Alu 1 303 -9 1880 176 13 0 chr1 43180647 43180954 -199483399 - AluJb SINE Alu -1 311 1 4312 44 38 49 chr1 43181096 43181705 -199482648 - LTR66 LTR ERVL -8 602 1 29 28 0 0 chr1 43181823 43181859 -199482494 + AT_rich Low_complexity Low_complexity 1 36 0 814 178 7 0 chr1 43181859 43181994 -199482359 - AluJo SINE Alu -176 136 1 1416 226 62 36 chr1 43182131 43182334 -199482019 + L1ME1 LINE L1 5734 5930 -236 2413 110 0 0 chr1 43182334 43182643 -199481710 + AluSg SINE Alu 1 309 -1 1416 226 62 36 chr1 43182643 43182855 -199481498 + L1ME1 LINE L1 5930 6160 -6 2497 72 0 0 chr1 43183087 43183393 -199480960 - AluY SINE Alu 0 311 6 276 361 58 19 chr1 43183413 43183447 -199480906 - L2 LINE L2 -2167 1147 1116 1161 206 64 138 chr1 43183447 43183870 -199480483 - MLT1E LTR MaLR 0 593 231 2333 95 7 3 chr1 43183870 43184166 -199480187 - AluSc SINE Alu -12 297 1 1161 206 64 138 chr1 43184166 43184382 -199479971 - MLT1E LTR MaLR -362 231 1 276 361 58 19 chr1 43184382 43184707 -199479646 - L2 LINE L2 -2198 1116 774 528 274 187 13 chr1 43184893 43185283 -199479070 + L2 LINE L2 2851 3308 -5 547 292 20 26 chr1 43185467 43185662 -199478691 + MIR SINE MIR 64 257 -5 2399 98 0 3 chr1 43185722 43186027 -199478326 - AluSq SINE Alu -9 304 1 801 128 0 8 chr1 43186045 43186162 -199478191 - FLAM_C SINE Alu -16 117 2 362 284 0 58 chr1 43186163 43186318 -199478035 + MIR SINE MIR 71 216 -46 2276 102 23 3 chr1 43186421 43186726 -199477627 - AluSq SINE Alu 0 313 3 420 296 84 56 chr1 43187660 43187774 -199476579 + MLT1J LTR MaLR 61 170 -298 1678 166 25 47 chr1 43187774 43188093 -199476260 + AluJb SINE Alu 1 312 0 420 296 84 56 chr1 43188093 43188371 -199475982 + MLT1J LTR MaLR 170 458 -10 433 322 17 11 chr1 43188534 43188714 -199475639 + MIR SINE MIR 36 216 -46 236 250 18 0 chr1 43188871 43188927 -199475426 - L2 LINE L2 -16 3297 3241 274 271 51 102 chr1 43189076 43189138 -199475215 + MER5B DNA MER1_type 59 116 -62 2341 97 0 0 chr1 43189138 43189461 -199474892 - AluSg SINE Alu 0 323 1 274 271 51 102 chr1 43189461 43189514 -199474839 + MER5B DNA MER1_type 116 170 -8 2412 87 7 0 chr1 43189563 43189863 -199474490 - AluSx SINE Alu -10 302 1 290 266 79 45 chr1 43190004 43190181 -199474172 - MIR SINE MIR -2 260 78 228 338 0 0 chr1 43190130 43190207 -199474146 + MIR SINE MIR 186 262 0 * 356 295 0 41 chr1 43190195 43190317 -199474036 - MIR SINE MIR -100 162 46 1057 287 109 18 chr1 43190943 43191659 -199472694 - L2 LINE L2 -1 3312 2511 200 59 29 0 chr1 43192012 43192046 -199472307 + (GGA)n Simple_repeat Simple_repeat 3 37 0 383 295 96 0 chr1 43194724 43194890 -199469463 + MIR SINE MIR 14 195 -67 808 257 28 14 chr1 43195138 43195352 -199469001 + MIR SINE MIR 2 218 -44 219 349 28 18 chr1 43195661 43195770 -199468583 + MIR3 SINE MIR 7 116 -92 2425 94 3 0 chr1 43195779 43196087 -199468266 - AluSx SINE Alu -3 309 1 2562 70 0 16 chr1 43196094 43196410 -199467943 - AluY SINE Alu 0 311 1 606 188 121 7 chr1 43196443 43196592 -199467761 - MIR SINE MIR -48 214 49 248 282 12 24 chr1 43196642 43196727 -199467626 + MIR SINE MIR 137 220 -42 202 350 24 24 chr1 43196852 43196975 -199467378 - MER5A DNA MER1_type 0 189 67 * 362 335 66 0 chr1 43196867 43197019 -199467334 + MER5A DNA MER1_type 26 187 -2 244 235 294 0 chr1 43197607 43197709 -199466644 + L2 LINE L2 3139 3270 -2 193 272 97 9 chr1 43197977 43198091 -199466262 + L2 LINE L2 1932 2055 -1259 598 247 18 42 chr1 43198671 43198837 -199465516 + MIR SINE MIR 57 218 -44 278 275 0 0 chr1 43198895 43198964 -199465389 - MER117 DNA MER1_type -125 72 4 522 247 67 15 chr1 43199120 43199321 -199465032 - MIR3 SINE MIR -32 230 28 414 209 35 35 chr1 43199578 43199693 -199464660 - MIR SINE MIR -62 146 32 697 284 46 0 chr1 43199841 43200059 -199464294 - MIR SINE MIR -1 261 34 31 68 0 0 chr1 43200527 43200586 -199463767 + GC_rich Low_complexity Low_complexity 1 59 0 31 26 0 0 chr1 43200647 43200685 -199463668 + GC_rich Low_complexity Low_complexity 1 38 0 649 302 126 17 chr1 43201235 43201593 -199462760 + L2 LINE L2 2361 2757 -557 2272 107 3 10 chr1 43201595 43201903 -199462450 - AluSx SINE Alu -6 306 1 492 320 87 18 chr1 43202109 43202384 -199461969 + L2 LINE L2 2995 3288 -25 291 306 19 0 chr1 43203132 43203240 -199461113 - MIR SINE MIR -118 144 35 305 239 167 7 chr1 43203621 43203759 -199460594 - MIR3 SINE MIR -7 201 42 2494 88 0 7 chr1 43203767 43204074 -199460279 - AluSc SINE Alu -4 305 1 419 266 123 39 chr1 43204400 43204603 -199459750 - MIR SINE MIR -9 253 34 213 267 0 0 chr1 43204636 43204681 -199459672 + L2 LINE L2 3214 3258 -14 923 192 11 28 chr1 43205806 43205983 -199458370 + FRAM SINE Alu 1 166 -10 463 233 8 42 chr1 43206074 43206194 -199458159 - MIR SINE MIR -62 146 31 497 259 19 38 chr1 43206232 43206390 -199457963 - MIR SINE MIR -30 232 78 38 22 0 0 chr1 43207192 43207237 -199457116 + GC_rich Low_complexity Low_complexity 1 45 0 765 278 115 10 chr1 43208635 43208930 -199455423 - L2 LINE L2 -835 2479 2154 812 246 40 9 chr1 43208939 43209163 -199455190 - MIR SINE MIR -3 259 29 1589 176 3 48 chr1 43209216 43209381 -199454972 - AluJo SINE Alu -31 281 133 2587 62 0 3 chr1 43209381 43209687 -199454666 + AluY SINE Alu 2 306 -5 1589 176 3 48 chr1 43209687 43209811 -199454542 - AluJo SINE Alu -179 133 5 1191 195 58 19 chr1 43209861 43210177 -199454176 + MER33 DNA MER1_type 1 323 -1 1150 177 23 9 chr1 43210186 43210401 -199453952 - MER20 DNA MER1_type 0 219 2 425 206 19 9 chr1 43210540 43210647 -199453706 + L2 LINE L2 2692 2799 -515 320 182 0 0 chr1 43210664 43210719 -199453634 + MER94 DNA DNA 28 82 -52 684 245 68 19 chr1 43210875 43211140 -199453213 - L2 LINE L2 -130 3183 2906 2347 89 69 8 chr1 43211151 43211512 -199452841 + MSTA LTR MaLR 1 383 -45 585 202 9 0 chr1 43211512 43211621 -199452732 - MIR SINE MIR -140 122 13 960 181 0 0 chr1 43212215 43212381 -199451972 + FRAM SINE Alu 1 166 0 317 346 39 0 chr1 43212901 43213028 -199451325 + L2 LINE L2 3134 3265 -7 263 320 0 0 chr1 43213236 43213314 -199451039 - MIR SINE MIR -76 132 55 482 256 68 30 chr1 43213315 43213448 -199450905 + MIR SINE MIR 105 242 -20 417 300 59 6 chr1 43213440 43213610 -199450743 + L2 LINE L2 2122 2300 -1014 * 361 197 0 0 chr1 43214682 43214748 -199449605 + MIR SINE MIR 107 172 -90 257 291 136 36 chr1 43214811 43215031 -199449322 + L2 LINE L2 2841 3082 -190 188 279 63 25 chr1 43215402 43215481 -199448872 - MIR SINE MIR -97 111 30 1175 292 69 12 chr1 43215791 43216199 -199448154 - LTR16B LTR ERVL 0 464 34 535 124 0 65 chr1 43216394 43216463 -199447890 + L1PA10 LINE L1 6036 6108 -60 2328 92 3 16 chr1 43216463 43216792 -199447561 + AluSx SINE Alu 1 312 0 535 124 0 65 chr1 43216792 43216826 -199447527 + L1PA10 LINE L1 6108 6146 -22 225 0 0 0 chr1 43216826 43216851 -199447502 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 535 124 0 65 chr1 43216851 43216869 -199447484 + L1PA10 LINE L1 6146 6164 -4 632 154 36 0 chr1 43216876 43216986 -199447367 + MLT1A1 LTR MaLR 1 114 -251 1254 58 0 32 chr1 43216993 43217147 -199447206 - AluSc SINE Alu -160 149 1 2283 194 75 2 chr1 43217891 43218330 -199446023 + MLT1F LTR MaLR 1 471 -71 2572 77 0 3 chr1 43219256 43219567 -199444786 + AluSx SINE Alu 1 310 -2 660 199 196 72 chr1 43219714 43220005 -199444348 + MER102a DNA MER1_type 1 327 -3 398 246 119 8 chr1 43220443 43220569 -199443784 + MER91C DNA MER1_type 1 140 0 581 259 0 7 chr1 43221422 43221557 -199442796 + MER117 DNA MER1_type 2 135 -62 1063 152 54 54 chr1 43222282 43222431 -199441922 - MER58A DNA MER1_type -2196 224 73 2509 85 0 0 chr1 43222431 43222736 -199441617 - AluSc SINE Alu -4 305 1 1063 152 54 54 chr1 43222736 43222810 -199441543 - MER58A DNA MER1_type -2346 74 1 521 263 0 9 chr1 43223072 43223186 -199441167 + MIR SINE MIR 2 114 -148 221 206 48 63 chr1 43225236 43225299 -199439054 - L3 LINE CR1 -103 1474 1413 512 320 2 5 chr1 43225860 43226086 -199438267 + MER91A DNA MER1_type 2 190 0 278 292 62 0 chr1 43226167 43226263 -199438090 - MIR SINE MIR -73 135 34 256 196 18 18 chr1 43231195 43231251 -199433102 + MLT1K LTR MaLR 187 242 -346 2063 65 33 7 chr1 43231631 43231906 -199432447 - AluY SINE Alu -2 309 28 228 227 36 27 chr1 43232142 43232252 -199432101 + (CCCCG)n Simple_repeat Simple_repeat 2 112 0 355 300 12 0 chr1 43233045 43233145 -199431208 + MIR SINE MIR 4 105 -103 2277 119 3 3 chr1 43234833 43235145 -199429208 - AluSq SINE Alu -1 312 1 1510 169 60 15 chr1 43236805 43237071 -199427282 - AluJo SINE Alu -30 282 5 183 310 0 52 chr1 43237158 43237216 -199427137 - L2 LINE L2 -26 3246 3192 286 241 22 24 chr1 43238264 43238383 -199425970 - L1ME4a LINE L1 -41 6035 1190 772 152 25 71 chr1 43240276 43240400 -199423953 - MER5A DNA MER1_type 0 189 76 2626 59 7 0 chr1 43240400 43240706 -199423647 - AluY SINE Alu -3 308 1 772 152 25 71 chr1 43240706 43240778 -199423575 - MER5A DNA MER1_type -113 76 2 275 262 119 0 chr1 43242585 43242669 -199421684 - MER5B DNA MER1_type -23 155 62 2352 90 0 13 chr1 43242756 43243134 -199421219 - AluSg SINE Alu 0 310 1 749 197 0 0 chr1 43243135 43243262 -199421091 - AluJo/FLAM SINE Alu -175 127 1 484 154 118 27 chr1 43247358 43247468 -199416885 + MER20 DNA MER1_type 99 218 -1 2551 47 3 7 chr1 43248591 43248892 -199415461 + AluY SINE Alu 1 300 -11 2749 45 0 0 chr1 43250267 43250578 -199413775 + AluY SINE Alu 1 311 0 2235 42 8 0 chr1 43250667 43250927 -199413426 + AluY SINE Alu 1 262 -49 484 154 118 27 chr1 43254131 43254241 -199410112 + MER20 DNA MER1_type 99 218 -1 2553 64 0 6 chr1 43255364 43255677 -199408676 + AluY SINE Alu 1 311 0 275 262 119 0 chr1 43255832 43255916 -199408437 + MER5B DNA MER1_type 62 155 -23 749 157 25 71 chr1 43257723 43257795 -199406558 + MER5A DNA MER1_type 2 76 -113 2626 59 7 0 chr1 43257795 43258101 -199406252 + AluY SINE Alu 1 308 -3 749 157 25 71 chr1 43258101 43258225 -199406128 + MER5A DNA MER1_type 76 189 0 286 241 22 24 chr1 43260118 43260237 -199404116 + L1ME4a LINE L1 1190 6035 -41 183 310 0 52 chr1 43261285 43261343 -199403010 + L2 LINE L2 3192 3246 -26 1510 169 60 15 chr1 43261430 43261696 -199402657 + AluJo SINE Alu 5 282 -30 741 215 76 0 chr1 43463033 43463205 -199201148 + AluJb SINE Alu 120 304 -8 658 178 29 8 chr1 43463230 43463471 -199200882 + GA-rich Low_complexity Low_complexity 1 246 0 1057 138 23 6 chr1 43463523 43463697 -199200656 - AluSg/x SINE Alu -20 290 114 1542 147 32 70 chr1 43464028 43464340 -199200013 + AluJo SINE Alu 1 300 -12 2236 93 3 0 chr1 43464481 43464783 -199199570 - AluSp SINE Alu -10 303 1 196 306 179 22 chr1 43465022 43465156 -199199197 - MIR3 SINE MIR -47 161 7 1911 53 0 8 chr1 43465284 43465527 -199198826 - AluY SINE Alu -13 298 58 1051 195 46 28 chr1 43465531 43465699 -199198654 + L1M4 LINE L1 5114 5290 -856 2178 106 0 3 chr1 43465699 43466001 -199198352 + AluSq SINE Alu 1 301 -12 1051 195 46 28 chr1 43466001 43466114 -199198239 + L1M4 LINE L1 5290 5400 -746 2229 75 27 0 chr1 43466116 43466408 -199197945 + AluSx SINE Alu 1 300 -12 372 325 80 17 chr1 43466691 43466928 -199197425 + L2 LINE L2 872 1123 -2191 1481 150 30 11 chr1 43466930 43467196 -199197157 + AluJo SINE Alu 4 274 -38 2318 82 0 0 chr1 43467198 43467504 -199196849 - AluY SINE Alu -5 306 1 1781 138 0 43 chr1 43467992 43468297 -199196056 - AluSx SINE Alu -20 292 1 269 232 43 0 chr1 43468303 43468372 -199195981 - L2 LINE L2 -234 3079 3008 931 178 6 0 chr1 43468377 43468534 -199195819 - AluJo SINE Alu -154 158 1 927 281 10 0 chr1 43468775 43468974 -199195379 + LTR33 LTR ERVL 15 215 -306 400 277 9 45 chr1 43469022 43469134 -199195219 + LTR33 LTR ERVL 312 419 -102 515 229 45 65 chr1 43469134 43469360 -199194993 - L1ME3A LINE L1 -193 5969 5732 477 283 51 0 chr1 43469369 43469507 -199194846 - L1ME3A LINE L1 -499 5671 5527 182 37 37 0 chr1 43469585 43469612 -199194741 + (TTTCC)n Simple_repeat Simple_repeat 4 31 0 959 188 24 0 chr1 43469618 43469788 -199194565 - AluJb SINE Alu -10 302 129 713 203 25 97 chr1 43469794 43469929 -199194424 - L1M4 LINE L1 -3579 2567 2424 539 164 60 67 chr1 43469929 43470063 -199194290 - FLAM_A SINE Alu 0 133 1 713 203 25 97 chr1 43470063 43470117 -199194236 - L1M4 LINE L1 -3722 2424 2368 2128 89 0 0 chr1 43470117 43470425 -199193928 - AluSg SINE Alu 0 309 2 2343 55 0 19 chr1 43470433 43470744 -199193609 - AluY SINE Alu -6 305 1 713 203 25 97 chr1 43470744 43470863 -199193490 - L1M4 LINE L1 -3785 2361 2271 723 210 62 83 chr1 43470871 43471209 -199193144 - L1MC4 LINE L1 0 8042 7712 1908 141 0 7 chr1 43471209 43471500 -199192853 + AluJb SINE Alu 1 289 -23 214 0 0 98 chr1 43471509 43471560 -199192793 + (TCTCCC)n Simple_repeat Simple_repeat 5 50 0 184 53 53 26 chr1 43471722 43471760 -199192593 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 1423 262 44 25 chr1 43471900 43472535 -199191818 + MER20B DNA MER1_type 1 677 -106 1533 114 0 0 chr1 43472535 43472745 -199191608 + AluSx SINE Alu 1 210 -102 927 286 38 26 chr1 43472851 43473320 -199191033 - L1 LINE L1 -2919 3227 2753 735 311 6 6 chr1 43473828 43474159 -199190194 - L1P LINE L1 -3378 2768 2438 339 306 50 33 chr1 43475947 43476127 -199188226 + L1 LINE L1 2864 3046 -3100 33 25 0 0 chr1 43476291 43476331 -199188022 + AT_rich Low_complexity Low_complexity 1 40 0 455 290 70 3 chr1 43476355 43476641 -199187712 + L1 LINE L1 3040 3344 -2802 32 0 0 0 chr1 43476862 43476894 -199187459 + AT_rich Low_complexity Low_complexity 1 32 0 32 0 0 0 chr1 43479052 43479084 -199185269 + AT_rich Low_complexity Low_complexity 1 32 0 940 251 34 22 chr1 43479351 43479674 -199184679 + L1MA9 LINE L1 5605 5931 -381 26 0 0 0 chr1 43480332 43480358 -199183995 + AT_rich Low_complexity Low_complexity 1 26 0 314 272 95 16 chr1 43482344 43482579 -199181774 + HERVK14 LTR ERVK 2140 2193 -3723 701 278 35 38 chr1 43482734 43483059 -199181294 + HERVK14 LTR ERVK 2358 2935 -3010 374 274 101 84 chr1 43483160 43483456 -199180897 + L1MA1 LINE L1 5721 6021 -145 28 29 0 0 chr1 43483520 43483555 -199180798 + AT_rich Low_complexity Low_complexity 1 35 0 1254 267 15 7 chr1 43485079 43485483 -199178870 - L1 LINE L1 -2196 3950 3544 534 310 34 81 chr1 43487477 43488042 -199176311 + L1 LINE L1 1672 2209 -4640 362 234 106 8 chr1 43488366 43488515 -199175838 - AluSq/x SINE Alu -198 105 4 198 0 0 0 chr1 43488747 43488769 -199175584 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1614 236 0 0 chr1 43489040 43489413 -199174940 + L1 LINE L1 4187 4559 -2289 231 186 0 0 chr1 43489553 43489596 -199174757 + L2 LINE L2 1730 1772 -1542 1832 214 103 66 chr1 43489618 43489665 -199174688 - L2 LINE L2 -1465 1849 1805 1881 155 7 0 chr1 43489665 43489975 -199174378 + AluJb SINE Alu 1 312 0 1832 214 103 66 chr1 43489975 43490202 -199174151 - L2 LINE L2 -1509 1805 1588 2121 99 3 0 chr1 43490202 43490531 -199173822 + AluSg SINE Alu 1 330 0 1832 214 103 66 chr1 43490531 43490905 -199173448 - L2 LINE L2 -1726 1588 1175 426 151 0 0 chr1 43493559 43493632 -199170721 - FLAM_C SINE Alu -1 142 70 274 296 237 18 chr1 43493724 43493893 -199170460 + L3 LINE CR1 1347 1552 -25 1664 163 24 0 chr1 43494111 43494482 -199169871 + AluJo SINE Alu 11 388 0 1795 89 29 4 chr1 43494506 43494752 -199169601 + AluSx SINE Alu 1 252 -60 306 0 0 0 chr1 43496651 43496685 -199167668 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 230 167 0 0 chr1 43496702 43496738 -199167615 + MLT2A1 LTR ERVL 403 438 -6 311 200 37 82 chr1 43496875 43497010 -199167343 + L2 LINE L2 3138 3266 -6 663 186 0 9 chr1 43497728 43497841 -199166512 - FLAM_A SINE Alu -23 119 8 388 93 0 0 chr1 43497841 43497895 -199166458 - L1MB3 LINE L1 -41 6142 6089 246 271 0 0 chr1 43497952 43498011 -199166342 - LTR24B LTR ERV1 -248 328 270 2018 118 3 3 chr1 43498011 43498308 -199166045 - AluSx SINE Alu -15 297 1 647 178 56 0 chr1 43498308 43498488 -199165865 - L1MB3 LINE L1 -78 6105 5798 303 321 46 0 chr1 43498512 43498621 -199165732 + L2 LINE L2 3175 3288 -25 312 240 54 70 chr1 43498626 43498755 -199165598 - MIR SINE MIR -128 134 8 391 167 35 11 chr1 43498907 43499081 -199165272 + (TG)n Simple_repeat Simple_repeat 1 178 0 23 0 0 0 chr1 43500795 43500818 -199163535 + AT_rich Low_complexity Low_complexity 1 23 0 863 304 13 13 chr1 43502489 43502877 -199161476 - L1 LINE L1 -744 5402 5015 327 25 0 0 chr1 43502911 43502951 -199161402 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1718 271 14 8 chr1 43503621 43504111 -199160242 - L1MA2 LINE L1 -374 5930 5438 2216 256 13 7 chr1 43507057 43507669 -199156684 - L1MA2 LINE L1 -374 5930 5315 541 237 8 8 chr1 43508166 43508297 -199156056 + L1P2 LINE L1 5449 5579 -576 21 0 0 0 chr1 43510165 43510186 -199154167 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 43510715 43510740 -199153613 + GC_rich Low_complexity Low_complexity 1 25 0 2231 109 0 3 chr1 43510944 43511255 -199153098 + AluSq SINE Alu 1 310 -3 478 226 94 19 chr1 43512837 43512996 -199151357 - FRAM SINE Alu -6 170 1 2416 247 25 21 chr1 43517634 43518533 -199145820 - L1MA9 LINE L1 -381 5931 5030 7473 278 10 7 chr1 43518810 43521338 -199143015 + L1M1 LINE L1 3520 6052 -1513 339 25 0 0 chr1 43523876 43523916 -199140437 + (CA)n Simple_repeat Simple_repeat 1 40 0 371 187 67 0 chr1 43524405 43524480 -199139873 + Tigger7 DNA MER2_type 28 107 -626 249 174 105 105 chr1 43524687 43524773 -199139580 + Tigger7 DNA MER2_type 420 505 -228 287 299 28 0 chr1 43525059 43525166 -199139187 + L1MEc LINE L1 1564 1673 -4723 189 0 0 0 chr1 43526034 43526055 -199138298 + (CCCCCT)n Simple_repeat Simple_repeat 2 22 0 425 237 70 9 chr1 43526312 43526426 -199137927 + FLAM_C SINE Alu 11 131 -12 2107 105 3 3 chr1 43526657 43526951 -199137402 + AluSx SINE Alu 1 294 -18 342 0 0 0 chr1 43527290 43527328 -199137025 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 0 0 0 chr1 43527327 43527349 -199137004 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 280 330 10 0 chr1 43527635 43527732 -199136621 + MIR SINE MIR 37 134 -128 2158 105 0 10 chr1 43527787 43528100 -199136253 + AluSg SINE Alu 1 310 0 293 240 27 0 chr1 43528570 43528645 -199135708 - MER91A DNA MER1_type 0 196 120 1843 282 12 11 chr1 43529550 43530496 -199133857 + L1M1 LINE L1 6128 7075 -644 575 288 72 51 chr1 43530499 43531136 -199133217 - L1PBa LINE L1 -4322 2061 1292 3082 145 54 18 chr1 43532264 43532767 -199131586 - MER21-int LTR ERV1 -1313 2878 2358 1605 185 0 3 chr1 43532769 43533055 -199131298 + AluJo SINE Alu 1 285 -27 1861 139 13 3 chr1 43533071 43533372 -199130981 + AluSx SINE Alu 3 306 -6 1603 130 13 4 chr1 43533426 43533664 -199130689 - MER21-int LTR ERV1 -1821 2370 2131 731 162 0 22 chr1 43534000 43534136 -199130217 - FLAM_C SINE Alu 0 133 1 27 0 0 0 chr1 43534336 43534363 -199129990 + GC_rich Low_complexity Low_complexity 1 27 0 2289 80 3 0 chr1 43534363 43534662 -199129691 - AluY SINE Alu -11 300 1 745 144 17 0 chr1 43534706 43534824 -199129529 - FLAM_C SINE Alu -13 120 1 801 288 82 20 chr1 43535104 43535473 -199128880 + L2 LINE L2 2767 3167 -146 23 33 0 0 chr1 43537374 43537404 -199126949 + AT_rich Low_complexity Low_complexity 1 30 0 226 250 83 0 chr1 43537423 43537483 -199126870 - tRNA-Ala-GCG tRNA tRNA -9 66 2 225 304 27 9 chr1 43537638 43537750 -199126603 - HAL1 LINE L1 -854 1653 1540 291 258 57 32 chr1 43537753 43537877 -199126476 - HAL1 LINE L1 -1161 1346 1220 416 283 9 0 chr1 43537912 43538018 -199126335 - FLAM_A SINE Alu -22 120 14 445 281 0 47 chr1 43540769 43540897 -199123456 - MIR SINE MIR -114 148 27 426 151 0 0 chr1 43540904 43540977 -199123376 - FLAM_C SINE Alu -1 142 70 207 302 105 0 chr1 43541074 43541160 -199123193 - MIR SINE MIR -58 150 56 1352 101 56 0 chr1 43542530 43542728 -199121625 + AluSp SINE Alu 86 294 -19 711 295 35 60 chr1 43542729 43543193 -199121160 - L2 LINE L2 -343 2971 2520 2271 110 0 0 chr1 43543232 43543541 -199120812 - AluSc SINE Alu 0 309 1 647 168 18 0 chr1 43543545 43543658 -199120695 - AluJ SINE Alu -6 306 192 842 156 0 0 chr1 43543658 43543799 -199120554 - AluJ SINE Alu -170 142 2 2221 93 3 7 chr1 43543993 43544295 -199120058 - AluSp SINE Alu -12 301 1 24 0 0 0 chr1 43544399 43544423 -199119930 + AT_rich Low_complexity Low_complexity 1 24 0 731 185 23 8 chr1 43544424 43544554 -199119799 - AluJb SINE Alu -179 133 2 302 340 0 0 chr1 43544557 43544710 -199119643 + L1 LINE L1 4192 4344 -1802 21 0 0 0 chr1 43544760 43544781 -199119572 + AT_rich Low_complexity Low_complexity 1 21 0 3520 98 6 10 chr1 43544786 43545276 -199119077 - LTR10D LTR ERV1 0 513 26 1029 271 14 34 chr1 43545376 43545668 -199118685 + L2 LINE L2 2416 2701 -613 2064 96 0 13 chr1 43545693 43545994 -199118359 + AluSx SINE Alu 1 297 -15 790 132 0 9 chr1 43545994 43546108 -199118245 - MLT1B LTR MaLR -32 358 246 510 171 0 0 chr1 43546108 43546190 -199118163 - AluS SINE Alu -225 87 6 1013 141 22 43 chr1 43546192 43546377 -199117976 - MLT1B LTR MaLR -208 182 2 3551 91 11 0 chr1 43546402 43546873 -199117480 - PABL_B LTR ERV1 0 667 192 2459 55 7 7 chr1 43546873 43547182 -199117171 + AluY SINE Alu 1 309 -2 6278 184 19 28 chr1 43547182 43547485 -199116868 + MER21-int LTR ERV1 1228 1532 -2659 1769 93 100 4 chr1 43547485 43547754 -199116599 + AluSx SINE Alu 1 295 -17 6278 184 19 28 chr1 43547754 43547766 -199116587 + MER21-int LTR ERV1 1532 1543 -2648 1703 172 0 13 chr1 43547766 43548069 -199116284 + AluJo SINE Alu 1 299 -13 6278 184 19 28 chr1 43548069 43548905 -199115448 + MER21-int LTR ERV1 1543 2370 -1821 1391 102 0 53 chr1 43548959 43549185 -199115168 - AluSg/x SINE Alu -6 304 91 1055 271 4 8 chr1 43549416 43549667 -199114686 - MIR SINE MIR -1 261 12 2323 90 0 0 chr1 43549979 43550280 -199114073 - AluSx SINE Alu -11 301 1 1681 174 0 16 chr1 43550408 43550713 -199113640 - AluJo SINE Alu -12 300 1 2211 117 0 0 chr1 43550722 43551030 -199113323 - AluSx SINE Alu -4 308 1 2049 127 0 13 chr1 43551035 43551343 -199113010 - AluSq SINE Alu -9 304 1 193 174 22 43 chr1 43551836 43551882 -199112471 - L2 LINE L2 -82 3190 3146 1747 157 7 7 chr1 43551908 43552207 -199112146 + AluJb SINE Alu 1 299 -13 2184 119 0 0 chr1 43552221 43552531 -199111822 + AluSx SINE Alu 1 310 -2 290 284 63 21 chr1 43552665 43552760 -199111593 - MLT1J LTR MaLR -91 420 322 300 237 107 46 chr1 43553464 43553595 -199110758 - L2 LINE L2 -1 3271 3133 1956 157 89 197 chr1 43553597 43553730 -199110623 + MER82 DNA MER2_type 1 147 -506 429 71 0 0 chr1 43553730 43553786 -199110567 - AluSx SINE Alu -15 296 241 4452 114 8 22 chr1 43553787 43554409 -199109944 - LTR9B LTR ERV1 0 644 30 2226 81 13 3 chr1 43554409 43554707 -199109646 - AluSp SINE Alu -12 301 1 4452 114 8 22 chr1 43554707 43554733 -199109620 - LTR9B LTR ERV1 -614 30 5 1558 154 0 4 chr1 43554735 43554982 -199109371 - AluSx SINE Alu -66 246 1 1956 157 89 197 chr1 43554982 43555157 -199109196 + MER82 DNA MER2_type 148 340 -313 1165 206 141 28 chr1 43555157 43555512 -199108841 - MSTD LTR MaLR 0 396 2 1956 157 89 197 chr1 43555512 43555739 -199108614 + MER82 DNA MER2_type 340 590 -63 1584 97 5 0 chr1 43555739 43555988 -199108365 + L1PB1 LINE L1 5928 6177 0 2206 110 0 0 chr1 43555993 43556293 -199108060 + AluSx SINE Alu 1 300 -12 1956 157 89 197 chr1 43556293 43556420 -199107933 + MER82 DNA MER2_type 594 653 0 9973 280 12 11 chr1 43557040 43561814 -199102539 + L1MA9 LINE L1 1788 6633 -381 481 274 173 5 chr1 43562358 43562555 -199101798 - MIR SINE MIR 0 262 33 188 247 0 96 chr1 43562704 43562777 -199101576 - MIR3 SINE MIR -53 155 90 2902 165 32 8 chr1 43563942 43564469 -199099884 - MER50 LTR ERV1 -193 541 2 545 144 126 18 chr1 43564642 43564753 -199099600 + FLAM_C SINE Alu 14 136 -7 183 235 0 78 chr1 43564749 43564800 -199099553 + MIR SINE MIR 204 250 -12 * 2704 135 93 36 chr1 43564863 43565367 -199098986 - MER21A LTR ERV1 0 931 399 932 113 44 25 chr1 43565374 43565534 -199098819 - MER21A LTR ERV1 -768 163 1 3773 133 63 65 chr1 43565646 43565750 -199098603 - MER21A-int LTR ERV1 -52 4139 4036 658 178 23 0 chr1 43565750 43565879 -199098474 - FLAM_C SINE Alu -1 132 1 3773 133 63 65 chr1 43565879 43566270 -199098083 - MER21A-int LTR ERV1 -155 4036 3646 2335 89 7 7 chr1 43566270 43566572 -199097781 - AluSq SINE Alu -11 302 1 3773 133 63 65 chr1 43566572 43567086 -199097267 - MER21A-int LTR ERV1 -545 3646 3072 22 0 0 0 chr1 43567087 43567109 -199097244 + AT_rich Low_complexity Low_complexity 1 22 0 740 75 37 0 chr1 43567116 43567223 -199097130 - HY1 scRNA scRNA -1 111 1 448 250 19 9 chr1 43567227 43567319 -199097034 - MER21A-int LTR ERV1 -1109 3082 2987 2172 123 3 0 chr1 43567319 43567611 -199096742 - AluSx SINE Alu -18 294 2 448 250 19 9 chr1 43567611 43567626 -199096727 - MER21A-int LTR ERV1 -1204 2987 2974 1240 277 6 119 chr1 43567627 43567955 -199096398 - AluSx SINE Alu -11 291 1 10316 32 12 155 chr1 43568278 43569895 -199094458 + SVA Other Other 1 1386 0 2326 108 0 0 chr1 43569916 43570211 -199094142 + AluSx SINE Alu 1 295 -17 577 181 0 47 chr1 43570420 43570440 -199093913 - MER69A DNA AcHobo -2404 122 103 2253 105 7 3 chr1 43570440 43570745 -199093608 + AluSq SINE Alu 3 308 -5 577 181 0 47 chr1 43570745 43570851 -199093502 - MER69A DNA AcHobo -2423 103 2 25 0 0 0 chr1 43571235 43571260 -199093093 + AT_rich Low_complexity Low_complexity 1 25 0 1522 129 5 0 chr1 43571356 43571566 -199092787 - AluSg/x SINE Alu -17 295 85 464 285 22 0 chr1 43571601 43571738 -199092615 - L2 LINE L2 -590 2724 2585 186 336 172 15 chr1 43571898 43572032 -199092321 + MIR3 SINE MIR 7 161 -47 2458 66 3 0 chr1 43572294 43572582 -199091771 + AluSp SINE Alu 22 310 -3 180 0 0 0 chr1 43574362 43574382 -199089971 + (CAGCC)n Simple_repeat Simple_repeat 4 23 0 228 320 31 21 chr1 43575081 43575178 -199089175 + MIR3 SINE MIR 71 168 -40 761 181 8 0 chr1 43575241 43575368 -199088985 - FLAM_A SINE Alu -5 128 1 1748 154 7 11 chr1 43575438 43575717 -199088636 - AluJo SINE Alu -15 297 20 2533 83 0 6 chr1 43575741 43576054 -199088299 - AluSp SINE Alu 0 313 3 280 293 26 43 chr1 43576188 43576304 -199088049 + L2 LINE L2 2672 2785 -529 236 200 106 0 chr1 43576406 43576491 -199087862 + L2 LINE L2 2943 3036 -236 578 345 17 0 chr1 43576754 43576928 -199087425 + MER91A DNA MER1_type 2 178 -18 349 196 185 0 chr1 43577616 43577708 -199086645 - L2 LINE L2 -5 3308 3200 * 400 325 78 5 chr1 43577706 43577897 -199086456 - MIR SINE MIR -43 219 15 1251 165 98 13 chr1 43578783 43579019 -199085334 - AluJb SINE Alu -56 256 1 210 345 60 9 chr1 43579040 43579156 -199085197 - MIR SINE MIR -63 145 24 400 264 52 26 chr1 43579459 43579614 -199084739 + MER63A DNA MER1_type 52 210 0 249 301 54 0 chr1 43579639 43579732 -199084621 - MIR3 SINE MIR -7 201 104 707 246 42 51 chr1 43579846 43580082 -199084271 - MIR SINE MIR -17 245 12 23 0 0 0 chr1 43580306 43580329 -199084024 + AT_rich Low_complexity Low_complexity 1 23 0 2376 83 6 13 chr1 43580335 43580649 -199083704 + AluSx SINE Alu 1 312 0 1223 126 0 6 chr1 43580651 43580826 -199083527 + AluSg/x SINE Alu 130 303 -9 1723 175 10 3 chr1 43581023 43581315 -199083038 + AluJo SINE Alu 3 296 -16 2006 116 32 3 chr1 43581789 43582095 -199082258 - AluSq SINE Alu 0 313 1 395 271 220 19 chr1 43582250 43582464 -199081889 - L2 LINE L2 -5 3308 3052 2285 95 3 3 chr1 43582486 43582792 -199081561 + AluSx SINE Alu 1 306 -6 569 361 19 5 chr1 43583258 43583463 -199080890 - MIR SINE MIR -6 256 49 367 337 57 2 chr1 43583602 43583776 -199080577 + MIR SINE MIR 30 217 -45 500 309 73 0 chr1 43584277 43584455 -199079898 + MIR SINE MIR 54 244 -18 722 109 0 0 chr1 43584778 43584888 -199079465 + HY1 scRNA scRNA 2 111 -1 2411 90 3 31 chr1 43585199 43585521 -199078832 - AluSq SINE Alu 0 313 1 2424 103 0 0 chr1 43585628 43585938 -199078415 - AluSg SINE Alu 0 310 1 488 82 59 0 chr1 43586163 43586248 -199078105 - AluJ/FRAM SINE Alu -1 311 222 1992 116 0 44 chr1 43586255 43586578 -199077775 - AluSc SINE Alu 0 310 1 230 290 97 11 chr1 43586579 43586672 -199077681 + MIR SINE MIR 34 134 -128 597 116 9 18 chr1 43586672 43586784 -199077569 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 2252 126 0 0 chr1 43586789 43587091 -199077262 - AluJb SINE Alu -9 303 2 2000 161 3 0 chr1 43587182 43587493 -199076860 + AluJo SINE Alu 1 312 0 1251 170 14 0 chr1 43587977 43588189 -199076164 + AluJb SINE Alu 97 311 -1 472 205 151 42 chr1 43588390 43588556 -199075797 - MIR SINE MIR -35 227 44 2239 123 0 16 chr1 43588557 43588874 -199075479 + AluJo SINE Alu 1 312 0 205 119 24 24 chr1 43588911 43588953 -199075400 - MIR SINE MIR -208 54 13 208 241 56 0 chr1 43589777 43589831 -199074522 + MIR SINE MIR 114 170 -92 1998 72 0 0 chr1 43591163 43591400 -199072953 - AluY SINE Alu -3 308 72 354 287 132 17 chr1 43593622 43593796 -199070557 - MIR SINE MIR -64 198 5 307 342 102 5 chr1 43594354 43594550 -199069803 + L2 LINE L2 3046 3260 -12 402 256 31 50 chr1 43594611 43594691 -199069662 + MIR SINE MIR 70 147 -115 2304 97 0 3 chr1 43594691 43594990 -199069363 + AluSg SINE Alu 1 298 -12 402 256 31 50 chr1 43594990 43595069 -199069284 + MIR SINE MIR 147 226 -36 660 326 133 9 chr1 43595124 43595455 -199068898 - L3 LINE CR1 -498 1079 708 1102 151 0 50 chr1 43595762 43595878 -199068475 - AluJo SINE Alu -2 310 207 1998 132 10 75 chr1 43595878 43596126 -199068227 + THE1C LTR MaLR 1 215 -160 2199 123 10 0 chr1 43596126 43596428 -199067925 + AluSx SINE Alu 1 305 -7 1998 132 10 75 chr1 43596428 43596580 -199067773 + THE1C LTR MaLR 215 375 0 1102 151 0 50 chr1 43596580 43596662 -199067691 - AluJo SINE Alu -105 207 122 1650 110 40 4 chr1 43596671 43596898 -199067455 + AluSc SINE Alu 1 235 -74 2682 184 42 33 chr1 43596900 43597442 -199066911 + MER21A LTR ERV1 385 931 0 5848 204 20 30 chr1 43597442 43598628 -199065725 + MER21A-int LTR ERV1 1 1175 -3016 614 272 56 15 chr1 43598738 43598933 -199065420 - MLT1J LTR MaLR -300 211 9 2246 123 0 18 chr1 43599843 43600185 -199064168 - MER1B DNA MER1_type -1 336 1 257 212 0 76 chr1 43600243 43600445 -199063908 + (CA)n Simple_repeat Simple_repeat 1 186 0 357 315 194 0 chr1 43600936 43601101 -199063252 - MIR SINE MIR -15 247 51 329 311 72 58 chr1 43601785 43602270 -199062083 - L2 LINE L2 -374 2940 2449 488 271 88 3 chr1 43602310 43602529 -199061824 + MIR SINE MIR 18 253 -9 1877 134 10 43 chr1 43603112 43603417 -199060936 - AluJb SINE Alu -15 297 3 282 116 0 0 chr1 43603428 43603471 -199060882 - AluSp/q SINE Alu -8 295 253 804 126 0 0 chr1 43603471 43603582 -199060771 - AluSq/x SINE Alu -202 111 1 363 273 187 11 chr1 43603707 43603985 -199060368 + L2 LINE L2 2244 2570 -744 690 170 4 2 chr1 43604156 43604386 -199059967 + AluJo SINE Alu 1 279 -33 189 0 0 0 chr1 43604388 43604409 -199059944 + (GGAGAA)n Simple_repeat Simple_repeat 3 23 0 1808 149 39 3 chr1 43604466 43604748 -199059605 + AluJb SINE Alu 1 292 -20 26 0 0 0 chr1 43604770 43604796 -199059557 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr1 43604912 43604951 -199059402 + AT_rich Low_complexity Low_complexity 1 39 0 2413 97 0 0 chr1 43604976 43605275 -199059078 - AluSx SINE Alu -13 299 1 292 238 25 0 chr1 43605321 43605401 -199058952 - Charlie8 DNA MER1_type -2258 159 78 1915 107 96 14 chr1 43605401 43605681 -199058672 + AluSx SINE Alu 3 305 -7 511 103 0 0 chr1 43605682 43605750 -199058603 + PABL_A LTR ERV1 251 318 -342 203 189 0 0 chr1 43605813 43605850 -199058503 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 354 332 40 25 chr1 43606374 43606576 -199057777 - MIR SINE MIR 0 262 58 841 208 67 122 chr1 43607032 43607170 -199057183 + MER63B DNA MER1_type 1 145 -917 2205 106 0 3 chr1 43607170 43607488 -199056865 + AluSq SINE Alu 1 317 0 841 208 67 122 chr1 43607488 43607594 -199056759 + MER63B DNA MER1_type 145 255 -807 2012 167 3 0 chr1 43607594 43607899 -199056454 - AluJb SINE Alu -6 306 1 841 208 67 122 chr1 43607899 43608002 -199056351 + MER63B DNA MER1_type 255 362 -700 2507 85 0 0 chr1 43608002 43608308 -199056045 - AluY SINE Alu -5 306 1 1873 156 10 16 chr1 43608309 43608623 -199055730 - AluJo SINE Alu 0 312 1 841 208 67 122 chr1 43608623 43608731 -199055622 + MER63B DNA MER1_type 361 436 0 493 99 0 0 chr1 43608995 43609066 -199055287 + MER41A LTR ERV1 398 468 -86 234 260 70 50 chr1 43609511 43609611 -199054742 + L2 LINE L2 2686 2787 -527 2301 123 0 0 chr1 43609669 43609978 -199054375 + AluSc SINE Alu 1 309 0 309 246 139 0 chr1 43609981 43610103 -199054250 - MIR SINE MIR -6 256 118 2398 102 3 3 chr1 43610161 43610474 -199053879 - AluSq SINE Alu 0 313 1 204 328 0 0 chr1 43610714 43610778 -199053575 + CT-rich Low_complexity Low_complexity 4 67 0 1950 143 34 0 chr1 43610892 43611299 -199053054 + AluSc SINE Alu 1 417 0 1724 183 11 0 chr1 43611336 43611615 -199052738 + AluSx SINE Alu 3 284 -28 251 275 75 12 chr1 43611642 43611722 -199052631 + HAL1 LINE L1 2 86 -2421 2043 105 56 14 chr1 43611768 43612053 -199052300 + AluSx SINE Alu 2 298 -14 27 0 0 0 chr1 43612101 43612128 -199052225 + AT_rich Low_complexity Low_complexity 1 27 0 307 145 72 0 chr1 43612132 43612201 -199052152 + L1M4 LINE L1 5254 5327 -847 1713 157 10 39 chr1 43612206 43612347 -199052006 + AluJo SINE Alu 1 145 -167 2000 158 0 3 chr1 43612347 43612644 -199051709 + AluSx SINE Alu 1 296 -16 1713 157 10 39 chr1 43612644 43612807 -199051546 + AluJo SINE Alu 145 296 -16 982 184 0 30 chr1 43612810 43612978 -199051375 + AluJb SINE Alu 136 298 -14 656 133 0 0 chr1 43612987 43613100 -199051253 + L1M4 LINE L1 5325 5437 -741 1839 148 3 80 chr1 43613103 43613239 -199051114 + AluSx SINE Alu 1 146 -166 2042 130 7 3 chr1 43613239 43613532 -199050821 + AluSx SINE Alu 1 294 -18 2185 122 0 7 chr1 43613534 43613849 -199050504 + AluSq SINE Alu 1 313 0 1839 148 3 80 chr1 43613849 43614047 -199050306 + AluSx SINE Alu 147 312 0 250 137 123 27 chr1 43614056 43614129 -199050224 + L1M4 LINE L1 5417 5496 -682 2227 107 0 19 chr1 43614140 43614448 -199049905 + AluSx SINE Alu 4 305 -7 300 27 0 0 chr1 43614458 43614495 -199049858 + (TCTCCC)n Simple_repeat Simple_repeat 2 38 0 7646 45 4 40 chr1 43614495 43616060 -199048293 + SVA Other Other 3 1353 -33 185 0 40 0 chr1 43616060 43616085 -199048268 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 7646 45 4 40 chr1 43616085 43616118 -199048235 + SVA Other Other 1353 1386 0 1281 86 0 51 chr1 43616169 43616534 -199047819 - AluSg/x SINE Alu -1 308 122 1272 186 43 75 chr1 43616173 43616359 -199047994 - AluJb SINE Alu 0 312 139 2035 110 0 3 chr1 43616359 43616651 -199047702 - AluSx SINE Alu -15 297 7 1272 186 43 75 chr1 43616651 43616786 -199047567 - AluJb SINE Alu -173 139 1 275 164 14 41 chr1 43616786 43616859 -199047494 + L1MB3 LINE L1 6113 6183 0 * 1440 224 76 141 chr1 43616856 43617422 -199046931 + HAL1 LINE L1 116 717 -1790 2060 102 0 35 chr1 43617422 43617554 -199046799 + AluSq SINE Alu 11 146 -167 2286 69 0 30 chr1 43617554 43617858 -199046495 + AluY SINE Alu 1 295 -16 2060 102 0 35 chr1 43617858 43618038 -199046315 + AluSq SINE Alu 146 312 -1 1440 224 76 141 chr1 43618038 43618234 -199046119 + HAL1 LINE L1 717 924 -1583 679 191 56 0 chr1 43618234 43618360 -199045993 - FLAM_A SINE Alu 0 133 1 1440 224 76 141 chr1 43618360 43618685 -199045668 + HAL1 LINE L1 924 1134 -1373 664 134 7 141 chr1 43618707 43618856 -199045497 + FLAM_C SINE Alu 2 130 -13 1852 151 0 10 chr1 43619032 43619331 -199045022 + AluSx SINE Alu 1 296 -16 2202 85 3 0 chr1 43619332 43619650 -199044703 + AluY SINE Alu 1 319 0 1529 221 46 134 chr1 43619683 43620442 -199043911 - MER21B LTR ERV1 -149 714 23 2873 233 30 16 chr1 43620457 43621185 -199043168 + HAL1 LINE L1 1376 2116 -391 1497 138 3 81 chr1 43621185 43621481 -199042872 + AluJb SINE Alu 31 303 -9 2873 233 30 16 chr1 43621481 43621495 -199042858 + HAL1 LINE L1 2116 2128 -379 186 133 0 0 chr1 43621555 43621585 -199042768 + (A)n Simple_repeat Simple_repeat 1 30 0 2230 117 0 0 chr1 43621586 43621893 -199042460 + AluSx SINE Alu 1 307 -5 500 153 0 2 chr1 43621967 43622190 -199042163 + AluSg SINE Alu 42 312 0 23 86 0 0 chr1 43622284 43622342 -199042011 + AT_rich Low_complexity Low_complexity 1 58 0 1903 170 50 22 chr1 43622911 43623275 -199041078 + THE1C LTR MaLR 2 375 0 1718 149 28 10 chr1 43623313 43623602 -199040751 + AluJo SINE Alu 9 302 -10 729 95 0 0 chr1 43623602 43623697 -199040656 + AluSx SINE Alu 39 133 -179 1173 46 33 0 chr1 43623699 43623852 -199040501 + L1PA5 LINE L1 5997 6154 0 1240 112 11 0 chr1 43623876 43624064 -199040289 + AluSx SINE Alu 118 307 -3 498 260 16 8 chr1 43624092 43624219 -199040134 - L2 LINE L2 -19 3294 3167 298 257 36 100 chr1 43624389 43624481 -199039872 + LTR67 LTR ERVL 427 510 -47 2252 60 0 4 chr1 43624481 43624798 -199039555 - AluY SINE Alu 0 316 1 298 257 36 100 chr1 43624798 43624844 -199039509 + LTR67 LTR ERVL 510 557 0 829 168 7 13 chr1 43625484 43625633 -199038720 + FRAM SINE Alu 6 153 -23 426 180 60 30 chr1 43625917 43626017 -199038336 - MIR SINE MIR -58 204 102 25 0 0 0 chr1 43626614 43626639 -199037714 + GC_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chr1 43626826 43626857 -199037496 + GC_rich Low_complexity Low_complexity 1 31 0 191 167 28 0 chr1 43628184 43628220 -199036133 - MIR SINE MIR -116 146 110 273 243 14 14 chr1 43628436 43628510 -199035843 - L2 LINE L2 -7 3306 3233 343 303 110 7 chr1 43628952 43629097 -199035256 + MIR3 SINE MIR 1 160 -48 426 265 146 7 chr1 43633341 43633514 -199030839 + MIR SINE MIR 17 212 -50 1978 131 0 0 chr1 43633671 43633961 -199030392 + AluJb SINE Alu 1 290 -22 340 284 55 16 chr1 43634125 43634252 -199030101 - MIR SINE MIR -125 137 6 186 229 300 0 chr1 43634670 43634740 -199029613 - MIR SINE MIR -131 131 41 382 288 27 9 chr1 43635024 43635135 -199029218 - MIR SINE MIR -75 187 75 469 240 44 37 chr1 43636023 43636230 -199028123 + MIR SINE MIR 8 262 0 188 200 0 29 chr1 43636594 43636629 -199027724 - MER5A DNA MER1_type 0 189 156 2194 75 7 0 chr1 43636638 43636930 -199027423 + AluSg SINE Alu 1 294 -16 1428 141 19 83 chr1 43637102 43637434 -199026919 + AluJo SINE Alu 1 312 0 882 186 0 24 chr1 43637444 43637611 -199026742 + MIR SINE MIR 74 236 -26 208 234 91 52 chr1 43637992 43638069 -199026284 + MIR3 SINE MIR 114 193 -15 247 382 40 7 chr1 43638088 43638240 -199026113 - L2 LINE L2 -942 2372 2216 986 208 120 60 chr1 43638243 43638405 -199025948 + AluJo SINE Alu 1 189 -113 2281 104 0 0 chr1 43638405 43638714 -199025639 - AluSx SINE Alu -3 309 1 986 208 120 60 chr1 43638714 43638835 -199025518 + AluJo SINE Alu 189 301 -1 1298 73 0 0 chr1 43638835 43638999 -199025354 + AluSg SINE Alu 3 166 -144 660 178 53 133 chr1 43638999 43639159 -199025194 + MLT1C LTR MaLR 261 399 -68 1545 142 56 40 chr1 43639159 43639462 -199024891 - AluSg SINE Alu -2 308 1 660 178 53 133 chr1 43639462 43639526 -199024827 + MLT1C LTR MaLR 399 467 0 749 187 0 0 chr1 43639644 43639767 -199024586 + AluSq/x SINE Alu 3 125 -187 2351 64 13 0 chr1 43639984 43640282 -199024071 - AluSp SINE Alu -11 302 1 2353 60 0 7 chr1 43642100 43642400 -199021953 - AluY SINE Alu -13 298 1 532 265 119 41 chr1 43642550 43642679 -199021674 - MIR SINE MIR -9 253 99 1426 168 10 45 chr1 43642679 43642988 -199021365 + AluJo SINE Alu 1 298 -14 532 265 119 41 chr1 43642988 43643077 -199021276 - MIR SINE MIR -163 99 18 2073 98 23 10 chr1 43643166 43643472 -199020881 - AluSg SINE Alu 0 310 1 2012 113 7 0 chr1 43643473 43643765 -199020588 - AluSp SINE Alu -19 294 1 207 0 0 0 chr1 43643902 43643925 -199020428 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1863 106 33 4 chr1 43643927 43644200 -199020153 - AluSq SINE Alu -32 281 1 446 271 220 19 chr1 43644355 43644569 -199019784 - L2 LINE L2 -5 3308 3052 2122 95 3 3 chr1 43644591 43644897 -199019456 + AluSx SINE Alu 1 306 -6 590 361 19 5 chr1 43645363 43645568 -199018785 - MIR SINE MIR -6 256 49 391 326 94 6 chr1 43645707 43645881 -199018472 + MIR SINE MIR 30 217 -45 542 309 73 0 chr1 43646382 43646560 -199017793 + MIR SINE MIR 54 244 -18 760 109 0 0 chr1 43646883 43646993 -199017360 + HY1 scRNA scRNA 2 111 -1 2227 87 6 31 chr1 43647304 43647625 -199016728 - AluSq SINE Alu 0 313 1 2268 96 0 0 chr1 43647739 43648042 -199016311 - AluSg SINE Alu -7 303 1 786 137 74 103 chr1 43648267 43648359 -199015994 - FRAM SINE Alu -137 175 82 201 39 0 0 chr1 43648359 43648385 -199015968 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2018 117 0 0 chr1 43648385 43648666 -199015687 - AluSc SINE Alu -28 281 1 2069 116 7 0 chr1 43648666 43648968 -199015385 - AluSq SINE Alu -8 305 2 786 137 74 103 chr1 43648968 43649048 -199015305 - FRAM SINE Alu -227 85 6 29 0 0 0 chr1 43649053 43649082 -199015271 + AT_rich Low_complexity Low_complexity 1 29 0 1883 96 44 7 chr1 43649276 43649573 -199014780 - AluSc SINE Alu 0 307 1 276 128 0 0 chr1 43650391 43650430 -199013923 - MER4E LTR ERV1 -74 705 667 260 264 95 66 chr1 43650673 43650798 -199013555 - MIR3 SINE MIR -51 157 27 742 146 46 23 chr1 43651216 43651346 -199013007 - FLAM_C SINE Alu 0 133 1 225 0 0 0 chr1 43651516 43651541 -199012812 + (T)n Simple_repeat Simple_repeat 1 25 0 2221 88 0 7 chr1 43651610 43651916 -199012437 - AluY SINE Alu -7 304 1 285 51 0 0 chr1 43651993 43652032 -199012321 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 295 279 58 0 chr1 43652609 43652695 -199011658 - MIR SINE MIR -30 232 142 227 323 219 26 chr1 43652839 43653061 -199011292 - L2 LINE L2 -337 2977 2799 2253 92 0 0 chr1 43653061 43653353 -199011000 - AluSg SINE Alu -18 292 1 227 323 219 26 chr1 43653353 43653554 -199010799 - L2 LINE L2 -515 2799 2472 444 299 101 41 chr1 43653562 43653593 -199010760 - L1ME4a LINE L1 -3 6118 6090 2294 94 0 7 chr1 43653593 43653900 -199010453 + AluSp SINE Alu 1 305 -8 444 299 101 41 chr1 43653900 43654136 -199010217 - L1ME4a LINE L1 -31 6090 5835 1098 197 34 0 chr1 43654144 43654352 -199010001 + MER20 DNA MER1_type 1 215 -4 21 36 0 0 chr1 43654357 43654385 -199009968 + AT_rich Low_complexity Low_complexity 1 28 0 585 181 11 0 chr1 43654397 43654491 -199009862 - FLAM_A SINE Alu -27 115 21 2070 107 30 0 chr1 43654520 43654819 -199009534 - AluSp SINE Alu -5 308 1 4615 204 120 107 chr1 43654822 43655430 -199008923 - L1MC3 LINE L1 -27 7758 7160 498 274 0 0 chr1 43655430 43655547 -199008806 - MLT1F1 LTR MaLR -450 117 1 4615 204 120 107 chr1 43655547 43655779 -199008574 - L1MC3 LINE L1 -625 7160 6933 261 0 0 0 chr1 43655779 43655808 -199008545 + (TG)n Simple_repeat Simple_repeat 2 30 0 4615 204 120 107 chr1 43655808 43656350 -199008003 - L1MC3 LINE L1 -852 6933 6400 1494 186 7 30 chr1 43656350 43656646 -199007707 + AluJb SINE Alu 1 289 -23 4615 204 120 107 chr1 43656646 43656978 -199007375 - L1MC3 LINE L1 -1385 6400 6074 1691 132 48 0 chr1 43656978 43657250 -199007103 - AluJb SINE Alu -27 285 1 4615 204 120 107 chr1 43657250 43657355 -199006998 - L1MC3 LINE L1 -1711 6074 5972 2123 106 3 0 chr1 43657355 43657647 -199006706 - AluSp SINE Alu -18 295 3 4615 204 120 107 chr1 43657647 43658030 -199006323 - L1MC3 LINE L1 -1813 5972 5596 9977 62 5 57 chr1 43658030 43659492 -199004861 - SVA Other Other 0 1386 1 2242 79 0 0 chr1 43659493 43659783 -199004570 - AluSq SINE Alu -23 290 1 4615 204 120 107 chr1 43659783 43659898 -199004455 - L1MC3 LINE L1 -2189 5596 5484 2178 106 0 3 chr1 43659898 43660200 -199004153 - AluSq SINE Alu -12 301 1 4615 204 120 107 chr1 43660200 43660368 -199003985 - L1MC3 LINE L1 -2301 5484 5114 1911 53 0 8 chr1 43660372 43660615 -199003738 + AluY SINE Alu 58 298 -13 196 306 179 22 chr1 43660743 43660877 -199003476 + MIR3 SINE MIR 7 161 -47 2236 93 3 0 chr1 43661116 43661418 -199002935 + AluSp SINE Alu 1 303 -10 1542 147 32 70 chr1 43661559 43661871 -199002482 - AluJo SINE Alu -12 300 1 1057 138 23 6 chr1 43662202 43662376 -199001977 + AluSg/x SINE Alu 116 292 -20 658 179 29 8 chr1 43662428 43662673 -199001680 + CT-rich Low_complexity Low_complexity 1 250 0 1492 178 36 50 chr1 43662700 43663003 -199001350 - AluJb SINE Alu 0 302 4 509 269 80 77 chr1 43663056 43663405 -199000948 - L2 LINE L2 -1004 2310 1961 882 161 21 106 chr1 43663896 43663942 -199000411 - MER20 DNA MER1_type 0 219 171 2355 52 38 0 chr1 43663942 43664233 -199000120 - AluY SINE Alu -9 302 1 882 161 21 106 chr1 43664233 43664375 -198999978 - MER20 DNA MER1_type -48 171 52 1783 117 23 0 chr1 43664375 43664631 -198999722 + AluSq SINE Alu 1 262 -51 882 161 21 106 chr1 43664631 43664677 -198999676 - MER20 DNA MER1_type -167 52 4 301 279 0 0 chr1 43664724 43664828 -198999525 + T-rich Low_complexity Low_complexity 1 104 0 274 322 17 42 chr1 43665068 43665090 -198999263 + L2 LINE L2 3158 3179 -93 1666 167 21 0 chr1 43665090 43665377 -198998976 - AluJo SINE Alu -19 293 1 274 322 17 42 chr1 43665377 43665472 -198998881 + L2 LINE L2 3179 3272 0 322 285 0 88 chr1 43665996 43666133 -198998220 - L1ME3A LINE L1 -9 6161 6037 3043 152 24 40 chr1 43666241 43667174 -198997179 - L1MB3 LINE L1 0 6183 5570 1615 223 9 119 chr1 43666412 43666607 -198997746 - L1ME3A LINE L1 -163 6003 5788 2199 116 7 0 chr1 43666607 43666917 -198997436 - AluSx SINE Alu 0 312 1 1615 223 9 119 chr1 43666917 43667192 -198997161 - L1ME3A LINE L1 -378 5788 5617 575 178 110 25 chr1 43667192 43667310 -198997043 - FLAM_C SINE Alu -1 132 5 1615 223 9 119 chr1 43667310 43667467 -198996886 - L1ME3A LINE L1 -549 5617 5444 2089 105 3 0 chr1 43667478 43667763 -198996590 - AluSg SINE Alu -24 286 1 410 253 59 35 chr1 43667789 43667959 -198996394 - L1MC5 LINE L1 -51 7910 7737 1067 186 5 5 chr1 43667981 43668174 -198996179 - MER46A DNA MER2_type 0 236 44 1773 162 10 0 chr1 43668949 43669257 -198995096 - AluJb SINE Alu -1 311 1 2202 94 0 31 chr1 43669270 43669590 -198994763 - AluSg SINE Alu 0 310 1 1078 231 35 12 chr1 43670008 43670264 -198994089 - MIR SINE MIR 0 262 1 651 204 166 13 chr1 43671454 43671611 -198992742 + MER5A DNA MER1_type 9 189 0 296 313 20 70 chr1 43671614 43671815 -198992538 + MIR SINE MIR 12 202 -60 302 326 61 0 chr1 43671938 43672036 -198992317 + L1 LINE L1 4733 4836 -1310 1699 163 16 10 chr1 43672052 43672229 -198992124 - AluJb SINE Alu -3 309 128 2167 111 0 3 chr1 43672229 43672536 -198991817 - AluSg SINE Alu -4 306 1 1699 163 16 10 chr1 43672536 43672665 -198991688 - AluJb SINE Alu -184 128 1 213 256 22 100 chr1 43672670 43672760 -198991593 - MIR SINE MIR -56 152 70 1287 131 112 9 chr1 43672906 43673120 -198991233 + MER46A DNA MER2_type 1 236 0 1688 152 3 36 chr1 43673409 43673712 -198990641 + AluJb SINE Alu 1 293 -19 346 232 248 0 chr1 43673824 43673949 -198990404 - MIR SINE MIR -17 245 90 2077 71 13 62 chr1 43674849 43675157 -198989196 + AluSx SINE Alu 1 293 -19 23 68 0 0 chr1 43675172 43675216 -198989137 + AT_rich Low_complexity Low_complexity 1 44 0 251 222 79 0 chr1 43675594 43675657 -198988696 + L2 LINE L2 3200 3267 -5 1650 167 13 26 chr1 43676595 43676900 -198987453 - AluJo SINE Alu -11 301 1 306 174 207 107 chr1 43676900 43677021 -198987332 - MER106B DNA MER1_type -926 133 1 22 56 0 0 chr1 43677897 43677933 -198986420 + AT_rich Low_complexity Low_complexity 1 36 0 573 221 25 16 chr1 43678061 43678183 -198986170 - FLAM_A SINE Alu -10 123 1 275 311 0 0 chr1 43678491 43678565 -198985788 + MIR SINE MIR 187 260 -2 351 350 56 7 chr1 43678869 43679012 -198985341 - L2 LINE L2 0 3272 3123 889 269 32 28 chr1 43679181 43679430 -198984923 + MIR SINE MIR 1 250 -12 2267 78 3 0 chr1 43679724 43680017 -198984336 - AluSg SINE Alu -16 294 1 292 304 0 13 chr1 43680780 43680859 -198983494 + MIR3 SINE MIR 108 185 -23 535 274 142 19 chr1 43681840 43682052 -198982301 - MIR SINE MIR -12 250 13 190 243 86 14 chr1 43685354 43685424 -198978929 - L2 LINE L2 -850 2464 2390 428 293 110 12 chr1 43686294 43686458 -198977895 + MIR SINE MIR 74 253 -9 670 170 109 0 chr1 43687775 43687922 -198976431 - L1MB4 LINE L1 -18 6162 6000 215 400 127 14 chr1 43687942 43688162 -198976191 - L2 LINE L2 -27 3245 3001 385 277 203 5 chr1 43688395 43688597 -198975756 - MIR SINE MIR -19 243 2 195 231 0 0 chr1 43688836 43688875 -198975478 - MIR SINE MIR -8 254 216 251 247 176 0 chr1 43689131 43689216 -198975137 - MIR SINE MIR -67 141 42 1447 188 20 10 chr1 43689762 43689881 -198974472 + AluJb SINE Alu 3 119 -193 219 114 0 0 chr1 43689881 43689916 -198974437 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1447 188 20 10 chr1 43689916 43690088 -198974265 + AluJb SINE Alu 119 297 -15 868 227 39 128 chr1 43690417 43690901 -198973452 - MLT1J2 LTR MaLR 0 450 10 187 283 0 19 chr1 43690984 43691037 -198973316 + MIR3 SINE MIR 121 172 -36 360 252 172 7 chr1 43691315 43691466 -198972887 + MIR SINE MIR 75 250 -12 382 349 14 7 chr1 43691715 43691861 -198972492 + L2 LINE L2 2935 3081 -191 808 200 117 67 chr1 43691875 43692115 -198972238 - MIR SINE MIR 0 262 11 250 295 105 9 chr1 43692293 43692398 -198971955 - MIR SINE MIR -16 246 132 181 299 78 26 chr1 43692376 43692453 -198971900 + L2 LINE L2 3225 3305 -8 * 308 235 59 12 chr1 43692463 43692548 -198971805 + L2 LINE L2 3200 3288 -25 442 171 57 24 chr1 43692588 43692683 -198971670 - L1MA9 LINE L1 0 6312 6211 417 39 0 0 chr1 43692683 43692734 -198971619 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 442 171 57 24 chr1 43692734 43692761 -198971592 - L1MA9 LINE L1 -101 6211 6186 204 266 31 16 chr1 43692775 43692839 -198971514 - MIR SINE MIR -195 67 3 3427 135 53 73 chr1 43693330 43693663 -198970690 + L1MB2 LINE L1 5446 5784 -387 2216 100 10 0 chr1 43693663 43693964 -198970389 + AluSx SINE Alu 1 304 -8 3427 135 53 73 chr1 43693964 43693975 -198970378 + L1MB2 LINE L1 5784 5794 -377 1780 158 0 20 chr1 43693975 43694272 -198970081 + AluJo SINE Alu 1 291 -21 3427 135 53 73 chr1 43694272 43694392 -198969961 + L1MB2 LINE L1 5794 5915 -256 1022 139 238 4 chr1 43694392 43694636 -198969717 + AluJb SINE Alu 1 301 -1 3427 135 53 73 chr1 43694636 43694864 -198969489 + L1MB2 LINE L1 5915 6126 -45 247 238 71 48 chr1 43694940 43695024 -198969329 - MLT1K LTR MaLR -321 267 182 247 333 0 0 chr1 43695420 43695501 -198968852 - MLT1K LTR MaLR -18 570 490 1389 155 113 0 chr1 43696219 43696484 -198967869 - AluJo SINE Alu -17 295 1 669 54 22 0 chr1 43696669 43696761 -198967592 - AluSx SINE Alu -2 307 214 1078 78 0 14 chr1 43696761 43696903 -198967450 - AluSx SINE Alu -171 141 2 464 306 6 52 chr1 43697168 43697341 -198967012 - MIR3 SINE MIR -28 180 16 459 318 143 27 chr1 43697484 43697707 -198966646 - L2 LINE L2 -4 3268 3020 1042 141 238 13 chr1 43697717 43697964 -198966389 + AluSg1 SINE Alu 1 298 0 681 288 258 15 chr1 43698078 43698824 -198965529 - L2 LINE L2 -597 2717 1700 577 207 18 0 chr1 43698975 43699086 -198965267 - MER81 DNA DNA 0 114 2 836 279 28 36 chr1 43699574 43699821 -198964532 - MIR SINE MIR -16 246 2 1091 275 77 56 chr1 43699848 43700051 -198964302 - L2 LINE L2 -1 3312 3115 366 23 0 0 chr1 43700051 43700094 -198964259 + (TG)n Simple_repeat Simple_repeat 1 43 0 1091 275 77 56 chr1 43700094 43700107 -198964246 - L2 LINE L2 -198 3115 3104 1927 116 0 11 chr1 43700107 43700383 -198963970 - AluSx SINE Alu -39 273 1 1091 275 77 56 chr1 43700383 43700655 -198963698 - L2 LINE L2 -209 3104 2794 2042 112 0 31 chr1 43700655 43700976 -198963377 - AluSx SINE Alu -1 311 1 1091 275 77 56 chr1 43700976 43701139 -198963214 - L2 LINE L2 -519 2794 2636 1892 135 30 3 chr1 43702069 43702373 -198961980 - AluJb SINE Alu 0 312 1 180 313 12 0 chr1 43702526 43702606 -198961747 + L2 LINE L2 2140 2220 -1094 1003 199 55 30 chr1 43703437 43703473 -198960880 - MLT1D LTR MaLR 0 505 471 917 190 125 37 chr1 43703473 43703689 -198960664 - MER8 DNA MER2_type -3 236 2 1003 199 55 30 chr1 43703689 43704091 -198960262 - MLT1D LTR MaLR -34 471 28 218 327 64 9 chr1 43704123 43704233 -198960120 + L2 LINE L2 2556 2671 -643 2133 95 0 36 chr1 43704465 43704771 -198959582 - AluSx SINE Alu -17 295 1 246 290 97 11 chr1 43704772 43704865 -198959488 + MIR SINE MIR 34 134 -128 597 116 9 18 chr1 43704865 43704977 -198959376 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 2093 126 0 0 chr1 43704982 43705284 -198959069 - AluJb SINE Alu -9 303 2 192 189 311 33 chr1 43705285 43705375 -198958978 + MIR SINE MIR 111 225 -37 1855 156 3 0 chr1 43705375 43705683 -198958670 + AluJo SINE Alu 1 309 -3 1997 109 0 39 chr1 43706595 43706906 -198957447 - AluSx SINE Alu -1 311 13 414 57 0 0 chr1 43707011 43707064 -198957289 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 195 42 0 0 chr1 43707068 43707092 -198957261 + (TCCCC)n Simple_repeat Simple_repeat 1 24 0 1932 114 6 56 chr1 43707092 43707416 -198956937 - AluSx SINE Alu -4 308 1 192 237 68 68 chr1 43707676 43707735 -198956618 - L2 LINE L2 -107 3165 3107 561 234 13 136 chr1 43708378 43708613 -198955740 - MIR SINE MIR -1 261 56 396 301 40 40 chr1 43709848 43710024 -198954329 - MER91A DNA MER1_type 0 196 21 1599 135 83 0 chr1 43710617 43710883 -198953470 + AluJo SINE Alu 5 292 -20 326 284 20 47 chr1 43711351 43711499 -198952854 + MIR3 SINE MIR 33 176 -32 524 287 39 6 chr1 43711644 43711825 -198952528 + MIR SINE MIR 76 262 0 220 179 0 0 chr1 43712270 43712309 -198952044 + MIR SINE MIR 106 144 -118 1600 181 10 7 chr1 43713003 43713296 -198951057 + AluJb SINE Alu 1 294 -18 866 225 120 78 chr1 43713296 43713686 -198950667 - L1MC4a LINE L1 -1717 6091 5682 2268 75 7 0 chr1 43713847 43714141 -198950212 - AluSc SINE Alu -13 296 1 1964 100 3 55 chr1 43714379 43714690 -198949663 + AluSx SINE Alu 5 299 -13 2010 83 21 31 chr1 43714698 43714987 -198949366 + AluSx SINE Alu 1 286 -26 321 344 0 0 chr1 43714990 43715080 -198949273 - L1MC4 LINE L1 -1339 6703 6614 371 191 0 12 chr1 43715082 43715166 -198949187 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 245 254 127 0 chr1 43715202 43715312 -198949041 - LTR40c LTR ERVL -169 296 173 248 238 49 74 chr1 43715524 43715646 -198948707 + L1MEc LINE L1 1229 1347 -5049 1569 62 0 14 chr1 43715672 43715881 -198948472 + AluY SINE Alu 6 211 -100 344 93 0 39 chr1 43715881 43715955 -198948398 + AluSp/q SINE Alu 214 251 -52 895 190 67 5 chr1 43715956 43715989 -198948364 + AluJb SINE Alu 87 117 -196 200 31 62 0 chr1 43715989 43716021 -198948332 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 895 190 67 5 chr1 43716021 43716202 -198948151 + AluJb SINE Alu 117 313 0 1986 142 7 0 chr1 43716207 43716516 -198947837 + AluSx SINE Alu 2 312 0 234 0 0 0 chr1 43716517 43716543 -198947810 + (GGAA)n Simple_repeat Simple_repeat 2 27 0 378 256 75 20 chr1 43716543 43716626 -198947727 + L1MEc LINE L1 1353 1430 -4786 1661 133 3 90 chr1 43716626 43716949 -198947404 - AluJb SINE Alu -17 295 1 378 256 75 20 chr1 43716949 43717064 -198947289 + L1MEc LINE L1 1430 1810 -4406 250 175 0 0 chr1 43717065 43717105 -198947248 + MER2 DNA MER2_type 1 40 -305 238 94 0 0 chr1 43717107 43717139 -198947214 - MER2 DNA MER2_type -256 89 58 677 164 10 0 chr1 43717146 43717250 -198947103 - FLAM_C SINE Alu -36 107 3 27 73 0 0 chr1 43717261 43717316 -198947037 + AT_rich Low_complexity Low_complexity 1 55 0 2133 121 0 0 chr1 43717323 43717628 -198946725 - AluSx SINE Alu -7 305 1 374 200 43 14 chr1 43717628 43717698 -198946655 + MER2 DNA MER2_type 274 345 0 576 297 19 9 chr1 43717698 43717928 -198946425 + L1ME3A LINE L1 1562 1793 -4603 2189 108 0 0 chr1 43717928 43718225 -198946128 + AluSx SINE Alu 1 297 -15 3009 211 82 47 chr1 43718235 43718710 -198945643 + L1MC4 LINE L1 6673 7130 -912 2167 126 0 0 chr1 43718710 43719019 -198945334 + AluSx SINE Alu 1 309 -3 3009 211 82 47 chr1 43719019 43719468 -198944885 + L1MC4 LINE L1 7130 7630 -412 190 0 32 32 chr1 43719572 43719603 -198944750 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9059 71 78 13 chr1 43719606 43720906 -198943447 - SVA Other Other 0 1386 2 214 0 0 98 chr1 43720916 43720967 -198943386 + (GGGAGA)n Simple_repeat Simple_repeat 5 50 0 1952 141 0 17 chr1 43720968 43721267 -198943086 - AluJb SINE Alu -18 294 1 578 213 62 83 chr1 43721267 43721605 -198942748 + L1MC4 LINE L1 7712 8042 0 609 203 29 74 chr1 43721613 43721732 -198942621 + L1ME3A LINE L1 2340 2463 -3752 2333 70 0 19 chr1 43721732 43722047 -198942306 + AluY SINE Alu 1 309 -2 1973 90 52 0 chr1 43722049 43722361 -198941992 + AluSg SINE Alu 2 327 0 609 203 29 74 chr1 43722361 43722413 -198941940 + L1ME3A LINE L1 2464 2517 -3698 545 187 45 52 chr1 43722413 43722547 -198941806 + FLAM_A SINE Alu 1 133 0 609 203 29 74 chr1 43722547 43722681 -198941672 + L1ME3A LINE L1 2517 2636 -3579 1032 197 22 0 chr1 43722687 43722865 -198941488 + AluJb SINE Alu 129 310 -2 312 247 41 14 chr1 43722886 43722959 -198941394 + L1ME3A LINE L1 3321 3395 -2820 414 302 14 0 chr1 43722968 43723107 -198941246 + L1ME3A LINE L1 5596 5736 -503 436 237 40 61 chr1 43723117 43723341 -198941012 + L1ME3A LINE L1 5803 6038 -193 345 277 9 45 chr1 43723341 43723453 -198940900 - LTR33 LTR ERVL -102 419 312 840 284 10 0 chr1 43723501 43723705 -198940648 - LTR33 LTR ERVL -306 215 10 997 188 6 0 chr1 43723941 43724106 -198940247 + AluJo SINE Alu 1 166 -146 257 227 45 0 chr1 43724106 43724172 -198940181 + L2 LINE L2 3011 3079 -234 1839 143 0 42 chr1 43724178 43724486 -198939867 + AluSx SINE Alu 1 295 -17 333 345 126 50 chr1 43724681 43724942 -198939411 - L2 LINE L2 -1904 1410 1170 1597 176 17 23 chr1 43724942 43724974 -198939379 - AluJo SINE Alu -10 302 271 2375 82 0 0 chr1 43724974 43725280 -198939073 + AluY SINE Alu 1 306 -5 1597 176 17 23 chr1 43725280 43725548 -198938805 - AluJo SINE Alu -41 271 4 333 345 126 50 chr1 43725548 43725787 -198938566 - L2 LINE L2 -2144 1170 872 2274 72 27 0 chr1 43726070 43726362 -198937991 - AluSx SINE Alu -12 300 1 3230 108 80 33 chr1 43726362 43726401 -198937952 - MER49 LTR ERV1 -293 630 594 2079 136 7 3 chr1 43726401 43726711 -198937642 + AluSx SINE Alu 1 311 -1 3230 108 80 33 chr1 43726711 43727053 -198937300 - MER49 LTR ERV1 -329 594 208 2316 99 0 3 chr1 43727053 43727356 -198936997 - AluSx SINE Alu -10 302 1 3230 108 80 33 chr1 43727356 43727575 -198936778 - MER49 LTR ERV1 -715 208 1 1199 210 30 0 chr1 43727923 43728185 -198936168 + L1MB7 LINE L1 5906 6175 -9 371 252 151 22 chr1 43728203 43728342 -198936011 + L1M4 LINE L1 3077 3233 -2913 534 258 23 0 chr1 43728541 43728673 -198935680 - MIR SINE MIR -47 215 81 371 304 14 40 chr1 43728792 43728940 -198935413 - MIR3 SINE MIR -32 176 33 184 257 29 71 chr1 43729184 43729254 -198935099 - L2 LINE L2 -1859 1455 1389 305 281 137 7 chr1 43729454 43729593 -198934760 - MIR SINE MIR -82 180 24 2085 112 20 0 chr1 43729593 43729889 -198934464 - AluSg SINE Alu -8 302 1 1592 100 45 0 chr1 43730104 43730324 -198934029 - MER30 DNA MER1_type 0 230 1 1456 151 70 33 chr1 43730341 43730612 -198933741 - AluJo SINE Alu -9 303 23 1593 148 53 32 chr1 43730629 43730913 -198933440 + AluJo SINE Alu 1 290 -22 3986 166 13 63 chr1 43730914 43731508 -198932845 - L1MB3 LINE L1 -20 6163 5655 2217 96 3 7 chr1 43731508 43731800 -198932553 - AluSx SINE Alu -21 291 1 3986 166 13 63 chr1 43731800 43732259 -198932094 - L1MB3 LINE L1 -528 5655 5175 1798 98 0 42 chr1 43732260 43732525 -198931828 + AluSc SINE Alu 48 301 -8 2069 114 0 0 chr1 43733037 43733317 -198931036 - AluSx SINE Alu -13 299 20 672 207 9 40 chr1 43733499 43733726 -198930627 - L1MB3 LINE L1 -3744 2402 2183 596 220 9 0 chr1 43733729 43733838 -198930515 - FLAM_A SINE Alu -19 123 14 1959 123 40 10 chr1 43733857 43734158 -198930195 - AluSx SINE Alu -2 310 1 2479 48 0 0 chr1 43734169 43734464 -198929889 - AluY SINE Alu -16 295 1 306 227 0 0 chr1 43734849 43734924 -198929429 + CT-rich Low_complexity Low_complexity 1 75 0 2154 119 3 0 chr1 43734924 43735227 -198929126 - AluSx SINE Alu -6 306 3 334 382 82 24 chr1 43735603 43735980 -198928373 - L2 LINE L2 -9 3263 2865 2392 62 0 40 chr1 43736016 43736339 -198928014 + AluY SINE Alu 1 310 -1 345 236 71 8 chr1 43736456 43736504 -198927849 + MER103 DNA DNA 5 49 -117 290 25 0 25 chr1 43736504 43736544 -198927809 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 345 236 71 8 chr1 43736544 43736622 -198927731 + MER103 DNA DNA 49 139 -27 263 355 62 29 chr1 43736942 43737218 -198927135 - L2 LINE L2 -1004 2310 2026 335 312 87 97 chr1 43737308 43737428 -198926925 + L1ME4a LINE L1 5527 5647 -474 1849 135 29 0 chr1 43737428 43737702 -198926651 + AluSx SINE Alu 19 300 -12 335 312 87 97 chr1 43737702 43738074 -198926279 + L1ME4a LINE L1 5647 6072 -49 341 255 0 31 chr1 43738075 43738173 -198926180 + MIR SINE MIR 81 175 -87 30 27 0 0 chr1 43738269 43738306 -198926047 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr1 43738381 43738414 -198925939 + AT_rich Low_complexity Low_complexity 1 33 0 540 283 50 25 chr1 43738630 43738828 -198925525 + MIR SINE MIR 60 262 0 254 173 19 0 chr1 43738844 43738896 -198925457 + L2 LINE L2 2925 2977 -336 208 231 0 26 chr1 43739560 43739638 -198924715 + C-rich Low_complexity Low_complexity 2 77 0 210 170 21 0 chr1 43739939 43739986 -198924367 + (CCCCG)n Simple_repeat Simple_repeat 2 49 0 23 54 0 0 chr1 43740128 43740165 -198924188 + GC_rich Low_complexity Low_complexity 1 37 0 30 69 0 0 chr1 43740240 43740298 -198924055 + GC_rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr1 43740347 43740382 -198923971 + GC_rich Low_complexity Low_complexity 1 35 0 443 294 50 7 chr1 43741357 43741526 -198922827 - MIR SINE MIR -62 146 24 269 253 58 0 chr1 43742061 43742161 -198922192 + MIR SINE MIR 74 179 -55 198 200 0 0 chr1 43742447 43742487 -198921866 - MIR SINE MIR -143 119 80 327 67 0 0 chr1 43742815 43742860 -198921493 - AluSp SINE Alu -108 195 151 410 300 56 28 chr1 43743272 43743452 -198920901 + MIR3 SINE MIR 20 204 -4 223 327 50 0 chr1 43743785 43743886 -198920467 + MIR SINE MIR 19 124 -84 576 211 35 14 chr1 43743931 43744073 -198920280 - L2 LINE L2 0 3313 3169 434 306 60 29 chr1 43744142 43744338 -198920015 + MIR SINE MIR 8 199 -62 217 299 15 0 chr1 43744406 43744473 -198919880 - MIR SINE MIR -115 147 80 1764 186 0 7 chr1 43744639 43744934 -198919419 - AluJo SINE Alu -18 294 2 292 265 24 12 chr1 43745189 43745272 -198919081 - MIR SINE MIR -92 170 87 478 315 21 0 chr1 43745348 43745491 -198918862 + MIR SINE MIR 8 153 -109 1167 143 148 14 chr1 43745514 43745731 -198918622 + AluSx SINE Alu 51 296 -16 2274 94 0 3 chr1 43745792 43746101 -198918252 + AluSq SINE Alu 1 308 -5 540 249 49 60 chr1 43746272 43746386 -198917967 + LTR16A LTR ERVL 1 115 -335 2168 101 20 0 chr1 43746386 43746682 -198917671 - AluSq SINE Alu -7 306 5 540 249 49 60 chr1 43746682 43746906 -198917447 + LTR16A LTR ERVL 115 325 -125 501 241 112 6 chr1 43746994 43747164 -198917189 + MIR SINE MIR 75 262 0 1788 150 0 14 chr1 43747665 43747951 -198916402 - AluJb SINE Alu -30 282 1 388 331 50 15 chr1 43748142 43748310 -198916043 + MIR SINE MIR 9 179 -63 945 241 76 6 chr1 43748315 43748771 -198915582 + MLT1F1 LTR MaLR 12 567 0 247 230 348 7 chr1 43751354 43751489 -198912864 - L1MC/D LINE L1 -2106 5702 5522 336 298 105 49 chr1 43751493 43751778 -198912575 + L2 LINE L2 3008 3308 -5 181 343 76 59 chr1 43752580 43752869 -198911484 + L2 LINE L2 2923 3216 -56 289 215 152 0 chr1 43753875 43753954 -198910399 + MIR SINE MIR 48 138 -70 271 361 39 0 chr1 43754504 43754634 -198909719 + MIR SINE MIR 13 147 -115 230 261 109 0 chr1 43754883 43754975 -198909378 + MLT1F1 LTR MaLR 7 108 -459 1569 264 27 10 chr1 43755006 43755495 -198908858 + L1MC3 LINE L1 7225 7721 -64 809 144 0 0 chr1 43755499 43755617 -198908736 - FRAM SINE Alu -17 159 42 1361 312 142 20 chr1 43755668 43756740 -198907613 - L2 LINE L2 -597 2717 1515 21 36 0 0 chr1 43757739 43757767 -198906586 + GC_rich Low_complexity Low_complexity 1 28 0 1619 172 16 41 chr1 43759344 43759664 -198904689 - AluJb SINE Alu 0 312 1 1749 152 30 30 chr1 43759686 43759982 -198904371 - AluSx SINE Alu -16 296 1 180 0 0 0 chr1 43760458 43760478 -198903875 + (TG)n Simple_repeat Simple_repeat 1 20 0 399 267 35 0 chr1 43761217 43761333 -198903020 + MIR3 SINE MIR 58 177 -31 243 322 0 11 chr1 43762125 43762212 -198902141 + (TG)n Simple_repeat Simple_repeat 1 86 0 1642 162 54 17 chr1 43762502 43762798 -198901555 - AluJb SINE Alu -5 307 1 208 286 0 16 chr1 43763056 43763119 -198901234 + MIR SINE MIR 14 75 -187 467 162 267 0 chr1 43766222 43766327 -198898026 + FLAM_C SINE Alu 1 133 0 428 309 165 9 chr1 43766809 43767539 -198896814 - L2 LINE L2 -312 3001 2146 298 337 145 0 chr1 43768975 43769141 -198895212 - MER117 DNA MER1_type -3 194 5 1757 140 18 7 chr1 43770034 43770320 -198894033 + AluSx SINE Alu 1 289 -23 207 346 128 23 chr1 43771177 43771310 -198893043 + MIR SINE MIR 116 262 0 298 167 131 24 chr1 43772644 43772728 -198891625 + MIR SINE MIR 35 127 -81 918 203 26 60 chr1 43773541 43773601 -198890752 - MER58A DNA MER1_type -2196 224 163 2463 124 36 29 chr1 43773601 43773690 -198890663 + MLT2D LTR ERVL 1 88 -326 1614 171 14 7 chr1 43773690 43773982 -198890371 - AluJb SINE Alu -18 294 1 2463 124 36 29 chr1 43773982 43774303 -198890050 + MLT2D LTR ERVL 88 414 0 918 203 26 60 chr1 43774303 43774474 -198889879 - MER58A DNA MER1_type -2257 163 1 409 285 114 13 chr1 43775869 43776027 -198888326 - L2 LINE L2 0 3272 3099 276 170 0 0 chr1 43776059 43776112 -198888241 + (TG)n Simple_repeat Simple_repeat 2 54 0 1814 292 137 38 chr1 43776112 43776394 -198887959 - L2 LINE L2 -846 2468 2215 1649 248 85 65 chr1 43776394 43776455 -198887898 + MER20B DNA MER1_type 1 59 -725 1459 162 13 59 chr1 43776455 43776758 -198887595 - AluJb SINE Alu -23 289 1 1649 248 85 65 chr1 43776758 43776901 -198887452 + MER20B DNA MER1_type 59 198 -586 1752 164 13 13 chr1 43776901 43777212 -198887141 + AluJb SINE Alu 1 311 -1 1649 248 85 65 chr1 43777212 43777772 -198886581 + MER20B DNA MER1_type 198 781 -3 1814 292 137 38 chr1 43777772 43777926 -198886427 - L2 LINE L2 -1099 2215 2078 1299 142 78 0 chr1 43777926 43778145 -198886208 + MER46A DNA MER2_type 1 236 0 1814 292 137 38 chr1 43778145 43778410 -198885943 - L2 LINE L2 -1236 2078 1841 2219 94 3 0 chr1 43778410 43778708 -198885645 - AluSp SINE Alu -13 300 2 1814 292 137 38 chr1 43778708 43779289 -198885064 - L2 LINE L2 -1473 1841 974 1881 144 10 0 chr1 43779813 43780105 -198884248 - AluSq SINE Alu -18 295 1 246 282 55 45 chr1 43780126 43780236 -198884117 + HAL1 LINE L1 15 125 -2382 * 834 240 58 8 chr1 43780209 43780467 -198883886 + L1MB4 LINE L1 5023 5293 -853 745 200 79 12 chr1 43780467 43780632 -198883721 + AluJo SINE Alu 127 302 -10 3277 186 68 21 chr1 43780633 43780795 -198883558 + L1MB4 LINE L1 5311 5464 -716 2238 92 0 16 chr1 43780795 43781110 -198883243 + AluSg SINE Alu 1 310 0 3277 186 68 21 chr1 43781110 43781664 -198882689 + L1MB4 LINE L1 5464 6061 -119 1467 243 122 11 chr1 43781723 43782156 -198882197 + HAL1 LINE L1 116 596 -1911 851 232 187 41 chr1 43782196 43782635 -198881718 + HAL1 LINE L1 1978 2480 -27 231 310 99 28 chr1 43783806 43783948 -198880405 - L2 LINE L2 -862 2452 2301 293 250 80 50 chr1 43785945 43786045 -198878308 + AluJo SINE Alu 120 222 -80 261 83 0 0 chr1 43786047 43786083 -198878270 + (A)n Simple_repeat Simple_repeat 1 36 0 343 287 49 28 chr1 43787652 43787795 -198876558 - MIR3 SINE MIR -10 198 53 478 309 78 11 chr1 43788585 43788776 -198875577 + L2 LINE L2 2592 2795 -519 1174 172 76 73 chr1 43789938 43790032 -198874321 + MER58B DNA MER1_type 35 127 -2293 2108 90 0 0 chr1 43790032 43790321 -198874032 + AluSq SINE Alu 1 289 -24 1174 172 76 73 chr1 43790321 43790529 -198873824 + MER58B DNA MER1_type 127 338 -3 3406 77 22 9 chr1 43790530 43790567 -198873786 - LTR46 LTR ERV1 0 460 425 243 0 0 0 chr1 43790567 43790594 -198873759 + (CA)n Simple_repeat Simple_repeat 2 28 0 3406 77 22 9 chr1 43790594 43791010 -198873343 - LTR46 LTR ERV1 -35 425 1 317 295 176 33 chr1 43791042 43791443 -198872910 - L2 LINE L2 -213 3100 2588 1914 137 0 35 chr1 43791473 43791788 -198872565 - AluJb SINE Alu -8 304 1 421 194 54 21 chr1 43792359 43792452 -198871901 + MER21B LTR ERV1 1 96 -767 1409 251 18 18 chr1 43792491 43792830 -198871523 + MER21B LTR ERV1 98 436 -427 1721 179 0 0 chr1 43793294 43793579 -198870774 + AluSx SINE Alu 4 288 -24 1948 146 0 10 chr1 43793589 43793898 -198870455 + AluSx SINE Alu 1 306 -6 226 277 188 0 chr1 43794022 43794123 -198870230 - MIR SINE MIR -72 190 71 1810 111 16 63 chr1 43794530 43794845 -198869508 - AluJb SINE Alu -12 300 1 267 328 57 16 chr1 43794904 43795026 -198869327 + L2 LINE L2 3141 3267 -5 942 216 11 0 chr1 43795536 43795721 -198868632 - MER5A DNA MER1_type -1 188 2 1501 219 75 71 chr1 43795750 43795852 -198868501 + MER97c DNA MER1_type? 21 121 -969 1683 140 32 14 chr1 43795852 43796167 -198868186 + AluJb SINE Alu 1 320 0 2200 116 0 0 chr1 43796169 43796470 -198867883 + AluSx SINE Alu 3 303 -9 1501 219 75 71 chr1 43796470 43796840 -198867513 + MER97c DNA MER1_type? 121 501 -589 1633 177 35 1 chr1 43796993 43797467 -198866886 + L1MB4 LINE L1 5073 5558 -622 930 140 100 9 chr1 43797446 43797669 -198866684 - L1M4 LINE L1 -716 5462 5221 * 2034 160 11 0 chr1 43797670 43798026 -198866327 + L1MB4 LINE L1 5564 5923 -251 873 152 18 29 chr1 43798031 43798081 -198866272 + L1MB4 LINE L1 6011 6060 -120 2226 177 59 14 chr1 43798081 43798522 -198865831 - LOR1b LTR ERV1 0 461 1 873 152 18 29 chr1 43798522 43798642 -198865711 + L1MB4 LINE L1 6060 6179 -1 598 291 70 17 chr1 43798661 43798891 -198865462 + L1ME1 LINE L1 11 252 -6607 466 236 88 102 chr1 43799181 43799524 -198864829 + L1ME1 LINE L1 952 1289 -5566 685 164 0 0 chr1 43799633 43799737 -198864616 + AluJb SINE Alu 1 104 -208 2062 75 11 4 chr1 43799774 43800075 -198864278 - AluSg SINE Alu 0 303 1 4059 126 44 61 chr1 43800095 43800894 -198863459 + LTR1 LTR ERV1 1 785 0 875 186 10 44 chr1 43800894 43801098 -198863255 + AluJb SINE Alu 102 298 -14 2159 236 38 22 chr1 43801107 43801824 -198862529 + L1ME1 LINE L1 1289 2016 -4839 216 0 0 0 chr1 43801838 43801862 -198862491 + (TG)n Simple_repeat Simple_repeat 1 24 0 1046 99 0 7 chr1 43801864 43802015 -198862338 - AluSg/x SINE Alu -5 304 155 1355 137 0 0 chr1 43802023 43802227 -198862126 + AluSg/x SINE Alu 97 300 -12 1058 236 44 19 chr1 43802255 43802620 -198861733 + L1ME1 LINE L1 2874 3198 -3759 614 206 0 93 chr1 43802608 43802671 -198861682 + L1ME1 LINE L1 6076 6143 -832 * 2034 138 0 0 chr1 43802671 43802983 -198861370 + AluSx SINE Alu 1 312 0 614 206 0 93 chr1 43802983 43803113 -198861240 + L1ME1 LINE L1 6143 6251 -724 1142 175 76 0 chr1 43803121 43803227 -198861126 + AluJb SINE Alu 16 112 -200 522 0 0 0 chr1 43803227 43803285 -198861068 + (CA)n Simple_repeat Simple_repeat 2 59 0 1142 175 76 0 chr1 43803285 43803401 -198860952 + AluJb SINE Alu 112 255 -57 2320 203 81 13 chr1 43803412 43804007 -198860346 + L1ME1 LINE L1 6338 6972 -5 1721 125 3 62 chr1 43804154 43804459 -198859894 + AluSx SINE Alu 15 301 -11 302 203 17 0 chr1 43804935 43804994 -198859359 + U7 snRNA snRNA 3 62 -1 520 204 109 64 chr1 43805108 43805301 -198859052 + MER97c DNA MER1_type? 763 978 -112 2256 80 0 0 chr1 43805301 43805612 -198858741 - AluSq SINE Alu 0 311 1 520 204 109 64 chr1 43805612 43805730 -198858623 + MER97c DNA MER1_type? 978 1089 -1 393 262 168 0 chr1 43805779 43805886 -198858467 - L2 LINE L2 0 3313 3189 1092 209 40 0 chr1 43805932 43806133 -198858220 - MER63A DNA MER1_type 0 210 2 1318 225 106 41 chr1 43806262 43806765 -198857588 - L2 LINE L2 0 3313 2781 352 276 65 48 chr1 43806870 43807160 -198857193 - L1M4 LINE L1 -1437 4709 4415 1024 258 88 19 chr1 43807215 43807637 -198856716 - L1M4 LINE L1 -1870 4276 3826 310 146 0 0 chr1 43807720 43807768 -198856585 - LTR65 LTR ERV1 -283 386 339 645 170 36 0 chr1 43807892 43808056 -198856297 - FLAM_C SINE Alu 0 169 2 302 270 9 43 chr1 43808412 43808527 -198855826 - MIR SINE MIR -86 176 66 21 57 0 0 chr1 43808552 43808587 -198855766 + AT_rich Low_complexity Low_complexity 1 35 0 206 306 0 0 chr1 43810656 43810705 -198853648 + polypyrimidine Low_complexity Low_complexity 1 49 0 236 265 0 0 chr1 43810712 43810761 -198853592 + MIR SINE MIR 2 50 -212 430 253 32 0 chr1 43810853 43810948 -198853405 + MIR SINE MIR 55 152 -110 6434 73 14 35 chr1 43811444 43812231 -198852122 + L1MA3 LINE L1 5381 6146 -159 2194 86 0 13 chr1 43812231 43812534 -198851819 + AluSq SINE Alu 1 299 -14 6434 73 14 35 chr1 43812534 43812691 -198851662 + L1MA3 LINE L1 6146 6305 0 308 257 109 20 chr1 43812897 43812998 -198851355 + MIR SINE MIR 151 260 -2 392 147 41 5 chr1 43813069 43813147 -198851206 - LTR50 LTR ERVL 0 795 448 2131 92 0 3 chr1 43813170 43813484 -198850869 + AluSg SINE Alu 1 313 0 1286 233 169 12 chr1 43813485 43813645 -198850708 - LTR50 LTR ERVL -323 472 338 2262 188 24 44 chr1 43813645 43814141 -198850212 - MER66B LTR ERV1 0 486 1 1286 233 169 12 chr1 43814141 43814388 -198849965 - LTR50 LTR ERVL -457 338 1 2222 89 3 13 chr1 43814965 43815280 -198849073 + AluSx SINE Alu 1 312 0 189 171 0 0 chr1 43815447 43815482 -198848871 + A-rich Low_complexity Low_complexity 1 35 0 1050 174 5 24 chr1 43815487 43815699 -198848654 + AluJo SINE Alu 75 282 -30 1319 198 74 80 chr1 43815731 43816205 -198848148 - LTR50 LTR ERVL -174 621 151 2343 208 22 28 chr1 43816210 43816754 -198847599 + MER74A LTR ERVL 1 541 -17 721 150 114 0 chr1 43816779 43816919 -198847434 - LTR50 LTR ERVL -639 156 1 183 255 64 0 chr1 43817191 43817238 -198847115 - L2 LINE L2 -380 2934 2885 769 127 41 123 chr1 43817238 43817353 -198847000 + MLT2C2 LTR ERVL 1 91 -373 758 222 76 0 chr1 43817353 43817497 -198846856 - FRAM SINE Alu -11 155 1 769 127 41 123 chr1 43817497 43817601 -198846752 + MLT2C2 LTR ERVL 91 202 -262 * 1009 202 83 24 chr1 43817570 43817822 -198846531 + MER74A LTR ERVL 41 307 -251 * 1136 173 90 80 chr1 43817791 43817840 -198846513 + MLT2C2 LTR ERVL 161 208 -256 1890 151 0 0 chr1 43817840 43818139 -198846214 + AluJb SINE Alu 1 299 -13 1136 173 90 80 chr1 43818139 43818333 -198846020 + MLT2C2 LTR ERVL 208 411 -53 2094 96 0 4 chr1 43818333 43818645 -198845708 + AluSg SINE Alu 1 311 0 1136 173 90 80 chr1 43818645 43818700 -198845653 + MLT2C2 LTR ERVL 411 464 0 2255 103 3 10 chr1 43818801 43819113 -198845240 - THE1C LTR MaLR -65 310 1 1161 242 100 21 chr1 43819306 43819636 -198844717 - MLT1J2 LTR MaLR -8 442 87 388 242 101 18 chr1 43819628 43819788 -198844565 + MLT1G LTR MaLR 267 495 -95 * 392 202 128 0 chr1 43819775 43819869 -198844484 + MLT2F LTR ERVL 558 663 0 1749 142 42 42 chr1 43820178 43820489 -198843864 - AluJo SINE Alu -1 311 1 21 36 0 0 chr1 43820489 43820517 -198843836 + AT_rich Low_complexity Low_complexity 1 28 0 336 92 154 0 chr1 43820633 43820698 -198843655 - MADE1 DNA Mariner -5 75 1 1030 150 11 53 chr1 43821571 43821758 -198842595 - AluJo SINE Alu -30 282 104 326 284 0 0 chr1 43821958 43822039 -198842314 + L1ME4a LINE L1 4943 5023 -1123 2213 118 14 0 chr1 43822039 43822327 -198842026 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr1 43822327 43822349 -198842004 + (GGAA)n Simple_repeat Simple_repeat 1 22 0 344 313 85 21 chr1 43822510 43822791 -198841562 + L1ME4a LINE L1 5258 5556 -565 245 222 101 30 chr1 43823034 43823133 -198841220 + L1ME4a LINE L1 6014 6119 -2 24 0 0 0 chr1 43823147 43823171 -198841182 + AT_rich Low_complexity Low_complexity 1 24 0 2120 74 63 4 chr1 43823172 43823467 -198840886 + AluY SINE Alu 1 311 0 445 323 44 10 chr1 43823776 43824057 -198840296 + L1ME4a LINE L1 5589 5869 -286 353 74 0 19 chr1 43824076 43824130 -198840223 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 2227 103 24 0 chr1 43824590 43824880 -198839473 + AluSx SINE Alu 1 297 -15 700 156 148 0 chr1 43825006 43825134 -198839219 - MER45A DNA AcHobo -22 156 10 188 241 121 24 chr1 43825340 43825423 -198838930 - MIR SINE MIR -6 256 166 369 286 130 12 chr1 43825451 43825612 -198838741 - MIR SINE MIR -76 186 7 545 259 68 32 chr1 43826139 43826396 -198837957 - MIR SINE MIR 0 262 3 423 0 0 0 chr1 43826938 43826985 -198837368 + (TG)n Simple_repeat Simple_repeat 1 47 0 2059 115 147 41 chr1 43827160 43827576 -198836777 + LTR46 LTR ERV1 1 460 0 737 257 20 15 chr1 43828450 43828523 -198835830 - MER3 DNA MER1_type 0 209 138 2344 105 0 0 chr1 43828523 43828819 -198835534 + AluY SINE Alu 1 296 -15 737 257 20 15 chr1 43828819 43828947 -198835406 - MER3 DNA MER1_type -71 138 7 348 298 56 39 chr1 43829423 43829601 -198834752 + LTR50 LTR ERVL 2 182 -613 317 254 79 55 chr1 43829970 43830135 -198834218 + LTR33A LTR ERVL 333 501 -22 646 284 152 24 chr1 43830136 43830425 -198833928 + MLT1J2 LTR MaLR 125 450 0 326 202 226 8 chr1 43830468 43830592 -198833761 - MIR SINE MIR -25 237 87 246 95 0 0 chr1 43830622 43830664 -198833689 + (TA)n Simple_repeat Simple_repeat 2 43 0 1296 266 86 43 chr1 43830668 43831134 -198833219 + LTR33 LTR ERVL 12 497 -24 1232 323 67 20 chr1 43831176 43831727 -198832626 + MLT1K LTR MaLR 10 586 -2 303 93 0 0 chr1 43831975 43832018 -198832335 + (GA)n Simple_repeat Simple_repeat 1 43 0 955 206 5 58 chr1 43832102 43832170 -198832183 - MIR SINE MIR -43 219 149 2107 134 0 7 chr1 43832170 43832343 -198832010 - AluSx SINE Alu -7 305 132 246 116 0 0 chr1 43832343 43832386 -198831967 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2310 84 3 7 chr1 43832386 43832672 -198831681 - AluSx SINE Alu -27 285 1 2107 134 0 7 chr1 43832672 43832804 -198831549 - AluSx SINE Alu -178 134 1 955 206 5 58 chr1 43832804 43832958 -198831395 - MIR SINE MIR -113 149 9 301 121 12 48 chr1 43833075 43833158 -198831195 + (TTC)n Simple_repeat Simple_repeat 1 80 0 471 276 45 0 chr1 43833723 43833857 -198830496 + MIR SINE MIR 13 152 -110 246 336 0 33 chr1 43834111 43834233 -198830120 + MIR SINE MIR 145 262 0 1569 136 92 7 chr1 43834457 43834730 -198829623 - AluSx SINE Alu 0 312 17 1010 216 3 107 chr1 43834933 43835224 -198829129 + MIR SINE MIR 2 262 0 254 292 79 0 chr1 43835345 43835434 -198828919 - MIR SINE MIR -55 153 58 228 184 0 0 chr1 43837524 43837573 -198826780 + (CA)n Simple_repeat Simple_repeat 2 50 0 238 276 77 65 chr1 43838186 43838356 -198825997 + MIR3 SINE MIR 33 204 -4 195 378 10 20 chr1 43839005 43839103 -198825250 + MIR SINE MIR 49 145 -63 200 364 31 31 chr1 43839360 43839489 -198824864 + L3 LINE CR1 1320 1448 -129 362 250 181 7 chr1 43840481 43840625 -198823728 + MIR3 SINE MIR 25 193 -15 1471 165 4 4 chr1 43840633 43840869 -198823484 - AluJb SINE Alu -5 307 72 222 309 9 27 chr1 43841446 43841556 -198822797 - MIR SINE MIR -59 149 42 251 290 216 4 chr1 43841909 43842154 -198822199 + L2 LINE L2 2356 2652 -662 1641 181 0 65 chr1 43842192 43842359 -198821994 - AluJb SINE Alu -12 300 124 2584 63 0 0 chr1 43842359 43842661 -198821692 - AluY SINE Alu -9 302 1 2366 84 0 3 chr1 43842667 43842963 -198821390 - AluY SINE Alu -16 295 1 1641 181 0 65 chr1 43842963 43843109 -198821244 - AluJb SINE Alu -193 119 1 209 313 16 0 chr1 43843143 43843207 -198821146 + L2 LINE L2 3246 3310 -3 285 270 27 0 chr1 43843344 43843418 -198820935 + L2 LINE L2 3238 3313 0 421 315 162 11 chr1 43844938 43845297 -198819056 - L2 LINE L2 -92 3221 2809 2291 109 0 0 chr1 43845377 43845671 -198818682 + AluSq SINE Alu 1 294 -19 196 364 57 0 chr1 43846539 43846627 -198817726 - L2 LINE L2 -40 3232 3140 361 296 59 47 chr1 43848153 43848322 -198816031 - MIR SINE MIR -46 216 46 1973 85 69 62 chr1 43850131 43850436 -198813917 + AluSc SINE Alu 1 307 -2 340 242 91 10 chr1 43850916 43851015 -198813338 - MER91A DNA MER1_type 0 196 90 * 574 279 13 19 chr1 43851014 43851168 -198813185 - MER91A DNA MER1_type -20 176 24 2535 77 3 0 chr1 43852067 43852397 -198811956 - AluSp SINE Alu 0 331 1 250 237 0 75 chr1 43852427 43852520 -198811833 - MIR3 SINE MIR -114 94 9 2621 61 0 3 chr1 43852567 43852878 -198811475 + AluY SINE Alu 1 310 -1 2348 90 0 17 chr1 43853304 43853604 -198810749 - AluSg SINE Alu -15 295 1 778 241 196 45 chr1 43853701 43854079 -198810274 - MLT1K LTR MaLR 0 588 154 1182 232 117 48 chr1 43854749 43855295 -198809058 - MLT1H1 LTR MaLR -1 554 3 183 80 0 0 chr1 43856300 43856325 -198808028 + (CAG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 43856359 43856380 -198807973 + GC_rich Low_complexity Low_complexity 1 21 0 220 297 213 16 chr1 43857550 43857799 -198806554 - L2 LINE L2 -10 3262 2965 24 0 0 0 chr1 43858428 43858452 -198805901 + AT_rich Low_complexity Low_complexity 1 24 0 262 336 112 8 chr1 43858626 43858751 -198805602 - L2 LINE L2 -560 2754 2617 211 273 164 23 chr1 43859925 43860053 -198804300 + MIR3 SINE MIR 2 147 -61 675 185 167 12 chr1 43860640 43860802 -198803551 - MER3 DNA MER1_type -21 188 2 249 346 131 0 chr1 43860837 43860944 -198803409 + L2 LINE L2 3192 3312 -1 1257 106 0 0 chr1 43861204 43861364 -198802989 + AluSq SINE Alu 146 305 -8 432 290 156 18 chr1 43861624 43861907 -198802446 - L2 LINE L2 -757 2557 2236 297 218 0 0 chr1 43862501 43862556 -198801797 - MER91A DNA MER1_type 0 196 142 438 281 35 0 chr1 43862661 43862775 -198801578 - MER91A DNA MER1_type -57 139 22 456 236 91 55 chr1 43863152 43863351 -198801002 + MER63A DNA MER1_type 1 206 -4 247 320 117 0 chr1 43863353 43863456 -198800897 + MIR SINE MIR 76 190 -72 2062 101 19 0 chr1 43863772 43864040 -198800313 + AluSx SINE Alu 1 273 -39 240 35 0 0 chr1 43864041 43864070 -198800283 + (GGAGA)n Simple_repeat Simple_repeat 1 29 0 2280 70 30 7 chr1 43864115 43864417 -198799936 + AluY SINE Alu 1 309 -2 287 292 62 0 chr1 43869794 43869890 -198794463 + MIR SINE MIR 34 135 -73 241 289 0 0 chr1 43869971 43870023 -198794330 - MER91A DNA MER1_type 0 190 139 527 343 0 6 chr1 43870031 43870197 -198794156 - MER91A DNA MER1_type -30 166 2 224 206 48 63 chr1 43870758 43870821 -198793532 + L3 LINE CR1 1413 1474 -103 511 272 0 9 chr1 43872871 43872985 -198791368 - MIR SINE MIR -148 114 2 1155 156 54 54 chr1 43873247 43873321 -198791032 + MER58A DNA MER1_type 1 74 -2346 2371 85 0 0 chr1 43873321 43873626 -198790727 + AluSc SINE Alu 1 305 -4 1155 156 54 54 chr1 43873626 43873775 -198790578 + MER58A DNA MER1_type 73 224 0 601 259 0 7 chr1 43874500 43874635 -198789718 - MER117 DNA MER1_type -62 135 2 453 246 119 8 chr1 43875488 43875614 -198788739 + MER91C DNA MER1_type 1 140 0 797 199 196 72 chr1 43876052 43876343 -198788010 - MER102a DNA MER1_type -3 327 1 2459 73 0 3 chr1 43876500 43876813 -198787540 - AluSx SINE Alu 0 312 1 2315 194 75 2 chr1 43877739 43878178 -198786175 - MLT1F LTR MaLR -71 471 1 1181 58 0 32 chr1 43878922 43879076 -198785277 + AluSc SINE Alu 1 149 -160 630 154 36 0 chr1 43879083 43879193 -198785160 - MLT1A1 LTR MaLR -251 114 1 576 134 0 89 chr1 43879200 43879218 -198785135 - L1PA10 LINE L1 -4 6164 6146 225 0 0 0 chr1 43879218 43879243 -198785110 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 576 134 0 89 chr1 43879243 43879277 -198785076 - L1PA10 LINE L1 -22 6146 6111 2187 92 3 16 chr1 43879277 43879606 -198784747 - AluSx SINE Alu 0 312 1 576 134 0 89 chr1 43879606 43879664 -198784689 - L1PA10 LINE L1 -57 6111 6063 1254 291 62 38 chr1 43879825 43880278 -198784075 + LTR16B LTR ERVL 1 464 0 194 279 63 25 chr1 43880588 43880667 -198783686 + MIR SINE MIR 30 111 -97 268 300 136 36 chr1 43881038 43881258 -198783095 - L2 LINE L2 -190 3082 2841 364 197 0 0 chr1 43881321 43881387 -198782966 - MIR SINE MIR -90 172 107 421 300 59 6 chr1 43882459 43882629 -198781724 - L2 LINE L2 -1014 2300 2122 * 487 267 80 27 chr1 43882621 43882771 -198781582 - MIR SINE MIR -20 242 85 190 320 0 0 chr1 43882755 43882833 -198781520 + MIR SINE MIR 55 132 -76 * 319 347 33 20 chr1 43883041 43883191 -198781162 - L2 LINE L2 -7 3265 3114 1023 181 0 0 chr1 43883688 43883854 -198780499 - FRAM SINE Alu 0 166 1 582 202 9 0 chr1 43884448 43884557 -198779796 + MIR SINE MIR 13 122 -140 2364 94 67 6 chr1 43884557 43884918 -198779435 - MSTA LTR MaLR -45 383 1 689 249 68 19 chr1 43884929 43885194 -198779159 + L2 LINE L2 2906 3183 -130 323 182 0 0 chr1 43885350 43885405 -198778948 - MER94 DNA DNA -52 82 28 428 234 9 0 chr1 43885422 43885529 -198778824 - L2 LINE L2 -515 2799 2692 183 341 112 6 chr1 43885498 43885668 -198778685 + L2 LINE L2 1949 2136 -1178 * 1251 177 23 9 chr1 43885668 43885883 -198778470 + MER20 DNA MER1_type 2 219 0 1180 200 61 19 chr1 43885892 43886202 -198778151 - MER33 DNA MER1_type -1 323 1 1476 176 3 48 chr1 43886258 43886382 -198777971 + AluJo SINE Alu 5 133 -179 2459 59 0 3 chr1 43886382 43886688 -198777665 - AluY SINE Alu -5 306 2 1476 176 3 48 chr1 43886688 43886853 -198777500 + AluJo SINE Alu 133 281 -31 804 246 40 9 chr1 43886906 43887130 -198777223 + MIR SINE MIR 29 259 -3 787 278 115 10 chr1 43887139 43887434 -198776919 + L2 LINE L2 2154 2479 -835 38 22 0 0 chr1 43888832 43888877 -198775476 + GC_rich Low_complexity Low_complexity 1 45 0 499 259 19 38 chr1 43889679 43889837 -198774516 + MIR SINE MIR 78 232 -30 473 233 8 42 chr1 43889875 43889995 -198774358 + MIR SINE MIR 31 146 -62 861 192 11 28 chr1 43890086 43890263 -198774090 - FRAM SINE Alu -10 166 1 200 340 68 0 chr1 43891010 43891113 -198773240 - L2 LINE L2 -8 3264 3155 217 302 0 0 chr1 43891380 43891433 -198772920 - L2 LINE L2 -6 3266 3214 426 271 123 39 chr1 43891466 43891669 -198772684 + MIR SINE MIR 34 253 -9 2348 88 0 7 chr1 43891995 43892302 -198772051 + AluSc SINE Alu 1 305 -4 309 261 159 0 chr1 43892310 43892448 -198771905 + MIR3 SINE MIR 42 201 -7 312 306 19 0 chr1 43892829 43892937 -198771416 + MIR SINE MIR 35 144 -118 506 320 87 18 chr1 43893685 43893960 -198770393 - L2 LINE L2 -25 3288 2995 688 315 109 31 chr1 43894114 43894166 -198770187 - L2 LINE L2 -509 2805 2758 2135 107 3 10 chr1 43894166 43894474 -198769879 + AluSx SINE Alu 1 306 -6 688 315 109 31 chr1 43894474 43894834 -198769519 - L2 LINE L2 -556 2758 2361 31 26 0 0 chr1 43895384 43895422 -198768931 + GC_rich Low_complexity Low_complexity 1 38 0 31 68 0 0 chr1 43895483 43895542 -198768811 + GC_rich Low_complexity Low_complexity 1 59 0 709 284 46 0 chr1 43896010 43896228 -198768125 + MIR SINE MIR 34 261 -1 424 209 35 35 chr1 43896376 43896491 -198767862 + MIR SINE MIR 32 146 -62 526 247 67 15 chr1 43896748 43896949 -198767404 + MIR3 SINE MIR 28 230 -32 288 275 0 0 chr1 43897105 43897174 -198767179 + MER117 DNA MER1_type 4 72 -125 602 247 18 42 chr1 43897232 43897398 -198766955 - MIR SINE MIR -44 218 57 205 272 97 9 chr1 43897978 43898092 -198766261 - L2 LINE L2 -1259 2055 1932 251 235 294 0 chr1 43898360 43898462 -198765891 - L2 LINE L2 -2 3270 3139 376 329 120 0 chr1 43899050 43899217 -198765136 - MER5A DNA MER1_type -2 187 1 246 282 12 24 chr1 43899342 43899427 -198764926 - MIR SINE MIR -42 220 137 600 188 121 7 chr1 43899477 43899626 -198764727 + MIR SINE MIR 49 214 -48 2420 70 0 16 chr1 43899659 43899975 -198764378 + AluY SINE Alu 1 311 0 2288 94 3 0 chr1 43899982 43900290 -198764063 + AluSx SINE Alu 1 309 -3 229 360 26 18 chr1 43900294 43900408 -198763945 - MIR3 SINE MIR -87 121 7 816 257 28 14 chr1 43900717 43900931 -198763422 - MIR SINE MIR -44 218 2 409 295 96 0 chr1 43901179 43901345 -198763008 - MIR SINE MIR -67 195 14 200 59 29 0 chr1 43904023 43904057 -198760296 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1103 287 109 18 chr1 43904410 43905126 -198759227 + L2 LINE L2 2511 3312 -1 361 305 1 39 chr1 43905732 43905876 -198758477 + MIR SINE MIR 28 168 -40 232 338 0 0 chr1 43905862 43905939 -198758414 - MIR SINE MIR 0 262 186 * 300 305 62 28 chr1 43905888 43906065 -198758288 + MIR SINE MIR 78 260 -2 2271 87 7 0 chr1 43906206 43906506 -198757847 + AluSx SINE Alu 1 302 -10 281 330 0 51 chr1 43906555 43906608 -198757745 - MER5B DNA MER1_type -8 170 116 2204 97 0 0 chr1 43906608 43906931 -198757422 + AluSg SINE Alu 1 323 0 281 330 0 51 chr1 43906931 43906993 -198757360 - MER5B DNA MER1_type -62 116 59 245 262 16 0 chr1 43907142 43907203 -198757150 + L2 LINE L2 3241 3302 -11 437 319 64 10 chr1 43907355 43907559 -198756794 - MIR SINE MIR -46 216 2 467 301 79 60 chr1 43907698 43907976 -198756377 - MLT1J LTR MaLR -10 501 163 1565 169 25 47 chr1 43907976 43908295 -198756058 - AluJb SINE Alu 0 312 1 467 301 79 60 chr1 43908295 43908459 -198755894 - MLT1J LTR MaLR -348 163 4 2141 102 23 3 chr1 43909343 43909648 -198754705 + AluSq SINE Alu 3 313 0 364 284 0 58 chr1 43909751 43909906 -198754447 - MIR SINE MIR -46 216 71 844 128 0 8 chr1 43909907 43910024 -198754329 + FLAM_C SINE Alu 2 117 -16 2260 98 0 3 chr1 43910042 43910347 -198754006 + AluSq SINE Alu 1 304 -9 562 296 20 25 chr1 43910403 43910602 -198753751 - MIR SINE MIR -1 261 64 567 283 172 18 chr1 43910786 43911345 -198753008 - L2 LINE L2 -5 3308 2628 321 361 58 19 chr1 43911362 43911687 -198752666 + L2 LINE L2 774 1116 -2198 1412 206 64 138 chr1 43911687 43911903 -198752450 + MLT1E LTR MaLR 1 231 -362 2197 95 7 3 chr1 43911903 43912199 -198752154 + AluSc SINE Alu 1 297 -12 1412 206 64 138 chr1 43912199 43912622 -198751731 + MLT1E LTR MaLR 231 593 0 321 361 58 19 chr1 43912622 43912656 -198751697 + L2 LINE L2 1116 1147 -2167 2365 72 0 0 chr1 43912676 43912982 -198751371 + AluY SINE Alu 6 311 0 1427 226 62 36 chr1 43913214 43913426 -198750927 - L1ME1 LINE L1 -6 6160 5955 2273 110 0 0 chr1 43913426 43913735 -198750618 - AluSg SINE Alu -1 309 1 1427 226 62 36 chr1 43913735 43913938 -198750415 - L1ME1 LINE L1 -211 5955 5734 805 179 8 0 chr1 43914076 43914210 -198750143 + AluJo SINE Alu 2 136 -176 29 28 0 0 chr1 43914210 43914246 -198750107 + AT_rich Low_complexity Low_complexity 1 36 0 4300 44 38 49 chr1 43914364 43914973 -198749380 + LTR66 LTR ERVL 1 602 -8 1766 176 13 0 chr1 43915115 43915422 -198748931 + AluJb SINE Alu 1 311 -1 2029 125 0 3 chr1 43915472 43915776 -198748577 - AluSx SINE Alu -9 303 1 2329 67 0 0 chr1 43915957 43916292 -198748061 + AluY SINE Alu 1 311 0 5321 145 46 88 chr1 43916725 43917923 -198746430 + pTR5 LTR ERV1 136 2437 -1 673 311 100 25 chr1 43918352 43918962 -198745391 + L2 LINE L2 2234 2889 -425 1818 155 93 21 chr1 43918983 43919369 -198744984 - MLT2C2 LTR ERVL -50 414 1 627 324 64 52 chr1 43919369 43919792 -198744561 + L2 LINE L2 2884 3311 -2 619 276 89 29 chr1 43919787 43919840 -198744513 - MIR SINE MIR 0 262 214 * 2257 70 3 3 chr1 43919840 43920138 -198744215 - AluY SINE Alu -13 298 1 619 276 89 29 chr1 43920138 43920330 -198744023 - MIR SINE MIR -48 214 2 2264 77 0 3 chr1 43920349 43920648 -198743705 - AluY SINE Alu -13 298 1 181 354 12 24 chr1 43920701 43920783 -198743570 + MIR SINE MIR 21 101 -161 1888 154 6 25 chr1 43920785 43921103 -198743250 - AluJb SINE Alu 0 312 1 2454 81 0 7 chr1 43921120 43921429 -198742924 - AluY SINE Alu -4 307 1 2287 113 0 3 chr1 43921493 43921804 -198742549 - AluSx SINE Alu 0 312 3 2597 11 0 0 chr1 43921830 43922109 -198742244 - AluYa5 SINE Alu -12 299 21 1306 205 150 63 chr1 43922539 43922961 -198741392 + MLT2B1 LTR ERVL 6 390 -130 2390 98 0 0 chr1 43922961 43923268 -198741085 + AluSg SINE Alu 1 307 -3 1306 205 150 63 chr1 43923268 43923306 -198741047 + MLT2B1 LTR ERVL 390 423 -97 2117 135 0 0 chr1 43923306 43923602 -198740751 - AluSx SINE Alu -16 296 1 1306 205 150 63 chr1 43923602 43923614 -198740739 + MLT2B1 LTR ERVL 423 520 0 350 294 109 17 chr1 43923646 43924051 -198740302 + L1M4 LINE L1 3607 4048 -2098 316 286 90 16 chr1 43924089 43924278 -198740075 + L1M4 LINE L1 4107 4309 -1837 1476 122 169 156 chr1 43924343 43924817 -198739536 - LTR12 LTR ERV1 -234 480 1 2279 106 3 0 chr1 43924821 43925123 -198739230 + AluSx SINE Alu 1 303 -9 2394 96 0 0 chr1 43925123 43925424 -198738929 + AluSc SINE Alu 1 301 -8 2412 127 25 30 chr1 43925590 43925887 -198738466 + L1MC1 LINE L1 5592 5888 -445 2169 124 20 0 chr1 43925887 43926186 -198738167 + AluSx SINE Alu 1 305 -7 2412 127 25 30 chr1 43926186 43926328 -198738025 + L1MC1 LINE L1 5888 6029 -304 243 0 0 0 chr1 43926343 43926370 -198737983 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1249 158 0 0 chr1 43926370 43926554 -198737799 - AluSx SINE Alu -64 248 65 1969 167 18 93 chr1 43926554 43926957 -198737396 + LTR12 LTR ERV1 5 437 -277 216 0 0 0 chr1 43926957 43926981 -198737372 + (TA)n Simple_repeat Simple_repeat 2 25 0 2356 68 13 7 chr1 43926983 43927292 -198737061 - AluY SINE Alu 0 311 1 1969 167 18 93 chr1 43927292 43927400 -198736953 + LTR12 LTR ERV1 438 480 -234 531 125 0 0 chr1 43927401 43927473 -198736880 - AluSx SINE Alu -240 73 2 1249 141 75 109 chr1 43927476 43927796 -198736557 + L1MC1 LINE L1 6013 6321 -12 318 314 16 21 chr1 43927785 43927976 -198736377 + L1M4 LINE L1 4478 4667 -1479 * 2209 110 0 0 chr1 43927979 43928279 -198736074 + AluSg SINE Alu 1 300 -10 198 131 66 33 chr1 43928314 43928375 -198735978 + GA-rich Low_complexity Low_complexity 3 65 0 2212 114 13 0 chr1 43928420 43928726 -198735627 + AluSx SINE Alu 1 310 -2 3384 178 21 40 chr1 43928887 43929613 -198734740 + L1MB2 LINE L1 5444 6155 -16 1260 177 83 0 chr1 43929638 43929903 -198734450 - L1MB5 LINE L1 -38 6136 5850 2404 82 0 55 chr1 43929904 43930234 -198734119 + AluSq SINE Alu 1 312 -1 1057 224 30 0 chr1 43930234 43930497 -198733856 + L1MB2 LINE L1 5885 6155 -16 255 152 0 0 chr1 43930502 43930548 -198733805 - L1MB4 LINE L1 -26 6154 6109 316 226 10 29 chr1 43930562 43930664 -198733689 + L1M3 LINE L1 5731 5830 -338 1707 154 52 65 chr1 43930680 43930911 -198733442 - L1MB7 LINE L1 -92 6092 5867 2167 129 0 0 chr1 43930911 43931213 -198733140 + AluJb SINE Alu 5 306 -6 1707 154 52 65 chr1 43931213 43931383 -198732970 - L1MB7 LINE L1 -317 5867 5696 309 248 145 8 chr1 43931524 43931641 -198732712 + L1ME4a LINE L1 5949 6081 -40 360 203 0 0 chr1 43932018 43932082 -198732271 - MER45 DNA AcHobo 0 1581 1518 454 268 169 31 chr1 43932218 43932602 -198731751 - L2 LINE L2 -25 3288 2852 225 170 0 0 chr1 43932670 43932723 -198731630 + MER113 DNA MER1_type? 63 115 -406 351 280 120 67 chr1 43932854 43933079 -198731274 - L2 LINE L2 -528 2786 2550 1410 181 19 27 chr1 43933418 43933678 -198730675 - AluJo SINE Alu -8 304 47 190 205 26 0 chr1 43933735 43933774 -198730579 - MIR SINE MIR -221 41 2 182 284 148 0 chr1 43934058 43934139 -198730214 - L2 LINE L2 -37 3235 3143 2159 121 3 19 chr1 43934345 43934652 -198729701 + AluSq SINE Alu 1 302 -11 218 190 0 35 chr1 43934720 43934778 -198729575 + (CATA)n Simple_repeat Simple_repeat 2 57 0 1295 189 120 4 chr1 43934778 43934919 -198729434 - AluJo SINE Alu -23 289 166 270 0 0 0 chr1 43934919 43934949 -198729404 + (TG)n Simple_repeat Simple_repeat 1 30 0 1295 189 120 4 chr1 43934949 43935066 -198729287 - AluJo SINE Alu -146 166 1 2527 76 3 9 chr1 43935091 43935406 -198728947 + AluSp SINE Alu 1 313 0 419 330 158 21 chr1 43935636 43936009 -198728344 - L2 LINE L2 -23 3290 2867 256 287 199 6 chr1 43936093 43936274 -198728079 - L2 LINE L2 -925 2389 2174 322 167 0 0 chr1 43936296 43936350 -198728003 - MER5A DNA MER1_type -11 178 125 721 182 0 0 chr1 43936350 43936460 -198727893 + FLAM_A SINE Alu 1 110 -32 460 204 129 83 chr1 43936485 43936540 -198727813 - MER5A DNA MER1_type -51 138 87 2519 76 0 0 chr1 43936540 43936844 -198727509 - AluY SINE Alu -7 304 1 460 204 129 83 chr1 43936844 43936920 -198727433 - MER5A DNA MER1_type -102 87 1 439 297 55 8 chr1 43937056 43937184 -198727169 + L2 LINE L2 3134 3267 -5 226 293 49 0 chr1 43937210 43937292 -198727061 - L2 LINE L2 -1293 2021 1936 230 327 60 18 chr1 43937445 43937613 -198726740 + L2 LINE L2 1527 1701 -1613 809 288 90 36 chr1 43937811 43938286 -198726067 - L2 LINE L2 0 3272 2776 2326 64 4 4 chr1 43938294 43938615 -198725738 - AluSc SINE Alu 0 321 1 1832 125 10 74 chr1 43938911 43939047 -198725306 + AluJo SINE Alu 1 144 -168 2185 125 0 0 chr1 43939047 43939343 -198725010 - AluSx SINE Alu -16 296 1 1832 125 10 74 chr1 43939343 43939518 -198724835 + AluJo SINE Alu 144 292 -20 2225 102 0 3 chr1 43939527 43939820 -198724533 + AluSc SINE Alu 7 298 -11 1156 300 39 43 chr1 43939871 43940022 -198724331 - LTR16B LTR ERVL 0 464 314 2435 113 122 27 chr1 43940022 43940427 -198723926 - MER31A LTR ERV1 0 485 33 2307 111 0 3 chr1 43940427 43940733 -198723620 + AluSx SINE Alu 1 305 -7 2435 113 122 27 chr1 43940733 43940770 -198723583 - MER31A LTR ERV1 -452 33 1 1156 300 39 43 chr1 43940770 43941084 -198723269 - LTR16B LTR ERVL -150 314 1 2651 58 0 6 chr1 43941098 43941411 -198722942 - AluY SINE Alu 0 311 1 293 302 58 50 chr1 43941428 43941554 -198722799 + MIR SINE MIR 66 195 -67 2448 92 0 6 chr1 43941554 43941868 -198722485 + AluSq SINE Alu 1 312 -1 293 302 58 50 chr1 43941868 43941880 -198722473 + MIR SINE MIR 195 205 -57 1467 152 0 64 chr1 43941897 43942078 -198722275 - AluJo SINE Alu -6 306 146 2248 97 17 7 chr1 43942078 43942376 -198721977 - AluSp SINE Alu -12 301 1 1467 152 0 64 chr1 43942376 43942458 -198721895 - AluJo SINE Alu -166 146 60 199 286 63 0 chr1 43942517 43942580 -198721773 + L2 LINE L2 3220 3286 -27 223 226 66 16 chr1 43942882 43942956 -198721397 - MIR SINE MIR -74 134 69 425 148 0 0 chr1 43943024 43943085 -198721268 + AluJ/FLAM SINE Alu 2 62 -250 3149 115 87 6 chr1 43943186 43943496 -198720857 - MER49 LTR ERV1 -350 573 290 2442 96 0 3 chr1 43943496 43943797 -198720556 - AluSx SINE Alu -12 300 1 3149 115 87 6 chr1 43943797 43944016 -198720337 - MER49 LTR ERV1 -633 290 1 1162 210 30 0 chr1 43944364 43944626 -198719727 + L1MB7 LINE L1 5906 6175 -9 344 214 160 23 chr1 43944652 43944783 -198719570 + L1M4 LINE L1 3085 3233 -2913 515 258 23 0 chr1 43944982 43945114 -198719239 - MIR SINE MIR -47 215 81 317 291 20 47 chr1 43945233 43945381 -198718972 - MIR3 SINE MIR -32 176 33 184 257 29 71 chr1 43945625 43945695 -198718658 - L2 LINE L2 -1859 1455 1389 302 277 135 7 chr1 43945895 43946036 -198718317 - MIR SINE MIR -82 180 22 2179 112 20 0 chr1 43946036 43946330 -198718023 - AluSg SINE Alu -10 300 1 1553 104 45 0 chr1 43946545 43946765 -198717588 - MER30 DNA MER1_type 0 230 1 1550 148 70 33 chr1 43946784 43947055 -198717298 - AluJo SINE Alu -9 303 23 1665 152 53 28 chr1 43947072 43947355 -198716998 + AluJo SINE Alu 1 290 -22 2790 152 8 57 chr1 43947356 43947950 -198716403 - L1MB3 LINE L1 -20 6163 5599 2123 114 0 0 chr1 43947950 43948222 -198716131 - AluSx SINE Alu -21 291 20 731 203 9 40 chr1 43948404 43948631 -198715722 - L1M4 LINE L1 -3744 2402 2183 648 204 9 0 chr1 43948634 43948747 -198715606 - FLAM_A SINE Alu -19 123 10 2039 126 40 10 chr1 43948763 43949064 -198715289 - AluSx SINE Alu -2 310 1 2572 51 0 0 chr1 43949075 43949370 -198714983 - AluY SINE Alu -16 295 1 402 195 0 0 chr1 43949755 43949842 -198714511 + CT-rich Low_complexity Low_complexity 1 87 0 2263 103 3 0 chr1 43949842 43950134 -198714219 - AluSx SINE Alu -17 295 3 348 366 96 37 chr1 43950510 43950887 -198713466 - L2 LINE L2 -9 3263 2865 2484 62 0 46 chr1 43950923 43951248 -198713105 + AluY SINE Alu 1 310 -1 355 244 71 8 chr1 43951365 43951413 -198712940 + MER103 DNA DNA 5 49 -117 290 25 0 25 chr1 43951413 43951453 -198712900 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 355 244 71 8 chr1 43951453 43951531 -198712822 + MER103 DNA DNA 49 139 -27 252 306 69 21 chr1 43951856 43952119 -198712234 - L2 LINE L2 -1009 2305 1985 482 294 92 76 chr1 43952273 43952337 -198712016 + L1MC4a LINE L1 5579 5640 -2168 1936 134 29 0 chr1 43952337 43952612 -198711741 + AluSx SINE Alu 19 301 -11 482 294 92 76 chr1 43952612 43952850 -198711503 + L1MC4a LINE L1 5640 5886 -1922 236 213 33 0 chr1 43952893 43952954 -198711399 + L1ME4a LINE L1 5977 6039 -82 353 227 0 34 chr1 43952985 43953073 -198711280 + MIR SINE MIR 81 165 -97 30 27 0 0 chr1 43953179 43953216 -198711137 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr1 43953291 43953324 -198711029 + AT_rich Low_complexity Low_complexity 1 33 0 512 286 34 11 chr1 43953540 43953718 -198710635 + MIR SINE MIR 60 241 -21 262 173 19 0 chr1 43953754 43953806 -198710547 + L2 LINE L2 2925 2977 -336 426 52 0 0 chr1 44054254 44054312 -198610041 - Alu SINE Alu -260 58 1 930 171 0 0 chr1 44054467 44054607 -198609746 + FRAM SINE Alu 1 140 -36 403 202 10 48 chr1 44054720 44054824 -198609529 - MIR SINE MIR 0 262 163 461 238 168 0 chr1 44054852 44054995 -198609358 - MIR SINE MIR -41 221 55 21 36 0 0 chr1 44055003 44055031 -198609322 + AT_rich Low_complexity Low_complexity 1 28 0 4817 157 42 48 chr1 44055545 44056096 -198608257 + L1MB2 LINE L1 4613 5166 -1005 2284 92 7 0 chr1 44056096 44056391 -198607962 + AluSp SINE Alu 1 297 -16 4817 157 42 48 chr1 44056391 44056543 -198607810 + L1MB2 LINE L1 5166 5317 -854 2192 120 3 3 chr1 44056543 44056851 -198607502 + AluY SINE Alu 1 308 -3 4817 157 42 48 chr1 44056851 44057094 -198607259 + L1MB2 LINE L1 5317 5560 -611 2596 77 0 0 chr1 44057094 44057407 -198606946 + AluSq SINE Alu 1 313 0 4817 157 42 48 chr1 44057407 44058026 -198606327 + L1MB2 LINE L1 5560 6170 -1 260 187 67 60 chr1 44058029 44058163 -198606190 - L1MC4 LINE L1 -6 8036 7902 354 80 0 0 chr1 44058163 44058213 -198606140 + (CA)n Simple_repeat Simple_repeat 2 51 0 619 187 53 0 chr1 44058214 44058364 -198605989 - L1MC4 LINE L1 -797 7245 7088 2164 117 13 0 chr1 44058368 44058667 -198605686 - AluSx SINE Alu -8 304 2 268 192 0 55 chr1 44058706 44058779 -198605574 + L1MC4 LINE L1 7830 7898 -144 243 213 107 13 chr1 44059087 44059162 -198605191 - MIR SINE MIR 0 262 181 225 333 108 47 chr1 44059298 44059427 -198604926 - L2 LINE L2 -20 3252 3116 468 279 96 46 chr1 44059431 44059650 -198604703 - MIR SINE MIR -16 246 17 333 296 56 84 chr1 44060155 44060297 -198604056 + MER5B DNA MER1_type 4 141 -37 1042 275 38 14 chr1 44060297 44060664 -198603689 + L1MC4a LINE L1 5511 5886 -1922 26 50 0 0 chr1 44060816 44060856 -198603497 + AT_rich Low_complexity Low_complexity 1 40 0 648 0 0 0 chr1 44060935 44061007 -198603346 + (CA)n Simple_repeat Simple_repeat 2 73 0 411 211 263 0 chr1 44061232 44061346 -198603007 + MER5A DNA MER1_type 46 189 0 2600 46 0 3 chr1 44061486 44061790 -198602563 + AluY SINE Alu 1 303 -8 381 183 0 37 chr1 44061958 44062040 -198602313 + MER103 DNA DNA 2 80 -86 422 294 72 33 chr1 44062140 44062320 -198602033 + MIR SINE MIR 76 262 0 23 68 0 0 chr1 44062431 44062475 -198601878 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 44062789 44062818 -198601535 + AT_rich Low_complexity Low_complexity 1 29 0 1911 122 0 4 chr1 44063252 44063515 -198600838 - AluSx SINE Alu -7 305 44 1353 103 0 0 chr1 44063518 44063693 -198600660 + AluSq SINE Alu 116 290 -23 711 288 81 46 chr1 44063971 44064177 -198600176 + L2 LINE L2 855 1077 -2237 2049 71 71 7 chr1 44064177 44064457 -198599896 - AluSg SINE Alu -12 298 1 711 288 81 46 chr1 44064457 44064573 -198599780 + L2 LINE L2 1077 1188 -2126 1402 163 7 69 chr1 44064592 44064868 -198599485 - AluJo SINE Alu -53 259 1 1119 273 48 51 chr1 44064868 44065301 -198599052 + L2 LINE L2 1272 1703 -1611 836 119 5 139 chr1 44065316 44065510 -198598843 + AluSg/x SINE Alu 138 305 -7 242 364 18 30 chr1 44065515 44065625 -198598728 + L2 LINE L2 1712 1821 -1493 2474 65 0 7 chr1 44065625 44065933 -198598420 - AluY SINE Alu -5 306 1 242 364 18 30 chr1 44065933 44065987 -198598366 + L2 LINE L2 1821 1874 -1440 1035 268 67 121 chr1 44066009 44067365 -198596988 + L2 LINE L2 2036 3313 0 372 293 210 20 chr1 44067492 44067748 -198596605 - L3 LINE CR1 -814 763 441 2006 134 13 16 chr1 44067748 44068053 -198596300 - AluSx SINE Alu -8 304 1 372 293 210 20 chr1 44068053 44068096 -198596257 - L3 LINE CR1 -1136 441 407 400 307 101 28 chr1 44068585 44068675 -198595678 - MIR SINE MIR -10 252 170 1972 138 3 10 chr1 44068675 44068972 -198595381 + AluJb SINE Alu 1 295 -17 400 307 101 28 chr1 44068972 44069099 -198595254 - MIR SINE MIR -92 170 19 525 354 87 0 chr1 44069374 44069569 -198594784 + MIR SINE MIR 37 248 -14 2177 121 0 7 chr1 44069738 44070036 -198594317 + AluSg SINE Alu 1 296 -14 195 344 22 50 chr1 44070841 44071021 -198593332 - L2 LINE L2 -798 2516 2342 776 239 33 0 chr1 44071143 44071327 -198593026 + MER58A DNA MER1_type 35 224 0 284 294 44 75 chr1 44071370 44071530 -198592823 - MIR3 SINE MIR -45 163 9 2176 102 3 25 chr1 44071757 44072071 -198592282 - AluSq SINE Alu -6 307 1 370 191 60 0 chr1 44074222 44074306 -198590047 - L1MD1 LINE L1 -5 6237 6149 389 123 62 25 chr1 44074465 44074546 -198589807 + L1M4 LINE L1 89 172 -6370 842 235 17 22 chr1 44074549 44074728 -198589625 + MER82 DNA MER2_type 468 645 -8 949 174 47 19 chr1 44074735 44074780 -198589573 + L1M4 LINE L1 1194 1236 -5306 1727 153 26 23 chr1 44074780 44075088 -198589265 + AluJb SINE Alu 1 309 -3 949 174 47 19 chr1 44075088 44075255 -198589098 + L1M4 LINE L1 1236 1412 -5130 1844 213 61 5 chr1 44075268 44075710 -198588643 + L1M4 LINE L1 2959 3425 -3219 992 182 0 6 chr1 44075712 44075888 -198588465 - FRAM SINE Alu -1 175 1 2396 196 126 16 chr1 44075890 44076342 -198588011 + L1M4 LINE L1 3418 3977 -2667 2199 119 0 19 chr1 44076342 44076660 -198587693 + AluSq SINE Alu 1 312 -1 2396 196 126 16 chr1 44076660 44076915 -198587438 + L1M4 LINE L1 3977 4203 -2441 2091 112 20 0 chr1 44076915 44077209 -198587144 + AluSx SINE Alu 1 300 -12 1529 195 0 17 chr1 44077326 44077613 -198586740 + AluJb SINE Alu 1 282 -30 2013 100 14 4 chr1 44077632 44077938 -198586415 + AluSx SINE Alu 1 309 0 276 237 104 15 chr1 44078062 44078197 -198586156 + L1ME4a LINE L1 5947 6093 -28 418 231 154 39 chr1 44078416 44078546 -198585807 - MER91A DNA MER1_type -44 152 8 559 221 53 15 chr1 44078897 44079028 -198585325 - L2 LINE L2 -5 3308 3173 205 344 48 40 chr1 44079440 44079565 -198584788 - L2 LINE L2 -10 3262 3137 2015 95 67 7 chr1 44080107 44080392 -198583961 + AluSg SINE Alu 1 302 -8 386 325 82 93 chr1 44080453 44080829 -198583524 + L2 LINE L2 2874 3245 -27 1492 193 3 26 chr1 44080987 44081298 -198583055 + AluJb SINE Alu 1 304 -8 262 328 0 0 chr1 44081568 44081635 -198582718 - L2 LINE L2 -202 3070 3004 2475 80 0 0 chr1 44081761 44082072 -198582281 + AluY SINE Alu 1 311 0 303 252 37 82 chr1 44083879 44084014 -198580339 - MIR SINE MIR -64 144 16 1963 101 124 0 chr1 44084449 44084716 -198579637 - AluSg SINE Alu 0 300 1 326 118 0 66 chr1 44084721 44084797 -198579556 + (T)n Simple_repeat Simple_repeat 1 71 0 1947 118 52 0 chr1 44084983 44085270 -198579083 + AluSq SINE Alu 1 302 -11 248 279 38 0 chr1 44085458 44085537 -198578816 + MARNA DNA Mariner 27 108 -478 2335 97 0 0 chr1 44085572 44085871 -198578482 + AluSx SINE Alu 1 299 -13 2448 65 3 13 chr1 44085871 44086180 -198578173 + AluY SINE Alu 1 307 -4 924 194 6 6 chr1 44086180 44086350 -198578003 + AluSg/x SINE Alu 137 306 -6 185 295 105 21 chr1 44086787 44086882 -198577471 + L2 LINE L2 3133 3235 -37 198 118 0 0 chr1 44087111 44087145 -198577208 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1715 113 4 4 chr1 44087148 44087386 -198576967 - AluSq SINE Alu -21 292 55 25 0 0 0 chr1 44087486 44087511 -198576842 + AT_rich Low_complexity Low_complexity 1 25 0 1922 136 0 0 chr1 44087998 44088277 -198576076 + AluSg SINE Alu 1 279 -31 2080 113 0 4 chr1 44088298 44088573 -198575780 + AluSx SINE Alu 21 294 -18 2173 83 13 23 chr1 44088573 44088872 -198575481 + AluSx SINE Alu 1 297 -15 792 192 15 0 chr1 44088930 44089060 -198575293 - FRAM SINE Alu -44 132 1 1154 199 87 59 chr1 44089073 44089360 -198574993 - AluJo SINE Alu -7 295 1 2466 93 0 0 chr1 44089718 44090028 -198574325 - AluSg SINE Alu 0 310 1 2402 91 3 0 chr1 44090109 44090417 -198573936 + AluSp SINE Alu 2 310 -3 2193 114 0 16 chr1 44090696 44091012 -198573341 - AluSx SINE Alu -1 311 1 2225 97 0 29 chr1 44092201 44092509 -198571844 + AluSx SINE Alu 1 299 -13 1064 240 93 30 chr1 44092601 44092934 -198571419 - MLT1E3 LTR MaLR -1 623 270 1644 162 14 40 chr1 44092990 44093286 -198571067 - AluJo SINE Alu -21 291 4 800 90 0 0 chr1 44093286 44093386 -198570967 + AluSg/x SINE Alu 199 298 -14 418 246 36 36 chr1 44093842 44093980 -198570373 + MLT1J LTR MaLR 374 511 0 788 74 28 9 chr1 44094020 44094128 -198570225 + HY1 scRNA scRNA 2 111 -1 1923 146 0 3 chr1 44094231 44094525 -198569828 - AluSx SINE Alu -19 293 1 295 295 53 11 chr1 44094533 44094628 -198569725 + MIR SINE MIR 53 151 -111 341 251 141 68 chr1 44094841 44095004 -198569349 - MIR SINE MIR -71 191 17 2316 71 34 3 chr1 44095331 44095628 -198568725 - AluSp SINE Alu -7 306 1 21 0 0 0 chr1 44101289 44101310 -198563043 + AT_rich Low_complexity Low_complexity 1 21 0 1110 150 0 0 chr1 44101331 44101498 -198562855 - AluSp SINE Alu -7 306 140 2319 75 3 7 chr1 44102244 44102538 -198561815 - AluSg1 SINE Alu -16 293 1 2222 96 3 0 chr1 44103059 44103352 -198561001 + AluY SINE Alu 1 294 -17 2176 119 3 7 chr1 44103445 44103748 -198560605 + AluSp SINE Alu 1 302 -11 523 246 140 35 chr1 44104283 44104454 -198559899 + MER5A DNA MER1_type 1 189 0 246 281 201 7 chr1 44104497 44104636 -198559717 - MIR SINE MIR -46 216 51 837 172 22 8 chr1 44104944 44105078 -198559275 - AluJo SINE Alu -175 137 2 212 242 182 30 chr1 44105404 44105503 -198558850 - L2 LINE L2 -14 3258 3145 1979 110 4 11 chr1 44105503 44105784 -198558569 + AluSx SINE Alu 1 279 -33 362 295 67 62 chr1 44105794 44105987 -198558366 - L2 LINE L2 -94 3178 2985 797 140 0 0 chr1 44105994 44106108 -198558245 + FAM SINE Alu 22 135 -50 314 321 80 58 chr1 44106114 44106338 -198558015 - L2 LINE L2 -337 2977 2749 2129 130 10 0 chr1 44106359 44106658 -198557695 + AluSx SINE Alu 1 302 -10 2412 82 0 19 chr1 44106786 44107102 -198557251 + AluSg SINE Alu 1 310 0 2240 106 0 3 chr1 44107134 44107436 -198556917 + AluSx SINE Alu 2 302 -10 727 197 169 0 chr1 44107543 44107590 -198556763 - MER3 DNA MER1_type 0 209 171 2173 113 28 0 chr1 44107590 44107881 -198556472 - AluSx SINE Alu -13 299 1 727 197 169 0 chr1 44107881 44108011 -198556342 - MER3 DNA MER1_type -38 171 2 218 298 64 32 chr1 44109087 44109181 -198555172 - MIR SINE MIR -82 180 84 277 271 178 34 chr1 44109333 44109451 -198554902 - MIR SINE MIR -77 185 51 423 0 0 0 chr1 44109531 44109578 -198554775 + (TG)n Simple_repeat Simple_repeat 2 48 0 1498 72 21 16 chr1 44109670 44109863 -198554490 + AluSg/x SINE Alu 100 293 -17 2299 103 0 7 chr1 44109939 44110249 -198554104 - AluSx SINE Alu -3 309 2 1741 143 0 38 chr1 44110260 44110553 -198553800 - AluJo SINE Alu 0 312 31 39 0 0 0 chr1 44110570 44110609 -198553744 + AT_rich Low_complexity Low_complexity 1 39 0 985 168 65 0 chr1 44110615 44110770 -198553583 - FAM SINE Alu -9 166 2 238 299 30 0 chr1 44110847 44110914 -198553439 + MIR SINE MIR 30 98 -164 2478 83 0 0 chr1 44111131 44111432 -198552921 + AluY SINE Alu 1 301 -10 191 305 17 0 chr1 44112391 44112450 -198551903 - L2 LINE L2 -9 3263 3204 2167 134 0 0 chr1 44112537 44112844 -198551509 - AluSx SINE Alu -5 307 1 1710 145 93 0 chr1 44113197 44113466 -198550887 + AluJo SINE Alu 1 294 -18 2297 88 0 3 chr1 44113732 44114037 -198550316 - AluSq SINE Alu -9 304 1 2419 63 0 0 chr1 44114061 44114348 -198550005 - AluY SINE Alu -24 287 1 1709 103 36 75 chr1 44114580 44114861 -198549492 - AluSq SINE Alu -43 270 1 867 181 0 0 chr1 44115072 44115205 -198549148 - FLAM_C SINE Alu 0 133 1 242 179 54 36 chr1 44115339 44115395 -198548958 + L2 LINE L2 2557 2613 -701 1275 243 131 30 chr1 44115434 44116070 -198548283 + L2 LINE L2 2603 3313 0 583 251 137 26 chr1 44116168 44116395 -198547958 - MIR SINE MIR -3 259 8 3328 209 210 5 chr1 44116483 44117600 -198546753 - Charlie2a DNA MER1_type -37 2825 1479 681 262 68 5 chr1 44117678 44117899 -198546454 - Charlie2b DNA MER1_type -2130 652 418 2290 97 0 0 chr1 44119151 44119450 -198544903 + AluSq SINE Alu 1 299 -14 187 27 27 54 chr1 44119581 44119618 -198544735 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 455 89 0 0 chr1 44119624 44119680 -198544673 - AluSc SINE Alu -36 273 218 981 91 0 0 chr1 44119760 44119881 -198544472 - AluSc SINE Alu -106 203 83 1379 177 47 25 chr1 44119894 44120171 -198544182 - AluJo SINE Alu -26 286 4 1846 161 13 10 chr1 44120331 44120636 -198543717 - AluJb SINE Alu -6 306 1 938 184 13 0 chr1 44121627 44121785 -198542568 - AluSg/x SINE Alu -12 300 141 261 174 0 43 chr1 44121786 44121832 -198542521 - Alu SINE Alu -257 44 1 218 261 174 0 chr1 44121883 44121952 -198542401 + L2 LINE L2 3187 3267 -5 2271 94 3 7 chr1 44121975 44122284 -198542069 - AluSc SINE Alu -1 308 1 21 0 0 0 chr1 44122801 44122822 -198541531 + AT_rich Low_complexity Low_complexity 1 21 0 294 272 62 93 chr1 44123592 44123754 -198540599 - MIR SINE MIR -56 206 50 256 246 9 105 chr1 44124279 44124325 -198540028 + MIR SINE MIR 104 153 -109 2211 123 0 7 chr1 44124325 44124635 -198539718 + AluSx SINE Alu 1 308 -4 256 246 9 105 chr1 44124635 44124702 -198539651 + MIR SINE MIR 153 206 -56 250 229 0 200 chr1 44124724 44124869 -198539484 + MIR SINE MIR 72 178 -84 1673 174 10 16 chr1 44124869 44125179 -198539174 + AluJb SINE Alu 1 308 -4 250 229 0 200 chr1 44125179 44125208 -198539145 + MIR SINE MIR 178 211 -51 1303 215 72 0 chr1 44125709 44125988 -198538365 + AluJo SINE Alu 1 299 -13 784 173 148 0 chr1 44125998 44126160 -198538193 - MER5A DNA MER1_type 0 189 4 282 331 0 0 chr1 44126196 44126323 -198538030 + L1MD2 LINE L1 5477 5603 -567 302 253 58 0 chr1 44126331 44126418 -198537935 + L1MD2 LINE L1 5848 5939 -420 259 316 42 21 chr1 44126967 44127037 -198537316 + MIR SINE MIR 30 104 -158 1899 147 10 3 chr1 44127037 44127343 -198537010 - AluJb SINE Alu -4 308 1 259 316 42 21 chr1 44127343 44127367 -198536986 + MIR SINE MIR 104 126 -136 278 103 0 179 chr1 44127412 44127490 -198536863 - L1MB8 LINE L1 0 6178 6115 1557 170 4 18 chr1 44127596 44127936 -198536417 - AluJb SINE Alu 0 345 10 419 286 82 18 chr1 44128282 44128453 -198535900 - MLT1J2 LTR MaLR 0 450 269 282 336 30 37 chr1 44128507 44128641 -198535712 + L2 LINE L2 3171 3303 -10 2368 65 10 0 chr1 44129071 44129377 -198534976 + AluY SINE Alu 1 309 -2 1768 165 14 3 chr1 44129390 44129687 -198534666 + AluJb SINE Alu 1 300 -12 1533 191 0 20 chr1 44129742 44130041 -198534312 - AluJb SINE Alu -19 293 1 392 308 6 35 chr1 44130812 44131054 -198533299 + CT-rich Low_complexity Low_complexity 1 234 0 840 165 0 0 chr1 44131112 44131239 -198533114 + FLAM_C SINE Alu 1 127 -16 1029 178 0 6 chr1 44131332 44131501 -198532852 - FAM SINE Alu -4 171 4 197 267 221 0 chr1 44131978 44132064 -198532289 - L2 LINE L2 -1 3312 3208 22 94 0 0 chr1 44132374 44132438 -198531915 + AT_rich Low_complexity Low_complexity 1 64 0 330 286 0 0 chr1 44133056 44133126 -198531227 + MIR SINE MIR 57 126 -82 1264 183 29 0 chr1 44133151 44133359 -198530994 - MER58A DNA MER1_type -10 214 1 2238 83 7 3 chr1 44133511 44133813 -198530540 + AluSq SINE Alu 1 303 -10 288 0 0 0 chr1 44133813 44133845 -198530508 + (TA)n Simple_repeat Simple_repeat 2 33 0 199 236 36 18 chr1 44134226 44134281 -198530072 - L2 LINE L2 -243 3070 3015 191 289 0 0 chr1 44134341 44134379 -198529974 + MIR SINE MIR 37 74 -134 355 164 151 0 chr1 44134390 44134463 -198529890 + FLAM_A SINE Alu 1 84 -49 204 288 68 0 chr1 44134465 44134524 -198529829 + MIR SINE MIR 76 138 -124 1362 299 128 11 chr1 44134803 44135335 -198529018 - L2 LINE L2 -405 2909 2316 468 260 47 97 chr1 44135348 44135413 -198528940 - LTR67 LTR ERVL -22 535 468 2001 100 0 47 chr1 44135413 44135735 -198528618 + AluSx SINE Alu 1 308 0 2320 101 0 0 chr1 44135745 44136053 -198528300 + AluSq SINE Alu 1 308 -5 468 260 47 97 chr1 44136053 44136354 -198527999 - LTR67 LTR ERVL -98 459 97 954 252 199 3 chr1 44136472 44136789 -198527564 - L2 LINE L2 -986 2328 1950 1591 156 21 103 chr1 44136926 44137305 -198527048 - MER7A DNA MER2_type 0 346 1 2381 69 0 3 chr1 44137358 44137661 -198526692 - AluY SINE Alu -9 302 1 669 228 96 12 chr1 44137661 44137828 -198526525 - MER5A DNA MER1_type -1 188 8 35 0 0 0 chr1 44137919 44137954 -198526399 + AT_rich Low_complexity Low_complexity 1 35 0 2248 89 13 0 chr1 44137962 44138264 -198526089 + AluSx SINE Alu 1 306 -6 2224 8 0 0 chr1 44138614 44138862 -198525491 + AluY SINE Alu 63 310 -1 568 259 139 6 chr1 44138865 44139031 -198525322 - MIR SINE MIR -67 195 8 287 238 57 66 chr1 44139043 44139142 -198525211 - L1ME4a LINE L1 -32 6089 5990 1818 141 35 0 chr1 44139142 44139426 -198524927 + AluJo SINE Alu 1 294 -18 287 238 57 66 chr1 44139426 44139448 -198524905 - L1ME4a LINE L1 -131 5990 5969 319 264 119 62 chr1 44139502 44139610 -198524743 - L1ME4a LINE L1 -67 6054 5954 9731 82 8 14 chr1 44139610 44140696 -198523657 - HSMAR1 DNA Mariner 0 1287 209 2085 112 0 3 chr1 44140696 44140999 -198523354 - AluSx SINE Alu -8 304 3 9731 82 8 14 chr1 44140999 44141207 -198523146 - HSMAR1 DNA Mariner -1078 209 1 319 264 119 62 chr1 44141207 44141291 -198523062 - L1ME4a LINE L1 -167 5954 5851 385 216 184 8 chr1 44141444 44141569 -198522784 + L1ME LINE L1 5511 5657 -464 222 118 0 0 chr1 44142083 44142117 -198522236 + (TA)n Simple_repeat Simple_repeat 1 34 0 267 257 46 46 chr1 44142221 44142330 -198522023 + MIR SINE MIR 34 142 -120 * 320 326 76 28 chr1 44142300 44142444 -198521909 - L2 LINE L2 -1 3271 3121 333 274 20 92 chr1 44142735 44142775 -198521578 + MIR SINE MIR 71 112 -150 675 158 18 0 chr1 44142775 44142917 -198521436 - FLAM_C SINE Alu 0 144 1 333 274 20 92 chr1 44142917 44142962 -198521391 + MIR SINE MIR 112 159 -103 913 164 40 76 chr1 44142962 44143187 -198521166 - MER20 DNA MER1_type -1 218 2 333 274 20 92 chr1 44143187 44143251 -198521102 + MIR SINE MIR 159 212 -50 1878 144 3 7 chr1 44143497 44143795 -198520558 + AluSx SINE Alu 1 297 -15 532 255 104 83 chr1 44143832 44144207 -198520146 - HAL1 LINE L1 -1043 1464 1073 2068 91 9 56 chr1 44144207 44144527 -198519826 - AluSg SINE Alu -5 305 1 532 255 104 83 chr1 44144527 44144680 -198519673 - HAL1 LINE L1 -1434 1073 925 2055 113 0 0 chr1 44144752 44145035 -198519318 + AluSq SINE Alu 8 290 -23 370 211 106 95 chr1 44145040 44145203 -198519150 - L1ME4a LINE L1 -111 6010 5850 1833 158 0 20 chr1 44145203 44145369 -198518984 - AluSx SINE Alu -14 298 130 261 0 0 0 chr1 44145369 44145398 -198518955 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1535 160 14 14 chr1 44145398 44145679 -198518674 - AluSg SINE Alu -28 282 2 1833 158 0 20 chr1 44145679 44145815 -198518538 - AluSx SINE Alu -180 132 1 370 211 106 95 chr1 44145815 44145935 -198518418 - L1ME4a LINE L1 -271 5850 5724 324 310 17 43 chr1 44145955 44146071 -198518282 + L2 LINE L2 3150 3262 -10 228 282 13 0 chr1 44146095 44146173 -198518180 - L1ME4a LINE L1 -455 5666 5588 881 231 104 0 chr1 44146395 44146607 -198517746 + MIR SINE MIR 27 260 -2 23 0 0 0 chr1 44146683 44146706 -198517647 + AT_rich Low_complexity Low_complexity 1 23 0 2105 108 0 0 chr1 44146706 44146992 -198517361 - AluSx SINE Alu -22 290 5 2258 86 0 13 chr1 44147004 44147307 -198517046 - AluSp SINE Alu -14 299 1 1958 143 0 6 chr1 44147330 44147644 -198516709 - AluJb SINE Alu 0 312 1 2175 90 10 0 chr1 44147676 44147966 -198516387 + AluSx SINE Alu 6 298 -14 1703 153 20 7 chr1 44148175 44148469 -198515884 + AluJo SINE Alu 6 303 -9 2529 289 60 29 chr1 44148470 44149699 -198514654 - ERVL LTR ERVL -1142 4622 3313 604 257 45 39 chr1 44149765 44149944 -198514409 - ERVL LTR ERVL -2497 3157 2978 2068 87 3 7 chr1 44150377 44150666 -198513687 + AluY SINE Alu 1 288 -23 2561 45 0 6 chr1 44150726 44151037 -198513316 - AluY SINE Alu -2 309 1 2246 93 0 3 chr1 44152115 44152417 -198511936 - AluSx SINE Alu -11 301 1 514 183 21 0 chr1 44152417 44152510 -198511843 - MER46A DNA MER2_type -140 96 2 21 0 0 0 chr1 44154254 44154275 -198510078 + AT_rich Low_complexity Low_complexity 1 21 0 1594 86 0 5 chr1 44155294 44155516 -198508837 - AluSp SINE Alu -8 305 85 1561 123 0 58 chr1 44155518 44155643 -198508710 - AluSg SINE Alu -64 246 142 1952 137 3 0 chr1 44155643 44155949 -198508404 - AluSx SINE Alu -4 308 2 1561 123 0 58 chr1 44155949 44156084 -198508269 - AluSg SINE Alu -168 142 1 213 244 123 7 chr1 44156594 44156680 -198507673 + MIR SINE MIR 45 137 -71 794 226 92 52 chr1 44156688 44156871 -198507482 - L2 LINE L2 -40 3273 3072 2182 108 10 0 chr1 44156871 44157177 -198507176 - AluSx SINE Alu -3 309 1 794 226 92 52 chr1 44157177 44157298 -198507055 - L2 LINE L2 -241 3072 2957 2807 210 124 4 chr1 44157299 44157995 -198506358 - L2 LINE L2 -497 2817 2039 229 295 90 0 chr1 44158012 44158090 -198506263 - L2 LINE L2 -1544 1770 1686 * 331 309 79 0 chr1 44158073 44158199 -198506154 + MIR SINE MIR 124 259 -3 2392 75 0 3 chr1 44158263 44158569 -198505784 + AluY SINE Alu 1 305 -6 207 0 0 0 chr1 44158801 44158824 -198505529 + (T)n Simple_repeat Simple_repeat 1 23 0 678 262 287 21 chr1 44159010 44159451 -198504902 - L2 LINE L2 -4 3309 2730 213 231 15 15 chr1 44160025 44160090 -198504263 + G-rich Low_complexity Low_complexity 4 68 0 213 349 75 9 chr1 44160314 44160420 -198503933 + L2 LINE L2 3133 3245 -27 183 256 33 67 chr1 44160421 44160511 -198503842 - L2 LINE L2 -15 3257 3171 547 274 83 42 chr1 44162381 44162622 -198501731 - MIR SINE MIR -4 258 8 216 0 0 0 chr1 44163087 44163111 -198501242 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 220 312 86 11 chr1 44163226 44163319 -198501034 - MIR SINE MIR -76 132 33 208 256 12 37 chr1 44163958 44164040 -198500313 + G-rich Low_complexity Low_complexity 2 81 0 193 266 170 78 chr1 44165179 44165333 -198499020 + L2 LINE L2 2984 3165 -148 2260 61 40 0 chr1 44165333 44165629 -198498724 - AluY SINE Alu -2 309 2 193 266 170 78 chr1 44165629 44165692 -198498661 + L2 LINE L2 3165 3221 -92 183 247 134 31 chr1 44165822 44165919 -198498434 - MIR SINE MIR -59 149 43 241 389 24 40 chr1 44167022 44167120 -198497233 + L2 LINE L2 3148 3245 -27 2126 127 0 0 chr1 44167120 44167420 -198496933 - AluSx SINE Alu -12 300 1 241 389 24 40 chr1 44167420 44167447 -198496906 + L2 LINE L2 3245 3271 -1 335 211 46 64 chr1 44168290 44168399 -198495954 - MIR SINE MIR -60 148 42 587 258 42 86 chr1 44168809 44169216 -198495137 + L1MC5 LINE L1 7519 7907 -54 2031 87 22 0 chr1 44169240 44169539 -198494814 + AluSq SINE Alu 2 306 0 38 68 0 0 chr1 44169564 44169637 -198494716 + AT_rich Low_complexity Low_complexity 1 73 0 277 206 16 0 chr1 44169644 44169707 -198494646 + L1MC2 LINE L1 6272 6335 -9 557 165 0 34 chr1 44169907 44170139 -198494214 + (CA)n Simple_repeat Simple_repeat 1 224 0 189 350 52 10 chr1 44170709 44170806 -198493547 - MIR SINE MIR -67 141 41 201 250 0 0 chr1 44171065 44171109 -198493244 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 219 333 13 0 chr1 44173218 44173293 -198491060 - MIR SINE MIR -77 185 110 191 35 0 35 chr1 44173400 44173429 -198490924 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2042 138 0 10 chr1 44173432 44173744 -198490609 - AluSx SINE Alu -3 309 1 328 303 101 34 chr1 44176051 44176259 -198488094 - MIR SINE MIR -6 256 35 21 36 0 0 chr1 44176925 44176953 -198487400 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 44177593 44177618 -198486735 + GC_rich Low_complexity Low_complexity 1 25 0 555 263 43 67 chr1 44178470 44178571 -198485782 + MIR SINE MIR 53 155 -107 180 0 0 0 chr1 44178571 44178591 -198485762 + (TA)n Simple_repeat Simple_repeat 2 21 0 1817 117 46 18 chr1 44178591 44178873 -198485480 - AluSx SINE Alu -21 291 2 555 263 43 67 chr1 44178873 44178979 -198485374 + MIR SINE MIR 153 256 -6 860 238 95 134 chr1 44179473 44179982 -198484371 - MLT1G1 LTR MaLR 0 595 68 2139 83 0 51 chr1 44179982 44180296 -198484057 - AluSg SINE Alu -12 298 1 860 238 95 134 chr1 44180296 44180347 -198484006 - MLT1G1 LTR MaLR -527 68 17 1518 177 9 54 chr1 44180347 44180516 -198483837 - AluJo SINE Alu -10 302 127 195 42 0 0 chr1 44180516 44180540 -198483813 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2177 92 0 0 chr1 44180540 44180822 -198483531 - AluSx SINE Alu -30 282 1 1518 177 9 54 chr1 44180822 44180967 -198483386 - AluJo SINE Alu -183 129 1 860 238 95 134 chr1 44180967 44181024 -198483329 - MLT1G1 LTR MaLR -578 17 1 2210 93 3 3 chr1 44181096 44181398 -198482955 + AluSp SINE Alu 1 302 -11 396 0 0 0 chr1 44181399 44181443 -198482910 + (TA)n Simple_repeat Simple_repeat 1 44 0 609 135 0 0 chr1 44181526 44181615 -198482738 - FRAM SINE Alu -54 122 34 1458 182 36 13 chr1 44181707 44182009 -198482344 + AluJo SINE Alu 1 309 -3 632 146 52 0 chr1 44182023 44182119 -198482234 + AluJ/FLAM SINE Alu 2 102 -210 357 316 83 64 chr1 44182217 44182543 -198481810 + L1M4 LINE L1 4913 5244 -902 191 149 54 0 chr1 44182618 44182692 -198481661 + (TA)n Simple_repeat Simple_repeat 1 78 0 498 270 19 42 chr1 44182769 44182795 -198481558 + L1M4 LINE L1 3548 3573 -2573 2197 94 3 3 chr1 44182795 44183104 -198481249 + AluSq SINE Alu 1 309 -4 498 270 19 42 chr1 44183104 44183292 -198481061 + L1M4 LINE L1 3573 3757 -2389 1868 140 0 0 chr1 44183293 44183565 -198480788 + AluSx SINE Alu 1 272 -40 710 162 0 17 chr1 44183998 44184115 -198480238 - FLAM_A SINE Alu -17 125 11 509 287 46 133 chr1 44184316 44184617 -198479736 + L2 LINE L2 190 515 -2799 1385 153 67 25 chr1 44184617 44184899 -198479454 - AluJo SINE Alu -18 294 1 509 287 46 133 chr1 44184899 44184978 -198479375 + L2 LINE L2 515 599 -2715 2296 87 0 0 chr1 44184978 44185278 -198479075 - AluSg SINE Alu -10 300 1 509 287 46 133 chr1 44185278 44185430 -198478923 + L2 LINE L2 599 763 -2551 1509 157 87 7 chr1 44185430 44185716 -198478637 - AluJo SINE Alu -3 309 1 2081 125 0 3 chr1 44185724 44186036 -198478317 - AluSp SINE Alu -2 311 1 509 287 46 133 chr1 44186036 44186052 -198478301 + L2 LINE L2 770 689 -2625 2335 73 0 10 chr1 44186052 44186365 -198477988 + AluY SINE Alu 1 310 -1 509 287 46 133 chr1 44186365 44186452 -198477901 + L2 LINE L2 688 781 -2533 1025 229 33 65 chr1 44186531 44186837 -198477516 + MLT1H1 LTR MaLR 214 509 -46 3249 242 99 83 chr1 44186837 44187267 -198477086 - L1MD2 LINE L1 -32 7138 6716 2357 78 0 10 chr1 44187267 44187575 -198476778 - AluY SINE Alu -6 305 1 3249 242 99 83 chr1 44187575 44187868 -198476485 - L1MD2 LINE L1 -454 6716 6429 1476 138 0 22 chr1 44187868 44188129 -198476224 - AluJb SINE Alu 0 310 55 667 133 0 0 chr1 44188129 44188219 -198476134 - AluJ/FLAM SINE Alu -221 91 2 2124 119 0 0 chr1 44188229 44188524 -198475829 - AluSx SINE Alu -17 295 1 3249 242 99 83 chr1 44188524 44188674 -198475679 - L1MD2 LINE L1 -749 6421 6275 2035 125 0 0 chr1 44188674 44188971 -198475382 - AluSx SINE Alu -15 297 1 3249 242 99 83 chr1 44188971 44189394 -198474959 - L1MD2 LINE L1 -895 6275 5860 2156 100 3 0 chr1 44189394 44189707 -198474646 + AluSp SINE Alu 1 314 0 3249 242 99 83 chr1 44189707 44190329 -198474024 - L1MD2 LINE L1 -1310 5860 5112 1718 166 0 11 chr1 44190334 44190653 -198473700 - AluJb SINE Alu 0 316 1 545 125 0 0 chr1 44190653 44190733 -198473620 - L1M3 LINE L1 -693 5490 5411 528 290 23 28 chr1 44190732 44190949 -198473404 - L1MD2 LINE L1 -4366 2772 2557 * 372 300 33 33 chr1 44191040 44191190 -198473163 - L1M3d LINE L1 -5738 153 4 1078 277 47 76 chr1 44191209 44191507 -198472846 - L1MD2 LINE L1 -4542 2596 2291 1820 167 0 7 chr1 44191507 44191812 -198472541 - AluSx SINE Alu -9 303 1 1078 277 47 76 chr1 44191812 44191932 -198472421 - L1MD2 LINE L1 -4847 2291 2169 2314 98 0 0 chr1 44191932 44192239 -198472114 - AluSg SINE Alu -3 307 1 1078 277 47 76 chr1 44192239 44192636 -198471717 - L1MD2 LINE L1 -4969 2169 1803 2006 122 0 0 chr1 44192636 44192957 -198471396 + AluSg SINE Alu 1 321 0 1078 277 47 76 chr1 44192957 44193048 -198471305 - L1MD2 LINE L1 -5335 1803 1711 334 255 21 96 chr1 44193902 44194208 -198470145 - L1MD2 LINE L1 -5308 1639 1281 2001 106 3 3 chr1 44194248 44194567 -198469786 - AluSq SINE Alu 0 319 1 983 299 24 45 chr1 44194787 44195249 -198469104 - L1MD2 LINE L1 -5616 1331 880 304 227 141 86 chr1 44195266 44195394 -198468959 - L2 LINE L2 -12 3260 3126 1996 105 27 3 chr1 44195467 44195762 -198468591 + AluSq SINE Alu 1 302 -11 765 203 0 0 chr1 44195906 44196039 -198468314 - FLAM_C SINE Alu 0 133 1 188 179 0 64 chr1 44196048 44196126 -198468227 + T-rich Low_complexity Low_complexity 4 76 0 197 200 60 0 chr1 44196303 44196353 -198468000 - L2 LINE L2 0 3313 3261 396 40 0 0 chr1 44196410 44196460 -198467893 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2017 102 4 0 chr1 44196468 44196742 -198467611 - AluSx SINE Alu -37 275 1 1923 117 10 3 chr1 44196777 44197068 -198467285 - AluY SINE Alu -18 293 1 242 262 16 0 chr1 44197133 44197194 -198467159 - MARNA DNA Mariner -237 349 288 2161 87 0 7 chr1 44197255 44197544 -198466809 - AluSx SINE Alu -24 288 2 2804 144 65 8 chr1 44197566 44198045 -198466308 + MLT2B2 LTR ERVL 10 515 0 22 35 0 0 chr1 44198060 44198089 -198466264 + AT_rich Low_complexity Low_complexity 1 29 0 461 223 33 16 chr1 44198095 44198216 -198466137 - MIR SINE MIR -4 258 136 959 112 0 0 chr1 44198219 44198353 -198466000 - AluJo SINE Alu -178 134 1 337 234 0 0 chr1 44198356 44198420 -198465933 - MIR SINE MIR -62 146 83 216 0 0 0 chr1 44198681 44198705 -198465648 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1763 105 11 15 chr1 44198722 44198989 -198465364 - AluSx SINE Alu -46 266 1 596 246 56 0 chr1 44199320 44199446 -198464907 + MIR SINE MIR 21 153 -109 1105 104 6 0 chr1 44199524 44199687 -198464666 - AluSq SINE Alu -18 295 132 835 278 165 35 chr1 44200125 44200694 -198463659 + L2 LINE L2 2017 2659 -655 1382 181 64 50 chr1 44200706 44200887 -198463466 - MLT1D LTR MaLR -140 365 188 2172 98 10 0 chr1 44200887 44201183 -198463170 - AluSq SINE Alu -14 299 1 1382 181 64 50 chr1 44201183 44201361 -198462992 - MLT1D LTR MaLR -317 188 1 2319 229 30 109 chr1 44201363 44202141 -198462212 - MLT1D-int LTR MaLR -2 1369 654 1355 176 37 7 chr1 44202168 44202331 -198462022 - AluJo SINE Alu -16 296 120 261 0 0 0 chr1 44202331 44202360 -198461993 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1355 176 37 7 chr1 44202360 44202468 -198461885 - AluJo SINE Alu -192 120 17 2275 197 49 68 chr1 44202497 44202757 -198461596 - MLT1D-int LTR MaLR -710 661 398 2057 129 3 0 chr1 44202757 44203068 -198461285 - AluSx SINE Alu 0 312 1 2275 197 49 68 chr1 44203068 44203457 -198460896 - MLT1D-int LTR MaLR -973 398 24 2150 172 26 97 chr1 44203465 44203535 -198460818 - MLT1D LTR MaLR 0 505 432 2331 91 0 0 chr1 44203535 44203843 -198460510 + AluSc SINE Alu 1 308 -1 2150 172 26 97 chr1 44203843 44204308 -198460045 - MLT1D LTR MaLR -73 432 8 315 316 24 60 chr1 44204312 44204562 -198459791 + L2 LINE L2 2656 2896 -418 424 293 93 7 chr1 44204799 44204939 -198459414 + L2 LINE L2 3162 3313 0 425 133 13 0 chr1 44205203 44205278 -198459075 + CT-rich Low_complexity Low_complexity 1 76 0 1581 135 78 11 chr1 44205397 44205678 -198458675 + AluJo SINE Alu 1 300 -12 848 131 7 51 chr1 44205764 44205901 -198458452 - FLAM_C SINE Alu -2 131 1 675 37 0 0 chr1 44206127 44206209 -198458144 + (TTATA)n Simple_repeat Simple_repeat 3 84 0 771 159 30 23 chr1 44206255 44206387 -198457966 - FLAM_C SINE Alu 0 133 1 398 294 51 101 chr1 44206545 44206651 -198457702 - L1ME LINE L1 -403 5718 5608 1797 160 0 0 chr1 44206651 44206939 -198457414 - AluJo SINE Alu -18 294 7 398 294 51 101 chr1 44206939 44207108 -198457245 - L1ME LINE L1 -513 5608 5457 847 169 38 0 chr1 44207130 44207290 -198457063 - FRAM SINE Alu -11 165 1 1625 123 7 67 chr1 44207295 44207486 -198456867 - AluSx SINE Alu 0 324 156 246 32 0 0 chr1 44207486 44207517 -198456836 + (TG)n Simple_repeat Simple_repeat 2 32 0 1625 123 7 67 chr1 44207517 44207649 -198456704 - AluSx SINE Alu -168 156 18 340 258 97 21 chr1 44207661 44207754 -198456599 - L1ME LINE L1 -681 5440 5341 1070 157 0 0 chr1 44207770 44207942 -198456411 - AluSg/x SINE Alu -4 306 135 201 39 0 0 chr1 44208129 44208155 -198456198 + (TG)n Simple_repeat Simple_repeat 1 26 0 870 139 0 0 chr1 44208290 44208419 -198455934 + FLAM_C SINE Alu 1 129 -14 24 32 0 0 chr1 44208419 44208450 -198455903 + AT_rich Low_complexity Low_complexity 1 31 0 359 268 60 66 chr1 44208450 44208633 -198455720 - L1ME LINE L1 -437 5684 5503 1729 118 65 18 chr1 44208688 44208967 -198455386 + AluSx SINE Alu 1 292 -20 1922 119 14 0 chr1 44209041 44209345 -198455008 - AluSx SINE Alu 0 308 1 747 178 113 38 chr1 44209549 44209734 -198454619 - MIR SINE MIR 0 262 64 2131 105 7 7 chr1 44209788 44210094 -198454259 - AluSc SINE Alu -3 306 1 2017 115 10 0 chr1 44211773 44212077 -198452276 - AluSq SINE Alu -6 307 1 900 128 0 0 chr1 44212088 44212213 -198452140 - AluSq/x SINE Alu -187 125 1 536 83 0 0 chr1 44212316 44212388 -198451965 - MER41B LTR ERV1 -85 550 479 21 36 0 0 chr1 44212419 44212447 -198451906 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 44212782 44212807 -198451546 + AT_rich Low_complexity Low_complexity 1 25 0 1578 174 41 3 chr1 44212808 44213102 -198451251 - AluJo SINE Alu -6 306 2 557 247 68 39 chr1 44213374 44213589 -198450764 + MLT1L LTR MaLR 110 394 -200 740 137 21 215 chr1 44213599 44213647 -198450706 - MER5A DNA MER1_type 0 189 133 2009 105 0 4 chr1 44213647 44213924 -198450429 - AluSq SINE Alu -16 297 22 740 137 21 215 chr1 44213924 44214033 -198450320 - MER5A DNA MER1_type -56 133 89 813 165 0 8 chr1 44214033 44214166 -198450187 - FLAM_C SINE Alu -1 132 1 740 137 21 215 chr1 44214166 44214240 -198450113 - MER5A DNA MER1_type -100 89 2 560 228 86 20 chr1 44214249 44214446 -198449907 + MLT1L LTR MaLR 404 613 -2 2206 93 7 7 chr1 44214602 44214912 -198449441 - AluSg SINE Alu 0 310 1 1874 109 0 25 chr1 44215043 44215328 -198449025 - AluSx SINE Alu -3 309 32 241 108 0 0 chr1 44215413 44215450 -198448903 - MADE1 DNA Mariner -12 68 32 7305 119 17 30 chr1 44215682 44215906 -198448447 - L1MA3 LINE L1 0 7724 7499 1565 165 47 7 chr1 44215906 44216185 -198448168 - AluJb SINE Alu -21 291 2 7305 119 17 30 chr1 44216185 44216674 -198447679 - L1MA3 LINE L1 -225 7499 7005 2322 88 0 0 chr1 44216674 44216979 -198447374 - AluY SINE Alu 0 311 7 7305 119 17 30 chr1 44216979 44217505 -198446848 - L1MA3 LINE L1 -719 7005 6474 1768 109 0 8 chr1 44217505 44217762 -198446591 + AluSx SINE Alu 58 312 0 7305 119 17 30 chr1 44217762 44218536 -198445817 - L1MA3 LINE L1 -1250 6474 5735 1916 135 0 3 chr1 44218536 44218838 -198445515 + AluSx SINE Alu 1 301 0 318 128 23 0 chr1 44218846 44218898 -198445455 - Alu SINE Alu -261 41 1 3293 150 30 8 chr1 44218899 44219377 -198444976 - L1MA3 LINE L1 -3396 4169 3703 2136 118 0 0 chr1 44219377 44219674 -198444679 - AluSx SINE Alu -11 301 5 3293 150 30 8 chr1 44219674 44220189 -198444164 - L1MA3 LINE L1 -3862 3703 3158 * 8691 137 25 21 chr1 44220183 44220270 -198444083 + L1M1 LINE L1 129 214 -7351 2485 65 0 0 chr1 44220270 44220578 -198443775 - AluY SINE Alu 0 311 4 2097 118 3 0 chr1 44220581 44220878 -198443475 - AluSx SINE Alu -14 298 1 8691 137 25 21 chr1 44220878 44222132 -198442221 + L1M1 LINE L1 215 1480 -6085 1144 306 47 37 chr1 44222179 44222688 -198441665 - LTR33 LTR ERVL -7 514 1 1264 193 20 16 chr1 44222688 44222993 -198441360 - HAL1 LINE L1 -835 1672 1367 2403 221 70 29 chr1 44223058 44223782 -198440571 + HAL1 LINE L1 1754 2507 0 2676 139 17 5 chr1 44223800 44224204 -198440149 + L1M1 LINE L1 14 422 -7143 758 135 9 0 chr1 44224593 44224704 -198439649 + FLAM_C SINE Alu 11 122 -21 2015 138 0 3 chr1 44224736 44225034 -198439319 + AluJb SINE Alu 1 297 -15 642 181 0 26 chr1 44225471 44225587 -198438766 + FLAM_C SINE Alu 14 126 -17 183 80 0 0 chr1 44225623 44225648 -198438705 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 822 31 0 0 chr1 44225803 44225900 -198438453 + L1PA2 LINE L1 2 98 -6048 * 38326 25 0 0 chr1 44225898 44231145 -198433208 + L1PA2 LINE L1 908 6155 0 2254 86 3 3 chr1 44231168 44231458 -198432895 + AluSc SINE Alu 1 290 -19 956 273 102 13 chr1 44231679 44232053 -198432300 - MLT1I LTR MaLR 0 409 3 1037 231 0 45 chr1 44232054 44232296 -198432057 - MIR SINE MIR -26 236 6 180 0 0 0 chr1 44232548 44232568 -198431785 + (TTG)n Simple_repeat Simple_repeat 2 21 0 611 231 0 0 chr1 44232607 44232715 -198431638 - FLAM_A SINE Alu -33 109 2 265 193 35 18 chr1 44233045 44233102 -198431251 + L2 LINE L2 2678 2735 -579 207 269 0 0 chr1 44233089 44233141 -198431212 + L2 LINE L2 3200 3251 -21 * 231 36 0 0 chr1 44233153 44233181 -198431172 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 533 172 0 10 chr1 44233651 44233750 -198430603 + MIR SINE MIR 164 261 -1 355 274 71 127 chr1 44233926 44234558 -198429795 - L1M2 LINE L1 -5723 1126 530 327 104 0 0 chr1 44234853 44234901 -198429452 + (TG)n Simple_repeat Simple_repeat 1 48 0 2463 75 10 0 chr1 44236218 44236526 -198427827 - AluSq SINE Alu -2 311 1 1855 152 0 32 chr1 44237279 44237594 -198426759 + AluJb SINE Alu 1 305 -7 2102 144 3 52 chr1 44238113 44238398 -198425955 + MER2 DNA MER2_type 1 266 -79 1091 152 6 0 chr1 44238398 44238563 -198425790 - FRAM SINE Alu 0 166 1 2102 144 3 52 chr1 44238563 44238639 -198425714 + MER2 DNA MER2_type 266 344 -1 747 167 9 0 chr1 44238772 44238886 -198425467 - FLAM_C SINE Alu -27 116 2 2210 112 26 0 chr1 44239242 44239547 -198424806 - AluSq SINE Alu 0 313 1 1840 113 109 0 chr1 44239831 44240106 -198424247 - AluSx SINE Alu -6 306 2 2268 90 7 3 chr1 44240805 44241104 -198423249 - AluSx SINE Alu -12 300 1 550 285 79 69 chr1 44241466 44241824 -198422529 - L2 LINE L2 -6 3266 2907 675 144 32 16 chr1 44243028 44243153 -198421200 + L2 LINE L2 3187 3313 0 1025 256 193 7 chr1 44243287 44243728 -198420625 - LTR33A LTR ERVL 0 523 1 1879 155 0 16 chr1 44244166 44244475 -198419878 - AluSx SINE Alu -6 306 3 22 0 0 0 chr1 44245172 44245194 -198419159 + AT_rich Low_complexity Low_complexity 1 22 0 1854 162 13 7 chr1 44247126 44247428 -198416925 - AluJb SINE Alu -8 304 1 315 304 166 0 chr1 44247459 44247640 -198416713 - L1ME4a LINE L1 -201 5920 5710 5700 108 241 96 chr1 44247945 44249428 -198414925 + pTR5 LTR ERV1 741 2438 0 265 218 205 0 chr1 44249604 44249682 -198414671 + L2 LINE L2 3144 3237 -35 420 314 79 0 chr1 44251002 44251142 -198413211 + MIR3 SINE MIR 52 202 -6 1087 142 50 46 chr1 44251246 44251464 -198412889 - MER20 DNA MER1_type 0 219 1 221 0 0 33 chr1 44252060 44252090 -198412263 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2150 104 0 10 chr1 44253093 44253390 -198410963 + AluY SINE Alu 1 294 -17 844 187 139 12 chr1 44253436 44253602 -198410751 + AluJo SINE Alu 114 300 -12 2314 99 3 0 chr1 44253817 44254120 -198410233 - AluSx SINE Alu -8 304 1 393 155 14 0 chr1 44255022 44255093 -198409260 - L1MA9 LINE L1 -18 6294 6223 898 132 0 0 chr1 44255675 44255796 -198408557 + FLAM_C SINE Alu 1 121 -22 207 0 0 0 chr1 44255796 44255819 -198408534 + (TAA)n Simple_repeat Simple_repeat 2 24 0 207 225 0 0 chr1 44255933 44255973 -198408380 - MIR SINE MIR -97 111 72 389 299 145 42 chr1 44256462 44256703 -198407650 + L3 LINE CR1 1310 1575 -2 669 304 75 31 chr1 44257517 44257810 -198406543 - L3 LINE CR1 -24 1553 1248 428 334 112 45 chr1 44257868 44258182 -198406171 - L2 LINE L2 -4 3268 2934 245 298 126 13 chr1 44258349 44258500 -198405853 - L1ME4a LINE L1 -3 6118 5951 180 0 0 0 chr1 44258501 44258521 -198405832 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 871 211 6 19 chr1 44258524 44258685 -198405668 - AluJo SINE Alu -32 280 122 871 178 0 0 chr1 44258948 44259077 -198405276 - FLAM_A SINE Alu -3 130 2 300 369 0 0 chr1 44259117 44259220 -198405133 - L2 LINE L2 -31 3241 3139 851 162 0 0 chr1 44259283 44259400 -198404953 + AluJo SINE Alu 1 117 -185 2067 116 0 47 chr1 44259415 44259735 -198404618 - AluSx SINE Alu -7 305 1 252 143 0 0 chr1 44259737 44259779 -198404574 + (T)n Simple_repeat Simple_repeat 1 42 0 1213 170 5 0 chr1 44259804 44260004 -198404349 + AluJo SINE Alu 109 309 -3 879 159 106 34 chr1 44260045 44260252 -198404101 + L1MC5 LINE L1 7690 7911 -50 568 280 116 72 chr1 44260302 44260984 -198403369 - L2 LINE L2 -206 3066 2339 180 244 58 35 chr1 44261011 44261097 -198403256 - L2 LINE L2 -541 2773 2686 284 303 34 50 chr1 44261131 44261250 -198403103 + L2 LINE L2 3197 3313 0 2395 73 0 13 chr1 44261253 44261566 -198402787 + AluY SINE Alu 1 309 -2 215 192 68 41 chr1 44261588 44261661 -198402692 - L2 LINE L2 -748 2566 2492 1854 164 19 25 chr1 44262474 44262721 -198401632 - L1MA4 LINE L1 -6 6294 6048 1572 109 9 5 chr1 44262721 44262941 -198401412 - AluSg/x SINE Alu -6 304 84 1854 164 19 25 chr1 44262941 44263059 -198401294 - L1MA4 LINE L1 -252 6048 5931 433 39 0 0 chr1 44263064 44263115 -198401238 + L1MA4 LINE L1 5834 5884 -416 2108 126 3 0 chr1 44263499 44263801 -198400552 + AluSx SINE Alu 1 303 -9 403 294 34 0 chr1 44263963 44264082 -198400271 - MIR SINE MIR -93 169 47 1713 184 3 7 chr1 44264092 44264397 -198399956 + AluJo SINE Alu 1 304 -8 1832 137 13 16 chr1 44265482 44265788 -198398565 + AluJo SINE Alu 1 305 -7 1367 160 8 42 chr1 44266575 44266837 -198397516 + L1MB7 LINE L1 5876 6128 -56 1890 156 3 19 chr1 44267478 44267786 -198396567 + AluJo SINE Alu 1 303 -9 29 47 0 0 chr1 44267973 44268016 -198396337 + AT_rich Low_complexity Low_complexity 1 43 0 201 333 65 0 chr1 44268822 44268915 -198395438 + MIR3 SINE MIR 110 208 0 301 229 72 0 chr1 44269581 44269664 -198394689 + MER5A DNA MER1_type 51 139 -50 1652 178 3 14 chr1 44270236 44270523 -198393830 + AluJb SINE Alu 1 284 -28 234 220 0 17 chr1 44270707 44270766 -198393587 + (TA)n Simple_repeat Simple_repeat 1 58 0 696 233 92 62 chr1 44272226 44272626 -198391727 - L1ME4a LINE L1 -218 5903 5492 894 219 103 13 chr1 44274710 44274943 -198389410 + MIR SINE MIR 1 254 -8 327 310 84 84 chr1 44275977 44276190 -198388163 - MIR SINE MIR -2 260 48 581 289 88 54 chr1 44278611 44279368 -198384985 + HAL1b LINE L1 53 835 -513 2460 85 0 13 chr1 44279544 44279860 -198384493 - AluSx SINE Alu 0 312 1 1111 250 157 43 chr1 44280565 44281491 -198382862 + L1MC4 LINE L1 6898 8036 -6 261 98 0 0 chr1 44283158 44283199 -198381154 + (TG)n Simple_repeat Simple_repeat 2 42 0 246 339 17 17 chr1 44283859 44283977 -198380376 - MIR SINE MIR -71 137 20 359 258 247 5 chr1 44284278 44284472 -198379881 + MIR SINE MIR 3 243 -19 455 237 301 0 chr1 44284516 44284778 -198379575 - L2 LINE L2 -6 3307 2967 352 284 142 37 chr1 44284755 44284917 -198379436 - L2 LINE L2 -1035 2279 2101 * 504 316 97 50 chr1 44284916 44284989 -198379364 - L2 LINE L2 -65 3207 3139 1955 137 20 3 chr1 44284989 44285289 -198379064 - AluJo SINE Alu -7 305 1 504 316 97 50 chr1 44285289 44285576 -198378777 - L2 LINE L2 -133 3139 2830 1263 94 128 15 chr1 44286050 44286167 -198378186 + MER30 DNA MER1_type 1 103 -127 1819 123 60 26 chr1 44286167 44286469 -198377884 - AluSx SINE Alu 0 312 1 1263 94 128 15 chr1 44286469 44286554 -198377799 + MER30 DNA MER1_type 103 226 -4 708 303 86 60 chr1 44286558 44287257 -198377096 - L2 LINE L2 -781 2533 1817 2182 59 50 23 chr1 44287336 44287639 -198376714 + AluY SINE Alu 1 311 0 2129 112 10 0 chr1 44287901 44288195 -198376158 + AluSq SINE Alu 2 298 -15 1776 102 0 24 chr1 44288218 44288464 -198375889 + AluSc SINE Alu 21 260 -49 823 108 0 0 chr1 44288473 44288584 -198375769 + AluSc SINE Alu 1 111 -198 336 176 40 0 chr1 44288588 44288662 -198375691 - L1M4 LINE L1 -1449 4697 4621 1343 135 5 5 chr1 44288695 44288902 -198375451 + AluSg/x SINE Alu 103 309 -3 1529 174 33 7 chr1 44288921 44289230 -198375123 + AluJb SINE Alu 1 316 0 260 265 70 94 chr1 44289322 44289481 -198374872 + L1ME3A LINE L1 2236 2386 -3760 2154 119 77 3 chr1 44289481 44289817 -198374536 + MER46B DNA MER2_type 1 236 0 260 265 70 94 chr1 44289817 44289944 -198374409 + L1ME3A LINE L1 2386 2515 -3631 459 100 0 0 chr1 44289981 44290051 -198374302 + (TG)n Simple_repeat Simple_repeat 1 70 0 1689 223 102 53 chr1 44290051 44290073 -198374280 + L1ME3A LINE L1 4624 4643 -1527 2339 101 0 3 chr1 44290073 44290379 -198373974 + AluSg SINE Alu 2 306 -4 1689 223 102 53 chr1 44290379 44290458 -198373895 + L1ME3A LINE L1 4643 4717 -1453 2245 92 3 0 chr1 44290458 44290773 -198373580 + AluSp SINE Alu 1 316 0 1689 223 102 53 chr1 44290773 44291035 -198373318 + L1ME3A LINE L1 4717 4965 -1205 2006 142 0 0 chr1 44291035 44291323 -198373030 + AluSx SINE Alu 1 288 -24 1689 223 102 53 chr1 44291323 44291758 -198372595 + L1ME3A LINE L1 4965 5377 -793 279 0 0 0 chr1 44291758 44291789 -198372564 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1689 223 102 53 chr1 44291789 44292152 -198372201 + L1ME3A LINE L1 5377 5834 -336 250 241 0 0 chr1 44292392 44292450 -198371903 + L1MC5 LINE L1 7301 7358 -603 2240 104 3 3 chr1 44292462 44292760 -198371593 - AluSx SINE Alu -14 298 1 563 252 35 58 chr1 44292802 44293079 -198371274 - L1MC4 LINE L1 -178 7724 7381 263 301 41 20 chr1 44293354 44293500 -198370853 + HERVL LTR ERVL 1189 1337 -4317 851 146 67 67 chr1 44293576 44293740 -198370613 - FRAM SINE Alu -9 167 4 1281 309 70 71 chr1 44293854 44294267 -198370086 + HERVL LTR ERVL 1635 2047 -3717 2014 148 0 16 chr1 44294267 44294584 -198369769 - AluSx SINE Alu 0 312 1 1281 309 70 71 chr1 44294584 44295268 -198369085 + HERVL LTR ERVL 2047 2731 -3033 1359 246 125 57 chr1 44295271 44295518 -198368835 + MLT1G1 LTR MaLR 1 230 -365 1988 112 33 43 chr1 44295518 44295821 -198368532 - AluSq SINE Alu -13 300 1 1359 246 125 57 chr1 44295821 44296085 -198368268 + MLT1G1 LTR MaLR 230 547 -48 434 333 96 16 chr1 44296155 44296404 -198367949 + HERVL LTR ERVL 2885 3153 -2501 1071 223 64 199 chr1 44296595 44296982 -198367371 - HAL1 LINE L1 -1759 748 310 186 43 0 0 chr1 44296982 44297005 -198367348 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2325 65 0 7 chr1 44297010 44297301 -198367052 - AluY SINE Alu -22 289 1 1026 105 0 0 chr1 44297303 44297436 -198366917 - AluSq/x SINE Alu -179 133 1 1071 223 64 199 chr1 44297436 44297769 -198366584 - HAL1 LINE L1 -2202 305 4 311 244 0 13 chr1 44298398 44298476 -198365877 - L1ME3A LINE L1 0 6170 6094 1106 249 48 7 chr1 44298647 44298936 -198365417 - LTR16C LTR ERVL -3 488 188 2399 80 0 0 chr1 44299938 44300227 -198364126 + AluSc SINE Alu 1 289 -20 1066 133 44 28 chr1 44300518 44300699 -198363654 - AluJb SINE Alu -9 303 120 2333 87 3 0 chr1 44300718 44301006 -198363347 - AluSp SINE Alu -24 289 1 566 167 10 0 chr1 44301006 44301102 -198363251 - FLAM_A SINE Alu -3 139 43 1877 115 72 7 chr1 44301192 44301470 -198362883 - AluSx SINE Alu -16 296 1 354 213 0 38 chr1 44301891 44301915 -198362438 - MER116 DNA Mariner -3 77 54 2141 108 14 0 chr1 44301915 44302211 -198362142 - AluSx SINE Alu -12 300 1 354 213 0 38 chr1 44302211 44302266 -198362087 - MER116 DNA Mariner -26 54 1 384 278 74 23 chr1 44302370 44302546 -198361807 - L1ME3A LINE L1 -2012 5796 5612 1018 168 12 0 chr1 44302601 44302762 -198361591 + AluJb SINE Alu 134 296 -16 1869 152 0 10 chr1 44302775 44303064 -198361289 + AluJb SINE Alu 13 298 -14 2146 122 3 0 chr1 44303257 44303552 -198360801 - AluSg SINE Alu -14 296 1 348 85 0 0 chr1 44303555 44303602 -198360751 - Alu SINE Alu -2 300 254 256 260 0 0 chr1 44303631 44303704 -198360649 + HsTC2 DNA Tc2 1824 1896 -2 374 288 77 81 chr1 44303879 44304169 -198360184 - L1ME3A LINE L1 -1117 5029 4740 1641 197 113 3 chr1 44304169 44304524 -198359829 + MSTD LTR MaLR 1 394 -2 374 288 77 81 chr1 44304524 44304918 -198359435 - L1ME3A LINE L1 -1406 4740 4346 2026 151 0 3 chr1 44304918 44305222 -198359131 - AluSg SINE Alu -7 303 1 374 288 77 81 chr1 44305222 44305455 -198358898 - L1ME3A LINE L1 -1800 4346 4114 1900 144 84 29 chr1 44305568 44305772 -198358581 - MLT1A1 LTR MaLR 0 365 133 3595 104 43 8 chr1 44305772 44306260 -198358093 + LTR10B LTR ERV1 1 505 0 1900 144 84 29 chr1 44306260 44306401 -198357952 - MLT1A1 LTR MaLR -232 133 1 400 315 74 21 chr1 44306506 44306836 -198357517 - L1ME3A LINE L1 -2195 3951 3607 1612 173 35 36 chr1 44307462 44307852 -198356501 + MLT1B LTR MaLR 1 466 -1 253 316 88 57 chr1 44307859 44308179 -198356174 - L1M4 LINE L1 -1206 4940 4596 2281 121 0 0 chr1 44308179 44308477 -198355876 - AluSx SINE Alu -14 298 1 253 316 88 57 chr1 44308477 44308679 -198355674 - L1M4 LINE L1 -1550 4596 4402 770 220 85 11 chr1 44308804 44308981 -198355372 + MIR SINE MIR 35 224 -38 449 159 43 116 chr1 44309007 44309074 -198355279 - MLT1A2 LTR MaLR 0 390 335 1993 96 7 4 chr1 44309074 44309382 -198354971 + AluSx SINE Alu 1 309 0 449 159 43 116 chr1 44309382 44309451 -198354902 - MLT1A2 LTR MaLR -55 335 263 464 198 27 54 chr1 44309465 44309576 -198354777 - MLT1A2 LTR MaLR -266 108 1 277 266 87 62 chr1 44309676 44309917 -198354436 + L1ME4a LINE L1 5875 6121 0 300 241 107 134 chr1 44310186 44310626 -198353727 - L1M2 LINE L1 -5982 867 440 191 324 61 68 chr1 44311564 44311712 -198352641 - MIR SINE MIR -57 205 59 564 221 110 66 chr1 44311721 44312095 -198352258 + L1MC4 LINE L1 6774 7146 -815 1978 114 0 47 chr1 44312104 44312426 -198351927 + AluSx SINE Alu 1 308 0 871 270 119 71 chr1 44312467 44313167 -198351186 + L1MC4 LINE L1 7238 7970 -72 2077 92 50 0 chr1 44313251 44313534 -198350819 - AluSg SINE Alu -13 297 1 1127 133 0 48 chr1 44313997 44314185 -198350168 + AluSg/x SINE Alu 133 311 -1 2521 70 3 6 chr1 44314660 44314972 -198349381 - AluY SINE Alu 0 311 1 266 0 29 0 chr1 44315859 44315893 -198348460 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6349 49 1 0 chr1 44315896 44316628 -198347725 - L1PA7 LINE L1 -13 6141 5409 236 178 22 0 chr1 44317481 44317526 -198346827 + (CTCTG)n Simple_repeat Simple_repeat 2 47 0 279 335 52 26 chr1 44318355 44318510 -198345843 - MIR SINE MIR -100 162 4 2175 130 0 10 chr1 44318788 44319095 -198345258 - AluSx SINE Alu -8 304 1 679 287 84 54 chr1 44319106 44319441 -198344912 - MLT1J2 LTR MaLR -105 345 1 244 255 117 0 chr1 44320321 44320415 -198343938 + L1ME LINE L1 5433 5537 -2271 352 290 86 16 chr1 44320433 44320619 -198343734 + L1ME LINE L1 5621 5819 -302 617 235 8 0 chr1 44320628 44320747 -198343606 + FLAM_A SINE Alu 1 120 -22 25 31 0 0 chr1 44320747 44320779 -198343574 + AT_rich Low_complexity Low_complexity 1 32 0 2211 119 0 10 chr1 44320838 44320976 -198343377 + AluSx SINE Alu 1 139 -173 2293 110 0 0 chr1 44320976 44321275 -198343078 + AluSc SINE Alu 1 299 -10 2211 119 0 10 chr1 44321275 44321439 -198342914 + AluSx SINE Alu 139 300 -12 2053 132 7 7 chr1 44321790 44322079 -198342274 + AluJb SINE Alu 3 291 -21 1450 155 117 11 chr1 44322196 44322333 -198342020 - AluJo SINE Alu -20 292 171 291 28 0 0 chr1 44322333 44322369 -198341984 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1450 155 117 11 chr1 44322369 44322495 -198341858 - AluJo SINE Alu -141 171 1 2198 101 24 0 chr1 44324108 44324405 -198339948 - AluSx SINE Alu -8 304 1 1443 187 75 0 chr1 44324429 44324580 -198339773 - AluJo SINE Alu -24 288 150 402 21 0 0 chr1 44324580 44324627 -198339726 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1443 187 75 0 chr1 44324627 44324743 -198339610 - AluJo SINE Alu -162 150 1 844 244 27 36 chr1 44325075 44325208 -198339145 - MER58A DNA MER1_type -2196 224 92 1158 177 9 58 chr1 44325208 44325434 -198338919 - MER20 DNA MER1_type -4 215 1 844 244 27 36 chr1 44325434 44325525 -198338828 - MER58A DNA MER1_type -2328 92 2 408 208 0 28 chr1 44325750 44325856 -198338497 - L1MC5 LINE L1 -216 7745 7643 493 205 87 0 chr1 44326490 44326617 -198337736 + L2 LINE L2 2154 2291 -1023 916 223 45 45 chr1 44326655 44326965 -198337388 + L2 LINE L2 2997 3306 -7 353 206 0 0 chr1 44327182 44327250 -198337103 - AluJ/monomer SINE Alu -1 301 234 1815 156 0 10 chr1 44527262 44527557 -198136796 + AluJb SINE Alu 3 294 -18 208 325 106 16 chr1 44528022 44528145 -198136208 + L2 LINE L2 2781 2914 -400 2293 100 7 0 chr1 44528219 44528519 -198135834 + AluSg SINE Alu 2 303 -7 277 157 72 60 chr1 44529092 44529175 -198135178 + LTR67 LTR ERVL 457 540 -17 183 80 0 0 chr1 44529415 44529440 -198134913 + (TCTCCC)n Simple_repeat Simple_repeat 5 29 0 229 235 0 0 chr1 44530812 44530863 -198133490 + L1 LINE L1 2638 2688 -3458 807 167 24 0 chr1 44530864 44530990 -198133363 - FLAM_A SINE Alu -4 129 1 2223 110 23 0 chr1 44531028 44531328 -198133025 + AluSg SINE Alu 1 307 -3 848 130 45 19 chr1 44531415 44531569 -198132784 - Charlie1 DNA MER1_type -832 1929 1772 1537 122 6 145 chr1 44532219 44532580 -198131773 - AluJb SINE Alu 0 312 1 23 0 0 0 chr1 44532597 44532620 -198131733 + AT_rich Low_complexity Low_complexity 1 23 0 199 288 17 0 chr1 44532939 44532998 -198131355 + L2 LINE L2 3195 3254 -18 365 245 125 59 chr1 44533477 44533664 -198130689 - MIR SINE MIR -6 256 45 2025 193 17 6 chr1 44534545 44534902 -198129451 + MLT1A1 LTR MaLR 5 365 0 569 266 83 63 chr1 44534965 44535360 -198128993 - L1ME4a LINE L1 -1 6514 6112 1068 289 116 30 chr1 44535371 44536171 -198128182 - L2 LINE L2 -4 3309 2420 2137 228 107 10 chr1 44536195 44536804 -198127549 - L1ME4a LINE L1 -1687 4853 4186 1039 269 123 42 chr1 44536801 44537045 -198127308 - L1MDb LINE L1 -4995 1548 1325 * 1802 138 7 56 chr1 44537045 44537350 -198127003 - AluJo SINE Alu -22 290 1 1039 269 123 42 chr1 44537350 44537720 -198126633 - L1MDb LINE L1 -5218 1325 930 253 271 102 76 chr1 44538232 44538457 -198125896 - L1MDb LINE L1 -6193 347 117 2344 232 45 56 chr1 44539377 44540137 -198124216 - L1ME3A LINE L1 -214 5956 5211 1788 155 10 23 chr1 44540137 44540447 -198123906 - AluJo SINE Alu -2 310 5 2344 232 45 56 chr1 44540447 44540532 -198123821 - L1ME3A LINE L1 -959 5211 5127 216 277 36 144 chr1 44540700 44540783 -198123570 + MIR SINE MIR 82 134 -128 1693 118 0 0 chr1 44540783 44541021 -198123332 + L1MA3 LINE L1 6068 6305 0 216 277 36 144 chr1 44541021 44541132 -198123221 + MIR SINE MIR 134 255 -7 273 29 0 0 chr1 44542800 44542834 -198121519 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 552 306 83 55 chr1 44542838 44543223 -198121130 - L2 LINE L2 -9 3304 2909 2261 86 3 23 chr1 44543316 44543618 -198120735 + AluSc SINE Alu 1 296 -13 271 324 27 0 chr1 44543972 44544046 -198120307 + L2 LINE L2 3180 3255 -58 1585 195 0 23 chr1 44544361 44544663 -198119690 - AluJo SINE Alu -17 295 1 1180 175 58 0 chr1 44544736 44544976 -198119377 - L1MB7 LINE L1 -1 6183 5930 217 354 115 18 chr1 44544980 44545206 -198119147 + L2 LINE L2 2593 2840 -474 357 352 82 48 chr1 44545312 44545582 -198118771 + L2 LINE L2 2994 3272 0 322 162 276 0 chr1 44546057 44546162 -198118191 + L1ME4a LINE L1 5970 6103 -18 995 301 93 47 chr1 44547467 44548333 -198116020 - L2 LINE L2 -1 3312 2429 2401 103 0 0 chr1 44549713 44550025 -198114328 - AluSx SINE Alu 0 312 1 447 300 21 14 chr1 44551025 44551165 -198113188 + MIR SINE MIR 4 144 -118 892 244 80 15 chr1 44551172 44551434 -198112919 - MER46C DNA MER2_type -1 337 59 441 178 34 76 chr1 44551483 44551601 -198112752 + MIR SINE MIR 150 262 0 317 301 108 67 chr1 44551625 44552031 -198112322 - L2 LINE L2 -423 2891 2469 204 319 42 42 chr1 44552046 44552212 -198112141 - L2 LINE L2 -1298 2016 1851 853 205 51 79 chr1 44552501 44552629 -198111724 - MER58C DNA MER1_type -2207 213 92 1915 134 10 17 chr1 44552629 44552927 -198111426 - AluSx SINE Alu -16 296 1 853 205 51 79 chr1 44552927 44553013 -198111340 - MER58C DNA MER1_type -2328 92 5 634 237 144 9 chr1 44553074 44553289 -198111064 + HAL1 LINE L1 95 338 -2169 4537 228 106 35 chr1 44553301 44554872 -198109481 + HAL1 LINE L1 825 2506 -1 303 282 14 14 chr1 44554877 44554948 -198109405 - MIR SINE MIR -157 105 35 2162 116 3 0 chr1 44555010 44555304 -198109049 + AluSq SINE Alu 1 295 -18 2653 45 0 6 chr1 44555305 44555618 -198108735 + AluY SINE Alu 1 311 0 4648 83 34 3 chr1 44555808 44556421 -198107932 - L1PA11 LINE L1 -1 6173 5542 3201 138 40 0 chr1 44556421 44556948 -198107405 - L1PA11 LINE L1 -932 5214 4667 438 280 47 10 chr1 44556938 44557131 -198107222 + L1MC5 LINE L1 7576 7775 -186 * 3413 137 32 79 chr1 44557535 44558230 -198106123 + L1MB8 LINE L1 5512 6173 -5 21 36 0 0 chr1 44558402 44558430 -198105923 + AT_rich Low_complexity Low_complexity 1 28 0 607 178 74 80 chr1 44558601 44558719 -198105634 + Charlie8 DNA MER1_type 2 120 -2297 2236 114 3 0 chr1 44558719 44559018 -198105335 + AluSq SINE Alu 1 300 -13 607 178 74 80 chr1 44559018 44559062 -198105291 + Charlie8 DNA MER1_type 120 163 -2254 317 270 0 0 chr1 44559410 44559473 -198104880 + L2 LINE L2 3204 3266 -6 975 266 28 29 chr1 44560066 44560447 -198103906 - L1MC4 LINE L1 -163 7649 7271 479 253 109 53 chr1 44560488 44560648 -198103705 + L1MC4 LINE L1 7741 7891 -151 307 60 40 0 chr1 44560648 44560698 -198103655 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 479 253 109 53 chr1 44560698 44560822 -198103531 + L1MC4 LINE L1 7891 8041 -1 2285 96 0 7 chr1 44561205 44561508 -198102845 + AluSc SINE Alu 1 301 -8 827 141 7 0 chr1 44561604 44561739 -198102614 + FRAM SINE Alu 40 175 -1 2189 85 6 63 chr1 44561904 44562221 -198102132 + AluSp SINE Alu 1 299 -14 369 0 0 0 chr1 44562480 44562521 -198101832 + (CA)n Simple_repeat Simple_repeat 2 42 0 2447 60 7 0 chr1 44562595 44562893 -198101460 + AluY SINE Alu 1 300 -11 225 300 44 22 chr1 44563266 44563356 -198100997 - L2 LINE L2 -466 2848 2757 286 265 15 15 chr1 44563407 44563475 -198100878 + L2 LINE L2 3203 3270 -2 739 165 0 31 chr1 44563569 44563696 -198100657 + FLAM_A SINE Alu 16 138 -4 517 98 0 33 chr1 44563968 44564060 -198100293 + (TCTCC)n Simple_repeat Simple_repeat 2 90 0 193 346 13 0 chr1 44564565 44564643 -198099710 + MIR SINE MIR 176 254 -8 2480 254 47 87 chr1 44564831 44565794 -198098559 - L1M4 LINE L1 -1988 4158 3159 1772 174 0 20 chr1 44565794 44566098 -198098255 - AluJo SINE Alu -13 299 2 2480 254 47 87 chr1 44566098 44566417 -198097936 - L1M4 LINE L1 -2987 3159 2941 1376 38 13 0 chr1 44566417 44566576 -198097777 - L1PA7 LINE L1 0 6154 5994 2480 254 47 87 chr1 44566576 44566791 -198097562 - L1M4 LINE L1 -3205 2941 2719 320 296 99 12 chr1 44567114 44567276 -198097077 + L2 LINE L2 2631 2806 -508 21 36 0 0 chr1 44567818 44567846 -198096507 + AT_rich Low_complexity Low_complexity 1 28 0 205 152 0 0 chr1 44568431 44568464 -198095889 + (CG)n Simple_repeat Simple_repeat 1 33 0 450 65 0 0 chr1 44568464 44568526 -198095827 + (CA)n Simple_repeat Simple_repeat 1 62 0 747 232 50 89 chr1 44568818 44569198 -198095155 + MLT1J2 LTR MaLR 79 443 -7 23 54 0 0 chr1 44569221 44569258 -198095095 + AT_rich Low_complexity Low_complexity 1 37 0 1272 214 28 89 chr1 44569387 44569812 -198094541 + LTR16A LTR ERVL 52 450 0 191 320 0 51 chr1 44570262 44570340 -198094013 - MIR SINE MIR -187 75 2 1057 226 30 64 chr1 44570970 44571266 -198093087 - L1MC4a LINE L1 -1920 5888 5603 216 236 55 42 chr1 44571303 44571468 -198092885 + L2 LINE L2 2035 2201 -1113 1918 131 36 23 chr1 44571965 44572270 -198092083 - AluJo SINE Alu -3 309 1 2629 51 0 3 chr1 44572274 44572585 -198091768 - AluY SINE Alu -1 310 1 379 225 91 109 chr1 44572593 44572922 -198091431 - L1MC5 LINE L1 -31 7930 7608 1438 158 35 50 chr1 44573169 44573486 -198090867 - L1MB7 LINE L1 -177 6007 5696 2292 92 0 3 chr1 44573486 44573780 -198090573 - AluY SINE Alu -18 293 1 2541 192 24 14 chr1 44573780 44574291 -198090062 - Charlie1a DNA MER1_type -587 868 353 429 158 184 0 chr1 44574295 44574371 -198089982 - FLAM_A SINE Alu -19 123 34 994 218 47 26 chr1 44574386 44574620 -198089733 - Charlie1a DNA MER1_type -1112 343 105 2367 101 0 0 chr1 44574784 44575090 -198089263 - AluSg SINE Alu -4 306 1 378 0 0 0 chr1 44575146 44575188 -198089165 + (TG)n Simple_repeat Simple_repeat 1 42 0 1641 175 6 54 chr1 44575195 44575509 -198088844 - AluJo SINE Alu -13 299 1 1822 165 3 7 chr1 44575707 44575992 -198088361 + AluJo SINE Alu 6 289 -23 3107 184 55 87 chr1 44576126 44577049 -198087304 - L1MC4a LINE L1 -729 5449 4560 2143 121 3 3 chr1 44577049 44577347 -198087006 + AluSx SINE Alu 1 298 -14 3107 184 55 87 chr1 44577347 44577464 -198086889 - L1MC4a LINE L1 -1618 4560 4441 201 74 0 0 chr1 44577679 44577706 -198086647 + (TG)n Simple_repeat Simple_repeat 2 28 0 797 288 83 9 chr1 44577777 44578103 -198086250 - L1ME1 LINE L1 -5 6161 5812 1682 155 18 25 chr1 44578126 44578410 -198085943 - AluJo SINE Alu -2 310 29 229 227 120 0 chr1 44578430 44578505 -198085848 - L1ME1 LINE L1 -984 5162 5079 795 307 70 9 chr1 44578724 44579239 -198085114 - L1MB7 LINE L1 -446 5675 5127 1160 191 133 4 chr1 44579308 44579549 -198084804 - AluJb SINE Alu -9 303 32 1969 137 3 10 chr1 44579768 44580061 -198084292 + AluSx SINE Alu 6 296 -16 1684 148 38 14 chr1 44581461 44581752 -198082601 + AluJb SINE Alu 1 298 -14 322 221 105 58 chr1 44581963 44582135 -198082218 + MIR SINE MIR 70 249 -13 2097 107 23 0 chr1 44582138 44582438 -198081915 + AluSq SINE Alu 1 307 -6 532 273 157 42 chr1 44582706 44583252 -198081101 - L1MC4a LINE L1 -303 5818 5255 1377 168 77 42 chr1 44583361 44583647 -198080706 - AluJo SINE Alu -16 296 1 1588 213 93 21 chr1 44583809 44584168 -198080185 - L1ME LINE L1 -389 6586 6190 1282 182 5 132 chr1 44584168 44584586 -198079767 - MLT1A1 LTR MaLR 0 365 1 1588 213 93 21 chr1 44584586 44584654 -198079699 - L1ME LINE L1 -785 6190 6128 579 146 19 10 chr1 44584665 44584768 -198079585 - FLAM_C SINE Alu -7 136 33 2330 193 114 121 chr1 44584769 44585438 -198078915 - L1ME LINE L1 -818 6139 5467 386 159 0 80 chr1 44585438 44585526 -198078827 + AluJb SINE Alu 56 136 -166 1705 174 33 13 chr1 44585532 44585831 -198078522 + AluJb SINE Alu 1 305 -7 2330 193 114 121 chr1 44585831 44586095 -198078258 - L1ME LINE L1 -1495 5462 5119 1432 223 122 57 chr1 44586095 44586374 -198077979 + MER21B LTR ERV1 1 317 -546 2294 94 0 44 chr1 44586374 44586693 -198077660 + AluSx SINE Alu 1 305 -7 1432 223 122 57 chr1 44586693 44586831 -198077522 + MER21B LTR ERV1 317 445 -418 2227 98 0 14 chr1 44586832 44587127 -198077226 - AluSg SINE Alu -19 291 1 1889 150 34 26 chr1 44587145 44587189 -198077164 - L1MB3 LINE L1 -3 6180 6138 2104 120 7 13 chr1 44587189 44587490 -198076863 + AluSx SINE Alu 1 299 -13 2495 84 0 0 chr1 44587493 44587792 -198076561 + AluY SINE Alu 1 299 -12 1889 150 34 26 chr1 44587792 44588123 -198076230 - L1MB3 LINE L1 -46 6137 5798 932 141 14 83 chr1 44588166 44588326 -198076027 - MER7A DNA MER2_type -2693 335 134 1902 162 0 0 chr1 44588326 44588610 -198075743 + AluSx SINE Alu 1 284 -28 932 141 14 83 chr1 44588610 44588736 -198075617 - MER7A DNA MER2_type -2894 134 1 336 204 32 11 chr1 44588743 44588836 -198075517 - L1ME LINE L1 -4305 2833 2739 539 303 28 18 chr1 44588930 44589148 -198075205 - L1ME LINE L1 -4413 2725 2506 452 110 164 0 chr1 44589152 44589225 -198075128 - AluS SINE Alu -214 98 14 1944 126 50 13 chr1 44589234 44589535 -198074818 - AluSx SINE Alu 0 312 1 517 86 0 0 chr1 44589547 44589669 -198074684 - AluY SINE Alu 0 336 215 2144 106 32 0 chr1 44589715 44589999 -198074354 + AluSx SINE Alu 2 294 -18 703 261 141 28 chr1 44590912 44591151 -198073202 - L1MEc LINE L1 -4817 1398 1187 1762 61 37 0 chr1 44591151 44591365 -198072988 - AluSc SINE Alu -16 293 72 703 261 141 28 chr1 44591365 44591742 -198072611 - L1MEc LINE L1 -5028 1187 585 584 342 33 30 chr1 44592165 44592592 -198071761 - L1MEc LINE L1 -5929 467 40 1833 145 0 34 chr1 44592912 44593209 -198071144 - AluJo SINE Alu -25 287 1 507 215 0 0 chr1 44593288 44593409 -198070944 + CT-rich Low_complexity Low_complexity 2 122 0 1416 200 0 88 chr1 44593409 44593749 -198070604 - AluJo SINE Alu -1 311 2 25 0 0 0 chr1 44593758 44593783 -198070570 + AT_rich Low_complexity Low_complexity 1 25 0 2071 70 88 4 chr1 44593900 44594172 -198070181 - AluSc SINE Alu -14 295 1 29 0 0 0 chr1 44594258 44594287 -198070066 + AT_rich Low_complexity Low_complexity 1 29 0 1832 151 38 10 chr1 44594739 44595031 -198069322 + AluJb SINE Alu 1 300 -12 319 188 106 12 chr1 44595193 44595278 -198069075 + MIR SINE MIR 100 192 -70 2040 155 0 3 chr1 44595456 44595765 -198068588 + AluJb SINE Alu 1 308 -4 21 36 0 0 chr1 44596183 44596211 -198068142 + AT_rich Low_complexity Low_complexity 1 28 0 391 284 91 28 chr1 44596242 44596418 -198067935 + MIR SINE MIR 70 256 -6 2648 202 63 20 chr1 44598470 44599070 -198065283 - MLT1E2 LTR MaLR 0 626 1 384 276 81 86 chr1 44599416 44599644 -198064709 + L1MC4a LINE L1 4140 4368 -1778 2003 162 0 16 chr1 44599644 44599959 -198064394 + AluJb SINE Alu 1 310 -2 384 276 81 86 chr1 44599959 44600124 -198064229 + L1MC4a LINE L1 4368 4532 -1614 2189 71 20 34 chr1 44600124 44600418 -198063935 - AluSg SINE Alu -18 292 3 384 276 81 86 chr1 44600418 44600718 -198063635 + L1MC4a LINE L1 4532 4830 -1316 1573 125 7 85 chr1 44600992 44601273 -198063080 + AluJo SINE Alu 40 298 -14 551 311 33 12 chr1 44601343 44601584 -198062769 + L1MC4a LINE L1 5538 5783 -338 1277 263 72 41 chr1 44601599 44602082 -198062271 - LTR33 LTR ERVL -3 518 21 325 219 31 70 chr1 44602090 44602218 -198062135 + L1MC4a LINE L1 5789 5911 -1897 1527 175 9 83 chr1 44602276 44602422 -198061931 + AluJb SINE Alu 1 111 -191 2178 108 0 16 chr1 44602422 44602557 -198061796 + AluY SINE Alu 1 137 -174 2477 57 0 41 chr1 44602557 44602875 -198061478 + AluY SINE Alu 1 305 -6 2178 108 0 16 chr1 44602875 44603044 -198061309 + AluY SINE Alu 137 300 -11 1527 175 9 83 chr1 44603044 44603222 -198061131 + AluJb SINE Alu 111 301 -1 1629 188 83 0 chr1 44603407 44603695 -198060658 + AluJo SINE Alu 1 312 0 1069 228 117 28 chr1 44604256 44604580 -198059773 + L1MC4 LINE L1 5473 5825 -1983 660 194 18 12 chr1 44604710 44604875 -198059478 + L1MC4 LINE L1 6455 6620 -1422 1790 150 48 14 chr1 44604876 44605170 -198059183 + AluJb SINE Alu 3 306 -6 1066 183 0 0 chr1 44605175 44605350 -198059003 + AluJb SINE Alu 112 286 -26 226 274 0 27 chr1 44605350 44605423 -198058930 + L1MC4 LINE L1 6633 6703 -1339 307 343 17 19 chr1 44605429 44605502 -198058851 + L1MC4a LINE L1 6609 6602 -1206 1670 168 21 21 chr1 44605502 44605787 -198058566 - AluJo SINE Alu -23 289 5 307 343 17 19 chr1 44605787 44605886 -198058467 + L1MC4a LINE L1 6601 6699 -1109 625 117 0 0 chr1 44605890 44605984 -198058369 - AluSp/q SINE Alu -6 307 214 306 133 0 0 chr1 44605985 44606030 -198058323 + L1MC4 LINE L1 6775 6819 -1223 2142 126 14 6 chr1 44606031 44606380 -198057973 + L1PA16 LINE L1 5806 6157 -9 881 186 66 45 chr1 44606958 44607360 -198056993 + L1MC4 LINE L1 6806 7198 -844 2077 141 3 0 chr1 44607360 44607658 -198056695 + AluSx SINE Alu 1 299 -13 1860 171 0 13 chr1 44607667 44607971 -198056382 + AluJo SINE Alu 1 300 -12 881 186 66 45 chr1 44607971 44608064 -198056289 + L1MC4 LINE L1 7205 7356 -686 403 207 0 23 chr1 44608067 44608154 -198056199 + L1MD3 LINE L1 7901 7985 -10 1888 160 7 0 chr1 44608309 44608596 -198055757 + AluJb SINE Alu 1 289 -23 25 0 0 0 chr1 44608596 44608621 -198055732 + AT_rich Low_complexity Low_complexity 1 25 0 2067 122 26 0 chr1 44608756 44609060 -198055293 + AluSq SINE Alu 1 312 -1 186 333 54 27 chr1 44609279 44609426 -198054927 + L2 LINE L2 1807 1957 -1357 221 288 30 0 chr1 44609481 44609547 -198054806 + L2 LINE L2 2997 3064 -208 1571 158 0 29 chr1 44609755 44610051 -198054302 + AluJb SINE Alu 21 308 0 201 191 71 0 chr1 44610139 44610181 -198054172 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 2308 117 0 0 chr1 44610342 44610642 -198053711 + AluSx SINE Alu 1 300 -12 2052 145 84 24 chr1 44610669 44610845 -198053508 - MSTB1 LTR MaLR -26 406 242 2395 95 0 0 chr1 44610845 44611140 -198053213 + AluSx SINE Alu 1 295 -17 2052 145 84 24 chr1 44611140 44611342 -198053011 - MSTB1 LTR MaLR -190 242 5 785 301 71 60 chr1 44611349 44612277 -198052076 + L2 LINE L2 2232 3211 -61 2111 115 17 0 chr1 44612354 44612649 -198051704 + AluSq SINE Alu 1 300 -13 2441 81 3 7 chr1 44612650 44612958 -198051395 + AluSp SINE Alu 1 307 -6 1936 154 6 13 chr1 44612979 44613291 -198051062 - AluJo SINE Alu -2 310 1 1605 154 47 111 chr1 44613291 44613496 -198050857 - L1MB8 LINE L1 -346 5832 5615 1923 158 102 11 chr1 44613496 44613858 -198050495 + MSTD LTR MaLR 2 396 0 1605 154 47 111 chr1 44613858 44614009 -198050344 - L1MB8 LINE L1 -563 5615 5456 1477 182 55 7 chr1 44614009 44614284 -198050069 - AluJb SINE Alu -16 296 9 2132 98 0 0 chr1 44614291 44614565 -198049788 - AluSx SINE Alu 0 312 39 1605 154 47 111 chr1 44614565 44614576 -198049777 - L1MB8 LINE L1 -728 5450 5440 2068 117 7 13 chr1 44614576 44614874 -198049479 - AluSq SINE Alu -17 296 1 1605 154 47 111 chr1 44614874 44614985 -198049368 - L1MB8 LINE L1 -738 5440 5395 364 176 56 70 chr1 44614987 44615129 -198049224 + LTR41 LTR ERVL 628 767 -6 2318 121 0 0 chr1 44615266 44615573 -198048780 + AluSx SINE Alu 1 307 -5 23 0 0 0 chr1 44615708 44615731 -198048622 + AT_rich Low_complexity Low_complexity 1 23 0 2544 63 0 0 chr1 44615767 44616067 -198048286 + AluY SINE Alu 4 303 -8 2419 86 0 10 chr1 44616080 44616381 -198047972 + AluSp SINE Alu 1 298 -15 1923 149 3 37 chr1 44616445 44616767 -198047586 + AluJb SINE Alu 1 311 -1 201 326 151 12 chr1 44617193 44617365 -198046988 - L2 LINE L2 -514 2800 2605 358 260 63 24 chr1 44617490 44617617 -198046736 + Charlie7 DNA MER1_type 151 282 -2330 574 72 205 0 chr1 44617701 44617784 -198046569 - U6 snRNA snRNA -5 102 3 861 231 93 84 chr1 44617788 44618238 -198046115 + Charlie7 DNA MER1_type 1465 1918 -694 1085 208 27 18 chr1 44618238 44618459 -198045894 + Charlie1 DNA MER1_type 1 223 -2538 1264 165 10 0 chr1 44618460 44618660 -198045693 - AluJo SINE Alu -25 287 86 2013 144 0 7 chr1 44618663 44618961 -198045392 - AluJb SINE Alu -16 296 1 407 231 58 8 chr1 44618991 44619112 -198045241 + Charlie1 DNA MER1_type 2634 2760 -1 * 566 187 90 13 chr1 44619112 44619265 -198045088 + Charlie7 DNA MER1_type 1913 2077 -535 2055 103 3 58 chr1 44619635 44619946 -198044407 - AluSx SINE Alu -17 295 2 2315 100 0 7 chr1 44619970 44620271 -198044082 - AluSq SINE Alu -14 299 1 1835 153 0 32 chr1 44620417 44620730 -198043623 + AluJb SINE Alu 1 303 -9 294 283 66 51 chr1 44620876 44621056 -198043297 - MIR SINE MIR -48 214 30 406 301 89 78 chr1 44621284 44621826 -198042527 + L2 LINE L2 2721 3266 -6 593 248 144 10 chr1 44622040 44622242 -198042111 - MIR SINE MIR -19 243 15 1242 277 38 30 chr1 44622735 44623128 -198041225 + MLT1I LTR MaLR 2 397 -12 2081 136 0 0 chr1 44623871 44624158 -198040195 + AluSx SINE Alu 1 287 -25 1518 155 52 65 chr1 44624328 44624387 -198039966 + AluJo SINE Alu 1 59 -253 1712 69 9 26 chr1 44624387 44624620 -198039733 - AluSq SINE Alu -10 303 75 1518 155 52 65 chr1 44624620 44624869 -198039484 + AluJo SINE Alu 59 305 -7 35 63 0 0 chr1 44626435 44626498 -198037855 + GC_rich Low_complexity Low_complexity 1 63 0 202 195 0 0 chr1 44626615 44626656 -198037697 + (CGG)n Simple_repeat Simple_repeat 2 42 0 252 86 0 0 chr1 44629447 44629482 -198034871 + (CACG)n Simple_repeat Simple_repeat 1 35 0 1949 88 0 0 chr1 44631011 44631251 -198033102 + AluY SINE Alu 1 240 -71 1505 163 4 8 chr1 44631252 44631504 -198032849 - AluYb8 SINE Alu -67 251 1 3259 194 101 39 chr1 44632017 44632466 -198031887 + Charlie1a DNA MER1_type 1 420 -2341 1722 133 29 57 chr1 44632466 44632782 -198031571 + AluJb SINE Alu 1 307 -5 3259 194 101 39 chr1 44632782 44633034 -198031319 + Charlie1a DNA MER1_type 420 655 -2106 2402 72 7 0 chr1 44633034 44633326 -198031027 + AluSc SINE Alu 1 294 -15 3259 194 101 39 chr1 44633326 44633531 -198030822 + Charlie1a DNA MER1_type 655 965 -490 951 127 146 6 chr1 44633531 44633689 -198030664 + AluJo SINE Alu 2 181 -131 873 175 114 49 chr1 44633740 44633826 -198030527 + Charlie1a DNA MER1_type 958 1037 -1724 1718 177 7 7 chr1 44633826 44634125 -198030228 + AluJb SINE Alu 1 299 -13 873 175 114 49 chr1 44634125 44634230 -198030123 + Charlie1a DNA MER1_type 1037 1134 -1627 2412 63 0 27 chr1 44634230 44634529 -198029824 + AluY SINE Alu 7 297 -14 873 175 114 49 chr1 44634529 44634746 -198029607 + Charlie1a DNA MER1_type 1134 1448 -7 239 273 40 30 chr1 44634746 44634845 -198029508 + MIR SINE MIR 150 249 -13 1660 190 3 23 chr1 44634854 44635164 -198029189 + AluJo SINE Alu 1 304 -8 2043 149 0 0 chr1 44635164 44635466 -198028887 + AluJb SINE Alu 1 302 -10 278 314 105 12 chr1 44635860 44635946 -198028407 - MIR SINE MIR -148 114 21 354 346 160 0 chr1 44638336 44638524 -198025829 + MIR SINE MIR 1 218 -44 432 335 48 35 chr1 44638526 44638842 -198025511 + L1ME3 LINE L1 5549 5868 -302 218 54 0 54 chr1 44638859 44638896 -198025457 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chr1 44638938 44638964 -198025389 + AT_rich Low_complexity Low_complexity 1 26 0 1916 148 3 3 chr1 44638987 44639270 -198025083 + AluJb SINE Alu 3 285 -27 305 314 100 52 chr1 44639272 44639501 -198024852 + L1ME3 LINE L1 5922 6161 -1 193 303 159 20 chr1 44639529 44639724 -198024629 - L2 LINE L2 -1343 1971 1750 521 304 61 6 chr1 44640244 44640425 -198023928 - MIR SINE MIR -66 196 6 242 342 25 0 chr1 44640796 44640875 -198023478 + L2 LINE L2 3145 3225 -47 1587 140 87 19 chr1 44640908 44641204 -198023149 + AluJb SINE Alu 1 314 0 316 161 138 35 chr1 44643265 44643352 -198021001 - L1ME4a LINE L1 -41 6080 5985 905 162 0 0 chr1 44643429 44643565 -198020788 + AluJb SINE Alu 158 293 -19 2142 112 3 10 chr1 44643587 44643881 -198020472 + AluSx SINE Alu 1 292 -20 247 191 0 0 chr1 44643947 44643994 -198020359 - L1MC5 LINE L1 -734 7227 7181 1520 180 40 108 chr1 44643996 44644232 -198020121 - L1MC5 LINE L1 -827 7134 6951 2322 116 3 0 chr1 44644232 44644542 -198019811 - AluSq SINE Alu -2 311 1 1520 180 40 108 chr1 44644542 44644826 -198019527 - L1MC5 LINE L1 -1010 6951 6649 253 289 36 0 chr1 44644876 44644959 -198019394 - L1MC5 LINE L1 -516 7445 7360 1708 166 0 36 chr1 44644961 44645238 -198019115 - AluJo SINE Alu -45 267 1 693 168 37 104 chr1 44645408 44645705 -198018648 - L1MC5 LINE L1 -34 7927 7651 1261 189 5 0 chr1 44645705 44645911 -198018442 - AluJo SINE Alu -21 291 85 524 311 94 78 chr1 44646071 44646530 -198017823 - L1MC4a LINE L1 -1286 6522 6057 1913 221 99 42 chr1 44646535 44646596 -198017757 - L1MC4a LINE L1 -1787 6021 5965 324 0 0 0 chr1 44646596 44646632 -198017721 + (TG)n Simple_repeat Simple_repeat 2 37 0 1913 221 99 42 chr1 44646632 44647286 -198017067 - L1MC4a LINE L1 -1843 5965 5265 183 42 0 0 chr1 44647473 44647497 -198016856 + (TTG)n Simple_repeat Simple_repeat 2 25 0 264 329 51 0 chr1 44647499 44647657 -198016696 - L1MC4a LINE L1 -999 5147 4982 243 0 0 0 chr1 44648966 44648993 -198015360 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1927 105 52 37 chr1 44649318 44649439 -198014914 - L1MA5A LINE L1 -5 6292 6174 2324 101 0 3 chr1 44649439 44649737 -198014616 - AluSx SINE Alu -15 297 1 1927 105 52 37 chr1 44649737 44649940 -198014413 - L1MA5A LINE L1 -123 6174 5963 231 309 134 54 chr1 44651681 44651830 -198012523 - L2 LINE L2 -7 3306 3146 299 242 133 8 chr1 44652445 44652565 -198011788 + MLT1K LTR MaLR 88 222 -366 1901 148 0 24 chr1 44652567 44652905 -198011448 + AluJo SINE Alu 1 331 0 907 193 99 15 chr1 44653037 44653239 -198011114 + MER58A DNA MER1_type 4 222 -2 415 343 129 20 chr1 44653417 44653857 -198010496 + L2 LINE L2 2762 3259 -13 304 299 134 24 chr1 44654468 44654534 -198009819 - L2 LINE L2 -16 3256 3199 2433 99 0 0 chr1 44654534 44654836 -198009517 + AluSx SINE Alu 1 302 -10 304 299 134 24 chr1 44654836 44654896 -198009457 - L2 LINE L2 -73 3199 3116 334 271 68 17 chr1 44654930 44655048 -198009305 - MIR SINE MIR 0 262 139 247 305 165 36 chr1 44655051 44655500 -198008853 - L2 LINE L2 -1382 1932 1426 189 229 0 0 chr1 44655686 44655721 -198008632 + L2 LINE L2 3225 3259 -13 237 172 62 47 chr1 44656105 44656169 -198008184 + L2 LINE L2 2432 2496 -818 810 294 129 31 chr1 44656228 44657011 -198007342 + L2 LINE L2 2450 3307 -6 695 256 168 15 chr1 44657124 44657541 -198006812 + L2 LINE L2 2745 3206 -107 755 252 100 19 chr1 44657542 44657851 -198006502 + MLT1D LTR MaLR 104 437 -68 429 328 66 5 chr1 44658171 44658369 -198005984 + L2 LINE L2 2215 2424 -890 246 278 159 48 chr1 44658882 44659008 -198005345 + L2 LINE L2 3133 3272 0 1850 169 16 3 chr1 44659581 44659888 -198004465 + AluJb SINE Alu 1 311 -1 333 0 0 0 chr1 44659892 44659929 -198004424 + (GAA)n Simple_repeat Simple_repeat 2 38 0 2078 107 82 23 chr1 44660018 44660372 -198003981 - THE1C LTR MaLR 0 375 1 5181 249 149 39 chr1 44660412 44661582 -198002771 + L2 LINE L2 734 1774 -1539 533 271 23 0 chr1 44661582 44661711 -198002642 - MER94 DNA DNA -1 133 2 5181 249 149 39 chr1 44661711 44661994 -198002359 + L2 LINE L2 1774 2024 -1289 2116 140 0 19 chr1 44661994 44662324 -198002029 - AluSx SINE Alu 0 312 1 5181 249 149 39 chr1 44662324 44663207 -198001146 + L2 LINE L2 2024 3310 -3 364 235 12 0 chr1 44663204 44663289 -198001064 + MIR SINE MIR 133 218 -44 * 427 333 0 0 chr1 44663459 44663621 -198000732 + C-rich Low_complexity Low_complexity 1 162 0 358 285 30 12 chr1 44663684 44663849 -198000504 + C-rich Low_complexity Low_complexity 6 173 0 350 363 0 0 chr1 44663887 44664055 -198000298 + C-rich Low_complexity Low_complexity 1 168 0 * 442 217 46 17 chr1 44663966 44664141 -198000212 + (CATCC)n Simple_repeat Simple_repeat 1 180 0 202 206 44 12 chr1 44664169 44664329 -198000024 + (CATCC)n Simple_repeat Simple_repeat 1 165 0 415 298 69 21 chr1 44665577 44665765 -197998588 - MIR SINE MIR -46 216 20 213 338 50 62 chr1 44665954 44666114 -197998239 + L3 LINE CR1 612 769 -808 666 307 40 9 chr1 44666450 44666678 -197997675 + L3 LINE CR1 1219 1453 -124 267 277 101 8 chr1 44667377 44667496 -197996857 - L2 LINE L2 -1294 2020 1891 283 285 88 40 chr1 44667610 44667884 -197996469 - L1ME LINE L1 -272 5849 5563 300 212 0 0 chr1 44668029 44668095 -197996258 - Charlie8 DNA MER1_type -11 2406 2341 534 265 88 6 chr1 44668262 44668432 -197995921 + L2 LINE L2 2208 2391 -923 1197 110 0 0 chr1 44668515 44668679 -197995674 + THE1B LTR MaLR 1 164 -200 2289 99 0 0 chr1 44668680 44668972 -197995381 - AluSg SINE Alu -18 292 1 205 368 0 23 chr1 44668972 44669059 -197995294 + L2 LINE L2 2748 2832 -482 188 309 101 71 chr1 44669161 44669219 -197995134 + L2 LINE L2 2946 3001 -271 1877 153 7 23 chr1 44669219 44669520 -197994833 - AluJb SINE Alu -11 301 6 188 309 101 71 chr1 44669520 44669629 -197994724 + L2 LINE L2 3001 3118 -154 249 330 105 77 chr1 44670119 44670328 -197994025 + L2 LINE L2 3038 3252 -20 2569 50 0 7 chr1 44670504 44670802 -197993551 + AluY SINE Alu 1 296 -15 317 360 17 12 chr1 44670872 44671044 -197993309 + L2 LINE L2 2306 2478 -836 224 333 94 22 chr1 44671136 44671274 -197993079 + L2 LINE L2 2657 2804 -510 327 331 23 8 chr1 44671345 44671478 -197992875 + L2 LINE L2 2965 3099 -173 2306 114 3 0 chr1 44671520 44671826 -197992527 - AluSq SINE Alu -6 307 1 278 284 239 0 chr1 44672666 44672775 -197991578 + L2 LINE L2 3137 3271 -1 1891 158 0 27 chr1 44672899 44673196 -197991157 - AluJb SINE Alu -23 289 1 240 227 247 21 chr1 44673534 44673631 -197990722 - L2 LINE L2 -220 3052 2934 2454 91 3 0 chr1 44673766 44674075 -197990278 - AluSp SINE Alu -3 310 1 27 0 0 0 chr1 44674213 44674240 -197990113 + AT_rich Low_complexity Low_complexity 1 27 0 645 281 55 42 chr1 44674459 44674676 -197989677 - MIR SINE MIR -22 240 21 1767 83 5 0 chr1 44676225 44676443 -197987910 - AluSg/x SINE Alu -11 301 83 191 235 153 47 chr1 44676698 44676783 -197987570 + L2 LINE L2 2176 2269 -1045 218 154 0 0 chr1 44677682 44677721 -197986632 - MIR SINE MIR -125 137 99 587 193 47 20 chr1 44677769 44677887 -197986466 - MER5C DNA MER1_type -5 319 206 2239 101 0 0 chr1 44677887 44678165 -197986188 + AluSx SINE Alu 1 278 -34 1294 57 6 6 chr1 44678165 44678342 -197986011 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 587 193 47 20 chr1 44678342 44678372 -197985981 - MER5C DNA MER1_type -117 207 166 269 224 17 0 chr1 44678405 44678463 -197985890 - AluYb8 SINE Alu -133 175 117 197 203 78 16 chr1 44678463 44678527 -197985826 - MER5C DNA MER1_type -177 147 80 377 245 203 28 chr1 44679349 44679492 -197984861 + MIR SINE MIR 15 182 -80 3297 144 33 70 chr1 44679494 44680169 -197984184 + Ricksha DNA DNA 2604 3181 -79 2198 111 0 22 chr1 44680169 44680485 -197983868 - AluSx SINE Alu -3 309 1 3297 144 33 70 chr1 44680485 44680550 -197983803 + Ricksha DNA DNA 3181 3247 -13 190 176 0 0 chr1 44680586 44680620 -197983733 + L2 LINE L2 3261 3294 -19 275 316 26 9 chr1 44680630 44680744 -197983609 + L2 LINE L2 3159 3274 -39 837 303 138 17 chr1 44680945 44681598 -197982755 - L2 LINE L2 -799 2515 1784 635 315 9 9 chr1 44682306 44682522 -197981831 + MIR SINE MIR 47 262 0 219 358 109 7 chr1 44683222 44683359 -197980994 - L2 LINE L2 -5 3267 3117 21 57 0 0 chr1 44686331 44686366 -197977987 + AT_rich Low_complexity Low_complexity 1 35 0 326 242 53 61 chr1 44686546 44686678 -197977675 + L1M4 LINE L1 4925 5055 -1091 1785 259 33 70 chr1 44686744 44687208 -197977145 + L1MEc LINE L1 940 1355 -5041 2458 82 3 19 chr1 44687208 44687524 -197976829 + AluSq SINE Alu 1 311 -2 1785 259 33 70 chr1 44687524 44687989 -197976364 + L1MEc LINE L1 1355 1835 -4561 5279 149 32 10 chr1 44688006 44688966 -197975387 - L1MB2 LINE L1 -3 6168 5191 24 0 0 0 chr1 44688967 44688991 -197975362 + AT_rich Low_complexity Low_complexity 1 24 0 1319 187 0 0 chr1 44689015 44689218 -197975135 + AluJo SINE Alu 1 203 -109 274 70 0 0 chr1 44689304 44689347 -197975006 - MADE1 DNA Mariner -37 43 1 2967 238 75 23 chr1 44689347 44690511 -197973842 + L1MEc LINE L1 2345 3568 -2647 1934 161 16 0 chr1 44690531 44690835 -197973518 + AluSx SINE Alu 1 309 -3 2362 55 0 51 chr1 44690973 44691284 -197973069 - AluY SINE Alu -16 295 1 319 294 0 0 chr1 44691296 44691364 -197972989 + MER21B LTR ERV1 22 89 -774 3165 195 136 31 chr1 44691369 44692102 -197972251 + MER21B LTR ERV1 43 852 -11 2851 207 44 27 chr1 44692110 44692811 -197971542 + L1MEc LINE L1 3590 4302 -1913 874 179 48 0 chr1 44692815 44692983 -197971370 + L1MEc LINE L1 4840 5015 -1200 2231 99 24 3 chr1 44692995 44693288 -197971065 - AluSc SINE Alu -10 299 1 956 124 62 0 chr1 44693292 44693437 -197970916 - MSTA LTR MaLR -27 401 248 234 163 0 23 chr1 44693436 44693479 -197970874 + MSTA LTR MaLR 387 428 0 * 9298 174 12 1 chr1 44693480 44695006 -197969347 + MSTA-int LTR MaLR 2 1544 -107 2693 33 0 0 chr1 44695008 44695315 -197969038 - MER11C LTR ERVK 0 1071 765 646 167 0 9 chr1 44695317 44695431 -197968922 + MSTA-int LTR MaLR 1539 1651 0 2565 145 7 39 chr1 44695431 44695489 -197968864 + MSTA LTR MaLR 1 59 -369 2000 147 7 0 chr1 44695489 44695796 -197968557 + AluJb SINE Alu 4 312 0 2565 145 7 39 chr1 44695796 44696179 -197968174 + MSTA LTR MaLR 59 428 0 1278 28 0 0 chr1 44697682 44697826 -197966527 - AluY SINE Alu -5 306 163 867 142 0 8 chr1 44698006 44698133 -197966220 - FLAM_C SINE Alu -6 127 2 452 270 53 119 chr1 44698466 44698785 -197965568 + L2 LINE L2 2945 3242 -30 273 276 102 0 chr1 44698881 44698979 -197965374 + MIR SINE MIR 40 147 -61 233 247 14 14 chr1 44699316 44699389 -197964964 + L2 LINE L2 3180 3252 -20 319 288 153 0 chr1 44699662 44699832 -197964521 - MIR SINE MIR -50 212 17 1109 274 87 26 chr1 44701176 44701638 -197962715 - L2 LINE L2 -1219 2095 1596 1604 121 0 0 chr1 44701638 44701861 -197962492 - AluSg/x SINE Alu -5 305 83 1109 274 87 26 chr1 44701861 44701928 -197962425 - L2 LINE L2 -1718 1596 1534 466 277 49 49 chr1 44702153 44702377 -197961976 + MIR SINE MIR 34 257 -5 247 240 192 24 chr1 44704665 44704790 -197959563 + MIR SINE MIR 41 186 -76 1652 135 20 106 chr1 44705487 44705828 -197958525 + AluJb SINE Alu 1 312 0 300 368 0 0 chr1 44706121 44706238 -197958115 - L2 LINE L2 -290 2982 2866 217 143 0 24 chr1 44706301 44706343 -197958010 - L2 LINE L2 -556 2758 2718 245 254 254 21 chr1 44706458 44706647 -197957706 - MIR SINE MIR -5 257 25 7813 194 41 50 chr1 44706713 44708012 -197956341 - L1MD3 LINE L1 -751 5395 4086 1707 149 38 35 chr1 44708012 44708301 -197956052 + AluJb SINE Alu 1 290 -22 7813 194 41 50 chr1 44708301 44709537 -197954816 - L1MD3 LINE L1 -2060 4086 3327 1828 158 33 7 chr1 44709537 44709840 -197954513 - AluJo SINE Alu -1 311 1 7813 194 41 50 chr1 44709840 44710014 -197954339 - L1MD3 LINE L1 -2819 3327 3153 318 350 18 27 chr1 44710014 44710234 -197954119 + L2 LINE L2 2623 2840 -474 388 269 28 19 chr1 44710670 44710778 -197953575 + MER5B DNA MER1_type 4 112 -66 922 198 11 6 chr1 44710896 44711073 -197953280 + MER5B DNA MER1_type 1 178 0 389 314 0 8 chr1 44711704 44711825 -197952528 - L2 LINE L2 -4 3309 3190 332 307 43 14 chr1 44711901 44712041 -197952312 + MIR SINE MIR 32 175 -87 2400 259 95 17 chr1 44712046 44713107 -197951246 - L2 LINE L2 0 3313 2172 213 273 0 0 chr1 44713134 44713178 -197951175 + L2 LINE L2 3214 3257 -15 454 277 206 19 chr1 44713691 44713958 -197950395 + L2 LINE L2 2995 3311 -2 428 310 98 22 chr1 44714351 44714535 -197949818 + L2 LINE L2 301 498 -2816 182 238 0 0 chr1 44714746 44714788 -197949565 + L2 LINE L2 3272 3313 0 287 287 139 16 chr1 44714901 44715030 -197949323 - MIR SINE MIR -103 159 15 2996 201 15 0 chr1 44715288 44715900 -197948453 - L1P LINE L1 -923 5223 4603 1785 134 46 0 chr1 44715896 44716179 -197948174 + L1PA16 LINE L1 5847 6142 -24 * 1484 206 20 49 chr1 44716280 44716432 -197947921 + MER58B DNA MER1_type 2 157 -2263 2212 104 3 0 chr1 44716432 44716720 -197947633 + AluSp SINE Alu 2 290 -23 1484 206 20 49 chr1 44716720 44716916 -197947437 + MER58B DNA MER1_type 157 340 -1 691 265 58 88 chr1 44716924 44717445 -197946908 - L1MEd LINE L1 -5088 1031 527 403 218 117 46 chr1 44717610 44717789 -197946564 + L1MEd LINE L1 1266 1462 -4910 824 162 0 22 chr1 44717789 44717925 -197946428 + FLAM_C SINE Alu 1 133 0 1044 114 0 22 chr1 44717940 44718124 -197946229 + (GGA)n Simple_repeat Simple_repeat 1 180 0 972 98 0 33 chr1 44718124 44718290 -197946063 + (GAA)n Simple_repeat Simple_repeat 1 338 0 972 98 0 33 chr1 44718290 44718474 -197945879 + (GAA)n Simple_repeat Simple_repeat 1 178 0 243 327 71 30 chr1 44718602 44718770 -197945583 - MIR SINE MIR -68 194 20 489 17 0 0 chr1 44719912 44719970 -197944383 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 545 234 53 47 chr1 44720112 44720283 -197944070 - MIR SINE MIR -73 189 18 624 27 0 0 chr1 44721915 44721989 -197942364 + (TG)n Simple_repeat Simple_repeat 2 75 0 279 136 51 68 chr1 44722713 44722772 -197941581 - Charlie8 DNA MER1_type -993 1424 1367 936 228 113 92 chr1 44722801 44722956 -197941397 - Charlie8 DNA MER1_type -1755 662 512 201 74 0 0 chr1 44722956 44722983 -197941370 + (CA)n Simple_repeat Simple_repeat 1 27 0 936 228 113 92 chr1 44722983 44723087 -197941266 - Charlie8 DNA MER1_type -1905 512 412 1516 187 4 15 chr1 44723087 44723355 -197940998 + AluJo SINE Alu 1 265 -47 936 228 113 92 chr1 44723355 44723695 -197940658 - Charlie8 DNA MER1_type -2005 412 49 221 143 24 0 chr1 44723713 44723755 -197940598 + L2 LINE L2 3264 3306 -7 3415 219 128 31 chr1 44725609 44725828 -197938525 - L1MEc LINE L1 -5012 1384 1188 2426 97 7 0 chr1 44725828 44726138 -197938215 - AluSx SINE Alu 0 312 1 1830 154 20 10 chr1 44726139 44726431 -197937922 - AluJo SINE Alu -17 295 1 3415 219 128 31 chr1 44726431 44727380 -197936973 - L1MEc LINE L1 -5207 1189 100 625 341 46 70 chr1 44727486 44727529 -197936824 + L2 LINE L2 2234 2276 -1038 2213 110 0 7 chr1 44727529 44727829 -197936524 - AluSg SINE Alu -12 298 1 625 341 46 70 chr1 44727829 44728398 -197935955 + L2 LINE L2 2276 2828 -486 2245 88 3 0 chr1 44728398 44728732 -197935621 - AluSx SINE Alu 0 335 1 625 341 46 70 chr1 44728732 44728876 -197935477 + L2 LINE L2 2828 2974 -340 1859 160 0 7 chr1 44728878 44729172 -197935181 + AluJb SINE Alu 3 294 -18 184 354 37 0 chr1 44729678 44729760 -197934593 + L2 LINE L2 2829 2913 -400 499 66 0 0 chr1 44729834 44729895 -197934458 + Alu SINE Alu 2 62 -247 1025 276 149 26 chr1 44730290 44730714 -197933639 + L2 LINE L2 2834 3309 -4 226 295 129 81 chr1 44731561 44732043 -197932310 + L2 LINE L2 2358 2862 -452 230 357 114 7 chr1 44732296 44732436 -197931917 - L2 LINE L2 -3 3269 3115 2322 103 3 0 chr1 44733011 44733311 -197931042 - AluSx SINE Alu -11 301 1 484 334 137 48 chr1 44734071 44734532 -197929821 + L3 LINE CR1 1031 1532 -45 335 109 0 3 chr1 44736998 44737219 -197927134 + AluSx SINE Alu 1 294 -7 1106 139 12 17 chr1 44739314 44739487 -197924866 - FAM SINE Alu -3 172 1 316 178 136 51 chr1 44739487 44739595 -197924758 + MER58C DNA MER1_type 74 194 -21 298 205 39 0 chr1 44740663 44740741 -197923612 + L1ME3 LINE L1 6080 6160 -2 1939 127 38 10 chr1 44740913 44741205 -197923148 + AluJb SINE Alu 1 300 -12 337 267 68 41 chr1 44741367 44741513 -197922840 + MIR SINE MIR 100 249 -13 2074 155 0 3 chr1 44741630 44741939 -197922414 + AluJb SINE Alu 1 308 -4 21 36 0 0 chr1 44742357 44742385 -197921968 + AT_rich Low_complexity Low_complexity 1 28 0 432 304 159 24 chr1 44742385 44742592 -197921761 + MIR SINE MIR 22 256 -6 298 205 39 0 chr1 44745135 44745213 -197919140 + L1ME3 LINE L1 6080 6160 -2 2430 83 0 17 chr1 44745385 44745687 -197918666 + AluSx SINE Alu 1 297 -15 964 152 0 84 chr1 44745688 44745879 -197918474 + AluSg/x SINE Alu 137 311 -1 368 305 141 34 chr1 44745882 44746059 -197918294 + L1ME4a LINE L1 5879 6074 -47 2360 93 7 0 chr1 44746237 44746537 -197917816 - AluY SINE Alu -9 302 1 554 264 175 48 chr1 44747030 44747492 -197916861 + L2 LINE L2 2440 2960 -354 2214 105 3 0 chr1 44747507 44747801 -197916552 - AluY SINE Alu -16 295 1 210 372 53 18 chr1 44747819 44747932 -197916421 + L2 LINE L2 3125 3241 -31 291 184 0 0 chr1 44749393 44749442 -197914911 - L2 LINE L2 -3 3310 3262 1532 161 96 4 chr1 44749780 44750041 -197914312 + AluJb SINE Alu 1 285 -27 272 242 98 15 chr1 44750122 44750254 -197914099 - Charlie7 DNA MER1_type -38 2574 2432 1884 202 69 23 chr1 44751083 44751564 -197912789 + MLT1D LTR MaLR 3 505 0 214 389 76 16 chr1 44752167 44752352 -197912001 - L3 LINE CR1 -469 1108 913 526 177 0 18 chr1 44753021 44753134 -197911219 + L1MB3 LINE L1 6072 6182 -1 2017 154 7 0 chr1 44753138 44753436 -197910917 + AluJb SINE Alu 1 300 -12 313 252 135 18 chr1 44754178 44754289 -197910064 - L1ME4a LINE L1 -7 6114 5991 590 253 53 69 chr1 44754379 44754654 -197909699 + L1MC5 LINE L1 7430 7699 -262 2374 105 3 0 chr1 44754654 44754960 -197909393 - AluSx SINE Alu -5 307 1 590 253 53 69 chr1 44754960 44755044 -197909309 + L1MC5 LINE L1 7699 7783 -178 1132 170 68 4 chr1 44755045 44755310 -197909043 + L1MA4 LINE L1 6016 6297 -3 2298 94 0 0 chr1 44755405 44755693 -197908660 + AluSg1 SINE Alu 1 288 -21 779 255 0 0 chr1 44755727 44755880 -197908473 - AluJb SINE Alu -23 289 137 2210 108 6 29 chr1 44755917 44756233 -197908120 - AluSq SINE Alu -4 309 1 2083 92 31 20 chr1 44757215 44757507 -197906846 + AluSg SINE Alu 1 295 -15 1871 164 0 3 chr1 44757788 44758080 -197906273 + AluJb SINE Alu 8 298 -14 2612 65 0 0 chr1 44759230 44759537 -197904816 + AluY SINE Alu 1 307 -4 2265 105 3 3 chr1 44759537 44759832 -197904521 + AluSg SINE Alu 1 295 -15 451 295 150 5 chr1 44760581 44760794 -197903559 + MIR3 SINE MIR 3 247 -15 561 207 39 45 chr1 44760892 44761019 -197903334 + L1MA8 LINE L1 6112 6239 -52 1539 174 47 44 chr1 44761019 44761163 -197903190 + AluJo SINE Alu 1 143 -169 2343 95 3 3 chr1 44761163 44761467 -197902886 + AluSc SINE Alu 1 304 -5 1539 174 47 44 chr1 44761467 44761620 -197902733 + AluJo SINE Alu 143 299 -13 561 207 39 45 chr1 44761620 44761671 -197902682 + L1MA8 LINE L1 6239 6289 -2 2201 108 0 26 chr1 44762068 44762374 -197901979 + AluSx SINE Alu 2 299 -13 503 307 85 0 chr1 44763033 44763222 -197901131 + MIR SINE MIR 46 250 -12 2524 65 7 0 chr1 44763599 44763906 -197900447 + AluY SINE Alu 1 309 -2 217 346 69 0 chr1 44765110 44765211 -197899142 + MIR SINE MIR 36 143 -65 273 272 110 52 chr1 44765601 44765737 -197898616 + MIR3 SINE MIR 63 206 -2 228 229 0 21 chr1 44766537 44766585 -197897768 - L2 LINE L2 0 3313 3267 1195 68 14 0 chr1 44767592 44767739 -197896614 - AluSq/x SINE Alu -164 149 1 272 341 68 56 chr1 44767822 44768071 -197896282 + L2 LINE L2 2965 3216 -56 2050 136 0 32 chr1 44768090 44768400 -197895953 + AluJo SINE Alu 1 300 -12 2266 103 0 0 chr1 44769396 44769696 -197894657 - AluSg1 SINE Alu -9 300 1 1801 160 13 29 chr1 44769824 44770131 -197894222 + AluJo SINE Alu 1 302 -10 2371 90 10 13 chr1 44770385 44770697 -197893656 - AluY SINE Alu 0 311 1 2422 93 3 3 chr1 44770749 44771060 -197893293 + AluSp SINE Alu 1 311 -2 211 271 0 0 chr1 44771502 44771550 -197892803 - L2 LINE L2 0 3313 3266 214 290 48 0 chr1 44771618 44771680 -197892673 + MER91 DNA MER1_type 46 110 -80 1950 127 3 29 chr1 44772405 44772712 -197891641 + AluSx SINE Alu 1 299 -13 1625 196 14 4 chr1 44772733 44773009 -197891344 - AluJo SINE Alu -33 279 1 24 0 0 0 chr1 44773041 44773065 -197891288 + AT_rich Low_complexity Low_complexity 1 24 0 895 161 44 0 chr1 44773084 44773221 -197891132 + AluJb SINE Alu 1 143 -169 2110 120 3 0 chr1 44773222 44773521 -197890832 + AluY SINE Alu 1 300 -11 2283 97 7 7 chr1 44773653 44773952 -197890401 + AluSx SINE Alu 1 299 -13 1680 84 35 9 chr1 44774058 44774284 -197890069 + AluSg/x SINE Alu 80 311 -1 2446 87 0 0 chr1 44774523 44774822 -197889531 + AluSc SINE Alu 1 299 -10 1381 167 84 24 chr1 44774836 44775087 -197889266 + AluJb SINE Alu 1 266 -46 1563 66 10 20 chr1 44775094 44775292 -197889061 + AluSq SINE Alu 101 296 -17 2327 117 0 0 chr1 44775386 44775694 -197888659 + AluSx SINE Alu 1 308 -4 2243 110 7 0 chr1 44776873 44777172 -197887181 + AluSq SINE Alu 1 301 -12 354 23 0 0 chr1 44777282 44777325 -197887028 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 143 0 0 chr1 44777538 44777573 -197886780 + (A)n Simple_repeat Simple_repeat 1 35 0 28 0 0 0 chr1 44778906 44778934 -197885419 + AT_rich Low_complexity Low_complexity 1 28 0 2458 89 0 6 chr1 44779039 44779354 -197884999 + AluSq SINE Alu 1 313 0 879 125 0 0 chr1 44779378 44779498 -197884855 + FLAM_C SINE Alu 5 124 -9 365 74 0 19 chr1 44779836 44779890 -197884463 + Alu SINE Alu 1 53 -250 185 272 163 43 chr1 44780580 44780672 -197883681 - MIR SINE MIR -38 224 122 274 247 0 37 chr1 44780753 44780834 -197883519 - MER69 DNA AcHobo 0 2526 2449 * 571 148 0 0 chr1 44780829 44780917 -197883436 - MER69 DNA AcHobo -1079 147 60 266 224 104 15 chr1 44780935 44781002 -197883351 + L2 LINE L2 3184 3256 -16 650 305 63 8 chr1 44781131 44781370 -197882983 + MIR SINE MIR 8 259 -3 330 263 30 10 chr1 44782309 44782408 -197881945 - MER81 DNA DNA -1 113 13 2475 58 7 19 chr1 44782486 44782796 -197881557 + AluSp SINE Alu 1 306 -7 193 287 138 0 chr1 44783112 44783199 -197881154 + MIR SINE MIR 105 203 -59 436 284 134 75 chr1 44783422 44783742 -197880611 - LTR67 LTR ERVL -79 478 140 2194 66 51 11 chr1 44783810 44784119 -197880234 - AluSq SINE Alu 0 320 1 479 262 12 76 chr1 44784148 44784257 -197880096 + L1ME3A LINE L1 5940 6036 -134 2301 101 7 0 chr1 44784257 44784555 -197879798 - AluSq SINE Alu -12 301 2 479 262 12 76 chr1 44784555 44784617 -197879736 + L1ME3A LINE L1 6036 6100 -70 342 0 0 0 chr1 44784633 44784671 -197879682 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 2089 117 7 10 chr1 44784671 44784961 -197879392 - AluSx SINE Alu -23 289 1 2151 115 17 0 chr1 44784962 44785257 -197879096 - AluSq SINE Alu -13 300 1 847 304 139 55 chr1 44785301 44786262 -197878091 - L2 LINE L2 -2 3270 2232 1946 145 84 24 chr1 44786269 44786471 -197877882 + MSTB1 LTR MaLR 5 193 -239 2421 95 0 0 chr1 44786471 44786766 -197877587 - AluSx SINE Alu -17 295 1 1946 145 84 24 chr1 44786766 44786942 -197877411 + MSTB1 LTR MaLR 193 406 -26 2334 117 0 0 chr1 44786969 44787269 -197877084 - AluSx SINE Alu -12 300 1 201 191 71 0 chr1 44787430 44787472 -197876881 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 1590 161 0 29 chr1 44787560 44787856 -197876497 - AluJb SINE Alu 0 308 21 226 288 30 0 chr1 44788064 44788130 -197876223 - L2 LINE L2 -208 3064 2997 222 351 48 24 chr1 44788164 44788332 -197876021 - L2 LINE L2 -1336 1978 1807 2101 122 26 0 chr1 44788551 44788855 -197875498 - AluSq SINE Alu -1 312 1 25 0 0 0 chr1 44788990 44789015 -197875338 + AT_rich Low_complexity Low_complexity 1 25 0 1924 160 7 0 chr1 44789015 44789302 -197875051 - AluJb SINE Alu -23 289 1 306 295 90 57 chr1 44789310 44789432 -197874921 - L1ME4a LINE L1 -234 5887 5762 380 237 0 21 chr1 44789457 44789554 -197874799 - L1MD3 LINE L1 -10 7985 7891 * 1903 190 132 16 chr1 44789547 44789628 -197874725 - L1MC4 LINE L1 -686 7356 7286 1870 180 0 13 chr1 44789628 44789944 -197874409 - AluJo SINE Alu 0 312 1 2075 141 3 3 chr1 44789953 44790252 -197874101 - AluSx SINE Alu -13 299 1 1903 190 132 16 chr1 44790252 44790654 -197873699 - L1MC4 LINE L1 -763 7279 6806 2028 126 14 6 chr1 44791233 44791582 -197872771 - L1PA16 LINE L1 -9 6157 5806 292 133 0 0 chr1 44791583 44791628 -197872725 - L1MC4 LINE L1 -1223 6819 6775 597 117 0 0 chr1 44791629 44791723 -197872630 + AluSp/q SINE Alu 214 307 -6 308 353 23 40 chr1 44791727 44791826 -197872527 - L1MC4 LINE L1 -1258 6784 6688 1710 168 21 21 chr1 44791826 44792111 -197872242 + AluJo SINE Alu 5 289 -23 308 353 23 40 chr1 44792111 44792184 -197872169 - L1MC4 LINE L1 -1354 6688 6615 264 200 0 0 chr1 44792184 44792239 -197872114 + (CA)n Simple_repeat Simple_repeat 2 56 0 1086 202 0 0 chr1 44792245 44792438 -197871915 - AluJb SINE Alu -8 304 112 1821 152 47 14 chr1 44792440 44792737 -197871616 - AluJb SINE Alu -3 309 3 610 194 18 12 chr1 44792738 44792903 -197871450 - L1MC4 LINE L1 -1422 6620 6455 1001 228 117 28 chr1 44793033 44793357 -197870996 - L1MC4 LINE L1 -1983 5825 5473 1665 188 83 0 chr1 44793918 44794206 -197870147 - AluJo SINE Alu 0 312 1 1459 179 9 83 chr1 44794391 44794569 -197869784 - AluJb SINE Alu -1 301 156 2207 108 0 16 chr1 44794569 44794738 -197869615 - AluY SINE Alu -11 300 137 2499 57 0 41 chr1 44794738 44795056 -197869297 - AluY SINE Alu -6 305 1 2207 108 0 16 chr1 44795056 44795191 -197869162 - AluY SINE Alu -174 137 1 1459 179 9 83 chr1 44795191 44795337 -197869016 - AluJb SINE Alu -146 156 1 306 219 31 70 chr1 44795395 44795523 -197868830 - L1MC4a LINE L1 -1897 5911 5789 1268 292 54 23 chr1 44795531 44796014 -197868339 + LTR33 LTR ERVL 21 518 -3 529 315 33 12 chr1 44796029 44796270 -197868083 - L1MC4a LINE L1 -338 5783 5538 1612 132 7 78 chr1 44796340 44796621 -197867732 - AluJo SINE Alu -12 300 40 396 298 86 20 chr1 44796895 44797187 -197867166 - L1MC4a LINE L1 -1316 4830 4520 381 21 0 0 chr1 44797195 44797242 -197867111 + AluY SINE Alu 3 49 -251 878 118 8 0 chr1 44797342 44797461 -197866892 - AluSq/x SINE Alu -192 120 1 2523 80 0 0 chr1 44797469 44797768 -197866585 - AluSc SINE Alu -10 299 1 371 258 0 0 chr1 44797768 44797861 -197866492 + L2 LINE L2 2688 2780 -534 1036 129 71 0 chr1 44797864 44798019 -197866334 - AluSg/x SINE Alu -13 299 134 2178 112 0 10 chr1 44798019 44798314 -197866039 - AluSx SINE Alu -20 292 1 605 198 51 19 chr1 44798476 44798633 -197865720 + L2 LINE L2 3152 3313 0 341 284 20 10 chr1 44798635 44798737 -197865616 - MIR SINE MIR -64 198 96 1835 164 6 26 chr1 44798780 44799091 -197865262 + AluJb SINE Alu 1 305 -7 2390 92 3 0 chr1 44799502 44799797 -197864556 + AluSx SINE Alu 1 296 -16 2104 110 41 3 chr1 44799946 44800236 -197864117 + AluSx SINE Alu 1 301 -11 189 0 0 0 chr1 44800448 44800469 -197863884 + (TA)n Simple_repeat Simple_repeat 2 22 0 5899 23 3 0 chr1 44800469 44801171 -197863182 - L1PA5 LINE L1 -9 6145 5442 782 285 118 29 chr1 44801237 44801296 -197863057 + L2 LINE L2 2297 2349 -965 2274 95 3 3 chr1 44801296 44801592 -197862761 + AluSx SINE Alu 1 296 -16 782 285 118 29 chr1 44801592 44801915 -197862438 + L2 LINE L2 2349 2713 -601 1447 151 0 5 chr1 44801916 44802134 -197862219 + AluJb SINE Alu 85 301 -11 2240 105 10 3 chr1 44802591 44802887 -197861466 + AluSx SINE Alu 1 298 -14 356 200 75 0 chr1 44802887 44802967 -197861386 + L2 LINE L2 3211 3296 -17 487 304 79 21 chr1 44803024 44803264 -197861089 + MIR SINE MIR 9 262 0 807 190 0 60 chr1 44803490 44803619 -197860734 - FAM SINE Alu -138 173 57 1749 104 148 0 chr1 44803619 44803889 -197860464 - AluSq SINE Alu -3 310 1 807 190 0 60 chr1 44803889 44803943 -197860410 - FAM SINE Alu -254 57 1 2195 112 0 16 chr1 44803948 44804253 -197860100 - AluSx SINE Alu -12 300 1 342 278 158 0 chr1 44804552 44804685 -197859668 - L2 LINE L2 -3 3269 3116 294 283 226 0 chr1 44805076 44805182 -197859171 - MER5A DNA MER1_type 0 189 60 312 217 0 43 chr1 44805213 44805231 -197859122 - MER5A DNA MER1_type -97 92 75 2320 92 10 10 chr1 44805231 44805536 -197858817 - AluSx SINE Alu -7 305 1 312 217 0 43 chr1 44805536 44805586 -197858767 - MER5A DNA MER1_type -114 75 27 520 261 128 23 chr1 44805634 44805891 -197858462 - L1MC/D LINE L1 -383 5738 5453 1643 136 12 0 chr1 44805904 44806161 -197858192 + MER2 DNA MER2_type 1 260 -85 337 337 0 20 chr1 44806165 44806263 -197858090 + L1MC4 LINE L1 6608 6703 -1339 * 355 307 23 0 chr1 44806221 44806309 -197858044 - L1MC4 LINE L1 -1339 6703 6614 210 71 0 0 chr1 44806326 44806354 -197857999 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 297 0 0 0 chr1 44806353 44806386 -197857967 + (TA)n Simple_repeat Simple_repeat 1 33 0 2071 112 45 7 chr1 44806386 44806673 -197857680 - AluSx SINE Alu -14 298 1 466 155 0 0 chr1 44806673 44806744 -197857609 + MER2 DNA MER2_type 273 343 -2 258 257 86 13 chr1 44806744 44806896 -197857457 - L1P5 LINE L1 -705 5446 5284 1304 120 0 0 chr1 44807542 44807717 -197856636 + AluSg/x SINE Alu 124 298 -14 2420 101 0 0 chr1 44807717 44808015 -197856338 + AluSg SINE Alu 1 298 -12 382 289 61 41 chr1 44808104 44808203 -197856150 + HAL1 LINE L1 1541 1637 -870 2554 60 0 3 chr1 44808203 44808502 -197855851 + AluY SINE Alu 1 298 -13 382 289 61 41 chr1 44808502 44808599 -197855754 + HAL1 LINE L1 1637 1741 -766 339 261 98 13 chr1 44808779 44808932 -197855421 + HAL1b LINE L1 746 911 -437 2322 95 3 0 chr1 44808966 44809261 -197855092 + AluSp SINE Alu 1 296 -17 2489 59 0 39 chr1 44809525 44809832 -197854521 - AluY SINE Alu -16 295 1 2311 99 3 0 chr1 44809839 44810141 -197854212 - AluSp SINE Alu -10 303 1 266 278 111 34 chr1 44810216 44810272 -197854081 + L1ME4a LINE L1 5773 5823 -298 2413 61 14 0 chr1 44810272 44810565 -197853788 + AluY SINE Alu 1 297 -14 266 278 111 34 chr1 44810565 44810742 -197853611 + L1ME4a LINE L1 5823 6024 -97 30 27 0 0 chr1 44810811 44810848 -197853505 + AT_rich Low_complexity Low_complexity 1 37 0 2134 97 0 4 chr1 44810857 44811126 -197853227 + AluSx SINE Alu 1 268 -44 350 68 0 17 chr1 44811134 44811193 -197853160 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 2196 112 30 3 chr1 44811204 44811508 -197852845 + AluSx SINE Alu 1 312 0 2351 91 0 3 chr1 44811637 44811933 -197852420 - AluSc SINE Alu -14 295 1 217 298 97 24 chr1 44811976 44812100 -197852253 + MIR3 SINE MIR 3 135 -73 * 752 199 74 11 chr1 44812069 44812245 -197852108 + L2 LINE L2 2378 2564 -750 949 274 130 24 chr1 44812272 44812543 -197851810 + L2 LINE L2 2805 3046 -267 1743 103 130 11 chr1 44812543 44812805 -197851548 - AluSg SINE Alu -17 293 1 949 274 130 24 chr1 44812805 44812993 -197851360 + L2 LINE L2 3046 3313 0 263 310 74 50 chr1 44813084 44813242 -197851111 - L2 LINE L2 -198 3074 2906 2343 96 10 3 chr1 44813242 44813544 -197850809 + AluSx SINE Alu 1 304 -8 263 310 74 50 chr1 44813544 44813627 -197850726 - L2 LINE L2 -366 2906 2827 268 282 73 18 chr1 44814049 44814159 -197850194 + MIR SINE MIR 20 135 -127 197 233 66 0 chr1 44814398 44814473 -197849880 - L2 LINE L2 -37 3276 3152 288 300 63 67 chr1 44814612 44814773 -197849580 + L2 LINE L2 2831 2992 -280 2255 113 3 3 chr1 44814773 44815074 -197849279 + AluSx SINE Alu 1 301 -11 288 300 63 67 chr1 44815074 44815135 -197849218 + L2 LINE L2 2992 3052 -220 212 136 0 45 chr1 44816520 44816586 -197847767 + (T)n Simple_repeat Simple_repeat 1 63 0 216 0 0 0 chr1 44817895 44817919 -197846434 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 873 194 0 0 chr1 44817924 44818063 -197846290 - FRAM SINE Alu -33 143 5 491 333 153 8 chr1 44822431 44823086 -197841267 + L2 LINE L2 2020 2769 -545 422 256 72 16 chr1 44823096 44823221 -197841132 - MIR SINE MIR -1 261 130 2529 62 16 0 chr1 44823564 44823870 -197840483 + AluY SINE Alu 1 311 0 197 286 14 14 chr1 44824396 44824466 -197839887 - L2 LINE L2 -19 3253 3184 2191 123 0 19 chr1 44824544 44824860 -197839493 - AluSx SINE Alu -2 310 1 789 283 34 0 chr1 44825138 44825371 -197838982 + MIR SINE MIR 21 261 -1 255 352 0 0 chr1 44826435 44826526 -197837827 + G-rich Low_complexity Low_complexity 1 91 0 180 345 85 21 chr1 44827304 44827585 -197836768 + L2 LINE L2 2013 2311 -1003 388 301 59 52 chr1 44827660 44827949 -197836404 + L2 LINE L2 2554 2844 -470 1122 196 92 39 chr1 44828207 44828379 -197835974 + MLT1G3 LTR MaLR 144 306 -236 878 214 17 60 chr1 44828379 44828542 -197835811 - MER58A DNA MER1_type -2196 224 72 1985 128 55 0 chr1 44828542 44828831 -197835522 - AluSq SINE Alu -8 305 1 878 214 17 60 chr1 44828831 44828901 -197835452 - MER58A DNA MER1_type -2348 72 1 1122 196 92 39 chr1 44828901 44829099 -197835254 + MLT1G3 LTR MaLR 306 542 0 526 256 23 15 chr1 44837754 44837887 -197826466 - MER94 DNA DNA 0 134 1 239 312 11 45 chr1 44838527 44838722 -197825631 + GA-rich Low_complexity Low_complexity 1 188 0 1577 109 0 0 chr1 44840055 44840265 -197824088 + AluSq SINE Alu 5 214 -99 262 179 0 0 chr1 44840265 44840321 -197824032 + AluSq SINE Alu 248 303 0 215 224 0 15 chr1 44841892 44841959 -197822394 + (CA)n Simple_repeat Simple_repeat 1 66 0 679 334 162 20 chr1 44843040 44843907 -197820446 + L2 LINE L2 729 1811 -1503 2012 85 0 34 chr1 44843907 44844236 -197820117 + AluY SINE Alu 1 319 0 679 334 162 20 chr1 44844236 44844555 -197819798 + L2 LINE L2 1811 2084 -1230 472 303 153 8 chr1 44844564 44844931 -197819422 + L2 LINE L2 2273 2692 -622 308 341 20 45 chr1 44844986 44845232 -197819121 + L2 LINE L2 2868 3107 -165 1006 115 0 0 chr1 44845232 44845371 -197818982 - AluSp/q SINE Alu -16 297 159 241 364 20 0 chr1 44845502 44845601 -197818752 - L2 LINE L2 -206 3066 2966 318 336 30 0 chr1 44845656 44845787 -197818566 - L2 LINE L2 -4 3268 3134 2111 115 7 3 chr1 44845812 44846116 -197818237 - AluSq SINE Alu -8 305 1 183 80 0 0 chr1 44847149 44847174 -197817179 + (TG)n Simple_repeat Simple_repeat 2 26 0 493 318 153 18 chr1 44849378 44849705 -197814648 - L2 LINE L2 -3 3310 2940 434 325 5 57 chr1 44849742 44849936 -197814417 - L2 LINE L2 -509 2805 2622 1639 147 13 46 chr1 44849938 44850244 -197814109 - AluJo SINE Alu -16 296 1 640 269 24 12 chr1 44850380 44850547 -197813806 + MIR SINE MIR 4 172 -90 323 209 63 95 chr1 44851322 44851480 -197812873 - MIR3 SINE MIR -41 167 15 266 275 22 44 chr1 44852278 44852369 -197811984 - MIR3 SINE MIR -9 199 111 300 313 25 68 chr1 44852373 44852536 -197811817 + L2 LINE L2 2491 2646 -668 817 306 67 9 chr1 44852912 44853239 -197811114 + MLT1K LTR MaLR 217 562 -26 193 273 55 0 chr1 44855774 44855829 -197808524 + L2 LINE L2 3034 3091 -181 234 313 0 0 chr1 44857570 44857634 -197806719 - MIR SINE MIR -16 246 183 672 165 50 0 chr1 44857852 44857973 -197806380 + MER20 DNA MER1_type 87 213 -6 2259 77 28 0 chr1 44859741 44860028 -197804325 - AluSc SINE Alu -14 295 1 406 327 154 9 chr1 44863039 44863259 -197801094 - MIR SINE MIR -6 256 5 262 249 67 85 chr1 44864835 44865000 -197799353 - MIR SINE MIR -65 197 36 1673 156 46 71 chr1 44865124 44865526 -197798827 + Charlie1b DNA MER1_type 44 434 -2327 2349 93 3 0 chr1 44865526 44865838 -197798515 + AluSp SINE Alu 1 313 0 1673 156 46 71 chr1 44865838 44865915 -197798438 + Charlie1b DNA MER1_type 434 511 -12 283 260 90 40 chr1 44867900 44868000 -197796353 - MIR SINE MIR -114 148 44 212 329 174 23 chr1 44868349 44868699 -197795654 - L2 LINE L2 -1008 2306 1904 1074 142 0 0 chr1 44869540 44869702 -197794651 + AluSp SINE Alu 138 299 -14 612 185 37 9 chr1 44869704 44869812 -197794541 - AluJo/FLAM SINE Alu -201 111 1 27 49 0 0 chr1 44869876 44869917 -197794436 + AT_rich Low_complexity Low_complexity 1 41 0 1450 149 0 5 chr1 44869993 44870215 -197794138 - AluJb SINE Alu -10 302 82 192 77 0 0 chr1 44870215 44870241 -197794112 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 415 225 126 89 chr1 44870266 44870457 -197793896 + MIR SINE MIR 59 256 -6 223 233 0 0 chr1 44870424 44870467 -197793886 + L2 LINE L2 3228 3270 -2 * 469 290 81 32 chr1 44870540 44870761 -197793592 + L2 LINE L2 2214 2445 -869 456 285 105 13 chr1 44870902 44871130 -197793223 - MLT1L LTR MaLR -8 607 359 222 260 14 27 chr1 44871203 44871276 -197793077 - L2 LINE L2 -70 3243 3172 713 166 166 25 chr1 44871281 44871438 -197792915 + AluJo SINE Alu 117 295 -17 212 186 47 0 chr1 44871592 44871635 -197792718 + L2 LINE L2 3198 3242 -30 2267 88 0 0 chr1 44871691 44871985 -197792368 + AluY SINE Alu 1 294 -17 2199 113 7 0 chr1 44871994 44872304 -197792049 + AluSq SINE Alu 1 312 -1 186 257 57 14 chr1 44872319 44872389 -197791964 - MIR SINE MIR -5 257 185 3867 177 40 18 chr1 44872390 44873429 -197790924 - L1MB7 LINE L1 -19 6165 5102 625 224 69 0 chr1 44873456 44873630 -197790723 + L2 LINE L2 2519 2704 -610 1956 129 51 0 chr1 44873653 44873947 -197790406 + AluSx SINE Alu 2 310 -2 440 334 137 27 chr1 44875048 44875488 -197788865 + L2 LINE L2 2050 2579 -735 2189 115 0 0 chr1 44875488 44875792 -197788561 - AluSx SINE Alu -8 304 1 440 334 137 27 chr1 44875792 44875973 -197788380 + L2 LINE L2 2579 2739 -575 2095 99 0 20 chr1 44875976 44876270 -197788083 + AluSx SINE Alu 1 288 -24 2184 108 0 0 chr1 44876280 44876575 -197787778 + AluY SINE Alu 1 295 -16 180 0 0 0 chr1 44878562 44878582 -197785771 + (CA)n Simple_repeat Simple_repeat 2 21 0 279 258 22 34 chr1 44878707 44878885 -197785468 + (CA)n Simple_repeat Simple_repeat 2 177 0 209 186 0 0 chr1 44878925 44878968 -197785385 + (CA)n Simple_repeat Simple_repeat 2 44 0 399 285 148 49 chr1 44882346 44882572 -197781781 + MIR SINE MIR 4 252 -10 1436 71 5 0 chr1 44884194 44884378 -197779975 + AluSq SINE Alu 5 189 -124 303 364 96 21 chr1 44886902 44887089 -197777264 + MIR SINE MIR 56 256 -6 21 0 0 0 chr1 44938079 44938100 -197726253 + AT_rich Low_complexity Low_complexity 1 21 0 2594 49 0 0 chr1 44938284 44938592 -197725761 + AluY SINE Alu 1 308 -3 270 279 0 0 chr1 44938803 44938864 -197725489 - MLT1K LTR MaLR -348 240 180 1665 245 86 19 chr1 44938966 44939215 -197725138 - MLT1F1 LTR MaLR -2 565 334 1024 198 77 135 chr1 44939215 44939629 -197724724 - MLT1B LTR MaLR 0 390 1 1665 245 86 19 chr1 44939629 44939845 -197724508 - MLT1F1 LTR MaLR -233 334 69 2112 121 7 0 chr1 44939893 44940198 -197724155 - AluSx SINE Alu -5 307 1 2036 141 83 3 chr1 44940210 44940558 -197723795 - L1PB1 LINE L1 0 6151 5776 326 157 12 0 chr1 44940574 44940657 -197723696 + (TA)n Simple_repeat Simple_repeat 1 84 0 270 237 13 0 chr1 44940749 44940825 -197723528 - L1ME3A LINE L1 -219 5951 5875 3649 138 15 1 chr1 44940828 44941774 -197722579 - L1P5 LINE L1 -358 5793 4838 2009 106 0 0 chr1 44941776 44942050 -197722303 - AluSx SINE Alu -38 274 1 6140 196 17 3 chr1 44942051 44943363 -197720990 - L1 LINE L1 -1582 4564 3235 1803 132 11 7 chr1 44943363 44943678 -197720675 - AluJb SINE Alu 0 326 11 398 223 10 0 chr1 44944167 44944270 -197720083 - L1ME3A LINE L1 -219 5951 5848 889 266 100 19 chr1 44944393 44944762 -197719591 - L1ME3A LINE L1 -366 5796 5398 314 262 126 0 chr1 44945726 44945829 -197718524 + L1ME4a LINE L1 5536 5651 -470 231 296 26 26 chr1 44946510 44946625 -197717728 + L1ME4a LINE L1 5827 5941 -180 190 342 201 0 chr1 44947787 44947936 -197716417 - L2 LINE L2 -192 3080 2902 292 267 38 9 chr1 44949828 44949933 -197714420 - MIR SINE MIR -57 151 44 477 242 185 0 chr1 44951645 44951802 -197712551 - MER5A DNA MER1_type 0 189 4 225 235 276 0 chr1 44955056 44955154 -197709199 - MIR SINE MIR -64 144 20 1294 137 10 5 chr1 44956463 44956667 -197707686 + AluSx SINE Alu 1 205 -107 23 0 0 0 chr1 44958689 44958712 -197705641 + GC_rich Low_complexity Low_complexity 1 23 0 429 278 192 0 chr1 44959897 44960095 -197704258 + MIR SINE MIR 2 237 -25 805 200 53 24 chr1 44960162 44960332 -197704021 - FAM SINE Alu 0 175 1 551 326 39 9 chr1 44962460 44962693 -197701660 + MIR SINE MIR 17 256 -6 490 317 64 25 chr1 44965262 44965622 -197698731 + L2 LINE L2 1611 1984 -1330 355 318 107 40 chr1 44966060 44966312 -197698041 + L2 LINE L2 2999 3267 -46 774 223 102 0 chr1 44967059 44967256 -197697097 + MIR SINE MIR 45 261 -1 2028 117 10 0 chr1 44967259 44967550 -197696803 - AluSx SINE Alu -18 294 1 198 356 165 0 chr1 44968848 44968963 -197695390 - MIR SINE MIR -70 192 59 443 185 0 0 chr1 44971567 44971648 -197692705 - AluJb SINE Alu 0 312 232 1136 131 0 6 chr1 44971653 44971821 -197692532 - AluJb SINE Alu -130 182 16 236 276 17 0 chr1 44972021 44972079 -197692274 - L2 LINE L2 -1037 2277 2219 229 309 59 0 chr1 44972216 44972284 -197692069 - L2 LINE L2 -60 3253 3182 230 313 34 34 chr1 44977447 44977623 -197686730 + (CACGC)n Simple_repeat Simple_repeat 1 176 0 * 259 278 37 37 chr1 44977512 44977674 -197686679 + (CACAC)n Simple_repeat Simple_repeat 5 166 0 669 274 129 15 chr1 44978628 44979119 -197685234 + L1ME4a LINE L1 5256 5791 -330 849 284 107 39 chr1 44979753 44980250 -197684103 + L2 LINE L2 2786 3313 0 305 325 72 75 chr1 44980261 44980526 -197683827 + L1ME4a LINE L1 5851 6114 -7 862 348 34 26 chr1 44980585 44980697 -197683656 + L1ME LINE L1 888 998 -5949 267 31 0 0 chr1 44980697 44980729 -197683624 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 862 348 34 26 chr1 44980729 44981084 -197683269 + L1ME LINE L1 998 1359 -5588 489 268 148 10 chr1 44981262 44981620 -197682733 + L1ME LINE L1 1312 1727 -5220 322 138 18 128 chr1 44981619 44981728 -197682625 + L1MB8 LINE L1 6082 6178 0 * 1482 167 133 4 chr1 44981738 44982001 -197682352 + AluJo SINE Alu 1 297 -5 2543 168 7 21 chr1 44982062 44982497 -197681856 + LTR3 LTR ERVK 1 429 0 630 200 0 0 chr1 44982505 44982610 -197681743 + FLAM_A SINE Alu 2 106 -36 180 0 0 0 chr1 44982626 44982646 -197681707 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 33 0 0 0 chr1 44982791 44982824 -197681529 + GC_rich Low_complexity Low_complexity 1 33 0 351 0 0 0 chr1 44982957 44982996 -197681357 + (CA)n Simple_repeat Simple_repeat 2 40 0 2899 232 45 52 chr1 44983028 44983275 -197681078 + L1M4 LINE L1 532 779 -5763 2136 137 3 0 chr1 44983275 44983575 -197680778 + AluSg SINE Alu 1 301 -9 2899 232 45 52 chr1 44983575 44983587 -197680766 + L1M4 LINE L1 779 790 -5752 279 54 0 0 chr1 44983587 44983624 -197680729 + (CA)n Simple_repeat Simple_repeat 2 38 0 2899 232 45 52 chr1 44983624 44984132 -197680221 + L1M4 LINE L1 790 1295 -5247 1719 190 11 3 chr1 44984132 44984416 -197679937 - AluSx SINE Alu -26 286 1 2899 232 45 52 chr1 44984416 44984542 -197679811 + L1M4 LINE L1 1295 1420 -5122 9543 181 28 80 chr1 44984558 44984887 -197679466 + L1MB7 LINE L1 2561 2906 -3278 627 244 0 0 chr1 44984887 44985014 -197679339 + FLAM_A SINE Alu 1 127 -6 9543 181 28 80 chr1 44985014 44985093 -197679260 + L1MB7 LINE L1 2906 2988 -3196 2338 120 0 0 chr1 44985093 44985402 -197678951 + AluY SINE Alu 1 309 -2 9543 181 28 80 chr1 44985402 44985837 -197678516 + L1MB7 LINE L1 2988 3444 -2740 2227 108 40 0 chr1 44985837 44986133 -197678220 + AluSc SINE Alu 1 308 -1 9543 181 28 80 chr1 44986133 44987222 -197677131 + L1MB7 LINE L1 3444 4588 -1596 1917 159 10 7 chr1 44987222 44987517 -197676836 - AluSx SINE Alu -16 296 1 9543 181 28 80 chr1 44987517 44987655 -197676698 + L1MB7 LINE L1 4588 4732 -1452 2726 106 3 5 chr1 44987655 44988031 -197676322 + THE1C LTR MaLR 1 375 0 9543 181 28 80 chr1 44988031 44988579 -197675774 + L1MB7 LINE L1 4732 5307 -877 860 141 0 0 chr1 44988579 44988707 -197675646 - FLAM_C SINE Alu -1 132 5 9543 181 28 80 chr1 44988707 44989039 -197675314 + L1MB7 LINE L1 5307 5655 -529 1514 222 0 29 chr1 44989039 44989345 -197675008 + AluJb SINE Alu 1 297 -15 9543 181 28 80 chr1 44989345 44989651 -197674702 + L1MB7 LINE L1 5655 5593 -591 1770 161 68 0 chr1 44989651 44989758 -197674595 + AluJo SINE Alu 11 109 -203 216 0 0 0 chr1 44989758 44989782 -197674571 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1770 161 68 0 chr1 44989782 44989954 -197674399 + AluJo SINE Alu 109 309 -3 9543 181 28 80 chr1 44989954 44990503 -197673850 + L1MB7 LINE L1 5592 6168 -16 315 279 22 106 chr1 44990509 44990735 -197673618 + L1M4 LINE L1 1516 1722 -5103 2128 135 10 0 chr1 44990761 44991064 -197673289 + AluSx SINE Alu 1 306 -6 815 174 0 0 chr1 44991070 44991202 -197673151 + FLAM_C SINE Alu 1 132 -11 1735 97 0 4 chr1 44991226 44991452 -197672901 - AluSg1 SINE Alu -84 225 1 1358 280 15 37 chr1 44991463 44991791 -197672562 + L1M4 LINE L1 1571 1905 -4920 2484 53 0 0 chr1 44991791 44992117 -197672236 - AluY SINE Alu 0 326 1 1791 176 0 17 chr1 44992123 44992425 -197671928 - AluJb SINE Alu -15 297 1 1358 280 15 37 chr1 44992425 44992643 -197671710 + L1M4 LINE L1 1910 2263 -4562 2253 122 7 3 chr1 44992643 44992946 -197671407 + AluSx SINE Alu 1 304 -8 1569 149 86 19 chr1 44993592 44993883 -197670470 - AluJb SINE Alu 0 312 1 285 320 122 33 chr1 44994202 44994564 -197669789 + L1MEd LINE L1 129 522 -5683 2041 138 6 31 chr1 44994690 44995036 -197669317 + AluSx SINE Alu 1 338 0 279 280 52 71 chr1 44995043 44995254 -197669099 + L1MEd LINE L1 688 894 -5311 576 217 103 45 chr1 44995389 44995779 -197668574 + L1MEd LINE L1 1096 1556 -4840 2250 127 0 6 chr1 44995784 44996098 -197668255 + AluSx SINE Alu 1 312 0 189 107 0 0 chr1 44996331 44996359 -197667994 + (TA)n Simple_repeat Simple_repeat 1 28 0 1303 184 144 0 chr1 44996360 44996505 -197667848 - AluJb SINE Alu -26 286 163 189 0 0 0 chr1 44996505 44996526 -197667827 + (TG)n Simple_repeat Simple_repeat 2 22 0 1303 184 144 0 chr1 44996526 44996630 -197667723 - AluJb SINE Alu -149 163 1 311 271 54 85 chr1 44996811 44996901 -197667452 + L1MEd LINE L1 1543 1629 -4767 1867 176 3 7 chr1 44996901 44997208 -197667145 + AluJb SINE Alu 1 306 -6 311 271 54 85 chr1 44997208 44997246 -197667107 + L1MEd LINE L1 1629 1667 -4729 2731 202 44 16 chr1 44997317 44998046 -197666307 + L1ME1 LINE L1 5405 6178 0 495 218 192 13 chr1 44998083 44998239 -197666114 - MER63A DNA MER1_type 0 210 27 532 277 73 19 chr1 44998853 44999059 -197665294 - LTR33 LTR ERVL 0 521 305 2104 139 7 0 chr1 44999263 44999564 -197664789 - AluJb SINE Alu -9 303 1 212 245 0 43 chr1 44999584 44999678 -197664675 + (TA)n Simple_repeat Simple_repeat 2 91 0 2347 113 0 0 chr1 44999739 45000049 -197664304 + AluSx SINE Alu 1 310 -2 3616 145 138 124 chr1 45000184 45000797 -197663556 - L1MC3 LINE L1 -1 7784 7056 264 261 0 33 chr1 45000797 45000889 -197663464 - MLT1F1 LTR MaLR -444 123 35 3616 145 138 124 chr1 45000889 45001353 -197663000 - L1MC3 LINE L1 -729 7056 6600 392 161 18 71 chr1 45001369 45001481 -197662872 - L1MC3 LINE L1 -1137 6648 6543 441 205 37 58 chr1 45001487 45001677 -197662676 + L1MEd LINE L1 2047 2232 -4164 708 269 23 19 chr1 45002002 45002218 -197662135 + LTR33 LTR ERVL 305 521 0 1176 168 0 0 chr1 45003100 45003279 -197661074 + MER5A DNA MER1_type 7 185 -4 333 237 93 21 chr1 45003357 45003454 -197660899 + MER5A DNA MER1_type 9 112 -77 204 216 0 0 chr1 45003517 45003554 -197660799 - MER5A DNA MER1_type 0 189 153 2530 312 73 34 chr1 45003860 45005098 -197659255 + ERVL LTR ERVL 1639 2924 -2840 808 309 20 0 chr1 45005184 45005430 -197658923 + ERVL LTR ERVL 4347 4597 -1167 7121 178 115 42 chr1 45005442 45007077 -197657276 + MER52A LTR ERV1 1 1755 0 812 299 58 23 chr1 45007082 45007427 -197656926 + ERVL LTR ERVL 4611 4967 -797 662 329 8 8 chr1 45007494 45007746 -197656607 + ERVL LTR ERVL 5130 5381 -383 1749 171 7 7 chr1 45007789 45008075 -197656278 - AluJb SINE Alu -9 303 18 3172 171 44 18 chr1 45008087 45008695 -197655658 - MLT1E3 LTR MaLR 0 624 1 653 279 72 11 chr1 45008897 45009159 -197655194 + LTR33 LTR ERVL 1 278 -243 534 232 22 14 chr1 45009215 45009353 -197655000 + LTR33 LTR ERVL 383 521 0 1752 167 66 3 chr1 45009868 45010156 -197654197 + AluJo SINE Alu 1 306 -6 604 335 82 16 chr1 45010229 45010605 -197653748 + L1MC/D LINE L1 5357 5757 -2051 2334 117 0 0 chr1 45010684 45010992 -197653361 - AluSx SINE Alu -4 308 1 240 21 21 64 chr1 45011359 45011406 -197652947 + L1MA1 LINE L1 6259 6305 0 1023 111 49 31 chr1 45011409 45011571 -197652782 - AluSg/x SINE Alu -22 290 126 278 229 0 14 chr1 45013890 45013960 -197650393 - MLT1K LTR MaLR -3 585 517 180 309 211 42 chr1 45013995 45014470 -197649883 - L2 LINE L2 -437 2877 2323 404 229 92 14 chr1 45014475 45014588 -197649765 + MIR SINE MIR 8 128 -80 739 296 104 21 chr1 45015665 45016186 -197648167 - L2 LINE L2 -420 2894 2331 208 270 129 74 chr1 45022389 45022552 -197641801 + L2 LINE L2 2891 3062 -210 1178 174 14 18 chr1 45022590 45022808 -197641545 + MER20 DNA MER1_type 1 217 -2 197 327 100 13 chr1 45026185 45026335 -197638018 + L2 LINE L2 492 654 -2660 475 180 391 0 chr1 45026368 45026496 -197637857 - MER5A DNA MER1_type -6 183 6 980 191 43 19 chr1 45026515 45026724 -197637629 + MER58A DNA MER1_type 7 220 -4 198 301 127 53 chr1 45026730 45027029 -197637324 + L2 LINE L2 701 1021 -2293 384 260 109 0 chr1 45027142 45027334 -197637019 + L2 LINE L2 2395 2607 -707 382 287 30 0 chr1 45027738 45027839 -197636514 - L2 LINE L2 -2 3311 3208 746 306 82 43 chr1 45027898 45028313 -197636040 + L2 LINE L2 2842 3272 0 1908 160 20 0 chr1 45029687 45029987 -197634366 + AluJb SINE Alu 1 306 -6 737 249 99 14 chr1 45030748 45030961 -197633392 - MIR SINE MIR -21 241 11 256 282 153 85 chr1 45031026 45031590 -197632763 + L2 LINE L2 2247 2848 -466 258 264 40 56 chr1 45032088 45032213 -197632140 - MIR SINE MIR -78 184 62 237 65 0 0 chr1 45032549 45032580 -197631773 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 205 281 0 0 chr1 45034254 45034311 -197630042 + (CCCGAA)n Simple_repeat Simple_repeat 6 62 0 186 143 0 0 chr1 45034320 45034355 -197629998 + (CCG)n Simple_repeat Simple_repeat 3 37 0 246 220 11 44 chr1 45034356 45034447 -197629906 + C-rich Low_complexity Low_complexity 1 88 0 450 270 230 8 chr1 45036200 45036452 -197627901 + L2 LINE L2 1993 2300 -1014 2092 103 40 33 chr1 45036745 45037046 -197627307 + AluSx SINE Alu 1 303 -9 473 314 17 47 chr1 45037123 45037295 -197627058 + L2 LINE L2 3105 3271 -1 24 0 0 0 chr1 45038774 45038798 -197625555 + AT_rich Low_complexity Low_complexity 1 24 0 795 150 0 24 chr1 45038798 45038925 -197625428 - AluJb SINE Alu -187 125 2 333 308 61 59 chr1 45038995 45039406 -197624947 + L2 LINE L2 1372 1875 -1439 2416 91 0 7 chr1 45039406 45039715 -197624638 - AluSx SINE Alu -5 307 1 333 308 61 59 chr1 45039715 45039817 -197624536 + L2 LINE L2 1875 1975 -1339 431 310 121 58 chr1 45039866 45040708 -197623645 + L2 LINE L2 803 1697 -1617 851 163 0 7 chr1 45040723 45040858 -197623495 - AluJo SINE Alu -178 134 1 1431 157 64 0 chr1 45040882 45041131 -197623222 - L1PB3 LINE L1 -7 6147 5883 302 320 150 7 chr1 45041878 45042270 -197622083 + L2 LINE L2 2623 3075 -197 298 303 0 13 chr1 45042366 45042442 -197621911 + MIR SINE MIR 188 262 0 211 232 36 0 chr1 45042599 45042655 -197621698 + L2 LINE L2 2958 3015 -298 551 230 91 56 chr1 45042655 45042942 -197621411 - LTR16A1 LTR ERVL 0 457 161 810 241 91 39 chr1 45043146 45043432 -197620921 + L2 LINE L2 3013 3313 0 482 237 143 62 chr1 45043811 45044060 -197620293 + MIR SINE MIR 3 262 0 277 309 146 36 chr1 45044232 45044452 -197619901 + L2 LINE L2 310 553 -2761 190 147 0 0 chr1 45044458 45044492 -197619861 - L2 LINE L2 0 3313 3280 182 75 200 0 chr1 45044552 45044592 -197619761 + MIR SINE MIR 195 242 -20 2639 188 28 9 chr1 45045965 45046544 -197617809 + L1MB7 LINE L1 4735 5324 -822 2220 97 0 39 chr1 45046552 45046862 -197617491 + AluSq SINE Alu 1 298 -15 649 216 0 22 chr1 45046866 45047005 -197617348 + AluSc SINE Alu 174 309 0 27 29 0 0 chr1 45047006 45047040 -197617313 + AT_rich Low_complexity Low_complexity 1 34 0 2188 133 0 0 chr1 45047045 45047339 -197617014 + AluSx SINE Alu 4 297 -15 3778 174 44 7 chr1 45047343 45048097 -197616256 + L1MB7 LINE L1 5325 6106 -78 1017 196 0 11 chr1 45048107 45048291 -197616062 + AluSg SINE Alu 1 182 -128 317 355 18 14 chr1 45048350 45048715 -197615638 + CT-rich Low_complexity Low_complexity 1 366 0 986 190 5 27 chr1 45048952 45049136 -197615217 + AluSg/x SINE Alu 129 308 -2 2128 134 13 3 chr1 45049455 45049762 -197614591 - AluSx SINE Alu -2 310 1 993 179 67 0 chr1 45049836 45050031 -197614322 - MER3 DNA MER1_type -1 208 1 1679 165 53 0 chr1 45051516 45051688 -197612665 - AluJb SINE Alu -8 304 112 230 0 33 0 chr1 45051688 45051718 -197612635 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1679 165 53 0 chr1 45051718 45051811 -197612542 - AluJb SINE Alu -200 112 25 965 331 36 29 chr1 45052230 45052756 -197611597 - ERVL LTR ERVL -3249 2515 1986 741 217 35 88 chr1 45053911 45054137 -197610216 - MLT1K LTR MaLR -306 282 69 1721 168 23 29 chr1 45054279 45054589 -197609764 - AluJb SINE Alu -4 308 1 597 215 35 64 chr1 45056096 45056133 -197608220 + MLT1K LTR MaLR 412 449 -139 1343 190 9 0 chr1 45056133 45056354 -197607999 - MER58A DNA MER1_type 0 224 2 597 215 35 64 chr1 45056354 45056488 -197607865 + MLT1K LTR MaLR 449 578 -10 1087 122 6 214 chr1 45056970 45057297 -197607056 - AluSq SINE Alu -19 294 36 621 324 57 40 chr1 45057893 45058366 -197605987 + LTR16C LTR ERVL 1 481 -10 1678 111 67 91 chr1 45060439 45060736 -197603617 + AluSx SINE Alu 1 290 -22 890 228 60 81 chr1 45060809 45060906 -197603447 - MER20B DNA MER1_type -5 778 680 2367 113 3 0 chr1 45060906 45061216 -197603137 + AluSx SINE Alu 1 311 -1 890 228 60 81 chr1 45061216 45061588 -197602765 - MER20B DNA MER1_type -103 680 319 794 277 15 23 chr1 45061696 45061956 -197602397 + MER20B DNA MER1_type 24 281 -502 6736 49 8 29 chr1 45062565 45063436 -197600917 - SVA Other Other 0 1386 534 321 68 0 0 chr1 45063625 45063669 -197600684 + (GGGAGA)n Simple_repeat Simple_repeat 6 49 0 412 264 105 112 chr1 45063944 45064240 -197600113 + MLT1K LTR MaLR 289 582 -6 475 286 41 47 chr1 45064265 45064436 -197599917 - L2 LINE L2 -24 3289 3120 632 184 8 48 chr1 45064443 45064568 -197599785 + L2 LINE L2 3192 3311 -2 331 307 128 18 chr1 45064606 45064884 -197599469 - L2 LINE L2 -213 3059 2748 2290 107 7 0 chr1 45065083 45065392 -197598961 + AluSx SINE Alu 1 311 -1 1938 138 0 36 chr1 45065801 45066106 -197598247 + AluJo SINE Alu 5 298 -14 2174 112 0 33 chr1 45066141 45066446 -197597907 + AluSg SINE Alu 1 295 -15 404 339 66 15 chr1 45066475 45066808 -197597545 + HAL1b LINE L1 389 738 -610 2221 114 0 13 chr1 45067976 45068275 -197596078 - AluSg SINE Alu -15 295 1 4132 92 43 40 chr1 45068276 45069057 -197595296 - LOR1-int LTR ERV1 -6005 2115 1332 2347 97 10 6 chr1 45069079 45069390 -197594963 - AluSx SINE Alu 0 312 1 27 49 0 0 chr1 45069450 45069491 -197594862 + AT_rich Low_complexity Low_complexity 1 41 0 315 253 13 0 chr1 45069518 45069597 -197594756 + L1M4 LINE L1 3718 3797 -2349 356 159 0 0 chr1 45069598 45069661 -197594692 + L1M4 LINE L1 5228 5290 -856 180 0 0 0 chr1 45069667 45069687 -197594666 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1232 102 0 0 chr1 45069787 45069944 -197594409 + AluSg/x SINE Alu 156 312 0 13984 113 46 33 chr1 45069966 45070748 -197593605 + LOR1b-int LTR ERV1 1332 2102 -6018 2369 119 0 0 chr1 45070748 45071060 -197593293 + AluSq SINE Alu 1 312 -1 13984 113 46 33 chr1 45071060 45072384 -197591969 + LOR1b-int LTR ERV1 2102 3480 -4640 4995 62 85 133 chr1 45072384 45072476 -197591877 - LTR12 LTR ERV1 0 826 731 2459 88 7 0 chr1 45072476 45072781 -197591572 - AluY SINE Alu -4 307 1 4995 62 85 133 chr1 45072781 45073555 -197590798 - LTR12 LTR ERV1 -95 731 1 13984 113 46 33 chr1 45073555 45073973 -197590380 + LOR1b-int LTR ERV1 3480 3891 -4229 615 100 0 0 chr1 45073973 45074063 -197590290 + LOR1b-int LTR ERV1 4086 4175 -3945 1556 150 29 8 chr1 45074064 45074310 -197590043 + AluSx SINE Alu 1 251 -61 780 76 92 0 chr1 45074310 45074429 -197589924 + LOR1b-int LTR ERV1 5049 5178 -2942 1762 92 28 78 chr1 45074549 45074774 -197589579 + LOR1b-int LTR ERV1 5185 5420 -2700 2339 95 0 13 chr1 45074774 45075080 -197589273 - AluY SINE Alu -9 302 1 2510 79 0 3 chr1 45075090 45075395 -197588958 - AluY SINE Alu -7 304 1 1762 92 28 78 chr1 45075395 45075516 -197588837 + LOR1b-int LTR ERV1 5429 5524 -2596 * 1791 110 4 4 chr1 45075506 45075770 -197588583 + LOR1b-int LTR ERV1 5801 6064 -2056 583 143 0 0 chr1 45075769 45075860 -197588493 + LOR1b-int LTR ERV1 8030 8120 0 * 1965 174 147 2 chr1 45075861 45076263 -197588090 + LOR1b LTR ERV1 2 461 0 224 320 82 33 chr1 45077604 45077726 -197586627 + MIR SINE MIR 8 135 -127 260 282 58 10 chr1 45077948 45078051 -197586302 + L2 LINE L2 2551 2658 -656 522 306 15 15 chr1 45078156 45078362 -197585991 - L2 LINE L2 -214 3058 2853 1166 110 0 0 chr1 45079394 45079539 -197584814 + AluSq/x SINE Alu 1 145 -168 2203 69 83 0 chr1 45079539 45079816 -197584537 + AluY SINE Alu 1 300 -11 271 271 57 29 chr1 45080514 45080584 -197583769 - L2 LINE L2 -9 3263 3192 1458 289 66 55 chr1 45081313 45082190 -197582163 - L1MEd LINE L1 -4866 1253 367 1268 229 86 39 chr1 45082346 45082835 -197581518 - HAL1 LINE L1 0 2507 1996 1928 174 115 14 chr1 45082835 45083254 -197581099 + LOR1b LTR ERV1 1 461 0 1892 122 93 15 chr1 45083255 45083598 -197580755 + LOR1b-int LTR ERV1 2 371 -7749 6213 162 78 28 chr1 45083608 45084668 -197579685 + LOR1-int LTR ERV1 203 1209 -6911 2180 86 0 46 chr1 45084668 45084993 -197579360 + AluSx SINE Alu 1 310 -2 6213 162 78 28 chr1 45084993 45085368 -197578985 + LOR1-int LTR ERV1 1209 1564 -6556 2290 76 0 44 chr1 45085368 45085684 -197578669 - AluY SINE Alu -9 302 1 6213 162 78 28 chr1 45085684 45086759 -197577594 + LOR1-int LTR ERV1 1564 3306 -4814 521 99 0 0 chr1 45086755 45086826 -197577527 + LOR1-int LTR ERV1 2258 2328 -5792 * 3604 198 46 7 chr1 45086848 45087667 -197576686 - L1M4 LINE L1 -1004 5142 4292 420 248 33 33 chr1 45087666 45087819 -197576534 - HAL1 LINE L1 -1013 1494 1342 * 680 208 87 0 chr1 45087814 45087963 -197576390 - HAL1 LINE L1 -2129 378 217 236 271 9 28 chr1 45087972 45088079 -197576274 + L1MC5 LINE L1 7797 7901 -60 1805 130 3 57 chr1 45088186 45088501 -197575852 - AluJo SINE Alu -14 298 1 2323 84 0 3 chr1 45088597 45088906 -197575447 - AluSc SINE Alu -1 308 1 327 235 45 0 chr1 45089082 45089206 -197575147 - L1MD3 LINE L1 -2 7969 6256 839 208 82 3 chr1 45089730 45089982 -197574371 + MER46C DNA MER2_type 1 338 0 789 173 76 46 chr1 45090656 45090853 -197573500 - MIR SINE MIR -57 205 3 336 64 0 0 chr1 45091046 45091093 -197573260 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 495 293 104 68 chr1 45091094 45091535 -197572818 - L2 LINE L2 -12 3260 2804 320 185 109 54 chr1 45091767 45091859 -197572494 - MER5A DNA MER1_type -84 105 9 2431 153 30 17 chr1 45092204 45092399 -197571954 + MSTB LTR MaLR 3 194 -232 2156 70 0 0 chr1 45092399 45092672 -197571681 + AluY SINE Alu 1 273 -38 2431 153 30 17 chr1 45092672 45092880 -197571473 + MSTB LTR MaLR 194 411 -15 2394 120 48 6 chr1 45093019 45093377 -197570976 + LTR57 LTR ERVL 1 373 -38 235 263 0 0 chr1 45093544 45093601 -197570752 + L2 LINE L2 3255 3311 -2 222 91 0 0 chr1 45094276 45094309 -197570044 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 642 325 85 35 chr1 45095773 45096173 -197568180 + L2 LINE L2 2852 3271 -1 2200 61 3 20 chr1 45096609 45096905 -197567448 - AluY SINE Alu -20 291 1 180 0 0 0 chr1 45096915 45096935 -197567418 + (T)n Simple_repeat Simple_repeat 1 20 0 366 306 49 25 chr1 45096935 45097132 -197567221 - MIR SINE MIR -14 248 46 2182 99 0 0 chr1 45100030 45100322 -197564031 - AluSg SINE Alu -16 294 3 395 321 6 62 chr1 45100406 45100568 -197563785 + MIR3 SINE MIR 41 193 -15 1908 95 3 65 chr1 45101653 45101959 -197562394 - AluSx SINE Alu -23 289 3 225 236 55 0 chr1 45102371 45102426 -197561927 + L2 LINE L2 3215 3272 0 489 258 76 76 chr1 45102829 45103281 -197561072 - L2 LINE L2 -263 3009 2540 1018 190 10 25 chr1 45103625 45103825 -197560528 + MER20 DNA MER1_type 23 219 0 1648 194 33 42 chr1 45104445 45104806 -197559547 + MLT1A1 LTR MaLR 1 358 -7 1196 250 198 9 chr1 45105112 45105739 -197558614 - L2 LINE L2 -207 3106 2346 230 296 178 15 chr1 45105868 45106003 -197558350 + L2 LINE L2 2640 2796 -518 1757 226 79 56 chr1 45106796 45107350 -197557003 + MLT1G LTR MaLR 12 540 -50 2140 106 3 0 chr1 45107350 45107642 -197556711 - AluSx SINE Alu -19 293 1 1757 226 79 56 chr1 45107642 45107695 -197556658 + MLT1G LTR MaLR 540 590 0 1019 234 28 0 chr1 45108017 45108235 -197556118 + MER58A DNA MER1_type 1 224 0 243 0 0 0 chr1 45108442 45108469 -197555884 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 377 243 159 9 chr1 45108530 45108637 -197555716 - MIR SINE MIR -70 192 70 413 305 71 9 chr1 45108986 45109196 -197555157 + MIR SINE MIR 34 256 -6 336 300 174 16 chr1 45110989 45111179 -197553174 + L2 LINE L2 3091 3310 -3 257 310 69 9 chr1 45111707 45111823 -197552530 - MIR SINE MIR -108 154 32 193 250 0 0 chr1 45112242 45112286 -197552067 - MIR SINE MIR -7 255 212 264 319 0 0 chr1 45112585 45112654 -197551699 + L2 LINE L2 3204 3272 0 1426 209 4 0 chr1 45112798 45113075 -197551278 - AluJb SINE Alu -32 280 3 285 207 36 54 chr1 45113310 45113421 -197550932 - L1ME4a LINE L1 -31 6090 5982 215 0 67 0 chr1 45113534 45113564 -197550789 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1628 135 85 0 chr1 45113566 45113825 -197550528 - AluSx SINE Alu -31 281 1 688 284 38 50 chr1 45114369 45114686 -197549667 + L2 LINE L2 2999 3311 -2 2043 117 3 25 chr1 45114886 45115202 -197549151 - AluJo SINE Alu -3 309 1 254 301 96 59 chr1 45115615 45115970 -197548383 - L2 LINE L2 -498 2816 2449 * 373 270 32 16 chr1 45115958 45116084 -197548269 + L2 LINE L2 3180 3307 -6 186 316 109 71 chr1 45116400 45116694 -197547659 + L2 LINE L2 2949 3253 -19 303 248 119 46 chr1 45117253 45117362 -197546991 + L2 LINE L2 3136 3252 -20 529 314 63 0 chr1 45117549 45117724 -197546629 + MIR SINE MIR 7 192 -70 241 208 21 0 chr1 45117742 45117790 -197546563 - L2 LINE L2 -15 3298 3250 3400 166 14 19 chr1 45118496 45119134 -197545219 + L1MD2 LINE L1 5254 5888 -354 * 4434 100 11 50 chr1 45119125 45119335 -197545018 + L1MA4A LINE L1 5127 5344 -959 2082 108 3 0 chr1 45119335 45119632 -197544721 + AluSq SINE Alu 1 298 -15 4434 100 11 50 chr1 45119632 45120266 -197544087 + L1MA4A LINE L1 5344 5948 -355 1094 128 0 0 chr1 45120267 45120423 -197543930 + AluSg/x SINE Alu 133 288 -22 2006 122 19 53 chr1 45120425 45120556 -197543797 + L1MA4A LINE L1 5936 6070 -233 2049 115 6 13 chr1 45120556 45120869 -197543484 - AluSx SINE Alu -1 311 1 2006 122 19 53 chr1 45120869 45121113 -197543240 + L1MA4A LINE L1 6070 6298 -5 835 193 52 149 chr1 45121113 45121501 -197542852 + L1MD2 LINE L1 5885 6234 -8 826 317 70 16 chr1 45121540 45121912 -197542441 + L1ME4a LINE L1 5580 5971 -150 2278 87 0 0 chr1 45121932 45122232 -197542121 - AluY SINE Alu -10 301 2 23 0 0 0 chr1 45122236 45122259 -197542094 + AT_rich Low_complexity Low_complexity 1 23 0 2182 204 25 12 chr1 45122673 45123159 -197541194 - L1MB3 LINE L1 -2 6181 5690 312 224 56 19 chr1 45123231 45123338 -197541015 - LTR16A1 LTR ERVL -290 167 57 344 250 23 0 chr1 45123354 45123442 -197540911 - L1MB3 LINE L1 -400 5721 5632 241 220 101 46 chr1 45123783 45123892 -197540461 + L1M3e LINE L1 831 945 -6085 367 213 0 0 chr1 45124031 45124106 -197540247 - MIR SINE MIR -11 251 177 214 204 82 0 chr1 45124206 45124255 -197540098 - MIR SINE MIR -81 181 129 1892 121 68 16 chr1 45124421 45124743 -197539610 - MER44D DNA MER2_type 0 609 1 239 229 0 0 chr1 45124761 45124809 -197539544 + (CTCA)n Simple_repeat Simple_repeat 4 51 0 6465 42 8 0 chr1 45124828 45125593 -197538760 - L1PA5 LINE L1 -2 6152 5382 233 290 110 10 chr1 45125598 45125698 -197538655 - L2 LINE L2 -13 3300 3191 1526 158 106 17 chr1 45126028 45126320 -197538033 - MER7A DNA MER2_type 0 346 31 260 140 20 0 chr1 45127215 45127265 -197537088 - L1MD3 LINE L1 -19 7976 7926 2866 248 45 73 chr1 45127270 45127371 -197536982 + L1M4b LINE L1 11 113 -6746 1299 193 91 4 chr1 45127371 45127646 -197536707 + AluJb SINE Alu 1 299 -13 2866 248 45 73 chr1 45127646 45128517 -197535836 + L1M4b LINE L1 113 956 -5903 251 211 39 0 chr1 45128757 45128809 -197535544 + L1M4b LINE L1 1170 1223 -5636 2237 220 84 35 chr1 45129030 45129210 -197535143 + L1M4b LINE L1 1190 1360 -5495 207 0 0 0 chr1 45129210 45129233 -197535120 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2237 220 84 35 chr1 45129233 45129846 -197534507 + L1M4b LINE L1 1360 2022 -4833 2159 89 0 0 chr1 45129873 45130155 -197534198 + AluSc SINE Alu 1 282 -27 732 260 16 47 chr1 45130170 45130428 -197533925 - L1M4 LINE L1 -2412 3734 3485 2042 104 0 0 chr1 45130432 45130740 -197533613 - AluY SINE Alu 0 308 1 1542 153 0 33 chr1 45130823 45131123 -197533230 - AluSx SINE Alu -4 308 19 437 303 123 18 chr1 45131237 45131465 -197532888 + L2 LINE L2 2590 2841 -473 272 283 22 33 chr1 45131805 45131897 -197532456 + L2 LINE L2 3141 3231 -41 937 232 34 54 chr1 45134021 45134052 -197530301 - L1ME4a LINE L1 -254 5867 5837 2180 69 0 14 chr1 45134052 45134370 -197529983 - AluY SINE Alu 0 314 1 937 232 34 54 chr1 45134370 45134690 -197529663 - L1ME4a LINE L1 -284 5837 5521 697 111 0 0 chr1 45134936 45135026 -197529327 - 5S rRNA rRNA -31 90 1 189 343 37 0 chr1 45135088 45135196 -197529157 + L2 LINE L2 1597 1708 -1606 714 328 38 8 chr1 45135204 45135466 -197528887 + L2 LINE L2 1135 1404 -1910 519 282 76 82 chr1 45135693 45135897 -197528456 - L1MC4a LINE L1 -1913 5895 5691 2391 82 3 7 chr1 45135897 45136203 -197528150 - AluSc SINE Alu -4 305 1 519 282 76 82 chr1 45136203 45136487 -197527866 - L1MC4a LINE L1 -2117 5691 5410 2347 267 51 28 chr1 45136521 45137564 -197526789 + L1M4c LINE L1 913 2129 -4434 4033 228 42 36 chr1 45137569 45138492 -197525861 + L1MEc LINE L1 1730 2647 -3568 2314 93 0 13 chr1 45138492 45138804 -197525549 - AluSp SINE Alu -5 308 1 2296 105 0 3 chr1 45138804 45139107 -197525246 - AluSp SINE Alu -11 302 1 4033 228 42 36 chr1 45139107 45139787 -197524566 + L1MEc LINE L1 2950 3298 -2917 2518 63 0 0 chr1 45139841 45140143 -197524210 - AluY SINE Alu -9 302 1 989 190 0 0 chr1 45140217 45140380 -197523973 - AluJb SINE Alu -16 296 134 1701 122 72 47 chr1 45140380 45140532 -197523821 - AluSx SINE Alu -15 297 133 1848 110 0 0 chr1 45140532 45140777 -197523576 - AluSg SINE Alu -6 304 60 1701 122 72 47 chr1 45140777 45140902 -197523451 - AluSx SINE Alu -179 133 13 261 0 0 0 chr1 45141704 45141733 -197522620 + (A)n Simple_repeat Simple_repeat 1 29 0 823 276 44 9 chr1 45141804 45142032 -197522321 + MIR SINE MIR 1 236 -26 484 164 0 0 chr1 45143316 45143389 -197520964 - MER47B DNA MER2_type -4 414 342 302 108 72 72 chr1 45143387 45143470 -197520883 - MER47B DNA MER2_type -162 256 174 * 2093 141 18 37 chr1 45143575 45144030 -197520323 - pTR5 LTR ERV1 -1240 1198 753 469 148 11 34 chr1 45144030 45144118 -197520235 - MSTA LTR MaLR -342 86 1 9063 188 21 8 chr1 45144118 45145209 -197519144 - MSTA-int LTR MaLR 0 1651 529 2270 138 39 33 chr1 45145209 45145571 -197518782 + THE1B LTR MaLR 1 364 0 9063 188 21 8 chr1 45145571 45146106 -197518247 - MSTA-int LTR MaLR -1122 529 3 2268 139 131 11 chr1 45146107 45146489 -197517864 - MSTA LTR MaLR 0 428 1 2942 216 63 19 chr1 45146489 45146676 -197517677 - L1M4 LINE L1 -1185 4961 4784 2426 86 0 0 chr1 45146676 45146978 -197517375 - AluY SINE Alu -9 302 1 2942 216 63 19 chr1 45146978 45147586 -197516767 - L1M4 LINE L1 -1362 4784 4131 1863 255 27 18 chr1 45147590 45148180 -197516173 - L1ME LINE L1 -353 5809 5218 240 35 0 0 chr1 45148182 45148211 -197516142 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 534 203 119 8 chr1 45148210 45148373 -197515980 - FLAM_A SINE Alu 0 176 1 1899 105 7 18 chr1 45148455 45148740 -197515613 - AluY SINE Alu -29 282 1 4547 164 28 22 chr1 45148858 45149590 -197514763 - L1MB3 LINE L1 -130 6053 5302 2120 134 3 0 chr1 45149590 45149889 -197514464 - AluSq SINE Alu -13 300 1 4547 164 28 22 chr1 45149889 45150504 -197513849 - L1MB3 LINE L1 -881 5302 4692 * 43028 36 28 1 chr1 45150498 45156488 -197507865 - L1PA2 LINE L1 -1 6154 2 2848 203 35 17 chr1 45156505 45157194 -197507159 - L1 LINE L1 -1437 4709 4005 216 0 0 0 chr1 45157562 45157586 -197506767 + (A)n Simple_repeat Simple_repeat 1 24 0 2053 133 0 3 chr1 45157702 45157996 -197506357 - AluSx SINE Alu -19 293 1 333 234 255 14 chr1 45158173 45158314 -197506039 + MIR SINE MIR 42 216 -46 2029 125 9 67 chr1 45158343 45158537 -197505816 - MER44D DNA MER2_type -1893 598 394 2171 101 7 0 chr1 45158537 45158823 -197505530 + AluSx SINE Alu 1 288 -24 279 0 0 0 chr1 45158826 45158857 -197505496 + (CA)n Simple_repeat Simple_repeat 2 32 0 2029 125 9 67 chr1 45158857 45159002 -197505351 - MER44D DNA MER2_type -2099 392 5 198 71 0 0 chr1 45159536 45159564 -197504789 + (TG)n Simple_repeat Simple_repeat 2 29 0 400 274 42 37 chr1 45159795 45160012 -197504341 - L1ME2 LINE L1 -207 5946 5729 609 287 92 18 chr1 45160044 45160316 -197504037 - HAL1 LINE L1 -471 2036 1745 614 314 76 14 chr1 45160538 45160958 -197503395 - L1ME2 LINE L1 -903 5226 4781 571 332 36 0 chr1 45161094 45161344 -197503009 - L1ME2 LINE L1 -1909 4220 3962 1049 144 6 52 chr1 45161381 45161555 -197502798 - FRAM SINE Alu 0 166 1 269 308 74 82 chr1 45161592 45161995 -197502358 - L1ME2 LINE L1 -2365 3764 3365 1915 141 7 3 chr1 45162254 45162538 -197501815 + AluJo SINE Alu 1 285 -27 921 256 68 37 chr1 45162584 45162821 -197501532 - L1ME2 LINE L1 -4729 1581 1353 2390 146 18 83 chr1 45162821 45163228 -197501125 - LOR1b LTR ERV1 0 461 90 2365 91 0 13 chr1 45163228 45163535 -197500818 + AluY SINE Alu 1 303 -8 2390 146 18 83 chr1 45163535 45163620 -197500733 - LOR1b LTR ERV1 -371 90 1 921 256 68 37 chr1 45163620 45163907 -197500446 - L1ME2 LINE L1 -4957 1353 989 1847 166 3 3 chr1 45163911 45164207 -197500146 - AluJb SINE Alu 0 312 17 2201 55 4 0 chr1 45164207 45164467 -197499886 - L1P2 LINE L1 -490 5664 5396 2408 90 0 0 chr1 45164467 45164778 -197499575 - AluY SINE Alu 0 311 1 2201 55 4 0 chr1 45164778 45164838 -197499515 - L1P2 LINE L1 -758 5396 5338 399 127 0 0 chr1 45164858 45164921 -197499432 + (CA)n Simple_repeat Simple_repeat 2 64 0 323 280 34 17 chr1 45165985 45166214 -197498139 + (CAT)n Simple_repeat Simple_repeat 1 232 0 477 264 126 56 chr1 45166719 45167255 -197497098 + L2 LINE L2 2640 3220 -93 3133 216 60 7 chr1 45168950 45169712 -197494641 - L1M4 LINE L1 -1911 4235 3433 656 199 149 3 chr1 45169735 45170056 -197494297 - L1M4 LINE L1 -2954 3192 2780 1445 129 18 132 chr1 45170058 45170677 -197493676 + MER4C LTR ERV1 3 465 0 1014 277 33 3 chr1 45170677 45170984 -197493369 - L1M4 LINE L1 -3363 2783 2468 4110 111 0 7 chr1 45171761 45172319 -197492034 - MER41A LTR ERV1 0 554 1 257 282 67 13 chr1 45172727 45172883 -197491470 + L1M4 LINE L1 5221 5381 -765 188 341 159 0 chr1 45173067 45173193 -197491160 + MIR3 SINE MIR 15 160 -48 887 67 109 0 chr1 45173317 45173436 -197490917 + AluY SINE Alu 1 132 -179 390 214 124 0 chr1 45173447 45173536 -197490817 + Charlie8 DNA MER1_type 115 214 -2203 363 276 0 0 chr1 45173903 45173990 -197490363 + MLT1I LTR MaLR 320 406 -3 514 268 134 29 chr1 45174005 45174214 -197490139 - MIR SINE MIR 0 262 32 2790 246 31 31 chr1 45174632 45174736 -197489617 - L1ME3A LINE L1 -123 6047 5945 4406 170 48 60 chr1 45174736 45175702 -197488651 + LTR13 LTR ERVK 1 954 0 2790 246 31 31 chr1 45175702 45176443 -197487910 - L1ME3A LINE L1 -225 5945 5198 22 0 0 0 chr1 45176456 45176478 -197487875 + AT_rich Low_complexity Low_complexity 1 22 0 481 204 26 9 chr1 45176735 45176848 -197487505 + LTR13 LTR ERVK 752 866 -141 380 335 87 4 chr1 45176874 45177116 -197487237 - L2 LINE L2 -2281 1033 772 5052 143 53 38 chr1 45177135 45178192 -197486161 + L1MA6 LINE L1 5217 6300 0 279 0 0 0 chr1 45178225 45178256 -197486097 + (CA)n Simple_repeat Simple_repeat 2 32 0 224 250 35 21 chr1 45178748 45178892 -197485461 + (TA)n Simple_repeat Simple_repeat 1 146 0 1068 121 61 0 chr1 45178902 45179067 -197485286 - L1PA15 LINE L1 -4 6161 5987 617 371 45 20 chr1 45179077 45179479 -197484874 - L2 LINE L2 -2783 531 120 1231 269 49 21 chr1 45181618 45182087 -197482266 + L1M4 LINE L1 4561 5042 -1104 877 224 58 4 chr1 45182123 45182364 -197481989 + Charlie5 DNA MER1_type 2371 2624 0 331 304 140 8 chr1 45182367 45182617 -197481736 + L1M4 LINE L1 5039 5321 -825 204 125 0 0 chr1 45182672 45182704 -197481649 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2444 76 3 0 chr1 45182792 45183094 -197481259 - AluSx SINE Alu -8 304 2 998 156 134 22 chr1 45183116 45183340 -197481013 + L1MB2 LINE L1 5921 6169 -2 23 0 0 0 chr1 45183715 45183738 -197480615 + GC_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr1 45184289 45184324 -197480029 + AT_rich Low_complexity Low_complexity 1 35 0 366 204 80 18 chr1 45185740 45185853 -197478500 + Charlie7 DNA MER1_type 2493 2612 0 470 311 226 8 chr1 45185866 45186220 -197478133 + L2 LINE L2 2831 3261 -52 987 228 15 10 chr1 45186324 45186530 -197477823 + MER3 DNA MER1_type 1 207 -2 240 315 163 22 chr1 45186534 45186626 -197477727 + L2 LINE L2 3150 3254 -18 41 0 0 0 chr1 45186960 45187001 -197477352 + AT_rich Low_complexity Low_complexity 1 41 0 470 271 271 0 chr1 45187083 45187275 -197477078 + MIR SINE MIR 12 255 -7 261 237 156 29 chr1 45187987 45188141 -197476212 - MIR SINE MIR -60 148 18 765 268 197 22 chr1 45188221 45188632 -197475721 + L2 LINE L2 2831 3313 0 824 192 83 10 chr1 45188964 45189157 -197475196 + MIR SINE MIR 35 241 -21 215 385 13 0 chr1 45189196 45189274 -197475079 + MIR SINE MIR 63 141 -67 2066 121 3 0 chr1 45189285 45189574 -197474779 + AluSx SINE Alu 1 290 -22 65 14 0 0 chr1 45189574 45189646 -197474707 + AT_rich Low_complexity Low_complexity 1 72 0 2082 80 29 41 chr1 45190076 45190229 -197474124 + LOR1-int LTR ERV1 1405 1558 -6562 2179 78 0 62 chr1 45190229 45190551 -197473802 + AluY SINE Alu 1 302 -9 2082 80 29 41 chr1 45190551 45190811 -197473542 + LOR1-int LTR ERV1 1558 1813 -6307 2207 93 0 13 chr1 45190811 45191113 -197473240 + AluY SINE Alu 1 298 -13 5970 121 70 4 chr1 45191119 45192140 -197472213 - LOR1-int LTR ERV1 -6830 1290 203 1058 114 18 12 chr1 45192150 45192317 -197472036 - LOR1-int LTR ERV1 -7749 371 204 248 360 45 0 chr1 45192545 45192656 -197471697 + L2 LINE L2 3153 3268 -4 2128 121 0 3 chr1 45192659 45192965 -197471388 - AluSx SINE Alu -7 305 1 551 249 85 28 chr1 45192967 45193144 -197471209 - MIR SINE MIR -65 197 11 * 958 266 154 17 chr1 45193142 45193434 -197470919 - L2 LINE L2 0 3313 3062 186 43 0 0 chr1 45193434 45193457 -197470896 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 958 266 154 17 chr1 45193457 45193673 -197470680 - L2 LINE L2 -251 3062 2635 349 263 8 51 chr1 45194349 45194467 -197469886 + MER33 DNA MER1_type 5 117 -207 815 94 0 47 chr1 45194468 45194596 -197469757 + FLAM_C SINE Alu 13 134 -9 2032 105 4 0 chr1 45194795 45195072 -197469281 - AluSg SINE Alu -31 279 2 552 265 79 92 chr1 45195563 45195891 -197468462 - L2 LINE L2 -2 3270 2947 319 304 6 39 chr1 45196179 45196360 -197467993 + (TTGGGG)n Simple_repeat Simple_repeat 5 179 0 398 317 0 30 chr1 45196373 45196540 -197467813 + (CTGGGG)n Simple_repeat Simple_repeat 5 166 0 221 285 19 0 chr1 45197347 45197422 -197466931 - MIR SINE MIR -62 146 105 240 339 213 5 chr1 45197928 45198149 -197466204 - L2 LINE L2 -881 2433 2167 356 137 0 5 chr1 45201379 45201440 -197462913 - Alu SINE Alu -250 52 1 1085 138 0 0 chr1 45201772 45201939 -197462414 - AluSg/x SINE Alu -14 298 132 199 357 64 39 chr1 45202309 45202592 -197461761 + L2 LINE L2 934 1223 -2091 921 112 0 8 chr1 45202613 45202747 -197461606 + FLAM_C SINE Alu 1 133 -10 297 361 0 0 chr1 45203182 45203290 -197461063 - L2 LINE L2 -246 3026 2919 187 259 0 37 chr1 45203985 45204039 -197460314 + MIR SINE MIR 92 143 -119 2074 101 0 17 chr1 45204073 45204369 -197459984 + AluSx SINE Alu 1 291 -21 732 208 40 0 chr1 45204630 45204779 -197459574 - MIR SINE MIR -63 199 45 2533 52 0 0 chr1 45204843 45205153 -197459200 - AluY SINE Alu -1 310 1 188 288 62 48 chr1 45206032 45206178 -197458175 + L2 LINE L2 2129 2276 -1038 315 309 88 31 chr1 45206386 45206580 -197457773 + L2 LINE L2 2631 2835 -479 213 332 128 32 chr1 45207120 45207240 -197457113 - L2 LINE L2 -50 3222 3115 1677 156 17 3 chr1 45207240 45207528 -197456825 + AluJo SINE Alu 21 312 0 2155 121 0 10 chr1 45207529 45207842 -197456511 + AluSq SINE Alu 1 310 -3 213 332 128 32 chr1 45207842 45207906 -197456447 - L2 LINE L2 -156 3116 3018 2277 93 3 0 chr1 45208072 45208373 -197455980 + AluSx SINE Alu 1 302 -10 231 331 96 28 chr1 45208467 45208718 -197455635 - L2 LINE L2 -338 2976 2709 374 268 10 0 chr1 45209721 45209818 -197454535 - MIR SINE MIR -78 184 87 320 306 153 20 chr1 45210528 45210776 -197453577 + L2 LINE L2 2487 2767 -547 1878 150 3 0 chr1 45212584 45212877 -197451476 + AluJo SINE Alu 1 294 -18 2184 106 10 0 chr1 45213051 45213354 -197450999 - AluSx SINE Alu -6 306 1 265 235 0 0 chr1 45213724 45213775 -197450578 - L2 LINE L2 -8 3305 3255 1208 191 42 39 chr1 45213810 45214093 -197450260 - L1MB5 LINE L1 -18 6156 5873 247 273 52 0 chr1 45214093 45214170 -197450183 - MIR SINE MIR -78 184 104 407 292 146 0 chr1 45214261 45214432 -197449921 - MER91A DNA MER1_type 0 196 1 4633 264 93 34 chr1 45214465 45215710 -197448643 - L2 LINE L2 -87 3226 2056 2127 118 20 0 chr1 45215710 45216015 -197448338 - AluSx SINE Alu 0 312 2 4633 264 93 34 chr1 45216015 45216033 -197448320 - L2 LINE L2 -1257 2056 2041 2316 93 0 3 chr1 45216033 45216345 -197448008 - AluY SINE Alu 0 311 1 4633 264 93 34 chr1 45216345 45217347 -197447006 - L2 LINE L2 -1272 2041 825 2251 91 3 10 chr1 45217350 45217659 -197446694 - AluSc SINE Alu -2 307 1 183 42 0 0 chr1 45217666 45217690 -197446663 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1570 143 64 0 chr1 45217696 45217961 -197446392 - AluJo SINE Alu -30 282 1 196 239 0 0 chr1 45217964 45218010 -197446343 - L2 LINE L2 -2483 831 786 232 265 60 36 chr1 45218087 45218170 -197446183 - MIR SINE MIR -121 87 28 317 261 0 0 chr1 45218304 45218369 -197445984 - MLT1K LTR MaLR -508 80 16 1800 149 19 32 chr1 45218653 45218961 -197445392 + AluJb SINE Alu 1 304 -8 1080 126 0 0 chr1 45220346 45220525 -197443828 + FRAM SINE Alu 1 178 0 290 252 244 9 chr1 45221027 45221142 -197443211 + MIR SINE MIR 15 156 -106 1716 88 73 36 chr1 45221149 45221451 -197442902 + AluSx SINE Alu 1 312 0 324 0 0 0 chr1 45221923 45221959 -197442394 + (CA)n Simple_repeat Simple_repeat 2 37 0 2146 127 0 6 chr1 45222657 45222971 -197441382 - AluSx SINE Alu 0 312 1 1905 133 118 0 chr1 45223660 45223983 -197440370 + MER46B DNA MER2_type 1 236 0 1450 260 65 22 chr1 45223998 45224490 -197439863 - L1MC4a LINE L1 -1856 5952 5440 2240 97 0 3 chr1 45224501 45224809 -197439544 - AluSx SINE Alu -5 307 1 391 278 134 43 chr1 45226389 45226576 -197437777 + MIR3 SINE MIR 1 204 -4 508 128 64 0 chr1 45227279 45227373 -197436980 + L1MB2 LINE L1 5949 6048 -123 812 144 0 0 chr1 45227414 45227532 -197436821 + FLAM_C SINE Alu 1 118 -15 441 181 0 113 chr1 45227574 45227665 -197436688 + L1MB4 LINE L1 6063 6136 -44 2196 79 7 0 chr1 45227665 45227956 -197436397 + AluSg SINE Alu 2 294 -16 441 181 0 113 chr1 45227956 45227997 -197436356 + L1MB4 LINE L1 6136 6180 0 296 266 0 0 chr1 45228209 45228273 -197436080 - L2 LINE L2 -2 3270 3207 308 306 28 0 chr1 45228297 45228405 -197435948 + MIR SINE MIR 127 237 -25 798 271 129 0 chr1 45229001 45229226 -197435127 + MIR SINE MIR 8 261 -1 186 264 165 0 chr1 45229233 45229324 -197435029 - L2 LINE L2 -843 2471 2366 216 293 74 94 chr1 45229711 45230063 -197434290 + L2 LINE L2 2830 3174 -98 847 142 0 8 chr1 45230173 45230307 -197434046 - FLAM_C SINE Alu 0 133 1 206 293 74 94 chr1 45230738 45231090 -197433263 + L2 LINE L2 2830 3174 -98 847 142 0 8 chr1 45231200 45231334 -197433019 - FLAM_C SINE Alu 0 133 1 181 339 164 0 chr1 45231519 45231690 -197432663 - L2 LINE L2 -1417 1897 1699 331 369 119 6 chr1 45233314 45233802 -197430551 - L2 LINE L2 -337 2977 2435 185 143 29 0 chr1 45235128 45235163 -197429190 - L2 LINE L2 -91 3222 3187 703 304 39 0 chr1 45237387 45237617 -197426736 + MIR SINE MIR 24 262 0 201 175 0 0 chr1 45237978 45238018 -197426335 + CT-rich Low_complexity Low_complexity 3 42 0 322 274 108 25 chr1 45238199 45238356 -197425997 + MIR SINE MIR 40 209 -53 207 0 0 0 chr1 45241153 45241176 -197423177 + (TG)n Simple_repeat Simple_repeat 2 24 0 2387 101 0 7 chr1 45241645 45241951 -197422402 + AluSx SINE Alu 1 304 -8 2130 109 3 14 chr1 45242487 45242781 -197421572 + AluSg SINE Alu 1 291 -19 40 37 0 0 chr1 45243004 45243058 -197421295 + AT_rich Low_complexity Low_complexity 1 54 0 299 179 15 0 chr1 45243068 45243135 -197421218 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 26 0 0 0 chr1 45243360 45243386 -197420967 + AT_rich Low_complexity Low_complexity 1 26 0 1901 189 15 57 chr1 45243390 45243850 -197420503 - MER31A LTR ERV1 -43 442 2 327 268 0 0 chr1 45244597 45244668 -197419685 - L2 LINE L2 0 3313 3243 2438 80 7 0 chr1 45246294 45246595 -197417758 + AluY SINE Alu 1 303 -8 23 33 0 0 chr1 45246820 45246850 -197417503 + AT_rich Low_complexity Low_complexity 1 30 0 2280 91 16 3 chr1 45247573 45247882 -197416471 + AluSq SINE Alu 1 313 0 2290 186 56 82 chr1 45248244 45248384 -197415969 - Tigger6a DNA MER2_type -515 1082 940 2119 62 4 0 chr1 45248384 45248643 -197415710 + AluY SINE Alu 49 308 -3 2506 78 0 0 chr1 45248653 45248960 -197415393 + AluY SINE Alu 1 307 -4 2290 186 56 82 chr1 45248960 45249500 -197414853 - Tigger6a DNA MER2_type -666 931 409 968 172 18 6 chr1 45249508 45249671 -197414682 - FRAM SINE Alu -15 161 1 2584 39 0 0 chr1 45249691 45249977 -197414376 - AluY SINE Alu -21 290 5 1792 153 75 16 chr1 45249977 45250350 -197414003 - Tigger6a DNA MER2_type -667 416 22 1752 160 38 10 chr1 45250425 45250541 -197413812 + AluJo SINE Alu 1 112 -200 378 0 0 0 chr1 45250541 45250583 -197413770 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1752 160 38 10 chr1 45250583 45250754 -197413599 + AluJo SINE Alu 112 296 -16 364 278 114 22 chr1 45251603 45251794 -197412559 - MIR SINE MIR -44 218 9 2425 97 10 0 chr1 45252019 45252328 -197412025 + AluSx SINE Alu 1 312 0 436 269 28 7 chr1 45252449 45252594 -197411759 + HAL1 LINE L1 1629 1776 -731 252 313 84 48 chr1 45253988 45254215 -197410138 + L2 LINE L2 2313 2547 -767 245 257 68 87 chr1 45254433 45254639 -197409714 + L2 LINE L2 2853 3054 -218 381 310 84 7 chr1 45254794 45254936 -197409417 - MIR SINE MIR -70 192 40 1854 160 14 0 chr1 45255028 45255315 -197409038 + AluSx SINE Alu 5 295 -17 395 250 167 13 chr1 45256122 45256278 -197408075 - MIR SINE MIR -81 181 2 967 221 19 24 chr1 45256469 45256682 -197407671 - MER20 DNA MER1_type -1 218 7 216 346 132 19 chr1 45257219 45257378 -197406975 - MER5B DNA MER1_type 0 178 2 221 254 17 0 chr1 45257386 45257445 -197406908 - MIR SINE MIR -63 145 86 801 178 7 7 chr1 45258267 45258402 -197405951 + MER2 DNA MER2_type 4 138 -207 1985 146 9 67 chr1 45258404 45258746 -197405607 + MER1B DNA MER1_type 1 322 -17 544 184 119 55 chr1 45258752 45258953 -197405400 + MER2 DNA MER2_type 132 345 0 285 118 78 0 chr1 45259052 45259103 -197405250 - MIR SINE MIR -61 147 93 360 217 0 0 chr1 45261260 45261352 -197403001 + G-rich Low_complexity Low_complexity 2 93 0 200 118 20 59 chr1 45261358 45261409 -197402944 + (CGGGG)n Simple_repeat Simple_repeat 5 53 0 240 298 48 16 chr1 45262140 45262264 -197402089 - L1ME3A LINE L1 -6 6233 6106 688 239 53 66 chr1 45262280 45262998 -197401355 - L1ME3A LINE L1 -266 5973 5201 373 290 78 6 chr1 45263024 45263244 -197401109 - L1ME3A LINE L1 -1807 4408 4157 2291 104 0 3 chr1 45263245 45263543 -197400810 + AluSc SINE Alu 1 297 -12 332 246 219 46 chr1 45263598 45263927 -197400426 - L1ME3A LINE L1 -4579 1817 1432 251 247 11 21 chr1 45263993 45264086 -197400267 - LTR38-int LTR ERV1 -360 1426 1335 208 0 62 0 chr1 45264202 45264234 -197400119 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1592 185 22 4 chr1 45264238 45264514 -197399839 - AluJo SINE Alu -30 282 2 397 294 0 34 chr1 45264538 45264715 -197399638 - L1ME3A LINE L1 -5031 1174 1004 779 331 151 29 chr1 45264726 45265110 -197399243 - MER115 DNA AcHobo -262 431 1 209 147 0 0 chr1 45265179 45265221 -197399132 + MIR SINE MIR 110 150 -112 1664 272 100 17 chr1 45265266 45266302 -197398051 - L2 LINE L2 0 3313 2176 1608 125 85 44 chr1 45266302 45266574 -197397779 - MER1B DNA MER1_type 0 339 57 433 273 37 42 chr1 45266597 45266749 -197397604 - L2 LINE L2 -1132 2182 2030 7546 37 6 0 chr1 45266749 45268002 -197396351 + L1PA5 LINE L1 4891 6148 -6 433 273 37 42 chr1 45268002 45268065 -197396288 - L2 LINE L2 -1284 2030 1968 206 306 90 18 chr1 45268102 45268213 -197396140 - L2 LINE L2 -16 3256 3138 183 355 71 18 chr1 45268343 45268512 -197395841 + L2 LINE L2 2197 2374 -940 258 98 33 16 chr1 45268619 45268630 -197395723 + (TA)n Simple_repeat Simple_repeat 2 11 -52 2305 94 3 0 chr1 45268630 45268918 -197395435 + AluSp SINE Alu 1 289 -24 258 98 33 16 chr1 45268918 45268967 -197395386 + (TA)n Simple_repeat Simple_repeat 11 63 0 568 161 161 50 chr1 45268971 45269151 -197395202 + ORSL DNA AcHobo 64 263 -12 2140 114 7 0 chr1 45269787 45270077 -197394276 - AluSx SINE Alu -20 292 1 766 212 73 18 chr1 45270600 45270825 -197393528 - MIR SINE MIR -6 256 15 678 170 83 29 chr1 45271578 45271863 -197392490 + Tigger5 DNA MER2_type 1 2319 -4 754 276 44 9 chr1 45273147 45273375 -197390978 - MIR SINE MIR -26 236 1 21 0 0 0 chr1 45273451 45273472 -197390881 + AT_rich Low_complexity Low_complexity 1 21 0 1703 123 72 47 chr1 45274274 45274399 -197389954 + AluSx SINE Alu 13 133 -179 1856 110 0 0 chr1 45274399 45274644 -197389709 + AluSg SINE Alu 60 304 -6 1703 123 72 47 chr1 45274644 45274795 -197389558 + AluSx SINE Alu 133 296 -16 993 190 0 0 chr1 45274795 45274958 -197389395 + AluJb SINE Alu 134 296 -16 2606 62 0 0 chr1 45275032 45275341 -197389012 + AluY SINE Alu 1 309 -2 288 291 34 16 chr1 45275725 45275903 -197388450 + L1MC/D LINE L1 5519 5699 -422 477 237 121 9 chr1 45275929 45276161 -197388192 + L1M4 LINE L1 2310 2567 -3579 12782 199 50 29 chr1 45276166 45276509 -197387844 - L1MB7 LINE L1 0 6253 5918 1971 165 0 0 chr1 45276509 45276806 -197387547 - AluJb SINE Alu -15 297 1 12782 199 50 29 chr1 45276806 45278337 -197386016 - L1MB7 LINE L1 -335 5918 4420 2543 134 50 29 chr1 45278337 45278754 -197385599 - MSTB LTR MaLR 0 426 1 12782 199 50 29 chr1 45278754 45278968 -197385385 - L1MB7 LINE L1 -1833 4420 4212 2605 59 0 0 chr1 45278968 45279271 -197385082 - AluY SINE Alu -8 303 1 12782 199 50 29 chr1 45279271 45280007 -197384346 - L1MB7 LINE L1 -2041 4212 3492 2487 76 0 0 chr1 45280007 45280308 -197384045 + AluY SINE Alu 1 301 -10 12782 199 50 29 chr1 45280308 45281041 -197383312 - L1MB7 LINE L1 -2761 3492 2775 2313 105 0 3 chr1 45281041 45281345 -197383008 + AluSp SINE Alu 1 303 -10 2367 93 0 10 chr1 45281345 45281655 -197382698 + AluSp SINE Alu 1 308 -5 12782 199 50 29 chr1 45281655 45282578 -197381775 - L1MB7 LINE L1 -3477 2776 1730 2308 267 51 27 chr1 45282583 45283625 -197380728 - L1M4c LINE L1 -4434 2129 913 484 282 76 82 chr1 45283659 45283943 -197380410 + L1MC4a LINE L1 5410 5691 -2117 2481 82 3 0 chr1 45283943 45284247 -197380106 + AluSc SINE Alu 1 305 -4 484 282 76 82 chr1 45284247 45284451 -197379902 + L1MC4a LINE L1 5691 5895 -1913 609 321 0 9 chr1 45284678 45284899 -197379454 - L2 LINE L2 -1910 1404 1186 695 111 0 0 chr1 45285118 45285208 -197379145 + 5S rRNA rRNA 1 90 -31 954 238 34 51 chr1 45285453 45285772 -197378581 + L1ME4a LINE L1 5521 5837 -284 2311 69 0 14 chr1 45285772 45286090 -197378263 + AluY SINE Alu 1 314 0 954 238 34 51 chr1 45286090 45286121 -197378232 + L1ME4a LINE L1 5837 5867 -254 302 202 32 53 chr1 45288266 45288360 -197375993 - L2 LINE L2 -64 3249 3158 509 267 153 40 chr1 45288531 45288909 -197375444 - L2 LINE L2 -374 2940 2520 1977 166 0 7 chr1 45288910 45289217 -197375136 + AluJo SINE Alu 8 312 0 220 338 106 19 chr1 45289504 45289664 -197374689 - L2 LINE L2 -515 2799 2626 399 316 170 22 chr1 45289720 45290137 -197374216 - L2 LINE L2 -939 2375 1897 1056 85 0 0 chr1 45290188 45290317 -197374036 - AluSg/x SINE Alu -15 297 169 2428 76 3 0 chr1 45290325 45290614 -197373739 - AluSp SINE Alu -23 290 1 453 211 121 30 chr1 45290849 45291015 -197373338 + L1MB8 LINE L1 2973 3153 -2993 1291 174 0 28 chr1 45291245 45291463 -197372890 + AluJo SINE Alu 85 296 -16 208 241 93 0 chr1 45292042 45292096 -197372257 + L2 LINE L2 3197 3255 -17 303 282 38 30 chr1 45292199 45292330 -197372023 - L3 LINE CR1 -156 1421 1290 299 305 89 30 chr1 45293656 45293859 -197370494 - L2 LINE L2 -1003 2311 2097 2401 106 0 0 chr1 45293892 45294194 -197370159 - AluSx SINE Alu -10 302 1 253 278 8 60 chr1 45294236 45294369 -197369984 + G-rich Low_complexity Low_complexity 6 131 0 999 221 57 16 chr1 45295582 45295826 -197368527 + MIR SINE MIR 3 256 -6 1729 145 71 17 chr1 45295827 45295961 -197368392 + AluJb SINE Alu 1 126 -186 2492 57 0 10 chr1 45295961 45296292 -197368061 + AluY SINE Alu 1 311 0 1729 145 71 17 chr1 45296292 45296453 -197367900 + AluJb SINE Alu 126 312 0 244 335 0 20 chr1 45297472 45297682 -197366671 + (TGAA)n Simple_repeat Simple_repeat 1 205 0 2519 67 0 0 chr1 45298570 45298870 -197365483 + AluY SINE Alu 1 300 -11 651 269 97 18 chr1 45299556 45299783 -197364570 + MIR SINE MIR 1 245 -17 543 315 145 14 chr1 45300045 45300492 -197363861 - L2 LINE L2 -130 3142 2637 7752 178 40 39 chr1 45300499 45301732 -197362621 + L1MB8 LINE L1 3371 4601 -1577 2413 107 0 0 chr1 45301732 45302040 -197362313 + AluSc SINE Alu 1 308 -1 2266 67 46 11 chr1 45302049 45302334 -197362019 - AluY SINE Alu -16 295 1 7752 178 40 39 chr1 45302334 45303511 -197360842 + L1MB8 LINE L1 4608 5806 -372 1971 167 0 0 chr1 45303511 45303804 -197360549 + AluJb SINE Alu 1 293 -19 7752 178 40 39 chr1 45303804 45304169 -197360184 + L1MB8 LINE L1 5806 6169 -9 2285 91 9 35 chr1 45304175 45304494 -197359859 - AluY SINE Alu 0 311 1 800 222 58 58 chr1 45304713 45304906 -197359447 - MIR SINE MIR 0 262 67 2107 124 0 13 chr1 45304906 45305205 -197359148 - AluJo SINE Alu -17 295 1 800 222 58 58 chr1 45305205 45305272 -197359081 - MIR SINE MIR -194 68 2 559 284 132 5 chr1 45306242 45306446 -197357907 + MIR SINE MIR 13 242 -20 2299 97 0 23 chr1 45306558 45306858 -197357495 + AluSg SINE Alu 1 293 -17 241 276 39 70 chr1 45307900 45307953 -197356400 + L1MC/D LINE L1 5436 5489 -2319 2376 93 0 13 chr1 45307953 45308263 -197356090 + AluSx SINE Alu 1 306 -6 241 276 39 70 chr1 45308263 45308329 -197356024 + L1MC/D LINE L1 5489 5552 -2256 2286 82 3 0 chr1 45308329 45308653 -197355700 - AluSp SINE Alu 0 325 1 241 276 39 70 chr1 45308653 45308687 -197355666 + L1MC/D LINE L1 5552 5586 -2222 558 258 8 0 chr1 45308815 45308947 -197355406 - MER63A DNA MER1_type -24 186 54 2223 108 0 0 chr1 45309231 45309538 -197354815 + AluSg SINE Alu 1 307 0 351 295 209 30 chr1 45309739 45310170 -197354183 - L2 LINE L2 -816 2498 1991 1700 271 63 55 chr1 45310193 45310757 -197353596 - L2 LINE L2 -410 2904 2331 2348 91 0 19 chr1 45310757 45311064 -197353289 + AluSq SINE Alu 2 302 -11 1700 271 63 55 chr1 45311064 45311210 -197353143 - L2 LINE L2 -983 2331 2188 2161 135 0 7 chr1 45311684 45311987 -197352366 - AluSx SINE Alu -11 301 1 1761 70 0 0 chr1 45312099 45312328 -197352025 - LTR13 LTR ERVK 0 1007 779 561 241 123 0 chr1 45312358 45312521 -197351832 - MER5A DNA MER1_type 0 189 4 584 277 182 5 chr1 45312694 45312914 -197351439 + MIR SINE MIR 1 259 -3 362 287 70 0 chr1 45314335 45314450 -197349903 - L2 LINE L2 0 3272 3150 738 328 92 27 chr1 45316349 45316560 -197347793 + L2 LINE L2 2461 2657 -615 2153 116 13 10 chr1 45316560 45316861 -197347492 - AluSx SINE Alu -10 302 1 738 328 92 27 chr1 45316861 45317210 -197347143 + L2 LINE L2 2657 3058 -214 2492 71 10 13 chr1 45317273 45317583 -197346770 - AluY SINE Alu -2 309 1 1907 159 17 0 chr1 45317666 45317955 -197346398 + AluJo SINE Alu 1 294 -18 311 187 67 13 chr1 45318081 45318156 -197346197 - L1ME4a LINE L1 -112 6009 5931 1320 199 0 27 chr1 45318159 45318421 -197345932 - AluJo SINE Alu -17 295 41 2393 98 0 3 chr1 45318447 45318744 -197345609 - AluSx SINE Alu -16 296 1 318 338 81 20 chr1 45318754 45318902 -197345451 - L1MC4a LINE L1 -1879 5929 5773 584 350 38 38 chr1 45318916 45318960 -197345393 + L2 LINE L2 2348 2391 -923 2356 99 0 3 chr1 45318960 45319262 -197345091 + AluSx SINE Alu 2 302 -10 584 350 38 38 chr1 45319262 45319722 -197344631 + L2 LINE L2 2390 2852 -462 503 305 137 32 chr1 45319803 45320088 -197344265 + L2 LINE L2 2955 3269 -3 911 321 98 22 chr1 45320151 45320236 -197344117 - L2 LINE L2 0 3313 3236 2236 102 10 16 chr1 45320236 45320540 -197343813 + AluSq SINE Alu 1 302 -11 911 321 98 22 chr1 45320540 45321160 -197343193 - L2 LINE L2 -77 3236 2562 345 297 17 34 chr1 45321191 45321309 -197343044 - L2 LINE L2 -591 2723 2608 458 219 38 19 chr1 45321402 45321507 -197342846 - MIR SINE MIR -74 188 82 208 182 23 0 chr1 45321636 45321680 -197342673 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 358 327 68 36 chr1 45322479 45322760 -197341593 + L2 LINE L2 1965 2254 -1060 427 302 75 6 chr1 45322782 45322941 -197341412 + MIR SINE MIR 88 257 -5 206 291 55 0 chr1 45323031 45323086 -197341267 + L2 LINE L2 2324 2381 -933 785 244 85 4 chr1 45323089 45323335 -197341018 - L1ME3 LINE L1 -1 6161 5896 218 330 168 39 chr1 45323580 45323759 -197340594 + L2 LINE L2 3060 3261 -11 238 162 14 68 chr1 45324439 45324513 -197339840 + (CGGGG)n Simple_repeat Simple_repeat 5 74 0 353 344 151 11 chr1 45325129 45325414 -197338939 + L2 LINE L2 2650 2974 -340 216 196 36 18 chr1 45325592 45325648 -197338705 + L2 LINE L2 3255 3311 -2 267 306 45 18 chr1 45325725 45325836 -197338517 + L2 LINE L2 2978 3091 -181 2410 65 0 14 chr1 45326117 45326451 -197337902 + AluY SINE Alu 1 311 0 659 266 39 30 chr1 45326542 45326775 -197337578 - L2 LINE L2 0 3313 3079 2613 135 45 7 chr1 45326786 45327230 -197337123 + MER44D DNA MER2_type 1 516 -89 353 200 0 0 chr1 45327224 45327279 -197337074 + MER44D DNA MER2_type 651 705 0 * 206 216 409 11 chr1 45327281 45327369 -197336984 - L2 LINE L2 -244 3069 2947 331 294 90 39 chr1 45328392 45328647 -197335706 + L2 LINE L2 1750 2017 -1297 2174 111 3 29 chr1 45328674 45328838 -197335515 - AluSx SINE Alu -14 298 144 2182 109 16 0 chr1 45328838 45329141 -197335212 - AluSc SINE Alu -1 308 1 2174 111 3 29 chr1 45329141 45329282 -197335071 - AluSx SINE Alu -168 144 1 833 237 80 18 chr1 45329290 45329514 -197334839 + MIR SINE MIR 12 249 -13 207 289 105 26 chr1 45329611 45329725 -197334628 + L2 LINE L2 2185 2307 -1007 * 490 236 35 35 chr1 45329712 45329856 -197334497 + L2 LINE L2 3169 3312 -1 1144 234 53 36 chr1 45330031 45330390 -197333963 - LTR33 LTR ERVL 0 521 157 480 326 0 7 chr1 45330452 45330599 -197333754 + LTR33 LTR ERVL 1 146 -375 656 162 0 0 chr1 45330670 45330781 -197333572 + AluSg/x SINE Alu 134 244 -68 1987 132 3 64 chr1 45330796 45330981 -197333372 - AluJo SINE Alu -5 307 149 2382 79 3 7 chr1 45330981 45331284 -197333069 - AluY SINE Alu -3 308 7 1987 132 3 64 chr1 45331284 45331425 -197332928 - AluJo SINE Alu -163 149 1 2337 143 71 7 chr1 45331427 45331833 -197332520 + MLT1C LTR MaLR 36 467 0 211 323 48 36 chr1 45331859 45332026 -197332327 + L2 LINE L2 1787 1955 -1359 2015 135 7 0 chr1 45332095 45332383 -197331970 - AluSx SINE Alu -10 302 13 448 255 92 48 chr1 45332801 45332996 -197331357 + MIR SINE MIR 1 211 -51 2598 51 0 0 chr1 45332996 45333292 -197331061 - AluY SINE Alu -15 296 1 448 255 92 48 chr1 45333292 45333347 -197331006 + MIR SINE MIR 211 262 0 318 213 176 28 chr1 45333404 45333512 -197330841 + MIR SINE MIR 23 146 -62 190 298 18 0 chr1 45333676 45333733 -197330620 + MIR SINE MIR 87 144 -64 207 139 0 0 chr1 45334103 45334139 -197330214 + (CCCCG)n Simple_repeat Simple_repeat 5 40 0 315 304 96 44 chr1 45336631 45336881 -197327472 + L2 LINE L2 2128 2390 -924 487 246 32 32 chr1 45337236 45337362 -197326991 + MIR SINE MIR 26 151 -111 619 190 82 0 chr1 45337665 45337963 -197326390 + L1MB7 LINE L1 5824 6178 0 2302 79 21 3 chr1 45337973 45338263 -197326090 + AluY SINE Alu 1 295 -16 218 230 40 0 chr1 45341230 45341304 -197323049 + CT-rich Low_complexity Low_complexity 1 77 0 219 289 13 0 chr1 45341441 45341517 -197322836 + CT-rich Low_complexity Low_complexity 4 80 0 201 74 0 0 chr1 45341976 45342003 -197322350 + (CCCCAG)n Simple_repeat Simple_repeat 1 27 0 215 382 0 0 chr1 45343028 45343138 -197321215 + G-rich Low_complexity Low_complexity 1 110 0 255 114 0 0 chr1 45343210 45343254 -197321099 + (GGCTG)n Simple_repeat Simple_repeat 5 48 0 27 0 0 0 chr1 45343433 45343460 -197320893 + GC_rich Low_complexity Low_complexity 1 27 0 21 100 0 0 chr1 45343465 45343535 -197320818 + GC_rich Low_complexity Low_complexity 1 70 0 354 65 0 0 chr1 45344537 45344583 -197319770 + MER66A LTR ERV1 287 332 -146 2675 46 10 0 chr1 45344608 45344912 -197319441 + AluY SINE Alu 1 307 -4 2475 74 0 0 chr1 45344912 45345210 -197319143 + AluSx SINE Alu 1 298 -14 1621 100 8 37 chr1 45345211 45345452 -197318901 + AluSg/x SINE Alu 74 307 -5 1660 171 33 4 chr1 45345474 45345775 -197318578 + AluJb SINE Alu 1 309 0 309 325 79 0 chr1 45346139 45346265 -197318088 + L2 LINE L2 3134 3269 -3 533 248 224 0 chr1 45346445 45346606 -197317747 + MIR SINE MIR 29 225 -37 193 250 0 0 chr1 45346896 45346936 -197317417 + L2 LINE L2 3233 3272 0 342 302 71 110 chr1 45347127 45347327 -197317026 - L2 LINE L2 -99 3173 2983 2302 109 0 10 chr1 45347327 45347640 -197316713 + AluSq SINE Alu 1 310 -3 342 302 71 110 chr1 45347640 45347851 -197316502 - L2 LINE L2 -289 2983 2765 423 210 34 59 chr1 45347855 45347974 -197316379 - MER5B DNA MER1_type -3 175 60 257 309 62 31 chr1 45349630 45349727 -197314626 - MIR SINE MIR -90 172 73 236 392 40 50 chr1 45349742 45349836 -197314517 - L2 LINE L2 -346 2968 2875 2265 101 0 104 chr1 45349836 45350212 -197314141 - MER1B DNA MER1_type 0 337 1 236 392 40 50 chr1 45350212 45350334 -197314019 - L2 LINE L2 -439 2875 2753 2607 57 0 0 chr1 45350334 45350632 -197313721 - AluY SINE Alu -13 298 1 236 392 40 50 chr1 45350632 45350698 -197313655 - L2 LINE L2 -561 2753 2688 2113 134 10 3 chr1 45350698 45351004 -197313349 + AluSx SINE Alu 1 308 -4 236 392 40 50 chr1 45351004 45351142 -197313211 - L2 LINE L2 -626 2688 2550 245 336 119 7 chr1 45351204 45351347 -197313006 - L2 LINE L2 -940 2374 2216 392 296 43 0 chr1 45351921 45352036 -197312317 - MIR SINE MIR -91 171 52 1091 263 28 0 chr1 45353014 45353261 -197311092 - MIR SINE MIR -3 259 6 234 253 15 15 chr1 45353368 45353435 -197310918 - MIR SINE MIR -108 100 37 342 313 61 39 chr1 45353575 45353587 -197310766 - L2 LINE L2 -220 3052 3042 1956 160 23 0 chr1 45353587 45353887 -197310466 - AluJo SINE Alu 0 312 6 342 313 61 39 chr1 45353887 45354113 -197310240 - L2 LINE L2 -230 3042 2799 1765 174 10 0 chr1 45354285 45354579 -197309774 + AluJb SINE Alu 1 297 -15 1236 169 0 5 chr1 45354719 45354914 -197309439 + AluSq SINE Alu 108 301 -12 622 328 144 41 chr1 45355024 45356003 -197308350 - L2 LINE L2 -561 2753 1674 1900 128 6 67 chr1 45356061 45356388 -197307965 + AluJo SINE Alu 1 307 -5 244 271 0 0 chr1 45356995 45357043 -197307310 - MIR SINE MIR -72 136 89 946 188 69 4 chr1 45360122 45360344 -197304009 - MIR SINE MIR -6 256 16 300 245 209 36 chr1 45365841 45365980 -197298373 + MIR SINE MIR 36 198 -64 236 266 0 38 chr1 45366076 45366155 -197298198 - MIR SINE MIR -120 142 67 728 263 91 22 chr1 45366269 45366425 -197297928 - MIR SINE MIR 0 262 83 2319 96 10 0 chr1 45366425 45366727 -197297626 + AluSp SINE Alu 1 305 -8 728 263 91 22 chr1 45366727 45366802 -197297551 - MIR SINE MIR -179 83 15 1033 188 52 52 chr1 45367109 45367190 -197297163 - MER33 DNA MER1_type -2261 324 244 2815 22 0 10 chr1 45367190 45367504 -197296849 + AluY SINE Alu 1 311 0 1033 188 52 52 chr1 45367504 45367746 -197296607 - MER33 DNA MER1_type -2340 245 1 2500 64 3 0 chr1 45367805 45368103 -197296250 - AluY SINE Alu -12 299 1 361 335 65 67 chr1 45368266 45368669 -197295684 - L2 LINE L2 0 3272 2871 542 315 50 5 chr1 45368689 45368889 -197295464 - MIR SINE MIR -40 222 14 519 308 57 0 chr1 45369256 45369415 -197294938 - MIR SINE MIR -74 188 21 323 250 42 0 chr1 45369520 45369592 -197294761 - MER5A DNA MER1_type 0 189 115 1260 115 0 0 chr1 45369597 45369762 -197294591 - AluSg/x SINE Alu -10 302 138 394 232 48 56 chr1 45369763 45369888 -197294465 - MER5A DNA MER1_type -63 126 3 2462 89 3 3 chr1 45369987 45370300 -197294053 + AluSp SINE Alu 1 313 0 1822 168 0 11 chr1 45370705 45370991 -197293362 - AluJb SINE Alu -29 283 1 470 252 53 58 chr1 45371010 45371216 -197293137 + L2 LINE L2 3109 3313 0 308 315 150 8 chr1 45371225 45371479 -197292874 + L3 LINE CR1 629 918 -659 722 322 57 37 chr1 45371515 45371813 -197292540 + L3 LINE CR1 1057 1360 -217 382 271 29 77 chr1 45372452 45372540 -197291813 - L2 LINE L2 0 3313 3222 2080 136 20 0 chr1 45372540 45372841 -197291512 + AluSx SINE Alu 1 307 -5 382 271 29 77 chr1 45372841 45372911 -197291442 - L2 LINE L2 -91 3222 3165 2058 120 0 42 chr1 45372911 45373219 -197291134 - AluSx SINE Alu -17 295 1 382 271 29 77 chr1 45373219 45373266 -197291087 - L2 LINE L2 -148 3165 3117 364 235 37 12 chr1 45373696 45373777 -197290576 - L2 LINE L2 0 3272 3190 2354 103 0 0 chr1 45374190 45374490 -197289863 + AluSg SINE Alu 1 300 -10 2465 58 31 0 chr1 45374857 45375151 -197289202 - AluY SINE Alu -8 303 1 196 326 63 11 chr1 45375152 45375247 -197289106 + L2 LINE L2 2686 2785 -529 1878 177 3 7 chr1 45375320 45375630 -197288723 - AluJb SINE Alu -3 309 1 209 250 155 0 chr1 45375848 45375932 -197288421 + MIR SINE MIR 46 142 -120 2437 84 0 0 chr1 45375980 45376279 -197288074 + AluSq SINE Alu 1 299 -14 1775 181 3 10 chr1 45376322 45376615 -197287738 - AluJb SINE Alu -21 291 1 744 305 20 12 chr1 45376615 45376850 -197287503 - MIR SINE MIR -11 251 12 2523 69 3 19 chr1 45376859 45377176 -197287177 - AluSx SINE Alu 0 312 1 182 264 19 19 chr1 45377685 45377738 -197286615 - L2 LINE L2 -1891 1423 1371 264 323 71 10 chr1 45378210 45378309 -197286044 - L2 LINE L2 -28 3244 3140 21 0 0 0 chr1 45378829 45378850 -197285503 + AT_rich Low_complexity Low_complexity 1 21 0 1805 164 11 0 chr1 45379318 45379593 -197284760 + AluJb SINE Alu 1 278 -34 2138 103 45 0 chr1 45380389 45380558 -197283795 - AluSq SINE Alu -8 305 116 198 0 0 0 chr1 45380558 45380580 -197283773 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2138 103 45 0 chr1 45380580 45380700 -197283653 - AluSq SINE Alu -197 116 3 467 319 40 102 chr1 45381227 45381478 -197282875 - L2 LINE L2 -14 3258 2993 2112 129 0 32 chr1 45381478 45381788 -197282565 - AluSx SINE Alu -12 300 1 467 319 40 102 chr1 45381788 45382075 -197282278 - L2 LINE L2 -279 2993 2781 854 226 88 8 chr1 45382075 45382314 -197282039 + MIR SINE MIR 3 260 -2 467 319 40 102 chr1 45382314 45382529 -197281824 - L2 LINE L2 -491 2781 2554 1860 159 7 45 chr1 45382612 45382921 -197281432 + AluSx SINE Alu 1 297 -15 730 207 0 0 chr1 45382942 45383063 -197281290 + FLAM_A SINE Alu 6 126 -16 372 174 116 12 chr1 45383078 45383164 -197281189 - L1ME4a LINE L1 -21 6100 6006 2505 76 0 0 chr1 45383218 45383522 -197280831 - AluY SINE Alu -7 304 1 1891 176 3 10 chr1 45383655 45383956 -197280397 - AluJo SINE Alu -13 299 1 444 234 60 55 chr1 45383956 45384157 -197280196 - L1ME4a LINE L1 -229 5892 5691 5462 126 30 15 chr1 45384798 45385661 -197278692 + L1MA3 LINE L1 4126 5007 -1139 2395 87 0 13 chr1 45385661 45385970 -197278383 + AluSg SINE Alu 1 305 -5 5462 126 30 15 chr1 45385970 45386059 -197278294 + L1MA3 LINE L1 5007 5093 -1053 2458 91 0 3 chr1 45387161 45387468 -197276885 - AluSg SINE Alu -3 307 2 1638 172 38 0 chr1 45387710 45387977 -197276376 - AluJo SINE Alu -35 277 1 6587 89 11 33 chr1 45387977 45388495 -197275858 + L1MA3 LINE L1 5082 5610 -695 273 148 1 0 chr1 45388495 45388511 -197275842 + AluYa5 SINE Alu 1 15 -273 1845 108 67 0 chr1 45388511 45388779 -197275574 + AluSg SINE Alu 1 286 -24 273 148 1 0 chr1 45388779 45388799 -197275554 + AluYa5 SINE Alu 15 288 0 6587 89 11 33 chr1 45388799 45389388 -197274965 + L1MA3 LINE L1 5610 6193 -112 1112 92 0 0 chr1 45389392 45389534 -197274819 + AluSq/x SINE Alu 6 147 -165 5119 87 219 113 chr1 45389693 45390839 -197273514 + pTR5 LTR ERV1 1172 2438 0 1720 128 164 10 chr1 45390843 45391148 -197273205 + MSTA LTR MaLR 77 428 0 447 176 0 0 chr1 45391148 45391233 -197273120 + L1M4 LINE L1 4957 5041 -1105 930 183 12 0 chr1 45391234 45391403 -197272950 + AluJb SINE Alu 135 305 -7 477 0 0 0 chr1 45391410 45391463 -197272890 + (CA)n Simple_repeat Simple_repeat 2 54 0 1694 168 25 6 chr1 45391478 45391899 -197272454 + L1M4 LINE L1 5029 5456 -728 2266 111 13 0 chr1 45391902 45392208 -197272145 + LTR22A LTR ERVK 149 458 0 2220 102 0 0 chr1 45392236 45392529 -197271824 + AluSc SINE Alu 1 293 -16 393 305 126 22 chr1 45393105 45393209 -197271144 + MIR SINE MIR 17 109 -153 1935 134 70 22 chr1 45393209 45393567 -197270786 + THE1C LTR MaLR 1 375 0 393 305 126 22 chr1 45393567 45393685 -197270668 + MIR SINE MIR 109 262 0 2387 73 0 6 chr1 45393786 45394099 -197270254 - AluY SINE Alu 0 311 1 6115 208 49 68 chr1 45394369 45396127 -197268226 + MER52A LTR ERV1 29 1276 -2 281 267 20 0 chr1 45396262 45396363 -197267990 + L1 LINE L1 3876 3978 -2168 349 241 79 118 chr1 45396404 45396607 -197267746 + L1 LINE L1 4092 4286 -1860 850 193 0 0 chr1 45396664 45396840 -197267513 + AluJb SINE Alu 136 311 0 946 114 0 0 chr1 45397461 45397601 -197266752 + AluSg/x SINE Alu 162 301 -11 231 350 50 33 chr1 45398054 45398174 -197266179 + MIR SINE MIR 13 134 -128 5632 159 35 0 chr1 45398177 45400020 -197264333 - L1PB4 LINE L1 -2 6154 4250 336 24 0 0 chr1 45400025 45400066 -197264287 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr1 45400065 45400086 -197264267 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 7015 61 3 0 chr1 45400066 45401538 -197262815 - L1PA7 LINE L1 -19 6135 4680 9285 90 6 18 chr1 45401539 45402852 -197261501 - L1PA7 LINE L1 -2996 3150 1852 2355 93 3 0 chr1 45402852 45403163 -197261190 + AluSp SINE Alu 1 312 -1 9285 90 6 18 chr1 45403163 45403207 -197261146 - L1PA7 LINE L1 -4294 1852 1809 944 215 129 50 chr1 45403874 45404229 -197260124 - HsTC2 DNA Tc2 0 1898 1515 810 271 19 90 chr1 45404229 45404568 -197259785 + MER65A LTR ERV1 1 298 -147 2108 102 3 0 chr1 45404568 45404861 -197259492 + AluSx SINE Alu 5 298 -14 810 271 19 90 chr1 45404861 45405000 -197259353 + MER65A LTR ERV1 298 445 0 269 88 53 35 chr1 45405282 45405339 -197259014 + MER57-int LTR ERV1 547 604 -4267 412 274 12 95 chr1 45405549 45405717 -197258636 + MER57-int LTR ERV1 701 854 -4017 730 184 16 76 chr1 45405717 45405902 -197258451 + MER57-int LTR ERV1 617 790 -6747 1265 63 74 0 chr1 45405987 45406162 -197258191 - LTR7 LTR ERV1 -2 448 261 2034 82 44 7 chr1 45406287 45406673 -197257680 - LTR7 LTR ERV1 -2 448 1 2466 87 48 13 chr1 45406673 45407052 -197257301 - HERVH LTR ERV1 0 7713 7322 1414 115 23 9 chr1 45407050 45407267 -197257086 - HERVH LTR ERV1 -1894 5819 5600 * 4256 122 49 0 chr1 45407268 45407899 -197256454 - HERVH LTR ERV1 -2564 5149 4488 3757 83 0 6 chr1 45407901 45408406 -197255947 - HERVH LTR ERV1 -3720 3993 3492 876 155 20 0 chr1 45408396 45408544 -197255809 - HERVH LTR ERV1 -4423 3290 3140 * 21099 95 15 14 chr1 45408538 45411523 -197252830 - HERVH LTR ERV1 -4726 2987 1 2459 85 160 5 chr1 45411525 45411913 -197252440 - LTR7 LTR ERV1 -2 448 1 248 286 0 0 chr1 45412100 45412156 -197252197 + MER67B LTR ERV1 147 202 -459 265 208 0 0 chr1 45412160 45412213 -197252140 + LOR1-int LTR ERV1 1591 1643 -4688 543 237 0 50 chr1 45412247 45412386 -197251967 + LOR1-int LTR ERV1 298 429 -4507 979 204 49 31 chr1 45412444 45412842 -197251511 + LOR1-int LTR ERV1 1198 1474 -3523 668 226 51 62 chr1 45412851 45412890 -197251463 + LOR1-int LTR ERV1 1679 1717 -3219 2229 73 0 26 chr1 45412890 45413193 -197251160 + AluY SINE Alu 1 295 -16 668 226 51 62 chr1 45413193 45413445 -197250908 + LOR1-int LTR ERV1 1717 1967 -2969 541 294 65 103 chr1 45413679 45413941 -197250412 + HERV16 LTR ERVL 2579 2830 -2166 474 283 111 29 chr1 45413941 45414319 -197250034 + L1ME LINE L1 3926 4334 -1812 * 542 160 10 10 chr1 45414305 45414405 -197249948 + L1MC4 LINE L1 7453 7552 -490 1973 175 81 39 chr1 45414415 45414873 -197249480 + MLT1D LTR MaLR 29 505 0 1803 117 58 3 chr1 45414937 45415228 -197249125 + AluSg SINE Alu 2 308 -2 2174 101 3 0 chr1 45415234 45415531 -197248822 + AluSg SINE Alu 1 298 -12 2191 110 0 0 chr1 45415536 45415837 -197248516 + AluY SINE Alu 1 301 -10 1033 188 19 39 chr1 45415847 45416093 -197248260 + L1MC4 LINE L1 7657 7899 -143 432 51 0 0 chr1 45416093 45416152 -197248201 + (CA)n Simple_repeat Simple_repeat 2 60 0 277 227 53 0 chr1 45416799 45416874 -197247479 + L1ME LINE L1 5347 5425 -745 2386 106 43 61 chr1 45416875 45417237 -197247116 + MSTA LTR MaLR 1 289 -75 2082 107 3 3 chr1 45417237 45417526 -197246827 - AluSq SINE Alu -24 289 1 2386 106 43 61 chr1 45417526 45417582 -197246771 + MSTA LTR MaLR 289 344 -20 2094 93 3 62 chr1 45417606 45417928 -197246425 - AluSx SINE Alu -9 303 1 281 59 0 0 chr1 45417932 45417966 -197246387 + MSTA LTR MaLR 395 428 0 351 272 75 69 chr1 45417975 45418149 -197246204 + L1ME LINE L1 5434 5608 -513 462 46 31 0 chr1 45418152 45418217 -197246136 + AluY SINE Alu 240 306 -4 531 0 0 0 chr1 45418217 45418276 -197246077 + (TA)n Simple_repeat Simple_repeat 2 60 0 381 226 157 43 chr1 45418574 45418689 -197245664 - MIR SINE MIR -25 237 110 2180 210 114 10 chr1 45418720 45419230 -197245123 - MLT1F1 LTR MaLR 0 567 5 1686 127 136 22 chr1 45419230 45419553 -197244800 - MER46B DNA MER2_type 0 236 1 277 287 25 51 chr1 45419794 45419951 -197244402 - LTR16C LTR ERVL 0 491 339 504 226 0 0 chr1 45420357 45420450 -197243903 + Tigger4(Zombi) DNA MER2_type 32 124 -2607 2438 107 46 20 chr1 45421191 45421266 -197243087 + L1PB4 LINE L1 5754 5826 -330 2426 66 0 0 chr1 45421266 45421571 -197242782 + AluY SINE Alu 1 305 -6 2438 107 46 20 chr1 45421571 45421888 -197242465 + L1PB4 LINE L1 5826 6156 0 2214 86 33 0 chr1 45421896 45422198 -197242155 + AluSx SINE Alu 1 312 0 326 360 25 0 chr1 45422365 45422526 -197241827 + ERVL LTR ERVL 1138 1302 -4462 * 1329 287 41 55 chr1 45422519 45423031 -197241322 + ERVL LTR ERVL 2592 3096 -2668 197 302 83 10 chr1 45423102 45423198 -197241155 + MIR SINE MIR 114 216 -46 245 347 33 0 chr1 45423312 45423433 -197240920 - L1ME3A LINE L1 -8 6162 6038 672 282 28 19 chr1 45423812 45424028 -197240325 + MIR SINE MIR 6 223 -39 2028 131 0 0 chr1 45424065 45424355 -197239998 + AluSx SINE Alu 1 290 -22 1930 140 13 10 chr1 45424471 45424779 -197239574 - AluSx SINE Alu -2 310 2 259 274 122 51 chr1 45424812 45424991 -197239362 - MIR3 SINE MIR -37 171 2 515 303 90 7 chr1 45425076 45425353 -197239000 + L1ME4a LINE L1 5816 6115 -6 180 0 0 0 chr1 45425362 45425382 -197238971 + (TG)n Simple_repeat Simple_repeat 2 21 0 297 210 67 17 chr1 45425420 45425528 -197238825 + MIR SINE MIR 32 148 -63 655 217 46 122 chr1 45426386 45426490 -197237863 - MIR SINE MIR -15 247 137 821 178 0 15 chr1 45426490 45426625 -197237728 - FLAM_C SINE Alu 0 133 1 655 217 46 122 chr1 45426625 45426783 -197237570 - MIR SINE MIR -125 137 5 410 274 79 32 chr1 45427066 45427256 -197237097 + MIR3 SINE MIR 4 202 -6 214 284 30 15 chr1 45427315 45427382 -197236971 - MIR3 SINE MIR -3 205 138 312 316 30 23 chr1 45428533 45428666 -197235687 + MIR SINE MIR 32 165 -97 194 321 12 24 chr1 45428702 45428786 -197235567 + MIR SINE MIR 53 135 -127 33 25 0 0 chr1 45429055 45429095 -197235258 + GC_rich Low_complexity Low_complexity 1 40 0 374 304 47 7 chr1 45430087 45430235 -197234118 + MIR3 SINE MIR 23 176 -32 207 303 81 0 chr1 45430304 45430403 -197233950 + L2 LINE L2 2934 3040 -232 279 133 0 0 chr1 45430948 45430993 -197233360 + (CA)n Simple_repeat Simple_repeat 2 46 0 456 340 34 20 chr1 45431008 45431210 -197233143 - MIR SINE MIR -32 230 22 198 143 0 29 chr1 45431280 45431315 -197233038 - MIR3 SINE MIR -18 190 157 1325 79 5 8 chr1 45431316 45431532 -197232821 + AluSq SINE Alu 1 298 -15 293 343 17 6 chr1 45431710 45431888 -197232465 + (CA)n Simple_repeat Simple_repeat 1 180 0 212 256 0 0 chr1 45432756 45432795 -197231558 - L2 LINE L2 -7 3265 3227 280 264 14 0 chr1 45432840 45432912 -197231441 - Charlie8 DNA MER1_type 0 2417 2345 1432 156 25 44 chr1 45432991 45433256 -197231097 + AluJo SINE Alu 20 281 -31 180 0 0 0 chr1 45433256 45433276 -197231077 + (CCA)n Simple_repeat Simple_repeat 1 20 0 279 0 0 0 chr1 45433781 45433812 -197230541 + (CA)n Simple_repeat Simple_repeat 1 31 0 442 236 31 108 chr1 45434020 45434186 -197230167 + MIR3 SINE MIR 15 170 -38 201 281 62 0 chr1 45434828 45434924 -197229429 + (CACG)n Simple_repeat Simple_repeat 4 105 0 503 248 117 0 chr1 45435072 45435209 -197229144 + MIR SINE MIR 6 158 -104 482 197 228 0 chr1 45435225 45435352 -197229001 - MER4C LTR ERV1 -10 455 300 535 139 267 64 chr1 45435447 45435634 -197228719 - MER4A LTR ERV1 -322 342 118 1347 87 0 0 chr1 45435635 45435808 -197228545 - AluSq SINE Alu -140 173 1 683 129 0 26 chr1 45435808 45435924 -197228429 - MER4A LTR ERV1 -551 113 1 268 189 162 27 chr1 45435929 45436003 -197228350 + MIR SINE MIR 167 250 -12 275 330 7 113 chr1 45436013 45436188 -197228165 + L2 LINE L2 2841 3033 -239 2214 78 3 0 chr1 45436188 45436482 -197227871 - AluY SINE Alu -12 299 5 2078 74 0 89 chr1 45436488 45436813 -197227540 - AluSp SINE Alu -17 296 1 275 330 7 113 chr1 45436813 45436921 -197227432 + L2 LINE L2 3038 3100 -172 360 64 0 0 chr1 45437599 45437646 -197226707 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 238 167 0 83 chr1 45437652 45437712 -197226641 + GA-rich Low_complexity Low_complexity 4 58 0 356 294 56 31 chr1 45438018 45438178 -197226175 - MIR SINE MIR -31 231 68 * 514 310 135 0 chr1 45438177 45438406 -197225947 - MIR SINE MIR 0 262 3 180 0 0 0 chr1 45438830 45438850 -197225503 + (CCCCAG)n Simple_repeat Simple_repeat 6 25 0 282 329 7 21 chr1 45439215 45439355 -197224998 + (CCA)n Simple_repeat Simple_repeat 3 140 0 216 292 11 60 chr1 45439431 45439616 -197224737 + (CACCAT)n Simple_repeat Simple_repeat 4 179 0 504 295 6 22 chr1 45439645 45439828 -197224525 + (CCA)n Simple_repeat Simple_repeat 1 180 0 197 350 25 0 chr1 45440497 45440577 -197223776 + MIR SINE MIR 33 114 -94 224 294 110 6 chr1 45441302 45441465 -197222888 + L2 LINE L2 2838 3017 -296 263 315 9 63 chr1 45441490 45441601 -197222752 + L2 LINE L2 3119 3223 -49 2433 97 0 0 chr1 45441685 45441994 -197222359 + AluSx SINE Alu 1 309 -3 362 335 29 0 chr1 45442044 45442214 -197222139 - MIR3 SINE MIR -9 199 25 2226 100 7 0 chr1 45442653 45442966 -197221387 + AluSp SINE Alu 1 315 0 2162 120 7 0 chr1 45443206 45443497 -197220856 + AluSg SINE Alu 1 293 -17 1922 140 4 4 chr1 45443563 45443835 -197220518 - AluSq SINE Alu -18 295 24 534 245 174 7 chr1 45444583 45444738 -197219615 + MER5A DNA MER1_type 9 189 0 190 348 148 13 chr1 45445588 45445824 -197218529 - L3 LINE CR1 -106 1471 1204 249 324 0 0 chr1 45445931 45445999 -197218354 - L3 LINE CR1 -427 1150 1083 2547 84 0 0 chr1 45446052 45446360 -197217993 - AluSx SINE Alu -4 308 1 528 233 50 93 chr1 45446371 45446629 -197217724 - MER112 DNA MER1_type -13 247 1 618 271 6 12 chr1 45446634 45446800 -197217553 - MIR SINE MIR -90 172 8 307 341 39 8 chr1 45447042 45447171 -197217182 - L3 LINE CR1 -1000 577 445 189 371 40 16 chr1 45447582 45447706 -197216647 - L3 LINE CR1 -1147 430 304 408 227 52 36 chr1 45448758 45448908 -197215445 + MIR SINE MIR 102 256 -6 209 296 61 51 chr1 45449122 45449220 -197215133 - MIR SINE MIR -73 135 37 1448 78 54 0 chr1 45449225 45449430 -197214923 + MER30 DNA MER1_type 1 216 -14 451 208 0 30 chr1 45449773 45449874 -197214479 + MIR SINE MIR 46 143 -65 829 235 35 26 chr1 45449997 45450227 -197214126 - MIR SINE MIR 0 262 31 508 268 52 7 chr1 45450388 45450541 -197213812 - MIR SINE MIR -53 209 50 272 267 78 22 chr1 45451128 45451218 -197213135 - HERV16 LTR ERVL -300 4696 4602 719 346 50 20 chr1 45451277 45451635 -197212718 - HERV16 LTR ERVL -708 5056 4688 369 269 60 75 chr1 45451638 45451772 -197212581 - HERV16 LTR ERVL -1628 3368 3237 2213 315 18 15 chr1 45451904 45452857 -197211496 - HERV16 LTR ERVL -1900 3096 2388 734 183 15 0 chr1 45452878 45453015 -197211338 - FLAM_C SINE Alu -3 140 2 498 143 0 159 chr1 45453104 45453207 -197211146 - Tigger7 DNA MER2_type 0 2491 2410 2144 127 10 3 chr1 45453207 45453514 -197210839 - AluSx SINE Alu -3 309 1 498 143 0 159 chr1 45453514 45453536 -197210817 - Tigger7 DNA MER2_type -81 2410 2386 1332 198 0 13 chr1 45453537 45453774 -197210579 - Tigger7 DNA MER2_type -471 234 1 907 236 5 14 chr1 45453879 45454087 -197210266 - HERV16 LTR ERVL -2760 2236 2031 602 288 60 14 chr1 45454167 45454382 -197209971 - HERV16 LTR ERVL -4715 281 57 581 314 30 34 chr1 45454410 45454692 -197209661 - LTR16B LTR ERVL -5 445 108 2130 167 62 20 chr1 45454744 45455192 -197209161 + MLT1C LTR MaLR 1 467 0 1042 160 0 48 chr1 45455832 45456019 -197208334 - FRAM SINE Alu -3 173 1 846 227 54 57 chr1 45456728 45456847 -197207506 + LTR37A LTR ERV1 81 199 -227 2166 122 7 3 chr1 45456847 45457151 -197207202 - AluSp SINE Alu -7 306 2 846 227 54 57 chr1 45457151 45457193 -197207160 + LTR37A LTR ERV1 199 240 -186 1741 192 7 10 chr1 45457193 45457485 -197206868 - AluJb SINE Alu -21 291 1 846 227 54 57 chr1 45457485 45457653 -197206700 + LTR37A LTR ERV1 240 410 -16 212 267 0 0 chr1 45457760 45457820 -197206533 + T-rich Low_complexity Low_complexity 4 63 0 243 0 0 0 chr1 45458414 45458441 -197205912 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 435 308 49 16 chr1 45459048 45459083 -197205270 - MIR SINE MIR -7 255 223 2443 88 3 0 chr1 45459083 45459380 -197204973 - AluSp SINE Alu -15 298 1 435 308 49 16 chr1 45459380 45459529 -197204824 - MIR SINE MIR -39 223 65 352 289 124 0 chr1 45459947 45460068 -197204285 + MIR SINE MIR 32 167 -95 921 172 0 0 chr1 45460259 45460439 -197203914 + (TG)n Simple_repeat Simple_repeat 1 180 0 972 217 20 5 chr1 45460440 45460643 -197203710 - MLT2C2 LTR ERVL -67 397 192 208 194 45 15 chr1 45460643 45460710 -197203643 - L2 LINE L2 -418 2896 2828 2098 158 0 0 chr1 45461873 45462177 -197202176 + AluSx SINE Alu 1 304 -8 293 286 29 25 chr1 45462409 45462545 -197201808 - MIR SINE MIR -51 157 19 524 297 89 21 chr1 45462627 45462863 -197201490 + MIR SINE MIR 2 253 -9 202 284 30 0 chr1 45463000 45463067 -197201286 + GA-rich Low_complexity Low_complexity 4 72 0 361 336 19 0 chr1 45463334 45463438 -197200915 + MIR SINE MIR 47 152 -110 1858 175 3 3 chr1 45463790 45464082 -197200271 - AluJo SINE Alu -20 292 1 1164 162 5 11 chr1 45464132 45464317 -197200036 - AluJo SINE Alu -16 296 113 2346 112 0 0 chr1 45464596 45464901 -197199452 - AluSx SINE Alu -2 310 6 200 258 194 0 chr1 45465001 45465125 -197199228 + L2 LINE L2 3166 3313 0 277 291 0 0 chr1 45465129 45465208 -197199145 - MIR SINE MIR -1 261 183 2360 119 0 0 chr1 45465230 45465542 -197198811 + AluSx SINE Alu 1 312 0 664 295 27 16 chr1 45465546 45465956 -197198397 - MLT1K LTR MaLR -18 570 111 367 239 85 39 chr1 45466024 45466154 -197198199 - MIR SINE MIR -107 155 20 225 100 0 0 chr1 45466239 45466269 -197198084 + Charlie1 DNA MER1_type 1 30 -2731 306 267 0 11 chr1 45466270 45466360 -197197993 + MER5C DNA MER1_type 33 121 -203 275 333 65 30 chr1 45467191 45467359 -197196994 + MIR SINE MIR 39 212 -50 415 315 116 6 chr1 45467438 45467619 -197196734 + MIR SINE MIR 56 256 -6 * 603 297 84 62 chr1 45467614 45468320 -197196033 - L2 LINE L2 -2 3270 2545 248 359 11 0 chr1 45468397 45468489 -197195864 - L2 LINE L2 -919 2395 2303 478 135 202 0 chr1 45468553 45468642 -197195711 - U6 snRNA snRNA 0 107 1 201 327 103 73 chr1 45468644 45468706 -197195647 - L2 LINE L2 -1412 1902 1843 677 218 13 0 chr1 45468706 45468862 -197195491 + L1MA10 LINE L1 6177 6334 0 201 327 103 73 chr1 45468862 45469003 -197195350 - L2 LINE L2 -1471 1843 1708 2313 112 0 0 chr1 45469003 45469299 -197195054 + AluSx SINE Alu 1 296 -16 201 327 103 73 chr1 45469299 45470187 -197194166 - L2 LINE L2 -1606 1708 777 1637 170 65 0 chr1 45470325 45470602 -197193751 - AluJo SINE Alu -17 295 1 185 317 0 17 chr1 45470611 45470671 -197193682 + L2 LINE L2 3004 3062 -210 375 366 60 6 chr1 45470810 45470993 -197193360 - MIR SINE MIR 0 262 70 583 233 82 0 chr1 45471223 45471369 -197192984 + MLT1A2 LTR MaLR 1 158 -216 2282 93 7 0 chr1 45471379 45471668 -197192685 + AluSp SINE Alu 1 291 -22 2560 72 3 0 chr1 45471686 45471990 -197192363 + AluSq SINE Alu 1 305 -8 374 321 7 14 chr1 45472434 45472574 -197191779 + L1ME4a LINE L1 5573 5711 -410 765 202 47 82 chr1 45472579 45472719 -197191634 + MIR SINE MIR 1 129 -133 2534 67 0 0 chr1 45472719 45473017 -197191336 + AluY SINE Alu 2 299 -12 765 202 47 82 chr1 45473017 45473133 -197191220 + MIR SINE MIR 129 248 -14 2050 153 3 10 chr1 45473145 45473459 -197190894 + AluSx SINE Alu 1 312 0 2487 88 0 0 chr1 45473467 45473772 -197190581 + AluSg SINE Alu 1 305 -5 494 252 134 55 chr1 45473779 45474144 -197190209 + L1ME4a LINE L1 5724 6117 -4 255 200 88 100 chr1 45474218 45474298 -197190055 - L2 LINE L2 0 3313 3235 237 231 19 0 chr1 45474327 45474379 -197189974 + GA-rich Low_complexity Low_complexity 1 53 0 478 301 53 14 chr1 45474595 45474804 -197189549 - MIR SINE MIR -41 221 5 289 281 62 31 chr1 45474929 45475057 -197189296 - MIR3 SINE MIR -74 134 3 2160 133 0 3 chr1 45475144 45475452 -197188901 - AluSq SINE Alu -6 307 1 213 260 27 14 chr1 45475661 45475734 -197188619 + L3 LINE CR1 1149 1222 -355 335 360 0 0 chr1 45475747 45475861 -197188492 - L2 LINE L2 -1 3312 3199 506 274 99 18 chr1 45475878 45476101 -197188252 + L3 LINE CR1 1240 1480 -97 2170 120 6 22 chr1 45476113 45476430 -197187923 + AluSx SINE Alu 1 312 0 1253 184 42 125 chr1 45476449 45476681 -197187672 - MLT1A2 LTR MaLR 0 374 124 2134 128 3 13 chr1 45476681 45476850 -197187503 - AluSx SINE Alu -9 303 137 2435 58 3 3 chr1 45476850 45477171 -197187182 - AluY SINE Alu 0 311 1 2134 128 3 13 chr1 45477171 45477307 -197187046 - AluSx SINE Alu -175 137 1 1253 184 42 125 chr1 45477307 45477325 -197187028 - MLT1A2 LTR MaLR -250 124 106 2278 93 7 0 chr1 45477325 45477614 -197186739 - AluSp SINE Alu -22 291 1 1253 184 42 125 chr1 45477614 45477770 -197186583 - MLT1A2 LTR MaLR -268 106 1 375 366 60 6 chr1 45478000 45478183 -197186170 + MIR SINE MIR 70 262 0 185 317 0 17 chr1 45478323 45478383 -197185970 - L2 LINE L2 -210 3062 3004 1605 173 65 0 chr1 45478392 45478669 -197185684 + AluJo SINE Alu 1 295 -17 205 323 105 75 chr1 45478807 45479695 -197184658 + L2 LINE L2 777 1637 -1677 2322 111 0 0 chr1 45479695 45479992 -197184361 - AluSx SINE Alu -15 297 1 205 323 105 75 chr1 45479992 45480133 -197184220 + L2 LINE L2 1637 1843 -1471 677 218 13 0 chr1 45480133 45480289 -197184064 - L1MA10 LINE L1 0 6334 6177 205 323 105 75 chr1 45480289 45480351 -197184002 + L2 LINE L2 1843 1902 -1412 478 135 202 0 chr1 45480353 45480442 -197183911 + U6 snRNA snRNA 1 107 0 248 359 11 0 chr1 45480506 45480598 -197183755 + L2 LINE L2 2303 2395 -919 603 297 84 62 chr1 45480675 45481381 -197182972 + L2 LINE L2 2545 3270 -2 405 320 116 6 chr1 45481376 45481557 -197182796 - MIR SINE MIR -6 256 56 * 287 327 65 30 chr1 45481636 45481804 -197182549 - MIR SINE MIR -50 212 39 306 267 0 11 chr1 45482635 45482725 -197181628 - MER5C DNA MER1_type -203 121 33 225 100 0 0 chr1 45482726 45482756 -197181597 - Charlie1 DNA MER1_type -2731 30 1 367 239 85 39 chr1 45482841 45482971 -197181382 + MIR SINE MIR 20 155 -107 664 295 27 16 chr1 45483039 45483449 -197180904 + MLT1K LTR MaLR 111 570 -18 2360 119 0 0 chr1 45483453 45483765 -197180588 - AluSx SINE Alu 0 312 1 277 291 0 0 chr1 45483787 45483866 -197180487 + MIR SINE MIR 183 261 -1 200 258 194 0 chr1 45483870 45483994 -197180359 - L2 LINE L2 0 3313 3166 2361 108 0 0 chr1 45484094 45484399 -197179954 + AluSx SINE Alu 6 310 -2 902 302 101 36 chr1 45484955 45485369 -197178984 + LTR16C LTR ERVL 51 491 0 188 310 17 0 chr1 45485684 45485742 -197178611 + L2 LINE L2 763 821 -2493 247 320 78 10 chr1 45486063 45486166 -197178187 + MIR SINE MIR 45 154 -108 298 232 0 0 chr1 45486335 45486391 -197177962 + MIR SINE MIR 207 262 0 1211 208 64 111 chr1 45486399 45486474 -197177879 - MLT1C LTR MaLR 0 467 390 2458 93 0 0 chr1 45486474 45486784 -197177569 - AluSg SINE Alu 0 310 1 1211 208 64 111 chr1 45486784 45487073 -197177280 - MLT1C LTR MaLR -77 390 128 2256 99 3 0 chr1 45487073 45487387 -197176966 - AluSp SINE Alu 0 315 1 1211 208 64 111 chr1 45487387 45487505 -197176848 - MLT1C LTR MaLR -339 128 6 212 288 54 27 chr1 45487515 45487626 -197176727 - L2 LINE L2 -1422 1892 1779 2271 107 0 0 chr1 45487634 45487924 -197176429 - AluSg SINE Alu -20 290 1 1574 143 4 42 chr1 45487936 45488195 -197176158 - AluJb SINE Alu -53 259 11 5039 83 20 25 chr1 45488898 45489113 -197175240 - L1PB2 LINE L1 -2 6149 5935 2159 138 0 0 chr1 45489113 45489409 -197174944 - AluSg SINE Alu -14 296 1 5039 83 20 25 chr1 45489409 45489926 -197174427 - L1PB2 LINE L1 -216 5935 5420 701 315 169 22 chr1 45489933 45490761 -197173592 + L2 LINE L2 1964 2913 -401 259 283 183 50 chr1 45490813 45491032 -197173321 + L2 LINE L2 3016 3263 -9 343 349 64 32 chr1 45491053 45491302 -197173051 - L1ME LINE L1 -338 5783 5527 2441 173 127 11 chr1 45491306 45491341 -197173012 - MER39 LTR ERV1 -10 697 667 2382 100 3 0 chr1 45491341 45491641 -197172712 - AluSx SINE Alu -6 306 6 2441 173 127 11 chr1 45491641 45492196 -197172157 - MER39 LTR ERV1 -40 667 1 306 239 216 30 chr1 45492555 45492689 -197171664 - MIR SINE MIR -84 178 20 1700 194 39 65 chr1 45492940 45493101 -197171252 + MLT1C LTR MaLR 20 184 -283 2378 88 3 16 chr1 45493101 45493418 -197170935 + AluSq SINE Alu 1 313 0 1700 194 39 65 chr1 45493418 45493714 -197170639 + MLT1C LTR MaLR 184 465 -2 378 205 109 96 chr1 45493815 45493833 -197170520 - L1ME4a LINE L1 -30 6091 6075 2215 104 20 0 chr1 45493833 45494131 -197170222 + AluSq SINE Alu 1 304 -9 378 205 109 96 chr1 45494131 45494268 -197170085 - L1ME4a LINE L1 -46 6075 5934 828 267 140 8 chr1 45494398 45494870 -197169483 - L1ME4a LINE L1 -174 5947 5414 181 271 51 34 chr1 45495503 45495562 -197168791 + MIR SINE MIR 159 218 -44 202 114 0 29 chr1 45496281 45496316 -197168037 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 2569 58 0 3 chr1 45496874 45497182 -197167171 + AluY SINE Alu 1 307 -4 317 321 18 18 chr1 45498497 45498609 -197165744 + MIR SINE MIR 63 174 -88 390 275 42 42 chr1 45498913 45499049 -197165304 - MIR3 SINE MIR -9 199 61 2200 121 26 42 chr1 45499049 45499360 -197164993 + THE1C LTR MaLR 1 306 -69 2320 108 0 0 chr1 45499360 45499665 -197164688 - AluSg SINE Alu -5 305 1 2200 121 26 42 chr1 45499665 45499733 -197164620 + THE1C LTR MaLR 306 374 -1 390 275 42 42 chr1 45499733 45499763 -197164590 - MIR3 SINE MIR -146 62 33 480 275 37 63 chr1 45500051 45500240 -197164113 + MIR SINE MIR 23 206 -56 1978 143 3 38 chr1 45500448 45500763 -197163590 + AluJo SINE Alu 5 308 -4 1187 268 101 14 chr1 45500775 45501200 -197163153 + MLT1D LTR MaLR 44 505 0 450 280 95 30 chr1 45501476 45501644 -197162709 + MIR3 SINE MIR 10 188 -20 2008 163 54 11 chr1 45502005 45502355 -197161998 + MLT1A1 LTR MaLR 1 365 0 501 211 26 67 chr1 45502867 45503010 -197161343 + L1M4 LINE L1 4266 4400 -1746 2353 96 3 0 chr1 45503010 45503312 -197161041 + AluSp SINE Alu 1 303 -10 501 211 26 67 chr1 45503312 45503362 -197160991 + L1M4 LINE L1 4400 4451 -1695 1077 147 319 11 chr1 45503362 45503635 -197160718 - MLT1F1 LTR MaLR 0 567 211 504 224 0 0 chr1 45503637 45503735 -197160618 + MER20 DNA MER1_type 122 219 0 273 170 0 0 chr1 45503846 45503893 -197160460 + L1M4 LINE L1 5140 5186 -960 2268 95 10 7 chr1 45503898 45504193 -197160160 + AluSx SINE Alu 1 296 -16 197 236 73 0 chr1 45504594 45504649 -197159704 + L2 LINE L2 3255 3313 0 180 0 0 0 chr1 45504731 45504751 -197159602 + (TC)n Simple_repeat Simple_repeat 1 20 0 2039 113 44 20 chr1 45504920 45505213 -197159140 + AluSg SINE Alu 1 300 -10 2277 103 6 13 chr1 45505626 45505938 -197158415 + AluSp SINE Alu 1 310 -3 1801 138 3 89 chr1 45506032 45506359 -197157994 + AluJo SINE Alu 1 299 -13 2291 70 0 4 chr1 45506386 45506656 -197157697 + AluSg SINE Alu 1 269 -41 415 145 0 0 chr1 45506656 45506718 -197157635 + Alu SINE Alu 236 297 -15 525 278 12 43 chr1 45506895 45507057 -197157296 + MIR SINE MIR 89 245 -17 655 185 40 7 chr1 45507106 45507257 -197157096 - L1MA10 LINE L1 -2 6332 6177 989 227 58 0 chr1 45507258 45507500 -197156853 - L1ME1 LINE L1 -332 5834 5579 181 311 0 0 chr1 45507685 45507730 -197156623 - MER5A DNA MER1_type 0 189 145 2141 114 0 26 chr1 45507731 45508038 -197156315 - AluSx SINE Alu -13 299 1 298 0 0 45 chr1 45508089 45508133 -197156220 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2073 138 23 0 chr1 45508140 45508445 -197155908 + AluSx SINE Alu 1 312 0 996 173 6 22 chr1 45508445 45508624 -197155729 + AluJb SINE Alu 132 307 -5 288 295 32 11 chr1 45508627 45508722 -197155631 + MER5A DNA MER1_type 66 162 -27 212 307 71 81 chr1 45508783 45509079 -197155274 + L2 LINE L2 2820 3112 -160 2505 45 7 0 chr1 45509256 45509544 -197154809 + AluSp SINE Alu 1 290 -23 464 309 133 62 chr1 45509556 45509925 -197154428 - L1MEc LINE L1 -5967 429 35 199 269 8 37 chr1 45510344 45510480 -197153873 - MIR SINE MIR 0 262 54 605 281 78 37 chr1 45510645 45510710 -197153643 + MIR SINE MIR 4 65 -197 2485 73 7 0 chr1 45510710 45511012 -197153341 - AluY SINE Alu -7 304 1 605 281 78 37 chr1 45511012 45511188 -197153165 + MIR SINE MIR 65 255 -7 3721 168 60 12 chr1 45511189 45511927 -197152426 + L1MCa LINE L1 19 791 -5635 2063 200 57 90 chr1 45511927 45511990 -197152363 - LTR48B LTR ERV1 0 644 580 2302 114 0 0 chr1 45511990 45512288 -197152065 + AluSq SINE Alu 1 298 -15 2063 200 57 90 chr1 45512288 45512436 -197151917 - LTR48B LTR ERV1 -64 580 429 840 93 0 0 chr1 45512436 45512543 -197151810 - U6 snRNA snRNA 0 107 1 2063 200 57 90 chr1 45512543 45512711 -197151642 - LTR48B LTR ERV1 -215 429 257 1593 82 19 5 chr1 45512711 45512919 -197151434 + AluSc SINE Alu 82 292 -17 2063 200 57 90 chr1 45512919 45513203 -197151150 - LTR48B LTR ERV1 -387 257 1 3312 148 25 116 chr1 45513203 45513738 -197150615 + L1MCa LINE L1 788 1370 -5056 2178 95 0 30 chr1 45513738 45514042 -197150311 - AluSx SINE Alu -16 296 2 3312 148 25 116 chr1 45514042 45514098 -197150255 + L1MCa LINE L1 1370 1430 -4996 237 33 0 0 chr1 45514098 45514128 -197150225 + (TC)n Simple_repeat Simple_repeat 1 30 0 3312 148 25 116 chr1 45514128 45514498 -197149855 + L1MCa LINE L1 1430 1662 -4764 734 197 0 8 chr1 45514499 45514626 -197149727 + FLAM_A SINE Alu 2 127 -6 2078 122 3 10 chr1 45514629 45514924 -197149429 + AluSx SINE Alu 1 293 -19 387 250 57 86 chr1 45514930 45515026 -197149327 + L1M4 LINE L1 3758 3850 -2296 2334 115 0 0 chr1 45515026 45515330 -197149023 + AluSx SINE Alu 1 304 -8 387 250 57 86 chr1 45515330 45515373 -197148980 + L1M4 LINE L1 3850 3893 -2253 2173 48 107 0 chr1 45515376 45515646 -197148707 - AluSp SINE Alu -14 299 1 1346 145 83 0 chr1 45515650 45516063 -197148290 + L1MCa LINE L1 1735 2235 -4191 2119 116 3 0 chr1 45516458 45516769 -197147584 + AluSq SINE Alu 1 312 0 300 308 15 23 chr1 45517186 45517316 -197147037 + MIR SINE MIR 80 208 -54 731 140 0 19 chr1 45517318 45517425 -197146928 - AluSg/x SINE Alu -127 183 79 807 189 0 0 chr1 45517456 45517588 -197146765 + AluJb SINE Alu 1 132 -180 780 279 96 35 chr1 45517600 45518088 -197146265 + L1ME4a LINE L1 5602 6119 -2 2475 88 3 0 chr1 45518646 45518954 -197145399 + AluSp SINE Alu 1 309 -4 1274 101 6 6 chr1 45518954 45519133 -197145220 + AluSq SINE Alu 134 312 -1 195 114 0 0 chr1 45519304 45519339 -197145014 + (GGTTG)n Simple_repeat Simple_repeat 3 37 0 1782 164 37 13 chr1 45519438 45519737 -197144616 + AluJo SINE Alu 3 308 -4 529 264 122 5 chr1 45520966 45521163 -197143190 + MIR SINE MIR 31 250 -12 614 280 73 14 chr1 45521435 45521653 -197142700 + MIR SINE MIR 32 262 0 844 220 26 52 chr1 45522492 45522515 -197141838 + MIR SINE MIR 13 35 -227 2092 133 3 32 chr1 45522515 45522831 -197141522 + AluJb SINE Alu 1 307 -5 844 220 26 52 chr1 45522831 45523039 -197141314 + MIR SINE MIR 35 238 -24 726 119 20 0 chr1 45523842 45523943 -197140410 + FLAM_C SINE Alu 3 105 -38 25164 69 7 0 chr1 45524069 45527297 -197137056 - HERVL LTR ERVL -301 5353 2104 926 116 0 0 chr1 45527297 45527435 -197136918 + MLT2A1 LTR ERVL 226 363 -81 4646 195 184 28 chr1 45527676 45528856 -197135497 - L1 LINE L1 -3535 3673 2678 2174 147 0 6 chr1 45528856 45529170 -197135183 - AluSx SINE Alu 0 312 1 4646 195 184 28 chr1 45529170 45529205 -197135148 - L1 LINE L1 -4530 2678 2650 2627 42 7 3 chr1 45529205 45529515 -197134838 - AluY SINE Alu 0 311 1 4646 195 184 28 chr1 45529515 45530365 -197133988 - L1 LINE L1 -4558 2650 520 1440 167 70 4 chr1 45530602 45530872 -197133481 - L1MCa LINE L1 -6130 296 9 * 3717 226 123 9 chr1 45530861 45531520 -197132833 - L1M4c LINE L1 -3943 2029 1447 1343 211 82 4 chr1 45531520 45531681 -197132672 - AluJo SINE Alu -11 301 154 249 108 0 0 chr1 45531681 45531718 -197132635 + (TG)n Simple_repeat Simple_repeat 2 38 0 1343 211 82 4 chr1 45531718 45531835 -197132518 - AluJo SINE Alu -158 154 1 3717 226 123 9 chr1 45531835 45531890 -197132463 - L1M4c LINE L1 -4525 1447 1400 180 0 0 0 chr1 45531890 45531910 -197132443 + (TG)n Simple_repeat Simple_repeat 2 21 0 3717 226 123 9 chr1 45531910 45532514 -197131839 - L1M4c LINE L1 -4572 1400 559 239 222 0 0 chr1 45532503 45532548 -197131805 - L1M4c LINE L1 -5129 762 718 * 478 311 89 65 chr1 45533046 45533429 -197130924 - L1M4c LINE L1 -5497 394 3 765 148 0 9 chr1 45533573 45533678 -197130675 + AluJ SINE Alu 2 107 -205 2213 155 48 20 chr1 45533678 45534116 -197130237 - LTR7 LTR ERV1 0 450 1 3583 224 14 47 chr1 45534126 45535840 -197128513 - HERVH LTR ERV1 -4389 2265 802 927 211 50 10 chr1 45535953 45536392 -197127961 - HERVH LTR ERV1 -7267 446 17 2153 143 50 27 chr1 45536412 45536851 -197127502 - LTR7 LTR ERV1 -1 449 1 1181 162 16 0 chr1 45536857 45537048 -197127305 + AluJ SINE Alu 110 303 -9 230 307 18 70 chr1 45537423 45537537 -197126816 + L2 LINE L2 2642 2749 -565 2601 66 0 0 chr1 45537837 45538141 -197126212 - AluY SINE Alu -7 304 1 257 284 28 18 chr1 45538343 45538452 -197125901 + GA-rich Low_complexity Low_complexity 4 113 0 2276 82 41 0 chr1 45538546 45538838 -197125515 + AluSx SINE Alu 1 304 -8 2502 82 3 0 chr1 45538963 45539266 -197125087 + AluSp SINE Alu 7 310 -3 340 294 250 5 chr1 45539359 45539563 -197124790 + MIR SINE MIR 9 262 0 286 287 177 28 chr1 45539724 45539905 -197124448 + MIR SINE MIR 11 218 -44 187 143 0 0 chr1 45540341 45540369 -197123984 + MIR SINE MIR 222 249 -13 1101 157 0 0 chr1 45540378 45540537 -197123816 + AluJb SINE Alu 137 295 -17 426 315 126 22 chr1 45540695 45540917 -197123436 + MIR SINE MIR 12 256 -6 285 263 29 12 chr1 45543319 45543665 -197120688 + (CA)n Simple_repeat Simple_repeat 1 352 0 358 361 72 10 chr1 45544035 45544243 -197120110 + MIR SINE MIR 42 262 0 799 186 35 55 chr1 45544404 45544603 -197119750 - MER58A DNA MER1_type 0 224 30 550 249 109 70 chr1 45544721 45544978 -197119375 + L2 LINE L2 3047 3313 0 299 200 57 71 chr1 45545549 45545619 -197118734 + L2 LINE L2 3167 3235 -37 * 751 243 150 13 chr1 45545617 45545843 -197118510 - MIR SINE MIR -4 258 2 250 274 0 0 chr1 45547412 45547474 -197116879 - MIR3 SINE MIR -6 202 141 23 0 0 0 chr1 45547645 45547668 -197116685 + AT_rich Low_complexity Low_complexity 1 23 0 243 239 0 0 chr1 45547850 45547917 -197116436 + (TA)n Simple_repeat Simple_repeat 1 67 0 225 221 158 11 chr1 45547988 45548083 -197116270 - L1MC4 LINE L1 -1319 6723 6615 339 259 0 59 chr1 45548115 45548252 -197116101 + L1MC4 LINE L1 6614 6704 -1338 212 98 0 49 chr1 45548253 45548294 -197116059 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1687 224 83 34 chr1 45548641 45549137 -197115216 + MLT2B1 LTR ERVL 1 520 0 1271 233 42 60 chr1 45551313 45551716 -197112637 + MSTD LTR MaLR 1 396 0 782 241 35 0 chr1 45551781 45551951 -197112402 + MIR SINE MIR 29 204 -58 741 213 13 13 chr1 45552021 45552171 -197112182 - FAM SINE Alu -9 40 1 304 244 47 12 chr1 45552500 45552586 -197111767 + L1M4 LINE L1 4360 4448 -1698 359 258 190 40 chr1 45552761 45553014 -197111339 + L1M4 LINE L1 5103 5398 -748 2285 110 7 0 chr1 45553936 45554237 -197110116 - AluSq SINE Alu -10 303 1 552 307 21 16 chr1 45555419 45555608 -197108745 - MIR SINE MIR -72 190 1 184 311 94 28 chr1 45555835 45555941 -197108412 - MIR SINE MIR -33 229 117 333 337 79 0 chr1 45556468 45556646 -197107707 + L2 LINE L2 2511 2702 -612 314 152 182 0 chr1 45556647 45556713 -197107640 - AluS SINE Alu -4 297 220 1924 132 8 0 chr1 45556728 45556993 -197107360 - AluSx SINE Alu -45 267 1 492 268 0 55 chr1 45557367 45557531 -197106822 + L2 LINE L2 3158 3312 -1 229 275 30 78 chr1 45557556 45557723 -197106630 + L1MEd LINE L1 954 1112 -5304 420 252 106 73 chr1 45557843 45558061 -197106292 + L3 LINE CR1 1346 1570 -7 276 177 48 73 chr1 45558447 45558571 -197105782 + MER58 DNA MER1_type 81 201 -140 191 235 162 0 chr1 45558990 45559058 -197105295 + MIR SINE MIR 40 118 -90 1494 74 0 74 chr1 45559119 45559335 -197105018 + AluSg/x SINE Alu 108 307 -5 985 157 52 34 chr1 45559353 45559610 -197104743 + L1MEd LINE L1 2261 2512 -3914 2453 92 0 0 chr1 45559610 45559914 -197104439 - AluSx SINE Alu -8 304 1 2317 72 0 0 chr1 45559918 45560237 -197104116 - AluSc SINE Alu 0 319 1 985 157 52 34 chr1 45560237 45560265 -197104088 + L1MEd LINE L1 2452 2478 -3948 2361 106 0 0 chr1 45560645 45560948 -197103405 + AluSx SINE Alu 1 303 -9 427 248 153 13 chr1 45561607 45561764 -197102589 - MIR SINE MIR -83 179 1 269 303 20 20 chr1 45561930 45562029 -197102324 + MIR SINE MIR 51 149 -59 27 0 0 0 chr1 45562246 45562273 -197102080 + AT_rich Low_complexity Low_complexity 1 27 0 2038 254 12 4 chr1 45562273 45562836 -197101517 + L1M4 LINE L1 2247 2814 -3332 727 164 20 20 chr1 45562844 45562990 -197101363 + LTR48B LTR ERV1 499 644 0 2103 118 3 23 chr1 45563427 45563731 -197100622 + AluSp SINE Alu 1 298 -15 474 248 8 26 chr1 45563812 45563929 -197100424 + L3 LINE CR1 1460 1574 -3 29 0 0 0 chr1 45564377 45564406 -197099947 + AT_rich Low_complexity Low_complexity 1 29 0 410 39 0 0 chr1 45564407 45564458 -197099895 - L1PA3 LINE L1 -4 6151 6101 430 297 78 0 chr1 45564612 45564740 -197099613 + MER91C DNA MER1_type 3 140 0 23 0 0 0 chr1 45564830 45564853 -197099500 + AT_rich Low_complexity Low_complexity 1 23 0 714 231 114 30 chr1 45564952 45565182 -197099171 - MIR SINE MIR 0 262 17 261 371 29 40 chr1 45565322 45565497 -197098856 + L2 LINE L2 3098 3270 -2 663 232 92 47 chr1 45565576 45566102 -197098251 - LTR48 LTR ERV1 0 787 1 342 275 159 52 chr1 45566760 45566899 -197097454 + L2 LINE L2 2569 2692 -622 2298 58 55 3 chr1 45566899 45567191 -197097162 + AluSg SINE Alu 1 307 -3 342 275 159 52 chr1 45567191 45567415 -197096938 + L2 LINE L2 2692 2971 -343 208 298 138 21 chr1 45568302 45568396 -197095957 + L2 LINE L2 3208 3312 -1 340 314 21 80 chr1 45568648 45568712 -197095641 + MER5B DNA MER1_type 1 67 -111 3028 88 21 12 chr1 45568712 45569144 -197095209 + L1PA11 LINE L1 5736 6171 -3 340 314 21 80 chr1 45569144 45569267 -197095086 + MER5B DNA MER1_type 67 177 -1 2373 95 0 3 chr1 45569273 45569579 -197094774 + AluSg SINE Alu 1 305 -5 2958 149 43 36 chr1 45569821 45570196 -197094157 + LTR49 LTR ERV1 7 389 -206 2107 99 43 7 chr1 45570196 45570498 -197093855 - AluSq SINE Alu 0 313 1 2958 149 43 36 chr1 45570498 45570707 -197093646 + LTR49 LTR ERV1 389 595 0 285 51 0 0 chr1 45570885 45570924 -197093429 + (ATG)n Simple_repeat Simple_repeat 2 40 0 684 213 43 48 chr1 45570952 45571140 -197093213 - MIR SINE MIR -43 219 33 319 287 57 33 chr1 45571158 45571280 -197093073 - MIR SINE MIR -119 143 19 1755 180 3 23 chr1 45572153 45572453 -197091900 - AluJb SINE Alu -18 294 1 494 239 36 14 chr1 45572559 45572697 -197091656 + MIR SINE MIR 46 186 -76 345 298 106 62 chr1 45572690 45572851 -197091502 - MIR SINE MIR -7 201 34 * 453 303 158 26 chr1 45573399 45573709 -197090644 + L1MB2 LINE L1 5435 5785 -2023 2290 104 3 0 chr1 45573734 45574032 -197090321 + AluSp SINE Alu 1 299 -14 807 150 0 8 chr1 45574042 45574169 -197090184 + FLAM_C SINE Alu 1 126 -7 1599 168 3 56 chr1 45574188 45574491 -197089862 + AluJo SINE Alu 13 299 -13 341 183 0 0 chr1 45574614 45574674 -197089679 + MLT1H1 LTR MaLR 225 284 -311 379 214 171 36 chr1 45574723 45574863 -197089490 + MLT1H1 LTR MaLR 369 527 -28 2287 127 0 9 chr1 45574876 45575055 -197089298 - AluSx SINE Alu 0 312 136 2121 117 0 7 chr1 45575055 45575355 -197088998 - AluSc SINE Alu -11 298 1 2287 127 0 9 chr1 45575355 45575490 -197088863 - AluSx SINE Alu -176 136 1 204 238 0 0 chr1 45575696 45575738 -197088615 + L2 LINE L2 3272 3313 0 2368 83 3 0 chr1 45575808 45576096 -197088257 - AluSp SINE Alu -24 289 1 32 26 0 0 chr1 45576550 45576589 -197087764 + AT_rich Low_complexity Low_complexity 1 39 0 2149 113 0 0 chr1 45576589 45576894 -197087459 - AluSx SINE Alu 0 305 1 1663 199 0 16 chr1 45576896 45577207 -197087146 - AluJo SINE Alu -2 310 5 2223 91 0 4 chr1 45577241 45577517 -197086836 + AluSq SINE Alu 22 296 -17 206 118 29 0 chr1 45577779 45577813 -197086540 + L2 LINE L2 3191 3225 -88 228 274 147 32 chr1 45578060 45578155 -197086198 - MIR SINE MIR -117 145 40 817 178 127 5 chr1 45578230 45578444 -197085909 + L1MB2 LINE L1 5921 6164 -20 2489 68 0 0 chr1 45578486 45578779 -197085574 - AluSg SINE Alu -17 293 1 491 269 97 57 chr1 45578795 45579022 -197085331 + MIR SINE MIR 26 261 -1 404 268 89 30 chr1 45579057 45579225 -197085128 - MIR3 SINE MIR -21 187 10 386 259 31 51 chr1 45579534 45579713 -197084640 + MIR SINE MIR 33 203 -59 942 143 0 0 chr1 45579750 45579883 -197084470 + FLAM_A SINE Alu 1 133 0 2376 83 0 10 chr1 45580183 45580483 -197083870 + AluSq SINE Alu 1 297 -16 304 205 139 57 chr1 45580484 45580606 -197083747 - MIR SINE MIR -109 153 22 581 291 91 0 chr1 45580761 45580936 -197083417 - MIR SINE MIR 0 262 72 259 276 164 40 chr1 45581003 45581155 -197083198 - L2 LINE L2 0 3272 3102 2233 116 0 28 chr1 45581307 45581625 -197082728 - AluSg SINE Alu -1 309 1 870 171 0 0 chr1 45581627 45581756 -197082597 - FLAM_A SINE Alu -4 129 1 510 248 45 15 chr1 45581767 45581864 -197082489 + MIR SINE MIR 53 157 -105 2368 101 7 0 chr1 45581864 45582171 -197082182 + AluSc SINE Alu 1 309 0 510 248 45 15 chr1 45582171 45582206 -197082147 + MIR SINE MIR 157 189 -73 293 281 31 0 chr1 45582221 45582317 -197082036 - L2 LINE L2 0 3272 3174 189 0 0 0 chr1 45582341 45582362 -197081991 + (A)n Simple_repeat Simple_repeat 1 21 0 500 183 30 30 chr1 45582362 45582493 -197081860 - L1ME3A LINE L1 -2 6168 6038 976 150 22 114 chr1 45582494 45582767 -197081586 - MER96B DNA MER1_type? 0 417 170 488 218 163 14 chr1 45582805 45582952 -197081401 - L1ME3A LINE L1 -166 6004 5836 545 291 101 8 chr1 45583112 45583359 -197080994 - L2 LINE L2 -787 2527 2258 213 39 0 0 chr1 45583810 45583836 -197080517 + (CCA)n Simple_repeat Simple_repeat 2 27 0 329 279 40 44 chr1 45584719 45584882 -197079471 - MIR SINE MIR -48 214 45 315 320 62 71 chr1 45584957 45585294 -197079059 + L2 LINE L2 2932 3265 -7 561 157 0 0 chr1 45586362 45586445 -197077908 + FLAM_A SINE Alu 6 88 -54 2344 87 3 10 chr1 45586611 45586922 -197077431 + AluSg1 SINE Alu 1 309 0 202 309 74 0 chr1 45587089 45587170 -197077183 - L2 LINE L2 -212 3060 2974 459 250 19 0 chr1 45587290 45587394 -197076959 - MIR SINE MIR -25 237 132 249 295 0 13 chr1 45587477 45587555 -197076798 - MIR SINE MIR -55 153 77 21 0 0 0 chr1 45587617 45587638 -197076715 + GC_rich Low_complexity Low_complexity 1 21 0 208 282 14 0 chr1 45588097 45588168 -197076185 + SUBTEL_sa Satellite Satellite 13 84 -90 34 24 0 0 chr1 45588438 45588479 -197075874 + GC_rich Low_complexity Low_complexity 1 41 0 191 222 0 22 chr1 45588984 45589029 -197075324 - L2 LINE L2 -9 3304 3261 190 198 37 99 chr1 45589459 45589493 -197074860 - L2 LINE L2 -482 2832 2760 223 204 45 0 chr1 45589493 45589537 -197074816 + MIR SINE MIR 96 141 -67 394 208 13 0 chr1 45589729 45589806 -197074547 - MIR SINE MIR -139 123 46 2330 63 0 106 chr1 45590044 45590392 -197073961 - AluSp SINE Alu -2 311 1 1953 143 44 3 chr1 45591038 45591331 -197073022 - AluSx SINE Alu -7 305 1 316 228 65 0 chr1 45591983 45592075 -197072278 - MIR3 SINE MIR -22 186 89 2388 79 0 20 chr1 45592116 45592421 -197071932 - AluSp SINE Alu -14 299 1 364 285 93 93 chr1 45595204 45595418 -197068935 - L1MC4a LINE L1 -1823 5985 5772 299 280 112 14 chr1 45595440 45595583 -197068770 + L2 LINE L2 3120 3276 -37 225 241 83 90 chr1 45595602 45595673 -197068680 - MIR3 SINE MIR -37 171 100 2499 58 0 7 chr1 45595673 45595966 -197068387 - AluSq SINE Alu -22 291 1 225 241 83 90 chr1 45595966 45596027 -197068326 - MIR3 SINE MIR -108 100 40 1148 210 49 19 chr1 45596305 45596572 -197067781 - MER58B DNA MER1_type 0 341 67 1910 143 7 33 chr1 45597394 45597563 -197066790 - AluSx SINE Alu -13 299 140 2513 61 3 13 chr1 45597563 45597873 -197066480 - AluY SINE Alu -4 307 1 1910 143 7 33 chr1 45597873 45598010 -197066343 - AluSx SINE Alu -172 140 1 201 262 0 0 chr1 45598623 45598665 -197065688 - MIR SINE MIR -190 72 31 747 233 80 50 chr1 45598931 45599193 -197065160 - AluSx SINE Alu -18 294 25 284 215 46 0 chr1 45599668 45599733 -197064620 - MIR SINE MIR -84 178 111 383 291 64 55 chr1 45599932 45600152 -197064201 + L2 LINE L2 2875 3096 -176 231 292 0 0 chr1 45600634 45600706 -197063647 + MER113 DNA MER1_type? 32 103 -418 1768 117 139 0 chr1 45600889 45601162 -197063191 - AluSx SINE Alu -1 311 1 572 183 0 0 chr1 45601263 45601367 -197062986 - FRAM SINE Alu -6 170 67 205 238 135 40 chr1 45602615 45602741 -197061612 + MIR3 SINE MIR 24 161 -47 304 309 42 37 chr1 45603792 45603983 -197060370 - MIR SINE MIR -56 206 15 200 254 45 30 chr1 45604159 45604226 -197060127 - MIR3 SINE MIR -16 192 125 350 283 41 60 chr1 45604312 45604478 -197059875 - MIR3 SINE MIR -65 143 3 524 188 59 0 chr1 45604976 45605077 -197059276 - MER5B DNA MER1_type -71 107 1 195 294 77 56 chr1 45605205 45605348 -197059005 - L2 LINE L2 -375 2939 2794 831 113 14 56 chr1 45605911 45606053 -197058300 + AluJo SINE Alu 1 136 -176 390 191 21 43 chr1 45606170 45606264 -197058089 + L2 LINE L2 3195 3286 -27 21 0 0 0 chr1 45606521 45606542 -197057811 + AT_rich Low_complexity Low_complexity 1 21 0 2210 130 0 16 chr1 45606683 45606990 -197057363 - AluSx SINE Alu -10 302 1 314 270 9 70 chr1 45607555 45607670 -197056683 - L2 LINE L2 -5 3308 3201 249 231 26 51 chr1 45608209 45608287 -197056066 - MIR SINE MIR -80 182 107 268 299 79 30 chr1 45608625 45608789 -197055564 - MIR3 SINE MIR -7 201 30 793 312 30 4 chr1 45608900 45609137 -197055216 - MIR SINE MIR -10 252 10 790 182 130 5 chr1 45609562 45609754 -197054599 - MER20 DNA MER1_type 0 219 4 180 0 0 0 chr1 45609991 45610011 -197054342 + (GCCTG)n Simple_repeat Simple_repeat 2 21 0 643 222 102 12 chr1 45610629 45610796 -197053557 + MER58C DNA MER1_type 26 207 -8 257 297 94 16 chr1 45610815 45610943 -197053410 - L3 LINE CR1 -112 1465 1328 408 371 29 6 chr1 45613520 45613695 -197050658 - MIR SINE MIR -71 191 13 2056 136 10 16 chr1 45614804 45615113 -197049240 - AluSx SINE Alu -5 307 1 337 292 58 17 chr1 45615232 45615352 -197049001 - MIR3 SINE MIR -23 185 61 337 195 52 0 chr1 45616404 45616481 -197047872 - MIR SINE MIR -71 191 111 295 273 200 6 chr1 45618089 45618254 -197046099 - MIR SINE MIR -59 203 7 211 191 48 0 chr1 45619337 45619379 -197044974 - MIR SINE MIR -87 121 78 271 282 100 36 chr1 45621152 45621262 -197043091 + L2 LINE L2 3181 3297 -16 321 47 0 0 chr1 45621743 45621786 -197042567 + (GGGTG)n Simple_repeat Simple_repeat 4 46 0 219 69 0 0 chr1 45622742 45622771 -197041582 + (CGGGGG)n Simple_repeat Simple_repeat 2 30 0 465 284 60 25 chr1 45623063 45623264 -197041089 + L2 LINE L2 2565 2772 -542 333 294 35 19 chr1 45624075 45624218 -197040135 + MIR SINE MIR 20 161 -71 2307 96 0 26 chr1 45624320 45624632 -197039721 - AluSg1 SINE Alu -5 304 1 232 130 0 0 chr1 45624653 45624699 -197039654 - Alu SINE Alu 0 303 258 608 212 38 55 chr1 45625185 45625233 -197039120 - Charlie2 DNA MER1_type -1 2861 2814 2110 147 0 13 chr1 45625233 45625539 -197038814 + AluJb SINE Alu 1 302 -10 608 212 38 55 chr1 45625539 45625644 -197038709 - Charlie2 DNA MER1_type -48 2814 2711 2027 136 3 13 chr1 45625644 45625953 -197038400 - AluSx SINE Alu -6 306 1 608 212 38 55 chr1 45625953 45626034 -197038319 - Charlie2 DNA MER1_type -151 2711 2630 3948 198 23 110 chr1 45626052 45626578 -197037775 - L1M4 LINE L1 -1701 4509 3939 2413 103 7 0 chr1 45626578 45626888 -197037465 - AluSx SINE Alu 0 312 1 3948 198 23 110 chr1 45626888 45626987 -197037366 - L1M4 LINE L1 -2271 3939 3833 2455 92 0 0 chr1 45626987 45627293 -197037060 - AluY SINE Alu -5 306 1 3948 198 23 110 chr1 45627293 45627365 -197036988 - L1M4 LINE L1 -2377 3833 3756 2277 117 3 0 chr1 45627365 45627673 -197036680 - AluSx SINE Alu -3 309 1 3948 198 23 110 chr1 45627673 45628440 -197035913 - L1M4 LINE L1 -2454 3756 3170 3154 135 44 18 chr1 45628448 45629130 -197035223 - L1MCa LINE L1 -4794 1632 933 4521 150 150 46 chr1 45629130 45630561 -197033792 + pTR5 LTR ERV1 744 2438 0 747 176 11 43 chr1 45630564 45630751 -197033602 - L1MCa LINE L1 -5489 937 757 984 188 53 39 chr1 45630751 45630958 -197033395 + AluJo SINE Alu 87 296 -16 931 221 0 15 chr1 45630961 45631160 -197033193 - L1MCa LINE L1 -5658 768 573 2320 206 69 51 chr1 45631188 45631470 -197032883 - L1MCa LINE L1 -5783 643 367 1951 155 3 7 chr1 45631470 45631766 -197032587 - AluJo SINE Alu -17 295 1 2320 206 69 51 chr1 45631766 45632110 -197032243 - L1MCa LINE L1 -6059 367 6 1456 240 47 32 chr1 45632090 45632555 -197031798 - L1M4 LINE L1 -4608 1533 1254 * 849 143 0 0 chr1 45632555 45632688 -197031665 - FLAM_C SINE Alu 0 133 1 1456 240 47 32 chr1 45632688 45633034 -197031319 - L1M4 LINE L1 -4887 1254 915 306 281 0 12 chr1 45633205 45633288 -197031065 + L1MC4 LINE L1 1995 6983 -1339 180 111 0 0 chr1 45633288 45633315 -197031038 + (TA)n Simple_repeat Simple_repeat 1 27 0 236 270 0 0 chr1 45633316 45633405 -197030948 - L1MC4 LINE L1 -1340 6702 6614 556 294 93 59 chr1 45633422 45633776 -197030577 - L1M4 LINE L1 -5525 606 241 546 235 13 40 chr1 45633777 45633926 -197030427 - Charlie2 DNA MER1_type -2635 147 3 2261 233 14 37 chr1 45634090 45634657 -197029696 + MLT2B3 LTR ERVL 1 554 0 15915 170 60 42 chr1 45634658 45636088 -197028265 + ERVL-B3 LTR ERVL 2 1404 -4360 1917 135 0 28 chr1 45636088 45636376 -197027977 + AluSx SINE Alu 24 303 -9 15915 170 60 42 chr1 45636376 45638206 -197026147 + ERVL-B3 LTR ERVL 1404 3322 -2442 1711 148 82 3 chr1 45638206 45638510 -197025843 - MER7A DNA MER2_type 0 346 21 14858 134 20 22 chr1 45638517 45640959 -197023394 + ERVL-B3 LTR ERVL 3321 5757 -7 2252 230 23 52 chr1 45640959 45641167 -197023186 + MLT2B3 LTR ERVL 1 214 -340 2167 136 3 0 chr1 45641167 45641475 -197022878 + AluSg SINE Alu 1 309 -1 2252 230 23 52 chr1 45641475 45641780 -197022573 + MLT2B3 LTR ERVL 214 499 -55 27 73 0 0 chr1 45642226 45642281 -197022072 + AT_rich Low_complexity Low_complexity 1 55 0 1052 154 6 0 chr1 45644271 45644433 -197019920 - AluJb SINE Alu -14 298 136 752 279 95 31 chr1 45644887 45645277 -197019076 + MLT1K LTR MaLR 63 535 -53 248 263 0 0 chr1 45645465 45645522 -197018831 + MIR SINE MIR 103 159 -103 26 0 0 0 chr1 45645602 45645628 -197018725 + AT_rich Low_complexity Low_complexity 1 26 0 15806 193 14 7 chr1 45645951 45652287 -197012066 + L1PB1 LINE L1 15 6683 -184 2450 82 0 0 chr1 45652287 45652591 -197011762 + AluY SINE Alu 1 304 -7 15806 193 14 7 chr1 45652591 45652770 -197011583 + L1PB1 LINE L1 6683 6859 -8 37 23 0 0 chr1 45652770 45652814 -197011539 + AT_rich Low_complexity Low_complexity 1 44 0 2025 128 35 0 chr1 45653613 45653902 -197010451 - AluSx SINE Alu -13 299 1 607 204 9 0 chr1 45653958 45654066 -197010287 - MER5B DNA MER1_type -69 109 1 364 299 244 0 chr1 45654175 45654302 -197010051 + MIR SINE MIR 1 158 -104 284 161 25 205 chr1 45657118 45657279 -197007074 + MIR SINE MIR 131 262 0 1924 139 0 23 chr1 45657279 45657582 -197006771 + AluJb SINE Alu 1 296 -16 350 283 81 63 chr1 45657601 45657989 -197006364 - L1M4 LINE L1 -1907 4941 4546 361 289 109 73 chr1 45658974 45659413 -197004940 - L1M4 LINE L1 -5922 927 473 876 257 73 19 chr1 45660808 45660831 -197003522 - L1MC4 LINE L1 0 8042 8022 2193 119 3 3 chr1 45660831 45661141 -197003212 + AluSx SINE Alu 1 310 -2 876 257 73 19 chr1 45661141 45661530 -197002823 - L1MC4 LINE L1 -20 8022 7608 790 197 0 30 chr1 45661533 45661665 -197002688 - FLAM_C SINE Alu -10 133 6 224 278 19 0 chr1 45661717 45661771 -197002582 + (CA)n Simple_repeat Simple_repeat 2 56 0 1647 248 26 7 chr1 45661771 45662190 -197002163 - L1MC4 LINE L1 -459 7583 7157 2213 104 0 7 chr1 45662418 45662707 -197001646 + AluSx SINE Alu 1 287 -25 307 313 117 23 chr1 45662930 45663230 -197001123 - L1M4 LINE L1 -2293 3853 3526 1854 107 0 4 chr1 45663233 45663486 -197000867 + AluSg SINE Alu 52 303 -7 234 265 84 0 chr1 45663555 45663638 -197000715 + L1ME LINE L1 5785 5874 -288 893 286 65 26 chr1 45663798 45664309 -197000044 - L1ME LINE L1 -451 5719 5167 2315 115 0 0 chr1 45664309 45664621 -196999732 - AluSx SINE Alu 0 312 1 893 286 65 26 chr1 45664621 45664855 -196999498 - L1ME LINE L1 -1003 5167 4944 676 195 28 14 chr1 45664914 45665196 -196999157 - L1MD2 LINE L1 -10 6349 6015 621 168 31 21 chr1 45665229 45665503 -196998850 + L1ME1 LINE L1 5271 5667 -499 7390 169 109 26 chr1 45665503 45667044 -196997309 + MER52A LTR ERV1 1 1755 0 683 241 6 0 chr1 45667044 45667214 -196997139 + L1ME1 LINE L1 5664 5834 -332 999 198 27 85 chr1 45667322 45667651 -196996702 + L1ME1 LINE L1 5803 6112 -54 2520 84 0 0 chr1 45667700 45668008 -196996345 - AluY SINE Alu -3 308 1 825 268 14 38 chr1 45668008 45668217 -196996136 - MLT1I LTR MaLR -72 337 134 462 275 100 9 chr1 45668217 45668446 -196995907 - L1MEd LINE L1 -3686 2443 2194 890 155 19 13 chr1 45668455 45668610 -196995743 - AluJo/FRAM SINE Alu 0 312 157 617 146 0 0 chr1 45668611 45668700 -196995653 - AluJ/FLAM SINE Alu -212 100 12 764 304 34 8 chr1 45669058 45669324 -196995029 - L1MEd LINE L1 -5732 387 115 8063 222 41 16 chr1 45669351 45671876 -196992477 + L1PA15 LINE L1 1235 3846 -2951 408 40 0 0 chr1 45671876 45671926 -196992427 + (CA)n Simple_repeat Simple_repeat 2 51 0 8063 222 41 16 chr1 45671926 45672198 -196992155 + L1PA15 LINE L1 3846 4109 -2688 1235 125 0 0 chr1 45672326 45672502 -196991851 + AluSp SINE Alu 138 313 0 9964 153 12 12 chr1 45672505 45675140 -196989213 + L1PA15 LINE L1 4154 6784 -32 1836 184 8 50 chr1 45676140 45676188 -196988165 - L1MB1 LINE L1 -1 6167 6119 2328 100 0 3 chr1 45676188 45676487 -196987866 - AluSq SINE Alu -15 298 1 1836 184 8 50 chr1 45676487 45676840 -196987513 - L1MB1 LINE L1 -49 6119 5783 1435 45 28 6 chr1 45676841 45677018 -196987335 - MLT2A2 LTR ERVL -10 443 263 1101 158 24 0 chr1 45677121 45677286 -196987067 + AluJb SINE Alu 121 289 -23 302 208 52 81 chr1 45677297 45677519 -196986834 - L1ME4a LINE L1 -209 5912 5697 267 256 12 70 chr1 45677578 45677596 -196986757 + MIR SINE MIR 64 81 -127 2343 98 0 0 chr1 45677596 45677891 -196986462 - AluSc SINE Alu -14 295 1 267 256 12 70 chr1 45677891 45677958 -196986395 + MIR SINE MIR 81 145 -63 380 257 43 100 chr1 45677958 45678168 -196986185 - L1ME4a LINE L1 -521 5600 5403 253 237 0 0 chr1 45678440 45678499 -196985854 + MIR SINE MIR 204 262 0 645 261 108 70 chr1 45679471 45679942 -196984411 + LTR16C LTR ERVL 3 491 0 452 269 62 31 chr1 45679943 45680103 -196984250 - L1ME3 LINE L1 -302 5860 5696 2512 47 0 13 chr1 45680103 45680404 -196983949 - AluY SINE Alu -14 297 1 5027 169 78 32 chr1 45680465 45681497 -196982856 + Charlie1a DNA MER1_type 1 984 -1777 3098 113 34 19 chr1 45681497 45681975 -196982378 + L1MA5A LINE L1 5808 6292 -5 2195 122 0 0 chr1 45681983 45682278 -196982075 + AluSx SINE Alu 1 295 -17 5027 169 78 32 chr1 45682278 45682423 -196981930 + Charlie1a DNA MER1_type 990 1127 -1634 2032 137 6 16 chr1 45682423 45682737 -196981616 - AluJo SINE Alu -1 311 1 5027 169 78 32 chr1 45682737 45682838 -196981515 + Charlie1a DNA MER1_type 1127 1433 -22 258 200 347 0 chr1 45682839 45682914 -196981439 - L1ME3 LINE L1 -514 5648 5548 334 282 66 84 chr1 45683156 45683383 -196980970 + HAL1 LINE L1 1 223 -2284 360 239 0 0 chr1 45683522 45683593 -196980760 + MIR SINE MIR 159 229 -33 1744 233 83 31 chr1 45683612 45683942 -196980411 + HAL1 LINE L1 859 1170 -1337 905 137 0 43 chr1 45683942 45684081 -196980272 + FLAM_C SINE Alu 1 133 0 1744 233 83 31 chr1 45684081 45684700 -196979653 + HAL1 LINE L1 1170 1922 -585 342 183 17 0 chr1 45684720 45684780 -196979573 + FLAM_A SINE Alu 12 72 -61 328 273 71 7 chr1 45684808 45684962 -196979391 + HAL1 LINE L1 2007 2170 -337 183 301 178 0 chr1 45685123 45685196 -196979157 + L2 LINE L2 2229 2314 -1000 333 0 0 0 chr1 45685259 45685296 -196979057 + (CA)n Simple_repeat Simple_repeat 1 37 0 1748 147 33 39 chr1 45685696 45686003 -196978350 + AluJo SINE Alu 1 305 -7 988 185 31 9 chr1 45686005 45686215 -196978138 - L1MB2 LINE L1 -95 6076 5855 334 265 0 12 chr1 45686197 45686280 -196978073 - L1MB2 LINE L1 -514 5607 5526 * 712 230 38 28 chr1 45686408 45686621 -196977732 + MIR SINE MIR 47 261 -1 219 264 0 69 chr1 45686786 45686873 -196977480 - MIR SINE MIR -70 192 112 187 109 0 43 chr1 45686997 45687043 -196977310 + (CCCCG)n Simple_repeat Simple_repeat 5 48 0 24 32 0 0 chr1 45687121 45687152 -196977201 + GC_rich Low_complexity Low_complexity 1 31 0 214 149 43 0 chr1 45687369 45687416 -196976937 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 339 269 75 8 chr1 45687546 45687680 -196976673 - MIR3 SINE MIR -63 145 3 180 0 0 0 chr1 45687738 45687758 -196976595 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 264 300 13 0 chr1 45688052 45688140 -196976213 - MIR SINE MIR -68 140 63 350 270 111 62 chr1 45688644 45688951 -196975402 - L1MC4a LINE L1 -1913 5895 5574 6563 29 0 3 chr1 45688986 45689740 -196974613 - L1PA5 LINE L1 0 6154 5403 865 67 0 0 chr1 45689743 45689848 -196974505 - AluSg/x SINE Alu -20 290 186 2110 116 0 0 chr1 45690291 45690576 -196973777 + AluSx SINE Alu 1 285 -27 305 116 14 82 chr1 45690576 45690722 -196973631 + (TA)n Simple_repeat Simple_repeat 1 136 0 224 58 13 142 chr1 45690791 45690946 -196973407 + (TA)n Simple_repeat Simple_repeat 2 136 0 405 30 0 45 chr1 45691086 45691152 -196973201 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 0 0 0 chr1 45692110 45692130 -196972223 + (A)n Simple_repeat Simple_repeat 1 20 0 208 286 36 62 chr1 45693282 45693394 -196970959 + MIR SINE MIR 79 187 -75 1893 163 47 71 chr1 45693414 45693472 -196970881 - MSTD LTR MaLR 0 396 338 180 0 0 0 chr1 45693472 45693492 -196970861 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1698 148 10 28 chr1 45693492 45693783 -196970570 - AluJb SINE Alu -26 286 1 1893 163 47 71 chr1 45693783 45694129 -196970224 - MSTD LTR MaLR -56 340 1 2078 64 14 43 chr1 45694397 45694577 -196969776 + AluY SINE Alu 1 172 -139 3832 89 2 8 chr1 45694577 45695091 -196969262 + MER9 LTR ERVK 1 511 0 2078 64 14 43 chr1 45695091 45695192 -196969161 + AluY SINE Alu 172 274 -37 220 0 27 54 chr1 45695192 45695229 -196969124 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 460 168 44 35 chr1 45695234 45695347 -196969006 - MER112 DNA MER1_type -130 130 17 1718 134 92 18 chr1 45695427 45695711 -196968642 - AluJo SINE Alu -7 305 1 456 225 56 21 chr1 45695994 45696012 -196968341 - L2 LINE L2 -4 3309 3293 2247 82 37 3 chr1 45696012 45696306 -196968047 + AluSc SINE Alu 1 304 -5 456 225 56 21 chr1 45696306 45696429 -196967924 - L2 LINE L2 -20 3293 3163 24 0 0 0 chr1 45697498 45697522 -196966831 + AT_rich Low_complexity Low_complexity 1 24 0 519 267 50 68 chr1 45698571 45698792 -196965561 + MIR SINE MIR 45 261 -1 208 324 19 0 chr1 45698927 45699032 -196965321 - MIR SINE MIR -21 241 135 2244 93 7 0 chr1 45699231 45699521 -196964832 - AluSx SINE Alu -15 297 6 200 328 0 0 chr1 45699839 45699900 -196964453 + L2 LINE L2 3207 3267 -5 2199 88 11 3 chr1 45699940 45700225 -196964128 + AluSc SINE Alu 3 289 -20 453 36 0 0 chr1 45700229 45700284 -196964069 + (TG)n Simple_repeat Simple_repeat 2 56 0 473 261 104 36 chr1 45700703 45701040 -196963313 - L1M4 LINE L1 -2658 3488 3129 374 255 128 63 chr1 45702823 45703336 -196961017 - L2 LINE L2 -93 3220 2672 1869 60 0 4 chr1 45703613 45703846 -196960507 - HERVH LTR ERV1 -3990 3723 3492 828 169 20 0 chr1 45703836 45703984 -196960369 - HERVH LTR ERV1 -4423 3290 3140 * 16556 96 6 16 chr1 45703978 45706356 -196957997 - HERVH LTR ERV1 -4726 2987 635 402 196 0 0 chr1 45708627 45708719 -196955634 + G-rich Low_complexity Low_complexity 2 93 0 24 0 0 0 chr1 45760552 45760576 -196903777 + AT_rich Low_complexity Low_complexity 1 24 0 576 267 50 68 chr1 45761625 45761846 -196902507 + MIR SINE MIR 45 261 -1 232 324 19 0 chr1 45761981 45762086 -196902267 - MIR SINE MIR -21 241 135 2268 93 3 0 chr1 45762285 45762576 -196901777 - AluSx SINE Alu -15 297 6 221 318 15 0 chr1 45762889 45762955 -196901398 + L2 LINE L2 3201 3267 -5 2151 91 11 3 chr1 45762995 45763280 -196901073 + AluSc SINE Alu 3 289 -20 468 51 0 0 chr1 45763284 45763343 -196901010 + (TG)n Simple_repeat Simple_repeat 2 60 0 3258 174 48 5 chr1 45764009 45764508 -196899845 - MSTB-int LTR MaLR -1002 649 116 1737 171 21 0 chr1 45764508 45764795 -196899558 - AluJb SINE Alu -19 293 1 3258 174 48 5 chr1 45764795 45764917 -196899436 - MSTB-int LTR MaLR -1535 116 1 2422 172 57 7 chr1 45764917 45765323 -196899030 - MSTB LTR MaLR 0 426 1 447 203 0 28 chr1 45765549 45765675 -196898678 + LTR33A LTR ERVL 447 519 -4 288 258 34 22 chr1 45766116 45766205 -196898148 - MIR SINE MIR -70 192 103 262 243 131 75 chr1 45766413 45766520 -196897833 + LTR48 LTR ERV1 5 117 -670 * 1195 221 95 33 chr1 45766509 45766962 -196897391 + LTR29 LTR ERV1 137 595 0 2322 159 116 2 chr1 45766992 45767406 -196896947 + LOR1b LTR ERV1 1 461 0 1851 162 14 10 chr1 45767958 45768255 -196896098 + AluJb SINE Alu 1 298 -14 317 281 35 26 chr1 45768393 45768507 -196895846 + L2 LINE L2 2651 2765 -549 1337 177 63 41 chr1 45768660 45768959 -196895394 + AluJo SINE Alu 6 310 0 261 314 48 9 chr1 45768963 45769068 -196895285 + L2 LINE L2 2799 2907 -407 3126 215 28 43 chr1 45769386 45769855 -196894498 + L1M4 LINE L1 2806 3256 -2890 787 195 0 0 chr1 45769855 45769973 -196894380 + FLAM_C SINE Alu 1 118 -15 3126 215 28 43 chr1 45769973 45770443 -196893910 + L1M4 LINE L1 3256 3731 -2415 247 330 9 46 chr1 45770449 45770558 -196893795 + L2 LINE L2 2790 2894 -420 1925 132 0 48 chr1 45770637 45770948 -196893405 - AluSq SINE Alu -17 296 1 23 78 0 0 chr1 45770948 45770999 -196893354 + AT_rich Low_complexity Low_complexity 1 51 0 2597 208 112 15 chr1 45771001 45771589 -196892764 + MLT2F LTR ERVL 5 649 -14 263 233 195 19 chr1 45771627 45771786 -196892567 + L1ME4a LINE L1 5718 5904 -217 7519 112 11 14 chr1 45771978 45773020 -196891333 + HSMAR2 DNA Mariner 202 1242 -60 1746 169 0 27 chr1 45773020 45773316 -196891037 - AluJo SINE Alu -24 288 1 7519 112 11 14 chr1 45773316 45773377 -196890976 + HSMAR2 DNA Mariner 1242 1302 0 191 316 42 21 chr1 45773497 45773592 -196890761 - L2 LINE L2 -77 3236 3140 24 32 0 0 chr1 45774031 45774062 -196890291 + AT_rich Low_complexity Low_complexity 1 31 0 1286 122 0 11 chr1 45774115 45774303 -196890050 + AluJb SINE Alu 1 186 -126 401 149 55 32 chr1 45774313 45774410 -196889943 - L1ME LINE L1 -527 5594 5499 351 197 0 0 chr1 45774699 45774760 -196889593 + L2 LINE L2 3253 3313 0 1244 168 10 0 chr1 45775338 45775535 -196888818 - AluJo SINE Alu -107 205 7 345 82 0 0 chr1 45775543 45775592 -196888761 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 1243 164 5 0 chr1 45775600 45775795 -196888558 - AluSp SINE Alu -9 304 109 413 115 0 125 chr1 45775795 45775891 -196888462 - L1MA5A LINE L1 -59 6238 6155 6644 176 31 3 chr1 45776110 45777271 -196887082 + MSTB-int LTR MaLR 459 1651 0 2318 151 43 69 chr1 45777271 45777452 -196886901 + MSTB LTR MaLR 1 185 -241 1643 171 3 35 chr1 45777452 45777767 -196886586 + AluJb SINE Alu 1 305 -7 2318 151 43 69 chr1 45777767 45778022 -196886331 + MSTB LTR MaLR 185 426 0 3605 221 31 23 chr1 45778022 45778818 -196885535 - MER21B LTR ERV1 -60 803 1 245 330 19 10 chr1 45778833 45778936 -196885417 - LTR33A LTR ERVL -361 162 59 1701 157 30 30 chr1 45779257 45779556 -196884797 + AluJo SINE Alu 1 299 -13 818 236 7 0 chr1 45779587 45779735 -196884618 + FAM SINE Alu 14 162 -23 32 57 0 0 chr1 45779761 45779814 -196884539 + AT_rich Low_complexity Low_complexity 1 53 0 1422 304 70 76 chr1 45779842 45780295 -196884058 - ERVL LTR ERVL -913 4851 4404 2417 104 0 0 chr1 45780295 45780604 -196883749 + AluSx SINE Alu 1 309 -3 1422 304 70 76 chr1 45780604 45780955 -196883398 - ERVL LTR ERVL -1360 4404 4052 8005 155 48 31 chr1 45780962 45781763 -196882590 + L1MCa LINE L1 4 790 -5636 219 36 0 0 chr1 45781763 45781791 -196882562 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8005 155 48 31 chr1 45781791 45782557 -196881796 + L1MCa LINE L1 790 1598 -4828 937 147 86 37 chr1 45782557 45782720 -196881633 + AluJb SINE Alu 1 171 -141 438 63 95 0 chr1 45782722 45782785 -196881568 - L1MCa LINE L1 -4205 2221 2153 783 158 0 8 chr1 45782785 45782905 -196881448 + AluJb SINE Alu 174 292 -20 1716 124 4 38 chr1 45782907 45783173 -196881180 + AluJo SINE Alu 2 258 -54 497 111 42 0 chr1 45783193 45783265 -196881088 + L1MCa LINE L1 1588 1662 -4764 1219 199 35 9 chr1 45783265 45783439 -196880914 + AluJb SINE Alu 1 184 -128 191 86 0 29 chr1 45783439 45783474 -196880879 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 1219 199 35 9 chr1 45783474 45783525 -196880828 + AluJb SINE Alu 184 232 -80 1210 127 19 9 chr1 45783525 45783738 -196880615 + L1MCa LINE L1 2263 2477 -3949 465 117 0 0 chr1 45783738 45783798 -196880555 + AluJb SINE Alu 233 292 -20 965 133 0 0 chr1 45783809 45783944 -196880409 + AluJo SINE Alu 1 135 -177 3598 192 42 27 chr1 45783950 45784830 -196879523 + L1MCa LINE L1 1743 2608 -3818 1822 179 137 16 chr1 45784830 45785210 -196879143 - MSTB LTR MaLR 0 426 1 3598 192 42 27 chr1 45785210 45785641 -196878712 + L1MCa LINE L1 2608 3089 -3337 2092 115 73 126 chr1 45785641 45786093 -196878260 + MSTA LTR MaLR 1 428 0 3598 192 42 27 chr1 45786093 45786331 -196878022 + L1MCa LINE L1 3089 3322 -3104 * 4321 175 25 14 chr1 45786330 45787171 -196877182 + L1M3f LINE L1 360 1209 -4119 3209 212 30 70 chr1 45787165 45788077 -196876276 + L1MCa LINE L1 3315 4185 -2241 * 1671 184 8 99 chr1 45788077 45788479 -196875874 - MLT1A1 LTR MaLR 0 365 1 3209 212 30 70 chr1 45788479 45788563 -196875790 + L1MCa LINE L1 4185 4271 -2155 2391 123 16 19 chr1 45788545 45788919 -196875434 + L1MC/D LINE L1 5381 5753 -580 * 1429 166 53 53 chr1 45788975 45789258 -196875095 + AluJo SINE Alu 7 289 -23 299 114 0 0 chr1 45789261 45789305 -196875048 + Tigger2 DNA MER2_type 1013 1056 -1662 2042 315 37 62 chr1 45789396 45790520 -196873833 - ERVL LTR ERVL -3501 2263 1171 1863 148 0 27 chr1 45790520 45790818 -196873535 - AluJb SINE Alu -22 290 1 2042 315 37 62 chr1 45790818 45790910 -196873443 - ERVL LTR ERVL -4593 1171 1078 8285 121 83 127 chr1 45790910 45791308 -196873045 + Tigger2 DNA MER2_type 1 415 -2303 1722 139 4 0 chr1 45791308 45791566 -196872787 - AluSx SINE Alu -10 302 44 8285 121 83 127 chr1 45791566 45792168 -196872185 + Tigger2 DNA MER2_type 415 1042 -1676 800 187 0 0 chr1 45792168 45792291 -196872062 + FRAM SINE Alu 31 153 -23 8285 121 83 127 chr1 45792291 45792468 -196871885 + Tigger2 DNA MER2_type 1042 1225 -1493 990 135 0 0 chr1 45792468 45792601 -196871752 + FLAM_C SINE Alu 1 133 0 8285 121 83 127 chr1 45792601 45793451 -196870902 + Tigger2 DNA MER2_type 1225 1920 -798 2304 44 3 53 chr1 45793451 45793772 -196870581 + AluY SINE Alu 1 305 -6 8285 121 83 127 chr1 45793772 45794534 -196869819 + Tigger2 DNA MER2_type 1920 2714 -4 1713 181 0 3 chr1 45795441 45795756 -196868597 - AluJb SINE Alu 0 314 1 216 97 0 0 chr1 45796585 45796616 -196867737 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1391 166 92 26 chr1 45796717 45796988 -196867365 - AluJb SINE Alu -21 291 3 29 60 0 0 chr1 45797948 45797998 -196866355 + AT_rich Low_complexity Low_complexity 1 50 0 3633 123 17 32 chr1 45798046 45798274 -196866079 - MER41B LTR ERV1 0 635 405 2246 53 14 11 chr1 45798274 45798585 -196865768 - AluY SINE Alu 0 312 1 3633 123 17 32 chr1 45798585 45798955 -196865398 - MER41B LTR ERV1 -230 405 45 1141 186 5 0 chr1 45799180 45799368 -196864985 + AluSg/x SINE Alu 109 297 -15 457 229 88 88 chr1 45799368 45799524 -196864829 - L1ME1 LINE L1 -110 6056 5898 3281 151 6 42 chr1 45799524 45799862 -196864491 - LTR26B LTR ERV1 -1 530 218 2077 121 0 23 chr1 45799862 45800169 -196864184 - AluSx SINE Alu -12 300 1 3281 151 6 42 chr1 45800169 45800380 -196863973 - LTR26B LTR ERV1 -313 218 1 457 229 88 88 chr1 45800380 45800415 -196863938 - L1ME1 LINE L1 -267 5899 5865 2362 108 0 0 chr1 45800475 45800782 -196863571 - AluSx SINE Alu -5 307 1 404 303 0 25 chr1 45800877 45800996 -196863357 + MER5B DNA MER1_type 60 175 -3 444 303 21 0 chr1 45801430 45801575 -196862778 + L1ME4a LINE L1 5740 5887 -234 27 51 0 17 chr1 45801697 45801723 -196862630 + AT_rich Low_complexity Low_complexity 1 26 -32 756 153 32 0 chr1 45801723 45801847 -196862506 + FLAM_C SINE Alu 1 128 -5 27 51 0 17 chr1 45801847 45801879 -196862474 + AT_rich Low_complexity Low_complexity 26 58 0 4019 132 61 33 chr1 45801977 45802649 -196861704 - LTR8 LTR ERV1 0 691 1 2489 82 3 0 chr1 45802790 45803096 -196861257 - AluSp SINE Alu -6 307 1 676 269 164 29 chr1 45803267 45803505 -196860848 - MLT1J LTR MaLR -118 393 124 514 211 77 45 chr1 45803526 45803682 -196860671 - MLT1J LTR MaLR -341 170 10 3079 131 93 52 chr1 45803912 45804483 -196859870 - LTR49 LTR ERV1 -1 594 1 1535 116 27 0 chr1 45804737 45804961 -196859392 + L1PA14 LINE L1 5930 6159 -2 767 196 38 19 chr1 45805170 45805328 -196859025 - MER77 LTR ERV1 -4 601 441 * 1199 206 24 28 chr1 45805303 45805550 -196858803 - MER21B LTR ERV1 -339 524 279 998 130 7 7 chr1 45805550 45805704 -196858649 - LTR23 LTR ERV1 0 437 284 17953 156 50 29 chr1 45805709 45805867 -196858486 - L1MA4A LINE L1 -1 7721 7568 1808 153 13 16 chr1 45805867 45806043 -196858310 - AluJo SINE Alu 0 312 136 2296 74 3 3 chr1 45806043 45806371 -196857982 - AluY SINE Alu 0 311 1 1808 153 13 16 chr1 45806371 45806507 -196857846 - AluJo SINE Alu -176 136 1 17953 156 50 29 chr1 45806507 45807098 -196857255 - L1MA4A LINE L1 -154 7568 6991 1473 109 21 63 chr1 45807098 45807337 -196857016 - AluSx SINE Alu -83 229 1 17953 156 50 29 chr1 45807337 45809039 -196855314 - L1MA4A LINE L1 -731 6991 5326 1664 198 3 3 chr1 45809039 45809332 -196855021 - AluJo SINE Alu -11 301 9 17953 156 50 29 chr1 45809332 45811130 -196853223 - L1MA4A LINE L1 -2396 5326 3567 2780 84 6 8 chr1 45811130 45811486 -196852867 + THE1A LTR MaLR 1 355 0 12337 96 13 1 chr1 45811486 45813047 -196851306 + THE1A-int LTR MaLR 1 1580 0 2831 93 3 0 chr1 45813047 45813401 -196850952 + THE1A LTR MaLR 1 355 0 17953 156 50 29 chr1 45813401 45814184 -196850169 - L1MA4A LINE L1 -4155 3567 2802 2146 88 56 0 chr1 45814184 45814468 -196849885 - AluSg SINE Alu -2 308 9 17953 156 50 29 chr1 45814468 45814532 -196849821 - L1MA4A LINE L1 -4920 2802 2741 2239 125 0 0 chr1 45814532 45814837 -196849516 - AluSx SINE Alu -7 305 1 17953 156 50 29 chr1 45814837 45814933 -196849420 - L1MA4A LINE L1 -4981 2741 2648 2252 125 3 0 chr1 45814933 45815244 -196849109 - AluSx SINE Alu 0 312 1 17953 156 50 29 chr1 45815244 45816884 -196847469 - L1MA4A LINE L1 -5074 2648 754 1052 157 0 0 chr1 45816886 45817033 -196847320 + AluSg/x SINE Alu 140 286 -26 2348 86 13 0 chr1 45817044 45817345 -196847008 + AluSp SINE Alu 1 305 -8 1993 139 10 0 chr1 45817384 45817672 -196846681 - AluSx SINE Alu -21 291 1 1180 140 18 70 chr1 45817673 45817901 -196846452 - LTR23 LTR ERV1 -221 216 1 1065 192 82 78 chr1 45817901 45818182 -196846171 - MER21B LTR ERV1 -581 282 1 1156 201 0 43 chr1 45818190 45818342 -196846011 + AluJo SINE Alu 1 141 -171 2701 107 21 19 chr1 45818342 45818716 -196845637 - THE1C LTR MaLR 0 375 1 1156 201 0 43 chr1 45818716 45818797 -196845556 + AluJo SINE Alu 141 224 -88 237 33 0 0 chr1 45818812 45818842 -196845511 + (A)n Simple_repeat Simple_repeat 1 30 0 984 182 24 0 chr1 45818862 45819032 -196845321 + MER20 DNA MER1_type 35 208 -11 4106 141 50 38 chr1 45819244 45819613 -196844740 - L1MB8 LINE L1 0 6178 5815 2233 95 34 0 chr1 45819613 45819908 -196844445 - AluSx SINE Alu -7 305 1 4106 141 50 38 chr1 45819908 45820090 -196844263 - L1MB8 LINE L1 -363 5815 5637 2415 78 3 0 chr1 45820090 45820386 -196843967 + AluY SINE Alu 1 297 -14 4106 141 50 38 chr1 45820386 45820634 -196843719 - L1MB8 LINE L1 -541 5637 5368 1641 148 58 7 chr1 45820710 45820987 -196843366 + AluJo SINE Alu 11 301 -11 2454 92 0 0 chr1 45821250 45821555 -196842798 + AluSg SINE Alu 3 307 -3 1011 208 0 17 chr1 45822770 45822943 -196841410 + FAM SINE Alu 1 170 -5 207 100 0 0 chr1 45823122 45823152 -196841201 + (A)n Simple_repeat Simple_repeat 1 30 0 2155 131 0 6 chr1 45823154 45823489 -196840864 + AluSq SINE Alu 1 313 0 1623 209 150 15 chr1 45823638 45824045 -196840308 + MLT1C LTR MaLR 6 467 0 487 246 193 53 chr1 45824141 45824328 -196840025 + MIR SINE MIR 20 232 -30 1048 161 6 0 chr1 45824382 45824543 -196839810 + AluSp SINE Alu 137 298 -15 186 326 0 0 chr1 45824577 45824626 -196839727 + L3 LINE CR1 1173 1221 -356 2049 138 7 0 chr1 45825170 45825460 -196838893 + AluSq SINE Alu 1 292 -21 793 178 0 0 chr1 45825533 45825651 -196838702 + AluJo SINE Alu 2 119 -193 23 33 0 0 chr1 45825651 45825681 -196838672 + AT_rich Low_complexity Low_complexity 1 30 0 821 469 70 15 chr1 45825681 45825774 -196838579 - AluJo SINE Alu -13 289 203 369 0 0 0 chr1 45825774 45825815 -196838538 + (TG)n Simple_repeat Simple_repeat 2 42 0 821 469 70 15 chr1 45825815 45825994 -196838359 - AluJo SINE Alu -99 203 2 1225 162 5 0 chr1 45826000 45826198 -196838155 + AluJo SINE Alu 114 312 0 1928 143 43 0 chr1 45826202 45826502 -196837851 + AluSq SINE Alu 1 313 0 2324 95 3 3 chr1 45826561 45826865 -196837488 + AluY SINE Alu 1 304 -7 762 233 117 10 chr1 45827761 45827967 -196836386 - MIR SINE MIR -3 259 32 266 158 0 0 chr1 45828277 45828315 -196836038 - MIR SINE MIR -58 150 113 257 254 70 0 chr1 45828321 45828392 -196835961 + MIR SINE MIR 149 224 -38 2781 94 28 5 chr1 45828755 45829150 -196835203 - MLT2A1 LTR ERVL -40 404 1 278 331 191 0 chr1 45829663 45829820 -196834533 + L2 LINE L2 3086 3272 0 281 311 203 0 chr1 45830405 45830553 -196833800 - L2 LINE L2 0 3313 3136 3341 179 72 43 chr1 45830765 45831438 -196832915 + L1MA7 LINE L1 6 702 -4626 2183 107 17 7 chr1 45831438 45831737 -196832616 + AluSx SINE Alu 1 302 -10 3341 179 72 43 chr1 45831737 45831767 -196832586 + L1MA7 LINE L1 702 730 -4598 * 8156 210 57 73 chr1 45831748 45832550 -196831803 + L1MA7 LINE L1 2354 3167 -3306 2343 101 3 0 chr1 45832550 45832857 -196831496 - AluSp SINE Alu -5 308 1 8156 210 57 73 chr1 45832857 45833172 -196831181 + L1MA7 LINE L1 3167 3486 -2987 2313 108 0 0 chr1 45833172 45833477 -196830876 + AluY SINE Alu 1 305 -6 8156 210 57 73 chr1 45833477 45834984 -196829369 + L1MA7 LINE L1 3486 5016 -1457 1605 134 48 58 chr1 45834984 45835275 -196829078 + AluJo SINE Alu 1 288 -24 8156 210 57 73 chr1 45835275 45835589 -196828764 + L1MA7 LINE L1 5016 5334 -1139 1670 169 8 4 chr1 45835589 45835855 -196828498 - AluJo SINE Alu -45 267 1 8156 210 57 73 chr1 45835855 45836509 -196827844 + L1MA7 LINE L1 5334 5855 -618 1668 171 10 43 chr1 45836509 45836814 -196827539 + AluJo SINE Alu 1 295 -17 8156 210 57 73 chr1 45836814 45837413 -196826940 + L1MA7 LINE L1 5855 6462 -11 3123 157 9 4 chr1 45837460 45837996 -196826357 + L1MB7 LINE L1 5646 6184 0 225 118 59 59 chr1 45838080 45838148 -196826205 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1922 84 92 4 chr1 45839335 45839596 -196824757 + AluY SINE Alu 2 285 -26 2179 87 0 7 chr1 45839640 45839916 -196824437 - AluSx SINE Alu -15 297 24 2090 103 0 17 chr1 45840186 45840504 -196823849 + AluSx SINE Alu 1 313 0 276 272 83 39 chr1 45840739 45840788 -196823565 - L1ME LINE L1 -330 5791 5746 1580 169 42 26 chr1 45840788 45841095 -196823258 - AluJb SINE Alu 0 312 1 276 272 83 39 chr1 45841095 45841225 -196823128 - L1ME LINE L1 -375 5746 5604 1954 150 3 0 chr1 45841275 45841562 -196822791 + AluSx SINE Alu 1 288 -24 32 26 0 0 chr1 45841562 45841601 -196822752 + AT_rich Low_complexity Low_complexity 1 39 0 638 224 103 6 chr1 45841623 45841779 -196822574 + MIR SINE MIR 92 262 0 450 285 97 111 chr1 45842150 45842837 -196821516 - L2 LINE L2 -4 3309 2643 412 168 159 37 chr1 45842885 45842992 -196821361 - L2 LINE L2 -17 3255 3136 289 295 41 8 chr1 45844983 45845105 -196819248 - MIR SINE MIR -74 188 63 2393 104 0 0 chr1 45845348 45845656 -196818697 - AluSx SINE Alu -4 308 1 570 239 84 62 chr1 45846748 45846974 -196817379 + MER102b DNA MER1_type 109 339 -2 1579 153 20 54 chr1 45847201 45847496 -196816857 + AluJo SINE Alu 14 298 -14 440 225 149 41 chr1 45847602 45847971 -196816382 - L1ME4a LINE L1 -1 6120 5712 413 262 107 13 chr1 45848178 45848327 -196816026 - MIR SINE MIR -52 210 48 2226 84 7 17 chr1 45848330 45848626 -196815727 - AluSx SINE Alu -19 293 1 350 311 25 0 chr1 45848889 45849011 -196815342 + MIR SINE MIR 84 208 -54 374 282 109 30 chr1 45849146 45849348 -196815005 - MLT1K LTR MaLR -191 397 180 2364 84 0 3 chr1 45850058 45850357 -196813996 + AluSq SINE Alu 13 310 -3 1390 139 8 53 chr1 45850482 45850726 -196813627 + AluJo SINE Alu 1 233 -79 245 293 13 0 chr1 45850727 45850802 -196813551 + L2 LINE L2 3188 3263 -9 288 266 69 34 chr1 45851268 45851403 -196812950 + MIR SINE MIR 29 170 -38 507 281 35 78 chr1 45851726 45852034 -196812319 + L2 LINE L2 2782 3076 -196 361 271 75 3 chr1 45852412 45852584 -196811769 + MIR SINE MIR 3 192 -65 212 146 0 21 chr1 45853289 45853337 -196811016 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 439 217 301 10 chr1 45853349 45853552 -196810801 - L1MC4 LINE L1 -141 7901 7640 1939 131 44 7 chr1 45853850 45854147 -196810206 + AluJo SINE Alu 1 308 -4 1042 123 111 0 chr1 45854161 45854332 -196810021 + MER46B DNA MER2_type 1 65 -171 1108 129 49 6 chr1 45854346 45854509 -196809844 - AluSx SINE Alu -138 174 5 418 256 39 109 chr1 45854598 45854883 -196809470 - L1M4 LINE L1 -957 5189 4925 739 166 26 127 chr1 45855576 45855708 -196808645 + MER3 DNA MER1_type 1 145 -64 2238 128 0 0 chr1 45855708 45856020 -196808333 - AluSx SINE Alu 0 312 1 739 166 26 127 chr1 45856020 45856071 -196808282 + MER3 DNA MER1_type 145 160 -49 2037 134 3 0 chr1 45856071 45856385 -196807968 + AluSx SINE Alu 1 315 0 739 166 26 127 chr1 45856385 45856428 -196807925 + MER3 DNA MER1_type 160 206 -3 2421 94 0 3 chr1 45856798 45857107 -196807246 - AluSg SINE Alu -2 308 1 429 220 174 0 chr1 45857110 45857242 -196807111 - MER5A DNA MER1_type 0 189 35 2239 114 0 7 chr1 45857575 45857873 -196806480 - AluSx SINE Alu -16 296 1 1957 135 35 0 chr1 45857927 45858209 -196806144 - AluJb SINE Alu -20 292 1 329 282 17 34 chr1 45858478 45858595 -196805758 - MER5A DNA MER1_type -30 159 45 203 338 41 35 chr1 45858479 45858624 -196805729 + MER5A DNA MER1_type 43 188 -1 * 290 207 135 18 chr1 45858738 45858849 -196805504 - MER113 DNA MER1_type? -397 124 1 396 319 46 9 chr1 45859152 45859368 -196804985 - L2 LINE L2 -236 3036 2813 255 246 215 31 chr1 45859531 45859661 -196804692 - L2 LINE L2 -562 2752 2599 239 260 98 16 chr1 45859899 45860022 -196804331 + L1MC/D LINE L1 5790 5922 -1886 182 304 144 16 chr1 45860781 45860906 -196803447 + MIR3 SINE MIR 5 145 -63 2461 77 0 3 chr1 45861112 45861411 -196802942 + AluSc SINE Alu 1 298 -11 383 282 107 32 chr1 45861528 45861839 -196802514 - L1ME LINE L1 -358 5806 5461 934 223 92 25 chr1 45861903 45862186 -196802167 - L1ME3 LINE L1 -18 6144 5843 624 94 18 176 chr1 45862353 45862462 -196801891 + L1MA5A LINE L1 6155 6230 -67 2460 57 0 0 chr1 45862462 45862768 -196801585 + AluY SINE Alu 1 306 0 624 94 18 176 chr1 45862768 45862827 -196801526 + L1MA5A LINE L1 6230 6297 0 425 241 22 56 chr1 45863608 45863840 -196800513 + L2 LINE L2 1821 2120 -1194 718 338 104 24 chr1 45863921 45864566 -196799787 + L2 LINE L2 2347 3044 -228 2451 87 0 3 chr1 45864740 45865049 -196799304 - AluY SINE Alu -3 308 1 517 226 14 27 chr1 45865374 45865520 -196798833 + MIR SINE MIR 104 247 -15 2731 250 63 74 chr1 45865802 45867489 -196796864 + L1ME3A LINE L1 3163 4830 -1316 2072 119 3 7 chr1 45867499 45867820 -196796533 + AluSx SINE Alu 1 320 0 827 253 53 30 chr1 45867828 45868296 -196796057 + L1ME3A LINE L1 5055 5547 -617 390 272 18 0 chr1 45868307 45868437 -196795916 + L1P4 LINE L1 5597 5729 -432 574 265 52 20 chr1 45869501 45869750 -196794603 + L1ME3A LINE L1 5705 5961 -209 437 119 0 0 chr1 45870081 45870140 -196794213 - Alu SINE Alu -20 292 234 1036 143 0 0 chr1 45870240 45870418 -196793935 + AluSg/x SINE Alu 136 313 0 257 167 0 0 chr1 45870419 45870461 -196793892 + Charlie5 DNA MER1_type 165 206 -2406 2421 94 0 3 chr1 45870831 45871140 -196793213 - AluSg SINE Alu -2 308 1 429 220 174 0 chr1 45871143 45871275 -196793078 - MER5A DNA MER1_type 0 189 35 2239 114 0 7 chr1 45871608 45871906 -196792447 - AluSx SINE Alu -16 296 1 1957 135 35 0 chr1 45871960 45872242 -196792111 - AluJb SINE Alu -20 292 1 329 282 17 34 chr1 45872511 45872628 -196791725 - MER5A DNA MER1_type -30 159 45 203 338 41 35 chr1 45872512 45872657 -196791696 + MER5A DNA MER1_type 43 188 -1 * 290 207 135 18 chr1 45872771 45872882 -196791471 - MER113 DNA MER1_type? -397 124 1 396 319 46 9 chr1 45873185 45873401 -196790952 - L2 LINE L2 -236 3036 2813 255 246 215 31 chr1 45873564 45873694 -196790659 - L2 LINE L2 -562 2752 2599 239 260 98 16 chr1 45873932 45874055 -196790298 + L1MC/D LINE L1 5790 5922 -1886 182 304 144 16 chr1 45874814 45874939 -196789414 + MIR3 SINE MIR 5 145 -63 2268 111 0 0 chr1 45875145 45875442 -196788911 + AluSg SINE Alu 1 297 -13 2045 103 24 10 chr1 45876149 45876439 -196787914 + AluSx SINE Alu 1 294 -18 1452 192 3 57 chr1 45876484 45876781 -196787572 + AluJo SINE Alu 1 281 -31 368 153 0 187 chr1 45877314 45877357 -196786996 + L2 LINE L2 3190 3239 -74 2292 104 0 0 chr1 45877357 45877656 -196786697 - AluY SINE Alu -12 299 1 368 153 0 187 chr1 45877656 45877762 -196786591 + L2 LINE L2 3239 3311 -2 237 281 73 21 chr1 45877798 45877894 -196786459 - L2 LINE L2 -225 3047 2947 2080 114 25 0 chr1 45878159 45878440 -196785913 - AluSx SINE Alu -24 288 1 306 261 78 59 chr1 45878590 45878743 -196785610 - MARNA DNA Mariner -89 497 342 339 342 32 6 chr1 45879445 45879603 -196784750 - L2 LINE L2 -507 2807 2646 353 209 109 40 chr1 45879660 45879859 -196784494 + MER58B DNA MER1_type 47 340 -1 339 207 170 7 chr1 45880005 45880140 -196784213 + L2 LINE L2 2609 2765 -549 205 319 42 0 chr1 45880492 45880564 -196783789 + MIR SINE MIR 117 191 -71 26 0 0 0 chr1 45881553 45881579 -196782774 + GC_rich Low_complexity Low_complexity 1 26 0 31 44 0 0 chr1 45881978 45882023 -196782330 + GC_rich Low_complexity Low_complexity 1 45 0 266 272 299 14 chr1 45883916 45884063 -196780290 - MER5A DNA MER1_type 0 189 1 379 299 166 33 chr1 45885284 45885585 -196778768 + MER102b DNA MER1_type 1 341 0 280 264 228 36 chr1 45885763 45885956 -196778397 - MIR SINE MIR -32 230 1 226 224 0 0 chr1 45886280 45886329 -196778024 + MER58 DNA MER1_type 50 98 -117 2317 73 10 0 chr1 45886331 45886619 -196777734 - AluSq SINE Alu -22 291 1 429 215 0 0 chr1 45886692 45886771 -196777582 - FLAM SINE Alu -27 116 38 2885 161 204 8 chr1 45887221 45887848 -196776505 + Tigger2 DNA MER2_type 4 753 -1965 928 179 118 5 chr1 45887878 45888090 -196776263 + Tigger2 DNA MER2_type 2461 2696 -22 181 324 189 0 chr1 45889026 45889100 -196775253 - MIR SINE MIR -63 145 58 953 140 45 6 chr1 45889100 45889257 -196775096 + AluSg/x SINE Alu 129 291 -21 189 107 0 0 chr1 45889270 45889298 -196775055 + (T)n Simple_repeat Simple_repeat 1 28 0 464 158 26 0 chr1 45890411 45890487 -196773866 - AluJo SINE Alu -30 282 205 287 130 22 0 chr1 45890499 45890545 -196773808 - AluJo SINE Alu -159 143 97 1722 120 124 4 chr1 45890896 45891163 -196773190 - AluSg SINE Alu -9 301 3 206 351 155 6 chr1 45891822 45891996 -196772357 + L2 LINE L2 2439 2638 -676 379 188 0 12 chr1 45891999 45892079 -196772274 - L1MC1 LINE L1 -160 6173 6095 418 240 97 11 chr1 45894347 45894486 -196769867 + MIR SINE MIR 10 154 -63 513 282 308 20 chr1 45897959 45898653 -196765700 - L2 LINE L2 -1442 1872 979 586 172 121 9 chr1 45898664 45898780 -196765573 - AluJb SINE Alu -179 133 5 231 337 96 0 chr1 45899126 45899209 -196765144 - L2 LINE L2 -2987 327 237 1188 207 19 8 chr1 45899370 45899631 -196764722 + AluJo SINE Alu 14 277 -35 2054 121 3 0 chr1 45901971 45902261 -196762092 - AluSc SINE Alu -18 291 1 371 260 0 0 chr1 45902727 45902804 -196761549 - Tigger5 DNA MER2_type -2235 88 12 337 210 62 12 chr1 45902821 45902902 -196761451 + Tigger5 DNA MER2_type 2239 2323 0 1442 108 0 9 chr1 45903850 45904063 -196760290 + AluSc SINE Alu 1 211 -98 972 78 0 0 chr1 45904062 45904191 -196760162 + AluSc SINE Alu 161 289 -20 * 348 240 94 0 chr1 45904248 45904344 -196760009 - L2 LINE L2 -1955 1359 1255 338 265 72 0 chr1 45904344 45904427 -196759926 - L2 LINE L2 -2172 1142 1054 768 85 127 0 chr1 45904429 45904547 -196759806 - Tigger3b DNA MER2_type -128 1104 972 280 191 70 2 chr1 45904549 45904658 -196759695 + AluJo SINE Alu 1 141 -161 1921 91 76 0 chr1 45904681 45904956 -196759397 - AluSg SINE Alu -14 296 1 1714 174 110 23 chr1 45905102 45905493 -196758860 - Tigger3b DNA MER2_type -736 495 71 4823 156 61 46 chr1 45905494 45905825 -196758528 - L1MA4A LINE L1 -7 6998 6673 2107 85 10 13 chr1 45905825 45906131 -196758222 - AluSx SINE Alu -7 305 1 4823 156 61 46 chr1 45906131 45906372 -196757981 - L1MA4A LINE L1 -332 6673 6437 1698 171 0 13 chr1 45906372 45906682 -196757671 - AluJo SINE Alu -6 306 1 4823 156 61 46 chr1 45906682 45907309 -196757044 - L1MA4A LINE L1 -568 6437 5771 886 154 322 9 chr1 45907314 45907541 -196756812 - AluJo SINE Alu -14 298 1 11014 170 39 75 chr1 45907541 45907629 -196756724 - L1MA4A LINE L1 -1092 5756 5666 2186 100 7 3 chr1 45907629 45907928 -196756425 - AluSc SINE Alu -9 300 1 11014 170 39 75 chr1 45907928 45908138 -196756215 - L1MA4A LINE L1 -1182 5666 5450 378 0 0 0 chr1 45908138 45908180 -196756173 + (TA)n Simple_repeat Simple_repeat 2 43 0 2286 69 9 38 chr1 45908181 45908501 -196755852 - AluY SINE Alu 0 311 1 11014 170 39 75 chr1 45908501 45909166 -196755187 - L1MA4A LINE L1 -1398 5450 4763 699 224 0 0 chr1 45909166 45909300 -196755053 + AluSq/x SINE Alu 2 135 -178 11014 170 39 75 chr1 45909300 45909504 -196754849 - L1MA4A LINE L1 -2085 4763 4553 2256 104 0 0 chr1 45909504 45909813 -196754540 - AluSc SINE Alu 0 309 1 11014 170 39 75 chr1 45909813 45909894 -196754459 - L1MA4A LINE L1 -2295 4553 4471 2159 118 0 0 chr1 45909894 45910198 -196754155 - AluSx SINE Alu -8 304 1 11014 170 39 75 chr1 45910198 45910543 -196753810 - L1MA4A LINE L1 -2377 4471 4115 2309 84 0 0 chr1 45910543 45910841 -196753512 - AluSx SINE Alu -14 298 1 11014 170 39 75 chr1 45910841 45911715 -196752638 - L1MA4A LINE L1 -2733 4115 3212 2221 112 3 0 chr1 45911715 45912027 -196752326 - AluSp SINE Alu 0 313 1 11014 170 39 75 chr1 45912027 45913302 -196751051 - L1MA4A LINE L1 -3636 3212 1893 1451 161 96 0 chr1 45913302 45913563 -196750790 - AluJo SINE Alu -16 286 1 11014 170 39 75 chr1 45913563 45913736 -196750617 - L1MA4A LINE L1 -4955 1893 1715 2023 129 7 0 chr1 45913736 45914039 -196750314 - AluSp SINE Alu -8 305 1 11014 170 39 75 chr1 45914039 45914314 -196750039 - L1MA4A LINE L1 -5133 1715 1432 1903 140 14 0 chr1 45914314 45914600 -196749753 - AluSx SINE Alu -18 294 5 11014 170 39 75 chr1 45914600 45915269 -196749084 - L1MA4A LINE L1 -5416 1432 931 580 157 0 0 chr1 45915280 45915363 -196748990 - Tigger3b DNA MER2_type -1148 83 1 919 291 148 36 chr1 45915372 45915743 -196748610 - L2 LINE L2 -2415 899 571 1684 166 7 10 chr1 45915743 45916039 -196748314 + AluJb SINE Alu 9 303 -9 919 291 148 36 chr1 45916039 45916416 -196747937 - L2 LINE L2 -2743 571 67 189 299 85 76 chr1 45916750 45916961 -196747392 - L2 LINE L2 -1208 2106 1894 981 251 236 17 chr1 45917029 45917802 -196746551 + L2 LINE L2 2378 3313 0 818 188 15 74 chr1 45917878 45918080 -196746273 - MLT1A2 LTR MaLR 0 374 185 188 184 79 0 chr1 45918085 45918123 -196746230 + MIR SINE MIR 22 62 -146 206 221 263 0 chr1 45918234 45918329 -196746024 + MIR SINE MIR 137 256 -6 1701 146 26 56 chr1 45918329 45918463 -196745890 + AluJb SINE Alu 1 137 -175 2205 73 45 0 chr1 45918463 45918752 -196745601 + AluSg SINE Alu 1 302 -8 1701 146 26 56 chr1 45918752 45918919 -196745434 + AluJb SINE Alu 137 293 -19 365 313 82 0 chr1 45919285 45919419 -196744934 + LTR16B LTR ERVL 320 464 0 2117 118 0 6 chr1 45919450 45919763 -196744590 + AluSx SINE Alu 1 311 -1 5881 153 56 53 chr1 45919775 45920791 -196743562 + L1M4c LINE L1 18 1029 -5355 2109 99 3 7 chr1 45920791 45921093 -196743260 + AluSp SINE Alu 1 301 -12 5881 153 56 53 chr1 45921093 45921140 -196743213 + L1M4c LINE L1 1029 1074 -5310 709 221 0 0 chr1 45921140 45921271 -196743082 + FLAM_C SINE Alu 3 133 0 5881 153 56 53 chr1 45921271 45921475 -196742878 + L1M4c LINE L1 1074 1290 -5094 450 65 0 65 chr1 45921481 45921558 -196742795 + Alu SINE Alu 238 309 -1 1669 135 28 71 chr1 45921562 45921666 -196742687 + L1M4c LINE L1 1273 1380 -5004 2322 85 0 3 chr1 45921666 45921971 -196742382 + AluSx SINE Alu 1 304 -8 2143 69 3 56 chr1 45921971 45922290 -196742063 + AluY SINE Alu 1 303 -8 1669 135 28 71 chr1 45922290 45922548 -196741805 + L1M4c LINE L1 1378 1620 -4764 1294 180 67 25 chr1 45922548 45922831 -196741522 + AluJb SINE Alu 1 295 -17 706 217 0 0 chr1 45922890 45923019 -196741334 + FLAM_A SINE Alu 1 129 -4 2114 117 10 0 chr1 45923062 45923369 -196740984 + AluSx SINE Alu 1 310 -2 2170 225 55 52 chr1 45923370 45924004 -196740349 + L1M4c LINE L1 2534 3164 -3218 1700 168 3 32 chr1 45924004 45924215 -196740138 + AluJb SINE Alu 1 202 -110 2414 75 0 0 chr1 45924215 45924520 -196739833 + AluSq SINE Alu 1 305 -8 1700 168 3 32 chr1 45924520 45924624 -196739729 + AluJb SINE Alu 202 307 -5 2170 225 55 52 chr1 45924624 45924842 -196739511 + L1M4c LINE L1 3164 3392 -2990 1942 153 0 6 chr1 45924842 45925156 -196739197 + AluJb SINE Alu 1 312 0 2170 225 55 52 chr1 45925156 45925234 -196739119 + L1M4c LINE L1 3392 3468 -2914 1389 199 116 10 chr1 45925214 45925601 -196738752 + L1ME2 LINE L1 5540 5967 -197 * 1909 159 0 0 chr1 45925604 45925900 -196738453 + AluSx SINE Alu 1 296 -16 1007 194 0 5 chr1 45926745 45926936 -196737417 + AluJb SINE Alu 120 309 -3 675 183 73 22 chr1 45926936 45927073 -196737280 - FRAM SINE Alu -32 144 1 2035 125 3 0 chr1 45927272 45927567 -196736786 - AluSq SINE Alu -17 296 1 1795 231 167 33 chr1 45927572 45928172 -196736181 - L1MC4 LINE L1 0 8042 7523 2390 87 3 0 chr1 45928172 45928484 -196735869 + AluSp SINE Alu 1 313 0 195 42 0 0 chr1 45928488 45928512 -196735841 + (TA)n Simple_repeat Simple_repeat 2 25 0 1795 231 167 33 chr1 45928512 45928565 -196735788 - L1MC4 LINE L1 -521 7521 7296 2406 215 109 16 chr1 45928566 45929188 -196735165 - L1MC4 LINE L1 -904 7138 6459 2105 118 3 0 chr1 45929523 45929827 -196734526 - AluSx SINE Alu -7 305 1 729 164 55 23 chr1 45929851 45929979 -196734374 - FLAM_C SINE Alu -10 133 2 600 196 170 0 chr1 45930153 45930306 -196734047 - MER5A DNA MER1_type -2 187 9 356 256 167 39 chr1 45930462 45930618 -196733735 - L1MC5 LINE L1 -137 7824 7649 2180 102 0 13 chr1 45931789 45932092 -196732261 - AluSg SINE Alu -11 299 1 2217 107 3 0 chr1 45932101 45932410 -196731943 - AluSx SINE Alu -2 310 1 553 242 99 0 chr1 45932484 45932645 -196731708 + MER5B DNA MER1_type 2 178 0 472 245 88 19 chr1 45936557 45936716 -196727637 - MIR SINE MIR -36 226 57 2179 100 0 0 chr1 45936730 45937019 -196727334 - AluSx SINE Alu -23 289 1 261 241 72 0 chr1 45938366 45938449 -196725904 + (CATG)n Simple_repeat Simple_repeat 2 90 0 316 325 117 8 chr1 45938572 45938692 -196725661 - MIR SINE MIR -102 160 28 351 298 20 53 chr1 45941872 45942023 -196722330 + MIR SINE MIR 46 191 -71 362 355 81 5 chr1 45943183 45943394 -196720959 - MIR SINE MIR -16 246 20 250 219 16 0 chr1 45943480 45943544 -196720809 + L2 LINE L2 1642 1706 -1608 698 197 15 0 chr1 45943560 45943692 -196720661 - AluJo SINE Alu -177 135 2 604 195 0 0 chr1 45943714 45943832 -196720521 - AluSp/q SINE Alu -2 311 194 370 299 166 33 chr1 45944411 45944712 -196719641 + MER102b DNA MER1_type 1 341 0 353 264 228 36 chr1 45944890 45945083 -196719270 - MIR SINE MIR -32 230 1 226 224 0 0 chr1 45945407 45945456 -196718897 + MER58 DNA MER1_type 50 98 -117 2189 73 10 0 chr1 45945458 45945746 -196718607 - AluSq SINE Alu -22 291 1 434 215 0 0 chr1 45945819 45945898 -196718455 - FLAM SINE Alu -27 116 38 2861 161 204 8 chr1 45946348 45946975 -196717378 + Tigger2 DNA MER2_type 4 753 -1965 918 179 118 5 chr1 45947005 45947217 -196717136 + Tigger2 DNA MER2_type 2461 2696 -22 207 324 189 0 chr1 45948153 45948227 -196716126 - MIR SINE MIR -63 145 58 887 140 45 6 chr1 45948227 45948384 -196715969 + AluSg/x SINE Alu 129 291 -21 189 107 0 0 chr1 45948396 45948424 -196715929 + (T)n Simple_repeat Simple_repeat 1 28 0 468 158 26 0 chr1 45949537 45949613 -196714740 - AluJo SINE Alu -30 282 205 286 130 22 0 chr1 45949625 45949671 -196714682 - AluJo SINE Alu -159 143 97 1612 120 124 4 chr1 45950022 45950289 -196714064 - AluSg SINE Alu -9 301 3 276 351 155 6 chr1 45950948 45951122 -196713231 + L2 LINE L2 2439 2638 -676 395 200 0 12 chr1 45951125 45951210 -196713143 - L1MC1 LINE L1 -160 6173 6090 418 240 97 11 chr1 45953473 45953612 -196710741 + MIR SINE MIR 10 154 -63 513 282 308 20 chr1 45957087 45957781 -196706572 - L2 LINE L2 -1442 1872 979 586 172 121 9 chr1 45957792 45957908 -196706445 - AluJb SINE Alu -179 133 5 231 337 96 0 chr1 45958254 45958337 -196706016 - L2 LINE L2 -2987 327 237 1188 207 19 8 chr1 45958498 45958759 -196705594 + AluJo SINE Alu 14 277 -35 2054 121 3 0 chr1 45961099 45961389 -196702964 - AluSc SINE Alu -18 291 1 371 260 0 0 chr1 45961855 45961932 -196702421 - Tigger5 DNA MER2_type -2235 88 12 337 210 62 12 chr1 45961949 45962030 -196702323 + Tigger5 DNA MER2_type 2239 2323 0 1442 108 0 9 chr1 45962978 45963191 -196701162 + AluSc SINE Alu 1 211 -98 972 78 0 0 chr1 45963190 45963319 -196701034 + AluSc SINE Alu 161 289 -20 * 348 240 94 0 chr1 45963376 45963472 -196700881 - L2 LINE L2 -1955 1359 1255 338 265 72 0 chr1 45963472 45963555 -196700798 - L2 LINE L2 -2172 1142 1054 768 85 127 0 chr1 45963557 45963675 -196700678 - Tigger3b DNA MER2_type -128 1113 981 280 191 70 2 chr1 45963677 45963786 -196700567 + AluJo SINE Alu 1 141 -161 1921 91 76 0 chr1 45963809 45964084 -196700269 - AluSg SINE Alu -14 296 1 1714 174 110 23 chr1 45964230 45964621 -196699732 - Tigger3b DNA MER2_type -736 495 71 1257 151 121 51 chr1 45964622 45964953 -196699400 - L1MA4A LINE L1 -7 6296 5943 2113 85 7 10 chr1 45964953 45965248 -196699105 - AluSx SINE Alu -7 305 12 1231 191 85 0 chr1 45965259 45965531 -196698822 - AluJo SINE Alu -17 295 1 403 129 71 0 chr1 45965538 45965608 -196698745 + L2 LINE L2 2461 2535 -779 826 181 30 0 chr1 45965638 45965804 -196698549 - FRAM SINE Alu -9 167 1 181 286 18 0 chr1 45965807 45965863 -196698490 + L2 LINE L2 2848 2904 -410 315 0 0 0 chr1 45965908 45965943 -196698410 + (CA)n Simple_repeat Simple_repeat 2 36 0 354 250 192 17 chr1 45965944 45966064 -196698289 + L2 LINE L2 3167 3307 -6 351 289 50 56 chr1 45966372 45966552 -196697801 - MIR SINE MIR -50 212 34 195 100 0 0 chr1 45970026 45970056 -196694297 + (TTG)n Simple_repeat Simple_repeat 1 30 0 215 344 169 16 chr1 45970240 45970423 -196693930 + L2 LINE L2 3033 3243 -29 2261 116 18 60 chr1 45970643 45970825 -196693528 + THE1B LTR MaLR 1 160 -204 5800 45 12 7 chr1 45970825 45971605 -196692748 + SVA Other Other 645 1386 0 2261 116 18 60 chr1 45971605 45971802 -196692551 + THE1B LTR MaLR 160 364 0 210 348 79 11 chr1 45972783 45972872 -196691481 + MIR3 SINE MIR 3 97 -111 551 266 40 68 chr1 45972911 45973159 -196691194 + MIR SINE MIR 21 261 -1 2084 112 0 16 chr1 45973616 45973920 -196690433 + AluSg SINE Alu 1 299 -11 866 169 0 0 chr1 45974494 45974624 -196689729 - FLAM_A SINE Alu 0 133 4 419 257 84 45 chr1 45975991 45976170 -196688183 - MIR SINE MIR -37 225 40 184 200 0 25 chr1 45976618 45976658 -196687695 - MIR SINE MIR -62 200 162 521 259 39 69 chr1 45976727 45976959 -196687394 + MIR SINE MIR 32 256 -6 1959 112 42 0 chr1 45979572 45979857 -196684496 - AluSx SINE Alu -15 297 1 2204 96 3 0 chr1 45979957 45980259 -196684094 - AluSp SINE Alu -10 303 1 180 0 0 0 chr1 45980314 45980334 -196684019 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1880 129 39 0 chr1 45980342 45980622 -196683731 - AluSx SINE Alu -21 291 1 2019 122 0 0 chr1 45980634 45980928 -196683425 - AluSg SINE Alu -16 294 1 2057 108 27 0 chr1 45980949 45981245 -196683108 - AluSx SINE Alu -8 304 1 446 234 47 6 chr1 45981399 45981570 -196682783 + L1ME4a LINE L1 5707 5884 -237 1924 155 0 0 chr1 45981579 45981888 -196682465 + AluJo SINE Alu 1 309 -3 284 247 75 41 chr1 45981934 45982080 -196682273 + L1ME4a LINE L1 5970 6120 -1 920 166 0 18 chr1 45982115 45982278 -196682075 + FRAM SINE Alu 16 175 -1 1726 153 24 0 chr1 45982786 45983073 -196681280 + AluJb SINE Alu 2 295 -17 2308 90 0 3 chr1 45983365 45983676 -196680677 + AluSx SINE Alu 1 310 -2 1690 119 54 0 chr1 45983838 45984115 -196680238 + AluSq SINE Alu 1 292 -21 2062 100 16 23 chr1 45984118 45984428 -196679925 + AluSc SINE Alu 1 308 -1 447 263 53 47 chr1 45984468 45984658 -196679695 + MIR SINE MIR 71 261 -1 289 279 0 0 chr1 45984727 45984795 -196679558 + MIR SINE MIR 78 145 -63 282 304 174 28 chr1 45985092 45985345 -196679008 + L2 LINE L2 2811 3100 -172 391 221 11 53 chr1 45985728 45985823 -196678530 + MIR SINE MIR 136 226 -36 228 135 0 0 chr1 45985838 45985875 -196678478 + (CACCAT)n Simple_repeat Simple_repeat 5 41 0 193 226 16 65 chr1 45987671 45987733 -196676620 - MIR SINE MIR -80 182 124 269 237 21 75 chr1 45987844 45987937 -196676416 - MIR SINE MIR -51 211 124 552 296 69 1 chr1 45988124 45988301 -196676052 + MIR3 SINE MIR 11 205 -3 1842 118 72 0 chr1 45988957 45989236 -196675117 + AluSx SINE Alu 1 299 -13 1818 121 28 7 chr1 45989239 45989529 -196674824 + AluSx SINE Alu 1 296 -16 2054 117 0 3 chr1 45989537 45989828 -196674525 + AluSg SINE Alu 1 290 -20 493 283 99 31 chr1 45989892 45990115 -196674238 + MIR SINE MIR 18 255 -7 2248 101 3 0 chr1 45990399 45990705 -196673648 - AluSp SINE Alu -4 309 3 331 321 25 36 chr1 45990705 45990937 -196673416 + L2 LINE L2 2757 3049 -264 558 168 0 26 chr1 45991224 45991337 -196673016 + MER3 DNA MER1_type 64 126 -83 1317 144 55 140 chr1 45991337 45991671 -196672682 + MER3 DNA MER1_type 2234 2526 -98 1980 122 14 3 chr1 45991671 45991967 -196672386 + AluSx SINE Alu 1 299 -13 1317 144 55 140 chr1 45991967 45992054 -196672299 + MER3 DNA MER1_type 2526 2619 -5 436 311 25 8 chr1 45992060 45992182 -196672171 + L2 LINE L2 3149 3272 0 526 281 51 15 chr1 45992336 45992474 -196671879 - HsTC2 DNA Tc2 -1217 681 533 1946 136 3 0 chr1 45992474 45992768 -196671585 + AluSq SINE Alu 1 295 -18 526 281 51 15 chr1 45992768 45992825 -196671528 - HsTC2 DNA Tc2 -1365 533 479 252 269 26 0 chr1 45992813 45992891 -196671462 - HsTC2 DNA Tc2 -1599 299 220 * 238 279 43 71 chr1 45993309 45993449 -196670904 - L2 LINE L2 -189 3083 2948 1826 98 0 0 chr1 45993790 45994058 -196670295 - AluSq SINE Alu 0 308 41 1637 178 21 3 chr1 45994212 45994498 -196669855 - AluSx SINE Alu -21 291 1 216 0 0 0 chr1 45995738 45995762 -196668591 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 97 0 0 chr1 45995866 45995897 -196668456 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1916 229 79 62 chr1 45996849 45997064 -196667289 - MLT1E LTR MaLR -24 569 359 1861 138 27 0 chr1 45997064 45997362 -196666991 - AluSc SINE Alu -3 306 1 1916 229 79 62 chr1 45997362 45997706 -196666647 - MLT1E LTR MaLR -234 359 1 279 262 65 19 chr1 45997822 45997929 -196666424 + L2 LINE L2 2620 2731 -583 282 294 52 99 chr1 45998210 45998421 -196665932 - L2 LINE L2 -51 3221 3021 507 220 50 14 chr1 45998966 45999071 -196665282 + MER104 DNA Tc2 35 148 -1750 2406 73 0 0 chr1 45999071 45999371 -196664982 + AluY SINE Alu 1 300 -11 507 220 50 14 chr1 45999371 45999406 -196664947 + MER104 DNA Tc2 148 180 0 389 284 147 18 chr1 45999773 45999991 -196664362 - MIR SINE MIR -1 261 16 1337 166 12 20 chr1 46000073 46000320 -196664033 - AluJo SINE Alu -5 307 63 1470 282 175 31 chr1 46000585 46001259 -196663094 + L2 LINE L2 1961 2536 -777 2376 57 0 0 chr1 46001259 46001556 -196662797 + AluY SINE Alu 1 297 -14 1470 282 175 31 chr1 46001556 46002044 -196662309 + L2 LINE L2 2536 3302 -11 2185 118 0 3 chr1 46002044 46002357 -196661996 + AluSx SINE Alu 1 312 0 1470 282 175 31 chr1 46002357 46002371 -196661982 + L2 LINE L2 3302 3313 0 1366 124 79 68 chr1 46002429 46002528 -196661825 - MER33 DNA MER1_type -2272 313 217 1913 148 0 0 chr1 46002528 46002819 -196661534 + AluJo SINE Alu 3 293 -19 1366 124 79 68 chr1 46002819 46003030 -196661323 - MER33 DNA MER1_type -2368 217 1 355 234 370 0 chr1 46003202 46003356 -196660997 - MIR SINE MIR 0 262 52 2104 96 3 20 chr1 46003412 46003714 -196660639 - AluSc SINE Alu -12 297 1 299 327 92 46 chr1 46003856 46004073 -196660280 + MIR SINE MIR 29 255 -7 277 174 141 66 chr1 46004555 46004676 -196659677 - L2 LINE L2 -2 3311 3182 238 322 129 44 chr1 46005690 46006007 -196658346 + L2 LINE L2 2910 3253 -19 187 291 116 47 chr1 46006711 46006797 -196657556 + L2 LINE L2 3178 3269 -3 331 277 148 10 chr1 46006894 46006995 -196657358 + MIR SINE MIR 32 146 -62 312 316 143 0 chr1 46007154 46007287 -196657066 + MIR SINE MIR 1 152 -110 2832 9 0 0 chr1 46007296 46007613 -196656740 + AluYb8 SINE Alu 1 317 -1 377 241 159 21 chr1 46008688 46008833 -196655520 + MIR SINE MIR 20 184 -78 2261 93 0 3 chr1 46008900 46009200 -196655153 - AluSx SINE Alu -13 299 1 338 314 51 0 chr1 46010390 46010508 -196653845 + MIR3 SINE MIR 85 208 0 962 128 0 0 chr1 46010575 46010708 -196653645 - FLAM_C SINE Alu 0 133 1 3356 242 37 12 chr1 46011052 46011694 -196652659 + L1M4 LINE L1 2467 3144 -3002 2130 107 7 0 chr1 46011694 46011992 -196652361 + AluSx SINE Alu 1 300 -12 3356 242 37 12 chr1 46011992 46012342 -196652011 + L1M4 LINE L1 3144 3484 -2662 520 237 17 8 chr1 46012342 46012460 -196651893 - MIR3 SINE MIR -49 159 41 197 176 39 20 chr1 46012464 46012515 -196651838 - MIR3 SINE MIR -2 206 155 274 238 71 32 chr1 46013005 46013131 -196651222 + MIR3 SINE MIR 6 136 -72 263 318 36 9 chr1 46013320 46013430 -196650923 - MIR3 SINE MIR -51 157 45 271 230 40 100 chr1 46014031 46014131 -196650222 - MIR SINE MIR -71 137 44 181 269 0 0 chr1 46014110 46014162 -196650191 + MIR3 SINE MIR 146 197 -11 * 561 223 112 58 chr1 46014648 46014872 -196649481 + L2 LINE L2 3078 3313 0 442 277 159 74 chr1 46014871 46015616 -196648737 - L2 LINE L2 -9 3263 2431 * 446 313 58 39 chr1 46015933 46016141 -196648212 + MIR SINE MIR 8 219 -43 742 150 9 0 chr1 46016564 46016677 -196647676 - FLAM_C SINE Alu -24 119 6 2958 148 67 28 chr1 46017150 46017691 -196646662 - MER68 LTR ERV1 0 562 1 2510 32 0 6 chr1 46018710 46019021 -196645332 - AluY SINE Alu -2 309 1 280 289 171 13 chr1 46019657 46019809 -196644544 + MARNA DNA Mariner 10 185 -401 337 320 39 16 chr1 46020020 46020148 -196644205 - MARNA DNA Mariner -406 180 50 520 221 51 82 chr1 46020590 46020785 -196643568 + MIR SINE MIR 66 254 -8 264 215 56 103 chr1 46020884 46020991 -196643362 - MIR SINE MIR -4 258 157 6075 160 86 25 chr1 46021008 46021074 -196643279 + Charlie1a DNA MER1_type 1 62 -2699 1635 82 142 37 chr1 46021074 46021342 -196643011 - AluY SINE Alu -8 303 8 6075 160 86 25 chr1 46021342 46021587 -196642766 + Charlie1a DNA MER1_type 62 291 -2470 2244 93 0 3 chr1 46021587 46021888 -196642465 - AluSq SINE Alu -13 300 1 6075 160 86 25 chr1 46021888 46022866 -196641487 + Charlie1a DNA MER1_type 291 1370 -85 1922 118 38 3 chr1 46022924 46023211 -196641142 + AluSx SINE Alu 1 297 -15 1608 134 92 18 chr1 46023549 46023833 -196640520 + AluJo SINE Alu 1 305 -7 451 168 44 35 chr1 46023913 46024026 -196640327 + MER112 DNA MER1_type 17 130 -130 220 0 27 54 chr1 46024031 46024068 -196640285 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1951 64 14 46 chr1 46024068 46024169 -196640184 - AluY SINE Alu -37 274 171 3837 89 2 8 chr1 46024169 46024683 -196639670 - MER9 LTR ERVK 0 511 1 1951 64 14 46 chr1 46024683 46024864 -196639489 - AluY SINE Alu -140 171 1 1901 160 47 71 chr1 46025132 46025478 -196638875 + MSTD LTR MaLR 1 354 -42 1581 148 10 28 chr1 46025478 46025769 -196638584 + AluJb SINE Alu 1 286 -26 180 0 0 0 chr1 46025769 46025789 -196638564 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 1901 160 47 71 chr1 46025789 46025847 -196638506 + MSTD LTR MaLR 352 396 0 245 278 40 63 chr1 46025853 46025979 -196638374 - MIR SINE MIR -61 201 79 23 0 0 0 chr1 46027131 46027154 -196637199 + AT_rich Low_complexity Low_complexity 1 23 0 328 39 0 39 chr1 46028127 46028179 -196636174 + (TA)n Simple_repeat Simple_repeat 1 50 0 224 58 13 142 chr1 46028319 46028474 -196635879 + (TA)n Simple_repeat Simple_repeat 2 136 0 305 116 14 82 chr1 46028543 46028689 -196635664 + (TA)n Simple_repeat Simple_repeat 1 136 0 2005 116 0 0 chr1 46028689 46028974 -196635379 - AluSx SINE Alu -27 285 1 248 238 24 32 chr1 46029313 46029439 -196634914 + L1MB7 LINE L1 3122 3246 -2900 780 194 0 0 chr1 46079455 46079589 -196584764 + FRAM SINE Alu 22 155 -21 412 204 0 93 chr1 46079682 46079799 -196584554 + L1ME4a LINE L1 5964 6062 -59 2204 112 10 10 chr1 46079799 46080111 -196584242 - AluSx SINE Alu 0 312 1 412 204 0 93 chr1 46080111 46080165 -196584188 + L1ME4a LINE L1 6062 6119 -2 2285 75 0 4 chr1 46080175 46080477 -196583876 - AluSc SINE Alu 0 301 1 23 0 0 0 chr1 46080944 46080967 -196583386 + AT_rich Low_complexity Low_complexity 1 23 0 2193 89 10 7 chr1 46081361 46081693 -196582660 + AluY SINE Alu 1 311 0 1492 188 32 0 chr1 46081801 46082146 -196582207 + L1MB7 LINE L1 4977 5332 -814 933 158 68 0 chr1 46082147 46082293 -196582060 + FRAM SINE Alu 1 156 -20 3324 181 43 66 chr1 46082294 46082384 -196581969 + L1MB7 LINE L1 5322 5413 -771 837 129 7 0 chr1 46082384 46082515 -196581838 + L1MA7 LINE L1 6146 6286 -5 3324 181 43 66 chr1 46082515 46082905 -196581448 + L1MB7 LINE L1 5413 5810 -374 2836 177 56 9 chr1 46082905 46083441 -196580912 + MER68 LTR ERV1 1 561 -1 3324 181 43 66 chr1 46083441 46083625 -196580728 + L1MB7 LINE L1 5810 5965 -219 639 203 14 51 chr1 46083625 46083763 -196580590 + FLAM_A SINE Alu 1 133 0 3324 181 43 66 chr1 46083763 46083970 -196580383 + L1MB7 LINE L1 5965 6175 -9 384 228 15 52 chr1 46083984 46083996 -196580357 + L1MC5 LINE L1 7783 7794 -167 3105 191 6 50 chr1 46083996 46084649 -196579704 + MLT1E3 LTR MaLR 1 624 0 384 228 15 52 chr1 46084649 46084772 -196579581 + L1MC5 LINE L1 7794 7913 -48 1587 186 44 3 chr1 46084944 46085240 -196579113 - AluJo SINE Alu -4 308 1 514 301 40 0 chr1 46085805 46085953 -196578400 + MIR SINE MIR 31 180 -65 242 281 162 38 chr1 46086538 46086723 -196577630 - L2 LINE L2 -116 3156 2949 654 210 123 0 chr1 46086900 46087038 -196577315 + FRAM SINE Alu 1 153 -23 204 164 0 60 chr1 46087054 46087121 -196577232 + (TATAA)n Simple_repeat Simple_repeat 1 63 0 318 180 0 0 chr1 46087141 46087202 -196577151 + (CTA)n Simple_repeat Simple_repeat 2 62 0 329 184 92 0 chr1 46087202 46087278 -196577075 - MIR SINE MIR -7 255 173 230 163 23 0 chr1 46087278 46087321 -196577032 + 5S rRNA rRNA 1 44 -77 382 338 73 13 chr1 46087321 46087472 -196576881 - MIR SINE MIR -81 181 22 565 221 64 17 chr1 46087765 46087937 -196576416 + L1MB3 LINE L1 2548 2727 -3419 2600 84 15 17 chr1 46087940 46088344 -196576009 + L1MA2 LINE L1 5850 6252 -52 1265 224 61 114 chr1 46089156 46089288 -196575065 + L1MB3 LINE L1 2728 2865 -3281 2281 97 3 0 chr1 46089288 46089578 -196574775 - AluSg SINE Alu -19 291 1 1265 224 61 114 chr1 46089578 46089941 -196574412 + L1MB3 LINE L1 2865 3164 -2982 2229 95 7 3 chr1 46089941 46090235 -196574118 + AluSc SINE Alu 1 295 -14 1265 224 61 114 chr1 46090235 46090563 -196573790 + L1MB3 LINE L1 3164 3508 -2638 1833 133 15 89 chr1 46090565 46090696 -196573657 + AluSx SINE Alu 1 140 -172 7856 16 0 0 chr1 46090696 46092150 -196572203 + L1PA3 LINE L1 4697 6152 -3 1833 133 15 89 chr1 46092150 46092355 -196571998 + AluSx SINE Alu 140 312 0 567 206 26 39 chr1 46092358 46092513 -196571840 + L1MB3 LINE L1 3496 3648 -2498 290 286 88 23 chr1 46092571 46092742 -196571611 + L1MC4a LINE L1 5743 5924 -1884 306 0 0 0 chr1 46092756 46092790 -196571563 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr1 46093082 46093111 -196571242 + AT_rich Low_complexity Low_complexity 1 29 0 306 220 150 30 chr1 46093244 46093344 -196571009 + L1MB3 LINE L1 4702 4813 -1333 3902 134 28 46 chr1 46094378 46095118 -196569235 + L1MB3 LINE L1 5454 6180 -3 336 256 98 5 chr1 46095930 46096086 -196568267 - L1M2 LINE L1 -727 5435 5295 1649 198 19 13 chr1 46096095 46096403 -196567950 - AluJb SINE Alu -2 310 1 2518 70 0 0 chr1 46097042 46097342 -196567011 - AluY SINE Alu -11 300 1 664 219 22 22 chr1 46097383 46097520 -196566833 - FLAM_C SINE Alu -5 138 2 1498 237 46 35 chr1 46097521 46098040 -196566313 - L1M4 LINE L1 -864 5282 4758 8242 100 12 19 chr1 46098068 46099242 -196565111 - L1P LINE L1 -4980 1166 1 1289 186 32 50 chr1 46099253 46099533 -196564820 - L1MB7 LINE L1 -124 6060 5786 1631 174 51 7 chr1 46099533 46099809 -196564544 - AluJo SINE Alu -20 292 5 3658 155 5 53 chr1 46099818 46100457 -196563896 - LTR9 LTR ERV1 0 612 5 1078 144 62 36 chr1 46100461 46100493 -196563860 - HUERS-P3 LTR ERV1 -1 8918 8888 3694 96 22 25 chr1 46100493 46101002 -196563351 - MER9 LTR ERVK -4 507 1 1078 144 62 36 chr1 46101002 46101163 -196563190 - HUERS-P3 LTR ERV1 -31 8888 8720 1033 143 5 10 chr1 46101323 46101531 -196562822 - PABL_A-int LTR ERV1 -2450 2565 2388 23083 137 25 37 chr1 46101531 46103566 -196560787 - PABL_A-int LTR ERV1 -473 6945 4974 2140 128 0 0 chr1 46103566 46103856 -196560497 - AluSq SINE Alu -23 290 1 23083 137 25 37 chr1 46103856 46105737 -196558616 - PABL_A-int LTR ERV1 -2444 4974 3073 2190 181 78 2 chr1 46105737 46106146 -196558207 + LTR8 LTR ERV1 1 440 -251 693 76 11 0 chr1 46106147 46106239 -196558114 - HUERS-P3b LTR ERV1 -4776 2642 2550 375 88 18 0 chr1 46106339 46106396 -196557957 - L1M4 LINE L1 -1129 5017 4960 862 155 179 20 chr1 46106397 46106694 -196557659 - L1MC5 LINE L1 -177 7784 7441 678 199 22 15 chr1 46107216 46107352 -196557001 - L1ME1 LINE L1 -5 6161 6025 25 0 0 0 chr1 46107552 46107577 -196556776 + AT_rich Low_complexity Low_complexity 1 25 0 922 232 158 38 chr1 46107780 46108509 -196555844 + L1ME3A LINE L1 5238 6051 -119 282 73 0 0 chr1 46109005 46109046 -196555307 + (TG)n Simple_repeat Simple_repeat 2 42 0 333 179 51 26 chr1 46109056 46109134 -196555219 + MER116 DNA Mariner 1 80 0 270 236 145 69 chr1 46109155 46109308 -196555045 - L1ME1 LINE L1 -129 5992 5852 2046 119 0 20 chr1 46109308 46109611 -196554742 - AluSg SINE Alu -13 297 1 270 236 145 69 chr1 46109611 46109733 -196554620 - L1ME1 LINE L1 -269 5852 5696 232 236 179 89 chr1 46109775 46109948 -196554405 + MARNA DNA Mariner 281 484 -102 2316 112 0 3 chr1 46109948 46110253 -196554100 - AluSx SINE Alu -8 304 1 232 236 179 89 chr1 46110253 46110325 -196554028 + MARNA DNA Mariner 484 548 -38 1732 156 38 14 chr1 46110421 46110709 -196553644 - AluJo SINE Alu -17 295 1 688 179 15 52 chr1 46110944 46111078 -196553275 + AluJb SINE Alu 127 255 -57 454 241 38 42 chr1 46111105 46111342 -196553011 + L1M4 LINE L1 4233 4468 -1678 1416 220 55 80 chr1 46111425 46111935 -196552418 + LTR53 LTR ERVL 1 497 -22 1439 176 20 52 chr1 46111973 46112159 -196552194 - L1M4 LINE L1 -1198 4948 4777 2165 126 0 0 chr1 46112159 46112453 -196551900 - AluSx SINE Alu -18 294 1 1439 176 20 52 chr1 46112453 46112613 -196551740 - L1M4 LINE L1 -1369 4777 4613 1948 165 0 0 chr1 46112761 46113070 -196551283 - AluJb SINE Alu -3 309 1 389 311 84 21 chr1 46113221 46113411 -196550942 + L2 LINE L2 2556 2757 -557 326 279 106 0 chr1 46113618 46113722 -196550631 + L2 LINE L2 2945 3059 -213 2178 92 0 3 chr1 46114039 46114321 -196550032 + AluSc SINE Alu 21 301 -8 293 263 12 12 chr1 46114349 46114429 -196549924 + L1MEd LINE L1 5 84 -6035 183 42 0 0 chr1 46114639 46114663 -196549690 + (A)n Simple_repeat Simple_repeat 1 24 0 2093 105 4 0 chr1 46114832 46115108 -196549245 - AluSp SINE Alu -6 307 31 2313 149 144 20 chr1 46115236 46115693 -196548660 + MER34 LTR ERV1 27 540 -2 520 295 109 0 chr1 46116711 46116904 -196547449 - MIR SINE MIR -30 232 19 641 337 57 0 chr1 46117112 46117358 -196546995 - MIR SINE MIR -1 261 2 1841 94 4 0 chr1 46119435 46119670 -196544683 - AluSx SINE Alu -17 295 60 250 242 222 39 chr1 46120148 46120301 -196544052 + L1ME4a LINE L1 5830 6010 -111 832 345 118 36 chr1 46120535 46120716 -196543637 + L2 LINE L2 717 882 -2432 4058 145 42 17 chr1 46120716 46121435 -196542918 - L1MB4 LINE L1 0 6180 5444 832 345 118 36 chr1 46121435 46122354 -196541999 + L2 LINE L2 882 1907 -1407 1326 169 8 21 chr1 46122367 46122604 -196541749 - AluJo SINE Alu -78 234 1 213 333 39 39 chr1 46122648 46122828 -196541525 + L2 LINE L2 1982 2161 -1153 490 335 28 6 chr1 46122830 46123012 -196541341 + MIR SINE MIR 7 192 -70 1667 267 79 15 chr1 46123097 46123577 -196540776 + MLT1J LTR MaLR 1 511 0 490 338 115 25 chr1 46124130 46124574 -196539779 + L2 LINE L2 2369 2852 -462 2335 92 0 0 chr1 46124849 46125153 -196539200 + AluSx SINE Alu 1 304 -8 929 194 97 0 chr1 46125822 46126008 -196538345 - MER20 DNA MER1_type 0 219 16 2136 102 3 3 chr1 46126036 46126359 -196537994 + AluSp SINE Alu 1 323 0 1325 139 5 10 chr1 46126378 46126587 -196537766 - AluJb SINE Alu -18 294 87 210 307 47 60 chr1 46128764 46128914 -196535439 + MIR3 SINE MIR 24 171 -37 250 286 107 29 chr1 46129252 46129392 -196534961 + L2 LINE L2 2920 3070 -243 2281 75 7 0 chr1 46129856 46130150 -196534203 + AluY SINE Alu 1 296 -15 1182 206 0 0 chr1 46130151 46130355 -196533998 + AluJo SINE Alu 87 290 -22 441 275 158 36 chr1 46130809 46131031 -196533322 - MIR SINE MIR 0 262 14 249 271 14 14 chr1 46131366 46131436 -196532917 + L2 LINE L2 3230 3299 -14 2011 135 14 3 chr1 46132248 46132544 -196531809 + AluJb SINE Alu 8 306 -6 414 225 176 22 chr1 46133067 46133249 -196531104 + L2 LINE L2 3088 3297 -16 587 255 63 74 chr1 46133665 46133709 -196530644 + L2 LINE L2 2952 2995 -277 2445 57 0 25 chr1 46133709 46134027 -196530326 - AluSq SINE Alu -1 312 3 587 255 63 74 chr1 46134027 46134253 -196530100 + L2 LINE L2 2995 3219 -53 324 350 42 14 chr1 46135983 46136126 -196528227 - L2 LINE L2 -3 3269 3123 2222 58 0 4 chr1 46136126 46136402 -196527951 + AluSq SINE Alu 1 275 -38 484 214 144 79 chr1 46136606 46136821 -196527532 - MER112 DNA MER1_type -5 255 27 1416 77 0 0 chr1 46136825 46136995 -196527358 + AluSp SINE Alu 130 299 -14 216 270 180 43 chr1 46137016 46137227 -196527126 - L2 LINE L2 -462 2852 2613 * 331 312 27 97 chr1 46137209 46137395 -196526958 + L2 LINE L2 3037 3209 -63 * 433 342 65 13 chr1 46137392 46137675 -196526678 + L2 LINE L2 2740 3046 -226 216 299 58 23 chr1 46137753 46137840 -196526513 + L2 LINE L2 3178 3267 -5 181 231 77 46 chr1 46138258 46138323 -196526030 + L2 LINE L2 3179 3245 -27 527 176 136 34 chr1 46138721 46138897 -196525456 - L1ME4a LINE L1 0 6121 5928 2214 84 0 7 chr1 46138974 46139258 -196525095 - AluSg SINE Alu -7 303 22 801 145 32 0 chr1 46140105 46140229 -196524124 + MER58B DNA MER1_type 213 340 -1 238 143 20 0 chr1 46140233 46140282 -196524071 - L1ME4a LINE L1 -215 5955 5906 2109 192 36 133 chr1 46140339 46141387 -196522966 + L1M4 LINE L1 2452 3373 -2773 203 205 0 0 chr1 46141862 46141901 -196522452 + L2 LINE L2 3189 3227 -86 2236 146 20 55 chr1 46141964 46142368 -196521985 - MLT1B LTR MaLR 0 390 1 208 359 194 0 chr1 46142784 46142887 -196521466 - L2 LINE L2 0 3272 3150 244 220 17 17 chr1 46143398 46143457 -196520896 - MLT1K LTR MaLR -16 572 514 231 235 44 15 chr1 46144015 46144083 -196520270 - L1MC4 LINE L1 -140 7902 7833 244 137 78 20 chr1 46144098 46144149 -196520204 + L1MC4 LINE L1 7782 7835 -207 1791 227 116 31 chr1 46144157 46145034 -196519319 - L1MC4 LINE L1 -290 7752 6629 2101 117 21 0 chr1 46145034 46145324 -196519029 - AluSx SINE Alu -16 296 1 1791 227 116 31 chr1 46145324 46145454 -196518899 - L1MC4 LINE L1 -1413 6629 6511 211 283 168 9 chr1 46145714 46145827 -196518526 + MIR3 SINE MIR 5 135 -73 * 348 282 118 87 chr1 46145802 46146249 -196518104 + L2 LINE L2 2576 3079 -193 1894 143 0 0 chr1 46146249 46146522 -196517831 - AluSx SINE Alu -13 299 27 2171 68 0 14 chr1 46146622 46146901 -196517452 + AluY SINE Alu 30 304 -7 350 293 39 44 chr1 46146908 46147089 -196517264 + L2 LINE L2 3119 3298 -15 226 292 10 42 chr1 46147356 46147452 -196516901 + MIR SINE MIR 31 123 -85 * 356 325 35 9 chr1 46147422 46147536 -196516817 + L2 LINE L2 2908 3024 -248 1392 174 13 13 chr1 46147538 46147774 -196516579 + AluJo SINE Alu 1 236 -76 190 259 70 42 chr1 46147817 46147960 -196516393 + L2 LINE L2 3167 3313 0 184 318 82 24 chr1 46147996 46148081 -196516272 + MIR SINE MIR 160 249 -13 280 339 77 21 chr1 46149427 46149660 -196514693 + L2 LINE L2 2644 2889 -425 22 0 0 0 chr1 46149725 46149747 -196514606 + AT_rich Low_complexity Low_complexity 1 22 0 2670 14 0 0 chr1 46149781 46150091 -196514262 + AluYa5 SINE Alu 1 310 0 1215 155 0 0 chr1 46150148 46150341 -196514012 - MER2 DNA MER2_type -135 210 18 358 331 16 0 chr1 46150356 46150483 -196513870 + L2 LINE L2 2896 3024 -248 829 149 0 85 chr1 46150681 46150733 -196513620 - L1MB7 LINE L1 -19 6165 6110 2078 134 13 0 chr1 46150733 46151038 -196513315 + AluSx SINE Alu 1 309 -3 829 149 0 85 chr1 46151038 46151173 -196513180 - L1MB7 LINE L1 -74 6110 5994 1698 145 3 86 chr1 46151211 46151562 -196512791 - L1MB7 LINE L1 -189 5995 5674 370 294 73 59 chr1 46152106 46152137 -196512216 + MIR SINE MIR 6 35 -227 2343 79 3 3 chr1 46152137 46152429 -196511924 + AluSc SINE Alu 1 292 -17 370 294 73 59 chr1 46152429 46152601 -196511752 + MIR SINE MIR 35 212 -50 1524 229 30 76 chr1 46152996 46153497 -196510856 + LTR33 LTR ERVL 44 521 0 2189 98 3 36 chr1 46153592 46153725 -196510628 + AluSg SINE Alu 1 137 -173 2220 94 21 0 chr1 46153725 46154013 -196510340 + AluSx SINE Alu 1 294 -18 2189 98 3 36 chr1 46154013 46154184 -196510169 + AluSg SINE Alu 137 295 -15 351 0 0 0 chr1 46154221 46154260 -196510093 + (CA)n Simple_repeat Simple_repeat 2 40 0 3803 176 112 4 chr1 46154261 46155120 -196509233 - L1MB7 LINE L1 -13 6171 5227 236 192 19 0 chr1 46155370 46155422 -196508931 - MIR SINE MIR -75 133 81 418 236 68 27 chr1 46155877 46156025 -196508328 + MIR SINE MIR 31 184 -78 3574 124 4 28 chr1 46156739 46157279 -196507074 - MER1A DNA MER1_type 0 527 1 628 261 17 6 chr1 46158943 46159123 -196505230 - MIR SINE MIR -13 249 68 465 303 97 22 chr1 46159157 46159339 -196505014 - L2 LINE L2 -2 3311 3101 1869 161 3 19 chr1 46159339 46159656 -196504697 + AluJo SINE Alu 1 312 0 465 303 97 22 chr1 46159656 46159740 -196504613 - L2 LINE L2 -212 3101 3025 185 217 22 0 chr1 46159783 46159829 -196504524 - L2 LINE L2 -1 3271 3225 638 256 100 62 chr1 46160098 46160419 -196503934 + L2 LINE L2 2980 3312 -1 475 240 126 14 chr1 46161337 46161609 -196502744 + L1M4c LINE L1 2070 2388 -4024 261 255 128 43 chr1 46161782 46161908 -196502445 + MIR SINE MIR 9 143 -114 2469 73 0 13 chr1 46162695 46163009 -196501344 - AluY SINE Alu -1 310 1 231 230 0 14 chr1 46163014 46163088 -196501265 - L1M4 LINE L1 -5408 1134 1062 * 768 243 114 41 chr1 46163085 46163565 -196500788 - L1MEc LINE L1 -3092 3123 2680 350 73 0 18 chr1 46163565 46163620 -196500733 + (TA)n Simple_repeat Simple_repeat 2 55 0 2236 94 35 0 chr1 46163620 46163907 -196500446 - AluSg SINE Alu -13 297 1 768 243 114 41 chr1 46163907 46164090 -196500263 - L1MEc LINE L1 -3534 2681 2382 338 300 23 31 chr1 46164159 46164289 -196500064 + MLT2E LTR ERVL 32 160 -468 413 246 0 59 chr1 46164352 46164470 -196499883 + LTR33A LTR ERVL 412 522 -1 340 194 30 0 chr1 46164529 46164596 -196499757 - FLAM_A SINE Alu -15 118 50 270 259 77 24 chr1 46164761 46164931 -196499422 - L1MEc LINE L1 -4159 2237 2059 2530 62 0 10 chr1 46165352 46165657 -196498696 + AluY SINE Alu 1 302 -9 522 277 67 46 chr1 46166762 46166921 -196497432 - L2 LINE L2 -904 2410 2256 2113 123 0 7 chr1 46166921 46167240 -196497113 + AluSx SINE Alu 1 312 0 522 277 67 46 chr1 46167240 46167408 -196496945 - L2 LINE L2 -1058 2256 2076 1358 205 123 16 chr1 46167408 46167783 -196496570 - L1MC4 LINE L1 -9 8033 7619 2134 177 55 12 chr1 46169709 46170127 -196494226 + MER63B DNA MER1_type 1 436 0 190 271 104 21 chr1 46170925 46171021 -196493332 - MIR SINE MIR -123 139 36 2121 87 76 0 chr1 46173851 46174128 -196490225 - AluY SINE Alu -13 298 1 845 285 120 71 chr1 46175107 46175599 -196488754 - MARNA DNA Mariner -62 524 9 444 217 114 36 chr1 46177449 46177615 -196486738 + L1ME LINE L1 5548 5726 -395 182 220 0 60 chr1 46177622 46177672 -196486681 + L2 LINE L2 3266 3312 -1 923 141 31 31 chr1 46177747 46177910 -196486443 + AluJo SINE Alu 1 163 -149 1788 172 0 23 chr1 46177967 46178270 -196486083 - AluJo SINE Alu -16 296 1 182 271 17 17 chr1 46179029 46179088 -196485265 + L2 LINE L2 3248 3306 -7 2412 92 20 0 chr1 46180086 46180391 -196483962 - AluSx SINE Alu -1 311 1 2105 125 3 7 chr1 46180596 46180901 -196483452 + AluSp SINE Alu 1 304 -9 1953 165 25 31 chr1 46181575 46182111 -196482242 + L1MB7 LINE L1 4730 5268 -916 1815 152 50 0 chr1 46182111 46182394 -196481959 + AluJb SINE Alu 1 297 -15 1953 165 25 31 chr1 46182394 46182610 -196481743 + L1MB7 LINE L1 5268 5484 -700 183 42 0 0 chr1 46182610 46182634 -196481719 + (CATA)n Simple_repeat Simple_repeat 1 24 0 1953 165 25 31 chr1 46182634 46183097 -196481256 + L1MB7 LINE L1 5484 6161 -23 484 199 76 15 chr1 46183127 46183258 -196481095 + L2 LINE L2 3161 3299 -14 363 117 0 0 chr1 46183647 46183707 -196480646 - Alu SINE Alu 0 302 243 281 331 39 28 chr1 46184098 46184279 -196480074 - L2 LINE L2 -213 3059 2877 183 257 99 112 chr1 46184399 46184551 -196479802 - L2 LINE L2 -569 2745 2596 2105 199 196 54 chr1 46185087 46185659 -196478694 + MLT1E1 LTR MaLR 1 653 -1 1852 170 31 102 chr1 46186293 46186425 -196477928 - MLT1D LTR MaLR -1 504 364 2012 153 0 3 chr1 46186425 46186726 -196477627 + AluJb SINE Alu 1 300 -12 1852 170 31 102 chr1 46186726 46187135 -196477218 - MLT1D LTR MaLR -141 364 1 259 336 128 36 chr1 46187407 46187845 -196476508 + L2 LINE L2 1597 2074 -1240 534 202 40 0 chr1 46187854 46187953 -196476400 - FRAM SINE Alu -15 161 59 2067 116 42 36 chr1 46187997 46188332 -196476021 + MER1B DNA MER1_type 1 337 0 279 91 109 0 chr1 46188365 46188420 -196475933 - L1MB3 LINE L1 -11 6172 6112 932 288 74 50 chr1 46188421 46189015 -196475338 + L2 LINE L2 2148 2755 -559 412 313 71 73 chr1 46189136 46189504 -196474849 + L2 LINE L2 2904 3270 -2 1914 164 7 0 chr1 46190326 46190625 -196473728 - AluJb SINE Alu -5 307 7 563 200 196 22 chr1 46190661 46190886 -196473467 + L1ME4a LINE L1 5854 6117 -4 324 275 50 8 chr1 46191005 46191125 -196473228 + L3 LINE CR1 1195 1319 -258 457 200 57 9 chr1 46191129 46191234 -196473119 + L2 LINE L2 3204 3313 0 1696 193 7 7 chr1 46191579 46191875 -196472478 - AluJo SINE Alu -14 298 3 2391 72 26 10 chr1 46193053 46193359 -196470994 - AluSq SINE Alu -1 312 2 393 188 0 0 chr1 46244383 46244463 -196419890 + (TA)n Simple_repeat Simple_repeat 2 81 0 485 333 82 51 chr1 46244922 46245336 -196419017 - MLT1K LTR MaLR 0 588 162 318 377 58 19 chr1 46245727 46245881 -196418472 + MER91A DNA MER1_type 15 174 -22 450 0 0 0 chr1 46246101 46246151 -196418202 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 2010 123 7 7 chr1 46246156 46246432 -196417921 - AluSx SINE Alu -36 276 1 243 241 107 45 chr1 46246551 46246578 -196417775 + MIR3 SINE MIR 85 109 -99 2212 113 10 0 chr1 46246578 46246888 -196417465 + AluSq SINE Alu 1 313 0 243 241 107 45 chr1 46246888 46246972 -196417381 + MIR3 SINE MIR 109 203 -5 552 180 0 36 chr1 46247401 46247512 -196416841 + FLAM_A SINE Alu 25 131 -11 1142 122 0 50 chr1 46247859 46248039 -196416314 + AluJo SINE Alu 1 171 -141 979 143 22 16 chr1 46248039 46248221 -196416132 - L1MC3 LINE L1 -604 7181 6999 1098 138 17 145 chr1 46248318 46248608 -196415745 - L1MD3 LINE L1 -966 7029 6777 1951 144 3 3 chr1 46248665 46248957 -196415396 + AluSx SINE Alu 1 292 -20 2425 175 54 42 chr1 46249068 46249400 -196414953 - MLT1D LTR MaLR -2 503 162 2498 121 132 5 chr1 46249400 46249780 -196414573 - MSTA LTR MaLR 0 428 1 2425 175 54 42 chr1 46249780 46249944 -196414409 - MLT1D LTR MaLR -343 162 1 190 308 125 58 chr1 46250885 46250989 -196413364 + MIR SINE MIR 20 130 -132 213 94 0 0 chr1 46250999 46251031 -196413322 + (TC)n Simple_repeat Simple_repeat 1 32 0 1821 162 7 0 chr1 46251031 46251321 -196413032 - AluJo SINE Alu -1 311 20 788 251 121 55 chr1 46251393 46251739 -196412614 - MLT1J LTR MaLR -35 476 108 387 0 0 0 chr1 46251952 46251995 -196412358 + (TC)n Simple_repeat Simple_repeat 2 44 0 1733 144 43 7 chr1 46251995 46252272 -196412081 - AluJb SINE Alu -25 287 1 2190 125 0 13 chr1 46252970 46253273 -196411080 - AluSx SINE Alu -13 299 1 307 340 0 7 chr1 46253478 46253622 -196410731 + L1M4 LINE L1 3681 3823 -2323 231 88 0 0 chr1 46255067 46255101 -196409252 + (T)n Simple_repeat Simple_repeat 1 34 0 430 290 97 27 chr1 46255192 46255378 -196408975 - MER34 LTR ERV1 -29 513 315 262 328 24 24 chr1 46255554 46255679 -196408674 - MER34 LTR ERV1 -280 262 138 2019 119 4 0 chr1 46255761 46256050 -196408303 + AluSq SINE Alu 13 302 0 1974 148 3 0 chr1 46256086 46256384 -196407969 - AluJo SINE Alu -8 304 6 334 273 0 0 chr1 46256387 46256464 -196407889 - MER34 LTR ERV1 -465 77 1 2442 78 0 0 chr1 46256798 46257091 -196407262 - AluSc SINE Alu -16 293 1 1318 263 66 43 chr1 46257094 46257535 -196406818 - L1ME3A LINE L1 -230 5940 5511 2418 59 3 7 chr1 46257535 46257842 -196406511 - AluY SINE Alu -5 306 1 1318 263 66 43 chr1 46257842 46258068 -196406285 - L1ME3A LINE L1 -659 5511 5292 2085 100 4 4 chr1 46258068 46258389 -196405964 + AluSg SINE Alu 2 322 0 1318 263 66 43 chr1 46258389 46258698 -196405655 - L1ME3A LINE L1 -878 5292 4942 719 278 71 77 chr1 46259355 46259525 -196404828 - L1ME3A LINE L1 -1232 4914 4744 2279 114 0 0 chr1 46259525 46259831 -196404522 + AluSx SINE Alu 1 306 -6 719 278 71 77 chr1 46259831 46260232 -196404121 - L1ME3A LINE L1 -1402 4744 4345 1028 200 0 6 chr1 46260232 46260407 -196403946 + FAM SINE Alu 1 174 -1 719 278 71 77 chr1 46260407 46260497 -196403856 - L1ME3A LINE L1 -1801 4345 4256 2413 74 0 3 chr1 46260506 46260803 -196403550 + AluSx SINE Alu 4 299 -13 509 247 47 18 chr1 46260879 46261049 -196403304 - L1ME3A LINE L1 -2166 3980 3806 216 321 0 48 chr1 46261380 46261464 -196402889 - L2 LINE L2 -8 3305 3226 2293 167 38 44 chr1 46261847 46262327 -196402026 + MLT1D LTR MaLR 29 505 0 369 355 75 25 chr1 46262352 46262559 -196401794 - L2 LINE L2 -927 2387 2192 1311 153 64 71 chr1 46262559 46262885 -196401468 - MER33 DNA MER1_type 0 324 1 369 355 75 25 chr1 46262885 46262980 -196401373 - L2 LINE L2 -1122 2192 2103 2062 103 4 0 chr1 46262980 46263253 -196401100 + AluSx SINE Alu 1 274 -38 527 42 0 14 chr1 46263258 46263329 -196401024 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 369 355 75 25 chr1 46263329 46263380 -196400973 - L2 LINE L2 -1214 2100 2009 365 270 93 75 chr1 46264124 46264350 -196400003 + MIR SINE MIR 31 260 -2 1329 235 37 68 chr1 46264644 46264709 -196399644 + L1MC5 LINE L1 7301 7366 -595 2065 137 0 3 chr1 46264709 46265022 -196399331 + AluSx SINE Alu 1 312 0 1329 235 37 68 chr1 46265022 46265501 -196398852 + L1MC5 LINE L1 7366 7828 -133 2100 91 0 0 chr1 46265501 46265764 -196398589 + AluSx SINE Alu 47 309 -3 2142 118 0 3 chr1 46266071 46266377 -196397976 - AluY SINE Alu -6 305 1 439 274 30 91 chr1 46266424 46266687 -196397666 - LTR16A LTR ERVL 0 450 204 546 159 0 53 chr1 46266799 46266912 -196397441 + AluSg/x SINE Alu 205 311 -1 928 203 22 87 chr1 46266982 46267085 -196397268 - MIR SINE MIR -3 259 151 1947 186 87 23 chr1 46267085 46267478 -196396875 - MER47B DNA MER2_type 0 418 1 928 203 22 87 chr1 46267478 46267607 -196396746 - MIR SINE MIR -111 151 45 2242 85 0 55 chr1 46267607 46267914 -196396439 - AluSq SINE Alu -17 296 7 928 203 22 87 chr1 46267914 46267956 -196396397 - MIR SINE MIR -217 45 2 308 292 0 0 chr1 46267980 46268052 -196396301 + L2 LINE L2 3242 3313 0 198 314 81 0 chr1 46268577 46268663 -196395690 + L3b LINE CR1 1290 1382 -201 193 209 154 38 chr1 46268712 46268792 -196395561 + MIR3 SINE MIR 115 180 -28 1807 134 58 0 chr1 46268897 46269173 -196395180 - AluJb SINE Alu -20 292 1 870 211 0 6 chr1 46269470 46269626 -196394727 - AluJo/FRAM SINE Alu -10 292 138 662 92 11 0 chr1 46269626 46269713 -196394640 - AluJ/FLAM SINE Alu -223 89 2 22 0 0 0 chr1 46269966 46269988 -196394365 + AT_rich Low_complexity Low_complexity 1 22 0 853 196 0 14 chr1 46270206 46270349 -196394004 + FLAM_C SINE Alu 2 142 -1 216 0 0 0 chr1 46270479 46270503 -196393850 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 596 161 0 131 chr1 46270505 46270555 -196393798 - FLAM_C SINE Alu -192 120 65 2322 105 0 0 chr1 46270555 46270849 -196393504 - AluSx SINE Alu -17 295 2 596 161 0 131 chr1 46270849 46270935 -196393418 - FLAM_C SINE Alu -247 65 2 1243 257 88 8 chr1 46271088 46271450 -196392903 - MLT1I LTR MaLR 0 409 19 189 294 283 22 chr1 46271600 46271784 -196392569 + MIR SINE MIR 28 259 -3 318 303 68 114 chr1 46272597 46272964 -196391389 + L2 LINE L2 2916 3265 -7 316 365 36 7 chr1 46273684 46273821 -196390532 - MIR SINE MIR -101 161 21 916 141 0 0 chr1 46273878 46274020 -196390333 - FLAM_C SINE Alu -1 142 1 249 108 0 0 chr1 46274027 46274064 -196390289 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 525 209 81 47 chr1 46274095 46274267 -196390086 - L1MA9 LINE L1 -42 6270 6093 345 150 0 50 chr1 46274485 46274545 -196389808 + FLAM SINE Alu 72 122 -11 1411 170 49 0 chr1 46274597 46274862 -196389491 - AluJo SINE Alu -6 306 29 774 160 0 38 chr1 46274885 46275016 -196389337 - FLAM_A SINE Alu -7 126 1 1355 248 101 33 chr1 46275042 46275495 -196388858 + L2 LINE L2 2567 3081 -232 2162 84 25 7 chr1 46275495 46275781 -196388572 + AluSx SINE Alu 1 291 -21 1355 248 101 33 chr1 46275781 46276031 -196388322 + L2 LINE L2 3081 3313 0 228 238 95 16 chr1 46276087 46276150 -196388203 + L2 LINE L2 3201 3268 -4 23 54 0 0 chr1 46277363 46277400 -196386953 + GC_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr1 46279215 46279251 -196385102 + AT_rich Low_complexity Low_complexity 1 36 0 293 185 136 12 chr1 46279941 46280022 -196384331 - MIR SINE MIR 0 262 172 184 83 0 0 chr1 46280040 46280064 -196384289 + MIR SINE MIR 87 110 -152 1945 147 88 43 chr1 46280580 46281023 -196383330 - L1MB8 LINE L1 0 6178 5716 2058 115 0 3 chr1 46281031 46281317 -196383036 - AluSx SINE Alu -27 285 1 255 234 0 0 chr1 46281408 46281455 -196382898 - L2 LINE L2 -40 3232 3186 255 316 202 6 chr1 46281504 46281672 -196382681 - MIR SINE MIR -60 202 2 2072 140 7 0 chr1 46281752 46282060 -196382293 - AluJb SINE Alu -2 310 1 298 218 92 0 chr1 46282201 46282288 -196382065 - MIR SINE MIR 0 262 168 22 0 0 0 chr1 46282288 46282310 -196382043 + AT_rich Low_complexity Low_complexity 1 22 0 590 206 44 15 chr1 46282378 46282514 -196381839 - MIR SINE MIR -122 140 1 1879 152 45 0 chr1 46283449 46283739 -196380614 + AluSx SINE Alu 1 303 -9 1512 186 17 17 chr1 46284106 46284401 -196379952 - AluJo SINE Alu -17 295 1 23 33 0 0 chr1 46284940 46284970 -196379383 + AT_rich Low_complexity Low_complexity 1 30 0 200 321 102 28 chr1 46285410 46285517 -196378836 - MIR SINE MIR -72 136 35 2066 104 36 0 chr1 46286157 46286437 -196377916 - AluSx SINE Alu -22 290 1 222 301 129 21 chr1 46286884 46286977 -196377376 - L2 LINE L2 -33 3239 3137 195 338 84 0 chr1 46287263 46287334 -196377019 + L2 LINE L2 3169 3245 -27 3707 128 73 5 chr1 46287351 46287915 -196376438 + MER7C DNA MER2_type 1 602 0 488 100 18 67 chr1 46288005 46288345 -196376008 + (TA)n Simple_repeat Simple_repeat 1 323 0 342 302 50 29 chr1 46288489 46288628 -196375725 - L3 LINE CR1 -210 1367 1226 269 323 32 32 chr1 46288604 46288697 -196375656 - L2 LINE L2 -6 3266 3174 * 435 207 0 0 chr1 46288936 46289018 -196375335 + L2 LINE L2 3232 3313 0 227 221 135 10 chr1 46289020 46289124 -196375229 - MER103 DNA DNA -6 160 44 617 214 28 195 chr1 46289222 46289581 -196374772 - L3 LINE CR1 -348 1229 931 541 291 60 21 chr1 46289824 46290180 -196374173 - L1MC5 LINE L1 -46 7996 7505 296 234 0 0 chr1 46291039 46291103 -196373250 - MER117 DNA MER1_type -118 79 16 229 273 141 30 chr1 46291115 46291214 -196373139 + MER5B DNA MER1_type 1 110 -68 4296 169 47 46 chr1 46292664 46293111 -196371242 - L1MB8 LINE L1 0 6178 5733 225 0 0 0 chr1 46293111 46293136 -196371217 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1669 171 7 0 chr1 46293136 46293410 -196370943 - AluJo SINE Alu -36 276 1 4296 169 47 46 chr1 46293410 46293714 -196370639 - L1MB8 LINE L1 -445 5733 5422 2254 107 0 10 chr1 46293714 46294012 -196370341 + AluSq SINE Alu 1 295 -18 4296 169 47 46 chr1 46294012 46294179 -196370174 - L1MB8 LINE L1 -756 5422 5257 280 194 468 0 chr1 46294328 46294452 -196369901 - L2 LINE L2 0 3313 3132 189 0 0 0 chr1 46294823 46294844 -196369509 + (T)n Simple_repeat Simple_repeat 1 21 0 33 25 0 0 chr1 46295287 46295327 -196369026 + AT_rich Low_complexity Low_complexity 1 40 0 2225 53 15 0 chr1 46295327 46295591 -196368762 - L1PB1 LINE L1 0 6151 5884 330 271 114 29 chr1 46295663 46295803 -196368550 - MIR SINE MIR -82 180 29 1641 196 0 14 chr1 46295888 46296184 -196368169 + AluJo SINE Alu 1 292 -20 2914 145 43 76 chr1 46296987 46297608 -196366745 - L1MB7 LINE L1 -2 6182 5582 1946 117 13 20 chr1 46297807 46298105 -196366248 + AluSq SINE Alu 1 296 -17 304 283 165 61 chr1 46298278 46298508 -196365845 - L2 LINE L2 -879 2435 2182 643 316 62 18 chr1 46298736 46299006 -196365347 - L1MEd LINE L1 -5310 809 520 2397 90 0 7 chr1 46299006 46299306 -196365047 - AluSq SINE Alu -15 298 1 643 316 62 18 chr1 46299306 46299374 -196364979 - L1MEd LINE L1 -5599 520 456 558 253 39 69 chr1 46299961 46300001 -196364352 + Charlie8 DNA MER1_type 40 80 -250 801 153 0 0 chr1 46300001 46300119 -196364234 + FLAM_C SINE Alu 1 118 -15 558 253 39 69 chr1 46300119 46300311 -196364042 + Charlie8 DNA MER1_type 80 265 -65 373 275 28 123 chr1 46300415 46300666 -196363687 - MIR SINE MIR -16 246 20 252 0 0 0 chr1 46300680 46300708 -196363645 + (CTA)n Simple_repeat Simple_repeat 2 29 0 2356 98 0 7 chr1 46301609 46301915 -196362438 + AluSx SINE Alu 1 304 -8 2256 99 7 3 chr1 46301917 46302209 -196362144 + AluSc SINE Alu 3 295 -14 1212 248 67 42 chr1 46302668 46303100 -196361253 - L2 LINE L2 -2 3311 2869 1621 232 175 22 chr1 46304765 46305451 -196358902 - LTR50 LTR ERVL -2 793 3 2421 81 7 3 chr1 46305757 46306066 -196358287 + AluSg SINE Alu 1 310 0 6086 132 48 10 chr1 46306353 46308451 -196355902 - L1MA3 LINE L1 0 6305 4125 789 242 102 5 chr1 46308986 46309201 -196355152 - MIR SINE MIR -25 237 2 10738 209 57 46 chr1 46309693 46310856 -196353497 + L1PB4 LINE L1 1117 2266 -4593 1953 142 0 22 chr1 46310856 46311167 -196353186 + AluSx SINE Alu 1 304 -8 10738 209 57 46 chr1 46311167 46311571 -196352782 + L1PB4 LINE L1 2266 2664 -4195 1818 163 7 10 chr1 46311571 46311865 -196352488 - AluJo SINE Alu -19 293 1 10738 209 57 46 chr1 46311865 46312150 -196352203 + L1PB4 LINE L1 2664 2944 -3915 2001 132 7 0 chr1 46312150 46312437 -196351916 - AluSg SINE Alu -21 289 1 1894 161 3 3 chr1 46312447 46312733 -196351620 - AluSx SINE Alu -26 286 1 10738 209 57 46 chr1 46312733 46314045 -196350308 + L1PB4 LINE L1 2952 4248 -2611 2379 113 39 3 chr1 46314045 46314407 -196349946 - THE1C LTR MaLR 0 375 1 10738 209 57 46 chr1 46314407 46316532 -196347821 + L1PB4 LINE L1 4248 6407 -452 2065 134 7 0 chr1 46316532 46316839 -196347514 + AluSx SINE Alu 1 309 -3 10738 209 57 46 chr1 46316839 46317283 -196347070 + L1PB4 LINE L1 6407 6845 -14 2263 99 0 10 chr1 46317580 46317882 -196346471 - AluSq SINE Alu -14 299 1 742 172 99 7 chr1 46318840 46319066 -196345287 - L1ME LINE L1 -675 5495 5254 1916 160 3 3 chr1 46319240 46319540 -196344813 - AluJb SINE Alu -12 300 1 338 211 211 16 chr1 46319552 46319590 -196344763 - L1MA10 LINE L1 -1 6333 6296 1266 204 127 15 chr1 46319590 46320259 -196344094 - L1ME1 LINE L1 -52 6114 5349 372 226 47 0 chr1 46320444 46320550 -196343803 - L1ME1 LINE L1 -980 5364 5254 1245 187 91 0 chr1 46320585 46320826 -196343527 - AluJo SINE Alu -36 276 14 1665 217 85 8 chr1 46320852 46321251 -196343102 - L1ME1 LINE L1 -888 5258 4810 654 49 0 0 chr1 46321251 46321333 -196343020 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 1665 217 85 8 chr1 46321333 46321440 -196342913 - L1ME1 LINE L1 -1336 4810 4713 425 267 236 51 chr1 46322902 46323097 -196341256 - MIR SINE MIR -12 250 20 224 258 21 10 chr1 46323102 46323199 -196341154 + (TA)n Simple_repeat Simple_repeat 1 98 0 1582 146 83 117 chr1 46323249 46323744 -196340609 - Charlie1b DNA MER1_type -45 478 1 1940 151 0 16 chr1 46324375 46324680 -196339673 - AluJb SINE Alu -12 300 1 334 343 79 32 chr1 46324755 46325005 -196339348 + L3b LINE CR1 1109 1381 -202 2233 101 0 7 chr1 46325005 46325301 -196339052 - AluSg SINE Alu -16 294 1 334 343 79 32 chr1 46325301 46325391 -196338962 + L3b LINE CR1 1381 1465 -118 2337 81 3 3 chr1 46325425 46325722 -196338631 + AluSx SINE Alu 1 297 -15 1208 210 21 0 chr1 46325777 46326010 -196338343 - MIR SINE MIR -19 243 6 1507 192 58 32 chr1 46326993 46327076 -196337277 - Charlie4a DNA MER1_type -1469 492 413 1309 83 6 0 chr1 46327076 46327256 -196337097 + L1PA11 LINE L1 5993 6173 -1 1507 192 58 32 chr1 46327256 46327605 -196336748 - Charlie4a DNA MER1_type -1548 413 49 425 211 34 132 chr1 46328252 46328456 -196335897 - MLT1J LTR MaLR -91 420 237 284 214 43 0 chr1 46328474 46328544 -196335809 - MLT1J LTR MaLR -438 73 1 231 279 139 12 chr1 46329599 46329685 -196334668 - L2 LINE L2 -226 3046 2950 2403 103 0 0 chr1 46330272 46330582 -196333771 - AluSx SINE Alu -2 310 1 191 338 37 7 chr1 46331004 46331140 -196333213 + L2 LINE L2 3093 3232 -81 295 219 295 29 chr1 46331521 46331626 -196332727 - MIR SINE MIR -3 259 127 388 264 126 31 chr1 46331644 46331803 -196332550 + MIR3 SINE MIR 29 202 -6 252 0 0 0 chr1 46331892 46331920 -196332433 + (T)n Simple_repeat Simple_repeat 1 28 0 471 314 48 27 chr1 46332206 46332394 -196331959 - MIR SINE MIR -58 204 13 2456 65 0 16 chr1 46334359 46334532 -196329821 - AluY SINE Alu -7 304 137 2883 3 0 0 chr1 46334532 46334843 -196329510 - AluYa5 SINE Alu 0 311 1 2456 65 0 16 chr1 46334843 46334978 -196329375 - AluY SINE Alu -174 137 1 234 128 0 43 chr1 46334982 46335029 -196329324 - Alu SINE Alu 0 133 89 953 174 0 0 chr1 46335042 46335197 -196329156 - AluJo SINE Alu -157 155 1 676 178 20 0 chr1 46335202 46335348 -196329005 - L1MD3 LINE L1 -1 7994 7846 580 202 0 0 chr1 46335350 46335449 -196328904 + AluJ/FLAM SINE Alu 3 101 -211 1520 213 113 68 chr1 46335464 46335700 -196328653 - L1MC4a LINE L1 -381 7427 7203 760 195 126 21 chr1 46335700 46335890 -196328463 - MER6B DNA MER2_type 0 210 1 1520 213 113 68 chr1 46335890 46335995 -196328358 - L1MC4a LINE L1 -605 7203 7104 2215 110 3 0 chr1 46335995 46336285 -196328068 - AluSq SINE Alu -22 291 1 1520 213 113 68 chr1 46336285 46336605 -196327748 - L1MC4a LINE L1 -704 7104 6735 1148 164 136 50 chr1 46336657 46336937 -196327416 - AluJo SINE Alu 0 312 9 195 283 25 100 chr1 46337180 46337300 -196327053 + L2 LINE L2 3157 3267 -5 757 263 47 51 chr1 46337654 46337909 -196326444 - MIR SINE MIR 0 262 9 22 35 0 0 chr1 46337932 46337961 -196326392 + AT_rich Low_complexity Low_complexity 1 29 0 315 320 113 36 chr1 46338386 46338633 -196325720 - Charlie8 DNA MER1_type -2151 266 1 2183 128 0 3 chr1 46338663 46338967 -196325386 - AluSx SINE Alu -9 303 1 191 323 110 39 chr1 46339006 46339133 -196325220 - L2 LINE L2 -19 3253 3118 205 237 158 26 chr1 46339772 46339848 -196324505 - L3b LINE CR1 -15 1568 1483 21 0 0 0 chr1 46339914 46339935 -196324418 + AT_rich Low_complexity Low_complexity 1 21 0 1702 138 52 31 chr1 46340427 46340716 -196323637 + AluJo SINE Alu 13 307 -5 473 294 102 33 chr1 46340778 46341142 -196323211 + L1MC4a LINE L1 5877 6265 -1543 295 337 83 18 chr1 46341480 46341649 -196322704 - MER5A DNA MER1_type -9 180 1 264 182 0 73 chr1 46341961 46342016 -196322337 - L2 LINE L2 -83 3230 3180 1109 339 113 10 chr1 46342255 46342965 -196321388 - L2 LINE L2 -452 2862 2080 365 196 23 30 chr1 46343104 46343237 -196321116 - L1MCc LINE L1 -4221 2901 2770 1734 169 34 39 chr1 46343237 46343593 -196320760 - MLT1A1 LTR MaLR -2 363 10 3032 256 87 53 chr1 46343603 46346071 -196318282 - L1MCc LINE L1 -4351 2771 23 396 274 126 46 chr1 46346647 46346972 -196317381 - L1ME4a LINE L1 -2 6119 5769 252 0 0 0 chr1 46348400 46348428 -196315925 + (A)n Simple_repeat Simple_repeat 1 28 0 359 272 81 29 chr1 46348464 46348600 -196315753 + L2 LINE L2 3171 3313 0 27 49 0 0 chr1 46349028 46349069 -196315284 + AT_rich Low_complexity Low_complexity 1 41 0 192 77 0 0 chr1 46349478 46349504 -196314849 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2106 126 0 0 chr1 46349506 46349792 -196314561 - AluSx SINE Alu -26 286 1 223 333 178 0 chr1 46349927 46350056 -196314297 - MIR3 SINE MIR -9 199 48 602 270 81 11 chr1 46350121 46350295 -196314058 - MLT1K LTR MaLR -112 476 291 1179 167 138 30 chr1 46351666 46351935 -196312418 - AluJo SINE Alu -9 303 6 282 304 130 43 chr1 46352116 46352438 -196311915 + L3b LINE CR1 1102 1451 -132 1245 246 109 6 chr1 46352985 46353351 -196311002 - L1ME1 LINE L1 -21 6145 5742 1934 130 3 70 chr1 46354594 46354925 -196309428 - AluSx SINE Alu -3 309 1 2592 199 85 26 chr1 46355369 46356273 -196308080 - L1ME2 LINE L1 -229 6433 5466 916 262 94 84 chr1 46356296 46356325 -196308028 - L1ME2 LINE L1 -3873 2952 2925 2284 99 0 3 chr1 46356325 46356617 -196307736 - AluSg SINE Alu -18 292 2 916 262 94 84 chr1 46356617 46357372 -196306981 - L1ME2 LINE L1 -3900 2925 2160 12069 26 1 1 chr1 46357378 46359569 -196304784 - L1PA3 LINE L1 0 6155 3967 7708 32 1 18 chr1 46359570 46360342 -196304011 + L1P LINE L1 2990 3743 -2403 2666 35 3 0 chr1 46360342 46360652 -196303701 + AluY SINE Alu 1 311 0 7708 32 1 18 chr1 46360652 46360870 -196303483 + L1P LINE L1 3743 3963 -2183 677 245 111 82 chr1 46360865 46361538 -196302815 - L1ME2 LINE L1 -4549 2095 1333 * 1740 93 85 8 chr1 46361538 46361785 -196302568 - AluSp SINE Alu -8 305 40 302 359 54 76 chr1 46362474 46362697 -196301656 + L2 LINE L2 3042 3259 -13 3368 109 22 4 chr1 46363119 46363625 -196300728 + L1PA8 LINE L1 5658 6172 0 3269 192 66 44 chr1 46363769 46363806 -196300547 - L1MB7 LINE L1 -16 6168 6133 2502 57 0 0 chr1 46363806 46364106 -196300247 - AluY SINE Alu -11 300 1 3269 192 66 44 chr1 46364106 46365058 -196299295 - L1MB7 LINE L1 -51 6133 5154 * 5447 141 35 35 chr1 46365049 46366421 -196297932 - L1MA4A LINE L1 -5 6298 4910 9865 200 106 54 chr1 46366421 46367173 -196297180 - L1 LINE L1 -1883 4965 4253 2233 77 45 0 chr1 46367173 46367459 -196296894 - AluSg SINE Alu -11 299 1 9865 200 106 54 chr1 46367459 46367834 -196296519 - L1 LINE L1 -2595 4253 3899 811 224 15 24 chr1 46367834 46368039 -196296314 - AluJo SINE Alu -24 288 86 9865 200 106 54 chr1 46368039 46371448 -196292905 - L1 LINE L1 -2949 3899 32 2679 207 44 15 chr1 46371451 46372114 -196292239 - L1M4 LINE L1 -946 5200 4519 1646 181 34 17 chr1 46372492 46372846 -196291507 + Looper DNA T2_type 1009 1368 -190 3002 221 104 78 chr1 46372850 46373516 -196290837 + L1ME1 LINE L1 3853 4500 -1646 1552 167 76 4 chr1 46373516 46373792 -196290561 + AluJb SINE Alu 1 296 -16 3002 221 104 78 chr1 46373792 46374027 -196290326 + L1ME1 LINE L1 4500 4727 -1419 1907 139 13 10 chr1 46374027 46374329 -196290024 + AluSx SINE Alu 1 303 -9 3002 221 104 78 chr1 46374329 46374398 -196289955 + L1ME1 LINE L1 4727 4793 -1353 324 102 0 0 chr1 46374398 46374447 -196289906 + (TG)n Simple_repeat Simple_repeat 2 50 0 3002 221 104 78 chr1 46374447 46374867 -196289486 + L1ME1 LINE L1 4793 5200 -946 735 116 0 0 chr1 46374867 46374979 -196289374 + (TA)n Simple_repeat Simple_repeat 2 113 0 2214 91 0 0 chr1 46374979 46375265 -196289088 - AluY SINE Alu -25 286 1 3002 221 104 78 chr1 46375265 46375314 -196289039 + L1ME1 LINE L1 5199 5334 -812 830 255 41 0 chr1 46375360 46375603 -196288750 + L1ME1 LINE L1 5303 5555 -611 512 268 120 29 chr1 46375606 46375856 -196288497 + L1ME1 LINE L1 5903 6332 -2 1264 213 7 28 chr1 46375868 46376154 -196288199 + AluJo SINE Alu 5 284 -28 892 134 0 8 chr1 46376370 46376497 -196287856 + AluJb SINE Alu 1 126 -186 2072 113 36 0 chr1 46376507 46376808 -196287545 + AluSx SINE Alu 1 312 0 11384 77 4 6 chr1 46376809 46378317 -196286036 + L1P LINE L1 3 1507 -4639 12337 33 11 0 chr1 46378317 46380556 -196283797 + L1PA4 LINE L1 3906 6155 0 363 257 79 1 chr1 46380563 46380681 -196283672 + AluJb SINE Alu 140 250 -52 1483 169 47 0 chr1 46380707 46380986 -196283367 - L1MB3 LINE L1 -11 6172 5881 2253 84 0 37 chr1 46381004 46381326 -196283027 - AluY SINE Alu -1 310 1 1937 196 27 10 chr1 46381326 46381650 -196282703 - L1MB3 LINE L1 -352 5831 5497 1982 148 34 8 chr1 46381650 46382002 -196282351 + MER46B DNA MER2_type 1 236 0 1937 196 27 10 chr1 46382002 46382080 -196282273 - L1MB3 LINE L1 -686 5497 5422 461 326 83 71 chr1 46382951 46383374 -196280979 - L2 LINE L2 -9 3263 2836 256 170 21 0 chr1 46383810 46383857 -196280496 + L2 LINE L2 3263 3310 -3 386 341 72 0 chr1 46385254 46385392 -196278961 + L2 LINE L2 3121 3268 -4 2127 110 14 0 chr1 46385738 46386029 -196278324 - AluSx SINE Alu -17 295 1 1732 145 40 20 chr1 46387257 46387554 -196276799 - AluJb SINE Alu -9 303 1 1526 126 5 5 chr1 46387681 46387904 -196276449 - AluSg/x SINE Alu -5 305 83 306 275 12 12 chr1 46388193 46388273 -196276080 + MIR SINE MIR 59 138 -124 492 298 229 5 chr1 46388316 46388504 -196275849 - MIR SINE MIR -30 232 3 259 293 0 71 chr1 46389210 46389309 -196275044 - L2 LINE L2 -1 3271 3180 450 273 9 27 chr1 46389504 46389614 -196274739 - L2 LINE L2 -24 3289 3182 256 264 198 11 chr1 46389787 46389878 -196274475 - L2 LINE L2 -29 3243 3136 270 256 100 0 chr1 46389898 46389988 -196274365 - MER94 DNA DNA -31 103 5 228 323 54 31 chr1 46390007 46390137 -196274216 - L2 LINE L2 -173 3099 2967 600 53 0 0 chr1 46390248 46390324 -196274029 + (TTC)n Simple_repeat Simple_repeat 3 78 0 328 26 0 0 chr1 46390324 46390362 -196273991 + (CCCCCT)n Simple_repeat Simple_repeat 5 42 0 815 141 7 22 chr1 46390365 46390500 -196273853 - FLAM_C SINE Alu 0 133 1 1084 167 8 33 chr1 46390618 46390871 -196273482 + AluJo SINE Alu 9 297 -15 1036 169 143 29 chr1 46391059 46391366 -196272987 + Charlie1b DNA MER1_type 44 385 -138 1029 260 155 14 chr1 46391459 46391821 -196272532 - LTR16C LTR ERVL 0 491 79 1102 196 113 11 chr1 46392400 46392665 -196271688 - AluJb SINE Alu -9 293 2 1123 72 48 6 chr1 46392832 46392999 -196271354 - Tigger7 DNA MER2_type 0 2491 2318 1391 201 72 4 chr1 46393000 46393264 -196271089 - Tigger7 DNA MER2_type -2205 282 1 1169 246 36 36 chr1 46393403 46393737 -196270616 - L2 LINE L2 -367 2947 2614 322 241 101 8 chr1 46394436 46394590 -196269763 - L1MA10 LINE L1 0 6334 6005 1096 236 70 21 chr1 46394604 46394789 -196269564 - L1M4 LINE L1 -1576 4570 4395 2261 89 0 0 chr1 46394789 46395080 -196269273 - AluSc SINE Alu -18 291 1 1096 236 70 21 chr1 46395080 46395267 -196269086 - L1M4 LINE L1 -1751 4395 4180 2210 232 105 72 chr1 46395287 46395797 -196268556 - L1ME LINE L1 -3890 2190 1698 2752 3 0 0 chr1 46395797 46396091 -196268262 - AluY SINE Alu -16 295 2 2210 232 105 72 chr1 46396091 46396328 -196268025 - L1ME LINE L1 -4382 1698 1470 696 160 48 8 chr1 46396328 46396453 -196267900 - FLAM_C SINE Alu -3 130 1 2210 232 105 72 chr1 46396453 46397579 -196266774 - L1ME LINE L1 -4610 1470 282 2020 164 166 7 chr1 46398273 46398724 -196265629 - L1MA7 LINE L1 0 6291 5769 4081 202 99 30 chr1 46398745 46400068 -196264285 - L1PBa LINE L1 -3660 2543 1131 2016 119 18 0 chr1 46400077 46400354 -196263999 - AluSx SINE Alu -28 284 3 4821 170 32 34 chr1 46400357 46401344 -196263009 - L1PBa LINE L1 -5219 985 1 2930 278 35 78 chr1 46401319 46403018 -196261335 - L1PBa LINE L1 -5234 1629 3 * 3161 157 14 29 chr1 46403033 46403255 -196261098 - L1 LINE L1 -1765 4381 4157 2008 160 34 11 chr1 46403255 46403611 -196260742 + MER47A DNA MER2_type 2 365 -1 3161 157 14 29 chr1 46403611 46404045 -196260308 - L1 LINE L1 -1989 4157 3735 412 314 51 13 chr1 46404118 46404274 -196260079 - MIR SINE MIR -21 241 80 1603 170 58 25 chr1 46405027 46405200 -196259153 + L1MA4 LINE L1 5891 6057 -243 2019 126 14 3 chr1 46405200 46405506 -196258847 + AluSx SINE Alu 1 309 0 1603 170 58 25 chr1 46405506 46405725 -196258628 + L1MA4 LINE L1 6057 6298 -2 827 282 61 48 chr1 46405746 46406204 -196258149 - MLT1J LTR MaLR -47 464 1 256 316 0 0 chr1 46407280 46407359 -196256994 + CT-rich Low_complexity Low_complexity 2 80 0 180 330 0 75 chr1 46407643 46407737 -196256616 + MER5A DNA MER1_type 71 157 -32 2312 107 0 0 chr1 46408315 46408614 -196255739 - AluSx SINE Alu -13 299 1 375 231 0 50 chr1 46409179 46409339 -196255014 + L1MEd LINE L1 949 1100 -5019 859 163 0 7 chr1 46409492 46409627 -196254726 + AluSq/x SINE Alu 1 134 -178 473 231 20 14 chr1 46409684 46409831 -196254522 - L1MEc LINE L1 -4488 1908 1761 703 201 100 20 chr1 46409922 46410221 -196254132 + L1MEc LINE L1 844 1166 -5230 921 300 64 9 chr1 46410246 46410793 -196253560 + L1M4 LINE L1 3269 3845 -2301 278 227 67 0 chr1 46410819 46410894 -196253459 - Charlie1 DNA MER1_type -1070 1691 1612 744 297 113 3 chr1 46410906 46411233 -196253120 + L1M4 LINE L1 3972 4334 -1812 347 249 72 114 chr1 46411348 46411544 -196252809 + L1M4 LINE L1 4501 4687 -1459 2212 101 0 19 chr1 46411544 46411852 -196252501 + AluSg SINE Alu 1 302 -8 347 249 72 114 chr1 46411852 46411892 -196252461 + L1M4 LINE L1 4687 4727 -1419 326 188 126 1 chr1 46412008 46412098 -196252255 + L1ME3 LINE L1 5896 5996 -174 386 231 22 11 chr1 46412176 46412267 -196252086 + Charlie1 DNA MER1_type 1 92 -2669 682 47 0 0 chr1 46412298 46412383 -196251970 - AluSc SINE Alu -7 302 218 23 33 0 0 chr1 46412675 46412705 -196251648 + AT_rich Low_complexity Low_complexity 1 30 0 365 194 0 15 chr1 46414271 46414338 -196250015 - MER2 DNA MER2_type 0 345 280 1178 148 184 0 chr1 46414399 46414622 -196249731 + AluJo SINE Alu 11 274 -38 201 74 0 0 chr1 46414627 46414654 -196249699 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 876 153 102 31 chr1 46414660 46414856 -196249497 - MER2 DNA MER2_type -135 210 1 744 185 7 22 chr1 46414971 46415106 -196249247 - FLAM_C SINE Alu 0 133 1 362 284 39 54 chr1 46415106 46415310 -196249043 + HAL1b LINE L1 415 615 -733 22 0 0 0 chr1 46415323 46415345 -196249008 + AT_rich Low_complexity Low_complexity 1 22 0 2117 130 0 3 chr1 46415618 46415917 -196248436 - AluSx SINE Alu -14 298 1 1087 271 59 65 chr1 46416024 46416530 -196247823 - REP3 LTR ERV -57 505 3 334 311 97 0 chr1 46416925 46417077 -196247276 + MIR3 SINE MIR 12 176 -32 409 310 21 0 chr1 46417612 46417754 -196246599 + MER117 DNA MER1_type 1 145 -52 1250 182 84 95 chr1 46418187 46418556 -196245797 - MLT1A1 LTR MaLR 0 365 1 221 263 0 35 chr1 46418582 46418639 -196245714 - L2 LINE L2 -69 3244 3190 466 204 120 19 chr1 46418940 46419048 -196245305 + MIR3 SINE MIR 42 160 -48 2265 101 75 19 chr1 46419789 46420165 -196244188 + LTR10E LTR ERV1 1 397 -236 392 310 9 17 chr1 46421317 46421433 -196242920 - MIR SINE MIR -117 145 31 274 342 67 17 chr1 46421692 46421812 -196242541 + MIR3 SINE MIR 40 165 -43 390 256 123 10 chr1 46422633 46422754 -196241599 + MIR SINE MIR 31 164 -60 2246 106 0 0 chr1 46425181 46425482 -196238871 + AluSx SINE Alu 1 301 -11 343 367 7 27 chr1 46426251 46426398 -196237955 - MIR3 SINE MIR -30 178 35 312 369 39 93 chr1 46426652 46426803 -196237550 - L2 LINE L2 0 3272 3145 2171 66 0 11 chr1 46426803 46427076 -196237277 + AluY SINE Alu 35 304 -7 312 369 39 93 chr1 46427076 46427236 -196237117 - L2 LINE L2 -127 3145 2978 * 1127 245 78 37 chr1 46427234 46427764 -196236589 + L2 LINE L2 2709 3270 -43 215 275 66 44 chr1 46428447 46428538 -196235815 + MIR3 SINE MIR 101 193 -15 537 300 109 84 chr1 46428986 46430007 -196234346 - L1M2 LINE L1 -5371 1478 445 234 0 0 0 chr1 46431231 46431257 -196233096 + (A)n Simple_repeat Simple_repeat 1 26 0 359 272 81 29 chr1 46431293 46431429 -196232924 + L2 LINE L2 3171 3313 0 27 49 0 0 chr1 46431857 46431898 -196232455 + AT_rich Low_complexity Low_complexity 1 41 0 192 77 0 0 chr1 46432307 46432333 -196232020 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2106 126 0 0 chr1 46432335 46432621 -196231732 - AluSx SINE Alu -26 286 1 233 310 148 39 chr1 46432756 46432911 -196231442 - MIR3 SINE MIR -9 199 28 545 270 81 11 chr1 46432950 46433124 -196231229 - MLT1K LTR MaLR -112 476 291 1206 167 138 30 chr1 46434495 46434764 -196229589 - AluJo SINE Alu -9 303 6 265 304 130 43 chr1 46434945 46435267 -196229086 + L3b LINE CR1 1102 1451 -132 1135 243 92 6 chr1 46435814 46436160 -196228193 - L1ME1 LINE L1 -21 6145 5770 1982 129 3 69 chr1 46437423 46437756 -196226597 - AluSx SINE Alu -1 311 1 2479 202 86 17 chr1 46438199 46439095 -196225258 - L1ME2 LINE L1 -229 6004 5037 738 262 94 84 chr1 46439118 46439147 -196225206 - L1ME2 LINE L1 -3873 2523 2496 2291 99 0 3 chr1 46439147 46439439 -196224914 - AluSg SINE Alu -18 292 2 738 262 94 84 chr1 46439439 46440194 -196224159 - L1ME2 LINE L1 -3900 2496 1731 12498 27 1 1 chr1 46440200 46442452 -196221901 - L1PA4 LINE L1 -1 6154 3906 10816 77 4 6 chr1 46442452 46443960 -196220393 - L1P LINE L1 -4639 1507 3 2072 120 36 0 chr1 46443961 46444262 -196220091 - AluSx SINE Alu 0 312 1 912 135 8 8 chr1 46444266 46444399 -196219954 - AluJb SINE Alu -179 133 1 1322 210 7 28 chr1 46444615 46444901 -196219452 - AluJo SINE Alu -28 284 5 230 278 9 26 chr1 46444913 46444933 -196219420 - L1MA10 LINE L1 -2 6332 6313 438 261 130 30 chr1 46444933 46445163 -196219190 - L1ME1 LINE L1 -11 6155 5903 763 255 41 0 chr1 46445166 46445409 -196218944 - L1ME1 LINE L1 -611 5555 5303 2198 98 0 0 chr1 46445504 46445791 -196218562 + AluY SINE Alu 1 287 -24 317 322 0 0 chr1 46445792 46445882 -196218471 + L1MC4 LINE L1 6614 6703 -1339 * 331 311 0 0 chr1 46445806 46445896 -196218457 - L1MC4 LINE L1 -1339 6703 6614 2679 224 108 70 chr1 46445907 46446316 -196218037 - L1ME1 LINE L1 -859 5287 4895 288 111 0 0 chr1 46446316 46446361 -196217992 + (CA)n Simple_repeat Simple_repeat 2 46 0 2679 224 108 70 chr1 46446361 46446430 -196217923 - L1ME1 LINE L1 -1251 4895 4830 1940 139 13 10 chr1 46446430 46446732 -196217621 - AluSx SINE Alu -9 303 1 2679 224 108 70 chr1 46446732 46446967 -196217386 - L1ME1 LINE L1 -1316 4830 4605 1570 167 76 4 chr1 46446967 46447243 -196217110 - AluJb SINE Alu -16 296 1 2679 224 108 70 chr1 46447243 46447909 -196216444 - L1ME1 LINE L1 -1541 4605 3853 1548 181 34 17 chr1 46447913 46448267 -196216086 - Looper DNA T2_type -190 1368 1009 2480 208 44 15 chr1 46448645 46449308 -196215045 + L1M4 LINE L1 4519 5200 -946 7538 200 82 85 chr1 46449311 46452720 -196211633 + L1MA4A LINE L1 32 3447 -3401 804 224 14 31 chr1 46452720 46452943 -196211410 + AluJo SINE Alu 86 304 -8 7538 200 82 85 chr1 46452943 46453300 -196211053 + L1MA4A LINE L1 3447 3803 -3045 2235 81 46 0 chr1 46453300 46453583 -196210770 + AluSg SINE Alu 1 296 -14 7538 200 82 85 chr1 46453583 46454337 -196210016 + L1MA4A LINE L1 3803 4965 -1883 5574 142 35 35 chr1 46454337 46455709 -196208644 + L1MA4A LINE L1 5612 7000 -5 3337 191 66 44 chr1 46455700 46456652 -196207701 + L1MB7 LINE L1 5154 6133 -51 * 2495 58 0 0 chr1 46456652 46456946 -196207407 + AluY SINE Alu 1 294 -17 3337 191 66 44 chr1 46456946 46456983 -196207370 + L1MB7 LINE L1 6133 6168 -16 3440 109 22 4 chr1 46457125 46457631 -196206722 - L1PA8 LINE L1 0 6172 5658 220 377 45 67 chr1 46458053 46458276 -196206077 - L2 LINE L2 -13 3259 3042 1765 93 85 8 chr1 46458965 46459212 -196205141 + AluSp SINE Alu 40 305 -8 678 273 93 59 chr1 46459244 46459888 -196204465 + L1MEc LINE L1 1091 1756 -4640 * 7615 33 1 19 chr1 46459881 46460099 -196204254 - L1P LINE L1 -2183 3963 3743 2634 37 3 0 chr1 46460099 46460399 -196203954 - AluY SINE Alu -10 301 1 7615 33 1 19 chr1 46460399 46461144 -196203209 - L1P LINE L1 -2403 3743 3017 12259 31 11 0 chr1 46461148 46463350 -196201003 + L1PA4 LINE L1 3947 6155 0 376 226 64 39 chr1 46463350 46463475 -196200878 + AluJb SINE Alu 139 250 -52 1508 169 47 0 chr1 46463501 46463780 -196200573 - L1MB3 LINE L1 -11 6172 5881 2310 84 0 34 chr1 46463798 46464119 -196200234 - AluY SINE Alu -1 310 1 1985 196 25 10 chr1 46464119 46464444 -196199909 - L1MB3 LINE L1 -352 5831 5497 2010 151 34 8 chr1 46464444 46464796 -196199557 + MER46B DNA MER2_type 1 236 0 1985 196 25 10 chr1 46464796 46464874 -196199479 - L1MB3 LINE L1 -686 5497 5422 343 336 50 0 chr1 46465745 46465864 -196198489 - L2 LINE L2 -9 3304 3180 240 170 21 0 chr1 46466606 46466653 -196197700 + L2 LINE L2 3263 3310 -3 12635 29 10 0 chr1 46467603 46469836 -196194517 - L1PA4 LINE L1 -21 6134 3883 11594 78 4 6 chr1 46469814 46471326 -196193027 - L1P LINE L1 -4635 1511 3 * 1970 120 43 0 chr1 46471327 46471626 -196192727 - AluSx SINE Alu 0 312 1 912 135 8 8 chr1 46471630 46471763 -196192590 - AluJb SINE Alu -179 133 1 1258 213 7 28 chr1 46471979 46472265 -196192088 - AluJo SINE Alu -28 284 5 260 278 9 26 chr1 46472277 46472291 -196192062 - L1MA10 LINE L1 -2 6332 6319 525 267 127 30 chr1 46472291 46472527 -196191826 - L1ME1 LINE L1 -5 6161 5903 855 255 41 0 chr1 46472530 46472773 -196191580 - L1ME1 LINE L1 -611 5555 5303 3124 219 104 80 chr1 46472819 46472868 -196191485 - L1ME1 LINE L1 -812 5334 5288 2252 91 0 0 chr1 46472868 46473154 -196191199 + AluY SINE Alu 1 286 -25 735 116 0 0 chr1 46473154 46473266 -196191087 + (TA)n Simple_repeat Simple_repeat 2 113 0 3124 219 104 80 chr1 46473266 46473686 -196190667 - L1ME1 LINE L1 -858 5288 4879 324 102 0 0 chr1 46473686 46473735 -196190618 + (CA)n Simple_repeat Simple_repeat 2 50 0 3124 219 104 80 chr1 46473735 46473804 -196190549 - L1ME1 LINE L1 -1267 4879 4813 1748 146 24 10 chr1 46473804 46474098 -196190255 - AluSx SINE Alu -9 303 6 3124 219 104 80 chr1 46474098 46474337 -196190016 - L1ME1 LINE L1 -1333 4813 4581 1576 167 76 4 chr1 46474337 46474613 -196189740 - AluJb SINE Alu -16 296 1 3124 219 104 80 chr1 46474613 46475279 -196189074 - L1ME1 LINE L1 -1565 4581 3853 1688 181 34 17 chr1 46475283 46475637 -196188716 - Looper DNA T2_type -190 1368 1009 2735 213 43 15 chr1 46476003 46476678 -196187675 + L1M4 LINE L1 4507 5200 -946 9845 190 123 34 chr1 46476681 46480085 -196184268 + L1M2 LINE L1 32 3833 -3015 804 224 14 31 chr1 46480086 46480309 -196184044 + AluJo SINE Alu 86 304 -8 1200 198 57 20 chr1 46480311 46480665 -196183688 + L1M2 LINE L1 3839 4205 -2643 2305 104 0 0 chr1 46480666 46480954 -196183399 + AluSx SINE Alu 1 288 -24 489 214 43 24 chr1 46480964 46481137 -196183216 + MIR SINE MIR 36 206 -56 264 30 0 0 chr1 46481565 46481598 -196182755 + (TG)n Simple_repeat Simple_repeat 1 33 0 324 298 56 19 chr1 46481745 46481906 -196182447 + L3 LINE CR1 1409 1575 -2 328 290 186 7 chr1 46482173 46482318 -196182035 - MIR3 SINE MIR -19 189 19 744 186 93 10 chr1 46482532 46482725 -196181628 + MIR SINE MIR 29 237 -25 402 292 129 10 chr1 46483377 46483581 -196180772 + MIR SINE MIR 30 256 -6 2113 125 3 3 chr1 46484664 46484961 -196179392 - AluSx SINE Alu -15 297 1 269 115 0 19 chr1 46485655 46485707 -196178646 + (TG)n Simple_repeat Simple_repeat 2 52 0 534 283 18 18 chr1 46487085 46487251 -196177102 + MIR SINE MIR 73 238 -24 317 343 50 14 chr1 46487285 46487425 -196176928 - MIR SINE MIR -98 164 20 363 214 111 40 chr1 46488145 46488271 -196176082 - MIR SINE MIR -122 140 6 259 114 0 0 chr1 46488646 46488681 -196175672 + U2 snRNA snRNA 1 35 -153 469 248 22 15 chr1 46488723 46488860 -196175493 - MIR3 SINE MIR -10 198 61 297 331 33 0 chr1 46488877 46488998 -196175355 - MIR SINE MIR -31 231 107 463 266 61 109 chr1 46489625 46489854 -196174499 - MIR SINE MIR -44 218 1 291 183 98 41 chr1 46490583 46490727 -196173626 - MIR SINE MIR -90 118 16 252 0 0 0 chr1 46490978 46491006 -196173347 + (TG)n Simple_repeat Simple_repeat 1 28 0 339 186 58 12 chr1 46491563 46491649 -196172704 + MIR SINE MIR 91 180 -82 193 258 45 68 chr1 46491878 46492010 -196172343 + L2 LINE L2 2664 2792 -522 294 213 147 44 chr1 46492640 46492776 -196171577 + MIR SINE MIR 23 172 -90 312 224 0 53 chr1 46493026 46493102 -196171251 - MER91A DNA MER1_type -124 72 1 278 165 17 95 chr1 46493102 46493209 -196171144 + MIR SINE MIR 84 189 -19 198 271 34 0 chr1 46493634 46493693 -196170660 + MIR SINE MIR 196 256 -6 302 267 72 92 chr1 46493736 46493987 -196170366 - L2 LINE L2 -6 3266 3021 227 220 20 0 chr1 46493995 46494045 -196170308 - MIR SINE MIR -107 155 105 2138 96 0 7 chr1 46494058 46494330 -196170023 - AluSg SINE Alu -40 270 1 204 359 28 0 chr1 46495200 46495342 -196169011 + (CCCCAA)n Simple_repeat Simple_repeat 2 147 0 280 278 26 46 chr1 46495607 46495758 -196168595 + C-rich Low_complexity Low_complexity 5 152 0 326 290 22 25 chr1 46495800 46496132 -196168221 + (CA)n Simple_repeat Simple_repeat 1 330 0 355 190 33 54 chr1 46496155 46496339 -196168014 + (CA)n Simple_repeat Simple_repeat 1 180 0 403 211 22 52 chr1 46496409 46497054 -196167299 + (CA)n Simple_repeat Simple_repeat 1 626 0 289 248 14 23 chr1 46497130 46497352 -196167001 + (CA)n Simple_repeat Simple_repeat 1 219 0 339 242 31 110 chr1 46497937 46498164 -196166189 - MIR SINE MIR -11 251 43 323 246 142 22 chr1 46499131 46499265 -196165088 - MIR SINE MIR -27 181 32 538 242 99 21 chr1 46501482 46501669 -196162684 + MIR SINE MIR 51 250 -12 406 237 184 16 chr1 46502052 46502225 -196162128 + MIR SINE MIR 7 202 -60 847 270 14 5 chr1 46502225 46502440 -196161913 + MIR SINE MIR 1 217 -45 1609 183 63 3 chr1 46502445 46502827 -196161526 + L1MA8 LINE L1 2873 3277 -2869 * 6377 143 45 45 chr1 46502818 46503784 -196160569 + L1MA8 LINE L1 4033 4998 -1293 645 211 23 0 chr1 46503784 46503912 -196160441 + FLAM_A SINE Alu 3 133 0 6377 143 45 45 chr1 46503912 46504246 -196160107 + L1MA8 LINE L1 4998 5331 -960 2279 93 0 0 chr1 46504246 46504547 -196159806 - AluSx SINE Alu -9 303 3 6377 143 45 45 chr1 46504547 46504705 -196159648 + L1MA8 LINE L1 5331 5488 -803 667 206 0 37 chr1 46504705 46504824 -196159529 + FLAM_A SINE Alu 1 123 -179 189 0 0 0 chr1 46504824 46504845 -196159508 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 * 414 0 0 0 chr1 46504844 46504890 -196159463 + (CA)n Simple_repeat Simple_repeat 2 47 0 667 206 0 37 chr1 46504845 46504906 -196159447 + FLAM_A SINE Alu 123 131 -171 6377 143 45 45 chr1 46504906 46505438 -196158915 + L1MA8 LINE L1 5488 6024 -267 713 272 48 28 chr1 46506207 46506457 -196157896 + MIR SINE MIR 7 261 -1 24 0 0 29 chr1 46506457 46506477 -196157876 + AT_rich Low_complexity Low_complexity 1 21 -13 1806 133 58 0 chr1 46506477 46506770 -196157583 - AluSq SINE Alu -3 310 1 24 0 0 29 chr1 46506770 46506784 -196157569 + AT_rich Low_complexity Low_complexity 21 34 0 1502 213 0 0 chr1 46506784 46507071 -196157282 - AluJo SINE Alu -24 288 2 409 263 222 30 chr1 46508031 46508229 -196156124 + MIR SINE MIR 22 257 -5 183 289 48 12 chr1 46508235 46508318 -196156035 + L2 LINE L2 2979 3064 -249 243 222 184 22 chr1 46508957 46509081 -196155272 + MIR SINE MIR 4 136 -72 356 271 47 13 chr1 46509415 46509543 -196154810 + L2 LINE L2 2921 3052 -220 421 264 32 46 chr1 46510242 46510468 -196153885 - MIR SINE MIR -20 242 18 436 299 56 21 chr1 46510759 46510903 -196153450 + MIR SINE MIR 34 182 -80 312 258 219 8 chr1 46511493 46511621 -196152732 - MIR SINE MIR 0 262 108 599 240 6 71 chr1 46511723 46511911 -196152442 + MIR SINE MIR 30 203 -39 300 306 95 14 chr1 46512076 46512223 -196152130 + MIR SINE MIR 24 182 -80 1299 269 219 21 chr1 46512783 46513341 -196151012 + L2 LINE L2 1963 2630 -684 307 111 19 0 chr1 46513368 46513422 -196150931 + (CA)n Simple_repeat Simple_repeat 2 56 0 229 137 20 20 chr1 46513445 46513496 -196150857 - MLT2C2 LTR ERVL -330 134 84 248 258 298 7 chr1 46513509 46513660 -196150693 + L2 LINE L2 3082 3276 -37 2260 153 35 20 chr1 46513699 46513902 -196150451 - MLT2C2 LTR ERVL -54 410 212 1879 93 0 0 chr1 46513902 46514173 -196150180 - AluSx SINE Alu 0 306 36 2260 153 35 20 chr1 46514173 46514372 -196149981 - MLT2C2 LTR ERVL -252 212 1 898 259 189 16 chr1 46514389 46514919 -196149434 + L2 LINE L2 2650 3313 0 206 303 16 7 chr1 46514925 46515002 -196149351 + MIR SINE MIR 51 126 -136 185 292 21 0 chr1 46515002 46515050 -196149303 + L2 LINE L2 3212 3260 -12 255 206 175 21 chr1 46515142 46515239 -196149114 - L2 LINE L2 -2 3311 3200 * 1814 268 146 9 chr1 46515238 46515932 -196148421 - L2 LINE L2 -719 2595 1807 303 28 0 0 chr1 46516285 46516321 -196148032 + (CA)n Simple_repeat Simple_repeat 2 37 0 223 203 34 0 chr1 46516930 46516989 -196147364 + (TG)n Simple_repeat Simple_repeat 1 61 0 288 293 9 9 chr1 46517008 46517337 -196147016 + (TG)n Simple_repeat Simple_repeat 1 329 0 207 281 85 0 chr1 46517867 46517949 -196146404 - MIR SINE MIR -79 183 95 389 284 47 29 chr1 46519817 46520042 -196144311 + MLT1J2 LTR MaLR 1 226 -224 740 269 170 35 chr1 46520115 46520598 -196143755 + MLT1H LTR MaLR 2 549 0 233 394 56 0 chr1 46520770 46520950 -196143403 + L2 LINE L2 2811 3000 -313 292 324 19 19 chr1 46521085 46521193 -196143160 + L2 LINE L2 3203 3310 -3 648 246 86 67 chr1 46521346 46521590 -196142763 + MIR SINE MIR 8 251 -11 1470 158 7 11 chr1 46521685 46521970 -196142383 + AluSg1 SINE Alu 1 284 -25 292 324 19 19 chr1 46522294 46522402 -196141951 + L2 LINE L2 3203 3310 -3 648 246 86 67 chr1 46522555 46522799 -196141554 + MIR SINE MIR 8 251 -11 1843 135 3 3 chr1 46522904 46523200 -196141153 + AluSg1 SINE Alu 12 307 -2 2185 98 0 3 chr1 46523659 46523964 -196140389 - AluY SINE Alu -4 307 4 468 239 105 0 chr1 46524175 46524320 -196140033 + MIR SINE MIR 25 196 -62 694 176 34 47 chr1 46524465 46524613 -196139740 - MIR SINE MIR -10 252 107 3239 193 74 46 chr1 46524780 46525560 -196138793 + L1ME1 LINE L1 5149 5963 -203 2745 99 3 3 chr1 46525560 46525924 -196138429 - THE1B LTR MaLR 0 364 1 3239 193 74 46 chr1 46525924 46526129 -196138224 + L1ME1 LINE L1 5963 6161 -5 779 210 15 56 chr1 46527142 46527337 -196137016 - MER20 DNA MER1_type -32 187 1 1275 199 65 10 chr1 46527420 46527727 -196136626 + MER33 DNA MER1_type 1 324 0 308 242 0 11 chr1 46527889 46527980 -196136373 + GA-rich Low_complexity Low_complexity 1 90 0 203 323 102 32 chr1 46527980 46528166 -196136187 - L2 LINE L2 -338 2976 2778 869 207 53 53 chr1 46528238 46528465 -196135888 + MIR SINE MIR 19 245 -17 696 261 73 33 chr1 46529525 46529770 -196134583 - MLT1L LTR MaLR -242 373 119 395 324 58 7 chr1 46529828 46529967 -196134386 - L2 LINE L2 -539 2775 2630 964 222 38 9 chr1 46530266 46530478 -196133875 + MER58A DNA MER1_type 4 221 -3 22 35 0 0 chr1 46531579 46531608 -196132745 + AT_rich Low_complexity Low_complexity 1 29 0 329 330 0 0 chr1 46531695 46531798 -196132555 - MIR SINE MIR 0 262 160 511 192 56 40 chr1 46531804 46531929 -196132424 - L2 LINE L2 0 3313 3187 1864 161 0 0 chr1 46532092 46532403 -196131950 - AluSx SINE Alu -1 311 1 351 208 104 0 chr1 46532557 46532653 -196131700 - MLT1K LTR MaLR -122 466 361 1890 112 0 87 chr1 46533420 46533742 -196130611 - AluY SINE Alu -17 294 1 247 369 134 7 chr1 46534675 46534824 -196129529 - L2 LINE L2 -3 3269 3102 2106 99 0 0 chr1 46534887 46535171 -196129182 + AluSx SINE Alu 1 284 -28 444 225 296 12 chr1 46535268 46535437 -196128916 - MIR SINE MIR -38 224 8 351 320 135 23 chr1 46535468 46535727 -196128626 - L2 LINE L2 -443 2871 2584 358 320 45 29 chr1 46536759 46537003 -196127350 + L1MEd LINE L1 566 813 -5306 338 338 8 23 chr1 46537013 46537146 -196127207 - L2 LINE L2 -21 3292 3162 1481 217 147 37 chr1 46537151 46537634 -196126719 + MLT1H LTR MaLR 1 536 -13 322 319 50 71 chr1 46537647 46537970 -196126383 - L2 LINE L2 -130 3142 2827 248 230 112 66 chr1 46538013 46538165 -196126188 - HAL1b LINE L1 -457 891 733 994 244 144 42 chr1 46538357 46538766 -196125587 - HAL1 LINE L1 -566 1941 1491 415 264 43 82 chr1 46538787 46538995 -196125358 - L1ME3A LINE L1 -9 6144 5945 797 240 45 42 chr1 46539046 46539354 -196124999 - L1ME3A LINE L1 -197 5956 5648 336 67 0 0 chr1 46539354 46539399 -196124954 - MADE1 DNA Mariner -34 46 2 1148 245 61 75 chr1 46539446 46539744 -196124609 - L1ME3A LINE L1 -725 5428 5127 1840 143 3 0 chr1 46539744 46540030 -196124323 - AluJb SINE Alu -13 299 13 1148 245 61 75 chr1 46540030 46540388 -196123965 - L1ME3A LINE L1 -1026 5127 4804 441 66 0 0 chr1 46540388 46540449 -196123904 + (CA)n Simple_repeat Simple_repeat 2 62 0 1148 245 61 75 chr1 46540449 46540762 -196123591 - L1ME3A LINE L1 -1349 4804 4488 1118 244 157 29 chr1 46540768 46541251 -196123102 - MLT1H1 LTR MaLR -8 547 3 246 242 110 0 chr1 46541264 46541355 -196122998 - L1 LINE L1 -1656 4473 4373 3162 204 29 22 chr1 46541379 46542059 -196122294 - L1ME1 LINE L1 -5 6161 5477 788 276 99 76 chr1 46542058 46542328 -196122025 - L1MEd LINE L1 -4614 1696 1434 * 2159 109 0 0 chr1 46542328 46542621 -196121732 + AluSx SINE Alu 1 293 -19 788 276 99 76 chr1 46542621 46543284 -196121069 - L1MEd LINE L1 -4876 1434 694 788 256 5 40 chr1 46543311 46543534 -196120819 - MER58C DNA MER1_type 0 215 1 258 230 40 79 chr1 46543954 46544080 -196120273 + L1MC4a LINE L1 6613 6733 -1075 1444 200 32 0 chr1 46544405 46544690 -196119663 - AluJb SINE Alu -18 294 1 780 189 44 58 chr1 46545408 46545614 -196118739 + MER3 DNA MER1_type 2 204 -5 403 256 207 6 chr1 46546443 46546607 -196117746 + MIR SINE MIR 18 214 -48 3075 247 148 63 chr1 46546848 46548181 -196116172 + L2 LINE L2 1276 2761 -553 1901 145 7 0 chr1 46548181 46548478 -196115875 + AluSx SINE Alu 1 299 -13 3075 247 148 63 chr1 46548478 46548696 -196115657 + L2 LINE L2 2761 2959 -355 199 260 89 49 chr1 46548666 46548789 -196115564 + L2 LINE L2 2825 2952 -320 * 257 283 33 0 chr1 46548987 46549079 -196115274 + L1ME LINE L1 5484 5578 -543 264 198 79 158 chr1 46549218 46549290 -196115063 + L2 LINE L2 3151 3227 -86 2098 92 4 4 chr1 46549290 46549591 -196114762 - AluSg SINE Alu 0 301 1 264 198 79 158 chr1 46549591 46549694 -196114659 + L2 LINE L2 3227 3313 0 255 318 35 0 chr1 46550258 46550343 -196114010 - MIR SINE MIR -119 143 56 316 182 0 0 chr1 46550395 46550450 -196113903 - MIR SINE MIR -67 141 87 427 253 53 41 chr1 46550769 46550939 -196113414 - L1ME4a LINE L1 -217 5904 5733 398 254 199 11 chr1 46551245 46551426 -196112927 + L2 LINE L2 2693 2907 -407 2355 90 0 3 chr1 46552177 46552477 -196111876 - AluSq SINE Alu -14 299 1 379 373 76 27 chr1 46552562 46552892 -196111461 + L2 LINE L2 2905 3250 -22 669 281 42 26 chr1 46552959 46553151 -196111202 - MER63A DNA MER1_type -15 195 1 216 355 52 19 chr1 46553507 46553662 -196110691 + MIR3 SINE MIR 4 163 -45 1531 151 117 0 chr1 46554304 46554447 -196109906 - AluSx SINE Alu -16 296 171 504 0 0 0 chr1 46554447 46554503 -196109850 + (TA)n Simple_repeat Simple_repeat 2 57 0 1531 151 117 0 chr1 46554503 46554624 -196109729 - AluSx SINE Alu -141 171 1 1137 198 118 56 chr1 46554737 46555110 -196109243 - MSTD LTR MaLR 0 396 1 279 252 78 39 chr1 46555223 46555326 -196109027 - L3 LINE CR1 -59 1518 1412 1927 91 0 0 chr1 46555803 46556055 -196108298 + AluY SINE Alu 56 307 -4 947 266 66 80 chr1 46556425 46556941 -196107412 - MLT1J LTR MaLR -2 509 1 2127 96 0 45 chr1 46556961 46557274 -196107079 + AluSq SINE Alu 1 299 -14 1080 304 26 66 chr1 46557288 46557598 -196106755 + L1MC4a LINE L1 5450 5730 -391 1981 129 0 29 chr1 46557598 46557908 -196106445 - AluJb SINE Alu -11 301 1 1080 304 26 66 chr1 46557908 46558202 -196106151 + L1MC4a LINE L1 5730 6034 -87 24 53 0 0 chr1 46558658 46558696 -196105657 + AT_rich Low_complexity Low_complexity 1 38 0 183 313 60 24 chr1 46558960 46559043 -196105310 + L3 LINE CR1 1321 1406 -171 1601 61 0 0 chr1 46559043 46559239 -196105114 - L1PA7 LINE L1 -13 6141 5946 754 256 6 11 chr1 46559485 46559665 -196104688 - MER97a DNA MER1_type? -715 179 1 428 288 32 8 chr1 46560519 46560644 -196103709 + L2 LINE L2 3145 3272 0 369 261 168 31 chr1 46560946 46561107 -196103246 - MIR SINE MIR -33 229 47 180 0 0 0 chr1 46561111 46561131 -196103222 + (T)n Simple_repeat Simple_repeat 1 20 0 2879 259 35 22 chr1 46561552 46562565 -196101788 - L1ME3A LINE L1 -9 6161 5127 1545 223 82 36 chr1 46562590 46563111 -196101242 - L1ME3A LINE L1 -1233 4913 4359 968 16 0 16 chr1 46563111 46563233 -196101120 - L1PA4 LINE L1 0 6155 6036 1545 223 82 36 chr1 46563233 46563317 -196101036 - L1ME3A LINE L1 -1787 4359 4280 730 162 17 89 chr1 46563356 46563535 -196100818 - L1MB3 LINE L1 -3 6180 6015 447 83 0 0 chr1 46563546 46563615 -196100738 - L1MB7 LINE L1 -2 6172 6103 482 157 74 0 chr1 46563680 46563788 -196100565 - L1MB7 LINE L1 -88 6096 5981 * 5981 205 39 17 chr1 46563786 46565345 -196099008 - L1M4 LINE L1 -1326 5318 3725 4068 148 28 11 chr1 46565380 46566131 -196098222 - L1MA10 LINE L1 -3 6331 5568 319 102 0 17 chr1 46566161 46566220 -196098133 - L1PA10 LINE L1 0 6168 6111 1276 73 0 0 chr1 46566220 46566385 -196097968 - L1P4 LINE L1 -592 5576 5412 * 3153 93 16 2 chr1 46566369 46566808 -196097545 - L1PA10 LINE L1 -42 6126 5682 1388 254 12 51 chr1 46566806 46567061 -196097292 - L1M4 LINE L1 -6140 402 167 * 261 0 0 0 chr1 46567061 46567090 -196097263 + (TG)n Simple_repeat Simple_repeat 2 30 0 1388 254 12 51 chr1 46567090 46567243 -196097110 - L1M4 LINE L1 -6375 167 10 743 312 52 21 chr1 46567237 46567660 -196096693 - L1MEc LINE L1 -1865 4350 3915 * 2397 142 41 53 chr1 46567662 46568099 -196096254 + MSTB1 LTR MaLR 1 432 0 3410 183 31 2 chr1 46568103 46568748 -196095605 + MSTB1-int LTR MaLR 5 668 -983 281 83 0 0 chr1 46568757 46568793 -196095560 + MSTB LTR MaLR 1 36 -390 7932 30 0 0 chr1 46568793 46570514 -196093839 + L1PA3 LINE L1 4439 6155 0 27 0 0 0 chr1 46570526 46570553 -196093800 + AT_rich Low_complexity Low_complexity 1 27 0 2310 152 18 23 chr1 46570553 46570941 -196093412 + MSTB LTR MaLR 41 426 0 4528 171 69 54 chr1 46570949 46571905 -196092448 + MSTB1-int LTR MaLR 682 1651 0 2910 121 7 2 chr1 46571905 46572328 -196092025 + MSTB1 LTR MaLR 1 425 -7 1895 281 90 20 chr1 46572340 46572572 -196091781 - L1MEc LINE L1 -2303 3912 3698 261 0 0 0 chr1 46572572 46572601 -196091752 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1895 281 90 20 chr1 46572601 46573484 -196090869 - L1MEc LINE L1 -2517 3698 2719 671 279 34 49 chr1 46573493 46573959 -196090394 - L1MEc LINE L1 -4064 2332 1874 834 295 57 40 chr1 46574003 46574283 -196090070 - L1MEc LINE L1 -4634 1762 1488 1816 243 70 33 chr1 46574283 46574826 -196089527 - MLT1F1 LTR MaLR 0 567 5 834 295 57 40 chr1 46574826 46575500 -196088853 - L1MEc LINE L1 -4908 1488 792 291 258 31 0 chr1 46576549 46576646 -196087707 + L1ME4a LINE L1 5696 5795 -326 1073 225 123 3 chr1 46576649 46576942 -196087411 + MER58B DNA MER1_type 4 331 -10 401 285 66 56 chr1 46576942 46577261 -196087092 + L1ME4a LINE L1 5789 6110 -11 335 207 69 60 chr1 46577670 46577786 -196086567 - MER69 DNA AcHobo -19 2507 2391 1050 16 0 0 chr1 46577787 46577909 -196086444 + AluYb8 SINE Alu 197 318 0 324 258 15 0 chr1 46578071 46578137 -196086216 - MER69 DNA AcHobo -1159 67 1 11766 143 58 60 chr1 46579514 46582038 -196082315 + L1ME4a LINE L1 20 2570 -3948 11968 170 35 116 chr1 46582039 46582960 -196081393 + L1MA4A LINE L1 5 998 -5851 183 80 0 0 chr1 46582960 46582985 -196081368 + (CTG)n Simple_repeat Simple_repeat 3 27 0 11968 170 35 116 chr1 46582985 46583691 -196080662 + L1MA4A LINE L1 998 1759 -5090 1734 180 143 11 chr1 46583691 46584069 -196080284 + MSTA LTR MaLR 1 428 0 11968 170 35 116 chr1 46584069 46584780 -196079573 + L1MA4A LINE L1 1759 2031 -4818 207 0 0 0 chr1 46584780 46584803 -196079550 + (AATAG)n Simple_repeat Simple_repeat 3 25 0 11968 170 35 116 chr1 46584803 46585602 -196078751 + L1MA4A LINE L1 2031 2892 -3957 2209 121 0 0 chr1 46585602 46585891 -196078462 + AluSx SINE Alu 1 289 -23 376 161 25 0 chr1 46585891 46585972 -196078381 + (TA)n Simple_repeat Simple_repeat 1 83 0 14404 171 39 13 chr1 46585974 46586507 -196077846 + L1MA4A LINE L1 2885 3403 -3602 2858 58 0 0 chr1 46586507 46586869 -196077484 - L1PA5 LINE L1 -1 6153 5792 14404 171 39 13 chr1 46586869 46590230 -196074123 + L1MA4A LINE L1 3403 6886 -119 10834 210 58 16 chr1 46590293 46593468 -196070885 + L1ME4a LINE L1 2574 5894 -719 300 321 54 18 chr1 46594278 46594502 -196069851 - L1MC4a LINE L1 -1899 5909 5678 24 53 0 0 chr1 46594633 46594671 -196069682 + AT_rich Low_complexity Low_complexity 1 38 0 346 301 87 15 chr1 46595160 46595426 -196068927 + L1ME4a LINE L1 5936 6220 -181 1676 290 86 26 chr1 46596081 46597271 -196067082 - L1ME3A LINE L1 -208 5945 4828 230 0 33 0 chr1 46597271 46597301 -196067052 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2094 93 10 7 chr1 46597303 46597592 -196066761 - AluSc SINE Alu -19 290 1 1676 290 86 26 chr1 46597592 46598239 -196066114 - L1ME3A LINE L1 -1325 4828 3999 429 231 12 81 chr1 46598291 46598377 -196065976 - MER112 DNA MER1_type -2 258 188 2357 99 37 6 chr1 46598377 46598729 -196065624 - L1PA10 LINE L1 -5 6163 5801 429 231 12 81 chr1 46598729 46598815 -196065538 - MER112 DNA MER1_type -72 188 98 301 305 43 13 chr1 46598961 46599194 -196065159 - L1ME3A LINE L1 -3526 2603 2364 24813 61 11 2 chr1 46599293 46605397 -196058956 - L1PA4 LINE L1 -1 6154 1 315 299 14 14 chr1 46605400 46605547 -196058806 - L1ME3A LINE L1 -3867 2262 2116 2179 121 0 0 chr1 46605679 46605969 -196058384 - AluY SINE Alu -21 290 1 2348 89 0 0 chr1 46606086 46606400 -196057953 - AluY SINE Alu 0 314 1 634 305 60 26 chr1 46606479 46606830 -196057523 - HAL1 LINE L1 -742 1765 1403 342 305 49 40 chr1 46606943 46607169 -196057184 - L1ME3A LINE L1 -4958 1161 934 2292 90 0 10 chr1 46607171 46607470 -196056883 - AluY SINE Alu -15 296 1 297 0 0 0 chr1 46607786 46607819 -196056534 + (TG)n Simple_repeat Simple_repeat 1 33 0 1656 182 14 3 chr1 46608514 46608805 -196055548 - AluJo SINE Alu -18 294 1 22 70 0 0 chr1 46608812 46608855 -196055498 + AT_rich Low_complexity Low_complexity 1 43 0 301 91 0 23 chr1 46608919 46608963 -196055390 - U6 snRNA snRNA -64 43 1 720 299 27 31 chr1 46609103 46609364 -196054989 + MIR SINE MIR 2 261 -1 7008 102 20 4 chr1 46609539 46611378 -196052975 + L1PA10 LINE L1 4301 6168 0 2593 62 0 0 chr1 46611491 46611799 -196052554 - AluY SINE Alu -3 308 1 241 246 0 0 chr1 46613197 46613254 -196051099 + (ATG)n Simple_repeat Simple_repeat 3 59 0 315 295 10 36 chr1 46613254 46613371 -196050982 + MIR SINE MIR 2 118 -90 855 256 95 46 chr1 46613536 46614015 -196050338 - MLT1K LTR MaLR 0 588 5 840 233 133 16 chr1 46614235 46614628 -196049725 - LTR33 LTR ERVL -8 513 47 309 296 136 40 chr1 46615467 46615643 -196048710 + L2 LINE L2 3077 3269 -3 197 246 66 33 chr1 46615972 46616033 -196048320 + L2 LINE L2 3208 3270 -2 191 267 67 27 chr1 46616100 46616175 -196048178 + MIR SINE MIR 185 262 0 221 324 81 85 chr1 46616182 46616454 -196047899 + L3b LINE CR1 1268 1538 -45 385 160 13 0 chr1 46616670 46616745 -196047608 + L1MB4 LINE L1 6091 6166 -14 234 0 0 0 chr1 46616745 46616771 -196047582 + (CA)n Simple_repeat Simple_repeat 1 26 0 924 239 60 0 chr1 46616779 46616980 -196047373 + MIR SINE MIR 28 240 -22 275 202 172 40 chr1 46617276 46617375 -196046978 - MIR3 SINE MIR -92 116 5 225 0 0 0 chr1 46617433 46617458 -196046895 + (CA)n Simple_repeat Simple_repeat 2 26 0 565 207 75 94 chr1 46617569 46617782 -196046571 - LTR67 LTR ERVL -9 548 340 955 241 40 36 chr1 46618416 46618690 -196045663 - L1MB5 LINE L1 -1 6173 5899 378 286 49 59 chr1 46619109 46619312 -196045041 - MLT1J1 LTR MaLR 0 446 246 474 321 50 14 chr1 46619320 46619541 -196044812 + ERVL LTR ERVL 4648 4876 -888 536 294 62 12 chr1 46619580 46619847 -196044506 + ERVL LTR ERVL 4910 5246 -281 706 305 147 13 chr1 46620221 46620670 -196043683 + LTR33 LTR ERVL 10 518 -3 27 0 0 0 chr1 46621809 46621836 -196042517 + AT_rich Low_complexity Low_complexity 1 27 0 234 0 0 0 chr1 46622471 46622497 -196041856 + (TA)n Simple_repeat Simple_repeat 2 27 0 2173 104 7 0 chr1 46622497 46622794 -196041559 - AluSx SINE Alu -13 299 1 649 291 99 76 chr1 46624478 46625044 -196039309 - MLT1K LTR MaLR -7 581 3 286 265 15 0 chr1 46625049 46625117 -196039236 - MIR SINE MIR -103 105 37 181 382 73 13 chr1 46625752 46625985 -196038368 - L2 LINE L2 -340 2974 2728 181 292 282 10 chr1 46626411 46626716 -196037637 - L2 LINE L2 -621 2693 2306 29 0 0 0 chr1 46627100 46627129 -196037224 + AT_rich Low_complexity Low_complexity 1 29 0 2956 146 58 10 chr1 46627152 46627486 -196036867 - L1MB7 LINE L1 -19 6165 5796 2504 64 0 13 chr1 46627486 46627799 -196036554 - AluY SINE Alu -2 309 1 2956 146 58 10 chr1 46627799 46627985 -196036368 - L1MB7 LINE L1 -388 5796 5620 310 277 176 57 chr1 46628788 46629084 -196035269 + L1M2 LINE L1 777 1107 -5742 23 0 0 0 chr1 46630384 46630407 -196033946 + AT_rich Low_complexity Low_complexity 1 23 0 573 232 216 6 chr1 46630675 46630856 -196033497 - MIR SINE MIR -42 220 2 368 331 24 8 chr1 46630961 46631088 -196033265 + MIR3 SINE MIR 37 165 -43 276 267 0 17 chr1 46631504 46631564 -196032789 - MIR3 SINE MIR -7 201 143 252 333 118 20 chr1 46631729 46631933 -196032420 - L2 LINE L2 -553 2761 2538 1057 241 9 9 chr1 46633015 46633231 -196031122 + MER20 DNA MER1_type 2 217 -2 1420 89 133 0 chr1 46634314 46634517 -196029836 + MER30 DNA MER1_type 1 230 0 346 187 40 0 chr1 46635206 46635281 -196029072 - MIR SINE MIR -82 180 103 1128 269 48 21 chr1 46635562 46635893 -196028460 + MER102b DNA MER1_type 1 340 -1 1676 261 58 23 chr1 46636351 46636696 -196027657 - L2 LINE L2 -17 3296 2965 3058 57 11 0 chr1 46636696 46637047 -196027306 + THE1A LTR MaLR 1 355 0 1676 261 58 23 chr1 46637047 46637525 -196026828 - L2 LINE L2 -348 2965 2444 21 36 0 0 chr1 46638217 46638245 -196026108 + AT_rich Low_complexity Low_complexity 1 28 0 359 322 114 88 chr1 46638265 46638591 -196025762 + L1ME4a LINE L1 150 491 -5628 1947 139 10 7 chr1 46638591 46638892 -196025461 - AluJb SINE Alu -10 302 1 359 322 114 88 chr1 46638892 46638987 -196025366 + L1ME4a LINE L1 491 582 -5537 812 260 164 65 chr1 46638992 46640022 -196024331 + L1ME4a LINE L1 568 1731 -4579 241 269 185 0 chr1 46640282 46640412 -196023941 + L1ME4a LINE L1 2220 2373 -3756 265 271 94 0 chr1 46640439 46640535 -196023818 + L1ME4a LINE L1 2428 2532 -3597 651 288 70 19 chr1 46640538 46640851 -196023502 + L1ME4a LINE L1 4655 4983 -1146 2623 120 31 5 chr1 46640853 46641235 -196023118 - MSTA LTR MaLR -36 392 1 1855 132 86 0 chr1 46641373 46641653 -196022700 + AluSx SINE Alu 1 304 -8 326 226 0 0 chr1 46641754 46641807 -196022546 + L2 LINE L2 3156 3208 -64 194 267 67 67 chr1 46642009 46642159 -196022194 - L2 LINE L2 -3 3310 3161 249 250 0 38 chr1 46642685 46642765 -196021588 + MLT1K LTR MaLR 382 458 -130 2324 278 146 25 chr1 46642918 46644039 -196020314 + L2 LINE L2 2054 3307 -6 5627 252 58 25 chr1 46644159 46645593 -196018760 + L1ME3A LINE L1 3338 4888 -1282 1633 211 133 43 chr1 46645593 46646104 -196018249 - MER34B LTR ERV1 -4 561 5 5627 252 58 25 chr1 46646104 46647144 -196017209 + L1ME3A LINE L1 4888 5893 -277 992 191 32 9 chr1 46647146 46647366 -196016987 + L1ME3A LINE L1 5936 6160 -10 532 244 112 112 chr1 46647578 46648267 -196016086 + L1ME4a LINE L1 5407 6100 -4 2167 128 40 77 chr1 46651295 46651700 -196012653 + MLT1B LTR MaLR 1 390 0 1747 177 52 35 chr1 46651757 46651962 -196012391 - MLT1A2 LTR MaLR 0 374 159 1802 151 4 4 chr1 46651962 46652241 -196012112 - AluSx SINE Alu -1 311 33 1747 177 52 35 chr1 46652241 46652403 -196011950 - MLT1A2 LTR MaLR -215 159 1 227 250 0 56 chr1 46652425 46652497 -196011856 - HsTC2 DNA Tc2 -1830 68 1 298 239 109 0 chr1 46654325 46654417 -196009936 + HAL1 LINE L1 842 943 -1564 352 155 4 1 chr1 46654488 46654733 -196009620 + AluJo SINE Alu 1 281 -21 429 262 199 22 chr1 46654785 46655052 -196009301 + HAL1 LINE L1 1117 1430 -1077 341 293 48 24 chr1 46655362 46655529 -196008824 + HAL1 LINE L1 1427 1597 -910 426 278 108 24 chr1 46655537 46655833 -196008520 - MLT1L LTR MaLR -93 522 169 499 290 37 33 chr1 46655952 46656166 -196008187 + HAL1 LINE L1 1595 1809 -698 226 291 85 57 chr1 46657664 46657805 -196006548 + MIR SINE MIR 5 140 -68 2763 159 33 27 chr1 46657832 46658346 -196006007 + Charlie1b DNA MER1_type 7 523 0 238 227 0 93 chr1 46659247 46659344 -196005009 + L1MC4 LINE L1 6616 6703 -1339 183 129 0 0 chr1 46659345 46659376 -196004977 + (TG)n Simple_repeat Simple_repeat 2 32 0 331 190 209 44 chr1 46659522 46659680 -196004673 - L2 LINE L2 -252 3061 2878 866 233 17 0 chr1 46659817 46659989 -196004364 - MER5A DNA MER1_type -14 175 1 2234 105 3 10 chr1 46661320 46661626 -196002727 + AluSx SINE Alu 5 308 -4 21 57 0 0 chr1 46661632 46661667 -196002686 + AT_rich Low_complexity Low_complexity 1 35 0 321 167 125 10 chr1 46662040 46662136 -196002217 - MER5B DNA MER1_type -66 112 6 37 0 0 0 chr1 46662567 46662604 -196001749 + AT_rich Low_complexity Low_complexity 1 37 0 336 272 19 39 chr1 46663045 46663148 -196001205 + L2 LINE L2 3205 3305 -8 632 267 205 0 chr1 46663564 46663774 -196000579 + MIR SINE MIR 4 256 -6 945 268 52 98 chr1 46664181 46664722 -195999631 + MLT1K LTR MaLR 71 586 -2 262 275 44 0 chr1 46665398 46665489 -195998864 + L1ME4a LINE L1 6025 6119 -2 2438 104 0 0 chr1 46665496 46665803 -195998550 + AluSc SINE Alu 1 307 -2 1226 231 71 91 chr1 46667376 46667532 -195996821 + MLT1G LTR MaLR 2 160 -430 2700 172 64 19 chr1 46667532 46668015 -195996338 + MLT1D LTR MaLR 1 505 0 1226 231 71 91 chr1 46668015 46668283 -195996070 + MLT1G LTR MaLR 160 409 -181 1595 183 21 7 chr1 46668283 46668572 -195995781 - AluJo SINE Alu -17 295 3 1226 231 71 91 chr1 46668572 46668733 -195995620 + MLT1G LTR MaLR 409 572 -18 950 263 106 68 chr1 46669083 46669926 -195994427 - L1MEd LINE L1 -4444 1685 797 2164 158 124 16 chr1 46669926 46670312 -195994041 - MSTA LTR MaLR 0 428 1 950 263 106 68 chr1 46670312 46670504 -195993849 - L1MEd LINE L1 -5332 797 614 27174 23 2 0 chr1 46670522 46674320 -195990033 - L1PA3 LINE L1 0 6155 2353 5405 33 2 0 chr1 46674320 46674962 -195989391 + L1PA3 LINE L1 1707 2349 -3797 393 345 50 0 chr1 46675101 46675301 -195989052 + L2 LINE L2 2967 3176 -137 5979 151 39 28 chr1 46675312 46676632 -195987721 - L1MA8 LINE L1 -3 6288 4984 2096 108 108 17 chr1 46676632 46676976 -195987377 + THE1C LTR MaLR 1 375 0 5979 151 39 28 chr1 46676976 46677300 -195987053 - L1MA8 LINE L1 -1307 4984 4631 669 73 0 31 chr1 46677300 46677396 -195986957 - L1PA8 LINE L1 -1 6171 6079 5979 151 39 28 chr1 46677396 46677500 -195986853 - L1MA8 LINE L1 -1660 4631 4530 489 257 44 7 chr1 46677500 46677636 -195986717 + L2 LINE L2 3173 3313 0 2445 70 0 0 chr1 46677946 46678247 -195986106 + AluY SINE Alu 1 301 -10 285 299 36 60 chr1 46678508 46678675 -195985678 - MIR3 SINE MIR -18 190 28 1702 149 61 38 chr1 46679032 46679374 -195984979 + MLT1A1 LTR MaLR 14 363 -2 507 302 150 43 chr1 46679387 46679613 -195984740 + L2 LINE L2 2781 2981 -332 249 108 0 0 chr1 46679613 46679650 -195984703 + (CAAT)n Simple_repeat Simple_repeat 2 38 0 507 302 150 43 chr1 46679650 46679870 -195984483 + L2 LINE L2 2981 3273 -40 1435 181 32 32 chr1 46680412 46680694 -195983659 + AluJo SINE Alu 1 282 -30 1712 131 91 13 chr1 46681473 46681771 -195982582 + MER1B DNA MER1_type 19 339 0 284 203 119 0 chr1 46681816 46681875 -195982478 - L2 LINE L2 -5 3308 3243 351 214 32 117 chr1 46681936 46682090 -195982263 - L3 LINE CR1 -876 701 561 259 275 69 46 chr1 46683033 46683164 -195981189 - MIR SINE MIR -70 192 59 2701 220 59 5 chr1 46683967 46684631 -195979722 - L1MB7 LINE L1 -1 6183 5484 350 277 43 0 chr1 46685201 46685295 -195979058 + MIR SINE MIR 53 150 -112 652 235 114 0 chr1 46685466 46685632 -195978721 - MER5A DNA MER1_type 0 189 5 379 236 79 0 chr1 46685929 46686018 -195978335 + L2 LINE L2 3218 3313 0 1868 156 68 27 chr1 46686039 46686405 -195977948 - MLT1B LTR MaLR -1 389 9 192 77 0 0 chr1 46687239 46687265 -195977088 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 1021 183 66 6 chr1 46687667 46688037 -195976316 - MLT1C LTR MaLR 0 467 56 200 263 88 62 chr1 46689195 46689275 -195975078 - L2 LINE L2 0 3272 3191 1123 253 16 68 chr1 46689341 46689724 -195974629 - LTR16A LTR ERVL -5 445 83 604 283 146 52 chr1 46689835 46690160 -195974193 - L2 LINE L2 -41 3231 2863 324 0 0 0 chr1 46690160 46690196 -195974157 + (TG)n Simple_repeat Simple_repeat 2 37 0 604 283 146 52 chr1 46690196 46690255 -195974098 - L2 LINE L2 -409 2863 2811 1202 207 123 133 chr1 46690972 46691107 -195973246 + MLT1F1 LTR MaLR 62 197 -370 189 74 0 0 chr1 46691107 46691134 -195973219 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 1202 207 123 133 chr1 46691134 46691509 -195972844 + MLT1F1 LTR MaLR 197 567 0 197 369 64 37 chr1 46691511 46691608 -195972745 + L2 LINE L2 2830 2923 -349 306 0 0 0 chr1 46691608 46691642 -195972711 + (TG)n Simple_repeat Simple_repeat 1 34 0 197 369 64 37 chr1 46691642 46691731 -195972622 + L2 LINE L2 2923 3021 -251 186 214 48 0 chr1 46691881 46691923 -195972430 - L2 LINE L2 -10 3262 3219 543 299 12 117 chr1 46691965 46692306 -195972047 + L2 LINE L2 2960 3264 -8 208 318 34 0 chr1 46692446 46692534 -195971819 - L2 LINE L2 -213 3059 2969 1590 172 31 89 chr1 46692575 46692958 -195971395 - MLT1A1 LTR MaLR 0 365 5 217 364 42 14 chr1 46693241 46693384 -195970969 - L2 LINE L2 -437 2877 2731 1017 177 126 59 chr1 46693693 46694001 -195970352 - MLT1C LTR MaLR -51 416 93 26253 157 24 42 chr1 46694001 46697908 -195966445 - L1PA10 LINE L1 -23 6145 2403 2258 91 0 26 chr1 46697908 46698215 -195966138 + AluY SINE Alu 1 299 -12 26253 157 24 42 chr1 46698215 46700576 -195963777 - L1PA10 LINE L1 -3765 2403 1 572 179 41 32 chr1 46700591 46700714 -195963639 - MLT1C LTR MaLR -343 124 1 1991 34 0 29 chr1 46701003 46701241 -195963112 - L1PA5 LINE L1 -3 6151 5921 731 24 0 0 chr1 46701241 46701323 -195963030 + L1PA5 LINE L1 5816 5897 -258 892 193 9 76 chr1 46701323 46701377 -195962976 + MER20 DNA MER1_type 12 68 -151 2530 59 0 0 chr1 46701377 46701682 -195962671 + AluY SINE Alu 1 305 -6 892 193 9 76 chr1 46701682 46701850 -195962503 + MER20 DNA MER1_type 68 219 0 1168 218 25 78 chr1 46703283 46703828 -195960525 - MLT1G1 LTR MaLR -4 538 1 1083 239 28 0 chr1 46703975 46704222 -195960131 - LTR16A1 LTR ERVL -17 440 187 1822 355 41 18 chr1 46704889 46705972 -195958381 - HERVL LTR ERVL -796 4858 3751 1071 319 43 11 chr1 46706127 46706572 -195957781 - HERVL LTR ERVL -2220 3544 3086 225 296 15 5 chr1 46706578 46706655 -195957698 - MIR SINE MIR -63 145 71 207 263 145 13 chr1 46707181 46707257 -195957096 - MIR SINE MIR -143 119 34 386 262 20 20 chr1 46709484 46709633 -195954720 + MIR SINE MIR 94 242 -20 574 273 39 47 chr1 46709752 46710008 -195954345 - MIR SINE MIR 0 262 9 200 210 0 16 chr1 46710872 46710934 -195953419 + CT-rich Low_complexity Low_complexity 3 63 0 237 108 0 0 chr1 46711016 46711053 -195953300 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 873 244 32 20 chr1 46711176 46711426 -195952927 - MIR SINE MIR -1 261 9 294 320 0 10 chr1 46711486 46711589 -195952764 - L2 LINE L2 -239 3033 2932 270 0 0 0 chr1 46712235 46712265 -195952088 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 2243 118 50 19 chr1 46712766 46713130 -195951223 + THE1C LTR MaLR 1 375 0 699 269 31 41 chr1 46713136 46713426 -195950927 - L1ME3A LINE L1 -38 6132 5846 605 185 41 20 chr1 46713869 46714015 -195950338 - L1MC2 LINE L1 0 6344 6196 242 29 29 0 chr1 46714343 46714378 -195949975 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2747 50 6 0 chr1 46714378 46714700 -195949653 - LTR17 LTR ERV1 -456 324 1 9345 48 11 3 chr1 46714700 46715809 -195948544 - HERV17 LTR ERV1 0 8626 7509 * 18789 48 12 1 chr1 46715801 46718040 -195946313 - HERV17 LTR ERV1 -2607 6019 3757 1923 165 23 43 chr1 46718178 46718309 -195946044 + MER31A LTR ERV1 51 183 -302 1565 180 113 0 chr1 46718309 46718637 -195945716 - MLT1A1 LTR MaLR 0 365 1 1923 165 23 43 chr1 46718637 46718948 -195945405 + MER31A LTR ERV1 183 484 -1 2232 112 0 13 chr1 46719066 46719379 -195944974 + AluSc SINE Alu 1 309 0 605 239 0 0 chr1 46719710 46719848 -195944505 - MIR SINE MIR -93 169 32 21 0 0 0 chr1 46719992 46720013 -195944340 + AT_rich Low_complexity Low_complexity 1 21 0 842 267 17 8 chr1 46721564 46721804 -195942549 + MIR SINE MIR 12 253 -9 289 132 0 5 chr1 46721806 46721859 -195942494 + AluSp SINE Alu 123 170 -133 1058 143 0 0 chr1 46721859 46722006 -195942347 + AluSg/x SINE Alu 141 287 -25 39 0 0 0 chr1 46722009 46722048 -195942305 + AT_rich Low_complexity Low_complexity 1 39 0 461 133 61 0 chr1 46722056 46722212 -195942141 + (TA)n Simple_repeat Simple_repeat 2 170 -6 207 69 0 0 chr1 46722212 46722241 -195942112 + (CA)n Simple_repeat Simple_repeat 2 30 0 461 133 61 0 chr1 46722241 46722249 -195942104 + (TA)n Simple_repeat Simple_repeat 170 176 0 236 296 10 31 chr1 46722249 46722347 -195942006 - MIR SINE MIR -136 126 31 1274 145 4 40 chr1 46722347 46722574 -195941779 - MER20 DNA MER1_type 0 219 1 1983 157 0 10 chr1 46722790 46723102 -195941251 - AluJb SINE Alu -3 309 1 482 205 33 33 chr1 46725222 46725344 -195939009 + MIR SINE MIR 22 143 -119 460 132 99 0 chr1 46725382 46725473 -195938880 + L1PA16 LINE L1 6066 6165 -1 250 321 147 32 chr1 46725501 46725719 -195938634 + L2 LINE L2 3003 3245 -27 * 1051 219 12 12 chr1 46725698 46725949 -195938404 - MIR SINE MIR -6 256 6 196 132 40 26 chr1 46726719 46726795 -195937558 + (TG)n Simple_repeat Simple_repeat 1 77 0 495 87 69 29 chr1 46726809 46726982 -195937371 + (TG)n Simple_repeat Simple_repeat 1 180 0 269 177 79 0 chr1 46726996 46727252 -195937101 + (TG)n Simple_repeat Simple_repeat 1 276 0 2263 64 19 55 chr1 46727588 46727899 -195936454 + AluY SINE Alu 1 300 -11 885 214 40 0 chr1 46727938 46728111 -195936242 + MER3 DNA MER1_type 29 208 -1 200 185 169 15 chr1 46728425 46728490 -195935863 + MIR SINE MIR 38 112 -96 4544 223 55 19 chr1 46728490 46729195 -195935158 - MER69B DNA AcHobo -1300 1226 459 2445 97 3 0 chr1 46729195 46729504 -195934849 - AluSp SINE Alu -1 312 3 4544 223 55 19 chr1 46729504 46729976 -195934377 - MER69B DNA AcHobo -2067 459 6 280 296 67 15 chr1 46729976 46730111 -195934242 + MIR SINE MIR 102 243 -19 481 225 7 14 chr1 46730117 46730259 -195934094 + GA-rich Low_complexity Low_complexity 2 142 0 1894 147 20 0 chr1 46730260 46730552 -195933801 - AluSx SINE Alu -14 298 1 354 309 11 0 chr1 46731234 46731328 -195933025 + MIR3 SINE MIR 108 202 -6 2037 135 0 10 chr1 46731675 46731964 -195932389 + AluSx SINE Alu 6 291 -21 330 318 66 25 chr1 46734506 46734704 -195929649 + MIR SINE MIR 13 218 -44 756 274 12 39 chr1 46735521 46735593 -195928760 + MIR SINE MIR 15 87 -175 1639 143 75 11 chr1 46735593 46735872 -195928481 + AluJo SINE Alu 1 297 -15 756 274 12 39 chr1 46735872 46736054 -195928299 + MIR SINE MIR 87 262 0 696 173 0 23 chr1 46737057 46737278 -195927075 + GA-rich Low_complexity Low_complexity 1 216 0 16671 67 15 1 chr1 46738929 46741049 -195923304 - HERV17 LTR ERV1 -4910 3716 1566 2559 140 22 11 chr1 46741202 46741646 -195922707 - L1MB3 LINE L1 -2 6181 5733 1624 266 107 32 chr1 46742098 46742299 -195922054 - L1MC4a LINE L1 -1634 6174 5989 2450 64 3 26 chr1 46742299 46742610 -195921743 + AluY SINE Alu 1 304 -7 1624 266 107 32 chr1 46742610 46743133 -195921220 - L1MC4a LINE L1 -1819 5989 5397 269 257 14 0 chr1 46743313 46743387 -195920966 - L2 LINE L2 -1085 2229 2155 30 0 0 0 chr1 46743484 46743514 -195920839 + AT_rich Low_complexity Low_complexity 1 30 0 334 242 20 10 chr1 46743602 46743701 -195920652 + MER5A DNA MER1_type 9 108 -81 1584 288 125 17 chr1 46743754 46744562 -195919791 + L2 LINE L2 1165 2059 -1255 248 221 13 0 chr1 46744580 46744657 -195919696 + CT-rich Low_complexity Low_complexity 1 78 0 245 189 11 56 chr1 46745546 46745636 -195918717 + A-rich Low_complexity Low_complexity 2 87 0 231 333 11 0 chr1 46745694 46745784 -195918569 + MIR3 SINE MIR 114 204 -4 24 32 0 0 chr1 46746307 46746338 -195918015 + AT_rich Low_complexity Low_complexity 1 31 0 555 340 48 21 chr1 46747088 46747465 -195916888 - L2 LINE L2 -7 3306 2920 395 243 43 29 chr1 46747672 46747812 -195916541 - MLT1K LTR MaLR 0 588 447 1052 166 28 0 chr1 46747860 46748041 -195916312 - MER33 DNA MER1_type -138 186 1 236 351 47 41 chr1 46748092 46748263 -195916090 - MLT1K LTR MaLR -307 281 110 404 210 118 8 chr1 46748585 46748704 -195915649 - MER94 DNA DNA 0 134 3 260 37 74 0 chr1 46749729 46749783 -195914570 + (TA)n Simple_repeat Simple_repeat 1 58 0 185 359 0 0 chr1 46750272 46750375 -195913978 + MIR SINE MIR 157 259 -3 22 0 0 0 chr1 46750383 46750405 -195913948 + AT_rich Low_complexity Low_complexity 1 22 0 320 297 8 55 chr1 46751615 46751743 -195912610 + L1MD3 LINE L1 818 939 -5484 * 4952 241 27 12 chr1 46751739 46753182 -195911171 + L1MD3 LINE L1 2878 4306 -2635 210 37 0 0 chr1 46753182 46753209 -195911144 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4952 241 27 12 chr1 46753209 46753229 -195911124 + L1MD3 LINE L1 4306 4324 -2617 * 7584 217 100 53 chr1 46753217 46756570 -195907783 + L1MD3 LINE L1 4612 8289 -501 420 136 0 15 chr1 46756570 46756636 -195907717 - AluJ/FLAM SINE Alu -242 70 6 7584 217 100 53 chr1 46756636 46756989 -195907364 + L1MD3 LINE L1 8289 8624 -166 625 201 27 13 chr1 46756991 46757140 -195907213 + L1MD2 LINE L1 6194 6344 -15 2358 93 0 3 chr1 46757424 46757725 -195906628 - AluSg SINE Alu -10 300 1 198 214 0 0 chr1 46758846 46758888 -195905465 + L2 LINE L2 3251 3292 -21 398 317 45 27 chr1 46759058 46759279 -195905074 + L3 LINE CR1 693 917 -660 1047 264 84 12 chr1 46759291 46759728 -195904625 - MLT1J LTR MaLR 0 511 9 812 192 96 62 chr1 46759824 46759867 -195904486 - MER58C DNA MER1_type -2205 215 175 2497 129 45 26 chr1 46759867 46760293 -195904060 + Tigger2a DNA MER2_type 1 434 0 812 192 96 62 chr1 46760293 46760457 -195903896 - MER58C DNA MER1_type -2245 175 1 458 308 88 26 chr1 46760467 46760772 -195903581 + L3 LINE CR1 1069 1392 -185 612 239 53 23 chr1 46760777 46760977 -195903376 - MIR SINE MIR -12 250 44 925 205 112 8 chr1 46761115 46761542 -195902811 - MLT1D LTR MaLR -5 500 1 180 161 0 0 chr1 46761544 46761575 -195902778 + L3 LINE CR1 1451 1481 -96 2745 132 8 37 chr1 46761882 46762366 -195901987 - L1MA7 LINE L1 0 6291 5822 321 286 118 44 chr1 46762383 46762746 -195901607 - L1M4 LINE L1 -1161 4985 4596 340 70 18 18 chr1 46762834 46762891 -195901462 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 489 266 80 87 chr1 46763024 46763729 -195900624 - HAL1b LINE L1 -548 1751 1043 238 50 50 0 chr1 46763729 46763769 -195900584 + (TG)n Simple_repeat Simple_repeat 1 42 0 489 266 80 87 chr1 46763769 46763780 -195900573 - HAL1b LINE L1 -1256 1043 334 2828 88 3 3 chr1 46764054 46764418 -195899935 - THE1B LTR MaLR 0 364 1 181 283 17 17 chr1 46764795 46764855 -195899498 + L3b LINE CR1 1306 1365 -218 256 175 32 0 chr1 46766531 46766594 -195897759 + (TA)n Simple_repeat Simple_repeat 2 66 0 234 0 0 0 chr1 46767543 46767569 -195896784 + (CGG)n Simple_repeat Simple_repeat 2 27 0 1521 194 17 17 chr1 46771980 46772273 -195892080 + AluJo SINE Alu 1 293 -19 296 140 18 0 chr1 46773597 46773654 -195890699 - L1ME3 LINE L1 -212 6019 5962 837 258 40 101 chr1 46773920 46774525 -195889828 - L1ME3 LINE L1 -305 5926 5359 2306 271 123 30 chr1 46774781 46776334 -195888019 - L1ME3 LINE L1 -2138 4077 2381 524 271 76 65 chr1 46776347 46776779 -195887574 - L1ME3 LINE L1 -4666 1730 1294 248 274 85 24 chr1 46776859 46777023 -195887330 - L1ME3 LINE L1 -5943 262 89 216 0 0 0 chr1 46777564 46777588 -195886765 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 227 227 15 0 chr1 46778764 46778830 -195885523 + GA-rich Low_complexity Low_complexity 1 67 0 2249 189 32 30 chr1 46778939 46779324 -195885029 - L1ME1 LINE L1 0 6166 5778 2243 106 0 3 chr1 46779324 46779617 -195884736 - AluSg SINE Alu -18 292 1 2249 189 32 30 chr1 46779617 46779724 -195884629 - L1ME1 LINE L1 -388 5778 5673 731 179 159 0 chr1 46779949 46780100 -195884253 + MIR SINE MIR 1 175 -87 446 229 37 0 chr1 46781187 46781296 -195883057 - MER5B DNA MER1_type -64 114 2 214 242 40 14 chr1 46781296 46781386 -195882967 - MIR SINE MIR -67 141 46 2015 153 16 0 chr1 46781448 46781755 -195882598 + AluSx SINE Alu 1 312 0 345 296 15 30 chr1 46782169 46782304 -195882049 - MIR SINE MIR -21 241 109 216 234 0 0 chr1 46782481 46782528 -195881825 + L2 LINE L2 3215 3261 -11 183 100 0 0 chr1 46782535 46782565 -195881788 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 618 309 40 77 chr1 46782931 46783401 -195880952 + LTR16A1 LTR ERVL 2 454 -3 518 261 43 51 chr1 46783637 46783871 -195880482 - L2 LINE L2 -1 3312 3081 447 324 88 41 chr1 46783937 46784690 -195879663 + L2 LINE L2 1879 2666 -648 547 270 20 0 chr1 46785082 46785234 -195879119 + MER97b DNA MER1_type? 29 183 -870 297 343 56 0 chr1 46785308 46785451 -195878902 - MIR SINE MIR -3 259 109 441 232 119 20 chr1 46785747 46785898 -195878455 + MIR SINE MIR 32 197 -65 1708 111 0 4 chr1 46785997 46786250 -195878103 + AluSq SINE Alu 60 313 0 456 19 0 0 chr1 46787664 46787717 -195876636 + (TC)n Simple_repeat Simple_repeat 1 53 0 221 179 0 18 chr1 46787909 46787965 -195876388 + (TAA)n Simple_repeat Simple_repeat 1 55 0 1005 212 9 23 chr1 46787980 46788197 -195876156 - MIR SINE MIR -29 233 20 500 276 81 67 chr1 46788541 46789201 -195875152 - L2 LINE L2 -72 3200 2533 205 195 24 0 chr1 46790764 46790805 -195873548 + CT-rich Low_complexity Low_complexity 4 45 0 2624 182 32 49 chr1 46791540 46791988 -195872365 + L1ME2 LINE L1 5579 6016 -148 2817 109 35 9 chr1 46791988 46792411 -195871942 + MER57B LTR ERV1 1 434 0 2624 182 32 49 chr1 46792411 46792549 -195871804 + L1ME2 LINE L1 6016 6155 -9 842 289 25 0 chr1 46793469 46793704 -195870649 - MIR SINE MIR 0 262 22 424 323 31 0 chr1 46793976 46794106 -195870247 - L2 LINE L2 -3 3269 3136 23 0 0 0 chr1 46794566 46794589 -195869764 + AT_rich Low_complexity Low_complexity 1 23 0 879 153 23 28 chr1 46794681 46794857 -195869496 - L1MA10 LINE L1 -1 6333 6159 235 365 10 10 chr1 46795471 46795575 -195868778 + MIR SINE MIR 44 147 -61 500 300 30 34 chr1 46795583 46795816 -195868537 - MIR SINE MIR -13 249 19 212 280 196 30 chr1 46796373 46796709 -195867644 - L2 LINE L2 -417 2897 2506 569 168 8 64 chr1 46797067 46797192 -195867161 + MER58 DNA MER1_type 3 120 -2300 247 158 0 0 chr1 46797204 46797242 -195867111 + MER58 DNA MER1_type 2383 2420 0 184 313 31 0 chr1 46799542 46799606 -195864747 + MIR SINE MIR 73 138 -124 2203 105 3 10 chr1 46799702 46799996 -195864357 + AluSx SINE Alu 1 292 -20 524 188 114 27 chr1 46800771 46800920 -195863433 - L1MD1 LINE L1 -145 6097 5936 321 276 79 24 chr1 46801187 46801314 -195863039 + MIR SINE MIR 107 240 -22 230 266 16 0 chr1 46801573 46801637 -195862716 + MIR SINE MIR 72 136 -72 272 185 62 37 chr1 46801963 46802044 -195862309 + L2 LINE L2 3011 3093 -179 358 258 165 0 chr1 46802418 46802515 -195861838 - MER3 DNA MER1_type -3 206 94 1513 184 72 26 chr1 46802677 46803024 -195861329 + MLT1C LTR MaLR 6 368 -99 1690 61 0 26 chr1 46803929 46804157 -195860196 - L1PA4 LINE L1 -5 6150 5929 312 351 23 46 chr1 46804707 46804881 -195859472 - MIR3 SINE MIR -22 186 17 1200 271 57 18 chr1 46805146 46805529 -195858824 + L2 LINE L2 2916 3313 0 411 21 0 0 chr1 46805584 46805632 -195858721 + (CA)n Simple_repeat Simple_repeat 2 49 0 2120 116 10 0 chr1 46805958 46806259 -195858094 + AluSx SINE Alu 1 304 -8 348 336 36 14 chr1 46808900 46809040 -195855313 - MIR3 SINE MIR -9 199 57 417 252 1 1 chr1 46809044 46809151 -195855202 - L1ME2 LINE L1 -14 6150 6046 206 314 0 14 chr1 46810228 46810298 -195854055 + G-rich Low_complexity Low_complexity 3 71 0 * 208 237 0 0 chr1 46810261 46810299 -195854054 + polypurine Low_complexity Low_complexity 3 40 0 308 366 113 11 chr1 46812734 46812920 -195851433 - L3 LINE CR1 -3 1574 1370 376 306 104 17 chr1 46812925 46813098 -195851255 + L1ME LINE L1 5333 5520 -601 265 240 13 40 chr1 46813107 46813182 -195851171 + L1ME LINE L1 5562 5634 -487 262 333 14 0 chr1 46813202 46813274 -195851079 - MIR SINE MIR -188 74 2 320 304 101 29 chr1 46813462 46813600 -195850753 - L2 LINE L2 -3 3310 3163 267 303 204 0 chr1 46813613 46813775 -195850578 - MIR SINE MIR -12 250 56 403 286 221 60 chr1 46813792 46814212 -195850141 + L2 LINE L2 2826 3313 0 245 179 26 64 chr1 46814240 46814318 -195850035 + Charlie7 DNA MER1_type 2 76 -2536 285 224 51 31 chr1 46814396 46814494 -195849859 + Charlie7 DNA MER1_type 2513 2612 0 306 0 0 0 chr1 46814765 46814799 -195849554 + (GA)n Simple_repeat Simple_repeat 1 34 0 345 307 111 18 chr1 46814967 46815138 -195849215 + MIR SINE MIR 9 191 -63 536 229 64 25 chr1 46816539 46816696 -195847657 + Charlie8 DNA MER1_type 31 193 -2224 961 129 0 7 chr1 46816741 46816881 -195847472 + AluSc SINE Alu 143 281 -28 357 130 19 0 chr1 46816984 46817038 -195847315 + Charlie8 DNA MER1_type 1371 1425 -992 1995 29 0 0 chr1 46817222 46817467 -195846886 - L1HS LINE L1 -796 5350 5106 * 7232 2 1 0 chr1 46817466 46818258 -195846095 + L1HS LINE L1 5363 6155 0 336 148 0 0 chr1 46818617 46818678 -195845675 + (GA)n Simple_repeat Simple_repeat 1 61 0 2051 113 49 40 chr1 46819155 46819525 -195844828 + THE1C LTR MaLR 1 373 -2 219 258 273 15 chr1 46820715 46820847 -195843506 - MIR SINE MIR 0 262 97 2248 108 0 0 chr1 46821184 46821490 -195842863 + AluSc SINE Alu 3 308 -1 642 297 102 23 chr1 46821532 46821875 -195842478 - L2 LINE L2 0 3313 2944 215 343 50 43 chr1 46822274 46822414 -195841939 + MIR3 SINE MIR 51 191 -17 883 217 22 0 chr1 46822574 46822758 -195841595 + MER5A DNA MER1_type 1 188 -1 2098 103 14 0 chr1 46822793 46823084 -195841269 + AluSg SINE Alu 1 295 -15 244 355 46 0 chr1 46825475 46825627 -195838726 - L1ME LINE L1 -327 5794 5636 265 382 41 0 chr1 46825933 46826056 -195838297 - L2 LINE L2 -1 3271 3144 249 122 85 37 chr1 46826258 46826340 -195838013 + L1ME4a LINE L1 6036 6121 0 1995 109 26 10 chr1 46827297 46827601 -195836752 + AluSc SINE Alu 1 309 0 2471 34 3 0 chr1 46827601 46827892 -195836461 + L1PA5 LINE L1 5863 6154 0 401 147 101 92 chr1 46828624 46828733 -195835620 + MER103 DNA DNA 55 164 -2 297 297 77 46 chr1 46828802 46829048 -195835305 + L2 LINE L2 2754 2998 -274 1315 229 99 50 chr1 46829772 46830247 -195834106 + MLT1H LTR MaLR 52 549 0 1186 107 6 0 chr1 46831184 46831362 -195832991 + AluY SINE Alu 131 309 -2 1738 170 3 3 chr1 46831806 46832106 -195832247 - AluJo SINE Alu -12 300 1 259 215 315 32 chr1 46832234 46832361 -195831992 + MIR SINE MIR 99 259 -3 21 36 0 0 chr1 46833631 46833659 -195830694 + AT_rich Low_complexity Low_complexity 1 28 0 332 286 79 40 chr1 46833986 46834112 -195830241 - MIR SINE MIR -70 192 62 2090 118 0 10 chr1 46834645 46834950 -195829403 + AluSx SINE Alu 1 302 -10 228 276 41 41 chr1 46835098 46835196 -195829157 + MIR SINE MIR 86 183 -79 294 303 83 14 chr1 46835985 46836130 -195828223 + MIR SINE MIR 3 157 -105 200 176 0 0 chr1 46837024 46837058 -195827295 + GA-rich Low_complexity Low_complexity 3 36 0 825 231 62 37 chr1 46837614 46837857 -195826496 - MIR SINE MIR -1 261 13 787 285 25 8 chr1 46838444 46838679 -195825674 - MIR SINE MIR -12 250 12 509 283 173 18 chr1 46841028 46841254 -195823099 - MIR SINE MIR 0 262 2 199 211 0 0 chr1 46841497 46841535 -195822818 - MIR SINE MIR -62 146 109 930 185 12 0 chr1 46841880 46842042 -195822311 + FRAM SINE Alu 1 164 -2 288 330 85 0 chr1 46842143 46842249 -195822104 + L3 LINE CR1 1033 1147 -430 809 109 0 0 chr1 46842608 46842755 -195821598 - AluSg/x SINE Alu 0 320 174 231 244 268 0 chr1 46842756 46842838 -195821515 - MIR SINE MIR -56 152 49 409 284 110 13 chr1 46843957 46844112 -195820241 - MIR SINE MIR -58 204 35 446 278 172 57 chr1 46844447 46844606 -195819747 - L2 LINE L2 -3 3310 3171 186 43 0 0 chr1 46844606 46844629 -195819724 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 446 278 172 57 chr1 46844629 46844782 -195819571 - L2 LINE L2 -142 3171 3037 1944 149 13 0 chr1 46844782 46845090 -195819263 + AluJo SINE Alu 1 312 0 446 278 172 57 chr1 46845090 46845276 -195819077 - L2 LINE L2 -276 3037 2751 883 135 0 7 chr1 46845346 46845494 -195818859 - AluSg/x SINE Alu 0 310 164 260 250 0 15 chr1 46845667 46845735 -195818618 - MIR SINE MIR -183 79 13 1843 123 30 0 chr1 46845994 46846263 -195818090 + AluSx SINE Alu 1 277 -35 252 0 0 0 chr1 46846269 46846297 -195818056 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 432 341 77 74 chr1 46846412 46846735 -195817618 + L2 LINE L2 2939 3262 -10 289 268 12 12 chr1 46847502 46847584 -195816769 + MIR SINE MIR 20 101 -161 560 275 125 40 chr1 46847629 46848140 -195816213 + L1M4 LINE L1 5211 5770 -401 352 248 162 17 chr1 46848602 46848719 -195815634 - MIR SINE MIR -107 155 22 245 147 29 44 chr1 46848776 46848844 -195815509 - L1MC5 LINE L1 -48 7913 7847 436 248 241 12 chr1 46848879 46849298 -195815055 - L1M4 LINE L1 -2848 3298 2784 305 287 140 51 chr1 46849313 46849470 -195814883 - L1M4 LINE L1 -3340 2806 2636 817 175 79 69 chr1 46849470 46849659 -195814694 - MER58A DNA MER1_type 0 224 34 29 61 0 0 chr1 46849670 46849703 -195814650 + AT_rich Low_complexity Low_complexity 1 33 0 2286 187 118 80 chr1 46850114 46850624 -195813729 + L1MD3 LINE L1 6503 6992 -1003 225 65 0 0 chr1 46850624 46850655 -195813698 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2286 187 118 80 chr1 46850655 46850702 -195813651 + L1MD3 LINE L1 6992 7036 -959 529 165 19 29 chr1 46850702 46850805 -195813548 + MLT1F1 LTR MaLR 37 138 -429 2286 187 118 80 chr1 46850805 46851235 -195813118 + L1MD3 LINE L1 7036 7858 -137 526 176 0 0 chr1 46851277 46851362 -195812991 + AluJ/FRAM SINE Alu 214 298 -14 725 156 22 0 chr1 46851362 46851497 -195812856 + L1MD3 LINE L1 7848 7985 -10 795 278 65 34 chr1 46851516 46851680 -195812673 + L1ME4a LINE L1 5321 5478 -643 233 29 29 0 chr1 46851680 46851714 -195812639 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 795 278 65 34 chr1 46851714 46851888 -195812465 + L1ME4a LINE L1 5478 5645 -476 2268 119 31 6 chr1 46851888 46852240 -195812113 + THE1B LTR MaLR 4 364 0 795 278 65 34 chr1 46852240 46852498 -195811855 + L1ME4a LINE L1 5645 6090 -31 247 269 90 0 chr1 46852657 46852735 -195811618 + L2 LINE L2 3229 3313 0 208 292 133 25 chr1 46853237 46853357 -195810996 - L3 LINE CR1 -245 1332 1200 207 339 83 58 chr1 46854063 46854511 -195809842 - L2 LINE L2 -5 3267 2809 985 256 48 63 chr1 46854532 46854930 -195809423 - MLT1J LTR MaLR 0 511 120 231 421 13 0 chr1 46854967 46855119 -195809234 - L2 LINE L2 -248 3024 2871 432 0 0 0 chr1 46855128 46855176 -195809177 + (TG)n Simple_repeat Simple_repeat 2 49 0 483 192 45 107 chr1 46855691 46855805 -195808548 - MIR SINE MIR -68 194 93 2200 152 113 0 chr1 46855805 46856193 -195808160 - MSTB1 LTR MaLR 0 432 1 483 192 45 107 chr1 46856193 46856255 -195808098 - MIR SINE MIR -169 93 29 268 308 103 20 chr1 46856439 46856585 -195807768 + MIR3 SINE MIR 3 160 -48 230 143 0 0 chr1 46856807 46856842 -195807511 + U2 snRNA snRNA 1 35 -153 596 262 8 0 chr1 46856924 46857050 -195807303 - MIR SINE MIR -58 204 78 203 218 91 0 chr1 46857874 46857929 -195806424 + MIR SINE MIR 77 136 -72 1605 173 45 45 chr1 46858463 46858775 -195805578 + AluJo SINE Alu 1 312 0 758 239 60 5 chr1 46858902 46859103 -195805250 + Charlie5 DNA MER1_type 47 258 -2354 594 191 38 33 chr1 46859106 46859246 -195805107 + Charlie5 DNA MER1_type 2402 2545 -40 2259 128 0 0 chr1 46859246 46859552 -195804801 + AluSx SINE Alu 1 306 -6 594 191 38 33 chr1 46859552 46859594 -195804759 + Charlie5 DNA MER1_type 2545 2585 0 1147 212 18 14 chr1 46859602 46859824 -195804529 - MER58A DNA MER1_type 0 224 2 619 280 50 41 chr1 46859977 46860195 -195804158 - MIR SINE MIR -6 256 37 2283 99 3 7 chr1 46860289 46860583 -195803770 - AluSq SINE Alu -20 293 1 595 287 19 15 chr1 46860606 46860871 -195803482 - L1ME4a LINE L1 -180 5941 5676 1183 160 68 52 chr1 46861912 46862219 -195802134 - MER33 DNA MER1_type 0 324 13 2238 150 35 56 chr1 46863613 46863657 -195800696 - L1MB3 LINE L1 0 6183 6140 2387 95 0 0 chr1 46863657 46863953 -195800400 - AluSg SINE Alu -14 296 1 2238 150 35 56 chr1 46863953 46864387 -195799966 - L1MB3 LINE L1 -43 6140 5715 295 321 113 33 chr1 46864495 46864707 -195799646 - L2 LINE L2 -210 3062 2834 395 264 123 25 chr1 46866389 46866552 -195797801 - MIR SINE MIR -71 191 13 2045 152 0 13 chr1 46866611 46866920 -195797433 + AluSx SINE Alu 1 305 -7 808 240 80 13 chr1 46866937 46867162 -195797191 - MIR SINE MIR -10 252 13 1034 241 147 25 chr1 46867396 46867790 -195796563 + L2 LINE L2 2872 3313 0 236 341 45 0 chr1 46868589 46868677 -195795676 + MIR SINE MIR 169 260 -2 238 308 58 19 chr1 46869351 46869455 -195794898 + MIR3 SINE MIR 7 114 -94 2095 85 41 4 chr1 46870627 46870943 -195793410 + AluSx SINE Alu 1 326 0 1971 134 3 24 chr1 46871305 46871641 -195792712 + AluJb SINE Alu 1 312 0 280 292 40 60 chr1 46872056 46872354 -195791999 - MLT1I LTR MaLR -20 389 98 346 279 44 44 chr1 46872596 46872732 -195791621 + MIR3 SINE MIR 15 150 -58 439 323 130 8 chr1 46873075 46873308 -195791045 + MIR3 SINE MIR 3 249 -13 232 280 0 0 chr1 46873418 46873468 -195790885 + MIR SINE MIR 195 244 -18 2247 113 13 0 chr1 46873478 46873780 -195790573 - AluSx SINE Alu -6 306 1 254 233 0 0 chr1 46873975 46874035 -195790318 - MLT1L LTR MaLR -12 603 544 2312 103 13 7 chr1 46874443 46874745 -195789608 + AluSg SINE Alu 1 304 -6 1846 164 186 198 chr1 46875181 46875234 -195789119 - L1MD3 LINE L1 -19 7976 7924 937 162 60 51 chr1 46875234 46875468 -195788885 - MER106A DNA MER1_type 0 236 1 1846 164 186 198 chr1 46875468 46875923 -195788430 - L1MD3 LINE L1 -71 7924 7465 548 231 35 0 chr1 46875923 46876066 -195788287 - MLT1F1 LTR MaLR -419 148 1 1846 164 186 198 chr1 46876066 46876157 -195788196 - L1MD3 LINE L1 -530 7465 7374 2266 52 0 19 chr1 46876157 46876453 -195787900 + AluY SINE Alu 23 313 0 1846 164 186 198 chr1 46876453 46876925 -195787428 - L1MD3 LINE L1 -621 7374 6774 2257 128 36 25 chr1 46877938 46878297 -195786056 + THE1B LTR MaLR 2 364 0 240 244 61 49 chr1 46878561 46878643 -195785710 + L3 LINE CR1 1493 1575 -2 837 277 10 0 chr1 46879769 46879975 -195784378 + MIR SINE MIR 55 262 0 1228 136 36 45 chr1 46879993 46880214 -195784139 - MER20 DNA MER1_type 0 219 1 232 255 0 0 chr1 46880651 46880698 -195783655 - L2 LINE L2 -21 3292 3246 183 293 69 17 chr1 46881035 46881093 -195783260 + L3b LINE CR1 1418 1478 -105 390 321 70 37 chr1 46881564 46881751 -195782602 + L2 LINE L2 3075 3267 -5 282 307 43 21 chr1 46882385 46882525 -195781828 + L2 LINE L2 2917 3059 -213 239 193 248 35 chr1 46882662 46882807 -195781546 - Charlie7 DNA MER1_type -6 2606 2431 227 194 90 60 chr1 46883254 46883321 -195781032 - MIR3 SINE MIR -54 154 86 3461 212 122 55 chr1 46883561 46884579 -195779774 - LTR28 LTR ERV1 -5 1750 1 249 356 10 0 chr1 46884583 46884684 -195779669 + (CA)n Simple_repeat Simple_repeat 1 102 0 256 294 6 11 chr1 46884688 46884865 -195779488 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 435 315 0 0 chr1 46884872 46885200 -195779153 + (CA)n Simple_repeat Simple_repeat 1 328 0 237 284 111 12 chr1 46885796 46885877 -195778476 - L2 LINE L2 0 3313 3225 420 229 74 91 chr1 46886134 46886213 -195778140 - MIR SINE MIR -41 221 142 950 196 0 18 chr1 46886213 46886381 -195777972 - FAM SINE Alu -10 165 1 420 229 74 91 chr1 46886381 46886476 -195777877 - MIR SINE MIR -120 142 50 2360 116 7 44 chr1 46886778 46887185 -195777168 + L1MB5 LINE L1 5568 5959 -215 1027 297 131 16 chr1 46887554 46887740 -195776613 - L2 LINE L2 -17 3296 3133 2350 112 3 0 chr1 46887740 46888052 -195776301 + AluSp SINE Alu 1 313 0 1027 297 131 16 chr1 46888052 46888632 -195775721 - L2 LINE L2 -180 3133 2447 247 206 15 29 chr1 46889585 46889653 -195774700 + MER5A DNA MER1_type 55 121 -68 1482 193 53 66 chr1 46889805 46890183 -195774170 + MLT1A2 LTR MaLR 2 374 0 864 269 147 12 chr1 46890290 46890753 -195773600 + L2 LINE L2 2705 3312 -1 214 328 60 0 chr1 46890880 46890947 -195773406 - L2 LINE L2 0 3272 3202 388 292 68 21 chr1 46891771 46891926 -195772427 + MIR SINE MIR 7 168 -63 231 264 0 0 chr1 46892018 46892071 -195772282 + L3 LINE CR1 1507 1559 -18 338 278 235 11 chr1 46892494 46892681 -195771672 + MIR SINE MIR 23 251 -11 248 240 0 20 chr1 46892665 46892715 -195771638 - L2 LINE L2 -16 3256 3208 * 1869 148 0 11 chr1 46892823 46893106 -195771247 - AluJo SINE Alu -17 295 16 200 301 68 19 chr1 46893106 46893209 -195771144 - MIR SINE MIR -85 123 16 411 242 20 0 chr1 46893221 46893320 -195771033 + MER5A DNA MER1_type 9 109 -80 593 260 48 39 chr1 46893339 46893547 -195770806 + MIR SINE MIR 1 210 -52 706 333 5 0 chr1 46893953 46894139 -195770214 - MIR3 SINE MIR -6 202 16 640 302 94 18 chr1 46894161 46894502 -195769851 - L2 LINE L2 0 3313 2947 1003 285 66 17 chr1 46894538 46894944 -195769409 - LTR16A LTR ERVL 0 457 1 240 336 67 27 chr1 46895043 46895192 -195769161 - L2 LINE L2 0 3313 3159 43 20 0 0 chr1 46895748 46895798 -195768555 + AT_rich Low_complexity Low_complexity 1 50 0 228 316 3 0 chr1 46896622 46896699 -195767654 + MIR SINE MIR 68 146 -62 263 267 151 49 chr1 46896822 46897047 -195767306 - MARNA DNA Mariner -166 420 173 217 180 40 0 chr1 46897406 46897456 -195766897 + CT-rich Low_complexity Low_complexity 4 55 0 287 263 172 0 chr1 46898377 46898476 -195765877 + MIR SINE MIR 81 196 -66 892 238 43 0 chr1 46898615 46898825 -195765528 + HERVH LTR ERV1 1760 1978 -5735 943 113 0 8 chr1 46898826 46898959 -195765394 + AluSp/q SINE Alu 174 305 -8 379 224 13 13 chr1 46899298 46899374 -195764979 + MER91B DNA MER1_type 1 76 -114 1989 146 0 7 chr1 46899461 46899749 -195764604 + AluJb SINE Alu 3 288 -24 1153 106 12 12 chr1 46899796 46899957 -195764396 + AluSq SINE Alu 1 161 -152 585 208 7 28 chr1 46900199 46900343 -195764010 + LTR7 LTR ERV1 303 443 -7 855 141 8 0 chr1 46900348 46900476 -195763877 + AluSq SINE Alu 155 283 -30 608 76 0 29 chr1 46900476 46900581 -195763772 + (TC)n Simple_repeat Simple_repeat 1 102 0 387 0 0 0 chr1 46900581 46900624 -195763729 + (TA)n Simple_repeat Simple_repeat 2 44 0 352 287 28 56 chr1 46901172 46901315 -195763038 + MIR SINE MIR 83 221 -41 403 271 88 24 chr1 46901864 46902034 -195762319 + MIR SINE MIR 7 187 -75 1620 209 56 26 chr1 46902055 46902433 -195761920 - MLT1B LTR MaLR 0 390 2 636 257 115 71 chr1 46902951 46903402 -195760951 + MLT1H LTR MaLR 75 545 -4 522 246 41 8 chr1 46904493 46904615 -195759738 - L2 LINE L2 -1 3312 3187 279 258 21 32 chr1 46904846 46904939 -195759414 + MER94 DNA DNA 2 93 -41 340 217 12 24 chr1 46904942 46905025 -195759328 + MER94 DNA DNA 52 133 -1 480 309 34 0 chr1 46905026 46905230 -195759123 + L1M4 LINE L1 2381 2591 -3555 186 264 28 165 chr1 46905531 46905713 -195758640 + MER5B DNA MER1_type 5 161 -17 2059 129 7 7 chr1 46906201 46906484 -195757869 + AluSp SINE Alu 1 286 -27 298 0 0 0 chr1 46906484 46906517 -195757836 + (TAAA)n Simple_repeat Simple_repeat 2 144 0 2059 129 7 7 chr1 46906517 46906535 -195757818 + AluSp SINE Alu 285 302 -11 1265 164 68 64 chr1 46906619 46906796 -195757557 - AluJo SINE Alu 0 312 131 2240 59 0 11 chr1 46906796 46907122 -195757231 + AluY SINE Alu 1 323 0 1265 164 68 64 chr1 46907122 46907254 -195757099 - AluJo SINE Alu -181 131 1 579 228 0 8 chr1 46907316 46907439 -195756914 - L2 LINE L2 0 3313 3192 425 282 55 51 chr1 46907494 46907749 -195756604 - L1ME4a LINE L1 -238 5883 5628 2919 209 33 38 chr1 46907808 46909235 -195755118 - L1MD2 LINE L1 -98 6068 4662 681 249 44 19 chr1 46909234 46909439 -195754914 - L1ME4a LINE L1 -506 5615 5406 * 898 262 129 57 chr1 46909721 46910446 -195753907 + L2 LINE L2 2523 3312 -1 2113 98 0 23 chr1 46910492 46910835 -195753518 - AluSq SINE Alu 0 313 1 726 264 63 26 chr1 46910837 46911106 -195753247 - L1ME LINE L1 -382 5739 5461 849 158 140 35 chr1 46911473 46911644 -195752709 - MER5A DNA MER1_type 0 189 1 244 326 92 0 chr1 46912089 46912187 -195752166 - MIR3 SINE MIR -52 156 50 180 0 0 0 chr1 46912869 46912889 -195751464 + (A)n Simple_repeat Simple_repeat 1 20 0 261 304 88 42 chr1 46912988 46913167 -195751186 - MIR SINE MIR -60 202 25 2009 92 7 52 chr1 46913205 46913510 -195750843 + AluSx SINE Alu 6 296 -16 279 285 239 0 chr1 46913652 46913782 -195750571 + MER5A DNA MER1_type 23 183 -6 514 283 116 10 chr1 46913943 46914141 -195750212 - MIR SINE MIR -8 254 36 287 319 9 60 chr1 46914441 46914557 -195749796 - MIR3 SINE MIR -52 156 47 180 350 125 0 chr1 46914504 46914624 -195749729 - L2 LINE L2 -475 2839 2705 * 252 0 0 0 chr1 46914781 46914809 -195749544 + (CA)n Simple_repeat Simple_repeat 1 28 0 326 250 142 14 chr1 46915315 46915463 -195748890 - MIR SINE MIR -77 185 19 432 270 95 15 chr1 46915512 46915649 -195748704 + MIR SINE MIR 105 252 -10 356 245 35 63 chr1 46916264 46916407 -195747946 - L1ME LINE L1 -454 5667 5529 295 299 96 16 chr1 46916384 46916571 -195747782 + L1ME4a LINE L1 5691 5892 -229 * 479 188 161 20 chr1 46916600 46916749 -195747604 + L1ME4a LINE L1 5951 6120 -1 280 160 60 0 chr1 46917143 46917193 -195747160 + MIR SINE MIR 118 170 -92 226 254 18 0 chr1 46917308 46917363 -195746990 - LTR16C LTR ERVL -246 245 190 201 281 35 0 chr1 46918247 46918304 -195746049 - L2 LINE L2 0 3313 3255 264 337 91 5 chr1 46919221 46919408 -195744945 + L2 LINE L2 2966 3168 -145 182 204 68 0 chr1 46919467 46919511 -195744842 + L2 LINE L2 3192 3238 -75 2270 74 3 10 chr1 46919875 46920174 -195744179 + AluSc SINE Alu 1 297 -12 346 279 0 74 chr1 46920741 46920763 -195743590 - L2 LINE L2 -3 3269 3247 198 0 0 0 chr1 46920763 46920785 -195743568 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 346 279 0 74 chr1 46920785 46920884 -195743469 - L2 LINE L2 -25 3247 3157 278 290 61 10 chr1 46920948 46921080 -195743273 - MER20B DNA MER1_type 0 219 80 638 258 71 6 chr1 46921189 46921371 -195742982 - MIR SINE MIR -65 197 4 520 228 0 6 chr1 46921917 46922075 -195742278 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 252 342 198 20 chr1 46922311 46922513 -195741840 - MIR SINE MIR -3 259 22 322 289 196 21 chr1 46923016 46923203 -195741150 + MIR3 SINE MIR 34 249 -13 235 283 62 35 chr1 46923364 46923477 -195740876 - MIR3 SINE MIR -89 119 4 187 241 35 17 chr1 46923561 46923619 -195740734 + L2 LINE L2 3210 3268 -4 534 191 62 0 chr1 46924069 46924214 -195740139 + MIR SINE MIR 1 148 -62 333 338 26 26 chr1 46924408 46924559 -195739794 + MIR SINE MIR 89 239 -23 230 363 9 26 chr1 46924617 46924730 -195739623 + MIR SINE MIR 35 145 -63 392 323 0 15 chr1 46925443 46925576 -195738777 - MIR SINE MIR -56 152 22 320 296 26 35 chr1 46926502 46926617 -195737736 + MIR3 SINE MIR 49 162 -46 506 299 32 11 chr1 46926910 46927097 -195737256 - MIR SINE MIR -54 208 18 212 310 136 39 chr1 46927389 46927544 -195736809 + L2 LINE L2 3098 3267 -5 253 232 0 0 chr1 46928838 46928894 -195735459 + (CAT)n Simple_repeat Simple_repeat 1 56 0 458 305 56 24 chr1 46928966 46929179 -195735174 + MIR SINE MIR 20 239 -23 256 257 124 29 chr1 46929902 46930007 -195734346 - MIR SINE MIR -117 145 31 412 282 60 13 chr1 46930621 46930770 -195733583 + MIR3 SINE MIR 24 179 -29 330 281 24 0 chr1 46931200 46931282 -195733071 - L2 LINE L2 -1 3271 3188 434 264 91 0 chr1 46931834 46931944 -195732409 + MIR SINE MIR 47 166 -96 2110 218 116 4 chr1 46932301 46932782 -195731571 - MLT1F LTR MaLR -4 538 4 356 316 68 17 chr1 46933091 46933208 -195731145 + L3 LINE CR1 1380 1502 -75 357 240 144 16 chr1 46933852 46933977 -195730376 - MIR3 SINE MIR -43 165 25 325 322 25 0 chr1 46934134 46934252 -195730101 + MIR SINE MIR 31 151 -111 379 288 14 29 chr1 46934501 46934640 -195729713 + MIR3 SINE MIR 40 176 -32 232 261 102 0 chr1 46934838 46934926 -195729427 - MIR SINE MIR -67 141 45 541 279 57 0 chr1 46935920 46936078 -195728275 - MIR SINE MIR -70 192 26 359 287 58 23 chr1 46936292 46936466 -195727887 - MIR SINE MIR -63 199 20 341 261 127 22 chr1 46936944 46937078 -195727275 + MIR SINE MIR 101 248 -14 303 321 51 31 chr1 46937263 46937459 -195726894 - L3 LINE CR1 -33 1544 1345 376 313 17 0 chr1 46937586 46937701 -195726652 + MIR SINE MIR 2 118 -144 305 270 45 11 chr1 46938394 46938483 -195725870 + MIR SINE MIR 86 177 -85 462 284 7 21 chr1 46939088 46939229 -195725124 + MIR SINE MIR 47 185 -77 182 293 52 0 chr1 46939686 46939744 -195724609 + MIR SINE MIR 83 143 -65 192 77 0 0 chr1 46940376 46940402 -195723951 + (CCCTAA)n Simple_repeat Simple_repeat 3 28 0 350 57 19 0 chr1 46940683 46940736 -195723617 + (TG)n Simple_repeat Simple_repeat 1 54 0 466 291 112 44 chr1 46940992 46941288 -195723065 + L2 LINE L2 2553 2868 -446 220 184 0 0 chr1 46941301 46941339 -195723014 + CT-rich Low_complexity Low_complexity 1 38 0 325 271 45 121 chr1 46941367 46941566 -195722787 + L2 LINE L2 2999 3182 -90 792 170 0 22 chr1 46941627 46941809 -195722544 + GA-rich Low_complexity Low_complexity 1 178 0 217 254 14 42 chr1 46941885 46941956 -195722397 - L2 LINE L2 -11 3261 3193 864 298 11 30 chr1 46942367 46942632 -195721721 + MIR SINE MIR 1 260 -2 2163 93 7 20 chr1 46942707 46943008 -195721345 + AluSq SINE Alu 1 297 -16 4309 121 20 0 chr1 46943008 46943644 -195720709 - L1MB1 LINE L1 -6 6162 5514 313 309 30 36 chr1 46944292 46944457 -195719896 + MIR SINE MIR 28 191 -71 211 256 38 90 chr1 46944935 46945068 -195719285 + L2 LINE L2 2924 3049 -223 345 82 0 0 chr1 46945398 46945447 -195718906 + (TG)n Simple_repeat Simple_repeat 1 49 0 180 125 0 0 chr1 46945449 46945481 -195718872 + (GA)n Simple_repeat Simple_repeat 2 33 0 464 221 48 0 chr1 46945768 46945872 -195718481 - MIR SINE MIR -48 214 106 348 279 16 39 chr1 46946235 46946364 -195717989 + L2 LINE L2 3186 3311 -2 272 333 21 0 chr1 46946462 46946555 -195717798 + MIR SINE MIR 38 132 -76 1067 254 113 47 chr1 46946580 46946962 -195717391 + L2 LINE L2 2905 3311 -2 215 337 48 0 chr1 46948493 46948576 -195715777 - MIR SINE MIR -144 118 32 388 373 76 0 chr1 46949646 46949871 -195714482 + MIR SINE MIR 9 250 -12 272 303 18 28 chr1 46949873 46949982 -195714371 + CT-rich Low_complexity Low_complexity 1 108 0 507 263 26 7 chr1 46950413 46950565 -195713788 + L3 LINE CR1 1350 1504 -73 185 260 100 0 chr1 46950702 46950752 -195713601 - MIR SINE MIR -160 102 48 457 274 73 54 chr1 46951715 46951919 -195712434 + L2 LINE L2 3103 3310 -3 239 260 31 52 chr1 46952119 46952215 -195712138 + MIR3 SINE MIR 106 199 -9 473 321 85 40 chr1 46952559 46952783 -195711570 - MIR SINE MIR -21 241 8 489 298 77 32 chr1 46953151 46953385 -195710968 + MIR SINE MIR 4 247 -15 183 205 26 0 chr1 46953796 46953835 -195710518 - MIR3 SINE MIR -7 201 162 309 180 16 0 chr1 46954899 46954960 -195709393 - MLT1L LTR MaLR -7 608 547 261 233 88 138 chr1 46955150 46955309 -195709044 - MLT1L LTR MaLR -299 316 166 436 285 0 8 chr1 46955500 46955623 -195708730 - LTR67 LTR ERVL -8 549 428 715 274 66 8 chr1 46956337 46956578 -195707775 - MIR SINE MIR -4 258 4 708 280 66 8 chr1 46956338 46956581 -195707772 - MIR SINE MIR -5 257 1 2113 135 26 0 chr1 46957635 46957939 -195706414 + AluSx SINE Alu 1 312 0 1053 145 11 6 chr1 46957951 46958130 -195706223 + L1PA16 LINE L1 5953 6132 -34 389 214 0 0 chr1 46958210 46958280 -195706073 - MER58A DNA MER1_type -21 86 17 331 345 12 36 chr1 46958411 46958576 -195705777 - L1ME LINE L1 -459 5662 5502 324 283 57 25 chr1 46959036 46959195 -195705158 + MIR SINE MIR 82 245 -17 195 250 0 0 chr1 46959287 46959339 -195705014 + L2 LINE L2 3262 3313 0 332 259 130 9 chr1 46959339 46959447 -195704906 + MIR SINE MIR 24 144 -118 217 309 44 0 chr1 46959475 46959543 -195704810 - MIR SINE MIR -124 138 68 539 242 103 36 chr1 46960111 46960276 -195704077 - MIR SINE MIR -72 190 15 233 351 0 21 chr1 46960493 46960587 -195703766 - L2 LINE L2 0 3313 3222 * 1143 216 38 1 chr1 46960582 46960836 -195703517 - MIR SINE MIR 0 262 1 306 296 53 65 chr1 46961018 46961187 -195703166 + MIR SINE MIR 40 206 -56 201 74 0 0 chr1 46961262 46961289 -195703064 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 241 328 50 17 chr1 46961442 46961561 -195702792 - L2 LINE L2 -9 3263 3141 538 317 43 5 chr1 46961604 46961812 -195702541 - MIR SINE MIR 0 262 47 195 204 0 0 chr1 46961989 46962038 -195702315 + (ATG)n Simple_repeat Simple_repeat 2 50 0 385 335 54 6 chr1 46962049 46962216 -195702137 - MIR SINE MIR -12 250 76 233 259 0 0 chr1 46962295 46962349 -195702004 + L2 LINE L2 3219 3272 0 231 146 21 0 chr1 46962826 46962874 -195701479 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 390 279 43 21 chr1 46963519 46963659 -195700694 + MIR3 SINE MIR 20 162 -46 547 315 111 50 chr1 46963940 46964238 -195700115 - L2 LINE L2 -18 3254 2939 855 231 57 13 chr1 46966081 46966310 -195698043 - MIR SINE MIR -1 261 23 298 317 20 10 chr1 46966935 46967051 -195697302 + MIR SINE MIR 33 149 -63 306 238 228 11 chr1 46967317 46967506 -195696847 - L1ME4a LINE L1 -3 6118 5889 369 297 20 11 chr1 46968126 46968313 -195696040 - MIR3 SINE MIR -60 202 14 211 315 54 18 chr1 46968667 46968778 -195695575 + L2 LINE L2 3182 3296 -17 311 258 188 8 chr1 46969298 46969426 -195694927 + MIR SINE MIR 28 178 -84 189 107 0 0 chr1 46969742 46969770 -195694583 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 185 316 137 0 chr1 46969775 46969870 -195694483 - L2 LINE L2 -14 3258 3151 375 359 67 42 chr1 46970210 46970567 -195693786 + L1ME LINE L1 4773 5138 -1008 305 315 101 23 chr1 46970670 46971030 -195693323 + L1ME LINE L1 5263 5656 -465 712 267 116 4 chr1 46971057 46971289 -195693064 + MIR SINE MIR 2 259 -3 385 200 0 33 chr1 46971295 46971385 -195692968 + L1ME LINE L1 5683 5769 -352 2579 219 18 70 chr1 46971554 46972080 -195692273 + MER82 DNA MER2_type 5 488 -165 1796 90 5 0 chr1 46972080 46972302 -195692051 + AluSx SINE Alu 3 225 -87 2579 219 18 70 chr1 46972302 46972460 -195691893 + MER82 DNA MER2_type 488 653 0 1905 189 22 6 chr1 46972475 46972834 -195691519 - MLT1A1 LTR MaLR 0 365 1 974 183 46 54 chr1 46973034 46973275 -195691078 - MIR SINE MIR 0 262 24 2525 87 0 0 chr1 46973275 46973586 -195690767 - AluSq SINE Alu -2 311 1 213 121 0 0 chr1 46976215 46976248 -195688105 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 296 216 68 0 chr1 46976358 46976432 -195687921 + Charlie4 DNA MER1_type 1883 1961 0 674 256 225 20 chr1 46976898 46977267 -195687086 + L2 LINE L2 2709 3153 -160 234 307 30 20 chr1 46977371 46977472 -195686881 - MIR SINE MIR -56 206 105 2257 112 0 10 chr1 46977848 46978184 -195686169 + AluSx SINE Alu 1 312 0 212 303 0 15 chr1 46978752 46978818 -195685535 - L2 LINE L2 -91 3181 3117 371 204 87 19 chr1 46979341 46979444 -195684909 + MIR SINE MIR 111 220 -42 347 232 44 42 chr1 46979494 46979639 -195684714 - MIR SINE MIR -63 145 49 375 238 87 8 chr1 46980040 46980166 -195684187 + MIR3 SINE MIR 38 173 -35 210 298 33 66 chr1 46981122 46981273 -195683080 + L2 LINE L2 2914 3059 -213 350 280 97 43 chr1 46981775 46981982 -195682371 - L2 LINE L2 -27 3245 3028 1585 185 0 0 chr1 46982834 46983083 -195681270 + AluJo SINE Alu 7 255 -57 288 0 0 0 chr1 46983100 46983132 -195681221 + (CA)n Simple_repeat Simple_repeat 2 33 0 529 233 68 27 chr1 46983179 46983325 -195681028 + MIR SINE MIR 111 262 0 696 202 30 36 chr1 46983391 46983559 -195680794 - L1MB1 LINE L1 -1 6167 6001 374 257 22 2 chr1 46984835 46984960 -195679393 + MIR SINE MIR 20 146 -62 575 284 37 9 chr1 46986422 46986634 -195677719 - MIR SINE MIR -6 256 35 315 276 0 11 chr1 46986678 46986765 -195677588 + MIR SINE MIR 158 243 -19 404 256 89 146 chr1 46986880 46987373 -195676980 - MLT1K LTR MaLR -114 474 10 254 317 6 27 chr1 46987459 46987570 -195676783 - MIR SINE MIR -66 142 41 2299 108 7 0 chr1 46987660 46987966 -195676387 + AluSg SINE Alu 2 309 -1 360 248 155 31 chr1 46988563 46988867 -195675486 - L2 LINE L2 -245 3068 2730 252 300 33 8 chr1 46989120 46989240 -195675113 + MER103 DNA DNA 42 164 -2 226 361 113 0 chr1 46989759 46989856 -195674497 - L2 LINE L2 0 3272 3165 223 333 37 28 chr1 46990532 46990640 -195673713 + MIR SINE MIR 117 225 -37 361 258 178 27 chr1 46991324 46991488 -195672865 + MIR SINE MIR 30 214 -48 206 364 65 24 chr1 46992013 46992260 -195672093 + L2 LINE L2 2849 3105 -167 189 326 47 23 chr1 46993090 46993176 -195671177 + L2 LINE L2 2729 2816 -498 1049 281 27 52 chr1 46993176 46993578 -195670775 + L2 LINE L2 2922 3313 0 191 186 0 0 chr1 46993703 46993746 -195670607 + MIR SINE MIR 108 150 -112 231 329 25 0 chr1 46993848 46993927 -195670426 - L2 LINE L2 0 3313 3233 2335 199 9 63 chr1 46994098 46994637 -195669716 - MLT2B1 LTR ERVL -10 510 1 189 206 0 0 chr1 46995088 46995122 -195669231 - L2 LINE L2 -18 3295 3262 182 289 0 0 chr1 46995090 46995135 -195669218 - MIR SINE MIR -14 248 204 * 252 309 103 72 chr1 46996146 46996340 -195668013 - MIR SINE MIR -14 248 49 322 304 109 24 chr1 46996913 46997160 -195667193 - L2 LINE L2 -181 3091 2824 366 284 52 9 chr1 46997543 46997659 -195666694 - MIR SINE MIR -128 134 14 375 78 0 0 chr1 46997845 46997896 -195666457 + (CA)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chr1 46998268 46998301 -195666052 + (TG)n Simple_repeat Simple_repeat 2 34 0 442 205 0 0 chr1 47000594 47000672 -195663681 - MER96 DNA MER1_type? -93 82 5 22 70 0 0 chr1 47001275 47001318 -195663035 + GC_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr1 47001501 47001523 -195662830 + GC_rich Low_complexity Low_complexity 1 22 0 180 125 0 0 chr1 47001736 47001768 -195662585 + (CCGAG)n Simple_repeat Simple_repeat 5 36 0 246 116 0 0 chr1 47001805 47001848 -195662505 + (CAGCC)n Simple_repeat Simple_repeat 1 43 0 26 0 0 0 chr1 47001885 47001911 -195662442 + GC_rich Low_complexity Low_complexity 1 26 0 492 239 14 7 chr1 47003148 47003286 -195661067 - MER103 DNA DNA -2 164 26 253 333 67 17 chr1 47003357 47003508 -195660845 - MIR SINE MIR -4 204 48 199 200 154 15 chr1 47003494 47003559 -195660794 - MIR SINE MIR -113 95 22 * 242 342 0 8 chr1 47003802 47003919 -195660434 + (CA)n Simple_repeat Simple_repeat 1 116 0 245 254 16 0 chr1 47004373 47004436 -195659917 + L2 LINE L2 3247 3310 -3 702 316 93 23 chr1 47004494 47004880 -195659473 - L2 LINE L2 -17 3296 2884 190 261 123 31 chr1 47005047 47005112 -195659241 + MIR3 SINE MIR 134 204 -4 186 378 78 5 chr1 47005307 47005500 -195658853 + MIR SINE MIR 56 262 0 191 276 0 71 chr1 47005526 47005624 -195658729 + L2 LINE L2 3215 3305 -8 * 259 313 71 10 chr1 47005615 47005714 -195658639 - MIR SINE MIR -152 110 6 190 285 120 32 chr1 47005923 47006081 -195658272 - MER5B DNA MER1_type 0 178 7 247 301 91 14 chr1 47006196 47006339 -195658014 + MIR SINE MIR 19 172 -90 353 274 26 18 chr1 47006958 47007071 -195657282 + MIR SINE MIR 66 179 -83 365 335 50 3 chr1 47007128 47007335 -195657018 + MIR SINE MIR 1 214 -48 424 292 68 6 chr1 47007575 47007736 -195656617 + MIR3 SINE MIR 36 206 -2 725 249 11 119 chr1 47008131 47008400 -195655953 - L2 LINE L2 -2 3311 3087 2293 124 0 0 chr1 47008400 47008707 -195655646 - AluSx SINE Alu -5 307 1 725 249 11 119 chr1 47008707 47008791 -195655562 - L2 LINE L2 -226 3087 2996 281 333 80 25 chr1 47008999 47009161 -195655192 - MIR SINE MIR -46 216 46 1344 144 87 4 chr1 47009285 47009549 -195654804 + L1MD3 LINE L1 7710 7995 0 261 0 0 0 chr1 47010025 47010054 -195654299 + (T)n Simple_repeat Simple_repeat 1 29 0 207 288 34 17 chr1 47010139 47010198 -195654155 + MIR3 SINE MIR 118 177 -31 268 204 194 0 chr1 47010551 47010649 -195653704 + MER103 DNA DNA 1 117 -49 219 69 0 0 chr1 47010772 47010801 -195653552 + (CA)n Simple_repeat Simple_repeat 2 30 0 284 257 4 52 chr1 47011784 47011919 -195652434 + MIR SINE MIR 21 143 -68 514 265 176 30 chr1 47012052 47012288 -195652065 + L1MC4a LINE L1 5317 5517 -2291 1211 202 72 36 chr1 47012288 47012542 -195651811 + MER2 DNA MER2_type 1 271 -73 2389 101 0 3 chr1 47012542 47012848 -195651505 - AluSq SINE Alu -8 305 1 1211 202 72 36 chr1 47012848 47012925 -195651428 + MER2 DNA MER2_type 271 344 0 514 265 176 30 chr1 47012925 47013183 -195651170 + L1MC4a LINE L1 5517 5883 -1925 391 264 0 41 chr1 47013438 47013559 -195650794 + MIR SINE MIR 137 252 -10 385 312 68 34 chr1 47014022 47014259 -195650094 - L3 LINE CR1 -747 830 586 320 279 82 70 chr1 47014534 47014692 -195649661 + MER5A DNA MER1_type 7 166 -23 245 331 128 12 chr1 47014696 47014868 -195649485 - MIR SINE MIR -51 211 20 282 229 29 14 chr1 47015193 47015263 -195649090 + MIR3 SINE MIR 87 157 -51 335 313 152 24 chr1 47015484 47015695 -195648658 + MIR SINE MIR 3 240 -22 1812 195 47 70 chr1 47016719 47017232 -195647121 + MLT1D LTR MaLR 1 501 -4 185 328 147 0 chr1 47017624 47017740 -195646613 + MIR SINE MIR 15 147 -115 355 209 0 35 chr1 47017957 47018043 -195646310 - MER96 DNA MER1_type? 0 175 93 366 184 122 31 chr1 47018057 47018155 -195646198 - MIR SINE MIR -57 151 45 439 296 48 21 chr1 47018223 47018409 -195645944 - L2 LINE L2 -1 3312 3122 200 219 0 0 chr1 47018433 47018474 -195645879 + MER91A DNA MER1_type 12 52 -144 280 291 111 0 chr1 47019133 47019250 -195645103 + MIR SINE MIR 47 176 -86 191 111 0 0 chr1 47019257 47019284 -195645069 + (A)n Simple_repeat Simple_repeat 1 27 0 384 343 7 0 chr1 47019516 47019653 -195644700 - MIR3 SINE MIR -25 183 46 2027 143 10 0 chr1 47019790 47020084 -195644269 + AluJb SINE Alu 2 298 -14 206 276 110 63 chr1 47020490 47020617 -195643736 - L2 LINE L2 0 3272 3140 249 277 106 64 chr1 47021485 47021626 -195642727 - L2 LINE L2 -217 3055 2909 683 276 61 18 chr1 47021904 47022132 -195642221 - MIR SINE MIR -7 255 18 218 324 78 0 chr1 47022953 47023055 -195641298 - MIR SINE MIR -72 190 81 262 263 165 53 chr1 47023129 47023262 -195641091 + MIR SINE MIR 107 254 -8 662 127 17 0 chr1 47025020 47025138 -195639215 - L1MB3 LINE L1 -3 6574 6455 906 116 13 18 chr1 47025152 47025376 -195638977 + (TTTC)n Simple_repeat Simple_repeat 1 223 0 1807 157 10 0 chr1 47025377 47025670 -195638683 - L1PB4 LINE L1 -1 6155 5860 474 229 20 13 chr1 47025672 47025818 -195638535 - L1MB3 LINE L1 -126 6451 6303 321 226 30 68 chr1 47026281 47026414 -195637939 - L1PB4 LINE L1 -364 5801 5674 674 295 132 28 chr1 47026465 47026611 -195637742 - L1MB3 LINE L1 -733 5825 5696 2073 77 0 0 chr1 47026611 47026859 -195637494 - AluSq SINE Alu -10 303 56 674 295 132 28 chr1 47026859 47027300 -195637053 - L1MB3 LINE L1 -862 5696 5362 1005 224 27 39 chr1 47027303 47027562 -195636791 + L2 LINE L2 3057 3312 -1 326 326 161 17 chr1 47027619 47027849 -195636504 - L1MB3 LINE L1 -2623 3917 3655 239 293 13 60 chr1 47027863 47028013 -195636340 - L1MC4 LINE L1 -1286 6756 6614 237 272 0 22 chr1 47027973 47028065 -195636288 + L1MC4 LINE L1 6614 6703 -1339 * 249 284 0 0 chr1 47028026 47028114 -195636239 - L1MC4 LINE L1 -1340 6702 6615 1470 306 119 32 chr1 47028121 47029170 -195635183 - L1MB3 LINE L1 -2979 3561 2417 876 246 117 24 chr1 47029654 47030058 -195634295 - MER110A LTR ERV1 0 468 71 1836 119 0 4 chr1 47030809 47031061 -195633292 - AluSc SINE Alu -4 305 55 564 96 0 0 chr1 47031062 47031135 -195633218 + Alu SINE Alu 6 78 -231 191 400 48 0 chr1 47031238 47031343 -195633010 + L2 LINE L2 3203 3312 -1 246 301 0 105 chr1 47031573 47031716 -195632637 - L2 LINE L2 -252 3020 2893 426 319 42 33 chr1 47031961 47032174 -195632179 + L3 LINE CR1 884 1098 -479 * 434 315 108 26 chr1 47032168 47032400 -195631953 - MIR SINE MIR -10 252 2 1694 190 115 56 chr1 47032731 47033160 -195631193 - MLT1E3 LTR MaLR 0 624 149 6064 116 8 19 chr1 47033160 47034284 -195630069 - L1PA16 LINE L1 -9 6157 5029 1694 190 115 56 chr1 47034284 47034443 -195629910 - MLT1E3 LTR MaLR -475 149 1 213 342 13 0 chr1 47035407 47035483 -195628870 - MER5B DNA MER1_type -45 133 57 285 109 0 0 chr1 47035681 47035727 -195628626 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 220 194 247 32 chr1 47035727 47035820 -195628533 + MER5A DNA MER1_type 72 184 -5 417 241 28 99 chr1 47036202 47036343 -195628010 + MIR SINE MIR 47 177 -85 384 284 38 16 chr1 47036570 47036722 -195627631 - MIR SINE MIR -36 172 36 1041 163 0 34 chr1 47037836 47038014 -195626339 - FRAM SINE Alu -13 163 1 718 197 235 11 chr1 47038112 47038295 -195626058 + MER58A DNA MER1_type 1 224 0 2423 100 3 0 chr1 47038397 47038706 -195625647 - AluSg SINE Alu 0 310 1 187 310 0 0 chr1 47039928 47039986 -195624367 - MIR3 SINE MIR -138 70 13 729 225 86 5 chr1 47040537 47040724 -195623629 + MIR SINE MIR 48 249 -13 234 299 64 51 chr1 47040760 47040917 -195623436 + L2 LINE L2 2597 2755 -559 810 211 83 0 chr1 47040928 47041108 -195623245 - MER58A DNA MER1_type 0 224 30 1420 213 13 19 chr1 47041795 47042109 -195622244 + AluJo SINE Alu 1 312 0 200 271 35 24 chr1 47042279 47042364 -195621989 + MER5A DNA MER1_type 7 92 -97 265 241 45 98 chr1 47042544 47042656 -195621697 - MIR SINE MIR -72 136 31 211 300 50 0 chr1 47042718 47042778 -195621575 + L2 LINE L2 3247 3309 -4 224 138 138 0 chr1 47044080 47044138 -195620215 - L2 LINE L2 -79 3234 3169 437 265 262 2 chr1 47044347 47044775 -195619578 - L2 LINE L2 -291 3022 2473 382 232 61 0 chr1 47044817 47044899 -195619454 + MIR3 SINE MIR 91 177 -31 462 270 138 0 chr1 47046091 47046250 -195618103 + L3 LINE CR1 1168 1348 -229 325 270 130 40 chr1 47046301 47046501 -195617852 + L1MB7 LINE L1 5601 5818 -303 853 269 71 8 chr1 47046534 47046772 -195617581 + MIR SINE MIR 2 254 -8 741 192 0 8 chr1 47046862 47046992 -195617361 + FLAM_A SINE Alu 3 131 -2 214 267 33 0 chr1 47047112 47047172 -195617181 + L3 LINE CR1 1515 1576 -1 29 47 0 0 chr1 47047666 47047709 -195616644 + AT_rich Low_complexity Low_complexity 1 43 0 270 0 0 0 chr1 47047767 47047797 -195616556 + (A)n Simple_repeat Simple_repeat 1 30 0 273 323 89 0 chr1 47048064 47048188 -195616165 + MIR3 SINE MIR 53 187 -21 1302 152 14 18 chr1 47049622 47049922 -195614431 + L1MB7 LINE L1 5822 6166 -18 283 305 180 23 chr1 47050102 47050230 -195614123 - L2 LINE L2 0 3272 3125 333 218 59 20 chr1 47051023 47051124 -195613229 + MIR SINE MIR 79 183 -79 204 259 142 80 chr1 47051754 47051916 -195612437 - MIR3 SINE MIR -7 201 30 503 296 89 9 chr1 47051990 47052203 -195612150 + MIR SINE MIR 13 242 -20 224 179 0 71 chr1 47052396 47052452 -195611901 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 361 317 50 78 chr1 47053186 47053386 -195610967 - L2 LINE L2 -61 3211 3020 2030 159 46 48 chr1 47053386 47053800 -195610553 - MLT2D LTR ERVL 0 414 2 361 317 50 78 chr1 47053800 47053880 -195610473 - L2 LINE L2 -252 3020 2939 1893 95 91 46 chr1 47054539 47054824 -195609529 - AluSq SINE Alu -15 298 1 442 258 164 0 chr1 47055499 47055658 -195608695 + MLT1J LTR MaLR 14 198 -313 353 263 124 0 chr1 47055711 47055848 -195608505 + MLT1J LTR MaLR 306 459 -52 657 265 101 116 chr1 47056150 47056491 -195607862 + HAL1 LINE L1 1016 1347 -1160 798 162 7 29 chr1 47056491 47056627 -195607726 + FLAM_C SINE Alu 1 133 0 657 265 101 116 chr1 47056627 47056847 -195607506 + HAL1 LINE L1 1347 1569 -938 331 200 105 71 chr1 47057203 47057402 -195606951 + HAL1b LINE L1 763 2358 -149 448 192 59 103 chr1 47058121 47058202 -195606151 - L1ME3 LINE L1 -6 6156 6073 408 88 0 0 chr1 47058202 47058259 -195606094 + (TG)n Simple_repeat Simple_repeat 2 58 0 448 192 59 103 chr1 47058259 47058380 -195605973 - L1ME3 LINE L1 -89 6073 5963 497 130 22 0 chr1 47058394 47058486 -195605867 + CT-rich Low_complexity Low_complexity 4 97 0 1997 167 0 3 chr1 47058484 47058790 -195605563 - AluJo SINE Alu -5 307 3 259 186 0 43 chr1 47058791 47058861 -195605492 - L1ME3 LINE L1 -194 5976 5910 837 189 47 46 chr1 47058861 47059123 -195605230 - MSTD LTR MaLR -5 391 86 1716 229 66 19 chr1 47059172 47059687 -195604666 - L1ME3 LINE L1 -247 5915 5377 * 10495 189 32 27 chr1 47059684 47059954 -195604399 + L1 LINE L1 2544 2811 -3335 2193 117 7 0 chr1 47059954 47060244 -195604109 + AluSx SINE Alu 1 292 -20 2251 118 0 3 chr1 47060246 47060559 -195603794 + AluSx SINE Alu 1 312 0 10495 189 32 27 chr1 47060559 47062801 -195601552 + L1 LINE L1 2811 5072 -1074 247 73 24 0 chr1 47062799 47062840 -195601513 + L1M4 LINE L1 5029 5070 -1076 * 4010 174 57 19 chr1 47062910 47064044 -195600309 - L1MB2 LINE L1 -7 6164 4979 1364 219 40 67 chr1 47064095 47064499 -195599854 - L1ME3 LINE L1 -897 5249 4836 1933 164 0 4 chr1 47064499 47064780 -195599573 + AluJb SINE Alu 1 280 -32 243 0 0 0 chr1 47064782 47064809 -195599544 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1364 219 40 67 chr1 47064809 47064926 -195599427 - L1ME3 LINE L1 -1311 4835 4739 735 238 133 0 chr1 47065990 47066171 -195598182 + MIR SINE MIR 39 243 -19 205 226 194 11 chr1 47066843 47066936 -195597417 + MIR SINE MIR 38 147 -115 24 0 0 0 chr1 47066991 47067015 -195597338 + AT_rich Low_complexity Low_complexity 1 24 0 3091 64 81 0 chr1 47067608 47068027 -195596326 - MLT2A2 LTR ERVL 0 453 1 314 326 32 0 chr1 47068497 47068592 -195595761 - MER5A DNA MER1_type -32 157 60 320 271 9 20 chr1 47068594 47068730 -195595623 + L1P LINE L1 4866 4999 -1147 2202 123 3 0 chr1 47069094 47069395 -195594958 + AluSx SINE Alu 1 302 -10 2158 192 60 8 chr1 47069420 47069900 -195594453 + MLT1D LTR MaLR 1 505 0 602 304 125 14 chr1 47069965 47070324 -195594029 + L1MC4a LINE L1 5508 5906 -1902 476 211 53 0 chr1 47071233 47071347 -195593006 - MIR3 SINE MIR -7 201 82 552 290 98 14 chr1 47072532 47072746 -195591607 - MIR SINE MIR 0 262 31 439 174 98 23 chr1 47073212 47073344 -195591009 - MLT1J LTR MaLR -369 142 1 418 260 53 47 chr1 47075802 47075952 -195588401 + MIR3 SINE MIR 20 170 -38 530 176 23 15 chr1 47076075 47076206 -195588147 - MER94 DNA DNA -1 133 2 223 261 189 0 chr1 47077876 47077987 -195586366 - MIR SINE MIR -97 165 34 4003 162 18 28 chr1 47084324 47085088 -195579265 + L1MB3 LINE L1 5380 6136 -47 18581 105 17 14 chr1 47085098 47087918 -195576435 + L1P LINE L1 11 2841 -3305 239 35 0 0 chr1 47087914 47087943 -195576410 - L1P1 LINE L1 -678 5477 5449 * 2161 82 21 6 chr1 47087944 47088275 -195576078 + L1PA3 LINE L1 5591 5926 -229 1083 251 236 3 chr1 47088470 47089180 -195575173 + L2 LINE L2 2415 3313 0 1035 302 138 32 chr1 47089903 47090828 -195573525 - L2 LINE L2 -704 2610 1588 225 0 0 0 chr1 47091663 47091688 -195572665 + (TG)n Simple_repeat Simple_repeat 2 26 0 418 252 24 132 chr1 47091695 47091945 -195572408 - HAL1 LINE L1 -5 2502 2280 3516 247 95 56 chr1 47092017 47092993 -195571360 - HAL1 LINE L1 -379 2128 1192 1853 122 0 4 chr1 47092993 47093270 -195571083 - AluSc SINE Alu 0 309 35 3516 247 95 56 chr1 47093270 47093836 -195570517 - HAL1 LINE L1 -1315 1192 650 2241 115 10 16 chr1 47093836 47094150 -195570203 - AluSx SINE Alu 0 312 1 3516 247 95 56 chr1 47094150 47094538 -195569815 - HAL1 LINE L1 -1857 650 100 723 175 6 18 chr1 47094551 47094717 -195569636 + GA-rich Low_complexity Low_complexity 2 165 0 277 288 116 27 chr1 47095006 47095152 -195569201 + MIR SINE MIR 94 252 -10 227 123 53 53 chr1 47095165 47095222 -195569131 + CT-rich Low_complexity Low_complexity 1 57 0 1882 136 7 55 chr1 47095415 47095725 -195568628 + AluJb SINE Alu 1 295 -17 188 160 309 8 chr1 47095958 47096061 -195568292 + MIR SINE MIR 19 142 -119 437 253 185 6 chr1 47096932 47097094 -195567259 + MIR SINE MIR 47 237 -25 684 303 51 17 chr1 47097198 47097432 -195566921 + MIR SINE MIR 21 262 0 260 281 42 31 chr1 47097411 47097507 -195566846 - MIR3 SINE MIR -3 205 109 * 394 202 22 0 chr1 47097816 47097905 -195566448 + L1MC4 LINE L1 7811 7901 -141 374 248 124 0 chr1 47099164 47099293 -195565060 + MIR SINE MIR 38 182 -80 440 275 6 0 chr1 47100194 47100425 -195563928 + (TG)n Simple_repeat Simple_repeat 1 232 0 498 250 0 37 chr1 47100426 47100731 -195563622 + G-rich Low_complexity Low_complexity 1 293 0 * 508 263 6 0 chr1 47100646 47100861 -195563492 + (TG)n Simple_repeat Simple_repeat 1 216 0 249 307 35 54 chr1 47101576 47101724 -195562629 + MIR SINE MIR 26 176 -32 1330 299 64 13 chr1 47105953 47106192 -195558161 - L2 LINE L2 -1017 2297 2072 1932 123 40 35 chr1 47106192 47106565 -195557788 + THE1C LTR MaLR 1 375 0 1330 299 64 13 chr1 47106565 47106856 -195557497 - L2 LINE L2 -1242 2072 1740 421 332 82 20 chr1 47107927 47108231 -195556122 - L2 LINE L2 -818 2496 2174 225 125 25 0 chr1 47108668 47108708 -195555645 - L1ME LINE L1 -241 5923 5883 640 183 44 15 chr1 47108813 47108957 -195555396 + MLT1I LTR MaLR 6 192 -270 261 311 48 19 chr1 47109645 47109748 -195554605 - MIR SINE MIR -108 154 49 387 290 69 14 chr1 47111704 47111849 -195552504 - MIR SINE MIR -51 211 59 286 321 75 0 chr1 47111885 47112019 -195552334 + L2 LINE L2 3169 3312 -1 334 203 13 0 chr1 47112079 47112153 -195552200 - MIR SINE MIR -113 95 21 453 296 114 6 chr1 47112624 47112800 -195551553 + MIR3 SINE MIR 11 205 -3 1110 229 23 16 chr1 47113147 47113405 -195550948 - MIR SINE MIR -1 261 2 544 291 33 0 chr1 47113611 47113762 -195550591 + L3 LINE CR1 1316 1471 -106 552 261 139 14 chr1 47113990 47114205 -195550148 + MIR SINE MIR 8 249 -13 386 319 98 12 chr1 47114609 47114825 -195549528 + MIR SINE MIR 19 248 -14 270 240 11 69 chr1 47115564 47115739 -195548614 + C-rich Low_complexity Low_complexity 6 170 0 412 268 19 0 chr1 47115764 47116090 -195548263 + (CA)n Simple_repeat Simple_repeat 1 332 0 230 169 6 79 chr1 47117100 47117277 -195547076 + GA-rich Low_complexity Low_complexity 2 165 0 400 229 0 58 chr1 47117289 47117477 -195546876 + GA-rich Low_complexity Low_complexity 4 180 0 391 239 0 61 chr1 47117433 47117613 -195546740 + G-rich Low_complexity Low_complexity 4 172 0 * 445 222 0 58 chr1 47117560 47117749 -195546604 + GA-rich Low_complexity Low_complexity 3 180 0 426 232 0 65 chr1 47117673 47117905 -195546448 + G-rich Low_complexity Low_complexity 1 216 0 * 181 200 7 50 chr1 47117924 47118064 -195546289 + GA-rich Low_complexity Low_complexity 3 136 0 477 234 11 43 chr1 47118113 47118297 -195546056 + GA-rich Low_complexity Low_complexity 3 180 0 410 351 148 18 chr1 47119591 47120092 -195544261 + L2 LINE L2 2053 2618 -696 294 322 50 0 chr1 47120810 47120931 -195543422 + MIR3 SINE MIR 7 133 -75 316 283 113 0 chr1 47120969 47121075 -195543278 - MIR SINE MIR -71 191 74 389 269 55 35 chr1 47121662 47121807 -195542546 - MIR SINE MIR -78 184 37 267 319 53 47 chr1 47122014 47122183 -195542170 + L3 LINE CR1 1305 1474 -103 351 264 128 34 chr1 47122506 47122654 -195541699 - Charlie8 DNA MER1_type -2130 287 126 1005 244 31 16 chr1 47122654 47122912 -195541441 - MIR SINE MIR 0 262 1 211 254 0 51 chr1 47122985 47123044 -195541309 - MIR SINE MIR -157 105 50 * 251 306 45 18 chr1 47123026 47123137 -195541216 + MIR3 SINE MIR 83 196 -12 236 316 38 0 chr1 47123868 47123947 -195540406 - L2 LINE L2 -4 3268 3187 395 276 276 11 chr1 47125129 47125412 -195538941 - L3 LINE CR1 -72 1505 1148 351 301 157 19 chr1 47126656 47126872 -195537481 + L3 LINE CR1 1302 1547 -30 292 247 67 34 chr1 47127026 47127115 -195537238 + MIR SINE MIR 8 99 -163 234 306 99 8 chr1 47127480 47127601 -195536752 + L2 LINE L2 2949 3080 -192 647 191 8 6 chr1 47127617 47127755 -195536598 + MIR SINE MIR 14 145 -63 346 228 15 73 chr1 47127755 47127891 -195536462 + L1ME3A LINE L1 6039 6166 -4 310 306 28 0 chr1 47127897 47128005 -195536348 + MIR SINE MIR 148 258 -4 222 282 0 12 chr1 47128498 47128583 -195535770 + GA-rich Low_complexity Low_complexity 1 84 0 215 259 0 0 chr1 47129474 47129532 -195534821 + MIR SINE MIR 75 132 -76 416 299 17 0 chr1 47130247 47130364 -195533989 - MIR SINE MIR -78 184 66 614 275 73 15 chr1 47130878 47131088 -195533265 - MIR SINE MIR -24 238 17 210 296 28 0 chr1 47131115 47131186 -195533167 + MIR SINE MIR 37 109 -99 182 352 0 0 chr1 47131301 47131355 -195532998 + MIR3 SINE MIR 145 198 -10 248 350 0 24 chr1 47131995 47132118 -195532235 + (TCCA)n Simple_repeat Simple_repeat 3 122 0 320 301 70 80 chr1 47132118 47132404 -195531949 - L1MEd LINE L1 -4881 1238 956 277 277 0 50 chr1 47133725 47133844 -195530509 + CT-rich Low_complexity Low_complexity 5 117 0 249 213 21 0 chr1 47133981 47134028 -195530325 + L2 LINE L2 3222 3269 -3 349 324 9 9 chr1 47134043 47134148 -195530205 - MIR SINE MIR -4 258 154 297 322 89 14 chr1 47134724 47134870 -195529483 - MIR SINE MIR -24 238 82 385 311 138 37 chr1 47135030 47135464 -195528889 - L2 LINE L2 0 3313 2836 399 298 21 37 chr1 47135541 47135732 -195528621 - L2 LINE L2 -747 2567 2380 500 253 218 0 chr1 47136291 47136461 -195527892 - MIR SINE MIR -14 248 42 282 314 73 36 chr1 47137811 47137948 -195526405 - MIR SINE MIR -46 216 75 279 0 0 0 chr1 47137962 47137993 -195526360 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 698 260 60 0 chr1 47138011 47138211 -195526142 + MIR SINE MIR 51 262 0 267 368 0 9 chr1 47138218 47138324 -195526029 - MIR SINE MIR -50 212 108 233 276 35 0 chr1 47139442 47139500 -195524853 - L2 LINE L2 -2 3311 3252 2430 144 65 5 chr1 47139588 47139991 -195524362 - MSTA LTR MaLR -1 427 1 320 274 23 46 chr1 47140102 47140277 -195524076 + (CACCAT)n Simple_repeat Simple_repeat 2 172 0 294 234 27 63 chr1 47140716 47140827 -195523526 + MIR SINE MIR 30 136 -72 228 67 0 0 chr1 47142288 47142318 -195522035 + (T)n Simple_repeat Simple_repeat 1 30 0 242 73 24 0 chr1 47145504 47145545 -195518808 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 275 260 110 0 chr1 47145806 47145906 -195518447 - MIR3 SINE MIR -17 191 81 1145 200 17 4 chr1 47145979 47146219 -195518134 - MLT1C LTR MaLR 0 467 225 743 214 40 17 chr1 47146344 47146517 -195517836 + MIR SINE MIR 71 247 -15 280 287 157 0 chr1 47146592 47146707 -195517646 - L2 LINE L2 -8 3305 3173 251 203 0 94 chr1 47146978 47147042 -195517311 + L2 LINE L2 3256 3313 0 183 347 196 9 chr1 47147274 47147591 -195516762 - L2 LINE L2 -1808 1506 1131 581 331 39 19 chr1 47147941 47148252 -195516101 - MLT1I LTR MaLR -2 407 91 372 302 88 26 chr1 47148602 47148794 -195515559 - MIR SINE MIR -24 238 35 228 254 113 0 chr1 47149653 47149724 -195514629 - MIR SINE MIR -98 164 86 222 258 45 0 chr1 47149730 47149796 -195514557 - MIR SINE MIR -147 115 47 268 208 0 0 chr1 47149965 47150018 -195514335 - MIR SINE MIR -69 139 87 231 36 0 0 chr1 47150153 47150181 -195514172 + (CGGG)n Simple_repeat Simple_repeat 2 29 0 407 304 149 6 chr1 47150867 47151028 -195513325 - MIR SINE MIR -70 192 9 602 202 16 8 chr1 47151910 47152039 -195512314 + MIR SINE MIR 27 156 -106 386 290 16 16 chr1 47152088 47152212 -195512141 + MIR SINE MIR 134 257 -5 318 164 0 16 chr1 47152418 47152479 -195511874 + MIR SINE MIR 63 122 -140 223 295 179 0 chr1 47153586 47153681 -195510672 - MIR SINE MIR -44 218 107 753 92 8 25 chr1 47154424 47154544 -195509809 + FRAM SINE Alu 59 176 0 635 226 23 104 chr1 47156008 47156229 -195508124 - MIR SINE MIR -31 231 29 185 241 86 0 chr1 47157389 47157447 -195506906 + L2 LINE L2 3204 3266 -6 278 300 186 0 chr1 47157451 47157621 -195506732 + MIR SINE MIR 21 230 -32 265 316 0 0 chr1 47158201 47158277 -195506076 - MIR SINE MIR -111 151 76 193 241 96 24 chr1 47158458 47158541 -195505812 - MIR SINE MIR -118 144 56 243 221 274 11 chr1 47159148 47159243 -195505110 + MIR SINE MIR 35 154 -108 407 222 67 89 chr1 47159335 47159515 -195504838 + MIR SINE MIR 86 261 -1 197 363 22 22 chr1 47159785 47159920 -195504433 - MIR3 SINE MIR -64 144 10 218 308 77 8 chr1 47159999 47160129 -195504224 - L2 LINE L2 -217 3055 2917 306 0 0 0 chr1 47160557 47160591 -195503762 + (CA)n Simple_repeat Simple_repeat 2 35 0 261 281 12 0 chr1 47162055 47162137 -195502216 + (TGGA)n Simple_repeat Simple_repeat 2 84 0 890 146 6 0 chr1 47162164 47162335 -195502018 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 806 153 6 0 chr1 47162358 47162521 -195501832 + (TGGA)n Simple_repeat Simple_repeat 1 164 0 288 200 0 0 chr1 47162544 47162609 -195501744 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 917 242 25 12 chr1 47162787 47163027 -195501326 + MIR SINE MIR 16 258 -4 250 286 52 0 chr1 47164470 47164547 -195499806 + MIR3 SINE MIR 91 171 -37 239 227 215 61 chr1 47165734 47165897 -195498456 + MIR SINE MIR 69 256 -6 181 238 131 60 chr1 47166734 47166818 -195497535 - MIR SINE MIR -68 140 51 194 164 91 0 chr1 47166927 47166982 -195497371 - MIR SINE MIR -68 140 81 326 272 70 26 chr1 47168286 47168400 -195495953 - MIR SINE MIR -77 185 67 187 237 93 108 chr1 47168467 47168606 -195495747 - MIR SINE MIR 0 262 126 198 0 0 0 chr1 47168989 47169011 -195495342 + (CA)n Simple_repeat Simple_repeat 2 23 0 213 154 0 0 chr1 47169470 47169509 -195494844 + CT-rich Low_complexity Low_complexity 1 39 0 227 333 38 9 chr1 47169936 47170041 -195494312 - MIR SINE MIR -71 137 30 244 366 9 0 chr1 47170111 47170223 -195494130 + MIR SINE MIR 36 148 -60 2216 84 3 7 chr1 47170295 47170594 -195493759 + AluSq SINE Alu 1 298 -15 443 208 164 1 chr1 47171128 47171264 -195493089 - MIR SINE MIR -62 146 3 543 293 18 49 chr1 47171522 47171747 -195492606 + MIR SINE MIR 8 225 -37 218 250 131 77 chr1 47171978 47172146 -195492207 - MIR3 SINE MIR -11 197 21 338 308 19 9 chr1 47173895 47174002 -195490351 + MIR SINE MIR 80 187 -75 1704 168 0 26 chr1 47174240 47174550 -195489803 + AluJo SINE Alu 1 302 -10 560 330 22 6 chr1 47175352 47175531 -195488822 + MER115 DNA AcHobo 9 190 -503 204 276 184 0 chr1 47176068 47176144 -195488209 - L2 LINE L2 -61 3211 3122 718 247 95 18 chr1 47176164 47176384 -195487969 - MIR SINE MIR 0 262 22 332 269 101 8 chr1 47176433 47176552 -195487801 - L2 LINE L2 -213 3059 2930 685 268 30 67 chr1 47177562 47177831 -195486522 - MIR SINE MIR -2 260 2 190 276 26 60 chr1 47178206 47178322 -195486031 - MIR SINE MIR -131 131 20 250 266 40 34 chr1 47178357 47178506 -195485847 + MIR SINE MIR 97 245 -17 210 309 60 0 chr1 47178447 47178531 -195485822 - MIR SINE MIR 0 262 174 * 1098 225 37 128 chr1 47178644 47179240 -195485113 + MER34 LTR ERV1 1 542 0 383 182 0 0 chr1 47179324 47179390 -195484963 - L1MB7 LINE L1 -19 6165 6100 753 198 126 16 chr1 47179390 47179572 -195484781 - MER6B DNA MER2_type -8 202 1 1941 168 14 16 chr1 47179574 47179944 -195484409 - L1MB7 LINE L1 -88 6096 5728 618 250 73 0 chr1 47179951 47180115 -195484238 - MIR SINE MIR -85 177 2 223 301 105 35 chr1 47180463 47180606 -195483747 + MIR3 SINE MIR 16 168 -40 1914 120 10 10 chr1 47180698 47180997 -195483356 + AluSq SINE Alu 1 299 -14 284 324 120 46 chr1 47181038 47181508 -195482845 - L1ME4a LINE L1 -152 5969 5456 252 321 18 37 chr1 47181966 47182075 -195482278 + MIR SINE MIR 41 147 -61 264 280 76 53 chr1 47183605 47183737 -195480616 + L2 LINE L2 3136 3270 -2 201 329 102 15 chr1 47183868 47184005 -195480348 - MIR SINE MIR -12 250 102 845 232 80 33 chr1 47184197 47184473 -195479880 + LTR16C LTR ERVL 203 491 0 604 154 0 0 chr1 47185110 47185201 -195479152 + 5S rRNA rRNA 2 92 -29 227 318 16 0 chr1 47185422 47185485 -195478868 + MIR SINE MIR 81 144 -118 748 228 29 6 chr1 47186056 47186268 -195478085 + L1ME3A LINE L1 5551 5777 -393 949 266 68 0 chr1 47186269 47186577 -195477776 + L1ME3A LINE L1 5825 6153 -17 * 1817 281 36 0 chr1 47186575 47187101 -195477252 - L1ME3A LINE L1 -233 5937 5393 973 259 92 80 chr1 47187103 47187177 -195477176 - LTR16C LTR ERVL 0 491 419 1603 160 55 87 chr1 47187177 47187578 -195476775 - MLT1B LTR MaLR -2 388 1 973 259 92 80 chr1 47187578 47187917 -195476436 - LTR16C LTR ERVL -72 419 73 1876 148 6 6 chr1 47188942 47189253 -195475100 + AluJo SINE Alu 1 311 -1 1241 280 70 20 chr1 47189277 47189737 -195474616 + MLT1K LTR MaLR 106 588 0 810 174 8 0 chr1 47190252 47190384 -195473969 + FLAM_C SINE Alu 1 133 0 19160 58 2 7 chr1 47190504 47193837 -195470516 + L1PA6 LINE L1 2832 6154 0 2089 104 3 7 chr1 47193845 47194143 -195470210 + AluSq SINE Alu 1 297 -16 255 161 0 0 chr1 47194146 47194202 -195470151 + L1MB3 LINE L1 6128 6183 0 331 291 30 22 chr1 47194336 47194470 -195469883 + MIR SINE MIR 84 218 -44 208 333 36 50 chr1 47194564 47194783 -195469570 - L2 LINE L2 -215 3057 2842 411 273 36 0 chr1 47195532 47195642 -195468711 + MIR SINE MIR 70 183 -79 307 250 23 11 chr1 47196003 47196103 -195468250 + MIR SINE MIR 23 124 -84 326 265 2 17 chr1 47196625 47196721 -195467632 - MIR SINE MIR -113 95 2 1197 132 0 0 chr1 47196851 47197466 -195466887 + (TGG)n Simple_repeat Simple_repeat 1 615 0 2129 96 3 7 chr1 47197574 47197877 -195466476 - AluSc SINE Alu -7 302 1 294 305 174 18 chr1 47198067 47198234 -195466119 - MIR3 SINE MIR -15 193 1 253 255 20 31 chr1 47199283 47199381 -195464972 - MIR3 SINE MIR -111 97 1 762 272 199 35 chr1 47199924 47201150 -195463203 + L2 LINE L2 1797 3239 -33 561 283 69 0 chr1 47201784 47201943 -195462410 + MIR SINE MIR 31 200 -62 700 135 0 75 chr1 47201953 47202086 -195462267 + FLAM_A SINE Alu 13 135 -7 191 309 143 8 chr1 47202172 47202298 -195462055 + L2 LINE L2 3121 3263 -9 546 243 35 79 chr1 47202866 47202981 -195461372 + MIR SINE MIR 1 105 -157 2361 74 3 3 chr1 47202981 47203291 -195461062 - AluY SINE Alu -1 310 1 546 243 35 79 chr1 47203291 47203377 -195460976 + MIR SINE MIR 105 193 -69 554 192 0 19 chr1 47203924 47204028 -195460325 + FRAM SINE Alu 55 156 -20 310 358 22 8 chr1 47204056 47204190 -195460163 + L1MC4a LINE L1 5797 5932 -1876 1475 158 20 56 chr1 47204269 47204415 -195459938 + AluJb SINE Alu 1 132 -180 1516 100 0 0 chr1 47204415 47204615 -195459738 + AluSc SINE Alu 1 200 -109 1475 158 20 56 chr1 47204615 47204772 -195459581 + AluJb SINE Alu 132 293 -19 783 262 83 31 chr1 47205307 47205722 -195458631 + MLT1D LTR MaLR 2 467 0 231 276 122 20 chr1 47206235 47206333 -195458020 + MLT1L LTR MaLR 93 200 -415 241 207 115 35 chr1 47206365 47206452 -195457901 + MLT1L LTR MaLR 189 282 -333 262 304 56 8 chr1 47206588 47206713 -195457640 + MLT1L LTR MaLR 478 608 -7 633 175 100 19 chr1 47208577 47208737 -195455616 + L2 LINE L2 3128 3300 -13 250 340 134 47 chr1 47208896 47209149 -195455204 + L2 LINE L2 2997 3271 -1 192 200 0 0 chr1 47209163 47209208 -195455145 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 573 109 40 0 chr1 47210279 47210380 -195453973 + MER20 DNA MER1_type 115 219 0 473 277 196 5 chr1 47210425 47210609 -195453744 - MIR SINE MIR -8 254 36 647 248 78 5 chr1 47211206 47211412 -195452941 - L2 LINE L2 0 3313 3093 388 295 25 8 chr1 47211437 47211559 -195452794 - MIR SINE MIR -66 142 19 322 284 0 0 chr1 47211644 47211718 -195452635 - MIR SINE MIR -81 181 108 2662 43 0 0 chr1 47261827 47262126 -195402227 + AluY SINE Alu 1 299 -12 473 291 77 7 chr1 47262333 47262529 -195401824 - MIR SINE MIR -57 205 3 391 206 214 8 chr1 47263309 47263435 -195400918 + MIR SINE MIR 14 165 -97 229 263 27 38 chr1 47263611 47263729 -195400624 + MIR SINE MIR 15 129 -79 699 244 67 5 chr1 47264603 47264811 -195399542 + MIR SINE MIR 23 243 -19 557 292 65 16 chr1 47266489 47266674 -195397679 + MIR SINE MIR 21 214 -48 1005 216 5 46 chr1 47266716 47266934 -195397419 - MER63A DNA MER1_type 0 210 2 1915 166 0 25 chr1 47267004 47267286 -195397067 + AluJo SINE Alu 1 275 -71 198 0 0 0 chr1 47267286 47267308 -195397045 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1915 166 0 25 chr1 47267308 47267379 -195396974 + AluJo SINE Alu 275 346 0 186 43 0 0 chr1 47268586 47268609 -195395744 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 638 306 148 7 chr1 47268611 47268902 -195395451 - L2 LINE L2 -13 3300 2969 464 237 65 33 chr1 47268926 47269141 -195395212 - L2 LINE L2 -467 2847 2626 289 244 89 41 chr1 47269765 47269888 -195394465 + MIR SINE MIR 8 136 -126 302 304 82 23 chr1 47270095 47270200 -195394153 - MIR3 SINE MIR -19 189 75 319 257 83 9 chr1 47270200 47270309 -195394044 + MIR3 SINE MIR 2 118 -90 2036 104 8 4 chr1 47270706 47271005 -195393348 + AluSx SINE Alu 22 321 0 400 257 117 35 chr1 47271032 47271203 -195393150 + MIR SINE MIR 71 255 -7 240 319 88 8 chr1 47271697 47271864 -195392489 + MIR SINE MIR 2 177 -58 387 295 115 14 chr1 47271965 47272182 -195392171 - MIR SINE MIR -4 258 20 204 250 36 0 chr1 47272449 47272505 -195391848 + MIR SINE MIR 89 146 -62 415 266 122 67 chr1 47273290 47273617 -195390736 - L2 LINE L2 -1037 2277 1933 257 274 75 28 chr1 47273832 47273938 -195390415 + MIR SINE MIR 81 191 -71 2520 71 7 0 chr1 47274120 47274429 -195389924 + AluY SINE Alu 1 311 0 259 306 56 19 chr1 47274810 47274918 -195389435 - MIR SINE MIR -70 192 81 267 379 52 0 chr1 47275503 47275619 -195388734 - MIR3 SINE MIR -54 154 33 277 284 12 0 chr1 47275729 47275810 -195388543 + MER33 DNA MER1_type 3 84 -240 897 181 0 0 chr1 47275918 47276062 -195388291 - FRAM SINE Alu -39 137 1 321 239 0 0 chr1 47276063 47276130 -195388223 + MER33 DNA MER1_type 295 361 -2 197 391 26 0 chr1 47276163 47276278 -195388075 + L3 LINE CR1 1058 1175 -402 764 279 93 8 chr1 47276332 47276569 -195387784 + L3 LINE CR1 1166 1422 -155 571 267 109 45 chr1 47276771 47276992 -195387361 - MIR SINE MIR 0 262 28 602 268 43 0 chr1 47277483 47277647 -195386706 + MIR SINE MIR 63 233 -29 300 286 118 17 chr1 47277768 47277887 -195386466 + L2 LINE L2 3143 3273 -40 204 294 35 35 chr1 47277893 47277978 -195386375 + MIR SINE MIR 13 97 -165 309 270 212 7 chr1 47277985 47278122 -195386231 - MIR SINE MIR -2 260 96 534 108 12 0 chr1 47278123 47278206 -195386147 + MLT2F LTR ERVL 1 84 -579 329 89 0 0 chr1 47278204 47278249 -195386104 + MLT2F LTR ERVL 619 663 0 * 752 247 46 21 chr1 47278380 47278574 -195385779 - MIR SINE MIR -61 201 3 288 200 71 24 chr1 47278598 47278683 -195385670 + MIR SINE MIR 102 190 -72 6469 229 54 40 chr1 47278701 47279500 -195384853 + L1MEc LINE L1 43 829 -5386 1960 126 44 4 chr1 47279500 47279795 -195384558 + AluSx SINE Alu 1 306 0 6469 229 54 40 chr1 47279795 47281243 -195383110 + L1MEc LINE L1 829 2342 -3873 1919 139 66 0 chr1 47281243 47281530 -195382823 + AluSx SINE Alu 1 306 -6 6469 229 54 40 chr1 47281530 47282482 -195381871 + L1MEc LINE L1 2342 3279 -2936 301 296 139 9 chr1 47282542 47282650 -195381703 + MIR SINE MIR 21 142 -120 322 218 10 2 chr1 47282688 47282763 -195381590 + L1MB3 LINE L1 5582 5659 -462 3394 163 30 18 chr1 47282771 47283441 -195380912 - L1MB8 LINE L1 0 6178 5501 453 176 78 59 chr1 47283449 47283602 -195380751 + MLT1A2 LTR MaLR 6 161 -213 2863 161 14 4 chr1 47283604 47284101 -195380252 + L1MB3 LINE L1 5679 6180 -3 21 89 0 0 chr1 47284367 47284423 -195379930 + AT_rich Low_complexity Low_complexity 1 56 0 866 191 6 14 chr1 47284477 47284684 -195379669 + MLT1A2 LTR MaLR 187 374 0 981 122 87 10 chr1 47284684 47284880 -195379473 - L1MB8 LINE L1 -688 5496 5286 700 266 131 47 chr1 47284880 47285184 -195379169 + L1MC4a LINE L1 5648 6010 -1798 2270 95 3 58 chr1 47285184 47285511 -195378842 - AluSc SINE Alu 0 309 1 700 266 131 47 chr1 47285511 47285695 -195378658 + L1MC4a LINE L1 6010 6177 -1631 309 256 69 95 chr1 47285815 47286104 -195378249 - MLT1K LTR MaLR -239 349 2 353 244 83 98 chr1 47286161 47286343 -195378010 - L2 LINE L2 -174 3098 2915 1966 147 17 95 chr1 47286343 47286374 -195377979 + MLT1B LTR MaLR 2 34 -356 2418 100 0 13 chr1 47286374 47286685 -195377668 - AluSx SINE Alu -5 307 1 1966 147 17 95 chr1 47286685 47286814 -195377539 + MLT1B LTR MaLR 34 172 -218 207 0 0 0 chr1 47286814 47286837 -195377516 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2049 138 0 3 chr1 47286839 47287122 -195377231 - AluSx SINE Alu -30 282 1 1966 147 17 95 chr1 47287122 47287379 -195376974 + MLT1B LTR MaLR 173 390 0 353 244 83 98 chr1 47287379 47287401 -195376952 - L2 LINE L2 -357 2915 2897 1029 239 36 5 chr1 47287519 47287741 -195376612 - MIR SINE MIR 0 262 34 232 233 0 0 chr1 47288230 47288273 -195376080 + polypyrimidine Low_complexity Low_complexity 3 45 0 275 275 0 0 chr1 47289004 47289073 -195375280 + MIR SINE MIR 183 251 -11 198 167 0 0 chr1 47290975 47291011 -195373342 + (CA)n Simple_repeat Simple_repeat 1 36 0 213 275 92 8 chr1 47291154 47291274 -195373079 + L2 LINE L2 2850 2979 -293 275 274 216 0 chr1 47291736 47291838 -195372515 - MIR SINE MIR -14 248 125 617 283 114 0 chr1 47291894 47292113 -195372240 + MIR SINE MIR 14 257 -5 904 268 48 75 chr1 47292155 47292348 -195372005 + L2 LINE L2 2015 2212 -1102 1487 167 72 0 chr1 47292348 47292701 -195371652 - AluJb SINE Alu 0 373 2 904 268 48 75 chr1 47292701 47292945 -195371408 + L2 LINE L2 2212 2442 -872 1279 156 55 9 chr1 47292947 47293187 -195371166 + AluSg/x SINE Alu 83 312 0 666 264 11 19 chr1 47293195 47293567 -195370786 + MLT1G LTR MaLR 143 584 -6 626 234 117 0 chr1 47293574 47293771 -195370582 - L1M4 LINE L1 -2490 3656 3437 412 296 33 7 chr1 47293774 47293926 -195370427 + L2 LINE L2 2689 2844 -470 201 74 0 0 chr1 47293967 47293994 -195370359 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 919 129 0 0 chr1 47294019 47294143 -195370210 - FRAM SINE Alu -27 149 26 456 302 81 61 chr1 47294148 47294443 -195369910 + L2 LINE L2 3005 3305 -8 395 263 18 0 chr1 47294853 47294976 -195369377 - MIR SINE MIR -55 153 22 251 300 50 0 chr1 47295352 47295432 -195368921 + MIR SINE MIR 100 183 -79 298 265 46 59 chr1 47295794 47295957 -195368396 - MIR3 SINE MIR -14 194 34 261 277 15 0 chr1 47296104 47296169 -195368184 + MIR3 SINE MIR 114 179 -29 2559 63 3 0 chr1 47296536 47296835 -195367518 + AluSp SINE Alu 1 300 -13 384 300 6 71 chr1 47297652 47297822 -195366531 + MIR3 SINE MIR 33 191 -17 265 329 0 0 chr1 47298114 47298190 -195366163 + MIR SINE MIR 73 148 -114 320 277 9 54 chr1 47299499 47299611 -195364742 + MIR SINE MIR 43 149 -59 284 326 135 17 chr1 47299656 47299834 -195364519 + MIR SINE MIR 10 208 -54 216 0 0 0 chr1 47299950 47299974 -195364379 + (T)n Simple_repeat Simple_repeat 1 24 0 311 209 77 11 chr1 47300255 47300346 -195364007 - L2 LINE L2 -635 2679 2583 1436 256 68 40 chr1 47300356 47300888 -195363465 - L2 LINE L2 -841 2473 1927 2747 137 17 20 chr1 47301758 47302218 -195362135 + LTR32 LTR ERVL 13 471 0 706 323 107 18 chr1 47302802 47303130 -195361223 - L3 LINE CR1 -8 1569 1213 270 0 0 0 chr1 47303865 47303895 -195360458 + (TG)n Simple_repeat Simple_repeat 2 31 0 261 291 0 25 chr1 47304584 47304663 -195359690 + MIR SINE MIR 17 93 -115 219 286 286 0 chr1 47304829 47304941 -195359412 - L3 LINE CR1 -10 1567 1424 236 204 19 0 chr1 47305395 47305449 -195358904 + MLT1H1 LTR MaLR 29 83 -459 634 215 118 40 chr1 47305546 47305874 -195358479 + MLT1H1 LTR MaLR 245 550 -5 290 304 144 32 chr1 47306190 47306529 -195357824 + HAL1 LINE L1 811 1187 -1320 312 346 48 29 chr1 47306530 47306738 -195357615 + L1M4c LINE L1 1248 1459 -4925 317 282 68 6 chr1 47306757 47306920 -195357433 + HAL1 LINE L1 1572 1744 -763 538 254 70 106 chr1 47307214 47307501 -195356852 + L1M4c LINE L1 2296 2541 -3841 2173 115 44 0 chr1 47307501 47307797 -195356556 + AluSg SINE Alu 1 309 -1 538 254 70 106 chr1 47307797 47307977 -195356376 + L1M4c LINE L1 2541 2726 -3656 452 295 97 40 chr1 47308165 47308793 -195355560 + L1M4c LINE L1 2783 3446 -2936 949 294 114 15 chr1 47309028 47309494 -195354859 + MLT1K LTR MaLR 2 513 -75 462 321 42 55 chr1 47309514 47309822 -195354531 + L1M4c LINE L1 3867 4170 -2212 1343 222 69 32 chr1 47309845 47310223 -195354130 + MLT2C1 LTR ERVL 4 395 -2 1806 145 125 55 chr1 47310337 47310696 -195353657 - MSTA LTR MaLR 0 428 37 2807 98 16 0 chr1 47310696 47311064 -195353289 + THE1C LTR MaLR 1 374 -1 1806 145 125 55 chr1 47311064 47311104 -195353249 - MSTA LTR MaLR -391 37 1 1115 201 71 31 chr1 47311142 47311565 -195352788 + MLT1D LTR MaLR 10 505 0 764 292 64 19 chr1 47311565 47311912 -195352441 - L2 LINE L2 -278 3035 2678 1552 252 81 8 chr1 47311919 47312300 -195352053 + MER69 DNA AcHobo 3 411 -815 1387 176 41 72 chr1 47312300 47312599 -195351754 + MER69 DNA AcHobo 1920 2202 -324 2108 118 0 16 chr1 47312599 47312905 -195351448 + AluSx SINE Alu 1 301 -11 1387 176 41 72 chr1 47312905 47313047 -195351306 + MER69 DNA AcHobo 2202 2347 -179 582 211 48 24 chr1 47313153 47313361 -195350992 + MER69 DNA AcHobo 2314 2526 0 965 253 141 33 chr1 47313415 47313869 -195350484 + LTR33A LTR ERVL 17 519 -4 2150 239 166 28 chr1 47313872 47314699 -195349654 - L2 LINE L2 -652 2662 1722 221 176 0 20 chr1 47314733 47314784 -195349569 + (CATA)n Simple_repeat Simple_repeat 3 52 0 889 253 59 27 chr1 47314785 47315150 -195349203 - L1ME3A LINE L1 -4 6166 5760 1817 131 0 4 chr1 47315150 47315424 -195348929 - AluSx SINE Alu -1 311 39 889 253 59 27 chr1 47315424 47315600 -195348753 - L1ME3A LINE L1 -410 5760 5591 8966 90 10 7 chr1 47315600 47316855 -195347498 + HSMAR1 DNA Mariner 25 1282 -5 737 256 70 13 chr1 47316856 47317086 -195347267 - L1ME3A LINE L1 -595 5569 5327 1782 270 89 11 chr1 47317086 47317652 -195346701 - L2 LINE L2 -1975 1339 716 1611 156 150 47 chr1 47317652 47317730 -195346623 - MSTD LTR MaLR 0 396 327 2022 122 7 3 chr1 47317730 47318025 -195346328 + AluSx SINE Alu 9 304 -8 1611 156 150 47 chr1 47318025 47318305 -195346048 - MSTD LTR MaLR -69 327 1 1782 270 89 11 chr1 47318305 47318378 -195345975 - L2 LINE L2 -2598 716 650 256 356 28 5 chr1 47318506 47318722 -195345631 + L1MC4a LINE L1 4883 5103 -1043 732 236 39 11 chr1 47318744 47318922 -195345431 - MIR SINE MIR -2 260 78 819 164 34 0 chr1 47319054 47319200 -195345153 - L1MA10 LINE L1 0 6334 6184 246 241 129 9 chr1 47319241 47319357 -195344996 + L1P LINE L1 5270 5399 -767 1715 153 0 0 chr1 47319358 47319613 -195344740 + AluSx SINE Alu 26 280 -32 447 258 133 127 chr1 47319639 47319762 -195344591 + L1MC4a LINE L1 5382 5503 -2305 2351 71 0 0 chr1 47319762 47320057 -195344296 + AluY SINE Alu 1 295 -16 447 258 133 127 chr1 47320057 47320399 -195343954 + L1MC4a LINE L1 5503 5850 -1958 220 296 56 69 chr1 47320593 47320775 -195343578 - L2 LINE L2 -70 3243 2993 1781 149 0 36 chr1 47320775 47321083 -195343270 + AluJo SINE Alu 5 301 -11 220 296 56 69 chr1 47321083 47321194 -195343159 - L2 LINE L2 -320 2993 2882 1874 232 38 24 chr1 47321273 47321769 -195342584 - L1ME1 LINE L1 -14 6152 5650 210 330 0 0 chr1 47322338 47322444 -195341909 + (CA)n Simple_repeat Simple_repeat 2 107 0 209 279 218 20 chr1 47323034 47323181 -195341172 - MIR SINE MIR -72 190 15 225 257 14 14 chr1 47323815 47323885 -195340468 - MIR3 SINE MIR -48 160 91 355 252 32 49 chr1 47323906 47324029 -195340324 + MIR SINE MIR 24 144 -118 444 320 92 15 chr1 47324173 47324406 -195339947 + MIR SINE MIR 5 250 -12 339 214 20 31 chr1 47324442 47324540 -195339813 - MARNA DNA Mariner -198 388 292 256 254 84 14 chr1 47324800 47324871 -195339482 - MIR3 SINE MIR -16 192 117 205 258 100 12 chr1 47324926 47325099 -195339254 - MIR3 SINE MIR -15 193 37 217 186 85 0 chr1 47325363 47325422 -195338931 + MIR SINE MIR 86 149 -59 199 297 54 14 chr1 47325865 47325939 -195338414 - MIR SINE MIR -115 93 17 2110 107 0 0 chr1 47326010 47326299 -195338054 + AluSx SINE Alu 1 289 -23 834 129 0 8 chr1 47326299 47326423 -195337930 + FLAM_C SINE Alu 1 123 -20 314 23 0 23 chr1 47326594 47326638 -195337715 + (TTAGGG)n Simple_repeat Simple_repeat 6 48 0 512 257 226 53 chr1 47326852 47327345 -195337008 + L2 LINE L2 2722 3313 0 981 178 112 0 chr1 47328091 47328288 -195336065 + MER20 DNA MER1_type 1 219 0 258 257 146 49 chr1 47328627 47328771 -195335582 + MIR SINE MIR 28 185 -77 324 352 123 30 chr1 47329304 47329481 -195334872 + L2 LINE L2 2821 2980 -292 935 201 94 24 chr1 47329481 47329616 -195334737 - ORSL DNA AcHobo -3 272 148 2013 131 3 0 chr1 47329616 47329906 -195334447 + AluSx SINE Alu 1 291 -21 935 201 94 24 chr1 47329906 47329963 -195334390 - ORSL DNA AcHobo -127 148 96 330 67 0 0 chr1 47329963 47330008 -195334345 + (TG)n Simple_repeat Simple_repeat 2 46 0 935 201 94 24 chr1 47330008 47330068 -195334285 - ORSL DNA AcHobo -179 96 1 324 352 123 30 chr1 47330068 47330296 -195334057 + L2 LINE L2 2980 3264 -8 329 257 10 59 chr1 47330396 47330497 -195333856 - L2 LINE L2 -18 3295 3200 226 289 44 22 chr1 47330957 47331047 -195333306 + MIR SINE MIR 49 140 -68 1824 214 54 14 chr1 47331273 47331699 -195332654 - LTR47B LTR ERVL 0 443 1 703 246 23 0 chr1 47331933 47332104 -195332249 - MIR SINE MIR 0 262 88 305 148 37 28 chr1 47332928 47333036 -195331317 + (CA)n Simple_repeat Simple_repeat 1 109 0 471 84 56 56 chr1 47333062 47333241 -195331112 + (CA)n Simple_repeat Simple_repeat 1 179 0 194 141 65 11 chr1 47333261 47333353 -195331000 + (CA)n Simple_repeat Simple_repeat 2 98 0 231 238 89 40 chr1 47334280 47334381 -195329972 - MIR SINE MIR -96 166 61 226 270 0 22 chr1 47335043 47335132 -195329221 + C-rich Low_complexity Low_complexity 3 89 0 980 116 5 95 chr1 47335662 47335851 -195328502 + AluJo SINE Alu 85 256 -56 1742 114 71 7 chr1 47335851 47336131 -195328222 + AluSg SINE Alu 13 310 0 194 345 95 15 chr1 47336155 47336355 -195327998 + L2 LINE L2 1733 1948 -1366 516 205 8 33 chr1 47336372 47336494 -195327859 - MIR SINE MIR -80 182 64 210 333 45 0 chr1 47336646 47336712 -195327641 + MIR SINE MIR 193 261 -1 217 159 32 32 chr1 47336725 47336788 -195327565 + (CATA)n Simple_repeat Simple_repeat 4 66 0 317 276 92 8 chr1 47337615 47337791 -195326562 + MIR SINE MIR 20 254 -8 * 584 272 15 48 chr1 47337755 47337961 -195326392 - MIR SINE MIR -33 229 31 234 226 32 16 chr1 47338002 47338064 -195326289 + GA-rich Low_complexity Low_complexity 5 67 0 1648 136 29 45 chr1 47339715 47340025 -195324328 - AluJo SINE Alu -7 305 1 195 291 0 0 chr1 47340208 47340263 -195324090 + MIR SINE MIR 83 137 -71 233 275 25 38 chr1 47340773 47340853 -195323500 + A-rich Low_complexity Low_complexity 4 82 0 313 335 128 48 chr1 47340853 47341205 -195323148 - L1M4c LINE L1 -4181 2203 1824 320 363 47 16 chr1 47343037 47343230 -195321123 + MIR3 SINE MIR 1 199 -9 235 270 16 16 chr1 47343317 47343380 -195320973 + MIR SINE MIR 28 90 -172 359 340 82 31 chr1 47343733 47344024 -195320329 - L2 LINE L2 -4 3268 2963 235 342 17 0 chr1 47345730 47345847 -195318506 - MIR SINE MIR -57 205 87 279 0 0 0 chr1 47345946 47345977 -195318376 + (TG)n Simple_repeat Simple_repeat 2 32 0 283 333 136 8 chr1 47346676 47346808 -195317545 + MIR3 SINE MIR 36 184 -24 187 296 42 70 chr1 47346851 47346993 -195317360 - L2 LINE L2 -212 3060 2923 305 370 0 0 chr1 47347118 47347226 -195317127 + L2 LINE L2 3204 3311 -2 760 186 108 6 chr1 47347308 47347475 -195316878 + MER5A DNA MER1_type 1 184 -5 202 242 48 16 chr1 47347541 47347603 -195316750 - MIR3 SINE MIR -134 74 11 26 50 0 0 chr1 47347845 47347885 -195316468 + AT_rich Low_complexity Low_complexity 1 40 0 1351 239 53 102 chr1 47348008 47348576 -195315777 + MLT1F LTR MaLR 3 542 0 2052 108 7 0 chr1 47349182 47349461 -195314892 + AluSq SINE Alu 1 281 -32 288 0 0 0 chr1 47349462 47349494 -195314859 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 338 264 36 50 chr1 47349957 47350097 -195314256 - L2 LINE L2 0 3313 3176 180 204 0 0 chr1 47350567 47350611 -195313742 + MIR SINE MIR 90 133 -75 584 249 81 32 chr1 47351147 47351368 -195312985 - L1ME3 LINE L1 0 6162 5931 180 222 0 0 chr1 47351379 47351415 -195312938 + L2 LINE L2 3182 3217 -96 407 301 0 0 chr1 47351780 47351883 -195312470 + MIR3 SINE MIR 85 187 -21 251 223 21 6 chr1 47351997 47352091 -195312262 + MIR SINE MIR 8 155 -107 263 192 33 15 chr1 47352556 47352630 -195311723 - MIR SINE MIR -63 145 76 402 225 53 107 chr1 47353610 47353779 -195310574 + MIR SINE MIR 29 188 -74 212 254 28 28 chr1 47355311 47355382 -195308971 + MIR SINE MIR 49 119 -143 297 338 52 0 chr1 47355562 47355716 -195308637 + (CATG)n Simple_repeat Simple_repeat 3 164 0 237 357 7 19 chr1 47355640 47355794 -195308559 + (TG)n Simple_repeat Simple_repeat 1 152 0 * 349 286 61 14 chr1 47356144 47356291 -195308062 - MIR SINE MIR -48 214 61 441 287 186 34 chr1 47356787 47357115 -195307238 + L2 LINE L2 2935 3312 -1 2030 129 3 0 chr1 47357364 47357675 -195306678 - AluSx SINE Alu 0 312 1 180 385 52 0 chr1 47359086 47359182 -195305171 - MIR SINE MIR -80 128 28 419 314 16 0 chr1 47359891 47360015 -195304338 + L2 LINE L2 3188 3313 0 290 209 47 47 chr1 47360026 47360112 -195304241 - MIR SINE MIR -82 180 95 321 208 0 28 chr1 47360177 47360249 -195304104 + MIR3 SINE MIR 87 156 -52 1922 203 31 61 chr1 47360433 47360910 -195303443 - MLT1C LTR MaLR 0 467 5 303 300 113 33 chr1 47360940 47361090 -195303263 + MIR SINE MIR 32 193 -69 292 231 161 46 chr1 47361218 47361348 -195303005 + MIR3 SINE MIR 43 187 -21 275 305 123 6 chr1 47361638 47361770 -195302583 + MIR SINE MIR 56 197 -62 377 229 128 0 chr1 47362014 47362123 -195302230 - MIR SINE MIR -24 238 116 1917 174 48 8 chr1 47362176 47362527 -195301826 + MLT1A1 LTR MaLR 1 365 0 253 299 146 0 chr1 47362550 47362694 -195301659 - MIR SINE MIR -21 241 77 324 343 110 0 chr1 47363343 47363489 -195300864 + MIR SINE MIR 21 182 -80 213 39 0 0 chr1 47363489 47363515 -195300838 + (TAA)n Simple_repeat Simple_repeat 3 28 0 784 100 0 0 chr1 47363520 47363620 -195300733 + AluS SINE Alu 2 101 -211 638 139 120 0 chr1 47363619 47363727 -195300626 + AluJb SINE Alu 15 135 -177 * 1513 173 60 3 chr1 47363729 47364012 -195300341 + AluSg SINE Alu 2 300 0 330 265 73 33 chr1 47364020 47364171 -195300182 - MIR SINE MIR 0 262 106 222 238 0 0 chr1 47364167 47364209 -195300144 + MIR SINE MIR 218 259 -3 * 213 258 137 14 chr1 47364413 47364530 -195299823 + MIR SINE MIR 18 157 -71 1743 194 137 43 chr1 47365135 47365167 -195299186 - MLT2B1 LTR ERVL -8 512 484 598 65 11 11 chr1 47365167 47365260 -195299093 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 1743 194 137 43 chr1 47365260 47365695 -195298658 - MLT2B1 LTR ERVL -36 484 1 1849 132 38 7 chr1 47366009 47366298 -195298055 + AluJb SINE Alu 1 298 -14 365 316 71 61 chr1 47366552 47366764 -195297589 + HAL1b LINE L1 1119 1332 -16 219 320 53 0 chr1 47367390 47367465 -195296888 + MIR SINE MIR 117 195 -67 563 289 134 0 chr1 47367653 47367854 -195296499 + MIR SINE MIR 14 241 -21 1779 185 30 0 chr1 47368147 47368450 -195295903 + AluJb SINE Alu 1 312 0 254 340 46 46 chr1 47368537 47368778 -195295575 + MIR SINE MIR 22 262 0 509 239 54 88 chr1 47368889 47369021 -195295332 + MIR SINE MIR 20 144 -118 2166 104 0 13 chr1 47369021 47369330 -195295023 + AluSx SINE Alu 1 305 -7 509 239 54 88 chr1 47369330 47369402 -195294951 + MIR SINE MIR 144 217 -45 1545 98 4 17 chr1 47369783 47370017 -195294336 + L1P4 LINE L1 5519 5749 -419 1660 146 9 57 chr1 47370176 47370492 -195293861 + AluJb SINE Alu 1 301 -11 494 334 149 16 chr1 47370494 47370996 -195293357 + L2 LINE L2 2703 3270 -2 283 334 113 0 chr1 47371893 47372078 -195292275 + MIR SINE MIR 16 223 -39 180 0 0 0 chr1 47372104 47372124 -195292229 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 386 255 43 0 chr1 47372124 47372218 -195292135 - L2 LINE L2 -13 3300 3203 747 303 93 33 chr1 47372278 47372611 -195291742 - MLT1I LTR MaLR -54 355 3 258 272 195 18 chr1 47372626 47372936 -195291417 - L2 LINE L2 -177 3136 2753 654 267 106 0 chr1 47372997 47373177 -195291176 + MIR SINE MIR 64 262 0 357 335 128 11 chr1 47374008 47374196 -195290157 - MIR SINE MIR -35 227 18 332 262 25 57 chr1 47374529 47374651 -195289702 + MIR3 SINE MIR 43 160 -48 313 271 208 7 chr1 47376371 47376515 -195287838 + MIR SINE MIR 20 192 -70 196 316 13 66 chr1 47377241 47377317 -195287036 + MIR3 SINE MIR 90 161 -47 370 269 123 41 chr1 47377527 47377698 -195286655 - L2 LINE L2 0 3313 3129 294 336 74 69 chr1 47377879 47378257 -195286096 - L2 LINE L2 -468 2846 2467 1651 176 0 34 chr1 47378293 47378616 -195285737 - AluJb SINE Alu 0 312 1 267 279 25 0 chr1 47378807 47378886 -195285467 - MLT1K LTR MaLR -8 580 500 255 262 97 19 chr1 47379297 47379400 -195284953 - MLT1K LTR MaLR -290 298 188 237 131 66 16 chr1 47379745 47379806 -195284547 + (GGGTG)n Simple_repeat Simple_repeat 3 66 0 275 284 0 45 chr1 47379962 47380051 -195284302 + MIR SINE MIR 63 148 -60 847 145 8 0 chr1 47380055 47380186 -195284167 + AluJo SINE Alu 3 134 -178 1929 145 7 0 chr1 47380290 47380586 -195283767 + AluJb SINE Alu 1 298 -14 190 0 32 32 chr1 47380591 47380622 -195283731 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 461 275 14 50 chr1 47380819 47380908 -195283445 - MIR SINE MIR -15 247 156 1911 215 133 10 chr1 47380908 47381396 -195282957 - MLT1H LTR MaLR 0 549 2 461 275 14 50 chr1 47381396 47381516 -195282837 - MIR SINE MIR -106 156 44 278 264 143 0 chr1 47383366 47383457 -195280896 - L2 LINE L2 0 3313 3210 1717 134 37 0 chr1 47383903 47384229 -195280124 + AluSg SINE Alu 1 336 0 325 190 76 13 chr1 47384235 47384314 -195280039 - MLT1K LTR MaLR -331 257 174 343 265 41 0 chr1 47384427 47384525 -195279828 + MIR SINE MIR 117 218 -44 402 275 76 30 chr1 47384814 47384986 -195279367 + MIR SINE MIR 6 179 -41 289 282 92 73 chr1 47385096 47385369 -195278984 - L2 LINE L2 -50 3222 2945 210 241 12 12 chr1 47385529 47385612 -195278741 + (TG)n Simple_repeat Simple_repeat 2 84 0 270 322 7 7 chr1 47385697 47385840 -195278513 + (TG)n Simple_repeat Simple_repeat 2 144 0 270 0 0 0 chr1 47385923 47385953 -195278400 + (CA)n Simple_repeat Simple_repeat 2 31 0 371 21 21 0 chr1 47387264 47387312 -195277041 + (TC)n Simple_repeat Simple_repeat 2 50 0 227 301 14 0 chr1 47387906 47387979 -195276374 + MIR SINE MIR 118 191 -71 2176 116 0 0 chr1 47388187 47388490 -195275863 + AluSx SINE Alu 1 303 -9 308 324 117 0 chr1 47388494 47388639 -195275714 + MIR SINE MIR 100 261 -1 319 246 78 27 chr1 47388835 47388996 -195275357 + MIR SINE MIR 8 176 -62 222 164 0 0 chr1 47389282 47389337 -195275016 + (CA)n Simple_repeat Simple_repeat 1 55 0 343 360 124 0 chr1 47389491 47389669 -195274684 - L3 LINE CR1 -117 1460 1261 192 274 36 24 chr1 47389730 47389814 -195274539 + L2 LINE L2 2859 2943 -371 193 270 63 0 chr1 47390028 47390091 -195274262 + L2 LINE L2 3200 3266 -6 369 323 76 25 chr1 47390412 47390570 -195273783 - MIR SINE MIR -68 194 29 193 316 116 0 chr1 47390730 47390825 -195273528 - MIR SINE MIR -52 210 105 510 234 16 8 chr1 47390965 47391089 -195273264 - MIR SINE MIR -72 190 66 185 281 157 11 chr1 47392704 47392793 -195271560 - MIR SINE MIR -114 148 47 384 242 229 0 chr1 47392914 47393071 -195271282 + MIR SINE MIR 2 194 -68 227 330 72 0 chr1 47393188 47393285 -195271068 + L2 LINE L2 3168 3271 -1 512 204 152 43 chr1 47393628 47393818 -195270535 + MLT1B LTR MaLR 1 194 -171 287 217 43 0 chr1 47393868 47393937 -195270416 + MLT1B LTR MaLR 299 370 -20 187 218 109 0 chr1 47393948 47394003 -195270350 - MIR SINE MIR -159 103 43 256 257 150 18 chr1 47394814 47394927 -195269426 + MIR SINE MIR 20 147 -61 195 350 43 17 chr1 47395247 47395364 -195268989 + MIR SINE MIR 35 154 -108 325 313 121 22 chr1 47397188 47397699 -195266654 + L1ME4a LINE L1 4908 5492 -821 1805 151 4 0 chr1 47397699 47398007 -195266346 - AluSx SINE Alu 0 311 3 325 313 121 22 chr1 47398007 47398063 -195266290 + L1ME4a LINE L1 5492 5541 -772 809 252 22 14 chr1 47398123 47398345 -195266008 - MIR SINE MIR -3 259 36 1179 296 57 6 chr1 47398372 47398862 -195265491 + L1ME4a LINE L1 5603 6117 -4 228 324 0 0 chr1 47399662 47399730 -195264623 + GA-rich Low_complexity Low_complexity 6 73 0 637 285 24 14 chr1 47400093 47400315 -195264038 - MIR SINE MIR -36 226 3 2324 277 65 16 chr1 47400492 47401321 -195263032 + L2 LINE L2 2098 2967 -347 379 219 65 8 chr1 47402545 47402654 -195261699 - MIR SINE MIR -32 176 63 648 221 38 6 chr1 47403926 47404084 -195260269 + MIR SINE MIR 49 211 -51 311 298 51 51 chr1 47404635 47404793 -195259560 - MIR3 SINE MIR -49 159 2 23 0 0 0 chr1 47405026 47405049 -195259304 + AT_rich Low_complexity Low_complexity 1 23 0 220 269 0 0 chr1 47405828 47405880 -195258473 + L2 LINE L2 3232 3283 -30 228 67 0 0 chr1 47405898 47405928 -195258425 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 270 213 32 0 chr1 47406724 47406818 -195257535 + GA-rich Low_complexity Low_complexity 1 97 0 222 37 0 0 chr1 47407397 47407424 -195256929 + (CA)n Simple_repeat Simple_repeat 1 27 0 219 133 0 0 chr1 47407499 47407544 -195256809 + (CA)n Simple_repeat Simple_repeat 2 46 0 271 309 48 0 chr1 47407948 47408032 -195256321 - MIR SINE MIR -67 195 108 383 313 39 56 chr1 47408439 47408672 -195255681 + L2 LINE L2 2382 2610 -704 561 295 125 42 chr1 47408702 47409132 -195255221 + L2 LINE L2 2813 3272 0 408 326 81 0 chr1 47409133 47409305 -195255048 - MIR SINE MIR -37 225 40 264 308 39 0 chr1 47409349 47409453 -195254900 + MIR SINE MIR 96 203 -59 29 28 0 0 chr1 47410689 47410725 -195253628 + GC_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr1 47410853 47410887 -195253466 + GC_rich Low_complexity Low_complexity 1 34 0 32 81 0 0 chr1 47410919 47410993 -195253360 + GC_rich Low_complexity Low_complexity 1 74 0 27 29 0 0 chr1 47411123 47411157 -195253196 + GC_rich Low_complexity Low_complexity 1 34 0 424 313 120 59 chr1 47411319 47412148 -195252205 + L2 LINE L2 2334 3255 -17 434 265 103 15 chr1 47412272 47412408 -195251945 + MIR3 SINE MIR 33 180 -28 253 339 45 0 chr1 47412422 47412534 -195251819 - L2 LINE L2 -223 3049 2933 1845 166 31 35 chr1 47413831 47414295 -195250058 + L1MD2 LINE L1 5800 6227 -15 375 177 13 0 chr1 47414528 47414607 -195249746 + MIR SINE MIR 66 145 -63 213 174 22 0 chr1 47415523 47415569 -195248784 - L3 LINE CR1 -158 1419 1373 435 284 44 85 chr1 47416400 47416763 -195247590 + L1MEd LINE L1 666 1013 -5106 962 266 90 39 chr1 47416858 47417324 -195247029 + LTR16C LTR ERVL 2 491 0 1367 259 78 58 chr1 47417325 47417417 -195246936 - MLT1J LTR MaLR -43 468 379 2317 77 3 26 chr1 47417417 47417727 -195246626 + AluY SINE Alu 1 303 -8 1367 259 78 58 chr1 47417727 47417979 -195246374 - MLT1J LTR MaLR -132 379 110 2456 91 0 0 chr1 47417979 47418276 -195246077 - AluSq SINE Alu -16 297 1 1367 259 78 58 chr1 47418276 47418381 -195245972 - MLT1J LTR MaLR -401 110 9 307 288 85 20 chr1 47418434 47418672 -195245681 + L1MEd LINE L1 1127 1473 -1017 854 266 59 33 chr1 47418857 47419140 -195245213 - L2 LINE L2 -228 3085 2789 742 230 99 0 chr1 47419140 47419331 -195245022 - MER63A DNA MER1_type 0 210 1 854 266 59 33 chr1 47419331 47419538 -195244815 - L2 LINE L2 -524 2789 2589 264 282 205 6 chr1 47419670 47419826 -195244527 + MIR SINE MIR 20 206 -56 256 296 104 0 chr1 47420255 47420380 -195243973 - MIR SINE MIR -78 184 47 357 316 21 57 chr1 47420489 47420682 -195243671 + MIR3 SINE MIR 14 199 -9 506 207 148 39 chr1 47420708 47420911 -195243442 + MIR SINE MIR 13 237 -25 2111 130 3 0 chr1 47420949 47421268 -195243085 + AluSx SINE Alu 1 312 0 231 224 20 0 chr1 47421544 47421593 -195242760 + MIR3 SINE MIR 109 158 -50 216 0 0 0 chr1 47421866 47421890 -195242463 + (CAGCC)n Simple_repeat Simple_repeat 1 24 0 995 206 5 0 chr1 47421890 47422084 -195242269 + MER3 DNA MER1_type 15 209 0 273 366 0 10 chr1 47422121 47422222 -195242131 - MIR SINE MIR -73 135 36 208 312 220 0 chr1 47422692 47422801 -195241552 + MIR3 SINE MIR 38 170 -38 2402 88 0 0 chr1 47423071 47423368 -195240985 + AluSc SINE Alu 1 297 -12 487 215 94 47 chr1 47424339 47424531 -195239822 + MIR SINE MIR 7 205 -57 1349 235 24 24 chr1 47424576 47424771 -195239582 + MER90 LTR ERV1 3 200 -375 2259 110 0 10 chr1 47424771 47425100 -195239253 + AluSx SINE Alu 1 312 0 1349 235 24 24 chr1 47425100 47425283 -195239070 + MER90 LTR ERV1 199 381 -194 453 198 66 25 chr1 47425291 47425412 -195238941 + MER90 LTR ERV1 489 614 0 363 213 28 56 chr1 47425704 47425812 -195238541 - MIR SINE MIR -70 192 88 243 178 2 0 chr1 47426020 47426065 -195238288 - MIR SINE MIR -63 145 102 1031 204 14 19 chr1 47426092 47426303 -195238050 - MER63A DNA MER1_type 0 210 1 306 317 106 14 chr1 47426446 47426588 -195237765 + MER5A DNA MER1_type 35 189 0 335 273 0 27 chr1 47426922 47427032 -195237321 + MIR SINE MIR 34 140 -122 1970 174 153 20 chr1 47427286 47427329 -195237024 - MLT2B1 LTR ERVL 0 520 484 892 18 18 0 chr1 47427329 47427443 -195236910 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 1970 174 153 20 chr1 47427443 47427858 -195236495 - MLT2B1 LTR ERVL -36 484 1 1988 223 22 98 chr1 47428003 47428414 -195235939 - MLT1E LTR MaLR -16 577 227 2394 76 0 3 chr1 47428414 47428716 -195235637 - AluY SINE Alu -10 301 1 1988 223 22 98 chr1 47428716 47428928 -195235425 - MLT1E LTR MaLR -366 227 1 201 205 26 0 chr1 47429058 47429097 -195235256 - MIR SINE MIR -137 71 32 17733 160 23 25 chr1 47429488 47432792 -195231561 + L1PA14 LINE L1 1 3311 -4288 245 209 341 0 chr1 47432792 47432883 -195231470 + FLAM_C SINE Alu 9 130 -3 17733 160 23 25 chr1 47432883 47433202 -195231151 + L1PA14 LINE L1 3311 3629 -3970 2869 6 0 16 chr1 47433202 47433517 -195230836 - AluYa5 SINE Alu -1 310 1 17733 160 23 25 chr1 47433517 47435209 -195229144 + L1PA14 LINE L1 3629 5323 -2276 2569 70 0 6 chr1 47435209 47435522 -195228831 - AluY SINE Alu 0 311 1 17733 160 23 25 chr1 47435522 47437464 -195226889 + L1PA14 LINE L1 5323 7599 0 276 314 12 12 chr1 47437490 47437576 -195226777 + L2 LINE L2 2997 3082 -190 4893 117 14 27 chr1 47437942 47438205 -195226148 + Tigger2 DNA MER2_type 1 266 -2452 1805 150 0 20 chr1 47438205 47438505 -195225848 + AluJo SINE Alu 11 304 -8 4893 117 14 27 chr1 47438505 47439008 -195225345 + Tigger2 DNA MER2_type 266 757 -1961 1680 113 40 0 chr1 47439062 47439310 -195225043 + Tigger2 DNA MER2_type 2461 2718 0 653 233 123 7 chr1 47439387 47439592 -195224761 + MIR SINE MIR 30 255 -7 22 0 0 0 chr1 47440069 47440091 -195224262 + AT_rich Low_complexity Low_complexity 1 22 0 282 342 67 0 chr1 47440212 47440332 -195224021 - MIR3 SINE MIR 0 208 81 273 279 0 35 chr1 47440693 47440779 -195223574 - L3 LINE CR1 0 1577 1495 358 322 89 28 chr1 47440918 47441098 -195223255 - MIR SINE MIR -12 250 60 190 244 181 63 chr1 47441129 47441256 -195223097 + L2 LINE L2 2632 2773 -541 403 310 103 55 chr1 47441394 47441723 -195222630 + L2 LINE L2 2924 3268 -4 * 636 253 50 96 chr1 47441716 47441997 -195222356 - L3 LINE CR1 -276 1301 1034 196 245 160 0 chr1 47442030 47442136 -195222217 - MIR SINE MIR -14 248 126 214 309 0 15 chr1 47442199 47442267 -195222086 - L3 LINE CR1 -643 934 868 395 278 104 0 chr1 47442628 47442801 -195221552 - L2 LINE L2 -3 3310 3120 204 67 0 0 chr1 47443060 47443090 -195221263 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2443 81 0 0 chr1 47443625 47443920 -195220433 + AluY SINE Alu 1 295 -16 1475 216 133 62 chr1 47444176 47444756 -195219597 + MLT1E3 LTR MaLR 2 622 -2 949 188 0 0 chr1 47445334 47445499 -195218854 + FRAM SINE Alu 1 165 -1 24 0 0 0 chr1 47446042 47446066 -195218287 + GC_rich Low_complexity Low_complexity 1 24 0 236 185 25 84 chr1 47446127 47446246 -195218107 + C-rich Low_complexity Low_complexity 4 115 0 25 0 0 0 chr1 47446281 47446306 -195218047 + GC_rich Low_complexity Low_complexity 1 25 0 28 79 0 0 chr1 47446679 47446742 -195217611 + GC_rich Low_complexity Low_complexity 1 63 0 237 305 35 80 chr1 47447089 47447289 -195217064 - L3 LINE CR1 -4 1573 1383 222 273 273 14 chr1 47447318 47447457 -195216896 - L3 LINE CR1 -287 1290 1116 1592 177 37 24 chr1 47448434 47448728 -195215625 + AluJo SINE Alu 1 298 -14 184 273 68 0 chr1 47448752 47448796 -195215557 - L2 LINE L2 -17 3255 3209 424 352 13 47 chr1 47448904 47449205 -195215148 - L2 LINE L2 -167 3105 2815 23 0 0 0 chr1 47449243 47449266 -195215087 + AT_rich Low_complexity Low_complexity 1 23 0 237 271 34 34 chr1 47449360 47449478 -195214875 - L2 LINE L2 -800 2514 2397 376 314 89 40 chr1 47449543 47449938 -195214415 - L2 LINE L2 -2408 906 493 512 306 83 6 chr1 47450191 47450371 -195213982 + MIR SINE MIR 8 201 -61 186 316 63 0 chr1 47451276 47451355 -195212998 + MIR SINE MIR 171 254 -8 1707 119 73 26 chr1 47451453 47451755 -195212598 - MER2 DNA MER2_type 0 345 30 245 358 108 47 chr1 47451865 47452161 -195212192 + L2 LINE L2 212 525 -2789 781 298 52 2 chr1 47452204 47452532 -195211821 + L1ME3A LINE L1 5575 5914 -207 2028 100 15 0 chr1 47452768 47453037 -195211316 - AluSg SINE Alu 0 310 38 276 207 24 49 chr1 47453172 47453254 -195211099 - MER116 DNA Mariner 0 80 1 965 158 0 0 chr1 47453294 47453440 -195210913 + AluJb SINE Alu 5 150 -162 2477 66 0 25 chr1 47453596 47453914 -195210439 + AluY SINE Alu 2 311 0 946 153 100 163 chr1 47453916 47454217 -195210136 - AluJo SINE Alu -30 282 1 476 235 42 0 chr1 47454415 47454534 -195209819 - MIR SINE MIR -136 126 3 184 281 39 55 chr1 47454557 47454685 -195209668 - L2 LINE L2 -1270 2044 1919 218 250 47 0 chr1 47455180 47455244 -195209109 + MIR SINE MIR 34 100 -108 198 253 275 11 chr1 47455303 47455394 -195208959 - MIR SINE MIR -64 144 30 377 313 62 8 chr1 47455700 47455828 -195208525 - MIR SINE MIR -108 154 20 2332 150 49 20 chr1 47456233 47456328 -195208025 + L1MC3 LINE L1 7325 7416 -369 2102 106 7 10 chr1 47456328 47456629 -195207724 - AluSg SINE Alu -10 300 1 2332 150 49 20 chr1 47456629 47456981 -195207372 + L1MC3 LINE L1 7416 7785 0 318 300 27 40 chr1 47457459 47457609 -195206744 + MER5B DNA MER1_type 6 153 -25 * 685 307 175 26 chr1 47457600 47457685 -195206668 + L2 LINE L2 2376 2447 -866 1592 175 0 28 chr1 47457685 47457971 -195206382 - AluJo SINE Alu -7 305 28 685 307 175 26 chr1 47457971 47458619 -195205734 + L2 LINE L2 2447 3245 -68 3720 51 0 0 chr1 47458619 47459069 -195205284 - L1PA6 LINE L1 -2 6152 5703 685 307 175 26 chr1 47459069 47459150 -195205203 + L2 LINE L2 3245 3313 0 1808 119 0 23 chr1 47459155 47459415 -195204938 - AluSq SINE Alu -18 295 42 367 331 12 6 chr1 47459425 47459594 -195204759 + L2 LINE L2 2562 2731 -583 1441 160 148 8 chr1 47459605 47459868 -195204485 - AluJb SINE Alu -1 301 2 1985 123 46 59 chr1 47459933 47460105 -195204248 - L1MB3 LINE L1 -1 6182 6009 2030 97 153 38 chr1 47460105 47460358 -195203995 + MER83B LTR ERV1 1 304 -74 2102 115 10 29 chr1 47460358 47460670 -195203683 - AluSg SINE Alu -4 306 1 2030 97 153 38 chr1 47460670 47460755 -195203598 + MER83B LTR ERV1 304 378 0 1985 123 46 59 chr1 47460755 47460971 -195203382 - L1MB3 LINE L1 -174 6009 5799 500 256 110 28 chr1 47461030 47461319 -195203034 - L2 LINE L2 -236 3036 2713 365 293 158 43 chr1 47461405 47461709 -195202644 + L2 LINE L2 2921 3259 -54 26 0 0 0 chr1 47461742 47461768 -195202585 + AT_rich Low_complexity Low_complexity 1 26 0 624 204 193 8 chr1 47462074 47462338 -195202015 - MER5C DNA MER1_type -8 316 4 206 343 186 18 chr1 47462644 47462952 -195201401 + L2 LINE L2 2911 3268 -4 21 36 0 0 chr1 47463215 47463243 -195201110 + AT_rich Low_complexity Low_complexity 1 28 0 288 339 24 44 chr1 47463391 47463570 -195200783 + MIR SINE MIR 20 191 -69 431 243 72 33 chr1 47463640 47463792 -195200561 + MIR SINE MIR 68 225 -37 323 399 68 40 chr1 47464025 47464303 -195200050 - L2 LINE L2 -50 3222 2937 256 368 40 40 chr1 47464352 47464553 -195199800 - L2 LINE L2 -457 2857 2657 663 189 81 107 chr1 47464826 47465208 -195199145 - LTR37A LTR ERV1 -2 424 53 199 158 42 53 chr1 47466124 47466219 -195198134 + CT-rich Low_complexity Low_complexity 5 98 0 2200 114 0 19 chr1 47466447 47466762 -195197591 - AluSx SINE Alu -1 311 3 22 35 0 0 chr1 47466828 47466857 -195197496 + AT_rich Low_complexity Low_complexity 1 29 0 638 179 0 0 chr1 47466864 47466970 -195197383 - FLAM_C SINE Alu -8 135 30 1439 134 20 4 chr1 47466971 47467224 -195197129 - L1MB3 LINE L1 -40 6143 5887 218 301 58 29 chr1 47467323 47467426 -195196927 - MIR SINE MIR -69 193 88 230 219 0 47 chr1 47467830 47467894 -195196459 - L2 LINE L2 -84 3229 3169 2171 110 7 10 chr1 47468422 47468722 -195195631 - AluSx SINE Alu -13 299 1 1707 254 75 63 chr1 47468837 47469522 -195194831 - MER21B LTR ERV1 -147 716 24 378 287 0 0 chr1 47469603 47469704 -195194649 + MIR SINE MIR 162 262 0 1410 192 127 17 chr1 47469710 47470126 -195194227 - MLT1C LTR MaLR 0 467 6 4521 195 49 54 chr1 47470135 47471386 -195192967 - MLT1C-int LTR MaLR -8 1363 1 717 191 99 12 chr1 47471405 47471567 -195192786 + MLT1C LTR MaLR 286 461 -6 496 279 68 84 chr1 47472908 47473159 -195191194 - L2 LINE L2 -459 2855 2609 225 269 222 9 chr1 47473207 47473315 -195191038 + MIR SINE MIR 53 183 -79 214 262 0 0 chr1 47474246 47474288 -195190065 + (TG)n Simple_repeat Simple_repeat 2 43 0 984 224 92 36 chr1 47474495 47474853 -195189500 - MER39 LTR ERV1 0 707 330 264 255 0 49 chr1 47474880 47474982 -195189371 - MER34 LTR ERV1 -393 149 53 264 241 0 0 chr1 47475480 47475534 -195188819 - AluJ/monomer SINE Alu -6 296 243 27 0 0 0 chr1 47475537 47475564 -195188789 + AT_rich Low_complexity Low_complexity 1 27 0 19852 61 9 7 chr1 47476199 47477262 -195187091 - L1PA6 LINE L1 -6 6148 5089 2188 119 0 0 chr1 47477262 47477556 -195186797 + AluSg SINE Alu 1 294 -16 19852 61 9 7 chr1 47477556 47479914 -195184439 - L1PA6 LINE L1 -1065 5089 2716 5658 14 7 4 chr1 47479928 47480618 -195183735 - L1HS LINE L1 0 6155 5464 * 15898 113 38 32 chr1 47480591 47482850 -195181503 - L1PA6 LINE L1 -3418 2728 404 331 43 0 21 chr1 47482850 47482897 -195181456 - MER9 LTR ERVK -85 426 381 15898 113 38 32 chr1 47482897 47483293 -195181060 - L1PA6 LINE L1 -5742 404 12 1163 266 151 16 chr1 47483486 47484018 -195180335 - L2 LINE L2 -5 3308 2708 775 228 12 94 chr1 47484160 47484350 -195180003 + MIR SINE MIR 19 184 -78 3876 81 8 4 chr1 47484350 47484859 -195179494 - MER9 LTR ERVK 0 511 1 775 228 12 94 chr1 47484859 47484923 -195179430 + MIR SINE MIR 184 252 -10 180 0 0 0 chr1 47484993 47485013 -195179340 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 683 133 6 82 chr1 47485038 47485196 -195179157 + Charlie5 DNA MER1_type 2239 2384 -228 2160 87 35 0 chr1 47485728 47486014 -195178339 + AluSq SINE Alu 1 296 -17 25 0 0 0 chr1 47486247 47486272 -195178081 + AT_rich Low_complexity Low_complexity 1 25 0 190 250 75 25 chr1 47486623 47486703 -195177650 - MIR3 SINE MIR -27 181 98 23 0 0 0 chr1 47487348 47487371 -195176982 + AT_rich Low_complexity Low_complexity 1 23 0 338 0 24 0 chr1 47487522 47487564 -195176789 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2249 76 10 10 chr1 47487578 47487866 -195176487 - AluY SINE Alu -23 288 1 1407 150 32 12 chr1 47488183 47488436 -195175917 - L1PA16 LINE L1 -16 6150 5893 1125 211 69 16 chr1 47488605 47488908 -195175445 + L1ME3A LINE L1 5848 6166 -4 199 347 74 32 chr1 47489585 47489680 -195174673 - L2 LINE L2 -40 3232 3134 503 241 107 75 chr1 47489904 47490091 -195174262 - MIR SINE MIR -21 241 49 6657 182 43 19 chr1 47490362 47492757 -195171596 - L1MB4 LINE L1 0 6180 3725 523 183 126 109 chr1 47492766 47492903 -195171450 + MER58A DNA MER1_type 47 189 -2231 2081 127 37 0 chr1 47492903 47493203 -195171150 - AluSp SINE Alu -2 311 1 523 183 126 109 chr1 47493203 47493240 -195171113 + MER58A DNA MER1_type 189 224 0 187 341 207 7 chr1 47493925 47494060 -195170293 - MIR SINE MIR -100 162 1 236 324 25 131 chr1 47494457 47494778 -195169575 + L2 LINE L2 2985 3271 -1 1162 198 14 5 chr1 47494965 47495182 -195169171 + MER58A DNA MER1_type 6 224 0 980 214 70 9 chr1 47495488 47495537 -195168816 - MIR SINE MIR -6 256 211 270 0 0 0 chr1 47495537 47495567 -195168786 + (TG)n Simple_repeat Simple_repeat 2 31 0 980 214 70 9 chr1 47495567 47495732 -195168621 - MIR SINE MIR -51 211 29 226 241 0 17 chr1 47496046 47496104 -195168249 + L3 LINE CR1 1237 1293 -284 21 36 0 0 chr1 47496301 47496329 -195168024 + AT_rich Low_complexity Low_complexity 1 28 0 235 339 0 0 chr1 47496432 47496497 -195167856 + L3 LINE CR1 1513 1577 0 21 36 0 0 chr1 47496685 47496713 -195167640 + AT_rich Low_complexity Low_complexity 1 28 0 1891 170 0 7 chr1 47496888 47497177 -195167176 + AluJo SINE Alu 1 287 -25 213 225 0 0 chr1 47497356 47497396 -195166957 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1346 296 88 61 chr1 47497460 47498003 -195166350 - L3 LINE CR1 -13 1564 1007 2200 111 0 6 chr1 47498611 47498926 -195165427 + AluSq SINE Alu 1 313 0 191 288 34 17 chr1 47499202 47499261 -195165092 + MIR SINE MIR 203 262 0 847 155 39 11 chr1 47499484 47499665 -195164688 - MER3 DNA MER1_type 0 209 24 2012 73 14 42 chr1 47499669 47499955 -195164398 + AluSp SINE Alu 36 313 0 2750 166 4 17 chr1 47499955 47500472 -195163881 + THE1-int LTR MaLR 488 997 -583 213 175 0 0 chr1 47500528 47500568 -195163785 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 1341 152 37 41 chr1 47500894 47501137 -195163216 - AluJb SINE Alu 0 312 71 582 170 0 21 chr1 47501142 47501236 -195163117 - FLAM_C SINE Alu -32 111 20 320 266 47 55 chr1 47501286 47501414 -195162939 - MIR SINE MIR -49 213 87 2200 115 10 13 chr1 47501414 47501726 -195162627 - AluSx SINE Alu -1 311 1 1500 194 47 52 chr1 47501954 47502336 -195162017 - MLT1B LTR MaLR -10 380 1 318 332 67 43 chr1 47502637 47502777 -195161576 - MIR SINE MIR -55 153 9 2132 93 39 0 chr1 47502991 47503270 -195161083 + AluSp SINE Alu 10 299 -14 426 154 0 0 chr1 47503342 47503420 -195160933 - Charlie5 DNA MER1_type -33 2579 2502 1033 189 0 6 chr1 47503424 47503604 -195160749 + AluJo SINE Alu 5 183 -129 320 238 176 105 chr1 47504059 47504269 -195160084 - L3 LINE CR1 -11 1566 1342 514 202 84 17 chr1 47504332 47504451 -195159902 + L2 LINE L2 3187 3313 0 25 0 0 0 chr1 47504766 47504791 -195159562 + AT_rich Low_complexity Low_complexity 1 25 0 888 113 13 7 chr1 47504795 47504945 -195159408 - L1MB3 LINE L1 -17 6166 6016 186 341 65 43 chr1 47505338 47505476 -195158877 - L2 LINE L2 -191 3081 2941 284 347 151 29 chr1 47505549 47505788 -195158565 - L2 LINE L2 -568 2746 2479 1691 179 27 7 chr1 47506166 47506463 -195157890 - AluJo SINE Alu 0 312 10 40908 44 9 0 chr1 47506544 47512642 -195151711 - L1PA4 LINE L1 0 6155 1 284 130 19 0 chr1 47512675 47512772 -195151581 - Alu SINE Alu 0 351 254 31 82 0 0 chr1 47512930 47513003 -195151350 + AT_rich Low_complexity Low_complexity 1 73 0 465 336 137 19 chr1 47513075 47513337 -195151016 - L2 LINE L2 -337 2977 2685 2552 149 50 74 chr1 47513343 47513868 -195150485 - MLT2B1 LTR ERVL -8 512 1 4394 150 52 5 chr1 47513871 47514625 -195149728 - ERVL-B1 LTR ERVL -12 5752 4964 22 0 0 0 chr1 47514625 47514647 -195149706 + AT_rich Low_complexity Low_complexity 1 22 0 5824 135 30 29 chr1 47514677 47516703 -195147650 - L1MA5 LINE L1 -5 6295 4248 1942 130 27 3 chr1 47516705 47516997 -195147356 - AluJb SINE Alu -13 299 1 1433 206 49 0 chr1 47516999 47517325 -195147028 - L1MA5 LINE L1 -3143 3003 2662 2772 140 44 69 chr1 47517331 47517852 -195146501 - ERVL-B1 LTR ERVL -1077 4687 4180 425 303 51 20 chr1 47517862 47518057 -195146296 - L2 LINE L2 -888 2426 2226 289 246 44 113 chr1 47518158 47518361 -195145992 - L2 LINE L2 -1505 1809 1621 394 365 30 15 chr1 47518362 47518625 -195145728 + L1M3d LINE L1 9 275 -5616 * 8220 207 81 67 chr1 47518596 47521205 -195143148 + L1MA6 LINE L1 3 2577 -4156 * 10328 167 33 23 chr1 47521181 47524163 -195140190 + L1MA6 LINE L1 3880 6886 0 1270 280 30 106 chr1 47524167 47524896 -195139457 - L2 LINE L2 -1691 1623 950 293 261 25 51 chr1 47524926 47525083 -195139270 - L1ME4a LINE L1 -6 6115 5963 1625 158 61 27 chr1 47525100 47525430 -195138923 - MLT1B LTR MaLR 0 390 50 * 3673 220 107 56 chr1 47525416 47526992 -195137361 - MER52A LTR ERV1 -6 1749 1 391 177 25 13 chr1 47526992 47527071 -195137282 - MLT1B LTR MaLR -309 81 2 469 268 140 25 chr1 47527102 47527416 -195136937 - L1ME4a LINE L1 -199 5922 5573 227 341 34 23 chr1 47527711 47527799 -195136554 + MIR SINE MIR 33 121 -87 604 206 126 65 chr1 47528823 47529022 -195135331 + MIR SINE MIR 6 216 -46 589 249 79 34 chr1 47529274 47529451 -195134902 + MIR SINE MIR 20 204 -58 207 342 130 57 chr1 47529784 47530185 -195134168 - L3 LINE CR1 -12 1565 1136 * 377 303 83 8 chr1 47530072 47530204 -195134149 + L2 LINE L2 2553 2694 -620 447 262 106 114 chr1 47530360 47530719 -195133634 + L2 LINE L2 2914 3269 -3 364 342 97 25 chr1 47530727 47530923 -195133430 - L3 LINE CR1 -344 1233 1024 258 339 83 9 chr1 47530934 47531043 -195133310 - L2 LINE L2 -1 3312 3196 276 341 121 8 chr1 47531475 47531739 -195132614 + L1MC/D LINE L1 5260 5553 -2255 1186 201 14 0 chr1 47531739 47531953 -195132400 + AluJo SINE Alu 87 303 -9 642 193 18 0 chr1 47531955 47532069 -195132284 + FLAM_C SINE Alu 13 128 -15 1870 147 0 14 chr1 47532179 47532471 -195131882 + AluJb SINE Alu 12 299 -13 311 271 132 28 chr1 47532744 47532888 -195131465 + L3 LINE CR1 1321 1479 -98 271 264 9 100 chr1 47532884 47532899 -195131454 + L2 LINE L2 3006 3021 -292 * 2412 91 0 10 chr1 47532899 47533207 -195131146 - AluSx SINE Alu -7 305 1 271 264 9 100 chr1 47533207 47533301 -195131052 + L2 LINE L2 3021 3105 -208 243 0 0 0 chr1 47533372 47533399 -195130954 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr1 47533421 47533447 -195130906 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 541 203 143 15 chr1 47533469 47533602 -195130751 + L2 LINE L2 3164 3313 0 417 274 236 19 chr1 47533799 47534062 -195130291 + L2 LINE L2 2992 3311 -2 335 278 125 34 chr1 47534258 47534434 -195129919 + L2 LINE L2 3122 3313 0 336 303 78 0 chr1 47534440 47534570 -195129783 - MIR SINE MIR -62 146 32 386 275 31 15 chr1 47534595 47534725 -195129628 + MER5A DNA MER1_type 2 144 -45 896 246 18 14 chr1 47534765 47534985 -195129368 + MER58A DNA MER1_type 1 221 -3 965 180 77 0 chr1 47535509 47535703 -195128650 - MER3 DNA MER1_type 0 209 1 2522 68 0 3 chr1 47537944 47538252 -195126101 - AluY SINE Alu -4 307 1 6096 233 83 29 chr1 47538293 47538381 -195125972 + L1MEc LINE L1 36 118 -6278 2023 128 0 0 chr1 47538381 47538686 -195125667 - AluSx SINE Alu 0 305 1 6096 233 83 29 chr1 47538686 47539816 -195124537 + L1MEc LINE L1 118 1402 -4994 2071 113 0 3 chr1 47539816 47540126 -195124227 + AluY SINE Alu 1 309 0 6096 233 83 29 chr1 47540126 47540843 -195123510 + L1MEc LINE L1 1402 2079 -4317 1037 199 144 82 chr1 47540847 47541416 -195122937 + L1MEc LINE L1 2169 2768 -3447 4349 193 49 55 chr1 47541418 47542103 -195122250 + L1MB7 LINE L1 3919 4606 -1578 5979 136 107 15 chr1 47542103 47543229 -195121124 - Tigger3b DNA MER2_type -1 1230 2 4349 193 49 55 chr1 47543229 47544803 -195119550 + L1MB7 LINE L1 4606 6156 -28 1364 211 129 51 chr1 47544800 47545251 -195119102 + L1ME2 LINE L1 5599 6084 -80 * 2906 251 63 69 chr1 47546786 47547488 -195116865 - L1MC5 LINE L1 -50 7911 7206 772 236 111 0 chr1 47547488 47547687 -195116666 - MER58A DNA MER1_type -3 221 1 2906 251 63 69 chr1 47547687 47548316 -195116037 - L1MC5 LINE L1 -755 7206 6578 2209 105 0 3 chr1 47548316 47548611 -195115742 + AluSc SINE Alu 1 294 -15 2906 251 63 69 chr1 47548611 47549126 -195115227 - L1MC5 LINE L1 -1383 6578 6061 186 103 0 0 chr1 47549186 47549215 -195115138 + (TG)n Simple_repeat Simple_repeat 2 30 0 200 111 28 0 chr1 47550470 47550506 -195113847 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 337 232 72 48 chr1 47550619 47550744 -195113609 + HAL1b LINE L1 286 413 -935 1118 204 131 44 chr1 47550922 47551320 -195113033 - LTR41 LTR ERVL 0 795 347 222 194 0 0 chr1 47551442 47551478 -195112875 + (TG)n Simple_repeat Simple_repeat 2 37 0 429 254 47 36 chr1 47551522 47551798 -195112555 + L1MEc LINE L1 2946 3224 -2991 1728 189 3 13 chr1 47551826 47552133 -195112220 + AluJo SINE Alu 1 304 -8 2320 98 13 0 chr1 47552235 47552540 -195111813 + AluSc SINE Alu 1 309 0 1868 181 0 7 chr1 47552661 47552965 -195111388 + AluJb SINE Alu 1 302 -10 748 231 39 48 chr1 47553081 47553247 -195111106 + MER3 DNA MER1_type 1 166 -43 2586 88 11 19 chr1 47553247 47553621 -195110732 - THE1C LTR MaLR 0 375 5 748 231 39 48 chr1 47553621 47553662 -195110691 + MER3 DNA MER1_type 166 206 -3 405 299 106 55 chr1 47553665 47554099 -195110254 + L1MEc LINE L1 3664 4119 -2096 369 210 60 0 chr1 47554210 47554310 -195110043 + L1M4 LINE L1 5099 5204 -942 * 9379 71 13 2 chr1 47554306 47555580 -195108773 - L1P LINE L1 -1830 4316 3029 7427 74 10 0 chr1 47555580 47557346 -195107007 + L1PA6 LINE L1 4367 6147 -7 265 189 0 0 chr1 47557362 47557415 -195106938 + L1M4 LINE L1 5185 5237 -909 2816 183 80 3 chr1 47557428 47558050 -195106303 + L1MB7 LINE L1 4557 5226 -920 976 194 13 44 chr1 47558044 47558271 -195106082 + L1MB7 LINE L1 5936 6155 -29 * 1489 174 48 58 chr1 47558311 47558975 -195105378 + L1MB3 LINE L1 4915 5557 -623 699 115 0 0 chr1 47559000 47559096 -195105257 + FLAM_A SINE Alu 15 110 -32 2976 131 36 70 chr1 47559103 47559720 -195104633 + L1MB3 LINE L1 5587 6182 -1 2485 234 71 28 chr1 47559720 47560648 -195103705 + L1MC4a LINE L1 815 1782 -4614 283 321 21 26 chr1 47560668 47560861 -195103492 + L1MC4a LINE L1 4712 4903 -1312 1175 221 35 104 chr1 47560903 47561297 -195103056 - MLT1A2 LTR MaLR -5 369 3 2299 230 128 79 chr1 47561302 47563042 -195101311 + L1MC4a LINE L1 4944 5458 -757 1739 154 4 18 chr1 47563048 47563328 -195101025 + AluJb SINE Alu 19 294 -18 1813 227 80 62 chr1 47563336 47563390 -195100963 + L1MC4 LINE L1 7096 7148 -894 1827 162 0 3 chr1 47563390 47563680 -195100673 + AluJb SINE Alu 1 289 -23 1813 227 80 62 chr1 47563680 47564007 -195100346 + L1MC4 LINE L1 7148 7468 -574 1526 174 47 18 chr1 47564007 47564282 -195100071 + AluJo SINE Alu 1 283 -29 307 0 0 0 chr1 47564282 47564316 -195100037 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1813 227 80 62 chr1 47564316 47564837 -195099516 + L1MC4 LINE L1 7468 8041 -1 30 0 0 0 chr1 47564837 47564867 -195099486 + AT_rich Low_complexity Low_complexity 1 30 0 264 333 8 49 chr1 47564901 47565024 -195099329 + MER5A DNA MER1_type 72 189 0 697 244 73 6 chr1 47565275 47565439 -195098914 + MER5B DNA MER1_type 4 178 0 1703 182 0 7 chr1 47565683 47565969 -195098384 - AluJo SINE Alu -28 284 1 358 277 84 79 chr1 47566159 47566361 -195097992 + MIR SINE MIR 48 250 -12 1598 260 176 44 chr1 47566391 47567351 -195097002 - L2 LINE L2 -103 3210 2104 535 268 16 0 chr1 47567556 47567679 -195096674 + MIR SINE MIR 31 155 -107 * 919 245 56 13 chr1 47567671 47567904 -195096449 - MIR SINE MIR 0 262 20 526 266 41 32 chr1 47568038 47568230 -195096123 + MIR3 SINE MIR 6 207 -1 573 289 123 21 chr1 47568384 47568619 -195095734 + MIR SINE MIR 3 261 -1 229 274 134 78 chr1 47569017 47569196 -195095157 - MLT1K LTR MaLR -34 554 366 183 42 0 0 chr1 47569444 47569468 -195094885 + (T)n Simple_repeat Simple_repeat 1 24 0 721 241 97 32 chr1 47569773 47569989 -195094364 + MIR SINE MIR 18 247 -15 219 281 62 107 chr1 47570123 47570301 -195094052 + MIR3 SINE MIR 4 173 -35 360 329 37 12 chr1 47570623 47570787 -195093566 + MIR3 SINE MIR 40 207 -1 8151 38 33 1 chr1 47570837 47571129 -195093224 - LTR13 LTR ERVK 0 1007 726 212 0 36 0 chr1 47571129 47571157 -195093196 + (GA)n Simple_repeat Simple_repeat 2 30 0 8151 38 33 1 chr1 47571157 47571840 -195092513 - LTR13 LTR ERVK -281 726 1 544 274 39 7 chr1 47572375 47572528 -195091825 - MIR SINE MIR -55 207 50 265 162 88 0 chr1 47572994 47573062 -195091291 + L1ME3A LINE L1 2210 2283 -3863 25 31 0 0 chr1 47573091 47573123 -195091230 + AT_rich Low_complexity Low_complexity 1 32 0 1387 176 0 8 chr1 47573232 47573470 -195090883 + AluJo SINE Alu 66 301 -11 304 287 14 34 chr1 47573475 47573684 -195090669 + L1ME3A LINE L1 2385 2589 -3557 22 56 0 0 chr1 47573770 47573806 -195090547 + AT_rich Low_complexity Low_complexity 1 36 0 2047 132 0 10 chr1 47573927 47574223 -195090130 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr1 47574223 47574245 -195090108 + (GA)n Simple_repeat Simple_repeat 1 22 0 597 229 105 23 chr1 47574245 47574551 -195089802 + L1ME3A LINE L1 4487 4817 -1329 643 282 59 42 chr1 47574601 47575027 -195089326 + L1ME3A LINE L1 5514 5946 -224 27 73 0 0 chr1 47575197 47575252 -195089101 + AT_rich Low_complexity Low_complexity 1 55 0 624 302 73 25 chr1 47576028 47576273 -195088080 + MIR SINE MIR 2 258 -4 232 104 0 78 chr1 47576284 47576361 -195087992 + (TTATA)n Simple_repeat Simple_repeat 2 72 0 894 264 50 121 chr1 47576611 47576873 -195087480 - L2 LINE L2 0 3313 3034 600 242 6 0 chr1 47576873 47577030 -195087323 - L1MA10 LINE L1 0 6334 6177 894 264 50 121 chr1 47577030 47577266 -195087087 - L2 LINE L2 -279 3034 2864 2193 110 0 3 chr1 47577266 47577558 -195086795 + AluSx SINE Alu 1 291 -21 894 264 50 121 chr1 47577558 47577726 -195086627 - L2 LINE L2 -449 2864 2686 4110 164 57 3 chr1 47577727 47578611 -195085742 + L1MB7 LINE L1 5254 6184 0 187 226 38 0 chr1 47578662 47578715 -195085638 - L2 LINE L2 -705 2609 2555 238 261 54 45 chr1 47579629 47579740 -195084613 - MIR SINE MIR -55 207 96 300 271 205 33 chr1 47579939 47580090 -195084263 + MIR3 SINE MIR 19 195 -13 29 0 0 0 chr1 47580617 47580646 -195083707 + AT_rich Low_complexity Low_complexity 1 29 0 2461 75 0 0 chr1 47581089 47581384 -195082969 + AluSc SINE Alu 1 295 -14 2337 101 0 0 chr1 47581919 47582225 -195082128 + AluSg SINE Alu 1 306 -4 421 301 98 53 chr1 47582225 47582350 -195082003 - L2 LINE L2 -433 2881 2763 1916 134 153 5 chr1 47582350 47582723 -195081630 - MSTA LTR MaLR 0 428 1 2462 77 0 0 chr1 47582732 47583029 -195081324 + AluSx SINE Alu 1 297 -15 421 301 98 53 chr1 47583029 47583249 -195081104 - L2 LINE L2 -558 2756 2510 2147 118 3 30 chr1 47583643 47583947 -195080406 + AluSq SINE Alu 1 296 -17 904 97 19 13 chr1 47584277 47584432 -195079921 - L1MA4 LINE L1 -1 6299 6144 2097 129 0 32 chr1 47585465 47585774 -195078579 + AluSx SINE Alu 1 299 -13 444 276 94 8 chr1 47586984 47587111 -195077242 + MIR SINE MIR 2 139 -123 1095 208 92 17 chr1 47587111 47587405 -195076948 + Charlie1 DNA MER1_type 1698 2013 -748 555 320 221 11 chr1 47587503 47587869 -195076484 - L3 LINE CR1 -3 1574 1132 184 398 12 0 chr1 47587944 47588027 -195076326 - L3 LINE CR1 -475 1102 1019 2354 107 0 0 chr1 47588043 47588353 -195076000 + AluSg SINE Alu 1 310 0 281 128 0 0 chr1 47588583 47588630 -195075723 - FLAM SINE Alu 0 133 87 227 280 76 25 chr1 47589052 47589170 -195075183 - MIR SINE MIR -36 226 103 203 233 0 0 chr1 47590122 47590165 -195074188 + G-rich Low_complexity Low_complexity 1 43 0 626 178 138 29 chr1 47590355 47590529 -195073824 + MIR SINE MIR 67 259 -3 191 303 76 30 chr1 47590530 47590596 -195073757 - MIR3 SINE MIR -49 159 91 401 347 5 41 chr1 47591049 47591245 -195073108 - L2 LINE L2 -560 2754 2566 1234 133 0 0 chr1 47591270 47591436 -195072917 + FRAM SINE Alu 1 162 -14 595 250 61 6 chr1 47592383 47592547 -195071806 - MIR SINE MIR -8 254 82 371 343 21 7 chr1 47592560 47592703 -195071650 + MIR3 SINE MIR 55 199 -9 534 308 145 21 chr1 47592828 47593215 -195071138 - L1ME4a LINE L1 -115 6006 5572 571 262 119 56 chr1 47593698 47593984 -195070369 - L2 LINE L2 0 3313 3010 2118 131 3 0 chr1 47594002 47594299 -195070054 - AluSx SINE Alu -14 298 1 23 33 0 0 chr1 47594300 47594330 -195070023 + AT_rich Low_complexity Low_complexity 1 30 0 5956 162 50 67 chr1 47594415 47595373 -195068980 + Charlie1a DNA MER1_type 2 975 -1786 13582 45 9 1 chr1 47595373 47597838 -195066515 - L1PA5 LINE L1 0 6154 3673 2492 66 0 0 chr1 47597847 47598149 -195066204 - AluY SINE Alu -9 302 1 5956 162 50 67 chr1 47598149 47598235 -195066118 + Charlie1a DNA MER1_type 983 1069 -1692 713 121 7 21 chr1 47598235 47598375 -195065978 - L1MA4 LINE L1 -5 6295 6158 5956 162 50 67 chr1 47598375 47598797 -195065556 + Charlie1a DNA MER1_type 1069 1454 -1 2234 135 0 0 chr1 47598815 47599119 -195065234 + AluSx SINE Alu 1 304 -8 2067 281 89 14 chr1 47599123 47599788 -195064565 - L2 LINE L2 -428 2886 2172 675 145 262 0 chr1 47599787 47599932 -195064421 + MER5A DNA MER1_type 6 188 -1 * 301 205 18 107 chr1 47599932 47600013 -195064340 - L2 LINE L2 -1139 2175 2105 510 214 112 10 chr1 47600067 47600263 -195064090 - L1MC4a LINE L1 -1363 7240 7025 917 191 0 24 chr1 47600266 47600434 -195063919 + FRAM SINE Alu 1 159 -17 2398 252 98 70 chr1 47600434 47600941 -195063412 - L1MC4a LINE L1 -743 6198 5707 252 0 0 0 chr1 47600941 47600969 -195063384 + (CA)n Simple_repeat Simple_repeat 2 29 0 2398 252 98 70 chr1 47600969 47602002 -195062351 - L1MC4a LINE L1 -1234 5707 4704 878 229 96 39 chr1 47602002 47602282 -195062071 - AluJo SINE Alu -4 298 3 2398 252 98 70 chr1 47602282 47602696 -195061657 - L1MC4a LINE L1 -2237 4704 4983 1442 154 62 10 chr1 47602696 47602768 -195061585 - MER33 DNA MER1_type -2263 322 255 2357 100 0 0 chr1 47602768 47603068 -195061285 + AluSg SINE Alu 1 300 -10 1442 154 62 10 chr1 47603068 47603300 -195061053 - MER33 DNA MER1_type -2330 255 2 2398 252 98 70 chr1 47603300 47603714 -195060639 - L1MC4a LINE L1 -1957 4984 4583 214 191 0 0 chr1 47603725 47603767 -195060586 + T-rich Low_complexity Low_complexity 1 42 0 14494 34 0 0 chr1 47603768 47606277 -195058076 - L1PA3 LINE L1 -1 6154 3645 3017 42 0 0 chr1 47606288 47606672 -195057681 - L1PA3 LINE L1 -4106 2040 1657 * 4173 223 61 64 chr1 47606667 47607076 -195057277 - L1M4 LINE L1 -944 5202 4793 1714 186 3 10 chr1 47607076 47607367 -195056986 - AluJo SINE Alu -19 293 5 4173 223 61 64 chr1 47607367 47608737 -195055616 - L1M4 LINE L1 -1353 4793 3429 258 278 97 0 chr1 47608897 47609073 -195055280 + L1MDb LINE L1 1166 1358 -5051 933 135 153 0 chr1 47609086 47609249 -195055104 - AluJo SINE Alu -46 266 79 1422 272 70 68 chr1 47609418 47611184 -195053169 - L1MCc LINE L1 -3962 3160 1182 1239 255 130 28 chr1 47611829 47612500 -195051853 + L2 LINE L2 2559 3306 -7 315 366 71 16 chr1 47612979 47613162 -195051191 + MIR3 SINE MIR 11 203 -5 2428 51 0 7 chr1 47613743 47614035 -195050318 + AluY SINE Alu 1 290 -21 517 299 79 27 chr1 47614423 47614660 -195049693 - MIR SINE MIR -17 245 1 23 0 0 0 chr1 47614811 47614834 -195049519 + AT_rich Low_complexity Low_complexity 1 23 0 182 125 0 25 chr1 47615039 47615079 -195049274 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 432 150 0 0 chr1 47615208 47615288 -195049065 + (TGGA)n Simple_repeat Simple_repeat 3 82 0 784 294 135 25 chr1 47615452 47615816 -195048537 + L3 LINE CR1 1169 1572 -5 1791 161 3 13 chr1 47616016 47616327 -195048026 - AluJo SINE Alu -4 308 1 351 305 32 45 chr1 47616345 47616499 -195047854 + MIR SINE MIR 2 153 -109 1671 175 7 10 chr1 47616943 47617235 -195047118 + AluJb SINE Alu 1 291 -21 24 0 0 0 chr1 47618418 47618442 -195045911 + AT_rich Low_complexity Low_complexity 1 24 0 379 242 117 0 chr1 47619172 47619289 -195045064 + MIR3 SINE MIR 63 189 -19 1650 239 78 24 chr1 47619381 47619971 -195044382 - HAL1 LINE L1 0 2507 1886 328 249 214 29 chr1 47620077 47620201 -195044152 - HAL1 LINE L1 -1030 1477 1377 1894 159 0 0 chr1 47620201 47620497 -195043856 + AluSx SINE Alu 1 296 -16 328 249 214 29 chr1 47620497 47620717 -195043636 - HAL1 LINE L1 -1130 1377 1069 4639 135 12 15 chr1 47620918 47621426 -195042927 - L1MC1 LINE L1 0 6333 5828 2282 88 0 22 chr1 47621426 47621744 -195042609 - AluY SINE Alu 0 311 1 4639 135 12 15 chr1 47621744 47622012 -195042341 - L1MC1 LINE L1 -505 5828 5560 1641 153 0 50 chr1 47622017 47622337 -195042016 + AluJb SINE Alu 1 304 -8 2090 228 34 17 chr1 47622337 47622806 -195041547 + L1M2 LINE L1 15 491 -6358 5946 269 75 40 chr1 47622972 47623449 -195040904 - L1 LINE L1 -1033 5113 4654 1549 144 55 4 chr1 47623449 47623706 -195040647 - AluJo SINE Alu -42 270 1 5946 269 75 40 chr1 47623706 47623977 -195040376 - L1 LINE L1 -1492 4654 4394 1571 162 30 27 chr1 47623977 47624273 -195040080 - AluJo SINE Alu -15 297 1 5946 269 75 40 chr1 47624273 47625305 -195039048 - L1 LINE L1 -1752 4394 3400 269 26 0 26 chr1 47625305 47625344 -195039009 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5946 269 75 40 chr1 47625344 47625408 -195038945 - L1 LINE L1 -2746 3400 3340 2114 114 0 3 chr1 47625408 47625715 -195038638 - AluSg SINE Alu -4 306 1 5946 269 75 40 chr1 47625715 47625971 -195038382 - L1 LINE L1 -2806 3340 3095 2094 114 0 23 chr1 47625971 47626138 -195038215 - AluSx SINE Alu -13 299 141 2278 94 3 0 chr1 47626138 47626447 -195037906 - AluSg SINE Alu 0 310 1 2094 114 0 23 chr1 47626447 47626585 -195037768 - AluSx SINE Alu -171 141 1 5946 269 75 40 chr1 47626585 47626741 -195037612 - L1 LINE L1 -3051 3095 2946 1849 158 0 16 chr1 47626741 47627058 -195037295 + AluJb SINE Alu 1 312 0 5946 269 75 40 chr1 47627058 47627609 -195036744 - L1 LINE L1 -3200 2946 2201 2182 73 4 0 chr1 47627623 47627896 -195036457 - LTR8A LTR ERV1 -453 274 1 3203 137 174 14 chr1 47627896 47627920 -195036433 - L1MCa LINE L1 -4470 1956 1937 1439 150 9 138 chr1 47627920 47628267 -195036086 + AluJb SINE Alu 1 302 0 3203 137 174 14 chr1 47628267 47628937 -195035416 - L1MCa LINE L1 -4489 1937 1151 3428 153 66 41 chr1 47628954 47628998 -195035355 + LTR34 LTR ERV1 1 42 -657 4437 132 127 15 chr1 47628998 47629741 -195034612 - LTR1B LTR ERV1 0 826 1 3428 153 66 41 chr1 47629741 47630227 -195034126 + LTR34 LTR ERV1 42 554 -145 2243 97 7 0 chr1 47630227 47630535 -195033818 + AluY SINE Alu 1 310 -1 3428 153 66 41 chr1 47630535 47630685 -195033668 + LTR34 LTR ERV1 554 699 0 5418 146 77 65 chr1 47630687 47630758 -195033595 - L1MCa LINE L1 -5287 1139 1070 1586 168 36 10 chr1 47630758 47631062 -195033291 - AluJb SINE Alu 0 312 1 5418 146 77 65 chr1 47631062 47631357 -195032996 - L1MCa LINE L1 -5356 1070 780 1731 92 92 43 chr1 47631357 47631664 -195032689 + AluSx SINE Alu 1 312 0 5418 146 77 65 chr1 47631664 47632389 -195031964 - L1MCa LINE L1 -5646 780 34 912 204 52 21 chr1 47632661 47632912 -195031441 - MLT1H1 LTR MaLR -293 302 4 505 257 28 134 chr1 47632936 47633275 -195031078 - MLT1H1-int LTR MaLR -24 1347 1046 2130 69 61 0 chr1 47633275 47633552 -195030801 + AluY SINE Alu 1 294 -17 505 257 28 134 chr1 47633552 47633570 -195030783 - MLT1H1-int LTR MaLR -325 1046 1028 1588 162 3 14 chr1 47633824 47634108 -195030245 + AluJo SINE Alu 1 281 -31 437 276 80 53 chr1 47634526 47634763 -195029590 - MLT1H1-int LTR MaLR -848 523 276 2408 39 0 0 chr1 47634763 47635074 -195029279 + AluY SINE Alu 1 311 0 437 276 80 53 chr1 47635074 47635099 -195029254 - MLT1H1-int LTR MaLR -1095 276 253 248 291 12 12 chr1 47635146 47635232 -195029121 - MLT1H1-int LTR MaLR -1285 86 1 493 237 246 25 chr1 47635232 47635567 -195028786 - MLT1G1 LTR MaLR 0 595 156 257 213 0 33 chr1 47635664 47635725 -195028628 - L1ME3 LINE L1 -2 6160 6102 468 97 0 0 chr1 47635725 47635787 -195028566 + Alu SINE Alu 2 63 -250 1534 89 0 0 chr1 47635787 47635989 -195028364 + AluSg/x SINE Alu 97 298 -12 1269 213 82 3 chr1 47635992 47636297 -195028056 - L1ME2 LINE L1 -54 6110 5782 6884 125 66 14 chr1 47636297 47636384 -195027969 - Tigger3b DNA MER2_type -1797 1231 1150 2143 147 3 26 chr1 47636384 47636725 -195027628 - MER1B DNA MER1_type -4 333 1 6884 125 66 14 chr1 47636725 47637807 -195026546 - Tigger3b DNA MER2_type -1878 1150 1 597 194 23 0 chr1 47637807 47637936 -195026417 - L1ME2 LINE L1 -379 5783 5652 632 261 69 23 chr1 47638005 47638265 -195026088 - HAL1 LINE L1 -2137 370 99 322 289 33 0 chr1 47638407 47638497 -195025856 - MIR3 SINE MIR -6 202 110 1713 154 43 0 chr1 47638841 47639121 -195025232 - AluJo SINE Alu -16 296 5 2101 88 10 0 chr1 47639123 47639417 -195024936 - AluSg SINE Alu -13 297 1 30 45 0 0 chr1 47639421 47639465 -195024888 + AT_rich Low_complexity Low_complexity 1 44 0 219 69 0 0 chr1 47639567 47639596 -195024757 + (CA)n Simple_repeat Simple_repeat 2 30 0 268 250 24 48 chr1 47640953 47641037 -195023316 - L2 LINE L2 -9 3263 3182 2300 81 0 16 chr1 47641205 47641514 -195022839 + AluSx SINE Alu 1 304 -8 303 71 0 0 chr1 47644434 47644476 -195019877 + (CCTG)n Simple_repeat Simple_repeat 2 43 0 797 187 41 181 chr1 47644855 47645174 -195019179 - L1MC4 LINE L1 -1 8041 7679 2267 69 0 36 chr1 47645174 47645480 -195018873 + AluY SINE Alu 1 295 -16 797 187 41 181 chr1 47645480 47645513 -195018840 - L1MC4 LINE L1 -363 7679 7643 2045 133 0 0 chr1 47645513 47645813 -195018540 + AluSx SINE Alu 1 300 -12 797 187 41 181 chr1 47645813 47646046 -195018307 - L1MC4 LINE L1 -399 7643 7537 368 317 78 45 chr1 47646054 47646297 -195018056 - L2 LINE L2 -10 3262 3012 2235 90 10 0 chr1 47646361 47646651 -195017702 + AluSx SINE Alu 1 293 -19 381 380 95 3 chr1 47647345 47647629 -195016724 + L2 LINE L2 3002 3311 -2 638 278 152 94 chr1 47647820 47648012 -195016341 - L3 LINE CR1 -1 1576 1397 2392 83 3 0 chr1 47648012 47648324 -195016029 - AluSp SINE Alu 0 313 1 638 278 152 94 chr1 47648324 47648598 -195015755 - L3 LINE CR1 -180 1397 1083 315 294 42 42 chr1 47648604 47648723 -195015630 + L2 LINE L2 3183 3301 -12 21 0 0 0 chr1 47648934 47648955 -195015398 + AT_rich Low_complexity Low_complexity 1 21 0 1568 157 44 37 chr1 47649133 47649427 -195014926 + AluSx SINE Alu 1 296 -16 456 237 72 22 chr1 47649919 47650058 -195014295 - MIR SINE MIR -70 192 47 361 356 44 11 chr1 47651096 47651276 -195013077 - MIR3 SINE MIR -7 201 16 226 200 0 0 chr1 47651566 47651606 -195012747 + CT-rich Low_complexity Low_complexity 4 43 0 252 348 76 43 chr1 47651971 47652155 -195012198 - L2 LINE L2 -191 3081 2892 853 317 211 50 chr1 47652255 47654280 -195010073 - L2 LINE L2 -576 2738 376 2339 97 0 0 chr1 47654280 47654591 -195009762 + AluY SINE Alu 1 311 0 853 317 211 50 chr1 47654591 47654618 -195009735 - L2 LINE L2 -2938 376 355 244 250 64 106 chr1 47654718 47654880 -195009473 + MIR SINE MIR 45 191 -65 308 310 60 0 chr1 47655394 47655494 -195008859 + MIR SINE MIR 93 198 -64 711 252 45 131 chr1 47655534 47655608 -195008745 + L2 LINE L2 2557 2636 -678 1620 166 35 14 chr1 47655608 47655897 -195008456 - AluJb SINE Alu -17 295 1 711 252 45 131 chr1 47655897 47655911 -195008442 + L2 LINE L2 2636 2650 -664 2301 77 0 3 chr1 47655911 47656209 -195008144 - AluSg SINE Alu -13 297 1 711 252 45 131 chr1 47656209 47656540 -195007813 + L2 LINE L2 2650 2941 -373 325 160 53 27 chr1 47656603 47656678 -195007675 - L2 LINE L2 -96 3217 3141 1778 165 71 34 chr1 47656687 47657038 -195007315 - MLT1A1 LTR MaLR -1 364 1 254 156 16 47 chr1 47657038 47657102 -195007251 + (TATG)n Simple_repeat Simple_repeat 1 62 0 1805 154 3 10 chr1 47657594 47657899 -195006454 - AluJo SINE Alu -7 305 3 261 262 112 19 chr1 47657942 47658049 -195006304 - L2 LINE L2 -44 3269 3153 756 300 78 67 chr1 47658058 47658661 -195005692 - L2 LINE L2 -2 3311 2710 777 104 17 0 chr1 47658666 47658781 -195005572 - FRAM SINE Alu -2 174 58 426 236 113 28 chr1 47659275 47659467 -195004886 - MLT1K LTR MaLR -7 589 397 493 233 103 27 chr1 47659541 47659687 -195004666 - MLT1K LTR MaLR -430 158 2 2465 59 0 0 chr1 47659765 47660068 -195004285 - AluY SINE Alu -8 303 1 372 241 271 8 chr1 47660805 47660938 -195003415 + MIR SINE MIR 74 241 -21 268 132 0 0 chr1 47661134 47661172 -195003181 - Alu SINE Alu -263 38 1 341 271 141 24 chr1 47661477 47661647 -195002706 + MIR3 SINE MIR 16 205 -3 272 243 153 41 chr1 47661780 47661954 -195002399 - MIR3 SINE MIR -56 152 8 845 203 0 0 chr1 47662023 47662181 -195002172 + FRAM SINE Alu 1 158 -18 2186 90 13 10 chr1 47662222 47662533 -195001820 + AluSx SINE Alu 1 312 0 236 91 23 0 chr1 47662903 47662947 -195001406 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 183 277 12 0 chr1 47664467 47664531 -194999822 + MIR SINE MIR 25 92 -116 232 318 119 8 chr1 47665519 47665645 -194998708 + MIR SINE MIR 103 242 -20 2101 109 0 22 chr1 47666733 47667044 -194997309 - AluSx SINE Alu -8 304 1 1898 145 0 23 chr1 47667046 47667350 -194997003 - AluJb SINE Alu -15 297 1 368 302 103 0 chr1 47667355 47667471 -194996882 - MIR SINE MIR -120 142 15 468 289 94 20 chr1 47668078 47668279 -194996074 + MIR SINE MIR 47 262 0 670 272 43 0 chr1 47668729 47668913 -194995440 + LTR16A LTR ERVL 202 393 -57 1041 136 19 0 chr1 47668913 47669089 -194995264 - AluSp SINE Alu 0 313 142 239 254 17 0 chr1 47669089 47669148 -194995205 + LTR16A LTR ERVL 391 450 0 968 215 56 51 chr1 47669713 47670087 -194994266 - LTR27 LTR ERV1 0 636 121 814 190 11 17 chr1 47670115 47670294 -194994059 - LTR28 LTR ERV1 -842 178 1 1625 257 76 65 chr1 47670297 47670942 -194993411 + HERV16 LTR ERVL 572 1223 -3773 2335 40 40 17 chr1 47671140 47671439 -194992914 - AluY SINE Alu -5 306 1 233 337 58 52 chr1 47671719 47672020 -194992333 + L2 LINE L2 2748 3050 -222 226 326 54 11 chr1 47676347 47676439 -194987914 - L2 LINE L2 -3203 111 16 1320 191 0 21 chr1 47678022 47678263 -194986090 - AluJo SINE Alu -75 237 2 259 347 99 24 chr1 47678643 47678856 -194985497 + L2 LINE L2 2733 2961 -353 22 0 0 0 chr1 47678859 47678881 -194985472 + AT_rich Low_complexity Low_complexity 1 22 0 2338 92 0 0 chr1 47678884 47679189 -194985164 - AluSg SINE Alu -5 305 1 449 145 0 0 chr1 47679194 47679263 -194985090 - FLAM_A SINE Alu -12 130 62 183 271 0 51 chr1 47679314 47679373 -194984980 + L2 LINE L2 3009 3064 -249 224 283 33 0 chr1 47679514 47679574 -194984779 + L2 LINE L2 3206 3267 -5 222 227 0 30 chr1 47679991 47680057 -194984296 + (CCCCG)n Simple_repeat Simple_repeat 5 68 0 29 78 0 0 chr1 47680381 47680445 -194983908 + GC_rich Low_complexity Low_complexity 1 64 0 199 304 51 58 chr1 47680881 47681019 -194983334 - MIR SINE MIR -77 185 49 189 0 0 0 chr1 47682636 47682657 -194981696 + (T)n Simple_repeat Simple_repeat 1 21 0 473 335 91 8 chr1 47682670 47682779 -194981574 + L1MC/D LINE L1 5319 5418 -2390 2322 90 0 3 chr1 47682779 47683091 -194981262 + AluSx SINE Alu 1 311 -1 473 335 91 8 chr1 47683091 47683223 -194981130 + L1MC/D LINE L1 5418 5580 -2228 414 278 72 60 chr1 47683270 47683556 -194980797 - MLT1J LTR MaLR -62 553 228 250 221 44 15 chr1 47683992 47684060 -194980293 + LTR16A1 LTR ERVL 209 278 -179 204 200 0 0 chr1 47684062 47684097 -194980256 + (CACCC)n Simple_repeat Simple_repeat 4 38 0 541 201 40 121 chr1 47684097 47684296 -194980057 + LTR16A1 LTR ERVL 275 457 0 474 304 88 0 chr1 47684296 47684444 -194979909 + L2 LINE L2 2883 3043 -270 1113 143 6 0 chr1 47684446 47684628 -194979725 - AluSg/x SINE Alu -7 305 123 341 156 13 52 chr1 47734628 47734705 -194929648 - AluJ SINE Alu -109 193 120 32 0 0 0 chr1 47734753 47734785 -194929568 + AT_rich Low_complexity Low_complexity 1 32 0 715 157 0 9 chr1 47734791 47734899 -194929454 - AluJ SINE Alu -201 111 5 851 201 111 24 chr1 47734903 47735191 -194929162 - MER69 DNA AcHobo -713 1813 1501 296 262 158 49 chr1 47735192 47735356 -194928997 + L2 LINE L2 3021 3202 -111 642 154 0 10 chr1 47735630 47735771 -194928582 + FLAM_C SINE Alu 25 143 0 818 312 82 7 chr1 47735997 47736583 -194927770 + L2 LINE L2 2417 3053 -219 1671 183 0 7 chr1 47736684 47736993 -194927360 + AluJo SINE Alu 1 307 0 180 344 82 0 chr1 47737001 47737062 -194927291 + L2 LINE L2 3117 3182 -90 952 272 16 29 chr1 47737069 47737315 -194927038 - MIR SINE MIR 0 262 20 327 284 74 0 chr1 47737339 47737420 -194926933 + L2 LINE L2 3224 3310 -3 210 238 0 0 chr1 47737424 47737466 -194926887 - L2 LINE L2 -12 3260 3219 466 244 17 17 chr1 47737960 47738079 -194926274 + MER103 DNA DNA 3 121 -45 3079 107 14 0 chr1 47738349 47738771 -194925582 + MSTA LTR MaLR 1 428 0 394 215 68 110 chr1 47738777 47738894 -194925459 - MIR SINE MIR -15 247 137 2151 118 14 0 chr1 47738894 47739190 -194925163 + AluSx SINE Alu 1 300 -12 394 215 68 110 chr1 47739190 47739235 -194925118 - MIR SINE MIR -125 137 92 181 262 0 0 chr1 47739952 47739994 -194924359 - MIR SINE MIR -90 172 131 673 194 8 16 chr1 47739997 47740126 -194924227 - FLAM_A SINE Alu -5 128 1 590 276 29 6 chr1 47740327 47740497 -194923856 + MIR SINE MIR 47 220 -42 2102 142 0 3 chr1 47740777 47741086 -194923267 - AluJo SINE Alu -4 308 1 395 191 0 0 chr1 47741086 47741154 -194923199 - MIR SINE MIR -194 68 1 759 277 212 14 chr1 47741286 47741776 -194922577 - L2 LINE L2 -3 3310 2712 2115 151 58 43 chr1 47741776 47742133 -194922220 - L1MC2 LINE L1 0 6344 5977 2323 114 3 0 chr1 47742133 47742439 -194921914 - AluSx SINE Alu -5 307 1 2115 151 58 43 chr1 47742439 47742546 -194921807 - L1MC2 LINE L1 -367 5977 5873 1883 166 10 10 chr1 47742552 47742854 -194921499 - AluJo SINE Alu -10 302 1 441 295 119 25 chr1 47742854 47743098 -194921255 - L2 LINE L2 -595 2719 2453 216 0 0 0 chr1 47743621 47743645 -194920708 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 896 237 53 0 chr1 47744470 47744677 -194919676 + MER20 DNA MER1_type 2 219 0 324 289 25 31 chr1 47744694 47744853 -194919500 - L1ME3A LINE L1 -50 6120 5963 353 116 0 29 chr1 47746344 47746413 -194917940 - AluS SINE Alu -235 67 1 1906 168 0 7 chr1 47746416 47746714 -194917639 - AluJo SINE Alu -16 296 1 3428 101 112 0 chr1 47746716 47747280 -194917073 - Tigger3b DNA MER2_type -604 627 1 322 308 75 0 chr1 47747336 47747456 -194916897 - L2 LINE L2 -303 3010 2882 268 211 18 0 chr1 47747488 47747545 -194916808 + L2 LINE L2 2686 2743 -571 640 231 24 53 chr1 47747667 47747836 -194916517 - MER5A DNA MER1_type -25 164 1 2323 118 0 0 chr1 47747863 47748167 -194916186 - AluSx SINE Alu -8 304 1 2402 101 3 0 chr1 47748268 47748575 -194915778 - AluSx SINE Alu -4 308 1 1649 175 87 0 chr1 47748695 47748981 -194915372 - AluJb SINE Alu -1 311 1 1475 187 16 0 chr1 47748991 47749242 -194915111 - AluJo SINE Alu -23 289 35 219 290 0 103 chr1 47749465 47749572 -194914781 - MIR SINE MIR -102 160 65 197 261 22 0 chr1 47749572 47749618 -194914735 - MIR SINE MIR -118 90 44 606 172 0 0 chr1 47749620 47749713 -194914640 + AluJ/FLAM SINE Alu 2 94 -218 246 253 53 51 chr1 47750013 47750096 -194914257 + MIR SINE MIR 72 153 -62 2627 33 0 7 chr1 47750207 47750510 -194913843 + AluY SINE Alu 1 301 -10 479 262 52 17 chr1 47750538 47750682 -194913671 - MIR SINE MIR -11 251 103 333 298 0 0 chr1 47750692 47750776 -194913577 - L2 LINE L2 0 3272 3189 25 51 0 0 chr1 47751755 47751794 -194912559 + GC_rich Low_complexity Low_complexity 1 39 0 36 87 0 0 chr1 47751909 47752001 -194912352 + GC_rich Low_complexity Low_complexity 1 92 0 23 0 0 0 chr1 47752177 47752200 -194912153 + GC_rich Low_complexity Low_complexity 1 23 0 2176 70 12 0 chr1 47753324 47753583 -194910770 + AluSc SINE Alu 32 293 -16 180 280 120 0 chr1 47753849 47753899 -194910454 - MIR SINE MIR -80 182 127 219 143 24 0 chr1 47754519 47754561 -194909792 + MIR SINE MIR 109 151 -111 256 151 0 19 chr1 47755288 47755341 -194909012 - HAL1b LINE L1 -684 664 613 484 270 27 0 chr1 47755397 47755508 -194908845 + MIR SINE MIR 128 241 -21 1364 258 64 13 chr1 47755610 47756001 -194908352 - LTR16A LTR ERVL 0 450 40 2193 127 3 0 chr1 47756009 47756316 -194908037 - AluSx SINE Alu -2 310 3 262 286 14 0 chr1 47756399 47756469 -194907884 - MER96 DNA MER1_type? -104 71 1 447 174 0 0 chr1 47756596 47756682 -194907671 + (CAT)n Simple_repeat Simple_repeat 1 86 0 265 253 127 57 chr1 47756973 47757131 -194907222 - MIR SINE MIR -74 188 20 235 305 39 47 chr1 47757194 47757322 -194907031 + MIR SINE MIR 66 192 -70 191 207 108 72 chr1 47757848 47757959 -194906394 + L2 LINE L2 2857 2971 -301 552 120 0 0 chr1 47758087 47758162 -194906191 + AluJ/FLAM SINE Alu 2 76 -236 23 68 0 0 chr1 47758162 47758206 -194906147 + AT_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr1 47758237 47758271 -194906082 + AT_rich Low_complexity Low_complexity 1 34 0 2207 108 4 0 chr1 47758273 47758594 -194905759 + AluSq SINE Alu 3 324 0 4833 142 66 34 chr1 47758884 47759814 -194904539 - Tigger1 DNA MER2_type -1120 1298 340 1093 156 24 24 chr1 47759813 47760025 -194904328 - Tigger1 DNA MER2_type -2205 213 2 * 1613 185 3 14 chr1 47760072 47760359 -194903994 + AluJb SINE Alu 2 285 -27 29 28 0 0 chr1 47760360 47760396 -194903957 + AT_rich Low_complexity Low_complexity 1 36 0 447 325 98 19 chr1 47760397 47760707 -194903646 - L2 LINE L2 -214 3099 2767 1463 106 144 8 chr1 47760835 47761099 -194903254 - MSTA LTR MaLR 0 428 129 5297 140 24 6 chr1 47761224 47762285 -194902068 + L1PA16 LINE L1 5080 6157 -9 362 283 33 0 chr1 47762308 47762428 -194901925 + MLT1I LTR MaLR 269 392 -17 654 178 8 8 chr1 47762797 47762915 -194901438 + FLAM_C SINE Alu 1 118 -15 249 298 50 25 chr1 47763017 47763138 -194901215 - MIR SINE MIR -59 203 80 363 394 72 10 chr1 47763773 47764164 -194900189 + L2 LINE L2 2226 2640 -674 254 212 20 0 chr1 47764783 47764839 -194899514 - AluJ/monomer SINE Alu -249 50 1 769 269 93 25 chr1 47764933 47765330 -194899023 + MLT1J LTR MaLR 33 456 -55 465 330 104 24 chr1 47765510 47765639 -194898714 - L1ME4a LINE L1 -187 5934 5817 2447 96 0 0 chr1 47765639 47765941 -194898412 - AluSx SINE Alu -1 311 10 465 330 104 24 chr1 47765941 47766099 -194898254 - L1ME4a LINE L1 -304 5817 5624 186 43 0 0 chr1 47766303 47766326 -194898027 + (TC)n Simple_repeat Simple_repeat 1 23 0 749 291 39 0 chr1 47766352 47766534 -194897819 + MIR SINE MIR 12 200 -62 557 277 100 32 chr1 47766533 47766753 -194897600 - MIR SINE MIR 0 262 28 * 654 313 43 0 chr1 47766924 47767135 -194897218 - MIR SINE MIR -3 259 40 534 275 44 22 chr1 47767665 47767861 -194896492 - MIR SINE MIR -38 170 17 719 273 5 38 chr1 47767984 47768193 -194896160 + MIR SINE MIR 13 214 -48 1791 184 3 0 chr1 47768240 47768549 -194895804 + AluJb SINE Alu 3 312 0 530 295 28 47 chr1 47769010 47769263 -194895090 + MIR SINE MIR 3 252 -10 1232 149 0 0 chr1 47769522 47769696 -194894657 - AluJb SINE Alu -8 304 131 261 139 0 0 chr1 47769726 47769769 -194894584 + (TG)n Simple_repeat Simple_repeat 2 44 0 672 111 0 0 chr1 47769790 47769880 -194894473 - AluJb SINE Alu -192 120 31 556 259 90 38 chr1 47770033 47770245 -194894108 + L2 LINE L2 3073 3295 -18 2293 92 0 0 chr1 47771263 47771578 -194892775 + AluSx SINE Alu 1 315 0 270 248 37 55 chr1 47771832 47771941 -194892412 + MIR SINE MIR 106 212 -50 433 304 94 10 chr1 47772277 47772478 -194891875 - MIR SINE MIR -16 246 29 198 368 73 15 chr1 47772473 47772609 -194891744 - L3 LINE CR1 -39 1538 1395 * 2391 101 0 0 chr1 47772609 47772907 -194891446 - AluY SINE Alu -13 298 1 25 0 0 0 chr1 47772914 47772939 -194891414 + AT_rich Low_complexity Low_complexity 1 25 0 867 122 0 8 chr1 47772950 47773073 -194891280 - FLAM_C SINE Alu -16 127 6 376 274 157 10 chr1 47773375 47773579 -194890774 + L2 LINE L2 1190 1423 -1891 248 327 27 36 chr1 47773982 47774092 -194890261 + MER5A DNA MER1_type 25 133 -56 725 165 15 15 chr1 47774542 47774675 -194889678 - FLAM_C SINE Alu 0 133 1 198 262 33 33 chr1 47774675 47774736 -194889617 - MIR SINE MIR -61 147 87 1908 132 12 73 chr1 47776007 47776438 -194887915 - AluSx SINE Alu 0 411 1 2312 102 26 0 chr1 47776460 47776765 -194887588 - AluSq SINE Alu 0 313 1 866 150 0 0 chr1 47776787 47776914 -194887439 - FLAM_C SINE Alu -16 127 1 23 68 0 0 chr1 47777709 47777753 -194886600 + AT_rich Low_complexity Low_complexity 1 44 0 2608 58 0 3 chr1 47777831 47778142 -194886211 - AluY SINE Alu -1 310 1 3133 137 88 2 chr1 47778173 47778683 -194885670 - MER41C LTR ERV1 0 554 1 745 239 8 106 chr1 47779008 47779065 -194885288 + MIR SINE MIR 33 94 -168 2258 120 0 16 chr1 47779065 47779381 -194884972 - AluSx SINE Alu -1 311 1 745 239 8 106 chr1 47779381 47779392 -194884961 + MIR SINE MIR 94 104 -158 2385 93 3 0 chr1 47779392 47779693 -194884660 - AluSg SINE Alu -8 302 1 745 239 8 106 chr1 47779693 47779878 -194884475 + MIR SINE MIR 104 262 0 239 333 43 0 chr1 47779893 47779986 -194884367 - MIR SINE MIR 0 262 166 1647 171 49 7 chr1 47780158 47780445 -194883908 + AluJo SINE Alu 1 299 -13 2267 98 3 0 chr1 47780446 47780733 -194883620 + AluSp SINE Alu 1 288 -25 3347 164 75 86 chr1 47781138 47781794 -194882559 - MER21A LTR ERV1 -9 922 260 2207 120 7 3 chr1 47781794 47782103 -194882250 - AluSx SINE Alu -2 310 1 1815 157 13 23 chr1 47782106 47782405 -194881948 - AluJb SINE Alu -16 296 1 3347 164 75 86 chr1 47782405 47782676 -194881677 - MER21A LTR ERV1 -673 258 1 480 204 10 0 chr1 47782968 47783066 -194881287 + L1MD3 LINE L1 7173 7271 -724 596 205 8 0 chr1 47783071 47783188 -194881165 + MLT1F1 LTR MaLR 3 120 -447 1882 173 32 80 chr1 47783191 47783439 -194880914 + L1MD3 LINE L1 7408 7666 -329 2168 130 3 0 chr1 47783439 47783781 -194880572 + AluSx SINE Alu 1 312 0 1290 228 43 33 chr1 47783790 47784093 -194880260 + AluJo SINE Alu 1 306 -6 1882 173 32 80 chr1 47784093 47784296 -194880057 + L1MD3 LINE L1 7674 7847 -148 933 195 13 0 chr1 47784296 47784450 -194879903 - FRAM SINE Alu -21 155 1 641 152 68 0 chr1 47784452 47784584 -194879769 + L1MD3 LINE L1 7839 7979 -16 1803 169 24 0 chr1 47784606 47784725 -194879628 + AluJo SINE Alu 1 116 -196 252 0 0 0 chr1 47784725 47784753 -194879600 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1803 169 24 0 chr1 47784753 47784929 -194879424 + AluJo SINE Alu 116 303 -9 1900 162 0 30 chr1 47785144 47785446 -194878907 - AluJb SINE Alu -18 294 2 250 153 28 69 chr1 47785631 47785703 -194878650 + MIR SINE MIR 183 251 -11 2242 95 0 3 chr1 47785703 47786011 -194878342 - AluSx SINE Alu 0 308 2 207 317 37 0 chr1 47786048 47786130 -194878223 - MIR SINE MIR -12 250 166 818 228 217 16 chr1 47787009 47787382 -194876971 + LTR50 LTR ERVL 2 449 -346 297 206 40 150 chr1 47787397 47787650 -194876703 + LTR50 LTR ERVL 571 795 0 1175 172 63 120 chr1 47788088 47788377 -194875976 - L1MD3 LINE L1 0 8028 7724 788 150 0 16 chr1 47788377 47788504 -194875849 + FLAM_C SINE Alu 1 125 -8 2353 86 3 0 chr1 47788511 47788801 -194875552 + AluSq SINE Alu 1 291 -22 1175 172 63 120 chr1 47788801 47788955 -194875398 - L1MD3 LINE L1 -310 7718 7630 388 284 57 21 chr1 47789222 47789363 -194874990 + MIR SINE MIR 1 146 -116 358 319 9 9 chr1 47789373 47789486 -194874867 + MIR SINE MIR 32 144 -118 1949 153 10 0 chr1 47789566 47789861 -194874492 - AluJb SINE Alu -14 298 1 306 241 149 0 chr1 47789895 47789982 -194874371 + MIR SINE MIR 93 192 -70 320 288 107 63 chr1 47790654 47790859 -194873494 - MIR SINE MIR -27 235 22 268 247 14 41 chr1 47791212 47791285 -194873068 - MIR3 SINE MIR -52 156 86 222 118 0 0 chr1 47791731 47791765 -194872588 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 211 227 102 109 chr1 47791971 47792099 -194872254 + MIR3 SINE MIR 82 208 0 992 111 0 7 chr1 47792361 47792496 -194871857 + AluJo SINE Alu 1 134 -178 2107 110 53 7 chr1 47792512 47792811 -194871542 + AluSq SINE Alu 1 313 0 230 257 62 44 chr1 47793353 47793466 -194870887 + LTR67 LTR ERVL 443 557 0 365 278 90 15 chr1 47793669 47793802 -194870551 + MIR SINE MIR 119 261 -1 522 308 66 0 chr1 47793906 47794088 -194870265 + L3 LINE CR1 875 1068 -509 270 180 0 0 chr1 47794255 47794305 -194870048 + L1M4 LINE L1 4747 4796 -1350 * 389 176 47 0 chr1 47794301 47794386 -194869967 + L1M4 LINE L1 5153 5241 -905 1757 159 43 60 chr1 47794386 47794756 -194869597 + THE1B LTR MaLR 1 364 0 10132 124 28 34 chr1 47794758 47796342 -194868011 + THE1B-int LTR MaLR 3 1576 -4 1385 180 52 51 chr1 47796346 47796689 -194867664 + THE1B LTR MaLR 1 360 -68 2268 119 0 3 chr1 47796689 47797000 -194867353 - AluSg SINE Alu 0 310 1 1385 180 52 51 chr1 47797000 47797070 -194867283 + THE1B LTR MaLR 360 428 0 448 223 50 0 chr1 47797070 47797191 -194867162 + L1M4 LINE L1 5237 5363 -783 882 210 13 0 chr1 47797200 47797357 -194866996 + AluJo SINE Alu 140 298 -14 197 342 8 83 chr1 47797363 47797483 -194866870 - L2 LINE L2 -74 3198 3088 558 277 51 36 chr1 47797562 47797757 -194866596 - MIR SINE MIR -44 218 21 860 127 0 0 chr1 47797874 47797992 -194866361 - FLAM_C SINE Alu -25 118 1 26 50 0 0 chr1 47797999 47798039 -194866314 + AT_rich Low_complexity Low_complexity 1 40 0 188 352 113 28 chr1 47798078 47798220 -194866133 + L2 LINE L2 3032 3185 -87 2258 117 13 0 chr1 47798296 47798469 -194865884 - AluSx SINE Alu -8 304 124 423 0 0 0 chr1 47798469 47798516 -194865837 + (TG)n Simple_repeat Simple_repeat 2 48 0 2258 117 13 0 chr1 47798516 47798642 -194865711 - AluSx SINE Alu -188 124 1 422 333 43 16 chr1 47798655 47798841 -194865512 - MIR SINE MIR -1 261 71 1879 163 0 3 chr1 47799410 47799693 -194864660 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr1 47799697 47799719 -194864634 + (TA)n Simple_repeat Simple_repeat 2 23 0 891 152 0 26 chr1 47799728 47799879 -194864474 + MER5A DNA MER1_type 43 189 0 2377 87 3 3 chr1 47799964 47800263 -194864090 - AluSx SINE Alu -13 299 1 190 265 20 0 chr1 47800549 47800598 -194863755 - MIR SINE MIR -52 210 161 373 198 12 25 chr1 47800716 47800797 -194863556 + MIR SINE MIR 48 127 -135 2061 252 95 64 chr1 47800822 47801084 -194863269 - L2 LINE L2 -7 3306 3053 1928 150 0 10 chr1 47801084 47801384 -194862969 - AluJo SINE Alu -15 297 1 2061 252 95 64 chr1 47801384 47802205 -194862148 - L2 LINE L2 -260 3053 2196 363 231 213 0 chr1 47802181 47802289 -194862064 + MIR SINE MIR 130 260 -2 * 255 285 42 104 chr1 47802322 47802631 -194861722 + L2 LINE L2 2640 2929 -385 193 324 78 0 chr1 47802715 47802817 -194861536 + L2 LINE L2 3132 3241 -31 244 244 81 60 chr1 47802859 47802997 -194861356 - MIR SINE MIR -87 121 25 258 81 0 0 chr1 47803037 47803074 -194861279 + (CA)n Simple_repeat Simple_repeat 2 38 0 786 134 8 0 chr1 47803209 47803328 -194861025 - FLAM_C SINE Alu -22 121 2 225 196 0 0 chr1 47803333 47803389 -194860964 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 228 286 55 11 chr1 47803531 47803622 -194860731 - L2 LINE L2 -260 3012 2918 1888 70 4 0 chr1 47803995 47804225 -194860128 - AluY SINE Alu 0 311 81 1783 137 12 73 chr1 47804243 47804420 -194859933 - AluJo SINE Alu -2 310 161 2341 89 0 10 chr1 47804420 47804724 -194859629 - AluSq SINE Alu -12 301 1 1783 137 12 73 chr1 47804724 47804875 -194859478 - AluJo SINE Alu -151 161 2 270 206 0 0 chr1 47805772 47805835 -194858518 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 180 205 0 0 chr1 47805870 47805909 -194858444 + MIR SINE MIR 123 161 -101 2279 93 0 3 chr1 47805909 47806200 -194858153 + AluSg SINE Alu 1 290 -20 27 0 0 0 chr1 47806215 47806242 -194858111 + AT_rich Low_complexity Low_complexity 1 27 0 285 305 109 8 chr1 47806300 47806428 -194857925 - MIR SINE MIR -31 231 91 23 68 0 0 chr1 47806510 47806554 -194857799 + AT_rich Low_complexity Low_complexity 1 44 0 1072 175 0 26 chr1 47806580 47806769 -194857584 + AluJb SINE Alu 125 308 -4 22 0 0 0 chr1 47806792 47806814 -194857539 + AT_rich Low_complexity Low_complexity 1 22 0 954 240 40 24 chr1 47806815 47807065 -194857288 - MIR SINE MIR 0 262 9 2497 67 0 3 chr1 47807087 47807384 -194856969 + AluY SINE Alu 1 296 -15 198 200 25 0 chr1 47807573 47807613 -194856740 + MIR SINE MIR 105 145 -63 2020 175 7 0 chr1 47807741 47808078 -194856275 - AluJb SINE Alu 0 339 1 523 198 66 0 chr1 47808124 47808230 -194856123 + MER81 DNA DNA 1 113 -1 221 288 63 45 chr1 47808534 47808645 -194855708 + MIR3 SINE MIR 58 170 -38 272 237 92 0 chr1 47808838 47808914 -194855439 + MIR SINE MIR 110 192 -70 741 170 0 15 chr1 47809149 47809284 -194855069 + FLAM_C SINE Alu 1 133 0 193 143 163 0 chr1 47810017 47810066 -194854287 + MIR3 SINE MIR 125 181 -27 1334 178 30 26 chr1 47810138 47810214 -194854139 + MER33 DNA MER1_type 6 80 -2505 1972 104 54 4 chr1 47810214 47810494 -194853859 + AluSq SINE Alu 1 294 -19 1334 178 30 26 chr1 47810494 47810721 -194853632 + MER33 DNA MER1_type 80 310 -14 712 139 0 22 chr1 47810724 47810861 -194853492 + (TTCC)n Simple_repeat Simple_repeat 2 135 0 1556 172 43 60 chr1 47810877 47811179 -194853174 - AluSg SINE Alu -13 297 1 1644 181 0 52 chr1 47811451 47811776 -194852577 + AluJo SINE Alu 1 308 -4 221 253 121 48 chr1 47812218 47812301 -194852052 + MIR SINE MIR 9 97 -165 409 368 24 24 chr1 47812304 47812513 -194851840 - L3 LINE CR1 -178 1399 1191 894 211 31 49 chr1 47812587 47812810 -194851543 + MIR SINE MIR 12 230 -32 243 226 32 0 chr1 47812875 47812937 -194851416 + MLT1K LTR MaLR 201 264 -324 491 211 149 57 chr1 47813175 47813369 -194850984 - MLT1H LTR MaLR -15 534 323 180 263 0 0 chr1 47813380 47813418 -194850935 - L2 LINE L2 -16 3256 3219 615 282 56 44 chr1 47813437 47813689 -194850664 - MIR SINE MIR -6 256 2 255 31 0 0 chr1 47813745 47813777 -194850576 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 212 372 58 0 chr1 47813857 47813943 -194850410 - L2 LINE L2 -3 3269 3179 189 0 0 0 chr1 47813946 47813967 -194850386 + (CAG)n Simple_repeat Simple_repeat 3 23 0 871 172 0 0 chr1 47814159 47814293 -194850060 + FLAM_C SINE Alu 1 134 -9 661 198 189 31 chr1 47814346 47814568 -194849785 - LTR16A1 LTR ERVL -197 260 4 569 193 0 37 chr1 47814666 47814775 -194849578 + FLAM_C SINE Alu 39 143 0 282 56 0 0 chr1 47814787 47814823 -194849530 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 615 106 48 39 chr1 47814823 47814927 -194849426 + AluJo SINE Alu 120 224 -88 1088 148 0 40 chr1 47815052 47815228 -194849125 - AluSx SINE Alu -138 174 6 252 0 0 0 chr1 47815547 47815575 -194848778 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 382 323 45 8 chr1 47815718 47815851 -194848502 + MIR3 SINE MIR 10 147 -61 272 258 91 54 chr1 47816467 47816653 -194847700 - MLT1L LTR MaLR -37 578 386 * 532 233 4 9 chr1 47816643 47816781 -194847572 + MIR SINE MIR 123 262 0 226 237 52 147 chr1 47816766 47816917 -194847436 - MLT1L LTR MaLR -196 419 296 * 1421 172 0 4 chr1 47816917 47817155 -194847198 - L1MB5 LINE L1 -7 6167 5931 226 237 52 147 chr1 47817155 47817235 -194847118 - MLT1L LTR MaLR -319 296 210 984 213 0 6 chr1 47817291 47817474 -194846879 - AluJb SINE Alu -13 299 118 358 253 141 10 chr1 47817474 47817573 -194846780 + L2 LINE L2 3166 3277 -36 1783 193 0 0 chr1 47817613 47817909 -194846444 - AluJb SINE Alu -16 296 1 537 210 137 0 chr1 47818019 47818143 -194846210 + FRAM SINE Alu 6 146 -30 216 0 0 0 chr1 47818144 47818168 -194846185 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1618 172 32 43 chr1 47818276 47818363 -194845990 - MER2 DNA MER2_type 0 345 259 1762 157 64 7 chr1 47818363 47818643 -194845710 + AluJb SINE Alu 1 296 -16 1618 172 32 43 chr1 47818643 47818903 -194845450 - MER2 DNA MER2_type -86 259 2 * 3226 167 35 0 chr1 47818903 47819441 -194844912 - MLT1F1 LTR MaLR -10 557 1 8259 115 20 6 chr1 47820406 47821676 -194842677 - HSMAR1 DNA Mariner 0 1287 1 1766 181 3 0 chr1 47822032 47822366 -194841987 + AluJb SINE Alu 1 335 0 294 273 0 0 chr1 47822909 47822986 -194841367 + A-rich Low_complexity Low_complexity 1 77 0 863 303 105 26 chr1 47823240 47823630 -194840723 - MLT1J2 LTR MaLR 0 450 30 2780 217 59 13 chr1 47824194 47824981 -194839372 + L1ME1 LINE L1 5356 6334 0 1120 285 82 9 chr1 47825004 47825429 -194838924 + L1MC4 LINE L1 7443 7898 -144 21 36 0 0 chr1 47825480 47825508 -194838845 + AT_rich Low_complexity Low_complexity 1 28 0 1500 219 51 21 chr1 47825512 47825942 -194838411 + L1ME LINE L1 5287 5729 -437 497 366 83 26 chr1 47826794 47827253 -194837100 - MLT1K LTR MaLR -64 524 40 2274 117 3 0 chr1 47827898 47828196 -194836157 - AluSq SINE Alu -14 299 1 344 262 277 38 chr1 47828387 47828834 -194835519 + L2 LINE L2 1942 2495 -819 490 243 10 0 chr1 47828859 47828962 -194835391 + MLT1J LTR MaLR 31 134 -377 551 231 253 9 chr1 47828990 47829211 -194835142 + MLT1J LTR MaLR 234 508 -3 263 356 58 23 chr1 47829271 47829614 -194834739 + L2 LINE L2 2623 2977 -337 371 269 15 60 chr1 47829648 47829782 -194834571 - MIR SINE MIR -41 221 94 2276 89 24 0 chr1 47829835 47830126 -194834227 - AluSx SINE Alu -12 300 3 207 271 19 2 chr1 47830180 47830240 -194834113 + MIR SINE MIR 25 85 -123 507 298 84 0 chr1 47830248 47830426 -194833927 + MLT1J LTR MaLR 1 193 -318 260 244 90 0 chr1 47830549 47830627 -194833726 + MLT1J LTR MaLR 278 362 -149 1788 146 71 4 chr1 47830692 47830973 -194833380 + AluJo SINE Alu 1 300 -12 198 333 0 0 chr1 47830998 47831076 -194833277 - MIR SINE MIR -2 260 183 * 277 274 4 16 chr1 47831059 47831158 -194833195 + MIR SINE MIR 58 135 -73 225 263 88 29 chr1 47831526 47831663 -194832690 - L3 LINE CR1 -316 1261 1117 343 280 97 27 chr1 47831708 47831894 -194832459 - MIR SINE MIR -16 246 48 800 110 28 0 chr1 47832079 47832188 -194832165 + AluJb SINE Alu 1 112 -200 661 107 10 0 chr1 47832272 47832375 -194831978 - AluSp/q SINE Alu -10 303 200 1303 147 10 0 chr1 47832475 47832673 -194831680 + AluSg/x SINE Alu 110 309 -1 3152 119 62 41 chr1 47832674 47832974 -194831379 + Tigger3(Golem) DNA MER2_type 2438 2730 -299 2182 141 0 0 chr1 47832974 47833286 -194831067 - AluSx SINE Alu 0 312 1 3152 119 62 41 chr1 47833286 47833565 -194830788 + Tigger3(Golem) DNA MER2_type 2730 3029 0 411 300 23 8 chr1 47833581 47833711 -194830642 + L2 LINE L2 3182 3313 0 844 166 86 0 chr1 47834609 47834760 -194829593 + FRAM SINE Alu 1 164 -2 604 285 56 0 chr1 47834802 47834981 -194829372 - MIR SINE MIR 0 262 74 26 88 0 0 chr1 47835167 47835235 -194829118 + GC_rich Low_complexity Low_complexity 1 68 0 182 37 37 0 chr1 47836016 47836043 -194828310 + (CCCTG)n Simple_repeat Simple_repeat 4 31 0 298 354 7 0 chr1 47836437 47836581 -194827772 + (CCTG)n Simple_repeat Simple_repeat 1 145 0 249 345 30 6 chr1 47836555 47836720 -194827633 + (TCTG)n Simple_repeat Simple_repeat 3 171 0 * 1596 175 74 11 chr1 47838076 47838361 -194825992 + AluJo SINE Alu 1 303 -9 382 263 45 38 chr1 47839417 47839550 -194824803 - MIR SINE MIR -21 241 108 376 325 18 17 chr1 47840167 47840343 -194824010 - MIR3 SINE MIR -27 181 7 784 219 92 13 chr1 47841075 47841303 -194823050 + MIR SINE MIR 17 262 0 260 326 33 0 chr1 47841496 47841588 -194822765 - MIR SINE MIR -51 211 117 203 240 0 51 chr1 47842144 47842222 -194822131 + MIR SINE MIR 102 174 -63 232 207 69 0 chr1 47843442 47843500 -194820853 - MIR SINE MIR -62 146 85 524 309 13 13 chr1 47843774 47843923 -194820430 - MIR SINE MIR -112 150 2 1528 155 26 11 chr1 47843966 47844230 -194820123 - AluJo SINE Alu -2 310 43 320 264 24 91 chr1 47844702 47844910 -194819443 + L2 LINE L2 2943 3136 -136 195 277 0 0 chr1 47844940 47844987 -194819366 + L2 LINE L2 3217 3263 -9 193 204 23 0 chr1 47845115 47845159 -194819194 - L2 LINE L2 -348 2966 2922 496 315 20 25 chr1 47845320 47845517 -194818836 - MIR SINE MIR -49 213 18 356 304 9 61 chr1 47845990 47846204 -194818149 + MIR SINE MIR 17 219 -43 2088 163 0 0 chr1 47846225 47846531 -194817822 - AluJo SINE Alu -6 306 1 569 257 46 0 chr1 47846861 47847013 -194817340 - MIR SINE MIR -34 228 70 920 233 54 21 chr1 47847283 47847523 -194816830 - MIR SINE MIR -1 261 14 2228 96 0 4 chr1 47847604 47847885 -194816468 + AluSx SINE Alu 1 280 -32 333 0 0 0 chr1 47847885 47847922 -194816431 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 586 293 75 54 chr1 47848046 47848639 -194815714 - L2 LINE L2 -41 3231 2621 254 243 126 36 chr1 47849082 47849193 -194815160 - MIR3 SINE MIR -40 168 48 405 271 97 0 chr1 47849454 47849611 -194814742 - MIR SINE MIR -70 192 21 1863 228 111 23 chr1 47850973 47851494 -194812859 + MER115 DNA AcHobo 127 693 0 216 97 0 0 chr1 47852435 47852466 -194811887 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 422 216 52 0 chr1 47852466 47852563 -194811790 - L2 LINE L2 -17 3296 3195 355 252 15 0 chr1 47853052 47853164 -194811189 - MIR SINE MIR -60 148 83 319 226 121 16 chr1 47853791 47853915 -194810438 - MIR3 SINE MIR -34 174 38 224 309 97 48 chr1 47854248 47854413 -194809940 - MIR3 SINE MIR -32 176 4 617 258 45 7 chr1 47855280 47855435 -194808918 + MIR3 SINE MIR 21 181 -27 889 221 70 106 chr1 47855440 47855513 -194808840 + L2 LINE L2 2531 2605 -709 2121 126 0 7 chr1 47855513 47855806 -194808547 + AluJb SINE Alu 12 302 -10 2288 131 0 0 chr1 47855814 47856119 -194808234 + 7SLRNA srpRNA srpRNA 4 308 -12 182 36 0 36 chr1 47856119 47856147 -194808206 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 889 221 70 106 chr1 47856147 47856507 -194807846 + L2 LINE L2 2610 2958 -356 2616 51 0 0 chr1 47856813 47857109 -194807244 - AluY SINE Alu -15 296 1 272 227 45 11 chr1 47857927 47858015 -194806338 + MER91A DNA MER1_type 1 91 -105 206 301 0 48 chr1 47858243 47858326 -194806027 - MIR3 SINE MIR -14 194 116 1277 165 62 9 chr1 47858864 47859088 -194805265 + AluJo SINE Alu 60 295 -17 1153 312 143 36 chr1 47859444 47860751 -194803602 + L2 LINE L2 1294 2788 -526 2463 62 17 0 chr1 47860751 47861042 -194803311 + AluSx SINE Alu 1 296 -16 1153 312 143 36 chr1 47861042 47861255 -194803098 + L2 LINE L2 2788 2977 -337 633 133 0 0 chr1 47861915 47862020 -194802333 - L1MB7 LINE L1 -7 6177 6073 292 330 85 0 chr1 47862029 47862147 -194802206 + MIR SINE MIR 111 238 -24 885 204 33 0 chr1 47862357 47862538 -194801815 + MER5A DNA MER1_type 1 187 -2 404 241 36 27 chr1 47863266 47863378 -194800975 + MIR SINE MIR 34 146 -62 1938 132 3 27 chr1 47863409 47863705 -194800648 - AluJb SINE Alu -18 294 6 1023 294 124 23 chr1 47864029 47864804 -194799549 - L2 LINE L2 -180 3133 2258 2532 84 0 0 chr1 47864885 47865195 -194799158 - AluY SINE Alu -1 310 1 2401 101 0 0 chr1 47865195 47865502 -194798851 - AluSq SINE Alu -6 307 1 1892 135 32 0 chr1 47865578 47865884 -194798469 + AluJb SINE Alu 1 312 0 2470 90 0 6 chr1 47866107 47866418 -194797935 + AluSc SINE Alu 1 309 0 262 290 93 19 chr1 47866941 47867048 -194797305 - MIR SINE MIR -61 147 33 392 309 29 57 chr1 47867565 47867740 -194796613 + MIR3 SINE MIR 32 201 -7 243 125 0 0 chr1 47870274 47870314 -194794039 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 192 369 0 0 chr1 47871514 47871579 -194792774 - MIR SINE MIR -140 122 58 278 279 29 37 chr1 47871821 47871957 -194792396 - L2 LINE L2 -1155 2159 2025 349 263 164 13 chr1 47872818 47872970 -194791383 - L2 LINE L2 -7 3306 3132 755 270 57 9 chr1 47873005 47873235 -194791118 - MIR SINE MIR -17 245 5 592 286 29 11 chr1 47877460 47877635 -194786718 + MER5A DNA MER1_type 7 184 -5 534 309 13 0 chr1 47878052 47878201 -194786152 + MIR3 SINE MIR 41 191 -17 262 318 0 0 chr1 47878332 47878398 -194785955 - L2 LINE L2 -21 3251 3186 188 330 32 0 chr1 47878529 47878623 -194785730 - L2 LINE L2 -300 2972 2876 437 240 0 32 chr1 47878856 47878983 -194785370 + MIR SINE MIR 44 165 -65 674 199 250 6 chr1 47879463 47879639 -194784714 - MER20 DNA MER1_type 0 219 1 476 322 70 12 chr1 47879673 47879844 -194784509 + MIR SINE MIR 20 200 -62 344 270 102 22 chr1 47880110 47880247 -194784106 - L3 LINE CR1 -6 1571 1424 264 240 120 10 chr1 47881473 47881573 -194782780 + MER91C DNA MER1_type 23 133 -7 267 266 151 0 chr1 47882495 47882618 -194781735 + MIR3 SINE MIR 6 154 -63 1053 241 53 0 chr1 47882677 47882905 -194781448 + MIR SINE MIR 10 249 -13 378 254 132 0 chr1 47882947 47883061 -194781292 - MIR SINE MIR -15 247 119 444 321 7 7 chr1 47883197 47883337 -194781016 + MIR3 SINE MIR 54 193 -15 1801 91 8 4 chr1 47884327 47884570 -194779783 + AluSq SINE Alu 51 294 -19 279 128 0 0 chr1 47884570 47884617 -194779736 - MER112 DNA MER1_type -213 47 1 1740 165 3 41 chr1 47884865 47885180 -194779173 + AluJb SINE Alu 1 303 -9 303 250 62 31 chr1 47885358 47885454 -194778899 + L2 LINE L2 2372 2470 -844 217 274 24 36 chr1 47885520 47885604 -194778749 + L2 LINE L2 2625 2707 -607 905 115 0 34 chr1 47885613 47885761 -194778592 + FLAM_C SINE Alu 1 143 0 3955 239 149 5 chr1 47886743 47888064 -194776289 - L2 LINE L2 0 3313 1809 1704 165 9 22 chr1 47888276 47888592 -194775761 - AluJb SINE Alu 0 312 1 483 229 35 59 chr1 47891722 47891892 -194772461 - MLT1K LTR MaLR 0 588 423 668 242 107 49 chr1 47891966 47892372 -194771981 - LTR50 LTR ERVL 0 795 279 510 204 173 21 chr1 47892361 47892527 -194771826 - LTR50 LTR ERVL -591 182 16 * 1848 263 50 51 chr1 47892791 47893055 -194771298 - ERVL LTR ERVL -240 5524 5261 2316 97 0 0 chr1 47893055 47893353 -194771000 - AluSc SINE Alu -11 298 1 1848 263 50 51 chr1 47893353 47893769 -194770584 - ERVL LTR ERVL -503 5261 4843 1969 220 73 27 chr1 47893769 47894251 -194770102 + MLT1D LTR MaLR 1 504 -1 1848 263 50 51 chr1 47894251 47894332 -194770021 - ERVL LTR ERVL -921 4843 4763 1655 316 19 5 chr1 47894324 47894903 -194769450 - ERVL LTR ERVL -1360 4404 3818 * 536 350 27 35 chr1 47894903 47895340 -194769013 - L2 LINE L2 -261 3011 2580 307 262 74 60 chr1 47895351 47895500 -194768853 - L2 LINE L2 -1 3271 3121 849 241 52 94 chr1 47895621 47895674 -194768679 - MLT1H LTR MaLR 0 549 495 1959 130 10 7 chr1 47895674 47895997 -194768356 + AluSx SINE Alu 1 312 0 849 241 52 94 chr1 47895997 47896324 -194768029 - MLT1H LTR MaLR -54 495 185 754 221 10 35 chr1 47896623 47896822 -194767531 - MLT1B LTR MaLR 0 390 197 267 103 0 0 chr1 47896870 47896909 -194767444 + (TCC)n Simple_repeat Simple_repeat 2 40 0 4880 117 27 19 chr1 47896933 47897798 -194766555 - L1PA16 LINE L1 -1 6165 5294 1122 148 0 0 chr1 47897798 47897987 -194766366 - MLT1B LTR MaLR -201 189 1 572 311 75 37 chr1 47898420 47898807 -194765546 - LTR16A LTR ERVL 0 457 53 264 295 96 18 chr1 47898836 47899019 -194765334 + MLT1H LTR MaLR 81 286 -123 840 194 0 7 chr1 47899604 47899759 -194764594 + FRAM SINE Alu 7 160 -16 553 315 76 8 chr1 47900127 47900378 -194763975 - L2 LINE L2 0 3313 3046 351 226 12 12 chr1 47900399 47900483 -194763870 - MIR3 SINE MIR -11 197 114 398 302 26 0 chr1 47900618 47900734 -194763619 + L2 LINE L2 3195 3313 0 226 258 30 0 chr1 47902989 47903055 -194761298 + L3b LINE CR1 1316 1383 -200 276 260 27 0 chr1 47903571 47903644 -194760709 + MIR3 SINE MIR 91 165 -43 264 282 0 51 chr1 47903789 47903867 -194760486 - MIR SINE MIR -76 132 59 187 279 163 23 chr1 47903877 47903963 -194760390 - L2 LINE L2 -18 3254 3157 323 338 54 14 chr1 47904456 47904604 -194759749 - MIR SINE MIR -15 247 94 387 0 0 0 chr1 47904640 47904683 -194759670 + (TG)n Simple_repeat Simple_repeat 2 44 0 351 250 72 31 chr1 47904897 47905047 -194759306 + MIR3 SINE MIR 1 153 -71 2448 59 0 3 chr1 47905381 47905688 -194758665 - AluY SINE Alu 0 311 6 27 0 0 0 chr1 47906407 47906434 -194757919 + AT_rich Low_complexity Low_complexity 1 27 0 1976 134 3 3 chr1 47906434 47906726 -194757627 - AluSx SINE Alu -20 292 1 924 291 72 65 chr1 47907353 47908078 -194756275 + HAL1 LINE L1 964 1693 -814 314 217 116 31 chr1 47908634 47908763 -194755590 + MIR SINE MIR 76 215 -47 285 29 0 0 chr1 47908767 47908801 -194755552 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1533 127 0 0 chr1 47908835 47909048 -194755305 - AluJb SINE Alu -99 213 1 2461 58 0 16 chr1 47909372 47909685 -194754668 + AluSc SINE Alu 1 308 -1 248 274 185 7 chr1 47909752 47909898 -194754455 - L2 LINE L2 -1 3271 3100 384 310 26 0 chr1 47909973 47910089 -194754264 + L2 LINE L2 3195 3313 0 184 405 36 25 chr1 47910125 47910399 -194753954 - L2 LINE L2 -181 3091 2815 403 314 20 23 chr1 47910931 47911101 -194753252 + MIR SINE MIR 19 186 -76 1743 142 31 17 chr1 47912959 47913247 -194751106 + AluJb SINE Alu 1 292 -20 21 36 0 0 chr1 47913911 47913939 -194750414 + AT_rich Low_complexity Low_complexity 1 28 0 512 274 37 12 chr1 47915280 47915444 -194748909 + MIR3 SINE MIR 35 202 -6 197 383 12 0 chr1 47915733 47915814 -194748539 + MIR SINE MIR 163 244 -18 258 122 0 41 chr1 47916865 47916914 -194747439 - L2 LINE L2 0 3272 3226 2051 112 13 13 chr1 47917028 47917331 -194747022 - AluSx SINE Alu -9 303 1 2225 104 3 10 chr1 47921378 47921677 -194742676 + AluSx SINE Alu 1 297 -15 401 182 0 43 chr1 47921722 47921909 -194742444 + (TA)n Simple_repeat Simple_repeat 1 179 0 303 233 0 0 chr1 47924196 47924256 -194740097 + L2 LINE L2 3213 3272 0 2321 86 7 3 chr1 47924294 47924586 -194739767 - AluSg SINE Alu -17 293 1 777 168 0 0 chr1 47924615 47924740 -194739613 - FLAM_C SINE Alu -8 125 1 1522 177 8 4 chr1 47924892 47925152 -194739201 + AluJo SINE Alu 30 290 -22 278 292 100 23 chr1 47925313 47925443 -194738910 + L2 LINE L2 2915 3054 -218 356 190 13 0 chr1 47925484 47925563 -194738790 + (CA)n Simple_repeat Simple_repeat 2 81 0 1873 153 3 13 chr1 47925563 47925863 -194738490 - AluJb SINE Alu -11 301 5 767 201 52 13 chr1 47925868 47926022 -194738331 - FRAM SINE Alu -11 165 6 375 323 81 0 chr1 47926099 47926223 -194738130 + L2 LINE L2 3137 3270 -2 273 303 91 48 chr1 47926558 47926723 -194737630 - MIR3 SINE MIR -14 194 23 322 240 157 8 chr1 47928213 47928334 -194736019 + L2 LINE L2 3175 3313 0 464 262 16 8 chr1 47930986 47931108 -194733245 + L2 LINE L2 3191 3313 0 203 171 0 0 chr1 47931338 47931379 -194732974 + A-rich Low_complexity Low_complexity 1 41 0 323 262 0 12 chr1 47932194 47932278 -194732075 - MIR SINE MIR -78 130 48 261 279 63 0 chr1 47932384 47932463 -194731890 + MIR SINE MIR 161 244 -18 387 231 16 66 chr1 47932617 47932738 -194731615 + MIR SINE MIR 84 198 -64 1846 146 10 27 chr1 47933077 47933378 -194730975 + AluJb SINE Alu 1 296 -16 2157 112 17 0 chr1 47933378 47933672 -194730681 + AluSq SINE Alu 1 299 -14 184 387 80 7 chr1 47935813 47935963 -194728390 - L2 LINE L2 -212 3060 2900 534 262 11 78 chr1 47937108 47937216 -194727137 + MER5B DNA MER1_type 1 92 -86 1711 115 166 27 chr1 47937216 47937512 -194726841 - MER1B DNA MER1_type 0 337 1 534 262 11 78 chr1 47937512 47937594 -194726759 + MER5B DNA MER1_type 92 178 0 432 229 138 21 chr1 47937605 47937769 -194726584 + MER5A DNA MER1_type 4 189 0 284 188 0 0 chr1 47938813 47938861 -194725492 - L2 LINE L2 -14 3299 3252 1563 181 142 60 chr1 47939141 47939308 -194725045 + L1MB1 LINE L1 5666 5818 -350 1552 169 26 52 chr1 47939308 47939615 -194724738 + AluJo SINE Alu 1 299 -13 2188 136 0 3 chr1 47939615 47939925 -194724428 + AluJb SINE Alu 1 309 -3 1563 181 142 60 chr1 47939925 47940003 -194724350 + L1MB1 LINE L1 5818 5888 -280 2185 145 6 11 chr1 47940003 47940368 -194723985 - MER47A DNA MER2_type 0 366 4 1563 181 142 60 chr1 47940368 47940585 -194723768 + L1MB1 LINE L1 5888 6168 0 540 272 75 6 chr1 47941077 47941250 -194723103 + L2 LINE L2 3129 3313 0 277 325 86 13 chr1 47941558 47941709 -194722644 + L2 LINE L2 2871 3032 -240 1374 122 19 9 chr1 47941899 47942112 -194722241 + MER20 DNA MER1_type 1 215 -4 674 217 8 0 chr1 47943187 47943316 -194721037 + FLAM_A SINE Alu 1 130 -3 2836 10 0 0 chr1 47943317 47943617 -194720736 + AluYa5 SINE Alu 1 300 -11 1796 95 0 0 chr1 47943890 47944112 -194720241 + AluSq SINE Alu 1 222 -91 1786 137 3 43 chr1 47944212 47944512 -194719841 - AluJb SINE Alu -24 288 1 686 214 104 45 chr1 47944513 47944623 -194719730 - MER58A DNA MER1_type -2207 213 111 2071 118 7 0 chr1 47944623 47944930 -194719423 + AluSx SINE Alu 1 309 0 686 214 104 45 chr1 47944930 47945017 -194719336 - MER58A DNA MER1_type -2309 111 1 211 320 10 31 chr1 47945894 47945991 -194718362 - MIR3 SINE MIR -99 109 15 4649 117 44 48 chr1 47946341 47946631 -194717722 - Tigger1 DNA MER2_type -44 2374 2084 225 65 0 0 chr1 47946631 47946662 -194717691 + (TG)n Simple_repeat Simple_repeat 2 32 0 2350 89 0 0 chr1 47946662 47946953 -194717400 - AluSq SINE Alu -22 291 1 4649 117 44 48 chr1 47946953 47946979 -194717374 - Tigger1 DNA MER2_type -333 2085 2060 1678 154 4 29 chr1 47946979 47947252 -194717101 - AluJb SINE Alu -46 266 1 4649 117 44 48 chr1 47947252 47947729 -194716624 - Tigger1 DNA MER2_type -358 2060 1582 243 79 0 0 chr1 47947736 47947774 -194716579 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1023 185 0 0 chr1 47947774 47947930 -194716423 - AluJb SINE Alu -27 285 130 3168 151 50 22 chr1 47948309 47948551 -194715802 - MER6A DNA MER2_type -263 602 368 2173 103 0 39 chr1 47948551 47948862 -194715491 + AluSc SINE Alu 1 299 -10 2193 101 14 0 chr1 47948862 47949150 -194715203 + AluSx SINE Alu 1 292 -20 3168 151 50 22 chr1 47949150 47949462 -194714891 - MER6A DNA MER2_type -496 369 31 340 125 0 0 chr1 47949803 47949851 -194714502 + Tigger1 DNA MER2_type 6 53 -2365 * 5641 99 124 38 chr1 47949846 47949994 -194714359 + Tigger1 DNA MER2_type 320 454 -1964 1233 158 57 108 chr1 47949994 47950291 -194714062 + AluJo SINE Alu 1 282 -30 5641 99 124 38 chr1 47950291 47950359 -194713994 + Tigger1 DNA MER2_type 454 515 -1903 2239 97 0 10 chr1 47950359 47950658 -194713695 + AluSx SINE Alu 1 296 -16 5641 99 124 38 chr1 47950658 47951400 -194712953 + Tigger1 DNA MER2_type 515 1362 -1056 2339 94 0 0 chr1 47951400 47951698 -194712655 + AluSx SINE Alu 1 298 -14 1577 83 0 0 chr1 47951798 47952003 -194712350 + L1PA5 LINE L1 5945 6149 -5 2464 114 30 94 chr1 47952011 47952510 -194711843 + L1MA5A LINE L1 5821 6287 -10 615 286 0 6 chr1 47952515 47952690 -194711663 - MIR SINE MIR -77 185 12 1740 198 62 75 chr1 47952725 47953260 -194711093 + L1MC5 LINE L1 6660 7187 -774 530 222 30 44 chr1 47953264 47953399 -194710954 - AluJo SINE Alu -68 244 112 714 163 85 19 chr1 47953425 47953689 -194710664 + L1MC5 LINE L1 7605 7909 -52 276 77 0 0 chr1 47953862 47953901 -194710452 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 295 30 0 0 chr1 47953963 47953996 -194710357 - U2 snRNA snRNA -155 33 1 2095 229 57 97 chr1 47953997 47954085 -194710268 + L2 LINE L2 1224 1314 -2000 692 159 71 18 chr1 47954085 47954255 -194710098 - MER104 DNA MER2_type -1 179 1 2095 229 57 97 chr1 47954255 47954595 -194709758 + L2 LINE L2 1314 1666 -1648 2354 80 0 0 chr1 47954595 47954884 -194709469 - AluSx SINE Alu -23 289 1 2095 229 57 97 chr1 47954884 47954930 -194709423 + L2 LINE L2 1666 1712 -1602 1743 172 17 3 chr1 47954930 47955227 -194709126 - AluJb SINE Alu -11 301 1 2095 229 57 97 chr1 47955227 47955675 -194708678 + L2 LINE L2 1712 2111 -1203 467 286 52 7 chr1 47956558 47956712 -194707641 - MIR SINE MIR -82 180 20 2319 101 7 10 chr1 47958166 47958472 -194705881 - AluSx SINE Alu -7 305 1 416 239 99 89 chr1 47958476 47958582 -194705771 - L1M4 LINE L1 -1542 4604 4501 2525 82 3 0 chr1 47958582 47958886 -194705467 - AluSq SINE Alu -8 305 1 416 239 99 89 chr1 47958886 47959056 -194705297 - L1M4 LINE L1 -1645 4501 4334 1642 185 35 0 chr1 47959056 47959342 -194705011 + AluJo SINE Alu 1 296 -16 416 239 99 89 chr1 47959342 47959557 -194704796 - L1M4 LINE L1 -1812 4334 4107 741 254 0 43 chr1 47959557 47959742 -194704611 + MER8 DNA MER2_type 1 177 -62 477 127 0 25 chr1 47959768 47959847 -194704506 - Tigger2 DNA MER2_type -2641 77 1 798 204 171 0 chr1 47960154 47960335 -194704018 - MER58A DNA MER1_type -12 212 1 2655 48 0 3 chr1 47960457 47960766 -194703587 + AluY SINE Alu 1 308 -3 6257 24 0 0 chr1 47960859 47961573 -194702780 - L1PA3 LINE L1 -1 6154 5441 2973 156 31 118 chr1 47961734 47961803 -194702550 - L1MB7 LINE L1 0 6184 6111 2191 121 0 10 chr1 47961803 47962100 -194702253 + AluSx SINE Alu 1 294 -18 2973 156 31 118 chr1 47962100 47962373 -194701980 - L1MB7 LINE L1 -73 6111 5816 1325 189 143 4 chr1 47962373 47962638 -194701715 - AluJb SINE Alu 0 302 1 2973 156 31 118 chr1 47962638 47962921 -194701432 - L1MB7 LINE L1 -368 5816 5510 1724 112 140 0 chr1 47962921 47963196 -194701157 + AluSx SINE Alu 1 310 0 2973 156 31 118 chr1 47963196 47963261 -194701092 - L1MB7 LINE L1 -674 5510 5600 1540 147 6 92 chr1 47963261 47963386 -194700967 + AluJo SINE Alu 11 145 -167 2373 87 0 0 chr1 47963386 47963674 -194700679 - AluY SINE Alu -23 288 1 1540 147 6 92 chr1 47963674 47963875 -194700478 + AluJo SINE Alu 145 309 -3 2973 156 31 118 chr1 47963875 47964077 -194700276 - L1MB7 LINE L1 -583 5601 5383 259 200 0 0 chr1 47964119 47964164 -194700189 - L1MB7 LINE L1 -766 5400 5356 210 176 0 0 chr1 47964171 47964222 -194700131 + (TA)n Simple_repeat Simple_repeat 1 51 0 2004 184 21 58 chr1 47964224 47964741 -194699612 - L1MB7 LINE L1 -782 5364 4867 1469 139 171 0 chr1 47965145 47965397 -194698956 + AluJo SINE Alu 9 303 -9 2202 83 38 17 chr1 47965538 47965828 -194698525 - AluY SINE Alu -15 296 1 550 295 95 5 chr1 47966408 47966618 -194697735 + MIR SINE MIR 34 262 0 1033 165 0 6 chr1 47967357 47967521 -194696832 - FRAM SINE Alu -20 156 1 2470 73 0 0 chr1 47967799 47968101 -194696252 - AluY SINE Alu -9 302 1 2121 97 65 0 chr1 47968705 47968995 -194695358 - AluSc SINE Alu 0 309 1 2401 107 0 0 chr1 47970257 47970566 -194693787 - AluSc SINE Alu 0 309 1 27 0 0 0 chr1 47972083 47972110 -194692243 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr1 47972474 47972503 -194691850 + AT_rich Low_complexity Low_complexity 1 29 0 2258 120 0 0 chr1 47972573 47972882 -194691471 - AluSg SINE Alu -1 309 1 2283 88 0 41 chr1 47972980 47973298 -194691055 - AluY SINE Alu -6 305 1 1169 53 0 0 chr1 47973300 47973431 -194690922 - AluY SINE Alu -180 131 1 1546 174 3 42 chr1 47973431 47973718 -194690635 - AluJo SINE Alu -15 297 22 189 0 0 0 chr1 47973720 47973741 -194690612 + (T)n Simple_repeat Simple_repeat 1 21 0 437 293 64 21 chr1 47974129 47974317 -194690036 + MARNA DNA Mariner 43 238 -348 1424 168 38 41 chr1 47975143 47975434 -194688919 + AluJb SINE Alu 5 294 -18 3704 148 21 17 chr1 47975663 47975935 -194688418 - L1MB1 LINE L1 -23 6145 5876 1624 171 41 17 chr1 47975935 47976106 -194688247 - AluJo SINE Alu -12 300 118 225 0 0 0 chr1 47976106 47976131 -194688222 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1624 171 41 17 chr1 47976131 47976252 -194688101 - AluJo SINE Alu -194 118 1 3704 148 21 17 chr1 47976252 47976643 -194687710 - L1MB1 LINE L1 -292 5876 5479 518 162 50 0 chr1 47976896 47976995 -194687358 + L1MB4 LINE L1 6071 6174 -6 1953 103 4 4 chr1 47977036 47977297 -194687056 + AluSx SINE Alu 45 305 -7 566 144 0 0 chr1 47978172 47978262 -194686091 - AluJ/FRAM SINE Alu -4 308 219 1656 156 0 8 chr1 47978295 47978552 -194685801 - AluJb SINE Alu -57 255 1 25 0 0 0 chr1 47978571 47978596 -194685757 + AT_rich Low_complexity Low_complexity 1 25 0 2400 109 0 0 chr1 47978669 47978982 -194685371 - AluSq SINE Alu 0 313 1 2363 95 3 0 chr1 47979006 47979312 -194685041 - AluSq SINE Alu -6 307 1 2147 108 4 0 chr1 47980267 47980575 -194683778 - AluSg SINE Alu 0 309 1 2150 133 0 9 chr1 47981149 47981464 -194682889 + AluJo SINE Alu 1 312 0 1753 136 16 0 chr1 47981531 47981782 -194682571 + AluSp SINE Alu 1 255 -58 6804 122 35 87 chr1 47981785 47983681 -194680672 - pTR5 LTR ERV1 0 2438 844 2110 86 15 4 chr1 47983681 47983950 -194680403 - AluSx SINE Alu -40 272 1 2519 90 0 0 chr1 47984620 47984932 -194679421 - AluSx SINE Alu 0 312 1 450 284 102 0 chr1 47984974 47985101 -194679252 - MER5B DNA MER1_type 0 178 39 334 291 67 34 chr1 47985403 47985582 -194678771 - L2 LINE L2 -975 2339 2155 747 256 132 114 chr1 47985625 47985727 -194678626 - L2 LINE L2 -639 2675 2576 1783 173 0 13 chr1 47985727 47985891 -194678462 - AluJo SINE Alu -14 298 138 2191 91 34 3 chr1 47985891 47986189 -194678164 - AluSp SINE Alu -6 307 1 1783 173 0 13 chr1 47986189 47986325 -194678028 - AluJo SINE Alu -174 138 2 747 256 132 114 chr1 47986325 47986996 -194677357 - L2 LINE L2 -738 2576 1888 758 262 82 57 chr1 47986998 47987212 -194677141 - L1MC/D LINE L1 -469 5652 5425 2394 89 3 0 chr1 47987212 47987516 -194676837 - AluSp SINE Alu -8 305 1 758 262 82 57 chr1 47987516 47987689 -194676664 - L1MC/D LINE L1 -696 5425 5258 1482 163 100 0 chr1 47988169 47988420 -194675933 + AluJo SINE Alu 1 276 -36 301 176 27 0 chr1 47988469 47988543 -194675810 + CT-rich Low_complexity Low_complexity 1 76 0 286 315 0 0 chr1 47988543 47988635 -194675718 - L1ME LINE L1 -414 5707 5616 244 329 116 0 chr1 47988641 47988796 -194675557 - L1ME LINE L1 -531 5590 5418 791 226 30 17 chr1 47988799 47989034 -194675319 + L2 LINE L2 2366 2603 -711 1897 194 80 2 chr1 47989157 47989558 -194674795 + L1MD2 LINE L1 5745 6176 -183 4098 31 8 0 chr1 47989559 47990037 -194674316 + L1PA4 LINE L1 5674 6155 0 21 57 0 0 chr1 47990091 47990126 -194674227 + AT_rich Low_complexity Low_complexity 1 35 0 2300 116 0 0 chr1 47990214 47990517 -194673836 + AluSq SINE Alu 1 303 -10 2783 122 33 4 chr1 47990517 47990976 -194673377 + L1MC1 LINE L1 5796 6267 -66 2403 81 0 7 chr1 47990978 47991273 -194673080 - AluSq SINE Alu -20 293 1 21 0 0 0 chr1 47991420 47991441 -194672912 + AT_rich Low_complexity Low_complexity 1 21 0 1684 186 0 16 chr1 47991493 47991800 -194672553 - AluJo SINE Alu -10 302 1 538 269 50 34 chr1 47991917 47992237 -194672116 + L1ME4a LINE L1 5551 5875 -246 1949 241 76 60 chr1 47992677 47992874 -194671479 + L1MC4a LINE L1 5262 5454 -2354 1770 139 16 0 chr1 47992874 47993176 -194671177 - AluY SINE Alu 0 328 23 1949 241 76 60 chr1 47993176 47993715 -194670638 + L1MC4a LINE L1 5454 6011 -1797 477 212 20 0 chr1 47993854 47993953 -194670400 - MLT1A1 LTR MaLR -51 314 214 2159 117 0 0 chr1 47993997 47994316 -194670037 - AluSx SINE Alu 0 321 3 1892 102 28 4 chr1 47994400 47994655 -194669698 - AluY SINE Alu -17 294 34 180 77 0 0 chr1 47994727 47994753 -194669600 + (T)n Simple_repeat Simple_repeat 1 26 0 1896 216 95 73 chr1 47994821 47994886 -194669467 + L1ME1 LINE L1 3065 3127 -3019 1982 100 48 7 chr1 47994886 47995176 -194669177 + AluSx SINE Alu 1 302 -10 1896 216 95 73 chr1 47995176 47995678 -194668675 + L1ME1 LINE L1 3127 3656 -2490 2348 103 0 10 chr1 47995678 47995990 -194668363 + AluSq SINE Alu 3 311 -2 1896 216 95 73 chr1 47995990 47996186 -194668167 + L1ME1 LINE L1 3656 3846 -2300 1949 128 0 24 chr1 47996191 47996371 -194667982 + AluSx SINE Alu 24 196 -116 7986 70 2 2 chr1 47996371 47997340 -194667013 + LTR5 LTR ERVK 1 969 0 1949 128 0 24 chr1 47997340 47997455 -194666898 + AluSx SINE Alu 196 312 0 3117 158 20 24 chr1 47997555 47998078 -194666275 + L1MB8 LINE L1 5588 6110 -68 2377 111 0 0 chr1 47998078 47998385 -194665968 + AluSx SINE Alu 1 307 -5 3117 158 20 24 chr1 47998385 47998454 -194665899 + L1MB8 LINE L1 6110 6178 0 2440 93 0 0 chr1 47998470 47998782 -194665571 + AluSx SINE Alu 1 312 0 343 179 11 32 chr1 47998782 47998877 -194665476 + L1ME1 LINE L1 4992 5084 -1062 676 175 18 0 chr1 47998880 47998994 -194665359 - FLAM_A SINE Alu -15 127 12 401 244 64 41 chr1 47999006 47999158 -194665195 + L1ME1 LINE L1 5096 5254 -892 2226 128 141 3 chr1 47999158 47999470 -194664883 + MSTA LTR MaLR 1 375 -53 2091 97 8 0 chr1 47999470 47999738 -194664615 - AluSg SINE Alu 0 310 41 2226 128 141 3 chr1 47999738 47999801 -194664552 + MSTA LTR MaLR 375 428 0 401 244 64 41 chr1 47999801 47999820 -194664533 + L1ME1 LINE L1 5254 5271 -875 744 210 6 12 chr1 47999840 48000002 -194664351 + FRAM SINE Alu 1 161 -15 690 211 11 11 chr1 48000011 48000186 -194664167 + L1ME1 LINE L1 5283 5457 -887 1422 188 88 153 chr1 48000192 48000814 -194663539 - MLT1E LTR MaLR -9 584 3 2151 173 34 49 chr1 48000826 48001028 -194663325 + L1ME1 LINE L1 5458 5661 -505 1615 77 39 4 chr1 48001028 48001249 -194663104 + L1PA8 LINE L1 5929 6169 -3 2151 173 34 49 chr1 48001249 48001519 -194662834 + L1ME1 LINE L1 5661 5923 -243 2743 69 21 51 chr1 48001519 48001708 -194662645 - MER51B LTR ERV1 0 377 205 7959 54 6 3 chr1 48001708 48003482 -194660871 + L1PA6 LINE L1 4380 6154 0 2743 69 21 51 chr1 48003482 48003681 -194660672 - MER51B LTR ERV1 -172 205 1 428 193 12 0 chr1 48003681 48003764 -194660589 + L1ME1 LINE L1 5920 6003 -163 1949 121 61 0 chr1 48004008 48004288 -194660065 + AluSx SINE Alu 1 297 -15 230 354 40 56 chr1 48004305 48004503 -194659850 - MIR SINE MIR -21 241 47 2119 131 0 0 chr1 48004503 48004793 -194659560 + AluSx SINE Alu 1 290 -22 2000 90 101 0 chr1 48004943 48005221 -194659132 + AluSq SINE Alu 1 306 -7 2082 142 14 38 chr1 48005719 48006064 -194658289 + MER1B DNA MER1_type 1 337 0 2316 95 0 16 chr1 48006197 48006502 -194657851 - AluSc SINE Alu -9 300 1 2134 82 68 3 chr1 48007584 48007876 -194656477 + AluSx SINE Alu 1 311 -1 314 256 83 25 chr1 48008226 48008347 -194656006 - MER5A DNA MER1_type -11 178 51 773 159 0 36 chr1 48008355 48008466 -194655887 + FLAM_C SINE Alu 1 108 -204 2234 111 26 34 chr1 48008466 48008844 -194655509 - THE1C LTR MaLR 0 375 1 773 159 0 36 chr1 48008844 48008870 -194655483 + FLAM_C SINE Alu 108 133 -179 1783 134 75 14 chr1 48009329 48009621 -194654732 + AluSx SINE Alu 1 310 -2 269 276 26 26 chr1 48009745 48009861 -194654492 - MER5A DNA MER1_type 0 189 74 2246 89 10 0 chr1 48010280 48010573 -194653780 + AluSx SINE Alu 1 296 -16 2099 211 26 12 chr1 48011098 48011519 -194652834 - MER21B LTR ERV1 -22 841 415 1751 219 34 8 chr1 48011588 48011945 -194652408 - MER21B LTR ERV1 -455 408 43 241 235 61 41 chr1 48011945 48012043 -194652310 - MER21B LTR ERV1 -763 100 1 213 265 0 0 chr1 48013069 48013118 -194651235 - L2 LINE L2 -7 3265 3217 2319 92 3 0 chr1 48013413 48013707 -194650646 - AluSc SINE Alu -14 295 1 2052 154 0 3 chr1 48013920 48014232 -194650121 - AluJo SINE Alu -1 311 1 402 271 76 95 chr1 48014342 48014437 -194649916 + MIR SINE MIR 40 135 -127 2472 75 3 3 chr1 48014437 48014745 -194649608 - AluSg SINE Alu -2 308 1 402 271 76 95 chr1 48014745 48014859 -194649494 + MIR SINE MIR 135 245 -17 2299 95 10 0 chr1 48014861 48015155 -194649198 + AluSx SINE Alu 1 297 -15 280 322 82 38 chr1 48015224 48015385 -194648968 + L2 LINE L2 1366 1545 -1769 2467 84 0 0 chr1 48015385 48015683 -194648670 + AluSx SINE Alu 1 298 -14 280 322 82 38 chr1 48015683 48015788 -194648565 + L2 LINE L2 1545 1644 -1670 2565 62 7 0 chr1 48015879 48016186 -194648167 + AluY SINE Alu 1 309 -2 234 265 34 51 chr1 48016351 48016468 -194647885 - HsTC2 DNA Tc2 -1613 285 171 31 0 0 0 chr1 48016713 48016744 -194647609 + AT_rich Low_complexity Low_complexity 1 31 0 2331 83 0 3 chr1 48016744 48017032 -194647321 - AluY SINE Alu -24 287 1 1909 132 7 23 chr1 48017058 48017361 -194646992 + AluJo SINE Alu 1 298 -14 243 291 63 0 chr1 48017934 48018013 -194646340 + L2 LINE L2 3229 3312 -1 1915 137 3 17 chr1 48018042 48018334 -194646019 - AluJo SINE Alu -22 290 3 265 350 38 19 chr1 48018940 48019131 -194645222 - MIR SINE MIR -41 221 20 2406 57 4 0 chr1 48019752 48020031 -194644322 + AluSc SINE Alu 1 314 0 267 0 29 0 chr1 48020031 48020065 -194644288 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 258 314 12 23 chr1 48021345 48021431 -194642922 + Charlie7 DNA MER1_type 126 210 -2402 341 265 20 0 chr1 48022178 48022276 -194642077 - MIR SINE MIR -1 261 162 216 326 38 53 chr1 48022330 48022594 -194641759 + L2 LINE L2 2718 2977 -337 1510 160 6 97 chr1 48023377 48023513 -194640840 + AluJo SINE Alu 1 148 -164 1868 119 80 7 chr1 48023513 48023799 -194640554 - AluSx SINE Alu -5 307 1 2353 66 0 7 chr1 48023805 48024122 -194640231 - AluY SINE Alu 0 315 1 1510 160 6 97 chr1 48024122 48024307 -194640046 + AluJo SINE Alu 153 301 -11 259 329 55 14 chr1 48025170 48025316 -194639037 + MIR3 SINE MIR 31 182 -26 226 133 0 0 chr1 48025908 48025938 -194638415 + AluJo SINE Alu 5 34 -266 1763 105 0 115 chr1 48025939 48026262 -194638091 + AluJo SINE Alu 21 306 -6 265 291 105 27 chr1 48026830 48027049 -194637304 - MIR SINE MIR 0 262 24 666 184 0 102 chr1 48030444 48030591 -194633762 + MER2 DNA MER2_type 1 132 -213 802 216 31 0 chr1 48030591 48030753 -194633600 - FAM SINE Alu -18 167 1 1063 139 75 0 chr1 48030754 48030941 -194633412 + MER2 DNA MER2_type 120 320 -25 1622 121 3 136 chr1 48031051 48031397 -194632956 - AluJb SINE Alu 0 302 3 1975 125 50 0 chr1 48031426 48031705 -194632648 - AluSx SINE Alu -15 297 5 2147 137 0 0 chr1 48031734 48032033 -194632320 - AluSx SINE Alu -13 299 1 201 132 53 0 chr1 48032560 48032598 -194631755 - L2 LINE L2 -19 3253 3214 * 226 291 199 14 chr1 48032565 48032706 -194631647 - MIR SINE MIR -19 243 77 1979 160 3 0 chr1 48032875 48033175 -194631178 + AluJb SINE Alu 1 301 -11 452 276 152 5 chr1 48033684 48033901 -194630452 + MIR SINE MIR 2 250 -12 2185 87 24 0 chr1 48034550 48034839 -194629514 + AluY SINE Alu 1 296 -15 453 237 107 29 chr1 48034933 48035127 -194629226 + MIR SINE MIR 39 251 -11 281 296 41 59 chr1 48035310 48035423 -194628930 - Charlie8 DNA MER1_type -2156 261 150 1867 145 41 10 chr1 48035423 48035713 -194628640 - AluJb SINE Alu -13 299 1 281 296 41 59 chr1 48035713 48035768 -194628585 - Charlie8 DNA MER1_type -2267 150 96 2294 94 0 0 chr1 48035804 48036092 -194628261 + AluSx SINE Alu 1 288 -24 377 230 25 113 chr1 48036142 48036279 -194628074 + MARNA DNA Mariner 278 393 -193 2214 110 0 7 chr1 48036279 48036579 -194627774 + AluSc SINE Alu 1 298 -11 377 230 25 113 chr1 48036579 48036645 -194627708 + MARNA DNA Mariner 393 463 -123 212 281 146 0 chr1 48036831 48036927 -194627426 + L3 LINE CR1 1390 1499 -78 247 330 18 9 chr1 48036965 48037074 -194627279 + MIR SINE MIR 20 129 -133 238 281 149 41 chr1 48037114 48037235 -194627118 - L2 LINE L2 -1 3271 3138 1934 91 50 64 chr1 48037520 48037818 -194626535 + AluSx SINE Alu 1 294 -18 30 45 0 0 chr1 48038171 48038215 -194626138 + AT_rich Low_complexity Low_complexity 1 44 0 1670 193 0 31 chr1 48038275 48038597 -194625756 + AluJo SINE Alu 1 312 0 413 246 33 25 chr1 48038937 48039059 -194625294 - MER103 DNA DNA -3 163 41 2284 90 7 13 chr1 48039728 48040038 -194624315 - AluSg SINE Alu -2 308 1 1722 118 0 4 chr1 48040234 48040471 -194623882 + AluSx SINE Alu 42 277 -35 2194 121 3 0 chr1 48040542 48040840 -194623513 - AluSx SINE Alu -13 299 1 362 217 212 33 chr1 48041708 48041892 -194622461 - MIR SINE MIR -12 250 34 232 345 18 18 chr1 48042340 48042450 -194621903 + MIR SINE MIR 16 125 -83 2221 104 0 7 chr1 48042598 48042896 -194621457 + AluSg SINE Alu 1 296 -14 479 202 163 39 chr1 48042913 48043091 -194621262 + MIR SINE MIR 52 251 -11 2165 101 0 4 chr1 48043200 48043477 -194620876 + AluSx SINE Alu 1 276 -36 194 31 0 62 chr1 48043481 48043513 -194620840 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1810 147 49 0 chr1 48043664 48043950 -194620403 - AluSx SINE Alu -12 300 1 590 264 45 0 chr1 48045177 48045332 -194619021 + MIR SINE MIR 12 173 -89 435 232 0 10 chr1 48047879 48047978 -194616375 - MIR SINE MIR -102 160 63 199 283 104 9 chr1 48048341 48048447 -194615906 + MIR SINE MIR 97 212 -50 407 174 0 0 chr1 48048485 48048554 -194615799 + AluJ/FRAM SINE Alu 227 295 -17 939 199 70 73 chr1 48049299 48049341 -194615012 + MLT1I LTR MaLR 109 150 -259 2298 100 0 0 chr1 48049341 48049640 -194614713 + AluSg SINE Alu 1 299 -11 939 199 70 73 chr1 48049640 48049899 -194614454 + MLT1I LTR MaLR 150 409 0 2426 89 0 0 chr1 48050658 48050951 -194613402 + AluSg SINE Alu 1 293 -17 223 274 32 0 chr1 48051032 48051094 -194613259 - L2 LINE L2 -214 3058 2995 2324 101 0 0 chr1 48051295 48051601 -194612752 - AluSq SINE Alu -7 306 1 735 180 118 0 chr1 48051605 48051766 -194612587 - L1MB3 LINE L1 -44 6139 5960 * 1244 117 5 48 chr1 48051759 48051965 -194612388 - L1MB3 LINE L1 -445 5738 5542 2343 78 0 16 chr1 48052244 48052550 -194611803 - AluY SINE Alu -10 301 1 2256 103 0 17 chr1 48052759 48053059 -194611294 - AluSq SINE Alu -18 295 1 1101 275 29 52 chr1 48053135 48053520 -194610833 + LTR16B LTR ERVL 5 380 -84 285 105 63 0 chr1 48053539 48053634 -194610719 + (TA)n Simple_repeat Simple_repeat 2 102 0 279 232 29 0 chr1 48053646 48053715 -194610638 + LTR16B LTR ERVL 392 462 -2 685 269 121 24 chr1 48054431 48054680 -194609673 + MLT1K LTR MaLR 193 465 -123 967 206 80 30 chr1 48055114 48055280 -194609073 + MER3 DNA MER1_type 1 180 -29 1652 187 45 45 chr1 48055280 48055676 -194608677 - MSTD LTR MaLR 0 396 1 967 206 80 30 chr1 48055676 48055708 -194608645 + MER3 DNA MER1_type 180 209 0 2129 106 50 0 chr1 48055896 48056179 -194608174 + AluSg SINE Alu 1 297 -13 186 323 104 10 chr1 48056574 48056670 -194607683 + L2 LINE L2 3191 3295 -18 216 0 0 0 chr1 48056692 48056716 -194607637 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2081 145 0 0 chr1 48056787 48057091 -194607262 + AluSq SINE Alu 1 304 -9 425 255 36 99 chr1 48057284 48057476 -194606877 - MIR SINE MIR -61 201 22 223 279 153 58 chr1 48057817 48058007 -194606346 - L2 LINE L2 -1655 1659 1452 413 219 75 113 chr1 48058070 48058290 -194606063 - MER112 DNA MER1_type 0 256 46 2190 137 0 0 chr1 48058290 48058590 -194605763 + AluSx SINE Alu 2 301 -11 413 219 75 113 chr1 48058590 48058634 -194605719 - MER112 DNA MER1_type -210 46 2 817 129 0 15 chr1 48058720 48058907 -194605446 - FLAM_C SINE Alu 0 186 2 340 252 27 18 chr1 48059166 48059277 -194605076 - MLT1K LTR MaLR -317 271 160 387 241 126 72 chr1 48059483 48059690 -194604663 + LTR33A LTR ERVL 1 218 -305 358 294 93 5 chr1 48059878 48060082 -194604271 + LTR33A LTR ERVL 302 523 0 2272 120 0 0 chr1 48060494 48060795 -194603558 - AluSx SINE Alu -11 301 1 2511 73 0 0 chr1 48061202 48061504 -194602849 - AluY SINE Alu -9 302 1 235 246 0 0 chr1 48061528 48061585 -194602768 + MIR SINE MIR 54 110 -98 2265 99 3 20 chr1 48061617 48061919 -194602434 + AluSx SINE Alu 1 297 -15 217 198 302 12 chr1 48062632 48062718 -194601635 - MIR3 SINE MIR -24 184 74 1845 166 7 14 chr1 48062984 48063142 -194601211 - AluJb SINE Alu -19 293 136 2418 99 0 0 chr1 48063142 48063445 -194600908 - AluSq SINE Alu -10 303 1 1845 166 7 14 chr1 48063445 48063581 -194600772 - AluJb SINE Alu -176 136 1 1518 189 6 47 chr1 48063623 48063940 -194600413 - AluJb SINE Alu -6 306 3 1622 160 63 104 chr1 48064012 48064425 -194599928 - MSTD LTR MaLR 0 396 1 348 240 263 22 chr1 48064962 48065141 -194599212 - MIR SINE MIR -32 230 9 250 184 66 13 chr1 48065391 48065467 -194598886 + MER96 DNA MER1_type? 96 175 0 198 361 0 14 chr1 48065644 48065716 -194598637 + L2 LINE L2 2994 3064 -208 1924 135 3 43 chr1 48065732 48066036 -194598317 - AluSx SINE Alu -20 292 1 864 214 19 0 chr1 48066036 48066195 -194598158 - FRAM SINE Alu -9 167 6 216 286 91 0 chr1 48066210 48066287 -194598066 + L2 LINE L2 3187 3270 -2 192 228 0 168 chr1 48066373 48066423 -194597930 - MIR3 SINE MIR -6 202 176 2629 53 0 0 chr1 48066423 48066726 -194597627 + AluY SINE Alu 1 303 -8 192 228 0 168 chr1 48066726 48066776 -194597577 - MIR3 SINE MIR -32 176 119 2939 98 9 30 chr1 48066795 48066863 -194597490 - MSTA LTR MaLR 0 428 360 2178 113 23 19 chr1 48066863 48067172 -194597181 + AluSx SINE Alu 1 310 -2 2939 98 9 30 chr1 48067172 48067540 -194596813 - MSTA LTR MaLR -68 360 1 305 306 157 28 chr1 48067554 48068014 -194596339 + L2 LINE L2 2239 2757 -557 22 0 0 0 chr1 48068015 48068037 -194596316 + AT_rich Low_complexity Low_complexity 1 22 0 1903 116 52 0 chr1 48068043 48068311 -194596042 + AluSg SINE Alu 1 282 -28 315 0 0 0 chr1 48068311 48068346 -194596007 + (TA)n Simple_repeat Simple_repeat 2 36 0 407 226 165 0 chr1 48068347 48068480 -194595873 - MIR SINE MIR 0 262 108 254 349 123 10 chr1 48068758 48069050 -194595303 - L2 LINE L2 -562 2752 2428 455 239 54 42 chr1 48069605 48069772 -194594581 + MIR SINE MIR 94 262 0 1566 171 47 24 chr1 48070476 48070649 -194593704 - AluJb SINE Alu -7 305 121 2375 83 0 0 chr1 48070649 48070950 -194593403 - AluSc SINE Alu -8 301 1 1566 171 47 24 chr1 48070950 48071074 -194593279 - AluJb SINE Alu -191 121 1 295 344 62 5 chr1 48071079 48071303 -194593050 - L1M4 LINE L1 -1273 4873 4637 192 271 43 43 chr1 48071694 48071764 -194592589 + MIR SINE MIR 58 127 -81 1958 134 14 0 chr1 48071884 48072175 -194592178 - AluSx SINE Alu -17 295 1 1206 168 33 9 chr1 48072453 48072667 -194591686 - MER20 DNA MER1_type 0 219 1 266 224 82 41 chr1 48072780 48072878 -194591475 + MIR3 SINE MIR 91 192 -16 180 0 0 0 chr1 48072890 48072910 -194591443 + (CAGGG)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr1 48073179 48073207 -194591146 + GC_rich Low_complexity Low_complexity 1 28 0 416 292 124 17 chr1 48074874 48075052 -194589301 + MIR SINE MIR 47 243 -19 203 245 19 0 chr1 48075022 48075075 -194589278 + L2 LINE L2 3217 3270 -2 * 335 323 29 55 chr1 48075966 48076229 -194588124 + MIR SINE MIR 9 256 -6 355 286 99 61 chr1 48076410 48076704 -194587649 - L2 LINE L2 -91 3181 2877 239 300 56 0 chr1 48076736 48076826 -194587527 - L2 LINE L2 -511 2803 2709 377 277 28 21 chr1 48077075 48077216 -194587137 + MIR SINE MIR 13 154 -108 789 167 45 0 chr1 48077376 48077508 -194586845 + MER45A DNA AcHobo 34 171 -7 831 209 143 0 chr1 48077618 48077828 -194586525 - MIR SINE MIR 0 262 23 2043 117 0 47 chr1 48078228 48078545 -194585808 + AluJb SINE Alu 1 302 -10 981 320 128 28 chr1 48078583 48079403 -194584950 + L2 LINE L2 2309 3271 -1 626 265 106 59 chr1 48079415 48079989 -194584364 + L2 LINE L2 2609 3219 -53 299 291 110 71 chr1 48079997 48080378 -194583975 - MLT1K LTR MaLR 0 588 193 341 179 179 0 chr1 48080869 48080975 -194583378 - MIR SINE MIR -2 260 136 834 179 86 0 chr1 48080999 48081150 -194583203 - AluJb SINE Alu -15 297 134 1853 163 0 3 chr1 48081150 48081457 -194582896 - AluJb SINE Alu -6 306 1 271 257 40 0 chr1 48081732 48081806 -194582547 + MIR SINE MIR 77 153 -109 980 223 36 109 chr1 48082019 48082116 -194582237 - MER113 DNA MER1_type? -80 441 338 2357 76 3 0 chr1 48082116 48082419 -194581934 - AluSp SINE Alu -9 304 1 980 223 36 109 chr1 48082419 48082673 -194581680 - MER113 DNA MER1_type? -183 338 67 882 213 0 0 chr1 48082673 48082833 -194581520 - FRAM SINE Alu -6 160 1 980 223 36 109 chr1 48082833 48082885 -194581468 - MER113 DNA MER1_type? -454 67 70 2041 115 13 26 chr1 48082885 48083198 -194581155 - AluSx SINE Alu -3 309 1 980 223 36 109 chr1 48083198 48083241 -194581112 - MER113 DNA MER1_type? -450 71 26 189 200 0 0 chr1 48083299 48083334 -194581019 + MIR3 SINE MIR 149 183 -25 225 282 19 10 chr1 48083994 48084097 -194580256 + (TG)n Simple_repeat Simple_repeat 2 105 0 285 257 13 26 chr1 48084155 48084307 -194580046 + (TG)n Simple_repeat Simple_repeat 1 150 0 316 103 15 15 chr1 48084740 48084808 -194579545 + (GGGGA)n Simple_repeat Simple_repeat 1 68 0 538 256 16 0 chr1 48085022 48085151 -194579202 - MER94 DNA DNA 0 134 4 459 226 263 0 chr1 48086522 48086659 -194577694 + MER5A DNA MER1_type 17 189 0 351 229 164 25 chr1 48087071 48087193 -194577160 - L1ME4a LINE L1 0 6121 5983 507 295 58 73 chr1 48087201 48087365 -194576988 - L2 LINE L2 0 3272 3107 2581 179 26 4 chr1 48087365 48087822 -194576531 - MLT1C LTR MaLR 0 467 1 507 295 58 73 chr1 48087822 48088027 -194576326 - L2 LINE L2 -165 3107 2920 1902 141 10 13 chr1 48088027 48088340 -194576013 - AluJb SINE Alu 0 312 1 507 295 58 73 chr1 48088340 48088551 -194575802 - L2 LINE L2 -352 2920 2707 246 105 0 0 chr1 48089701 48089739 -194574614 + (TG)n Simple_repeat Simple_repeat 1 38 0 470 276 53 24 chr1 48090368 48090538 -194573815 - MIR SINE MIR -86 176 2 223 287 43 64 chr1 48090599 48090693 -194573660 - MIR SINE MIR -112 150 59 260 229 33 0 chr1 48090919 48090980 -194573373 - MIR SINE MIR -121 141 79 363 331 16 16 chr1 48091315 48091442 -194572911 + MIR3 SINE MIR 33 159 -49 446 286 102 0 chr1 48091444 48091591 -194572762 + MER117 DNA MER1_type 2 163 -34 2378 78 0 0 chr1 48091742 48092038 -194572315 + AluSg SINE Alu 1 296 -14 331 257 14 91 chr1 48092739 48092863 -194571490 - MIR3 SINE MIR -3 205 87 451 309 46 0 chr1 48093471 48093623 -194570730 + MIR SINE MIR 34 192 -70 404 294 86 45 chr1 48094313 48094534 -194569819 + L2 LINE L2 3077 3306 -7 432 225 49 18 chr1 48094622 48094766 -194569587 - MLT1L LTR MaLR -4 611 328 180 152 0 0 chr1 48094820 48094853 -194569500 + GA-rich Low_complexity Low_complexity 1 33 0 283 297 209 0 chr1 48094913 48095061 -194569292 - MLT1L LTR MaLR -431 184 6 597 232 166 82 chr1 48095061 48095142 -194569211 + L1ME4a LINE L1 5612 5685 -436 2112 126 0 7 chr1 48095142 48095452 -194568901 + AluSx SINE Alu 1 308 -4 597 232 166 82 chr1 48095452 48095488 -194568865 + L1ME4a LINE L1 5685 5717 -404 1966 125 26 10 chr1 48095488 48095816 -194568537 + AluSx SINE Alu 1 312 0 597 232 166 82 chr1 48095816 48095950 -194568403 + L1ME4a LINE L1 5717 5838 -283 2347 77 0 0 chr1 48095950 48096247 -194568106 - AluSx SINE Alu -15 297 1 597 232 166 82 chr1 48096247 48096420 -194567933 + L1ME4a LINE L1 5838 6074 -47 496 326 63 25 chr1 48096501 48096740 -194567613 - MIR SINE MIR 0 262 15 326 190 13 38 chr1 48096850 48096929 -194567424 - MIR SINE MIR -87 121 45 536 326 149 14 chr1 48097313 48097534 -194566819 - MIR SINE MIR -11 251 1 829 145 8 8 chr1 48097650 48097781 -194566572 + FLAM_C SINE Alu 2 132 -1 258 350 21 0 chr1 48099093 48099190 -194565163 - MIR3 SINE MIR 0 208 110 * 722 265 43 39 chr1 48099176 48099432 -194564921 + MIR SINE MIR 5 262 0 258 307 20 0 chr1 48099864 48099965 -194564388 + L2 LINE L2 2571 2673 -641 456 206 103 16 chr1 48100010 48100136 -194564217 + MIR3 SINE MIR 56 192 -16 242 226 316 65 chr1 48100684 48100839 -194563514 + MIR3 SINE MIR 15 208 0 192 311 9 94 chr1 48103378 48103433 -194560920 + L3b LINE CR1 1485 1528 -55 610 219 150 52 chr1 48103433 48103666 -194560687 - MER112 DNA MER1_type 0 256 1 192 311 9 94 chr1 48103666 48103716 -194560637 + L3b LINE CR1 1528 1581 -2 2157 96 27 0 chr1 48103953 48104254 -194560099 - AluSp SINE Alu -4 309 1 616 304 11 31 chr1 48104263 48104454 -194559899 - MIR SINE MIR -71 191 5 458 291 42 18 chr1 48105017 48105182 -194559171 + MIR SINE MIR 94 262 0 182 333 81 24 chr1 48105228 48105351 -194559002 - L3 LINE CR1 -544 1033 904 378 235 0 0 chr1 48105955 48106036 -194558317 + MIR SINE MIR 74 154 -108 519 143 0 0 chr1 48106217 48106294 -194558059 - MER2 DNA MER2_type -1 344 268 436 188 207 24 chr1 48106407 48106457 -194557896 - Tigger3(Golem) DNA MER2_type -55 2973 2933 435 52 0 0 chr1 48106457 48106515 -194557838 + (TA)n Simple_repeat Simple_repeat 2 59 0 436 188 207 24 chr1 48106515 48106699 -194557654 - Tigger3(Golem) DNA MER2_type -95 2933 7 737 88 0 219 chr1 48106705 48106738 -194557615 - MER2 DNA MER2_type -193 152 113 841 149 0 22 chr1 48106738 48106872 -194557481 + FLAM_A SINE Alu 1 131 -2 737 88 0 219 chr1 48106872 48106916 -194557437 - MER2 DNA MER2_type -232 113 61 1851 147 23 16 chr1 48106916 48107223 -194557130 - AluSg SINE Alu -1 309 1 1673 114 8 27 chr1 48107227 48107489 -194556864 - AluSx SINE Alu -14 298 42 737 88 0 219 chr1 48107489 48107597 -194556756 - MER2 DNA MER2_type -287 58 3 2084 118 16 0 chr1 48108821 48109126 -194555227 - AluY SINE Alu -1 310 1 442 259 121 17 chr1 48110177 48110351 -194554002 - MIR SINE MIR -12 250 59 370 367 57 0 chr1 48110385 48110543 -194553810 - MIR SINE MIR -8 254 88 224 313 38 12 chr1 48110619 48110699 -194553654 - MIR SINE MIR -80 182 101 213 315 48 11 chr1 48110692 48110858 -194553495 + MIR SINE MIR 5 261 -1 * 1696 177 3 13 chr1 48111016 48111326 -194553027 + AluJo SINE Alu 1 307 -5 2384 63 0 0 chr1 48111393 48111680 -194552673 + AluY SINE Alu 1 287 -24 276 324 45 9 chr1 48111697 48111808 -194552545 - MIR SINE MIR -76 132 18 605 276 51 32 chr1 48111836 48112053 -194552300 + MIR SINE MIR 29 249 -13 264 122 0 0 chr1 48112559 48112600 -194551753 + (TG)n Simple_repeat Simple_repeat 1 41 0 460 240 120 33 chr1 48117177 48117360 -194546993 + MIR3 SINE MIR 8 206 -2 1647 176 0 0 chr1 48119380 48119652 -194544701 + AluJo SINE Alu 1 272 -40 300 341 57 0 chr1 48119827 48120038 -194544315 + L1M4 LINE L1 4259 4481 -1665 * 2982 138 35 2 chr1 48120028 48120051 -194544302 + L1MB8 LINE L1 5471 5492 -686 2220 108 0 0 chr1 48120051 48120358 -194543995 + AluY SINE Alu 1 307 -4 2982 138 35 2 chr1 48120358 48120841 -194543512 + L1MB8 LINE L1 5492 5991 -187 975 237 126 38 chr1 48120844 48121351 -194543002 + L1ME LINE L1 1667 2218 -4178 * 1288 218 96 35 chr1 48121341 48121393 -194542960 + L1ME LINE L1 3946 3993 -2242 2069 74 99 0 chr1 48121393 48121676 -194542677 + AluY SINE Alu 1 311 0 1288 218 96 35 chr1 48121676 48122609 -194541744 + L1ME LINE L1 3993 4867 -1368 2535 87 0 0 chr1 48122609 48122921 -194541432 - AluSx SINE Alu 0 312 1 1288 218 96 35 chr1 48122921 48123600 -194540753 + L1ME LINE L1 4867 5809 -426 317 125 0 0 chr1 48123575 48123631 -194540722 + L1ME1 LINE L1 5326 5381 -979 * 236 182 0 0 chr1 48123630 48123674 -194540679 + L1ME1 LINE L1 5777 5820 -411 * 368 117 78 0 chr1 48123678 48123755 -194540598 - LTR41 LTR ERVL -2 771 689 2115 192 29 67 chr1 48123755 48124114 -194540239 + L1MA9 LINE L1 4930 5301 -1011 2351 92 7 0 chr1 48124114 48124406 -194539947 + AluSx SINE Alu 1 294 -18 2115 192 29 67 chr1 48124406 48124725 -194539628 + L1MA9 LINE L1 5301 5630 -682 2529 54 0 7 chr1 48124725 48125050 -194539303 + AluY SINE Alu 1 311 0 2115 192 29 67 chr1 48125050 48125793 -194538560 + L1MA9 LINE L1 5630 6282 -30 250 301 124 13 chr1 48125794 48125947 -194538406 - LTR41 LTR ERVL -58 715 546 583 253 56 6 chr1 48126412 48126590 -194537763 - LTR41 LTR ERVL -586 187 1 294 195 35 23 chr1 48126590 48126677 -194537676 + L1ME1 LINE L1 5748 5835 -329 1222 199 81 29 chr1 48126680 48126788 -194537565 - MER2 DNA MER2_type 0 345 244 2069 108 41 0 chr1 48126788 48127083 -194537270 + AluSx SINE Alu 6 312 0 1222 199 81 29 chr1 48127083 48127281 -194537072 - MER2 DNA MER2_type -101 244 23 1120 229 72 22 chr1 48127286 48127615 -194536738 + L1ME1 LINE L1 5831 6333 -1 783 188 0 8 chr1 48127627 48127760 -194536593 + AluJo SINE Alu 3 134 -178 2473 116 111 5 chr1 48127764 48128169 -194536184 + MER83 LTR ERV1 1 448 0 2200 174 139 116 chr1 48128400 48129248 -194535105 - LTR28 LTR ERV1 -1 1019 1 271 255 105 52 chr1 48129330 48129483 -194534870 + L1M1 LINE L1 5621 5781 -523 2247 108 0 0 chr1 48130122 48130417 -194533936 + AluY SINE Alu 1 295 -16 2088 202 26 19 chr1 48130427 48130842 -194533511 + LOR1b LTR ERV1 44 461 0 266 305 8 30 chr1 48131372 48131503 -194532850 + G-rich Low_complexity Low_complexity 4 131 0 207 279 0 16 chr1 48131888 48131949 -194532404 - MIR3 SINE MIR -25 183 124 1093 173 0 0 chr1 48131953 48132121 -194532232 + 7SLRNA srpRNA srpRNA 1 168 -152 336 24 0 0 chr1 48132182 48132223 -194532130 + (TG)n Simple_repeat Simple_repeat 2 42 0 1987 128 21 7 chr1 48132223 48132505 -194531848 - AluSx SINE Alu -26 286 1 652 154 94 26 chr1 48132601 48132739 -194531614 - FLAM_C SINE Alu 0 143 6 2044 138 3 0 chr1 48133110 48133400 -194530953 - AluJb SINE Alu -21 291 1 2412 99 0 0 chr1 48133489 48133801 -194530552 - AluSx SINE Alu 0 312 1 294 104 21 0 chr1 48133822 48133870 -194530483 - MLT2D LTR ERVL 0 464 416 1578 167 17 69 chr1 48133944 48134304 -194530049 - MLT2D LTR ERVL -71 343 3 2351 84 37 0 chr1 48134305 48134603 -194529750 + AluY SINE Alu 1 309 -2 306 278 103 51 chr1 48134736 48135009 -194529344 - L1M4 LINE L1 -753 5393 5107 738 291 51 0 chr1 48135100 48135334 -194529019 + MIR SINE MIR 11 256 -6 1581 155 49 4 chr1 48135427 48135692 -194528661 + AluJo SINE Alu 12 288 -24 2217 113 0 0 chr1 48135733 48136025 -194528328 - AluSg SINE Alu -18 292 1 369 227 84 42 chr1 48136027 48136146 -194528207 - L2 LINE L2 -8 3305 3182 873 185 112 5 chr1 48136153 48136358 -194527995 - MIR SINE MIR -11 251 25 192 209 0 0 chr1 48136516 48136559 -194527794 - L2 LINE L2 -54 3218 3176 185 303 8 76 chr1 48136658 48136790 -194527563 - L2 LINE L2 -236 3036 2914 2027 119 60 0 chr1 48136814 48137099 -194527254 + AluSx SINE Alu 1 302 -10 199 330 0 21 chr1 48137208 48137305 -194527048 - L2 LINE L2 -568 2746 2652 317 98 0 0 chr1 48137314 48137355 -194526998 - MSTA LTR MaLR 0 428 388 2219 88 0 7 chr1 48137355 48137677 -194526676 + AluSc SINE Alu 1 320 0 1226 129 0 0 chr1 48137677 48137847 -194526506 + AluSg/x SINE Alu 133 302 -10 385 231 9 9 chr1 48137891 48137999 -194526354 - L2 LINE L2 -1212 2102 1995 4843 146 30 26 chr1 48138000 48139084 -194525269 + L1MB3 LINE L1 4804 5908 -275 2066 106 0 76 chr1 48139084 48139414 -194524939 + AluSq SINE Alu 1 305 -8 4843 146 30 26 chr1 48139414 48139534 -194524819 + L1MB3 LINE L1 5908 6026 -157 1865 119 11 83 chr1 48139535 48139689 -194524664 - MER44D DNA MER2_type -1883 608 444 7018 74 0 10 chr1 48139689 48140979 -194523374 + L1PA11 LINE L1 4892 6173 -1 1865 119 11 83 chr1 48140979 48141184 -194523169 - MER44D DNA MER2_type -2047 444 5 408 225 108 0 chr1 48141184 48141295 -194523058 + L1MB3 LINE L1 6024 6146 -37 1764 132 4 22 chr1 48141297 48141472 -194522881 - AluJb SINE Alu -6 306 136 2090 148 0 7 chr1 48141472 48141776 -194522577 - AluSx SINE Alu -10 302 1 1764 132 4 22 chr1 48141776 48141873 -194522480 - AluJb SINE Alu -176 136 39 506 181 0 0 chr1 48141873 48141956 -194522397 - AluJ/FLAM SINE Alu -224 88 6 1513 183 3 26 chr1 48142020 48142326 -194522027 + AluJo SINE Alu 5 303 -9 2184 125 24 0 chr1 48142615 48142944 -194521409 - MER1B DNA MER1_type 0 337 1 683 193 0 50 chr1 48143274 48143414 -194520939 + FLAM_A SINE Alu 1 133 0 201 179 75 45 chr1 48143825 48143892 -194520461 - L2 LINE L2 -97 3216 3148 728 191 27 7 chr1 48143932 48144079 -194520274 - FRAM SINE Alu -17 159 10 1196 208 97 50 chr1 48145571 48145703 -194518650 - MER66B LTR ERV1 -3 483 359 1858 203 46 102 chr1 48145703 48146290 -194518063 - MLT2B3 LTR ERVL 0 554 1 1196 208 97 50 chr1 48146290 48146584 -194517769 - MER66B LTR ERV1 -127 359 97 213 255 0 0 chr1 48246619 48246670 -194417683 - MIR SINE MIR -108 154 104 21 0 0 0 chr1 48246829 48246850 -194417503 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 48247081 48247110 -194417243 + AT_rich Low_complexity Low_complexity 1 29 0 341 318 123 36 chr1 48247673 48248063 -194416290 + MLT1J1 LTR MaLR 15 438 -8 1351 216 96 108 chr1 48250697 48251645 -194412708 + LTR1B LTR ERV1 1 1019 -1 1078 269 147 40 chr1 48252848 48253899 -194410454 + Charlie7 DNA MER1_type 1144 2306 -306 24 0 0 0 chr1 48253920 48253944 -194410409 + AT_rich Low_complexity Low_complexity 1 24 0 857 222 21 0 chr1 48254767 48254956 -194409397 + ERVL LTR ERVL 5201 5393 -371 1611 282 34 30 chr1 48255057 48255488 -194408865 - L1MEc LINE L1 -5515 881 445 1889 151 13 0 chr1 48255488 48255786 -194408567 - AluSx SINE Alu -7 305 4 1611 282 34 30 chr1 48255786 48255993 -194408360 - L1MEc LINE L1 -5951 445 240 1657 224 25 43 chr1 48255995 48256433 -194407920 + MLT2B3 LTR ERVL 1 430 -124 1106 287 55 33 chr1 48256464 48257667 -194406686 - L1MEc LINE L1 -3400 2815 1619 1388 143 74 0 chr1 48257667 48257898 -194406455 + Tigger3b DNA MER2_type 1 248 -983 1571 225 40 30 chr1 48257985 48258390 -194405963 + LTR2 LTR ERV1 41 449 0 * 4751 135 39 16 chr1 48258390 48259332 -194405021 + Tigger3b DNA MER2_type 249 1212 -19 423 287 19 19 chr1 48259495 48259603 -194404750 + L2 LINE L2 3138 3245 -27 252 224 51 31 chr1 48259814 48259912 -194404441 + Charlie7 DNA MER1_type 2513 2612 0 180 0 0 0 chr1 48260183 48260203 -194404150 + (GA)n Simple_repeat Simple_repeat 1 20 0 328 305 113 18 chr1 48260372 48260539 -194403814 + MIR SINE MIR 10 188 -63 471 229 64 25 chr1 48261943 48262100 -194402253 + Charlie8 DNA MER1_type 31 193 -2224 1015 143 0 0 chr1 48262145 48262285 -194402068 + AluSg/x SINE Alu 145 284 -28 331 130 19 0 chr1 48262388 48262442 -194401911 + Charlie8 DNA MER1_type 1360 1414 -1003 1845 29 4 0 chr1 48262624 48262868 -194401485 - L1HS LINE L1 -796 5350 5106 * 4137 10 2 0 chr1 48262867 48263358 -194400995 + L1HS LINE L1 5363 5854 -301 232 368 2 0 chr1 48263459 48263553 -194400800 + MIR SINE MIR 32 127 -81 461 133 61 0 chr1 48263553 48263561 -194400792 + (TA)n Simple_repeat Simple_repeat 1 7 -168 207 69 0 0 chr1 48263561 48263590 -194400763 + (TG)n Simple_repeat Simple_repeat 2 30 0 461 133 61 0 chr1 48263590 48263746 -194400607 + (TA)n Simple_repeat Simple_repeat 7 175 0 39 0 0 0 chr1 48263754 48263793 -194400560 + AT_rich Low_complexity Low_complexity 1 39 0 1054 143 0 0 chr1 48263796 48263943 -194400410 - AluSg/x SINE Alu -25 287 141 268 132 0 5 chr1 48263943 48263996 -194400357 - AluSp SINE Alu -133 170 123 930 263 21 8 chr1 48263998 48264241 -194400112 - MIR SINE MIR -9 253 8 21 0 0 0 chr1 48265789 48265810 -194398543 + AT_rich Low_complexity Low_complexity 1 21 0 647 231 19 13 chr1 48265936 48266092 -194398261 + MIR SINE MIR 13 169 -93 2226 112 0 13 chr1 48266423 48266736 -194397617 - AluSc SINE Alu 0 309 1 1808 178 43 51 chr1 48266854 48267165 -194397188 - MER31A LTR ERV1 -1 484 177 1536 177 113 0 chr1 48267165 48267493 -194396860 + MLT1A1 LTR MaLR 1 365 0 1808 178 43 51 chr1 48267493 48267669 -194396684 - MER31A LTR ERV1 -308 177 1 405 39 0 0 chr1 48267791 48267842 -194396511 + (GA)n Simple_repeat Simple_repeat 1 51 0 312 274 24 126 chr1 48268770 48269025 -194395328 - L1MEd LINE L1 -3671 2458 2230 21 36 0 0 chr1 48269275 48269303 -194395050 + AT_rich Low_complexity Low_complexity 1 28 0 4265 149 18 7 chr1 48269522 48270262 -194394091 - L1MC1 LINE L1 -1 6332 5585 596 283 144 66 chr1 48270403 48270941 -194393412 - L1MEd LINE L1 -4823 1306 741 248 293 131 59 chr1 48271858 48272080 -194392273 + MIR SINE MIR 3 240 -22 200 176 0 0 chr1 48272898 48272932 -194391421 + GA-rich Low_complexity Low_complexity 3 36 0 780 231 62 37 chr1 48273488 48273731 -194390622 - MIR SINE MIR -1 261 13 786 289 25 8 chr1 48274318 48274553 -194389800 - MIR SINE MIR -12 250 12 24 32 0 0 chr1 48275418 48275449 -194388904 + AT_rich Low_complexity Low_complexity 1 31 0 1738 174 210 20 chr1 48275708 48276208 -194388145 + LTR49 LTR ERV1 1 595 0 372 190 0 0 chr1 48277062 48277120 -194387233 - MER2 DNA MER2_type -2 343 286 24 0 0 0 chr1 48277329 48277353 -194387000 + AT_rich Low_complexity Low_complexity 1 24 0 630 182 33 8 chr1 48278279 48278400 -194385953 - MER5A DNA MER1_type 0 189 66 2038 141 7 0 chr1 48278400 48278704 -194385649 - AluSx SINE Alu -6 306 1 303 308 72 67 chr1 48278708 48278903 -194385450 + L2 LINE L2 3116 3311 -2 195 100 0 0 chr1 48280865 48280895 -194383458 + (CA)n Simple_repeat Simple_repeat 1 30 0 254 203 0 17 chr1 48281102 48281161 -194383192 - MSTA LTR MaLR 0 428 371 495 122 74 17 chr1 48281263 48281562 -194382791 + (CA)n Simple_repeat Simple_repeat 1 316 0 196 132 40 26 chr1 48281576 48281652 -194382701 + (CA)n Simple_repeat Simple_repeat 1 77 0 1134 219 12 12 chr1 48282422 48282673 -194381680 + MIR SINE MIR 6 256 -6 316 321 147 32 chr1 48282652 48282870 -194381483 - L2 LINE L2 -27 3245 3003 * 438 129 106 0 chr1 48282904 48282989 -194381364 - L1PA16 LINE L1 -7 6159 6066 518 205 33 33 chr1 48283027 48283149 -194381204 - MIR SINE MIR -119 143 22 1796 168 7 10 chr1 48285267 48285576 -194378777 + AluJb SINE Alu 1 308 -4 575 145 8 69 chr1 48285792 48285923 -194378430 + MER20 DNA MER1_type 1 123 -96 243 327 69 45 chr1 48286359 48286561 -194377792 + MIR SINE MIR 8 214 -48 269 316 129 36 chr1 48286691 48286830 -194377523 + L2 LINE L2 3161 3312 -1 330 316 18 9 chr1 48287174 48287288 -194377065 - MIR SINE MIR -130 132 18 1751 208 98 21 chr1 48287506 48287973 -194376380 - MLT1D LTR MaLR -2 503 1 236 320 26 0 chr1 48289148 48289226 -194375127 + MIR SINE MIR 83 162 -100 329 301 76 47 chr1 48289352 48289628 -194374725 + L1ME4a LINE L1 5599 5882 -239 2326 99 3 3 chr1 48289681 48289993 -194374360 + AluSx SINE Alu 1 312 0 313 289 104 35 chr1 48290393 48290566 -194373787 - MIR SINE MIR -29 233 49 429 251 96 107 chr1 48290679 48290970 -194373383 - LTR67 LTR ERVL -12 545 258 234 315 81 9 chr1 48291611 48291722 -194372631 - L2 LINE L2 -2 3311 3193 371 297 103 19 chr1 48291959 48292114 -194372239 + MIR SINE MIR 60 227 -35 814 294 57 64 chr1 48295466 48296067 -194368286 - L2 LINE L2 -12 3301 2650 181 292 106 80 chr1 48296217 48296330 -194368023 - L2 LINE L2 -577 2737 2622 290 386 14 0 chr1 48296415 48296555 -194367798 - MLT1J LTR MaLR -110 401 260 851 271 12 39 chr1 48297447 48297629 -194366724 - MIR SINE MIR 0 262 87 1601 147 75 11 chr1 48297629 48297908 -194366445 - AluJo SINE Alu -15 297 1 851 271 12 39 chr1 48297908 48297980 -194366373 - MIR SINE MIR -175 87 15 392 318 66 25 chr1 48298797 48298995 -194365358 - MIR SINE MIR -44 218 13 184 246 35 35 chr1 48300245 48300302 -194364051 + MIR SINE MIR 206 262 0 2028 135 0 10 chr1 48301535 48301824 -194362529 - AluSx SINE Alu -21 291 6 361 353 82 16 chr1 48302171 48302355 -194361998 - MIR3 SINE MIR -6 202 7 796 229 287 20 chr1 48302674 48303133 -194361220 - L2 LINE L2 -1 3312 2708 1338 183 61 72 chr1 48303243 48303620 -194360733 - MLT1A2 LTR MaLR 0 374 2 236 206 15 29 chr1 48303772 48303840 -194360513 - MER5A DNA MER1_type -68 121 55 963 301 130 15 chr1 48304792 48305372 -194358981 + L2 LINE L2 2447 3133 -180 2317 112 3 0 chr1 48305372 48305684 -194358669 - AluSp SINE Alu 0 313 1 963 301 130 15 chr1 48305684 48305870 -194358483 + L2 LINE L2 3133 3296 -17 1090 181 75 31 chr1 48306175 48306467 -194357886 - L1MD1 LINE L1 -2 6240 5936 1109 260 97 40 chr1 48306841 48307414 -194356939 - L1ME2 LINE L1 -182 5982 5443 1961 37 0 12 chr1 48307414 48307658 -194356695 - L1PA5 LINE L1 0 6154 5914 1109 260 97 40 chr1 48307658 48308822 -194355531 - L1ME2 LINE L1 -721 5443 4114 467 195 34 105 chr1 48308853 48309120 -194355233 - L1ME2 LINE L1 -2228 3918 3671 22 0 0 0 chr1 48309297 48309319 -194355034 + AT_rich Low_complexity Low_complexity 1 22 0 910 201 6 0 chr1 48309325 48309484 -194354869 - AluSg/x SINE Alu -29 283 124 227 284 0 0 chr1 48310714 48310781 -194353572 + (TA)n Simple_repeat Simple_repeat 2 68 0 298 281 78 59 chr1 48311074 48311330 -194353023 + Charlie2 DNA MER1_type 83 343 -2439 597 249 92 66 chr1 48311494 48311712 -194352641 - Charlie2a DNA MER1_type -386 2476 2265 1532 185 46 0 chr1 48311712 48311993 -194352360 - AluJo SINE Alu -18 294 1 597 249 92 66 chr1 48311993 48312408 -194351945 - Charlie2a DNA MER1_type -597 2265 1827 362 222 90 21 chr1 48312514 48312658 -194351695 - Charlie2a DNA MER1_type -1288 1574 1421 467 280 114 8 chr1 48312748 48312984 -194351369 - L1ME2 LINE L1 -3131 3015 2755 1476 213 66 17 chr1 48313202 48313550 -194350803 - MLT1A1 LTR MaLR 0 365 1 440 174 0 0 chr1 48314279 48314365 -194349988 + L1MA8 LINE L1 5866 5951 -340 431 278 68 47 chr1 48314662 48314853 -194349500 - MIR SINE MIR -65 197 3 196 358 66 75 chr1 48315072 48315407 -194348946 - L2 LINE L2 -1 3271 2940 574 354 4 34 chr1 48315412 48315675 -194348678 + MIR SINE MIR 8 262 0 640 221 27 0 chr1 48315829 48315978 -194348375 + L1MDa LINE L1 26 178 -6362 2030 189 57 5 chr1 48315982 48316389 -194347964 + MSTA LTR MaLR 1 428 0 7208 221 34 8 chr1 48316389 48317999 -194346354 + MSTA-int LTR MaLR 1 1651 0 1291 232 180 3 chr1 48317999 48318361 -194345992 + MSTA LTR MaLR 1 426 0 311 212 24 24 chr1 48318397 48318482 -194345871 + L1MDa LINE L1 202 286 -6254 4464 231 49 15 chr1 48318506 48319481 -194344872 + L1PA13 LINE L1 53 1060 -5779 6864 242 15 8 chr1 48319590 48321652 -194342701 + L1PA13 LINE L1 2022 4103 -2746 240 169 0 51 chr1 48321682 48321741 -194342612 + L1PA13 LINE L1 4048 4103 -2746 5662 181 17 26 chr1 48321753 48323038 -194341315 + L1P LINE L1 3194 4466 -1680 * 7526 166 8 41 chr1 48323037 48324436 -194339917 - THE1C-int LTR MaLR -224 1356 4 1586 183 78 36 chr1 48324439 48324799 -194339554 - THE1C LTR MaLR 0 375 1 512 254 8 0 chr1 48324801 48324919 -194339434 - MLT1A2 LTR MaLR -252 122 4 6355 247 69 39 chr1 48324953 48325850 -194338503 + L1MDa LINE L1 364 1233 -5307 2440 138 8 13 chr1 48325850 48326227 -194338126 - THE1C LTR MaLR 0 375 1 6355 247 69 39 chr1 48326227 48327259 -194337094 + L1MDa LINE L1 1233 2392 -4148 2940 148 14 18 chr1 48327259 48327764 -194336589 + L1MA8 LINE L1 5784 6286 -5 6355 247 69 39 chr1 48327764 48328412 -194335941 + L1MDa LINE L1 2392 3019 -3521 278 172 17 0 chr1 48328420 48328478 -194335875 + L1MD1 LINE L1 1888 1946 -4594 2096 264 50 21 chr1 48328527 48329470 -194334883 + L1MD1 LINE L1 2992 3961 -2579 1946 182 48 42 chr1 48329502 48330042 -194334311 - MLT2A2 LTR ERVL 0 554 1 4183 266 62 13 chr1 48330042 48332572 -194331781 + L1MD1 LINE L1 3973 6636 0 2190 116 0 26 chr1 48332670 48332981 -194331372 - AluSx SINE Alu -7 305 3 305 328 153 6 chr1 48333681 48333858 -194330495 + MIR SINE MIR 1 203 -59 186 103 0 0 chr1 48334208 48334237 -194330116 + (TG)n Simple_repeat Simple_repeat 2 30 0 212 137 98 20 chr1 48335525 48335576 -194328777 - L2 LINE L2 -4 3309 3255 305 284 64 18 chr1 48335631 48335740 -194328613 + L2 LINE L2 3192 3305 -8 * 306 288 179 14 chr1 48335726 48335938 -194328415 - MIR SINE MIR -10 252 6 416 310 40 23 chr1 48336751 48336925 -194327428 - MIR SINE MIR -65 197 21 247 249 115 96 chr1 48337287 48337496 -194326857 - L2 LINE L2 -3 3310 3098 * 319 280 196 30 chr1 48337488 48337824 -194326529 - L2 LINE L2 -417 2897 2506 570 168 8 64 chr1 48338182 48338307 -194326046 + MER58 DNA MER1_type 3 120 -2300 248 158 0 0 chr1 48338319 48338357 -194325996 + MER58 DNA MER1_type 2383 2420 0 319 336 36 15 chr1 48341757 48341894 -194322459 - MIR3 SINE MIR -9 199 60 417 247 2 2 chr1 48341894 48342008 -194322345 - L1ME2 LINE L1 -6 6160 6046 206 314 0 14 chr1 48343085 48343155 -194321198 + G-rich Low_complexity Low_complexity 3 71 0 * 208 237 0 0 chr1 48343118 48343156 -194321197 + polypurine Low_complexity Low_complexity 3 40 0 221 335 144 23 chr1 48345602 48345775 -194318578 - L3 LINE CR1 -14 1563 1370 326 279 122 29 chr1 48345780 48345952 -194318401 + L1ME LINE L1 5333 5520 -601 274 240 13 40 chr1 48345961 48346036 -194318317 + L1ME LINE L1 5562 5634 -487 256 305 0 0 chr1 48346056 48346115 -194318238 - MIR SINE MIR -188 74 16 292 304 101 29 chr1 48346316 48346454 -194317899 - L2 LINE L2 -3 3310 3163 237 180 80 0 chr1 48346931 48346981 -194317372 + HsTC2 DNA Tc2 772 825 -1073 568 237 78 23 chr1 48347091 48347424 -194316929 - L1MB8 LINE L1 -7 6171 5782 237 238 95 0 chr1 48347615 48347678 -194316675 + L1MC/D LINE L1 5529 5597 -2188 363 23 0 0 chr1 48347979 48348023 -194316330 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 225 347 0 0 chr1 48349015 48349087 -194315266 - MIR SINE MIR -18 244 173 1109 168 1 6 chr1 48349908 48350095 -194314258 - MLT1A2 LTR MaLR 0 626 189 937 152 0 7 chr1 48350191 48350342 -194314011 - L1PA7 LINE L1 -5 6149 6000 302 138 17 0 chr1 48350460 48350518 -194313835 - L1ME3A LINE L1 -220 6019 5961 1150 250 56 70 chr1 48350783 48351559 -194312794 - L1ME3A LINE L1 -313 5926 5169 2472 277 118 26 chr1 48351666 48353220 -194311133 - L1ME3A LINE L1 -2138 4077 2381 546 271 76 65 chr1 48353233 48353665 -194310688 - L1ME3A LINE L1 -4666 1730 1294 256 274 85 24 chr1 48353745 48353909 -194310444 - L1ME3A LINE L1 -5943 262 89 216 0 0 0 chr1 48354450 48354474 -194309879 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9216 214 29 28 chr1 48354852 48358130 -194306223 + L1PA12 LINE L1 191 4263 -3321 517 326 158 32 chr1 48358455 48359462 -194304891 - L2 LINE L2 -342 2972 1839 547 262 47 52 chr1 48359498 48359731 -194304622 + L2 LINE L2 3081 3312 -1 594 302 43 79 chr1 48359967 48360437 -194303916 - LTR16A1 LTR ERVL -3 454 2 183 100 0 0 chr1 48360803 48360833 -194303520 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 233 234 0 0 chr1 48360840 48360887 -194303466 - L2 LINE L2 -11 3261 3215 270 95 0 24 chr1 48361064 48361106 -194303247 + MIR SINE MIR 109 149 -113 11081 173 21 4 chr1 48361206 48363245 -194301108 - L1P LINE L1 -1617 4529 2456 233 206 0 16 chr1 48363245 48363308 -194301045 + (TG)n Simple_repeat Simple_repeat 1 62 0 1604 106 9 4 chr1 48363337 48363563 -194300790 - AluSq SINE Alu -19 294 68 356 252 87 31 chr1 48363755 48363882 -194300471 + MIR SINE MIR 107 240 -22 250 266 16 0 chr1 48364141 48364205 -194300148 + MIR SINE MIR 72 136 -72 302 185 62 37 chr1 48364531 48364612 -194299741 + L2 LINE L2 3011 3093 -179 358 258 165 0 chr1 48364985 48365082 -194299271 - MER3 DNA MER1_type -3 206 94 2069 184 58 22 chr1 48365244 48365690 -194298663 + MLT1C LTR MaLR 6 467 0 201 313 31 0 chr1 48366725 48366789 -194297564 + MIR SINE MIR 73 138 -124 2169 109 3 10 chr1 48366885 48367179 -194297174 + AluSx SINE Alu 1 292 -20 185 167 0 56 chr1 48367200 48367236 -194297117 + MIR SINE MIR 214 247 -15 1803 57 0 26 chr1 48368838 48369066 -194295287 - L1PA4 LINE L1 -5 6150 5929 301 374 17 40 chr1 48369616 48369790 -194294563 - MIR3 SINE MIR -22 186 17 1050 277 83 13 chr1 48370055 48370427 -194293926 + L2 LINE L2 2916 3313 0 465 19 0 0 chr1 48370482 48370536 -194293817 + (CA)n Simple_repeat Simple_repeat 2 55 0 2214 120 10 0 chr1 48370862 48371163 -194293190 + AluSx SINE Alu 1 304 -8 257 382 41 0 chr1 48371799 48371922 -194292431 + L2 LINE L2 3144 3271 -1 222 351 20 34 chr1 48373788 48373936 -194290417 + MIR SINE MIR 47 192 -70 892 224 53 8 chr1 48375277 48375522 -194288831 - L1MC3 LINE L1 -10 7775 7520 423 276 161 16 chr1 48377242 48377434 -194286919 - MIR SINE MIR -41 221 2 184 211 0 0 chr1 48377677 48377715 -194286638 - MIR SINE MIR -62 146 109 886 180 19 0 chr1 48378060 48378221 -194286132 + FRAM SINE Alu 1 164 -2 258 257 43 0 chr1 48378332 48378402 -194285951 + L3 LINE CR1 1043 1115 -462 860 109 0 0 chr1 48378788 48378935 -194285418 - AluSg/x SINE Alu 0 318 172 197 244 268 0 chr1 48378936 48379018 -194285335 - MIR SINE MIR -56 152 49 336 310 103 7 chr1 48380137 48380292 -194284061 - MIR SINE MIR -58 204 35 339 298 192 18 chr1 48380693 48380786 -194283567 - L2 LINE L2 -46 3267 3191 186 43 0 0 chr1 48380786 48380809 -194283544 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 339 298 192 18 chr1 48380809 48380962 -194283391 - L2 LINE L2 -122 3191 3066 2065 149 13 0 chr1 48380962 48381270 -194283083 + AluJo SINE Alu 1 312 0 339 298 192 18 chr1 48381270 48381456 -194282897 - L2 LINE L2 -247 3066 2751 930 135 0 7 chr1 48381524 48381672 -194282681 - AluSg/x SINE Alu 0 312 166 236 250 0 15 chr1 48381845 48381913 -194282440 - MIR SINE MIR -183 79 13 1958 123 30 0 chr1 48382172 48382441 -194281912 + AluSx SINE Alu 1 277 -35 252 0 0 0 chr1 48382447 48382475 -194281878 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 374 340 66 76 chr1 48382608 48382911 -194281442 + L2 LINE L2 2963 3262 -10 258 268 12 12 chr1 48383678 48383760 -194280593 + MIR SINE MIR 20 101 -161 475 246 41 8 chr1 48384127 48384249 -194280104 + L2 LINE L2 3187 3312 -1 735 248 102 58 chr1 48385340 48385791 -194278562 - MLT1H LTR MaLR -4 545 75 1588 209 56 26 chr1 48386309 48386687 -194277666 + MLT1B LTR MaLR 2 390 0 325 281 92 12 chr1 48386714 48386878 -194277475 - MIR SINE MIR -79 183 7 277 258 0 0 chr1 48387504 48387570 -194276783 - MIR SINE MIR -114 148 83 225 0 0 0 chr1 48388118 48388143 -194276210 + (TA)n Simple_repeat Simple_repeat 1 25 0 395 89 0 38 chr1 48388143 48388222 -194276131 + (GA)n Simple_repeat Simple_repeat 1 76 0 907 125 8 0 chr1 48388222 48388350 -194276003 - AluSq SINE Alu -30 283 155 591 249 76 30 chr1 48388355 48388552 -194275801 - LTR7 LTR ERV1 -7 443 238 1145 106 12 12 chr1 48388741 48388902 -194275451 - AluSq SINE Alu -152 161 1 1963 146 0 7 chr1 48388947 48389235 -194275118 - AluJb SINE Alu -24 288 3 345 224 13 13 chr1 48389322 48389398 -194274955 - MER91B DNA MER1_type -114 76 1 2401 85 3 3 chr1 48389737 48390042 -194274311 - AluSq SINE Alu -8 305 1 884 217 22 0 chr1 48390077 48390261 -194274092 - MER5A DNA MER1_type -1 188 1 216 296 51 41 chr1 48390419 48390517 -194273836 - MIR3 SINE MIR -17 191 93 520 300 102 23 chr1 48390958 48391301 -194273052 + L2 LINE L2 2944 3313 0 2386 108 0 0 chr1 48391345 48391652 -194272701 - AluSc SINE Alu 0 309 3 304 258 21 32 chr1 48393563 48393656 -194270697 + MER94 DNA DNA 2 93 -41 367 217 12 24 chr1 48393659 48393742 -194270611 + MER94 DNA DNA 52 133 -1 528 298 38 13 chr1 48393743 48393978 -194270375 + L1M4 LINE L1 2381 2621 -3525 871 176 75 65 chr1 48394004 48394203 -194270150 + MER58A DNA MER1_type 24 224 0 444 243 171 4 chr1 48394375 48394614 -194269739 + L1M4 LINE L1 2784 3062 -3084 336 239 162 17 chr1 48394948 48395065 -194269288 + MIR SINE MIR 22 155 -107 587 143 31 0 chr1 48395668 48395766 -194268587 + MIR SINE MIR 75 175 -87 446 229 37 0 chr1 48396853 48396962 -194267391 - MER5B DNA MER1_type -64 114 2 214 242 40 14 chr1 48396962 48397052 -194267301 - MIR SINE MIR -67 141 46 2015 153 16 0 chr1 48397114 48397421 -194266932 + AluSx SINE Alu 1 312 0 332 200 0 27 chr1 48397785 48397860 -194266493 - Tigger1 DNA MER2_type -2343 75 3 943 292 13 39 chr1 48397929 48398237 -194266116 + MLT1I LTR MaLR 102 401 -8 357 43 0 0 chr1 48400967 48401014 -194263339 + (TATG)n Simple_repeat Simple_repeat 2 48 0 967 217 32 14 chr1 48401180 48401461 -194262892 + L1MB8 LINE L1 5107 5392 -754 1039 234 8 28 chr1 48402567 48402815 -194261538 - MIR SINE MIR 0 262 20 486 275 82 60 chr1 48403159 48403819 -194260534 - L2 LINE L2 -72 3200 2533 205 195 24 0 chr1 48405382 48405423 -194258930 + CT-rich Low_complexity Low_complexity 4 45 0 2626 186 32 49 chr1 48406158 48406606 -194257747 + L1ME2 LINE L1 5579 6016 -148 2809 109 35 9 chr1 48406606 48407029 -194257324 + MER57B LTR ERV1 1 434 0 2626 186 32 49 chr1 48407029 48407167 -194257186 + L1ME2 LINE L1 6016 6155 -9 856 285 25 0 chr1 48408084 48408319 -194256034 - MIR SINE MIR 0 262 22 324 339 31 23 chr1 48408593 48408723 -194255630 - L2 LINE L2 -5 3267 3137 930 127 38 6 chr1 48409362 48409520 -194254833 + L1PA16 LINE L1 5985 6147 -19 1680 243 30 2 chr1 48409759 48410232 -194254121 + L1MC3 LINE L1 4849 5334 -812 3208 228 117 25 chr1 48410237 48411275 -194253078 + L1MC3 LINE L1 5432 6564 -1221 1232 228 93 42 chr1 48411412 48411789 -194252564 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr1 48411930 48411958 -194252395 + AT_rich Low_complexity Low_complexity 1 28 0 182 71 107 18 chr1 48412237 48412293 -194252060 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 233 245 32 53 chr1 48412753 48412847 -194251506 - MLT1J1 LTR MaLR -354 92 1 223 295 158 29 chr1 48412906 48413045 -194251308 - MIR SINE MIR -57 205 49 198 0 0 0 chr1 48413195 48413217 -194251136 + (A)n Simple_repeat Simple_repeat 1 22 0 1039 253 60 42 chr1 48413820 48414183 -194250170 + L1M4b LINE L1 11 504 -6355 * 2590 209 56 20 chr1 48414178 48414818 -194249535 + L1MB8 LINE L1 5511 6173 -5 378 0 0 0 chr1 48415719 48415761 -194248592 + (TA)n Simple_repeat Simple_repeat 1 42 0 30 59 0 0 chr1 48415803 48415854 -194248499 + AT_rich Low_complexity Low_complexity 1 51 0 210 253 0 60 chr1 48416001 48416084 -194248269 + MIR SINE MIR 160 237 -25 296 253 156 53 chr1 48418725 48418950 -194245403 + MARNA DNA Mariner 173 420 -166 201 305 0 0 chr1 48419073 48419132 -194245221 - MIR SINE MIR -62 146 88 43 20 0 0 chr1 48419969 48420019 -194244334 + AT_rich Low_complexity Low_complexity 1 50 0 187 329 70 28 chr1 48420581 48420724 -194243629 + L2 LINE L2 3165 3313 0 1076 271 170 44 chr1 48420823 48421229 -194243124 + LTR16A LTR ERVL 1 457 0 515 279 84 27 chr1 48421308 48421606 -194242747 + L2 LINE L2 2999 3313 0 630 333 5 0 chr1 48421628 48421814 -194242539 + MIR3 SINE MIR 16 202 -6 498 260 48 39 chr1 48422220 48422428 -194241925 - MIR SINE MIR -52 210 1 371 242 20 0 chr1 48422447 48422546 -194241807 - MER5A DNA MER1_type -80 109 9 1835 148 0 11 chr1 48422661 48422944 -194241409 + AluJo SINE Alu 16 295 -17 218 260 0 20 chr1 48423052 48423102 -194241251 + L2 LINE L2 3208 3256 -16 * 278 273 235 11 chr1 48423086 48423273 -194241080 - MIR SINE MIR -11 251 23 205 264 0 0 chr1 48423696 48423749 -194240604 - L3 LINE CR1 -18 1559 1507 1845 79 91 0 chr1 48624247 48624512 -194039841 - AluY SINE Alu -22 289 1 1888 129 89 4 chr1 48624512 48624792 -194039561 - AluSc SINE Alu -5 304 1 231 163 0 0 chr1 48624792 48624835 -194039518 - MER53 DNA DNA -133 56 14 236 136 136 71 chr1 48625923 48626063 -194038290 + AluSg/x SINE Alu 143 291 -9 337 265 93 47 chr1 48626260 48626465 -194037888 - L1MC5 LINE L1 -32 7929 7706 2296 86 20 10 chr1 48626465 48626768 -194037585 + AluSp SINE Alu 1 306 -7 337 265 93 47 chr1 48626768 48626841 -194037512 - L1MC5 LINE L1 -255 7706 7638 187 59 176 0 chr1 48627007 48627041 -194037312 - L2 LINE L2 -4 3309 3270 912 255 132 26 chr1 48627059 48627400 -194036953 - L2 LINE L2 -2662 652 276 208 241 19 19 chr1 48627576 48627630 -194036723 + CT-rich Low_complexity Low_complexity 1 54 0 191 235 153 47 chr1 48628879 48628964 -194035389 - L2 LINE L2 -1045 2269 2176 1767 83 5 0 chr1 48629219 48629437 -194034916 + AluSg/x SINE Alu 81 299 -11 645 281 55 42 chr1 48630986 48631203 -194033150 + MIR SINE MIR 21 240 -22 27 0 0 0 chr1 48631422 48631449 -194032904 + AT_rich Low_complexity Low_complexity 1 27 0 2414 97 3 0 chr1 48631587 48631896 -194032457 + AluSp SINE Alu 1 310 -3 240 227 247 21 chr1 48632031 48632128 -194032225 + L2 LINE L2 2934 3052 -220 1897 159 0 24 chr1 48632466 48632762 -194031591 + AluJb SINE Alu 1 289 -23 278 284 239 0 chr1 48632886 48632995 -194031358 - L2 LINE L2 -1 3271 3137 2306 114 3 0 chr1 48633835 48634141 -194030212 + AluSq SINE Alu 1 307 -6 327 331 23 8 chr1 48634183 48634316 -194030037 - L2 LINE L2 -173 3099 2965 224 333 94 22 chr1 48634387 48634525 -194029828 - L2 LINE L2 -510 2804 2657 317 360 17 12 chr1 48634617 48634789 -194029564 - L2 LINE L2 -836 2478 2306 2560 50 0 7 chr1 48634859 48635156 -194029197 - AluY SINE Alu -16 295 1 249 330 105 77 chr1 48635332 48635541 -194028812 - L2 LINE L2 -20 3252 3038 188 309 101 71 chr1 48636030 48636139 -194028214 - L2 LINE L2 -154 3118 3001 1877 153 7 23 chr1 48636139 48636440 -194027913 + AluJb SINE Alu 6 301 -11 188 309 101 71 chr1 48636440 48636498 -194027855 - L2 LINE L2 -271 3001 2946 205 368 0 23 chr1 48636600 48636687 -194027666 - L2 LINE L2 -482 2832 2748 2289 99 0 0 chr1 48636687 48636979 -194027374 + AluSg SINE Alu 1 292 -18 1197 110 0 0 chr1 48636980 48637144 -194027209 - THE1B LTR MaLR -200 164 1 534 265 88 6 chr1 48637227 48637397 -194026956 - L2 LINE L2 -923 2391 2208 300 212 0 0 chr1 48637564 48637630 -194026723 + Charlie8 DNA MER1_type 2341 2406 -11 283 285 88 40 chr1 48637775 48638049 -194026304 + L1ME LINE L1 5563 5849 -272 267 277 101 8 chr1 48638163 48638282 -194026071 + L2 LINE L2 1891 2020 -1294 666 307 40 9 chr1 48638981 48639209 -194025144 - L3 LINE CR1 -124 1453 1219 213 338 50 62 chr1 48639545 48639705 -194024648 - L3 LINE CR1 -808 769 612 415 298 69 21 chr1 48639894 48640082 -194024271 + MIR SINE MIR 20 216 -46 325 258 0 45 chr1 48641242 48641374 -194022979 + G-rich Low_complexity Low_complexity 6 131 0 436 219 54 3 chr1 48641375 48641751 -194022602 + (GGATG)n Simple_repeat Simple_repeat 1 394 0 246 282 28 21 chr1 48641712 48641854 -194022499 + G-rich Low_complexity Low_complexity 6 148 0 * 673 215 0 0 chr1 48642629 48642759 -194021594 + FLAM_A SINE Alu 4 133 0 259 96 39 0 chr1 48642984 48643036 -194021317 + (TA)n Simple_repeat Simple_repeat 2 55 0 219 133 0 0 chr1 48643456 48643501 -194020852 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1205 213 31 19 chr1 48643638 48643896 -194020457 - MLT1A1 LTR MaLR -104 261 1 331 307 53 9 chr1 48644052 48644166 -194020187 + MIR SINE MIR 88 206 -56 307 309 125 0 chr1 48644340 48644476 -194019877 - L2 LINE L2 -609 2705 2553 248 294 39 26 chr1 48647960 48648113 -194016240 + CT-rich Low_complexity Low_complexity 1 155 0 2077 132 3 14 chr1 48648917 48649213 -194015140 + AluJo SINE Alu 4 296 -16 1446 161 43 12 chr1 48649486 48649741 -194014612 + MER70A LTR ERVL 210 472 0 367 183 14 14 chr1 48649744 48649815 -194014538 - MER76 LTR ERV -506 182 112 2268 105 13 0 chr1 48650399 48650704 -194013649 + AluSp SINE Alu 3 311 -2 322 335 36 16 chr1 48650710 48650904 -194013449 + L1M4 LINE L1 1466 1663 -4879 254 167 233 0 chr1 48651090 48651150 -194013203 - AluJb SINE Alu -172 130 57 221 171 0 0 chr1 48651155 48651196 -194013157 + T-rich Low_complexity Low_complexity 1 41 0 353 235 296 5 chr1 48651328 48651524 -194012829 + L2 LINE L2 2439 2691 -623 216 246 29 29 chr1 48651582 48651651 -194012702 - MIR SINE MIR -141 121 53 2099 117 13 0 chr1 48651672 48651970 -194012383 - AluSx SINE Alu -10 302 1 243 263 88 0 chr1 48651997 48652054 -194012299 + L2 LINE L2 3184 3245 -68 187 256 82 123 chr1 48652916 48653111 -194011242 + L2 LINE L2 2921 3107 -165 231 194 204 21 chr1 48653239 48653332 -194011021 + MIR SINE MIR 20 129 -133 2248 104 7 3 chr1 48653905 48654194 -194010159 - AluSg SINE Alu -20 290 1 2110 150 0 0 chr1 48654224 48654517 -194009836 + AluSx SINE Alu 1 293 -19 336 298 89 0 chr1 48654695 48654819 -194009534 - MIR SINE MIR -109 153 19 204 304 49 39 chr1 48654810 48654912 -194009441 - L2 LINE L2 -536 2778 2676 * 2310 104 3 0 chr1 48655124 48655432 -194008921 + AluY SINE Alu 1 309 -2 2517 76 3 0 chr1 48657187 48657489 -194006864 - AluSp SINE Alu -10 303 1 1432 161 135 11 chr1 48657874 48658141 -194006212 + AluJo SINE Alu 3 302 0 339 273 125 61 chr1 48658219 48658611 -194005742 + L1MEd LINE L1 785 1260 -1230 287 54 0 0 chr1 48658614 48658651 -194005702 + AluS SINE Alu 47 83 -220 384 77 0 0 chr1 48658651 48658703 -194005650 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 326 205 192 96 chr1 48658819 48658975 -194005378 + L1ME3A LINE L1 5988 6158 -12 1736 177 0 42 chr1 48658997 48659308 -194005045 + AluJb SINE Alu 2 299 -13 601 253 91 25 chr1 48659356 48659597 -194004756 + L1MC4 LINE L1 6692 6948 -1094 1777 193 79 33 chr1 48659608 48659880 -194004473 + L1M4c LINE L1 30 330 -6054 2186 101 0 7 chr1 48659880 48660200 -194004153 + AluY SINE Alu 1 318 0 1777 193 79 33 chr1 48660200 48660346 -194004007 + L1M4c LINE L1 330 468 -5916 * 3289 148 157 27 chr1 48660344 48660437 -194003916 + L1M4c LINE L1 1351 1431 -4953 2094 128 38 0 chr1 48660437 48660726 -194003627 + AluSq SINE Alu 1 300 -13 3289 148 157 27 chr1 48660726 48661398 -194002955 + L1M4c LINE L1 1431 2215 -4169 2292 83 7 7 chr1 48661409 48661709 -194002644 + AluY SINE Alu 1 300 -11 1221 120 6 11 chr1 48661709 48661873 -194002480 + AluSg/x SINE Alu 132 296 -14 439 145 256 34 chr1 48661873 48662107 -194002246 + L1M4c LINE L1 2214 2499 -3885 1565 222 134 65 chr1 48662112 48662864 -194001489 + L1M4c LINE L1 2865 3668 -2714 857 153 13 32 chr1 48662874 48663031 -194001322 + AluJo SINE Alu 33 186 -126 288 146 0 0 chr1 48663065 48663106 -194001247 - AluJ/FRAM SINE Alu -46 256 216 293 140 0 0 chr1 48663238 48663295 -194001058 + L1MC4 LINE L1 7108 7164 -878 2226 113 0 13 chr1 48663306 48663608 -194000745 + AluSx SINE Alu 2 299 -13 240 250 0 0 chr1 48663978 48664038 -194000315 + GA-rich Low_complexity Low_complexity 6 65 0 271 279 94 57 chr1 48664397 48664789 -193999564 + L1MC4 LINE L1 7244 7755 -287 1840 156 10 7 chr1 48664789 48665078 -193999275 + AluSx SINE Alu 1 290 -22 271 279 94 57 chr1 48665078 48665159 -193999194 + L1MC4 LINE L1 7755 7832 -210 941 202 0 22 chr1 48665188 48665366 -193998987 - FAM SINE Alu -1 174 1 313 313 12 0 chr1 48665368 48665451 -193998902 + L2 LINE L2 3182 3265 -7 576 311 173 49 chr1 48665466 48666411 -193997942 + L2 LINE L2 1716 2777 -537 208 219 24 98 chr1 48666697 48666779 -193997574 + L2 LINE L2 3223 3298 -15 366 224 0 83 chr1 48666972 48667164 -193997189 + C-rich Low_complexity Low_complexity 3 178 0 522 296 78 29 chr1 48667873 48668079 -193996274 - L2 LINE L2 -5 3308 3093 1236 275 305 20 chr1 48668134 48668409 -193995944 - L2 LINE L2 -416 2898 2702 2299 84 3 0 chr1 48668409 48668767 -193995586 + AluSq SINE Alu 1 359 0 1236 275 305 20 chr1 48668767 48668809 -193995544 - L2 LINE L2 -612 2702 2673 2050 154 3 10 chr1 48668809 48669120 -193995233 + 7SLRNA srpRNA srpRNA 10 318 -2 1236 275 305 20 chr1 48669120 48669896 -193994457 - L2 LINE L2 -641 2673 1491 268 191 59 0 chr1 48670119 48670187 -193994166 - MER97a DNA MER1_type? -15 879 808 22 35 0 0 chr1 48670302 48670331 -193994022 + AT_rich Low_complexity Low_complexity 1 29 0 1392 205 59 39 chr1 48670450 48670715 -193993638 - MER97a DNA MER1_type? -182 871 613 2493 65 0 34 chr1 48670715 48671037 -193993316 - AluY SINE Alu 0 311 1 1392 205 59 39 chr1 48671037 48671569 -193992784 - MER97a DNA MER1_type? -440 613 4 183 250 50 17 chr1 48671608 48671668 -193992685 + L2 LINE L2 2946 3007 -265 * 200 250 0 0 chr1 48671656 48671700 -193992653 - L2 LINE L2 -1 3312 3269 368 212 91 30 chr1 48672896 48672995 -193991358 + MER5C DNA MER1_type 3 107 -217 575 157 0 0 chr1 48672995 48673078 -193991275 - AluJ/FLAM SINE Alu -228 84 2 473 274 172 15 chr1 48673078 48673282 -193991071 - L2 LINE L2 -951 2363 2128 213 333 0 0 chr1 48673281 48673338 -193991015 + L2 LINE L2 3211 3267 -5 * 1826 168 3 16 chr1 48673490 48673806 -193990547 + AluJo SINE Alu 1 312 0 359 236 95 27 chr1 48673969 48674164 -193990189 + L1ME1 LINE L1 5675 5878 -288 * 1439 109 60 64 chr1 48674154 48674275 -193990078 + L1MD3 LINE L1 7730 7850 -145 180 0 0 0 chr1 48674275 48674295 -193990058 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2000 94 0 0 chr1 48674299 48674553 -193989800 - AluY SINE Alu -37 274 21 1439 109 60 64 chr1 48674553 48674693 -193989660 + L1MD3 LINE L1 7853 7995 0 189 0 0 0 chr1 48674702 48674723 -193989630 + (A)n Simple_repeat Simple_repeat 1 21 0 1710 171 3 33 chr1 48674891 48675196 -193989157 + AluJo SINE Alu 1 296 -16 907 91 8 8 chr1 48675221 48675342 -193989011 - FLAM_C SINE Alu -17 126 6 2123 106 0 42 chr1 48675438 48675778 -193988575 - AluSp SINE Alu 0 313 1 23 0 0 0 chr1 48675798 48675821 -193988532 + AT_rich Low_complexity Low_complexity 1 23 0 2326 101 3 19 chr1 48675980 48676297 -193988056 + AluSx SINE Alu 1 312 0 411 223 0 64 chr1 48676833 48676990 -193987363 - MER31-int LTR ERV1 -3626 1310 1164 2414 93 7 3 chr1 48677219 48677529 -193986824 + AluSq SINE Alu 1 311 -2 2956 160 37 28 chr1 48678220 48678765 -193985588 - MER44D DNA MER2_type 0 605 1 2270 103 0 0 chr1 48678785 48679075 -193985278 + AluSq SINE Alu 1 290 -23 254 140 0 20 chr1 48680142 48680192 -193984161 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 867 129 0 0 chr1 48680192 48680308 -193984045 - FLAM_C SINE Alu -27 116 1 423 215 215 13 chr1 48680349 48680498 -193983855 + MER5A DNA MER1_type 11 189 0 275 184 61 129 chr1 48680870 48681017 -193983336 - L1ME3A LINE L1 -99 6071 5935 686 192 41 20 chr1 48681134 48681280 -193983073 - AluJo SINE Alu -77 235 87 527 223 222 5 chr1 48681282 48681501 -193982852 - L1ME3A LINE L1 -222 5948 5683 189 0 0 0 chr1 48683127 48683148 -193981205 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 25 51 0 0 chr1 48683270 48683309 -193981044 + AT_rich Low_complexity Low_complexity 1 39 0 1190 177 23 5 chr1 48683329 48683544 -193980809 - L1MC1 LINE L1 -17 6316 6098 2138 113 0 58 chr1 48683546 48683575 -193980778 - AluSq SINE Alu -3 310 281 480 35 0 0 chr1 48683575 48683633 -193980720 + (TG)n Simple_repeat Simple_repeat 1 58 0 2138 113 0 58 chr1 48683633 48683932 -193980421 - AluSq SINE Alu -32 281 1 1032 126 94 4 chr1 48683932 48684117 -193980236 - L1MCa LINE L1 -3947 2479 2318 1559 158 28 84 chr1 48684117 48684439 -193979914 - AluJb SINE Alu -8 304 1 1032 126 94 4 chr1 48684439 48684484 -193979869 - L1MCa LINE L1 -4108 2318 2278 2260 181 107 38 chr1 48684495 48685121 -193979232 + L1MC4 LINE L1 7199 7856 -12 605 159 60 46 chr1 48685135 48685286 -193979067 + Charlie2 DNA MER1_type 2648 2800 -62 511 78 65 0 chr1 48685286 48685363 -193978990 + L1MC1 LINE L1 6025 6106 -227 1095 149 6 6 chr1 48685364 48685566 -193978787 + AluSg/x SINE Alu 135 336 0 1056 153 40 195 chr1 48685594 48685895 -193978458 - L1MC4a LINE L1 -1506 6302 5956 2114 111 50 0 chr1 48685895 48686066 -193978287 - AluSx SINE Alu 0 312 118 369 0 0 0 chr1 48686066 48686107 -193978246 + (TG)n Simple_repeat Simple_repeat 2 42 0 2114 111 50 0 chr1 48686107 48686232 -193978121 - AluSx SINE Alu -194 118 1 1056 153 40 195 chr1 48686232 48686260 -193978093 - L1MC4a LINE L1 -1852 5956 5925 1867 104 0 110 chr1 48686260 48686681 -193977672 - AluSx SINE Alu 0 386 1 1056 153 40 195 chr1 48686681 48686783 -193977570 - L1MC4a LINE L1 -1883 5925 5962 1688 193 0 0 chr1 48686783 48687057 -193977296 - AluJo SINE Alu -38 274 1 1056 153 40 195 chr1 48687057 48687150 -193977203 - L1MC4a LINE L1 -1845 5963 5857 813 159 0 0 chr1 48687156 48687282 -193977071 + AluJo SINE Alu 6 131 -181 2505 82 0 0 chr1 48687329 48687633 -193976720 + AluY SINE Alu 1 304 -7 1455 183 35 3 chr1 48687691 48688030 -193976323 + L1 LINE L1 3117 3466 -2680 990 149 39 7 chr1 48688037 48688191 -193976162 + AluJo SINE Alu 129 287 -25 1944 161 9 6 chr1 48688191 48688539 -193975814 + L1 LINE L1 3780 4128 -2018 918 76 0 0 chr1 48688578 48688696 -193975657 - L1PA7 LINE L1 -3 6151 6034 4746 72 31 60 chr1 48688696 48689432 -193974921 + L1P LINE L1 4536 5250 -896 42 0 0 0 chr1 48689432 48689474 -193974879 + AT_rich Low_complexity Low_complexity 1 42 0 2437 83 0 6 chr1 48689479 48689792 -193974561 + AluY SINE Alu 1 311 0 6343 142 13 67 chr1 48689800 48689937 -193974416 + L1 LINE L1 4113 4256 -1890 2192 131 0 0 chr1 48689937 48690249 -193974104 + AluSx SINE Alu 1 312 0 6343 142 13 67 chr1 48690249 48690664 -193973689 + L1 LINE L1 4256 4692 -1454 2325 118 3 0 chr1 48690664 48690968 -193973385 + AluSp SINE Alu 1 305 -8 2405 91 7 3 chr1 48690978 48691287 -193973066 + AluY SINE Alu 1 310 -1 6343 142 13 67 chr1 48691287 48692058 -193972295 + L1 LINE L1 4701 5376 -770 740 225 106 0 chr1 48692058 48692209 -193972144 + MER8 DNA MER2_type 72 238 -1 2314 102 0 0 chr1 48692487 48692780 -193971573 + AluSq SINE Alu 5 297 -16 239 217 98 65 chr1 48692915 48693007 -193971346 + MER34 LTR ERV1 443 537 -5 486 282 0 0 chr1 48693308 48693432 -193970921 - L1PB4 LINE L1 -4 6152 6029 699 152 0 0 chr1 48693438 48693543 -193970810 + FLAM_A SINE Alu 29 133 -9 2264 88 3 14 chr1 48693823 48694117 -193970236 - AluSp SINE Alu -22 291 1 198 0 0 0 chr1 48694186 48694208 -193970145 + (GA)n Simple_repeat Simple_repeat 2 23 0 649 138 0 49 chr1 48694228 48694351 -193970002 - FRAM SINE Alu -1 175 59 2085 157 39 70 chr1 48694356 48694512 -193969841 + Charlie1b DNA MER1_type 1 160 -2601 1991 129 70 0 chr1 48694512 48694799 -193969554 - AluSx SINE Alu -5 307 1 2085 157 39 70 chr1 48694799 48695182 -193969171 + Charlie1b DNA MER1_type 160 523 0 510 125 0 0 chr1 48695198 48695278 -193969075 + (TG)n Simple_repeat Simple_repeat 1 80 0 541 131 243 0 chr1 48695866 48695973 -193968380 - FLAM_C SINE Alu 0 133 1 494 190 190 87 chr1 48695974 48696040 -193968313 - MER58A DNA MER1_type -2205 215 157 1582 134 130 4 chr1 48696040 48696301 -193968052 - AluJb SINE Alu -14 298 5 494 190 190 87 chr1 48696301 48696429 -193967924 - MER58A DNA MER1_type -2263 157 1 1446 253 106 2 chr1 48696556 48696963 -193967390 + LTR16A LTR ERVL 1 449 -1 1118 245 103 5 chr1 48697045 48697441 -193966912 + L2 LINE L2 565 999 -2315 708 205 70 29 chr1 48697444 48697615 -193966738 + MLT1B LTR MaLR 1 178 -212 1881 139 21 7 chr1 48697770 48698077 -193966276 + AluJb SINE Alu 1 311 0 433 224 16 0 chr1 48698340 48698465 -193965888 + (TA)n Simple_repeat Simple_repeat 1 127 0 569 201 79 127 chr1 48698467 48698617 -193965736 + MLT1B LTR MaLR 157 310 -80 1818 169 0 29 chr1 48698617 48698931 -193965422 + AluJb SINE Alu 1 305 -7 569 201 79 127 chr1 48698931 48699009 -193965344 + MLT1B LTR MaLR 310 390 0 1997 237 182 42 chr1 48699009 48699666 -193964687 + L2 LINE L2 1006 1845 -1469 2225 89 4 0 chr1 48699666 48699988 -193964365 - AluSp SINE Alu 0 327 5 1997 237 182 42 chr1 48699988 48700300 -193964053 + L2 LINE L2 1845 2112 -1202 2001 145 3 41 chr1 48700344 48700662 -193963691 - AluJo SINE Alu -2 310 5 757 236 48 62 chr1 48700709 48701018 -193963335 + L2 LINE L2 2958 3262 -51 363 192 0 0 chr1 48701018 48701091 -193963262 + (TA)n Simple_repeat Simple_repeat 1 73 0 238 150 0 0 chr1 48701091 48701131 -193963222 + L2 LINE L2 3273 3312 -1 938 125 0 28 chr1 48701238 48701382 -193962971 - FLAM_C SINE Alu 0 143 4 1468 191 37 43 chr1 48701481 48701780 -193962573 - AluJo SINE Alu -14 298 2 2166 120 3 0 chr1 48702363 48702662 -193961691 - AluSg SINE Alu -10 300 1 1866 153 13 32 chr1 48702929 48703237 -193961116 + AluJo SINE Alu 1 302 -10 259 319 55 18 chr1 48704253 48704416 -193959937 + L1MEd LINE L1 3 171 -5948 2007 142 10 16 chr1 48704456 48704759 -193959594 + AluSx SINE Alu 1 301 -11 622 160 28 0 chr1 48704934 48705040 -193959313 - AluSg/x SINE Alu -10 299 191 1901 169 10 0 chr1 48705166 48705462 -193958891 + AluJb SINE Alu 5 303 -9 234 172 97 43 chr1 48705464 48705557 -193958796 + L1ME LINE L1 3849 3946 -2200 2417 80 0 0 chr1 48705638 48705939 -193958414 + AluY SINE Alu 1 301 -10 2384 107 0 0 chr1 48705949 48706249 -193958104 + AluSg SINE Alu 1 300 -10 518 262 37 26 chr1 48706272 48706463 -193957890 + L1ME LINE L1 4791 4983 -1163 654 201 0 85 chr1 48706500 48706572 -193957781 - LTR41 LTR ERVL -7 766 689 1766 147 22 26 chr1 48706572 48706884 -193957469 + AluJo SINE Alu 1 311 -1 654 201 0 85 chr1 48706884 48707010 -193957343 - LTR41 LTR ERVL -84 689 585 400 94 0 0 chr1 48707191 48707244 -193957109 + Alu SINE Alu 1 53 -249 2080 123 10 19 chr1 48707440 48707750 -193956603 + AluSc SINE Alu 1 307 -2 687 262 0 12 chr1 48707756 48707924 -193956429 - LTR41 LTR ERVL -595 178 13 608 274 70 15 chr1 48707942 48708201 -193956152 + L1ME LINE L1 5006 5278 -868 1808 244 53 29 chr1 48708205 48708786 -193955567 + MLT1G LTR MaLR 1 590 0 2297 113 0 0 chr1 48708801 48709102 -193955251 - AluSx SINE Alu 0 312 12 527 251 76 14 chr1 48709124 48709141 -193955212 + L1ME LINE L1 5290 5304 -860 1778 165 6 38 chr1 48709141 48709457 -193954896 + AluJo SINE Alu 1 306 -6 527 251 76 14 chr1 48709457 48709662 -193954691 + L1ME LINE L1 5304 5526 -638 242 243 131 9 chr1 48709671 48709778 -193954575 - LTR16C LTR ERVL -10 481 362 897 273 7 22 chr1 48710150 48710421 -193953932 + L1ME LINE L1 5522 5788 -382 294 29 0 0 chr1 48711027 48711062 -193953291 + (TG)n Simple_repeat Simple_repeat 1 35 0 656 147 0 0 chr1 48711067 48711162 -193953191 - AluS SINE Alu -213 99 5 634 306 106 11 chr1 48712135 48712485 -193951868 - L2 LINE L2 0 3313 2931 2717 250 76 42 chr1 48712485 48712670 -193951683 + L2 LINE L2 1527 1704 -1610 2271 122 3 0 chr1 48712670 48712981 -193951372 + AluSx SINE Alu 1 312 0 2717 250 76 42 chr1 48712981 48713451 -193950902 + L2 LINE L2 1704 2156 -1158 1571 156 87 3 chr1 48713451 48713621 -193950732 - AluJo SINE Alu 0 312 158 261 0 0 0 chr1 48713621 48713650 -193950703 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1571 156 87 3 chr1 48713650 48713767 -193950586 - AluJo SINE Alu -154 158 1 2717 250 76 42 chr1 48713767 48714158 -193950195 + L2 LINE L2 2156 2610 -704 353 293 241 16 chr1 48714465 48715150 -193949203 - L2 LINE L2 -664 2650 1812 39 68 0 0 chr1 48715227 48715301 -193949052 + AT_rich Low_complexity Low_complexity 1 74 0 821 108 42 0 chr1 48715465 48715585 -193948768 + FRAM SINE Alu 48 172 -4 1951 174 3 6 chr1 48715630 48715981 -193948372 + L1PB4 LINE L1 5806 6155 -1 2071 128 123 10 chr1 48716460 48716662 -193947691 + MSTB LTR MaLR 1 179 -247 360 0 0 0 chr1 48716662 48716702 -193947651 + (TC)n Simple_repeat Simple_repeat 1 40 0 2071 128 123 10 chr1 48716702 48716882 -193947471 + MSTB LTR MaLR 179 426 0 1991 142 27 0 chr1 48717854 48718149 -193946204 + AluSx SINE Alu 1 303 -9 927 204 94 8 chr1 48718517 48718752 -193945601 + LTR16A1 LTR ERVL 201 455 -2 27 49 0 0 chr1 48719054 48719095 -193945258 + AT_rich Low_complexity Low_complexity 1 41 0 765 271 53 26 chr1 48719256 48719617 -193944736 - L1ME3A LINE L1 -281 5889 5522 504 60 0 0 chr1 48719671 48719738 -193944615 - Alu SINE Alu -243 68 2 283 236 111 42 chr1 48720337 48720481 -193943872 + HAL1b LINE L1 1189 1342 -6 334 202 12 24 chr1 48720791 48720875 -193943478 + MER90 LTR ERV1 344 426 -149 237 264 14 14 chr1 48720911 48720983 -193943370 + LTR65 LTR ERV1 578 649 -20 2564 227 52 11 chr1 48721365 48721999 -193942354 - L1ME3 LINE L1 -3 6159 5500 1577 148 29 65 chr1 48722012 48722322 -193942031 - AluJo SINE Alu -12 300 2 2527 188 18 26 chr1 48722598 48722821 -193941532 - MER66B LTR ERV1 0 486 263 2172 114 3 0 chr1 48722821 48723110 -193941243 - AluSx SINE Alu -22 290 1 2527 188 18 26 chr1 48723110 48723376 -193940977 - MER66B LTR ERV1 -223 263 1 13487 116 10 44 chr1 48723376 48724263 -193940090 - MER66B-int LTR ERV1 0 6676 5760 2112 112 7 0 chr1 48724263 48724558 -193939795 - AluSx SINE Alu -15 297 1 13487 116 10 44 chr1 48724558 48725971 -193938382 - MER66B-int LTR ERV1 -916 5760 4608 668 40 20 30 chr1 48725972 48726071 -193938282 + AluY SINE Alu 214 311 0 8900 272 30 26 chr1 48726073 48726157 -193938196 - MER66A-int LTR ERV1 -1906 5850 5768 2232 101 0 3 chr1 48726157 48726464 -193937889 + AluSg SINE Alu 1 306 -4 8900 272 30 26 chr1 48726464 48729667 -193934686 - MER66A-int LTR ERV1 -1988 5768 2578 2255 103 0 0 chr1 48729667 48729966 -193934387 + AluY SINE Alu 1 299 -12 2348 80 0 3 chr1 48729966 48730268 -193934085 + AluY SINE Alu 1 301 -10 8900 272 30 26 chr1 48729967 48731546 -193932807 - MER66A-int LTR ERV1 -5178 2578 1510 2081 114 10 3 chr1 48731546 48731843 -193932510 + AluSx SINE Alu 1 299 -13 8900 272 30 26 chr1 48731843 48732146 -193932207 - MER66A-int LTR ERV1 -6246 1510 1210 683 214 14 14 chr1 48732232 48732377 -193931976 - MER66A-int LTR ERV1 -3573 3103 2959 264 92 123 92 chr1 48732470 48732535 -193931818 - MER66A-int LTR ERV1 -5562 1114 1048 542 342 18 9 chr1 48732546 48732774 -193931579 - MER66A-int LTR ERV1 -2254 6372 6143 3420 209 95 44 chr1 48732784 48733693 -193930660 - MER66A-int LTR ERV1 -5709 967 13 2207 164 30 54 chr1 48733715 48733819 -193930534 - MER66A LTR ERV1 0 478 373 2202 109 0 0 chr1 48733819 48734112 -193930241 - AluSx SINE Alu -19 293 1 2207 164 30 54 chr1 48734112 48734470 -193929883 - MER66A LTR ERV1 -105 373 27 451 198 94 9 chr1 48734481 48734587 -193929766 + MER63 DNA MER1_type 1 741 -321 1166 246 88 75 chr1 48734588 48734964 -193929389 + L1ME3A LINE L1 5532 5902 -268 1776 180 0 0 chr1 48734964 48735259 -193929094 + AluJb SINE Alu 1 295 -17 1166 246 88 75 chr1 48735259 48735405 -193928948 + L1ME3A LINE L1 5902 6066 -104 2258 168 8 11 chr1 48735405 48735780 -193928573 + MLT1A2 LTR MaLR 1 374 0 1166 246 88 75 chr1 48735780 48735882 -193928471 + L1ME3A LINE L1 6066 6165 -5 411 21 0 0 chr1 48736706 48736754 -193927599 + (CA)n Simple_repeat Simple_repeat 1 48 0 2149 100 0 19 chr1 48737698 48738007 -193926346 - AluSx SINE Alu -9 303 1 794 260 45 5 chr1 48738007 48738177 -193926176 + MIR SINE MIR 20 182 -80 327 25 0 0 chr1 48738177 48738217 -193926136 + (TG)n Simple_repeat Simple_repeat 2 41 0 1626 158 7 30 chr1 48738225 48738529 -193925824 + AluJo SINE Alu 1 297 -15 794 260 45 5 chr1 48738529 48738572 -193925781 + MIR SINE MIR 188 251 -11 351 0 0 0 chr1 48738580 48738619 -193925734 + (TTA)n Simple_repeat Simple_repeat 3 41 0 538 219 47 0 chr1 48739081 48739209 -193925144 + MER63 DNA MER1_type 1 760 -76 521 295 62 9 chr1 48739210 48739437 -193924916 - L2 LINE L2 -1122 2192 1954 365 239 252 25 chr1 48739923 48740082 -193924271 - MIR SINE MIR -40 222 28 608 270 6 6 chr1 48740090 48740249 -193924104 - MER20 DNA MER1_type -32 187 29 581 214 0 0 chr1 48742073 48742190 -193922163 + MIR SINE MIR 103 219 -43 1504 121 46 68 chr1 48742233 48742514 -193921839 + AluJb SINE Alu 1 275 -37 198 0 0 0 chr1 48742519 48742541 -193921812 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4149 156 129 25 chr1 48742935 48743100 -193921253 - Charlie1a DNA MER1_type -1349 1412 1266 2221 101 0 0 chr1 48743100 48743396 -193920957 - AluSq SINE Alu -17 296 1 4149 156 129 25 chr1 48743396 48744250 -193920103 - Charlie1a DNA MER1_type -1495 1266 286 317 152 40 184 chr1 48744262 48744323 -193920030 + L1M4 LINE L1 4752 4788 -1358 2229 105 3 0 chr1 48744323 48744629 -193919724 - AluSp SINE Alu -6 307 1 317 152 40 184 chr1 48744629 48744692 -193919661 + L1M4 LINE L1 4788 4858 -1288 815 142 0 16 chr1 48744693 48744820 -193919533 - FLAM_C SINE Alu -10 133 9 2565 229 85 29 chr1 48744830 48745272 -193919081 + L1PA6 LINE L1 4844 5260 -894 1751 154 33 13 chr1 48745272 48745571 -193918782 + AluJo SINE Alu 1 305 -7 2565 229 85 29 chr1 48745571 48746368 -193917985 + L1PA6 LINE L1 5260 6154 0 1233 211 12 80 chr1 48746389 48746442 -193917911 - Charlie1a DNA MER1_type -2448 313 258 2000 138 0 0 chr1 48746442 48746754 -193917599 + AluSx SINE Alu 1 312 0 1233 211 12 80 chr1 48746754 48747035 -193917318 - Charlie1a DNA MER1_type -2503 258 1 297 0 0 0 chr1 48747393 48747426 -193916927 + (CA)n Simple_repeat Simple_repeat 2 34 0 312 332 114 10 chr1 48747752 48747945 -193916408 + MIR SINE MIR 18 230 -32 627 289 69 26 chr1 48748221 48748453 -193915900 - MIR SINE MIR -19 243 2 318 314 48 0 chr1 48749403 48749508 -193914845 + L2 LINE L2 3163 3272 0 186 235 0 0 chr1 48752547 48752590 -193911763 - MIR SINE MIR -51 157 114 294 29 0 0 chr1 48753545 48753580 -193910773 + (TG)n Simple_repeat Simple_repeat 1 35 0 227 177 89 13 chr1 48754307 48754386 -193909967 + (CCGGG)n Simple_repeat Simple_repeat 4 88 0 24 0 0 0 chr1 48754426 48754450 -193909903 + GC_rich Low_complexity Low_complexity 1 24 0 306 336 71 25 chr1 48755018 48755301 -193909052 - L2 LINE L2 -57 3215 2920 241 345 82 9 chr1 48755620 48755950 -193908403 + L2 LINE L2 2301 2654 -660 2142 120 10 0 chr1 48755964 48756273 -193908080 - AluSp SINE Alu -1 312 1 400 333 87 50 chr1 48756286 48756749 -193907604 + L2 LINE L2 2626 3169 -144 2155 109 3 3 chr1 48756749 48757052 -193907301 - AluSq SINE Alu -10 303 1 400 333 87 50 chr1 48757052 48757203 -193907150 + L2 LINE L2 3169 3313 0 654 253 45 11 chr1 48757366 48757544 -193906809 - MIR SINE MIR -77 185 2 2156 124 0 0 chr1 48758062 48758369 -193905984 - AluSx SINE Alu -5 307 1 2268 100 0 0 chr1 48758928 48759228 -193905125 - AluSx SINE Alu -12 300 1 477 108 0 0 chr1 48759236 48759301 -193905052 - Alu SINE Alu -12 297 233 207 317 163 32 chr1 48759568 48759789 -193904564 - L2 LINE L2 -41 3272 3023 2228 100 3 7 chr1 48761078 48761387 -193902966 - AluSx SINE Alu -4 308 1 2095 107 43 0 chr1 48761742 48762041 -193902312 + AluSx SINE Alu 1 312 0 181 250 0 0 chr1 48764269 48764305 -193900048 + L2 LINE L2 3253 3288 -25 323 261 33 0 chr1 48765397 48765489 -193898864 + MIR SINE MIR 113 207 -55 210 259 56 0 chr1 48765554 48765608 -193898745 + L2 LINE L2 3242 3298 -15 * 451 280 61 37 chr1 48765588 48765802 -193898551 - MIR SINE MIR -37 225 7 1618 186 28 0 chr1 48765805 48766096 -193898257 - AluJo SINE Alu -9 303 5 2072 92 10 14 chr1 48766102 48766445 -193897908 - AluSq SINE Alu 0 313 1 351 0 0 0 chr1 48767350 48767389 -193896964 + (TG)n Simple_repeat Simple_repeat 2 40 0 325 234 90 36 chr1 48769555 48769666 -193894687 + L1ME4a LINE L1 6005 6121 0 331 93 0 0 chr1 48769836 48769879 -193894474 + 5S rRNA rRNA 1 43 -78 247 336 89 20 chr1 48769882 48770028 -193894325 - MIR3 SINE MIR -42 166 11 192 125 0 0 chr1 48770285 48770317 -193894036 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 260 154 0 chr1 48772104 48772208 -193892145 + L2 LINE L2 3175 3294 -19 195 69 0 0 chr1 48772218 48772247 -193892106 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 2299 71 3 37 chr1 48775119 48775235 -193889118 + AluSp SINE Alu 1 119 -194 2194 99 0 13 chr1 48775235 48775539 -193888814 + AluY SINE Alu 1 300 -11 2299 71 3 37 chr1 48775539 48775739 -193888614 + AluSp SINE Alu 119 308 -5 2383 61 0 46 chr1 48775739 48776065 -193888288 + AluY SINE Alu 1 311 0 2037 50 109 32 chr1 48776591 48776874 -193887479 + AluY SINE Alu 1 305 -6 313 223 165 0 chr1 48777372 48777493 -193886860 - L2 LINE L2 -3 3269 3129 185 340 84 42 chr1 48777596 48777811 -193886542 - L2 LINE L2 -343 2971 2748 2396 81 3 0 chr1 48778141 48778450 -193885903 - AluSx SINE Alu -2 310 1 298 280 110 0 chr1 48778451 48778551 -193885802 - L2 LINE L2 -19 3294 3184 198 103 26 51 chr1 48779003 48779042 -193885311 - MIR SINE MIR -15 247 210 329 308 170 6 chr1 48779582 48779741 -193884612 + MIR SINE MIR 31 215 -47 2066 133 0 0 chr1 48780110 48780410 -193883943 + AluJb SINE Alu 1 300 -12 2207 88 7 3 chr1 48780460 48780755 -193883598 + AluSx SINE Alu 1 296 -16 183 216 0 0 chr1 48780860 48780897 -193883456 + L2 LINE L2 3241 3277 -36 2164 93 33 3 chr1 48780981 48781281 -193883072 - AluSq SINE Alu -4 309 1 1789 137 3 49 chr1 48782721 48783028 -193881325 + AluJb SINE Alu 1 293 -19 709 272 33 5 chr1 48784573 48784757 -193879596 - MIR SINE MIR -50 212 24 2367 93 0 3 chr1 48790015 48790327 -193874026 + AluY SINE Alu 1 311 0 1397 167 91 19 chr1 48790329 48790592 -193873761 - AluJb SINE Alu -30 282 1 285 307 97 26 chr1 48790967 48791081 -193873272 + MIR SINE MIR 2 123 -139 1314 157 32 0 chr1 48791081 48791297 -193873056 - AluJb SINE Alu -2 310 88 1899 143 13 10 chr1 48791297 48791597 -193872756 - AluJo SINE Alu -11 301 1 224 224 104 15 chr1 48791598 48791665 -193872688 + MIR SINE MIR 120 192 -70 321 324 73 16 chr1 48791722 48791969 -193872384 + L2 LINE L2 2839 3099 -173 265 259 6 0 chr1 48793958 48794047 -193870306 - MIR SINE MIR -73 135 43 5279 146 34 56 chr1 48794498 48795417 -193868936 + MER49 LTR ERV1 1 900 -23 1848 119 97 0 chr1 48795417 48795695 -193868658 - AluSq SINE Alu -8 305 1 5279 146 34 56 chr1 48795695 48795719 -193868634 + MER49 LTR ERV1 900 923 0 2048 110 0 52 chr1 48795892 48796059 -193868294 - AluSx SINE Alu -9 303 158 1901 103 16 62 chr1 48796059 48796380 -193867973 - AluSx SINE Alu -2 310 5 2048 110 0 52 chr1 48796380 48796520 -193867833 - AluSx SINE Alu -154 158 12 380 311 8 30 chr1 48796658 48796790 -193867563 - L2 LINE L2 -14 3299 3171 585 303 56 4 chr1 48797076 48797307 -193867046 - L2 LINE L2 -654 2660 2418 274 308 145 60 chr1 48798340 48798574 -193865779 + L2 LINE L2 3007 3260 -12 219 282 129 25 chr1 48800050 48800213 -193864140 + L2 LINE L2 2791 2970 -344 1160 326 151 23 chr1 48801016 48802192 -193862161 + L2 LINE L2 1648 2973 -341 198 0 0 0 chr1 48803402 48803424 -193860929 + (CTG)n Simple_repeat Simple_repeat 2 23 0 26 74 0 0 chr1 48805333 48805387 -193858966 + GC_rich Low_complexity Low_complexity 1 54 0 252 0 0 0 chr1 48805394 48805422 -193858931 + (CCG)n Simple_repeat Simple_repeat 3 30 0 31 26 0 0 chr1 48805437 48805475 -193858878 + GC_rich Low_complexity Low_complexity 1 38 0 205 202 48 12 chr1 48805553 48805637 -193858716 + (CCCG)n Simple_repeat Simple_repeat 2 88 0 981 280 125 12 chr1 48810296 48810838 -193853515 + L2 LINE L2 2691 3311 -2 331 311 104 22 chr1 48810853 48810988 -193853365 + L2 LINE L2 3110 3255 -17 861 146 168 38 chr1 48811452 48811637 -193852716 + MER3 DNA MER1_type 1 209 0 1325 139 48 0 chr1 48811649 48811858 -193852495 + MER20 DNA MER1_type 1 219 0 1673 164 39 0 chr1 48815094 48815380 -193848973 - AluJb SINE Alu -15 297 1 452 291 89 28 chr1 48815400 48815613 -193848740 + MIR SINE MIR 34 259 -3 189 315 90 0 chr1 48815919 48816008 -193848345 - MIR SINE MIR -72 136 40 486 262 16 16 chr1 48819340 48819462 -193844891 + L2 LINE L2 3190 3311 -2 282 145 174 0 chr1 48821544 48821613 -193842740 + MIR SINE MIR 70 150 -112 644 317 126 45 chr1 48821811 48822571 -193841782 - L2 LINE L2 -2 3270 2443 572 299 60 17 chr1 48822932 48823166 -193841187 - MIR SINE MIR -6 256 13 464 180 8 109 chr1 48828697 48828736 -193835617 + MLT1C-int LTR MaLR 1257 1298 -73 811 133 15 30 chr1 48828736 48828871 -193835482 - FLAM_A SINE Alu 0 133 1 464 180 8 109 chr1 48828871 48828959 -193835394 + MLT1C-int LTR MaLR 1298 1371 0 2257 178 50 24 chr1 48828959 48829414 -193834939 + MLT1C LTR MaLR 1 467 0 908 320 32 48 chr1 48829581 48830106 -193834247 - L2 LINE L2 -733 2581 2065 225 178 0 0 chr1 48832092 48832137 -193832216 + (TA)n Simple_repeat Simple_repeat 2 46 0 2237 106 0 0 chr1 48832290 48832591 -193831762 + AluSx SINE Alu 1 301 -11 402 359 66 6 chr1 48832793 48832974 -193831379 - MIR SINE MIR -65 197 6 316 326 22 37 chr1 48833086 48833221 -193831132 + L2 LINE L2 2706 2838 -476 421 341 100 41 chr1 48833270 48833590 -193830763 + L2 LINE L2 2925 3263 -9 193 256 279 0 chr1 48833745 48833831 -193830522 - L2 LINE L2 -1 3312 3203 685 329 159 5 chr1 48833959 48834394 -193829959 - L2 LINE L2 -353 2961 2460 365 232 112 16 chr1 48834414 48834539 -193829814 + L2 LINE L2 3168 3304 -9 180 0 0 0 chr1 48834541 48834561 -193829792 + (TGGA)n Simple_repeat Simple_repeat 3 22 0 269 254 115 67 chr1 48838565 48838730 -193825623 - MIR SINE MIR -24 238 66 205 191 131 12 chr1 48838926 48839010 -193825343 - L2 LINE L2 -208 3064 2971 2517 55 0 0 chr1 48839087 48839396 -193824957 + AluY SINE Alu 1 309 -2 182 326 163 32 chr1 48839432 48839653 -193824700 - L2 LINE L2 -441 2873 2624 244 268 37 37 chr1 48839782 48839864 -193824489 + MIR SINE MIR 13 94 -168 513 320 26 106 chr1 48840251 48840474 -193823879 - L1MEd LINE L1 -5450 669 430 2219 99 20 0 chr1 48840474 48840778 -193823575 + AluSg SINE Alu 1 310 0 513 320 26 106 chr1 48840778 48841270 -193823083 - L1MEd LINE L1 -5689 430 11 467 341 231 15 chr1 48841270 48842136 -193822217 + L2 LINE L2 1919 2971 -343 417 229 83 117 chr1 48842143 48842254 -193822099 - LTR41 LTR ERVL -7 766 653 237 65 0 0 chr1 48842254 48842285 -193822068 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 417 229 83 117 chr1 48842285 48842413 -193821940 - LTR41 LTR ERVL -120 653 535 538 156 55 106 chr1 48842701 48842727 -193821626 + MER53 DNA DNA 1 27 -162 2037 97 45 0 chr1 48842727 48843015 -193821338 - AluSg SINE Alu -9 301 1 538 156 55 106 chr1 48843015 48843049 -193821304 + MER53 DNA DNA 27 61 -128 2204 68 46 0 chr1 48843049 48843330 -193821023 - AluY SINE Alu -17 294 1 1711 142 89 4 chr1 48843330 48843611 -193820742 - AluJo SINE Alu -7 305 1 538 156 55 106 chr1 48843611 48843671 -193820682 + MER53 DNA DNA 60 121 -68 1623 168 0 55 chr1 48843671 48843981 -193820372 + AluJo SINE Alu 1 293 -19 538 156 55 106 chr1 48843981 48844009 -193820344 + MER53 DNA DNA 121 149 -40 2247 93 0 0 chr1 48844009 48844299 -193820054 - AluSc SINE Alu -19 290 1 538 156 55 106 chr1 48844299 48844345 -193820008 + MER53 DNA DNA 149 189 0 426 294 120 11 chr1 48844475 48844751 -193819602 - L2 LINE L2 -624 2690 2385 315 235 224 0 chr1 48844756 48844854 -193819499 - LTR33 LTR ERVL -399 122 3 697 294 122 15 chr1 48844854 48845249 -193819104 - L2 LINE L2 -965 2349 1913 521 144 16 32 chr1 48845395 48845520 -193818833 + CT-rich Low_complexity Low_complexity 3 125 0 354 296 52 17 chr1 48846287 48846459 -193817894 + L2 LINE L2 2174 2351 -963 479 228 71 62 chr1 48846660 48846871 -193817482 + L2 LINE L2 3101 3313 0 41 58 0 0 chr1 48848293 48848362 -193815991 + GC_rich Low_complexity Low_complexity 1 69 0 356 257 44 44 chr1 48849283 48849419 -193814934 - MIR SINE MIR -43 219 84 216 287 74 9 chr1 48851764 48851872 -193812481 - L2 LINE L2 -557 2757 2643 412 335 65 5 chr1 48852058 48852273 -193812080 - L2 LINE L2 -923 2391 2164 436 289 94 0 chr1 48852281 48852430 -193811923 + MER5B DNA MER1_type 13 175 -3 213 311 0 0 chr1 48852627 48852688 -193811665 + MER91B DNA MER1_type 1 61 -129 2336 76 7 0 chr1 48855161 48855464 -193808889 + AluSg SINE Alu 1 305 -5 651 108 155 0 chr1 48855469 48855598 -193808755 - L1MA7 LINE L1 -5 6286 6138 253 104 42 0 chr1 48855595 48855643 -193808710 + L1MA7 LINE L1 6082 6131 -160 * 2217 100 3 3 chr1 48855825 48856134 -193808219 - AluSq SINE Alu -2 311 3 2082 118 0 0 chr1 48856147 48856444 -193807909 - AluY SINE Alu -14 297 1 620 187 81 0 chr1 48856486 48856609 -193807744 + FLAM_A SINE Alu 1 133 0 950 260 109 53 chr1 48856638 48857069 -193807284 + L2 LINE L2 200 654 -2660 193 171 73 0 chr1 48857081 48857122 -193807231 + L2 LINE L2 3265 3308 -5 656 236 74 57 chr1 48857312 48857408 -193806945 + L1MC5 LINE L1 7624 7717 -244 2231 98 16 0 chr1 48857408 48857715 -193806638 - AluSp SINE Alu -1 312 1 656 236 74 57 chr1 48857715 48857915 -193806438 + L1MC5 LINE L1 7717 7925 -36 2092 64 3 100 chr1 48858143 48858472 -193805881 - AluSp SINE Alu -16 297 1 247 330 66 0 chr1 48858547 48858653 -193805700 + L2 LINE L2 2156 2268 -1046 465 330 88 48 chr1 48858659 48859059 -193805294 + L2 LINE L2 1707 2122 -1192 448 258 129 0 chr1 48859276 48859431 -193804922 - MIR SINE MIR -1 261 87 2246 104 0 22 chr1 48859465 48859782 -193804571 - AluSx SINE Alu -2 310 1 306 296 130 37 chr1 48860090 48860360 -193803993 + L2 LINE L2 2555 2849 -465 2143 124 24 48 chr1 48860719 48860875 -193803478 + MLT1A1 LTR MaLR 1 159 -206 1827 171 7 3 chr1 48860875 48861174 -193803179 + AluJo SINE Alu 1 300 -12 2143 124 24 48 chr1 48861174 48861389 -193802964 + MLT1A1 LTR MaLR 159 363 -2 350 295 131 38 chr1 48861408 48861508 -193802845 - L2 LINE L2 -1092 2222 2133 1814 123 6 63 chr1 48861508 48861681 -193802672 - AluJb SINE Alu -13 299 118 2161 87 42 0 chr1 48861681 48861969 -193802384 - AluY SINE Alu -11 300 1 2219 93 10 0 chr1 48861969 48862270 -193802083 - AluSx SINE Alu -8 304 1 2144 102 3 0 chr1 48862275 48862569 -193801784 - AluSq SINE Alu -18 295 1 1814 123 6 63 chr1 48862569 48862705 -193801648 - AluJb SINE Alu -197 115 1 350 295 131 38 chr1 48862705 48862977 -193801376 - L2 LINE L2 -1181 2133 1815 195 263 132 26 chr1 48864900 48864976 -193799377 + MIR SINE MIR 61 144 -118 205 383 77 25 chr1 48865150 48865385 -193798968 + L2 LINE L2 1005 1251 -2063 2378 89 0 3 chr1 48865410 48865723 -193798630 + AluSx SINE Alu 1 312 0 363 280 73 38 chr1 48865798 48866087 -193798266 + L1ME4a LINE L1 4349 4647 -1499 1782 163 6 10 chr1 48866373 48866686 -193797667 + AluJb SINE Alu 1 312 0 1847 130 11 7 chr1 48866830 48867114 -193797239 + AluSx SINE Alu 1 285 -27 352 0 125 0 chr1 48867114 48867202 -193797151 + (TA)n Simple_repeat Simple_repeat 2 100 0 308 189 36 117 chr1 48867205 48867316 -193797037 + L1MCa LINE L1 1954 2055 -4371 488 299 130 28 chr1 48867447 48867871 -193796482 + L1ME4a LINE L1 5373 5839 -282 1615 175 28 14 chr1 48867872 48868163 -193796190 + AluJo SINE Alu 1 295 -17 299 188 31 0 chr1 48868171 48868235 -193796118 - L1ME LINE L1 -330 5791 5726 199 283 0 17 chr1 48868487 48868547 -193795806 + L2 LINE L2 3178 3236 -36 186 238 24 0 chr1 48868591 48868633 -193795720 - L2 LINE L2 0 3272 3230 2004 89 0 0 chr1 48868655 48868914 -193795439 - AluSq SINE Alu -54 259 1 314 330 123 22 chr1 48869220 48869399 -193794954 + MIR SINE MIR 14 210 -52 181 253 101 20 chr1 48869404 48869503 -193794850 + L2 LINE L2 3160 3266 -6 263 414 6 13 chr1 48870129 48870286 -193794067 - MIR3 SINE MIR -45 163 8 262 267 44 53 chr1 48870368 48870512 -193793841 - MIR3 SINE MIR -23 185 40 468 323 78 5 chr1 48871273 48871488 -193792865 + MIR SINE MIR 34 261 -1 241 309 204 6 chr1 48872133 48872295 -193792058 + L2 LINE L2 2564 2757 -557 323 325 67 29 chr1 48872336 48872545 -193791808 + MIR SINE MIR 46 262 0 186 247 54 75 chr1 48872549 48872642 -193791711 + L2 LINE L2 2763 2853 -461 391 156 8 148 chr1 48872665 48872787 -193791566 - Zaphod DNA AcHobo -7 4024 3920 1635 162 0 7 chr1 48872788 48873060 -193791293 + AluJb SINE Alu 28 297 -15 615 247 0 0 chr1 48873068 48873425 -193790928 + (TA)n Simple_repeat Simple_repeat 1 357 0 258 183 43 97 chr1 48873425 48873518 -193790835 - MER115 DNA AcHobo -141 552 465 1107 152 0 76 chr1 48873566 48873776 -193790577 + AluJb SINE Alu 105 298 -14 474 267 121 43 chr1 48873780 48874106 -193790247 - MER115 DNA AcHobo -309 384 3 238 231 31 15 chr1 48874469 48874534 -193789819 - MIR SINE MIR -93 169 104 413 312 76 47 chr1 48874856 48875171 -193789182 - L1MC/D LINE L1 -939 5420 5258 278 282 218 0 chr1 48875659 48875769 -193788584 + MIR3 SINE MIR 3 136 -72 214 294 128 20 chr1 48875771 48875873 -193788480 - L2 LINE L2 -18 3295 3183 256 314 59 63 chr1 48875934 48875987 -193788366 - L2 LINE L2 -424 2890 2838 2240 106 3 17 chr1 48875987 48876289 -193788064 + AluSx SINE Alu 1 298 -14 256 314 59 63 chr1 48876289 48876371 -193787982 - L2 LINE L2 -476 2838 2757 762 195 54 32 chr1 48876371 48876556 -193787797 - MER5A DNA MER1_type 0 189 1 256 314 59 63 chr1 48876556 48876811 -193787542 - L2 LINE L2 -557 2757 2437 234 333 0 0 chr1 48876828 48876888 -193787465 + L2 LINE L2 3203 3262 -10 217 303 192 40 chr1 48876877 48877454 -193786899 - L2 LINE L2 -1346 1968 1304 * 278 319 11 0 chr1 48877765 48877859 -193786494 + MIR SINE MIR 147 241 -21 747 209 36 7 chr1 48877966 48878135 -193786218 + MIR SINE MIR 37 208 -54 624 210 0 7 chr1 48878238 48878520 -193785833 + GA-rich Low_complexity Low_complexity 1 279 0 455 235 0 6 chr1 48878540 48878702 -193785651 + GA-rich Low_complexity Low_complexity 3 163 0 291 352 56 28 chr1 48879455 48879668 -193784685 - MIR SINE MIR -43 219 1 188 65 0 32 chr1 48879945 48879976 -193784377 + (GGA)n Simple_repeat Simple_repeat 3 32 0 582 316 105 25 chr1 48880288 48880611 -193783742 + L2 LINE L2 2924 3272 0 354 346 160 0 chr1 48885921 48886109 -193778244 + MIR SINE MIR 1 218 -44 410 339 48 35 chr1 48886111 48886427 -193777926 + L1ME3 LINE L1 5549 5868 -302 197 81 0 54 chr1 48886444 48886481 -193777872 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chr1 48886523 48886549 -193777804 + AT_rich Low_complexity Low_complexity 1 26 0 1916 148 3 3 chr1 48886572 48886855 -193777498 + AluJb SINE Alu 3 285 -27 305 314 100 52 chr1 48886857 48887086 -193777267 + L1ME3 LINE L1 5922 6161 -1 195 288 225 21 chr1 48887114 48887305 -193777048 - L2 LINE L2 -1343 1971 1742 521 304 61 6 chr1 48887781 48887962 -193776391 - MIR SINE MIR -66 196 6 242 342 25 0 chr1 48888333 48888412 -193775941 + L2 LINE L2 3145 3225 -47 1587 140 87 19 chr1 48888445 48888741 -193775612 + AluJb SINE Alu 1 314 0 319 172 129 86 chr1 48890803 48890919 -193773434 - L1ME4a LINE L1 -41 6080 5960 905 162 0 0 chr1 48890967 48891103 -193773250 + AluJb SINE Alu 158 293 -19 2142 112 3 10 chr1 48891125 48891419 -193772934 + AluSx SINE Alu 1 292 -20 247 191 0 0 chr1 48891485 48891532 -193772821 - L1MC5 LINE L1 -734 7227 7181 1520 180 40 108 chr1 48891534 48891770 -193772583 - L1MC5 LINE L1 -827 7134 6951 2322 116 3 0 chr1 48891770 48892080 -193772273 - AluSq SINE Alu -2 311 1 1520 180 40 108 chr1 48892080 48892364 -193771989 - L1MC5 LINE L1 -1010 6951 6649 253 289 36 0 chr1 48892414 48892497 -193771856 - L1MC5 LINE L1 -516 7445 7360 1708 166 0 36 chr1 48892499 48892776 -193771577 - AluJo SINE Alu -45 267 1 693 168 37 104 chr1 48892946 48893243 -193771110 - L1MC5 LINE L1 -34 7927 7651 1261 189 5 0 chr1 48893243 48893449 -193770904 - AluJo SINE Alu -21 291 85 524 311 94 78 chr1 48893609 48894068 -193770285 - L1MC4a LINE L1 -1286 6522 6057 1913 221 99 42 chr1 48894073 48894134 -193770219 - L1MC4a LINE L1 -1787 6021 5965 270 0 0 0 chr1 48894134 48894164 -193770189 + (TG)n Simple_repeat Simple_repeat 2 31 0 1913 221 99 42 chr1 48894164 48894818 -193769535 - L1MC4a LINE L1 -1843 5965 5265 183 42 0 0 chr1 48895005 48895029 -193769324 + (TTG)n Simple_repeat Simple_repeat 2 25 0 264 333 47 0 chr1 48895031 48895181 -193769172 - L1MC4a LINE L1 -999 5147 4991 243 0 0 0 chr1 48896496 48896523 -193767830 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1914 108 52 37 chr1 48896848 48896969 -193767384 - L1MA5A LINE L1 -5 6292 6174 2324 101 0 3 chr1 48896969 48897267 -193767086 - AluSx SINE Alu -15 297 1 1914 108 52 37 chr1 48897267 48897470 -193766883 - L1MA5A LINE L1 -123 6174 5963 231 309 134 54 chr1 48899211 48899360 -193764993 - L2 LINE L2 -7 3306 3146 299 242 133 8 chr1 48899975 48900095 -193764258 + MLT1K LTR MaLR 88 222 -366 1880 149 0 24 chr1 48900097 48900426 -193763927 + AluJo SINE Alu 1 322 0 907 193 99 15 chr1 48900558 48900760 -193763593 + MER58A DNA MER1_type 4 222 -2 400 345 129 20 chr1 48900938 48901378 -193762975 + L2 LINE L2 2762 3259 -13 304 299 134 24 chr1 48901988 48902054 -193762299 - L2 LINE L2 -16 3256 3199 2447 96 0 0 chr1 48902054 48902356 -193761997 + AluSx SINE Alu 1 302 -10 304 299 134 24 chr1 48902356 48902416 -193761937 - L2 LINE L2 -73 3199 3116 334 271 68 17 chr1 48902450 48902568 -193761785 - MIR SINE MIR 0 262 139 247 305 165 36 chr1 48902571 48903020 -193761333 - L2 LINE L2 -1382 1932 1426 193 261 0 0 chr1 48903195 48903241 -193761112 + L2 LINE L2 3214 3259 -13 240 175 63 32 chr1 48903623 48903686 -193760667 + L2 LINE L2 2432 2496 -818 810 295 129 31 chr1 48903745 48904528 -193759825 + L2 LINE L2 2450 3307 -6 695 261 168 15 chr1 48904641 48905058 -193759295 + L2 LINE L2 2745 3206 -107 737 256 100 19 chr1 48905059 48905368 -193758985 + MLT1D LTR MaLR 104 437 -68 416 318 71 10 chr1 48905688 48905886 -193758467 + L2 LINE L2 2215 2424 -890 246 278 159 48 chr1 48906399 48906525 -193757828 + L2 LINE L2 3133 3272 0 1856 168 16 10 chr1 48907098 48907438 -193756915 + AluJb SINE Alu 1 312 0 2037 108 85 23 chr1 48907528 48907881 -193756472 - THE1C LTR MaLR 0 375 1 2445 251 105 66 chr1 48907921 48909015 -193755338 + L2 LINE L2 734 1870 -1444 195 162 0 0 chr1 48909370 48909407 -193754946 + C-rich Low_complexity Low_complexity 1 37 0 1761 171 23 3 chr1 48910067 48910372 -193753981 + AluJb SINE Alu 1 311 -1 333 0 0 0 chr1 48910376 48910413 -193753940 + (GAA)n Simple_repeat Simple_repeat 2 38 0 1649 98 137 27 chr1 48910502 48910838 -193753515 - THE1C LTR MaLR 0 375 3 3905 247 170 43 chr1 48910967 48911969 -193752384 + L2 LINE L2 881 1754 -1559 533 271 23 0 chr1 48911969 48912098 -193752255 - MER94 DNA DNA -1 133 2 3905 247 170 43 chr1 48912098 48912381 -193751972 + L2 LINE L2 1754 2000 -1313 2116 140 0 19 chr1 48912381 48912711 -193751642 - AluSx SINE Alu 0 312 1 3905 247 170 43 chr1 48912711 48913594 -193750759 + L2 LINE L2 2000 3310 -3 364 235 12 0 chr1 48913591 48913676 -193750677 + MIR SINE MIR 133 218 -44 * 1747 87 5 0 chr1 48914372 48914590 -193749763 - AluSg/x SINE Alu -11 299 81 218 154 0 0 chr1 48915750 48915789 -193748564 - MIR SINE MIR -125 137 99 587 193 47 20 chr1 48915837 48915955 -193748398 - MER5C DNA MER1_type -5 319 206 2262 97 0 0 chr1 48915955 48916233 -193748120 + AluSx SINE Alu 1 278 -34 1216 69 6 6 chr1 48916233 48916406 -193747947 + (GGAA)n Simple_repeat Simple_repeat 4 176 0 587 193 47 20 chr1 48916406 48916436 -193747917 - MER5C DNA MER1_type -117 207 166 269 224 17 0 chr1 48916469 48916527 -193747826 - AluYb8 SINE Alu -133 175 117 197 203 78 16 chr1 48916527 48916591 -193747762 - MER5C DNA MER1_type -177 147 80 377 245 203 28 chr1 48917413 48917556 -193746797 + MIR SINE MIR 15 182 -80 3088 142 33 70 chr1 48917558 48918233 -193746120 + Ricksha DNA DNA 2596 3181 -79 2274 111 0 16 chr1 48918233 48918549 -193745804 - AluSx SINE Alu -1 311 1 3088 142 33 70 chr1 48918549 48918614 -193745739 + Ricksha DNA DNA 3181 3247 -13 207 176 0 0 chr1 48918650 48918684 -193745669 + L2 LINE L2 3261 3294 -19 325 316 26 9 chr1 48918694 48918808 -193745545 + L2 LINE L2 3159 3274 -39 1002 291 143 39 chr1 48918830 48919662 -193744691 - L2 LINE L2 -612 2702 1784 386 298 97 0 chr1 48920107 48920231 -193744122 - HERVL LTR ERVL -850 4804 4669 689 145 52 93 chr1 48920232 48920404 -193743949 - MER20 DNA MER1_type 0 219 55 2193 137 0 3 chr1 48920406 48920712 -193743641 - AluSq SINE Alu -8 305 1 2242 96 7 7 chr1 48920712 48921003 -193743350 - AluSg SINE Alu -19 291 1 351 175 0 0 chr1 48921061 48921118 -193743235 - MER20 DNA MER1_type -159 60 4 1803 341 53 20 chr1 48921133 48922340 -193742013 - HERVL LTR ERVL -992 4662 3392 902 161 0 0 chr1 48922340 48922477 -193741876 - FLAM_C SINE Alu -6 137 1 787 259 67 9 chr1 48922644 48922868 -193741485 - MIR SINE MIR -25 237 1 183 80 0 0 chr1 48922916 48922941 -193741412 + (TATG)n Simple_repeat Simple_repeat 1 25 0 2023 73 0 97 chr1 48923621 48923951 -193740402 + AluSx SINE Alu 1 298 -14 291 347 0 0 chr1 48923952 48924050 -193740303 - MIR SINE MIR -7 255 158 201 289 94 25 chr1 48924274 48924433 -193739920 + L2 LINE L2 2915 3084 -188 210 256 12 37 chr1 48925495 48925577 -193738776 + CT-rich Low_complexity Low_complexity 4 83 0 240 346 0 10 chr1 48926535 48926639 -193737714 - MIR SINE MIR -71 137 35 821 293 24 28 chr1 48928084 48928337 -193736016 - MIR SINE MIR 0 262 11 564 239 168 0 chr1 48928911 48929066 -193735287 + MER5A DNA MER1_type 9 189 0 * 875 334 50 60 chr1 48929066 48929614 -193734739 + L2 LINE L2 2728 3264 -8 209 292 148 44 chr1 48929828 48930078 -193734275 - L2 LINE L2 -166 3106 2831 2152 107 3 0 chr1 48930958 48931266 -193733087 - AluSp SINE Alu -4 309 1 267 116 47 0 chr1 48931752 48931795 -193732558 - MIR SINE MIR -112 150 106 297 256 107 50 chr1 48931941 48932062 -193732291 - MIR SINE MIR -127 135 8 2387 67 3 0 chr1 48932147 48932446 -193731907 - AluSg SINE Alu -10 300 1 1547 157 46 46 chr1 48932567 48932872 -193731481 + AluJb SINE Alu 1 305 -7 604 265 196 0 chr1 48934095 48934299 -193730054 - MIR SINE MIR 0 262 19 2378 89 0 0 chr1 48934535 48934839 -193729514 + AluSp SINE Alu 1 304 -9 635 188 7 51 chr1 48935429 48935567 -193728786 - FLAM_A SINE Alu -1 132 1 870 159 0 0 chr1 48935646 48935778 -193728575 - FLAM_C SINE Alu -1 132 1 1326 186 0 4 chr1 48936251 48936488 -193727865 - AluJb SINE Alu -76 236 1 289 324 46 9 chr1 48936504 48936612 -193727741 + L2 LINE L2 3200 3311 -2 397 333 40 0 chr1 48936732 48936906 -193727447 - L2 LINE L2 -2 3311 3131 27 49 0 0 chr1 48937982 48938023 -193726330 + GC_rich Low_complexity Low_complexity 1 41 0 531 0 0 0 chr1 48940680 48940739 -193723614 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 513 196 78 0 chr1 48940739 48940841 -193723512 - FLAM_A SINE Alu -32 110 1 565 283 9 87 chr1 48941025 48941255 -193723098 - L2 LINE L2 -34 3238 3027 936 172 65 51 chr1 48941514 48941729 -193722624 - MER58A DNA MER1_type -6 218 1 457 257 20 72 chr1 48941747 48941812 -193722541 - L2 LINE L2 -557 2757 2690 2214 101 3 0 chr1 48941812 48942108 -193722245 + AluSx SINE Alu 1 297 -15 457 257 20 72 chr1 48942108 48942194 -193722159 - L2 LINE L2 -624 2690 2614 559 193 109 0 chr1 48942260 48942379 -193721974 + FLAM_C SINE Alu 2 133 -10 2242 105 0 0 chr1 48942583 48942879 -193721474 + AluSx SINE Alu 1 296 -16 452 197 172 0 chr1 48943312 48943434 -193720919 + MIR SINE MIR 82 224 -38 24 32 0 0 chr1 48943455 48943486 -193720867 + AT_rich Low_complexity Low_complexity 1 31 0 2078 103 3 29 chr1 48943684 48943996 -193720357 + AluSx SINE Alu 1 304 -8 367 276 18 49 chr1 48944119 48944322 -193720031 - MIR SINE MIR -12 250 59 213 197 0 0 chr1 48944870 48944931 -193719422 + CT-rich Low_complexity Low_complexity 2 62 0 432 261 87 0 chr1 48945076 48945191 -193719162 - L2 LINE L2 0 3272 3148 243 0 0 0 chr1 48945238 48945265 -193719088 + (CA)n Simple_repeat Simple_repeat 2 28 0 274 362 43 0 chr1 48945542 48945680 -193718673 - L2 LINE L2 -212 3060 2917 23 33 0 0 chr1 48945847 48945877 -193718476 + AT_rich Low_complexity Low_complexity 1 30 0 275 308 77 8 chr1 48946086 48946216 -193718137 + MIR SINE MIR 118 256 -6 268 240 124 16 chr1 48946236 48946357 -193717996 - MIR SINE MIR 0 262 129 259 292 143 13 chr1 48947228 48947382 -193716971 + MIR3 SINE MIR 22 195 -13 1761 140 18 4 chr1 48948865 48949189 -193715164 - AluSx SINE Alu 0 328 1 2950 179 92 7 chr1 48949266 48949876 -193714477 - L1MC4 LINE L1 -141 7901 7240 2145 184 161 20 chr1 48949879 48950137 -193714216 - L1MC4 LINE L1 -962 7080 6860 1663 161 0 54 chr1 48950137 48950287 -193714066 + AluJo SINE Alu 1 127 -185 414 0 0 0 chr1 48950287 48950333 -193714020 + (TA)n Simple_repeat Simple_repeat 2 47 0 1663 161 0 54 chr1 48950333 48950498 -193713855 + AluJo SINE Alu 127 299 -13 2145 184 161 20 chr1 48950498 48950784 -193713569 - L1MC4 LINE L1 -1182 6860 6459 261 0 0 0 chr1 48951226 48951255 -193713098 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1717 144 4 11 chr1 48951263 48951540 -193712813 - AluJo SINE Alu -37 275 1 511 212 75 55 chr1 48951778 48951924 -193712429 - MIR SINE MIR 0 262 114 1598 94 0 55 chr1 48952028 48952284 -193712069 + AluSc SINE Alu 53 294 -15 22 56 0 0 chr1 48953017 48953053 -193711300 + AT_rich Low_complexity Low_complexity 1 36 0 2049 125 23 0 chr1 48953087 48953392 -193710961 - AluSx SINE Alu 0 312 1 2174 93 3 16 chr1 48954216 48954527 -193709826 + AluSg SINE Alu 1 307 -3 627 102 31 20 chr1 48954548 48954646 -193709707 - U6 snRNA snRNA -2 105 7 2298 100 3 0 chr1 48955487 48955798 -193708555 + AluSx SINE Alu 1 312 0 1538 257 61 20 chr1 48955860 48956269 -193708084 + LTR16A LTR ERVL 25 450 0 1899 106 19 162 chr1 48956292 48956718 -193707635 + MLT1A1 LTR MaLR 1 365 0 932 236 33 97 chr1 48956718 48957180 -193707173 - L2 LINE L2 -93 3220 2802 2234 83 7 0 chr1 48957180 48957481 -193706872 - AluSp SINE Alu -10 303 1 932 236 33 97 chr1 48957481 48957507 -193706846 - L2 LINE L2 -511 2802 2776 341 278 12 116 chr1 48957564 48957737 -193706616 + L2 LINE L2 3030 3184 -88 1992 118 0 35 chr1 48958147 48958462 -193705891 - AluSq SINE Alu -9 304 1 27 29 0 0 chr1 48958876 48958910 -193705443 + AT_rich Low_complexity Low_complexity 1 34 0 270 180 0 0 chr1 48959300 48959361 -193704992 + (TG)n Simple_repeat Simple_repeat 2 62 0 288 154 0 0 chr1 48959514 48959566 -193704787 + (CCG)n Simple_repeat Simple_repeat 1 52 0 1114 217 186 39 chr1 48960830 48960918 -193703435 - Charlie7 DNA MER1_type -2093 519 445 2354 68 0 3 chr1 48960918 48961213 -193703140 - AluSq SINE Alu -16 297 4 1114 217 186 39 chr1 48961213 48961539 -193702814 - Charlie7 DNA MER1_type -2167 445 44 873 280 98 0 chr1 48962555 48962791 -193701562 - MIR SINE MIR 0 262 4 1422 18 0 0 chr1 48962834 48962997 -193701356 + L1PA2 LINE L1 5993 6155 0 286 306 45 22 chr1 48965565 48965699 -193698654 - MIR SINE MIR -7 255 119 1096 130 0 0 chr1 48965803 48965965 -193698388 - AluY SINE Alu -145 166 5 1126 242 86 45 chr1 48965969 48966129 -193698224 + HAL1b LINE L1 191 343 -1005 2400 45 3 0 chr1 48966129 48966439 -193697914 + L1PA3 LINE L1 5849 6159 0 1126 242 86 45 chr1 48966439 48966719 -193697634 + HAL1b LINE L1 343 650 -698 370 266 37 9 chr1 48966743 48966852 -193697501 + HAL1b LINE L1 438 549 -799 328 280 32 0 chr1 48966863 48966956 -193697397 - L1ME LINE L1 -550 5571 5476 1309 172 133 53 chr1 48966981 48967319 -193697034 + MLT1A1 LTR MaLR 1 365 0 691 282 106 41 chr1 48967333 48967777 -193696576 - L1ME LINE L1 -748 5398 5004 222 259 56 0 chr1 48968597 48968651 -193695702 - L2 LINE L2 -653 2661 2605 22 0 0 0 chr1 48968931 48968953 -193695400 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr1 48969206 48969233 -193695120 + (A)n Simple_repeat Simple_repeat 1 27 0 1884 143 13 0 chr1 48969309 48969617 -193694736 - AluJo SINE Alu 0 312 1 332 310 103 67 chr1 48969631 48969863 -193694490 - L1MEc LINE L1 -1202 1305 1050 1690 111 0 0 chr1 48969863 48970098 -193694255 - AluSx SINE Alu -77 235 1 332 310 103 67 chr1 48970098 48970281 -193694072 - L1MEc LINE L1 -1457 1050 875 636 285 36 40 chr1 48970593 48970870 -193693483 + L2 LINE L2 3021 3296 -17 441 272 82 64 chr1 48970870 48970947 -193693406 - L1ME LINE L1 -382 5739 5665 1290 51 0 0 chr1 48970947 48971105 -193693248 - L1PA8 LINE L1 -14 6158 6001 441 272 82 64 chr1 48971105 48971330 -193693023 - L1ME LINE L1 -456 5665 5434 302 264 151 48 chr1 48971339 48971802 -193692551 - L1ME LINE L1 -755 5391 4881 247 276 66 0 chr1 48971803 48971879 -193692474 - MIR SINE MIR -10 252 172 2863 169 24 4 chr1 48971954 48972422 -193691931 - MLT2B2 LTR ERVL -38 477 1 181 182 236 0 chr1 48972491 48972546 -193691807 + L2 LINE L2 3241 3308 -5 853 313 163 19 chr1 48972551 48973771 -193690582 - L2 LINE L2 -703 2611 296 2235 100 28 0 chr1 48973894 48974185 -193690168 + AluSp SINE Alu 3 301 -12 711 314 158 48 chr1 48974201 48975194 -193689159 - L2 LINE L2 -819 2495 1394 572 271 138 0 chr1 48975576 48975794 -193688559 - MIR SINE MIR -12 250 3 2360 26 0 0 chr1 48975951 48976247 -193688106 + L1PA3 LINE L1 5871 6166 0 370 181 202 0 chr1 48977154 48977248 -193687105 - L2 LINE L2 -1 3271 3159 185 384 9 0 chr1 48977459 48977571 -193686782 + L2 LINE L2 2632 2744 -570 230 291 86 34 chr1 48977571 48977688 -193686665 - L2 LINE L2 0 3272 3150 213 246 46 15 chr1 48977928 48977993 -193686360 - L2 LINE L2 -220 3052 2986 282 333 52 0 chr1 48978448 48978544 -193685809 + L2 LINE L2 2929 3029 -243 308 296 185 0 chr1 48978748 48978856 -193685497 + L2 LINE L2 3137 3264 -8 561 297 59 9 chr1 48979424 48979643 -193684710 - L1ME4a LINE L1 -86 6035 5806 568 306 73 21 chr1 48980282 48980612 -193683741 + L2 LINE L2 2508 2854 -460 181 216 118 0 chr1 48980661 48980712 -193683641 + L2 LINE L2 3216 3272 0 413 306 0 8 chr1 48980729 48980863 -193683490 - MER94 DNA DNA 0 134 2 208 179 0 0 chr1 48980901 48980940 -193683413 + L2 LINE L2 3179 3217 -96 228 405 0 0 chr1 48980992 48981066 -193683287 - L2 LINE L2 -56 3216 3143 2055 128 34 0 chr1 48981154 48981452 -193682901 + AluSx SINE Alu 1 308 -4 1789 74 66 4 chr1 48981821 48982065 -193682288 - AluSg SINE Alu -11 299 41 21 0 0 0 chr1 48983380 48983401 -193680952 + GC_rich Low_complexity Low_complexity 1 21 0 203 200 0 0 chr1 48985338 48985373 -193678980 + A-rich Low_complexity Low_complexity 1 35 0 209 328 0 0 chr1 48987380 48987441 -193676912 + CT-rich Low_complexity Low_complexity 5 65 0 180 0 0 0 chr1 48990969 48990989 -193673364 + (CA)n Simple_repeat Simple_repeat 2 21 0 24 67 0 0 chr1 48991068 48991113 -193673240 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 48994983 48995005 -193669348 + AT_rich Low_complexity Low_complexity 1 22 0 624 261 113 17 chr1 48996103 48996341 -193668012 + MIR SINE MIR 2 262 0 1042 129 43 59 chr1 48997776 48997962 -193666391 + AluJb SINE Alu 109 291 -21 5722 172 177 44 chr1 48997981 48999428 -193664925 + L1M4c LINE L1 26 1664 -4720 810 182 0 0 chr1 48999428 48999560 -193664793 + FLAM_C SINE Alu 1 132 -1 3030 184 31 40 chr1 48999560 48999798 -193664555 + L1M4c LINE L1 1815 2054 -4328 2109 115 14 0 chr1 48999798 49000099 -193664254 + AluSx SINE Alu 1 305 0 3030 184 31 40 chr1 49000099 49000738 -193663615 + L1M4c LINE L1 2054 2697 -3685 2112 117 3 31 chr1 49000738 49001055 -193663298 + AluSx SINE Alu 1 308 -4 3030 184 31 40 chr1 49001055 49001602 -193662751 + L1M4c LINE L1 2697 3314 -3068 1680 172 38 3 chr1 49001602 49001893 -193662460 + AluJb SINE Alu 1 301 -11 3030 184 31 40 chr1 49001893 49002006 -193662347 + L1M4c LINE L1 3314 3427 -2955 648 244 31 4 chr1 49001977 49002202 -193662151 + L1 LINE L1 3264 3494 -2888 * 1123 171 86 117 chr1 49002153 49002402 -193661951 - L1MD3 LINE L1 -140 7855 7621 2233 109 0 7 chr1 49002402 49002695 -193661658 - AluSx SINE Alu -21 291 1 1123 171 86 117 chr1 49002695 49002831 -193661522 - L1MD3 LINE L1 -374 7621 7482 458 241 27 0 chr1 49003420 49003532 -193660821 + FLAM_A SINE Alu 8 122 -20 2236 93 0 0 chr1 49003573 49003876 -193660477 + AluSc SINE Alu 1 303 0 592 202 0 40 chr1 49003899 49004023 -193660330 - FLAM_C SINE Alu -23 120 2 1842 150 0 35 chr1 49004097 49004410 -193659943 + AluJo SINE Alu 1 302 -10 2213 109 10 3 chr1 49004602 49004896 -193659457 - AluSx SINE Alu -16 296 1 265 259 0 0 chr1 49004901 49004959 -193659394 + MER5A DNA MER1_type 120 177 -12 1704 119 100 11 chr1 49004979 49005276 -193659077 - AluSx SINE Alu 0 320 1 2231 125 0 10 chr1 49005391 49005703 -193658650 - AluSx SINE Alu 0 312 4 468 224 80 16 chr1 49006821 49006946 -193657407 + FLAM_C SINE Alu 1 133 0 669 118 0 0 chr1 49007566 49007659 -193656694 + HY4 scRNA scRNA 1 93 0 1555 43 7 164 chr1 49007753 49008033 -193656320 + L1PA5 LINE L1 5918 6153 -1 30 0 0 0 chr1 49008035 49008065 -193656288 + AT_rich Low_complexity Low_complexity 1 30 0 1615 184 23 7 chr1 49008382 49008687 -193655666 + AluJo SINE Alu 1 310 -2 753 175 0 0 chr1 49010261 49010387 -193653966 + FLAM_C SINE Alu 2 127 -6 1900 129 18 0 chr1 49010586 49010858 -193653495 + AluSx SINE Alu 1 277 -35 1195 115 165 0 chr1 49010859 49011059 -193653294 + AluSp SINE Alu 74 306 -7 3320 223 59 18 chr1 49011060 49011339 -193653014 + L1 LINE L1 2838 3104 -3042 1557 168 32 48 chr1 49011339 49011649 -193652704 + AluJo SINE Alu 1 305 -7 3320 223 59 18 chr1 49011649 49012329 -193652024 + L1 LINE L1 3104 3837 -2309 501 129 0 35 chr1 49012331 49012416 -193651937 - Tigger2 DNA MER2_type -2633 85 4 1881 133 35 63 chr1 49012418 49012815 -193651538 + L1MB3 LINE L1 5781 6166 -17 500 207 8 33 chr1 49012918 49013039 -193651314 + FLAM_A SINE Alu 18 135 -7 1834 145 0 38 chr1 49013361 49013651 -193650702 + AluSx SINE Alu 1 279 -33 219 36 0 0 chr1 49013651 49013679 -193650674 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 341 333 75 5 chr1 49014436 49014622 -193649731 - MIR SINE MIR -50 212 14 236 30 30 0 chr1 49014776 49014809 -193649544 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 396 138 46 0 chr1 49014868 49014955 -193649398 + CT-rich Low_complexity Low_complexity 2 92 0 442 174 0 0 chr1 49015000 49015069 -193649284 - AluJo SINE Alu -11 291 223 955 158 0 0 chr1 49015070 49015209 -193649144 - AluJo SINE Alu -173 139 1 2032 121 4 4 chr1 49015339 49015650 -193648703 - AluSx SINE Alu 0 311 1 604 65 0 0 chr1 49015819 49015896 -193648457 - Alu SINE Alu -14 297 221 741 188 7 29 chr1 49016107 49016245 -193648108 + AluJo SINE Alu 2 136 -176 2093 113 0 14 chr1 49016245 49016536 -193647817 + AluSx SINE Alu 1 287 -25 232 277 255 0 chr1 49016733 49016827 -193647526 - L1ME LINE L1 -383 5738 5621 285 318 87 0 chr1 49017169 49017295 -193647058 - L1ME LINE L1 -1998 4148 4012 1947 129 18 0 chr1 49017312 49017614 -193646739 - AluSx SINE Alu 0 307 1 753 175 0 0 chr1 49017813 49017939 -193646414 - FLAM_C SINE Alu -6 127 2 1615 184 23 7 chr1 49019513 49019818 -193644535 - AluJo SINE Alu -2 310 1 30 0 0 0 chr1 49020135 49020165 -193644188 + AT_rich Low_complexity Low_complexity 1 30 0 1555 43 7 164 chr1 49020167 49020447 -193643906 - L1PA5 LINE L1 -1 6153 5918 669 118 0 0 chr1 49020541 49020634 -193643719 - HY4 scRNA scRNA 0 93 1 468 224 80 16 chr1 49021255 49021380 -193642973 - FLAM_C SINE Alu 0 133 1 2231 125 0 10 chr1 49022498 49022810 -193641543 + AluSx SINE Alu 4 312 0 1242 110 0 12 chr1 49022925 49023222 -193641131 + AluSx SINE Alu 1 295 0 284 259 0 0 chr1 49023242 49023300 -193641053 - MER5A DNA MER1_type -12 177 120 2193 109 10 3 chr1 49023305 49023599 -193640754 + AluSx SINE Alu 1 296 -16 1823 150 0 35 chr1 49023791 49024104 -193640249 - AluJo SINE Alu -10 302 1 638 202 0 40 chr1 49024178 49024302 -193640051 + FLAM_C SINE Alu 2 120 -23 2213 93 0 0 chr1 49024325 49024628 -193639725 - AluSc SINE Alu 0 303 1 503 241 27 0 chr1 49024669 49024781 -193639572 - FLAM_A SINE Alu -20 122 8 1136 171 86 117 chr1 49025370 49025506 -193638847 + L1MD3 LINE L1 7482 7621 -374 2216 109 0 7 chr1 49025506 49025799 -193638554 + AluSx SINE Alu 1 291 -21 1136 171 86 117 chr1 49025799 49026048 -193638305 + L1MD3 LINE L1 7621 7855 -140 670 244 31 4 chr1 49025999 49026224 -193638129 - L1MDa LINE L1 -2888 3652 3422 * 7561 183 183 43 chr1 49026195 49026308 -193638045 - L1 LINE L1 -2955 3427 3331 1665 172 38 3 chr1 49026308 49026599 -193637754 - AluJb SINE Alu -11 301 1 7561 183 183 43 chr1 49026599 49027146 -193637207 - L1 LINE L1 -3051 3331 2862 2099 117 3 31 chr1 49027146 49027463 -193636890 - AluSx SINE Alu -4 308 1 7561 183 183 43 chr1 49027463 49028102 -193636251 - L1 LINE L1 -3520 2862 2314 2086 115 14 0 chr1 49028102 49028403 -193635950 - AluSx SINE Alu 0 305 1 7561 183 183 43 chr1 49028403 49028641 -193635712 - L1 LINE L1 -4068 2314 2111 866 182 0 0 chr1 49028641 49028773 -193635580 - FLAM_C SINE Alu -1 132 1 7561 183 183 43 chr1 49028773 49030220 -193634133 - L1 LINE L1 -4271 2111 26 1631 160 27 37 chr1 49030239 49030533 -193633820 - AluJb SINE Alu -21 291 1 1802 165 14 7 chr1 49030615 49030900 -193633453 - AluJo SINE Alu -21 291 5 309 294 6 53 chr1 49031126 49031296 -193633057 - L1MDa LINE L1 -3932 2450 2289 1300 254 84 10 chr1 49031319 49031733 -193632620 - MLT2F LTR ERVL -17 646 202 339 227 21 62 chr1 49031743 49031840 -193632513 - MLT2F LTR ERVL -564 99 7 369 0 0 0 chr1 49031842 49031883 -193632470 + (TG)n Simple_repeat Simple_repeat 2 42 0 321 237 21 62 chr1 49031893 49031990 -193632363 - MLT2F LTR ERVL -564 99 7 23 0 0 0 chr1 49032083 49032106 -193632247 + AT_rich Low_complexity Low_complexity 1 23 0 1001 120 0 0 chr1 49032121 49032246 -193632107 - FLAM_C SINE Alu -8 125 1 2177 123 10 10 chr1 49032284 49032594 -193631759 + AluSx SINE Alu 2 311 -1 2311 79 0 13 chr1 49032807 49033122 -193631231 - AluY SINE Alu 0 311 1 286 304 133 15 chr1 49033123 49033386 -193630967 - HAL1b LINE L1 -525 823 530 10888 198 45 95 chr1 49033477 49033543 -193630810 - L1 LINE L1 -3810 3038 2970 2313 118 0 0 chr1 49033543 49033856 -193630497 - AluSq SINE Alu 0 313 1 10888 198 45 95 chr1 49033856 49033883 -193630470 - L1 LINE L1 -3878 2970 2943 2483 88 0 0 chr1 49033883 49034190 -193630163 - AluSx SINE Alu -5 307 1 10888 198 45 95 chr1 49034190 49034816 -193629537 - L1 LINE L1 -3905 2943 2287 848 155 35 52 chr1 49034816 49034990 -193629363 - FAM SINE Alu -2 47 1 10888 198 45 95 chr1 49034990 49037234 -193627119 - L1 LINE L1 -4561 2287 1 2959 215 34 81 chr1 49037561 49038413 -193625940 + MER21B LTR ERV1 1 812 -51 470 226 69 38 chr1 49039279 49039438 -193624915 - MIR SINE MIR -78 184 21 24 0 0 0 chr1 49039900 49039924 -193624429 + AT_rich Low_complexity Low_complexity 1 24 0 412 262 28 62 chr1 49039991 49040281 -193624072 - L1MC5 LINE L1 -36 7925 7646 1887 126 6 44 chr1 49040281 49040637 -193623716 - MER4A LTR ERV1 0 664 264 654 131 0 10 chr1 49040640 49040739 -193623614 - MER4A LTR ERV1 -566 98 1 15684 117 61 27 chr1 49040744 49041781 -193622572 - MER4A-int LTR ERV1 -1 6597 5597 207 0 0 0 chr1 49041781 49041804 -193622549 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 15684 117 61 27 chr1 49041804 49042277 -193622076 - MER4A-int LTR ERV1 -1001 5597 5142 2346 94 0 10 chr1 49042277 49042585 -193621768 + AluSc SINE Alu 1 305 -4 15684 117 61 27 chr1 49042585 49043570 -193620783 - MER4A-int LTR ERV1 -1456 5142 4002 2214 92 31 3 chr1 49043570 49043863 -193620490 + AluSp SINE Alu 1 301 -12 15684 117 61 27 chr1 49043863 49044035 -193620318 - MER4A-int LTR ERV1 -2596 4002 3837 3113 165 81 83 chr1 49044043 49044319 -193620034 - MER4A-int LTR ERV1 -2370 4306 4031 2296 99 0 0 chr1 49044319 49044611 -193619742 + AluY SINE Alu 1 292 -19 3113 165 81 83 chr1 49044611 49045463 -193618890 - MER4A-int LTR ERV1 -2645 4031 1514 4949 143 77 37 chr1 49045468 49046198 -193618155 - MER4A-int LTR ERV1 -4293 2305 1520 2171 121 0 0 chr1 49046198 49046520 -193617833 + AluSx SINE Alu 1 322 0 4949 143 77 37 chr1 49046520 49046818 -193617535 - MER4A-int LTR ERV1 -5078 1520 1235 2400 54 7 7 chr1 49046822 49047117 -193617236 - AluY SINE Alu -14 297 3 709 34 0 11 chr1 49047139 49047227 -193617126 + LTR7 LTR ERV1 364 450 0 1691 123 114 13 chr1 49047227 49047455 -193616898 - MER4A-int LTR ERV1 -6250 348 78 2452 33 3 17 chr1 49047455 49047755 -193616598 + AluY SINE Alu 1 296 -15 1691 123 114 13 chr1 49047755 49047842 -193616511 - MER4A-int LTR ERV1 -6520 78 1 1843 132 8 41 chr1 49047844 49048199 -193616154 - MER4A LTR ERV1 0 664 263 405 157 181 0 chr1 49048199 49048282 -193616071 - MER4A LTR ERV1 -566 98 1 325 242 101 71 chr1 49048297 49048495 -193615858 - L1MC5 LINE L1 -332 7629 7426 2286 117 0 0 chr1 49048511 49048819 -193615534 - AluSx SINE Alu 0 312 5 2387 84 3 3 chr1 49049015 49049323 -193615030 - AluY SINE Alu -3 308 1 2354 56 0 3 chr1 49049632 49049940 -193614413 - AluY SINE Alu 0 307 1 1603 186 38 81 chr1 49049940 49050326 -193614027 - MER65A LTR ERV1 -19 426 60 1813 171 10 0 chr1 49050326 49050624 -193613729 - AluJo SINE Alu -11 301 1 1603 186 38 81 chr1 49050624 49050682 -193613671 - MER65A LTR ERV1 -385 60 1 35 24 0 0 chr1 49050692 49050734 -193613619 + AT_rich Low_complexity Low_complexity 1 42 0 843 144 0 8 chr1 49050739 49050857 -193613496 - FLAM_C SINE Alu -16 117 1 1602 294 47 7 chr1 49050858 49051089 -193613264 - MER65A-int LTR ERV1 -17 4854 4634 2237 62 0 49 chr1 49051089 49051394 -193612959 - AluY SINE Alu -1 310 21 1602 294 47 7 chr1 49051394 49051737 -193612616 - MER65A-int LTR ERV1 -237 4634 4257 30 0 0 0 chr1 49051737 49051767 -193612586 + AT_rich Low_complexity Low_complexity 1 30 0 1294 176 115 0 chr1 49051767 49051915 -193612438 - AluJo SINE Alu -16 296 166 204 40 0 0 chr1 49051915 49051940 -193612413 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1294 176 115 0 chr1 49051940 49052052 -193612301 - AluJo SINE Alu -146 166 6 1708 180 0 31 chr1 49052097 49052419 -193611934 - AluJo SINE Alu 0 312 1 832 259 83 98 chr1 49052419 49052937 -193611416 - MER65A-int LTR ERV1 -752 4119 3610 488 256 71 34 chr1 49053092 49053330 -193611023 - LTR49-int LTR ERV1 -1114 3822 3576 1187 157 5 20 chr1 49053340 49053544 -193610809 - AluJo SINE Alu -25 287 87 1653 162 9 64 chr1 49053579 49053906 -193610447 - AluJo SINE Alu -1 311 3 676 151 0 0 chr1 49053996 49054089 -193610264 - FLAM_C SINE Alu -25 118 26 587 268 129 14 chr1 49054098 49054424 -193609929 - LTR49-int LTR ERV1 -1515 4816 3149 1027 220 0 0 chr1 49054424 49054633 -193609720 + L1P LINE L1 2837 3045 -3101 866 218 52 0 chr1 49054645 49054819 -193609534 - AluJo SINE Alu -129 183 1 58 106 0 0 chr1 49054822 49055048 -193609305 + AT_rich Low_complexity Low_complexity 1 226 0 1509 187 47 7 chr1 49055812 49056112 -193608241 - AluJb SINE Alu 0 312 1 367 194 56 138 chr1 49056257 49056453 -193607900 - L1MC5 LINE L1 -439 7522 7343 1174 160 10 10 chr1 49056454 49056648 -193607705 - MLT2B2 LTR ERVL 0 515 322 27 29 0 0 chr1 49057065 49057099 -193607254 + AT_rich Low_complexity Low_complexity 1 34 0 1830 233 72 62 chr1 49057202 49057331 -193607022 - L1MC5 LINE L1 -1839 5969 5843 2334 104 0 0 chr1 49057331 49057630 -193606723 - AluSx SINE Alu -13 299 1 1830 233 72 62 chr1 49057630 49058157 -193606196 - L1MC5 LINE L1 -1965 5843 5307 308 326 29 14 chr1 49058442 49058580 -193605773 - L1MC5 LINE L1 -1097 5049 4910 308 176 0 0 chr1 49058580 49058631 -193605722 - MSTB LTR MaLR 0 426 376 2013 143 0 7 chr1 49058631 49058939 -193605414 - AluJb SINE Alu -6 306 1 225 250 54 0 chr1 49059019 49059075 -193605278 + MER5C DNA MER1_type 2 60 -264 459 256 80 110 chr1 49059280 49059526 -193604827 + L1M4 LINE L1 2671 2923 -3223 2464 87 0 0 chr1 49059526 49059835 -193604518 + AluSx SINE Alu 1 309 -3 2057 118 4 0 chr1 49059845 49060125 -193604228 + AluSx SINE Alu 1 281 -31 459 256 80 110 chr1 49060125 49060378 -193603975 + L1M4 LINE L1 2932 3166 -2980 2208 104 0 0 chr1 49060410 49060690 -193603663 - AluSx SINE Alu -32 280 1 234 293 0 0 chr1 49060850 49060932 -193603421 + L1P LINE L1 3362 3443 -2703 1046 233 82 38 chr1 49061025 49061343 -193603010 + MER21B LTR ERV1 408 739 -124 373 244 64 100 chr1 49061411 49061729 -193602624 + L1M4 LINE L1 4151 4479 -1667 2021 130 9 22 chr1 49061729 49062045 -193602308 + AluSx SINE Alu 1 312 0 373 244 64 100 chr1 49062045 49062121 -193602232 + L1M4 LINE L1 4479 4556 -1590 2458 53 20 10 chr1 49062121 49062423 -193601930 + AluY SINE Alu 1 305 -6 373 244 64 100 chr1 49062423 49062555 -193601798 + L1M4 LINE L1 4556 4659 -1487 1995 136 0 3 chr1 49062576 49062878 -193601475 + AluJb SINE Alu 11 311 -1 1291 179 80 91 chr1 49062883 49063288 -193601065 + MER66A LTR ERV1 97 478 0 196 100 50 0 chr1 49063442 49063482 -193600871 + (TA)n Simple_repeat Simple_repeat 1 42 0 462 100 143 10 chr1 49063530 49063760 -193600593 + AluSq SINE Alu 1 298 -15 2117 113 7 7 chr1 49064161 49064462 -193599891 + AluSq SINE Alu 1 301 -12 860 153 0 0 chr1 49064523 49064641 -193599712 - FLAM_C SINE Alu -15 118 1 655 301 89 71 chr1 49064649 49065032 -193599321 - HAL1b LINE L1 -534 814 439 2218 107 0 3 chr1 49065032 49065330 -193599023 - AluSx SINE Alu -15 297 1 655 301 89 71 chr1 49065330 49065688 -193598665 - HAL1b LINE L1 -909 439 60 2342 88 0 7 chr1 49065688 49065985 -193598368 - AluSx SINE Alu -8 304 10 1593 186 10 10 chr1 49066272 49066563 -193597790 + AluJb SINE Alu 1 291 -21 2316 99 0 0 chr1 49066841 49067133 -193597220 + AluSx SINE Alu 11 302 -10 2499 57 7 0 chr1 49067217 49067517 -193596836 - AluY SINE Alu -9 302 1 1104 282 65 3 chr1 49068046 49068355 -193595998 + LTR16A LTR ERVL 115 442 -8 482 129 24 0 chr1 49068402 49068487 -193595866 - LTR54 LTR ERV1 -17 493 407 1854 173 3 19 chr1 49068719 49069032 -193595321 + AluJo SINE Alu 1 308 -4 2446 74 3 0 chr1 49069163 49069459 -193594894 - AluSp SINE Alu -16 297 1 317 283 69 35 chr1 49069941 49070047 -193594306 - L1M4 LINE L1 -2142 4004 3888 2047 146 0 13 chr1 49070047 49070363 -193593990 - AluJb SINE Alu 0 312 1 317 283 69 35 chr1 49070363 49070429 -193593924 - L1M4 LINE L1 -2258 3888 3826 1106 269 72 69 chr1 49070453 49071082 -193593271 - L1M4 LINE L1 -1710 4436 3811 2161 135 0 0 chr1 49071082 49071378 -193592975 - AluSx SINE Alu -16 296 1 1106 269 72 69 chr1 49071378 49071424 -193592929 - L1M4 LINE L1 -2335 3811 3767 1522 180 25 14 chr1 49071424 49071708 -193592645 - AluJo SINE Alu -25 287 1 1106 269 72 69 chr1 49071708 49071855 -193592498 - L1M4 LINE L1 -2379 3767 3607 1412 163 99 21 chr1 49071855 49072137 -193592216 - AluJo SINE Alu -8 304 1 1106 269 72 69 chr1 49072137 49072187 -193592166 - L1M4 LINE L1 -2539 3607 3559 226 125 0 0 chr1 49072268 49072300 -193592053 + Charlie3 DNA MER1_type 3 34 -2676 1910 86 41 0 chr1 49072300 49072543 -193591810 + AluSq SINE Alu 31 313 0 191 0 67 0 chr1 49072543 49072573 -193591780 + (TAAAA)n Simple_repeat Simple_repeat 3 180 0 370 121 17 0 chr1 49073485 49073543 -193590810 + Tigger2 DNA MER2_type 1 59 -2659 * 636 186 0 0 chr1 49073529 49073631 -193590722 - MER8 DNA MER2_type -134 105 4 407 109 16 0 chr1 49073803 49073867 -193590486 + AluSg/x SINE Alu 213 277 -32 613 0 26 0 chr1 49073867 49073944 -193590409 + (TAAAA)n Simple_repeat Simple_repeat 1 79 0 1490 139 53 4 chr1 49074144 49074388 -193589965 + AluJo SINE Alu 50 305 -7 186 133 0 0 chr1 49074388 49074418 -193589935 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 816 178 27 110 chr1 49074422 49074625 -193589728 + L1M4 LINE L1 2505 2678 -3468 2321 90 21 0 chr1 49074625 49074914 -193589439 - AluSx SINE Alu -17 295 1 816 178 27 110 chr1 49074914 49075002 -193589351 + L1M4 LINE L1 2678 2772 -3374 1868 177 3 19 chr1 49075005 49075321 -193589032 + AluJo SINE Alu 1 311 -1 343 255 66 0 chr1 49075337 49075443 -193588910 + L1M4 LINE L1 2937 3049 -3097 1207 317 72 40 chr1 49075444 49075604 -193588749 - ERVL LTR ERVL -2258 3506 3352 1930 154 7 10 chr1 49075604 49075897 -193588456 - AluJo SINE Alu -18 294 3 1207 317 72 40 chr1 49075897 49076281 -193588072 - ERVL LTR ERVL -2412 3352 2945 1988 163 0 0 chr1 49076821 49077110 -193587243 - AluJb SINE Alu -23 289 1 2853 212 47 7 chr1 49077307 49077986 -193586367 - L1ME3 LINE L1 -2 6160 5455 971 271 73 54 chr1 49078146 49078762 -193585591 + L1M4 LINE L1 3596 4223 -1923 184 386 40 0 chr1 49078786 49078887 -193585466 + L2 LINE L2 2560 2664 -650 207 214 0 0 chr1 49078899 49078941 -193585412 + CT-rich Low_complexity Low_complexity 1 42 0 331 259 319 0 chr1 49078942 49079077 -193585276 - L1ME4a LINE L1 -3 6118 5941 471 246 121 37 chr1 49079097 49079312 -193585041 + L2 LINE L2 3045 3277 -36 213 288 34 0 chr1 49080171 49080230 -193584123 + L2 LINE L2 3233 3293 -20 295 271 133 42 chr1 49080244 49080410 -193583943 - MIR SINE MIR -3 259 79 411 333 128 32 chr1 49082219 49082655 -193581698 + L2 LINE L2 2033 2510 -804 184 264 82 110 chr1 49082665 49082847 -193581506 - L2 LINE L2 -120 3193 3017 340 280 127 0 chr1 49083213 49083331 -193581022 + L2 LINE L2 3139 3271 -1 2058 146 0 0 chr1 49083393 49083695 -193580658 - AluJb SINE Alu -10 302 1 328 280 134 43 chr1 49083741 49083973 -193580380 - L2 LINE L2 -188 3084 2832 728 216 271 0 chr1 49084186 49084441 -193579912 - MER5C DNA MER1_type 0 324 1 681 266 136 16 chr1 49084441 49084809 -193579544 - L2 LINE L2 -610 2704 2293 240 321 253 14 chr1 49090947 49091583 -193572770 + L2 LINE L2 2127 2914 -400 225 331 145 7 chr1 49091587 49091732 -193572621 + MIR SINE MIR 28 192 -70 182 321 73 46 chr1 49091977 49092086 -193572267 - MIR SINE MIR -70 138 27 716 158 72 59 chr1 49092465 49092617 -193571736 - AluSg/x SINE Alu -38 274 121 227 274 77 68 chr1 49093029 49093146 -193571207 - L2 LINE L2 0 3272 3155 328 293 83 60 chr1 49093387 49093687 -193570666 - L2 LINE L2 -455 2859 2553 405 0 0 0 chr1 49093944 49093989 -193570364 + (CA)n Simple_repeat Simple_repeat 2 46 0 336 243 89 37 chr1 49093992 49094205 -193570148 - L1 LINE L1 -1089 5057 4836 243 100 118 146 chr1 49094707 49094817 -193569536 - MER53 DNA DNA -82 107 1 569 206 42 106 chr1 49094944 49095133 -193569220 + MIR SINE MIR 48 224 -38 242 170 0 21 chr1 49097719 49097766 -193566587 - MIR SINE MIR -123 139 94 1948 115 44 21 chr1 49098116 49098454 -193565899 - MER46B DNA MER2_type -15 221 1 240 200 18 0 chr1 49098407 49098462 -193565891 + MER46A DNA MER2_type 97 152 -84 * 1381 188 105 0 chr1 49098554 49098820 -193565533 - AluJo SINE Alu -18 294 1 1519 261 72 9 chr1 49098899 49099355 -193564998 + MLT1L LTR MaLR 131 615 0 960 236 5 124 chr1 49099681 49100075 -193564278 - MLT1J LTR MaLR -128 383 37 601 269 130 34 chr1 49100121 49100444 -193563909 + L2 LINE L2 1017 1370 -1944 1350 94 0 0 chr1 49100577 49100747 -193563606 - AluSg/x SINE Alu -11 301 132 528 309 163 21 chr1 49100758 49101377 -193562976 + L2 LINE L2 1530 2236 -1078 250 219 311 30 chr1 49101392 49101556 -193562797 + L2 LINE L2 2533 2742 -572 2140 96 18 4 chr1 49101557 49101866 -193562487 + AluSg SINE Alu 1 313 0 280 164 0 0 chr1 49101876 49101931 -193562422 + L1MD3 LINE L1 7757 7811 -184 1031 134 7 0 chr1 49101932 49102081 -193562272 - AluSg/x SINE Alu -26 284 135 580 201 151 0 chr1 49102099 49102238 -193562115 + L1MD3 LINE L1 7828 7987 -8 626 316 64 43 chr1 49103406 49103890 -193560463 - L2 LINE L2 -4 3309 2816 193 232 36 18 chr1 49104442 49104498 -193559855 + L2 LINE L2 3214 3270 -2 217 203 0 62 chr1 49106946 49107010 -193557343 + GA-rich Low_complexity Low_complexity 3 62 0 400 330 71 9 chr1 49107653 49107877 -193556476 + MIR SINE MIR 10 247 -15 198 191 0 0 chr1 49108590 49108637 -193555716 + (CA)n Simple_repeat Simple_repeat 1 47 0 440 35 17 0 chr1 49108969 49109027 -193555326 + (CATA)n Simple_repeat Simple_repeat 4 62 0 248 218 0 13 chr1 49109039 49109117 -193555236 + (TCCA)n Simple_repeat Simple_repeat 4 80 0 750 228 67 16 chr1 49111054 49111247 -193553106 + MIR SINE MIR 10 212 -50 387 284 17 17 chr1 49111628 49111744 -193552609 + L2 LINE L2 3156 3271 -1 252 238 32 0 chr1 49113098 49113161 -193551192 + (TTCA)n Simple_repeat Simple_repeat 3 67 0 432 293 30 18 chr1 49113403 49113567 -193550786 + L2 LINE L2 2898 3063 -209 183 244 49 0 chr1 49113914 49113955 -193550398 + L2 LINE L2 3180 3222 -91 321 109 0 0 chr1 49115847 49115902 -193548451 + (TG)n Simple_repeat Simple_repeat 1 55 0 238 297 55 0 chr1 49116168 49116259 -193548094 - MIR SINE MIR -62 146 51 398 274 39 0 chr1 49120426 49120528 -193543825 + MIR SINE MIR 60 165 -97 485 260 20 47 chr1 49120680 49120962 -193543391 + MLT1F1 LTR MaLR 1 300 -289 606 220 12 46 chr1 49121024 49121197 -193543156 + MLT1F1 LTR MaLR 395 561 -6 447 350 110 12 chr1 49121308 49121871 -193542482 + L2 LINE L2 670 1287 -2027 347 294 80 106 chr1 49121860 49122159 -193542194 + L2 LINE L2 1390 1695 -1619 * 714 171 8 16 chr1 49122159 49122288 -193542065 + MIR SINE MIR 100 227 -35 347 294 80 106 chr1 49122288 49122992 -193541361 + L2 LINE L2 1695 2492 -822 274 277 13 94 chr1 49123006 49123165 -193541188 + L2 LINE L2 2914 3059 -213 546 250 31 0 chr1 49125664 49125792 -193538561 - L2 LINE L2 -2 3270 3139 220 309 93 0 chr1 49125893 49125990 -193538363 - L2 LINE L2 -1040 2274 2169 292 214 194 0 chr1 49126204 49126302 -193538051 - L2 LINE L2 0 3313 3197 204 135 0 0 chr1 49126438 49126475 -193537878 + (GCTG)n Simple_repeat Simple_repeat 4 40 0 186 310 0 28 chr1 49126578 49126649 -193537704 - L2 LINE L2 -469 2845 2777 1553 187 29 15 chr1 49126734 49126856 -193537497 + AluJb SINE Alu 1 120 -192 480 18 0 0 chr1 49126856 49126913 -193537440 + (CA)n Simple_repeat Simple_repeat 2 58 0 1553 187 29 15 chr1 49126913 49127063 -193537290 + AluJb SINE Alu 120 277 -35 528 93 0 0 chr1 49127064 49127139 -193537214 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 197 296 176 51 chr1 49127268 49127444 -193536909 - L2 LINE L2 0 3272 3075 319 197 66 0 chr1 49127824 49127900 -193536453 + MIR3 SINE MIR 112 192 -16 198 323 226 8 chr1 49127947 49128071 -193536282 + L2 LINE L2 2909 3059 -213 230 214 18 89 chr1 49128651 49128763 -193535590 + GA-rich Low_complexity Low_complexity 2 105 0 410 226 129 24 chr1 49132614 49132738 -193531615 - L2 LINE L2 0 3272 3136 1986 161 80 32 chr1 49132765 49133238 -193531115 + L1MB8 LINE L1 5677 6172 -6 312 343 36 15 chr1 49133398 49133535 -193530818 - L2 LINE L2 -211 3061 2922 545 237 15 23 chr1 49133760 49133891 -193530462 + L2 LINE L2 3184 3313 0 241 306 45 54 chr1 49133971 49134082 -193530271 + L2 LINE L2 3192 3301 -12 201 389 37 37 chr1 49135364 49135472 -193528881 + L2 LINE L2 3123 3230 -42 321 193 28 128 chr1 49136384 49136493 -193527860 - MIR3 SINE MIR -11 197 100 310 303 146 54 chr1 49136985 49137170 -193527183 + MIR SINE MIR 61 262 0 215 246 46 0 chr1 49138109 49138174 -193526179 - MIR SINE MIR -33 229 162 208 320 136 0 chr1 49138475 49138622 -193525731 + L2 LINE L2 2892 3058 -214 910 218 114 0 chr1 49138671 49138873 -193525480 + MIR SINE MIR 2 226 -36 460 267 22 44 chr1 49138882 49139017 -193525336 - MIR SINE MIR -105 157 26 577 317 24 6 chr1 49139308 49139475 -193524878 - MIR SINE MIR -72 190 21 325 295 63 11 chr1 49139502 49139597 -193524756 - MIR SINE MIR -142 120 21 1982 138 7 0 chr1 49139752 49140082 -193524271 + AluSx SINE Alu 1 332 0 354 231 68 68 chr1 49140541 49140658 -193523695 + MIR SINE MIR 19 135 -127 472 336 117 28 chr1 49140726 49141168 -193523185 - L2 LINE L2 -8 3264 2798 2186 144 62 31 chr1 49143054 49143470 -193520883 - MSTB1 LTR MaLR -3 429 1 218 295 42 11 chr1 49143548 49143643 -193520710 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 2175 307 101 22 chr1 49143646 49144937 -193519416 + L2 LINE L2 691 2082 -1232 552 296 12 24 chr1 49144952 49145121 -193519232 + MIR SINE MIR 48 214 -48 1600 146 66 30 chr1 49145123 49145394 -193518959 - Charlie5 DNA MER1_type 0 2624 2335 1944 168 10 0 chr1 49145394 49145697 -193518656 + AluSx SINE Alu 2 307 -5 1600 146 66 30 chr1 49145697 49145788 -193518565 - Charlie5 DNA MER1_type -289 2335 2249 2158 108 0 20 chr1 49145805 49146100 -193518253 - AluSx SINE Alu -23 289 1 608 200 8 0 chr1 49146108 49146238 -193518115 - MER3 DNA MER1_type -41 168 38 662 308 107 37 chr1 49146274 49146428 -193517925 + L2 LINE L2 2070 2212 -1102 2021 153 17 3 chr1 49146428 49146723 -193517630 - AluJo SINE Alu -13 299 1 662 308 107 37 chr1 49146723 49146971 -193517382 + L2 LINE L2 2212 2500 -814 302 333 0 11 chr1 49147547 49147640 -193516713 + L2 LINE L2 2535 2626 -688 324 258 89 65 chr1 49147646 49147840 -193516513 + MER20B DNA MER1_type 3 195 -24 482 270 173 58 chr1 49147866 49148092 -193516261 + L2 LINE L2 2630 2881 -433 * 557 240 25 0 chr1 49148091 49148212 -193516141 - L2 LINE L2 0 3313 3190 318 260 264 48 chr1 49148272 49148499 -193515854 + L2 LINE L2 2985 3260 -12 2035 168 0 0 chr1 49148503 49148801 -193515552 + AluJo SINE Alu 1 298 -14 203 0 37 0 chr1 49148801 49148828 -193515525 + (TA)n Simple_repeat Simple_repeat 2 29 0 411 73 0 0 chr1 49149068 49149123 -193515230 + (TG)n Simple_repeat Simple_repeat 2 56 0 354 310 124 70 chr1 49150433 49150836 -193513517 - L2 LINE L2 -6 3266 2842 244 200 0 62 chr1 49151885 49151965 -193512388 + A-rich Low_complexity Low_complexity 3 77 0 636 275 140 5 chr1 49152346 49152553 -193511800 - MIR SINE MIR -8 254 20 180 342 40 0 chr1 49153089 49153165 -193511188 - L2 LINE L2 -600 2714 2636 438 280 8 0 chr1 49153353 49153471 -193510882 - MER97c DNA MER1_type? -970 120 2 362 268 50 109 chr1 49153544 49153783 -193510570 - L2 LINE L2 -960 2354 2130 569 294 77 12 chr1 49153839 49154087 -193510266 - L3 LINE CR1 -134 1443 1180 489 329 32 36 chr1 49154299 49154518 -193509835 - L2 LINE L2 -1332 1982 1765 352 287 97 21 chr1 49155707 49155858 -193508495 - MIR3 SINE MIR -29 179 31 189 239 0 22 chr1 49157268 49157314 -193507039 + L2 LINE L2 2440 2484 -830 410 343 7 0 chr1 49160817 49160954 -193503399 - MIR SINE MIR -121 141 4 522 220 15 68 chr1 49165286 49165418 -193498935 + L2 LINE L2 3189 3313 0 1387 215 21 67 chr1 49165673 49165820 -193498533 + L1ME3 LINE L1 5743 5895 -267 1648 173 0 15 chr1 49165820 49166091 -193498262 + AluJb SINE Alu 1 267 -45 1387 215 21 67 chr1 49166091 49166375 -193497978 + L1ME3 LINE L1 5895 6154 -8 1685 178 24 34 chr1 49166375 49166673 -193497680 - AluJo SINE Alu -17 295 1 893 262 21 13 chr1 49170007 49170240 -193494113 + MIR SINE MIR 14 248 -14 345 227 13 0 chr1 49170624 49170699 -193493654 - L2 LINE L2 -2 3311 3236 1053 284 139 68 chr1 49170841 49171691 -193492662 - L2 LINE L2 -431 2883 1974 261 75 0 0 chr1 49174594 49174634 -193489719 + (CA)n Simple_repeat Simple_repeat 2 41 0 629 215 251 0 chr1 49174982 49175145 -193489208 + MIR SINE MIR 2 205 -57 1978 137 10 0 chr1 49176400 49176700 -193487653 + AluSx SINE Alu 1 303 -9 456 220 99 115 chr1 49176854 49177045 -193487308 + MIR SINE MIR 10 197 -65 380 258 156 23 chr1 49177316 49177444 -193486909 + L2 LINE L2 3168 3312 -1 477 0 0 0 chr1 49177928 49177981 -193486372 + (CA)n Simple_repeat Simple_repeat 1 53 0 211 284 47 76 chr1 49178890 49179189 -193485164 - L3 LINE CR1 -22 1555 1196 426 319 8 0 chr1 49181696 49181815 -193482538 - L2 LINE L2 -1 3312 3193 742 165 9 0 chr1 49182836 49182951 -193481402 + FLAM_C SINE Alu 2 117 -26 337 222 0 0 chr1 49183070 49183133 -193481220 - L3b LINE CR1 -200 1383 1321 207 0 0 0 chr1 49184109 49184132 -193480221 + (CA)n Simple_repeat Simple_repeat 1 23 0 471 347 184 0 chr1 49184487 49184775 -193479578 - L2 LINE L2 0 3272 2932 223 220 93 54 chr1 49185897 49186029 -193478324 + MIR SINE MIR 25 143 -65 24 0 0 0 chr1 49187775 49187799 -193476554 + AT_rich Low_complexity Low_complexity 1 24 0 202 310 84 42 chr1 49190701 49190843 -193473510 - L2 LINE L2 -3 3269 3122 198 314 81 0 chr1 49190997 49191083 -193473270 - L2 LINE L2 -12 3301 3209 640 258 112 0 chr1 49191171 49191349 -193473004 - MIR SINE MIR -12 250 53 196 255 85 57 chr1 49191597 49191703 -193472650 + L2 LINE L2 3163 3271 -1 313 310 53 26 chr1 49191768 49191881 -193472472 - MIR3 SINE MIR -87 121 6 2427 59 0 3 chr1 49191994 49192299 -193472054 - AluY SINE Alu -7 304 1 2229 84 3 3 chr1 49192593 49192892 -193471461 - AluSg SINE Alu -11 299 1 1838 136 45 0 chr1 49193180 49193466 -193470887 - AluSx SINE Alu -13 299 1 1007 251 40 0 chr1 49194935 49195186 -193469167 - MIR SINE MIR 0 262 2 764 176 13 46 chr1 49195879 49196032 -193468321 + MER5A DNA MER1_type 42 189 0 444 189 78 0 chr1 49196139 49196229 -193468124 - MER5A DNA MER1_type -83 106 10 210 284 88 20 chr1 49197498 49197600 -193466753 + L2 LINE L2 2554 2662 -652 343 294 30 99 chr1 49199387 49199588 -193464765 + L2 LINE L2 3042 3228 -44 1716 156 3 49 chr1 49202576 49202902 -193461451 + AluJb SINE Alu 2 312 0 1936 84 28 78 chr1 49202995 49203315 -193461038 + AluSp SINE Alu 1 304 -9 241 302 130 32 chr1 49203393 49203678 -193460675 - L3b LINE CR1 -168 1415 1103 670 351 88 39 chr1 49203992 49204379 -193459974 - L3 LINE CR1 -1132 445 40 2914 175 17 19 chr1 49205701 49206237 -193458116 - MLT1F LTR MaLR -7 535 1 312 91 0 0 chr1 49206858 49206902 -193457451 + (A)n Simple_repeat Simple_repeat 1 44 0 261 75 0 0 chr1 49259286 49259326 -193405027 + (CA)n Simple_repeat Simple_repeat 2 41 0 628 209 251 0 chr1 49259674 49259837 -193404516 + MIR SINE MIR 2 205 -57 2164 139 10 0 chr1 49261092 49261401 -193402952 + AluSx SINE Alu 1 312 0 2272 53 4 0 chr1 49261479 49261742 -193402611 - AluY SINE Alu -47 264 1 440 225 99 115 chr1 49261769 49261960 -193402393 + MIR SINE MIR 10 197 -65 378 258 156 23 chr1 49262231 49262359 -193401994 + L2 LINE L2 3168 3312 -1 315 0 0 0 chr1 49262843 49262878 -193401475 + (CA)n Simple_repeat Simple_repeat 1 35 0 224 284 47 76 chr1 49263787 49264086 -193400267 - L3 LINE CR1 -22 1555 1196 427 319 8 0 chr1 49266594 49266713 -193397640 - L2 LINE L2 -1 3312 3193 762 165 9 0 chr1 49267734 49267849 -193396504 + FLAM_C SINE Alu 2 117 -26 337 222 0 0 chr1 49267967 49268030 -193396323 - L3b LINE CR1 -200 1383 1321 243 0 0 0 chr1 49269006 49269033 -193395320 + (CA)n Simple_repeat Simple_repeat 1 27 0 471 347 184 0 chr1 49269388 49269676 -193394677 - L2 LINE L2 0 3272 2932 224 220 93 54 chr1 49270798 49270930 -193393423 + MIR SINE MIR 25 143 -65 24 0 0 0 chr1 49272676 49272700 -193391653 + AT_rich Low_complexity Low_complexity 1 24 0 202 310 84 42 chr1 49275049 49275191 -193389162 - L2 LINE L2 -3 3269 3122 198 314 81 0 chr1 49275345 49275431 -193388922 - L2 LINE L2 -12 3301 3209 640 258 112 0 chr1 49275519 49275697 -193388656 - MIR SINE MIR -12 250 53 196 255 85 57 chr1 49275945 49276051 -193388302 + L2 LINE L2 3163 3271 -1 313 310 53 26 chr1 49276116 49276229 -193388124 - MIR3 SINE MIR -87 121 6 2436 59 0 3 chr1 49276342 49276648 -193387705 - AluY SINE Alu -6 305 1 2226 81 3 3 chr1 49276942 49277239 -193387114 - AluSg SINE Alu -13 297 1 1838 136 45 0 chr1 49277527 49277813 -193386540 - AluSx SINE Alu -13 299 1 1007 251 40 0 chr1 49279282 49279533 -193384820 - MIR SINE MIR 0 262 2 788 170 13 46 chr1 49280226 49280379 -193383974 + MER5A DNA MER1_type 42 189 0 444 189 78 0 chr1 49280486 49280576 -193383777 - MER5A DNA MER1_type -83 106 10 210 284 88 20 chr1 49281845 49281947 -193382406 + L2 LINE L2 2554 2662 -652 343 294 30 99 chr1 49283734 49283935 -193380418 + L2 LINE L2 3042 3228 -44 1716 156 3 49 chr1 49286923 49287249 -193377104 + AluJb SINE Alu 2 312 0 1950 84 28 78 chr1 49287342 49287662 -193376691 + AluSp SINE Alu 1 304 -9 244 288 140 42 chr1 49287740 49288025 -193376328 - L3b LINE CR1 -168 1415 1103 685 355 88 36 chr1 49288339 49288725 -193375628 - L3 LINE CR1 -1132 445 40 2896 177 17 19 chr1 49290047 49290583 -193373770 - MLT1F LTR MaLR -7 535 1 312 91 0 0 chr1 49291204 49291248 -193373105 + (A)n Simple_repeat Simple_repeat 1 44 0 752 217 113 35 chr1 49293015 49293230 -193371123 + MIR SINE MIR 37 262 0 1717 144 4 11 chr1 49293468 49293745 -193370608 + AluJo SINE Alu 1 275 -37 261 0 0 0 chr1 49293753 49293782 -193370571 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2145 184 161 20 chr1 49294224 49294510 -193369843 + L1MC4 LINE L1 6459 6703 -1339 1681 167 0 39 chr1 49294510 49294676 -193369677 - AluJo SINE Alu -12 300 150 342 0 0 0 chr1 49294676 49294714 -193369639 + (TA)n Simple_repeat Simple_repeat 2 39 0 1681 167 0 39 chr1 49294714 49294859 -193369494 - AluJo SINE Alu -162 150 1 2145 184 161 20 chr1 49294859 49295117 -193369236 + L1MC4 LINE L1 6703 7080 -962 2994 175 92 7 chr1 49295120 49295730 -193368623 + L1MC4 LINE L1 7240 7901 -141 1797 141 18 0 chr1 49295807 49296130 -193368223 + AluSx SINE Alu 1 328 0 259 292 143 13 chr1 49297613 49297767 -193366586 - MIR3 SINE MIR -13 195 22 268 240 124 16 chr1 49298638 49298759 -193365594 + MIR SINE MIR 129 262 0 275 308 77 8 chr1 49298779 49298909 -193365444 - MIR SINE MIR -6 256 118 23 33 0 0 chr1 49299118 49299148 -193365205 + AT_rich Low_complexity Low_complexity 1 30 0 274 362 43 0 chr1 49299315 49299453 -193364900 + L2 LINE L2 2917 3060 -212 261 0 0 0 chr1 49299729 49299758 -193364595 + (TG)n Simple_repeat Simple_repeat 2 30 0 432 261 87 0 chr1 49299805 49299920 -193364433 + L2 LINE L2 3148 3272 0 213 197 0 0 chr1 49300065 49300126 -193364227 + GA-rich Low_complexity Low_complexity 2 62 0 367 276 18 49 chr1 49300674 49300877 -193363476 + MIR SINE MIR 59 250 -12 2078 103 3 29 chr1 49301000 49301312 -193363041 - AluSx SINE Alu -8 304 1 24 32 0 0 chr1 49301510 49301541 -193362812 + AT_rich Low_complexity Low_complexity 1 31 0 452 197 172 0 chr1 49301562 49301684 -193362669 - MIR SINE MIR -38 224 82 2242 105 0 0 chr1 49302117 49302413 -193361940 - AluSx SINE Alu -16 296 1 559 193 109 0 chr1 49302617 49302736 -193361617 - FLAM_C SINE Alu -10 133 2 457 257 20 72 chr1 49302802 49302888 -193361465 + L2 LINE L2 2614 2690 -624 2214 101 3 0 chr1 49302888 49303184 -193361169 - AluSx SINE Alu -15 297 1 457 257 20 72 chr1 49303184 49303249 -193361104 + L2 LINE L2 2690 2757 -557 936 172 65 51 chr1 49303267 49303482 -193360871 + MER58A DNA MER1_type 1 218 -6 565 283 9 87 chr1 49303741 49303971 -193360382 + L2 LINE L2 3027 3238 -34 513 196 78 0 chr1 49304155 49304257 -193360096 + FLAM_A SINE Alu 1 110 -32 429 20 0 0 chr1 49304257 49304307 -193360046 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 27 49 0 0 chr1 49306959 49307000 -193357353 + GC_rich Low_complexity Low_complexity 1 41 0 397 333 40 0 chr1 49308076 49308250 -193356103 + L2 LINE L2 3131 3311 -2 289 324 46 9 chr1 49308370 49308478 -193355875 - L2 LINE L2 -2 3311 3200 1326 186 0 4 chr1 49308494 49308731 -193355622 + AluJb SINE Alu 1 236 -76 870 159 0 0 chr1 49309204 49309336 -193355017 + FLAM_C SINE Alu 1 132 -1 635 188 7 51 chr1 49309415 49309553 -193354800 + FLAM_A SINE Alu 1 132 -1 2378 89 0 0 chr1 49310143 49310447 -193353906 - AluSp SINE Alu -9 304 1 604 265 196 0 chr1 49310683 49310887 -193353466 + MIR SINE MIR 19 262 0 1566 161 43 43 chr1 49312110 49312415 -193351938 - AluJb SINE Alu -7 305 1 2395 67 3 0 chr1 49312536 49312836 -193351517 + AluSg SINE Alu 1 301 -9 297 256 107 50 chr1 49312921 49313042 -193351311 + MIR SINE MIR 8 135 -127 267 116 47 0 chr1 49313188 49313231 -193351122 + MIR SINE MIR 106 150 -112 2159 107 3 0 chr1 49313717 49314025 -193350328 + AluSp SINE Alu 1 309 -4 209 292 148 44 chr1 49314905 49315155 -193349198 + L2 LINE L2 2831 3106 -166 906 337 51 56 chr1 49315363 49315915 -193348438 - L2 LINE L2 -1 3271 2728 564 239 168 0 chr1 49315915 49316070 -193348283 - MER5A DNA MER1_type 0 189 9 953 296 28 8 chr1 49316644 49316891 -193347462 + MIR SINE MIR 11 262 0 240 346 0 10 chr1 49318336 49318440 -193345913 + MIR SINE MIR 35 137 -71 210 256 12 37 chr1 49319398 49319480 -193344873 + GA-rich Low_complexity Low_complexity 4 83 0 201 289 94 25 chr1 49320542 49320701 -193343652 - L2 LINE L2 -188 3084 2915 291 347 0 0 chr1 49320925 49321023 -193343330 + MIR SINE MIR 158 255 -7 2042 70 0 94 chr1 49321024 49321353 -193343000 - AluSx SINE Alu -14 298 1 183 80 0 0 chr1 49322033 49322058 -193342295 + (CATA)n Simple_repeat Simple_repeat 1 25 0 787 259 67 9 chr1 49322106 49322330 -193342023 + MIR SINE MIR 1 237 -25 834 145 23 0 chr1 49322497 49322628 -193341725 + AluJo SINE Alu 1 134 -178 1964 339 53 20 chr1 49322632 49323841 -193340512 + HERVL LTR ERVL 3390 4662 -992 372 175 0 0 chr1 49323856 49323913 -193340440 + MER20 DNA MER1_type 4 60 -159 2100 96 7 7 chr1 49323971 49324262 -193340091 + AluSg SINE Alu 1 291 -19 2015 141 0 3 chr1 49324262 49324568 -193339785 + AluSq SINE Alu 1 305 -8 750 145 52 93 chr1 49324570 49324742 -193339611 + MER20 DNA MER1_type 55 219 0 417 298 97 0 chr1 49324743 49324867 -193339486 + HERVL LTR ERVL 4669 4804 -850 2302 97 3 0 chr1 49325482 49325791 -193338562 + AluSx SINE Alu 1 310 -2 1561 254 61 20 chr1 49325856 49326265 -193338088 + LTR16A LTR ERVL 25 450 0 1899 106 19 162 chr1 49326288 49326714 -193337639 + MLT1A1 LTR MaLR 1 365 0 932 236 33 97 chr1 49326714 49327176 -193337177 - L2 LINE L2 -93 3220 2802 2234 83 7 0 chr1 49327176 49327477 -193336876 - AluSp SINE Alu -10 303 1 932 236 33 97 chr1 49327477 49327503 -193336850 - L2 LINE L2 -511 2802 2776 341 278 12 116 chr1 49327560 49327733 -193336620 + L2 LINE L2 3030 3184 -88 1969 121 0 35 chr1 49328143 49328458 -193335895 - AluSq SINE Alu -9 304 1 205 241 35 0 chr1 49328687 49328745 -193335608 + L2 LINE L2 3246 3305 -8 767 311 24 12 chr1 49328785 49329036 -193335317 + MIR SINE MIR 2 255 -7 1422 18 0 0 chr1 49331604 49331767 -193332586 - L1PA2 LINE L1 0 6155 5993 873 280 98 0 chr1 49331810 49332046 -193332307 + MIR SINE MIR 4 262 0 1790 214 151 30 chr1 49333062 49333388 -193330965 + Charlie7 DNA MER1_type 44 329 -2283 2354 68 0 3 chr1 49333388 49333683 -193330670 + AluSq SINE Alu 4 297 -16 1790 214 151 30 chr1 49333683 49333931 -193330422 + Charlie7 DNA MER1_type 329 688 -1924 386 185 118 25 chr1 49333900 49334019 -193330334 + Charlie7 DNA MER1_type 2482 2611 -1 * 22 0 0 0 chr1 49334236 49334258 -193330095 + AT_rich Low_complexity Low_complexity 1 22 0 222 259 56 0 chr1 49334538 49334592 -193329761 + L2 LINE L2 2605 2661 -653 691 282 106 41 chr1 49335412 49335856 -193328497 + L1ME LINE L1 5004 5480 -748 1309 172 133 53 chr1 49335870 49336208 -193328145 - MLT1A1 LTR MaLR 0 365 1 328 280 32 0 chr1 49336233 49336326 -193328027 + L1ME LINE L1 5476 5571 -550 370 266 37 9 chr1 49336337 49336446 -193327907 - HAL1b LINE L1 -799 549 438 1219 249 71 57 chr1 49336470 49336750 -193327603 - HAL1b LINE L1 -698 650 376 198 0 0 0 chr1 49336750 49336772 -193327581 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2399 45 3 0 chr1 49336772 49337060 -193327293 - L1PA3 LINE L1 -18 6137 5849 1219 249 71 57 chr1 49337060 49337219 -193327134 - HAL1b LINE L1 -972 376 221 2314 75 3 0 chr1 49337219 49337527 -193326826 + AluY SINE Alu 2 310 -1 1219 249 71 57 chr1 49337527 49337602 -193326751 - HAL1b LINE L1 -1127 221 123 1884 143 13 0 chr1 49337602 49337910 -193326443 - AluJo SINE Alu 0 312 1 1219 249 71 57 chr1 49337910 49337941 -193326412 - HAL1b LINE L1 -1225 123 94 343 328 72 25 chr1 49337950 49338156 -193326197 - L1MEc LINE L1 -5190 1206 986 1753 102 0 0 chr1 49338156 49338391 -193325962 - AluSx SINE Alu -77 235 1 343 328 72 25 chr1 49338391 49338419 -193325934 - L1MEc LINE L1 -5410 986 961 209 274 19 47 chr1 49338446 49338552 -193325801 + CT-rich Low_complexity Low_complexity 3 105 0 636 285 36 40 chr1 49338887 49339164 -193325189 + L2 LINE L2 3021 3296 -17 441 272 82 64 chr1 49339164 49339241 -193325112 - L1ME LINE L1 -382 5739 5665 1290 51 0 0 chr1 49339241 49339399 -193324954 - L1PA8 LINE L1 -14 6158 6001 441 272 82 64 chr1 49339399 49339624 -193324729 - L1ME LINE L1 -456 5665 5434 302 264 151 48 chr1 49339633 49340096 -193324257 - L1ME LINE L1 -755 5391 4881 247 276 66 0 chr1 49340097 49340173 -193324180 - MIR SINE MIR -10 252 172 2863 169 24 4 chr1 49340248 49340716 -193323637 - MLT2B2 LTR ERVL -38 477 1 181 182 236 0 chr1 49340785 49340840 -193323513 + L2 LINE L2 3241 3308 -5 669 322 162 32 chr1 49340845 49341314 -193323039 - L2 LINE L2 -703 2611 2082 764 302 206 16 chr1 49341320 49342118 -193322235 - L2 LINE L2 -2148 1166 218 627 102 31 20 chr1 49342566 49342664 -193321689 + U6 snRNA snRNA 7 105 -2 2152 97 3 16 chr1 49342685 49342996 -193321357 - AluSg SINE Alu -3 307 1 451 122 14 0 chr1 49343588 49343662 -193320691 + HsTC2 DNA Tc2 1 75 -1823 264 244 61 24 chr1 49343691 49343773 -193320580 + L2 LINE L2 3227 3311 -2 2049 125 23 0 chr1 49343920 49344225 -193320128 + AluSx SINE Alu 1 312 0 22 56 0 0 chr1 49344259 49344295 -193320058 + AT_rich Low_complexity Low_complexity 1 36 0 2053 84 0 45 chr1 49345028 49345336 -193319017 - AluSc SINE Alu -15 294 1 291 272 72 48 chr1 49345378 49345503 -193318850 + MIR SINE MIR 64 191 -71 2267 92 3 0 chr1 49345581 49345885 -193318468 + AluSp SINE Alu 1 305 -8 396 241 86 35 chr1 49346001 49346117 -193318236 + MER94 DNA DNA 2 123 -11 285 359 31 8 chr1 49346411 49346539 -193317814 - L2 LINE L2 -1 3312 3182 1713 141 10 27 chr1 49346561 49346858 -193317495 + AluJb SINE Alu 21 312 0 1037 326 182 39 chr1 49347033 49347510 -193316843 - L2 LINE L2 -10 3262 2855 2016 106 10 0 chr1 49347510 49347802 -193316551 - AluSp SINE Alu -3 310 16 1037 326 182 39 chr1 49347802 49347958 -193316395 - L2 LINE L2 -417 2855 2723 2169 92 27 0 chr1 49347958 49348251 -193316102 + AluSp SINE Alu 1 301 -12 1037 326 182 39 chr1 49348251 49349260 -193315093 - L2 LINE L2 -549 2723 1394 181 98 0 98 chr1 49349255 49349296 -193315057 + L2 LINE L2 3277 3313 0 * 660 261 138 0 chr1 49349642 49349860 -193314493 - MIR SINE MIR -12 250 3 2361 26 0 0 chr1 49350017 49350313 -193314040 + L1PA3 LINE L1 5871 6166 0 410 181 202 0 chr1 49351220 49351314 -193313039 - L2 LINE L2 -1 3271 3159 203 390 8 0 chr1 49351519 49351637 -193312716 + L2 LINE L2 2626 2744 -570 274 291 86 34 chr1 49351637 49351754 -193312599 - L2 LINE L2 0 3272 3150 234 246 46 15 chr1 49351994 49352059 -193312294 - L2 LINE L2 -220 3052 2986 320 330 41 0 chr1 49352514 49352611 -193311742 + L2 LINE L2 2929 3029 -243 337 336 164 0 chr1 49352919 49353041 -193311312 + L2 LINE L2 3123 3264 -8 563 301 59 9 chr1 49353609 49353828 -193310525 - L1ME4a LINE L1 -86 6035 5806 714 322 74 39 chr1 49354403 49354860 -193309493 + L2 LINE L2 2446 2918 -396 202 216 118 0 chr1 49354846 49354897 -193309456 + L2 LINE L2 3216 3272 0 * 409 306 0 8 chr1 49354914 49355048 -193309305 - MER94 DNA DNA 0 134 2 217 250 0 0 chr1 49355085 49355125 -193309228 + L2 LINE L2 3137 3176 -96 250 330 217 0 chr1 49355145 49355251 -193309102 - L2 LINE L2 -1 3271 3143 1931 128 34 0 chr1 49355339 49355637 -193308716 + AluSx SINE Alu 1 308 -4 2076 78 49 0 chr1 49356005 49356289 -193308064 - AluSg SINE Alu -12 298 1 433 296 62 11 chr1 49356364 49356540 -193307813 + MIR SINE MIR 72 256 -6 27 29 0 0 chr1 49356703 49356737 -193307616 + AT_rich Low_complexity Low_complexity 1 34 0 270 180 0 0 chr1 49357126 49357187 -193307166 + (TG)n Simple_repeat Simple_repeat 2 62 0 200 111 28 0 chr1 49357335 49357371 -193306982 + (CTG)n Simple_repeat Simple_repeat 3 39 0 21 0 0 0 chr1 49359875 49359896 -193304457 + GC_rich Low_complexity Low_complexity 1 21 0 203 200 0 0 chr1 49361833 49361868 -193302485 + A-rich Low_complexity Low_complexity 1 35 0 209 328 0 0 chr1 49363875 49363936 -193300417 + CT-rich Low_complexity Low_complexity 5 65 0 180 0 0 0 chr1 49367466 49367486 -193296867 + (CA)n Simple_repeat Simple_repeat 2 21 0 24 67 0 0 chr1 49367565 49367610 -193296743 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 49371480 49371502 -193292851 + AT_rich Low_complexity Low_complexity 1 22 0 681 261 113 17 chr1 49372657 49372895 -193291458 + MIR SINE MIR 2 262 0 647 362 23 23 chr1 49374962 49375266 -193289087 - L2 LINE L2 -1 3271 2968 302 299 0 11 chr1 49375544 49375631 -193288722 + L2 LINE L2 3185 3270 -2 197 235 59 0 chr1 49376044 49376095 -193288258 - L2 LINE L2 -10 3262 3209 343 258 31 55 chr1 49376367 49376495 -193287858 + MER5A DNA MER1_type 64 188 -1 2337 119 0 0 chr1 49377953 49378265 -193286088 + AluSx SINE Alu 1 312 0 1055 213 58 0 chr1 49378523 49378748 -193285605 - MIR SINE MIR 0 262 25 251 156 0 44 chr1 49378822 49378867 -193285486 - MIR SINE MIR -24 238 196 252 278 72 41 chr1 49378962 49379059 -193285294 + L2 LINE L2 3141 3240 -32 663 235 16 43 chr1 49379178 49379365 -193284988 + MIR SINE MIR 81 262 0 561 336 71 25 chr1 49381210 49381564 -193282789 + L1MC4a LINE L1 5478 5847 -1961 23 78 0 0 chr1 49381775 49381826 -193282527 + AT_rich Low_complexity Low_complexity 1 51 0 945 139 94 6 chr1 49381827 49382007 -193282346 + L1MC3 LINE L1 7544 7739 -46 1094 97 0 69 chr1 49382114 49382289 -193282064 + AluSg/x SINE Alu 140 302 -7 2213 121 3 0 chr1 49383029 49383335 -193281018 - AluSx SINE Alu -5 307 1 1002 172 0 0 chr1 49383348 49383499 -193280854 - FAM SINE Alu -27 158 8 2702 187 70 90 chr1 49383509 49383710 -193280643 + MER97a DNA MER1_type? 113 317 -577 2055 105 0 32 chr1 49383710 49383995 -193280358 - AluSx SINE Alu -36 276 1 2702 187 70 90 chr1 49383995 49384454 -193279899 + MER97a DNA MER1_type? 317 758 -136 1832 146 33 0 chr1 49384454 49384753 -193279600 + AluSx SINE Alu 1 308 0 2702 187 70 90 chr1 49384753 49384875 -193279478 + MER97a DNA MER1_type? 758 881 -13 613 300 67 43 chr1 49384944 49385192 -193279161 - L2 LINE L2 -361 2953 2694 2401 53 7 30 chr1 49385192 49385495 -193278858 + AluY SINE Alu 1 296 -15 613 300 67 43 chr1 49385495 49385573 -193278780 - L2 LINE L2 -620 2694 2619 1343 157 4 34 chr1 49385573 49385808 -193278545 + AluJo SINE Alu 69 296 -16 188 245 82 0 chr1 49385848 49385897 -193278456 + L2 LINE L2 3261 3313 0 524 306 64 34 chr1 49385977 49386212 -193278141 + MIR SINE MIR 20 261 -1 2207 122 26 0 chr1 49386413 49386716 -193277637 + AluSx SINE Alu 1 311 -1 425 203 118 52 chr1 49388576 49388729 -193275624 + MIR SINE MIR 18 180 -82 1823 163 17 23 chr1 49388897 49389198 -193275155 - AluJo SINE Alu -13 299 1 500 241 45 0 chr1 49389272 49389384 -193274969 - L2 LINE L2 0 3313 3197 771 311 164 22 chr1 49389530 49390207 -193274146 - L1ME4a LINE L1 -103 6018 5255 210 136 0 0 chr1 49390298 49390342 -193274011 + (TTTTA)n Simple_repeat Simple_repeat 5 48 0 327 133 0 0 chr1 49390343 49390388 -193273965 - MER66A LTR ERV1 -147 331 287 347 364 23 54 chr1 49390615 49390873 -193273480 - L2 LINE L2 -104 3168 2919 180 97 0 0 chr1 49390917 49390948 -193273405 + (TTAAA)n Simple_repeat Simple_repeat 2 32 0 676 217 0 0 chr1 49390948 49391077 -193273276 - MER3 DNA MER1_type -80 129 1 228 300 100 18 chr1 49391087 49391197 -193273156 - L2 LINE L2 -397 2916 2799 534 241 76 14 chr1 49391290 49391458 -193272895 - MIR SINE MIR -62 146 1 416 298 71 14 chr1 49392538 49392679 -193271674 - L2 LINE L2 -2 3270 3122 470 303 5 43 chr1 49392774 49392902 -193271451 + L2 LINE L2 2204 2335 -979 1791 155 3 48 chr1 49392902 49393218 -193271135 - AluJo SINE Alu -10 302 1 470 303 5 43 chr1 49393218 49393290 -193271063 + L2 LINE L2 2335 2398 -916 1891 162 0 10 chr1 49393290 49393592 -193270761 - AluJb SINE Alu -13 299 1 238 369 27 0 chr1 49393625 49393736 -193270617 + L2 LINE L2 2376 2489 -825 335 381 112 14 chr1 49393857 49394350 -193270003 + L2 LINE L2 2247 2787 -527 502 234 66 82 chr1 49394461 49394584 -193269769 - L1ME3A LINE L1 0 6170 6050 2302 78 0 0 chr1 49394584 49394889 -193269464 + AluSx SINE Alu 1 305 0 502 234 66 82 chr1 49394889 49395008 -193269345 - L1ME3A LINE L1 -120 6050 5931 1661 290 45 12 chr1 49395046 49395204 -193269149 - L1ME3A LINE L1 -220 5950 5799 1933 167 3 3 chr1 49395204 49395516 -193268837 - AluJb SINE Alu 0 312 1 1661 290 45 12 chr1 49395516 49396008 -193268345 - L1ME3A LINE L1 -371 5799 5279 210 344 36 56 chr1 49396149 49396344 -193268009 + L2 LINE L2 2720 2910 -404 258 250 105 26 chr1 49396624 49396700 -193267653 + L2 LINE L2 3160 3241 -31 199 291 18 0 chr1 49396669 49396724 -193267629 + MIR SINE MIR 207 262 0 * 219 359 84 15 chr1 49396964 49397095 -193267258 + L3 LINE CR1 768 907 -670 2514 64 3 0 chr1 49397335 49397630 -193266723 - AluSg SINE Alu -14 296 1 354 324 171 6 chr1 49397978 49398154 -193266199 + MIR SINE MIR 20 224 -38 290 357 14 7 chr1 49398152 49398292 -193266061 + L2 LINE L2 2522 2662 -652 * 426 296 91 39 chr1 49398404 49398624 -193265729 - MIR SINE MIR -19 243 3 1966 106 39 3 chr1 49398794 49399076 -193265277 + AluSx SINE Alu 1 292 -20 181 209 0 23 chr1 49399639 49399682 -193264671 + L2 LINE L2 3266 3307 -6 255 287 9 43 chr1 49399727 49399842 -193264511 + L2 LINE L2 2246 2356 -958 226 335 247 0 chr1 49399870 49400064 -193264289 + MIR SINE MIR 2 243 -19 1161 183 10 0 chr1 49400168 49400376 -193263977 - AluJo SINE Alu -98 214 5 236 320 13 13 chr1 49400412 49400490 -193263863 - L2 LINE L2 -4 3268 3191 2318 72 10 3 chr1 49400597 49400889 -193263464 + AluSp SINE Alu 1 294 -19 904 270 80 90 chr1 49401017 49401581 -193262772 - L1MC4a LINE L1 -22 6099 5531 2465 61 0 0 chr1 49401581 49401878 -193262475 + AluY SINE Alu 11 307 -4 904 270 80 90 chr1 49401878 49402277 -193262076 - L1MC4a LINE L1 -590 5531 5142 2243 97 6 10 chr1 49402277 49402588 -193261765 - AluSg SINE Alu 0 310 1 904 270 80 90 chr1 49402588 49402748 -193261605 - L1MC4a LINE L1 -979 5142 4982 280 246 27 64 chr1 49402817 49402927 -193261426 - L1MC4a LINE L1 -1310 4836 4731 1062 90 0 0 chr1 49402941 49403075 -193261278 + AluSq/x SINE Alu 1 134 -179 1074 97 0 0 chr1 49403176 49403320 -193261033 + AluSg/x SINE Alu 162 305 -5 1006 104 0 8 chr1 49403379 49403513 -193260840 - AluSq/x SINE Alu -179 133 1 659 309 121 33 chr1 49403554 49404530 -193259823 - L1MC4a LINE L1 -1444 4702 3641 633 154 100 8 chr1 49404534 49404664 -193259689 - Charlie1 DNA MER1_type 0 2761 2620 * 1091 203 20 49 chr1 49404648 49404894 -193259459 - Charlie1 DNA MER1_type -2522 239 1 467 301 86 61 chr1 49404950 49405392 -193258961 - L1MC4a LINE L1 -2579 3567 3115 891 210 51 2 chr1 49405417 49405868 -193258485 - L1ME1 LINE L1 -5 6161 5567 233 307 13 0 chr1 49406066 49406141 -193258212 + A-rich Low_complexity Low_complexity 5 80 0 189 288 15 76 chr1 49406702 49406768 -193257585 + L3 LINE CR1 1513 1574 -3 643 179 0 0 chr1 49407224 49407330 -193257023 - L2 LINE L2 -8 3305 3200 307 383 17 23 chr1 49407382 49407557 -193256796 + L2 LINE L2 2649 2822 -492 207 258 32 0 chr1 49407722 49407815 -193256538 + (TTG)n Simple_repeat Simple_repeat 1 96 0 268 219 32 49 chr1 49407845 49407968 -193256385 + T-rich Low_complexity Low_complexity 2 122 0 218 259 0 0 chr1 49408183 49408237 -193256116 - L2 LINE L2 -4 3268 3215 2141 138 0 0 chr1 49408302 49408607 -193255746 - AluJo SINE Alu -7 305 1 304 248 75 63 chr1 49408834 49409164 -193255189 - L1ME4a LINE L1 -123 5998 5648 2350 76 13 3 chr1 49409312 49409615 -193254738 - AluSp SINE Alu -7 306 1 182 255 21 0 chr1 49409636 49409683 -193254670 - L2 LINE L2 -515 2799 2752 340 270 13 101 chr1 49409698 49409857 -193254496 + L2 LINE L2 3030 3174 -98 2095 118 0 35 chr1 49410281 49410596 -193253757 - AluSq SINE Alu -9 304 1 196 241 35 0 chr1 49410825 49410883 -193253470 + L2 LINE L2 3246 3305 -8 732 299 28 16 chr1 49410923 49411174 -193253179 + MIR SINE MIR 2 255 -7 914 217 171 0 chr1 49413851 49414068 -193250285 + MIR SINE MIR 6 259 -3 376 309 138 25 chr1 49414973 49415329 -193249024 - L2 LINE L2 -978 2336 1941 203 269 19 0 chr1 49415329 49415381 -193248972 + L2 LINE L2 3261 3313 0 1240 243 134 21 chr1 49415425 49415858 -193248495 - LTR16C LTR ERVL -3 488 7 190 348 96 7 chr1 49415872 49416007 -193248346 - L2 LINE L2 -1432 1882 1736 334 259 104 44 chr1 49416532 49416667 -193247686 + L2 LINE L2 3171 3313 0 2773 235 89 52 chr1 49416743 49417409 -193246944 + MER69 DNA AcHobo 2 705 -1821 2254 102 6 22 chr1 49417409 49417724 -193246629 - AluSx SINE Alu 0 312 3 2773 235 89 52 chr1 49417724 49417864 -193246489 + MER69 DNA AcHobo 705 838 -1688 2217 186 88 47 chr1 49417854 49418240 -193246113 + MER69 DNA AcHobo 1865 2234 -292 * 2369 94 3 0 chr1 49418240 49418548 -193245805 + AluY SINE Alu 1 309 -2 2419 88 7 0 chr1 49418548 49418856 -193245497 + AluSp SINE Alu 1 310 -3 2217 186 88 47 chr1 49418856 49419102 -193245251 + MER69 DNA AcHobo 2233 2524 -2 247 220 0 0 chr1 49419546 49419596 -193244757 + L3 LINE CR1 1174 1223 -354 262 378 10 0 chr1 49420281 49420379 -193243974 + L2 LINE L2 2591 2689 -625 454 356 31 6 chr1 49420424 49420587 -193243766 + L2 LINE L2 3106 3272 0 23 0 0 0 chr1 49420858 49420881 -193243472 + AT_rich Low_complexity Low_complexity 1 23 0 296 216 98 20 chr1 49420881 49420933 -193243420 + L1MC/D LINE L1 5372 5419 -2389 783 194 16 0 chr1 49420933 49421062 -193243291 - FLAM_A SINE Alu -2 131 1 296 216 98 20 chr1 49421062 49421111 -193243242 + L1MC/D LINE L1 5419 5481 -2327 10995 108 23 1 chr1 49421121 49422698 -193241655 - Tigger1 DNA MER2_type 0 2418 808 2361 88 0 3 chr1 49422698 49423005 -193241348 - AluSp SINE Alu -7 306 1 604 265 196 0 chr1 49423241 49423445 -193240908 + MIR SINE MIR 19 262 0 1542 164 43 43 chr1 49424668 49424973 -193239380 - AluJb SINE Alu -7 305 1 2387 67 3 0 chr1 49425094 49425393 -193238960 + AluSg SINE Alu 1 300 -10 297 256 107 50 chr1 49425478 49425599 -193238754 + MIR SINE MIR 8 135 -127 267 116 47 0 chr1 49425745 49425788 -193238565 + MIR SINE MIR 106 150 -112 2152 107 3 0 chr1 49426274 49426582 -193237771 + AluSp SINE Alu 1 309 -4 209 292 148 44 chr1 49427462 49427712 -193236641 + L2 LINE L2 2831 3106 -166 898 338 50 56 chr1 49427926 49428472 -193235881 - L2 LINE L2 -8 3264 2728 564 239 168 0 chr1 49428472 49428627 -193235726 - MER5A DNA MER1_type 0 189 9 953 296 28 8 chr1 49429201 49429448 -193234905 + MIR SINE MIR 11 262 0 240 346 0 10 chr1 49430893 49430997 -193233356 + MIR SINE MIR 35 137 -71 210 256 12 37 chr1 49431955 49432037 -193232316 + GA-rich Low_complexity Low_complexity 4 83 0 201 289 94 25 chr1 49433098 49433257 -193231096 - L2 LINE L2 -188 3084 2915 291 347 0 0 chr1 49433481 49433579 -193230774 + MIR SINE MIR 158 255 -7 2023 73 0 97 chr1 49433580 49433910 -193230443 - AluSx SINE Alu -14 298 1 293 79 0 0 chr1 49434666 49434704 -193229649 - Alu SINE Alu -262 39 2 4082 114 44 2 chr1 49434705 49435433 -193228920 - Tigger1 DNA MER2_type -1602 816 1 511 215 3 1 chr1 49435433 49435531 -193228822 + L1MC4a LINE L1 5497 5592 -578 245 261 69 54 chr1 49435530 49435660 -193228693 + L1MC4a LINE L1 5827 5958 -1850 * 2013 124 0 10 chr1 49435826 49436124 -193228229 + AluSx SINE Alu 1 295 -17 276 251 116 5 chr1 49436135 49436334 -193228019 + L1M4 LINE L1 5178 5398 -748 254 323 24 73 chr1 49436373 49436537 -193227816 + L3 LINE CR1 1419 1574 -3 284 219 31 0 chr1 49436626 49436690 -193227663 - L3 LINE CR1 -5 1572 1507 189 0 0 0 chr1 49436755 49436776 -193227577 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 211 184 0 0 chr1 49436778 49436816 -193227537 - L2 LINE L2 -15 3257 3220 375 282 158 56 chr1 49436942 49437364 -193226989 - L2 LINE L2 -252 3020 2551 205 363 117 6 chr1 49437531 49437702 -193226651 + L2 LINE L2 711 900 -2414 763 143 8 0 chr1 49437918 49438037 -193226316 + FRAM SINE Alu 43 162 -14 2173 98 0 3 chr1 49438074 49438370 -193225983 + AluSx SINE Alu 1 295 -17 3914 162 15 37 chr1 49438370 49438472 -193225881 - L1MB7 LINE L1 -61 6123 6020 2159 115 3 3 chr1 49438472 49438784 -193225569 + AluSq SINE Alu 1 312 -1 3914 162 15 37 chr1 49438784 49439472 -193224881 - L1MB7 LINE L1 -164 6020 5350 318 382 31 5 chr1 49439479 49439670 -193224683 + L2 LINE L2 2695 2890 -424 1259 211 81 12 chr1 49440925 49441022 -193223331 - MER2 DNA MER2_type 0 344 255 2230 91 0 0 chr1 49441022 49441354 -193222999 + AluSx SINE Alu 1 332 0 1856 158 0 7 chr1 49441354 49441664 -193222689 + AluJo SINE Alu 1 308 -4 1259 211 81 12 chr1 49441664 49441886 -193222467 - MER2 DNA MER2_type -88 256 1 23 33 0 0 chr1 49442182 49442212 -193222141 + AT_rich Low_complexity Low_complexity 1 30 0 2387 63 7 0 chr1 49442217 49442518 -193221835 + AluSx SINE Alu 1 303 -9 2054 115 41 0 chr1 49442660 49442955 -193221398 + AluSc SINE Alu 1 307 -2 271 214 0 14 chr1 49442957 49443027 -193221326 + L1ME3A LINE L1 5883 5951 -219 580 307 170 8 chr1 49444099 49444457 -193219896 - L2 LINE L2 0 3313 2898 311 264 135 94 chr1 49444848 49444904 -193219449 - MLT1-int LTR MaLR -24 1347 1295 1867 112 0 4 chr1 49444904 49445171 -193219182 - AluSx SINE Alu -9 303 38 311 264 135 94 chr1 49445171 49445369 -193218984 - MLT1-int LTR MaLR -76 1295 1071 2012 141 0 0 chr1 49445369 49445673 -193218680 + AluSx SINE Alu 2 305 -7 311 264 135 94 chr1 49445673 49445788 -193218565 - MLT1-int LTR MaLR -300 1071 962 2346 64 0 3 chr1 49446046 49446344 -193218009 - AluY SINE Alu -14 297 1 1601 166 14 11 chr1 49447052 49447336 -193217017 + AluJb SINE Alu 1 285 -27 198 0 0 0 chr1 49447336 49447358 -193216995 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 691 307 112 18 chr1 49447370 49447548 -193216805 - L2 LINE L2 -1122 2192 2032 1855 112 60 0 chr1 49447548 49447845 -193216508 + AluSx SINE Alu 1 313 0 691 307 112 18 chr1 49447845 49448049 -193216304 - L2 LINE L2 -1282 2032 1773 1779 92 4 8 chr1 49448050 49448069 -193216284 + L1PA8A LINE L1 5842 5860 -271 1562 156 0 11 chr1 49448069 49448332 -193216021 + AluJo SINE Alu 1 260 -52 1779 92 4 8 chr1 49448332 49448576 -193215777 + L1PA8A LINE L1 5860 6103 -28 555 290 85 31 chr1 49448620 49448879 -193215474 - L2 LINE L2 -1548 1766 1494 516 330 101 2 chr1 49448921 49449150 -193215203 - MIR SINE MIR 0 262 15 1950 140 3 0 chr1 49449556 49449849 -193214504 - AluSx SINE Alu -18 294 1 1789 184 0 0 chr1 49449849 49450159 -193214194 - AluJo SINE Alu -2 310 1 204 319 103 26 chr1 49450432 49450548 -193213805 - L2 LINE L2 -2 3270 3146 715 249 148 4 chr1 49451126 49451363 -193212990 - MLT1J2 LTR MaLR -179 271 1 692 132 103 132 chr1 49451646 49451790 -193212563 + MER105 DNA DNA 1 139 -65 2009 106 31 0 chr1 49451790 49452082 -193212271 + AluY SINE Alu 1 301 -10 692 132 103 132 chr1 49452082 49452141 -193212212 + MER105 DNA DNA 139 198 -6 203 271 0 0 chr1 49452951 49453010 -193211343 + T-rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr1 49453351 49453380 -193210973 + AT_rich Low_complexity Low_complexity 1 29 0 183 176 88 0 chr1 49453438 49453472 -193210881 - MER5C DNA MER1_type -269 55 19 1033 243 15 31 chr1 49453643 49453902 -193210451 + MIR SINE MIR 8 262 0 2071 117 0 0 chr1 49453984 49454313 -193210040 + AluSx SINE Alu 3 331 0 2008 111 14 0 chr1 49454476 49454598 -193209755 + AluSx SINE Alu 1 120 -195 447 19 0 0 chr1 49454598 49454650 -193209703 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2008 111 14 0 chr1 49454650 49454838 -193209515 + AluSx SINE Alu 120 315 0 1202 132 0 66 chr1 49454900 49455063 -193209290 - AluJb SINE Alu -17 295 148 2225 75 27 3 chr1 49455063 49455356 -193208997 - AluSx SINE Alu -12 300 1 1202 132 0 66 chr1 49455356 49455405 -193208948 - AluJb SINE Alu -164 148 97 832 172 8 0 chr1 49455407 49455541 -193208812 - AluJo SINE Alu -176 136 2 422 232 203 23 chr1 49455553 49455648 -193208705 + MER112 DNA MER1_type 31 108 -152 2032 126 3 3 chr1 49455648 49455958 -193208395 - AluSx SINE Alu -2 310 1 422 232 203 23 chr1 49455958 49456039 -193208314 + MER112 DNA MER1_type 108 239 -21 269 235 0 0 chr1 49456416 49456467 -193207886 - L2 LINE L2 0 3313 3263 585 278 45 45 chr1 49456547 49456770 -193207583 - MLT1K LTR MaLR -286 302 80 2075 104 0 26 chr1 49457113 49457421 -193206932 + AluSq SINE Alu 1 300 -13 4851 201 54 23 chr1 49457431 49458590 -193205763 + L1MB8 LINE L1 2894 4097 -2049 2059 136 0 0 chr1 49458590 49458891 -193205462 - AluSx SINE Alu -11 301 1 4851 201 54 23 chr1 49458891 49458995 -193205358 + L1MB8 LINE L1 4097 4196 -1950 4017 189 23 5 chr1 49458993 49459772 -193204581 + L1MB8 LINE L1 5285 6077 -101 * 2129 128 31 22 chr1 49459793 49459849 -193204504 + MER46B DNA MER2_type 1 55 -2676 731 191 0 29 chr1 49459849 49459985 -193204368 - FLAM_A SINE Alu -1 132 1 2129 128 31 22 chr1 49459985 49460162 -193204191 + MER46B DNA MER2_type 55 117 -2614 2193 78 0 3 chr1 49460162 49460479 -193203874 + AluSg SINE Alu 1 316 0 2129 128 31 22 chr1 49460479 49460601 -193203752 + MER46B DNA MER2_type 117 236 0 788 152 8 23 chr1 49460622 49460754 -193203599 + FLAM_A SINE Alu 1 130 -3 311 163 12 50 chr1 49460761 49460841 -193203512 + L1MB8 LINE L1 6102 6178 0 2114 104 10 3 chr1 49460854 49461153 -193203200 + AluSq SINE Alu 3 303 -10 274 248 75 63 chr1 49461301 49461631 -193202722 + L1ME4a LINE L1 5648 5998 -123 2039 138 0 0 chr1 49461858 49462163 -193202190 + AluJo SINE Alu 1 305 -7 223 259 0 0 chr1 49462228 49462282 -193202071 + L2 LINE L2 3215 3268 -4 1260 103 0 0 chr1 49462496 49462661 -193201692 - AluSg SINE Alu -145 165 1 343 280 65 11 chr1 49462746 49462839 -193201514 + L2 LINE L2 3201 3298 -15 189 107 0 0 chr1 49462841 49462869 -193201484 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 344 215 92 123 chr1 49462871 49463099 -193201254 - L2 LINE L2 -461 2853 2633 425 303 79 22 chr1 49463108 49463336 -193201017 - L2 LINE L2 -922 2392 2152 207 0 0 0 chr1 49464266 49464289 -193200064 + (CA)n Simple_repeat Simple_repeat 2 24 0 291 265 108 80 chr1 49465199 49465360 -193198993 + L2 LINE L2 39 211 -3103 503 257 16 49 chr1 49465360 49465543 -193198810 - MER5B DNA MER1_type -1 177 1 291 265 108 80 chr1 49465543 49465603 -193198750 + L2 LINE L2 211 267 -3047 833 196 39 22 chr1 49465603 49465782 -193198571 - MER5A DNA MER1_type 0 189 8 * 872 253 108 29 chr1 49465762 49466078 -193198275 + L2 LINE L2 686 1026 -2288 2957 251 197 16 chr1 49466082 49467539 -193196814 + L2 LINE L2 1598 3313 0 234 0 0 0 chr1 49467969 49467995 -193196358 + (TGGGGG)n Simple_repeat Simple_repeat 6 31 0 414 0 0 0 chr1 49468976 49469022 -193195331 + (CA)n Simple_repeat Simple_repeat 2 47 0 234 0 0 0 chr1 49469056 49469082 -193195271 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 332 77 19 0 chr1 49469081 49469133 -193195220 + (CA)n Simple_repeat Simple_repeat 1 53 0 361 329 67 13 chr1 49469430 49469579 -193194774 - L2 LINE L2 -4 3268 3112 242 0 0 57 chr1 49469671 49469706 -193194647 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1061 162 0 34 chr1 49469709 49469913 -193194440 - AluJo SINE Alu -30 282 86 1741 122 0 0 chr1 49469978 49470216 -193194137 + AluSx SINE Alu 1 238 -74 249 93 0 0 chr1 49470317 49470360 -193193993 + Alu SINE Alu 260 302 0 825 155 63 75 chr1 49470736 49470858 -193193495 + MER5A DNA MER1_type 6 127 -62 2086 118 10 3 chr1 49470858 49471154 -193193199 - AluSc SINE Alu -11 298 1 825 155 63 75 chr1 49471154 49471205 -193193148 + MER5A DNA MER1_type 127 177 -12 623 257 42 42 chr1 49472018 49472232 -193192121 - MIR SINE MIR -35 227 14 396 243 42 106 chr1 49473704 49473893 -193190460 + MIR SINE MIR 21 197 -65 189 191 24 24 chr1 49475904 49475946 -193188407 - MIR SINE MIR -117 145 104 2491 90 0 0 chr1 49476275 49476586 -193187767 + AluY SINE Alu 1 311 0 2129 140 10 0 chr1 49476610 49476947 -193187406 + AluSx SINE Alu 1 340 0 1899 143 14 3 chr1 49476972 49477258 -193187095 + AluJo SINE Alu 19 307 -5 275 217 29 14 chr1 49477258 49477327 -193187026 + GA-rich Low_complexity Low_complexity 3 72 0 313 273 116 16 chr1 49477720 49477841 -193186512 + L2 LINE L2 3180 3312 -1 447 19 0 0 chr1 49478904 49478956 -193185397 + (TG)n Simple_repeat Simple_repeat 2 53 0 219 286 0 0 chr1 49479662 49479718 -193184635 + L3b LINE CR1 1177 1232 -351 181 163 41 0 chr1 49480398 49480447 -193183906 + CT-rich Low_complexity Low_complexity 2 52 0 204 279 0 0 chr1 49480788 49480831 -193183522 + (CGTG)n Simple_repeat Simple_repeat 4 46 0 506 246 36 29 chr1 49481126 49481264 -193183089 + L2 LINE L2 3169 3307 -6 196 296 0 0 chr1 49481792 49481846 -193182507 - L3 LINE CR1 -4 1573 1520 188 333 0 18 chr1 49482533 49482590 -193181763 - L2 LINE L2 -3 3269 3214 245 364 63 73 chr1 49483184 49483470 -193180883 - L2 LINE L2 -49 3223 2941 217 253 36 24 chr1 49483596 49483679 -193180674 + GA-rich Low_complexity Low_complexity 5 88 0 188 169 254 0 chr1 49483679 49483738 -193180615 - MIR SINE MIR -6 256 183 660 304 140 14 chr1 49483839 49484254 -193180099 + L2 LINE L2 2243 2709 -605 260 252 74 132 chr1 49484327 49484652 -193179701 + L2 LINE L2 2926 3231 -82 2198 104 7 0 chr1 49484833 49485142 -193179211 + AluSx SINE Alu 1 311 0 1850 155 3 14 chr1 49485152 49485443 -193178910 + AluJo SINE Alu 1 288 -24 2482 81 3 0 chr1 49485603 49485911 -193178442 + AluY SINE Alu 1 309 -2 316 297 0 0 chr1 49485950 49486024 -193178329 + L2 LINE L2 3240 3313 0 218 306 92 41 chr1 49486017 49486115 -193178238 - L2 LINE L2 -837 2477 2375 * 642 341 100 47 chr1 49486252 49486592 -193177761 - L2 LINE L2 0 3272 2915 329 322 48 57 chr1 49486776 49487003 -193177350 - L2 LINE L2 -431 2883 2659 450 0 0 0 chr1 49487095 49487145 -193177208 + (TG)n Simple_repeat Simple_repeat 1 50 0 249 33 0 0 chr1 49487144 49487174 -193177179 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 2277 86 0 13 chr1 49487198 49487499 -193176854 + AluY SINE Alu 1 297 -14 210 379 141 29 chr1 49487553 49487859 -193176494 + L2 LINE L2 2917 3256 -16 1692 173 4 7 chr1 49487928 49488206 -193176147 - AluJo SINE Alu -27 285 9 331 200 80 13 chr1 49488208 49488283 -193176070 + L3 LINE CR1 795 874 -703 460 371 48 28 chr1 49488289 49488580 -193175773 - L2 LINE L2 -4 3268 2972 406 258 53 107 chr1 49488636 49488880 -193175473 + L2 LINE L2 3027 3257 -15 339 25 0 0 chr1 49488882 49488922 -193175431 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 321 315 0 11 chr1 49489082 49489174 -193175179 + L3 LINE CR1 1028 1118 -459 564 304 119 5 chr1 49489234 49489428 -193174925 + MIR SINE MIR 36 251 -11 210 191 0 0 chr1 49491981 49492023 -193172330 + A-rich Low_complexity Low_complexity 3 44 0 244 229 0 49 chr1 49492375 49492436 -193171917 + L2 LINE L2 3212 3269 -3 354 330 159 48 chr1 49492560 49494273 -193170080 + L2 LINE L2 482 2383 -931 282 116 0 0 chr1 49494375 49494418 -193169935 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 643 246 0 0 chr1 49494494 49494608 -193169745 + FLAM_A SINE Alu 1 114 -19 2412 112 0 0 chr1 49494661 49494973 -193169380 + AluSx SINE Alu 1 312 0 1127 264 94 44 chr1 49495158 49495327 -193169026 + L1ME4a LINE L1 5258 5417 -704 2445 78 0 0 chr1 49495327 49495622 -193168731 - AluY SINE Alu -16 295 1 1127 264 94 44 chr1 49495622 49495637 -193168716 + L1ME4a LINE L1 5417 5430 -691 2285 124 3 0 chr1 49495637 49495935 -193168418 - AluSx SINE Alu -13 299 1 1127 264 94 44 chr1 49495935 49496343 -193168010 + L1ME4a LINE L1 5430 5881 -240 300 27 0 0 chr1 49496370 49496407 -193167946 + (CA)n Simple_repeat Simple_repeat 2 38 0 2028 128 0 14 chr1 49496409 49496699 -193167654 - AluSx SINE Alu -26 286 1 4050 101 4 63 chr1 49496699 49496814 -193167539 - Ricksha DNA DNA -121 3125 3005 2032 111 0 27 chr1 49496814 49497112 -193167241 + AluSx SINE Alu 23 312 0 4050 101 4 63 chr1 49497112 49497706 -193166647 - Ricksha DNA DNA -241 3005 2458 2135 113 7 14 chr1 49497714 49498024 -193166329 + AluSg SINE Alu 7 310 0 666 154 32 8 chr1 49498033 49498156 -193166197 - Ricksha DNA DNA -1920 126 1 325 280 65 28 chr1 49498518 49498625 -193165728 + L2 LINE L2 3186 3296 -17 777 273 168 90 chr1 49498714 49499417 -193164936 - L3 LINE CR1 -14 1563 806 315 306 54 66 chr1 49499426 49499659 -193164694 - MIR SINE MIR -8 254 16 240 346 0 0 chr1 49499717 49499798 -193164555 - MIR SINE MIR -18 244 164 2091 138 16 3 chr1 49500232 49500537 -193163816 + AluJo SINE Alu 1 309 -3 387 333 163 33 chr1 49500579 49500978 -193163375 - L2 LINE L2 -15 3257 2807 1725 182 3 17 chr1 49501006 49501303 -193163050 - AluJb SINE Alu -19 293 1 1155 65 7 7 chr1 49501312 49501502 -193162851 - L1PA4 LINE L1 0 6155 6001 2385 100 3 3 chr1 49502153 49502462 -193161891 - AluSg SINE Alu -1 309 1 264 308 67 39 chr1 49504281 49504385 -193159968 - L3 LINE CR1 -101 1476 1370 1136 311 197 18 chr1 49504549 49505312 -193159041 - L3 LINE CR1 -199 1378 480 228 331 85 72 chr1 49505286 49505657 -193158696 + L2 LINE L2 1615 1980 -1334 * 2316 112 0 0 chr1 49505657 49505962 -193158391 + AluSx SINE Alu 1 305 -7 2224 103 0 0 chr1 49505962 49506268 -193158085 + AluSx SINE Alu 1 306 0 228 331 85 72 chr1 49506268 49506446 -193157907 + L2 LINE L2 1979 2173 -1141 200 354 24 12 chr1 49506636 49506718 -193157635 - L2 LINE L2 -207 3065 2983 720 268 29 96 chr1 49507985 49508177 -193156176 - MIR SINE MIR -1 261 92 2147 148 0 0 chr1 49508177 49508475 -193155878 + AluSx SINE Alu 9 306 -6 720 268 29 96 chr1 49508475 49508562 -193155791 - MIR SINE MIR -170 92 1 265 283 126 81 chr1 49508587 49508810 -193155543 - L3 LINE CR1 -2 1575 1343 22 0 0 0 chr1 49508898 49508920 -193155433 + AT_rich Low_complexity Low_complexity 1 22 0 226 214 0 0 chr1 49510558 49510600 -193153753 + GA-rich Low_complexity Low_complexity 6 47 0 770 275 64 4 chr1 49511311 49511544 -193152809 + MIR SINE MIR 4 250 -12 469 306 0 8 chr1 49511974 49512098 -193152255 - L2 LINE L2 -1 3312 3190 302 320 145 11 chr1 49512375 49512582 -193151771 - MIR SINE MIR -16 246 6 1560 83 5 0 chr1 49512782 49512974 -193151379 - AluSp SINE Alu -13 300 108 748 304 169 21 chr1 49514232 49514912 -193149441 + L2 LINE L2 1686 2466 -848 350 384 80 19 chr1 49514921 49515406 -193148947 + L2 LINE L2 2271 2785 -529 1834 157 26 20 chr1 49515512 49515817 -193148536 - AluJo SINE Alu -5 307 1 1913 152 37 7 chr1 49515943 49516240 -193148113 + AluSg SINE Alu 1 306 -4 302 267 27 0 chr1 49516291 49516366 -193147987 + L2 LINE L2 3232 3308 -5 210 301 14 0 chr1 49517997 49518070 -193146283 + L2 LINE L2 2310 2383 -931 2339 91 27 0 chr1 49518145 49518441 -193145912 - AluSx SINE Alu -8 304 1 724 268 71 11 chr1 49518445 49518714 -193145639 - L1ME LINE L1 -392 5729 5445 1425 177 94 14 chr1 49519264 49519552 -193144801 + AluJb SINE Alu 2 312 0 699 288 77 79 chr1 49519554 49519591 -193144762 + L2 LINE L2 2736 2772 -500 2631 46 3 0 chr1 49519591 49519898 -193144455 - AluY SINE Alu -3 308 1 699 288 77 79 chr1 49519898 49520401 -193143952 + L2 LINE L2 2772 3264 -8 297 0 0 0 chr1 49520405 49520438 -193143915 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1017 271 127 17 chr1 49520834 49521188 -193143165 - LTR33 LTR ERVL -114 407 15 474 330 53 77 chr1 49521852 49522106 -193142247 + L2 LINE L2 2554 2813 -459 1912 153 3 0 chr1 49522106 49522393 -193141960 - AluJo SINE Alu -24 288 1 474 330 53 77 chr1 49522393 49522512 -193141841 + L2 LINE L2 2813 2933 -339 2464 62 0 3 chr1 49522512 49522800 -193141553 - AluY SINE Alu -24 287 1 474 330 53 77 chr1 49522800 49523059 -193141294 + L2 LINE L2 2933 3163 -109 2127 138 3 0 chr1 49523059 49523357 -193140996 - AluSx SINE Alu -11 301 3 474 330 53 77 chr1 49523357 49523465 -193140888 + L2 LINE L2 3163 3272 0 2339 68 10 3 chr1 49523591 49523884 -193140469 - AluY SINE Alu -16 295 1 360 206 0 0 chr1 49524101 49524164 -193140189 + L1MC4 LINE L1 6647 6709 -1333 343 255 11 53 chr1 49524142 49524236 -193140117 - L1MC4 LINE L1 -1339 6703 6614 * 689 144 23 38 chr1 49524264 49524396 -193139957 + FLAM_C SINE Alu 1 130 -3 412 149 0 23 chr1 49524404 49524491 -193139862 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 234 91 0 0 chr1 49524582 49524615 -193139738 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 751 273 46 29 chr1 49525549 49525787 -193138566 - MIR SINE MIR -16 246 5 505 233 8 31 chr1 49526006 49526135 -193138218 + L2 LINE L2 3168 3293 -20 2221 114 10 0 chr1 49527590 49527889 -193136464 - AluSx SINE Alu -10 302 1 234 330 231 0 chr1 49528029 49528250 -193136103 - L2 LINE L2 0 3272 3001 2240 74 4 0 chr1 49528258 49528528 -193135825 + AluSg SINE Alu 1 271 -39 1864 175 0 0 chr1 49528662 49528948 -193135405 + AluJb SINE Alu 1 286 -26 189 333 27 13 chr1 49529121 49529196 -193135157 - L2 LINE L2 -669 2645 2570 180 265 44 15 chr1 49530520 49530588 -193133765 + L2 LINE L2 1962 2031 -1283 432 311 47 33 chr1 49530596 49530808 -193133545 + MIR SINE MIR 5 219 -43 241 303 78 35 chr1 49531076 49531218 -193133135 - L2 LINE L2 -1868 1446 1299 * 405 276 27 104 chr1 49531213 49531314 -193133039 + L2 LINE L2 2531 2638 -676 695 199 17 39 chr1 49531314 49531495 -193132858 - MER5B DNA MER1_type 0 178 2 2036 127 17 7 chr1 49531500 49531800 -193132553 + AluSx SINE Alu 1 303 -9 405 276 27 104 chr1 49531800 49531913 -193132440 + L2 LINE L2 2642 2734 -580 256 300 90 0 chr1 49531898 49531998 -193132355 + L2 LINE L2 3123 3231 -41 * 207 306 28 0 chr1 49532088 49532160 -193132193 + L2 LINE L2 3199 3272 0 201 74 0 0 chr1 49532315 49532342 -193132011 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 221 274 95 0 chr1 49534790 49534874 -193129479 - L2 LINE L2 -102 3170 3079 265 285 90 14 chr1 49534919 49535063 -193129290 + L2 LINE L2 2264 2418 -896 587 234 122 10 chr1 49535155 49535360 -193128993 + L2 LINE L2 2687 2914 -400 324 266 44 95 chr1 49535393 49535551 -193128802 + L2 LINE L2 3123 3272 0 220 316 66 23 chr1 49535761 49535922 -193128431 + MIR3 SINE MIR 41 205 -3 942 296 163 16 chr1 49537589 49537819 -193126534 + L2 LINE L2 2472 2667 -646 2227 135 0 0 chr1 49537819 49538122 -193126231 + AluSx SINE Alu 1 303 -9 942 296 163 16 chr1 49538122 49538620 -193125733 + L2 LINE L2 2667 3313 0 860 301 95 22 chr1 49538619 49539114 -193125239 + L2 LINE L2 2144 2674 -640 * 377 237 10 31 chr1 49539289 49539386 -193124967 + L2 LINE L2 3171 3265 -7 210 64 21 43 chr1 49540098 49540145 -193124208 + (TATAA)n Simple_repeat Simple_repeat 1 46 0 328 271 0 68 chr1 49540157 49540275 -193124078 - MIR SINE MIR 0 262 153 261 292 140 18 chr1 49540560 49540731 -193123622 - L2 LINE L2 -927 2387 2196 244 272 7 130 chr1 49540759 49540860 -193123493 + L2 LINE L2 2793 2844 -428 1748 141 45 21 chr1 49540860 49541136 -193123217 + AluJb SINE Alu 1 286 -26 471 113 0 0 chr1 49541136 49541207 -193123146 + (TGAA)n Simple_repeat Simple_repeat 3 73 0 1748 141 45 21 chr1 49541207 49541221 -193123132 + AluJb SINE Alu 286 298 -14 244 272 7 130 chr1 49541221 49541374 -193122979 + L2 LINE L2 2844 3014 -258 249 295 13 0 chr1 49541744 49541822 -193122531 + L2 LINE L2 3019 3097 -175 3523 100 54 31 chr1 49541895 49542503 -193121850 - L1MA4A LINE L1 0 6303 5682 2555 82 21 0 chr1 49542505 49542881 -193121472 + L1MA4A LINE L1 5322 5705 -598 257 333 43 17 chr1 49542916 49543033 -193121320 - L2 LINE L2 -3 3269 3150 232 229 0 0 chr1 49543880 49543928 -193120425 + (CACCT)n Simple_repeat Simple_repeat 3 50 0 270 292 0 21 chr1 49544341 49544437 -193119916 + C-rich Low_complexity Low_complexity 4 97 0 309 311 169 11 chr1 49544526 49544709 -193119644 - L2 LINE L2 0 3313 3102 1036 101 0 0 chr1 49544711 49544840 -193119513 + AluSq/x SINE Alu 3 131 -182 650 130 0 0 chr1 49544943 49545035 -193119318 - FLAM_C SINE Alu -17 126 35 2082 114 47 3 chr1 49545100 49545399 -193118954 - AluSx SINE Alu 0 312 1 508 259 44 92 chr1 49545762 49545847 -193118506 - MIR SINE MIR 0 262 174 2185 100 33 3 chr1 49545847 49546147 -193118206 + AluY SINE Alu 1 309 -2 508 259 44 92 chr1 49546147 49546289 -193118064 - MIR SINE MIR -88 174 46 1945 135 54 7 chr1 49546724 49547074 -193117279 + AluJb SINE Alu 1 364 0 326 356 0 9 chr1 49547117 49547232 -193117121 - MIR SINE MIR -129 133 20 925 343 46 3 chr1 49547293 49547640 -193116713 + L3 LINE CR1 1138 1499 -78 421 297 60 60 chr1 49549310 49549440 -193114913 - L2 LINE L2 -1191 2123 1994 2420 90 0 0 chr1 49549440 49549739 -193114614 + AluSx SINE Alu 2 300 -12 1939 80 76 4 chr1 49549740 49549991 -193114362 + AluSq SINE Alu 34 302 -11 421 297 60 60 chr1 49549991 49550107 -193114246 - L2 LINE L2 -1319 1995 1875 272 274 74 0 chr1 49550214 49550309 -193114044 - L2 LINE L2 -2 3311 3210 211 250 0 88 chr1 49550770 49550838 -193113515 + L2 LINE L2 3211 3272 0 593 252 75 9 chr1 49550912 49551142 -193113211 - MIR SINE MIR -7 255 10 2426 99 0 0 chr1 49551652 49551964 -193112389 - AluSx SINE Alu 0 312 1 268 318 24 29 chr1 49552404 49552574 -193111779 + L2 LINE L2 1802 1970 -1344 543 225 256 0 chr1 49552643 49552834 -193111519 + MIR SINE MIR 3 242 -20 233 342 32 21 chr1 49553085 49553275 -193111078 - L2 LINE L2 -894 2420 2229 2407 103 3 0 chr1 49554101 49554412 -193109941 - AluSx SINE Alu 0 312 1 351 240 48 56 chr1 49554679 49554804 -193109549 + MIR SINE MIR 102 225 -37 487 259 9 0 chr1 49556184 49556296 -193108057 + MIR SINE MIR 53 165 -97 2625 54 0 0 chr1 49556298 49556596 -193107757 + AluY SINE Alu 1 298 -13 192 333 83 0 chr1 49556638 49556722 -193107631 - MIR SINE MIR -70 192 102 198 282 265 35 chr1 49557834 49557905 -193106448 - L2 LINE L2 -228 3044 2991 186 118 0 0 chr1 49557905 49557939 -193106414 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2186 94 32 0 chr1 49557941 49558218 -193106135 - AluSq SINE Alu -27 286 1 198 282 265 35 chr1 49558218 49558313 -193106040 - L2 LINE L2 -281 2991 2836 205 309 45 64 chr1 49558358 49558468 -193105885 + MIR SINE MIR 39 146 -62 206 250 73 0 chr1 49558601 49558669 -193105684 + MIR3 SINE MIR 118 190 -18 204 286 0 0 chr1 49559072 49559128 -193105225 + GA-rich Low_complexity Low_complexity 1 56 0 267 317 24 24 chr1 49559660 49559813 -193104540 - MIR SINE MIR -62 146 3 1861 135 29 0 chr1 49560409 49560690 -193103663 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr1 49560690 49560718 -193103635 + AT_rich Low_complexity Low_complexity 1 28 0 2432 86 0 7 chr1 49560766 49561067 -193103286 + AluSx SINE Alu 1 299 -13 216 273 0 30 chr1 49561228 49561294 -193103059 + CT-rich Low_complexity Low_complexity 3 66 0 413 242 20 0 chr1 49562001 49562100 -193102253 + MER5A DNA MER1_type 9 109 -80 2497 77 0 3 chr1 49562719 49563029 -193101324 - AluY SINE Alu -2 309 1 2269 109 10 0 chr1 49563245 49563539 -193100814 + AluSq SINE Alu 1 297 -16 180 244 0 0 chr1 49563539 49563580 -193100773 + MIR SINE MIR 212 252 -10 247 281 0 24 chr1 49563931 49564013 -193100340 + GA-rich Low_complexity Low_complexity 1 80 0 347 328 38 43 chr1 49564098 49564239 -193100114 - MIR SINE MIR -46 216 75 189 107 0 0 chr1 49564239 49564267 -193100086 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 347 328 38 43 chr1 49564267 49564311 -193100042 - MIR SINE MIR -187 75 32 387 0 0 0 chr1 49564434 49564477 -193099876 + (CA)n Simple_repeat Simple_repeat 1 43 0 216 67 0 0 chr1 49564931 49564961 -193099392 + (TC)n Simple_repeat Simple_repeat 2 31 0 184 294 98 29 chr1 49565993 49566095 -193098258 - L2 LINE L2 -6 3266 3158 379 96 0 0 chr1 49566101 49566153 -193098200 + MER66A LTR ERV1 287 338 -140 24 0 0 0 chr1 49566153 49566177 -193098176 + AT_rich Low_complexity Low_complexity 1 24 0 1654 173 60 0 chr1 49566357 49566641 -193097712 + AluJo SINE Alu 1 301 -11 546 309 147 25 chr1 49566818 49567301 -193097052 - L2 LINE L2 -557 2757 2216 354 248 135 21 chr1 49567358 49567499 -193096854 + MIR SINE MIR 2 158 -104 2368 98 0 0 chr1 49567505 49567801 -193096552 + AluSq SINE Alu 1 296 -17 431 265 125 29 chr1 49567998 49568134 -193096219 + L2 LINE L2 3124 3272 0 445 351 101 30 chr1 49568153 49568883 -193095470 - L2 LINE L2 -1405 1909 1128 234 326 109 32 chr1 49569270 49569491 -193094862 - L2 LINE L2 -2823 491 254 2276 92 7 0 chr1 49571986 49572289 -193092064 + AluSc SINE Alu 1 305 -4 550 304 34 71 chr1 49572476 49572742 -193091611 - L2 LINE L2 -35 3237 2982 1544 298 89 61 chr1 49573467 49574449 -193089904 + L2 LINE L2 1932 2885 -387 2495 46 0 10 chr1 49574449 49574753 -193089600 - AluY SINE Alu -10 301 1 1544 298 89 61 chr1 49574753 49574890 -193089463 + L2 LINE L2 2885 3017 -255 2108 104 7 7 chr1 49574890 49575187 -193089166 - AluJo SINE Alu -15 297 1 1544 298 89 61 chr1 49575187 49575355 -193088998 + L2 LINE L2 3017 3264 -8 192 158 0 0 chr1 49575368 49575406 -193088947 + (TAGG)n Simple_repeat Simple_repeat 1 38 0 459 316 115 10 chr1 49575415 49575624 -193088729 + MIR SINE MIR 32 262 0 300 267 20 20 chr1 49575624 49575725 -193088628 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 529 240 33 0 chr1 49575926 49576047 -193088306 - MIR SINE MIR -71 191 67 202 283 0 0 chr1 49576127 49576173 -193088180 + (CA)n Simple_repeat Simple_repeat 2 47 0 254 330 78 0 chr1 49576805 49576908 -193087445 - MIR3 SINE MIR -89 119 9 277 296 37 0 chr1 49577651 49577732 -193086621 + L3 LINE CR1 1480 1563 -14 247 362 159 14 chr1 49578610 49578817 -193085536 + L2 LINE L2 3077 3313 0 265 314 58 0 chr1 49578857 49578943 -193085410 + MIR3 SINE MIR 109 199 -9 183 307 0 27 chr1 49578949 49579024 -193085329 - MIR3 SINE MIR -129 79 7 744 146 28 142 chr1 49579579 49579791 -193084562 + MER53 DNA DNA 2 189 0 822 146 21 21 chr1 49580362 49580506 -193083847 + AluJb SINE Alu 1 144 -168 1881 130 0 17 chr1 49580508 49580800 -193083553 + AluSx SINE Alu 25 311 -1 2136 218 62 15 chr1 49581763 49582344 -193082009 - MLT1G LTR MaLR -20 575 2 350 302 63 59 chr1 49582443 49582665 -193081688 - L2 LINE L2 -49 3223 3001 2160 164 108 52 chr1 49582670 49583083 -193081270 - MLT1F1 LTR MaLR -4 563 114 210 71 0 0 chr1 49583083 49583111 -193081242 + (CTATT)n Simple_repeat Simple_repeat 4 31 0 2160 164 108 52 chr1 49583111 49583216 -193081137 - MLT1F1 LTR MaLR -453 114 16 1065 225 54 12 chr1 49583233 49583473 -193080880 - MIR SINE MIR 0 262 13 23 0 0 0 chr1 49584148 49584171 -193080182 + GC_rich Low_complexity Low_complexity 1 23 0 210 222 0 0 chr1 49584613 49584658 -193079695 - MIR SINE MIR -65 143 99 398 257 14 35 chr1 49584738 49584882 -193079471 + C-rich Low_complexity Low_complexity 2 142 0 241 281 0 12 chr1 49585143 49585225 -193079128 + (CA)n Simple_repeat Simple_repeat 1 81 0 245 285 80 37 chr1 49587035 49587235 -193077118 + MIR SINE MIR 8 256 -6 2444 75 0 0 chr1 49587800 49588105 -193076248 - AluSq SINE Alu -8 305 1 953 135 49 43 chr1 49588260 49588445 -193075908 - MER20 DNA MER1_type 0 219 34 180 179 0 0 chr1 49589491 49589530 -193074823 + (GGCTG)n Simple_repeat Simple_repeat 3 41 0 198 71 0 0 chr1 49590104 49590132 -193074221 + (TG)n Simple_repeat Simple_repeat 2 29 0 485 325 99 19 chr1 49590529 49590843 -193073510 - L2 LINE L2 -1108 2206 1868 255 211 22 56 chr1 49591508 49591598 -193072755 + GA-rich Low_complexity Low_complexity 3 89 0 267 79 0 0 chr1 49591907 49591945 -193072408 + (GA)n Simple_repeat Simple_repeat 2 39 0 182 259 0 37 chr1 49593536 49593590 -193070763 + L2 LINE L2 2492 2543 -771 2436 88 0 0 chr1 49593640 49593948 -193070405 + AluSc SINE Alu 1 308 -1 2399 78 0 0 chr1 49593948 49594254 -193070099 + AluSg SINE Alu 1 306 -4 352 268 91 101 chr1 49594672 49594870 -193069483 - MER91A DNA MER1_type 0 196 1 349 374 92 0 chr1 49595603 49595798 -193068555 + L2 LINE L2 2917 3129 -143 259 136 197 0 chr1 49595805 49595871 -193068482 - MLT1H LTR MaLR 0 595 517 729 219 62 83 chr1 49595913 49596244 -193068109 - MLT1H LTR MaLR -171 384 1 895 159 0 0 chr1 49596439 49596571 -193067782 + AluSq/x SINE Alu 1 132 -181 824 146 0 0 chr1 49596985 49597108 -193067245 - FLAM_C SINE Alu -7 136 14 374 313 138 6 chr1 49597162 49597322 -193067031 - MIR SINE MIR -55 207 27 290 326 78 50 chr1 49598201 49598459 -193065894 - L2 LINE L2 -782 2532 2268 213 135 19 39 chr1 49599285 49599337 -193065016 + CT-rich Low_complexity Low_complexity 1 51 0 390 330 58 29 chr1 49600107 49600280 -193064073 - MIR SINE MIR -78 184 7 438 309 103 16 chr1 49601128 49601322 -193063031 + MIR SINE MIR 34 244 -18 214 269 108 54 chr1 49601830 49601923 -193062430 + MIR3 SINE MIR 97 194 -14 21 0 0 0 chr1 49605107 49605128 -193059225 + GC_rich Low_complexity Low_complexity 1 21 0 2307 97 0 22 chr1 49606654 49606973 -193057380 - AluSx SINE Alu 0 312 1 242 368 63 25 chr1 49610164 49610403 -193053950 - L2 LINE L2 -341 2973 2726 219 69 0 0 chr1 49612601 49612630 -193051723 + (CCTG)n Simple_repeat Simple_repeat 4 32 0 740 238 81 5 chr1 49615063 49615273 -193049080 + MIR SINE MIR 34 259 -3 220 282 0 39 chr1 49617737 49617815 -193046538 + (CATA)n Simple_repeat Simple_repeat 3 77 0 * 241 293 0 0 chr1 49617760 49617818 -193046535 + (CA)n Simple_repeat Simple_repeat 1 58 0 265 143 20 20 chr1 49620131 49620180 -193044173 - L2 LINE L2 -6 3307 3259 260 146 21 0 chr1 49620714 49620762 -193043591 + L1MA9 LINE L1 6014 6062 -250 973 176 0 0 chr1 49620861 49621046 -193043307 + AluJb SINE Alu 134 318 0 225 125 0 0 chr1 49621046 49621078 -193043275 + L1MB1 LINE L1 6128 6159 -30 517 282 37 56 chr1 49623005 49623221 -193041132 + MIR SINE MIR 33 244 -18 1229 124 5 35 chr1 49623568 49623611 -193040742 + AluJo SINE Alu 93 136 -176 2240 129 0 0 chr1 49623611 49623921 -193040432 + AluSg SINE Alu 1 310 0 1229 124 5 35 chr1 49623921 49624078 -193040275 + AluJo SINE Alu 136 287 -25 248 329 29 15 chr1 49624106 49624243 -193040110 + L1MC4 LINE L1 7611 7749 -293 272 224 164 20 chr1 49624272 49624407 -193039946 + L1ME4a LINE L1 5877 6039 -82 1845 167 0 11 chr1 49624407 49624715 -193039638 - AluJb SINE Alu 0 309 5 272 224 164 20 chr1 49624715 49624730 -193039623 + L1ME4a LINE L1 6039 6050 -71 402 239 97 7 chr1 49624970 49625125 -193039228 + L2 LINE L2 2029 2197 -1117 180 315 71 48 chr1 49625138 49625435 -193038918 + L2 LINE L2 2384 2692 -622 2202 122 0 3 chr1 49625435 49625730 -193038623 - AluSx SINE Alu -18 294 1 180 315 71 48 chr1 49625730 49625784 -193038569 + L2 LINE L2 2692 2743 -571 1857 75 9 0 chr1 49626734 49626962 -193037391 - AluSg/x SINE Alu -8 304 75 1740 168 62 3 chr1 49627471 49627581 -193036772 + MER58B DNA MER1_type 1 103 -2317 2152 98 37 0 chr1 49627581 49627876 -193036477 + AluY SINE Alu 1 306 -5 1740 168 62 3 chr1 49627876 49628087 -193036266 + MER58B DNA MER1_type 103 341 0 1549 147 0 39 chr1 49628121 49628379 -193035974 - AluSx SINE Alu -24 288 41 418 216 128 0 chr1 49628489 49628591 -193035762 - MIR SINE MIR -58 204 90 1129 151 0 11 chr1 49629924 49630103 -193034250 - AluJb SINE Alu -5 307 131 2152 103 7 0 chr1 49630113 49630418 -193033935 - AluSq SINE Alu 0 307 1 279 325 21 32 chr1 49630438 49630626 -193033727 + L2 LINE L2 472 657 -2657 711 265 84 37 chr1 49630719 49630774 -193033579 - MIR SINE MIR -31 231 180 1855 153 33 0 chr1 49630774 49631048 -193033305 + AluJb SINE Alu 18 300 -12 2404 86 0 3 chr1 49631048 49631348 -193033005 + AluSp SINE Alu 1 300 -13 711 265 84 37 chr1 49631348 49631506 -193032847 - MIR SINE MIR -81 181 7 638 247 23 15 chr1 49631634 49631819 -193032534 - MIR SINE MIR -36 172 9 191 326 45 38 chr1 49631812 49631944 -193032409 + L2 LINE L2 2922 3054 -218 * 244 275 44 11 chr1 49632072 49632163 -193032190 - L2 LINE L2 -671 2643 2550 2225 105 7 0 chr1 49632234 49632530 -193031823 + AluSq SINE Alu 2 299 -14 4685 162 32 28 chr1 49632591 49633720 -193030633 + L1MB7 LINE L1 4974 6115 -69 2178 136 7 0 chr1 49633720 49634021 -193030332 - AluJb SINE Alu -9 303 1 4685 162 32 28 chr1 49634021 49634092 -193030261 + L1MB7 LINE L1 6115 6184 0 362 250 116 89 chr1 49634092 49634183 -193030170 + L1ME4a LINE L1 5861 5948 -173 2356 96 13 0 chr1 49634183 49634486 -193029867 - AluSx SINE Alu -5 307 1 362 250 116 89 chr1 49634486 49634618 -193029735 + L1ME4a LINE L1 5948 6090 -31 2210 86 65 0 chr1 49635039 49635331 -193029022 + AluY SINE Alu 1 311 0 2085 147 0 3 chr1 49635421 49635721 -193028632 - AluJo SINE Alu -13 299 1 559 235 154 39 chr1 49635764 49635998 -193028355 + MIR SINE MIR 2 262 0 639 253 99 12 chr1 49636048 49636301 -193028052 - L1ME4a LINE L1 -193 5928 5654 433 283 152 11 chr1 49636356 49636540 -193027813 + MIR SINE MIR 24 233 -29 2498 80 3 0 chr1 49636676 49636976 -193027377 - AluSp SINE Alu -12 301 1 419 152 139 0 chr1 49637265 49637344 -193027009 - 5S rRNA rRNA -31 90 1 766 222 0 7 chr1 49638359 49638494 -193025859 + AluJo SINE Alu 2 135 -177 2341 103 0 0 chr1 49638525 49638817 -193025536 + AluSx SINE Alu 1 292 -20 228 274 236 0 chr1 49639107 49639213 -193025140 + L3 LINE CR1 1179 1309 -268 340 276 204 25 chr1 49639371 49639567 -193024786 + L3 LINE CR1 1332 1562 -15 427 103 26 26 chr1 49639588 49639666 -193024687 + Alu SINE Alu 223 300 -11 535 287 75 13 chr1 49639706 49639915 -193024438 - MIR SINE MIR -21 241 26 197 235 107 80 chr1 49640152 49640339 -193024014 - L2 LINE L2 -549 2765 2574 588 276 25 12 chr1 49640565 49640728 -193023625 - MIR SINE MIR -85 177 13 330 26 0 0 chr1 49641826 49641865 -193022488 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 1925 138 17 20 chr1 49642258 49642555 -193021798 + AluJo SINE Alu 2 297 -15 2336 95 0 0 chr1 49642556 49642851 -193021502 + AluSx SINE Alu 1 295 -17 3098 307 155 20 chr1 49642879 49645073 -193019280 - L2 LINE L2 -663 2651 162 567 328 28 11 chr1 49646695 49646872 -193017481 - L2 LINE L2 -3 3269 3090 2089 102 33 0 chr1 49647045 49647352 -193017001 - AluSg SINE Alu 0 316 1 201 337 12 23 chr1 49647600 49647686 -193016667 - L2 LINE L2 -1850 1464 1380 280 337 174 5 chr1 49647688 49647872 -193016481 + L2 LINE L2 2454 2668 -646 2567 54 0 3 chr1 49647875 49648173 -193016180 - AluY SINE Alu -14 297 1 1031 202 5 5 chr1 49648173 49648361 -193015992 + AluJo SINE Alu 102 289 -23 378 316 99 0 chr1 49648850 49649002 -193015351 + L2 LINE L2 3106 3272 0 192 380 0 0 chr1 49649058 49649129 -193015224 - L2 LINE L2 -9 3263 3193 1089 298 156 45 chr1 49649438 49649522 -193014831 - L2 LINE L2 -541 2773 2700 2109 125 0 44 chr1 49649522 49649842 -193014511 + AluJo SINE Alu 1 306 -6 1089 298 156 45 chr1 49649842 49650597 -193013756 - L2 LINE L2 -614 2700 1841 459 312 75 23 chr1 49650564 49650737 -193013616 + MIR SINE MIR 7 188 -74 * 895 137 0 0 chr1 49650749 49650880 -193013473 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr1 49651114 49651135 -193013218 + AT_rich Low_complexity Low_complexity 1 21 0 490 329 66 84 chr1 49651220 49651885 -193012468 + HAL1 LINE L1 23 675 -1832 509 234 170 0 chr1 49651973 49652161 -193012192 + HAL1 LINE L1 1300 1519 -988 1694 161 27 34 chr1 49652191 49652489 -193011864 - AluJo SINE Alu -16 296 1 2679 62 0 0 chr1 49652496 49652804 -193011549 - AluSc SINE Alu -1 308 1 932 269 89 53 chr1 49652887 49653273 -193011080 + HAL1 LINE L1 1715 2085 -422 2164 134 0 0 chr1 49653273 49653572 -193010781 + AluSx SINE Alu 2 300 -12 932 269 89 53 chr1 49653572 49653674 -193010679 + HAL1 LINE L1 2085 2182 -325 1102 178 0 0 chr1 49653674 49653848 -193010505 + FAM SINE Alu 2 175 0 932 269 89 53 chr1 49653848 49653926 -193010427 + HAL1 LINE L1 2182 2256 -251 2520 154 3 0 chr1 49653926 49654315 -193010038 - MLT1B LTR MaLR 0 390 1 932 269 89 53 chr1 49654315 49654429 -193009924 + HAL1 LINE L1 2256 2422 -85 289 213 98 0 chr1 49654461 49654522 -193009831 - MIR SINE MIR -183 79 13 2192 104 16 7 chr1 49655932 49656241 -193008112 - AluSx SINE Alu 0 312 1 2431 90 0 0 chr1 49656818 49657118 -193007235 + AluSg SINE Alu 3 302 -8 761 311 119 75 chr1 49657216 49657552 -193006801 + L2 LINE L2 1403 1723 -1591 1873 134 87 0 chr1 49657552 49657829 -193006524 - AluSg SINE Alu -7 303 3 761 311 119 75 chr1 49657829 49657856 -193006497 + L2 LINE L2 1723 1747 -1567 2239 81 7 0 chr1 49657856 49658140 -193006213 + AluSx SINE Alu 1 286 -26 761 311 119 75 chr1 49658140 49658654 -193005699 + L2 LINE L2 1747 2320 -994 258 351 60 0 chr1 49658656 49658790 -193005563 - L2 LINE L2 -850 2464 2323 889 223 0 0 chr1 49658992 49659149 -193005204 + FRAM SINE Alu 6 162 -14 705 297 60 63 chr1 49659149 49659449 -193004904 + L2 LINE L2 2972 3270 -2 1756 161 0 34 chr1 49659606 49659921 -193004432 - AluJo SINE Alu 0 305 1 462 247 82 71 chr1 49659922 49660104 -193004249 - MER5A DNA MER1_type -5 184 1 708 155 37 91 chr1 49660275 49660322 -193004031 + MER96B DNA MER1_type? 241 289 -128 1663 176 6 42 chr1 49660322 49660634 -193003719 - AluJo SINE Alu -11 301 1 708 155 37 91 chr1 49660634 49660773 -193003580 + MER96B DNA MER1_type? 289 417 0 266 381 62 11 chr1 49660847 49661023 -193003330 + L2 LINE L2 3087 3271 -1 2474 88 0 19 chr1 49661376 49661694 -193002659 - AluSx SINE Alu 0 312 1 463 311 139 5 chr1 49661694 49661903 -193002450 - MIR SINE MIR -16 246 10 717 277 45 17 chr1 49661999 49662232 -193002121 + MIR SINE MIR 5 241 -21 748 172 8 22 chr1 49662386 49662520 -193001833 + FLAM_C SINE Alu 2 133 0 2013 151 0 17 chr1 49662541 49662840 -193001513 + AluJo SINE Alu 6 299 -13 609 199 14 85 chr1 49664247 49664458 -192999895 - MLT1K LTR MaLR -3 585 390 323 315 8 16 chr1 49664502 49664629 -192999724 - MLT1K LTR MaLR -289 299 174 2325 102 0 7 chr1 49665407 49665710 -192998643 + AluSp SINE Alu 1 301 -12 1069 96 7 0 chr1 49665744 49665879 -192998474 + AluSq/x SINE Alu 1 136 -176 2270 96 6 16 chr1 49665879 49666192 -192998161 + AluSg SINE Alu 1 310 0 412 268 58 22 chr1 49666208 49666326 -192998027 - L2 LINE L2 -21 3292 3167 2247 117 0 7 chr1 49666326 49666626 -192997727 - AluSx SINE Alu -10 302 5 412 268 58 22 chr1 49666626 49666645 -192997708 - L2 LINE L2 -146 3167 3150 2347 110 0 0 chr1 49666698 49667007 -192997346 - AluSx SINE Alu -2 310 2 316 305 63 0 chr1 49667080 49667175 -192997178 + MIR SINE MIR 108 208 -54 2261 104 0 3 chr1 49667214 49667513 -192996840 + AluSc SINE Alu 1 298 -11 2008 141 17 0 chr1 49668525 49668815 -192995538 + AluSx SINE Alu 1 295 -17 1126 139 0 29 chr1 49668818 49668991 -192995362 + AluJo SINE Alu 123 290 -22 469 276 69 57 chr1 49669039 49669285 -192995068 - MIR SINE MIR -12 250 2 2537 85 3 0 chr1 49669310 49669617 -192994736 + AluSg SINE Alu 1 308 -2 2031 115 3 21 chr1 49670319 49670605 -192993748 + AluSx SINE Alu 1 281 -31 * 2418 70 23 0 chr1 49670604 49670904 -192993449 - AluY SINE Alu -4 307 1 1993 163 0 0 chr1 49671396 49671690 -192992663 - AluJo SINE Alu -18 294 1 2561 67 0 3 chr1 49671713 49672013 -192992340 - AluY SINE Alu -12 299 1 234 192 178 0 chr1 49672014 49672087 -192992266 - MIR SINE MIR -13 249 164 2179 131 0 7 chr1 49672087 49672392 -192991961 + AluSx SINE Alu 1 303 -9 333 252 150 16 chr1 49672474 49672601 -192991752 - MIR SINE MIR -102 160 17 219 378 29 6 chr1 49672690 49672862 -192991491 - L2 LINE L2 -214 3058 2883 261 0 0 0 chr1 49674126 49674155 -192990198 + (TGAG)n Simple_repeat Simple_repeat 1 29 0 255 293 155 0 chr1 49674193 49674309 -192990044 + L2 LINE L2 3134 3267 -5 1711 185 28 0 chr1 49674313 49674600 -192989753 - AluJo SINE Alu -17 295 1 187 208 0 75 chr1 49674814 49674867 -192989486 + L2 LINE L2 3224 3272 0 304 258 0 0 chr1 49675285 49675347 -192989006 - L2 LINE L2 -5 3267 3206 309 264 189 31 chr1 49675621 49675848 -192988505 + L2 LINE L2 1441 1703 -1611 229 98 49 0 chr1 49675859 49675900 -192988453 + L1MC5 LINE L1 7493 7535 -426 265 253 243 0 chr1 49675981 49676183 -192988170 + L2 LINE L2 1939 2189 -1125 319 216 159 0 chr1 49676183 49676271 -192988082 + L2 LINE L2 2308 2409 -905 2374 82 3 0 chr1 49676272 49676566 -192987787 + AluY SINE Alu 4 298 -13 1206 94 6 6 chr1 49676566 49676725 -192987628 + AluSg/x SINE Alu 132 290 -20 2743 55 0 0 chr1 49677206 49677517 -192986836 + AluY SINE Alu 1 311 0 4774 146 68 18 chr1 49677559 49678550 -192985803 - L1MB5 LINE L1 -1 6173 5129 245 302 79 0 chr1 49678567 49678630 -192985723 - L2 LINE L2 -45 3227 3160 954 240 31 0 chr1 49678692 49678917 -192985436 - MIR SINE MIR -28 234 3 877 135 113 7 chr1 49678985 49679055 -192985298 + AluSx SINE Alu 18 79 -233 2025 122 4 0 chr1 49679055 49679334 -192985019 + AluSq SINE Alu 1 280 -33 877 135 113 7 chr1 49679334 49679404 -192984949 + AluSx SINE Alu 79 173 -139 198 0 0 0 chr1 49679414 49679436 -192984917 + (A)n Simple_repeat Simple_repeat 1 22 0 2343 118 0 0 chr1 49679533 49679837 -192984516 - AluSx SINE Alu -3 309 6 466 95 0 0 chr1 49679900 49679963 -192984390 - Alu SINE Alu -17 293 231 2155 139 7 0 chr1 49679976 49680277 -192984076 - AluSx SINE Alu -9 303 1 2411 54 30 7 chr1 49680874 49681171 -192983182 + AluY SINE Alu 1 304 -7 2524 64 3 0 chr1 49681182 49681479 -192982874 + AluSp SINE Alu 1 298 -15 1079 161 115 21 chr1 49681555 49681747 -192982606 - AluJb SINE Alu -21 291 82 715 190 43 37 chr1 49681761 49681924 -192982429 - FRAM SINE Alu -13 163 1 308 346 81 7 chr1 49682223 49682359 -192981994 + MIR3 SINE MIR 63 208 0 2312 107 0 10 chr1 49682442 49682741 -192981612 - AluSx SINE Alu -16 296 1 277 253 101 0 chr1 49682744 49682823 -192981530 + L2 LINE L2 3225 3311 -2 195 332 79 29 chr1 49682845 49683122 -192981231 + L2 LINE L2 1933 2223 -1091 465 253 137 0 chr1 49683150 49683296 -192981057 - MIR SINE MIR 0 262 97 336 334 171 18 chr1 49683291 49683671 -192980682 + L2 LINE L2 2256 2693 -621 * 362 329 99 6 chr1 49683675 49683720 -192980633 + MIR SINE MIR 2 41 -221 2351 108 0 0 chr1 49683720 49684027 -192980326 - AluSg SINE Alu -3 307 1 362 329 99 6 chr1 49684027 49684142 -192980211 + MIR SINE MIR 41 177 -85 273 307 51 76 chr1 49684278 49684594 -192979759 + L2 LINE L2 2965 3272 0 2207 118 10 3 chr1 49685621 49685926 -192978427 + AluSp SINE Alu 1 307 -6 2512 81 0 7 chr1 49686791 49687099 -192977254 + AluSq SINE Alu 1 306 -7 220 297 93 17 chr1 49687324 49687442 -192976911 - L2 LINE L2 -9 3304 3178 250 273 52 0 chr1 49687547 49687624 -192976729 - L2 LINE L2 -216 3056 2976 2324 109 0 3 chr1 49687632 49687954 -192976399 + AluSx SINE Alu 1 312 0 438 306 101 25 chr1 49688059 49688386 -192975967 + L1MEd LINE L1 481 832 -5287 467 204 0 0 chr1 49688502 49688590 -192975763 + AluJb SINE Alu 178 265 -47 652 123 0 18 chr1 49688664 49688778 -192975575 - U5 snRNA snRNA -1 115 4 1026 151 0 68 chr1 49689151 49689356 -192974997 + AluJo SINE Alu 3 193 -119 1718 96 65 19 chr1 49689373 49689633 -192974720 + AluSq SINE Alu 33 304 -9 2343 58 0 55 chr1 49689658 49689967 -192974386 + AluSg SINE Alu 3 294 -16 183 250 58 0 chr1 49690186 49690238 -192974115 + L2 LINE L2 3234 3288 -25 368 278 131 0 chr1 49690377 49690553 -192973800 + MIR SINE MIR 59 257 -5 532 223 0 0 chr1 49692465 49692577 -192971776 + FLAM_A SINE Alu 9 120 -22 2273 88 3 47 chr1 49692579 49692898 -192971455 + AluSx SINE Alu 1 305 -7 940 171 17 11 chr1 49693161 49693337 -192971016 + LTR28 LTR ERV1 2 178 -842 * 1241 189 88 92 chr1 49693305 49693749 -192970604 + LTR27 LTR ERV1 188 629 -7 656 67 0 0 chr1 49693924 49694013 -192970340 - AluSc SINE Alu -3 306 218 1481 103 0 0 chr1 49694013 49694198 -192970155 - AluSg1 SINE Alu -124 185 1 1989 138 13 20 chr1 49694198 49694502 -192969851 - AluJb SINE Alu -9 303 1 1169 240 207 77 chr1 49694523 49694972 -192969381 + L2 LINE L2 2077 2466 -847 2091 160 0 3 chr1 49694972 49695284 -192969069 - AluSx SINE Alu -1 311 1 1169 240 207 77 chr1 49695284 49695520 -192968833 + L2 LINE L2 2466 2670 -643 2558 58 0 13 chr1 49695520 49695830 -192968523 + AluY SINE Alu 1 306 -5 1169 240 207 77 chr1 49695830 49696106 -192968247 + L2 LINE L2 2670 3225 -88 2415 75 3 13 chr1 49696375 49696710 -192967643 - AluSg SINE Alu 0 310 1 392 0 21 0 chr1 49696716 49696764 -192967589 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 2217 71 4 21 chr1 49696768 49697049 -192967304 - AluSx SINE Alu -32 280 5 229 258 0 0 chr1 49697077 49697143 -192967210 + T-rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr1 49697251 49697272 -192967081 + AT_rich Low_complexity Low_complexity 1 21 0 658 165 17 0 chr1 49697314 49697429 -192966924 + FRAM SINE Alu 39 155 -21 212 54 54 0 chr1 49697436 49697473 -192966880 + A-rich Low_complexity Low_complexity 2 40 0 1044 173 126 0 chr1 49697478 49697669 -192966684 + AluSg SINE Alu 7 221 -89 635 172 0 9 chr1 49697824 49697940 -192966413 - U5 snRNA snRNA -1 115 1 21 0 0 0 chr1 49698320 49698341 -192966012 + AT_rich Low_complexity Low_complexity 1 21 0 2351 78 10 3 chr1 49698364 49698660 -192965693 + AluSc SINE Alu 1 298 -11 226 305 38 29 chr1 49698702 49698807 -192965546 - MLT1J LTR MaLR -19 492 387 518 256 73 37 chr1 49698818 49699080 -192965273 + MER39 LTR ERV1 6 471 -236 2297 72 14 3 chr1 49699082 49699372 -192964981 - AluY SINE Alu -17 294 2 2063 158 0 0 chr1 49699373 49699676 -192964677 - AluJo SINE Alu -9 303 1 1756 97 55 4 chr1 49699861 49700098 -192964255 + AluSg SINE Alu 49 297 -13 517 237 37 133 chr1 49700123 49700477 -192963876 - MLT1J LTR MaLR -88 423 104 351 251 87 105 chr1 49700586 49700805 -192963548 - L1MDb LINE L1 -5064 1345 1131 2065 108 69 14 chr1 49700809 49701097 -192963256 - AluSq SINE Alu -9 304 1 1853 156 0 4 chr1 49701157 49701432 -192962921 + AluSq SINE Alu 1 274 -39 942 114 8 0 chr1 49701437 49701568 -192962785 + AluSg/x SINE Alu 160 291 -19 2191 103 7 0 chr1 49701974 49702265 -192962088 - AluY SINE Alu -18 293 1 1906 152 14 24 chr1 49702265 49702562 -192961791 - AluSx SINE Alu -18 294 1 1864 179 0 7 chr1 49702566 49702867 -192961486 - AluJo SINE Alu -13 299 1 1202 230 92 32 chr1 49702867 49703236 -192961117 - MSTD LTR MaLR -5 391 1 2161 285 74 35 chr1 49703251 49704107 -192960246 + L2 LINE L2 1821 2725 -589 2497 91 3 0 chr1 49704107 49704415 -192959938 + AluSp SINE Alu 1 309 -4 2161 285 74 35 chr1 49704415 49704579 -192959774 + L2 LINE L2 2725 2881 -433 412 147 73 0 chr1 49704606 49704674 -192959679 + AluS SINE Alu 2 74 -235 384 161 0 0 chr1 49704680 49704742 -192959611 + AluJ/FLAM SINE Alu 1 62 -240 884 159 0 0 chr1 49754743 49754875 -192909478 - FRAM SINE Alu -52 124 1 2115 119 3 0 chr1 49754884 49755177 -192909176 - AluSx SINE Alu -18 294 1 302 291 77 8 chr1 49755190 49755307 -192909046 + L2 LINE L2 1764 1888 -1426 * 304 254 6 133 chr1 49755303 49755333 -192909020 + L2 LINE L2 3156 3188 -125 2166 129 0 3 chr1 49755333 49755643 -192908710 - AluSx SINE Alu -3 309 1 304 254 6 133 chr1 49755643 49755716 -192908637 + L2 LINE L2 3188 3269 -44 2013 125 0 49 chr1 49755716 49756043 -192908310 - AluSx SINE Alu -1 311 1 2223 87 10 10 chr1 49756047 49756347 -192908006 - AluSq SINE Alu -9 304 5 304 254 6 133 chr1 49756347 49756418 -192907935 + L2 LINE L2 3272 3313 0 216 178 0 22 chr1 49756978 49757023 -192907330 + G-rich Low_complexity Low_complexity 3 46 0 512 286 41 6 chr1 49758948 49759119 -192905234 - MIR SINE MIR -1 261 85 356 119 1 0 chr1 49760578 49760651 -192903702 + Alu SINE Alu 1 47 -255 1072 99 93 0 chr1 49760652 49760813 -192903540 + AluSg/x SINE Alu 127 302 -10 1663 162 0 75 chr1 49763634 49763967 -192900386 - AluJo SINE Alu -4 308 1 347 42 0 0 chr1 49764001 49764049 -192900304 - AluY SINE Alu -252 49 2 673 149 0 0 chr1 49764049 49764143 -192900210 - AluJ/FLAM SINE Alu -218 94 1 2273 83 0 10 chr1 49764328 49764628 -192899725 - AluSq SINE Alu -16 297 1 416 253 169 7 chr1 49764997 49765151 -192899202 + MIR SINE MIR 84 262 0 1971 120 50 0 chr1 49765279 49765562 -192898791 - AluJb SINE Alu -15 297 1 245 326 137 15 chr1 49765575 49765845 -192898508 + L1ME LINE L1 5347 5649 -472 257 209 191 18 chr1 49765848 49765958 -192898395 - L2 LINE L2 -521 2793 2665 651 249 28 28 chr1 49766279 49766528 -192897825 + MLT1L LTR MaLR 42 290 -325 1558 160 49 49 chr1 49766538 49766633 -192897720 + AluJo SINE Alu 4 98 -214 2088 112 10 29 chr1 49766633 49766946 -192897407 + AluSg SINE Alu 1 307 -3 1558 160 49 49 chr1 49766946 49766979 -192897374 + AluJo SINE Alu 98 130 -182 228 35 0 0 chr1 49766979 49767008 -192897345 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1558 160 49 49 chr1 49767008 49767185 -192897168 + AluJo SINE Alu 129 310 -2 518 286 107 39 chr1 49767210 49767444 -192896909 + MLT1L LTR MaLR 357 606 -9 1997 135 10 3 chr1 49767457 49767760 -192896593 - AluSx SINE Alu -7 305 1 815 159 0 35 chr1 49767760 49767905 -192896448 - FLAM_C SINE Alu -3 140 1 2221 86 0 13 chr1 49768003 49768306 -192896047 + AluY SINE Alu 2 300 -11 1976 100 4 0 chr1 49768477 49768746 -192895607 - AluSq SINE Alu -43 270 1 2064 108 22 29 chr1 49768920 49769234 -192895119 - AluSx SINE Alu 0 312 1 1972 98 45 7 chr1 49769310 49769597 -192894756 + AluSg SINE Alu 13 310 0 1717 103 8 0 chr1 49770307 49770550 -192893803 - AluSg SINE Alu -11 299 55 2499 53 0 0 chr1 49770651 49770953 -192893400 - AluY SINE Alu -9 302 1 1951 123 7 19 chr1 49770953 49771261 -192893092 - AluSx SINE Alu -7 305 2 2068 113 0 3 chr1 49771275 49771566 -192892787 - AluSq SINE Alu -18 295 6 503 244 34 54 chr1 49771571 49771776 -192892577 - HAL1 LINE L1 -175 2332 2132 * 1096 251 80 58 chr1 49771745 49771946 -192892407 - HAL1 LINE L1 -172 2335 2140 2265 90 0 7 chr1 49771946 49772247 -192892106 + AluSx SINE Alu 1 299 -13 1096 251 80 58 chr1 49772247 49772583 -192891770 - HAL1 LINE L1 -367 2140 1786 2065 109 0 16 chr1 49772596 49772900 -192891453 - AluSc SINE Alu -10 299 1 733 119 9 0 chr1 49772909 49773018 -192891335 - AluSg/x SINE Alu -5 304 195 253 288 0 0 chr1 49773025 49773105 -192891248 - HAL1 LINE L1 -739 1768 1689 7108 118 13 11 chr1 49773120 49774769 -192889584 - L1MA2 LINE L1 0 6304 4652 1778 118 32 25 chr1 49774780 49775093 -192889260 - AluSx SINE Alu 0 315 1 1837 123 20 0 chr1 49775726 49776018 -192888335 - AluSx SINE Alu -14 298 1 198 103 0 0 chr1 49776029 49776058 -192888295 + (T)n Simple_repeat Simple_repeat 1 29 0 256 304 13 0 chr1 49776319 49776398 -192887955 + L2 LINE L2 2638 2717 -597 1813 161 3 0 chr1 49776577 49776875 -192887478 - AluJb SINE Alu -13 299 1 298 200 114 0 chr1 49777117 49777187 -192887166 + LTR33 LTR ERVL 442 519 -2 558 196 9 9 chr1 49777396 49777508 -192886845 - L1ME LINE L1 -461 5660 5549 1683 120 75 0 chr1 49777738 49778004 -192886349 + AluJo SINE Alu 6 291 -21 1851 123 3 23 chr1 49778763 49779065 -192885288 - AluJb SINE Alu -16 296 1 192 116 93 23 chr1 49779339 49779382 -192884971 + MIR SINE MIR 181 226 -36 2157 95 0 3 chr1 49779705 49779999 -192884354 - AluSq SINE Alu -19 294 2 196 179 39 90 chr1 49780149 49780227 -192884126 - MIR3 SINE MIR -132 76 3 341 317 112 12 chr1 49781541 49781702 -192882651 - MIR3 SINE MIR -13 195 19 2323 78 0 0 chr1 49783243 49783538 -192880815 - AluSq SINE Alu -18 295 1 182 357 124 5 chr1 49783693 49783903 -192880450 - L2 LINE L2 -226 3046 2812 372 164 45 0 chr1 49783913 49783980 -192880373 + MIR SINE MIR 127 196 -66 198 289 121 0 chr1 49784034 49784117 -192880236 + L2 LINE L2 2794 2886 -428 1986 97 3 52 chr1 49784127 49784436 -192879917 - AluSx SINE Alu -18 294 1 2158 102 3 3 chr1 49784671 49784974 -192879379 + AluSq SINE Alu 2 304 -9 197 303 30 0 chr1 49784985 49785051 -192879302 + L2 LINE L2 3168 3235 -37 398 365 63 17 chr1 49785064 49785412 -192878941 - L2 LINE L2 -2487 827 464 1620 168 17 3 chr1 49785502 49785794 -192878559 + AluJb SINE Alu 1 296 -16 2195 103 3 0 chr1 49786168 49786468 -192877885 - AluSx SINE Alu -3 309 9 2205 97 3 3 chr1 49786763 49787061 -192877292 - AluSp SINE Alu -15 298 1 196 292 45 67 chr1 49787629 49787718 -192876635 - L2 LINE L2 0 3272 3186 2171 115 0 0 chr1 49787734 49788030 -192876323 - AluSx SINE Alu -16 296 1 295 275 58 70 chr1 49788333 49788406 -192875947 - MIR SINE MIR -66 196 124 1795 171 0 13 chr1 49788406 49788722 -192875631 + AluSx SINE Alu 1 312 0 295 275 58 70 chr1 49788722 49788819 -192875534 - MIR SINE MIR -138 124 28 1500 174 69 0 chr1 49788980 49789255 -192875098 - AluJo SINE Alu -13 299 6 483 286 30 14 chr1 49789345 49789423 -192874930 - L1MC/D LINE L1 -468 5653 5578 2113 95 14 3 chr1 49789423 49789717 -192874636 + AluSp SINE Alu 2 298 -15 483 286 30 14 chr1 49789717 49789827 -192874526 - L1MC/D LINE L1 -543 5578 5482 1026 132 30 12 chr1 49790245 49790412 -192873941 - FRAM SINE Alu -11 165 1 1915 129 28 0 chr1 49790652 49790939 -192873414 - AluSx SINE Alu -17 295 1 653 231 16 0 chr1 49790946 49791067 -192873286 - FLAM_A SINE Alu -10 123 1 1654 170 0 7 chr1 49791191 49791473 -192872880 + AluJb SINE Alu 1 280 -32 2135 131 0 3 chr1 49791549 49791863 -192872490 + AluSq SINE Alu 1 313 0 225 271 0 0 chr1 49791867 49791915 -192872438 - MIR SINE MIR -4 258 211 1600 100 0 5 chr1 49791955 49792175 -192872178 - AluSx SINE Alu -36 276 58 597 168 197 22 chr1 49792179 49792316 -192872037 - FRAM SINE Alu -5 161 1 1074 149 0 0 chr1 49792330 49792491 -192871862 - AluJ SINE Alu -18 294 134 383 311 83 8 chr1 49792688 49792820 -192871533 - MIR SINE MIR -117 145 4 348 302 29 58 chr1 49794739 49794799 -192869554 - MIR SINE MIR -6 256 196 1747 114 103 4 chr1 49794799 49795071 -192869282 - AluSg SINE Alu -11 299 1 348 302 29 58 chr1 49795071 49795182 -192869171 - MIR SINE MIR -66 196 90 36 23 0 0 chr1 49795535 49795578 -192868775 + AT_rich Low_complexity Low_complexity 1 43 0 786 171 8 0 chr1 49795584 49795707 -192868646 - AluJ SINE Alu -187 125 2 1988 115 11 0 chr1 49796458 49796745 -192867608 + AluSx SINE Alu 2 291 -21 480 219 7 103 chr1 49797007 49797110 -192867243 - HAL1b LINE L1 -836 512 427 2217 97 7 3 chr1 49797110 49797408 -192866945 + AluSx SINE Alu 1 299 -13 480 219 7 103 chr1 49797408 49797459 -192866894 - HAL1b LINE L1 -921 427 373 707 209 84 145 chr1 49797724 49797757 -192866596 - HAL1b LINE L1 -713 635 602 1693 155 40 7 chr1 49797757 49798054 -192866299 + AluJb SINE Alu 1 307 -5 707 209 84 145 chr1 49798054 49798431 -192865922 - HAL1b LINE L1 -746 602 253 2061 118 3 3 chr1 49798431 49798737 -192865616 + AluSp SINE Alu 2 307 -6 707 209 84 145 chr1 49798737 49798779 -192865574 - HAL1b LINE L1 -1095 253 210 632 246 38 111 chr1 49798806 49798974 -192865379 - HAL1 LINE L1 -10 2497 2318 2506 50 0 0 chr1 49798974 49799275 -192865078 - AluY SINE Alu -10 301 1 1935 124 7 20 chr1 49799275 49799581 -192864772 - AluSx SINE Alu -9 303 2 632 246 38 111 chr1 49799581 49799595 -192864758 - HAL1 LINE L1 -188 2319 2306 2068 113 0 3 chr1 49799595 49799886 -192864467 - AluSq SINE Alu -18 295 6 632 246 38 111 chr1 49799886 49800096 -192864257 - HAL1 LINE L1 -201 2306 2132 354 264 119 15 chr1 49800065 49800266 -192864087 - HAL1 LINE L1 -172 2335 2114 * 2078 113 3 7 chr1 49800266 49800568 -192863785 + AluSx SINE Alu 1 301 -11 35 41 0 0 chr1 49800611 49800660 -192863693 + AT_rich Low_complexity Low_complexity 1 49 0 1415 135 9 132 chr1 49800796 49800960 -192863393 - AluSx SINE Alu -20 292 188 2279 73 0 7 chr1 49800960 49801260 -192863093 - AluY SINE Alu -13 298 1 1415 135 9 132 chr1 49801260 49801428 -192862925 - AluSx SINE Alu -124 188 1 1974 127 0 13 chr1 49801510 49801809 -192862544 - AluJo SINE Alu -17 295 1 1973 139 7 0 chr1 49801948 49802249 -192862104 + AluSx SINE Alu 1 303 -9 871 203 0 0 chr1 49802433 49802596 -192861757 + FRAM SINE Alu 1 163 -13 1311 170 3 113 chr1 49802596 49802925 -192861428 + AluJo SINE Alu 1 293 -19 2321 68 0 0 chr1 49803360 49803654 -192860699 + AluY SINE Alu 3 296 -15 1616 145 6 85 chr1 49804529 49804847 -192859506 - AluJo SINE Alu -19 293 1 836 130 0 30 chr1 49805936 49805950 -192858403 - FLAM_C SINE Alu -184 128 115 240 35 0 0 chr1 49805950 49805979 -192858374 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 836 130 0 30 chr1 49805979 49806095 -192858258 - FLAM_C SINE Alu -197 115 2 24 0 0 0 chr1 49806630 49806654 -192857699 + AT_rich Low_complexity Low_complexity 1 24 0 1726 135 0 44 chr1 49806934 49807259 -192857094 - AluSq SINE Alu 0 312 1 210 306 185 9 chr1 49807451 49807559 -192856794 + L2 LINE L2 3133 3259 -13 1805 172 7 3 chr1 49808230 49808538 -192855815 + AluJo SINE Alu 1 309 -3 261 267 122 28 chr1 49808539 49808719 -192855634 + HAL1 LINE L1 2304 2500 -7 1950 154 0 3 chr1 49808773 49809078 -192855275 - AluSx SINE Alu -8 304 1 355 291 0 8 chr1 49809174 49809308 -192855045 + L2 LINE L2 733 865 -2449 * 417 219 105 9 chr1 49809305 49809419 -192854934 - L2 LINE L2 0 3313 3189 * 1825 276 82 37 chr1 49809409 49809882 -192854471 + L2 LINE L2 857 1308 -2006 2128 100 0 17 chr1 49809882 49810045 -192854308 - AluSx SINE Alu -16 296 139 2736 13 0 3 chr1 49810045 49810356 -192853997 - AluYa5 SINE Alu -1 310 1 2128 100 0 17 chr1 49810356 49810493 -192853860 - AluSx SINE Alu -173 139 1 1825 276 82 37 chr1 49810493 49810650 -192853703 + L2 LINE L2 1308 1523 -1791 2453 41 7 0 chr1 49810650 49810944 -192853409 - AluY SINE Alu -15 296 1 1825 276 82 37 chr1 49810944 49811011 -192853342 + L2 LINE L2 1523 1586 -1728 304 256 80 40 chr1 49810999 49811124 -192853229 + L2 LINE L2 3182 3311 -2 * 217 256 44 33 chr1 49811131 49811221 -192853132 + L2 LINE L2 1613 1703 -1611 517 283 105 19 chr1 49811362 49811589 -192852764 + L2 LINE L2 1698 1951 -1363 1763 141 0 52 chr1 49811589 49811895 -192852458 + AluJb SINE Alu 2 291 -21 517 283 105 19 chr1 49811895 49811925 -192852428 + L2 LINE L2 1951 1977 -1337 248 290 90 0 chr1 49812081 49812236 -192852117 + L1MC4a LINE L1 2289 2457 -3689 6353 85 27 1 chr1 49812297 49813180 -192851173 - L1PA7 LINE L1 -1454 4692 3787 6859 46 37 5 chr1 49813180 49814592 -192849761 + L1PA7 LINE L1 4708 6152 -2 201 147 0 0 chr1 49814716 49814750 -192849603 + (TA)n Simple_repeat Simple_repeat 1 34 0 401 263 45 28 chr1 49814801 49815075 -192849278 + L1MC4a LINE L1 4882 5168 -978 1624 173 7 17 chr1 49815075 49815376 -192848977 + AluJb SINE Alu 1 298 -14 401 263 45 28 chr1 49815376 49815414 -192848939 + L1MC4a LINE L1 5168 5204 -942 1245 191 146 85 chr1 49815432 49815605 -192848748 + L1MC4a LINE L1 5274 5435 -2373 2004 126 0 0 chr1 49815605 49815890 -192848463 + AluSx SINE Alu 15 299 -13 1245 191 146 85 chr1 49815890 49816197 -192848156 + L1MC4a LINE L1 5435 5783 -2025 884 174 0 23 chr1 49817490 49817662 -192846691 + AluJo SINE Alu 122 289 -23 21 36 0 0 chr1 49818157 49818185 -192846168 + AT_rich Low_complexity Low_complexity 1 28 0 1190 214 49 55 chr1 49818328 49818470 -192845883 - MER2 DNA MER2_type 0 344 203 2210 76 3 7 chr1 49818470 49818771 -192845582 + AluSg SINE Alu 1 300 -10 1190 214 49 55 chr1 49818771 49818974 -192845379 - MER2 DNA MER2_type -141 203 1 28 29 0 0 chr1 49819094 49819129 -192845224 + AT_rich Low_complexity Low_complexity 1 35 0 1440 135 90 11 chr1 49819183 49819450 -192844903 + AluJo SINE Alu 16 303 -9 347 135 0 0 chr1 49819451 49819498 -192844855 + L1MC4a LINE L1 5830 5876 -1932 1071 155 24 45 chr1 49819498 49819709 -192844644 + AluJo SINE Alu 1 199 -113 302 346 54 8 chr1 49819710 49819840 -192844513 + L2 LINE L2 3172 3307 -6 309 299 42 69 chr1 49819855 49819999 -192844354 - MIR3 SINE MIR -66 142 3 1936 115 3 30 chr1 49820024 49820329 -192844024 + AluSx SINE Alu 2 298 -14 1610 176 4 0 chr1 49820372 49820651 -192843702 - AluJb SINE Alu -32 280 1 1646 177 59 3 chr1 49820655 49820977 -192843376 - L1MA7 LINE L1 -354 5937 5598 830 238 0 11 chr1 49820992 49821173 -192843180 - AluJb SINE Alu -3 309 131 1764 149 0 14 chr1 49821477 49821765 -192842588 + AluJb SINE Alu 1 284 -28 201 121 0 0 chr1 49822047 49822080 -192842273 + (CA)n Simple_repeat Simple_repeat 2 34 0 370 309 122 0 chr1 49822334 49822473 -192841880 - L2 LINE L2 -4 3268 3113 2174 163 9 144 chr1 49822535 49822806 -192841547 + Charlie1a DNA MER1_type 1 307 -2454 797 203 52 0 chr1 49822806 49822959 -192841394 + FRAM SINE Alu 1 161 -5 2022 115 17 0 chr1 49822961 49823249 -192841104 + AluSx SINE Alu 1 293 -19 2309 76 3 25 chr1 49823251 49823568 -192840785 + AluY SINE Alu 1 310 -1 2174 163 9 144 chr1 49823568 49823655 -192840698 + Charlie1a DNA MER1_type 309 406 -2355 2340 95 0 0 chr1 49823655 49823959 -192840394 - AluSg SINE Alu -6 304 1 2174 163 9 144 chr1 49823959 49824176 -192840177 + Charlie1a DNA MER1_type 406 504 -951 2986 188 178 16 chr1 49824808 49824897 -192839456 + Charlie1a DNA MER1_type 559 632 -2129 2307 81 0 3 chr1 49824897 49825205 -192839148 - AluY SINE Alu -4 307 1 2986 188 178 16 chr1 49825205 49825765 -192838588 + Charlie1a DNA MER1_type 632 1355 -1406 2218 83 3 3 chr1 49825765 49826055 -192838298 + AluSp SINE Alu 1 290 -23 2986 188 178 16 chr1 49826055 49826176 -192838177 + Charlie1a DNA MER1_type 1355 1455 0 308 167 39 90 chr1 49826571 49826649 -192837704 + L2 LINE L2 3231 3304 -9 664 198 8 0 chr1 49826661 49826782 -192837571 + FLAM_A SINE Alu 12 133 -9 2002 104 17 0 chr1 49826886 49827175 -192837178 + AluSc SINE Alu 1 294 -15 332 219 14 0 chr1 49827252 49827325 -192837028 - MLT1H1 LTR MaLR 0 555 482 1576 190 14 0 chr1 49827345 49827640 -192836713 - AluJb SINE Alu -3 299 1 2011 79 3 120 chr1 49828297 49828639 -192835714 - AluSx SINE Alu 0 302 1 1627 140 25 14 chr1 49828774 49829052 -192835301 - AluJo SINE Alu -31 281 1 2417 27 0 13 chr1 49829112 49829443 -192834910 + AluY SINE Alu 1 327 0 194 301 0 41 chr1 49830086 49830159 -192834194 - MIR3 SINE MIR -19 189 120 1040 104 0 13 chr1 49830163 49830317 -192834036 + AluSg/x SINE Alu 161 312 0 185 375 69 14 chr1 49831106 49831250 -192833103 - L2 LINE L2 -212 3060 2909 2783 7 0 0 chr1 49831337 49831645 -192832708 + AluYb8 SINE Alu 1 308 -10 880 267 9 14 chr1 49831649 49831866 -192832487 - MIR SINE MIR -39 223 8 225 260 40 25 chr1 49831874 49831961 -192832392 - MIR SINE MIR -80 128 39 1654 125 106 0 chr1 49831961 49832225 -192832128 - AluJb SINE Alu -19 293 2 1875 107 0 61 chr1 49832238 49832435 -192831918 - AluSx SINE Alu -5 307 136 2035 104 21 3 chr1 49832435 49832724 -192831629 + AluSq SINE Alu 1 294 -19 1875 107 0 61 chr1 49832724 49832853 -192831500 - AluSx SINE Alu -176 136 1 1567 161 13 45 chr1 49833229 49833373 -192830980 + AluJb SINE Alu 1 148 -164 2174 102 0 23 chr1 49833373 49833678 -192830675 + AluSp SINE Alu 1 298 -15 1567 161 13 45 chr1 49833678 49833844 -192830509 + AluJb SINE Alu 148 301 -11 2039 94 11 0 chr1 49833850 49834136 -192830217 + AluSq SINE Alu 5 293 -20 1881 147 0 22 chr1 49834470 49834789 -192829564 - AluJb SINE Alu 0 312 1 275 343 34 82 chr1 49834826 49835033 -192829320 + L2 LINE L2 2981 3177 -95 231 291 47 12 chr1 49835787 49835873 -192828480 - L2 LINE L2 -36 3236 3148 1985 95 0 49 chr1 49835956 49836260 -192828093 - AluSc SINE Alu -20 289 1 1920 129 0 7 chr1 49836482 49836761 -192827592 - AluSx SINE Alu -35 277 1 1208 178 7 84 chr1 49836769 49837056 -192827297 - AluJb SINE Alu -15 297 33 1411 137 160 11 chr1 49837176 49837439 -192826914 - AluJb SINE Alu 0 302 1 1223 181 40 4 chr1 49837576 49837824 -192826529 - AluSx SINE Alu -55 257 1 2080 117 17 0 chr1 49838022 49838313 -192826040 + AluSx SINE Alu 1 296 -16 394 269 74 0 chr1 49838338 49838446 -192825907 + L1ME2 LINE L1 5913 6028 -136 233 108 0 0 chr1 49838764 49838801 -192825552 - L1ME1 LINE L1 -4 6162 6126 * 1769 212 95 6 chr1 49838768 49839759 -192824594 - L1ME2 LINE L1 -9 6155 5049 1584 150 9 84 chr1 49839760 49840093 -192824260 - AluSx SINE Alu -4 308 1 225 156 67 0 chr1 49840098 49840143 -192824210 - L1ME2 LINE L1 -1588 4558 4511 2084 110 59 0 chr1 49840145 49840491 -192823862 + MER7A DNA MER2_type 2 346 0 781 204 156 36 chr1 49840495 49840555 -192823798 - L1ME2 LINE L1 -1639 4507 4456 1589 157 24 20 chr1 49840555 49840849 -192823504 - AluJo SINE Alu -17 295 1 781 204 156 36 chr1 49840849 49841096 -192823257 - L1ME2 LINE L1 -1690 4456 4163 891 151 12 48 chr1 49841114 49841280 -192823073 - AluJo/FRAM SINE Alu -19 293 134 1615 168 10 13 chr1 49841280 49841590 -192822763 - AluJb SINE Alu -3 309 1 243 158 0 0 chr1 49841608 49841646 -192822707 - L1ME2 LINE L1 -1994 4152 4115 3478 149 28 10 chr1 49841843 49842059 -192822294 - L1MB3 LINE L1 -55 6128 5917 1573 158 0 23 chr1 49842059 49842325 -192822028 - AluSx SINE Alu -11 301 42 3478 149 28 10 chr1 49842325 49842711 -192821642 - L1MB3 LINE L1 -266 5917 5515 1103 202 5 14 chr1 49842711 49842934 -192821419 - AluJb SINE Alu 0 312 92 994 180 0 0 chr1 49842936 49843103 -192821250 + AluSg/x SINE Alu 120 286 -23 306 0 0 0 chr1 49843124 49843158 -192821195 + (TG)n Simple_repeat Simple_repeat 2 35 0 2273 90 3 0 chr1 49843159 49843459 -192820894 - AluSp SINE Alu -10 303 3 480 117 0 0 chr1 49843472 49843549 -192820804 + (TG)n Simple_repeat Simple_repeat 2 78 0 961 104 8 0 chr1 49843550 49843675 -192820678 - FLAM_C SINE Alu -7 126 1 496 167 26 88 chr1 49843678 49843723 -192820630 - L1MB3 LINE L1 -645 5526 5480 2175 104 3 7 chr1 49843723 49844031 -192820322 - AluSg SINE Alu -3 307 1 496 167 26 88 chr1 49844031 49844099 -192820254 - L1MB3 LINE L1 -691 5480 5420 2111 66 48 3 chr1 49844391 49844680 -192819673 - AluY SINE Alu -9 302 1 1555 189 154 78 chr1 49846034 49846690 -192817663 - L1MC5 LINE L1 -51 7910 7205 645 333 23 67 chr1 49846770 49846871 -192817482 - HAL1b LINE L1 -785 563 459 2256 75 14 0 chr1 49846871 49847165 -192817188 - AluSq SINE Alu -15 298 1 645 333 23 67 chr1 49847165 49847396 -192816957 - HAL1b LINE L1 -889 459 244 1507 186 13 16 chr1 49847396 49847702 -192816651 - AluJb SINE Alu -7 305 1 645 333 23 67 chr1 49847702 49847713 -192816640 - HAL1b LINE L1 -1104 244 234 2208 110 0 0 chr1 49847715 49848025 -192816328 - AluSg SINE Alu 0 310 1 1082 142 0 20 chr1 49848025 49848222 -192816131 + AluSg/x SINE Alu 113 305 -5 1654 125 106 0 chr1 49848235 49848499 -192815854 + AluJb SINE Alu 2 293 -19 216 263 41 26 chr1 49848499 49848585 -192815768 + MIR SINE MIR 39 127 -81 309 324 0 0 chr1 49848593 49848667 -192815686 + MIR SINE MIR 6 79 -183 1474 122 27 0 chr1 49849092 49849313 -192815040 + AluSc SINE Alu 66 292 -17 2382 84 0 0 chr1 49849672 49849983 -192814370 - AluY SINE Alu 0 311 1 192 261 87 14 chr1 49850098 49850167 -192814186 - MIR SINE MIR -188 74 1 2231 108 0 0 chr1 49850201 49850506 -192813847 + AluSx SINE Alu 1 305 -7 276 103 0 0 chr1 49850829 49850868 -192813485 - L1MB7 LINE L1 -50 6134 6096 244 254 60 30 chr1 49851390 49851457 -192812896 + MIR SINE MIR 86 154 -108 1855 152 0 13 chr1 49852571 49852874 -192811479 + AluJo SINE Alu 1 299 -13 252 335 201 24 chr1 49852888 49853142 -192811211 + L2 LINE L2 2973 3271 -1 685 273 82 5 chr1 49853164 49853358 -192810995 - MER63A DNA MER1_type -1 209 1 1867 251 67 26 chr1 49853384 49853791 -192810562 - HAL1 LINE L1 -3 2504 2115 1360 131 12 45 chr1 49853791 49853835 -192810518 - MER46A DNA MER2_type -2495 236 192 2219 100 0 28 chr1 49853835 49854156 -192810197 - AluSx SINE Alu 0 312 1 1360 131 12 45 chr1 49854156 49854355 -192809998 - MER46A DNA MER2_type -2539 192 1 1867 251 67 26 chr1 49854355 49854865 -192809488 - HAL1 LINE L1 -392 2115 1518 521 100 0 0 chr1 49855348 49855418 -192808935 + Alu SINE Alu 232 301 -10 5245 70 61 23 chr1 49855957 49856952 -192807401 + SVA Other Other 1 866 -571 5673 29 0 3 chr1 49857379 49858028 -192806325 + SVA Other Other 740 1386 0 2286 100 0 0 chr1 49859081 49859382 -192804971 - AluSx SINE Alu -11 301 1 1761 156 0 27 chr1 49859577 49859878 -192804475 - AluJb SINE Alu -17 295 3 448 309 165 33 chr1 49859911 49860183 -192804170 + L2 LINE L2 200 507 -2807 872 167 0 0 chr1 49860902 49861034 -192803319 - FLAM_A SINE Alu -1 132 1 190 203 0 116 chr1 49861346 49861415 -192802938 + MIR3 SINE MIR 9 69 -139 * 419 284 98 71 chr1 49861406 49861500 -192802853 - MIR SINE MIR -74 188 98 2400 53 3 0 chr1 49861500 49861801 -192802552 + AluY SINE Alu 1 302 -9 419 284 98 71 chr1 49861801 49861889 -192802464 - MIR SINE MIR -164 98 1 298 287 11 35 chr1 49861895 49861982 -192802371 - L2 LINE L2 -4 3309 3225 224 313 271 0 chr1 49862933 49863029 -192801324 - L2 LINE L2 -4 3268 3147 892 131 29 0 chr1 49863117 49863254 -192801099 + LTR8A LTR ERV1 1 141 -586 1009 106 6 78 chr1 49863258 49863438 -192800915 - AluSg/x SINE Alu -12 298 132 1908 138 10 3 chr1 49863438 49863734 -192800619 - AluSx SINE Alu -14 298 1 1932 134 3 28 chr1 49863737 49864057 -192800296 - AluSx SINE Alu 0 312 1 2533 155 90 43 chr1 49864070 49864625 -192799728 + LTR8A LTR ERV1 147 727 0 1917 150 0 0 chr1 49864665 49864958 -192799395 - AluJo SINE Alu -19 293 1 312 318 91 11 chr1 49864958 49865127 -192799226 - L2 LINE L2 -561 2753 2568 534 259 119 72 chr1 49866153 49866572 -192797781 + L1ME4a LINE L1 5408 5806 -315 1924 92 44 44 chr1 49866572 49866865 -192797488 - AluSg SINE Alu -17 293 1 534 259 119 72 chr1 49866865 49866920 -192797433 + L1ME4a LINE L1 5806 5857 -264 1892 100 50 7 chr1 49866920 49867200 -192797153 - AluSg SINE Alu -18 292 1 534 259 119 72 chr1 49867200 49867319 -192797034 + L1ME4a LINE L1 5857 6030 -91 2850 124 11 16 chr1 49867321 49867757 -192796596 + MER57B LTR ERV1 1 434 0 6153 115 45 11 chr1 49867757 49868479 -192795874 + MER57B-int LTR ERV1 1 764 -6773 1593 114 149 20 chr1 49868479 49868734 -192795619 + AluSg1 SINE Alu 1 288 -21 6153 115 45 11 chr1 49868734 49868945 -192795408 + MER57B-int LTR ERV1 764 966 -6571 * 6219 128 56 21 chr1 49868938 49869296 -192795057 + MER41-int LTR ERV1 723 1067 -4879 243 0 0 0 chr1 49869296 49869323 -192795030 + (TC)n Simple_repeat Simple_repeat 2 28 0 6219 128 56 21 chr1 49869323 49870074 -192794279 + MER41-int LTR ERV1 1067 1975 -3971 2104 132 0 3 chr1 49870074 49870370 -192793983 + AluSx SINE Alu 1 295 -17 1470 116 35 0 chr1 49870451 49870649 -192793704 - AluSx SINE Alu -107 205 1 279 57 0 0 chr1 49870649 49870684 -192793669 + MER41-int LTR ERV1 2595 2629 -4908 * 941 116 0 0 chr1 49870680 49870809 -192793544 + MER41-int LTR ERV1 2781 2909 -4628 4331 92 58 14 chr1 49870809 49871443 -192792910 + MER41-int LTR ERV1 2405 3066 -2880 1293 179 8 17 chr1 49871443 49871678 -192792675 + LTR47B LTR ERVL 211 443 0 467 335 29 10 chr1 49871684 49871893 -192792460 + L2 LINE L2 2473 2685 -629 1645 119 15 122 chr1 49871911 49872247 -192792106 - AluJo SINE Alu -12 300 1 456 248 28 28 chr1 49872373 49872518 -192791835 + L1ME3A LINE L1 5968 6112 -58 869 167 0 0 chr1 49872727 49872859 -192791494 - FLAM_C SINE Alu -11 132 1 363 271 43 29 chr1 49872859 49872999 -192791354 - MIR SINE MIR -118 144 3 1956 124 3 23 chr1 49873118 49873417 -192790936 + AluJo SINE Alu 1 293 -19 949 152 0 51 chr1 49873873 49874051 -192790302 - AluJ SINE Alu -10 302 134 357 269 163 0 chr1 49874325 49874466 -192789887 + MIR SINE MIR 78 241 -21 191 125 25 0 chr1 49876351 49876391 -192787962 + (TA)n Simple_repeat Simple_repeat 2 42 0 689 185 21 130 chr1 49876415 49876653 -192787700 + L1MC5 LINE L1 7702 7913 -48 410 248 25 25 chr1 49876918 49877039 -192787314 + L2 LINE L2 3192 3312 -1 2136 130 10 0 chr1 49878559 49878859 -192785494 - AluSx SINE Alu -9 303 1 427 284 100 66 chr1 49879031 49879302 -192785051 + L2 LINE L2 2993 3272 0 1658 166 6 51 chr1 49879501 49879815 -192784538 - AluJo SINE Alu -12 300 1 669 206 40 0 chr1 49879817 49879943 -192784410 - AluJ SINE Alu -180 132 2 246 62 0 0 chr1 49879952 49879984 -192784369 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 676 260 0 73 chr1 49879984 49880167 -192784186 - L1MB7 LINE L1 -12 6172 6010 5186 125 29 33 chr1 49880167 49880988 -192783365 + L1PA16 LINE L1 5154 5972 -194 2047 143 3 0 chr1 49880988 49881289 -192783064 + AluSx SINE Alu 3 304 -8 5186 125 29 33 chr1 49881289 49881480 -192782873 + L1PA16 LINE L1 5972 6162 -4 676 260 0 73 chr1 49881480 49881542 -192782811 - L1MB7 LINE L1 -174 6010 5945 1012 157 52 13 chr1 49881546 49881775 -192782578 - L1MB7 LINE L1 -704 5474 5264 1371 169 70 50 chr1 49881776 49881941 -192782412 - AluJo SINE Alu -5 307 132 2352 98 0 0 chr1 49881941 49882236 -192782117 - AluSq SINE Alu -18 295 1 1371 169 70 50 chr1 49882236 49882371 -192781982 - AluJo SINE Alu -180 132 1 1915 146 7 10 chr1 49882371 49882680 -192781673 - AluJb SINE Alu -4 308 1 1793 246 15 7 chr1 49882747 49883206 -192781147 - L1MB7 LINE L1 -1112 5034 4572 653 154 0 32 chr1 49883225 49883348 -192781005 + FRAM SINE Alu 58 176 0 1885 166 0 22 chr1 49883360 49883679 -192780674 + AluJo SINE Alu 1 312 0 2169 122 6 10 chr1 49884616 49884927 -192779426 + AluSx SINE Alu 1 310 -2 2499 72 0 0 chr1 49885344 49885636 -192778717 - AluY SINE Alu -19 292 1 485 229 134 69 chr1 49886138 49886369 -192777984 + MLT2F LTR ERVL 400 645 -18 1052 170 5 5 chr1 49886478 49886666 -192777687 - MLT2C1 LTR ERVL -209 188 1 433 163 11 43 chr1 49886987 49887079 -192777274 + MLT1H LTR MaLR 65 153 -396 2317 68 7 4 chr1 49887242 49887521 -192776832 - AluSq SINE Alu -31 282 3 788 291 158 9 chr1 49887633 49888100 -192776253 + L2 LINE L2 2214 2750 -564 2244 108 0 0 chr1 49888101 49888396 -192775957 + AluSc SINE Alu 1 295 -14 789 200 21 53 chr1 49888418 49888442 -192775911 + MLT1H LTR MaLR 5 28 -521 2362 71 37 0 chr1 49888442 49888739 -192775614 + AluSp SINE Alu 1 308 -5 789 200 21 53 chr1 49888739 49888904 -192775449 + MLT1H LTR MaLR 28 188 -361 374 309 104 58 chr1 49889006 49889284 -192775069 - L2 LINE L2 -6 3266 2976 231 289 0 26 chr1 49889953 49890029 -192774324 + GA-rich Low_complexity Low_complexity 3 76 0 1153 248 21 17 chr1 49890064 49890354 -192773999 + HAL1 LINE L1 4 294 -2213 497 209 108 23 chr1 49890345 49890474 -192773879 + HAL1 LINE L1 615 754 -1753 * 409 209 87 43 chr1 49891030 49891145 -192773208 - MIR3 SINE MIR -16 192 73 920 108 0 43 chr1 49891464 49891603 -192772750 - FLAM_C SINE Alu 0 133 1 782 111 17 0 chr1 49891678 49891795 -192772558 - L1PB1 LINE L1 -3 6148 6030 208 0 62 0 chr1 49892507 49892539 -192771814 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3980 5 2 0 chr1 49892540 49892977 -192771376 - L1PA3 LINE L1 -11 6144 5707 192 357 119 0 chr1 49893766 49893892 -192770461 + MIR3 SINE MIR 62 202 -6 387 118 0 140 chr1 49893898 49893991 -192770362 - MADE1 DNA Mariner 0 80 1 256 194 32 48 chr1 49894269 49894331 -192770022 + MER58 DNA MER1_type 3 63 -161 1482 170 40 22 chr1 49894346 49894622 -192769731 - AluJo SINE Alu -31 281 1 1766 165 7 14 chr1 49894654 49894951 -192769402 - AluSq SINE Alu -18 295 1 2251 113 3 3 chr1 49894983 49895283 -192769070 - AluSq SINE Alu -13 300 1 266 71 0 24 chr1 49895481 49895523 -192768830 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 2297 87 0 3 chr1 49895523 49895810 -192768543 - AluSg SINE Alu -24 286 1 731 119 9 0 chr1 49895819 49895928 -192768425 - AluSg/x SINE Alu -5 304 195 256 288 0 0 chr1 49895935 49896015 -192768338 - HAL1 LINE L1 -739 1768 1689 1825 104 27 14 chr1 49896029 49896326 -192768027 - L1MA3 LINE L1 0 6305 6005 6374 66 37 7 chr1 49896427 49897296 -192767057 + L1PA7 LINE L1 5258 6152 -2 201 147 0 0 chr1 49897420 49897454 -192766899 + (TA)n Simple_repeat Simple_repeat 1 34 0 1339 108 0 54 chr1 49897654 49897857 -192766496 - AluSq SINE Alu -121 192 1 2142 114 4 0 chr1 49897868 49898175 -192766178 - AluSx SINE Alu 0 308 1 2401 87 3 7 chr1 49898178 49898487 -192765866 - AluSq SINE Alu -5 308 1 234 154 0 0 chr1 49898502 49898541 -192765812 - Alu SINE Alu -11 291 253 1501 170 41 0 chr1 49898562 49898856 -192765497 + L1MA7 LINE L1 5984 6289 -2 2321 74 7 0 chr1 49898874 49899186 -192765167 + AluSp SINE Alu 1 314 0 523 225 8 8 chr1 49899194 49899314 -192765039 - MIR SINE MIR -134 128 9 2333 97 29 29 chr1 49899389 49899607 -192764746 + L1MA2 LINE L1 5923 6140 -164 2207 104 18 0 chr1 49899607 49899887 -192764466 + AluSx SINE Alu 1 285 -27 198 0 0 0 chr1 49899887 49899909 -192764444 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 2333 97 29 29 chr1 49899909 49900071 -192764282 + L1MA2 LINE L1 6138 6304 0 1800 144 12 38 chr1 49900084 49900403 -192763950 + AluJb SINE Alu 1 311 -1 2408 75 3 0 chr1 49900417 49900711 -192763642 + AluSp SINE Alu 1 295 -18 557 270 74 21 chr1 49900855 49901044 -192763309 + MIR SINE MIR 29 227 -35 319 289 181 38 chr1 49901101 49901367 -192762986 + L1ME LINE L1 5281 5584 -537 275 287 15 46 chr1 49901379 49901574 -192762779 + L1ME LINE L1 5636 5824 -297 2204 71 4 0 chr1 49901577 49901843 -192762510 + AluSx SINE Alu 1 267 -45 22 0 0 0 chr1 49901850 49901872 -192762481 + AT_rich Low_complexity Low_complexity 1 22 0 371 291 43 35 chr1 49902262 49902403 -192761950 + L2 LINE L2 3171 3312 -1 1714 158 25 0 chr1 49902997 49903282 -192761071 - AluJb SINE Alu -16 296 5 1236 193 41 4 chr1 49903305 49903549 -192760804 + AluJo SINE Alu 16 268 -44 234 0 0 0 chr1 49903552 49903578 -192760775 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 928 92 8 0 chr1 49905353 49905473 -192758880 - AluSq/x SINE Alu -187 125 5 931 197 6 6 chr1 49905479 49905645 -192758708 - AluJb SINE Alu -11 301 133 2280 98 7 26 chr1 49905645 49905951 -192758402 - AluSq SINE Alu -13 300 1 931 197 6 6 chr1 49905951 49905967 -192758386 - AluJb SINE Alu -178 134 119 923 173 17 17 chr1 49905988 49906167 -192758186 + Charlie1 DNA MER1_type 1632 1810 -951 608 146 0 0 chr1 49906799 49906895 -192757458 + Charlie1 DNA MER1_type 1865 1960 -801 2423 81 0 3 chr1 49906898 49907206 -192757147 - AluY SINE Alu -4 307 1 3281 145 55 59 chr1 49907565 49908165 -192756188 + L1MB2 LINE L1 5507 6108 -63 2132 111 7 3 chr1 49908165 49908454 -192755899 + AluSg SINE Alu 1 290 -20 3281 145 55 59 chr1 49908454 49908468 -192755885 + L1MB2 LINE L1 6108 6121 -50 2357 88 7 10 chr1 49908468 49908763 -192755590 + AluSx SINE Alu 1 296 -16 223 57 0 29 chr1 49908763 49908798 -192755555 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 2357 88 7 10 chr1 49908798 49908809 -192755544 + AluSx SINE Alu 296 306 -6 3281 145 55 59 chr1 49908809 49908850 -192755503 + L1MB2 LINE L1 6121 6160 -11 2469 71 0 7 chr1 49909374 49909683 -192754670 + AluY SINE Alu 5 311 0 1186 118 6 29 chr1 49909684 49909854 -192754499 + AluSg/x SINE Alu 127 292 -18 1794 164 136 24 chr1 49909886 49910269 -192754084 - MSTB LTR MaLR 0 426 1 662 204 123 32 chr1 49910312 49910532 -192753821 + L1MC4 LINE L1 7672 7911 -131 1544 197 43 0 chr1 49910586 49910865 -192753488 + AluJb SINE Alu 1 291 -21 2217 95 3 10 chr1 49910867 49911161 -192753192 + AluSx SINE Alu 1 292 -20 954 197 42 5 chr1 49911582 49911795 -192752558 + MIR SINE MIR 1 221 -41 198 71 0 0 chr1 49912852 49912880 -192751473 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 407 207 69 0 chr1 49912939 49913026 -192751327 + L1M4 LINE L1 3624 3716 -2430 961 272 17 31 chr1 49913050 49913338 -192751015 + MLT1H LTR MaLR 5 331 -218 2241 109 20 0 chr1 49913345 49913639 -192750714 - AluSx SINE Alu -12 300 1 1896 224 149 10 chr1 49913688 49914171 -192750182 + MLT1E LTR MaLR 30 579 -14 462 284 17 8 chr1 49914191 49914328 -192750025 + MLT1H LTR MaLR 421 542 -7 228 231 19 0 chr1 49914329 49914381 -192749972 + L1M4 LINE L1 3766 3818 -2328 536 196 38 8 chr1 49914397 49914530 -192749823 + L1M4 LINE L1 3880 4016 -2130 1275 197 22 0 chr1 49914540 49914763 -192749590 + AluSq SINE Alu 2 229 -84 1775 123 6 41 chr1 49914881 49914970 -192749383 - L1 LINE L1 -1488 4658 4567 2392 98 0 0 chr1 49914970 49915276 -192749077 + AluSx SINE Alu 1 306 -6 1775 123 6 41 chr1 49915276 49915502 -192748851 - L1 LINE L1 -1579 4567 4354 1232 138 0 0 chr1 49915502 49915683 -192748670 - AluSg/x SINE Alu -3 309 129 1673 158 18 0 chr1 49915683 49915961 -192748392 - L1 LINE L1 -1786 4360 4078 995 240 207 15 chr1 49915947 49916343 -192748010 - HAL1 LINE L1 -801 1706 1235 * 189 107 0 0 chr1 49916429 49916457 -192747896 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 827 163 0 0 chr1 49916459 49916588 -192747765 - AluJb SINE Alu -2 310 182 2564 75 0 0 chr1 49916597 49916905 -192747448 - AluY SINE Alu -3 308 1 2068 115 48 0 chr1 49917056 49917351 -192747002 - AluSc SINE Alu 0 309 1 3275 144 55 61 chr1 49917710 49918310 -192746043 + L1MB2 LINE L1 5507 6109 -62 2132 111 7 3 chr1 49918310 49918599 -192745754 + AluSg SINE Alu 1 290 -20 3275 144 55 61 chr1 49918599 49918613 -192745740 + L1MB2 LINE L1 6109 6122 -49 2340 88 7 10 chr1 49918613 49918909 -192745444 + AluSx SINE Alu 1 297 -15 236 51 0 26 chr1 49918909 49918948 -192745405 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3275 144 55 61 chr1 49918956 49918998 -192745355 + L1MB2 LINE L1 6122 6160 -11 2023 109 3 17 chr1 49919522 49919816 -192744537 + AluSx SINE Alu 5 294 -18 1799 164 136 24 chr1 49919848 49920231 -192744122 - MSTB LTR MaLR 0 426 1 674 206 123 27 chr1 49920274 49920493 -192743860 + L1MC4 LINE L1 7672 7911 -131 1470 190 43 0 chr1 49920547 49920826 -192743527 + AluJb SINE Alu 1 291 -21 2090 95 3 10 chr1 49920828 49921122 -192743231 + AluSx SINE Alu 1 292 -20 1022 215 50 8 chr1 49921543 49921785 -192742568 + MIR SINE MIR 1 252 -10 198 71 0 0 chr1 49922813 49922841 -192741512 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 406 207 69 0 chr1 49922900 49922987 -192741366 + L1M4 LINE L1 3624 3716 -2430 970 272 17 31 chr1 49923011 49923299 -192741054 + MLT1H LTR MaLR 5 331 -218 2119 109 20 0 chr1 49923306 49923600 -192740753 - AluSx SINE Alu -12 300 1 1896 224 149 10 chr1 49923649 49924132 -192740221 + MLT1E LTR MaLR 30 579 -14 460 284 17 8 chr1 49924152 49924289 -192740064 + MLT1H LTR MaLR 421 542 -7 228 231 19 0 chr1 49924290 49924342 -192740011 + L1M4 LINE L1 3766 3818 -2328 868 229 45 65 chr1 49924345 49924501 -192739852 + L1M4 LINE L1 3859 4016 -2130 1667 169 25 0 chr1 49924501 49924779 -192739574 + AluSx SINE Alu 2 286 -26 216 0 0 0 chr1 49924782 49924806 -192739547 + (CA)n Simple_repeat Simple_repeat 2 25 0 868 229 45 65 chr1 49924806 49924955 -192739398 + L1M4 LINE L1 4018 4162 -1984 605 176 78 0 chr1 49924988 49925090 -192739263 + 5S rRNA rRNA 1 110 -11 207 0 0 0 chr1 49925092 49925115 -192739238 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 840 86 57 21 chr1 49925125 49925265 -192739088 + L1MA8 LINE L1 6007 6151 -140 1826 238 72 39 chr1 49925269 49925401 -192738952 + HAL1 LINE L1 1413 1539 -968 261 0 0 0 chr1 49925401 49925430 -192738923 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1826 238 72 39 chr1 49925430 49926312 -192738041 + HAL1 LINE L1 1539 2507 0 319 250 12 25 chr1 49926329 49926409 -192737944 + MIR SINE MIR 20 98 -164 2099 88 4 0 chr1 49926506 49926780 -192737573 + AluSp SINE Alu 1 275 -38 1942 123 0 7 chr1 49926781 49927089 -192737264 + AluSg SINE Alu 1 306 0 26 30 0 0 chr1 49927122 49927155 -192737198 + AT_rich Low_complexity Low_complexity 1 33 0 2203 99 10 13 chr1 49927155 49927469 -192736884 - AluSq SINE Alu 0 313 1 2072 114 3 7 chr1 49928167 49928466 -192735887 - AluSx SINE Alu -14 298 1 2080 100 0 37 chr1 49928963 49929263 -192735090 + AluSx SINE Alu 1 289 -23 445 276 134 43 chr1 49929477 49929709 -192734644 - MIR SINE MIR 0 262 10 544 261 39 0 chr1 49929962 49930092 -192734261 - L2 LINE L2 -7 3306 3172 2657 19 0 3 chr1 49930267 49930579 -192733774 + AluY SINE Alu 1 311 0 618 186 0 97 chr1 49931033 49931144 -192733209 + FLAM_A SINE Alu 3 123 -179 207 0 0 0 chr1 49931144 49931167 -192733186 + (TC)n Simple_repeat Simple_repeat 2 24 0 1512 161 43 18 chr1 49931168 49931448 -192732905 - AluJb SINE Alu -21 291 5 618 186 0 97 chr1 49931448 49931479 -192732874 + FLAM_A SINE Alu 122 133 -169 1906 147 0 13 chr1 49931481 49931795 -192732558 + AluJb SINE Alu 1 310 -2 292 158 49 49 chr1 49932002 49932084 -192732269 + L1MC4 LINE L1 6936 7017 -1025 1011 144 19 5 chr1 49932125 49932333 -192732020 + L1MA7 LINE L1 6081 6291 0 1091 133 6 0 chr1 49933151 49933317 -192731036 + AluSg SINE Alu 1 167 -143 2176 86 0 0 chr1 49933608 49933888 -192730465 - AluSg SINE Alu -30 280 1 283 312 43 21 chr1 49934053 49934146 -192730207 + L2 LINE L2 3173 3267 -5 237 269 0 0 chr1 49934982 49935034 -192729319 + L2 LINE L2 3262 3313 0 369 0 0 0 chr1 49935081 49935122 -192729231 + (TA)n Simple_repeat Simple_repeat 2 42 0 2021 153 0 0 chr1 49935122 49935430 -192728923 - AluJb SINE Alu -1 311 4 277 265 15 0 chr1 49935473 49935541 -192728812 - MIR SINE MIR 0 262 194 2205 67 0 7 chr1 49935541 49935862 -192728491 - AluY SINE Alu 0 319 1 39 0 0 0 chr1 49935862 49935901 -192728452 + AT_rich Low_complexity Low_complexity 1 39 0 710 125 23 94 chr1 49935901 49936029 -192728324 - FLAM_C SINE Alu -23 120 2 1974 127 0 13 chr1 49936112 49936411 -192727942 - AluJo SINE Alu -17 295 1 192 291 101 0 chr1 49936416 49936495 -192727858 - MIR SINE MIR -107 155 69 1987 136 7 0 chr1 49936551 49936852 -192727501 + AluSx SINE Alu 1 303 -9 524 248 0 0 chr1 49937036 49937149 -192727204 + FRAM SINE Alu 1 113 -63 348 302 29 58 chr1 49938007 49938067 -192726286 - MIR SINE MIR -6 256 196 1747 114 103 4 chr1 49938067 49938339 -192726014 - AluSg SINE Alu -11 299 1 348 302 29 58 chr1 49938339 49938450 -192725903 - MIR SINE MIR -66 196 90 37 23 0 0 chr1 49938803 49938847 -192725506 + AT_rich Low_complexity Low_complexity 1 44 0 786 171 8 0 chr1 49938853 49938976 -192725377 - FLAM_C SINE Alu -18 125 2 1988 115 11 0 chr1 49939727 49940014 -192724339 + AluSx SINE Alu 2 291 -21 480 219 7 103 chr1 49940276 49940379 -192723974 - HAL1b LINE L1 -836 512 427 2217 97 7 3 chr1 49940379 49940677 -192723676 + AluSx SINE Alu 1 299 -13 480 219 7 103 chr1 49940677 49940728 -192723625 - HAL1b LINE L1 -921 427 373 1890 106 53 3 chr1 49941027 49941311 -192723042 - AluSp SINE Alu -15 298 1 29 0 0 0 chr1 49941326 49941355 -192722998 + AT_rich Low_complexity Low_complexity 1 29 0 1974 135 0 7 chr1 49941559 49941863 -192722490 + AluSg SINE Alu 1 302 -8 2178 108 0 0 chr1 49942002 49942298 -192722055 - AluSx SINE Alu -16 296 1 1027 174 20 35 chr1 49943280 49943481 -192720872 + AluJo SINE Alu 85 282 -30 2481 71 0 0 chr1 49943560 49943868 -192720485 + AluY SINE Alu 1 308 -3 781 152 7 51 chr1 49943939 49944077 -192720276 - FLAM_C SINE Alu -1 132 1 237 316 13 13 chr1 49944334 49944410 -192719943 + MIR3 SINE MIR 125 200 -8 21 0 0 0 chr1 49944589 49944610 -192719743 + AT_rich Low_complexity Low_complexity 1 21 0 2032 126 7 0 chr1 49944638 49944932 -192719421 + AluSx SINE Alu 1 296 -16 425 198 50 0 chr1 49944932 49945033 -192719320 - MIR SINE MIR -54 208 103 1119 118 0 28 chr1 49945036 49945214 -192719139 - AluSg/x SINE Alu -9 303 131 217 254 51 34 chr1 49945232 49945291 -192719062 - MIR SINE MIR -182 80 21 1137 200 171 0 chr1 49945382 49945622 -192718731 + AluSg SINE Alu 5 285 -15 279 0 0 0 chr1 49945622 49945653 -192718700 + (GA)n Simple_repeat Simple_repeat 2 32 0 268 287 126 24 chr1 49945690 49945857 -192718496 + L2 LINE L2 2243 2426 -888 404 302 114 90 chr1 49945857 49946100 -192718253 + L2 LINE L2 1983 2219 -1095 1885 115 14 17 chr1 49946100 49946395 -192717958 - AluSg SINE Alu -16 294 1 404 302 114 90 chr1 49946395 49946996 -192717357 + L2 LINE L2 2219 2847 -467 566 283 196 11 chr1 49947017 49947282 -192717071 - L2 LINE L2 0 3313 3000 821 195 92 0 chr1 49947322 49947486 -192716867 - AluSg/x SINE Alu -9 303 125 1551 206 0 0 chr1 49947495 49947781 -192716572 - AluJb SINE Alu -26 286 1 235 337 0 21 chr1 49951259 49951354 -192712999 + L2 LINE L2 2568 2660 -654 22 0 0 0 chr1 49954004 49954026 -192710327 + AT_rich Low_complexity Low_complexity 1 22 0 253 277 92 35 chr1 49954804 49954945 -192709408 + L2 LINE L2 3165 3313 0 232 315 14 28 chr1 49956945 49957088 -192707265 + (CATA)n Simple_repeat Simple_repeat 4 144 0 250 320 21 0 chr1 49957209 49957306 -192707047 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 1840 64 4 0 chr1 49960755 49960989 -192703364 - AluY SINE Alu -18 293 59 2236 100 3 0 chr1 49961451 49961760 -192702593 + AluSq SINE Alu 1 310 -3 2075 100 7 3 chr1 49961763 49962052 -192702301 + AluSq SINE Alu 1 290 -23 592 192 42 0 chr1 49962053 49962173 -192702180 + Charlie1 DNA MER1_type 2637 2761 0 309 147 40 93 chr1 49962571 49962646 -192701707 + L2 LINE L2 3234 3304 -9 649 207 8 0 chr1 49962658 49962779 -192701574 + FLAM_A SINE Alu 12 133 -9 1885 114 18 0 chr1 49962883 49963163 -192701190 + AluSc SINE Alu 1 285 -24 1448 178 7 0 chr1 49963360 49963629 -192700724 - AluJb SINE Alu -41 271 1 2390 70 0 0 chr1 49964788 49965088 -192699265 - AluY SINE Alu -11 300 1 336 283 26 59 chr1 49965090 49965242 -192699111 + L1ME4a LINE L1 5910 6056 -65 638 113 284 0 chr1 49965251 49965392 -192698961 - L1MC2 LINE L1 0 6344 6164 1163 188 148 30 chr1 49965396 49965699 -192698654 + MER2 DNA MER2_type 7 345 0 4217 173 36 98 chr1 49965708 49966836 -192697517 - L1MC2 LINE L1 -135 6603 5407 2230 93 0 6 chr1 49966836 49967149 -192697204 - AluSx SINE Alu -1 311 1 4217 173 36 98 chr1 49967149 49967312 -192697041 - L1MC2 LINE L1 -1331 5407 5236 2208 103 0 0 chr1 49967312 49967612 -192696741 - AluSx SINE Alu -12 300 1 4217 173 36 98 chr1 49967612 49968449 -192695904 - L1MC2 LINE L1 -1502 5236 4349 256 250 0 0 chr1 49968449 49968501 -192695852 + Tigger5 DNA MER2_type 4 55 -2268 * 370 164 27 14 chr1 49968470 49968543 -192695810 + Tigger5 DNA MER2_type 2250 2323 0 * 4217 173 36 98 chr1 49968543 49968707 -192695646 - L1MC2 LINE L1 -2430 4308 4409 1655 175 7 7 chr1 49968723 49968992 -192695361 - AluJo SINE Alu -43 269 1 3280 219 36 46 chr1 49968994 49970009 -192694344 - L1MC2 LINE L1 -2119 4421 3417 39 0 0 0 chr1 49970026 49970065 -192694288 + AT_rich Low_complexity Low_complexity 1 39 0 2042 117 25 0 chr1 49970065 49970348 -192694005 - AluSx SINE Alu -22 290 1 918 185 13 0 chr1 49970350 49970501 -192693852 - AluJb SINE Alu -24 288 136 2255 114 3 0 chr1 49970502 49970808 -192693545 - AluSx SINE Alu -5 307 1 1008 185 0 15 chr1 49970810 49971010 -192693343 - L1M4 LINE L1 -944 5202 5006 357 157 114 0 chr1 49971016 49971086 -192693267 - L1MC2 LINE L1 -3999 2722 2645 2087 139 3 0 chr1 49971139 49971442 -192692911 + AluSx SINE Alu 9 312 0 838 156 0 8 chr1 49971458 49971586 -192692767 + FLAM_C SINE Alu 1 127 -16 1134 211 81 13 chr1 49971589 49972311 -192692042 - L1MD3 LINE L1 -1 7994 7201 1591 122 101 7 chr1 49972314 49972592 -192691761 - L1MB4 LINE L1 -239 5941 5638 1635 158 45 0 chr1 49972625 49972890 -192691463 - AluJo SINE Alu -24 288 12 2192 96 4 0 chr1 49972923 49973204 -192691149 - AluSx SINE Alu -30 282 1 758 274 12 8 chr1 49973209 49973450 -192690903 - L1M4 LINE L1 -2696 3450 3209 309 153 15 0 chr1 49973576 49973637 -192690716 - Alu SINE Alu -256 45 4 787 216 121 41 chr1 49973637 49973695 -192690658 - L1M4 LINE L1 -3019 3127 3075 2283 92 0 7 chr1 49973695 49973998 -192690355 + AluY SINE Alu 1 301 -10 787 216 121 41 chr1 49973998 49974254 -192690099 - L1M4 LINE L1 -3071 3075 2788 1814 167 0 14 chr1 49974274 49974568 -192689785 - AluJo SINE Alu -22 290 1 579 258 43 47 chr1 49974572 49974621 -192689732 - L1MC2 LINE L1 -4620 1920 1872 2218 115 3 3 chr1 49974621 49974925 -192689428 - AluSx SINE Alu -8 304 1 579 258 43 47 chr1 49974925 49975174 -192689179 - L1MC2 LINE L1 -4668 1872 1623 439 223 83 31 chr1 49975260 49975453 -192688900 - L1MC/D LINE L1 -2322 5486 5284 21 0 0 0 chr1 49975524 49975545 -192688808 + AT_rich Low_complexity Low_complexity 1 21 0 296 248 19 57 chr1 49975792 49975897 -192688456 - MIR SINE MIR -65 197 97 2358 46 35 0 chr1 49976006 49976290 -192688063 - AluY SINE Alu -17 294 1 2061 134 0 20 chr1 49976920 49977226 -192687127 - AluJb SINE Alu -12 300 1 2222 124 0 0 chr1 49978486 49978793 -192685560 - AluSx SINE Alu -5 307 1 1917 161 0 23 chr1 49978929 49979239 -192685114 - AluJb SINE Alu -9 303 1 2406 89 0 0 chr1 49979247 49979549 -192684804 - AluSx SINE Alu -10 302 1 180 231 77 55 chr1 49979612 49979703 -192684650 + L2 LINE L2 3143 3235 -78 369 360 40 0 chr1 49980043 49980168 -192684185 - L2 LINE L2 -2 3270 3141 1803 147 39 7 chr1 49980743 49981028 -192683325 - AluJb SINE Alu -12 300 7 1053 156 0 108 chr1 49981464 49981533 -192682820 - AluJo SINE Alu -123 189 114 2030 138 3 0 chr1 49981533 49981822 -192682531 - AluSx SINE Alu -21 291 2 207 0 0 0 chr1 49981824 49981847 -192682506 + (TTTAA)n Simple_repeat Simple_repeat 4 26 0 2360 72 3 3 chr1 49981852 49982143 -192682210 - AluSp SINE Alu -22 291 1 1053 156 0 108 chr1 49982143 49982276 -192682077 - AluJo SINE Alu -203 109 1 270 285 83 49 chr1 49982316 49982460 -192681893 - MIR SINE MIR -75 187 39 279 328 35 43 chr1 49983009 49983125 -192681228 - L2 LINE L2 -2 3311 3197 2252 105 0 3 chr1 49983680 49983976 -192680377 - AluSx SINE Alu -17 295 1 1103 259 78 56 chr1 49983978 49984545 -192679808 - L1ME4a LINE L1 -184 5937 5359 269 212 45 30 chr1 49985629 49985695 -192678658 - L2 LINE L2 -607 2707 2641 1905 157 0 20 chr1 49986050 49986356 -192677997 + AluJo SINE Alu 11 310 -2 1745 171 3 26 chr1 49986444 49986580 -192677773 + AluJb SINE Alu 1 139 -173 2576 52 0 3 chr1 49986580 49986885 -192677468 + AluY SINE Alu 1 304 -7 762 48 0 0 chr1 49986885 49986988 -192677365 + (TA)n Simple_repeat Simple_repeat 1 103 0 1745 171 3 26 chr1 49986988 49987160 -192677193 + AluJb SINE Alu 137 303 -9 7009 244 64 76 chr1 49987841 49988773 -192675580 - L2 LINE L2 0 3313 2372 261 0 0 0 chr1 49988773 49988802 -192675551 + (TG)n Simple_repeat Simple_repeat 2 30 0 7009 244 64 76 chr1 49988802 49988882 -192675471 - L2 LINE L2 -941 2372 2293 2185 104 30 0 chr1 49988882 49989181 -192675172 + AluSq SINE Alu 1 308 -5 7009 244 64 76 chr1 49989181 49990221 -192674132 - L2 LINE L2 -1020 2293 1243 1306 180 172 12 chr1 49990221 49990477 -192673876 - AluSc SINE Alu -1 298 2 7009 244 64 76 chr1 49990477 49990983 -192673370 - L2 LINE L2 -2070 1243 698 1824 146 0 39 chr1 49990983 49991292 -192673061 + AluJb SINE Alu 7 303 -9 7009 244 64 76 chr1 49991292 49991625 -192672728 - L2 LINE L2 -2615 698 363 1928 120 19 0 chr1 49991675 49991941 -192672412 + AluSx SINE Alu 1 271 -41 2149 112 0 10 chr1 49992211 49992514 -192671839 + AluSx SINE Alu 2 301 -11 427 243 207 0 chr1 49993658 49993769 -192670584 - L2 LINE L2 -12 3260 3127 457 274 7 22 chr1 49993904 49994039 -192670314 + MIR SINE MIR 103 235 -27 187 320 0 0 chr1 49994009 49994059 -192670294 + L2 LINE L2 3210 3259 -13 * 1957 111 0 80 chr1 49994140 49994464 -192669889 - AluSq SINE Alu -15 298 1 1751 152 52 10 chr1 49994626 49994915 -192669438 + AluJb SINE Alu 1 301 -11 2308 104 0 3 chr1 49994982 49995290 -192669063 + AluSp SINE Alu 5 311 -2 2190 132 0 3 chr1 49995618 49995922 -192668431 + AluSx SINE Alu 1 303 -9 1480 209 27 0 chr1 49996139 49996435 -192667918 + AluJo SINE Alu 1 304 -8 2157 113 3 3 chr1 49996438 49996739 -192667614 + AluSx SINE Alu 1 301 -11 35 41 0 0 chr1 49996782 49996831 -192667522 + AT_rich Low_complexity Low_complexity 1 49 0 1868 252 41 150 chr1 49996927 49996967 -192667386 - L2 LINE L2 -825 2489 2446 2079 113 0 30 chr1 49996967 49997131 -192667222 - AluSx SINE Alu -20 292 140 2404 77 3 0 chr1 49997131 49997428 -192666925 - AluY SINE Alu -13 298 1 2079 113 0 30 chr1 49997428 49997564 -192666789 - AluSx SINE Alu -172 140 1 1868 252 41 150 chr1 49997564 49997990 -192666363 - L2 LINE L2 -868 2446 1975 838 172 8 0 chr1 49997990 49998124 -192666229 + FLAM_C SINE Alu 5 139 -4 1868 252 41 150 chr1 49998124 49998454 -192665899 - L2 LINE L2 -1339 1975 1723 2164 94 0 58 chr1 49998454 49998762 -192665591 + AluSx SINE Alu 6 295 -17 1868 252 41 150 chr1 49998762 49999066 -192665287 - L2 LINE L2 -1591 1723 1388 1235 124 68 0 chr1 49999245 49999422 -192664931 + MER5A DNA MER1_type 1 189 0 4270 135 25 45 chr1 50001080 50001837 -192662516 + L1MB8 LINE L1 5433 6174 -4 23 33 0 0 chr1 50002528 50002558 -192661795 + AT_rich Low_complexity Low_complexity 1 30 0 1702 148 7 25 chr1 50002812 50003095 -192661258 - AluJb SINE Alu -14 298 21 29 0 0 0 chr1 50003174 50003203 -192661150 + AT_rich Low_complexity Low_complexity 1 29 0 198 350 91 35 chr1 50003241 50003384 -192660969 + L2 LINE L2 3115 3265 -7 423 168 0 168 chr1 50003459 50003509 -192660844 - L1MA7 LINE L1 -23 6268 6211 2236 116 0 0 chr1 50003509 50003803 -192660550 - AluSx SINE Alu -14 298 5 423 168 0 168 chr1 50003803 50003919 -192660434 - L1MA7 LINE L1 -80 6211 6130 1126 107 0 0 chr1 50004022 50004171 -192660182 + AluSg/x SINE Alu 157 305 -7 1360 142 9 0 chr1 50004171 50004397 -192659956 - L1 LINE L1 -1565 4581 4354 1240 133 0 0 chr1 50004397 50004577 -192659776 - AluSg/x SINE Alu -4 308 129 1690 158 18 0 chr1 50004577 50004855 -192659498 - L1 LINE L1 -1786 4360 4078 983 251 199 13 chr1 50004841 50005239 -192659114 - HAL1 LINE L1 -801 1706 1235 * 189 107 0 0 chr1 50005325 50005353 -192659000 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 823 163 0 0 chr1 50005355 50005484 -192658869 - AluJb SINE Alu -2 310 182 2541 75 0 0 chr1 50005493 50005801 -192658552 - AluY SINE Alu -3 308 1 1833 249 36 153 chr1 50005829 50006228 -192658125 - L2 LINE L2 -896 2418 1974 838 172 8 0 chr1 50006228 50006362 -192657991 + FLAM_C SINE Alu 5 139 -4 1833 249 36 153 chr1 50006362 50006692 -192657661 - L2 LINE L2 -1340 1974 1726 2164 94 0 58 chr1 50006692 50007000 -192657353 + AluSx SINE Alu 6 295 -17 1833 249 36 153 chr1 50007000 50007304 -192657049 - L2 LINE L2 -1588 1726 1388 1235 124 68 0 chr1 50007483 50007660 -192656693 + MER5A DNA MER1_type 1 189 0 669 127 19 89 chr1 50009423 50009519 -192654834 - L1MA7 LINE L1 -97 6194 6112 1976 156 3 0 chr1 50009519 50009814 -192654539 + AluSx SINE Alu 1 296 -16 669 127 19 89 chr1 50009814 50009874 -192654479 - L1MA7 LINE L1 -179 6112 6049 240 385 11 0 chr1 50009874 50009965 -192654388 - L3 LINE CR1 -964 613 522 1849 152 10 20 chr1 50010212 50010514 -192653839 - AluJo SINE Alu -13 299 1 3870 128 32 4 chr1 50010532 50011095 -192653258 - L1PA16 LINE L1 -9 6157 5579 271 316 82 35 chr1 50011096 50011267 -192653086 + L2 LINE L2 2703 2881 -433 2315 70 35 0 chr1 50011426 50011711 -192652642 + AluY SINE Alu 6 300 -11 215 245 19 0 chr1 50012095 50012148 -192652205 + L2 LINE L2 3219 3272 0 557 211 70 0 chr1 50012314 50012428 -192651925 + L2 LINE L2 3188 3309 -4 315 282 173 0 chr1 50012435 50012591 -192651762 - MIR SINE MIR -77 185 3 230 379 0 29 chr1 50012777 50012880 -192651473 - MER5A DNA MER1_type 0 189 90 3120 39 0 3 chr1 50013575 50013933 -192650420 - L1PA4 LINE L1 -3 6152 5796 553 289 233 32 chr1 50013983 50014236 -192650117 - L2 LINE L2 -1 3271 2968 749 338 102 34 chr1 50014387 50014867 -192649486 - L2 LINE L2 -497 2817 2220 2036 156 0 6 chr1 50014867 50015181 -192649172 + AluJo SINE Alu 1 312 0 749 338 102 34 chr1 50015181 50015393 -192648960 - L2 LINE L2 -1094 2220 2024 2343 105 0 10 chr1 50015803 50016117 -192648236 - AluSx SINE Alu -1 311 1 613 93 0 0 chr1 50016145 50016220 -192648133 + AluSp/q SINE Alu 221 295 -18 552 306 78 0 chr1 50016247 50016466 -192647887 - L1M4 LINE L1 -1045 5101 4866 1901 135 12 35 chr1 50016504 50016823 -192647530 - AluJo SINE Alu 0 312 1 432 220 69 96 chr1 50016828 50016856 -192647497 - HAL1 LINE L1 -1165 1342 1315 2465 73 0 0 chr1 50016856 50017156 -192647197 + AluY SINE Alu 1 300 -11 432 220 69 96 chr1 50017156 50017345 -192647008 - HAL1 LINE L1 -1192 1315 1131 650 203 86 17 chr1 50018172 50018404 -192645949 - HAL1 LINE L1 -1381 1126 879 245 305 63 21 chr1 50018545 50018640 -192645713 - L2 LINE L2 -5 3308 3210 22599 142 24 12 chr1 50018692 50019166 -192645187 - L1MA2 LINE L1 0 7723 7256 2091 146 0 10 chr1 50019166 50019475 -192644878 - AluJb SINE Alu -6 306 1 22599 142 24 12 chr1 50019475 50020966 -192643387 - L1MA2 LINE L1 -467 7256 5784 2248 111 7 3 chr1 50020966 50021272 -192643081 - AluSq SINE Alu -6 307 1 22599 142 24 12 chr1 50021272 50024950 -192639403 - L1MA2 LINE L1 -1939 5784 2151 9242 39 2 1 chr1 50024950 50026020 -192638333 - MER11C LTR ERVK 0 1071 1 22599 142 24 12 chr1 50026020 50026616 -192637737 - L1MA2 LINE L1 -5572 2151 1563 3257 86 4 9 chr1 50026616 50027068 -192637285 + LTR7 LTR ERV1 1 450 0 22599 142 24 12 chr1 50027068 50028444 -192635909 - L1MA2 LINE L1 -6160 1563 13 252 0 0 0 chr1 50028952 50028980 -192635373 + (TCTCCC)n Simple_repeat Simple_repeat 2 29 0 5630 38 2 16 chr1 50028980 50030057 -192634296 + SVA Other Other 1 1386 0 1640 189 36 7 chr1 50030961 50031263 -192633090 - AluJo SINE Alu -1 311 1 2169 98 161 29 chr1 50031410 50031616 -192632737 - MSTA LTR MaLR 0 428 251 1708 199 3 0 chr1 50031616 50031923 -192632430 - AluJb SINE Alu -4 308 1 2169 98 161 29 chr1 50031923 50032094 -192632259 - MSTA LTR MaLR -177 251 1 8618 156 64 20 chr1 50032094 50033675 -192630678 - MSTA-int LTR MaLR 0 1651 1 2018 147 124 18 chr1 50033675 50034062 -192630291 - MSTA LTR MaLR 0 428 1 2051 72 4 0 chr1 50034244 50034508 -192629845 + L1PA6 LINE L1 5890 6154 0 2345 116 0 0 chr1 50034595 50034897 -192629456 - AluSx SINE Alu -10 302 1 291 271 165 23 chr1 50034967 50035100 -192629253 + L2 LINE L2 3162 3313 0 1283 171 3 77 chr1 50036697 50036995 -192627358 - AluJb SINE Alu -36 276 1 556 254 138 0 chr1 50037130 50037319 -192627034 - MIR SINE MIR -11 251 37 890 183 6 18 chr1 50037409 50037578 -192626775 + AluJo SINE Alu 7 173 -139 1463 147 6 121 chr1 50038182 50038336 -192626017 + AluJo SINE Alu 2 97 -205 260 51 0 26 chr1 50038336 50038375 -192625978 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 1463 147 6 121 chr1 50038375 50038560 -192625793 + AluJo SINE Alu 97 302 0 1756 153 4 21 chr1 50039098 50039379 -192624974 + AluJo SINE Alu 11 286 -26 275 65 22 0 chr1 50039382 50039428 -192624925 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 190 196 18 36 chr1 50039590 50039646 -192624707 + L2 LINE L2 3192 3246 -67 300 296 11 0 chr1 50039693 50039781 -192624572 + MIR3 SINE MIR 115 203 -5 303 222 14 0 chr1 50039888 50039960 -192624393 - MIR SINE MIR -14 248 176 1989 116 0 31 chr1 50039993 50040317 -192624036 - AluSg SINE Alu 0 315 1 1904 176 56 21 chr1 50040318 50040654 -192623699 + MLT2C1 LTR ERVL 4 356 -41 225 0 0 0 chr1 50040654 50040679 -192623674 + (TCTA)n Simple_repeat Simple_repeat 3 27 0 1904 176 56 21 chr1 50040679 50040717 -192623636 + MLT2C1 LTR ERVL 356 391 -6 686 248 0 13 chr1 50040717 50040874 -192623479 - MIR SINE MIR -106 156 2 1375 161 0 68 chr1 50041561 50041728 -192622625 - AluJb SINE Alu -15 297 120 465 34 0 0 chr1 50041728 50041787 -192622566 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2151 117 0 0 chr1 50041787 50042068 -192622285 - AluSc SINE Alu -28 281 1 1375 161 0 68 chr1 50042068 50042148 -192622205 - AluJb SINE Alu -190 122 66 588 132 11 0 chr1 50042176 50042267 -192622086 + AluJ/FLAM SINE Alu 2 93 -219 1568 154 57 50 chr1 50042294 50042593 -192621760 + AluJb SINE Alu 1 301 -11 744 186 183 64 chr1 50042596 50042845 -192621508 - L1MC5 LINE L1 -72 7889 7582 1925 163 7 0 chr1 50042845 50043139 -192621214 - AluJb SINE Alu -16 296 1 744 186 183 64 chr1 50043139 50043249 -192621104 - L1MC5 LINE L1 -379 7582 7487 268 318 59 29 chr1 50043291 50043461 -192620892 - L1MC4a LINE L1 -393 7415 7241 249 249 0 0 chr1 50043455 50043533 -192620820 - L1MC4 LINE L1 -728 7233 7180 * 271 264 25 37 chr1 50043731 50043894 -192620459 + (CACCC)n Simple_repeat Simple_repeat 5 165 0 4420 143 56 23 chr1 50044047 50045560 -192618793 + SVA Other Other 107 868 -535 243 88 0 0 chr1 50045902 50045936 -192618417 + (CA)n Simple_repeat Simple_repeat 2 35 0 359 71 0 18 chr1 50046056 50046112 -192618241 + (TG)n Simple_repeat Simple_repeat 2 56 0 351 0 0 0 chr1 50046165 50046204 -192618149 + (CA)n Simple_repeat Simple_repeat 2 40 0 180 224 121 0 chr1 50046942 50047000 -192617353 + L2 LINE L2 2969 3033 -239 245 204 41 0 chr1 50047145 50047194 -192617159 - MIR SINE MIR -64 144 94 1243 121 0 0 chr1 50047328 50047494 -192616859 - AluSg/x SINE Alu -12 298 133 204 213 0 0 chr1 50047711 50047758 -192616595 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 269 353 105 19 chr1 50047881 50048139 -192616214 + L2 LINE L2 2450 2729 -585 22116 52 6 0 chr1 50048148 50051679 -192612674 + L1PA6 LINE L1 2612 6154 0 427 340 104 64 chr1 50051817 50052267 -192612086 + L2 LINE L2 2805 3272 0 198 0 0 0 chr1 50052479 50052501 -192611852 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1604 166 7 42 chr1 50052510 50052799 -192611554 - AluJb SINE Alu -33 279 1 913 274 4 38 chr1 50052882 50053145 -192611208 - MIR SINE MIR -6 256 3 5938 109 52 21 chr1 50054645 50056852 -192607501 + SVA Other Other 107 1383 -3 2373 71 0 23 chr1 50056983 50057292 -192607061 + AluY SINE Alu 1 302 -9 1837 164 3 29 chr1 50057409 50057721 -192606632 - AluJo SINE Alu -2 310 7 202 250 16 0 chr1 50058277 50058341 -192606012 + MIR SINE MIR 194 258 -4 1997 107 10 13 chr1 50059092 50059390 -192604963 + AluSg SINE Alu 1 297 -13 1805 177 3 10 chr1 50059497 50059796 -192604557 - AluJb SINE Alu -15 297 1 295 316 23 82 chr1 50060660 50060831 -192603522 - L2 LINE L2 -117 3155 2995 2434 192 22 31 chr1 50061066 50061576 -192602777 - MLT1D LTR MaLR 0 505 1 633 218 7 7 chr1 50061629 50061776 -192602577 - L1MA10 LINE L1 0 6334 6188 445 194 154 27 chr1 50061781 50061959 -192602394 - L1ME2 LINE L1 -144 6020 5820 392 200 8 85 chr1 50061959 50062089 -192602264 + MIR SINE MIR 84 203 -59 370 326 55 70 chr1 50062838 50063001 -192601352 - L2 LINE L2 -400 2914 2757 848 169 0 0 chr1 50063001 50063131 -192601222 - FLAM_A SINE Alu -3 130 1 370 326 55 70 chr1 50063131 50063295 -192601058 - L2 LINE L2 -557 2757 2592 326 262 131 48 chr1 50063335 50063587 -192600766 + L2 LINE L2 2222 2494 -820 1022 209 35 8 chr1 50063944 50064203 -192600150 + L1M4 LINE L1 2316 2581 -3565 7637 80 43 125 chr1 50064272 50065769 -192598584 - SVA Other Other -1 1385 11 1754 178 14 0 chr1 50067021 50067307 -192597046 + AluJb SINE Alu 1 290 -22 558 153 24 48 chr1 50067618 50067742 -192596611 + AluSg/x SINE Alu 170 290 -19 1873 130 30 13 chr1 50068092 50068393 -192595960 + AluJb SINE Alu 5 310 -2 806 304 63 13 chr1 50068426 50068729 -192595624 - L2 LINE L2 -6 3307 2990 188 238 0 125 chr1 50068739 50068819 -192595534 - L2 LINE L2 -559 2755 2686 226 279 47 58 chr1 50069324 50069410 -192594943 + L2 LINE L2 3148 3232 -40 1815 132 30 0 chr1 50069689 50069954 -192594399 + AluSx SINE Alu 1 273 -39 1641 151 0 48 chr1 50070108 50070400 -192593953 - AluJo SINE Alu -34 278 1 2356 73 3 7 chr1 50070573 50070875 -192593478 - AluY SINE Alu -10 301 1 241 294 137 0 chr1 50071082 50071184 -192593169 + L2 LINE L2 2272 2387 -927 1825 168 47 0 chr1 50071215 50071513 -192592840 - AluJo SINE Alu 0 312 1 929 262 46 4 chr1 50071774 50072011 -192592342 + MIR SINE MIR 1 247 -15 6976 191 113 84 chr1 50072055 50075134 -192589219 + L1MD1 LINE L1 26 3015 -3525 2117 89 11 4 chr1 50075134 50075415 -192588938 + AluSq SINE Alu 18 300 -13 1811 161 3 55 chr1 50075419 50075748 -192588605 + AluJo SINE Alu 1 312 0 6976 191 113 84 chr1 50075748 50076256 -192588097 + L1MD1 LINE L1 3017 3509 -3031 775 173 0 8 chr1 50076256 50076389 -192587964 + FLAM_C SINE Alu 2 133 0 6976 191 113 84 chr1 50076389 50076491 -192587862 + L1MD1 LINE L1 3509 3607 -2933 827 206 0 0 chr1 50076491 50076637 -192587716 - FRAM SINE Alu -30 146 1 6976 191 113 84 chr1 50076637 50077077 -192587276 + L1MD1 LINE L1 3607 4033 -2507 1488 141 57 53 chr1 50077077 50077360 -192586993 - AluJo SINE Alu -15 297 14 6976 191 113 84 chr1 50077360 50077892 -192586461 + L1MD1 LINE L1 4033 4548 -1992 1481 129 12 33 chr1 50077892 50078133 -192586220 - AluJo SINE Alu -76 236 1 6976 191 113 84 chr1 50078133 50078259 -192586094 + L1MD1 LINE L1 4548 5254 -1286 1848 160 27 42 chr1 50078267 50078674 -192585679 - L1MC2 LINE L1 -192 6152 5752 664 217 17 78 chr1 50078668 50078789 -192585564 - L1MC2 LINE L1 -1586 4560 4433 * 2449 73 10 0 chr1 50078789 50079091 -192585262 - AluY SINE Alu -6 305 1 664 217 17 78 chr1 50079091 50079264 -192585089 - L1MC2 LINE L1 -1713 4433 4284 4236 166 61 45 chr1 50079269 50079536 -192584817 + L1MD1 LINE L1 5246 5507 -1129 2308 105 0 0 chr1 50079536 50079831 -192584522 - AluSx SINE Alu -16 296 2 4236 166 61 45 chr1 50079831 50080000 -192584353 + L1MD1 LINE L1 5507 5672 -964 261 0 0 0 chr1 50080000 50080029 -192584324 + (CA)n Simple_repeat Simple_repeat 2 30 0 4236 166 61 45 chr1 50080029 50080969 -192583384 + L1MD1 LINE L1 5672 6636 0 1990 161 0 3 chr1 50081076 50081381 -192582972 + AluSx SINE Alu 1 304 -8 316 322 25 8 chr1 50081397 50081515 -192582838 - MIR SINE MIR -75 187 68 59 38 0 0 chr1 50081672 50081752 -192582601 + AT_rich Low_complexity Low_complexity 1 80 0 233 163 0 0 chr1 50081794 50081843 -192582510 + L1MA9 LINE L1 6225 6273 -39 342 301 0 0 chr1 50081927 50082020 -192582333 + MIR3 SINE MIR 112 204 -4 7417 38 5 0 chr1 50082247 50083881 -192580472 - L1PA5 LINE L1 0 6154 4518 31 76 0 0 chr1 50083911 50083977 -192580376 + AT_rich Low_complexity Low_complexity 1 66 0 2098 173 26 7 chr1 50084431 50084859 -192579494 - L1MB2 LINE L1 -226 5942 5507 1067 148 46 0 chr1 50084861 50085057 -192579296 + L1MB2 LINE L1 5949 6153 -18 2058 140 0 0 chr1 50085502 50085794 -192578559 - AluJb SINE Alu -20 292 1 25 83 0 0 chr1 50085914 50085974 -192578379 + AT_rich Low_complexity Low_complexity 1 60 0 244 88 0 0 chr1 50086010 50086044 -192578309 - Alu SINE Alu -265 34 1 1453 167 120 0 chr1 50086716 50086974 -192577379 - AluJo SINE Alu -15 297 9 1364 280 67 21 chr1 50087010 50087647 -192576706 - L2 LINE L2 -99 3214 2549 430 169 11 22 chr1 50087737 50087826 -192576527 - MER8 DNA MER2_type -4 235 148 2301 108 0 3 chr1 50087855 50088169 -192576184 + AluSq SINE Alu 1 313 0 490 235 0 0 chr1 50088173 50088271 -192576082 - MER8 DNA MER2_type -79 160 63 693 189 12 61 chr1 50088271 50088435 -192575918 - MER21B LTR ERV1 -565 298 143 2161 110 36 0 chr1 50088513 50088814 -192575539 - AluSx SINE Alu 0 312 1 789 218 11 17 chr1 50088815 50088994 -192575359 - AluJ SINE Alu -15 297 120 478 182 18 0 chr1 50088998 50089108 -192575245 + CT-rich Low_complexity Low_complexity 1 112 0 630 184 45 78 chr1 50089108 50089287 -192575066 - AluJo SINE Alu -11 301 129 224 140 40 20 chr1 50089287 50089337 -192575016 + T-rich Low_complexity Low_complexity 2 52 0 889 134 0 15 chr1 50089337 50089471 -192574882 - AluJo SINE Alu -169 133 2 2064 222 51 8 chr1 50089477 50089810 -192574543 + L1MEc LINE L1 1704 2021 -4375 1243 189 18 9 chr1 50089810 50090032 -192574321 + MER58A DNA MER1_type 1 224 0 2064 222 51 8 chr1 50090032 50090350 -192574003 + L1MEc LINE L1 2021 2383 -4013 233 333 49 42 chr1 50090373 50090637 -192573716 + L1MD2 LINE L1 34 299 -6241 491 205 19 83 chr1 50091257 50091462 -192572891 + L1MD2 LINE L1 2620 2811 -3729 262 200 35 35 chr1 50091520 50091605 -192572748 - L1M4 LINE L1 -3728 2418 2334 1424 192 0 15 chr1 50091608 50091868 -192572485 + AluJb SINE Alu 49 304 -8 4926 225 83 36 chr1 50091889 50091980 -192572373 + L1MD2 LINE L1 3765 3850 -2903 1599 175 93 4 chr1 50091980 50092260 -192572093 - AluJb SINE Alu -7 305 1 4926 225 83 36 chr1 50092260 50092523 -192571830 + L1MD2 LINE L1 3850 4099 -2654 2046 144 10 13 chr1 50092523 50092835 -192571518 + AluJb SINE Alu 2 312 0 4926 225 83 36 chr1 50092835 50093879 -192570474 + L1MD2 LINE L1 4099 5092 -1661 1595 166 3 31 chr1 50093879 50094169 -192570184 + AluJo SINE Alu 1 282 -30 4926 225 83 36 chr1 50094169 50095403 -192568950 + L1MD2 LINE L1 5092 6526 -227 1539 248 118 0 chr1 50095482 50095913 -192568440 - L2 LINE L2 -1211 2103 1622 2152 89 7 0 chr1 50096066 50096336 -192568017 - AluSx SINE Alu -2 310 39 936 179 6 6 chr1 50096712 50096874 -192567479 - AluJb SINE Alu -16 296 135 198 103 0 0 chr1 50097218 50097247 -192567106 + (A)n Simple_repeat Simple_repeat 1 29 0 1344 196 60 47 chr1 50098620 50098921 -192565432 + AluJo SINE Alu 1 305 -7 1169 184 38 8 chr1 50099499 50099525 -192564828 + L1M3 LINE L1 5319 5343 -821 1884 164 10 13 chr1 50099525 50099836 -192564517 + AluJo SINE Alu 3 312 0 1169 184 38 8 chr1 50099836 50100110 -192564243 + L1M3 LINE L1 5343 5628 -536 211 381 0 0 chr1 50100331 50100394 -192563959 + L2 LINE L2 3116 3178 -94 509 245 129 7 chr1 50100608 50100747 -192563606 + L2 LINE L2 51 206 -3108 497 265 4 119 chr1 50100773 50101033 -192563320 + L2 LINE L2 3084 3313 0 23 0 0 0 chr1 50101181 50101204 -192563149 + AT_rich Low_complexity Low_complexity 1 23 0 405 181 18 175 chr1 50101396 50101567 -192562786 - L1MA10 LINE L1 -6 6324 6163 555 320 56 19 chr1 50101808 50102077 -192562276 - L2 LINE L2 -559 2755 2477 2893 154 15 31 chr1 50102077 50102873 -192561480 + L1PA16 LINE L1 4830 5607 -559 1904 144 55 7 chr1 50102873 50103164 -192561189 + AluSx SINE Alu 1 305 -7 2893 154 15 31 chr1 50103164 50103343 -192561010 + L1PA16 LINE L1 5607 5787 -379 5590 154 21 13 chr1 50103343 50104234 -192560119 + L1PB1 LINE L1 4104 4987 -1164 2054 141 3 3 chr1 50104234 50104532 -192559821 + AluSq SINE Alu 1 298 -15 5590 154 21 13 chr1 50104532 50105676 -192558677 + L1PB1 LINE L1 4987 6149 -2 2314 119 47 18 chr1 50105714 50106101 -192558252 + L1PA16 LINE L1 5769 6166 0 527 271 59 25 chr1 50106108 50106311 -192558042 - L2 LINE L2 -832 2482 2273 535 263 42 15 chr1 50106399 50106631 -192557722 + L1M4 LINE L1 4138 4379 -1767 * 2519 192 74 52 chr1 50106628 50106829 -192557524 - L1ME2 LINE L1 -105 6059 5864 1826 125 29 7 chr1 50106829 50107109 -192557244 - AluJb SINE Alu -26 286 1 2519 192 74 52 chr1 50107109 50107735 -192556618 - L1ME2 LINE L1 -300 5864 5215 2100 120 7 19 chr1 50107795 50108103 -192556250 - AluSx SINE Alu -8 304 1 620 268 107 5 chr1 50108145 50108350 -192556003 + MIR SINE MIR 31 256 -6 431 268 121 56 chr1 50108930 50109128 -192555225 + MIR SINE MIR 52 262 0 2266 99 0 0 chr1 50109231 50109523 -192554830 - AluSx SINE Alu -20 292 1 559 193 0 8 chr1 50109641 50109760 -192554593 + Charlie1 DNA MER1_type 2637 2754 -7 2916 128 57 8 chr1 50109795 50110301 -192554052 - L1MA4A LINE L1 -4 6299 5769 983 159 0 6 chr1 50110301 50110458 -192553895 - AluSp SINE Alu -24 289 134 2125 93 10 17 chr1 50110458 50110760 -192553593 - AluSx SINE Alu -12 300 1 2264 146 5 2 chr1 50110760 50111158 -192553195 - L1MA4A LINE L1 -516 5787 5389 183 286 119 65 chr1 50111564 50111749 -192552604 + L2 LINE L2 2531 2725 -589 974 93 7 22 chr1 50111844 50111983 -192552370 + AluSx SINE Alu 1 137 -175 39733 60 5 4 chr1 50111985 50118119 -192546234 + L1PA5 LINE L1 2 6143 -11 1521 84 0 0 chr1 50118139 50118329 -192546024 + AluSx SINE Alu 119 308 -2 646 241 77 65 chr1 50118355 50118616 -192545737 + MER102a DNA MER1_type 60 323 -7 306 197 15 0 chr1 50118932 50118998 -192545355 + MIR SINE MIR 185 251 -11 302 314 36 90 chr1 50118964 50119187 -192545166 - MIR SINE MIR -51 211 1 * 180 316 51 25 chr1 50119210 50119289 -192545064 + L2 LINE L2 2677 2757 -557 1916 145 0 14 chr1 50120063 50120346 -192544007 - AluJo SINE Alu -14 298 20 765 183 0 80 chr1 50120347 50120522 -192543831 - AluJo SINE Alu -151 161 1 23 0 0 0 chr1 50122074 50122097 -192542256 + AT_rich Low_complexity Low_complexity 1 23 0 1885 153 0 4 chr1 50122532 50122806 -192541547 + AluJo SINE Alu 15 287 -25 702 268 100 9 chr1 50123191 50123422 -192540931 + MIR SINE MIR 11 262 0 2079 141 3 0 chr1 50123629 50123927 -192540426 + AluSx SINE Alu 1 299 -13 1700 133 24 51 chr1 50124097 50124391 -192539962 + AluSx SINE Alu 11 296 -16 337 119 0 0 chr1 50124409 50124468 -192539885 - L1MC4 LINE L1 0 8042 7984 1898 231 138 13 chr1 50124474 50125095 -192539258 - L1MC4 LINE L1 -95 7713 7171 1900 153 0 7 chr1 50125095 50125389 -192538964 - AluJb SINE Alu -20 292 1 1898 231 138 13 chr1 50125389 50125771 -192538582 - L1MC4 LINE L1 -637 7171 6838 208 0 62 0 chr1 50125771 50125803 -192538550 + (TA)n Simple_repeat Simple_repeat 2 35 0 1898 231 138 13 chr1 50125803 50125891 -192538462 - L1MC4 LINE L1 -970 6838 6762 2166 122 3 3 chr1 50125891 50126202 -192538151 - AluSx SINE Alu -1 311 1 1898 231 138 13 chr1 50126202 50126283 -192538070 - L1MC4 LINE L1 -1046 6762 6444 235 240 16 96 chr1 50127255 50127380 -192536973 + LTR16C LTR ERVL 305 419 -72 643 143 10 0 chr1 50127573 50127671 -192536682 - AluS SINE Alu -214 99 1 332 221 105 0 chr1 50127672 50127758 -192536595 - MER2 DNA MER2_type -250 95 1 1711 170 7 0 chr1 50127781 50128081 -192536272 + AluSx SINE Alu 2 303 -9 25 0 0 0 chr1 50128551 50128576 -192535777 + AT_rich Low_complexity Low_complexity 1 25 0 620 184 6 42 chr1 50128576 50128744 -192535609 + L1MB8 LINE L1 4272 4433 -1713 * 2348 163 45 45 chr1 50128742 50129256 -192535097 + L1PA16 LINE L1 5653 6166 0 413 152 50 30 chr1 50129253 50129352 -192535001 + L1MB8 LINE L1 4457 4557 -1589 * 1052 168 118 14 chr1 50129352 50129572 -192534781 + MLT1D LTR MaLR 3 245 -260 42353 36 1 4 chr1 50129581 50131771 -192532582 + L1PA3 LINE L1 3 2198 -3957 2406 40 40 0 chr1 50131771 50132070 -192532283 + AluY SINE Alu 1 311 0 42353 36 1 4 chr1 50132070 50136050 -192528303 + L1PA3 LINE L1 2198 6155 0 843 165 78 112 chr1 50136111 50136229 -192528124 + MLT1D LTR MaLR 270 378 -127 1685 144 59 7 chr1 50136229 50136527 -192527826 - AluSx SINE Alu 0 312 1 843 165 78 112 chr1 50136527 50136649 -192527704 + MLT1D LTR MaLR 378 503 -2 4394 172 32 17 chr1 50136650 50138254 -192526099 + L1MB8 LINE L1 4550 6173 -5 2011 142 0 3 chr1 50138667 50138981 -192525372 + AluSx SINE Alu 1 313 0 1774 185 7 3 chr1 50139110 50139413 -192524940 + AluJb SINE Alu 1 304 -8 1806 163 0 36 chr1 50139668 50139969 -192524384 + AluJb SINE Alu 2 291 -21 236 322 11 11 chr1 50140245 50140335 -192524018 + LTR16A1 LTR ERVL 43 132 -325 819 298 59 54 chr1 50140342 50140572 -192523781 - LTR16A LTR ERVL -5 445 211 2169 57 47 3 chr1 50140572 50140870 -192523483 - AluY SINE Alu 0 311 1 819 298 59 54 chr1 50140870 50141082 -192523271 - LTR16A LTR ERVL -239 211 1 439 251 104 29 chr1 50141151 50141288 -192523065 + LTR16A LTR ERVL 235 387 -70 540 145 0 0 chr1 50141290 50141373 -192522980 - MIR SINE MIR -133 129 47 1182 136 75 64 chr1 50141475 50141755 -192522598 - L1MB7 LINE L1 -7 6177 5895 4465 147 51 21 chr1 50141758 50142141 -192522212 - L1MB3 LINE L1 -2 6181 5811 204 40 0 0 chr1 50142141 50142166 -192522187 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 4465 147 51 21 chr1 50142166 50142683 -192521670 - L1MB3 LINE L1 -372 5811 5254 190 290 16 16 chr1 50142705 50142767 -192521586 - L2 LINE L2 -978 2336 2275 277 371 57 18 chr1 50143084 50143364 -192520989 - L2 LINE L2 -1262 2052 1762 646 211 28 0 chr1 50143371 50143513 -192520840 - MIR SINE MIR 0 262 117 237 237 0 0 chr1 50143550 50143609 -192520744 + (TA)n Simple_repeat Simple_repeat 2 60 0 2501 58 0 0 chr1 50144233 50144526 -192519827 + AluY SINE Alu 1 293 -18 1850 152 17 10 chr1 50144870 50145167 -192519186 - AluJb SINE Alu -11 301 3 1889 150 6 26 chr1 50145498 50145811 -192518542 - AluJb SINE Alu -5 307 1 635 247 11 56 chr1 50145837 50146015 -192518338 - MER5B DNA MER1_type -6 172 3 2454 75 0 3 chr1 50146021 50146326 -192518027 - AluY SINE Alu -7 304 1 493 202 104 27 chr1 50146341 50146491 -192517862 - L1ME1 LINE L1 0 6334 6015 2366 148 34 5 chr1 50146500 50146938 -192517415 + MER101 LTR ERV1 24 474 0 2252 180 36 52 chr1 50146972 50147277 -192517076 - L1ME1 LINE L1 -193 5973 5680 8583 105 13 12 chr1 50147277 50148571 -192515782 + HSMAR2 DNA Mariner 5 1300 -2 2252 180 36 52 chr1 50148571 50148847 -192515506 - L1ME1 LINE L1 -486 5680 5401 2286 74 27 10 chr1 50148930 50149226 -192515127 - AluSc SINE Alu -8 301 1 223 135 0 0 chr1 50149756 50149793 -192514560 - L2 LINE L2 0 3272 3236 2273 156 30 46 chr1 50150504 50150979 -192513374 + MLT1C LTR MaLR 1 467 0 183 300 0 33 chr1 50151584 50151644 -192512709 - L2 LINE L2 -1 3271 3214 21 0 0 0 chr1 50151800 50151821 -192512532 + AT_rich Low_complexity Low_complexity 1 21 0 201 184 41 0 chr1 50153686 50153735 -192510618 + (CCCG)n Simple_repeat Simple_repeat 3 53 0 356 229 211 18 chr1 50154245 50154354 -192509999 + L2 LINE L2 3163 3292 -21 186 237 51 34 chr1 50154698 50154757 -192509596 + MIR SINE MIR 129 188 -74 1037 198 46 0 chr1 50154778 50154975 -192509378 - AluJo SINE Alu -22 290 85 1726 174 3 22 chr1 50155043 50155359 -192508994 + AluJo SINE Alu 1 310 -2 433 277 44 29 chr1 50155536 50155673 -192508680 + L2 LINE L2 3134 3272 0 1504 92 0 24 chr1 50155702 50155908 -192508445 - AluSc SINE Alu -5 304 104 538 148 50 0 chr1 50155908 50156009 -192508344 + AluSg/x SINE Alu 202 307 -5 471 300 113 13 chr1 50156417 50156567 -192507786 + MER91A DNA MER1_type 32 196 0 23 0 0 0 chr1 50156922 50156945 -192507408 + AT_rich Low_complexity Low_complexity 1 23 0 1711 173 71 0 chr1 50157071 50157354 -192506999 - AluJo SINE Alu -9 303 1 2379 115 0 0 chr1 50157399 50157704 -192506649 - AluSq SINE Alu -8 305 1 398 310 66 68 chr1 50157872 50158237 -192506116 + MLT1K LTR MaLR 168 531 -57 2268 67 53 0 chr1 50158287 50158572 -192505781 + AluSg SINE Alu 2 301 -9 527 258 41 13 chr1 50158667 50158981 -192505372 - L1ME3 LINE L1 -60 6102 5736 1077 269 82 32 chr1 50158987 50159399 -192504954 - LTR16B LTR ERVL -31 433 1 522 306 54 60 chr1 50159399 50159937 -192504416 - ERVL LTR ERVL 0 5375 4537 472 314 54 25 chr1 50159938 50160218 -192504135 - MERVL LTR ERVL -629 4856 4569 673 308 53 40 chr1 50160221 50160309 -192504044 - MERVL LTR ERVL -1052 3944 3859 1554 216 96 14 chr1 50160309 50160675 -192503678 - MSTD LTR MaLR 0 396 1 673 308 53 40 chr1 50160675 50161221 -192503132 - MERVL LTR ERVL -1137 3859 3681 * 1710 324 50 43 chr1 50161217 50162485 -192501868 - MERVL LTR ERVL -1827 3937 2661 1410 201 34 83 chr1 50162495 50162903 -192501450 + MLT2B1 LTR ERVL 1 388 -132 710 289 21 58 chr1 50162970 50163293 -192501060 - MERVL LTR ERVL -2395 2601 2297 251 272 68 68 chr1 50163667 50163902 -192500451 - HAL1 LINE L1 -2181 326 92 404 134 0 15 chr1 50163925 50163992 -192500361 - MER58 DNA MER1_type 0 2420 2355 551 271 185 0 chr1 50164046 50164197 -192500156 + MER5A DNA MER1_type 11 189 0 249 265 0 15 chr1 50164200 50164268 -192500085 - HAL1 LINE L1 -2440 67 1 357 310 26 9 chr1 50164351 50164464 -192499889 + MIR3 SINE MIR 90 204 -4 285 196 0 0 chr1 50164601 50164657 -192499696 + MER69 DNA AcHobo 8 63 -2463 2270 116 0 22 chr1 50164661 50164980 -192499373 - AluSx SINE Alu 0 312 1 2040 147 3 0 chr1 50165012 50165311 -192499042 - AluSx SINE Alu -12 300 1 437 231 29 0 chr1 50165332 50165436 -192498917 + MER69 DNA AcHobo 2418 2524 -2 2114 93 3 23 chr1 50165490 50165792 -192498561 + AluSg SINE Alu 1 296 -14 2469 245 86 48 chr1 50166238 50167207 -192497146 + HAL1 LINE L1 283 1294 -1213 1743 195 0 16 chr1 50167207 50167520 -192496833 + AluJo SINE Alu 1 308 -4 2469 245 86 48 chr1 50167520 50167571 -192496782 + HAL1 LINE L1 1294 1342 -1165 208 411 14 19 chr1 50167624 50167838 -192496515 - L2 LINE L2 -505 2809 2597 234 321 149 38 chr1 50167903 50168352 -192496001 - L2 LINE L2 -826 2488 1990 704 214 10 65 chr1 50168740 50168941 -192495412 - LTR41 LTR ERVL -583 190 1 2017 96 67 19 chr1 50169126 50169238 -192495115 + HSMAR1 DNA Mariner 7 112 -1175 207 0 0 0 chr1 50169238 50169261 -192495092 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2017 96 67 19 chr1 50169261 50169462 -192494891 + HSMAR1 DNA Mariner 112 335 -952 216 170 0 0 chr1 50169547 50169600 -192494753 + T-rich Low_complexity Low_complexity 1 53 0 3435 14 0 0 chr1 50169812 50170215 -192494138 + SVA Other Other 1012 1414 0 6270 89 13 20 chr1 50170215 50170550 -192493803 + HSMAR1 DNA Mariner 448 784 -503 2113 105 40 7 chr1 50170550 50170846 -192493507 - AluSx SINE Alu -6 306 1 6270 89 13 20 chr1 50170846 50171356 -192492997 + HSMAR1 DNA Mariner 784 1287 0 405 254 109 12 chr1 50171444 50171609 -192492744 - ERVL LTR ERVL -279 5485 5305 2135 138 6 0 chr1 50171731 50172042 -192492311 + AluSq SINE Alu 1 313 0 379 194 32 8 chr1 50172043 50172167 -192492186 + GA-rich Low_complexity Low_complexity 2 128 0 215 74 0 0 chr1 50172167 50172194 -192492159 + (GGGAA)n Simple_repeat Simple_repeat 4 30 0 603 317 55 6 chr1 50172194 50172625 -192491728 - ERVL LTR ERVL -615 5149 4638 1529 304 86 57 chr1 50172636 50172695 -192491658 - ERVL LTR ERVL -3300 2464 2408 2243 119 3 3 chr1 50172695 50173007 -192491346 - AluSx SINE Alu 0 312 1 1529 304 86 57 chr1 50173007 50173702 -192490651 - ERVL LTR ERVL -3356 2408 1735 2059 160 5 47 chr1 50173702 50174083 -192490270 + MLT1A1 LTR MaLR 1 365 0 1529 304 86 57 chr1 50174083 50174739 -192489614 - ERVL LTR ERVL -4029 1735 935 2276 119 137 8 chr1 50174739 50175118 -192489235 + MSTA LTR MaLR 1 428 0 1529 304 86 57 chr1 50175118 50175299 -192489054 - ERVL LTR ERVL -4829 935 761 784 273 92 72 chr1 50175401 50175760 -192488593 - MLT1J LTR MaLR -145 366 1 380 349 56 11 chr1 50176050 50176408 -192487945 + L1ME LINE L1 3543 3916 -2230 302 306 0 18 chr1 50176728 50176839 -192487514 + L1ME LINE L1 5559 5667 -454 2266 92 7 23 chr1 50177351 50177655 -192486698 + AluSp SINE Alu 1 299 -14 2152 116 3 0 chr1 50177779 50178072 -192486281 + AluSx SINE Alu 1 294 -18 581 51 26 0 chr1 50178541 50178619 -192485734 - MADE1 DNA Mariner 0 80 1 2230 98 24 3 chr1 50179018 50179313 -192485040 - AluSg SINE Alu -9 301 1 1751 197 19 71 chr1 50180048 50180090 -192484263 + L1ME2 LINE L1 4345 4388 -1758 2264 122 0 0 chr1 50180090 50180386 -192483967 + AluSx SINE Alu 1 296 -16 1751 197 19 71 chr1 50180386 50180790 -192483563 + L1ME2 LINE L1 4388 4761 -1385 2075 146 0 13 chr1 50180790 50181106 -192483247 + AluJb SINE Alu 1 312 0 1751 197 19 71 chr1 50181106 50181190 -192483163 + L1ME2 LINE L1 4761 4848 -1298 2399 151 53 17 chr1 50181203 50181614 -192482739 + MSTB LTR MaLR 1 426 0 8533 175 45 7 chr1 50181618 50181804 -192482549 + MSTB-int LTR MaLR 5 183 -1468 2308 97 0 7 chr1 50181804 50182103 -192482250 + AluSg SINE Alu 1 297 -13 180 0 0 0 chr1 50182103 50182123 -192482230 + (GA)n Simple_repeat Simple_repeat 2 21 0 8533 175 45 7 chr1 50182123 50183522 -192480831 + MSTB-int LTR MaLR 182 1651 0 2041 144 45 41 chr1 50183522 50183991 -192480362 + MSTB LTR MaLR 1 424 -2 3097 192 96 54 chr1 50183997 50184294 -192480059 + L1ME2 LINE L1 4872 5155 -1009 1939 176 0 3 chr1 50184294 50184601 -192479752 + AluJo SINE Alu 1 306 -6 3097 192 96 54 chr1 50184601 50184890 -192479463 + L1ME2 LINE L1 5155 5430 -734 2257 86 21 3 chr1 50184890 50185181 -192479172 + AluSp SINE Alu 1 296 -17 3097 192 96 54 chr1 50185181 50185838 -192478515 + L1ME2 LINE L1 5430 6154 -10 964 120 8 0 chr1 50185850 50185983 -192478370 + AluJ SINE Alu 1 134 -178 22 70 0 0 chr1 50186238 50186281 -192478072 + AT_rich Low_complexity Low_complexity 1 43 0 2124 137 73 12 chr1 50186435 50186778 -192477575 - THE1B LTR MaLR 0 364 1 11350 95 28 7 chr1 50186778 50187068 -192477285 - THE1B-int LTR MaLR 0 1580 1298 2182 131 0 3 chr1 50187068 50187373 -192476980 - AluSx SINE Alu -8 304 1 11350 95 28 7 chr1 50187373 50188625 -192475728 - THE1B-int LTR MaLR -282 1298 6 2517 112 31 11 chr1 50188630 50188987 -192475366 - THE1B LTR MaLR 0 364 1 4001 129 26 16 chr1 50189137 50189291 -192475062 + L1MA4A LINE L1 4644 4795 -1508 1597 193 0 0 chr1 50189291 50189555 -192474798 + AluJb SINE Alu 16 279 -33 306 0 0 0 chr1 50189557 50189591 -192474762 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4001 129 26 16 chr1 50189591 50190391 -192473962 + L1MA4A LINE L1 4795 5610 -693 847 201 7 0 chr1 50190391 50190535 -192473818 + AluJ SINE Alu 138 282 -30 210 37 0 0 chr1 50190541 50190568 -192473785 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4492 116 14 11 chr1 50190568 50191278 -192473075 + L1MA4A LINE L1 5592 6303 0 2002 220 11 15 chr1 50191290 50191759 -192472594 + L1MD3 LINE L1 7062 7737 -253 712 192 0 16 chr1 50191806 50191931 -192472422 + FLAM_C SINE Alu 2 124 -19 414 306 190 18 chr1 50192136 50192525 -192471828 - L2 LINE L2 -1036 2278 1823 392 273 0 58 chr1 50192573 50192694 -192471659 + ERVL LTR ERVL 1346 1459 -4305 2266 115 19 36 chr1 50192694 50193058 -192471295 + THE1B LTR MaLR 1 358 -6 441 270 36 77 chr1 50193058 50193291 -192471062 + ERVL LTR ERVL 2617 2841 -2813 1708 173 2 112 chr1 50193291 50193701 -192470652 + MLT1A1 LTR MaLR 1 365 0 441 270 36 77 chr1 50193701 50193715 -192470638 + ERVL LTR ERVL 2841 2854 -2800 7520 69 12 71 chr1 50193754 50194867 -192469486 + SVA Other Other 1 1047 -339 630 254 49 22 chr1 50194873 50195058 -192469295 + ERVL LTR ERVL 2831 3034 -2634 286 150 25 113 chr1 50195030 50195110 -192469243 - ERVL LTR ERVL -1594 4170 4098 * 2088 138 0 0 chr1 50195154 50195451 -192468902 - AluSx SINE Alu -15 297 1 1086 159 12 0 chr1 50195472 50195642 -192468711 - FAM SINE Alu -1 174 3 1067 297 100 41 chr1 50195645 50196412 -192467941 + ERVL LTR ERVL 3049 3941 -1823 1420 124 62 0 chr1 50196427 50196524 -192467829 - AluJo SINE Alu -81 231 141 267 31 0 0 chr1 50196524 50196556 -192467797 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1420 124 62 0 chr1 50196556 50196667 -192467686 - AluJo SINE Alu -171 141 10 800 140 184 0 chr1 50196682 50196818 -192467535 + AluJo SINE Alu 121 281 -31 249 211 0 0 chr1 50196820 50196877 -192467476 + GA-rich Low_complexity Low_complexity 1 57 0 495 209 29 0 chr1 50196961 50197100 -192467253 + GA-rich Low_complexity Low_complexity 4 146 0 493 208 40 0 chr1 50197133 50197234 -192467119 + MLT1C-int LTR MaLR 1267 1371 0 1939 172 34 13 chr1 50197275 50197658 -192466695 + MLT1C LTR MaLR 59 449 -18 444 275 92 13 chr1 50197679 50198126 -192466227 - L1M4 LINE L1 -868 5278 4743 1289 145 33 9 chr1 50198126 50198340 -192466013 + MER20 DNA MER1_type 1 219 0 542 281 0 20 chr1 50198371 50198517 -192465836 - MIR SINE MIR -60 202 60 326 339 51 8 chr1 50198617 50198735 -192465618 - L2 LINE L2 -16 3256 3134 2517 68 0 0 chr1 50199687 50199981 -192464372 - AluSg SINE Alu -16 294 1 254 279 144 0 chr1 50200217 50200328 -192464025 - L2 LINE L2 -2 3311 3185 262 181 7 219 chr1 50200413 50200508 -192463845 - L2 LINE L2 -14 3258 3207 2041 116 49 0 chr1 50200508 50200793 -192463560 + AluSx SINE Alu 1 299 -13 262 181 7 219 chr1 50200793 50200852 -192463501 - L2 LINE L2 -65 3207 3137 216 289 62 58 chr1 50200880 50201088 -192463265 - L2 LINE L2 -240 3032 2824 426 305 18 74 chr1 50201190 50201388 -192462965 - L2 LINE L2 -863 2451 2243 965 232 87 128 chr1 50201388 50201839 -192462514 - LTR8A LTR ERV1 0 727 259 2178 125 3 0 chr1 50201839 50202136 -192462217 + AluSq SINE Alu 1 298 -15 965 232 87 128 chr1 50202136 50202399 -192461954 - LTR8A LTR ERV1 -468 259 43 2093 145 0 16 chr1 50202399 50202710 -192461643 + AluSx SINE Alu 1 306 -6 965 232 87 128 chr1 50202710 50202752 -192461601 - LTR8A LTR ERV1 -684 43 1 426 305 18 74 chr1 50202752 50202838 -192461515 - L2 LINE L2 -1071 2243 2183 1717 175 11 4 chr1 50202981 50203255 -192461098 - AluJb SINE Alu -33 279 4 402 208 0 0 chr1 50203359 50203436 -192460917 + L1MC3 LINE L1 7208 7284 -501 2791 133 34 0 chr1 50203436 50203850 -192460503 + MSTA LTR MaLR 1 428 0 9602 164 26 14 chr1 50203850 50205249 -192459104 + MSTA-int LTR MaLR 1 1424 -227 1363 118 90 5 chr1 50205249 50205461 -192458892 + MER30 DNA MER1_type 1 230 0 9602 164 26 14 chr1 50205461 50205692 -192458661 + MSTA-int LTR MaLR 1424 1651 0 2753 119 44 5 chr1 50205692 50206103 -192458250 + MSTA LTR MaLR 1 427 -1 2510 223 20 25 chr1 50206225 50206773 -192457580 + LTR31 LTR ERV1 75 619 0 2158 196 38 19 chr1 50206773 50207242 -192457111 + L1MD3 LINE L1 7516 7993 -2 345 292 106 42 chr1 50207458 50207671 -192456682 + L1ME LINE L1 4761 4959 -1187 2279 101 0 10 chr1 50207671 50207969 -192456384 + AluSx SINE Alu 1 295 -17 345 292 106 42 chr1 50207969 50208132 -192456221 + L1ME LINE L1 4959 5161 -985 * 541 182 33 16 chr1 50208130 50208251 -192456102 + L1ME LINE L1 5415 5537 -629 1258 269 76 8 chr1 50208327 50208710 -192455643 + LTR16C LTR ERVL 83 491 0 1556 137 122 7 chr1 50209261 50209531 -192454822 + AluSg1 SINE Alu 1 301 -8 616 303 11 16 chr1 50209627 50209812 -192454541 + MIR SINE MIR 1 184 -78 507 262 89 42 chr1 50210661 50210852 -192453501 + MIR SINE MIR 9 208 -54 304 219 146 21 chr1 50210862 50210958 -192453395 + L2 LINE L2 3206 3313 0 354 262 269 0 chr1 50211206 50211351 -192453002 - MER5A DNA MER1_type -2 187 4 1035 273 14 0 chr1 50211363 50211583 -192452770 - MER58A DNA MER1_type -1 223 1 2097 145 0 3 chr1 50212008 50212319 -192452034 - AluJb SINE Alu -2 310 1 2599 115 193 28 chr1 50212398 50212902 -192451451 - LTR18B LTR ERVL -27 587 1 2432 91 0 7 chr1 50213419 50213726 -192450627 + AluSq SINE Alu 1 305 -8 257 347 41 8 chr1 50213738 50213859 -192450494 - LTR67 LTR ERVL -76 481 357 286 320 41 10 chr1 50214135 50214232 -192450121 - LTR67 LTR ERVL -352 205 106 2864 68 6 0 chr1 50214658 50215011 -192449342 + THE1A LTR MaLR 1 355 0 12026 84 4 15 chr1 50215011 50215385 -192448968 + THE1A-int LTR MaLR 1 378 -1202 2145 108 0 14 chr1 50215385 50215699 -192448654 - AluSx SINE Alu 0 310 1 12026 84 4 15 chr1 50215699 50216921 -192447432 + THE1A-int LTR MaLR 378 1580 0 2550 92 20 3 chr1 50216921 50217270 -192447083 + THE1A LTR MaLR 1 355 0 22 0 0 0 chr1 50217485 50217507 -192446846 + AT_rich Low_complexity Low_complexity 1 22 0 2050 158 10 56 chr1 50217796 50217851 -192446502 + MSTD LTR MaLR 1 57 -339 2241 116 0 0 chr1 50217851 50218145 -192446208 + AluSq SINE Alu 1 294 -19 2050 158 10 56 chr1 50218145 50218455 -192445898 + MSTD LTR MaLR 57 349 -47 1971 160 0 0 chr1 50218455 50218817 -192445536 + AluJb SINE Alu 1 362 0 2050 158 10 56 chr1 50218817 50218861 -192445492 + MSTD LTR MaLR 349 393 -3 1108 206 81 16 chr1 50218945 50219193 -192445160 - MLT1F LTR MaLR -4 538 275 428 206 39 10 chr1 50219193 50219295 -192445058 + L1M4 LINE L1 2467 2571 -3575 1176 34 13 27 chr1 50219375 50219524 -192444829 - SVA Other Other -1 1385 1239 390 145 0 13 chr1 50219680 50219756 -192444597 + MLT1G1 LTR MaLR 515 589 -6 286 122 0 0 chr1 50219845 50219886 -192444467 - MSTD LTR MaLR 0 396 356 840 212 30 52 chr1 50219905 50220115 -192444238 - MLT1F LTR MaLR -322 245 39 1839 127 0 89 chr1 50220115 50220439 -192443914 + AluSg SINE Alu 1 295 -15 840 212 30 52 chr1 50220439 50220459 -192443894 - MLT1F LTR MaLR -528 39 20 427 99 0 28 chr1 50220459 50220530 -192443823 - AluJo SINE Alu -9 303 235 1596 152 0 4 chr1 50220567 50220798 -192443555 - AluJo SINE Alu -82 230 1 347 290 225 38 chr1 50220823 50221192 -192443161 - L2 LINE L2 -32 3281 2844 4291 139 60 46 chr1 50221621 50222512 -192441841 + L1M4c LINE L1 17 919 -5465 751 185 0 116 chr1 50222512 50222582 -192441771 - FAM SINE Alu -149 172 95 786 146 7 36 chr1 50222582 50222719 -192441634 - AluJo/FLAM SINE Alu -169 133 1 751 185 0 116 chr1 50222719 50222837 -192441516 - FAM SINE Alu -226 95 6 6636 129 37 36 chr1 50222844 50223551 -192440802 + L1M4c LINE L1 914 1618 -4766 2073 134 3 0 chr1 50223551 50223854 -192440499 + AluSq SINE Alu 1 304 0 6636 129 37 36 chr1 50223854 50224089 -192440264 + L1M4c LINE L1 1618 1851 -4533 1715 200 0 29 chr1 50224089 50224404 -192439949 - AluJo SINE Alu -6 306 1 6636 129 37 36 chr1 50224404 50224463 -192439890 + L1M4c LINE L1 1851 1908 -4476 2094 127 14 0 chr1 50224463 50224747 -192439606 + AluSx SINE Alu 1 288 -24 6636 129 37 36 chr1 50224747 50225052 -192439301 + L1M4c LINE L1 1908 2225 -4159 1043 186 0 0 chr1 50225055 50225216 -192439137 + FRAM SINE Alu 1 161 -15 444 213 73 13 chr1 50225221 50225371 -192438982 + L1M4c LINE L1 2440 2598 -3784 896 194 19 7 chr1 50225390 50225545 -192438808 - FRAM SINE Alu -27 149 1 924 194 6 17 chr1 50225557 50225824 -192438529 + AluJb SINE Alu 112 376 0 4437 185 38 51 chr1 50225826 50226979 -192437374 + L1 LINE L1 3519 4656 -1490 590 270 0 0 chr1 50226981 50227107 -192437246 + FRAM SINE Alu 1 126 -50 748 175 7 0 chr1 50227188 50227331 -192437022 - AluSc SINE Alu 0 309 166 23 0 0 29 chr1 50227357 50227372 -192436981 + AT_rich Low_complexity Low_complexity 1 15 -18 2226 129 3 0 chr1 50227372 50227681 -192436672 + AluSx SINE Alu 1 310 -2 23 0 0 29 chr1 50227681 50227699 -192436654 + AT_rich Low_complexity Low_complexity 15 33 0 1891 166 3 16 chr1 50227701 50228008 -192436345 + AluJo SINE Alu 1 303 -9 2109 93 38 0 chr1 50228373 50228662 -192435691 + AluSq SINE Alu 1 300 -13 854 78 21 14 chr1 50229735 50229877 -192434476 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 1680 138 16 85 chr1 50229879 50230050 -192434303 - AluJo SINE Alu -26 286 144 2201 119 0 0 chr1 50230050 50230344 -192434009 + AluSx SINE Alu 1 294 -18 1680 138 16 85 chr1 50230344 50230477 -192433876 - AluJo SINE Alu -168 144 3 236 167 19 0 chr1 50230479 50230533 -192433820 - L1M LINE L1 -958 5333 5279 873 252 104 3 chr1 50230533 50230870 -192433483 - Tigger8 DNA MER2_type -191 475 105 1752 79 4 29 chr1 50230890 50231131 -192433222 + AluY SINE Alu 1 235 -76 2403 102 54 15 chr1 50231232 50231511 -192432842 - HSMAR1 DNA Mariner -874 413 113 207 0 0 0 chr1 50231511 50231534 -192432819 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2403 102 54 15 chr1 50231534 50231646 -192432707 - HSMAR1 DNA Mariner -1174 113 7 633 214 10 65 chr1 50231831 50232032 -192432321 + LTR41 LTR ERVL 1 190 -583 341 330 164 37 chr1 50232421 50233149 -192431204 + L2 LINE L2 1990 2809 -505 2469 245 86 48 chr1 50233202 50233253 -192431100 - HAL1 LINE L1 -1165 1342 1294 1743 195 0 16 chr1 50233253 50233566 -192430787 - AluJo SINE Alu -4 308 1 2469 245 86 48 chr1 50233566 50234535 -192429818 - HAL1 LINE L1 -1213 1294 283 1948 92 30 27 chr1 50234981 50235276 -192429077 - AluSg SINE Alu -14 296 1 223 135 0 0 chr1 50235806 50235843 -192428510 - L2 LINE L2 0 3272 3236 2273 156 30 46 chr1 50236554 50237029 -192427324 + MLT1C LTR MaLR 1 467 0 183 300 0 33 chr1 50237634 50237694 -192426659 - L2 LINE L2 -1 3271 3214 21 0 0 0 chr1 50237850 50237871 -192426482 + AT_rich Low_complexity Low_complexity 1 21 0 1469 38 0 11 chr1 50291245 50291428 -192372925 + L1PA4 LINE L1 5975 6155 0 207 167 0 0 chr1 50291444 50291486 -192372867 + (TA)n Simple_repeat Simple_repeat 2 43 0 2110 113 7 14 chr1 50291604 50291896 -192372457 + AluSx SINE Alu 1 290 -22 428 250 128 37 chr1 50292002 50292190 -192372163 - MLT1J LTR MaLR -68 443 239 309 209 0 0 chr1 50292396 50292463 -192371890 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 983 170 29 58 chr1 50292468 50292674 -192371679 - MLT2B1 LTR ERVL -39 481 282 460 323 43 0 chr1 50292725 50292886 -192371467 - MIR SINE MIR -70 192 25 520 220 38 104 chr1 50293252 50293390 -192370963 - MIR SINE MIR -32 230 100 790 207 0 46 chr1 50293390 50293564 -192370789 + FRAM SINE Alu 1 166 0 520 220 38 104 chr1 50293564 50293608 -192370745 - MIR SINE MIR -162 100 55 2027 165 22 8 chr1 50293660 50294018 -192370335 + MLT1A1 LTR MaLR 1 363 -2 1014 292 99 75 chr1 50294019 50294724 -192369629 - L2 LINE L2 -362 2952 2231 279 235 74 0 chr1 50294731 50294811 -192369542 - ORSL DNA AcHobo 0 275 190 2459 108 19 60 chr1 50294811 50295185 -192369168 + MSTA LTR MaLR 1 358 -70 918 129 0 50 chr1 50295185 50295325 -192369028 - FLAM_C SINE Alu 0 133 1 2459 108 19 60 chr1 50295325 50295368 -192368985 + MSTA LTR MaLR 358 401 -27 1418 153 0 42 chr1 50295375 50295611 -192368742 - AluSg/x SINE Alu -2 310 85 2274 106 0 0 chr1 50295689 50296001 -192368352 - AluSx SINE Alu 0 312 1 878 154 42 0 chr1 50296008 50296151 -192368202 - FRAM SINE Alu -30 146 1 439 134 54 71 chr1 50296151 50296235 -192368118 - ORSL DNA AcHobo -124 151 68 2333 110 0 0 chr1 50296235 50296536 -192367817 + AluSg SINE Alu 1 301 -9 439 134 54 71 chr1 50296536 50296563 -192367790 - ORSL DNA AcHobo -207 68 42 484 278 153 24 chr1 50296581 50296915 -192367438 - MLT1L LTR MaLR 0 615 239 656 145 118 26 chr1 50296916 50297068 -192367285 + MLT1A1 LTR MaLR 1 166 -199 1017 127 7 0 chr1 50297068 50297218 -192367135 - AluJo SINE Alu -5 307 157 689 179 0 0 chr1 50297219 50297325 -192367028 - AluJo SINE Alu -205 107 2 1124 163 29 10 chr1 50297325 50297534 -192366819 + MLT1A1 LTR MaLR 152 364 -1 372 314 0 0 chr1 50297534 50297635 -192366718 - MLT1L LTR MaLR -373 242 142 196 289 26 0 chr1 50297697 50297773 -192366580 - L2 LINE L2 -1096 2218 2141 407 219 67 0 chr1 50297924 50298029 -192366324 + MIR SINE MIR 29 140 -68 202 337 0 23 chr1 50298097 50298183 -192366170 - L2 LINE L2 -555 2759 2676 877 216 78 23 chr1 50298829 50299047 -192365306 + MIR SINE MIR 33 262 0 611 254 85 11 chr1 50299063 50299240 -192365113 - MIR SINE MIR -59 203 14 535 262 157 14 chr1 50300480 50300690 -192363663 + MIR SINE MIR 20 259 -3 546 183 17 43 chr1 50300897 50301012 -192363341 - MER81 DNA DNA -2 112 1 379 347 113 32 chr1 50301312 50301699 -192362654 - L2 LINE L2 -209 3063 2652 573 200 0 0 chr1 50301702 50301817 -192362536 + AluJb SINE Alu 195 309 -3 2529 75 0 0 chr1 50301945 50302253 -192362100 + AluY SINE Alu 1 308 -3 403 130 100 80 chr1 50302253 50302353 -192362000 + AluJb SINE Alu 134 235 -77 213 258 0 0 chr1 50302453 50302546 -192361807 + G-rich Low_complexity Low_complexity 1 93 0 309 109 0 18 chr1 50302548 50302603 -192361750 + AluJb SINE Alu 244 297 -5 296 290 245 18 chr1 50302610 50302896 -192361457 - L2 LINE L2 -767 2547 2197 778 268 64 8 chr1 50302941 50303191 -192361162 - L2 LINE L2 -1264 2050 1787 385 252 118 50 chr1 50303222 50303460 -192360893 + L1ME LINE L1 5567 5820 -301 1968 126 35 0 chr1 50303469 50303755 -192360598 + AluSx SINE Alu 1 296 -16 1772 106 92 7 chr1 50303764 50304037 -192360316 + AluSx SINE Alu 1 296 -16 2066 123 3 3 chr1 50304077 50304370 -192359983 - AluJb SINE Alu -19 293 1 21 0 0 0 chr1 50305007 50305028 -192359325 + GC_rich Low_complexity Low_complexity 1 21 0 2144 116 38 0 chr1 50307610 50307902 -192356451 + AluSx SINE Alu 1 303 -9 342 289 59 30 chr1 50308544 50308679 -192355674 - L2 LINE L2 -1 3312 3174 245 286 155 0 chr1 50310051 50310135 -192354218 + L2 LINE L2 3171 3267 -5 2297 113 7 0 chr1 50310186 50310486 -192353867 + AluSx SINE Alu 1 302 -10 744 126 24 31 chr1 50312888 50313015 -192351338 + L2 LINE L2 3187 3312 -1 753 90 8 16 chr1 50313793 50313915 -192350438 + L1PB1 LINE L1 5929 6049 -102 1839 82 16 0 chr1 50314062 50314307 -192350046 - AluY SINE Alu -62 249 1 2083 128 3 0 chr1 50314307 50314610 -192349743 - AluSx SINE Alu 0 304 1 1299 108 89 7 chr1 50314635 50314904 -192349449 - MER4-int LTR ERV1 -3571 3027 2737 1165 142 21 0 chr1 50314904 50315094 -192349259 + LTR8 LTR ERV1 1 194 -497 1046 120 9 1 chr1 50315094 50315270 -192349083 - MER4-int LTR ERV1 -4109 2489 1455 988 115 45 6 chr1 50315390 50315569 -192348784 - AluSg/x SINE Alu 0 306 122 1723 124 108 35 chr1 50315569 50315931 -192348422 - MER4-int LTR ERV1 -3027 2919 2585 2142 121 34 0 chr1 50315931 50316228 -192348125 + AluSp SINE Alu 1 307 -6 1723 124 108 35 chr1 50316228 50316264 -192348089 - MER4-int LTR ERV1 -3361 2585 1763 337 369 13 7 chr1 50316902 50317051 -192347302 - MIR3 SINE MIR -3 205 56 456 320 58 0 chr1 50317175 50317331 -192347022 - MIR SINE MIR -5 257 93 1247 113 209 42 chr1 50317580 50317842 -192346511 + AluSg1 SINE Alu 1 302 0 1583 147 138 3 chr1 50317842 50318175 -192346178 + LTR29 LTR ERV1 17 394 -228 880 122 8 0 chr1 50318207 50318330 -192346023 + FLAM_C SINE Alu 1 124 -19 1178 174 118 81 chr1 50318359 50318791 -192345562 + LTR7 LTR ERV1 1 448 -2 3442 99 64 53 chr1 50318961 50319122 -192345231 - MER4-int LTR ERV1 -2026 4572 4414 2500 73 0 0 chr1 50319122 50319424 -192344929 - AluY SINE Alu -9 302 1 3442 99 64 53 chr1 50319424 50319868 -192344485 - MER4-int LTR ERV1 -2184 4414 3960 1827 107 0 0 chr1 50319870 50320103 -192344250 + AluSx SINE Alu 1 233 -79 1924 105 98 12 chr1 50320108 50320163 -192344190 - MER4-int LTR ERV1 -3383 3215 3166 2162 131 0 28 chr1 50320163 50320483 -192343870 - AluSx SINE Alu -1 311 1 1924 105 98 12 chr1 50320483 50320857 -192343496 - MER4-int LTR ERV1 -3432 3166 2749 307 65 0 0 chr1 50320859 50320905 -192343448 - AluSp SINE Alu -4 299 254 1058 173 6 6 chr1 50320923 50321102 -192343251 - AluSp SINE Alu -134 179 1 1778 174 35 0 chr1 50321238 50321355 -192342998 + AluJo SINE Alu 1 112 -200 315 71 0 0 chr1 50321355 50321397 -192342956 + (TAA)n Simple_repeat Simple_repeat 3 44 0 1778 174 35 0 chr1 50321397 50321567 -192342786 + AluJo SINE Alu 112 298 -14 1240 175 27 109 chr1 50321665 50321996 -192342357 - AluYb8 SINE Alu -13 305 2 242 293 61 10 chr1 50322151 50322250 -192342103 - L2 LINE L2 -542 2772 2669 464 250 62 31 chr1 50322279 50322471 -192341882 - MIR SINE MIR 0 262 65 2453 92 87 63 chr1 50322500 50322724 -192341629 - MSTC LTR MaLR 0 428 211 1546 197 28 24 chr1 50322724 50323014 -192341339 - AluJo SINE Alu -21 291 1 2453 92 87 63 chr1 50323014 50323126 -192341227 - MSTC LTR MaLR -217 211 78 2639 50 0 0 chr1 50323126 50323428 -192340925 + AluY SINE Alu 1 302 -9 2453 92 87 63 chr1 50323428 50323504 -192340849 - MSTC LTR MaLR -350 78 5 962 206 72 0 chr1 50323508 50323688 -192340665 - MER58A DNA MER1_type -5 219 27 2364 100 0 3 chr1 50324399 50324699 -192339654 - AluSg SINE Alu -11 299 1 22 0 0 0 chr1 50324965 50324987 -192339366 + AT_rich Low_complexity Low_complexity 1 22 0 763 324 77 45 chr1 50325074 50325571 -192338782 - L2 LINE L2 0 3272 2736 448 120 130 30 chr1 50325582 50325682 -192338671 + L1MB2 LINE L1 4745 4854 -1292 3801 145 8 21 chr1 50325707 50326268 -192338085 + L1MB2 LINE L1 5414 5966 -205 2079 127 7 13 chr1 50326268 50326568 -192337785 + AluJb SINE Alu 1 298 -14 3801 145 8 21 chr1 50326568 50326656 -192337697 + L1MB2 LINE L1 5966 6054 -117 1743 168 16 26 chr1 50326656 50326965 -192337388 + AluJo SINE Alu 1 306 -6 2253 97 7 3 chr1 50326982 50327282 -192337071 + AluSx SINE Alu 1 301 -11 636 181 90 45 chr1 50327310 50327443 -192336910 + FRAM SINE Alu 27 165 -11 2417 73 36 0 chr1 50327443 50327745 -192336608 + AluSp SINE Alu 1 313 0 459 145 36 48 chr1 50327747 50327859 -192336494 + L1MB2 LINE L1 6057 6132 -39 226 200 20 0 chr1 50328117 50328167 -192336186 - L2 LINE L2 0 3313 3263 212 232 188 0 chr1 50328934 50329003 -192335350 - L2 LINE L2 -1 3312 3231 411 248 117 51 chr1 50329032 50329246 -192335107 + MIR SINE MIR 19 246 -16 2011 229 72 58 chr1 50329419 50330109 -192334244 + L2 LINE L2 2301 3004 -309 751 135 71 8 chr1 50330302 50330428 -192333925 + AluJo SINE Alu 1 134 -178 416 216 62 0 chr1 50330465 50330562 -192333791 + L2 LINE L2 3211 3313 0 21 0 0 0 chr1 50330755 50330776 -192333577 + AT_rich Low_complexity Low_complexity 1 21 0 2074 131 7 10 chr1 50330900 50331205 -192333148 - AluSx SINE Alu -8 304 1 1953 156 0 17 chr1 50331624 50331925 -192332428 + AluJo SINE Alu 1 296 -16 1193 116 12 0 chr1 50332107 50332271 -192332082 - AluSg/x SINE Alu -12 300 135 281 306 73 8 chr1 50332396 50332520 -192331833 + MLT1H LTR MaLR 31 162 -387 357 241 144 43 chr1 50332668 50332855 -192331498 + MLT1H LTR MaLR 344 549 0 1742 171 9 29 chr1 50332973 50333288 -192331065 - AluJo SINE Alu -3 309 1 1927 175 0 0 chr1 50333366 50333652 -192330701 - AluJb SINE Alu -24 288 3 2380 65 10 10 chr1 50333704 50333997 -192330356 + AluSp SINE Alu 1 293 -20 28 0 0 0 chr1 50334329 50334357 -192329996 + AT_rich Low_complexity Low_complexity 1 28 0 458 136 73 18 chr1 50334951 50335061 -192329292 + L1ME3A LINE L1 6049 6164 -6 229 310 80 0 chr1 50335162 50335275 -192329078 - MIR SINE MIR -3 259 138 * 449 180 57 16 chr1 50335261 50335383 -192328970 + L2 LINE L2 1957 2083 -1231 237 314 23 0 chr1 50335440 50335526 -192328827 - L1MC4 LINE L1 -1339 6703 6616 210 37 0 0 chr1 50335526 50335553 -192328800 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 1437 155 0 96 chr1 50335553 50335824 -192328529 - AluJo SINE Alu -30 282 38 262 147 27 120 chr1 50335862 50335937 -192328416 - MIR SINE MIR -89 173 106 187 387 92 14 chr1 50336255 50336397 -192327956 - MER5A DNA MER1_type -4 185 33 233 167 0 21 chr1 50336764 50336812 -192327541 + L1PA7 LINE L1 6093 6139 -15 2335 104 7 0 chr1 50338531 50338840 -192325513 - AluSx SINE Alu -1 311 1 1678 154 18 78 chr1 50339854 50339986 -192324367 + AluJb SINE Alu 1 139 -173 2038 113 4 4 chr1 50339986 50340260 -192324093 + AluSq SINE Alu 1 274 -39 1678 154 18 78 chr1 50340260 50340458 -192323895 + AluJb SINE Alu 139 311 -1 306 0 0 0 chr1 50340458 50340492 -192323861 + (TA)n Simple_repeat Simple_repeat 2 35 0 1354 190 139 0 chr1 50340548 50340806 -192323547 + AluSx SINE Alu 5 298 -14 194 295 211 11 chr1 50341203 50341298 -192323055 - L2 LINE L2 -21 3251 3138 22 0 0 0 chr1 50341310 50341332 -192323021 + AT_rich Low_complexity Low_complexity 1 22 0 203 333 146 51 chr1 50341618 50341994 -192322359 - L2 LINE L2 -556 2758 2419 1549 151 77 25 chr1 50341994 50342279 -192322074 + AluJo SINE Alu 1 300 -12 203 333 146 51 chr1 50342279 50342554 -192321799 - L2 LINE L2 -895 2419 2172 2192 109 0 7 chr1 50342554 50342885 -192321468 + AluSq SINE Alu 1 329 0 189 0 0 0 chr1 50342886 50342907 -192321446 + (TATG)n Simple_repeat Simple_repeat 4 24 0 203 333 146 51 chr1 50342907 50343157 -192321196 - L2 LINE L2 -1141 2173 1767 195 42 0 0 chr1 50343202 50343226 -192321127 + (A)n Simple_repeat Simple_repeat 1 24 0 710 169 0 0 chr1 50343240 50343358 -192320995 + AluJb SINE Alu 34 151 -161 2207 91 7 10 chr1 50343377 50343674 -192320679 + AluSp SINE Alu 12 307 -6 2415 85 0 0 chr1 50343676 50343970 -192320383 + AluY SINE Alu 3 296 -15 844 184 6 13 chr1 50343970 50344128 -192320225 + AluJb SINE Alu 134 290 -22 771 237 25 90 chr1 50344157 50344294 -192320059 - MIR SINE MIR 0 262 151 430 198 73 0 chr1 50344294 50344390 -192319963 - U13 snRNA snRNA 0 104 2 771 237 25 90 chr1 50344390 50344531 -192319822 - MIR SINE MIR -111 151 2 238 307 42 60 chr1 50344752 50344918 -192319435 + MIR SINE MIR 45 207 -55 2338 96 0 0 chr1 50344920 50345212 -192319141 + AluSx SINE Alu 1 292 -20 1987 154 0 0 chr1 50345224 50345529 -192318824 + AluSx SINE Alu 1 305 -7 2303 91 3 3 chr1 50346462 50346760 -192317593 - AluSx SINE Alu -14 298 1 829 135 0 0 chr1 50347498 50347624 -192316729 + FLAM_C SINE Alu 1 126 -7 236 146 0 0 chr1 50347624 50347665 -192316688 + L1MB4 LINE L1 6140 6180 0 1291 174 0 5 chr1 50347686 50347893 -192316460 + MLT1A1 LTR MaLR 160 365 0 301 354 16 67 chr1 50348538 50348892 -192315461 + L2 LINE L2 2602 3021 -251 692 247 137 4 chr1 50349047 50349274 -192315079 + MIR SINE MIR 2 258 -4 2149 193 56 20 chr1 50349412 50349857 -192314496 + MLT1C LTR MaLR 7 467 0 2122 123 10 3 chr1 50350770 50350943 -192313410 - AluSx SINE Alu -2 310 133 2402 91 10 0 chr1 50350943 50351239 -192313114 - AluSg SINE Alu -11 299 1 2122 123 10 3 chr1 50351239 50351373 -192312980 - AluSx SINE Alu -179 133 1 1910 127 4 4 chr1 50351385 50351652 -192312701 - AluSx SINE Alu -45 267 1 621 151 0 0 chr1 50351717 50351810 -192312543 + AluJ/FLAM SINE Alu 2 94 -218 1822 169 0 0 chr1 50352117 50352435 -192311918 + AluJb SINE Alu 1 318 0 1528 134 0 0 chr1 50352705 50352914 -192311439 - AluSx SINE Alu -103 209 1 2477 76 0 3 chr1 50352922 50353223 -192311130 - AluSq SINE Alu -12 301 2 2352 78 7 3 chr1 50353260 50353553 -192310800 - AluSq SINE Alu -13 300 7 9777 148 11 34 chr1 50353653 50356599 -192307754 + HERVH LTR ERV1 305 3587 -4126 3051 190 22 38 chr1 50356593 50357329 -192307024 + HERVH LTR ERV1 3806 4529 -3184 * 1034 194 5 0 chr1 50357329 50357525 -192306828 + HERVH LTR ERV1 6489 6685 -1028 1506 147 13 4 chr1 50357525 50357750 -192306603 - AluSx SINE Alu -85 227 1 3328 144 83 23 chr1 50357750 50358438 -192305915 - MER4-int LTR ERV1 -4877 1721 993 247 159 0 45 chr1 50358459 50358503 -192305850 - LTR49 LTR ERV1 -283 312 271 253 174 14 58 chr1 50358515 50358584 -192305769 - MER4-int LTR ERV1 -5848 750 685 2269 94 79 8 chr1 50358674 50359049 -192305304 - LTR7 LTR ERV1 -2 448 1 702 84 25 42 chr1 50359049 50359168 -192305185 - HERVH LTR ERV1 0 7713 7597 249 304 20 20 chr1 50359168 50359270 -192305083 - MLT1A1 LTR MaLR -262 103 2 555 256 269 36 chr1 50359585 50359972 -192304381 - L2 LINE L2 -33 3280 2804 226 337 84 12 chr1 50360093 50360259 -192304094 + L2 LINE L2 2851 3028 -244 218 277 128 0 chr1 50360387 50360481 -192303872 + L2 LINE L2 3208 3313 0 1741 138 31 50 chr1 50360552 50360870 -192303483 - AluJb SINE Alu 0 312 1 2512 52 7 16 chr1 50361013 50361321 -192303032 - AluSq SINE Alu -8 305 1 237 330 26 17 chr1 50361376 50361491 -192302862 + L2 LINE L2 2538 2653 -661 206 198 20 119 chr1 50361577 50361678 -192302675 + L2 LINE L2 2955 3045 -227 237 309 144 0 chr1 50362582 50362679 -192301674 - MIR3 SINE MIR -31 177 67 800 242 78 20 chr1 50362894 50363138 -192301215 - MLT1J2 LTR MaLR -192 258 1 1795 123 0 19 chr1 50363241 50363510 -192300843 - AluSx SINE Alu -1 311 48 182 271 60 60 chr1 50363546 50363608 -192300745 + MIR SINE MIR 130 191 -71 1863 168 3 7 chr1 50363608 50363906 -192300447 + AluJo SINE Alu 1 297 -15 182 271 60 60 chr1 50363906 50363976 -192300377 + MIR SINE MIR 190 262 0 243 353 37 0 chr1 50364239 50364375 -192299978 - L2 LINE L2 -444 2870 2730 1220 181 28 4 chr1 50364443 50364691 -192299662 + MIR SINE MIR 3 256 -6 2265 109 0 26 chr1 50364698 50365011 -192299342 + AluSx SINE Alu 1 305 -7 2426 88 0 0 chr1 50365028 50365322 -192299031 + AluSx SINE Alu 1 294 -18 227 108 27 0 chr1 50365357 50365394 -192298959 + L2 LINE L2 3262 3299 -14 1956 128 61 7 chr1 50365421 50365717 -192298636 + AluSx SINE Alu 1 312 0 609 160 0 0 chr1 50365731 50365848 -192298505 + FRAM SINE Alu 54 170 0 1156 158 0 6 chr1 50366045 50366222 -192298131 + FRAM SINE Alu 1 176 0 236 365 70 0 chr1 50366223 50366311 -192298042 - L2 LINE L2 -189 3083 3003 2315 144 15 0 chr1 50366311 50366650 -192297703 + MER7A DNA MER2_type 1 342 -4 236 365 70 0 chr1 50366650 50366717 -192297636 - L2 LINE L2 -269 3003 2917 2311 97 13 7 chr1 50366827 50367137 -192297216 + AluSx SINE Alu 1 312 0 444 191 36 12 chr1 50367219 50367303 -192297050 + MER5A DNA MER1_type 16 101 -88 1355 139 11 96 chr1 50367393 50367674 -192296679 + AluJb SINE Alu 36 292 -20 2352 85 7 3 chr1 50368067 50368362 -192295991 - AluSc SINE Alu -13 296 1 198 326 84 21 chr1 50368877 50368972 -192295381 - L2 LINE L2 -5 3308 3208 914 128 16 0 chr1 50368980 50369105 -192295248 + AluJo/FLAM SINE Alu 1 127 -175 787 174 0 0 chr1 50369105 50369220 -192295133 - AluSp/q SINE Alu -14 299 185 23100 25 2 0 chr1 50369320 50372614 -192291739 + L1PA4 LINE L1 2690 5989 -166 821 240 205 59 chr1 50372834 50373243 -192291110 + MLT1H1 LTR MaLR 87 555 0 209 232 73 61 chr1 50373245 50373327 -192291026 + L2 LINE L2 3186 3268 -4 1507 203 10 14 chr1 50373682 50373978 -192290375 - AluJo SINE Alu -17 295 1 2115 110 0 44 chr1 50374393 50374711 -192289642 - AluSx SINE Alu -8 304 1 247 307 108 30 chr1 50375153 50375319 -192289034 + MLT1L LTR MaLR 429 607 -8 344 301 128 13 chr1 50375524 50375680 -192288673 + MIR SINE MIR 88 261 -1 255 31 0 0 chr1 50375926 50375958 -192288395 + (CA)n Simple_repeat Simple_repeat 2 33 0 1475 144 35 35 chr1 50375967 50376224 -192288129 - AluJo SINE Alu -26 286 30 645 194 113 25 chr1 50376864 50377024 -192287329 + MIR SINE MIR 19 192 -70 26 0 0 0 chr1 50377072 50377098 -192287255 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr1 50377109 50377131 -192287222 + AT_rich Low_complexity Low_complexity 1 22 0 2193 79 69 3 chr1 50377140 50377431 -192286922 + AluSq SINE Alu 1 310 -3 1029 161 0 7 chr1 50377432 50377587 -192286766 - FRAM SINE Alu -22 154 1 570 156 0 10 chr1 50377754 50377850 -192286503 + MER4A LTR ERV1 4 98 -566 2943 84 144 16 chr1 50377859 50377963 -192286390 - LTR19A LTR ERV1 -1 485 396 2116 82 11 14 chr1 50377963 50378273 -192286080 - AluSc SINE Alu 0 309 1 2943 84 144 16 chr1 50378273 50378597 -192285756 - LTR19A LTR ERV1 -90 396 1 2106 119 0 19 chr1 50378631 50378769 -192285584 + AluSq SINE Alu 1 140 -173 2546 41 0 0 chr1 50378769 50379063 -192285290 + AluY SINE Alu 1 294 -17 2106 119 0 19 chr1 50379063 50379235 -192285118 + AluSq SINE Alu 140 305 -8 254 114 0 0 chr1 50379236 50379271 -192285082 + Alu SINE Alu 1 35 -266 3479 136 30 5 chr1 50379277 50379844 -192284509 - L1MA4A LINE L1 -230 6073 5493 1819 157 3 31 chr1 50379845 50379882 -192284471 - AluJb SINE Alu -2 310 273 216 67 0 0 chr1 50379882 50379912 -192284441 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1819 157 3 31 chr1 50379912 50380193 -192284160 - AluJb SINE Alu -39 273 1 1005 185 32 0 chr1 50380195 50380384 -192283969 - AluJo SINE Alu -13 299 105 1707 133 17 87 chr1 50380384 50380848 -192283505 - L1MA4A LINE L1 -743 5403 5043 1933 166 0 10 chr1 50380848 50381027 -192283326 - AluJo SINE Alu 0 312 136 1876 174 0 7 chr1 50381027 50381325 -192283028 - AluJb SINE Alu -16 296 1 1933 166 0 10 chr1 50381325 50381453 -192282900 - AluJo SINE Alu -176 136 8 1948 70 8 0 chr1 50381459 50381703 -192282650 - AluSp SINE Alu -5 308 63 1711 130 4 26 chr1 50381805 50381935 -192282418 - AluJb SINE Alu -49 263 141 2275 114 0 0 chr1 50381935 50382234 -192282119 - AluSp SINE Alu -14 299 1 1711 130 4 26 chr1 50382234 50382372 -192281981 - AluJb SINE Alu -171 141 1 331 226 241 8 chr1 50382426 50382559 -192281794 + Charlie7 DNA MER1_type 1 164 -2448 2451 170 49 55 chr1 50382597 50383103 -192281250 + MLT1D LTR MaLR 1 503 -2 2251 117 0 13 chr1 50383359 50383667 -192280686 + AluSx SINE Alu 1 304 -8 2299 122 0 0 chr1 50383735 50384046 -192280307 + AluSq SINE Alu 1 311 -2 275 315 171 0 chr1 50384239 50384350 -192280003 - MIR SINE MIR -112 150 21 192 77 0 0 chr1 50384702 50384728 -192279625 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 1803 171 9 22 chr1 50384728 50385044 -192279309 + AluJo SINE Alu 1 312 0 2339 100 3 0 chr1 50385100 50385401 -192278952 - AluSp SINE Alu -11 302 1 1417 166 31 0 chr1 50385621 50385850 -192278503 + AluJb SINE Alu 1 236 -76 219 232 0 0 chr1 50385853 50385909 -192278444 + A-rich Low_complexity Low_complexity 1 56 0 618 263 89 11 chr1 50387051 50387149 -192277204 - MIR SINE MIR -10 252 163 2225 115 3 6 chr1 50387149 50387462 -192276891 - AluSx SINE Alu 0 312 1 618 263 89 11 chr1 50387462 50387542 -192276811 - MIR SINE MIR -99 163 60 412 325 12 12 chr1 50387662 50387822 -192276531 - MIR SINE MIR -40 222 63 * 423 181 350 6 chr1 50387820 50387980 -192276373 + L2 LINE L2 2248 2462 -852 21 57 0 0 chr1 50388002 50388037 -192276316 + AT_rich Low_complexity Low_complexity 1 35 0 882 155 0 0 chr1 50388129 50388258 -192276095 + AluJb SINE Alu 1 129 -183 194 194 15 0 chr1 50388258 50388325 -192276028 + (TA)n Simple_repeat Simple_repeat 1 68 0 1101 143 0 18 chr1 50388334 50388502 -192275851 + AluJb SINE Alu 127 291 -21 1646 181 3 30 chr1 50388560 50388858 -192275495 + AluJo SINE Alu 1 290 -22 237 330 52 0 chr1 50388865 50388980 -192275373 + HAL1 LINE L1 1540 1660 -847 1852 144 3 35 chr1 50388987 50389299 -192275054 + AluJo SINE Alu 5 306 -6 331 253 58 0 chr1 50389299 50389386 -192274967 + L2 LINE L2 2538 2629 -685 2240 238 143 59 chr1 50389396 50389716 -192274637 - HAL1 LINE L1 -14 2493 2201 1289 171 126 27 chr1 50389716 50389979 -192274374 - AluJo SINE Alu -23 289 1 2240 238 143 59 chr1 50389979 50390109 -192274244 - HAL1 LINE L1 -306 2201 2083 2730 102 17 0 chr1 50390109 50390461 -192273892 + THE1B LTR MaLR 5 362 -2 2240 238 143 59 chr1 50390461 50391102 -192273251 - HAL1 LINE L1 -424 2083 1309 23 33 0 0 chr1 50391188 50391218 -192273135 + AT_rich Low_complexity Low_complexity 1 30 0 502 308 107 68 chr1 50391264 50391703 -192272650 - HAL1 LINE L1 -1813 694 239 779 301 246 24 chr1 50391735 50392398 -192271955 - L2 LINE L2 -55 3258 2422 2066 112 32 0 chr1 50392507 50392784 -192271569 + AluSx SINE Alu 6 291 -21 2281 105 0 3 chr1 50392941 50393237 -192271116 + AluSq SINE Alu 1 295 -18 187 53 26 26 chr1 50393361 50393399 -192270954 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1528 178 8 89 chr1 50393470 50393829 -192270524 + LTR8A LTR ERV1 49 378 -349 2319 119 12 29 chr1 50393882 50394227 -192270126 - MER1B DNA MER1_type 0 339 1 1016 144 148 61 chr1 50394227 50394487 -192269866 + LTR8A LTR ERV1 434 716 -11 477 156 13 13 chr1 50394497 50394574 -192269779 - AluJ/FLAM SINE Alu -234 78 2 253 309 62 0 chr1 50394606 50394687 -192269666 - MIR SINE MIR -115 147 62 1472 159 101 8 chr1 50395356 50395613 -192268740 + AluJo SINE Alu 1 281 -31 335 119 0 17 chr1 50396186 50396245 -192268108 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 879 184 134 0 chr1 50397323 50397502 -192266851 - MER3 DNA MER1_type -2 207 5 198 214 24 0 chr1 50397537 50397579 -192266774 + L2 LINE L2 3271 3313 0 213 39 0 0 chr1 50398165 50398191 -192266162 + (CAA)n Simple_repeat Simple_repeat 2 27 0 937 226 113 9 chr1 50398240 50398452 -192265901 - MIR SINE MIR 0 262 29 1622 107 36 13 chr1 50398457 50398681 -192265672 - MER30 DNA MER1_type 0 230 2 1220 173 0 0 chr1 50398693 50398890 -192265463 - AluJb SINE Alu -3 309 113 692 160 0 9 chr1 50398943 50399049 -192265304 - AluJb SINE Alu -197 115 11 1976 109 32 124 chr1 50399108 50399410 -192264943 - L1MA7 LINE L1 -61 6230 5980 2370 81 0 7 chr1 50399410 50399705 -192264648 - AluSc SINE Alu -16 293 1 1976 109 32 124 chr1 50399705 50399844 -192264509 - L1MA7 LINE L1 -311 5980 5830 1925 102 15 4 chr1 50399846 50400112 -192264241 - AluSp SINE Alu -6 307 39 484 189 158 0 chr1 50400114 50400200 -192264153 - L1 LINE L1 -986 5160 5089 2491 81 0 0 chr1 50400200 50400509 -192263844 - AluY SINE Alu -1 310 2 484 189 158 0 chr1 50400509 50400549 -192263804 - L1 LINE L1 -1057 5089 5014 460 229 33 26 chr1 50400682 50400835 -192263518 + L1ME4a LINE L1 5967 6120 -1 465 188 0 0 chr1 50401455 50401540 -192262813 + L1MA3 LINE L1 6220 6304 -1 2351 92 0 0 chr1 50401601 50401893 -192262460 - AluSc SINE Alu -15 294 3 191 415 0 9 chr1 50402029 50402135 -192262218 + L2 LINE L2 3192 3296 -17 2337 89 0 3 chr1 50402143 50402436 -192261917 + AluSq SINE Alu 1 292 -21 262 197 140 43 chr1 50402755 50402849 -192261504 + 7SLRNA srpRNA srpRNA 223 308 -12 1751 158 3 58 chr1 50402867 50403177 -192261176 - AluJb SINE Alu -19 293 1 2287 71 0 71 chr1 50403185 50403508 -192260845 - AluSc SINE Alu -9 300 1 1485 178 12 4 chr1 50403630 50403883 -192260470 + AluJb SINE Alu 35 289 -23 2190 93 111 27 chr1 50404693 50405026 -192259327 + L1PA8A LINE L1 5770 6130 -1 2312 103 0 0 chr1 50405073 50405364 -192258989 - AluSx SINE Alu -21 291 1 2014 81 0 0 chr1 50405376 50405670 -192258683 - AluSg SINE Alu 0 310 40 2240 105 0 16 chr1 50405917 50406231 -192258122 + AluY SINE Alu 1 309 -2 8040 127 47 17 chr1 50407340 50408010 -192256343 + L1MA3 LINE L1 3774 4423 -1882 2056 134 7 7 chr1 50408010 50408308 -192256045 + AluJo SINE Alu 1 298 -14 8040 127 47 17 chr1 50408308 50408502 -192255851 + L1MA3 LINE L1 4423 4610 -1695 2244 100 3 26 chr1 50408502 50408811 -192255542 + AluSx SINE Alu 1 302 -10 8040 127 47 17 chr1 50408811 50409600 -192254753 + L1MA3 LINE L1 4610 5374 -931 2037 117 31 3 chr1 50409600 50409890 -192254463 + AluSx SINE Alu 1 298 -14 8040 127 47 17 chr1 50409890 50410681 -192253672 + L1MA3 LINE L1 5374 6303 -2 811 280 19 9 chr1 50410732 50410943 -192253410 - MIR SINE MIR -4 258 46 239 300 40 10 chr1 50411029 50411129 -192253224 + L1M4 LINE L1 2429 2531 -3615 1870 166 0 3 chr1 50411130 50411431 -192252922 - AluJb SINE Alu -12 300 1 2595 56 0 0 chr1 50411443 50411747 -192252606 - AluY SINE Alu -7 304 1 1498 174 12 4 chr1 50411955 50412208 -192252145 + AluJb SINE Alu 35 289 -23 2190 93 111 27 chr1 50413018 50413351 -192251002 + L1PA8A LINE L1 5770 6130 -1 2055 102 0 0 chr1 50413398 50413662 -192250691 - AluSx SINE Alu -21 291 28 259 289 58 58 chr1 50413752 50413856 -192250497 - L2 LINE L2 -6 3266 3163 22 56 0 0 chr1 50414040 50414076 -192250277 + AT_rich Low_complexity Low_complexity 1 36 0 243 331 62 54 chr1 50414109 50414239 -192250114 - MIR3 SINE MIR -73 135 5 1215 119 5 68 chr1 50414374 50414462 -192249891 + L1PB2 LINE L1 5947 6039 -112 2421 84 0 0 chr1 50414462 50414759 -192249594 + AluSc SINE Alu 1 297 -12 1215 119 5 68 chr1 50414759 50414889 -192249464 + L1PB2 LINE L1 6039 6151 0 239 52 0 86 chr1 50414952 50415010 -192249343 + (TTTCC)n Simple_repeat Simple_repeat 2 54 0 1942 121 0 7 chr1 50415048 50415328 -192249025 - AluSx SINE Alu -10 302 25 1006 51 8 0 chr1 50415440 50415558 -192248795 - AluYa5/8 SINE Alu -191 119 1 1659 107 13 9 chr1 50415620 50415853 -192248500 + AluSg/x SINE Alu 65 298 -12 1970 191 40 74 chr1 50416004 50416529 -192247824 + LTR54 LTR ERV1 4 510 0 598 209 109 87 chr1 50416537 50416649 -192247704 + LTR49-int LTR ERV1 1908 2016 -4315 1807 165 7 10 chr1 50416649 50416952 -192247401 + AluJb SINE Alu 5 306 -6 598 209 109 87 chr1 50416952 50417069 -192247284 + LTR49-int LTR ERV1 2016 2142 -4189 355 233 0 0 chr1 50417083 50417156 -192247197 + LTR49-int LTR ERV1 2112 2184 -4147 2242 98 0 7 chr1 50417574 50417870 -192246483 + AluSc SINE Alu 1 294 -15 644 87 87 29 chr1 50417996 50418100 -192246253 + MER46A DNA MER2_type 126 235 -1 422 364 20 15 chr1 50418119 50418317 -192246036 - L2 LINE L2 -203 3069 2871 1418 150 0 14 chr1 50418401 50418614 -192245739 + AluJb SINE Alu 1 210 -102 283 186 243 0 chr1 50418614 50418684 -192245669 + AluJo SINE Alu 95 181 -121 565 176 0 0 chr1 50418686 50418771 -192245582 - AluJ/FLAM SINE Alu -226 86 2 559 90 0 0 chr1 50418771 50418849 -192245504 - L1MA4A LINE L1 -116 6187 6110 1929 50 0 0 chr1 50418849 50419071 -192245282 + AluY SINE Alu 3 224 -87 897 105 8 0 chr1 50419171 50419295 -192245058 + AluJo SINE Alu 165 289 -23 2188 141 28 11 chr1 50419320 50419675 -192244678 + L1PA16 LINE L1 5806 6166 0 2131 123 0 19 chr1 50419679 50419997 -192244356 + AluSq SINE Alu 1 312 -1 812 171 0 0 chr1 50420038 50420161 -192244192 - FRAM SINE Alu -51 125 3 26 0 0 0 chr1 50420206 50420232 -192244121 + AT_rich Low_complexity Low_complexity 1 26 0 222 271 68 59 chr1 50420258 50420376 -192243977 - MIR3 SINE MIR -40 168 50 193 250 19 19 chr1 50420418 50420470 -192243883 - MER5A DNA MER1_type -18 171 120 801 165 25 0 chr1 50420481 50420602 -192243751 - AluJb SINE Alu -187 125 2 803 174 93 0 chr1 50420658 50420819 -192243534 + AluSg/x SINE Alu 126 301 -9 359 253 111 2 chr1 50420819 50420949 -192243404 - MIR3 SINE MIR -53 155 28 6939 129 21 23 chr1 50421230 50421719 -192242634 - L1MA3 LINE L1 0 6305 5817 2505 61 0 0 chr1 50421719 50422016 -192242337 - AluY SINE Alu -13 298 2 6939 129 21 23 chr1 50422016 50423025 -192241328 - L1MA3 LINE L1 -488 5817 4808 2015 142 0 16 chr1 50423025 50423334 -192241019 - AluJo SINE Alu -8 304 1 6939 129 21 23 chr1 50423334 50423675 -192240678 - L1MA3 LINE L1 -1497 4808 4467 1470 119 9 0 chr1 50423675 50423885 -192240468 + AluSg/x SINE Alu 85 296 -14 6939 129 21 23 chr1 50423885 50424082 -192240271 - L1MA3 LINE L1 -1838 4467 4271 1157 179 0 5 chr1 50424264 50424454 -192239899 + AluSx SINE Alu 1 189 -123 2281 108 3 0 chr1 50425265 50425561 -192238792 + AluSx SINE Alu 1 297 -15 447 174 35 23 chr1 50426054 50426140 -192238213 + FLAM_A SINE Alu 38 124 -18 744 156 7 50 chr1 50426142 50426283 -192238070 + FLAM_C SINE Alu 3 137 -6 1570 205 24 3 chr1 50426283 50426576 -192237777 + AluJo SINE Alu 1 299 -13 1937 141 27 10 chr1 50426578 50426877 -192237476 + AluJb SINE Alu 1 304 -8 2386 185 40 13 chr1 50426886 50427658 -192236695 + L1MB4 LINE L1 4824 5621 -553 1399 137 19 44 chr1 50427650 50427920 -192236433 + L1MB2 LINE L1 5872 6134 -37 * 233 29 0 29 chr1 50427934 50427969 -192236384 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 817 154 0 0 chr1 50427975 50428092 -192236261 - FLAM_C SINE Alu -26 117 1 3031 156 48 7 chr1 50428132 50428501 -192235852 + L1MB4 LINE L1 5599 6000 -180 3695 146 42 10 chr1 50428501 50429104 -192235249 + LTR26E LTR ERV1 1 622 0 3031 156 48 7 chr1 50429104 50429292 -192235061 + L1MB4 LINE L1 6000 6179 -1 1306 278 70 58 chr1 50429304 50429424 -192234929 - L2 LINE L2 -1480 1834 1717 1930 139 0 11 chr1 50429424 50429750 -192234603 + AluJb SINE Alu 1 323 0 2372 110 0 0 chr1 50429750 50430060 -192234293 + AluSx SINE Alu 1 310 -2 1306 278 70 58 chr1 50430060 50430523 -192233830 - L2 LINE L2 -1596 1718 1242 587 194 120 0 chr1 50430525 50430633 -192233720 - FLAM_A SINE Alu -12 121 1 21 36 0 0 chr1 50430684 50430712 -192233641 + AT_rich Low_complexity Low_complexity 1 28 0 249 269 15 0 chr1 50430725 50430792 -192233561 + L1ME4a LINE L1 5949 6016 -105 346 285 46 26 chr1 50431630 50431781 -192232572 - MIR SINE MIR -1 261 108 2433 87 0 0 chr1 50431796 50432095 -192232258 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr1 50432165 50432193 -192232160 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr1 50432228 50432258 -192232095 + AT_rich Low_complexity Low_complexity 1 30 0 951 243 5 5 chr1 50433151 50433361 -192230992 - AluJo SINE Alu -95 217 8 309 80 0 20 chr1 50433373 50433423 -192230930 - FAM SINE Alu 0 179 131 5678 139 31 76 chr1 50433471 50433532 -192230821 - L1 LINE L1 -1092 5054 4992 330 160 0 0 chr1 50433532 50433604 -192230749 - Alu SINE Alu 0 306 235 5678 139 31 76 chr1 50433604 50433983 -192230370 - L1 LINE L1 -1154 4992 4597 2349 93 20 0 chr1 50433983 50434283 -192230070 - AluSx SINE Alu -6 306 1 2458 78 7 0 chr1 50434283 50434592 -192229761 - AluSp SINE Alu -2 311 1 5678 139 31 76 chr1 50434592 50434604 -192229749 - L1 LINE L1 -1548 4598 4587 2064 129 14 3 chr1 50434604 50434899 -192229454 - AluSx SINE Alu -14 298 1 5678 139 31 76 chr1 50434899 50435596 -192228757 - L1 LINE L1 -1559 4587 3906 2118 118 0 0 chr1 50436018 50436297 -192228056 + AluSx SINE Alu 1 279 -33 1888 71 41 38 chr1 50436330 50436596 -192227757 - L1PA13 LINE L1 0 6163 5897 297 295 101 27 chr1 50437121 50437270 -192227083 + MIR SINE MIR 98 257 -5 677 247 123 0 chr1 50437283 50437477 -192226876 - MIR SINE MIR 0 262 47 1494 204 0 11 chr1 50437477 50437752 -192226601 + AluJo SINE Alu 1 272 -40 677 247 123 0 chr1 50437752 50437768 -192226585 - MIR SINE MIR -215 47 34 1754 164 31 0 chr1 50437769 50438055 -192226298 - AluSx SINE Alu -17 295 1 2059 126 0 7 chr1 50438236 50438552 -192225801 + AluSx SINE Alu 1 314 0 1311 254 68 31 chr1 50438594 50438948 -192225405 + MLT1E LTR MaLR 198 564 -29 2211 108 3 22 chr1 50438966 50439281 -192225072 - AluSx SINE Alu -3 309 1 844 163 8 0 chr1 50439283 50439412 -192224941 - AluJo/FLAM SINE Alu -182 130 1 2241 101 7 16 chr1 50439419 50439725 -192224628 - AluSx SINE Alu -8 304 2 2103 117 3 0 chr1 50439733 50440040 -192224313 - AluSp SINE Alu 0 308 1 321 152 0 0 chr1 50440042 50440108 -192224245 + L1MB7 LINE L1 6114 6179 -5 1970 137 24 0 chr1 50440593 50440885 -192223468 - AluSx SINE Alu -13 299 1 324 143 39 52 chr1 50440934 50441011 -192223342 + AluJ/FLAM SINE Alu 23 98 -204 2129 121 6 19 chr1 50441087 50441400 -192222953 + AluSx SINE Alu 1 309 -3 454 122 10 112 chr1 50441644 50441701 -192222652 - MER58B DNA MER1_type -2079 341 296 1759 189 10 3 chr1 50441701 50441997 -192222356 + AluJo SINE Alu 1 298 -14 454 122 10 112 chr1 50441997 50442037 -192222316 - MER58B DNA MER1_type -2124 296 254 413 322 39 74 chr1 50442322 50442495 -192221858 + L1MC2 LINE L1 498 676 -5443 2330 213 31 105 chr1 50442495 50443241 -192221112 + LTR8 LTR ERV1 1 691 0 413 322 39 74 chr1 50443241 50443309 -192221044 + L1MC2 LINE L1 676 730 -5389 1650 187 3 30 chr1 50443309 50443614 -192220739 + AluJb SINE Alu 1 297 -15 413 322 39 74 chr1 50443614 50443654 -192220699 + L1MC2 LINE L1 730 770 -5349 365 314 128 13 chr1 50443747 50443973 -192220380 + L1M4 LINE L1 3375 3626 -2520 263 140 60 0 chr1 50443973 50444023 -192220330 - FLAM SINE Alu -2 131 79 1418 160 4 34 chr1 50444028 50444296 -192220057 + AluJo SINE Alu 47 306 -6 434 306 23 19 chr1 50444296 50444512 -192219841 + L1MC2 LINE L1 2979 3195 -2934 1600 197 10 3 chr1 50444740 50445035 -192219318 + AluJo SINE Alu 1 297 -15 3842 141 43 6 chr1 50445053 50445706 -192218647 - Tigger3b DNA MER2_type -541 690 14 493 197 0 26 chr1 50445710 50445818 -192218535 + L1MC2 LINE L1 4418 4524 -1605 189 0 0 0 chr1 50445818 50445839 -192218514 + (TG)n Simple_repeat Simple_repeat 2 22 0 1264 171 0 9 chr1 50445861 50446072 -192218281 + AluJo SINE Alu 104 312 0 2973 139 40 43 chr1 50446075 50446167 -192218186 + L1MC2 LINE L1 5287 5378 -949 2777 145 14 19 chr1 50446167 50446594 -192217759 - MSTB LTR MaLR 0 426 2 2973 139 40 43 chr1 50446594 50446747 -192217606 + L1MC2 LINE L1 5378 5530 -797 2122 134 0 0 chr1 50446747 50447052 -192217301 + AluSg1 SINE Alu 1 305 -4 2973 139 40 43 chr1 50447052 50447358 -192216995 + L1MC2 LINE L1 5530 5837 -490 207 0 0 0 chr1 50447361 50447384 -192216969 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 423 167 52 31 chr1 50447392 50447488 -192216865 - HsTC2 DNA Tc2 -343 1555 1282 382 347 53 11 chr1 50447736 50448021 -192216332 + L1M4 LINE L1 4768 5064 -1082 2143 105 0 0 chr1 50448034 50448310 -192216043 + AluSx SINE Alu 1 276 -36 279 148 374 17 chr1 50448335 50448450 -192215903 + HsTC2 DNA Tc2 1739 1894 -4 489 118 0 108 chr1 50448573 50448675 -192215678 - L1PA10 LINE L1 0 6168 6078 664 151 0 11 chr1 50448675 50448768 -192215585 - AluJ/FLAM SINE Alu -215 97 6 966 144 34 0 chr1 50448918 50449195 -192215158 + AluSg/x SINE Alu 142 423 0 298 245 82 40 chr1 50449333 50449569 -192214784 + L1ME LINE L1 5647 5889 -275 49 45 0 11 chr1 50449661 50449710 -192214643 + AT_rich Low_complexity Low_complexity 1 50 -37 1821 151 3 14 chr1 50449710 50449841 -192214512 + AluJb SINE Alu 4 135 -177 2365 85 3 3 chr1 50449841 50450146 -192214207 + AluSc SINE Alu 1 305 -4 1821 151 3 14 chr1 50450146 50450299 -192214054 + AluJb SINE Alu 135 285 -27 49 45 0 11 chr1 50450299 50450337 -192214016 + AT_rich Low_complexity Low_complexity 50 87 0 588 282 41 64 chr1 50450345 50450611 -192213742 + MIR SINE MIR 2 261 -1 278 128 0 0 chr1 50450779 50450818 -192213535 + tRNA-Ser-AGC tRNA tRNA 1 39 -46 2069 109 46 0 chr1 50450992 50451276 -192213077 - AluSg SINE Alu -13 297 1 1888 149 0 10 chr1 50451546 50451835 -192212518 + AluJb SINE Alu 13 298 -14 606 149 113 50 chr1 50452385 50452526 -192211827 + MER20 DNA MER1_type 70 219 0 408 341 95 0 chr1 50452983 50453162 -192211191 - MIR SINE MIR -26 236 41 243 259 0 74 chr1 50454282 50454363 -192209990 - L3 LINE CR1 -9 1568 1494 770 261 111 13 chr1 50454427 50454594 -192209759 - MIR SINE MIR -13 249 53 2164 124 0 3 chr1 50454594 50454885 -192209468 + AluSc SINE Alu 1 290 -19 770 261 111 13 chr1 50454885 50454943 -192209410 - MIR SINE MIR -209 53 2 1275 111 11 6 chr1 50455059 50455240 -192209113 - AluSg/x SINE Alu -20 292 111 1015 95 0 0 chr1 50455341 50455467 -192208886 - AluSc SINE Alu -179 130 5 639 147 95 17 chr1 50455558 50455674 -192208679 - FAM SINE Alu -20 165 41 2557 48 0 3 chr1 50455735 50456030 -192208323 + AluY SINE Alu 1 294 -17 2334 97 0 0 chr1 50456041 50456339 -192208014 + AluSq SINE Alu 3 300 -13 477 305 112 18 chr1 50456396 50456619 -192207734 - L2 LINE L2 -850 2464 2221 2190 74 13 55 chr1 50456619 50456930 -192207423 + AluY SINE Alu 2 299 -12 394 59 0 0 chr1 50457150 50457201 -192207152 - MADE1 DNA Mariner -29 51 1 358 253 74 32 chr1 50457309 50457404 -192206949 - L3 LINE CR1 -108 1469 1371 1016 179 0 6 chr1 50457561 50457729 -192206624 - FRAM SINE Alu -14 162 1 1754 126 85 11 chr1 50457829 50458100 -192206253 + AluSx SINE Alu 1 291 -21 818 155 0 0 chr1 50458108 50458224 -192206129 + FLAM_C SINE Alu 2 117 -26 21 36 0 0 chr1 50458224 50458252 -192206101 + AT_rich Low_complexity Low_complexity 1 28 0 1951 129 13 32 chr1 50458352 50458663 -192205690 - AluSg SINE Alu -5 305 1 295 100 0 0 chr1 50458919 50458969 -192205384 + AluSc SINE Alu 250 299 0 2357 88 19 10 chr1 50459094 50459402 -192204951 - AluSx SINE Alu -1 311 1 364 174 29 169 chr1 50459445 50459495 -192204858 + L1ME LINE L1 5671 5726 -395 2156 230 52 56 chr1 50459495 50460051 -192204302 + MLT2B3 LTR ERVL 1 554 0 364 174 29 169 chr1 50460051 50460117 -192204236 + L1ME LINE L1 5726 5758 -363 1731 164 4 4 chr1 50460117 50460391 -192203962 + AluSx SINE Alu 1 274 -38 364 174 29 169 chr1 50460391 50460445 -192203908 + L1ME LINE L1 5758 5818 -303 2141 116 0 0 chr1 50460458 50460751 -192203602 + AluY SINE Alu 1 293 -18 468 162 27 0 chr1 50460757 50460831 -192203522 + AluJ/FLAM SINE Alu 1 76 -236 441 264 0 0 chr1 50460828 50460919 -192203434 - AluJo SINE Alu -146 166 76 * 1430 110 0 86 chr1 50460919 50461164 -192203189 + AluSg/x SINE Alu 89 312 0 1866 111 4 0 chr1 50461291 50461544 -192202809 + AluSx SINE Alu 50 303 -9 182 354 217 18 chr1 50461969 50462305 -192202048 + L2 LINE L2 2804 3206 -107 334 304 0 0 chr1 50462482 50462561 -192201792 - L2 LINE L2 0 3272 3194 388 209 43 123 chr1 50462563 50462630 -192201723 + L1ME4a LINE L1 5950 6021 -100 2270 109 0 13 chr1 50462630 50462932 -192201421 - AluSx SINE Alu -14 298 1 388 209 43 123 chr1 50462932 50463051 -192201302 + L1ME4a LINE L1 6021 6121 0 1067 120 19 6 chr1 50463343 50463501 -192200852 - AluSp SINE Alu -17 296 137 24 32 0 0 chr1 50463507 50463538 -192200815 + AT_rich Low_complexity Low_complexity 1 31 0 2352 86 3 19 chr1 50463719 50464032 -192200321 - AluSx SINE Alu -4 308 1 2300 107 3 0 chr1 50464087 50464387 -192199966 + AluSg SINE Alu 1 301 -9 896 188 37 8 chr1 50464387 50464595 -192199758 + L1MC/D LINE L1 5627 5839 -339 277 198 48 63 chr1 50464593 50464618 -192199735 + L1MC4a LINE L1 5766 5790 -2018 * 2282 105 0 0 chr1 50464618 50464903 -192199450 + AluSx SINE Alu 5 289 -23 277 198 48 63 chr1 50464903 50464992 -192199361 + L1MC4a LINE L1 5790 5880 -1928 2521 52 0 0 chr1 50464992 50465283 -192199070 + AluY SINE Alu 1 291 -20 379 104 0 0 chr1 50465366 50465414 -192198939 + Tigger2 DNA MER2_type 1 48 -2670 665 200 0 0 chr1 50465414 50465519 -192198834 - FAM SINE Alu -61 124 20 4223 145 65 7 chr1 50465528 50466153 -192198200 + Tigger2 DNA MER2_type 45 721 -1997 1812 158 24 7 chr1 50466153 50466451 -192197902 + AluJo SINE Alu 1 303 -9 4223 145 65 7 chr1 50466451 50466563 -192197790 + Tigger2 DNA MER2_type 721 825 -1893 234 128 0 26 chr1 50466567 50466606 -192197747 + Tigger2 DNA MER2_type 2612 2649 -69 2323 110 0 0 chr1 50466606 50466905 -192197448 + AluSq SINE Alu 1 299 -14 2387 100 0 7 chr1 50466908 50467218 -192197135 + AluY SINE Alu 3 310 -1 2260 101 20 7 chr1 50467222 50467528 -192196825 + AluSq SINE Alu 1 310 -3 1610 191 7 17 chr1 50467629 50467923 -192196430 + AluJo SINE Alu 6 296 -16 316 209 30 0 chr1 50467923 50467990 -192196363 + Tigger2 DNA MER2_type 2640 2708 -10 2443 100 0 0 chr1 50468007 50468317 -192196036 - AluSq SINE Alu -3 310 1 2121 112 14 3 chr1 50468362 50468657 -192195696 + AluSx SINE Alu 1 298 -14 2602 53 0 0 chr1 50468658 50468947 -192195406 + AluY SINE Alu 1 292 -19 187 31 62 0 chr1 50468947 50468979 -192195374 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 2602 53 0 0 chr1 50468979 50468992 -192195361 + AluY SINE Alu 291 303 -8 2492 71 3 0 chr1 50469088 50469398 -192194955 - AluY SINE Alu 0 311 1 2270 118 0 6 chr1 50469419 50469732 -192194621 - AluSx SINE Alu -1 311 1 21 57 0 0 chr1 50469733 50469768 -192194585 + AT_rich Low_complexity Low_complexity 1 35 0 1535 96 10 10 chr1 50470379 50470588 -192193765 + AluSg/x SINE Alu 78 286 -26 330 87 0 0 chr1 50470789 50470835 -192193518 + (CA)n Simple_repeat Simple_repeat 1 46 0 2416 73 0 20 chr1 50470835 50471136 -192193217 - AluSp SINE Alu -18 295 1 1684 153 58 24 chr1 50471933 50472227 -192192126 - AluJb SINE Alu -8 304 1 208 317 195 0 chr1 50472590 50472713 -192191640 + MIR SINE MIR 110 256 -6 382 316 126 36 chr1 50472725 50472887 -192191466 + L2 LINE L2 1757 1903 -1411 1419 159 122 15 chr1 50472887 50473157 -192191196 + AluSg SINE Alu 1 299 -11 382 316 126 36 chr1 50473157 50473515 -192190838 + L2 LINE L2 1903 2337 -977 2256 108 7 0 chr1 50473515 50473821 -192190532 + AluSx SINE Alu 1 308 -4 382 316 126 36 chr1 50473821 50473878 -192190475 + L2 LINE L2 2337 2387 -927 247 231 0 0 chr1 50473882 50473934 -192190419 - 5S rRNA rRNA -69 52 1 219 302 121 50 chr1 50474039 50474221 -192190132 + L2 LINE L2 2593 2787 -527 1855 138 6 25 chr1 50475876 50476194 -192188159 - AluJb SINE Alu 0 312 1 2341 93 0 3 chr1 50476447 50476749 -192187604 + AluSc SINE Alu 1 301 -8 1737 179 16 13 chr1 50476752 50477059 -192187294 + AluJo SINE Alu 1 308 -4 673 180 8 8 chr1 50477372 50477500 -192186853 + FLAM_C SINE Alu 1 128 -5 1874 179 0 3 chr1 50477513 50477815 -192186538 + AluJb SINE Alu 1 301 -11 491 261 12 18 chr1 50477892 50478057 -192186296 - MER112 DNA MER1_type -96 164 1 1885 158 0 35 chr1 50478177 50478488 -192185865 + AluJb SINE Alu 1 300 -12 1755 85 58 0 chr1 50478681 50478904 -192185449 + AluSx SINE Alu 1 236 -76 2422 89 30 0 chr1 50479662 50479964 -192184389 - AluSx SINE Alu -1 311 1 2108 98 0 104 chr1 50480885 50481232 -192183121 + AluSq SINE Alu 1 311 -2 7255 76 15 34 chr1 50481526 50483193 -192181160 + SVA Other Other 322 1386 0 2537 62 3 3 chr1 50485371 50485676 -192178677 + AluSq SINE Alu 1 305 -8 369 214 31 31 chr1 50486372 50486470 -192177883 - LTR45 LTR ERV1 0 525 428 508 309 128 20 chr1 50486599 50487046 -192177307 + L2 LINE L2 2456 2950 -364 1493 171 114 14 chr1 50487049 50487330 -192177023 - AluJo SINE Alu -3 309 1 21 0 0 0 chr1 50487380 50487401 -192176952 + AT_rich Low_complexity Low_complexity 1 21 0 2389 88 10 10 chr1 50487485 50487793 -192176560 - AluSp SINE Alu -5 308 1 380 215 0 0 chr1 50487902 50487981 -192176372 + AluJ/FRAM SINE Alu 218 296 -6 1109 98 0 0 chr1 50487997 50488140 -192176213 - AluSg/x SINE Alu -8 302 160 2128 105 3 7 chr1 50488697 50488993 -192175360 + AluSq SINE Alu 1 295 -18 1105 162 22 70 chr1 50489079 50489308 -192175045 + AluJb SINE Alu 85 302 -10 1916 144 7 23 chr1 50489397 50489703 -192174650 + AluSx SINE Alu 1 301 -11 2241 104 0 3 chr1 50489733 50490045 -192174308 + AluSc SINE Alu 2 309 0 677 156 0 0 chr1 50490045 50490154 -192174199 - AluJo/FLAM SINE Alu -198 114 6 2441 87 0 0 chr1 50490187 50490487 -192173866 + AluSg SINE Alu 1 300 -10 2184 129 0 3 chr1 50491041 50491351 -192173002 - AluSx SINE Alu -2 310 2 1060 96 6 32 chr1 50491445 50491602 -192172751 + AluSx SINE Alu 1 153 -159 265 316 38 0 chr1 50491864 50491943 -192172410 - MIR SINE MIR -30 232 151 2378 64 7 10 chr1 50491945 50492243 -192172110 - AluSg1 SINE Alu -12 297 1 183 80 0 0 chr1 50492321 50492346 -192172007 + (T)n Simple_repeat Simple_repeat 1 25 0 300 208 69 92 chr1 50492459 50492589 -192171764 - MIR SINE MIR -83 179 53 2597 63 3 0 chr1 50492829 50493131 -192171222 + AluSp SINE Alu 1 303 -10 1309 97 0 0 chr1 50493134 50493310 -192171043 + AluSc SINE Alu 134 309 0 888 117 0 0 chr1 50493310 50493438 -192170915 + AluSg/x SINE Alu 131 258 -54 2202 110 7 0 chr1 50493459 50493749 -192170604 + AluSp SINE Alu 1 292 -21 2143 100 58 0 chr1 50493751 50494042 -192170311 + AluSg SINE Alu 1 308 -2 1727 209 0 0 chr1 50494048 50494330 -192170023 + AluJo SINE Alu 1 282 -30 2335 104 0 16 chr1 50494385 50494701 -192169652 + AluSx SINE Alu 1 311 -1 191 284 158 53 chr1 50494800 50494957 -192169396 - L2 LINE L2 -1386 1928 1789 2027 149 6 16 chr1 50494957 50495272 -192169081 + AluJb SINE Alu 1 312 0 191 284 158 53 chr1 50495272 50495417 -192168936 - L2 LINE L2 -1525 1789 1594 2127 134 0 3 chr1 50495417 50495709 -192168644 + AluSx SINE Alu 1 291 -21 2142 125 3 3 chr1 50497951 50498246 -192166107 - AluSg SINE Alu -15 295 1 2125 123 10 0 chr1 50498334 50498627 -192165726 + AluSg SINE Alu 1 296 -14 256 189 211 33 chr1 50498627 50498717 -192165636 + MIR SINE MIR 155 260 -2 516 208 9 0 chr1 50498949 50499055 -192165298 + FLAM_C SINE Alu 2 108 -35 190 198 12 111 chr1 50500309 50500390 -192163963 - L3 LINE CR1 -304 1273 1201 1382 109 63 32 chr1 50500601 50500822 -192163531 - AluSg/x SINE Alu 0 312 85 705 45 0 0 chr1 50500822 50500911 -192163442 - AluY SINE Alu -62 249 161 1213 131 6 0 chr1 50500911 50501079 -192163274 + AluSg/x SINE Alu 123 291 -19 635 129 0 0 chr1 50501598 50501699 -192162654 + AluSg/x SINE Alu 205 305 -4 7421 84 22 7 chr1 50502045 50503000 -192161353 + LTR5 LTR ERVK 1 969 0 2441 89 0 0 chr1 50503852 50504156 -192160197 + AluY SINE Alu 1 304 -7 761 151 16 0 chr1 50504876 50505002 -192159351 + FLAM_A SINE Alu 1 128 -5 243 103 0 0 chr1 50505021 50505060 -192159293 + (GA)n Simple_repeat Simple_repeat 2 40 0 1958 127 3 39 chr1 50505266 50505573 -192158780 + AluSq SINE Alu 6 301 -12 2499 72 0 3 chr1 50506034 50506338 -192158015 + AluY SINE Alu 1 303 -8 1868 153 13 16 chr1 50506582 50506714 -192157639 + AluJo SINE Alu 1 132 -180 2528 78 0 19 chr1 50506714 50507033 -192157320 + AluSp SINE Alu 1 313 0 1868 153 13 16 chr1 50507033 50507207 -192157146 + AluJo SINE Alu 132 306 -6 201 94 0 0 chr1 50508113 50508145 -192156208 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2037 112 4 7 chr1 50508148 50508426 -192155927 - AluSp SINE Alu -32 281 5 2264 98 0 7 chr1 50508566 50508862 -192155491 + AluSg SINE Alu 9 302 -8 2506 67 0 3 chr1 50509077 50509390 -192154963 + AluSx SINE Alu 1 312 0 1092 128 0 6 chr1 50509390 50509546 -192154807 + AluSg/x SINE Alu 134 288 -24 24 0 0 0 chr1 50510627 50510651 -192153702 + GC_rich Low_complexity Low_complexity 1 24 0 1112 165 89 164 chr1 50511037 50511388 -192152965 + LTR34 LTR ERV1 1 376 -323 2083 109 3 17 chr1 50511388 50511681 -192152672 - AluSx SINE Alu -23 289 1 1112 165 89 164 chr1 50511681 50511855 -192152498 + LTR34 LTR ERV1 376 470 -229 1840 85 24 4 chr1 50511855 50512103 -192152250 + AluSc SINE Alu 38 290 -19 1112 165 89 164 chr1 50512103 50512236 -192152117 + LTR34 LTR ERV1 470 611 -88 222 231 0 0 chr1 50512520 50512572 -192151781 + A-rich Low_complexity Low_complexity 1 52 0 310 267 158 54 chr1 50512572 50512625 -192151728 + MIR SINE MIR 19 65 -197 2283 104 16 0 chr1 50512625 50512933 -192151420 + AluSp SINE Alu 1 313 0 310 267 158 54 chr1 50512933 50513100 -192151253 + MIR SINE MIR 65 262 0 2239 105 0 3 chr1 50513169 50513463 -192150890 - AluSq SINE Alu -20 293 1 210 390 44 15 chr1 50513640 50513776 -192150577 + L2 LINE L2 3129 3268 -4 2372 98 0 0 chr1 50514257 50514553 -192149800 + AluSg SINE Alu 1 296 -14 2377 110 0 0 chr1 50514553 50514862 -192149491 + AluSg SINE Alu 1 310 0 678 198 0 0 chr1 50514899 50515025 -192149328 + FLAM_A SINE Alu 12 137 -5 381 347 122 9 chr1 50515380 50515717 -192148636 - L2 LINE L2 -568 2746 2372 2347 100 0 0 chr1 50515736 50516036 -192148317 + AluSq SINE Alu 1 300 -13 2166 105 7 39 chr1 50516037 50516342 -192148011 + AluSx SINE Alu 2 296 -16 1792 153 3 59 chr1 50516622 50516739 -192147614 + AluJb SINE Alu 2 124 -188 8726 45 0 0 chr1 50516739 50517705 -192146648 + LTR5 LTR ERVK 4 969 0 1792 153 3 59 chr1 50517705 50517908 -192146445 + AluJb SINE Alu 124 304 -8 2025 166 3 0 chr1 50517937 50518244 -192146109 - AluSx SINE Alu -2 310 3 2386 82 10 3 chr1 50518517 50518822 -192145531 + AluSp SINE Alu 1 307 -6 1727 187 3 35 chr1 50518834 50519149 -192145204 + AluJb SINE Alu 1 305 -7 2047 104 66 7 chr1 50519166 50519454 -192144899 + AluSx SINE Alu 1 305 -7 2427 83 0 7 chr1 50519678 50519980 -192144373 - AluSx SINE Alu -12 300 1 2332 103 0 0 chr1 50520272 50520573 -192143780 + AluSg SINE Alu 1 301 -9 195 186 0 0 chr1 50520720 50520763 -192143590 + GA-rich Low_complexity Low_complexity 3 45 0 2345 97 3 13 chr1 50520864 50521173 -192143180 + AluSx SINE Alu 2 307 -5 1164 152 0 0 chr1 50521262 50521433 -192142920 - FRAM SINE Alu -11 165 1 1983 114 53 4 chr1 50521443 50521724 -192142629 - AluSq SINE Alu -18 295 1 573 197 0 8 chr1 50521731 50521743 -192142610 - FLAM_C SINE Alu -169 143 132 2533 67 0 0 chr1 50521743 50522040 -192142313 + AluY SINE Alu 1 297 -14 573 197 0 8 chr1 50522040 50522149 -192142204 - FLAM_C SINE Alu -180 132 23 1663 113 0 0 chr1 50522214 50522436 -192141917 - AluSc SINE Alu -74 235 14 262 116 0 0 chr1 50522491 50522534 -192141819 + FLAM SINE Alu 85 127 -6 27 49 0 0 chr1 50522534 50522575 -192141778 + AT_rich Low_complexity Low_complexity 1 41 0 894 155 0 0 chr1 50522590 50522719 -192141634 - FLAM_C SINE Alu -4 129 1 1988 132 11 0 chr1 50522738 50523038 -192141315 - AluSx SINE Alu 0 303 1 2005 114 36 4 chr1 50523038 50523319 -192141034 - AluSx SINE Alu -22 290 1 806 169 6 101 chr1 50523319 50523347 -192141006 - AluJo/FRAM SINE Alu -5 297 268 1742 187 7 3 chr1 50523347 50523646 -192140707 + AluJb SINE Alu 1 300 -12 806 169 6 101 chr1 50523646 50523795 -192140558 - AluJo/FRAM SINE Alu -34 268 137 22 0 0 0 chr1 50523831 50523853 -192140500 + AT_rich Low_complexity Low_complexity 1 22 0 2387 102 0 0 chr1 50523870 50524165 -192140188 - AluSc SINE Alu -14 295 1 725 171 9 10 chr1 50524605 50524748 -192139605 - MER20 DNA MER1_type -5 214 69 217 263 62 0 chr1 50525555 50525635 -192138718 - L3 LINE CR1 -338 1239 1155 340 313 87 0 chr1 50526112 50526227 -192138126 + L2 LINE L2 3148 3272 0 2270 108 3 3 chr1 50526301 50526608 -192137745 - AluSc SINE Alu -2 307 1 2300 121 0 0 chr1 50526608 50526905 -192137448 - AluSq SINE Alu -16 297 1 1985 145 0 26 chr1 50526906 50527209 -192137144 - AluSx SINE Alu -17 295 1 2375 43 4 4 chr1 50527363 50527685 -192136668 + AluY SINE Alu 1 322 0 21 0 0 0 chr1 50527780 50527801 -192136552 + AT_rich Low_complexity Low_complexity 1 21 0 1270 129 0 0 chr1 50528010 50528181 -192136172 - AluSg/x SINE Alu -8 304 134 2419 88 0 0 chr1 50528181 50528476 -192135877 - AluY SINE Alu -16 295 1 2367 92 3 0 chr1 50528486 50528780 -192135573 - AluSp SINE Alu -18 295 1 1844 113 98 4 chr1 50528791 50529066 -192135287 - AluY SINE Alu -10 301 1 1824 157 0 60 chr1 50529698 50530084 -192134269 + AluJb SINE Alu 1 366 0 2202 110 0 71 chr1 50530084 50530421 -192133932 + AluSp SINE Alu 1 313 0 1328 204 0 26 chr1 50530464 50530704 -192133649 + AluJo SINE Alu 45 279 -33 1936 132 0 78 chr1 50530704 50531037 -192133316 + AluSg SINE Alu 1 307 -3 1328 204 0 26 chr1 50531037 50531060 -192133293 + AluJo SINE Alu 279 301 -11 349 246 65 111 chr1 50531557 50531756 -192132597 - L1ME4a LINE L1 -221 5900 5711 877 119 0 0 chr1 50531767 50531885 -192132468 - FLAM_C SINE Alu -25 118 1 304 227 91 18 chr1 50531909 50532019 -192132334 - L1ME4a LINE L1 -435 5686 5569 1274 147 156 0 chr1 50532086 50532317 -192132036 - AluJo SINE Alu -2 310 44 204 160 20 80 chr1 50532473 50532523 -192131830 + L2 LINE L2 3267 3313 0 201 349 0 0 chr1 50532873 50532939 -192131414 + (TG)n Simple_repeat Simple_repeat 1 66 0 219 277 138 0 chr1 50533109 50533203 -192131150 - MIR SINE MIR 0 262 156 1799 167 3 11 chr1 50533213 50533500 -192130853 + AluJb SINE Alu 11 295 -17 1014 139 81 17 chr1 50534426 50534598 -192129755 - AluSx SINE Alu -12 300 118 400 144 146 7 chr1 50534875 50534975 -192129378 - THE1C LTR MaLR -73 293 187 1009 110 7 0 chr1 50534975 50535111 -192129242 - AluSx SINE Alu -175 137 1 203 317 0 0 chr1 50535128 50535188 -192129165 + L2 LINE L2 3211 3270 -2 2246 131 0 6 chr1 50535219 50535533 -192128820 - AluSx SINE Alu 0 312 1 239 284 158 53 chr1 50535533 50535678 -192128675 + L2 LINE L2 1594 1722 -1592 2020 149 6 16 chr1 50535678 50535993 -192128360 - AluJb SINE Alu 0 312 1 239 284 158 53 chr1 50535993 50536150 -192128203 + L2 LINE L2 1722 1928 -1386 2328 104 0 16 chr1 50536249 50536565 -192127788 - AluSx SINE Alu -1 311 1 1723 209 0 0 chr1 50536620 50536902 -192127451 - AluJo SINE Alu -30 282 1 2131 100 58 0 chr1 50536908 50537199 -192127154 - AluSg SINE Alu -2 308 1 2193 110 7 0 chr1 50537201 50537491 -192126862 - AluSp SINE Alu -21 292 1 947 117 0 0 chr1 50537512 50537640 -192126713 - AluSg/x SINE Alu -54 258 131 1306 97 0 0 chr1 50537640 50537816 -192126537 - AluSc SINE Alu 0 309 134 2586 63 3 0 chr1 50537819 50538121 -192126232 - AluSp SINE Alu -10 303 1 337 210 101 87 chr1 50538353 50538491 -192125862 + MIR SINE MIR 40 179 -83 183 80 0 0 chr1 50538604 50538629 -192125724 + (A)n Simple_repeat Simple_repeat 1 25 0 2388 60 7 10 chr1 50538707 50539005 -192125348 + AluSg1 SINE Alu 1 297 -12 263 292 0 0 chr1 50539021 50539086 -192125267 + MIR SINE MIR 168 232 -30 213 321 25 12 chr1 50539195 50539276 -192125077 + MIR3 SINE MIR 110 191 -17 343 289 111 28 chr1 50539872 50540086 -192124267 + MIR3 SINE MIR 11 256 -6 378 0 0 0 chr1 50540615 50540657 -192123696 + (TATG)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr1 50540800 50540820 -192123533 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 785 176 95 179 chr1 50540844 50541140 -192123213 - AluJo SINE Alu -39 273 3 2337 97 0 10 chr1 50541478 50541777 -192122576 + AluSx SINE Alu 1 296 -16 2367 90 0 0 chr1 50541777 50542066 -192122287 + AluSc SINE Alu 1 289 -20 2520 57 0 7 chr1 50542347 50542644 -192121709 + AluY SINE Alu 1 295 -16 1633 147 102 4 chr1 50542655 50542780 -192121573 + AluJo SINE Alu 1 112 -200 1779 188 0 3 chr1 50542780 50543084 -192121269 + AluJb SINE Alu 1 303 -9 1633 147 102 4 chr1 50543084 50543224 -192121129 + AluJo SINE Alu 112 292 -20 1793 190 0 3 chr1 50543326 50543621 -192120732 - AluJb SINE Alu -12 300 7 1056 171 148 42 chr1 50543734 50543841 -192120512 - MER2 DNA MER2_type -1 344 250 2474 71 3 0 chr1 50543841 50544136 -192120217 + AluSp SINE Alu 1 296 -17 1056 171 148 42 chr1 50544136 50544338 -192120015 - MER2 DNA MER2_type -95 250 2 208 324 14 14 chr1 50544400 50544474 -192119879 - MIR SINE MIR -187 75 2 330 234 75 0 chr1 50544485 50544579 -192119774 - L2 LINE L2 -954 2360 2260 2187 107 10 3 chr1 50544937 50545228 -192119125 + AluSx SINE Alu 2 294 -18 2401 91 7 0 chr1 50545232 50545539 -192118814 + AluSq SINE Alu 1 309 -4 2363 117 0 0 chr1 50545543 50545851 -192118502 + AluSq SINE Alu 1 308 -5 2231 104 3 23 chr1 50546543 50546851 -192117502 - AluSx SINE Alu -10 302 1 1966 140 16 16 chr1 50546856 50547031 -192117322 - AluSx SINE Alu -4 308 131 2394 93 0 3 chr1 50547031 50547333 -192117020 - AluSg SINE Alu -9 301 1 1966 140 16 16 chr1 50547333 50547465 -192116888 - AluSx SINE Alu -180 132 1 219 362 0 53 chr1 50547631 50547725 -192116628 + L2 LINE L2 2961 3049 -223 2471 79 0 16 chr1 50548267 50548582 -192115771 - AluSg SINE Alu 0 310 1 243 255 31 102 chr1 50548582 50548627 -192115726 + MIR3 SINE MIR 64 100 -108 2065 122 10 3 chr1 50548627 50548921 -192115432 - AluSx SINE Alu -16 296 1 243 255 31 102 chr1 50548921 50548973 -192115380 + MIR3 SINE MIR 100 154 -54 1471 199 11 0 chr1 50548976 50549252 -192115101 + AluJo SINE Alu 11 289 -23 2473 82 0 0 chr1 50549358 50549662 -192114691 - AluY SINE Alu -7 304 1 2171 124 0 0 chr1 50550056 50550338 -192114015 - AluSx SINE Alu -29 283 2 192 258 227 61 chr1 50550763 50550926 -192113427 + L2 LINE L2 3077 3266 -6 1223 135 0 0 chr1 50550966 50551136 -192113217 - AluJb SINE Alu -1 311 142 2324 105 0 0 chr1 50551149 50551445 -192112908 - AluSx SINE Alu -16 296 1 820 133 8 8 chr1 50551473 50551593 -192112760 + FLAM_C SINE Alu 1 120 -23 917 125 37 0 chr1 50551747 50551883 -192112470 + FRAM SINE Alu 18 158 -18 2271 122 0 10 chr1 50551887 50552199 -192112154 + AluSg SINE Alu 1 309 -1 2408 97 3 0 chr1 50552275 50552583 -192111770 + AluSp SINE Alu 1 309 -4 30 27 0 0 chr1 50553536 50553573 -192110780 + AT_rich Low_complexity Low_complexity 1 37 0 2435 76 0 0 chr1 50553573 50553889 -192110464 - AluY SINE Alu 0 316 1 2552 78 3 0 chr1 50553890 50554197 -192110156 - AluSp SINE Alu -5 308 1 21 0 0 0 chr1 50554197 50554218 -192110135 + AT_rich Low_complexity Low_complexity 1 21 0 2196 130 0 9 chr1 50554227 50554542 -192109811 - AluSx SINE Alu 0 312 1 800 169 0 22 chr1 50554546 50554682 -192109671 - FLAM_C SINE Alu 0 133 1 2366 74 3 62 chr1 50554869 50555193 -192109160 - AluSq SINE Alu -6 307 3 2589 63 0 0 chr1 50556313 50556615 -192107738 + AluY SINE Alu 1 302 -9 387 241 23 0 chr1 50558196 50558283 -192106070 + MIR SINE MIR 56 144 -118 206 237 0 0 chr1 50558281 50558319 -192106034 + L2 LINE L2 3217 3254 -18 * 422 337 180 32 chr1 50559479 50559856 -192104497 - L2 LINE L2 -5 3267 2835 583 164 30 112 chr1 50559985 50560024 -192104329 - FLAM_C SINE Alu -188 124 83 2121 107 0 3 chr1 50560024 50560313 -192104040 - AluSx SINE Alu -11 301 14 583 164 30 112 chr1 50560313 50560407 -192103946 - FLAM_C SINE Alu -229 83 2 5705 123 18 1 chr1 50560408 50561776 -192102577 - L1M1 LINE L1 -567 5737 4349 1384 143 50 15 chr1 50561915 50562208 -192102145 - MER61B LTR ERV1 -29 396 1 6984 150 72 72 chr1 50562208 50563653 -192100700 - MER61B-int LTR ERV1 0 5217 3775 2232 83 22 0 chr1 50563653 50563950 -192100403 + AluSc SINE Alu 1 303 0 6984 150 72 72 chr1 50563950 50564343 -192100010 - MER61B-int LTR ERV1 -1442 3775 3339 2202 108 0 26 chr1 50564343 50564648 -192099705 + AluY SINE Alu 1 297 -14 6984 150 72 72 chr1 50564648 50564907 -192099446 - MER61B-int LTR ERV1 -1878 3339 3082 2138 89 0 0 chr1 50564907 50565165 -192099188 + AluSq SINE Alu 1 258 -55 7825 89 8 20 chr1 50565165 50566249 -192098104 + MER11C LTR ERVK 1 1071 0 227 163 0 20 chr1 50566249 50566298 -192098055 + AluSq SINE Alu 251 298 -2 6178 65 35 48 chr1 50566311 50566379 -192097974 - MER61-int LTR ERV1 -2121 3096 3029 2540 7 0 0 chr1 50566379 50566695 -192097658 + AluYa5 SINE Alu 1 316 0 6178 65 35 48 chr1 50566695 50566734 -192097619 - MER61-int LTR ERV1 -2188 3029 2991 2232 67 0 3 chr1 50566734 50567018 -192097335 + AluY SINE Alu 16 298 -13 6178 65 35 48 chr1 50567018 50567856 -192096497 - MER61-int LTR ERV1 -2226 2991 2162 2338 83 0 13 chr1 50567959 50568271 -192096082 - AluSx SINE Alu -4 308 1 2002 113 0 3 chr1 50568276 50568584 -192095769 - AluSc SINE Alu 0 307 1 2215 76 10 3 chr1 50568589 50568893 -192095460 - AluSx SINE Alu -6 306 1 1896 140 7 0 chr1 50568905 50569198 -192095155 - AluSx SINE Alu -17 295 1 24 0 0 0 chr1 50569198 50569222 -192095131 + AT_rich Low_complexity Low_complexity 1 24 0 300 291 146 0 chr1 50569222 50569325 -192095028 + L2 LINE L2 3155 3272 0 273 306 106 61 chr1 50569440 50569620 -192094733 - MIR SINE MIR -12 250 63 1686 66 0 0 chr1 50569949 50570161 -192094192 - AluSg/x SINE Alu -16 294 83 2179 67 3 13 chr1 50570173 50570473 -192093880 - AluSg SINE Alu -13 297 1 1340 164 91 7 chr1 50573092 50573367 -192090986 - AluJo SINE Alu -14 298 1 322 179 60 0 chr1 50573596 50573663 -192090690 - AluJb SINE Alu -20 282 212 676 0 24 0 chr1 50573668 50573752 -192090601 + (TG)n Simple_repeat Simple_repeat 2 87 0 1408 162 0 11 chr1 50573752 50574017 -192090336 - AluJb SINE Alu -50 262 1 679 168 0 46 chr1 50574294 50574425 -192089928 - FLAM_A SINE Alu -8 125 1 1450 115 177 4 chr1 50574614 50574874 -192089479 - AluSx SINE Alu -7 305 1 973 107 190 0 chr1 50574874 50575090 -192089263 - Tigger2 DNA MER2_type -2356 362 106 243 0 0 0 chr1 50575090 50575117 -192089236 + (TA)n Simple_repeat Simple_repeat 1 27 0 754 189 0 0 chr1 50575122 50575254 -192089099 - AluSg/x SINE Alu -23 289 158 708 108 285 8 chr1 50575256 50575386 -192088967 + AluSg/x SINE Alu 124 289 -20 943 171 6 0 chr1 50575387 50575551 -192088802 + AluSx SINE Alu 1 165 -147 1906 130 0 0 chr1 50575554 50575830 -192088523 - AluSx SINE Alu -34 278 3 535 182 55 27 chr1 50575854 50575964 -192088389 - FLAM_C SINE Alu -17 126 14 1963 54 79 22 chr1 50576086 50576364 -192087989 + AluY SINE Alu 1 294 -17 243 0 0 0 chr1 50576386 50576413 -192087940 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1539 195 13 3 chr1 50576555 50576853 -192087500 - AluJo SINE Alu -11 301 1 1937 118 7 3 chr1 50577046 50577342 -192087011 + AluSx SINE Alu 1 297 -15 703 247 50 11 chr1 50577407 50577589 -192086764 + MER5A DNA MER1_type 1 189 0 2048 64 13 32 chr1 50577691 50578005 -192086348 + AluY SINE Alu 1 308 -3 244 26 0 0 chr1 50578112 50578151 -192086202 - Alu SINE Alu 0 301 263 252 231 44 22 chr1 50578164 50578255 -192086098 + MER5C DNA MER1_type 232 324 0 1503 201 7 10 chr1 50578770 50579079 -192085274 - AluJo SINE Alu -1 311 4 1458 184 16 26 chr1 50579248 50579419 -192084934 - AluJo SINE Alu -11 301 133 1986 106 10 7 chr1 50579419 50579711 -192084642 - AluSq SINE Alu -16 297 5 1458 184 16 26 chr1 50579711 50579843 -192084510 - AluJo SINE Alu -179 133 1 2286 93 0 0 chr1 50579944 50580245 -192084108 - AluSx SINE Alu -11 301 1 2992 116 52 24 chr1 50580322 50580682 -192083671 + MER75 DNA T2_type 1 380 -134 2172 102 3 10 chr1 50580682 50580986 -192083367 + AluSx SINE Alu 1 302 -10 2992 116 52 24 chr1 50580986 50581125 -192083228 + MER75 DNA T2_type 380 514 0 1499 166 0 72 chr1 50581153 50581484 -192082869 + AluJo SINE Alu 1 307 -5 1940 95 65 10 chr1 50581487 50581781 -192082572 + AluSq SINE Alu 1 310 -3 1333 175 52 16 chr1 50581974 50582225 -192082128 - AluJb SINE Alu -51 261 2 463 257 144 113 chr1 50582276 50582422 -192081931 + L2 LINE L2 1169 1309 -2005 901 212 178 19 chr1 50582422 50582560 -192081793 - AluJo SINE Alu -1 301 186 531 0 0 0 chr1 50582560 50582619 -192081734 + (TG)n Simple_repeat Simple_repeat 2 60 0 901 212 178 19 chr1 50582619 50582739 -192081614 - AluJo SINE Alu -116 186 2 463 257 144 113 chr1 50582739 50582946 -192081407 + L2 LINE L2 1309 1533 -1781 3175 192 173 88 chr1 50582947 50583652 -192080701 + Charlie1a DNA MER1_type 1 644 -2117 1812 133 85 3 chr1 50583652 50583982 -192080371 - L1MB2 LINE L1 -2 6169 5813 3175 192 173 88 chr1 50583982 50584141 -192080212 + Charlie1a DNA MER1_type 644 788 -1973 1890 133 30 3 chr1 50584141 50584442 -192079911 + AluSg SINE Alu 1 309 -1 3175 192 173 88 chr1 50584442 50584458 -192079895 + Charlie1a DNA MER1_type 788 801 -1960 1968 96 11 0 chr1 50584458 50584730 -192079623 + AluSx SINE Alu 1 275 -37 3175 192 173 88 chr1 50584730 50585170 -192079183 + Charlie1a DNA MER1_type 801 1436 -19 1026 315 143 44 chr1 50585175 50585603 -192078750 + L2 LINE L2 1521 1905 -1409 1531 101 5 0 chr1 50585603 50585811 -192078542 - AluSg/x SINE Alu -14 298 90 1026 315 143 44 chr1 50585811 50586208 -192078145 + L2 LINE L2 1905 2428 -886 212 152 63 89 chr1 50586256 50586335 -192078018 + MIR SINE MIR 120 196 -66 209 225 216 63 chr1 50586368 50586479 -192077874 + L2 LINE L2 2430 2557 -757 634 157 20 0 chr1 50586549 50586679 -192077674 - FRAM SINE Alu 0 174 43 1374 179 84 11 chr1 50586996 50587270 -192077083 - AluJo SINE Alu -18 294 1 2213 99 0 6 chr1 50587279 50587591 -192076762 - AluSg SINE Alu 0 310 1 329 285 108 32 chr1 50587655 50587813 -192076540 + L2 LINE L2 2807 2976 -338 198 0 0 0 chr1 50587817 50587839 -192076514 + (T)n Simple_repeat Simple_repeat 1 22 0 189 236 101 56 chr1 50587881 50587970 -192076383 + L2 LINE L2 3179 3271 -1 3497 201 65 19 chr1 50588084 50589424 -192074929 - L1ME1 LINE L1 -12 6154 4759 2415 53 10 0 chr1 50589609 50589911 -192074442 - AluY SINE Alu -2 309 5 1467 121 103 40 chr1 50590608 50590880 -192073473 - AluJb SINE Alu -19 293 5 267 329 41 0 chr1 50590886 50590959 -192073394 - MER81 DNA DNA -31 83 8 2189 89 3 3 chr1 50591559 50591862 -192072491 - AluSp SINE Alu -10 303 1 783 270 36 36 chr1 50592270 50592522 -192071831 - MIR SINE MIR -2 260 9 2246 89 3 0 chr1 50593422 50593715 -192070638 - AluSx SINE Alu -18 294 1 2116 116 3 0 chr1 50593728 50594029 -192070324 - AluSp SINE Alu -11 302 1 326 271 131 0 chr1 50597863 50597985 -192066368 - MIR SINE MIR -41 221 84 1928 131 3 10 chr1 50598101 50598398 -192065955 + AluSg SINE Alu 1 295 -15 292 203 198 8 chr1 50598495 50598633 -192065720 - MIR SINE MIR -40 168 1 704 222 13 20 chr1 50598785 50598938 -192065415 - AluJo/FRAM SINE Alu -16 296 145 1649 134 8 8 chr1 50598939 50599200 -192065153 - AluSx SINE Alu -51 261 1 2289 94 0 0 chr1 50599639 50599947 -192064406 - AluY SINE Alu -2 309 2 2209 69 0 44 chr1 50600038 50600355 -192063998 - AluY SINE Alu -8 303 1 838 181 18 41 chr1 50601465 50601636 -192062717 - AluJb SINE Alu -15 297 131 1159 216 24 50 chr1 50601674 50601971 -192062382 - AluJo SINE Alu -13 289 1 2303 86 0 0 chr1 50602729 50603031 -192061322 - AluSg SINE Alu -8 302 1 449 195 195 16 chr1 50603796 50603919 -192060434 + MIR SINE MIR 7 151 -111 1027 158 60 6 chr1 50603919 50604102 -192060251 - MER46A DNA MER2_type 0 236 44 757 176 0 0 chr1 50604635 50604754 -192059599 + FLAM_C SINE Alu 13 131 -12 2110 109 0 0 chr1 50605043 50605337 -192059016 - AluSg SINE Alu -16 294 1 1635 136 70 11 chr1 50607137 50607410 -192056943 - AluSq SINE Alu -24 289 1 346 236 319 16 chr1 50608665 50608856 -192055497 + MIR SINE MIR 12 260 -2 2257 70 7 13 chr1 50612915 50613216 -192051137 - AluY SINE Alu -12 299 1 2156 75 7 39 chr1 50613227 50613388 -192050965 - AluY SINE Alu -13 298 150 2255 80 0 7 chr1 50613388 50613690 -192050663 - AluY SINE Alu -11 300 1 2156 75 7 39 chr1 50613690 50613836 -192050517 - AluY SINE Alu -161 150 1 364 214 58 10 chr1 50614063 50614166 -192050187 + Tigger5 DNA MER2_type 10 117 -2206 767 175 0 16 chr1 50614226 50614352 -192050001 - FRAM SINE Alu -46 130 7 1147 169 12 58 chr1 50614364 50614525 -192049828 - AluSg/x SINE Alu -14 296 148 2236 76 10 7 chr1 50614525 50614829 -192049524 - AluY SINE Alu -6 305 1 1147 169 12 58 chr1 50614829 50614909 -192049444 - AluSg/x SINE Alu -162 148 66 239 241 0 35 chr1 50614957 50615015 -192049338 + L2 LINE L2 3201 3256 -16 332 281 44 37 chr1 50815021 50815102 -191849251 - L2 LINE L2 -1 3271 3187 2259 101 3 0 chr1 50815102 50815408 -191848945 + AluSp SINE Alu 1 307 -6 332 281 44 37 chr1 50815408 50815461 -191848892 - L2 LINE L2 -85 3187 3136 22 0 0 0 chr1 50815695 50815717 -191848636 + AT_rich Low_complexity Low_complexity 1 22 0 3728 21 0 0 chr1 50815877 50816299 -191848054 - L1PA3 LINE L1 0 6155 5734 25015 24 8 2 chr1 50816299 50819602 -191844751 + L1PA3 LINE L1 2410 5724 -431 613 308 117 34 chr1 50819603 50820081 -191844272 + L2 LINE L2 1799 2316 -998 495 254 30 15 chr1 50820802 50820936 -191843417 + L2 LINE L2 2599 2734 -580 409 257 53 136 chr1 50821710 50822049 -191842304 - L2 LINE L2 -1 3271 2961 1139 247 35 32 chr1 50822236 50822605 -191841748 - L1ME1 LINE L1 -6 6160 5791 279 321 75 22 chr1 50822993 50823127 -191841226 + MIR3 SINE MIR 25 165 -43 196 286 0 0 chr1 50823120 50823169 -191841184 + L2 LINE L2 3210 3258 -14 * 223 211 0 0 chr1 50823200 50823238 -191841115 + L2 LINE L2 3221 3258 -14 295 89 22 0 chr1 50826408 50826453 -191837900 + MADE1 DNA Mariner 1 46 -34 2419 104 28 47 chr1 50826544 50826739 -191837614 - THE1B LTR MaLR -7 357 171 2197 112 0 0 chr1 50826739 50827042 -191837311 + AluSx SINE Alu 1 303 -9 2419 104 28 47 chr1 50827042 50827210 -191837143 - THE1B LTR MaLR -193 171 1 190 274 253 0 chr1 50827823 50827918 -191836435 - L2 LINE L2 -17 3255 3137 386 297 75 70 chr1 50827947 50828276 -191836077 - L2 LINE L2 -275 2997 2666 361 326 36 45 chr1 50828494 50828715 -191835638 + MIR SINE MIR 14 232 -30 305 280 152 24 chr1 50828734 50828945 -191835408 - L2 LINE L2 -919 2395 2158 640 118 137 0 chr1 50829614 50829716 -191834637 + FLAM_C SINE Alu 3 118 -15 342 0 0 0 chr1 50831294 50831332 -191833021 + (A)n Simple_repeat Simple_repeat 1 38 0 959 191 79 23 chr1 50831674 50831889 -191832464 + MIR SINE MIR 34 260 -2 1786 163 7 0 chr1 50832577 50832877 -191831476 + AluJo SINE Alu 1 302 -10 1913 142 20 0 chr1 50833020 50833323 -191831030 - AluSx SINE Alu -3 309 1 1132 161 93 45 chr1 50833323 50833614 -191830739 + MER41B LTR ERV1 331 635 0 2028 111 10 13 chr1 50834295 50834601 -191829752 - AluSq SINE Alu -8 305 1 531 217 9 17 chr1 50834953 50835068 -191829285 + FLAM_C SINE Alu 2 115 -18 498 221 38 30 chr1 50835429 50835560 -191828793 - FLAM_C SINE Alu -10 133 2 1810 159 0 7 chr1 50835851 50836159 -191828194 + AluSx SINE Alu 1 306 -6 2027 91 42 0 chr1 50836497 50836784 -191827569 + AluSq SINE Alu 1 299 -14 1480 190 3 11 chr1 50837157 50837464 -191826889 + AluJb SINE Alu 1 305 0 2137 99 0 0 chr1 50837800 50838109 -191826244 + AluSq SINE Alu 1 309 0 227 221 0 52 chr1 50838887 50838964 -191825389 + MIR SINE MIR 65 137 -71 498 341 0 0 chr1 50839212 50839347 -191825006 - MIR SINE MIR -109 153 19 208 298 128 11 chr1 50839319 50839413 -191824940 + L3 LINE CR1 1246 1350 -227 * 344 304 17 9 chr1 50839991 50840106 -191824247 - MIR3 SINE MIR -11 197 82 338 318 81 91 chr1 50840102 50840328 -191824025 - L2 LINE L2 -23 3249 3027 * 188 35 35 0 chr1 50840338 50840367 -191823986 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 1947 124 17 7 chr1 50840367 50840647 -191823706 - AluSx SINE Alu -26 286 1 338 318 81 91 chr1 50840647 50840804 -191823549 - L2 LINE L2 -245 3027 2870 1927 101 22 0 chr1 50842003 50842315 -191822038 + AluSx SINE Alu 1 318 0 2531 32 3 13 chr1 50842447 50842761 -191821592 + AluY SINE Alu 1 311 0 506 233 98 18 chr1 50842812 50842915 -191821438 + MIR SINE MIR 47 169 -93 2232 93 6 3 chr1 50842915 50843226 -191821127 + AluSp SINE Alu 1 312 -1 506 233 98 18 chr1 50843226 50843285 -191821068 + MIR SINE MIR 169 222 -40 245 301 32 21 chr1 50843341 50843434 -191820919 - L2 LINE L2 -211 3061 2968 1157 166 72 13 chr1 50843440 50843675 -191820678 + AluJo SINE Alu 41 289 -23 870 62 0 0 chr1 50843873 50843986 -191820367 - AluSp/q SINE Alu -13 300 188 519 285 107 14 chr1 50844054 50844345 -191820008 - L2 LINE L2 -655 2659 2342 263 200 40 0 chr1 50844678 50844728 -191819625 - MIR SINE MIR -109 153 102 207 191 0 0 chr1 50844888 50844930 -191819423 - L2 LINE L2 -215 3057 3016 268 121 0 17 chr1 50845506 50845564 -191818789 - L1ME4a LINE L1 -18 6103 6047 2030 141 0 3 chr1 50845597 50845901 -191818452 + AluSx SINE Alu 1 303 -9 1681 130 52 4 chr1 50846038 50846308 -191818045 - AluJb SINE Alu -19 293 11 820 234 32 91 chr1 50846332 50846411 -191817942 - L1ME LINE L1 -348 5773 5691 2491 50 0 0 chr1 50846411 50846709 -191817644 - AluY SINE Alu -13 298 1 820 234 32 91 chr1 50846709 50846756 -191817597 - L1ME LINE L1 -430 5691 5643 958 223 0 0 chr1 50846756 50846931 -191817422 - FAM SINE Alu 0 175 1 820 234 32 91 chr1 50846931 50847122 -191817231 - L1ME LINE L1 -478 5643 5474 1729 142 24 10 chr1 50847122 50847410 -191816943 + AluJo SINE Alu 1 292 -20 820 234 32 91 chr1 50847410 50847432 -191816921 - L1ME LINE L1 -647 5474 5452 776 215 179 57 chr1 50847669 50848088 -191816265 + MLT1K LTR MaLR 5 474 -2 206 406 77 12 chr1 50848146 50848316 -191816037 - L3 LINE CR1 -1 1576 1396 267 31 0 0 chr1 50848752 50848784 -191815569 + (TG)n Simple_repeat Simple_repeat 1 32 0 243 303 57 33 chr1 50849049 50849171 -191815182 - L3 LINE CR1 -183 1394 1270 277 183 155 0 chr1 50849187 50849258 -191815095 + MIR SINE MIR 29 110 -152 * 341 261 60 8 chr1 50849241 50849375 -191814978 - L2 LINE L2 -104 3209 3069 2068 102 0 3 chr1 50849396 50849714 -191814639 - AluSg SINE Alu 0 317 1 287 298 158 50 chr1 50849926 50850518 -191813835 - L2 LINE L2 -110 3162 2505 1593 183 3 3 chr1 50851086 50851375 -191812978 + AluJb SINE Alu 1 289 -23 1580 84 9 5 chr1 50852041 50852256 -191812097 - AluSg/x SINE Alu -11 299 84 1036 163 181 0 chr1 50852500 50852721 -191811632 - MER58B DNA MER1_type 0 341 81 24 0 0 0 chr1 50852733 50852757 -191811596 + AT_rich Low_complexity Low_complexity 1 24 0 1775 158 0 46 chr1 50852757 50853080 -191811273 + AluJb SINE Alu 1 308 -4 775 263 79 65 chr1 50853098 50853167 -191811186 - L2 LINE L2 -46 3267 3200 1677 173 3 10 chr1 50853167 50853479 -191810874 - AluJo SINE Alu 0 312 3 775 263 79 65 chr1 50853479 50853854 -191810499 - L2 LINE L2 -113 3200 2817 1718 160 3 3 chr1 50853942 50854229 -191810124 - AluJo SINE Alu -21 291 5 344 225 11 45 chr1 50854385 50854474 -191809879 + MLT1J LTR MaLR 376 461 -50 2328 60 3 3 chr1 50855657 50855958 -191808395 + AluY SINE Alu 1 301 -10 1297 194 38 28 chr1 50857136 50857424 -191806929 + AluJo SINE Alu 1 291 -21 2238 86 3 0 chr1 50857430 50857722 -191806631 - AluSx SINE Alu -19 293 1 24 32 0 0 chr1 50857807 50857838 -191806515 + AT_rich Low_complexity Low_complexity 1 31 0 262 172 62 62 chr1 50858221 50858285 -191806068 + MLT1D LTR MaLR 1 64 -441 730 142 18 0 chr1 50858293 50858406 -191805947 - FLAM_A SINE Alu -16 126 12 1948 188 85 26 chr1 50858413 50858838 -191805515 + MLT1D LTR MaLR 53 502 -3 182 292 108 15 chr1 50858942 50859007 -191805346 + MIR SINE MIR 31 101 -161 191 267 33 17 chr1 50859204 50859264 -191805089 - L3 LINE CR1 -636 941 881 1978 123 0 3 chr1 50859317 50859634 -191804719 + AluSx SINE Alu 1 316 0 1794 144 14 3 chr1 50860867 50861159 -191803194 + AluJb SINE Alu 1 295 -17 2143 122 3 0 chr1 50861161 50861472 -191802881 + AluSx SINE Alu 1 312 0 1672 158 29 29 chr1 50862625 50862936 -191801417 + AluJb SINE Alu 1 311 -1 1566 146 0 41 chr1 50863663 50863956 -191800397 + AluJb SINE Alu 26 307 0 614 320 120 9 chr1 50864798 50865023 -191799330 + MIR SINE MIR 11 260 -2 2220 97 7 0 chr1 50865065 50865364 -191798989 - AluSp SINE Alu -12 301 1 196 289 89 0 chr1 50865704 50865794 -191798559 + L2 LINE L2 2703 2800 -514 1718 163 62 3 chr1 50865967 50866255 -191798098 - AluJo SINE Alu -7 305 1 3905 214 72 61 chr1 50866258 50866501 -191797852 - HAL1 LINE L1 0 2507 2268 2189 127 0 3 chr1 50866501 50866800 -191797553 - AluSq SINE Alu -13 300 3 3905 214 72 61 chr1 50866800 50867380 -191796973 - HAL1 LINE L1 -239 2268 1696 2143 136 11 8 chr1 50867380 50867734 -191796619 + L1PA16 LINE L1 5800 6154 -12 1752 185 10 0 chr1 50867734 50868026 -191796327 + AluJb SINE Alu 1 295 -17 2638 52 7 0 chr1 50868029 50868338 -191796015 + AluY SINE Alu 1 311 0 3905 214 72 61 chr1 50868338 50868465 -191795888 - HAL1 LINE L1 -812 1695 1571 1786 164 10 14 chr1 50868465 50868758 -191795595 - AluJo SINE Alu -20 292 1 3905 214 72 61 chr1 50868758 50869131 -191795222 - HAL1 LINE L1 -936 1571 1159 2457 94 0 0 chr1 50869131 50869430 -191794923 - AluY SINE Alu -12 299 1 3905 214 72 61 chr1 50869430 50869442 -191794911 - HAL1 LINE L1 -1348 1159 1149 2072 101 22 0 chr1 50869562 50869874 -191794479 - AluSx SINE Alu 0 318 1 273 331 75 86 chr1 50871066 50871223 -191793130 + L2 LINE L2 2870 3027 -245 2088 127 17 7 chr1 50871223 50871503 -191792850 + AluSx SINE Alu 1 286 -26 188 35 35 0 chr1 50871503 50871532 -191792821 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 273 331 75 86 chr1 50871542 50871768 -191792585 + L2 LINE L2 3027 3249 -23 * 340 304 17 9 chr1 50871764 50871879 -191792474 + MIR3 SINE MIR 82 197 -11 187 318 15 15 chr1 50872457 50872523 -191791830 - L3 LINE CR1 -227 1350 1285 473 341 0 0 chr1 50872523 50872658 -191791695 + MIR SINE MIR 19 153 -109 212 234 0 52 chr1 50872906 50872983 -191791370 - MIR SINE MIR -71 137 64 2165 109 3 3 chr1 50873761 50874070 -191790283 - AluSq SINE Alu 0 309 1 185 214 107 0 chr1 50875599 50875655 -191788698 + MIR SINE MIR 110 171 -91 462 100 0 0 chr1 50875702 50875762 -191788591 + AluJ/FLAM SINE Alu 9 68 -234 568 128 43 21 chr1 50875762 50875856 -191788497 - AluSp/q SINE Alu -52 261 166 880 188 32 38 chr1 50875856 50876042 -191788311 + AluJo SINE Alu 104 288 -24 2023 159 0 0 chr1 50876067 50876369 -191787984 + AluSx SINE Alu 11 312 0 358 305 19 0 chr1 50876677 50876782 -191787571 + L2 LINE L2 3139 3245 -27 301 305 0 9 chr1 50877136 50877241 -191787112 + (CA)n Simple_repeat Simple_repeat 1 104 0 351 303 0 0 chr1 50877289 50877411 -191786942 + (TG)n Simple_repeat Simple_repeat 2 123 0 212 281 20 41 chr1 50877456 50877602 -191786751 + (TATG)n Simple_repeat Simple_repeat 1 143 0 2447 76 0 10 chr1 50879219 50879521 -191784832 - AluY SINE Alu -12 299 1 643 256 103 29 chr1 50880094 50880219 -191784134 - MIR SINE MIR 0 262 148 2931 194 45 30 chr1 50880219 50880399 -191783954 + MER82 DNA MER2_type 1 177 -476 2408 101 0 0 chr1 50880399 50880696 -191783657 + AluSq SINE Alu 1 297 -16 354 23 0 0 chr1 50880698 50880741 -191783612 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 2931 194 45 30 chr1 50880741 50881200 -191783153 + MER82 DNA MER2_type 177 653 0 643 256 103 29 chr1 50881200 50881316 -191783037 - MIR SINE MIR -114 148 3 212 280 0 0 chr1 50881313 50881363 -191782990 - L2 LINE L2 0 3272 3223 * 2287 96 10 0 chr1 50881423 50881714 -191782639 + AluSx SINE Alu 3 296 -16 202 337 11 0 chr1 50881718 50881807 -191782546 + CT-rich Low_complexity Low_complexity 3 92 0 789 237 33 19 chr1 50882064 50882279 -191782074 + MIR SINE MIR 1 218 -44 1667 171 49 0 chr1 50882390 50882677 -191781676 + AluJo SINE Alu 1 301 -11 232 268 0 37 chr1 50882822 50882904 -191781449 - MIR SINE MIR -128 134 56 252 254 28 0 chr1 50883108 50883179 -191781174 + GA-rich Low_complexity Low_complexity 6 78 0 321 47 0 0 chr1 50883274 50883310 -191781043 + (TG)n Simple_repeat Simple_repeat 1 79 0 321 47 0 0 chr1 50883310 50883353 -191781000 + (TG)n Simple_repeat Simple_repeat 1 43 0 361 295 198 14 chr1 50884961 50885178 -191779175 - L2 LINE L2 -2 3270 3014 586 147 9 28 chr1 50885498 50885607 -191778746 - AluSq/x SINE Alu -197 116 10 2241 80 21 3 chr1 50885631 50885920 -191778433 - AluSq SINE Alu -19 294 1 1056 188 0 0 chr1 50885978 50886159 -191778194 - AluJb SINE Alu -5 307 127 2136 123 3 31 chr1 50886163 50886480 -191777873 - AluSx SINE Alu -4 308 1 668 260 81 26 chr1 50886486 50886694 -191777659 - L1MC5 LINE L1 -483 7478 7246 2110 139 3 0 chr1 50886694 50886995 -191777358 + AluSx SINE Alu 5 306 -6 668 260 81 26 chr1 50886995 50887094 -191777259 - L1MC5 LINE L1 -715 7246 7154 2069 116 0 7 chr1 50887098 50887409 -191776944 - AluJb SINE Alu 0 309 1 328 286 49 61 chr1 50887412 50887657 -191776696 - L1M2 LINE L1 -4834 2015 1774 1900 118 8 0 chr1 50887659 50887913 -191776440 - AluSc SINE Alu -53 256 1 2180 89 21 3 chr1 50887913 50888195 -191776158 - AluSx SINE Alu -25 287 1 1928 163 0 3 chr1 50888430 50888730 -191775623 - AluJo SINE Alu -7 305 7 2233 93 0 3 chr1 50888876 50889207 -191775146 - AluY SINE Alu 0 330 1 27 0 0 0 chr1 50889209 50889236 -191775117 + AT_rich Low_complexity Low_complexity 1 27 0 2051 134 0 7 chr1 50889236 50889543 -191774810 - AluSx SINE Alu 0 305 1 710 191 66 109 chr1 50889670 50889887 -191774466 - L1M4 LINE L1 -2820 3326 3101 1906 175 10 0 chr1 50889887 50890195 -191774158 - AluJo SINE Alu -1 311 1 710 191 66 109 chr1 50890195 50890244 -191774109 - L1M4 LINE L1 -3045 3101 3051 2279 115 0 16 chr1 50890244 50890585 -191773768 - AluSx SINE Alu 0 312 1 1809 152 26 33 chr1 50890585 50890887 -191773466 - AluJb SINE Alu -11 301 1 710 191 66 109 chr1 50890887 50891041 -191773312 - L1M4 LINE L1 -3093 3053 2922 1507 152 37 81 chr1 50891043 50891182 -191773171 + AluJo SINE Alu 1 122 -190 2403 83 0 7 chr1 50891182 50891482 -191772871 + AluY SINE Alu 1 298 -13 1507 152 37 81 chr1 50891482 50891639 -191772714 + AluJo SINE Alu 122 284 -28 401 113 31 52 chr1 50891639 50891736 -191772617 - AluSp/q SINE Alu -1 302 208 294 73 0 0 chr1 50892522 50892563 -191771790 + (CGG)n Simple_repeat Simple_repeat 2 42 0 447 242 141 30 chr1 50892867 50892936 -191771417 - MIR SINE MIR -41 221 161 2397 83 0 3 chr1 50892936 50893236 -191771117 - AluSx SINE Alu -7 305 7 447 242 141 30 chr1 50893236 50893364 -191770989 - MIR SINE MIR -101 161 2 832 185 27 1 chr1 50893435 50893606 -191770747 - MER5A DNA MER1_type 0 189 4 405 331 39 0 chr1 50893606 50893721 -191770632 - L2 LINE L2 -567 2747 2628 2032 136 27 0 chr1 50893898 50894199 -191770154 + AluSx SINE Alu 1 309 -3 454 262 209 23 chr1 50894208 50894510 -191769843 + L2 LINE L2 2124 2481 -833 341 250 12 0 chr1 50894525 50894605 -191769748 + L2 LINE L2 3183 3263 -9 2096 120 21 0 chr1 50894862 50895153 -191769200 + AluSx SINE Alu 2 298 -14 867 101 0 39 chr1 50895236 50895365 -191768988 + FLAM_C SINE Alu 1 124 -9 2569 68 3 3 chr1 50895424 50895732 -191768621 + AluSg SINE Alu 1 308 -2 718 163 49 0 chr1 50895862 50895985 -191768368 + FLAM_A SINE Alu 1 129 -4 482 182 123 144 chr1 50896346 50896434 -191767919 + MER5A DNA MER1_type 4 92 -97 2471 80 0 13 chr1 50896434 50896748 -191767605 + AluSx SINE Alu 1 310 -2 482 182 123 144 chr1 50896748 50896846 -191767507 + MER5A DNA MER1_type 92 186 -3 342 0 0 0 chr1 50896944 50896982 -191767371 + (TG)n Simple_repeat Simple_repeat 2 39 0 235 250 33 0 chr1 50897108 50897168 -191767185 - L2 LINE L2 -5 3267 3206 26 0 0 0 chr1 50897324 50897350 -191767003 + GC_rich Low_complexity Low_complexity 1 26 0 367 216 186 0 chr1 50898900 50899002 -191765351 - MIR SINE MIR -31 231 111 2117 108 0 24 chr1 50899003 50899298 -191765055 + AluJo SINE Alu 5 292 -20 228 67 0 0 chr1 50899308 50899338 -191765015 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 301 239 98 0 chr1 50899343 50899435 -191764918 - MIR SINE MIR -128 134 34 281 272 12 130 chr1 50900202 50900364 -191763989 + MIR3 SINE MIR 51 193 -15 190 260 156 0 chr1 50900872 50900949 -191763404 - L2 LINE L2 -97 3216 3128 326 287 60 90 chr1 50901044 50901103 -191763250 + L2 LINE L2 2938 2997 -275 2000 159 3 3 chr1 50901103 50901399 -191762954 - AluSx SINE Alu -12 300 5 326 287 60 90 chr1 50901399 50901506 -191762847 + L2 LINE L2 2997 3099 -173 2601 71 0 0 chr1 50901552 50901861 -191762492 - AluY SINE Alu -2 309 1 2199 111 27 0 chr1 50901880 50902178 -191762175 - AluSq SINE Alu -2 311 6 667 195 8 0 chr1 50902182 50902310 -191762043 - FLAM_C SINE Alu -9 134 6 343 211 0 40 chr1 50902471 50902547 -191761806 - L2 LINE L2 -202 3070 2998 2414 91 10 0 chr1 50902585 50902894 -191761459 + AluSx SINE Alu 1 312 0 1234 237 44 36 chr1 50902896 50903050 -191761303 + HAL1 LINE L1 94 245 -2262 2196 103 20 0 chr1 50903050 50903342 -191761011 - AluSp SINE Alu -15 298 1 1234 237 44 36 chr1 50903342 50903550 -191760803 + HAL1 LINE L1 245 459 -2048 628 87 0 0 chr1 50903556 50903648 -191760705 - Alu SINE Alu 0 312 221 1479 97 11 0 chr1 50903648 50903834 -191760519 - AluSq SINE Alu -125 188 1 267 190 0 0 chr1 50903849 50903907 -191760446 + GA-rich Low_complexity Low_complexity 2 59 0 4272 170 69 38 chr1 50904324 50904802 -191759551 - MER21A LTR ERV1 -45 886 425 1764 183 0 17 chr1 50904802 50905103 -191759250 - AluJb SINE Alu -16 296 1 4272 170 69 38 chr1 50905103 50905463 -191758890 - MER21A LTR ERV1 -506 425 18 378 0 0 0 chr1 50905463 50905505 -191758848 + (CA)n Simple_repeat Simple_repeat 1 42 0 4272 170 69 38 chr1 50905505 50905518 -191758835 - MER21A LTR ERV1 -913 18 7 229 320 124 49 chr1 50905554 50905779 -191758574 - MIR SINE MIR -3 259 18 2264 98 11 0 chr1 50905799 50906085 -191758268 - AluSx SINE Alu -23 289 1 2487 70 0 3 chr1 50906305 50906604 -191757749 - AluY SINE Alu -13 298 1 1191 130 0 0 chr1 50906607 50906769 -191757584 - AluSg/x SINE Alu -19 291 130 261 0 0 0 chr1 50906769 50906798 -191757555 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2070 79 0 26 chr1 50906798 50907065 -191757288 - AluY SINE Alu -27 284 25 299 273 0 20 chr1 50907093 50907192 -191757161 + (TA)n Simple_repeat Simple_repeat 2 98 0 238 210 129 0 chr1 50907218 50907280 -191757073 + MER7A DNA MER2_type 13 80 -266 23 33 0 0 chr1 50907372 50907402 -191756951 + AT_rich Low_complexity Low_complexity 1 30 0 326 324 29 0 chr1 50907402 50907507 -191756846 + MER7A DNA MER2_type 228 335 -1 266 250 0 17 chr1 50907516 50907576 -191756777 + HAL1 LINE L1 462 520 -1987 878 173 30 18 chr1 50907583 50907751 -191756602 + AluJo SINE Alu 121 290 -22 764 271 138 28 chr1 50907761 50908086 -191756267 + HAL1 LINE L1 561 921 -1586 2292 132 0 0 chr1 50908087 50908398 -191755955 + AluSx SINE Alu 1 311 -1 373 302 67 0 chr1 50908597 50908746 -191755607 - MLT1J2 LTR MaLR -12 438 280 648 250 58 32 chr1 50908779 50909073 -191755280 - L1MC4 LINE L1 -733 7228 6957 1038 186 92 20 chr1 50909143 50909449 -191754904 - L1MC5 LINE L1 -25 7936 7609 2386 77 10 0 chr1 50909476 50909773 -191754580 + AluSq SINE Alu 1 300 -13 456 281 69 12 chr1 50909773 50909927 -191754426 - L1M4 LINE L1 -2481 3665 3503 1176 193 9 5 chr1 50909929 50910141 -191754212 - AluJb SINE Alu -16 296 84 319 290 0 22 chr1 50910165 50910303 -191754050 - L1M4 LINE L1 -2665 3481 3347 1858 148 3 18 chr1 50910306 50910442 -191753911 + AluJb SINE Alu 1 137 -175 2361 96 0 0 chr1 50910442 50910735 -191753618 + AluSc SINE Alu 1 293 -16 1858 148 3 18 chr1 50910735 50910881 -191753472 + AluJb SINE Alu 137 279 -33 199 288 121 0 chr1 50911168 50911234 -191753119 + L2 LINE L2 3239 3312 -1 2338 95 7 0 chr1 50911549 50911845 -191752508 - AluSx SINE Alu -14 298 1 400 316 57 79 chr1 50912757 50912985 -191751368 + L2 LINE L2 3050 3272 0 228 273 128 0 chr1 50913476 50913571 -191750782 + MIR SINE MIR 43 143 -65 2227 106 7 0 chr1 50916547 50916839 -191747514 + AluSg SINE Alu 1 294 -16 202 337 11 0 chr1 50916843 50916932 -191747421 + CT-rich Low_complexity Low_complexity 3 92 0 789 237 33 19 chr1 50917189 50917404 -191746949 + MIR SINE MIR 1 218 -44 1667 171 49 0 chr1 50917515 50917802 -191746551 + AluJo SINE Alu 1 301 -11 232 268 0 37 chr1 50917947 50918029 -191746324 - MIR SINE MIR -128 134 56 252 254 28 0 chr1 50918233 50918304 -191746049 + GA-rich Low_complexity Low_complexity 6 78 0 321 47 0 0 chr1 50918399 50918435 -191745918 + (TG)n Simple_repeat Simple_repeat 1 79 0 321 47 0 0 chr1 50918435 50918478 -191745875 + (TG)n Simple_repeat Simple_repeat 1 43 0 361 295 198 14 chr1 50920086 50920303 -191744050 - L2 LINE L2 -2 3270 3014 185 345 191 16 chr1 50920653 50920847 -191743506 - L2 LINE L2 -1054 2260 2033 2132 104 0 0 chr1 50920898 50921166 -191743187 + AluSx SINE Alu 1 268 -44 219 36 0 0 chr1 50921260 50921288 -191743065 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1801 138 21 41 chr1 50921290 50921580 -191742773 - AluJb SINE Alu -23 289 6 2379 86 3 43 chr1 50924949 50925127 -191739226 - AluSq SINE Alu -1 312 151 2524 49 13 3 chr1 50925127 50925432 -191738921 - AluY SINE Alu -3 308 1 2379 86 3 43 chr1 50925432 50925578 -191738775 - AluSq SINE Alu -162 151 1 253 267 42 67 chr1 50925594 50925714 -191738639 - MIR SINE MIR -49 159 43 454 97 0 0 chr1 50925928 50925990 -191738363 - MER58 DNA MER1_type 0 2420 2359 309 180 0 0 chr1 50928649 50928699 -191735654 + MER45A DNA AcHobo 58 107 -71 * 379 50 0 17 chr1 50928697 50928750 -191735603 - AluY SINE Alu -1 301 248 1787 31 0 0 chr1 50928750 50928943 -191735410 - AluY SINE Alu -118 193 1 301 214 57 0 chr1 50928943 50929013 -191735340 + MER45A DNA AcHobo 98 171 -7 707 238 101 44 chr1 50930125 50930233 -191734120 - MIR SINE MIR 0 262 162 2530 73 0 0 chr1 50930233 50930533 -191733820 - AluY SINE Alu -11 300 1 707 238 101 44 chr1 50930533 50930672 -191733681 - MIR SINE MIR -100 162 1 235 214 18 0 chr1 50931645 50931701 -191732652 - MIR SINE MIR -112 150 94 186 239 230 35 chr1 50933641 50933754 -191730599 - MIR SINE MIR -56 206 72 * 1470 246 57 36 chr1 50933750 50934261 -191730092 + L2 LINE L2 2779 3309 -4 190 335 65 80 chr1 50934806 50935069 -191729284 + L2 LINE L2 3014 3272 0 280 244 298 0 chr1 50935122 50935253 -191729100 - MIR SINE MIR -50 212 43 2484 55 0 0 chr1 50937263 50937552 -191726801 + AluY SINE Alu 1 289 -22 2010 128 57 0 chr1 50937568 50937850 -191726503 + AluSx SINE Alu 1 298 -14 597 185 206 0 chr1 50937920 50938066 -191726287 + MIR SINE MIR 19 194 -68 366 294 309 5 chr1 50939734 50940119 -191724234 + L2 LINE L2 1064 1565 -1749 327 248 59 20 chr1 50940288 50940389 -191723964 - MIR SINE MIR -151 111 7 213 298 156 7 chr1 50940508 50940649 -191723704 + L2 LINE L2 1787 1948 -1366 1680 106 158 0 chr1 50940707 50940961 -191723392 + AluSg SINE Alu 1 294 -16 382 327 13 19 chr1 50940998 50941154 -191723199 + L2 LINE L2 2156 2310 -1004 853 187 0 0 chr1 50941199 50941333 -191723020 - AluSq/x SINE Alu -178 134 1 229 262 95 119 chr1 50941333 50941585 -191722768 + L2 LINE L2 2522 2767 -547 2080 116 34 7 chr1 50941629 50941921 -191722432 - AluSx SINE Alu -12 300 1 199 288 121 0 chr1 50942196 50942262 -191722091 + L2 LINE L2 3239 3312 -1 2347 94 7 0 chr1 50942577 50942874 -191721479 - AluSx SINE Alu -13 299 1 400 316 57 79 chr1 50943786 50944014 -191720339 + L2 LINE L2 3050 3272 0 228 273 128 0 chr1 50944505 50944600 -191719753 + MIR SINE MIR 43 143 -65 2151 112 20 0 chr1 50947576 50947870 -191716483 + AluSq SINE Alu 1 300 -13 453 316 133 40 chr1 50947904 50948210 -191716143 - L2 LINE L2 -576 2738 2371 1432 165 94 22 chr1 50948210 50948477 -191715876 + AluJo SINE Alu 1 286 -26 453 316 133 40 chr1 50948477 50948645 -191715708 - L2 LINE L2 -943 2371 2220 637 158 44 9 chr1 50948703 50948817 -191715536 - FRAM SINE Alu -16 160 43 180 350 197 16 chr1 50949138 50949590 -191714763 - L2 LINE L2 -2249 1065 532 33 0 0 0 chr1 50950583 50950616 -191713737 + AT_rich Low_complexity Low_complexity 1 33 0 2499 89 0 0 chr1 50952328 50952641 -191711712 + AluSq SINE Alu 1 313 0 2027 122 3 7 chr1 50953003 50953298 -191711055 - AluSx SINE Alu -18 294 1 296 257 10 0 chr1 50954195 50954296 -191710057 + L1ME3A LINE L1 2208 2309 -4087 2136 101 28 3 chr1 50954296 50954584 -191709769 - AluSg SINE Alu -15 295 1 1468 162 121 15 chr1 50954586 50954851 -191709502 - AluSg SINE Alu -17 293 1 1245 243 22 70 chr1 50954855 50955110 -191709243 + L1ME3A LINE L1 4544 4765 -1450 1740 136 24 0 chr1 50955110 50955361 -191708992 + AluJb SINE Alu 42 298 -14 1245 243 22 70 chr1 50955361 50955607 -191708746 + L1ME3A LINE L1 4765 5021 -1194 1682 201 17 0 chr1 50955607 50955895 -191708458 + AluJo SINE Alu 1 293 -19 942 211 122 36 chr1 50955907 50956211 -191708142 + L1ME3A LINE L1 5839 6168 -71 388 127 0 0 chr1 50956349 50956404 -191707949 - AluJo SINE Alu -15 287 233 931 172 33 0 chr1 50956404 50956555 -191707798 - AluJo SINE Alu -128 184 29 565 122 128 27 chr1 50956555 50956703 -191707650 + L1MB3 LINE L1 5990 6152 -31 1719 141 12 0 chr1 50957308 50957557 -191706796 + AluJb SINE Alu 1 252 -60 355 125 0 7 chr1 50957557 50957606 -191706747 - FLAM_A SINE Alu -251 50 8 622 253 86 30 chr1 50958659 50958892 -191705461 - MIR SINE MIR -8 254 9 1192 124 0 0 chr1 50959102 50959255 -191705098 + AluSx SINE Alu 5 157 -155 1460 171 0 0 chr1 50959255 50959471 -191704882 - AluSx SINE Alu -96 216 1 22 35 0 0 chr1 50959474 50959503 -191704850 + AT_rich Low_complexity Low_complexity 1 29 0 341 304 29 14 chr1 50959870 50960008 -191704345 + MIR3 SINE MIR 3 142 -66 280 306 103 6 chr1 50960049 50960216 -191704137 - MIR SINE MIR -44 218 38 2064 141 10 3 chr1 50960576 50960882 -191703471 + AluSx SINE Alu 1 308 -4 825 268 31 4 chr1 50961596 50961824 -191702529 - MIR SINE MIR -3 259 26 690 158 255 84 chr1 50961828 50962126 -191702227 + MER4C LTR ERV1 1 349 -315 2297 100 17 0 chr1 50962239 50962540 -191701813 - AluSg SINE Alu -4 306 1 1619 152 54 22 chr1 50962549 50962826 -191701527 - AluJb SINE Alu -26 286 1 771 155 52 13 chr1 50962826 50962981 -191701372 + MER4C LTR ERV1 305 465 0 2343 87 3 10 chr1 50964882 50965181 -191699172 - AluSq SINE Alu -16 297 1 774 138 0 43 chr1 50965356 50965494 -191698859 + FLAM_C SINE Alu 2 133 0 917 145 0 15 chr1 50966494 50966625 -191697728 + FLAM_C SINE Alu 1 129 -14 26 0 0 0 chr1 50966625 50966651 -191697702 + AT_rich Low_complexity Low_complexity 1 26 0 609 267 102 15 chr1 50966663 50966869 -191697484 - MIR SINE MIR -30 232 9 2439 108 0 13 chr1 50967494 50967810 -191696543 - AluSx SINE Alu 0 312 1 717 178 15 139 chr1 50968023 50968225 -191696128 - AluJo SINE Alu -15 297 121 1605 166 35 28 chr1 50968299 50968588 -191695765 + AluJo SINE Alu 7 297 -15 2233 105 10 7 chr1 50968875 50969179 -191695174 + AluSx SINE Alu 2 306 -6 534 254 262 39 chr1 50969384 50969784 -191694569 + L2 LINE L2 1616 1926 -1388 1826 183 7 0 chr1 50969784 50970085 -191694268 + AluJo SINE Alu 3 305 -7 534 254 262 39 chr1 50970085 50970299 -191694054 + L2 LINE L2 1926 2367 -947 526 164 137 55 chr1 50970300 50970394 -191693959 + ORSL DNA AcHobo 1 86 -189 2096 152 0 0 chr1 50970394 50970704 -191693649 + AluSx SINE Alu 1 310 -2 526 164 137 55 chr1 50970704 50970792 -191693561 + ORSL DNA AcHobo 86 198 -77 436 143 0 36 chr1 50970866 50970950 -191693403 + AluS SINE Alu 222 302 -7 2191 89 22 35 chr1 50971022 50971337 -191693016 - AluY SINE Alu 0 311 1 1888 157 14 3 chr1 50971587 50971880 -191692473 - AluJb SINE Alu -16 296 1 415 290 166 32 chr1 50971994 50972652 -191691701 + L2 LINE L2 2360 3091 -181 1948 153 0 14 chr1 50972745 50973040 -191691313 - AluJb SINE Alu -17 295 5 341 234 210 42 chr1 50973129 50973296 -191691057 + L1ME2 LINE L1 5907 6101 -63 2350 101 0 10 chr1 50973334 50973642 -191690711 - AluSq SINE Alu -8 305 1 2199 118 20 0 chr1 50973670 50973976 -191690377 - AluSx SINE Alu 0 312 1 245 210 49 28 chr1 50974108 50974180 -191690173 + MIR SINE MIR 88 163 -45 596 311 38 0 chr1 50974722 50974910 -191689443 - MIR SINE MIR 0 262 66 263 186 0 0 chr1 50975918 50975961 -191688392 + L2 LINE L2 3221 3263 -9 203 152 22 0 chr1 50977296 50977342 -191687011 + (CGGGG)n Simple_repeat Simple_repeat 5 51 0 224 262 16 0 chr1 50977368 50977429 -191686924 + (CGGGG)n Simple_repeat Simple_repeat 3 64 0 384 322 49 0 chr1 50977836 50977979 -191686374 + MIR SINE MIR 98 247 -15 609 208 107 6 chr1 50977994 50978153 -191686200 - MIR SINE MIR -13 249 75 349 76 0 165 chr1 50978159 50978192 -191686161 + LTR26B LTR ERV1 3 40 -491 1820 150 28 3 chr1 50978192 50978478 -191685875 + AluJb SINE Alu 1 293 -19 2613 40 3 0 chr1 50978483 50978781 -191685572 + AluY SINE Alu 1 299 -12 349 76 0 165 chr1 50978781 50978820 -191685533 + LTR26B LTR ERV1 44 68 -463 1941 100 4 0 chr1 50978820 50979079 -191685274 + AluSx SINE Alu 39 298 -14 373 282 13 47 chr1 50979093 50979242 -191685111 + L1ME LINE L1 10 153 -5917 229 222 93 0 chr1 50979689 50979743 -191684610 + L1ME LINE L1 517 575 -5495 1592 183 36 7 chr1 50979766 50980045 -191684308 - AluJb SINE Alu -25 287 1 2064 159 0 0 chr1 50980113 50980414 -191683939 - AluJo SINE Alu -11 301 1 22 0 0 0 chr1 50980414 50980436 -191683917 + AT_rich Low_complexity Low_complexity 1 22 0 1048 165 6 11 chr1 50980520 50980533 -191683820 + AluJb SINE Alu 120 132 -180 1877 156 31 0 chr1 50980533 50980821 -191683532 + AluJb SINE Alu 1 297 -15 1048 165 6 11 chr1 50980821 50980983 -191683370 + AluJb SINE Alu 132 294 -18 2065 132 3 6 chr1 50980985 50981296 -191683057 + AluSg SINE Alu 1 310 0 252 213 19 91 chr1 50981358 50981402 -191682951 + MLT1E2 LTR MaLR 1 47 -458 1857 134 7 24 chr1 50981402 50981692 -191682661 + AluJo SINE Alu 11 295 -17 252 213 19 91 chr1 50981692 50981772 -191682581 + MLT1E2 LTR MaLR 47 109 -396 4755 28 0 0 chr1 50981793 50982300 -191682053 - SVA Other Other 0 1386 880 467 322 17 33 chr1 50982425 50982605 -191681748 - MER5B DNA MER1_type -1 177 1 418 194 102 20 chr1 50982731 50982829 -191681524 + MIR SINE MIR 107 212 -50 749 301 34 0 chr1 50983600 50983806 -191680547 + MIR SINE MIR 2 214 -48 2437 51 3 3 chr1 50983887 50984179 -191680174 + AluY SINE Alu 1 292 -19 198 232 107 0 chr1 50984190 50984246 -191680107 - MIR3 SINE MIR -14 194 133 1616 181 11 11 chr1 50984538 50984819 -191679534 + AluJb SINE Alu 6 286 -26 1887 137 48 10 chr1 50985023 50985315 -191679038 - AluSx SINE Alu -9 303 1 2357 104 10 0 chr1 50985324 50985631 -191678722 - AluSx SINE Alu -2 310 1 1191 197 0 14 chr1 50985747 50985960 -191678393 - AluJo SINE Alu -18 294 85 2619 75 0 0 chr1 50985960 50986267 -191678086 - AluSx SINE Alu -5 307 1 860 161 63 0 chr1 50986283 50986426 -191677927 - AluJ SINE Alu -32 280 129 1289 126 23 0 chr1 50986439 50986613 -191677740 + AluSq SINE Alu 1 178 -135 494 103 0 0 chr1 50986613 50986681 -191677672 + Alu SINE Alu 228 295 -15 752 189 8 0 chr1 50986681 50986803 -191677550 - AluJ SINE Alu -188 124 2 278 325 50 0 chr1 50986814 50986934 -191677419 - L1ME LINE L1 -517 5604 5479 389 255 104 61 chr1 50987017 50987295 -191677058 - L1ME LINE L1 -751 5395 5106 2542 68 0 0 chr1 50987311 50987605 -191676748 + AluSc SINE Alu 1 294 -15 1439 185 46 20 chr1 50987649 50987951 -191676402 - AluJo SINE Alu -2 310 1 1103 130 17 11 chr1 50987966 50988143 -191676210 - AluSg/x SINE Alu -1 309 132 1705 131 57 47 chr1 50988143 50988464 -191675889 - AluSx SINE Alu 0 312 4 1903 156 24 0 chr1 50988519 50988814 -191675539 - AluJb SINE Alu -10 302 1 762 214 65 7 chr1 50988815 50988969 -191675384 - FRAM SINE Alu -3 163 1 2365 109 0 0 chr1 50988996 50989299 -191675054 - AluSg SINE Alu -7 303 1 2036 150 0 7 chr1 50989461 50989767 -191674586 - AluJb SINE Alu -8 304 1 430 235 0 0 chr1 50989830 50989911 -191674442 + L2 LINE L2 3179 3259 -13 2303 81 0 7 chr1 50990540 50990858 -191673495 + AluSp SINE Alu 2 317 0 180 368 15 15 chr1 50990887 50990955 -191673398 + L2 LINE L2 3200 3267 -5 1257 291 247 37 chr1 50991034 50991877 -191672476 - L3 LINE CR1 -4 1573 554 1070 204 64 28 chr1 50992130 50992380 -191671973 + MIR SINE MIR 2 260 -2 205 342 89 35 chr1 50993121 50993378 -191670975 + L2 LINE L2 2796 3058 -214 539 246 78 70 chr1 50993538 50993679 -191670674 + MIR SINE MIR 5 143 -119 1520 144 25 103 chr1 50993679 50993999 -191670354 + AluJo SINE Alu 1 295 -17 2174 122 0 0 chr1 50994005 50994314 -191670039 + AluSx SINE Alu 5 313 0 539 246 78 70 chr1 50994314 50994419 -191669934 + MIR SINE MIR 147 262 0 1633 180 0 24 chr1 50994464 50994753 -191669600 + AluJo SINE Alu 16 297 -15 222 318 216 6 chr1 50994929 50995105 -191669248 + L2 LINE L2 2590 2802 -512 32 57 0 0 chr1 50997437 50997490 -191666863 + GC_rich Low_complexity Low_complexity 1 53 0 720 264 18 66 chr1 50998763 50998794 -191665559 - MIR SINE MIR -43 219 188 2361 74 0 3 chr1 50998794 50999090 -191665263 - AluSg SINE Alu -15 295 1 720 264 18 66 chr1 50999090 50999285 -191665068 - MIR SINE MIR -74 188 4 1864 120 67 23 chr1 50999437 50999736 -191664617 + AluJb SINE Alu 1 312 0 2192 60 8 125 chr1 50999834 51000186 -191664167 + AluY SINE Alu 1 311 0 2112 64 50 7 chr1 51000213 51000493 -191663860 - AluSg SINE Alu -18 292 1 2287 90 23 0 chr1 51000774 51001073 -191663280 - AluSc SINE Alu -3 306 1 1346 159 64 9 chr1 51001296 51001454 -191662899 - AluJo SINE Alu -22 290 113 2105 116 10 0 chr1 51001454 51001746 -191662607 - AluSx SINE Alu -17 295 1 1346 159 64 9 chr1 51001746 51001820 -191662533 - AluJo SINE Alu -199 113 45 1699 240 35 59 chr1 51002555 51002956 -191661397 - MER74B LTR ERVL 0 622 238 1393 175 106 18 chr1 51002956 51003230 -191661123 + AluJo SINE Alu 1 298 -14 1699 240 35 59 chr1 51003230 51003407 -191660946 - MER74B LTR ERVL -384 238 58 2106 100 78 0 chr1 51003811 51004092 -191660261 + AluSp SINE Alu 1 303 -10 1638 166 20 43 chr1 51004872 51005173 -191659180 - AluJo SINE Alu -18 294 1 2818 29 0 3 chr1 51005191 51005506 -191658847 + AluYb8 SINE Alu 5 318 0 330 279 62 16 chr1 51005513 51005642 -191658711 - MIR SINE MIR -76 186 52 1720 65 8 32 chr1 51005681 51005929 -191658424 + AluY SINE Alu 1 242 -69 1850 98 21 113 chr1 51005991 51006319 -191658034 - AluYb8 SINE Alu -20 298 1 1687 173 6 58 chr1 51006319 51006485 -191657868 - AluJb SINE Alu -15 297 153 2338 97 0 29 chr1 51006485 51006795 -191657558 - AluSx SINE Alu -11 301 1 1687 173 6 58 chr1 51006795 51006941 -191657412 - AluJb SINE Alu -159 153 1 717 170 7 37 chr1 51006972 51007107 -191657246 + AluJb SINE Alu 2 132 -180 1967 154 53 19 chr1 51007222 51007599 -191656754 + L1MB8 LINE L1 5368 5757 -427 1924 149 0 36 chr1 51007600 51007737 -191656616 + AluJb SINE Alu 1 141 -171 2439 55 0 3 chr1 51007737 51008026 -191656327 + AluY SINE Alu 1 288 -23 438 20 0 0 chr1 51008027 51008078 -191656275 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1924 149 0 36 chr1 51008078 51008247 -191656106 + AluJb SINE Alu 140 298 -14 2284 149 54 88 chr1 51008252 51008479 -191655874 + L1MB3 LINE L1 5587 5820 -363 2303 87 20 3 chr1 51008479 51008777 -191655576 + AluY SINE Alu 1 303 -8 2196 126 0 7 chr1 51008779 51009081 -191655272 + AluSp SINE Alu 1 300 -13 2284 149 54 88 chr1 51009081 51009415 -191654938 + L1MB3 LINE L1 5821 6131 -52 1905 110 31 77 chr1 51009415 51009553 -191654800 + AluSx SINE Alu 1 144 -168 2310 64 43 0 chr1 51009553 51009835 -191654518 + AluSp SINE Alu 1 294 -19 1905 110 31 77 chr1 51009835 51010023 -191654330 + AluSx SINE Alu 144 312 0 2284 149 54 88 chr1 51010023 51010068 -191654285 + L1MB3 LINE L1 6131 6176 -7 586 164 8 31 chr1 51010079 51010207 -191654146 + L1MB8 LINE L1 5825 5949 -229 271 333 140 0 chr1 51010265 51010379 -191653974 - L2 LINE L2 -6 3266 3137 381 253 182 24 chr1 51010465 51010635 -191653718 + L2 LINE L2 3113 3309 -4 22 70 0 0 chr1 51011177 51011220 -191653133 + AT_rich Low_complexity Low_complexity 1 43 0 804 206 34 0 chr1 51011255 51011401 -191652952 - AluJb SINE Alu -32 280 130 2478 67 7 0 chr1 51011413 51011710 -191652643 + AluSg SINE Alu 1 299 -11 2328 110 0 0 chr1 51011712 51012022 -191652331 + AluSg SINE Alu 1 310 0 207 265 106 69 chr1 51012823 51013068 -191651285 + L2 LINE L2 3010 3263 -9 232 267 57 9 chr1 51013455 51013560 -191650793 + MIR3 SINE MIR 77 186 -22 2220 102 0 3 chr1 51015061 51015354 -191648999 - AluSc SINE Alu -17 292 1 2526 72 13 0 chr1 51015577 51015882 -191648471 - AluSp SINE Alu -4 309 1 2167 103 29 29 chr1 51015882 51016192 -191648161 - AluSq SINE Alu -3 310 1 204 315 22 22 chr1 51016518 51016607 -191647746 + MIR SINE MIR 4 92 -170 556 143 0 0 chr1 51016620 51016704 -191647649 - AluJ/FLAM SINE Alu -227 85 2 254 299 171 27 chr1 51016716 51016837 -191647516 + MIR SINE MIR 100 246 -16 2001 168 106 23 chr1 51016837 51017128 -191647225 - MER47B DNA MER2_type -1905 418 86 2513 78 0 0 chr1 51017128 51017435 -191646918 - AluSx SINE Alu -5 307 1 2001 168 106 23 chr1 51017435 51017529 -191646824 - MER47B DNA MER2_type -2237 86 1 254 299 171 27 chr1 51017529 51017549 -191646804 + MIR SINE MIR 246 262 0 551 269 120 26 chr1 51018484 51018718 -191645635 + MIR SINE MIR 2 257 -5 220 236 41 122 chr1 51018848 51018971 -191645382 - L2 LINE L2 -603 2711 2599 591 251 66 18 chr1 51019048 51019215 -191645138 + MIR SINE MIR 14 188 -74 704 172 23 31 chr1 51019224 51019352 -191645001 - FRAM SINE Alu -12 164 38 204 273 13 39 chr1 51019366 51019443 -191644910 + MIR SINE MIR 187 261 -1 446 307 298 7 chr1 51019462 51020003 -191644350 - L2 LINE L2 -815 2499 1802 232 382 59 0 chr1 51021471 51021573 -191642780 - MIR SINE MIR -153 109 2 297 312 37 9 chr1 51021972 51022081 -191642272 + MIR3 SINE MIR 91 202 -6 344 345 17 6 chr1 51022886 51023063 -191641290 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 262 266 16 105 chr1 51023065 51023189 -191641164 - L2 LINE L2 -4 3309 3197 680 176 6 0 chr1 51023197 51023362 -191640991 + (TCCA)n Simple_repeat Simple_repeat 3 168 0 190 234 0 0 chr1 51023590 51023637 -191640716 - L2 LINE L2 -221 3051 3005 2246 102 3 0 chr1 51024289 51024594 -191639759 + AluSx SINE Alu 2 307 -5 350 385 6 18 chr1 51025062 51025231 -191639122 + MIR3 SINE MIR 42 208 0 491 283 150 5 chr1 51025238 51025425 -191638928 - MIR SINE MIR -21 241 28 227 261 0 17 chr1 51025717 51025836 -191638517 + (CCCA)n Simple_repeat Simple_repeat 4 120 0 310 313 216 6 chr1 51026603 51026779 -191637574 + MIR SINE MIR 47 259 -3 1780 152 7 14 chr1 51027688 51027984 -191636369 + AluJo SINE Alu 7 300 -12 1911 143 7 0 chr1 51028529 51028823 -191635530 + AluSx SINE Alu 1 296 -16 182 196 36 0 chr1 51028881 51028937 -191635416 + (TTGGGG)n Simple_repeat Simple_repeat 3 60 0 224 213 16 0 chr1 51028961 51029022 -191635331 + (TTGGGG)n Simple_repeat Simple_repeat 2 63 0 660 213 19 0 chr1 51030051 51030211 -191634142 - L1MB5 LINE L1 0 6174 6012 1145 138 51 99 chr1 51030234 51030546 -191633807 - L1ME1 LINE L1 -5 6161 5865 2312 105 0 9 chr1 51030564 51030879 -191633474 - AluSx SINE Alu 0 312 1 475 289 64 37 chr1 51031240 51031427 -191632926 + MIR SINE MIR 46 237 -25 1055 138 0 6 chr1 51032026 51032207 -191632146 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1299 117 0 11 chr1 51032217 51032393 -191631960 - AluSg/x SINE Alu -3 309 134 2092 126 0 7 chr1 51032393 51032694 -191631659 - AluSx SINE Alu -13 299 1 1299 117 0 11 chr1 51032694 51032705 -191631648 - AluSg/x SINE Alu -178 134 124 374 300 19 44 chr1 51032794 51032954 -191631399 + MIR SINE MIR 105 260 -2 192 152 0 0 chr1 51033031 51033064 -191631289 + GA-rich Low_complexity Low_complexity 1 33 0 607 257 108 28 chr1 51033193 51033407 -191630946 - MIR SINE MIR -1 261 31 749 183 0 0 chr1 51034104 51034224 -191630129 + FLAM_C SINE Alu 1 120 -13 758 243 15 29 chr1 51034539 51034745 -191629608 + MIR3 SINE MIR 5 207 -1 36 62 0 0 chr1 51037028 51037092 -191627261 + GC_rich Low_complexity Low_complexity 1 64 0 1572 184 10 10 chr1 51037931 51038230 -191626123 - AluJo SINE Alu -12 300 2 301 194 65 0 chr1 51038765 51038827 -191625526 + MIR SINE MIR 78 143 -65 512 150 406 0 chr1 51038832 51038965 -191625388 + AluSx SINE Alu 1 187 -125 643 276 105 25 chr1 51039988 51040227 -191624126 - MIR SINE MIR -1 261 4 292 272 0 70 chr1 51040855 51040969 -191623384 - MIR SINE MIR -109 153 48 240 312 75 11 chr1 51041322 51041415 -191622938 + MIR SINE MIR 24 122 -86 188 67 33 0 chr1 51041633 51041663 -191622690 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 211 267 0 0 chr1 51041776 51041821 -191622532 + C-rich Low_complexity Low_complexity 4 48 0 252 217 9 17 chr1 51041970 51042085 -191622268 + GA-rich Low_complexity Low_complexity 2 115 0 180 0 0 0 chr1 51042672 51042692 -191621661 + (CAGAG)n Simple_repeat Simple_repeat 2 21 0 826 169 0 7 chr1 51043016 51043152 -191621201 + FAM SINE Alu 1 44 -5 430 316 194 14 chr1 51043158 51043619 -191620734 + L2 LINE L2 2709 3311 -2 201 143 0 0 chr1 51043882 51043917 -191620436 + (CA)n Simple_repeat Simple_repeat 2 36 0 250 309 154 41 chr1 51046241 51046364 -191617989 - MIR SINE MIR -124 138 2 208 326 63 17 chr1 51046404 51046547 -191617806 + MIR SINE MIR 56 202 -60 353 293 36 14 chr1 51047310 51047450 -191616903 + L2 LINE L2 2730 2872 -442 658 301 92 17 chr1 51048229 51048588 -191615765 + LTR16A LTR ERVL 19 404 -46 213 39 0 0 chr1 51050043 51050069 -191614284 + (GGA)n Simple_repeat Simple_repeat 2 27 0 2175 115 3 6 chr1 51051548 51051861 -191612492 - AluSx SINE Alu 0 312 1 784 247 58 73 chr1 51051948 51052318 -191612035 - L1M4 LINE L1 -309 5812 5477 1785 164 7 29 chr1 51052330 51052640 -191611713 + AluJb SINE Alu 1 303 -9 318 356 0 17 chr1 51052690 51052870 -191611483 + CT-rich Low_complexity Low_complexity 3 179 0 195 380 66 0 chr1 51053631 51053752 -191610601 + MIR3 SINE MIR 6 134 -74 1598 178 3 31 chr1 51054123 51054446 -191609907 + AluJb SINE Alu 1 315 0 214 313 0 15 chr1 51054608 51054675 -191609678 + MIR SINE MIR 30 95 -113 * 692 317 107 18 chr1 51054667 51055005 -191609348 + L2 LINE L2 2919 3286 -27 280 252 36 79 chr1 51055020 51055159 -191609194 + MIR SINE MIR 108 240 -22 208 224 0 17 chr1 51055245 51055303 -191609050 + (CCCCG)n Simple_repeat Simple_repeat 1 57 0 21 36 0 0 chr1 51055449 51055477 -191608876 + GC_rich Low_complexity Low_complexity 1 28 0 221 163 0 0 chr1 51056112 51056155 -191608198 + (TG)n Simple_repeat Simple_repeat 1 43 0 333 0 0 0 chr1 51056755 51056792 -191607561 + (CA)n Simple_repeat Simple_repeat 2 38 0 853 148 8 0 chr1 51056867 51056995 -191607358 + FLAM_C SINE Alu 5 133 0 279 0 0 0 chr1 51057238 51057269 -191607084 + (TG)n Simple_repeat Simple_repeat 1 31 0 708 238 109 0 chr1 51057914 51058107 -191606246 + MIR SINE MIR 31 244 -18 212 89 0 44 chr1 51059446 51059491 -191604862 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 2193 129 0 0 chr1 51059618 51059927 -191604426 - AluSx SINE Alu -3 309 1 518 309 54 25 chr1 51060217 51060421 -191603932 + MIR SINE MIR 21 230 -32 924 242 35 13 chr1 51061849 51062087 -191602266 + MIR SINE MIR 14 262 0 2046 89 3 83 chr1 51062089 51062445 -191601908 - AluSx SINE Alu 0 330 1 214 306 0 0 chr1 51062461 51062523 -191601830 + (ATGGTG)n Simple_repeat Simple_repeat 6 67 0 764 203 154 26 chr1 51062533 51062760 -191601593 - MIR SINE MIR 0 262 7 239 345 6 18 chr1 51062761 51062926 -191601427 + (TGG)n Simple_repeat Simple_repeat 3 165 0 184 211 105 63 chr1 51064284 51064379 -191599974 + MIR3 SINE MIR 6 104 -104 1915 125 57 10 chr1 51064432 51064729 -191599624 + AluSx SINE Alu 2 312 0 1701 134 3 96 chr1 51064946 51065290 -191599063 + AluJb SINE Alu 1 312 0 24 32 0 0 chr1 51067206 51067237 -191597116 + AT_rich Low_complexity Low_complexity 1 31 0 276 311 34 34 chr1 51069156 51069275 -191595078 - MIR3 SINE MIR -41 167 49 873 181 70 130 chr1 51070257 51070527 -191593826 - MIR SINE MIR 0 262 9 2142 195 54 71 chr1 51070697 51071272 -191593081 + MLT1F1 LTR MaLR 1 565 -2 2142 125 0 13 chr1 51073252 51073563 -191590790 + AluSx SINE Alu 1 307 -5 186 43 0 0 chr1 51074312 51074335 -191590018 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 31 82 0 0 chr1 51074481 51074554 -191589799 + GC_rich Low_complexity Low_complexity 1 73 0 450 0 0 0 chr1 51074924 51074974 -191589379 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 240 86 0 0 chr1 51076786 51076821 -191587532 + (TCCCC)n Simple_repeat Simple_repeat 2 36 0 215 59 0 29 chr1 51078445 51078479 -191585874 + (CGGGG)n Simple_repeat Simple_repeat 4 36 0 28 0 0 0 chr1 51078508 51078536 -191585817 + GC_rich Low_complexity Low_complexity 1 28 0 218 244 26 35 chr1 51078765 51078880 -191585473 + (CAGAGA)n Simple_repeat Simple_repeat 3 116 0 527 289 129 10 chr1 51084120 51084314 -191580039 + MIR SINE MIR 32 248 -14 210 388 12 0 chr1 51084419 51084504 -191579849 + MIR SINE MIR 79 164 -98 287 333 87 0 chr1 51085172 51085298 -191579055 + MIR SINE MIR 97 233 -29 208 225 22 214 chr1 51085319 51085497 -191578856 - L3 LINE CR1 -10 1567 1424 794 273 16 0 chr1 51085869 51086092 -191578261 + MIR SINE MIR 35 262 0 310 281 0 34 chr1 51087081 51087170 -191577183 - L2 LINE L2 -3 3269 3184 202 264 0 19 chr1 51087190 51087243 -191577110 + CT-rich Low_complexity Low_complexity 1 52 0 2217 88 20 0 chr1 51087768 51088073 -191576280 - AluSx SINE Alu 0 312 2 406 290 31 43 chr1 51088219 51088381 -191575972 + MIR SINE MIR 61 220 -42 301 309 20 59 chr1 51088392 51088544 -191575809 - L2 LINE L2 0 3272 3127 218 367 33 17 chr1 51088522 51088642 -191575711 + MIR SINE MIR 141 262 0 * 266 306 14 49 chr1 51088737 51088881 -191575472 - L2 LINE L2 -219 3053 2915 454 305 101 48 chr1 51089301 51089892 -191574461 - L1ME4a LINE L1 -56 6065 5507 953 129 0 6 chr1 51089892 51090055 -191574298 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 1642 104 68 12 chr1 51090055 51090305 -191574048 - AluSx SINE Alu -48 264 1 454 305 101 48 chr1 51090305 51090425 -191573928 - L1ME4a LINE L1 -614 5507 5395 886 168 0 0 chr1 51090425 51090556 -191573797 - FLAM_A SINE Alu -2 131 1 454 305 101 48 chr1 51090556 51090606 -191573747 - L1ME4a LINE L1 -726 5395 5256 1796 253 60 61 chr1 51090862 51091343 -191573010 + L2 LINE L2 2225 2705 -608 1656 156 36 11 chr1 51091343 51091647 -191572706 + AluJo SINE Alu 1 311 0 1796 253 60 61 chr1 51091647 51092169 -191572184 + L2 LINE L2 2705 3234 -79 7074 21 0 0 chr1 51092766 51093686 -191570667 - L1PA3 LINE L1 -806 5340 4421 7310 15 0 0 chr1 51093686 51094502 -191569851 + L1PA3 LINE L1 5336 6155 0 248 307 16 55 chr1 51094581 51094708 -191569645 + MIR SINE MIR 76 197 -65 2425 88 0 0 chr1 51094789 51095096 -191569257 - AluSx SINE Alu -5 307 1 189 298 18 0 chr1 51095136 51095193 -191569160 + L2 LINE L2 3254 3311 -2 218 337 0 0 chr1 51095193 51095282 -191569071 + (TGAA)n Simple_repeat Simple_repeat 1 89 0 674 243 135 27 chr1 51095291 51095513 -191568840 - MIR SINE MIR -1 261 16 227 213 0 0 chr1 51095528 51095575 -191568778 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 506 302 52 21 chr1 51096078 51096270 -191568083 - MIR SINE MIR -20 242 45 370 287 98 44 chr1 51096297 51096543 -191567810 - MIR SINE MIR 0 262 6 * 432 324 22 0 chr1 51096541 51096677 -191567676 + MIR SINE MIR 108 246 -16 2046 84 30 30 chr1 51097806 51098103 -191566250 - AluSq SINE Alu -16 297 1 21 0 0 0 chr1 51101593 51101614 -191562739 + AT_rich Low_complexity Low_complexity 1 21 0 271 318 0 32 chr1 51101645 51101871 -191562482 + CT-rich Low_complexity Low_complexity 1 218 0 2042 114 34 0 chr1 51102679 51102976 -191561377 + AluSx SINE Alu 1 307 -5 330 161 215 0 chr1 51102976 51103069 -191561284 + MIR3 SINE MIR 81 193 -15 221 237 0 79 chr1 51104087 51104163 -191560190 + L2 LINE L2 2993 3062 -210 225 200 31 62 chr1 51104340 51104405 -191559948 - L2 LINE L2 -2820 494 432 283 299 23 0 chr1 51105396 51105483 -191558870 + L3 LINE CR1 1386 1474 -103 425 342 121 35 chr1 51106219 51106355 -191557998 - L2 LINE L2 -2 3270 3147 2144 99 10 29 chr1 51106355 51106669 -191557684 + AluSx SINE Alu 5 312 0 425 342 121 35 chr1 51106669 51107396 -191556957 - L2 LINE L2 -125 3147 2297 847 187 58 44 chr1 51107418 51107458 -191556895 - MIR SINE MIR -25 237 199 2108 129 0 0 chr1 51107458 51107767 -191556586 + AluSg SINE Alu 1 309 -1 847 187 58 44 chr1 51107767 51107951 -191556402 - MIR SINE MIR -63 199 10 226 337 12 0 chr1 51108087 51108173 -191556180 + MIR3 SINE MIR 74 160 -48 2140 95 3 3 chr1 51108342 51108636 -191555717 - AluSq SINE Alu -11 302 9 218 259 12 12 chr1 51109186 51109271 -191555082 + (CA)n Simple_repeat Simple_repeat 1 85 0 782 161 90 0 chr1 51109706 51109861 -191554492 + MER45A DNA AcHobo 7 175 -3 2131 119 0 13 chr1 51109875 51110187 -191554166 - AluSq SINE Alu -5 308 1 484 264 34 7 chr1 51110401 51110549 -191553804 + MIR SINE MIR 111 262 0 847 165 0 0 chr1 51110561 51110694 -191553659 - FLAM_C SINE Alu 0 133 1 305 319 64 7 chr1 51111040 51111181 -191553172 + MIR SINE MIR 57 205 -57 207 195 0 0 chr1 51111471 51111512 -191552841 + (TG)n Simple_repeat Simple_repeat 2 42 0 1986 148 0 3 chr1 51112018 51112309 -191552044 - AluJb SINE Alu -22 290 1 535 292 199 0 chr1 51112571 51112807 -191551546 - L3 LINE CR1 -10 1567 1285 267 307 25 49 chr1 51112851 51113014 -191551339 + L2 LINE L2 2939 3097 -175 265 314 111 7 chr1 51113165 51113318 -191551035 + MIR3 SINE MIR 40 208 0 201 208 38 19 chr1 51115400 51115453 -191548900 + C-rich Low_complexity Low_complexity 4 57 0 379 255 132 0 chr1 51117243 51117349 -191547004 - L2 LINE L2 -2 3311 3192 1070 204 64 28 chr1 51118220 51118470 -191545883 + MIR SINE MIR 2 260 -2 205 342 89 35 chr1 51119211 51119468 -191544885 + L2 LINE L2 2796 3058 -214 539 246 78 70 chr1 51119628 51119769 -191544584 + MIR SINE MIR 5 143 -119 1520 144 25 103 chr1 51119769 51120089 -191544264 + AluJo SINE Alu 1 295 -17 2174 122 0 0 chr1 51120095 51120404 -191543949 + AluSx SINE Alu 5 313 0 539 246 78 70 chr1 51120404 51120509 -191543844 + MIR SINE MIR 147 262 0 1633 180 0 24 chr1 51120554 51120843 -191543510 + AluJo SINE Alu 16 297 -15 222 318 216 6 chr1 51121019 51121195 -191543158 + L2 LINE L2 2590 2802 -512 32 57 0 0 chr1 51123527 51123580 -191540773 + GC_rich Low_complexity Low_complexity 1 53 0 720 264 18 66 chr1 51124853 51124884 -191539469 - MIR SINE MIR -43 219 188 2371 74 0 3 chr1 51124884 51125181 -191539172 - AluSg SINE Alu -14 296 1 720 264 18 66 chr1 51125181 51125376 -191538977 - MIR SINE MIR -74 188 4 1864 120 67 23 chr1 51125528 51125827 -191538526 + AluJb SINE Alu 1 312 0 2074 54 9 132 chr1 51125925 51126281 -191538072 + AluY SINE Alu 1 311 0 2112 64 50 7 chr1 51126308 51126588 -191537765 - AluSg SINE Alu -18 292 1 2287 90 23 0 chr1 51126869 51127168 -191537185 - AluSc SINE Alu -3 306 1 1346 159 64 9 chr1 51127391 51127549 -191536804 - AluJo SINE Alu -22 290 113 2105 116 10 0 chr1 51127549 51127841 -191536512 - AluSx SINE Alu -17 295 1 1346 159 64 9 chr1 51127841 51127915 -191536438 - AluJo SINE Alu -199 113 45 1699 240 35 59 chr1 51128650 51129051 -191535302 - MER74B LTR ERVL 0 622 238 1543 153 106 18 chr1 51129051 51129325 -191535028 + AluJo SINE Alu 1 298 -14 1699 240 35 59 chr1 51129325 51129502 -191534851 - MER74B LTR ERVL -384 238 58 2106 100 78 0 chr1 51129906 51130187 -191534166 + AluSp SINE Alu 1 303 -10 1638 166 20 43 chr1 51130967 51131268 -191533085 - AluJo SINE Alu -18 294 1 2794 32 0 3 chr1 51131286 51131601 -191532752 + AluYb8 SINE Alu 5 318 0 330 279 62 16 chr1 51131608 51131737 -191532616 - MIR SINE MIR -76 186 52 1757 54 8 73 chr1 51131776 51132035 -191532318 + AluY SINE Alu 1 242 -69 1850 98 21 113 chr1 51132097 51132425 -191531928 - AluYb8 SINE Alu -20 298 1 1687 173 6 58 chr1 51132425 51132591 -191531762 - AluJb SINE Alu -15 297 153 2338 97 0 29 chr1 51132591 51132901 -191531452 - AluSx SINE Alu -11 301 1 1687 173 6 58 chr1 51132901 51133047 -191531306 - AluJb SINE Alu -159 153 1 717 170 7 37 chr1 51133078 51133213 -191531140 + AluJb SINE Alu 2 132 -180 1967 154 53 19 chr1 51133328 51133705 -191530648 + L1MB8 LINE L1 5368 5757 -427 1924 149 0 36 chr1 51133706 51133843 -191530510 + AluJb SINE Alu 1 141 -171 2439 55 0 3 chr1 51133843 51134132 -191530221 + AluY SINE Alu 1 288 -23 438 20 0 0 chr1 51134133 51134184 -191530169 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1924 149 0 36 chr1 51134184 51134353 -191530000 + AluJb SINE Alu 140 298 -14 2284 149 54 88 chr1 51134358 51134585 -191529768 + L1MB3 LINE L1 5587 5820 -363 2303 87 20 3 chr1 51134585 51134883 -191529470 + AluY SINE Alu 1 303 -8 2196 126 0 7 chr1 51134885 51135187 -191529166 + AluSp SINE Alu 1 300 -13 2284 149 54 88 chr1 51135187 51135521 -191528832 + L1MB3 LINE L1 5821 6131 -52 1905 110 31 77 chr1 51135521 51135659 -191528694 + AluSx SINE Alu 1 144 -168 2310 64 43 0 chr1 51135659 51135941 -191528412 + AluSp SINE Alu 1 294 -19 1905 110 31 77 chr1 51135941 51136129 -191528224 + AluSx SINE Alu 144 312 0 2284 149 54 88 chr1 51136129 51136174 -191528179 + L1MB3 LINE L1 6131 6176 -7 586 164 8 31 chr1 51136185 51136313 -191528040 + L1MB8 LINE L1 5825 5949 -229 271 333 140 0 chr1 51136371 51136485 -191527868 - L2 LINE L2 -6 3266 3137 381 253 182 24 chr1 51136571 51136741 -191527612 + L2 LINE L2 3113 3309 -4 22 70 0 0 chr1 51137283 51137326 -191527027 + AT_rich Low_complexity Low_complexity 1 43 0 1412 169 32 47 chr1 51137361 51137519 -191526834 - AluJo SINE Alu -32 280 126 2408 84 0 0 chr1 51137519 51137817 -191526536 + AluSg SINE Alu 1 298 -12 1412 169 32 47 chr1 51137817 51137936 -191526417 - AluJo SINE Alu -186 126 7 1217 205 72 22 chr1 51138012 51138290 -191526063 + AluJo SINE Alu 1 292 -20 835 172 0 0 chr1 51138290 51138418 -191525935 + FLAM_C SINE Alu 2 129 -4 2138 114 7 10 chr1 51138435 51138733 -191525620 + AluSx SINE Alu 1 297 -15 936 69 12 38 chr1 51138738 51138977 -191525376 + AluY SINE Alu 35 302 -9 1930 86 12 12 chr1 51138977 51139221 -191525132 + AluSp SINE Alu 1 244 -69 1205 112 85 5 chr1 51139245 51139433 -191524920 + AluSq SINE Alu 3 205 -108 1128 147 6 0 chr1 51139444 51139621 -191524732 + AluY SINE Alu 129 306 -5 2482 93 0 3 chr1 51139646 51139958 -191524395 + AluSx SINE Alu 1 311 -1 936 140 33 13 chr1 51140010 51140160 -191524193 - FRAM SINE Alu -31 145 1 716 158 0 42 chr1 51140176 51140296 -191524057 + AluSq/x SINE Alu 2 116 -196 2357 74 0 17 chr1 51140296 51140595 -191523758 - AluY SINE Alu -17 294 1 1314 163 48 78 chr1 51140595 51140792 -191523561 + THE1C LTR MaLR 26 210 -165 7831 78 6 5 chr1 51140792 51141760 -191522593 + LTR5 LTR ERVK 1 969 0 1314 163 48 78 chr1 51141760 51141894 -191522459 + THE1C LTR MaLR 210 347 -28 324 164 33 0 chr1 51141913 51141974 -191522379 + Alu SINE Alu 236 298 -4 1242 137 26 31 chr1 51142050 51142277 -191522076 + THE1B LTR MaLR 1 226 -138 204 125 0 0 chr1 51142317 51142349 -191522004 + (A)n Simple_repeat Simple_repeat 1 32 0 2464 77 0 0 chr1 51142359 51142658 -191521695 + AluY SINE Alu 1 299 -12 1006 84 155 70 chr1 51142658 51142836 -191521517 - MSTA LTR MaLR -34 394 194 1991 113 36 43 chr1 51142836 51143138 -191521215 - AluSg SINE Alu -10 300 1 1006 84 155 70 chr1 51143138 51143172 -191521181 - MSTA LTR MaLR -234 194 164 263 186 0 0 chr1 51143156 51143199 -191521154 - MSTA LTR MaLR -380 48 6 * 26 0 0 0 chr1 51143260 51143286 -191521067 + AT_rich Low_complexity Low_complexity 1 26 0 425 222 46 9 chr1 51143316 51143424 -191520929 + MER66-int LTR ERV1 1383 1494 -6626 2083 126 27 0 chr1 51143437 51143731 -191520622 + AluY SINE Alu 1 302 -9 686 227 74 30 chr1 51143737 51143902 -191520451 + MER66-int LTR ERV1 1623 1779 -6341 1650 186 41 0 chr1 51143902 51144197 -191520156 + AluJo SINE Alu 1 307 -5 686 227 74 30 chr1 51144197 51144234 -191520119 + MER66-int LTR ERV1 1779 1813 -6307 2386 101 0 7 chr1 51144234 51144542 -191519811 + AluSp SINE Alu 1 306 -7 686 227 74 30 chr1 51144542 51144608 -191519745 + MER66-int LTR ERV1 1813 1875 -6245 2324 96 0 10 chr1 51144608 51144911 -191519442 + AluSc SINE Alu 1 300 -9 360 0 0 0 chr1 51144912 51144952 -191519401 + (CA)n Simple_repeat Simple_repeat 2 41 0 686 227 74 30 chr1 51144952 51145018 -191519335 + MER66-int LTR ERV1 1874 1976 -6144 2314 85 0 0 chr1 51145018 51145337 -191519016 - AluY SINE Alu 0 319 1 2200 103 3 3 chr1 51145339 51145631 -191518722 - AluSp SINE Alu -15 298 7 1074 72 0 22 chr1 51145632 51145771 -191518582 - AluY SINE Alu -173 138 3 248 81 0 0 chr1 51145827 51145864 -191518489 - AluSx SINE Alu -8 300 264 1020 143 9 71 chr1 51145866 51146044 -191518309 + MER66-int LTR ERV1 4644 4809 -1867 4205 43 0 4 chr1 51146044 51146536 -191517817 - LTR2B LTR ERV1 0 490 1 23562 118 12 6 chr1 51146536 51150058 -191514295 - Harlequin LTR ERV1 0 6896 3352 1354 51 0 0 chr1 51150057 51150252 -191514101 - Harlequin LTR ERV1 -4322 2574 2380 * 5821 97 1 7 chr1 51150259 51151012 -191513341 + LTR5 LTR ERVK 221 969 0 2430 68 65 11 chr1 51151012 51151394 -191512959 - Harlequin LTR ERV1 -4922 1974 1572 * 5536 92 50 36 chr1 51151380 51151434 -191512919 - Harlequin LTR ERV1 -5996 900 848 2420 64 0 20 chr1 51151434 51151732 -191512621 - AluY SINE Alu -19 292 1 5536 92 50 36 chr1 51151732 51152565 -191511788 - Harlequin LTR ERV1 -6048 848 1 4153 43 4 2 chr1 51152565 51153054 -191511299 - LTR2B LTR ERV1 0 490 1 2640 37 0 0 chr1 51153078 51153372 -191510981 + AluY SINE Alu 1 294 -17 2075 152 0 43 chr1 51153447 51153770 -191510583 + MER65A-int LTR ERV1 6324 6631 -45 1878 151 14 0 chr1 51153770 51154054 -191510299 - AluSx SINE Alu -24 288 1 2075 152 0 43 chr1 51154054 51154098 -191510255 + MER65A-int LTR ERV1 6631 6675 -1 231 256 310 16 chr1 51154153 51154282 -191510071 + MER41B LTR ERV1 174 340 -295 * 1042 189 27 112 chr1 51154258 51154490 -191509863 + MER66A LTR ERV1 169 365 -113 1797 178 0 0 chr1 51154490 51154771 -191509582 + AluJo SINE Alu 11 291 -21 1042 189 27 112 chr1 51154771 51154876 -191509477 + MER66A LTR ERV1 365 477 -1 1027 155 44 129 chr1 51154877 51155096 -191509257 + MER65A LTR ERV1 133 314 -131 2026 152 3 10 chr1 51155096 51155406 -191508947 + AluJb SINE Alu 1 308 -4 1027 155 44 129 chr1 51155406 51155528 -191508825 + MER65A LTR ERV1 314 445 0 666 255 40 50 chr1 51155541 51155742 -191508611 + L1M4 LINE L1 3118 3317 -2829 593 212 217 16 chr1 51155742 51155926 -191508427 - MER58A DNA MER1_type 0 224 4 666 255 40 50 chr1 51155926 51156022 -191508331 + L1M4 LINE L1 3317 3412 -2734 2259 117 7 0 chr1 51156037 51156335 -191508018 + AluSx SINE Alu 1 300 -12 963 158 56 36 chr1 51156393 51156589 -191507764 - MER20 DNA MER1_type -1 218 19 2341 93 7 3 chr1 51156615 51156917 -191507436 + AluSp SINE Alu 1 303 -10 2439 69 10 10 chr1 51156917 51157222 -191507131 + AluY SINE Alu 1 305 -6 1439 126 25 18 chr1 51157224 51157497 -191506856 + L1MA4 LINE L1 6017 6292 -4 2432 17 7 17 chr1 51157497 51157785 -191506568 + AluY SINE Alu 27 311 0 1784 70 0 46 chr1 51157791 51158032 -191506321 + AluSq SINE Alu 84 313 0 2142 227 22 67 chr1 51158032 51158160 -191506193 + L1M4 LINE L1 3604 3736 -2410 2235 63 0 0 chr1 51158160 51158430 -191505923 + AluY SINE Alu 27 296 -15 2142 227 22 67 chr1 51158430 51158488 -191505865 + L1M4 LINE L1 3736 3795 -2351 2195 126 0 0 chr1 51158488 51158782 -191505571 + AluSx SINE Alu 1 294 -18 2142 227 22 67 chr1 51158782 51158894 -191505459 + L1M4 LINE L1 3795 3911 -2235 2139 103 37 0 chr1 51158894 51159194 -191505159 + AluSx SINE Alu 1 311 -1 2142 227 22 67 chr1 51159194 51159668 -191504685 + L1M4 LINE L1 3911 4343 -1803 2149 110 7 0 chr1 51159670 51159960 -191504393 - AluSx SINE Alu -20 292 1 566 63 0 13 chr1 51159965 51160044 -191504309 + Charlie1 DNA MER1_type 1854 1931 -830 265 254 0 0 chr1 51160118 51160185 -191504168 + MER69 DNA AcHobo 2448 2514 -12 183 297 18 63 chr1 51160209 51160320 -191504033 - L2 LINE L2 -583 2731 2626 1516 106 31 0 chr1 51160330 51160556 -191503797 - MER41A LTR ERV1 0 554 322 2544 43 20 0 chr1 51160558 51160858 -191503495 - AluY SINE Alu -5 306 1 279 170 0 0 chr1 51160859 51160906 -191503447 - MER69 DNA AcHobo -2479 47 1 205 314 154 30 chr1 51160909 51161078 -191503275 + L2 LINE L2 2905 3094 -178 216 265 29 0 chr1 51161707 51161775 -191502578 + CT-rich Low_complexity Low_complexity 1 70 0 674 292 24 32 chr1 51165732 51165990 -191498363 - MIR SINE MIR -1 261 1 204 212 374 20 chr1 51166343 51166364 -191497989 - L2 LINE L2 0 3313 3301 2397 96 0 3 chr1 51166364 51166667 -191497686 + AluSx SINE Alu 1 302 -10 204 212 374 20 chr1 51166667 51166744 -191497609 - L2 LINE L2 -12 3301 3180 1131 131 6 18 chr1 51166745 51166764 -191497589 + AluSq SINE Alu 116 134 -179 2437 88 0 7 chr1 51166764 51167071 -191497282 + AluSx SINE Alu 1 305 -7 1131 131 6 18 chr1 51167071 51167219 -191497134 + AluSq SINE Alu 134 281 -32 2165 129 0 0 chr1 51167652 51167954 -191496399 + AluSx SINE Alu 1 302 -10 2462 83 0 10 chr1 51168362 51168676 -191495677 - AluY SINE Alu 0 311 1 2265 92 16 3 chr1 51168927 51169233 -191495120 + AluSq SINE Alu 1 310 -3 2163 112 10 0 chr1 51169305 51169609 -191494744 - AluSq SINE Alu -6 307 1 2405 67 0 10 chr1 51169622 51169935 -191494418 - AluY SINE Alu 0 311 2 389 361 89 0 chr1 51170511 51170680 -191493673 - MIR3 SINE MIR -8 200 17 724 128 30 45 chr1 51170744 51170877 -191493476 + FLAM_C SINE Alu 1 131 -2 455 208 59 0 chr1 51171020 51171121 -191493232 + Charlie8 DNA MER1_type 295 401 -2016 517 250 75 19 chr1 51171126 51171286 -191493067 - MLT1J LTR MaLR -6 505 337 801 216 46 113 chr1 51171371 51171580 -191492773 - MLT1J LTR MaLR -202 309 128 2218 51 7 0 chr1 51171580 51171854 -191492499 + AluSp SINE Alu 1 276 -37 801 216 46 113 chr1 51171854 51171973 -191492380 - MLT1J LTR MaLR -383 128 3 240 212 106 0 chr1 51171974 51172040 -191492313 + Charlie8 DNA MER1_type 399 471 -1946 749 165 0 0 chr1 51172041 51172156 -191492197 + AluJo/FLAM SINE Alu 2 116 -196 2391 69 0 0 chr1 51172156 51172460 -191491893 - AluY SINE Alu -7 304 1 23 0 0 0 chr1 51172470 51172493 -191491860 + AT_rich Low_complexity Low_complexity 1 23 0 808 144 23 23 chr1 51172493 51172625 -191491728 - AluJo SINE Alu -178 134 3 2060 132 0 3 chr1 51172665 51172968 -191491385 + AluSx SINE Alu 1 302 -10 267 176 65 39 chr1 51172968 51173121 -191491232 + GA-rich Low_complexity Low_complexity 2 158 0 2290 60 10 10 chr1 51173971 51174273 -191490080 - AluSq SINE Alu -11 302 1 229 176 0 88 chr1 51174273 51174341 -191490012 - L1MC/D LINE L1 -1892 5916 5855 407 261 180 9 chr1 51174371 51174593 -191489760 - L1MC/D LINE L1 -2171 5637 5378 1765 134 27 20 chr1 51174596 51174895 -191489458 - AluJb SINE Alu -11 301 1 21 36 0 0 chr1 51174907 51174935 -191489418 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 51174973 51174994 -191489359 + AT_rich Low_complexity Low_complexity 1 21 0 2070 92 6 50 chr1 51175150 51175467 -191488886 - AluSq SINE Alu -10 303 1 596 306 86 5 chr1 51175491 51175700 -191488653 + MIR SINE MIR 2 227 -35 256 245 206 0 chr1 51175732 51175834 -191488519 - L3 LINE CR1 -103 1474 1352 865 249 96 22 chr1 51175837 51176066 -191488287 + MIR SINE MIR 1 246 -16 268 269 75 32 chr1 51176100 51176193 -191488160 - L3 LINE CR1 -232 1345 1249 2334 74 3 0 chr1 51176229 51176526 -191487827 + AluSq SINE Alu 1 298 -15 1939 155 3 0 chr1 51176570 51176867 -191487486 - AluJb SINE Alu -14 298 1 2289 71 7 3 chr1 51176907 51177217 -191487136 + AluY SINE Alu 1 311 0 1553 149 0 15 chr1 51177680 51177941 -191486412 - AluJb SINE Alu -17 295 39 366 285 99 13 chr1 51178201 51178352 -191486001 - L1M4 LINE L1 -3812 2334 2171 1096 127 12 0 chr1 51178412 51178578 -191485775 - AluSg/x SINE Alu -11 301 134 2232 76 0 7 chr1 51178578 51178892 -191485461 - AluSx SINE Alu 0 312 1 2296 93 0 0 chr1 51178895 51179195 -191485158 - AluSc SINE Alu -8 301 2 369 123 46 0 chr1 51179351 51179416 -191484937 + HY1 scRNA scRNA 34 101 -11 2033 134 0 7 chr1 51179472 51179777 -191484576 + AluSx SINE Alu 1 303 -9 906 167 0 30 chr1 51179876 51180044 -191484309 - FRAM SINE Alu -3 163 1 1328 103 0 0 chr1 51180048 51180232 -191484121 - AluSg/x SINE Alu -13 299 116 449 128 47 70 chr1 51180232 51180318 -191484035 - AluJo SINE Alu -143 169 86 235 167 121 15 chr1 51180321 51180387 -191483966 - L1ME3A LINE L1 -4 6166 6094 1112 170 9 36 chr1 51180395 51180444 -191483909 + AluJo SINE Alu 87 136 -176 2471 60 0 0 chr1 51180444 51180746 -191483607 + AluY SINE Alu 1 302 -9 258 32 0 0 chr1 51180746 51180777 -191483576 + (TA)n Simple_repeat Simple_repeat 1 31 0 1112 170 9 36 chr1 51180777 51180950 -191483403 + AluJo SINE Alu 134 304 -8 272 342 27 9 chr1 51180967 51181078 -191483275 - L3 LINE CR1 -1023 554 442 1155 142 0 0 chr1 51181492 51181668 -191482685 + AluSg/x SINE Alu 130 305 -5 23 33 0 0 chr1 51183465 51183495 -191480858 + AT_rich Low_complexity Low_complexity 1 30 0 1046 276 45 14 chr1 51184028 51184386 -191479967 + L1ME3 LINE L1 5561 5929 -233 288 276 52 0 chr1 51184394 51184510 -191479843 - L1ME1 LINE L1 0 6166 6045 1742 133 0 87 chr1 51184518 51184850 -191479503 + AluJo SINE Alu 1 303 -9 1695 137 29 11 chr1 51184891 51185194 -191479159 + AluSx SINE Alu 1 308 0 2388 202 17 26 chr1 51185574 51185830 -191478523 - L1ME1 LINE L1 -243 5923 5666 2191 110 3 7 chr1 51185830 51186138 -191478215 - AluSq SINE Alu -6 307 1 2388 202 17 26 chr1 51186138 51186342 -191478011 - L1ME1 LINE L1 -500 5666 5466 2018 141 0 0 chr1 51186342 51186646 -191477707 + AluSx SINE Alu 1 304 -8 2388 202 17 26 chr1 51186646 51186719 -191477634 - L1ME1 LINE L1 -700 5466 5394 1044 70 0 0 chr1 51187078 51187206 -191477147 + AluSq/x SINE Alu 6 133 -179 180 0 0 0 chr1 51187206 51187226 -191477127 + (A)n Simple_repeat Simple_repeat 1 20 0 755 152 228 6 chr1 51188016 51188174 -191476179 - MER66A LTR ERV1 -3 475 283 238 243 57 0 chr1 51188178 51188248 -191476105 - MIR SINE MIR -105 157 84 2057 118 10 0 chr1 51188256 51188561 -191475792 - AluJb SINE Alu -4 308 1 1123 208 55 14 chr1 51188758 51189171 -191475182 + MLT1H LTR MaLR 24 521 -28 21 0 0 0 chr1 51189174 51189195 -191475158 + AT_rich Low_complexity Low_complexity 1 21 0 798 171 0 0 chr1 51189268 51189391 -191474962 + FLAM_C SINE Alu 2 124 -19 281 311 150 56 chr1 51189543 51189849 -191474504 + L2 LINE L2 2924 3258 -14 * 421 330 71 65 chr1 51189847 51190389 -191473964 - L2 LINE L2 -25 3247 2709 631 314 85 14 chr1 51190550 51190843 -191473510 + L3 LINE CR1 1091 1404 -173 476 293 7 20 chr1 51190893 51191040 -191473313 + MLT1I LTR MaLR 1 145 -264 613 175 49 35 chr1 51191436 51191579 -191472774 - MIR SINE MIR -50 212 68 1936 99 34 17 chr1 51191632 51191791 -191472562 - AluSg SINE Alu -11 299 131 2333 84 0 3 chr1 51191791 51192102 -191472251 - AluY SINE Alu -1 310 1 1936 99 34 17 chr1 51192102 51192236 -191472117 - AluSg SINE Alu -179 131 1 1586 178 7 41 chr1 51192236 51192529 -191471824 - MSTB LTR MaLR -143 283 1 2690 220 36 53 chr1 51192529 51192631 -191471722 - MSTC-int LTR MaLR -1027 708 606 2235 91 0 10 chr1 51192631 51192939 -191471414 - AluY SINE Alu -6 305 1 2690 220 36 53 chr1 51192939 51193205 -191471148 - MSTC-int LTR MaLR -1129 606 337 1966 124 11 0 chr1 51193205 51193517 -191470836 - AluSx SINE Alu 0 315 1 2690 220 36 53 chr1 51193517 51193864 -191470489 - MSTC-int LTR MaLR -1398 337 2 2278 131 6 116 chr1 51193866 51194347 -191470006 - MSTC LTR MaLR 0 428 1 800 106 29 158 chr1 51194351 51194501 -191469852 + L1MA8 LINE L1 5929 6097 -194 2262 97 3 0 chr1 51194501 51194810 -191469543 + AluSp SINE Alu 1 310 -3 800 106 29 158 chr1 51194810 51194824 -191469529 + L1MA8 LINE L1 6097 6111 -180 2058 125 0 10 chr1 51194824 51195137 -191469216 + AluSg SINE Alu 1 310 0 800 106 29 158 chr1 51195137 51195217 -191469136 + L1MA8 LINE L1 6111 6142 -149 728 128 0 146 chr1 51195238 51195402 -191468951 + FRAM SINE Alu 25 164 -12 592 140 140 0 chr1 51195402 51195538 -191468815 + L1MA8 LINE L1 6132 6286 -5 290 204 93 133 chr1 51195564 51195650 -191468703 + L1M4 LINE L1 3203 3291 -2855 2105 118 3 0 chr1 51195650 51195947 -191468406 + AluSp SINE Alu 1 298 -15 1800 175 0 10 chr1 51195948 51196262 -191468091 + AluJb SINE Alu 1 311 -1 290 204 93 133 chr1 51196262 51196321 -191468032 + L1M4 LINE L1 3291 3351 -2795 2298 60 37 0 chr1 51196321 51196620 -191467733 + AluSp SINE Alu 1 310 -3 1847 139 3 7 chr1 51196622 51196917 -191467436 + AluSx SINE Alu 1 294 -18 290 204 93 133 chr1 51196917 51197035 -191467318 + L1M4 LINE L1 3352 3461 -2685 344 192 77 0 chr1 51197125 51197203 -191467150 - MER112 DNA MER1_type -90 170 87 297 0 0 0 chr1 51197209 51197242 -191467111 + (TG)n Simple_repeat Simple_repeat 2 34 0 2034 127 3 0 chr1 51197262 51197553 -191466800 - AluSx SINE Alu -20 292 1 2135 123 0 0 chr1 51197553 51197846 -191466507 - AluSx SINE Alu -19 293 1 630 235 53 18 chr1 51198214 51198384 -191465969 - MIR SINE MIR -21 241 66 822 102 55 24 chr1 51198561 51198688 -191465665 - FLAM_C SINE Alu -2 131 1 1915 136 14 0 chr1 51198698 51198993 -191465360 - AluSx SINE Alu -13 299 1 245 308 46 39 chr1 51198993 51199114 -191465239 + MIR SINE MIR 22 146 -62 1686 218 113 30 chr1 51199123 51199628 -191464725 - MLT1H LTR MaLR 0 549 3 1440 204 8 79 chr1 51199788 51199831 -191464522 - MLT1A1 LTR MaLR 0 365 321 2022 117 0 3 chr1 51199831 51200113 -191464240 + AluSc SINE Alu 1 283 -26 213 65 0 0 chr1 51200113 51200144 -191464209 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 1440 204 8 79 chr1 51200152 51200501 -191463852 - MLT1A1 LTR MaLR -44 321 1 1148 235 21 8 chr1 51201058 51201296 -191463057 - MIR SINE MIR -6 256 16 575 278 103 68 chr1 51201358 51201610 -191462743 - MIR SINE MIR 0 262 2 201 190 172 17 chr1 51201770 51201828 -191462525 + L2 LINE L2 3202 3268 -4 257 304 25 13 chr1 51202204 51202283 -191462070 - MIR SINE MIR -92 116 37 252 158 18 35 chr1 51202556 51202613 -191461740 - L2 LINE L2 -1 3271 3216 22 35 0 0 chr1 51202993 51203022 -191461331 + AT_rich Low_complexity Low_complexity 1 29 0 358 248 16 58 chr1 51203040 51203100 -191461253 + MIR SINE MIR 96 150 -112 2096 121 7 0 chr1 51203100 51203398 -191460955 - AluSx SINE Alu -12 300 1 358 248 16 58 chr1 51203398 51203458 -191460895 + MIR SINE MIR 150 211 -51 2580 39 0 0 chr1 51203945 51204251 -191460102 - AluY SINE Alu -5 306 1 2011 139 175 47 chr1 51204258 51204745 -191459608 - LTR10A LTR ERV1 0 609 12 1473 234 11 25 chr1 51204754 51205117 -191459236 - LTR10A-int LTR ERV1 -2 6647 6290 * 7729 112 16 1 chr1 51205116 51206279 -191458074 - HERV17 LTR ERV1 -3910 2986 1806 2755 46 3 0 chr1 51206278 51206601 -191457752 - LTR17 LTR ERV1 -456 324 1 * 2348 71 3 0 chr1 51206605 51206901 -191457452 - HERV17 LTR ERV1 -5 8621 6836 250 154 0 0 chr1 51206881 51206920 -191457433 - HERV17 LTR ERV1 -1078 7548 7510 * 34939 45 2 4 chr1 51206915 51209653 -191454700 - HERV17 LTR ERV1 -2609 6017 3287 2261 83 3 13 chr1 51209653 51209955 -191454398 - AluY SINE Alu -12 299 1 34939 45 2 4 chr1 51209955 51211288 -191453065 - HERV17 LTR ERV1 -5339 3287 1953 283 143 0 0 chr1 51211276 51211318 -191453035 - HERV17 LTR ERV1 -8583 43 2 * 3238 63 61 0 chr1 51211318 51211730 -191452623 - LTR17 LTR ERV1 0 780 344 232 235 69 29 chr1 51211730 51211832 -191452521 - MER61E LTR ERV1 -98 471 366 5830 94 4 36 chr1 51211839 51212718 -191451635 - LTR10A-int LTR ERV1 -5210 1686 792 2348 58 0 3 chr1 51212718 51213010 -191451343 - AluY SINE Alu -20 291 1 5830 94 4 36 chr1 51213010 51213098 -191451255 - LTR10A-int LTR ERV1 -6104 792 703 287 176 132 77 chr1 51213161 51213252 -191451101 - LTR10A-int LTR ERV1 -5579 1070 975 993 231 86 115 chr1 51213289 51213977 -191450376 - LTR10A-int LTR ERV1 -5954 695 28 1689 179 113 39 chr1 51213989 51214471 -191449882 - LTR10A LTR ERV1 -35 574 1 197 327 55 42 chr1 51215377 51215424 -191448929 - MIR3 SINE MIR -6 202 157 2083 88 26 3 chr1 51215424 51215729 -191448624 - AluSx SINE Alu 0 312 1 197 327 55 42 chr1 51215729 51215846 -191448507 - MIR3 SINE MIR -51 157 36 220 150 33 67 chr1 51216230 51216290 -191448063 - MIR SINE MIR -129 79 22 4402 160 34 47 chr1 51216372 51217339 -191447014 - LTR5 LTR ERVK -14 955 1 2372 71 0 3 chr1 51218049 51218359 -191445994 - AluSx SINE Alu -3 309 1 429 145 29 0 chr1 51218360 51218429 -191445924 - AluSq/x SINE Alu -168 145 75 2184 99 3 3 chr1 51218427 51218731 -191445622 - AluSq SINE Alu -9 304 1 2216 91 0 3 chr1 51219033 51219329 -191445024 - AluSx SINE Alu -15 297 3 273 224 15 0 chr1 51220240 51220307 -191444046 + L1MC4a LINE L1 5866 5933 -1875 521 176 27 43 chr1 51221325 51221670 -191442683 + G-rich Low_complexity Low_complexity 1 339 0 187 341 98 0 chr1 51221754 51221836 -191442517 + L2 LINE L2 2956 3045 -268 673 91 0 0 chr1 51221837 51221925 -191442428 + pTR5 LTR ERV1 305 392 -2046 200 208 75 38 chr1 51222117 51222170 -191442183 + MIR SINE MIR 107 161 -101 867 169 0 0 chr1 51222261 51222391 -191441962 + FLAM_A SINE Alu 1 130 -3 205 161 0 0 chr1 51222881 51222912 -191441441 + (TG)n Simple_repeat Simple_repeat 1 31 0 2062 88 6 82 chr1 51223014 51223191 -191441162 - AluSq SINE Alu -18 295 151 2162 117 0 0 chr1 51223191 51223489 -191440864 - AluSx SINE Alu -14 298 1 2062 88 6 82 chr1 51223489 51223630 -191440723 - AluSq SINE Alu -162 151 1 1653 108 131 4 chr1 51223633 51223893 -191440460 - AluSx SINE Alu -19 293 1 200 339 103 63 chr1 51224123 51224424 -191439929 + L2 LINE L2 2951 3263 -9 194 109 65 43 chr1 51226321 51226367 -191437986 + MIR SINE MIR 78 124 -84 2280 39 3 72 chr1 51227067 51227401 -191436952 - AluY SINE Alu 0 311 1 662 204 135 83 chr1 51227631 51227935 -191436418 - MER110A LTR ERV1 0 468 177 353 153 56 0 chr1 51228226 51228298 -191436055 - MER110A LTR ERV1 -368 100 25 282 258 20 133 chr1 51228612 51228763 -191435590 + MIR SINE MIR 14 147 -115 293 329 39 32 chr1 51230006 51230161 -191434192 + MIR3 SINE MIR 38 193 -15 203 295 152 0 chr1 51231867 51231972 -191432381 + MIR3 SINE MIR 36 156 -52 193 309 0 0 chr1 51232892 51232947 -191431406 + L3 LINE CR1 1412 1466 -111 1943 138 10 3 chr1 51233025 51233329 -191431024 + AluJo SINE Alu 1 306 -6 235 296 114 23 chr1 51234987 51235119 -191429234 - L2 LINE L2 -208 3064 2921 2091 73 9 76 chr1 51235494 51235822 -191428531 - AluSp SINE Alu -7 306 1 561 288 41 6 chr1 51236530 51236700 -191427653 + L2 LINE L2 2539 2714 -600 1166 136 5 11 chr1 51236700 51236884 -191427469 + AluSx SINE Alu 1 183 -129 1197 119 0 0 chr1 51236939 51237107 -191427246 - AluSc SINE Alu -9 300 133 2159 93 0 17 chr1 51237108 51237409 -191426944 - AluSg SINE Alu -14 296 1 226 352 0 0 chr1 51237412 51237483 -191426870 + L2 LINE L2 2898 2968 -346 1924 138 27 0 chr1 51237544 51237842 -191426511 - AluSg SINE Alu -1 309 4 2025 96 58 0 chr1 51237854 51238147 -191426206 - AluSg SINE Alu 0 310 1 2344 90 3 0 chr1 51238173 51238485 -191425868 - AluSp SINE Alu 0 313 1 247 323 75 11 chr1 51238534 51238627 -191425726 + L2 LINE L2 3137 3235 -37 324 244 64 0 chr1 51238662 51238740 -191425613 - L2 LINE L2 -44 3228 3146 478 249 166 10 chr1 51238850 51239043 -191425310 - MIR SINE MIR 0 262 40 2272 88 3 0 chr1 51239215 51239512 -191424841 - AluSp SINE Alu -15 298 1 345 311 52 21 chr1 51239611 51239854 -191424499 + L2 LINE L2 2759 3006 -266 1980 104 18 0 chr1 51240033 51240333 -191424020 - AluSx SINE Alu 0 305 1 1991 131 0 7 chr1 51240333 51240638 -191423715 - AluSx SINE Alu -9 303 1 268 345 43 9 chr1 51240639 51240755 -191423598 - MIR SINE MIR -111 151 32 262 271 47 28 chr1 51241048 51241155 -191423198 - L3 LINE CR1 -853 724 616 305 292 0 0 chr1 51241334 51241406 -191422947 + L2 LINE L2 3201 3272 0 2006 106 0 4 chr1 51241536 51241811 -191422542 - AluSx SINE Alu -10 302 29 216 222 0 0 chr1 51242061 51242106 -191422247 - MIR SINE MIR -110 152 108 261 323 64 36 chr1 51242202 51242422 -191421931 - L2 LINE L2 -78 3235 3010 262 336 67 9 chr1 51242430 51242728 -191421625 - L2 LINE L2 -1289 2025 1645 180 261 22 0 chr1 51242781 51242827 -191421526 - L2 LINE L2 0 3313 3267 772 146 100 15 chr1 51242868 51242998 -191421355 - AluJo SINE Alu -170 142 2 232 356 34 34 chr1 51243001 51243147 -191421206 - L2 LINE L2 -93 3220 3075 196 305 90 42 chr1 51244659 51244826 -191419527 + L2 LINE L2 3089 3263 -9 233 267 57 9 chr1 51245213 51245318 -191419035 + MIR3 SINE MIR 77 186 -22 2103 102 0 3 chr1 51246819 51247112 -191417241 - AluSc SINE Alu -17 292 1 2319 79 16 0 chr1 51247335 51247639 -191416714 - AluSp SINE Alu -4 309 1 1940 108 29 33 chr1 51247639 51247946 -191416407 - AluSq SINE Alu -3 310 5 608 291 81 5 chr1 51250742 51250965 -191413388 + MIR SINE MIR 2 241 -21 2111 100 0 60 chr1 51251832 51251983 -191412370 + AluSx SINE Alu 1 125 -187 1938 120 28 3 chr1 51251983 51252274 -191412079 + AluSx SINE Alu 3 300 -12 2111 100 0 60 chr1 51252274 51252441 -191411912 + AluSx SINE Alu 125 300 -12 189 0 0 0 chr1 51253491 51253512 -191410841 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 228 222 93 125 chr1 51255150 51255502 -191408851 - L2 LINE L2 -37 3235 2804 222 286 206 24 chr1 51255481 51255607 -191408746 - MIR3 SINE MIR -24 184 36 * 273 295 194 40 chr1 51256581 51256808 -191407545 - L2 LINE L2 -542 2772 2511 245 332 207 18 chr1 51257025 51257426 -191406927 - L2 LINE L2 -598 2716 2240 257 306 198 33 chr1 51257549 51257974 -191406379 - L2 LINE L2 -1392 1922 1428 2248 92 0 0 chr1 51258009 51258302 -191406051 - AluSx SINE Alu -19 293 1 207 329 116 48 chr1 51258312 51258458 -191405895 - L2 LINE L2 -975 2339 2184 1888 157 7 0 chr1 51263053 51263358 -191400995 - AluJo SINE Alu -5 307 1 881 191 79 23 chr1 51264045 51264260 -191400093 - MIR SINE MIR -2 260 34 243 0 0 0 chr1 51264602 51264629 -191399724 + (T)n Simple_repeat Simple_repeat 1 27 0 2241 119 0 0 chr1 51266138 51266450 -191397903 + AluSx SINE Alu 1 312 0 431 272 63 121 chr1 51266559 51266774 -191397579 + L2 LINE L2 2960 3147 -166 2064 121 0 0 chr1 51266774 51267063 -191397290 - AluSx SINE Alu -23 289 1 431 272 63 121 chr1 51267063 51267211 -191397142 + L2 LINE L2 3147 3302 -11 25 0 0 0 chr1 51268786 51268811 -191395542 + AT_rich Low_complexity Low_complexity 1 25 0 2382 92 0 3 chr1 51268820 51269123 -191395230 + AluSq SINE Alu 1 302 -11 2382 97 0 0 chr1 51269265 51269564 -191394789 + AluSq SINE Alu 1 299 -14 240 120 6 17 chr1 51269592 51269642 -191394711 + L1P5 LINE L1 5521 5568 -583 2623 176 40 13 chr1 51269651 51270203 -191394150 + L1MB8 LINE L1 5609 6175 -3 2401 96 0 0 chr1 51270242 51270543 -191393810 - AluSx SINE Alu -11 301 1 1598 128 50 34 chr1 51270707 51270872 -191393481 - MER44D DNA MER2_type -1884 607 446 2189 62 0 11 chr1 51270872 51271144 -191393209 + AluY SINE Alu 35 303 -8 1598 128 50 34 chr1 51271144 51271298 -191393055 - MER44D DNA MER2_type -2045 446 13 816 215 56 0 chr1 51271464 51271697 -191392656 - L1ME3 LINE L1 -7 6155 5910 255 172 23 35 chr1 51272213 51272308 -191392045 + (TTG)n Simple_repeat Simple_repeat 1 93 0 2059 152 28 25 chr1 51272381 51272742 -191391611 + MLT1A1 LTR MaLR 4 365 0 2196 142 0 7 chr1 51273093 51273403 -191390950 + AluSx SINE Alu 1 308 -4 1483 83 34 5 chr1 51273886 51274090 -191390263 - AluSq SINE Alu -8 305 96 * 2272 96 3 10 chr1 51274088 51274391 -191389962 - AluSx SINE Alu -11 301 1 2353 101 0 0 chr1 51275034 51275330 -191389023 - AluSx SINE Alu -14 298 3 916 283 102 55 chr1 51275351 51275804 -191388549 + MLT1K LTR MaLR 2 475 -113 840 251 26 67 chr1 51275837 51275974 -191388379 + MIR SINE MIR 3 144 -118 2003 137 16 46 chr1 51275974 51276346 -191388007 + THE1B LTR MaLR 1 361 -3 12075 80 12 0 chr1 51276349 51277910 -191386443 + THE1B-int LTR MaLR 1 1580 0 1971 134 11 62 chr1 51277910 51278284 -191386069 + THE1A LTR MaLR 1 355 0 840 251 26 67 chr1 51278284 51278408 -191385945 + MIR SINE MIR 144 258 -4 1487 143 90 19 chr1 51278531 51278797 -191385556 + AluJo SINE Alu 18 302 -10 2334 98 0 0 chr1 51278799 51279104 -191385249 + AluSx SINE Alu 1 305 -7 1956 111 18 7 chr1 51279187 51279489 -191384864 + AluSq SINE Alu 1 305 0 434 274 232 0 chr1 51279493 51279657 -191384696 - MIR SINE MIR -12 250 49 201 314 35 12 chr1 51279886 51279972 -191384381 + L2 LINE L2 1836 1923 -1391 381 314 190 43 chr1 51279975 51280443 -191383910 + L2 LINE L2 2156 2692 -622 599 340 72 25 chr1 51280447 51280765 -191383588 - L2 LINE L2 -4 3268 2936 2340 97 3 0 chr1 51281275 51281575 -191382778 + AluSx SINE Alu 1 301 -11 486 227 10 0 chr1 51281840 51281937 -191382416 - FLAM_A SINE Alu -44 98 1 205 254 0 36 chr1 51282147 51282202 -191382151 - L2 LINE L2 -226 3046 2994 2132 137 0 31 chr1 51282917 51283239 -191381114 + AluSx SINE Alu 1 312 0 2327 83 0 0 chr1 51283246 51283535 -191380818 + AluSx SINE Alu 1 289 -23 753 221 133 5 chr1 51283560 51283945 -191380408 + L1M4 LINE L1 2750 3183 -2963 1081 235 127 61 chr1 51284393 51284865 -191379488 + MLT1J LTR MaLR 9 511 0 1417 175 126 0 chr1 51285527 51285790 -191378563 + AluJo SINE Alu 3 298 -4 279 0 0 0 chr1 51286241 51286272 -191378081 + (TA)n Simple_repeat Simple_repeat 2 32 0 5798 270 74 44 chr1 51287279 51288231 -191376122 - L2 LINE L2 0 3313 2391 2186 117 3 0 chr1 51288231 51288529 -191375824 + AluSx SINE Alu 1 299 -13 5798 270 74 44 chr1 51288529 51289830 -191374523 - L2 LINE L2 -922 2391 988 298 226 65 32 chr1 51289813 51289906 -191374447 + L2 LINE L2 3169 3264 -8 * 23 0 0 0 chr1 51290243 51290266 -191374087 + AT_rich Low_complexity Low_complexity 1 23 0 2331 86 10 7 chr1 51290414 51290718 -191373635 + AluSx SINE Alu 8 312 0 234 0 0 0 chr1 51290735 51290761 -191373592 + (GA)n Simple_repeat Simple_repeat 2 27 0 204 314 76 43 chr1 51290885 51291095 -191373258 + L2 LINE L2 2827 3043 -229 185 333 0 0 chr1 51291349 51291397 -191372956 + L2 LINE L2 3004 3051 -221 180 345 73 0 chr1 51291429 51291484 -191372869 - L2 LINE L2 -3 3310 3252 431 148 12 0 chr1 51291513 51291594 -191372759 + L1MB3 LINE L1 5749 5830 -353 1475 139 77 29 chr1 51291669 51291943 -191372410 + AluJo SINE Alu 1 287 -25 186 71 0 0 chr1 51291948 51291976 -191372377 + (TA)n Simple_repeat Simple_repeat 2 29 0 318 311 48 10 chr1 51291992 51292095 -191372258 - L2 LINE L2 -27 3286 3180 6975 205 58 23 chr1 51292145 51292621 -191371732 - ERVL-B3 LTR ERVL -4121 1643 1185 2109 97 3 52 chr1 51292621 51292930 -191371423 - AluSg SINE Alu -16 294 1 6975 205 58 23 chr1 51292930 51293004 -191371349 - ERVL-B3 LTR ERVL -4579 1185 1115 2516 49 10 3 chr1 51293004 51293311 -191371042 + AluY SINE Alu 1 309 -2 6975 205 58 23 chr1 51293311 51294325 -191370028 - ERVL-B3 LTR ERVL -4649 1115 24 1890 142 7 26 chr1 51294326 51294628 -191369725 + AluJo SINE Alu 1 296 -16 2829 126 87 45 chr1 51294663 51295195 -191369158 - MLT2B3 LTR ERVL 0 554 1 631 231 311 14 chr1 51295199 51295485 -191368868 - L2 LINE L2 -1105 2209 1839 909 213 6 11 chr1 51295668 51295851 -191368502 + MIR SINE MIR 37 218 -44 2057 118 3 17 chr1 51297248 51297545 -191366808 + AluSx SINE Alu 1 293 -19 2505 138 56 26 chr1 51297570 51298071 -191366282 + L1MB3 LINE L1 5588 6103 -80 278 298 18 53 chr1 51298381 51298495 -191365858 + MER5A DNA MER1_type 4 113 -76 2301 109 0 0 chr1 51298663 51298957 -191365396 + AluSx SINE Alu 1 294 -18 2025 116 3 19 chr1 51299045 51299356 -191364997 - AluSx SINE Alu -6 306 1 798 179 46 20 chr1 51299403 51299554 -191364799 - FRAM SINE Alu -11 155 1 581 196 32 2 chr1 51300056 51300197 -191364156 + L1MA9 LINE L1 6066 6218 -82 2406 225 129 22 chr1 51300204 51300335 -191364018 + L1MC4 LINE L1 6535 6651 -1157 1561 150 112 38 chr1 51300335 51300649 -191363704 + MER1B DNA MER1_type 1 337 0 2406 225 129 22 chr1 51300649 51300992 -191363361 + L1MC4 LINE L1 6651 6956 -852 225 0 0 0 chr1 51300992 51301017 -191363336 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2406 225 129 22 chr1 51301017 51301642 -191362711 + L1MC4 LINE L1 6956 7713 -95 2181 103 3 44 chr1 51301777 51302097 -191362256 + AluSx SINE Alu 1 307 -5 4513 151 47 34 chr1 51302103 51303424 -191360929 + L1MB8 LINE L1 4845 6169 -9 229 287 119 50 chr1 51304277 51304378 -191359975 - L2 LINE L2 -14 3299 3192 753 141 8 8 chr1 51304916 51305037 -191359316 - FLAM_C SINE Alu -22 121 1 810 188 0 0 chr1 51305306 51305434 -191358919 + FAM SINE Alu 1 128 -57 2022 107 7 0 chr1 51305435 51305705 -191358648 + AluSx SINE Alu 22 293 -19 471 319 16 28 chr1 51305706 51305954 -191358399 + HAL1 LINE L1 244 488 -2019 227 0 0 0 chr1 51305954 51305981 -191358372 - L1PA5 LINE L1 -299 5856 5830 2224 65 3 3 chr1 51305981 51306273 -191358080 + L1PA5 LINE L1 5861 6152 -2 432 256 58 95 chr1 51306327 51306596 -191357757 + HAL1 LINE L1 468 723 -1784 860 128 8 15 chr1 51306596 51306729 -191357624 - FLAM_C SINE Alu 0 133 2 432 256 58 95 chr1 51306729 51306806 -191357547 + HAL1 LINE L1 723 801 -1706 * 1617 150 13 13 chr1 51306790 51307097 -191357256 + L1MB3 LINE L1 5834 6140 -43 806 196 0 0 chr1 51307099 51307232 -191357121 + FLAM_C SINE Alu 1 133 -10 238 94 19 19 chr1 51307251 51307304 -191357049 + L1MB3 LINE L1 6128 6180 -3 3261 229 122 37 chr1 51307312 51308430 -191355923 + HAL1 LINE L1 850 2134 -373 2343 103 0 0 chr1 51308430 51308731 -191355622 + AluY SINE Alu 1 301 -10 3261 229 122 37 chr1 51308731 51309140 -191355213 + HAL1 LINE L1 2134 2507 0 204 295 128 39 chr1 51309141 51309219 -191355134 + MIR SINE MIR 44 128 -80 1351 201 76 46 chr1 51309220 51309309 -191355044 - MER63 DNA MER1_type -3 1058 973 1976 117 7 11 chr1 51309309 51309629 -191354724 - AluSg SINE Alu 0 319 1 1351 201 76 46 chr1 51309629 51309932 -191354421 - MER63 DNA MER1_type -88 973 653 747 165 0 23 chr1 51309994 51310127 -191354226 - FLAM_A SINE Alu -3 130 1 2367 109 0 0 chr1 51310135 51310437 -191353916 - AluSx SINE Alu -10 302 1 276 30 0 0 chr1 51310464 51310497 -191353856 + (CA)n Simple_repeat Simple_repeat 2 34 0 390 145 0 0 chr1 51310508 51310570 -191353783 + MER58 DNA MER1_type 2346 2407 -13 1194 191 71 54 chr1 51310707 51311043 -191353310 + MER2 DNA MER2_type 2 343 -2 356 207 0 0 chr1 51311089 51311171 -191353182 + L1MC3 LINE L1 6082 6163 -1622 318 330 8 34 chr1 51311200 51311318 -191353035 - MER5B DNA MER1_type -61 117 3 272 316 124 53 chr1 51311319 51311348 -191353005 + L2 LINE L2 837 862 -2452 2231 78 0 3 chr1 51311348 51311659 -191352694 - AluSg SINE Alu 0 310 1 272 316 124 53 chr1 51311659 51312103 -191352250 + L2 LINE L2 862 1345 -1969 1604 129 133 11 chr1 51312604 51312868 -191351485 + AluSg1 SINE Alu 1 296 -13 1378 157 0 0 chr1 51312868 51313078 -191351275 + AluJo SINE Alu 86 295 -17 4259 74 21 43 chr1 51314043 51314675 -191349678 + L1PA11 LINE L1 5552 6169 -5 867 168 0 0 chr1 51314949 51315080 -191349273 - FLAM_C SINE Alu -11 132 2 211 213 254 33 chr1 51315290 51315412 -191348941 + MIR3 SINE MIR 60 208 0 1039 142 8 2 chr1 51315614 51315867 -191348486 + AluSx SINE Alu 1 309 -1 1329 166 12 55 chr1 51315916 51316259 -191348094 + L1MD2 LINE L1 3614 3941 -2205 769 182 8 0 chr1 51316261 51316393 -191347960 + AluJb SINE Alu 3 135 -177 1318 203 72 37 chr1 51316395 51316603 -191347750 + L1MD2 LINE L1 3928 4127 -2019 2452 76 0 3 chr1 51316603 51316905 -191347448 + AluSq SINE Alu 1 301 -12 1318 203 72 37 chr1 51316905 51317155 -191347198 + L1MD2 LINE L1 4127 4402 -1744 * 1440 241 142 9 chr1 51317138 51317674 -191346679 + L1MD2 LINE L1 5374 5980 -379 * 2659 158 26 28 chr1 51317320 51317705 -191346648 + L1MB7 LINE L1 5616 6001 -183 1720 181 17 3 chr1 51317705 51317997 -191346356 - AluJo SINE Alu -16 296 1 2659 158 26 28 chr1 51317997 51318157 -191346196 + L1MB7 LINE L1 6001 6160 -24 416 278 155 23 chr1 51318532 51318988 -191345365 - L1ME3A LINE L1 -289 5881 5344 674 271 121 44 chr1 51318998 51319829 -191344524 - L1ME3A LINE L1 -842 5304 4418 1928 139 49 0 chr1 51319903 51320190 -191344163 + AluSg SINE Alu 1 301 -9 2111 100 3 44 chr1 51320212 51320533 -191343820 + AluSc SINE Alu 2 309 0 1858 181 88 7 chr1 51320533 51320941 -191343412 + L1MB4 LINE L1 5740 6180 0 2671 26 7 3 chr1 51320978 51321282 -191343071 - AluY SINE Alu -6 305 1 420 87 0 0 chr1 51321282 51321351 -191343002 + L1MB8 LINE L1 6110 6178 0 256 254 61 9 chr1 51321492 51321606 -191342747 - L1ME3A LINE L1 -2510 3636 3517 * 3365 138 36 62 chr1 51321603 51322294 -191342059 + L1MB2 LINE L1 5458 6130 -41 1841 125 39 4 chr1 51322294 51322574 -191341779 + AluSq SINE Alu 1 290 -23 1006 125 0 0 chr1 51322587 51322747 -191341606 - AluSg/x SINE Alu 0 303 144 1126 251 195 24 chr1 51322847 51323273 -191341080 + MLT1K LTR MaLR 89 587 -1 227 276 17 0 chr1 51323296 51323354 -191340999 - PABL_A LTR ERV1 -249 411 353 2218 78 13 26 chr1 51323779 51324086 -191340267 + AluY SINE Alu 1 303 -8 2151 108 16 10 chr1 51324096 51324403 -191339950 + AluSx SINE Alu 1 309 -3 621 0 0 0 chr1 51324745 51324814 -191339539 + (TG)n Simple_repeat Simple_repeat 2 70 0 306 197 49 0 chr1 51324926 51324987 -191339366 + LTR67 LTR ERVL 4 67 -490 1605 275 64 62 chr1 51325410 51325747 -191338606 + MER115 DNA AcHobo 9 344 -349 1785 170 50 60 chr1 51325747 51326183 -191338170 + MSTB1 LTR MaLR 1 432 0 1605 275 64 62 chr1 51326183 51326352 -191338001 + MER115 DNA AcHobo 344 519 -174 2342 102 7 0 chr1 51326352 51326656 -191337697 - AluSp SINE Alu -7 306 1 1605 275 64 62 chr1 51326656 51326712 -191337641 + MER115 DNA AcHobo 519 573 -120 2392 81 3 3 chr1 51326716 51327012 -191337341 - AluSg SINE Alu -14 296 1 2108 133 3 10 chr1 51327043 51327344 -191337009 - AluSx SINE Alu -11 301 3 250 289 44 26 chr1 51327381 51327495 -191336858 - L1ME3A LINE L1 -2609 3537 3422 2039 118 20 10 chr1 51327765 51328069 -191336284 + AluSx SINE Alu 1 307 -5 2093 96 11 18 chr1 51328346 51328647 -191335706 + AluSg SINE Alu 1 299 0 1775 127 3 90 chr1 51328658 51328980 -191335373 + AluSq SINE Alu 1 294 -19 1607 187 3 11 chr1 51329223 51329530 -191334823 - AluJb SINE Alu 0 305 1 2096 92 60 0 chr1 51329903 51330185 -191334168 - AluSp SINE Alu -14 299 1 1924 97 42 48 chr1 51330212 51330501 -191333852 + AluSx SINE Alu 15 301 -11 588 95 0 24 chr1 51330602 51330710 -191333643 + AluSg/x SINE Alu 206 312 0 223 281 156 0 chr1 51331056 51331152 -191333201 + MIR SINE MIR 57 167 -41 228 296 76 8 chr1 51331278 51331410 -191332943 - L1ME LINE L1 -236 5885 5745 303 306 113 53 chr1 51331948 51332002 -191332351 + L2 LINE L2 1659 1708 -1606 2540 62 0 13 chr1 51332002 51332308 -191332045 + AluY SINE Alu 1 302 -9 303 306 113 53 chr1 51332308 51332605 -191331748 + L2 LINE L2 1708 2039 -1275 2163 110 7 3 chr1 51332605 51332905 -191331448 - AluSg SINE Alu -9 301 1 303 306 113 53 chr1 51332905 51332950 -191331403 + L2 LINE L2 2039 2080 -1234 415 300 58 106 chr1 51332995 51333235 -191331118 + L2 LINE L2 2755 3005 -267 1978 139 0 32 chr1 51333235 51333545 -191330808 - AluSx SINE Alu -12 300 1 415 300 58 106 chr1 51333545 51333843 -191330510 + L2 LINE L2 3005 3264 -8 187 256 0 0 chr1 51334232 51334275 -191330078 - L2 LINE L2 -9 3263 3221 21 36 0 0 chr1 51334321 51334349 -191330004 + AT_rich Low_complexity Low_complexity 1 28 0 2034 127 4 0 chr1 51334581 51334856 -191329497 + AluSx SINE Alu 15 290 -22 394 245 135 20 chr1 51335018 51335218 -191329135 + L2 LINE L2 3027 3249 -64 410 309 161 25 chr1 51335307 51335660 -191328693 - L1MC4a LINE L1 -1878 5930 5530 323 355 165 16 chr1 51335992 51336417 -191327936 + L2 LINE L2 2375 2862 -452 1789 147 41 10 chr1 51336421 51336713 -191327640 - AluJo SINE Alu -11 301 1 415 312 14 28 chr1 51336859 51337000 -191327353 - L2 LINE L2 -3 3310 3172 508 315 42 38 chr1 51337256 51337469 -191326884 - MLT1K LTR MaLR -371 217 4 458 291 137 64 chr1 51337533 51337590 -191326763 + MLT1K LTR MaLR 110 161 -427 868 206 5 78 chr1 51337590 51337729 -191326624 + MER5A DNA MER1_type 1 122 -67 1778 154 16 36 chr1 51337729 51338034 -191326319 - AluJb SINE Alu -13 299 1 868 206 5 78 chr1 51338034 51338098 -191326255 + MER5A DNA MER1_type 122 189 0 458 291 137 64 chr1 51338098 51338477 -191325876 + MLT1K LTR MaLR 161 578 -10 513 83 0 0 chr1 51338571 51338643 -191325710 + MER53 DNA DNA 2 73 -116 1609 176 0 28 chr1 51339347 51339637 -191324716 + AluJo SINE Alu 1 282 -30 1123 66 7 0 chr1 51339656 51339793 -191324560 + AluSg/x SINE Alu 157 294 -16 31 0 0 0 chr1 51339798 51339829 -191324524 + AT_rich Low_complexity Low_complexity 1 31 0 362 264 181 31 chr1 51339841 51340034 -191324319 - MIR SINE MIR -37 225 4 1880 171 7 0 chr1 51340269 51340561 -191323792 + AluJo SINE Alu 1 294 -18 1208 166 5 0 chr1 51340701 51340894 -191323459 + AluJb SINE Alu 119 312 0 1464 188 20 40 chr1 51340906 51341209 -191323144 + AluJo SINE Alu 1 297 -5 1184 234 138 53 chr1 51341378 51341673 -191322680 + L2 LINE L2 2535 2804 -509 2358 103 0 0 chr1 51341673 51341974 -191322379 - AluSx SINE Alu -11 301 1 1184 234 138 53 chr1 51341974 51342400 -191321953 + L2 LINE L2 2804 3313 0 797 289 37 0 chr1 51342416 51342658 -191321695 - MIR SINE MIR -10 252 2 564 222 26 0 chr1 51342758 51342875 -191321478 - FLAM_A SINE Alu -11 131 12 1605 132 0 0 chr1 51342892 51343112 -191321241 - AluJb SINE Alu -8 304 85 2327 82 10 0 chr1 51343414 51343705 -191320648 + AluSc SINE Alu 1 294 -15 762 245 157 50 chr1 51343942 51344325 -191320028 + MLT1L LTR MaLR 179 602 -13 830 155 0 16 chr1 51344631 51344760 -191319593 + AluJ SINE Alu 1 127 -185 33 25 0 0 chr1 51344760 51344800 -191319553 + AT_rich Low_complexity Low_complexity 1 40 0 836 170 151 0 chr1 51345065 51345224 -191319129 + AluJ SINE Alu 129 311 -1 2343 79 7 0 chr1 51345496 51345786 -191318567 - AluSx SINE Alu -20 292 1 859 159 135 0 chr1 51346048 51346211 -191318142 + AluJo SINE Alu 120 304 -8 533 225 197 19 chr1 51346766 51346979 -191317374 + MIR SINE MIR 12 262 0 279 312 200 10 chr1 51347279 51347484 -191316869 - MIR SINE MIR -11 251 8 2403 86 3 0 chr1 51347634 51347935 -191316418 + AluSp SINE Alu 1 302 -11 2182 106 0 7 chr1 51347935 51348227 -191316126 + AluSx SINE Alu 1 290 -22 29 0 0 0 chr1 51348227 51348256 -191316097 + AT_rich Low_complexity Low_complexity 1 29 0 1294 198 55 52 chr1 51348851 51348877 -191315476 + Charlie1b DNA MER1_type 2 26 -2735 2491 73 0 3 chr1 51348877 51349180 -191315173 - AluY SINE Alu -9 302 1 1294 198 55 52 chr1 51349180 51349376 -191314977 + Charlie1b DNA MER1_type 26 228 -2533 2200 121 3 0 chr1 51349376 51349673 -191314680 + AluSq SINE Alu 1 298 -15 1294 198 55 52 chr1 51349673 51349792 -191314561 + Charlie1b DNA MER1_type 228 345 -178 540 126 0 11 chr1 51349814 51349901 -191314452 + FLAM_A SINE Alu 40 125 -17 738 125 56 12 chr1 51349918 51350078 -191314275 + Charlie1b DNA MER1_type 356 522 -1 1926 151 0 26 chr1 51350173 51350478 -191313875 + AluJb SINE Alu 1 297 -15 530 225 29 29 chr1 51350845 51350983 -191313370 - FLAM_C SINE Alu -4 139 2 1926 159 0 7 chr1 51351274 51351582 -191312771 + AluSx SINE Alu 1 306 -6 2182 108 34 0 chr1 51351920 51352217 -191312136 + AluSx SINE Alu 1 307 -5 387 0 0 0 chr1 51352523 51352566 -191311787 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 224 329 12 0 chr1 51352670 51352752 -191311601 - L2 LINE L2 -661 2653 2571 188 65 0 32 chr1 51354735 51354766 -191309587 + (CCCCCA)n Simple_repeat Simple_repeat 5 34 0 198 209 0 0 chr1 51356321 51356364 -191307989 + GA-rich Low_complexity Low_complexity 2 44 0 2310 104 0 0 chr1 51358872 51359171 -191305182 + AluSg SINE Alu 1 299 -11 568 267 24 7 chr1 51360118 51360312 -191304041 - MIR3 SINE MIR -63 145 3 279 307 112 88 chr1 51360322 51360573 -191303780 - L2 LINE L2 0 3272 3016 211 339 0 0 chr1 51360870 51360932 -191303421 + L2 LINE L2 3209 3270 -2 1795 149 14 3 chr1 51361502 51361790 -191302563 + AluJo SINE Alu 1 291 -21 2312 105 0 3 chr1 51362424 51362730 -191301623 - AluSq SINE Alu -8 305 1 1807 127 3 53 chr1 51363111 51363410 -191300943 - AluJo SINE Alu -23 289 6 1668 186 21 117 chr1 51363528 51363973 -191300380 + MLT1C LTR MaLR 5 396 -71 1979 155 7 3 chr1 51363973 51364282 -191300071 - AluJo SINE Alu -2 310 1 1668 186 21 117 chr1 51364282 51364348 -191300005 + MLT1C LTR MaLR 396 467 0 2301 74 3 3 chr1 51364377 51364693 -191299660 - AluSx SINE Alu 0 316 1 184 313 122 59 chr1 51365462 51365539 -191298814 - L2 LINE L2 -351 2963 2892 2724 45 0 0 chr1 51365539 51365850 -191298503 + AluY SINE Alu 1 311 0 184 313 122 59 chr1 51365850 51366060 -191298293 - L2 LINE L2 -422 2892 2658 1540 107 113 47 chr1 51366446 51366566 -191297787 - L1MA4A LINE L1 0 6303 6192 1436 156 12 127 chr1 51366566 51366905 -191297448 - AluJb SINE Alu -12 300 1 1540 107 113 47 chr1 51366905 51367102 -191297251 - L1MA4A LINE L1 -111 6192 5965 2153 255 58 71 chr1 51367486 51367611 -191296742 - MER115 DNA AcHobo 0 693 568 2336 102 0 0 chr1 51367611 51367906 -191296447 + AluSc SINE Alu 1 295 -14 2153 255 58 71 chr1 51367906 51367966 -191296387 - MER115 DNA AcHobo -125 568 509 2328 105 7 0 chr1 51367966 51368270 -191296083 + AluSp SINE Alu 1 306 -7 2153 255 58 71 chr1 51368270 51368439 -191295914 - MER115 DNA AcHobo -184 509 339 1775 172 50 62 chr1 51368439 51368876 -191295477 - MSTB1 LTR MaLR 0 432 1 2153 255 58 71 chr1 51368876 51369213 -191295140 - MER115 DNA AcHobo -354 339 9 196 349 38 30 chr1 51371540 51371672 -191292681 - L2 LINE L2 -809 2505 2373 198 348 52 0 chr1 51371719 51371834 -191292519 - L2 LINE L2 -1052 2262 2142 339 307 198 31 chr1 51371917 51372341 -191292012 - L2 LINE L2 -1392 1922 1428 2119 111 0 0 chr1 51372381 51372669 -191291684 - AluSx SINE Alu -24 288 1 1225 197 71 29 chr1 51372698 51372756 -191291597 - L1MEc LINE L1 -3215 3000 2946 1949 145 3 0 chr1 51372756 51373053 -191291300 - AluJb SINE Alu -14 298 1 1225 197 71 29 chr1 51373053 51373344 -191291009 - L1MEc LINE L1 -3269 2946 2636 979 214 60 22 chr1 51373351 51373500 -191290853 + L1MDa LINE L1 2480 2622 -3918 1605 190 7 3 chr1 51373500 51373805 -191290548 - AluJb SINE Alu -6 306 1 979 214 60 22 chr1 51373805 51374009 -191290344 + L1MDa LINE L1 2622 2841 -3699 1965 117 0 29 chr1 51374016 51374151 -191290202 + AluSq SINE Alu 1 138 -175 2189 105 0 0 chr1 51374151 51374445 -191289908 + AluSx SINE Alu 1 294 -18 1965 117 0 29 chr1 51374445 51374618 -191289735 + AluSq SINE Alu 138 300 -13 1210 89 18 0 chr1 51374618 51374787 -191289566 + AluSg/x SINE Alu 132 303 -7 2621 175 29 88 chr1 51374787 51375198 -191289155 - LTR8 LTR ERV1 -82 609 248 2195 129 48 28 chr1 51375198 51375555 -191288798 - THE1B LTR MaLR 0 364 1 2621 175 29 88 chr1 51375555 51375790 -191288563 - LTR8 LTR ERV1 -443 248 1 236 245 28 38 chr1 51375802 51375908 -191288445 - L1MEc LINE L1 -4451 1945 1841 409 167 111 0 chr1 51375945 51376053 -191288300 - MLT1D LTR MaLR -7 498 379 1700 182 3 10 chr1 51376218 51376526 -191287827 - AluJb SINE Alu -6 306 1 2105 118 3 0 chr1 51376527 51376824 -191287529 - AluSp SINE Alu -15 298 1 261 200 94 0 chr1 51376825 51376910 -191287443 - L1M4 LINE L1 -2851 3295 3203 592 140 140 0 chr1 51376936 51377072 -191287281 - L1MA8 LINE L1 -5 6286 6132 728 128 0 146 chr1 51377072 51377236 -191287117 - FRAM SINE Alu -12 164 25 800 106 29 158 chr1 51377257 51377337 -191287016 - L1MA8 LINE L1 -149 6142 6053 2058 125 0 10 chr1 51377337 51377650 -191286703 - AluSg SINE Alu 0 310 1 800 106 29 158 chr1 51377650 51377664 -191286689 - L1MA8 LINE L1 -238 6053 6039 2278 94 3 0 chr1 51377664 51377973 -191286380 - AluSp SINE Alu -3 310 1 800 106 29 158 chr1 51377973 51378123 -191286230 - L1MA8 LINE L1 -252 6039 5929 2278 131 6 116 chr1 51378127 51378608 -191285745 + MSTC LTR MaLR 1 428 0 2690 220 36 53 chr1 51378610 51378957 -191285396 + MSTC-int LTR MaLR 2 353 -1382 1967 124 11 0 chr1 51378957 51379269 -191285084 + AluSx SINE Alu 1 315 0 2690 220 36 53 chr1 51379269 51379535 -191284818 + MSTC-int LTR MaLR 353 606 -1129 2235 91 0 10 chr1 51379535 51379843 -191284510 + AluY SINE Alu 1 305 -6 2690 220 36 53 chr1 51379843 51379945 -191284408 + MSTC-int LTR MaLR 606 708 -1027 1586 178 7 41 chr1 51379945 51380238 -191284115 + MSTB LTR MaLR 1 283 -143 1936 99 34 17 chr1 51380238 51380372 -191283981 + AluSg SINE Alu 1 131 -179 2333 84 0 3 chr1 51380372 51380683 -191283670 + AluY SINE Alu 1 310 -1 1936 99 34 17 chr1 51380683 51380842 -191283511 + AluSg SINE Alu 131 299 -11 613 175 49 35 chr1 51380895 51381038 -191283315 + MIR SINE MIR 68 212 -50 180 0 0 0 chr1 51381414 51381434 -191282919 + (A)n Simple_repeat Simple_repeat 1 20 0 476 293 7 20 chr1 51381435 51381582 -191282771 - MLT1I LTR MaLR -264 145 1 631 314 85 14 chr1 51381632 51381925 -191282428 - L3 LINE CR1 -173 1404 1091 421 330 71 65 chr1 51382086 51382628 -191281725 + L2 LINE L2 2709 3247 -25 281 311 150 56 chr1 51382626 51382932 -191281421 - L2 LINE L2 -14 3258 2924 * 798 171 0 0 chr1 51383084 51383207 -191281146 - FLAM_C SINE Alu -19 124 2 21 0 0 0 chr1 51383280 51383301 -191281052 + AT_rich Low_complexity Low_complexity 1 21 0 1137 231 61 7 chr1 51383304 51383717 -191280636 - MLT1H LTR MaLR -28 521 24 2057 118 10 0 chr1 51383914 51384219 -191280134 + AluJb SINE Alu 1 308 -4 238 243 57 0 chr1 51384227 51384297 -191280056 + MIR SINE MIR 84 157 -105 755 152 228 6 chr1 51384301 51384459 -191279894 + MER66B LTR ERV1 291 483 -3 180 0 0 0 chr1 51385249 51385269 -191279084 + (T)n Simple_repeat Simple_repeat 1 20 0 1044 70 0 0 chr1 51385269 51385397 -191278956 - AluSq/x SINE Alu -179 133 6 376 214 0 0 chr1 51385756 51385826 -191278527 + L1M3 LINE L1 5397 5466 -714 2060 132 0 0 chr1 51385829 51386133 -191278220 - AluSx SINE Alu -8 304 1 268 269 75 32 chr1 51386169 51386262 -191278091 + L3 LINE CR1 1249 1345 -232 865 249 96 22 chr1 51386296 51386525 -191277828 - MIR SINE MIR -16 246 1 256 245 206 0 chr1 51386528 51386630 -191277723 + L3 LINE CR1 1352 1474 -103 596 306 86 5 chr1 51386662 51386871 -191277482 - MIR SINE MIR -35 227 2 2039 98 6 50 chr1 51386895 51387212 -191277141 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr1 51387368 51387389 -191276964 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 51387427 51387455 -191276898 + AT_rich Low_complexity Low_complexity 1 28 0 1765 134 27 20 chr1 51387467 51387766 -191276587 + AluJb SINE Alu 1 301 -11 407 261 180 9 chr1 51387769 51387991 -191276362 + L1MC/D LINE L1 5378 5637 -2171 229 176 0 88 chr1 51388021 51388089 -191276264 + L1MC/D LINE L1 5855 5916 -1892 2290 60 10 10 chr1 51388089 51388391 -191275962 + AluSq SINE Alu 1 302 -11 267 176 65 39 chr1 51389241 51389394 -191274959 + CT-rich Low_complexity Low_complexity 2 158 0 2039 128 0 7 chr1 51389394 51389698 -191274655 - AluSx SINE Alu -10 302 1 808 144 23 23 chr1 51389738 51389870 -191274483 + AluJo SINE Alu 3 134 -178 23 0 0 0 chr1 51389870 51389893 -191274460 + AT_rich Low_complexity Low_complexity 1 23 0 2082 80 0 22 chr1 51389903 51390216 -191274137 + AluY SINE Alu 1 306 -5 681 292 24 32 chr1 51390457 51390715 -191273638 + MIR SINE MIR 1 261 -1 216 265 29 0 chr1 51394673 51394741 -191269612 + GA-rich Low_complexity Low_complexity 1 70 0 190 314 154 30 chr1 51395370 51395539 -191268814 - L2 LINE L2 -178 3094 2905 294 170 0 0 chr1 51395542 51395589 -191268764 + MER69 DNA AcHobo 1 47 -2479 2406 43 20 0 chr1 51395590 51395890 -191268463 + AluY SINE Alu 1 306 -5 1596 93 31 0 chr1 51395892 51396118 -191268235 + MER41A LTR ERV1 322 554 0 282 254 0 0 chr1 51396263 51396330 -191268023 - MER69 DNA AcHobo -12 2514 2448 580 90 0 0 chr1 51396404 51396482 -191267871 - Charlie1 DNA MER1_type -830 1931 1854 1964 97 37 0 chr1 51396488 51396787 -191267566 + AluSq SINE Alu 1 310 -3 1847 139 3 7 chr1 51396789 51397084 -191267269 + AluSx SINE Alu 1 294 -18 234 248 119 0 chr1 51397101 51397202 -191267151 + L1M4 LINE L1 3349 3461 -2685 344 192 77 0 chr1 51397292 51397370 -191266983 - MER112 DNA MER1_type -90 170 87 315 0 0 0 chr1 51397376 51397411 -191266942 + (TG)n Simple_repeat Simple_repeat 2 36 0 2034 127 3 0 chr1 51397431 51397722 -191266631 - AluSx SINE Alu -20 292 1 2135 123 0 0 chr1 51397722 51398015 -191266338 - AluSx SINE Alu -19 293 1 630 235 53 18 chr1 51398383 51398553 -191265800 - MIR SINE MIR -21 241 66 822 102 55 24 chr1 51398730 51398857 -191265496 - FLAM_C SINE Alu -2 131 1 1907 136 14 0 chr1 51398867 51399161 -191265192 - AluSx SINE Alu -14 298 1 245 308 46 39 chr1 51399161 51399282 -191265071 + MIR SINE MIR 22 146 -62 1686 218 113 30 chr1 51399291 51399796 -191264557 - MLT1H LTR MaLR 0 549 3 1440 204 8 79 chr1 51399956 51399999 -191264354 - MLT1A1 LTR MaLR 0 365 321 2022 117 0 3 chr1 51399999 51400281 -191264072 + AluSc SINE Alu 1 283 -26 213 65 0 0 chr1 51400281 51400312 -191264041 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 1440 204 8 79 chr1 51400320 51400669 -191263684 - MLT1A1 LTR MaLR -44 321 1 1148 235 21 8 chr1 51401226 51401464 -191262889 - MIR SINE MIR -6 256 16 575 278 103 68 chr1 51401526 51401778 -191262575 - MIR SINE MIR 0 262 2 201 190 172 17 chr1 51401938 51401996 -191262357 + L2 LINE L2 3202 3268 -4 257 304 25 13 chr1 51402372 51402451 -191261902 - MIR SINE MIR -92 116 37 252 158 18 35 chr1 51402724 51402781 -191261572 - L2 LINE L2 -1 3271 3216 22 35 0 0 chr1 51403160 51403189 -191261164 + AT_rich Low_complexity Low_complexity 1 29 0 358 248 16 58 chr1 51403207 51403267 -191261086 + MIR SINE MIR 96 150 -112 2096 121 7 0 chr1 51403267 51403565 -191260788 - AluSx SINE Alu -12 300 1 358 248 16 58 chr1 51403565 51403625 -191260728 + MIR SINE MIR 150 211 -51 2580 39 0 0 chr1 51404112 51404418 -191259935 - AluY SINE Alu -5 306 1 2011 139 175 47 chr1 51404425 51404912 -191259441 - LTR10A LTR ERV1 0 609 12 1473 234 11 25 chr1 51404921 51405284 -191259069 - LTR10A-int LTR ERV1 -2 6647 6290 * 7729 112 16 1 chr1 51405283 51406446 -191257907 - HERV17 LTR ERV1 -3910 2986 1806 2755 46 3 0 chr1 51406445 51406768 -191257585 - LTR17 LTR ERV1 -456 324 1 * 2348 71 3 0 chr1 51406772 51407068 -191257285 - HERV17 LTR ERV1 -5 8621 6836 250 154 0 0 chr1 51407048 51407087 -191257266 - HERV17 LTR ERV1 -1078 7548 7510 * 23289 51 1 1 chr1 51407082 51409809 -191254544 - HERV17 LTR ERV1 -2609 6017 3291 372 280 76 34 chr1 51410468 51410586 -191253767 - L1ME2 LINE L1 0 6164 6042 1700 139 0 87 chr1 51410594 51410926 -191253427 + AluJo SINE Alu 1 303 -9 1695 137 29 11 chr1 51410967 51411270 -191253083 + AluSx SINE Alu 1 308 0 1166 180 18 4 chr1 51411650 51411898 -191252455 - L1ME1 LINE L1 -243 5923 5676 2186 107 3 7 chr1 51411906 51412214 -191252139 - AluSq SINE Alu -6 307 1 1040 147 6 0 chr1 51412239 51412416 -191251937 - AluY SINE Alu -5 306 129 1116 112 85 5 chr1 51412427 51412615 -191251738 - AluSq SINE Alu -108 205 3 1812 86 12 12 chr1 51412639 51412883 -191251470 - AluSp SINE Alu -69 244 1 886 78 13 6 chr1 51412890 51413122 -191251231 - AluY SINE Alu -10 301 35 2007 111 7 10 chr1 51413127 51413425 -191250928 - AluSx SINE Alu -15 297 1 819 172 0 0 chr1 51413442 51413570 -191250783 - FLAM_C SINE Alu -4 129 2 1214 205 72 22 chr1 51413570 51413848 -191250505 - AluJo SINE Alu -10 292 1 416 125 0 16 chr1 51413924 51413988 -191250365 + AluJ/FLAM SINE Alu 7 69 -233 1724 57 8 28 chr1 51414167 51414414 -191249939 - AluY SINE Alu -69 242 1 323 289 56 21 chr1 51414453 51414595 -191249758 + MIR SINE MIR 52 198 -64 2383 69 3 3 chr1 51414601 51414907 -191249446 - AluYb8 SINE Alu -12 306 1 11517 38 4 1 chr1 51414907 51416240 -191248113 - HERV17 LTR ERV1 -5337 3289 1953 283 143 0 0 chr1 51416228 51416270 -191248083 - HERV17 LTR ERV1 -8583 43 2 * 3157 58 63 0 chr1 51416270 51416668 -191247685 - LTR17 LTR ERV1 0 780 358 1700 211 27 99 chr1 51416771 51417106 -191247247 - L1M4 LINE L1 -1953 4193 3835 2006 93 38 0 chr1 51417106 51417397 -191246956 - AluSx SINE Alu -10 302 1 1700 211 27 99 chr1 51417397 51417509 -191246844 - L1M4 LINE L1 -2311 3835 3716 1903 139 0 3 chr1 51417509 51417804 -191246549 - AluSx SINE Alu -18 294 1 1700 211 27 99 chr1 51417804 51417862 -191246491 - L1M4 LINE L1 -2430 3716 3739 2104 63 0 0 chr1 51417862 51418131 -191246222 - AluY SINE Alu -16 295 27 1700 211 27 99 chr1 51418131 51418259 -191246094 - L1M4 LINE L1 -2406 3740 3604 1667 70 0 46 chr1 51418259 51418500 -191245853 - AluSq SINE Alu 0 313 84 2299 17 7 17 chr1 51418504 51418792 -191245561 - AluY SINE Alu 0 311 27 1463 128 26 15 chr1 51418792 51419065 -191245288 - L1MA4 LINE L1 -8 6292 6017 2253 69 13 10 chr1 51419067 51419371 -191244982 - AluY SINE Alu -6 305 1 2182 93 7 3 chr1 51419371 51419672 -191244681 - AluSp SINE Alu -11 302 1 1033 165 55 35 chr1 51419694 51419894 -191244459 + MER20 DNA MER1_type 15 218 -1 750 249 42 74 chr1 51419895 51419952 -191244401 - L1M4 LINE L1 -2677 3469 3412 2109 117 7 0 chr1 51419952 51420250 -191244103 - AluSx SINE Alu -12 300 1 750 249 42 74 chr1 51420250 51420361 -191243992 - L1M4 LINE L1 -2734 3412 3299 575 212 217 16 chr1 51420361 51420545 -191243808 + MER58A DNA MER1_type 4 224 0 750 249 42 74 chr1 51420545 51420753 -191243600 - L1M4 LINE L1 -2847 3299 3104 1110 155 44 129 chr1 51420759 51420881 -191243472 - MER65A LTR ERV1 0 445 314 1871 152 3 10 chr1 51420881 51421191 -191243162 - AluJb SINE Alu -4 308 1 1110 155 44 129 chr1 51421191 51421410 -191242943 - MER65A LTR ERV1 -131 314 133 1139 183 27 112 chr1 51421411 51421516 -191242837 - MER66A LTR ERV1 -1 477 365 1657 178 0 0 chr1 51421516 51421797 -191242556 - AluJo SINE Alu -21 291 11 1139 183 27 112 chr1 51421797 51422029 -191242324 - MER66A LTR ERV1 -113 365 169 261 256 310 16 chr1 51422005 51422134 -191242219 - MER41B LTR ERV1 -295 340 174 * 2203 152 0 43 chr1 51422189 51422233 -191242120 - MER65A-int LTR ERV1 -1 6675 6631 1754 148 14 0 chr1 51422233 51422517 -191241836 + AluSx SINE Alu 1 288 -24 2203 152 0 43 chr1 51422517 51422840 -191241513 - MER65A-int LTR ERV1 -45 6631 6324 2484 41 0 0 chr1 51422915 51423209 -191241144 - AluY SINE Alu -17 294 1 457 206 119 52 chr1 51423227 51423275 -191241078 - LOR1-int LTR ERV1 -6229 1891 1848 2236 101 0 7 chr1 51423275 51423583 -191240770 - AluSp SINE Alu -7 306 1 457 206 119 52 chr1 51423583 51423620 -191240733 - LOR1-int LTR ERV1 -6272 1848 1815 1503 186 41 0 chr1 51423620 51423915 -191240438 - AluJo SINE Alu -5 307 1 457 206 119 52 chr1 51423915 51424080 -191240273 - LOR1-int LTR ERV1 -6305 1815 1623 1947 122 27 3 chr1 51424086 51424380 -191239973 - AluSg SINE Alu -9 301 1 436 222 46 9 chr1 51424393 51424501 -191239852 - LOR1-int LTR ERV1 -6626 1494 1383 26 0 0 0 chr1 51424531 51424557 -191239796 + AT_rich Low_complexity Low_complexity 1 26 0 274 186 0 0 chr1 51424618 51424661 -191239692 + MSTA LTR MaLR 6 48 -380 * 1086 84 155 70 chr1 51424645 51424679 -191239674 + MSTA LTR MaLR 164 194 -234 1848 113 36 43 chr1 51424679 51424981 -191239372 + AluSg SINE Alu 1 300 -10 1086 84 155 70 chr1 51424981 51425159 -191239194 + MSTA LTR MaLR 194 394 -34 2322 77 0 0 chr1 51425159 51425458 -191238895 - AluY SINE Alu -12 299 1 204 125 0 0 chr1 51425468 51425500 -191238853 + (T)n Simple_repeat Simple_repeat 1 32 0 1323 137 26 31 chr1 51425540 51425767 -191238586 - THE1B LTR MaLR -138 226 1 347 161 37 49 chr1 51425843 51425924 -191238429 - Alu SINE Alu -4 298 236 * 1424 164 46 87 chr1 51425923 51426057 -191238296 - THE1C LTR MaLR -28 347 209 7325 78 6 5 chr1 51426057 51427025 -191237328 - LTR5 LTR ERVK 0 969 1 1424 164 46 87 chr1 51427025 51427222 -191237131 - THE1C LTR MaLR -166 209 28 2218 74 0 17 chr1 51427222 51427521 -191236832 + AluY SINE Alu 1 294 -17 1424 164 46 87 chr1 51427521 51427535 -191236818 - THE1C LTR MaLR -347 28 15 574 175 49 35 chr1 51477844 51477987 -191186366 - MIR SINE MIR -50 212 68 2062 102 34 17 chr1 51478040 51478199 -191186154 - AluSg SINE Alu -11 299 131 2491 84 0 3 chr1 51478199 51478510 -191185843 - AluY SINE Alu -1 310 1 2062 102 34 17 chr1 51478510 51478644 -191185709 - AluSg SINE Alu -179 131 1 1530 178 7 41 chr1 51478644 51478937 -191185416 - MSTB LTR MaLR -143 283 1 2593 220 36 53 chr1 51478937 51479039 -191185314 - MSTC-int LTR MaLR -1027 708 606 2396 91 0 10 chr1 51479039 51479347 -191185006 - AluY SINE Alu -6 305 1 2593 220 36 53 chr1 51479347 51479613 -191184740 - MSTC-int LTR MaLR -1129 606 337 2114 124 11 0 chr1 51479613 51479925 -191184428 - AluSx SINE Alu 0 315 1 2593 220 36 53 chr1 51479925 51480272 -191184081 - MSTC-int LTR MaLR -1398 337 2 2169 135 6 116 chr1 51480274 51480755 -191183598 - MSTC LTR MaLR 0 428 1 742 106 29 158 chr1 51480759 51480909 -191183444 + L1MA8 LINE L1 5929 6097 -194 2442 94 3 0 chr1 51480909 51481218 -191183135 + AluSp SINE Alu 1 310 -3 742 106 29 158 chr1 51481218 51481232 -191183121 + L1MA8 LINE L1 6097 6111 -180 2218 125 0 10 chr1 51481232 51481545 -191182808 + AluSg SINE Alu 1 310 0 742 106 29 158 chr1 51481545 51481625 -191182728 + L1MA8 LINE L1 6111 6142 -149 686 128 0 146 chr1 51481646 51481810 -191182543 + FRAM SINE Alu 25 164 -12 551 140 140 0 chr1 51481810 51481946 -191182407 + L1MA8 LINE L1 6132 6286 -5 590 233 93 112 chr1 51481954 51482058 -191182295 + L1M4 LINE L1 3185 3289 -2857 2258 118 3 0 chr1 51482058 51482355 -191181998 + AluSp SINE Alu 1 298 -15 1952 176 0 10 chr1 51482356 51482669 -191181684 + AluJb SINE Alu 1 310 -2 590 233 93 112 chr1 51482669 51482728 -191181625 + L1M4 LINE L1 3289 3348 -2798 2414 64 37 0 chr1 51482728 51483025 -191181328 + AluSp SINE Alu 1 308 -5 1998 132 14 7 chr1 51483028 51483323 -191181030 + AluSx SINE Alu 1 297 -15 590 233 93 112 chr1 51483323 51483465 -191180888 + L1M4 LINE L1 3350 3491 -2655 327 192 77 0 chr1 51483531 51483609 -191180744 - MER112 DNA MER1_type -90 170 87 297 0 0 0 chr1 51483615 51483648 -191180705 + (TG)n Simple_repeat Simple_repeat 2 34 0 2186 127 3 0 chr1 51483668 51483959 -191180394 - AluSx SINE Alu -20 292 1 2288 123 0 0 chr1 51483959 51484252 -191180101 - AluSx SINE Alu -19 293 1 590 241 53 18 chr1 51484620 51484790 -191179563 - MIR SINE MIR -21 241 66 780 102 55 24 chr1 51484967 51485094 -191179259 - FLAM_C SINE Alu -2 131 1 2057 136 14 0 chr1 51485104 51485398 -191178955 - AluSx SINE Alu -14 298 1 225 331 31 23 chr1 51485398 51485519 -191178834 + MIR SINE MIR 22 146 -62 1578 224 113 30 chr1 51485528 51486033 -191178320 - MLT1H LTR MaLR 0 549 3 1358 204 8 79 chr1 51486193 51486236 -191178117 - MLT1A1 LTR MaLR 0 365 321 2176 117 0 3 chr1 51486236 51486518 -191177835 + AluSc SINE Alu 1 283 -26 213 65 0 0 chr1 51486518 51486549 -191177804 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 1358 204 8 79 chr1 51486557 51486906 -191177447 - MLT1A1 LTR MaLR -44 321 1 1083 235 21 8 chr1 51487463 51487701 -191176652 - MIR SINE MIR -6 256 16 520 278 103 68 chr1 51487763 51488015 -191176338 - MIR SINE MIR 0 262 2 185 190 172 17 chr1 51488175 51488233 -191176120 + L2 LINE L2 3202 3268 -4 234 304 25 13 chr1 51488609 51488688 -191175665 - MIR SINE MIR -92 116 37 236 154 19 19 chr1 51488963 51489015 -191175338 - L2 LINE L2 -1 3312 3261 22 35 0 0 chr1 51489400 51489429 -191174924 + AT_rich Low_complexity Low_complexity 1 29 0 326 248 16 58 chr1 51489447 51489507 -191174846 + MIR SINE MIR 96 150 -112 2249 121 7 0 chr1 51489507 51489805 -191174548 - AluSx SINE Alu -12 300 1 326 248 16 58 chr1 51489805 51489865 -191174488 + MIR SINE MIR 150 211 -51 2740 39 0 0 chr1 51490352 51490658 -191173695 - AluY SINE Alu -5 306 1 1890 139 175 47 chr1 51490665 51491152 -191173201 - LTR10A LTR ERV1 0 609 12 1439 237 11 25 chr1 51491161 51491524 -191172829 - LTR10A-int LTR ERV1 -2 6647 6290 * 7358 116 16 0 chr1 51491523 51492686 -191171667 - Harlequin LTR ERV1 -3910 2986 1806 2619 46 3 0 chr1 51492685 51493008 -191171345 - LTR17 LTR ERV1 -456 324 1 * 2243 71 3 0 chr1 51493012 51493308 -191171045 - HERV17 LTR ERV1 -5 8621 6836 33238 45 2 4 chr1 51493322 51496060 -191168293 - HERV17 LTR ERV1 -2609 6017 3287 2417 83 3 13 chr1 51496060 51496362 -191167991 - AluY SINE Alu -12 299 1 33238 45 2 4 chr1 51496362 51497695 -191166658 - HERV17 LTR ERV1 -5339 3287 1953 274 143 0 0 chr1 51497683 51497725 -191166628 - HERV17 LTR ERV1 -8583 43 2 * 3851 53 50 4 chr1 51497725 51498230 -191166123 - LTR17 LTR ERV1 0 780 253 5527 95 4 36 chr1 51498246 51499125 -191165228 - LTR10A-int LTR ERV1 -5210 1686 792 2514 55 0 3 chr1 51499125 51499417 -191164936 - AluY SINE Alu -20 291 1 5527 95 4 36 chr1 51499417 51499505 -191164848 - LTR10A-int LTR ERV1 -6104 792 703 271 176 132 77 chr1 51499568 51499659 -191164694 - LTR10A-int LTR ERV1 -5579 1070 975 983 240 84 113 chr1 51499696 51500384 -191163969 - LTR10A-int LTR ERV1 -5954 695 28 1602 181 113 39 chr1 51500396 51500878 -191163475 - LTR10A LTR ERV1 -35 574 1 183 327 55 42 chr1 51501784 51501831 -191162522 - MIR3 SINE MIR -6 202 157 2244 88 26 3 chr1 51501831 51502136 -191162217 - AluSx SINE Alu 0 312 1 183 327 55 42 chr1 51502136 51502253 -191162100 - MIR3 SINE MIR -51 157 36 194 94 31 0 chr1 51502637 51502669 -191161684 - MIR SINE MIR -129 79 47 4900 161 36 46 chr1 51502767 51503746 -191160607 - LTR5 LTR ERVK 0 969 1 2540 71 0 3 chr1 51504456 51504766 -191159587 - AluSx SINE Alu -3 309 1 407 145 29 0 chr1 51504767 51504836 -191159517 - AluSq/x SINE Alu -167 145 75 2320 96 3 3 chr1 51504836 51505138 -191159215 - AluSq SINE Alu -11 302 1 2350 91 0 3 chr1 51505440 51505736 -191158617 - AluSx SINE Alu -15 297 3 270 224 15 0 chr1 51506647 51506714 -191157639 + L1MC4a LINE L1 5866 5933 -1875 542 187 30 9 chr1 51507732 51507971 -191156382 + G-rich Low_complexity Low_complexity 1 244 0 2563 43 20 0 chr1 51508082 51508382 -191155971 - AluY SINE Alu -5 306 1 283 170 0 0 chr1 51508383 51508430 -191155923 - MER69 DNA AcHobo -2479 47 1 216 265 29 0 chr1 51509231 51509299 -191155054 + CT-rich Low_complexity Low_complexity 1 70 0 635 292 24 32 chr1 51513256 51513514 -191150839 - MIR SINE MIR -1 261 1 21 0 0 0 chr1 51513867 51513888 -191150465 + AT_rich Low_complexity Low_complexity 1 21 0 2407 96 0 3 chr1 51513888 51514191 -191150162 + AluSx SINE Alu 1 302 -10 1134 131 6 18 chr1 51514269 51514288 -191150065 + AluSq SINE Alu 116 134 -179 2442 88 0 7 chr1 51514288 51514595 -191149758 + AluSx SINE Alu 1 305 -7 1134 131 6 18 chr1 51514595 51514743 -191149610 + AluSq SINE Alu 134 281 -32 2181 129 0 0 chr1 51515176 51515478 -191148875 + AluSx SINE Alu 1 302 -10 2474 83 0 10 chr1 51515886 51516200 -191148153 - AluY SINE Alu 0 311 1 2416 92 16 3 chr1 51516451 51516756 -191147597 + AluSq SINE Alu 1 309 -4 2309 112 10 0 chr1 51516829 51517132 -191147221 - AluSq SINE Alu -7 306 1 2570 67 0 10 chr1 51517145 51517458 -191146895 - AluY SINE Alu 0 311 2 336 367 89 0 chr1 51518034 51518203 -191146150 - MIR3 SINE MIR -8 200 17 688 128 30 45 chr1 51518267 51518400 -191145953 + FLAM_C SINE Alu 1 131 -2 434 208 59 0 chr1 51518543 51518644 -191145709 + Charlie8 DNA MER1_type 295 401 -2016 491 250 75 19 chr1 51518649 51518809 -191145544 - MLT1J LTR MaLR -6 505 337 737 228 43 109 chr1 51518894 51519103 -191145250 - MLT1J LTR MaLR -202 309 128 2391 47 7 0 chr1 51519103 51519377 -191144976 + AluSp SINE Alu 1 276 -37 737 228 43 109 chr1 51519377 51519496 -191144857 - MLT1J LTR MaLR -383 128 3 720 165 0 0 chr1 51519564 51519679 -191144674 + AluJo/FLAM SINE Alu 2 116 -196 2098 71 0 0 chr1 51519679 51519934 -191144419 - AluY SINE Alu -7 304 50 23 0 0 0 chr1 51520051 51520074 -191144279 + AT_rich Low_complexity Low_complexity 1 23 0 829 144 23 23 chr1 51520074 51520206 -191144147 - AluJo SINE Alu -178 134 3 2218 132 0 3 chr1 51520247 51520550 -191143803 + AluSx SINE Alu 1 302 -10 267 176 65 39 chr1 51520550 51520703 -191143650 + GA-rich Low_complexity Low_complexity 2 158 0 2309 60 10 10 chr1 51521553 51521855 -191142498 - AluSq SINE Alu -11 302 1 303 261 0 14 chr1 51521862 51521931 -191142422 - L1MC4a LINE L1 -1894 5914 5847 359 266 180 9 chr1 51521953 51522175 -191142178 - L1MC4a LINE L1 -2171 5637 5378 1795 134 27 20 chr1 51522178 51522477 -191141876 - AluJb SINE Alu -11 301 1 21 36 0 0 chr1 51522489 51522517 -191141836 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 51522555 51522576 -191141777 + AT_rich Low_complexity Low_complexity 1 21 0 2091 92 6 50 chr1 51522732 51523049 -191141304 - AluSq SINE Alu -10 303 1 571 306 86 5 chr1 51523073 51523282 -191141071 + MIR SINE MIR 2 227 -35 238 245 206 0 chr1 51523314 51523416 -191140937 - L3 LINE CR1 -103 1474 1352 790 249 96 22 chr1 51523419 51523648 -191140705 + MIR SINE MIR 1 246 -16 227 312 54 11 chr1 51523682 51523775 -191140578 - L3 LINE CR1 -232 1345 1249 2339 74 3 0 chr1 51523811 51524107 -191140246 + AluSq SINE Alu 1 297 -16 1751 142 17 7 chr1 51524151 51524446 -191139907 - AluJb SINE Alu -14 298 1 2311 71 7 3 chr1 51524582 51524892 -191139461 + AluY SINE Alu 1 311 0 1582 149 0 15 chr1 51525355 51525616 -191138737 - AluJb SINE Alu -17 295 39 382 304 104 10 chr1 51525876 51526085 -191138268 - L1MEc LINE L1 -3812 2403 2211 1110 127 12 0 chr1 51526087 51526253 -191138100 - AluSg/x SINE Alu -11 299 132 2245 76 0 7 chr1 51526253 51526567 -191137786 - AluSx SINE Alu 0 312 1 2312 93 0 0 chr1 51526570 51526870 -191137483 - AluSc SINE Alu -8 301 2 350 123 46 0 chr1 51527026 51527091 -191137262 + HY1 scRNA scRNA 34 101 -11 2013 137 0 10 chr1 51527147 51527453 -191136900 + AluSx SINE Alu 1 303 -9 1040 108 0 36 chr1 51527552 51527719 -191136634 - AluSc SINE Alu -13 296 136 49 20 0 0 chr1 51527723 51527774 -191136579 + AT_rich Low_complexity Low_complexity 1 51 0 1224 113 0 6 chr1 51527811 51527988 -191136365 - AluSg/x SINE Alu -21 291 116 457 128 47 70 chr1 51527988 51528074 -191136279 - AluJo SINE Alu -143 169 86 1137 170 9 36 chr1 51528151 51528200 -191136153 + AluJo SINE Alu 87 136 -176 2504 62 0 0 chr1 51528200 51528508 -191135845 + AluY SINE Alu 1 308 -3 204 40 0 0 chr1 51528508 51528533 -191135820 + (TA)n Simple_repeat Simple_repeat 2 26 0 1137 170 9 36 chr1 51528533 51528706 -191135647 + AluJo SINE Alu 134 304 -8 247 369 18 0 chr1 51528723 51528834 -191135519 - L3 LINE CR1 -1023 554 442 1175 142 0 0 chr1 51529248 51529424 -191134929 + AluSg/x SINE Alu 130 305 -5 23 33 0 0 chr1 51531221 51531251 -191133102 + AT_rich Low_complexity Low_complexity 1 30 0 1026 281 45 8 chr1 51531784 51532136 -191132217 + L1ME3 LINE L1 5561 5925 -237 256 276 52 0 chr1 51532150 51532266 -191132087 - L1ME1 LINE L1 0 6166 6045 1768 133 0 87 chr1 51532274 51532606 -191131747 + AluJo SINE Alu 1 303 -9 1718 137 29 11 chr1 51532647 51532950 -191131403 + AluSx SINE Alu 1 308 0 2282 202 17 26 chr1 51533330 51533586 -191130767 - L1ME1 LINE L1 -243 5923 5666 2213 110 3 7 chr1 51533586 51533894 -191130459 - AluSq SINE Alu -6 307 1 2282 202 17 26 chr1 51533894 51534098 -191130255 - L1ME1 LINE L1 -500 5666 5466 1946 161 0 0 chr1 51534098 51534402 -191129951 + AluSx SINE Alu 1 304 -8 2282 202 17 26 chr1 51534402 51534475 -191129878 - L1ME1 LINE L1 -700 5466 5394 1026 78 0 0 chr1 51534834 51534962 -191129391 + AluSq/x SINE Alu 6 133 -180 180 0 0 0 chr1 51534962 51534982 -191129371 + (A)n Simple_repeat Simple_repeat 1 20 0 719 152 228 6 chr1 51535772 51535930 -191128423 - MER66A LTR ERV1 -3 475 283 214 243 57 0 chr1 51535934 51536004 -191128349 - MIR SINE MIR -105 157 84 2089 121 10 0 chr1 51536012 51536317 -191128036 - AluSx SINE Alu -4 308 1 1119 253 86 2 chr1 51536514 51536943 -191127410 + MLT1H LTR MaLR 24 534 -8 812 171 0 0 chr1 51537024 51537147 -191127206 + FLAM_C SINE Alu 2 124 -19 209 356 131 36 chr1 51537299 51537605 -191126748 + L2 LINE L2 2924 3258 -14 * 354 322 119 41 chr1 51537593 51538145 -191126208 - L2 LINE L2 -16 3297 2709 616 328 75 3 chr1 51538306 51538599 -191125754 + L3 LINE CR1 1091 1404 -173 187 341 98 0 chr1 51538805 51538887 -191125466 + L2 LINE L2 2956 3045 -268 673 91 0 0 chr1 51538888 51538976 -191125377 + pTR5 LTR ERV1 305 392 -2046 200 208 75 38 chr1 51539168 51539221 -191125132 + MIR SINE MIR 107 161 -101 867 169 0 0 chr1 51539312 51539442 -191124911 + FLAM_A SINE Alu 1 130 -3 205 161 0 0 chr1 51539932 51539963 -191124390 + (TG)n Simple_repeat Simple_repeat 1 31 0 2062 88 6 82 chr1 51540065 51540242 -191124111 - AluSq SINE Alu -18 295 151 2162 117 0 0 chr1 51540242 51540540 -191123813 - AluSx SINE Alu -14 298 1 2062 88 6 82 chr1 51540540 51540681 -191123672 - AluSq SINE Alu -162 151 1 1653 108 131 4 chr1 51540684 51540944 -191123409 - AluSx SINE Alu -19 293 1 200 339 103 63 chr1 51541174 51541475 -191122878 + L2 LINE L2 2951 3263 -9 194 109 65 43 chr1 51543372 51543418 -191120935 + MIR SINE MIR 78 124 -84 2265 42 3 72 chr1 51544118 51544452 -191119901 - AluY SINE Alu 0 311 1 344 130 0 0 chr1 51544903 51544957 -191119396 + Alu SINE Alu 249 302 0 229 304 29 0 chr1 51544957 51545026 -191119327 + GA-rich Low_complexity Low_complexity 2 72 0 662 196 141 83 chr1 51545061 51545337 -191119016 - MER110A LTR ERV1 0 468 177 353 153 56 0 chr1 51545628 51545700 -191118653 - MER110A LTR ERV1 -368 100 25 282 258 20 133 chr1 51546014 51546165 -191118188 + MIR SINE MIR 14 147 -115 293 329 39 32 chr1 51547408 51547563 -191116790 + MIR3 SINE MIR 38 193 -15 203 295 152 0 chr1 51549269 51549374 -191114979 + MIR3 SINE MIR 36 156 -52 193 309 0 0 chr1 51550294 51550349 -191114004 + L3 LINE CR1 1412 1466 -111 1943 138 10 3 chr1 51550427 51550731 -191113622 + AluJo SINE Alu 1 306 -6 235 296 114 23 chr1 51552389 51552521 -191111832 - L2 LINE L2 -208 3064 2921 2107 73 9 76 chr1 51552896 51553226 -191111127 - AluSp SINE Alu -5 308 1 561 288 41 6 chr1 51553934 51554104 -191110249 + L2 LINE L2 2539 2714 -600 1166 136 5 11 chr1 51554104 51554288 -191110065 + AluSx SINE Alu 1 183 -129 1197 119 0 0 chr1 51554343 51554511 -191109842 - AluSc SINE Alu -9 300 133 2159 93 0 17 chr1 51554512 51554813 -191109540 - AluSg SINE Alu -14 296 1 226 352 0 0 chr1 51554816 51554887 -191109466 + L2 LINE L2 2898 2968 -346 1924 138 27 0 chr1 51554948 51555246 -191109107 - AluSg SINE Alu -1 309 4 2024 89 65 0 chr1 51555259 51555550 -191108803 - AluSg SINE Alu 0 310 1 2349 87 3 0 chr1 51555576 51555887 -191108466 - AluSp SINE Alu -1 312 1 247 323 75 11 chr1 51555936 51556029 -191108324 + L2 LINE L2 3137 3235 -37 324 244 64 0 chr1 51556064 51556142 -191108211 - L2 LINE L2 -44 3228 3146 478 249 166 10 chr1 51556252 51556445 -191107908 - MIR SINE MIR 0 262 40 2272 88 3 0 chr1 51556617 51556914 -191107439 - AluSp SINE Alu -15 298 1 345 311 52 21 chr1 51557013 51557256 -191107097 + L2 LINE L2 2759 3006 -266 1980 104 18 0 chr1 51557435 51557735 -191106618 - AluSx SINE Alu 0 305 1 1991 131 0 7 chr1 51557735 51558040 -191106313 - AluSx SINE Alu -9 303 1 268 345 43 9 chr1 51558041 51558157 -191106196 - MIR SINE MIR -111 151 32 262 271 47 28 chr1 51558450 51558557 -191105796 - L3 LINE CR1 -853 724 616 305 292 0 0 chr1 51558736 51558808 -191105545 + L2 LINE L2 3201 3272 0 1989 109 0 4 chr1 51558938 51559213 -191105140 - AluSx SINE Alu -10 302 29 216 222 0 0 chr1 51559463 51559508 -191104845 - MIR SINE MIR -110 152 108 261 323 64 36 chr1 51559604 51559824 -191104529 - L2 LINE L2 -78 3235 3010 262 336 67 9 chr1 51559832 51560130 -191104223 - L2 LINE L2 -1289 2025 1645 180 261 22 0 chr1 51560183 51560229 -191104124 - L2 LINE L2 0 3313 3267 772 146 100 15 chr1 51560270 51560400 -191103953 - AluJo SINE Alu -170 142 2 232 356 34 34 chr1 51560403 51560549 -191103804 - L2 LINE L2 -93 3220 3075 196 305 90 42 chr1 51562061 51562228 -191102125 + L2 LINE L2 3089 3263 -9 233 267 57 9 chr1 51562615 51562720 -191101633 + MIR3 SINE MIR 77 186 -22 2103 102 0 3 chr1 51564221 51564514 -191099839 - AluSc SINE Alu -17 292 1 2389 72 13 0 chr1 51564737 51565042 -191099311 - AluSp SINE Alu -4 309 1 2044 103 29 29 chr1 51565042 51565352 -191099001 - AluSq SINE Alu -3 310 1 188 315 22 22 chr1 51565678 51565767 -191098586 + MIR SINE MIR 4 92 -170 548 143 0 0 chr1 51565780 51565864 -191098489 - AluJ/FLAM SINE Alu -227 85 2 228 296 176 28 chr1 51565876 51565997 -191098356 + MIR SINE MIR 100 246 -16 2002 171 106 23 chr1 51565997 51566288 -191098065 - MER47B DNA MER2_type -1905 418 86 2387 78 0 0 chr1 51566288 51566595 -191097758 - AluSx SINE Alu -5 307 1 2002 171 106 23 chr1 51566595 51566689 -191097664 - MER47B DNA MER2_type -2237 86 1 228 296 176 28 chr1 51566689 51566709 -191097644 + MIR SINE MIR 246 262 0 520 269 120 26 chr1 51567644 51567878 -191096475 + MIR SINE MIR 2 257 -5 203 236 41 122 chr1 51568008 51568131 -191096222 - L2 LINE L2 -603 2711 2599 567 251 66 18 chr1 51568208 51568375 -191095978 + MIR SINE MIR 14 188 -74 702 172 23 31 chr1 51568384 51568512 -191095841 - FRAM SINE Alu -12 164 38 211 259 19 0 chr1 51568526 51568580 -191095773 + MIR SINE MIR 187 241 -21 362 298 299 9 chr1 51568622 51569163 -191095190 - L2 LINE L2 -815 2499 1802 218 382 59 0 chr1 51570631 51570733 -191093620 - MIR SINE MIR -153 109 2 297 312 37 9 chr1 51571132 51571241 -191093112 + MIR3 SINE MIR 91 202 -6 344 345 17 6 chr1 51572046 51572223 -191092130 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 262 266 16 105 chr1 51572225 51572349 -191092004 - L2 LINE L2 -4 3309 3197 680 176 6 0 chr1 51572357 51572522 -191091831 + (TCCA)n Simple_repeat Simple_repeat 3 168 0 190 234 0 0 chr1 51572750 51572797 -191091556 - L2 LINE L2 -221 3051 3005 2246 102 3 0 chr1 51573449 51573754 -191090599 + AluSx SINE Alu 2 307 -5 350 385 6 18 chr1 51574222 51574391 -191089962 + MIR3 SINE MIR 42 208 0 491 283 150 5 chr1 51574398 51574585 -191089768 - MIR SINE MIR -21 241 28 227 261 0 17 chr1 51574877 51574996 -191089357 + (CCCA)n Simple_repeat Simple_repeat 4 120 0 310 313 216 6 chr1 51575763 51575939 -191088414 + MIR SINE MIR 47 259 -3 1780 152 7 14 chr1 51576848 51577144 -191087209 + AluJo SINE Alu 7 300 -12 1911 143 7 0 chr1 51577689 51577983 -191086370 + AluSx SINE Alu 1 296 -16 182 196 36 0 chr1 51578041 51578097 -191086256 + (TTGGGG)n Simple_repeat Simple_repeat 3 60 0 224 213 16 0 chr1 51578121 51578182 -191086171 + (TTGGGG)n Simple_repeat Simple_repeat 2 63 0 660 213 19 0 chr1 51579211 51579371 -191084982 - L1MB5 LINE L1 0 6174 6012 1145 138 51 99 chr1 51579394 51579706 -191084647 - L1ME1 LINE L1 -5 6161 5865 2312 105 0 9 chr1 51579724 51580039 -191084314 - AluSx SINE Alu 0 312 1 475 289 64 37 chr1 51580400 51580587 -191083766 + MIR SINE MIR 46 237 -25 1022 144 0 6 chr1 51581186 51581367 -191082986 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1299 117 0 11 chr1 51581377 51581553 -191082800 - AluSg/x SINE Alu -3 309 134 2092 126 0 7 chr1 51581553 51581854 -191082499 - AluSx SINE Alu -13 299 1 1299 117 0 11 chr1 51581854 51581865 -191082488 - AluSg/x SINE Alu -178 134 124 374 300 19 44 chr1 51581954 51582114 -191082239 + MIR SINE MIR 105 260 -2 192 152 0 0 chr1 51582191 51582224 -191082129 + GA-rich Low_complexity Low_complexity 1 33 0 607 257 108 28 chr1 51582353 51582567 -191081786 - MIR SINE MIR -1 261 31 749 183 0 0 chr1 51583264 51583384 -191080969 + FLAM_C SINE Alu 1 120 -13 758 243 15 29 chr1 51583699 51583905 -191080448 + MIR3 SINE MIR 5 207 -1 36 62 0 0 chr1 51586188 51586252 -191078101 + GC_rich Low_complexity Low_complexity 1 64 0 1572 184 10 10 chr1 51587091 51587390 -191076963 - AluJo SINE Alu -12 300 2 301 194 65 0 chr1 51587925 51587987 -191076366 + MIR SINE MIR 78 143 -65 512 150 406 0 chr1 51587992 51588125 -191076228 + AluSx SINE Alu 1 187 -125 643 276 105 25 chr1 51589148 51589387 -191074966 - MIR SINE MIR -1 261 4 292 272 0 70 chr1 51590015 51590129 -191074224 - MIR SINE MIR -109 153 48 240 312 75 11 chr1 51590482 51590575 -191073778 + MIR SINE MIR 24 122 -86 188 67 33 0 chr1 51590793 51590823 -191073530 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 211 267 0 0 chr1 51590936 51590981 -191073372 + C-rich Low_complexity Low_complexity 4 48 0 252 217 9 17 chr1 51591130 51591245 -191073108 + GA-rich Low_complexity Low_complexity 2 115 0 180 0 0 0 chr1 51591832 51591852 -191072501 + (CAGAG)n Simple_repeat Simple_repeat 2 21 0 826 169 0 7 chr1 51592176 51592312 -191072041 + FAM SINE Alu 1 44 -5 430 316 194 14 chr1 51592318 51592779 -191071574 + L2 LINE L2 2709 3311 -2 201 143 0 0 chr1 51593042 51593077 -191071276 + (CA)n Simple_repeat Simple_repeat 2 36 0 250 309 154 41 chr1 51595401 51595524 -191068829 - MIR SINE MIR -124 138 2 208 326 63 17 chr1 51595564 51595707 -191068646 + MIR SINE MIR 56 202 -60 353 293 36 14 chr1 51596470 51596610 -191067743 + L2 LINE L2 2730 2872 -442 658 301 92 17 chr1 51597389 51597748 -191066605 + LTR16A LTR ERVL 19 404 -46 213 39 0 0 chr1 51599203 51599229 -191065124 + (GGA)n Simple_repeat Simple_repeat 2 27 0 1561 76 0 9 chr1 51599344 51599555 -191064798 + AluY SINE Alu 102 310 -1 220 226 75 0 chr1 51599570 51599623 -191064730 - MIR SINE MIR -168 94 38 2348 136 12 2 chr1 51650425 51650838 -191013515 + L1MA4 LINE L1 5688 6104 -196 1968 87 87 0 chr1 51650840 51651104 -191013249 - AluSx SINE Alu -17 295 9 218 259 12 12 chr1 51651654 51651739 -191012614 + (CA)n Simple_repeat Simple_repeat 1 85 0 762 168 90 0 chr1 51652174 51652329 -191012024 + MER45A DNA AcHobo 7 175 -3 2155 115 0 13 chr1 51652343 51652655 -191011698 - AluSq SINE Alu -5 308 1 481 264 34 7 chr1 51652869 51653017 -191011336 + MIR SINE MIR 111 262 0 847 165 0 0 chr1 51653030 51653163 -191011190 - FLAM_C SINE Alu 0 133 1 305 319 64 7 chr1 51653509 51653650 -191010703 + MIR SINE MIR 57 205 -57 207 195 0 0 chr1 51653940 51653981 -191010372 + (TG)n Simple_repeat Simple_repeat 2 42 0 2000 144 0 3 chr1 51654487 51654778 -191009575 - AluJb SINE Alu -22 290 1 537 295 195 0 chr1 51655040 51655281 -191009072 - L3 LINE CR1 -10 1567 1280 267 307 25 49 chr1 51655320 51655483 -191008870 + L2 LINE L2 2939 3097 -175 265 314 111 7 chr1 51655634 51655787 -191008566 + MIR3 SINE MIR 40 208 0 201 208 38 19 chr1 51657870 51657923 -191006430 + C-rich Low_complexity Low_complexity 4 57 0 379 255 132 0 chr1 51659713 51659819 -191004534 - L2 LINE L2 -2 3311 3192 792 295 190 33 chr1 51659970 51660937 -191003416 + L2 LINE L2 2188 3313 0 1942 156 0 3 chr1 51660955 51661256 -191003097 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr1 51664205 51664226 -191000127 + GC_rich Low_complexity Low_complexity 1 21 0 43 64 0 0 chr1 51664408 51664486 -190999867 + GC_rich Low_complexity Low_complexity 1 78 0 21 89 0 0 chr1 51664645 51664701 -190999652 + GC_rich Low_complexity Low_complexity 1 56 0 218 385 0 0 chr1 51665157 51665235 -190999118 + MIR SINE MIR 184 261 -1 316 253 69 87 chr1 51665301 51665459 -190998894 - MIR3 SINE MIR -28 180 17 511 266 114 0 chr1 51666049 51666207 -190998146 + MIR SINE MIR 83 258 -4 804 153 0 0 chr1 51666817 51666935 -190997418 + AluJb SINE Alu 1 118 -194 21 36 0 0 chr1 51666935 51666963 -190997390 + AT_rich Low_complexity Low_complexity 1 28 0 256 204 19 0 chr1 51666963 51667033 -190997320 - MIR SINE MIR -62 146 96 2150 116 0 3 chr1 51667399 51667701 -190996652 - AluSg SINE Alu -9 301 1 408 277 63 86 chr1 51667729 51668501 -190995852 - L1ME LINE L1 -4942 1319 529 425 342 121 35 chr1 51669270 51669406 -190994947 - L2 LINE L2 -2 3270 3147 2128 102 10 29 chr1 51669406 51669720 -190994633 + AluSx SINE Alu 5 312 0 425 342 121 35 chr1 51669720 51670447 -190993906 - L2 LINE L2 -125 3147 2297 847 187 58 44 chr1 51670469 51670509 -190993844 - MIR SINE MIR -25 237 199 2108 129 0 0 chr1 51670509 51670818 -190993535 + AluSg SINE Alu 1 309 -1 847 187 58 44 chr1 51670818 51671002 -190993351 - MIR SINE MIR -63 199 10 226 337 12 0 chr1 51671138 51671224 -190993129 + MIR3 SINE MIR 74 160 -48 2087 83 36 0 chr1 51671393 51671670 -190992683 - AluSp SINE Alu -11 302 16 589 179 45 0 chr1 51671926 51672038 -190992315 - MLT1C LTR MaLR 0 467 351 306 0 0 0 chr1 51672138 51672172 -190992181 + (CA)n Simple_repeat Simple_repeat 1 34 0 216 311 8 16 chr1 51672280 51672402 -190991951 + (CA)n Simple_repeat Simple_repeat 1 121 0 303 252 19 48 chr1 51672593 51672696 -190991657 + MIR3 SINE MIR 95 194 -14 232 202 64 46 chr1 51673096 51673205 -190991148 + L2 LINE L2 712 822 -2492 616 243 29 92 chr1 51673305 51673335 -190991018 - MIR SINE MIR -37 225 195 2139 88 39 7 chr1 51673335 51673620 -190990733 - AluSc SINE Alu -15 294 1 616 243 29 92 chr1 51673620 51673828 -190990525 - MIR SINE MIR -67 195 2 196 405 78 0 chr1 51673940 51674172 -190990181 + L2 LINE L2 1037 1286 -2028 501 279 152 7 chr1 51674229 51674519 -190989834 + L2 LINE L2 1686 2017 -1297 237 337 112 40 chr1 51674812 51675061 -190989292 + L2 LINE L2 2947 3213 -59 182 333 83 8 chr1 51678084 51678204 -190986149 - L2 LINE L2 -143 3129 3001 186 286 48 0 chr1 51678673 51678736 -190985617 - L2 LINE L2 -360 2954 2889 779 250 22 18 chr1 51679755 51679979 -190984374 + MIR SINE MIR 2 226 -36 201 158 0 26 chr1 51680334 51680372 -190983981 + G-rich Low_complexity Low_complexity 1 37 0 2583 74 3 0 chr1 51680592 51680901 -190983452 + AluSp SINE Alu 1 310 -3 222 37 0 0 chr1 51682274 51682301 -190982052 + (AGGTG)n Simple_repeat Simple_repeat 3 29 0 1729 145 40 4 chr1 51685521 51685797 -190978556 + AluJb SINE Alu 27 312 0 198 0 0 0 chr1 51686674 51686696 -190977657 + (CTGGGG)n Simple_repeat Simple_repeat 6 27 0 267 229 62 21 chr1 51686912 51687008 -190977345 - MIR3 SINE MIR -106 102 3 1456 150 121 19 chr1 51687229 51687536 -190976817 - MER44D DNA MER2_type 0 609 2 967 190 43 9 chr1 51687551 51687762 -190976591 - MIR SINE MIR -1 261 44 679 234 64 5 chr1 51687793 51687981 -190976372 + MIR SINE MIR 56 254 -8 274 310 166 14 chr1 51691237 51691382 -190972971 + MIR SINE MIR 80 246 -16 1069 131 7 0 chr1 51691382 51691535 -190972818 - AluSg/x SINE Alu -22 288 135 274 244 78 35 chr1 51692195 51692310 -190972043 + L2 LINE L2 2940 3059 -213 207 306 130 37 chr1 51693674 51693841 -190970512 + L2 LINE L2 2826 3019 -253 2517 72 0 3 chr1 51693841 51694147 -190970206 + AluY SINE Alu 1 305 -6 207 306 130 37 chr1 51694147 51694195 -190970158 + L2 LINE L2 3019 3061 -211 255 360 65 20 chr1 51695018 51695171 -190969182 - MIR3 SINE MIR -15 193 34 2692 53 0 0 chr1 51695490 51695794 -190968559 + AluY SINE Alu 1 304 -7 2464 90 6 0 chr1 51696196 51696507 -190967846 - AluSp SINE Alu 0 313 1 552 212 0 34 chr1 51697285 51697403 -190966950 - MER81 DNA DNA 0 114 1 238 270 16 16 chr1 51697624 51697687 -190966666 + CT-rich Low_complexity Low_complexity 3 65 0 4827 150 26 24 chr1 51697692 51698701 -190965652 - L1MB4 LINE L1 -2 6178 5172 251 174 0 22 chr1 51698709 51698755 -190965598 - FAM SINE Alu -4 171 127 1411 151 5 5 chr1 51698755 51698967 -190965386 - AluJo SINE Alu -92 220 9 392 152 61 0 chr1 51699010 51699076 -190965277 - AluJ/FRAM SINE Alu -10 292 223 419 255 184 0 chr1 51699082 51699223 -190965130 + MIR SINE MIR 96 262 0 2108 151 0 3 chr1 51699571 51699869 -190964484 + AluJb SINE Alu 1 297 -15 619 176 38 23 chr1 51700823 51700954 -190963399 - AluJo SINE Alu -178 134 2 221 232 36 18 chr1 51702607 51702663 -190961690 + MIR SINE MIR 201 257 -5 2037 133 10 7 chr1 51702994 51703302 -190961051 + AluJo SINE Alu 1 309 -3 2232 88 10 24 chr1 51703955 51704250 -190960103 - AluSx SINE Alu -21 291 1 191 333 13 27 chr1 51704324 51704399 -190959954 + L2 LINE L2 3194 3267 -5 653 305 29 42 chr1 51704719 51704958 -190959395 - MIR SINE MIR -3 259 24 2423 94 3 0 chr1 51705466 51705765 -190958588 - AluSx SINE Alu -12 300 1 967 258 12 27 chr1 51705819 51706075 -190958278 - MIR SINE MIR -2 260 9 2135 112 7 7 chr1 51708929 51709244 -190955109 + AluSx SINE Alu 1 315 0 310 307 86 7 chr1 51709821 51709961 -190954392 + L3 LINE CR1 1355 1505 -72 1094 162 0 32 chr1 51710319 51710489 -190953864 - AluSg/x SINE Alu -11 301 136 2212 84 17 14 chr1 51710489 51710786 -190953567 - AluSx SINE Alu -14 298 1 1094 162 0 32 chr1 51710786 51710800 -190953553 - AluSg/x SINE Alu -176 136 123 697 247 39 0 chr1 51711270 51711452 -190952901 - MER5A DNA MER1_type 0 189 1 285 300 73 9 chr1 51711492 51711602 -190952751 - MIR3 SINE MIR -86 122 6 281 350 61 18 chr1 51711753 51711916 -190952437 - MIR SINE MIR -61 201 32 190 250 54 18 chr1 51711943 51711999 -190952354 - L2 LINE L2 -5 3267 3210 * 1100 185 38 0 chr1 51711967 51712178 -190952175 - MIR SINE MIR -25 237 19 196 268 0 0 chr1 51712604 51712645 -190951708 - L2 LINE L2 -8 3305 3265 825 165 0 0 chr1 51712672 51712793 -190951560 + FLAM_C SINE Alu 1 121 -22 224 314 86 0 chr1 51712803 51712873 -190951480 - L2 LINE L2 -89 3183 3108 2394 101 3 0 chr1 51712963 51713271 -190951082 + AluSc SINE Alu 1 309 0 335 228 51 0 chr1 51713326 51713405 -190950948 - L2 LINE L2 -4 3268 3186 222 62 0 0 chr1 51713921 51713953 -190950400 + (CA)n Simple_repeat Simple_repeat 2 33 0 210 71 0 0 chr1 51716222 51716250 -190948103 + (T)n Simple_repeat Simple_repeat 1 28 0 2466 91 3 0 chr1 51716701 51717009 -190947344 + AluSx SINE Alu 1 309 -3 193 256 100 33 chr1 51718189 51718279 -190946074 + L2 LINE L2 3158 3253 -19 2259 109 13 7 chr1 51718511 51718815 -190945538 - AluSx SINE Alu -6 306 1 344 271 25 50 chr1 51719056 51719240 -190945113 + MIR SINE MIR 12 191 -63 2507 77 3 0 chr1 51719241 51719540 -190944813 + AluSp SINE Alu 1 300 -13 365 253 73 79 chr1 51719701 51719893 -190944460 - MIR SINE MIR -55 207 15 338 183 146 0 chr1 51719900 51719982 -190944371 + L1ME4a LINE L1 6006 6099 -22 22 0 0 0 chr1 51720199 51720221 -190944132 + AT_rich Low_complexity Low_complexity 1 22 0 2705 27 0 3 chr1 51720231 51720531 -190943822 + AluY SINE Alu 1 299 -12 332 315 0 57 chr1 51720598 51720755 -190943598 + MIR SINE MIR 64 210 -52 277 319 134 61 chr1 51720760 51721170 -190943183 - L2 LINE L2 0 3272 2833 944 213 54 67 chr1 51722096 51722335 -190942018 - MIR SINE MIR -24 238 3 1412 248 123 37 chr1 51723409 51723664 -190940689 - Charlie1a DNA MER1_type -2257 504 272 2124 155 0 0 chr1 51723664 51723968 -190940385 + AluSx SINE Alu 1 304 -8 1412 248 123 37 chr1 51723968 51724176 -190940177 - Charlie1a DNA MER1_type -2489 272 1 221 208 113 0 chr1 51724462 51724515 -190939838 + L2 LINE L2 3162 3220 -52 1290 160 10 0 chr1 51724919 51725119 -190939234 - AluJb SINE Alu -26 286 85 196 301 108 0 chr1 51725143 51725226 -190939127 + L2 LINE L2 3170 3261 -11 2365 101 10 0 chr1 51725282 51725590 -190938763 + AluSx SINE Alu 1 311 -1 297 136 0 0 chr1 51726155 51726199 -190938154 - FLAM SINE Alu -7 126 83 1788 145 30 0 chr1 51726418 51726687 -190937666 + AluJb SINE Alu 1 277 -35 287 287 128 0 chr1 51727184 51727278 -190937075 + L2 LINE L2 3163 3268 -4 1882 145 14 0 chr1 51727477 51727753 -190936600 - AluJb SINE Alu -32 280 1 1470 221 30 3 chr1 51727826 51728157 -190936196 - MER58B DNA MER1_type -1 340 1 809 295 27 18 chr1 51728244 51728468 -190935885 + MIR SINE MIR 21 246 -16 193 301 53 53 chr1 51729129 51729242 -190935111 + L2 LINE L2 2709 2821 -493 328 271 98 16 chr1 51729375 51729497 -190934856 + L2 LINE L2 3141 3272 0 417 296 35 98 chr1 51729584 51729871 -190934482 + L3b LINE CR1 1110 1378 -205 22 35 0 0 chr1 51730244 51730273 -190934080 + AT_rich Low_complexity Low_complexity 1 29 0 1172 193 81 0 chr1 51730277 51730500 -190933853 - MIR SINE MIR -11 251 11 566 259 23 8 chr1 51730649 51730780 -190933573 + MIR SINE MIR 130 262 0 563 249 112 43 chr1 51731375 51731608 -190932745 + MIR SINE MIR 7 255 -7 239 284 140 138 chr1 51731730 51732079 -190932274 + L2 LINE L2 2919 3268 -4 251 229 0 49 chr1 51732478 51732539 -190931814 + MIR SINE MIR 204 261 -1 232 278 49 111 chr1 51732567 51732626 -190931727 + MIR3 SINE MIR 37 98 -110 2401 84 0 0 chr1 51732626 51732910 -190931443 - AluSx SINE Alu -17 295 12 232 278 49 111 chr1 51732910 51733012 -190931341 + MIR3 SINE MIR 98 188 -20 355 300 101 74 chr1 51733475 51733834 -190930519 - L2 LINE L2 0 3272 2897 2345 107 0 0 chr1 51733834 51734132 -190930221 + AluSx SINE Alu 1 298 -14 355 300 101 74 chr1 51734132 51734229 -190930124 - L2 LINE L2 -375 2897 2804 1380 85 134 0 chr1 51734265 51734466 -190929887 - MER30 DNA MER1_type -2 228 1 575 323 86 13 chr1 51735123 51735355 -190928998 - MIR SINE MIR 0 262 14 1976 144 17 0 chr1 51737309 51737608 -190926745 - AluJb SINE Alu -8 304 1 235 243 186 0 chr1 51737959 51738029 -190926324 + L3 LINE CR1 1381 1463 -114 263 283 0 0 chr1 51738180 51738240 -190926113 + MIR SINE MIR 182 241 -21 243 250 119 69 chr1 51738262 51738422 -190925931 - MIR3 SINE MIR -8 200 33 2658 61 0 3 chr1 51738794 51739106 -190925247 + AluY SINE Alu 1 311 0 411 289 40 20 chr1 51739901 51740053 -190924300 + MIR3 SINE MIR 39 193 -15 249 213 0 0 chr1 51740829 51740876 -190923477 - L2 LINE L2 0 3313 3267 2217 114 23 0 chr1 51742064 51742370 -190921983 - AluSp SINE Alu 0 313 1 390 303 70 32 chr1 51742853 51743038 -190921315 - MIR SINE MIR -30 232 41 200 174 22 22 chr1 51743438 51743484 -190920869 + MIR SINE MIR 102 147 -61 1840 110 51 0 chr1 51744116 51744370 -190919983 + AluSq SINE Alu 47 313 0 336 230 68 27 chr1 51744388 51744499 -190919854 + MIR SINE MIR 19 153 -62 198 267 0 0 chr1 51745804 51745849 -190918504 - L2 LINE L2 -7 3306 3262 345 211 3 0 chr1 51745961 51746040 -190918313 + MIR SINE MIR 11 91 -117 215 228 0 141 chr1 51747106 51747198 -190917155 + L2 LINE L2 3170 3248 -24 437 197 20 132 chr1 51747218 51747370 -190916983 - MIR3 SINE MIR -14 194 60 25 65 0 0 chr1 51748549 51748595 -190915758 + GC_rich Low_complexity Low_complexity 1 46 0 297 276 138 0 chr1 51748879 51748966 -190915387 + L2 LINE L2 3174 3272 0 2201 124 9 12 chr1 51749551 51749889 -190914464 + L1PA15 LINE L1 5825 6161 -4 587 249 106 21 chr1 51750246 51750689 -190913664 - LTR33 LTR ERVL 0 521 22 471 263 39 6 chr1 51750737 51750916 -190913437 - L1M4 LINE L1 -3190 2956 2772 294 247 14 0 chr1 51751563 51751636 -190912717 + MIR SINE MIR 74 147 -61 364 277 45 11 chr1 51752104 51752239 -190912114 + MIR SINE MIR 72 206 -56 196 380 28 0 chr1 51752274 51752345 -190912008 + L3 LINE CR1 1246 1318 -259 2073 121 48 0 chr1 51753156 51753446 -190910907 + AluSx SINE Alu 1 304 -8 308 177 0 65 chr1 51753512 51753574 -190910779 - L2 LINE L2 0 3272 3215 280 280 65 11 chr1 51753707 51753800 -190910553 - MIR3 SINE MIR -19 189 92 2234 88 32 3 chr1 51754549 51754834 -190909519 - AluSx SINE Alu -19 293 1 213 246 33 0 chr1 51754882 51754943 -190909410 - MIR SINE MIR -143 119 57 1716 165 4 8 chr1 51754948 51755214 -190909139 + AluSx SINE Alu 11 275 -37 513 0 0 0 chr1 51755226 51755283 -190909070 + (CAAG)n Simple_repeat Simple_repeat 2 58 0 337 238 25 25 chr1 51756450 51756530 -190907823 + MIR SINE MIR 68 147 -61 364 313 11 67 chr1 51756547 51756605 -190907748 + MER5A DNA MER1_type 19 79 -110 418 110 96 0 chr1 51756605 51756678 -190907675 + MADE1 DNA Mariner 1 80 0 364 313 11 67 chr1 51756678 51756798 -190907555 + MER5A DNA MER1_type 79 187 -2 593 299 46 0 chr1 51757277 51757451 -190906902 - MIR SINE MIR -45 217 36 233 176 24 153 chr1 51757472 51757508 -190906845 + MIR SINE MIR 118 138 -124 2390 87 6 3 chr1 51757508 51757820 -190906533 + AluSq SINE Alu 1 313 0 233 176 24 153 chr1 51757820 51757868 -190906485 + MIR SINE MIR 138 191 -71 189 303 112 45 chr1 51758281 51758370 -190905983 + L3 LINE CR1 710 804 -773 491 330 90 41 chr1 51758573 51759039 -190905314 + L3 LINE CR1 1044 1532 -45 1989 109 69 0 chr1 51759227 51759503 -190904850 - AluSc SINE Alu -14 295 1 2264 81 39 0 chr1 51759518 51759802 -190904551 - AluSx SINE Alu -17 295 1 2340 70 3 3 chr1 51759811 51760096 -190904257 - AluY SINE Alu -16 295 11 356 347 129 29 chr1 51760438 51760843 -190903510 - L2 LINE L2 -16 3256 2777 2170 130 10 0 chr1 51761332 51761631 -190902722 - AluSx SINE Alu -10 302 1 470 172 81 0 chr1 51761711 51761810 -190902543 + MIR SINE MIR 156 262 0 6359 113 98 34 chr1 51761824 51762757 -190901596 - Tigger3b DNA MER2_type -1798 1230 207 2066 145 0 7 chr1 51762757 51763053 -190901300 - AluJo SINE Alu -18 294 1 6359 113 98 34 chr1 51763053 51763275 -190901078 - Tigger3b DNA MER2_type -2821 207 1 658 287 234 12 chr1 51763582 51763916 -190900437 + L2 LINE L2 2903 3310 -3 205 365 104 0 chr1 51764155 51764251 -190900102 + L2 LINE L2 3159 3264 -8 453 221 157 0 chr1 51764454 51764594 -190899759 - L2 LINE L2 -4 3309 3148 468 281 10 85 chr1 51764716 51764915 -190899438 + MER5A DNA MER1_type 1 184 -5 490 266 43 69 chr1 51765056 51765244 -190899109 - MIR SINE MIR -73 189 7 2023 136 7 19 chr1 51766025 51766335 -190898018 + AluSx SINE Alu 1 306 -6 180 251 151 136 chr1 51767750 51768001 -190896352 + L2 LINE L2 3018 3272 0 1902 191 144 39 chr1 51768202 51768330 -190896023 + MLT1F1 LTR MaLR 1 114 -453 543 189 180 0 chr1 51768330 51768441 -190895912 + FLAM_A SINE Alu 1 131 -2 1902 191 144 39 chr1 51768441 51768825 -190895528 + MLT1F1 LTR MaLR 114 567 0 1147 157 0 0 chr1 51768922 51769094 -190895259 + FRAM SINE Alu 1 166 -10 524 271 60 13 chr1 51769464 51769615 -190894738 - MIR3 SINE MIR -13 195 38 2416 53 7 17 chr1 51770029 51770329 -190894024 + AluY SINE Alu 1 297 -14 279 363 27 54 chr1 51770561 51770894 -190893459 + L2 LINE L2 2464 2787 -527 252 86 0 0 chr1 51770913 51770948 -190893405 + (CA)n Simple_repeat Simple_repeat 2 36 0 365 312 64 14 chr1 51770968 51771109 -190893244 + L2 LINE L2 2904 3051 -221 460 232 237 16 chr1 51771699 51771893 -190892460 + L2 LINE L2 840 1076 -2238 599 189 67 105 chr1 51771896 51772022 -190892331 - MER58 DNA MER1_type -2191 229 114 2061 101 0 78 chr1 51772022 51772365 -190891988 + AluSx SINE Alu 1 319 0 599 189 67 105 chr1 51772365 51772475 -190891878 - MER58 DNA MER1_type -2306 114 1 3117 209 98 32 chr1 51772475 51772765 -190891588 + L2 LINE L2 1304 1573 -1741 1993 170 0 3 chr1 51772765 51773077 -190891276 - AluSx SINE Alu -1 311 1 3117 209 98 32 chr1 51773077 51773808 -190890545 + L2 LINE L2 1573 2425 -889 1035 185 108 77 chr1 51774392 51774717 -190889636 - MER46C DNA MER2_type -3 335 1 333 219 146 0 chr1 51775848 51775930 -190888423 + L2 LINE L2 3182 3275 -38 611 225 188 9 chr1 51775934 51776147 -190888206 + MIR SINE MIR 10 260 -2 26 101 0 0 chr1 51776315 51776404 -190887949 + AT_rich Low_complexity Low_complexity 1 89 0 1767 162 10 7 chr1 51777072 51777368 -190886985 - AluJo SINE Alu -15 297 1 1590 154 124 4 chr1 51777598 51777857 -190886496 + AluJo SINE Alu 1 290 -12 355 271 91 20 chr1 51777864 51778063 -190886290 - L1ME3A LINE L1 -215 5955 5743 3218 225 66 24 chr1 51778397 51778710 -190885643 - L1ME1 LINE L1 -5 6161 5863 1652 214 73 31 chr1 51778710 51779135 -190885218 + LTR47B LTR ERVL 1 443 0 3218 225 66 24 chr1 51779135 51779202 -190885151 - L1ME1 LINE L1 -303 5863 5800 252 86 0 0 chr1 51779202 51779237 -190885116 + (CA)n Simple_repeat Simple_repeat 2 36 0 3218 225 66 24 chr1 51779237 51779714 -190884639 - L1ME1 LINE L1 -366 5800 5267 305 125 35 138 chr1 51779714 51779802 -190884551 - L1M3 LINE L1 -425 5746 5657 2040 147 0 0 chr1 51779815 51780114 -190884239 - AluSx SINE Alu -9 303 5 877 182 216 0 chr1 51780120 51780296 -190884057 - AluJb SINE Alu -17 295 82 290 289 0 0 chr1 51780296 51780393 -190883960 - L1ME1 LINE L1 -1017 5129 5033 1723 174 3 7 chr1 51780402 51780695 -190883658 + AluSx SINE Alu 1 292 -20 1306 118 21 0 chr1 51780697 51780884 -190883469 + AluSg/x SINE Alu 112 302 -10 1442 191 52 10 chr1 51780885 51781194 -190883159 - L1ME1 LINE L1 -1129 5017 4696 369 143 0 0 chr1 51781298 51781354 -190882999 + (TG)n Simple_repeat Simple_repeat 1 56 0 578 300 25 10 chr1 51782037 51782237 -190882116 + MIR SINE MIR 12 214 -48 227 211 0 14 chr1 51782367 51782438 -190881915 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 253 250 16 16 chr1 51782848 51782912 -190881441 + MIR3 SINE MIR 112 175 -33 460 270 88 7 chr1 51783102 51783250 -190881103 - MLT1I LTR MaLR -249 160 1 182 136 296 0 chr1 51783749 51783793 -190880560 - L2 LINE L2 -2 3270 3214 * 590 260 71 31 chr1 51783791 51783987 -190880366 + MIR SINE MIR 16 219 -43 337 265 49 37 chr1 51784034 51784196 -190880157 + L1ME LINE L1 2 165 -5905 536 253 73 95 chr1 51784433 51785205 -190879148 + L1ME LINE L1 529 1319 -4942 2005 143 0 3 chr1 51785233 51785526 -190878827 + AluSx SINE Alu 1 292 -20 1306 118 21 0 chr1 51785528 51785715 -190878638 + AluSg/x SINE Alu 112 302 -10 2093 193 47 50 chr1 51785716 51786185 -190878168 - L1M4 LINE L1 -1129 5017 4549 1661 197 0 7 chr1 51786185 51786485 -190877868 + AluJo SINE Alu 6 303 -9 2093 193 47 50 chr1 51786485 51786569 -190877784 - L1M4 LINE L1 -1597 4549 4466 726 175 0 0 chr1 51786801 51786915 -190877438 + FLAM_C SINE Alu 22 135 -8 4055 103 42 15 chr1 51786915 51787527 -190876826 + L1MA5 LINE L1 5497 6125 -175 6464 19 0 0 chr1 51787537 51788230 -190876123 - L1PA3 LINE L1 0 6155 5463 2096 19 0 3 chr1 51788230 51788554 -190875799 + L1PA3 LINE L1 5152 5474 -681 1349 92 16 0 chr1 51788554 51788734 -190875619 + L1MA5 LINE L1 6111 6298 -2 2096 19 0 3 chr1 51788734 51788753 -190875600 + L1P1 LINE L1 5474 5492 -663 524 304 98 18 chr1 51790772 51790996 -190873357 + MIR SINE MIR 21 262 0 2616 97 21 34 chr1 51791002 51791054 -190873299 - THE1C LTR MaLR 0 375 324 3198 65 10 0 chr1 51791054 51791471 -190872882 - L1PA6 LINE L1 0 6154 5763 2616 97 21 34 chr1 51791471 51791798 -190872555 - THE1C LTR MaLR -51 324 1 288 234 139 15 chr1 51792003 51792140 -190872213 - L1ME4a LINE L1 -40 6081 5928 287 385 41 18 chr1 51792200 51792369 -190871984 + L2 LINE L2 2915 3087 -185 196 265 255 0 chr1 51792475 51792577 -190871776 + L2 LINE L2 3180 3307 -6 512 290 37 55 chr1 51792855 51793072 -190871281 - L3 LINE CR1 -432 1145 933 211 330 155 10 chr1 51793418 51793515 -190870838 + L2 LINE L2 3160 3270 -2 683 251 112 11 chr1 51793577 51793764 -190870589 + MIR SINE MIR 36 241 -21 203 281 18 0 chr1 51794037 51794094 -190870259 - L2 LINE L2 -3 3310 3253 * 1023 234 39 4 chr1 51794060 51794291 -190870062 - MIR SINE MIR -21 241 3 21 0 0 0 chr1 51794759 51794780 -190869573 + AT_rich Low_complexity Low_complexity 1 21 0 24 78 0 13 chr1 51795397 51795448 -190868905 + AT_rich Low_complexity Low_complexity 1 52 -24 2298 103 0 3 chr1 51795448 51795758 -190868595 + AluSg SINE Alu 1 309 -1 24 78 0 13 chr1 51795758 51795783 -190868570 + AT_rich Low_complexity Low_complexity 52 76 0 2200 117 3 3 chr1 51796505 51796812 -190867541 - AluSx SINE Alu -2 310 4 499 159 123 88 chr1 51797023 51797193 -190867160 - MER104 DNA MER2_type -4 176 1 1289 234 161 84 chr1 51797261 51797615 -190866738 + MER20B DNA MER1_type 23 348 -435 2227 91 3 14 chr1 51797615 51797912 -190866441 - AluSx SINE Alu -16 296 3 1289 234 161 84 chr1 51797912 51798261 -190866092 + MER20B DNA MER1_type 348 780 -3 2493 69 0 0 chr1 51798428 51798732 -190865621 - AluY SINE Alu -7 304 1 2064 109 0 0 chr1 51798997 51799264 -190865089 - AluSq SINE Alu -45 268 2 7937 34 24 0 chr1 51799318 51800237 -190864116 - L1PA4 LINE L1 -1 6154 5235 798 208 51 23 chr1 51800482 51800698 -190863655 - MER112 DNA MER1_type -38 222 1 1019 239 65 8 chr1 51800767 51801014 -190863339 - MIR SINE MIR 0 262 2 1046 240 0 0 chr1 51801216 51801412 -190862941 + MER58A DNA MER1_type 29 224 0 259 312 97 0 chr1 51802199 51802292 -190862061 - L3 LINE CR1 -31 1546 1445 381 265 51 10 chr1 51802993 51803091 -190861262 - L2 LINE L2 -49 3223 3122 206 315 45 34 chr1 51803133 51803222 -190861131 + L2 LINE L2 2898 2987 -285 * 209 266 6 107 chr1 51803217 51803386 -190860967 - L2 LINE L2 -1525 1789 1638 235 360 29 14 chr1 51803645 51803784 -190860569 - L2 LINE L2 -613 2701 2561 288 235 148 26 chr1 51803999 51804114 -190860239 + MIR3 SINE MIR 36 164 -44 280 222 102 82 chr1 51804197 51804342 -190860011 + MIR3 SINE MIR 46 179 -29 501 254 8 0 chr1 51804405 51804531 -190859822 + MIR SINE MIR 56 182 -80 23 0 0 0 chr1 51804903 51804926 -190859427 + GC_rich Low_complexity Low_complexity 1 23 0 340 209 77 44 chr1 51805343 51805434 -190858919 - MIR SINE MIR -90 172 79 321 289 209 24 chr1 51805904 51806115 -190858238 + L2 LINE L2 2897 3146 -167 2725 237 115 9 chr1 51806142 51806579 -190857774 - L2 LINE L2 -103 3210 2821 657 193 9 18 chr1 51806579 51806693 -190857660 - MER81 DNA DNA -1 113 1 2725 237 115 9 chr1 51806693 51807276 -190857077 - L2 LINE L2 -492 2821 2020 427 259 100 24 chr1 51807312 51807482 -190856871 + L3 LINE CR1 1260 1442 -135 289 273 40 57 chr1 51807631 51807858 -190856495 - L2 LINE L2 -219 3053 2831 1924 131 0 0 chr1 51808781 51809049 -190855304 - AluSx SINE Alu -14 298 31 180 0 0 0 chr1 51815355 51815375 -190848978 + (A)n Simple_repeat Simple_repeat 1 20 0 784 168 0 0 chr1 51815376 51815489 -190848864 + FLAM_C SINE Alu 2 114 -29 289 261 8 149 chr1 51815763 51815836 -190848517 - MIR SINE MIR -78 130 48 1967 141 0 7 chr1 51815836 51816134 -190848219 - AluSx SINE Alu -13 299 4 1844 133 21 4 chr1 51816135 51816414 -190847939 - AluSx SINE Alu 0 312 29 289 261 8 149 chr1 51816414 51816472 -190847881 - MIR SINE MIR -159 49 16 4196 146 17 46 chr1 51816526 51817291 -190847062 + L1MB7 LINE L1 5426 6168 -16 1960 130 46 3 chr1 51817508 51817793 -190846560 - AluJo SINE Alu -15 297 1 345 188 260 0 chr1 51818607 51818703 -190845650 - L2 LINE L2 0 3313 3193 269 346 103 19 chr1 51819108 51819215 -190845138 + L2 LINE L2 3139 3254 -18 1744 143 12 4 chr1 51819276 51819534 -190844819 + AluSx SINE Alu 1 260 -52 597 259 184 15 chr1 51819544 51819745 -190844608 + MIR SINE MIR 20 254 -8 200 300 50 67 chr1 51821155 51821275 -190843078 + L2 LINE L2 3196 3313 0 397 354 45 32 chr1 51822919 51823165 -190841188 + L2 LINE L2 3012 3260 -12 269 196 20 0 chr1 51824321 51824372 -190839981 + MIR3 SINE MIR 121 172 -36 290 248 90 60 chr1 51824622 51824755 -190839598 + MIR SINE MIR 65 201 -61 267 257 43 14 chr1 51827214 51827284 -190837069 - MIR SINE MIR -117 91 20 572 161 124 27 chr1 51827722 51827903 -190836450 - MLT1H LTR MaLR -2 547 340 448 202 71 10 chr1 51827962 51828061 -190836292 + MLT1H1 LTR MaLR 443 547 -8 2535 214 65 51 chr1 51828507 51829250 -190835103 - L1ME1 LINE L1 -9 6157 5405 304 192 14 41 chr1 51830301 51830374 -190833979 + L2 LINE L2 3202 3272 0 7897 36 9 0 chr1 51830398 51831766 -190832587 + L1PA5 LINE L1 4776 6152 -2 1506 174 0 0 chr1 51832279 51832514 -190831839 - AluJb SINE Alu -77 235 1 299 205 27 80 chr1 51832514 51832626 -190831727 - L1ME LINE L1 -598 5572 5467 262 208 139 0 chr1 51834109 51834181 -190830172 - L2 LINE L2 -18 3254 3173 483 251 112 28 chr1 51834188 51834367 -190829986 - L2 LINE L2 0 3313 3120 2069 131 7 3 chr1 51834389 51834687 -190829666 - AluSx SINE Alu -13 299 1 696 300 116 56 chr1 51834897 51835621 -190828732 - L2 LINE L2 -75 3238 2440 306 288 30 30 chr1 51835889 51836021 -190828332 + L2 LINE L2 3117 3248 -65 261 273 45 73 chr1 51836214 51836237 -190828116 + MIR SINE MIR 153 175 -87 2549 186 106 12 chr1 51836237 51836754 -190827599 + MLT1F1 LTR MaLR 2 567 0 261 273 45 73 chr1 51836754 51836840 -190827513 + MIR SINE MIR 175 259 -3 535 291 39 25 chr1 51837038 51837311 -190827042 + L1MC/D LINE L1 5476 5758 -474 198 0 0 0 chr1 51837491 51837513 -190826840 + (GA)n Simple_repeat Simple_repeat 1 22 0 243 103 0 0 chr1 51837513 51837552 -190826801 + (TG)n Simple_repeat Simple_repeat 1 39 0 581 272 52 12 chr1 51838993 51839201 -190825152 + MIR SINE MIR 46 258 -4 245 259 0 0 chr1 51839201 51839255 -190825098 + (CAT)n Simple_repeat Simple_repeat 1 54 0 384 291 62 116 chr1 51839473 51839520 -190824833 + L2 LINE L2 2897 2945 -327 3063 213 34 28 chr1 51839520 51839648 -190824705 + MER82 DNA MER2_type 2 128 -525 2424 78 0 3 chr1 51839648 51839942 -190824411 - AluSg SINE Alu -17 293 1 3063 213 34 28 chr1 51839942 51840461 -190823892 + MER82 DNA MER2_type 128 653 0 384 291 62 116 chr1 51840461 51840705 -190823648 + L2 LINE L2 2945 3172 -100 1775 144 6 80 chr1 51840707 51841033 -190823320 + AluJb SINE Alu 3 304 -8 928 164 148 26 chr1 51841035 51841224 -190823129 + MLT1A1 LTR MaLR 154 365 0 266 236 79 22 chr1 51841483 51841572 -190822781 + MLT1L LTR MaLR 520 613 -2 3233 160 65 24 chr1 51841928 51842399 -190821954 + MER6A DNA MER2_type 2 503 -362 1976 149 0 7 chr1 51842399 51842701 -190821652 - AluJo SINE Alu -12 300 1 3233 160 65 24 chr1 51842701 51842809 -190821544 + MER6A DNA MER2_type 503 605 0 559 249 51 28 chr1 51843329 51843506 -190820847 - MER112 DNA MER1_type -79 181 1 569 244 101 21 chr1 51844815 51845020 -190819333 + MIR SINE MIR 28 246 -16 24 32 0 0 chr1 51845684 51845715 -190818638 + AT_rich Low_complexity Low_complexity 1 31 0 387 344 138 40 chr1 51845760 51846158 -190818195 + L2 LINE L2 2824 3260 -12 2107 117 0 17 chr1 51846240 51846561 -190817792 + AluSx SINE Alu 1 312 0 4009 112 53 40 chr1 51846750 51847095 -190817258 - L1MA5A LINE L1 -10 6287 5929 1690 166 17 3 chr1 51847095 51847384 -190816969 - AluJo SINE Alu -17 295 3 4009 112 53 40 chr1 51847384 51847684 -190816669 - L1MA5A LINE L1 -368 5929 5634 258 301 187 24 chr1 51848370 51848536 -190815817 - L2 LINE L2 0 3272 3080 424 285 32 32 chr1 51848565 51848688 -190815665 - MIR SINE MIR -67 141 19 2076 115 0 31 chr1 51849260 51849583 -190814770 + AluSq SINE Alu 1 313 0 189 250 21 0 chr1 51849969 51850017 -190814336 + L2 LINE L2 3262 3310 -3 180 0 0 0 chr1 51850964 51850984 -190813369 + (A)n Simple_repeat Simple_repeat 1 20 0 1598 156 25 56 chr1 51851044 51851364 -190812989 + AluJb SINE Alu 1 310 -2 230 252 329 19 chr1 51851873 51852028 -190812325 + MIR SINE MIR 60 262 0 2288 108 3 7 chr1 51852501 51852808 -190811545 + AluSx SINE Alu 2 307 -5 192 97 0 0 chr1 51855577 51855608 -190808745 + (CGG)n Simple_repeat Simple_repeat 2 32 0 1271 208 256 58 chr1 51856036 51856153 -190808200 - L2 LINE L2 0 3313 3220 1028 167 16 16 chr1 51856153 51856339 -190808014 + MER53 DNA DNA 3 188 -1 1271 208 256 58 chr1 51856339 51856744 -190807609 - L2 LINE L2 -93 3220 2897 2229 115 3 0 chr1 51856744 51857102 -190807251 + AluSc SINE Alu 1 309 0 1271 208 256 58 chr1 51857102 51857496 -190806857 - L2 LINE L2 -416 2897 2203 447 277 60 42 chr1 51857696 51857862 -190806491 + MIR SINE MIR 2 170 -92 741 200 65 45 chr1 51857933 51858133 -190806220 - MER3 DNA MER1_type 0 209 6 220 232 37 37 chr1 51858829 51858911 -190805442 + MIR SINE MIR 85 166 -96 197 234 223 32 chr1 51859137 51859231 -190805122 - MIR SINE MIR -76 132 21 375 258 0 97 chr1 51859261 51859385 -190804968 + MIR SINE MIR 48 159 -103 418 222 30 9 chr1 51859385 51859546 -190804807 - MER45C DNA AcHobo 0 953 732 1306 242 0 30 chr1 51859668 51859937 -190804416 - MER45C DNA AcHobo -692 261 1 259 195 0 0 chr1 51859974 51860015 -190804338 + MIR SINE MIR 219 259 -3 382 276 0 64 chr1 51860298 51860454 -190803899 - MIR3 SINE MIR -62 146 1 473 256 44 31 chr1 51861345 51861505 -190802848 + MIR SINE MIR 28 189 -73 318 50 0 0 chr1 51862078 51862118 -190802235 + (TG)n Simple_repeat Simple_repeat 1 40 0 204 40 0 0 chr1 51862212 51862237 -190802116 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 550 268 156 28 chr1 51862249 51862499 -190801854 - L2 LINE L2 -33 3280 2999 2490 262 52 57 chr1 51862520 51864003 -190800350 + L1MEc LINE L1 59 1656 -4740 3814 96 14 4 chr1 51864003 51864522 -190799831 + L1PA13 LINE L1 5640 6163 0 2490 262 52 57 chr1 51864522 51864533 -190799820 + L1MEc LINE L1 1656 1666 -4730 15320 126 24 116 chr1 51864583 51867971 -190796382 + L1PA7 LINE L1 12 3087 -3059 1225 35 0 0 chr1 51867971 51868112 -190796241 + L1PA6 LINE L1 6008 6149 -5 17464 85 11 0 chr1 51868129 51871191 -190793162 + L1PA7 LINE L1 3072 6147 -7 3737 135 16 5 chr1 51871191 51871826 -190792527 + L1 LINE L1 4404 5048 -1098 347 219 36 88 chr1 51871869 51872006 -190792347 - L2 LINE L2 -1107 2207 2078 12406 111 34 22 chr1 51872947 51873890 -190790463 - Tigger1 DNA MER2_type 0 2418 1488 1863 186 0 0 chr1 51873890 51874202 -190790151 - AluJb SINE Alu 0 312 1 12406 111 34 22 chr1 51874202 51875245 -190789108 - Tigger1 DNA MER2_type -930 1488 407 2075 130 0 0 chr1 51875245 51875530 -190788823 - AluSx SINE Alu -27 285 1 12406 111 34 22 chr1 51875530 51875943 -190788410 - Tigger1 DNA MER2_type -2011 407 1 201 188 42 42 chr1 51875951 51875999 -190788354 + L2 LINE L2 3035 3082 -190 252 218 35 0 chr1 51876095 51876182 -190788171 + CT-rich Low_complexity Low_complexity 2 91 0 1330 306 30 36 chr1 51876373 51877011 -190787342 - L1ME3A LINE L1 -219 5951 5318 2226 121 3 0 chr1 51877042 51877348 -190787005 - AluSg SINE Alu -1 309 3 1167 265 162 21 chr1 51877381 51878084 -190786269 - L1ME3A LINE L1 -880 5266 4465 920 276 84 51 chr1 51878096 51878607 -190785746 - L1MC4 LINE L1 -2 8040 7513 2287 96 7 0 chr1 51880117 51880409 -190783944 + AluSq SINE Alu 1 294 -19 439 219 104 67 chr1 51880723 51880887 -190783466 - L1MC4 LINE L1 -529 7513 7344 * 530 325 16 32 chr1 51880877 51881191 -190783162 - L1ME3A LINE L1 -1662 4484 4176 294 312 46 0 chr1 51881463 51881572 -190782781 - MIR SINE MIR -115 147 34 26 30 0 0 chr1 51881673 51881706 -190782647 + AT_rich Low_complexity Low_complexity 1 33 0 220 229 16 0 chr1 51881791 51881852 -190782501 - MIR SINE MIR -56 206 145 753 211 21 14 chr1 51881886 51882028 -190782325 - AluJb SINE Alu -38 274 132 449 214 104 32 chr1 51883023 51883177 -190781176 - MER103 DNA DNA 0 166 2 209 271 75 45 chr1 51883861 51883994 -190780359 + L2 LINE L2 3078 3214 -58 415 298 77 17 chr1 51884081 51884262 -190780091 - MIR SINE MIR -2 260 69 373 346 101 0 chr1 51884520 51884728 -190779625 - MIR SINE MIR 0 262 34 249 279 57 8 chr1 51885657 51885779 -190778574 + L2 LINE L2 3163 3290 -23 1100 241 30 32 chr1 51887066 51887446 -190776907 + MLT1G3 LTR MaLR 1 401 -166 936 96 19 45 chr1 51887942 51888098 -190776255 - MLT1A1 LTR MaLR -213 152 1 209 204 0 23 chr1 51889147 51889191 -190775162 - L2 LINE L2 -252 3061 3019 5290 60 3 3 chr1 51889691 51890322 -190774031 - L1PA7 LINE L1 -13 6141 5511 442 206 62 0 chr1 51890717 51890814 -190773539 + MIR SINE MIR 37 139 -69 234 224 0 69 chr1 51890840 51890898 -190773455 + MIR3 SINE MIR 127 180 -28 340 236 164 24 chr1 51890973 51891138 -190773215 + MIR SINE MIR 1 188 -74 3821 62 51 0 chr1 51891192 51891679 -190772674 + LTR10D LTR ERV1 1 512 -1 5666 54 12 5 chr1 51891867 51892529 -190771824 + PABL_B LTR ERV1 1 667 0 231 305 172 7 chr1 51892885 51893036 -190771317 + L2 LINE L2 1653 1828 -1486 7734 40 30 0 chr1 51893048 51893919 -190770434 + MER11D LTR ERVK 1 897 0 204 120 40 20 chr1 51895354 51895404 -190768949 + (TTAAA)n Simple_repeat Simple_repeat 3 53 0 990 285 85 24 chr1 51895551 51895879 -190768474 - L1MEc LINE L1 -4573 1823 1517 1630 171 29 4 chr1 51895879 51896154 -190768199 + AluJo SINE Alu 9 290 -22 990 285 85 24 chr1 51896154 51896591 -190767762 - L1MEc LINE L1 -4879 1517 1011 308 118 0 20 chr1 51896630 51896681 -190767672 + LTR54B LTR ERV1 1 50 -448 * 918 211 22 6 chr1 51896666 51896846 -190767507 + MSTA LTR MaLR 246 428 0 368 311 137 21 chr1 51896857 51897243 -190767110 + L2 LINE L2 1493 1923 -1391 928 333 116 35 chr1 51897334 51898371 -190765982 - L2 LINE L2 -52 3220 2096 1131 235 80 114 chr1 51898371 51898621 -190765732 + MLT1F LTR MaLR 1 258 -284 1658 174 13 44 chr1 51898621 51898938 -190765415 - AluJb SINE Alu 0 312 6 1131 235 80 114 chr1 51898938 51899248 -190765105 + MLT1F LTR MaLR 258 542 0 928 333 116 35 chr1 51899248 51899289 -190765064 - L2 LINE L2 -1176 2096 2060 2240 225 21 29 chr1 51899315 51899839 -190764514 + MLT2B1 LTR ERVL 1 520 0 181 195 24 0 chr1 51900857 51900898 -190763455 + MIR SINE MIR 31 72 -136 2138 125 3 3 chr1 51901490 51901793 -190762560 - AluSq SINE Alu -9 304 2 242 336 34 0 chr1 51902031 51902180 -190762173 - L1ME LINE L1 -286 5878 5725 216 0 0 0 chr1 51902180 51902204 -190762149 + (T)n Simple_repeat Simple_repeat 1 24 0 1137 279 152 12 chr1 51902204 51903293 -190761060 - L1ME LINE L1 -511 5653 4485 482 255 19 9 chr1 51903587 51903693 -190760660 - MER81 DNA DNA -3 111 5 393 257 28 9 chr1 51904109 51904218 -190760135 - MIR3 SINE MIR -54 154 44 452 280 0 38 chr1 51904635 51904767 -190759586 - MIR SINE MIR -48 214 88 352 298 86 32 chr1 51905583 51905872 -190758481 - LTR16C LTR ERVL 0 491 156 274 345 86 22 chr1 51906095 51906234 -190758119 - MIR3 SINE MIR -27 181 34 181 150 50 0 chr1 51906462 51906502 -190757851 + L2 LINE L2 3271 3312 -1 208 191 48 32 chr1 51907358 51907421 -190756932 - MER5B DNA MER1_type -113 65 2 731 82 0 10 chr1 51907727 51907825 -190756528 + MER4A LTR ERV1 1 97 -567 * 1932 109 154 91 chr1 51907822 51908206 -190756147 + MER4A LTR ERV1 257 664 0 2585 107 59 44 chr1 51908209 51908700 -190755653 + MER4A-int LTR ERV1 1 563 -6035 280 98 0 59 chr1 51908780 51908831 -190755522 + MER4A-int LTR ERV1 761 808 -5790 1304 201 53 11 chr1 51908935 51909198 -190755155 + MER4A-int LTR ERV1 1851 2124 -4207 2225 98 54 17 chr1 51909200 51909643 -190754710 + MER4-int LTR ERV1 532 1026 -5732 * 6656 92 83 22 chr1 51909642 51910450 -190753903 + MER4-int LTR ERV1 4167 5138 -1460 2883 3 0 0 chr1 51910450 51910756 -190753597 - AluYb8 SINE Alu -12 306 1 6656 92 83 22 chr1 51910756 51911296 -190753057 + MER4-int LTR ERV1 5138 5644 -954 5810 109 38 27 chr1 51911314 51912285 -190752068 - MER4A-int LTR ERV1 -1477 5121 4140 2249 139 14 14 chr1 51912302 51912655 -190751698 - L1PB1 LINE L1 -3 6864 6509 835 88 29 0 chr1 51912655 51912825 -190751528 + (TA)n Simple_repeat Simple_repeat 1 175 0 2249 139 14 14 chr1 51912825 51912838 -190751515 - L1PB1 LINE L1 -357 6510 6498 30 0 0 0 chr1 51912838 51912868 -190751485 + AT_rich Low_complexity Low_complexity 1 30 0 542 126 42 0 chr1 51912868 51913035 -190751318 + (TA)n Simple_repeat Simple_repeat 1 174 0 374 122 41 0 chr1 51913049 51913147 -190751206 + (TA)n Simple_repeat Simple_repeat 1 102 0 3916 125 4 4 chr1 51913147 51913922 -190750431 - L1PB1 LINE L1 -360 6507 5733 5889 103 104 117 chr1 51913928 51915509 -190748844 - pTR5 LTR ERV1 0 2438 743 14447 182 61 13 chr1 51915509 51919279 -190745074 - L1PB1 LINE L1 -1129 5733 1680 2122 137 3 0 chr1 51919279 51919578 -190744775 - AluSx SINE Alu -12 300 1 14447 182 61 13 chr1 51919578 51920581 -190743772 - L1PB1 LINE L1 -5182 1680 727 1903 111 22 31 chr1 51920582 51920906 -190743447 - MER4A-int LTR ERV1 -2441 4157 3837 * 13813 116 152 109 chr1 51920905 51922905 -190741448 - MER4A-int LTR ERV1 -2917 3681 1465 2175 88 42 0 chr1 51922905 51923190 -190741163 - AluSp SINE Alu -16 297 1 13813 116 152 109 chr1 51923190 51924718 -190739635 - MER4A-int LTR ERV1 -5133 1465 3 1568 136 4 0 chr1 51924722 51924950 -190739403 - MER4A LTR ERV1 0 664 436 429 118 6 163 chr1 51924952 51925008 -190739345 - MER4A LTR ERV1 -203 461 398 4822 146 38 44 chr1 51925008 51925969 -190738384 + LTR5 LTR ERVK 1 955 -14 429 118 6 163 chr1 51925969 51926081 -190738272 - MER4A LTR ERV1 -266 398 261 623 153 0 0 chr1 51926081 51926179 -190738174 - MER4A LTR ERV1 -566 98 1 873 217 48 34 chr1 51926593 51926800 -190737553 + MER63A DNA MER1_type 1 210 0 222 273 0 18 chr1 51926851 51926906 -190737447 + L3 LINE CR1 1296 1349 -228 190 278 79 88 chr1 51927255 51927471 -190736882 + L2 LINE L2 2569 2782 -532 357 196 82 21 chr1 51927865 51927962 -190736391 - MLT1K LTR MaLR -18 570 468 5438 140 48 12 chr1 51927962 51928065 -190736288 + L1PA16 LINE L1 5084 5182 -984 2368 84 3 0 chr1 51928065 51928374 -190735979 + AluY SINE Alu 1 310 -1 5438 140 48 12 chr1 51928374 51929352 -190735001 + L1PA16 LINE L1 5182 6166 0 275 305 95 68 chr1 51929358 51929653 -190734700 - MLT1K LTR MaLR -108 480 178 19391 49 2 4 chr1 51930048 51933219 -190731134 - L1PA5 LINE L1 -15 6139 2968 6156 44 0 1 chr1 51933219 51933972 -190730381 + L1PA5 LINE L1 2208 2959 -3187 536 294 158 29 chr1 51934305 51934652 -190729701 + LTR33 LTR ERVL 54 445 -76 264 311 93 20 chr1 51934702 51934853 -190729500 + MIR3 SINE MIR 41 202 -6 346 217 57 57 chr1 51935058 51935164 -190729189 + MIR SINE MIR 113 218 -44 207 259 156 67 chr1 51936393 51936528 -190727825 - MER5B DNA MER1_type -25 153 7 869 139 33 4 chr1 51936550 51936767 -190727586 + CT-rich Low_complexity Low_complexity 1 223 0 2051 123 3 0 chr1 51936771 51937071 -190727282 - AluSx SINE Alu -11 301 1 359 361 49 7 chr1 51937418 51937562 -190726791 + L2 LINE L2 3102 3251 -21 226 329 21 12 chr1 51938145 51938271 -190726082 - MIR SINE MIR -61 147 28 201 39 0 0 chr1 51938622 51938648 -190725705 + (TG)n Simple_repeat Simple_repeat 2 27 0 329 326 49 14 chr1 51938812 51938956 -190725397 + MIR SINE MIR 84 232 -30 335 256 106 33 chr1 51939231 51939411 -190724942 - L2 LINE L2 -183 3089 2897 603 263 94 20 chr1 51939464 51939719 -190724634 - L2 LINE L2 -436 2878 2605 199 305 97 97 chr1 51940331 51940600 -190723753 - L2 LINE L2 -922 2392 2124 646 262 98 67 chr1 51940757 51941204 -190723149 - L2 LINE L2 -1498 1816 1356 549 191 162 38 chr1 51941285 51941520 -190722833 + L2 LINE L2 3012 3275 -38 186 164 328 49 chr1 51941764 51941825 -190722528 + MIR SINE MIR 21 98 -164 427 332 120 17 chr1 51942351 51942592 -190721761 + L3 LINE CR1 1197 1462 -115 191 242 132 71 chr1 51942871 51943053 -190721300 + MIR3 SINE MIR 1 193 -15 209 260 20 0 chr1 51943766 51943816 -190720537 + L3 LINE CR1 1524 1574 -3 1051 119 132 100 chr1 51944367 51944618 -190719735 - MSTB1 LTR MaLR 0 432 174 3256 9 0 0 chr1 51944618 51945039 -190719314 - L1PA2 LINE L1 -536 5619 5199 4636 21 0 6 chr1 51945039 51945574 -190718779 + L1PA2 LINE L1 5624 6155 0 231 61 0 0 chr1 51945615 51945648 -190718705 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 905 134 55 24 chr1 51945650 51945814 -190718539 - MSTB1 LTR MaLR -253 173 5 634 221 117 0 chr1 51945951 51946096 -190718257 + MIR SINE MIR 99 260 -2 299 223 0 26 chr1 51946192 51946269 -190718084 + L1MC/D LINE L1 5754 5826 -301 968 264 111 19 chr1 51946471 51946850 -190717503 + L2 LINE L2 2894 3307 -6 198 296 30 30 chr1 51946950 51947085 -190717268 - L2 LINE L2 -624 2690 2556 199 281 10 83 chr1 51947874 51947970 -190716383 - L2 LINE L2 -221 3051 2963 213 39 0 0 chr1 51948131 51948157 -190716196 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 250 337 190 0 chr1 51949506 51949711 -190714642 - L3 LINE CR1 -11 1566 1323 216 0 0 0 chr1 51951038 51951062 -190713291 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 397 275 84 94 chr1 51951073 51951371 -190712982 - L2 LINE L2 0 3272 2978 216 0 0 0 chr1 51953011 51953035 -190711318 + (CA)n Simple_repeat Simple_repeat 2 25 0 537 292 85 34 chr1 51953698 51953868 -190710485 + MIR SINE MIR 15 202 -60 453 204 204 0 chr1 51953868 51953981 -190710372 - MER91C DNA MER1_type 0 140 5 537 292 85 34 chr1 51953981 51954046 -190710307 + MIR SINE MIR 202 262 0 248 235 0 0 chr1 51955456 51955507 -190708846 - L2 LINE L2 0 3272 3222 576 214 34 130 chr1 51957421 51957554 -190706799 + MSTB1 LTR MaLR 6 103 -329 7745 18 10 1 chr1 51957554 51958665 -190705688 + L1PA4 LINE L1 5037 6155 0 576 214 34 130 chr1 51958665 51958793 -190705560 + MSTB1 LTR MaLR 103 242 -190 5733 161 56 4 chr1 51958906 51959899 -190704454 - L1PBa LINE L1 -5816 1047 3 1515 100 0 17 chr1 51960804 51961034 -190703319 + L1PA13 LINE L1 5937 6162 -1 2181 164 27 0 chr1 51961220 51961585 -190702768 + L1PBa LINE L1 128 502 -6361 * 38982 83 3 10 chr1 51961583 51967816 -190696537 - L1PA5 LINE L1 0 6153 11 367 214 0 0 chr1 51967826 51967896 -190696457 - MER77 LTR ERV1 -535 70 1 7706 175 34 25 chr1 51967974 51968003 -190696350 - L1MC3 LINE L1 -2 7783 7756 1810 155 27 0 chr1 51968003 51968299 -190696054 - AluJb SINE Alu -8 304 1 7706 175 34 25 chr1 51968299 51968833 -190695520 - L1MC3 LINE L1 -29 7756 7228 1993 135 0 0 chr1 51968833 51969136 -190695217 - AluSc SINE Alu -6 303 1 7706 175 34 25 chr1 51969136 51970122 -190694231 - L1MC3 LINE L1 -557 7228 6219 4111 135 8 57 chr1 51970134 51970179 -190694174 - L1MB2 LINE L1 -4 6167 6121 2150 98 3 16 chr1 51970179 51970485 -190693868 - AluSc SINE Alu -7 302 1 4111 135 8 57 chr1 51970485 51970962 -190693391 - L1MB2 LINE L1 -50 6121 5622 1329 209 10 17 chr1 51970962 51971263 -190693090 - AluJo SINE Alu -9 303 5 4111 135 8 57 chr1 51971263 51971443 -190692910 - L1MB2 LINE L1 -549 5622 5435 234 45 68 0 chr1 51971443 51971487 -190692866 + T-rich Low_complexity Low_complexity 2 48 0 1990 124 0 0 chr1 51971489 51971771 -190692582 - AluSx SINE Alu -30 282 1 4111 135 8 57 chr1 51971771 51971821 -190692532 - L1MB2 LINE L1 -673 5498 5447 2391 142 46 18 chr1 51971892 51972280 -190692073 - MSTA LTR MaLR -2 426 28 2055 21 15 0 chr1 51972280 51972568 -190691785 - L1PA4 LINE L1 -724 5431 5141 6495 20 0 0 chr1 51972568 51973299 -190691054 + L1PA4 LINE L1 5417 6147 -8 4372 256 63 21 chr1 51973385 51974148 -190690205 - L1MEc LINE L1 -1973 4242 3512 1698 162 3 0 chr1 51974148 51974432 -190689921 - AluJo SINE Alu -8 304 20 4372 256 63 21 chr1 51974432 51975946 -190688407 - L1MEc LINE L1 -2703 3512 1900 227 98 66 0 chr1 51975946 51976007 -190688346 + (TA)n Simple_repeat Simple_repeat 2 66 0 224 302 0 0 chr1 51976098 51976151 -190688202 + (TATG)n Simple_repeat Simple_repeat 2 54 0 635 144 0 0 chr1 51976208 51976319 -190688034 - L1 LINE L1 -1297 4849 4739 6048 181 29 4 chr1 51976319 51978537 -190685816 - L1PA16 LINE L1 -42 6124 3853 347 299 62 21 chr1 51978547 51978691 -190685662 - L1MEc LINE L1 -3760 2455 2306 309 244 33 103 chr1 51978704 51978917 -190685436 - L1MEc LINE L1 -4086 2310 2113 1165 137 0 12 chr1 51980138 51980306 -190684047 - AluSx SINE Alu -146 166 1 312 280 96 71 chr1 51982343 51982625 -190681728 - L2 LINE L2 -14 3258 2970 38444 66 6 13 chr1 51982640 51987401 -190676952 + L1PA5 LINE L1 1 4708 -1446 2367 103 0 0 chr1 51987401 51987712 -190676641 + AluY SINE Alu 1 311 0 38444 66 6 13 chr1 51987712 51989149 -190675204 + L1PA5 LINE L1 4708 6154 0 588 144 189 0 chr1 51989696 51989807 -190674546 - FLAM_C SINE Alu -11 132 1 445 322 101 8 chr1 51989817 51990075 -190674278 - L1 LINE L1 -2368 3778 3497 691 319 106 40 chr1 51990294 51990938 -190673415 - L1 LINE L1 -2977 3169 2470 2140 119 7 0 chr1 51990938 51991231 -190673122 + AluY SINE Alu 1 295 -16 691 319 106 40 chr1 51991231 51991310 -190673043 - L1 LINE L1 -3676 2470 2398 1000 155 0 0 chr1 51991855 51991997 -190672356 - FRAM SINE Alu -23 153 12 198 0 0 0 chr1 51992291 51992313 -190672040 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 21 71 0 0 chr1 51992907 51992949 -190671404 + AT_rich Low_complexity Low_complexity 1 42 0 181 325 60 48 chr1 51993684 51993767 -190670586 + L2 LINE L2 3188 3271 -1 196 306 80 55 chr1 51993982 51994181 -190670172 - L2 LINE L2 -2114 1200 997 619 248 113 57 chr1 51995069 51995299 -190669054 + MIR SINE MIR 5 247 -15 187 274 105 74 chr1 51995758 51995948 -190668405 + L2 LINE L2 2869 3064 -208 505 299 84 14 chr1 51996943 51997157 -190667196 + L1M4 LINE L1 3075 3303 -2843 301 315 50 77 chr1 51997635 51997857 -190666496 + L1MEd LINE L1 592 807 -5312 33 25 0 0 chr1 51997908 51997948 -190666405 + AT_rich Low_complexity Low_complexity 1 40 0 1798 145 0 0 chr1 51997953 51998235 -190666118 + L1M2 LINE L1 5 286 -6563 871 100 41 0 chr1 51998341 51998685 -190665668 + (TA)n Simple_repeat Simple_repeat 1 358 0 2100 135 6 6 chr1 51998690 51999038 -190665315 + L1PB1 LINE L1 5801 6148 -3 5314 109 38 26 chr1 51999055 52000025 -190664328 + MER4-int LTR ERV1 4140 5121 -1477 3459 91 37 7 chr1 52000043 52000583 -190663770 - MER41-int LTR ERV1 -993 4953 4398 2811 3 0 0 chr1 52000583 52000886 -190663467 + AluYb8 SINE Alu 1 303 -15 692 274 58 9 chr1 52001490 52001815 -190662538 + L1ME4a LINE L1 5573 5913 -208 3230 175 59 17 chr1 52001968 52002284 -190662069 + L1PA11 LINE L1 4338 4639 -1507 2125 125 0 26 chr1 52002284 52002597 -190661756 + AluSx SINE Alu 1 305 -7 3230 175 59 17 chr1 52002597 52002647 -190661706 + L1PA11 LINE L1 4639 4685 -1461 180 0 0 0 chr1 52002647 52002667 -190661686 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3230 175 59 17 chr1 52002667 52003007 -190661346 + L1PA11 LINE L1 4685 5075 -1071 1524 23 0 0 chr1 52003007 52003184 -190661169 + L1PA4 LINE L1 5976 6152 -3 6517 82 15 12 chr1 52003194 52004123 -190660230 + L1PA11 LINE L1 5098 6030 -144 1999 138 10 10 chr1 52004123 52004427 -190659926 + AluSx SINE Alu 1 304 -8 6517 82 15 12 chr1 52004427 52004572 -190659781 + L1PA11 LINE L1 6030 6173 -1 1376 208 59 0 chr1 52004627 52004915 -190659438 - AluJo SINE Alu -6 306 2 225 319 29 0 chr1 52005308 52005377 -190658976 + MIR SINE MIR 58 128 -80 33 66 0 0 chr1 52005453 52005514 -190658839 + AT_rich Low_complexity Low_complexity 1 61 0 185 219 98 0 chr1 52005680 52005721 -190658632 - L2 LINE L2 -42 3230 3186 577 230 171 7 chr1 52005746 52005898 -190658455 - MER5A DNA MER1_type -6 183 7 29 47 0 0 chr1 52006059 52006102 -190658251 + AT_rich Low_complexity Low_complexity 1 43 0 1495 139 5 0 chr1 52006121 52006336 -190658017 - AluSx SINE Alu -96 216 1 245 298 122 0 chr1 52006674 52006805 -190657548 + MIR SINE MIR 86 232 -30 1136 209 4 0 chr1 52006954 52007189 -190657164 + L1 LINE L1 4042 4277 -1869 6197 164 25 12 chr1 52007192 52009279 -190655074 + MER83B-int LTR ERV1 794 3281 -5638 681 264 0 0 chr1 52009275 52009419 -190654934 + MER83B-int LTR ERV1 4539 4682 -4237 * 3991 125 49 5 chr1 52009420 52010068 -190654285 + MER83B-int LTR ERV1 4901 5577 -3342 * 4015 189 18 3 chr1 52010053 52010793 -190653560 + MER83B-int LTR ERV1 6162 6912 -2007 383 226 10 20 chr1 52010804 52010906 -190653447 + MER83B-int LTR ERV1 6846 6934 -484 757 147 24 8 chr1 52010918 52011100 -190653253 + MER83B-int LTR ERV1 3954 4323 -557 1131 188 2 14 chr1 52011204 52011443 -190652910 - HUERS-P3 LTR ERV1 -18 8901 7168 313 39 19 39 chr1 52011709 52011761 -190652592 + L1PA10 LINE L1 6117 6167 -1 482 214 36 150 chr1 52011985 52012151 -190652202 + L1MEc LINE L1 2187 2370 -3845 1940 164 0 16 chr1 52012151 52012468 -190651885 + AluJb SINE Alu 1 312 0 482 214 36 150 chr1 52012468 52012494 -190651859 + L1MEc LINE L1 2370 2397 -3818 16957 44 5 0 chr1 52012494 52015370 -190648983 + L1PA5 LINE L1 3267 6152 -2 482 214 36 150 chr1 52015370 52015597 -190648756 + L1MEc LINE L1 2397 2518 -3697 942 124 0 0 chr1 52017425 52017554 -190646799 - AluSq/x SINE Alu -183 129 1 348 290 193 0 chr1 52017555 52017700 -190646653 + MIR SINE MIR 80 252 -10 218 313 36 45 chr1 52018147 52018259 -190646094 + L2 LINE L2 2945 3055 -217 272 287 149 0 chr1 52018369 52018463 -190645890 - L2 LINE L2 0 3313 3206 325 317 116 18 chr1 52018994 52019158 -190645195 - MER5A DNA MER1_type -9 180 1 1782 171 168 8 chr1 52020026 52020395 -190643958 + MSTA LTR MaLR 1 428 0 222 37 0 0 chr1 52021177 52021204 -190643149 + (TC)n Simple_repeat Simple_repeat 2 28 0 969 304 107 42 chr1 52021604 52022368 -190641985 + L1MB5 LINE L1 2 815 -5727 204 255 0 0 chr1 52022371 52022418 -190641935 + T-rich Low_complexity Low_complexity 1 47 0 1934 200 48 13 chr1 52022425 52022970 -190641383 + L1MB5 LINE L1 1036 1599 -4943 3550 213 38 22 chr1 52022971 52023149 -190641204 + L1MB5 LINE L1 2417 2591 -4053 1731 194 10 3 chr1 52023149 52023458 -190640895 + AluJo SINE Alu 1 311 -1 3550 213 38 22 chr1 52023458 52024202 -190640151 + L1MB5 LINE L1 2591 3374 -3270 2509 56 0 0 chr1 52024202 52024504 -190639849 - AluY SINE Alu -9 302 1 3550 213 38 22 chr1 52024504 52024995 -190639358 + L1MB5 LINE L1 3374 3856 -2788 1092 215 96 7 chr1 52026289 52026559 -190637794 + L1MB5 LINE L1 5202 5495 -1149 2040 146 6 9 chr1 52026572 52026933 -190637420 + L1PA16 LINE L1 5814 6173 0 1523 192 41 61 chr1 52026961 52027413 -190636940 + L1MB5 LINE L1 5490 5929 -743 1479 132 18 5 chr1 52027426 52027646 -190636707 + AluSx SINE Alu 1 223 -89 2207 177 52 22 chr1 52027691 52028138 -190636215 + L1MB5 LINE L1 6203 6662 -10 516 369 9 18 chr1 52028146 52028368 -190635985 + LTR40a LTR ERVL 182 401 -118 437 291 117 16 chr1 52028483 52028730 -190635623 + L2 LINE L2 2514 2785 -529 322 230 60 0 chr1 52028773 52028873 -190635480 + L1MC4 LINE L1 6964 7069 -973 220 319 0 0 chr1 52028875 52028947 -190635406 + GA-rich Low_complexity Low_complexity 2 73 0 269 51 26 0 chr1 52029061 52029100 -190635253 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 1925 177 14 9 chr1 52029112 52029620 -190634733 + L1MB3 LINE L1 4964 5476 -695 2162 137 0 10 chr1 52029645 52029952 -190634401 - AluSx SINE Alu -8 304 1 741 161 59 0 chr1 52029953 52030071 -190634282 - AluSp SINE Alu -179 134 10 21 0 0 0 chr1 52030075 52030096 -190634257 + AT_rich Low_complexity Low_complexity 1 21 0 4508 139 14 3 chr1 52030099 52030788 -190633565 + L1MB3 LINE L1 5483 6179 -4 225 325 221 0 chr1 52032700 52032863 -190631490 + MIR SINE MIR 49 247 -15 444 321 16 38 chr1 52033104 52033288 -190631065 + MIR SINE MIR 13 192 -70 858 190 50 17 chr1 52033973 52034152 -190630201 - L1MC1 LINE L1 -7 6326 6142 10763 149 43 8 chr1 52034152 52036688 -190627665 - L1PBa LINE L1 -1717 5145 2253 2277 87 7 10 chr1 52036688 52036988 -190627365 + AluSc SINE Alu 1 299 -10 10763 149 43 8 chr1 52036988 52038667 -190625686 - L1PBa LINE L1 -4609 2253 634 1145 132 37 0 chr1 52038669 52038859 -190625494 - L1PBa LINE L1 -6665 198 2 10091 199 19 1 chr1 52038863 52040865 -190623488 - L1MDa LINE L1 -1982 4558 2521 24 67 0 0 chr1 52041849 52041894 -190622459 + AT_rich Low_complexity Low_complexity 1 45 0 30 0 0 0 chr1 52042778 52042808 -190621545 + AT_rich Low_complexity Low_complexity 1 30 0 1053 251 58 65 chr1 52043090 52043663 -190620690 + L1ME LINE L1 521 1089 -4981 411 21 0 0 chr1 52043685 52043733 -190620620 + (TA)n Simple_repeat Simple_repeat 2 49 0 30392 35 1 0 chr1 52043752 52048151 -190616202 + L1PA4 LINE L1 1754 6155 0 277 61 20 20 chr1 52048246 52048295 -190616058 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 924 45 0 0 chr1 52049676 52049787 -190614566 - AluSg/x SINE Alu -16 294 184 2366 38 14 0 chr1 52049787 52050215 -190614138 - L1P2 LINE L1 -613 5542 5111 360 251 220 18 chr1 52050229 52050456 -190613897 + L1MC4a LINE L1 5724 5998 -123 1320 189 94 10 chr1 52051715 52052012 -190612341 - MER33 DNA MER1_type -1 323 2 1478 208 7 23 chr1 52052800 52053108 -190611245 - AluJo SINE Alu -9 303 1 1975 136 11 0 chr1 52053172 52053459 -190610894 + AluSg SINE Alu 1 290 -20 2281 95 0 0 chr1 52054097 52054403 -190609950 - L1P3 LINE L1 -5364 1097 792 1117 121 0 0 chr1 52054403 52054560 -190609793 - AluY SINE Alu -7 304 148 5739 110 5 0 chr1 52054560 52055344 -190609009 - L1P3 LINE L1 -5670 791 4 225 0 0 0 chr1 52055352 52055377 -190608976 + (T)n Simple_repeat Simple_repeat 1 25 0 583 270 75 69 chr1 52055377 52055725 -190608628 + L1PA12 LINE L1 54 403 -7178 7543 56 2 1 chr1 52055835 52056817 -190607536 + L1PA6 LINE L1 5171 6154 0 4058 295 35 55 chr1 52056835 52059050 -190605303 - L1PA12 LINE L1 -4816 2765 54 225 0 0 0 chr1 52059050 52059075 -190605278 + (A)n Simple_repeat Simple_repeat 1 25 0 3259 146 8 0 chr1 52059083 52059564 -190604789 + L1P3 LINE L1 4 488 -5973 12163 71 0 0 chr1 52059664 52061158 -190603195 + HERV17 LTR ERV1 4526 6019 -2607 303 51 0 0 chr1 52061151 52061190 -190603163 + HERV17 LTR ERV1 7510 7548 -1078 * 2271 89 0 3 chr1 52061180 52061473 -190602880 + HERV17 LTR ERV1 8335 8626 0 2652 65 3 0 chr1 52061473 52061798 -190602555 + LTR17 LTR ERV1 1 326 -454 210 143 0 0 chr1 52061798 52061833 -190602520 + (A)n Simple_repeat Simple_repeat 1 35 0 5450 161 39 24 chr1 52061836 52063872 -190600481 + L1MA5A LINE L1 4233 6294 -3 224 311 51 34 chr1 52063988 52064165 -190600188 - L2 LINE L2 -624 2690 2511 2072 127 10 7 chr1 52065001 52065308 -190599045 - AluSq SINE Alu -5 308 1 383 236 72 120 chr1 52067118 52067326 -190597027 - L2 LINE L2 -95 3177 2980 5982 149 28 6 chr1 52067717 52069479 -190594874 - L1MA8 LINE L1 -27 7683 5884 6842 103 12 20 chr1 52069492 52070766 -190593587 - L1PB1 LINE L1 0 6151 4900 2122 228 45 29 chr1 52070768 52071777 -190592576 - L1MA8 LINE L1 -3649 3916 2893 2290 87 3 10 chr1 52071852 52072152 -190592201 - AluSp SINE Alu -15 298 1 360 262 12 0 chr1 52073807 52073891 -190590462 - MIR SINE MIR -103 105 21 11283 66 3 17 chr1 52074014 52076058 -190588295 - HERV17 LTR ERV1 -4198 4428 2430 2286 140 6 0 chr1 52076041 52076377 -190587976 - HERV17 LTR ERV1 -6610 2016 1679 * 12661 107 8 40 chr1 52076374 52078298 -190586055 - HERV17 LTR ERV1 -6762 1864 1 3304 121 54 10 chr1 52078298 52078801 -190585552 - LTR17 LTR ERV1 0 780 256 1117 219 15 8 chr1 52078806 52079066 -190585287 - L1 LINE L1 -1908 4940 4679 542 323 129 22 chr1 52079066 52079422 -190584931 - L2 LINE L2 -26 3287 2894 341 276 34 24 chr1 52079585 52079721 -190584632 + MIR SINE MIR 25 161 -62 2706 13 3 3 chr1 52080041 52080341 -190584012 + AluYa5 SINE Alu 1 300 -11 234 282 0 39 chr1 52080422 52080500 -190583853 - L3 LINE CR1 -461 1116 1042 1943 145 0 0 chr1 52080669 52080988 -190583365 + AluSx SINE Alu 1 319 0 242 279 93 12 chr1 52081214 52081300 -190583053 + L1MEd LINE L1 3 95 -6024 606 278 94 34 chr1 52081374 52081608 -190582745 + MIR SINE MIR 13 260 -2 1292 40 7 0 chr1 52082161 52082309 -190582044 - AluY SINE Alu -162 149 1 247 235 105 88 chr1 52082637 52082875 -190581478 - L1ME3A LINE L1 -5 6165 5924 430 284 124 5 chr1 52082895 52083113 -190581240 - L1ME3A LINE L1 -202 5968 5725 1961 185 19 0 chr1 52083130 52083455 -190580898 + Tigger7 DNA MER2_type 1 331 -402 762 107 19 0 chr1 52083454 52083557 -190580796 + Tigger7 DNA MER2_type 2383 2487 0 * 11472 179 44 10 chr1 52083579 52085840 -190578513 - L1 LINE L1 -2611 4237 2054 1785 179 17 7 chr1 52085840 52086137 -190578216 - AluJo SINE Alu -2 310 11 11472 179 44 10 chr1 52086137 52086248 -190578105 - L1 LINE L1 -4794 2054 1948 1930 120 3 30 chr1 52086248 52086548 -190577805 - AluSq SINE Alu -21 292 1 11472 179 44 10 chr1 52086548 52087485 -190576868 - L1 LINE L1 -4900 1948 818 21919 70 6 6 chr1 52087607 52090422 -190573931 - L1P LINE L1 -3331 2815 1 4693 256 45 20 chr1 52090430 52091747 -190572606 - L1PA12 LINE L1 -5169 2415 6 776 269 75 24 chr1 52091763 52092016 -190572337 + ERVL-C1 LTR ERVL 5490 5755 -9 911 227 16 0 chr1 52092017 52092211 -190572142 + MLT2C1 LTR ERVL 1 197 -200 692 219 109 6 chr1 52092212 52092395 -190571958 + MLT1D LTR MaLR 304 505 0 203 278 65 0 chr1 52092577 52092685 -190571668 + (CAGG)n Simple_repeat Simple_repeat 2 116 0 264 30 0 0 chr1 52093700 52093733 -190570620 + (TGAG)n Simple_repeat Simple_repeat 3 35 0 2224 176 31 12 chr1 52094004 52094418 -190569935 + MSTB LTR MaLR 1 422 -4 15603 218 16 27 chr1 52095946 52099975 -190564378 - L1PA15 LINE L1 -7 6860 2788 1187 204 5 0 chr1 52099975 52100196 -190564157 - L1MA2 LINE L1 0 6304 6083 15603 218 16 27 chr1 52100196 52101010 -190563343 - L1PA15 LINE L1 -4079 2788 1966 38049 93 4 8 chr1 52101033 52106273 -190558080 + L1P LINE L1 11 5228 -918 29142 96 5 10 chr1 52106380 52111433 -190552920 + L1PA7 LINE L1 1125 6153 -1 432 306 63 34 chr1 52111753 52111959 -190552394 - L3b LINE CR1 -95 1488 1277 198 281 158 44 chr1 52112237 52112351 -190552002 + MIR SINE MIR 126 252 -10 1487 137 0 39 chr1 52112404 52112638 -190551715 + AluSx SINE Alu 1 225 -87 2663 230 26 3 chr1 52112638 52113294 -190551059 - L1MB4 LINE L1 -25 6155 5485 8031 29 0 0 chr1 52113318 52114730 -190549623 - L1PA4 LINE L1 -6 6149 4735 357 294 42 8 chr1 52115131 52115250 -190549103 - L2 LINE L2 -1 3312 3190 216 248 91 42 chr1 52115476 52115624 -190548729 + MIR3 SINE MIR 12 173 -61 573 285 66 29 chr1 52116439 52116681 -190547672 - MIR SINE MIR -2 260 10 237 238 107 24 chr1 52116751 52116835 -190547518 - L1MEd LINE L1 -6024 95 5 349 239 94 0 chr1 52116903 52117020 -190547333 + L1ME4a LINE L1 5808 5935 -186 4465 165 48 8 chr1 52117613 52118450 -190545903 - L1PA16 LINE L1 -20 6146 5270 1329 169 4 37 chr1 52118542 52118784 -190545569 - AluJo SINE Alu -7 305 72 1450 315 29 79 chr1 52118785 52119449 -190544904 - L1MB4 LINE L1 -816 5330 4705 369 0 0 0 chr1 52119449 52119490 -190544863 + (TG)n Simple_repeat Simple_repeat 2 42 0 1450 315 29 79 chr1 52119490 52119559 -190544794 - L1MB4 LINE L1 -1441 4705 4634 * 2039 224 35 14 chr1 52119544 52120121 -190544232 - L1MB4 LINE L1 -2544 3602 3014 235 189 94 0 chr1 52120193 52120246 -190544107 - L1M4 LINE L1 -1165 4981 4924 972 74 13 20 chr1 52120286 52120435 -190543918 + THE1C-int LTR MaLR 1433 1580 0 1794 164 57 46 chr1 52120435 52120806 -190543547 + THE1C LTR MaLR 1 375 0 699 264 55 0 chr1 52120820 52121021 -190543332 + MLT1D LTR MaLR 287 498 -7 242 323 23 15 chr1 52121032 52121162 -190543191 + (CAGG)n Simple_repeat Simple_repeat 1 131 0 253 282 68 60 chr1 52122606 52122723 -190541630 + L2 LINE L2 3150 3267 -5 2023 176 83 23 chr1 52123868 52124266 -190540087 - MSTB LTR MaLR -4 422 1 400 165 0 25 chr1 52124299 52124369 -190539984 - MSTB-int LTR MaLR -19 1632 1563 2654 90 22 80 chr1 52124369 52124769 -190539584 + MER51B LTR ERV1 1 377 0 10040 137 22 6 chr1 52124778 52126869 -190537484 + MER51B-int LTR ERV1 10 2146 -5670 42531 61 5 8 chr1 52126869 52133043 -190531310 + L1PA5 LINE L1 2 6152 -2 187 358 0 0 chr1 52133184 52133265 -190531088 + MIR SINE MIR 126 206 -56 625 92 11 0 chr1 52133595 52133682 -190530671 - MER41A LTR ERV1 -86 468 381 294 253 226 0 chr1 52133806 52133952 -190530401 + MIR SINE MIR 84 262 0 2183 111 0 38 chr1 52134234 52134549 -190529804 - AluSx SINE Alu -9 303 1 271 355 86 38 chr1 52134877 52135249 -190529104 + L2 LINE L2 1715 2104 -1210 193 333 53 13 chr1 52135481 52135556 -190528797 + MIR3 SINE MIR 113 190 -18 757 179 17 0 chr1 52136114 52136231 -190528122 + AluJb SINE Alu 170 288 -24 2315 83 0 13 chr1 52136799 52137101 -190527252 - AluY SINE Alu 0 311 14 4681 76 100 3 chr1 52137103 52137762 -190526591 - L1MA2 LINE L1 -12 6292 5570 544 135 31 10 chr1 52138018 52138114 -190526239 + MER4A LTR ERV1 1 98 -566 1787 148 3 35 chr1 52138114 52138471 -190525882 + MER4A LTR ERV1 261 664 0 1325 95 0 6 chr1 52138581 52138760 -190525593 - PABL_A LTR ERV1 0 660 483 1146 90 0 0 chr1 52138761 52138905 -190525448 - PABL_A LTR ERV1 -516 144 1 3206 108 25 0 chr1 52138905 52139342 -190525011 - PABL_A-int LTR ERV1 0 5015 4568 316 184 0 0 chr1 52139341 52139390 -190524963 - PABL_B-int LTR ERV1 -7061 61 13 * 386 214 15 92 chr1 52139391 52139402 -190524951 + L2 LINE L2 2556 2566 -748 5506 69 9 1 chr1 52139402 52140057 -190524296 - PABL_A LTR ERV1 0 660 1 386 214 15 92 chr1 52140057 52140176 -190524177 + L2 LINE L2 2566 2676 -638 * 517 294 124 9 chr1 52140174 52140392 -190523961 + MIR SINE MIR 10 252 -10 270 274 42 11 chr1 52140445 52140540 -190523813 + L2 LINE L2 2719 2816 -498 448 315 8 0 chr1 52140732 52140859 -190523494 + L2 LINE L2 3186 3313 0 200 236 0 124 chr1 52141019 52141108 -190523245 + L2 LINE L2 3189 3266 -6 234 0 0 0 chr1 52141616 52141642 -190522711 + (A)n Simple_repeat Simple_repeat 1 26 0 2592 56 0 0 chr1 52142758 52143063 -190521290 - AluSc SINE Alu -4 305 1 246 105 0 0 chr1 52143263 52143301 -190521052 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 857 187 187 44 chr1 52143400 52143489 -190520864 - MER63B DNA MER1_type -774 288 213 668 242 97 24 chr1 52143489 52143654 -190520699 + MER45A DNA AcHobo 2 178 0 857 187 187 44 chr1 52143654 52143815 -190520538 - MER63B DNA MER1_type -849 213 2 375 259 125 44 chr1 52145383 52145489 -190518864 - HAL1 LINE L1 -117 2390 2294 2257 154 54 47 chr1 52145489 52145918 -190518435 + MSTB1 LTR MaLR 1 432 0 375 259 125 44 chr1 52145918 52146154 -190518199 - HAL1 LINE L1 -213 2294 2020 2112 171 27 83 chr1 52146305 52146407 -190517946 - L1M4 LINE L1 -1261 4885 4779 2570 67 35 9 chr1 52146407 52146748 -190517605 + L1MA1 LINE L1 5953 6302 0 2112 171 27 83 chr1 52146748 52147072 -190517281 - L1M4 LINE L1 -1367 4779 4491 2415 88 3 0 chr1 52147072 52147379 -190516974 - AluSg SINE Alu -2 308 1 2112 171 27 83 chr1 52147379 52147471 -190516882 - L1M4 LINE L1 -1655 4491 4395 1292 132 84 0 chr1 52147728 52147955 -190516398 - L1MA4A LINE L1 -7 6296 6051 761 256 83 26 chr1 52148145 52148411 -190515942 + L2 LINE L2 3033 3313 0 186 43 0 0 chr1 52148528 52148551 -190515802 + (TG)n Simple_repeat Simple_repeat 1 23 0 820 274 31 31 chr1 52148591 52148846 -190515507 + MIR SINE MIR 5 259 -3 239 345 36 36 chr1 52149108 52149218 -190515135 + L2 LINE L2 3163 3272 0 1915 143 3 33 chr1 52151274 52151581 -190512772 + AluSx SINE Alu 1 298 -14 523 277 48 41 chr1 52151783 52151976 -190512377 + MIR SINE MIR 10 203 -59 709 171 65 0 chr1 52153167 52153290 -190511063 - LTR47A LTR ERVL 0 452 322 23 54 0 0 chr1 52154477 52154514 -190509839 + AT_rich Low_complexity Low_complexity 1 37 0 641 244 70 0 chr1 52154819 52154991 -190509362 + MIR SINE MIR 62 245 -17 1222 118 29 0 chr1 52155386 52155556 -190508797 - AluSg/x SINE Alu -9 303 129 510 249 57 88 chr1 52155558 52155648 -190508705 - L1M4 LINE L1 -981 5234 5143 892 212 111 5 chr1 52155648 52155846 -190508507 - MER20 DNA MER1_type 0 219 1 510 249 57 88 chr1 52155846 52156177 -190508176 - L1M4 LINE L1 -1072 5143 4826 502 124 22 11 chr1 52156192 52156281 -190508072 - L1MC2 LINE L1 0 6344 6255 239 254 0 18 chr1 52157469 52157524 -190506829 - MLT1D LTR MaLR -451 54 1 546 249 48 14 chr1 52157529 52157738 -190506615 - L1MEc LINE L1 -3697 2518 2303 436 267 58 32 chr1 52157719 52157756 -190506597 - L1MEc LINE L1 -3838 2377 2342 * 18187 43 2 1 chr1 52157756 52160639 -190503714 - L1PA5 LINE L1 -2 6152 3267 436 267 58 32 chr1 52160639 52160665 -190503688 - L1MEc LINE L1 -3873 2342 2318 1921 164 0 16 chr1 52160665 52160982 -190503371 - AluJb SINE Alu 0 312 1 436 267 58 32 chr1 52160982 52161203 -190503150 - L1MEc LINE L1 -3897 2318 2119 347 57 0 38 chr1 52161374 52161427 -190502926 - L1PA10 LINE L1 -1 6167 6117 278 274 0 0 chr1 52161427 52161500 -190502853 - HUERS-P3b LTR ERV1 -2033 6886 6814 1230 185 2 16 chr1 52161681 52161931 -190502422 + HUERS-P3 LTR ERV1 7158 8901 -18 780 141 23 51 chr1 52162030 52162207 -190502146 - HUERS-P3b LTR ERV1 -549 4331 4160 409 248 0 53 chr1 52162219 52162332 -190502021 - HUERS-P3b LTR ERV1 -466 6952 6846 * 4347 191 21 7 chr1 52162322 52163083 -190501270 - HUERS-P3b LTR ERV1 -1986 6933 6162 4323 125 49 5 chr1 52163068 52163716 -190500637 - HUERS-P3b LTR ERV1 -3342 5577 4901 * 710 234 21 28 chr1 52163717 52163862 -190500491 - HUERS-P3b LTR ERV1 -4237 4682 4539 * 6723 178 29 16 chr1 52163855 52165944 -190498409 - HUERS-P3b LTR ERV1 -5314 2104 794 1246 215 0 0 chr1 52165947 52166184 -190498169 - L1 LINE L1 -1869 4979 4743 254 283 94 0 chr1 52166332 52166438 -190497915 - MIR SINE MIR -30 232 117 1475 144 5 0 chr1 52166787 52167002 -190497351 + AluSx SINE Alu 1 216 -96 197 95 0 48 chr1 52167024 52167066 -190497287 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 559 224 171 7 chr1 52167229 52167381 -190496972 + MER5A DNA MER1_type 7 183 -6 184 219 98 0 chr1 52167406 52167447 -190496906 + L2 LINE L2 3186 3230 -42 33 66 0 0 chr1 52167613 52167674 -190496679 + AT_rich Low_complexity Low_complexity 1 61 0 219 319 29 0 chr1 52167750 52167819 -190496534 - MIR SINE MIR -80 128 58 1332 211 55 0 chr1 52168198 52168487 -190495866 + AluJo SINE Alu 2 306 -6 4481 71 12 25 chr1 52168542 52168687 -190495666 - L1PA11 LINE L1 -1 6173 6028 2237 106 10 7 chr1 52168687 52168990 -190495363 - AluSx SINE Alu -8 304 1 4481 71 12 25 chr1 52168990 52169434 -190494919 - L1PA11 LINE L1 -146 6028 5592 3907 171 41 12 chr1 52169435 52169806 -190494547 - L1P LINE L1 -1052 5094 4735 252 0 0 0 chr1 52169806 52169834 -190494519 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3907 171 41 12 chr1 52169834 52169881 -190494472 - L1P LINE L1 -1411 4735 4691 2048 128 14 3 chr1 52169881 52170177 -190494176 - AluSx SINE Alu -13 299 1 3907 171 41 12 chr1 52170177 52170493 -190493860 - L1P LINE L1 -1455 4691 4338 495 244 108 18 chr1 52170581 52170860 -190493493 - L1ME4a LINE L1 -135 5986 5683 248 267 98 67 chr1 52171888 52172113 -190492240 - L1ME3A LINE L1 -15 6155 5924 483 263 104 50 chr1 52172133 52172368 -190491985 - L1ME3A LINE L1 -202 5968 5716 3423 162 16 6 chr1 52172368 52172912 -190491441 + MER44D DNA MER2_type 1 605 0 483 263 104 50 chr1 52172912 52172935 -190491418 - L1ME3A LINE L1 -454 5716 5696 * 11865 181 29 31 chr1 52172934 52175246 -190489107 - L1 LINE L1 -2611 4237 1923 1868 149 11 11 chr1 52175246 52175528 -190488825 - AluJo SINE Alu -20 292 11 11865 181 29 31 chr1 52175528 52175642 -190488711 - L1 LINE L1 -4925 1923 1810 2200 127 0 3 chr1 52175642 52175956 -190488397 - AluSq SINE Alu 0 313 1 404 147 0 10 chr1 52175896 52175977 -190488376 - AluJ/FLAM SINE Alu -242 60 1 * 11865 181 29 31 chr1 52175977 52176978 -190487375 - L1 LINE L1 -5059 1789 755 597 68 0 0 chr1 52176978 52177052 -190487301 - AluSp/q SINE Alu -20 293 220 11865 181 29 31 chr1 52177052 52177801 -190486552 - L1 LINE L1 -6093 755 7 559 249 92 72 chr1 52179163 52179412 -190484941 - MIR SINE MIR -2 260 7 21 71 0 0 chr1 52181534 52181576 -190482777 + AT_rich Low_complexity Low_complexity 1 42 0 966 169 0 0 chr1 52182482 52182624 -190481729 + FRAM SINE Alu 12 153 -23 658 315 142 45 chr1 52183169 52183252 -190481101 + L1M4 LINE L1 2398 2471 -3675 2099 124 7 0 chr1 52183252 52183543 -190480810 - AluY SINE Alu -18 293 1 658 315 142 45 chr1 52183543 52184699 -190479654 + L1M4 LINE L1 2471 3786 -2360 556 139 213 0 chr1 52184699 52184807 -190479546 + FLAM_C SINE Alu 1 131 -2 658 315 142 45 chr1 52184807 52184937 -190479416 + L1M4 LINE L1 3786 3902 -2244 257 288 88 78 chr1 52185285 52185605 -190478748 + L2 LINE L2 2941 3263 -9 9056 34 0 0 chr1 52185685 52187519 -190476834 + L1PA4 LINE L1 4320 6154 -1 231 36 0 0 chr1 52188631 52188659 -190475694 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1175 143 0 12 chr1 52189529 52189697 -190474656 + AluSq SINE Alu 1 166 -147 310 252 90 36 chr1 52191235 52191346 -190473007 + L1M4 LINE L1 2270 2386 -3760 6617 177 22 20 chr1 52191355 52193622 -190470731 + L1PA16 LINE L1 3852 6124 -42 695 144 0 0 chr1 52193622 52193733 -190470620 + L1 LINE L1 4739 4849 -1297 247 229 42 141 chr1 52193743 52193935 -190470418 + L1MEc LINE L1 1741 1913 -4483 351 92 83 0 chr1 52193936 52194045 -190470308 + (TA)n Simple_repeat Simple_repeat 1 118 0 1508 250 69 71 chr1 52194053 52195008 -190469345 + L1MEc LINE L1 1831 2754 -3461 10703 36 1 0 chr1 52195008 52197037 -190467316 - L1PA4 LINE L1 -1 6154 4125 1508 250 69 71 chr1 52197037 52197238 -190467115 + L1MEc LINE L1 2754 2954 -3261 687 110 25 17 chr1 52197415 52197533 -190466820 - L1PA4 LINE L1 0 6155 6037 * 10781 36 3 0 chr1 52197507 52199564 -190464789 + L1PA4 LINE L1 4093 6152 -3 195 309 0 36 chr1 52199693 52199777 -190464576 - L3 LINE CR1 -455 1122 1042 1808 167 0 0 chr1 52199945 52200252 -190464101 + AluSx SINE Alu 1 307 0 613 315 60 4 chr1 52200638 52200873 -190463480 + MIR SINE MIR 13 260 -2 464 81 0 0 chr1 52201731 52201793 -190462560 + AluY SINE Alu 21 82 -229 9430 105 10 51 chr1 52201874 52203353 -190461000 - HERV17 LTR ERV1 -6823 1803 385 1346 107 0 0 chr1 52203353 52203549 -190460804 + L1PA5 LINE L1 5959 6154 0 1898 136 58 35 chr1 52203549 52203885 -190460468 + L1PA16 LINE L1 5814 6166 0 4937 64 23 0 chr1 52203891 52204072 -190460281 + L1PA16 LINE L1 4824 4985 -1181 1881 97 0 0 chr1 52204072 52204309 -190460044 + AluY SINE Alu 1 237 -74 4937 64 23 0 chr1 52204309 52204614 -190459739 + L1PA16 LINE L1 4985 5258 -908 8925 82 18 2 chr1 52204614 52205235 -190459118 - L1PA7 LINE L1 -6 6148 5539 3501 207 19 78 chr1 52205235 52206264 -190458089 + LTR5 LTR ERVK 1 969 0 8925 82 18 2 chr1 52206264 52207656 -190456697 - L1PA7 LINE L1 -615 5539 4120 4937 64 23 0 chr1 52207656 52208503 -190455850 + L1PA16 LINE L1 5258 6166 0 388 215 37 28 chr1 52209207 52209314 -190455039 + L2 LINE L2 3193 3300 -13 1527 118 36 5 chr1 52210580 52210801 -190453552 - MER30 DNA MER1_type 0 230 3 234 298 84 105 chr1 52211474 52211712 -190452641 + L2 LINE L2 3038 3270 -2 243 333 30 15 chr1 52211882 52212083 -190452270 - L2 LINE L2 -226 3046 2843 316 365 32 0 chr1 52217471 52217627 -190446726 + MIR SINE MIR 43 203 -59 355 274 48 7 chr1 52220903 52221049 -190443304 + (CCTG)n Simple_repeat Simple_repeat 1 152 0 4696 56 37 5 chr1 52221059 52221648 -190442705 + LTR14B LTR ERVK 1 608 0 203 274 32 0 chr1 52221677 52221739 -190442614 + (CCTG)n Simple_repeat Simple_repeat 1 64 0 1400 235 94 34 chr1 52221743 52222219 -190442134 - MLT1D LTR MaLR 0 505 1 1202 224 48 75 chr1 52222703 52223145 -190441208 - MSTB1 LTR MaLR 0 432 3 3324 205 59 13 chr1 52224230 52225107 -190439246 + L1MB4 LINE L1 5167 6093 -87 14520 141 86 23 chr1 52225114 52229197 -190435156 + L1PA8 LINE L1 5 4390 -2071 7457 36 5 1 chr1 52229197 52230213 -190434140 + L1PA3 LINE L1 5173 6155 0 21 36 0 0 chr1 52230213 52230241 -190434112 + AT_rich Low_complexity Low_complexity 1 28 0 8904 102 9 0 chr1 52230241 52232348 -190432005 + L1PA8 LINE L1 4383 6486 -1 320 197 0 0 chr1 52232513 52232584 -190431769 + L1MB3 LINE L1 6092 6162 -21 201 274 14 55 chr1 52232925 52232998 -190431355 - L3 LINE CR1 -466 1111 1042 668 271 85 34 chr1 52233536 52233772 -190430581 + MIR SINE MIR 13 260 -2 1485 247 36 38 chr1 52234661 52235163 -190429190 - MLT1D LTR MaLR -4 501 1 407 228 46 70 chr1 52235163 52235408 -190428945 - MLT1D-int LTR MaLR 0 1734 1238 900 237 13 0 chr1 52235476 52235708 -190428645 - MLT1D-int LTR MaLR -1136 235 1 665 226 8 8 chr1 52235759 52235892 -190428461 + FLAM_A SINE Alu 1 133 0 363 136 0 0 chr1 52235902 52235961 -190428392 + (GA)n Simple_repeat Simple_repeat 2 60 0 1114 237 103 19 chr1 52235979 52236397 -190427956 - MLT1D LTR MaLR -52 453 1 362 274 81 0 chr1 52236397 52236521 -190427832 - MLT1D-int LTR MaLR 0 1371 1238 207 162 0 0 chr1 52236910 52236947 -190427406 + CT-rich Low_complexity Low_complexity 4 40 0 2254 118 16 0 chr1 52236958 52237262 -190427091 - AluSq SINE Alu -4 309 1 2194 120 3 3 chr1 52237276 52237584 -190426769 - AluSg SINE Alu -2 308 1 42084 44 2 1 chr1 52237985 52244122 -190420231 + L1PA4 LINE L1 2 6148 -7 39 0 0 0 chr1 52244128 52244167 -190420186 + AT_rich Low_complexity Low_complexity 1 39 0 283 245 110 60 chr1 52244217 52244417 -190419936 - L1MCc LINE L1 -4935 1488 1279 584 196 29 7 chr1 52244837 52244975 -190419378 - MLT1A1 LTR MaLR -5 360 220 244 165 13 114 chr1 52244985 52245064 -190419289 - MLT1A1 LTR MaLR -73 317 247 1417 191 14 17 chr1 52245073 52245366 -190418987 - MLT1A1 LTR MaLR -73 292 1 2422 83 0 3 chr1 52246108 52246409 -190417944 + AluSg SINE Alu 1 300 -10 236 256 13 128 chr1 52246545 52246701 -190417652 + L1ME LINE L1 5528 5665 -456 263 189 94 0 chr1 52247327 52247380 -190416973 - L2 LINE L2 0 3272 3215 318 280 154 33 chr1 52247665 52247847 -190416506 - MIR SINE MIR -55 207 4 288 309 291 4 chr1 52247900 52248178 -190416175 - L2 LINE L2 -615 2699 2342 265 310 47 47 chr1 52248517 52248688 -190415665 - L2 LINE L2 -1371 1943 1773 181 284 164 0 chr1 52248713 52248780 -190415573 + L2 LINE L2 3133 3210 -62 405 0 0 0 chr1 52248783 52248828 -190415525 + (CA)n Simple_repeat Simple_repeat 1 45 0 440 280 87 13 chr1 52248868 52249018 -190415335 + MIR SINE MIR 32 192 -70 4081 78 45 21 chr1 52249077 52249218 -190415135 + L1PA10 LINE L1 5546 5682 -486 2144 116 0 32 chr1 52249218 52249529 -190414824 + AluSx SINE Alu 1 301 -11 4081 78 45 21 chr1 52249529 52249991 -190414362 + L1PA10 LINE L1 5682 6163 -5 245 309 0 12 chr1 52250080 52250164 -190414189 + C-rich Low_complexity Low_complexity 3 85 0 220 355 28 35 chr1 52250350 52250491 -190413862 + MIR3 SINE MIR 62 201 -7 513 294 97 13 chr1 52250548 52250776 -190413577 - MIR SINE MIR -3 259 13 319 256 99 41 chr1 52250970 52251091 -190413262 - MER91A DNA MER1_type 0 196 69 293 0 27 0 chr1 52251159 52251196 -190413157 + (TC)n Simple_repeat Simple_repeat 1 38 0 269 344 117 13 chr1 52251916 52252070 -190412283 - MIR SINE MIR -79 183 14 189 0 0 0 chr1 52252088 52252109 -190412244 + (A)n Simple_repeat Simple_repeat 1 21 0 290 286 10 50 chr1 52252959 52253147 -190411206 + GA-rich Low_complexity Low_complexity 1 296 0 275 358 17 0 chr1 52254270 52254390 -190409963 - MIR SINE MIR -71 137 16 274 343 37 0 chr1 52254870 52254978 -190409375 - MIR SINE MIR -67 141 30 2333 92 10 0 chr1 52258089 52258394 -190405959 + AluSq SINE Alu 1 308 -5 330 290 69 30 chr1 52258560 52258691 -190405662 - MER91A DNA MER1_type -2 194 59 295 294 126 41 chr1 52258734 52259003 -190405350 + L2 LINE L2 2921 3212 -60 212 297 121 55 chr1 52259144 52259309 -190405044 + MIR3 SINE MIR 5 180 -28 947 138 0 7 chr1 52260228 52260366 -190403987 - AluJo SINE Alu -175 137 1 436 226 26 22 chr1 52261376 52261517 -190402836 - MIR SINE MIR -63 145 47 611 13 13 0 chr1 52263446 52263522 -190400831 + (TG)n Simple_repeat Simple_repeat 2 78 0 306 311 151 62 chr1 52263784 52264495 -190399858 - L2 LINE L2 -571 2743 1970 2157 112 14 0 chr1 52265507 52265802 -190398551 - AluSx SINE Alu -13 299 1 384 298 119 68 chr1 52265977 52266390 -190397963 + L2 LINE L2 2836 3269 -3 251 261 14 0 chr1 52266393 52266462 -190397891 + L2 LINE L2 3202 3271 -1 183 224 145 40 chr1 52266467 52266543 -190397810 + L2 LINE L2 3122 3205 -67 244 290 40 48 chr1 52266571 52266695 -190397658 + L3 LINE CR1 1382 1504 -73 1146 227 15 66 chr1 52266695 52267030 -190397323 - MLT1A1 LTR MaLR 0 365 48 1312 112 0 6 chr1 52267032 52267211 -190397142 - AluSq SINE Alu -4 309 132 247 200 36 0 chr1 52267211 52267266 -190397087 - MLT1A1 LTR MaLR -308 57 1 1385 161 95 129 chr1 52267454 52267541 -190396812 + Charlie4a DNA MER1_type 22 110 -1851 2353 110 3 0 chr1 52267541 52267851 -190396502 + AluSq SINE Alu 1 311 -2 1385 161 95 129 chr1 52267851 52268148 -190396205 + Charlie4a DNA MER1_type 110 388 -1573 2095 128 0 3 chr1 52268148 52268436 -190395917 + AluSx SINE Alu 1 287 -25 1385 161 95 129 chr1 52268436 52268546 -190395807 + Charlie4a DNA MER1_type 388 500 -8 506 349 47 0 chr1 52269035 52269227 -190395126 - MIR3 SINE MIR -6 202 2 187 139 111 0 chr1 52269275 52269311 -190395042 - L2 LINE L2 0 3313 3274 2106 124 8 51 chr1 52269324 52269552 -190394801 - MER46B DNA MER2_type -2502 229 146 1971 101 36 22 chr1 52269552 52269864 -190394489 - AluSp SINE Alu 0 316 1 2106 124 8 51 chr1 52269864 52270004 -190394349 - MER46B DNA MER2_type -2585 146 1 352 111 37 62 chr1 52269933 52270014 -190394339 + MER46A DNA MER2_type 75 153 -83 * 1326 211 201 32 chr1 52270150 52271083 -190393270 - L2 LINE L2 0 3313 2232 2515 89 0 0 chr1 52271652 52271965 -190392388 - AluSq SINE Alu 0 313 1 211 259 19 0 chr1 52272032 52272086 -190392267 - L2 LINE L2 -2 3270 3216 286 327 9 0 chr1 52272207 52272314 -190392039 - L2 LINE L2 -1005 2309 2202 460 343 134 12 chr1 52272599 52272853 -190391500 + L3 LINE CR1 1183 1467 -110 554 294 85 55 chr1 52273530 52273765 -190390588 - MIR SINE MIR -20 242 1 377 257 0 0 chr1 52273866 52273940 -190390413 - L2 LINE L2 -213 3059 2986 431 208 87 77 chr1 52274012 52274219 -190390134 + L1MC5 LINE L1 7730 7938 -23 2098 124 17 0 chr1 52274237 52274536 -190389817 + AluSx SINE Alu 1 304 -8 206 174 22 0 chr1 52274633 52274679 -190389674 + GA-rich Low_complexity Low_complexity 4 50 0 5395 145 28 6 chr1 52274697 52276443 -190387910 + L1MA4A LINE L1 4358 6136 -167 249 132 0 0 chr1 52276444 52276482 -190387871 + AluSq SINE Alu 2 39 -269 876 311 76 33 chr1 52276490 52276940 -190387413 + L2 LINE L2 1995 2463 -851 1995 105 4 0 chr1 52276940 52277197 -190387156 + AluSq SINE Alu 39 296 -17 1237 71 6 0 chr1 52277197 52277366 -190386987 + L1MA4A LINE L1 6133 6302 -1 489 346 32 9 chr1 52277385 52277602 -190386751 + MIR SINE MIR 1 222 -40 1469 254 116 54 chr1 52277631 52278106 -190386247 + L2 LINE L2 2203 2647 -666 1900 157 33 0 chr1 52278106 52278406 -190385947 + AluJo SINE Alu 1 310 -2 1469 254 116 54 chr1 52278406 52278755 -190385598 + L2 LINE L2 2647 2973 -340 399 21 0 0 chr1 52278755 52278803 -190385550 + (CA)n Simple_repeat Simple_repeat 2 49 0 1469 254 116 54 chr1 52278803 52278982 -190385371 + L2 LINE L2 2973 3265 -48 1659 37 0 0 chr1 52278982 52279171 -190385182 + AluY SINE Alu 122 310 -1 1469 254 116 54 chr1 52279171 52279211 -190385142 + L2 LINE L2 3265 3301 -12 1470 244 81 9 chr1 52279403 52279858 -190384495 - Charlie4a DNA MER1_type 0 508 21 390 254 87 24 chr1 52281918 52282044 -190382309 + MIR SINE MIR 16 149 -113 267 233 172 17 chr1 52282578 52282694 -190381659 + L2 LINE L2 2625 2758 -556 343 310 103 17 chr1 52282720 52282952 -190381401 + L2 LINE L2 2834 3085 -187 842 183 18 105 chr1 52283076 52283156 -190381197 - MER3 DNA MER1_type 0 209 124 1960 128 31 0 chr1 52283156 52283445 -190380908 + AluSq SINE Alu 1 298 -15 842 183 18 105 chr1 52283445 52283593 -190380760 - MER3 DNA MER1_type -85 124 1 550 269 134 0 chr1 52284772 52284943 -190379410 - MIR SINE MIR -49 213 20 309 315 47 8 chr1 52285212 52285339 -190379014 + MIR3 SINE MIR 33 164 -44 229 325 78 19 chr1 52286341 52286495 -190377858 + MIR3 SINE MIR 33 195 -13 602 282 61 30 chr1 52286601 52286863 -190377490 + L2 LINE L2 1813 2082 -1232 628 217 14 118 chr1 52287237 52287449 -190376904 + L2 LINE L2 3119 3308 -5 225 184 40 105 chr1 52287559 52287635 -190376718 + AluJo SINE Alu 64 134 -168 1606 187 3 28 chr1 52289158 52289447 -190374906 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr1 52289448 52289472 -190374881 + (CA)n Simple_repeat Simple_repeat 1 24 0 186 103 0 0 chr1 52291955 52291984 -190372369 + (CCCCCA)n Simple_repeat Simple_repeat 5 33 0 244 411 51 21 chr1 52292320 52292556 -190371797 + L2 LINE L2 2956 3198 -74 541 283 34 25 chr1 52292593 52292812 -190371541 + MIR SINE MIR 42 262 0 469 151 57 28 chr1 52292839 52292945 -190371408 - L2 LINE L2 -42 3271 3163 220 242 16 16 chr1 52293760 52293822 -190370531 - MIR3 SINE MIR -29 179 118 598 256 85 0 chr1 52294392 52294556 -190369797 + MIR SINE MIR 78 255 -7 225 65 0 0 chr1 52296299 52296330 -190368023 + (CA)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr1 52296464 52296490 -190367863 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chr1 52297543 52297568 -190366785 + GC_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 52297631 52297661 -190366692 + GC_rich Low_complexity Low_complexity 1 30 0 31 58 0 0 chr1 52297736 52297788 -190366565 + GC_rich Low_complexity Low_complexity 1 52 0 218 226 11 54 chr1 52298178 52298271 -190366082 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 180 0 0 0 chr1 52298587 52298607 -190365746 + (CA)n Simple_repeat Simple_repeat 1 20 0 218 278 0 0 chr1 52301438 52301492 -190362861 + GA-rich Low_complexity Low_complexity 1 54 0 229 205 12 24 chr1 52302077 52302160 -190362193 + GA-rich Low_complexity Low_complexity 4 85 0 245 184 26 40 chr1 52303352 52303428 -190360925 + C-rich Low_complexity Low_complexity 2 76 0 205 192 19 0 chr1 52304285 52304337 -190360016 + C-rich Low_complexity Low_complexity 4 56 0 473 291 109 6 chr1 52305045 52305220 -190359133 - MIR SINE MIR -41 221 29 310 225 125 0 chr1 52305424 52305504 -190358849 + MIR SINE MIR 98 187 -75 253 355 47 0 chr1 52305613 52305744 -190358609 - MIR SINE MIR -69 139 2 243 326 0 22 chr1 52306081 52306170 -190358183 + MIR SINE MIR 34 120 -88 216 304 22 72 chr1 52306215 52306412 -190357941 - L2 LINE L2 -262 3051 2871 426 330 51 29 chr1 52306521 52306693 -190357660 - L2 LINE L2 -641 2673 2506 2405 93 0 0 chr1 52306693 52306994 -190357359 + AluSc SINE Alu 1 301 -8 426 330 51 29 chr1 52306994 52307172 -190357181 - L2 LINE L2 -808 2506 2315 767 237 100 5 chr1 52307989 52308179 -190356174 - MIR SINE MIR -22 240 33 412 293 29 40 chr1 52308201 52308375 -190355978 + MIR SINE MIR 21 192 -70 757 165 118 12 chr1 52308584 52308754 -190355599 + MER5A DNA MER1_type 1 188 -1 2316 111 0 7 chr1 52308820 52308983 -190355370 - AluSx SINE Alu -16 296 134 2344 115 0 3 chr1 52308983 52309287 -190355066 - AluSx SINE Alu -9 303 1 2316 111 0 7 chr1 52309287 52309421 -190354932 - AluSx SINE Alu -178 134 1 181 246 87 14 chr1 52309801 52309870 -190354483 - MIR SINE MIR -75 187 114 2624 202 77 30 chr1 52310037 52310594 -190353759 + L1ME2 LINE L1 5353 5957 -207 2133 92 82 0 chr1 52310594 52310875 -190353478 - AluSq SINE Alu -9 304 1 2624 202 77 30 chr1 52310875 52311083 -190353270 + L1ME2 LINE L1 5957 6154 -10 209 283 9 38 chr1 52311496 52311602 -190352751 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 503 224 58 45 chr1 52311946 52312102 -190352251 + MIR SINE MIR 1 158 -104 1838 87 0 4 chr1 52312106 52312336 -190352017 + AluSx SINE Alu 1 229 -83 1440 102 16 0 chr1 52312360 52312547 -190351806 - AluSq SINE Alu -92 221 32 622 74 0 0 chr1 52312590 52312671 -190351682 - AluSg/x SINE Alu -15 295 215 207 157 39 20 chr1 52312678 52312729 -190351624 + MIR SINE MIR 94 145 -63 214 215 77 31 chr1 52312744 52312809 -190351544 - L2 LINE L2 -1 3271 3204 2476 73 3 0 chr1 52312972 52313272 -190351081 - AluY SINE Alu -10 301 1 386 232 27 36 chr1 52314174 52314286 -190350067 + MIR SINE MIR 21 131 -131 868 152 0 0 chr1 52314332 52314457 -190349896 + AluJb SINE Alu 1 125 -187 652 247 123 14 chr1 52314458 52314677 -190349676 + MIR SINE MIR 20 262 0 213 274 0 41 chr1 52315116 52315189 -190349164 + L2 LINE L2 3188 3257 -15 195 211 0 77 chr1 52315206 52315258 -190349095 - L2 LINE L2 -76 3196 3149 341 42 0 21 chr1 52315310 52315358 -190348995 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 1105 152 83 46 chr1 52315358 52315575 -190348778 - AluJo SINE Alu -87 225 1 416 299 84 7 chr1 52315875 52316029 -190348324 + MIR3 SINE MIR 33 198 -10 336 294 200 12 chr1 52316587 52316747 -190347606 - MIR3 SINE MIR -3 205 16 245 311 176 0 chr1 52317009 52317128 -190347225 + L2 LINE L2 3127 3266 -6 189 276 69 69 chr1 52317207 52317381 -190346972 + MIR SINE MIR 48 221 -41 203 250 0 19 chr1 52317777 52317829 -190346524 + L2 LINE L2 3015 3065 -207 334 261 85 46 chr1 52317912 52317965 -190346388 + MIR SINE MIR 92 141 -121 2558 118 38 14 chr1 52317965 52318183 -190346170 - MSTC LTR MaLR 0 428 217 1958 96 118 0 chr1 52318183 52318454 -190345899 - AluSc SINE Alu -6 303 1 2558 118 38 14 chr1 52318454 52318652 -190345701 - MSTC LTR MaLR -211 217 2 334 261 85 46 chr1 52318652 52318751 -190345602 + MIR SINE MIR 141 250 -12 2273 105 7 0 chr1 52319235 52319529 -190344824 - AluSx SINE Alu -16 296 1 470 127 0 0 chr1 52319617 52319688 -190344665 - MSTB LTR MaLR 0 428 358 772 171 123 48 chr1 52319712 52319899 -190344454 - MSTB LTR MaLR -227 201 1 2307 96 7 7 chr1 52320057 52320359 -190343994 + AluSx SINE Alu 1 302 -10 1478 198 56 72 chr1 52321058 52321347 -190343006 + L1MD3 LINE L1 5818 6110 -1885 2188 107 7 0 chr1 52321347 52321628 -190342725 + AluSg SINE Alu 9 291 -19 2069 148 3 0 chr1 52321634 52321937 -190342416 + AluSx SINE Alu 1 304 -8 1478 198 56 72 chr1 52321937 52322168 -190342185 + L1MD3 LINE L1 6115 7976 -19 2315 86 7 0 chr1 52322598 52322889 -190341464 + AluSp SINE Alu 1 293 -20 1937 181 0 9 chr1 52324159 52324474 -190339879 + AluJo SINE Alu 1 312 0 414 0 0 0 chr1 52324839 52324885 -190339468 + (CA)n Simple_repeat Simple_repeat 2 47 0 536 166 16 171 chr1 52324989 52325176 -190339177 - FRAM SINE Alu -18 158 1 255 211 42 28 chr1 52325183 52325254 -190339099 - MIR SINE MIR -15 247 176 435 236 84 118 chr1 52325254 52325550 -190338803 + L2 LINE L2 3027 3312 -1 306 243 122 27 chr1 52325554 52325702 -190338651 - MIR SINE MIR -100 162 1 2499 89 0 6 chr1 52325957 52326271 -190338082 + AluSx SINE Alu 1 312 0 2041 144 10 23 chr1 52326590 52326895 -190337458 - AluJb SINE Alu -11 301 1 580 183 16 32 chr1 52327071 52327197 -190337156 + FLAM_A SINE Alu 3 126 -7 1271 141 26 5 chr1 52327438 52327629 -190336724 + AluJb SINE Alu 108 302 -10 2308 99 0 0 chr1 52328406 52328700 -190335653 + AluSg SINE Alu 6 299 -11 2073 90 4 14 chr1 52328773 52329051 -190335302 + AluSp SINE Alu 1 275 -38 250 336 42 56 chr1 52329062 52329205 -190335148 - L2 LINE L2 -211 3061 2921 827 192 6 84 chr1 52329416 52329583 -190334770 + FRAM SINE Alu 9 162 -14 358 274 86 115 chr1 52329743 52329977 -190334376 + L2 LINE L2 3046 3272 0 313 248 124 20 chr1 52330032 52330185 -190334168 + L1ME LINE L1 5561 5729 -392 866 269 100 19 chr1 52330292 52330612 -190333741 + L1MC4a LINE L1 5520 5865 -1943 1793 157 16 19 chr1 52330647 52330960 -190333393 + AluJo SINE Alu 1 312 0 2408 75 7 0 chr1 52331053 52331346 -190333007 - AluY SINE Alu -16 295 1 2225 86 7 16 chr1 52331346 52331649 -190332704 - AluSg SINE Alu -10 300 1 21 71 0 0 chr1 52331748 52331790 -190332563 + AT_rich Low_complexity Low_complexity 1 42 0 37 0 0 0 chr1 52332282 52332319 -190332034 + AT_rich Low_complexity Low_complexity 1 37 0 1752 154 33 23 chr1 52332651 52332956 -190331397 + AluJo SINE Alu 1 308 -4 2214 126 0 0 chr1 52333166 52333475 -190330878 + AluSx SINE Alu 1 309 -3 2163 116 3 20 chr1 52333522 52333823 -190330530 + AluSx SINE Alu 4 299 -13 1177 123 25 0 chr1 52333823 52333985 -190330368 + AluSg/x SINE Alu 134 299 -13 1429 211 24 7 chr1 52335325 52335623 -190328730 + AluJo SINE Alu 1 303 -9 2413 101 0 0 chr1 52335805 52336113 -190328240 - AluSx SINE Alu -4 308 1 950 204 11 5 chr1 52336204 52336390 -190327963 + MLT1A1 LTR MaLR 133 319 -46 22 0 0 0 chr1 52336473 52336495 -190327858 + AT_rich Low_complexity Low_complexity 1 22 0 2179 132 0 0 chr1 52337018 52337321 -190327032 + AluSx SINE Alu 5 307 -5 1558 163 66 28 chr1 52337527 52337559 -190326794 - AluJb SINE Alu -11 301 272 2299 93 6 16 chr1 52337559 52337871 -190326482 + AluSx SINE Alu 1 309 -3 1558 163 66 28 chr1 52337871 52338127 -190326226 - AluJb SINE Alu -40 272 2 1103 205 4 31 chr1 52338422 52338651 -190325702 - AluJo SINE Alu -16 296 74 992 302 99 27 chr1 52338716 52339447 -190324906 + L2 LINE L2 2521 3305 -8 1566 134 131 8 chr1 52339483 52339751 -190324602 + AluSg1 SINE Alu 1 301 -8 1010 143 0 0 chr1 52339769 52339936 -190324417 - AluSg/x SINE Alu 0 299 133 487 241 123 9 chr1 52339993 52340205 -190324148 - L1MC5 LINE L1 -48 7913 7678 2035 127 3 3 chr1 52340232 52340531 -190323822 + AluSx SINE Alu 8 306 -6 2011 133 0 11 chr1 52340533 52340861 -190323492 + AluSq SINE Alu 1 325 0 2271 64 27 14 chr1 52340873 52341168 -190323185 + AluY SINE Alu 2 300 -11 1058 166 58 0 chr1 52341442 52341647 -190322706 + L1MA7 LINE L1 6070 6286 -5 1914 118 45 14 chr1 52342015 52342303 -190322050 + AluJb SINE Alu 1 297 -15 351 0 0 0 chr1 52342316 52342355 -190321998 + (CA)n Simple_repeat Simple_repeat 2 40 0 1995 162 0 3 chr1 52342731 52343039 -190321314 - AluJb SINE Alu -5 307 1 248 324 0 0 chr1 52343236 52343304 -190321049 + MER113 DNA MER1_type? 454 521 0 2036 110 45 17 chr1 52343349 52343639 -190320714 + AluSg SINE Alu 3 300 -10 1066 160 0 31 chr1 52343704 52343898 -190320455 + AluSg/x SINE Alu 122 309 -1 1493 174 0 16 chr1 52344509 52344767 -190319586 - AluJb SINE Alu -15 297 44 462 293 56 60 chr1 52345026 52345241 -190319112 - MIR SINE MIR 0 262 49 3018 154 36 8 chr1 52345265 52345786 -190318567 - L1MB7 LINE L1 -19 6165 5630 259 304 157 10 chr1 52345961 52346063 -190318290 + MIR SINE MIR 11 127 -135 314 280 53 60 chr1 52346107 52346257 -190318096 - MIR SINE MIR -13 249 101 2198 63 60 11 chr1 52346393 52346677 -190317676 - AluY SINE Alu -13 298 1 1918 130 22 0 chr1 52346931 52347229 -190317124 + AluSx SINE Alu 2 305 0 2333 71 0 0 chr1 52347388 52347689 -190316664 + AluY SINE Alu 2 302 0 1817 176 0 7 chr1 52347691 52347987 -190316366 - AluJb SINE Alu -18 294 1 2307 100 3 0 chr1 52348063 52348362 -190315991 - AluSx SINE Alu -12 300 1 234 91 0 0 chr1 52348457 52348490 -190315863 + (CATATA)n Simple_repeat Simple_repeat 1 33 0 2221 108 3 19 chr1 52348586 52348900 -190315453 + AluSq SINE Alu 1 309 -4 270 293 104 47 chr1 52349057 52349163 -190315190 - L2 LINE L2 -1 3271 3160 805 314 48 57 chr1 52349198 52349766 -190314587 - L2 LINE L2 -298 3015 2403 284 221 47 12 chr1 52349783 52349869 -190314484 - MIR SINE MIR 0 262 174 282 246 16 0 chr1 52349950 52350011 -190314342 - MIR SINE MIR -114 148 87 7234 88 5 9 chr1 52350111 52351078 -190313275 + HERV17 LTR ERV1 841 1803 -6823 490 81 0 0 chr1 52351159 52351221 -190313132 - AluY SINE Alu -228 82 21 682 315 60 4 chr1 52352078 52352313 -190312040 - MIR SINE MIR -2 260 13 1787 167 0 0 chr1 52352699 52353006 -190311347 - AluSx SINE Alu 0 307 1 219 309 0 36 chr1 52353174 52353258 -190311095 + L3 LINE CR1 1042 1122 -455 44027 48 3 1 chr1 52353387 52359525 -190304828 - L1PA4 LINE L1 -3 6152 2 2151 116 3 3 chr1 52359926 52360228 -190304125 + AluSg SINE Alu 1 302 -8 2210 118 16 0 chr1 52360248 52360552 -190303801 + AluSq SINE Alu 1 309 -4 207 162 0 0 chr1 52360563 52360600 -190303753 + GA-rich Low_complexity Low_complexity 4 40 0 382 258 81 0 chr1 52360989 52361113 -190303240 + MLT1-int LTR MaLR 1238 1371 0 1234 237 103 19 chr1 52361113 52361531 -190302822 + MLT1D LTR MaLR 1 453 -52 363 136 0 0 chr1 52361549 52361608 -190302745 + (TC)n Simple_repeat Simple_repeat 2 60 0 702 226 8 8 chr1 52361618 52361751 -190302602 - FLAM_A SINE Alu 0 133 1 986 237 13 0 chr1 52361802 52362034 -190302319 + MLT1D-int LTR MaLR 1 235 -1136 441 228 46 70 chr1 52362102 52362347 -190302006 + MLT1D-int LTR MaLR 1238 1371 0 1593 243 36 38 chr1 52362347 52362849 -190301504 + MLT1D LTR MaLR 1 501 -4 637 271 85 34 chr1 52363738 52363974 -190300379 - MIR SINE MIR -2 260 13 11037 28 1 2 chr1 52364484 52366320 -190298033 - L1PA5 LINE L1 -226 5928 4093 687 125 8 17 chr1 52366294 52366414 -190297939 + L1PA4 LINE L1 6037 6155 0 * 463 237 134 27 chr1 52366589 52366775 -190297578 - L1M4 LINE L1 -3261 2885 2680 10412 37 2 8 chr1 52366790 52368102 -190296251 + L1P LINE L1 4125 5429 -726 2372 81 3 0 chr1 52418139 52418446 -190245907 - AluY SINE Alu -3 308 1 199 279 101 0 chr1 52418872 52418951 -190245402 + MIR SINE MIR 65 151 -111 1712 189 0 10 chr1 52419076 52419378 -190244975 + AluJo SINE Alu 7 305 -7 756 160 24 0 chr1 52419536 52419661 -190244692 + MSTD LTR MaLR 1 128 -268 2111 132 7 0 chr1 52419699 52420003 -190244350 + AluSq SINE Alu 1 306 -7 318 170 0 0 chr1 52420063 52420110 -190244243 + MSTD LTR MaLR 235 281 -115 641 275 71 75 chr1 52420112 52420216 -190244137 + L1MC4a LINE L1 4410 4513 -1633 2468 63 0 13 chr1 52420216 52420518 -190243835 + AluY SINE Alu 1 298 -13 1964 157 0 0 chr1 52420522 52420815 -190243538 + AluSx SINE Alu 1 293 -19 641 275 71 75 chr1 52420815 52421531 -190242822 + L1MC4a LINE L1 4516 5232 -914 2112 120 7 10 chr1 52421578 52421870 -190242483 + AluSx SINE Alu 1 291 -21 1885 120 124 0 chr1 52421870 52422137 -190242216 + AluSg SINE Alu 1 300 0 2078 132 17 0 chr1 52422137 52422424 -190241929 + AluSx SINE Alu 1 292 -20 580 258 136 48 chr1 52422486 52422871 -190241482 + L1MC4a LINE L1 5461 5786 -335 1718 153 14 28 chr1 52423152 52423440 -190240913 - AluJo SINE Alu -28 284 1 2153 110 0 0 chr1 52423466 52423757 -190240596 + AluSx SINE Alu 1 291 -21 2376 154 59 39 chr1 52425138 52425319 -190239034 + L1MB4 LINE L1 5143 5319 -861 2161 139 0 3 chr1 52425319 52425629 -190238724 - AluSx SINE Alu -3 309 1 2376 154 59 39 chr1 52425629 52426104 -190238249 + L1MB4 LINE L1 5319 5870 -310 578 161 0 0 chr1 52426219 52426306 -190238047 + FRAM SINE Alu 74 160 -16 265 331 36 36 chr1 52426426 52426565 -190237788 - L2 LINE L2 -180 3092 2954 2387 100 3 0 chr1 52426721 52427022 -190237331 - AluSx SINE Alu -10 302 1 201 290 29 0 chr1 52427043 52427112 -190237241 + L2 LINE L2 3160 3230 -83 186 43 0 0 chr1 52427135 52427158 -190237195 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2105 104 0 4 chr1 52427164 52427442 -190236911 - AluSx SINE Alu -35 277 1 870 210 20 20 chr1 52427497 52427692 -190236661 - MER119 DNA MER1_type -1 582 388 1535 76 0 0 chr1 52427717 52427902 -190236451 - AluY SINE Alu -11 300 116 608 103 0 0 chr1 52427902 52427980 -190236373 - AluY SINE Alu -232 79 2 1977 129 42 0 chr1 52427981 52428268 -190236085 - AluSq SINE Alu -14 299 1 2203 89 0 38 chr1 52428268 52428584 -190235769 - AluSg SINE Alu -6 304 1 564 168 84 0 chr1 52428586 52428693 -190235660 - MER119 DNA MER1_type -204 379 264 2077 126 3 0 chr1 52428717 52429027 -190235326 - AluSx SINE Alu -1 311 1 192 200 0 0 chr1 52429047 52429092 -190235261 + C-rich Low_complexity Low_complexity 5 49 0 1487 108 28 0 chr1 52429094 52429307 -190235046 - AluSq SINE Alu -94 219 1 563 172 0 9 chr1 52429324 52429440 -190234913 + CT-rich Low_complexity Low_complexity 2 116 0 694 222 65 52 chr1 52429447 52429463 -190234890 - MER119 DNA MER1_type -308 275 261 1513 181 4 0 chr1 52429463 52429733 -190234620 - AluJo SINE Alu -41 271 1 694 222 65 52 chr1 52429733 52429835 -190234518 - MER119 DNA MER1_type -322 261 162 1835 133 0 18 chr1 52429835 52430155 -190234198 - AluSx SINE Alu 0 315 1 694 222 65 52 chr1 52430155 52430264 -190234089 - MER119 DNA MER1_type -421 162 43 304 200 226 61 chr1 52431532 52431647 -190232706 + MIR3 SINE MIR 32 165 -43 23 0 0 0 chr1 52431914 52431937 -190232416 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr1 52431972 52431998 -190232355 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2157 98 3 3 chr1 52432035 52432330 -190232023 - AluSx SINE Alu -17 295 1 740 192 0 0 chr1 52432339 52432459 -190231894 - FLAM_C SINE Alu -19 124 5 1307 199 13 59 chr1 52432468 52432775 -190231578 - AluJb SINE Alu -8 294 2 977 99 7 14 chr1 52432920 52433062 -190231291 - AluSq/x SINE Alu -171 141 1 639 133 0 0 chr1 52433094 52433184 -190231169 - AluS SINE Alu -222 91 2 186 264 94 0 chr1 52434067 52434120 -190230233 + L2 LINE L2 3205 3262 -10 3785 119 66 38 chr1 52434194 52434486 -190229867 - LTR51 LTR ERV1 0 671 389 2144 101 0 3 chr1 52434486 52434784 -190229569 + AluSc SINE Alu 5 301 -8 3785 119 66 38 chr1 52434784 52435144 -190229209 - LTR51 LTR ERV1 -282 389 1 2208 94 10 0 chr1 52435245 52435543 -190228810 - AluSp SINE Alu -12 301 1 2206 84 10 3 chr1 52435543 52435841 -190228512 - AluSq SINE Alu -13 300 1 1238 72 0 0 chr1 52435843 52435996 -190228357 - AluSq SINE Alu -30 283 131 427 192 0 0 chr1 52436458 52436531 -190227822 - Tigger5 DNA MER2_type 0 2323 2251 278 169 65 78 chr1 52436529 52436606 -190227747 + Tigger5 DNA MER2_type 2242 2317 -6 * 485 167 13 0 chr1 52436608 52436686 -190227667 - Tigger5 DNA MER2_type -2244 79 1 1839 99 14 48 chr1 52436719 52437041 -190227312 + AluSx SINE Alu 1 312 0 1963 128 0 0 chr1 52437041 52437329 -190227024 + AluSg SINE Alu 6 293 -17 2237 74 10 3 chr1 52437692 52437990 -190226363 - AluY SINE Alu -11 300 1 288 148 90 19 chr1 52437990 52438145 -190226208 + (TA)n Simple_repeat Simple_repeat 2 167 0 1484 191 38 0 chr1 52438146 52438434 -190225919 - AluJo SINE Alu -13 299 1 1894 167 0 0 chr1 52438725 52439024 -190225329 + AluJb SINE Alu 1 299 -13 1935 127 28 0 chr1 52439285 52439576 -190224777 + AluSx SINE Alu 1 299 -13 2158 103 0 3 chr1 52440107 52440399 -190223954 - AluSx SINE Alu -21 291 1 711 178 34 0 chr1 52440425 52440543 -190223810 - FLAM_C SINE Alu -20 123 2 993 189 0 16 chr1 52441128 52441313 -190223040 - AluJb SINE Alu -2 310 129 2185 90 20 0 chr1 52441316 52441617 -190222736 - AluSg SINE Alu -3 307 1 302 195 23 81 chr1 52441699 52441786 -190222567 - L1ME4a LINE L1 0 6121 6040 1283 185 133 15 chr1 52442053 52442323 -190222030 + AluJb SINE Alu 1 302 0 1607 165 14 7 chr1 52442380 52442679 -190221674 - AluJb SINE Alu 0 301 1 2362 80 0 6 chr1 52442922 52443233 -190221120 - AluSc SINE Alu 0 309 1 22 0 0 0 chr1 52443236 52443258 -190221095 + AT_rich Low_complexity Low_complexity 1 22 0 2217 84 0 28 chr1 52443270 52443590 -190220763 - AluY SINE Alu 0 311 1 180 0 0 0 chr1 52443733 52443753 -190220600 + (TA)n Simple_repeat Simple_repeat 1 20 0 2033 93 0 7 chr1 52443755 52444061 -190220292 - AluSc SINE Alu 0 304 1 1005 245 111 87 chr1 52444875 52445631 -190218722 + HAL1 LINE L1 1709 2482 -25 2107 104 7 10 chr1 52445640 52445939 -190218414 - AluSx SINE Alu -14 298 1 230 306 91 25 chr1 52446973 52447094 -190217259 - L2 LINE L2 -26 3246 3118 463 169 190 70 chr1 52447222 52447302 -190217051 - MER5A DNA MER1_type -22 167 98 692 181 0 23 chr1 52447302 52447435 -190216918 - FLAM_C SINE Alu -3 130 1 463 169 190 70 chr1 52447435 52447496 -190216857 - MER5A DNA MER1_type -91 98 9 368 279 27 9 chr1 52447534 52447645 -190216708 + L2 LINE L2 3164 3276 -37 21 0 0 0 chr1 52448074 52448095 -190216258 + AT_rich Low_complexity Low_complexity 1 21 0 210 249 18 53 chr1 52448904 52449073 -190215280 + (CGGGG)n Simple_repeat Simple_repeat 1 163 0 23 0 0 0 chr1 52449179 52449202 -190215151 + GC_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr1 52449224 52449259 -190215094 + GC_rich Low_complexity Low_complexity 1 35 0 2055 120 0 7 chr1 52449795 52450094 -190214259 + AluSx SINE Alu 1 297 -15 1846 110 0 66 chr1 52450097 52450422 -190213931 + AluSg SINE Alu 3 307 0 831 328 111 32 chr1 52450683 52451523 -190212830 + L2 LINE L2 1687 2597 -717 1533 98 0 9 chr1 52451523 52451748 -190212605 - AluSg/x SINE Alu -5 304 82 831 328 111 32 chr1 52451748 52451761 -190212592 + L2 LINE L2 2597 2608 -706 357 199 37 137 chr1 52452071 52452232 -190212121 - L1ME4a LINE L1 -13 6108 5964 204 125 0 0 chr1 52452232 52452264 -190212089 + (T)n Simple_repeat Simple_repeat 1 32 0 2211 96 10 0 chr1 52452953 52453256 -190211097 + AluSx SINE Alu 1 306 -6 2055 120 23 0 chr1 52453495 52453795 -190210558 - AluSx SINE Alu -5 307 1 411 175 361 0 chr1 52454854 52454951 -190209402 + FLAM_C SINE Alu 2 133 0 29 70 0 0 chr1 52455479 52455536 -190208817 + AT_rich Low_complexity Low_complexity 1 57 0 25 31 0 0 chr1 52455591 52455623 -190208730 + AT_rich Low_complexity Low_complexity 1 32 0 35 19 0 19 chr1 52455735 52455766 -190208587 + AT_rich Low_complexity Low_complexity 1 32 -20 2167 97 0 0 chr1 52455766 52456054 -190208299 - AluSx SINE Alu -24 288 1 35 19 0 19 chr1 52456054 52456075 -190208278 + AT_rich Low_complexity Low_complexity 32 52 0 3107 114 49 45 chr1 52458407 52458979 -190205374 - MER4B LTR ERV1 -36 574 1 2241 81 3 3 chr1 52459354 52459662 -190204691 + AluY SINE Alu 1 308 -3 249 83 0 0 chr1 52460675 52460711 -190203642 + (CA)n Simple_repeat Simple_repeat 1 36 0 550 218 136 0 chr1 52461014 52461161 -190203192 + MER96 DNA MER1_type? 1 167 -8 668 281 83 16 chr1 52461312 52461504 -190202849 - MIR SINE MIR -1 261 57 333 325 56 77 chr1 52461634 52462025 -190202328 + L2 LINE L2 2258 2640 -674 2075 117 3 0 chr1 52462238 52462538 -190201815 - AluSx SINE Alu -11 301 1 280 219 151 62 chr1 52462663 52462809 -190201544 + MIR SINE MIR 79 237 -25 180 226 194 11 chr1 52464460 52464553 -190199800 - L2 LINE L2 -5 3267 3158 353 344 45 72 chr1 52464708 52464929 -190199424 + L2 LINE L2 3057 3271 -1 287 294 22 0 chr1 52465026 52465118 -190199235 + MIR SINE MIR 168 261 -1 309 329 114 23 chr1 52465144 52465363 -190198990 - L2 LINE L2 -454 2860 2622 301 283 248 16 chr1 52465465 52465904 -190198449 + L2 LINE L2 2401 2941 -373 201 74 0 0 chr1 52466432 52466459 -190197894 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 193 277 141 4 chr1 52466811 52466916 -190197437 + MIR SINE MIR 4 122 -88 302 279 39 29 chr1 52467233 52467337 -190197016 - MIR3 SINE MIR -52 156 52 428 216 103 17 chr1 52467387 52467503 -190196850 - L2 LINE L2 -3 3310 3185 834 217 66 25 chr1 52468082 52468280 -190196073 - MER63A DNA MER1_type -3 207 2 203 314 105 0 chr1 52468462 52468548 -190195805 - MIR SINE MIR -32 230 136 1004 226 147 15 chr1 52468567 52468961 -190195392 + L1ME4a LINE L1 5610 6055 -66 252 260 0 14 chr1 52468983 52469056 -190195297 + L1ME3A LINE L1 6098 6169 -1 2276 98 0 0 chr1 52469103 52469409 -190194944 + AluSg SINE Alu 1 306 -4 21 57 0 0 chr1 52469526 52469561 -190194792 + AT_rich Low_complexity Low_complexity 1 35 0 229 197 79 40 chr1 52469614 52469690 -190194663 - MIR SINE MIR -115 147 69 328 337 113 61 chr1 52470652 52470981 -190193372 + L2 LINE L2 2925 3270 -2 242 210 148 12 chr1 52471017 52471098 -190193255 - MIR3 SINE MIR -13 195 104 2323 84 7 0 chr1 52471158 52471468 -190192885 + AluSp SINE Alu 1 312 -1 510 283 112 0 chr1 52471887 52472039 -190192314 - MIR SINE MIR -7 255 87 381 265 30 30 chr1 52472043 52472175 -190192178 - MIR3 SINE MIR -23 185 54 480 312 152 36 chr1 52473070 52473432 -190190921 + L2 LINE L2 2869 3272 0 230 236 18 0 chr1 52473580 52473635 -190190718 + (TG)n Simple_repeat Simple_repeat 1 56 0 267 348 135 6 chr1 52474053 52474231 -190190122 - MIR SINE MIR -12 250 50 250 295 40 47 chr1 52474430 52474579 -190189774 + L2 LINE L2 3104 3251 -62 1249 220 148 36 chr1 52474583 52475152 -190189201 - L2 LINE L2 -1 3312 2667 1502 137 149 15 chr1 52475159 52475421 -190188932 + AluJo SINE Alu 2 298 -4 199 355 109 45 chr1 52475589 52475809 -190188544 + L3 LINE CR1 1337 1570 -7 269 226 0 0 chr1 52476367 52476420 -190187933 - MIR SINE MIR -57 151 99 293 140 40 0 chr1 52476631 52476681 -190187672 + MLT1L LTR MaLR 1 52 -563 * 758 235 95 107 chr1 52476675 52476867 -190187486 + MLT1L LTR MaLR 168 361 -254 2271 109 3 0 chr1 52476867 52477178 -190187175 + AluSx SINE Alu 1 312 0 758 235 95 107 chr1 52477178 52477253 -190187100 + MLT1L LTR MaLR 361 435 -180 1214 248 102 60 chr1 52477253 52477822 -190186531 - MLT1G1 LTR MaLR 0 595 3 758 235 95 107 chr1 52477822 52477943 -190186410 + MLT1L LTR MaLR 435 554 -61 2318 74 0 0 chr1 52477943 52478240 -190186113 + AluY SINE Alu 1 297 -14 758 235 95 107 chr1 52478240 52478270 -190186083 + MLT1L LTR MaLR 554 583 -32 760 243 62 26 chr1 52478364 52478590 -190185763 + MIR SINE MIR 29 262 0 207 221 116 0 chr1 52478699 52478785 -190185568 + L3 LINE CR1 1434 1529 -48 570 231 9 0 chr1 52478971 52479079 -190185274 - MER81 DNA DNA 0 114 6 243 214 31 126 chr1 52479757 52479874 -190184479 + HAL1 LINE L1 65 165 -2342 1853 142 45 45 chr1 52479874 52480184 -190184169 + AluJb SINE Alu 1 310 -2 243 214 31 126 chr1 52480184 52480225 -190184128 + HAL1 LINE L1 165 208 -2299 1606 259 111 47 chr1 52480539 52480852 -190183501 + HAL1 LINE L1 799 1091 -1416 2423 98 0 0 chr1 52480852 52481149 -190183204 + AluSx SINE Alu 1 297 -15 1606 259 111 47 chr1 52481149 52481890 -190182463 + HAL1 LINE L1 1091 1920 -587 2443 87 0 0 chr1 52481969 52482267 -190182086 + AluSx SINE Alu 1 298 -14 1041 110 0 0 chr1 52482314 52482468 -190181885 + MER41A LTR ERV1 401 554 0 464 157 22 22 chr1 52482468 52482557 -190181796 + MER41A-int LTR ERV1 1 89 -5857 * 966 124 6 90 chr1 52482554 52482731 -190181622 + MER50-int LTR ERV1 5383 5544 -1661 1166 213 16 20 chr1 52482764 52483013 -190181340 + LTR8 LTR ERV1 338 585 -106 334 141 42 0 chr1 52483017 52483088 -190181265 + GA-rich Low_complexity Low_complexity 2 75 0 2012 119 39 36 chr1 52483423 52483472 -190180881 - L1MB3 LINE L1 0 6183 6136 2142 139 0 0 chr1 52483472 52483766 -190180587 - AluSx SINE Alu -18 294 1 2012 119 39 36 chr1 52483766 52484102 -190180251 - L1MB3 LINE L1 -47 6136 5797 1609 206 104 39 chr1 52484214 52484373 -190179980 - MLT1E2 LTR MaLR -2 624 477 2446 77 0 0 chr1 52484373 52484670 -190179683 + AluSx SINE Alu 1 297 -15 1609 206 104 39 chr1 52484670 52484970 -190179383 - MLT1E2 LTR MaLR -149 477 135 258 200 176 12 chr1 52484997 52485082 -190179271 - MLT1E2 LTR MaLR -555 99 1 1904 197 115 48 chr1 52485112 52485582 -190178771 + MLT1E2 LTR MaLR 53 565 -61 2161 112 7 10 chr1 52485582 52485885 -190178468 - AluSc SINE Alu -5 304 3 1904 197 115 48 chr1 52485885 52485952 -190178401 + MLT1E2 LTR MaLR 565 626 0 204 243 252 0 chr1 52486292 52486395 -190177958 + L3 LINE CR1 1376 1504 -73 1164 113 13 0 chr1 52486476 52486635 -190177718 - AluSg/x SINE Alu -15 297 137 373 263 233 9 chr1 52488562 52488794 -190175559 - L3 LINE CR1 -81 1496 1213 2151 131 3 3 chr1 52488794 52489092 -190175261 - AluSx SINE Alu -14 298 1 2774 118 45 2 chr1 52489366 52489832 -190174521 - L1PA16 LINE L1 -1 6165 5680 2262 69 7 0 chr1 52490005 52490305 -190174048 + AluSc SINE Alu 1 302 0 2072 132 11 0 chr1 52490307 52490611 -190173742 + AluSx SINE Alu 1 307 0 228 185 0 56 chr1 52490613 52490667 -190173686 + MER5B DNA MER1_type 83 133 -45 1344 138 145 60 chr1 52490812 52491094 -190173259 + AluJb SINE Alu 1 306 -6 334 304 0 0 chr1 52491109 52491201 -190173152 + MIR SINE MIR 24 115 -93 471 221 157 29 chr1 52491854 52492058 -190172295 - L2 LINE L2 -1 3312 3083 2215 107 21 0 chr1 52492124 52492414 -190171939 - AluSx SINE Alu -16 296 1 329 317 36 30 chr1 52492435 52492602 -190171751 + MIR SINE MIR 39 206 -56 252 149 0 0 chr1 52493362 52493409 -190170944 + (A)n Simple_repeat Simple_repeat 1 47 0 2312 85 0 3 chr1 52493757 52494060 -190170293 - AluSx SINE Alu 0 302 1 2564 35 0 0 chr1 52495432 52495720 -190168633 + AluY SINE Alu 1 288 -23 2322 92 20 0 chr1 52496141 52496433 -190167920 + AluSp SINE Alu 1 298 -15 394 281 54 70 chr1 52496443 52496628 -190167725 + L1M4 LINE L1 2837 3018 -3128 317 256 51 8 chr1 52496639 52496756 -190167597 - L2 LINE L2 -643 2671 2550 388 297 89 26 chr1 52497042 52497311 -190167042 + L1M4 LINE L1 3543 3828 -2318 471 229 45 15 chr1 52497338 52497485 -190166868 - MIR SINE MIR -68 140 13 228 253 202 10 chr1 52498069 52498168 -190166185 + MIR3 SINE MIR 6 123 -85 181 240 80 53 chr1 52498201 52498276 -190166077 - L2 LINE L2 -38 3234 3158 779 268 62 58 chr1 52499282 52499452 -190164901 - L1MC4a LINE L1 -1778 6030 5862 2260 117 7 0 chr1 52499452 52499761 -190164592 + AluSx SINE Alu 1 311 -1 779 268 62 58 chr1 52499761 52499990 -190164363 - L1MC4a LINE L1 -1946 5862 5629 257 213 0 0 chr1 52500786 52500833 -190163520 + MIR SINE MIR 4 50 -212 * 324 328 62 16 chr1 52500830 52500958 -190163395 - MIR SINE MIR -60 148 36 234 279 165 0 chr1 52501189 52501268 -190163085 - MIR SINE MIR -123 139 48 394 282 173 25 chr1 52501322 52501606 -190162747 - L3 LINE CR1 -98 1479 1154 618 205 60 70 chr1 52501607 52501792 -190162561 - MLT1J LTR MaLR 0 511 329 699 275 50 18 chr1 52501807 52502029 -190162324 - MLT1K LTR MaLR -26 562 334 270 309 25 0 chr1 52502788 52502869 -190161484 - L2 LINE L2 0 3272 3190 2344 107 0 19 chr1 52502895 52503076 -190161277 - AluSx SINE Alu 0 312 138 2287 109 0 0 chr1 52503076 52503378 -190160975 - AluSc SINE Alu -7 302 1 2344 107 0 19 chr1 52503378 52503514 -190160839 - AluSx SINE Alu -174 138 1 584 189 0 16 chr1 52503514 52503641 -190160712 - MIR SINE MIR -14 248 124 1944 132 0 74 chr1 52503694 52503901 -190160452 + MER1B DNA MER1_type 1 172 -2538 2107 119 0 7 chr1 52503901 52504212 -190160141 - AluSx SINE Alu 0 309 1 1944 132 0 74 chr1 52504212 52504367 -190159986 + MER1B DNA MER1_type 172 337 0 504 210 34 25 chr1 52505192 52505311 -190159042 + MIR SINE MIR 23 142 -66 255 289 107 16 chr1 52508053 52508174 -190156179 + MIR3 SINE MIR 10 141 -67 2244 96 10 16 chr1 52508469 52508783 -190155570 + AluSp SINE Alu 1 312 -1 259 336 19 19 chr1 52509354 52509461 -190154892 + MIR3 SINE MIR 51 157 -51 479 247 89 7 chr1 52509570 52509716 -190154637 - MIR SINE MIR -96 166 9 221 276 125 33 chr1 52509689 52509841 -190154512 - MIR SINE MIR -96 166 1 * 22 35 0 0 chr1 52510586 52510615 -190153738 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 52511466 52511487 -190152866 + GC_rich Low_complexity Low_complexity 1 21 0 59 59 0 0 chr1 52511598 52511699 -190152654 + GC_rich Low_complexity Low_complexity 1 101 0 22 0 0 0 chr1 52512071 52512093 -190152260 + GC_rich Low_complexity Low_complexity 1 22 0 222 242 16 40 chr1 52512174 52512298 -190152055 + (CCG)n Simple_repeat Simple_repeat 2 122 0 22 0 0 0 chr1 52512366 52512388 -190151965 + GC_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr1 52513314 52513337 -190151016 + (T)n Simple_repeat Simple_repeat 1 23 0 288 0 0 0 chr1 52515597 52515629 -190148724 + (TG)n Simple_repeat Simple_repeat 1 32 0 432 0 0 0 chr1 52515840 52515888 -190148465 + (TG)n Simple_repeat Simple_repeat 1 48 0 198 191 0 0 chr1 52516702 52516749 -190147604 + (CATTT)n Simple_repeat Simple_repeat 2 48 0 314 189 95 14 chr1 52519730 52519804 -190144549 - L2 LINE L2 -1 3312 3233 1367 141 12 0 chr1 52520965 52521206 -190143147 - L1MA5 LINE L1 -31 6269 6026 408 40 0 0 chr1 52521854 52521904 -190142449 + (TG)n Simple_repeat Simple_repeat 2 51 0 221 298 105 40 chr1 52522037 52522161 -190142192 + MIR3 SINE MIR 15 146 -62 459 271 56 0 chr1 52524127 52524271 -190140082 - L2 LINE L2 -4 3309 3158 183 156 0 0 chr1 52524698 52524730 -190139623 + CT-rich Low_complexity Low_complexity 1 32 0 1571 158 27 8 chr1 52524973 52525233 -190139120 - AluJo SINE Alu -9 303 39 234 286 0 61 chr1 52526373 52526471 -190137882 - L2 LINE L2 -213 3059 2968 388 274 12 83 chr1 52526599 52526767 -190137586 - MLT1J2 LTR MaLR -31 419 264 464 224 39 26 chr1 52526797 52526953 -190137400 - Charlie4 DNA MER1_type -15 1946 1789 2458 106 0 0 chr1 52526954 52527266 -190137087 + AluSx SINE Alu 1 312 0 248 151 14 123 chr1 52527740 52527813 -190136540 + L2 LINE L2 3249 3313 0 2340 91 0 10 chr1 52527907 52528205 -190136148 - AluY SINE Alu -16 295 1 1005 107 2 59 chr1 52528252 52528481 -190135872 + L1MA6 LINE L1 5556 5796 -367 2087 117 14 0 chr1 52528481 52528762 -190135591 + AluSx SINE Alu 1 285 -27 402 21 0 0 chr1 52528762 52528809 -190135544 + (CA)n Simple_repeat Simple_repeat 2 48 0 1005 107 2 59 chr1 52528809 52529011 -190135342 + L1MA6 LINE L1 5794 5961 -202 1868 158 3 20 chr1 52529117 52529415 -190134938 - AluJb SINE Alu -19 293 1 226 284 62 12 chr1 52529462 52529543 -190134810 - MIR SINE MIR -50 212 128 2403 51 0 0 chr1 52529818 52530112 -190134241 - AluY SINE Alu -17 294 1 2014 85 0 25 chr1 52530564 52530847 -190133506 - AluSx SINE Alu -14 298 23 379 274 73 50 chr1 52532042 52532215 -190132138 + MIR SINE MIR 15 187 -69 260 217 67 0 chr1 52532286 52532346 -190132007 + MIR SINE MIR 194 257 -5 518 247 141 27 chr1 52532761 52533004 -190131349 - MIR SINE MIR 0 262 2 1495 178 7 4 chr1 52533211 52533481 -190130872 + AluJo SINE Alu 1 271 -41 272 330 0 9 chr1 52533495 52533601 -190130752 - L1MC4 LINE L1 -10 8032 7928 232 266 177 13 chr1 52535678 52535757 -190128596 + L2 LINE L2 3168 3259 -13 363 290 42 31 chr1 52535761 52535954 -190128399 - L2 LINE L2 -252 3020 2826 654 306 85 0 chr1 52536566 52536765 -190127588 + MIR SINE MIR 33 248 -14 194 0 0 37 chr1 52536767 52536794 -190127559 + (TTA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr1 52536853 52536876 -190127477 + AT_rich Low_complexity Low_complexity 1 23 0 2407 40 7 7 chr1 52537058 52537356 -190126997 - AluY SINE Alu -13 298 1 393 272 81 29 chr1 52537562 52537698 -190126655 + MIR SINE MIR 11 153 -109 265 303 128 0 chr1 52537974 52538083 -190126270 - MIR SINE MIR -62 200 78 2257 97 0 0 chr1 52538893 52539193 -190125160 + AluSq SINE Alu 1 300 -13 186 222 0 0 chr1 52539444 52539498 -190124855 + CT-rich Low_complexity Low_complexity 1 54 0 369 0 0 0 chr1 52539597 52539638 -190124715 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr1 52539828 52539850 -190124503 + AT_rich Low_complexity Low_complexity 1 22 0 251 280 79 147 chr1 52539882 52540310 -190124043 + L2 LINE L2 2842 3240 -32 285 142 52 15 chr1 52540314 52540448 -190123905 + (TCTA)n Simple_repeat Simple_repeat 3 141 0 23 0 0 0 chr1 52540468 52540491 -190123862 + AT_rich Low_complexity Low_complexity 1 23 0 800 177 0 0 chr1 52540491 52540621 -190123732 - FLAM_C SINE Alu -2 131 2 548 53 13 0 chr1 52540621 52540697 -190123656 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 424 322 189 17 chr1 52542128 52542429 -190121924 - L2 LINE L2 -1 3271 2919 2087 103 0 7 chr1 52543003 52543305 -190121048 + AluSg SINE Alu 1 300 -10 185 0 40 0 chr1 52543313 52543338 -190121015 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 215 288 136 64 chr1 52544072 52544197 -190120156 - MIR3 SINE MIR -62 146 13 303 71 0 0 chr1 52545122 52545164 -190119189 + (TG)n Simple_repeat Simple_repeat 2 43 0 1013 207 138 0 chr1 52545215 52545432 -190118921 + MIR SINE MIR 16 262 0 569 240 99 14 chr1 52545556 52545733 -190118620 + MIR SINE MIR 3 191 -62 3350 143 49 54 chr1 52545839 52546510 -190117843 + L1MA9 LINE L1 5620 6287 -25 423 191 11 34 chr1 52546685 52546774 -190117579 - MIR SINE MIR -78 184 98 971 212 30 56 chr1 52547287 52547555 -190116798 + MIR SINE MIR 6 262 0 307 277 181 53 chr1 52547546 52548042 -190116311 + L2 LINE L2 2691 3266 -6 * 485 265 165 48 chr1 52548147 52548377 -190115976 + MIR SINE MIR 2 258 -4 1846 153 0 0 chr1 52548531 52548825 -190115528 + AluJb SINE Alu 1 294 -18 264 59 0 0 chr1 52549033 52549067 -190115286 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 274 300 157 50 chr1 52549067 52549207 -190115146 - L2 LINE L2 -17 3255 3101 238 103 0 132 chr1 52549314 52549382 -190114971 + LTR66 LTR ERVL 381 439 -171 518 218 20 68 chr1 52549417 52549487 -190114866 - MIR SINE MIR -55 207 146 2763 147 69 11 chr1 52549487 52549964 -190114389 - MLT1D LTR MaLR 0 505 1 518 218 20 68 chr1 52549964 52550040 -190114313 - MIR SINE MIR -116 146 68 571 230 84 52 chr1 52550973 52551186 -190113167 + L2 LINE L2 2476 2695 -619 587 257 78 81 chr1 52551278 52551380 -190112973 + L2 LINE L2 2920 3021 -292 2314 63 0 17 chr1 52551380 52551680 -190112673 + AluY SINE Alu 1 295 -16 587 257 78 81 chr1 52551680 52551923 -190112430 + L2 LINE L2 3021 3264 -49 249 216 0 0 chr1 52552398 52552486 -190111867 + CT-rich Low_complexity Low_complexity 1 88 0 1179 231 135 41 chr1 52552760 52553293 -190111060 - L1MC4 LINE L1 -1 8041 7459 1981 106 35 0 chr1 52553764 52554047 -190110306 + AluSg SINE Alu 1 293 -17 590 258 129 19 chr1 52554150 52554359 -190109994 + MIR SINE MIR 7 238 -24 226 299 62 21 chr1 52554764 52554861 -190109492 + MIR SINE MIR 43 143 -65 637 275 78 86 chr1 52554884 52555244 -190109109 - L2 LINE L2 0 3272 2916 216 324 17 28 chr1 52556673 52556849 -190107504 + (CAACT)n Simple_repeat Simple_repeat 4 177 0 226 322 11 0 chr1 52556906 52556993 -190107360 + (CAACT)n Simple_repeat Simple_repeat 5 92 0 * 308 393 6 0 chr1 52556951 52557152 -190107201 + (CAGCT)n Simple_repeat Simple_repeat 1 202 0 439 289 58 0 chr1 52557161 52557282 -190107071 + L2 LINE L2 3182 3309 -4 984 222 78 87 chr1 52557403 52557536 -190106817 - L2 LINE L2 -18 3295 3162 195 100 0 0 chr1 52557536 52557566 -190106787 + (TG)n Simple_repeat Simple_repeat 1 30 0 984 222 78 87 chr1 52557566 52557681 -190106672 - L2 LINE L2 -151 3162 3047 1477 157 4 8 chr1 52557681 52557936 -190106417 + AluJb SINE Alu 1 254 -58 984 222 78 87 chr1 52557936 52557958 -190106395 - L2 LINE L2 -266 3047 3026 1676 161 46 20 chr1 52557958 52558262 -190106091 + AluJo SINE Alu 1 312 0 984 222 78 87 chr1 52558262 52558426 -190105927 - L2 LINE L2 -287 3026 2863 453 261 67 0 chr1 52558451 52558570 -190105783 + L2 LINE L2 3141 3267 -5 229 293 16 73 chr1 52558722 52558845 -190105508 + MIR SINE MIR 96 211 -51 184 328 0 15 chr1 52558904 52558971 -190105382 + MIR3 SINE MIR 143 208 0 191 337 16 73 chr1 52559006 52559252 -190105101 + L2 LINE L2 2733 2964 -350 392 295 107 43 chr1 52559400 52559634 -190104719 - L1MC4a LINE L1 -1726 6082 5834 493 244 91 23 chr1 52559870 52560046 -190104307 - L1M3 LINE L1 -642 5541 5354 462 289 31 86 chr1 52560071 52560362 -190103991 + L2 LINE L2 2996 3270 -2 518 212 172 13 chr1 52561618 52561769 -190102584 - MER5A DNA MER1_type -2 187 13 220 345 0 0 chr1 52561896 52561954 -190102399 - L2 LINE L2 -1 3312 3255 213 272 0 37 chr1 52562165 52562246 -190102107 - L2 LINE L2 -62 3210 3133 397 271 8 49 chr1 52562281 52562403 -190101950 + L2 LINE L2 3197 3313 0 201 321 9 28 chr1 52562492 52562598 -190101755 - L2 LINE L2 -218 3054 2951 285 259 130 23 chr1 52563083 52563214 -190101139 - MIR SINE MIR -63 145 3 1056 263 55 53 chr1 52563233 52563613 -190100740 - L2 LINE L2 -12 3301 2921 789 311 106 78 chr1 52564212 52565361 -190098992 + L2 LINE L2 2126 3313 0 296 307 61 31 chr1 52565403 52565631 -190098722 + L2 LINE L2 2877 3111 -161 278 182 212 0 chr1 52565997 52566063 -190098290 - MER116 DNA Mariner 0 80 1 262 365 28 0 chr1 52566063 52566170 -190098183 + MIR SINE MIR 82 191 -71 961 282 167 24 chr1 52566245 52566664 -190097689 - LTR67 LTR ERVL -8 549 71 640 232 125 0 chr1 52566710 52566878 -190097475 + MIR SINE MIR 74 262 0 268 241 0 0 chr1 52566911 52566965 -190097388 + L2 LINE L2 3214 3267 -5 535 242 96 45 chr1 52567034 52567232 -190097121 - MER63A DNA MER1_type 0 210 3 270 246 16 0 chr1 52568067 52568128 -190096225 - L2 LINE L2 -9 3263 3202 848 195 0 6 chr1 52568498 52568662 -190095691 - FRAM SINE Alu -13 163 1 2875 160 124 108 chr1 52568674 52568886 -190095467 - L1ME2 LINE L1 0 6164 5957 2184 101 0 0 chr1 52568886 52569184 -190095169 - AluSx SINE Alu -14 298 1 2875 160 124 108 chr1 52569184 52569611 -190094742 - L1ME2 LINE L1 -207 5957 5492 1508 185 13 45 chr1 52569611 52569924 -190094429 - AluJo SINE Alu -9 303 1 2875 160 124 108 chr1 52569924 52570271 -190094082 - L1ME2 LINE L1 -672 5492 5152 1637 218 65 14 chr1 52570770 52571216 -190093137 - L1ME2 LINE L1 -956 5190 4722 * 2845 252 82 20 chr1 52571214 52571483 -190092870 - L1ME2 LINE L1 -2062 4084 3833 492 72 0 0 chr1 52571483 52571552 -190092801 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2845 252 82 20 chr1 52571552 52572364 -190091989 - L1ME2 LINE L1 -2313 3833 2936 219 325 25 94 chr1 52572366 52572569 -190091784 + L2 LINE L2 2990 3178 -135 430 187 216 30 chr1 52572671 52572805 -190091548 + L2 LINE L2 3155 3313 0 480 237 200 0 chr1 52572943 52573078 -190091275 + L2 LINE L2 3111 3272 0 346 283 98 9 chr1 52573262 52573442 -190090911 - MIR SINE MIR -50 212 10 811 161 7 0 chr1 52573646 52573829 -190090524 - AluJb SINE Alu 0 330 147 423 289 60 7 chr1 52573833 52573982 -190090371 + MIR SINE MIR 49 205 -57 340 254 67 67 chr1 52574522 52574715 -190089638 + L2 LINE L2 2831 3023 -290 862 133 31 71 chr1 52574814 52574845 -190089508 + MER53 DNA DNA 2 33 -156 194 0 0 37 chr1 52574845 52574872 -190089481 + (TAA)n Simple_repeat Simple_repeat 2 27 0 862 133 31 71 chr1 52574872 52575036 -190089317 + MER53 DNA DNA 33 189 0 380 267 130 19 chr1 52575134 52575295 -190089058 - MIR3 SINE MIR -24 184 6 573 249 190 57 chr1 52576042 52576513 -190087840 - L2 LINE L2 -963 2351 1788 2152 119 3 0 chr1 52576513 52576815 -190087538 - AluSq SINE Alu -10 303 1 573 249 190 57 chr1 52576815 52576921 -190087432 - L2 LINE L2 -1526 1788 1697 3648 15 0 0 chr1 52577058 52577469 -190086884 - L1PA4 LINE L1 -8 6147 5737 666 258 16 66 chr1 52577545 52577710 -190086643 + MER112 DNA MER1_type 7 156 -104 1870 145 0 7 chr1 52577710 52578000 -190086353 - AluJo SINE Alu -20 292 5 666 258 16 66 chr1 52578000 52578090 -190086263 + MER112 DNA MER1_type 156 249 -11 303 321 164 16 chr1 52578150 52578461 -190085892 - L2 LINE L2 -1747 1567 1211 520 228 49 8 chr1 52578603 52578726 -190085627 - L2 LINE L2 0 3313 3186 202 355 25 41 chr1 52578898 52579019 -190085334 - MIR3 SINE MIR -89 119 1 254 351 0 0 chr1 52579426 52579520 -190084833 + (CA)n Simple_repeat Simple_repeat 1 94 0 219 250 96 29 chr1 52579690 52579794 -190084559 + L2 LINE L2 2877 2987 -285 204 237 0 0 chr1 52579953 52579991 -190084362 - MIR SINE MIR -3 259 222 221 189 38 88 chr1 52580023 52580131 -190084222 - MIR SINE MIR -107 155 18 28 0 0 0 chr1 52580590 52580618 -190083735 + GC_rich Low_complexity Low_complexity 1 28 0 31 68 0 0 chr1 52580905 52580964 -190083389 + GC_rich Low_complexity Low_complexity 1 59 0 349 283 126 37 chr1 52581978 52582169 -190082184 + MIR SINE MIR 26 233 -29 655 256 78 0 chr1 52583609 52583789 -190080564 - MIR SINE MIR -12 250 57 381 312 93 19 chr1 52584162 52584431 -190079922 - L3 LINE CR1 -156 1421 1133 288 217 29 17 chr1 52584432 52584607 -190079746 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 253 257 18 0 chr1 52584582 52584691 -190079662 + (TTCA)n Simple_repeat Simple_repeat 3 113 0 * 586 271 182 0 chr1 52585040 52585287 -190079066 - L2 LINE L2 0 3313 3022 187 333 53 35 chr1 52585530 52585644 -190078709 - MIR SINE MIR -112 150 35 909 134 25 13 chr1 52586006 52586163 -190078190 + MSTB2 LTR MaLR 1 159 -298 1156 216 232 35 chr1 52586165 52586618 -190077735 - MLT1E LTR MaLR -112 481 1 240 235 15 44 chr1 52586660 52586728 -190077625 + MLT1H1 LTR MaLR 202 267 -288 604 225 130 0 chr1 52586762 52586931 -190077422 + MLT1H1 LTR MaLR 258 448 -107 343 214 51 60 chr1 52587156 52587273 -190077080 + MIR3 SINE MIR 2 117 -91 * 869 222 6 0 chr1 52587272 52587439 -190076914 - MIR SINE MIR -22 240 73 205 277 0 75 chr1 52588221 52588315 -190076038 - MIR3 SINE MIR -15 193 107 364 267 37 44 chr1 52588421 52588556 -190075797 + L2 LINE L2 2926 3059 -213 1648 100 90 21 chr1 52588651 52588941 -190075412 + THE1C LTR MaLR 1 310 -65 2235 122 0 0 chr1 52588941 52589237 -190075116 - AluSx SINE Alu -16 296 1 182 179 205 0 chr1 52589701 52589740 -190074613 - L3 LINE CR1 -106 1471 1425 341 368 71 0 chr1 52590007 52590162 -190074191 + MIR SINE MIR 19 184 -78 181 315 92 31 chr1 52590251 52590381 -190073972 + L2 LINE L2 2180 2317 -997 233 329 51 37 chr1 52590454 52590670 -190073683 + L2 LINE L2 2817 3035 -237 2095 161 33 35 chr1 52590681 52591047 -190073306 + MLT1A1 LTR MaLR 1 365 0 207 177 76 127 chr1 52591118 52591189 -190073164 - L2 LINE L2 0 3313 3247 595 329 20 20 chr1 52591189 52591438 -190072915 + MIR SINE MIR 4 252 -10 2100 128 6 10 chr1 52591612 52591925 -190072428 + AluSx SINE Alu 1 312 0 315 154 26 51 chr1 52591930 52592008 -190072345 + L1ME2 LINE L1 5944 6019 -145 224 234 156 13 chr1 52592076 52592153 -190072200 + L2 LINE L2 3100 3187 -85 221 366 40 0 chr1 52592297 52592398 -190071955 + MIR SINE MIR 86 190 -72 425 311 24 2 chr1 52592984 52593150 -190071203 - MIR3 SINE MIR -64 144 15 567 284 93 23 chr1 52593558 52593773 -190070580 + MIR SINE MIR 17 246 -16 405 209 136 0 chr1 52594803 52594913 -190069440 - MIR SINE MIR -57 151 27 1788 171 13 69 chr1 52595066 52595458 -190068895 - MLT1A2 LTR MaLR -4 370 1 537 241 0 70 chr1 52595632 52595691 -190068662 - LTR33 LTR ERVL -4 517 455 1454 159 8 4 chr1 52595691 52595943 -190068410 - L1MB3 LINE L1 0 6183 5931 537 241 0 70 chr1 52595943 52596070 -190068283 - LTR33 LTR ERVL -66 455 344 231 259 37 0 chr1 52596198 52596279 -190068074 - LTR33 LTR ERVL -427 94 11 1770 193 3 0 chr1 52596668 52596973 -190067380 - AluJb SINE Alu -1 311 6 500 297 62 26 chr1 52597388 52597580 -190066773 - MIR SINE MIR -32 230 32 318 333 39 58 chr1 52597595 52597751 -190066602 + L3 LINE CR1 1420 1572 -5 192 356 20 40 chr1 52598036 52598137 -190066216 + MIR SINE MIR 17 115 -93 774 240 88 64 chr1 52598631 52598769 -190065584 - MLT1H LTR MaLR 0 549 416 1851 201 92 72 chr1 52598769 52599300 -190065053 + MLT1F LTR MaLR 1 542 0 774 240 88 64 chr1 52599300 52599501 -190064852 - MLT1H LTR MaLR -133 416 221 1569 85 28 24 chr1 52599501 52599748 -190064605 - L1PB2 LINE L1 0 6151 5904 774 240 88 64 chr1 52599748 52599885 -190064468 - MLT1H LTR MaLR -328 221 17 206 261 209 30 chr1 52599996 52600130 -190064223 - MIR SINE MIR -5 257 100 280 195 0 24 chr1 52600482 52600564 -190063789 + GA-rich Low_complexity Low_complexity 5 84 0 264 329 20 7 chr1 52600641 52600793 -190063560 + GA-rich Low_complexity Low_complexity 2 155 0 435 258 174 6 chr1 52600837 52601004 -190063349 + MIR SINE MIR 68 262 0 201 74 0 0 chr1 52601012 52601039 -190063314 + (TTA)n Simple_repeat Simple_repeat 3 29 0 643 305 74 26 chr1 52601352 52601742 -190062611 - HsTC2 DNA Tc2 -1008 890 482 1132 164 161 33 chr1 52602458 52602762 -190061591 + MER2 DNA MER2_type 2 344 0 322 333 96 32 chr1 52602954 52603110 -190061243 - MIR SINE MIR 0 262 97 182 239 22 0 chr1 52603084 52603130 -190061223 + MIR SINE MIR 168 214 -48 * 943 116 0 0 chr1 52603133 52603254 -190061099 + AluJb SINE Alu 2 122 -190 288 0 0 0 chr1 52603255 52603287 -190061066 + (CAA)n Simple_repeat Simple_repeat 2 33 0 191 237 0 0 chr1 52603297 52603335 -190061018 + L2 LINE L2 3213 3250 -22 311 294 16 80 chr1 52603370 52603457 -190060896 - L2 LINE L2 -109 3163 3093 2213 126 3 0 chr1 52603457 52603759 -190060594 + AluSx SINE Alu 1 303 -9 311 294 16 80 chr1 52603759 52603858 -190060495 - L2 LINE L2 -179 3093 2989 449 260 74 60 chr1 52603862 52604270 -190060083 + MLT1J LTR MaLR 18 479 -32 341 181 0 48 chr1 52604421 52604504 -190059849 + MIR SINE MIR 172 250 -12 200 118 373 0 chr1 52604523 52604574 -190059779 + MIR SINE MIR 81 150 -112 250 354 128 35 chr1 52604882 52605139 -190059214 + L2 LINE L2 2990 3270 -2 215 359 22 0 chr1 52605350 52605442 -190058911 + MIR SINE MIR 34 127 -81 184 167 9 61 chr1 52605590 52605704 -190058649 + CT-rich Low_complexity Low_complexity 2 109 0 187 177 10 52 chr1 52606087 52606183 -190058170 + G-rich Low_complexity Low_complexity 2 93 0 234 291 112 8 chr1 52606485 52606619 -190057734 - MIR SINE MIR -71 191 44 345 312 142 10 chr1 52607184 52607389 -190056964 + L2 LINE L2 2817 3048 -224 300 193 35 0 chr1 52607432 52607489 -190056864 + MIR3 SINE MIR 109 167 -41 233 320 13 27 chr1 52607651 52607726 -190056627 - MIR SINE MIR -109 99 26 315 341 24 0 chr1 52608071 52608194 -190056159 + L2 LINE L2 2920 3045 -227 379 279 157 7 chr1 52608525 52608672 -190055681 - MIR SINE MIR -62 200 32 2251 80 3 7 chr1 52608682 52608971 -190055382 + AluSc SINE Alu 1 288 -21 355 218 0 46 chr1 52610686 52610773 -190053580 + MIR SINE MIR 75 157 -105 3851 78 33 0 chr1 52611034 52611550 -190052803 + L1PA10 LINE L1 5635 6167 -1 407 256 70 23 chr1 52611653 52611782 -190052571 + L2 LINE L2 3137 3271 -1 762 212 13 13 chr1 52611783 52611934 -190052419 + MIR SINE MIR 86 236 -26 293 290 121 10 chr1 52611935 52612063 -190052290 - MIR SINE MIR -57 151 11 659 271 106 0 chr1 52612082 52612270 -190052083 + MLT1J LTR MaLR 18 225 -286 873 100 0 0 chr1 52612281 52612391 -190051962 - AluSg/x SINE Alu -36 274 165 409 241 190 36 chr1 52612429 52612624 -190051729 + MLT1J LTR MaLR 287 511 0 314 289 67 0 chr1 52612703 52612807 -190051546 + L2 LINE L2 3172 3282 -31 1532 254 134 24 chr1 52612808 52613342 -190051011 + MLT2F LTR ERVL 3 608 -55 1581 198 13 3 chr1 52613342 52613645 -190050708 - AluJb SINE Alu -2 310 5 1532 254 134 24 chr1 52613645 52613692 -190050661 + MLT2F LTR ERVL 608 648 -15 2072 150 39 28 chr1 52614006 52614366 -190049987 + THE1B LTR MaLR 1 364 0 12365 81 15 0 chr1 52614366 52615923 -190048430 + THE1B-int LTR MaLR 1 1580 0 2180 141 36 30 chr1 52615923 52616285 -190048068 + THE1B LTR MaLR 1 364 0 233 348 0 22 chr1 52616447 52616539 -190047814 + L2 LINE L2 2731 2820 -494 2409 107 0 0 chr1 52616642 52616952 -190047401 - AluSx SINE Alu -2 310 1 183 222 0 0 chr1 52617092 52617137 -190047216 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 586 304 96 63 chr1 52617169 52617567 -190046786 - L2 LINE L2 -32 3240 2830 359 252 128 24 chr1 52617773 52617941 -190046412 + MIR3 SINE MIR 4 186 -76 359 260 31 170 chr1 52618575 52618798 -190045555 + MER91A DNA MER1_type 4 195 -1 362 285 118 28 chr1 52619790 52619934 -190044419 + MIR3 SINE MIR 31 187 -21 335 333 0 10 chr1 52620022 52620118 -190044235 + L2 LINE L2 2960 3054 -218 180 236 127 0 chr1 52620419 52620474 -190043879 + L2 LINE L2 3204 3265 -7 311 208 0 21 chr1 52621461 52621557 -190042796 + CT-rich Low_complexity Low_complexity 3 96 0 238 269 56 22 chr1 52621786 52621943 -190042410 - MIR SINE MIR -16 246 33 196 363 104 37 chr1 52621944 52622079 -190042274 + MIR3 SINE MIR 56 199 -9 213 211 19 0 chr1 52622447 52622507 -190041846 + L2 LINE L2 2798 2857 -415 327 252 29 29 chr1 52622553 52622656 -190041697 - MLT1J2 LTR MaLR -1 449 347 2056 136 7 16 chr1 52622820 52623129 -190041224 - AluJb SINE Alu -6 306 1 588 223 91 114 chr1 52623768 52624109 -190040244 - MLT1J2 LTR MaLR -117 333 1 237 206 99 154 chr1 52624162 52624310 -190040043 - MIR SINE MIR -70 138 16 605 271 188 3 chr1 52624820 52625156 -190039197 + LTR33 LTR ERVL 12 409 -112 204 40 0 0 chr1 52625202 52625227 -190039126 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 2052 143 36 0 chr1 52625230 52625531 -190038822 - AluSx SINE Alu 0 312 1 999 298 70 36 chr1 52625582 52625968 -190038385 + L2 LINE L2 2915 3313 0 243 267 11 22 chr1 52626001 52626091 -190038262 + (TGAA)n Simple_repeat Simple_repeat 4 92 0 1608 163 7 0 chr1 52626097 52626374 -190037979 + MLT1C LTR MaLR 187 465 -2 350 174 340 14 chr1 52626449 52626593 -190037760 + MIR3 SINE MIR 5 195 -13 188 263 0 0 chr1 52627241 52627279 -190037074 + L3 LINE CR1 588 625 -952 229 305 164 6 chr1 52627395 52627572 -190036781 + L3 LINE CR1 843 1047 -530 223 258 92 129 chr1 52627650 52627921 -190036432 - L3 LINE CR1 -174 1403 1143 411 258 0 0 chr1 52628324 52628417 -190035936 + MIR3 SINE MIR 98 190 -18 654 266 33 28 chr1 52630532 52630746 -190033607 - MIR SINE MIR 0 262 48 1865 142 44 0 chr1 52632061 52632356 -190031997 - AluSx SINE Alu 0 312 5 382 308 182 0 chr1 52632393 52632536 -190031817 - MIR SINE MIR -48 214 46 239 160 100 0 chr1 52633014 52633064 -190031289 - MER117 DNA MER1_type -136 61 7 216 374 10 10 chr1 52633079 52633178 -190031175 - MIR SINE MIR -115 147 49 361 265 93 62 chr1 52633387 52633549 -190030804 + MIR3 SINE MIR 40 206 -2 530 318 91 47 chr1 52633780 52634189 -190030164 - L2 LINE L2 0 3272 2846 563 311 25 42 chr1 52634799 52635040 -190029313 - MIR SINE MIR -20 242 6 183 235 50 59 chr1 52635397 52635516 -190028837 + L2 LINE L2 3153 3270 -43 554 239 149 93 chr1 52635895 52636163 -190028190 - MLT1I LTR MaLR -18 391 109 361 315 19 37 chr1 52636472 52636634 -190027719 + L2 LINE L2 2954 3112 -160 860 192 42 26 chr1 52636693 52636886 -190027467 - MER63A DNA MER1_type 0 210 15 1835 165 58 15 chr1 52637698 52638025 -190026328 - MER58B DNA MER1_type 0 341 1 290 280 182 15 chr1 52638633 52638765 -190025588 - MIR3 SINE MIR -21 187 34 502 273 11 96 chr1 52639088 52639275 -190025078 - MER91A DNA MER1_type -20 176 6 228 331 39 17 chr1 52639499 52639680 -190024673 + L2 LINE L2 1320 1504 -1810 288 311 40 54 chr1 52640184 52640332 -190024021 - MIR3 SINE MIR -17 191 46 237 65 0 0 chr1 52640628 52640659 -190023694 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 0 0 0 chr1 52641421 52641444 -190022909 + (TG)n Simple_repeat Simple_repeat 1 23 0 284 215 23 23 chr1 52641462 52641769 -190022584 + (TG)n Simple_repeat Simple_repeat 1 307 0 418 231 30 24 chr1 52641782 52641951 -190022402 + (TG)n Simple_repeat Simple_repeat 2 171 0 241 126 23 35 chr1 52642000 52642087 -190022266 + (TG)n Simple_repeat Simple_repeat 1 86 0 458 216 35 12 chr1 52642103 52642274 -190022079 + (TG)n Simple_repeat Simple_repeat 1 175 0 226 291 163 0 chr1 52642763 52642849 -190021504 + MIR SINE MIR 19 118 -90 239 234 0 0 chr1 52643149 52643196 -190021157 - MER91 DNA MER1_type 0 190 144 348 24 0 0 chr1 52644682 52644723 -190019630 + (CAT)n Simple_repeat Simple_repeat 1 41 0 456 306 84 89 chr1 52644822 52645237 -190019116 + L2 LINE L2 2860 3272 0 382 288 68 0 chr1 52645304 52645422 -190018931 - MIR SINE MIR -64 198 73 297 310 84 42 chr1 52645808 52645950 -190018403 - MIR SINE MIR -60 202 55 200 401 25 25 chr1 52645988 52646145 -190018208 + MIR3 SINE MIR 25 181 -27 316 309 27 9 chr1 52646499 52646609 -190017744 - L3 LINE CR1 -83 1494 1383 209 237 31 62 chr1 52646870 52646967 -190017386 - MIR SINE MIR -86 122 29 180 297 187 11 chr1 52647980 52648071 -190016282 + L2 LINE L2 3160 3266 -6 202 299 23 46 chr1 52648085 52648172 -190016181 + MIR3 SINE MIR 12 96 -112 299 308 27 48 chr1 52648487 52648633 -190015720 - MIR3 SINE MIR -14 194 52 303 292 21 10 chr1 52648889 52648985 -190015368 - MIR SINE MIR 0 262 166 291 270 16 54 chr1 52649603 52649788 -190014565 + (CAACT)n Simple_repeat Simple_repeat 3 180 0 194 298 96 0 chr1 52649790 52649884 -190014469 - L2 LINE L2 -307 2965 2863 237 263 74 42 chr1 52650283 52650378 -190013975 + MIR SINE MIR 39 136 -126 428 288 131 25 chr1 52650567 52650765 -190013588 + MIR SINE MIR 42 260 -2 180 200 0 0 chr1 52652198 52652233 -190012120 - L3 LINE CR1 -941 636 602 * 653 320 32 26 chr1 52652202 52652546 -190011807 - L2 LINE L2 -1164 2150 1805 512 238 214 24 chr1 52652845 52653055 -190011298 + MIR SINE MIR 12 261 -1 255 308 169 8 chr1 52653095 52653225 -190011128 + MIR SINE MIR 32 182 -80 424 319 53 5 chr1 52653260 52653448 -190010905 - MIR SINE MIR -55 207 11 230 250 150 0 chr1 52653841 52653921 -190010432 - L2 LINE L2 -38 3234 3143 791 258 100 0 chr1 52654247 52654437 -190009916 + MIR SINE MIR 2 210 -52 1796 173 33 21 chr1 52654449 52654784 -190009569 + MER44D DNA MER2_type 1 609 0 278 309 71 48 chr1 52654820 52654988 -190009365 + MIR SINE MIR 38 209 -53 281 343 0 0 chr1 52655178 52655251 -190009102 + LTR67 LTR ERVL 152 224 -333 276 267 6 12 chr1 52655420 52655592 -190008761 + CT-rich Low_complexity Low_complexity 1 171 0 379 106 30 15 chr1 52655592 52655658 -190008695 + LTR67 LTR ERVL 491 557 0 322 357 14 28 chr1 52655722 52655865 -190008488 - MIR3 SINE MIR -19 189 49 436 210 10 0 chr1 52656244 52656344 -190008009 + MIR SINE MIR 45 145 -63 340 300 106 66 chr1 52656502 52656805 -190007548 + L3 LINE CR1 1190 1504 -73 374 283 20 10 chr1 52657195 52657294 -190007059 - L2 LINE L2 -6 3307 3208 530 248 65 29 chr1 52657388 52657704 -190006649 - MLT1I LTR MaLR 0 409 73 787 257 24 5 chr1 52657717 52657923 -190006430 - MIR SINE MIR -51 211 2 429 301 30 84 chr1 52658979 52659045 -190005308 - MIR SINE MIR -35 227 159 2272 85 0 19 chr1 52659045 52659361 -190004992 + AluSg SINE Alu 1 310 0 429 301 30 84 chr1 52659361 52659497 -190004856 - MIR SINE MIR -103 159 36 408 284 11 0 chr1 52660205 52660300 -190004053 - L2 LINE L2 -25 3247 3152 213 352 45 0 chr1 52660337 52660425 -190003928 + L2 LINE L2 3217 3308 -5 34 24 0 0 chr1 52660452 52660493 -190003860 + AT_rich Low_complexity Low_complexity 1 41 0 485 282 49 22 chr1 52661083 52661276 -190003077 - MIR SINE MIR -50 212 17 1749 160 3 10 chr1 52661339 52661639 -190002714 - AluJb SINE Alu -14 298 1 318 306 156 20 chr1 52661684 52661883 -190002470 - MIR SINE MIR -16 246 21 354 340 120 7 chr1 52661939 52662089 -190002264 - L2 LINE L2 -2 3270 3104 268 298 60 56 chr1 52662270 52662485 -190001868 + L2 LINE L2 2826 3041 -231 185 316 0 0 chr1 52662497 52662554 -190001799 + L3 LINE CR1 1421 1477 -100 276 289 13 0 chr1 52662563 52662639 -190001714 + MIR SINE MIR 94 170 -92 198 253 80 0 chr1 52662658 52662733 -190001620 - L2 LINE L2 -160 3112 3032 907 264 60 4 chr1 52662764 52662999 -190001354 - MIR SINE MIR -2 260 13 338 129 16 0 chr1 52663387 52663449 -190000904 + CT-rich Low_complexity Low_complexity 4 66 0 347 286 22 11 chr1 52663542 52663633 -190000720 + MIR3 SINE MIR 15 106 -102 717 188 0 0 chr1 52663735 52663879 -190000474 + (TCCA)n Simple_repeat Simple_repeat 4 147 0 191 146 24 0 chr1 52663941 52663982 -190000371 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 183 321 92 18 chr1 52664166 52664275 -190000078 + L2 LINE L2 3153 3269 -3 231 333 39 0 chr1 52664448 52664526 -189999827 - MIR SINE MIR -86 122 42 203 59 0 29 chr1 52665018 52665052 -189999301 + (TCCC)n Simple_repeat Simple_repeat 3 35 0 558 296 44 15 chr1 52665493 52665699 -189998654 - MIR SINE MIR -41 221 10 459 325 47 26 chr1 52666082 52666316 -189998037 - MIR SINE MIR -1 261 23 435 316 100 47 chr1 52667309 52667648 -189996705 + L2 LINE L2 2916 3272 0 249 232 56 80 chr1 52667814 52667939 -189996414 + MIR SINE MIR 73 194 -68 300 349 102 0 chr1 52668097 52668319 -189996034 + MIR SINE MIR 20 262 0 329 254 127 32 chr1 52668837 52668933 -189995420 + MIR SINE MIR 46 158 -104 1256 254 24 9 chr1 52668933 52669264 -189995089 - MER46C DNA MER2_type -2 336 1 329 254 127 32 chr1 52669264 52669293 -189995060 + MIR SINE MIR 158 183 -79 476 226 34 41 chr1 52669367 52669513 -189994840 + MER5B DNA MER1_type 5 149 -29 4284 182 43 10 chr1 52669530 52670760 -189993593 - L1MB7 LINE L1 0 6184 4919 267 103 0 0 chr1 52670870 52670909 -189993444 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 503 361 67 39 chr1 52671019 52671559 -189992794 - L3 LINE CR1 -98 1479 925 454 299 172 0 chr1 52671651 52671872 -189992481 - MIR SINE MIR -2 260 2 354 267 20 0 chr1 52672550 52672651 -189991702 + (TTCA)n Simple_repeat Simple_repeat 1 103 0 649 293 141 10 chr1 52672651 52672955 -189991398 + L2 LINE L2 2970 3313 0 588 326 100 14 chr1 52673828 52674107 -189990246 + L3 LINE CR1 1255 1557 -20 1062 239 28 73 chr1 52674256 52674574 -189989779 + L1MC5 LINE L1 7120 7416 -545 2600 39 0 0 chr1 52674574 52674881 -189989472 - AluY SINE Alu -4 307 1 1062 239 28 73 chr1 52674881 52674988 -189989365 + L1MC5 LINE L1 7416 7526 -435 244 311 110 26 chr1 52675052 52675095 -189989258 + L1ME3A LINE L1 5924 5962 -208 2042 99 28 0 chr1 52675095 52675377 -189988976 + AluY SINE Alu 6 295 -16 244 311 110 26 chr1 52675377 52675561 -189988792 + L1ME3A LINE L1 5962 6170 0 324 0 0 0 chr1 52676260 52676296 -189988057 + (TG)n Simple_repeat Simple_repeat 2 37 0 334 301 21 49 chr1 52676395 52676538 -189987815 + MIR3 SINE MIR 64 202 -6 348 207 35 47 chr1 52676878 52677047 -189987306 + (CACCC)n Simple_repeat Simple_repeat 4 170 0 309 200 33 61 chr1 52676962 52677142 -189987211 + C-rich Low_complexity Low_complexity 2 176 0 * 278 251 115 12 chr1 52677975 52678101 -189986252 + MIR SINE MIR 8 150 -58 2555 162 29 0 chr1 52678894 52679307 -189985046 + MSTB LTR MaLR 1 425 -1 332 293 27 11 chr1 52679405 52679524 -189984829 + MIR SINE MIR 37 155 -64 687 211 54 18 chr1 52679552 52679718 -189984635 - MER5A DNA MER1_type 0 189 18 2009 145 108 54 chr1 52679754 52680160 -189984193 - MSTA LTR MaLR 0 428 1 2431 59 10 0 chr1 52680712 52681016 -189983337 + L1PA10 LINE L1 5858 6164 -4 2231 74 3 10 chr1 52681040 52681338 -189983015 + AluY SINE Alu 1 296 -15 238 259 170 0 chr1 52681597 52681709 -189982644 - MIR SINE MIR -13 249 119 229 267 105 0 chr1 52681807 52681893 -189982460 + MIR3 SINE MIR 86 180 -28 507 304 23 58 chr1 52683499 52683980 -189980373 + L1MC4a LINE L1 1942 2405 -3991 1609 282 68 32 chr1 52684019 52685029 -189979324 + L1M4 LINE L1 3756 4802 -1344 6477 108 1 86 chr1 52686097 52687167 -189977186 + L1P LINE L1 1 979 -5167 8664 48 0 3 chr1 52687167 52689048 -189975305 + L1PA5 LINE L1 4305 6186 0 558 288 17 68 chr1 52689192 52689487 -189974866 + HAL1b LINE L1 296 575 -773 242 314 8 25 chr1 52689761 52689882 -189974471 + HAL1b LINE L1 787 905 -443 306 0 0 0 chr1 52689975 52690009 -189974344 + (CA)n Simple_repeat Simple_repeat 1 34 0 1109 215 21 29 chr1 52690371 52690613 -189973740 - MLT1F1 LTR MaLR -2 565 326 315 267 68 87 chr1 52690645 52690806 -189973547 - MLT1F1 LTR MaLR -342 200 43 258 252 26 35 chr1 52690816 52690931 -189973422 + L1MC4a LINE L1 2502 2615 -3600 29 28 0 0 chr1 52691105 52691141 -189973212 + AT_rich Low_complexity Low_complexity 1 36 0 634 146 0 0 chr1 52691149 52691252 -189973101 + L1MA4 LINE L1 6148 6250 -50 311 240 37 106 chr1 52691295 52691365 -189972988 + L1MC4a LINE L1 2854 2927 -3288 1796 156 60 38 chr1 52691365 52691730 -189972623 - THE1C LTR MaLR -2 373 1 8844 198 14 34 chr1 52691730 52693414 -189970939 - MSTA-int LTR MaLR 0 1651 1 1870 133 180 14 chr1 52693414 52693781 -189970572 - MSTA LTR MaLR 0 428 1 311 240 37 106 chr1 52693781 52693925 -189970428 + L1MC4a LINE L1 2924 3055 -3160 1213 293 84 36 chr1 52694106 52695846 -189968507 + L1MC4a LINE L1 4201 5427 -788 767 278 44 65 chr1 52695930 52696074 -189968279 + L1ME3A LINE L1 4722 4868 -1302 3568 123 2 31 chr1 52696074 52696617 -189967736 + MER1A DNA MER1_type 1 527 0 767 278 44 65 chr1 52696617 52697467 -189966886 + L1ME3A LINE L1 4868 5735 -435 1778 90 0 0 chr1 52697467 52697701 -189966652 + AluSc SINE Alu 1 234 -75 767 278 44 65 chr1 52697701 52697912 -189966441 + L1ME3A LINE L1 5735 5891 -279 227 56 56 0 chr1 52697912 52697948 -189966405 + A-rich Low_complexity Low_complexity 2 39 0 767 278 44 65 chr1 52697948 52698014 -189966339 + L1ME3A LINE L1 5891 5957 -213 2561 0 0 0 chr1 52698348 52698663 -189965690 - AluYa5 SINE Alu 0 315 1 359 296 168 0 chr1 52698670 52698849 -189965504 + L1M4 LINE L1 4384 4592 -1554 237 65 0 0 chr1 52699114 52699145 -189965208 + (TG)n Simple_repeat Simple_repeat 1 31 0 195 42 0 0 chr1 52699144 52699168 -189965185 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 2109 158 46 44 chr1 52699634 52700089 -189964264 - MER31B LTR ERV1 -10 456 1 451 287 31 77 chr1 52700521 52700716 -189963637 - MIR SINE MIR -71 191 6 597 288 125 50 chr1 52701513 52701936 -189962417 + L2 LINE L2 2804 3258 -14 195 42 0 0 chr1 52701936 52701960 -189962393 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 1078 238 16 12 chr1 52701978 52702222 -189962131 + MIR SINE MIR 18 262 0 239 330 68 0 chr1 52702275 52702363 -189961990 - L2 LINE L2 -12 3301 3208 688 318 41 0 chr1 52702847 52703067 -189961286 - MIR SINE MIR -20 242 14 433 325 83 18 chr1 52703185 52703354 -189960999 - MIR SINE MIR -12 250 71 1550 276 139 18 chr1 52703702 52704471 -189959882 - L2 LINE L2 -313 3000 2141 186 103 0 0 chr1 52705147 52705176 -189959177 + (TG)n Simple_repeat Simple_repeat 2 30 0 583 211 44 0 chr1 52705176 52705290 -189959063 - FLAM_C SINE Alu -14 119 1 201 364 93 0 chr1 52705686 52705804 -189958549 + L2 LINE L2 3138 3266 -6 306 253 25 0 chr1 52706280 52706359 -189957994 + MIR SINE MIR 65 145 -117 347 258 258 39 chr1 52706626 52706781 -189957572 - MIR3 SINE MIR -17 191 3 206 327 0 0 chr1 52707896 52707951 -189956402 - MIR SINE MIR -159 103 49 1018 213 21 21 chr1 52708069 52708304 -189956049 - MIR SINE MIR -23 239 5 952 288 127 36 chr1 52708516 52709044 -189955309 + L2 LINE L2 2385 2960 -354 214 326 171 16 chr1 52709107 52709294 -189955059 + L2 LINE L2 3098 3313 0 2492 120 19 5 chr1 52709524 52709892 -189954461 + THE1C LTR MaLR 3 375 0 310 278 61 35 chr1 52709907 52710022 -189954331 - MIR SINE MIR -114 148 31 533 207 11 77 chr1 52710123 52710311 -189954042 - MER5A DNA MER1_type -1 188 1 267 269 57 90 chr1 52710314 52710526 -189953827 + L2 LINE L2 2770 2974 -340 547 263 29 0 chr1 52710638 52710775 -189953578 - MIR3 SINE MIR -6 202 62 217 333 185 0 chr1 52711056 52711164 -189953189 - MIR SINE MIR -2 260 133 221 300 79 51 chr1 52711201 52711454 -189952899 - L2 LINE L2 -181 3091 2832 215 336 15 7 chr1 52711789 52711926 -189952427 + (TG)n Simple_repeat Simple_repeat 1 138 0 187 250 0 19 chr1 52712382 52712434 -189951919 - L2 LINE L2 -15 3298 3248 334 361 144 35 chr1 52713005 52713379 -189950974 + L2 LINE L2 2446 2860 -454 325 281 159 33 chr1 52713601 52713939 -189950414 - L2 LINE L2 -214 3058 2674 410 245 88 0 chr1 52714437 52714539 -189949814 - L2 LINE L2 -8 3264 3154 567 320 124 11 chr1 52714938 52715300 -189949053 - L2 LINE L2 0 3272 2870 617 273 101 93 chr1 52715301 52715458 -189948895 + MLT1I LTR MaLR 22 176 -233 2151 103 10 6 chr1 52715458 52715769 -189948584 - AluSx SINE Alu 0 312 1 617 273 101 93 chr1 52715769 52715996 -189948357 + MLT1I LTR MaLR 176 409 0 617 339 50 18 chr1 52716020 52716516 -189947837 - L2 LINE L2 -556 2758 2247 383 267 229 24 chr1 52718884 52719225 -189945128 - L2 LINE L2 -15 3257 2847 223 284 62 25 chr1 52719871 52719952 -189944401 + MIR3 SINE MIR 71 154 -54 251 204 102 23 chr1 52720048 52720136 -189944217 + MIR SINE MIR 30 124 -84 732 309 150 11 chr1 52720261 52720708 -189943645 + L2 LINE L2 2804 3312 -1 256 253 53 0 chr1 52720724 52720799 -189943554 - MIR SINE MIR -93 169 91 213 290 112 9 chr1 52721572 52721679 -189942674 + L3 LINE CR1 1306 1423 -154 414 76 0 30 chr1 52722837 52722903 -189941450 - L1MA3 LINE L1 0 6305 6242 268 288 186 8 chr1 52723289 52723407 -189940946 - MIR3 SINE MIR -15 193 55 334 277 95 36 chr1 52723508 52723645 -189940708 + MIR SINE MIR 15 159 -103 292 175 163 38 chr1 52723668 52723748 -189940605 - MER5C DNA MER1_type -6 318 229 364 259 52 26 chr1 52723762 52723878 -189940475 - MER5C DNA MER1_type -200 124 6 252 317 19 29 chr1 52725647 52725751 -189938602 + L3 LINE CR1 1418 1520 -57 456 35 0 0 chr1 52726149 52726207 -189938146 + (TG)n Simple_repeat Simple_repeat 2 59 0 463 310 89 79 chr1 52726487 52726590 -189937763 + L2 LINE L2 2943 3043 -229 1904 114 20 0 chr1 52726590 52726888 -189937465 - AluSc SINE Alu -5 304 1 463 310 89 79 chr1 52726888 52727022 -189937331 + L2 LINE L2 3043 3186 -86 1226 194 78 58 chr1 52727022 52727404 -189936949 - MLT1B LTR MaLR 0 390 1 463 310 89 79 chr1 52727404 52727468 -189936885 + L2 LINE L2 3186 3248 -24 227 300 91 45 chr1 52727715 52727836 -189936517 - MIR SINE MIR -76 132 16 595 289 153 5 chr1 52728348 52728538 -189935815 + MIR SINE MIR 23 240 -22 202 353 128 0 chr1 52729790 52729892 -189934461 - L2 LINE L2 0 3272 3158 670 298 75 13 chr1 52731181 52731409 -189932944 - MIR SINE MIR 0 262 21 428 217 148 9 chr1 52731461 52731576 -189932777 + MIR SINE MIR 95 225 -37 218 354 57 19 chr1 52731753 52731911 -189932442 - L2 LINE L2 -2 3270 3107 319 280 152 0 chr1 52731962 52732087 -189932266 + L2 LINE L2 2920 3063 -209 531 285 86 27 chr1 52732398 52732619 -189931734 + MIR SINE MIR 22 255 -7 200 369 45 45 chr1 52732927 52733103 -189931250 + L2 LINE L2 3128 3303 -10 774 246 153 29 chr1 52733176 52733595 -189930758 + L1ME4a LINE L1 5358 5828 -293 23 0 0 0 chr1 52733660 52733683 -189930670 + AT_rich Low_complexity Low_complexity 1 23 0 302 279 112 19 chr1 52733741 52733902 -189930451 + L1ME4a LINE L1 5571 5746 -375 727 217 0 4 chr1 52734177 52734321 -189930032 + MIR SINE MIR 3 142 -66 1079 225 161 10 chr1 52734506 52734923 -189929430 - LTR33 LTR ERVL -5 516 37 283 278 87 26 chr1 52734934 52735049 -189929304 + MIR SINE MIR 140 261 -1 28 47 0 31 chr1 52735106 52735122 -189929231 + AT_rich Low_complexity Low_complexity 1 16 -46 2471 68 0 3 chr1 52735122 52735415 -189928938 + AluSc SINE Alu 1 292 -17 28 47 0 31 chr1 52735415 52735462 -189928891 + AT_rich Low_complexity Low_complexity 16 62 0 488 264 65 58 chr1 52735473 52735698 -189928655 + L1ME4a LINE L1 5827 6056 -65 1055 144 6 40 chr1 52735698 52735872 -189928481 - FAM SINE Alu -7 168 1 488 264 65 58 chr1 52735872 52735938 -189928415 + L1ME4a LINE L1 6056 6120 -1 526 281 22 7 chr1 52736016 52736155 -189928198 - MIR SINE MIR -109 153 13 332 345 47 5 chr1 52736269 52736460 -189927893 + L2 LINE L2 2892 3090 -182 758 274 79 17 chr1 52736579 52736871 -189927482 + MER102b DNA MER1_type 6 315 -26 846 169 246 26 chr1 52736899 52737171 -189927182 - MLT1H LTR MaLR -1 548 217 253 208 0 0 chr1 52737171 52737219 -189927134 - L2 LINE L2 -268 3045 2998 508 252 65 7 chr1 52737390 52737529 -189926824 - MLT1H LTR MaLR -390 159 13 226 176 0 39 chr1 52737559 52737610 -189926743 + L2 LINE L2 3223 3271 -1 194 317 102 60 chr1 52738173 52738286 -189926067 + MIR3 SINE MIR 30 154 -54 2319 122 0 0 chr1 52738286 52738598 -189925755 - AluSq SINE Alu -1 312 1 194 317 102 60 chr1 52738598 52738651 -189925702 + MIR3 SINE MIR 154 203 -5 288 0 0 0 chr1 52738651 52738683 -189925670 + (CA)n Simple_repeat Simple_repeat 2 33 0 812 222 75 75 chr1 52738762 52739096 -189925257 + L2 LINE L2 2980 3313 0 288 225 42 28 chr1 52739250 52739321 -189925032 - MIR SINE MIR -112 150 79 431 310 64 29 chr1 52739646 52739817 -189924536 + MLT1K LTR MaLR 173 349 -239 453 234 9 18 chr1 52739983 52740094 -189924259 + MLT1K LTR MaLR 470 579 -9 2065 116 58 3 chr1 52740381 52740674 -189923679 - AluSx SINE Alu -3 309 1 1729 162 15 89 chr1 52740782 52741176 -189923177 + MLT1A1 LTR MaLR 1 365 0 716 309 23 39 chr1 52741325 52741584 -189922769 + MIR SINE MIR 8 262 0 293 376 62 10 chr1 52741594 52741788 -189922565 - MIR SINE MIR -11 251 48 490 254 163 12 chr1 52742090 52742287 -189922066 - MIR SINE MIR -15 247 23 248 340 80 0 chr1 52742381 52742481 -189921872 + L2 LINE L2 3175 3282 -31 2476 268 68 30 chr1 52742627 52742825 -189921528 - L1ME3A LINE L1 -2 6237 6048 2127 137 3 0 chr1 52742825 52743132 -189921221 + AluSx SINE Alu 1 308 -4 2476 268 68 30 chr1 52743132 52744750 -189919603 - L1ME3A LINE L1 -191 6048 4351 1120 188 14 116 chr1 52744822 52745167 -189919186 - MLT1A1 LTR MaLR 0 365 56 668 267 8 11 chr1 52745187 52745449 -189918904 - L1ME3A LINE L1 -3984 2412 2152 544 290 94 48 chr1 52745459 52746542 -189917811 - L1MDa LINE L1 -4312 2084 939 1403 113 39 0 chr1 52746542 52746773 -189917580 - L1MA5A LINE L1 -5 6292 6053 544 290 94 48 chr1 52746773 52746839 -189917514 - L1MDa LINE L1 -5457 939 878 3296 193 89 17 chr1 52747523 52748390 -189915963 + MER63C DNA MER1_type 1 929 -1 368 376 32 0 chr1 52748405 52748562 -189915791 - MIR SINE MIR -22 240 79 674 284 200 24 chr1 52749057 52749766 -189914587 + L2 LINE L2 2466 3309 -4 231 303 15 15 chr1 52750538 52750670 -189913683 + (TCTCTG)n Simple_repeat Simple_repeat 6 137 0 292 293 125 105 chr1 52751496 52751602 -189912751 - L2 LINE L2 0 3272 3170 2427 92 3 0 chr1 52751602 52751906 -189912447 + AluSx SINE Alu 1 305 -7 292 293 125 105 chr1 52751906 52752256 -189912097 - L2 LINE L2 -102 3170 2807 572 243 104 0 chr1 52752435 52752579 -189911774 + MIR SINE MIR 49 207 -55 181 318 12 24 chr1 52754012 52754097 -189910256 - L2 LINE L2 -4 3268 3185 1785 161 105 0 chr1 52754111 52754464 -189909889 - MLT1B LTR MaLR 0 390 1 920 178 18 6 chr1 52754995 52755164 -189909189 + MIR SINE MIR 80 250 -12 450 317 86 47 chr1 52755282 52756061 -189908292 + L2 LINE L2 2455 3271 -1 286 344 32 0 chr1 52756067 52756160 -189908193 - MIR SINE MIR -90 172 77 394 301 251 5 chr1 52756180 52756383 -189907970 + L2 LINE L2 2934 3186 -86 292 271 0 0 chr1 52756819 52756878 -189907475 + MIR3 SINE MIR 113 171 -37 435 316 102 6 chr1 52757129 52757306 -189907047 + L3 LINE CR1 897 1090 -487 959 325 44 6 chr1 52757316 52757658 -189906695 + L3 LINE CR1 1218 1572 -5 243 313 69 46 chr1 52757681 52757812 -189906541 - L2 LINE L2 -50 3222 3089 657 170 314 0 chr1 52757911 52758070 -189906283 + MER3 DNA MER1_type 1 209 0 273 125 0 0 chr1 52758077 52758117 -189906236 - MER3 DNA MER1_type -169 40 1 265 254 90 0 chr1 52758236 52758303 -189906050 + MIR SINE MIR 74 146 -62 201 167 28 0 chr1 52758746 52758782 -189905571 + GA-rich Low_complexity Low_complexity 4 40 0 203 152 0 0 chr1 52759365 52759398 -189904955 + (CA)n Simple_repeat Simple_repeat 2 34 0 304 254 0 0 chr1 52759608 52759667 -189904686 + MIR3 SINE MIR 113 171 -37 21 36 0 0 chr1 52763134 52763162 -189901191 + AT_rich Low_complexity Low_complexity 1 28 0 201 361 0 0 chr1 52763445 52763506 -189900847 - MIR3 SINE MIR -4 204 144 288 0 0 0 chr1 52763519 52763551 -189900802 + (CA)n Simple_repeat Simple_repeat 1 32 0 5613 53 0 50 chr1 52764707 52765462 -189898891 - L1PA7 LINE L1 0 6154 5438 2354 100 10 0 chr1 52765470 52765771 -189898582 - AluSp SINE Alu -9 304 1 276 301 24 0 chr1 52765946 52766029 -189898324 + MIR3 SINE MIR 81 165 -43 299 211 21 63 chr1 52766373 52766468 -189897885 + MIR3 SINE MIR 97 187 -21 211 259 0 0 chr1 52767646 52767700 -189896653 - L3b LINE CR1 -188 1395 1342 292 304 57 25 chr1 52768288 52768446 -189895907 + MIR SINE MIR 89 251 -11 181 133 200 0 chr1 52768541 52768586 -189895767 + MIR SINE MIR 176 229 -33 352 298 132 5 chr1 52769112 52769317 -189895036 + L3 LINE CR1 1305 1535 -42 * 500 287 77 26 chr1 52769314 52769509 -189894844 + MIR SINE MIR 19 223 -39 998 204 73 9 chr1 52769634 52769854 -189894499 - MIR SINE MIR -5 257 24 860 147 157 26 chr1 52769972 52770163 -189894190 - MER58A DNA MER1_type -8 216 1 239 308 55 34 chr1 52770854 52771000 -189893353 + MIR3 SINE MIR 8 156 -52 287 292 71 52 chr1 52771824 52771978 -189892375 - MIR3 SINE MIR -27 181 25 381 186 0 35 chr1 52772190 52772276 -189892077 + MIR SINE MIR 71 153 -109 331 261 70 35 chr1 52773463 52773578 -189890775 - L2 LINE L2 -15 3298 3180 235 314 25 8 chr1 52773649 52773770 -189890583 + (TGAA)n Simple_repeat Simple_repeat 3 125 0 1242 100 12 0 chr1 52774036 52774196 -189890157 - AluSg/x SINE Alu -15 297 136 2364 81 3 50 chr1 52774198 52774518 -189889835 - AluSx SINE Alu -7 305 1 1351 270 49 55 chr1 52774641 52775196 -189889157 + L2 LINE L2 2772 3313 0 420 335 54 30 chr1 52775992 52776195 -189888158 - MIR SINE MIR -9 253 46 532 320 72 22 chr1 52777811 52777992 -189886361 + MIR SINE MIR 22 211 -51 1904 171 37 40 chr1 52778143 52778518 -189885835 - MLT1A2 LTR MaLR 0 374 1 241 270 81 45 chr1 52779877 52779988 -189884365 - MER5B DNA MER1_type -22 156 42 28 0 0 0 chr1 52780010 52780038 -189884315 + AT_rich Low_complexity Low_complexity 1 28 0 1701 205 0 10 chr1 52780101 52780408 -189883945 - AluJb SINE Alu -8 304 1 287 304 33 0 chr1 52780593 52780685 -189883668 - MIR3 SINE MIR -42 166 72 226 167 0 0 chr1 52780710 52780746 -189883607 + MIR SINE MIR 226 261 -1 234 232 61 20 chr1 52781821 52781920 -189882433 + (CAGAGA)n Simple_repeat Simple_repeat 3 105 0 225 257 154 11 chr1 52783899 52784035 -189880318 - MIR3 SINE MIR -82 126 2 282 264 179 57 chr1 52784431 52784571 -189879782 - MIR SINE MIR -71 191 35 377 307 92 7 chr1 52784621 52784774 -189879579 + MIR SINE MIR 18 183 -79 616 196 98 7 chr1 52785251 52785394 -189878959 - MER5A DNA MER1_type 0 189 34 636 233 148 31 chr1 52786357 52786589 -189877764 - MIR SINE MIR 0 262 6 261 180 0 0 chr1 52786607 52786657 -189877696 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 330 296 201 37 chr1 52786664 52786853 -189877500 - MIR SINE MIR -6 256 37 584 225 35 47 chr1 52787265 52787434 -189876919 + MIR SINE MIR 26 192 -70 243 0 0 0 chr1 52787803 52787830 -189876523 + (TG)n Simple_repeat Simple_repeat 2 28 0 430 248 32 51 chr1 52787893 52788050 -189876303 - L2 LINE L2 -7 3306 3153 301 263 136 25 chr1 52788044 52788162 -189876191 + MIR SINE MIR 54 184 -78 * 314 355 12 6 chr1 52788743 52788915 -189875438 + (CAACC)n Simple_repeat Simple_repeat 3 175 0 280 265 59 0 chr1 52789167 52789269 -189875084 - L1MC5 LINE L1 -46 7915 7808 325 291 48 6 chr1 52789451 52789616 -189874737 + LTR67 LTR ERVL 373 544 -13 265 359 6 12 chr1 52789665 52789832 -189874521 + (CAACC)n Simple_repeat Simple_repeat 2 167 0 220 291 0 13 chr1 52789886 52789965 -189874388 + (CAACC)n Simple_repeat Simple_repeat 5 82 0 2288 228 52 15 chr1 52790323 52790915 -189873438 + MLT1E2 LTR MaLR 11 624 -2 567 286 121 18 chr1 52790991 52791215 -189873138 + MIR SINE MIR 6 252 -10 180 147 88 0 chr1 52791185 52791219 -189873134 + L2 LINE L2 3224 3260 -12 * 576 259 79 5 chr1 52791949 52792138 -189872215 - MER63A DNA MER1_type -2 208 6 749 270 31 18 chr1 52792486 52792708 -189871645 + MIR SINE MIR 29 253 -9 242 309 29 0 chr1 52792723 52792791 -189871562 + L2 LINE L2 3190 3259 -13 310 240 40 0 chr1 52792965 52793040 -189871313 - L2 LINE L2 -6 3266 3189 200 269 54 94 chr1 52793177 52793326 -189871027 + MIR SINE MIR 31 173 -89 283 204 58 18 chr1 52793427 52793525 -189870828 - MIR SINE MIR -61 147 49 367 301 147 19 chr1 52794069 52794225 -189870128 - L2 LINE L2 -1 3271 3096 381 282 153 0 chr1 52794245 52794408 -189869945 - MIR SINE MIR -12 250 63 263 306 99 8 chr1 52794483 52794604 -189869749 - L2 LINE L2 -222 3050 2919 698 313 128 60 chr1 52794644 52795752 -189868601 + L2 LINE L2 2059 3248 -24 276 295 137 0 chr1 52795908 52796003 -189868350 + MIR3 SINE MIR 58 165 -43 312 220 30 60 chr1 52796409 52796509 -189867844 - MIR SINE MIR -59 149 53 262 244 104 26 chr1 52796593 52796708 -189867645 + MIR3 SINE MIR 13 136 -72 433 287 8 0 chr1 52797439 52797561 -189866792 + MIR3 SINE MIR 47 169 -39 363 264 0 11 chr1 52797718 52797809 -189866544 + MIR SINE MIR 51 140 -122 252 0 0 0 chr1 52797809 52797837 -189866516 + (A)n Simple_repeat Simple_repeat 1 28 0 226 328 70 16 chr1 52798193 52798321 -189866032 - MIR3 SINE MIR -54 154 20 22 0 0 0 chr1 52798851 52798873 -189865480 + GC_rich Low_complexity Low_complexity 1 22 0 295 293 140 24 chr1 52799092 52799256 -189865097 + MIR SINE MIR 46 228 -34 612 333 43 16 chr1 52800129 52800384 -189863969 - MIR SINE MIR 0 262 1 586 323 138 5 chr1 52801157 52801374 -189862979 - MIR SINE MIR -15 247 2 1249 266 57 52 chr1 52801777 52802217 -189862136 + MER65A-int LTR ERV1 4430 4871 0 2221 144 47 7 chr1 52802217 52802384 -189861969 + MER65A LTR ERV1 1 160 -285 351 0 0 0 chr1 52802384 52802423 -189861930 + (CA)n Simple_repeat Simple_repeat 2 40 0 2221 144 47 7 chr1 52802423 52802658 -189861695 + MER65A LTR ERV1 160 419 -26 2054 152 36 30 chr1 52802658 52803020 -189861333 + THE1B LTR MaLR 1 364 0 1156 276 116 16 chr1 52803039 52803478 -189860875 + MLT1H1 LTR MaLR 73 555 0 35 83 0 0 chr1 52803526 52803610 -189860743 + AT_rich Low_complexity Low_complexity 1 84 0 2604 58 0 3 chr1 52803774 52804083 -189860270 - AluY SINE Alu -3 308 1 317 294 28 96 chr1 52805037 52805360 -189858993 - L1MC4 LINE L1 -981 7061 6761 270 73 0 0 chr1 52806314 52806355 -189857998 + (CA)n Simple_repeat Simple_repeat 2 42 0 29 60 0 0 chr1 52806604 52806654 -189857699 + AT_rich Low_complexity Low_complexity 1 50 0 1194 112 0 6 chr1 52806862 52807049 -189857304 + AluSg/x SINE Alu 125 310 0 1448 273 69 28 chr1 52807049 52807659 -189856694 - L1MC4 LINE L1 -594 5560 5296 1960 129 0 52 chr1 52807878 52808187 -189856166 - AluSx SINE Alu -19 293 1 625 332 93 23 chr1 52808303 52809043 -189855310 - L1MC4 LINE L1 -1043 5103 4312 545 283 39 14 chr1 52809803 52810089 -189854264 - L1MC4 LINE L1 -2191 3955 3663 489 263 44 0 chr1 52810211 52810325 -189854028 - MIR SINE MIR -74 188 70 475 319 0 0 chr1 52810469 52810604 -189853749 + MIR SINE MIR 58 192 -70 365 301 13 13 chr1 52811122 52811275 -189853078 - L1MA9 LINE L1 -202 6110 5958 319 352 53 11 chr1 52811481 52811745 -189852608 - L1ME4a LINE L1 -178 5943 5669 288 0 0 0 chr1 52812401 52812433 -189851920 + (CA)n Simple_repeat Simple_repeat 2 33 0 207 350 90 34 chr1 52812533 52812767 -189851586 - L2 LINE L2 0 3272 3026 357 258 296 23 chr1 52813242 52813502 -189850851 - L2 LINE L2 -985 2329 1999 8317 170 7 9 chr1 52813502 52815771 -189848582 + L1PA14 LINE L1 3888 6159 -2 487 249 108 16 chr1 52815965 52816150 -189848203 - L2 LINE L2 -1340 1974 1773 301 279 13 0 chr1 52816165 52816244 -189848109 + LTR67 LTR ERVL 2 81 -476 647 201 7 0 chr1 52816519 52816673 -189847680 + (TGG)n Simple_repeat Simple_repeat 2 156 0 903 161 0 0 chr1 52816691 52816871 -189847482 + (TGG)n Simple_repeat Simple_repeat 1 180 0 211 200 0 0 chr1 52816871 52816906 -189847447 + (ATGGTG)n Simple_repeat Simple_repeat 1 35 0 279 0 0 0 chr1 52817049 52817080 -189847273 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1524 231 35 54 chr1 52817087 52817571 -189846782 - L1ME1 LINE L1 -32 6134 5660 418 173 0 12 chr1 52817571 52817652 -189846701 + LTR67 LTR ERVL 473 552 -5 901 347 69 10 chr1 52817658 52818254 -189846099 - L2 LINE L2 -1549 1765 1135 207 300 12 25 chr1 52818297 52818377 -189845976 + L2 LINE L2 3235 3313 0 391 319 18 31 chr1 52818395 52818558 -189845795 - MIR3 SINE MIR -29 179 19 258 306 0 0 chr1 52818578 52818640 -189845713 + MIR SINE MIR 46 107 -155 895 56 71 24 chr1 52818692 52818818 -189845535 - L1PA8 LINE L1 -7 6165 6034 191 238 0 0 chr1 52818822 52818864 -189845489 - MIR SINE MIR -120 142 101 235 232 37 61 chr1 52819316 52819398 -189844955 + MLT1H LTR MaLR 454 533 -16 320 266 83 46 chr1 52819405 52819514 -189844839 - L2 LINE L2 -16 3256 3144 279 254 136 18 chr1 52820029 52820139 -189844214 + MIR SINE MIR 108 230 -32 225 204 23 0 chr1 52820218 52820262 -189844091 + MIR SINE MIR 96 140 -68 198 379 32 11 chr1 52820288 52820383 -189843970 + L2 LINE L2 3146 3242 -30 561 55 22 11 chr1 52820710 52820801 -189843552 + (TCTA)n Simple_repeat Simple_repeat 3 94 0 1732 178 0 7 chr1 52820809 52821090 -189843263 - AluJb SINE Alu -33 279 1 1830 277 112 23 chr1 52821163 52822235 -189842118 - L2 LINE L2 -3 3310 2133 22 0 0 0 chr1 52822235 52822257 -189842096 + AT_rich Low_complexity Low_complexity 1 22 0 289 317 109 33 chr1 52822474 52822657 -189841696 + MIR SINE MIR 14 210 -52 440 269 144 24 chr1 52824084 52824251 -189840102 + MIR SINE MIR 76 262 0 710 273 16 27 chr1 52824394 52824581 -189839772 - MIR SINE MIR -65 197 13 226 338 54 20 chr1 52825096 52825244 -189839109 - L2 LINE L2 -214 3058 2906 451 346 6 6 chr1 52826440 52826596 -189837757 - MIR3 SINE MIR -2 206 51 433 342 37 0 chr1 52826747 52826908 -189837445 - MIR SINE MIR -50 212 46 2428 253 48 24 chr1 52827081 52827845 -189836508 - MER20B DNA MER1_type 0 784 2 234 254 142 47 chr1 52828724 52828893 -189835460 + MIR3 SINE MIR 8 192 -16 259 260 73 31 chr1 52829351 52829447 -189834906 - MIR SINE MIR -77 185 86 237 324 9 9 chr1 52829708 52829813 -189834540 - MIR SINE MIR -50 212 108 317 331 8 0 chr1 52830199 52830332 -189834021 + CT-rich Low_complexity Low_complexity 2 135 0 439 246 43 71 chr1 52831476 52831645 -189832708 - MIR3 SINE MIR -27 181 23 651 274 128 5 chr1 52832255 52832484 -189831869 + MIR SINE MIR 4 256 -6 208 338 155 39 chr1 52833012 52833592 -189830761 - L2 LINE L2 -184 3088 2447 337 231 39 0 chr1 52834477 52834555 -189829798 - MIR SINE MIR -62 146 66 456 399 26 9 chr1 52834953 52835181 -189829172 - L3 LINE CR1 -1 1576 1345 205 113 0 57 chr1 52835181 52835234 -189829119 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 420 350 182 3 chr1 52835236 52835522 -189828831 - L2 LINE L2 -1 3271 2935 243 254 15 30 chr1 52836251 52836318 -189828035 + MIR SINE MIR 70 135 -73 455 227 24 78 chr1 52838075 52838277 -189826076 + MIR SINE MIR 17 212 -50 305 278 56 9 chr1 52838463 52838571 -189825782 + MIR3 SINE MIR 44 156 -52 415 294 81 20 chr1 52839904 52840056 -189824297 - MIR SINE MIR -1 261 96 540 291 79 11 chr1 52840788 52840977 -189823376 - MIR SINE MIR -16 246 45 312 261 11 22 chr1 52841995 52842087 -189822266 + MIR SINE MIR 172 262 0 202 264 23 58 chr1 52842128 52842215 -189822138 - MIR SINE MIR 0 262 179 180 77 0 0 chr1 52842512 52842538 -189821815 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 315 314 64 14 chr1 52843124 52843264 -189821089 + MIR3 SINE MIR 36 182 -26 271 216 194 29 chr1 52843852 52843991 -189820362 - MIR3 SINE MIR -5 203 42 278 231 64 0 chr1 52845489 52845567 -189818786 + MIR SINE MIR 62 144 -118 2456 93 30 35 chr1 52846748 52847114 -189817239 + THE1B LTR MaLR 1 364 0 378 304 12 8 chr1 52847413 52847559 -189816794 - MER5A DNA MER1_type 0 178 29 262 319 83 25 chr1 52848019 52848176 -189816177 - L3 LINE CR1 -9 1568 1403 799 286 103 6 chr1 52848977 52849288 -189815065 - L2 LINE L2 0 3313 2973 607 272 52 21 chr1 52849295 52849507 -189814846 + MIR SINE MIR 46 260 -2 639 281 95 4 chr1 52849584 52849815 -189814538 + MIR SINE MIR 3 254 -8 719 236 61 11 chr1 52850797 52851023 -189813330 + MIR SINE MIR 23 258 -4 188 286 102 0 chr1 52851144 52851242 -189813111 - L2 LINE L2 -21 3251 3144 686 192 254 5 chr1 52852026 52852219 -189812134 + MIR SINE MIR 2 242 -20 262 301 12 12 chr1 52852733 52852816 -189811537 - L2 LINE L2 0 3272 3190 234 254 93 51 chr1 52853534 52853652 -189810701 + MIR SINE MIR 20 142 -66 297 311 94 67 chr1 52853769 52854129 -189810224 - L2 LINE L2 -18 3254 2885 224 403 0 18 chr1 52854193 52854350 -189810003 + MIR SINE MIR 41 192 -63 201 246 232 0 chr1 52855077 52855146 -189809207 + MER91C DNA MER1_type 36 120 -20 309 323 267 10 chr1 52855241 52855743 -189808610 + L2 LINE L2 2022 2652 -662 354 288 63 0 chr1 52855790 52855901 -189808452 + L2 LINE L2 3155 3272 0 222 96 39 19 chr1 52856417 52856469 -189807884 + GA-rich Low_complexity Low_complexity 2 54 0 436 301 17 0 chr1 52856538 52856711 -189807642 + GA-rich Low_complexity Low_complexity 1 176 0 329 365 29 15 chr1 52857013 52857150 -189807203 - MER91A DNA MER1_type -13 183 45 236 352 104 33 chr1 52857186 52857368 -189806985 + MIR3 SINE MIR 11 205 -3 536 236 72 16 chr1 52857412 52857599 -189806754 - MIR SINE MIR -54 208 5 242 333 167 6 chr1 52858572 52858728 -189805625 + L3 LINE CR1 1345 1525 -52 238 239 15 15 chr1 52858911 52858978 -189805375 - MIR SINE MIR -151 111 45 330 280 32 40 chr1 52859485 52859610 -189804743 - MIR SINE MIR -123 139 16 1535 177 32 29 chr1 52860039 52860350 -189804003 - AluJo SINE Alu 0 312 1 194 158 0 0 chr1 52860564 52860602 -189803751 + L2 LINE L2 3027 3064 -208 198 396 0 21 chr1 52860643 52860739 -189803614 - MIR3 SINE MIR -6 202 109 270 0 0 0 chr1 52861118 52861148 -189803205 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 185 345 67 50 chr1 52861307 52861426 -189802927 + L3 LINE CR1 1457 1577 0 210 204 0 93 chr1 52862137 52862191 -189802162 - L3 LINE CR1 -5 1572 1524 180 333 0 0 chr1 52862585 52862639 -189801714 + L2 LINE L2 1147 1200 -2114 400 298 28 28 chr1 52862688 52862869 -189801484 - MER117 DNA MER1_type -6 191 11 480 315 59 51 chr1 52862908 52863299 -189801054 + L2 LINE L2 1315 1708 -1606 330 263 159 6 chr1 52863991 52864165 -189800188 + MIR SINE MIR 33 241 -21 536 301 37 1 chr1 52864230 52864400 -189799953 - MIR SINE MIR -67 141 6 244 387 42 0 chr1 52865234 52865376 -189798977 + MIR3 SINE MIR 46 193 -15 195 139 0 0 chr1 52865607 52865643 -189798710 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 292 341 30 15 chr1 52866534 52866666 -189797687 - MIR3 SINE MIR -52 156 23 236 208 0 0 chr1 52866997 52867045 -189797308 + MLT1I LTR MaLR 309 356 -53 206 271 0 17 chr1 52867127 52867186 -189797167 + GA-rich Low_complexity Low_complexity 4 61 0 195 256 152 114 chr1 52867340 52867551 -189796802 - MIR SINE MIR -15 247 29 219 333 114 0 chr1 52867764 52867869 -189796484 + MIR SINE MIR 37 153 -55 1535 158 93 7 chr1 52868138 52868416 -189795937 - AluJo SINE Alu 0 302 1 201 250 202 0 chr1 52868491 52868595 -189795758 - MIR SINE MIR -14 248 124 253 375 10 0 chr1 52868699 52868803 -189795550 + L2 LINE L2 3145 3249 -23 335 307 0 0 chr1 52868892 52868967 -189795386 + MIR SINE MIR 80 154 -108 298 310 0 0 chr1 52870018 52870089 -189794264 - MER91B DNA MER1_type -119 71 1 596 257 66 82 chr1 52870393 52870650 -189793703 + MIR SINE MIR 8 260 -2 300 353 24 48 chr1 52871360 52871567 -189792786 - L2 LINE L2 -3 3269 3068 226 254 119 51 chr1 52872866 52872984 -189791369 - L2 LINE L2 -3 3269 3144 246 32 0 0 chr1 52873350 52873381 -189790972 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1307 277 49 37 chr1 52873381 52873977 -189790376 - L2 LINE L2 0 3313 2707 446 303 0 0 chr1 52874628 52874750 -189789603 + MIR SINE MIR 65 186 -76 203 114 57 0 chr1 52875722 52875757 -189788596 - MIR SINE MIR -56 152 116 186 43 0 0 chr1 52875757 52875780 -189788573 + (GGGAA)n Simple_repeat Simple_repeat 5 27 0 334 344 89 32 chr1 52876040 52876533 -189787820 + L2 LINE L2 2570 3086 -186 522 229 254 31 chr1 52876552 52876906 -189787447 + MLT1H LTR MaLR 2 434 -115 325 314 59 8 chr1 52877006 52877124 -189787229 + L2 LINE L2 3148 3271 -42 243 289 13 0 chr1 52877994 52878070 -189786283 + MIR SINE MIR 181 257 -5 195 186 93 0 chr1 52878102 52878145 -189786208 - L3 LINE CR1 -7 1570 1524 406 269 40 48 chr1 52878381 52878538 -189785815 - MIR3 SINE MIR -46 162 14 228 264 38 65 chr1 52878665 52878796 -189785557 - MIR SINE MIR -69 139 35 682 248 90 26 chr1 52879055 52879289 -189785064 - MIR SINE MIR -9 253 5 312 339 54 0 chr1 52879329 52879459 -189784894 - MIR SINE MIR -111 151 15 433 239 7 97 chr1 52880330 52880485 -189783868 - L2 LINE L2 -31 3282 3142 4226 148 47 1 chr1 52880486 52880970 -189783383 + ERVL-D LTR ERVL 4933 5468 -296 210 37 0 0 chr1 52880970 52880997 -189783356 + (TG)n Simple_repeat Simple_repeat 2 28 0 4226 148 47 1 chr1 52880997 52881301 -189783052 + ERVL-D LTR ERVL 5468 5757 -7 1189 143 27 9 chr1 52881301 52881524 -189782829 + MLT2D LTR ERVL 1 227 -187 359 255 102 32 chr1 53081956 53082113 -189582240 + MER5A DNA MER1_type 3 170 -19 487 273 97 7 chr1 53082584 53082738 -189581615 - MIR SINE MIR -19 243 76 225 0 0 0 chr1 53082851 53082876 -189581477 + (CA)n Simple_repeat Simple_repeat 2 26 0 669 269 96 1 chr1 53082961 53083166 -189581187 + MIR SINE MIR 39 262 0 992 181 0 5 chr1 53083747 53083940 -189580413 + L1ME4a LINE L1 4862 5053 -1093 389 48 0 32 chr1 53084350 53084413 -189579940 + L1PA6 LINE L1 6094 6154 0 263 71 12 107 chr1 53084413 53084497 -189579856 + (TA)n Simple_repeat Simple_repeat 1 76 0 539 206 222 0 chr1 53084659 53084839 -189579514 - MER58A DNA MER1_type -1 223 4 255 284 71 31 chr1 53084982 53085109 -189579244 + MIR SINE MIR 110 241 -21 1422 160 85 18 chr1 53085159 53085440 -189578913 + AluJb SINE Alu 1 300 -12 490 78 0 0 chr1 53085681 53085745 -189578608 - Alu SINE Alu -245 65 2 304 217 101 29 chr1 53085768 53085906 -189578447 + L1ME4a LINE L1 5734 5881 -240 324 221 116 0 chr1 53085943 53086038 -189578315 + L1ME4a LINE L1 5946 6051 -70 584 301 123 44 chr1 53086122 53086601 -189577752 - LTR33 LTR ERVL -2 519 3 545 148 0 0 chr1 53086607 53086695 -189577658 - FLAM_C SINE Alu -4 139 52 342 269 150 30 chr1 53086797 53086964 -189577389 + L1ME3A LINE L1 5697 5883 -287 2119 151 9 17 chr1 53087509 53087904 -189576449 + L1MB3 LINE L1 5735 6127 -56 460 279 78 34 chr1 53088657 53088836 -189575517 + MIR SINE MIR 51 237 -25 1860 124 0 7 chr1 53088910 53089183 -189575170 + AluSx SINE Alu 1 271 -41 288 186 0 0 chr1 53089283 53089342 -189575011 - L1MC5 LINE L1 -812 7149 7091 * 4226 178 65 31 chr1 53089339 53090018 -189574335 - L1MB8 LINE L1 -1 6177 5437 1671 114 70 15 chr1 53090018 53090344 -189574009 - AluSx SINE Alu 0 312 1 4226 178 65 31 chr1 53090344 53090738 -189573615 - L1MB8 LINE L1 -741 5437 5058 667 183 0 50 chr1 53090847 53090967 -189573386 + FLAM_A SINE Alu 8 121 -21 310 239 65 32 chr1 53091035 53091190 -189573163 - L1MC5 LINE L1 -408 7553 7394 811 192 27 0 chr1 53092556 53092702 -189571651 + AluJb SINE Alu 162 311 -1 382 187 0 13 chr1 53092707 53092782 -189571571 + MLT1A1 LTR MaLR 292 365 0 187 254 90 0 chr1 53093057 53093124 -189571229 + L2 LINE L2 2902 2974 -298 260 295 114 0 chr1 53093451 53093556 -189570797 - L3 LINE CR1 -581 996 880 1054 163 0 77 chr1 53094116 53094337 -189570016 + MER3 DNA MER1_type 6 209 0 519 114 13 0 chr1 53094840 53094919 -189569434 + FLAM SINE Alu 54 133 -10 940 198 61 5 chr1 53095047 53095244 -189569109 + MER3 DNA MER1_type 2 209 0 2274 98 0 3 chr1 53095458 53095765 -189568588 + AluSq SINE Alu 1 306 -7 241 274 16 0 chr1 53096272 53096334 -189568019 + MIR SINE MIR 128 190 -72 1856 146 14 0 chr1 53096342 53096622 -189567731 + AluSx SINE Alu 1 284 -28 2258 85 3 0 chr1 53099478 53099773 -189564580 + AluSp SINE Alu 1 296 -17 295 276 125 68 chr1 53099880 53099937 -189564416 - LTR16C LTR ERVL -1 490 438 1246 178 17 74 chr1 53099937 53100235 -189564118 + AluJo SINE Alu 2 282 -30 295 276 125 68 chr1 53100235 53100369 -189563984 - LTR16C LTR ERVL -53 438 288 566 229 110 0 chr1 53100388 53100506 -189563847 + FLAM_A SINE Alu 1 131 -2 310 331 19 57 chr1 53100748 53100905 -189563448 + L1ME LINE L1 461 611 -5919 464 235 229 0 chr1 53101315 53101468 -189562885 + MIR SINE MIR 9 196 -66 2243 104 10 0 chr1 53101660 53101969 -189562384 + AluSx SINE Alu 1 312 0 759 307 53 21 chr1 53102157 53102584 -189561769 - LTR16A LTR ERVL -4 453 6 657 178 0 78 chr1 53102637 53102766 -189561587 + AluJb SINE Alu 88 206 -106 374 231 37 46 chr1 53102873 53102981 -189561372 + MIR SINE MIR 107 213 -49 2180 113 0 0 chr1 53103335 53103644 -189560709 + AluSx SINE Alu 1 309 -3 442 294 79 23 chr1 53103665 53103879 -189560474 + L1ME LINE L1 2406 2631 -3909 2032 106 27 0 chr1 53103879 53104171 -189560182 - AluSx SINE Alu -12 300 1 664 298 112 57 chr1 53104394 53104813 -189559540 - HERV16 LTR ERVL -414 5350 4909 812 301 58 44 chr1 53104819 53104965 -189559388 - HERV16 LTR ERVL -2069 2927 2785 1800 184 21 52 chr1 53104965 53105351 -189559002 + MLT1A2 LTR MaLR 1 374 0 812 301 58 44 chr1 53105351 53105546 -189558807 - HERV16 LTR ERVL -2211 2785 2581 5814 61 19 19 chr1 53105671 53106662 -189557691 - SVA Other Other -520 866 1 719 214 52 47 chr1 53107009 53107201 -189557152 + MIR SINE MIR 68 260 -2 398 250 83 26 chr1 53107335 53107491 -189556862 + L2 LINE L2 2917 3081 -191 481 272 61 7 chr1 53108034 53108181 -189556172 - MIR SINE MIR -88 174 20 5401 131 37 12 chr1 53108756 53109671 -189554682 + L1MA9 LINE L1 5335 6272 -40 1202 154 33 14 chr1 53109671 53109885 -189554468 + AluJb SINE Alu 1 218 -94 638 322 78 22 chr1 53109919 53110366 -189553987 - HERV16 LTR ERVL -3729 1925 1454 188 188 72 14 chr1 53110791 53110860 -189553493 + MIR SINE MIR 79 151 -57 609 245 19 43 chr1 53110950 53111158 -189553195 - HAL1 LINE L1 -68 2439 2237 1587 259 106 49 chr1 53111401 53112339 -189552014 - HAL1 LINE L1 -744 1763 773 879 202 126 0 chr1 53112464 53112662 -189551691 + MIR SINE MIR 14 236 -26 235 259 19 0 chr1 53112716 53112770 -189551583 - HAL1 LINE L1 -2127 380 326 1660 88 0 0 chr1 53113132 53113348 -189551005 - AluSq SINE Alu -97 216 1 904 131 0 0 chr1 53113357 53113479 -189550874 - FLAM_C SINE Alu -9 124 3 1807 152 0 3 chr1 53113491 53113781 -189550572 - AluSx SINE Alu -18 294 6 355 215 56 84 chr1 53114442 53114549 -189549804 - L2 LINE L2 -253 3060 2957 237 243 331 15 chr1 53114543 53114679 -189549674 - MIR SINE MIR -36 226 48 * 201 209 48 114 chr1 53114996 53115101 -189549252 - MIR SINE MIR -78 130 33 646 288 19 28 chr1 53115753 53115968 -189548385 + MIR SINE MIR 39 251 -11 196 244 111 33 chr1 53116239 53116329 -189548024 - L3 LINE CR1 -71 1506 1410 436 261 27 65 chr1 53116707 53116891 -189547462 + L2 LINE L2 3081 3257 -15 413 284 0 0 chr1 53116884 53116993 -189547360 - MIR SINE MIR -10 252 144 * 632 279 81 15 chr1 53116995 53117192 -189547161 + MIR SINE MIR 4 213 -49 * 657 239 74 6 chr1 53117182 53117345 -189547008 - MIR SINE MIR -87 175 2 251 264 23 0 chr1 53117831 53117918 -189546435 + MIR SINE MIR 41 129 -79 565 227 0 47 chr1 53118059 53118187 -189546166 - MIR SINE MIR -136 126 5 2070 65 18 7 chr1 53118251 53118559 -189545794 - AluY SINE Alu 0 311 1 402 239 15 54 chr1 53118582 53118712 -189545641 - MIR SINE MIR -106 156 32 2036 128 43 0 chr1 53118724 53119053 -189545300 - L1MC1 LINE L1 -1 6332 5990 6195 211 18 32 chr1 53119060 53120285 -189544068 - L1M4 LINE L1 -785 5361 4162 652 49 0 0 chr1 53120285 53120367 -189543986 - L1PA5 LINE L1 0 6154 6073 6195 211 18 32 chr1 53120367 53120739 -189543614 - L1M4 LINE L1 -1984 4162 3786 674 219 38 99 chr1 53120789 53120944 -189543409 - L1MC5 LINE L1 -58 7903 7773 2329 93 0 0 chr1 53120944 53121245 -189543108 + AluSq SINE Alu 1 301 -12 674 219 38 99 chr1 53121245 53121381 -189542972 - L1MC5 LINE L1 -188 7773 7630 328 172 0 35 chr1 53121382 53121440 -189542913 + AluSp SINE Alu 131 186 -117 242 254 0 17 chr1 53121786 53121845 -189542508 + C-rich Low_complexity Low_complexity 1 58 0 216 129 16 32 chr1 53121870 53121932 -189542421 + CT-rich Low_complexity Low_complexity 2 62 0 535 318 95 9 chr1 53122220 53122431 -189541922 - HERV16 LTR ERVL -2851 2145 1917 1107 219 50 23 chr1 53122432 53122816 -189541537 + L1M4c LINE L1 2105 2498 -3886 915 151 7 7 chr1 53122821 53122964 -189541389 + AluJb SINE Alu 137 282 -30 4733 129 38 1 chr1 53122964 53123757 -189540596 + L1MA6 LINE L1 5474 6295 -5 697 176 8 30 chr1 53123768 53123891 -189540462 + FLAM_A SINE Alu 1 122 -180 225 0 0 0 chr1 53123891 53123916 -189540437 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 5152 160 29 80 chr1 53123934 53124101 -189540252 + L1 LINE L1 4152 4326 -1820 1318 137 36 0 chr1 53124101 53124320 -189540033 + L1PA16 LINE L1 5940 6166 0 5152 160 29 80 chr1 53124320 53124381 -189539972 + L1 LINE L1 4326 4389 -1757 2059 96 38 7 chr1 53124381 53124673 -189539680 + AluSx SINE Alu 1 301 -11 5152 160 29 80 chr1 53124673 53125701 -189538652 + L1 LINE L1 4389 5345 -801 4581 68 7 0 chr1 53125701 53126277 -189538076 - SVA Other Other 0 1386 807 1308 256 82 14 chr1 53127509 53127876 -189536477 - LTR16C LTR ERVL -4 487 96 200 276 200 29 chr1 53128091 53128196 -189536157 - MIR SINE MIR -34 228 106 2827 68 3 0 chr1 53128354 53128719 -189535634 - L1PB1 LINE L1 -4 6147 5782 26 0 0 0 chr1 53128719 53128745 -189535608 + AT_rich Low_complexity Low_complexity 1 26 0 228 193 18 18 chr1 53128754 53128811 -189535542 - L1MCa LINE L1 -4353 2073 2017 * 8438 202 68 13 chr1 53128804 53131410 -189532943 - L1P5 LINE L1 -364 5787 3028 433 308 42 0 chr1 53131412 53131555 -189532798 + L2 LINE L2 2943 3091 -181 210 235 78 122 chr1 53131569 53131684 -189532669 + L2 LINE L2 3203 3312 -1 290 350 63 14 chr1 53131812 53131955 -189532398 + L2 LINE L2 3123 3272 0 1268 265 5 19 chr1 53132042 53132428 -189531925 - LTR16C LTR ERVL 0 491 73 254 159 0 0 chr1 53132552 53132596 -189531757 - Charlie8 DNA MER1_type -1016 1401 1358 387 237 75 75 chr1 53132758 53132931 -189531422 - Charlie8 DNA MER1_type -2156 261 89 653 197 0 16 chr1 53132945 53133072 -189531281 + FLAM_C SINE Alu 5 129 -4 1519 216 117 10 chr1 53133076 53133487 -189530866 + MLT1C LTR MaLR 6 460 -7 202 194 15 60 chr1 53133612 53133679 -189530674 - L2 LINE L2 -181 3091 3028 532 301 117 11 chr1 53133742 53134024 -189530329 - L2 LINE L2 -781 2533 2222 184 284 112 15 chr1 53134024 53134158 -189530195 - L2 LINE L2 -1209 2105 1959 183 346 168 9 chr1 53134904 53135011 -189529342 - MIR SINE MIR -17 245 122 413 241 62 67 chr1 53135027 53135249 -189529104 - MIR SINE MIR -29 233 16 283 328 37 22 chr1 53135541 53135675 -189528678 + MIR SINE MIR 12 147 -61 651 169 0 0 chr1 53135744 53135868 -189528485 + (CAT)n Simple_repeat Simple_repeat 2 125 0 486 50 0 0 chr1 53135973 53136033 -189528320 + L1P2 LINE L1 5652 5711 -444 376 325 61 29 chr1 53136951 53137197 -189527156 - L2 LINE L2 -18 3254 3001 691 284 60 16 chr1 53137335 53137585 -189526768 - MIR SINE MIR 0 262 2 256 329 179 23 chr1 53137975 53138750 -189525603 - L2 LINE L2 -219 3053 2109 994 253 151 8 chr1 53138780 53139163 -189525190 - L2 LINE L2 0 3313 2876 648 204 95 0 chr1 53139252 53139389 -189524964 + MIR SINE MIR 85 234 -28 2368 56 0 0 chr1 53139398 53139718 -189524635 - AluY SINE Alu 0 320 1 215 77 0 26 chr1 53139718 53139757 -189524596 + (TTA)n Simple_repeat Simple_repeat 3 40 0 216 289 44 74 chr1 53139765 53139900 -189524453 + L2 LINE L2 3141 3271 -1 550 255 110 0 chr1 53140337 53140482 -189523871 - MIR SINE MIR -81 181 21 872 269 42 0 chr1 53140757 53140973 -189523380 + MIR SINE MIR 38 262 0 1255 221 61 64 chr1 53141092 53141436 -189522917 + LTR16C LTR ERVL 149 491 0 290 307 61 0 chr1 53141490 53141604 -189522749 - L2 LINE L2 -286 2986 2866 432 0 0 0 chr1 53142049 53142097 -189522256 + (CA)n Simple_repeat Simple_repeat 2 49 0 222 404 46 43 chr1 53142144 53142424 -189521929 - L2 LINE L2 -2 3270 2990 314 202 125 10 chr1 53143011 53143115 -189521238 + MIR SINE MIR 53 168 -94 218 283 18 44 chr1 53143337 53143450 -189520903 - MIR SINE MIR -64 144 35 337 293 38 19 chr1 53143952 53144058 -189520295 + MIR3 SINE MIR 12 119 -89 222 320 214 35 chr1 53144107 53144448 -189519905 + L2 LINE L2 2830 3231 -41 1044 134 18 0 chr1 53144501 53144665 -189519688 + MLT2B2 LTR ERVL 1 167 -348 259 242 195 0 chr1 53144815 53144943 -189519410 - L2 LINE L2 -1222 2092 1940 316 221 76 137 chr1 53146481 53146612 -189517741 - HAL1 LINE L1 -2324 183 61 740 337 79 6 chr1 53146822 53147217 -189517136 + LTR16A LTR ERVL 22 457 0 197 232 205 71 chr1 53147554 53147666 -189516687 - MIR SINE MIR -62 146 20 2736 207 57 71 chr1 53148211 53148953 -189515400 - L1MC5 LINE L1 -37 7924 7173 261 0 0 0 chr1 53148953 53148982 -189515371 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2736 207 57 71 chr1 53148982 53148999 -189515354 - L1MC5 LINE L1 -788 7173 7157 1611 140 4 4 chr1 53148999 53149249 -189515104 - AluJb SINE Alu -62 250 1 2736 207 57 71 chr1 53149249 53149504 -189514849 - L1MC5 LINE L1 -804 7157 6923 988 174 38 68 chr1 53150523 53150758 -189513595 - L1MC5 LINE L1 -1051 6910 6683 461 217 43 108 chr1 53151011 53151269 -189513084 - L1ME3A LINE L1 -219 5951 5711 2074 172 70 14 chr1 53151368 53151810 -189512543 - Charlie1b DNA MER1_type -56 467 1 897 214 13 71 chr1 53151810 53152048 -189512305 - L1ME3A LINE L1 -508 5656 5433 237 304 133 81 chr1 53152299 53152645 -189511708 + L2 LINE L2 2902 3265 -7 199 305 0 34 chr1 53152630 53152689 -189511664 - MIR3 SINE MIR -48 160 104 * 465 66 0 0 chr1 53153821 53153882 -189510471 + (CAT)n Simple_repeat Simple_repeat 3 63 0 356 305 79 30 chr1 53153899 53154063 -189510290 - MIR SINE MIR -12 250 79 202 278 90 98 chr1 53154683 53154816 -189509537 - L2 LINE L2 -7 3265 3134 826 288 58 0 chr1 53155426 53155669 -189508684 + MIR SINE MIR 2 258 -4 3064 45 16 2 chr1 53155839 53156315 -189508038 - L1P2 LINE L1 -515 5639 5157 309 350 32 32 chr1 53156380 53156537 -189507816 + MER5B DNA MER1_type 6 162 -16 427 287 25 0 chr1 53156654 53156776 -189507577 + MIR SINE MIR 63 187 -75 215 308 167 0 chr1 53157385 53157505 -189506848 + MIR SINE MIR 77 216 -46 219 167 83 0 chr1 53157556 53157604 -189506749 + L2 LINE L2 3183 3234 -79 250 302 72 29 chr1 53157622 53157761 -189506592 - MIR SINE MIR -14 248 104 483 276 138 19 chr1 53158367 53158577 -189505776 + MIR SINE MIR 22 256 -6 402 278 105 31 chr1 53158875 53159037 -189505316 + MIR3 SINE MIR 35 208 0 372 248 40 10 chr1 53159365 53159466 -189504887 + MIR SINE MIR 85 188 -74 189 368 13 13 chr1 53159676 53159752 -189504601 - L2 LINE L2 0 3313 3238 413 291 77 36 chr1 53159948 53160168 -189504185 + L2 LINE L2 2615 2843 -471 1525 209 48 20 chr1 53160351 53160709 -189503644 - MLT1B LTR MaLR -2 388 21 733 246 34 6 chr1 53160846 53161021 -189503332 - MIR SINE MIR -77 185 6 270 269 234 14 chr1 53161099 53161244 -189503109 - MIR SINE MIR -56 206 30 213 250 0 0 chr1 53161244 53161292 -189503061 + (TAA)n Simple_repeat Simple_repeat 2 49 0 2257 59 3 39 chr1 53161371 53161677 -189502676 - AluY SINE Alu -16 295 1 446 276 20 0 chr1 53162191 53162289 -189502064 - MIR SINE MIR -82 126 27 192 287 13 107 chr1 53162586 53162736 -189501617 + MIR SINE MIR 82 217 -45 790 246 273 9 chr1 53162800 53163145 -189501208 - MLT1J2 LTR MaLR 0 450 15 342 339 73 12 chr1 53163171 53163336 -189501017 - MIR SINE MIR -68 194 20 205 260 120 0 chr1 53163383 53163433 -189500920 - L2 LINE L2 -1 3312 3257 278 351 180 25 chr1 53164695 53165057 -189499296 - L2 LINE L2 0 3272 2855 1864 159 3 0 chr1 53165072 53165374 -189498979 - AluSx SINE Alu -9 303 1 220 253 145 0 chr1 53165507 53165590 -189498763 + L3 LINE CR1 1429 1523 -54 297 302 86 9 chr1 53165601 53165717 -189498636 + MIR3 SINE MIR 83 207 -1 464 329 29 6 chr1 53165726 53165896 -189498457 + MIR3 SINE MIR 23 196 -12 642 236 83 13 chr1 53166534 53166691 -189497662 - MIR3 SINE MIR -3 205 38 487 285 49 6 chr1 53166948 53167127 -189497226 - MIR3 SINE MIR -36 172 27 286 312 21 43 chr1 53167434 53167575 -189496778 - MIR3 SINE MIR -3 205 68 219 354 37 56 chr1 53167567 53167728 -189496625 - L2 LINE L2 -38 3234 3077 * 229 302 72 58 chr1 53167880 53168019 -189496334 + MIR3 SINE MIR 7 147 -61 277 268 32 98 chr1 53168411 53168534 -189495819 - MIR SINE MIR -56 206 92 184 171 29 0 chr1 53168984 53169019 -189495334 + L2 LINE L2 2717 2752 -562 304 291 64 104 chr1 53169387 53169630 -189494723 + L2 LINE L2 3001 3233 -39 1089 231 55 28 chr1 53169630 53169885 -189494468 + MIR SINE MIR 1 262 0 345 289 11 11 chr1 53170497 53170587 -189493766 + MIR SINE MIR 58 147 -61 261 291 118 47 chr1 53170583 53170710 -189493643 - MER5A DNA MER1_type -40 149 14 * 33 43 0 0 chr1 53170911 53170958 -189493395 + AT_rich Low_complexity Low_complexity 1 47 0 1120 136 108 23 chr1 53171567 53171781 -189492572 - MER46A DNA MER2_type -4 232 1 674 229 159 13 chr1 53172339 53172496 -189491857 - MER5A DNA MER1_type -1 188 9 356 256 11 0 chr1 53172522 53172612 -189491741 + MIR3 SINE MIR 109 199 -9 2300 210 11 5 chr1 53172612 53173113 -189491240 + L1ME1 LINE L1 5650 6161 -5 288 239 345 0 chr1 53173141 53173254 -189491099 - MIR SINE MIR 0 262 111 503 226 31 45 chr1 53173718 53173878 -189490475 - MIR3 SINE MIR -62 146 9 210 314 12 0 chr1 53175480 53175566 -189488787 + L2 LINE L2 2911 2997 -275 347 277 40 0 chr1 53175831 53175932 -189488421 - MER91C DNA MER1_type -35 105 1 843 278 64 68 chr1 53175950 53176418 -189487935 - L1MC4a LINE L1 -94 6027 5562 1811 154 30 0 chr1 53176497 53176795 -189487558 + AluJb SINE Alu 1 307 -5 239 79 26 0 chr1 53176795 53176833 -189487520 + (GA)n Simple_repeat Simple_repeat 1 39 0 961 243 28 0 chr1 53176986 53177200 -189487153 + MER58A DNA MER1_type 1 220 -4 480 298 103 13 chr1 53177200 53177502 -189486851 - L2 LINE L2 -527 2787 2459 25 31 0 0 chr1 53177761 53177793 -189486560 + AT_rich Low_complexity Low_complexity 1 32 0 288 0 0 0 chr1 53177793 53177825 -189486528 + (TG)n Simple_repeat Simple_repeat 1 32 0 2086 127 0 3 chr1 53177826 53178134 -189486219 - AluSx SINE Alu -5 307 1 2338 71 0 3 chr1 53178261 53178557 -189485796 - AluY SINE Alu -16 295 1 221 202 0 85 chr1 53178966 53179060 -189485293 + GA-rich Low_complexity Low_complexity 2 87 0 545 253 28 60 chr1 53179125 53179307 -189485046 - MIR SINE MIR -67 195 20 514 242 126 48 chr1 53179983 53180214 -189484139 + MIR SINE MIR 13 261 -1 222 224 0 129 chr1 53180422 53180474 -189483879 - MIR SINE MIR -17 245 207 1203 255 75 21 chr1 53180474 53180898 -189483455 - MLT1J2 LTR MaLR -1 449 3 222 224 0 129 chr1 53180898 53180930 -189483423 - MIR SINE MIR -55 207 172 188 146 0 42 chr1 53180945 53180993 -189483360 + (GGGAGA)n Simple_repeat Simple_repeat 5 50 0 1056 222 53 0 chr1 53181229 53181454 -189482899 - MIR SINE MIR -3 259 23 449 302 87 35 chr1 53181467 53181642 -189482711 - MIR SINE MIR -26 236 53 415 261 115 67 chr1 53181927 53182024 -189482329 + MIR SINE MIR 26 117 -145 816 48 0 0 chr1 53182024 53182129 -189482224 + (TTCC)n Simple_repeat Simple_repeat 4 108 0 1670 158 13 20 chr1 53182134 53182437 -189481916 - AluSx SINE Alu -11 301 1 415 261 115 67 chr1 53182437 53182496 -189481857 + MIR SINE MIR 120 175 -87 351 96 0 0 chr1 53182496 53182548 -189481805 + (TG)n Simple_repeat Simple_repeat 2 53 0 415 261 115 67 chr1 53182548 53182604 -189481749 + MIR SINE MIR 175 256 -6 262 221 189 25 chr1 53182703 53182825 -189481528 - MIR3 SINE MIR -56 152 11 281 319 48 24 chr1 53183290 53183456 -189480897 + L2 LINE L2 2615 2784 -530 4848 60 2 0 chr1 53183456 53184052 -189480301 - L1PA6 LINE L1 -1 6153 5557 426 231 0 0 chr1 53185016 53185107 -189479246 + MIR SINE MIR 52 142 -120 478 222 87 8 chr1 53185472 53185598 -189478755 - MIR SINE MIR -17 245 110 229 192 55 41 chr1 53185586 53185659 -189478694 - L2 LINE L2 -182 3090 3017 * 1324 214 128 27 chr1 53186451 53186825 -189477528 - MLT1J2 LTR MaLR -37 413 2 201 184 0 0 chr1 53187002 53187040 -189477313 + L2 LINE L2 3182 3219 -94 809 165 30 6 chr1 53187121 53187285 -189477068 - MIR SINE MIR -22 240 73 192 158 0 26 chr1 53187272 53187310 -189477043 + L2 LINE L2 3270 3306 -7 * 276 254 42 28 chr1 53187985 53188056 -189476297 + MIR3 SINE MIR 100 171 -37 393 200 0 0 chr1 53188089 53188164 -189476189 - L2 LINE L2 0 3313 3239 297 223 131 62 chr1 53188169 53188299 -189476054 + L2 LINE L2 3175 3313 0 2554 54 0 7 chr1 53188538 53188836 -189475517 + AluY SINE Alu 1 296 -15 274 270 36 45 chr1 53188848 53188959 -189475394 + L1MC4 LINE L1 7361 7470 -572 497 297 91 0 chr1 53189263 53189438 -189474915 - MIR SINE MIR -71 191 1 286 250 0 0 chr1 53189461 53189521 -189474832 - L2 LINE L2 -13 3259 3200 207 152 0 0 chr1 53190835 53190881 -189473472 + GA-rich Low_complexity Low_complexity 2 47 0 3563 157 81 35 chr1 53191381 53192131 -189472222 + LTR1 LTR ERV1 1 785 0 2596 66 0 0 chr1 53192180 53192481 -189471872 - AluY SINE Alu -10 301 1 1710 159 7 53 chr1 53192851 53193153 -189471200 + AluJb SINE Alu 2 289 -23 282 309 98 8 chr1 53193236 53193359 -189470994 - L2 LINE L2 0 3313 3180 270 360 0 0 chr1 53193381 53193467 -189470886 - L3 LINE CR1 -104 1473 1388 1018 303 94 30 chr1 53193614 53194049 -189470304 - MLT1J LTR MaLR -48 463 1 545 223 9 0 chr1 53194149 53194261 -189470092 - MER63 DNA MER1_type 0 1062 950 2345 65 0 0 chr1 53194261 53194536 -189469817 + AluY SINE Alu 21 295 -16 935 189 84 0 chr1 53194603 53194830 -189469523 - MER63 DNA MER1_type -815 246 1 840 245 32 53 chr1 53194975 53195354 -189468999 - HAL1 LINE L1 -1301 1206 836 774 225 107 12 chr1 53195402 53195565 -189468788 + L1MC4 LINE L1 6824 7021 -1021 324 0 0 0 chr1 53195565 53195601 -189468752 + (CA)n Simple_repeat Simple_repeat 1 36 0 774 225 107 12 chr1 53195601 53195690 -189468663 + L1MC4 LINE L1 7021 7100 -942 3002 149 6 14 chr1 53195691 53196181 -189468172 + MER54B LTR ERVL 1 486 -307 * 9187 110 3 0 chr1 53196167 53197511 -189466842 + Tigger1 DNA MER2_type 1071 2418 0 4056 161 31 40 chr1 53198772 53199543 -189464810 + MER54B LTR ERVL 1 764 -29 1130 67 8 0 chr1 53199543 53199677 -189464676 + AluSq/x SINE Alu 1 135 -178 26278 145 13 23 chr1 53199677 53201292 -189463061 + L1PA10 LINE L1 3 1632 -4878 2372 93 0 10 chr1 53201292 53201592 -189462761 + AluY SINE Alu 1 297 -14 26278 145 13 23 chr1 53201592 53206545 -189457808 + L1PA10 LINE L1 1632 6510 0 1112 109 27 0 chr1 53206587 53206734 -189457619 + AluSg/x SINE Alu 149 299 -13 2437 182 135 5 chr1 53206769 53207362 -189456991 + L1MC4 LINE L1 7097 7766 -276 368 149 27 0 chr1 53207381 53207455 -189456898 + CT-rich Low_complexity Low_complexity 5 80 0 790 45 27 0 chr1 53207458 53207568 -189456785 + (TTTC)n Simple_repeat Simple_repeat 2 114 0 1617 181 4 11 chr1 53207569 53207850 -189456503 - AluJb SINE Alu -33 279 1 1441 233 247 35 chr1 53208000 53208544 -189455809 - HAL1 LINE L1 -1679 828 108 1115 109 24 57 chr1 53208544 53208754 -189455599 + L1MA9 LINE L1 6110 6312 0 1441 233 247 35 chr1 53208754 53208892 -189455461 - HAL1 LINE L1 -2399 108 1 479 203 234 8 chr1 53209896 53210024 -189454329 + MIR SINE MIR 94 250 -12 328 203 54 0 chr1 53211158 53211232 -189453121 + MIR SINE MIR 54 131 -131 232 288 45 0 chr1 53211337 53211403 -189452950 - MIR SINE MIR -86 122 54 2560 87 0 0 chr1 53211448 53211757 -189452596 - AluSx SINE Alu -3 309 1 1400 167 0 75 chr1 53211826 53212119 -189452234 + AluJo SINE Alu 32 302 -10 615 268 68 29 chr1 53212533 53212738 -189451615 + MIR SINE MIR 4 216 -46 588 292 83 0 chr1 53212972 53213188 -189451165 - MIR SINE MIR -6 256 23 765 168 15 0 chr1 53213258 53213389 -189450964 - FLAM_C SINE Alu 0 133 1 310 324 85 65 chr1 53213598 53213725 -189450628 + L2 LINE L2 2510 2633 -639 2399 97 3 0 chr1 53213725 53214025 -189450328 + AluSp SINE Alu 1 301 -12 310 324 85 65 chr1 53214025 53214659 -189449694 + L2 LINE L2 2633 3268 -4 268 330 48 0 chr1 53214727 53214830 -189449523 + L2 LINE L2 3156 3263 -9 526 279 52 0 chr1 53214965 53215119 -189449234 - MIR SINE MIR -78 184 23 240 364 49 0 chr1 53215229 53215372 -189448981 + L2 LINE L2 2013 2162 -1152 761 263 82 8 chr1 53215523 53215766 -189448587 - MIR SINE MIR -1 261 1 190 300 69 77 chr1 53215766 53215896 -189448457 + L2 LINE L2 3032 3160 -112 419 340 62 5 chr1 53215936 53216130 -189448223 - MIR SINE MIR -49 213 9 301 161 49 0 chr1 53216752 53216821 -189447532 - MIR SINE MIR -62 146 94 495 242 40 0 chr1 53217539 53217663 -189446690 - MIR SINE MIR 0 262 134 263 307 30 10 chr1 53218000 53218101 -189446252 + MIR SINE MIR 59 161 -101 333 0 0 0 chr1 53218570 53218607 -189445746 + (TG)n Simple_repeat Simple_repeat 2 38 0 538 307 116 51 chr1 53219148 53219712 -189444641 + L1ME4a LINE L1 4234 4838 -1308 225 270 130 0 chr1 53219749 53219864 -189444489 + L1P LINE L1 4886 5015 -1131 753 269 187 12 chr1 53220071 53220627 -189443726 + L1ME4a LINE L1 5254 5825 -296 218 240 20 0 chr1 53220929 53220979 -189443374 + L2 LINE L2 3263 3313 0 216 390 65 0 chr1 53221168 53221322 -189443031 + MIR SINE MIR 86 249 -13 313 333 35 21 chr1 53221680 53221821 -189442532 + MIR3 SINE MIR 13 155 -53 21 36 0 0 chr1 53225893 53225921 -189438432 + GC_rich Low_complexity Low_complexity 1 28 0 273 208 0 0 chr1 53227970 53228047 -189436306 + (CGG)n Simple_repeat Simple_repeat 3 79 0 240 35 0 0 chr1 53230339 53230368 -189433985 + (CCG)n Simple_repeat Simple_repeat 1 29 0 206 116 23 0 chr1 53231434 53231477 -189432876 + (TA)n Simple_repeat Simple_repeat 1 44 0 229 300 14 36 chr1 53232855 53232995 -189431358 + GA-rich Low_complexity Low_complexity 4 140 0 253 218 7 56 chr1 53233300 53233415 -189430938 - MIR SINE MIR -64 198 92 311 288 0 0 chr1 53234408 53234493 -189429860 - L2 LINE L2 0 3313 3229 242 284 155 0 chr1 53234530 53234646 -189429707 + MIR SINE MIR 113 246 -16 348 268 24 0 chr1 53235629 53235711 -189428642 + MER69 DNA AcHobo 1 84 -93 2312 95 16 0 chr1 53235775 53236080 -189428273 + AluY SINE Alu 2 311 0 1372 337 41 70 chr1 53236125 53236567 -189427786 - MLT1H1 LTR MaLR 0 555 127 543 292 45 6 chr1 53236681 53236859 -189427494 - MLT1K LTR MaLR -87 501 317 357 274 100 70 chr1 53237202 53237531 -189426822 - L1MC4 LINE L1 0 8042 7704 258 281 177 0 chr1 53237585 53237681 -189426672 + LTR16C LTR ERVL 1 113 -378 1011 226 53 12 chr1 53237704 53237947 -189426406 + MER97a DNA MER1_type? 5 257 -637 2426 207 12 23 chr1 53238018 53238534 -189425819 - L1ME1 LINE L1 -20 6146 5637 8278 180 37 52 chr1 53238562 53238738 -189425615 - L1MB8 LINE L1 -208 5970 5793 216 67 0 0 chr1 53238738 53238768 -189425585 + (TA)n Simple_repeat Simple_repeat 1 30 0 8278 180 37 52 chr1 53238768 53239013 -189425340 - L1MB8 LINE L1 -385 5793 5546 1848 167 3 16 chr1 53239013 53239325 -189425028 - AluJo SINE Alu -2 310 3 8278 180 37 52 chr1 53239325 53239931 -189424422 - L1MB8 LINE L1 -632 5546 4933 930 107 15 0 chr1 53239931 53240062 -189424291 + L1MA2 LINE L1 6172 6304 0 8278 180 37 52 chr1 53240062 53241186 -189423167 - L1MB8 LINE L1 -1245 4933 3794 279 0 0 0 chr1 53241186 53241217 -189423136 + (TA)n Simple_repeat Simple_repeat 1 31 0 2256 122 3 0 chr1 53241220 53241531 -189422822 - AluSx SINE Alu 0 312 1 8278 180 37 52 chr1 53241531 53241941 -189422412 - L1MB8 LINE L1 -2386 3792 3450 2138 124 0 16 chr1 53242028 53242334 -189422019 - AluSx SINE Alu -11 301 1 225 94 0 0 chr1 53242340 53242372 -189421981 + (T)n Simple_repeat Simple_repeat 1 32 0 538 276 17 7 chr1 53242385 53242667 -189421686 - L1M4 LINE L1 -1779 4367 4014 517 324 20 32 chr1 53242665 53242912 -189421441 - L1MDa LINE L1 -6276 264 21 * 1897 212 24 10 chr1 53242913 53243323 -189421030 + MER97c DNA MER1_type? 260 675 -415 1348 157 92 61 chr1 53244242 53244536 -189419817 - AluSp SINE Alu 0 303 1 1351 149 0 14 chr1 53244589 53244803 -189419550 + AluSx SINE Alu 1 211 -101 377 294 141 18 chr1 53245196 53245359 -189418994 - L2 LINE L2 -10 3262 3080 210 333 60 12 chr1 53245438 53245522 -189418831 + MIR3 SINE MIR 69 156 -52 277 314 0 14 chr1 53245810 53245880 -189418473 - L2 LINE L2 -47 3225 3157 379 301 115 6 chr1 53246003 53246159 -189418194 - L2 LINE L2 -1357 1957 1785 274 362 102 17 chr1 53246233 53246410 -189417943 - MIR SINE MIR -50 212 21 314 284 162 20 chr1 53246629 53246986 -189417367 - L2 LINE L2 -10 3262 2622 621 265 53 25 chr1 53247204 53247435 -189416918 - MIR SINE MIR -13 249 14 207 0 0 0 chr1 53248382 53248405 -189415948 + (A)n Simple_repeat Simple_repeat 1 23 0 468 287 99 10 chr1 53248931 53249133 -189415220 + L3 LINE CR1 1136 1355 -222 196 360 99 19 chr1 53249106 53249267 -189415086 + MIR3 SINE MIR 8 181 -27 * 336 393 47 0 chr1 53249660 53249810 -189414543 + L2 LINE L2 2904 3060 -212 636 269 67 29 chr1 53249905 53250113 -189414240 + MIR SINE MIR 28 243 -19 184 256 49 37 chr1 53250286 53250368 -189413985 - MIR3 SINE MIR -124 84 2 745 267 5 29 chr1 53251298 53251508 -189412845 - MIR SINE MIR -56 206 2 839 282 42 28 chr1 53251693 53252048 -189412305 + L1ME4a LINE L1 5567 5926 -195 403 292 83 6 chr1 53252187 53252355 -189411998 + MIR SINE MIR 80 260 -2 548 295 175 14 chr1 53253133 53253482 -189410871 + L2 LINE L2 2864 3268 -4 196 350 50 0 chr1 53253689 53253769 -189410584 + L2 LINE L2 2556 2639 -675 1045 256 70 0 chr1 53253770 53254055 -189410298 + MLT1A1 LTR MaLR 1 305 -60 834 182 0 0 chr1 53254056 53254188 -189410165 + FLAM_C SINE Alu 2 133 -10 2225 113 3 13 chr1 53254193 53254503 -189409850 + AluSp SINE Alu 1 307 -6 499 218 0 0 chr1 53254504 53254628 -189409725 + L1MA7 LINE L1 6168 6291 0 12771 157 32 19 chr1 53254777 53257230 -189407123 - L1PA13 LINE L1 0 6163 3661 183 42 0 0 chr1 53257230 53257254 -189407099 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 12771 157 32 19 chr1 53257254 53257888 -189406465 - L1PA13 LINE L1 -2502 3661 3037 2142 146 9 3 chr1 53257905 53258234 -189406119 - Tigger1 DNA MER2_type -26 2392 2062 2156 117 7 0 chr1 53259030 53259328 -189405025 + AluSx SINE Alu 1 300 -12 201 211 0 0 chr1 53259734 53259786 -189404567 + GA-rich Low_complexity Low_complexity 3 54 0 25 0 0 0 chr1 53259968 53259993 -189404360 + AT_rich Low_complexity Low_complexity 1 25 0 916 265 126 10 chr1 53260197 53260491 -189403862 + LTR16C LTR ERVL 152 479 -12 2451 79 0 0 chr1 53260521 53260826 -189403527 - AluY SINE Alu -6 305 1 409 334 45 7 chr1 53260885 53261231 -189403122 - L1MC5 LINE L1 -414 7394 7168 1096 180 73 90 chr1 53261231 53261587 -189402766 + MLT1D LTR MaLR 1 350 -155 1275 160 70 47 chr1 53261589 53261933 -189402420 + MSTD LTR MaLR 3 396 0 769 172 13 45 chr1 53261934 53262091 -189402262 + MLT1D LTR MaLR 347 498 -7 469 235 79 40 chr1 53262101 53262386 -189401967 - L1MC4 LINE L1 -749 7212 6962 797 191 0 0 chr1 53262403 53262529 -189401824 + FLAM_C SINE Alu 2 127 -6 316 256 12 12 chr1 53262541 53262623 -189401730 + MIR SINE MIR 83 164 -98 2230 101 3 0 chr1 53262624 53262911 -189401442 + AluSg SINE Alu 1 288 -22 583 235 31 6 chr1 53262942 53263104 -189401249 + L1M4 LINE L1 2434 2599 -3547 2260 135 24 5 chr1 53263104 53263474 -189400879 + L1MB3 LINE L1 5807 6183 0 233 191 0 0 chr1 53263497 53263539 -189400814 - MIR SINE MIR -21 241 200 265 246 43 0 chr1 53263645 53263714 -189400639 - MIR SINE MIR -56 152 81 23 0 0 0 chr1 53263893 53263916 -189400437 + AT_rich Low_complexity Low_complexity 1 23 0 2211 210 55 8 chr1 53263944 53264454 -189399899 + L1ME1 LINE L1 5379 5912 -252 2156 168 52 66 chr1 53264454 53264954 -189399399 - LTR54 LTR ERV1 0 510 18 1629 179 11 21 chr1 53264954 53265239 -189399114 + AluJo SINE Alu 1 282 -30 687 219 214 0 chr1 53265278 53265449 -189398904 + L1ME1 LINE L1 5907 6132 -34 2201 97 7 10 chr1 53265449 53265747 -189398606 + AluSc SINE Alu 1 297 -12 687 219 214 0 chr1 53265747 53265785 -189398568 + L1ME1 LINE L1 6132 6161 -5 1163 254 51 27 chr1 53265818 53266192 -189398161 + L1MC4a LINE L1 6545 6927 -881 193 169 68 34 chr1 53266216 53266275 -189398078 - L2 LINE L2 -93 3220 3160 1245 263 57 41 chr1 53266326 53267089 -189397264 + L1ME LINE L1 784 1565 -4515 28 48 0 0 chr1 53267119 53267161 -189397192 + AT_rich Low_complexity Low_complexity 1 42 0 8177 147 16 16 chr1 53267372 53268885 -189395468 + L1P4 LINE L1 3905 5415 -748 2296 110 0 0 chr1 53268885 53269186 -189395167 + AluSx SINE Alu 1 301 -11 8177 147 16 16 chr1 53269186 53269523 -189394830 + L1P4 LINE L1 5415 5751 -412 187 233 121 35 chr1 53320353 53320469 -189343884 - L3b LINE CR1 -133 1450 1325 197 271 128 38 chr1 53321882 53322015 -189342338 - MIR SINE MIR -111 151 7 493 273 101 0 chr1 53322460 53322648 -189341705 - MIR SINE MIR -58 204 1 204 211 0 0 chr1 53322754 53322792 -189341561 - L2 LINE L2 -24 3248 3211 217 219 206 0 chr1 53324156 53324229 -189340124 + L2 LINE L2 2985 3072 -200 357 24 0 0 chr1 53324487 53324529 -189339824 + (TG)n Simple_repeat Simple_repeat 2 43 0 516 266 63 19 chr1 53325564 53325722 -189338631 + MIR SINE MIR 28 192 -70 270 347 10 29 chr1 53325912 53326139 -189338214 + CT-rich Low_complexity Low_complexity 1 222 0 326 311 6 44 chr1 53326280 53326463 -189337890 + CT-rich Low_complexity Low_complexity 1 176 0 201 331 8 46 chr1 53326424 53326554 -189337799 + C-rich Low_complexity Low_complexity 2 126 0 * 526 282 63 5 chr1 53327676 53327828 -189336525 - MIR SINE MIR -44 218 48 2245 108 3 13 chr1 53327828 53328135 -189336218 - AluSp SINE Alu -9 304 1 526 282 63 5 chr1 53328135 53328180 -189336173 - MIR SINE MIR -214 48 7 2352 233 53 29 chr1 53328194 53328905 -189335448 + L1ME3A LINE L1 5439 6162 -8 279 299 0 11 chr1 53328960 53329047 -189335306 + MIR SINE MIR 98 183 -79 540 278 67 24 chr1 53329087 53329296 -189335057 - MIR SINE MIR -2 260 43 298 301 96 32 chr1 53329394 53329550 -189334803 + MIR3 SINE MIR 36 201 -7 248 274 169 24 chr1 53329720 53329844 -189334509 + L2 LINE L2 3126 3267 -5 3646 157 16 10 chr1 53330432 53331289 -189333064 - L1P4 LINE L1 -370 5796 4926 3085 205 34 1 chr1 53331287 53331828 -189332525 + L1 LINE L1 4188 4757 -1389 * 594 41 0 0 chr1 53331828 53331901 -189332452 + (CTATA)n Simple_repeat Simple_repeat 5 77 0 3085 205 34 1 chr1 53331901 53332027 -189332326 + L1 LINE L1 4757 4877 -1269 612 284 100 61 chr1 53332055 53332565 -189331788 + L1M4 LINE L1 3152 3681 -2465 841 160 0 0 chr1 53332685 53332810 -189331543 - MER46A DNA MER2_type -111 125 1 452 270 165 30 chr1 53332947 53333147 -189331206 + Charlie8 DNA MER1_type 50 276 -2141 21 0 0 0 chr1 53333503 53333524 -189330829 + AT_rich Low_complexity Low_complexity 1 21 0 296 252 149 32 chr1 53335331 53335566 -189328787 + L2 LINE L2 2772 3022 -250 279 122 0 0 chr1 53335957 53336006 -189328347 + (GA)n Simple_repeat Simple_repeat 2 50 0 282 303 51 49 chr1 53336243 53336490 -189327863 + MIR SINE MIR 3 248 -14 947 189 80 15 chr1 53336858 53337059 -189327294 - MER58A DNA MER1_type 0 224 11 205 314 17 42 chr1 53337840 53337958 -189326395 + MIR SINE MIR 75 189 -73 556 312 54 14 chr1 53337971 53338210 -189326143 - MIR SINE MIR 0 262 19 1440 192 58 10 chr1 53338501 53338793 -189325560 - AluJo SINE Alu -6 306 1 612 259 146 0 chr1 53338817 53338975 -189325378 + MER5A DNA MER1_type 9 189 0 338 220 19 14 chr1 53339001 53339109 -189325244 + MIR SINE MIR 19 128 -80 362 275 113 7 chr1 53339220 53339362 -189324991 + MIR SINE MIR 100 256 -6 456 19 0 0 chr1 53340128 53340181 -189324172 + (CA)n Simple_repeat Simple_repeat 1 53 0 525 288 71 10 chr1 53341645 53341843 -189322510 + L3 LINE CR1 1349 1558 -19 196 305 114 0 chr1 53341934 53342039 -189322314 - MIR SINE MIR -118 144 28 193 327 132 31 chr1 53342195 53342452 -189321901 - L2 LINE L2 -4 3268 2986 672 205 13 13 chr1 53342553 53342709 -189321644 - AluJb SINE Alu -15 297 142 192 344 61 15 chr1 53342932 53343063 -189321290 + MIR SINE MIR 126 262 0 251 328 46 23 chr1 53343089 53343220 -189321133 - L2 LINE L2 0 3272 3139 218 246 0 18 chr1 53343215 53343272 -189321081 - L2 LINE L2 0 3272 3217 * 1948 150 0 3 chr1 53343421 53343708 -189320645 - AluSx SINE Alu -26 286 1 183 241 7 149 chr1 53343933 53344074 -189320279 + L2 LINE L2 2937 3057 -215 251 236 85 38 chr1 53344138 53344244 -189320109 + MIR3 SINE MIR 88 198 -10 2008 139 3 0 chr1 53344370 53344658 -189319695 + AluSx SINE Alu 2 290 -22 343 256 135 15 chr1 53344846 53344979 -189319374 + MIR SINE MIR 114 262 0 3976 68 2 0 chr1 53346382 53346869 -189317484 + HERVL LTR ERVL 139 626 -5028 14033 65 14 1 chr1 53346894 53348725 -189315628 + HERVL LTR ERVL 3545 5445 -209 339 138 0 52 chr1 53348927 53348985 -189315368 + Tigger5 DNA MER2_type 1 55 -2268 526 165 12 0 chr1 53348995 53349080 -189315273 + Tigger5 DNA MER2_type 2237 2322 -1 568 236 51 18 chr1 53349262 53349467 -189314886 + MIR SINE MIR 45 256 -6 191 298 20 86 chr1 53349672 53349823 -189314530 - MIR SINE MIR -50 212 72 195 42 0 0 chr1 53349983 53350007 -189314346 + (TG)n Simple_repeat Simple_repeat 1 24 0 810 55 0 9 chr1 53350775 53350885 -189313468 + L1PA3 LINE L1 5919 6027 -128 183 80 0 0 chr1 53353480 53353505 -189310848 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 5987 236 26 8 chr1 53404195 53406042 -189258311 - L1 LINE L1 -1126 5722 3842 921 123 19 0 chr1 53406043 53406205 -189258148 - L1P LINE L1 -2709 3437 3273 2832 104 32 9 chr1 53406209 53406601 -189257752 + MLT2A1 LTR ERVL 1 405 -39 519 31 0 0 chr1 53406601 53406666 -189257687 + (TG)n Simple_repeat Simple_repeat 2 66 0 2832 104 32 9 chr1 53406666 53406707 -189257646 + MLT2A1 LTR ERVL 405 444 0 41568 74 11 1 chr1 53406707 53412306 -189252047 + HERVL-A1 LTR ERVL 1 5654 0 2669 112 26 55 chr1 53412306 53412763 -189251590 + MLT2A1 LTR ERVL 1 444 0 6757 249 45 17 chr1 53412779 53412979 -189251374 - L1 LINE L1 -3268 3580 3387 2287 98 0 0 chr1 53412979 53413274 -189251079 - AluY SINE Alu -16 295 1 6757 249 45 17 chr1 53413274 53415846 -189248507 - L1 LINE L1 -3461 3387 727 440 154 0 99 chr1 53416449 53416540 -189247813 + MER21B LTR ERV1 15 96 -767 479 275 42 21 chr1 53416547 53416689 -189247664 + MER21B LTR ERV1 19 163 -700 1198 269 49 41 chr1 53416697 53417183 -189247170 + MER21B LTR ERV1 317 806 -57 206 255 39 0 chr1 53417793 53417844 -189246509 - L3 LINE CR1 -17 1560 1508 616 218 58 46 chr1 53418071 53418245 -189246108 - MER69A DNA AcHobo 0 177 2 418 290 9 0 chr1 53418301 53418408 -189245945 - MIR SINE MIR -94 168 61 1768 244 41 80 chr1 53418625 53419240 -189245113 + MLT1E LTR MaLR 3 593 0 352 237 31 0 chr1 53419240 53419337 -189245016 + MLT1E-int LTR MaLR 1 100 -1271 283 331 41 41 chr1 53419551 53419696 -189244657 - MIR SINE MIR -7 255 111 280 333 57 0 chr1 53419930 53420053 -189244300 - MIR SINE MIR -56 206 77 205 171 0 0 chr1 53420123 53420164 -189244189 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 1812 134 0 8 chr1 53420490 53420821 -189243532 + AluSq SINE Alu 54 382 0 184 286 0 20 chr1 53420936 53420985 -189243368 + L2 LINE L2 3187 3234 -38 180 0 0 0 chr1 53421322 53421342 -189243011 + (TTA)n Simple_repeat Simple_repeat 2 21 0 419 337 0 0 chr1 53421813 53421911 -189242442 + L2 LINE L2 3158 3255 -17 292 289 58 39 chr1 53422156 53422260 -189242093 - L2 LINE L2 -8 3264 3159 215 264 0 19 chr1 53422318 53422371 -189241982 - MIR SINE MIR -138 124 73 23 54 0 0 chr1 53423085 53423122 -189241231 + AT_rich Low_complexity Low_complexity 1 37 0 413 269 41 0 chr1 53423561 53423706 -189240647 + L1ME LINE L1 5602 5752 -369 26 30 0 0 chr1 53423721 53423754 -189240599 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr1 53424102 53424130 -189240223 + AT_rich Low_complexity Low_complexity 1 28 0 1054 243 90 31 chr1 53424311 53424958 -189239395 + L1M4 LINE L1 2804 3488 -2658 3936 156 9 21 chr1 53424965 53425764 -189238589 + L1P4 LINE L1 4542 5332 -833 2027 134 10 0 chr1 53425764 53426056 -189238297 + AluSx SINE Alu 1 295 -17 3936 156 9 21 chr1 53426056 53426396 -189237957 + L1P4 LINE L1 5332 5675 -490 713 270 20 76 chr1 53426423 53426602 -189237751 + L1MC4a LINE L1 5558 5745 -2063 2351 74 10 16 chr1 53426602 53426912 -189237441 + AluY SINE Alu 1 308 -3 713 270 20 76 chr1 53426912 53427055 -189237298 + L1MC4a LINE L1 5745 5894 -1914 643 258 60 24 chr1 53427055 53427307 -189237046 + MIR SINE MIR 2 262 0 713 270 20 76 chr1 53427307 53427448 -189236905 + L1MC4a LINE L1 5894 5995 -1813 1223 228 8 0 chr1 53427448 53427685 -189236668 + MER8 DNA MER2_type 1 239 0 713 270 20 76 chr1 53427685 53427719 -189236634 + L1MC4a LINE L1 5995 6029 -1779 5615 63 1 14 chr1 53427827 53428569 -189235784 - L1PA8 LINE L1 -8 6164 5432 2265 92 7 3 chr1 53428569 53428864 -189235489 - AluY SINE Alu -15 296 1 24 0 0 0 chr1 53428878 53428902 -189235451 + AT_rich Low_complexity Low_complexity 1 24 0 1828 152 0 14 chr1 53429649 53429946 -189234407 - AluSx SINE Alu -19 293 1 287 302 35 0 chr1 53430232 53430348 -189234005 + MER103 DNA DNA 4 123 -43 363 363 144 17 chr1 53430666 53431077 -189233276 - L2 LINE L2 -12 3301 2839 3206 85 15 2 chr1 53431196 53431667 -189232686 - L1P LINE L1 -1695 4451 3975 * 4448 51 0 12 chr1 53431658 53432251 -189232102 - L1P LINE L1 -4964 1182 597 * 16227 110 5 14 chr1 53432249 53434930 -189229423 - L1P LINE L1 -2167 3979 1325 6527 54 35 2 chr1 53434930 53436343 -189228010 + L1PA7 LINE L1 4743 6184 0 613 332 24 20 chr1 53436365 53436612 -189227741 - MIR SINE MIR -3 259 12 1264 72 0 0 chr1 53436850 53437003 -189227350 + AluY SINE Alu 132 341 0 493 18 0 0 chr1 53437003 53437060 -189227293 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 4022 173 58 0 chr1 53437142 53437405 -189226948 - L1PB4 LINE L1 -98 6058 5812 468 0 0 0 chr1 53437405 53437457 -189226896 + (CA)n Simple_repeat Simple_repeat 2 53 0 4022 173 58 0 chr1 53437457 53438101 -189226252 - L1PB4 LINE L1 -344 5812 5100 502 289 84 32 chr1 53438436 53438626 -189225727 - MIR SINE MIR 0 262 63 521 278 45 45 chr1 53440091 53440267 -189224086 - MIR SINE MIR -55 207 32 180 318 154 27 chr1 53440934 53441044 -189223309 + L2 LINE L2 2933 3056 -216 293 280 110 40 chr1 53441474 53441574 -189222779 - L2 LINE L2 -18 3254 3148 24 32 0 0 chr1 53441722 53441753 -189222600 + AT_rich Low_complexity Low_complexity 1 31 0 430 266 62 90 chr1 53442285 53442547 -189221806 - MIR SINE MIR 0 262 9 1216 157 65 0 chr1 53443074 53443291 -189221062 - L1PA15 LINE L1 -6 6159 5929 21 36 0 0 chr1 53443377 53443405 -189220948 + AT_rich Low_complexity Low_complexity 1 28 0 429 321 84 11 chr1 53443677 53443867 -189220486 - MIR SINE MIR -33 229 26 212 246 18 18 chr1 53443867 53443924 -189220429 - L2 LINE L2 -230 3042 2986 1655 219 28 3 chr1 53443954 53444310 -189220043 + MLT1A1 LTR MaLR 1 365 0 690 230 19 19 chr1 53444343 53444504 -189219849 - LTR33 LTR ERVL -2 519 359 896 276 15 0 chr1 53444613 53444809 -189219544 - LTR33 LTR ERVL -322 199 1 2464 66 3 7 chr1 53444847 53445152 -189219201 - AluY SINE Alu -7 304 1 5775 109 11 16 chr1 53445966 53446850 -189217503 + L1PA16 LINE L1 5254 6134 -32 3412 148 11 13 chr1 53446850 53447378 -189216975 + MER1A DNA MER1_type 1 527 0 5775 109 11 16 chr1 53447378 53447409 -189216944 + L1PA16 LINE L1 6134 6164 -2 1776 258 61 27 chr1 53447540 53448163 -189216190 - L1ME3A LINE L1 -9 6161 5518 322 330 60 78 chr1 53448163 53448445 -189215908 + L2 LINE L2 2996 3272 0 269 386 0 63 chr1 53448452 53448610 -189215743 - MIR3 SINE MIR -45 163 16 242 306 0 0 chr1 53449587 53449659 -189214694 - MIR SINE MIR -28 234 163 * 3796 263 56 19 chr1 53449638 53450981 -189213372 + L2 LINE L2 1818 3211 -102 237 310 0 0 chr1 53451114 53451172 -189213181 + L2 LINE L2 3211 3268 -4 225 0 0 0 chr1 53451314 53451339 -189213014 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3823 84 4 0 chr1 53451342 53451854 -189212499 - L1PA7 LINE L1 -12 6142 5629 14203 86 6 3 chr1 53451854 53454078 -189210275 + L1PA7 LINE L1 3400 5626 -528 308 331 81 6 chr1 53454089 53454249 -189210104 + MIR SINE MIR 75 246 -16 4921 37 3 0 chr1 53454598 53455187 -189209166 - LTR10C LTR ERV1 0 591 1 491 279 18 87 chr1 53455726 53455823 -189208530 + MIR SINE MIR 58 133 -129 2873 6 0 0 chr1 53455823 53456134 -189208219 + AluYa5 SINE Alu 1 311 0 491 279 18 87 chr1 53456134 53456255 -189208098 + MIR SINE MIR 133 261 -1 188 365 47 29 chr1 53456257 53456427 -189207926 + L2 LINE L2 2888 3060 -212 244 219 0 98 chr1 53457223 53457298 -189207055 + L2 LINE L2 3150 3216 -56 621 285 23 65 chr1 53457298 53457478 -189206875 + MIR SINE MIR 3 170 -92 270 0 0 0 chr1 53457478 53457508 -189206845 + (TG)n Simple_repeat Simple_repeat 2 31 0 621 285 23 65 chr1 53457508 53457587 -189206766 + MIR SINE MIR 170 251 -11 210 171 0 0 chr1 53457599 53457640 -189206713 + (CAT)n Simple_repeat Simple_repeat 2 42 0 280 296 17 43 chr1 53457687 53457802 -189206551 + MIR SINE MIR 151 262 0 667 287 22 73 chr1 53458061 53458375 -189205978 + MLT1J LTR MaLR 214 511 0 209 147 0 0 chr1 53458771 53458805 -189205548 + MIR SINE MIR 219 252 -10 500 310 54 52 chr1 53459553 53459993 -189204360 - HERV16 LTR ERVL -548 4448 4019 580 320 65 17 chr1 53460097 53460414 -189203939 - HERV16 LTR ERVL -1359 4334 3969 3414 320 49 38 chr1 53460900 53462545 -189201808 - HERV16 LTR ERVL -1767 3997 2300 1129 217 9 0 chr1 53462545 53462766 -189201587 + MER58A DNA MER1_type 2 224 0 3414 320 49 38 chr1 53462766 53463359 -189200994 - HERV16 LTR ERVL -3464 2300 1715 970 316 76 3 chr1 53463786 53464140 -189200213 - HERV16 LTR ERVL -3723 1273 894 395 237 0 11 chr1 53464231 53464324 -189200029 + HERV16 LTR ERVL 1281 1372 -3624 1080 365 37 10 chr1 53464419 53465102 -189199251 - HERV16 LTR ERVL -4216 780 80 1152 285 76 21 chr1 53465144 53465526 -189198827 - LTR16B LTR ERVL -61 403 1 2037 95 0 0 chr1 53466314 53466578 -189197775 + AluSc SINE Alu 46 309 0 258 250 17 17 chr1 53466674 53466734 -189197619 + MER5A DNA MER1_type 1 60 -129 202 275 211 18 chr1 53466770 53466879 -189197474 + L2 LINE L2 3184 3313 0 803 173 12 37 chr1 53466997 53467159 -189197194 + FRAM SINE Alu 14 171 -5 290 244 29 17 chr1 53467257 53467429 -189196924 + (TATAA)n Simple_repeat Simple_repeat 4 177 0 244 149 211 18 chr1 53467434 53467548 -189196805 - Charlie5 DNA MER1_type -86 2526 2391 5549 62 1 0 chr1 53467553 53468249 -189196104 - L1PA7 LINE L1 -13 6141 5445 1154 280 56 13 chr1 53468692 53469443 -189194910 + L1ME3A LINE L1 4963 5747 -417 1508 237 17 29 chr1 53469636 53469986 -189194367 - MLT1A1 LTR MaLR -19 346 1 717 222 69 66 chr1 53469986 53470274 -189194079 + L1ME3A LINE L1 5778 6066 -104 3366 81 5 5 chr1 53470297 53470741 -189193612 + MLT2A1 LTR ERVL 1 444 0 2261 112 0 6 chr1 53470766 53471078 -189193275 - AluSx SINE Alu -2 310 1 26 0 0 0 chr1 53471124 53471150 -189193203 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 53471221 53471246 -189193107 + AT_rich Low_complexity Low_complexity 1 25 0 354 269 155 31 chr1 53471368 53471561 -189192792 + L1ME LINE L1 5339 5555 -566 2257 163 3 0 chr1 53471961 53472323 -189192030 + THE1B LTR MaLR 2 364 0 287 287 138 0 chr1 53472787 53472881 -189191472 - MIR SINE MIR 0 262 156 397 264 109 0 chr1 53472939 53473049 -189191304 - MIR SINE MIR -105 157 36 300 322 107 7 chr1 53473071 53473220 -189191133 - L2 LINE L2 -1 3312 3149 201 135 122 54 chr1 53474374 53474448 -189189905 + MIR SINE MIR 171 249 -13 574 162 45 9 chr1 53474451 53474562 -189189791 + L1PA15 LINE L1 6046 6160 -5 5892 285 73 30 chr1 53475666 53480672 -189183681 + L1MEc LINE L1 44 5230 -985 8205 179 125 14 chr1 53480686 53482569 -189181784 + L1MCa LINE L1 18 2110 -4316 2666 242 43 45 chr1 53482572 53483582 -189180771 + L1MCa LINE L1 2393 3400 -3026 477 360 71 49 chr1 53483604 53484098 -189180255 + L1PBb LINE L1 12 516 -6333 315 377 14 0 chr1 53484301 53484439 -189179914 + L1PBb LINE L1 795 934 -5915 280 334 68 19 chr1 53484670 53484940 -189179413 + L1PBb LINE L1 1041 1563 -5285 2952 222 32 9 chr1 53484953 53485860 -189178493 + L1PBb LINE L1 718 1726 -4477 269 305 107 8 chr1 53485862 53485993 -189178360 + L1PA12 LINE L1 260 403 -7178 4044 225 20 55 chr1 53486024 53487667 -189176686 + L1PA12 LINE L1 1698 3292 -4292 8558 60 2 12 chr1 53487670 53488945 -189175408 - L1PA5 LINE L1 -3266 2880 1618 19699 44 0 1 chr1 53488946 53489343 -189175010 + L1PA5 LINE L1 2906 3302 -2852 2302 92 0 0 chr1 53489343 53489636 -189174717 + AluSg SINE Alu 2 294 -16 19699 44 0 1 chr1 53489636 53492497 -189171856 + L1PA5 LINE L1 3302 6154 0 4526 176 55 0 chr1 53492499 53493367 -189170986 + L1PA12 LINE L1 3285 4200 -3384 6645 85 4 1 chr1 53493395 53494595 -189169758 + L1PA10 LINE L1 4960 6160 -8 746 190 0 6 chr1 53494596 53494754 -189169599 + L1ME1 LINE L1 5323 5479 -687 2203 189 35 2 chr1 53494761 53495158 -189169195 + MSTB LTR MaLR 4 413 -13 1571 223 62 3 chr1 53495195 53495580 -189168773 + L1ME1 LINE L1 5528 5935 -231 356 252 32 23 chr1 53495583 53495728 -189168625 + L1MA10 LINE L1 5986 6291 -43 654 300 61 52 chr1 53496680 53497123 -189167230 + MLT1J2 LTR MaLR 4 450 0 264 314 19 50 chr1 53497588 53497747 -189166606 + HAL1b LINE L1 308 461 -887 249 33 0 0 chr1 53498765 53498795 -189165558 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 704 277 80 9 chr1 53498807 53499031 -189165322 + MIR SINE MIR 23 262 0 56 0 0 0 chr1 53499440 53499496 -189164857 + AT_rich Low_complexity Low_complexity 1 56 0 544 180 60 0 chr1 53499496 53499596 -189164757 - FLAM_A SINE Alu -36 106 1 373 303 37 0 chr1 53499618 53499727 -189164626 + L2 LINE L2 3160 3272 0 1936 130 0 3 chr1 53499758 53500073 -189164280 + AluSx SINE Alu 1 314 0 937 274 66 0 chr1 53500158 53500399 -189163954 - MIR SINE MIR -1 261 5 382 253 220 23 chr1 53500422 53500590 -189163763 + MIR SINE MIR 17 212 -50 1811 174 3 0 chr1 53500652 53500951 -189163402 + AluJb SINE Alu 1 300 -12 548 261 56 40 chr1 53501312 53501551 -189162802 + MIR SINE MIR 21 261 -1 196 333 29 38 chr1 53501544 53501649 -189162704 - MIR SINE MIR -110 152 49 * 262 320 39 39 chr1 53502448 53502551 -189161802 - L2 LINE L2 -38 3234 3132 214 338 116 40 chr1 53502645 53502843 -189161510 - L2 LINE L2 -352 2962 2750 234 327 161 31 chr1 53503141 53503364 -189160989 - MIR SINE MIR -10 252 1 346 257 60 49 chr1 53503530 53503743 -189160610 + L1M4 LINE L1 52 575 -6280 725 227 101 36 chr1 53504281 53504386 -189159967 + L1M4 LINE L1 3782 3879 -3078 6286 94 2 8 chr1 53504386 53505984 -189158369 + L1PA14 LINE L1 4565 6160 -1 725 227 101 36 chr1 53505984 53506114 -189158239 + L1M4 LINE L1 3879 3999 -2958 2350 93 3 3 chr1 53506114 53506427 -189157926 + AluSq SINE Alu 1 313 0 725 227 101 36 chr1 53506427 53506547 -189157806 + L1M4 LINE L1 3999 4161 -2796 917 90 7 21 chr1 53506724 53506861 -189157492 - L1M1 LINE L1 -567 5735 5599 1460 111 0 0 chr1 53506861 53507074 -189157279 + L1MA1 LINE L1 6079 6294 -8 388 340 22 103 chr1 53507147 53507459 -189156894 - L2 LINE L2 -5 3267 2981 217 281 34 34 chr1 53507663 53507752 -189156601 - MIR3 SINE MIR -9 199 111 214 174 0 0 chr1 53507966 53508012 -189156341 + (TA)n Simple_repeat Simple_repeat 2 47 0 261 0 0 0 chr1 53508047 53508076 -189156277 + (CA)n Simple_repeat Simple_repeat 2 30 0 1252 197 80 0 chr1 53508792 53509041 -189155312 + L1PB4 LINE L1 5887 6155 -1 337 266 110 9 chr1 53509316 53509425 -189154928 - MIR SINE MIR -57 151 32 414 315 3 54 chr1 53509487 53509677 -189154676 - MIR SINE MIR -51 211 28 1347 210 48 23 chr1 53510771 53511124 -189153229 - L1MDa LINE L1 -2193 4347 3986 1661 205 54 6 chr1 53511128 53511479 -189152874 + MLT1A2 LTR MaLR 1 368 -6 5674 227 50 60 chr1 53511489 53513525 -189150828 - L1MDa LINE L1 -2558 3982 1991 2252 104 0 0 chr1 53513525 53513824 -189150529 - AluSc SINE Alu -10 299 1 5674 227 50 60 chr1 53513824 53515002 -189149351 - L1MDa LINE L1 -4549 1991 804 781 210 39 3 chr1 53514993 53515166 -189149187 - L1MDa LINE L1 -6223 320 28 * 2095 92 7 0 chr1 53515605 53515878 -189148475 + AluSc SINE Alu 5 279 -30 905 216 11 0 chr1 53516116 53516292 -189148061 + MER45A DNA AcHobo 1 178 0 186 407 42 0 chr1 53517099 53517217 -189147136 - L2 LINE L2 -209 3063 2941 5308 132 14 3 chr1 53518374 53519712 -189144641 - L1PA15 LINE L1 -1 6164 4815 957 242 8 27 chr1 53519717 53519977 -189144376 + L1PA13 LINE L1 1319 1573 -5214 483 258 96 45 chr1 53520025 53520203 -189144150 + L2 LINE L2 3127 3313 0 382 259 65 9 chr1 53520285 53520393 -189143960 - MIR SINE MIR -133 129 16 366 403 25 31 chr1 53520502 53520822 -189143531 - L2 LINE L2 -475 2839 2522 1741 167 3 19 chr1 53520965 53521277 -189143076 + AluJb SINE Alu 1 307 -5 6519 133 17 11 chr1 53521403 53523326 -189141027 - L1MA2 LINE L1 0 6304 4372 2915 133 23 15 chr1 53523327 53523807 -189140546 + Tigger1 DNA MER2_type 1935 2418 0 252 231 37 74 chr1 53523813 53523921 -189140432 + L1ME4a LINE L1 5991 6094 -27 815 241 4 80 chr1 53523930 53524167 -189140186 + MIR SINE MIR 42 260 -2 612 319 48 20 chr1 53524242 53524493 -189139860 - MIR SINE MIR -2 260 3 216 0 0 0 chr1 53524493 53524517 -189139836 + (ATG)n Simple_repeat Simple_repeat 3 26 0 202 217 0 0 chr1 53524639 53524685 -189139668 + (TTG)n Simple_repeat Simple_repeat 2 47 0 3237 51 8 2 chr1 53525075 53525470 -189138883 + MLT2A1 LTR ERVL 1 397 -47 947 126 138 0 chr1 53525455 53525614 -189138739 - THE1B LTR MaLR -183 181 1 * 629 271 44 30 chr1 53525621 53525824 -189138529 - MIR SINE MIR -55 207 2 2270 91 0 0 chr1 53525912 53526208 -189138145 + AluY SINE Alu 1 296 -15 764 262 13 8 chr1 53526631 53526868 -189137485 + L1ME4a LINE L1 5523 5760 -361 330 291 128 79 chr1 53526903 53527168 -189137185 + L1ME4a LINE L1 5838 6115 -6 21 0 0 0 chr1 53527570 53527591 -189136762 + AT_rich Low_complexity Low_complexity 1 21 0 1553 137 162 16 chr1 53529900 53530215 -189134138 + MER46B DNA MER2_type 1 236 0 535 290 47 0 chr1 53531044 53531213 -189133140 + HERVL LTR ERVL 3042 3218 -2436 411 306 53 0 chr1 53531634 53531762 -189132591 + MIR SINE MIR 24 145 -63 806 241 55 41 chr1 53531853 53532073 -189132280 - MIR SINE MIR -6 256 34 24 0 0 0 chr1 53532233 53532257 -189132096 + AT_rich Low_complexity Low_complexity 1 24 0 1933 180 25 36 chr1 53533060 53533499 -189130854 + L1MA9 LINE L1 5841 6274 -38 782 286 93 25 chr1 53533540 53533771 -189130582 + L1ME1 LINE L1 2208 2422 -3724 471 35 0 0 chr1 53533771 53533828 -189130525 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 782 286 93 25 chr1 53533828 53534145 -189130208 + L1ME1 LINE L1 2422 2793 -3353 318 338 84 17 chr1 53534315 53534552 -189129801 + L1ME1 LINE L1 3047 3299 -2847 246 269 0 15 chr1 53534554 53534621 -189129732 + L1M4 LINE L1 1 66 -6075 946 142 27 0 chr1 53534631 53534779 -189129574 + AluSg/x SINE Alu 143 294 -18 1038 168 0 84 chr1 53534786 53535036 -189129317 + L1MA10 LINE L1 6106 6334 0 476 262 27 0 chr1 53535058 53535283 -189129070 + L1M4 LINE L1 3149 3379 -2831 406 277 7 0 chr1 53535352 53535493 -189128860 + L1M3c LINE L1 2376 2517 -3693 2970 214 43 56 chr1 53535524 53535688 -189128665 + L1M3c LINE L1 3489 3654 -2556 2243 105 0 0 chr1 53535688 53535982 -189128371 + AluSc SINE Alu 3 296 -13 2970 214 43 56 chr1 53535982 53536848 -189127505 + L1M3c LINE L1 3654 4505 -1705 2135 238 146 46 chr1 53536853 53537995 -189126358 + L1ME1 LINE L1 3803 5058 -1088 * 21848 132 10 57 chr1 53537992 53542936 -189121417 - L1PA7 LINE L1 -1081 5065 377 6930 56 6 0 chr1 53542946 53544076 -189120277 + L1PA7 LINE L1 5043 6154 0 2365 245 62 48 chr1 53544089 53545175 -189119178 + L1ME1 LINE L1 5030 6122 -44 521 217 33 33 chr1 53545076 53545228 -189119125 + L1MA10 LINE L1 6182 6333 -1 * 763 289 36 0 chr1 53545336 53545561 -189118792 + MIR SINE MIR 4 236 -26 529 210 37 2 chr1 53545666 53545801 -189118552 - L1MA9 LINE L1 -281 5875 5736 * 1598 177 47 44 chr1 53545796 53546203 -189118150 + L1MA9 LINE L1 5871 6278 -34 732 287 55 38 chr1 53546211 53546448 -189117905 + MIR SINE MIR 20 260 -2 1061 252 112 3 chr1 53546479 53546828 -189117525 + Charlie2b DNA MER1_type 881 1267 -1515 607 212 37 95 chr1 53546883 53547261 -189117092 + Charlie2b DNA MER1_type 2148 2503 -279 626 217 8 0 chr1 53547279 53547399 -189116954 - FLAM_A SINE Alu -16 126 6 447 321 21 36 chr1 53547479 53547672 -189116681 - MIR SINE MIR -36 226 37 1833 189 6 16 chr1 53547692 53548058 -189116295 - L1PB4 LINE L1 -13 6143 5782 246 207 0 0 chr1 53548058 53548116 -189116237 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1923 147 0 3 chr1 53548118 53548432 -189115921 - L1PB4 LINE L1 -369 5787 5475 6860 53 10 1 chr1 53548447 53549994 -189114359 - L1PA7 LINE L1 -3 6151 4588 5575 83 91 0 chr1 53550002 53550809 -189113544 + L1PA7 LINE L1 3739 4618 -1528 381 89 0 0 chr1 53550800 53550856 -189113497 - L1PB4 LINE L1 -684 5484 5429 * 808 298 43 38 chr1 53550858 53551276 -189113077 + L2 LINE L2 2756 3313 0 181 353 96 7 chr1 53551323 53551459 -189112894 - L2 LINE L2 -6 3307 3160 2288 188 24 9 chr1 53551551 53551971 -189112382 + MSTB LTR MaLR 1 426 0 2716 116 3 0 chr1 53553150 53553522 -189110831 + THE1C LTR MaLR 3 375 0 1120 162 4 75 chr1 53553625 53553878 -189110475 + MER46A DNA MER2_type 2 236 0 193 364 0 0 chr1 53553937 53553992 -189110361 - L2 LINE L2 -14 3258 3204 568 297 168 0 chr1 53554004 53554206 -189110147 + MIR SINE MIR 4 239 -23 240 250 0 0 chr1 53554434 53554486 -189109867 + LTR30 LTR ERV1 1 52 -670 635 164 0 20 chr1 53554488 53554614 -189109739 + LTR12 LTR ERV1 100 205 -509 394 230 17 0 chr1 53554706 53554825 -189109528 + LTR30 LTR ERV1 544 643 -79 685 129 0 0 chr1 53554826 53554927 -189109426 + LTR12 LTR ERV1 481 581 -133 320 320 115 37 chr1 53555028 53555272 -189109081 - L2 LINE L2 -554 2760 2498 316 246 0 29 chr1 53555496 53555565 -189108788 + MER69 DNA AcHobo 1 67 -110 446 200 44 10 chr1 53555692 53555823 -189108530 + MER69 DNA AcHobo 2380 2526 0 242 323 31 0 chr1 53556153 53556218 -189108135 + MIR SINE MIR 31 97 -111 1075 196 89 77 chr1 53556315 53556755 -189107598 + LTR56 LTR ERV1 1 445 0 389 324 22 15 chr1 53557204 53557340 -189107013 + MIR SINE MIR 6 142 -120 303 353 34 0 chr1 53557818 53557937 -189106416 - L2 LINE L2 -10 3303 3181 1457 197 36 63 chr1 53558073 53558438 -189105915 + MLT1A2 LTR MaLR 7 361 -13 710 95 9 0 chr1 53559026 53559131 -189105222 - AluSg/x SINE Alu -9 303 198 316 203 0 0 chr1 53559938 53559997 -189104356 - MLT1K LTR MaLR -7 581 523 29 0 0 0 chr1 53560011 53560040 -189104313 + AT_rich Low_complexity Low_complexity 1 29 0 250 311 90 40 chr1 53560160 53560337 -189104016 - MLT1K LTR MaLR -211 377 192 183 283 17 33 chr1 53560454 53560514 -189103839 - L2 LINE L2 -828 2486 2428 1085 256 153 107 chr1 53563201 53564246 -189100107 + MER52A LTR ERV1 663 1755 0 1308 312 56 7 chr1 53564306 53564735 -189099618 + LTR33 LTR ERVL 1 450 -71 1457 263 99 33 chr1 53565740 53566763 -189097590 + L1M4 LINE L1 1342 2400 -4559 587 195 31 8 chr1 53566839 53566967 -189097386 - MLT1A1 LTR MaLR -9 356 226 785 169 5 25 chr1 53566982 53567170 -189097183 + MSTD LTR MaLR 15 194 -171 3144 257 65 47 chr1 53567181 53568485 -189095868 + L1M4 LINE L1 4461 5798 -1159 1318 244 101 19 chr1 53568485 53568676 -189095677 + MLT1D LTR MaLR 1 175 -330 381 22 0 0 chr1 53568676 53568722 -189095631 + (TG)n Simple_repeat Simple_repeat 2 47 0 1318 244 101 19 chr1 53568722 53568997 -189095356 + MLT1D LTR MaLR 175 505 0 3144 257 65 47 chr1 53568997 53569197 -189095156 + L1M4 LINE L1 5798 5993 -964 1559 246 42 8 chr1 53569206 53569726 -189094627 + L1M4 LINE L1 1001 1538 -4846 867 248 8 0 chr1 53569736 53569978 -189094375 + L1M4c LINE L1 2983 3226 -3156 4753 164 18 23 chr1 53569981 53571077 -189093276 + L1PA16 LINE L1 5068 6155 -11 454 236 36 0 chr1 53571099 53571209 -189093144 + L1M4 LINE L1 1533 1646 -4738 41510 56 2 14 chr1 53571234 53577452 -189086901 + L1PA4 LINE L1 14 6151 -4 384 271 23 23 chr1 53577539 53577668 -189086685 + MSTA LTR MaLR 64 192 -236 1663 170 22 39 chr1 53577792 53578150 -189086203 + MSTA LTR MaLR 77 428 0 337 142 9 113 chr1 53578163 53578269 -189086084 + L1M4 LINE L1 1714 1808 -4576 1260 240 75 44 chr1 53578302 53578873 -189085480 + L1M4 LINE L1 1943 2578 -3804 1583 186 30 18 chr1 53578873 53579207 -189085146 + MER44D DNA MER2_type 1 608 -1 1260 240 75 44 chr1 53579207 53579661 -189084692 + L1M4 LINE L1 2578 3016 -3366 22 0 0 0 chr1 53579713 53579735 -189084618 + AT_rich Low_complexity Low_complexity 1 22 0 269 283 277 69 chr1 53579768 53580118 -189084235 - L3 LINE CR1 -110 1467 1045 275 143 0 86 chr1 53581527 53581571 -189082782 - MLT2D LTR ERVL 0 464 427 336 24 0 0 chr1 53581571 53581612 -189082741 + (TG)n Simple_repeat Simple_repeat 1 41 0 275 143 0 86 chr1 53581612 53581637 -189082716 - MLT2D LTR ERVL -37 427 401 6745 65 5 2 chr1 53581646 53583024 -189081329 - L1PA7 LINE L1 -4 6150 4773 894 221 137 46 chr1 53583027 53583823 -189080530 + L1M4 LINE L1 4376 5293 -1089 * 25048 147 13 44 chr1 53583821 53588436 -189075917 - L1P LINE L1 -1081 5065 593 1809 217 6 6 chr1 53588446 53588805 -189075548 - MLT2D LTR ERVL -55 359 1 272 298 156 28 chr1 53588940 53589081 -189075272 - MIR3 SINE MIR -20 188 30 285 292 83 21 chr1 53589494 53589590 -189074763 + L2 LINE L2 2685 2786 -528 33 56 0 0 chr1 53589730 53589784 -189074569 + AT_rich Low_complexity Low_complexity 1 54 0 2630 102 5 11 chr1 53590202 53590576 -189073777 + THE1C LTR MaLR 3 374 -1 225 91 0 0 chr1 53590585 53590618 -189073735 + THE1C-int LTR MaLR 1548 1580 0 2173 157 11 13 chr1 53590618 53590994 -189073359 + THE1C LTR MaLR 1 375 0 8342 132 69 48 chr1 53590994 53592537 -189071816 + THE1C-int LTR MaLR 1 1576 -4 1606 164 95 17 chr1 53592541 53592889 -189071464 + THE1C LTR MaLR 1 375 0 1792 219 20 16 chr1 53592896 53593347 -189071006 + L1MC3 LINE L1 7309 7761 -24 1967 199 15 7 chr1 53593348 53593759 -189070594 + L1MB5 LINE L1 5729 6142 -32 1831 109 31 0 chr1 53593755 53594049 -189070304 - L1PA8A LINE L1 -788 5358 5056 * 5655 73 3 1 chr1 53594047 53594787 -189069566 + L1PA8A LINE L1 5364 6104 -27 21 0 0 0 chr1 53594938 53594959 -189069394 + AT_rich Low_complexity Low_complexity 1 21 0 1513 214 12 9 chr1 53595225 53595566 -189068787 - L1MA6 LINE L1 -10 7352 7011 3150 185 23 25 chr1 53595569 53596062 -189068291 - L1MA6 LINE L1 -481 6881 6389 2444 75 0 0 chr1 53596062 53596367 -189067986 - AluY SINE Alu -6 305 1 3150 185 23 25 chr1 53596367 53597057 -189067296 - L1MA6 LINE L1 -973 6389 5687 1100 328 58 25 chr1 53597065 53597654 -189066699 + L1PA12 LINE L1 9 616 -6965 336 311 77 70 chr1 53598087 53598360 -189065993 + L1M2 LINE L1 793 1067 -5782 8540 214 32 20 chr1 53598549 53601392 -189062961 + L1PA12 LINE L1 1752 4709 -2875 1657 129 0 4 chr1 53601496 53601737 -189062616 - AluSc SINE Alu -69 240 1 246 81 0 0 chr1 53601807 53601844 -189062509 + (CA)n Simple_repeat Simple_repeat 1 37 0 3523 192 29 12 chr1 53601844 53602647 -189061706 + L1P LINE L1 4414 5229 -917 879 64 37 0 chr1 53602648 53602757 -189061596 + AluY SINE Alu 1 113 -198 7607 230 57 6 chr1 53602758 53605923 -189058430 - L1MA6 LINE L1 -2138 5070 1665 1477 324 41 33 chr1 53606036 53606743 -189057610 - L1MA6 LINE L1 -6123 1086 160 802 274 86 19 chr1 53606945 53607259 -189057094 + L1ME LINE L1 5488 5822 -299 662 300 70 26 chr1 53607339 53607569 -189056784 + MIR SINE MIR 2 241 -21 364 343 96 24 chr1 53607797 53607963 -189056390 + L2 LINE L2 3092 3269 -3 239 301 43 32 chr1 53608061 53608154 -189056199 + MIR SINE MIR 7 100 -162 257 385 31 23 chr1 53608168 53608298 -189056055 - L2 LINE L2 -43 3229 3099 478 328 120 55 chr1 53608431 53609140 -189055213 + L2 LINE L2 2552 3295 -18 283 279 0 0 chr1 53609169 53609230 -189055123 + L2 LINE L2 3249 3309 -4 1782 264 66 78 chr1 53609956 53610921 -189053432 + L1M4 LINE L1 11 1022 -5837 1155 189 49 12 chr1 53610918 53611161 -189053192 + L1PA16 LINE L1 5899 6150 -16 * 285 292 146 0 chr1 53611194 53611324 -189053029 + L1M4 LINE L1 1013 1161 -5698 255 159 0 0 chr1 53611416 53611460 -189052893 + L1M4 LINE L1 1879 1922 -5037 1057 269 75 23 chr1 53611466 53612019 -189052334 - MER76 LTR ERV -44 644 1 550 261 10 5 chr1 53612021 53612216 -189052137 + L1M4 LINE L1 1939 2134 -4825 433 256 75 12 chr1 53612224 53612474 -189051879 + L1M4 LINE L1 2212 2545 -4471 3018 244 75 33 chr1 53612570 53613308 -189051045 + L1M4 LINE L1 2475 3181 -3776 1658 182 0 27 chr1 53613308 53613605 -189050748 + AluJo SINE Alu 1 289 -23 3018 244 75 33 chr1 53613605 53614395 -189049958 + L1M4 LINE L1 3181 4028 -2929 447 275 0 0 chr1 53614630 53614790 -189049563 + L1M4 LINE L1 4137 4296 -2661 1392 214 82 26 chr1 53614791 53614912 -189049441 + MLT1A1 LTR MaLR 5 118 -247 1823 201 25 30 chr1 53614912 53615310 -189049043 + MSTD LTR MaLR 1 396 0 1392 214 82 26 chr1 53615310 53615530 -189048823 + MLT1A1 LTR MaLR 118 365 0 5593 201 83 31 chr1 53615559 53617270 -189047083 + L1M4 LINE L1 4482 6284 -701 1457 171 46 41 chr1 53617447 53617816 -189046537 + L1MA7 LINE L1 5921 6291 0 216 0 0 0 chr1 53618239 53618263 -189046090 + (TA)n Simple_repeat Simple_repeat 2 25 0 493 176 0 11 chr1 53618640 53618731 -189045622 - MLT1F1 LTR MaLR -2 565 476 857 316 9 9 chr1 53619019 53619336 -189045017 - MLT1-int LTR MaLR -770 601 285 2490 53 0 3 chr1 53619566 53619866 -189044487 + AluY SINE Alu 1 299 -12 1578 255 81 19 chr1 53619922 53620434 -189043919 - MER68 LTR ERV1 0 562 41 260 274 0 0 chr1 53620483 53620545 -189043808 - MER77 LTR ERV1 -543 62 1 398 257 158 19 chr1 53620640 53621195 -189043158 + L1ME LINE L1 1335 1904 -4951 * 3732 87 2 0 chr1 53621188 53621695 -189042658 - L1P LINE L1 -1995 4151 3644 * 5198 92 8 1 chr1 53621694 53622442 -189041911 + L1P LINE L1 4155 4907 -1239 1881 124 50 0 chr1 53622447 53622729 -189041624 + AluSg SINE Alu 7 302 -8 862 256 51 84 chr1 53622732 53623396 -189040957 + L1ME LINE L1 2103 2744 -4394 284 170 23 193 chr1 53623471 53623642 -189040711 + L1ME LINE L1 2736 2877 -4261 238 222 19 0 chr1 53623642 53623696 -189040657 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 410 344 7 13 chr1 53623800 53623954 -189040399 + L2 LINE L2 2709 2861 -453 540 314 157 14 chr1 53623980 53624330 -189040023 + L2 LINE L2 2912 3311 -2 21 0 0 0 chr1 53624599 53624620 -189039733 + AT_rich Low_complexity Low_complexity 1 21 0 221 286 48 19 chr1 53625242 53625347 -189039006 + MIR SINE MIR 106 213 -49 332 268 110 8 chr1 53625407 53625534 -189038819 + L2 LINE L2 3093 3232 -81 2756 85 196 155 chr1 53625645 53626416 -189037937 + LTR12 LTR ERV1 31 714 0 216 338 14 14 chr1 53626840 53626914 -189037439 + MIR SINE MIR 20 93 -169 1242 211 36 14 chr1 53626931 53627206 -189037147 - AluJo SINE Alu -31 281 1 28 29 0 0 chr1 53627221 53627256 -189037097 + AT_rich Low_complexity Low_complexity 1 35 0 321 288 0 36 chr1 53627731 53627842 -189036511 - MIR SINE MIR -93 169 63 21 57 0 0 chr1 53627947 53627982 -189036371 + AT_rich Low_complexity Low_complexity 1 35 0 195 300 156 22 chr1 53628056 53628146 -189036207 + L2 LINE L2 3169 3270 -2 14146 200 43 14 chr1 53628231 53632992 -189031361 + L1PB1 LINE L1 6 5151 -1716 2329 101 0 0 chr1 53632992 53633288 -189031065 + AluSg SINE Alu 1 296 -14 14146 200 43 14 chr1 53633288 53634687 -189029666 + L1PB1 LINE L1 5151 6507 -360 389 139 20 20 chr1 53634703 53634804 -189029549 + (TA)n Simple_repeat Simple_repeat 1 101 0 2086 138 11 22 chr1 53634811 53635182 -189029171 + L1PB1 LINE L1 6501 6867 0 344 238 67 29 chr1 53635316 53635421 -189028932 - MIR SINE MIR 0 262 154 181 311 16 16 chr1 53635447 53635508 -189028845 + MIR SINE MIR 37 97 -111 1670 236 111 55 chr1 53635518 53636060 -189028293 - MLT1E LTR MaLR -19 574 3 250 254 16 0 chr1 53636200 53636263 -189028090 + MIR3 SINE MIR 108 171 -37 259 261 244 0 chr1 53636340 53636455 -189027898 + MIR SINE MIR 112 254 -8 308 281 42 0 chr1 53637006 53637102 -189027251 - LTR58 LTR ERV1 -230 449 350 202 213 85 0 chr1 53637716 53637763 -189026590 - MIR SINE MIR -127 81 31 2134 133 3 3 chr1 53638138 53638447 -189025906 - AluSx SINE Alu -1 311 3 5005 123 309 88 chr1 53638515 53639905 -189024448 - pTR5 LTR ERV1 0 2438 743 235 268 49 0 chr1 53639922 53640004 -189024349 - MIR SINE MIR -56 206 121 309 300 12 0 chr1 53640481 53640561 -189023792 - L2 LINE L2 -2 3270 3190 304 266 73 16 chr1 53641722 53641846 -189022507 - HAL1b LINE L1 -5 1343 1213 796 258 108 49 chr1 53641847 53642432 -189021921 - L1ME4a LINE L1 -176 5945 5318 790 158 128 0 chr1 53642557 53642737 -189021616 - L1PB4 LINE L1 -34 6120 5909 3431 169 15 30 chr1 53642739 53643123 -189021230 - L1PB4 LINE L1 -286 5870 5482 2298 84 0 10 chr1 53643123 53643422 -189020931 - AluY SINE Alu -15 296 1 3431 169 15 30 chr1 53643422 53644044 -189020309 - L1PB4 LINE L1 -674 5482 4878 1710 103 9 0 chr1 53644044 53644276 -189020077 - AluSx SINE Alu -16 296 63 3431 169 15 30 chr1 53644276 53644589 -189019764 - L1PB4 LINE L1 -1278 4878 4562 195 162 0 0 chr1 53644671 53644708 -189019645 + (CA)n Simple_repeat Simple_repeat 2 38 0 2416 64 0 0 chr1 53645078 53645374 -189018979 + AluY SINE Alu 5 300 -11 247 141 26 26 chr1 53645668 53645746 -189018607 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 640 188 8 0 chr1 53645986 53646103 -189018250 - L1M1 LINE L1 -6815 750 633 314 325 81 0 chr1 53646845 53647005 -189017348 + MIR SINE MIR 84 256 -6 218 279 16 0 chr1 53647489 53647550 -189016803 - MIR3 SINE MIR -1 207 146 210 290 43 43 chr1 53648234 53648303 -189016050 + MIR SINE MIR 26 94 -168 187 286 0 54 chr1 53648338 53648394 -189015959 + L2 LINE L2 3251 3303 -10 337 318 9 28 chr1 53648790 53648897 -189015456 - L2 LINE L2 -19 3253 3149 518 263 50 88 chr1 53649254 53649516 -189014837 + MIR SINE MIR 2 253 -9 468 273 60 27 chr1 53649680 53649830 -189014523 - MIR3 SINE MIR -5 203 49 739 311 60 8 chr1 53650040 53650275 -189014078 - MIR SINE MIR -13 249 3 350 326 0 0 chr1 53650302 53650400 -189013953 - MER81 DNA DNA 0 114 17 1175 35 0 0 chr1 53650630 53650775 -189013578 + L1PA4 LINE L1 6010 6154 -1 276 53 0 0 chr1 53650784 53650822 -189013531 + (T)n Simple_repeat Simple_repeat 1 38 0 207 261 0 0 chr1 53650895 53650941 -189013412 + (ATG)n Simple_repeat Simple_repeat 3 48 0 287 189 19 0 chr1 53651025 53651078 -189013275 - L2 LINE L2 0 3272 3219 348 308 76 111 chr1 53651112 53651403 -189012950 + L2 LINE L2 2077 2377 -895 1905 145 11 0 chr1 53651403 53651685 -189012668 - AluSx SINE Alu -27 285 1 348 308 76 111 chr1 53651685 53652446 -189011907 + L2 LINE L2 2377 3091 -181 184 303 0 0 chr1 53652547 53652580 -189011773 + L2 LINE L2 3254 3286 -27 197 391 0 0 chr1 53653986 53654055 -189010298 + L2 LINE L2 3203 3271 -1 2440 58 0 22 chr1 53654964 53655276 -189009077 - AluY SINE Alu -4 307 3 863 330 55 15 chr1 53655603 53656000 -189008353 + L2 LINE L2 2901 3313 0 337 300 138 25 chr1 53655990 53656150 -189008203 - MIR SINE MIR -65 197 20 * 730 261 158 0 chr1 53656658 53656880 -189007473 + MIR SINE MIR 6 262 0 268 259 141 12 chr1 53657000 53657085 -189007268 + MIR SINE MIR 160 255 -7 336 48 0 0 chr1 53657094 53657136 -189007217 + (ATG)n Simple_repeat Simple_repeat 1 42 0 253 297 55 22 chr1 53657166 53657257 -189007096 - L2 LINE L2 -23 3249 3156 355 358 0 44 chr1 53657691 53657828 -189006525 - MIR3 SINE MIR -75 133 3 355 284 57 35 chr1 53658474 53658615 -189005738 - L2 LINE L2 -1 3312 3169 438 240 10 0 chr1 53658783 53658879 -189005474 - MIR SINE MIR -108 154 58 2537 203 4 69 chr1 53658979 53659009 -189005344 - L1P LINE L1 -910 5236 5206 1400 105 10 0 chr1 53659009 53659209 -189005144 - L1PA16 LINE L1 -9 6157 5956 2537 203 4 69 chr1 53659209 53659901 -189004452 - L1P LINE L1 -940 5206 4561 2164 122 3 0 chr1 53659980 53660275 -189004078 + AluSx SINE Alu 6 301 -11 272 405 16 0 chr1 53661434 53661560 -189002793 - MIR SINE MIR -62 146 19 242 397 14 19 chr1 53661744 53661953 -189002400 - MIR SINE MIR -50 212 5 436 259 29 29 chr1 53662386 53662525 -189001828 - MIR SINE MIR -47 215 77 427 331 16 0 chr1 53662600 53662727 -189001626 + L2 LINE L2 3184 3312 -1 219 373 99 14 chr1 53662939 53663075 -189001278 + L2 LINE L2 3102 3250 -17 189 107 0 0 chr1 53663075 53663103 -189001250 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 291 237 220 25 chr1 53663427 53663545 -189000808 + MIR SINE MIR 116 256 -6 414 314 72 81 chr1 53664389 53664929 -188999424 + L2 LINE L2 2685 3225 -47 302 258 0 0 chr1 53664929 53664995 -188999358 - MER91 DNA MER1_type 0 190 131 8078 34 0 0 chr1 53665035 53666769 -188997584 - L1PA4 LINE L1 0 6155 4421 3156 45 1 1 chr1 53666769 53667176 -188997177 + L1P LINE L1 4056 4461 -1685 199 278 0 0 chr1 53667208 53667262 -188997091 + L2 LINE L2 3213 3266 -6 1681 151 68 0 chr1 53667496 53667807 -188996546 + L1PA16 LINE L1 5827 6158 -8 293 281 13 134 chr1 53667927 53668151 -188996202 + MIR SINE MIR 20 216 -46 261 235 47 35 chr1 53668231 53668316 -188996037 + MIR SINE MIR 69 154 -108 1772 195 86 6 chr1 53668324 53668683 -188995670 - MSTA LTR MaLR 0 428 41 280 326 87 23 chr1 53668696 53668868 -188995485 - MIR SINE MIR -73 189 7 231 301 23 60 chr1 53669013 53669146 -188995207 - MIR SINE MIR -9 253 126 232 319 69 14 chr1 53669283 53669355 -188994998 - MIR SINE MIR -95 113 38 4868 26 0 0 chr1 53669471 53670038 -188994315 - L1PA2 LINE L1 -4 6151 5585 5940 16 0 0 chr1 53670038 53670927 -188993426 + L1PA2 LINE L1 4690 5578 -577 817 309 24 8 chr1 53671180 53671426 -188992927 - MIR SINE MIR -8 254 5 231 361 69 15 chr1 53671437 53671567 -188992786 + L2 LINE L2 2718 2854 -460 268 309 172 20 chr1 53671569 53671773 -188992580 + MIR SINE MIR 12 246 -16 252 328 44 22 chr1 53671787 53671967 -188992386 + L2 LINE L2 2881 3064 -208 496 257 109 33 chr1 53672273 53672456 -188991897 - MIR SINE MIR -28 234 38 188 308 0 0 chr1 53672846 53672898 -188991455 + L3 LINE CR1 1516 1567 -10 418 235 129 30 chr1 53672973 53673105 -188991248 + L2 LINE L2 3164 3308 -5 297 236 64 36 chr1 53673561 53673671 -188990682 + L1ME LINE L1 5447 5559 -605 427 262 80 119 chr1 53673682 53674175 -188990178 - MLT1E LTR MaLR -65 490 20 1268 196 37 82 chr1 53674187 53674374 -188989979 + MER58D DNA MER1_type 1 162 -2258 2458 127 6 3 chr1 53674374 53674737 -188989616 - THE1B LTR MaLR 0 364 1 1268 196 37 82 chr1 53674737 53674952 -188989401 + MER58D DNA MER1_type 162 385 -1 190 152 65 0 chr1 53675001 53675047 -188989306 - MIR SINE MIR -96 166 118 3485 226 54 25 chr1 53675050 53676643 -188987710 + L1PB4 LINE L1 2314 3963 -3602 1865 157 19 29 chr1 53676721 53677098 -188987255 - THE1C LTR MaLR -2 373 1 9640 130 32 36 chr1 53677098 53678679 -188985674 - THE1C-int LTR MaLR 0 1580 6 1112 143 24 15 chr1 53678683 53678895 -188985458 - MLT2A2 LTR ERVL 0 453 293 451 117 65 0 chr1 53678894 53678971 -188985382 - MLT2A2 LTR ERVL -371 82 1 * 2623 196 77 5 chr1 53678982 53679636 -188984717 + L1PB4 LINE L1 4072 4772 -2793 746 101 0 234 chr1 53679645 53679872 -188984481 + L1PBa LINE L1 1 174 -6689 * 4435 196 17 27 chr1 53679866 53681714 -188982639 + L1PB4 LINE L1 5736 7575 0 3872 126 50 5 chr1 53681780 53682440 -188981913 - L1MA1 LINE L1 0 6302 5613 4927 165 28 31 chr1 53682440 53682778 -188981575 - L1P LINE L1 -1300 4846 4508 324 0 0 0 chr1 53682778 53682814 -188981539 + (TG)n Simple_repeat Simple_repeat 1 36 0 4927 165 28 31 chr1 53682814 53683587 -188980766 - L1P LINE L1 -1638 4508 3622 984 78 59 13 chr1 53683587 53683729 -188980624 + L1PA10 LINE L1 6005 6164 -4 35 71 0 0 chr1 53683733 53683803 -188980550 + AT_rich Low_complexity Low_complexity 1 70 0 17117 55 4 2 chr1 53683854 53686000 -188978353 + L1P LINE L1 3 2151 -3995 281 29 0 0 chr1 53686104 53686138 -188978215 + L1MA9 LINE L1 5888 5921 -391 * 6356 148 41 14 chr1 53686132 53688011 -188976342 + L1MA8 LINE L1 4092 6031 -260 198 0 0 0 chr1 53688011 53688033 -188976320 + (GGGTG)n Simple_repeat Simple_repeat 4 25 0 6356 148 41 14 chr1 53688033 53688300 -188976053 + L1MA8 LINE L1 6031 6289 -2 265 262 30 3 chr1 53688611 53688691 -188975662 - MIR SINE MIR -65 143 64 201 213 0 21 chr1 53688885 53688932 -188975421 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1354 134 51 0 chr1 53689078 53689295 -188975058 + MER30 DNA MER1_type 1 228 -2 21 0 0 0 chr1 53689530 53689551 -188974802 + AT_rich Low_complexity Low_complexity 1 21 0 5751 22 6 0 chr1 53689601 53690274 -188974079 + L1PA3 LINE L1 5477 6153 -2 23 0 0 0 chr1 53690734 53690757 -188973596 + AT_rich Low_complexity Low_complexity 1 23 0 278 345 32 41 chr1 53690849 53691105 -188973248 + L2 LINE L2 2795 3046 -226 238 289 31 10 chr1 53691126 53691223 -188973130 + MIR SINE MIR 150 248 -14 266 298 107 0 chr1 53691271 53691355 -188972998 + MIR SINE MIR 149 241 -21 2738 97 11 0 chr1 53691355 53691726 -188972627 + THE1C LTR MaLR 1 375 0 3888 163 36 12 chr1 53692055 53692742 -188971611 + MER44D DNA MER2_type 1 704 -1 180 333 0 35 chr1 53692755 53692812 -188971541 + MIR SINE MIR 20 74 -134 182 239 87 0 chr1 53693446 53693492 -188970861 - L2 LINE L2 -2 3270 3221 307 364 17 0 chr1 53693555 53693673 -188970680 - MIR SINE MIR -93 169 50 650 290 61 49 chr1 53694002 53694612 -188969741 + L1M4 LINE L1 3632 4248 -1898 * 6425 143 21 4 chr1 53694611 53696151 -188968202 + L1MA3 LINE L1 4735 6305 0 343 333 43 21 chr1 53696675 53696816 -188967537 + MIR SINE MIR 15 158 -104 1863 129 21 66 chr1 53696816 53697195 -188967158 - THE1C LTR MaLR 0 375 14 396 311 0 0 chr1 53697212 53697315 -188967038 + MIR SINE MIR 157 259 -3 2363 125 17 81 chr1 53698510 53698931 -188965422 - L1MA2 LINE L1 -84 6220 5832 5409 22 0 0 chr1 53698931 53699554 -188964799 - L1PA4 LINE L1 0 6155 5533 2363 125 17 81 chr1 53699554 53699613 -188964740 - L1MA2 LINE L1 -472 5832 5771 6402 146 17 6 chr1 53699650 53701037 -188963316 - L1MA2 LINE L1 0 7723 6324 1844 166 39 17 chr1 53701034 53701295 -188963058 - L1MA2 LINE L1 -1464 6101 5826 * 14433 171 4 20 chr1 53701295 53704545 -188959808 + L1PA12 LINE L1 2506 5766 -402 2544 51 0 19 chr1 53704545 53704861 -188959492 + AluY SINE Alu 1 310 -1 14433 171 4 20 chr1 53704861 53705258 -188959095 + L1PA12 LINE L1 5766 6168 0 1844 166 39 17 chr1 53705258 53705405 -188958948 - L1MA2 LINE L1 -1739 5826 5684 1032 145 39 0 chr1 53705404 53705611 -188958742 - L1MA2 LINE L1 -3999 3566 3352 * 41725 42 4 2 chr1 53705714 53711630 -188952723 + L1PA4 LINE L1 221 6148 -7 35 54 0 0 chr1 53711638 53711694 -188952659 + AT_rich Low_complexity Low_complexity 1 56 0 16067 189 35 9 chr1 53711694 53712989 -188951364 - L1MA2 LINE L1 -4276 3289 2028 1700 227 67 60 chr1 53712989 53713539 -188950814 - MLT2B3 LTR ERVL 0 554 1 16067 189 35 9 chr1 53713539 53714305 -188950048 - L1MA2 LINE L1 -5537 2028 1283 2040 135 7 0 chr1 53714305 53714602 -188949751 + AluSc SINE Alu 1 299 -10 16067 189 35 9 chr1 53714602 53715686 -188948667 - L1MA2 LINE L1 -6282 1283 63 2685 189 22 51 chr1 53715696 53716406 -188947947 + pTR5 LTR ERV1 769 1458 -980 6967 40 28 0 chr1 53716426 53717330 -188947023 - L1PA5 LINE L1 -5 6149 5220 10059 163 26 21 chr1 53717459 53719280 -188945073 - L1M1 LINE L1 -4552 3013 1185 7435 221 29 30 chr1 53719291 53723319 -188941034 + L1PA16 LINE L1 2272 6158 -8 658 215 1 1 chr1 53723311 53723329 -188941024 - L1M3 LINE L1 -506 5677 5660 * 180 77 0 0 chr1 53723329 53723355 -188940998 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 658 215 1 1 chr1 53723355 53723495 -188940858 - L1M3 LINE L1 -522 5661 5545 * 2299 234 42 107 chr1 53723492 53724688 -188939665 - L1MDa LINE L1 -5256 1284 13 180 0 0 0 chr1 53724710 53724730 -188939623 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 2940 162 6 4 chr1 53725088 53725564 -188938789 - MER66B LTR ERV1 -4 482 6 568 307 35 46 chr1 53725964 53726213 -188938140 - MIR SINE MIR -11 251 4 5079 138 43 3 chr1 53726693 53727552 -188936801 - Ricksha_a DNA DNA -7 1174 282 798 153 14 7 chr1 53727559 53727703 -188936650 - Ricksha_a DNA DNA -1027 154 10 232 333 78 10 chr1 53727703 53727805 -188936548 - MIR SINE MIR -70 138 30 429 163 7 70 chr1 53727868 53728008 -188936345 + MER8 DNA MER2_type 25 239 0 269 293 57 28 chr1 53728326 53728432 -188935921 - MIR3 SINE MIR -17 191 83 339 181 83 0 chr1 53728584 53728656 -188935697 - MIR SINE MIR -95 167 90 197 196 39 39 chr1 53730499 53730550 -188933803 - L2 LINE L2 -1 3271 3221 289 305 85 37 chr1 53730629 53730793 -188933560 - MIR SINE MIR -66 196 25 492 48 0 0 chr1 53730813 53730876 -188933477 + (TG)n Simple_repeat Simple_repeat 2 64 0 266 217 133 0 chr1 53731738 53731798 -188932555 + MIR SINE MIR 83 150 -112 210 320 6 114 chr1 53731849 53732024 -188932329 + L2 LINE L2 3003 3158 -114 275 280 108 0 chr1 53732074 53732167 -188932186 - L2 LINE L2 -10 3303 3201 449 207 50 16 chr1 53732685 53732806 -188931547 + MER94 DNA DNA 10 134 0 414 263 201 5 chr1 53732818 53733027 -188931326 + MIR SINE MIR 7 256 -6 344 227 182 0 chr1 53733053 53733141 -188931212 + MIR3 SINE MIR 63 166 -42 213 322 172 0 chr1 53733811 53733898 -188930455 - L2 LINE L2 -11 3261 3160 518 287 0 0 chr1 53733901 53734023 -188930330 - MIR3 SINE MIR -10 198 77 4180 72 44 2 chr1 53734023 53734589 -188929764 + L1PA7 LINE L1 5565 6154 0 12731 189 34 30 chr1 53734590 53739501 -188924852 + L1PB1 LINE L1 1886 6866 -1 21 0 0 0 chr1 53739501 53739522 -188924831 + AT_rich Low_complexity Low_complexity 1 21 0 222 246 105 0 chr1 53740048 53740105 -188924248 - L2 LINE L2 -44 3269 3207 683 303 171 48 chr1 53740187 53740603 -188923750 - L2 LINE L2 -340 2974 2508 294 307 16 16 chr1 53740730 53740866 -188923487 - MIR SINE MIR -58 150 22 200 119 0 24 chr1 53740893 53740935 -188923418 + (CATA)n Simple_repeat Simple_repeat 4 44 0 402 274 180 29 chr1 53740952 53741162 -188923191 + MIR SINE MIR 8 261 -1 447 326 95 37 chr1 53741546 53741788 -188922565 - L3 LINE CR1 -1 1576 1321 204 333 83 39 chr1 53742189 53742345 -188922008 + MIR3 SINE MIR 34 196 -12 236 261 31 0 chr1 53742985 53743050 -188921303 - L2 LINE L2 -5 3267 3201 197 296 0 25 chr1 53743184 53743265 -188921088 + L2 LINE L2 3193 3271 -1 486 321 55 25 chr1 53743586 53743823 -188920530 - L2 LINE L2 -443 2871 2628 183 380 12 12 chr1 53743915 53744078 -188920275 - L2 LINE L2 -1625 1689 1527 340 400 36 0 chr1 53744255 53744395 -188919958 - L2 LINE L2 -1 3271 3127 1856 203 81 96 chr1 53744559 53745223 -188919130 + MLT1E1 LTR MaLR 1 654 0 349 376 5 11 chr1 53745643 53745832 -188918521 + L2 LINE L2 2065 2252 -1062 454 297 20 27 chr1 53746808 53746956 -188917397 + MIR SINE MIR 5 151 -111 698 290 112 58 chr1 53747367 53747922 -188916431 + MLT1K LTR MaLR 4 588 0 236 154 0 0 chr1 53748010 53748049 -188916304 - MLT1A2 LTR MaLR -4 370 332 8036 233 49 56 chr1 53748139 53749932 -188914421 + L1MA4A LINE L1 10 1815 -5033 2062 152 3 0 chr1 53749932 53750242 -188914111 + AluSx SINE Alu 1 311 -1 8036 233 49 56 chr1 53750242 53752371 -188911982 + L1MA4A LINE L1 1815 3903 -2945 3975 167 19 23 chr1 53752364 53753660 -188910693 + L1MA4A LINE L1 5400 6693 -312 * 182 262 0 0 chr1 53753711 53753753 -188910600 + L2 LINE L2 2933 2974 -339 219 36 0 0 chr1 53753879 53753907 -188910446 + (TC)n Simple_repeat Simple_repeat 1 28 0 2657 67 0 0 chr1 53754006 53754335 -188910018 - HERVL-A1 LTR ERVL -1336 4318 3990 * 11659 67 2 13 chr1 53754331 53755715 -188908638 - HERVL-A1 LTR ERVL -4161 1493 126 2372 87 3 0 chr1 53755715 53756013 -188908340 + AluY SINE Alu 1 299 -12 11659 67 2 13 chr1 53756013 53756138 -188908215 - HERVL-A1 LTR ERVL -5528 126 1 2972 100 27 18 chr1 53756138 53756578 -188907775 - MLT2A1 LTR ERVL 0 444 1 272 325 89 35 chr1 53756794 53756963 -188907390 + L2 LINE L2 2872 3049 -223 882 208 3 3 chr1 53756991 53757301 -188907052 + MSTD LTR MaLR 1 389 -7 274 233 107 29 chr1 53757926 53758029 -188906324 + MIR SINE MIR 81 191 -71 205 291 128 35 chr1 53758029 53758170 -188906183 + MIR SINE MIR 84 237 -25 331 266 83 28 chr1 53758703 53758812 -188905541 + MIR SINE MIR 50 164 -98 420 319 142 32 chr1 53759445 53759784 -188904569 - HAL1 LINE L1 -717 1790 1415 442 290 21 28 chr1 53760149 53760294 -188904059 + MIR SINE MIR 8 151 -111 381 275 101 34 chr1 53760623 53760772 -188903581 - L2 LINE L2 0 3313 3155 336 298 186 37 chr1 53760799 53761148 -188903205 - L2 LINE L2 0 3313 2913 627 39 0 0 chr1 53761348 53761426 -188902927 + (CCA)n Simple_repeat Simple_repeat 3 80 0 440 315 81 20 chr1 53762206 53762403 -188901950 - MIR SINE MIR -6 256 48 4184 172 67 15 chr1 53762555 53763374 -188900979 - MER21B LTR ERV1 -1 862 1 316 241 72 104 chr1 53763421 53763604 -188900749 + L1ME4a LINE L1 5843 6017 -104 4385 76 71 28 chr1 53763604 53764237 -188900116 - PABL_A LTR ERV1 0 660 1 316 241 72 104 chr1 53764237 53764302 -188900051 + L1ME4a LINE L1 6017 6083 -38 2471 245 24 10 chr1 53764849 53765446 -188898907 + L1ME3A LINE L1 5553 6157 -13 520 328 70 76 chr1 53765554 53765930 -188898423 - L2 LINE L2 0 3272 2877 1963 133 13 26 chr1 53765930 53766232 -188898121 + AluJb SINE Alu 1 298 -14 520 328 70 76 chr1 53766232 53766530 -188897823 - L2 LINE L2 -395 2877 2579 329 235 37 12 chr1 53766851 53766932 -188897421 + MER58B DNA MER1_type 249 331 -10 4831 64 195 0 chr1 53767940 53768631 -188895722 + LTR12 LTR ERV1 1 826 0 617 285 66 22 chr1 53769251 53769482 -188894871 + MIR SINE MIR 18 259 -3 24 0 0 0 chr1 53769563 53769587 -188894766 + AT_rich Low_complexity Low_complexity 1 24 0 661 220 31 49 chr1 53769765 53769988 -188894365 - L1MC5 LINE L1 -62 7899 7681 225 227 74 0 chr1 53770074 53770153 -188894200 - MIR SINE MIR -43 165 80 2017 187 70 39 chr1 53770435 53771006 -188893347 - MER69 DNA AcHobo 0 2526 1938 411 258 10 10 chr1 53771004 53771101 -188893252 - MER69 DNA AcHobo -2427 99 3 * 2091 122 7 7 chr1 53772251 53772555 -188891798 - AluSx SINE Alu -8 304 1 427 274 48 0 chr1 53772732 53772856 -188891497 - L2 LINE L2 -15 3298 3169 497 280 150 5 chr1 53772865 53773190 -188891163 - MLT1J2 LTR MaLR 0 450 20 326 333 39 20 chr1 53773304 53773457 -188890896 - L2 LINE L2 -212 3060 2905 350 265 0 0 chr1 53774376 53774459 -188889894 + MIR SINE MIR 180 262 0 356 316 23 30 chr1 53775157 53775290 -188889063 + L2 LINE L2 3141 3272 0 2327 77 0 3 chr1 53775366 53775664 -188888689 - AluY SINE Alu -14 297 1 195 358 42 47 chr1 53775671 53775864 -188888489 - MIR SINE MIR -51 211 20 518 295 154 0 chr1 53776022 53776178 -188888175 - MER5A DNA MER1_type 0 189 10 699 331 37 49 chr1 53777014 53777443 -188886910 + L2 LINE L2 2545 2968 -346 352 304 0 29 chr1 53777635 53777737 -188886616 + L2 LINE L2 3181 3279 -34 184 375 10 0 chr1 53777716 53777820 -188886533 + MIR SINE MIR 152 256 -6 * 720 253 43 78 chr1 53779271 53779528 -188884825 - MIR SINE MIR -10 252 5 388 301 142 22 chr1 53779514 53779697 -188884656 - MIR SINE MIR -10 252 48 * 257 424 11 15 chr1 53780307 53780569 -188883784 + L2 LINE L2 2630 2890 -424 205 348 45 34 chr1 53780546 53780635 -188883718 - MIR3 SINE MIR -104 104 15 * 205 306 108 36 chr1 53780774 53780885 -188883468 - L2 LINE L2 -47 3225 3107 726 243 0 7 chr1 53780965 53781105 -188883248 + MIR3 SINE MIR 20 158 -50 655 265 161 14 chr1 53781182 53781393 -188882960 - MIR SINE MIR 0 262 21 186 266 0 0 chr1 53781875 53781954 -188882399 + (TA)n Simple_repeat Simple_repeat 1 79 0 475 317 16 33 chr1 53782129 53782312 -188882041 - MIR SINE MIR -82 180 1 309 246 48 138 chr1 53782672 53782839 -188881514 + L2 LINE L2 3159 3310 -3 180 286 0 0 chr1 53783414 53783456 -188880897 - L3 LINE CR1 -508 1069 1028 1604 193 11 54 chr1 53783575 53783948 -188880405 + MLT1A1 LTR MaLR 7 363 -2 187 222 22 0 chr1 53784002 53784047 -188880306 + L2 LINE L2 3268 3313 0 253 369 91 47 chr1 53784227 53784547 -188879806 + L2 LINE L2 2638 2971 -343 2217 199 20 77 chr1 53784554 53785141 -188879212 + MLT2B3 LTR ERVL 1 554 0 272 240 0 0 chr1 53785166 53785216 -188879137 + MIR SINE MIR 201 250 -12 231 61 0 0 chr1 53786910 53786943 -188877410 + (GA)n Simple_repeat Simple_repeat 1 33 0 254 305 144 8 chr1 53786985 53787103 -188877250 + MIR SINE MIR 18 151 -57 2086 185 32 27 chr1 53787131 53787681 -188876672 - MLT2A2 LTR ERVL 0 554 1 1126 236 119 45 chr1 53788528 53788931 -188875422 - MLT2B1 LTR ERVL -2 518 86 2546 64 0 0 chr1 53788987 53789298 -188875055 - AluY SINE Alu 0 311 1 240 282 13 0 chr1 53789573 53789651 -188874702 - L1ME LINE L1 -361 5760 5682 490 286 29 46 chr1 53790539 53790714 -188873639 - MIR SINE MIR -14 248 77 210 377 55 8 chr1 53790767 53791003 -188873350 - L2 LINE L2 -1771 1543 1297 1310 233 30 53 chr1 53791583 53791982 -188872371 - MLT1B LTR MaLR 0 390 1 2035 104 13 0 chr1 53792357 53792674 -188871679 + L1MA3 LINE L1 2003 2323 -5242 * 13577 167 32 23 chr1 53792673 53793214 -188871139 + L1MA3 LINE L1 3629 4164 -3560 2293 104 3 0 chr1 53793214 53793511 -188870842 + AluSp SINE Alu 1 298 -15 13577 167 32 23 chr1 53793511 53794672 -188869681 + L1MA3 LINE L1 4164 5313 -2411 1927 153 68 8 chr1 53794672 53795026 -188869327 + THE1C LTR MaLR 1 375 0 13577 167 32 23 chr1 53795026 53797377 -188866976 + L1MA3 LINE L1 5313 7724 0 1343 194 18 38 chr1 53797461 53797709 -188866644 - MLT2B1 LTR ERVL 0 515 263 465 50 0 0 chr1 53797709 53797769 -188866584 + (GA)n Simple_repeat Simple_repeat 1 60 0 1343 194 18 38 chr1 53797769 53797988 -188866365 - MLT2B1 LTR ERVL -252 263 1 342 306 89 17 chr1 53798083 53798263 -188866090 + L2 LINE L2 3118 3310 -3 1817 151 99 3 chr1 53798893 53799197 -188865156 + MER1B DNA MER1_type 7 339 0 222 283 0 0 chr1 53799228 53799281 -188865072 - L2 LINE L2 -2 3311 3259 312 143 0 0 chr1 53799694 53799750 -188864603 + (CA)n Simple_repeat Simple_repeat 1 56 0 930 113 0 0 chr1 53800205 53800347 -188864006 + (TA)n Simple_repeat Simple_repeat 1 142 0 461 150 100 0 chr1 53800353 53800433 -188863920 - MER1A DNA MER1_type -16 513 426 392 158 53 13 chr1 53800402 53800478 -188863875 - MER1A DNA MER1_type -242 287 209 * 322 132 15 15 chr1 53800479 53800547 -188863806 + (CA)n Simple_repeat Simple_repeat 2 69 0 206 196 87 0 chr1 53800679 53800725 -188863628 - L2 LINE L2 -1 3312 3263 24 0 0 0 chr1 53800730 53800754 -188863599 + AT_rich Low_complexity Low_complexity 1 24 0 227 222 74 0 chr1 53802157 53802211 -188862142 + L2 LINE L2 3213 3270 -2 336 283 10 0 chr1 53802796 53802895 -188861458 + (TTA)n Simple_repeat Simple_repeat 3 102 0 638 299 35 0 chr1 53802914 53803111 -188861242 - MIR SINE MIR -7 255 52 315 324 56 7 chr1 53803200 53803342 -188861011 - HAL1b LINE L1 -7 1341 1193 333 0 0 0 chr1 53803345 53803382 -188860971 + (TG)n Simple_repeat Simple_repeat 2 38 0 375 191 16 0 chr1 53803444 53803507 -188860846 + Charlie5 DNA MER1_type 18 81 -2531 253 292 0 62 chr1 53803614 53803710 -188860643 - MLT2E LTR ERVL -524 104 15 727 186 34 88 chr1 53803782 53803986 -188860367 + MER3 DNA MER1_type 12 204 -5 587 345 92 47 chr1 53804126 53804232 -188860121 + L2 LINE L2 2353 2453 -861 2502 60 0 0 chr1 53804232 53804530 -188859823 + AluY SINE Alu 13 310 -1 587 345 92 47 chr1 53804530 53805021 -188859332 + L2 LINE L2 2453 2977 -337 401 281 113 23 chr1 53805377 53805584 -188858769 + MIR SINE MIR 4 236 -26 197 246 101 43 chr1 53805755 53805824 -188858529 + MIR3 SINE MIR 117 189 -19 380 246 136 38 chr1 53806542 53806696 -188857657 + MIR SINE MIR 31 197 -61 268 335 84 39 chr1 53806702 53806881 -188857472 + MIR3 SINE MIR 12 198 -10 253 276 69 60 chr1 53807180 53807296 -188857057 - L3 LINE CR1 -32 1545 1429 428 242 102 25 chr1 53807505 53807662 -188856691 + MIR SINE MIR 54 222 -40 847 218 76 14 chr1 53807667 53807878 -188856475 + MER58A DNA MER1_type 1 224 0 530 297 165 5 chr1 53807993 53808213 -188856140 - MIR SINE MIR -11 251 3 567 279 14 7 chr1 53808851 53808991 -188855362 - MIR3 SINE MIR -14 194 54 540 222 99 35 chr1 53809061 53809232 -188855121 - MIR SINE MIR -2 260 79 303 303 78 99 chr1 53809490 53809786 -188854567 - L1ME4a LINE L1 -70 6051 5773 261 0 0 0 chr1 53809786 53809815 -188854538 + (CA)n Simple_repeat Simple_repeat 2 30 0 303 303 78 99 chr1 53809815 53810131 -188854222 - L1ME4a LINE L1 -348 5773 5452 1539 191 35 18 chr1 53810757 53811097 -188853256 - L1MB2 LINE L1 -4 6167 5822 3749 213 63 45 chr1 53811102 53811453 -188852900 - L1MB2 LINE L1 -540 5765 5422 202 0 59 29 chr1 53811453 53811487 -188852866 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2091 114 0 4 chr1 53811489 53811769 -188852584 - AluSg SINE Alu -31 279 1 3749 213 63 45 chr1 53811769 53811986 -188852367 - L1MB2 LINE L1 -883 5422 5210 2060 124 3 3 chr1 53811986 53812277 -188852076 + AluSc SINE Alu 1 291 -18 3749 213 63 45 chr1 53812277 53813101 -188851252 - L1MB2 LINE L1 -1095 5210 4322 608 235 17 0 chr1 53813102 53813217 -188851136 - FLAM_A SINE Alu -20 122 6 2334 190 10 27 chr1 53813227 53813749 -188850604 - L1MB2 LINE L1 -1821 4325 3813 11064 33 5 0 chr1 53814074 53816170 -188848183 - L1PA3 LINE L1 -3 6152 4050 3571 26 0 0 chr1 53816170 53816594 -188847759 + L1PA3 LINE L1 3621 4044 -2102 1229 280 34 14 chr1 53817186 53817540 -188846813 + LTR16B LTR ERVL 102 462 -2 237 299 28 97 chr1 53817656 53817800 -188846553 - MIR SINE MIR -79 183 50 234 289 169 0 chr1 53817886 53817969 -188846384 + MER45 DNA AcHobo 10 106 -934 1485 244 78 15 chr1 53818130 53818540 -188845813 + LTR40b LTR ERVL 27 462 0 594 290 49 22 chr1 53818594 53818818 -188845535 + MIR SINE MIR 20 249 -13 403 333 9 0 chr1 53819127 53819241 -188845112 - L2 LINE L2 -7 3306 3192 1040 262 179 35 chr1 53819403 53819834 -188844519 - LTR33 LTR ERVL -8 513 21 350 357 32 58 chr1 53820960 53821268 -188843085 - L2 LINE L2 -345 2969 2670 277 210 16 0 chr1 53821978 53822040 -188842313 + MIR SINE MIR 184 246 -16 188 191 21 64 chr1 53822008 53822055 -188842298 + L2 LINE L2 3259 3303 -10 * 25 51 0 0 chr1 53822083 53822122 -188842231 + AT_rich Low_complexity Low_complexity 1 39 0 400 316 7 22 chr1 53822326 53822462 -188841891 + MIR SINE MIR 28 161 -101 259 354 20 129 chr1 53822755 53823022 -188841331 - L2 LINE L2 -5 3267 3052 1896 167 0 0 chr1 53823022 53823498 -188840855 + AluJb SINE Alu 1 476 0 259 354 20 129 chr1 53823498 53823622 -188840731 - L2 LINE L2 -220 3052 2916 459 0 0 0 chr1 53824212 53824263 -188840090 + (CA)n Simple_repeat Simple_repeat 2 52 0 252 339 97 0 chr1 53824397 53824521 -188839832 + L3 LINE CR1 1105 1240 -337 312 288 152 0 chr1 53824615 53824740 -188839613 - L2 LINE L2 -1 3312 3169 779 237 58 82 chr1 53824742 53824793 -188839560 - MLT2C2 LTR ERVL 0 464 413 467 108 11 0 chr1 53824793 53824886 -188839467 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 779 237 58 82 chr1 53824886 53825214 -188839139 - MLT2C2 LTR ERVL -51 413 94 351 283 92 17 chr1 53825314 53825434 -188838919 - MIR SINE MIR -44 218 90 2187 196 12 16 chr1 53825434 53825867 -188838486 + MLT2C2 LTR ERVL 1 485 -35 230 60 24 83 chr1 53825910 53825994 -188838359 + (TATAA)n Simple_repeat Simple_repeat 5 83 0 528 238 143 87 chr1 53826018 53826249 -188838104 - MLT2D LTR ERVL -74 340 97 1250 279 155 7 chr1 53826296 53826734 -188837619 - L1MEc LINE L1 -5855 541 39 191 217 38 123 chr1 53826921 53826976 -188837377 + MIR SINE MIR 68 111 -151 1883 141 3 32 chr1 53826976 53827288 -188837065 - AluSx SINE Alu -9 303 1 191 217 38 123 chr1 53827288 53827338 -188837015 + MIR SINE MIR 111 164 -98 378 292 39 8 chr1 53827538 53827668 -188836685 + MIR SINE MIR 85 218 -44 3139 174 24 11 chr1 53827695 53828328 -188836025 + L1MB5 LINE L1 5526 6166 -8 2086 208 34 2 chr1 53828506 53828919 -188835434 - MSTB LTR MaLR 0 426 1 210 37 0 0 chr1 53828947 53828974 -188835379 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 285 227 148 11 chr1 53829792 53829880 -188834473 - L2 LINE L2 0 3313 3214 331 283 117 23 chr1 53830103 53830302 -188834051 - MIR SINE MIR -43 219 5 222 183 17 17 chr1 53830485 53830545 -188833808 + (TTA)n Simple_repeat Simple_repeat 2 61 0 34 0 0 0 chr1 53830564 53830598 -188833755 + AT_rich Low_complexity Low_complexity 1 34 0 294 321 12 92 chr1 53830613 53830853 -188833500 - MIR SINE MIR -18 244 24 190 229 0 21 chr1 53831082 53831130 -188833223 - MIR SINE MIR -27 235 189 497 247 126 40 chr1 53831153 53831303 -188833050 + MIR SINE MIR 8 185 -77 2120 120 3 0 chr1 53831303 53831602 -188832751 + AluSx SINE Alu 1 300 -12 497 247 126 40 chr1 53831602 53831674 -188832679 + MIR SINE MIR 185 249 -13 263 347 35 24 chr1 53831663 53831833 -188832520 - MIR SINE MIR -90 172 1 * 635 314 72 62 chr1 53831941 53832314 -188832039 + L2 LINE L2 2896 3272 0 339 292 4 91 chr1 53832958 53833201 -188831152 + L2 LINE L2 2174 2395 -919 403 65 0 0 chr1 53833607 53833669 -188830684 - Alu SINE Alu -6 306 245 789 284 89 25 chr1 53833948 53834275 -188830078 - L2 LINE L2 -792 2522 2175 234 91 0 0 chr1 53834295 53834328 -188830025 + (TG)n Simple_repeat Simple_repeat 2 34 0 1688 140 8 4 chr1 53834455 53834719 -188829634 + AluSq SINE Alu 1 265 -48 1805 129 66 11 chr1 53834986 53835272 -188829081 + AluSq SINE Alu 4 305 -8 466 290 109 31 chr1 53835711 53835904 -188828449 - MIR SINE MIR -48 214 7 308 315 164 18 chr1 53836628 53836793 -188827560 - MIR SINE MIR -12 250 62 394 264 123 19 chr1 53837187 53837399 -188826954 - L1ME4a LINE L1 -223 5898 5665 253 363 11 11 chr1 53837424 53837515 -188826838 + L3 LINE CR1 1380 1470 -107 855 214 118 46 chr1 53837536 53837840 -188826513 - PABL_A LTR ERV1 0 660 335 341 316 38 48 chr1 53837846 53838055 -188826298 - PABL_B LTR ERV1 -460 207 1 434 289 169 6 chr1 53838379 53838545 -188825808 + MIR SINE MIR 70 262 0 1512 285 148 10 chr1 53840292 53840906 -188823447 - L2 LINE L2 -339 2975 2277 2880 158 49 19 chr1 53840946 53841473 -188822880 + MER6A DNA MER2_type 63 605 0 970 272 29 16 chr1 53841477 53841790 -188822563 - L2 LINE L2 -1076 2238 1922 3433 183 116 13 chr1 53841790 53842539 -188821814 - LTR1B LTR ERV1 0 826 1 415 243 54 68 chr1 53842788 53842936 -188821417 - MIR3 SINE MIR -18 190 45 399 248 147 56 chr1 53843176 53843374 -188820979 + MIR SINE MIR 47 262 0 207 0 0 0 chr1 53843691 53843714 -188820639 + (A)n Simple_repeat Simple_repeat 1 23 0 226 365 76 52 chr1 53843810 53844098 -188820255 - L2 LINE L2 -92 3180 2886 592 296 48 26 chr1 53844172 53844361 -188819992 - MIR3 SINE MIR -2 206 14 209 105 0 26 chr1 53844608 53844646 -188819707 + (TA)n Simple_repeat Simple_repeat 1 37 0 2509 93 22 0 chr1 53844886 53845251 -188819102 + L1PBa LINE L1 1 373 -6490 1354 105 11 0 chr1 53845262 53845453 -188818900 + L1PB1 LINE L1 5942 6134 -17 2817 10 0 0 chr1 53845578 53845889 -188818464 + AluYa5 SINE Alu 1 311 0 340 312 61 64 chr1 53845940 53846002 -188818351 - L2 LINE L2 -40 3273 3212 2220 152 21 18 chr1 53846002 53846391 -188817962 - MLT1B LTR MaLR 0 390 1 340 312 61 64 chr1 53846391 53846674 -188817679 - L2 LINE L2 -101 3212 2929 193 300 131 39 chr1 53846959 53847089 -188817264 - L2 LINE L2 -303 2969 2828 1255 230 63 61 chr1 53847322 53847634 -188816719 - MLT1D LTR MaLR -2 503 188 2395 81 0 10 chr1 53847634 53847944 -188816409 - AluY SINE Alu -4 307 1 1255 230 63 61 chr1 53847944 53848092 -188816261 - MLT1D LTR MaLR -317 188 42 2265 169 43 86 chr1 53848092 53848193 -188816160 - MER41C LTR ERV1 0 554 450 2158 113 0 7 chr1 53848193 53848503 -188815850 - AluSc SINE Alu -1 308 1 2265 169 43 86 chr1 53848503 53848549 -188815804 - MER41C LTR ERV1 -104 450 404 2328 82 0 0 chr1 53848549 53848840 -188815513 + AluY SINE Alu 20 310 -1 2265 169 43 86 chr1 53848840 53849270 -188815083 - MER41C LTR ERV1 -150 404 1 4550 140 21 30 chr1 53849270 53850108 -188814245 - MER41C-int LTR ERV1 0 5946 5116 * 11434 115 50 41 chr1 53850091 53851756 -188812597 - MER41C-int LTR ERV1 -977 4969 3279 650 47 0 0 chr1 53851756 53851841 -188812512 - L1PA2 LINE L1 0 6155 6071 11434 115 50 41 chr1 53851841 53852401 -188811952 - MER41C-int LTR ERV1 -2667 3279 2725 7353 170 80 16 chr1 53852387 53853902 -188810451 - MER41C-int LTR ERV1 -3387 2559 1083 * 3328 162 16 54 chr1 53854161 53854828 -188809525 - MER41C-int LTR ERV1 -5298 648 7 2668 178 12 47 chr1 53854835 53855409 -188808944 - MER41C LTR ERV1 0 554 1 501 273 86 20 chr1 53855969 53856167 -188808186 - MLT1J2 LTR MaLR -239 211 1 293 229 0 0 chr1 53857143 53857204 -188807149 - L2 LINE L2 -1 3271 3211 204 356 59 25 chr1 53857709 53857827 -188806526 - L2 LINE L2 -226 3046 2925 23 33 0 0 chr1 53858714 53858744 -188805609 + AT_rich Low_complexity Low_complexity 1 30 0 319 248 111 17 chr1 53858905 53859022 -188805331 - MIR SINE MIR -44 218 91 264 197 145 13 chr1 53859131 53859207 -188805146 - MIR SINE MIR -46 216 131 441 348 0 7 chr1 53859211 53859349 -188805004 - L2 LINE L2 -5 3308 3172 1784 297 52 43 chr1 53859494 53859554 -188804799 - L2 LINE L2 -349 2965 2907 1447 228 51 81 chr1 53859554 53860125 -188804228 + MLT2B3 LTR ERVL 1 554 0 1784 297 52 43 chr1 53860125 53860266 -188804087 - L2 LINE L2 -407 2907 2769 2476 80 0 0 chr1 53860266 53860567 -188803786 + AluY SINE Alu 1 301 -10 1784 297 52 43 chr1 53860567 53861058 -188803295 - L2 LINE L2 -545 2769 2266 196 233 23 116 chr1 53861073 53861159 -188803194 - MIR SINE MIR -95 113 36 242 230 106 18 chr1 53861620 53861733 -188802620 - L1ME LINE L1 -435 5686 5564 217 306 232 19 chr1 53861772 53861898 -188802455 + MIR SINE MIR 11 135 -73 22 0 0 0 chr1 53862346 53862368 -188801985 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 53862446 53862467 -188801886 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr1 53862567 53862591 -188801762 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2222 99 0 0 chr1 53862601 53862883 -188801470 - AluSc SINE Alu -27 282 1 198 0 0 0 chr1 53862884 53862906 -188801447 + (TTA)n Simple_repeat Simple_repeat 3 24 0 327 51 0 0 chr1 53862906 53862945 -188801408 - L1PA8 LINE L1 -18 6154 6116 2485 51 12 0 chr1 53862945 53863280 -188801073 + L1P3 LINE L1 5281 5619 -535 332 377 29 0 chr1 53863326 53863501 -188800852 - L1ME3A LINE L1 -214 5956 5777 435 258 11 6 chr1 53863662 53863840 -188800513 - L1 LINE L1 -2580 3566 3388 5729 200 26 22 chr1 53864028 53865313 -188799040 - L1PA12 LINE L1 -6290 1291 2 1948 133 0 36 chr1 53865619 53865947 -188798406 - AluSx SINE Alu 0 312 1 271 243 14 14 chr1 53866069 53866139 -188798214 - L2 LINE L2 -4 3268 3199 1960 145 0 0 chr1 53866420 53866696 -188797657 - AluSx SINE Alu -35 277 2 21 0 0 0 chr1 53866698 53866719 -188797634 + AT_rich Low_complexity Low_complexity 1 21 0 2060 125 0 0 chr1 53866755 53867056 -188797297 - AluSx SINE Alu 0 301 1 282 330 87 17 chr1 53867404 53867577 -188796776 - L2 LINE L2 -960 2354 2170 347 348 43 0 chr1 53867633 53867748 -188796605 - MIR SINE MIR -68 140 21 1280 202 18 107 chr1 53868273 53868674 -188795679 + MLT1A1 LTR MaLR 1 365 0 234 240 2 58 chr1 53868746 53868806 -188795547 - MIR SINE MIR -63 145 92 1990 175 96 46 chr1 53868806 53869287 -188795066 + MLT1D LTR MaLR 1 505 0 234 240 2 58 chr1 53869287 53869305 -188795048 - MIR SINE MIR -116 92 75 253 382 57 14 chr1 53869311 53869607 -188794746 + L2 LINE L2 1897 2205 -1109 552 258 102 32 chr1 53869726 53869965 -188794388 + L1MEc LINE L1 1515 1752 -880 315 294 16 32 chr1 53869967 53869992 -188794361 - L1MEc LINE L1 -4965 1431 1407 2269 147 46 14 chr1 53869992 53870407 -188793946 - MSTA LTR MaLR 0 428 1 315 294 16 32 chr1 53870407 53870507 -188793846 - L1MEc LINE L1 -4989 1407 1308 * 322 317 200 19 chr1 53870505 53870710 -188793643 + L1MEc LINE L1 1760 2001 -4395 1969 89 0 12 chr1 53870799 53871056 -188793297 + AluY SINE Alu 44 297 -14 236 274 95 12 chr1 53871190 53871274 -188793079 - L2 LINE L2 0 3272 3182 454 359 73 22 chr1 53872014 53872287 -188792066 - L2 LINE L2 -1 3271 2985 899 109 124 0 chr1 53872297 53872434 -188791919 - AluY SINE Alu -15 296 143 1761 111 10 64 chr1 53872509 53872806 -188791547 + AluSx SINE Alu 26 306 -6 21 71 0 0 chr1 53873065 53873107 -188791246 + AT_rich Low_complexity Low_complexity 1 42 0 1220 263 82 23 chr1 53873230 53873667 -188790686 - MLT1C LTR MaLR -4 463 1 323 272 47 106 chr1 53873973 53874274 -188790079 - MLT1I LTR MaLR -45 364 82 871 279 52 22 chr1 53874345 53874750 -188789603 - L1ME LINE L1 -358 5804 5388 24 0 0 0 chr1 53874751 53874775 -188789578 + AT_rich Low_complexity Low_complexity 1 24 0 189 256 0 0 chr1 53874782 53874825 -188789528 - MIR SINE MIR -10 252 210 1904 155 47 11 chr1 53874981 53875343 -188789010 + THE1C LTR MaLR 1 375 0 1027 299 94 11 chr1 53875646 53875794 -188788559 + MLT1J LTR MaLR 1 135 -376 744 199 244 54 chr1 53875794 53875850 -188788503 + MSTD LTR MaLR 1 45 -351 1782 183 7 13 chr1 53875850 53876156 -188788197 + AluJb SINE Alu 1 304 -8 744 199 244 54 chr1 53876156 53876431 -188787922 + MSTD LTR MaLR 45 395 -1 1027 299 94 11 chr1 53876431 53876740 -188787613 + MLT1J LTR MaLR 135 496 -15 348 349 99 0 chr1 53876838 53876990 -188787363 + MIR SINE MIR 66 232 -30 289 286 13 0 chr1 53877312 53877389 -188786964 + MIR SINE MIR 5 82 -180 402 74 0 0 chr1 53877640 53877694 -188786659 + (CAT)n Simple_repeat Simple_repeat 2 55 0 346 244 74 22 chr1 53877781 53877916 -188786437 - MIR SINE MIR -66 142 53 21 36 0 0 chr1 53878101 53878129 -188786224 + AT_rich Low_complexity Low_complexity 1 28 0 341 263 167 45 chr1 53878630 53878786 -188785567 - MIR SINE MIR 0 262 88 350 268 57 50 chr1 53878834 53879068 -188785285 - HAL1b LINE L1 -3 6118 1115 348 296 161 19 chr1 53879088 53879460 -188784893 - L1ME4a LINE L1 -218 5903 5479 4167 157 30 15 chr1 53879642 53880438 -188783915 - L1MC2 LINE L1 -12 6332 5525 4555 68 27 0 chr1 53880440 53881097 -188783256 - L1PA7 LINE L1 -755 5391 4717 5827 64 4 0 chr1 53881097 53881843 -188782510 + L1PA7 LINE L1 5400 6150 -4 6892 62 10 5 chr1 53881845 53883209 -188781144 + L1PA7 LINE L1 4786 6154 0 1257 168 28 6 chr1 53883209 53883549 -188780804 - L1MC2 LINE L1 -743 5403 5196 1226 201 36 95 chr1 53883611 53883999 -188780354 - MLT1A1 LTR MaLR 0 365 1 260 276 41 8 chr1 53884340 53884463 -188779890 - L1MC2 LINE L1 -1511 4635 4509 287 259 71 0 chr1 53884987 53885072 -188779281 - MIR SINE MIR -64 198 108 679 288 76 17 chr1 53885081 53885317 -188779036 + MIR SINE MIR 2 251 -11 1292 293 59 4 chr1 53885643 53886099 -188778254 + L2 LINE L2 2565 3056 -257 195 237 0 0 chr1 53886323 53886361 -188777992 - MIR3 SINE MIR -38 170 133 207 100 0 0 chr1 53886439 53886469 -188777884 + (CA)n Simple_repeat Simple_repeat 2 31 0 371 287 20 99 chr1 53886591 53886793 -188777560 + MER5A DNA MER1_type 3 188 -1 285 273 102 11 chr1 53886894 53886982 -188777371 - MIR SINE MIR -97 111 16 308 296 82 37 chr1 53887491 53887626 -188776727 + MIR3 SINE MIR 42 182 -26 2087 131 141 0 chr1 53887821 53888196 -188776157 - MSTA LTR MaLR 0 428 1 305 294 29 10 chr1 53888545 53888647 -188775706 - MIR SINE MIR -42 220 117 266 98 20 0 chr1 53888710 53888761 -188775592 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 226 239 90 0 chr1 53889116 53889183 -188775170 + MIR SINE MIR 86 158 -104 2340 95 3 0 chr1 53890091 53890385 -188773968 + AluSp SINE Alu 1 295 -18 856 187 3 159 chr1 53890495 53890778 -188773575 - MER8 DNA MER2_type 0 239 1 775 243 133 0 chr1 53890919 53891137 -188773216 + MIR SINE MIR 3 249 -13 5609 97 30 12 chr1 53891753 53892305 -188772048 + L1PA10 LINE L1 4795 5335 -933 1884 138 0 71 chr1 53892305 53892630 -188771723 + AluSx SINE Alu 1 302 -10 5609 97 30 12 chr1 53892630 53893523 -188770830 + L1PA10 LINE L1 5335 6268 0 2186 125 0 7 chr1 53893526 53893823 -188770530 + AluSx SINE Alu 1 295 -17 1116 200 59 106 chr1 53894015 53894796 -188769557 - LTR8A LTR ERV1 -7 720 1 398 308 34 94 chr1 53895028 53895294 -188769059 - L2 LINE L2 -79 3193 2944 289 390 17 0 chr1 53895335 53895507 -188768846 - L2 LINE L2 -463 2851 2677 404 285 46 15 chr1 53895715 53895845 -188768508 - MIR SINE MIR -109 153 20 1232 231 114 52 chr1 53895986 53896485 -188767868 + L1M4 LINE L1 3662 4191 -1955 395 299 86 11 chr1 53896687 53896861 -188767492 + MIR SINE MIR 5 191 -71 488 293 44 19 chr1 53896863 53897068 -188767285 + MIR SINE MIR 53 262 0 204 40 0 0 chr1 53897431 53897456 -188766897 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 246 143 0 0 chr1 53898548 53898583 -188765770 - MIR SINE MIR -172 90 56 317 276 38 148 chr1 53898583 53898847 -188765506 + L2 LINE L2 2812 3046 -226 221 240 0 0 chr1 53898847 53898897 -188765456 + L2 LINE L2 3264 3313 0 277 257 88 26 chr1 53899491 53899604 -188764749 - MIR3 SINE MIR -1 207 88 504 306 25 6 chr1 53899735 53899895 -188764458 + MIR SINE MIR 25 187 -75 256 362 9 43 chr1 53900417 53900533 -188763820 + MIR SINE MIR 16 127 -81 449 326 43 95 chr1 53900541 53900888 -188763465 + L2 LINE L2 2896 3224 -48 326 298 126 91 chr1 53901065 53901461 -188762892 - L2 LINE L2 0 3272 2863 293 327 98 7 chr1 53901851 53902001 -188762352 - MIR SINE MIR -66 142 19 713 254 121 17 chr1 53902558 53902623 -188761730 - L1ME2 LINE L1 -23 6141 6084 5627 218 63 52 chr1 53902623 53904360 -188759993 - MER52A LTR ERV1 0 1755 1 713 254 121 17 chr1 53904360 53904641 -188759712 - L1ME2 LINE L1 -80 6084 5759 718 272 46 0 chr1 53904659 53904920 -188759433 - L1M4 LINE L1 -2409 3561 3289 515 248 31 37 chr1 53904920 53905081 -188759272 + MER8 DNA MER2_type 1 160 -79 1377 186 11 49 chr1 53905083 53905347 -188759006 - AluJo SINE Alu -40 272 19 240 227 61 0 chr1 53905425 53905491 -188758862 - Tigger2 DNA MER2_type -2647 71 2 258 260 34 38 chr1 53905551 53905682 -188758671 + MLT1H LTR MaLR 65 171 -238 644 245 81 21 chr1 53906038 53906421 -188757932 - L1M4 LINE L1 -2810 3160 2755 432 228 106 55 chr1 53906548 53906785 -188757568 - L1ME3A LINE L1 -134 6036 5788 231 275 9 9 chr1 53906793 53906902 -188757451 - L1M4 LINE L1 -4755 1136 1028 249 33 0 0 chr1 53907035 53907065 -188757288 + (TC)n Simple_repeat Simple_repeat 2 31 0 15265 37 23 2 chr1 53907704 53913573 -188750780 - L1PA2 LINE L1 -1 6154 1 1488 222 58 37 chr1 53913843 53914368 -188749985 - MER21B LTR ERV1 -7 869 365 452 128 23 35 chr1 53914379 53914465 -188749888 - MER21B LTR ERV1 -778 85 1 1598 217 37 15 chr1 53914510 53914915 -188749438 + LTR52 LTR ERVL 6 419 -2 196 254 115 49 chr1 53914950 53915072 -188749281 + MIR SINE MIR 120 249 -13 515 245 62 70 chr1 53915110 53915351 -188749002 + L2 LINE L2 3074 3312 -1 4058 150 4 26 chr1 53915665 53916387 -188747966 - LTR8A LTR ERV1 -11 716 11 398 293 26 17 chr1 53916422 53916538 -188747815 - MIR SINE MIR -62 146 30 33 43 0 0 chr1 53917248 53917295 -188747058 + AT_rich Low_complexity Low_complexity 1 47 0 512 283 68 48 chr1 53917890 53918125 -188746228 + MIR SINE MIR 5 243 -19 266 296 74 52 chr1 53918280 53918415 -188745938 + MIR3 SINE MIR 3 140 -68 211 364 13 0 chr1 53918547 53918624 -188745729 - MIR SINE MIR -97 111 34 248 277 0 0 chr1 53918987 53919052 -188745301 + CT-rich Low_complexity Low_complexity 2 66 0 3271 142 51 3 chr1 53919112 53919677 -188744676 - LTR49 LTR ERV1 -1 594 3 27369 153 78 47 chr1 53919679 53922099 -188742254 - LTR49-int LTR ERV1 0 6331 3988 2206 102 3 22 chr1 53922099 53922414 -188741939 + AluY SINE Alu 1 309 -2 27369 153 78 47 chr1 53922414 53924516 -188739837 - LTR49-int LTR ERV1 -2343 3988 1953 348 83 0 0 chr1 53924516 53924564 -188739789 + (TG)n Simple_repeat Simple_repeat 1 48 0 27369 153 78 47 chr1 53924564 53924975 -188739378 - LTR49-int LTR ERV1 -4378 1953 1556 376 274 0 0 chr1 53924975 53925048 -188739305 - tRNA-Glu-GAG tRNA tRNA 0 75 3 27369 153 78 47 chr1 53925048 53926179 -188738174 - LTR49-int LTR ERV1 -4775 1556 1 3340 151 36 5 chr1 53926181 53926758 -188737595 - LTR49 LTR ERV1 0 595 1 916 268 152 60 chr1 53926759 53927241 -188737112 - MLT1H LTR MaLR -23 526 1 876 172 7 21 chr1 53927505 53927630 -188736723 + FRAM SINE Alu 21 145 -167 369 0 0 0 chr1 53927630 53927671 -188736682 + (TG)n Simple_repeat Simple_repeat 2 42 0 876 172 7 21 chr1 53927671 53927690 -188736663 + FRAM SINE Alu 145 163 -13 2158 110 35 62 chr1 53928060 53928391 -188735962 + THE1B LTR MaLR 1 322 -42 2203 110 0 0 chr1 53928391 53928682 -188735671 - AluY SINE Alu -20 291 1 2158 110 35 62 chr1 53928682 53928724 -188735629 + THE1B LTR MaLR 322 364 0 184 365 96 0 chr1 53929032 53929136 -188735217 + L2 LINE L2 3162 3275 -38 224 350 47 59 chr1 53929146 53929400 -188734953 + L2 LINE L2 2682 2932 -382 234 0 0 0 chr1 53929450 53929476 -188734877 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chr1 53929568 53929601 -188734752 + AT_rich Low_complexity Low_complexity 1 33 0 233 276 17 6 chr1 53930207 53930381 -188733972 + (TA)n Simple_repeat Simple_repeat 1 176 0 180 218 192 26 chr1 53930421 53930499 -188733854 - MIR SINE MIR -73 189 99 2179 105 3 0 chr1 53931240 53931534 -188732819 + AluSx SINE Alu 1 295 -17 327 253 57 19 chr1 53931553 53931711 -188732642 + L1M4 LINE L1 4784 4947 -1199 28 29 0 0 chr1 53931753 53931788 -188732565 + AT_rich Low_complexity Low_complexity 1 35 0 536 292 70 73 chr1 53931951 53932677 -188731676 - L1MC4a LINE L1 -176 5988 5265 37150 35 2 1 chr1 53932774 53938276 -188726077 - L1PA3 LINE L1 -8 6147 640 4769 59 6 2 chr1 53938266 53938906 -188725447 + L1PA3 LINE L1 4 646 -5500 * 660 269 148 34 chr1 53939081 53939736 -188724617 - L1MC4a LINE L1 -1119 5027 4298 631 161 0 0 chr1 53939764 53939894 -188724459 - L1MA4 LINE L1 -4 6296 6167 10679 163 11 5 chr1 53939919 53942690 -188721663 - L1PA13 LINE L1 -5 6809 4011 5064 186 23 7 chr1 53942699 53944385 -188719968 - L1PA13 LINE L1 -3678 3119 1395 4100 261 114 5 chr1 53944390 53945345 -188719008 - L1PA13 LINE L1 -5532 1255 156 2299 104 3 0 chr1 53945345 53945644 -188718709 + AluSc SINE Alu 2 301 -8 4100 261 114 5 chr1 53945644 53945820 -188718533 - L1PA13 LINE L1 -6631 156 1 5171 142 27 12 chr1 53945827 53946864 -188717489 - L1MA4 LINE L1 -113 6187 5138 365 362 48 22 chr1 53947310 53947539 -188716814 - MIR SINE MIR -9 253 19 400 299 73 30 chr1 53947542 53947706 -188716647 + MIR SINE MIR 31 201 -61 328 229 60 0 chr1 53947704 53947787 -188716566 + MER5B DNA MER1_type 80 167 -11 * 329 305 99 58 chr1 53948095 53948318 -188716035 + MIR SINE MIR 6 237 -25 389 314 29 0 chr1 53948982 53949087 -188715266 + MIR SINE MIR 47 154 -108 211 283 87 80 chr1 53949461 53949599 -188714754 - MIR3 SINE MIR -38 170 32 787 306 50 4 chr1 53949808 53950050 -188714303 - MIR SINE MIR -2 260 8 33 25 0 0 chr1 53950401 53950441 -188713912 + AT_rich Low_complexity Low_complexity 1 40 0 351 0 0 0 chr1 53950788 53950827 -188713526 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 148 0 0 chr1 53950889 53950943 -188713410 + (TAA)n Simple_repeat Simple_repeat 1 54 0 289 247 41 0 chr1 53951029 53951102 -188713251 - MIR SINE MIR -114 148 73 204 40 0 0 chr1 53951149 53951174 -188713179 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 187 229 0 42 chr1 53951245 53951293 -188713060 + L2 LINE L2 3227 3272 0 267 155 282 0 chr1 53951293 53951364 -188712989 + MIR SINE MIR 172 262 0 259 203 51 0 chr1 53952395 53952454 -188711899 - L2 LINE L2 -20 3293 3232 337 179 24 0 chr1 53952983 53953067 -188711286 + (TA)n Simple_repeat Simple_repeat 1 86 0 195 173 39 96 chr1 53953489 53953541 -188710812 - L2 LINE L2 -16 3297 3249 221 263 62 12 chr1 53954166 53954246 -188710107 + MIR SINE MIR 107 190 -72 203 256 0 0 chr1 53954349 53954388 -188709965 + polypyrimidine Low_complexity Low_complexity 2 40 0 286 362 31 0 chr1 53954394 53954521 -188709832 - L2 LINE L2 -10 3303 3173 1471 332 88 47 chr1 53954658 53955805 -188708548 - L2 LINE L2 -357 2957 1764 35 63 0 0 chr1 53956020 53956083 -188708270 + AT_rich Low_complexity Low_complexity 1 63 0 699 300 20 24 chr1 53956133 53956386 -188707967 + L2 LINE L2 3062 3313 0 384 273 78 93 chr1 53956425 53956681 -188707672 - L1ME4a LINE L1 -213 5908 5708 1851 253 74 28 chr1 53957028 53957606 -188706747 + L1MDa LINE L1 22 626 -5914 * 3437 198 85 14 chr1 53957605 53958510 -188705843 + L1MDa LINE L1 1353 2325 -4215 558 0 0 0 chr1 53958510 53958572 -188705781 + (TA)n Simple_repeat Simple_repeat 1 62 0 474 206 57 68 chr1 53958582 53958606 -188705747 + L1MD2 LINE L1 6004 6027 -332 1851 124 48 92 chr1 53958606 53958802 -188705551 - THE1B LTR MaLR -2 362 190 2195 82 0 27 chr1 53958802 53959095 -188705258 - AluY SINE Alu -10 301 17 1851 124 48 92 chr1 53959095 53959277 -188705076 - THE1B LTR MaLR -174 190 1 474 206 57 68 chr1 53959277 53959547 -188704806 + L1MD2 LINE L1 6027 6344 -15 1953 135 11 3 chr1 53959757 53960039 -188704314 + AluSx SINE Alu 1 284 -28 315 0 0 0 chr1 53960052 53960087 -188704266 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 223 340 92 26 chr1 53960142 53960295 -188704058 + MIR3 SINE MIR 3 165 -43 194 286 16 0 chr1 53960395 53960458 -188703895 - L3 LINE CR1 -1266 311 248 238 333 71 64 chr1 53960889 53961030 -188703323 - MIR3 SINE MIR -27 181 40 315 252 182 3 chr1 53961134 53961264 -188703089 - MIR3 SINE MIR -65 143 7 291 375 36 62 chr1 53961573 53961848 -188702505 + L2 LINE L2 2907 3174 -98 775 259 87 35 chr1 53961996 53962282 -188702071 - MLT1J1 LTR MaLR -135 311 11 274 262 9 103 chr1 53962534 53962669 -188701684 + MIR SINE MIR 4 126 -82 385 288 20 0 chr1 53962967 53963113 -188701240 + L1ME LINE L1 5653 5801 -320 2381 73 0 10 chr1 53963367 53963668 -188700685 - AluY SINE Alu -13 298 1 837 176 28 22 chr1 53963837 53964019 -188700334 - L1MB8 LINE L1 -10 6168 5986 1948 172 17 3 chr1 53964020 53964368 -188699985 - MER47A DNA MER2_type -13 353 1 285 207 37 12 chr1 53964378 53964460 -188699893 + (TG)n Simple_repeat Simple_repeat 1 84 0 332 325 31 15 chr1 53964808 53964955 -188699398 + MIR SINE MIR 40 187 -65 431 280 42 53 chr1 53965785 53965974 -188698379 - MIR3 SINE MIR -13 195 9 379 307 87 0 chr1 53966007 53966157 -188698196 + MIR SINE MIR 34 196 -66 370 350 58 27 chr1 53966871 53967131 -188697222 - L2 LINE L2 -173 3099 2832 1545 220 207 25 chr1 53967275 53967893 -188696460 + L2 LINE L2 2580 3307 -6 231 332 42 58 chr1 53968758 53968948 -188695405 - L2 LINE L2 -1 3312 3126 1715 167 90 6 chr1 53968949 53969284 -188695069 + MLT1A1 LTR MaLR 3 365 0 254 326 73 71 chr1 53969297 53969637 -188694716 - L2 LINE L2 -773 2541 2201 392 290 65 8 chr1 53969962 53970086 -188694267 + MIR SINE MIR 20 150 -112 298 318 45 0 chr1 53971282 53971370 -188692983 + L2 LINE L2 3151 3242 -30 2380 88 0 0 chr1 53971444 53971749 -188692604 - AluY SINE Alu -6 305 1 201 391 45 8 chr1 53972001 53972134 -188692219 - MIR SINE MIR -73 189 52 814 247 23 0 chr1 53972380 53972554 -188691799 + MER45A DNA AcHobo 1 178 0 23 54 0 0 chr1 53974385 53974422 -188689931 + AT_rich Low_complexity Low_complexity 1 37 0 208 316 58 36 chr1 53974676 53974815 -188689538 + L3 LINE CR1 1356 1497 -80 392 303 82 34 chr1 53975176 53975384 -188688969 - MIR SINE MIR -24 238 21 537 314 53 14 chr1 53975522 53975729 -188688624 - MIR SINE MIR 0 262 48 2451 104 34 8 chr1 53977018 53977373 -188686980 - THE1B LTR MaLR 0 364 1 306 293 30 20 chr1 53977521 53977620 -188686733 + MIR SINE MIR 31 130 -78 478 336 186 4 chr1 53977954 53978234 -188686119 + L3 LINE CR1 1246 1576 -1 312 355 76 67 chr1 53978378 53978840 -188685513 - L2 LINE L2 0 3272 2807 2173 133 43 8 chr1 53979456 53979825 -188684528 + L1PA16 LINE L1 5785 6166 0 328 241 25 13 chr1 53980114 53980193 -188684160 + MIR SINE MIR 75 154 -108 207 355 45 0 chr1 53980265 53980375 -188683978 - L2 LINE L2 -650 2664 2550 200 280 61 106 chr1 53981882 53982014 -188682339 + L2 LINE L2 3053 3178 -94 2057 191 75 0 chr1 53982372 53982770 -188681583 - MSTA LTR MaLR 0 428 1 33 25 0 0 chr1 53983104 53983144 -188681209 + AT_rich Low_complexity Low_complexity 1 40 0 672 258 35 50 chr1 53983933 53984183 -188680170 + MIR SINE MIR 14 256 -6 188 167 62 42 chr1 53984388 53984436 -188679917 + L2 LINE L2 3136 3184 -88 312 221 154 19 chr1 53984556 53984660 -188679693 - MIR SINE MIR -34 228 111 305 286 122 56 chr1 53985719 53985932 -188678421 + MIR SINE MIR 22 248 -14 407 381 38 17 chr1 53986182 53986471 -188677882 + L2 LINE L2 2599 2893 -421 199 319 166 18 chr1 53986588 53986757 -188677596 + L3 LINE CR1 981 1174 -403 26 50 0 0 chr1 53987328 53987368 -188676985 + AT_rich Low_complexity Low_complexity 1 40 0 571 220 18 114 chr1 53987795 53988022 -188676331 + MIR SINE MIR 1 205 -57 1323 194 28 0 chr1 53988222 53988469 -188675884 + AluJo SINE Alu 25 278 -34 1103 18 58 12 chr1 53988475 53988646 -188675707 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 576 0 0 0 chr1 53989165 53989229 -188675124 + (TCTCC)n Simple_repeat Simple_repeat 1 64 0 276 359 55 32 chr1 53989305 53989525 -188674828 - L3 LINE CR1 -371 1206 982 208 0 62 0 chr1 53989748 53989780 -188674573 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 295 324 103 7 chr1 53990382 53990518 -188673835 - MIR3 SINE MIR -39 169 21 280 208 19 0 chr1 53991129 53991182 -188673171 + MIR SINE MIR 68 121 -87 1553 184 13 43 chr1 53991516 53991820 -188672533 + AluJo SINE Alu 8 302 -10 543 168 61 15 chr1 53992138 53992269 -188672084 - L1MB1 LINE L1 -2 6166 6030 1205 122 0 0 chr1 53992270 53992434 -188671919 - AluSp SINE Alu -16 297 134 4067 185 26 14 chr1 53992434 53993803 -188670550 - L1MB1 LINE L1 -131 6037 4650 250 317 12 12 chr1 53994534 53994616 -188669737 + L3 LINE CR1 1053 1134 -443 250 331 45 10 chr1 53994652 53994770 -188669583 + MIR SINE MIR 50 182 -26 3646 195 91 36 chr1 53994988 53995789 -188668564 + MER21B LTR ERV1 1 845 -18 374 346 142 31 chr1 53996298 53996685 -188667668 + L3 LINE CR1 1143 1572 -5 705 269 114 4 chr1 53996791 53997018 -188667335 + MIR SINE MIR 1 252 -10 1918 147 14 0 chr1 53997452 53997737 -188666616 + AluSx SINE Alu 1 289 -23 1088 320 38 45 chr1 53997748 53998432 -188665921 + L1PA15-16 LINE L1 55 733 -6116 409 333 0 6 chr1 53998557 53998713 -188665640 + L1PA15-16 LINE L1 1402 1556 -5293 395 211 0 135 chr1 53998705 53998949 -188665404 + L1PBb LINE L1 689 907 -5297 * 1683 208 0 7 chr1 53998960 53999258 -188665095 + AluJb SINE Alu 1 296 -16 3369 222 48 22 chr1 53999413 53999920 -188664433 + L1M2 LINE L1 1581 2073 -4776 2227 153 11 21 chr1 53999920 54000299 -188664054 - THE1C LTR MaLR 0 375 1 3369 222 48 22 chr1 54000299 54000947 -188663406 + L1M2 LINE L1 2073 2767 -4082 1461 223 3 17 chr1 54000947 54001247 -188663106 + AluJo SINE Alu 1 296 -16 419 185 0 43 chr1 54001409 54001501 -188662852 + AluJ/FRAM SINE Alu 218 305 -7 4845 207 28 16 chr1 54001502 54002256 -188662097 + L1M2 LINE L1 2777 3557 -3291 2216 95 0 20 chr1 54002256 54002560 -188661793 + AluY SINE Alu 1 298 -13 4845 207 28 16 chr1 54002560 54003214 -188661139 + L1M2 LINE L1 3557 4202 -2646 360 132 44 0 chr1 54003420 54003488 -188660865 + L1PA16 LINE L1 5327 5397 -768 2229 122 0 0 chr1 54003490 54003793 -188660560 + AluSq SINE Alu 1 303 -10 25 31 0 0 chr1 54003813 54003845 -188660508 + AT_rich Low_complexity Low_complexity 1 32 0 4656 143 10 0 chr1 54003853 54004631 -188659722 + L1PA16 LINE L1 5376 6161 -5 254 337 129 0 chr1 54004641 54004742 -188659611 - L2 LINE L2 0 3313 3200 268 393 74 15 chr1 54004933 54005068 -188659285 + L2 LINE L2 3122 3264 -8 182 315 306 0 chr1 54006173 54006284 -188658069 + MIR SINE MIR 20 164 -98 240 248 24 80 chr1 54006371 54006496 -188657857 - MIR SINE MIR -44 218 101 350 233 56 0 chr1 54006507 54006597 -188657756 + MIR SINE MIR 102 196 -66 207 194 0 0 chr1 54006706 54006742 -188657611 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 578 259 52 11 chr1 54006987 54007161 -188657192 - MER117 DNA MER1_type -4 193 13 372 284 63 39 chr1 54007246 54007373 -188656980 - MIR3 SINE MIR -49 159 30 311 270 40 71 chr1 54007571 54007697 -188656656 + L2 LINE L2 3149 3270 -2 424 305 117 30 chr1 54007807 54007895 -188656458 - L2 LINE L2 -179 3093 3014 2397 136 5 19 chr1 54007895 54008264 -188656089 - THE1B LTR MaLR 0 364 1 424 305 117 30 chr1 54008264 54008508 -188655845 - L2 LINE L2 -258 3014 2686 379 236 24 11 chr1 54009550 54009666 -188654687 - MIR SINE MIR -65 143 54 213 290 0 32 chr1 54010862 54010924 -188653429 + L2 LINE L2 3204 3263 -50 * 283 319 137 71 chr1 54010919 54011101 -188653252 + MIR SINE MIR 22 215 -47 469 298 115 24 chr1 54011152 54011360 -188652993 - MIR SINE MIR -32 230 4 267 195 390 0 chr1 54012033 54012110 -188652243 + MIR SINE MIR 33 139 -69 240 303 148 26 chr1 54012481 54012636 -188651717 - L2 LINE L2 -525 2789 2616 233 272 33 54 chr1 54013262 54013354 -188650999 + MIR SINE MIR 166 255 -7 300 284 53 0 chr1 54013554 54013649 -188650704 - MIR SINE MIR -102 160 61 598 234 31 15 chr1 54014480 54014649 -188649704 - MIR SINE MIR -54 208 38 342 254 180 16 chr1 54015518 54015640 -188648713 + MIR SINE MIR 2 143 -119 813 239 23 66 chr1 54015733 54015891 -188648462 - MIR SINE MIR -2 260 116 2558 55 13 0 chr1 54015891 54016200 -188648153 + AluSp SINE Alu 1 313 0 813 239 23 66 chr1 54016200 54016300 -188648053 - MIR SINE MIR -146 116 13 294 388 39 0 chr1 54016556 54016685 -188647668 - L2 LINE L2 -3 3269 3136 569 317 126 26 chr1 54016708 54016979 -188647374 + L2 LINE L2 2460 2757 -557 290 315 0 0 chr1 54017263 54017336 -188647017 - L2 LINE L2 0 3272 3200 264 271 21 73 chr1 54017353 54017449 -188646904 - L2 LINE L2 -42 3271 3181 327 244 146 0 chr1 54017495 54017577 -188646776 - L2 LINE L2 0 3272 3179 571 261 0 33 chr1 54017854 54018007 -188646346 - MIR SINE MIR -108 154 7 180 321 57 0 chr1 54018545 54018598 -188645755 + MIR SINE MIR 85 140 -68 257 301 65 21 chr1 54018888 54018981 -188645372 - MIR SINE MIR -96 112 16 180 152 0 0 chr1 54019258 54019291 -188645062 + GA-rich Low_complexity Low_complexity 1 33 0 290 130 0 19 chr1 54019918 54019972 -188644381 + (CAT)n Simple_repeat Simple_repeat 1 53 0 221 290 0 29 chr1 54020443 54020512 -188643841 - MIR3 SINE MIR -1 207 141 1043 354 62 12 chr1 54020721 54021207 -188643146 + L2 LINE L2 874 1383 -1931 1200 297 148 16 chr1 54021640 54022276 -188642077 + L2 LINE L2 1381 2100 -1214 827 248 118 27 chr1 54022271 54022602 -188641751 + L2 LINE L2 2936 3296 -17 * 557 349 35 19 chr1 54022632 54022890 -188641463 + MIR SINE MIR 1 262 0 2135 118 24 0 chr1 54022958 54023245 -188641108 - AluSp SINE Alu -19 294 1 256 388 71 33 chr1 54023268 54023567 -188640786 + L2 LINE L2 2717 3025 -247 269 387 101 12 chr1 54023744 54023912 -188640441 + L2 LINE L2 3089 3271 -1 463 310 115 22 chr1 54024018 54024244 -188640109 + MIR SINE MIR 3 249 -13 662 272 18 35 chr1 54024921 54025204 -188639149 + MLT1H LTR MaLR 1 278 -271 400 263 17 17 chr1 54025191 54025309 -188639044 + MLT1H LTR MaLR 426 543 -6 * 453 194 20 13 chr1 54025398 54025699 -188638654 + (TA)n Simple_repeat Simple_repeat 1 303 0 35 41 0 0 chr1 54025731 54025780 -188638573 + AT_rich Low_complexity Low_complexity 1 49 0 316 195 30 0 chr1 54025781 54025945 -188638408 + (TA)n Simple_repeat Simple_repeat 2 170 0 1580 113 0 4 chr1 54025946 54026186 -188638167 - L1PB3 LINE L1 -2 6152 5914 428 277 61 0 chr1 54026275 54026423 -188637930 + MIR SINE MIR 100 256 -6 830 140 55 37 chr1 54026443 54026607 -188637746 + L1MB5 LINE L1 6000 6166 -8 337 271 83 8 chr1 54027758 54027907 -188636446 + L1ME LINE L1 5576 5735 -429 1128 135 10 0 chr1 54027947 54028139 -188636214 + MER2 DNA MER2_type 24 217 -128 27 29 0 0 chr1 54028157 54028191 -188636162 + AT_rich Low_complexity Low_complexity 1 34 0 196 297 97 103 chr1 54028442 54028587 -188635766 + L2 LINE L2 2933 3076 -196 294 246 0 41 chr1 54030279 54030450 -188633903 + CT-rich Low_complexity Low_complexity 3 166 0 434 323 18 72 chr1 54030535 54030758 -188633595 - L3 LINE CR1 -32 1545 1335 219 264 19 0 chr1 54031376 54031429 -188632924 - MIR SINE MIR -71 137 84 318 300 68 132 chr1 54032435 54032745 -188631608 - L2 LINE L2 0 3272 2983 265 327 125 0 chr1 54032785 54032889 -188631464 + L2 LINE L2 3154 3270 -2 236 328 78 0 chr1 54033046 54033174 -188631179 - L1ME LINE L1 -422 5699 5562 552 317 49 27 chr1 54033199 54033423 -188630930 - MIR SINE MIR -6 256 28 186 133 0 0 chr1 54033626 54033656 -188630697 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 282 56 0 0 chr1 54033841 54033877 -188630476 + (CAT)n Simple_repeat Simple_repeat 1 36 0 490 278 118 0 chr1 54033918 54034087 -188630266 - MIR SINE MIR -1 261 73 303 234 19 75 chr1 54034095 54034202 -188630151 - MIR SINE MIR -92 170 70 12951 138 15 110 chr1 54034584 54037712 -188626641 + L1P LINE L1 12 2841 -3305 2218 55 13 0 chr1 54037704 54038011 -188626342 - L1P LINE L1 -949 5197 4887 * 6894 61 6 0 chr1 54038012 54039004 -188625349 + L1PA7 LINE L1 5158 6154 0 1298 234 112 75 chr1 54039223 54039741 -188624612 + MLT1F LTR MaLR 6 542 0 203 283 0 0 chr1 54040031 54040077 -188624276 + L2 LINE L2 3258 3303 -10 866 286 13 0 chr1 54040507 54040741 -188623612 + MIR SINE MIR 26 262 0 419 272 68 7 chr1 54040783 54040930 -188623423 + MIR SINE MIR 46 201 -61 22 0 0 0 chr1 54041637 54041659 -188622694 + AT_rich Low_complexity Low_complexity 1 22 0 477 317 18 18 chr1 54041692 54041856 -188622497 - MIR SINE MIR -3 259 96 225 322 67 11 chr1 54042030 54042120 -188622233 + MIR SINE MIR 12 106 -156 * 439 309 20 0 chr1 54042104 54042253 -188622100 - MIR SINE MIR -62 200 49 328 192 34 44 chr1 54042285 54042385 -188621968 - MIR3 SINE MIR -9 199 101 21 36 0 0 chr1 54042678 54042706 -188621647 + AT_rich Low_complexity Low_complexity 1 28 0 223 297 69 30 chr1 54043472 54043573 -188620780 + MER5A DNA MER1_type 63 167 -22 200 339 92 0 chr1 54043650 54043759 -188620594 + L2 LINE L2 3153 3271 -1 321 361 56 0 chr1 54043928 54044072 -188620281 + MIR SINE MIR 101 252 -10 470 239 31 25 chr1 54044251 54044410 -188619943 + MER103 DNA DNA 4 163 -3 375 170 0 85 chr1 54044587 54044681 -188619672 - U13 snRNA snRNA -2 102 17 245 179 0 18 chr1 54044760 54044802 -188619551 + (TA)n Simple_repeat Simple_repeat 1 43 -12 2420 77 0 3 chr1 54044802 54045102 -188619251 - AluY SINE Alu -12 299 1 245 179 0 18 chr1 54045102 54045115 -188619238 + (TA)n Simple_repeat Simple_repeat 43 55 0 318 276 68 91 chr1 54045268 54045489 -188618864 - L2 LINE L2 -160 3112 2897 265 254 165 29 chr1 54045515 54045787 -188618566 - L1ME4a LINE L1 -17 6104 5796 387 306 91 0 chr1 54047934 54048055 -188616298 - MIR SINE MIR -71 191 60 218 194 167 42 chr1 54048542 54048614 -188615739 + MIR SINE MIR 75 155 -107 330 291 31 12 chr1 54048745 54048858 -188615495 + MIR SINE MIR 3 116 -92 4611 106 31 16 chr1 54049683 54050393 -188613960 - L1MA2 LINE L1 0 6304 5584 632 303 64 8 chr1 54050424 54050658 -188613695 + MIR SINE MIR 14 260 -2 299 247 24 12 chr1 54050703 54050788 -188613565 - MIR SINE MIR -136 126 41 265 306 61 116 chr1 54051068 54051464 -188612889 + L2 LINE L2 2813 3186 -86 339 78 0 0 chr1 54051515 54051566 -188612787 + (TG)n Simple_repeat Simple_repeat 2 52 0 216 0 0 0 chr1 54051621 54051645 -188612708 + (TCCCC)n Simple_repeat Simple_repeat 3 26 0 183 298 0 0 chr1 54052018 54052065 -188612288 - MIR SINE MIR -111 151 105 479 305 53 127 chr1 54052459 54053029 -188611324 - L2 LINE L2 0 3272 2741 265 386 19 25 chr1 54053096 54053254 -188611099 + MIR SINE MIR 35 191 -71 31 42 0 42 chr1 54053266 54053337 -188611016 + AT_rich Low_complexity Low_complexity 1 68 0 630 258 45 27 chr1 54053500 54053733 -188610620 - MIR SINE MIR -11 251 15 1901 136 0 69 chr1 54053816 54054177 -188610176 - MER1B DNA MER1_type -2 337 2 393 345 64 36 chr1 54054267 54054487 -188609866 + L2 LINE L2 2678 2903 -411 244 250 36 0 chr1 54054743 54054799 -188609554 - MIR SINE MIR -183 79 22 207 100 0 0 chr1 54054812 54054842 -188609511 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 397 328 8 8 chr1 54055957 54056076 -188608277 + MIR SINE MIR 34 152 -110 241 188 0 125 chr1 54056342 54056406 -188607947 - MIR SINE MIR -70 192 137 212 231 19 0 chr1 54056646 54056698 -188607655 + L2 LINE L2 3220 3272 0 301 314 29 0 chr1 54056736 54056838 -188607515 + MIR SINE MIR 102 206 -56 2060 120 152 13 chr1 54056880 54057256 -188607097 + MSTA LTR MaLR 1 428 0 395 245 11 0 chr1 54057371 54057465 -188606888 - L2 LINE L2 -986 2328 2234 231 322 93 70 chr1 54057473 54057731 -188606622 - L2 LINE L2 -1348 1966 1703 195 300 0 0 chr1 54058290 54058340 -188606013 + L3 LINE CR1 1459 1508 -69 348 342 124 13 chr1 54058825 54059035 -188605318 + MIR SINE MIR 25 255 -7 22 35 0 0 chr1 54059595 54059624 -188604729 + AT_rich Low_complexity Low_complexity 1 29 0 241 298 176 0 chr1 54059706 54059837 -188604516 + MIR SINE MIR 89 242 -20 352 232 73 45 chr1 54060050 54060200 -188604153 - L1ME4a LINE L1 -3 6118 5961 3513 107 6 10 chr1 54060200 54060713 -188603640 + MER9 LTR ERVK 1 511 0 352 232 73 45 chr1 54060713 54060739 -188603614 - L1ME4a LINE L1 -160 5961 5937 579 199 121 7 chr1 54060932 54061073 -188603280 + MER11A LTR ERVK 418 574 -692 218 215 0 15 chr1 54061077 54061142 -188603211 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 3971 156 37 51 chr1 54061142 54062146 -188602207 + MER11C LTR ERVK 1 1071 0 196 130 43 0 chr1 54062147 54062193 -188602160 + (TA)n Simple_repeat Simple_repeat 2 49 0 384 322 86 20 chr1 54062304 54062655 -188601698 - L1ME4a LINE L1 -2105 5703 5330 5952 49 7 0 chr1 54062689 54063426 -188600927 - L1PA8 LINE L1 -14 6158 5417 727 333 149 17 chr1 54063720 54064377 -188599976 + L2 LINE L2 1783 2526 -788 2436 241 71 23 chr1 54064683 54065233 -188599120 - L1ME1 LINE L1 -5 6230 5708 7626 26 1 0 chr1 54065233 54066774 -188597579 + L1PA3 LINE L1 4611 6152 -3 180 97 0 0 chr1 54066780 54066811 -188597542 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2436 241 71 23 chr1 54066811 54067856 -188596497 - L1ME1 LINE L1 -531 5704 4552 1297 304 67 31 chr1 54067866 54068643 -188595710 - L1ME1 LINE L1 -5289 1107 282 1061 130 31 21 chr1 54068643 54068835 -188595518 - L1PB1 LINE L1 0 6151 5958 1297 304 67 31 chr1 54068835 54069086 -188595267 - L1ME1 LINE L1 -6113 283 42 240 301 125 22 chr1 54069455 54069591 -188594762 + MIR SINE MIR 63 212 -50 186 282 12 82 chr1 54069629 54069714 -188594639 + MIR SINE MIR 110 188 -74 409 253 171 0 chr1 54070249 54070407 -188593946 + MIR SINE MIR 12 196 -66 196 260 120 0 chr1 54071267 54071317 -188593036 - MIR3 SINE MIR -42 166 111 394 261 72 36 chr1 54071387 54071525 -188592828 - MIR SINE MIR -72 190 48 211 243 100 0 chr1 54072830 54072900 -188591453 + MIR SINE MIR 129 205 -57 2334 99 0 3 chr1 54072937 54073240 -188591113 + AluSg SINE Alu 1 302 -8 582 298 20 12 chr1 54073244 54073499 -188590854 - MIR SINE MIR -1 261 5 389 154 13 13 chr1 54073658 54073736 -188590617 - HsTC2 DNA Tc2 0 1898 1821 35023 92 14 10 chr1 54073747 54079864 -188584489 + L1PA6 LINE L1 11 6148 -6 893 222 71 38 chr1 54079868 54080233 -188584120 - HsTC2 DNA Tc2 -62 1836 1284 241 224 200 32 chr1 54080217 54080342 -188584011 - HsTC2 DNA Tc2 -1742 156 11 * 279 114 0 0 chr1 54080460 54080504 -188583849 + (TC)n Simple_repeat Simple_repeat 1 44 0 235 284 15 0 chr1 54080832 54080899 -188583454 + MIR3 SINE MIR 122 189 -19 13430 121 16 20 chr1 54080952 54082539 -188581814 + Tigger1 DNA MER2_type 1 1593 -825 1900 136 0 24 chr1 54082539 54082834 -188581519 + AluSx SINE Alu 3 290 -22 2427 78 3 7 chr1 54082839 54083145 -188581208 + AluY SINE Alu 1 305 -6 13430 121 16 20 chr1 54083145 54083770 -188580583 + Tigger1 DNA MER2_type 1597 2210 -208 185 261 22 0 chr1 54084253 54084299 -188580054 - L2 LINE L2 -3 3310 3264 258 309 128 55 chr1 54084367 54084677 -188579676 - L2 LINE L2 -100 3213 2868 2375 74 3 0 chr1 54084677 54084974 -188579379 + AluY SINE Alu 1 298 -13 258 309 128 55 chr1 54084974 54085045 -188579308 - L2 LINE L2 -445 2868 2804 200 342 13 13 chr1 54085157 54085233 -188579120 - L2 LINE L2 -1180 2134 2059 417 345 201 25 chr1 54085236 54086160 -188578193 - L2 LINE L2 -1479 1835 749 297 316 0 0 chr1 54086169 54086245 -188578108 - L2 LINE L2 -2 3311 3236 396 281 31 31 chr1 54086453 54086613 -188577740 - MIR SINE MIR 0 262 103 511 213 86 63 chr1 54087040 54087214 -188577139 - MIR3 SINE MIR -10 198 21 467 272 10 0 chr1 54087753 54087856 -188576497 + L2 LINE L2 3210 3313 0 378 0 0 0 chr1 54088351 54088393 -188575960 + (TC)n Simple_repeat Simple_repeat 1 42 0 243 215 0 0 chr1 54088393 54088458 -188575895 + (CA)n Simple_repeat Simple_repeat 2 66 0 1339 133 96 11 chr1 54088659 54088930 -188575423 - Tigger5 DNA MER2_type -6 2317 2024 694 233 22 118 chr1 54090241 54090512 -188573841 - MIR SINE MIR -10 252 8 465 294 35 18 chr1 54090563 54090733 -188573620 + MIR3 SINE MIR 30 202 -6 385 272 86 25 chr1 54091439 54091601 -188572752 + MIR SINE MIR 20 191 -71 390 325 23 95 chr1 54091737 54092042 -188572311 - L2 LINE L2 -86 3186 2904 269 217 89 100 chr1 54092484 54092664 -188571689 + MIR3 SINE MIR 24 201 -7 297 315 105 43 chr1 54093236 54093398 -188570955 + MIR SINE MIR 11 182 -80 311 78 20 0 chr1 54094024 54094075 -188570278 + (TC)n Simple_repeat Simple_repeat 1 52 0 264 292 0 15 chr1 54094468 54094533 -188569820 - MIR SINE MIR -194 68 5 1956 147 7 10 chr1 54094603 54094910 -188569443 + AluSx SINE Alu 1 306 -6 298 255 55 23 chr1 54094913 54095009 -188569344 - MIR3 SINE MIR -37 171 72 347 322 99 6 chr1 54095111 54095282 -188569071 + MIR SINE MIR 49 235 -27 1366 291 39 16 chr1 54095602 54096038 -188568315 + LTR16A LTR ERVL 1 446 -4 235 270 135 0 chr1 54096338 54096464 -188567889 - L2 LINE L2 -51 3262 3120 182 258 91 15 chr1 54096508 54096574 -188567779 + MIR SINE MIR 168 238 -24 * 435 370 6 6 chr1 54096571 54096736 -188567617 - MIR3 SINE MIR -41 167 3 311 311 93 50 chr1 54097891 54098052 -188566301 - MIR3 SINE MIR -38 170 3 1841 158 3 3 chr1 54098214 54098505 -188565848 + AluSx SINE Alu 6 296 -16 613 187 151 12 chr1 54098619 54098785 -188565568 - L1ME3A LINE L1 -17 6153 5965 502 222 78 0 chr1 54098786 54098953 -188565400 - L1ME3A LINE L1 -386 5784 5605 976 211 81 21 chr1 54098953 54099237 -188565116 - MLT1D LTR MaLR 0 505 205 11951 30 3 3 chr1 54099237 54101447 -188562906 - L1PA4 LINE L1 0 6155 3946 1837 38 0 0 chr1 54101447 54101683 -188562670 + L1PA4 LINE L1 3697 3932 -2214 978 152 12 0 chr1 54101692 54101857 -188562496 - MLT1D LTR MaLR -318 187 21 345 257 0 29 chr1 54101925 54102030 -188562323 - L1ME3A LINE L1 -605 5559 5458 497 318 14 0 chr1 54102142 54102290 -188562063 + L3 LINE CR1 1369 1518 -59 248 343 141 0 chr1 54102311 54102455 -188561898 + MIR SINE MIR 27 189 -73 350 331 16 16 chr1 54102566 54102690 -188561663 + L2 LINE L2 3171 3294 -19 376 336 63 7 chr1 54103281 54103424 -188560929 - L2 LINE L2 -1 3271 3121 194 310 200 10 chr1 54103495 54103595 -188560758 - MIR SINE MIR -34 228 110 309 87 28 0 chr1 54103830 54103886 -188560467 - MLT2B2 LTR ERVL 0 515 467 4817 200 15 18 chr1 54103892 54109139 -188555214 - L1PA15 LINE L1 0 7603 2318 282 373 20 13 chr1 54110285 54110588 -188553765 - L1PA15 LINE L1 -7276 305 1 1808 186 28 105 chr1 54110588 54110782 -188553571 - MLT2B1 LTR ERVL -55 465 258 441 0 0 0 chr1 54110782 54110831 -188553522 + (ATG)n Simple_repeat Simple_repeat 3 51 0 1808 186 28 105 chr1 54110831 54111140 -188553213 - MLT2B1 LTR ERVL -262 258 1 2130 157 22 0 chr1 54111428 54111784 -188552569 + THE1B LTR MaLR 1 364 0 10989 94 27 27 chr1 54111784 54113363 -188550990 + THE1B-int LTR MaLR 1 1580 0 2183 149 25 0 chr1 54113363 54113718 -188550635 + THE1B LTR MaLR 1 364 0 592 287 53 14 chr1 54114539 54114748 -188549605 - MIR SINE MIR -13 249 33 336 308 91 45 chr1 54115383 54115581 -188548772 + LTR33 LTR ERVL 9 215 -306 280 184 75 82 chr1 54115694 54115841 -188548512 + LTR33 LTR ERVL 366 511 -10 226 338 0 0 chr1 54115981 54116061 -188548292 + MIR SINE MIR 170 249 -13 208 378 84 0 chr1 54116169 54116288 -188548065 + L3 LINE CR1 1430 1558 -19 1899 138 53 61 chr1 54116389 54116767 -188547586 + THE1C LTR MaLR 1 375 0 196 279 49 0 chr1 54116883 54116944 -188547409 - L2 LINE L2 -9 3304 3241 1071 221 70 168 chr1 54117020 54117776 -188546577 - L2 LINE L2 -443 2871 2190 408 294 232 9 chr1 54117922 54118133 -188546220 + MIR SINE MIR 3 260 -2 22 35 0 0 chr1 54118776 54118805 -188545548 + AT_rich Low_complexity Low_complexity 1 29 0 181 294 20 0 chr1 54118814 54118865 -188545488 - L2 LINE L2 0 3313 3262 222 37 0 0 chr1 54118926 54118953 -188545400 + (CA)n Simple_repeat Simple_repeat 2 28 0 985 194 51 0 chr1 54119667 54119863 -188544490 - MER2 DNA MER2_type -139 206 1 297 350 80 20 chr1 54121302 54121502 -188542851 + MIR SINE MIR 28 239 -23 9913 138 19 84 chr1 54121518 54123686 -188540667 + L1P LINE L1 12 2038 -4108 1995 229 39 20 chr1 54174823 54175312 -188489041 - MLT1D LTR MaLR -7 498 1 2177 76 31 24 chr1 54175325 54175616 -188488737 - AluSx SINE Alu -19 293 1 943 295 106 23 chr1 54176183 54176664 -188487689 - LTR33 LTR ERVL 0 521 1 232 260 58 77 chr1 54176810 54176914 -188487439 + L2 LINE L2 3210 3311 -2 683 245 75 32 chr1 54177046 54177453 -188486900 - MLT1J LTR MaLR -44 467 1 305 336 26 17 chr1 54177453 54177569 -188486784 + MIR3 SINE MIR 43 159 -49 316 394 44 0 chr1 54178124 54178304 -188486049 - MIR SINE MIR -55 207 20 2540 210 89 20 chr1 54178888 54179884 -188484469 - L1ME1 LINE L1 -5 6161 5098 823 144 13 0 chr1 54179885 54180038 -188484315 - L1MC/D LINE L1 -798 5535 5381 * 895 208 25 4 chr1 54180032 54180268 -188484085 - L1ME1 LINE L1 -1045 5101 4861 5813 142 19 8 chr1 54180303 54181350 -188483003 - L1MC1 LINE L1 -1 6332 5274 383 293 35 91 chr1 54181407 54181605 -188482748 - L1M4 LINE L1 -5668 874 688 431 238 86 9 chr1 54181626 54181731 -188482622 - L2 LINE L2 -21 3292 3180 326 368 94 9 chr1 54181970 54182182 -188482171 - L2 LINE L2 -13 3259 3030 318 23 0 0 chr1 54182751 54182795 -188481558 - L1PA4 LINE L1 0 6155 6112 205 296 37 37 chr1 54182903 54183011 -188481342 - L3 LINE CR1 -223 1354 1247 1227 195 33 17 chr1 54183024 54183265 -188481088 + AluJo SINE Alu 54 298 -14 774 291 32 58 chr1 54183270 54183583 -188480770 - L3 LINE CR1 -315 1262 958 25 0 0 0 chr1 54183617 54183642 -188480711 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr1 54183668 54183697 -188480656 + AT_rich Low_complexity Low_complexity 1 29 0 1484 139 16 0 chr1 54183700 54183951 -188480402 - L1PA16 LINE L1 -3 6163 5909 328 208 13 0 chr1 54183951 54184028 -188480325 - L1MD3 LINE L1 -7 7988 7911 1455 121 33 0 chr1 54184028 54184083 -188480270 + MER50 LTR ERV1 1 53 -681 180 0 0 0 chr1 54184083 54184103 -188480250 + (CA)n Simple_repeat Simple_repeat 2 21 0 1455 121 33 0 chr1 54184103 54184287 -188480066 + MER50 LTR ERV1 53 248 -486 * 1690 144 75 19 chr1 54184281 54184601 -188479752 + MER50 LTR ERV1 397 734 0 892 150 29 6 chr1 54184601 54184774 -188479579 - L1MD3 LINE L1 -81 7914 7738 543 287 71 74 chr1 54184792 54184935 -188479418 - L3 LINE CR1 -742 835 693 2586 102 13 8 chr1 54184935 54185308 -188479045 - THE1C LTR MaLR 0 375 1 543 287 71 74 chr1 54185308 54185460 -188478893 - L3 LINE CR1 -884 693 541 216 281 0 0 chr1 54185610 54185667 -188478686 - L3 LINE CR1 -1073 504 448 180 111 0 0 chr1 54185995 54186022 -188478331 + (A)n Simple_repeat Simple_repeat 1 27 0 246 304 127 38 chr1 54186897 54187134 -188477219 + L2 LINE L2 2372 2629 -685 445 320 37 53 chr1 54187330 54187574 -188476779 + L2 LINE L2 481 720 -2594 451 367 35 32 chr1 54187592 54188040 -188476313 + L2 LINE L2 2771 3205 -67 995 178 0 18 chr1 54188166 54188385 -188475968 - L1M4 LINE L1 -743 6214 6000 683 84 252 0 chr1 54188387 54188518 -188475835 - L1MA7 LINE L1 0 6291 6128 1267 180 10 0 chr1 54188540 54188746 -188475607 + AluJb SINE Alu 96 303 -9 792 141 6 55 chr1 54188746 54188909 -188475444 - L1MA7 LINE L1 -156 6135 5981 282 202 0 20 chr1 54188906 54189005 -188475348 - L1M4 LINE L1 -944 6013 5917 * 1722 154 16 52 chr1 54189026 54189068 -188475285 - MLT1A1 LTR MaLR -15 350 308 1862 150 46 15 chr1 54189068 54189395 -188474958 - MER1B DNA MER1_type 0 337 1 1722 154 16 52 chr1 54189395 54189715 -188474638 - MLT1A1 LTR MaLR -57 308 1 5043 226 49 9 chr1 54189717 54191127 -188473226 - L1M4 LINE L1 -1048 5909 4444 980 236 15 0 chr1 54191131 54191394 -188472959 - L1M4 LINE L1 -4775 2184 1918 2896 276 28 23 chr1 54191425 54192325 -188472028 - L1M4 LINE L1 -5753 1106 203 396 216 18 54 chr1 54192334 54192368 -188471985 - L1M4 LINE L1 -6749 110 76 2269 113 0 7 chr1 54192368 54192669 -188471684 + AluSq SINE Alu 1 299 -14 396 216 18 54 chr1 54192669 54192745 -188471608 - L1M4 LINE L1 -6783 76 4 264 415 49 0 chr1 54192950 54193092 -188471261 - L2 LINE L2 -2 3270 3122 439 231 35 14 chr1 54193758 54193901 -188470452 + L1MB8 LINE L1 6033 6178 0 22 35 0 0 chr1 54194025 54194054 -188470299 + AT_rich Low_complexity Low_complexity 1 29 0 305 306 24 32 chr1 54194490 54194614 -188469739 - MIR3 SINE MIR -79 129 7 442 233 11 0 chr1 54194730 54194820 -188469533 + MIR SINE MIR 42 132 -130 807 242 39 0 chr1 54195150 54195328 -188469025 - MIR SINE MIR -6 256 72 273 298 112 56 chr1 54196117 54196278 -188468075 + MIR SINE MIR 92 261 -1 318 328 46 52 chr1 54196306 54196480 -188467873 - MIR3 SINE MIR -1 207 35 450 303 61 18 chr1 54196797 54197026 -188467327 + MIR SINE MIR 10 247 -15 1371 240 19 25 chr1 54198124 54198491 -188465862 - MLT1A1 LTR MaLR 0 365 1 420 274 135 43 chr1 54198492 54198700 -188465653 - MIR SINE MIR -28 234 8 225 359 69 31 chr1 54199662 54199821 -188464532 + MIR SINE MIR 23 187 -75 714 267 82 52 chr1 54199831 54200063 -188464290 - MIR SINE MIR -6 256 18 393 313 60 12 chr1 54200604 54200770 -188463583 - L3 LINE CR1 -43 1534 1361 430 325 177 19 chr1 54200853 54201170 -188463183 - L2 LINE L2 -534 2780 2414 372 288 68 15 chr1 54202082 54202214 -188462139 - L2 LINE L2 0 3313 3175 203 241 188 27 chr1 54202317 54202429 -188461924 - MIR SINE MIR -56 206 77 236 322 0 44 chr1 54202846 54202936 -188461417 + MIR SINE MIR 38 123 -85 387 327 88 40 chr1 54203712 54203938 -188460415 - MIR SINE MIR -6 256 20 2482 50 0 7 chr1 54204107 54204408 -188459945 + AluY SINE Alu 1 299 -12 389 265 31 0 chr1 54204942 54205040 -188459313 - MER94 DNA DNA -29 105 5 405 226 202 8 chr1 54205363 54205487 -188458866 - MIR SINE MIR -112 150 3 204 326 179 11 chr1 54206015 54206110 -188458243 - MIR SINE MIR -80 128 18 1464 169 99 37 chr1 54206652 54207055 -188457298 - MSTC LTR MaLR 0 428 1 225 267 0 0 chr1 54207374 54207419 -188456934 + L2 LINE L2 3216 3260 -12 229 127 0 48 chr1 54207475 54207538 -188456815 + (TCTCTG)n Simple_repeat Simple_repeat 2 61 0 41076 34 21 1 chr1 54207786 54213818 -188450535 - L1PA3 LINE L1 0 6155 1 2210 85 4 0 chr1 54213819 54214091 -188450262 - AluSg SINE Alu -19 291 19 2375 150 100 29 chr1 54214091 54214579 -188449774 - MER44D DNA MER2_type -27 578 1 578 339 25 53 chr1 54215047 54215330 -188449023 + L2 LINE L2 2992 3266 -6 182 304 0 0 chr1 54216288 54216334 -188448019 + L2 LINE L2 3251 3296 -17 31 0 0 0 chr1 54216379 54216410 -188447943 + AT_rich Low_complexity Low_complexity 1 31 0 2126 129 0 0 chr1 54216421 54216715 -188447638 - AluSq SINE Alu -19 294 1 506 371 20 5 chr1 54217771 54217973 -188446380 - MIR SINE MIR -12 250 46 288 318 180 11 chr1 54218012 54218201 -188446152 - L2 LINE L2 -541 2773 2553 246 214 54 0 chr1 54218422 54218478 -188445875 - MIR SINE MIR -114 148 90 190 299 60 15 chr1 54219114 54219181 -188445172 - MIR3 SINE MIR -37 171 102 321 318 91 45 chr1 54219341 54219473 -188444880 - L2 LINE L2 -14 3258 3121 922 237 56 13 chr1 54219551 54219783 -188444570 + MIR SINE MIR 7 248 -14 366 363 87 14 chr1 54219793 54220134 -188444219 - L2 LINE L2 -252 3020 2656 699 365 35 6 chr1 54220623 54220968 -188443385 - L3 LINE CR1 -11 1566 1212 305 319 76 45 chr1 54221010 54221432 -188442921 - MLT1J1 LTR MaLR -35 476 1 606 341 40 9 chr1 54222009 54222235 -188442118 - MIR SINE MIR -12 250 18 216 403 0 0 chr1 54222292 54222359 -188441994 - L2 LINE L2 -6 3266 3200 2982 300 132 26 chr1 54222373 54222608 -188441745 + L2 LINE L2 1372 1581 -1732 2137 125 0 0 chr1 54222608 54222897 -188441456 + AluSx SINE Alu 1 289 -23 2982 300 132 26 chr1 54222897 54222974 -188441379 + L2 LINE L2 1581 1648 -1665 456 19 0 0 chr1 54222974 54223027 -188441326 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2982 300 132 26 chr1 54223027 54224450 -188439903 + L2 LINE L2 1648 3307 -6 359 373 48 20 chr1 54225472 54225724 -188438629 - L2 LINE L2 -190 3082 2824 19212 137 41 24 chr1 54225747 54229197 -188435156 + L1MA3 LINE L1 10 3520 -4045 6797 108 9 16 chr1 54229194 54230602 -188433751 + L1MA3 LINE L1 6324 7724 0 * 236 209 64 118 chr1 54230739 54230849 -188433504 + MIR3 SINE MIR 88 191 -17 302 336 45 36 chr1 54231429 54231539 -188432814 - L2 LINE L2 -30 3242 3132 290 256 18 166 chr1 54231751 54231974 -188432379 - L2 LINE L2 -218 3054 2865 277 231 0 13 chr1 54231974 54232052 -188432301 - L1MEc LINE L1 -1836 4379 4303 4578 228 87 62 chr1 54232059 54234812 -188429541 - L1MEc LINE L1 -3394 2821 44 482 278 0 40 chr1 54235488 54235614 -188428739 + MIR3 SINE MIR 42 162 -46 516 240 47 53 chr1 54236002 54236152 -188428201 - MIR SINE MIR -65 197 49 6120 30 13 8 chr1 54236882 54237626 -188426727 + L1PA4 LINE L1 5408 6155 0 184 338 92 44 chr1 54237647 54237875 -188426478 + L2 LINE L2 2819 3057 -215 2062 108 10 36 chr1 54237922 54238228 -188426125 - AluSq SINE Alu -15 298 1 495 284 24 100 chr1 54238293 54238543 -188425810 + MIR SINE MIR 31 261 -1 549 328 21 42 chr1 54238808 54239049 -188425304 + L3 LINE CR1 1320 1555 -22 243 0 0 0 chr1 54239049 54239076 -188425277 + (TA)n Simple_repeat Simple_repeat 1 27 0 628 234 0 0 chr1 54239117 54239241 -188425112 - FLAM_A SINE Alu -9 124 1 268 157 0 0 chr1 54239853 54239905 -188424448 + L1MB1 LINE L1 6122 6167 -1 407 269 28 69 chr1 54240350 54240495 -188423858 + L2 LINE L2 3134 3272 0 568 223 297 14 chr1 54241032 54241578 -188422775 - LTR50 LTR ERVL -4 791 1 862 330 72 21 chr1 54241872 54242500 -188421853 - MERVL LTR ERVL -290 5195 4536 422 274 32 16 chr1 54242516 54242640 -188421713 - MIR SINE MIR -115 147 22 1186 261 39 46 chr1 54242702 54243135 -188421218 - L2 LINE L2 -2 3311 2882 1076 268 45 19 chr1 54243146 54243460 -188420893 - MERVL LTR ERVL -1123 4531 4210 2941 316 89 18 chr1 54243647 54245168 -188419185 - MERVL LTR ERVL -1754 4010 2382 21 0 0 0 chr1 54245217 54245238 -188419115 + AT_rich Low_complexity Low_complexity 1 21 0 1047 256 52 43 chr1 54245351 54245811 -188418542 + LTR16B LTR ERVL 1 464 0 373 273 173 7 chr1 54247223 54247362 -188416991 + MIR SINE MIR 88 249 -13 217 311 178 0 chr1 54247656 54247746 -188416607 - MIR3 SINE MIR -21 187 82 803 241 101 63 chr1 54247988 54248353 -188416000 - L1ME2 LINE L1 -10 6154 5776 2194 135 3 15 chr1 54248356 54248696 -188415657 - MER1B DNA MER1_type -1 336 1 490 234 54 9 chr1 54248721 54248832 -188415521 + MIR SINE MIR 58 173 -89 958 260 65 0 chr1 54249659 54249905 -188414448 + MIR SINE MIR 1 262 0 230 302 0 0 chr1 54249939 54250002 -188414351 - MIR SINE MIR -50 212 150 254 233 33 0 chr1 54250150 54250210 -188414143 + GA-rich Low_complexity Low_complexity 4 65 0 196 295 19 48 chr1 54250238 54250343 -188414010 - MIR SINE MIR -43 219 118 258 154 0 0 chr1 54250682 54250721 -188413632 + polypurine Low_complexity Low_complexity 3 41 0 441 310 26 0 chr1 54251074 54251190 -188413163 + MIR3 SINE MIR 37 155 -53 915 288 37 80 chr1 54251240 54251759 -188412594 + L2 LINE L2 2531 3025 -288 204 133 12 108 chr1 54251761 54251844 -188412509 + A-rich Low_complexity Low_complexity 5 79 0 213 354 63 34 chr1 54252002 54252177 -188412176 + L2 LINE L2 2872 3051 -221 185 132 26 0 chr1 54252435 54252473 -188411880 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 312 83 0 0 chr1 54252711 54252759 -188411594 + (TG)n Simple_repeat Simple_repeat 2 49 0 395 332 78 24 chr1 54253642 54253847 -188410506 - MIR SINE MIR -27 235 20 196 333 34 86 chr1 54254267 54254501 -188409852 + L2 LINE L2 2838 3059 -213 225 227 0 0 chr1 54254647 54254691 -188409662 - L3 LINE CR1 -2 1575 1532 352 336 88 31 chr1 54254796 54255022 -188409331 + MIR SINE MIR 3 241 -21 231 61 0 0 chr1 54255033 54255066 -188409287 + (TATG)n Simple_repeat Simple_repeat 2 34 0 234 250 0 0 chr1 54255141 54255189 -188409164 + MIR SINE MIR 65 112 -150 299 237 0 0 chr1 54255845 54255904 -188408449 + L2 LINE L2 3214 3272 0 1345 201 178 23 chr1 54256422 54256765 -188407588 + MSTD LTR MaLR 1 396 0 430 268 70 7 chr1 54256784 54256926 -188407427 - MIR SINE MIR 0 262 112 378 286 154 11 chr1 54257434 54257609 -188406744 - MIR SINE MIR -16 246 47 425 19 19 0 chr1 54257643 54257697 -188406656 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 311 261 135 9 chr1 54257742 54257853 -188406500 + MER5B DNA MER1_type 3 127 -51 402 74 0 0 chr1 54258657 54258711 -188405642 + (CA)n Simple_repeat Simple_repeat 2 55 0 2618 264 89 61 chr1 54259101 54260415 -188403938 + L2 LINE L2 1958 3309 -4 256 377 85 0 chr1 54260451 54260687 -188403666 - MIR SINE MIR -1 261 6 337 321 93 43 chr1 54260712 54260874 -188403479 - L2 LINE L2 -4 3268 3099 555 196 98 0 chr1 54260902 54261004 -188403349 - MER45A DNA AcHobo -29 149 38 532 248 43 0 chr1 54261270 54261387 -188402966 - MLT1J2 LTR MaLR -264 186 65 207 320 54 34 chr1 54261479 54261626 -188402727 - L2 LINE L2 -327 2986 2837 1077 52 0 22 chr1 54261634 54261769 -188402584 + AluY SINE Alu 1 132 -179 341 292 119 27 chr1 54261809 54261946 -188402407 - L2 LINE L2 -482 2832 2666 200 35 35 0 chr1 54261946 54261975 -188402378 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 341 292 119 27 chr1 54261975 54262056 -188402297 - L2 LINE L2 -648 2666 2594 375 272 160 63 chr1 54262172 54262584 -188401769 + L1ME3A LINE L1 5486 5937 -233 29 60 0 0 chr1 54262825 54262875 -188401478 + AT_rich Low_complexity Low_complexity 1 50 0 241 385 41 30 chr1 54262981 54263150 -188401203 + L2 LINE L2 3102 3272 0 239 297 90 36 chr1 54263954 54264065 -188400288 - MIR SINE MIR -111 151 35 846 217 0 22 chr1 54264110 54264290 -188400063 + FRAM SINE Alu 1 176 0 298 324 18 9 chr1 54264734 54264845 -188399508 + MIR SINE MIR 46 157 -105 242 167 0 0 chr1 54266146 54266188 -188398165 - L2 LINE L2 -17 3255 3214 1084 263 85 61 chr1 54266231 54266703 -188397650 + LTR67 LTR ERVL 61 543 -14 202 286 133 0 chr1 54266717 54266815 -188397538 - MIR SINE MIR -65 197 87 1633 125 27 0 chr1 54266815 54267039 -188397314 + MER30 DNA MER1_type 1 230 0 184 297 27 40 chr1 54267112 54267186 -188397167 - L2 LINE L2 -1880 1434 1362 510 261 38 114 chr1 54267235 54267576 -188396777 + L2 LINE L2 2999 3313 0 255 338 0 50 chr1 54267605 54267744 -188396609 + MARNA DNA Mariner 82 213 -373 365 368 30 12 chr1 54267744 54267910 -188396443 + MIR SINE MIR 21 189 -73 1806 193 13 37 chr1 54268000 54268374 -188395979 - MLT1A1 LTR MaLR 0 365 1 460 270 13 46 chr1 54268621 54268773 -188395580 + MIR3 SINE MIR 23 169 -39 193 247 55 41 chr1 54269199 54269272 -188395081 - L2 LINE L2 -10 3303 3230 466 194 52 67 chr1 54269323 54269394 -188394959 + MIR SINE MIR 77 148 -114 2009 120 3 11 chr1 54269394 54269698 -188394655 + AluSg SINE Alu 1 302 0 466 194 52 67 chr1 54269698 54269759 -188394594 + MIR SINE MIR 148 208 -54 198 254 30 30 chr1 54270989 54271056 -188393297 + L2 LINE L2 3244 3310 -3 360 291 23 58 chr1 54271536 54271708 -188392645 + MIR3 SINE MIR 17 182 -26 739 99 10 0 chr1 54271803 54271904 -188392449 + AluY SINE Alu 203 304 -7 434 327 183 18 chr1 54272385 54272783 -188391570 - L2 LINE L2 -1 3312 2849 435 256 114 66 chr1 54272939 54273150 -188391203 + L2 LINE L2 3027 3247 -25 363 343 35 18 chr1 54273202 54273371 -188390982 - MIR3 SINE MIR -21 187 16 241 324 62 41 chr1 54273460 54273605 -188390748 - L2 LINE L2 -1 3271 3124 1001 193 149 4 chr1 54273801 54274029 -188390324 - MIR SINE MIR 0 262 2 299 299 70 57 chr1 54274146 54274303 -188390050 - MIR SINE MIR -17 245 87 332 221 267 0 chr1 54274432 54274518 -188389835 + MIR SINE MIR 41 149 -113 384 243 22 20 chr1 54275208 54275344 -188389009 + MIR3 SINE MIR 66 201 -7 195 69 0 0 chr1 54275445 54275474 -188388879 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 299 286 29 128 chr1 54275477 54275750 -188388603 + L2 LINE L2 2992 3237 -35 244 186 0 34 chr1 54275956 54276005 -188388348 + (CCA)n Simple_repeat Simple_repeat 2 50 -8 225 0 0 0 chr1 54276005 54276030 -188388323 + (CAA)n Simple_repeat Simple_repeat 3 27 0 244 186 0 34 chr1 54276030 54276039 -188388314 + (CCA)n Simple_repeat Simple_repeat 50 58 0 320 271 31 108 chr1 54276110 54276239 -188388114 + L2 LINE L2 3138 3256 -16 238 280 40 56 chr1 54276541 54276666 -188387687 + L2 LINE L2 3138 3260 -12 406 301 70 42 chr1 54276866 54277087 -188387266 - MIR SINE MIR -29 233 2 212 298 53 64 chr1 54277090 54277184 -188387169 - L2 LINE L2 -1 3271 3179 757 283 25 12 chr1 54277224 54277464 -188386889 - MIR SINE MIR -6 256 14 311 240 206 0 chr1 54277920 54278066 -188386287 + MIR SINE MIR 31 206 -56 234 258 135 0 chr1 54279309 54279398 -188384955 + MIR SINE MIR 35 135 -73 1986 94 0 4 chr1 54279399 54279655 -188384698 - AluSg SINE Alu -15 295 41 1373 156 28 0 chr1 54279751 54279963 -188384390 - MER20 DNA MER1_type 0 219 2 349 303 115 0 chr1 54280545 54280667 -188383686 - L2 LINE L2 -3 3269 3134 552 296 106 22 chr1 54280683 54280909 -188383444 + MIR SINE MIR 3 247 -15 782 280 109 31 chr1 54281198 54281555 -188382798 + L2 LINE L2 2927 3311 -2 660 274 87 9 chr1 54281669 54281888 -188382465 - MIR SINE MIR -6 256 21 292 310 11 0 chr1 54282517 54282604 -188381749 + MIR SINE MIR 57 144 -118 378 352 47 21 chr1 54282616 54282809 -188381544 + MIR3 SINE MIR 4 201 -7 272 263 88 0 chr1 54282916 54282996 -188381357 + MIR SINE MIR 60 146 -62 1274 180 105 11 chr1 54283519 54283786 -188380567 - AluJo SINE Alu -20 292 1 2386 102 0 3 chr1 54283804 54284117 -188380236 - AluSx SINE Alu 0 312 1 490 301 84 8 chr1 54285064 54285303 -188379050 - L2 LINE L2 -800 2514 2258 369 250 188 0 chr1 54285336 54285448 -188378905 + MER94 DNA DNA 1 133 -1 334 311 38 44 chr1 54285997 54286180 -188378173 - MIR SINE MIR 0 262 81 716 302 90 12 chr1 54286267 54286512 -188377841 + L3 LINE CR1 1282 1545 -32 236 230 0 40 chr1 54286530 54286604 -188377749 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 305 280 10 10 chr1 54286605 54286705 -188377648 - MIR SINE MIR -59 203 104 222 62 0 0 chr1 54286930 54286962 -188377391 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 482 220 96 62 chr1 54287918 54287984 -188376369 - L2 LINE L2 -137 3176 3114 1528 200 40 3 chr1 54287984 54288284 -188376069 + AluJb SINE Alu 1 311 -1 482 220 96 62 chr1 54288284 54288426 -188375927 - L2 LINE L2 -199 3114 2961 246 213 0 0 chr1 54288855 54288902 -188375451 + MIR SINE MIR 60 106 -102 243 103 0 0 chr1 54288957 54288996 -188375357 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 350 272 11 33 chr1 54289123 54289215 -188375138 - MIR3 SINE MIR -44 164 75 460 316 114 44 chr1 54290111 54290667 -188373686 - L2 LINE L2 -39 3233 2651 435 270 30 22 chr1 54291067 54291217 -188373136 - MIR SINE MIR -68 140 7 183 263 53 40 chr1 54291959 54292035 -188372318 + MIR SINE MIR 25 101 -161 2703 108 14 14 chr1 54292279 54292641 -188371712 + THE1B LTR MaLR 3 364 0 258 261 0 0 chr1 54292895 54293006 -188371347 + (CTA)n Simple_repeat Simple_repeat 1 111 0 1848 131 3 31 chr1 54293205 54293548 -188370805 + AluSx SINE Alu 1 335 0 1902 161 32 40 chr1 54294031 54294160 -188370193 - MER2 DNA MER2_type -1 344 215 1764 93 18 0 chr1 54294160 54294385 -188369968 + MER30 DNA MER1_type 1 229 -1 1902 161 32 40 chr1 54294385 54294602 -188369751 - MER2 DNA MER2_type -130 215 1 240 35 0 0 chr1 54294618 54294647 -188369706 + (TG)n Simple_repeat Simple_repeat 2 30 0 580 183 380 0 chr1 54294660 54294802 -188369551 + Tigger5 DNA MER2_type 1 196 -2127 366 190 13 51 chr1 54294800 54294879 -188369474 + Tigger5 DNA MER2_type 2247 2322 -1 * 287 304 101 38 chr1 54294929 54295087 -188369266 + MLT1K LTR MaLR 33 200 -388 247 319 0 0 chr1 54295271 54295340 -188369013 - L2 LINE L2 -18 3254 3186 351 0 0 0 chr1 54295474 54295513 -188368840 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 437 79 0 92 chr1 54295513 54295589 -188368764 - L1PA16 LINE L1 -20 6146 6078 783 176 57 57 chr1 54295589 54295799 -188368554 - Zaphod DNA AcHobo -83 3948 3739 363 367 7 14 chr1 54296481 54296628 -188367725 + MIR3 SINE MIR 9 154 -54 39 38 0 0 chr1 54296668 54296721 -188367632 + AT_rich Low_complexity Low_complexity 1 53 0 292 304 154 0 chr1 54296726 54296986 -188367367 - L1ME4a LINE L1 -24 6097 5798 261 270 16 16 chr1 54297184 54297247 -188367106 + L2 LINE L2 3208 3270 -2 249 353 9 9 chr1 54297824 54297940 -188366413 - MIR SINE MIR -48 214 99 457 254 21 49 chr1 54297959 54298101 -188366252 + MIR SINE MIR 10 147 -115 246 286 52 13 chr1 54298189 54298266 -188366087 - L2 LINE L2 -40 3232 3153 206 315 272 0 chr1 54298391 54298483 -188365870 + L2 LINE L2 3116 3232 -40 362 324 27 0 chr1 54299130 54299241 -188365112 + MIR SINE MIR 85 198 -64 323 228 12 140 chr1 54299439 54299610 -188364743 - MIR3 SINE MIR 0 208 60 1303 194 0 35 chr1 54299966 54300193 -188364160 + MER20 DNA MER1_type 1 219 0 182 171 0 73 chr1 54300468 54300509 -188363844 + MER5A DNA MER1_type 2 39 -150 1721 168 85 12 chr1 54301012 54301352 -188363001 - MLT1A1 LTR MaLR 0 365 1 206 146 42 0 chr1 54301478 54301526 -188362827 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 431 291 24 31 chr1 54301995 54302122 -188362231 + MIR SINE MIR 60 185 -77 57 47 0 0 chr1 54302485 54302570 -188361783 + AT_rich Low_complexity Low_complexity 1 85 0 26 82 0 0 chr1 54302797 54302858 -188361495 + AT_rich Low_complexity Low_complexity 1 61 0 355 298 149 0 chr1 54303634 54303748 -188360605 - L2 LINE L2 -2 3270 3140 29 28 0 0 chr1 54303889 54303925 -188360428 + AT_rich Low_complexity Low_complexity 1 36 0 920 186 120 0 chr1 54304040 54304207 -188360146 - MER5A DNA MER1_type 0 189 3 440 301 100 105 chr1 54304218 54304647 -188359706 - L2 LINE L2 -20 3252 2826 394 231 19 37 chr1 54304789 54304897 -188359456 - MER5B DNA MER1_type -72 106 1 972 316 122 25 chr1 54305294 54305942 -188358411 + L2 LINE L2 1684 2394 -920 3537 114 8 6 chr1 54305989 54306479 -188357874 - MER1A DNA MER1_type 0 529 39 372 344 114 18 chr1 54306636 54306960 -188357393 + L2 LINE L2 2716 3069 -203 816 162 54 7 chr1 54307043 54307191 -188357162 - LTR32 LTR ERVL 0 471 317 1501 192 38 52 chr1 54307335 54307678 -188356675 - LTR32 LTR ERVL -119 352 15 276 250 47 0 chr1 54307723 54307787 -188356566 + L2 LINE L2 3190 3256 -16 195 100 0 0 chr1 54307793 54307823 -188356530 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 392 284 73 64 chr1 54308100 54308209 -188356144 - MIR SINE MIR -1 261 148 2553 56 0 10 chr1 54308209 54308513 -188355840 - AluY SINE Alu -10 301 1 392 284 73 64 chr1 54308513 54308607 -188355746 - MIR SINE MIR -114 148 56 297 298 60 0 chr1 54308601 54308685 -188355668 + L2 LINE L2 3159 3247 -25 * 483 285 75 23 chr1 54311080 54311294 -188353059 + MIR SINE MIR 22 246 -16 209 304 152 16 chr1 54312487 54312612 -188351741 - MIR SINE MIR -65 197 56 231 296 20 31 chr1 54312741 54312839 -188351514 - MIR SINE MIR -87 175 79 337 221 53 21 chr1 54313364 54313459 -188350894 + L2 LINE L2 3182 3279 -34 765 278 57 41 chr1 54313593 54313910 -188350443 + L2 LINE L2 2992 3313 0 522 225 67 0 chr1 54314101 54314221 -188350132 + MIR SINE MIR 92 219 -43 717 269 101 4 chr1 54315032 54315270 -188349083 - MIR SINE MIR 0 262 2 2080 126 18 0 chr1 54315498 54315784 -188348569 - AluSq SINE Alu -22 291 1 257 269 96 10 chr1 54316018 54316122 -188348231 + L2 LINE L2 3159 3271 -1 350 391 58 25 chr1 54316714 54317113 -188347240 - L2 LINE L2 -341 2973 2562 3399 195 31 15 chr1 54317449 54318761 -188345592 - L1ME1 LINE L1 -226 5940 4601 973 279 63 53 chr1 54318761 54319385 -188344968 + L2 LINE L2 2690 3312 -1 21 0 0 0 chr1 54319889 54319910 -188344443 + GC_rich Low_complexity Low_complexity 1 21 0 4423 136 33 31 chr1 54320311 54321006 -188343347 + L1MA4 LINE L1 4639 5339 -961 2487 73 0 10 chr1 54321006 54321309 -188343044 + AluSc SINE Alu 3 302 -7 4423 136 33 31 chr1 54321309 54321994 -188342359 + L1MA4 LINE L1 5339 6021 -279 250 253 10 20 chr1 54321968 54322067 -188342286 + L1MB3 LINE L1 6060 6157 -26 * 222 341 60 19 chr1 54322480 54322634 -188341719 + MIR SINE MIR 36 147 -61 331 299 88 7 chr1 54322664 54322801 -188341552 - MIR SINE MIR -27 235 88 201 282 97 10 chr1 54323253 54323356 -188340997 + MIR3 SINE MIR 56 167 -41 362 228 30 20 chr1 54324481 54324582 -188339771 - L1ME LINE L1 -422 5699 5598 195 254 28 42 chr1 54324683 54324743 -188339610 + MIR3 SINE MIR 91 151 -57 1630 201 19 58 chr1 54324743 54324963 -188339390 - MLT1A1 LTR MaLR -2 363 163 2310 74 0 27 chr1 54324963 54325287 -188339066 - AluY SINE Alu 0 311 1 1630 201 19 58 chr1 54325287 54325444 -188338909 - MLT1A1 LTR MaLR -202 163 1 380 256 22 0 chr1 54325709 54325799 -188338554 + MLT1C LTR MaLR 1 92 -375 425 88 0 0 chr1 54325801 54325858 -188338495 + MER4A-int LTR ERV1 6540 6596 -2 550 116 32 11 chr1 54325868 54325963 -188338390 + MER4A LTR ERV1 2 98 -566 1508 124 169 121 chr1 54325963 54326318 -188338035 + MER4A LTR ERV1 261 632 -32 1466 216 22 62 chr1 54326331 54326733 -188337620 + MLT1C LTR MaLR 82 467 0 195 386 10 30 chr1 54326810 54326911 -188337442 + MIR SINE MIR 1 99 -163 345 336 78 0 chr1 54327174 54327290 -188337063 + L2 LINE L2 3139 3263 -9 223 226 130 70 chr1 54328275 54328390 -188335963 - MIR SINE MIR -42 220 99 231 36 0 0 chr1 54328681 54328709 -188335644 + (CA)n Simple_repeat Simple_repeat 1 28 0 480 273 8 23 chr1 54329821 54329953 -188334400 - L2 LINE L2 -1 3312 3183 780 178 124 24 chr1 54329958 54330127 -188334226 - MSTA LTR MaLR 0 428 243 330 265 147 0 chr1 54330760 54330862 -188333491 - L2 LINE L2 -2 3270 3154 186 397 44 44 chr1 54331581 54331876 -188332477 + L2 LINE L2 2839 3133 -139 2379 88 3 0 chr1 54331971 54332279 -188332074 + AluY SINE Alu 1 309 -2 467 306 4 3 chr1 54332534 54332764 -188331589 + MER45C DNA AcHobo 1 302 -651 1746 258 58 16 chr1 54332859 54333305 -188331048 + MER45C DNA AcHobo 489 953 0 1536 212 50 0 chr1 54333407 54333728 -188330625 - MER58B DNA MER1_type -4 337 1 243 146 0 0 chr1 54333886 54333927 -188330426 + (TC)n Simple_repeat Simple_repeat 1 41 0 339 283 52 35 chr1 54384315 54384488 -188279865 + MIR SINE MIR 73 248 -14 392 262 64 21 chr1 54384703 54384857 -188279496 + MIR SINE MIR 14 172 -62 4059 159 20 32 chr1 54385371 54386178 -188278175 + L1MB7 LINE L1 5372 6168 -16 342 291 55 11 chr1 54386840 54387022 -188277331 - MIR3 SINE MIR -5 203 14 432 82 0 0 chr1 54387415 54387476 -188276877 + (TG)n Simple_repeat Simple_repeat 2 62 0 218 287 35 11 chr1 54387735 54387822 -188276531 + MIR SINE MIR 162 250 -12 288 0 0 0 chr1 54387901 54387933 -188276420 + (CAA)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr1 54388271 54388295 -188276058 + (TG)n Simple_repeat Simple_repeat 1 24 0 340 309 74 43 chr1 54388812 54389042 -188275311 - MIR SINE MIR -12 250 14 500 307 101 14 chr1 54389808 54390047 -188274306 + MIR SINE MIR 2 260 -2 328 115 0 0 chr1 54390588 54390640 -188273713 - L2 LINE L2 0 3313 3262 255 294 106 0 chr1 54390687 54390772 -188273581 - MIR SINE MIR -70 138 45 183 309 62 0 chr1 54391815 54391912 -188272441 + MIR3 SINE MIR 78 180 -28 405 0 0 0 chr1 54392223 54392268 -188272085 + (CA)n Simple_repeat Simple_repeat 2 46 0 493 291 146 5 chr1 54392401 54392614 -188271739 - MIR SINE MIR 0 262 20 422 234 213 29 chr1 54392636 54392875 -188271478 - L3 LINE CR1 -17 1560 1278 242 302 94 0 chr1 54393944 54394050 -188270303 - L2 LINE L2 -18 3254 3139 205 167 0 0 chr1 54394160 54394196 -188270157 + (GTTTG)n Simple_repeat Simple_repeat 2 37 0 399 304 82 32 chr1 54394488 54394646 -188269707 + MIR3 SINE MIR 32 197 -11 386 225 0 134 chr1 54395074 54395216 -188269137 + MIR3 SINE MIR 85 207 -1 307 306 110 65 chr1 54396018 54396400 -188267953 + L2 LINE L2 2004 2402 -912 189 281 56 34 chr1 54397750 54397839 -188266514 - L2 LINE L2 -43 3229 3139 255 324 86 55 chr1 54398185 54398475 -188265878 - L2 LINE L2 -456 2858 2560 471 264 75 38 chr1 54399369 54399528 -188264825 + MIR SINE MIR 33 197 -65 187 200 29 129 chr1 54401410 54401480 -188262873 + MIR3 SINE MIR 114 176 -32 206 386 0 20 chr1 54401864 54402017 -188262336 + GA-rich Low_complexity Low_complexity 1 150 0 25 65 0 0 chr1 54402188 54402234 -188262119 + GC_rich Low_complexity Low_complexity 1 46 0 977 264 85 38 chr1 54402461 54403542 -188260811 - L1ME3A LINE L1 -282 5871 4740 324 304 50 41 chr1 54403638 54403858 -188260495 - L1ME3A LINE L1 -3937 2192 1971 312 331 119 0 chr1 54404148 54404308 -188260045 - HAL1 LINE L1 -797 1710 1532 2567 188 115 20 chr1 54404412 54404500 -188259853 - LTR36 LTR ERV1 0 611 533 1999 100 50 0 chr1 54404500 54404781 -188259572 + AluY SINE Alu 3 297 -14 2567 188 115 20 chr1 54404781 54405250 -188259103 - LTR36 LTR ERV1 -78 533 1 283 282 76 52 chr1 54405531 54406036 -188258317 - L1MEd LINE L1 -4705 1424 907 337 297 77 26 chr1 54406089 54406284 -188258069 - L1MEd LINE L1 -5236 883 679 484 231 14 41 chr1 54407198 54407345 -188257008 - L1ME LINE L1 -357 5764 5622 235 319 76 38 chr1 54407376 54407533 -188256820 - MLT1I LTR MaLR -28 381 219 998 258 36 4 chr1 54407534 54407902 -188256451 - LTR16C LTR ERVL 0 491 72 253 263 82 105 chr1 54407971 54408142 -188256211 - MLT1I LTR MaLR -185 224 58 4328 173 24 30 chr1 54408256 54409384 -188254969 - L1MB7 LINE L1 0 6184 5059 2242 102 3 0 chr1 54409384 54409678 -188254675 - AluY SINE Alu -16 295 1 4328 173 24 30 chr1 54409678 54409879 -188254474 - L1MB7 LINE L1 -1125 5059 4858 353 396 57 13 chr1 54409915 54410145 -188254208 - MIR SINE MIR -10 252 13 350 291 162 29 chr1 54410687 54410897 -188253456 - L1ME4a LINE L1 -69 6052 5815 441 227 142 8 chr1 54410907 54411154 -188253199 - L1ME4a LINE L1 -3 6118 5839 559 252 27 27 chr1 54411370 54411592 -188252761 - L1ME4a LINE L1 -363 5758 5537 586 296 77 37 chr1 54412079 54412481 -188251872 - MLT1K LTR MaLR -40 548 131 494 285 50 28 chr1 54412895 54413074 -188251279 + MIR SINE MIR 35 217 -45 405 263 88 58 chr1 54413465 54413670 -188250683 + MIR SINE MIR 52 262 0 2493 226 11 11 chr1 54413678 54414199 -188250154 - MLT1F LTR MaLR -14 528 8 495 333 24 12 chr1 54414902 54415067 -188249286 + MIR SINE MIR 30 196 -66 216 0 0 0 chr1 54415079 54415103 -188249250 + (A)n Simple_repeat Simple_repeat 1 24 0 358 327 74 14 chr1 54416103 54416283 -188248070 - MIR SINE MIR -75 187 2 1581 171 30 0 chr1 54416341 54416604 -188247749 + AluJb SINE Alu 40 310 -2 2166 109 0 0 chr1 54417110 54417428 -188246925 - AluSx SINE Alu 0 318 1 591 168 97 0 chr1 54417579 54417692 -188246661 + MER5C DNA MER1_type 1 124 -200 231 200 22 0 chr1 54417864 54417909 -188246444 + L2 LINE L2 3208 3253 -19 226 238 16 48 chr1 54419250 54419313 -188245040 - L2 LINE L2 -8 3264 3204 196 362 58 0 chr1 54419384 54419453 -188244900 - L2 LINE L2 -50 3222 3150 209 323 69 0 chr1 54419581 54419652 -188244701 - MIR SINE MIR -51 157 79 2343 87 3 0 chr1 54419803 54420101 -188244252 - AluSp SINE Alu -14 299 1 243 0 0 0 chr1 54420110 54420137 -188244216 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 358 280 119 12 chr1 54420296 54420464 -188243889 - MER117 DNA MER1_type -10 187 2 203 307 27 0 chr1 54420477 54420552 -188243801 - MIR SINE MIR -64 144 68 636 33 33 0 chr1 54420695 54420786 -188243567 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 315 49 0 0 chr1 54420785 54420826 -188243527 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 * 1069 234 52 4 chr1 54421164 54421412 -188242941 - MIR SINE MIR -1 261 2 206 351 58 26 chr1 54422381 54422535 -188241818 - L2 LINE L2 -181 3091 2933 493 290 51 7 chr1 54423293 54423431 -188240922 + MIR3 SINE MIR 58 201 -7 670 184 52 17 chr1 54423493 54423667 -188240686 - MER58 DNA MER1_type -134 207 28 2848 163 12 20 chr1 54423953 54424513 -188239840 - L1MB2 LINE L1 -36 6135 5580 23 33 0 0 chr1 54425285 54425315 -188239038 + AT_rich Low_complexity Low_complexity 1 30 0 2810 191 57 43 chr1 54425850 54426610 -188237743 - L1ME1 LINE L1 -19 6147 5378 359 209 77 35 chr1 54426642 54426763 -188237590 - MIR SINE MIR -36 172 97 207 343 0 0 chr1 54426769 54426836 -188237517 - L2 LINE L2 -10 3262 3196 3984 115 23 61 chr1 54427526 54428377 -188235976 - L1MA4 LINE L1 -291 6009 5195 1357 94 108 0 chr1 54428481 54428693 -188235660 - MLT2A2 LTR ERVL -218 235 1 298 317 89 18 chr1 54428693 54428890 -188235463 + L2 LINE L2 2864 3135 -178 239 147 26 35 chr1 54428945 54429061 -188235292 + (TTATA)n Simple_repeat Simple_repeat 2 116 0 251 330 150 0 chr1 54429065 54429165 -188235188 + L2 LINE L2 3158 3272 0 248 179 36 36 chr1 54429602 54429658 -188234695 - MIR3 SINE MIR -1 207 152 189 0 0 0 chr1 54429678 54429699 -188234654 + (T)n Simple_repeat Simple_repeat 1 21 0 260 320 97 10 chr1 54429733 54429836 -188234517 - MIR SINE MIR -79 129 18 * 474 254 43 14 chr1 54429828 54429966 -188234387 + L2 LINE L2 2511 2652 -662 189 265 0 20 chr1 54430009 54430058 -188234295 + L2 LINE L2 2725 2772 -542 594 295 82 43 chr1 54430421 54430726 -188233627 + L2 LINE L2 2997 3313 0 1688 179 57 26 chr1 54431243 54431594 -188232759 - MLT1A2 LTR MaLR -7 367 6 2072 200 13 22 chr1 54431599 54432060 -188232293 - MLT1A2-int LTR MaLR 0 1735 1279 362 258 0 0 chr1 54432082 54432171 -188232182 - MLT1A2-int LTR MaLR -968 767 679 2172 203 28 32 chr1 54432291 54432885 -188231468 - MLT1A2-int LTR MaLR -634 737 5 2274 211 43 37 chr1 54432887 54433404 -188230949 - MLT2B1 LTR ERVL 0 520 1 419 207 89 47 chr1 54433837 54434006 -188230347 + MIR SINE MIR 22 197 -65 281 369 110 24 chr1 54434317 54434572 -188229781 - L2 LINE L2 -1 3271 2995 252 98 0 0 chr1 54434741 54434782 -188229571 - MIR SINE MIR -86 122 82 911 286 83 18 chr1 54434803 54435142 -188229211 + L2 LINE L2 2952 3312 -1 276 252 10 39 chr1 54435163 54435266 -188229087 - L1ME LINE L1 -406 5715 5616 190 375 0 0 chr1 54435278 54435334 -188229019 + L2 LINE L2 3216 3271 -1 225 278 56 0 chr1 54435485 54435539 -188228814 - L2 LINE L2 -95 3177 3121 597 294 50 30 chr1 54435580 54435781 -188228572 + MIR SINE MIR 58 262 0 320 300 123 15 chr1 54435789 54435919 -188228434 - MIR3 SINE MIR -62 146 3 564 255 126 39 chr1 54436639 54436870 -188227483 + MIR SINE MIR 2 252 -10 180 111 0 0 chr1 54437054 54437081 -188227272 + (CA)n Simple_repeat Simple_repeat 2 28 0 776 265 121 18 chr1 54437399 54437739 -188226614 - LTR33A LTR ERVL 0 523 149 1134 126 58 0 chr1 54437784 54437958 -188226395 - AluSg/x SINE Alu -2 310 127 182 367 166 22 chr1 54438260 54438399 -188225954 + L2 LINE L2 3094 3252 -20 228 273 0 0 chr1 54438403 54438447 -188225906 + polypurine Low_complexity Low_complexity 3 46 0 183 80 0 0 chr1 54438529 54438554 -188225799 + (CA)n Simple_repeat Simple_repeat 1 25 0 233 291 114 13 chr1 54438577 54438656 -188225697 - MIR SINE MIR -70 192 106 243 335 130 60 chr1 54438722 54439023 -188225330 - L2 LINE L2 0 3272 2951 298 287 10 20 chr1 54439575 54439676 -188224677 + L3 LINE CR1 927 1026 -551 621 224 95 0 chr1 54439683 54439830 -188224523 - MLT2B1 LTR ERVL -2 518 358 965 209 33 0 chr1 54439850 54440065 -188224288 + L1M4 LINE L1 4709 4930 -1216 * 2207 215 78 7 chr1 54440062 54440762 -188223591 - L1ME2 LINE L1 -231 5933 5184 5419 125 19 8 chr1 54440782 54441770 -188222583 - L1PB4 LINE L1 -14 6142 5141 847 201 27 116 chr1 54441774 54442203 -188222150 - MLT2D LTR ERVL -135 385 1 299 328 35 17 chr1 54442409 54442525 -188221828 + MIR SINE MIR 105 222 -40 * 363 335 80 9 chr1 54442522 54442734 -188221619 + L3 LINE CR1 1276 1502 -75 254 314 20 10 chr1 54442805 54442907 -188221446 + MIR3 SINE MIR 98 200 -8 * 414 306 60 118 chr1 54442898 54443415 -188220938 + L2 LINE L2 2578 3072 -200 243 209 22 11 chr1 54443805 54443896 -188220457 - L1ME LINE L1 -236 5885 5794 330 244 42 76 chr1 54445058 54445177 -188219176 - MIR SINE MIR -118 144 30 385 367 118 42 chr1 54445408 54445814 -188218539 + L2 LINE L2 2836 3272 0 205 102 34 34 chr1 54446371 54446430 -188217923 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 423 0 0 0 chr1 54446432 54446479 -188217874 + (CA)n Simple_repeat Simple_repeat 2 48 0 289 295 157 24 chr1 54446926 54447092 -188217261 - MIR SINE MIR -74 188 1 5366 107 77 0 chr1 54447292 54448199 -188216154 + L1MA5A LINE L1 5317 6293 -4 476 276 81 68 chr1 54449311 54449401 -188214952 + L2 LINE L2 3049 3136 -136 4580 19 0 0 chr1 54449401 54449927 -188214426 - L1PA4 LINE L1 0 6155 5630 476 276 81 68 chr1 54449927 54450057 -188214296 + L2 LINE L2 3136 3272 0 269 339 91 18 chr1 54451113 54451278 -188213075 + MIR3 SINE MIR 21 197 -11 290 206 22 65 chr1 54451753 54451845 -188212508 - MLT1I LTR MaLR 0 409 322 471 273 55 43 chr1 54451884 54452097 -188212256 - MIR3 SINE MIR 0 262 3 211 189 0 0 chr1 54452393 54452430 -188211923 + (TGAG)n Simple_repeat Simple_repeat 1 37 0 229 306 61 31 chr1 54453606 54453704 -188210649 - MIR SINE MIR -12 250 150 379 333 37 0 chr1 54454096 54454258 -188210095 + MIR SINE MIR 81 248 -14 303 301 19 0 chr1 54454311 54454414 -188209939 - MIR SINE MIR -105 157 53 246 156 0 0 chr1 54455223 54455268 -188209085 + (CA)n Simple_repeat Simple_repeat 1 45 0 294 346 31 0 chr1 54455677 54455807 -188208546 + L3 LINE CR1 1315 1448 -129 183 168 28 206 chr1 54456285 54456392 -188207961 - MIR3 SINE MIR -12 196 109 257 333 0 0 chr1 54456454 54456547 -188207806 - MIR SINE MIR -108 154 62 190 358 0 21 chr1 54457650 54457745 -188206608 + MIR3 SINE MIR 3 95 -113 440 303 105 29 chr1 54458077 54458315 -188206038 - MIR SINE MIR 0 262 7 192 271 17 0 chr1 54458427 54458486 -188205867 - MIR SINE MIR -155 107 48 196 286 155 0 chr1 54458878 54458962 -188205391 - L2 LINE L2 -40 3232 3136 202 226 177 16 chr1 54459061 54459123 -188205230 + MIR SINE MIR 79 150 -112 212 333 0 21 chr1 54459532 54459625 -188204728 + MIR SINE MIR 168 258 -4 315 329 88 66 chr1 54459651 54460188 -188204165 - L2 LINE L2 -20 3252 2680 6731 148 21 17 chr1 54460298 54461419 -188202934 + L1PB1 LINE L1 4 1129 -5734 11043 180 15 17 chr1 54461430 54464333 -188200020 + L1PB1 LINE L1 3606 6502 -365 721 110 0 2 chr1 54464334 54464572 -188199781 + AluSx SINE Alu 1 287 -23 2780 86 5 5 chr1 54464572 54464955 -188199398 + L1PB1 LINE L1 6485 6867 0 402 374 62 38 chr1 54466016 54466356 -188197997 - L2 LINE L2 -44 3228 2881 1423 156 48 54 chr1 54466358 54466439 -188197914 + L1MD2 LINE L1 6047 6127 -232 2207 117 0 3 chr1 54466439 54466730 -188197623 + AluSx SINE Alu 1 290 -22 1423 156 48 54 chr1 54466730 54466963 -188197390 + L1MD2 LINE L1 6127 6359 0 543 333 186 32 chr1 54467013 54468160 -188196193 - L2 LINE L2 -410 2904 1582 188 254 294 8 chr1 54468698 54468824 -188195529 + MIR SINE MIR 88 249 -13 238 353 29 48 chr1 54469570 54469777 -188194576 + L2 LINE L2 2864 3066 -206 1531 196 88 40 chr1 54469981 54470425 -188193928 - MLT1C LTR MaLR -2 465 1 274 271 73 10 chr1 54470447 54470543 -188193810 + L2 LINE L2 3169 3270 -2 314 313 149 28 chr1 54470595 54470809 -188193544 - MIR SINE MIR -21 241 2 2244 173 28 8 chr1 54471267 54471462 -188192891 - MSTD LTR MaLR 0 396 207 708 160 56 0 chr1 54471462 54471587 -188192766 - FLAM_A SINE Alu -1 132 1 2244 173 28 8 chr1 54471587 54471779 -188192574 - MSTD LTR MaLR -189 207 1 317 250 48 19 chr1 54471779 54471883 -188192470 + MIR3 SINE MIR 70 176 -32 2364 67 0 3 chr1 54472815 54473098 -188191255 + AluY SINE Alu 12 293 -18 303 308 122 6 chr1 54473270 54473426 -188190927 + MIR SINE MIR 82 255 -7 306 253 0 42 chr1 54473531 54473626 -188190727 + L2 LINE L2 3182 3272 0 311 287 144 26 chr1 54474168 54474363 -188189990 - MIR SINE MIR -25 237 20 791 232 82 14 chr1 54475233 54475453 -188188900 + MIR SINE MIR 28 262 0 484 282 41 6 chr1 54476026 54476196 -188188157 + MIR SINE MIR 81 256 -6 499 245 100 65 chr1 54477037 54477327 -188187026 - L2 LINE L2 0 3313 3014 23 33 0 0 chr1 54478111 54478141 -188186212 + AT_rich Low_complexity Low_complexity 1 30 0 590 226 70 50 chr1 54478157 54478356 -188185997 - MIR SINE MIR -12 250 48 282 268 0 0 chr1 54478398 54478469 -188185884 - MIR SINE MIR -64 144 74 528 251 38 66 chr1 54478561 54478744 -188185609 + MER5B DNA MER1_type 1 178 0 321 336 45 8 chr1 54478763 54478897 -188185456 - MIR3 SINE MIR -68 140 2 3023 138 28 10 chr1 54479284 54479792 -188184561 + L1MC1 LINE L1 5817 6333 0 394 269 185 37 chr1 54480502 54480800 -188183553 + L3 LINE CR1 1164 1505 -72 5066 93 1 0 chr1 54481553 54482248 -188182105 - L1P LINE L1 -973 5173 4478 1688 77 0 34 chr1 54482248 54482499 -188181854 + L1PA7 LINE L1 5912 6167 0 2509 81 0 0 chr1 54482500 54482809 -188181544 + AluSq SINE Alu 1 309 -4 256 348 190 11 chr1 54482880 54483254 -188181099 - L2 LINE L2 0 3272 2832 256 205 70 77 chr1 54483796 54483952 -188180401 - L1ME4a LINE L1 -4 6117 5963 266 315 27 36 chr1 54484193 54484304 -188180049 + L2 LINE L2 3162 3271 -1 522 70 0 0 chr1 54484307 54484378 -188179975 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 207 0 0 0 chr1 54484992 54485015 -188179338 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 25 75 0 0 chr1 54485626 54485679 -188178674 + GC_rich Low_complexity Low_complexity 1 53 0 182 390 10 0 chr1 54487046 54487146 -188177207 - MIR3 SINE MIR -106 102 2 211 302 0 0 chr1 54487985 54488038 -188176315 + MIR SINE MIR 43 95 -167 183 80 0 0 chr1 54488047 54488072 -188176281 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 446 312 8 110 chr1 54488086 54488451 -188175902 - L2 LINE L2 -5 3267 2940 259 163 0 0 chr1 54488450 54488499 -188175854 + MIR SINE MIR 110 158 -104 * 289 231 51 13 chr1 54488627 54488705 -188175648 + MIR SINE MIR 69 149 -113 330 247 11 11 chr1 54490153 54490242 -188174111 - L2 LINE L2 0 3272 3184 221 274 21 53 chr1 54491251 54491346 -188173007 + MIR SINE MIR 43 134 -128 603 250 27 81 chr1 54491384 54491571 -188172782 + MIR SINE MIR 8 179 -83 2452 56 3 0 chr1 54491571 54491859 -188172494 + AluSc SINE Alu 1 289 -20 603 250 27 81 chr1 54491859 54491931 -188172422 + MIR SINE MIR 179 253 -9 366 306 32 19 chr1 54492035 54492192 -188172161 - L3 LINE CR1 -1216 361 203 310 238 24 12 chr1 54493095 54493179 -188171174 - MIR SINE MIR -132 130 46 272 241 12 60 chr1 54493465 54493548 -188170805 - MIR3 SINE MIR -37 171 93 539 332 5 19 chr1 54493729 54493934 -188170419 - L3 LINE CR1 -2 1575 1374 207 333 35 21 chr1 54494190 54494331 -188170022 - L2 LINE L2 -312 2960 2818 242 260 150 10 chr1 54495069 54495169 -188169184 + MIR SINE MIR 7 120 -142 317 282 207 11 chr1 54495217 54495391 -188168962 - L2 LINE L2 -1 3312 3105 203 288 17 0 chr1 54496214 54496273 -188168080 + L2 LINE L2 3212 3271 -1 287 237 183 32 chr1 54497854 54497947 -188166406 - MIR SINE MIR -62 146 40 244 323 94 0 chr1 54498222 54498318 -188166035 - L2 LINE L2 -27 3286 3182 184 289 113 10 chr1 54498441 54498538 -188165815 - MIR SINE MIR -58 204 98 274 344 25 37 chr1 54498910 54499151 -188165202 - L2 LINE L2 -212 3060 2823 250 339 98 9 chr1 54499457 54499569 -188164784 - L2 LINE L2 -19 3253 3132 248 258 135 22 chr1 54500341 54500430 -188163923 - L2 LINE L2 -1 3271 3173 214 93 23 23 chr1 54502171 54502214 -188162139 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 250 271 106 0 chr1 54502408 54502493 -188161860 - L2 LINE L2 -5 3267 3174 441 279 27 7 chr1 54503205 54503352 -188161001 + MIR3 SINE MIR 35 184 -24 243 220 77 66 chr1 54503747 54503838 -188160515 + GSAT Satellite centromeric 77 168 -49 422 344 41 31 chr1 54504145 54504340 -188160013 - MIR3 SINE MIR -3 205 9 573 304 45 18 chr1 54504875 54505099 -188159254 - MIR SINE MIR -31 231 2 494 280 74 44 chr1 54505575 54505820 -188158533 + MIR SINE MIR 2 255 -7 322 276 57 9 chr1 54507051 54507156 -188157197 - MIR3 SINE MIR -6 202 93 182 317 0 0 chr1 54507202 54507243 -188157110 - MER5B DNA MER1_type 0 178 138 * 532 167 8 129 chr1 54507235 54507304 -188157049 + MER5B DNA MER1_type 61 108 -70 2219 99 0 10 chr1 54507304 54507616 -188156737 - AluSc SINE Alu 0 309 1 532 167 8 129 chr1 54507616 54507678 -188156675 + MER5B DNA MER1_type 108 176 -2 564 291 50 20 chr1 54507823 54508022 -188156331 + MIR SINE MIR 56 260 -2 276 305 71 57 chr1 54508565 54508775 -188155578 - L2 LINE L2 -189 3083 2871 540 192 42 0 chr1 54508967 54509134 -188155219 + CT-rich Low_complexity Low_complexity 4 177 0 239 402 60 0 chr1 54509155 54509272 -188155081 - L2 LINE L2 -29 3284 3161 950 200 36 10 chr1 54509412 54509607 -188154746 - MIR SINE MIR -50 212 13 343 328 154 3 chr1 54509757 54510213 -188154140 - L2 LINE L2 -222 3091 2511 199 267 33 0 chr1 54510216 54510276 -188154077 - MIR SINE MIR -152 110 49 415 256 34 34 chr1 54510607 54510724 -188153629 + L2 LINE L2 3155 3271 -1 216 319 121 14 chr1 54510709 54510850 -188153503 + MIR SINE MIR 11 175 -63 * 475 334 186 28 chr1 54510866 54511735 -188152618 + L2 LINE L2 1155 2161 -1153 341 216 417 19 chr1 54511809 54512171 -188152182 + L2 LINE L2 2808 3313 0 291 355 62 72 chr1 54512170 54513106 -188151247 + L2 LINE L2 2225 3152 -120 * 219 246 16 49 chr1 54513134 54513195 -188151158 - MIR SINE MIR -94 114 56 237 319 86 17 chr1 54514070 54514186 -188150167 - MIR3 SINE MIR -4 204 81 226 356 22 11 chr1 54514912 54515002 -188149351 + MIR3 SINE MIR 103 193 -15 230 307 73 66 chr1 54515021 54515158 -188149195 - MIR SINE MIR -43 219 82 321 250 12 36 chr1 54515244 54515328 -188149025 - L2 LINE L2 0 3272 3191 982 273 93 44 chr1 54515624 54516217 -188148136 + L1ME3A LINE L1 5432 5956 -214 340 300 108 0 chr1 54517103 54517233 -188147120 + L3 LINE CR1 1188 1331 -246 363 295 126 33 chr1 54517543 54517726 -188146627 + MIR SINE MIR 4 203 -59 197 242 105 42 chr1 54517901 54517996 -188146357 + MIR SINE MIR 98 198 -64 214 132 19 57 chr1 54518007 54518060 -188146293 - MIR SINE MIR -26 236 186 324 251 215 10 chr1 54518404 54518565 -188145788 + MIR SINE MIR 21 206 -56 305 230 48 79 chr1 54518763 54518889 -188145464 - MIR SINE MIR -94 168 47 324 291 71 31 chr1 54519139 54519266 -188145087 - MER5A DNA MER1_type -1 188 57 425 276 76 27 chr1 54520157 54520342 -188144011 + MIR SINE MIR 10 203 -59 677 259 179 14 chr1 54521081 54521378 -188142975 - L3 LINE CR1 -1 1576 1231 680 270 49 11 chr1 54521441 54521626 -188142727 + MIR SINE MIR 20 211 -51 182 319 213 0 chr1 54521659 54521753 -188142600 - L3 LINE CR1 -415 1162 1049 236 315 12 85 chr1 54521932 54522097 -188142256 + MIR SINE MIR 11 163 -99 319 267 53 73 chr1 54522178 54522328 -188142025 - L3 LINE CR1 -670 907 761 489 223 38 64 chr1 54522642 54522799 -188141554 - L3 LINE CR1 -671 906 754 373 182 156 0 chr1 54523047 54523124 -188141229 + L2 LINE L2 3225 3313 0 190 250 25 0 chr1 54524051 54524091 -188140262 + L2 LINE L2 3006 3046 -226 210 214 171 57 chr1 54524265 54524335 -188140018 - L2 LINE L2 -1 3271 3194 839 229 119 13 chr1 54524346 54524573 -188139780 - MIR SINE MIR -5 257 7 186 301 136 54 chr1 54524588 54524867 -188139486 + L2 LINE L2 2926 3227 -45 671 304 92 0 chr1 54525087 54525314 -188139039 + MIR SINE MIR 15 262 0 248 268 227 32 chr1 54525384 54525604 -188138749 - L2 LINE L2 -462 2852 2590 447 305 23 17 chr1 54527056 54527233 -188137120 - MIR SINE MIR -65 197 20 214 200 0 0 chr1 54527259 54527304 -188137049 - L2 LINE L2 -12 3260 3216 183 156 0 0 chr1 54527452 54527484 -188136869 + (CACG)n Simple_repeat Simple_repeat 4 35 0 359 342 25 6 chr1 54527496 54527654 -188136699 + L1ME1 LINE L1 5785 5945 -221 191 268 73 24 chr1 54528101 54528183 -188136170 + L2 LINE L2 3138 3223 -49 271 265 274 17 chr1 54528590 54528707 -188135646 - MIR SINE MIR -91 171 25 244 261 65 87 chr1 54529411 54529549 -188134804 - L2 LINE L2 -1 3271 3137 243 296 14 0 chr1 54529549 54529620 -188134733 + L2 LINE L2 3201 3272 0 224 352 89 21 chr1 54529835 54530071 -188134282 + L2 LINE L2 2967 3218 -95 680 295 48 53 chr1 54530350 54530764 -188133589 - L2 LINE L2 -510 2804 2393 315 330 0 10 chr1 54531115 54531212 -188133141 + MIR SINE MIR 89 184 -78 191 350 80 0 chr1 54531659 54531759 -188132594 + L2 LINE L2 285 392 -2922 392 286 104 41 chr1 54531764 54532033 -188132320 + L2 LINE L2 2964 3249 -23 189 273 0 0 chr1 54532111 54532155 -188132198 - MER5C DNA MER1_type -267 57 14 214 324 29 0 chr1 54532508 54532576 -188131777 + MIR SINE MIR 176 245 -17 201 74 0 0 chr1 54532577 54532604 -188131749 + (TTA)n Simple_repeat Simple_repeat 1 27 0 295 244 46 3 chr1 54532606 54532700 -188131653 - MIR SINE MIR -62 146 83 198 300 17 0 chr1 54532819 54532879 -188131474 + L2 LINE L2 3211 3271 -1 294 311 181 32 chr1 54533027 54533304 -188131049 - L2 LINE L2 -409 2905 2588 258 267 105 68 chr1 54534005 54534196 -188130157 - L2 LINE L2 -120 3152 2955 181 320 52 66 chr1 54534446 54534718 -188129635 + L2 LINE L2 2710 2977 -337 812 241 8 84 chr1 54534938 54535158 -188129195 + MIR SINE MIR 19 219 -43 2176 84 0 3 chr1 54535158 54535490 -188128863 + AluY SINE Alu 1 331 0 812 241 8 84 chr1 54535490 54535529 -188128824 + MIR SINE MIR 219 259 -3 191 308 115 13 chr1 54535797 54535875 -188128478 + L2 LINE L2 3182 3267 -5 253 271 148 13 chr1 54535953 54536108 -188128245 - MIR3 SINE MIR -28 180 5 241 200 36 0 chr1 54536595 54536650 -188127703 + L2 LINE L2 2924 2980 -292 409 250 129 16 chr1 54536976 54537100 -188127253 + MIR SINE MIR 81 218 -44 1831 155 0 0 chr1 54537739 54538063 -188126290 - AluJb SINE Alu 0 312 1 227 196 20 0 chr1 54538296 54538347 -188126006 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 405 307 85 48 chr1 54538354 54538740 -188125613 - L1M4 LINE L1 -2933 3213 2737 300 341 74 22 chr1 54539090 54539360 -188124993 - L1M4 LINE L1 -3573 2573 2290 774 324 29 0 chr1 54539414 54539658 -188124695 + MIR SINE MIR 12 262 0 28 48 0 0 chr1 54539837 54539879 -188124474 + AT_rich Low_complexity Low_complexity 1 42 0 6763 132 39 44 chr1 54539947 54541179 -188123174 + Tigger3b DNA MER2_type 2 1227 -4 397 301 143 51 chr1 54541306 54541995 -188122358 - HAL1b LINE L1 -895 1302 67 1878 130 7 14 chr1 54542479 54542800 -188121553 + AluSx SINE Alu 1 319 0 237 108 0 0 chr1 54543178 54543215 -188121138 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 265 352 96 8 chr1 54543215 54543340 -188121013 + L2 LINE L2 3136 3271 -1 568 204 248 0 chr1 54543474 54543611 -188120742 + FAM SINE Alu 4 174 -1 337 258 60 33 chr1 54543648 54543810 -188120543 - MIR SINE MIR -39 169 3 498 267 109 38 chr1 54544152 54544362 -188119991 + MIR SINE MIR 20 244 -18 774 137 0 48 chr1 54544997 54545121 -188119232 + FLAM_C SINE Alu 3 120 -13 281 118 20 0 chr1 54545121 54545172 -188119181 + (TA)n Simple_repeat Simple_repeat 1 52 0 1457 265 83 26 chr1 54545199 54545659 -188118694 - LTR16C LTR ERVL -5 486 1 506 282 155 24 chr1 54545689 54545902 -188118451 - MIR SINE MIR -1 261 21 617 255 80 40 chr1 54546160 54546360 -188117993 + MIR SINE MIR 32 239 -23 241 289 0 52 chr1 54546402 54546499 -188117854 + MIR SINE MIR 90 181 -81 398 303 109 3 chr1 54547505 54547712 -188116641 + MIR SINE MIR 20 251 -11 198 330 57 0 chr1 54548529 54548617 -188115736 + MIR SINE MIR 24 116 -146 189 315 82 0 chr1 54548592 54548665 -188115688 + MIR3 SINE MIR 112 190 -18 * 206 336 79 61 chr1 54548910 54549139 -188115214 + L3 LINE CR1 1220 1452 -125 287 314 12 0 chr1 54550320 54550406 -188113947 + L2 LINE L2 3186 3272 0 350 273 24 115 chr1 54550531 54550740 -188113613 - MIR SINE MIR -24 238 49 189 0 0 0 chr1 54551006 54551027 -188113326 + (T)n Simple_repeat Simple_repeat 1 21 0 221 331 23 69 chr1 54551617 54551792 -188112561 + MIR3 SINE MIR 1 167 -41 404 299 5 32 chr1 54551999 54552203 -188112150 + MIR SINE MIR 18 262 0 729 141 82 151 chr1 54553673 54553900 -188110453 + MER33 DNA MER1_type 1 203 -2382 2117 93 34 0 chr1 54553900 54554191 -188110162 - AluSx SINE Alu -11 301 1 729 141 82 151 chr1 54554191 54554267 -188110086 + MER33 DNA MER1_type 203 283 -41 344 302 16 0 chr1 54554500 54554626 -188109727 + MIR3 SINE MIR 69 196 -12 1043 161 6 11 chr1 54555154 54555334 -188109019 - AluSg/x SINE Alu -14 298 120 300 246 0 0 chr1 54555434 54555491 -188108862 + LTR16A1 LTR ERVL 29 85 -372 722 161 7 0 chr1 54555546 54555701 -188108652 + GA-rich Low_complexity Low_complexity 3 158 0 1160 104 85 25 chr1 54555843 54556044 -188108309 - AluSg/x SINE Alu 0 312 100 288 200 0 0 chr1 54556904 54556969 -188107384 + CT-rich Low_complexity Low_complexity 2 66 0 644 271 194 18 chr1 54556973 54557309 -188107044 - L2 LINE L2 -5 3308 2914 343 221 67 39 chr1 54557368 54557472 -188106881 - MIR SINE MIR -57 151 45 338 301 7 59 chr1 54558238 54558374 -188105979 - MIR3 SINE MIR -34 174 46 235 267 13 13 chr1 54558453 54558528 -188105825 + CT-rich Low_complexity Low_complexity 4 78 0 268 337 0 23 chr1 54558536 54558622 -188105731 - L2 LINE L2 -1 3271 3188 430 254 98 106 chr1 54558643 54558918 -188105435 - L2 LINE L2 -3 3269 2997 450 211 143 15 chr1 54558918 54559051 -188105302 + MIR SINE MIR 58 207 -55 427 243 63 0 chr1 54559048 54559159 -188105194 + MIR SINE MIR 97 214 -48 * 302 301 127 30 chr1 54559346 54559512 -188104841 - MIR SINE MIR -9 253 72 403 232 39 97 chr1 54559794 54560001 -188104352 + Charlie8 DNA MER1_type 46 240 -2177 183 278 68 90 chr1 54561030 54561163 -188103190 - L3 LINE CR1 -100 1477 1348 320 328 142 0 chr1 54561926 54562060 -188102293 - MIR SINE MIR -107 155 3 1724 138 60 3 chr1 54562384 54562666 -188101687 + AluJo SINE Alu 1 298 -14 232 182 23 0 chr1 54562684 54562728 -188101625 - MIR SINE MIR -100 162 118 2012 136 30 67 chr1 54562802 54563207 -188101146 - MLT1B LTR MaLR 0 390 1 345 296 65 53 chr1 54563757 54563926 -188100427 - MIR SINE MIR -11 251 81 403 330 10 65 chr1 54563967 54564167 -188100186 - MER5A DNA MER1_type 0 189 1 192 250 94 73 chr1 54565016 54565112 -188099241 - L2 LINE L2 -5 3308 3211 485 263 80 7 chr1 54565380 54565517 -188098836 + MIR SINE MIR 45 191 -71 334 198 27 81 chr1 54565698 54565809 -188098544 - MIR SINE MIR -152 110 6 285 300 12 118 chr1 54565918 54566088 -188098265 + L2 LINE L2 3030 3181 -91 214 286 32 0 chr1 54567532 54567595 -188096758 + MIR SINE MIR 180 244 -18 360 265 20 0 chr1 54568017 54568119 -188096234 - MIR3 SINE MIR -21 187 84 336 218 50 106 chr1 54568135 54568314 -188096039 - MER5B DNA MER1_type -6 172 4 714 288 74 4 chr1 54568501 54568730 -188095623 - MIR SINE MIR -10 252 8 27 0 0 0 chr1 54569121 54569148 -188095205 + AT_rich Low_complexity Low_complexity 1 27 0 190 340 0 0 chr1 54569255 54569308 -188095045 + MIR SINE MIR 74 126 -82 183 283 77 120 chr1 54570053 54570286 -188094067 - L2 LINE L2 -55 3217 2995 1034 213 33 0 chr1 54570291 54570502 -188093851 - MIR SINE MIR 0 262 45 252 235 78 113 chr1 54570632 54570747 -188093606 + MIR SINE MIR 20 130 -132 181 322 0 0 chr1 54572029 54572088 -188092265 + MIR SINE MIR 51 109 -153 183 148 0 0 chr1 54572142 54572169 -188092184 + MIR SINE MIR 218 244 -18 303 232 105 48 chr1 54572246 54572394 -188091959 - MLT1G1 LTR MaLR 0 595 419 274 268 155 0 chr1 54573252 54573349 -188091004 - L2 LINE L2 -13 3300 3189 208 296 0 0 chr1 54573348 54573402 -188090951 + MIR3 SINE MIR 117 170 -38 * 530 302 93 19 chr1 54573419 54573634 -188090719 - MIR SINE MIR -18 244 14 200 308 176 0 chr1 54573695 54573786 -188090567 + L2 LINE L2 3158 3264 -8 449 290 196 16 chr1 54573878 54574261 -188090092 + LTR16A1 LTR ERVL 3 454 -3 321 292 23 15 chr1 54574708 54574838 -188089515 + MIR3 SINE MIR 71 201 -7 934 224 5 36 chr1 54575525 54575748 -188088605 + MER20 DNA MER1_type 2 217 -2 468 289 23 8 chr1 54575838 54575966 -188088387 - MIR SINE MIR -92 170 41 441 331 59 19 chr1 54576412 54576822 -188087531 - L2 LINE L2 -229 3043 2614 297 0 0 0 chr1 54577040 54577073 -188087280 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2399 202 60 24 chr1 54577442 54577977 -188086376 - MLT1F1 LTR MaLR -8 559 6 851 286 52 20 chr1 54578004 54578252 -188086101 + MIR SINE MIR 2 257 -5 687 231 54 0 chr1 54578294 54578441 -188085912 + MIR SINE MIR 1 155 -107 202 250 0 19 chr1 54578443 54578495 -188085858 + L2 LINE L2 3263 3313 0 519 265 40 7 chr1 54579463 54579614 -188084739 + MIR SINE MIR 43 198 -64 234 357 63 16 chr1 54579659 54579785 -188084568 - L2 LINE L2 0 3313 3182 1380 267 113 39 chr1 54580413 54581129 -188083224 - L1MEc LINE L1 -5553 843 75 415 251 176 37 chr1 54581133 54581320 -188083033 + MIR SINE MIR 38 250 -12 411 294 65 37 chr1 54581365 54581579 -188082774 - MIR SINE MIR -8 254 35 180 111 0 0 chr1 54582129 54582156 -188082197 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 373 288 234 11 chr1 54582687 54582871 -188081482 + MIR SINE MIR 28 252 -10 299 286 85 50 chr1 54582926 54583134 -188081219 - MIR SINE MIR -34 228 18 180 244 49 0 chr1 54583388 54583429 -188080924 - MIR SINE MIR -118 144 102 252 274 68 42 chr1 54583569 54583799 -188080554 + L2 LINE L2 2782 3017 -255 242 242 76 0 chr1 54584005 54584071 -188080282 + MIR SINE MIR 120 190 -72 256 250 43 65 chr1 54584096 54584188 -188080165 - MIR SINE MIR -112 96 7 370 289 88 0 chr1 54584264 54584378 -188079975 - MIR SINE MIR -65 143 20 669 295 21 10 chr1 54585051 54585244 -188079109 + MIR SINE MIR 56 250 -12 395 287 79 30 chr1 54585700 54585902 -188078451 + MIR SINE MIR 29 240 -22 299 313 20 0 chr1 54585988 54586087 -188078266 - MIR SINE MIR -92 116 16 300 53 0 0 chr1 54586204 54586242 -188078111 + (CA)n Simple_repeat Simple_repeat 2 39 0 241 200 133 27 chr1 54586424 54586499 -188077854 + MIR SINE MIR 71 153 -55 248 347 95 0 chr1 54586860 54586989 -188077364 + MIR SINE MIR 20 158 -62 437 365 15 0 chr1 54587038 54587175 -188077178 - L2 LINE L2 0 3272 3134 655 251 96 11 chr1 54587815 54588002 -188076351 - MIR SINE MIR -53 209 7 2153 140 20 3 chr1 54588084 54588441 -188075912 - L1PA16 LINE L1 0 6166 5804 196 310 35 0 chr1 54588731 54588789 -188075564 - L2 LINE L2 -4 3268 3209 340 311 163 0 chr1 54589141 54589276 -188075077 - MIR3 SINE MIR -5 203 47 243 270 174 17 chr1 54589490 54589605 -188074748 - MIR SINE MIR -83 179 47 270 81 0 0 chr1 54589738 54589775 -188074578 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 185 330 199 16 chr1 54590700 54590891 -188073462 - L2 LINE L2 -539 2775 2550 181 344 0 0 chr1 54591110 54591174 -188073179 + MIR SINE MIR 84 147 -115 409 230 68 16 chr1 54591950 54592103 -188072250 + MIR SINE MIR 19 181 -80 266 205 313 24 chr1 54592366 54592449 -188071904 - MIR SINE MIR -84 178 72 401 318 89 100 chr1 54592575 54592860 -188071493 + L2 LINE L2 2826 3106 -166 967 191 0 0 chr1 54592860 54593017 -188071336 - FRAM SINE Alu -5 161 5 401 318 89 100 chr1 54593017 54593181 -188071172 + L2 LINE L2 3106 3270 -2 374 241 138 17 chr1 54593196 54593312 -188071041 - MIR3 SINE MIR -66 142 13 217 263 93 51 chr1 54593698 54593816 -188070537 + MIR3 SINE MIR 86 208 0 184 288 17 0 chr1 54594023 54594082 -188070271 - MIR3 SINE MIR -1 207 148 596 203 29 7 chr1 54594157 54594295 -188070058 + MER103 DNA DNA 11 151 -15 473 135 11 0 chr1 54594543 54594632 -188069721 + GA-rich Low_complexity Low_complexity 1 90 0 635 272 138 5 chr1 54595049 54595273 -188069080 + MIR SINE MIR 3 256 -6 535 271 126 36 chr1 54595739 54596016 -188068337 + L2 LINE L2 2997 3298 -15 234 249 17 0 chr1 54596383 54596451 -188067902 - MIR SINE MIR -65 143 84 1809 166 15 6 chr1 54596696 54597027 -188067326 + L1MB3 LINE L1 5839 6172 -11 273 291 47 0 chr1 54598003 54598089 -188066264 - L2 LINE L2 -12 3260 3171 390 311 8 16 chr1 54598183 54598305 -188066048 - MIR SINE MIR -52 210 90 378 0 0 0 chr1 54598521 54598563 -188065790 + (CA)n Simple_repeat Simple_repeat 1 42 0 677 268 68 61 chr1 54598887 54599283 -188065070 - L3 LINE CR1 -101 1476 1078 625 266 96 11 chr1 54599311 54599499 -188064854 - MIR SINE MIR -1 261 58 185 296 17 61 chr1 54599536 54599651 -188064702 - L3 LINE CR1 -604 973 864 436 255 1 44 chr1 54599658 54599796 -188064557 - MIR SINE MIR -77 131 52 202 320 50 33 chr1 54600232 54600413 -188063940 + L2 LINE L2 2720 2903 -411 466 300 98 65 chr1 54600546 54600853 -188063500 - L2 LINE L2 -10 3262 2946 269 264 14 0 chr1 54600881 54600953 -188063400 - MIR SINE MIR 0 262 190 524 205 49 78 chr1 54601433 54601610 -188062743 - MIR SINE MIR -62 146 16 445 301 58 6 chr1 54601697 54601853 -188062500 + MER91A DNA MER1_type 21 184 -12 642 265 105 9 chr1 54601955 54602174 -188062179 - MIR SINE MIR 0 262 23 405 285 23 2 chr1 54602428 54602561 -188061792 + MIR3 SINE MIR 48 183 -25 241 301 14 14 chr1 54602898 54602971 -188061382 + MER91A DNA MER1_type 1 73 -123 387 265 77 17 chr1 54603254 54603371 -188060982 + MIR SINE MIR 3 126 -136 406 288 27 9 chr1 54603381 54603492 -188060861 - L2 LINE L2 -23 3249 3137 402 277 10 10 chr1 54603494 54603595 -188060758 - MIR SINE MIR -161 101 1 431 258 82 31 chr1 54604413 54604572 -188059781 + MIR SINE MIR 47 213 -49 337 299 51 58 chr1 54604661 54604798 -188059555 - L2 LINE L2 0 3272 3137 293 290 20 30 chr1 54605280 54605380 -188058973 + L2 LINE L2 2919 3017 -255 388 308 77 2 chr1 54605569 54605751 -188058602 - MIR3 SINE MIR -6 202 8 229 399 59 0 chr1 54606040 54606243 -188058110 + MIR SINE MIR 2 216 -46 368 320 37 86 chr1 54606254 54606523 -188057830 - L2 LINE L2 -5 3267 3012 194 293 0 75 chr1 54606662 54606768 -188057585 - MIR SINE MIR -113 149 52 405 324 62 5 chr1 54606813 54607023 -188057330 + L3 LINE CR1 1293 1514 -63 252 344 48 32 chr1 54608002 54608127 -188056226 + L2 LINE L2 3126 3252 -20 249 329 12 12 chr1 54608249 54608331 -188056022 + MIR SINE MIR 20 101 -161 469 278 132 22 chr1 54608515 54608742 -188055611 + MIR SINE MIR 8 259 -3 560 264 32 47 chr1 54608907 54609184 -188055169 + L1ME4a LINE L1 5613 5885 -236 243 301 9 53 chr1 54609425 54609538 -188054815 - MIR SINE MIR -59 149 42 332 317 148 5 chr1 54609934 54610136 -188054217 - L2 LINE L2 -649 2665 2435 558 242 7 26 chr1 54610225 54610378 -188053975 + MIR SINE MIR 101 250 -12 225 273 13 0 chr1 54610841 54610918 -188053435 - MLT1K LTR MaLR -2 586 509 244 281 49 12 chr1 54611443 54611525 -188052828 + L3 LINE CR1 1375 1459 -118 458 209 0 11 chr1 54613266 54613357 -188050996 - MER94 DNA DNA -33 101 12 2122 121 0 10 chr1 54613383 54613673 -188050680 + AluSx SINE Alu 1 287 -25 195 210 81 48 chr1 54614028 54614090 -188050263 - L2 LINE L2 -91 3181 3118 344 284 227 8 chr1 54614139 54614466 -188049887 - L2 LINE L2 -237 3035 2628 202 283 30 30 chr1 54615024 54615123 -188049230 + L2 LINE L2 3173 3271 -1 195 328 67 8 chr1 54616024 54616143 -188048210 - L2 LINE L2 -11 3261 3136 216 305 0 0 chr1 54616755 54616814 -188047539 + L2 LINE L2 2406 2464 -850 212 159 175 16 chr1 54616950 54617013 -188047340 + L2 LINE L2 3241 3313 0 255 256 26 43 chr1 54617034 54617151 -188047202 - L2 LINE L2 -606 2708 2594 21 0 0 0 chr1 54617539 54617560 -188046793 + AT_rich Low_complexity Low_complexity 1 21 0 260 279 27 14 chr1 54617604 54617751 -188046602 + (CA)n Simple_repeat Simple_repeat 2 150 0 191 318 23 47 chr1 54618391 54618520 -188045833 + MIR3 SINE MIR 71 196 -12 257 308 39 0 chr1 54619416 54619494 -188044859 + MIR SINE MIR 109 189 -73 218 231 154 39 chr1 54619598 54619702 -188044651 + L2 LINE L2 3186 3301 -12 762 175 0 0 chr1 54619763 54619889 -188044464 + FLAM_C SINE Alu 18 143 0 189 175 0 0 chr1 54619890 54619930 -188044423 + GA-rich Low_complexity Low_complexity 2 41 0 483 18 0 0 chr1 54619930 54619986 -188044367 + (GGAA)n Simple_repeat Simple_repeat 4 59 0 916 171 25 6 chr1 54619991 54620149 -188044204 + AluJo SINE Alu 120 280 -32 297 0 0 0 chr1 54620154 54620187 -188044166 + (CA)n Simple_repeat Simple_repeat 1 33 0 280 330 89 0 chr1 54620597 54620709 -188043644 + L2 LINE L2 3136 3257 -15 208 289 268 0 chr1 54621874 54621971 -188042382 - L2 LINE L2 0 3272 3150 470 254 189 31 chr1 54622046 54622273 -188042080 + MIR SINE MIR 14 262 0 2451 91 0 0 chr1 54622293 54622601 -188041752 + AluSx SINE Alu 1 308 -4 436 296 53 49 chr1 54622739 54622986 -188041367 - L2 LINE L2 -189 3083 2836 679 244 154 32 chr1 54623172 54623582 -188040771 + L1ME4a LINE L1 5616 6075 -46 235 258 0 15 chr1 54623781 54623847 -188040506 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 370 216 130 142 chr1 54624082 54624336 -188040017 + MIR SINE MIR 11 261 -1 1559 135 67 46 chr1 54624514 54624796 -188039557 + AluJo SINE Alu 1 288 -24 324 241 241 9 chr1 54625568 54625680 -188038673 - MIR SINE MIR -8 254 117 259 375 42 21 chr1 54625751 54625895 -188038458 + L2 LINE L2 3125 3271 -1 193 277 15 15 chr1 54625911 54625976 -188038377 - MIR SINE MIR -114 94 30 293 321 38 31 chr1 54626514 54626673 -188037680 - MIR3 SINE MIR -6 202 43 334 292 102 29 chr1 54626784 54626858 -188037495 - MIR SINE MIR -46 216 149 800 197 0 0 chr1 54626858 54626990 -188037363 - FLAM_C SINE Alu -1 132 1 334 292 102 29 chr1 54626990 54627088 -188037265 - MIR SINE MIR -113 149 37 219 261 0 0 chr1 54627984 54628053 -188036300 + CT-rich Low_complexity Low_complexity 2 70 0 193 329 73 0 chr1 54628069 54628151 -188036202 - L2 LINE L2 -48 3224 3137 288 263 59 17 chr1 54628406 54628524 -188035829 - MIR SINE MIR -49 213 91 232 271 85 42 chr1 54628636 54628754 -188035599 + MIR3 SINE MIR 54 176 -32 486 224 171 26 chr1 54628802 54628942 -188035411 - MER5A DNA MER1_type -7 182 17 1721 161 19 56 chr1 54628942 54629320 -188035033 + MLT1A1 LTR MaLR 1 364 -1 486 224 171 26 chr1 54629320 54629331 -188035022 - MER5A DNA MER1_type -172 17 9 460 263 68 0 chr1 54630664 54630797 -188033556 - MIR3 SINE MIR -1 207 66 566 266 63 66 chr1 54631248 54631556 -188032797 - MLT1I LTR MaLR -40 369 99 193 262 16 16 chr1 54631672 54631733 -188032620 + MIR SINE MIR 85 145 -63 357 229 84 0 chr1 54631783 54631866 -188032487 + MIR SINE MIR 45 134 -128 467 249 134 47 chr1 54631870 54631933 -188032420 + HAL1b LINE L1 901 957 -391 2191 113 0 0 chr1 54631933 54632225 -188032128 - AluSx SINE Alu -20 292 1 467 249 134 47 chr1 54632225 54632526 -188031827 + HAL1b LINE L1 957 1297 -51 389 281 46 115 chr1 54632636 54632896 -188031457 + L2 LINE L2 3031 3272 0 403 290 97 6 chr1 54633291 54633467 -188030886 + MIR SINE MIR 1 192 -70 328 189 126 32 chr1 54633517 54633612 -188030741 - MIR SINE MIR -35 227 124 340 253 147 0 chr1 54634769 54634864 -188029489 - L2 LINE L2 -27 3245 3137 351 308 53 13 chr1 54634963 54635143 -188029210 - MIR SINE MIR -64 144 6 331 317 59 68 chr1 54635210 54635356 -188028997 - L2 LINE L2 -218 3054 2908 1821 164 0 10 chr1 54635356 54635649 -188028704 + AluJo SINE Alu 3 292 -20 331 317 59 68 chr1 54635649 54635894 -188028459 - L2 LINE L2 -364 2908 2658 339 252 41 16 chr1 54636042 54636165 -188028188 + MIR SINE MIR 81 206 -56 549 44 0 0 chr1 54636465 54636533 -188027820 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 460 281 62 6 chr1 54637064 54637224 -188027129 + MIR SINE MIR 57 225 -37 2048 131 0 3 chr1 54637458 54637741 -188026612 - AluSx SINE Alu -30 282 1 567 162 234 18 chr1 54637741 54637908 -188026445 + MER3 DNA MER1_type 7 209 0 364 323 109 14 chr1 54637968 54638184 -188026169 - MIR SINE MIR -15 247 7 254 167 9 176 chr1 54638254 54638362 -188025991 - L2 LINE L2 -618 2696 2607 278 240 16 80 chr1 54638419 54638544 -188025809 - MIR3 SINE MIR -3 205 89 393 348 105 48 chr1 54639353 54639773 -188024580 - L2 LINE L2 0 3272 2829 266 356 48 0 chr1 54639884 54639988 -188024365 + MIR3 SINE MIR 3 111 -97 333 0 0 0 chr1 54640908 54640945 -188023408 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 1813 130 36 4 chr1 54640945 54641097 -188023256 - AluSx SINE Alu -32 280 114 269 26 26 0 chr1 54641097 54641135 -188023218 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1813 130 36 4 chr1 54641135 54641253 -188023100 - AluSx SINE Alu -198 114 1 421 331 51 54 chr1 54641295 54641595 -188022758 + L2 LINE L2 2595 2873 -399 2043 140 0 0 chr1 54641595 54641887 -188022466 - AluSc SINE Alu -17 292 1 421 331 51 54 chr1 54641887 54642069 -188022284 + L2 LINE L2 2873 3054 -218 279 263 34 25 chr1 54642195 54642313 -188022040 + GA-rich Low_complexity Low_complexity 2 120 0 274 320 86 8 chr1 54642715 54642843 -188021510 - MIR3 SINE MIR -15 193 56 193 323 134 8 chr1 54643297 54643424 -188020929 + MIR SINE MIR 49 191 -71 250 336 16 23 chr1 54643804 54643932 -188020421 - MIR SINE MIR -62 146 20 413 207 286 15 chr1 54644543 54644746 -188019607 + MIR SINE MIR 5 262 0 321 356 34 0 chr1 54644854 54644972 -188019381 - L2 LINE L2 0 3272 3151 * 514 286 91 50 chr1 54644970 54645432 -188018921 + L2 LINE L2 1983 2463 -851 4536 131 35 12 chr1 54645529 54646301 -188018052 + Tigger3b DNA MER2_type 2 791 -440 237 118 0 0 chr1 54646301 54646335 -188018018 + Alu SINE Alu 1 34 -268 227 209 0 0 chr1 54646302 54646345 -188018008 + Alu SINE Alu 137 179 -124 * 1516 159 4 0 chr1 54646356 54646582 -188017771 - AluSx SINE Alu -85 227 1 1220 153 0 5 chr1 54646595 54646785 -188017568 + Tigger3b DNA MER2_type 1044 1232 0 298 335 173 4 chr1 54646804 54647076 -188017277 + L2 LINE L2 2630 2947 -367 706 213 0 16 chr1 54647113 54647296 -188017057 + CT-rich Low_complexity Low_complexity 1 180 0 464 115 0 13 chr1 54647331 54647409 -188016944 + (TCCCC)n Simple_repeat Simple_repeat 5 81 0 324 281 0 0 chr1 54647421 54647503 -188016850 - L1M2 LINE L1 -4297 2552 2471 603 277 98 36 chr1 54647528 54647835 -188016518 + L2 LINE L2 2988 3313 0 195 307 60 76 chr1 54647888 54648139 -188016214 - L2 LINE L2 -177 3095 2849 769 171 8 0 chr1 54648333 54648456 -188015897 + FLAM_C SINE Alu 2 125 -18 540 259 14 14 chr1 54648922 54649065 -188015288 + MIR SINE MIR 21 163 -99 368 235 66 44 chr1 54649719 54649855 -188014498 - L2 LINE L2 0 3313 3175 656 271 156 41 chr1 54649974 54650288 -188014065 - MLT1J2 LTR MaLR 0 450 101 812 246 98 99 chr1 54650624 54650714 -188013639 + L1MC4a LINE L1 5285 5374 -782 2122 100 14 7 chr1 54650714 54651033 -188013320 - AluSq SINE Alu 0 321 1 812 246 98 99 chr1 54651033 54651289 -188013064 + L1MC4a LINE L1 5374 5234 -922 2134 103 0 4 chr1 54651289 54651607 -188012746 - AluSg SINE Alu 0 317 1 812 246 98 99 chr1 54651607 54651857 -188012496 + L1MC4a LINE L1 5233 5482 -674 238 133 0 22 chr1 54652146 54652191 -188012162 + L1PB4 LINE L1 6108 6151 -5 29 28 0 0 chr1 54652192 54652228 -188012125 + AT_rich Low_complexity Low_complexity 1 36 0 324 316 120 0 chr1 54652233 54652366 -188011987 + MIR3 SINE MIR 42 190 -18 25 0 0 0 chr1 54653459 54653484 -188010869 + AT_rich Low_complexity Low_complexity 1 25 0 292 281 46 9 chr1 54653519 54653669 -188010684 - MIR SINE MIR -63 145 30 247 129 29 29 chr1 54653962 54654032 -188010321 + (TG)n Simple_repeat Simple_repeat 1 70 0 195 274 85 47 chr1 54654337 54654443 -188009910 - L2 LINE L2 -23 3249 3140 1646 156 19 55 chr1 54654484 54654652 -188009701 - AluJo SINE Alu 0 312 162 2503 66 0 3 chr1 54654652 54654955 -188009398 - AluSp SINE Alu -11 302 1 1646 156 19 55 chr1 54654955 54655112 -188009241 - AluJo SINE Alu -150 162 1 344 296 21 21 chr1 54655750 54655892 -188008461 - MIR3 SINE MIR 0 208 67 744 12 0 0 chr1 54656204 54656289 -188008064 + (TTCTC)n Simple_repeat Simple_repeat 5 89 0 335 187 44 66 chr1 54656292 54656383 -188007970 + MIR3 SINE MIR 119 207 -1 270 0 0 0 chr1 54656403 54656433 -188007920 + (CA)n Simple_repeat Simple_repeat 2 31 0 452 307 29 7 chr1 54656614 54656751 -188007602 - MIR SINE MIR -76 186 47 389 246 43 96 chr1 54656896 54657083 -188007270 + MIR SINE MIR 32 208 -54 212 171 0 0 chr1 54657121 54657162 -188007191 + T-rich Low_complexity Low_complexity 1 41 0 2032 72 4 8 chr1 54657175 54657485 -188006868 + AluY SINE Alu 28 311 0 770 162 0 0 chr1 54657485 54657602 -188006751 - FLAM_A SINE Alu -16 117 1 334 291 77 56 chr1 54657695 54657891 -188006462 - MIR SINE MIR -7 255 56 263 272 12 25 chr1 54658368 54658449 -188005904 + L3 LINE CR1 1425 1504 -73 436 293 8 49 chr1 54658520 54658759 -188005594 + CT-rich Low_complexity Low_complexity 1 229 0 297 384 20 0 chr1 54659969 54660120 -188004233 - L2 LINE L2 -3 3269 3116 342 270 0 22 chr1 54660169 54660258 -188004095 - L2 LINE L2 -5 3308 3222 191 303 33 99 chr1 54660272 54660348 -188004005 - L2 LINE L2 -181 3091 3028 2180 117 0 0 chr1 54660348 54660648 -188003705 - AluSg SINE Alu -10 300 1 191 303 33 99 chr1 54660648 54660723 -188003630 - L2 LINE L2 -244 3028 2950 375 312 8 8 chr1 54660845 54660970 -188003383 - L2 LINE L2 -640 2674 2550 290 276 59 53 chr1 54661370 54661548 -188002805 + MIR SINE MIR 31 207 -55 723 214 11 44 chr1 54661568 54661750 -188002603 + MIR SINE MIR 20 195 -67 570 273 58 12 chr1 54662294 54662466 -188001887 + MIR SINE MIR 73 252 -10 226 190 14 176 chr1 54662598 54662740 -188001613 + MIR3 SINE MIR 90 208 0 572 277 109 14 chr1 54663162 54663382 -188000971 + MIR SINE MIR 14 254 -8 2377 58 6 26 chr1 54665143 54665454 -187998899 - AluY SINE Alu -6 305 1 425 294 44 62 chr1 54665467 54665542 -187998811 - L2 LINE L2 -805 2509 2434 1986 121 0 40 chr1 54665542 54665865 -187998488 + AluSx SINE Alu 1 310 -2 425 294 44 62 chr1 54665865 54666061 -187998292 - L2 LINE L2 -880 2434 2243 285 264 28 94 chr1 54666164 54666270 -187998083 + MIR SINE MIR 19 117 -91 234 0 0 0 chr1 54666307 54666333 -187998020 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 183 184 0 0 chr1 54666771 54666809 -187997544 + (TAA)n Simple_repeat Simple_repeat 1 38 0 303 373 8 0 chr1 54666856 54666974 -187997379 + MIR3 SINE MIR 63 181 -27 445 290 77 19 chr1 54666997 54667152 -187997201 - MIR3 SINE MIR -34 174 11 198 250 0 0 chr1 54667979 54668027 -187996326 + L2 LINE L2 3265 3312 -1 731 283 51 69 chr1 54668259 54668455 -187995898 + L3 LINE CR1 961 1159 -418 512 209 26 35 chr1 54668455 54668570 -187995783 + MER81 DNA DNA 1 114 0 731 283 51 69 chr1 54668570 54668676 -187995677 + L3 LINE CR1 1159 1257 -320 2043 150 15 26 chr1 54668676 54669016 -187995337 - MER1B DNA MER1_type -1 336 1 731 283 51 69 chr1 54669016 54669104 -187995249 + L3 LINE CR1 1257 1345 -232 260 318 119 58 chr1 54669157 54669468 -187994885 - L2 LINE L2 -17 3255 2926 352 255 113 29 chr1 54669896 54670077 -187994276 + MIR3 SINE MIR 34 218 -24 225 94 0 0 chr1 54670533 54670565 -187993788 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 347 253 46 11 chr1 54670672 54670759 -187993594 - MIR SINE MIR -65 197 108 1014 220 43 35 chr1 54671022 54671277 -187993076 + MIR SINE MIR 6 262 0 842 279 10 5 chr1 54672373 54672577 -187991776 + MIR SINE MIR 17 221 -41 317 267 155 35 chr1 54673125 54673241 -187991112 + MIR SINE MIR 106 235 -27 267 288 144 50 chr1 54673700 54673860 -187990493 - MIR SINE MIR -42 220 46 531 255 128 27 chr1 54673922 54674110 -187990243 + MIR SINE MIR 46 252 -10 211 292 46 0 chr1 54674127 54674192 -187990161 + MIR SINE MIR 49 116 -92 189 250 150 67 chr1 54674434 54674554 -187989799 - L2 LINE L2 0 3272 3143 302 294 126 8 chr1 54674773 54674892 -187989461 - MIR3 SINE MIR -33 175 43 394 295 70 124 chr1 54675938 54676382 -187987971 + L2 LINE L2 2841 3260 -12 194 337 12 24 chr1 54676391 54676474 -187987879 - MIR3 SINE MIR -19 189 108 192 346 151 24 chr1 54676734 54676939 -187987414 - L2 LINE L2 -1 3271 3041 274 325 0 0 chr1 54677356 54677433 -187986920 - MIR SINE MIR -118 144 68 207 307 43 79 chr1 54677717 54677857 -187986496 + L2 LINE L2 3123 3257 -56 274 250 91 23 chr1 54677857 54677945 -187986408 - L2 LINE L2 -72 3200 3107 288 0 0 0 chr1 54679214 54679246 -187985107 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 442 379 21 13 chr1 54679582 54679817 -187984536 + L3 LINE CR1 887 1123 -454 369 247 6 23 chr1 54680229 54680403 -187983950 + (CTA)n Simple_repeat Simple_repeat 1 171 0 215 222 19 0 chr1 54680405 54680459 -187983894 + (CTG)n Simple_repeat Simple_repeat 3 57 0 649 286 65 23 chr1 54680463 54680680 -187983673 - MIR SINE MIR -17 245 20 299 217 14 29 chr1 54681201 54681270 -187983083 + MIR SINE MIR 39 106 -102 2216 161 3 0 chr1 54682874 54683221 -187981132 + MER7A DNA MER2_type 1 346 0 221 308 0 66 chr1 54683463 54683554 -187980799 + MIR SINE MIR 99 183 -79 642 328 11 5 chr1 54683718 54683904 -187980449 + MIR3 SINE MIR 19 205 -3 1359 94 0 0 chr1 54684004 54684185 -187980168 - AluSg/x SINE Alu -7 305 125 458 320 52 21 chr1 54685478 54685672 -187978681 - MIR SINE MIR -11 251 52 646 307 44 10 chr1 54686260 54686465 -187977888 + MIR SINE MIR 6 217 -45 278 289 93 21 chr1 54686667 54686764 -187977589 + L2 LINE L2 3210 3313 0 322 301 29 0 chr1 54687158 54687261 -187977092 - MIR SINE MIR -110 152 47 266 373 7 7 chr1 54687445 54687598 -187976755 + L2 LINE L2 2375 2527 -787 313 278 158 23 chr1 54687634 54687767 -187976586 + MIR SINE MIR 29 179 -83 217 170 85 0 chr1 54687813 54687860 -187976493 + L2 LINE L2 2590 2640 -674 462 292 53 109 chr1 54688019 54688358 -187975995 + L2 LINE L2 2953 3272 0 2000 129 10 0 chr1 54688369 54688672 -187975681 + AluSq SINE Alu 5 310 -3 500 204 34 102 chr1 54688674 54688720 -187975633 - MIR SINE MIR 0 262 214 7259 47 13 0 chr1 54688720 54689785 -187974568 - L1PA7 LINE L1 -1 6153 5083 500 204 34 102 chr1 54689785 54689885 -187974468 - MIR SINE MIR -48 214 126 540 45 0 0 chr1 54690257 54690324 -187974029 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 741 249 118 9 chr1 54690645 54690866 -187973487 - MIR SINE MIR -10 252 8 188 304 18 18 chr1 54691249 54691305 -187973048 + MIR SINE MIR 23 78 -184 853 256 155 43 chr1 54691308 54691843 -187972510 + MLT1G1 LTR MaLR 1 595 0 219 286 0 0 chr1 54691843 54691892 -187972461 + MIR SINE MIR 82 130 -78 186 43 0 0 chr1 54691953 54691976 -187972377 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 207 114 0 0 chr1 54692764 54692799 -187971554 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 349 300 28 37 chr1 54693021 54693172 -187971181 - MIR SINE MIR -66 142 39 211 276 206 55 chr1 54693578 54693732 -187970621 - L2 LINE L2 -4 3309 3180 375 41 0 0 chr1 54693732 54693781 -187970572 + (CA)n Simple_repeat Simple_repeat 2 50 0 211 276 206 55 chr1 54693781 54693883 -187970470 - L2 LINE L2 -133 3180 3014 855 288 112 25 chr1 54693911 54694359 -187969994 - L2 LINE L2 -421 2893 2407 258 56 0 0 chr1 54694559 54694595 -187969758 + (CA)n Simple_repeat Simple_repeat 1 36 0 206 367 0 16 chr1 54694619 54694729 -187969624 + CT-rich Low_complexity Low_complexity 1 108 0 228 299 0 47 chr1 54694954 54695061 -187969292 + CT-rich Low_complexity Low_complexity 3 104 0 850 263 26 22 chr1 54695829 54696061 -187968292 + MIR SINE MIR 5 237 -25 501 294 128 38 chr1 54696461 54696672 -187967681 - MIR SINE MIR -13 249 20 316 288 68 90 chr1 54697229 54697451 -187966902 - MIR SINE MIR -44 218 2 242 310 43 26 chr1 54697627 54697743 -187966610 + MIR SINE MIR 33 150 -58 301 345 82 0 chr1 54697754 54697864 -187966489 - L2 LINE L2 -12 3260 3142 463 319 55 59 chr1 54698118 54698391 -187965962 - L2 LINE L2 0 3272 3001 278 266 0 0 chr1 54698485 54698549 -187965804 + MLT1I LTR MaLR 59 122 -287 216 0 0 0 chr1 54698804 54698828 -187965525 + (GA)n Simple_repeat Simple_repeat 1 24 0 361 259 37 0 chr1 54699938 54700046 -187964307 - MIR SINE MIR -82 180 69 1862 199 26 31 chr1 54700046 54700138 -187964215 - MLT2D LTR ERVL 0 414 323 748 178 0 15 chr1 54700138 54700273 -187964080 - FLAM_C SINE Alu 0 133 1 1862 199 26 31 chr1 54700273 54700596 -187963757 - MLT2D LTR ERVL -91 323 1 193 328 35 0 chr1 54700596 54700654 -187963699 - MIR SINE MIR -189 73 14 310 368 42 14 chr1 54700907 54701119 -187963234 - L2 LINE L2 -436 2878 2661 575 273 60 42 chr1 54701284 54701500 -187962853 - MIR SINE MIR -30 232 13 180 0 0 0 chr1 54702340 54702360 -187961993 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 284 358 80 28 chr1 54702614 54703041 -187961312 - L2 LINE L2 -355 2959 2511 254 316 0 32 chr1 54703294 54703452 -187960901 + (TCTG)n Simple_repeat Simple_repeat 2 154 0 193 194 14 14 chr1 54703460 54703532 -187960821 + CT-rich Low_complexity Low_complexity 1 72 0 239 329 27 0 chr1 54704094 54704167 -187960186 + L2 LINE L2 3237 3311 -2 435 209 45 36 chr1 54704172 54704282 -187960071 + MIR SINE MIR 20 130 -132 386 82 0 6 chr1 54704896 54704955 -187959398 - MLT2B1 LTR ERVL 0 520 388 1962 203 53 40 chr1 54705028 54705502 -187958851 - MLT2B1 LTR ERVL -40 480 1 289 158 50 30 chr1 54705675 54705776 -187958577 + GA-rich Low_complexity Low_complexity 3 105 0 272 284 15 0 chr1 54706190 54706257 -187958096 + L2 LINE L2 3200 3267 -5 * 285 224 24 71 chr1 54706253 54706338 -187958015 - MIR SINE MIR -70 138 58 251 283 82 63 chr1 54706882 54707041 -187957312 - L2 LINE L2 -183 3089 2928 227 354 0 0 chr1 54707054 54707119 -187957234 - L2 LINE L2 -6 3307 3243 293 313 82 8 chr1 54707346 54707480 -187956873 - MIR SINE MIR 0 262 119 185 292 0 0 chr1 54708056 54708104 -187956249 + MIR3 SINE MIR 126 173 -35 938 247 130 48 chr1 54708121 54708559 -187955794 - MLT1K LTR MaLR 0 476 3 272 247 56 11 chr1 54708847 54708936 -187955417 - MIR SINE MIR -52 210 118 254 291 93 0 chr1 54709012 54709098 -187955255 - L2 LINE L2 -50 3222 3129 476 524 54 19 chr1 54709774 54709898 -187954455 - L2 LINE L2 -15 3257 3139 1746 148 7 7 chr1 54709898 54710181 -187954172 + AluSx SINE Alu 1 283 -29 476 524 54 19 chr1 54710181 54710373 -187953980 - L2 LINE L2 -133 3139 2930 257 336 95 43 chr1 54710951 54711394 -187952959 + L2 LINE L2 2385 2850 -464 333 270 131 7 chr1 54711554 54711691 -187952662 + L2 LINE L2 3154 3307 -6 315 314 135 71 chr1 54711740 54711992 -187952361 + L2 LINE L2 3005 3272 0 318 341 68 8 chr1 54712049 54712181 -187952172 + MIR SINE MIR 25 164 -98 435 278 28 28 chr1 54712525 54712669 -187951684 - MIR3 SINE MIR -55 153 10 392 281 56 51 chr1 54713317 54713513 -187950840 - MIR3 SINE MIR -5 203 7 1008 176 47 0 chr1 54714207 54714400 -187949953 + MER20 DNA MER1_type 1 202 -17 260 225 17 133 chr1 54714416 54714536 -187949817 + L2 LINE L2 3208 3313 0 255 117 50 0 chr1 54714540 54714556 -187949797 + (TGAA)n Simple_repeat Simple_repeat 3 17 -48 2225 114 0 0 chr1 54714556 54714845 -187949508 + AluSg SINE Alu 1 289 -21 255 117 50 0 chr1 54714845 54714888 -187949465 + (TGAA)n Simple_repeat Simple_repeat 17 65 0 274 267 19 48 chr1 54715139 54715244 -187949109 - MIR3 SINE MIR -23 185 84 189 196 0 0 chr1 54715286 54715332 -187949021 + CT-rich Low_complexity Low_complexity 1 46 0 589 290 70 9 chr1 54715497 54715711 -187948642 - MIR SINE MIR -27 235 9 351 321 133 28 chr1 54715726 54715975 -187948378 - L2 LINE L2 -477 2837 2563 207 297 62 16 chr1 54716054 54716118 -187948235 + MIR SINE MIR 20 86 -176 1722 193 108 68 chr1 54716267 54716750 -187947603 + MLT1D LTR MaLR 1 502 -3 230 300 0 22 chr1 54716911 54717001 -187947352 + (TCTCTG)n Simple_repeat Simple_repeat 4 91 0 231 369 11 11 chr1 54717040 54717216 -187947137 + CT-rich Low_complexity Low_complexity 1 176 0 360 139 0 50 chr1 54717361 54717462 -187946891 + (TCTCCC)n Simple_repeat Simple_repeat 2 97 0 472 187 56 19 chr1 54717914 54718021 -187946332 + L2 LINE L2 3203 3313 0 189 247 202 22 chr1 54718036 54718125 -187946228 + MIR SINE MIR 49 153 -109 892 240 46 55 chr1 54718584 54718913 -187945440 + L2 LINE L2 2988 3313 0 335 200 150 40 chr1 54719008 54719108 -187945245 - MIR SINE MIR -78 130 20 300 236 67 0 chr1 54719344 54719433 -187944920 + L2 LINE L2 2310 2404 -910 443 242 152 34 chr1 54719554 54719909 -187944444 - L1ME4a LINE L1 0 6121 5725 3812 119 0 4 chr1 54719910 54720423 -187943930 + MER9 LTR ERVK 1 511 0 45704 66 6 1 chr1 54720423 54726031 -187938322 + HERVK9 LTR ERVK 1 5634 -282 2271 108 31 11 chr1 54726056 54726404 -187937949 + HERVK9 LTR ERVK 5635 5916 0 3945 101 0 8 chr1 54726404 54726919 -187937434 + MER9 LTR ERVK 1 511 0 404 246 16 25 chr1 54726966 54727088 -187937265 - MIR SINE MIR -55 207 87 1603 262 49 17 chr1 54727090 54727556 -187936797 - LTR16C LTR ERVL 0 491 11 242 314 0 14 chr1 54727556 54727626 -187936727 - MIR SINE MIR -175 87 19 661 319 35 32 chr1 54728305 54728743 -187935610 - HERV16 LTR ERVL -2944 2076 1663 609 196 14 22 chr1 54728972 54729110 -187935243 - L1M4 LINE L1 -2403 3743 3607 2369 232 68 33 chr1 54729369 54730167 -187934186 + L1M4 LINE L1 3196 4021 -2125 228 152 43 22 chr1 54730152 54730198 -187934155 + L1MC4 LINE L1 6716 6762 -1280 * 436 153 76 157 chr1 54730299 54730535 -187933818 + L1MC5 LINE L1 6859 7075 -886 2281 165 136 54 chr1 54730554 54731033 -187933320 - MLT2B1 LTR ERVL 0 520 3 444 204 116 29 chr1 54731048 54731220 -187933133 + L1MC5 LINE L1 7235 7421 -540 318 235 56 103 chr1 54731406 54731619 -187932734 + L1ME3A LINE L1 5962 6164 -6 1822 174 7 3 chr1 54731648 54731952 -187932401 + AluJb SINE Alu 1 305 -7 260 247 11 11 chr1 54732066 54732155 -187932198 - LTR33 LTR ERVL -23 498 410 628 290 149 8 chr1 54732230 54732478 -187931875 - LTR33 LTR ERVL -238 283 1 3692 152 70 61 chr1 54732500 54732602 -187931751 + L1MB1 LINE L1 5354 5454 -714 2217 121 7 7 chr1 54732602 54732909 -187931444 + AluSx SINE Alu 1 307 -5 3692 152 70 61 chr1 54732909 54733609 -187930744 + L1MB1 LINE L1 5454 6163 -5 627 312 36 8 chr1 54733636 54733883 -187930470 + L1ME LINE L1 5461 5714 -448 301 77 0 0 chr1 54733886 54733925 -187930428 + Alu SINE Alu 1 39 -264 180 222 67 0 chr1 54734440 54734485 -187929868 - MIR SINE MIR -127 135 88 1370 198 24 0 chr1 54734669 54734922 -187929431 - LTR32 LTR ERVL -198 273 15 620 230 68 7 chr1 54734922 54735070 -187929283 + MER5A DNA MER1_type 32 188 -1 2543 124 53 21 chr1 54735298 54735734 -187928619 - LTR7 LTR ERV1 0 450 1 393 250 107 0 chr1 54736962 54737074 -187927279 - L3 LINE CR1 -108 1469 1346 1523 235 45 25 chr1 54738065 54738511 -187925842 - MER20B DNA MER1_type 0 783 329 707 278 91 47 chr1 54739080 54739211 -187925142 - MER20B DNA MER1_type -448 335 211 1843 172 3 0 chr1 54739211 54739513 -187924840 + AluJb SINE Alu 1 303 -9 707 278 91 47 chr1 54739513 54739548 -187924805 - MER20B DNA MER1_type -572 211 179 2353 76 7 7 chr1 54739548 54739850 -187924503 - AluSc SINE Alu -7 302 1 707 278 91 47 chr1 54739850 54740002 -187924351 - MER20B DNA MER1_type -604 179 2 1655 241 142 2 chr1 54740294 54740725 -187923628 + LTR16C LTR ERVL 1 491 0 850 156 0 15 chr1 54741204 54741339 -187923014 - FLAM_C SINE Alu 0 133 1 1212 271 55 16 chr1 54742343 54742405 -187921948 + MER69 DNA AcHobo 46 104 -1122 2219 111 0 13 chr1 54742405 54742720 -187921633 - AluY SINE Alu 0 311 1 1212 271 55 16 chr1 54742720 54743041 -187921312 + MER69 DNA AcHobo 104 444 -782 * 2191 207 78 9 chr1 54743038 54743604 -187920749 + MER69 DNA AcHobo 1908 2512 -14 349 313 76 69 chr1 54744538 54744854 -187919499 + L2 LINE L2 1483 1806 -1508 1816 154 19 19 chr1 54744854 54745166 -187919187 - AluJb SINE Alu 0 312 1 349 313 76 69 chr1 54745166 54745441 -187918912 + L2 LINE L2 1806 2078 -1236 341 340 114 51 chr1 54745532 54745841 -187918512 + L3 LINE CR1 1088 1429 -148 433 298 184 18 chr1 54745841 54746009 -187918344 - MER91A DNA MER1_type 0 196 1 341 340 114 51 chr1 54746009 54746093 -187918260 + L3 LINE CR1 1429 1506 -71 1827 169 7 3 chr1 54746095 54746390 -187917963 + AluSx SINE Alu 1 296 -16 2315 99 0 6 chr1 54746392 54746704 -187917649 + AluSg SINE Alu 1 310 0 1640 160 32 11 chr1 54746723 54747005 -187917348 + AluJo SINE Alu 1 288 -24 30 0 0 0 chr1 54747320 54747350 -187917003 + AT_rich Low_complexity Low_complexity 1 30 0 2355 78 3 29 chr1 54747355 54747664 -187916689 - AluY SINE Alu -10 301 1 235 117 0 50 chr1 54747757 54747817 -187916536 + (GGGAGA)n Simple_repeat Simple_repeat 4 60 0 304 297 106 44 chr1 54748146 54748439 -187915914 + MLT1L LTR MaLR 240 550 -65 33 25 0 0 chr1 54748439 54748479 -187915874 + AT_rich Low_complexity Low_complexity 1 40 0 2382 151 16 3 chr1 54748679 54749051 -187915302 - MLT1B LTR MaLR 0 390 14 422 259 106 8 chr1 54749103 54749235 -187915118 - MER5B DNA MER1_type 0 178 38 1654 137 301 0 chr1 54749263 54749592 -187914761 - MSTA LTR MaLR 0 428 1 1783 107 0 8 chr1 54749793 54750037 -187914316 + AluY SINE Alu 36 277 -34 2216 201 97 4 chr1 54750244 54750706 -187913647 - MLT1D LTR MaLR 0 505 1 673 266 79 5 chr1 54751460 54751674 -187912679 + MIR SINE MIR 32 261 -1 281 297 30 10 chr1 54752494 54752595 -187911758 - MIR SINE MIR -70 138 36 198 254 48 32 chr1 54752797 54752860 -187911493 + MIR3 SINE MIR 94 157 -51 834 131 30 3 chr1 54752869 54753536 -187910817 + (TA)n Simple_repeat Simple_repeat 1 685 0 325 258 10 31 chr1 54753542 54753633 -187910720 - L1MC4 LINE L1 -1339 6703 6614 2366 68 0 10 chr1 54753633 54753925 -187910428 - AluSc SINE Alu -20 289 1 341 299 18 36 chr1 54754404 54754571 -187909782 + L1ME3A LINE L1 22 185 -6211 570 283 99 17 chr1 54754805 54755098 -187909255 + L1ME3A LINE L1 3699 4015 -2200 * 862 190 64 102 chr1 54755081 54755454 -187908899 - L1MC5 LINE L1 -15 7946 7588 1093 184 102 109 chr1 54755500 54756069 -187908284 - L1MC5 LINE L1 -491 7470 6906 2066 206 30 44 chr1 54756081 54756585 -187907768 + MLT1D LTR MaLR 1 497 -8 201 171 0 0 chr1 54756649 54756684 -187907669 + T-rich Low_complexity Low_complexity 1 35 0 7472 55 16 30 chr1 54756685 54758229 -187906124 - SVA Other Other -604 1386 2 2398 86 3 7 chr1 54758500 54758803 -187905550 + AluSg SINE Alu 1 302 -8 423 270 101 65 chr1 54758803 54759329 -187905024 + L1ME3A LINE L1 4575 5119 -1096 926 168 50 0 chr1 54759373 54759534 -187904819 - AluJb SINE Alu -14 298 130 1411 157 0 0 chr1 54759638 54759848 -187904505 + AluJb SINE Alu 1 210 -102 2072 89 10 111 chr1 54759848 54760008 -187904345 - THE1A LTR MaLR 0 355 180 2688 39 3 9 chr1 54760008 54760342 -187904011 - L1PA7 LINE L1 -2 6152 5821 2072 89 10 111 chr1 54760342 54760576 -187903777 - THE1A LTR MaLR -175 180 1 11320 96 15 1 chr1 54760576 54762135 -187902218 - THE1A-int LTR MaLR 0 1580 1 2200 131 17 3 chr1 54762135 54762485 -187901868 - THE1A LTR MaLR 0 355 1 400 192 30 30 chr1 54762485 54762584 -187901769 + AluSg/x SINE Alu 203 301 -8 313 336 79 9 chr1 54762707 54763025 -187901328 + L1ME LINE L1 5292 5631 -531 940 252 111 70 chr1 54763028 54763974 -187900379 + L1ME3A LINE L1 5232 6231 -8 188 202 211 67 chr1 54764224 54764328 -187900025 + MIR SINE MIR 18 136 -72 237 164 98 16 chr1 54764374 54764435 -187899918 - MIR SINE MIR -109 153 88 370 325 178 51 chr1 54764457 54765063 -187899290 + L1M2 LINE L1 379 1061 -5788 300 364 38 30 chr1 54766897 54767029 -187897324 - MIR3 SINE MIR -9 199 67 258 56 0 0 chr1 54767438 54767474 -187896879 + (TA)n Simple_repeat Simple_repeat 2 37 0 280 183 98 24 chr1 54767477 54767559 -187896794 - L1MC4a LINE L1 -1879 5929 5842 290 209 124 52 chr1 54767595 54767805 -187896548 - L1MC4 LINE L1 -9 8033 7809 972 200 6 0 chr1 54767806 54767971 -187896382 + FAM SINE Alu 1 166 -9 287 239 85 81 chr1 54767989 54768236 -187896117 - L1MC5 LINE L1 -246 7715 7468 362 247 0 0 chr1 54768258 54768355 -187895998 - L1ME2 LINE L1 -67 6097 6001 491 164 0 19 chr1 54768386 54768490 -187895863 + L1MA7 LINE L1 6164 6265 -26 897 183 53 0 chr1 54768503 54768711 -187895642 + L1ME2 LINE L1 5760 5978 -186 2438 158 69 46 chr1 54768739 54769473 -187894880 - L1M2 LINE L1 -529 5783 5115 21 36 0 0 chr1 54769956 54769984 -187894369 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chr1 54770232 54770281 -187894072 + AT_rich Low_complexity Low_complexity 1 49 0 189 203 108 54 chr1 54770370 54770444 -187893909 + L2 LINE L2 446 523 -2791 341 318 64 61 chr1 54770534 54770798 -187893555 - L1ME2 LINE L1 -214 5950 5686 1161 225 87 51 chr1 54770821 54771429 -187892924 + MER20B DNA MER1_type 3 699 -84 841 194 83 19 chr1 54771516 54771732 -187892621 - MLT1C LTR MaLR -4 463 234 582 214 110 71 chr1 54772102 54772491 -187891862 - L1ME3A LINE L1 -113 6040 5637 531 271 72 127 chr1 54772538 54772601 -187891752 - L1ME3A LINE L1 -1907 4222 4157 243 0 0 0 chr1 54772601 54772628 -187891725 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 531 271 72 127 chr1 54772628 54773132 -187891221 - L1ME3A LINE L1 -1972 4157 3686 443 287 58 16 chr1 54773343 54773531 -187890822 - L1ME3A LINE L1 -3095 3034 2839 218 184 0 0 chr1 54773585 54773623 -187890730 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2696 159 39 29 chr1 54773665 54774175 -187890178 - MLT2B2 LTR ERVL 0 515 1 319 369 71 11 chr1 54774187 54774455 -187889898 - L1ME3A LINE L1 -3371 2758 2475 6345 33 0 0 chr1 54774581 54775332 -187889021 - L1PA3 LINE L1 -1 6154 5404 4047 21 4 0 chr1 54775333 54775845 -187888508 + L1PA3 LINE L1 4888 5401 -745 271 211 55 83 chr1 54775836 54775945 -187888408 - L1ME3A LINE L1 -4933 1186 1081 * 234 146 24 0 chr1 54775972 54776013 -187888340 - MER57A LTR ERV1 -67 336 295 28 95 0 0 chr1 54776020 54776104 -187888249 + AT_rich Low_complexity Low_complexity 1 84 0 851 248 70 57 chr1 54776200 54776603 -187887750 - L1M4 LINE L1 -1830 4814 4407 1790 173 17 7 chr1 54776672 54776961 -187887392 + AluJo SINE Alu 1 292 -20 1690 238 70 40 chr1 54776965 54777674 -187886679 - L1M4 LINE L1 -3162 3482 2752 2013 148 37 22 chr1 54777680 54777709 -187886644 - L1MB7 LINE L1 -20 6164 6137 2114 128 0 3 chr1 54777709 54778014 -187886339 - AluSg SINE Alu -6 304 1 2013 148 37 22 chr1 54778014 54778389 -187885964 - L1MB7 LINE L1 -47 6137 5754 238 209 75 0 chr1 54778389 54778456 -187885897 + LTR60 LTR ERV1 1 72 -514 515 185 0 19 chr1 54778500 54778608 -187885745 - L1MB7 LINE L1 -279 5905 5800 * 3249 233 93 51 chr1 54778590 54779481 -187884872 - L1M4 LINE L1 -3911 2735 1882 2236 121 0 0 chr1 54779481 54779786 -187884567 - AluSx SINE Alu -5 307 3 3249 233 93 51 chr1 54779786 54779858 -187884495 - L1M4 LINE L1 -4764 1882 1814 496 128 0 0 chr1 54779858 54779936 -187884417 - FLAM_A SINE Alu -12 130 53 3249 233 93 51 chr1 54779936 54780950 -187883403 - L1M4 LINE L1 -4832 1814 586 307 250 29 48 chr1 54780951 54781055 -187883298 - L1MEc LINE L1 -4162 2234 2133 964 201 56 56 chr1 54781162 54781258 -187883095 - MER33 DNA MER1_type -2261 324 229 2210 94 7 13 chr1 54781258 54781556 -187882797 + AluY SINE Alu 1 296 -15 964 201 56 56 chr1 54781556 54781783 -187882570 - MER33 DNA MER1_type -2355 230 1 273 204 0 0 chr1 54782077 54782126 -187882227 - MIR SINE MIR -34 228 180 262 308 15 69 chr1 54782129 54782259 -187882094 + MIR3 SINE MIR 73 195 -13 375 73 0 0 chr1 54782878 54782933 -187881420 + Alu SINE Alu 245 299 -3 264 224 0 0 chr1 54783044 54783111 -187881242 + CT-rich Low_complexity Low_complexity 2 68 0 352 287 56 0 chr1 54783118 54783226 -187881127 - L2 LINE L2 -20 3293 3180 2200 114 0 0 chr1 54784254 54784553 -187879800 + AluSx SINE Alu 1 299 -13 273 230 0 0 chr1 54784651 54784725 -187879628 + CT-rich Low_complexity Low_complexity 3 76 0 1000 298 114 7 chr1 54784725 54785155 -187879198 - L2 LINE L2 -20 3293 2818 996 221 53 135 chr1 54786933 54787890 -187876463 - L1MC5 LINE L1 -66 7895 7017 * 1545 203 38 44 chr1 54787887 54788360 -187875993 - L1ME1 LINE L1 -5 6161 5692 1290 167 0 41 chr1 54788373 54788618 -187875735 - Tigger4(Zombi) DNA MER2_type -2496 235 1 1338 159 5 9 chr1 54788662 54788876 -187875477 - AluJb SINE Alu -15 297 85 467 141 0 0 chr1 54788931 54789002 -187875351 - U4 snRNA snRNA -74 71 1 1249 229 53 33 chr1 54789002 54789336 -187875017 - L1M4 LINE L1 -3118 3028 2677 2265 133 46 50 chr1 54789336 54789407 -187874946 - Tigger2a DNA MER2_type -2274 434 364 2111 126 0 0 chr1 54789407 54789701 -187874652 - AluSx SINE Alu -18 294 1 2265 133 46 50 chr1 54789701 54790065 -187874288 - Tigger2a DNA MER2_type -2344 364 1 1249 229 53 33 chr1 54790065 54790275 -187874078 - L1M4 LINE L1 -3469 2677 2473 1427 237 175 53 chr1 54790277 54790953 -187873400 + LTR41 LTR ERVL 8 765 -8 2576 52 10 0 chr1 54791250 54791556 -187872797 - AluY SINE Alu -2 309 1 26 30 0 0 chr1 54791933 54791966 -187872387 + AT_rich Low_complexity Low_complexity 1 33 0 670 99 0 10 chr1 54792080 54792181 -187872172 - LTR12 LTR ERV1 0 714 615 374 264 16 0 chr1 54792183 54792308 -187872045 - LTR30 LTR ERV1 -79 643 517 1384 146 164 10 chr1 54792308 54792791 -187871562 - LTR12 LTR ERV1 -439 1999 58 235 250 0 0 chr1 54792791 54792843 -187871510 - LTR30 LTR ERV1 -670 52 1 5212 99 3 4 chr1 54792846 54793616 -187870737 - HERV9 LTR ERV1 -4 8395 7627 2191 175 112 55 chr1 54793615 54794466 -187869887 - HERV9 LTR ERV1 -5156 1740 842 * 5964 105 0 12 chr1 54794435 54795341 -187869012 - HERV9 LTR ERV1 -3425 4974 4080 12793 112 23 12 chr1 54795348 54797461 -187866892 - HERV9 LTR ERV1 -5260 3139 1082 7681 121 1 8 chr1 54797459 54798653 -187865700 - HERV9 LTR ERV1 -7157 1242 58 * 700 128 47 74 chr1 54798631 54798780 -187865573 - pTR5 LTR ERV1 -1994 444 300 * 338 211 11 0 chr1 54798780 54798870 -187865483 - LTR30 LTR ERV1 -80 642 552 1009 86 154 0 chr1 54798870 54799032 -187865321 - LTR12 LTR ERV1 -429 285 99 1245 204 209 18 chr1 54801229 54801684 -187862669 - pTR5 LTR ERV1 -502 1936 1395 229 250 0 0 chr1 54801684 54801736 -187862617 - LTR30 LTR ERV1 -670 52 1 46 62 0 0 chr1 54801903 54801984 -187862369 + AT_rich Low_complexity Low_complexity 1 81 0 526 221 24 16 chr1 54802289 54802416 -187861937 + L2 LINE L2 2955 3082 -231 345 213 177 98 chr1 54802569 54802733 -187861620 + L2 LINE L2 3115 3291 -22 8756 192 84 13 chr1 54803624 54804801 -187859552 - L1MB3 LINE L1 -3 6416 5324 1875 172 3 0 chr1 54804801 54805109 -187859244 - AluJb SINE Alu -3 309 1 8756 192 84 13 chr1 54805109 54808013 -187856340 - L1MB3 LINE L1 -1095 5324 97 690 191 0 0 chr1 54808030 54808171 -187856182 + (CA)n Simple_repeat Simple_repeat 1 141 0 1226 146 72 128 chr1 54808176 54808484 -187855869 + Tigger2 DNA MER2_type 1 325 -2393 2177 96 7 0 chr1 54808484 54808765 -187855588 - AluSp SINE Alu -30 283 1 1226 146 72 128 chr1 54808765 54808859 -187855494 + Tigger2 DNA MER2_type 325 423 -2295 1878 156 6 44 chr1 54808859 54809219 -187855134 + L1PA16 LINE L1 5808 6153 -13 1226 146 72 128 chr1 54809219 54809286 -187855067 + Tigger2 DNA MER2_type 423 2718 0 1708 181 0 14 chr1 54809716 54810008 -187854345 + AluJo SINE Alu 7 294 -18 31 26 0 0 chr1 54810264 54810302 -187854051 + AT_rich Low_complexity Low_complexity 1 38 0 1401 233 55 66 chr1 54810746 54811442 -187852911 - L1M4 LINE L1 -787 5359 4672 318 295 25 0 chr1 54811459 54811581 -187852772 - L1ME3 LINE L1 -25 6137 6013 * 7083 120 16 6 chr1 54811580 54813081 -187851272 + L1MA1 LINE L1 4788 6302 0 1947 127 47 3 chr1 54813091 54813390 -187850963 + AluSq SINE Alu 1 312 -1 1485 235 59 30 chr1 54813404 54813453 -187850900 - L1ME3 LINE L1 -135 6027 5981 2256 113 3 0 chr1 54813453 54813763 -187850590 - AluSp SINE Alu -2 311 1 1485 235 59 30 chr1 54813763 54814173 -187850180 - L1ME3 LINE L1 -181 5981 5555 346 310 17 47 chr1 54815016 54815248 -187849105 - L1M4 LINE L1 -1565 4581 4357 2622 174 6 10 chr1 54815592 54816105 -187848248 - L1MA6 LINE L1 0 6300 5790 3104 181 76 21 chr1 54816270 54816944 -187847409 - MER21B LTR ERV1 -19 844 134 255 114 0 0 chr1 54816981 54817016 -187847337 - MER21B LTR ERV1 -826 37 3 237 350 87 35 chr1 54817198 54817564 -187846789 + L2 LINE L2 1380 1764 -1550 249 192 137 14 chr1 54817690 54817763 -187846590 + MIR SINE MIR 104 185 -77 710 190 4 14 chr1 54818000 54818221 -187846132 + CT-rich Low_complexity Low_complexity 1 219 0 1458 160 21 69 chr1 54818222 54818510 -187845843 - AluJb SINE Alu -36 276 3 212 111 22 22 chr1 54819031 54819076 -187845277 + A-rich Low_complexity Low_complexity 1 45 0 2063 88 0 48 chr1 54819082 54819404 -187844949 - AluSg SINE Alu 0 308 1 242 208 65 39 chr1 54819417 54819494 -187844859 - L1MC5 LINE L1 -369 7592 7514 762 295 141 19 chr1 54819638 54820393 -187843960 - L1M4 LINE L1 -1797 4349 3497 218 146 42 0 chr1 54820428 54820476 -187843877 + (CATA)n Simple_repeat Simple_repeat 3 52 0 4220 168 39 56 chr1 54820597 54820730 -187843623 - L1MCb LINE L1 -4840 1724 1590 1805 154 11 0 chr1 54820730 54821016 -187843337 - AluJb SINE Alu -22 290 2 4220 168 39 56 chr1 54821016 54821456 -187842897 - L1MCb LINE L1 -4974 1590 1144 2302 146 13 72 chr1 54821456 54821929 -187842424 + MER65A LTR ERV1 1 445 0 4220 168 39 56 chr1 54821929 54822424 -187841929 - L1MCb LINE L1 -5420 1144 466 237 158 0 0 chr1 54822395 54822433 -187841920 - L1MCa LINE L1 -5816 748 711 * 277 177 13 63 chr1 54822437 54822516 -187841837 - L1MCa LINE L1 -5506 539 465 * 1743 201 18 15 chr1 54822489 54822817 -187841536 - L1MCa LINE L1 -5819 607 279 982 125 0 0 chr1 54822817 54822961 -187841392 + Tigger2 DNA MER2_type 602 745 -1973 1445 147 37 0 chr1 54823022 54823267 -187841086 + Tigger2 DNA MER2_type 2462 2715 -3 2209 87 0 45 chr1 54823336 54823645 -187840708 + AluSc SINE Alu 1 295 -14 294 239 17 17 chr1 54823829 54823946 -187840407 + (TATAA)n Simple_repeat Simple_repeat 3 119 0 2335 96 0 0 chr1 54824019 54824311 -187840042 + AluSx SINE Alu 1 292 -20 1926 127 24 10 chr1 54824778 54825069 -187839284 + AluSq SINE Alu 1 295 -18 250 208 14 28 chr1 54825789 54825861 -187838492 + CT-rich Low_complexity Low_complexity 2 72 0 280 264 47 16 chr1 54825864 54825993 -187838360 + L1ME LINE L1 5363 5495 -671 1970 148 21 29 chr1 54826029 54826407 -187837946 + THE1C LTR MaLR 1 375 0 11651 95 5 1 chr1 54826407 54827980 -187836373 + THE1C-int LTR MaLR 1 1580 0 1749 160 87 29 chr1 54827980 54828324 -187836029 + THE1B LTR MaLR 1 364 0 252 290 40 0 chr1 54828353 54828477 -187835876 + L1ME LINE L1 5671 5799 -363 22 35 0 0 chr1 54829124 54829153 -187835200 + AT_rich Low_complexity Low_complexity 1 29 0 334 163 105 0 chr1 54830134 54830220 -187834133 + MIR SINE MIR 164 258 -4 362 314 44 66 chr1 54830274 54830411 -187833942 + L2 LINE L2 3139 3272 0 1024 193 0 47 chr1 54830453 54830686 -187833667 + MLT2C2 LTR ERVL 1 222 -242 664 148 0 0 chr1 54830688 54830796 -187833557 - AluJb SINE Alu -7 305 198 252 280 52 116 chr1 54830854 54831104 -187833249 + MLT1F1-int LTR MaLR 1138 1371 0 2052 240 54 11 chr1 54831104 54831642 -187832711 + MLT1F1 LTR MaLR 3 563 -4 308 253 116 0 chr1 54831711 54831806 -187832547 + MLT1F1 LTR MaLR 56 161 -406 1460 197 4 4 chr1 54832295 54832549 -187831804 + AluJo SINE Alu 1 254 -58 526 111 11 0 chr1 54832573 54832663 -187831690 - L1MA8 LINE L1 -8 6283 6193 23 33 0 0 chr1 54832752 54832782 -187831571 + AT_rich Low_complexity Low_complexity 1 30 0 1444 182 62 28 chr1 54833750 54834041 -187830312 - AluJo SINE Alu -1 301 1 361 192 0 14 chr1 54834599 54834672 -187829681 - L1ME3A LINE L1 0 6170 6099 231 36 0 0 chr1 54834767 54834795 -187829558 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 187 250 104 0 chr1 54834912 54834960 -187829393 + MIR SINE MIR 162 214 -48 254 288 176 75 chr1 54835063 54835449 -187828904 - MLT1H LTR MaLR 0 549 125 182 267 0 0 chr1 54835978 54836023 -187828330 + MIR3 SINE MIR 164 208 0 25 0 0 0 chr1 54837963 54837988 -187826365 + AT_rich Low_complexity Low_complexity 1 25 0 1782 173 56 6 chr1 54839565 54839959 -187824394 - L1MB5 LINE L1 0 6180 5761 4070 158 45 74 chr1 54839987 54841065 -187823288 - L1MB3 LINE L1 0 6183 5146 418 192 62 48 chr1 54842752 54842876 -187821477 - L1MD3 LINE L1 0 8042 7904 1630 209 16 22 chr1 54842933 54843302 -187821051 + MLT1A2 LTR MaLR 4 370 -4 2440 213 92 5 chr1 54843324 54843973 -187820380 - L1MC4 LINE L1 -242 7800 7095 187 247 27 82 chr1 54844317 54844390 -187819963 - MIR3 SINE MIR -129 79 11 23 0 0 0 chr1 54844419 54844442 -187819911 + AT_rich Low_complexity Low_complexity 1 23 0 217 300 0 17 chr1 54844954 54845014 -187819339 - MIR SINE MIR -67 141 83 23 0 0 0 chr1 54845140 54845163 -187819190 + AT_rich Low_complexity Low_complexity 1 23 0 1665 163 7 40 chr1 54845552 54845853 -187818500 - AluJb SINE Alu -19 293 3 3300 153 54 13 chr1 54846233 54846904 -187817449 - L1MA4A LINE L1 -11 6292 5595 11620 220 30 29 chr1 54846904 54847793 -187816560 - L1M2 LINE L1 -3994 2855 1968 1625 122 157 0 chr1 54847793 54848055 -187816298 + AluSq SINE Alu 1 303 0 11620 220 30 29 chr1 54848055 54848068 -187816285 - L1M2 LINE L1 -4881 1968 1957 989 165 0 0 chr1 54848068 54848226 -187816127 + FRAM SINE Alu 4 161 -5 11620 220 30 29 chr1 54848226 54849633 -187814720 - L1M2 LINE L1 -4892 1957 540 2257 115 48 28 chr1 54849633 54849990 -187814363 + THE1B LTR MaLR 1 364 0 11620 220 30 29 chr1 54849990 54850524 -187813829 - L1M2 LINE L1 -6309 540 8 280 335 43 58 chr1 54850708 54850896 -187813457 - MIR SINE MIR -28 234 50 358 271 119 0 chr1 54850969 54851087 -187813266 - MIR SINE MIR -43 219 88 1016 218 172 27 chr1 54851937 54852345 -187812008 + MER113 DNA MER1_type? 7 473 -48 357 86 0 0 chr1 54852511 54852569 -187811784 + (TCTCCC)n Simple_repeat Simple_repeat 6 63 0 267 206 0 16 chr1 54852587 54852650 -187811703 + (CTG)n Simple_repeat Simple_repeat 3 64 0 252 0 0 0 chr1 54852668 54852696 -187811657 + (CG)n Simple_repeat Simple_repeat 1 28 0 6322 74 26 47 chr1 54852838 54854365 -187809988 + SVA Other Other 240 1380 -6 222 214 0 0 chr1 54854371 54854427 -187809926 + A-rich Low_complexity Low_complexity 1 56 0 242 345 12 12 chr1 54854665 54854749 -187809604 + MER5A DNA MER1_type 84 167 -22 2170 124 11 40 chr1 54854843 54855190 -187809163 + MER1B DNA MER1_type 1 337 0 207 361 46 19 chr1 54855325 54855433 -187808920 + L2 LINE L2 3177 3287 -26 683 142 122 0 chr1 54855991 54856139 -187808214 - L1MA9 LINE L1 0 6312 6147 286 244 37 0 chr1 54856322 54856404 -187807949 - MER113 DNA MER1_type? -435 86 2 2086 144 9 57 chr1 54856457 54856669 -187807684 - L1MA7 LINE L1 -160 6131 5947 1849 120 68 55 chr1 54856669 54857036 -187807317 + THE1C LTR MaLR 1 372 -3 2086 144 9 57 chr1 54857036 54857247 -187807106 - L1MA7 LINE L1 -344 5947 5728 2658 99 0 0 chr1 54857275 54857630 -187806723 + THE1A LTR MaLR 1 355 0 256 365 15 15 chr1 54857900 54858037 -187806316 - MLT1J2 LTR MaLR -11 439 303 263 291 74 57 chr1 54858080 54858255 -187806098 - MLT1I LTR MaLR -195 214 37 246 321 44 38 chr1 54858341 54858500 -187805853 - L2 LINE L2 -34 3279 3120 573 356 50 24 chr1 54858619 54859038 -187805315 - L2 LINE L2 -358 2956 2527 1944 159 19 3 chr1 54859085 54859406 -187804947 + MER7A DNA MER2_type 18 341 -5 22 0 0 0 chr1 54860192 54860214 -187804139 + AT_rich Low_complexity Low_complexity 1 22 0 788 242 78 7 chr1 54861087 54861356 -187802997 - MER110 LTR ERV1 -32 459 172 227 192 14 110 chr1 54861477 54861550 -187802803 - MER110A LTR ERV1 -298 170 105 375 298 54 44 chr1 54861646 54861851 -187802502 - L1M4 LINE L1 -1667 4479 4273 235 292 104 0 chr1 54861993 54862089 -187802264 + MLT1J1 LTR MaLR 54 159 -287 2431 104 23 0 chr1 54862119 54862466 -187801887 + THE1A LTR MaLR 1 355 0 11445 89 21 1 chr1 54862466 54864014 -187800339 + THE1A-int LTR MaLR 1 1580 0 2560 110 3 0 chr1 54864014 54864368 -187799985 + THE1A LTR MaLR 1 355 0 547 252 124 45 chr1 54864674 54864752 -187799601 - L1M4 LINE L1 -2107 4039 3969 423 0 0 0 chr1 54864752 54864799 -187799554 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 547 252 124 45 chr1 54864799 54865140 -187799213 - L1M4 LINE L1 -2177 3969 3587 390 252 8 55 chr1 54865304 54865431 -187798922 + MIR SINE MIR 101 221 -41 187 159 23 23 chr1 54865869 54865913 -187798440 + L2 LINE L2 3270 3313 0 43440 44 5 1 chr1 54866140 54872266 -187792087 + L1PA3 LINE L1 1 6152 -3 21 0 0 0 chr1 54872266 54872287 -187792066 + AT_rich Low_complexity Low_complexity 1 21 0 308 345 125 2 chr1 54872519 54872708 -187791645 - MIR SINE MIR -30 232 18 1059 168 0 0 chr1 54873786 54873953 -187790400 - FRAM SINE Alu 0 176 10 249 323 40 20 chr1 54874360 54874459 -187789894 - MIR SINE MIR -93 169 69 388 206 196 0 chr1 54874460 54874562 -187789791 + L2 LINE L2 3188 3309 -4 * 2211 286 160 32 chr1 54874561 54875793 -187788560 + L2 LINE L2 1807 3192 -121 233 106 0 21 chr1 54876238 54876285 -187788068 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 60 64 0 0 chr1 54877637 54877746 -187786607 + AT_rich Low_complexity Low_complexity 1 109 0 28 0 0 0 chr1 54878803 54878831 -187785522 + AT_rich Low_complexity Low_complexity 1 28 0 2134 88 32 0 chr1 54879280 54879563 -187784790 + AluSg SINE Alu 14 305 -5 22 88 0 0 chr1 54879635 54879692 -187784661 + AT_rich Low_complexity Low_complexity 1 57 0 1555 220 101 75 chr1 54881134 54882337 -187782016 - L1ME3A LINE L1 -5 6234 5018 790 216 195 0 chr1 54882343 54882635 -187781718 - L1ME3A LINE L1 -3596 2619 2271 636 270 129 51 chr1 54882957 54883606 -187780747 - L1ME3A LINE L1 -4616 1780 1081 4654 222 129 30 chr1 54883680 54883722 -187780631 + L1MC3 LINE L1 3389 3425 -2721 2094 124 48 25 chr1 54883722 54884078 -187780275 + THE1B LTR MaLR 1 364 0 4654 222 129 30 chr1 54884078 54886742 -187777611 + L1MC3 LINE L1 3425 5399 -747 978 216 56 26 chr1 54886742 54887010 -187777343 - MER58B DNA MER1_type 0 341 66 2304 239 41 35 chr1 54887043 54887781 -187776572 + L1MD3 LINE L1 6367 7108 -887 317 185 0 120 chr1 54887802 54887894 -187776459 + MLT1F1 LTR MaLR 45 125 -442 927 207 74 118 chr1 54887925 54888383 -187775970 - LTR8A LTR ERV1 0 727 290 38 68 0 0 chr1 54888478 54888551 -187775802 + AT_rich Low_complexity Low_complexity 1 73 0 412 107 71 0 chr1 54888554 54888666 -187775687 + (TA)n Simple_repeat Simple_repeat 1 120 0 15168 178 33 10 chr1 54888667 54891754 -187772599 - L1P LINE L1 -1064 5082 1921 749 131 0 0 chr1 54891754 54891861 -187772492 - U6 snRNA snRNA 0 107 1 15168 178 33 10 chr1 54891861 54891875 -187772478 - L1P LINE L1 -4225 1921 1909 357 285 132 0 chr1 54891890 54892125 -187772228 - L1MEc LINE L1 -3985 2736 2471 313 189 54 101 chr1 54892301 54892449 -187771904 - L1MC5 LINE L1 -516 7445 7305 584 186 76 91 chr1 54892655 54892918 -187771435 - L1MC5 LINE L1 -925 7036 6778 672 246 183 4 chr1 54893241 54893431 -187770922 - L1ME3A LINE L1 -53 6117 5962 2006 103 0 4 chr1 54893431 54893702 -187770651 - AluY SINE Alu -7 304 35 672 246 183 4 chr1 54893702 54893779 -187770574 - L1ME3A LINE L1 -208 5962 5802 743 293 42 9 chr1 54893784 54893996 -187770357 + MER58A DNA MER1_type 6 224 0 568 291 89 26 chr1 54894042 54894116 -187770237 - L1ME3A LINE L1 -435 5735 5667 3792 179 39 8 chr1 54894116 54894827 -187769526 - MER44D DNA MER2_type 0 605 1 568 291 89 26 chr1 54894827 54894986 -187769367 - L1ME3A LINE L1 -503 5667 5473 195 42 0 0 chr1 54894986 54895010 -187769343 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 568 291 89 26 chr1 54895010 54895068 -187769285 - L1ME3A LINE L1 -697 5473 5420 * 596 260 48 12 chr1 54895059 54895309 -187769044 - L1MEd LINE L1 -3657 2883 2625 207 0 0 0 chr1 54895798 54895821 -187768532 + (T)n Simple_repeat Simple_repeat 1 23 0 439 276 75 49 chr1 54895821 54896561 -187767792 - L1MEd LINE L1 -909 1992 1233 1826 280 133 21 chr1 54897905 54899265 -187765088 - L1ME3A LINE L1 -1302 4844 3332 17631 199 19 11 chr1 54899280 54902502 -187761851 - L1PA15 LINE L1 -13 7590 4308 1755 229 56 81 chr1 54902502 54903070 -187761283 - MLT2B3 LTR ERVL 0 554 1 17631 199 19 11 chr1 54903070 54905076 -187759277 - L1PA15 LINE L1 -3295 4308 2319 458 291 51 57 chr1 54906126 54906477 -187757876 - L1PA15 LINE L1 -7226 355 7 971 249 91 13 chr1 54906692 54907078 -187757275 - L1ME3A LINE L1 -3055 3091 2676 1667 215 107 33 chr1 54907287 54908102 -187756251 - L1MB7 LINE L1 -1 6183 5260 * 4054 190 44 25 chr1 54908098 54909895 -187754458 - L1PB4 LINE L1 -14 7580 5743 8127 171 34 22 chr1 54911091 54911818 -187752535 - L1PB4 LINE L1 -1871 5713 4996 1835 172 0 25 chr1 54911818 54912132 -187752221 + AluJb SINE Alu 6 311 -1 8127 171 34 22 chr1 54912132 54912493 -187751860 - L1PB4 LINE L1 -2588 4996 4641 6826 66 0 2 chr1 54912493 54913833 -187750520 - L1PA7 LINE L1 -3 6151 4810 8127 171 34 22 chr1 54913833 54914803 -187749550 - L1PB4 LINE L1 -2943 4641 3684 200 33 0 33 chr1 54914803 54914833 -187749520 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8127 171 34 22 chr1 54914833 54915954 -187748399 - L1PB4 LINE L1 -3900 3684 2508 889 308 42 46 chr1 54916086 54916656 -187747697 - L1PB4 LINE L1 -6430 1155 21 * 5407 224 57 14 chr1 54916644 54918388 -187745965 - L1M4 LINE L1 -836 5310 3492 * 39739 53 9 1 chr1 54918379 54924480 -187739873 - L1PA4 LINE L1 -1 6154 7 1922 248 65 30 chr1 54924497 54925412 -187738941 - L1M4 LINE L1 -2642 3504 2558 320 113 0 19 chr1 54925435 54925488 -187738865 + MLT2D LTR ERVL 363 414 0 248 314 12 0 chr1 54925491 54925577 -187738776 + L1MCa LINE L1 534 620 -6024 2195 225 74 60 chr1 54925581 54926992 -187737361 + L1M4 LINE L1 -110 1432 -4848 934 218 0 0 chr1 54927009 54927174 -187737179 + FRAM SINE Alu 1 156 -20 1403 256 76 32 chr1 54927183 54928425 -187735928 + L1M4 LINE L1 1445 2840 -3542 316 228 43 0 chr1 54928429 54928521 -187735832 + L1MCa LINE L1 1013 1108 -5434 273 227 0 0 chr1 54928654 54928720 -187735633 + (TA)n Simple_repeat Simple_repeat 1 66 0 321 196 0 62 chr1 54928846 54928943 -187735410 + L1MA9 LINE L1 6182 6272 -40 222 243 14 14 chr1 54930384 54930454 -187733899 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 2260 65 33 4 chr1 54931575 54931948 -187732405 + MER11A LTR ERVK 1 477 -789 287 233 12 0 chr1 54932048 54932134 -187732219 + L1MA9 LINE L1 5703 5789 -502 183 205 0 0 chr1 54932182 54932221 -187732132 + (TG)n Simple_repeat Simple_repeat 2 40 0 1303 234 23 71 chr1 54932226 54932744 -187731609 + L1MA9 LINE L1 5782 6274 -38 284 239 43 0 chr1 54935332 54935424 -187728929 + L1MCa LINE L1 1013 1108 -5434 246 182 0 0 chr1 54935558 54935624 -187728729 + (TA)n Simple_repeat Simple_repeat 1 66 0 325 232 130 32 chr1 54935891 54936137 -187728216 + L1MCa LINE L1 2686 2955 -3689 24 53 0 0 chr1 54937437 54937475 -187726878 + AT_rich Low_complexity Low_complexity 1 38 0 813 159 0 15 chr1 54938328 54938460 -187725893 + FLAM_C SINE Alu 1 130 -13 655 193 77 89 chr1 54939045 54939188 -187725165 + L1M4b LINE L1 11 151 -6708 3767 119 33 9 chr1 54939188 54939833 -187724520 + L1MA4 LINE L1 5635 6294 -6 655 193 77 89 chr1 54939833 54939948 -187724405 + L1M4b LINE L1 151 266 -6593 559 308 65 18 chr1 54940176 54940455 -187723898 + L1M4b LINE L1 897 1188 -5667 1257 137 22 70 chr1 54940485 54940755 -187723598 + L1PB4 LINE L1 5897 6153 -3 341 157 86 33 chr1 54940858 54940980 -187723373 + L1M4b LINE L1 1322 1445 -5410 7460 163 45 18 chr1 54940990 54942638 -187721715 - L1 LINE L1 -1052 5094 3403 341 267 133 25 chr1 54943082 54943202 -187721151 + MIR SINE MIR 2 134 -128 382 304 0 10 chr1 54943313 54943415 -187720938 - MIR SINE MIR -125 137 37 2219 109 3 3 chr1 54943430 54943734 -187720619 - AluSp SINE Alu -4 309 6 235 318 100 9 chr1 54943899 54944009 -187720344 + L2 LINE L2 3180 3299 -14 292 296 122 17 chr1 54945576 54945691 -187718662 + MIR3 SINE MIR 33 159 -49 393 22 0 0 chr1 54945798 54945844 -187718509 + (CA)n Simple_repeat Simple_repeat 2 47 0 206 319 0 14 chr1 54946009 54946078 -187718275 + L2 LINE L2 3241 3308 -5 292 298 145 40 chr1 54946984 54947108 -187717245 + MIR3 SINE MIR 71 207 -1 3204 145 53 3 chr1 54947225 54947825 -187716528 - L1MB7 LINE L1 -7 6177 5548 1899 145 0 0 chr1 54948592 54948861 -187715492 + AluSx SINE Alu 1 269 -43 334 294 49 14 chr1 54949438 54949581 -187714772 + L1MA9 LINE L1 1083 1230 -5797 367 333 33 13 chr1 54949701 54949851 -187714502 + L1MA9 LINE L1 1164 1316 -5721 862 230 36 29 chr1 54950754 54951073 -187713280 + L1MA9 LINE L1 1850 2184 -4853 1059 157 10 0 chr1 54951077 54951275 -187713078 + L1PBa LINE L1 1 200 -6663 * 2527 98 18 40 chr1 54951267 54951766 -187712587 + L1PBa LINE L1 625 1155 -5708 19140 92 4 6 chr1 54951812 54954603 -187709750 - L1P LINE L1 -3349 2797 12 2249 207 34 4 chr1 54954617 54955154 -187709199 + L1MA9 LINE L1 4543 5095 -2011 2339 146 37 15 chr1 54955154 54955564 -187708789 - MSTB LTR MaLR 0 426 8 2273 149 33 35 chr1 54955565 54955919 -187708434 + MSTA LTR MaLR 1 355 -73 2198 110 7 10 chr1 54955919 54956220 -187708133 - AluSq SINE Alu -13 300 1 2273 149 33 35 chr1 54956220 54956294 -187708059 + MSTA LTR MaLR 355 428 0 3320 187 46 13 chr1 54956305 54957071 -187707282 + L1MA9 LINE L1 5091 5881 -1225 11997 108 7 25 chr1 54957072 54959253 -187705100 + L1PA7 LINE L1 1 2173 -4288 2337 107 0 3 chr1 54959265 54959575 -187704778 - AluSc SINE Alu 0 309 1 26 0 0 0 chr1 54959603 54959629 -187704724 + AT_rich Low_complexity Low_complexity 1 26 0 42992 41 1 1 chr1 54959629 54965778 -187698575 - L1PA3 LINE L1 -3 6152 7 322 140 0 0 chr1 54965785 54965835 -187698518 + L1PA7 LINE L1 2173 2222 -4239 20386 109 8 5 chr1 54965835 54969624 -187694729 + L1PA7 LINE L1 2649 6464 -5 1720 172 72 11 chr1 54969624 54970188 -187694165 + L1MA9 LINE L1 5872 6460 -744 4392 135 26 9 chr1 54970193 54970928 -187693425 + L1MA9 LINE L1 6519 7265 -7 356 311 71 31 chr1 54972300 54972496 -187691857 - MIR SINE MIR -6 256 53 225 209 39 31 chr1 54973128 54973257 -187691096 + (TA)n Simple_repeat Simple_repeat 2 131 0 186 293 30 20 chr1 54973305 54973404 -187690949 + MIR SINE MIR 104 203 -59 227 345 109 9 chr1 54973597 54973707 -187690646 + MIR SINE MIR 123 243 -19 336 24 0 0 chr1 54974627 54974668 -187689685 + (CA)n Simple_repeat Simple_repeat 2 42 0 256 203 0 72 chr1 54974690 54974728 -187689625 + MIR SINE MIR 199 231 -31 4067 150 23 88 chr1 54974728 54974922 -187689431 + LTR1 LTR ERV1 1 206 -579 2524 50 27 0 chr1 54974922 54975220 -187689133 + AluY SINE Alu 1 306 -5 4067 150 23 88 chr1 54975220 54975865 -187688488 + LTR1 LTR ERV1 206 785 0 256 203 0 72 chr1 54975865 54975895 -187688458 + MIR SINE MIR 231 262 0 210 298 75 63 chr1 54976454 54976620 -187687733 - MIR SINE MIR -46 216 49 301 252 218 27 chr1 54977166 54977313 -187687040 + MER5B DNA MER1_type 1 175 -3 25 0 0 0 chr1 54977436 54977461 -187686892 + AT_rich Low_complexity Low_complexity 1 25 0 181 0 33 33 chr1 54977693 54977723 -187686630 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 5062 62 3 0 chr1 54978004 54978600 -187685753 + L1PA7 LINE L1 5554 6151 -3 1306 158 0 10 chr1 54978927 54979154 -187685199 + AluJo SINE Alu 84 308 0 22 56 0 0 chr1 54979659 54979695 -187684658 + AT_rich Low_complexity Low_complexity 1 36 0 322 219 119 33 chr1 54980315 54980466 -187683887 - L1ME4a LINE L1 -246 5875 5712 576 84 53 0 chr1 54981703 54981798 -187682555 - L1MA9 LINE L1 0 6312 6213 361 278 87 32 chr1 54982717 54982843 -187681510 - L2 LINE L2 -1 3271 3139 331 322 62 14 chr1 54983359 54983505 -187680848 + MIR SINE MIR 1 153 -109 475 238 19 0 chr1 54983570 54983675 -187680678 + MIR SINE MIR 156 262 0 1066 274 105 6 chr1 54984579 54984940 -187679413 - LTR16A LTR ERVL -28 422 26 313 344 106 54 chr1 54985207 54985538 -187678815 + L2 LINE L2 2249 2596 -718 316 270 106 10 chr1 54985871 54986068 -187678285 - HAL1b LINE L1 -158 2349 746 1480 179 44 91 chr1 54986200 54986461 -187677892 - L1MB4 LINE L1 -1 6179 5919 263 250 85 85 chr1 54986461 54986578 -187677775 - L1PA10 LINE L1 -243 5925 5806 1440 142 14 0 chr1 54986578 54986796 -187677557 - L1PA13 LINE L1 -11 6152 5932 263 250 85 85 chr1 54986796 54986902 -187677451 - L1PA10 LINE L1 -361 5807 5702 192 272 272 39 chr1 54987525 54987628 -187676725 + MIR3 SINE MIR 7 133 -75 488 260 30 112 chr1 54987867 54988136 -187676217 + L3 LINE CR1 1329 1575 -2 232 311 94 94 chr1 54988892 54989072 -187675281 - MIR3 SINE MIR -6 202 23 321 297 109 84 chr1 54989811 54990158 -187674195 - L2 LINE L2 0 3272 2917 376 299 0 9 chr1 54990396 54990503 -187673850 + MIR3 SINE MIR 83 188 -20 204 323 0 16 chr1 54990566 54990628 -187673725 - MIR3 SINE MIR -143 65 5 181 195 49 0 chr1 54990845 54990886 -187673467 + L2 LINE L2 2934 2976 -296 1288 269 76 9 chr1 54991050 54991499 -187672854 - LTR16C LTR ERVL -8 483 5 2299 149 12 9 chr1 54991931 54992273 -187672080 - MER61A LTR ERV1 0 343 1 843 300 8 28 chr1 54992274 54992527 -187671826 - MIR SINE MIR -2 260 13 322 367 86 0 chr1 54992642 54992781 -187671572 - L2 LINE L2 -568 2746 2596 579 304 26 16 chr1 54992864 54993058 -187671295 + MER91A DNA MER1_type 1 196 0 191 143 0 24 chr1 54993172 54993214 -187671139 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 260 261 14 0 chr1 54993464 54993533 -187670820 - L2 LINE L2 -237 3035 2966 243 313 218 9 chr1 54994333 54994544 -187669809 - L2 LINE L2 -4 3268 3014 270 336 17 9 chr1 54995215 54995331 -187669022 + MIR3 SINE MIR 82 198 -10 211 241 25 25 chr1 54995654 54995733 -187668620 + GA-rich Low_complexity Low_complexity 3 81 0 406 278 37 22 chr1 54996057 54996233 -187668120 + MIR SINE MIR 20 192 -70 24 32 0 0 chr1 54996462 54996493 -187667860 + AT_rich Low_complexity Low_complexity 1 31 0 419 292 26 0 chr1 54996581 54996694 -187667659 - MIR3 SINE MIR -12 196 81 44 20 0 0 chr1 54996957 54997008 -187667345 + AT_rich Low_complexity Low_complexity 1 51 0 1927 146 4 0 chr1 54997008 54997288 -187667065 - AluJb SINE Alu -26 286 6 180 0 0 0 chr1 54997875 54997895 -187666458 + (TA)n Simple_repeat Simple_repeat 1 20 0 232 217 0 0 chr1 54998050 54998110 -187666243 - L1MC4 LINE L1 -1324 6718 6659 454 73 81 0 chr1 54998125 54998261 -187666092 + (TA)n Simple_repeat Simple_repeat 1 147 0 216 0 0 0 chr1 54999195 54999219 -187665134 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 819 97 0 0 chr1 54999231 54999344 -187665009 - L1PA15 LINE L1 0 6165 6053 262 266 76 0 chr1 55000716 55000795 -187663558 - L2 LINE L2 -33 3239 3155 351 78 0 0 chr1 55001219 55001270 -187663083 + (GA)n Simple_repeat Simple_repeat 2 52 0 671 365 51 23 chr1 55001694 55002266 -187662087 - L2 LINE L2 -1021 2293 1706 1961 169 67 3 chr1 55002521 55002877 -187661476 + MLT1B LTR MaLR 1 379 -11 435 272 118 85 chr1 55002995 55003267 -187661086 + L2 LINE L2 2992 3272 0 193 236 91 18 chr1 55003827 55003882 -187660471 + MIR SINE MIR 9 67 -195 207 250 0 0 chr1 55004627 55004679 -187659674 - MIR3 SINE MIR -4 204 153 613 257 181 36 chr1 55004680 55004983 -187659370 + L2 LINE L2 2926 3272 0 207 202 191 48 chr1 55005007 55005091 -187659262 - MIR SINE MIR -78 130 35 235 266 177 16 chr1 55006899 55007023 -187657330 - MIR3 SINE MIR -60 148 5 466 241 8 85 chr1 55007407 55007578 -187656775 + MIR3 SINE MIR 29 190 -18 313 338 19 38 chr1 55007715 55007872 -187656481 + MIR3 SINE MIR 23 176 -32 312 321 171 28 chr1 55008275 55009065 -187655288 + L2 LINE L2 2369 3265 -7 2413 105 0 0 chr1 55009586 55009892 -187654461 - AluSg SINE Alu -4 306 1 272 67 67 0 chr1 55009892 55009937 -187654416 + T-rich Low_complexity Low_complexity 1 48 0 574 156 39 34 chr1 55009963 55010142 -187654211 + CT-rich Low_complexity Low_complexity 1 180 0 840 166 55 70 chr1 55010156 55010355 -187653998 - AluJb SINE Alu -2 310 115 191 153 35 47 chr1 55012051 55012136 -187652217 + (TCTCTG)n Simple_repeat Simple_repeat 2 85 0 214 241 0 0 chr1 55012163 55012217 -187652136 + CT-rich Low_complexity Low_complexity 2 55 0 454 323 98 0 chr1 55013052 55013216 -187651137 + MIR3 SINE MIR 15 194 -14 363 289 94 31 chr1 55013752 55013880 -187650473 + MIR3 SINE MIR 8 143 -65 432 302 117 11 chr1 55014203 55014382 -187649971 - MIR SINE MIR -6 256 59 702 189 88 0 chr1 55014713 55014861 -187649492 - MIR SINE MIR -69 193 33 223 303 0 0 chr1 55015054 55015120 -187649233 + MIR SINE MIR 82 147 -61 628 194 0 22 chr1 55015290 55015865 -187648488 + (CA)n Simple_repeat Simple_repeat 1 562 0 241 265 0 13 chr1 55015881 55016032 -187648321 + (CA)n Simple_repeat Simple_repeat 1 149 0 262 310 0 23 chr1 55017073 55017247 -187647106 + (TGAG)n Simple_repeat Simple_repeat 4 173 0 * 420 313 6 0 chr1 55017169 55017345 -187647008 + (TG)n Simple_repeat Simple_repeat 1 177 0 378 340 41 66 chr1 55017709 55017980 -187646373 + L2 LINE L2 2996 3259 -13 303 229 29 0 chr1 55019067 55019137 -187645216 - MIR SINE MIR -65 143 72 458 258 117 6 chr1 55019172 55019335 -187645018 - MIR SINE MIR -60 202 22 211 339 153 8 chr1 55019358 55019482 -187644871 - MIR SINE MIR -1 261 120 356 245 147 49 chr1 55019789 55019973 -187644380 + MIR3 SINE MIR 5 206 -2 225 261 0 0 chr1 55020444 55020490 -187643863 + (CA)n Simple_repeat Simple_repeat 1 46 0 188 108 0 27 chr1 55020508 55020545 -187643808 + (GGA)n Simple_repeat Simple_repeat 2 37 0 256 312 54 0 chr1 55020554 55020647 -187643706 - MIR3 SINE MIR -7 201 104 195 353 50 86 chr1 55020805 55020944 -187643409 - MIR SINE MIR -59 149 16 367 278 0 28 chr1 55021028 55021136 -187643217 + MIR SINE MIR 33 137 -71 1686 190 19 43 chr1 55022071 55022445 -187641908 + MLT1A1 LTR MaLR 1 365 0 3176 207 22 5 chr1 55023533 55024699 -187639654 + L1MB3 LINE L1 4696 5881 -302 354 115 19 0 chr1 55024851 55024903 -187639450 - MLT1B LTR MaLR -11 379 327 1336 178 41 4 chr1 55024992 55025261 -187639092 + L1MB3 LINE L1 5901 6179 -4 196 271 201 42 chr1 55027202 55027346 -187637007 + L2 LINE L2 3089 3255 -17 188 196 118 0 chr1 55028096 55028147 -187636206 - MIR SINE MIR -89 173 117 2727 88 98 5 chr1 55028151 55028561 -187635792 + LTR7 LTR ERV1 1 448 -2 16206 102 15 30 chr1 55028563 55031664 -187632689 + HERVH LTR ERV1 1 2987 -4726 824 158 20 0 chr1 55031658 55031804 -187632549 + HERVH LTR ERV1 3140 3288 -4425 * 3549 95 4 6 chr1 55031796 55032299 -187632054 + HERVH LTR ERV1 3492 3993 -3720 4386 140 1 5 chr1 55032301 55032965 -187631388 + HERVH LTR ERV1 4488 5149 -2564 1427 115 23 9 chr1 55032966 55033183 -187631170 + HERVH LTR ERV1 5600 5819 -1894 2412 85 51 16 chr1 55033185 55033560 -187630793 + HERVH LTR ERV1 7326 7713 0 2787 83 95 5 chr1 55033560 55033971 -187630382 + LTR7 LTR ERV1 1 448 -2 2272 192 48 67 chr1 55034133 55034757 -187629596 + LTR9 LTR ERV1 1 612 0 181 232 89 18 chr1 55034970 55035026 -187629327 - L2 LINE L2 0 3272 3213 * 231 156 30 57 chr1 55035016 55035107 -187629246 + MER91B DNA MER1_type 20 109 -31 1686 159 10 0 chr1 55035883 55036172 -187628181 + L1MA9 LINE L1 6021 6312 0 187 276 35 35 chr1 55036411 55036469 -187627884 + MIR SINE MIR 87 144 -64 341 296 89 41 chr1 55036598 55036767 -187627586 + MIR SINE MIR 79 255 -7 235 350 86 14 chr1 55037233 55037373 -187626980 + L2 LINE L2 3123 3272 0 944 296 194 2 chr1 55037468 55037897 -187626456 - MLT1J LTR MaLR 0 511 1 201 353 66 16 chr1 55037982 55038104 -187626249 - MIR3 SINE MIR -80 128 1 203 277 145 0 chr1 55038144 55038227 -187626126 - L2 LINE L2 -4 3268 3174 414 275 25 17 chr1 55038502 55038622 -187625731 - MIR3 SINE MIR -83 125 5 770 232 61 0 chr1 55038892 55039056 -187625297 + MER5A DNA MER1_type 16 189 0 303 279 70 51 chr1 55040151 55040311 -187624042 + MIR SINE MIR 15 185 -41 878 199 29 0 chr1 55040822 55040993 -187623360 + MER3 DNA MER1_type 1 129 -80 209 272 257 29 chr1 55041220 55041356 -187622997 - MIR3 SINE MIR 0 262 96 218 333 67 15 chr1 55041440 55041575 -187622778 - L2 LINE L2 -189 3083 2942 182 337 124 15 chr1 55041831 55042033 -187622320 + L3 LINE CR1 138 361 -1216 227 312 190 36 chr1 55042253 55042500 -187621853 + L3 LINE CR1 576 860 -717 411 297 80 70 chr1 55043094 55043394 -187620959 + L2 LINE L2 2656 2958 -356 312 238 109 10 chr1 55043458 55043541 -187620812 + L2 LINE L2 3200 3296 -17 3314 158 88 45 chr1 55043541 55044238 -187620115 + LTR8A LTR ERV1 1 727 0 312 238 109 10 chr1 55044238 55044255 -187620098 + L2 LINE L2 3296 3310 -3 2431 114 17 80 chr1 55044319 55044618 -187619735 + LTR23 LTR ERV1 4 320 -117 1795 176 0 0 chr1 55044618 55044924 -187619429 + AluJb SINE Alu 1 306 -6 2431 114 17 80 chr1 55044924 55044935 -187619418 + LTR23 LTR ERV1 320 330 -107 1865 128 0 21 chr1 55044935 55045247 -187619106 + AluSx SINE Alu 3 308 0 2431 114 17 80 chr1 55045247 55045397 -187618956 + LTR23 LTR ERV1 330 437 0 492 194 41 0 chr1 55045741 55045839 -187618514 - MER34 LTR ERV1 0 542 441 1717 136 23 45 chr1 55045840 55046149 -187618204 - AluSx SINE Alu -2 310 9 1306 162 210 104 chr1 55046243 55046625 -187617728 - LTR29 LTR ERV1 -27 595 138 917 81 0 22 chr1 55046625 55046761 -187617592 + FLAM_C SINE Alu 1 133 0 1306 162 210 104 chr1 55046761 55046916 -187617437 - LTR29 LTR ERV1 -484 138 1 1072 217 126 137 chr1 55046916 55047288 -187617065 - MER34 LTR ERV1 -212 353 1 694 249 53 6 chr1 55047890 55048059 -187616294 + MER5A DNA MER1_type 7 183 -6 22 0 0 0 chr1 55048168 55048190 -187616163 + AT_rich Low_complexity Low_complexity 1 22 0 252 161 18 0 chr1 55048366 55048422 -187615931 - L1MD3 LINE L1 -13 7982 7926 231 226 43 92 chr1 55048424 55048571 -187615782 - L1M4 LINE L1 -1835 4311 4171 5838 107 12 15 chr1 55048571 55049649 -187614704 - L1PA14 LINE L1 0 6161 5073 231 226 43 92 chr1 55049649 55049665 -187614688 - L1M4 LINE L1 -1975 4171 4156 3093 92 23 68 chr1 55049666 55050310 -187614043 - SVA Other Other -339 1047 433 5280 67 35 53 chr1 55050370 55051203 -187613150 - SVA Other Other -522 864 47 417 20 0 0 chr1 55051212 55051262 -187613091 + (GGGAGA)n Simple_repeat Simple_repeat 1 50 0 340 230 23 0 chr1 55051262 55051349 -187613004 - L1PA14 LINE L1 -1054 5092 5004 426 171 0 13 chr1 55051350 55051426 -187612927 + MER50 LTR ERV1 61 135 -599 2041 197 34 22 chr1 55051426 55051833 -187612520 + MER50 LTR ERV1 300 711 -23 10293 156 42 26 chr1 55051834 55053568 -187610785 + MER50-int LTR ERV1 1 1761 -5444 2985 157 6 10 chr1 55053605 55054084 -187610269 + MER50-int LTR ERV1 1005 1481 -3399 3341 159 22 23 chr1 55054089 55054980 -187609373 + MER50-int LTR ERV1 3384 4120 -804 * 6531 159 6 7 chr1 55054970 55055986 -187608367 + MER50-int LTR ERV1 6183 7197 -8 3579 171 24 19 chr1 55055986 55056624 -187607729 + MER50 LTR ERV1 1 641 -93 2165 272 46 19 chr1 55056629 55057538 -187606815 - L1M4 LINE L1 -2093 4053 3120 187 265 20 0 chr1 55057569 55057618 -187606735 + L2 LINE L2 3264 3313 0 3155 210 113 8 chr1 55058069 55059169 -187605184 - L1ME2 LINE L1 0 6164 4948 414 125 0 38 chr1 55059169 55059249 -187605104 + L1PA15 LINE L1 6089 6165 0 726 240 99 5 chr1 55059287 55059479 -187604874 - MER2 DNA MER2_type -135 210 1 432 271 15 21 chr1 55059520 55059850 -187604503 + (TA)n Simple_repeat Simple_repeat 1 328 0 497 305 49 35 chr1 55060788 55060917 -187603436 - ERVL LTR ERVL -1132 4632 4506 3001 167 25 11 chr1 55060917 55061437 -187602916 + MER1A DNA MER1_type 1 527 0 497 305 49 35 chr1 55061437 55061592 -187602761 - ERVL LTR ERVL -1258 4506 4344 286 340 99 26 chr1 55062003 55062194 -187602159 - LTR33 LTR ERVL -3 518 314 586 304 44 18 chr1 55062371 55062598 -187601755 - MIR SINE MIR -27 235 3 332 261 11 0 chr1 55063551 55063639 -187600714 + MER53 DNA DNA 101 189 0 413 296 59 9 chr1 55064381 55064601 -187599752 - L1ME LINE L1 -418 5752 5522 1160 139 23 64 chr1 55064982 55065248 -187599105 - L1MC2 LINE L1 -1 6343 6089 1671 212 52 39 chr1 55065248 55065781 -187598572 + LTR55 LTR ERV 1 540 -8 3203 192 96 3 chr1 55065786 55066665 -187597688 - L1MC2 LINE L1 -250 6094 5140 23 0 0 0 chr1 55067112 55067135 -187597218 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 55067584 55067613 -187596740 + AT_rich Low_complexity Low_complexity 1 29 0 2195 84 3 64 chr1 55067643 55067845 -187596508 - LTR8 LTR ERV1 -345 346 174 5260 92 16 16 chr1 55067845 55068617 -187595736 - SVA Other Other 0 1386 615 2195 84 3 64 chr1 55068617 55068772 -187595581 - LTR8 LTR ERV1 -517 174 11 236 275 8 25 chr1 55069053 55069173 -187595180 + L1MEd LINE L1 1126 1243 -4876 4007 114 27 57 chr1 55069304 55075526 -187588827 + L1PA7 LINE L1 12 6146 -8 1856 113 23 15 chr1 55075656 55075922 -187588431 - AluSx SINE Alu -4 308 41 411 68 0 0 chr1 55076023 55076082 -187588271 + (TG)n Simple_repeat Simple_repeat 1 59 0 1003 205 19 0 chr1 55077228 55077433 -187586920 - MER3 DNA MER1_type 0 209 1 225 353 86 9 chr1 55077695 55077811 -187586542 + L2 LINE L2 3189 3313 0 1925 291 79 52 chr1 55078419 55078612 -187585741 + L2 LINE L2 2001 2187 -1126 1775 95 22 25 chr1 55078612 55078662 -187585691 - L1PA13 LINE L1 -2 6161 6112 207 0 0 0 chr1 55078662 55078685 -187585668 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1775 95 22 25 chr1 55078685 55078908 -187585445 - L1PA13 LINE L1 -51 6112 5889 1925 291 79 52 chr1 55078908 55079983 -187584370 + L2 LINE L2 2187 3307 -6 1448 212 10 29 chr1 55080514 55080820 -187583533 + AluJb SINE Alu 1 300 -12 253 314 151 16 chr1 55082190 55082375 -187581978 - L3 LINE CR1 -203 1374 1165 405 357 28 8 chr1 55082494 55082743 -187581610 - MIR SINE MIR -8 254 1 370 337 199 0 chr1 55084299 55084480 -187579873 - MIR SINE MIR -1 261 45 3183 198 18 3 chr1 55084686 55085358 -187578995 - L1MB3 LINE L1 -9 6174 5493 252 214 28 22 chr1 55085362 55085540 -187578813 + (TA)n Simple_repeat Simple_repeat 2 180 0 2168 224 38 13 chr1 55085550 55086311 -187578042 - L1MB3 LINE L1 -703 5477 4695 2202 171 73 0 chr1 55086332 55086811 -187577542 - L1MA4A LINE L1 -21 6282 5769 41008 32 21 1 chr1 55086815 55092847 -187571506 - L1PA2 LINE L1 0 6155 1 1892 149 72 0 chr1 55092849 55093121 -187571232 - L1MA4A LINE L1 -524 5779 5473 198 0 0 0 chr1 55093121 55093143 -187571210 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1892 149 72 0 chr1 55093143 55093232 -187571121 - L1MA4A LINE L1 -830 5473 5392 3288 216 31 12 chr1 55093245 55094086 -187570267 + L1 LINE L1 4495 5351 -795 10572 189 32 17 chr1 55094102 55097303 -187567050 - L1PA14 LINE L1 -7 7592 4376 5301 234 20 8 chr1 55097304 55099024 -187565329 - L1PA14 LINE L1 -3261 4323 2590 682 102 0 0 chr1 55099056 55099164 -187565189 - AluY SINE Alu 0 311 204 2289 102 28 3 chr1 55099164 55099527 -187564826 - L1PA14 LINE L1 -5022 2559 2188 1895 238 44 0 chr1 55099525 55099958 -187564395 - L1M4c LINE L1 -5915 469 18 * 248 305 79 79 chr1 55099964 55100141 -187564212 + L2 LINE L2 2660 2836 -478 462 192 87 0 chr1 55100178 55100282 -187564071 - MER57A LTR ERV1 -4 399 287 820 158 15 79 chr1 55100282 55100484 -187563869 - MER51A LTR ERV1 0 634 446 346 256 12 12 chr1 55100615 55100701 -187563652 - MER51A LTR ERV1 -539 95 10 1399 191 30 0 chr1 55100708 55100975 -187563378 - MER51A-int LTR ERV1 0 7816 7542 504 266 0 0 chr1 55101086 55101221 -187563132 - MER51A-int LTR ERV1 -334 7978 7264 382 325 20 10 chr1 55101224 55101421 -187562932 + HERV15 LTR ERV1 4122 4320 -4415 11404 148 58 47 chr1 55101708 55104335 -187560018 - MER51-int LTR ERV1 -5051 3069 455 660 232 18 50 chr1 55104419 55104639 -187559714 - MER51-int LTR ERV1 -6927 889 677 367 187 23 0 chr1 55104991 55105078 -187559275 - MER51-int LTR ERV1 -4366 526 423 4001 151 19 13 chr1 55105080 55105761 -187558592 + L1PB4 LINE L1 188 872 -5274 227 32 32 0 chr1 55105766 55105797 -187558556 + L1PA7 LINE L1 1131 1162 -5299 23991 82 6 1 chr1 55105810 55110095 -187554258 + L1PA7 LINE L1 2165 6465 -4 2286 71 7 3 chr1 55110113 55110409 -187553944 + AluY SINE Alu 1 297 -14 4236 177 32 15 chr1 55110420 55111252 -187553101 + L1PB4 LINE L1 4642 5506 -650 1879 126 4 4 chr1 55111252 55111522 -187552831 + AluSx SINE Alu 34 303 -9 4236 177 32 15 chr1 55111522 55112183 -187552170 + L1PB4 LINE L1 5506 6154 -2 1479 346 55 25 chr1 55112243 55113343 -187551010 + ERVL LTR ERVL 3891 5024 -740 470 333 53 41 chr1 55113371 55113689 -187550664 + ERVL LTR ERVL 5085 5406 -358 1776 172 36 39 chr1 55114623 55114984 -187549369 - L1MA9 LINE L1 0 6312 5953 3966 192 29 7 chr1 55115178 55116808 -187547545 - L1MA9 LINE L1 -363 5949 4104 * 4118 148 13 0 chr1 55116804 55117441 -187546912 - L1PA16 LINE L1 -46 6120 5476 334 307 26 0 chr1 55117441 55117555 -187546798 - L1MC3 LINE L1 -1242 6543 6427 2030 128 10 0 chr1 55117563 55117853 -187546500 - AluSx SINE Alu -19 293 1 1471 141 36 0 chr1 55117854 55118232 -187546121 - L1P4 LINE L1 -675 5490 5104 1179 221 66 0 chr1 55118249 55118521 -187545832 + L1P LINE L1 4851 5140 -1006 189 310 78 43 chr1 55118787 55118903 -187545450 - MIR SINE MIR 0 262 143 227 391 14 14 chr1 55119098 55119220 -187545133 - L2 LINE L2 -2845 469 345 2292 198 12 14 chr1 55119220 55119635 -187544718 - MLT2D LTR ERVL 0 414 1 227 391 14 14 chr1 55119635 55119650 -187544703 - L2 LINE L2 -2968 346 332 230 250 97 28 chr1 55120838 55120910 -187543443 + MIR SINE MIR 26 102 -160 21 0 0 0 chr1 55122008 55122029 -187542324 + AT_rich Low_complexity Low_complexity 1 21 0 13481 26 0 2 chr1 55122560 55124837 -187539516 + L1PA4 LINE L1 3881 6155 0 10475 132 49 6 chr1 55124837 55126504 -187537849 - L1M1 LINE L1 -4237 3328 1591 1452 120 42 0 chr1 55126509 55126726 -187537627 - MER61E LTR ERV1 -3 566 341 277 211 0 84 chr1 55126862 55126933 -187537420 - MER61E LTR ERV1 -406 163 99 * 406 252 28 59 chr1 55126915 55127171 -187537182 - LTR25 LTR ERV1 -397 172 1 3465 191 60 10 chr1 55127171 55127850 -187536503 - L1M1 LINE L1 -5971 1594 882 641 228 31 0 chr1 55127847 55127974 -187536379 - L1M1 LINE L1 -7216 349 219 * 3492 171 30 11 chr1 55127945 55128576 -187535777 - L1M1 LINE L1 -6904 661 19 1443 203 0 29 chr1 55128612 55128893 -187535460 + AluJo SINE Alu 8 280 -32 215 0 67 0 chr1 55128898 55128928 -187535425 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 5089 161 34 10 chr1 55128929 55130154 -187534199 + L1MB1 LINE L1 4912 6168 0 2627 211 78 21 chr1 55130150 55131025 -187533328 + L1ME1 LINE L1 5016 5937 -229 * 363 215 64 47 chr1 55131018 55131190 -187533163 - L1MEd LINE L1 -4921 1198 1024 * 817 163 17 47 chr1 55131321 55131493 -187532860 - MLT1B LTR MaLR -7 383 217 210 71 0 0 chr1 55131975 55132003 -187532350 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 619 320 97 19 chr1 55132246 55132555 -187531798 + L2 LINE L2 2976 3308 -5 376 259 36 71 chr1 55133916 55134093 -187530260 + MIR SINE MIR 17 186 -65 1863 139 10 48 chr1 55134103 55134412 -187529941 - AluSq SINE Alu -16 297 1 190 213 43 21 chr1 55134524 55134571 -187529782 + MIR SINE MIR 157 204 -58 2002 154 3 0 chr1 55134636 55134934 -187529419 + AluSx SINE Alu 1 299 -13 2027 151 49 22 chr1 55135068 55135433 -187528920 + THE1C LTR MaLR 1 375 0 1991 141 3 0 chr1 55135541 55135844 -187528509 + AluSx SINE Alu 1 304 0 189 179 26 0 chr1 55136093 55136132 -187528221 + MIR SINE MIR 223 262 0 22 70 0 0 chr1 55136945 55136988 -187527365 + AT_rich Low_complexity Low_complexity 1 43 0 690 237 35 12 chr1 55137042 55137211 -187527142 + MER5B DNA MER1_type 4 176 -2 199 286 0 0 chr1 55137427 55137476 -187526877 - L2 LINE L2 0 3313 3265 212 214 71 0 chr1 55138435 55138491 -187525862 - L3 LINE CR1 -309 1268 1209 416 225 0 11 chr1 55139148 55139330 -187525023 + (CA)n Simple_repeat Simple_repeat 1 180 0 367 214 6 6 chr1 55139345 55139518 -187524835 + (CA)n Simple_repeat Simple_repeat 2 174 0 317 169 145 24 chr1 55139555 55139638 -187524715 + L2 LINE L2 3171 3263 -9 226 254 17 17 chr1 55140026 55140085 -187524268 - MIR SINE MIR -195 67 9 667 264 48 14 chr1 55140297 55140505 -187523848 + MIR SINE MIR 1 215 -47 438 192 7 157 chr1 55140484 55140600 -187523753 - MIR SINE MIR -61 201 121 * 2015 148 3 0 chr1 55140600 55140903 -187523450 + AluSx SINE Alu 3 306 -6 438 192 7 157 chr1 55140903 55140988 -187523365 - MIR SINE MIR -141 121 25 209 279 96 58 chr1 55141665 55141769 -187522584 - MER5A DNA MER1_type -24 165 58 336 302 55 55 chr1 55141872 55142084 -187522269 + MIR SINE MIR 5 216 -46 312 306 45 60 chr1 55142189 55142323 -187522030 + L2 LINE L2 3132 3263 -9 204 67 0 0 chr1 55142533 55142563 -187521790 + (T)n Simple_repeat Simple_repeat 1 30 0 248 313 0 0 chr1 55142566 55142630 -187521723 - MIR SINE MIR -67 141 78 5399 37 0 0 chr1 55142635 55143232 -187521121 + L1PA5 LINE L1 5554 6150 -4 629 296 132 62 chr1 55144325 55144511 -187519842 - L2 LINE L2 -274 2998 2826 2411 182 32 22 chr1 55144511 55144973 -187519380 - MLT1C LTR MaLR 0 467 1 629 296 132 62 chr1 55144973 55145661 -187518692 - L2 LINE L2 -446 2826 2063 187 245 61 102 chr1 55145824 55145922 -187518431 + L2 LINE L2 3176 3269 -3 316 325 97 7 chr1 55146149 55146303 -187518050 + MIR3 SINE MIR 19 186 -22 203 259 52 0 chr1 55146419 55146477 -187517876 - MIR SINE MIR -113 149 89 2836 22 0 0 chr1 55146597 55146921 -187517432 - L1PA3 LINE L1 -1460 4686 4363 8133 25 3 0 chr1 55146921 55148391 -187515962 + L1PA3 LINE L1 4680 6152 -3 207 0 0 0 chr1 55148394 55148417 -187515936 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 205 211 0 0 chr1 55148733 55148771 -187515582 + L3 LINE CR1 1533 1570 -7 400 311 18 24 chr1 55148872 55149039 -187515314 + MER5A DNA MER1_type 1 166 -23 252 0 0 0 chr1 55149323 55149351 -187515002 + (A)n Simple_repeat Simple_repeat 1 28 0 443 306 19 13 chr1 55149579 55149736 -187514617 - MIR SINE MIR -28 234 77 361 280 37 9 chr1 55150020 55150127 -187514226 + MIR SINE MIR 114 223 -39 1314 128 19 14 chr1 55150450 55150661 -187513692 + AluSg/x SINE Alu 97 308 -4 3271 260 68 16 chr1 55151302 55152695 -187511658 + L1ME1 LINE L1 35 3516 -2699 286 42 42 0 chr1 55152717 55152765 -187511588 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 454 304 34 94 chr1 55152769 55153206 -187511147 - L2 LINE L2 -7 3265 2855 6476 207 53 51 chr1 55153619 55154016 -187510337 + L1ME1 LINE L1 3538 3932 -2471 536 130 74 19 chr1 55154016 55154124 -187510229 + L1MB2 LINE L1 6054 6167 -4 6476 207 53 51 chr1 55154124 55156431 -187507922 + L1ME1 LINE L1 3932 6402 -1 1270 166 18 14 chr1 55157496 55157719 -187506634 - MER30 DNA MER1_type 0 230 7 264 305 51 42 chr1 55158263 55158381 -187505972 - MIR3 SINE MIR -84 124 6 1235 257 87 14 chr1 55158787 55159031 -187505322 + MLT1J2 LTR MaLR 1 281 -169 1333 177 23 5 chr1 55159031 55159246 -187505107 - MER20 DNA MER1_type 0 219 1 1235 257 87 14 chr1 55159246 55159359 -187504994 + MLT1J2 LTR MaLR 281 384 -66 1740 171 9 19 chr1 55159359 55159674 -187504679 + AluJb SINE Alu 1 312 0 243 356 9 39 chr1 55160503 55160654 -187503699 + MIR3 SINE MIR 4 152 -77 1717 127 87 0 chr1 55161032 55161307 -187503046 - AluJo SINE Alu 0 312 14 184 327 201 20 chr1 55162879 55163133 -187501220 + L2 LINE L2 2934 3233 -39 443 166 28 124 chr1 55163322 55163467 -187500886 + MIR SINE MIR 111 241 -21 216 219 0 0 chr1 55163436 55163477 -187500876 + L2 LINE L2 3256 3296 -17 * 230 145 32 0 chr1 55163791 55163816 -187500537 + (TCTG)n Simple_repeat Simple_repeat 2 65 0 213 108 0 0 chr1 55163816 55163853 -187500500 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 394 335 91 28 chr1 55163953 55164129 -187500224 + MIR3 SINE MIR 1 187 -21 544 261 39 28 chr1 55164208 55164388 -187499965 - L2 LINE L2 0 3313 3132 340 341 55 20 chr1 55164391 55164622 -187499731 - MIR SINE MIR -6 256 15 188 291 139 0 chr1 55165403 55165482 -187498871 - L2 LINE L2 -4 3268 3179 297 290 65 0 chr1 55165940 55166033 -187498320 + MIR SINE MIR 76 174 -88 22 0 0 0 chr1 55166894 55166916 -187497437 + AT_rich Low_complexity Low_complexity 1 22 0 1244 195 102 47 chr1 55167115 55167459 -187496894 + MLT1A1 LTR MaLR 1 363 -2 816 261 115 0 chr1 55168104 55168338 -187496015 - MIR SINE MIR -1 261 1 430 281 19 70 chr1 55168941 55169162 -187495191 + MIR SINE MIR 6 215 -22 269 263 125 0 chr1 55169487 55169567 -187494786 - L2 LINE L2 0 3272 3183 226 329 102 60 chr1 55169808 55169834 -187494519 - MIR3 SINE MIR -14 194 171 1277 186 69 106 chr1 55169834 55170211 -187494142 - MLT1A1 LTR MaLR 0 365 3 226 329 102 60 chr1 55170211 55170351 -187494002 - MIR3 SINE MIR -37 171 21 2331 71 0 39 chr1 55170652 55170961 -187493392 + AluY SINE Alu 1 297 -14 394 265 80 13 chr1 55171107 55171258 -187493095 - MIR SINE MIR -55 207 47 472 311 169 14 chr1 55171283 55171502 -187492851 - MIR SINE MIR -1 261 9 280 320 41 10 chr1 55174160 55174257 -187490096 - L2 LINE L2 -5 3308 3209 509 262 53 59 chr1 55174675 55174869 -187489484 - MIR SINE MIR -57 151 4 237 299 79 39 chr1 55175072 55175199 -187489154 - L2 LINE L2 -213 3059 2928 185 293 73 0 chr1 55175470 55175552 -187488801 - MIR SINE MIR -50 212 125 238 333 14 0 chr1 55175667 55175739 -187488614 + L3 LINE CR1 1502 1574 -3 357 233 117 46 chr1 55176158 55176324 -187488029 - MIR SINE MIR -62 146 20 329 250 173 0 chr1 55176463 55176567 -187487786 - L2 LINE L2 -9 3263 3142 240 164 41 96 chr1 55177290 55177363 -187486990 - L2 LINE L2 -5 3308 3240 276 349 62 62 chr1 55177745 55178017 -187486336 + L2 LINE L2 2997 3268 -4 1086 122 0 0 chr1 55178020 55178200 -187486153 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 328 354 31 8 chr1 55178278 55178405 -187485948 + MIR3 SINE MIR 15 144 -64 541 285 78 6 chr1 55179753 55179932 -187484421 - MIR SINE MIR -50 212 21 334 376 8 8 chr1 55180693 55180818 -187483535 + MIR SINE MIR 22 146 -62 371 234 131 15 chr1 55182025 55182162 -187482191 - MIR SINE MIR -6 256 104 303 253 77 22 chr1 55182174 55182265 -187482088 - MIR3 SINE MIR -54 154 59 352 220 0 110 chr1 55182427 55182545 -187481808 + MIR SINE MIR 18 122 -86 200 108 0 27 chr1 55182630 55182667 -187481686 + (TTA)n Simple_repeat Simple_repeat 3 38 0 329 297 7 134 chr1 55183279 55183555 -187480798 - L2 LINE L2 -86 3186 2946 690 277 68 34 chr1 55185013 55185248 -187479105 + MIR SINE MIR 7 249 -13 310 332 94 42 chr1 55185362 55185459 -187478894 + L2 LINE L2 2578 2668 -646 1731 203 0 7 chr1 55185459 55185760 -187478593 - AluJo SINE Alu -13 299 1 310 332 94 42 chr1 55185760 55185927 -187478426 + L2 LINE L2 2668 2856 -458 187 200 57 29 chr1 55186252 55186322 -187478031 - L2 LINE L2 -75 3238 3167 * 553 266 29 90 chr1 55186310 55186424 -187477929 - MIR SINE MIR 0 262 169 695 204 8 0 chr1 55186424 55186556 -187477797 + MER94 DNA DNA 1 133 -1 553 266 29 90 chr1 55186556 55186685 -187477668 - MIR SINE MIR -93 169 34 207 282 121 40 chr1 55188224 55188348 -187476005 + L2 LINE L2 3119 3252 -20 617 291 23 6 chr1 55188442 55188617 -187475736 - MER91A DNA MER1_type -8 188 11 206 294 0 0 chr1 55189005 55189056 -187475297 + (CA)n Simple_repeat Simple_repeat 1 51 0 347 290 160 29 chr1 55189280 55189518 -187474835 + L3 LINE CR1 1215 1483 -94 802 217 117 26 chr1 55189757 55189987 -187474366 - MIR SINE MIR -10 252 2 357 62 0 0 chr1 55190544 55190592 -187473761 + (TG)n Simple_repeat Simple_repeat 2 49 0 319 330 84 29 chr1 55191320 55191493 -187472860 - L2 LINE L2 -5 3267 3076 755 193 112 6 chr1 55191493 55191654 -187472699 - MER45A DNA AcHobo 0 178 1 319 330 84 29 chr1 55191654 55191719 -187472634 - L2 LINE L2 -196 3076 3016 330 337 53 76 chr1 55191758 55192061 -187472292 + L2 LINE L2 2977 3272 0 296 260 23 107 chr1 55192228 55192405 -187471948 - L2 LINE L2 -609 2705 2544 182 273 0 0 chr1 55192878 55192922 -187471431 + MIR3 SINE MIR 158 201 -7 506 217 217 29 chr1 55193254 55193429 -187470924 - MIR SINE MIR -21 241 34 351 256 110 78 chr1 55193465 55193680 -187470673 - MIR SINE MIR -21 241 16 328 299 114 6 chr1 55194175 55194342 -187470011 + MIR SINE MIR 50 234 -28 232 390 6 37 chr1 55194639 55194803 -187469550 + L2 LINE L2 3002 3160 -112 21 0 0 0 chr1 55194843 55194864 -187469489 + AT_rich Low_complexity Low_complexity 1 21 0 365 253 11 132 chr1 55194874 55195048 -187469305 - MIR3 SINE MIR -2 206 54 346 278 118 94 chr1 55195110 55195584 -187468769 + L2 LINE L2 2735 3222 -50 248 295 145 18 chr1 55196061 55196227 -187468126 - L2 LINE L2 -232 3040 2854 212 226 32 0 chr1 55196322 55196384 -187467969 - L2 LINE L2 -85 3228 3165 241 218 35 0 chr1 55196504 55196591 -187467762 + CT-rich Low_complexity Low_complexity 1 90 0 250 355 51 90 chr1 55196591 55196819 -187467534 - L2 LINE L2 0 3272 3037 6176 28 0 0 chr1 55196819 55197531 -187466822 + L1PA4 LINE L1 5444 6155 0 250 355 51 90 chr1 55197531 55197699 -187466654 - L2 LINE L2 -235 3037 2894 2070 123 40 3 chr1 55197699 55198000 -187466353 + AluSx SINE Alu 1 312 0 250 355 51 90 chr1 55198000 55198069 -187466284 - L2 LINE L2 -378 2894 2824 751 203 21 16 chr1 55198076 55198263 -187466090 - MLT2F LTR ERVL -7 656 469 810 283 127 9 chr1 55198297 55198636 -187465717 - MLT2F LTR ERVL -284 379 1 223 331 25 50 chr1 55199242 55199363 -187464990 - MIR SINE MIR -71 137 20 372 239 128 9 chr1 55199421 55199530 -187464823 - L3 LINE CR1 -112 1465 1344 295 268 103 21 chr1 55200047 55200144 -187464209 - L2 LINE L2 0 3313 3209 670 252 8 33 chr1 55200666 55200861 -187463492 - MIR SINE MIR -62 146 3 361 309 106 64 chr1 55201753 55201941 -187462412 - L2 LINE L2 -9 3263 3068 249 243 48 0 chr1 55202018 55202101 -187462252 + MIR SINE MIR 101 185 -61 237 272 128 24 chr1 55202108 55202233 -187462120 + L2 LINE L2 3090 3227 -45 243 361 77 0 chr1 55202325 55202455 -187461898 - MIR SINE MIR -6 256 117 682 214 14 0 chr1 55204020 55204165 -187460188 + MIR SINE MIR 116 262 0 340 328 74 15 chr1 55204628 55204785 -187459568 + MIR SINE MIR 38 210 -52 1064 129 6 0 chr1 55204899 55205062 -187459291 - L1PA10 LINE L1 0 6168 6005 237 252 158 93 chr1 55206014 55206153 -187458200 - L2 LINE L2 0 3272 3125 422 269 34 94 chr1 55206209 55206443 -187457910 - L3 LINE CR1 -61 1516 1297 196 275 159 0 chr1 55207453 55207522 -187456831 + L2 LINE L2 3189 3268 -4 346 287 66 59 chr1 55207616 55207752 -187456601 + MIR3 SINE MIR 37 173 -35 373 316 33 20 chr1 55208363 55208515 -187455838 - MIR3 SINE MIR -11 197 44 785 251 38 5 chr1 55208603 55208821 -187455532 - MIR SINE MIR -5 257 36 278 280 53 0 chr1 55209024 55209099 -187455254 + MER91C DNA MER1_type 32 110 -30 183 222 0 0 chr1 55209780 55209816 -187454537 + L2 LINE L2 3011 3046 -226 264 167 0 0 chr1 55209980 55210028 -187454325 + (TG)n Simple_repeat Simple_repeat 2 49 0 392 328 164 5 chr1 55210070 55210259 -187454094 + MIR SINE MIR 8 226 -36 2524 58 7 0 chr1 55210432 55210723 -187453630 + AluY SINE Alu 1 293 -18 2910 164 48 5 chr1 55210725 55210787 -187453566 - L1MB4 LINE L1 -3 6163 6105 1781 155 24 20 chr1 55210787 55211084 -187453269 + AluJo SINE Alu 1 298 -14 2910 164 48 5 chr1 55211084 55211625 -187452728 - L1MB4 LINE L1 -61 6105 5530 344 292 189 41 chr1 55211720 55212086 -187452267 + L3 LINE CR1 1121 1540 -37 715 266 157 40 chr1 55212774 55213202 -187451151 - L2 LINE L2 0 3313 2836 736 151 0 17 chr1 55213272 55213391 -187450962 - FRAM SINE Alu -2 174 58 793 236 25 66 chr1 55213396 55213594 -187450759 - L2 LINE L2 -570 2744 2556 2137 102 28 3 chr1 55213594 55213878 -187450475 + AluSg SINE Alu 1 291 -19 793 236 25 66 chr1 55213878 55213921 -187450432 - L2 LINE L2 -758 2556 2513 224 278 175 32 chr1 55214938 55215064 -187449289 + MIR SINE MIR 113 256 -6 382 331 56 0 chr1 55215728 55215870 -187448483 - MIR SINE MIR -11 251 102 263 242 32 40 chr1 55216005 55216129 -187448224 - MER103 DNA DNA -19 147 25 256 342 136 20 chr1 55216901 55217100 -187447253 + L3 LINE CR1 979 1200 -377 848 193 32 27 chr1 55217184 55217371 -187446982 + MER5A DNA MER1_type 2 189 0 213 344 70 16 chr1 55217382 55217510 -187446843 - MIR SINE MIR -80 182 48 21 0 0 0 chr1 55219121 55219142 -187445211 + AT_rich Low_complexity Low_complexity 1 21 0 232 215 127 38 chr1 55219143 55219222 -187445131 + L2 LINE L2 3187 3272 0 228 323 105 0 chr1 55219338 55219462 -187444891 + L2 LINE L2 3136 3272 0 338 257 54 86 chr1 55220124 55220346 -187444007 - MIR SINE MIR -19 243 29 469 259 252 19 chr1 55220839 55221132 -187443221 + L2 LINE L2 2800 3149 -164 583 274 23 34 chr1 55221139 55221314 -187443039 + MER5A DNA MER1_type 12 184 -5 283 326 62 118 chr1 55221372 55221507 -187442846 + L2 LINE L2 2818 2959 -313 2734 51 3 0 chr1 55221507 55221838 -187442515 - L1PA5 LINE L1 -3 6151 5820 283 326 62 118 chr1 55221838 55222184 -187442169 + L2 LINE L2 2959 3272 0 220 287 138 11 chr1 55222653 55222740 -187441613 - MIR3 SINE MIR -28 180 83 420 283 33 57 chr1 55223160 55223331 -187441022 + MIR3 SINE MIR 1 166 -59 345 303 141 14 chr1 55223369 55223511 -187440842 + MIR SINE MIR 103 262 0 267 354 10 10 chr1 55224076 55224175 -187440178 + MIR SINE MIR 26 124 -84 198 103 0 0 chr1 55224334 55224363 -187439990 + (A)n Simple_repeat Simple_repeat 1 29 0 305 247 39 13 chr1 55225392 55225469 -187438884 - MIR SINE MIR -68 194 116 191 343 126 30 chr1 55225699 55225897 -187438456 + L2 LINE L2 2075 2291 -1023 233 250 62 0 chr1 55226049 55226113 -187438240 - MIR3 SINE MIR -31 177 110 445 312 36 7 chr1 55226270 55226408 -187437945 + L2 LINE L2 3117 3258 -14 1579 295 62 78 chr1 55226450 55226962 -187437391 + L1ME LINE L1 4340 4859 -1311 818 266 181 44 chr1 55226962 55227420 -187436933 + LTR33 LTR ERVL 1 521 0 1579 295 62 78 chr1 55227420 55228235 -187436118 + L1ME LINE L1 4859 5658 -512 248 227 0 30 chr1 55228547 55228613 -187435740 + GA-rich Low_complexity Low_complexity 1 64 0 293 315 11 0 chr1 55228675 55228767 -187435586 + GA-rich Low_complexity Low_complexity 3 95 0 3436 235 78 9 chr1 55228825 55230009 -187434344 + L1MDa LINE L1 2474 3714 -2826 987 247 72 13 chr1 55230038 55230414 -187433939 + L1MDa LINE L1 4680 5077 -1463 2132 160 46 3 chr1 55230418 55230598 -187433755 - MSTB LTR MaLR -21 405 234 195 42 0 0 chr1 55230598 55230622 -187433731 + (GA)n Simple_repeat Simple_repeat 2 25 0 2132 160 46 3 chr1 55230622 55230829 -187433524 - MSTB LTR MaLR -192 234 1 784 227 60 2 chr1 55230834 55231069 -187433284 + L1MDa LINE L1 5092 5348 -1192 246 203 14 43 chr1 55231557 55231695 -187432658 + GA-rich Low_complexity Low_complexity 2 135 0 1550 215 25 12 chr1 55231724 55232172 -187432181 + L1MDa LINE L1 5354 5813 -747 1780 157 9 49 chr1 55232172 55232497 -187431856 + AluJo SINE Alu 1 312 0 1550 215 25 12 chr1 55232497 55232617 -187431736 + L1MDa LINE L1 5813 5930 -630 1673 169 16 41 chr1 55232955 55233275 -187431078 - AluJo SINE Alu 0 312 1 249 250 0 0 chr1 55233516 55233572 -187430781 + MIR SINE MIR 73 129 -79 607 322 99 17 chr1 55233667 55234021 -187430332 + L3 LINE CR1 1139 1521 -56 483 261 146 18 chr1 55234259 55234424 -187429929 - MER91A DNA MER1_type -10 186 1 428 286 0 18 chr1 55234614 55234726 -187429627 - MIR SINE MIR -50 212 103 240 326 33 22 chr1 55234747 55234839 -187429514 + L3 LINE CR1 1429 1521 -56 1963 167 6 6 chr1 55234890 55235202 -187429151 - AluJb SINE Alu 0 312 1 2164 279 164 38 chr1 55235843 55235982 -187428371 + L2 LINE L2 1390 1510 -1804 2267 103 0 29 chr1 55235982 55236293 -187428060 + AluSc SINE Alu 1 302 -7 2164 279 164 38 chr1 55236293 55237460 -187426893 + L2 LINE L2 1510 2862 -452 677 172 0 0 chr1 55237462 55237578 -187426775 + AluSg/x SINE Alu 189 304 -8 347 289 19 19 chr1 55237580 55237739 -187426614 + L2 LINE L2 2852 3010 -262 333 243 166 18 chr1 55237746 55237915 -187426438 + L2 LINE L2 3120 3313 0 752 241 51 10 chr1 55238031 55238226 -187426127 + MIR SINE MIR 60 262 0 809 168 139 0 chr1 55238252 55238425 -187425928 - MER20 DNA MER1_type 0 219 23 465 300 30 14 chr1 55238430 55238606 -187425747 - MIR SINE MIR -62 146 3 311 0 26 0 chr1 55238992 55239031 -187425322 + (TG)n Simple_repeat Simple_repeat 2 41 0 367 313 36 0 chr1 55239125 55239237 -187425116 + MIR SINE MIR 61 176 -86 341 201 13 94 chr1 55239644 55239692 -187424661 - L1MA9 LINE L1 0 6312 6262 2412 78 3 3 chr1 55239692 55239988 -187424365 + AluSq SINE Alu 1 296 -17 341 201 13 94 chr1 55239988 55240088 -187424265 - L1MA9 LINE L1 -50 6262 6176 332 113 48 0 chr1 55240089 55240151 -187424202 - L1MA9 LINE L1 -234 6078 6014 1072 153 0 5 chr1 55240158 55240347 -187424006 + L1M2 LINE L1 5531 5718 -594 353 305 88 67 chr1 55240667 55240995 -187423358 + L2 LINE L2 2831 3165 -107 2222 117 3 3 chr1 55241194 55241502 -187422851 - AluSg SINE Alu -2 308 1 258 316 17 109 chr1 55242188 55242362 -187421991 - MIR3 SINE MIR -31 177 20 1880 178 40 58 chr1 55242471 55243068 -187421285 - L1MB8 LINE L1 -3 6177 5630 364 206 0 0 chr1 55243726 55243794 -187420559 + MER116 DNA Mariner 2 69 -11 219 286 11 33 chr1 55243968 55244059 -187420294 + MIR3 SINE MIR 3 91 -117 238 284 107 95 chr1 55244211 55244538 -187419815 + L2 LINE L2 2835 3165 -107 230 208 38 0 chr1 55245199 55245252 -187419101 + G-rich Low_complexity Low_complexity 3 57 0 200 100 25 0 chr1 55245323 55245363 -187418990 + (CGAG)n Simple_repeat Simple_repeat 2 42 0 212 75 0 25 chr1 55245428 55245468 -187418885 + (CCCGG)n Simple_repeat Simple_repeat 3 41 0 21 0 0 0 chr1 55245470 55245491 -187418862 + GC_rich Low_complexity Low_complexity 1 21 0 648 292 98 17 chr1 55245803 55246039 -187418314 + MIR SINE MIR 8 262 0 265 278 104 17 chr1 55246119 55246234 -187418119 - L2 LINE L2 -218 3054 2930 26 0 0 0 chr1 55247137 55247163 -187417190 + GC_rich Low_complexity Low_complexity 1 26 0 330 87 0 0 chr1 55248937 55248983 -187415370 + (CA)n Simple_repeat Simple_repeat 2 47 0 810 262 30 21 chr1 55249525 55249758 -187414595 - MIR SINE MIR -14 248 14 610 280 0 32 chr1 55253002 55253159 -187411194 + MIR3 SINE MIR 51 202 -6 372 249 195 38 chr1 55253166 55253361 -187410992 - MIR SINE MIR -29 233 5 576 0 0 0 chr1 55253641 55253705 -187410648 + (TA)n Simple_repeat Simple_repeat 1 64 0 360 385 54 14 chr1 55254412 55254633 -187409720 - MIR SINE MIR -12 250 21 336 24 0 0 chr1 55254685 55254726 -187409627 + (TG)n Simple_repeat Simple_repeat 2 42 0 349 272 11 11 chr1 55254779 55254871 -187409482 - MARNA DNA Mariner -357 229 138 1734 201 30 0 chr1 55255245 55255584 -187408769 - MLT1A1 LTR MaLR -16 349 1 407 297 28 14 chr1 55255606 55255751 -187408602 + MIR3 SINE MIR 52 198 -10 237 143 107 18 chr1 55256137 55256193 -187408160 - MIR SINE MIR -91 171 111 185 203 78 78 chr1 55257186 55257250 -187407103 - L3 LINE CR1 -1 1576 1513 272 305 35 64 chr1 55257718 55257859 -187406494 + L2 LINE L2 2932 3068 -204 287 279 0 0 chr1 55258515 55258594 -187405759 + L2 LINE L2 2924 3002 -270 478 199 227 7 chr1 55259321 55259462 -187404891 + MIR SINE MIR 85 256 -6 262 267 95 17 chr1 55259503 55259619 -187404734 - L2 LINE L2 -9 3304 3180 204 40 0 0 chr1 55260702 55260727 -187403626 + (T)n Simple_repeat Simple_repeat 1 25 0 3536 102 21 4 chr1 55260980 55261500 -187402853 - L1PA14 LINE L1 0 6161 5633 244 294 182 21 chr1 55261790 55261933 -187402420 - MIR SINE MIR -20 242 77 597 246 154 5 chr1 55261967 55262162 -187402191 + MIR SINE MIR 35 258 -4 823 259 44 5 chr1 55262927 55263132 -187401221 - MIR SINE MIR -33 229 17 2156 135 6 16 chr1 55263162 55263473 -187400880 + AluSx SINE Alu 1 308 -4 209 321 64 9 chr1 55264340 55264449 -187399904 - L2 LINE L2 -455 2859 2745 218 333 18 0 chr1 55265088 55265145 -187399208 + L2 LINE L2 3122 3179 -93 1831 169 17 36 chr1 55266080 55266436 -187397917 - MLT1A1 LTR MaLR 0 365 17 351 287 11 0 chr1 55266509 55266603 -187397750 - MIR SINE MIR -55 153 59 382 268 101 39 chr1 55266837 55267016 -187397337 + MIR SINE MIR 37 226 -36 1849 168 13 10 chr1 55267104 55267407 -187396946 + AluSx SINE Alu 1 304 -8 1297 96 100 43 chr1 55267418 55267648 -187396705 + L1MD2 LINE L1 6116 6358 -1 667 278 95 16 chr1 55267779 55268031 -187396322 + L2 LINE L2 3035 3306 -7 239 300 121 29 chr1 55268258 55268398 -187395955 - L2 LINE L2 -1 3312 3160 3526 154 53 8 chr1 55269159 55269794 -187394559 - L1MC3 LINE L1 -1 7784 7121 725 296 137 55 chr1 55269799 55270368 -187393985 - L2 LINE L2 -10 3303 2651 1751 171 0 18 chr1 55270368 55270654 -187393699 - AluJb SINE Alu -31 281 1 725 296 137 55 chr1 55270654 55270958 -187393395 - L2 LINE L2 -662 2651 2373 197 286 20 0 chr1 55271389 55271438 -187392915 - L2 LINE L2 -10 3303 3254 1630 177 25 47 chr1 55271764 55272126 -187392227 - MLT1A1 LTR MaLR -11 354 1 208 147 0 0 chr1 55272334 55272368 -187391985 + (TAA)n Simple_repeat Simple_repeat 1 34 0 239 318 47 37 chr1 55273171 55273278 -187391075 + L2 LINE L2 3164 3271 -1 312 298 102 31 chr1 55273522 55273747 -187390606 + MLT1I LTR MaLR 68 308 -101 479 245 82 14 chr1 55273759 55273906 -187390447 + MLT1H LTR MaLR 393 549 0 214 327 60 48 chr1 55273953 55274204 -187390149 - L2 LINE L2 -443 2871 2618 287 250 11 65 chr1 55274204 55274296 -187390057 + L2 LINE L2 3227 3313 0 245 244 98 12 chr1 55274820 55274902 -187389451 - L2 LINE L2 -36 3236 3148 241 207 52 0 chr1 55274918 55274976 -187389377 + MIR SINE MIR 84 144 -64 312 259 78 0 chr1 55275342 55275458 -187388895 + MER117 DNA MER1_type 24 148 -49 497 282 18 64 chr1 55275534 55275754 -187388599 - L2 LINE L2 -5 3308 3099 333 0 0 0 chr1 55277100 55277137 -187387216 + (TG)n Simple_repeat Simple_repeat 2 38 0 497 289 127 13 chr1 55277195 55277423 -187386930 + L3 LINE CR1 1251 1504 -73 2085 138 0 0 chr1 55277523 55277851 -187386502 - AluSx SINE Alu 0 328 1 201 171 24 0 chr1 55278885 55278926 -187385427 + (CTGGGG)n Simple_repeat Simple_repeat 1 42 0 243 161 0 0 chr1 55279223 55279279 -187385074 + C-rich Low_complexity Low_complexity 1 56 0 220 328 62 0 chr1 55279634 55279698 -187384655 + MIR3 SINE MIR 95 162 -46 839 251 148 5 chr1 55281696 55281919 -187382434 + MIR SINE MIR 8 262 0 39707 65 6 3 chr1 55282097 55288235 -187376118 - L1PA5 LINE L1 0 6154 4 189 121 0 0 chr1 55289789 55289822 -187374531 + (CA)n Simple_repeat Simple_repeat 2 34 0 231 299 167 59 chr1 55289824 55290112 -187374241 + L2 LINE L2 2978 3296 -17 397 263 50 61 chr1 55290684 55290882 -187373471 - MIR SINE MIR 0 262 67 254 230 239 58 chr1 55291778 55292004 -187372349 - L2 LINE L2 -99 3173 2907 194 302 155 26 chr1 55292444 55292560 -187371793 + MIR SINE MIR 18 148 -114 238 317 37 5 chr1 55292567 55292661 -187371692 + MIR SINE MIR 56 148 -60 201 74 0 0 chr1 55293258 55293285 -187371068 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 217 289 0 0 chr1 55293445 55293497 -187370856 - L2 LINE L2 -3 3269 3218 214 280 13 61 chr1 55293610 55293696 -187370657 - MIR SINE MIR -67 141 67 263 323 152 34 chr1 55293909 55294158 -187370195 + L2 LINE L2 2812 3117 -196 2487 77 3 3 chr1 55294158 55294469 -187369884 - AluY SINE Alu 0 311 1 263 323 152 34 chr1 55294469 55294575 -187369778 + L2 LINE L2 3117 3209 -104 195 42 0 0 chr1 55294615 55294639 -187369714 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 202 221 174 47 chr1 55294798 55294884 -187369469 + MIR SINE MIR 151 247 -15 981 194 55 20 chr1 55294924 55295125 -187369228 - MER3 DNA MER1_type -1 208 1 227 280 114 107 chr1 55295279 55295529 -187368824 - L2 LINE L2 -186 3086 2832 2293 99 0 23 chr1 55295529 55295833 -187368520 + AluY SINE Alu 1 297 -14 227 280 114 107 chr1 55295833 55295853 -187368500 - L2 LINE L2 -440 2832 2814 385 265 229 0 chr1 55296067 55296220 -187368133 - MIR SINE MIR -39 169 42 573 280 113 16 chr1 55296285 55296596 -187367757 + L2 LINE L2 1548 1888 -1426 466 196 40 181 chr1 55296608 55296934 -187367419 + L2 LINE L2 2136 2415 -899 203 281 198 16 chr1 55296949 55297070 -187367283 + L2 LINE L2 3003 3145 -168 840 263 121 16 chr1 55297072 55297525 -187366828 - MLT1H1 LTR MaLR 0 555 55 197 241 17 35 chr1 55297625 55297683 -187366670 + MIR3 SINE MIR 146 202 -6 597 229 26 33 chr1 55297793 55297946 -187366407 - L2 LINE L2 0 3313 3162 420 276 8 16 chr1 55298028 55298155 -187366198 + MIR SINE MIR 22 147 -61 367 322 48 39 chr1 55299413 55299621 -187364732 - L2 LINE L2 -17 3255 3046 714 236 64 0 chr1 55299630 55299787 -187364566 + MER96 DNA MER1_type? 9 175 0 364 270 36 36 chr1 55299809 55299920 -187364433 - L2 LINE L2 -243 3029 2919 194 342 63 0 chr1 55300051 55300130 -187364223 - L2 LINE L2 -217 3055 2972 662 270 30 30 chr1 55300527 55300727 -187363626 - MIR SINE MIR -61 201 2 354 264 11 11 chr1 55300736 55300827 -187363526 + MIR SINE MIR 61 151 -57 661 213 156 6 chr1 55300845 55301005 -187363348 - MER5A DNA MER1_type 0 189 6 239 216 20 0 chr1 55301156 55301207 -187363146 - MIR SINE MIR -61 147 96 301 315 93 3 chr1 55302763 55303052 -187361301 + L1M4 LINE L1 4204 4518 -1628 309 282 100 9 chr1 55303111 55303221 -187361132 + MIR SINE MIR 124 243 -19 333 279 86 43 chr1 55303322 55303462 -187360891 + MIR SINE MIR 117 262 0 205 227 168 84 chr1 55303816 55303935 -187360418 + L3 LINE CR1 1416 1544 -33 2313 130 61 15 chr1 55304933 55304970 -187359383 - MLT2D LTR ERVL -3 411 377 597 28 0 0 chr1 55304970 55305041 -187359312 + (TG)n Simple_repeat Simple_repeat 2 72 0 2313 130 61 15 chr1 55305041 55305394 -187358959 - MLT2D LTR ERVL -37 377 3 655 313 62 65 chr1 55305496 55306304 -187358049 - L2 LINE L2 0 3272 2459 330 307 39 17 chr1 55306287 55306441 -187357912 - MIR SINE MIR -29 179 18 * 551 293 116 18 chr1 55306848 55307073 -187357280 + MIR SINE MIR 8 254 -8 341 321 87 38 chr1 55307963 55308147 -187356206 + MIR3 SINE MIR 16 208 0 290 312 112 16 chr1 55308135 55308260 -187356093 - L2 LINE L2 0 3272 3136 * 323 256 47 0 chr1 55308654 55308740 -187355613 + MIR SINE MIR 76 165 -97 219 337 23 0 chr1 55308759 55308845 -187355508 - MIR SINE MIR -40 222 135 367 237 43 21 chr1 55309320 55309413 -187354940 - MIR3 SINE MIR -49 159 65 206 401 20 7 chr1 55309642 55309789 -187354564 + (CTCA)n Simple_repeat Simple_repeat 3 151 0 * 302 330 0 0 chr1 55309687 55309790 -187354563 + (TTTA)n Simple_repeat Simple_repeat 2 104 0 211 322 109 28 chr1 55309790 55310001 -187354352 - L2 LINE L2 -78 3194 2967 440 289 92 7 chr1 55310400 55310552 -187353801 + MIR SINE MIR 8 172 -90 2010 139 0 41 chr1 55311185 55311502 -187352851 - AluJo SINE Alu -8 304 1 571 293 58 16 chr1 55311858 55312046 -187352307 + MIR SINE MIR 46 241 -21 286 337 108 75 chr1 55312234 55312661 -187351692 + L2 LINE L2 2832 3272 0 371 290 65 0 chr1 55313304 55313428 -187350925 + MIR SINE MIR 13 144 -118 293 242 0 77 chr1 55313779 55313870 -187350483 - L2 LINE L2 -2 3311 3228 191 136 17 119 chr1 55314035 55314094 -187350259 + L2 LINE L2 3176 3228 -44 531 200 84 52 chr1 55314938 55315116 -187349237 + MIR SINE MIR 34 216 -46 209 314 192 16 chr1 55315684 55315939 -187348414 + L3 LINE CR1 1113 1412 -165 701 220 119 0 chr1 55317033 55317192 -187347161 + MER45A DNA AcHobo 1 178 0 241 196 0 0 chr1 55317717 55317763 -187346590 - MIR SINE MIR -55 207 162 761 270 189 8 chr1 55317819 55318189 -187346164 - MLT1J LTR MaLR -74 437 1 206 234 47 16 chr1 55318206 55318270 -187346083 - MIR SINE MIR -62 146 81 206 374 30 8 chr1 55318356 55318487 -187345866 - L3 LINE CR1 -59 1518 1385 204 364 10 20 chr1 55318496 55318595 -187345758 - L2 LINE L2 -144 3128 3031 467 88 0 0 chr1 55318750 55318818 -187345535 + Alu SINE Alu 245 312 0 565 202 72 39 chr1 55318835 55319056 -187345297 + MIR SINE MIR 6 238 -24 481 288 7 14 chr1 55319135 55319274 -187345079 + MIR SINE MIR 52 189 -73 293 304 113 9 chr1 55320273 55320388 -187343965 + MIR SINE MIR 21 147 -61 381 306 64 29 chr1 55320830 55321003 -187343350 + MIR SINE MIR 77 255 -7 320 383 95 0 chr1 55321025 55321247 -187343106 + MIR SINE MIR 20 262 0 1852 203 34 31 chr1 55321429 55321906 -187342447 + L1ME1 LINE L1 3609 4086 -2060 * 3292 209 58 12 chr1 55321902 55322793 -187341560 + L1ME1 LINE L1 5230 6166 0 508 309 27 23 chr1 55323546 55323802 -187340551 + LTR16B LTR ERVL 192 448 -16 191 132 26 0 chr1 55323877 55323915 -187340438 - L2 LINE L2 0 3313 3275 215 344 0 42 chr1 55324241 55324337 -187340016 + MIR SINE MIR 161 252 -10 387 0 0 0 chr1 55324413 55324456 -187339897 + (TG)n Simple_repeat Simple_repeat 2 44 0 299 246 138 65 chr1 55324582 55324720 -187339633 + MIR3 SINE MIR 29 176 -32 476 328 61 35 chr1 55324981 55325210 -187339143 - MIR SINE MIR -8 254 20 749 251 72 48 chr1 55325311 55325562 -187338791 + MIR SINE MIR 4 260 -2 263 191 0 0 chr1 55326160 55326207 -187338146 - L2 LINE L2 -2 3270 3224 1111 216 9 9 chr1 55326248 55326475 -187337878 - MIR SINE MIR -5 257 31 305 319 73 35 chr1 55326544 55326725 -187337628 - MIR3 SINE MIR -68 140 10 246 310 0 0 chr1 55326759 55326901 -187337452 + (TG)n Simple_repeat Simple_repeat 1 142 0 226 306 139 29 chr1 55326944 55327117 -187337236 + MIR3 SINE MIR 5 196 -12 248 238 96 15 chr1 55327664 55327808 -187336545 + MIR SINE MIR 16 169 -76 307 261 43 43 chr1 55328254 55328369 -187335984 - L2 LINE L2 -593 2721 2607 324 237 2 14 chr1 55328453 55328534 -187335819 + MIR SINE MIR 77 156 -64 485 322 44 10 chr1 55328550 55328755 -187335598 + MIR SINE MIR 50 261 -1 189 0 0 0 chr1 55329251 55329272 -187335081 + (TCTCTG)n Simple_repeat Simple_repeat 4 24 0 239 299 8 60 chr1 55329813 55329930 -187334423 - MIR3 SINE MIR -94 114 4 349 264 0 11 chr1 55330608 55330695 -187333658 + MIR SINE MIR 68 153 -55 909 201 0 0 chr1 55330695 55331000 -187333353 + (ATGGTG)n Simple_repeat Simple_repeat 1 305 0 537 275 81 0 chr1 55331033 55331182 -187333171 - MIR SINE MIR -44 218 58 417 372 70 5 chr1 55331765 55331964 -187332389 - MIR SINE MIR -11 251 40 330 288 81 9 chr1 55332366 55332477 -187331876 - MIR SINE MIR -68 194 76 235 295 95 21 chr1 55332545 55332559 -187331794 - HAL1b LINE L1 -48 1300 1287 347 277 28 80 chr1 55332559 55332808 -187331545 - L1ME4a LINE L1 -81 6040 1199 338 329 63 28 chr1 55333258 55333401 -187330952 + MIR3 SINE MIR 1 148 -60 694 228 23 100 chr1 55334426 55334685 -187329668 + MIR SINE MIR 15 253 -9 374 242 0 111 chr1 55334747 55334900 -187329453 + MIR3 SINE MIR 35 170 -38 236 200 14 0 chr1 55335152 55335222 -187329131 + GA-rich Low_complexity Low_complexity 2 72 0 227 282 14 14 chr1 55335635 55335706 -187328647 - MIR SINE MIR -5 257 187 252 297 48 61 chr1 55336554 55336719 -187327634 + L2 LINE L2 2897 3059 -213 225 153 125 56 chr1 55337344 55337416 -187326937 - L2 LINE L2 -35 3278 3202 313 300 156 70 chr1 55337671 55337928 -187326425 - L2 LINE L2 -98 3174 2896 661 125 100 0 chr1 55337950 55338070 -187326283 - MER3 DNA MER1_type 0 209 78 1699 175 32 0 chr1 55338091 55338376 -187325977 + AluJo SINE Alu 1 294 -18 311 335 101 17 chr1 55338962 55339141 -187325212 + L2 LINE L2 3006 3199 -73 231 336 100 18 chr1 55339181 55339291 -187325062 + L2 LINE L2 3086 3204 -68 425 313 49 18 chr1 55340326 55340518 -187323835 + MIR SINE MIR 45 242 -20 691 256 217 50 chr1 55340731 55341113 -187323240 - LTR16A LTR ERVL -4 446 1 207 324 40 0 chr1 55341210 55341284 -187323069 + L2 LINE L2 2983 3059 -213 294 132 0 0 chr1 55341907 55341960 -187322393 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 1043 197 132 27 chr1 55341994 55342289 -187322064 - MER46C DNA MER2_type -1 337 12 190 244 0 0 chr1 55342781 55342826 -187321527 - L2 LINE L2 0 3272 3228 821 216 197 57 chr1 55343516 55343965 -187320388 + L2 LINE L2 2786 3301 -12 587 260 156 5 chr1 55343980 55344172 -187320181 - MIR SINE MIR -20 242 22 180 286 259 26 chr1 55345902 55346091 -187318262 + L2 LINE L2 3037 3269 -3 1020 209 34 30 chr1 55346459 55346693 -187317660 - MIR SINE MIR 0 262 28 248 235 25 25 chr1 55346736 55346817 -187317536 + L2 LINE L2 3191 3271 -1 183 42 0 0 chr1 55347617 55347641 -187316712 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2159 257 159 26 chr1 55348124 55349009 -187315344 + L2 LINE L2 1894 2996 -317 1808 191 0 16 chr1 55349009 55349364 -187314989 - AluJb SINE Alu 0 312 1 2159 257 159 26 chr1 55349364 55349688 -187314665 + L2 LINE L2 2996 3276 -37 339 222 368 38 chr1 55349692 55349877 -187314476 - MIR SINE MIR -4 258 13 215 175 25 0 chr1 55350096 55350136 -187314217 + L2 LINE L2 3270 3310 -3 378 324 22 43 chr1 55350925 55351135 -187313218 - MIR SINE MIR -13 249 44 369 263 19 45 chr1 55351485 55351650 -187312703 - MIR SINE MIR -64 144 26 400 328 73 6 chr1 55351710 55351887 -187312466 - L2 LINE L2 -2 3270 3082 513 254 124 10 chr1 55352077 55352278 -187312075 - MLT1J2 LTR MaLR -225 225 2 235 338 38 0 chr1 55352284 55352364 -187311989 - L2 LINE L2 -245 3068 2986 727 193 42 66 chr1 55353515 55353728 -187310625 + MIR SINE MIR 7 214 -48 288 258 219 0 chr1 55353793 55353918 -187310435 - MIR3 SINE MIR -63 145 2 269 272 74 25 chr1 55354107 55354188 -187310165 + L2 LINE L2 3177 3261 -11 216 163 0 0 chr1 55354198 55354241 -187310112 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 192 293 143 71 chr1 55354256 55354396 -187309957 - L2 LINE L2 -841 2473 2324 961 321 67 33 chr1 55355365 55355816 -187308537 - L2 LINE L2 0 3272 2807 323 219 31 31 chr1 55356280 55356376 -187307977 + MIR SINE MIR 53 148 -60 290 304 128 16 chr1 55356930 55357236 -187307117 + L2 LINE L2 2635 2974 -340 186 269 0 173 chr1 55357736 55357892 -187306461 - MIR SINE MIR -62 146 18 1664 192 30 0 chr1 55358603 55358905 -187305448 - AluJo SINE Alu -1 311 1 207 349 0 0 chr1 55359353 55359419 -187304934 + MIR SINE MIR 151 216 -46 611 197 225 0 chr1 55360846 55361024 -187303329 + L2 LINE L2 2853 3070 -243 817 223 0 17 chr1 55361037 55361212 -187303141 + AluJb SINE Alu 137 308 -4 186 227 0 0 chr1 55361224 55361268 -187303085 + (CA)n Simple_repeat Simple_repeat 2 45 0 845 227 32 28 chr1 55361268 55361484 -187302869 + L2 LINE L2 3094 3310 -3 305 257 73 18 chr1 55361495 55361604 -187302749 - MIR SINE MIR -64 144 30 265 328 52 45 chr1 55362021 55362155 -187302198 - L2 LINE L2 0 3313 3179 441 256 77 39 chr1 55362629 55362785 -187301568 + MIR SINE MIR 20 181 -81 378 291 127 19 chr1 55362803 55362961 -187301392 + L2 LINE L2 2796 2970 -344 1927 164 33 63 chr1 55363002 55363093 -187301260 - MLT2D LTR ERVL 0 414 322 180 0 0 0 chr1 55363093 55363113 -187301240 + (CA)n Simple_repeat Simple_repeat 2 21 0 1927 164 33 63 chr1 55363113 55363448 -187300905 - MLT2D LTR ERVL -92 322 1 454 168 32 0 chr1 55363448 55363543 -187300810 - ERVL-D LTR ERVL -7 5757 5660 189 350 210 14 chr1 55363961 55364104 -187300249 + L2 LINE L2 3102 3272 0 292 263 79 26 chr1 55364172 55364286 -187300067 + MIR SINE MIR 15 134 -128 743 244 90 26 chr1 55364342 55364576 -187299777 + MIR SINE MIR 5 253 -9 235 264 38 65 chr1 55364835 55364966 -187299387 + MIR SINE MIR 35 161 -69 399 262 29 52 chr1 55365093 55365239 -187299114 + MIR SINE MIR 14 149 -59 195 186 93 0 chr1 55365486 55365529 -187298824 + L3 LINE CR1 1524 1570 -7 248 268 18 0 chr1 55365555 55365611 -187298742 - L2 LINE L2 -5 3308 3252 324 322 46 0 chr1 55366507 55366594 -187297759 - L2 LINE L2 -42 3230 3140 273 200 53 13 chr1 55366776 55366851 -187297502 - MLT1H LTR MaLR -258 291 214 347 247 12 0 chr1 55366935 55367020 -187297333 - MLT1H LTR MaLR -462 87 2 352 321 93 41 chr1 55367033 55367532 -187296821 - L2 LINE L2 -182 3090 2570 213 202 222 40 chr1 55367729 55367792 -187296561 + MIR SINE MIR 36 86 -122 186 43 0 0 chr1 55367792 55367815 -187296538 + (TTCCC)n Simple_repeat Simple_repeat 5 27 0 213 202 222 40 chr1 55367815 55367850 -187296503 + MIR SINE MIR 86 152 -56 421 303 0 0 chr1 55368821 55368943 -187295410 - MIR SINE MIR -76 186 65 1195 264 68 28 chr1 55369728 55370324 -187294029 + L2 LINE L2 2707 3313 0 246 32 0 0 chr1 55370324 55370355 -187293998 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 180 204 108 65 chr1 55370721 55370814 -187293539 + L2 LINE L2 3144 3240 -32 247 201 37 149 chr1 55371927 55372061 -187292292 + MER94 DNA DNA 16 134 0 232 354 24 48 chr1 55372061 55372270 -187292083 + L2 LINE L2 3068 3271 -1 572 244 72 59 chr1 55372976 55373197 -187291156 - MIR SINE MIR -2 260 37 286 288 0 0 chr1 55373540 55373606 -187290747 + MER91B DNA MER1_type 6 71 -119 308 320 0 0 chr1 55374657 55374732 -187289621 - MIR SINE MIR -108 154 80 221 375 10 0 chr1 55374821 55374925 -187289428 - L2 LINE L2 -23 3249 3145 199 240 202 0 chr1 55375029 55375133 -187289220 + MIR SINE MIR 124 248 -14 1281 183 93 11 chr1 55375208 55375487 -187288866 + AluJo SINE Alu 1 302 0 186 333 114 0 chr1 55375756 55375861 -187288492 - MIR SINE MIR -55 153 37 250 324 36 0 chr1 55376684 55376795 -187287558 + MIR3 SINE MIR 42 156 -52 195 139 0 0 chr1 55377686 55377722 -187286631 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 187 359 49 7 chr1 55377953 55378095 -187286258 - MIR3 SINE MIR -15 193 46 501 299 39 0 chr1 55378945 55379099 -187285254 + MIR SINE MIR 20 179 -83 309 263 159 6 chr1 55379164 55379338 -187285015 - MIR SINE MIR -21 241 33 388 309 59 51 chr1 55380030 55380421 -187283932 - L2 LINE L2 -1606 1708 1315 433 265 33 33 chr1 55380460 55380641 -187283712 + MER117 DNA MER1_type 11 191 -6 214 189 0 75 chr1 55381137 55381190 -187283163 + L3 LINE CR1 1524 1572 -5 270 0 0 0 chr1 55382179 55382209 -187282144 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 199 121 0 0 chr1 55382730 55382763 -187281590 - L2 LINE L2 -213 3059 3027 1637 177 32 26 chr1 55382977 55383287 -187281066 + AluJo SINE Alu 1 312 0 595 143 176 0 chr1 55383470 55383589 -187280764 - MLT1A1 LTR MaLR -225 140 1 352 316 71 0 chr1 55383596 55383764 -187280589 + L1ME3A LINE L1 5762 5941 -229 353 308 23 15 chr1 55384223 55384353 -187280000 - MIR SINE MIR -111 151 21 260 336 45 0 chr1 55384439 55384549 -187279804 + MIR SINE MIR 26 140 -122 410 246 240 11 chr1 55384989 55385168 -187279185 - MIR SINE MIR -38 224 5 484 291 62 62 chr1 55385176 55385581 -187278772 - L2 LINE L2 -456 2858 2454 287 179 119 127 chr1 55386424 55386558 -187277795 + MIR SINE MIR 86 218 -44 576 329 70 0 chr1 55387257 55387470 -187276883 + MIR SINE MIR 10 237 -25 184 319 72 0 chr1 55387498 55387567 -187276786 - MIR SINE MIR -69 193 120 195 129 0 0 chr1 55387709 55387740 -187276613 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 2177 128 12 6 chr1 55388097 55388432 -187275921 + MER1B DNA MER1_type 1 337 0 343 354 101 0 chr1 55388764 55388942 -187275411 - L3 LINE CR1 -15 1562 1367 1889 175 8 48 chr1 55389713 55390112 -187274241 - MLT1B LTR MaLR 0 390 8 286 305 16 23 chr1 55391580 55391708 -187272645 + MIR SINE MIR 23 149 -59 360 64 0 0 chr1 55392317 55392364 -187271989 + (TG)n Simple_repeat Simple_repeat 2 48 0 223 322 99 13 chr1 55392618 55392791 -187271562 - MIR SINE MIR -44 218 36 383 295 98 0 chr1 55393282 55393394 -187270959 - L2 LINE L2 -5 3267 3145 866 259 26 0 chr1 55393614 55393846 -187270507 + MIR SINE MIR 10 247 -15 1032 262 234 19 chr1 55395466 55396516 -187267837 + L2 LINE L2 1957 3245 -68 211 170 43 0 chr1 55396582 55396629 -187267724 - MIR SINE MIR -69 139 91 2090 127 40 7 chr1 55397186 55397485 -187266868 + AluSg1 SINE Alu 1 309 0 227 320 39 47 chr1 55397646 55397774 -187266579 + L2 LINE L2 3146 3272 0 730 249 14 24 chr1 55398735 55398944 -187265409 - MLT1I LTR MaLR -201 208 2 566 328 25 16 chr1 55399765 55400009 -187264344 + MIR SINE MIR 17 262 0 755 283 12 21 chr1 55401420 55401660 -187262693 + MIR SINE MIR 25 262 0 333 155 59 14 chr1 55402523 55402605 -187261748 - MLT1E LTR MaLR -1 653 507 1877 145 3 49 chr1 55402701 55403026 -187261327 - AluSx SINE Alu -2 310 1 370 291 231 28 chr1 55403338 55403466 -187260887 - L1ME4a LINE L1 0 6121 6020 1646 144 49 55 chr1 55403466 55403814 -187260539 - MER7A DNA MER2_type -1 345 2 370 291 231 28 chr1 55403814 55403867 -187260486 - L1ME4a LINE L1 -101 6020 5903 1615 216 0 26 chr1 55403934 55404239 -187260114 - AluJb SINE Alu -15 297 1 255 335 41 16 chr1 55404464 55404658 -187259695 - L1ME3 LINE L1 -204 5958 5760 1859 110 0 4 chr1 55404744 55404989 -187259364 - AluSx SINE Alu -36 276 33 400 162 54 0 chr1 55405089 55405163 -187259190 - AluSq/x SINE Alu -181 132 55 397 308 71 24 chr1 55405163 55405416 -187258937 - L1ME4a LINE L1 -307 5814 5550 707 282 84 80 chr1 55405589 55406053 -187258300 + L2 LINE L2 2848 3313 0 220 323 0 0 chr1 55406082 55406147 -187258206 + L2 LINE L2 3207 3271 -1 231 308 51 17 chr1 55406651 55406768 -187257585 - MIR SINE MIR -56 206 86 1989 154 40 0 chr1 55407202 55407527 -187256826 - AluJo SINE Alu 0 337 1 1305 203 19 61 chr1 55408049 55408360 -187255993 + AluJo SINE Alu 1 298 -14 2837 3 0 23 chr1 55408360 55408670 -187255683 + AluYb8 SINE Alu 1 303 -15 38 22 0 0 chr1 55408780 55408825 -187255528 + AT_rich Low_complexity Low_complexity 1 45 0 1671 156 18 87 chr1 55409780 55410172 -187254181 + MLT1A1 LTR MaLR 1 365 0 208 250 0 0 chr1 55410607 55410655 -187253698 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 335 293 68 15 chr1 55411270 55411403 -187252950 + MIR3 SINE MIR 14 153 -55 708 138 156 12 chr1 55411854 55412021 -187252332 + MIR SINE MIR 65 255 -7 382 332 48 48 chr1 55412120 55412454 -187251899 + L2 LINE L2 2924 3257 -15 2076 129 3 40 chr1 55414010 55414358 -187249995 - MER1B DNA MER1_type 0 337 3 186 191 0 0 chr1 55414399 55414446 -187249907 + CT-rich Low_complexity Low_complexity 3 49 0 239 384 89 0 chr1 55414448 55414560 -187249793 - L2 LINE L2 -1 3271 3150 183 283 0 0 chr1 55415303 55415349 -187249004 - MIR SINE MIR -48 214 169 345 279 183 1 chr1 55416708 55416907 -187247446 - MIR SINE MIR -1 261 30 227 262 71 12 chr1 55417034 55417118 -187247235 - MIR3 SINE MIR -14 194 106 192 40 0 0 chr1 55417727 55417752 -187246601 + (CACCC)n Simple_repeat Simple_repeat 2 26 0 717 191 32 0 chr1 55418352 55418509 -187245844 - L1MC1 LINE L1 -13 6320 6159 7286 194 41 34 chr1 55418509 55419433 -187244920 - L1MC1 LINE L1 -14 6319 5404 198 0 0 0 chr1 55419433 55419455 -187244898 + (TA)n Simple_repeat Simple_repeat 1 22 0 7286 194 41 34 chr1 55419455 55421412 -187242941 - L1MC1 LINE L1 -929 5404 3268 836 153 9 135 chr1 55421414 55421643 -187242710 - MER20 DNA MER1_type -19 200 1 260 271 153 0 chr1 55421736 55421821 -187242532 + MIR3 SINE MIR 108 205 -3 1282 270 44 26 chr1 55421826 55422215 -187242138 - MSTD LTR MaLR 0 396 1 192 255 21 0 chr1 55422218 55422265 -187242088 - MIR SINE MIR -62 146 99 194 356 50 10 chr1 55422687 55422788 -187241565 + L2 LINE L2 3143 3247 -25 359 318 123 18 chr1 55422794 55422964 -187241389 + MIR SINE MIR 34 221 -41 230 314 82 25 chr1 55424105 55424264 -187240089 + MIR SINE MIR 17 184 -78 1817 161 0 3 chr1 55424269 55424633 -187239720 + AluJo SINE Alu 1 363 0 1378 122 99 23 chr1 55424667 55424930 -187239423 - MER44D DNA MER2_type -47 562 10 266 315 89 76 chr1 55425129 55425431 -187238922 - L2 LINE L2 -2 3270 2965 281 277 60 0 chr1 55426448 55426531 -187237822 - L2 LINE L2 0 3313 3226 880 258 9 23 chr1 55426871 55427092 -187237261 - MLT1A2 LTR MaLR -16 358 141 274 312 32 40 chr1 55427396 55427521 -187236832 + MIR SINE MIR 16 139 -123 224 239 15 15 chr1 55428028 55428095 -187236258 + MIR SINE MIR 45 111 -151 218 327 40 10 chr1 55428278 55428379 -187235974 - L3 LINE CR1 -52 1525 1422 510 236 72 16 chr1 55429406 55429593 -187234760 + MIR SINE MIR 5 208 -54 203 352 104 33 chr1 55429637 55429819 -187234534 - MIR3 SINE MIR -3 205 11 311 365 29 15 chr1 55429855 55429992 -187234361 + MER91A DNA MER1_type 45 183 -13 357 282 17 17 chr1 55430294 55430468 -187233885 + CT-rich Low_complexity Low_complexity 1 174 0 186 104 42 21 chr1 55430537 55430585 -187233768 + CT-rich Low_complexity Low_complexity 2 50 0 348 288 63 0 chr1 55431293 55431404 -187232949 - L2 LINE L2 0 3272 3155 229 295 0 26 chr1 55431451 55431529 -187232824 - L2 LINE L2 -662 2652 2577 349 318 163 4 chr1 55431695 55431953 -187232400 - L2 LINE L2 -994 2320 2022 199 403 0 18 chr1 55432844 55433001 -187231352 - MIR SINE MIR -63 145 41 285 224 93 98 chr1 55433064 55433278 -187231075 + L2 LINE L2 2885 3097 -175 231 229 102 59 chr1 55433541 55433659 -187230694 - MIR SINE MIR -66 142 20 250 301 12 12 chr1 55434377 55434460 -187229893 + L2 LINE L2 3190 3272 0 671 192 254 5 chr1 55434974 55435167 -187229186 - MIR SINE MIR -20 242 2 699 233 72 6 chr1 55436170 55436350 -187228003 - MIR SINE MIR -4 258 67 624 281 94 5 chr1 55437379 55437603 -187226750 - MIR SINE MIR -8 254 11 585 264 39 22 chr1 55437687 55437899 -187226454 - MIR SINE MIR -2 260 46 748 280 106 10 chr1 55437906 55438217 -187226136 + L2 LINE L2 2973 3313 0 234 319 83 25 chr1 55439018 55439175 -187225178 + L3 LINE CR1 1403 1568 -9 365 295 8 8 chr1 55439635 55439757 -187224596 + MER5A DNA MER1_type 40 161 -28 2467 93 30 35 chr1 55440080 55440446 -187223907 - THE1B LTR MaLR 0 364 1 270 231 64 0 chr1 55441627 55441705 -187222648 - MIR SINE MIR -118 144 62 250 216 194 29 chr1 55443203 55443342 -187221011 + MIR3 SINE MIR 42 203 -5 298 314 64 14 chr1 55443930 55444070 -187220283 - MIR3 SINE MIR -26 182 36 501 290 77 11 chr1 55445091 55445274 -187219079 + MIR SINE MIR 52 246 -16 392 278 96 20 chr1 55446006 55446158 -187218195 + MIR SINE MIR 96 261 -1 199 368 35 0 chr1 55447367 55447481 -187216872 + MIR3 SINE MIR 82 199 -9 256 330 26 9 chr1 55447564 55447679 -187216674 - MIR3 SINE MIR -25 183 67 757 293 22 4 chr1 55448144 55448373 -187215980 + MIR SINE MIR 6 238 -24 5957 186 42 33 chr1 55449022 55449560 -187214793 - L1M4 LINE L1 -5204 1338 807 327 49 0 0 chr1 55449560 55449601 -187214752 + (TG)n Simple_repeat Simple_repeat 2 42 0 5957 186 42 33 chr1 55449601 55450383 -187213970 - L1M4 LINE L1 -5735 807 5 289 325 35 87 chr1 55451266 55451497 -187212856 + L2 LINE L2 3041 3259 -13 180 213 43 0 chr1 55451644 55451691 -187212662 - L2 LINE L2 -2 3270 3222 223 333 0 0 chr1 55451716 55451788 -187212565 - MIR SINE MIR -105 157 86 2098 102 3 3 chr1 55451818 55452113 -187212240 - AluY SINE Alu -16 295 1 264 221 0 59 chr1 55452313 55452381 -187211972 + L2 LINE L2 3250 3313 0 268 248 168 26 chr1 55453725 55453838 -187210515 - MIR SINE MIR -61 147 19 362 312 118 36 chr1 55453972 55454389 -187209964 - L2 LINE L2 -1 3271 2821 216 252 65 65 chr1 55456107 55456230 -187208123 - MIR SINE MIR -22 240 118 180 269 179 0 chr1 55456838 55456916 -187207437 - MIR SINE MIR -147 115 24 2006 137 3 0 chr1 55457388 55457681 -187206672 + AluJo SINE Alu 1 294 -18 36 62 0 0 chr1 55457798 55457862 -187206491 + AT_rich Low_complexity Low_complexity 1 64 0 24 32 0 0 chr1 55457930 55457961 -187206392 + AT_rich Low_complexity Low_complexity 1 31 0 211 289 144 22 chr1 55458193 55458283 -187206070 - L2 LINE L2 -3 3269 3169 540 239 9 14 chr1 55458292 55458435 -187205918 - MIR3 SINE MIR -54 154 11 281 216 23 23 chr1 55459042 55459130 -187205223 + MIR SINE MIR 55 142 -66 364 306 141 24 chr1 55459550 55459756 -187204597 + MIR SINE MIR 21 250 -12 297 323 55 0 chr1 55459951 55460078 -187204275 - MIR SINE MIR -35 227 94 232 191 0 0 chr1 55460635 55460677 -187203676 + L3 LINE CR1 1429 1470 -107 327 195 110 0 chr1 55461424 55461506 -187202847 + MIR SINE MIR 118 208 -54 * 482 278 99 23 chr1 55461502 55461701 -187202652 - MIR SINE MIR -50 212 1 246 105 0 0 chr1 55461963 55462001 -187202352 + (TG)n Simple_repeat Simple_repeat 2 39 0 363 304 221 20 chr1 55462287 55462636 -187201717 + L3 LINE CR1 1097 1515 -62 264 267 172 9 chr1 55462771 55462887 -187201466 - MIR3 SINE MIR -67 141 7 224 279 10 39 chr1 55463418 55463522 -187200831 - L3 LINE CR1 -130 1447 1347 205 325 35 59 chr1 55464173 55464342 -187200011 + MIR3 SINE MIR 21 185 -23 262 282 59 0 chr1 55467267 55467352 -187197001 - MIR SINE MIR -75 133 44 430 227 24 78 chr1 55467538 55467740 -187196613 - MIR SINE MIR -50 212 17 810 112 9 0 chr1 55668423 55668539 -186995814 + AluJb SINE Alu 194 310 -2 2024 126 144 12 chr1 55668539 55668784 -186995569 + L1MB7 LINE L1 5493 5704 -480 198 71 0 0 chr1 55668784 55668812 -186995541 + (TA)n Simple_repeat Simple_repeat 1 28 0 2024 126 144 12 chr1 55668812 55668988 -186995365 + L1MB7 LINE L1 5704 5970 -214 2170 209 12 23 chr1 55669016 55669532 -186994821 + L1ME1 LINE L1 5637 6146 -20 908 226 53 12 chr1 55669603 55669846 -186994507 - MER97a DNA MER1_type? -637 257 5 250 271 177 0 chr1 55669869 55669965 -186994388 - LTR16C LTR ERVL -378 113 1 248 272 101 70 chr1 55670021 55670348 -186994005 + L1MC4 LINE L1 7706 8042 0 489 292 45 6 chr1 55670691 55670869 -186993484 + MLT1K LTR MaLR 317 501 -87 1560 219 117 0 chr1 55670983 55671367 -186992986 + MLT1H1 LTR MaLR 127 555 0 2327 92 16 0 chr1 55671412 55671717 -186992636 - AluY SINE Alu 0 311 2 317 247 26 0 chr1 55671786 55671863 -186992490 - MER69 DNA AcHobo -2447 79 1 238 284 155 0 chr1 55672846 55672962 -186991391 - MIR SINE MIR -16 246 113 317 288 0 0 chr1 55672999 55673079 -186991274 + L2 LINE L2 3229 3308 -5 243 218 7 56 chr1 55674077 55674192 -186990161 + MIR SINE MIR 92 198 -64 218 312 14 23 chr1 55674497 55674637 -186989716 + CT-rich Low_complexity Low_complexity 3 213 0 206 116 23 0 chr1 55676014 55676057 -186988296 + (TA)n Simple_repeat Simple_repeat 1 44 0 1872 229 52 45 chr1 55677303 55677330 -186987023 - L1M4 LINE L1 -920 5226 5201 1858 105 112 7 chr1 55677330 55677606 -186986747 - AluSg SINE Alu -5 305 1 1872 229 52 45 chr1 55677606 55678104 -186986249 - L1M4 LINE L1 -945 5201 4692 2209 108 0 53 chr1 55678104 55678427 -186985926 + AluSx SINE Alu 1 306 -6 1872 229 52 45 chr1 55678427 55678586 -186985767 - L1M4 LINE L1 -1454 4692 4536 357 82 0 0 chr1 55678623 55678632 -186985721 + (TG)n Simple_repeat Simple_repeat 1 58 0 357 82 0 0 chr1 55678632 55678681 -186985672 + (TG)n Simple_repeat Simple_repeat 2 50 0 444 184 129 31 chr1 55678707 55678870 -186985483 - L1M4 LINE L1 -994 5152 4974 1141 274 38 40 chr1 55678881 55679384 -186984969 - L1M4 LINE L1 -1614 4532 4029 2331 107 0 7 chr1 55679384 55679694 -186984659 - AluSg1 SINE Alu -1 308 1 1141 274 38 40 chr1 55679694 55679771 -186984582 - L1M4 LINE L1 -2117 4029 3953 1430 227 106 9 chr1 55679859 55680322 -186984031 - L1ME1 LINE L1 -91 6075 5568 247 184 0 0 chr1 55680721 55680759 -186983594 + L2 LINE L2 3217 3254 -18 490 261 22 11 chr1 55680844 55681024 -186983329 + L1MC5 LINE L1 7744 7925 -36 562 176 49 7 chr1 55682200 55682342 -186982011 + L1MB7 LINE L1 6037 6184 0 1970 120 12 58 chr1 55682970 55683296 -186981057 - AluSx SINE Alu -1 311 1 685 114 0 0 chr1 55683307 55683412 -186980941 - AluSp/q SINE Alu 0 313 209 2287 122 3 0 chr1 55683542 55683845 -186980508 - AluSp SINE Alu -9 304 1 2118 134 0 0 chr1 55684035 55684334 -186980019 - AluSx SINE Alu -13 299 1 237 254 71 79 chr1 55685540 55685666 -186978687 + MIR SINE MIR 138 262 0 21 57 0 0 chr1 55686006 55686041 -186978312 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 55686133 55686170 -186978183 + AT_rich Low_complexity Low_complexity 1 37 0 188 269 15 75 chr1 55686400 55686467 -186977886 + MIR SINE MIR 16 78 -184 1928 148 3 10 chr1 55686503 55686801 -186977552 + AluJo SINE Alu 1 296 -16 1058 178 6 0 chr1 55686803 55686977 -186977376 + AluJb SINE Alu 132 306 -6 4932 216 66 16 chr1 55687135 55688335 -186976018 - L1 LINE L1 -808 5407 4124 2435 98 0 0 chr1 55688335 55688642 -186975711 + AluSx SINE Alu 1 307 -5 4932 216 66 16 chr1 55688642 55688859 -186975494 - L1 LINE L1 -2091 4124 3919 216 326 118 56 chr1 55688866 55689026 -186975327 + L2 LINE L2 2593 2778 -536 2101 115 13 13 chr1 55689026 55689330 -186975023 + AluSx SINE Alu 1 304 -8 216 326 118 56 chr1 55689330 55689439 -186974914 + L2 LINE L2 2778 2879 -435 461 258 10 0 chr1 55689613 55689710 -186974643 - L2 LINE L2 -4 3268 3171 21 36 0 0 chr1 55689795 55689823 -186974530 + AT_rich Low_complexity Low_complexity 1 28 0 202 182 0 0 chr1 55689827 55689860 -186974493 + MIR SINE MIR 220 252 -10 1905 166 34 0 chr1 55690301 55690596 -186973757 + AluSx SINE Alu 1 305 -7 411 287 52 0 chr1 55690637 55690752 -186973601 + L3 LINE CR1 1308 1428 -149 2157 108 0 20 chr1 55691666 55691972 -186972381 + AluSx SINE Alu 1 300 -12 255 174 0 0 chr1 55692054 55692100 -186972253 + L2 LINE L2 3267 3312 -1 2275 77 7 42 chr1 55692217 55692527 -186971826 + AluSq SINE Alu 1 299 -14 1978 62 0 8 chr1 55692643 55692884 -186971469 - AluY SINE Alu -19 292 54 2228 246 105 38 chr1 55692887 55693173 -186971180 - L1MEc LINE L1 -2635 3580 3315 2374 99 0 0 chr1 55693173 55693475 -186970878 - AluSc SINE Alu -7 302 1 2228 246 105 38 chr1 55693475 55694264 -186970089 - L1MEc LINE L1 -2900 3315 2581 2058 132 7 3 chr1 55694264 55694567 -186969786 + AluSq SINE Alu 1 304 -9 2228 246 105 38 chr1 55694567 55694712 -186969641 - L1MEc LINE L1 -3634 2581 2447 2302 110 0 0 chr1 55694712 55695021 -186969332 + AluSg SINE Alu 1 309 -1 2228 246 105 38 chr1 55695021 55695168 -186969185 - L1MEc LINE L1 -3768 2447 2311 2183 102 36 13 chr1 55695168 55695473 -186968880 - AluSx SINE Alu 0 312 1 2228 246 105 38 chr1 55695473 55695773 -186968580 - L1MEc LINE L1 -3904 2311 1848 1485 264 107 72 chr1 55695790 55695940 -186968413 - L1MEc LINE L1 -5247 1149 1006 2079 130 0 3 chr1 55695940 55696233 -186968120 - AluSx SINE Alu -16 296 5 1485 264 107 72 chr1 55696233 55697160 -186967193 - L1MEc LINE L1 -5390 1006 35 471 238 30 92 chr1 55697704 55697743 -186966610 - MIR SINE MIR -10 252 212 809 230 17 64 chr1 55697743 55697885 -186966468 - MER58A DNA MER1_type -2196 224 96 2229 92 6 19 chr1 55697885 55698201 -186966152 + AluSx SINE Alu 1 312 0 809 230 17 64 chr1 55698201 55698293 -186966060 - MER58A DNA MER1_type -2324 96 1 471 238 30 92 chr1 55698293 55698316 -186966037 - MIR SINE MIR -50 212 189 323 225 0 0 chr1 55698316 55698396 -186965957 + MER116 DNA Mariner 1 80 0 471 238 30 92 chr1 55698396 55698496 -186965857 - MIR SINE MIR -73 189 99 197 332 115 78 chr1 55698943 55699151 -186965202 + L2 LINE L2 3020 3240 -32 2584 128 16 38 chr1 55699151 55699189 -186965164 + MER57B LTR ERV1 1 38 -396 2002 152 0 10 chr1 55699189 55699492 -186964861 - AluSx SINE Alu -12 300 1 2584 128 16 38 chr1 55699492 55699897 -186964456 + MER57B LTR ERV1 38 434 0 197 332 115 78 chr1 55699897 55699932 -186964421 + L2 LINE L2 3240 3272 0 273 247 216 0 chr1 55700050 55700147 -186964206 - MIR SINE MIR -64 198 81 205 323 0 0 chr1 55700155 55700220 -186964133 + GA-rich Low_complexity Low_complexity 4 68 0 1309 115 6 0 chr1 55700320 55700502 -186963851 + AluSx SINE Alu 1 183 -129 354 291 77 38 chr1 55701361 55701527 -186962826 + MIR SINE MIR 39 207 -40 713 292 51 29 chr1 55702425 55702897 -186961456 + L1MC4 LINE L1 7312 7910 -132 33 90 0 0 chr1 55702964 55703053 -186961300 + AT_rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr1 55703098 55703119 -186961234 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 55703144 55703165 -186961188 + AT_rich Low_complexity Low_complexity 1 21 0 36 40 0 0 chr1 55703344 55703394 -186960959 + AT_rich Low_complexity Low_complexity 1 50 0 1867 167 7 10 chr1 55703586 55703886 -186960467 - AluJb SINE Alu -13 299 1 24 32 0 0 chr1 55704115 55704146 -186960207 + AT_rich Low_complexity Low_complexity 1 31 0 706 120 0 9 chr1 55705216 55705324 -186959029 + U6 snRNA snRNA 1 107 0 186 43 0 0 chr1 55705328 55705351 -186959002 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 30 45 0 0 chr1 55706094 55706138 -186958215 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr1 55706203 55706226 -186958127 + AT_rich Low_complexity Low_complexity 1 23 0 220 111 37 19 chr1 55706537 55706591 -186957762 + A-rich Low_complexity Low_complexity 4 58 0 1056 166 18 69 chr1 55708658 55708875 -186955478 + AluJb SINE Alu 87 292 -20 188 158 53 0 chr1 55708924 55708962 -186955391 - MIR3 SINE MIR -8 200 161 203 239 45 45 chr1 55710486 55710553 -186953800 - L2 LINE L2 -7 3265 3199 270 273 27 55 chr1 55710579 55710689 -186953664 - L2 LINE L2 -150 3122 3016 199 310 35 0 chr1 55710756 55710814 -186953539 - L2 LINE L2 -9 3263 3204 1728 122 41 0 chr1 55710817 55711062 -186953291 + AluSq SINE Alu 1 255 -58 297 120 20 0 chr1 55711062 55711112 -186953241 - AluJo SINE Alu -166 136 86 780 236 10 0 chr1 55711121 55711324 -186953029 - L1M3c LINE L1 -4978 1163 959 1504 170 0 0 chr1 55712823 55713058 -186951295 + AluJb SINE Alu 64 298 -14 242 313 107 27 chr1 55713626 55713738 -186950615 + L2 LINE L2 3144 3264 -8 22 35 0 0 chr1 55714435 55714464 -186949889 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 55715471 55715500 -186948853 + AT_rich Low_complexity Low_complexity 1 29 0 850 195 31 15 chr1 55716386 55716581 -186947772 - Tigger7 DNA MER2_type 0 2487 2290 3584 166 40 14 chr1 55716589 55717290 -186947063 - Tigger7 DNA MER2_type -1768 719 1 1811 88 153 0 chr1 55717396 55717657 -186946696 + AluSg1 SINE Alu 1 301 -8 487 261 76 60 chr1 55718362 55718418 -186945935 - MIR SINE MIR -5 257 203 2346 76 7 0 chr1 55718418 55718709 -186945644 - AluSx SINE Alu -19 293 1 487 261 76 60 chr1 55718709 55718901 -186945452 - MIR SINE MIR -59 203 5 2257 108 3 13 chr1 55719017 55719324 -186945029 + AluSq SINE Alu 1 304 -9 577 275 127 0 chr1 55719387 55719576 -186944777 - MIR SINE MIR 0 262 50 213 204 0 0 chr1 55720345 55720389 -186943964 + (CA)n Simple_repeat Simple_repeat 2 45 0 572 275 131 8 chr1 55720398 55720642 -186943711 + L2 LINE L2 1699 1972 -1342 1232 215 106 71 chr1 55720653 55721105 -186943248 - L1ME3A LINE L1 -9 6161 5694 987 339 76 21 chr1 55721136 55721885 -186942468 + L2 LINE L2 2043 2832 -482 294 265 140 7 chr1 55722104 55722240 -186942113 + L2 LINE L2 3159 3312 -1 2398 83 7 0 chr1 55723287 55723588 -186940765 + AluSq SINE Alu 2 304 -9 218 274 20 40 chr1 55723883 55724022 -186940331 - MIR SINE MIR -45 217 85 1985 90 4 8 chr1 55724039 55724306 -186940047 + AluSg SINE Alu 1 266 -44 1882 154 3 0 chr1 55724409 55724701 -186939652 + Tigger1 DNA MER2_type 2126 2418 0 4237 159 31 40 chr1 55725962 55726733 -186937620 + MER54B LTR ERVL 1 764 -29 1089 84 28 0 chr1 55726733 55726876 -186937477 + AluSx SINE Alu 1 147 -166 27665 144 10 23 chr1 55726893 55728481 -186935872 + L1PA10 LINE L1 59 1665 -4844 2355 93 0 10 chr1 55728481 55728782 -186935571 + AluY SINE Alu 1 298 -13 27665 144 10 23 chr1 55728782 55733733 -186930620 + L1PA10 LINE L1 1665 6509 0 1094 110 27 0 chr1 55733774 55733920 -186930433 + AluSx SINE Alu 147 296 -14 2603 182 135 5 chr1 55733955 55734548 -186929805 + L1MC4 LINE L1 7097 7766 -276 391 112 10 51 chr1 55734549 55734647 -186929706 + (TTCC)n Simple_repeat Simple_repeat 1 94 0 862 42 25 0 chr1 55734648 55734766 -186929587 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 1578 181 3 14 chr1 55734767 55735049 -186929304 - AluJb SINE Alu -33 279 1 800 231 209 35 chr1 55735195 55735741 -186928612 - HAL1 LINE L1 -1676 831 114 1201 115 24 48 chr1 55735741 55735949 -186928404 + L1MA9 LINE L1 6110 6312 0 800 231 209 35 chr1 55735949 55736087 -186928266 - HAL1 LINE L1 -2393 114 1 186 103 0 0 chr1 55736157 55736186 -186928167 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 299 306 7 62 chr1 55736393 55736537 -186927816 + L2 LINE L2 3137 3272 0 298 305 11 11 chr1 55737566 55737661 -186926692 + MIR SINE MIR 38 132 -76 233 289 13 0 chr1 55737750 55737826 -186926527 + MER103 DNA DNA 9 85 -81 218 276 184 20 chr1 55739297 55739395 -186924958 + L2 LINE L2 3159 3272 0 2026 98 0 72 chr1 55739803 55740110 -186924243 + AluSx SINE Alu 1 285 -27 964 24 16 8 chr1 55740110 55740237 -186924116 + (GGAA)n Simple_repeat Simple_repeat 3 130 0 242 140 0 20 chr1 55740439 55740489 -186923864 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 306 217 84 24 chr1 55741124 55741207 -186923146 + MER5B DNA MER1_type 1 88 -90 603 280 89 0 chr1 55741720 55741888 -186922465 + MIR SINE MIR 52 234 -28 195 42 0 0 chr1 55742056 55742080 -186922273 + (CACAC)n Simple_repeat Simple_repeat 5 28 0 282 203 125 0 chr1 55742375 55742439 -186921914 + MER116 DNA Mariner 1 72 -8 2278 116 0 0 chr1 55742756 55743057 -186921296 - AluSx SINE Alu -11 301 1 323 333 86 0 chr1 55743334 55743451 -186920902 + L2 LINE L2 3142 3268 -4 249 319 25 69 chr1 55744340 55744544 -186919809 + L2 LINE L2 3119 3313 0 5796 111 17 1 chr1 55744705 55745571 -186918782 - L1MA2 LINE L1 -6 6298 5419 22 0 0 0 chr1 55745712 55745734 -186918619 + AT_rich Low_complexity Low_complexity 1 22 0 349 249 24 77 chr1 55746043 55746212 -186918141 + L1MEd LINE L1 113 272 -5933 1977 146 14 0 chr1 55746335 55746629 -186917724 + AluSq SINE Alu 1 298 -15 1406 271 45 54 chr1 55746634 55747265 -186917088 + L1MEd LINE L1 1210 1836 -4560 2363 85 0 7 chr1 55747265 55747570 -186916783 - AluSg1 SINE Alu -4 305 3 1406 271 45 54 chr1 55747570 55747601 -186916752 + L1MEd LINE L1 1836 1866 -4530 2971 213 38 26 chr1 55747601 55748314 -186916039 + L1MB4 LINE L1 4603 5327 -819 2248 96 0 0 chr1 55748314 55748596 -186915757 + AluSx SINE Alu 23 304 -8 2971 213 38 26 chr1 55748596 55748648 -186915705 + L1MB4 LINE L1 5327 5377 -769 1660 175 54 0 chr1 55748645 55748960 -186915393 + L1MB4 LINE L1 5687 6018 -162 * 956 237 7 68 chr1 55748956 55749235 -186915118 - L1M4 LINE L1 -1998 4148 3887 * 601 247 24 0 chr1 55749263 55749433 -186914920 + L1M4 LINE L1 4144 4317 -1829 218 136 91 0 chr1 55749439 55749483 -186914870 + CT-rich Low_complexity Low_complexity 3 50 0 756 83 0 0 chr1 55749486 55749582 -186914771 - HY3 scRNA scRNA -5 96 1 659 218 51 32 chr1 55749582 55749798 -186914555 + L1M4 LINE L1 4326 4545 -1601 273 208 0 0 chr1 55752230 55752307 -186912046 + (CCG)n Simple_repeat Simple_repeat 3 79 0 21 36 0 0 chr1 55754356 55754384 -186909969 + GC_rich Low_complexity Low_complexity 1 28 0 289 333 35 21 chr1 55758456 55758597 -186905756 - MIR3 SINE MIR -53 155 13 207 240 20 0 chr1 55759298 55759348 -186905005 - L2 LINE L2 0 3313 3263 833 254 187 13 chr1 55759711 55760206 -186904147 - L1ME4a LINE L1 -296 5825 5254 240 270 130 0 chr1 55760413 55760528 -186903825 - L1P LINE L1 -1131 5015 4886 324 290 82 48 chr1 55760583 55760876 -186903477 - L1ME4a LINE L1 -1331 4815 4513 405 0 0 0 chr1 55761671 55761716 -186902637 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 261 43 0 chr1 55762217 55762286 -186902067 - MIR SINE MIR -132 130 59 461 242 40 0 chr1 55762623 55762747 -186901606 + MIR SINE MIR 134 262 0 296 157 49 0 chr1 55763465 55763534 -186900819 + MIR SINE MIR 94 146 -62 390 321 24 18 chr1 55764156 55764324 -186900029 + MIR SINE MIR 9 177 -85 742 248 92 0 chr1 55764520 55764738 -186899615 + MIR SINE MIR 1 238 -24 222 364 49 0 chr1 55764914 55765057 -186899296 - L2 LINE L2 -1152 2162 2013 501 279 52 0 chr1 55765167 55765321 -186899032 + MIR SINE MIR 23 184 -78 251 330 48 0 chr1 55765456 55765559 -186898794 - L2 LINE L2 -9 3263 3156 25 31 0 0 chr1 55765610 55765642 -186898711 + AT_rich Low_complexity Low_complexity 1 32 0 224 336 86 38 chr1 55765947 55766261 -186898092 - L2 LINE L2 -354 2960 2620 2427 92 3 0 chr1 55766261 55766565 -186897788 - AluSp SINE Alu -8 305 1 224 336 86 38 chr1 55766565 55766667 -186897686 - L2 LINE L2 -694 2620 2524 826 160 15 0 chr1 55766901 55767032 -186897321 + FLAM_C SINE Alu 1 133 0 578 279 63 9 chr1 55767110 55767332 -186897021 + MIR SINE MIR 23 256 -6 585 249 50 33 chr1 55767581 55767762 -186896591 - MIR SINE MIR -65 197 14 1372 167 0 75 chr1 55768185 55768478 -186895875 - AluJo SINE Alu -10 302 32 2530 87 0 0 chr1 55768547 55768856 -186895497 + AluSx SINE Alu 1 309 -3 225 274 48 0 chr1 55768905 55768967 -186895386 + MIR SINE MIR 58 122 -86 318 189 68 14 chr1 55769072 55769146 -186895207 - MIR SINE MIR -131 131 54 350 286 118 0 chr1 55772422 55772541 -186891812 - MIR SINE MIR -28 234 102 28 29 0 0 chr1 55772878 55772913 -186891440 + AT_rich Low_complexity Low_complexity 1 35 0 264 297 55 11 chr1 55773211 55773302 -186891051 + MIR SINE MIR 153 247 -15 186 279 139 12 chr1 55774119 55774205 -186890148 - MIR SINE MIR -57 151 55 234 280 409 0 chr1 55774214 55774346 -186890007 - MIR SINE MIR -6 256 71 652 295 83 12 chr1 55774350 55774591 -186889762 + MIR SINE MIR 5 262 0 475 281 56 112 chr1 55775036 55775374 -186888979 + L3 LINE CR1 1082 1400 -177 534 254 151 49 chr1 55775459 55775664 -186888689 - MIR SINE MIR -6 256 31 741 241 12 68 chr1 55775798 55775898 -186888455 - MIR SINE MIR -1 261 157 1273 116 20 0 chr1 55775898 55776096 -186888257 - L1PB2 LINE L1 -3 6148 5947 741 241 12 68 chr1 55776096 55776244 -186888109 - MIR SINE MIR -105 157 27 211 355 43 11 chr1 55776252 55776345 -186888008 + L3 LINE CR1 1476 1571 -6 471 309 0 88 chr1 55776885 55777102 -186887251 - MIR3 SINE MIR -8 200 3 1252 153 63 0 chr1 55777132 55777354 -186886999 + MER46A DNA MER2_type 1 236 0 373 247 93 0 chr1 55777680 55777777 -186886576 - MIR SINE MIR -62 146 41 2606 43 0 0 chr1 55777928 55778231 -186886122 - AluY SINE Alu -8 303 1 311 270 109 29 chr1 55778711 55778815 -186885538 + MIR SINE MIR 36 147 -61 257 222 150 60 chr1 55779085 55779231 -186885122 + MIR SINE MIR 35 205 -57 380 335 46 25 chr1 55779970 55780167 -186884186 - MIR SINE MIR -42 220 20 2427 101 0 0 chr1 55780286 55780594 -186883759 - AluSc SINE Alu -1 308 1 2259 121 3 0 chr1 55780719 55781017 -186883336 + AluSx SINE Alu 1 299 -13 619 297 43 5 chr1 55781018 55781238 -186883115 - MIR SINE MIR -8 254 28 25 0 0 0 chr1 55781612 55781637 -186882716 + AT_rich Low_complexity Low_complexity 1 25 0 207 242 30 0 chr1 55781993 55782059 -186882294 + GA-rich Low_complexity Low_complexity 1 68 0 885 231 124 4 chr1 55782121 55782355 -186881998 - MIR SINE MIR 0 262 1 315 268 152 9 chr1 55782519 55782631 -186881722 - MIR3 SINE MIR -19 189 62 253 265 98 88 chr1 55783602 55783704 -186880649 + MIR SINE MIR 49 151 -111 305 254 66 80 chr1 55784688 55784869 -186879484 + MIR3 SINE MIR 15 186 -56 536 317 34 34 chr1 55784980 55785248 -186879105 + L2 LINE L2 2814 3081 -191 312 295 115 36 chr1 55785614 55785753 -186878600 + L2 LINE L2 3121 3270 -2 471 343 35 0 chr1 55786411 55786580 -186877773 - MIR3 SINE MIR -1 207 33 1729 117 23 8 chr1 55786638 55786894 -186877459 + AluSx SINE Alu 36 295 -17 963 146 12 36 chr1 55786894 55787059 -186877294 - FAM SINE Alu -15 170 10 395 353 85 27 chr1 55787429 55787653 -186876700 - L2 LINE L2 0 3272 3036 307 214 0 0 chr1 55787807 55787863 -186876490 + MIR SINE MIR 89 144 -118 1484 143 140 57 chr1 55788412 55788691 -186875662 + AluJb SINE Alu 1 302 -10 2245 105 3 0 chr1 55788738 55789024 -186875329 + AluSp SINE Alu 1 287 -26 284 324 116 8 chr1 55789098 55789237 -186875116 + MIR SINE MIR 25 171 -62 709 273 120 9 chr1 55789544 55789760 -186874593 - MIR SINE MIR -1 261 22 2033 163 0 7 chr1 55789773 55790080 -186874273 - AluJb SINE Alu -7 305 1 387 339 58 45 chr1 55790266 55790573 -186873780 + L2 LINE L2 2377 2687 -627 259 329 86 13 chr1 55790573 55790725 -186873628 + MIR SINE MIR 1 163 -99 208 258 197 0 chr1 55790861 55790927 -186873426 + L2 LINE L2 3232 3310 -3 1405 146 0 12 chr1 55791115 55791362 -186872991 - MER82 DNA MER2_type -217 436 193 336 127 0 0 chr1 55791382 55791437 -186872916 + (TG)n Simple_repeat Simple_repeat 2 56 0 1541 183 43 0 chr1 55791449 55791609 -186872744 - AluJb SINE Alu -21 291 112 246 62 0 0 chr1 55791609 55791641 -186872712 + (TG)n Simple_repeat Simple_repeat 1 32 0 1541 183 43 0 chr1 55791641 55791759 -186872594 - AluJb SINE Alu -200 112 1 985 181 15 35 chr1 55791759 55791958 -186872395 - MER82 DNA MER2_type -458 195 1 291 374 19 0 chr1 55792270 55792377 -186871976 - L2 LINE L2 -8 3264 3156 269 147 64 0 chr1 55792799 55792908 -186871445 + (TA)n Simple_repeat Simple_repeat 1 116 0 768 192 7 0 chr1 55792912 55793058 -186871295 + MER68 LTR ERV1 381 527 -35 186 230 330 10 chr1 55793071 55793171 -186871182 - MIR SINE MIR -50 212 81 3020 177 43 4 chr1 55793735 55794272 -186870081 + MER68 LTR ERV1 5 562 0 466 330 99 9 chr1 55794297 55794518 -186869835 + MIR SINE MIR 16 256 -6 907 125 15 22 chr1 55794977 55795113 -186869240 - AluJo SINE Alu -177 135 1 309 278 57 0 chr1 55795114 55795228 -186869125 - MIR SINE MIR -67 141 73 407 333 48 16 chr1 55795508 55795697 -186868656 - MIR SINE MIR -34 228 34 326 284 53 11 chr1 55795932 55796027 -186868326 + MIR SINE MIR 53 151 -111 365 293 95 0 chr1 55796069 55796185 -186868168 + MIR SINE MIR 108 234 -28 2241 262 88 45 chr1 55796265 55797388 -186866965 - L2 LINE L2 0 3313 2136 266 111 0 0 chr1 55797387 55797423 -186866930 - L2 LINE L2 -17 3255 3220 * 2216 107 0 3 chr1 55798128 55798419 -186865934 - AluSc SINE Alu -19 290 1 508 252 67 15 chr1 55798486 55798621 -186865732 + MIR SINE MIR 6 147 -115 604 123 35 112 chr1 55798622 55798735 -186865618 + L1MA7 LINE L1 6129 6227 -64 1851 185 0 0 chr1 55798735 55799039 -186865314 + AluJb SINE Alu 3 306 0 604 123 35 112 chr1 55799039 55799094 -186865259 + L1MA7 LINE L1 6227 6285 -6 2095 122 0 17 chr1 55799109 55799266 -186865087 - AluSx SINE Alu -22 290 139 2383 87 0 3 chr1 55799266 55799565 -186864788 - AluSg SINE Alu -12 298 1 2095 122 0 17 chr1 55799565 55799702 -186864651 - AluSx SINE Alu -173 139 1 26 64 0 0 chr1 55799705 55799752 -186864601 + AT_rich Low_complexity Low_complexity 1 47 0 295 278 37 46 chr1 55800030 55800138 -186864215 + MIR SINE MIR 38 144 -64 516 338 62 27 chr1 55800241 55800611 -186863742 - L2 LINE L2 -416 2898 2516 303 338 62 31 chr1 55801133 55801293 -186863060 + MIR3 SINE MIR 42 206 -2 356 297 102 57 chr1 55801443 55801660 -186862693 - MIR SINE MIR -37 225 4 258 319 44 77 chr1 55801749 55801931 -186862422 + L2 LINE L2 3097 3272 0 254 390 0 0 chr1 55802044 55802126 -186862227 + L2 LINE L2 3153 3234 -38 260 294 7 44 chr1 55802692 55802828 -186861525 + GA-rich Low_complexity Low_complexity 5 135 0 510 17 0 0 chr1 55803171 55803230 -186861123 + (CA)n Simple_repeat Simple_repeat 2 60 0 194 242 76 30 chr1 55803882 55803948 -186860405 - L2 LINE L2 -7 3265 3197 22 70 0 0 chr1 55804113 55804156 -186860197 + AT_rich Low_complexity Low_complexity 1 43 0 1002 298 253 47 chr1 55804865 55805227 -186859126 - L3 LINE CR1 -124 1453 1167 658 63 32 0 chr1 55805227 55805322 -186859031 - L1PB1 LINE L1 -1 6150 6053 1002 298 253 47 chr1 55805322 55805910 -186858443 - L3 LINE CR1 -410 1167 307 586 158 115 6 chr1 55806942 55807095 -186857258 + L1MB4 LINE L1 6009 6178 0 299 246 29 0 chr1 55807133 55807202 -186857151 + MIR SINE MIR 32 102 -106 223 323 10 62 chr1 55808048 55808144 -186856209 + MIR SINE MIR 157 247 -15 342 291 0 0 chr1 55808174 55808260 -186856093 - MIR3 SINE MIR -12 196 111 309 224 134 45 chr1 55808526 55808660 -186855693 + L2 LINE L2 3168 3313 0 248 282 0 14 chr1 55808672 55808743 -186855610 + MIR SINE MIR 185 254 -8 2276 110 3 0 chr1 55808970 55809269 -186855084 - AluSx SINE Alu -12 300 1 643 110 46 0 chr1 55809444 55809553 -186854800 - L1MB4 LINE L1 -40 6140 6027 540 262 162 0 chr1 55809667 55809858 -186854495 - L1ME3A LINE L1 0 6170 5949 185 328 248 8 chr1 55809884 55810009 -186854344 + MIR SINE MIR 15 169 -93 1059 123 67 0 chr1 55810032 55810211 -186854142 - L1P3 LINE L1 -5682 193 3 589 258 0 31 chr1 55811278 55811437 -186852916 - L2 LINE L2 0 3313 3160 584 165 0 0 chr1 55811448 55811545 -186852808 + Tigger3b DNA MER2_type 6 102 -1129 * 4834 124 72 18 chr1 55811543 55812451 -186851902 + Tigger3b DNA MER2_type 274 1230 -1 533 264 157 50 chr1 55812451 55812769 -186851584 - L2 LINE L2 -157 3156 2805 3041 192 68 42 chr1 55812812 55814343 -186850010 - L1ME1 LINE L1 -8 6158 4590 1951 218 97 58 chr1 55814343 55814944 -186849409 - L2 LINE L2 -523 2791 2168 231 316 31 41 chr1 55815295 55815393 -186848960 + MIR SINE MIR 150 246 -16 203 255 0 0 chr1 55815394 55815441 -186848912 + (ATG)n Simple_repeat Simple_repeat 1 47 0 2176 31 0 0 chr1 55815667 55815923 -186848430 + L1PA5 LINE L1 5898 6153 -1 733 188 0 23 chr1 55815938 55816066 -186848287 - FLAM_A SINE Alu -8 125 1 219 184 0 158 chr1 55816096 55816146 -186848207 + MIR SINE MIR 119 155 -107 1491 138 160 88 chr1 55816146 55816187 -186848166 - MSTA LTR MaLR 0 428 391 2415 73 6 25 chr1 55816187 55816503 -186847850 + AluY SINE Alu 1 310 -1 1491 138 160 88 chr1 55816503 55816860 -186847493 - MSTA LTR MaLR -37 391 1 219 184 0 158 chr1 55816860 55816885 -186847468 + MIR SINE MIR 155 182 -80 186 103 0 0 chr1 55817239 55817268 -186847085 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 359 307 20 60 chr1 55817469 55817619 -186846734 + L2 LINE L2 3129 3272 0 333 305 11 11 chr1 55818648 55818743 -186845610 + MIR SINE MIR 38 132 -76 216 331 88 29 chr1 55819539 55819675 -186844678 + MIR SINE MIR 105 248 -14 253 276 184 20 chr1 55820379 55820477 -186843876 + L2 LINE L2 3159 3272 0 2000 98 0 72 chr1 55820884 55821191 -186843162 + AluSx SINE Alu 1 285 -27 1072 22 14 7 chr1 55821191 55821330 -186843023 + (GGAA)n Simple_repeat Simple_repeat 3 142 0 242 140 0 20 chr1 55821521 55821571 -186842782 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 211 308 53 45 chr1 55822073 55822206 -186842147 + L2 LINE L2 3161 3294 -19 333 217 84 24 chr1 55822206 55822289 -186842064 + MER5B DNA MER1_type 1 88 -90 666 281 95 0 chr1 55822770 55822970 -186841383 + MIR SINE MIR 14 234 -28 195 42 0 0 chr1 55823138 55823162 -186841191 + (CACAC)n Simple_repeat Simple_repeat 5 28 0 276 203 125 0 chr1 55823457 55823521 -186840832 + MER116 DNA Mariner 1 72 -8 2242 116 0 0 chr1 55823838 55824139 -186840214 - AluSx SINE Alu -11 301 1 388 342 59 20 chr1 55824331 55824533 -186839820 + L2 LINE L2 3100 3309 -4 309 319 25 69 chr1 55825422 55825626 -186838727 + L2 LINE L2 3119 3313 0 5651 110 17 1 chr1 55825787 55826653 -186837700 - L1MA2 LINE L1 -6 6298 5419 22 0 0 0 chr1 55826794 55826816 -186837537 + AT_rich Low_complexity Low_complexity 1 22 0 344 249 24 77 chr1 55827125 55827294 -186837059 + L1ME1 LINE L1 113 272 -5933 1955 144 14 0 chr1 55827419 55827711 -186836642 + AluSq SINE Alu 3 298 -15 1369 270 45 54 chr1 55827716 55828347 -186836006 + L1ME1 LINE L1 1210 1836 -4560 2330 85 0 7 chr1 55828347 55828652 -186835701 - AluSg1 SINE Alu -4 305 3 1369 270 45 54 chr1 55828652 55828683 -186835670 + L1ME1 LINE L1 1836 1866 -4530 2898 210 38 26 chr1 55828683 55829396 -186834957 + L1MB3 LINE L1 4603 5327 -819 2214 96 0 0 chr1 55829396 55829678 -186834675 + AluSx SINE Alu 23 304 -8 2898 210 38 26 chr1 55829678 55829730 -186834623 + L1MB3 LINE L1 5327 5377 -769 1618 178 57 0 chr1 55829727 55830042 -186834311 + L1MB3 LINE L1 5687 6019 -164 * 915 240 7 68 chr1 55830038 55830317 -186834036 - L1M4 LINE L1 -1998 4148 3887 * 584 247 24 0 chr1 55830345 55830515 -186833838 + L1ME1 LINE L1 4213 4386 -1829 218 136 91 0 chr1 55830521 55830565 -186833788 + CT-rich Low_complexity Low_complexity 3 50 0 740 83 0 0 chr1 55830568 55830664 -186833689 - HY3 scRNA scRNA -5 96 1 2722 203 61 34 chr1 55830664 55831513 -186832840 + L1ME1 LINE L1 4395 5266 -949 363 208 0 0 chr1 55831519 55831591 -186832762 + L1MA3 LINE L1 6233 6304 -1 2189 196 23 51 chr1 55831911 55832189 -186832164 + L1ME1 LINE L1 5273 5557 -678 2361 87 10 0 chr1 55832189 55832487 -186831866 + AluY SINE Alu 1 301 -10 2189 196 23 51 chr1 55832487 55832802 -186831551 + L1ME1 LINE L1 5557 5846 -389 1562 163 3 78 chr1 55833625 55833945 -186830408 - AluJo SINE Alu -16 296 1 402 247 0 0 chr1 55834027 55834116 -186830237 + L1MB5 LINE L1 6075 6163 -11 1601 169 30 20 chr1 55834145 55834440 -186829913 + AluJo SINE Alu 1 298 -14 1297 246 28 36 chr1 55834471 55834862 -186829491 + L1ME1 LINE L1 5841 6228 -7 799 269 20 17 chr1 55834871 55835165 -186829188 + L1MEd LINE L1 925 1219 -4900 771 237 36 12 chr1 55835180 55835429 -186828924 + L1MEd LINE L1 965 1219 -4900 477 238 134 43 chr1 55835644 55835808 -186828545 + MER5A DNA MER1_type 11 189 0 1150 223 0 18 chr1 55836382 55836602 -186827751 + MER58A DNA MER1_type 5 220 -4 421 331 101 47 chr1 55837085 55837472 -186826881 + L2 LINE L2 2806 3213 -59 205 239 75 15 chr1 55837498 55837565 -186826788 - MIR SINE MIR -16 246 176 1408 177 100 15 chr1 55838264 55838535 -186825818 + AluJo SINE Alu 2 295 -17 3893 159 49 32 chr1 55838735 55839507 -186824846 + L1MB5 LINE L1 5327 6114 -60 2200 112 3 10 chr1 55839507 55839810 -186824543 - AluSx SINE Alu -11 301 1 3893 159 49 32 chr1 55839810 55839863 -186824490 + L1MB5 LINE L1 6114 6165 -9 465 75 15 47 chr1 55839909 55840001 -186824352 + L1MB7 LINE L1 5745 5836 -325 1684 198 0 0 chr1 55840136 55840409 -186823944 + AluJb SINE Alu 1 273 -39 347 257 76 9 chr1 55840546 55840651 -186823702 + MIR SINE MIR 1 112 -150 2135 114 10 3 chr1 55840692 55840991 -186823362 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr1 55842022 55842052 -186822301 + AT_rich Low_complexity Low_complexity 1 30 0 6854 51 15 2 chr1 55842067 55843679 -186820674 - L1PA7 LINE L1 -6 6148 4516 1977 128 0 36 chr1 55844004 55844309 -186820044 + AluSx SINE Alu 1 294 -18 401 238 60 33 chr1 55844549 55844708 -186819645 - MIR SINE MIR -68 140 16 224 417 83 19 chr1 55844960 55845116 -186819237 + L2 LINE L2 3089 3254 -18 186 333 69 11 chr1 55845747 55845834 -186818519 + L2 LINE L2 2582 2673 -641 278 286 52 0 chr1 55845845 55845922 -186818431 - L2 LINE L2 -7 3265 3185 377 351 119 0 chr1 55845997 55846182 -186818171 - MIR SINE MIR -44 218 12 466 256 16 62 chr1 55846185 55846314 -186818039 - MER5A DNA MER1_type 0 189 67 890 248 110 5 chr1 55846782 55847000 -186817353 - MIR SINE MIR -10 252 12 393 243 68 19 chr1 55848124 55848227 -186816126 + MIR3 SINE MIR 74 181 -27 284 114 0 0 chr1 55848316 55848360 -186815993 - MIR SINE MIR -98 164 121 263 183 28 70 chr1 55848355 55848426 -186815927 + MER5A DNA MER1_type 99 166 -23 * 313 253 81 11 chr1 55848368 55848455 -186815898 - MER5A DNA MER1_type -91 98 6 351 217 65 0 chr1 55848535 55848627 -186815726 + MIR SINE MIR 76 173 -89 2036 238 48 51 chr1 55848784 55849242 -186815111 - L1ME1 LINE L1 -23 6143 5686 2446 79 0 0 chr1 55849242 55849546 -186814807 - AluY SINE Alu -7 304 1 2036 238 48 51 chr1 55849546 55849730 -186814623 - L1ME1 LINE L1 -480 5686 5503 2068 98 11 0 chr1 55849856 55850133 -186814220 + AluSg SINE Alu 1 280 -30 998 118 6 0 chr1 55850135 55850296 -186814057 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 181 338 40 14 chr1 55850788 55850862 -186813491 + L2 LINE L2 3194 3269 -3 1960 126 10 3 chr1 55851371 55851665 -186812688 + AluJb SINE Alu 1 296 -16 665 157 67 0 chr1 55851853 55851987 -186812366 - L1MA8 LINE L1 -5 6286 6144 497 277 76 38 chr1 55853099 55853283 -186811070 + MIR SINE MIR 46 236 -26 4234 175 32 27 chr1 55853554 55854544 -186809809 - L1MB4 LINE L1 0 6180 5183 * 4996 125 19 13 chr1 55854525 55855699 -186808654 - L1PA13 LINE L1 -335 5828 4655 2174 126 0 0 chr1 55855699 55855992 -186808361 - AluSx SINE Alu -19 293 1 4996 125 19 13 chr1 55855992 55856159 -186808194 - L1PA13 LINE L1 -1508 4655 4490 1731 220 36 13 chr1 55856157 55856607 -186807746 - L1MB4 LINE L1 -1786 4360 3901 * 568 183 104 9 chr1 55856974 55857089 -186807264 - FLAM_C SINE Alu -17 126 1 23 0 0 0 chr1 55857094 55857117 -186807236 + AT_rich Low_complexity Low_complexity 1 23 0 948 118 0 0 chr1 55857120 55857247 -186807106 + FLAM_C SINE Alu 1 127 -16 24 0 0 0 chr1 55857247 55857271 -186807082 + AT_rich Low_complexity Low_complexity 1 24 0 695 194 0 22 chr1 55857271 55857410 -186806943 - AluJo SINE Alu -176 136 1 2449 174 12 25 chr1 55857410 55857665 -186806688 - L1M4 LINE L1 -444 5734 5477 2030 128 7 7 chr1 55857665 55857962 -186806391 - AluSx SINE Alu -15 297 1 2449 174 12 25 chr1 55857962 55858282 -186806071 - L1M4 LINE L1 -701 5477 5171 663 48 0 0 chr1 55858618 55858701 -186805652 + (TC)n Simple_repeat Simple_repeat 2 84 0 1805 134 36 18 chr1 55858701 55858978 -186805375 - AluJb SINE Alu -30 282 1 421 179 0 0 chr1 55859463 55859530 -186804823 + Tigger2 DNA MER2_type 1 67 -2651 * 2481 158 39 5 chr1 55859522 55859953 -186804400 + Tigger2 DNA MER2_type 2273 2718 0 440 276 10 0 chr1 55860591 55860689 -186803664 + L2 LINE L2 3215 3313 0 519 113 0 0 chr1 55861049 55861129 -186803224 + (TG)n Simple_repeat Simple_repeat 2 81 0 2727 13 0 0 chr1 55861130 55861428 -186802925 - AluYa5 SINE Alu -13 298 1 2476 65 36 0 chr1 55861572 55861909 -186802444 + L1MA1 LINE L1 5953 6301 -1 22 0 0 0 chr1 55863901 55863923 -186800430 + AT_rich Low_complexity Low_complexity 1 22 0 1869 162 0 19 chr1 55863923 55864237 -186800116 - AluJo SINE Alu -4 308 1 298 254 0 0 chr1 55864246 55864305 -186800048 - AluJb SINE Alu -23 279 221 1290 115 16 6 chr1 55864305 55864488 -186799865 - AluJb SINE Alu -124 188 4 277 346 50 10 chr1 55864569 55864670 -186799683 - L2 LINE L2 0 3272 3168 333 238 38 12 chr1 55865026 55865106 -186799247 + MIR SINE MIR 73 154 -108 281 293 170 0 chr1 55865178 55865284 -186799069 + LTR33A LTR ERVL 72 195 -328 538 251 59 79 chr1 55865329 55865413 -186798940 + LTR33 LTR ERVL 323 407 -114 1980 124 25 7 chr1 55865413 55865695 -186798658 - AluSg SINE Alu -23 287 1 538 251 59 79 chr1 55865695 55865813 -186798540 + LTR33 LTR ERVL 407 521 0 338 278 52 0 chr1 55865815 55865912 -186798441 + MIR SINE MIR 161 262 0 448 259 90 67 chr1 55866903 55867160 -186797193 - MIR SINE MIR -2 260 2 216 97 0 0 chr1 55867903 55867934 -186796419 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 574 168 168 0 chr1 55868102 55868209 -186796144 - FLAM_A SINE Alu -4 129 5 3401 138 58 23 chr1 55868550 55869238 -186795115 - Charlie1a DNA MER1_type 0 1455 744 2096 194 80 50 chr1 55869248 55869784 -186794569 - Charlie1a DNA MER1_type -902 553 2 2194 109 0 10 chr1 55871088 55871392 -186792961 - AluSg1 SINE Alu -7 302 2 213 171 29 14 chr1 55872845 55872915 -186791438 + GA-rich Low_complexity Low_complexity 2 72 0 318 286 45 45 chr1 55874585 55874718 -186789635 + MIR SINE MIR 127 259 -3 866 181 125 87 chr1 55875041 55875329 -186789024 - MSTB2 LTR MaLR -144 313 15 326 289 46 72 chr1 55875413 55875607 -186788746 - MER5A DNA MER1_type 0 189 1 380 270 0 30 chr1 55875648 55875748 -186788605 + MARNA DNA Mariner 398 494 -92 699 332 5 5 chr1 55875864 55876087 -186788266 - L2 LINE L2 -227 3086 2864 2061 108 22 7 chr1 55876411 55876688 -186787665 - AluSx SINE Alu -27 285 5 201 74 0 0 chr1 55876705 55876732 -186787621 + (A)n Simple_repeat Simple_repeat 1 27 0 764 234 156 64 chr1 55876732 55877004 -186787349 + L1MC4a LINE L1 5443 5689 -2119 1723 167 7 17 chr1 55877004 55877291 -186787062 + AluJo SINE Alu 3 286 -26 764 234 156 64 chr1 55877291 55877484 -186786869 + L1MC4a LINE L1 5689 5962 -1846 2260 113 0 0 chr1 55877484 55877785 -186786568 - AluSg SINE Alu -9 301 1 764 234 156 64 chr1 55877785 55877832 -186786521 + L1MC4a LINE L1 5962 6003 -1805 1437 168 4 20 chr1 55878062 55878312 -186786041 - AluJb SINE Alu -64 248 3 2345 78 3 3 chr1 55878539 55878834 -186785519 - AluSp SINE Alu -17 296 2 328 247 78 0 chr1 55879087 55879164 -186785189 - L3 LINE CR1 -6 1571 1489 442 245 214 0 chr1 55879929 55880088 -186784265 + MIR SINE MIR 2 194 -68 1552 143 49 58 chr1 55880419 55880619 -186783734 - AluJo SINE Alu -7 305 108 2146 112 10 0 chr1 55880619 55880922 -186783431 + AluSg SINE Alu 1 306 -4 1552 143 49 58 chr1 55880922 55881029 -186783324 - AluJo SINE Alu -204 108 1 2419 75 3 3 chr1 55881191 55881498 -186782855 + AluY SINE Alu 1 307 -4 24 32 0 0 chr1 55881836 55881867 -186782486 + AT_rich Low_complexity Low_complexity 1 31 0 579 317 176 18 chr1 55882603 55883001 -186781352 + L3 LINE CR1 208 668 -909 399 274 104 78 chr1 55883027 55883134 -186781219 - MIR SINE MIR -17 245 142 2226 116 0 7 chr1 55883134 55883436 -186780917 + AluSx SINE Alu 1 300 -12 399 274 104 78 chr1 55883436 55883558 -186780795 - MIR SINE MIR -120 142 10 195 306 14 76 chr1 55883608 55883752 -186780601 - L2 LINE L2 -65 3248 3114 721 333 127 39 chr1 55883836 55884481 -186779872 - L2 LINE L2 -1889 1425 724 366 262 19 28 chr1 55884592 55884699 -186779654 + L3 LINE CR1 846 951 -626 561 333 67 37 chr1 55884783 55885185 -186779168 + L3 LINE CR1 1157 1570 -7 358 222 35 123 chr1 55885395 55885486 -186778867 + MIR SINE MIR 106 203 -59 207 0 0 0 chr1 55885486 55885509 -186778844 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 252 0 0 0 chr1 55885508 55885536 -186778817 + (GA)n Simple_repeat Simple_repeat 2 29 0 358 222 35 123 chr1 55885509 55885615 -186778738 + MIR SINE MIR 203 261 -1 1242 119 33 38 chr1 55886124 55886334 -186778019 + AluJb SINE Alu 66 274 -38 228 200 0 0 chr1 55886334 55886414 -186777939 + (CA)n Simple_repeat Simple_repeat 2 81 0 4598 102 66 118 chr1 55886438 55887174 -186777179 + L1PB3 LINE L1 5155 5858 -296 1690 48 0 10 chr1 55887174 55887383 -186776970 + AluY SINE Alu 101 307 -4 4598 102 66 118 chr1 55887383 55887666 -186776687 + L1PB3 LINE L1 5858 6154 0 1811 167 0 7 chr1 55887673 55888016 -186776337 + AluJb SINE Alu 1 341 0 1766 146 52 0 chr1 55889027 55889318 -186775035 - AluSx SINE Alu 0 305 1 2169 118 0 0 chr1 55890088 55890384 -186773969 + AluSx SINE Alu 1 296 -16 2140 101 4 0 chr1 55892667 55892945 -186771408 + AluSg SINE Alu 1 279 -31 453 62 0 0 chr1 55892954 55893019 -186771334 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 321 326 68 41 chr1 55893793 55893940 -186770413 + L2 LINE L2 3121 3271 -1 2017 123 43 0 chr1 55893976 55894278 -186770075 - MER2 DNA MER2_type -10 335 21 936 150 36 24 chr1 55894398 55894565 -186769788 + FRAM SINE Alu 1 163 -13 715 112 0 63 chr1 55896103 55896246 -186768107 - L1PA14 LINE L1 -3 6158 6025 448 281 87 42 chr1 55899662 55899883 -186764470 - MIR SINE MIR -21 241 19 362 247 22 11 chr1 55900074 55900163 -186764190 - L2 LINE L2 0 3272 3183 410 319 123 20 chr1 55900256 55900460 -186763893 + L2 LINE L2 2986 3210 -62 247 268 20 18 chr1 55902468 55902617 -186761736 + MIR SINE MIR 44 260 -2 203 176 0 0 chr1 55902904 55902938 -186761415 - MIR3 SINE MIR -3 205 172 611 246 117 11 chr1 55903290 55903571 -186760782 - L1MC4 LINE L1 -43 7999 7689 375 262 31 0 chr1 55903718 55903815 -186760538 + MIR SINE MIR 16 120 -92 753 118 0 0 chr1 55903994 55904096 -186760257 - FLAM_C SINE Alu -18 125 24 2199 103 27 0 chr1 55904219 55904519 -186759834 - AluSq SINE Alu -5 308 1 186 71 0 0 chr1 55904933 55904961 -186759392 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1998 129 11 3 chr1 55904971 55905257 -186759096 + AluSx SINE Alu 6 293 -19 31 26 0 0 chr1 55905820 55905858 -186758495 + AT_rich Low_complexity Low_complexity 1 38 0 2694 48 0 0 chr1 55906019 55906328 -186758025 - AluY SINE Alu -2 309 1 22 70 0 0 chr1 55906702 55906745 -186757608 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr1 55907074 55907101 -186757252 + AT_rich Low_complexity Low_complexity 1 27 0 239 356 10 0 chr1 55907162 55907263 -186757090 + MARNA DNA Mariner 155 256 -330 347 292 91 19 chr1 55907290 55907444 -186756909 - MIR SINE MIR -41 221 57 1508 180 0 79 chr1 55907782 55908087 -186756266 - AluJb SINE Alu -31 281 1 198 319 137 87 chr1 55908134 55908363 -186755990 + L2 LINE L2 2804 3059 -213 2288 109 0 0 chr1 55908363 55908675 -186755678 + AluSx SINE Alu 1 312 0 198 319 137 87 chr1 55908675 55908802 -186755551 + L2 LINE L2 3059 3178 -94 576 123 0 0 chr1 55909057 55909138 -186755215 - AluS SINE Alu -232 81 1 1116 111 7 0 chr1 55910138 55910291 -186754062 - AluSq SINE Alu -10 303 150 1540 104 5 0 chr1 55910291 55910492 -186753861 - AluSq SINE Alu -111 202 1 2171 87 3 45 chr1 55911220 55911531 -186752822 + AluSx SINE Alu 1 298 -14 2094 124 0 0 chr1 55911771 55912092 -186752261 + AluSx SINE Alu 1 321 0 1777 189 0 3 chr1 55912101 55912397 -186751956 + AluJb SINE Alu 3 297 -15 717 236 32 0 chr1 55912586 55912743 -186751610 + AluJb SINE Alu 137 298 -14 269 219 41 7 chr1 55914412 55914558 -186749795 + GA-rich Low_complexity Low_complexity 4 154 0 2112 114 24 0 chr1 55915663 55915960 -186748393 - AluSg SINE Alu -6 304 1 1950 214 52 48 chr1 55917604 55917724 -186746629 + Charlie1a DNA MER1_type 3 121 -2640 2158 123 3 0 chr1 55917724 55918024 -186746329 - AluSx SINE Alu -11 301 1 1950 214 52 48 chr1 55918024 55918440 -186745913 + Charlie1a DNA MER1_type 121 541 -914 1135 158 115 19 chr1 55918443 55918652 -186745701 - MER46A DNA MER2_type -7 229 1 3748 157 39 103 chr1 55918676 55919649 -186744704 + Charlie1a DNA MER1_type 545 1455 0 1867 112 32 28 chr1 55920004 55920289 -186744064 + AluSq SINE Alu 1 286 -27 186 103 0 0 chr1 55920291 55920320 -186744033 + (TA)n Simple_repeat Simple_repeat 2 30 0 326 286 0 22 chr1 55920331 55920422 -186743931 - L1MC4 LINE L1 -1340 6702 6614 291 325 68 17 chr1 55920558 55920675 -186743678 + MIR3 SINE MIR 76 198 -10 243 294 12 0 chr1 55920982 55921067 -186743286 + L1ME2 LINE L1 6078 6325 -9 2230 117 3 0 chr1 55921114 55921412 -186742941 - AluSx SINE Alu -13 299 1 697 309 27 0 chr1 55921482 55921702 -186742651 - MIR SINE MIR -1 261 36 248 333 122 0 chr1 55921846 55921993 -186742360 - MIR SINE MIR -49 213 49 390 322 59 0 chr1 55922987 55923105 -186741248 - MIR3 SINE MIR -53 155 31 1582 156 37 83 chr1 55923109 55923435 -186740918 - AluJb SINE Alu -1 311 1 308 306 66 16 chr1 55924512 55924633 -186739720 + MIR SINE MIR 25 151 -111 2557 68 0 3 chr1 55925100 55925411 -186738942 - AluSp SINE Alu -3 310 1 396 322 95 0 chr1 55925874 55926028 -186738325 + MIR3 SINE MIR 20 187 -21 3040 154 2 6 chr1 55926492 55926980 -186737373 - MER66B LTR ERV1 0 486 1 538 260 87 12 chr1 55927379 55927552 -186736801 + MIR SINE MIR 8 193 -69 287 291 0 47 chr1 55927672 55927758 -186736595 - L2 LINE L2 0 3272 3191 1680 180 21 11 chr1 55928006 55928289 -186736064 - AluJo SINE Alu -23 289 4 21 82 0 0 chr1 55932185 55932234 -186732119 + AT_rich Low_complexity Low_complexity 1 49 0 223 151 0 38 chr1 55932401 55932427 -186731926 + (CAAA)n Simple_repeat Simple_repeat 2 27 -25 2228 121 0 0 chr1 55932427 55932724 -186731629 + AluSc SINE Alu 1 297 -12 223 151 0 38 chr1 55932724 55932750 -186731603 + (CAAA)n Simple_repeat Simple_repeat 27 52 0 2396 93 3 0 chr1 55933168 55933470 -186730883 + AluSp SINE Alu 1 303 -10 10002 203 96 49 chr1 55933528 55935292 -186729061 - L1PA16 LINE L1 -3 7601 5921 2246 131 0 0 chr1 55935292 55935589 -186728764 - AluSx SINE Alu -13 299 3 10002 203 96 49 chr1 55935589 55937040 -186727313 - L1PA16 LINE L1 -1683 5921 4540 1058 75 0 0 chr1 55937040 55937173 -186727180 - AluSq/x SINE Alu -180 133 1 10002 203 96 49 chr1 55937173 55937363 -186726990 - L1PA16 LINE L1 -3064 4540 4360 2168 112 0 26 chr1 55937363 55937667 -186726686 - AluSx SINE Alu -16 296 1 10002 203 96 49 chr1 55937667 55938520 -186725833 - L1PA16 LINE L1 -3244 4360 3549 2413 94 0 0 chr1 55938520 55938817 -186725536 - AluSg SINE Alu -13 297 1 10002 203 96 49 chr1 55938817 55939274 -186725079 - L1PA16 LINE L1 -4055 3549 2478 304 282 9 9 chr1 55939287 55939397 -186724956 - L1PA16 LINE L1 -5237 2344 2235 287 312 0 0 chr1 55939664 55939757 -186724596 - L1PA16 LINE L1 -5402 2179 2087 2194 119 6 6 chr1 55939998 55940310 -186724043 - AluSx SINE Alu 0 312 1 653 351 31 52 chr1 55940340 55940494 -186723859 - L1PA16 LINE L1 -6316 1258 1102 2387 97 3 0 chr1 55940494 55940805 -186723548 + AluSx SINE Alu 1 312 0 653 351 31 52 chr1 55940805 55941129 -186723224 - L1PA16 LINE L1 -6472 1102 790 2139 116 3 25 chr1 55941896 55942215 -186722138 + AluSx SINE Alu 1 312 0 1906 153 16 3 chr1 55942270 55942641 -186721712 + AluJb SINE Alu 1 375 0 189 0 0 0 chr1 55992775 55992796 -186671557 + (A)n Simple_repeat Simple_repeat 1 21 0 2256 95 10 0 chr1 55993107 55993403 -186670950 - AluSp SINE Alu -14 299 1 2230 117 0 7 chr1 55993510 55993809 -186670544 - AluSx SINE Alu -15 297 1 694 144 0 0 chr1 55994001 55994105 -186670248 - AluSc SINE Alu -9 300 197 925 109 15 0 chr1 55994105 55994242 -186670111 - AluY SINE Alu -172 139 1 527 263 0 25 chr1 55994596 55994714 -186669639 - AluJb SINE Alu -78 234 120 210 341 47 0 chr1 55995743 55995828 -186668525 + MIR SINE MIR 31 119 -143 260 242 16 0 chr1 55995829 55995891 -186668462 - L2 LINE L2 0 3313 3251 2340 78 0 7 chr1 55995967 55996260 -186668093 - AluSc SINE Alu -18 291 1 2182 121 3 0 chr1 55996268 55996565 -186667788 - AluSg SINE Alu -12 298 1 2386 96 10 0 chr1 55996821 55997122 -186667231 - AluSg SINE Alu -6 304 1 317 189 349 0 chr1 55997264 55997370 -186666983 - MIR SINE MIR 0 262 120 2103 136 0 0 chr1 55997732 55998027 -186666326 + AluSx SINE Alu 2 296 -16 1876 142 20 0 chr1 55998241 55998536 -186665817 + AluJb SINE Alu 5 305 -7 929 106 0 33 chr1 55998627 55998778 -186665575 - AluSg/x SINE Alu -10 300 155 4760 220 16 35 chr1 55998878 55999596 -186664757 - L1PA15-16 LINE L1 -3953 3631 2942 2190 128 0 0 chr1 55999596 55999893 -186664460 - AluSg SINE Alu -13 297 1 4760 220 16 35 chr1 55999893 56000350 -186664003 - L1PA15-16 LINE L1 -4642 2942 2478 342 282 9 9 chr1 56000363 56000473 -186663880 - L1PA15-16 LINE L1 -5237 2344 2235 315 312 0 0 chr1 56000740 56000833 -186663520 - L1PA15-16 LINE L1 -5402 2179 2087 2083 132 10 6 chr1 56001074 56001385 -186662968 - AluSx SINE Alu 0 312 1 1931 85 0 0 chr1 56001683 56001919 -186662434 - AluSq SINE Alu -76 237 2 1072 179 0 43 chr1 56001920 56002127 -186662226 + AluJo SINE Alu 103 300 -12 477 50 0 0 chr1 56002142 56002202 -186662151 + (CA)n Simple_repeat Simple_repeat 2 61 0 242 273 91 11 chr1 56003122 56003210 -186661143 - MIR SINE MIR -84 124 30 2145 128 0 0 chr1 56003337 56003627 -186660726 - AluSx SINE Alu -22 290 1 2064 117 0 14 chr1 56003844 56004135 -186660218 + AluSg SINE Alu 1 287 -23 1119 68 0 0 chr1 56004287 56004420 -186659933 + AluY SINE Alu 1 133 -178 2441 92 0 0 chr1 56004420 56004725 -186659628 + AluY SINE Alu 1 305 -6 632 306 68 65 chr1 56004901 56005284 -186659069 + L2 LINE L2 2925 3308 -5 1017 331 70 22 chr1 56005334 56005489 -186658864 - L2 LINE L2 -4 3309 3163 2004 153 36 127 chr1 56005489 56005987 -186658366 + MLT2A2 LTR ERVL 1 453 0 1017 331 70 22 chr1 56005987 56006381 -186657972 - L2 LINE L2 -150 3163 2740 895 103 26 0 chr1 56006381 56006497 -186657856 + AluSc SINE Alu 1 119 -190 23 33 0 0 chr1 56006637 56006667 -186657686 + AT_rich Low_complexity Low_complexity 1 30 0 940 195 31 15 chr1 56007553 56007748 -186656605 - Tigger7 DNA MER2_type 0 2487 2290 3891 166 40 14 chr1 56007756 56008457 -186655896 - Tigger7 DNA MER2_type -1768 719 1 1696 104 154 0 chr1 56008563 56008822 -186655531 + AluSg1 SINE Alu 1 299 -10 2328 76 7 0 chr1 56009583 56009874 -186654479 - AluSx SINE Alu -19 293 1 2090 203 47 6 chr1 56009874 56010346 -186654007 - L1M2 LINE L1 -4031 2818 2328 1061 253 65 30 chr1 56010569 56010940 -186653413 - L1M4 LINE L1 -1082 5064 4681 1834 151 3 60 chr1 56010941 56011272 -186653081 + AluSx SINE Alu 1 312 0 1943 107 19 55 chr1 56011274 56011584 -186652769 + AluSq SINE Alu 1 299 -14 2407 107 0 0 chr1 56011746 56012056 -186652297 + AluSq SINE Alu 1 310 -3 21 82 0 0 chr1 56013668 56013717 -186650636 + AT_rich Low_complexity Low_complexity 1 49 0 223 151 0 38 chr1 56013884 56013910 -186650443 + (CAAA)n Simple_repeat Simple_repeat 2 27 -25 2219 121 0 0 chr1 56013910 56014207 -186650146 + AluSc SINE Alu 1 297 -12 223 151 0 38 chr1 56014207 56014233 -186650120 + (CAAA)n Simple_repeat Simple_repeat 27 52 0 2395 93 3 0 chr1 56014651 56014953 -186649400 + AluSp SINE Alu 1 303 -10 23 0 0 0 chr1 56015000 56015023 -186649330 + AT_rich Low_complexity Low_complexity 1 23 0 2751 264 69 35 chr1 56015316 56015578 -186648775 - L1M4 LINE L1 -2358 3788 3536 2055 57 0 8 chr1 56015578 56015823 -186648530 - AluY SINE Alu -15 296 54 2751 264 69 35 chr1 56015823 56016112 -186648241 - L1M4 LINE L1 -2610 3536 3258 2412 93 0 0 chr1 56016112 56016414 -186647939 - AluSc SINE Alu -7 302 1 2751 264 69 35 chr1 56016414 56017203 -186647150 - L1M4 LINE L1 -2888 3258 2360 2126 129 3 3 chr1 56017203 56017512 -186646841 + AluSq SINE Alu 1 309 -4 2751 264 69 35 chr1 56017512 56017529 -186646824 - L1M4 LINE L1 -3786 2360 2345 21 0 0 0 chr1 56017593 56017614 -186646739 + AT_rich Low_complexity Low_complexity 1 21 0 2083 113 3 3 chr1 56017617 56017899 -186646454 + AluSq SINE Alu 1 282 -31 188 188 0 0 chr1 56017965 56017997 -186646356 - MIR SINE MIR -229 33 2 584 254 85 62 chr1 56018215 56018487 -186645866 + L1ME LINE L1 5383 5660 -461 2387 92 3 3 chr1 56018691 56018996 -186645357 + AluSp SINE Alu 1 305 -8 597 288 15 3 chr1 56020850 56021026 -186643327 + MIR SINE MIR 3 185 -23 196 282 105 65 chr1 56021712 56021836 -186642517 + L2 LINE L2 3137 3265 -7 1514 118 5 5 chr1 56022025 56022237 -186642116 + AluSg/x SINE Alu 89 300 -12 258 174 0 0 chr1 56022319 56022365 -186641988 + L2 LINE L2 3267 3312 -1 2154 90 7 42 chr1 56022482 56022792 -186641561 + AluSq SINE Alu 1 299 -14 2164 132 3 0 chr1 56022955 56023258 -186641095 - AluSp SINE Alu -9 304 1 2032 134 3 0 chr1 56023448 56023746 -186640607 - AluSx SINE Alu -13 299 1 542 146 0 0 chr1 56024804 56024886 -186639467 + AluJb SINE Alu 208 289 -23 286 291 0 47 chr1 56025134 56025220 -186639133 + L2 LINE L2 3191 3272 0 534 260 87 12 chr1 56025340 56025513 -186638840 - MIR SINE MIR -69 193 8 3031 154 2 6 chr1 56025912 56026400 -186637953 + MER66B LTR ERV1 1 486 0 396 322 95 0 chr1 56026864 56027018 -186637335 - MIR3 SINE MIR -21 187 20 2545 68 0 3 chr1 56027481 56027792 -186636561 + AluSp SINE Alu 1 310 -3 304 306 66 16 chr1 56028259 56028380 -186635973 - MIR SINE MIR -111 151 25 1549 156 37 83 chr1 56029457 56029783 -186634570 + AluJb SINE Alu 1 311 -1 388 322 59 0 chr1 56029787 56029905 -186634448 + MIR3 SINE MIR 31 155 -53 250 333 122 0 chr1 56030899 56031046 -186633307 + MIR SINE MIR 49 213 -49 697 309 27 0 chr1 56031190 56031410 -186632943 + MIR SINE MIR 36 261 -1 2205 117 3 0 chr1 56031480 56031778 -186632575 + AluSx SINE Alu 1 299 -13 277 268 0 48 chr1 56031826 56031930 -186632423 - L1MA10 LINE L1 -8 6304 6209 291 325 68 17 chr1 56032219 56032336 -186632017 - MIR3 SINE MIR -10 198 76 326 286 0 22 chr1 56032587 56032678 -186631675 + L1MC4 LINE L1 6614 6702 -1340 186 103 0 0 chr1 56032689 56032718 -186631635 + (TA)n Simple_repeat Simple_repeat 1 29 0 1867 112 32 28 chr1 56032720 56033005 -186631348 - AluSq SINE Alu -27 286 1 2334 159 68 19 chr1 56033360 56033844 -186630509 - Charlie1a DNA MER1_type 0 1455 948 25 0 0 0 chr1 56033845 56033870 -186630483 + AT_rich Low_complexity Low_complexity 1 25 0 1824 190 14 36 chr1 56033915 56034331 -186630022 - Charlie1a DNA MER1_type -504 951 545 1135 158 115 19 chr1 56034355 56034564 -186629789 + MER46A DNA MER2_type 1 229 -7 1950 214 52 48 chr1 56034567 56034983 -186629370 - Charlie1a DNA MER1_type -2220 541 121 2158 123 3 0 chr1 56034983 56035283 -186629070 + AluSx SINE Alu 1 301 -11 1950 214 52 48 chr1 56035283 56035403 -186628950 - Charlie1a DNA MER1_type -2640 121 3 2245 109 7 3 chr1 56035411 56035705 -186628648 - AluSq SINE Alu -17 296 2 205 169 130 65 chr1 56035830 56035907 -186628446 - MIR SINE MIR -62 200 119 1064 172 6 0 chr1 56035909 56036083 -186628270 - AluJb SINE Alu -6 306 132 1857 154 3 10 chr1 56036085 56036383 -186627970 - AluJo SINE Alu -16 296 1 187 269 15 75 chr1 56036419 56036486 -186627867 - MIR SINE MIR -184 78 16 23 54 0 0 chr1 56036716 56036753 -186627600 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 56036845 56036880 -186627473 + AT_rich Low_complexity Low_complexity 1 35 0 237 254 71 79 chr1 56037220 56037346 -186627007 - MIR SINE MIR 0 262 138 270 327 102 74 chr1 56037850 56038511 -186625842 + L2 LINE L2 2590 3270 -2 2315 93 7 0 chr1 56038636 56038946 -186625407 + AluSq SINE Alu 2 313 0 664 217 0 0 chr1 56039724 56039872 -186624481 + FLAM_A SINE Alu 1 148 0 4612 89 155 19 chr1 56040842 56041569 -186622784 + LTR12 LTR ERV1 1 826 0 1445 194 80 23 chr1 56041587 56041937 -186622416 + MLT1A2 LTR MaLR 1 370 -4 754 171 0 0 chr1 56042122 56042245 -186622108 + FLAM_C SINE Alu 1 123 -20 23 68 0 0 chr1 56042407 56042451 -186621902 + AT_rich Low_complexity Low_complexity 1 44 0 2461 63 3 0 chr1 56042453 56042754 -186621599 - AluSp SINE Alu -11 302 1 662 214 32 0 chr1 56042754 56042880 -186621473 - MER3 DNA MER1_type -68 141 12 188 436 0 18 chr1 56044829 56044939 -186619414 + MIR3 SINE MIR 14 121 -87 2184 99 0 7 chr1 56045683 56045989 -186618364 - AluSx SINE Alu 0 308 5 1586 180 24 7 chr1 56046085 56046374 -186617979 + AluJo SINE Alu 1 294 -18 489 90 0 0 chr1 56046380 56046447 -186617906 + AluS SINE Alu 1 67 -246 1612 140 8 0 chr1 56046464 56046699 -186617654 - AluSx SINE Alu -75 237 1 1031 240 0 18 chr1 56046851 56047072 -186617281 - MER58A DNA MER1_type -1 223 7 254 197 42 134 chr1 56047108 56047250 -186617103 - L1ME LINE L1 -345 5776 5648 1762 134 32 14 chr1 56047875 56048159 -186616194 - AluSx SINE Alu -23 289 1 2353 90 0 0 chr1 56048352 56048651 -186615702 - AluY SINE Alu -9 302 4 25 0 0 0 chr1 56051628 56051653 -186612700 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 56052185 56052215 -186612138 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr1 56054301 56054323 -186610030 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 56055346 56055367 -186608986 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr1 56058431 56058452 -186605901 + (A)n Simple_repeat Simple_repeat 1 21 0 2263 116 0 0 chr1 56058452 56058762 -186605591 + AluSq SINE Alu 1 310 -3 1752 148 0 0 chr1 56059025 56059275 -186605078 - AluSx SINE Alu -62 250 1 1916 101 10 56 chr1 56059431 56059737 -186604616 - AluSx SINE Alu -20 292 1 22 0 0 0 chr1 56059914 56059936 -186604417 + AT_rich Low_complexity Low_complexity 1 22 0 290 185 0 65 chr1 56060314 56060422 -186603931 + (TA)n Simple_repeat Simple_repeat 2 102 0 25 65 0 0 chr1 56060741 56060787 -186603566 + AT_rich Low_complexity Low_complexity 1 46 0 2591 183 50 6 chr1 56060971 56061621 -186602732 + L1M4 LINE L1 4759 5443 -735 * 3124 136 46 73 chr1 56061609 56062107 -186602246 + L1MA7 LINE L1 5648 6158 -133 468 0 0 0 chr1 56062107 56062159 -186602194 + (CA)n Simple_repeat Simple_repeat 1 52 0 3124 136 46 73 chr1 56062159 56062207 -186602146 + L1MA7 LINE L1 6158 6206 -85 1482 161 24 4 chr1 56062207 56062462 -186601891 - AluJb SINE Alu -52 260 1 3124 136 46 73 chr1 56062462 56062570 -186601783 + L1MA7 LINE L1 6206 6285 -6 380 269 58 0 chr1 56062774 56062878 -186601475 - L3 LINE CR1 -160 1417 1308 1874 166 34 0 chr1 56062919 56063214 -186601139 - AluSx SINE Alu -7 305 1 204 182 0 0 chr1 56063655 56063688 -186600665 - MIR SINE MIR -10 252 220 21 36 0 0 chr1 56063692 56063720 -186600633 + AT_rich Low_complexity Low_complexity 1 28 0 459 258 10 0 chr1 56063805 56063902 -186600451 + L2 LINE L2 3171 3268 -4 210 326 118 56 chr1 56064076 56064185 -186600168 - L2 LINE L2 -435 2879 2778 1939 132 13 13 chr1 56064185 56064489 -186599864 - AluSx SINE Alu -8 304 1 210 326 118 56 chr1 56064489 56064649 -186599704 - L2 LINE L2 -536 2778 2593 5328 215 66 16 chr1 56064656 56064873 -186599480 + L1 LINE L1 3850 4055 -2091 2413 98 0 0 chr1 56064873 56065180 -186599173 - AluSx SINE Alu -5 307 1 5328 215 66 16 chr1 56065180 56066380 -186597973 + L1 LINE L1 4055 5338 -808 312 281 72 88 chr1 56066390 56066639 -186597714 + L1M2a LINE L1 1149 1393 -5775 837 238 10 0 chr1 56067368 56067570 -186596783 + L1M2a LINE L1 1916 2119 -4979 319 183 17 0 chr1 56067570 56067630 -186596723 + AluJo SINE Alu 76 136 -166 1724 122 41 0 chr1 56067630 56067875 -186596478 - AluSq SINE Alu -58 255 1 201 310 35 0 chr1 56067879 56067937 -186596416 + L2 LINE L2 3204 3263 -9 268 273 27 55 chr1 56068004 56068114 -186596239 + L2 LINE L2 3016 3122 -150 205 239 45 45 chr1 56068140 56068207 -186596146 + L2 LINE L2 3199 3265 -7 191 158 53 0 chr1 56069733 56069771 -186594582 + MIR3 SINE MIR 161 200 -8 1045 166 18 69 chr1 56069820 56070037 -186594316 - AluJb SINE Alu -20 292 87 220 111 37 19 chr1 56072104 56072158 -186592195 + T-rich Low_complexity Low_complexity 4 58 0 23 0 0 0 chr1 56072469 56072492 -186591861 + AT_rich Low_complexity Low_complexity 1 23 0 30 45 0 0 chr1 56072557 56072601 -186591752 + AT_rich Low_complexity Low_complexity 1 44 0 678 94 0 0 chr1 56072931 56073027 -186591326 - AluY SINE Alu -215 96 1 404 129 14 0 chr1 56073027 56073097 -186591256 - L1M4 LINE L1 -509 5675 5605 3901 166 19 61 chr1 56073120 56073474 -186590879 - L1MB3 LINE L1 0 6183 5816 274 23 47 0 chr1 56073474 56073517 -186590836 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 2308 71 3 0 chr1 56073517 56073799 -186590554 - AluSp SINE Alu -30 283 1 3901 166 19 61 chr1 56073799 56074164 -186590189 - L1MB3 LINE L1 -366 5817 5438 2342 88 0 3 chr1 56074164 56074469 -186589884 - AluY SINE Alu 0 311 8 3901 166 19 61 chr1 56074469 56074568 -186589785 - L1MB3 LINE L1 -745 5438 5407 2249 92 31 0 chr1 56074568 56074862 -186589491 - AluSx SINE Alu -9 303 1 3901 166 19 61 chr1 56074862 56074991 -186589362 - L1MB3 LINE L1 -776 5407 5274 349 202 56 0 chr1 56074964 56075053 -186589300 + L1MB7 LINE L1 6031 6124 -60 * 2228 114 10 0 chr1 56075201 56075508 -186588845 + AluSx SINE Alu 1 310 -2 2257 88 0 3 chr1 56075508 56075804 -186588549 + AluY SINE Alu 1 295 -16 565 277 43 0 chr1 56075804 56075992 -186588361 + L1PA16 LINE L1 2323 2518 -3628 1058 75 0 0 chr1 56075994 56076127 -186588226 + AluSq/x SINE Alu 1 133 -180 9263 186 34 17 chr1 56076224 56077578 -186586775 + L1PA16 LINE L1 2959 4289 -1877 2173 133 3 0 chr1 56077578 56077871 -186586482 + AluSx SINE Alu 3 296 -16 9263 186 34 17 chr1 56077871 56079499 -186584854 + L1PA16 LINE L1 4289 5985 -181 1233 336 77 22 chr1 56079688 56080425 -186583928 - L2 LINE L2 -494 2820 2043 1098 215 89 75 chr1 56080454 56080891 -186583462 + L1ME3A LINE L1 5692 6136 -34 655 271 131 8 chr1 56080919 56081163 -186583190 - L2 LINE L2 -1342 1972 1699 213 204 0 0 chr1 56081172 56081216 -186583137 + (TG)n Simple_repeat Simple_repeat 2 45 0 577 275 127 0 chr1 56081985 56082174 -186582179 + MIR SINE MIR 50 262 0 277 53 0 70 chr1 56082238 56082295 -186582058 - AluSp/q SINE Alu 0 303 251 1827 146 11 0 chr1 56082805 56083066 -186581287 - AluSx SINE Alu -11 301 38 963 230 94 46 chr1 56083320 56083924 -186580429 + LTR48 LTR ERV1 1 787 0 267 100 20 20 chr1 56083975 56084025 -186580328 - AluSc SINE Alu -3 296 247 1900 88 68 4 chr1 56084054 56084317 -186580036 - AluSc SINE Alu -29 280 1 1637 196 7 7 chr1 56084427 56084728 -186579625 - AluJb SINE Alu -11 301 1 2350 64 7 3 chr1 56085171 56085469 -186578884 + AluY SINE Alu 1 299 -12 198 203 38 18 chr1 56085484 56085536 -186578817 + MIR SINE MIR 57 99 -109 * 211 308 53 30 chr1 56085531 56085664 -186578689 - MIR SINE MIR -15 247 112 640 206 8 0 chr1 56085972 56086098 -186578255 + AluSg/x SINE Alu 166 292 -20 414 188 43 72 chr1 56086142 56086350 -186578003 + L1MC5 LINE L1 7610 7811 -150 2343 116 0 0 chr1 56086353 56086656 -186577697 + AluSx SINE Alu 1 303 -9 2302 110 0 0 chr1 56086801 56087110 -186577243 + AluSg SINE Alu 1 309 -1 724 225 145 29 chr1 56087110 56087257 -186577096 - L1MEc LINE L1 -4049 2347 2218 2183 102 36 13 chr1 56087257 56087562 -186576791 - AluSx SINE Alu 0 312 1 724 225 145 29 chr1 56087562 56087862 -186576491 - L1MEc LINE L1 -4178 2218 1848 1485 264 107 72 chr1 56087879 56088029 -186576324 - L1MEc LINE L1 -5247 1149 1006 2079 130 0 3 chr1 56088029 56088322 -186576031 - AluSx SINE Alu -16 296 5 1485 264 107 72 chr1 56088322 56089249 -186575104 - L1MEc LINE L1 -5390 1006 35 471 238 30 92 chr1 56089793 56089832 -186574521 - MIR SINE MIR -10 252 212 809 230 17 64 chr1 56089832 56089974 -186574379 - MER58A DNA MER1_type -2196 224 96 2207 98 6 19 chr1 56089974 56090290 -186574063 + AluSx SINE Alu 1 312 0 809 230 17 64 chr1 56090290 56090382 -186573971 - MER58A DNA MER1_type -2324 96 1 471 238 30 92 chr1 56090382 56090405 -186573948 - MIR SINE MIR -50 212 189 323 225 0 0 chr1 56090405 56090485 -186573868 + MER116 DNA Mariner 1 80 0 471 238 30 92 chr1 56090485 56090585 -186573768 - MIR SINE MIR -73 189 99 1009 169 0 0 chr1 56091278 56091438 -186572915 - AluSg/x SINE Alu -12 298 139 1609 146 3 89 chr1 56091774 56092076 -186572277 + AluSg SINE Alu 3 278 -32 2498 80 3 0 chr1 56092114 56092426 -186571927 + AluSp SINE Alu 1 313 0 1970 120 12 58 chr1 56092437 56092763 -186571590 + AluSx SINE Alu 1 311 -1 562 176 49 7 chr1 56093391 56093533 -186570820 - L1MB7 LINE L1 0 6184 6037 490 261 22 11 chr1 56094709 56094889 -186569464 - L1MC5 LINE L1 -36 7925 7744 247 184 0 0 chr1 56094974 56095012 -186569341 - L2 LINE L2 -18 3254 3217 2173 112 14 0 chr1 56095465 56095760 -186568593 - AluSq SINE Alu -14 299 1 1063 173 0 0 chr1 56095760 56095928 -186568425 - AluSg/x SINE Alu -13 297 130 4458 150 42 14 chr1 56096028 56096794 -186567559 - MER54B LTR ERVL -6 787 1 2426 81 7 0 chr1 56096806 56097115 -186567238 - AluY SINE Alu 0 311 1 282 308 36 36 chr1 56097123 56097373 -186566980 - L1MEc LINE L1 -3109 3106 2857 2251 85 0 3 chr1 56097517 56097822 -186566531 - AluY SINE Alu 0 304 1 384 287 184 39 chr1 56097858 56098395 -186565958 - L1MEc LINE L1 -3617 2598 2032 277 319 139 7 chr1 56098476 56098620 -186565733 + MIR SINE MIR 99 261 -1 1433 238 10 44 chr1 56098877 56099264 -186565089 + MLT1A2 LTR MaLR 1 374 0 1904 151 0 0 chr1 56099272 56099544 -186564809 - AluSx SINE Alu -40 272 1 270 329 147 24 chr1 56099628 56099880 -186564473 + L2 LINE L2 1704 1986 -1328 2509 71 0 0 chr1 56099900 56100208 -186564145 + AluY SINE Alu 1 308 -3 1746 182 7 16 chr1 56101158 56101466 -186562887 - AluJo SINE Alu -7 305 1 2468 87 0 3 chr1 56101915 56102226 -186562127 + AluSq SINE Alu 1 310 -3 2314 106 3 0 chr1 56103611 56103912 -186560441 + AluSp SINE Alu 3 304 -9 205 182 30 45 chr1 56104572 56104638 -186559715 + (TA)n Simple_repeat Simple_repeat 2 66 0 232 200 0 0 chr1 56104679 56104729 -186559624 + L1MC4 LINE L1 6654 6703 -1339 225 294 0 0 chr1 56104729 56104780 -186559573 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 236 260 26 0 chr1 56104784 56104861 -186559492 + L1MC4 LINE L1 6617 6695 -1347 232 271 0 0 chr1 56104866 56104914 -186559439 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 239 302 57 19 chr1 56105090 56105196 -186559157 - MIR3 SINE MIR -11 197 88 985 253 61 44 chr1 56105466 56105810 -186558543 - L2 LINE L2 0 3313 2964 277 191 0 16 chr1 56105968 56106031 -186558322 + MER112 DNA MER1_type 105 166 -94 255 318 165 0 chr1 56106482 56106567 -186557786 - L2 LINE L2 0 3272 3174 1418 339 76 19 chr1 56106620 56107463 -186556890 - L2 LINE L2 -266 3047 2158 1697 198 10 25 chr1 56107474 56107788 -186556565 + AluJo SINE Alu 1 309 -3 1898 160 0 0 chr1 56107849 56108131 -186556222 - AluSx SINE Alu -30 282 1 1473 203 79 3 chr1 56108277 56108593 -186555760 + MER58B DNA MER1_type 1 340 -1 2273 125 0 0 chr1 56108763 56109075 -186555278 - AluSx SINE Alu 0 312 1 2143 115 7 0 chr1 56109240 56109527 -186554826 + AluSg SINE Alu 3 291 -19 2108 121 0 46 chr1 56110453 56110776 -186553577 + AluSq SINE Alu 1 308 -5 1793 164 148 8 chr1 56110864 56111236 -186553117 + MSTA LTR MaLR 1 424 -4 7877 178 66 6 chr1 56111240 56111696 -186552657 + MSTA-int LTR MaLR 1 428 -1223 396 0 0 0 chr1 56111696 56111740 -186552613 + (TA)n Simple_repeat Simple_repeat 2 45 0 2472 81 7 0 chr1 56111740 56112048 -186552305 - AluSp SINE Alu -3 310 1 7877 178 66 6 chr1 56112048 56113142 -186551211 + MSTA-int LTR MaLR 427 1646 -5 2096 140 119 8 chr1 56113147 56113532 -186550821 + MSTA LTR MaLR 1 428 0 2317 95 20 3 chr1 56113661 56113966 -186550387 + AluSq SINE Alu 2 311 -2 1728 178 0 10 chr1 56114960 56115252 -186549101 + AluJo SINE Alu 11 299 -13 414 268 28 42 chr1 56115263 56115405 -186548948 + MIR SINE MIR 117 256 -6 180 319 28 14 chr1 56115417 56115489 -186548864 + MIR SINE MIR 172 244 -18 427 86 0 0 chr1 56115742 56115800 -186548553 + U6 snRNA snRNA 1 58 -49 367 246 33 5 chr1 56115863 56116020 -186548333 - L1ME1 LINE L1 -61 6104 5939 2160 122 10 6 chr1 56116058 56116369 -186547984 - AluSx SINE Alu 0 312 1 227 89 0 22 chr1 56116426 56116471 -186547882 - L1MEc LINE L1 -2191 4191 4148 256 207 53 136 chr1 56116596 56116765 -186547588 + L1M4 LINE L1 3923 4077 -2069 2124 128 0 28 chr1 56116797 56117116 -186547237 - AluSg SINE Alu 0 310 1 1205 269 84 37 chr1 56117190 56117439 -186546914 - L1MEc LINE L1 -2371 4011 3775 2176 114 0 7 chr1 56117439 56117746 -186546607 - AluSx SINE Alu -7 305 1 1205 269 84 37 chr1 56117746 56118150 -186546203 - L1MEc LINE L1 -2607 3775 3327 2169 121 7 3 chr1 56118151 56118458 -186545895 - AluSx SINE Alu -4 308 1 1183 239 91 29 chr1 56118486 56118972 -186545381 - L1ME1 LINE L1 -5 6161 5646 2208 226 49 19 chr1 56119011 56119229 -186545124 - L1MEc LINE L1 -5254 1142 932 2199 123 0 0 chr1 56119229 56119530 -186544823 - AluSg SINE Alu -9 301 1 2208 226 49 19 chr1 56119530 56119961 -186544392 - L1MEc LINE L1 -5464 932 473 246 237 0 0 chr1 56119957 56120016 -186544337 - L1MEc LINE L1 -6293 103 45 * 1710 254 76 52 chr1 56120026 56120159 -186544194 - L1MEc LINE L1 -3058 3324 3196 2313 117 48 14 chr1 56120159 56120511 -186543842 - THE1B LTR MaLR 0 364 1 11716 91 8 0 chr1 56120511 56122078 -186542275 - THE1B-int LTR MaLR 0 1580 1 2253 89 71 31 chr1 56122078 56122428 -186541925 - THE1B LTR MaLR 0 364 1 1710 254 76 52 chr1 56122428 56123400 -186540953 - L1MEc LINE L1 -3185 3197 2214 1869 169 7 0 chr1 56123402 56123692 -186540661 - AluSx SINE Alu -20 292 1 1063 104 0 0 chr1 56123692 56123827 -186540526 - AluSq/x SINE Alu -176 136 2 813 246 79 38 chr1 56123827 56124306 -186540047 - L1MEc LINE L1 -4343 2220 1489 1999 97 0 0 chr1 56124306 56124585 -186539768 - AluY SINE Alu 0 311 32 813 246 79 38 chr1 56124585 56124601 -186539752 - L1MEc LINE L1 -5074 1489 1475 7571 29 0 0 chr1 56124621 56125551 -186538802 - L1PA3 LINE L1 0 6155 5230 23687 30 0 0 chr1 56125570 56128424 -186535929 + L1PA3 LINE L1 2397 5250 -896 2040 122 3 10 chr1 56128449 56128743 -186535610 + AluSx SINE Alu 1 292 -20 186 43 0 0 chr1 56128753 56128776 -186535577 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 402 326 42 45 chr1 56128800 56129159 -186535194 - L1MEc LINE L1 -4900 1484 1127 1894 178 66 11 chr1 56129186 56129713 -186534640 + Charlie1 DNA MER1_type 2046 2663 -98 801 336 33 13 chr1 56129846 56130242 -186534111 - L1MEc LINE L1 -5961 602 199 2308 90 0 3 chr1 56131285 56131585 -186532768 + AluSq SINE Alu 1 299 -14 1262 196 0 13 chr1 56131951 56132176 -186532177 + L1PA15 LINE L1 54 275 -6564 * 16938 212 21 17 chr1 56132175 56135245 -186529108 + L1PA15 LINE L1 1567 4654 -2214 2181 130 0 0 chr1 56135245 56135545 -186528808 + AluSx SINE Alu 1 300 -12 16938 212 21 17 chr1 56135545 56137093 -186527260 + L1PA15 LINE L1 4654 6195 -673 2280 108 0 0 chr1 56137095 56137402 -186526951 + AluSq SINE Alu 1 307 -6 198 0 0 0 chr1 56137652 56137674 -186526679 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 4607 105 0 5 chr1 56137675 56138332 -186526021 + L1PA15 LINE L1 6197 6850 -18 28 0 0 0 chr1 56138372 56138400 -186525953 + AT_rich Low_complexity Low_complexity 1 28 0 530 250 0 9 chr1 56138641 56138749 -186525604 + FRAM SINE Alu 39 145 -31 2746 194 40 38 chr1 56138784 56139450 -186524903 + L1MA7 LINE L1 5620 6287 -4 208 266 0 76 chr1 56139806 56139885 -186524468 - MIR SINE MIR -139 123 51 195 301 97 71 chr1 56140166 56140279 -186524074 - L2 LINE L2 -3 3269 3154 23 0 0 0 chr1 56140582 56140605 -186523748 + AT_rich Low_complexity Low_complexity 1 23 0 243 398 30 62 chr1 56140727 56141162 -186523191 - L2 LINE L2 0 3272 2852 24 0 0 0 chr1 56142115 56142139 -186522214 + AT_rich Low_complexity Low_complexity 1 24 0 752 197 7 0 chr1 56142458 56142600 -186521753 + FLAM_C SINE Alu 1 143 0 1562 159 7 51 chr1 56142622 56142917 -186521436 + AluJo SINE Alu 13 294 -18 1751 241 107 19 chr1 56143263 56143832 -186520521 + L1ME3 LINE L1 5464 6082 -80 1680 152 103 24 chr1 56143850 56144180 -186520173 - Tigger2 DNA MER2_type -1 2717 2362 567 199 0 46 chr1 56144180 56144311 -186520042 + FRAM SINE Alu 33 157 -19 282 29 0 0 chr1 56144311 56144346 -186520007 + (CA)n Simple_repeat Simple_repeat 2 36 0 4221 123 47 9 chr1 56144347 56145022 -186519331 - Tigger1 DNA MER2_type -354 2064 1364 22 80 0 0 chr1 56145031 56145081 -186519272 + AT_rich Low_complexity Low_complexity 1 50 0 950 249 105 23 chr1 56145099 56145287 -186519066 + L1MB1 LINE L1 2025 2196 -4268 755 203 0 0 chr1 56145287 56145420 -186518933 + FLAM_A SINE Alu 1 133 0 950 249 105 23 chr1 56145420 56145456 -186518897 + L1MB1 LINE L1 2196 2228 -4236 327 96 0 0 chr1 56145456 56145508 -186518845 + (CA)n Simple_repeat Simple_repeat 1 52 0 950 249 105 23 chr1 56145508 56145755 -186518598 + L1MB1 LINE L1 2228 2576 -3888 1654 246 32 18 chr1 56146785 56147345 -186517008 + L1MB1 LINE L1 2513 3080 -3302 3565 112 53 153 chr1 56147355 56148025 -186516328 + Tigger3b DNA MER2_type 1 679 -2350 863 139 0 29 chr1 56148025 56148162 -186516191 - FLAM_C SINE Alu -6 137 5 3565 112 53 153 chr1 56148162 56148427 -186515926 + Tigger3b DNA MER2_type 679 969 -263 8219 174 32 69 chr1 56148537 56149077 -186515276 + L1MB1 LINE L1 3565 4123 -2281 2162 111 0 3 chr1 56149077 56149365 -186514988 + AluSx SINE Alu 1 287 -25 8219 174 32 69 chr1 56149365 56150562 -186513791 + L1MB1 LINE L1 4123 5363 -1041 465 139 0 0 chr1 56150562 56150641 -186513712 + AluJ/FRAM SINE Alu 227 305 -7 8219 174 32 69 chr1 56150641 56151331 -186513022 + L1MB1 LINE L1 5363 5939 -465 1863 143 7 20 chr1 56151331 56151632 -186512721 + AluJo SINE Alu 1 297 -15 8219 174 32 69 chr1 56151632 56152077 -186512276 + L1MB1 LINE L1 5939 6399 -5 573 360 86 2 chr1 56152132 56152403 -186511950 - L2 LINE L2 -284 2988 2703 1021 185 66 113 chr1 56152763 56153142 -186511211 + MLT1A1 LTR MaLR 5 365 0 211 343 93 48 chr1 56154095 56154315 -186510038 + L2 LINE L2 1336 1583 -1731 1656 188 0 10 chr1 56154315 56154618 -186509735 - AluJo SINE Alu -10 302 3 211 343 93 48 chr1 56154618 56154796 -186509557 + L2 LINE L2 1583 1752 -1562 687 337 129 14 chr1 56154853 56155435 -186508918 + L2 LINE L2 2329 2977 -337 304 314 22 88 chr1 56155585 56155632 -186508721 + L2 LINE L2 3186 3235 -78 2102 106 34 0 chr1 56155632 56155925 -186508428 - AluSg SINE Alu -7 303 1 304 314 22 88 chr1 56155925 56156014 -186508339 + L2 LINE L2 3235 3313 0 38 0 0 0 chr1 56156262 56156300 -186508053 + AT_rich Low_complexity Low_complexity 1 38 0 453 251 213 19 chr1 56156318 56156529 -186507824 - MER112 DNA MER1_type -3 257 6 552 272 64 29 chr1 56156798 56156971 -186507382 + LTR50 LTR ERVL 4 182 -613 522 251 226 7 chr1 56157061 56157355 -186506998 + LTR50 LTR ERVL 344 787 -8 386 308 87 78 chr1 56157979 56158405 -186505948 + ERVL LTR ERVL 1177 1606 -4158 208 139 0 0 chr1 56158460 56158496 -186505857 + (T)n Simple_repeat Simple_repeat 1 36 0 522 380 46 11 chr1 56158510 56158881 -186505472 + ERVL LTR ERVL 1640 2023 -3741 551 344 11 0 chr1 56158912 56159095 -186505258 + ERVL LTR ERVL 2084 2268 -3496 677 286 64 35 chr1 56159098 56159335 -186505018 + ERVL LTR ERVL 2567 2819 -2945 1310 176 0 21 chr1 56159335 56159574 -186504779 + MER46A DNA MER2_type 2 235 -1 677 286 64 35 chr1 56159574 56159679 -186504674 + ERVL LTR ERVL 2819 2919 -2845 2488 284 62 27 chr1 56159741 56160109 -186504244 + ERVL LTR ERVL 3653 4007 -1757 2147 102 0 42 chr1 56160109 56160422 -186503931 - AluSq SINE Alu -13 300 1 2488 284 62 27 chr1 56160422 56160933 -186503420 + ERVL LTR ERVL 4007 4563 -1201 723 306 100 55 chr1 56161189 56161680 -186502673 + ERVL LTR ERVL 4865 5377 -387 183 42 0 0 chr1 56161690 56161714 -186502639 + (CA)n Simple_repeat Simple_repeat 2 25 0 301 287 11 21 chr1 56161860 56161954 -186502399 + LTR50 LTR ERVL 380 472 -323 331 278 53 23 chr1 56162201 56162334 -186502019 + LTR33A LTR ERVL 353 489 -34 1983 137 0 20 chr1 56162335 56162628 -186501725 + AluJb SINE Alu 3 289 -23 1583 186 55 0 chr1 56162905 56163196 -186501157 + AluJo SINE Alu 2 308 -4 631 196 45 23 chr1 56163211 56163344 -186501009 + FLAM_A SINE Alu 2 137 -5 288 338 87 0 chr1 56164139 56164257 -186500096 + MIR SINE MIR 36 149 -59 674 151 0 0 chr1 56164361 56164467 -186499886 - AluSx SINE Alu -8 304 199 1025 100 0 0 chr1 56164467 56164597 -186499756 - AluSx SINE Alu -182 130 1 525 284 131 14 chr1 56164653 56164875 -186499478 + MIR SINE MIR 1 248 -14 21 0 0 0 chr1 56165636 56165657 -186498696 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr1 56167246 56167289 -186497064 + AT_rich Low_complexity Low_complexity 1 43 0 2397 84 3 0 chr1 56167578 56167875 -186496478 - AluSp SINE Alu -15 298 1 431 292 39 8 chr1 56168815 56168945 -186495408 + MIR SINE MIR 8 141 -121 251 203 34 17 chr1 56169018 56169077 -186495276 + L2 LINE L2 3254 3313 0 186 351 128 0 chr1 56169134 56169228 -186495125 - L2 LINE L2 -232 3040 2935 349 282 0 24 chr1 56169573 56169658 -186494695 - L2 LINE L2 -5 3267 3185 255 262 262 10 chr1 56171349 56171452 -186492901 - MIR SINE MIR -26 236 108 744 226 120 20 chr1 56171486 56171937 -186492416 + L1MB7 LINE L1 5121 5607 -557 11807 219 50 29 chr1 56171974 56172729 -186491624 + L1PA15 LINE L1 1225 1962 -4854 2045 129 137 16 chr1 56172729 56173109 -186491244 - MSTA LTR MaLR 0 428 3 11807 219 50 29 chr1 56173109 56175429 -186488924 + L1PA15 LINE L1 1962 4231 -2585 2114 121 3 7 chr1 56175429 56175734 -186488619 + AluSq SINE Alu 1 304 -9 11807 219 50 29 chr1 56175734 56176222 -186488131 + L1PA15 LINE L1 4231 4707 -2109 1832 149 21 0 chr1 56176222 56176504 -186487849 + AluSx SINE Alu 1 288 -24 1511 200 0 15 chr1 56176510 56176780 -186487573 + AluJb SINE Alu 3 268 -44 249 98 0 0 chr1 56176786 56176827 -186487526 + (CAA)n Simple_repeat Simple_repeat 2 42 0 11807 219 50 29 chr1 56176827 56178690 -186485663 + L1PA15 LINE L1 4715 6816 0 415 217 163 93 chr1 56178720 56178926 -186485427 - L1ME4a LINE L1 -3 6118 5889 1718 156 0 8 chr1 56178926 56179189 -186485164 - AluJb SINE Alu -21 291 31 415 217 163 93 chr1 56179189 56179240 -186485113 - L1ME4a LINE L1 -232 5889 5843 358 141 56 28 chr1 56179277 56179348 -186485005 + L1MB7 LINE L1 5615 5687 -479 1367 151 36 12 chr1 56179350 56179602 -186484751 - Tigger7 DNA MER2_type -3 2488 2231 246 175 0 0 chr1 56179929 56179986 -186484367 + L1MB7 LINE L1 5814 5870 -294 347 237 21 0 chr1 56179995 56180088 -186484265 + L1ME2 LINE L1 5814 5908 -256 2066 114 18 102 chr1 56180088 56180527 -186483826 + L1MB3 LINE L1 5285 5686 -497 4432 126 70 22 chr1 56180545 56181198 -186483155 - L1PA16 LINE L1 -9 6157 5457 2252 106 0 10 chr1 56181198 56181500 -186482853 + AluSx SINE Alu 1 299 -13 4432 126 70 22 chr1 56181500 56181649 -186482704 - L1PA16 LINE L1 -709 5457 5317 2460 55 0 0 chr1 56181777 56182067 -186482286 - AluY SINE Alu -21 290 1 2809 215 8 9 chr1 56182067 56182724 -186481629 - L1PA16 LINE L1 -816 5330 4675 2720 145 22 18 chr1 56182730 56183234 -186481119 + L1MB3 LINE L1 5676 6181 -2 776 174 35 17 chr1 56183254 56183426 -186480927 + L1MB7 LINE L1 5999 6173 -11 281 220 93 68 chr1 56183499 56183617 -186480736 + L1ME2 LINE L1 5891 6011 -155 343 223 71 27 chr1 56183630 56183742 -186480611 + L1MA10 LINE L1 6217 6333 -1 1695 210 100 24 chr1 56183743 56184204 -186480149 + L1ME2 LINE L1 5430 5925 -239 588 196 0 0 chr1 56184204 56184311 -186480042 - MER46B DNA MER2_type 0 236 130 666 50 0 61 chr1 56184323 56184422 -186479931 + AluY SINE Alu 205 297 -14 1695 142 4 0 chr1 56184422 56184683 -186479670 - MER46B DNA MER2_type -99 137 1 537 226 99 95 chr1 56184683 56184904 -186479449 + L1ME2 LINE L1 5924 6145 -19 1544 173 4 43 chr1 56184904 56185181 -186479172 + AluJo SINE Alu 9 274 -38 282 29 0 0 chr1 56185198 56185233 -186479120 + (CA)n Simple_repeat Simple_repeat 1 35 0 1008 86 0 0 chr1 56185243 56185383 -186478970 + (TA)n Simple_repeat Simple_repeat 1 140 0 237 175 18 0 chr1 56185430 56185487 -186478866 + (TA)n Simple_repeat Simple_repeat 2 59 0 959 151 0 28 chr1 56185623 56185802 -186478551 + L1MB2 LINE L1 5921 6094 -77 449 262 28 117 chr1 56185803 56185893 -186478460 + MIR SINE MIR 17 113 -149 3208 131 27 55 chr1 56185893 56186527 -186477826 - L1MA9 LINE L1 -5 6307 5692 449 262 28 117 chr1 56186527 56186557 -186477796 + MIR SINE MIR 113 144 -118 631 52 0 0 chr1 56186557 56186634 -186477719 + MADE1 DNA Mariner 4 80 0 449 262 28 117 chr1 56186634 56186726 -186477627 + MIR SINE MIR 144 211 -51 263 322 103 20 chr1 56186805 56186951 -186477402 + MER5A DNA MER1_type 26 183 -6 729 271 64 14 chr1 56187107 56187325 -186477028 + MIR SINE MIR 20 248 -14 2339 97 3 0 chr1 56188326 56188637 -186475716 - AluSp SINE Alu -1 312 1 357 244 12 0 chr1 56189020 56189106 -186475247 + L2 LINE L2 2398 2484 -830 4179 151 39 12 chr1 56190043 56190804 -186473549 + L1MA4 LINE L1 5508 6289 -11 1659 249 59 71 chr1 56190841 56191832 -186472521 + L1ME LINE L1 2236 3237 -2909 2055 117 13 13 chr1 56191832 56192130 -186472223 + AluSx SINE Alu 1 298 -14 1659 249 59 71 chr1 56192130 56192437 -186471916 + L1ME LINE L1 3237 3521 -2625 5078 87 40 27 chr1 56192437 56193227 -186471126 + SVA Other Other 605 1404 0 1659 249 59 71 chr1 56193227 56193273 -186471080 + L1ME LINE L1 3521 3566 -2580 1717 257 81 39 chr1 56193404 56193820 -186470533 + L1ME LINE L1 4478 4875 -1295 2494 74 0 3 chr1 56193820 56194132 -186470221 - AluY SINE Alu 0 311 1 1717 257 81 39 chr1 56194132 56194766 -186469587 + L1ME LINE L1 4875 5569 -601 2128 110 26 23 chr1 56195662 56195972 -186468381 - AluSx SINE Alu 0 312 2 187 200 0 25 chr1 56196243 56196283 -186468070 + L2 LINE L2 2742 2780 -534 256 382 93 39 chr1 56196934 56197138 -186467215 + L2 LINE L2 3058 3272 0 339 214 133 95 chr1 56197208 56197418 -186466935 + MLT1C LTR MaLR 6 223 -244 2834 133 15 0 chr1 56197430 56197837 -186466516 + MER1A DNA MER1_type 117 529 0 2875 229 30 50 chr1 56198621 56199387 -186464966 - MER21B LTR ERV1 -112 751 1 232 290 29 72 chr1 56199474 56199526 -186464827 + L2 LINE L2 2614 2667 -647 2067 123 136 18 chr1 56199526 56199909 -186464444 + MSTA LTR MaLR 1 428 0 232 290 29 72 chr1 56199909 56199994 -186464359 + L2 LINE L2 2667 2745 -569 417 282 48 69 chr1 56200001 56200189 -186464164 - MIR3 SINE MIR -1 207 24 188 365 71 47 chr1 56200361 56200531 -186463822 - L2 LINE L2 -100 3172 2999 243 313 210 33 chr1 56200624 56200867 -186463486 - L2 LINE L2 -428 2886 2601 185 304 65 76 chr1 56200933 56201025 -186463328 + MIR SINE MIR 17 107 -155 1045 75 0 0 chr1 56201025 56201158 -186463195 + AluSg/x SINE Alu 173 305 -5 193 215 165 25 chr1 56201557 56201636 -186462717 + MIR SINE MIR 78 167 -95 969 200 0 0 chr1 56201721 56201896 -186462457 - FRAM SINE Alu 0 176 2 396 268 43 18 chr1 56202099 56202263 -186462090 - L1MC4 LINE L1 -6 8036 7869 263 111 0 0 chr1 56202263 56202308 -186462045 + L1MA5 LINE L1 6256 6300 0 855 235 77 84 chr1 56202319 56202510 -186461843 - L1MC4 LINE L1 -160 7882 7691 2555 65 3 0 chr1 56202510 56202818 -186461535 - AluY SINE Alu -2 309 1 855 235 77 84 chr1 56202818 56203065 -186461288 - L1MC4 LINE L1 -351 7691 7447 2320 88 0 0 chr1 56203310 56203605 -186460748 - AluY SINE Alu -16 295 1 24 103 0 0 chr1 56203916 56204003 -186460350 + AT_rich Low_complexity Low_complexity 1 87 0 206 255 34 20 chr1 56204026 56204175 -186460178 + (TA)n Simple_repeat Simple_repeat 2 152 0 26 30 0 0 chr1 56204660 56204693 -186459660 + AT_rich Low_complexity Low_complexity 1 33 0 1731 223 33 26 chr1 56205521 56206060 -186458293 + L1ME4a LINE L1 4850 5392 -754 450 299 0 0 chr1 56206062 56206199 -186458154 + L1ME2 LINE L1 6015 6151 -13 432 233 192 25 chr1 56206249 56206489 -186457864 + L1ME4a LINE L1 5545 5824 -297 279 230 204 9 chr1 56206942 56207055 -186457298 + L1ME4a LINE L1 5964 6098 -23 926 270 94 48 chr1 56208069 56208565 -186455788 + L2 LINE L2 2777 3299 -14 6148 121 32 10 chr1 56208810 56209886 -186454467 - L1MA4 LINE L1 0 6300 5201 364 319 101 49 chr1 56210176 56210483 -186453870 - L2 LINE L2 -2271 1043 721 539 191 36 89 chr1 56210614 56210782 -186453571 + LTR41 LTR ERVL 1 159 -614 2032 125 13 13 chr1 56211399 56211711 -186452642 + AluSq SINE Alu 1 312 -1 500 234 32 19 chr1 56211717 56211875 -186452478 + L1MCc LINE L1 1248 1407 -5016 601 250 87 65 chr1 56212831 56213253 -186451100 + L1MCc LINE L1 1390 1830 -5111 504 198 0 0 chr1 56213253 56213349 -186451004 + L1MB5 LINE L1 6071 6166 -8 601 250 87 65 chr1 56213349 56213525 -186450828 + L1MCc LINE L1 1830 2001 -4940 * 682 296 71 26 chr1 56213517 56213899 -186450454 + L1MCc LINE L1 2306 2704 -4418 2288 239 36 23 chr1 56213981 56214532 -186449821 + L1MC4a LINE L1 7110 7673 -135 2254 101 0 32 chr1 56214532 56214848 -186449505 + AluSg SINE Alu 1 306 -4 2288 239 36 23 chr1 56214848 56214960 -186449393 + L1MC4a LINE L1 7673 7782 -26 32 0 0 0 chr1 56216134 56216166 -186448187 + AT_rich Low_complexity Low_complexity 1 32 0 1764 157 39 3 chr1 56216637 56216923 -186447430 - AluSx SINE Alu -11 301 6 640 272 82 10 chr1 56218199 56218411 -186445942 + MIR SINE MIR 27 248 -14 312 286 83 38 chr1 56219518 56219651 -186444702 - MIR3 SINE MIR -33 175 37 738 146 46 15 chr1 56220371 56220501 -186443852 + MER46A DNA MER2_type 5 138 -98 834 163 95 42 chr1 56220530 56220720 -186443633 + MER46A DNA MER2_type 37 236 0 187 233 23 23 chr1 56222001 56222044 -186442309 + MIR SINE MIR 3 45 -217 686 266 128 39 chr1 56222130 56222676 -186441677 + L1ME4a LINE L1 5527 6121 0 21 36 0 0 chr1 56222847 56222875 -186441478 + AT_rich Low_complexity Low_complexity 1 28 0 365 190 9 60 chr1 56223860 56223976 -186440377 + L1M4 LINE L1 4927 5036 -1110 1112 196 60 14 chr1 56224015 56224296 -186440057 + MER33 DNA MER1_type 17 310 -14 551 158 11 21 chr1 56224359 56224454 -186439899 + L1PA16 LINE L1 406 499 -6350 6508 185 45 7 chr1 56224455 56226782 -186437571 + L1PA16 LINE L1 4455 6867 -2 684 224 63 0 chr1 56226814 56226957 -186437396 + MLT1A2 LTR MaLR 1 152 -222 1807 144 23 7 chr1 56226957 56227262 -186437091 + L1PB4 LINE L1 5845 6154 -2 22 0 0 0 chr1 56227345 56227367 -186436986 + AT_rich Low_complexity Low_complexity 1 22 0 554 269 30 25 chr1 56227371 56227572 -186436781 + MLT1A2 LTR MaLR 173 374 0 609 257 63 26 chr1 56227576 56227957 -186436396 + L1M4 LINE L1 897 1291 -5251 585 221 7 0 chr1 56227943 56228083 -186436270 + L1MA4 LINE L1 5956 6096 -204 * 6538 203 21 70 chr1 56228071 56229981 -186434372 + L1PB1 LINE L1 2829 4831 -2036 7763 19 3 0 chr1 56229981 56231404 -186432949 + L1PA3 LINE L1 4730 6155 0 6538 203 21 70 chr1 56231404 56233880 -186430473 + L1PB1 LINE L1 4831 6860 -7 2730 245 77 15 chr1 56233926 56234968 -186429385 - L1MEc LINE L1 -2961 3168 2094 407 294 40 57 chr1 56235032 56235260 -186429093 - L1MEc LINE L1 -4894 1225 1002 12800 145 41 16 chr1 56235670 56235726 -186428627 + Tigger1 DNA MER2_type 12 65 -2353 1973 148 3 3 chr1 56235726 56236031 -186428322 + AluSx SINE Alu 1 305 -7 12800 145 41 16 chr1 56236031 56237372 -186426981 + Tigger1 DNA MER2_type 65 1371 -1047 2261 59 0 0 chr1 56237372 56237645 -186426708 + AluY SINE Alu 38 310 -1 12800 145 41 16 chr1 56237645 56238166 -186426187 + Tigger1 DNA MER2_type 1371 1878 -540 2351 70 3 10 chr1 56238166 56238466 -186425887 + AluSq SINE Alu 1 298 -15 12800 145 41 16 chr1 56238466 56238877 -186425476 + Tigger1 DNA MER2_type 1878 2401 -17 320 192 312 0 chr1 56239076 56239201 -186425152 + MER41B LTR ERV1 178 341 -294 * 1018 196 120 11 chr1 56239181 56239456 -186424897 + MER66A LTR ERV1 174 478 0 1469 229 10 7 chr1 56239913 56240210 -186424143 - AluJo SINE Alu -14 298 1 1415 153 0 45 chr1 56240310 56240552 -186423801 - AluJb SINE Alu -1 311 81 1178 138 76 62 chr1 56240821 56241001 -186423352 - L1MA8 LINE L1 -6 6285 6098 2231 130 0 0 chr1 56241001 56241302 -186423051 - AluSg SINE Alu -9 301 1 1178 138 76 62 chr1 56241302 56241425 -186422928 - L1MA8 LINE L1 -193 6098 5978 211 390 22 67 chr1 56241550 56241819 -186422534 - L2 LINE L2 -98 3174 2918 4075 143 43 64 chr1 56241857 56242129 -186422224 + L1MC3 LINE L1 6702 6978 -807 2198 90 7 0 chr1 56242129 56242435 -186421918 - AluSx SINE Alu 0 308 1 4075 143 43 64 chr1 56242435 56243057 -186421296 + L1MC3 LINE L1 6978 7579 -206 22 0 0 0 chr1 56243149 56243171 -186421182 + AT_rich Low_complexity Low_complexity 1 22 0 2118 182 45 7 chr1 56243336 56243780 -186420573 + MER65C LTR ERV1 1 461 0 199 224 134 0 chr1 56244193 56244260 -186420093 - MIR SINE MIR -48 214 139 361 250 178 20 chr1 56244320 56244472 -186419881 - MIR SINE MIR -66 196 21 1865 158 3 0 chr1 56244515 56244800 -186419553 + AluSx SINE Alu 1 286 -26 288 77 0 0 chr1 56244800 56244839 -186419514 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 1174 141 16 0 chr1 56245224 56245408 -186418945 + MER5A DNA MER1_type 3 189 0 1027 208 48 84 chr1 56245917 56246288 -186418065 + MLT1A2 LTR MaLR 4 361 -13 458 251 16 64 chr1 56246492 56246679 -186417674 - MER5B DNA MER1_type 0 178 1 405 298 9 9 chr1 56246727 56246841 -186417512 - MER5A DNA MER1_type -50 139 26 191 290 14 14 chr1 56246893 56246962 -186417391 + L2 LINE L2 2933 3001 -271 1977 128 0 31 chr1 56247863 56248202 -186416151 + AluSx SINE Alu 1 330 0 2281 94 7 3 chr1 56248255 56248554 -186415799 + AluSx SINE Alu 1 300 -12 209 261 58 0 chr1 56248576 56248645 -186415708 - L2 LINE L2 -1344 1970 1898 462 295 61 105 chr1 56248905 56249363 -186414990 + L1MC4 LINE L1 7340 7777 -265 2109 96 0 0 chr1 56249393 56249665 -186414688 + AluSx SINE Alu 1 272 -40 1940 114 26 49 chr1 56249783 56250090 -186414263 + AluSx SINE Alu 1 300 -12 2312 227 20 28 chr1 56250113 56250795 -186413558 - L1 LINE L1 -2298 5267 4591 216 172 0 0 chr1 56250830 56250888 -186413465 + CT-rich Low_complexity Low_complexity 1 58 0 4418 137 35 7 chr1 56250888 56251940 -186412413 - L1 LINE L1 -3645 3920 2839 * 39083 66 8 1 chr1 56251933 56258043 -186406310 - L1PA5 LINE L1 -4 6150 3 9593 140 36 27 chr1 56258041 56259586 -186404767 - L1 LINE L1 -4712 2853 1289 * 2167 112 0 7 chr1 56259586 56259880 -186404473 + AluSx SINE Alu 21 312 0 9593 140 36 27 chr1 56259880 56260095 -186404258 - L1 LINE L1 -6276 1289 1077 6298 179 24 41 chr1 56260088 56261666 -186402687 + L1M4 LINE L1 2659 4210 -1936 * 1066 145 23 23 chr1 56261670 56261842 -186402511 + AluJb SINE Alu 119 290 -22 907 73 59 0 chr1 56261842 56261994 -186402359 + L1MA3 LINE L1 6143 6299 -1 2354 168 20 24 chr1 56262025 56262519 -186401834 + L1MB3 LINE L1 5692 6183 0 713 229 12 25 chr1 56262533 56262778 -186401575 + L1M4 LINE L1 4316 4557 -1589 207 219 0 0 chr1 56262954 56262995 -186401358 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 214 357 36 9 chr1 56263001 56263113 -186401240 + L3 LINE CR1 1462 1576 -1 260 263 134 39 chr1 56263234 56263413 -186400940 + MLT1H LTR MaLR 29 224 -325 279 239 11 45 chr1 56263568 56263656 -186400697 + MLT1H LTR MaLR 454 538 -11 924 186 12 12 chr1 56263709 56263895 -186400458 + FAM SINE Alu 1 175 0 255 263 26 0 chr1 56264001 56264077 -186400276 + L1MC4a LINE L1 5845 5922 -1886 751 244 63 61 chr1 56264310 56264994 -186399359 - L1MEc LINE L1 -4923 1473 789 1697 175 34 3 chr1 56265408 56265700 -186398653 - AluJb SINE Alu -11 301 1 25 75 0 0 chr1 56265710 56265763 -186398590 + AT_rich Low_complexity Low_complexity 1 53 0 325 257 18 18 chr1 56265836 56265949 -186398404 + MER97a DNA MER1_type? 781 893 -1 1719 157 45 0 chr1 56266293 56266579 -186397774 - AluSx SINE Alu -13 299 1 1597 251 110 28 chr1 56266812 56267394 -186396959 - L2 LINE L2 -1922 1392 763 585 273 31 40 chr1 56267394 56267621 -186396732 - L2 LINE L2 -3088 226 2 15972 128 11 99 chr1 56268929 56272520 -186391833 + L1P LINE L1 13 3285 -2861 369 263 42 6 chr1 56272733 56273001 -186391352 + L1ME LINE L1 5189 5440 -724 2370 119 0 0 chr1 56273052 56273363 -186390990 + AluSx SINE Alu 1 311 -1 316 286 78 31 chr1 56274139 56274394 -186389959 + L1MCc LINE L1 1175 1441 -4982 824 149 22 8 chr1 56274401 56274535 -186389818 - AluSq/x SINE Alu -176 136 1 829 149 103 92 chr1 56274788 56274909 -186389444 + MSTA LTR MaLR 232 357 -71 7463 51 8 0 chr1 56274909 56276626 -186387727 - L1PA6 LINE L1 -2 6152 4429 829 149 103 92 chr1 56276626 56276699 -186387654 + MSTA LTR MaLR 357 428 0 309 268 72 51 chr1 56276743 56277174 -186387179 + L1MCc LINE L1 1912 2415 -887 3517 232 72 63 chr1 56277193 56278338 -186386015 + L1M4c LINE L1 1243 2376 -4006 2239 117 3 0 chr1 56278338 56278637 -186385716 - AluSp SINE Alu -11 302 3 3517 232 72 63 chr1 56278637 56278930 -186385423 + L1M4c LINE L1 2376 2665 -3717 1926 162 3 3 chr1 56278930 56279227 -186385126 + AluJb SINE Alu 1 297 -15 3517 232 72 63 chr1 56279227 56279909 -186384444 + L1M4c LINE L1 2665 3601 -2781 1935 150 41 0 chr1 56279909 56280203 -186384150 + AluSx SINE Alu 1 306 -6 3517 232 72 63 chr1 56280203 56280598 -186383755 + L1M4c LINE L1 3601 3991 -2391 5155 119 12 13 chr1 56280601 56281243 -186383110 - L1PA16 LINE L1 -16 6150 5508 1855 169 3 22 chr1 56281243 56281556 -186382797 - AluJb SINE Alu -5 307 1 5155 119 12 13 chr1 56281556 56281717 -186382636 - L1PA16 LINE L1 -658 5508 5348 2220 121 0 3 chr1 56281717 56282015 -186382338 - AluSx SINE Alu -15 297 1 5155 119 12 13 chr1 56282015 56282537 -186381816 - L1PA16 LINE L1 -818 5348 4806 379 214 95 62 chr1 56282660 56282804 -186381549 + MER5C DNA MER1_type 108 263 -61 1747 125 14 49 chr1 56282804 56282929 -186381424 + AluSx SINE Alu 20 148 -164 2225 100 7 10 chr1 56282929 56283230 -186381123 + AluSx SINE Alu 1 300 -12 1747 125 14 49 chr1 56283230 56283392 -186380961 + AluSx SINE Alu 148 297 -15 379 214 95 62 chr1 56283392 56283457 -186380896 + MER5C DNA MER1_type 263 324 0 466 78 0 26 chr1 56283898 56283975 -186380378 - MER1B DNA MER1_type 0 339 265 1361 131 15 0 chr1 56283981 56284187 -186380166 - MER1B DNA MER1_type -88 209 1 1225 256 147 32 chr1 56284408 56284967 -186379386 + LTR50 LTR ERVL 129 751 -44 2055 118 7 0 chr1 56284969 56285296 -186379057 + AluSx SINE Alu 1 329 0 2125 96 0 31 chr1 56285979 56286292 -186378061 - AluSq SINE Alu 0 304 1 645 144 54 0 chr1 56287136 56287247 -186377106 + AluJb SINE Alu 1 117 -195 201 121 0 0 chr1 56287697 56287730 -186376623 + (CA)n Simple_repeat Simple_repeat 1 33 0 1318 151 13 22 chr1 56288094 56288326 -186376027 - AluJb SINE Alu -19 293 64 1359 160 46 71 chr1 56288491 56288773 -186375580 + AluJb SINE Alu 1 275 -37 411 295 120 23 chr1 56288962 56289220 -186375133 + L1M4 LINE L1 3588 3870 -2276 252 250 24 36 chr1 56289279 56289363 -186374990 + LTR67 LTR ERVL 112 194 -363 780 195 40 72 chr1 56290575 56290773 -186373580 - L1MEc LINE L1 -4831 1551 1251 1904 211 19 42 chr1 56290785 56291336 -186373017 + L1MDb LINE L1 1154 1675 -4709 961 179 18 121 chr1 56291450 56291557 -186372796 - L1MC4 LINE L1 -865 7177 7061 2225 95 3 0 chr1 56291557 56291840 -186372513 + AluSc SINE Alu 1 284 -25 961 179 18 121 chr1 56291840 56292122 -186372231 - L1MC4 LINE L1 -981 7061 6828 283 169 17 34 chr1 56292120 56292179 -186372174 - L1MC4a LINE L1 -1134 6674 6617 * 1018 224 44 52 chr1 56292221 56292628 -186371725 - L1MC4a LINE L1 -1307 6501 6098 1926 211 89 35 chr1 56292640 56293147 -186371206 - MLT1F LTR MaLR -8 534 1 2032 252 22 29 chr1 56293159 56293651 -186370702 - L1MC4a LINE L1 -1756 6052 5563 1994 140 0 3 chr1 56293651 56293943 -186370410 - AluSx SINE Alu -21 291 1 2032 252 22 29 chr1 56293943 56294082 -186370271 - L1MC4a LINE L1 -2245 5563 5425 1853 89 65 0 chr1 56294220 56294467 -186369886 - AluSg SINE Alu -47 263 1 744 196 54 88 chr1 56294467 56294727 -186369626 - L1MEc LINE L1 -5643 920 670 258 225 88 0 chr1 56294838 56294918 -186369435 - MER103 DNA DNA -1 165 79 201 133 0 0 chr1 56295159 56295189 -186369164 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 384 283 144 21 chr1 56295199 56295369 -186368984 + MIR SINE MIR 6 196 -66 854 167 0 22 chr1 56296131 56296269 -186368084 + AluJo SINE Alu 1 135 -177 1776 161 7 3 chr1 56296314 56296600 -186367753 + AluJb SINE Alu 14 300 -12 1229 166 93 20 chr1 56296964 56297266 -186367087 + MER33 DNA MER1_type 1 324 0 1289 152 136 40 chr1 56297310 56297612 -186366741 + MER2 DNA MER2_type 1 331 -14 256 292 67 22 chr1 56297781 56297870 -186366483 + L2 LINE L2 3137 3229 -43 3262 140 26 5 chr1 56298672 56299250 -186365103 + L1MB3 LINE L1 5577 6166 -17 38538 72 7 2 chr1 56299605 56305732 -186358621 - L1PA5 LINE L1 0 6154 4 222 37 0 0 chr1 56305779 56305806 -186358547 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 597 133 0 0 chr1 56305809 56305892 -186358461 - AluSg/x SINE Alu -30 282 200 231 186 17 17 chr1 56306043 56306102 -186358251 + L1ME2 LINE L1 5192 5250 -896 * 610 204 0 0 chr1 56306096 56306228 -186358125 + L1ME2 LINE L1 5850 5981 -183 484 158 0 0 chr1 56306270 56306346 -186358007 - AluS SINE Alu -236 76 1 262 138 46 46 chr1 56306346 56306411 -186357942 + L1ME2 LINE L1 6081 6145 -19 6599 9 0 0 chr1 56306430 56307205 -186357148 - L1HS LINE L1 0 6155 5381 705 266 128 3 chr1 56307429 56307726 -186356627 + L1MEc LINE L1 1633 1966 -4430 1895 96 55 4 chr1 56307728 56308000 -186356353 - AluSg SINE Alu -14 296 11 373 324 53 27 chr1 56308101 56308194 -186356159 + MLT2F LTR ERVL 14 103 -560 2241 109 6 6 chr1 56308194 56308506 -186355847 + AluSx SINE Alu 1 312 0 373 324 53 27 chr1 56308506 56308637 -186355716 + MLT2F LTR ERVL 103 244 -419 1978 202 45 31 chr1 56308661 56309240 -186355113 + L1M4 LINE L1 3699 4285 -1861 387 240 70 65 chr1 56309320 56309549 -186354804 + L1MA5 LINE L1 1160 1389 -5820 * 999 126 0 61 chr1 56309547 56309654 -186354699 + L1MA5 LINE L1 2913 3004 -4205 1519 150 16 80 chr1 56309654 56309968 -186354385 + AluJb SINE Alu 1 294 -18 999 126 0 61 chr1 56309968 56310058 -186354295 + L1MA5 LINE L1 3004 3098 -4111 2225 106 3 3 chr1 56310059 56310351 -186354002 + AluSx SINE Alu 1 292 -20 2239 116 3 3 chr1 56310351 56310662 -186353691 + AluSx SINE Alu 1 311 -1 237 65 0 0 chr1 56310667 56310698 -186353655 + (GAGAA)n Simple_repeat Simple_repeat 5 35 0 2149 113 3 7 chr1 56310714 56311014 -186353339 + AluSx SINE Alu 5 303 -9 8575 165 78 29 chr1 56311016 56311311 -186353042 + L1MA5 LINE L1 4240 4519 -2843 1453 198 39 32 chr1 56311311 56311619 -186352734 + AluJo SINE Alu 1 310 -2 8575 165 78 29 chr1 56311619 56312875 -186351478 + L1MA5 LINE L1 4519 5712 -1650 2199 132 0 0 chr1 56312875 56313179 -186351174 + AluSq SINE Alu 1 304 -9 8575 165 78 29 chr1 56313179 56314119 -186350234 + L1MA5 LINE L1 5712 6908 -454 1545 203 10 7 chr1 56314119 56314419 -186349934 + AluJo SINE Alu 12 312 0 8575 165 78 29 chr1 56314419 56314898 -186349455 + L1MA5 LINE L1 6908 7362 0 2198 207 57 11 chr1 56314903 56315448 -186348905 + L1MB3 LINE L1 5607 6176 -7 1520 109 160 12 chr1 56315473 56315729 -186348624 + AluSg SINE Alu 1 294 -16 306 261 57 57 chr1 56315732 56315889 -186348464 + L1ME3A LINE L1 5905 6061 -109 765 153 59 6 chr1 56315889 56316059 -186348294 - MLT1B LTR MaLR -48 342 164 242 269 32 11 chr1 56316077 56316170 -186348183 + L1ME3A LINE L1 6043 6137 -33 2233 113 0 3 chr1 56316676 56316977 -186347376 + AluSg SINE Alu 1 300 -10 1569 167 91 3 chr1 56316989 56317276 -186347077 + AluSx SINE Alu 1 312 0 382 299 72 0 chr1 56317836 56317933 -186346420 - L2 LINE L2 -15 3257 3154 457 262 134 12 chr1 56318564 56318728 -186345625 + MIR SINE MIR 20 203 -59 1559 65 0 0 chr1 56318728 56318913 -186345440 + AluY SINE Alu 1 185 -126 569 65 26 0 chr1 56318913 56318990 -186345363 + AluY SINE Alu 218 296 -15 730 257 31 21 chr1 56319086 56319418 -186344935 - L1MCa LINE L1 -3754 2672 2378 2127 97 0 44 chr1 56319523 56319764 -186344589 - THE1A LTR MaLR 0 355 127 2084 101 10 34 chr1 56319764 56320103 -186344250 + AluY SINE Alu 5 336 0 2127 97 0 44 chr1 56320103 56320178 -186344175 - THE1A LTR MaLR -228 127 50 871 86 8 8 chr1 56320192 56320320 -186344033 - THE1A LTR MaLR -227 128 1 11343 96 17 1 chr1 56320320 56321876 -186342477 - THE1A-int LTR MaLR 0 1580 1 2308 125 11 3 chr1 56321876 56322228 -186342125 - THE1A LTR MaLR 0 355 1 761 255 115 36 chr1 56322231 56322615 -186341738 - L1MCa LINE L1 -4256 2351 1999 1825 156 25 7 chr1 56322615 56322897 -186341456 + AluJb SINE Alu 1 287 -25 761 255 115 36 chr1 56322897 56323246 -186341107 - L1MCa LINE L1 -4608 1999 1341 444 122 232 0 chr1 56323553 56323635 -186340718 - AluJ/FLAM SINE Alu -211 101 1 2085 135 3 7 chr1 56323649 56323946 -186340407 - AluSx SINE Alu -16 296 1 295 281 73 0 chr1 56324063 56324159 -186340194 - L2 LINE L2 -22 3250 3148 293 368 43 8 chr1 56324310 56324427 -186339926 - L2 LINE L2 -16 3256 3136 461 302 321 9 chr1 56325225 56325788 -186338565 + L3 LINE CR1 822 1560 -17 255 313 0 0 chr1 56325985 56326052 -186338301 + L2 LINE L2 3246 3312 -1 5429 201 53 13 chr1 56326671 56328007 -186336346 - L1P LINE L1 -913 5233 3844 279 195 84 45 chr1 56328008 56328077 -186336276 - L1MC5 LINE L1 -181 7780 7715 2032 158 0 7 chr1 56328077 56328387 -186335966 - AluJb SINE Alu -4 308 1 279 195 84 45 chr1 56328387 56328471 -186335882 - L1MC5 LINE L1 -246 7715 7621 335 224 0 0 chr1 56328614 56328681 -186335672 - FLAM SINE Alu -10 123 57 1384 184 6 96 chr1 56329253 56329426 -186334927 - AluSx SINE Alu -5 307 120 216 0 0 0 chr1 56329426 56329450 -186334903 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1384 184 6 96 chr1 56329450 56329467 -186334886 - AluSx SINE Alu -192 120 103 1863 114 7 22 chr1 56329467 56329738 -186334615 - AluSq SINE Alu -41 272 6 1384 184 6 96 chr1 56329738 56329878 -186334475 - AluSx SINE Alu -209 103 6 427 335 48 24 chr1 56330236 56330445 -186333908 + MIR SINE MIR 30 243 -19 953 130 0 86 chr1 56330445 56330607 -186333746 + AluJo SINE Alu 1 148 -164 257 87 0 43 chr1 56330673 56330719 -186333634 + (GGGAA)n Simple_repeat Simple_repeat 2 45 0 1342 227 81 63 chr1 56330812 56331318 -186333035 - LTR40a LTR ERVL -4 515 1 1220 212 33 4 chr1 56331320 56331594 -186332759 - HERVL40 LTR ERVL -2 5528 5247 280 174 14 29 chr1 56331534 56331603 -186332750 - MER89-int LTR ERV1 -299 6502 6435 * 290 277 19 46 chr1 56331625 56331789 -186332564 - HERVL40 LTR ERVL -254 2783 2723 376 299 82 17 chr1 56332054 56332285 -186332068 - HERVL40 LTR ERVL -323 2714 2469 7220 228 40 39 chr1 56332494 56334300 -186330053 - HERVL40 LTR ERVL -688 4660 2036 1447 233 69 20 chr1 56334420 56334810 -186329543 - HERVL40 LTR ERVL -5121 409 1 1630 221 53 14 chr1 56334811 56335241 -186329112 - LTR40b LTR ERVL -2 460 14 181 148 0 0 chr1 56335289 56335316 -186329037 + L2 LINE L2 3210 3236 -36 259 319 178 15 chr1 56336133 56336268 -186328085 - L2 LINE L2 -4 3268 3112 1646 348 93 0 chr1 56336480 56336674 -186327679 - MSTB LTR MaLR -2 424 249 2278 113 23 0 chr1 56336674 56336976 -186327377 - AluSx SINE Alu -3 309 1 1646 348 93 0 chr1 56336976 56337169 -186327184 - MSTB LTR MaLR -177 249 1 192 255 0 0 chr1 56337216 56337263 -186327090 - L3b LINE CR1 -3 1580 1534 1004 197 5 5 chr1 56337265 56337453 -186326900 + MER5A DNA MER1_type 1 188 -1 935 188 42 5 chr1 56337476 56337668 -186326685 - MER20 DNA MER1_type -20 199 1 843 226 93 0 chr1 56337676 56337880 -186326473 - MER58A DNA MER1_type 0 224 2 1208 160 138 65 chr1 56338015 56338290 -186326063 - AluJo SINE Alu -17 295 1 206 279 15 15 chr1 56338293 56338367 -186325986 - MIR SINE MIR -65 143 74 863 209 60 5 chr1 56338548 56338749 -186325604 - MER58A DNA MER1_type -12 212 1 1998 141 0 10 chr1 56339099 56339404 -186324949 + AluSx SINE Alu 1 302 -10 354 283 0 11 chr1 56339421 56339513 -186324840 + MIR3 SINE MIR 85 175 -33 594 248 253 10 chr1 56339549 56339751 -186324602 - MIR SINE MIR 0 262 12 10245 58 43 14 chr1 56340235 56341595 -186322758 + SVA Other Other 11 1386 0 2198 115 0 13 chr1 56341603 56341917 -186322436 + AluSq SINE Alu 1 310 -3 2190 58 4 0 chr1 56342101 56342361 -186321992 - AluY SINE Alu -14 297 37 1424 167 25 101 chr1 56342545 56342691 -186321662 + AluJo SINE Alu 1 112 -200 2010 129 13 13 chr1 56342691 56342993 -186321360 - AluSx SINE Alu -10 302 1 1424 167 25 101 chr1 56342993 56343164 -186321189 + AluJo SINE Alu 112 294 -18 869 288 83 53 chr1 56343387 56343589 -186320764 + L1MEc LINE L1 1135 1329 -5067 1724 181 3 17 chr1 56343589 56343881 -186320472 + AluJb SINE Alu 1 288 -24 869 288 83 53 chr1 56343881 56344177 -186320176 + L1MEc LINE L1 1329 1615 -4781 2135 121 0 13 chr1 56344177 56344475 -186319878 + AluSx SINE Alu 1 294 -18 869 288 83 53 chr1 56344475 56344698 -186319655 + L1MEc LINE L1 1615 1830 -4566 1922 131 20 103 chr1 56344698 56344980 -186319373 + MER47A DNA MER2_type 1 305 -2018 2576 50 0 0 chr1 56344980 56345278 -186319075 - AluY SINE Alu -13 298 1 1922 131 20 103 chr1 56345278 56345309 -186319044 + MER47A DNA MER2_type 305 278 -2045 1692 183 0 21 chr1 56345309 56345599 -186318754 - AluJb SINE Alu -28 284 1 1922 131 20 103 chr1 56345599 56345682 -186318671 + MER47A DNA MER2_type 277 365 -1 869 288 83 53 chr1 56345682 56345792 -186318561 + L1MEc LINE L1 1830 1993 -4403 1303 178 36 7 chr1 56345881 56346190 -186318163 + MER33 DNA MER1_type 7 324 0 1192 152 43 9 chr1 56346200 56346410 -186317943 + MER20 DNA MER1_type 3 219 0 543 285 78 0 chr1 56346525 56346706 -186317647 + L1MEc LINE L1 2177 2342 -3873 2018 84 29 117 chr1 56346706 56347049 -186317304 + AluSq SINE Alu 1 313 0 543 285 78 0 chr1 56347049 56347075 -186317278 + L1MEc LINE L1 2342 2365 -3850 2019 154 3 7 chr1 56347075 56347374 -186316979 + AluSq SINE Alu 6 303 -10 543 285 78 0 chr1 56347374 56347549 -186316804 + L1MEc LINE L1 2365 2556 -3659 652 93 0 39 chr1 56347549 56347678 -186316675 + (GGAA)n Simple_repeat Simple_repeat 3 126 0 1889 250 78 3 chr1 56347718 56348373 -186315980 + L1MEc LINE L1 3555 4258 -1957 1800 167 20 0 chr1 56348514 56348808 -186315545 + AluSq SINE Alu 1 300 -13 453 158 0 0 chr1 56348808 56348890 -186315463 + L1MC4 LINE L1 7166 7247 -795 2203 135 0 0 chr1 56348890 56349202 -186315151 + AluJo SINE Alu 1 312 0 282 95 0 0 chr1 56349203 56349245 -186315108 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 288 218 39 0 chr1 56349245 56349323 -186315030 + L1MC4 LINE L1 7239 7319 -723 1954 146 152 13 chr1 56349344 56349720 -186314633 - MSTA LTR MaLR 0 428 1 1480 222 49 23 chr1 56349720 56350152 -186314201 + L1MC4 LINE L1 7455 7897 -145 236 250 47 0 chr1 56350261 56350325 -186314028 + L1MC4 LINE L1 7937 8003 -39 1715 147 42 26 chr1 56350328 56350635 -186313718 - AluJo SINE Alu 0 312 1 1146 225 42 16 chr1 56350635 56350942 -186313411 - MLT1A2 LTR MaLR -58 316 2 1027 173 0 0 chr1 56351551 56351713 -186312640 + FRAM SINE Alu 1 162 -4 1996 138 0 0 chr1 56351839 56352150 -186312203 - AluSx SINE Alu 0 313 3 1280 213 37 41 chr1 56352401 56352669 -186311684 + AluJo SINE Alu 14 280 -32 243 61 0 0 chr1 56352674 56352707 -186311646 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 22 0 0 0 chr1 56352707 56352729 -186311624 + AT_rich Low_complexity Low_complexity 1 22 0 474 266 105 33 chr1 56352774 56352858 -186311495 - MIR SINE MIR -3 259 182 2304 96 0 0 chr1 56352858 56353149 -186311204 - AluSx SINE Alu -21 291 1 474 266 105 33 chr1 56353149 56353283 -186311070 - MIR SINE MIR -80 182 27 2289 84 0 10 chr1 56353485 56353781 -186310572 + AluSq SINE Alu 1 293 -20 2576 150 52 10 chr1 56353781 56354848 -186309505 - L1PA16 LINE L1 -10 6156 4987 2504 117 38 40 chr1 56354964 56355410 -186308943 + MER65A LTR ERV1 1 445 0 653 227 82 27 chr1 56355750 56356006 -186308347 + L1MC/D LINE L1 5337 5606 -2202 6859 110 17 45 chr1 56356006 56356382 -186307971 - Tigger1 DNA MER2_type 0 2418 2033 1977 175 0 6 chr1 56356382 56356696 -186307657 - AluJo SINE Alu 0 312 1 6859 110 17 45 chr1 56356696 56357509 -186306844 - Tigger1 DNA MER2_type -385 2033 1263 1667 139 4 4 chr1 56357610 56357861 -186306492 + AluSx SINE Alu 40 290 -22 1930 151 0 13 chr1 56357907 56358206 -186306147 + AluJb SINE Alu 1 295 -17 512 370 6 6 chr1 56358399 56358572 -186305781 + MER5A DNA MER1_type 15 187 -2 575 339 6 6 chr1 56359252 56359423 -186304930 + L2 LINE L2 3102 3272 0 291 314 157 20 chr1 56359453 56359606 -186304747 - MIR SINE MIR -40 222 49 330 238 175 12 chr1 56360950 56361110 -186303243 + L2 LINE L2 2457 2642 -672 2311 113 3 0 chr1 56361245 56361547 -186302806 + AluSp SINE Alu 1 303 -10 627 327 90 30 chr1 56361713 56362312 -186302041 + HAL1 LINE L1 272 906 -1601 475 261 94 54 chr1 56362344 56362547 -186301806 - MIR SINE MIR -37 225 15 267 35 103 35 chr1 56363724 56363782 -186300571 + GA-rich Low_complexity Low_complexity 4 65 0 1275 253 118 32 chr1 56363883 56364467 -186299886 + L1ME3 LINE L1 5508 6141 -21 435 379 49 62 chr1 56364500 56365034 -186299319 + L2 LINE L2 2730 3257 -15 796 210 36 98 chr1 56366800 56367076 -186297277 - MIR SINE MIR -2 260 2 307 295 83 13 chr1 56367163 56367319 -186297034 - L3 LINE CR1 -7 1570 1404 226 222 0 0 chr1 56367349 56367394 -186296959 - Alu SINE Alu -11 291 247 678 284 61 91 chr1 56367394 56368046 -186296307 - L3 LINE CR1 -238 1339 707 2293 110 3 0 chr1 56368089 56368398 -186295955 - AluSx SINE Alu -2 310 1 834 145 8 15 chr1 56368595 56368726 -186295627 - FLAM_C SINE Alu -3 130 1 1580 174 0 21 chr1 56368833 56369114 -186295239 + AluJo SINE Alu 1 275 -37 2331 187 117 16 chr1 56369485 56370047 -186294306 - MER97b DNA MER1_type? -434 619 1 678 167 17 8 chr1 56370203 56370323 -186294030 + FLAM_A SINE Alu 2 122 -11 5697 134 25 27 chr1 56370471 56371301 -186293052 - L1MA2 LINE L1 0 6304 5474 2245 102 10 0 chr1 56371301 56371596 -186292757 - AluSx SINE Alu -14 298 1 5697 134 25 27 chr1 56371596 56371629 -186292724 - L1MA2 LINE L1 -830 5474 5442 2247 77 7 17 chr1 56371629 56371927 -186292426 - AluSg1 SINE Alu -14 295 1 5697 134 25 27 chr1 56371927 56372873 -186291480 - L1MA2 LINE L1 -862 5442 4391 2364 93 0 3 chr1 56372873 56373175 -186291178 - AluSg SINE Alu -9 301 1 5697 134 25 27 chr1 56373175 56373434 -186290919 - L1MA2 LINE L1 -1913 4391 4133 1659 197 138 5 chr1 56373645 56374081 -186290272 - L1MD3 LINE L1 -52 7943 7450 370 352 111 17 chr1 56374190 56374366 -186289987 + MIR SINE MIR 2 187 -57 2205 92 7 0 chr1 56374376 56374659 -186289694 + AluSg SINE Alu 1 285 -25 387 0 0 0 chr1 56374660 56374703 -186289650 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2205 103 3 0 chr1 56374820 56375111 -186289242 + AluSc SINE Alu 1 292 -17 1268 172 4 26 chr1 56375115 56375347 -186289006 + AluJb SINE Alu 86 312 0 1678 85 0 18 chr1 56375722 56375945 -186288408 - AluSq SINE Alu -94 219 1 34 0 0 0 chr1 56383085 56383119 -186281234 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr1 56389947 56389982 -186274371 + AT_rich Low_complexity Low_complexity 1 35 0 384 305 40 13 chr1 56390868 56391019 -186273334 - MIR SINE MIR -56 206 52 411 281 171 0 chr1 56391123 56391287 -186273066 + MIR SINE MIR 69 260 -2 322 293 167 13 chr1 56391768 56391918 -186272435 + MIR SINE MIR 3 175 -87 22 35 0 0 chr1 56391918 56391947 -186272406 + AT_rich Low_complexity Low_complexity 1 29 0 387 301 139 52 chr1 56392446 56392642 -186271711 + L1MEd LINE L1 3 181 -5938 1427 185 75 72 chr1 56392642 56393031 -186271322 - MLT1B LTR MaLR 0 390 1 387 301 139 52 chr1 56393031 56393180 -186271173 + L1MEd LINE L1 181 378 -5741 * 736 185 29 29 chr1 56393179 56393345 -186271008 - L1M4 LINE L1 -798 5348 5180 714 185 15 0 chr1 56393345 56393475 -186270878 - FLAM_A SINE Alu -1 132 1 736 185 29 29 chr1 56393475 56393513 -186270840 - L1M4 LINE L1 -965 5181 5144 1985 151 64 7 chr1 56393542 56393947 -186270406 + L1MB7 LINE L1 5757 6184 0 366 288 120 0 chr1 56394076 56394201 -186270152 + L2 LINE L2 3166 3305 -8 1169 243 121 74 chr1 56394296 56394560 -186269793 + L1MC4 LINE L1 7235 7485 -557 2200 97 0 13 chr1 56394560 56394858 -186269495 - AluSx SINE Alu -8 304 11 1169 243 121 74 chr1 56394858 56394871 -186269482 + L1MC4 LINE L1 7485 7496 -546 2353 76 3 0 chr1 56394871 56395162 -186269191 - AluSp SINE Alu -16 297 6 1169 243 121 74 chr1 56395162 56395454 -186268899 + L1MC4 LINE L1 7496 7832 -210 340 188 297 0 chr1 56395452 56395590 -186268763 + L1M4 LINE L1 3193 3371 -2775 * 1850 236 78 42 chr1 56395608 56395841 -186268512 + L1M4 LINE L1 3475 3698 -2448 1948 125 10 34 chr1 56395841 56396168 -186268185 - AluSx SINE Alu 0 312 2 1850 236 78 42 chr1 56396168 56396475 -186267878 + L1M4 LINE L1 3698 4044 -2102 2209 113 0 0 chr1 56396475 56396768 -186267585 - AluSg SINE Alu -17 293 1 1850 236 78 42 chr1 56396768 56396867 -186267486 + L1M4 LINE L1 4044 4138 -2008 368 143 0 2 chr1 56396917 56396984 -186267369 + L1ME LINE L1 5600 5665 -463 381 262 67 128 chr1 56396985 56397283 -186267070 + L2 LINE L2 2262 2541 -773 2040 126 3 0 chr1 56397849 56398142 -186266211 - AluSx SINE Alu -18 294 1 2328 87 3 6 chr1 56398177 56398489 -186265864 - AluY SINE Alu 0 311 1 38 22 0 0 chr1 56399013 56399058 -186265295 + AT_rich Low_complexity Low_complexity 1 45 0 507 214 9 105 chr1 56399095 56399172 -186265181 + LTR33 LTR ERVL 332 415 -106 2361 93 0 10 chr1 56399172 56399485 -186264868 - AluSg SINE Alu 0 310 1 507 214 9 105 chr1 56399485 56399533 -186264820 + LTR33 LTR ERVL 415 466 -55 2513 80 0 0 chr1 56399533 56399845 -186264508 - AluSx SINE Alu 0 312 1 507 214 9 105 chr1 56399845 56399928 -186264425 + LTR33 LTR ERVL 466 521 0 395 236 138 8 chr1 56400148 56400271 -186264082 + L2 LINE L2 3163 3301 -12 361 250 87 39 chr1 56400273 56400377 -186263976 - L2 LINE L2 -1 3312 3204 252 204 167 45 chr1 56400446 56400578 -186263775 + MER103 DNA DNA 3 150 -16 661 176 0 78 chr1 56400624 56400766 -186263587 + FLAM_C SINE Alu 1 131 -12 1947 102 4 0 chr1 56400973 56401227 -186263126 + AluSx SINE Alu 41 295 -17 726 154 16 8 chr1 56401522 56401645 -186262708 - FLAM_C SINE Alu -7 126 3 352 234 178 1 chr1 56401645 56401771 -186262582 + MIR SINE MIR 55 206 -56 4724 144 99 92 chr1 56401782 56402410 -186261943 + L1MC3 LINE L1 6472 7198 -587 249 253 58 11 chr1 56402410 56402497 -186261856 + MLT1F1 LTR MaLR 35 125 -442 4724 144 99 92 chr1 56402497 56402897 -186261456 + L1MC3 LINE L1 7198 7594 -191 1115 111 29 29 chr1 56402897 56403104 -186261249 + L1MC2 LINE L1 6137 6343 -1 453 258 58 63 chr1 56403257 56403447 -186260906 + MIR SINE MIR 2 190 -72 1220 302 166 14 chr1 56403548 56404193 -186260160 - L2 LINE L2 -939 2375 1633 198 71 0 0 chr1 56404231 56404259 -186260094 + (TTA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr1 56405050 56405072 -186259281 + AT_rich Low_complexity Low_complexity 1 22 0 3128 154 21 24 chr1 56405107 56405731 -186258622 + L1MB3 LINE L1 5555 6176 -7 2309 87 3 0 chr1 56406226 56406537 -186257816 + AluSp SINE Alu 1 312 0 222 37 0 0 chr1 56406902 56406929 -186257424 + (T)n Simple_repeat Simple_repeat 1 27 0 8031 134 13 2 chr1 56407037 56408284 -186256069 - Tigger1 DNA MER2_type -1155 1263 4 4877 182 82 17 chr1 56408290 56408642 -186255711 - L1 LINE L1 -1218 4928 4600 2319 96 3 0 chr1 56408642 56408945 -186255408 - AluSp SINE Alu -9 304 1 4877 182 82 17 chr1 56408945 56409683 -186254670 - L1 LINE L1 -1546 4600 3768 956 150 48 12 chr1 56459774 56459941 -186204412 - AluJo SINE Alu -11 301 129 447 175 105 9 chr1 56459942 56460056 -186204297 - L1MB3 LINE L1 -58 6125 6001 831 148 0 16 chr1 56460067 56460195 -186204158 - AluJo SINE Alu -185 127 2 1518 158 26 4 chr1 56460212 56460477 -186203876 - AluJo SINE Alu -41 271 1 2087 125 3 0 chr1 56460484 56460787 -186203566 - AluSp SINE Alu -9 304 1 2063 108 3 3 chr1 56461027 56461322 -186203031 + AluSg SINE Alu 7 301 -9 217 350 0 0 chr1 56461376 56461436 -186202917 - L2 LINE L2 -87 3185 3126 1750 146 7 4 chr1 56461695 56462005 -186202348 - AluSx SINE Alu 0 311 1 301 241 51 0 chr1 56462044 56462123 -186202230 - MIR SINE MIR 0 262 180 280 313 47 8 chr1 56462237 56462365 -186201988 - MIR SINE MIR -1 261 129 2157 205 17 0 chr1 56462380 56462794 -186201559 - MER63 DNA MER1_type -4 1056 636 534 184 10 10 chr1 56462944 56463047 -186201306 + U13 snRNA snRNA 2 104 0 1007 177 0 0 chr1 56463193 56463404 -186200949 - AluJo SINE Alu 0 312 109 270 223 15 15 chr1 56463538 56463614 -186200739 - MIR SINE MIR -67 141 66 41 0 0 0 chr1 56463755 56463796 -186200557 + AT_rich Low_complexity Low_complexity 1 41 0 2299 116 0 6 chr1 56463796 56464124 -186200229 - LTR17 LTR ERV1 -454 326 1 2366 62 3 0 chr1 56464124 56464415 -186199938 - HERV17 LTR ERV1 0 8626 8335 326 26 0 0 chr1 56464405 56464444 -186199909 - HERV17 LTR ERV1 -1078 7548 7510 * 5091 35 30 0 chr1 56464437 56464822 -186199531 - HERV17 LTR ERV1 -2607 6019 5608 195 42 0 0 chr1 56464822 56464846 -186199507 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 5091 35 30 0 chr1 56464846 56465057 -186199296 - HERV17 LTR ERV1 -3018 5608 5405 * 11016 45 18 1 chr1 56465036 56466340 -186198013 - HERV17 LTR ERV1 -4872 3754 2430 6901 52 3 6 chr1 56466323 56467169 -186197184 - HERV17 LTR ERV1 -6610 2016 1173 * 1203 75 0 0 chr1 56467172 56467319 -186197034 - HERV17 LTR ERV1 -5917 2709 2563 1047 85 0 0 chr1 56467334 56467464 -186196889 - AluSq/x SINE Alu -183 130 1 644 118 20 20 chr1 56467541 56467693 -186196660 + Charlie1 DNA MER1_type 2520 2671 -90 1235 130 40 5 chr1 56467726 56467926 -186196427 - AluJo SINE Alu -40 272 66 706 113 33 119 chr1 56468026 56468128 -186196225 + Tigger3(Golem) DNA MER2_type 99 185 -1046 1888 110 14 27 chr1 56468128 56468420 -186195933 - AluSq SINE Alu -25 288 1 706 113 33 119 chr1 56468420 56468468 -186195885 + Tigger3(Golem) DNA MER2_type 185 236 -995 * 1962 115 233 10 chr1 56468462 56468879 -186195474 + Tigger3(Golem) DNA MER2_type 2472 2981 -48 185 339 71 16 chr1 56468911 56469038 -186195315 - L2 LINE L2 -307 3006 2873 2210 98 0 0 chr1 56469127 56469414 -186194939 - AluSc SINE Alu -22 287 1 258 267 0 0 chr1 56469687 56469747 -186194606 - Charlie8 DNA MER1_type -1 2416 2357 689 226 42 26 chr1 56469752 56469942 -186194411 - Charlie8 DNA MER1_type -2197 220 28 266 330 26 9 chr1 56471378 56471493 -186192860 + MIR SINE MIR 33 149 -59 488 286 135 63 chr1 56472988 56473306 -186191047 - L2 LINE L2 -1 3271 2931 355 246 0 88 chr1 56473470 56473584 -186190769 + MIR3 SINE MIR 94 197 -11 2207 87 14 0 chr1 56474041 56474328 -186190025 + AluSx SINE Alu 1 291 -21 1762 134 0 69 chr1 56474335 56474655 -186189698 + AluJo SINE Alu 1 298 -14 922 180 62 11 chr1 56474744 56474922 -186189431 + AluJo SINE Alu 1 187 -125 6457 86 22 4 chr1 56475027 56475989 -186188364 + L1M1 LINE L1 2241 3219 -4346 5278 130 42 11 chr1 56475969 56476461 -186187892 + L1MA5A LINE L1 5291 5766 -531 * 2100 124 17 0 chr1 56476461 56476759 -186187594 + AluSx SINE Alu 1 303 -9 5278 130 42 11 chr1 56476759 56477243 -186187110 + L1MA5A LINE L1 5766 6297 0 2090 144 3 3 chr1 56477249 56477561 -186186792 + AluSx SINE Alu 1 312 0 1856 172 0 0 chr1 56477562 56477750 -186186603 + L1MA4 LINE L1 5770 5949 -351 742 167 0 0 chr1 56477750 56477888 -186186465 + L1MA4 LINE L1 6156 6293 -7 1856 172 0 0 chr1 56477888 56478124 -186186229 + L1MA4 LINE L1 5949 6174 -126 2593 46 0 0 chr1 56478124 56478427 -186185926 + AluY SINE Alu 1 303 -8 2099 131 0 41 chr1 56478432 56478752 -186185601 + AluJb SINE Alu 1 307 -5 1856 172 0 0 chr1 56478752 56478862 -186185491 + L1MA4 LINE L1 6177 6294 -6 185 257 57 14 chr1 56479210 56479280 -186185073 - L2 LINE L2 -1927 1387 1315 386 164 63 138 chr1 56479717 56479788 -186184565 + LTR45B LTR ERV1 343 397 -92 1701 193 0 22 chr1 56479788 56480099 -186184254 + AluJb SINE Alu 1 304 -8 386 164 63 138 chr1 56480099 56480186 -186184167 + LTR45B LTR ERV1 397 489 0 2219 114 7 0 chr1 56480232 56480530 -186183823 + AluSq SINE Alu 1 300 -13 391 237 53 8 chr1 56480726 56480857 -186183496 - L1M4 LINE L1 -3146 3000 2864 442 231 0 0 chr1 56480884 56480988 -186183365 - L1M4 LINE L1 -3423 2723 2620 718 207 125 43 chr1 56480995 56481227 -186183126 - MLT1J1 LTR MaLR -180 266 16 1007 269 113 19 chr1 56481235 56482026 -186182327 - L1M4 LINE L1 -2537 3609 2745 1785 197 0 0 chr1 56482026 56482313 -186182040 + AluJo SINE Alu 1 290 -22 351 0 0 0 chr1 56482313 56482352 -186182001 + (CA)n Simple_repeat Simple_repeat 2 40 0 1785 197 0 0 chr1 56482352 56482374 -186181979 + AluJo SINE Alu 289 310 -2 2081 138 0 3 chr1 56482433 56482737 -186181616 - AluSx SINE Alu -9 303 1 253 328 62 23 chr1 56482754 56482882 -186181471 - MIR SINE MIR -57 205 73 186 379 0 39 chr1 56482992 56483095 -186181258 + L2 LINE L2 3210 3308 -5 180 222 91 81 chr1 56483520 56483619 -186180734 - L2 LINE L2 -1529 1785 1686 2020 119 23 29 chr1 56483855 56484165 -186180188 - AluSx SINE Alu 0 312 5 210 283 43 65 chr1 56484438 56484530 -186179823 - L2 LINE L2 -2 3311 3222 22 56 0 0 chr1 56484543 56484579 -186179774 + AT_rich Low_complexity Low_complexity 1 36 0 223 304 0 0 chr1 56484720 56484776 -186179577 - MIR3 SINE MIR -21 187 132 24 32 0 0 chr1 56485097 56485128 -186179225 + AT_rich Low_complexity Low_complexity 1 31 0 1107 180 0 43 chr1 56485340 56485551 -186178802 + AluJo SINE Alu 81 282 -30 2303 101 0 3 chr1 56485663 56485959 -186178394 - AluSc SINE Alu -14 295 1 717 160 0 0 chr1 56485993 56486099 -186178254 + FLAM_A SINE Alu 4 109 -33 656 140 28 0 chr1 56486124 56486231 -186178122 + HY1 scRNA scRNA 1 110 -2 26 64 0 0 chr1 56486357 56486404 -186177949 + AT_rich Low_complexity Low_complexity 1 47 0 420 175 52 10 chr1 56486540 56486637 -186177716 - L1ME3A LINE L1 -49 6121 6021 1618 223 67 16 chr1 56486656 56487212 -186177141 - L1ME3A LINE L1 -274 5896 5313 * 5597 137 41 6 chr1 56487200 56488882 -186175471 - L1MA4 LINE L1 -2 6298 4562 671 255 21 16 chr1 56489013 56489201 -186175152 + MIR SINE MIR 70 258 -4 2115 116 23 0 chr1 56489589 56489891 -186174462 + AluSx SINE Alu 1 309 -3 1651 174 9 47 chr1 56490265 56490443 -186173910 - AluJo SINE Alu -3 309 147 2065 100 43 0 chr1 56490443 56490722 -186173631 - AluSx SINE Alu -21 291 1 1651 174 9 47 chr1 56490722 56490860 -186173493 - AluJo SINE Alu -165 147 5 2450 80 3 0 chr1 56491710 56492021 -186172332 - AluSx SINE Alu 0 312 1 37 0 0 0 chr1 56492260 56492297 -186172056 + AT_rich Low_complexity Low_complexity 1 37 0 1954 146 0 3 chr1 56492304 56492592 -186171761 + AluSq SINE Alu 1 287 -26 207 0 0 0 chr1 56492592 56492615 -186171738 + (CATA)n Simple_repeat Simple_repeat 2 24 0 354 265 106 45 chr1 56492759 56492891 -186171462 - L2 LINE L2 0 3313 3174 541 338 94 5 chr1 56492891 56493213 -186171140 - L2 LINE L2 -248 3065 2720 361 230 142 0 chr1 56493222 56493335 -186171018 - MIR SINE MIR -2 260 132 2030 141 3 0 chr1 56493343 56493633 -186170720 + AluSx SINE Alu 1 291 -21 2067 177 94 55 chr1 56493680 56493965 -186170388 - L1ME2 LINE L1 -3 6161 5889 1994 115 25 0 chr1 56493965 56494244 -186170109 + AluSx SINE Alu 1 286 -26 2067 177 94 55 chr1 56494244 56494574 -186169779 - L1ME2 LINE L1 -275 5889 5522 703 322 62 0 chr1 56494592 56494850 -186169503 - L2 LINE L2 -606 2708 2435 482 292 69 108 chr1 56494956 56495218 -186169135 + L2 LINE L2 2456 2727 -545 2238 117 3 0 chr1 56495218 56495516 -186168837 - AluSx SINE Alu -13 299 1 482 292 69 108 chr1 56495516 56496106 -186168247 + L2 LINE L2 2727 3272 0 2388 107 23 13 chr1 56496239 56496632 -186167721 - L1MC1 LINE L1 -146 6187 5791 2125 136 0 19 chr1 56496807 56497117 -186167236 - AluSx SINE Alu -3 309 6 22 35 0 0 chr1 56497536 56497565 -186166788 + AT_rich Low_complexity Low_complexity 1 29 0 180 327 80 60 chr1 56498065 56498264 -186166089 - L2 LINE L2 -4 3309 3107 369 399 106 36 chr1 56498387 56498412 -186165941 - L2 LINE L2 -1 3271 3249 1718 182 7 27 chr1 56498412 56498709 -186165644 + AluJo SINE Alu 1 291 -21 369 399 106 36 chr1 56498709 56499097 -186165256 - L2 LINE L2 -23 3249 2829 972 218 71 22 chr1 56499175 56499400 -186164953 + MIR SINE MIR 5 240 -22 232 377 0 0 chr1 56499543 56499620 -186164733 - L2 LINE L2 0 3313 3237 488 309 18 48 chr1 56499699 56499864 -186164489 - L2 LINE L2 -2 3270 3111 2994 99 14 34 chr1 56499874 56500369 -186163984 - L1MA8 LINE L1 0 6291 5807 296 262 48 104 chr1 56500645 56501057 -186163296 - L1ME3A LINE L1 -9 6161 5773 667 283 10 5 chr1 56501122 56501327 -186163026 - L1ME3A LINE L1 -524 5642 5437 5194 159 36 19 chr1 56501345 56501834 -186162519 - L1MC1 LINE L1 -17 6316 5837 2376 116 63 34 chr1 56501834 56502249 -186162104 - MSTC LTR MaLR 0 428 2 5194 159 36 19 chr1 56502249 56502777 -186161576 - L1MC1 LINE L1 -496 5837 5281 204 179 0 0 chr1 56502831 56502870 -186161483 + (CA)n Simple_repeat Simple_repeat 2 40 0 320 167 0 0 chr1 56502904 56502958 -186161395 - L1MC1 LINE L1 -891 5255 5202 2224 102 7 0 chr1 56502980 56503284 -186161069 - AluSx SINE Alu -6 306 1 985 185 107 98 chr1 56503312 56503658 -186160695 - MER66A LTR ERV1 0 478 130 231 224 35 86 chr1 56503673 56503789 -186160564 - MER41B LTR ERV1 -385 250 141 1580 151 47 7 chr1 56503821 56504100 -186160253 - MER41B-int LTR ERV1 0 6676 6387 841 149 53 36 chr1 56504100 56504430 -186159923 - MER66-int LTR ERV1 -1752 4924 4531 964 164 88 156 chr1 56504499 56504779 -186159574 - LTR45B LTR ERV1 0 489 258 888 144 0 0 chr1 56504779 56504911 -186159442 + FLAM_C SINE Alu 2 133 0 964 164 88 156 chr1 56504911 56505143 -186159210 - LTR45B LTR ERV1 -231 258 12 1685 151 53 35 chr1 56505177 56505461 -186158892 - AluJo SINE Alu -23 289 1 1790 208 34 9 chr1 56505504 56505951 -186158402 - L1MD3 LINE L1 -1 7994 7537 2110 239 75 47 chr1 56505984 56506183 -186158170 - L1ME2 LINE L1 -1 6163 5971 2209 109 10 0 chr1 56506183 56506487 -186157866 - AluSq SINE Alu -5 308 2 2110 239 75 47 chr1 56506487 56506779 -186157574 - L1ME2 LINE L1 -193 5971 5689 2293 119 0 3 chr1 56506779 56507091 -186157262 - AluSx SINE Alu -1 311 1 2110 239 75 47 chr1 56507091 56507312 -186157041 - L1ME2 LINE L1 -475 5689 5476 1963 141 0 3 chr1 56507312 56507595 -186156758 + AluSx SINE Alu 1 282 -30 213 65 0 0 chr1 56507598 56507629 -186156724 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 2110 239 75 47 chr1 56507629 56507736 -186156617 - L1ME2 LINE L1 -689 5475 5315 447 200 0 0 chr1 56507755 56507883 -186156470 - AluSx SINE Alu 0 309 202 273 172 254 74 chr1 56507993 56508018 -186156335 - MER44D DNA MER2_type -2077 414 395 2383 78 3 0 chr1 56508018 56508313 -186156040 + AluSp SINE Alu 1 296 -17 273 172 254 74 chr1 56508313 56508409 -186155944 - MER44D DNA MER2_type -2096 395 1 1535 123 0 0 chr1 56511881 56512085 -186152268 - AluSx SINE Alu -108 204 1 298 95 0 0 chr1 56512732 56512774 -186151579 + FLAM_A SINE Alu 80 121 -12 820 211 7 0 chr1 56512978 56513130 -186151223 - AluJb SINE Alu -23 289 137 202 304 252 26 chr1 56513325 56513440 -186150913 + MIR SINE MIR 51 191 -71 2168 125 0 0 chr1 56514385 56514680 -186149673 + AluSx SINE Alu 1 295 -17 1725 184 109 3 chr1 56514724 56515083 -186149270 + MER68 LTR ERV1 165 561 -1 1200 184 40 0 chr1 56515225 56515448 -186148905 - AluJo SINE Alu -78 234 3 358 279 29 19 chr1 56515465 56515569 -186148784 + L2 LINE L2 3207 3311 -2 1800 145 45 3 chr1 56515654 56515944 -186148409 + AluJb SINE Alu 2 303 -9 333 252 157 34 chr1 56516250 56516397 -186147956 + MIR SINE MIR 10 174 -88 1028 99 14 0 chr1 56516421 56516562 -186147791 + AluSg/x SINE Alu 156 298 -12 21 0 0 0 chr1 56516959 56516980 -186147373 + AT_rich Low_complexity Low_complexity 1 21 0 2220 91 10 36 chr1 56517074 56517382 -186146971 - AluSx SINE Alu -12 300 1 207 318 16 0 chr1 56517909 56517972 -186146381 + MIR3 SINE MIR 134 197 -11 207 0 0 0 chr1 56518075 56518098 -186146255 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 279 0 0 0 chr1 56518097 56518128 -186146225 + (TA)n Simple_repeat Simple_repeat 2 32 0 1978 155 0 19 chr1 56518128 56518444 -186145909 - AluJb SINE Alu -2 310 1 1050 147 76 22 chr1 56518521 56518746 -186145607 - L1MB8 LINE L1 -18 6160 5924 691 203 114 5 chr1 56518796 56518998 -186145355 - Tigger1 DNA MER2_type -2194 224 1 1216 139 188 12 chr1 56519001 56519325 -186145028 - L1MB8 LINE L1 -258 5920 5540 255 234 31 0 chr1 56519342 56519406 -186144947 + L1MB7 LINE L1 6073 6138 -46 387 229 93 0 chr1 56519411 56519529 -186144824 - L1MB8 LINE L1 -659 5525 5397 1056 198 89 56 chr1 56519534 56519584 -186144769 - L1MB8 LINE L1 -876 5270 5223 1466 151 4 79 chr1 56519584 56519873 -186144480 + AluSx SINE Alu 37 305 0 1056 198 89 56 chr1 56519873 56520179 -186144174 - L1MB8 LINE L1 -923 5223 4901 267 75 0 0 chr1 56520218 56520258 -186144095 + AluJb SINE Alu 85 124 -178 1494 150 4 8 chr1 56520260 56520500 -186143853 + AluSx SINE Alu 1 239 -73 1294 85 0 0 chr1 56520564 56520728 -186143625 + AluY SINE Alu 136 299 -12 813 87 0 0 chr1 56520751 56520855 -186143498 + AluSg/x SINE Alu 174 277 -33 374 195 156 31 chr1 56521047 56521175 -186143178 - Charlie4 DNA MER1_type 0 1961 1818 25 31 0 0 chr1 56521482 56521514 -186142839 + AT_rich Low_complexity Low_complexity 1 32 0 402 230 128 31 chr1 56522074 56522300 -186142053 + L1ME3 LINE L1 4216 4463 -1683 184 196 239 0 chr1 56522936 56522982 -186141371 - L2 LINE L2 0 3272 3216 * 268 286 80 9 chr1 56522952 56523064 -186141289 - MIR SINE MIR -20 242 123 1043 178 42 19 chr1 56523119 56523332 -186141021 - MER20 DNA MER1_type -1 218 1 566 167 133 0 chr1 56524115 56524235 -186140118 + Tigger7 DNA MER2_type 1 136 -569 2262 123 3 0 chr1 56524262 56524572 -186139781 + AluSq SINE Alu 1 311 -2 505 30 27 19 chr1 56524586 56524658 -186139695 + L1P4 LINE L1 5413 5473 -688 1858 166 7 10 chr1 56524658 56524965 -186139388 + AluSx SINE Alu 1 306 -6 505 30 27 19 chr1 56524965 56524979 -186139374 + L1P4 LINE L1 5473 5485 -676 1300 172 112 16 chr1 56524993 56525296 -186139057 + L1MCa LINE L1 323 654 -5772 3615 158 39 27 chr1 56525296 56525442 -186138911 + L1MC1 LINE L1 5414 5557 -787 2142 98 7 7 chr1 56525442 56525754 -186138599 + AluSx SINE Alu 1 312 0 3615 158 39 27 chr1 56525754 56526376 -186137977 + L1MC1 LINE L1 5557 6185 -159 1446 233 54 15 chr1 56526379 56526770 -186137583 + L1ME3 LINE L1 4579 4984 -1162 1892 155 14 0 chr1 56526859 56527156 -186137197 + AluJo SINE Alu 1 301 -11 1469 158 73 18 chr1 56527548 56527653 -186136700 + AluSx SINE Alu 15 113 -199 2166 122 0 16 chr1 56527653 56527964 -186136389 + AluSx SINE Alu 1 306 -6 1469 158 73 18 chr1 56527964 56528130 -186136223 + AluSx SINE Alu 113 301 -11 861 164 0 0 chr1 56528435 56528563 -186135790 - FLAM_C SINE Alu -4 129 2 1683 182 14 7 chr1 56528876 56529173 -186135180 - AluJo SINE Alu -13 299 1 493 187 16 88 chr1 56529236 56529292 -186135061 + L1ME3 LINE L1 5276 5334 -830 2034 84 11 11 chr1 56529292 56529565 -186134788 + AluSg SINE Alu 2 274 -36 493 187 16 88 chr1 56529565 56529579 -186134774 + L1ME3 LINE L1 5334 5347 -817 279 0 0 0 chr1 56529579 56529610 -186134743 + (CA)n Simple_repeat Simple_repeat 2 32 0 493 187 16 88 chr1 56529610 56529720 -186134633 + L1ME3 LINE L1 5347 5444 -720 1376 139 52 24 chr1 56529720 56529786 -186134567 - Tigger2 DNA MER2_type 0 2718 2655 1610 192 3 51 chr1 56529786 56530098 -186134255 - AluSq SINE Alu -16 297 1 1376 139 52 24 chr1 56530098 56530282 -186134071 - Tigger2 DNA MER2_type -63 2655 2461 2338 113 7 0 chr1 56530309 56530619 -186133734 - AluSx SINE Alu 0 312 1 771 164 14 14 chr1 56530619 56530759 -186133594 - AluJo SINE Alu -171 141 2 673 127 114 19 chr1 56530761 56530919 -186133434 - Tigger2 DNA MER2_type -2455 263 91 484 217 0 9 chr1 56531863 56531969 -186132384 - Tigger2 DNA MER2_type -2613 105 1 1043 191 61 8 chr1 56532022 56532268 -186132085 + L1MA9 LINE L1 6054 6312 0 464 246 51 8 chr1 56532274 56532392 -186131961 + L1ME3 LINE L1 5470 5592 -572 233 228 79 40 chr1 56532447 56532548 -186131805 + L1MC4 LINE L1 7928 8032 -10 578 263 136 25 chr1 56532568 56532811 -186131542 + L1ME3 LINE L1 5595 5864 -306 363 239 8 60 chr1 56532834 56532968 -186131385 + L1ME3 LINE L1 5926 6052 -110 577 167 78 0 chr1 56533021 56533123 -186131230 + FLAM_C SINE Alu 2 111 -32 225 94 0 0 chr1 56533127 56533159 -186131194 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 908 210 173 15 chr1 56533308 56533579 -186130774 + MER2 DNA MER2_type 26 339 -6 2205 85 19 10 chr1 56533914 56534221 -186130132 + AluSx SINE Alu 1 310 -2 479 104 0 0 chr1 56534249 56534326 -186130027 + AluSp/q SINE Alu 236 312 -1 723 176 0 37 chr1 56534825 56534961 -186129392 + FLAM_C SINE Alu 1 131 -2 1051 179 0 0 chr1 56535037 56535205 -186129148 + FAM SINE Alu 2 169 -6 1036 143 46 23 chr1 56535411 56535586 -186128767 - AluJo SINE Alu -5 307 129 455 175 105 9 chr1 56535587 56535701 -186128652 - L1MB3 LINE L1 -58 6125 6001 846 147 0 16 chr1 56535712 56535841 -186128512 - AluJo SINE Alu -185 127 1 1631 158 26 4 chr1 56535857 56536122 -186128231 - AluJo SINE Alu -41 271 1 2208 125 3 0 chr1 56536129 56536432 -186127921 - AluSp SINE Alu -9 304 1 2065 120 3 3 chr1 56536672 56536956 -186127397 + AluSg SINE Alu 7 290 -20 1394 158 0 0 chr1 56536967 56537169 -186127184 + AluJo SINE Alu 5 206 -106 880 211 6 0 chr1 56537192 56537353 -186127000 + FRAM SINE Alu 1 162 -4 2228 50 43 18 chr1 56537742 56538049 -186126304 + AluY SINE Alu 1 311 0 228 367 70 33 chr1 56538405 56538620 -186125733 - L2 LINE L2 -243 3029 2807 2081 122 0 3 chr1 56538677 56538988 -186125365 + AluSx SINE Alu 1 310 0 711 156 49 0 chr1 56539656 56539778 -186124575 + FLAM_C SINE Alu 1 128 -5 768 122 7 48 chr1 56539923 56540070 -186124283 - FLAM_C SINE Alu -1 142 2 264 192 26 77 chr1 56540213 56540291 -186124062 - MIR SINE MIR -185 77 4 882 229 0 0 chr1 56540976 56541146 -186123207 + FAM SINE Alu 1 170 -5 607 188 54 9 chr1 56541163 56541275 -186123078 + FLAM_A SINE Alu 1 117 -16 24 0 0 0 chr1 56541275 56541299 -186123054 + AT_rich Low_complexity Low_complexity 1 24 0 1752 168 41 0 chr1 56541299 56541590 -186122763 + AluSx SINE Alu 1 303 -9 751 277 106 26 chr1 56541781 56542410 -186121943 - L2 LINE L2 0 3313 2621 560 222 78 24 chr1 56542686 56542853 -186121500 + AluJo SINE Alu 122 297 -15 442 114 14 14 chr1 56543253 56543323 -186121030 + FLAM SINE Alu 49 118 -25 2274 101 0 14 chr1 56543387 56543684 -186120669 + AluSx SINE Alu 2 294 -18 260 288 95 78 chr1 56543971 56544318 -186120035 - L2 LINE L2 -18 3254 2902 351 65 0 0 chr1 56544945 56544991 -186119362 + (TA)n Simple_repeat Simple_repeat 1 46 0 29 0 0 0 chr1 56545940 56545969 -186118384 + GC_rich Low_complexity Low_complexity 1 29 0 261 264 0 0 chr1 56546008 56546080 -186118273 + (CCG)n Simple_repeat Simple_repeat 3 74 0 643 307 111 19 chr1 56546604 56546982 -186117371 + L2 LINE L2 2565 2977 -337 2039 120 0 30 chr1 56547703 56548004 -186116349 + AluSx SINE Alu 1 292 -20 706 136 7 26 chr1 56548010 56548165 -186116188 + (GAAA)n Simple_repeat Simple_repeat 4 155 0 27 29 0 0 chr1 56548315 56548349 -186116004 + AT_rich Low_complexity Low_complexity 1 34 0 1680 149 42 17 chr1 56548388 56548676 -186115677 - AluJo SINE Alu -17 295 1 2288 105 0 10 chr1 56548704 56549010 -186115343 - AluSq SINE Alu -10 303 1 2324 107 0 0 chr1 56549139 56549437 -186114916 + AluSg SINE Alu 1 298 -12 200 350 0 0 chr1 56549494 56549554 -186114799 - L2 LINE L2 -87 3185 3126 1869 146 7 4 chr1 56549813 56550123 -186114230 - AluSx SINE Alu 0 311 1 265 241 51 0 chr1 56550162 56550241 -186114112 - MIR SINE MIR 0 262 180 241 234 47 0 chr1 56550419 56550483 -186113870 - MIR SINE MIR -67 195 129 2183 205 17 0 chr1 56550498 56550912 -186113441 - MER63 DNA MER1_type -4 1057 637 636 173 0 0 chr1 56551060 56551164 -186113189 + U13 snRNA snRNA 1 104 0 1074 167 0 11 chr1 56551316 56551527 -186112826 - AluJo SINE Alu 0 312 109 245 206 16 16 chr1 56551661 56551724 -186112629 - MIR SINE MIR -122 140 78 41 0 0 0 chr1 56551878 56551919 -186112434 + AT_rich Low_complexity Low_complexity 1 41 0 2298 116 0 6 chr1 56551919 56552247 -186112106 - LTR17 LTR ERV1 -454 326 1 2353 62 3 0 chr1 56552247 56552538 -186111815 - HERV17 LTR ERV1 0 8626 8335 324 26 0 0 chr1 56552528 56552567 -186111786 - HERV17 LTR ERV1 -1078 7548 7510 * 5086 35 30 0 chr1 56552560 56552945 -186111408 - HERV17 LTR ERV1 -2607 6019 5608 195 42 0 0 chr1 56552945 56552969 -186111384 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 5086 35 30 0 chr1 56552969 56553180 -186111173 - HERV17 LTR ERV1 -3018 5608 5405 * 10987 45 18 1 chr1 56553159 56554463 -186109890 - HERV17 LTR ERV1 -4872 3754 2430 6885 53 3 6 chr1 56554446 56555292 -186109061 - HERV17 LTR ERV1 -6610 2016 1173 * 1204 75 0 0 chr1 56555295 56555442 -186108911 - HERV17 LTR ERV1 -5917 2709 2563 1107 85 0 0 chr1 56555457 56555587 -186108766 - AluSq/x SINE Alu -182 130 1 670 118 20 20 chr1 56555664 56555816 -186108537 + Charlie1 DNA MER1_type 2520 2671 -90 1895 125 30 0 chr1 56555849 56556113 -186108240 - AluJb SINE Alu -40 272 1 330 307 150 13 chr1 56556250 56556403 -186107950 + MER5A DNA MER1_type 9 182 -7 716 157 129 7 chr1 56556414 56556554 -186107799 + FRAM SINE Alu 10 166 -10 2125 141 0 0 chr1 56556555 56556853 -186107500 + AluSx SINE Alu 1 298 -14 1932 97 94 0 chr1 56556855 56557122 -186107231 + AluSx SINE Alu 2 293 -19 35 63 0 0 chr1 56557473 56557536 -186106817 + AT_rich Low_complexity Low_complexity 1 63 0 324 252 150 20 chr1 56557675 56557822 -186106531 + L2 LINE L2 3100 3265 -48 954 165 51 0 chr1 56557825 56557983 -186106370 + FRAM SINE Alu 1 165 -11 1659 152 0 69 chr1 56557983 56558286 -186106067 + AluJo SINE Alu 1 282 -30 938 143 0 0 chr1 56558820 56558953 -186105400 - AluJb SINE Alu -177 135 3 1194 303 14 62 chr1 56559146 56559664 -186104689 + MLT1H1 LTR MaLR 63 555 0 461 188 67 87 chr1 56559664 56559699 -186104654 + MLT1H1-int LTR MaLR 1 35 -1336 4996 81 6 54 chr1 56559699 56560256 -186104097 - LTR8 LTR ERV1 0 691 175 2183 106 0 3 chr1 56560256 56560563 -186103790 + AluSx SINE Alu 1 306 0 4996 81 6 54 chr1 56560563 56560730 -186103623 - LTR8 LTR ERV1 -516 175 1 461 188 67 87 chr1 56560730 56560843 -186103510 + MLT1H1-int LTR MaLR 35 146 -1225 253 332 21 48 chr1 56560825 56561012 -186103341 + MLT1H1-int LTR MaLR 332 513 -858 * 1933 146 3 16 chr1 56561054 56561363 -186102990 + AluSx SINE Alu 1 305 -7 1430 156 6 124 chr1 56562014 56562197 -186102156 - AluJb SINE Alu -6 306 103 2335 103 0 0 chr1 56562197 56562499 -186101854 - AluY SINE Alu -9 302 1 1430 156 6 124 chr1 56562499 56562624 -186101729 - AluJb SINE Alu -209 103 41 2332 102 0 3 chr1 56562624 56562927 -186101426 + AluSx SINE Alu 1 302 -10 1430 156 6 124 chr1 56562927 56562964 -186101389 - AluJb SINE Alu -271 41 1 411 242 45 123 chr1 56562969 56563279 -186101074 + MLT1H1-int LTR MaLR 1086 1371 0 1583 253 100 29 chr1 56563279 56563797 -186100556 + MLT1H1 LTR MaLR 1 555 0 217 307 59 10 chr1 56563802 56563903 -186100450 + MIR3 SINE MIR 87 192 -16 1838 158 34 0 chr1 56564007 56564298 -186100055 + AluJb SINE Alu 1 301 -11 67 0 0 0 chr1 56564300 56564367 -186099986 + AT_rich Low_complexity Low_complexity 1 67 0 1738 65 0 14 chr1 56564367 56564581 -186099772 + AluY SINE Alu 97 307 -4 2100 110 10 10 chr1 56564584 56564883 -186099470 + AluSx SINE Alu 1 299 -13 1575 207 24 0 chr1 56564886 56565181 -186099172 + AluJo SINE Alu 1 302 -10 771 240 82 4 chr1 56565412 56565645 -186098708 - MIR SINE MIR 0 262 12 1262 114 6 0 chr1 56565719 56565894 -186098459 - AluSg/x SINE Alu -13 297 122 2077 130 3 16 chr1 56565934 56566249 -186098104 + AluSx SINE Alu 1 311 -1 303 28 0 0 chr1 56566365 56566401 -186097952 + (TG)n Simple_repeat Simple_repeat 2 37 0 317 310 60 60 chr1 56566402 56566670 -186097683 - L2 LINE L2 -481 2833 2566 1084 156 204 31 chr1 56566885 56567376 -186096977 - LTR29 LTR ERV1 -5 617 1 730 231 193 52 chr1 56567457 56567787 -186096566 - LTR29-int LTR ERV1 -211 4725 4394 240 222 61 91 chr1 56567788 56567887 -186096466 - LTR37A LTR ERV1 -327 99 4 1164 89 6 0 chr1 56567887 56568045 -186096308 - LTR49-int LTR ERV1 -771 5560 5402 1770 124 66 0 chr1 56568045 56568319 -186096034 - AluSx SINE Alu -20 292 1 691 174 25 0 chr1 56568319 56568440 -186095913 - LTR49-int LTR ERV1 -1090 5241 5118 28 0 0 0 chr1 56568440 56568468 -186095885 + AT_rich Low_complexity Low_complexity 1 28 0 1976 132 4 0 chr1 56568476 56568787 -186095566 - AluSx SINE Alu 0 314 3 1823 170 3 3 chr1 56568792 56569081 -186095272 - AluJo SINE Alu -19 293 5 606 167 67 17 chr1 56569090 56569210 -186095143 - FLAM_C SINE Alu -16 127 2 1017 117 25 0 chr1 56569211 56569374 -186094979 - LTR49-int LTR ERV1 -1199 5132 4966 2488 88 0 3 chr1 56569374 56569681 -186094672 + AluSx SINE Alu 1 306 -6 2232 116 55 71 chr1 56569681 56569824 -186094529 - LTR49-int LTR ERV1 -1305 3575 3431 1966 131 0 27 chr1 56569824 56570122 -186094231 - AluSg SINE Alu -20 290 1 2328 114 0 0 chr1 56570125 56570431 -186093922 - AluSx SINE Alu -6 306 1 2232 116 55 71 chr1 56570431 56570686 -186093667 - LTR49-int LTR ERV1 -1451 3429 3514 2007 113 4 7 chr1 56570686 56570961 -186093392 - AluSx SINE Alu -9 303 30 2232 116 55 71 chr1 56570961 56571007 -186093346 - LTR49-int LTR ERV1 -1365 3515 3470 4827 140 56 79 chr1 56571167 56572114 -186092239 + MER21A LTR ERV1 1 925 -6 2351 104 0 7 chr1 56572664 56572973 -186091380 + AluSx SINE Alu 2 308 -4 1919 236 102 96 chr1 56572985 56573425 -186090928 - HAL1 LINE L1 -10 2497 2061 2075 123 17 0 chr1 56573425 56573717 -186090636 - AluSx SINE Alu -15 297 1 1919 236 102 96 chr1 56573717 56574034 -186090319 - HAL1 LINE L1 -446 2061 1748 1883 163 0 7 chr1 56574034 56574340 -186090013 - AluJo SINE Alu -8 304 1 1919 236 102 96 chr1 56574340 56574659 -186089694 - HAL1 LINE L1 -759 1748 1413 2095 135 0 19 chr1 56574676 56574994 -186089359 - AluSx SINE Alu 0 312 1 739 173 16 0 chr1 56574996 56575123 -186089230 - AluJo/FLAM SINE Alu -172 130 2 1841 136 22 56 chr1 56575162 56575485 -186088868 + AluSx SINE Alu 1 312 0 2490 87 0 3 chr1 56575730 56576040 -186088313 - AluSx SINE Alu -3 309 1 1705 176 114 11 chr1 56576043 56576402 -186087951 + MSTD LTR MaLR 1 396 0 1988 141 0 7 chr1 56576456 56576747 -186087606 - AluSq SINE Alu -24 289 1 456 0 18 0 chr1 56576779 56576834 -186087519 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2288 79 4 0 chr1 56576834 56577113 -186087240 - AluSp SINE Alu -1 338 5 180 97 0 0 chr1 56577146 56577177 -186087176 + (TATG)n Simple_repeat Simple_repeat 4 34 0 2175 95 0 0 chr1 56577183 56577456 -186086897 - AluSg SINE Alu -37 273 1 2352 79 3 3 chr1 56577495 56577785 -186086568 - AluY SINE Alu -21 290 1 24 32 0 0 chr1 56577852 56577883 -186086470 + AT_rich Low_complexity Low_complexity 1 31 0 849 156 0 15 chr1 56577885 56578020 -186086333 + FLAM_C SINE Alu 1 133 -10 1655 177 0 0 chr1 56578188 56578454 -186085899 - AluJo SINE Alu -5 307 42 585 299 108 0 chr1 56579077 56579291 -186085062 - MIR SINE MIR -12 250 14 269 292 73 10 chr1 56579413 56579509 -186084844 - L2 LINE L2 -9 3263 3162 195 195 218 23 chr1 56579815 56579902 -186084451 - L2 LINE L2 0 3272 3169 1117 268 139 13 chr1 56579924 56580345 -186084008 - L2 LINE L2 -3 3310 2943 2254 123 0 0 chr1 56580345 56580646 -186083707 + AluSx SINE Alu 1 301 -11 1117 268 139 13 chr1 56580646 56580900 -186083453 - L2 LINE L2 -370 2943 2534 2328 111 0 0 chr1 56580918 56581225 -186083128 - AluSg SINE Alu -3 307 1 1091 131 0 52 chr1 56581225 56581416 -186082937 + Tigger1 DNA MER2_type 4 184 -2234 953 158 6 13 chr1 56581419 56581577 -186082776 + FRAM SINE Alu 1 154 -22 720 171 0 0 chr1 56581586 56581697 -186082656 + FLAM_C SINE Alu 1 111 -32 2757 14 0 0 chr1 56581704 56582028 -186082325 - AluYa5 SINE Alu 0 324 1 2776 103 25 40 chr1 56582087 56582379 -186081974 + Tigger1 DNA MER2_type 179 474 -1944 2191 113 0 25 chr1 56582379 56582411 -186081942 - AluSx SINE Alu -1 311 280 240 35 0 0 chr1 56582411 56582440 -186081913 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2191 113 0 25 chr1 56582440 56582726 -186081627 - AluSx SINE Alu -32 280 1 1209 183 138 15 chr1 56582729 56582997 -186081356 - AluJo SINE Alu -1 301 1 2776 103 25 40 chr1 56582997 56583145 -186081208 + Tigger1 DNA MER2_type 476 616 -1802 2402 90 0 3 chr1 56583145 56583444 -186080909 + AluSq SINE Alu 1 298 -15 518 174 23 0 chr1 56583458 56583544 -186080809 + FLAM_A SINE Alu 12 99 -43 279 0 0 0 chr1 56583571 56583602 -186080751 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4000 105 32 55 chr1 56583603 56583944 -186080409 + Tigger1 DNA MER2_type 613 933 -1485 231 36 0 0 chr1 56583944 56583972 -186080381 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4000 105 32 55 chr1 56583972 56584285 -186080068 + Tigger1 DNA MER2_type 933 1252 -1166 2189 102 58 0 chr1 56584303 56584596 -186079757 - AluSx SINE Alu -2 310 1 986 195 18 0 chr1 56584604 56584773 -186079580 - AluJ SINE Alu -24 288 117 2260 100 10 23 chr1 56585200 56585509 -186078844 - AluSx SINE Alu -7 305 1 727 182 8 8 chr1 56585520 56585652 -186078701 - AluJ SINE Alu -179 133 2 366 157 29 0 chr1 56585655 56585725 -186078628 + Tigger1 DNA MER2_type 1252 1323 -1095 205 138 0 0 chr1 56585726 56585755 -186078598 + (GAA)n Simple_repeat Simple_repeat 2 30 0 5335 98 14 34 chr1 56585757 56586294 -186078059 + Tigger1 DNA MER2_type 1294 1841 -577 2234 132 0 0 chr1 56586294 56586604 -186077749 - AluSx SINE Alu -2 310 1 1351 193 51 40 chr1 56586606 56586902 -186077451 - AluJb SINE Alu -13 299 1 5335 98 14 34 chr1 56586902 56587178 -186077175 + Tigger1 DNA MER2_type 1842 2093 -325 1332 92 0 0 chr1 56587179 56587352 -186077001 + AluSp SINE Alu 141 313 0 1945 89 33 94 chr1 56587352 56587506 -186076847 + Tigger1 DNA MER2_type 2079 2241 -177 1553 169 77 0 chr1 56587506 56587618 -186076735 + AluJb SINE Alu 1 103 -202 2337 111 0 13 chr1 56587618 56587933 -186076420 + AluSx SINE Alu 1 311 -1 1553 169 77 0 chr1 56587933 56588105 -186076248 + AluJb SINE Alu 103 305 0 1945 89 33 94 chr1 56588105 56588132 -186076221 + Tigger1 DNA MER2_type 2241 2268 -150 2245 113 3 0 chr1 56588132 56588433 -186075920 - AluSq SINE Alu -11 302 1 1945 89 33 94 chr1 56588433 56588610 -186075743 + Tigger1 DNA MER2_type 2268 2417 -1 3143 217 57 164 chr1 56588617 56589077 -186075276 - L2 LINE L2 -778 2536 2028 2624 128 19 7 chr1 56589077 56589507 -186074846 + L1MA4 LINE L1 5866 6300 0 3143 217 57 164 chr1 56589507 56589922 -186074431 - L2 LINE L2 -1286 2028 1570 848 219 18 73 chr1 56589922 56590141 -186074212 - MER20 DNA MER1_type 0 219 13 271 0 25 25 chr1 56590146 56590186 -186074167 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 3143 217 57 164 chr1 56590186 56591067 -186073286 - L2 LINE L2 -1748 1566 769 230 232 211 11 chr1 56591336 56591431 -186072922 + MLT1L LTR MaLR 350 463 -152 1529 182 43 13 chr1 56591431 56591733 -186072620 - AluJo SINE Alu 0 312 2 401 279 27 0 chr1 56591903 56592014 -186072339 - L2 LINE L2 0 3313 3200 246 207 86 60 chr1 56593026 56593142 -186071211 + L2 LINE L2 2672 2790 -524 243 226 151 21 chr1 56593130 56593223 -186071130 + MIR SINE MIR 158 262 0 * 600 172 112 0 chr1 56593518 56593634 -186070719 - FLAM_A SINE Alu -1 132 4 838 147 23 0 chr1 56593693 56593822 -186070531 - FLAM_C SINE Alu 0 133 2 287 80 20 40 chr1 56593823 56593873 -186070480 - LTR49 LTR ERV1 -88 507 459 495 195 12 0 chr1 56593874 56593956 -186070397 - MER81 DNA DNA -31 83 1 256 368 9 0 chr1 56594015 56594121 -186070232 + MIR3 SINE MIR 89 195 -13 30 0 0 0 chr1 56594121 56594151 -186070202 + AT_rich Low_complexity Low_complexity 1 30 0 911 178 0 7 chr1 56594164 56594310 -186070043 - FRAM SINE Alu -39 137 1 1654 118 0 13 chr1 56594321 56594550 -186069803 - AluSg/x SINE Alu -17 293 68 1677 181 17 0 chr1 56594580 56594867 -186069486 - AluJo SINE Alu -20 292 1 1256 140 0 0 chr1 56595241 56595419 -186068934 - AluSg/x SINE Alu -12 298 121 234 0 0 0 chr1 56595424 56595450 -186068903 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2098 119 0 7 chr1 56595450 56595736 -186068617 - AluSx SINE Alu -28 284 1 2053 136 17 0 chr1 56595739 56596033 -186068320 - AluSx SINE Alu -13 299 1 22 0 0 0 chr1 56596042 56596064 -186068289 + AT_rich Low_complexity Low_complexity 1 22 0 919 143 0 0 chr1 56596114 56596247 -186068106 + FLAM_C SINE Alu 1 133 0 2346 91 3 0 chr1 56596324 56596621 -186067732 - AluY SINE Alu -13 298 1 476 186 23 0 chr1 56596633 56596719 -186067634 - MER5A DNA MER1_type -93 96 9 287 235 82 0 chr1 56597088 56597173 -186067180 + MER112 DNA MER1_type 169 260 0 2302 112 0 3 chr1 56597246 56597558 -186066795 - AluSq SINE Alu -2 311 1 766 162 0 70 chr1 56597641 56597783 -186066570 - AluSq/x SINE Alu -179 133 2 436 330 24 14 chr1 56597793 56598005 -186066348 - MIR SINE MIR -11 251 38 1828 170 14 0 chr1 56598224 56598518 -186065835 + AluJo SINE Alu 3 300 -12 807 131 0 46 chr1 56599610 56599740 -186064613 - FLAM_A SINE Alu -9 124 1 2221 140 0 0 chr1 56599747 56600055 -186064298 - AluSx SINE Alu -4 308 1 3504 123 13 52 chr1 56600057 56600134 -186064219 - L1MA4A LINE L1 -475 5828 5750 2212 90 7 23 chr1 56600134 56600435 -186063918 - AluSx SINE Alu -16 296 1 3504 123 13 52 chr1 56600435 56601137 -186063216 - L1MA4A LINE L1 -553 5750 5062 380 94 0 47 chr1 56601302 56601366 -186062987 - AluSp/q SINE Alu -4 299 239 4074 104 76 72 chr1 56602066 56602513 -186061840 + Tigger3b DNA MER2_type 64 517 -2511 2837 128 182 47 chr1 56602513 56602848 -186061505 + LTR8A LTR ERV1 1 289 -438 1945 148 7 3 chr1 56602848 56603145 -186061208 - AluJo SINE Alu -14 298 1 2837 128 182 47 chr1 56603145 56603447 -186060906 + LTR8A LTR ERV1 289 724 -3 4074 104 76 72 chr1 56603447 56603814 -186060539 + Tigger3b DNA MER2_type 517 881 -350 305 259 27 82 chr1 56605045 56605192 -186059161 + MIR SINE MIR 58 196 -66 244 279 108 0 chr1 56605205 56605316 -186059037 + L2 LINE L2 3191 3313 0 2244 92 0 3 chr1 56605576 56605880 -186058473 + AluSq SINE Alu 1 303 0 867 282 58 15 chr1 56605880 56606199 -186058154 - L1MDa LINE L1 -5485 1055 582 183 259 24 82 chr1 56606728 56606813 -186057540 - L2 LINE L2 -3 3269 3190 1518 160 64 29 chr1 56606830 56607111 -186057242 - AluJo SINE Alu -15 297 7 1035 119 6 19 chr1 56607293 56607453 -186056900 - MLT1A1 LTR MaLR -203 162 5 326 314 47 37 chr1 56608581 56608772 -186055581 - L2 LINE L2 -1046 2268 2076 439 284 39 8 chr1 56608868 56608995 -186055358 - L2 LINE L2 -8 3264 3134 445 289 139 10 chr1 56609078 56609272 -186055081 - MIR SINE MIR -31 231 13 995 143 0 109 chr1 56609437 56609647 -186054706 - MER20 DNA MER1_type 0 219 33 2462 80 3 0 chr1 56609754 56610053 -186054300 + AluSx SINE Alu 1 300 -12 899 211 0 0 chr1 56610106 56610272 -186054081 + FRAM SINE Alu 1 163 -13 191 268 56 42 chr1 56610436 56610507 -186053846 + L2 LINE L2 3154 3225 -47 29 28 0 0 chr1 56610526 56610562 -186053791 + AT_rich Low_complexity Low_complexity 1 36 0 1421 175 2 103 chr1 56610806 56611212 -186053141 - MLT1A1 LTR MaLR 0 365 1 186 254 127 99 chr1 56611358 56611412 -186052941 + MIR SINE MIR 50 101 -161 1238 164 44 51 chr1 56611412 56611686 -186052667 + ORSL DNA AcHobo 4 275 0 186 254 127 99 chr1 56611686 56611773 -186052580 + MIR SINE MIR 101 195 -67 198 261 72 0 chr1 56612586 56612655 -186051698 + L2 LINE L2 2924 2997 -275 449 351 24 0 chr1 56612816 56613021 -186051332 - MIR SINE MIR -16 246 37 2365 62 41 0 chr1 56613058 56613350 -186051003 - AluY SINE Alu -7 304 1 1698 148 9 83 chr1 56613451 56613788 -186050565 - AluJo SINE Alu 0 312 1 250 269 60 0 chr1 56613827 56613894 -186050459 + L2 LINE L2 3241 3311 -2 2005 151 7 0 chr1 56613917 56614216 -186050137 + AluJb SINE Alu 1 301 -11 308 306 32 8 chr1 56614511 56614635 -186049718 - MIR SINE MIR -73 189 63 1273 250 81 39 chr1 56614821 56615253 -186049100 - LTR16C LTR ERVL -41 450 1 2351 98 0 0 chr1 56615316 56615612 -186048741 + AluSx SINE Alu 1 296 -16 914 185 72 68 chr1 56615649 56615697 -186048656 + MER58A DNA MER1_type 2 48 -2372 2226 101 7 0 chr1 56615697 56615994 -186048359 - AluSx SINE Alu -13 299 1 914 185 72 68 chr1 56615994 56616167 -186048186 + MER58A DNA MER1_type 48 224 0 228 383 53 11 chr1 56616168 56616262 -186048091 - L2 LINE L2 -53 3219 3122 812 139 8 0 chr1 56616352 56616481 -186047872 + FLAM_C SINE Alu 2 131 -2 239 306 37 46 chr1 56616486 56616594 -186047759 - L2 LINE L2 -221 3051 2945 1986 113 56 0 chr1 56616743 56617027 -186047326 + AluSg SINE Alu 1 300 -10 292 129 0 32 chr1 56617033 56617095 -186047258 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 224 297 11 44 chr1 56617162 56617253 -186047100 - L2 LINE L2 -688 2626 2539 192 276 69 0 chr1 56617334 56617392 -186046961 + L2 LINE L2 3153 3214 -58 22 0 0 0 chr1 56617718 56617740 -186046613 + AT_rich Low_complexity Low_complexity 1 22 0 292 208 68 95 chr1 56617755 56617810 -186046543 - L1ME4a LINE L1 -5 6116 6061 2637 39 0 7 chr1 56617810 56618116 -186046237 + AluY SINE Alu 2 305 -6 292 208 68 95 chr1 56618116 56618196 -186046157 - L1ME4a LINE L1 -60 6061 5987 2243 127 7 0 chr1 56618196 56618504 -186045849 - AluSx SINE Alu -2 310 1 292 208 68 95 chr1 56618504 56618588 -186045765 - L1ME4a LINE L1 -134 5987 5902 4435 132 19 41 chr1 56618743 56619347 -186045006 - MER50 LTR ERV1 -16 718 131 2319 82 0 17 chr1 56619347 56619638 -186044715 - AluSg SINE Alu -24 286 1 4435 132 19 41 chr1 56619638 56619767 -186044586 - MER50 LTR ERV1 -603 131 1 222 317 80 71 chr1 56620167 56620378 -186043975 + L2 LINE L2 1994 2202 -1112 1837 162 0 23 chr1 56620378 56620686 -186043667 - AluJo SINE Alu -11 301 1 222 317 80 71 chr1 56620686 56620784 -186043569 + L2 LINE L2 2202 2309 -1005 2380 77 7 3 chr1 56620784 56621082 -186043271 - AluSq SINE Alu -14 299 1 222 317 80 71 chr1 56621082 56621096 -186043257 + L2 LINE L2 2309 2321 -993 1557 117 9 0 chr1 56621280 56621530 -186042823 - AluSg/x SINE Alu 0 317 66 185 264 35 35 chr1 56621530 56621617 -186042736 - L2 LINE L2 0 3272 3186 2063 101 7 24 chr1 56622725 56623050 -186041303 + AluSx SINE Alu 1 312 0 251 158 0 0 chr1 56623808 56623846 -186040507 - U2 snRNA snRNA -150 38 1 508 282 21 0 chr1 56623916 56624058 -186040295 + MIR SINE MIR 47 191 -71 244 304 88 20 chr1 56624125 56624227 -186040126 - L2 LINE L2 -4 3268 3160 462 277 65 0 chr1 56624481 56624636 -186039717 + MIR SINE MIR 90 254 -8 1613 133 0 133 chr1 56624771 56625118 -186039235 - AluJb SINE Alu -1 301 1 1599 170 0 67 chr1 56625328 56625640 -186038713 - AluJo SINE Alu -21 291 1 225 0 0 0 chr1 56625676 56625701 -186038652 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1016 254 4 8 chr1 56625725 56625981 -186038372 - MIR SINE MIR 0 262 8 2070 116 29 0 chr1 56626014 56626317 -186038036 + AluSq SINE Alu 2 312 0 200 338 68 0 chr1 56626584 56626658 -186037695 + MIR SINE MIR 177 255 -7 187 293 53 0 chr1 56626668 56626743 -186037610 - MIR SINE MIR -94 168 90 2523 116 53 22 chr1 56627047 56627462 -186036891 + MSTA LTR MaLR 1 428 0 2010 137 0 3 chr1 56627866 56628150 -186036203 + AluSx SINE Alu 1 306 -6 187 43 0 0 chr1 56628150 56628173 -186036180 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1477 169 113 14 chr1 56628738 56629057 -186035296 + AluJo SINE Alu 1 347 0 288 240 31 77 chr1 56630173 56630362 -186033991 + L2 LINE L2 2800 2979 -293 355 319 52 68 chr1 56630431 56630679 -186033674 - MIR SINE MIR -12 250 7 340 232 115 18 chr1 56630959 56631072 -186033281 + MIR SINE MIR 34 154 -61 182 288 88 77 chr1 56631670 56631840 -186032513 + L2 LINE L2 3077 3248 -24 350 358 97 10 chr1 56632065 56632272 -186032081 + L2 LINE L2 2988 3212 -60 305 300 55 0 chr1 56632542 56632652 -186031701 + MIR SINE MIR 95 210 -52 832 206 98 33 chr1 56632871 56633195 -186031158 - LTR33 LTR ERVL 0 521 117 483 286 109 6 chr1 56633199 56633374 -186030979 - MIR SINE MIR -43 219 27 186 43 0 0 chr1 56633481 56633504 -186030849 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 960 128 0 0 chr1 56633540 56633673 -186030680 - AluSg/x SINE Alu -46 264 132 1811 133 59 25 chr1 56633673 56633959 -186030394 - AluSx SINE Alu -16 296 1 523 289 52 20 chr1 56634791 56634992 -186029361 - MIR SINE MIR -43 219 18 319 287 116 24 chr1 56635172 56635336 -186029017 - MIR SINE MIR -8 254 76 427 361 21 11 chr1 56635388 56635579 -186028774 - MIR3 SINE MIR -12 196 4 287 198 58 12 chr1 56635605 56635691 -186028662 + MIR SINE MIR 104 193 -69 1786 72 9 0 chr1 56635769 56635991 -186028362 - AluSg/x SINE Alu -19 291 68 206 344 0 0 chr1 56636132 56636196 -186028157 + L2 LINE L2 3242 3305 -8 186 250 23 0 chr1 56636235 56636279 -186028074 - MIR SINE MIR -20 242 198 1801 189 0 3 chr1 56636323 56636624 -186027729 + AluJo SINE Alu 1 300 -12 194 221 149 75 chr1 56637273 56637421 -186026932 - MIR SINE MIR -79 183 28 329 305 138 24 chr1 56637527 56637694 -186026659 + MIR SINE MIR 2 187 -75 247 238 95 36 chr1 56637737 56637821 -186026532 - U6 snRNA snRNA -18 89 1 2192 124 0 7 chr1 56637867 56638166 -186026187 + AluSx SINE Alu 1 297 -15 2293 121 3 0 chr1 56638166 56638473 -186025880 + AluSp SINE Alu 1 308 -5 2305 103 0 3 chr1 56638473 56638774 -186025579 + AluSc SINE Alu 1 300 -9 2287 108 0 3 chr1 56639277 56639583 -186024770 + AluSg SINE Alu 1 305 -5 1663 220 16 36 chr1 56639946 56640204 -186024149 + L1M4 LINE L1 4731 4978 -1168 1651 181 17 3 chr1 56640204 56640502 -186023851 + AluJo SINE Alu 1 302 -10 1663 220 16 36 chr1 56640502 56640684 -186023669 + L1M4 LINE L1 4978 5162 -984 1716 178 6 32 chr1 56640685 56640999 -186023354 + AluJb SINE Alu 1 306 -6 22 35 0 0 chr1 56641056 56641085 -186023268 + AT_rich Low_complexity Low_complexity 1 29 0 1647 184 16 20 chr1 56641681 56641986 -186022367 + AluSx SINE Alu 1 304 -8 25 31 0 0 chr1 56642176 56642208 -186022145 + AT_rich Low_complexity Low_complexity 1 32 0 1861 121 32 21 chr1 56642881 56643199 -186021154 - AluSx SINE Alu 0 321 1 2098 117 10 0 chr1 56643287 56643578 -186020775 + AluSx SINE Alu 1 294 -18 441 288 165 49 chr1 56644213 56644578 -186019775 + L2 LINE L2 1728 2049 -1265 2406 158 125 42 chr1 56644578 56645098 -186019255 + MLT1F1 LTR MaLR 1 563 -4 441 288 165 49 chr1 56645098 56645429 -186018924 + L2 LINE L2 2049 2505 -809 301 214 57 0 chr1 56645494 56645564 -186018789 + L1MC4a LINE L1 7274 7347 -461 807 219 121 40 chr1 56645569 56645966 -186018387 + L1MC5 LINE L1 7274 7702 -259 405 193 0 0 chr1 56645978 56646066 -186018287 - AluY SINE Alu -10 301 214 382 194 213 9 chr1 56646739 56646847 -186017506 - MER5A DNA MER1_type -1 188 59 339 65 0 0 chr1 56646879 56646925 -186017428 + (TG)n Simple_repeat Simple_repeat 2 47 0 2624 191 33 90 chr1 56647507 56648052 -186016301 - LTR8 LTR ERV1 0 691 197 2436 60 0 0 chr1 56648052 56648333 -186016020 - AluY SINE Alu -14 297 17 2624 191 33 90 chr1 56648333 56648520 -186015833 - LTR8 LTR ERV1 -494 197 1 211 243 25 15 chr1 56648587 56648684 -186015669 - MIR SINE MIR -65 143 63 2229 94 5 76 chr1 56649231 56649489 -186014864 - L1MA3 LINE L1 0 6305 6030 369 109 0 0 chr1 56649489 56649544 -186014809 + (TA)n Simple_repeat Simple_repeat 2 56 0 1859 101 62 4 chr1 56649545 56649803 -186014550 - AluSg SINE Alu -13 297 25 2229 94 5 76 chr1 56649803 56649925 -186014428 - L1MA3 LINE L1 -274 6031 5950 454 270 85 21 chr1 56650113 56650302 -186014051 - MIR SINE MIR -1 261 61 24 32 0 0 chr1 56650409 56650440 -186013913 + AT_rich Low_complexity Low_complexity 1 31 0 2258 112 3 13 chr1 56650476 56650788 -186013565 + AluSx SINE Alu 1 309 -3 2143 79 8 0 chr1 56650870 56651136 -186013217 - AluSp SINE Alu -45 268 1 266 301 98 15 chr1 56651756 56651889 -186012464 - MIR SINE MIR -39 223 80 278 243 54 0 chr1 56652057 56652131 -186012222 - L1M4 LINE L1 -3568 2578 2501 204 227 0 0 chr1 56652149 56652193 -186012160 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1072 145 21 98 chr1 56652194 56652367 -186011986 - AluJo SINE Alu -30 282 130 2248 78 10 3 chr1 56652367 56652660 -186011693 + AluSp SINE Alu 1 295 -18 1072 145 21 98 chr1 56652660 56652720 -186011633 - AluJo SINE Alu -182 130 67 1631 166 0 40 chr1 56652793 56653095 -186011258 - AluJb SINE Alu 0 312 23 2043 135 0 0 chr1 56653423 56653712 -186010641 + AluSg SINE Alu 1 289 -21 630 275 84 0 chr1 56653824 56654002 -186010351 + MIR SINE MIR 10 202 -60 452 243 66 15 chr1 56654022 56654158 -186010195 - L2 LINE L2 0 3313 3171 227 315 63 42 chr1 56654169 56654312 -186010041 + MIR SINE MIR 112 257 -5 297 0 0 0 chr1 56654345 56654378 -186009975 + (CA)n Simple_repeat Simple_repeat 2 34 0 1776 175 0 21 chr1 56654453 56654784 -186009569 + AluJb SINE Alu 1 325 0 432 303 108 10 chr1 56655216 56655411 -186008942 + MIR SINE MIR 49 262 0 2161 112 0 3 chr1 56655532 56655845 -186008508 + AluSx SINE Alu 1 312 0 614 241 56 6 chr1 56656161 56656323 -186008030 - MIR SINE MIR -70 192 23 1966 142 0 3 chr1 56656494 56656796 -186007557 - AluSx SINE Alu 0 301 1 255 176 0 0 chr1 56656908 56656959 -186007394 + L2 LINE L2 3262 3312 -1 1695 171 28 3 chr1 56657657 56657944 -186006409 + AluJb SINE Alu 2 295 -17 920 157 0 0 chr1 56657947 56658087 -186006266 + FLAM_C SINE Alu 1 140 -3 25 65 0 0 chr1 56658243 56658289 -186006064 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr1 56658337 56658377 -186005976 + AT_rich Low_complexity Low_complexity 1 40 0 33 0 0 0 chr1 56658459 56658492 -186005861 + AT_rich Low_complexity Low_complexity 1 33 0 1909 122 7 28 chr1 56658492 56658779 -186005574 - AluJb SINE Alu -27 285 5 656 309 96 29 chr1 56658966 56659445 -186004908 - L1ME2 LINE L1 -281 5883 5373 2535 67 0 0 chr1 56659630 56659930 -186004423 - AluY SINE Alu -11 300 1 2038 131 3 3 chr1 56660116 56660406 -186003947 + AluJb SINE Alu 1 290 -22 1369 191 28 12 chr1 56660685 56660936 -186003417 - AluJo SINE Alu -57 255 1 491 135 0 83 chr1 56660969 56661065 -186003288 - AluJb SINE Alu -139 173 86 396 309 143 21 chr1 56661066 56661289 -186003064 - L1M4 LINE L1 -3658 2488 2209 2408 101 0 0 chr1 56661289 56661595 -186002758 + AluSx SINE Alu 1 306 -6 396 309 143 21 chr1 56661595 56661707 -186002646 - L1M4 LINE L1 -3937 2209 2112 619 194 0 104 chr1 56662067 56662211 -186002142 - FLAM_A SINE Alu -6 136 8 359 265 31 0 chr1 56662243 56662341 -186002012 + MIR SINE MIR 106 206 -56 300 260 38 105 chr1 56662622 56662738 -186001615 + MIR SINE MIR 1 106 -156 2259 101 0 0 chr1 56662738 56663035 -186001318 + AluY SINE Alu 1 297 -14 300 260 38 105 chr1 56663035 56663136 -186001217 + MIR SINE MIR 106 212 -50 251 280 114 30 chr1 56663509 56663589 -186000764 - MIR SINE MIR -76 186 96 679 272 38 10 chr1 56663589 56663836 -186000517 + MIR SINE MIR 2 249 -13 291 308 28 0 chr1 56664057 56664164 -186000189 + MIR SINE MIR 34 143 -65 1916 163 0 3 chr1 56664245 56664545 -185999808 + AluJb SINE Alu 2 300 -12 309 316 43 8 chr1 56665139 56665256 -185999097 - L2 LINE L2 -11 3302 3182 189 107 0 0 chr1 56665259 56665287 -185999066 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 1227 120 0 0 chr1 56665293 56665451 -185998902 - AluSg/x SINE Alu -21 291 134 2356 102 3 0 chr1 56665451 56665755 -185998598 - AluSx SINE Alu -7 305 1 2311 89 3 0 chr1 56665766 56666058 -185998295 - AluSc SINE Alu -16 293 1 35 0 0 0 chr1 56666198 56666233 -185998120 + AT_rich Low_complexity Low_complexity 1 35 0 187 379 35 0 chr1 56666241 56666328 -185998025 - L2 LINE L2 -261 3052 2963 356 310 38 71 chr1 56666392 56666625 -185997728 - L2 LINE L2 -376 2938 2714 711 243 86 67 chr1 56666625 56666880 -185997473 + MIR SINE MIR 3 262 0 1588 276 109 21 chr1 56666887 56667702 -185996651 - L2 LINE L2 -609 2705 1819 479 198 40 20 chr1 56667703 56667804 -185996549 + U6 snRNA snRNA 1 103 -4 5912 213 77 40 chr1 56667884 56668113 -185996240 + L1MC4 LINE L1 6209 6428 -1614 2165 112 0 3 chr1 56668113 56668424 -185995929 - AluSx SINE Alu 0 310 1 5912 213 77 40 chr1 56668424 56668592 -185995761 + L1MC4 LINE L1 6428 6588 -1454 1580 154 71 11 chr1 56668592 56668858 -185995495 + AluJo SINE Alu 1 282 -30 5912 213 77 40 chr1 56668858 56669814 -185994539 + L1MC4 LINE L1 6588 7648 -394 1525 186 0 43 chr1 56669814 56670136 -185994217 + AluJo SINE Alu 1 308 -4 5912 213 77 40 chr1 56670136 56670547 -185993806 + L1MC4 LINE L1 7648 8042 0 1774 146 3 52 chr1 56670570 56670879 -185993474 + AluSx SINE Alu 5 298 -14 281 312 142 0 chr1 56670904 56671045 -185993308 - L2 LINE L2 -1497 1817 1657 280 323 11 0 chr1 56671054 56671147 -185993206 + MIR3 SINE MIR 115 208 0 317 279 62 8 chr1 56671510 56671639 -185992714 - MIR3 SINE MIR -7 201 66 2227 106 3 0 chr1 56672216 56672508 -185991845 - AluSg SINE Alu -17 293 1 333 100 0 0 chr1 56672570 56672620 -185991733 + (A)n Simple_repeat Simple_repeat 1 50 0 2177 125 0 13 chr1 56672922 56673233 -185991120 - AluSx SINE Alu -4 308 2 4348 250 144 15 chr1 56673510 56675126 -185989227 + L2 LINE L2 877 2701 -613 2159 111 3 13 chr1 56675135 56675442 -185988911 - AluSx SINE Alu -8 304 1 1765 114 95 7 chr1 56675445 56675718 -185988635 - AluSx SINE Alu -15 297 1 671 101 0 0 chr1 56675728 56675817 -185988536 - AluJo SINE Alu -21 291 203 854 124 41 28 chr1 56675817 56675962 -185988391 - AluJo SINE Alu -163 149 3 3871 174 17 81 chr1 56675963 56676233 -185988120 - L1M4 LINE L1 -837 5309 5023 2470 77 3 3 chr1 56676233 56676544 -185987809 - AluY SINE Alu 0 311 1 3871 174 17 81 chr1 56676544 56676911 -185987442 - L1M4 LINE L1 -1123 5023 4634 2204 68 7 25 chr1 56676911 56677191 -185987162 + AluY SINE Alu 21 295 -16 3871 174 17 81 chr1 56677191 56677543 -185986810 - L1M4 LINE L1 -1512 4634 4383 1591 189 7 7 chr1 56677543 56677844 -185986509 - AluSx SINE Alu -11 301 1 3871 174 17 81 chr1 56677844 56677871 -185986482 - L1M4 LINE L1 -1763 4383 4356 1121 138 0 17 chr1 56677872 56678046 -185986307 - AluSg/x SINE Alu -12 300 130 1097 179 54 8 chr1 56678046 56678286 -185986067 - L1M4 LINE L1 -1789 4357 4107 1930 129 0 40 chr1 56678300 56678602 -185985751 - AluSx SINE Alu -22 290 1 1809 171 4 0 chr1 56678825 56679105 -185985248 + AluJo SINE Alu 10 290 -22 462 36 0 0 chr1 56679133 56679189 -185985164 + (CAT)n Simple_repeat Simple_repeat 2 57 0 520 298 133 18 chr1 56679200 56679418 -185984935 - MIR SINE MIR -12 250 8 2344 90 0 13 chr1 56679466 56679776 -185984577 + AluSc SINE Alu 1 306 -3 190 224 41 0 chr1 56679938 56679987 -185984366 - L2 LINE L2 -12 3260 3210 346 254 0 0 chr1 56680261 56680332 -185984021 - L2 LINE L2 -555 2759 2689 1838 187 0 0 chr1 56680333 56680632 -185983721 + AluJb SINE Alu 1 299 -13 599 107 12 0 chr1 56680638 56680722 -185983631 + FRAM SINE Alu 43 127 -49 631 285 78 31 chr1 56680735 56680991 -185983362 - L2 LINE L2 -613 2701 2434 564 284 86 18 chr1 56681143 56681365 -185982988 - MIR SINE MIR -6 256 20 309 340 35 21 chr1 56682016 56682160 -185982193 - MIR SINE MIR -71 191 46 212 284 23 23 chr1 56683007 56683095 -185981258 + MIR SINE MIR 121 208 -54 868 138 0 0 chr1 56683105 56683235 -185981118 + FLAM_C SINE Alu 3 132 -1 27 49 0 0 chr1 56683376 56683417 -185980936 + AT_rich Low_complexity Low_complexity 1 41 0 801 169 0 0 chr1 56683417 56683535 -185980818 - FLAM_C SINE Alu -25 118 1 316 290 80 51 chr1 56683641 56683817 -185980536 - MIR SINE MIR -4 258 78 243 0 0 0 chr1 56683985 56684012 -185980341 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr1 56684293 56684322 -185980031 + AT_rich Low_complexity Low_complexity 1 29 0 2302 105 3 0 chr1 56684453 56684758 -185979595 + AluSx SINE Alu 1 306 -6 513 195 106 0 chr1 56684804 56684917 -185979436 - FLAM_A SINE Alu -7 126 2 284 250 15 15 chr1 56684969 56685037 -185979316 - MIR SINE MIR -57 151 84 315 261 28 26 chr1 56685237 56685375 -185978978 - MIR SINE MIR -47 215 2 * 450 273 70 0 chr1 56685375 56685502 -185978851 + MIR SINE MIR 65 200 -62 361 318 127 38 chr1 56685935 56686171 -185978182 - L2 LINE L2 -17 3255 2999 430 340 47 61 chr1 56686267 56686546 -185977807 - L2 LINE L2 -43 3229 2955 292 268 127 0 chr1 56686692 56686798 -185977555 + MIR SINE MIR 37 142 -66 38 61 0 0 chr1 56687071 56687137 -185977216 + GC_rich Low_complexity Low_complexity 1 66 0 445 292 89 80 chr1 56687170 56687873 -185976480 + L1M2 LINE L1 634 1225 -5624 29 0 0 0 chr1 56689423 56689452 -185974901 + AT_rich Low_complexity Low_complexity 1 29 0 267 241 0 0 chr1 56689764 56689818 -185974535 - L2 LINE L2 -5 3308 3255 240 310 103 26 chr1 56689991 56690107 -185974246 + MIR SINE MIR 21 145 -63 345 243 7 129 chr1 56690107 56690247 -185974106 - L2 LINE L2 -8 3305 3183 266 177 97 16 chr1 56690231 56690293 -185974060 + L3 LINE CR1 1502 1568 -9 * 192 289 0 19 chr1 56690655 56690707 -185973646 - MIR SINE MIR -180 82 32 1246 164 5 27 chr1 56691014 56691234 -185973119 - AluJb SINE Alu -5 307 93 486 112 276 26 chr1 56692029 56692145 -185972208 + L1PA13 LINE L1 6018 6162 -1 264 237 134 21 chr1 56692777 56692874 -185971479 - MIR SINE MIR -92 170 63 594 275 81 7 chr1 56693092 56693376 -185970977 - L1MC4a LINE L1 -1927 5881 5577 1280 145 113 50 chr1 56693385 56693667 -185970686 + AluJo SINE Alu 6 305 -7 288 271 110 43 chr1 56693709 56693964 -185970389 - L1MC4a LINE L1 -590 5531 5260 325 244 85 0 chr1 56694158 56694240 -185970113 + MIR SINE MIR 61 149 -113 1004 202 79 0 chr1 56694773 56694976 -185969377 - MER20 DNA MER1_type 0 219 1 2000 112 9 37 chr1 56694977 56695298 -185969055 - AluSx SINE Alu 0 312 1 2263 92 0 7 chr1 56695324 56695628 -185968725 - AluSx SINE Alu -10 302 1 245 238 70 33 chr1 56696107 56696192 -185968161 - MIR SINE MIR -107 101 16 180 77 0 0 chr1 56696294 56696320 -185968033 + (TG)n Simple_repeat Simple_repeat 2 27 0 532 237 71 85 chr1 56696344 56696568 -185967785 - MIR SINE MIR -1 261 41 275 352 62 67 chr1 56697312 56697505 -185966848 - L2 LINE L2 -9 3263 3072 26 0 0 0 chr1 56697827 56697853 -185966500 + AT_rich Low_complexity Low_complexity 1 26 0 278 272 26 44 chr1 56697891 56698005 -185966348 + MIR SINE MIR 3 114 -148 933 123 35 0 chr1 56698125 56698296 -185966057 + CT-rich Low_complexity Low_complexity 2 178 0 2227 105 3 22 chr1 56698300 56698615 -185965738 - AluSc SINE Alu 0 309 1 211 256 0 0 chr1 56698773 56698816 -185965537 + (TA)n Simple_repeat Simple_repeat 1 43 0 2160 152 0 0 chr1 56698820 56699130 -185965223 - AluSg SINE Alu 0 310 1 2165 131 0 6 chr1 56700324 56700638 -185963715 + AluSx SINE Alu 1 312 0 503 136 45 0 chr1 56700638 56700726 -185963627 + AluSg/x SINE Alu 217 308 -1 4863 180 53 36 chr1 56700816 56701378 -185962975 - L1MB7 LINE L1 0 6184 5633 2113 129 3 0 chr1 56701378 56701672 -185962681 - AluSx SINE Alu -17 295 1 4863 180 53 36 chr1 56701672 56702088 -185962265 - L1MB7 LINE L1 -551 5633 5225 1878 125 24 27 chr1 56702088 56702384 -185961969 - AluJb SINE Alu -17 295 1 4863 180 53 36 chr1 56702384 56702851 -185961502 - L1MB7 LINE L1 -959 5225 4767 1979 131 29 20 chr1 56702851 56703157 -185961196 - AluSq SINE Alu -4 309 1 4863 180 53 36 chr1 56703157 56703485 -185960868 - L1MB7 LINE L1 -1417 4767 4446 2199 116 0 7 chr1 56703485 56703788 -185960565 - AluSx SINE Alu -11 301 1 4863 180 53 36 chr1 56703788 56704085 -185960268 - L1MB7 LINE L1 -1738 4446 4072 24 32 0 0 chr1 56704161 56704192 -185960161 + AT_rich Low_complexity Low_complexity 1 31 0 1594 195 24 7 chr1 56704235 56704527 -185959826 - AluJb SINE Alu -15 297 1 278 269 130 28 chr1 56704569 56704677 -185959676 + MER5A DNA MER1_type 2 120 -69 1759 131 7 4 chr1 56704732 56705006 -185959347 + AluSx SINE Alu 1 275 -37 387 0 0 0 chr1 56705185 56705228 -185959125 + (CA)n Simple_repeat Simple_repeat 1 43 0 1651 216 52 5 chr1 56705268 56705690 -185958663 - MER44D DNA MER2_type -108 497 1 1977 101 4 19 chr1 56705861 56706129 -185958224 + AluSx SINE Alu 1 264 -48 271 317 137 19 chr1 56706229 56706390 -185957963 + L2 LINE L2 2887 3066 -206 1787 182 3 3 chr1 56706442 56706739 -185957614 - AluJo SINE Alu -15 297 1 466 146 25 2 chr1 56707670 56707782 -185956571 - LTR37B LTR ERV1 0 468 312 2163 117 10 0 chr1 56707815 56708122 -185956231 + AluSq SINE Alu 1 310 -3 236 242 30 0 chr1 56708151 56708217 -185956136 - LTR37A LTR ERV1 -241 185 118 255 195 61 24 chr1 56708391 56708473 -185955880 - MER31-int LTR ERV1 -741 4195 4111 812 279 42 45 chr1 56708598 56709025 -185955328 - MER31-int LTR ERV1 -876 4060 3635 21020 56 2 4 chr1 56709043 56711905 -185952448 + L1P LINE L1 1029 3885 -2261 2151 50 0 0 chr1 56711905 56712202 -185952151 + L1PA8 LINE L1 3128 3424 -2722 7005 68 3 0 chr1 56712202 56713962 -185950391 + L1PA8 LINE L1 4430 6171 -1 23 33 0 0 chr1 56714007 56714037 -185950316 + AT_rich Low_complexity Low_complexity 1 30 0 186 267 0 70 chr1 56714194 56714280 -185950073 - L3 LINE CR1 -1169 408 329 231 386 83 23 chr1 56714626 56715012 -185949341 + L2 LINE L2 2844 3252 -20 1306 163 0 5 chr1 56715330 56715520 -185948833 - AluJb SINE Alu -19 293 105 366 183 14 0 chr1 56715672 56715743 -185948610 + AluS SINE Alu 226 297 -3 2053 94 17 23 chr1 56715800 56716099 -185948254 - AluSq SINE Alu -16 297 1 2236 104 7 3 chr1 56716215 56716522 -185947831 - AluSq SINE Alu -5 308 1 962 179 16 22 chr1 56716537 56716700 -185947653 + AluJb SINE Alu 129 292 -20 3594 166 50 20 chr1 56716700 56717437 -185946916 + L1MB4 LINE L1 5422 6180 0 962 179 16 22 chr1 56717437 56717457 -185946896 + AluJb SINE Alu 292 311 -1 2567 194 112 14 chr1 56717457 56717999 -185946354 + L1MB4 LINE L1 5331 5818 -362 1330 174 14 135 chr1 56717999 56718414 -185945939 - MLT1A1 LTR MaLR 0 365 1 2567 194 112 14 chr1 56718414 56718544 -185945809 + L1MB4 LINE L1 5818 5934 -246 2304 136 19 3 chr1 56718544 56718904 -185945449 - MER47A DNA MER2_type 0 366 1 2567 194 112 14 chr1 56718904 56718924 -185945429 + L1MB4 LINE L1 5934 6092 -88 2289 90 0 0 chr1 56719233 56719523 -185944830 - AluSc SINE Alu -14 295 6 187 155 138 35 chr1 56719817 56719875 -185944478 + MIR SINE MIR 84 147 -115 238 226 44 94 chr1 56719967 56720148 -185944205 + HsTC2 DNA Tc2 103 274 -1624 207 288 151 0 chr1 56720216 56720289 -185944064 - L2 LINE L2 -1 3312 3229 648 290 115 9 chr1 56720929 56721146 -185943207 + MIR SINE MIR 8 247 -15 210 37 0 0 chr1 56721860 56721887 -185942466 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 362 284 175 31 chr1 56721922 56722151 -185942202 - MLT1K LTR MaLR -8 580 319 657 304 108 65 chr1 56722244 56722278 -185942075 - L2 LINE L2 -2042 1272 1241 1265 168 307 3 chr1 56722278 56722636 -185941717 + MLT1C LTR MaLR 1 467 0 657 304 108 65 chr1 56722636 56723293 -185941060 - L2 LINE L2 -2073 1241 551 2171 65 25 11 chr1 56723310 56723586 -185940767 + AluSx SINE Alu 1 280 -32 2363 52 0 11 chr1 56723644 56723849 -185940504 - AluY SINE Alu 0 337 135 2462 64 0 3 chr1 56723849 56724145 -185940208 - AluY SINE Alu -16 295 1 2363 52 0 11 chr1 56724145 56724279 -185940074 - AluY SINE Alu -202 135 1 186 71 0 0 chr1 56724498 56724526 -185939827 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 261 342 75 17 chr1 56724953 56725073 -185939280 + L2 LINE L2 3187 3313 0 1881 125 62 14 chr1 56725076 56725365 -185938988 + AluJb SINE Alu 1 303 -9 1135 253 29 19 chr1 56726216 56726528 -185937825 - L1MD2 LINE L1 -40 6319 6005 2373 86 0 3 chr1 56726639 56726941 -185937412 - AluSg SINE Alu -9 301 1 841 264 41 27 chr1 56727207 56727502 -185936851 - MLT1I LTR MaLR -17 392 94 1557 134 17 0 chr1 56727667 56727898 -185936455 + AluSx SINE Alu 61 295 -17 267 103 0 0 chr1 56727898 56727937 -185936416 + (CATA)n Simple_repeat Simple_repeat 2 40 0 683 314 98 14 chr1 56728132 56728489 -185935864 - MLT1J LTR MaLR -87 424 38 570 225 163 0 chr1 56728489 56728618 -185935735 + FRAM SINE Alu 1 150 -26 251 291 82 27 chr1 56728623 56728733 -185935620 - MIR SINE MIR -127 135 20 260 286 86 23 chr1 56729096 56729271 -185935082 - L1ME4a LINE L1 -6 6115 5930 347 203 0 0 chr1 56729690 56729759 -185934594 + MER94 DNA DNA 4 72 -62 578 239 20 35 chr1 56730100 56730255 -185934098 + MER114 LTR ERV 5 158 -490 1862 107 80 50 chr1 56730255 56730554 -185933799 + AluSq SINE Alu 1 308 -5 578 239 20 35 chr1 56730554 56730599 -185933754 + MER114 LTR ERV 158 202 -446 238 224 0 0 chr1 56730629 56730678 -185933675 - Alu SINE Alu -171 131 83 415 171 0 0 chr1 56730698 56730774 -185933579 + MER114 LTR ERV 259 334 -314 2204 113 0 22 chr1 56730777 56731088 -185933265 - AluSq SINE Alu -9 304 1 1791 101 4 0 chr1 56731290 56731527 -185932826 + AluSq SINE Alu 54 291 -22 655 176 112 11 chr1 56731553 56731741 -185932612 + MER114 LTR ERV 421 627 -21 801 173 0 15 chr1 56731755 56731888 -185932465 - FLAM_A SINE Alu -2 131 1 44 0 0 0 chr1 56732883 56732927 -185931426 + AT_rich Low_complexity Low_complexity 1 44 0 806 156 0 31 chr1 56732927 56733055 -185931298 - FLAM_C SINE Alu -19 124 1 1670 194 0 14 chr1 56733214 56733507 -185930846 - AluJb SINE Alu -20 292 4 2010 131 3 3 chr1 56733519 56733809 -185930544 - AluSc SINE Alu -19 290 1 378 0 0 0 chr1 56733894 56733936 -185930417 + (CA)n Simple_repeat Simple_repeat 2 43 0 1651 216 52 5 chr1 56733976 56734398 -185929955 - MER44D DNA MER2_type -108 497 1 1977 101 4 19 chr1 56734569 56734837 -185929516 + AluSx SINE Alu 1 264 -48 271 317 137 19 chr1 56734937 56735098 -185929255 + L2 LINE L2 2887 3066 -206 1787 182 3 3 chr1 56735150 56735447 -185928906 - AluJo SINE Alu -15 297 1 466 146 25 2 chr1 56736378 56736490 -185927863 - LTR37B LTR ERV1 0 468 312 2163 117 10 0 chr1 56736523 56736830 -185927523 + AluSq SINE Alu 1 310 -3 236 242 30 0 chr1 56736859 56736925 -185927428 - LTR37A LTR ERV1 -241 185 118 255 195 61 24 chr1 56737099 56737181 -185927172 - MER31-int LTR ERV1 -741 4195 4111 759 279 45 45 chr1 56737306 56737732 -185926621 - MER31-int LTR ERV1 -876 4060 3635 21020 56 2 4 chr1 56737750 56740612 -185923741 + L1P LINE L1 1029 3885 -2261 2181 50 0 0 chr1 56740607 56740909 -185923444 + L1PA5 LINE L1 3123 3424 -2722 * 7230 51 3 0 chr1 56740909 56742644 -185921709 + L1PA5 LINE L1 4430 6146 -8 421 185 83 102 chr1 56742736 56742941 -185921412 - MER31-int LTR ERV1 -1407 3529 3329 198 0 0 0 chr1 56743732 56743754 -185920599 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 417 250 109 65 chr1 56745074 56745209 -185919144 + MIR3 SINE MIR 10 157 -51 1556 113 13 9 chr1 56745209 56745438 -185918915 + MER30 DNA MER1_type 1 230 0 417 250 109 65 chr1 56745438 56745486 -185918867 + MIR3 SINE MIR 157 201 -7 277 314 139 0 chr1 56746441 56746527 -185917826 - L2 LINE L2 -6 3266 3169 2245 123 0 7 chr1 56746663 56746971 -185917382 - AluSx SINE Alu -6 306 1 216 329 47 12 chr1 56747128 56747213 -185917140 - MIR SINE MIR -149 113 26 2075 131 6 6 chr1 56748176 56748488 -185915865 - AluSx SINE Alu 0 312 1 1627 193 3 7 chr1 56749074 56749364 -185914989 + AluJb SINE Alu 1 289 -23 2237 140 15 3 chr1 56749425 56749754 -185914599 - MER1B DNA MER1_type -4 333 1 1087 240 59 56 chr1 56749812 56750440 -185913913 - L1MC4a LINE L1 -799 5347 5216 676 230 0 15 chr1 56750450 56750585 -185913768 - FLAM_A SINE Alu 0 133 1 22 0 0 0 chr1 56750619 56750641 -185913712 + AT_rich Low_complexity Low_complexity 1 22 0 1398 133 5 9 chr1 56750683 56750901 -185913452 - AluSq SINE Alu -3 310 94 1381 115 0 0 chr1 56751014 56751196 -185913157 - AluSx SINE Alu -130 182 1 577 169 195 8 chr1 56751199 56751317 -185913036 - AluJb SINE Alu -172 140 1 622 199 116 0 chr1 56751317 56751463 -185912890 - L1MD2 LINE L1 -316 6043 5881 701 173 0 0 chr1 56751474 56751584 -185912769 - FRAM SINE Alu -63 113 4 1702 177 22 35 chr1 56751605 56751972 -185912381 - MLT1A1 LTR MaLR 0 365 4 1406 177 22 129 chr1 56751972 56752360 -185911993 - L1MD2 LINE L1 -489 5870 5537 801 159 0 15 chr1 56752360 56752492 -185911861 - FLAM_A SINE Alu 0 133 4 1406 177 22 129 chr1 56752492 56752560 -185911793 - L1MD2 LINE L1 -822 5537 5463 1119 222 56 19 chr1 56752572 56752892 -185911461 - L1MD2 LINE L1 -1162 4984 4653 387 203 7 65 chr1 56752867 56752913 -185911440 - L1MC4a LINE L1 -1116 5030 4983 * 2283 106 3 3 chr1 56752913 56753214 -185911139 - AluSp SINE Alu -12 301 1 387 203 7 65 chr1 56753214 56753305 -185911048 - L1MC4a LINE L1 -1163 4983 4901 769 194 0 0 chr1 56753503 56753632 -185910721 + FLAM_C SINE Alu 1 129 -4 19378 163 22 24 chr1 56753820 56755829 -185908524 + L1PA13 LINE L1 1320 3332 -3482 1915 125 66 0 chr1 56755829 56756101 -185908252 + AluSg SINE Alu 1 290 -20 19378 163 22 24 chr1 56756101 56756583 -185907770 + L1PA13 LINE L1 3332 3814 -3000 234 0 0 0 chr1 56756583 56756609 -185907744 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 19378 163 22 24 chr1 56756609 56757269 -185907084 + L1PA13 LINE L1 3814 4474 -2340 2343 85 10 0 chr1 56757269 56757564 -185906789 + AluSp SINE Alu 1 298 -15 19378 163 22 24 chr1 56757564 56758351 -185906002 + L1PA13 LINE L1 4474 5261 -1553 595 90 0 0 chr1 56758351 56758429 -185905924 - AluSg/x SINE Alu -16 294 217 19378 163 22 24 chr1 56758429 56759262 -185905091 + L1PA13 LINE L1 5261 6148 -666 2166 129 13 3 chr1 56759262 56759564 -185904789 + AluSx SINE Alu 1 305 -7 19378 163 22 24 chr1 56759564 56760224 -185904129 + L1PA13 LINE L1 6148 6808 -6 23 0 0 0 chr1 56760224 56760247 -185904106 + AT_rich Low_complexity Low_complexity 1 23 0 730 98 41 16 chr1 56760283 56760406 -185903947 - L1MB3 LINE L1 -2 6181 6056 2263 98 3 0 chr1 56760406 56760702 -185903651 - AluY SINE Alu -14 297 1 2090 137 0 3 chr1 56760707 56761000 -185903353 - AluSx SINE Alu -20 292 1 359 292 24 61 chr1 56761000 56761099 -185903254 - L1M4 LINE L1 -2354 3792 3691 1917 174 0 16 chr1 56761099 56761415 -185902938 - AluSq SINE Alu -2 311 1 359 292 24 61 chr1 56761415 56761626 -185902727 - L1M4 LINE L1 -2455 3691 3483 210 138 0 0 chr1 56761670 56761699 -185902654 - MER91 DNA MER1_type -122 68 40 934 230 82 16 chr1 56761781 56762038 -185902315 - MLT1I LTR MaLR -28 381 108 424 263 156 15 chr1 56762219 56762424 -185901929 - L1MDa LINE L1 -4505 2035 1802 1241 243 61 9 chr1 56762558 56763003 -185901350 - L1M4 LINE L1 -2555 3591 3124 447 160 276 58 chr1 56763208 56763219 -185901134 - L2 LINE L2 -1159 2155 2148 1585 196 13 23 chr1 56763219 56763520 -185900833 + AluJb SINE Alu 1 298 -14 447 160 276 58 chr1 56763520 56763664 -185900689 - L2 LINE L2 -1166 2148 1966 350 297 23 17 chr1 56763666 56763841 -185900512 - L1MC4 LINE L1 -124 7918 7743 549 114 0 0 chr1 56763848 56763927 -185900426 - AluSg/x SINE Alu -17 293 215 1135 101 0 38 chr1 56763927 56764086 -185900267 - AluSq SINE Alu -160 153 1 902 209 60 46 chr1 56764119 56764421 -185899932 - L1MC4 LINE L1 -259 7783 7478 1025 253 27 0 chr1 56764480 56764773 -185899580 - L1M4 LINE L1 -2564 3582 3282 1917 142 36 7 chr1 56764773 56765075 -185899278 - AluSx SINE Alu -1 311 1 1080 264 67 14 chr1 56765149 56765569 -185898784 - L1MC4 LINE L1 -707 7335 6894 24 32 0 0 chr1 56765658 56765689 -185898664 + AT_rich Low_complexity Low_complexity 1 31 0 1330 171 5 0 chr1 56765689 56765906 -185898447 - AluJb SINE Alu -26 286 69 571 255 149 19 chr1 56766150 56766311 -185898042 + MER5A DNA MER1_type 5 186 -3 1850 143 0 4 chr1 56766461 56766733 -185897620 + AluJb SINE Alu 21 291 -21 312 353 19 26 chr1 56766935 56767091 -185897262 - MER5A DNA MER1_type -18 171 17 1115 103 7 0 chr1 56767170 56767316 -185897037 + FRAM SINE Alu 1 146 -30 243 0 0 0 chr1 56767319 56767346 -185897007 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2236 115 7 0 chr1 56768188 56768484 -185895869 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr1 56769182 56769204 -185895149 + AT_rich Low_complexity Low_complexity 1 22 0 2270 104 3 0 chr1 56770145 56770434 -185893919 - AluSx SINE Alu -22 290 1 21 36 0 0 chr1 56770436 56770464 -185893889 + AT_rich Low_complexity Low_complexity 1 28 0 1930 155 0 10 chr1 56770655 56770951 -185893402 + AluJo SINE Alu 1 293 -19 2359 100 0 3 chr1 56772202 56772503 -185891850 - AluSx SINE Alu -12 300 1 1279 220 85 45 chr1 56772649 56773072 -185891281 - LTR40b LTR ERVL -2 460 21 469 239 39 32 chr1 56773281 56773436 -185890917 - MLT2E LTR ERVL -2 626 471 2187 122 0 10 chr1 56773687 56773999 -185890354 - AluSg1 SINE Alu 0 309 1 539 187 81 16 chr1 56774006 56774129 -185890224 - FLAM_A SINE Alu -2 131 1 1061 263 33 48 chr1 56774131 56774462 -185889891 - MLT2E LTR ERVL -297 331 6 2110 151 0 0 chr1 56774498 56774797 -185889556 - AluSx SINE Alu -13 299 1 2255 272 91 19 chr1 56774865 56774982 -185889371 + L1M4c LINE L1 396 503 -5880 1785 157 49 7 chr1 56774982 56775269 -185889084 - AluJo SINE Alu -13 299 1 2255 272 91 19 chr1 56775269 56777124 -185887229 + L1M4c LINE L1 503 2056 -4327 2079 121 19 32 chr1 56777124 56777439 -185886914 + AluSx SINE Alu 1 311 -1 2255 272 91 19 chr1 56777439 56777533 -185886820 + L1M4c LINE L1 2056 2142 -4241 841 157 8 0 chr1 56777598 56777719 -185886634 + FLAM_C SINE Alu 3 124 -19 1571 137 139 82 chr1 56777768 56778184 -185886169 - LTR47A LTR ERVL 0 452 13 2503 209 48 50 chr1 56778210 56778460 -185885893 + L1M4c LINE L1 2079 2328 -4054 1962 151 7 0 chr1 56778460 56778759 -185885594 + AluJb SINE Alu 3 303 -9 2503 209 48 50 chr1 56778759 56779429 -185884924 + L1M4c LINE L1 2328 2991 -3391 231 157 0 0 chr1 56779431 56779482 -185884871 + T-rich Low_complexity Low_complexity 1 51 0 1758 206 25 17 chr1 56780532 56781009 -185883344 + L1M4c LINE L1 2965 3445 -2937 5949 144 29 8 chr1 56781017 56782292 -185882061 - L1MA4 LINE L1 -8 6292 4998 267 150 0 0 chr1 56782292 56782332 -185882021 + Charlie3 DNA MER1_type 1 40 -2670 2024 172 24 42 chr1 56782332 56782438 -185881915 + L1MA9 LINE L1 4585 4691 -1621 1800 156 3 3 chr1 56782438 56782745 -185881608 - AluJb SINE Alu 0 307 1 2024 172 24 42 chr1 56782745 56783274 -185881079 + L1MA9 LINE L1 4691 5778 -534 * 7784 178 7 47 chr1 56783267 56783490 -185880863 + L1M4c LINE L1 3525 3755 -2627 2229 104 0 13 chr1 56783490 56783788 -185880565 + AluSg SINE Alu 1 294 -16 7784 178 7 47 chr1 56783788 56784265 -185880088 + L1M4c LINE L1 3755 4249 -2133 2297 82 7 7 chr1 56784265 56784557 -185879796 + AluSc SINE Alu 1 292 -17 7784 178 7 47 chr1 56784557 56784826 -185879527 + L1M4c LINE L1 4249 4527 -1855 1986 114 37 4 chr1 56784826 56785137 -185879216 + AluSx SINE Alu 1 320 0 7784 178 7 47 chr1 56785137 56785218 -185879135 + L1M4c LINE L1 4527 4610 -1772 1650 135 120 8 chr1 56785218 56785484 -185878869 + AluSx SINE Alu 1 296 -16 7784 178 7 47 chr1 56785484 56785840 -185878513 + L1M4c LINE L1 4610 4856 -1526 1886 162 26 3 chr1 56785840 56786143 -185878210 + AluSx SINE Alu 1 310 -2 7784 178 7 47 chr1 56786143 56786491 -185877862 + L1M4c LINE L1 4856 5216 -1166 2331 160 34 54 chr1 56786516 56787017 -185877336 + L1MA9 LINE L1 5784 6274 -38 2193 120 3 0 chr1 56787061 56787352 -185877001 - AluSx SINE Alu -20 292 1 318 261 104 8 chr1 56787524 56787658 -185876695 - ERVL LTR ERVL -269 5495 5349 11169 248 64 34 chr1 56787663 56788543 -185875810 - ERVL LTR ERVL -900 4864 4012 2257 95 3 3 chr1 56788543 56788911 -185875442 - AluSx SINE Alu 0 312 1 11169 248 64 34 chr1 56788911 56791112 -185873241 - ERVL LTR ERVL -1752 4012 1691 512 307 128 55 chr1 56791174 56791610 -185872743 - L1ME LINE L1 -5591 479 12 1276 104 0 0 chr1 56791694 56791858 -185872495 - AluSp SINE Alu -11 302 139 1809 129 8 129 chr1 56792187 56792583 -185871770 + MER7A DNA MER2_type 1 346 0 573 203 20 14 chr1 56792605 56792753 -185871600 - L1MEc LINE L1 -4406 1990 1842 1088 129 52 0 chr1 56792762 56792889 -185871464 + AluSx SINE Alu 1 139 -173 189 0 0 0 chr1 56792889 56792910 -185871443 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1088 129 52 0 chr1 56792910 56792937 -185871416 + AluSx SINE Alu 139 163 -149 2571 70 0 0 chr1 56793041 56793343 -185871010 - AluY SINE Alu -9 302 1 1304 169 117 7 chr1 56793808 56793886 -185870467 + L1P LINE L1 2766 2834 -3312 1929 139 49 0 chr1 56793886 56794173 -185870180 + AluSq SINE Alu 1 301 -12 1304 169 117 7 chr1 56794173 56794367 -185869986 + L1P LINE L1 2834 3068 -3078 2289 92 0 7 chr1 56794476 56794768 -185869585 - AluSc SINE Alu -19 290 1 483 18 0 0 chr1 56795963 56796019 -185868334 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 2134 238 56 97 chr1 56796079 56796241 -185868112 - L1MEc LINE L1 -5453 943 776 2022 145 3 0 chr1 56796241 56796537 -185867816 - AluSx SINE Alu -15 297 1 2134 238 56 97 chr1 56796537 56796707 -185867646 - L1MEc LINE L1 -5620 776 601 1910 131 0 0 chr1 56796707 56796975 -185867378 + AluSx SINE Alu 1 268 -44 2134 238 56 97 chr1 56796975 56797587 -185866766 - L1MEc LINE L1 -5795 601 37 322 316 86 17 chr1 56797953 56798070 -185866283 + L2 LINE L2 3116 3240 -32 743 304 55 48 chr1 56798137 56798373 -185865980 + L2 LINE L2 2520 2753 -560 1727 176 7 0 chr1 56798373 56798662 -185865691 + AluJo SINE Alu 3 293 -19 743 304 55 48 chr1 56798662 56798793 -185865560 + L2 LINE L2 2753 2882 -431 2370 94 3 3 chr1 56798793 56799100 -185865253 - AluSp SINE Alu -6 307 1 743 304 55 48 chr1 56799100 56799257 -185865096 + L2 LINE L2 2882 3048 -265 1352 231 26 26 chr1 56799286 56799340 -185865013 + L1MC4 LINE L1 6529 6582 -1314 207 0 0 0 chr1 56799340 56799363 -185864990 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1352 231 26 26 chr1 56799363 56799748 -185864605 + L1MC4 LINE L1 6582 7051 -845 1111 143 0 0 chr1 56799748 56799909 -185864444 + FRAM SINE Alu 1 160 -16 3951 103 217 22 chr1 56799930 56800621 -185863732 + LTR12 LTR ERV1 1 826 0 1843 159 14 37 chr1 56800624 56800977 -185863376 - L1MB8 LINE L1 -97 6081 5737 1770 163 3 23 chr1 56801339 56801640 -185862713 + AluJo SINE Alu 1 295 -17 2040 132 20 0 chr1 56801644 56801947 -185862406 + AluSx SINE Alu 1 309 -3 631 221 0 16 chr1 56802230 56802388 -185861965 - FLAM_A SINE Alu 0 133 1 1299 197 140 0 chr1 56802397 56802661 -185861692 - AluJo SINE Alu 0 302 2 238 296 66 60 chr1 56802663 56802821 -185861532 - L1M4 LINE L1 -2658 3488 3332 2303 88 0 23 chr1 56802821 56803127 -185861226 + AluSq SINE Alu 1 299 -14 238 296 66 60 chr1 56803127 56803285 -185861068 - L1M4 LINE L1 -2814 3332 3170 3504 123 13 52 chr1 56803292 56803994 -185860359 + L1MA4A LINE L1 5062 5750 -553 2212 90 7 23 chr1 56803994 56804295 -185860058 + AluSx SINE Alu 1 296 -16 3504 123 13 52 chr1 56804295 56804372 -185859981 + L1MA4A LINE L1 5750 5828 -475 2221 140 0 0 chr1 56804374 56804682 -185859671 + AluSx SINE Alu 1 308 -4 807 131 0 46 chr1 56804689 56804819 -185859534 + FLAM_A SINE Alu 1 124 -9 1820 171 14 0 chr1 56805911 56806204 -185858149 - AluJo SINE Alu -13 299 3 436 330 24 14 chr1 56806423 56806635 -185857718 + MIR SINE MIR 38 251 -11 766 162 0 70 chr1 56806645 56806787 -185857566 + AluSq/x SINE Alu 2 133 -180 2165 123 7 10 chr1 56806870 56807180 -185857173 + AluSx SINE Alu 1 309 -3 688 180 113 0 chr1 56807189 56807339 -185857014 + Tigger7 DNA MER2_type 2314 2480 -7 39 38 0 0 chr1 56807651 56807704 -185856649 + AT_rich Low_complexity Low_complexity 1 53 0 402 134 30 0 chr1 56807763 56807830 -185856523 - AluJ/FRAM SINE Alu -20 292 224 1531 157 99 4 chr1 56807999 56808261 -185856092 - AluJb SINE Alu -25 287 1 247 222 0 32 chr1 56808261 56808324 -185856029 + MER5A DNA MER1_type 129 189 0 1610 172 3 20 chr1 56808667 56808964 -185855389 - AluJo SINE Alu -20 292 1 2491 56 16 3 chr1 56809817 56810120 -185854233 - AluSp SINE Alu -6 307 1 2006 147 3 0 chr1 56810384 56810676 -185853677 - AluSx SINE Alu -19 293 1 242 326 62 62 chr1 56810733 56810830 -185853523 + L2 LINE L2 2644 2743 -571 2403 80 0 0 chr1 56810830 56811117 -185853236 + AluSc SINE Alu 1 287 -22 242 326 62 62 chr1 56811117 56811163 -185853190 + L2 LINE L2 2742 2787 -527 1973 113 233 10 chr1 56811365 56811782 -185852571 - Tigger3(Golem) DNA MER2_type -48 2981 2472 1243 141 20 94 chr1 56811776 56811824 -185852529 - Tigger3(Golem) DNA MER2_type -995 236 186 * 2006 110 14 27 chr1 56811824 56812116 -185852237 + AluSq SINE Alu 1 288 -25 1243 141 20 94 chr1 56812116 56812229 -185852124 - Tigger3(Golem) DNA MER2_type -1045 186 98 2359 77 17 0 chr1 56812229 56812527 -185851826 - AluSp SINE Alu -9 304 2 1243 141 20 94 chr1 56812527 56812619 -185851734 - Tigger3(Golem) DNA MER2_type -1133 98 1 528 127 37 22 chr1 56812886 56813020 -185851333 + CT-rich Low_complexity Low_complexity 4 139 0 1443 158 23 39 chr1 56813024 56813283 -185851070 - AluJb SINE Alu -27 285 31 244 183 0 113 chr1 56813527 56813569 -185850784 - MER5A DNA MER1_type 0 189 157 2233 108 3 3 chr1 56813569 56813865 -185850488 - AluSx SINE Alu -16 296 1 244 183 0 113 chr1 56813865 56813893 -185850460 - MER5A DNA MER1_type -32 157 127 1646 122 41 0 chr1 56813923 56814168 -185850185 + AluSx SINE Alu 58 312 0 494 189 131 0 chr1 56814170 56814292 -185850061 - MER5A DNA MER1_type -50 139 2 189 241 71 27 chr1 56814627 56814739 -185849614 - MIR SINE MIR -56 206 90 2350 90 3 6 chr1 56814800 56815111 -185849242 + AluSp SINE Alu 1 310 -3 707 241 122 17 chr1 56815741 56815978 -185848375 + MIR SINE MIR 1 262 0 2148 103 14 0 chr1 56816098 56816389 -185847964 - AluY SINE Alu -16 295 1 325 282 0 0 chr1 56817490 56817571 -185846782 - MIR SINE MIR -104 104 33 2554 63 7 0 chr1 56817967 56818266 -185846087 + AluSc SINE Alu 1 301 -8 2235 98 31 0 chr1 56818701 56818987 -185845366 - AluSc SINE Alu -14 295 1 259 267 0 0 chr1 56819260 56819320 -185845033 - Charlie8 DNA MER1_type -990 1427 1368 694 226 42 26 chr1 56819325 56819515 -185844838 - Charlie8 DNA MER1_type -2197 220 28 204 262 36 12 chr1 56820951 56821035 -185843318 + MIR SINE MIR 33 118 -90 391 283 135 63 chr1 56822561 56822879 -185841474 - L2 LINE L2 -1 3271 2931 313 246 0 88 chr1 56823043 56823157 -185841196 + MIR3 SINE MIR 94 197 -11 2337 87 14 0 chr1 56823614 56823901 -185840452 + AluSx SINE Alu 1 291 -21 1889 135 0 66 chr1 56823908 56824227 -185840126 + AluJo SINE Alu 1 298 -14 1556 184 43 23 chr1 56824316 56824620 -185839733 + AluJo SINE Alu 1 310 -2 1954 145 0 0 chr1 56824829 56825136 -185839217 - AluJb SINE Alu 0 307 1 251 253 127 0 chr1 56825255 56825334 -185839019 - MER103 DNA DNA -70 96 8 2420 93 3 0 chr1 56825472 56825772 -185838581 - AluSp SINE Alu -12 301 1 243 300 143 43 chr1 56825872 56826012 -185838341 - MIR SINE MIR -50 212 59 744 236 40 52 chr1 56826147 56826397 -185837956 + MIR SINE MIR 15 261 -1 321 187 120 0 chr1 56827001 56827076 -185837277 + MIR3 SINE MIR 107 190 -18 287 247 35 12 chr1 56827584 56827669 -185836684 + MIR SINE MIR 106 192 -70 296 261 182 28 chr1 56827905 56828081 -185836272 - MIR SINE MIR -3 259 57 2182 90 7 27 chr1 56829621 56829924 -185834429 - AluSx SINE Alu -17 295 1 516 285 154 21 chr1 56830031 56830645 -185833708 + L2 LINE L2 2510 3272 -41 208 312 54 54 chr1 56831114 56831335 -185833018 + L2 LINE L2 2924 3144 -128 1873 166 210 7 chr1 56831382 56831805 -185832548 + LTR22 LTR ERVK 1 509 0 240 290 90 62 chr1 56831935 56832080 -185832273 - MIR3 SINE MIR -21 187 39 763 144 0 0 chr1 56832232 56832343 -185832010 + FLAM_C SINE Alu 21 131 -12 280 277 59 36 chr1 56832483 56832694 -185831659 + MIR SINE MIR 15 225 -37 438 309 73 0 chr1 56832811 56832976 -185831377 + MER117 DNA MER1_type 13 189 -8 255 292 117 52 chr1 56833128 56833282 -185831071 + MLT1K LTR MaLR 13 176 -412 559 255 25 69 chr1 56833314 56833518 -185830835 + MLT1K LTR MaLR 316 510 -78 986 165 14 52 chr1 56833533 56833745 -185830608 - MER3 DNA MER1_type 0 209 6 251 353 25 25 chr1 56834280 56834402 -185829951 + MIR3 SINE MIR 33 154 -54 212 300 62 0 chr1 56835057 56835137 -185829216 + MIR SINE MIR 108 192 -70 251 226 81 0 chr1 56835236 56835298 -185829055 - MIR SINE MIR -79 183 117 183 288 61 0 chr1 56835724 56835790 -185828563 + MIR SINE MIR 79 148 -114 248 258 81 8 chr1 56836046 56836170 -185828183 + L2 LINE L2 2624 2756 -558 458 262 154 18 chr1 56836515 56836794 -185827559 - MER113 DNA MER1_type? -203 318 2 356 250 105 8 chr1 56836809 56836933 -185827420 - MIR SINE MIR -56 152 17 319 265 64 18 chr1 56837276 56837432 -185826921 - MIR SINE MIR -27 181 11 317 178 93 37 chr1 56837855 56837962 -185826391 + L2 LINE L2 2945 3057 -215 514 206 194 29 chr1 56838036 56838206 -185826147 + MER63A DNA MER1_type 11 208 -2 1193 143 27 49 chr1 56838754 56838977 -185825376 - MER20 DNA MER1_type -1 218 1 638 299 116 33 chr1 56839179 56839688 -185824665 - L2 LINE L2 -49 3223 2658 225 281 198 16 chr1 56839736 56839857 -185824496 - MER46C DNA MER2_type -74 264 122 2297 98 0 3 chr1 56839857 56840162 -185824191 + AluSx SINE Alu 1 304 -8 700 189 6 13 chr1 56840190 56840349 -185824004 - L1MB3 LINE L1 0 6183 6026 264 356 121 14 chr1 56840370 56840651 -185823702 + L2 LINE L2 1052 1362 -1952 2263 82 0 0 chr1 56840651 56840945 -185823408 - AluSx SINE Alu -18 294 1 333 155 0 0 chr1 56841186 56841244 -185823109 + (TG)n Simple_repeat Simple_repeat 2 59 0 240 324 0 0 chr1 56841263 56841331 -185823022 - L2 LINE L2 -213 3059 2992 474 234 63 2 chr1 56842177 56842334 -185822019 + L1MB7 LINE L1 5713 5894 -290 1365 104 126 4 chr1 56842432 56842663 -185821690 + AluSx SINE Alu 45 303 -9 22 56 0 0 chr1 56842803 56842839 -185821514 + AT_rich Low_complexity Low_complexity 1 36 0 296 294 35 94 chr1 56843077 56843332 -185821021 + MIR SINE MIR 14 253 -9 265 241 25 38 chr1 56844762 56844841 -185819512 + MIR SINE MIR 97 174 -88 211 313 88 14 chr1 56845504 56845664 -185818689 + MIR SINE MIR 32 203 -59 260 336 84 42 chr1 56846065 56846122 -185818231 + L2 LINE L2 2918 2971 -301 837 159 0 0 chr1 56846122 56846254 -185818099 + FLAM_C SINE Alu 1 132 -1 260 336 84 42 chr1 56846254 56846482 -185817871 + L2 LINE L2 2971 3215 -57 281 277 36 0 chr1 56846636 56846719 -185817634 + MIR SINE MIR 68 153 -109 295 294 55 34 chr1 56847149 56847295 -185817058 + MIR SINE MIR 51 199 -63 463 308 76 22 chr1 56848049 56848273 -185816080 + L2 LINE L2 2813 3048 -224 747 234 23 6 chr1 56848273 56848448 -185815905 + MER45A DNA AcHobo 1 178 0 272 253 25 0 chr1 56848548 56848627 -185815726 + L2 LINE L2 3187 3267 -5 216 266 58 43 chr1 56849048 56849187 -185815166 + L2 LINE L2 1321 1461 -1853 209 343 29 0 chr1 56849295 56849365 -185814988 + MIR SINE MIR 10 81 -181 328 182 60 75 chr1 56849721 56849861 -185814492 + MER20 DNA MER1_type 3 135 -84 2224 102 0 3 chr1 56849872 56850185 -185814168 + AluSx SINE Alu 1 312 0 758 263 156 99 chr1 56851064 56852053 -185812300 + HAL1 LINE L1 529 1573 -934 2208 113 3 0 chr1 56852084 56852393 -185811960 - AluSx SINE Alu 0 312 3 586 284 66 92 chr1 56852531 56852812 -185811541 + HAL1 LINE L1 1892 2179 -328 1745 114 9 108 chr1 56852812 56853153 -185811200 - AluJb SINE Alu 0 312 6 586 284 66 92 chr1 56853153 56853269 -185811084 + HAL1 LINE L1 2179 2280 -227 2319 100 0 3 chr1 56853269 56853579 -185810774 - AluSx SINE Alu -3 309 1 586 284 66 92 chr1 56853579 56853602 -185810751 + HAL1 LINE L1 2280 2302 -205 251 102 0 82 chr1 56853603 56853652 -185810701 + L1MB7 LINE L1 6128 6172 -12 575 241 106 39 chr1 56854768 56854975 -185809378 + L2 LINE L2 3081 3301 -12 378 0 0 0 chr1 56854980 56855022 -185809331 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 232 343 50 10 chr1 56855040 56855139 -185809214 + MIR3 SINE MIR 96 198 -10 237 236 33 105 chr1 56855246 56855406 -185808947 + L2 LINE L2 2258 2391 -923 809 156 0 22 chr1 56855406 56855541 -185808812 - FLAM_C SINE Alu -1 132 1 237 236 33 105 chr1 56855541 56855656 -185808697 + L2 LINE L2 2391 2513 -801 820 133 8 31 chr1 56855683 56855811 -185808542 - FLAM_C SINE Alu -10 133 9 2176 268 73 54 chr1 56855937 56856922 -185807431 - L1MEd LINE L1 -5000 1119 111 1865 123 3 38 chr1 56856922 56857238 -185807115 - AluSq SINE Alu -8 305 1 2176 268 73 54 chr1 56857238 56857310 -185807043 - L1MEd LINE L1 -6008 111 42 429 304 43 27 chr1 56857315 56857380 -185806973 + L2 LINE L2 2648 2710 -604 2135 112 3 0 chr1 56857380 56857676 -185806677 + AluSp SINE Alu 3 299 -14 429 304 43 27 chr1 56857676 56857794 -185806559 + L2 LINE L2 2710 2834 -480 186 275 220 0 chr1 56857792 56857883 -185806470 + L2 LINE L2 3162 3272 0 * 404 269 50 60 chr1 56857902 56858103 -185806250 - MIR SINE MIR -42 220 22 268 313 50 86 chr1 56858416 56858777 -185805576 - L2 LINE L2 -5 3267 2920 495 296 92 10 chr1 56859873 56860079 -185804274 + MIR SINE MIR 24 246 -16 2184 94 7 0 chr1 56860105 56860402 -185803951 - AluSx SINE Alu -13 299 1 805 147 0 0 chr1 56860471 56860587 -185803766 + FLAM_C SINE Alu 1 116 -17 225 0 0 0 chr1 56860587 56860612 -185803741 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 455 289 123 26 chr1 56860621 56860929 -185803424 + L1ME3 LINE L1 5606 5943 -219 370 250 55 52 chr1 56861063 56861236 -185803117 + L1MC5 LINE L1 7810 7992 -3 274 335 71 13 chr1 56861744 56861899 -185802454 - MIR3 SINE MIR -41 167 4 444 266 28 28 chr1 56862397 56862540 -185801813 + MIR SINE MIR 32 174 -88 40 79 0 0 chr1 56862735 56862824 -185801529 + GC_rich Low_complexity Low_complexity 1 89 0 34 55 0 0 chr1 56862980 56863035 -185801318 + GC_rich Low_complexity Low_complexity 1 55 0 425 284 31 8 chr1 56863493 56863620 -185800733 - MIR SINE MIR -112 150 21 226 337 43 0 chr1 56864031 56864123 -185800230 + L3 LINE CR1 1394 1489 -88 276 330 26 46 chr1 56864228 56864422 -185799931 - L2 LINE L2 -213 3059 2870 298 230 0 14 chr1 56864429 56864503 -185799850 + L2 LINE L2 2905 2977 -295 250 154 62 15 chr1 56864534 56864597 -185799756 - MER69 DNA AcHobo -20 2506 2441 400 138 0 0 chr1 56864597 56864655 -185799698 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 2044 119 10 26 chr1 56864655 56864965 -185799388 - AluSx SINE Alu -7 305 1 3164 109 26 28 chr1 56864984 56865338 -185799015 + Tigger4(Zombi) DNA MER2_type 2200 2554 -177 2222 90 3 26 chr1 56865338 56865650 -185798703 + AluSp SINE Alu 1 305 -8 3164 109 26 28 chr1 56865650 56865828 -185798525 + Tigger4(Zombi) DNA MER2_type 2554 2731 0 436 193 23 11 chr1 56865834 56865922 -185798431 - MER69 DNA AcHobo -2430 96 8 401 245 37 104 chr1 56865967 56866130 -185798223 + L2 LINE L2 2992 3143 -129 206 379 0 29 chr1 56866302 56866405 -185797948 - MIR SINE MIR 0 262 163 * 405 192 56 38 chr1 56866384 56866484 -185797869 + MIR SINE MIR 101 201 -23 1742 137 23 33 chr1 56866484 56866629 -185797724 + AluJb SINE Alu 1 146 -166 2122 112 3 0 chr1 56866629 56866923 -185797430 + AluSp SINE Alu 1 295 -18 1742 137 23 33 chr1 56866923 56867084 -185797269 + AluJb SINE Alu 146 304 -8 405 192 56 38 chr1 56867084 56867096 -185797257 + MIR SINE MIR 201 211 -13 188 216 59 0 chr1 56867131 56867182 -185797171 - MIR SINE MIR -101 161 108 2065 104 0 41 chr1 56867674 56867991 -185796362 + AluSx SINE Alu 1 304 -8 218 340 11 11 chr1 56867991 56868085 -185796268 - MIR SINE MIR -52 210 117 305 234 39 0 chr1 56868272 56868349 -185796004 + MIR SINE MIR 107 186 -76 345 226 41 75 chr1 56868712 56868858 -185795495 + MIR3 SINE MIR 66 206 -2 420 284 43 7 chr1 56869156 56869297 -185795056 + MIR SINE MIR 111 256 -6 895 146 20 7 chr1 56869303 56869454 -185794899 + AluJo SINE Alu 21 173 -139 1187 244 66 57 chr1 56869455 56869832 -185794521 + L2 LINE L2 2666 3038 -275 2272 89 3 3 chr1 56869832 56870134 -185794219 - AluSx SINE Alu -10 302 1 1187 244 66 57 chr1 56870134 56870288 -185794065 + L2 LINE L2 3038 3206 -107 549 202 123 0 chr1 56870288 56870402 -185793951 - FLAM_A SINE Alu -5 128 1 1187 244 66 57 chr1 56870402 56870503 -185793850 + L2 LINE L2 3206 3305 -8 290 376 91 6 chr1 56870636 56870801 -185793552 + MIR SINE MIR 33 211 -51 2242 113 3 0 chr1 56871000 56871310 -185793043 - AluSx SINE Alu -1 311 1 939 97 0 0 chr1 56872049 56872173 -185792180 + AluJb SINE Alu 1 124 -188 1923 162 49 5 chr1 56872269 56872622 -185791731 + MLT1A1 LTR MaLR 1 394 -2 827 215 6 0 chr1 56873129 56873292 -185791061 - MIR SINE MIR -51 211 48 2029 102 35 0 chr1 56873297 56873582 -185790771 + AluSq SINE Alu 1 295 -18 258 360 39 13 chr1 56874285 56874438 -185789915 - L3 LINE CR1 -5 1572 1416 382 253 73 36 chr1 56874756 56874949 -185789404 - MIR SINE MIR -19 243 34 261 254 177 31 chr1 56875732 56875862 -185788491 + L2 LINE L2 2712 2860 -454 355 320 60 27 chr1 56875987 56876137 -185788216 + L2 LINE L2 3159 3313 0 701 110 153 25 chr1 56876191 56876309 -185788044 - FLAM_C SINE Alu 0 133 1 555 270 180 0 chr1 56876423 56876656 -185787697 - L2 LINE L2 -755 2559 2285 39 50 0 0 chr1 56877451 56877511 -185786842 + GC_rich Low_complexity Low_complexity 1 60 0 294 264 177 12 chr1 56878526 56878722 -185785631 - MIR SINE MIR -31 231 3 804 236 35 10 chr1 56879606 56879809 -185784544 - MIR SINE MIR -39 223 16 794 234 112 0 chr1 56879941 56880129 -185784224 + MIR SINE MIR 33 241 -21 1017 147 12 0 chr1 56880345 56880508 -185783845 - AluJo/FRAM SINE Alu -19 293 129 1796 152 10 30 chr1 56880347 56880644 -185783709 - AluJo SINE Alu -21 291 1 345 320 167 8 chr1 56880657 56880813 -185783540 - MIR SINE MIR -74 188 10 921 229 36 87 chr1 56882740 56882789 -185781564 + MIR SINE MIR 2 52 -210 2144 80 3 67 chr1 56882789 56883103 -185781250 - AluSq SINE Alu -19 294 1 921 229 36 87 chr1 56883103 56883328 -185781025 + MIR SINE MIR 52 262 0 2063 115 7 10 chr1 56883329 56883624 -185780729 - AluSx SINE Alu -18 294 1 916 227 16 5 chr1 56883797 56883982 -185780371 + MER5A DNA MER1_type 2 188 -1 303 331 80 15 chr1 56883982 56884239 -185780114 + L2 LINE L2 2473 2746 -568 1386 197 58 4 chr1 56884398 56884657 -185779696 + AluJo SINE Alu 26 298 -14 183 265 41 0 chr1 56884718 56884767 -185779586 - MIR SINE MIR -19 243 193 772 192 183 22 chr1 56884903 56885127 -185779226 + MIR SINE MIR 3 262 0 629 332 4 44 chr1 56885192 56885442 -185778911 + MIR SINE MIR 8 247 -15 23 0 0 0 chr1 56885486 56885509 -185778844 + AT_rich Low_complexity Low_complexity 1 23 0 364 213 64 85 chr1 56885522 56885663 -185778690 - MIR SINE MIR -77 185 48 2000 116 4 4 chr1 56885714 56885989 -185778364 - AluSx SINE Alu -17 295 21 1969 118 24 10 chr1 56885995 56886283 -185778070 - AluJb SINE Alu -18 294 3 2206 104 3 7 chr1 56886290 56886588 -185777765 - AluSx SINE Alu -15 297 1 253 258 61 0 chr1 56886668 56886734 -185777619 - MIR SINE MIR 0 262 193 204 118 29 0 chr1 56887093 56887127 -185777226 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 24 53 0 0 chr1 56888118 56888156 -185776197 + AT_rich Low_complexity Low_complexity 1 38 0 2079 132 7 0 chr1 56889504 56889800 -185774553 + AluSx SINE Alu 1 298 -14 331 99 14 14 chr1 56889800 56889871 -185774482 + (TA)n Simple_repeat Simple_repeat 2 72 0 2016 85 8 4 chr1 56890148 56890408 -185773945 - AluSp SINE Alu -14 299 39 1200 204 127 11 chr1 56890440 56890715 -185773638 + AluJb SINE Alu 1 307 -5 2120 115 16 0 chr1 56891107 56891411 -185772942 - AluSx SINE Alu -3 309 1 2305 118 0 0 chr1 56891571 56891876 -185772477 + AluSc SINE Alu 1 305 -4 2138 97 35 0 chr1 56891885 56892173 -185772180 + AluSp SINE Alu 1 298 -15 726 131 131 5 chr1 56892313 56892494 -185771859 - AluJb SINE Alu -15 297 1 300 336 66 38 chr1 56894613 56894800 -185769553 - MIR3 SINE MIR -67 195 6 22 0 0 0 chr1 56894954 56894976 -185769377 + AT_rich Low_complexity Low_complexity 1 22 0 2319 107 0 0 chr1 56895423 56895723 -185768630 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr1 56895896 56895917 -185768436 + AT_rich Low_complexity Low_complexity 1 21 0 1878 138 30 27 chr1 56896908 56897206 -185767147 - AluJo SINE Alu -13 299 1 1779 159 21 7 chr1 56897250 56897539 -185766814 - AluJb SINE Alu -19 293 1 819 218 37 11 chr1 56897654 56897842 -185766511 - MER20 DNA MER1_type -23 196 4 2040 153 0 3 chr1 56898480 56898775 -185765578 - AluJb SINE Alu -18 294 1 182 350 59 98 chr1 56899127 56899330 -185765023 + L2 LINE L2 2991 3185 -87 2076 123 7 3 chr1 56899677 56899977 -185764376 + AluSx SINE Alu 1 301 -11 2525 80 0 0 chr1 56900257 56900569 -185763784 + AluSx SINE Alu 1 312 0 2099 109 22 19 chr1 56900992 56901303 -185763050 - AluSx SINE Alu 0 312 1 22 35 0 0 chr1 56901939 56901968 -185762385 + AT_rich Low_complexity Low_complexity 1 29 0 587 222 210 0 chr1 56902142 56902309 -185762044 + L2 LINE L2 3103 3304 -9 5823 119 54 81 chr1 56902469 56902700 -185761653 + Tigger3b DNA MER2_type 5 241 -2787 1176 176 34 21 chr1 56902700 56902933 -185761420 - MER46A DNA MER2_type 0 236 1 5823 119 54 81 chr1 56902933 56903032 -185761321 + Tigger3b DNA MER2_type 241 341 -2687 2156 128 7 0 chr1 56903032 56903322 -185761031 - AluSx SINE Alu -16 296 5 5823 119 54 81 chr1 56903322 56903334 -185761019 + Tigger3b DNA MER2_type 341 352 -2676 1928 125 17 14 chr1 56903334 56903622 -185760731 - AluSx SINE Alu -23 289 1 5823 119 54 81 chr1 56903622 56904537 -185759816 + Tigger3b DNA MER2_type 352 1230 -1 254 298 0 26 chr1 56905518 56905632 -185758721 + GA-rich Low_complexity Low_complexity 3 113 0 1889 74 0 4 chr1 56906139 56906368 -185757985 + AluSx SINE Alu 64 291 -21 2208 95 44 0 chr1 56906743 56907038 -185757315 + AluSq SINE Alu 2 309 -4 1347 101 254 0 chr1 56907155 56907383 -185756970 - AluSg SINE Alu -14 286 1 2587 62 0 0 chr1 56907401 56907708 -185756645 - AluY SINE Alu -4 307 1 196 200 25 0 chr1 56907938 56907978 -185756375 + MIR SINE MIR 85 125 -83 7786 126 42 45 chr1 56908361 56908789 -185755564 + Tigger1 DNA MER2_type 886 1314 -1104 2129 110 7 0 chr1 56908789 56909094 -185755259 + AluSx SINE Alu 1 307 0 7786 126 42 45 chr1 56909094 56909391 -185754962 + Tigger1 DNA MER2_type 1314 1611 -807 2190 103 13 7 chr1 56909391 56909691 -185754662 + AluSq SINE Alu 1 302 -11 7786 126 42 45 chr1 56909691 56910303 -185754050 + Tigger1 DNA MER2_type 1611 2221 -197 2399 81 0 3 chr1 56910303 56910601 -185753752 - AluSq SINE Alu -13 300 4 7786 126 42 45 chr1 56910601 56910776 -185753577 + Tigger1 DNA MER2_type 2221 2395 -23 649 149 0 0 chr1 56910782 56910876 -185753477 + AluJ/FLAM SINE Alu 1 94 -218 233 316 13 0 chr1 56911168 56911247 -185753106 + MIR3 SINE MIR 108 187 -21 2097 189 51 64 chr1 56911302 56911533 -185752820 + L1MB3 LINE L1 1287 1520 -4864 2146 119 3 0 chr1 56911533 56911827 -185752526 - AluSx SINE Alu -17 295 1 2097 189 51 64 chr1 56911827 56912042 -185752311 + L1MB3 LINE L1 1520 1726 -4658 2187 109 0 40 chr1 56912042 56912187 -185752166 + AluSq SINE Alu 1 150 -163 1936 142 27 0 chr1 56912187 56912482 -185751871 + AluSx SINE Alu 1 303 -9 2187 109 0 40 chr1 56912482 56912657 -185751696 + AluSq SINE Alu 150 308 -5 2097 189 51 64 chr1 56912657 56912802 -185751551 + L1MB3 LINE L1 1726 1871 -4513 9865 196 54 53 chr1 56912811 56913718 -185750635 + L1MB3 LINE L1 2053 2957 -3462 2223 116 0 0 chr1 56913718 56914021 -185750332 + AluSx SINE Alu 1 303 -9 9865 196 54 53 chr1 56914021 56914715 -185749638 + L1MB3 LINE L1 2957 3649 -2770 659 147 0 0 chr1 56914715 56914817 -185749536 + U6 snRNA snRNA 1 102 -5 2430 87 0 7 chr1 56914817 56915126 -185749227 - AluSx SINE Alu -5 307 1 9865 196 54 53 chr1 56915126 56915777 -185748576 + L1MB3 LINE L1 3649 4298 -2121 2377 112 3 35 chr1 56915777 56916125 -185748228 - MER1B DNA MER1_type 0 337 1 9865 196 54 53 chr1 56916125 56916698 -185747655 + L1MB3 LINE L1 4298 4869 -1550 1828 138 0 107 chr1 56916698 56917045 -185747308 - AluJb SINE Alu -2 310 1 9865 196 54 53 chr1 56917045 56918476 -185745877 + L1MB3 LINE L1 4869 6419 0 421 279 48 74 chr1 56918578 56918847 -185745506 - L2 LINE L2 -42 3271 3010 32211 33 63 0 chr1 56918855 56923905 -185740448 + L1PA4 LINE L1 809 6175 0 594 256 95 11 chr1 56923914 56924108 -185740245 - L2 LINE L2 -307 3006 2799 1614 279 69 2 chr1 56924110 56924586 -185739767 - L2 LINE L2 -772 2542 2035 403 316 38 33 chr1 56924548 56924801 -185739552 + MIR SINE MIR 6 262 0 * 1949 120 55 0 chr1 56925633 56925907 -185738446 - AluSx SINE Alu -21 291 3 196 284 69 86 chr1 56926182 56926298 -185738055 + MIR SINE MIR 38 151 -111 25 51 0 0 chr1 56926298 56926337 -185738016 + AT_rich Low_complexity Low_complexity 1 39 0 249 333 125 0 chr1 56927051 56927195 -185737158 - L1ME3A LINE L1 -15 6155 5994 1499 178 34 41 chr1 56927266 56927559 -185736794 - AluJo SINE Alu -13 299 9 1121 140 65 0 chr1 56927560 56927774 -185736579 - L1MD3 LINE L1 -10 7985 7758 315 122 0 0 chr1 56927907 56927956 -185736397 + (CA)n Simple_repeat Simple_repeat 2 50 0 719 169 160 52 chr1 56928704 56928917 -185735436 - MER46A DNA MER2_type 0 236 1 1676 191 7 13 chr1 56929288 56929587 -185734766 - AluJb SINE Alu -15 297 1 364 274 10 10 chr1 56929605 56929707 -185734646 + MIR SINE MIR 161 262 0 2625 40 0 0 chr1 56930462 56930760 -185733593 - AluY SINE Alu -13 298 1 491 304 77 0 chr1 56930796 56930964 -185733389 + MIR SINE MIR 76 256 -6 266 329 112 6 chr1 56931163 56931333 -185733020 - MARNA DNA Mariner -203 383 196 1894 147 10 3 chr1 56931676 56931975 -185732378 + AluSx SINE Alu 1 301 -11 1964 136 7 14 chr1 56931984 56932278 -185732075 + AluSx SINE Alu 1 292 -20 1992 132 0 31 chr1 56932819 56933138 -185731215 + AluJo SINE Alu 4 312 0 1625 175 53 17 chr1 56933700 56934060 -185730293 + L1M4 LINE L1 4808 5180 -966 500 146 62 0 chr1 56934032 56934128 -185730225 + L1M LINE L1 5327 5428 -750 * 2028 91 0 46 chr1 56934128 56934264 -185730089 + AluSx SINE Alu 1 142 -170 2187 101 0 0 chr1 56934264 56934551 -185729802 + AluSc SINE Alu 1 287 -22 294 87 0 0 chr1 56934556 56934602 -185729751 + (CATA)n Simple_repeat Simple_repeat 3 48 0 2028 91 0 46 chr1 56934602 56934744 -185729609 + AluSx SINE Alu 146 272 -40 32 0 0 0 chr1 56934934 56934966 -185729387 + AT_rich Low_complexity Low_complexity 1 32 0 1837 119 65 4 chr1 56935050 56935328 -185729025 + AluSc SINE Alu 1 295 -14 558 200 52 0 chr1 56935494 56935609 -185728744 - FLAM_A SINE Alu -12 121 1 869 220 6 0 chr1 56935628 56935805 -185728548 - L1PB4 LINE L1 -3 6153 5976 423 354 91 33 chr1 56936056 56936420 -185727933 + L2 LINE L2 2374 2758 -556 1988 88 21 97 chr1 56936472 56936801 -185727552 + AluYb8 SINE Alu 1 304 -14 233 314 119 8 chr1 56937029 56937147 -185727206 + L2 LINE L2 2709 2839 -475 218 349 47 27 chr1 56937154 56937303 -185727050 + MER5B DNA MER1_type 3 154 -24 * 268 317 42 42 chr1 56937169 56937311 -185727042 - MER5A DNA MER1_type -19 170 29 257 333 164 51 chr1 56937316 56937706 -185726647 + L2 LINE L2 2836 3269 -3 2325 94 0 3 chr1 56937822 56938120 -185726233 + AluSq SINE Alu 1 297 -16 1908 165 24 0 chr1 56938601 56938898 -185725455 + AluJb SINE Alu 1 304 -8 197 314 0 0 chr1 56939132 56939183 -185725170 - L2 LINE L2 -18 3295 3245 428 307 57 52 chr1 56939437 56939599 -185724754 + MIR3 SINE MIR 8 173 -35 1959 148 3 3 chr1 56939599 56939897 -185724456 - AluSx SINE Alu -6 306 9 428 307 57 52 chr1 56939897 56939926 -185724427 + MIR3 SINE MIR 173 200 -8 677 263 129 14 chr1 56940120 56940337 -185724016 - MIR SINE MIR -9 253 12 557 155 134 0 chr1 56940885 56940982 -185723371 - FLAM_A SINE Alu -20 122 13 1718 143 7 49 chr1 56941035 56941205 -185723148 - AluJb SINE Alu -18 294 141 2292 62 45 0 chr1 56941205 56941493 -185722860 - AluY SINE Alu -10 301 1 1718 143 7 49 chr1 56941493 56941629 -185722724 - AluJb SINE Alu -171 141 1 444 313 40 7 chr1 56942263 56942413 -185721940 + L2 LINE L2 2255 2409 -905 237 125 0 0 chr1 56942434 56942474 -185721879 + Alu SINE Alu 94 133 -170 1553 148 12 97 chr1 56942489 56942820 -185721533 + AluJb SINE Alu 1 303 -9 780 259 66 29 chr1 56943238 56943481 -185720872 - MIR SINE MIR -1 261 10 5576 54 0 1 chr1 56944093 56944795 -185719558 + L1PA8 LINE L1 5471 6171 -1 23 33 0 0 chr1 56944840 56944870 -185719483 + AT_rich Low_complexity Low_complexity 1 30 0 185 267 0 70 chr1 56945027 56945113 -185719240 - L3 LINE CR1 -1169 408 329 224 386 83 23 chr1 56945459 56945845 -185718508 + L2 LINE L2 2844 3252 -20 2014 158 0 3 chr1 56946163 56946455 -185717898 - AluJb SINE Alu -19 293 3 2199 104 3 13 chr1 56946538 56946847 -185717506 + AluSq SINE Alu 1 306 -7 457 229 229 5 chr1 56947190 56947413 -185716940 + L1ME4a LINE L1 5845 6117 -4 2542 74 3 0 chr1 56947922 56948234 -185716119 + AluSq SINE Alu 1 313 0 43 20 0 0 chr1 56949235 56949285 -185715068 + AT_rich Low_complexity Low_complexity 1 50 0 228 286 40 109 chr1 56950469 56950644 -185713709 - L2 LINE L2 -938 2376 2214 808 266 28 12 chr1 56951114 56951354 -185712999 - MIR SINE MIR -10 252 14 284 0 28 0 chr1 56953821 56953857 -185710496 + (ATG)n Simple_repeat Simple_repeat 2 38 0 1960 135 4 0 chr1 56957029 56957334 -185707019 + AluSx SINE Alu 1 306 0 212 300 67 11 chr1 56958116 56958206 -185706147 + MIR SINE MIR 88 182 -80 261 343 37 30 chr1 56958691 56958825 -185705528 + MLT1K LTR MaLR 139 273 -315 2093 150 29 0 chr1 56958874 56959221 -185705132 + MLT2D LTR ERVL 1 357 -57 210 37 0 0 chr1 56959221 56959248 -185705105 + (TC)n Simple_repeat Simple_repeat 2 28 0 309 314 19 9 chr1 56959248 56959353 -185705000 + L1MC4 LINE L1 6614 6719 -1323 202 312 149 28 chr1 56959435 56959576 -185704777 + MIR SINE MIR 91 248 -14 249 365 44 22 chr1 56959719 56959856 -185704497 - L2 LINE L2 0 3272 3133 192 232 0 54 chr1 56959954 56960010 -185704343 - L2 LINE L2 -182 3090 3038 2796 173 33 34 chr1 56960248 56960904 -185703449 + L1M4c LINE L1 1328 2077 -4307 2414 98 0 0 chr1 56960952 56961257 -185703096 + AluSx SINE Alu 1 305 -7 261 204 28 93 chr1 56961270 56961302 -185703051 + L1M4c LINE L1 2073 2106 -4278 1464 171 87 0 chr1 56961302 56961577 -185702776 - AluJo SINE Alu -13 299 1 261 204 28 93 chr1 56961577 56961652 -185702701 + L1M4c LINE L1 2106 2173 -4211 * 437 177 62 10 chr1 56961633 56961729 -185702624 + L1MB4 LINE L1 6032 6132 -48 397 98 20 108 chr1 56961788 56961890 -185702463 + L1MB4 LINE L1 6088 6180 0 2390 98 0 0 chr1 56962051 56962358 -185701995 - AluSx SINE Alu -5 307 1 2168 124 3 0 chr1 56962694 56962992 -185701361 + AluSx SINE Alu 1 299 -13 1555 166 31 42 chr1 56963082 56963371 -185700982 + AluJb SINE Alu 2 287 -25 474 18 0 0 chr1 56963381 56963436 -185700917 + (CA)n Simple_repeat Simple_repeat 2 56 0 236 188 0 0 chr1 56963480 56963528 -185700825 - L2 LINE L2 -1 3312 3265 2209 115 0 3 chr1 56963850 56964154 -185700199 - AluSx SINE Alu -9 303 1 326 246 146 31 chr1 56964258 56964388 -185699965 + MIR SINE MIR 118 262 0 510 17 0 0 chr1 56964706 56964765 -185699588 + (TATG)n Simple_repeat Simple_repeat 2 60 0 602 154 19 0 chr1 56964775 56964879 -185699474 - FLAM_C SINE Alu -37 106 1 903 149 44 14 chr1 56964882 56965126 -185699227 - MER33 DNA MER1_type -38 286 1 435 228 376 0 chr1 56965715 56965904 -185698449 - MIR SINE MIR -1 261 2 229 330 39 19 chr1 56966036 56966139 -185698214 + MIR SINE MIR 124 228 -34 2986 149 7 57 chr1 56966573 56967083 -185697270 + L1MB3 LINE L1 5609 6086 -97 2276 107 0 0 chr1 56967083 56967383 -185696970 - AluSq SINE Alu -13 300 1 2986 149 7 57 chr1 56967383 56967470 -185696883 + L1MB3 LINE L1 6086 6176 -7 2156 119 3 22 chr1 56967587 56967905 -185696448 - AluSx SINE Alu 0 312 1 261 374 84 62 chr1 56968053 56968470 -185695883 - L2 LINE L2 -2 3270 2845 183 281 178 35 chr1 56968564 56968795 -185695558 - L2 LINE L2 -458 2856 2593 267 277 43 53 chr1 56969047 56969141 -185695212 - L2 LINE L2 -213 3059 2967 288 324 205 5 chr1 56969181 56969366 -185694987 - L2 LINE L2 -836 2478 2257 1974 131 38 3 chr1 56969904 56970194 -185694159 - AluSx SINE Alu -12 300 1 24 0 0 0 chr1 56970332 56970356 -185693997 + AT_rich Low_complexity Low_complexity 1 24 0 210 337 67 11 chr1 56971186 56971275 -185693078 + MIR3 SINE MIR 2 95 -113 635 323 78 15 chr1 56971394 56971725 -185692628 + MLT1K LTR MaLR 230 581 -7 223 314 50 50 chr1 56971808 56971948 -185692405 + MIR SINE MIR 97 236 -26 394 310 81 36 chr1 56972111 56972313 -185692040 + MIR SINE MIR 19 225 -37 472 269 60 30 chr1 56972400 56972567 -185691786 + MER104 DNA Tc2 6 177 -3 357 24 0 0 chr1 56972689 56972731 -185691622 + (TG)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chr1 56972995 56973026 -185691327 + AT_rich Low_complexity Low_complexity 1 31 0 325 224 99 112 chr1 56974069 56974230 -185690123 - MIR SINE MIR -48 214 56 23 0 0 0 chr1 56975940 56975963 -185688390 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr1 56976045 56976072 -185688281 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1700 143 32 29 chr1 56976074 56976353 -185688000 - AluJo SINE Alu -30 282 3 530 314 39 6 chr1 56978162 56978318 -185686035 + MIR SINE MIR 54 214 -48 2337 99 0 3 chr1 56978858 56979161 -185685192 - AluSq SINE Alu -10 303 2 228 321 0 0 chr1 56980666 56980722 -185683631 + polypurine Low_complexity Low_complexity 1 56 0 843 193 109 38 chr1 56980855 56981120 -185683233 + L1MC4a LINE L1 5260 5543 -2265 841 186 42 65 chr1 56981133 56981388 -185682965 + MER34B LTR ERV1 10 249 -316 4284 103 38 0 chr1 56981385 56981995 -185682358 + L1PA15 LINE L1 5527 6159 -6 1474 156 82 4 chr1 56982039 56982309 -185682044 - LTR8A LTR ERV1 -53 674 384 279 232 12 37 chr1 56982373 56982455 -185681898 - MER90 LTR ERV1 -495 80 1 1316 129 40 0 chr1 56982663 56982865 -185681488 - MSTB LTR MaLR -4 422 213 885 115 109 0 chr1 56982879 56983035 -185681318 + MER34B LTR ERV1 391 563 -2 650 244 180 19 chr1 56983042 56983321 -185681032 + L1MC4a LINE L1 5547 5819 -302 314 170 71 22 chr1 56983331 56983423 -185680930 + L1MA10 LINE L1 6044 6298 -27 299 259 137 67 chr1 56983437 56983614 -185680739 + L1MC4a LINE L1 5796 5959 -1849 2338 112 0 6 chr1 56983614 56983928 -185680425 + AluSx SINE Alu 1 312 0 299 259 137 67 chr1 56983928 56984094 -185680259 + L1MC4a LINE L1 5959 6163 -1645 1380 192 48 14 chr1 56984300 56984592 -185679761 - AluSq SINE Alu -11 302 1 196 87 0 43 chr1 56984664 56984710 -185679643 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1308 194 0 4 chr1 56984710 56984937 -185679416 - AluJb SINE Alu -32 280 55 397 321 23 0 chr1 56985002 56985133 -185679220 - MIR SINE MIR -109 153 20 915 199 62 6 chr1 56985221 56985397 -185678956 - MER5A DNA MER1_type 0 189 4 23 0 0 0 chr1 56985718 56985741 -185678612 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 56986056 56986088 -185678265 + AT_rich Low_complexity Low_complexity 1 32 0 252 196 20 0 chr1 56986200 56986251 -185678102 - MER5A DNA MER1_type 0 189 138 1527 132 0 0 chr1 56986274 56986487 -185677866 + AluSg/x SINE Alu 98 310 0 2861 171 76 3 chr1 56986771 56987339 -185677014 + L1MD3 LINE L1 7381 7989 -6 2027 131 34 0 chr1 56987719 56988017 -185676336 + AluSx SINE Alu 5 312 0 2474 60 0 19 chr1 56989411 56989727 -185674626 + AluY SINE Alu 1 310 -1 1952 118 54 83 chr1 56989843 56990215 -185674138 - MER46B DNA MER2_type 0 236 1 32 57 0 0 chr1 56990676 56990729 -185673624 + AT_rich Low_complexity Low_complexity 1 53 0 2025 139 0 0 chr1 56990861 56991156 -185673197 + AluSx SINE Alu 1 295 -17 2133 106 3 0 chr1 56991621 56991935 -185672418 + AluSx SINE Alu 1 315 0 457 337 127 26 chr1 56991948 56992482 -185671871 + L1M4 LINE L1 2647 3234 -2912 2190 133 0 0 chr1 56993078 56993379 -185670974 + AluSx SINE Alu 1 301 -11 1815 145 6 35 chr1 56993637 56993954 -185670399 + AluJo SINE Alu 1 308 -4 256 333 9 36 chr1 56994005 56994116 -185670237 - L2 LINE L2 -520 2794 2687 595 256 101 29 chr1 56994254 56994461 -185669892 - MIR SINE MIR -1 261 40 2310 104 3 3 chr1 56994487 56994795 -185669558 + AluSp SINE Alu 1 308 -5 741 191 6 12 chr1 56995083 56995245 -185669108 + L1MB3 LINE L1 6022 6182 -1 2367 82 10 3 chr1 56995277 56995582 -185668771 - AluSg SINE Alu -3 307 1 448 242 117 0 chr1 56996479 56996599 -185667754 - MIR3 SINE MIR -6 202 69 30 0 0 24 chr1 56996636 56996648 -185667705 + AT_rich Low_complexity Low_complexity 1 12 -28 2323 73 0 7 chr1 56996648 56996935 -185667418 - AluSg SINE Alu -14 296 12 30 0 0 24 chr1 56996935 56996963 -185667390 + AT_rich Low_complexity Low_complexity 12 40 0 264 29 0 0 chr1 56997901 56997935 -185666418 + MER7A DNA MER2_type 67 98 -248 1583 97 5 0 chr1 56997937 56998144 -185666209 - AluSg/x SINE Alu -9 301 94 603 175 26 26 chr1 56998316 56998430 -185665923 + FRAM SINE Alu 54 167 -9 200 304 36 0 chr1 56998807 56998863 -185665490 - L2 LINE L2 -27 3245 3188 347 336 91 9 chr1 56998986 56999206 -185665147 + L2 LINE L2 1743 1980 -1334 * 411 238 39 88 chr1 56999198 56999333 -185665020 + MIR SINE MIR 76 216 -46 2326 90 3 0 chr1 56999333 56999622 -185664731 + AluSp SINE Alu 1 290 -23 411 238 39 88 chr1 56999622 56999635 -185664718 + MIR SINE MIR 216 228 -34 1597 166 33 4 chr1 56999635 56999906 -185664447 + AluJo SINE Alu 27 305 -7 411 238 39 88 chr1 56999906 56999937 -185664416 + MIR SINE MIR 228 247 -15 439 252 6 57 chr1 57000049 57000208 -185664145 - L2 LINE L2 0 3313 3163 645 228 0 49 chr1 57000223 57000309 -185664044 + L1ME1 LINE L1 6007 6083 -83 2144 151 0 0 chr1 57000309 57000621 -185663732 - AluJo SINE Alu 0 312 1 645 228 0 49 chr1 57000621 57000696 -185663657 + L1ME1 LINE L1 6083 6160 -6 1857 285 40 42 chr1 57000722 57000984 -185663369 - L2 LINE L2 -209 3104 2843 2269 106 0 3 chr1 57000984 57001286 -185663067 + AluSg SINE Alu 1 301 -9 1857 285 40 42 chr1 57001286 57001571 -185662782 - L2 LINE L2 -470 2843 2559 2678 48 0 0 chr1 57001571 57001882 -185662471 + AluY SINE Alu 1 311 0 1857 285 40 42 chr1 57001882 57001988 -185662365 - L2 LINE L2 -754 2559 2454 1720 158 0 70 chr1 57001988 57002149 -185662204 - AluJo SINE Alu -18 294 164 2590 57 0 0 chr1 57002149 57002450 -185661903 - AluY SINE Alu -10 301 1 1720 158 0 70 chr1 57002450 57002604 -185661749 - AluJo SINE Alu -148 164 1 1857 285 40 42 chr1 57002604 57002749 -185661604 - L2 LINE L2 -859 2454 2316 1792 120 58 0 chr1 57002758 57003017 -185661336 + AluSx SINE Alu 2 275 -37 207 179 26 0 chr1 57003017 57003056 -185661297 + GA-rich Low_complexity Low_complexity 1 40 0 2621 46 0 3 chr1 57003341 57003647 -185660706 - AluY SINE Alu -6 305 1 201 338 0 0 chr1 57004411 57004479 -185659874 + GA-rich Low_complexity Low_complexity 2 69 0 266 316 125 56 chr1 57004479 57004938 -185659415 + L2 LINE L2 2614 3112 -160 206 351 99 18 chr1 57005000 57005111 -185659242 - MIR SINE MIR -73 135 16 351 0 0 0 chr1 57005137 57005176 -185659177 + (CA)n Simple_repeat Simple_repeat 1 39 0 243 235 20 0 chr1 57005282 57005333 -185659020 + L3 LINE CR1 1519 1570 -7 1976 114 76 0 chr1 57005347 57005469 -185658884 + AluSx SINE Alu 1 112 -200 212 0 36 0 chr1 57005469 57005497 -185658856 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1976 114 76 0 chr1 57005497 57005664 -185658689 + AluSx SINE Alu 112 312 0 496 324 46 34 chr1 57005766 57006004 -185658349 - MIR SINE MIR -6 256 16 333 153 0 0 chr1 57006564 57006636 -185657717 + (TCCA)n Simple_repeat Simple_repeat 1 72 0 331 212 171 6 chr1 57006678 57006848 -185657505 - L2 LINE L2 -159 3113 2916 226 267 89 22 chr1 57006847 57006937 -185657416 - MIR SINE MIR -59 203 108 * 623 277 87 5 chr1 57006946 57007152 -185657201 - MIR SINE MIR -7 255 33 2177 125 0 7 chr1 57007207 57007512 -185656841 + AluSx SINE Alu 1 303 -9 1963 137 3 7 chr1 57007512 57007812 -185656541 + AluSg SINE Alu 1 299 -11 1816 78 0 0 chr1 57007812 57008029 -185656324 + AluSg/x SINE Alu 80 297 -13 840 257 193 22 chr1 57008029 57008543 -185655810 - L2 LINE L2 -9 3304 2677 213 175 0 0 chr1 57008636 57008676 -185655677 + (TG)n Simple_repeat Simple_repeat 1 40 0 2182 101 0 35 chr1 57009086 57009404 -185654949 - AluSx SINE Alu -5 307 1 3485 143 23 2 chr1 57009565 57010096 -185654257 + MER34 LTR ERV1 1 542 0 1877 159 7 13 chr1 57010410 57010719 -185653634 - AluJo SINE Alu -3 309 3 233 245 61 0 chr1 57010748 57010797 -185653556 - MIR SINE MIR -179 83 32 2444 146 10 20 chr1 57010803 57011206 -185653147 + MSTB LTR MaLR 1 399 -27 745 91 55 0 chr1 57011206 57011316 -185653037 - AluSg/x SINE Alu 0 309 194 1242 67 0 0 chr1 57011317 57011467 -185652886 - AluY SINE Alu -161 150 1 335 128 0 0 chr1 57011467 57011514 -185652839 + MSTB LTR MaLR 382 428 0 574 270 85 33 chr1 57011591 57011802 -185652551 - MIR SINE MIR -28 234 13 199 330 275 0 chr1 57011929 57012038 -185652315 + L2 LINE L2 3134 3272 0 730 262 16 16 chr1 57012371 57012554 -185651799 - MIR3 SINE MIR -2 206 24 337 252 87 106 chr1 57012558 57012776 -185651577 - L2 LINE L2 0 3313 3100 589 129 0 0 chr1 57012950 57013035 -185651318 - AluSg/x SINE Alu -12 298 214 291 226 168 44 chr1 57013046 57013183 -185651170 + MIR SINE MIR 103 256 -6 1486 114 31 35 chr1 57013542 57013802 -185650551 + AluJb SINE Alu 70 312 0 189 321 111 12 chr1 57014017 57014098 -185650255 + MIR SINE MIR 58 146 -62 227 122 0 24 chr1 57014129 57014170 -185650183 + L2 LINE L2 3268 3307 -6 369 309 8 40 chr1 57014381 57014507 -185649846 - L2 LINE L2 -15 3257 3136 475 203 45 45 chr1 57014551 57014684 -185649669 - L1ME4a LINE L1 -17 6104 5972 558 0 0 0 chr1 57014686 57014748 -185649605 + (TA)n Simple_repeat Simple_repeat 1 62 0 1398 165 105 23 chr1 57014750 57015016 -185649337 - AluJb SINE Alu -24 288 1 1398 181 0 0 chr1 57015016 57015243 -185649110 - L1MC3 LINE L1 -370 7415 7189 364 267 0 0 chr1 57015245 57015335 -185649018 - MLT1F1 LTR MaLR -442 125 36 707 114 35 0 chr1 57015336 57015450 -185648903 - L1MC3 LINE L1 -688 7097 6980 950 156 71 0 chr1 57015457 57015611 -185648742 - AluJo SINE Alu -21 291 127 1415 122 48 0 chr1 57015611 57015841 -185648512 - L1MC3 LINE L1 -840 6945 6705 2260 111 0 7 chr1 57016124 57016422 -185647931 - AluSx SINE Alu -16 296 1 309 293 117 42 chr1 57016503 57016594 -185647759 - L2 LINE L2 -72 3241 3158 2003 129 3 20 chr1 57016594 57016896 -185647457 + AluJb SINE Alu 1 297 -15 309 293 117 42 chr1 57016896 57017043 -185647310 - L2 LINE L2 -155 3158 2985 556 316 74 0 chr1 57017094 57017284 -185647069 - MIR SINE MIR -6 256 53 189 74 0 0 chr1 57017639 57017666 -185646687 + (CA)n Simple_repeat Simple_repeat 1 27 0 829 199 0 0 chr1 57017815 57017946 -185646407 - FLAM_A SINE Alu -1 132 2 483 270 18 0 chr1 57018094 57018205 -185646148 + MIR3 SINE MIR 44 156 -52 2088 97 3 24 chr1 57018220 57018551 -185645802 + AluSq SINE Alu 1 325 0 359 260 20 73 chr1 57018627 57018777 -185645576 + MIR3 SINE MIR 66 207 -1 1073 147 6 18 chr1 57018820 57018983 -185645370 + FRAM SINE Alu 1 161 -5 526 274 134 0 chr1 57019064 57019250 -185645103 + MIR SINE MIR 47 257 -5 2327 103 0 0 chr1 57019288 57019590 -185644763 + AluSg SINE Alu 1 302 -8 27 29 0 0 chr1 57019642 57019676 -185644677 + AT_rich Low_complexity Low_complexity 1 34 0 2081 129 0 3 chr1 57019683 57019999 -185644354 + AluSx SINE Alu 1 315 0 233 175 12 75 chr1 57020068 57020148 -185644205 - L1ME4a LINE L1 -121 6000 5926 747 249 26 48 chr1 57020204 57020473 -185643880 - L1ME4a LINE L1 -325 5796 5534 215 321 186 30 chr1 57020629 57020866 -185643487 + L2 LINE L2 557 830 -2484 1033 98 8 0 chr1 57020887 57021020 -185643333 + AluSq/x SINE Alu 12 145 -168 2170 124 3 0 chr1 57071679 57071978 -185592375 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 57074058 57074080 -185590273 + AT_rich Low_complexity Low_complexity 1 22 0 708 134 9 0 chr1 57075072 57075207 -185589146 + L1M2 LINE L1 1 502 -6707 1819 163 3 3 chr1 57075857 57076140 -185588213 + AluJo SINE Alu 6 288 -24 2129 110 3 16 chr1 57076224 57076533 -185587820 - AluSp SINE Alu -8 305 1 2717 176 31 0 chr1 57076562 57077085 -185587268 - L1MB5 LINE L1 -7 6167 5629 540 219 77 61 chr1 57077158 57077405 -185586948 + MER112 DNA MER1_type 3 253 -3 443 387 6 0 chr1 57077479 57077647 -185586706 + MIR SINE MIR 21 189 -73 478 187 187 66 chr1 57077975 57078042 -185586311 + MER5A DNA MER1_type 3 61 -128 2072 128 3 28 chr1 57078042 57078363 -185585990 + AluSq SINE Alu 1 313 0 478 187 187 66 chr1 57078363 57078461 -185585892 + MER5A DNA MER1_type 61 188 -1 238 86 0 0 chr1 57079001 57079036 -185585317 - L1MA9 LINE L1 0 6312 6278 406 306 50 73 chr1 57079106 57079367 -185584986 - MIR SINE MIR 0 262 8 956 189 24 29 chr1 57079689 57079895 -185584458 - MER20 DNA MER1_type -5 214 10 28 48 0 0 chr1 57080019 57080061 -185584292 + AT_rich Low_complexity Low_complexity 1 42 0 1619 179 54 0 chr1 57080688 57080968 -185583385 + AluJb SINE Alu 1 295 -17 1197 136 0 0 chr1 57081243 57081412 -185582941 + AluSg/x SINE Alu 135 303 -7 737 164 22 22 chr1 57081426 57081560 -185582793 + AluJo SINE Alu 3 136 -176 33 0 0 0 chr1 57081597 57081630 -185582723 + AT_rich Low_complexity Low_complexity 1 33 0 311 286 7 86 chr1 57081724 57081864 -185582489 - MIR3 SINE MIR -12 196 68 205 263 0 0 chr1 57081978 57082016 -185582337 + L2 LINE L2 3242 3279 -34 259 150 50 138 chr1 57082174 57082254 -185582099 + LTR64 LTR ERVK 1 73 -485 1521 178 159 23 chr1 57082254 57082311 -185582042 + LTR64 LTR ERVK 48 96 -462 207 0 0 0 chr1 57082311 57082334 -185582019 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1521 178 159 23 chr1 57082334 57082703 -185581650 + LTR64 LTR ERVK 96 532 -26 24 0 0 0 chr1 57082714 57082738 -185581615 + AT_rich Low_complexity Low_complexity 1 24 0 1751 153 10 42 chr1 57082793 57083101 -185581252 + AluJo SINE Alu 14 311 -1 207 0 0 0 chr1 57083364 57083387 -185580966 + (T)n Simple_repeat Simple_repeat 1 23 0 598 243 56 93 chr1 57083879 57084147 -185580206 - MIR SINE MIR -1 261 4 669 201 24 139 chr1 57084203 57084491 -185579862 - MER112 DNA MER1_type -1 255 1 1831 213 48 70 chr1 57085411 57085979 -185578374 - L1MC4 LINE L1 -1030 7012 6458 2537 182 67 34 chr1 57086265 57086855 -185577498 - L1MC4a LINE L1 -139 7669 7060 2292 102 0 0 chr1 57086855 57087150 -185577203 - AluSq SINE Alu -18 295 1 2537 182 67 34 chr1 57087150 57087287 -185577066 - L1MC4a LINE L1 -748 7060 6929 1155 181 103 29 chr1 57087291 57087556 -185576797 - L1MC4a LINE L1 -1214 6594 6305 16829 32 8 3 chr1 57087556 57090396 -185573957 - L1PA4 LINE L1 0 6155 3307 1155 181 103 29 chr1 57090396 57090411 -185573942 - L1MC4a LINE L1 -1503 6305 6293 1432 211 57 14 chr1 57090413 57090763 -185573590 - MLT1A1 LTR MaLR 0 365 1 873 230 98 54 chr1 57090775 57091098 -185573255 - L1MC4a LINE L1 -1651 6157 5850 530 209 127 0 chr1 57091098 57091208 -185573145 - FLAM_A SINE Alu -9 124 1 873 230 98 54 chr1 57091208 57091287 -185573066 - L1MC4a LINE L1 -1958 5850 5776 216 0 0 0 chr1 57091287 57091311 -185573042 + (TA)n Simple_repeat Simple_repeat 2 25 0 2526 67 3 6 chr1 57091311 57091625 -185572728 - AluSp SINE Alu 0 313 1 873 230 98 54 chr1 57091625 57091699 -185572654 - L1MC4a LINE L1 -2031 5777 5658 439 279 82 13 chr1 57091885 57092118 -185572235 - L1MDa LINE L1 -2401 3814 3566 249 214 0 0 chr1 57092127 57092183 -185572170 + MER116 DNA Mariner 25 80 0 568 247 60 72 chr1 57092312 57092782 -185571571 - L1MDa LINE L1 -2828 3387 2924 183 80 0 0 chr1 57094159 57094184 -185570169 + (T)n Simple_repeat Simple_repeat 1 25 0 625 298 26 11 chr1 57094184 57094456 -185569897 - L1MDa LINE L1 -3316 2899 2624 665 292 103 29 chr1 57094478 57094869 -185569484 - L1MDa LINE L1 -3934 2283 1863 657 274 92 42 chr1 57096355 57096955 -185567398 - L1MDa LINE L1 -4564 1651 1082 5477 74 34 51 chr1 57096955 57098316 -185566037 - SVA Other Other -518 1047 38 279 0 0 0 chr1 57098321 57098352 -185566001 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 657 274 92 42 chr1 57098352 57098536 -185565817 - L1MDa LINE L1 -5136 1079 1008 252 273 27 45 chr1 57098771 57098881 -185565472 - L1MDa LINE L1 -5488 717 610 2245 102 0 0 chr1 57099034 57099360 -185564993 - AluSx SINE Alu 0 312 1 379 153 56 0 chr1 57099380 57099452 -185564901 - L1MC1 LINE L1 -21 6312 6237 274 211 0 14 chr1 57099612 57099683 -185564670 - L1MDa LINE L1 -5961 244 175 302 335 83 22 chr1 57100493 57100723 -185563630 - MLT1K LTR MaLR -145 443 200 282 341 8 31 chr1 57101074 57101203 -185563150 + L3 LINE CR1 1418 1543 -34 405 214 0 62 chr1 57101331 57101479 -185562874 - AluSg/x SINE Alu 0 315 175 693 218 36 131 chr1 57102193 57102468 -185561885 + MIR SINE MIR 14 262 0 279 195 39 39 chr1 57102476 57102553 -185561800 + L2 LINE L2 3196 3272 0 1679 159 54 4 chr1 57102900 57103177 -185561176 - AluJb SINE Alu -21 291 1 200 274 126 37 chr1 57103204 57103339 -185561014 + L2 LINE L2 772 918 -2396 5726 90 41 22 chr1 57103472 57104406 -185559947 + L1MA3 LINE L1 5355 6305 0 2195 117 7 3 chr1 57106225 57106533 -185557820 - AluSg SINE Alu -1 309 1 2133 144 0 3 chr1 57106703 57107009 -185557344 - AluSx SINE Alu -7 305 1 22 35 0 0 chr1 57107037 57107066 -185557287 + AT_rich Low_complexity Low_complexity 1 29 0 351 305 42 8 chr1 57107819 57107937 -185556416 - L2 LINE L2 -2 3311 3190 706 172 26 0 chr1 57107953 57108069 -185556284 + FLAM_C SINE Alu 2 120 -13 420 20 0 0 chr1 57108069 57108118 -185556235 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 362 273 0 34 chr1 57108434 57108522 -185555831 - L2 LINE L2 -1 3271 3187 195 42 0 0 chr1 57108880 57108904 -185555449 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3263 115 18 0 chr1 57108904 57109400 -185554953 - L1MC1 LINE L1 -13 6320 5816 221 152 43 22 chr1 57109400 57109446 -185554907 + CT-rich Low_complexity Low_complexity 4 50 0 971 136 0 26 chr1 57109447 57109602 -185554751 - FRAM SINE Alu -6 170 20 1196 156 40 4 chr1 57109607 57109832 -185554521 - L1MC1 LINE L1 -513 5820 5588 * 4155 130 124 138 chr1 57109824 57109845 -185554508 - L1MCa LINE L1 -4794 1632 1612 1893 153 10 10 chr1 57109845 57110153 -185554200 - AluSx SINE Alu -1 311 4 4155 130 124 138 chr1 57110153 57110190 -185554163 - L1MCa LINE L1 -4814 1612 1576 2288 95 0 7 chr1 57110190 57110494 -185553859 - AluSg SINE Alu -8 302 1 4155 130 124 138 chr1 57110494 57111825 -185552528 - L1MCa LINE L1 -4850 1576 262 1433 115 35 0 chr1 57111825 57112051 -185552302 - Tigger2 DNA MER2_type -48 2670 2437 1173 190 8 4 chr1 57112059 57112296 -185552057 - L1MCa LINE L1 -6170 256 19 198 0 0 0 chr1 57113042 57113064 -185551289 + (T)n Simple_repeat Simple_repeat 1 22 0 314 360 36 9 chr1 57113303 57113414 -185550939 - L2 LINE L2 -25 3247 3134 499 247 109 6 chr1 57113433 57113607 -185550746 + L1ME2 LINE L1 5961 6152 -12 610 163 49 65 chr1 57113633 57113756 -185550597 + FLAM_A SINE Alu 3 123 -10 673 331 85 59 chr1 57113876 57114563 -185549790 - L2 LINE L2 -267 3005 2301 344 110 4 25 chr1 57114644 57114735 -185549618 - Alu SINE Alu -244 56 1 1511 162 3 57 chr1 57117065 57117387 -185546966 + AluJo SINE Alu 1 306 0 2222 64 3 70 chr1 57117390 57117720 -185546633 + AluSx SINE Alu 4 311 -1 267 370 60 16 chr1 57118462 57118646 -185545707 + L2 LINE L2 2468 2659 -655 398 316 49 102 chr1 57118807 57119218 -185545135 + L2 LINE L2 2869 3257 -15 2148 116 3 0 chr1 57119404 57119705 -185544648 + AluSx SINE Alu 1 302 -10 230 211 19 0 chr1 57119974 57120026 -185544327 + L2 LINE L2 3261 3313 0 22 35 0 0 chr1 57120392 57120421 -185543932 + AT_rich Low_complexity Low_complexity 1 29 0 341 322 12 64 chr1 57120506 57120677 -185543676 - MIR3 SINE MIR -10 198 37 605 282 66 26 chr1 57120904 57121131 -185543222 + LTR33 LTR ERVL 5 240 -281 259 238 163 62 chr1 57121178 57121338 -185543015 + LTR33 LTR ERVL 335 510 -11 240 375 83 36 chr1 57121448 57121616 -185542737 + L2 LINE L2 3078 3253 -19 305 284 110 0 chr1 57121998 57122107 -185542246 - L2 LINE L2 -1 3312 3192 27 49 0 0 chr1 57123291 57123332 -185541021 + AT_rich Low_complexity Low_complexity 1 41 0 342 0 0 0 chr1 57123456 57123494 -185540859 + (TG)n Simple_repeat Simple_repeat 2 39 0 573 217 39 8 chr1 57123798 57123927 -185540426 + MER94 DNA DNA 2 134 0 182 204 245 0 chr1 57124738 57124787 -185539566 - L2 LINE L2 -19 3253 3193 485 222 139 46 chr1 57124836 57125030 -185539323 - MIR SINE MIR -41 221 10 203 333 75 0 chr1 57125192 57125285 -185539068 + MIR SINE MIR 130 229 -33 201 368 86 26 chr1 57125887 57126121 -185538232 - L3 LINE CR1 -1216 361 114 478 173 0 36 chr1 57127275 57127414 -185536939 + CT-rich Low_complexity Low_complexity 4 137 0 262 286 0 14 chr1 57127414 57127484 -185536869 + C-rich Low_complexity Low_complexity 6 74 0 261 275 30 84 chr1 57127991 57128122 -185536231 - L2 LINE L2 -10 3262 3139 1679 139 9 77 chr1 57128342 57128666 -185535687 + AluJo SINE Alu 1 302 -10 449 306 52 15 chr1 57128761 57128895 -185535458 + L3 LINE CR1 1405 1543 -34 21 0 0 0 chr1 57131558 57131579 -185532774 + AT_rich Low_complexity Low_complexity 1 21 0 2064 90 73 10 chr1 57131864 57132152 -185532201 - AluSg SINE Alu -4 306 1 2204 117 17 0 chr1 57132877 57133177 -185531176 - AluSx SINE Alu -7 305 1 216 0 0 0 chr1 57133464 57133488 -185530865 + (T)n Simple_repeat Simple_repeat 1 24 0 2422 87 0 0 chr1 57133689 57133999 -185530354 - AluY SINE Alu -1 310 1 26 39 0 20 chr1 57134593 57134615 -185529738 + AT_rich Low_complexity Low_complexity 1 22 -28 603 147 44 88 chr1 57134615 57134714 -185529639 - FLAM_C SINE Alu -171 131 38 2336 88 3 0 chr1 57134714 57135009 -185529344 + AluSp SINE Alu 1 296 -17 603 147 44 88 chr1 57135009 57135045 -185529308 - FLAM_C SINE Alu -264 38 2 26 39 0 20 chr1 57135045 57135073 -185529280 + AT_rich Low_complexity Low_complexity 22 50 0 1762 179 20 20 chr1 57135224 57135521 -185528832 - AluJo SINE Alu -15 297 1 1131 145 12 0 chr1 57135631 57135803 -185528550 + FAM SINE Alu 1 174 -1 1789 104 97 4 chr1 57137005 57137273 -185527080 - AluSg SINE Alu -17 293 1 946 278 112 59 chr1 57137962 57138451 -185525902 + L2 LINE L2 2700 3246 -67 1459 177 52 96 chr1 57138451 57138858 -185525495 - MLT1B LTR MaLR 0 390 2 946 278 112 59 chr1 57138858 57138930 -185525423 + L2 LINE L2 3246 3313 0 552 253 149 23 chr1 57139120 57139341 -185525012 + MIR SINE MIR 9 257 -5 256 236 0 0 chr1 57139402 57139457 -185524896 + L1MC/D LINE L1 5522 5576 -757 543 218 59 41 chr1 57139709 57139879 -185524474 - MER5B DNA MER1_type -3 175 3 728 161 54 5 chr1 57140506 57140692 -185523661 - Charlie5 DNA MER1_type -27 2585 2391 1724 166 0 22 chr1 57140723 57141001 -185523352 - AluJo SINE Alu -24 288 17 423 100 0 0 chr1 57141039 57141099 -185523254 + MLT1B LTR MaLR 331 390 0 500 216 0 0 chr1 57141182 57141297 -185523056 - L1MB7 LINE L1 -58 6116 6002 2350 168 0 19 chr1 57141312 57141735 -185522618 + MER47B DNA MER2_type 2 416 -2 818 176 13 14 chr1 57141740 57141924 -185522429 - L1MB7 LINE L1 -178 6006 5845 572 257 46 13 chr1 57143629 57143781 -185520572 + MIR SINE MIR 26 182 -80 1317 184 167 14 chr1 57144070 57144500 -185519853 - LTR54B LTR ERV1 -2 496 1 277 258 56 5 chr1 57144831 57144952 -185519401 - MIR3 SINE MIR -5 203 74 1644 180 19 6 chr1 57145835 57146152 -185518201 - MER2 DNA MER2_type -24 321 1 1565 158 70 30 chr1 57148075 57148373 -185515980 - AluJb SINE Alu 0 312 3 26 0 0 0 chr1 57148373 57148399 -185515954 + AT_rich Low_complexity Low_complexity 1 26 0 2151 123 0 16 chr1 57148899 57149216 -185515137 - AluSx SINE Alu 0 312 1 1699 171 10 20 chr1 57150491 57150795 -185513558 - AluJo SINE Alu -11 301 1 234 300 170 0 chr1 57152311 57152411 -185511942 - L2 LINE L2 -22 3250 3134 465 167 0 22 chr1 57152439 57152519 -185511834 - MLT1A1 LTR MaLR 0 365 288 427 227 68 49 chr1 57152519 57152682 -185511671 - LTR45B LTR ERV1 0 489 324 2119 112 6 38 chr1 57152699 57153012 -185511341 + AluSg SINE Alu 1 303 -7 1966 156 3 3 chr1 57153022 57153323 -185511030 + AluJb SINE Alu 1 301 -11 2600 40 13 0 chr1 57153847 57154151 -185510202 - AluY SINE Alu -3 308 1 2025 99 59 0 chr1 57154151 57154424 -185509929 - AluSq SINE Alu -24 289 1 246 217 87 14 chr1 57155011 57155080 -185509273 + Charlie8 DNA MER1_type 2344 2417 0 341 271 82 0 chr1 57155294 57155379 -185508974 + MIR SINE MIR 20 111 -151 1987 136 3 20 chr1 57155889 57156048 -185508305 - AluJb SINE Alu -22 290 137 2117 128 0 23 chr1 57156048 57156353 -185508000 - AluSx SINE Alu -14 298 1 1987 136 3 20 chr1 57156353 57156488 -185507865 - AluJb SINE Alu -175 137 1 1781 174 16 0 chr1 57156735 57157052 -185507301 + L1MC1 LINE L1 6006 6327 -6 757 185 33 7 chr1 57157260 57157411 -185506942 + AluJo SINE Alu 3 157 -155 1961 127 3 14 chr1 57158141 57158445 -185505908 + AluSx SINE Alu 1 301 0 307 344 31 46 chr1 57158864 57159059 -185505294 + MIR SINE MIR 15 206 -56 514 123 0 0 chr1 57159072 57159145 -185505208 - AluSc SINE Alu -87 222 150 391 305 81 29 chr1 57159301 57159475 -185504878 - MIR SINE MIR -71 191 9 351 0 0 0 chr1 57159852 57159891 -185504462 + (TTG)n Simple_repeat Simple_repeat 2 40 0 506 261 124 17 chr1 57159904 57160145 -185504208 - MLT1L LTR MaLR -348 267 1 22 56 0 0 chr1 57160224 57160260 -185504093 + AT_rich Low_complexity Low_complexity 1 36 0 202 287 87 87 chr1 57160492 57160642 -185503711 - MIR SINE MIR -66 196 47 27 0 0 0 chr1 57160775 57160802 -185503551 + AT_rich Low_complexity Low_complexity 1 27 0 226 231 39 0 chr1 57160834 57160912 -185503441 - L1M4 LINE L1 -801 5345 5265 2077 131 0 0 chr1 57161514 57161821 -185502532 - AluSx SINE Alu 0 307 1 186 150 0 0 chr1 57162654 57162694 -185501659 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 253 296 174 0 chr1 57163166 57163264 -185501089 - L2 LINE L2 -9 3263 3149 22 0 0 0 chr1 57163280 57163302 -185501051 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 57163534 57163555 -185500798 + AT_rich Low_complexity Low_complexity 1 21 0 1662 178 17 27 chr1 57163781 57164079 -185500274 + AluJo SINE Alu 1 295 -17 1569 245 80 29 chr1 57164080 57164920 -185499433 + L1MEc LINE L1 2093 2946 -3269 489 243 21 74 chr1 57164929 57165118 -185499235 + L1ME2 LINE L1 5949 6127 -37 * 4092 113 22 51 chr1 57165112 57165706 -185498647 + L1PB1 LINE L1 4788 5361 -790 2488 63 0 3 chr1 57165706 57166008 -185498345 + AluY SINE Alu 1 301 -10 4092 113 22 51 chr1 57166008 57166539 -185497814 + L1PB1 LINE L1 5361 5905 -246 1185 84 7 0 chr1 57166539 57166682 -185497671 + AluSg/x SINE Alu 143 289 -20 1425 82 0 10 chr1 57166682 57166877 -185497476 + L1PB1 LINE L1 5959 6151 0 1185 84 7 0 chr1 57166877 57166888 -185497465 + AluSg/x SINE Alu 289 298 -11 908 279 249 27 chr1 57167375 57168046 -185496307 - L2 LINE L2 -424 2890 2071 227 305 34 0 chr1 57168252 57168311 -185496042 - L2 LINE L2 -76 3196 3136 892 133 18 12 chr1 57168905 57169071 -185495282 + MER2 DNA MER2_type 44 210 -135 1783 151 19 44 chr1 57169077 57169396 -185494957 - AluJo SINE Alu -1 311 1 186 333 90 13 chr1 57171410 57171488 -185492865 + L2 LINE L2 3181 3264 -49 290 143 161 0 chr1 57172052 57172108 -185492245 + MIR SINE MIR 194 258 -4 370 286 93 29 chr1 57172609 57172749 -185491604 + MIR SINE MIR 1 149 -113 379 286 36 18 chr1 57172919 57173031 -185491322 - MIR SINE MIR -79 129 16 288 170 0 0 chr1 57174066 57174119 -185490234 + (CA)n Simple_repeat Simple_repeat 2 54 0 180 0 0 0 chr1 57174749 57174769 -185489584 + (TCTA)n Simple_repeat Simple_repeat 3 22 0 21 36 0 0 chr1 57174772 57174800 -185489553 + AT_rich Low_complexity Low_complexity 1 28 0 267 299 126 11 chr1 57178472 57178559 -185485794 + L2 LINE L2 3127 3223 -49 223 289 0 72 chr1 57181167 57181250 -185483103 + MIR3 SINE MIR 104 180 -28 1645 184 7 7 chr1 57181813 57182091 -185482262 - AluJo SINE Alu -34 278 1 2080 132 0 3 chr1 57182155 57182450 -185481903 - AluSx SINE Alu -18 294 1 1043 156 28 113 chr1 57182461 57182502 -185481851 - L1MB2 LINE L1 -3 6168 6125 2332 71 0 10 chr1 57182502 57182796 -185481557 - AluSc SINE Alu -18 291 1 1043 156 28 113 chr1 57182796 57182829 -185481524 - L1MB2 LINE L1 -46 6125 6091 2244 92 0 3 chr1 57182829 57183121 -185481232 + AluY SINE Alu 1 291 -20 1043 156 28 113 chr1 57183121 57183328 -185481025 - L1MB2 LINE L1 -80 6091 5910 236 26 0 53 chr1 57183474 57183512 -185480841 + (TATG)n Simple_repeat Simple_repeat 1 36 0 1798 195 3 0 chr1 57183678 57183980 -185480373 - AluJo SINE Alu -9 303 1 275 244 128 58 chr1 57184794 57184966 -185479387 + MIR SINE MIR 79 262 0 23 33 0 0 chr1 57185018 57185048 -185479305 + AT_rich Low_complexity Low_complexity 1 30 0 1525 64 5 10 chr1 57185109 57185313 -185479040 - L1PA6 LINE L1 -3 6151 5949 250 338 26 13 chr1 57185577 57185654 -185478699 + MER91B DNA MER1_type 113 190 0 1878 178 7 0 chr1 57185879 57186183 -185478170 - AluJo SINE Alu -6 306 1 1287 184 12 16 chr1 57186770 57187014 -185477339 - AluJo SINE Alu -30 282 40 567 219 113 13 chr1 57187218 57187369 -185476984 - FRAM SINE Alu -11 165 1 324 310 167 19 chr1 57187488 57187697 -185476656 - L1M4 LINE L1 -1908 4238 4061 2401 73 0 3 chr1 57187697 57187997 -185476356 - AluY SINE Alu -12 299 1 324 310 167 19 chr1 57187997 57188265 -185476088 - L1M4 LINE L1 -2085 4061 3690 192 77 0 0 chr1 57188265 57188291 -185476062 + (CATA)n Simple_repeat Simple_repeat 2 27 0 221 226 32 65 chr1 57188360 57188422 -185475931 + MER5A DNA MER1_type 130 189 0 2170 124 3 0 chr1 57189104 57189403 -185474950 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 57191543 57191565 -185472788 + AT_rich Low_complexity Low_complexity 1 22 0 708 134 9 0 chr1 57192555 57192690 -185471663 + L1M2 LINE L1 1 502 -6707 1819 163 3 3 chr1 57193340 57193623 -185470730 + AluJo SINE Alu 6 288 -24 2129 110 3 16 chr1 57193707 57194016 -185470337 - AluSp SINE Alu -8 305 1 2717 176 31 0 chr1 57194045 57194568 -185469785 - L1MB5 LINE L1 -7 6167 5629 540 219 77 61 chr1 57194641 57194888 -185469465 + MER112 DNA MER1_type 3 253 -3 443 387 6 0 chr1 57194962 57195130 -185469223 + MIR SINE MIR 21 189 -73 478 187 187 66 chr1 57195458 57195525 -185468828 + MER5A DNA MER1_type 3 61 -128 2072 128 3 28 chr1 57195525 57195846 -185468507 + AluSq SINE Alu 1 313 0 478 187 187 66 chr1 57195846 57195944 -185468409 + MER5A DNA MER1_type 61 188 -1 238 86 0 0 chr1 57196484 57196519 -185467834 - L1MA9 LINE L1 0 6312 6278 406 306 50 73 chr1 57196589 57196850 -185467503 - MIR SINE MIR 0 262 8 956 189 24 29 chr1 57197172 57197378 -185466975 - MER20 DNA MER1_type -5 214 10 28 48 0 0 chr1 57197502 57197544 -185466809 + AT_rich Low_complexity Low_complexity 1 42 0 1619 179 54 0 chr1 57198171 57198451 -185465902 + AluJb SINE Alu 1 295 -17 1204 135 0 0 chr1 57198726 57198896 -185465457 + AluSg/x SINE Alu 137 306 -6 708 172 22 22 chr1 57198910 57199044 -185465309 + AluJo SINE Alu 3 136 -176 33 0 0 0 chr1 57199081 57199114 -185465239 + AT_rich Low_complexity Low_complexity 1 33 0 351 276 6 105 chr1 57199208 57199389 -185464964 - MIR3 SINE MIR -12 196 34 418 162 14 0 chr1 57199432 57199506 -185464847 - AluJ/FLAM SINE Alu -237 75 1 1173 119 0 0 chr1 57200044 57200220 -185464133 + L1PA13 LINE L1 5984 6159 -4 937 75 15 15 chr1 57201099 57201232 -185463121 - FLAM_C SINE Alu 0 133 1 292 320 13 0 chr1 57202713 57202788 -185461565 + MIR SINE MIR 35 110 -98 468 153 0 0 chr1 57203142 57203214 -185461139 + AluJ/FLAM SINE Alu 1 72 -240 1322 137 0 19 chr1 57203465 57203670 -185460683 - AluSg/x SINE Alu -26 286 86 484 275 21 93 chr1 57204313 57204506 -185459847 + MIR3 SINE MIR 19 197 -11 267 226 0 36 chr1 57204822 57204906 -185459447 + L1ME4a LINE L1 5863 5943 -178 2111 121 14 0 chr1 57204930 57205227 -185459126 + AluSx SINE Alu 1 301 -11 187 324 143 0 chr1 57206142 57206247 -185458106 - L2 LINE L2 -10 3303 3184 263 278 58 116 chr1 57207220 57207393 -185456960 + MIR3 SINE MIR 43 205 -3 182 36 0 36 chr1 57207952 57207980 -185456373 + (TA)n Simple_repeat Simple_repeat 1 27 0 836 177 6 24 chr1 57208302 57208466 -185455887 + FRAM SINE Alu 1 159 -17 22 0 0 0 chr1 57210002 57210024 -185454329 + AT_rich Low_complexity Low_complexity 1 22 0 2399 86 0 3 chr1 57210030 57210334 -185454019 - AluSg SINE Alu -7 303 1 678 306 21 32 chr1 57210634 57210748 -185453605 + MIR SINE MIR 11 125 -137 767 148 26 0 chr1 57210748 57210863 -185453490 - FLAM_C SINE Alu -15 118 1 678 306 21 32 chr1 57210863 57211002 -185453351 + MIR SINE MIR 125 262 0 238 325 81 44 chr1 57211419 57211579 -185452774 + MIR3 SINE MIR 31 196 -12 2089 154 11 16 chr1 57211741 57212105 -185452248 + MLT1A1 LTR MaLR 2 363 -2 283 161 85 5 chr1 57212141 57212229 -185452124 + MLT1D LTR MaLR 417 470 -35 22 56 0 0 chr1 57212505 57212541 -185451812 + AT_rich Low_complexity Low_complexity 1 36 0 473 106 0 0 chr1 57212542 57212608 -185451745 + Alu SINE Alu 1 66 -244 199 286 126 34 chr1 57212899 57213018 -185451335 - L2 LINE L2 -1 3312 3183 236 188 188 78 chr1 57213948 57214076 -185450277 - L1ME3A LINE L1 -2 6168 6027 1008 205 112 43 chr1 57214178 57214617 -185449736 - MER106B DNA MER1_type 0 1059 591 1149 209 0 5 chr1 57214629 57214844 -185449509 - AluJo SINE Alu -12 300 87 718 132 118 0 chr1 57214853 57215005 -185449348 - MER106B DNA MER1_type -484 575 406 1363 163 76 12 chr1 57215005 57215256 -185449097 - AluJb SINE Alu -45 267 1 407 298 63 79 chr1 57215433 57215867 -185448486 - L1MEd LINE L1 -4862 1257 839 2305 105 0 0 chr1 57215867 57216173 -185448180 - AluSg SINE Alu -4 306 1 407 298 63 79 chr1 57216173 57216486 -185447867 - L1MEd LINE L1 -5280 839 522 2177 117 0 0 chr1 57217483 57217774 -185446579 - AluSx SINE Alu -6 306 16 494 123 25 0 chr1 57217774 57217855 -185446498 + AluSg/x SINE Alu 217 299 -11 2070 131 0 0 chr1 57217941 57218257 -185446096 - AluSx SINE Alu 0 316 1 229 296 185 9 chr1 57218358 57218466 -185445887 - L2 LINE L2 0 3313 3187 612 236 94 71 chr1 57218609 57218876 -185445477 + L1ME4a LINE L1 5556 5828 -293 248 290 86 0 chr1 57218977 57219070 -185445283 + L1ME4a LINE L1 5985 6085 -36 1145 172 100 29 chr1 57219089 57219368 -185444985 + AluJo SINE Alu 1 299 -3 22 0 0 0 chr1 57219393 57219415 -185444938 + AT_rich Low_complexity Low_complexity 1 22 0 847 145 0 43 chr1 57219523 57219661 -185444692 - FRAM SINE Alu -22 154 23 305 217 225 14 chr1 57220126 57220184 -185444169 + L1ME4a LINE L1 5955 6000 -121 2038 104 3 57 chr1 57220184 57220500 -185443853 - AluSx SINE Alu -13 299 1 305 217 225 14 chr1 57220500 57220579 -185443774 + L1ME4a LINE L1 6000 6121 0 33 25 0 0 chr1 57220874 57220914 -185443439 + AT_rich Low_complexity Low_complexity 1 40 0 2163 99 3 0 chr1 57220938 57221245 -185443108 - AluSx SINE Alu 0 308 1 2248 125 7 0 chr1 57221345 57221650 -185442703 - AluSx SINE Alu -3 309 3 424 186 31 21 chr1 57221654 57221751 -185442602 + MER74A LTR ERVL 22 119 -439 381 176 0 0 chr1 57221736 57221804 -185442549 + MER74A LTR ERVL 489 556 -2 * 846 98 8 30 chr1 57222859 57222992 -185441361 - FLAM_C SINE Alu 0 133 4 347 329 134 0 chr1 57224498 57224647 -185439706 - MIR3 SINE MIR -21 187 19 1604 167 0 18 chr1 57225061 57225336 -185439017 - AluJb SINE Alu 0 312 43 318 228 198 6 chr1 57225820 57225987 -185438366 + L1ME4a LINE L1 5922 6120 -1 312 229 0 0 chr1 57226194 57226277 -185438076 + (CAT)n Simple_repeat Simple_repeat 3 85 0 207 170 0 0 chr1 57226293 57226340 -185438013 + CT-rich Low_complexity Low_complexity 1 47 0 581 204 46 0 chr1 57227024 57227132 -185437221 - FLAM_A SINE Alu -20 122 10 1948 169 3 0 chr1 57227219 57227521 -185436832 - AluJb SINE Alu -9 303 1 318 353 147 0 chr1 57227541 57227691 -185436662 - L2 LINE L2 0 3272 3101 1320 161 12 16 chr1 57227871 57228113 -185436240 + AluJb SINE Alu 67 307 -5 443 218 76 76 chr1 57228396 57228621 -185435732 + L1ME3A LINE L1 5727 5951 -219 1805 166 17 10 chr1 57228698 57228999 -185435354 + AluJb SINE Alu 1 303 -9 2533 117 102 65 chr1 57229079 57229618 -185434735 + MER34B LTR ERV1 7 565 0 290 326 142 7 chr1 57229889 57230030 -185434323 + L2 LINE L2 2500 2659 -655 1217 168 18 74 chr1 57230127 57230412 -185433941 + MLT1B LTR MaLR 1 269 -121 1668 73 13 30 chr1 57230418 57230651 -185433702 + AluSc SINE Alu 45 273 -36 2050 131 0 7 chr1 57230804 57231101 -185433252 - AluSx SINE Alu -17 295 1 7133 136 172 25 chr1 57231140 57232619 -185431734 - pTR5 LTR ERV1 0 2438 743 422 258 55 92 chr1 57232784 57232859 -185431494 + L1M4 LINE L1 4083 4159 -1987 21 0 0 0 chr1 57232859 57232880 -185431473 + AT_rich Low_complexity Low_complexity 1 21 0 2263 66 0 21 chr1 57232885 57233172 -185431181 + AluY SINE Alu 5 305 0 181 0 0 0 chr1 57233172 57233192 -185431161 + (TAA)n Simple_repeat Simple_repeat 2 180 0 422 258 55 92 chr1 57233192 57233360 -185430993 + L1M4 LINE L1 4163 4343 -1803 525 269 140 6 chr1 57233458 57233629 -185430724 - MIR SINE MIR -57 205 12 650 227 31 73 chr1 57233669 57233792 -185430561 + L1M4 LINE L1 4490 4617 -1529 2176 74 0 86 chr1 57233792 57234128 -185430225 + AluY SINE Alu 1 307 -4 650 227 31 73 chr1 57234128 57234222 -185430131 + L1M4 LINE L1 4617 4697 -1449 2481 77 0 0 chr1 57234222 57234532 -185429821 + AluY SINE Alu 1 310 -1 650 227 31 73 chr1 57234532 57234573 -185429780 + L1M4 LINE L1 4697 4738 -1408 1956 132 7 0 chr1 57234584 57234895 -185429458 + AluSx SINE Alu 1 313 0 1847 161 49 6 chr1 57235126 57235455 -185428898 + LTR39 LTR ERV1 1 343 -440 1118 183 0 39 chr1 57235438 57235646 -185428707 + LTR39 LTR ERV1 577 776 -7 * 21 36 0 0 chr1 57236231 57236259 -185428094 + AT_rich Low_complexity Low_complexity 1 28 0 1369 161 200 44 chr1 57236308 57236693 -185427660 + LTR39-int LTR ERV1 946 1390 -4941 1386 173 75 14 chr1 57236831 57237109 -185427244 + LTR39-int LTR ERV1 1372 1666 -4665 286 233 12 35 chr1 57237110 57237282 -185427071 + (TA)n Simple_repeat Simple_repeat 1 168 0 44 80 0 0 chr1 57237585 57237685 -185426668 + AT_rich Low_complexity Low_complexity 1 100 0 2115 94 28 7 chr1 57238009 57238290 -185426063 + AluSg SINE Alu 1 290 -20 194 0 39 0 chr1 57238290 57238316 -185426037 + (TA)n Simple_repeat Simple_repeat 1 27 0 289 273 25 66 chr1 57238935 57239133 -185425220 + LTR39-int LTR ERV1 7808 7997 -123 2257 110 0 0 chr1 57239157 57239457 -185424896 + AluSg SINE Alu 1 300 -10 260 132 0 0 chr1 57239485 57239523 -185424830 + LTR39-int LTR ERV1 8312 8349 -50 754 115 66 0 chr1 57239587 57239709 -185424644 + LTR39 LTR ERV1 47 176 -607 891 137 0 0 chr1 57239711 57239842 -185424511 + FLAM_C SINE Alu 1 131 -12 3732 157 11 8 chr1 57239842 57240455 -185423898 + LTR39 LTR ERV1 169 783 0 1267 153 0 14 chr1 57240742 57240951 -185423402 + AluSg/x SINE Alu 84 289 -21 355 279 128 60 chr1 57241003 57241254 -185423099 + L1ME LINE L1 5377 5647 -474 2762 182 97 81 chr1 57241256 57242161 -185422192 - MER21A LTR ERV1 -2 929 10 2501 156 10 3 chr1 57242162 57242552 -185421801 + MER57A LTR ERV1 1 393 -10 3253 192 65 34 chr1 57242566 57243267 -185421086 + MER57A-int LTR ERV1 44 772 -6765 1543 191 36 16 chr1 57243267 57243571 -185420782 + AluJo SINE Alu 1 310 -2 3253 192 65 34 chr1 57243571 57243634 -185420719 + MER57A-int LTR ERV1 772 832 -6705 383 218 90 53 chr1 57243757 57243890 -185420463 + MER57A-int LTR ERV1 851 988 -4135 515 238 26 50 chr1 57243890 57244131 -185420222 + MER34C LTR ERV1 155 430 -155 521 203 32 64 chr1 57244131 57244344 -185420009 + MER57A-int LTR ERV1 1228 1399 -3724 431 207 4 194 chr1 57244445 57244677 -185419676 + LTR49-int LTR ERV1 3275 3462 -2869 2225 123 0 0 chr1 57245786 57246087 -185418266 - AluSx SINE Alu -11 301 1 291 71 0 0 chr1 57246103 57246145 -185418208 - Alu SINE Alu -1 301 260 1977 141 10 3 chr1 57246162 57246335 -185418018 - AluSx SINE Alu -6 306 129 180 0 0 0 chr1 57246335 57246355 -185417998 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1977 141 10 3 chr1 57246355 57246485 -185417868 - AluSx SINE Alu -183 129 1 2918 152 9 39 chr1 57246486 57247051 -185417302 - MER57-int LTR ERV1 -1742 5795 5248 874 187 0 0 chr1 57247122 57247277 -185417076 + FRAM SINE Alu 11 165 -11 1643 184 3 14 chr1 57247279 57247572 -185416781 + AluJo SINE Alu 1 290 -22 2083 128 20 0 chr1 57247572 57247878 -185416475 + AluSx SINE Alu 1 312 0 379 200 0 0 chr1 57247881 57247961 -185416392 + Cheshire DNA MER1_type 621 700 -1720 2055 155 0 0 chr1 57247961 57248257 -185416096 + AluSx SINE Alu 1 296 -16 3281 164 119 55 chr1 57248257 57248681 -185415672 + Cheshire DNA MER1_type 1554 1950 -470 2375 125 22 8 chr1 57248681 57249042 -185415311 - MER47A DNA MER2_type 0 366 1 3281 164 119 55 chr1 57249042 57249432 -185414921 + Cheshire DNA MER1_type 1950 2420 0 23 79 0 13 chr1 57249476 57249512 -185414841 + AT_rich Low_complexity Low_complexity 1 36 -39 2103 132 7 0 chr1 57249512 57249808 -185414545 + AluSx SINE Alu 2 299 -13 23 79 0 13 chr1 57249808 57249847 -185414506 + AT_rich Low_complexity Low_complexity 36 75 0 363 241 23 30 chr1 57249920 57250053 -185414300 + L1ME LINE L1 5198 5329 -817 2025 119 13 13 chr1 57250131 57250443 -185413910 - AluSx SINE Alu 0 312 1 1860 128 13 40 chr1 57250563 57250867 -185413486 + AluSc SINE Alu 1 296 -13 1026 152 61 0 chr1 57250873 57251038 -185413315 + FRAM SINE Alu 1 168 -8 351 296 80 59 chr1 57251038 57251347 -185413006 + L1ME LINE L1 5483 5801 -369 443 264 80 71 chr1 57251348 57251587 -185412766 + L1ME3A LINE L1 5728 5968 -202 203 139 23 23 chr1 57251741 57251784 -185412569 + (TA)n Simple_repeat Simple_repeat 2 44 0 822 226 0 24 chr1 57251788 57251952 -185412401 - AluJo SINE Alu -31 281 122 522 242 144 26 chr1 57252069 57252263 -185412090 - L2 LINE L2 -43 3270 3054 * 1695 270 117 34 chr1 57252251 57252928 -185411425 - L2 LINE L2 -1092 2222 1490 1495 179 38 28 chr1 57253384 57253674 -185410679 + AluJb SINE Alu 1 293 -19 1025 468 14 10 chr1 57253738 57254031 -185410322 - AluJo SINE Alu -8 294 1 367 251 91 45 chr1 57254292 57254491 -185409862 - L1MC4a LINE L1 -1900 5908 5701 210 128 128 0 chr1 57254529 57254568 -185409785 - MIR SINE MIR 0 262 219 827 165 0 24 chr1 57254704 57254831 -185409522 - FLAM_A SINE Alu -9 124 1 235 264 253 0 chr1 57254917 57255004 -185409349 - L2 LINE L2 0 3313 3205 194 262 130 76 chr1 57255638 57255819 -185408534 + L2 LINE L2 1622 1792 -1522 2051 131 0 0 chr1 57255819 57256102 -185408251 + AluSx SINE Alu 1 283 -29 194 262 130 76 chr1 57256102 57256275 -185408078 + L2 LINE L2 1792 1995 -1319 279 0 0 0 chr1 57256300 57256331 -185408022 + (A)n Simple_repeat Simple_repeat 1 31 0 2190 101 10 3 chr1 57256612 57256920 -185407433 - AluSx SINE Alu -2 310 1 464 167 0 0 chr1 57256969 57257035 -185407318 - AluJ/FLAM SINE Alu -245 67 2 189 74 0 0 chr1 57257075 57257102 -185407251 + (CA)n Simple_repeat Simple_repeat 2 28 0 1651 167 23 7 chr1 57257174 57257479 -185406874 + AluJb SINE Alu 1 310 -2 2119 123 0 0 chr1 57258229 57258548 -185405805 - AluSx SINE Alu 0 319 1 850 134 0 70 chr1 57258648 57258805 -185405548 + AluSq/x SINE Alu 5 150 -163 345 149 0 149 chr1 57258810 57258897 -185405456 + AluJ/FRAM SINE Alu 229 302 0 1861 150 26 13 chr1 57259068 57259374 -185404979 + AluJb SINE Alu 1 310 -2 197 288 68 14 chr1 57260064 57260137 -185404216 - MIR3 SINE MIR -49 159 83 1880 126 28 0 chr1 57260297 57260582 -185403771 - AluJb SINE Alu -11 301 9 203 219 47 16 chr1 57260591 57260655 -185403698 + L2 LINE L2 3156 3221 -92 221 302 19 0 chr1 57260738 57260791 -185403562 + L2 LINE L2 3256 3309 -4 275 267 0 23 chr1 57260801 57260887 -185403466 + MIR SINE MIR 178 261 -1 2217 116 45 23 chr1 57261004 57261357 -185402996 - MER46B DNA MER2_type 0 236 1 2216 75 10 3 chr1 57261645 57261938 -185402415 + AluSc SINE Alu 1 295 -14 400 340 13 13 chr1 57261940 57262093 -185402260 + MIR3 SINE MIR 16 168 -40 797 164 0 0 chr1 57262115 57262231 -185402122 + FLAM_C SINE Alu 2 117 -26 183 80 0 0 chr1 57262238 57262263 -185402090 + (CA)n Simple_repeat Simple_repeat 2 26 0 239 333 39 0 chr1 57262292 57262370 -185401983 + L3 LINE CR1 1430 1510 -67 320 344 236 11 chr1 57262376 57262737 -185401616 - L3 LINE CR1 -3 1574 1133 247 248 10 139 chr1 57264437 57264485 -185399868 - L2 LINE L2 -51 3262 3232 1743 142 7 39 chr1 57264485 57264794 -185399559 + AluJb SINE Alu 1 299 -13 247 248 10 139 chr1 57264794 57264846 -185399507 - L2 LINE L2 -81 3232 3175 798 155 155 31 chr1 57264849 57265043 -185399310 - LTR64 LTR ERVK 0 558 341 1242 236 14 0 chr1 57265050 57265325 -185399028 + AluJo SINE Alu 21 299 -13 1398 165 45 72 chr1 57265327 57265660 -185398693 - LTR64 LTR ERVK -234 324 1 721 187 8 30 chr1 57265907 57266041 -185398312 - FLAM_C SINE Alu -1 132 2 1747 169 11 4 chr1 57266109 57266388 -185397965 + AluJb SINE Alu 21 301 -11 407 271 149 50 chr1 57266634 57266855 -185397498 - L2 LINE L2 0 3272 3030 2000 114 7 46 chr1 57266861 57267167 -185397186 + AluSg SINE Alu 1 294 -16 367 294 11 0 chr1 57267360 57267452 -185396901 + L2 LINE L2 3220 3312 -1 * 1319 285 99 41 chr1 57267450 57268103 -185396250 - L2 LINE L2 -583 2731 2041 1407 136 0 0 chr1 57268186 57268384 -185395969 + AluSx SINE Alu 1 198 -114 201 39 0 0 chr1 57268652 57268678 -185395675 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1782 153 0 24 chr1 57268682 57268976 -185395377 - AluJb SINE Alu -24 288 2 564 191 11 0 chr1 57268997 57269091 -185395262 + AluSx SINE Alu 200 294 -16 1749 178 20 3 chr1 57269181 57269474 -185394879 - AluJo SINE Alu -14 298 1 25 0 0 0 chr1 57269491 57269516 -185394837 + AT_rich Low_complexity Low_complexity 1 25 0 2327 96 0 7 chr1 57269781 57270082 -185394271 - AluSx SINE Alu -13 299 1 21 57 0 0 chr1 57270092 57270127 -185394226 + AT_rich Low_complexity Low_complexity 1 35 0 2213 121 0 0 chr1 57270705 57271002 -185393351 + AluSx SINE Alu 1 297 -15 881 282 111 58 chr1 57271210 57271564 -185392789 + L2 LINE L2 2709 3043 -270 1671 154 52 0 chr1 57271564 57271689 -185392664 + AluJb SINE Alu 1 118 -194 279 0 0 0 chr1 57271689 57271720 -185392633 + (CA)n Simple_repeat Simple_repeat 2 32 0 1671 154 52 0 chr1 57271720 57271866 -185392487 + AluJb SINE Alu 118 286 -26 881 282 111 58 chr1 57271866 57271929 -185392424 + L2 LINE L2 3043 3101 -212 2266 92 3 0 chr1 57271929 57272224 -185392129 + AluSg SINE Alu 1 296 -14 881 282 111 58 chr1 57272224 57272372 -185391981 + L2 LINE L2 3101 3313 0 225 0 0 0 chr1 57272591 57272616 -185391737 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 516 282 75 6 chr1 57272955 57273129 -185391224 - MIR SINE MIR -57 205 20 805 156 8 8 chr1 57273251 57273373 -185390980 - AluJb SINE Alu -189 123 2 1367 182 92 33 chr1 57273719 57273918 -185390435 + L1MD3 LINE L1 6460 6646 -1349 2276 111 0 0 chr1 57273918 57274216 -185390137 + AluSx SINE Alu 1 298 -14 1367 182 92 33 chr1 57274216 57275391 -185388962 + L1MD3 LINE L1 6646 7983 -12 214 277 0 0 chr1 57275927 57275974 -185388379 - L2 LINE L2 -6 3307 3261 2238 110 0 3 chr1 57276007 57276317 -185388036 + AluSg1 SINE Alu 1 309 0 2213 192 43 22 chr1 57276407 57276705 -185387648 - MLT1D LTR MaLR 0 505 192 2224 100 10 0 chr1 57276705 57277004 -185387349 - AluY SINE Alu -9 302 1 2213 192 43 22 chr1 57277004 57277195 -185387158 - MLT1D LTR MaLR -313 192 6 535 241 34 21 chr1 57277388 57277546 -185386807 - MIR SINE MIR -45 163 1 9141 88 7 0 chr1 57277646 57279633 -185384720 + L1PA8 LINE L1 4171 6170 -2 1321 177 0 0 chr1 57280438 57280653 -185383700 - AluJb SINE Alu -93 219 5 415 250 118 0 chr1 57280875 57281019 -185383334 + MIR SINE MIR 47 207 -55 495 229 130 52 chr1 57281113 57281305 -185383048 + MIR SINE MIR 48 254 -8 243 0 0 0 chr1 57281545 57281572 -185382781 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1555 161 0 101 chr1 57281631 57281967 -185382386 - AluJo SINE Alu 0 302 1 1157 108 0 6 chr1 57282526 57282683 -185381670 + AluSc SINE Alu 135 290 -19 305 347 77 44 chr1 57282756 57283116 -185381237 - L2 LINE L2 -262 3010 2639 1205 248 73 58 chr1 57283116 57283150 -185381203 + LTR33 LTR ERVL 1 33 -488 3951 116 42 14 chr1 57283150 57283738 -185380615 - MER6A DNA MER2_type 0 605 1 1205 248 73 58 chr1 57283738 57284208 -185380145 + LTR33 LTR ERVL 33 513 -8 954 224 92 40 chr1 57284240 57284468 -185379885 - MIR SINE MIR -21 241 2 2211 85 20 0 chr1 57284502 57284795 -185379558 + AluY SINE Alu 1 299 -12 2057 102 3 7 chr1 57284912 57285205 -185379148 - AluSx SINE Alu -15 297 6 278 148 0 19 chr1 57285209 57285263 -185379090 - AluSq SINE Alu 0 301 249 1359 77 0 51 chr1 57285267 57285463 -185378890 - AluSq SINE Alu -125 188 3 264 95 24 0 chr1 57285739 57285781 -185378572 + L2 LINE L2 3271 3313 0 481 77 0 0 chr1 57285812 57285877 -185378476 + AluSc SINE Alu 236 300 -9 2182 103 0 0 chr1 57285888 57286178 -185378175 + AluSx SINE Alu 1 290 -22 612 226 94 6 chr1 57286265 57286424 -185377929 + MLT1A1 LTR MaLR 185 357 -8 198 0 0 0 chr1 57286639 57286661 -185377692 + (CA)n Simple_repeat Simple_repeat 2 23 0 1447 187 36 59 chr1 57286906 57287211 -185377142 + AluJo SINE Alu 1 298 -4 286 328 42 0 chr1 57287550 57287669 -185376684 - L2 LINE L2 -5 3308 3185 769 209 104 80 chr1 57288205 57288454 -185375899 + MIR SINE MIR 3 257 -5 360 216 79 58 chr1 57288444 57288583 -185375770 - MIR SINE MIR -31 231 90 * 304 223 389 0 chr1 57288586 57288705 -185375648 - L2 LINE L2 -61 3252 3180 2137 110 0 13 chr1 57288705 57289013 -185375340 + AluSx SINE Alu 1 304 -8 304 223 389 0 chr1 57289013 57289068 -185375285 - L2 LINE L2 -133 3180 3010 209 33 33 0 chr1 57289433 57289463 -185374890 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2079 205 21 26 chr1 57289734 57290202 -185374151 - MLT1C LTR MaLR 0 467 2 445 355 54 0 chr1 57290280 57290446 -185373907 - MER91A DNA MER1_type -20 176 2 201 39 0 0 chr1 57290636 57290662 -185373691 + (TTCTC)n Simple_repeat Simple_repeat 4 29 0 715 273 94 53 chr1 57290663 57291141 -185373212 + MLT1K LTR MaLR 50 583 -5 569 113 38 38 chr1 57291163 57291322 -185373031 + GA-rich Low_complexity Low_complexity 3 161 0 820 195 233 26 chr1 57291440 57291815 -185372538 - LTR28 LTR ERV1 -515 505 1 203 340 105 33 chr1 57291816 57291969 -185372384 + L2 LINE L2 3134 3297 -16 182 301 55 0 chr1 57292084 57292157 -185372196 - MIR SINE MIR -116 146 70 1071 111 0 31 chr1 57292641 57292803 -185371550 - L1PA16 LINE L1 0 6166 6010 576 282 20 51 chr1 57292812 57293007 -185371346 - MIR3 SINE MIR -18 190 2 1492 177 42 7 chr1 57293044 57293327 -185371026 + AluJo SINE Alu 1 293 -19 205 302 0 0 chr1 57293669 57293712 -185370641 - L2 LINE L2 -94 3178 3136 214 226 129 0 chr1 57293719 57293781 -185370572 - MIR SINE MIR -89 173 104 362 294 143 8 chr1 57294046 57294165 -185370188 + L2 LINE L2 3138 3272 0 204 163 0 0 chr1 57294165 57294208 -185370145 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 248 250 54 0 chr1 57294402 57294458 -185369895 - L2 LINE L2 -254 3018 2960 2161 105 0 10 chr1 57295002 57295307 -185369046 - AluSx SINE Alu -10 302 1 423 279 37 74 chr1 57296163 57296353 -185368000 + MIR SINE MIR 52 234 -28 300 281 12 37 chr1 57296817 57296899 -185367454 - MIR SINE MIR -97 111 32 701 270 36 44 chr1 57297322 57297570 -185366783 - MIR SINE MIR -8 254 9 187 353 216 0 chr1 57298092 57298194 -185366159 - MIR3 SINE MIR -4 204 81 245 27 54 0 chr1 57298784 57298821 -185365532 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 238 148 98 66 chr1 57298894 57298955 -185365398 - MLT1K LTR MaLR -17 571 509 209 333 0 0 chr1 57299382 57299436 -185364917 - MIR SINE MIR -101 107 54 1169 138 4 67 chr1 57299481 57299755 -185364598 - AluJb SINE Alu 0 345 87 703 182 23 15 chr1 57299833 57299965 -185364388 + FLAM_C SINE Alu 1 133 0 450 0 0 0 chr1 57299967 57300017 -185364336 + (TA)n Simple_repeat Simple_repeat 2 51 0 876 277 159 8 chr1 57300019 57300456 -185363897 - L2 LINE L2 -622 2692 2143 741 206 192 87 chr1 57300816 57300892 -185363461 + MLT1H LTR MaLR 1 68 -481 2078 119 0 0 chr1 57300892 57301186 -185363167 - AluSx SINE Alu -18 294 1 741 206 192 87 chr1 57301186 57301548 -185362805 + MLT1H LTR MaLR 68 528 -21 203 238 185 93 chr1 57301840 57301991 -185362362 + L2 LINE L2 3149 3313 0 238 222 111 0 chr1 57302540 57302612 -185361741 + MIR SINE MIR 75 154 -108 196 299 93 21 chr1 57302627 57302724 -185361629 + L2 LINE L2 3186 3289 -24 464 321 18 24 chr1 57302744 57302909 -185361444 + MIR3 SINE MIR 42 205 -3 2135 97 13 3 chr1 57303097 57303406 -185360947 - AluSx SINE Alu 0 312 1 261 266 92 55 chr1 57304294 57304403 -185359950 + MIR SINE MIR 28 140 -122 1062 221 27 14 chr1 57304418 57304640 -185359713 + MIR SINE MIR 14 238 -24 561 282 86 25 chr1 57304748 57304911 -185359442 - MIR3 SINE MIR -19 189 17 1705 152 11 22 chr1 57304983 57305260 -185359093 - AluJb SINE Alu -30 282 9 585 284 80 82 chr1 57305785 57306186 -185358167 + L3 LINE CR1 1176 1575 -2 2840 9 0 0 chr1 57306379 57306697 -185357656 - AluYb8 SINE Alu 0 318 1 570 356 68 5 chr1 57307685 57307904 -185356449 + MIR SINE MIR 1 233 -29 245 320 31 55 chr1 57307971 57308099 -185356254 - MIR SINE MIR -50 212 88 622 311 77 11 chr1 57308673 57308900 -185355453 - MIR SINE MIR -8 254 17 227 271 17 124 chr1 57309003 57309180 -185355173 + MIR SINE MIR 76 233 -29 567 286 19 19 chr1 57309812 57309966 -185354387 + MIR SINE MIR 75 228 -34 2256 87 0 28 chr1 57310090 57310411 -185353942 - AluSx SINE Alu 0 312 1 241 339 0 0 chr1 57310411 57310473 -185353880 - L2 LINE L2 -11 3302 3241 2334 77 3 0 chr1 57310848 57311147 -185353206 + AluSx SINE Alu 1 300 -12 419 195 0 23 chr1 57311167 57311254 -185353099 + AluJ/FLAM SINE Alu 2 86 -226 195 100 0 0 chr1 57311254 57311284 -185353069 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 268 265 395 0 chr1 57311316 57311516 -185352837 + L2 LINE L2 2990 3268 -4 466 283 41 73 chr1 57311602 57311821 -185352532 - L2 LINE L2 -46 3226 3015 262 328 29 40 chr1 57312611 57312785 -185351568 + L2 LINE L2 552 723 -2591 225 254 17 0 chr1 57312833 57312892 -185351461 + MLT1K LTR MaLR 529 588 0 510 219 194 0 chr1 57313178 57313333 -185351020 - LTR33A LTR ERVL 0 523 339 351 258 105 8 chr1 57313360 57313515 -185350838 - LTR33 LTR ERVL -268 253 55 278 286 143 0 chr1 57313617 57313708 -185350645 + L2 LINE L2 3114 3217 -55 426 272 73 16 chr1 57313775 57314054 -185350299 + MLT1I LTR MaLR 74 390 -19 254 322 44 22 chr1 57314139 57314229 -185350124 + MIR SINE MIR 19 110 -152 507 332 10 34 chr1 57314671 57314879 -185349474 - MIR3 SINE MIR -1 207 5 1650 154 0 82 chr1 57314908 57315238 -185349115 + AluJb SINE Alu 1 303 -9 2383 70 0 0 chr1 57315521 57315821 -185348532 - AluSp SINE Alu -13 300 1 372 337 78 30 chr1 57316065 57316369 -185347984 + L2 LINE L2 2777 3093 -179 274 231 51 43 chr1 57316476 57316593 -185347760 + MLT1K LTR MaLR 128 314 -274 352 202 0 128 chr1 57316707 57316745 -185347608 + MLT1K LTR MaLR 488 529 -59 1928 116 49 7 chr1 57316745 57317030 -185347323 - AluSx SINE Alu -15 297 1 352 202 0 128 chr1 57317030 57317100 -185347253 + MLT1K LTR MaLR 529 582 -6 370 293 103 29 chr1 57317104 57317119 -185347234 + L2 LINE L2 3127 3139 -174 369 109 16 0 chr1 57317119 57317183 -185347170 - L1MB8 LINE L1 -2 6176 6112 370 293 103 29 chr1 57317183 57317341 -185347012 + L2 LINE L2 3139 3313 0 227 315 146 0 chr1 57317365 57317454 -185346899 - L2 LINE L2 -49 3223 3122 453 299 119 16 chr1 57317625 57317819 -185346534 + MIR SINE MIR 49 262 0 1032 163 11 124 chr1 57317835 57318117 -185346236 + MIR SINE MIR 3 252 -10 2242 77 0 3 chr1 57318158 57318443 -185345910 + AluSq SINE Alu 11 294 -19 394 289 176 56 chr1 57318555 57318929 -185345424 + L2 LINE L2 2853 3271 -1 251 300 81 105 chr1 57318952 57319285 -185345068 - L2 LINE L2 -2 3270 2946 23 0 0 0 chr1 57320484 57320507 -185343846 + AT_rich Low_complexity Low_complexity 1 23 0 1534 165 103 32 chr1 57320907 57321246 -185343107 + MLT1A1 LTR MaLR 3 365 0 194 311 172 45 chr1 57321603 57321847 -185342506 + L2 LINE L2 2854 3128 -144 305 263 15 36 chr1 57321852 57321917 -185342436 + L1ME4a LINE L1 5988 6053 -68 2341 74 0 16 chr1 57321917 57322227 -185342126 + AluY SINE Alu 1 305 -6 305 263 15 36 chr1 57322227 57322298 -185342055 + L1ME4a LINE L1 6053 6121 0 223 277 129 50 chr1 57322464 57322565 -185341788 + L2 LINE L2 3162 3270 -2 199 292 21 97 chr1 57322736 57322880 -185341473 - L2 LINE L2 -4 3268 3136 182 227 31 10 chr1 57323153 57323250 -185341103 + GA-rich Low_complexity Low_complexity 2 100 0 767 310 24 90 chr1 57324017 57324230 -185340123 + L2 LINE L2 2921 3100 -172 2397 93 0 0 chr1 57324230 57324542 -185339811 - AluSx SINE Alu 0 312 1 767 310 24 90 chr1 57324542 57324705 -185339648 + L2 LINE L2 3100 3272 0 2286 82 3 0 chr1 57324931 57325225 -185339128 - AluSp SINE Alu -18 295 1 863 213 12 0 chr1 57325429 57325593 -185338760 - FRAM SINE Alu 0 166 1 602 295 16 69 chr1 57325608 57325913 -185338440 + L1ME4a LINE L1 5483 5771 -350 338 183 83 101 chr1 57326000 57326102 -185338251 + L1ME4a LINE L1 5955 6054 -67 1763 135 53 0 chr1 57326102 57326384 -185337969 - AluJb SINE Alu -13 299 3 338 183 83 101 chr1 57326384 57326450 -185337903 + L1ME4a LINE L1 6054 6120 -1 191 393 0 0 chr1 57326475 57326536 -185337817 - L2 LINE L2 -90 3182 3122 288 255 21 21 chr1 57326575 57326669 -185337684 - U6 snRNA snRNA -7 100 7 423 303 12 47 chr1 57326687 57326848 -185337505 - MIR SINE MIR -60 202 48 1016 142 0 31 chr1 57326850 57327012 -185337341 - AluJo/FRAM SINE Alu -9 293 137 1571 174 22 0 chr1 57327012 57327287 -185337066 - AluJo SINE Alu -18 294 14 215 243 59 0 chr1 57327483 57327546 -185336807 - MIR SINE MIR -27 181 115 1850 159 10 0 chr1 57327766 57328062 -185336291 + AluSx SINE Alu 1 299 -13 1150 253 172 3 chr1 57328136 57328484 -185335869 - MLT1I LTR MaLR 0 409 3 516 356 77 17 chr1 57328655 57329017 -185335336 - L2 LINE L2 -460 2854 2471 255 217 0 0 chr1 57329282 57329342 -185335011 + (TGAA)n Simple_repeat Simple_repeat 4 63 0 240 311 100 11 chr1 57329803 57329893 -185334460 + L2 LINE L2 3211 3308 -5 349 286 12 0 chr1 57329900 57329984 -185334369 + MIR SINE MIR 5 89 -173 296 275 58 0 chr1 57329984 57330053 -185334300 + MLT1E LTR MaLR 1 73 -520 279 220 85 0 chr1 57330054 57330113 -185334240 + MIR SINE MIR 91 154 -108 14799 98 38 82 chr1 57330113 57330532 -185333821 + Tigger1 DNA MER2_type 6 442 -1976 2028 119 0 0 chr1 57330532 57330850 -185333503 + AluSx SINE Alu 7 324 0 14799 98 38 82 chr1 57330850 57332595 -185331758 + Tigger1 DNA MER2_type 442 2230 -188 952 165 23 6 chr1 57332595 57332771 -185331582 - AluJo SINE Alu -14 298 120 14799 98 38 82 chr1 57332771 57332953 -185331400 + Tigger1 DNA MER2_type 2230 2418 0 390 269 39 10 chr1 57332953 57333057 -185331296 + MIR SINE MIR 156 262 0 481 293 16 39 chr1 57333218 57333405 -185330948 + MIR SINE MIR 2 180 -65 28 29 0 0 chr1 57333455 57333490 -185330863 + AT_rich Low_complexity Low_complexity 1 35 0 396 269 46 8 chr1 57333495 57333625 -185330728 + MIR SINE MIR 114 248 -14 218 336 102 16 chr1 57333940 57334068 -185330285 - L2 LINE L2 -11 3261 3123 246 310 0 0 chr1 57334075 57334133 -185330220 - MIR SINE MIR -7 255 198 557 280 131 9 chr1 57334162 57334376 -185329977 - MIR SINE MIR -3 259 20 335 259 79 58 chr1 57334388 57334535 -185329818 - MIR SINE MIR -56 206 53 1917 142 3 0 chr1 57334535 57334830 -185329523 + AluJb SINE Alu 1 296 -16 335 259 79 58 chr1 57334830 57334871 -185329482 - MIR SINE MIR -209 53 14 197 351 0 0 chr1 57335442 57335499 -185328854 + L2 LINE L2 2259 2315 -999 398 294 80 48 chr1 57335991 57336033 -185328320 + L1ME LINE L1 5326 5365 -797 1971 137 10 0 chr1 57336033 57336332 -185328021 + AluSx SINE Alu 1 302 -10 398 294 80 48 chr1 57336332 57336476 -185327877 + L1ME LINE L1 5365 5518 -644 462 292 0 0 chr1 57336479 57336616 -185327737 + L1ME LINE L1 5625 5761 -360 316 255 174 0 chr1 57336621 57336719 -185327634 + L2 LINE L2 3158 3272 0 326 183 161 58 chr1 57337046 57337183 -185327170 + L1MC5 LINE L1 7777 7927 -34 467 170 13 0 chr1 57337265 57337368 -185326985 + HsTC2 DNA Tc2 1 1898 0 201 304 36 18 chr1 57337382 57337494 -185326859 - L2 LINE L2 -464 2850 2737 181 370 0 0 chr1 57337497 57337551 -185326802 + L2 LINE L2 3211 3264 -8 1982 120 0 27 chr1 57337911 57338211 -185326142 - AluSx SINE Alu -20 292 1 463 265 53 13 chr1 57338593 57338744 -185325609 + MIR3 SINE MIR 31 187 -21 590 213 152 33 chr1 57338785 57338986 -185325367 - MIR SINE MIR 0 262 33 243 349 26 39 chr1 57339021 57339250 -185325103 + L2 LINE L2 2826 3051 -221 446 290 136 0 chr1 57339318 57339480 -185324873 - MIR SINE MIR -76 186 3 466 308 77 30 chr1 57339956 57340125 -185324228 + MIR SINE MIR 20 196 -66 274 228 138 41 chr1 57340760 57340883 -185323470 + MIR SINE MIR 70 204 -58 2462 52 3 3 chr1 57340953 57341259 -185323094 + AluSp SINE Alu 1 306 -7 567 332 91 38 chr1 57341453 57341749 -185322604 - L2 LINE L2 -5 3267 2949 1636 179 26 0 chr1 57341749 57342051 -185322302 + AluJb SINE Alu 1 310 -2 567 332 91 38 chr1 57342051 57342094 -185322259 - L2 LINE L2 -323 2949 2910 1494 181 31 12 chr1 57342095 57342421 -185321932 + L1MC3 LINE L1 7485 7994 -1 183 200 73 55 chr1 57343379 57343434 -185320919 + MIR SINE MIR 56 111 -97 * 567 255 81 0 chr1 57343420 57343581 -185320772 - MIR SINE MIR -14 248 75 204 227 0 0 chr1 57343724 57343768 -185320585 + MER5B DNA MER1_type 3 46 -132 423 248 16 25 chr1 57343973 57344094 -185320259 + MIR SINE MIR 17 136 -126 2006 125 7 3 chr1 57344278 57344581 -185319772 - AluSx SINE Alu -6 306 3 933 215 31 5 chr1 57344582 57344773 -185319580 + MIR SINE MIR 33 228 -34 7836 226 115 37 chr1 57344986 57347442 -185316911 + L2 LINE L2 56 2703 -611 1882 126 51 3 chr1 57347463 57347756 -185316597 + AluSx SINE Alu 1 307 -5 504 133 28 126 chr1 57347789 57347882 -185316471 + L1MB7 LINE L1 6049 6125 -59 2158 90 0 0 chr1 57347882 57348171 -185316182 + AluSg SINE Alu 6 294 -16 504 133 28 126 chr1 57348171 57348220 -185316133 + L1MB7 LINE L1 6125 6177 -7 * 1310 172 27 15 chr1 57348217 57348479 -185315874 + L1MD3 LINE L1 7729 7993 -2 195 176 0 0 chr1 57348480 57348514 -185315839 + L2 LINE L2 2704 2737 -577 186 286 143 0 chr1 57348561 57348645 -185315708 + L2 LINE L2 3141 3236 -36 376 340 14 14 chr1 57348667 57348814 -185315539 + L2 LINE L2 2932 3078 -194 225 283 0 0 chr1 57348884 57348937 -185315416 + L2 LINE L2 3261 3313 0 192 348 0 0 chr1 57349467 57349536 -185314817 + MIR SINE MIR 79 147 -61 2052 123 0 0 chr1 57349541 57349834 -185314519 + AluSq SINE Alu 1 293 -20 24 0 0 0 chr1 57349834 57349858 -185314495 + AT_rich Low_complexity Low_complexity 1 24 0 1924 137 26 7 chr1 57350037 57350343 -185314010 - AluJb SINE Alu 0 312 1 2119 164 99 42 chr1 57350371 57350847 -185313506 + MLT1D LTR MaLR 1 503 -2 185 339 0 0 chr1 57351006 57351071 -185313282 + L2 LINE L2 3160 3224 -48 1598 152 36 11 chr1 57351539 57351816 -185312537 + AluJb SINE Alu 1 284 -28 287 268 14 0 chr1 57352251 57352322 -185312031 - MIR SINE MIR 0 262 191 977 176 0 26 chr1 57352415 57352608 -185311745 + AluJb SINE Alu 107 294 -18 269 26 26 0 chr1 57352614 57352652 -185311701 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2275 82 0 19 chr1 57353250 57353565 -185310788 + AluY SINE Alu 1 309 -2 268 152 0 0 chr1 57353837 57353883 -185310470 + Alu SINE Alu 250 295 -5 1642 117 0 8 chr1 57353883 57354122 -185310231 - AluSx SINE Alu -75 237 1 205 295 0 77 chr1 57354147 57354225 -185310128 - L2 LINE L2 -47 3266 3195 230 268 54 0 chr1 57354232 57354288 -185310065 - L2 LINE L2 -703 2611 2553 2094 146 51 0 chr1 57354291 57354641 -185309712 - MLT1B LTR MaLR 0 390 23 2157 113 3 0 chr1 57354642 57354944 -185309409 + AluSx SINE Alu 1 303 -9 2212 71 10 0 chr1 57354983 57355277 -185309076 - AluY SINE Alu -14 297 1 613 206 22 28 chr1 57355277 57355433 -185308920 - Charlie2 DNA MER1_type -178 2684 2528 4096 52 79 12 chr1 57355433 57355540 -185308813 + LTR61 LTR ERV1 1 99 -496 2142 123 0 3 chr1 57355540 57355848 -185308505 + AluSc SINE Alu 1 307 -2 4096 52 79 12 chr1 57355848 57356298 -185308055 + LTR61 LTR ERV1 99 595 0 613 206 22 28 chr1 57356298 57356321 -185308032 - Charlie2 DNA MER1_type -334 2528 2506 1054 76 6 57 chr1 57356321 57356478 -185307875 + MER83 LTR ERV1 1 149 -299 4384 111 5 67 chr1 57356481 57356527 -185307826 - LTR8 LTR ERV1 0 691 644 7928 51 5 0 chr1 57356527 57357488 -185306865 + LTR5 LTR ERVK 1 966 -3 4384 111 5 67 chr1 57357488 57358177 -185306176 - LTR8 LTR ERV1 -47 644 1 681 196 92 18 chr1 57358186 57358349 -185306004 + AluSp SINE Alu 129 303 -10 597 251 73 20 chr1 57358349 57358596 -185305757 - LTR37B LTR ERV1 -31 437 178 666 144 0 0 chr1 57358753 57358850 -185305503 + AluJb SINE Alu 11 107 -205 1697 132 11 28 chr1 57358870 57359188 -185305165 + AluJb SINE Alu 1 313 0 1182 179 51 4 chr1 57359275 57359510 -185304843 + AluJo SINE Alu 1 246 -66 3421 130 42 26 chr1 57359510 57359698 -185304655 - LTR9 LTR ERV1 0 612 429 2041 120 3 0 chr1 57359698 57359999 -185304354 - AluSx SINE Alu -10 302 1 3421 130 42 26 chr1 57359999 57360355 -185303998 - LTR9 LTR ERV1 -183 429 59 766 99 0 0 chr1 57360356 57360457 -185303896 + AluSg/x SINE Alu 198 298 -14 2428 71 0 0 chr1 57360457 57360768 -185303585 + AluY SINE Alu 1 311 0 486 90 0 0 chr1 57360768 57360835 -185303518 - LTR9 LTR ERV1 -545 67 1 462 164 58 10 chr1 57360878 57360982 -185303371 - Charlie2 DNA MER1_type -766 2096 1988 1674 134 32 4 chr1 57360985 57361262 -185303091 - AluSx SINE Alu -27 285 1 614 206 0 0 chr1 57361349 57361456 -185302897 + FLAM_C SINE Alu 1 107 -36 902 191 52 0 chr1 57361588 57361782 -185302571 - AluJo SINE Alu -31 281 78 225 94 0 0 chr1 57362084 57362116 -185302237 + (A)n Simple_repeat Simple_repeat 1 32 0 187 327 89 30 chr1 57362142 57362310 -185302043 + L2 LINE L2 2379 2556 -758 1890 110 29 4 chr1 57362311 57362615 -185301738 + AluSc SINE Alu 1 311 0 1145 178 90 57 chr1 57362617 57362657 -185301696 - L1ME1 LINE L1 -7 6159 6122 2049 117 0 3 chr1 57362657 57362956 -185301397 + AluSx SINE Alu 1 298 -14 1145 178 90 57 chr1 57362956 57363247 -185301106 - L1ME1 LINE L1 -44 6122 5817 1109 146 0 32 chr1 57363248 57363433 -185300920 - AluSg/x SINE Alu 0 310 132 2154 84 3 10 chr1 57363433 57363732 -185300621 - AluY SINE Alu -14 297 1 1773 212 40 36 chr1 57363732 57363873 -185300480 - L1ME1 LINE L1 -336 5828 5689 1400 203 43 0 chr1 57363873 57364154 -185300199 - AluJo SINE Alu -19 293 1 1773 212 40 36 chr1 57364154 57364174 -185300179 - L1ME1 LINE L1 -475 5689 5671 230 56 28 0 chr1 57364174 57364210 -185300143 + (TG)n Simple_repeat Simple_repeat 2 38 0 1773 212 40 36 chr1 57364210 57364551 -185299802 - L1ME1 LINE L1 -493 5671 5323 705 242 193 49 chr1 57364772 57364996 -185299357 - Charlie2 DNA MER1_type -2189 593 403 1969 114 4 0 chr1 57364996 57365322 -185299031 - AluSx SINE Alu 0 327 1 705 242 193 49 chr1 57365322 57365464 -185298889 - Charlie2 DNA MER1_type -2379 403 173 2203 150 6 15 chr1 57365478 57365818 -185298535 - MER1B DNA MER1_type 0 337 1 2470 133 25 7 chr1 57365850 57366257 -185298096 - L1MB3 LINE L1 -8 6175 5762 818 116 16 0 chr1 57366257 57366378 -185297975 - FLAM_C SINE Alu -20 123 1 1031 181 30 10 chr1 57366378 57366577 -185297776 - L1MB3 LINE L1 -394 5789 5587 307 221 189 0 chr1 57366577 57366672 -185297681 - Charlie2 DNA MER1_type -2715 147 35 2126 126 7 0 chr1 57366688 57366998 -185297355 + AluSx SINE Alu 1 312 0 1274 181 0 0 chr1 57367013 57367239 -185297114 + AluJb SINE Alu 85 310 -2 2075 110 0 13 chr1 57367240 57367550 -185296803 + AluSx SINE Alu 2 307 -5 314 138 17 0 chr1 57367552 57367610 -185296743 + GA-rich Low_complexity Low_complexity 2 60 0 2315 86 0 6 chr1 57367631 57367945 -185296408 + AluSx SINE Alu 1 312 0 224 301 112 68 chr1 57367990 57368069 -185296284 + MIR SINE MIR 14 88 -174 1692 134 0 50 chr1 57368069 57368212 -185296141 + AluSq SINE Alu 2 151 -162 2027 105 3 19 chr1 57368212 57368525 -185295828 + AluSq SINE Alu 1 308 -5 1692 134 0 50 chr1 57368525 57368708 -185295645 + AluSq SINE Alu 151 313 0 224 301 112 68 chr1 57368708 57368833 -185295520 + MIR SINE MIR 88 228 -34 478 271 13 73 chr1 57369251 57369402 -185294951 + MIR SINE MIR 103 244 -18 1213 45 13 0 chr1 57369525 57369681 -185294672 + AluY SINE Alu 146 303 -8 2195 99 3 3 chr1 57369854 57370156 -185294197 - AluSp SINE Alu -11 302 1 637 234 73 21 chr1 57370244 57370436 -185293917 - MIR SINE MIR -56 206 5 1727 161 6 22 chr1 57370488 57370804 -185293549 + 7SLRNA srpRNA srpRNA 4 314 -6 2088 105 0 3 chr1 57370806 57371113 -185293240 + AluSx SINE Alu 1 306 0 532 211 0 0 chr1 57371238 57371333 -185293020 - FLAM_C SINE Alu -34 109 15 603 352 53 50 chr1 57371560 57371958 -185292395 - L2 LINE L2 -443 2871 2473 1136 237 80 62 chr1 57372019 57372517 -185291836 - MLT1H LTR MaLR 0 549 43 242 150 17 83 chr1 57372605 57372665 -185291688 + MIR SINE MIR 89 144 -64 329 327 102 31 chr1 57373019 57373245 -185291108 + L2 LINE L2 2732 2971 -301 266 260 163 24 chr1 57373556 57373679 -185290674 - MIR SINE MIR -70 192 53 260 324 105 37 chr1 57373805 57374223 -185290130 - L2 LINE L2 -249 3023 2635 1893 134 20 3 chr1 57374223 57374522 -185289831 + AluSx SINE Alu 1 304 -8 705 204 0 0 chr1 57374524 57374656 -185289697 + FLAM_A SINE Alu 1 132 -1 260 324 105 37 chr1 57374656 57374782 -185289571 - L2 LINE L2 -637 2635 2435 27 49 0 0 chr1 57374878 57374919 -185289434 + AT_rich Low_complexity Low_complexity 1 41 0 462 231 127 22 chr1 57375196 57375330 -185289023 - L3 LINE CR1 -113 1464 1317 706 272 115 32 chr1 57375348 57375686 -185288667 - L2 LINE L2 -1 3312 2947 235 258 79 45 chr1 57375644 57375733 -185288620 - MIR SINE MIR -65 143 52 * 2013 130 0 0 chr1 57375743 57376036 -185288317 + AluSx SINE Alu 1 293 -19 1661 174 0 3 chr1 57376156 57376438 -185287915 + AluJb SINE Alu 5 285 -27 395 291 154 33 chr1 57376465 57376647 -185287706 + MIR SINE MIR 3 206 -56 1572 130 45 34 chr1 57376802 57377094 -185287259 + AluJo SINE Alu 1 295 -17 273 214 0 143 chr1 57377345 57377443 -185286910 - MIR SINE MIR -89 173 90 218 133 0 22 chr1 57377859 57377904 -185286449 + (TA)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr1 57377906 57377926 -185286427 + (CA)n Simple_repeat Simple_repeat 2 21 0 442 140 0 97 chr1 57377951 57378044 -185286309 - Alu SINE Alu 0 310 227 401 77 0 0 chr1 57378044 57378096 -185286257 + Alu SINE Alu 1 52 -259 637 213 24 118 chr1 57378198 57378271 -185286082 - L1ME4a LINE L1 -279 5842 5764 1565 98 5 0 chr1 57378271 57378485 -185285868 - AluSg/x SINE Alu -6 304 90 637 213 24 118 chr1 57378485 57378665 -185285688 - L1ME4a LINE L1 -357 5764 5613 256 288 89 17 chr1 57378745 57378868 -185285485 - MIR SINE MIR -23 185 43 188 333 17 17 chr1 57378912 57378972 -185285381 + MIR SINE MIR 91 150 -58 468 278 111 0 chr1 57379423 57379567 -185284786 + MIR SINE MIR 46 205 -57 336 298 0 106 chr1 57379708 57379849 -185284504 - MIR3 SINE MIR -50 158 33 1660 193 0 13 chr1 57379911 57380033 -185284320 + AluJo SINE Alu 1 123 -189 2475 53 0 0 chr1 57380033 57380333 -185284020 - AluY SINE Alu -11 300 1 1660 193 0 13 chr1 57380333 57380521 -185283832 + AluJo SINE Alu 123 307 -5 378 268 92 61 chr1 57381163 57381327 -185283026 + MIR SINE MIR 20 188 -74 259 372 22 15 chr1 57381420 57381557 -185282796 + MIR SINE MIR 16 153 -55 758 256 0 0 chr1 57381597 57381753 -185282600 + MER8 DNA MER2_type 1 156 -83 860 222 0 5 chr1 57381753 57381942 -185282411 - AluJo SINE Alu -5 307 120 494 167 0 36 chr1 57381942 57382026 -185282327 + MER8 DNA MER2_type 159 239 0 217 310 0 0 chr1 57382248 57382306 -185282047 - MIR SINE MIR -1 261 204 338 304 0 0 chr1 57382547 57382626 -185281727 - L2 LINE L2 -2 3270 3192 2368 82 0 13 chr1 57382972 57383153 -185281200 - AluSp SINE Alu 0 313 136 2175 58 39 32 chr1 57383153 57383462 -185280891 - AluY SINE Alu 0 311 1 2368 82 0 13 chr1 57383462 57383597 -185280756 - AluSp SINE Alu -177 136 1 180 307 98 62 chr1 57383619 57383844 -185280509 - L2 LINE L2 -634 2680 2448 192 77 0 0 chr1 57384277 57384303 -185280050 + (TTG)n Simple_repeat Simple_repeat 2 27 0 310 252 96 46 chr1 57384891 57385066 -185279287 + MIR SINE MIR 18 212 -50 192 152 0 0 chr1 57385357 57385390 -185278963 + A-rich Low_complexity Low_complexity 1 33 0 193 343 71 10 chr1 57386206 57386305 -185278048 + L2 LINE L2 2943 3047 -225 2563 64 3 6 chr1 57386423 57386735 -185277618 - AluY SINE Alu 0 311 1 1109 118 0 0 chr1 57386735 57386879 -185277474 - AluSq/x SINE Alu -168 144 1 286 165 71 82 chr1 57386993 57387078 -185277275 + MIR SINE MIR 48 131 -131 247 312 128 9 chr1 57387666 57387775 -185276578 + L2 LINE L2 3151 3272 0 1957 142 10 26 chr1 57387785 57388087 -185276266 - AluJb SINE Alu -15 297 1 991 235 93 25 chr1 57388390 57388920 -185275433 + L2 LINE L2 2701 3280 -33 2420 80 3 3 chr1 57389011 57389312 -185275041 - AluY SINE Alu -10 301 1 2351 98 3 7 chr1 57389618 57389923 -185274430 - AluSg SINE Alu -6 304 1 357 267 37 63 chr1 57389997 57390188 -185274165 + MIR3 SINE MIR 23 208 0 998 118 0 7 chr1 57390412 57390548 -185273805 + AluSq/x SINE Alu 1 135 -178 2063 146 0 0 chr1 57390548 57390843 -185273510 + AluSx SINE Alu 1 295 -17 343 257 139 0 chr1 57391293 57391394 -185272959 + MIR SINE MIR 36 150 -112 316 235 0 61 chr1 57391510 57391608 -185272745 - L1MC4 LINE L1 -1339 6703 6612 1997 111 36 7 chr1 57391640 57391919 -185272434 - AluSx SINE Alu -25 287 1 221 352 0 14 chr1 57392003 57392074 -185272279 + MIR3 SINE MIR 2 71 -137 198 298 62 51 chr1 57392139 57392317 -185272036 + L2 LINE L2 3127 3306 -7 1985 157 3 0 chr1 57392640 57392934 -185271419 + AluSx SINE Alu 1 295 -17 411 255 148 27 chr1 57393051 57393200 -185271153 + L1ME4a LINE L1 5955 6121 0 267 253 40 0 chr1 57393493 57393568 -185270785 - MIR SINE MIR -2 260 183 426 241 95 25 chr1 57393706 57393864 -185270489 - MIR SINE MIR -1 261 93 347 103 13 7 chr1 57393882 57394120 -185270233 + AluJb SINE Alu 1 302 0 201 335 112 40 chr1 57394287 57394439 -185269914 - L3 LINE CR1 -22 1555 1393 799 223 60 40 chr1 57394519 57394803 -185269550 + MER58 DNA MER1_type 1 2401 -19 2476 74 0 0 chr1 57394955 57395251 -185269102 - AluSg SINE Alu -14 296 1 1908 117 60 0 chr1 57395290 57395571 -185268782 - AluSq SINE Alu -15 298 1 181 370 11 0 chr1 57398132 57398224 -185266129 - L2 LINE L2 -188 3084 2992 819 124 118 6 chr1 57398237 57398398 -185265955 + MER53 DNA DNA 1 179 -10 705 171 23 16 chr1 57398410 57398539 -185265814 - FLAM_C SINE Alu -3 130 1 2129 148 0 0 chr1 57398546 57398857 -185265496 - AluSx SINE Alu -1 311 1 496 244 28 56 chr1 57399065 57399221 -185265132 + MIR SINE MIR 53 205 -57 2184 91 13 20 chr1 57399221 57399519 -185264834 + AluSq SINE Alu 1 296 -17 496 244 28 56 chr1 57399519 57399542 -185264811 + MIR SINE MIR 205 227 -35 738 236 99 47 chr1 57399649 57399882 -185264471 + MIR SINE MIR 2 246 -16 8663 105 47 79 chr1 57399882 57400999 -185263354 - Tigger2 DNA MER2_type 0 2718 1660 2286 100 7 0 chr1 57400999 57401298 -185263055 - AluSp SINE Alu -12 301 1 8663 105 47 79 chr1 57401298 57401707 -185262646 - Tigger2 DNA MER2_type -1058 1660 1240 876 205 0 35 chr1 57401708 57401879 -185262474 - AluJ SINE Alu -1 301 137 396 74 19 0 chr1 57401879 57401933 -185262420 - AluJ SINE Alu -166 136 82 * 3008 98 37 60 chr1 57401930 57402103 -185262250 - Tigger2 DNA MER2_type -1472 1246 1071 2060 120 17 3 chr1 57402103 57402395 -185261958 - AluSx SINE Alu -16 296 1 3008 98 37 60 chr1 57402395 57402740 -185261613 - Tigger2 DNA MER2_type -1647 1071 740 572 165 0 0 chr1 57402747 57402838 -185261515 - FLAM_C SINE Alu -18 125 35 257 80 60 0 chr1 57402844 57402894 -185261459 + Alu SINE Alu 256 308 0 1076 152 0 0 chr1 57402900 57403058 -185261295 - Tigger2 DNA MER2_type -1960 758 601 519 202 32 8 chr1 57403162 57403286 -185261067 - MER5A DNA MER1_type -45 144 18 342 216 118 59 chr1 57403456 57403609 -185260744 + MIR SINE MIR 20 181 -81 2074 150 0 0 chr1 57403737 57404037 -185260316 + AluSx SINE Alu 1 300 -12 1173 209 140 32 chr1 57404202 57404517 -185259836 + MLT1F LTR MaLR 1 349 -193 2236 78 7 14 chr1 57404517 57404810 -185259543 + AluY SINE Alu 1 291 -20 271 177 16 16 chr1 57404819 57404881 -185259472 - L1ME4a LINE L1 -95 6026 5965 1961 154 10 0 chr1 57404902 57405200 -185259153 + AluJo SINE Alu 1 301 -11 1981 136 11 0 chr1 57405780 57406083 -185258270 - AluJb SINE Alu 0 306 1 6740 113 44 38 chr1 57406416 57407018 -185257335 + Tigger3b DNA MER2_type 1 598 -2430 757 257 0 0 chr1 57407018 57407170 -185257183 + FRAM SINE Alu 1 152 -14 6740 113 44 38 chr1 57407170 57407223 -185257130 + Tigger3b DNA MER2_type 598 649 -2379 2192 108 17 0 chr1 57407223 57407538 -185256815 + AluSx SINE Alu 1 312 0 6740 113 44 38 chr1 57407538 57407825 -185256528 + Tigger3b DNA MER2_type 649 955 -2073 1619 124 124 12 chr1 57407825 57408084 -185256269 + AluSg1 SINE Alu 3 290 -19 6740 113 44 38 chr1 57408084 57408264 -185256089 + Tigger3b DNA MER2_type 955 1132 -99 577 141 0 50 chr1 57408413 57408512 -185255841 - Tigger7 DNA MER2_type -1 2486 2393 2220 117 3 3 chr1 57408512 57408820 -185255533 - AluSg SINE Alu 0 310 3 1282 212 7 51 chr1 57408836 57408990 -185255363 - Tigger7 DNA MER2_type -2220 267 129 2107 122 21 0 chr1 57408990 57409278 -185255075 + AluSx SINE Alu 1 294 -18 1282 212 7 51 chr1 57409278 57409397 -185254956 - Tigger7 DNA MER2_type -2358 129 6 365 137 0 0 chr1 57409482 57409533 -185254820 + MLT1B LTR MaLR 2 52 -322 237 65 0 0 chr1 57409567 57409598 -185254755 + (T)n Simple_repeat Simple_repeat 1 31 0 955 214 110 66 chr1 57409618 57409935 -185254418 + MLT1B LTR MaLR 60 390 0 477 75 12 12 chr1 57410027 57410107 -185254246 - L1MA10 LINE L1 -2 6332 6253 35 41 0 0 chr1 57410335 57410384 -185253969 + AT_rich Low_complexity Low_complexity 1 49 0 712 94 0 10 chr1 57410502 57410598 -185253755 + 5S rRNA rRNA 2 96 -25 1468 270 55 26 chr1 57410599 57411106 -185253247 - Charlie7 DNA MER1_type -2051 561 40 187 209 0 47 chr1 57411334 57411377 -185252976 + L2 LINE L2 3222 3262 -10 794 228 6 6 chr1 57411402 57411573 -185252780 - MER5A DNA MER1_type -1 188 18 342 216 118 59 chr1 57411743 57411896 -185252457 + MIR SINE MIR 20 181 -81 2074 150 0 0 chr1 57412024 57412324 -185252029 + AluSx SINE Alu 1 300 -12 1590 207 133 46 chr1 57412489 57412804 -185251549 + MLT1F LTR MaLR 1 370 -172 2413 88 0 0 chr1 57412804 57413098 -185251255 + AluSg SINE Alu 1 294 -16 1590 207 133 46 chr1 57413098 57413241 -185251112 + MLT1F LTR MaLR 370 499 -43 1295 156 0 5 chr1 57413244 57413475 -185250878 - AluJb SINE Alu 0 314 85 513 307 139 0 chr1 57413527 57413742 -185250611 - MIR SINE MIR -5 257 13 380 296 44 96 chr1 57414411 57414681 -185249672 - L2 LINE L2 0 3272 3017 827 159 0 0 chr1 57414783 57414915 -185249438 + FRAM SINE Alu 36 167 -9 263 311 107 0 chr1 57415080 57415202 -185249151 + L2 LINE L2 2902 3036 -236 246 347 0 0 chr1 57415277 57415349 -185249004 + L2 LINE L2 3193 3264 -8 294 214 0 30 chr1 57415356 57415463 -185248890 + MIR SINE MIR 98 148 -60 2341 113 0 0 chr1 57416361 57416663 -185247690 - AluSq SINE Alu -11 302 1 305 186 21 110 chr1 57416781 57416854 -185247499 - L1ME4a LINE L1 -25 6096 6041 2251 75 7 14 chr1 57416854 57417147 -185247206 + AluY SINE Alu 1 291 -20 305 186 21 110 chr1 57417147 57417218 -185247135 - L1ME4a LINE L1 -80 6041 5965 1961 154 10 0 chr1 57417239 57417537 -185246816 + AluJo SINE Alu 1 301 -11 1967 140 11 0 chr1 57418117 57418420 -185245933 - AluJb SINE Alu 0 306 1 7384 116 38 40 chr1 57418753 57419359 -185244994 + Tigger3b DNA MER2_type 1 607 -2421 757 257 0 0 chr1 57419359 57419511 -185244842 + FRAM SINE Alu 1 152 -14 7384 116 38 40 chr1 57419511 57419564 -185244789 + Tigger3b DNA MER2_type 607 659 -2369 2209 105 17 0 chr1 57419564 57419879 -185244474 + AluSx SINE Alu 1 312 0 7384 116 38 40 chr1 57419879 57420166 -185244187 + Tigger3b DNA MER2_type 659 947 -2081 1619 124 124 12 chr1 57420166 57420425 -185243928 + AluSg1 SINE Alu 3 290 -19 7384 116 38 40 chr1 57420425 57420710 -185243643 + Tigger3b DNA MER2_type 947 1231 0 2067 150 0 0 chr1 57420770 57421070 -185243283 + AluSx SINE Alu 1 300 -12 2278 90 10 13 chr1 57421075 57421386 -185242967 + AluSg SINE Alu 1 310 0 22 35 0 0 chr1 57421776 57421805 -185242548 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 57421881 57421909 -185242444 + GC_rich Low_complexity Low_complexity 1 28 0 204 289 217 22 chr1 57422298 57422478 -185241875 + L2 LINE L2 2439 2653 -661 217 320 120 0 chr1 57422565 57422690 -185241663 + L2 LINE L2 554 693 -2621 2070 100 17 28 chr1 57422812 57423123 -185241230 + AluSx SINE Alu 1 308 0 230 337 203 9 chr1 57423507 57424083 -185240270 + L2 LINE L2 211 898 -2416 495 278 69 57 chr1 57424268 57424513 -185239840 + MIR SINE MIR 2 249 -13 1972 104 60 0 chr1 57424706 57424975 -185239378 + AluSx SINE Alu 5 289 -23 737 82 0 0 chr1 57424985 57425083 -185239270 + AluSp/q SINE Alu 207 304 -9 2195 96 3 7 chr1 57425601 57425893 -185238460 + AluSx SINE Alu 10 300 -12 2151 59 0 0 chr1 57425893 57426147 -185238206 + AluY SINE Alu 1 255 -56 2492 144 32 42 chr1 57426443 57426655 -185237698 - Tigger2 DNA MER2_type -2237 481 268 1465 134 145 30 chr1 57426655 57426671 -185237682 - AluSg SINE Alu 0 300 287 2305 118 0 3 chr1 57426671 57426984 -185237369 - AluSx SINE Alu 0 312 1 1465 134 145 30 chr1 57426984 57427236 -185237117 - AluSg SINE Alu -13 287 1 2492 144 32 42 chr1 57427236 57427496 -185236857 - Tigger2 DNA MER2_type -2450 268 14 2161 119 0 13 chr1 57427497 57427799 -185236554 + AluSx SINE Alu 1 298 -14 2679 48 0 3 chr1 57427799 57428109 -185236244 + AluY SINE Alu 1 309 -2 247 237 172 11 chr1 57428451 57428544 -185235809 + MIR SINE MIR 39 146 -62 313 277 59 94 chr1 57428706 57428908 -185235445 + MIR SINE MIR 14 208 -54 245 358 16 16 chr1 57429051 57429174 -185235179 + L2 LINE L2 2736 2858 -456 2108 108 7 36 chr1 57429211 57429372 -185234981 - AluSx SINE Alu -16 296 147 2352 89 3 0 chr1 57429372 57429664 -185234689 - AluSp SINE Alu -18 295 3 2108 108 7 36 chr1 57429664 57429807 -185234546 - AluSx SINE Alu -165 147 1 306 330 237 7 chr1 57429830 57430130 -185234223 + L2 LINE L2 2904 3272 0 444 276 45 0 chr1 57430278 57430434 -185233919 + MIR SINE MIR 100 262 0 265 286 14 0 chr1 57430454 57430524 -185233829 - MIR SINE MIR -139 123 53 456 280 63 65 chr1 57431089 57431436 -185232917 + L1MEd LINE L1 790 1137 -5235 1987 150 3 7 chr1 57431436 57431736 -185232617 + AluSx SINE Alu 1 299 -13 456 280 63 65 chr1 57431736 57431785 -185232568 + L1MEd LINE L1 1137 1185 -5187 1407 154 47 7 chr1 57431796 57432075 -185232278 + L1MC2 LINE L1 5789 6078 -266 1552 125 155 0 chr1 57432126 57432390 -185231963 + MLT1B LTR MaLR 86 390 0 887 88 1 5 chr1 57432391 57432529 -185231824 + L1MC2 LINE L1 6077 7673 -112 239 144 155 0 chr1 57432507 57432565 -185231788 + L1MEd LINE L1 1631 1840 -4688 * 890 112 6 99 chr1 57432573 57432685 -185231668 + MLT1C LTR MaLR 322 416 -51 1955 122 52 0 chr1 57432685 57432955 -185231398 + AluJb SINE Alu 11 294 -18 890 112 6 99 chr1 57432955 57433003 -185231350 + MLT1C LTR MaLR 416 467 0 1031 227 39 8 chr1 57433003 57433263 -185231090 - L2 LINE L2 -653 2661 2394 1092 78 0 42 chr1 57433338 57433480 -185230873 + AluSq/x SINE Alu 1 136 -177 2056 108 0 73 chr1 57433480 57433795 -185230558 + AluSc SINE Alu 1 292 -17 1037 313 41 3 chr1 57433821 57434189 -185230164 - L2 LINE L2 -1648 1666 1285 725 187 24 0 chr1 57434364 57434487 -185229866 + FLAM_A SINE Alu 1 126 -7 292 264 109 40 chr1 57434611 57434914 -185229439 + L1MEc LINE L1 2023 2346 -4050 1883 159 0 29 chr1 57434922 57435231 -185229122 + AluJo SINE Alu 1 300 -12 1986 133 36 0 chr1 57435324 57435603 -185228750 + AluSx SINE Alu 1 289 -23 207 0 0 0 chr1 57435603 57435626 -185228727 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 635 184 197 0 chr1 57435713 57435860 -185228493 + MER3 DNA MER1_type 1 129 -80 242 270 287 0 chr1 57435864 57435979 -185228374 - MIR3 SINE MIR -40 168 21 1873 120 72 0 chr1 57436064 57436340 -185228013 + AluSg SINE Alu 1 296 -14 898 127 0 15 chr1 57436445 57436579 -185227774 - FLAM_C SINE Alu -1 132 1 887 220 86 25 chr1 57436622 57436867 -185227486 - MIR SINE MIR -2 260 1 509 229 32 76 chr1 57437765 57437922 -185226431 + MIR SINE MIR 113 262 0 274 207 0 35 chr1 57437989 57438047 -185226306 - MIR3 SINE MIR -13 195 140 2420 86 0 10 chr1 57438115 57438419 -185225934 - AluSx SINE Alu -11 301 1 1026 194 73 46 chr1 57439053 57439475 -185224878 + MLT1G1 LTR MaLR 51 590 0 472 165 92 0 chr1 57439588 57439697 -185224656 - MIR SINE MIR -96 166 48 2064 109 12 70 chr1 57439702 57440033 -185224320 + AluSx SINE Alu 1 312 0 2399 86 0 22 chr1 57440125 57440438 -185223915 + AluSg SINE Alu 1 306 -4 773 280 16 49 chr1 57440527 57440831 -185223522 + L2 LINE L2 3020 3313 0 195 42 0 0 chr1 57443023 57443047 -185221306 + (CCG)n Simple_repeat Simple_repeat 1 24 0 229 242 63 32 chr1 57443804 57443899 -185220454 - MIR SINE MIR -74 188 91 185 250 0 21 chr1 57444192 57444240 -185220113 + MIR SINE MIR 103 149 -59 180 261 0 22 chr1 57444350 57444396 -185219957 + L3b LINE CR1 1526 1570 -13 2518 54 7 0 chr1 57445348 57445643 -185218710 - AluSp SINE Alu -16 297 1 540 303 87 5 chr1 57446850 57447045 -185217308 + MIR SINE MIR 52 262 0 2302 101 3 0 chr1 57447958 57448254 -185216099 + AluSx SINE Alu 9 305 -7 2404 101 0 3 chr1 57448376 57448684 -185215669 - AluSp SINE Alu -6 307 1 1835 90 4 28 chr1 57448686 57448941 -185215412 - AluY SINE Alu -19 292 44 2573 66 0 0 chr1 57448941 57449241 -185215112 - AluSg SINE Alu -9 301 1 238 359 100 13 chr1 57449274 57449505 -185214848 - L2 LINE L2 -458 2856 2606 2101 138 9 21 chr1 57449506 57449846 -185214507 - MER1B DNA MER1_type 0 337 2 233 313 83 60 chr1 57449854 57450119 -185214234 - L2 LINE L2 -774 2540 2270 946 285 171 19 chr1 57450482 57451136 -185213217 + L2 LINE L2 2434 3203 -110 2431 87 0 0 chr1 57452011 57452309 -185212044 - AluSx SINE Alu -14 298 1 2279 113 0 0 chr1 57452499 57452792 -185211561 + AluSx SINE Alu 1 293 -19 1102 150 12 0 chr1 57452937 57453104 -185211249 - AluSg/x SINE Alu -12 300 132 1270 103 15 20 chr1 57453106 57453310 -185211043 + Tigger3(Golem) DNA MER2_type 2562 2764 -265 2436 58 0 10 chr1 57453314 57453607 -185210746 + AluY SINE Alu 3 292 -19 1815 97 4 4 chr1 57453705 57453942 -185210411 + AluSx SINE Alu 1 237 -75 1002 216 5 41 chr1 57454523 57454741 -185209612 - MER20 DNA MER1_type -8 211 2 263 271 80 66 chr1 57455039 57455190 -185209163 - L2 LINE L2 -16 3297 3145 * 383 231 87 58 chr1 57455176 57455349 -185209004 - MIR SINE MIR -59 203 26 383 178 0 7 chr1 57456664 57456746 -185207607 + AluS SINE Alu 1 58 -250 447 141 0 0 chr1 57506746 57506817 -185157536 - AluS SINE Alu -240 72 2 2291 109 7 0 chr1 57506818 57507122 -185157231 - AluSc SINE Alu -3 306 1 1943 123 49 0 chr1 57507124 57507408 -185156945 - AluSq SINE Alu -15 298 1 2106 133 0 13 chr1 57508437 57508739 -185155614 + AluSx SINE Alu 1 298 -14 2453 90 0 0 chr1 57509722 57510023 -185154330 + AluSq SINE Alu 1 301 -12 1734 166 0 21 chr1 57510105 57510428 -185153925 - AluSx SINE Alu 0 317 1 1982 132 13 19 chr1 57510494 57510804 -185153549 + AluJo SINE Alu 1 308 -4 2342 102 0 3 chr1 57510998 57511303 -185153050 - AluSg1 SINE Alu -5 304 1 1909 112 0 69 chr1 57511566 57511870 -185152483 + AluSq SINE Alu 4 286 -27 303 49 0 0 chr1 57511870 57511911 -185152442 + (TA)n Simple_repeat Simple_repeat 2 42 0 711 193 163 0 chr1 57512100 57512266 -185152087 + AluSg/x SINE Alu 120 312 0 2046 120 7 10 chr1 57512303 57512603 -185151750 + AluSx SINE Alu 1 299 -13 215 320 0 0 chr1 57512658 57512733 -185151620 + MIR3 SINE MIR 117 191 -17 6946 60 6 40 chr1 57513344 57515060 -185149293 - SVA Other Other -683 1384 1 2356 86 7 3 chr1 57515111 57515414 -185148939 - AluSp SINE Alu -9 304 1 2192 123 3 0 chr1 57516462 57516755 -185147598 - AluSx SINE Alu -18 294 1 211 297 0 0 chr1 57516795 57516869 -185147484 + L2 LINE L2 2146 2219 -1095 1835 161 7 0 chr1 57517004 57517289 -185147064 + AluJo SINE Alu 1 287 -25 194 341 22 87 chr1 57517294 57517479 -185146874 + L2 LINE L2 2531 2726 -588 2215 117 3 0 chr1 57517479 57517778 -185146575 + AluSg SINE Alu 1 300 -10 194 341 22 87 chr1 57517778 57517804 -185146549 + L2 LINE L2 2726 2752 -562 2552 72 0 0 chr1 57517804 57518110 -185146243 - AluY SINE Alu -5 306 1 194 341 22 87 chr1 57518110 57518252 -185146101 + L2 LINE L2 2752 2862 -452 219 390 134 8 chr1 57518343 57518589 -185145764 + L2 LINE L2 2948 3224 -48 249 200 0 18 chr1 57518606 57518661 -185145692 + L1 LINE L1 2559 2612 -3534 2087 108 10 7 chr1 57518662 57518959 -185145394 + AluSg SINE Alu 1 298 -12 45461 38 2 0 chr1 57518966 57525107 -185139246 + L1PA3 LINE L1 5 6155 0 3014 186 68 37 chr1 57525091 57525881 -185138472 + L1 LINE L1 2589 3403 -2743 * 21 36 0 0 chr1 57526439 57526467 -185137886 + AT_rich Low_complexity Low_complexity 1 28 0 517 283 97 27 chr1 57526522 57526692 -185137661 - L2 LINE L2 -58 3255 3098 1776 175 10 7 chr1 57526692 57526989 -185137364 - AluJb SINE Alu -14 298 1 517 283 97 27 chr1 57526989 57527118 -185137235 - L2 LINE L2 -215 3098 2935 1790 171 10 17 chr1 57527292 57527591 -185136762 + AluJo SINE Alu 1 297 -15 2112 141 7 0 chr1 57527591 57527896 -185136457 + AluSx SINE Alu 1 307 -5 1497 153 84 4 chr1 57529201 57529475 -185134878 - AluJb SINE Alu -16 296 1 188 217 0 22 chr1 57529739 57529785 -185134568 + MER5A DNA MER1_type 1 45 -144 1517 182 52 7 chr1 57529795 57530086 -185134267 + Charlie1a DNA MER1_type 106 409 -1046 345 213 121 64 chr1 57530753 57530894 -185133459 - L1M4 LINE L1 -1975 4171 4023 26 0 0 0 chr1 57530894 57530920 -185133433 + AT_rich Low_complexity Low_complexity 1 26 0 1208 161 48 9 chr1 57530993 57531223 -185133130 - L1MB3 LINE L1 0 6183 5945 258 314 12 0 chr1 57531224 57531310 -185133043 - MIR SINE MIR -55 153 67 324 70 0 0 chr1 57531430 57531473 -185132880 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr1 57531550 57531570 -185132783 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 2154 139 0 0 chr1 57531594 57531897 -185132456 + AluSx SINE Alu 1 303 -9 1240 160 10 15 chr1 57531938 57532144 -185132209 + AluJb SINE Alu 86 290 -22 428 325 13 51 chr1 57532195 57532281 -185132072 + L3 LINE CR1 558 646 -931 708 115 107 49 chr1 57532281 57532403 -185131950 - FLAM_C SINE Alu -4 129 1 428 325 13 51 chr1 57532403 57532550 -185131803 + L3 LINE CR1 646 782 -795 25 0 0 0 chr1 57532591 57532616 -185131737 + AT_rich Low_complexity Low_complexity 1 25 0 219 239 0 0 chr1 57533722 57533768 -185130585 + (TGG)n Simple_repeat Simple_repeat 1 46 0 227 227 0 0 chr1 57533953 57533997 -185130356 + T-rich Low_complexity Low_complexity 1 44 0 2018 126 7 7 chr1 57534517 57534819 -185129534 + AluSx SINE Alu 1 302 -10 24 53 0 0 chr1 57535037 57535075 -185129278 + AT_rich Low_complexity Low_complexity 1 38 0 231 290 97 32 chr1 57535118 57535211 -185129142 + L3 LINE CR1 966 1064 -513 203 182 0 23 chr1 57535213 57535257 -185129096 - L2 LINE L2 -5 3267 3225 748 90 36 0 chr1 57535394 57535505 -185128848 + AluY SINE Alu 2 116 -195 1676 59 0 5 chr1 57536112 57536316 -185128037 + AluY SINE Alu 102 304 -7 595 317 82 21 chr1 57536358 57536766 -185127587 + LTR16B LTR ERVL 1 464 0 636 289 58 9 chr1 57536766 57536991 -185127362 + HERV16 LTR ERVL 1 236 -4760 2404 70 33 0 chr1 57537015 57537316 -185127037 + AluY SINE Alu 1 311 0 2343 286 107 13 chr1 57537352 57538399 -185125954 + HERV16 LTR ERVL 330 1542 -3454 2193 117 0 16 chr1 57538401 57538717 -185125636 + AluSx SINE Alu 1 311 -1 3764 276 53 33 chr1 57538806 57538975 -185125378 + HERV16 LTR ERVL 1688 1852 -3191 2550 47 7 0 chr1 57538975 57539271 -185125082 + AluY SINE Alu 1 298 -13 3764 276 53 33 chr1 57539271 57540442 -185123911 + HERV16 LTR ERVL 1852 3118 -1925 1080 337 52 26 chr1 57540509 57540573 -185123780 + HERV16 LTR ERVL 3134 3195 -1801 2641 39 7 3 chr1 57540573 57540881 -185123472 + AluY SINE Alu 1 309 -2 1080 337 52 26 chr1 57540881 57541624 -185122729 + HERV16 LTR ERVL 3195 3780 -1216 1018 328 84 14 chr1 57541645 57542147 -185122206 + HERV16 LTR ERVL 4106 4681 -1032 475 320 45 21 chr1 57542379 57542813 -185121540 + ERVL LTR ERVL 4462 5373 -96 769 286 72 27 chr1 57542918 57543278 -185121075 + LTR16B LTR ERVL 20 443 -7 688 219 128 0 chr1 57543287 57543474 -185120879 - MIR SINE MIR -44 218 8 407 189 71 101 chr1 57543787 57543817 -185120536 + MER103 DNA DNA 2 31 -135 2234 123 0 0 chr1 57543817 57544110 -185120243 + AluSq SINE Alu 1 293 -20 407 189 71 101 chr1 57544110 57544248 -185120105 + MER103 DNA DNA 31 165 -1 2345 89 0 3 chr1 57544300 57544593 -185119760 + AluSx SINE Alu 11 302 -10 290 276 49 8 chr1 57544710 57544833 -185119520 + MIR SINE MIR 86 213 -49 2048 129 7 19 chr1 57545312 57545622 -185118731 - AluSq SINE Alu -7 306 1 345 61 30 15 chr1 57545622 57545688 -185118665 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 1875 138 3 58 chr1 57545688 57545999 -185118354 - 7SLRNA srpRNA srpRNA -22 298 5 1216 72 20 0 chr1 57546316 57546468 -185117885 + AluSg1 SINE Alu 1 155 -154 294 111 6 0 chr1 57546698 57546752 -185117601 + Alu SINE Alu 3 38 -263 1511 153 4 0 chr1 57546919 57547154 -185117199 + AluSg/x SINE Alu 75 310 0 2110 130 10 0 chr1 57547168 57547467 -185116886 + AluSx SINE Alu 1 302 -10 2093 113 0 42 chr1 57547609 57547918 -185116435 - AluSq SINE Alu -17 296 1 790 178 23 0 chr1 57548035 57548164 -185116189 + AluSq/x SINE Alu 5 136 -177 3631 142 70 7 chr1 57548188 57548807 -185115546 + L1MB7 LINE L1 5443 6100 -84 23 68 0 0 chr1 57548852 57548896 -185115457 + AT_rich Low_complexity Low_complexity 1 44 0 1784 117 169 3 chr1 57548911 57549218 -185115135 - MER46B DNA MER2_type -3 233 1 27 49 0 0 chr1 57549235 57549276 -185115077 + AT_rich Low_complexity Low_complexity 1 41 0 404 271 38 0 chr1 57549513 57549657 -185114696 - MIR SINE MIR -65 143 45 1324 139 5 10 chr1 57549804 57550012 -185114341 + MER2 DNA MER2_type 1 207 -138 270 0 0 0 chr1 57550053 57550083 -185114270 + (TG)n Simple_repeat Simple_repeat 1 30 0 205 261 0 0 chr1 57550428 57550474 -185113879 - L2 LINE L2 -17 3255 3210 346 219 99 141 chr1 57551580 57551772 -185112581 - MER5A DNA MER1_type 0 189 6 1828 107 8 0 chr1 57551782 57552025 -185112328 - AluSg SINE Alu -19 291 47 365 193 0 24 chr1 57552025 57552108 -185112245 - FLAM_A SINE Alu -19 114 34 25 0 0 0 chr1 57554178 57554203 -185110150 + GC_rich Low_complexity Low_complexity 1 25 0 196 311 179 0 chr1 57554898 57555004 -185109349 - MIR SINE MIR -133 129 5 488 279 51 42 chr1 57555092 57555329 -185109024 - MIR SINE MIR -6 256 18 1646 262 91 14 chr1 57555922 57556350 -185108003 - MLT1E LTR MaLR -132 461 1 1606 194 19 19 chr1 57556846 57557156 -185107197 + AluJo SINE Alu 2 311 -1 722 238 97 65 chr1 57557343 57557457 -185106896 + MIR SINE MIR 5 114 -148 653 205 39 0 chr1 57557457 57557584 -185106769 - FLAM_A SINE Alu -1 132 1 722 238 97 65 chr1 57557584 57557717 -185106636 + MIR SINE MIR 114 260 -2 1501 162 15 33 chr1 57557766 57558037 -185106316 + AluJb SINE Alu 24 289 -23 2042 142 0 7 chr1 57558509 57558812 -185105541 - AluJo SINE Alu -6 306 6 319 343 84 57 chr1 57559083 57559488 -185104865 - L2 LINE L2 -5 3267 2852 1869 174 13 19 chr1 57559529 57559840 -185104513 + AluJb SINE Alu 1 309 -3 2357 66 17 3 chr1 57559960 57560249 -185104104 + AluY SINE Alu 1 293 -18 1643 209 57 6 chr1 57560249 57560599 -185103754 + L1MC1 LINE L1 5966 6333 0 1832 125 91 3 chr1 57560924 57561211 -185103142 + AluSx SINE Alu 1 312 0 899 337 117 35 chr1 57561461 57562535 -185101818 + L2 LINE L2 1777 2939 -375 2167 101 0 4 chr1 57562677 57562955 -185101398 - AluSx SINE Alu -22 290 14 2199 110 0 3 chr1 57563230 57563529 -185100824 + AluSg SINE Alu 1 298 -12 348 241 28 9 chr1 57563672 57563780 -185100573 - MIR SINE MIR -3 259 150 407 246 57 16 chr1 57563783 57563905 -185100448 + L2 LINE L2 3185 3311 -2 * 491 252 52 0 chr1 57563904 57564019 -185100334 - MIR SINE MIR -130 132 12 209 200 0 0 chr1 57564131 57564166 -185100187 + A-rich Low_complexity Low_complexity 3 37 0 22 0 0 0 chr1 57564312 57564334 -185100019 + AT_rich Low_complexity Low_complexity 1 22 0 441 304 112 40 chr1 57564423 57564871 -185099482 - L1MC/D LINE L1 -1989 5819 5340 958 131 0 0 chr1 57565198 57565335 -185099018 - AluSg/x SINE Alu -17 293 157 186 133 0 0 chr1 57565500 57565530 -185098823 + (TG)n Simple_repeat Simple_repeat 2 31 0 2467 92 0 0 chr1 57565587 57565893 -185098460 - AluSq SINE Alu -7 306 1 180 0 0 0 chr1 57565903 57565923 -185098430 + (T)n Simple_repeat Simple_repeat 1 20 0 334 282 29 19 chr1 57565990 57566093 -185098260 - L2 LINE L2 0 3313 3210 478 147 0 0 chr1 57566127 57566202 -185098151 + FLAM_A SINE Alu 24 98 -44 477 259 70 19 chr1 57566208 57566366 -185097987 + MIR SINE MIR 20 185 -77 345 249 42 27 chr1 57566429 57566676 -185097677 - L1MC/D LINE L1 -804 5342 5219 443 266 98 38 chr1 57567633 57567817 -185096536 + MIR SINE MIR 1 195 -67 210 260 82 14 chr1 57567904 57567977 -185096376 + L2 LINE L2 3186 3263 -50 311 264 28 47 chr1 57568016 57568122 -185096231 + MIR SINE MIR 85 188 -74 1606 152 0 34 chr1 57568139 57568403 -185095950 + AluJb SINE Alu 1 255 -57 255 61 0 0 chr1 57568404 57568437 -185095916 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 431 184 31 10 chr1 57568962 57569060 -185095293 + L1M4 LINE L1 2455 2554 -3592 970 183 140 8 chr1 57569463 57569698 -185094655 + L1M4 LINE L1 4865 5130 -1016 900 140 7 7 chr1 57569706 57569842 -185094511 + AluSq/x SINE Alu 1 136 -176 2192 128 0 0 chr1 57569842 57570140 -185094213 + AluSx SINE Alu 1 298 -14 2122 125 7 0 chr1 57570142 57570459 -185093894 + AluSq SINE Alu 1 313 0 271 159 0 0 chr1 57570512 57570556 -185093797 + L1MB7 LINE L1 6100 6143 -41 7680 162 23 17 chr1 57570888 57573108 -185091245 - L1PA13 LINE L1 -5 6158 3951 2310 109 3 10 chr1 57573108 57573421 -185090932 - AluSx SINE Alu -1 311 1 7680 162 23 17 chr1 57573421 57573445 -185090908 - L1PA13 LINE L1 -2212 3951 3929 2416 78 7 0 chr1 57573445 57573738 -185090615 - AluSc SINE Alu -14 295 1 7680 162 23 17 chr1 57573738 57573761 -185090592 - L1PA13 LINE L1 -2234 3929 3905 195 324 49 10 chr1 57574038 57574140 -185090213 + MIR SINE MIR 83 188 -74 852 150 7 21 chr1 57574367 57574507 -185089846 - FLAM_C SINE Alu -5 138 1 6931 273 83 75 chr1 57574546 57574880 -185089473 - HERVI LTR ERV1 -2040 5745 5415 540 0 0 0 chr1 57574880 57574940 -185089413 + (TG)n Simple_repeat Simple_repeat 1 60 0 2114 92 19 0 chr1 57574941 57575212 -185089141 - AluSg SINE Alu -34 276 1 6931 273 83 75 chr1 57575212 57580507 -185083846 - HERVI LTR ERV1 -2369 5416 4 1114 179 72 17 chr1 57580507 57580742 -185083611 - LTR10B LTR ERV1 0 547 300 1545 121 50 104 chr1 57580880 57580953 -185083400 - MER4A LTR ERV1 -11 653 578 4760 84 3 14 chr1 57580953 57581474 -185082879 - LTR9 LTR ERV1 0 612 98 1780 79 0 0 chr1 57581474 57581689 -185082664 + AluSg/x SINE Alu 83 297 -13 4760 84 3 14 chr1 57581689 57581786 -185082567 - LTR9 LTR ERV1 -514 98 1 1545 121 50 104 chr1 57581786 57582010 -185082343 - MER4A LTR ERV1 -86 578 372 283 157 39 0 chr1 57582010 57582061 -185082292 - MER4A LTR ERV1 -351 313 261 605 97 43 11 chr1 57582061 57582154 -185082199 - MER4A LTR ERV1 -566 98 3 426 294 29 0 chr1 57582629 57582731 -185081622 - L1MD2 LINE L1 -260 6099 5995 1644 166 4 4 chr1 57583215 57583486 -185080867 - AluJo SINE Alu -9 303 33 1326 292 74 46 chr1 57583573 57584025 -185080328 - L1MC4 LINE L1 0 8042 7555 1628 148 95 18 chr1 57584025 57584308 -185080045 - AluJo SINE Alu -7 305 1 1326 292 74 46 chr1 57584308 57584684 -185079669 - L1MC4 LINE L1 -487 7555 7191 280 302 69 40 chr1 57584734 57584936 -185079417 - L2 LINE L2 0 3313 3106 1899 122 106 83 chr1 57584960 57585009 -185079344 - MER61B LTR ERV1 -29 396 350 2526 53 0 3 chr1 57585009 57585308 -185079045 - AluY SINE Alu -13 298 1 1899 122 106 83 chr1 57585308 57585523 -185078830 - MER61B LTR ERV1 -75 350 118 926 148 80 6 chr1 57585523 57585685 -185078668 + L1PA8A LINE L1 5957 6130 -1 1899 122 106 83 chr1 57585685 57585805 -185078548 - MER61B LTR ERV1 -307 118 2 22 35 0 0 chr1 57586001 57586030 -185078323 + AT_rich Low_complexity Low_complexity 1 29 0 1412 112 0 0 chr1 57586376 57586555 -185077798 + AluSx SINE Alu 1 179 -133 283 275 0 101 chr1 57586852 57586990 -185077363 + MIR SINE MIR 7 130 -132 225 0 0 0 chr1 57587133 57587158 -185077195 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 273 57 0 0 chr1 57587157 57587192 -185077161 + (TG)n Simple_repeat Simple_repeat 2 36 0 182 236 73 0 chr1 57587642 57587697 -185076656 - MIR SINE MIR -75 187 129 301 353 60 11 chr1 57588474 57588658 -185075695 + L2 LINE L2 2397 2589 -725 2205 115 3 0 chr1 57588747 57589042 -185075311 + AluSx SINE Alu 1 296 -16 190 375 104 0 chr1 57589130 57589274 -185075079 + L2 LINE L2 3098 3256 -16 2344 98 0 0 chr1 57589386 57589682 -185074671 + AluSg SINE Alu 1 296 -14 1064 155 0 0 chr1 57589685 57589846 -185074507 + AluJo/FRAM SINE Alu 138 298 -14 296 221 145 98 chr1 57589867 57590024 -185074329 + L1ME4a LINE L1 5625 5773 -348 2268 107 7 0 chr1 57590024 57590323 -185074030 + AluSq SINE Alu 2 302 -11 296 221 145 98 chr1 57590323 57590523 -185073830 + L1ME4a LINE L1 5773 5999 -122 527 159 91 204 chr1 57590546 57590707 -185073646 - L1MC4 LINE L1 0 8042 7864 2064 111 72 31 chr1 57590707 57591002 -185073351 - THE1C LTR MaLR 0 375 61 2437 75 0 0 chr1 57591002 57591295 -185073058 - AluSg SINE Alu -15 295 3 2064 111 72 31 chr1 57591295 57591359 -185072994 - THE1C LTR MaLR -314 61 1 527 159 91 204 chr1 57591359 57591382 -185072971 - L1MC4 LINE L1 -178 7864 7840 2240 87 21 0 chr1 57591382 57591668 -185072685 - AluSc SINE Alu -17 292 1 527 159 91 204 chr1 57591668 57591683 -185072670 - L1MC4 LINE L1 -202 7840 7825 2449 74 3 0 chr1 57591683 57591980 -185072373 - AluY SINE Alu -13 298 1 527 159 91 204 chr1 57591980 57591991 -185072362 - L1MC4 LINE L1 -217 7825 7814 1833 174 0 3 chr1 57591991 57592279 -185072074 - AluJo SINE Alu -25 287 1 527 159 91 204 chr1 57592279 57592418 -185071935 - L1MC4 LINE L1 -228 7814 7730 822 138 0 8 chr1 57592422 57592545 -185071808 + FLAM_C SINE Alu 5 126 -7 2321 106 3 0 chr1 57592553 57592854 -185071499 + AluSp SINE Alu 1 302 -11 1979 145 0 0 chr1 57592882 57593164 -185071189 + AluSx SINE Alu 1 282 -30 1445 105 0 0 chr1 57593164 57593354 -185070999 - AluSx SINE Alu -122 190 1 3790 196 83 32 chr1 57593354 57593716 -185070637 - L1MC4 LINE L1 -338 7704 7362 2518 72 0 3 chr1 57593716 57594021 -185070332 + AluY SINE Alu 1 304 -7 3790 196 83 32 chr1 57594021 57594613 -185069740 - L1MC4 LINE L1 -680 7362 6702 306 0 0 0 chr1 57594613 57594647 -185069706 + (CA)n Simple_repeat Simple_repeat 2 35 0 1146 136 22 0 chr1 57594652 57594836 -185069517 + Charlie1 DNA MER1_type 1772 1959 -802 2219 114 7 0 chr1 57594837 57595144 -185069209 + AluSx SINE Alu 1 309 -3 716 138 24 0 chr1 57595150 57595273 -185069080 + Charlie1 DNA MER1_type 2155 2280 -481 512 165 0 0 chr1 57595274 57595353 -185069000 + AluJ/FLAM SINE Alu 2 80 -232 10500 71 23 1 chr1 57595355 57597029 -185067324 - L1P3 LINE L1 -482 5672 3971 2170 120 0 0 chr1 57597029 57597321 -185067032 - AluSx SINE Alu -20 292 1 676 172 83 0 chr1 57597324 57597481 -185066872 + Charlie1 DNA MER1_type 2592 2761 0 832 220 72 0 chr1 57597484 57597693 -185066660 - L1MC4 LINE L1 -2032 5776 5553 574 307 67 89 chr1 57598235 57599189 -185065164 - L2 LINE L2 0 3272 2340 349 183 118 0 chr1 57599191 57599284 -185065069 - MIR SINE MIR -127 135 32 204 315 71 16 chr1 57599774 57599901 -185064452 + MIR3 SINE MIR 5 138 -70 689 204 32 19 chr1 57600430 57600518 -185063835 - MER63C DNA MER1_type -130 931 839 863 157 24 0 chr1 57600518 57600684 -185063669 + L1MA4 LINE L1 6125 6294 -6 689 204 32 19 chr1 57600684 57600751 -185063602 - MER63C DNA MER1_type -222 839 774 3254 146 88 122 chr1 57600751 57601353 -185063000 + Tigger6a DNA MER2_type 1 622 -975 2193 113 0 0 chr1 57601353 57601657 -185062696 + AluSx SINE Alu 1 304 0 3254 146 88 122 chr1 57601657 57601782 -185062571 + Tigger6a DNA MER2_type 622 750 -847 1616 180 3 35 chr1 57601782 57602093 -185062260 + AluJo SINE Alu 1 301 -11 3254 146 88 122 chr1 57602093 57602274 -185062079 + Tigger6a DNA MER2_type 750 880 -203 337 71 0 0 chr1 57602275 57602317 -185062036 + L1M4 LINE L1 4879 4920 -1226 1870 158 3 7 chr1 57602318 57602609 -185061744 + AluJo SINE Alu 1 290 -22 2237 118 0 7 chr1 57602627 57602923 -185061430 + AluSq SINE Alu 1 294 -19 2293 88 0 7 chr1 57602932 57603228 -185061125 + AluSc SINE Alu 1 294 -15 237 178 137 55 chr1 57603276 57603390 -185060963 - AluS SINE Alu 0 342 223 474 171 34 0 chr1 57603390 57603478 -185060875 + L1M4 LINE L1 5078 5168 -978 1732 186 84 6 chr1 57603478 57603823 -185060530 - MER63C DNA MER1_type -321 609 238 209 255 128 39 chr1 57603842 57603944 -185060409 - MIR3 SINE MIR -26 182 72 603 123 0 90 chr1 57604105 57604227 -185060126 + AluJb SINE Alu 192 302 -10 231 273 216 0 chr1 57604718 57604806 -185059547 - MIR SINE MIR -63 145 39 610 284 74 0 chr1 57604898 57605127 -185059226 - MIR SINE MIR 0 262 17 2252 101 3 25 chr1 57605231 57605549 -185058804 + AluSq SINE Alu 1 311 -2 2217 126 0 0 chr1 57605553 57605855 -185058498 + AluSx SINE Alu 1 302 -10 343 288 80 63 chr1 57605899 57606201 -185058152 - L2 LINE L2 -1 3312 3006 519 260 41 86 chr1 57606235 57606519 -185057834 - L2 LINE L2 -432 2882 2614 2014 127 58 14 chr1 57606519 57606811 -185057542 + AluSx SINE Alu 1 305 -7 519 260 41 86 chr1 57606811 57606864 -185057489 - L2 LINE L2 -700 2614 2560 421 254 49 8 chr1 57606893 57607015 -185057338 - MIR SINE MIR -33 229 103 3184 174 14 82 chr1 57607318 57608060 -185056293 - LTR8 LTR ERV1 0 691 1 499 292 13 7 chr1 57608083 57608237 -185056116 - MIR3 SINE MIR -24 184 30 2033 118 59 0 chr1 57608549 57608838 -185055515 - AluSg SINE Alu -4 306 1 227 315 62 46 chr1 57608940 57609070 -185055283 + MIR3 SINE MIR 60 191 -17 273 247 12 35 chr1 57609425 57609510 -185054843 + MIR SINE MIR 21 103 -159 840 193 0 0 chr1 57609721 57609866 -185054487 - FRAM SINE Alu -7 169 25 2159 89 4 4 chr1 57609924 57610249 -185054104 + AluY SINE Alu 1 325 0 2372 56 0 7 chr1 57610285 57610611 -185053742 + AluY SINE Alu 1 324 0 1921 104 39 0 chr1 57611027 57611286 -185053067 + AluSx SINE Alu 44 312 0 851 231 19 78 chr1 57612046 57612315 -185052038 - MIR SINE MIR -3 259 7 2138 119 0 7 chr1 57612540 57612826 -185051527 + AluSq SINE Alu 1 286 -27 198 0 0 0 chr1 57612826 57612848 -185051505 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2435 79 0 3 chr1 57613730 57614033 -185050320 + AluSp SINE Alu 1 302 -11 1312 135 37 37 chr1 57614047 57614262 -185050091 + AluJo SINE Alu 85 299 -13 732 134 22 30 chr1 57614594 57614728 -185049625 + FLAM_A SINE Alu 1 133 0 243 0 0 0 chr1 57614743 57614770 -185049583 + (GA)n Simple_repeat Simple_repeat 2 28 0 217 268 110 39 chr1 57614927 57615054 -185049299 - L2 LINE L2 0 3313 3178 284 280 126 28 chr1 57615060 57615203 -185049150 + MIR SINE MIR 29 185 -77 180 0 0 0 chr1 57615249 57615269 -185049084 + (TTA)n Simple_repeat Simple_repeat 1 20 0 277 269 50 34 chr1 57615312 57615431 -185048922 - L2 LINE L2 -237 3035 2915 923 157 0 0 chr1 57615728 57615862 -185048491 + AluJo SINE Alu 1 134 -178 277 229 8 0 chr1 57616055 57616133 -185048220 + MIR SINE MIR 84 146 -62 732 306 38 52 chr1 57616438 57616781 -185047572 + LTR16A LTR ERVL 113 450 0 200 319 0 14 chr1 57616998 57617067 -185047286 - L2 LINE L2 0 3272 3205 609 161 0 0 chr1 57617281 57617374 -185046979 + AluSg/x SINE Alu 86 178 -134 956 158 14 0 chr1 57617376 57617522 -185046831 + AluSg/x SINE Alu 142 289 -21 2235 100 14 3 chr1 57617524 57617815 -185046538 + AluSg SINE Alu 1 294 -16 2457 88 0 0 chr1 57617817 57618124 -185046229 + AluSg SINE Alu 1 307 -3 2324 14 0 22 chr1 57618146 57618422 -185045931 + L1PA4 LINE L1 5886 6155 0 2154 83 0 0 chr1 57618538 57618803 -185045550 + AluSq SINE Alu 1 265 -48 2150 129 3 0 chr1 57618831 57619134 -185045219 + AluSx SINE Alu 1 304 -8 978 148 6 12 chr1 57619297 57619459 -185044894 + FAM SINE Alu 1 47 -2 234 203 0 58 chr1 57619459 57619528 -185044825 + GA-rich Low_complexity Low_complexity 1 65 0 1867 149 3 26 chr1 57619694 57619996 -185044357 - AluSx SINE Alu -17 295 1 2310 96 13 0 chr1 57620207 57620508 -185043845 + AluSp SINE Alu 1 305 -8 410 218 64 48 chr1 57620681 57620843 -185043510 + MIR SINE MIR 16 174 -62 593 240 14 83 chr1 57620906 57621164 -185043189 - MER46C DNA MER2_type 0 338 1 1409 154 52 66 chr1 57621227 57621362 -185042991 + AluJo SINE Alu 2 137 -165 1576 98 5 23 chr1 57621362 57621524 -185042829 - AluSc SINE Alu -16 293 134 2170 104 0 13 chr1 57621524 57621822 -185042531 - AluSg SINE Alu -16 294 1 1576 98 5 23 chr1 57621822 57621874 -185042479 - AluSc SINE Alu -175 134 83 1409 154 52 66 chr1 57621874 57622024 -185042329 + AluJo SINE Alu 137 283 -19 306 167 17 17 chr1 57622034 57622094 -185042259 + LTR16A1 LTR ERVL 92 151 -306 425 251 269 0 chr1 57622157 57622328 -185042025 + LTR16A1 LTR ERVL 241 457 0 2333 296 92 38 chr1 57622329 57622629 -185041724 + HERV16 LTR ERVL 2 284 -4945 1976 151 3 19 chr1 57622629 57622941 -185041412 + AluJo SINE Alu 1 307 -5 2333 296 92 38 chr1 57622941 57622956 -185041397 + HERV16 LTR ERVL 284 297 -4932 2346 109 0 3 chr1 57622956 57623268 -185041085 + AluY SINE Alu 1 311 0 2333 296 92 38 chr1 57623268 57624339 -185040014 + HERV16 LTR ERVL 297 1584 -3645 1720 96 30 15 chr1 57624457 57624727 -185039626 + L1MB2 LINE L1 5894 6167 -4 23 0 0 0 chr1 57624727 57624750 -185039603 + AT_rich Low_complexity Low_complexity 1 23 0 1516 162 70 7 chr1 57624759 57625030 -185039323 + AluJb SINE Alu 5 292 -20 4198 86 40 19 chr1 57625030 57625192 -185039161 - L1MA3 LINE L1 -9 6296 6139 1917 130 10 29 chr1 57625192 57625500 -185038853 - AluSx SINE Alu -10 302 1 4198 86 40 19 chr1 57625500 57625957 -185038396 - L1MA3 LINE L1 -166 6139 5664 2187 270 47 11 chr1 57626033 57626607 -185037746 + HERV16 LTR ERVL 1743 2337 -2659 2035 127 3 13 chr1 57626610 57626918 -185037435 + AluSx SINE Alu 1 305 -7 1803 91 0 0 chr1 57626985 57627206 -185037147 - AluSx SINE Alu -91 221 1 1711 171 0 18 chr1 57628122 57628397 -185035956 + AluJb SINE Alu 12 281 -31 429 20 0 0 chr1 57628402 57628452 -185035901 + (CA)n Simple_repeat Simple_repeat 2 51 0 4710 144 74 39 chr1 57628453 57628673 -185035680 - L1MB3 LINE L1 -19 6164 5953 3455 134 11 21 chr1 57628673 57629204 -185035149 + MER1A DNA MER1_type 1 526 -1 4710 144 74 39 chr1 57629204 57629799 -185034554 - L1MB3 LINE L1 -230 5953 5380 1744 190 0 19 chr1 57629799 57630115 -185034238 - AluJb SINE Alu -2 310 1 4710 144 74 39 chr1 57630115 57630232 -185034121 - L1MB3 LINE L1 -803 5380 5269 1310 165 34 121 chr1 57630232 57630554 -185033799 - AluJo SINE Alu -18 294 1 4710 144 74 39 chr1 57630554 57630700 -185033653 - L1MB3 LINE L1 -914 5269 5036 2151 118 3 7 chr1 57630700 57631005 -185033348 - AluSx SINE Alu -8 304 1 1456 144 10 80 chr1 57631009 57631321 -185033032 - AluJb SINE Alu -22 290 1 2504 58 6 13 chr1 57631323 57631636 -185032717 - AluY SINE Alu 0 311 1 910 145 0 0 chr1 57631636 57631767 -185032586 - AluY SINE Alu -178 133 3 410 297 0 8 chr1 57631787 57631905 -185032448 + L1ME LINE L1 5533 5649 -472 2300 87 0 10 chr1 57631908 57632207 -185032146 + AluSq SINE Alu 1 296 -17 229 200 0 0 chr1 57632233 57632288 -185032065 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2186 104 10 10 chr1 57632289 57632598 -185031755 - AluSg SINE Alu -1 309 1 1633 128 37 77 chr1 57632610 57632908 -185031445 - AluJb SINE Alu -26 286 1 1951 186 69 126 chr1 57632916 57632956 -185031397 - L1MB3 LINE L1 -1118 5028 4987 2200 108 0 0 chr1 57632956 57633244 -185031109 - AluSx SINE Alu -24 288 1 1951 186 69 126 chr1 57633244 57633455 -185030898 - L1MB3 LINE L1 -1159 4987 4765 581 67 11 56 chr1 57633455 57633475 -185030878 - AluY SINE Alu -225 86 67 2065 79 0 11 chr1 57633475 57633741 -185030612 - AluSc SINE Alu -12 297 35 581 67 11 56 chr1 57633741 57633809 -185030544 - AluY SINE Alu -244 67 2 1951 186 69 126 chr1 57633809 57634231 -185030122 - L1MB3 LINE L1 -1381 4765 4326 2030 116 25 7 chr1 57634231 57634516 -185029837 + AluSg SINE Alu 1 290 -20 1951 186 69 126 chr1 57634516 57634570 -185029783 - L1MB3 LINE L1 -1820 4326 4270 2371 74 0 35 chr1 57634571 57634881 -185029472 - AluY SINE Alu -12 299 1 2327 105 0 3 chr1 57634881 57635187 -185029166 - AluSq SINE Alu -8 305 1 1788 144 39 14 chr1 57635197 57635482 -185028871 - AluSx SINE Alu -20 292 1 217 303 96 62 chr1 57635953 57636080 -185028273 + MIR SINE MIR 13 149 -113 1947 118 52 7 chr1 57636080 57636369 -185027984 + AluSx SINE Alu 1 302 -10 217 303 96 62 chr1 57636369 57636419 -185027934 + MIR SINE MIR 149 196 -66 181 253 187 27 chr1 57636598 57636673 -185027680 - L2 LINE L2 -625 2689 2603 208 212 76 45 chr1 57636844 57636910 -185027443 - MIR3 SINE MIR -31 177 110 186 43 0 0 chr1 57637404 57637427 -185026926 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr1 57637592 57637629 -185026724 + AT_rich Low_complexity Low_complexity 1 37 0 463 282 106 48 chr1 57638007 57638063 -185026290 - MIR3 SINE MIR -7 201 150 1615 176 59 0 chr1 57638063 57638352 -185026001 + AluSq SINE Alu 1 306 -7 463 282 106 48 chr1 57638352 57638483 -185025870 - MIR3 SINE MIR -58 150 3 386 200 27 9 chr1 57639721 57639831 -185024522 + L1MC4 LINE L1 7742 7853 -189 1831 174 0 3 chr1 57639849 57640137 -185024216 + AluJo SINE Alu 1 287 -25 2277 93 0 0 chr1 57640148 57640437 -185023916 + AluY SINE Alu 1 289 -22 1287 336 118 34 chr1 57640579 57641651 -185022702 - L2 LINE L2 -375 2939 1777 1795 129 91 3 chr1 57641900 57642186 -185022167 - AluSx SINE Alu -1 311 1 5558 188 32 18 chr1 57642511 57642861 -185021492 - L1MC1 LINE L1 0 6613 6269 2250 76 17 10 chr1 57642861 57643152 -185021201 - AluY SINE Alu -18 293 1 5558 188 32 18 chr1 57643152 57643959 -185020394 - L1MC1 LINE L1 -344 6269 5474 2080 158 0 6 chr1 57643959 57644270 -185020083 - AluJb SINE Alu -3 309 1 5558 188 32 18 chr1 57644270 57645145 -185019208 - L1MC1 LINE L1 -1139 5474 4552 2263 105 3 7 chr1 57645164 57645468 -185018885 - AluSx SINE Alu -9 303 1 310 232 0 0 chr1 57645470 57645552 -185018801 - L1MC1 LINE L1 -4072 2535 2454 2306 113 0 0 chr1 57645572 57645873 -185018480 - AluSx SINE Alu -11 301 1 515 195 35 53 chr1 57645893 57646062 -185018291 - L1MC1 LINE L1 -4762 1664 1499 2117 140 0 3 chr1 57646062 57646370 -185017983 - AluSx SINE Alu -5 307 1 309 221 0 0 chr1 57646372 57646449 -185017904 - L1MEc LINE L1 -4072 2535 2459 22 0 0 0 chr1 57646449 57646471 -185017882 + AT_rich Low_complexity Low_complexity 1 22 0 2307 108 0 0 chr1 57646478 57646775 -185017578 - AluSx SINE Alu -15 297 1 7392 141 77 36 chr1 57646795 57646964 -185017389 - L1MEc LINE L1 -4762 1664 1503 1957 135 0 3 chr1 57646964 57647252 -185017101 - AluSx SINE Alu -5 307 21 7392 141 77 36 chr1 57647252 57647529 -185016824 - L1MEc LINE L1 -4923 1503 1239 198 0 0 0 chr1 57647529 57647551 -185016802 + (TTA)n Simple_repeat Simple_repeat 2 23 0 7392 141 77 36 chr1 57647551 57648243 -185016110 - L1MEc LINE L1 -5187 1239 577 2228 108 0 3 chr1 57648243 57648538 -185015815 + AluSx SINE Alu 11 304 -8 7392 141 77 36 chr1 57648538 57648857 -185015496 - L1MEc LINE L1 -5849 577 273 1693 192 3 7 chr1 57648857 57649164 -185015189 - AluJb SINE Alu -6 306 1 1612 161 34 37 chr1 57649164 57649461 -185014892 - AluJo SINE Alu -15 297 1 7392 141 77 36 chr1 57649461 57649580 -185014773 - L1MEc LINE L1 -6152 274 19 1971 108 11 18 chr1 57650312 57650639 -185013714 - AluSx SINE Alu 0 325 1 364 263 0 0 chr1 57650649 57650729 -185013624 + MLT2B1 LTR ERVL 380 459 -61 796 176 20 0 chr1 57650790 57650938 -185013415 - MLT2B1 LTR ERVL -369 151 1 360 306 117 11 chr1 57651645 57651825 -185012528 - MIR SINE MIR 0 262 64 851 158 8 0 chr1 57651828 57651961 -185012392 + AluJo SINE Alu 1 134 -178 2152 86 3 95 chr1 57652286 57652622 -185011731 - AluSp SINE Alu -8 305 1 352 355 49 65 chr1 57652789 57653113 -185011240 - L2 LINE L2 -22 3250 2932 2043 127 30 0 chr1 57653121 57653459 -185010894 - L1MB7 LINE L1 -9 6175 5828 646 302 74 54 chr1 57653543 57653990 -185010363 - L2 LINE L2 -458 2856 2401 696 248 231 64 chr1 57654352 57654454 -185009899 - MLT1G1 LTR MaLR -28 539 455 2153 114 0 0 chr1 57654454 57654743 -185009610 - AluSx SINE Alu -23 289 1 696 248 231 64 chr1 57654743 57655060 -185009293 - MLT1G1 LTR MaLR -112 455 51 331 178 55 0 chr1 57655126 57655199 -185009154 - MLT1G1 LTR MaLR -516 79 3 196 317 125 10 chr1 57655223 57655327 -185009026 - L2 LINE L2 -904 2410 2295 691 179 0 57 chr1 57655339 57655479 -185008874 + FLAM_A SINE Alu 1 132 -1 1991 149 3 7 chr1 57655926 57656234 -185008119 - AluJb SINE Alu -5 307 1 220 388 49 27 chr1 57656235 57656418 -185007935 - L2 LINE L2 -601 2713 2527 238 353 78 0 chr1 57656461 57656577 -185007776 - L2 LINE L2 0 3272 3148 2204 99 3 3 chr1 57657157 57657449 -185006904 + AluSx SINE Alu 1 292 -20 350 279 48 10 chr1 57657769 57657873 -185006480 + HAL1 LINE L1 398 505 -2002 2038 139 0 0 chr1 57657933 57658245 -185006108 + AluSx SINE Alu 1 312 0 429 238 0 48 chr1 57658246 57658372 -185005981 - L2 LINE L2 -2096 1218 1099 1717 195 166 20 chr1 57658412 57658864 -185005489 - MLT2B1 LTR ERVL 0 520 3 202 244 0 0 chr1 57658976 57659021 -185005332 + T-rich Low_complexity Low_complexity 2 46 0 204 268 41 41 chr1 57659286 57659383 -185004970 + MIR3 SINE MIR 108 204 -4 21 57 0 0 chr1 57660627 57660662 -185003691 + AT_rich Low_complexity Low_complexity 1 35 0 1238 211 23 4 chr1 57660801 57661077 -185003276 - LTR10B LTR ERV1 0 547 300 9710 276 35 27 chr1 57661203 57663538 -185000815 - HERVI LTR ERV1 -1 7784 5471 486 0 0 0 chr1 57663538 57663592 -185000761 + (TG)n Simple_repeat Simple_repeat 1 54 0 1911 112 19 0 chr1 57663593 57663860 -185000493 - AluSg SINE Alu -34 276 5 9710 276 35 27 chr1 57663860 57665153 -184999200 - HERVI LTR ERV1 -2313 5472 4123 6020 263 30 22 chr1 57665172 57669159 -184995194 - HERVI LTR ERV1 -3665 4120 4 1012 209 60 4 chr1 57669159 57669394 -184994959 - LTR10B LTR ERV1 0 547 300 1415 121 50 104 chr1 57669532 57669605 -184994748 - MER4A LTR ERV1 -11 653 578 4701 84 3 14 chr1 57669605 57670126 -184994227 - LTR9 LTR ERV1 0 612 98 1764 79 0 0 chr1 57670126 57670341 -184994012 + AluSg/x SINE Alu 83 297 -13 4701 84 3 14 chr1 57670341 57670438 -184993915 - LTR9 LTR ERV1 -514 98 1 1415 121 50 104 chr1 57670438 57670662 -184993691 - MER4A LTR ERV1 -86 578 372 260 157 39 0 chr1 57670662 57670713 -184993640 - MER4A LTR ERV1 -351 313 261 560 97 43 11 chr1 57670713 57670806 -184993547 - MER4A LTR ERV1 -566 98 3 394 294 29 0 chr1 57671278 57671380 -184992973 - L1MD2 LINE L1 -260 6099 5995 1655 166 4 4 chr1 57671864 57672135 -184992218 - AluJo SINE Alu -9 303 33 1094 302 68 40 chr1 57672222 57672674 -184991679 - L1MC4 LINE L1 0 8042 7555 1637 149 96 18 chr1 57672674 57672956 -184991397 - AluJo SINE Alu -8 304 1 1094 302 68 40 chr1 57672956 57673332 -184991021 - L1MC4 LINE L1 -487 7555 7191 338 302 69 40 chr1 57673382 57673584 -184990769 - L2 LINE L2 0 3313 3106 274 140 0 20 chr1 57673608 57673658 -184990695 - MER61B LTR ERV1 -29 396 348 2527 43 0 3 chr1 57673658 57673957 -184990396 - AluY SINE Alu -13 298 1 372 315 49 72 chr1 57675156 57675461 -184988892 + L1ME4a LINE L1 5618 5915 -206 358 336 0 0 chr1 57675857 57675970 -184988383 - L2 LINE L2 -541 2773 2661 1602 175 53 43 chr1 57676005 57676412 -184987941 + L1ME2 LINE L1 5765 6332 -2 422 308 104 67 chr1 57676414 57676800 -184987553 - L2 LINE L2 -692 2622 2223 2439 58 0 0 chr1 57676948 57677239 -184987114 - AluY SINE Alu -16 295 5 528 267 24 36 chr1 57677499 57677664 -184986689 - MIR3 SINE MIR 0 208 46 1011 219 9 9 chr1 57677857 57678090 -184986263 + Charlie3 DNA MER1_type 3 235 -2475 2058 120 0 10 chr1 57678243 57678534 -184985819 - AluSq SINE Alu -25 288 1 264 236 36 0 chr1 57678543 57678598 -184985755 + MIR SINE MIR 91 147 -61 2379 101 7 0 chr1 57679056 57679363 -184984990 + AluSq SINE Alu 1 309 -4 25 0 0 0 chr1 57679726 57679751 -184984602 + AT_rich Low_complexity Low_complexity 1 25 0 531 246 72 14 chr1 57680075 57680213 -184984140 - MIR SINE MIR -113 149 4 1645 153 51 0 chr1 57680415 57680689 -184983664 - AluSx SINE Alu -24 288 1 1294 165 9 14 chr1 57680870 57681082 -184983271 + AluJb SINE Alu 85 295 -17 781 149 30 42 chr1 57682723 57682925 -184981428 + MER6 DNA MER2_type -65 865 0 224 360 163 14 chr1 57683064 57683211 -184981142 - L2 LINE L2 0 3272 3104 277 215 91 33 chr1 57683651 57683772 -184980581 - L1MC5 LINE L1 -51 7910 7783 300 250 118 68 chr1 57683800 57684020 -184980333 - L1ME2 LINE L1 -1 6163 5933 26 50 0 0 chr1 57686810 57686850 -184977503 + AT_rich Low_complexity Low_complexity 1 40 0 236 319 181 29 chr1 57687136 57687274 -184977079 + MIR SINE MIR 34 192 -70 299 266 244 42 chr1 57687485 57687797 -184976556 - MLT1L LTR MaLR -207 408 34 735 244 39 13 chr1 57687800 57688030 -184976323 + L1MA9 LINE L1 6039 6274 -38 199 329 29 0 chr1 57688773 57688843 -184975510 - L2 LINE L2 -11 3261 3190 2009 130 17 7 chr1 57688870 57689170 -184975183 - AluSx SINE Alu -7 305 3 396 231 83 77 chr1 57689178 57689347 -184975006 + L2 LINE L2 3143 3312 -1 387 263 150 8 chr1 57689826 57689959 -184974394 + L2 LINE L2 3121 3272 0 394 318 130 37 chr1 57689975 57690484 -184973869 - L2 LINE L2 0 3313 2831 497 157 291 22 chr1 57690484 57690618 -184973735 + FAM SINE Alu 3 172 -3 394 318 130 37 chr1 57690618 57690674 -184973679 - L2 LINE L2 -482 2831 2782 963 300 228 13 chr1 57690684 57691440 -184972913 - L2 LINE L2 -1108 2206 1289 2110 123 0 20 chr1 57691716 57692018 -184972335 + AluSx SINE Alu 1 296 -16 209 194 0 0 chr1 57692086 57692122 -184972231 + A-rich Low_complexity Low_complexity 3 38 0 881 223 49 36 chr1 57692270 57692494 -184971859 - MIR SINE MIR -7 255 29 222 283 87 0 chr1 57692521 57692613 -184971740 - MIR SINE MIR -43 219 120 1930 148 0 13 chr1 57692767 57693070 -184971283 - AluJb SINE Alu -13 299 1 1561 173 43 20 chr1 57693362 57693539 -184970814 - AluJb SINE Alu -5 307 119 2399 91 0 13 chr1 57693539 57693848 -184970505 - AluSq SINE Alu -8 305 1 1561 173 43 20 chr1 57693848 57693970 -184970383 - AluJb SINE Alu -193 119 1 1018 184 174 20 chr1 57694215 57694340 -184970013 - L1MB4 LINE L1 0 6180 6076 2398 84 3 0 chr1 57694340 57694637 -184969716 - AluSq SINE Alu -15 298 1 1018 184 174 20 chr1 57694637 57694816 -184969537 - L1MB4 LINE L1 -104 6076 5829 1757 209 36 74 chr1 57694898 57695423 -184968930 - MLT2B3 LTR ERVL -49 505 1 1810 167 12 3 chr1 57695423 57695759 -184968594 - L1MB4 LINE L1 -341 5842 5504 1690 164 133 19 chr1 57695759 57696136 -184968217 + MSTA LTR MaLR 9 428 0 6861 202 40 29 chr1 57696136 57697555 -184966798 - L1MB4 LINE L1 -674 5506 4105 1715 179 3 10 chr1 57697555 57697852 -184966501 - AluJo SINE Alu -17 295 1 351 44 0 0 chr1 57697860 57697905 -184966448 + (TTG)n Simple_repeat Simple_repeat 2 46 0 1751 95 0 0 chr1 57697907 57698128 -184966225 - AluSg/x SINE Alu -7 305 85 6861 202 40 29 chr1 57698128 57698797 -184965556 - L1MB4 LINE L1 -2081 4099 3383 239 0 32 0 chr1 57699141 57699172 -184965181 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2132 130 3 0 chr1 57699190 57699498 -184964855 - AluY SINE Alu -2 309 1 628 107 0 0 chr1 57699983 57700067 -184964286 + AluJ/FLAM SINE Alu 3 86 -226 957 99 92 20 chr1 57700067 57700219 -184964134 + AluJo/FRAM SINE Alu 136 298 -14 24 0 0 0 chr1 57700449 57700473 -184963880 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr1 57701334 57701378 -184962975 + AT_rich Low_complexity Low_complexity 1 44 0 770 136 0 8 chr1 57701456 57701574 -184962779 + FLAM_C SINE Alu 1 117 -16 893 164 0 0 chr1 57701734 57701868 -184962485 + AluJo SINE Alu 1 134 -178 1699 181 35 0 chr1 57701868 57702156 -184962197 + AluJb SINE Alu 1 298 -14 2241 80 10 7 chr1 57702351 57702651 -184961702 + AluSp SINE Alu 1 301 -12 1481 167 151 0 chr1 57702660 57702912 -184961441 + AluSx SINE Alu 1 290 -12 280 111 0 0 chr1 57702949 57702994 -184961359 + (TTTTC)n Simple_repeat Simple_repeat 5 49 0 2215 116 0 10 chr1 57702994 57703416 -184960937 - AluSg SINE Alu 0 419 1 1456 132 9 26 chr1 57703417 57703644 -184960709 - AluSq SINE Alu -7 306 84 465 304 83 18 chr1 57704256 57704424 -184959929 - MIR SINE MIR -7 255 77 204 268 41 41 chr1 57705102 57705199 -184959154 - MIR3 SINE MIR -4 204 108 202 244 0 0 chr1 57705464 57705509 -184958844 + A-rich Low_complexity Low_complexity 2 46 0 1717 195 166 20 chr1 57705621 57706073 -184958280 + MLT2B1 LTR ERVL 3 520 0 429 238 0 48 chr1 57706113 57706239 -184958114 + L2 LINE L2 1099 1218 -2096 2037 139 0 0 chr1 57706240 57706552 -184957801 - AluSx SINE Alu 0 312 1 350 279 48 10 chr1 57706612 57706716 -184957637 - HAL1 LINE L1 -2002 505 398 2168 110 3 3 chr1 57707036 57707328 -184957025 - AluSx SINE Alu -20 292 1 302 207 0 3 chr1 57707330 57707408 -184956945 - L1MCa LINE L1 -3948 2478 2419 22 0 0 0 chr1 57707408 57707430 -184956923 + AT_rich Low_complexity Low_complexity 1 22 0 2307 108 0 0 chr1 57707437 57707734 -184956619 - AluSx SINE Alu -15 297 1 7325 138 81 37 chr1 57707754 57707923 -184956430 - L1MCa LINE L1 -4762 1664 1504 1972 132 0 3 chr1 57707923 57708211 -184956142 - AluSx SINE Alu -5 307 21 7325 138 81 37 chr1 57708211 57708482 -184955871 - L1MCa LINE L1 -4922 1504 1246 198 0 0 0 chr1 57708482 57708504 -184955849 + (TTA)n Simple_repeat Simple_repeat 2 23 0 7325 138 81 37 chr1 57708504 57709197 -184955156 - L1MCa LINE L1 -5180 1246 585 2228 108 0 3 chr1 57709197 57709492 -184954861 + AluSx SINE Alu 11 304 -8 7325 138 81 37 chr1 57709492 57709811 -184954542 - L1MCa LINE L1 -5841 585 282 1693 192 3 7 chr1 57709811 57710118 -184954235 - AluJb SINE Alu -6 306 1 1612 161 34 37 chr1 57710118 57710415 -184953938 - AluJo SINE Alu -15 297 1 7325 138 81 37 chr1 57710415 57710534 -184953819 - L1MCa LINE L1 -6143 283 19 312 27 0 0 chr1 57711278 57711315 -184953038 + (G)n Simple_repeat Simple_repeat 1 37 0 2008 112 32 4 chr1 57711639 57711945 -184952408 - AluSq SINE Alu 0 314 1 282 290 131 9 chr1 57711995 57712102 -184952251 - L2 LINE L2 -12 3301 3182 453 235 76 30 chr1 57712270 57712463 -184951890 + MER20B DNA MER1_type 15 219 0 1427 182 69 77 chr1 57712909 57713300 -184951053 - MLT1B LTR MaLR 0 390 3 26 88 0 0 chr1 57713307 57713375 -184950978 + AT_rich Low_complexity Low_complexity 1 68 0 1963 133 0 29 chr1 57713424 57713732 -184950621 + AluSx SINE Alu 1 299 -13 542 281 127 28 chr1 57713792 57714149 -184950204 - L1MC4a LINE L1 -321 5800 5456 2290 108 0 0 chr1 57714452 57714747 -184949606 + AluSx SINE Alu 1 295 -17 864 231 12 0 chr1 57715146 57715319 -184949034 - FAM SINE Alu 0 175 1 418 342 42 0 chr1 57715362 57715482 -184948871 + L2 LINE L2 3148 3272 0 496 360 71 22 chr1 57715489 57715811 -184948542 - L2 LINE L2 -530 2784 2447 194 304 141 0 chr1 57715839 57715931 -184948422 + MIR SINE MIR 3 107 -155 1151 179 37 5 chr1 57715931 57716221 -184948132 - MLT1A1 LTR MaLR 0 365 28 198 170 128 0 chr1 57716263 57716310 -184948043 + MIR SINE MIR 162 214 -48 236 258 30 0 chr1 57716326 57716392 -184947961 + MIR SINE MIR 84 151 -111 2245 110 0 22 chr1 57716707 57717025 -184947328 + AluSx SINE Alu 1 311 -1 2351 89 3 7 chr1 57720010 57720314 -184944039 - AluY SINE Alu -8 303 1 252 0 0 0 chr1 57720323 57720351 -184944002 + (A)n Simple_repeat Simple_repeat 1 28 0 22 56 0 0 chr1 57722186 57722222 -184942131 + AT_rich Low_complexity Low_complexity 1 36 0 547 155 0 0 chr1 57722949 57723046 -184941307 - L1MC1 LINE L1 -114 6219 6123 2158 100 21 3 chr1 57723052 57723342 -184941011 - AluSq SINE Alu -14 299 5 22 56 0 0 chr1 57723397 57723433 -184940920 + AT_rich Low_complexity Low_complexity 1 36 0 922 172 0 29 chr1 57723690 57723864 -184940489 - AluJb SINE Alu 0 312 144 946 211 69 103 chr1 57723866 57724179 -184940174 - L1MC4 LINE L1 -2 8040 7758 2283 64 0 4 chr1 57724179 57724480 -184939873 - AluY SINE Alu 0 300 1 946 211 69 103 chr1 57724480 57724814 -184939539 - L1MC4 LINE L1 -284 7758 7414 1296 161 5 0 chr1 57724824 57725017 -184939336 + AluJo SINE Alu 1 194 -118 218 219 0 62 chr1 57725099 57725163 -184939190 + L3 LINE CR1 1317 1376 -201 21 36 0 0 chr1 57725257 57725285 -184939068 + AT_rich Low_complexity Low_complexity 1 28 0 259 191 0 0 chr1 57725286 57725328 -184939025 + L2 LINE L2 3213 3254 -18 991 69 0 0 chr1 57725340 57725471 -184938882 - L1PA8 LINE L1 0 6172 6042 313 333 9 29 chr1 57725471 57725576 -184938777 + L3 LINE CR1 1431 1533 -44 2046 115 10 3 chr1 57725744 57726054 -184938299 - AluSq SINE Alu 0 312 1 1367 188 50 63 chr1 57726215 57726590 -184937763 - L1ME3 LINE L1 -87 6075 5704 1999 128 49 0 chr1 57726590 57726878 -184937475 - AluSx SINE Alu -10 302 1 1367 188 50 63 chr1 57726878 57726900 -184937453 - L1ME3 LINE L1 -458 5704 5683 2341 92 3 10 chr1 57726918 57727223 -184937130 - AluSq SINE Alu -10 303 1 2226 93 35 0 chr1 57727465 57727755 -184936598 + AluSg SINE Alu 1 300 -10 556 104 26 52 chr1 57727828 57727943 -184936410 - L1MB4 LINE L1 0 6180 6069 818 157 0 0 chr1 57729014 57729148 -184935205 - L1PA16 LINE L1 -9 6157 6024 203 0 0 36 chr1 57729148 57729176 -184935177 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2612 97 0 0 chr1 57729187 57729559 -184934794 - L1P4 LINE L1 -393 5773 5402 317 333 36 12 chr1 57729632 57729800 -184934553 + L2 LINE L2 2602 2773 -541 2324 109 0 0 chr1 57729820 57730122 -184934231 - AluSc SINE Alu -7 302 1 459 325 31 59 chr1 57730278 57730533 -184933820 + MIR SINE MIR 5 252 -10 182 308 67 58 chr1 57730546 57730650 -184933703 + L2 LINE L2 2948 3052 -220 199 329 0 14 chr1 57730799 57730869 -184933484 + L2 LINE L2 3188 3256 -16 320 200 63 63 chr1 57732181 57732276 -184932077 + MER94 DNA DNA 2 96 -38 24 0 0 0 chr1 57732536 57732560 -184931793 + AT_rich Low_complexity Low_complexity 1 24 0 2369 66 0 41 chr1 57732636 57732955 -184931398 - AluY SINE Alu -5 306 1 1845 153 0 17 chr1 57733392 57733680 -184930673 - AluSx SINE Alu -24 288 6 1766 180 0 10 chr1 57734011 57734311 -184930042 + AluJb SINE Alu 1 297 -15 31 26 0 0 chr1 57734734 57734772 -184929581 + AT_rich Low_complexity Low_complexity 1 38 0 2548 58 0 3 chr1 57735037 57735349 -184929004 - AluY SINE Alu 0 311 1 372 315 49 72 chr1 57736548 57736853 -184927500 + L1ME4a LINE L1 5618 5915 -206 358 336 0 0 chr1 57737249 57737362 -184926991 - L2 LINE L2 -541 2773 2661 1783 177 53 43 chr1 57737397 57737806 -184926547 + L1ME2 LINE L1 5765 6334 0 422 308 104 67 chr1 57737806 57738192 -184926161 - L2 LINE L2 -692 2622 2223 2495 58 0 0 chr1 57738340 57738634 -184925719 - AluY SINE Alu -16 295 2 513 267 24 36 chr1 57738891 57739056 -184925297 - MIR3 SINE MIR 0 208 46 4018 109 8 6 chr1 57739249 57739773 -184924580 + MER1A DNA MER1_type 3 527 0 2343 94 0 3 chr1 57739789 57740088 -184924265 + AluSq SINE Alu 1 298 -15 21 0 0 0 chr1 57740991 57741012 -184923341 + AT_rich Low_complexity Low_complexity 1 21 0 1843 122 0 74 chr1 57741012 57741323 -184923030 - AluSx SINE Alu -18 294 7 763 194 4 11 chr1 57741356 57741510 -184922843 + MSTC LTR MaLR 1 153 -243 1399 189 0 31 chr1 57741529 57741789 -184922564 + AluJo SINE Alu 37 288 -24 571 327 35 39 chr1 57741948 57742208 -184922145 - MIR SINE MIR -3 259 1 769 167 6 56 chr1 57742219 57742381 -184921972 - FRAM SINE Alu -23 153 1 2200 120 0 16 chr1 57742555 57742872 -184921481 + AluSx SINE Alu 1 312 0 273 284 24 94 chr1 57743123 57743250 -184921103 + MIR SINE MIR 27 144 -64 1302 185 185 76 chr1 57743970 57744327 -184920026 - MSTD LTR MaLR 0 396 1 375 285 92 44 chr1 57744715 57744964 -184919389 - MIR SINE MIR 0 262 2 2200 99 0 26 chr1 57745526 57745829 -184918524 + AluSx SINE Alu 15 309 -3 2010 158 0 19 chr1 57745915 57746231 -184918122 + AluSx SINE Alu 3 312 0 2428 82 10 0 chr1 57746382 57746685 -184917668 - AluSg SINE Alu -4 306 1 2440 69 7 3 chr1 57747013 57747319 -184917034 + AluY SINE Alu 1 307 -4 558 250 41 47 chr1 57748143 57748315 -184916038 + MIR SINE MIR 35 205 -57 1797 120 56 28 chr1 57748837 57749121 -184915232 + AluSx SINE Alu 1 292 -20 252 0 0 0 chr1 57749256 57749284 -184915069 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1486 151 32 42 chr1 57749286 57749571 -184914782 - AluJo SINE Alu -30 282 1 281 219 0 0 chr1 57750022 57750086 -184914267 - L1MC4 LINE L1 -1338 6704 6641 198 250 54 36 chr1 57750174 57750230 -184914123 + MIR SINE MIR 158 214 -48 1611 170 44 0 chr1 57750717 57751014 -184913339 - AluSx SINE Alu 0 309 1 2150 120 17 3 chr1 57751147 57751447 -184912906 - AluSx SINE Alu -8 304 1 227 272 48 24 chr1 57751448 57751573 -184912780 - L1M4 LINE L1 -6394 712 585 1818 123 35 0 chr1 57751628 57751889 -184912464 - AluSx SINE Alu -9 303 34 6744 159 45 11 chr1 57751889 57752731 -184911622 - L1 LINE L1 -814 5332 4428 2229 83 3 0 chr1 57752731 57753019 -184911334 - AluY SINE Alu -22 289 1 6744 159 45 11 chr1 57753019 57753476 -184910877 - L1 LINE L1 -1718 4428 3988 1265 282 81 86 chr1 57753520 57754189 -184910164 - L1M4 LINE L1 -6152 1057 1 2024 131 3 3 chr1 57754221 57754511 -184909842 + AluSg SINE Alu 1 290 -20 1910 236 113 73 chr1 57754520 57754767 -184909586 - L1MEc LINE L1 -4576 1820 1584 2214 128 0 0 chr1 57754767 57755071 -184909282 - AluSx SINE Alu -8 304 1 1910 236 113 73 chr1 57755071 57755203 -184909150 - L1MEc LINE L1 -4812 1584 1459 1863 174 0 6 chr1 57755203 57755514 -184908839 - AluJb SINE Alu -3 309 1 1910 236 113 73 chr1 57755514 57756210 -184908143 - L1MEc LINE L1 -4937 1459 701 873 271 141 94 chr1 57756210 57756379 -184907974 + L2 LINE L2 2377 2537 -777 2261 114 0 0 chr1 57756379 57756677 -184907676 + AluSx SINE Alu 1 298 -14 873 271 141 94 chr1 57756677 57756738 -184907615 + L2 LINE L2 2537 2594 -720 2076 144 0 0 chr1 57756738 57757036 -184907317 + AluSx SINE Alu 1 298 -14 873 271 141 94 chr1 57757036 57757292 -184907061 + L2 LINE L2 2594 2887 -427 386 212 171 20 chr1 57757327 57757473 -184906880 - L2 LINE L2 -13 3300 3133 25 31 0 0 chr1 57757901 57757933 -184906420 + AT_rich Low_complexity Low_complexity 1 32 0 2274 105 0 0 chr1 57758163 57758473 -184905880 - AluSx SINE Alu 0 310 1 228 273 0 0 chr1 57758494 57758549 -184905804 + T-rich Low_complexity Low_complexity 1 55 0 308 152 22 0 chr1 57758873 57758919 -184905434 - AluS SINE Alu -23 278 232 2125 106 41 0 chr1 57759069 57759361 -184904992 + AluSq SINE Alu 1 304 -9 7999 181 103 10 chr1 57759400 57761006 -184903347 + MER52A LTR ERV1 1 1755 0 1866 162 0 3 chr1 57761135 57761447 -184902906 - AluSx SINE Alu 0 311 1 2543 64 0 3 chr1 57761650 57761962 -184902391 - AluY SINE Alu 0 311 1 1863 174 13 19 chr1 57762082 57762393 -184901960 - AluJb SINE Alu -3 309 1 447 341 84 57 chr1 57762434 57762839 -184901514 + L2 LINE L2 2852 3267 -5 195 289 72 48 chr1 57762970 57763053 -184901300 + L2 LINE L2 3188 3272 0 2023 142 0 7 chr1 57763110 57763413 -184900940 + AluJo SINE Alu 6 306 -6 1477 162 15 33 chr1 57763885 57764156 -184900197 - AluJb SINE Alu -23 289 24 797 238 97 65 chr1 57764205 57764338 -184900015 - MIR SINE MIR -2 260 133 701 205 39 0 chr1 57764338 57764465 -184899888 + FLAM_A SINE Alu 1 132 -1 797 238 97 65 chr1 57764465 57764579 -184899774 - MIR SINE MIR -129 133 5 1593 194 19 19 chr1 57764766 57765076 -184899277 - AluJo SINE Alu -1 311 2 2372 103 0 0 chr1 57765172 57765474 -184898879 - AluSq SINE Alu -11 302 1 2110 158 0 0 chr1 57765689 57766000 -184898353 - AluSx SINE Alu -1 311 1 2076 156 7 94 chr1 57766731 57767155 -184897198 + MLT1B LTR MaLR 4 390 0 898 288 175 11 chr1 57767222 57767656 -184896697 + L1MEc LINE L1 193 697 -5699 * 7023 248 88 30 chr1 57767652 57768309 -184896044 + L1MEc LINE L1 972 1590 -4625 1604 139 0 20 chr1 57768309 57768446 -184895907 + AluSq SINE Alu 1 132 -181 1990 128 27 7 chr1 57768446 57768744 -184895609 + AluSx SINE Alu 2 305 -7 1604 139 0 20 chr1 57768744 57768857 -184895496 + AluSq SINE Alu 132 246 -67 7023 248 88 30 chr1 57768857 57769056 -184895297 + L1MEc LINE L1 1590 1776 -4439 1769 182 3 0 chr1 57769056 57769347 -184895006 + AluJo SINE Alu 1 292 -20 7023 248 88 30 chr1 57769347 57769793 -184894560 + L1MEc LINE L1 1776 2195 -4020 2406 99 3 0 chr1 57769793 57770105 -184894248 + AluSq SINE Alu 1 313 0 2206 91 10 3 chr1 57770115 57770412 -184893941 + AluSx SINE Alu 1 299 -13 7023 248 88 30 chr1 57770412 57771149 -184893204 + L1MEc LINE L1 2203 2896 -3319 1753 121 151 11 chr1 57771149 57771414 -184892939 + AluSx SINE Alu 1 302 0 7023 248 88 30 chr1 57771414 57772275 -184892078 + L1MEc LINE L1 2896 3706 -2509 348 24 0 0 chr1 57772275 57772316 -184892037 + (TG)n Simple_repeat Simple_repeat 2 42 0 7023 248 88 30 chr1 57772316 57772716 -184891637 + L1MEc LINE L1 3706 4081 -2134 1847 172 3 0 chr1 57772716 57773007 -184891346 + AluJb SINE Alu 1 292 -20 7023 248 88 30 chr1 57773007 57773243 -184891110 + L1MEc LINE L1 4081 4302 -1913 2251 119 7 0 chr1 57773243 57773553 -184890800 + AluSx SINE Alu 1 312 0 7023 248 88 30 chr1 57773553 57773628 -184890725 + L1MEc LINE L1 4302 4769 -1446 2291 106 0 13 chr1 57773634 57773945 -184890408 + AluSc SINE Alu 1 307 -2 2354 89 3 7 chr1 57774834 57775138 -184889215 - AluY SINE Alu -8 303 1 261 0 0 0 chr1 57775147 57775176 -184889177 + (A)n Simple_repeat Simple_repeat 1 29 0 22 56 0 0 chr1 57777011 57777047 -184887306 + AT_rich Low_complexity Low_complexity 1 36 0 594 155 0 0 chr1 57777774 57777871 -184886482 - L1MC1 LINE L1 -114 6219 6123 2363 88 14 0 chr1 57777877 57778171 -184886182 - AluSx SINE Alu -14 298 1 2440 69 7 3 chr1 57778499 57778805 -184885548 + AluY SINE Alu 1 307 -4 1106 76 0 0 chr1 57779508 57779640 -184884713 - AluY SINE Alu -179 132 1 1708 97 0 0 chr1 57779667 57779884 -184884469 + AluSg/x SINE Alu 86 302 -10 2136 115 0 26 chr1 57779892 57780196 -184884157 + AluSx SINE Alu 1 296 -16 2261 117 3 0 chr1 57780208 57780507 -184883846 + AluSx SINE Alu 1 300 -12 185 314 118 10 chr1 57780712 57780814 -184883539 + MIR3 SINE MIR 66 178 -30 2242 80 14 0 chr1 57782155 57782443 -184881910 - AluSp SINE Alu -21 292 1 1017 270 29 26 chr1 57782444 57782789 -184881564 + L1MEc LINE L1 4802 5147 -1068 343 215 170 25 chr1 57782795 57782954 -184881399 + L1MA10 LINE L1 5986 6334 0 562 253 117 7 chr1 57783741 57783895 -184880458 + L2 LINE L2 39 209 -3105 2103 250 117 46 chr1 57783896 57784444 -184879909 + L2 LINE L2 2092 2600 -713 2425 82 7 0 chr1 57784444 57784747 -184879606 - AluSg SINE Alu -5 305 1 2103 250 117 46 chr1 57784747 57784879 -184879474 + L2 LINE L2 2600 2721 -592 2473 74 0 0 chr1 57784879 57785175 -184879178 - AluY SINE Alu -15 296 1 2103 250 117 46 chr1 57785175 57785624 -184878729 + L2 LINE L2 2721 3313 0 1423 178 7 62 chr1 57785703 57785842 -184878511 + AluJo SINE Alu 1 115 -197 1701 172 0 31 chr1 57785842 57786162 -184878191 + AluSp SINE Alu 4 313 0 1423 178 7 62 chr1 57786162 57786326 -184878027 + AluJo SINE Alu 115 287 -25 212 0 36 0 chr1 57786342 57786370 -184877983 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 225 254 34 0 chr1 57786745 57786804 -184877549 + L2 LINE L2 3147 3207 -65 1061 149 177 40 chr1 57786923 57787068 -184877285 + AluSx SINE Alu 1 125 -196 1931 70 0 0 chr1 57787068 57787296 -184877057 + AluY SINE Alu 1 228 -83 1061 149 177 40 chr1 57787296 57787437 -184876916 + AluSx SINE Alu 125 321 0 939 204 12 0 chr1 57787444 57787606 -184876747 + FRAM SINE Alu 1 164 -2 230 269 0 0 chr1 57787768 57787820 -184876533 - L2 LINE L2 -8 3264 3213 764 265 27 0 chr1 57788437 57788622 -184875731 - MIR SINE MIR -20 242 53 1980 127 0 63 chr1 57788636 57788951 -184875402 + AluSq SINE Alu 1 295 -18 2353 98 3 0 chr1 57788951 57789248 -184875105 + AluSc SINE Alu 1 298 -11 2230 102 3 3 chr1 57789391 57789684 -184874669 + AluSg SINE Alu 1 293 -17 2106 124 3 13 chr1 57789761 57790075 -184874278 + AluSx SINE Alu 1 311 -1 191 354 62 0 chr1 57790302 57790367 -184873986 - L2 LINE L2 -670 2644 2576 1116 225 42 27 chr1 57791046 57791380 -184872973 + L1M4 LINE L1 4405 4743 -1403 * 1189 205 20 17 chr1 57791378 57791676 -184872677 + L1M4 LINE L1 4958 5256 -890 2437 74 7 0 chr1 57791693 57791992 -184872361 + AluY SINE Alu 1 301 -10 305 206 0 10 chr1 57792010 57792092 -184872261 + FRAM/FAM SINE Alu 13 61 -114 213 39 0 0 chr1 57792092 57792118 -184872235 + (CATAA)n Simple_repeat Simple_repeat 2 27 0 2179 107 10 0 chr1 57792161 57792451 -184871902 + AluSp SINE Alu 1 293 -20 2471 133 90 9 chr1 57792451 57792918 -184871435 - MER41B LTR ERV1 -130 505 1 2142 124 7 7 chr1 57792928 57793234 -184871119 - AluSx SINE Alu -6 306 1 842 225 0 31 chr1 57793395 57793586 -184870767 + AluJo SINE Alu 1 185 -127 211 209 59 150 chr1 57794017 57794170 -184870183 - MIR SINE MIR -58 204 66 1024 199 163 173 chr1 57795265 57795678 -184868675 - L1MC4a LINE L1 -1 8041 7625 1963 105 0 79 chr1 57795678 57795993 -184868360 - AluSx SINE Alu -22 290 1 1024 199 163 173 chr1 57795993 57796451 -184867902 - L1MC4a LINE L1 -417 7625 7164 873 186 0 0 chr1 57796451 57796619 -184867734 - FRAM SINE Alu 0 168 1 1024 199 163 173 chr1 57796619 57796883 -184867470 - L1MC4a LINE L1 -878 7164 6688 31 0 0 0 chr1 57797894 57797925 -184866428 + AT_rich Low_complexity Low_complexity 1 31 0 2179 110 13 3 chr1 57798199 57798499 -184865854 - AluSp SINE Alu -10 303 1 2057 131 0 3 chr1 57799034 57799331 -184865022 - AluSx SINE Alu -16 296 1 2336 109 0 0 chr1 57799888 57800191 -184864162 + AluSg SINE Alu 1 303 -7 25 0 0 0 chr1 57800819 57800844 -184863509 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr1 57801585 57801607 -184862746 + (TAGA)n Simple_repeat Simple_repeat 2 23 0 258 300 25 0 chr1 57802543 57802623 -184861730 + MIR SINE MIR 56 137 -71 439 335 47 11 chr1 57803349 57803540 -184860813 + MIR SINE MIR 5 202 -60 188 261 58 14 chr1 57804169 57804238 -184860115 - MIR3 SINE MIR -136 72 1 520 194 56 62 chr1 57805013 57805157 -184859196 - MIR SINE MIR -87 175 33 225 325 26 0 chr1 57806179 57806256 -184858097 + MIR SINE MIR 45 123 -85 364 215 54 11 chr1 57806340 57806433 -184857920 + MIR SINE MIR 22 118 -144 230 121 35 121 chr1 57807855 57807913 -184856440 + MIR3 SINE MIR 109 161 -47 195 139 0 0 chr1 57809740 57809776 -184854577 + (TCC)n Simple_repeat Simple_repeat 1 36 0 275 281 78 12 chr1 57810151 57810289 -184854064 - MIR SINE MIR -80 182 35 238 209 109 73 chr1 57811216 57811326 -184853027 - MIR SINE MIR -1 261 148 2636 36 0 3 chr1 57811327 57811630 -184852723 + AluY SINE Alu 1 302 -9 1198 175 32 4 chr1 57811638 57811884 -184852469 - L1MB3 LINE L1 0 6183 5931 2450 87 0 0 chr1 57811895 57812195 -184852158 - AluSx SINE Alu -12 300 1 685 199 12 37 chr1 57813158 57813319 -184851034 - MER3 DNA MER1_type -26 183 27 440 304 168 26 chr1 57813401 57813942 -184850411 - L2 LINE L2 -13 3259 2640 203 246 31 0 chr1 57813958 57814023 -184850330 + (CGGG)n Simple_repeat Simple_repeat 4 70 0 21 36 0 0 chr1 57814192 57814220 -184850133 + GC_rich Low_complexity Low_complexity 1 28 0 192 295 221 16 chr1 57815007 57815129 -184849224 - MIR SINE MIR -34 228 82 1469 138 35 4 chr1 57815226 57815458 -184848895 + AluJb SINE Alu 65 303 -9 3210 121 36 0 chr1 57815468 57815963 -184848390 - LTR38B LTR ERV1 -95 515 3 1918 161 3 3 chr1 57816090 57816394 -184847959 - AluJb SINE Alu -8 304 1 29 0 0 0 chr1 57816440 57816469 -184847884 + AT_rich Low_complexity Low_complexity 1 29 0 408 252 76 17 chr1 57816510 57816629 -184847724 + L2 LINE L2 3187 3312 -1 255 265 65 29 chr1 57817700 57817870 -184846483 - L1ME3A LINE L1 -213 5957 5782 421 182 46 0 chr1 57817877 57817983 -184846370 - L1ME3A LINE L1 -385 5736 5623 372 91 0 0 chr1 57817984 57818039 -184846314 - MLT2A2 LTR ERVL 0 453 399 249 254 0 0 chr1 57818043 57818114 -184846239 + (TG)n Simple_repeat Simple_repeat 2 72 0 660 250 0 0 chr1 57818219 57818584 -184845769 + C-rich Low_complexity Low_complexity 1 365 0 507 231 13 4 chr1 57818603 57818852 -184845501 + C-rich Low_complexity Low_complexity 1 251 0 291 114 0 0 chr1 57818975 57819019 -184845334 + (TA)n Simple_repeat Simple_repeat 1 44 0 2106 99 82 25 chr1 57819065 57819420 -184844933 + THE1C LTR MaLR 1 375 0 2197 136 10 0 chr1 57819647 57819956 -184844397 - AluSx SINE Alu 0 312 1 1063 263 96 18 chr1 57820046 57820503 -184843850 - L1MC4 LINE L1 -133 7909 7417 2088 112 24 17 chr1 57820503 57820799 -184843554 - AluSx SINE Alu -14 298 1 232 220 44 33 chr1 57820842 57820933 -184843420 - L1M4 LINE L1 -1487 4659 4568 776 187 30 0 chr1 57820961 57821095 -184843258 + FRAM SINE Alu 1 137 -39 189 0 0 0 chr1 57821095 57821116 -184843237 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2251 55 33 4 chr1 57821301 57821603 -184842750 - AluY SINE Alu 0 310 1 21 0 0 0 chr1 57821603 57821624 -184842729 + AT_rich Low_complexity Low_complexity 1 21 0 1336 153 44 0 chr1 57822044 57822247 -184842106 + AluJb SINE Alu 82 293 -19 344 254 55 45 chr1 57822658 57822768 -184841585 + MIR SINE MIR 31 141 -121 232 382 42 30 chr1 57823078 57823243 -184841110 + L2 LINE L2 3105 3271 -1 233 209 233 12 chr1 57823628 57823714 -184840639 + L2 LINE L2 3186 3290 -23 1189 78 0 0 chr1 57825194 57825336 -184839017 + AluSq/x SINE Alu 1 142 -170 2071 109 47 0 chr1 57825341 57825616 -184838737 + AluSx SINE Alu 5 292 -20 1493 117 0 5 chr1 57826122 57826328 -184838025 - AluSq SINE Alu -8 305 101 324 89 0 0 chr1 57826328 57826373 -184837980 - AluSq SINE Alu -255 45 1 2153 143 0 0 chr1 57826376 57826677 -184837676 - AluJb SINE Alu -9 303 3 313 284 61 75 chr1 57826690 57827049 -184837304 + L1MEd LINE L1 470 823 -5296 2305 100 3 0 chr1 57827169 57827470 -184836883 + AluY SINE Alu 1 302 -9 2091 119 7 14 chr1 57827482 57827775 -184836578 + AluSx SINE Alu 1 291 -21 2384 82 0 0 chr1 57827857 57828148 -184836205 + AluY SINE Alu 2 292 -19 402 316 20 7 chr1 57828150 57828302 -184836051 + HAL1 LINE L1 138 291 -2216 1980 75 0 8 chr1 57828346 57828599 -184835754 - AluSc SINE Alu -10 299 49 213 178 0 0 chr1 57828912 57828957 -184835396 + A-rich Low_complexity Low_complexity 1 45 0 2171 112 0 0 chr1 57829532 57829818 -184834535 + AluSc SINE Alu 23 308 -1 717 257 186 38 chr1 57829818 57830242 -184834111 + HAL1 LINE L1 449 935 -1572 2350 98 3 0 chr1 57830271 57830566 -184833787 + AluSx SINE Alu 1 296 -16 329 236 0 98 chr1 57830574 57830697 -184833656 + HAL1 LINE L1 1029 1139 -1368 419 254 73 52 chr1 57831072 57831239 -184833114 - MIR SINE MIR -59 203 38 219 290 0 16 chr1 57831412 57831474 -184832879 + L2 LINE L2 3206 3266 -6 2395 81 0 3 chr1 57831838 57832136 -184832217 - AluY SINE Alu -14 297 1 252 86 0 0 chr1 57832138 57832173 -184832180 - AluSp SINE Alu -132 171 137 369 311 15 61 chr1 57832327 57832430 -184831923 + L2 LINE L2 3146 3243 -29 2571 75 0 0 chr1 57832430 57832737 -184831616 - AluSp SINE Alu -6 307 1 369 311 15 61 chr1 57832737 57832765 -184831588 + L2 LINE L2 3243 3271 -1 1857 126 78 0 chr1 57832933 57833204 -184831149 - AluSx SINE Alu -18 294 3 227 378 42 17 chr1 57834205 57834324 -184830029 + L2 LINE L2 3170 3291 -22 189 307 88 44 chr1 57835324 57835438 -184828915 - MER5B DNA MER1_type -59 119 1 1580 165 49 25 chr1 57836542 57836827 -184827526 + AluJb SINE Alu 6 297 -15 1327 160 0 9 chr1 57836963 57837176 -184827177 + MER1B DNA MER1_type 129 339 0 2180 118 3 3 chr1 57837203 57837499 -184826854 - AluSx SINE Alu -16 296 1 756 265 55 5 chr1 57838494 57838713 -184825640 - MIR SINE MIR -19 243 14 184 208 0 83 chr1 57839428 57839476 -184824877 - L2 LINE L2 -8 3264 3221 406 247 0 0 chr1 57839610 57839703 -184824650 + L1 LINE L1 4128 4220 -1926 2349 85 3 7 chr1 57839809 57840115 -184824238 - AluY SINE Alu -6 305 1 1227 40 0 20 chr1 57841184 57841336 -184823017 + L1PA6 LINE L1 6006 6154 0 184 383 53 0 chr1 57841404 57841498 -184822855 + L3 LINE CR1 505 603 -974 255 306 0 0 chr1 57841540 57841602 -184822751 + MER5A DNA MER1_type 128 189 0 972 128 0 0 chr1 57841709 57841842 -184822511 + AluJo/FLAM SINE Alu 1 133 -169 2190 110 0 7 chr1 57841844 57842145 -184822208 + AluSx SINE Alu 1 299 -13 1160 197 62 5 chr1 57842232 57842440 -184821913 - MER58A DNA MER1_type -2 222 3 1534 262 109 17 chr1 57843308 57843818 -184820535 - MLT1G LTR MaLR -46 544 1 2307 102 0 0 chr1 57843886 57844181 -184820172 + AluSx SINE Alu 1 295 -17 1712 130 32 8 chr1 57844492 57844738 -184819615 - AluSx SINE Alu -60 252 1 989 184 74 0 chr1 57844878 57845041 -184819312 + FAM SINE Alu 1 175 0 249 244 0 0 chr1 57845431 57845476 -184818877 - L2 LINE L2 -4 3309 3265 351 311 45 23 chr1 57846344 57846476 -184817877 - MIR SINE MIR -108 154 20 349 217 48 0 chr1 57846476 57846559 -184817794 + L2 LINE L2 2404 2490 -824 2276 96 7 0 chr1 57846808 57847101 -184817252 + AluSp SINE Alu 1 295 -18 1924 148 0 10 chr1 57847369 57847667 -184816686 - AluSx SINE Alu -16 296 2 180 262 0 0 chr1 57847878 57847920 -184816433 - L2 LINE L2 -899 2415 2374 276 297 48 76 chr1 57848668 57848695 -184815658 - MIR SINE MIR -115 147 121 2215 118 0 16 chr1 57848695 57849009 -184815344 + AluSx SINE Alu 1 309 -3 2278 96 3 7 chr1 57849012 57849315 -184815038 + AluSp SINE Alu 1 302 -11 276 297 48 76 chr1 57849315 57849428 -184814925 - MIR SINE MIR -143 119 7 274 263 97 35 chr1 57849600 57849714 -184814639 + MIR3 SINE MIR 81 201 -7 275 319 0 33 chr1 57849740 57849831 -184814522 - MIR SINE MIR -116 146 59 351 253 65 25 chr1 57850048 57850208 -184814145 - MIR3 SINE MIR -70 138 1 2168 63 0 19 chr1 57850339 57850608 -184813745 - AluY SINE Alu -14 297 34 2280 92 7 3 chr1 57850609 57850902 -184813451 - AluSg SINE Alu -16 294 1 286 188 0 0 chr1 57850982 57851030 -184813323 - Alu SINE Alu -7 293 246 857 256 13 4 chr1 57851205 57851432 -184812921 - AluSg/x SINE Alu -19 293 65 628 139 0 9 chr1 57902513 57902621 -184761732 - AluSp/q SINE Alu -9 304 198 307 263 0 14 chr1 57902664 57902745 -184761608 + MIR SINE MIR 26 106 -102 2484 69 10 0 chr1 57902802 57903107 -184761246 - AluY SINE Alu -3 308 1 199 227 67 13 chr1 57903120 57903195 -184761158 + MIR SINE MIR 103 181 -81 2289 102 0 0 chr1 57903283 57903577 -184760776 - AluSx SINE Alu -18 294 1 256 289 82 7 chr1 57905743 57905878 -184758475 + MER112 DNA MER1_type 8 152 -108 2464 77 3 3 chr1 57906042 57906353 -184758000 + AluSp SINE Alu 1 311 -2 2239 60 39 0 chr1 57906737 57907022 -184757331 + AluY SINE Alu 1 296 -15 500 257 82 5 chr1 57907091 57907297 -184757056 + HAL1b LINE L1 481 702 -646 410 235 214 34 chr1 57907371 57907783 -184756570 + HAL1b LINE L1 846 1331 -17 451 272 23 47 chr1 57907864 57908121 -184756232 + L1ME4a LINE L1 5536 5786 -335 1873 128 62 9 chr1 57908592 57908913 -184755440 + MER2 DNA MER2_type 8 345 0 2212 113 7 3 chr1 57909609 57909910 -184754443 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 57910377 57910398 -184753955 + AT_rich Low_complexity Low_complexity 1 21 0 188 338 178 9 chr1 57911730 57911955 -184752398 + L2 LINE L2 2715 2977 -337 221 278 28 28 chr1 57912155 57912227 -184752126 + L2 LINE L2 3242 3313 0 519 337 56 61 chr1 57912533 57913049 -184751304 - L2 LINE L2 0 3272 2764 243 343 0 15 chr1 57913118 57913185 -184751168 + MIR SINE MIR 2 67 -195 305 320 96 116 chr1 57914070 57914414 -184749939 - L2 LINE L2 -77 3195 2859 266 269 75 21 chr1 57914469 57914562 -184749791 + L2 LINE L2 3169 3266 -6 626 228 47 0 chr1 57914857 57915028 -184749325 + L1MC5 LINE L1 7259 7437 -524 323 242 167 102 chr1 57915048 57915174 -184749179 + L1MC5 LINE L1 7478 7594 -367 2112 78 28 25 chr1 57915174 57915313 -184749040 + AluSc SINE Alu 1 138 -171 2351 98 3 0 chr1 57915313 57915618 -184748735 + AluSx SINE Alu 1 306 -6 2112 78 28 25 chr1 57915618 57915762 -184748591 + AluSc SINE Alu 138 285 -24 323 242 167 102 chr1 57915762 57916048 -184748305 + L1MC5 LINE L1 7594 7917 -44 2223 59 0 7 chr1 57916051 57916321 -184748032 - AluY SINE Alu -11 300 33 922 173 13 13 chr1 57916368 57916524 -184747829 + FAM SINE Alu 1 156 -19 23 33 0 0 chr1 57916524 57916554 -184747799 + AT_rich Low_complexity Low_complexity 1 30 0 2031 140 10 7 chr1 57916554 57916861 -184747492 - AluSx SINE Alu -4 308 1 231 217 0 0 chr1 57916874 57916934 -184747419 + (TATG)n Simple_repeat Simple_repeat 2 61 0 245 223 248 8 chr1 57917007 57917128 -184747225 + L1ME4a LINE L1 5972 6121 0 2272 103 6 6 chr1 57917239 57917551 -184746802 - AluSx SINE Alu 0 312 1 737 222 124 11 chr1 57917685 57917870 -184746483 - MIR SINE MIR -56 206 1 37 81 0 0 chr1 57918437 57918523 -184745830 + AT_rich Low_complexity Low_complexity 1 86 0 465 321 73 120 chr1 57918721 57918914 -184745439 - L2 LINE L2 0 3272 3071 1241 199 53 0 chr1 57918914 57919140 -184745213 + MER8 DNA MER2_type 1 238 -1 465 321 73 120 chr1 57919140 57919610 -184744743 - L2 LINE L2 -201 3071 2580 1867 169 0 0 chr1 57919610 57919894 -184744459 + AluJb SINE Alu 4 287 -25 465 321 73 120 chr1 57919894 57920045 -184744308 - L2 LINE L2 -692 2580 2423 1913 124 7 7 chr1 57920045 57920327 -184744026 - AluSx SINE Alu -18 294 13 465 321 73 120 chr1 57920327 57920617 -184743736 - L2 LINE L2 -849 2423 2225 430 275 148 11 chr1 57920617 57920799 -184743554 + MIR SINE MIR 2 208 -54 307 255 39 29 chr1 57921300 57921402 -184742951 + MIR SINE MIR 109 211 -51 1734 161 17 24 chr1 57921524 57921822 -184742531 + AluSx SINE Alu 1 296 -16 695 207 50 7 chr1 57922732 57922872 -184741481 + FRAM SINE Alu 1 146 -30 204 67 0 0 chr1 57922872 57922902 -184741451 + (TC)n Simple_repeat Simple_repeat 1 30 0 2475 84 0 0 chr1 57923172 57923480 -184740873 + AluSq SINE Alu 1 308 -5 318 310 96 16 chr1 57924143 57924330 -184740023 - MIR SINE MIR -42 220 19 207 296 136 0 chr1 57924524 57924612 -184739741 + L2 LINE L2 3153 3252 -20 2230 104 0 7 chr1 57924646 57924953 -184739400 + AluSg SINE Alu 6 310 0 189 147 0 0 chr1 57924966 57925000 -184739353 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 369 311 34 14 chr1 57925552 57925700 -184738653 - MIR SINE MIR -91 171 21 2222 132 0 0 chr1 57925756 57926060 -184738293 + AluSx SINE Alu 1 304 -8 930 195 0 0 chr1 57926060 57926219 -184738134 + FAM SINE Alu 1 42 -7 3552 161 41 9 chr1 57926557 57927258 -184737095 + L1MB7 LINE L1 5451 6174 -10 771 174 8 0 chr1 57927266 57927398 -184736955 - FLAM_C SINE Alu 0 133 1 198 0 0 0 chr1 57927402 57927424 -184736929 + (T)n Simple_repeat Simple_repeat 1 22 0 240 338 56 14 chr1 57927517 57927659 -184736694 + L2 LINE L2 2420 2567 -747 1351 189 65 9 chr1 57927685 57928023 -184736330 - Cheshire DNA MER1_type -2 2418 2062 332 330 90 88 chr1 57928108 57928251 -184736102 - L2 LINE L2 -1837 1477 1336 2113 87 23 58 chr1 57928251 57928561 -184735792 - AluSg SINE Alu -11 299 1 332 330 90 88 chr1 57928561 57928855 -184735498 - L2 LINE L2 -1978 1336 1036 2067 135 3 0 chr1 57928855 57929152 -184735201 + AluSx SINE Alu 1 298 -14 332 330 90 88 chr1 57929152 57929313 -184735040 - L2 LINE L2 -2278 1036 877 873 168 95 17 chr1 57929452 57929631 -184734722 - MER46A DNA MER2_type 0 236 44 252 226 59 49 chr1 57929673 57929775 -184734578 + L1MC4 LINE L1 5729 5831 -1977 2283 97 3 7 chr1 57929975 57930275 -184734078 + AluSp SINE Alu 6 304 -9 2347 68 7 10 chr1 57930275 57930570 -184733783 + AluSp SINE Alu 1 294 -19 904 183 6 6 chr1 57930585 57930754 -184733599 + FRAM SINE Alu 1 169 -7 2222 102 7 0 chr1 57930924 57931218 -184733135 + AluSc SINE Alu 1 296 -13 2324 139 25 5 chr1 57931479 57931875 -184732478 + MLT2A1 LTR ERVL 1 404 -40 343 273 23 0 chr1 57931895 57931983 -184732370 + L1MC4 LINE L1 6614 6703 -1339 325 314 0 0 chr1 57931904 57932036 -184732317 - L1MC4 LINE L1 -1340 6702 6614 * 249 65 87 22 chr1 57932043 57932089 -184732264 + MLT2A2 LTR ERVL 405 453 0 573 218 28 95 chr1 57932429 57932640 -184731713 - L2 LINE L2 -2 3311 3115 2319 93 0 10 chr1 57934136 57934449 -184729904 + AluSg SINE Alu 1 310 0 268 277 134 18 chr1 57934681 57934793 -184729560 + MIR3 SINE MIR 38 162 -46 250 263 105 98 chr1 57934980 57935113 -184729240 + L2 LINE L2 3133 3266 -6 2323 107 0 3 chr1 57935274 57935582 -184728771 + AluSx SINE Alu 1 307 -5 273 29 0 0 chr1 57936035 57936069 -184728284 + (CA)n Simple_repeat Simple_repeat 2 35 0 2070 137 0 3 chr1 57936275 57936568 -184727785 - AluSx SINE Alu -20 292 1 1627 171 37 9 chr1 57936578 57936905 -184727448 - L1MB3 LINE L1 -1 6182 5847 250 200 0 17 chr1 57937482 57937542 -184726811 + (TAA)n Simple_repeat Simple_repeat 2 60 0 215 313 201 8 chr1 57937609 57937743 -184726610 - MIR SINE MIR -79 183 24 2405 78 0 3 chr1 57937952 57938260 -184726093 + AluY SINE Alu 1 307 -4 1685 192 42 73 chr1 57938357 57938528 -184725825 + L1MC1 LINE L1 3234 3409 -2737 2332 81 0 3 chr1 57938528 57938825 -184725528 + AluSx SINE Alu 1 296 -16 1685 192 42 73 chr1 57938825 57939226 -184725127 + L1MC1 LINE L1 3409 3788 -2358 4337 187 53 11 chr1 57939260 57940069 -184724284 + MER21B LTR ERV1 7 849 -14 2125 103 17 7 chr1 57940071 57940373 -184723980 + AluSq SINE Alu 1 305 -8 5316 210 51 28 chr1 57940406 57941965 -184722388 + L1MC1 LINE L1 3853 5436 -754 1677 178 3 14 chr1 57941967 57942277 -184722076 + AluJb SINE Alu 1 307 0 262 75 25 0 chr1 57942285 57942325 -184722028 - MADE1 DNA Mariner 0 80 40 1581 153 47 18 chr1 57942325 57942599 -184721754 + AluJb SINE Alu 25 306 -6 314 121 0 17 chr1 57942603 57942661 -184721692 + (GGGGA)n Simple_repeat Simple_repeat 1 57 0 2191 142 21 5 chr1 57942701 57943088 -184721265 + L1MC1 LINE L1 5433 5825 -508 2291 88 3 28 chr1 57943090 57943407 -184720946 + AluSx SINE Alu 1 309 -3 23 0 0 0 chr1 57943446 57943469 -184720884 + AT_rich Low_complexity Low_complexity 1 23 0 2639 119 39 67 chr1 57943480 57944000 -184720353 + L1MC1 LINE L1 5814 6318 -15 2521 68 0 6 chr1 57944191 57944502 -184719851 - AluSc SINE Alu 0 309 1 523 229 0 0 chr1 57945547 57945665 -184718688 + FLAM_C SINE Alu 20 137 0 888 259 41 35 chr1 57945682 57945999 -184718354 + L1MC4a LINE L1 5507 5825 -1983 1765 39 5 0 chr1 57946063 57946269 -184718084 + AluY SINE Alu 90 296 -15 1955 168 0 0 chr1 57946275 57946572 -184717781 + AluJb SINE Alu 1 297 -15 1995 112 11 3 chr1 57946572 57946857 -184717496 + AluSg SINE Alu 1 287 -23 28 0 0 0 chr1 57946861 57946889 -184717464 + AT_rich Low_complexity Low_complexity 1 28 0 2118 78 0 0 chr1 57947193 57947479 -184716874 + AluSx SINE Alu 26 311 0 599 229 153 13 chr1 57948862 57949019 -184715334 + MER5A DNA MER1_type 9 187 -2 664 309 19 45 chr1 57949084 57949144 -184715209 + MIR SINE MIR 2 62 -200 2459 68 0 3 chr1 57949144 57949452 -184714901 - AluY SINE Alu -2 309 3 664 309 19 45 chr1 57949452 57949656 -184714697 + MIR SINE MIR 62 259 -3 1058 170 93 10 chr1 57950933 57951169 -184713184 + MIR SINE MIR 3 256 -6 2375 80 0 10 chr1 57951211 57951522 -184712831 - AluSc SINE Alu -1 308 1 389 334 90 47 chr1 57952227 57952571 -184711782 + L2 LINE L2 2183 2541 -773 1034 188 0 0 chr1 57952843 57953013 -184711340 - FAM SINE Alu -5 170 1 1289 135 46 155 chr1 57953213 57953329 -184711024 + AluJo SINE Alu 19 146 -166 1708 171 17 27 chr1 57953329 57953628 -184710725 + AluJb SINE Alu 1 296 -16 216 0 0 0 chr1 57953628 57953652 -184710701 + (TA)n Simple_repeat Simple_repeat 2 25 0 2023 120 14 0 chr1 57953652 57953935 -184710418 - AluSq SINE Alu -26 287 1 1289 135 46 155 chr1 57953935 57954120 -184710233 + AluJo SINE Alu 143 289 -23 23 0 0 0 chr1 57954136 57954159 -184710194 + AT_rich Low_complexity Low_complexity 1 23 0 1183 261 176 27 chr1 57954266 57955092 -184709261 + L2 LINE L2 2345 3312 -1 180 326 23 12 chr1 57955862 57955948 -184708405 + L2 LINE L2 3185 3271 -1 5267 151 48 32 chr1 57956038 57956577 -184707776 + L1MC3 LINE L1 6031 6595 -1190 2334 76 0 3 chr1 57956577 57956879 -184707474 + AluY SINE Alu 1 301 -10 5267 151 48 32 chr1 57956879 57957339 -184707014 + L1MC3 LINE L1 6595 7046 -739 1277 195 47 30 chr1 57957345 57957752 -184706601 + L1ME1 LINE L1 5586 6018 -148 2374 98 0 0 chr1 57957977 57958283 -184706070 - AluSg SINE Alu -4 306 1 909 179 55 25 chr1 57958488 57958689 -184705664 + MER3 DNA MER1_type 2 208 -1 211 370 0 0 chr1 57958739 57958793 -184705560 + L2 LINE L2 3206 3259 -13 184 162 15 15 chr1 57959513 57959581 -184704772 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 1018 220 56 50 chr1 57960231 57960572 -184703781 + L1MA10 LINE L1 5991 6333 -1 2011 136 0 3 chr1 57960893 57961180 -184703173 + AluJb SINE Alu 1 286 -26 2309 105 0 0 chr1 57962815 57963111 -184701242 - AluSx SINE Alu -14 298 3 22 56 0 0 chr1 57964121 57964157 -184700196 + AT_rich Low_complexity Low_complexity 1 36 0 1722 164 23 13 chr1 57964258 57964557 -184699796 + AluJo SINE Alu 1 302 -10 307 298 196 30 chr1 57964889 57965057 -184699296 - MIR3 SINE MIR -1 207 12 652 182 20 121 chr1 57965057 57965255 -184699098 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr1 57965280 57965302 -184699051 + AT_rich Low_complexity Low_complexity 1 22 0 241 211 35 0 chr1 57965330 57965387 -184698966 - L2 LINE L2 0 3272 3214 277 268 65 25 chr1 57965411 57965571 -184698782 - MIR SINE MIR -11 251 2 827 262 30 50 chr1 57965777 57966079 -184698274 - L2 LINE L2 -3 3310 3015 4015 237 85 45 chr1 57966193 57966681 -184697672 - L2 LINE L2 -520 2794 2327 2528 62 0 3 chr1 57966681 57966988 -184697365 + AluY SINE Alu 1 306 -5 4015 237 85 45 chr1 57966988 57967763 -184696590 - L2 LINE L2 -987 2327 1480 294 343 111 0 chr1 57967914 57968022 -184696331 + L2 LINE L2 3153 3272 0 300 180 210 30 chr1 57968203 57968303 -184696050 - MIR3 SINE MIR -4 204 87 26 0 0 0 chr1 57968636 57968662 -184695691 + AT_rich Low_complexity Low_complexity 1 26 0 429 304 42 90 chr1 57969309 57969416 -184694937 - L1MC4a LINE L1 -1880 5928 5817 1476 153 56 42 chr1 57969416 57969704 -184694649 - AluJb SINE Alu -20 292 1 429 304 42 90 chr1 57969704 57970243 -184694110 - L1MC4a LINE L1 -1991 5817 5313 333 242 0 0 chr1 57970426 57970492 -184693861 - MER2 DNA MER2_type 0 345 280 1968 114 4 0 chr1 57970497 57970761 -184693592 + AluSq SINE Alu 1 265 -48 26 74 0 0 chr1 57970768 57970822 -184693531 + AT_rich Low_complexity Low_complexity 1 54 0 444 129 118 54 chr1 57970860 57970953 -184693400 + FLAM_A SINE Alu 23 121 -21 195 42 0 0 chr1 57971008 57971032 -184693321 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1021 161 0 0 chr1 57971036 57971191 -184693162 + FRAM SINE Alu 1 155 -11 21 82 0 0 chr1 57971191 57971240 -184693113 + AT_rich Low_complexity Low_complexity 1 49 0 1025 168 29 24 chr1 57971245 57971454 -184692899 - MER2 DNA MER2_type -134 211 2 24 53 0 0 chr1 57971535 57971573 -184692780 + AT_rich Low_complexity Low_complexity 1 38 0 314 244 24 0 chr1 57971661 57971743 -184692610 - L1MC4a LINE L1 -1320 4826 4743 866 299 183 0 chr1 57971744 57972105 -184692248 + L2 LINE L2 2887 3313 0 638 315 114 18 chr1 57972146 57972829 -184691524 - L1MC4a LINE L1 -1701 4445 3697 205 271 0 21 chr1 57974075 57974123 -184690230 - MIR SINE MIR -72 136 90 1623 146 37 27 chr1 57974132 57974427 -184689926 + AluJb SINE Alu 1 298 -14 682 180 7 22 chr1 57974592 57974731 -184689622 + FLAM_C SINE Alu 3 139 -4 535 173 116 64 chr1 57974757 57974930 -184689423 - L2 LINE L2 -2 3311 3130 353 313 20 10 chr1 57974927 57975026 -184689327 - L2 LINE L2 -287 3026 2927 * 186 392 62 0 chr1 57976730 57976827 -184687526 + MIR3 SINE MIR 85 187 -21 1761 106 0 20 chr1 57977119 57977364 -184686989 - AluJb SINE Alu -12 300 61 2233 98 7 0 chr1 57978376 57978672 -184685681 + AluSg1 SINE Alu 1 298 -11 181 333 56 22 chr1 57978752 57978842 -184685511 - L2 LINE L2 0 3313 3221 657 306 36 32 chr1 57979388 57979636 -184684717 - MIR SINE MIR -1 261 13 2084 133 3 0 chr1 57980049 57980351 -184684002 - AluSq SINE Alu -10 303 1 204 125 0 0 chr1 57980542 57980574 -184683779 + (A)n Simple_repeat Simple_repeat 1 32 0 1373 190 40 33 chr1 57980771 57981071 -184683282 - AluJo SINE Alu -10 302 1 2158 120 0 0 chr1 57981378 57981678 -184682675 + AluSx SINE Alu 1 300 -12 391 232 286 38 chr1 57981934 57982119 -184682234 - MIR SINE MIR -30 232 2 2307 63 7 10 chr1 57985209 57985512 -184678841 - AluY SINE Alu -9 302 1 1897 162 0 0 chr1 57985573 57985870 -184678483 + AluSx SINE Alu 1 297 -15 513 0 0 0 chr1 57985871 57985928 -184678425 + (TA)n Simple_repeat Simple_repeat 2 58 0 867 153 18 83 chr1 57985928 57986085 -184678268 + L1MB3 LINE L1 4611 4777 -1369 1870 167 3 0 chr1 57986085 57986391 -184677962 + AluSx SINE Alu 1 307 -5 867 153 18 83 chr1 57986391 57986422 -184677931 + L1MB3 LINE L1 4777 4784 -1362 1917 156 10 0 chr1 57986422 57986723 -184677630 + AluJb SINE Alu 1 304 -8 867 153 18 83 chr1 57986723 57986762 -184677591 + L1MB3 LINE L1 4784 4824 -1322 901 85 42 0 chr1 57986762 57986880 -184677473 + AluSq/x SINE Alu 1 123 -189 319 196 0 0 chr1 57986883 57986939 -184677414 - L1MC4 LINE L1 -1334 6708 6653 1130 116 6 24 chr1 57986939 57987103 -184677250 + AluSg/x SINE Alu 136 296 -16 5004 165 18 41 chr1 57987104 57987320 -184677033 + L1MB3 LINE L1 4815 5034 -1149 1325 185 80 18 chr1 57987320 57987449 -184676904 + AluJo SINE Alu 1 120 -192 2256 111 7 3 chr1 57987449 57987755 -184676598 + AluSq SINE Alu 1 307 -6 1325 185 80 18 chr1 57987755 57987911 -184676442 + AluJo SINE Alu 120 304 -8 5004 165 18 41 chr1 57987911 57989109 -184675244 + L1MB3 LINE L1 5034 6182 -1 1852 147 3 32 chr1 57989578 57989891 -184674462 - AluSx SINE Alu -7 305 2 645 271 96 18 chr1 57989928 57990157 -184674196 - MIR SINE MIR -3 259 13 416 268 122 0 chr1 57990166 57990281 -184674072 - L2 LINE L2 -2 3311 3139 28 29 0 0 chr1 57990281 57990316 -184674037 + AT_rich Low_complexity Low_complexity 1 35 0 416 268 122 0 chr1 57990316 57990330 -184674023 - L2 LINE L2 -174 3139 3128 207 329 123 18 chr1 57990371 57990541 -184673812 + L2 LINE L2 1734 1921 -1393 632 198 0 0 chr1 57990553 57990669 -184673684 - FLAM_A SINE Alu -9 133 18 377 309 201 7 chr1 57990730 57991028 -184673325 + L2 LINE L2 1991 2346 -968 206 275 83 96 chr1 57991108 57991318 -184673035 + L2 LINE L2 2503 2711 -603 2172 126 0 0 chr1 57991318 57991611 -184672742 + AluSg SINE Alu 1 293 -17 206 275 83 96 chr1 57991611 57991640 -184672713 + L2 LINE L2 2711 2739 -575 2438 175 31 2 chr1 57991672 57992152 -184672201 - L1MB2 LINE L1 -127 6044 5551 299 222 0 14 chr1 57992152 57992224 -184672129 - L1MB2 LINE L1 -2055 4091 4021 390 149 40 27 chr1 57992228 57992302 -184672051 - FLAM SINE Alu 0 133 59 828 236 38 65 chr1 57992330 57992387 -184671966 - L1MB2 LINE L1 -2133 4013 3956 2259 119 0 0 chr1 57992387 57992690 -184671663 - AluSx SINE Alu -9 303 1 828 236 38 65 chr1 57992690 57992799 -184671554 - L1MB2 LINE L1 -2190 3956 3846 2004 112 66 0 chr1 57992799 57993086 -184671267 - AluSx SINE Alu -6 306 1 828 236 38 65 chr1 57993086 57993257 -184671096 - L1MB2 LINE L1 -2300 3846 3684 340 219 26 53 chr1 57993293 57993407 -184670946 - L1MB2 LINE L1 -2449 3697 3587 2508 273 111 9 chr1 57993439 57994516 -184669837 - L1MEc LINE L1 -5181 1215 30 671 112 43 2 chr1 57994577 57994759 -184669594 + MER46A DNA MER2_type 1 236 0 1852 184 0 7 chr1 57994777 57995081 -184669272 - AluSx SINE Alu -10 302 1 1395 123 26 0 chr1 57995118 57995313 -184669040 + AluSg/x SINE Alu 99 298 -12 239 277 78 126 chr1 57995447 57995718 -184668635 - L2 LINE L2 -9 3263 3006 515 348 96 51 chr1 57995897 57996325 -184668028 + L2 LINE L2 2826 3272 0 21 36 0 0 chr1 57996528 57996556 -184667797 + AT_rich Low_complexity Low_complexity 1 28 0 1872 162 3 10 chr1 57996999 57997313 -184667040 + AluSx SINE Alu 1 312 0 310 270 63 25 chr1 57997391 57997550 -184666803 + MARNA DNA Mariner 340 504 -82 457 371 34 13 chr1 57997618 57997855 -184666498 - MIR SINE MIR 0 262 21 200 200 278 0 chr1 57998120 57998210 -184666143 - MIR SINE MIR -75 187 73 1106 278 195 11 chr1 57998335 57998964 -184665389 - L2 LINE L2 -5 3308 2538 195 200 100 17 chr1 57998965 57999025 -184665328 - L2 LINE L2 -1077 2237 2173 953 230 59 27 chr1 57999260 57999482 -184664871 - MIR SINE MIR -25 237 9 1172 129 0 0 chr1 57999944 58000107 -184664246 + AluSg/x SINE Alu 136 298 -14 1288 146 165 11 chr1 58000122 58000382 -184663971 + AluJb SINE Alu 3 302 0 21 0 0 0 chr1 58000414 58000435 -184663918 + AT_rich Low_complexity Low_complexity 1 21 0 375 270 54 0 chr1 58000838 58000949 -184663404 + MIR SINE MIR 132 248 -14 2199 135 0 0 chr1 58001127 58001431 -184662922 + AluSx SINE Alu 1 304 -8 2261 117 0 0 chr1 58001746 58002046 -184662307 - AluSx SINE Alu -12 300 1 212 344 0 0 chr1 58002144 58002208 -184662145 + L2 LINE L2 3249 3312 -1 396 302 52 0 chr1 58002235 58002351 -184662002 + L2 LINE L2 3151 3272 0 646 208 39 32 chr1 58002417 58002571 -184661782 - MER58A DNA MER1_type -31 193 39 188 214 18 0 chr1 58002692 58002748 -184661605 + GA-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chr1 58003063 58003084 -184661269 + AT_rich Low_complexity Low_complexity 1 21 0 280 311 87 19 chr1 58003531 58003634 -184660719 + L2 LINE L2 3137 3246 -26 256 294 106 0 chr1 58003618 58003703 -184660650 + L2 LINE L2 2660 2753 -561 * 348 250 175 0 chr1 58003788 58003908 -184660445 - L2 LINE L2 -168 3145 3005 209 409 157 12 chr1 58003988 58004313 -184660040 + L2 LINE L2 2901 3272 0 182 279 82 68 chr1 58004493 58004640 -184659713 + L3 LINE CR1 1402 1550 -27 778 134 40 0 chr1 58005074 58005223 -184659130 + L1MB5 LINE L1 5655 5809 -365 1569 174 77 16 chr1 58005229 58005592 -184658761 - MLT1B LTR MaLR -5 385 1 1772 148 50 3 chr1 58005593 58005910 -184658443 + L1MB5 LINE L1 5807 6138 -36 2594 171 28 0 chr1 58005941 58006450 -184657903 + L1MB7 LINE L1 5593 6115 -69 2359 84 3 0 chr1 58006479 58006777 -184657576 - AluSq SINE Alu -14 299 1 21 0 0 0 chr1 58006789 58006810 -184657543 + AT_rich Low_complexity Low_complexity 1 21 0 1005 99 0 0 chr1 58006866 58006997 -184657356 + AluSg/x SINE Alu 160 290 -20 939 265 51 55 chr1 58007001 58007387 -184656966 - L2 LINE L2 -304 3009 2622 752 281 12 6 chr1 58007392 58007563 -184656790 + MER5A DNA MER1_type 12 183 -6 700 311 28 50 chr1 58007574 58007759 -184656594 + L2 LINE L2 2962 3137 -176 2378 89 0 3 chr1 58007759 58008062 -184656291 - AluSq SINE Alu -11 302 1 700 311 28 50 chr1 58008062 58008236 -184656117 + L2 LINE L2 3137 3313 0 2045 151 7 0 chr1 58008351 58008649 -184655704 + AluSx SINE Alu 1 300 -12 2222 110 0 3 chr1 58008652 58008943 -184655410 + AluSg SINE Alu 1 290 -20 495 300 89 53 chr1 58009328 58009575 -184654778 - MIR SINE MIR -1 261 6 2126 107 10 0 chr1 58009613 58009903 -184654450 + AluSq SINE Alu 1 293 -20 602 139 19 9 chr1 58009956 58010064 -184654289 - AluSg/x SINE Alu -7 305 197 495 300 89 53 chr1 58010567 58010814 -184653539 - MIR SINE MIR -1 261 6 1795 139 46 17 chr1 58010852 58011154 -184653199 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr1 58011511 58011546 -184652807 + AT_rich Low_complexity Low_complexity 1 35 0 461 319 62 73 chr1 58011661 58011781 -184652572 + L2 LINE L2 2622 2742 -572 2187 64 42 3 chr1 58011781 58012064 -184652289 + AluY SINE Alu 1 294 -17 2052 124 11 0 chr1 58012070 58012353 -184652000 + AluSg SINE Alu 18 303 -7 461 319 62 73 chr1 58012353 58012498 -184651855 + L2 LINE L2 2747 2891 -423 2195 107 3 14 chr1 58014270 58014559 -184649794 + AluSq SINE Alu 1 286 -27 2273 95 0 20 chr1 58014793 58015099 -184649254 + AluSg SINE Alu 1 300 -10 1426 178 7 25 chr1 58015138 58015424 -184648929 + L1MC1 LINE L1 6043 6323 -10 2177 104 0 7 chr1 58015424 58015736 -184648617 + AluSg SINE Alu 1 310 0 1974 143 17 0 chr1 58015741 58016035 -184648318 + AluJb SINE Alu 1 299 -13 1439 163 13 4 chr1 58016313 58016540 -184647813 - AluJo SINE Alu -83 229 1 37 0 0 0 chr1 58016706 58016743 -184647610 + AT_rich Low_complexity Low_complexity 1 37 0 1760 189 0 10 chr1 58017364 58017665 -184646688 - AluJb SINE Alu -9 303 6 695 67 0 0 chr1 58017718 58017807 -184646546 + AluSg/x SINE Alu 215 303 -9 1382 83 29 5 chr1 58017868 58018072 -184646281 - L1MA1 LINE L1 0 6302 6094 1735 187 0 3 chr1 58018248 58018547 -184645806 + AluJb SINE Alu 1 298 -14 634 174 0 0 chr1 58018755 58018864 -184645489 - FRAM SINE Alu -14 162 54 423 343 22 8 chr1 58018990 58019124 -184645229 + L2 LINE L2 3133 3268 -4 1931 104 60 0 chr1 58019413 58019681 -184644672 - AluSc SINE Alu -1 308 25 376 229 216 14 chr1 58019702 58019843 -184644510 - HAL1 LINE L1 -33 2474 2363 1553 146 64 24 chr1 58019843 58020138 -184644215 - AluJb SINE Alu -5 307 1 376 229 216 14 chr1 58020138 58020214 -184644139 - HAL1 LINE L1 -144 2363 2213 303 244 26 0 chr1 58020354 58020432 -184643921 + MLT1J2 LTR MaLR 39 118 -332 390 239 33 0 chr1 58020568 58020660 -184643693 - MER5A DNA MER1_type -83 106 12 644 248 158 32 chr1 58020833 58021212 -184643141 - HAL1 LINE L1 -408 2099 1673 1835 162 17 10 chr1 58021213 58021509 -184642844 + AluSx SINE Alu 1 298 -14 31 26 0 0 chr1 58021874 58021912 -184642441 + AT_rich Low_complexity Low_complexity 1 38 0 1195 242 105 59 chr1 58022011 58022097 -184642256 - HAL1 LINE L1 -836 1671 1590 1780 174 0 32 chr1 58022097 58022407 -184641946 + AluJb SINE Alu 1 300 -12 1195 242 105 59 chr1 58022407 58023036 -184641317 - HAL1 LINE L1 -917 1590 923 2707 217 118 43 chr1 58023075 58024097 -184640256 + L1MB3 LINE L1 1236 2180 -4202 2125 102 18 3 chr1 58024097 58024382 -184639971 + AluSq SINE Alu 1 289 -24 2707 217 118 43 chr1 58024382 58024410 -184639943 + L1MB3 LINE L1 2180 2204 -4178 2203 87 19 16 chr1 58024410 58024722 -184639631 + AluSq SINE Alu 1 313 0 2707 217 118 43 chr1 58024722 58025157 -184639196 + L1MB3 LINE L1 2204 2605 -3777 2005 121 14 0 chr1 58025157 58025469 -184638884 + AluSq SINE Alu 1 316 0 2707 217 118 43 chr1 58025469 58025480 -184638873 + L1MB3 LINE L1 2605 2614 -3768 2030 154 0 0 chr1 58025480 58025779 -184638574 + AluSx SINE Alu 1 299 -13 2707 217 118 43 chr1 58025779 58025859 -184638494 + L1MB3 LINE L1 2614 2946 -3436 1732 166 54 0 chr1 58025907 58026203 -184638150 + AluJo SINE Alu 1 312 0 866 193 45 0 chr1 58026229 58026405 -184637948 + MER45B DNA AcHobo 431 614 -426 255 269 0 0 chr1 58026407 58026459 -184637894 + AluJ/monomer SINE Alu 2 53 -247 * 277 187 0 67 chr1 58026441 58026516 -184637837 - AluJ/FLAM SINE Alu -224 78 9 1959 110 9 60 chr1 58027136 58027455 -184636898 + AluSx SINE Alu 2 304 -8 2323 69 0 23 chr1 58027457 58027760 -184636593 + AluY SINE Alu 1 296 -15 2087 119 7 7 chr1 58027761 58028071 -184636282 + AluSg SINE Alu 1 310 0 638 177 21 14 chr1 58028297 58028438 -184635915 - Charlie1 DNA MER1_type 0 2761 2620 2146 132 0 10 chr1 58028450 58028760 -184635593 + AluSx SINE Alu 1 307 -5 2325 100 3 0 chr1 58028777 58029078 -184635275 + AluSx SINE Alu 1 302 -10 983 189 16 4 chr1 58029078 58029321 -184635032 + L1MB7 LINE L1 4959 5204 -942 * 2763 176 39 0 chr1 58029315 58029850 -184634503 + L1MB3 LINE L1 5572 6127 -56 5622 179 37 52 chr1 58029886 58030270 -184634083 + L1MB3 LINE L1 3951 4340 -2079 2240 74 25 0 chr1 58030270 58030581 -184633772 - AluSp SINE Alu 0 313 1 5622 179 37 52 chr1 58030581 58031010 -184633343 + L1MB3 LINE L1 4340 4774 -1645 2372 96 0 0 chr1 58031010 58031311 -184633042 - AluSx SINE Alu -11 301 1 5622 179 37 52 chr1 58031311 58031534 -184632819 + L1MB3 LINE L1 4774 4999 -1420 2355 75 3 3 chr1 58031534 58031829 -184632524 + AluY SINE Alu 1 295 -16 5622 179 37 52 chr1 58031829 58032302 -184632051 + L1MB3 LINE L1 4999 5478 -941 1810 174 3 3 chr1 58032302 58032612 -184631741 + AluJb SINE Alu 1 310 -2 2045 143 0 10 chr1 58032621 58032922 -184631431 + AluSx SINE Alu 1 298 -14 5622 179 37 52 chr1 58032922 58033367 -184630986 + L1MB3 LINE L1 5486 5936 -483 1721 159 3 55 chr1 58033367 58033693 -184630660 + AluJb SINE Alu 1 309 -3 5622 179 37 52 chr1 58033693 58034238 -184630115 + L1MB3 LINE L1 5936 6412 -7 3662 169 90 11 chr1 58034315 58034379 -184629974 + L1MB7 LINE L1 5195 5253 -931 1753 130 6 86 chr1 58034379 58034694 -184629659 + AluJb SINE Alu 3 292 -20 3662 169 90 11 chr1 58034694 58035544 -184628809 + L1MB7 LINE L1 5253 6164 -20 356 199 199 26 chr1 58035558 58035709 -184628644 - Charlie1 DNA MER1_type -2541 220 44 33 0 0 0 chr1 58035812 58035845 -184628508 + AT_rich Low_complexity Low_complexity 1 33 0 198 243 58 78 chr1 58035976 58036079 -184628274 - MIR SINE MIR -161 101 1 * 577 318 92 0 chr1 58035987 58036226 -184628127 + MIR SINE MIR 1 261 -1 271 293 12 24 chr1 58036684 58036766 -184627587 + MIR3 SINE MIR 12 92 -116 223 271 61 93 chr1 58036797 58037011 -184627342 + L2 LINE L2 2806 3012 -260 337 270 128 46 chr1 58037214 58037395 -184626958 + MIR SINE MIR 64 256 -6 1765 152 33 20 chr1 58038024 58038326 -184626027 - AluJo SINE Alu -6 306 1 27 0 0 0 chr1 58038948 58038975 -184625378 + AT_rich Low_complexity Low_complexity 1 27 0 231 36 0 0 chr1 58039214 58039242 -184625111 + (CA)n Simple_repeat Simple_repeat 1 28 0 198 103 0 0 chr1 58040532 58040561 -184623792 + (CCG)n Simple_repeat Simple_repeat 3 31 0 276 200 0 0 chr1 58040628 58040688 -184623665 + G-rich Low_complexity Low_complexity 2 61 0 188 229 29 0 chr1 58042004 58042039 -184622314 - MIR SINE MIR -61 147 112 211 283 177 18 chr1 58042082 58042195 -184622158 + MIR SINE MIR 9 139 -123 185 281 73 61 chr1 58043079 58043161 -184621192 - MIR SINE MIR -130 132 50 2036 100 0 0 chr1 58043503 58043773 -184620580 + AluSx SINE Alu 26 295 -17 213 314 29 19 chr1 58043809 58043914 -184620439 - L2 LINE L2 -500 2814 2709 320 247 13 26 chr1 58044051 58044128 -184620225 + L2 LINE L2 3187 3262 -10 182 312 134 32 chr1 58044638 58044795 -184619558 - L2 LINE L2 -463 2851 2679 * 266 377 138 0 chr1 58044773 58044932 -184619421 - L3 LINE CR1 -96 1481 1301 1374 159 19 87 chr1 58044961 58045089 -184619264 + AluJb SINE Alu 1 136 -176 1717 154 10 10 chr1 58045089 58045381 -184618972 + AluSx SINE Alu 1 292 -20 1374 159 19 87 chr1 58045381 58045573 -184618780 + AluJb SINE Alu 136 299 -13 2280 107 0 0 chr1 58045623 58045932 -184618421 - AluSx SINE Alu -3 309 1 1418 150 4 4 chr1 58045934 58046161 -184618192 - AluJb SINE Alu -12 300 74 1606 197 79 0 chr1 58046337 58046677 -184617676 + L1MB3 LINE L1 4822 5188 -958 404 206 69 39 chr1 58046680 58046782 -184617571 + FLAM_A SINE Alu 2 106 -36 543 159 376 0 chr1 58046821 58047010 -184617343 + L1MB3 LINE L1 5176 5460 -720 318 205 12 24 chr1 58047010 58047093 -184617260 + AluJo SINE Alu 57 138 -164 3830 142 0 55 chr1 58047093 58047215 -184617138 + L1MB3 LINE L1 5494 5621 -562 1780 122 4 15 chr1 58047215 58047486 -184616867 + AluSq SINE Alu 1 268 -45 3830 142 0 55 chr1 58047486 58047950 -184616403 + L1MB3 LINE L1 5621 6039 -144 1649 167 3 7 chr1 58047950 58048243 -184616110 + AluJo SINE Alu 1 292 -20 3830 142 0 55 chr1 58048243 58048346 -184616007 + L1MB3 LINE L1 6039 6146 -37 1054 146 0 0 chr1 58048346 58048504 -184615849 - AluSq SINE Alu -20 293 136 676 222 0 0 chr1 58048920 58049046 -184615307 + FLAM_A SINE Alu 1 126 -7 1354 185 34 24 chr1 58049106 58049403 -184614950 + AluSq SINE Alu 1 300 -13 929 104 7 22 chr1 58049518 58049653 -184614700 - FLAM_C SINE Alu 0 133 1 1618 118 114 46 chr1 58049735 58050015 -184614338 - AluSx SINE Alu -13 299 1 313 346 75 19 chr1 58050299 58050513 -184613840 - L2 LINE L2 -191 3081 2856 2173 117 3 0 chr1 58050973 58051281 -184613072 - AluSx SINE Alu -3 309 1 1446 193 31 3 chr1 58051494 58051784 -184612569 - AluJo SINE Alu -14 298 1 728 316 41 74 chr1 58051834 58052198 -184612155 - L2 LINE L2 -6 3266 2915 1675 168 0 41 chr1 58052198 58052514 -184611839 + AluJo SINE Alu 1 303 -9 182 186 0 23 chr1 58052617 58052660 -184611693 + L2 LINE L2 3231 3272 0 881 244 73 12 chr1 58052744 58052990 -184611363 + MIR SINE MIR 2 262 0 412 332 100 76 chr1 58052990 58053370 -184610983 - L2 LINE L2 0 3272 2884 458 312 102 5 chr1 58053370 58053575 -184610778 - MIR SINE MIR -18 244 20 1753 166 0 7 chr1 58053639 58053947 -184610406 - AluJo SINE Alu -6 306 1 27 0 0 0 chr1 58053948 58053975 -184610378 + AT_rich Low_complexity Low_complexity 1 27 0 298 267 44 11 chr1 58054934 58055024 -184609329 + MER119 DNA MER1_type 3 95 -488 1541 178 33 0 chr1 58055024 58055300 -184609053 + AluSx SINE Alu 1 285 -27 214 0 0 98 chr1 58055302 58055353 -184609000 + (GGGAGA)n Simple_repeat Simple_repeat 3 48 0 979 213 20 0 chr1 58055398 58055600 -184608753 + MER119 DNA MER1_type 173 378 -205 299 185 37 0 chr1 58055589 58055643 -184608710 + AluSp SINE Alu 120 175 -128 * 3947 111 9 89 chr1 58055643 58056319 -184608034 - MER51A LTR ERV1 0 634 13 643 111 6 5 chr1 58056333 58056512 -184607841 + AluSx SINE Alu 35 298 -11 2092 98 30 0 chr1 58056513 58056809 -184607544 + AluSx SINE Alu 2 306 -6 879 140 10 90 chr1 58056817 58057017 -184607336 + MER119 DNA MER1_type 400 583 0 848 235 60 5 chr1 58057145 58057345 -184607008 - MIR SINE MIR -50 212 2 2075 103 0 10 chr1 58057538 58057856 -184606497 + AluSq SINE Alu 1 313 0 570 189 8 30 chr1 58058500 58058632 -184605721 + FLAM_C SINE Alu 5 133 0 1933 88 34 24 chr1 58058748 58059043 -184605310 - AluSx SINE Alu -14 298 1 784 183 0 0 chr1 58059103 58059229 -184605124 - FLAM_A SINE Alu -7 126 1 191 245 38 0 chr1 58059471 58059524 -184604829 - L2 LINE L2 -81 3191 3137 748 318 70 8 chr1 58059562 58059917 -184604436 + L2 LINE L2 2458 2834 -480 257 226 60 120 chr1 58060072 58060205 -184604148 - L1ME3A LINE L1 -81 6089 5965 1619 177 41 51 chr1 58060287 58060364 -184603989 - L1MD3 LINE L1 -8 7987 7911 1673 161 71 0 chr1 58060364 58060644 -184603709 - AluJb SINE Alu -12 300 1 1619 177 41 51 chr1 58060644 58060818 -184603535 - L1MD3 LINE L1 -84 7911 7739 1584 160 58 0 chr1 58060818 58061111 -184603242 - AluJb SINE Alu -2 310 1 1619 177 41 51 chr1 58061111 58061247 -184603106 - L1MD3 LINE L1 -256 7739 7603 368 333 109 12 chr1 58061758 58061923 -184602430 + MIR3 SINE MIR 12 192 -16 233 282 42 0 chr1 58062223 58062294 -184602059 - MIR SINE MIR -59 149 76 896 155 7 0 chr1 58062443 58062585 -184601768 - FAM SINE Alu -20 165 23 2061 126 0 0 chr1 58062707 58063008 -184601345 - AluSg SINE Alu -9 301 1 2300 96 0 0 chr1 58063013 58063315 -184601038 - AluSx SINE Alu -6 306 5 1084 159 6 0 chr1 58063557 58063739 -184600614 - AluJb SINE Alu -1 311 129 290 298 95 116 chr1 58063762 58064047 -184600306 + L2 LINE L2 2987 3265 -7 796 246 153 79 chr1 58064051 58064550 -184599803 + LTR67 LTR ERVL 4 543 -14 2185 142 0 65 chr1 58064550 58064967 -184599386 + MLT1B LTR MaLR 1 390 0 442 299 181 5 chr1 58065238 58065442 -184598911 + MIR SINE MIR 5 244 -18 802 146 0 62 chr1 58065638 58065782 -184598571 + FLAM_C SINE Alu 7 141 -2 567 276 85 35 chr1 58066120 58066319 -184598034 - MIR SINE MIR 0 262 54 1913 111 37 3 chr1 58066964 58067287 -184597066 + AluSx SINE Alu 1 312 0 198 321 119 52 chr1 58067400 58067534 -184596819 - L2 LINE L2 -5 3267 3125 1850 127 3 13 chr1 58067612 58067911 -184596442 - AluY SINE Alu -7 304 9 298 98 24 0 chr1 58067911 58067952 -184596401 - LTR12 LTR ERV1 -296 418 377 307 305 17 0 chr1 58067952 58068070 -184596283 - LTR30 LTR ERV1 -79 643 524 337 25 0 0 chr1 58068077 58068117 -184596236 - LTR12 LTR ERV1 -468 246 207 198 0 0 0 chr1 58068200 58068222 -184596131 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1630 171 0 4 chr1 58068222 58068503 -184595850 - AluJo SINE Alu -32 280 1 249 303 189 30 chr1 58068503 58068635 -184595718 - L2 LINE L2 -10 3262 3110 396 286 48 36 chr1 58068818 58068986 -184595367 + L2 LINE L2 2885 3054 -218 206 125 100 0 chr1 58069130 58069170 -184595183 + L2 LINE L2 3270 3313 0 3949 98 60 39 chr1 58069202 58069823 -184594530 + MER51A LTR ERV1 1 634 0 204 284 137 0 chr1 58069880 58069982 -184594371 + L2 LINE L2 2939 3054 -218 189 193 0 105 chr1 58070263 58070320 -184594033 + L2 LINE L2 2307 2357 -957 252 313 172 0 chr1 58070322 58070421 -184593932 + MIR SINE MIR 16 131 -77 236 273 70 16 chr1 58070427 58070555 -184593798 - L2 LINE L2 -562 2752 2618 314 377 31 0 chr1 58070741 58070871 -184593482 - L2 LINE L2 -5 3267 3134 1398 212 48 41 chr1 58070898 58071210 -184593143 + L1ME3A LINE L1 5744 6061 -109 1607 146 3 55 chr1 58071210 58071518 -184592835 + AluJb SINE Alu 1 292 -20 1398 212 48 41 chr1 58071518 58071624 -184592729 + L1ME3A LINE L1 6061 6165 -5 2135 79 0 57 chr1 58071749 58072066 -184592287 + AluSx SINE Alu 1 299 -13 2232 102 3 0 chr1 58072337 58072641 -184591712 - AluSp SINE Alu -8 305 1 353 352 16 0 chr1 58072764 58072892 -184591461 - L1ME3A LINE L1 -233 5937 5808 381 264 57 0 chr1 58072965 58073071 -184591282 + MIR SINE MIR 37 148 -60 358 214 24 12 chr1 58073096 58073180 -184591173 - MIR SINE MIR -56 152 68 181 326 124 11 chr1 58073184 58073273 -184591080 - L2 LINE L2 -4 3268 3170 550 250 66 20 chr1 58073647 58073799 -184590554 - MIR SINE MIR -16 246 88 616 268 161 0 chr1 58073799 58074023 -184590330 + MER112 DNA MER1_type 1 260 0 271 346 69 8 chr1 58074095 58074225 -184590128 - L2 LINE L2 -18 3254 3117 827 229 6 11 chr1 58074231 58074410 -184589943 - MER5B DNA MER1_type 0 178 1 1313 173 49 52 chr1 58074453 58074760 -184589593 + AluJo SINE Alu 5 310 -2 357 293 98 18 chr1 58074842 58075006 -184589347 + LTR33 LTR ERVL 1 177 -344 778 98 53 8 chr1 58075075 58075207 -184589146 + AluSg/x SINE Alu 167 304 -8 318 282 92 44 chr1 58075254 58075460 -184588893 + LTR33 LTR ERVL 304 519 -2 1235 195 69 51 chr1 58075601 58075913 -184588440 + L2 LINE L2 1912 2235 -1079 2127 98 0 3 chr1 58075913 58076222 -184588131 - AluSx SINE Alu 0 308 1 1235 195 69 51 chr1 58076222 58076283 -184588070 + L2 LINE L2 2235 2293 -1021 3946 194 37 2 chr1 58076296 58077126 -184587227 - MER63C DNA MER1_type -1 929 71 303 28 0 0 chr1 58077129 58077165 -184587188 + (CA)n Simple_repeat Simple_repeat 2 37 0 2665 209 80 23 chr1 58077206 58077412 -184586941 + L2 LINE L2 2320 2513 -800 2082 102 7 7 chr1 58077412 58077733 -184586620 - AluSx SINE Alu 0 312 5 1480 164 75 11 chr1 58077737 58078017 -184586336 - AluJo SINE Alu -14 298 1 2665 209 80 23 chr1 58078017 58078515 -184585838 + L2 LINE L2 2515 3081 -232 2004 108 3 14 chr1 58078579 58078876 -184585477 + AluSx SINE Alu 1 294 -18 1163 83 24 12 chr1 58078939 58079108 -184585245 - LTR9B LTR ERV1 -128 516 346 978 132 0 7 chr1 58079108 58079260 -184585093 - L1P5 LINE L1 -332 5819 5669 1321 81 6 0 chr1 58079384 58079557 -184584796 - AluSp SINE Alu -15 298 125 470 305 94 19 chr1 58080089 58080302 -184584051 + L2 LINE L2 2862 3090 -182 621 300 139 33 chr1 58080348 58080394 -184583959 + L2 LINE L2 2646 2686 -586 1687 150 17 14 chr1 58080394 58080549 -184583804 - AluJo SINE Alu -20 292 134 2083 120 0 0 chr1 58080549 58080849 -184583504 - AluY SINE Alu -11 300 1 1687 150 17 14 chr1 58080849 58080980 -184583373 - AluJo SINE Alu -178 134 5 621 300 139 33 chr1 58080980 58081477 -184582876 + L2 LINE L2 2686 3262 -10 1225 227 111 20 chr1 58081647 58082053 -184582300 + LTR16A LTR ERVL 8 450 0 709 120 0 56 chr1 58082903 58083028 -184581325 - AluSq/x SINE Alu -194 119 2 424 240 80 0 chr1 58083066 58083166 -184581187 - AluJ SINE Alu -21 291 184 846 145 0 22 chr1 58083166 58083304 -184581049 - AluJ SINE Alu -177 135 1 1997 120 0 10 chr1 58083530 58083830 -184580523 + AluJb SINE Alu 1 297 -15 273 319 102 59 chr1 58083873 58084227 -184580126 - L2 LINE L2 -351 2963 2595 1867 86 4 0 chr1 58084248 58084492 -184579861 + AluSx SINE Alu 7 251 -61 352 315 46 0 chr1 58084674 58084804 -184579549 + MER117 DNA MER1_type 28 163 -34 858 255 31 15 chr1 58084877 58085136 -184579217 + L1ME3 LINE L1 5898 6160 -2 2152 120 0 0 chr1 58085147 58085447 -184578906 + AluSx SINE Alu 1 300 -12 2276 88 7 0 chr1 58085594 58085899 -184578454 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr1 58086206 58086227 -184578126 + AT_rich Low_complexity Low_complexity 1 21 0 1704 156 14 7 chr1 58086508 58086790 -184577563 + AluJo SINE Alu 1 284 -28 1800 94 29 0 chr1 58086866 58087143 -184577210 + L1MA2 LINE L1 6020 6304 0 931 167 6 12 chr1 58087158 58087320 -184577033 + FRAM SINE Alu 1 159 -17 1863 207 8 6 chr1 58087323 58087685 -184576668 + MLT1A1 LTR MaLR 1 363 -2 2604 77 12 77 chr1 58087702 58088016 -184576337 + THE1C LTR MaLR 1 285 -90 1991 95 0 24 chr1 58088016 58088310 -184576043 + AluSc SINE Alu 1 287 -22 2604 77 12 77 chr1 58088310 58088396 -184575957 + THE1C LTR MaLR 285 375 0 25 0 0 28 chr1 58088694 58088711 -184575642 + AT_rich Low_complexity Low_complexity 1 17 -18 2035 134 3 0 chr1 58088711 58089016 -184575337 - AluSx SINE Alu -6 306 1 25 0 0 28 chr1 58089016 58089034 -184575319 + AT_rich Low_complexity Low_complexity 17 35 0 1225 279 115 11 chr1 58089098 58089639 -184574714 - L1ME4a LINE L1 -3 6118 5522 2198 100 0 0 chr1 58091124 58091425 -184572928 + AluSx SINE Alu 1 301 -11 2075 103 0 10 chr1 58092120 58092438 -184571915 - AluSq SINE Alu 0 313 1 848 235 60 5 chr1 58092631 58092831 -184571522 + MIR SINE MIR 2 212 -50 879 140 10 90 chr1 58092959 58093159 -184571194 - MER119 DNA MER1_type 0 583 400 2159 109 7 0 chr1 58093167 58093471 -184570882 - AluSx SINE Alu -6 306 1 1976 100 20 27 chr1 58093959 58094258 -184570095 - AluSx SINE Alu -15 297 1 285 299 149 60 chr1 58094347 58094715 -184569638 - L2 LINE L2 -525 2789 2389 265 313 131 0 chr1 58095008 58095107 -184569246 - MIR SINE MIR -64 144 33 1171 173 15 0 chr1 58095187 58095389 -184568964 - AluJo SINE Alu -22 290 86 1824 121 3 21 chr1 58095593 58095882 -184568471 - AluJb SINE Alu -27 285 2 975 174 43 0 chr1 58096053 58096237 -184568116 - AluJb SINE Alu -27 285 94 522 200 0 0 chr1 58096266 58096366 -184567987 + FRAM SINE Alu 69 168 -8 476 228 79 0 chr1 58096366 58096493 -184567860 - L1ME LINE L1 -506 5615 5479 2161 87 10 23 chr1 58096508 58096818 -184567535 + AluY SINE Alu 1 306 -5 307 229 29 47 chr1 58096828 58096935 -184567418 - L1P LINE L1 -754 5407 5300 1185 117 17 0 chr1 58096953 58097133 -184567220 - AluSg/x SINE Alu -16 296 114 609 313 124 28 chr1 58097238 58097704 -184566649 + L2 LINE L2 1879 2389 -925 2020 144 7 0 chr1 58098299 58098605 -184565748 - AluJb SINE Alu -4 308 1 566 303 102 89 chr1 58098892 58099354 -184564999 - L2 LINE L2 -1 3271 2804 2010 128 7 0 chr1 58099515 58099812 -184564541 + AluSx SINE Alu 1 299 -13 1904 140 3 19 chr1 58100021 58100192 -184564161 - AluSx SINE Alu -9 303 138 2018 113 3 3 chr1 58100192 58100493 -184563860 - AluSq SINE Alu -12 301 1 1904 140 3 19 chr1 58100493 58100629 -184563724 - AluSx SINE Alu -174 138 1 418 266 160 11 chr1 58100749 58100937 -184563416 - MLT1J LTR MaLR -7 504 289 582 242 12 50 chr1 58100973 58101034 -184563319 - MLT1J LTR MaLR -341 170 108 2105 90 31 0 chr1 58101034 58101322 -184563031 - AluSg SINE Alu -13 297 1 582 242 12 50 chr1 58101322 58101421 -184562932 - MLT1J LTR MaLR -403 108 16 1876 116 0 21 chr1 58101514 58101798 -184562555 - AluSx SINE Alu -7 305 28 294 200 0 17 chr1 58101906 58101966 -184562387 + MLT1J LTR MaLR 55 113 -398 1017 94 14 0 chr1 58101967 58102105 -184562248 + AluSg SINE Alu 1 140 -170 1724 140 0 11 chr1 58102105 58102383 -184561970 + AluJb SINE Alu 33 307 -5 266 279 15 0 chr1 58102638 58102706 -184561647 + L2 LINE L2 3243 3311 -2 614 88 0 0 chr1 58102972 58103063 -184561290 + MER53 DNA DNA 99 189 0 707 187 0 8 chr1 58103177 58103300 -184561053 - FLAM_A SINE Alu -11 122 1 297 308 0 0 chr1 58103421 58103499 -184560854 + MIR SINE MIR 71 148 -60 1947 145 3 3 chr1 58103777 58104088 -184560265 - AluSx SINE Alu -1 311 1 1071 201 11 0 chr1 58104092 58104271 -184560082 + MER20 DNA MER1_type 1 181 -38 1442 184 11 43 chr1 58104271 58104401 -184559952 + AluJb SINE Alu 1 134 -178 1830 120 3 40 chr1 58104401 58104702 -184559651 + AluSq SINE Alu 1 290 -23 1442 184 11 43 chr1 58104702 58104853 -184559500 + AluJb SINE Alu 134 273 -39 249 229 24 60 chr1 58104853 58104936 -184559417 - MIR SINE MIR -110 98 19 1460 79 42 83 chr1 58104997 58105132 -184559221 - MER30 DNA MER1_type 0 230 107 2010 97 21 0 chr1 58105132 58105460 -184558893 + AluSp SINE Alu 1 334 0 1460 79 42 83 chr1 58105460 58105563 -184558790 - MER30 DNA MER1_type -123 107 1 1051 128 27 27 chr1 58106800 58106987 -184557366 - MER5A DNA MER1_type 0 189 3 464 308 70 53 chr1 58107736 58108083 -184556270 - L2 LINE L2 -200 3072 2722 2130 110 10 3 chr1 58108595 58108905 -184555448 + AluSx SINE Alu 1 312 0 1794 129 18 7 chr1 58108917 58109195 -184555158 - Tigger1 DNA MER2_type -1296 1122 842 2220 108 0 0 chr1 58109197 58109504 -184554849 - AluSg SINE Alu -3 307 1 894 166 0 46 chr1 58109507 58109682 -184554671 - FRAM SINE Alu 0 40 1 1216 119 0 0 chr1 58109719 58109887 -184554466 - AluSg/x SINE Alu -24 286 119 1708 156 4 7 chr1 58109887 58110163 -184554190 - AluSx SINE Alu -37 275 1 2097 174 29 7 chr1 58110163 58110576 -184553777 - L1 LINE L1 -1153 4993 4572 1852 206 35 51 chr1 58110574 58110678 -184553675 - L1M4 LINE L1 -840 5306 5202 * 2220 63 0 14 chr1 58110678 58110988 -184553365 - AluY SINE Alu 0 306 1 1852 206 35 51 chr1 58110988 58111384 -184552969 - L1M4 LINE L1 -944 5202 4813 2089 83 0 4 chr1 58111384 58111660 -184552693 - AluY SINE Alu -18 293 19 1852 206 35 51 chr1 58111660 58111726 -184552627 - L1M4 LINE L1 -1333 4813 4747 190 347 89 40 chr1 58111863 58111987 -184552366 + L2 LINE L2 3125 3254 -18 1291 151 179 16 chr1 58112020 58112271 -184552082 + AluJo SINE Alu 1 292 -10 207 0 0 0 chr1 58112305 58112328 -184552025 + (CCA)n Simple_repeat Simple_repeat 1 23 0 640 258 148 4 chr1 58112699 58112928 -184551425 - MIR SINE MIR 0 262 1 2170 119 0 0 chr1 58113010 58113305 -184551048 + AluSx SINE Alu 1 295 -17 189 214 161 0 chr1 58113379 58113435 -184550918 - MIR SINE MIR -78 130 66 189 0 0 0 chr1 58113469 58113490 -184550863 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 1542 185 28 0 chr1 58113490 58113777 -184550576 - AluJo SINE Alu -17 295 1 346 197 15 0 chr1 58114804 58114870 -184549483 - MIR SINE MIR -73 189 123 24 0 0 0 chr1 58115163 58115187 -184549166 + AT_rich Low_complexity Low_complexity 1 24 0 215 186 0 23 chr1 58115235 58115278 -184549075 + L2 LINE L2 1958 1999 -1315 415 320 130 37 chr1 58115291 58115591 -184548762 + L2 LINE L2 2431 2758 -556 2241 194 31 87 chr1 58115609 58115715 -184548638 - L1MC/D LINE L1 -789 5357 5247 1417 193 3 27 chr1 58115715 58116011 -184548342 - AluJb SINE Alu -21 291 3 2241 194 31 87 chr1 58116011 58116139 -184548214 - L1MC/D LINE L1 -899 5247 5113 213 39 0 0 chr1 58116139 58116165 -184548188 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1908 117 0 11 chr1 58116173 58116447 -184547906 - AluSx SINE Alu -41 271 1 2241 194 31 87 chr1 58116447 58117064 -184547289 - L1MC/D LINE L1 -1040 5106 4634 546 16 0 0 chr1 58117064 58117127 -184547226 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 913 143 14 0 chr1 58117141 58117288 -184547065 + AluJo SINE Alu 1 149 -163 313 339 18 0 chr1 58117334 58117443 -184546910 + MIR SINE MIR 33 143 -65 697 159 97 0 chr1 58117491 58117604 -184546749 + AluJb SINE Alu 168 291 -21 414 184 35 0 chr1 58117622 58117709 -184546644 - L1MC/D LINE L1 -1593 4553 4464 1462 154 4 43 chr1 58117855 58118135 -184546218 - AluJo SINE Alu -17 295 27 585 198 39 22 chr1 58118135 58118317 -184546036 - L1MC/D LINE L1 -1680 4466 4282 2391 71 0 3 chr1 58118329 58118640 -184545713 - AluY SINE Alu -1 310 1 188 322 115 11 chr1 58118745 58118832 -184545521 - L3 LINE CR1 -44 1533 1438 191 0 0 94 chr1 58118844 58118876 -184545477 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 700 330 53 0 chr1 58118988 58119273 -184545080 - L3 LINE CR1 -196 1381 1082 310 330 40 40 chr1 58119311 58119487 -184544866 + MIR3 SINE MIR 33 208 0 780 139 0 0 chr1 58119659 58119781 -184544572 + AluSg/x SINE Alu 181 302 -10 2303 76 0 7 chr1 58119787 58120090 -184544263 + AluSg1 SINE Alu 1 301 -8 304 277 20 50 chr1 58120248 58120349 -184544004 - L3 LINE CR1 -543 1034 937 2211 107 0 22 chr1 58120379 58120696 -184543657 + AluSx SINE Alu 1 310 -2 438 268 100 37 chr1 58120755 58120990 -184543363 - MIR SINE MIR 0 262 16 450 274 34 0 chr1 58121305 58121422 -184542931 + MIR3 SINE MIR 65 185 -23 366 320 16 8 chr1 58121555 58121680 -184542673 + MIR SINE MIR 118 243 -19 296 248 67 49 chr1 58121924 58122047 -184542306 + MIR SINE MIR 25 147 -61 684 276 28 23 chr1 58122556 58122773 -184541580 + MIR SINE MIR 20 237 -25 341 320 0 20 chr1 58122852 58122952 -184541401 + MIR SINE MIR 111 208 -54 352 222 71 50 chr1 58122952 58123051 -184541302 - L1ME2 LINE L1 -335 5829 5729 25 75 0 0 chr1 58123145 58123198 -184541155 + AT_rich Low_complexity Low_complexity 1 53 0 180 156 26 13 chr1 58123201 58123278 -184541075 + (TA)n Simple_repeat Simple_repeat 2 79 0 553 235 26 119 chr1 58123280 58123458 -184540895 - L1ME2 LINE L1 -526 5595 5449 1856 151 7 0 chr1 58123458 58123763 -184540590 - AluJb SINE Alu -5 307 1 553 235 26 119 chr1 58123763 58123852 -184540501 - L1ME2 LINE L1 -672 5449 5353 1370 91 0 0 chr1 58123966 58124141 -184540212 - AluSc SINE Alu -134 175 1 1453 106 10 0 chr1 58124186 58124394 -184539959 - AluSq SINE Alu -13 300 91 817 167 7 7 chr1 58124402 58124546 -184539807 - AluSq/x SINE Alu -168 144 1 252 384 17 12 chr1 58124586 58124758 -184539595 + L2 LINE L2 2811 2983 -289 385 385 56 18 chr1 58124795 58125135 -184539218 + L2 LINE L2 2839 3191 -81 1290 95 0 6 chr1 58125140 58125319 -184539034 - AluY SINE Alu -4 307 130 626 230 24 127 chr1 58125698 58125820 -184538533 + MIR SINE MIR 3 89 -173 1944 109 11 0 chr1 58125820 58126120 -184538233 - AluSg SINE Alu 0 303 1 626 230 24 127 chr1 58126120 58126247 -184538106 + MIR SINE MIR 89 228 -34 1917 148 3 0 chr1 58126248 58126559 -184537794 + AluSx SINE Alu 1 312 0 2259 89 0 16 chr1 58127150 58127454 -184536899 - AluSx SINE Alu -13 299 1 323 289 56 0 chr1 58127761 58127851 -184536502 - L2 LINE L2 -32 3240 3146 1011 168 12 6 chr1 58127914 58128087 -184536266 + FAM SINE Alu 1 43 -6 355 310 60 69 chr1 58128147 58128187 -184536166 - L2 LINE L2 -218 3054 3015 2302 78 3 0 chr1 58128187 58128506 -184535847 - AluSp SINE Alu 0 320 1 355 310 60 69 chr1 58128506 58128695 -184535658 - L2 LINE L2 -257 3015 2825 2108 88 0 23 chr1 58129251 58129557 -184534796 + AluSg1 SINE Alu 1 299 -10 210 393 27 0 chr1 58129605 58129717 -184534636 - L2 LINE L2 -26 3287 3173 346 273 61 0 chr1 58130059 58130158 -184534195 + MIR3 SINE MIR 95 199 -9 200 323 0 0 chr1 58130163 58130225 -184534128 - MER5A DNA MER1_type 0 189 128 647 130 130 9 chr1 58130228 58130336 -184534017 + FLAM_A SINE Alu 1 121 -21 2070 124 0 0 chr1 58130350 58130640 -184533713 + AluSq SINE Alu 1 290 -23 407 276 0 0 chr1 58130664 58130762 -184533591 - MER5A DNA MER1_type -83 106 9 2152 76 7 0 chr1 58130851 58131128 -184533225 + AluSp SINE Alu 1 279 -34 1823 169 0 0 chr1 58131261 58131557 -184532796 - AluJo SINE Alu -16 296 1 202 216 0 137 chr1 58131656 58131758 -184532595 - MIR SINE MIR -118 144 57 2295 88 0 7 chr1 58131801 58132109 -184532244 - AluSg1 SINE Alu -3 306 1 2153 116 3 0 chr1 58132128 58132430 -184531923 - AluSq SINE Alu -10 303 1 957 134 0 0 chr1 58132439 58132581 -184531772 - AluSg/x SINE Alu -22 288 147 272 299 14 0 chr1 58132596 58132677 -184531676 + MIR SINE MIR 63 140 -68 240 225 70 0 chr1 58133220 58133294 -184531059 + MIR SINE MIR 80 122 -86 371 143 48 0 chr1 58133296 58133359 -184530994 + AluS SINE Alu 1 66 -237 3397 204 63 18 chr1 58133359 58134561 -184529792 + L1ME1 LINE L1 4902 6154 -12 191 265 88 0 chr1 58134675 58134743 -184529610 - L2 LINE L2 -1 3312 3239 199 171 0 24 chr1 58134823 58134864 -184529489 - L2 LINE L2 -338 2976 2937 1550 107 36 0 chr1 58134864 58135088 -184529265 + AluSg SINE Alu 57 288 -22 191 229 0 0 chr1 58135285 58135320 -184529033 - L2 LINE L2 -104 3168 3134 316 313 111 49 chr1 58135336 58135579 -184528774 - MIR SINE MIR -1 261 4 2374 69 0 10 chr1 58136269 58136573 -184527780 + AluSq SINE Alu 1 301 -12 2101 102 0 20 chr1 58137164 58137467 -184526886 - AluSg SINE Alu -13 297 1 2785 16 0 0 chr1 58137567 58137884 -184526469 - AluYb8 SINE Alu 0 318 2 237 108 0 0 chr1 58137886 58137923 -184526430 + (T)n Simple_repeat Simple_repeat 1 37 0 587 103 0 0 chr1 58138032 58138110 -184526243 - MER30B DNA MER1_type -112 78 1 1025 73 7 7 chr1 58138140 58138276 -184526077 + AluSq/x SINE Alu 1 136 -176 2038 115 0 7 chr1 58138276 58138572 -184525781 + AluY SINE Alu 1 294 -17 214 348 103 32 chr1 58138592 58138747 -184525606 - L2 LINE L2 -448 2866 2701 1018 221 82 21 chr1 58138832 58139162 -184525191 - HAL1b LINE L1 -64 1284 935 604 126 0 0 chr1 58139166 58139313 -184525040 - AluSg/x SINE Alu 0 342 196 1780 107 33 53 chr1 58139357 58139656 -184524697 + AluSx SINE Alu 1 293 -19 1712 167 14 0 chr1 58139665 58139953 -184524400 + AluJo SINE Alu 1 292 -20 1704 87 4 0 chr1 58140054 58140284 -184524069 + AluSg/x SINE Alu 72 302 -10 673 282 115 8 chr1 58140374 58140608 -184523745 - MIR SINE MIR 0 262 4 2155 101 0 0 chr1 58141011 58141297 -184523056 - AluSx SINE Alu -26 286 1 263 294 0 15 chr1 58141418 58141486 -184522867 - MIR SINE MIR 0 262 196 193 219 49 0 chr1 58141602 58141643 -184522710 - MIR SINE MIR -72 136 94 368 329 7 7 chr1 58141645 58141791 -184522562 + MARNA DNA Mariner 256 401 -185 1876 134 3 10 chr1 58141904 58142195 -184522158 - AluSx SINE Alu -20 292 4 372 184 2 2 chr1 58142220 58142285 -184522068 + AluSx SINE Alu 2 58 -241 1654 124 19 8 chr1 58142385 58142652 -184521701 + AluSx SINE Alu 36 305 -7 538 240 62 57 chr1 58143153 58143310 -184521043 + MIR SINE MIR 57 217 -45 1749 122 64 7 chr1 58143310 58143605 -184520748 + AluSx SINE Alu 1 312 0 538 240 62 57 chr1 58143605 58143639 -184520714 + MIR SINE MIR 217 249 -13 337 324 9 0 chr1 58143817 58143928 -184520425 - MIR3 SINE MIR -23 185 74 1844 121 3 21 chr1 58143940 58144229 -184520124 + AluSx SINE Alu 13 296 -16 1990 90 31 68 chr1 58144305 58144626 -184519727 + AluSp SINE Alu 1 309 -4 1548 134 116 11 chr1 58144734 58145010 -184519343 + AluSx SINE Alu 1 305 -7 1991 97 18 0 chr1 58145444 58145722 -184518631 - AluSq SINE Alu -22 291 9 379 339 51 28 chr1 58145731 58145908 -184518445 - L2 LINE L2 -2 3270 3090 828 92 0 0 chr1 58146035 58146144 -184518209 + AluSq/x SINE Alu 3 111 -202 1728 136 25 18 chr1 58146326 58146462 -184517891 + AluSx SINE Alu 1 135 -169 2401 83 0 0 chr1 58146462 58146774 -184517579 + AluSx SINE Alu 1 312 0 1728 136 25 18 chr1 58146774 58146939 -184517414 + AluSx SINE Alu 135 304 0 304 258 30 0 chr1 58146944 58147010 -184517343 - L2 LINE L2 -5 3308 3241 213 185 169 15 chr1 58147026 58147091 -184517262 - MER91B DNA MER1_type -115 75 1 1803 113 0 4 chr1 58147417 58147673 -184516680 + AluSx SINE Alu 41 295 -17 2243 62 14 0 chr1 58147886 58148178 -184516175 + AluSp SINE Alu 1 296 -17 2191 117 0 0 chr1 58148186 58148495 -184515858 + AluSp SINE Alu 1 309 -4 225 0 0 0 chr1 58148695 58148720 -184515633 + (A)n Simple_repeat Simple_repeat 1 25 0 293 214 2 0 chr1 58148816 58148876 -184515477 + L1ME LINE L1 5518 5570 -551 2010 80 38 17 chr1 58149157 58149445 -184514908 + AluY SINE Alu 2 295 -16 358 121 0 2 chr1 58149468 58149545 -184514808 + AluSp/q SINE Alu 236 306 0 2104 117 3 0 chr1 58149545 58149843 -184514510 + AluSx SINE Alu 2 300 -12 311 241 0 58 chr1 58150451 58150538 -184513815 - MIR SINE MIR -71 191 110 2195 65 10 14 chr1 58150557 58150847 -184513506 - AluSc SINE Alu -20 289 1 273 309 0 0 chr1 58150898 58150979 -184513374 + MIR SINE MIR 77 157 -105 2026 127 184 8 chr1 58150979 58151171 -184513182 - Tigger3(Golem) DNA MER2_type 0 3029 2872 2194 110 0 13 chr1 58151171 58151481 -184512872 + AluSx SINE Alu 1 306 -6 2026 127 184 8 chr1 58151481 58151689 -184512664 - Tigger3(Golem) DNA MER2_type -157 2872 2558 1109 181 0 25 chr1 58151706 58151910 -184512443 - AluJo SINE Alu -45 267 69 398 79 34 225 chr1 58151912 58151988 -184512365 - Tigger3(Golem) DNA MER2_type -460 2569 2480 2065 56 12 9 chr1 58151988 58152518 -184511835 - SVA Other Other 0 1386 700 398 79 34 225 chr1 58152518 58152551 -184511802 - Tigger3(Golem) DNA MER2_type -549 2480 2492 2392 51 0 0 chr1 58152551 58152847 -184511506 - AluY SINE Alu -15 296 1 398 79 34 225 chr1 58152847 58152905 -184511448 - Tigger3(Golem) DNA MER2_type -536 2493 2426 1793 157 23 3 chr1 58152932 58153232 -184511121 - AluJb SINE Alu -6 306 1 1068 275 8 4 chr1 58153450 58153701 -184510652 + MIR SINE MIR 1 252 -10 427 265 77 0 chr1 58153705 58153822 -184510531 + L2 LINE L2 3188 3313 0 2313 96 0 3 chr1 58154079 58154391 -184509962 - AluSx SINE Alu 0 312 2 769 191 113 65 chr1 58154520 58154629 -184509724 - AluJb SINE Alu -70 242 140 2082 124 3 0 chr1 58154629 58154928 -184509425 - AluSx SINE Alu -12 300 1 769 191 113 65 chr1 58154928 58155048 -184509305 - AluJb SINE Alu -172 140 2 916 214 214 45 chr1 58155269 58155605 -184508748 + L2 LINE L2 1913 2305 -1009 843 99 0 0 chr1 58155631 58155742 -184508611 + AluJo/FLAM SINE Alu 1 111 -201 2061 116 0 0 chr1 58155745 58156037 -184508316 + AluSx SINE Alu 16 307 -5 378 44 0 0 chr1 58156117 58156162 -184508191 + AluY SINE Alu 1 45 -256 2024 116 0 10 chr1 58156257 58156550 -184507803 + AluSp SINE Alu 3 292 -21 1875 136 0 11 chr1 58156587 58156874 -184507479 + AluSx SINE Alu 18 301 -11 2230 108 0 0 chr1 58157249 58157556 -184506797 + AluSx SINE Alu 1 307 -5 428 83 83 0 chr1 58157799 58157895 -184506458 + T-rich Low_complexity Low_complexity 5 108 0 1843 138 13 3 chr1 58157902 58158207 -184506146 - AluSq SINE Alu -5 308 1 3500 214 68 11 chr1 58158230 58158983 -184505370 - L1MDa LINE L1 -5624 916 121 2067 128 3 0 chr1 58159192 58159498 -184504855 - AluSx SINE Alu -5 307 1 270 343 43 53 chr1 58159604 58159811 -184504542 + L2 LINE L2 3104 3308 -5 1111 195 50 11 chr1 58159892 58160169 -184504184 - MER33 DNA MER1_type -36 288 1 1101 207 5 0 chr1 58160694 58160907 -184503446 - AluJo SINE Alu -11 301 88 497 272 173 77 chr1 58161033 58161397 -184502956 - MLT1I LTR MaLR -10 399 1 449 255 83 21 chr1 58161398 58161543 -184502810 + MIR SINE MIR 59 212 -50 191 293 155 17 chr1 58162529 58162645 -184501708 + MIR SINE MIR 79 210 -52 198 0 0 0 chr1 58162730 58162752 -184501601 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2411 70 0 0 chr1 58163279 58163580 -184500773 - AluY SINE Alu -10 301 1 234 62 0 0 chr1 58163783 58163815 -184500538 + (CAA)n Simple_repeat Simple_repeat 2 33 0 816 175 0 0 chr1 58163957 58164100 -184500253 - FLAM_C SINE Alu 0 143 1 2011 140 0 0 chr1 58164103 58164403 -184499950 - AluSx SINE Alu -10 302 3 6115 126 33 18 chr1 58164413 58165555 -184498798 - L1MA5A LINE L1 -4 6293 5170 1782 162 10 3 chr1 58165555 58165851 -184498502 - AluJb SINE Alu -14 298 1 6115 126 33 18 chr1 58165851 58165915 -184498438 - L1MA5A LINE L1 -1127 5170 5108 2260 100 0 3 chr1 58165915 58166224 -184498129 - AluSq SINE Alu -5 308 1 6115 126 33 18 chr1 58166224 58166733 -184497620 - L1MA5A LINE L1 -1189 5108 4557 364 169 0 28 chr1 58166756 58166827 -184497526 - AluJ/FRAM SINE Alu -6 296 228 775 186 0 0 chr1 58166837 58166961 -184497392 - FLAM_C SINE Alu -18 125 2 1937 116 3 38 chr1 58167457 58167778 -184496575 - AluSx SINE Alu 0 311 1 520 288 73 23 chr1 58167799 58167976 -184496377 + MIR SINE MIR 20 205 -57 427 312 105 32 chr1 58167958 58168205 -184496148 - L2 LINE L2 -67 3246 2982 * 859 149 0 15 chr1 58168396 58168530 -184495823 - FLAM_C SINE Alu -1 132 1 24 0 0 0 chr1 58168534 58168558 -184495795 + AT_rich Low_complexity Low_complexity 1 24 0 1484 179 36 14 chr1 58168558 58168838 -184495515 - AluJo SINE Alu -24 288 3 1480 184 36 26 chr1 58168838 58169143 -184495210 - AluJo SINE Alu -1 311 4 1486 189 130 80 chr1 58169145 58169453 -184494900 - L1MDa LINE L1 -4960 1580 1289 1883 105 0 18 chr1 58169453 58169729 -184494624 - AluSg SINE Alu -6 304 34 1486 189 130 80 chr1 58169729 58170044 -184494309 - L1MDa LINE L1 -5251 1289 926 2356 66 0 3 chr1 58170070 58170373 -184493980 + AluY SINE Alu 1 302 -9 805 123 8 23 chr1 58170376 58170506 -184493847 + Tigger2 DNA MER2_type 1 128 -2590 749 242 91 17 chr1 58170639 58170870 -184493483 + MER21B LTR ERV1 605 852 -11 730 219 32 13 chr1 58170961 58171116 -184493237 - MER21B LTR ERV1 -685 178 21 2206 93 0 10 chr1 58171125 58171426 -184492927 - AluSx SINE Alu -14 298 1 26 0 0 0 chr1 58171436 58171462 -184492891 + AT_rich Low_complexity Low_complexity 1 26 0 749 183 44 135 chr1 58171462 58171691 -184492662 + MIR SINE MIR 54 261 -1 202 225 141 14 chr1 58171818 58171889 -184492464 + L2 LINE L2 3232 3311 -2 272 341 81 8 chr1 58171894 58172017 -184492336 + L2 LINE L2 3139 3270 -2 615 294 97 54 chr1 58172603 58172736 -184491617 - L2 LINE L2 -50 3263 3137 2477 50 0 0 chr1 58172736 58173039 -184491314 + AluY SINE Alu 1 303 -8 615 294 97 54 chr1 58173039 58173296 -184491057 - L2 LINE L2 -176 3137 2856 520 186 159 0 chr1 58173361 58173474 -184490879 - FLAM_C SINE Alu -2 131 1 1211 119 0 0 chr1 58173477 58173654 -184490699 - AluSg/x SINE Alu -8 302 126 708 217 71 43 chr1 58173823 58173942 -184490411 + MER5A DNA MER1_type 1 115 -74 624 41 21 10 chr1 58173942 58174039 -184490314 + (TG)n Simple_repeat Simple_repeat 1 98 0 1697 188 7 0 chr1 58174039 58174332 -184490021 - 7SLRNA srpRNA srpRNA -25 295 1 708 217 71 43 chr1 58174332 58174395 -184489958 + MER5A DNA MER1_type 114 189 0 448 296 59 23 chr1 58174417 58174637 -184489716 + L2 LINE L2 678 905 -2409 1418 120 10 0 chr1 58174642 58174850 -184489503 - AluSg/x SINE Alu -18 294 85 842 234 102 42 chr1 58174850 58175115 -184489238 - Charlie2 DNA MER1_type -2574 288 8 3340 146 7 70 chr1 58175170 58175292 -184489061 - L1MB7 LINE L1 -26 6158 6030 1469 176 0 8 chr1 58175292 58175554 -184488799 - AluJb SINE Alu -27 285 26 3340 146 7 70 chr1 58175554 58175904 -184488449 - L1MB7 LINE L1 -154 6030 5620 2106 120 0 0 chr1 58175904 58176195 -184488158 - AluSg SINE Alu -19 291 1 3340 146 7 70 chr1 58176195 58176425 -184487928 - L1MB7 LINE L1 -564 5620 5377 1586 89 0 0 chr1 58176449 58176651 -184487702 - AluSc SINE Alu -107 202 1 1446 106 10 0 chr1 58176696 58176903 -184487450 - AluSq SINE Alu -14 299 91 817 167 7 7 chr1 58176911 58177055 -184487298 - AluSq/x SINE Alu -168 144 1 252 384 17 12 chr1 58177095 58177267 -184487086 + L2 LINE L2 2811 2983 -289 385 385 56 18 chr1 58177304 58177644 -184486709 + L2 LINE L2 2839 3191 -81 1307 89 0 6 chr1 58177649 58177828 -184486525 - AluY SINE Alu -4 307 130 426 267 25 33 chr1 58178207 58178327 -184486026 + MIR SINE MIR 3 121 -141 1944 109 11 0 chr1 58178329 58178629 -184485724 - AluSg SINE Alu 0 303 1 424 313 168 5 chr1 58178632 58178846 -184485507 + L2 LINE L2 2716 2964 -350 32 26 0 0 chr1 58178873 58178912 -184485441 + AT_rich Low_complexity Low_complexity 1 39 0 1558 117 32 67 chr1 58179085 58179160 -184485193 - L1PB4 LINE L1 -4 6152 6076 1871 101 4 7 chr1 58179160 58179436 -184484917 - AluSp SINE Alu -9 304 30 1558 117 32 67 chr1 58179436 58179643 -184484710 - L1PB4 LINE L1 -80 6076 5880 467 229 171 65 chr1 58179643 58179813 -184484540 + L2 LINE L2 3126 3313 0 1959 100 9 91 chr1 58180007 58180347 -184484006 - AluSx SINE Alu 0 312 1 583 277 88 34 chr1 58181050 58181288 -184483065 + MIR SINE MIR 3 253 -9 2250 189 57 41 chr1 58181357 58181869 -184482484 - MLT1F1 LTR MaLR -47 520 1 2252 96 0 13 chr1 58181869 58182181 -184482172 + AluSg SINE Alu 1 308 -2 234 338 110 32 chr1 58182201 58182355 -184481998 - L2 LINE L2 -448 2866 2701 207 329 26 0 chr1 58182955 58183031 -184481322 - L2 LINE L2 -219 3053 2976 497 278 24 58 chr1 58183684 58183889 -184480464 - L2 LINE L2 -21 3292 3095 440 155 56 0 chr1 58183872 58183943 -184480410 - MIR SINE MIR -169 93 19 * 381 276 9 29 chr1 58184042 58184147 -184480206 - L2 LINE L2 -2 3270 3168 2310 88 0 7 chr1 58184456 58184763 -184479590 + AluSg SINE Alu 1 305 -5 1005 142 111 26 chr1 58184996 58185186 -184479167 + MER20 DNA MER1_type 1 206 -13 1112 191 4 35 chr1 58185381 58185612 -184478741 + AluJo SINE Alu 1 224 -88 254 315 234 0 chr1 58185794 58185905 -184478448 - L2 LINE L2 0 3272 3136 230 374 6 16 chr1 58186030 58186212 -184478141 + (TG)n Simple_repeat Simple_repeat 1 180 0 276 209 158 124 chr1 58187457 58187634 -184476719 + MER5A DNA MER1_type 6 188 -1 718 173 0 8 chr1 58187737 58187864 -184476489 - MER5B DNA MER1_type 0 178 53 478 186 88 18 chr1 58188428 58188541 -184475812 + MIR SINE MIR 132 252 -10 271 248 29 58 chr1 58188657 58188794 -184475559 - L1ME4a LINE L1 -1 6120 5988 999 98 0 0 chr1 58188851 58188984 -184475369 + AluSq/x SINE Alu 1 133 -180 2456 56 0 0 chr1 58188987 58189290 -184475063 + AluY SINE Alu 1 303 -8 426 323 124 19 chr1 58189290 58189547 -184474806 - L2 LINE L2 -174 3139 2856 520 186 159 0 chr1 58189612 58189725 -184474628 - FLAM_C SINE Alu -2 131 1 2122 116 3 0 chr1 58189728 58190031 -184474322 - AluSx SINE Alu -8 304 1 806 139 0 49 chr1 58190062 58190206 -184474147 + FLAM_C SINE Alu 6 142 -1 2132 89 10 0 chr1 58190387 58190678 -184473675 + AluSq SINE Alu 1 294 -19 182 338 0 0 chr1 58190893 58190964 -184473389 - L2 LINE L2 -494 2820 2750 262 297 40 0 chr1 58191102 58191203 -184473150 + L2 LINE L2 2599 2703 -611 1038 151 0 0 chr1 58191373 58191539 -184472814 - AluSg/x SINE Alu -10 302 137 2278 104 0 0 chr1 58191539 58191846 -184472507 - AluSx SINE Alu -5 307 1 459 296 174 5 chr1 58191849 58192062 -184472291 + L2 LINE L2 2716 2964 -350 32 26 0 0 chr1 58192089 58192128 -184472225 + AT_rich Low_complexity Low_complexity 1 39 0 1562 117 32 64 chr1 58192301 58192376 -184471977 - L1PB4 LINE L1 -4 6152 6076 2008 83 4 7 chr1 58192376 58192652 -184471701 - AluSp SINE Alu -9 304 30 1562 117 32 64 chr1 58192652 58192858 -184471495 - L1PB4 LINE L1 -80 6076 5880 467 229 171 65 chr1 58192858 58193028 -184471325 + L2 LINE L2 3126 3313 0 1959 100 9 91 chr1 58193222 58193562 -184470791 - AluSx SINE Alu 0 312 1 583 277 88 34 chr1 58194265 58194503 -184469850 + MIR SINE MIR 3 253 -9 2250 189 57 41 chr1 58194572 58195084 -184469269 - MLT1F1 LTR MaLR -47 520 1 2026 113 11 0 chr1 58195084 58195367 -184468986 + AluSx SINE Alu 1 286 -26 673 282 115 8 chr1 58195770 58196004 -184468349 + MIR SINE MIR 4 262 0 2251 87 3 0 chr1 58196094 58196393 -184467960 - AluSg SINE Alu -10 300 1 2122 123 3 0 chr1 58196610 58196919 -184467434 - AluSx SINE Alu -2 310 1 1264 165 132 29 chr1 58197002 58197275 -184467078 + AluJo SINE Alu 3 303 -9 1111 160 11 0 chr1 58197315 58197503 -184466850 + AluJb SINE Alu 121 310 -2 311 279 13 13 chr1 58197934 58198013 -184466340 - L2 LINE L2 0 3313 3235 1726 135 0 0 chr1 58198257 58198508 -184465845 + AluSx SINE Alu 45 295 -17 2234 86 3 13 chr1 58198508 58198811 -184465542 + AluSp SINE Alu 1 300 -13 1681 234 108 11 chr1 58198811 58199052 -184465301 + L1MB8 LINE L1 4630 4846 -1300 2329 66 0 10 chr1 58199052 58199356 -184464997 + AluY SINE Alu 1 301 -10 1681 234 108 11 chr1 58199356 58199635 -184464718 + L1MB8 LINE L1 4846 5200 -946 1837 147 0 0 chr1 58199635 58199928 -184464425 + AluSq SINE Alu 5 297 -16 454 0 0 0 chr1 58199935 58199986 -184464367 - U2 snRNA snRNA -132 56 6 1916 110 43 0 chr1 58199999 58200280 -184464073 + AluSx SINE Alu 1 293 -19 1880 123 29 16 chr1 58200289 58200417 -184463936 + AluSx SINE Alu 1 126 -186 2345 85 3 0 chr1 58200417 58200724 -184463629 + AluSp SINE Alu 1 308 -5 1880 123 29 16 chr1 58200724 58200903 -184463450 + AluSx SINE Alu 126 312 0 1201 163 73 4 chr1 58200929 58201162 -184463191 + L1MB8 LINE L1 5485 5733 -445 1927 133 0 23 chr1 58201167 58201467 -184462886 + AluSg SINE Alu 1 293 -17 945 221 117 40 chr1 58201484 58201783 -184462570 - MER21B LTR ERV1 -51 812 491 2371 217 61 30 chr1 58201787 58202409 -184461944 + MER21B LTR ERV1 212 852 -11 730 219 32 13 chr1 58202501 58202656 -184461697 - MER21B LTR ERV1 -685 178 21 2139 98 0 10 chr1 58202665 58202960 -184461393 - AluSx SINE Alu -14 298 7 226 89 0 89 chr1 58202992 58203037 -184461316 + L1MB8 LINE L1 5729 5769 -415 1376 150 154 0 chr1 58203051 58203304 -184461049 + AluJb SINE Alu 5 296 -16 2205 137 31 40 chr1 58203307 58203731 -184460622 + L1MB8 LINE L1 5758 6177 -1 2198 114 0 0 chr1 58203741 58204040 -184460313 + AluSq SINE Alu 1 299 -14 887 182 0 0 chr1 58204052 58204222 -184460131 + AluSg/x SINE Alu 137 306 -6 185 114 0 91 chr1 58204281 58204325 -184460028 - L3 LINE CR1 -35 1542 1503 364 171 18 90 chr1 58204350 58204461 -184459892 + L1MC5 LINE L1 6925 7027 -934 790 86 0 2 chr1 58204465 58204721 -184459632 + AluSq SINE Alu 5 311 -2 2042 120 6 16 chr1 58205079 58205395 -184458958 - AluSq SINE Alu 0 313 1 717 132 9 0 chr1 58205396 58205502 -184458851 - AluSg/x SINE Alu -14 295 189 1588 105 9 0 chr1 58205505 58205733 -184458620 - AluSx SINE Alu -82 230 1 184 333 76 0 chr1 58205736 58205802 -184458551 + L2 LINE L2 3000 3070 -202 264 299 207 29 chr1 58205841 58206015 -184458338 - MIR SINE MIR 0 262 58 339 311 128 43 chr1 58206022 58206257 -184458096 - MIR SINE MIR -1 261 7 1022 249 8 21 chr1 58206305 58206542 -184457811 - MIR SINE MIR -27 235 2 263 339 70 9 chr1 58206745 58206860 -184457493 - MIR SINE MIR -136 126 5 362 317 56 7 chr1 58207179 58207366 -184456987 - MIR SINE MIR -57 205 10 216 0 0 0 chr1 58207599 58207623 -184456730 + (A)n Simple_repeat Simple_repeat 1 24 0 905 92 130 92 chr1 58207990 58208098 -184456255 + MER30 DNA MER1_type 16 118 -112 2167 99 0 0 chr1 58208098 58208391 -184455962 + AluSg SINE Alu 1 293 -17 905 92 130 92 chr1 58208391 58208489 -184455864 + MER30 DNA MER1_type 118 230 0 279 197 268 35 chr1 58208489 58208631 -184455722 + MER2 DNA MER2_type 152 326 -19 259 250 111 0 chr1 58208655 58208727 -184455626 - MIR SINE MIR -49 213 134 648 205 74 0 chr1 58208856 58208978 -184455375 - FLAM_C SINE Alu -2 131 1 1802 142 7 20 chr1 58209004 58209307 -184455046 + AluJb SINE Alu 1 299 -13 2312 64 0 3 chr1 58210804 58211101 -184453252 + AluY SINE Alu 1 296 -15 2106 124 0 3 chr1 58211386 58211685 -184452668 + AluSx SINE Alu 1 298 -14 2032 115 3 0 chr1 58211688 58211974 -184452379 + AluSg SINE Alu 1 287 -23 5950 136 51 24 chr1 58212003 58213098 -184451255 + L1MC1 LINE L1 5220 6331 -2 3109 136 103 80 chr1 58213091 58213271 -184451082 + L1MB2 LINE L1 5425 5599 -572 * 2023 104 163 29 chr1 58213271 58213645 -184450708 - MSTA LTR MaLR 0 428 5 3109 136 103 80 chr1 58213645 58214025 -184450328 + L1MB2 LINE L1 5599 5969 -202 2075 134 0 0 chr1 58214025 58214330 -184450023 - AluJo SINE Alu -7 305 1 3109 136 103 80 chr1 58214330 58214453 -184449900 + L1MB2 LINE L1 5969 6129 -42 1642 106 0 0 chr1 58214453 58214679 -184449674 + AluSg/x SINE Alu 83 308 -2 3109 136 103 80 chr1 58214679 58214723 -184449630 + L1MB2 LINE L1 6129 6171 0 2061 108 34 0 chr1 58214908 58215204 -184449149 - AluSx SINE Alu -6 306 1 1957 128 0 3 chr1 58215239 58215528 -184448825 - AluJo SINE Alu -13 299 12 2276 86 3 0 chr1 58215593 58215885 -184448468 - AluSp SINE Alu -20 293 1 1984 100 20 27 chr1 58216373 58216673 -184447680 - AluSx SINE Alu -14 298 1 285 299 149 60 chr1 58216762 58217130 -184447223 - L2 LINE L2 -525 2789 2389 2135 54 37 37 chr1 58217387 58217685 -184446668 - AluY SINE Alu -13 298 1 470 241 66 15 chr1 58217855 58217992 -184446361 + MIR SINE MIR 46 189 -73 270 0 0 0 chr1 58218567 58218597 -184445756 + (TC)n Simple_repeat Simple_repeat 1 30 0 563 168 112 0 chr1 58218602 58218727 -184445626 + L1MA9 LINE L1 6152 6290 -22 346 262 56 9 chr1 58218945 58219052 -184445301 + L2 LINE L2 2970 3081 -191 1946 123 13 26 chr1 58219106 58219414 -184444939 - AluSx SINE Alu -6 306 3 604 164 9 36 chr1 58219420 58219530 -184444823 - FLAM_C SINE Alu -12 131 25 213 328 0 0 chr1 58219627 58219685 -184444668 + L2 LINE L2 3203 3260 -12 186 43 0 0 chr1 58219685 58219708 -184444645 + (GGGAA)n Simple_repeat Simple_repeat 3 25 0 389 257 40 59 chr1 58219808 58219960 -184444393 + MIR SINE MIR 99 247 -15 753 269 67 55 chr1 58219965 58220218 -184444135 + L3 LINE CR1 1261 1516 -61 219 320 41 31 chr1 58220313 58220410 -184443943 - L2 LINE L2 -24 3248 3151 278 296 74 19 chr1 58220468 58220591 -184443762 - MIR SINE MIR -67 141 28 495 258 172 19 chr1 58221034 58221243 -184443110 - MIR SINE MIR -2 260 20 1513 142 3 147 chr1 58221325 58221678 -184442675 + AluJo SINE Alu 1 302 0 2080 105 0 0 chr1 58221684 58221969 -184442384 + AluSq SINE Alu 1 285 -28 793 176 135 0 chr1 58222341 58222489 -184441864 + MER45A DNA AcHobo 2 169 -9 216 390 0 20 chr1 58222688 58222788 -184441565 + L3 LINE CR1 1297 1394 -183 206 231 0 0 chr1 58222859 58222898 -184441455 - MIR SINE MIR -17 245 207 1999 123 3 7 chr1 58222920 58223221 -184441132 + AluSx SINE Alu 1 300 -12 953 186 74 105 chr1 58223228 58223393 -184440960 + MIR SINE MIR 13 169 -93 1700 160 18 3 chr1 58223393 58223675 -184440678 + AluJb SINE Alu 1 286 -26 953 186 74 105 chr1 58223675 58223767 -184440586 + MIR SINE MIR 169 262 0 544 258 22 71 chr1 58223724 58223906 -184440447 - MIR SINE MIR -34 228 56 * 180 291 18 18 chr1 58223942 58223997 -184440356 + L2 LINE L2 3218 3272 0 1742 123 38 10 chr1 58224677 58224969 -184439384 + AluSp SINE Alu 1 300 -13 840 145 69 21 chr1 58224969 58225114 -184439239 + AluJb SINE Alu 134 285 -27 316 210 16 0 chr1 58225114 58225176 -184439177 + L1MC4 LINE L1 6641 6703 -1339 447 209 36 93 chr1 58225339 58225416 -184438937 - MIR SINE MIR 0 262 195 2108 93 3 7 chr1 58225416 58225725 -184438628 + AluSx SINE Alu 1 312 0 447 209 36 93 chr1 58225725 58225786 -184438567 - MIR SINE MIR -67 195 132 2189 88 10 0 chr1 58226152 58226446 -184437907 - AluSp SINE Alu -16 297 1 680 186 9 0 chr1 58226481 58226594 -184437759 + MER81 DNA DNA 1 114 0 1928 129 3 28 chr1 58226964 58227282 -184437071 - AluSx SINE Alu -2 310 1 2161 110 0 0 chr1 58227879 58228178 -184436175 - AluSx SINE Alu -11 301 3 184 221 143 52 chr1 58228212 58228289 -184436064 + L2 LINE L2 3169 3252 -20 850 106 8 0 chr1 58228298 58228421 -184435932 + FLAM_C SINE Alu 11 134 -9 406 278 52 72 chr1 58228985 58229179 -184435174 - L2 LINE L2 -93 3179 2990 270 327 85 36 chr1 58229633 58229798 -184434555 + MIR3 SINE MIR 32 204 -4 466 271 114 12 chr1 58229849 58230015 -184434338 + MIR SINE MIR 14 196 -66 396 138 0 0 chr1 58230026 58230091 -184434262 + (ATGGTG)n Simple_repeat Simple_repeat 4 68 0 303 167 211 11 chr1 58230330 58230420 -184433933 + MIR SINE MIR 75 182 -80 230 200 100 0 chr1 58230426 58230486 -184433867 + LTR67 LTR ERVL 2 67 -490 325 195 0 161 chr1 58230778 58230896 -184433457 + LTR67 LTR ERVL 459 557 0 288 246 72 0 chr1 58230991 58231060 -184433293 - MIR SINE MIR -80 128 55 198 0 0 0 chr1 58231087 58231109 -184433244 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2008 117 0 0 chr1 58231109 58231392 -184432961 - AluSx SINE Alu -29 283 1 202 222 173 12 chr1 58231513 58231594 -184432759 - MIR SINE MIR -85 123 30 1588 137 4 0 chr1 58232523 58232764 -184431589 + AluJb SINE Alu 51 292 -20 2209 72 0 20 chr1 58232770 58232903 -184431450 + AluY SINE Alu 5 139 -172 2384 57 0 10 chr1 58232903 58233204 -184431149 + AluSp SINE Alu 1 298 -15 2209 72 0 20 chr1 58233204 58233374 -184430979 + AluY SINE Alu 139 302 -9 28 0 0 0 chr1 58233374 58233402 -184430951 + AT_rich Low_complexity Low_complexity 1 28 0 2312 91 0 0 chr1 58233767 58234076 -184430277 - AluSq SINE Alu -4 309 1 297 287 33 27 chr1 58234189 58234332 -184430021 + MIR SINE MIR 7 153 -62 345 359 35 14 chr1 58234665 58234810 -184429543 + L2 LINE L2 3102 3249 -23 1818 139 0 20 chr1 58234909 58235232 -184429121 + AluSx SINE Alu 5 312 0 2253 78 0 3 chr1 58235510 58235806 -184428547 - AluSx SINE Alu -17 295 1 464 308 70 53 chr1 58236318 58236665 -184427688 + L2 LINE L2 2722 3072 -200 1051 128 27 27 chr1 58237414 58237601 -184426752 + MER5A DNA MER1_type 3 189 0 266 322 227 26 chr1 58237889 58238193 -184426160 + L2 LINE L2 2890 3254 -18 1291 151 179 16 chr1 58238226 58238477 -184425876 + AluJo SINE Alu 1 292 -10 234 0 0 0 chr1 58238509 58238535 -184425818 + (CCA)n Simple_repeat Simple_repeat 1 26 0 640 258 148 4 chr1 58238903 58239132 -184425221 - MIR SINE MIR 0 262 1 2007 94 0 52 chr1 58239214 58239522 -184424831 + AluSx SINE Alu 1 292 -20 479 153 0 0 chr1 58239600 58239685 -184424668 + AluJ/FRAM SINE Alu 223 307 -5 276 218 28 133 chr1 58239687 58239930 -184424423 + MIR3 SINE MIR 21 207 -1 1698 157 0 0 chr1 58239933 58240201 -184424152 - AluSx SINE Alu -44 268 1 2024 126 0 7 chr1 58240393 58240686 -184423667 - AluSx SINE Alu -21 291 1 891 131 0 0 chr1 58240686 58240816 -184423537 - AluSq/x SINE Alu -177 135 6 2140 103 0 10 chr1 58240995 58241297 -184423056 - AluSg SINE Alu -11 299 1 1805 164 0 10 chr1 58241402 58241712 -184422641 - AluJb SINE Alu -4 308 2 2109 120 0 0 chr1 58241885 58242184 -184422169 - AluSx SINE Alu -13 299 1 913 99 42 35 chr1 58242364 58242506 -184421847 + FLAM_C SINE Alu 1 143 0 414 139 56 14 chr1 58242831 58242903 -184421450 + MER5A DNA MER1_type 55 129 -60 453 51 26 13 chr1 58242905 58242983 -184421370 + (TG)n Simple_repeat Simple_repeat 2 80 0 368 107 36 0 chr1 58243083 58243139 -184421214 + MER82 DNA MER2_type 190 247 -406 2025 151 0 19 chr1 58243172 58243490 -184420863 + AluSx SINE Alu 1 312 0 1128 253 28 21 chr1 58243490 58243775 -184420578 + MER82 DNA MER2_type 364 650 -3 225 0 0 0 chr1 58243776 58243801 -184420552 + (TG)n Simple_repeat Simple_repeat 2 26 0 1161 174 28 0 chr1 58244024 58244236 -184420117 - MER20 DNA MER1_type -1 218 1 395 284 95 5 chr1 58244351 58244562 -184419791 - L1M4 LINE L1 -1443 4703 4474 1756 166 3 7 chr1 58244585 58244897 -184419456 + AluJb SINE Alu 1 311 0 2477 87 0 0 chr1 58245247 58245557 -184418796 - AluY SINE Alu -1 310 1 2224 104 3 0 chr1 58245561 58245850 -184418503 - AluSx SINE Alu -22 290 1 371 277 54 8 chr1 58246148 58246278 -184418075 + MIR SINE MIR 29 164 -98 414 195 0 0 chr1 58246326 58246413 -184417940 + CT-rich Low_complexity Low_complexity 3 89 0 2383 89 7 0 chr1 58246413 58246716 -184417637 - AluSg SINE Alu -5 305 1 26 0 0 0 chr1 58247539 58247565 -184416788 + AT_rich Low_complexity Low_complexity 1 26 0 1926 118 34 27 chr1 58247565 58247861 -184416492 + AluSx SINE Alu 1 298 -14 1839 179 0 3 chr1 58248167 58248463 -184415890 - AluJb SINE Alu -11 301 7 764 162 0 8 chr1 58248512 58248629 -184415724 - FLAM_C SINE Alu -25 118 3 3819 194 71 14 chr1 58248792 58249567 -184414786 - MER21B LTR ERV1 -24 839 21 285 225 67 22 chr1 58249568 58249657 -184414696 - MER21B LTR ERV1 -758 105 13 490 139 13 13 chr1 58249728 58249807 -184414546 - AluS SINE Alu -233 80 2 2063 130 0 3 chr1 58250200 58250492 -184413861 + AluJb SINE Alu 1 291 -21 1878 101 52 4 chr1 58250765 58251033 -184413320 - AluSg SINE Alu -29 281 1 206 287 43 21 chr1 58251074 58251168 -184413185 + MIR SINE MIR 89 184 -78 245 221 8 131 chr1 58252603 58252725 -184411628 + L2 LINE L2 2942 3048 -224 1040 126 0 7 chr1 58252729 58252880 -184411473 - FRAM SINE Alu -7 169 20 380 248 248 0 chr1 58253759 58253904 -184410449 - MER5A DNA MER1_type 0 189 9 434 218 136 86 chr1 58254135 58254378 -184409975 - L1ME3A LINE L1 -220 5950 5696 2303 88 3 3 chr1 58254379 58254673 -184409680 - AluSp SINE Alu -19 294 1 1534 162 3 99 chr1 58254682 58255015 -184409338 - AluJo SINE Alu -1 301 1 956 162 20 35 chr1 58255029 58255227 -184409126 - L1MB7 LINE L1 0 6184 5990 462 267 5 36 chr1 58255229 58255450 -184408903 - L1M4 LINE L1 -2853 3293 3080 267 284 74 70 chr1 58255551 58255734 -184408619 - L1MEd LINE L1 -5856 263 77 1981 140 25 0 chr1 58255734 58256019 -184408334 + AluSc SINE Alu 1 292 -17 267 284 74 70 chr1 58256019 58256092 -184408261 - L1MEd LINE L1 -6042 77 6 185 333 40 0 chr1 58256098 58256173 -184408180 + L2 LINE L2 3186 3263 -9 511 206 16 0 chr1 58257002 58257128 -184407225 + L2 LINE L2 1283 1410 -1904 399 102 0 17 chr1 58257131 58257190 -184407163 + AluJb SINE Alu 85 142 -160 2084 127 0 3 chr1 58257190 58257473 -184406880 + AluSx SINE Alu 1 282 -30 429 246 0 0 chr1 58257483 58257601 -184406752 + (TA)n Simple_repeat Simple_repeat 1 118 0 234 296 99 0 chr1 58257609 58257690 -184406663 - L1MC4 LINE L1 -1340 6702 6614 1051 175 0 6 chr1 58257694 58257871 -184406482 + AluJb SINE Alu 136 311 -1 1023 282 58 21 chr1 58257878 58258254 -184406099 + L2 LINE L2 1405 1794 -1520 2316 105 0 0 chr1 58258255 58258550 -184405803 + AluSx SINE Alu 1 295 -17 1605 146 0 126 chr1 58258561 58258903 -184405450 + AluJo SINE Alu 1 299 -3 869 167 11 61 chr1 58258921 58259101 -184405252 + FRAM SINE Alu 1 163 -13 1506 155 0 88 chr1 58259101 58259430 -184404923 + AluJb SINE Alu 12 314 0 224 320 188 0 chr1 58259691 58259819 -184404534 + MIR SINE MIR 54 205 -57 306 240 31 108 chr1 58259833 58259962 -184404391 - MER5A DNA MER1_type 0 189 71 1889 173 0 3 chr1 58259965 58260265 -184404088 - AluJb SINE Alu -13 299 1 1782 118 55 7 chr1 58260325 58260617 -184403736 - AluSx SINE Alu 0 305 1 730 184 158 13 chr1 58260711 58260863 -184403490 + FAM SINE Alu 1 174 -11 705 197 8 0 chr1 58260982 58261104 -184403249 - FLAM_C SINE Alu -10 133 11 2219 114 3 0 chr1 58261692 58261989 -184402364 + AluSx SINE Alu 1 298 -14 291 382 43 26 chr1 58262237 58262470 -184401883 + L2 LINE L2 2842 3078 -194 185 367 13 0 chr1 58262520 58262599 -184401754 + L2 LINE L2 3193 3272 0 989 211 107 44 chr1 58262743 58263061 -184401292 + L1MC5 LINE L1 7084 7421 -540 731 168 8 15 chr1 58263061 58263192 -184401161 + AluJo SINE Alu 6 135 -177 406 178 25 34 chr1 58263197 58263315 -184401038 + L1MC5 LINE L1 7410 7526 -435 320 179 18 0 chr1 58263393 58263449 -184400904 + AluS SINE Alu 1 57 -244 240 273 50 10 chr1 58263638 58263737 -184400616 - MIR SINE MIR -6 256 154 1845 57 0 0 chr1 58263737 58263948 -184400405 - AluY SINE Alu -100 211 1 327 251 53 64 chr1 58263956 58264143 -184400210 + L1ME4a LINE L1 5834 6018 -103 1657 163 0 4 chr1 58264221 58264485 -184399868 - AluJb SINE Alu -4 308 46 1464 257 59 12 chr1 58264489 58264898 -184399455 + LTR16C LTR ERVL 64 491 0 343 327 101 31 chr1 58265231 58265488 -184398865 + L3 LINE CR1 1265 1539 -38 328 299 174 7 chr1 58265576 58265720 -184398633 + MIR SINE MIR 25 192 -70 255 312 0 0 chr1 58266419 58266496 -184397857 + L2 LINE L2 3190 3266 -6 297 312 51 29 chr1 58266531 58266669 -184397684 + MIR3 SINE MIR 8 148 -60 203 309 32 32 chr1 58266723 58266817 -184397536 + MIR SINE MIR 53 146 -62 294 309 130 6 chr1 58266830 58266992 -184397361 - MIR SINE MIR -15 247 66 234 269 64 0 chr1 58267046 58267124 -184397229 - MIR SINE MIR -114 148 66 234 269 64 0 chr1 58267178 58267256 -184397097 - MIR SINE MIR -114 148 66 1341 204 101 171 chr1 58267396 58268176 -184396177 + LTR8 LTR ERV1 1 726 -1 303 290 93 19 chr1 58268179 58268277 -184396076 + L2 LINE L2 3139 3247 -25 240 86 0 0 chr1 58268277 58268312 -184396041 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 326 232 0 0 chr1 58268625 58268694 -184395659 - L3 LINE CR1 -108 1469 1401 225 284 0 0 chr1 58268981 58269048 -184395305 + L2 LINE L2 3204 3270 -2 21 36 0 0 chr1 58269798 58269826 -184394527 + GC_rich Low_complexity Low_complexity 1 28 0 1498 183 134 51 chr1 58271718 58271775 -184392578 - Charlie4a DNA MER1_type -1477 484 433 2227 96 43 10 chr1 58271775 58272077 -184392276 - AluSx SINE Alu 0 312 1 1498 183 134 51 chr1 58272077 58272451 -184391902 - Charlie4a DNA MER1_type -1528 433 17 507 251 117 12 chr1 58272564 58272735 -184391618 - MIR SINE MIR -11 251 63 1526 141 178 19 chr1 58272948 58273217 -184391136 + AluJo SINE Alu 1 312 0 278 196 43 43 chr1 58273227 58273319 -184391034 - L1ME4a LINE L1 -22 6099 6008 334 179 0 0 chr1 58273365 58273421 -184390932 - MIR SINE MIR -118 144 89 257 196 39 0 chr1 58274266 58274317 -184390036 + MER66B LTR ERV1 292 344 -142 205 186 0 0 chr1 58274320 58274363 -184389990 + A-rich Low_complexity Low_complexity 1 43 0 467 287 55 17 chr1 58274500 58274737 -184389616 - L1ME4a LINE L1 -222 5948 5703 2383 76 3 0 chr1 58274775 58275063 -184389290 + AluSx SINE Alu 1 289 -23 1233 180 0 5 chr1 58275088 58275299 -184389054 + AluJb SINE Alu 84 293 -19 2164 244 26 24 chr1 58275304 58275887 -184388466 - L1ME1 LINE L1 -5 6161 5578 1022 148 11 63 chr1 58275887 58276076 -184388277 + AluJo SINE Alu 87 265 -47 222 128 0 0 chr1 58276085 58276124 -184388229 + (GAAA)n Simple_repeat Simple_repeat 4 42 0 1343 97 6 0 chr1 58276257 58276433 -184387920 - AluSp SINE Alu -16 297 121 1595 180 7 7 chr1 58276636 58276930 -184387423 + AluJo SINE Alu 14 307 -5 22 56 0 0 chr1 58276949 58276985 -184387368 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr1 58277241 58277261 -184387092 + (ATTG)n Simple_repeat Simple_repeat 3 22 0 1475 161 47 47 chr1 58277264 58277543 -184386810 - AluJo SINE Alu -33 279 1 1708 79 0 9 chr1 58277933 58278149 -184386204 - AluSq SINE Alu -18 295 82 2062 108 3 27 chr1 58278149 58278444 -184385909 - AluSc SINE Alu -20 289 1 1949 148 3 3 chr1 58278819 58279123 -184385230 + AluJb SINE Alu 1 304 -8 295 238 153 54 chr1 58279139 58279362 -184384991 + L2 LINE L2 3050 3294 -19 185 184 0 0 chr1 58279582 58279620 -184384733 + L2 LINE L2 2927 2964 -350 2332 104 0 7 chr1 58279623 58279931 -184384422 - AluSx SINE Alu -6 306 1 1010 170 6 0 chr1 58280058 58280223 -184384130 - FRAM SINE Alu 0 166 1 1505 207 3 11 chr1 58280293 58280609 -184383744 + AluJo SINE Alu 1 314 0 381 211 13 0 chr1 58280747 58280823 -184383530 + MER5A DNA MER1_type 1 77 -112 2002 145 3 0 chr1 58280825 58281108 -184383245 + AluJb SINE Alu 12 295 -17 1369 95 0 0 chr1 58281130 58281298 -184383055 - AluSg/x SINE Alu -78 232 65 1976 163 46 3 chr1 58281582 58281932 -184382421 + MLT1A1 LTR MaLR 1 365 0 1676 173 14 11 chr1 58282366 58282649 -184381704 + AluJo SINE Alu 3 286 -26 241 324 17 29 chr1 58283759 58283932 -184380421 + GA-rich Low_complexity Low_complexity 3 173 0 214 158 0 0 chr1 58284410 58284448 -184379905 + (CAG)n Simple_repeat Simple_repeat 3 40 0 1639 261 95 68 chr1 58284648 58284965 -184379388 + L2 LINE L2 528 835 -2479 2596 73 0 0 chr1 58284965 58285278 -184379075 - AluSq SINE Alu 0 313 1 1639 261 95 68 chr1 58285278 58285956 -184378397 + L2 LINE L2 835 1550 -1764 437 129 144 29 chr1 58285960 58286099 -184378254 - MER5C DNA MER1_type -6 318 164 1200 136 0 55 chr1 58286107 58286193 -184378160 - L1MB3 LINE L1 -45 6138 6049 1606 182 7 21 chr1 58286193 58286517 -184377836 - AluJo SINE Alu 0 320 1 1200 136 0 55 chr1 58286517 58286649 -184377704 - L1MB3 LINE L1 -134 6049 5931 533 241 76 0 chr1 58286652 58286797 -184377556 - MER5C DNA MER1_type -164 160 5 344 231 75 34 chr1 58286801 58286948 -184377405 + L2 LINE L2 1557 1709 -1605 632 73 0 0 chr1 58286958 58287040 -184377313 + AluSg/x SINE Alu 214 295 -14 1584 257 134 0 chr1 58287042 58287126 -184377227 + L2 LINE L2 1712 1783 -1531 1970 158 0 0 chr1 58287126 58287405 -184376948 - AluJb SINE Alu -33 279 1 1584 257 134 0 chr1 58287405 58287864 -184376489 + L2 LINE L2 1783 2328 -986 258 275 0 0 chr1 58287915 58287984 -184376369 - MLT1L LTR MaLR -419 196 128 2263 118 0 10 chr1 58288058 58288371 -184375982 + AluSg SINE Alu 1 310 0 1647 175 34 7 chr1 58288386 58288678 -184375675 + AluJb SINE Alu 1 300 -12 959 102 16 0 chr1 58288954 58289081 -184375272 + AluSq/x SINE Alu 4 132 -181 1841 112 83 4 chr1 58289084 58289362 -184374991 + AluSg1 SINE Alu 1 300 -9 2670 48 0 6 chr1 58289362 58289674 -184374679 + AluY SINE Alu 1 311 0 2919 16 0 0 chr1 58289684 58290001 -184374352 + AluYb8 SINE Alu 2 318 0 2102 110 33 0 chr1 58290098 58290398 -184373955 + AluSg SINE Alu 1 310 0 1520 267 75 38 chr1 58290567 58290996 -184373357 + L1MC4a LINE L1 5293 5753 -2055 1311 211 36 36 chr1 58290996 58291304 -184373049 - AluJo SINE Alu -4 308 1 1520 267 75 38 chr1 58291304 58291488 -184372865 + L1MC4a LINE L1 5753 5929 -1879 1169 147 0 0 chr1 58291649 58291826 -184372527 - AluSg/x SINE Alu -2 310 134 2260 128 0 0 chr1 58291826 58292132 -184372221 - AluSx SINE Alu -6 306 1 1048 169 6 0 chr1 58292268 58292428 -184371925 - AluJb SINE Alu -19 293 133 531 97 21 54 chr1 58292444 58292537 -184371816 + AluS SINE Alu 5 91 -221 204 40 0 0 chr1 58292679 58292704 -184371649 + (T)n Simple_repeat Simple_repeat 1 25 0 32 35 0 18 chr1 58292844 58292881 -184371472 + AT_rich Low_complexity Low_complexity 1 38 -18 2140 135 0 3 chr1 58292881 58293184 -184371169 - AluSx SINE Alu -10 302 1 32 35 0 18 chr1 58293184 58293203 -184371150 + AT_rich Low_complexity Low_complexity 38 56 0 184 42 0 0 chr1 58293272 58293296 -184371057 + (TTTTA)n Simple_repeat Simple_repeat 2 80 0 2234 113 0 0 chr1 58293296 58293580 -184370773 - AluSq SINE Alu -29 284 1 835 211 87 11 chr1 58293833 58294018 -184370335 - MER58A DNA MER1_type -16 208 10 249 33 0 0 chr1 58294134 58294164 -184370189 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1028 216 51 28 chr1 58294300 58294554 -184369799 - MIR SINE MIR -2 260 1 551 266 16 52 chr1 58294633 58294740 -184369613 - MIR SINE MIR 0 262 164 2136 117 3 0 chr1 58294740 58295051 -184369302 - AluSq SINE Alu 0 313 1 551 266 16 52 chr1 58295051 58295135 -184369218 - MIR SINE MIR -98 164 78 902 114 0 23 chr1 58295135 58295267 -184369086 + AluSq/x SINE Alu 1 129 -183 1118 107 107 6 chr1 58295367 58295544 -184368809 + AluSq SINE Alu 100 294 -19 234 265 59 44 chr1 58295544 58295612 -184368741 - MIR SINE MIR -181 81 13 195 321 54 0 chr1 58295667 58295723 -184368630 - MIR SINE MIR -192 70 12 500 127 16 48 chr1 58295884 58296010 -184368343 + CT-rich Low_complexity Low_complexity 3 124 0 2380 86 0 3 chr1 58296023 58296327 -184368026 - AluSc SINE Alu -6 303 1 397 364 65 46 chr1 58296510 58296771 -184367582 - L2 LINE L2 -6 3266 3001 1626 259 83 15 chr1 58296799 58297110 -184367243 + L2 LINE L2 2450 2739 -574 2404 107 112 5 chr1 58297110 58297495 -184366858 + MSTA LTR MaLR 1 426 -2 1626 259 83 15 chr1 58297495 58297983 -184366370 + L2 LINE L2 2739 3313 0 400 161 0 0 chr1 58298592 58298648 -184365705 + AluS SINE Alu 2 57 -254 625 81 58 12 chr1 58298923 58299095 -184365258 + (TA)n Simple_repeat Simple_repeat 1 180 0 646 71 71 12 chr1 58299108 58299606 -184364747 + (TA)n Simple_repeat Simple_repeat 1 527 0 2406 55 0 7 chr1 58299606 58299897 -184364456 - AluY SINE Alu -22 289 1 26 0 0 0 chr1 58299900 58299926 -184364427 + AT_rich Low_complexity Low_complexity 1 26 0 1648 176 13 17 chr1 58299928 58300229 -184364124 + AluJb SINE Alu 1 300 -12 256 280 108 11 chr1 58300303 58300396 -184363957 + MIR SINE MIR 20 121 -87 1752 182 14 0 chr1 58300421 58300712 -184363641 + AluJb SINE Alu 1 295 -17 2304 108 0 0 chr1 58301294 58301601 -184362752 + AluY SINE Alu 1 307 -4 1829 133 37 20 chr1 58301602 58301902 -184362451 + AluSg SINE Alu 1 305 -5 277 261 261 14 chr1 58301944 58302082 -184362271 + MIR SINE MIR 20 191 -71 1743 192 0 0 chr1 58302090 58302377 -184361976 + AluJo SINE Alu 15 301 -11 2142 113 3 13 chr1 58302609 58302909 -184361444 + AluSx SINE Alu 1 297 -15 214 328 30 0 chr1 58303198 58303265 -184361088 + polypurine Low_complexity Low_complexity 1 69 0 264 336 41 16 chr1 58303396 58303518 -184360835 + MIR SINE MIR 34 158 -104 632 181 69 0 chr1 58304300 58304416 -184359937 + U4 snRNA snRNA 1 124 -21 2134 130 0 10 chr1 58304427 58304728 -184359625 - AluJb SINE Alu -4 308 11 255 125 0 0 chr1 58304771 58304811 -184359542 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 1835 87 0 0 chr1 58304885 58305115 -184359238 + AluY SINE Alu 60 289 -22 27 0 0 0 chr1 58305124 58305151 -184359202 + AT_rich Low_complexity Low_complexity 1 27 0 1065 140 0 0 chr1 58305156 58305401 -184358952 + (TA)n Simple_repeat Simple_repeat 1 245 0 26 0 0 0 chr1 58305524 58305550 -184358803 + AT_rich Low_complexity Low_complexity 1 26 0 887 151 30 6 chr1 58305552 58305718 -184358635 + AluSg/x SINE Alu 123 292 -20 1194 117 0 0 chr1 58305810 58305972 -184358381 - AluSg/x SINE Alu -17 295 134 2166 116 3 3 chr1 58305972 58306282 -184358071 - AluSg SINE Alu 0 310 1 8667 98 40 41 chr1 58306282 58306976 -184357377 - MER57B-int LTR ERV1 -918 6619 5925 2308 102 3 3 chr1 58306976 58307280 -184357073 + AluSp SINE Alu 1 304 -9 8667 98 40 41 chr1 58307280 58307293 -184357060 - MER57B-int LTR ERV1 -1612 5925 5913 2182 86 4 0 chr1 58307293 58307562 -184356791 + AluSq SINE Alu 23 292 -21 8667 98 40 41 chr1 58307562 58308168 -184356185 - MER57B-int LTR ERV1 -1624 5913 5307 1153 184 32 64 chr1 58308159 58308284 -184356069 - MER57B-int LTR ERV1 -1986 4277 4150 * 2464 82 0 0 chr1 58308284 58308590 -184355763 - AluSq SINE Alu -7 306 1 1153 184 32 64 chr1 58308590 58308746 -184355607 - MER57B-int LTR ERV1 -2113 4150 4005 364 71 54 0 chr1 58308775 58308831 -184355522 - MER57B-int LTR ERV1 -3725 2221 2163 * 966 123 12 8 chr1 58308803 58308965 -184355388 - MER57B-int LTR ERV1 -3929 2017 1514 1901 167 111 3 chr1 58308980 58309339 -184355014 - MER57B-int LTR ERV1 -4178 1768 1371 * 3507 141 37 9 chr1 58309329 58309413 -184354940 - MER57B-int LTR ERV1 -4810 1136 1056 2282 68 0 48 chr1 58309413 58309722 -184354631 + AluY SINE Alu 1 294 -17 3507 141 37 9 chr1 58309722 58310048 -184354305 - MER57B-int LTR ERV1 -4890 1056 740 2155 117 0 16 chr1 58310048 58310356 -184353997 + AluSx SINE Alu 1 303 -9 3507 141 37 9 chr1 58310356 58310685 -184353668 - MER57B-int LTR ERV1 -5206 740 288 * 4000 131 54 20 chr1 58310682 58311332 -184353021 - MER57B-int LTR ERV1 -6865 672 1 1304 130 10 0 chr1 58311332 58311532 -184352821 - MER57B LTR ERV1 0 434 233 2059 106 10 29 chr1 58311532 58311843 -184352510 + AluSx SINE Alu 1 305 -7 2210 107 3 22 chr1 58311847 58312165 -184352188 + AluSx SINE Alu 1 312 0 1993 123 14 3 chr1 58312620 58312904 -184351449 + AluSx SINE Alu 7 293 -19 1897 124 3 49 chr1 58313070 58313217 -184351136 + AluSx SINE Alu 1 128 -184 2078 129 14 0 chr1 58313217 58313512 -184350841 + AluSq SINE Alu 1 299 -14 1897 124 3 49 chr1 58313512 58313670 -184350683 + AluSx SINE Alu 128 292 -20 326 237 75 11 chr1 58313674 58313767 -184350586 - MIR SINE MIR -100 162 64 2135 96 3 54 chr1 58313824 58314137 -184350216 + AluSp SINE Alu 1 297 -16 606 156 46 37 chr1 58314156 58314265 -184350088 - FLAM_C SINE Alu -32 111 2 906 129 19 13 chr1 58314321 58314476 -184349877 - BC200 scRNA scRNA -43 157 2 2334 73 3 0 chr1 58314507 58314795 -184349558 + AluY SINE Alu 1 289 -22 27 0 0 0 chr1 58314804 58314831 -184349522 + AT_rich Low_complexity Low_complexity 1 27 0 1077 140 0 0 chr1 58314836 58315014 -184349339 + (TA)n Simple_repeat Simple_repeat 1 178 0 1125 99 0 0 chr1 58315028 58315170 -184349183 + AluSp/q SINE Alu 159 300 -13 183 184 0 0 chr1 58315180 58315218 -184349135 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 1757 170 0 26 chr1 58315307 58315618 -184348735 - AluJb SINE Alu -9 303 1 1768 167 0 27 chr1 58315671 58315971 -184348382 + AluJo SINE Alu 1 292 -20 2096 139 7 0 chr1 58316044 58316347 -184348006 + AluSx SINE Alu 1 305 -7 23 0 0 0 chr1 58316489 58316512 -184347841 + AT_rich Low_complexity Low_complexity 1 23 0 2465 85 3 0 chr1 58316524 58316829 -184347524 + AluSp SINE Alu 1 306 -7 693 130 19 28 chr1 58316829 58316927 -184347426 - U6 snRNA snRNA -8 99 1 318 183 60 10 chr1 58317070 58317169 -184347184 + L1ME LINE L1 5677 5778 -343 2159 126 10 3 chr1 58317264 58317573 -184346780 + AluSx SINE Alu 1 311 -1 1749 272 19 29 chr1 58317812 58318539 -184345814 - L1M3c LINE L1 -3329 2886 2203 28 0 0 0 chr1 58318539 58318567 -184345786 + AT_rich Low_complexity Low_complexity 1 28 0 2245 91 0 14 chr1 58318589 58318885 -184345468 - AluSg SINE Alu -18 292 1 897 105 8 0 chr1 58318891 58319015 -184345338 - AluSq/x SINE Alu -187 125 1 749 128 8 0 chr1 58319015 58319132 -184345221 - L1MA7 LINE L1 -46 6245 6128 1990 149 3 0 chr1 58319206 58319495 -184344858 - AluJb SINE Alu -12 300 11 1005 282 41 36 chr1 58319500 58319795 -184344558 - L1M3c LINE L1 -4516 1630 1455 2367 83 0 3 chr1 58319795 58320095 -184344258 + AluSq SINE Alu 1 299 -14 1005 282 41 36 chr1 58320095 58320256 -184344097 - L1M3c LINE L1 -4691 1455 1296 789 187 0 0 chr1 58320256 58320379 -184343974 - FLAM_C SINE Alu -19 124 2 1139 233 93 35 chr1 58320383 58320849 -184343504 - L1MEc LINE L1 -4961 1254 812 1433 172 34 4 chr1 58320871 58321138 -184343215 - L1MB3 LINE L1 -2 6181 5907 479 65 16 0 chr1 58321138 58321200 -184343153 - AluS SINE Alu -249 64 2 2297 170 12 3 chr1 58321201 58321673 -184342680 - L1MB3 LINE L1 -495 5688 5210 * 2345 233 71 38 chr1 58321671 58322434 -184341919 - L1MEc LINE L1 -5572 824 37 2101 131 7 0 chr1 58322467 58322772 -184341581 + AluSx SINE Alu 1 307 -5 353 245 14 48 chr1 58322811 58322958 -184341395 - L1MEc LINE L1 -4677 1719 1578 1618 244 45 106 chr1 58322959 58323201 -184341152 - L1MEc LINE L1 -5042 1354 1099 740 174 26 0 chr1 58323201 58323316 -184341037 - FLAM_C SINE Alu -15 118 1 1618 244 45 106 chr1 58323316 58323462 -184340891 - L1MEc LINE L1 -5297 1099 946 2314 72 7 3 chr1 58323462 58323754 -184340599 + AluY SINE Alu 1 293 -18 1618 244 45 106 chr1 58323754 58324095 -184340258 - L1MEc LINE L1 -5450 946 586 198 0 0 0 chr1 58324095 58324117 -184340236 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2209 106 0 7 chr1 58324125 58324418 -184339935 - AluSx SINE Alu -21 291 1 1494 143 0 0 chr1 58324425 58324674 -184339679 - AluSg/x SINE Alu 0 313 65 1618 244 45 106 chr1 58324674 58325049 -184339304 - L1MEc LINE L1 -5823 573 298 21 36 0 0 chr1 58325217 58325245 -184339108 + AT_rich Low_complexity Low_complexity 1 28 0 2183 108 3 0 chr1 58325737 58326034 -184338319 - AluSx SINE Alu -14 298 1 324 301 97 17 chr1 58326100 58326276 -184338077 - L2 LINE L2 -1 3312 3123 724 175 175 0 chr1 58326288 58326408 -184337945 + FRAM SINE Alu 1 141 -35 252 0 0 0 chr1 58326418 58326446 -184337907 + (CA)n Simple_repeat Simple_repeat 2 29 0 1903 134 18 3 chr1 58326589 58326873 -184337480 + AluSx SINE Alu 1 288 -24 804 179 0 8 chr1 58326933 58327067 -184337286 + AluJo/FLAM SINE Alu 1 133 -179 1565 173 56 4 chr1 58327068 58327367 -184336986 + AluJb SINE Alu 3 315 0 2408 48 0 10 chr1 58327367 58327678 -184336675 + AluY SINE Alu 1 311 0 2472 65 0 40 chr1 58328492 58328814 -184335539 - AluSq SINE Alu -4 309 1 1573 194 21 0 chr1 58329110 58329398 -184334955 - AluJb SINE Alu -18 294 1 510 17 0 0 chr1 58329478 58329537 -184334816 + (TA)n Simple_repeat Simple_repeat 2 60 0 2204 121 0 0 chr1 58329537 58329834 -184334519 - AluSx SINE Alu -15 297 1 1758 180 7 10 chr1 58329887 58330187 -184334166 + AluJb SINE Alu 1 299 -13 2032 113 53 0 chr1 58330491 58330773 -184333580 - AluSg SINE Alu -13 297 1 2165 108 3 3 chr1 58331202 58331497 -184332856 + AluSg SINE Alu 1 295 -15 2200 75 11 4 chr1 58331602 58331910 -184332443 - AluY SINE Alu 0 310 1 1838 143 0 4 chr1 58332061 58332327 -184332026 + AluSq SINE Alu 1 265 -48 482 90 20 150 chr1 58332331 58332431 -184331922 + AluJ/FRAM SINE Alu 217 303 -9 22 35 0 0 chr1 58332434 58332463 -184331890 + AT_rich Low_complexity Low_complexity 1 29 0 1877 147 39 0 chr1 58332512 58332797 -184331556 + AluSx SINE Alu 1 296 -16 953 140 0 79 chr1 58334867 58335031 -184329322 + AluJo SINE Alu 3 153 -159 2042 119 0 20 chr1 58335546 58335839 -184328514 + AluSx SINE Alu 5 291 -21 785 175 51 7 chr1 58335852 58335989 -184328364 - FRAM SINE Alu -14 162 20 2396 82 0 0 chr1 58336052 58336345 -184328008 + AluSg SINE Alu 1 293 -17 189 0 0 0 chr1 58337347 58337368 -184326985 + (A)n Simple_repeat Simple_repeat 1 21 0 818 162 0 0 chr1 58337377 58337494 -184326859 - FLAM_C SINE Alu -16 117 1 485 139 0 0 chr1 58339162 58339234 -184325119 - AluJo SINE Alu -7 305 234 974 153 13 6 chr1 58339236 58339393 -184324960 - AluJo SINE Alu -154 158 1 262 224 149 28 chr1 58339826 58339892 -184324461 - MIR3 SINE MIR -26 182 125 1252 146 221 4 chr1 58339892 58340146 -184324207 + AluJb SINE Alu 1 309 -3 262 224 149 28 chr1 58340146 58340186 -184324167 - MIR3 SINE MIR -83 125 63 2138 124 10 3 chr1 58340197 58340504 -184323849 - AluSx SINE Alu -3 309 1 801 92 143 0 chr1 58340725 58340844 -184323509 + AluSq/x SINE Alu 1 136 -177 1900 93 4 4 chr1 58340844 58341091 -184323262 + AluSg SINE Alu 1 247 -63 1911 154 3 3 chr1 58341215 58341500 -184322853 - AluSx SINE Alu -27 285 1 213 39 0 0 chr1 58341500 58341526 -184322827 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2165 132 3 0 chr1 58342508 58342819 -184321534 - AluSx SINE Alu 0 312 1 2169 135 0 0 chr1 58342821 58343125 -184321228 - AluSq SINE Alu -9 304 1 2902 3 0 0 chr1 58343266 58343570 -184320783 - AluYa5 SINE Alu -7 304 1 2087 125 10 7 chr1 58343573 58343878 -184320475 - AluSx SINE Alu -6 306 1 1964 149 10 13 chr1 58343880 58344188 -184320165 - AluSx SINE Alu -5 307 1 1879 138 57 14 chr1 58344205 58344578 -184319775 + MER41-int LTR ERV1 1482 3171 -2775 1879 80 140 27 chr1 58344581 58344881 -184319472 + MER51B LTR ERV1 44 377 0 2381 74 0 3 chr1 58344896 58345192 -184319161 + AluSc SINE Alu 5 299 -10 232 329 70 28 chr1 58345203 58345346 -184319007 + MIR SINE MIR 28 176 -86 615 291 57 13 chr1 58345439 58345666 -184318687 - MIR SINE MIR -8 254 18 369 0 0 0 chr1 58345998 58346026 -184318327 + (TG)n Simple_repeat Simple_repeat 1 69 0 369 0 0 0 chr1 58346026 58346067 -184318286 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 71 0 0 chr1 58346275 58346317 -184318036 + GC_rich Low_complexity Low_complexity 1 42 0 2468 71 0 3 chr1 58347282 58347592 -184316761 - AluSc SINE Alu 0 309 1 33 0 0 0 chr1 58348112 58348145 -184316208 + AT_rich Low_complexity Low_complexity 1 33 0 308 198 165 0 chr1 58348195 58348316 -184316037 - L1M4 LINE L1 -1637 4509 4369 380 123 0 33 chr1 58348325 58348396 -184315957 - Alu SINE Alu -253 47 1 410 232 56 32 chr1 58348410 58348535 -184315818 - L1M4 LINE L1 -1807 4339 4212 475 128 53 21 chr1 58348549 58348643 -184315710 - AluJo SINE Alu -176 136 40 697 227 32 5 chr1 58348655 58348840 -184315513 - L1ME LINE L1 -3653 2562 2373 2019 127 0 57 chr1 58348914 58349230 -184315123 - AluSx SINE Alu -14 298 1 25 31 0 0 chr1 58349230 58349262 -184315091 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr1 58349282 58349320 -184315033 + AT_rich Low_complexity Low_complexity 1 38 0 310 170 19 0 chr1 58349335 58349388 -184314965 - AluJo SINE Alu -22 280 227 946 160 120 0 chr1 58349388 58349563 -184314790 - AluJo SINE Alu -116 196 1 868 184 112 72 chr1 58349796 58349917 -184314436 + Charlie1 DNA MER1_type 2444 2559 -202 513 0 0 0 chr1 58349917 58349974 -184314379 + (TA)n Simple_repeat Simple_repeat 1 57 0 1981 123 43 0 chr1 58349974 58350245 -184314108 - AluSg SINE Alu -27 283 1 868 184 112 72 chr1 58350245 58350431 -184313922 + Charlie1 DNA MER1_type 2558 2759 -2 1577 84 70 0 chr1 58350474 58350688 -184313665 - AluY SINE Alu -18 293 65 2000 117 0 25 chr1 58350689 58350971 -184313382 - AluSg SINE Alu -35 275 1 1052 66 0 36 chr1 58350974 58351111 -184313242 - AluSp SINE Alu -181 132 1 427 215 74 44 chr1 58351111 58351246 -184313107 - L1ME LINE L1 -4651 1745 1607 2155 112 3 10 chr1 58351272 58351442 -184312911 - AluSg SINE Alu -7 303 133 435 19 0 0 chr1 58351442 58351494 -184312859 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2355 78 0 0 chr1 58351494 58351775 -184312578 - AluY SINE Alu -30 281 1 2155 112 3 10 chr1 58351775 58351908 -184312445 - AluSg SINE Alu -175 135 1 425 160 13 0 chr1 58352129 58352204 -184312149 - FLAM SINE Alu -28 115 40 229 0 0 0 chr1 58352207 58352235 -184312118 - Alu SINE Alu -172 131 104 1672 133 59 7 chr1 58352235 58352505 -184311848 + AluSx SINE Alu 29 312 0 2197 115 0 19 chr1 58352662 58352974 -184311379 - AluSc SINE Alu -3 306 1 2041 110 3 14 chr1 58352981 58353273 -184311080 - AluSx SINE Alu -23 289 1 2275 71 10 7 chr1 58353291 58353587 -184310766 - AluY SINE Alu -14 297 1 279 256 167 52 chr1 58353692 58353765 -184310588 - L1ME LINE L1 -5196 1009 946 1854 110 38 41 chr1 58353765 58353915 -184310438 - AluSc SINE Alu -19 290 140 2225 109 0 3 chr1 58353915 58354209 -184310144 - AluSg SINE Alu -13 297 5 1854 110 38 41 chr1 58354209 58354349 -184310004 - AluSc SINE Alu -169 140 1 279 256 167 52 chr1 58354349 58354623 -184309730 - L1ME LINE L1 -5259 946 755 1697 161 13 33 chr1 58354639 58354938 -184309415 - AluJb SINE Alu -19 293 1 2084 135 0 7 chr1 58354990 58355294 -184309059 - AluSx SINE Alu -9 303 2 1981 138 0 10 chr1 58355300 58355510 -184308843 - AluSg SINE Alu 0 341 134 2255 97 0 7 chr1 58355510 58355809 -184308544 - AluSg SINE Alu -13 297 1 1981 138 0 10 chr1 58355809 58355942 -184308411 - AluSg SINE Alu -207 134 1 1615 152 59 17 chr1 58355964 58356253 -184308100 - AluSx SINE Alu -11 301 1 2324 144 106 11 chr1 58356284 58356728 -184307625 - Tigger5 DNA MER2_type -7 2316 1831 937 142 35 0 chr1 58356720 58356861 -184307492 - Tigger5 DNA MER2_type -2102 221 76 * 236 367 51 0 chr1 58357086 58357184 -184307169 + L2 LINE L2 3121 3223 -49 1510 177 37 14 chr1 58357224 58357518 -184306835 + AluJb SINE Alu 1 301 -11 1467 175 98 7 chr1 58357558 58357855 -184306498 - MER2 DNA MER2_type -21 324 1 243 275 101 18 chr1 58358356 58358465 -184305888 - HAL1 LINE L1 -2232 275 158 2130 113 20 0 chr1 58358465 58358758 -184305595 - AluSq SINE Alu -14 299 1 24 0 0 0 chr1 58358879 58358903 -184305450 + AT_rich Low_complexity Low_complexity 1 24 0 1298 105 0 12 chr1 58358904 58359075 -184305278 - AluSx SINE Alu -143 169 1 2645 152 56 123 chr1 58359082 58359799 -184304554 - L1MB7 LINE L1 -120 6064 5396 1053 90 56 7 chr1 58359914 58360058 -184304295 + AluSg/x SINE Alu 149 299 -13 372 100 17 0 chr1 58360083 58360143 -184304210 - MIR SINE MIR -56 152 92 519 258 129 22 chr1 58360256 58360481 -184303872 + MIR SINE MIR 14 262 0 199 358 37 0 chr1 58361357 58361438 -184302915 - L2 LINE L2 -1 3271 3188 995 121 0 0 chr1 58361535 58361667 -184302686 - AluSp SINE Alu -181 132 1 1995 87 72 4 chr1 58361695 58361972 -184302381 + AluSq SINE Alu 1 296 -17 899 89 0 0 chr1 58362096 58362208 -184302145 - L1P LINE L1 -1986 4160 4049 825 65 9 19 chr1 58362208 58362316 -184302037 - AluSq/x SINE Alu -205 107 1 2255 98 0 7 chr1 58362331 58362626 -184301727 - AluSp SINE Alu -20 293 1 198 0 0 0 chr1 58362769 58362791 -184301562 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 490 147 27 0 chr1 58362791 58362866 -184301487 - AluSg/x SINE Alu -23 286 210 428 101 0 43 chr1 58362886 58362955 -184301398 - Alu SINE Alu -22 288 223 1465 214 51 11 chr1 58362959 58363046 -184301307 - L1M4 LINE L1 -1243 4903 4821 2425 83 0 0 chr1 58363046 58363346 -184301007 - AluY SINE Alu -11 300 1 1465 214 51 11 chr1 58363346 58363379 -184300974 - L1M4 LINE L1 -1325 4821 4791 2389 100 0 3 chr1 58363379 58363690 -184300663 - AluSx SINE Alu -2 310 1 1465 214 51 11 chr1 58363690 58363924 -184300429 - L1M4 LINE L1 -1355 4791 4534 755 154 0 0 chr1 58363941 58364058 -184300295 - FLAM_C SINE Alu -25 118 2 240 222 56 0 chr1 58364061 58364133 -184300220 - L1M4 LINE L1 -1608 4538 4463 1324 99 6 0 chr1 58364136 58364308 -184300045 - AluSq SINE Alu -140 173 1 1965 82 23 12 chr1 58365160 58365417 -184298936 + AluSc SINE Alu 29 288 -21 1435 159 0 122 chr1 58365481 58365638 -184298715 + AluJo SINE Alu 1 175 -137 2308 94 7 7 chr1 58365638 58365936 -184298417 + AluSx SINE Alu 1 298 -14 1435 159 0 122 chr1 58365936 58366015 -184298338 + AluJo SINE Alu 175 185 -127 2415 65 0 10 chr1 58366015 58366324 -184298029 - AluY SINE Alu -4 307 2 1435 159 0 122 chr1 58366324 58366431 -184297922 + AluJo SINE Alu 185 303 -9 1311 153 0 31 chr1 58366485 58366714 -184297639 - AluJo SINE Alu -5 307 86 397 247 0 0 chr1 58367443 58367532 -184296821 - MIR SINE MIR -66 142 54 1914 91 0 0 chr1 58367959 58368200 -184296153 - AluSg SINE Alu -12 298 58 1961 113 10 30 chr1 58368364 58368664 -184295689 - AluY SINE Alu -17 294 1 1876 113 82 0 chr1 58368672 58368954 -184295399 - AluSx SINE Alu -7 305 1 1618 260 63 20 chr1 58368978 58369644 -184294709 + L1ME1 LINE L1 5191 6126 -40 2672 46 0 0 chr1 58369647 58369950 -184294403 - AluY SINE Alu -8 303 1 240 264 28 28 chr1 58370452 58370524 -184293829 + MIR SINE MIR 3 74 -188 208 200 31 0 chr1 58370642 58370707 -184293646 + (TTTA)n Simple_repeat Simple_repeat 1 67 0 709 236 79 46 chr1 58371606 58371668 -184292685 - HAL1 LINE L1 -104 2403 2344 2528 71 3 0 chr1 58371668 58371977 -184292376 - AluSg SINE Alu 0 310 1 709 236 79 46 chr1 58371977 58372194 -184292159 - HAL1 LINE L1 -163 2344 2115 2054 127 3 26 chr1 58372213 58372520 -184291833 + AluSc SINE Alu 1 300 -9 27 49 0 0 chr1 58372541 58372582 -184291771 + AT_rich Low_complexity Low_complexity 1 41 0 1755 141 28 0 chr1 58372585 58372840 -184291513 - AluSg SINE Alu -48 262 1 305 242 84 11 chr1 58372840 58372935 -184291418 - L1M LINE L1 -2437 5371 5270 * 317 318 20 35 chr1 58372906 58372959 -184291394 - L1M4 LINE L1 -814 5332 5280 10081 28 0 199 chr1 58372959 58374681 -184289672 - SVA Other Other -2 1384 5 317 318 20 35 chr1 58374681 58374828 -184289525 - L1M4 LINE L1 -866 5280 5135 413 258 42 0 chr1 58374904 58375024 -184289329 - FAM SINE Alu -6 43 1 1296 114 91 5 chr1 58375266 58375476 -184288877 - AluSg/x SINE Alu -9 301 74 226 290 94 22 chr1 58375504 58375642 -184288711 - L1M4 LINE L1 -1450 4696 4549 1829 123 86 7 chr1 58375906 58376175 -184288178 - AluSx SINE Alu -21 291 2 5182 122 86 99 chr1 58376175 58376371 -184287982 + Tigger1 DNA MER2_type 1298 1495 -923 2160 143 0 6 chr1 58376371 58376685 -184287668 + AluSx SINE Alu 1 312 0 5182 122 86 99 chr1 58376685 58376818 -184287535 + Tigger1 DNA MER2_type 1495 1628 -790 1732 174 28 3 chr1 58376818 58377100 -184287253 + AluJb SINE Alu 9 297 -15 5182 122 86 99 chr1 58377100 58377476 -184286877 + Tigger1 DNA MER2_type 1628 2007 -411 2435 90 6 0 chr1 58377476 58377787 -184286566 + AluSq SINE Alu 1 313 0 5182 122 86 99 chr1 58377787 58378028 -184286325 + Tigger1 DNA MER2_type 2007 2250 -168 1601 179 3 30 chr1 58378028 58378324 -184286029 - AluJo SINE Alu -24 288 1 5182 122 86 99 chr1 58378324 58378357 -184285996 + Tigger1 DNA MER2_type 2250 2282 -136 2200 104 7 0 chr1 58378357 58378646 -184285707 + AluSx SINE Alu 1 291 -21 5182 122 86 99 chr1 58378646 58378798 -184285555 + Tigger1 DNA MER2_type 2282 2418 0 858 269 215 17 chr1 58378815 58379451 -184284902 - L2 LINE L2 -1217 2097 1336 199 314 16 41 chr1 58379494 58379615 -184284738 - L2 LINE L2 -1762 1552 1435 395 308 167 14 chr1 58379773 58380121 -184284232 - L2 LINE L2 -1809 1505 1105 190 216 0 0 chr1 58380237 58380274 -184284079 + MIR SINE MIR 108 144 -118 270 213 271 58 chr1 58381211 58381366 -184282987 - MIR SINE MIR -28 234 47 451 250 0 0 chr1 58381789 58381893 -184282460 - MIR SINE MIR -8 254 151 773 209 122 32 chr1 58381894 58382172 -184282181 - MLT1F LTR MaLR 0 542 240 2336 98 3 35 chr1 58382429 58382747 -184281606 + AluSq SINE Alu 1 308 -5 248 228 0 0 chr1 58382759 58382816 -184281537 - MIR SINE MIR -203 59 3 342 0 0 0 chr1 58383520 58383558 -184280795 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2084 101 0 18 chr1 58383560 58383836 -184280517 - AluSc SINE Alu -38 271 1 189 0 0 0 chr1 58383839 58383860 -184280493 + (T)n Simple_repeat Simple_repeat 1 21 0 2265 234 57 40 chr1 58384199 58384775 -184279578 + MLT1E LTR MaLR 5 590 -3 1825 161 27 3 chr1 58385669 58385961 -184278392 - AluJb SINE Alu -13 299 1 250 241 56 19 chr1 58385962 58386070 -184278283 - HAL1 LINE L1 -160 2347 2236 1356 206 138 15 chr1 58386218 58386616 -184277737 - HAL1 LINE L1 -698 1809 1363 422 228 85 110 chr1 58386777 58386875 -184277478 - HAL1 LINE L1 -1450 1057 958 1843 134 10 34 chr1 58386875 58387192 -184277161 - AluSx SINE Alu 0 310 1 422 228 85 110 chr1 58387192 58387207 -184277146 - HAL1 LINE L1 -1549 958 944 1887 149 24 0 chr1 58387207 58387495 -184276858 - AluSx SINE Alu -17 295 1 422 228 85 110 chr1 58387495 58387651 -184276702 - HAL1 LINE L1 -1563 944 793 1836 122 22 22 chr1 58387670 58387948 -184276405 - AluSx SINE Alu -34 278 1 26 0 0 0 chr1 58387948 58387974 -184276379 + AT_rich Low_complexity Low_complexity 1 26 0 2419 68 7 0 chr1 58387983 58388276 -184276077 + AluY SINE Alu 1 295 -16 1187 119 0 6 chr1 58388276 58388436 -184275917 + AluSq SINE Alu 137 295 -18 417 308 13 63 chr1 58388437 58388596 -184275757 - HAL1 LINE L1 -1876 631 481 295 299 52 19 chr1 58388616 58388658 -184275695 - HAL1 LINE L1 -2117 390 351 2214 97 6 31 chr1 58388658 58388977 -184275376 - AluSx SINE Alu -1 311 1 295 299 52 19 chr1 58388977 58389088 -184275265 - HAL1 LINE L1 -2156 351 232 214 91 0 68 chr1 58389089 58389133 -184275220 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 1198 61 0 20 chr1 58389135 58389282 -184275071 - AluY SINE Alu -167 144 1 2659 58 0 0 chr1 58389699 58390008 -184274345 - AluY SINE Alu -2 309 1 1581 135 12 95 chr1 58390301 58390626 -184273727 - AluJb SINE Alu -14 298 1 27 62 0 0 chr1 58390629 58390677 -184273676 + AT_rich Low_complexity Low_complexity 1 48 0 368 295 5 68 chr1 58391029 58391236 -184273117 - L1ME4a LINE L1 -64 6057 5864 969 171 77 57 chr1 58391376 58391622 -184272731 + AluJo SINE Alu 1 251 -61 2317 110 0 0 chr1 58392137 58392437 -184271916 - AluSq SINE Alu -13 300 1 691 216 12 24 chr1 58392461 58392628 -184271725 + FRAM SINE Alu 6 170 -6 393 168 88 18 chr1 58392780 58392893 -184271460 - MIR SINE MIR -6 256 136 28 0 0 0 chr1 58392893 58392921 -184271432 + AT_rich Low_complexity Low_complexity 1 28 0 784 220 60 0 chr1 58392927 58393077 -184271276 - AluJb SINE Alu -16 296 138 33 43 0 0 chr1 58393183 58393230 -184271123 + AT_rich Low_complexity Low_complexity 1 47 0 751 170 0 0 chr1 58393249 58393361 -184270992 - FLAM_C SINE Alu -30 113 2 2504 57 0 7 chr1 58393493 58393791 -184270562 - AluY SINE Alu -15 296 1 204 40 0 0 chr1 58393834 58393859 -184270494 + (T)n Simple_repeat Simple_repeat 1 25 0 2030 92 78 3 chr1 58394029 58394313 -184270040 - AluSg SINE Alu -5 305 1 318 254 49 25 chr1 58395142 58395283 -184269070 - MIR SINE MIR -62 146 41 1801 148 0 26 chr1 58395732 58396037 -184268316 + AluJb SINE Alu 1 297 -15 459 226 78 10 chr1 58396178 58396280 -184268073 - MIR SINE MIR -122 140 32 556 274 124 7 chr1 58398033 58398221 -184266132 - MIR SINE MIR -50 212 6 479 206 79 8 chr1 58398329 58398417 -184265936 + MER3 DNA MER1_type 50 152 -57 2265 57 4 0 chr1 58398417 58398721 -184265632 - AluY SINE Alu 0 305 1 479 206 79 8 chr1 58398721 58398757 -184265596 + MER3 DNA MER1_type 152 184 -25 337 248 110 11 chr1 58399056 58399169 -184265184 + MIR SINE MIR 23 135 -73 203 333 76 0 chr1 58399777 58399882 -184264471 - MIR SINE MIR -66 142 30 351 297 80 29 chr1 58400367 58400542 -184263811 + L1MC/D LINE L1 5413 5596 -2212 433 270 10 0 chr1 58400876 58400976 -184263377 + MER81 DNA DNA 13 113 -1 1660 160 11 3 chr1 58401080 58401397 -184262956 + AluJb SINE Alu 1 319 0 939 172 6 0 chr1 58401470 58401627 -184262726 + FRAM SINE Alu 9 166 -10 1783 161 7 0 chr1 58402367 58402659 -184261694 - AluSx SINE Alu -18 294 1 789 150 0 16 chr1 58402659 58402786 -184261567 - AluJo/FLAM SINE Alu -181 131 7 289 254 167 24 chr1 58403024 58403150 -184261203 + MIR SINE MIR 71 214 -48 778 85 186 0 chr1 58403464 58403593 -184260760 - L1PB1 LINE L1 0 6151 5999 752 218 67 6 chr1 58403644 58403809 -184260544 - FRAM SINE Alu -4 172 1 938 188 0 19 chr1 58403821 58403981 -184260372 + FRAM SINE Alu 1 157 -9 2305 88 7 0 chr1 58404012 58404318 -184260035 - AluSg SINE Alu -2 308 1 464 228 158 27 chr1 58404430 58404614 -184259739 - MER3 DNA MER1_type 0 209 2 2193 75 0 56 chr1 58406964 58407283 -184257070 - AluSg SINE Alu -9 301 1 704 122 0 0 chr1 58407287 58407394 -184256959 - AluSp/q SINE Alu 0 313 207 591 309 140 23 chr1 58407523 58407815 -184256538 - L2 LINE L2 -31 3241 2912 191 250 36 27 chr1 58408224 58408336 -184256017 - L2 LINE L2 -1220 2094 1982 2094 144 72 29 chr1 58408347 58408430 -184255923 + L1MB4 LINE L1 5134 5212 -968 1883 133 33 3 chr1 58408430 58408730 -184255623 + AluSx SINE Alu 1 309 -3 2094 144 72 29 chr1 58408730 58408854 -184255499 + L1MB4 LINE L1 5212 5329 -851 1995 107 32 19 chr1 58408854 58409162 -184255191 + AluSx SINE Alu 1 312 0 2094 144 72 29 chr1 58409162 58409491 -184254862 + L1MB4 LINE L1 5329 5684 -496 789 151 14 36 chr1 58409492 58409629 -184254724 + MER2 DNA MER2_type 6 139 -206 1561 89 31 27 chr1 58409629 58409853 -184254500 + MER30 DNA MER1_type 1 225 -5 621 215 156 5 chr1 58409863 58410049 -184254304 + MER2 DNA MER2_type 130 343 -2 2384 151 32 46 chr1 58410049 58410551 -184253802 + L1MB4 LINE L1 5680 6174 -6 2111 98 0 3 chr1 58410587 58410873 -184253480 - AluSx SINE Alu -27 285 1 364 246 25 34 chr1 58411112 58411230 -184253123 - MIR3 SINE MIR -1 207 91 1698 106 4 4 chr1 58411242 58411478 -184252875 - AluSq SINE Alu -74 239 4 345 298 3 18 chr1 58411523 58411676 -184252677 + MIR SINE MIR 6 152 -65 250 293 43 17 chr1 58412060 58412176 -184252177 + MIR SINE MIR 30 148 -60 206 227 0 0 chr1 58412298 58412342 -184252011 + (CA)n Simple_repeat Simple_repeat 2 45 0 1786 169 0 3 chr1 58412406 58412708 -184251645 - AluJb SINE Alu -7 305 5 334 239 11 19 chr1 58412740 58412863 -184251490 - L1ME2 LINE L1 -52 6110 5988 1895 79 101 0 chr1 58412923 58413190 -184251163 - AluSp SINE Alu -19 294 1 339 279 147 7 chr1 58413353 58413489 -184250864 - L1MC5 LINE L1 -516 7445 7291 390 304 82 33 chr1 58413530 58413773 -184250580 + L2 LINE L2 1767 2021 -1293 1220 214 22 26 chr1 58413792 58414063 -184250290 - L1MC1 LINE L1 0 6333 6064 592 282 57 83 chr1 58414189 58414490 -184249863 - L2 LINE L2 -1 3271 2979 306 310 0 0 chr1 58414490 58414577 -184249776 + (CATG)n Simple_repeat Simple_repeat 2 88 0 338 225 0 0 chr1 58414798 58414869 -184249484 + L2 LINE L2 2250 2320 -994 1784 208 56 103 chr1 58415882 58416453 -184247900 + MLT1E LTR MaLR 29 593 0 501 283 96 4 chr1 58416580 58416768 -184247585 + MIR SINE MIR 24 225 -37 2141 96 13 0 chr1 58417146 58417447 -184246906 + AluSx SINE Alu 1 305 -7 257 308 11 22 chr1 58417450 58417541 -184246812 - MIR3 SINE MIR -27 181 92 4248 114 71 78 chr1 58417849 58418171 -184246182 + Tigger3b DNA MER2_type 1 324 -2704 1467 124 0 162 chr1 58418171 58418517 -184245836 - AluJb SINE Alu -10 302 13 4248 114 71 78 chr1 58418517 58419047 -184245306 + Tigger3b DNA MER2_type 324 847 -384 1997 135 0 75 chr1 58419047 58419395 -184244958 + MER1B DNA MER1_type 1 322 -17 2412 125 36 13 chr1 58419406 58419790 -184244563 + Tigger3b DNA MER2_type 838 1230 -1 409 214 22 0 chr1 58420260 58420349 -184244004 + MIR SINE MIR 87 177 -85 244 139 0 0 chr1 58421222 58421258 -184243095 - U2 snRNA snRNA -149 39 4 364 238 76 9 chr1 58422073 58422178 -184242175 + MIR SINE MIR 81 192 -70 1260 78 6 17 chr1 58422301 58422481 -184241872 - AluSg/x SINE Alu -12 298 121 249 98 0 49 chr1 58422581 58422622 -184241731 - AluSg/x SINE Alu -160 141 103 1318 101 15 10 chr1 58422622 58422821 -184241532 + AluSq SINE Alu 95 294 -19 663 241 92 15 chr1 58422847 58423042 -184241311 + L1MC4a LINE L1 5517 5726 -2082 1354 163 199 11 chr1 58423042 58423319 -184241034 - MSTB LTR MaLR -97 329 1 658 242 11 22 chr1 58423319 58423364 -184240989 + L1MC4a LINE L1 5735 5779 -2029 691 194 8 22 chr1 58423364 58423498 -184240855 + FLAM_C SINE Alu 1 132 -1 658 242 11 22 chr1 58423498 58423634 -184240719 + L1MC4a LINE L1 5779 5914 -1894 775 186 0 21 chr1 58423641 58423786 -184240567 + FLAM_C SINE Alu 2 143 0 1581 186 11 0 chr1 58423931 58424216 -184240137 - AluJb SINE Alu -24 288 1 230 194 11 75 chr1 58424265 58424358 -184239995 + A-rich Low_complexity Low_complexity 3 89 0 2191 120 0 0 chr1 58424368 58424677 -184239676 + AluSx SINE Alu 1 309 -3 1714 150 11 3 chr1 58424754 58425040 -184239313 - AluJo SINE Alu -23 289 2 822 148 22 0 chr1 58425061 58425196 -184239157 - FLAM_C SINE Alu 0 143 6 948 229 0 0 chr1 58425205 58425380 -184238973 - FAM SINE Alu 0 175 1 236 152 0 0 chr1 58425380 58425426 -184238927 - L1MEd LINE L1 -6016 103 58 180 77 0 0 chr1 58426120 58426146 -184238207 + (T)n Simple_repeat Simple_repeat 1 26 0 792 228 29 6 chr1 58426147 58426318 -184238035 - FAM SINE Alu 0 175 1 252 111 0 0 chr1 58426390 58426426 -184237927 - U2 snRNA snRNA -152 36 1 838 144 116 153 chr1 58426466 58426786 -184237567 - MER4C LTR ERV1 0 465 158 2225 65 0 3 chr1 58426791 58427081 -184237272 + AluSx SINE Alu 1 289 -23 526 66 145 0 chr1 58427085 58427161 -184237192 + MER101 LTR ERV1 388 474 0 235 304 98 0 chr1 58428584 58428696 -184235657 + L2 LINE L2 3185 3307 -6 1919 114 31 3 chr1 58428821 58429110 -184235243 + AluSx SINE Alu 1 297 -15 869 141 99 58 chr1 58429520 58429711 -184234642 - AluJo SINE Alu -14 298 100 1108 117 6 0 chr1 58429770 58429933 -184234420 - AluSg/x SINE Alu -14 296 133 2318 84 0 3 chr1 58429934 58430245 -184234108 - AluY SINE Alu -1 310 1 251 139 0 0 chr1 58430261 58430297 -184234056 - HsTC2 DNA Tc2 -1772 126 91 299 188 124 142 chr1 58430519 58430665 -184233688 + MER112 DNA MER1_type 40 182 -78 1523 184 3 10 chr1 58430665 58430958 -184233395 + AluJb SINE Alu 1 291 -21 299 188 124 142 chr1 58430958 58431029 -184233324 + MER112 DNA MER1_type 182 253 -7 192 342 79 0 chr1 58431236 58431350 -184233003 - L2 LINE L2 -50 3263 3141 721 261 178 63 chr1 58431351 58431856 -184232497 + HAL1 LINE L1 5 567 -1940 939 227 113 40 chr1 58431973 58432894 -184231459 + HAL1 LINE L1 743 1808 -699 920 283 100 23 chr1 58433186 58433625 -184230728 + L1MC4a LINE L1 6476 6948 -860 817 156 55 0 chr1 58433628 58433756 -184230597 + AluJb SINE Alu 2 136 -176 771 193 73 58 chr1 58433776 58434050 -184230303 + L1MC5 LINE L1 6927 7204 -757 1769 166 56 74 chr1 58434050 58434919 -184229434 + Charlie1a DNA MER1_type 1 957 -498 2512 58 0 0 chr1 58434923 58435234 -184229119 - AluY SINE Alu 0 311 1 26 0 0 0 chr1 58435243 58435269 -184229084 + AT_rich Low_complexity Low_complexity 1 26 0 1723 122 22 22 chr1 58435269 58435547 -184228806 + AluSx SINE Alu 1 278 -34 409 228 85 110 chr1 58435566 58435722 -184228631 + HAL1 LINE L1 793 951 -1556 1775 149 24 0 chr1 58435722 58436010 -184228343 + AluSx SINE Alu 1 295 -17 409 228 85 110 chr1 58436010 58436025 -184228328 + HAL1 LINE L1 951 965 -1542 1727 137 10 34 chr1 58436025 58436342 -184228011 + AluSx SINE Alu 1 310 0 409 228 85 110 chr1 58436342 58436440 -184227913 + HAL1 LINE L1 965 1057 -1450 1126 246 77 38 chr1 58436492 58436999 -184227354 + HAL1 LINE L1 1283 1809 -698 242 241 56 19 chr1 58437147 58437255 -184227098 + HAL1 LINE L1 2236 2347 -160 1421 183 20 10 chr1 58437256 58437551 -184226802 + AluJb SINE Alu 1 298 -14 218 222 0 37 chr1 58438157 58438211 -184226142 - L2 LINE L2 -6 3266 3215 2280 234 57 40 chr1 58438449 58439025 -184225328 - MLT1E LTR MaLR -3 590 5 189 0 0 0 chr1 58439364 58439385 -184224968 + (A)n Simple_repeat Simple_repeat 1 21 0 1961 101 0 18 chr1 58439388 58439664 -184224689 + AluSc SINE Alu 1 271 -38 342 0 0 0 chr1 58439666 58439704 -184224649 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 269 228 0 0 chr1 58440408 58440465 -184223888 + MIR SINE MIR 3 59 -203 2213 99 3 34 chr1 58440472 58440795 -184223558 - AluSq SINE Alu 0 313 1 783 209 122 32 chr1 58441052 58441330 -184223023 + MLT1F LTR MaLR 240 542 0 492 234 0 9 chr1 58441331 58441438 -184222915 + MIR SINE MIR 151 256 -6 326 197 258 62 chr1 58441858 58442036 -184222317 + MIR SINE MIR 47 259 -3 1485 107 5 0 chr1 58442381 58442586 -184221767 - AluSx SINE Alu -106 206 1 388 355 112 23 chr1 58442700 58442914 -184221439 + L2 LINE L2 2969 3201 -71 2326 78 0 0 chr1 58442996 58443291 -184221062 + AluSg SINE Alu 1 295 -15 23 0 0 0 chr1 58444179 58444202 -184220151 + AT_rich Low_complexity Low_complexity 1 23 0 2358 98 0 10 chr1 58444236 58444543 -184219810 - AluSq SINE Alu -9 304 1 2496 70 0 0 chr1 58444765 58445063 -184219290 - AluY SINE Alu -13 298 1 451 119 0 0 chr1 58446282 58446349 -184218004 + AluS SINE Alu 2 68 -244 1137 87 0 0 chr1 58446350 58446488 -184217865 - AluSq/x SINE Alu -174 138 1 368 272 137 57 chr1 58446557 58446742 -184217611 - L1ME4a LINE L1 -8 6113 5944 798 161 101 0 chr1 58446742 58446891 -184217462 - FAM SINE Alu -11 164 1 368 272 137 57 chr1 58446891 58446961 -184217392 - L1ME4a LINE L1 -177 5944 5881 2087 123 3 10 chr1 58446961 58447254 -184217099 + AluY SINE Alu 1 291 -20 368 272 137 57 chr1 58447254 58447456 -184216897 - L1ME4a LINE L1 -240 5881 5697 2172 140 0 10 chr1 58447456 58447770 -184216583 - AluJb SINE Alu -1 311 1 1635 147 56 4 chr1 58447772 58448024 -184216329 - AluJb SINE Alu -14 298 34 368 272 137 57 chr1 58448024 58448145 -184216208 - L1ME4a LINE L1 -424 5697 5483 32 91 0 0 chr1 58448228 58448316 -184216037 + AT_rich Low_complexity Low_complexity 1 88 0 2146 115 16 29 chr1 58448316 58448628 -184215725 + AluSx SINE Alu 1 308 -4 759 224 37 6 chr1 58448642 58448803 -184215550 + FRAM SINE Alu 1 166 0 262 235 262 11 chr1 58448844 58449027 -184215326 - HAL1 LINE L1 -110 2397 2169 307 312 14 14 chr1 58449847 58449905 -184214448 - L1MC4a LINE L1 -1946 5862 5805 2118 82 71 0 chr1 58449905 58450186 -184214167 + AluY SINE Alu 1 301 -10 307 312 14 14 chr1 58450186 58450268 -184214085 - L1MC4a LINE L1 -2002 5806 5722 534 181 50 26 chr1 58450288 58450482 -184213871 - L1MA9 LINE L1 -22 6290 5989 4746 39 5 0 chr1 58450913 58451501 -184212852 - LTR10C LTR ERV1 0 591 1 2159 100 4 4 chr1 58451651 58451962 -184212391 - AluSg SINE Alu 0 311 1 1886 170 0 26 chr1 58452541 58452852 -184211501 + AluJb SINE Alu 1 303 -9 1159 169 188 8 chr1 58452862 58453117 -184211236 + AluJb SINE Alu 2 302 0 623 138 9 0 chr1 58453156 58453265 -184211088 - L1MB7 LINE L1 -21 6163 6054 2027 117 0 7 chr1 58453265 58453538 -184210815 - AluSx SINE Alu -18 294 24 1570 160 31 19 chr1 58453577 58453895 -184210458 - L1MB7 LINE L1 -88 6096 5775 545 196 0 0 chr1 58453950 58454042 -184210311 - FLAM_C SINE Alu -24 119 28 240 192 58 0 chr1 58454042 58454094 -184210259 - L1MB7 LINE L1 -396 5788 5734 301 143 143 0 chr1 58454095 58454165 -184210188 - L1MB7 LINE L1 -406 5778 5699 892 176 0 0 chr1 58454166 58454308 -184210045 + FRAM SINE Alu 4 145 -31 385 301 94 35 chr1 58454429 58454632 -184209721 - L1M4 LINE L1 -1299 4847 4633 1587 214 3 19 chr1 58454879 58455188 -184209165 - AluJo SINE Alu -8 304 1 1691 150 51 27 chr1 58455259 58455552 -184208801 + AluJb SINE Alu 11 310 -2 1550 201 13 20 chr1 58455572 58455900 -184208453 + AluJb SINE Alu 2 327 0 21 0 0 0 chr1 58455920 58455941 -184208412 + AT_rich Low_complexity Low_complexity 1 21 0 935 215 9 76 chr1 58455961 58456184 -184208169 - AluJo SINE Alu -97 215 8 221 362 9 0 chr1 58456421 58456526 -184207827 - MIR3 SINE MIR -4 204 99 340 310 42 7 chr1 58456650 58456792 -184207561 + L1ME LINE L1 52 198 -5921 256 331 91 52 chr1 58457089 58457572 -184206781 + L1ME LINE L1 449 950 -5169 2164 100 7 4 chr1 58457577 58457856 -184206497 + AluSx SINE Alu 16 295 -17 22 56 0 0 chr1 58458343 58458379 -184205974 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr1 58458399 58458428 -184205925 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr1 58458443 58458468 -184205885 + (T)n Simple_repeat Simple_repeat 1 25 0 1765 40 0 5 chr1 58458579 58458780 -184205573 - AluY SINE Alu -111 200 1 216 0 0 0 chr1 58459046 58459070 -184205283 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 307 294 0 0 chr1 58459179 58459247 -184205106 + AluJ/FRAM SINE Alu 221 288 -14 922 214 77 55 chr1 58459247 58459805 -184204548 - L1M4 LINE L1 -1001 5145 4700 2129 114 17 17 chr1 58459805 58460103 -184204250 - AluSq SINE Alu -15 298 1 922 214 77 55 chr1 58460103 58460130 -184204223 - L1M4 LINE L1 -1446 4700 4675 396 238 15 83 chr1 58460105 58460297 -184204056 - L1M4 LINE L1 -2214 3932 3761 * 852 115 0 0 chr1 58460297 58460427 -184203926 - FLAM_C SINE Alu -3 130 1 396 238 15 83 chr1 58460427 58460499 -184203854 - L1M4 LINE L1 -2385 3761 3686 583 179 0 0 chr1 58460500 58460595 -184203758 - AluJ/FLAM SINE Alu -215 97 3 469 233 31 152 chr1 58460595 58460747 -184203606 - L1M4 LINE L1 -2475 3671 3502 2442 79 13 25 chr1 58460747 58461064 -184203289 - AluSp SINE Alu 0 313 1 469 233 31 152 chr1 58461064 58461444 -184202909 - L1M4 LINE L1 -2644 3502 3234 2380 82 3 25 chr1 58461444 58461761 -184202592 - AluSg SINE Alu 0 310 1 469 233 31 152 chr1 58461761 58461897 -184202456 - L1M4 LINE L1 -2912 3234 3083 901 144 58 0 chr1 58461904 58462043 -184202310 - AluJo SINE Alu -165 147 1 411 73 0 0 chr1 58462047 58462102 -184202251 + (TG)n Simple_repeat Simple_repeat 2 56 0 447 256 0 0 chr1 58462106 58462196 -184202157 + L1MC4 LINE L1 6614 6703 -1339 354 233 14 0 chr1 58462196 58462269 -184202084 + L1MCa LINE L1 1995 2068 -4358 320 318 11 11 chr1 58462200 58462288 -184202065 - L1MC4 LINE L1 -1339 6703 6616 * 234 0 0 0 chr1 58462290 58462316 -184202037 + (TG)n Simple_repeat Simple_repeat 2 27 0 2117 141 3 10 chr1 58462319 58462624 -184201729 - AluSx SINE Alu -9 303 1 1336 47 0 0 chr1 58462650 58462820 -184201533 - L1PA5 LINE L1 0 6154 5985 247 246 0 0 chr1 58462821 58462878 -184201475 + L2 LINE L2 3257 3313 0 1786 174 7 7 chr1 58463480 58463774 -184200579 - AluJb SINE Alu -18 294 1 1105 288 80 49 chr1 58463834 58464601 -184199752 + L2 LINE L2 2482 3272 -41 468 295 54 54 chr1 58464683 58464924 -184199429 + L2 LINE L2 3036 3276 -37 310 343 70 17 chr1 58465026 58465198 -184199155 - MIR SINE MIR -58 204 24 269 284 198 0 chr1 58465277 58465393 -184198960 - MIR SINE MIR -84 178 40 25 0 0 0 chr1 58465437 58465462 -184198891 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 58465663 58465698 -184198655 + AT_rich Low_complexity Low_complexity 1 35 0 2273 80 47 7 chr1 58465774 58466073 -184198280 - AluY SINE Alu 0 311 1 259 153 17 17 chr1 58466142 58466201 -184198152 - L1MC4 LINE L1 -1 8041 7983 457 97 0 0 chr1 58466301 58466373 -184197980 + AluSp/q SINE Alu 236 307 -6 2206 115 6 25 chr1 58466382 58466696 -184197657 + AluSx SINE Alu 1 308 -4 1957 154 0 0 chr1 58466749 58467035 -184197318 + AluJo SINE Alu 12 297 -15 1866 170 67 7 chr1 58467043 58467448 -184196905 + Charlie1 DNA MER1_type 2333 2761 0 825 192 83 73 chr1 58467460 58467762 -184196591 + L1MC5 LINE L1 7221 7525 -436 394 287 18 42 chr1 58467852 58468019 -184196334 + L1ME3A LINE L1 5956 6118 -52 * 561 276 57 50 chr1 58468016 58468476 -184195877 + HAL1 LINE L1 2045 2507 0 445 174 10 51 chr1 58468479 58468577 -184195776 - L1ME3A LINE L1 -117 6053 5960 309 157 169 24 chr1 58468728 58468811 -184195542 - MER112 DNA MER1_type -13 247 153 962 230 115 64 chr1 58468824 58469273 -184195080 - MER41B LTR ERV1 -13 570 87 404 213 41 25 chr1 58469326 58469448 -184194905 - MER112 DNA MER1_type -135 125 2 202 388 45 0 chr1 58469568 58469702 -184194651 + L2 LINE L2 2596 2735 -579 4334 122 82 50 chr1 58469702 58470357 -184193996 - L1MC1 LINE L1 0 6333 5700 1952 152 7 7 chr1 58470357 58470653 -184193700 + AluJb SINE Alu 12 307 -5 4334 122 82 50 chr1 58470653 58470750 -184193603 - L1MC1 LINE L1 -633 5700 5608 1997 152 30 0 chr1 58470750 58471052 -184193301 - AluSx SINE Alu -1 311 1 4334 122 82 50 chr1 58471052 58471177 -184193176 - L1MC1 LINE L1 -725 5608 5427 2021 136 3 29 chr1 58471207 58471515 -184192838 + AluJb SINE Alu 3 302 -10 860 250 75 0 chr1 58471575 58471787 -184192566 + MIR SINE MIR 34 261 -1 216 0 0 0 chr1 58471825 58471849 -184192504 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 262 139 0 0 chr1 58471852 58471888 -184192465 - Alu SINE Alu -20 281 246 409 252 49 0 chr1 58472292 58472415 -184191938 - MLT1F1 LTR MaLR -130 437 309 1415 238 99 5 chr1 58473561 58473985 -184190368 - L1MC3 LINE L1 0 7785 7322 642 173 49 111 chr1 58474220 58474395 -184189958 - L1MC3 LINE L1 -610 7175 7016 2081 120 17 0 chr1 58474395 58474687 -184189666 - AluSq SINE Alu 0 313 17 642 173 49 111 chr1 58474687 58474737 -184189616 - L1MC3 LINE L1 -769 7016 6964 2005 161 0 0 chr1 58474740 58475039 -184189314 - AluSx SINE Alu -13 299 1 643 131 0 0 chr1 58475053 58475152 -184189201 - AluJb SINE Alu -10 302 204 362 152 152 33 chr1 58475154 58475246 -184189107 + AluJb SINE Alu 191 293 -9 812 85 8 0 chr1 58475246 58475364 -184188989 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 981 291 276 15 chr1 58475528 58476282 -184188071 - L1MC4 LINE L1 -432 7610 6660 383 274 0 24 chr1 58476296 58476547 -184187806 + (CA)n Simple_repeat Simple_repeat 1 244 0 555 242 0 0 chr1 58476584 58476762 -184187591 + (CA)n Simple_repeat Simple_repeat 2 179 0 241 313 100 0 chr1 58476786 58476936 -184187417 - L1MC4a LINE L1 -1202 6606 6442 183 98 0 59 chr1 58477844 58477895 -184186458 + (CCCCG)n Simple_repeat Simple_repeat 1 48 0 433 305 39 17 chr1 58478066 58478299 -184186054 + L1MC2 LINE L1 4276 4513 -1633 309 286 64 2 chr1 58478356 58478499 -184185854 + L1ME2 LINE L1 6007 6164 0 891 131 0 0 chr1 58478659 58478781 -184185572 + FRAM SINE Alu 33 154 -22 685 186 13 6 chr1 58478786 58478942 -184185411 + L1MC2 LINE L1 5156 5312 -834 2279 123 0 0 chr1 58478986 58479294 -184185059 + AluSc SINE Alu 1 308 -1 246 48 0 0 chr1 58479324 58479366 -184184987 + L1M1 LINE L1 2255 2296 -5269 4995 158 42 20 chr1 58479370 58479876 -184184477 + L1MC2 LINE L1 5319 5812 -532 2079 95 3 14 chr1 58479876 58480204 -184184149 + AluY SINE Alu 1 325 0 4995 158 42 20 chr1 58480204 58480691 -184183662 + L1MC2 LINE L1 5812 6335 -9 355 296 87 52 chr1 58480701 58480988 -184183365 - L1MEc LINE L1 -4391 2005 1709 2518 56 3 7 chr1 58480988 58481292 -184183061 - AluY SINE Alu -8 303 1 1152 68 0 0 chr1 58481292 58481424 -184182929 - AluSq/x SINE Alu -178 135 4 525 288 123 42 chr1 58481428 58481472 -184182881 - L1MEc LINE L1 -5523 873 834 2301 92 3 0 chr1 58481472 58481766 -184182587 - AluSc SINE Alu -14 295 1 525 288 123 42 chr1 58481766 58482404 -184181949 - L1MEc LINE L1 -5562 834 136 242 178 26 79 chr1 58483191 58483343 -184181010 + (CTGGGG)n Simple_repeat Simple_repeat 5 148 0 277 94 22 106 chr1 58483425 58483605 -184180748 + (CTGGGG)n Simple_repeat Simple_repeat 1 165 0 1974 138 7 0 chr1 58486627 58486918 -184177435 - AluJb SINE Alu -19 293 1 435 228 49 0 chr1 58487655 58487778 -184176575 - MLT1F1 LTR MaLR -130 437 309 216 147 0 80 chr1 58489586 58489661 -184174692 + (TGGGGG)n Simple_repeat Simple_repeat 6 74 0 420 268 18 54 chr1 58490496 58490664 -184173689 - L1MB5 LINE L1 -8 6166 6005 364 250 21 0 chr1 58490751 58490847 -184173506 - L1MC4 LINE L1 -1219 6823 6726 205 271 17 90 chr1 58495653 58495830 -184168523 + C-rich Low_complexity Low_complexity 4 167 0 * 255 270 8 40 chr1 58495787 58495913 -184168440 + CT-rich Low_complexity Low_complexity 1 122 0 187 306 0 20 chr1 58499788 58499837 -184164516 + L2 LINE L2 3225 3272 0 237 326 0 0 chr1 58507596 58507694 -184156659 + G-rich Low_complexity Low_complexity 2 99 0 196 250 0 0 chr1 58508123 58508163 -184156190 + L2 LINE L2 3269 3308 -5 599 239 183 32 chr1 58510771 58511143 -184153210 + MLT1C LTR MaLR 6 433 -34 264 59 0 0 chr1 58512659 58512693 -184151660 + (TGG)n Simple_repeat Simple_repeat 1 34 0 185 170 0 75 chr1 58515635 58515688 -184148665 + L3 LINE CR1 1102 1150 -427 239 340 54 35 chr1 58516968 58517171 -184147182 - MIR SINE MIR -17 245 39 295 268 30 24 chr1 58518920 58519084 -184145269 + (CCCCAG)n Simple_repeat Simple_repeat 2 166 0 * 413 166 16 123 chr1 58518980 58519232 -184145121 + (CCCCG)n Simple_repeat Simple_repeat 1 225 0 1621 160 25 44 chr1 58524588 58524906 -184139447 + AluJb SINE Alu 1 312 0 201 208 234 26 chr1 58526212 58526289 -184138064 + MIR SINE MIR 104 196 -12 246 217 0 95 chr1 58528232 58528421 -184135932 + C-rich Low_complexity Low_complexity 3 173 0 258 323 32 6 chr1 58528452 58528610 -184135743 + (CCCG)n Simple_repeat Simple_repeat 2 163 0 218 322 22 33 chr1 58528754 58529012 -184135341 + (CCCG)n Simple_repeat Simple_repeat 1 255 0 607 294 118 6 chr1 58529372 58529787 -184134566 + L1MB5 LINE L1 5661 6132 -42 220 312 13 32 chr1 58532730 58532887 -184131466 + (TG)n Simple_repeat Simple_repeat 1 154 0 2318 82 0 7 chr1 58534682 58534988 -184129365 + AluSg SINE Alu 1 304 -6 1923 86 0 0 chr1 58534988 58535231 -184129122 + AluSq SINE Alu 1 243 -70 442 239 8 44 chr1 58536077 58536331 -184128022 - MLT1B LTR MaLR -44 346 24 296 217 0 72 chr1 58536596 58536734 -184127619 + G-rich Low_complexity Low_complexity 1 128 0 900 263 115 12 chr1 58536782 58537120 -184127233 + MLT1A2 LTR MaLR 1 373 -1 273 91 0 61 chr1 58539747 58539813 -184124540 + (TGGGGG)n Simple_repeat Simple_repeat 5 66 0 639 237 51 14 chr1 58541052 58541267 -184123086 + Charlie1 DNA MER1_type 2457 2679 -82 22 0 0 0 chr1 58744762 58744784 -183919569 + AT_rich Low_complexity Low_complexity 1 22 0 1743 198 7 3 chr1 58744788 58745081 -183919272 + AluJb SINE Alu 3 296 -16 677 172 0 0 chr1 58745081 58745203 -183919150 - L1MB3 LINE L1 -356 5827 5706 379 306 38 21 chr1 58745189 58745424 -183918929 - L1ME4a LINE L1 -224 5897 5659 * 287 209 0 81 chr1 58745802 58745888 -183918465 - AluJ/FRAM SINE Alu -7 295 224 191 77 58 19 chr1 58746046 58746098 -183918255 + (TA)n Simple_repeat Simple_repeat 2 55 0 2095 121 24 3 chr1 58746376 58746674 -183917679 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr1 58746753 58746781 -183917572 + AT_rich Low_complexity Low_complexity 1 28 0 2411 81 3 3 chr1 58747256 58747553 -183916800 - AluSg SINE Alu -13 297 1 1458 248 142 20 chr1 58747719 58747940 -183916413 - L2 LINE L2 -19 3294 3101 1642 65 0 5 chr1 58747940 58748141 -183916212 - AluY SINE Alu -16 295 96 1458 248 142 20 chr1 58748141 58748577 -183915776 - L2 LINE L2 -212 3101 2572 260 331 173 0 chr1 58748793 58748926 -183915427 - MIR SINE MIR -10 252 97 321 325 48 63 chr1 58748944 58749338 -183915015 - L2 LINE L2 -72 3200 2813 320 194 0 0 chr1 58750080 58750147 -183914206 + AluJ/FLAM SINE Alu 33 99 -203 611 226 44 69 chr1 58750679 58750883 -183913470 + MIR SINE MIR 29 227 -35 1443 271 216 14 chr1 58750889 58751464 -183912889 + L2 LINE L2 1778 2468 -846 414 243 226 11 chr1 58752790 58752971 -183911382 + MIR SINE MIR 37 256 -6 425 271 89 12 chr1 58753152 58753350 -183911003 + MIR SINE MIR 4 261 -1 2211 110 3 0 chr1 58753716 58754008 -183910345 - AluSx SINE Alu -19 293 1 594 235 64 16 chr1 58754094 58754281 -183910072 - L2 LINE L2 0 3313 3118 23 0 0 0 chr1 58754530 58754553 -183909800 + AT_rich Low_complexity Low_complexity 1 23 0 322 208 0 0 chr1 58754654 58754707 -183909646 + MER58A DNA MER1_type 2 54 -170 1251 276 149 26 chr1 58754727 58755339 -183909014 - L1ME3 LINE L1 -2 6160 5474 2970 218 76 35 chr1 58755347 58756202 -183908151 - L1ME1 LINE L1 -5 6161 5272 302 176 0 29 chr1 58756238 58756306 -183908047 - L1ME1 LINE L1 -864 5282 5217 867 175 62 6 chr1 58756313 58756490 -183907863 + MER58A DNA MER1_type 38 224 0 2461 205 75 25 chr1 58756502 58757059 -183907294 - MLT1E LTR MaLR -1 592 8 265 279 78 60 chr1 58757065 58757334 -183907019 - L1ME4a LINE L1 -114 6007 5734 278 338 78 46 chr1 58757710 58757994 -183906359 - L2 LINE L2 -7 3265 2973 368 322 109 66 chr1 58758032 58758352 -183906001 + L2 LINE L2 2935 3268 -4 27 0 0 0 chr1 58760937 58760964 -183903389 + AT_rich Low_complexity Low_complexity 1 27 0 361 239 290 7 chr1 58761386 58761541 -183902812 + MIR3 SINE MIR 3 201 -7 318 305 138 0 chr1 58762166 58762333 -183902020 + MIR SINE MIR 67 256 -6 703 328 166 13 chr1 58762426 58762924 -183901429 - L2 LINE L2 -1 3312 2745 1028 221 144 13 chr1 58762937 58763235 -183901118 - MLT1I LTR MaLR -70 339 3 883 277 176 69 chr1 58763262 58764070 -183900283 - L2 LINE L2 -611 2703 1810 1827 108 89 4 chr1 58764723 58765002 -183899351 + AluSx SINE Alu 1 301 0 205 333 129 14 chr1 58765293 58765440 -183898913 + L2 LINE L2 3107 3270 -2 2235 118 0 3 chr1 58765628 58765932 -183898421 + AluSx SINE Alu 1 303 -9 277 280 123 66 chr1 58765945 58766188 -183898165 + MIR SINE MIR 1 257 -5 2111 98 0 20 chr1 58766237 58766534 -183897819 - AluSc SINE Alu -18 291 1 423 283 96 12 chr1 58768228 58768394 -183895959 + MIR SINE MIR 34 213 -49 2674 200 65 30 chr1 58768415 58769020 -183895333 - MLT1E2 LTR MaLR 0 626 1 207 200 25 0 chr1 58769063 58769103 -183895250 - L2 LINE L2 -94 3178 3138 360 263 76 17 chr1 58769679 58769797 -183894556 - MIR SINE MIR 0 262 138 271 299 124 0 chr1 58770206 58770303 -183894050 + MIR SINE MIR 154 262 0 192 245 20 20 chr1 58770547 58770596 -183893757 + MIR SINE MIR 34 82 -180 244 325 76 19 chr1 58770615 58770772 -183893581 + MIR SINE MIR 10 175 -87 198 0 0 0 chr1 58770850 58770872 -183893481 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 204 265 0 0 chr1 58771771 58771820 -183892533 + G-rich Low_complexity Low_complexity 50 98 0 286 194 0 30 chr1 58772408 58772475 -183891878 - MIR3 SINE MIR -54 154 90 232 242 31 112 chr1 58773542 58773703 -183890650 + L2 LINE L2 2876 3023 -249 209 235 39 147 chr1 58773730 58773832 -183890521 + MIR3 SINE MIR 102 192 -16 284 290 225 7 chr1 58774404 58774542 -183889811 - MIR SINE MIR -67 195 28 1851 131 52 24 chr1 58774733 58775023 -183889330 + AluJo SINE Alu 1 298 -14 236 286 110 11 chr1 58775027 58775118 -183889235 - MIR SINE MIR -79 129 30 209 295 0 0 chr1 58775449 58775510 -183888843 + L2 LINE L2 2917 2977 -295 901 163 51 126 chr1 58775572 58775647 -183888706 - MER33 DNA MER1_type -2261 324 245 1952 135 17 7 chr1 58775647 58775936 -183888417 - AluJb SINE Alu -10 302 11 901 163 51 126 chr1 58775936 58776210 -183888143 - MER33 DNA MER1_type -2340 245 1 263 269 140 0 chr1 58776317 58776410 -183887943 + MIR SINE MIR 49 154 -108 263 234 223 0 chr1 58777037 58777131 -183887222 + L2 LINE L2 3174 3288 -25 1850 177 3 0 chr1 58777288 58777587 -183886766 + AluJo SINE Alu 3 302 -10 383 304 170 0 chr1 58777711 58777905 -183886448 - MIR SINE MIR -3 259 33 246 187 0 38 chr1 58778264 58778317 -183886036 - MIR SINE MIR -65 143 102 298 197 0 0 chr1 58778899 58778960 -183885393 - L2 LINE L2 -292 2980 2920 195 139 0 0 chr1 58779523 58779559 -183884794 + (CTG)n Simple_repeat Simple_repeat 3 38 0 307 282 79 73 chr1 58780533 58780863 -183883490 - L2 LINE L2 -2 3270 2939 229 244 33 44 chr1 58780948 58781038 -183883315 + L2 LINE L2 3197 3285 -28 447 39 0 39 chr1 58781719 58781796 -183882557 + (TAAAA)n Simple_repeat Simple_repeat 2 75 0 213 307 45 23 chr1 58782240 58782328 -183882025 + L2 LINE L2 2231 2320 -994 2133 98 0 4 chr1 58782429 58782704 -183881649 + AluSq SINE Alu 1 274 -39 264 301 0 0 chr1 58783316 58783399 -183880954 - L1ME4a LINE L1 -69 6052 5970 * 342 226 94 9 chr1 58783394 58783500 -183880853 - L1MB7 LINE L1 0 6184 6070 232 309 34 51 chr1 58784535 58784713 -183879640 - L2 LINE L2 -173 3099 2925 244 350 82 10 chr1 58784731 58784925 -183879428 + L2 LINE L2 2119 2326 -988 258 86 0 0 chr1 58785190 58785225 -183879128 + U2 snRNA snRNA 1 35 -153 319 194 121 73 chr1 58786176 58786300 -183878053 + L2 LINE L2 3172 3301 -12 210 129 81 0 chr1 58786311 58786373 -183877980 + (TA)n Simple_repeat Simple_repeat 1 67 0 182 329 76 0 chr1 58786392 58786471 -183877882 - L2 LINE L2 -29 3243 3159 1459 172 36 33 chr1 58789373 58789675 -183874678 + AluJo SINE Alu 10 312 0 519 247 16 54 chr1 58790128 58790298 -183874055 + MIR SINE MIR 23 194 -62 306 125 0 0 chr1 58791754 58791802 -183872551 + (GGA)n Simple_repeat Simple_repeat 1 48 0 282 331 15 31 chr1 58792084 58792214 -183872139 - L2 LINE L2 -1019 2295 2168 257 292 13 0 chr1 58792305 58792461 -183871892 + (CA)n Simple_repeat Simple_repeat 1 158 0 274 331 35 14 chr1 58792483 58792628 -183871725 + (CATG)n Simple_repeat Simple_repeat 3 150 0 299 298 164 58 chr1 58792636 58792911 -183871442 - L2 LINE L2 -1315 1999 1696 378 339 83 10 chr1 58795662 58795854 -183868499 + L3 LINE CR1 1328 1533 -44 191 235 20 0 chr1 58796127 58796178 -183868175 + MIR SINE MIR 81 132 -76 195 353 35 0 chr1 58796979 58797064 -183867289 + MIR3 SINE MIR 102 189 -19 258 327 56 0 chr1 58797260 58797389 -183866964 + MIR SINE MIR 23 164 -62 186 328 0 0 chr1 58797884 58797942 -183866411 + L3b LINE CR1 1323 1380 -203 233 263 172 10 chr1 58797953 58798052 -183866301 + MIR3 SINE MIR 15 129 -79 345 274 38 19 chr1 58798271 58798377 -183865976 + L2 LINE L2 3206 3313 0 217 267 0 78 chr1 58798376 58798466 -183865887 - MIR SINE MIR -64 144 62 * 579 186 40 68 chr1 58798798 58798899 -183865454 + MER45A DNA AcHobo 7 103 -1478 1544 176 0 37 chr1 58798899 58799226 -183865127 - AluSx SINE Alu 0 316 1 579 186 40 68 chr1 58799226 58799300 -183865053 + MER45A DNA AcHobo 103 178 0 254 232 73 53 chr1 58800633 58800787 -183863566 - MIR SINE MIR -65 143 20 * 428 269 208 19 chr1 58800727 58800939 -183863414 + MIR SINE MIR 11 262 0 185 196 0 65 chr1 58801343 58801389 -183862964 - MIR SINE MIR -65 143 101 222 350 211 0 chr1 58801650 58801773 -183862580 - MIR SINE MIR -75 187 39 250 312 0 40 chr1 58803547 58803672 -183860681 + L2 LINE L2 2830 2949 -323 190 364 45 0 chr1 58803790 58803856 -183860497 + L2 LINE L2 3118 3186 -86 211 284 20 0 chr1 58809717 58809819 -183854534 + (CA)n Simple_repeat Simple_repeat 2 105 0 195 365 94 6 chr1 58812343 58812524 -183851829 - L2 LINE L2 -684 2630 2434 466 175 79 9 chr1 58812595 58812709 -183851644 - MER69A DNA AcHobo -12 165 44 421 237 114 0 chr1 58813860 58813974 -183850379 + MIR SINE MIR 112 238 -24 327 250 107 50 chr1 58814024 58814209 -183850144 - L2 LINE L2 -49 3223 2942 223 329 14 0 chr1 58814388 58814458 -183849895 + L2 LINE L2 3197 3267 -5 807 282 106 7 chr1 58814499 58814924 -183849429 + L1ME4a LINE L1 5655 6121 0 529 282 114 20 chr1 58814944 58815146 -183849207 + MIR SINE MIR 21 241 -21 384 366 83 18 chr1 58815594 58815933 -183848420 + L2 LINE L2 2890 3250 -22 2115 41 63 0 chr1 58815996 58816266 -183848087 + AluY SINE Alu 10 296 -15 2272 94 3 3 chr1 58816525 58816832 -183847521 + AluSx SINE Alu 1 307 -5 1332 192 19 7 chr1 58816941 58817219 -183847134 + L1MD3 LINE L1 7610 7985 -10 575 265 20 14 chr1 58817347 58817494 -183846859 + L2 LINE L2 3166 3313 0 591 219 17 0 chr1 58817607 58817726 -183846627 + L1MD3 LINE L1 7865 7985 -10 575 254 22 14 chr1 58817867 58818005 -183846348 + L2 LINE L2 3175 3313 0 322 281 225 56 chr1 58818017 58818248 -183846105 + L1ME LINE L1 5310 5579 -542 596 274 118 59 chr1 58818561 58819002 -183845351 + MLT1J LTR MaLR 3 469 -42 390 281 187 22 chr1 58820343 58820482 -183843871 - MIR3 SINE MIR -15 193 32 181 297 33 0 chr1 58820883 58820974 -183843379 + L2 LINE L2 1993 2086 -1228 705 288 262 11 chr1 58821113 58822026 -183842327 - L2 LINE L2 -7 3306 2155 255 338 84 19 chr1 58822241 58822395 -183841958 + MLT1H LTR MaLR 108 271 -278 756 268 226 0 chr1 58822395 58822660 -183841693 + MLT1H LTR MaLR 225 549 0 195 368 32 0 chr1 58823498 58823593 -183840760 + L2 LINE L2 2224 2321 -993 471 269 28 14 chr1 58824467 58824608 -183839745 + MIR SINE MIR 10 152 -110 572 154 31 46 chr1 58825747 58825877 -183838476 + MIR SINE MIR 19 146 -62 317 325 127 34 chr1 58826341 58826633 -183837720 + L2 LINE L2 2954 3272 0 227 357 119 8 chr1 58827212 58827456 -183836897 - L2 LINE L2 -185 3087 2817 700 190 83 48 chr1 58828717 58828879 -183835474 - MER33 DNA MER1_type -2285 300 122 2192 107 3 0 chr1 58828879 58829170 -183835183 + AluSq SINE Alu 1 292 -21 700 190 83 48 chr1 58829170 58829296 -183835057 - MER33 DNA MER1_type -2463 122 2 264 346 37 9 chr1 58829312 58829419 -183834934 - MIR SINE MIR -124 138 29 1740 176 0 10 chr1 58829509 58829816 -183834537 - AluJb SINE Alu -8 304 1 434 322 21 7 chr1 58829910 58830053 -183834300 + L3 LINE CR1 1427 1571 -6 330 236 29 71 chr1 58830681 58830821 -183833532 + L2 LINE L2 2922 3055 -217 250 342 196 0 chr1 58831091 58831249 -183833104 + MIR SINE MIR 73 261 -1 204 305 68 34 chr1 58831255 58831373 -183832980 + L2 LINE L2 3109 3230 -42 715 357 57 19 chr1 58831638 58832008 -183832345 + L3 LINE CR1 585 968 -609 476 267 42 42 chr1 58832200 58832365 -183831988 + L3 LINE CR1 1298 1462 -115 518 304 11 37 chr1 58832863 58833054 -183831299 - L3 LINE CR1 -103 1474 1289 296 332 79 36 chr1 58833614 58833867 -183830486 - L2 LINE L2 -31 3241 2978 234 45 68 0 chr1 58834405 58834449 -183829904 + (CA)n Simple_repeat Simple_repeat 2 48 0 198 150 0 0 chr1 58834785 58834825 -183829528 + (CA)n Simple_repeat Simple_repeat 1 40 0 1225 141 0 84 chr1 58837019 58837246 -183827107 - AluJo SINE Alu -18 294 87 1377 255 127 28 chr1 58837665 58838202 -183826151 + MLT1E LTR MaLR 4 593 0 1841 158 0 7 chr1 58838348 58838651 -183825702 + AluJo SINE Alu 1 301 -11 2346 93 0 0 chr1 58839053 58839364 -183824989 + AluSx SINE Alu 2 312 0 431 344 55 18 chr1 58839381 58839544 -183824809 - MIR SINE MIR -31 231 63 286 344 56 8 chr1 58840823 58840948 -183823405 - MER5B DNA MER1_type -26 152 22 288 239 183 0 chr1 58841491 58841562 -183822791 - MIR SINE MIR -155 107 24 277 341 112 18 chr1 58841668 58841838 -183822515 + L2 LINE L2 3087 3272 0 * 1343 297 153 19 chr1 58841836 58842720 -183821633 - L2 LINE L2 0 3313 2205 1889 152 0 3 chr1 58842720 58843016 -183821337 + AluJb SINE Alu 1 295 -17 1343 297 153 19 chr1 58843016 58843405 -183820948 - L2 LINE L2 -1108 2205 1869 340 194 0 0 chr1 58843449 58843511 -183820842 - L2 LINE L2 -212 3060 2999 263 290 97 32 chr1 58843724 58843879 -183820474 - MIR3 SINE MIR -21 187 23 683 247 107 0 chr1 58843993 58844171 -183820182 - MIR SINE MIR -46 216 20 621 247 18 85 chr1 58844698 58844870 -183819483 + MIR SINE MIR 2 156 -106 1685 158 73 3 chr1 58844870 58845186 -183819167 - MER44D DNA MER2_type 0 609 2 621 247 18 85 chr1 58845186 58845253 -183819100 + MIR SINE MIR 156 226 -36 268 161 0 169 chr1 58845821 58845945 -183818408 - MER53 DNA DNA -86 103 1 435 258 8 45 chr1 58846095 58846227 -183818126 - MIR3 SINE MIR -1 207 81 249 58 58 0 chr1 58846311 58846363 -183817990 + (TA)n Simple_repeat Simple_repeat 1 55 0 1914 93 3 24 chr1 58846363 58846652 -183817701 - AluSc SINE Alu -26 283 1 352 141 13 77 chr1 58846695 58846773 -183817580 - L1MCa LINE L1 -4359 2067 1995 256 94 38 0 chr1 58846776 58846829 -183817524 + (TA)n Simple_repeat Simple_repeat 2 56 0 1836 164 0 0 chr1 58846829 58847121 -183817232 - AluJo SINE Alu -14 298 7 2919 258 124 77 chr1 58847129 58847165 -183817188 - HAL1 LINE L1 -21 2486 2453 1995 139 0 0 chr1 58847165 58847460 -183816893 + AluSx SINE Alu 1 295 -17 2919 258 124 77 chr1 58847460 58848694 -183815659 - HAL1 LINE L1 -54 2453 1278 852 148 0 15 chr1 58848694 58848829 -183815524 - FLAM_C SINE Alu 0 133 1 770 132 29 0 chr1 58848833 58848969 -183815384 - L1MA4A LINE L1 -4 6299 6160 2919 258 124 77 chr1 58848969 58850068 -183814285 - HAL1 LINE L1 -1231 1276 1 449 269 168 29 chr1 58850814 58851022 -183813331 - MIR SINE MIR -6 256 20 2002 154 104 45 chr1 58851208 58851648 -183812705 + MER31B LTR ERV1 1 466 0 189 333 80 13 chr1 58851719 58851869 -183812484 + L2 LINE L2 2416 2575 -739 264 279 45 36 chr1 58852318 58852429 -183811924 - MIR SINE MIR -63 145 34 680 217 0 14 chr1 58853020 58853158 -183811195 - MIR SINE MIR -9 253 118 196 277 60 12 chr1 58853250 58853333 -183811020 - MIR SINE MIR -61 147 61 709 189 8 8 chr1 58853548 58853683 -183810670 + MIR SINE MIR 41 174 -58 220 237 150 95 chr1 58854065 58854192 -183810161 + MIR3 SINE MIR 22 155 -53 496 179 0 0 chr1 58854452 58854530 -183809823 - AluJ/FLAM SINE Alu -233 79 2 290 324 54 27 chr1 58854726 58854911 -183809442 - L2 LINE L2 -4 3309 3120 249 224 15 30 chr1 58855038 58855105 -183809248 + MER103 DNA DNA 17 82 -84 518 233 122 50 chr1 58855105 58855285 -183809068 + MIR SINE MIR 41 233 -29 265 280 189 45 chr1 58855453 58855702 -183808651 + L2 LINE L2 2794 3083 -230 994 151 0 47 chr1 58856979 58857012 -183807341 - MER3 DNA MER1_type -38 124 91 1372 207 10 7 chr1 58857012 58857302 -183807051 + AluJb SINE Alu 1 291 -21 994 151 0 47 chr1 58857302 58857440 -183806913 - MER3 DNA MER1_type -71 91 8 221 321 37 28 chr1 58857441 58857550 -183806803 + MIR SINE MIR 31 140 -122 5391 190 13 23 chr1 58857727 58857954 -183806399 - MER45B DNA AcHobo -541 1040 812 2262 95 0 0 chr1 58857954 58858258 -183806095 - AluSx SINE Alu -8 304 1 5391 190 13 23 chr1 58858258 58859078 -183805275 - MER45B DNA AcHobo -769 812 3 808 258 68 24 chr1 58859261 58859490 -183804863 + MIR SINE MIR 4 246 -16 180 0 0 0 chr1 58859490 58859510 -183804843 + (TCTA)n Simple_repeat Simple_repeat 4 23 0 808 258 68 24 chr1 58859510 58859528 -183804825 + MIR SINE MIR 246 262 0 407 239 22 22 chr1 58859527 58859619 -183804734 - L2 LINE L2 -33 3280 3189 * 1518 266 91 55 chr1 58860147 58861229 -183803124 - L1ME3 LINE L1 -305 5857 4816 2199 95 0 16 chr1 58861229 58861534 -183802819 + AluSq SINE Alu 3 302 -11 1518 266 91 55 chr1 58861534 58861865 -183802488 - L1ME3 LINE L1 -1346 4816 4498 2174 116 0 0 chr1 58861865 58862175 -183802178 - AluSg SINE Alu 0 310 1 1518 266 91 55 chr1 58862175 58862606 -183801747 - L1ME3 LINE L1 -1664 4498 3906 1742 145 37 0 chr1 58862606 58862903 -183801450 - AluJb SINE Alu -4 308 1 1518 266 91 55 chr1 58862903 58863038 -183801315 - L1ME3 LINE L1 -2256 3906 3777 1043 109 0 0 chr1 58863662 58863809 -183800544 + AluSg/x SINE Alu 159 305 -4 1733 166 0 10 chr1 58864029 58864325 -183800028 - AluJo SINE Alu -19 293 1 21 0 0 0 chr1 58864382 58864403 -183799950 + AT_rich Low_complexity Low_complexity 1 21 0 205 211 0 0 chr1 58864712 58864750 -183799603 + T-rich Low_complexity Low_complexity 1 38 0 2056 154 34 45 chr1 58865128 58865658 -183798695 + MER52A LTR ERV1 730 1278 0 4284 144 41 4 chr1 58865831 58866518 -183797835 + MER50 LTR ERV1 1 712 -22 504 87 0 0 chr1 58866626 58866695 -183797658 + Alu SINE Alu 2 70 -248 877 87 71 0 chr1 58866695 58866822 -183797531 + MSTA LTR MaLR 292 427 -1 3894 204 34 12 chr1 58867073 58867914 -183796439 - L1MB8 LINE L1 -9 6169 5306 2156 88 0 10 chr1 58867914 58868209 -183796144 + AluSc SINE Alu 1 292 -17 3894 204 34 12 chr1 58868209 58868260 -183796093 - L1MB8 LINE L1 -872 5306 5258 961 174 0 27 chr1 58868274 58868458 -183795895 - FRAM SINE Alu 0 176 1 1959 142 3 0 chr1 58868471 58868781 -183795572 + AluSx SINE Alu 1 311 -1 1381 189 8 76 chr1 58868781 58869092 -183795261 - L1MB8 LINE L1 -894 5252 4970 1314 203 43 14 chr1 58869092 58869368 -183794985 + AluJo SINE Alu 1 284 -28 1381 189 8 76 chr1 58869368 58869438 -183794915 - L1MB8 LINE L1 -1176 4970 4897 2342 171 19 19 chr1 58869440 58869866 -183794487 + MSTB LTR MaLR 1 426 0 422 256 115 59 chr1 58869868 58870138 -183794215 - L1MB8 LINE L1 -3321 2825 2541 2261 67 0 20 chr1 58870148 58870448 -183793905 + AluY SINE Alu 1 294 -17 230 250 0 18 chr1 58870796 58870852 -183793501 - Tigger5 DNA MER2_type -2268 55 1 21 0 0 0 chr1 58870859 58870880 -183793473 + AT_rich Low_complexity Low_complexity 1 21 0 180 243 0 0 chr1 58870931 58870968 -183793385 + L2 LINE L2 3264 3300 -13 2196 111 0 0 chr1 58871712 58872009 -183792344 + AluSg SINE Alu 1 297 -13 1505 243 117 50 chr1 58872021 58872136 -183792217 + L1MC4a LINE L1 5192 5298 -848 2671 82 38 16 chr1 58872136 58872502 -183791851 + THE1C LTR MaLR 1 374 -1 1505 243 117 50 chr1 58872502 58872632 -183791721 + L1MC4a LINE L1 5298 4926 -1220 1631 189 3 3 chr1 58872632 58872933 -183791420 + AluJb SINE Alu 1 301 -11 1505 243 117 50 chr1 58872933 58873447 -183790906 + L1MC4a LINE L1 4925 5403 -743 691 233 0 0 chr1 58873474 58873603 -183790750 - MER5A DNA MER1_type 0 189 61 194 174 22 0 chr1 58873603 58873649 -183790704 + CT-rich Low_complexity Low_complexity 2 48 0 780 190 0 73 chr1 58873651 58873830 -183790523 - FRAM SINE Alu 0 166 1 372 176 29 0 chr1 58873830 58873898 -183790455 - MER5A DNA MER1_type -111 78 9 455 274 127 5 chr1 58874047 58874244 -183790109 + L2 LINE L2 3081 3301 -12 1747 156 40 7 chr1 58874245 58874547 -183789806 + AluSx SINE Alu 1 312 0 376 183 21 11 chr1 58874552 58874645 -183789708 + GA-rich Low_complexity Low_complexity 4 97 0 277 253 53 32 chr1 58874705 58874800 -183789553 - MER5B DNA MER1_type -26 152 56 1770 183 0 0 chr1 58875097 58875392 -183788961 + AluJo SINE Alu 4 298 -14 379 220 184 23 chr1 58875541 58875714 -183788639 + MIR SINE MIR 4 195 -62 476 218 105 8 chr1 58875804 58875937 -183788416 + Charlie8 DNA MER1_type 4 149 -2268 325 285 146 15 chr1 58876099 58876236 -183788117 - MIR SINE MIR -50 212 58 746 251 89 0 chr1 58876237 58876456 -183787897 - MIR SINE MIR 0 262 20 314 274 0 0 chr1 58876582 58876655 -183787698 + L2 LINE L2 3221 3293 -20 686 152 0 0 chr1 58876929 58877034 -183787319 + AluJb SINE Alu 208 312 0 235 258 279 21 chr1 58877198 58877438 -183786915 - L2 LINE L2 -5 3267 2966 2085 126 0 3 chr1 58877799 58878101 -183786252 + AluSp SINE Alu 1 301 -12 1594 192 95 18 chr1 58878242 58878397 -183785956 + L1PB4 LINE L1 5720 5862 -438 3301 204 18 61 chr1 58878397 58879410 -183784943 - LTR5 LTR ERVK 0 969 1 1594 192 95 18 chr1 58879410 58879767 -183784586 + L1PB4 LINE L1 5862 6279 -21 353 167 0 25 chr1 58879770 58879845 -183784508 + Alu SINE Alu 1 55 -245 444 241 121 27 chr1 58880381 58880705 -183783648 + LTR43 LTR ERV1 193 456 -56 372 221 124 18 chr1 58880747 58880860 -183783493 + MIR3 SINE MIR 43 167 -41 215 289 0 53 chr1 58880943 58881019 -183783334 + L2 LINE L2 3201 3272 0 235 298 107 16 chr1 58881034 58881155 -183783198 - MIR SINE MIR -12 250 119 349 216 11 45 chr1 58881268 58881356 -183782997 + MER21B LTR ERV1 22 106 -757 * 478 204 32 0 chr1 58881354 58881447 -183782906 + MER21B LTR ERV1 19 114 -749 2094 86 0 54 chr1 58881447 58881760 -183782593 - AluY SINE Alu -15 296 1 23 0 0 0 chr1 58881950 58881973 -183782380 + AT_rich Low_complexity Low_complexity 1 23 0 602 235 64 16 chr1 58882222 58882409 -183781944 + L2 LINE L2 3118 3313 0 2223 92 3 0 chr1 58882495 58882788 -183781565 + AluSq SINE Alu 1 294 -19 424 271 89 12 chr1 58883154 58883352 -183781001 - MIR SINE MIR -1 261 4 966 280 16 0 chr1 58883601 58883851 -183780502 + L2 LINE L2 2369 2622 -692 854 251 15 20 chr1 58883853 58884056 -183780297 - MIR SINE MIR 0 262 61 * 1345 254 41 34 chr1 58884050 58884228 -183780125 + L2 LINE L2 2630 2805 -508 1036 226 14 23 chr1 58884228 58884449 -183779904 + MER58A DNA MER1_type 4 222 -2 1345 254 41 34 chr1 58884449 58884945 -183779408 + L2 LINE L2 2805 3312 -1 415 259 80 22 chr1 58885165 58885299 -183779054 - MIR SINE MIR -54 154 12 1797 168 0 26 chr1 58886130 58886434 -183777919 - AluJb SINE Alu -12 300 5 474 310 94 15 chr1 58886599 58886802 -183777551 + MIR SINE MIR 12 230 -32 2227 177 128 17 chr1 58887556 58888024 -183776329 - MLT2B1 LTR ERVL 0 520 1 366 123 0 0 chr1 58888144 58888201 -183776152 + (TCCCC)n Simple_repeat Simple_repeat 4 60 0 499 181 0 15 chr1 58888202 58888335 -183776018 + (CA)n Simple_repeat Simple_repeat 1 131 0 558 294 40 0 chr1 58888614 58888815 -183775538 + LTR33 LTR ERVL 4 212 -309 444 267 20 27 chr1 58888850 58889000 -183775353 + LTR33 LTR ERVL 355 503 -18 1533 84 39 81 chr1 58889207 58889279 -183775074 - THE1C LTR MaLR 0 375 302 2243 95 37 0 chr1 58889279 58889574 -183774779 - AluSx SINE Alu -6 306 1 1533 84 39 81 chr1 58889574 58889786 -183774567 - THE1C LTR MaLR -73 302 103 1729 177 48 50 chr1 58889926 58890322 -183774031 + MLT2D LTR ERVL 1 395 -19 216 322 150 50 chr1 58890711 58890891 -183773462 - L2 LINE L2 -5 3267 3070 482 271 109 45 chr1 58891795 58892016 -183772337 + MIR SINE MIR 13 247 -15 703 260 97 0 chr1 58892405 58892632 -183771721 - L2 LINE L2 -1355 1959 1711 199 236 9 109 chr1 58892689 58892799 -183771554 - L2 LINE L2 -792 2522 2424 6642 100 21 26 chr1 58893084 58894043 -183770310 - LTR13 LTR ERVK 0 954 1 415 256 178 0 chr1 58894917 58895046 -183769307 - MER5A DNA MER1_type -1 188 37 461 316 40 34 chr1 58895079 58895256 -183769097 + MER5B DNA MER1_type 1 178 0 233 289 60 0 chr1 58895303 58895386 -183768967 - L2 LINE L2 0 3313 3226 302 387 8 0 chr1 58895796 58895915 -183768438 - L2 LINE L2 -599 2715 2596 288 296 38 75 chr1 58896006 58896165 -183768188 - MIR SINE MIR -68 194 42 1831 165 10 3 chr1 58896286 58896577 -183767776 + AluSx SINE Alu 1 293 -19 309 315 56 30 chr1 58897369 58897566 -183766787 - MLT1J LTR MaLR -77 434 233 354 308 33 0 chr1 58897859 58897950 -183766403 - MIR SINE MIR -89 173 80 690 117 97 35 chr1 58898061 58898310 -183766043 + MER1B DNA MER1_type 1 339 0 254 382 46 17 chr1 58898595 58898836 -183765517 - L2 LINE L2 -218 3054 2807 2056 119 6 38 chr1 58899201 58899520 -183764833 + AluSx SINE Alu 1 309 -3 225 325 84 87 chr1 58899931 58900266 -183764087 - L2 LINE L2 -44 3269 2936 1274 94 133 0 chr1 58900337 58900540 -183763813 - MER30 DNA MER1_type 0 230 1 306 118 20 0 chr1 58901038 58901089 -183763264 + MER75 DNA T2_type 463 514 0 366 244 13 13 chr1 58901151 58901229 -183763124 - MIR SINE MIR -113 95 18 225 294 79 48 chr1 58901642 58901768 -183762585 + L3 LINE CR1 1428 1557 -20 227 266 0 38 chr1 58904202 58904281 -183760072 - MIR3 SINE MIR -14 194 119 * 331 290 77 71 chr1 58904257 58904426 -183759927 + MIR3 SINE MIR 25 194 -14 2044 130 24 0 chr1 58904583 58904876 -183759477 - AluSx SINE Alu -12 300 1 1022 120 0 0 chr1 58904879 58905012 -183759341 - AluJo/FLAM SINE Alu -179 133 1 21 0 0 0 chr1 58906168 58906189 -183758164 + AT_rich Low_complexity Low_complexity 1 21 0 1703 204 90 21 chr1 58906865 58907297 -183757056 + MLT1C LTR MaLR 6 467 0 604 247 156 35 chr1 58907536 58907767 -183756586 - MIR SINE MIR -2 260 2 197 269 109 0 chr1 58908452 58908571 -183755782 + L2 LINE L2 2827 2958 -314 4230 244 124 31 chr1 58908707 58910325 -183754028 - HAL1 LINE L1 0 2507 1042 1964 136 57 41 chr1 58910325 58910694 -183753659 + THE1C LTR MaLR 1 375 0 10066 121 19 37 chr1 58910696 58911592 -183752761 + THE1C-int LTR MaLR 3 859 -721 2421 87 3 7 chr1 58911592 58911902 -183752451 + AluY SINE Alu 1 309 -2 10066 121 19 37 chr1 58911902 58912612 -183751741 + THE1C-int LTR MaLR 859 1580 0 1862 134 68 44 chr1 58912612 58912978 -183751375 + THE1C LTR MaLR 1 375 0 4230 244 124 31 chr1 58912978 58913147 -183751206 - HAL1 LINE L1 -1465 1042 890 2137 131 0 7 chr1 58913147 58913452 -183750901 - AluSc SINE Alu -6 303 1 4230 244 124 31 chr1 58913452 58913510 -183750843 - HAL1 LINE L1 -1617 890 419 705 241 64 5 chr1 58913554 58913774 -183750579 - HAL1 LINE L1 -2200 307 75 2062 179 81 43 chr1 58914487 58914770 -183749583 + L1MB7 LINE L1 5400 5671 -513 1911 151 20 14 chr1 58914770 58915062 -183749291 + AluJo SINE Alu 1 294 -18 2062 179 81 43 chr1 58915062 58915223 -183749130 + L1MB7 LINE L1 5671 5868 -316 2026 99 0 0 chr1 58915223 58915486 -183748867 + AluSq SINE Alu 39 301 -12 2062 179 81 43 chr1 58915486 58915549 -183748804 + L1MB7 LINE L1 5868 5927 -257 2155 123 16 3 chr1 58917281 58917590 -183746763 - AluSq SINE Alu 0 313 1 1923 163 0 23 chr1 58917590 58917753 -183746600 - AluJo SINE Alu -18 294 140 2315 119 0 0 chr1 58917753 58918055 -183746298 - AluSg SINE Alu -8 302 1 1923 163 0 23 chr1 58918055 58918192 -183746161 - AluJo SINE Alu -172 140 1 363 308 143 15 chr1 58918409 58918542 -183745811 - MIR3 SINE MIR -13 195 46 225 253 92 23 chr1 58918846 58918933 -183745420 + L3 LINE CR1 1475 1567 -10 2387 100 17 0 chr1 58919339 58919640 -183744713 + AluSx SINE Alu 1 306 -6 554 256 29 139 chr1 58920529 58920750 -183743603 + MIR SINE MIR 13 198 -64 2184 121 7 0 chr1 58920750 58921055 -183743298 + AluSx SINE Alu 1 307 -5 554 256 29 139 chr1 58921055 58921114 -183743239 + MIR SINE MIR 198 262 0 1995 173 52 0 chr1 58921219 58921588 -183742765 + MER82 DNA MER2_type 8 395 -258 220 267 57 76 chr1 58922008 58922113 -183742240 + MIR SINE MIR 80 182 -80 497 249 146 24 chr1 58922139 58922304 -183742049 + MIR SINE MIR 22 206 -56 279 296 230 25 chr1 58922738 58922934 -183741419 + MIR SINE MIR 1 236 -26 1832 99 60 0 chr1 58924895 58925178 -183739175 + L1MA5A LINE L1 5998 6297 0 22 0 0 0 chr1 58925928 58925950 -183738403 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 58926358 58926386 -183737967 + GC_rich Low_complexity Low_complexity 1 28 0 11767 150 28 34 chr1 58927042 58927216 -183737137 + L1M1 LINE L1 16 190 -7375 2222 146 0 0 chr1 58927216 58927524 -183736829 + AluSx SINE Alu 1 308 -4 11767 150 28 34 chr1 58927524 58930213 -183734140 + L1M1 LINE L1 190 3222 -4343 1930 143 31 3 chr1 58930214 58930508 -183733845 + AluJb SINE Alu 1 302 -10 315 71 0 0 chr1 58930525 58930567 -183733786 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 337 172 17 0 chr1 58930567 58930625 -183733728 + AluJ/FLAM SINE Alu 2 60 -242 2339 96 0 7 chr1 58930909 58931211 -183733142 + AluSg SINE Alu 1 300 -10 1659 73 0 9 chr1 58931957 58932177 -183732176 - AluY SINE Alu -11 300 83 1005 91 8 0 chr1 58932180 58932312 -183732041 - AluSq/x SINE Alu -179 133 1 1772 182 0 0 chr1 58932396 58932703 -183731650 + AluJb SINE Alu 1 307 -5 331 289 16 33 chr1 58932822 58932943 -183731410 - L2 LINE L2 -9 3304 3186 1260 195 9 74 chr1 58933175 58933498 -183730855 - AluJo SINE Alu -10 302 1 226 227 57 23 chr1 58933559 58933647 -183730706 - L1ME LINE L1 -286 5880 5790 581 264 180 20 chr1 58933874 58934815 -183729538 - L1ME LINE L1 -704 5462 4328 702 296 133 48 chr1 58935041 58935582 -183728771 - L2 LINE L2 -4 3309 2688 2125 110 0 0 chr1 58935582 58935881 -183728472 + AluSx SINE Alu 5 303 -9 702 296 133 48 chr1 58935881 58935955 -183728398 - L2 LINE L2 -625 2688 2622 1404 190 23 99 chr1 58936718 58937113 -183727240 + MLT1A1 LTR MaLR 1 365 0 2346 76 0 3 chr1 58937130 58937433 -183726920 - AluY SINE Alu -9 302 1 317 329 59 47 chr1 58937662 58937832 -183726521 + MIR SINE MIR 21 192 -70 530 261 31 51 chr1 58937929 58938124 -183726229 - MIR SINE MIR -27 235 45 543 316 83 53 chr1 58938993 58939514 -183724839 + L2 LINE L2 2612 3150 -122 297 265 102 86 chr1 58939565 58939709 -183724644 + L2 LINE L2 2457 2608 -706 2228 90 7 0 chr1 58939709 58940008 -183724345 - AluSx SINE Alu -11 301 1 297 265 102 86 chr1 58940008 58940108 -183724245 + L2 LINE L2 2608 2705 -609 402 296 91 94 chr1 58940344 58940958 -183723395 + L1MEd LINE L1 700 1296 -1194 2414 83 3 0 chr1 58941037 58941349 -183723004 - AluSp SINE Alu 0 313 1 2007 120 7 0 chr1 58941351 58941651 -183722702 - AluSq SINE Alu -11 302 1 257 336 28 9 chr1 58941873 58941980 -183722373 + MIR3 SINE MIR 4 112 -96 427 168 181 19 chr1 58942332 58942367 -183721986 - L1MC5 LINE L1 -330 7631 7603 1626 145 64 0 chr1 58942367 58942650 -183721703 - AluSg SINE Alu -9 301 1 427 168 181 19 chr1 58942650 58942769 -183721584 - L1MC5 LINE L1 -358 7603 7452 2318 46 7 0 chr1 58942878 58943163 -183721190 + AluSq SINE Alu 17 303 -10 1025 294 104 15 chr1 58943175 58943670 -183720683 + L2 LINE L2 2776 3312 -1 624 219 125 12 chr1 58944683 58944843 -183719510 + MER5B DNA MER1_type 1 178 0 644 81 11 0 chr1 58945109 58945196 -183719157 - AluSp/q SINE Alu -18 295 208 368 169 0 0 chr1 58945196 58945255 -183719098 - AluJo SINE Alu -166 136 78 1660 64 0 36 chr1 58945255 58945475 -183718878 - AluSx SINE Alu -100 212 1 300 290 45 0 chr1 58945574 58945696 -183718657 + MIR SINE MIR 57 183 -63 1989 146 10 0 chr1 58945796 58946105 -183718248 + AluJb SINE Alu 1 312 0 199 280 65 21 chr1 58946114 58946207 -183718146 - MIR SINE MIR -16 246 150 285 304 90 90 chr1 58946433 58946969 -183717384 - L2 LINE L2 -7 3265 2610 1113 145 0 0 chr1 58946970 58947142 -183717211 + FRAM SINE Alu 1 168 -8 648 258 78 9 chr1 58947200 58947417 -183716936 - L2 LINE L2 -1228 2086 1855 459 303 27 43 chr1 58947469 58947657 -183716696 - L2 LINE L2 -188 3084 2900 382 203 203 54 chr1 58947639 58947787 -183716566 + MIR SINE MIR 78 247 -15 * 207 0 0 0 chr1 58948309 58948332 -183716021 + (TA)n Simple_repeat Simple_repeat 2 24 0 341 329 187 47 chr1 58949085 58949465 -183714888 + L2 LINE L2 2836 3268 -4 186 182 23 23 chr1 58949804 58949848 -183714505 + MIR3 SINE MIR 163 206 -2 225 132 0 0 chr1 58951860 58951898 -183712455 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 279 0 0 chr1 58952368 58952429 -183711924 + (CA)n Simple_repeat Simple_repeat 1 61 0 482 325 48 24 chr1 58952736 58952945 -183711408 + L2 LINE L2 2868 3081 -191 407 323 121 30 chr1 58952961 58953193 -183711160 - L2 LINE L2 -3 3269 3017 245 356 156 0 chr1 58953220 58953355 -183710998 + L2 LINE L2 3117 3272 0 328 256 0 13 chr1 58953506 58953584 -183710769 + L2 LINE L2 3236 3312 -1 646 163 11 22 chr1 58953592 58953770 -183710583 + GA-rich Low_complexity Low_complexity 1 176 0 485 303 168 26 chr1 58954075 58954379 -183709974 + L2 LINE L2 2926 3272 0 442 307 43 7 chr1 58954594 58954734 -183709619 + L3 LINE CR1 1370 1514 -63 449 249 102 80 chr1 58954797 58954867 -183709486 + L1M4 LINE L1 4117 4184 -1962 2070 125 7 0 chr1 58954867 58955172 -183709181 + AluJb SINE Alu 3 309 -3 449 249 102 80 chr1 58955172 58955351 -183709002 + L1M4 LINE L1 4184 4358 -1788 1793 146 3 32 chr1 58955351 58955667 -183708686 + AluJo SINE Alu 1 307 -5 449 249 102 80 chr1 58955667 58955915 -183708438 + L1M4 LINE L1 4358 4626 -1520 517 311 66 23 chr1 58955992 58956610 -183707743 + L1M4 LINE L1 4759 5403 -743 220 269 103 13 chr1 58958416 58958494 -183705859 + L2 LINE L2 2999 3083 -189 193 312 110 7 chr1 58958994 58959148 -183705205 - L2 LINE L2 -1158 2156 1987 2278 143 11 82 chr1 58959487 58959963 -183704390 - L1PB3 LINE L1 0 6154 5713 1760 178 3 0 chr1 58959981 58960284 -183704069 - AluJo SINE Alu -8 304 1 338 314 86 14 chr1 58960292 58960432 -183703921 - MIR SINE MIR -11 251 102 895 138 12 19 chr1 58960455 58960615 -183703738 - FRAM SINE Alu -16 160 2 384 257 222 21 chr1 58960957 58961101 -183703252 + MIR SINE MIR 2 174 -88 201 284 27 0 chr1 58962109 58962183 -183702170 + (CATATA)n Simple_repeat Simple_repeat 4 79 0 205 311 68 0 chr1 58962450 58962524 -183701829 + L2 LINE L2 3145 3223 -49 180 350 0 0 chr1 58962620 58962680 -183701673 - L2 LINE L2 -20 3252 3193 551 211 160 23 chr1 58963806 58963981 -183700372 + LTR33 LTR ERVL 316 514 -7 752 288 86 29 chr1 58964416 58964694 -183699659 + L3 LINE CR1 1282 1575 -2 208 257 97 62 chr1 58965455 58965568 -183698785 - L2 LINE L2 -235 3037 2921 290 354 119 12 chr1 58965639 58965882 -183698471 - L2 LINE L2 -493 2821 2553 291 269 113 113 chr1 58965949 58966313 -183698040 + L2 LINE L2 2152 2515 -799 1819 147 13 20 chr1 58967919 58968219 -183696134 + AluJb SINE Alu 1 298 -14 187 266 64 83 chr1 58968242 58968351 -183696002 - L2 LINE L2 -455 2859 2753 191 214 24 0 chr1 58968881 58968923 -183695430 + MIR SINE MIR 44 86 -122 2279 243 87 52 chr1 58969339 58970038 -183694315 + L2 LINE L2 2267 3013 -300 1659 179 10 7 chr1 58970038 58970345 -183694008 - AluJo SINE Alu 0 312 5 2279 243 87 52 chr1 58970345 58970657 -183693696 + L2 LINE L2 3013 3313 0 3044 170 47 19 chr1 58970884 58971454 -183692899 + LTR60 LTR ERV1 1 586 0 223 317 30 0 chr1 58972257 58972358 -183691995 - MIR SINE MIR -88 120 17 298 256 179 30 chr1 58972446 58972614 -183691739 - L3 LINE CR1 -14 1563 1371 216 346 56 0 chr1 58972688 58972795 -183691558 - L3 LINE CR1 -425 1152 1040 316 284 10 29 chr1 58972801 58972903 -183691450 - L3 LINE CR1 -638 939 840 620 259 12 6 chr1 58976607 58976777 -183687576 - MIR3 SINE MIR -31 177 7 442 311 50 29 chr1 58977172 58977449 -183686904 + THE1-int LTR MaLR 537 819 -761 1912 76 66 46 chr1 58978186 58978489 -183685864 - AluSg SINE Alu -1 309 1 315 261 63 27 chr1 58979210 58979321 -183685032 + L2 LINE L2 3132 3246 -26 471 281 114 18 chr1 58979683 58979850 -183684503 + MIR SINE MIR 10 192 -70 243 233 33 0 chr1 58980500 58980560 -183683793 + MIR SINE MIR 65 126 -136 181 304 203 0 chr1 58980967 58981036 -183683317 - MIR SINE MIR -31 231 149 791 234 141 22 chr1 58981048 58981275 -183683078 + MIR SINE MIR 8 261 -1 182 328 66 0 chr1 58981306 58981367 -183682986 - L2 LINE L2 -1 3271 3207 244 208 179 47 chr1 58981881 58981987 -183682366 + MIR3 SINE MIR 4 123 -85 396 283 28 62 chr1 58982055 58982200 -183682153 + MER5A DNA MER1_type 50 189 0 1585 195 23 0 chr1 58982466 58982768 -183681585 + MLT1A1 LTR MaLR 1 309 -56 277 149 36 138 chr1 58982925 58983120 -183681233 + (CTTA)n Simple_repeat Simple_repeat 3 177 0 263 154 36 138 chr1 58983257 58983452 -183680901 + (CTTA)n Simple_repeat Simple_repeat 3 177 0 266 279 35 32 chr1 58983490 58983838 -183680515 + (CCTA)n Simple_repeat Simple_repeat 1 349 0 269 271 34 34 chr1 58983854 58984031 -183680322 + (CCTA)n Simple_repeat Simple_repeat 4 180 0 455 222 0 0 chr1 58984159 58984249 -183680104 - MIR SINE MIR -117 145 56 365 302 74 13 chr1 58984602 58984751 -183679602 - MIR3 SINE MIR -7 201 44 421 314 45 19 chr1 58984892 58985048 -183679305 - MIR SINE MIR -90 172 13 540 311 90 20 chr1 58985205 58985449 -183678904 + MIR SINE MIR 2 262 0 217 305 117 31 chr1 58986097 58986225 -183678128 + MIR3 SINE MIR 67 205 -3 511 237 51 0 chr1 58986698 58986816 -183677537 - MIR SINE MIR -58 204 81 249 273 0 45 chr1 58987436 58987524 -183676829 + MIR SINE MIR 64 147 -61 319 294 76 8 chr1 58988002 58988121 -183676232 + MIR SINE MIR 62 188 -74 180 111 0 0 chr1 58988335 58988362 -183675991 + (TC)n Simple_repeat Simple_repeat 2 28 0 575 312 0 0 chr1 58988859 58989000 -183675353 + MIR SINE MIR 78 218 -44 202 299 15 0 chr1 58989741 58989808 -183674545 + L2 LINE L2 2993 3060 -212 198 0 0 0 chr1 58990095 58990117 -183674236 + (TCC)n Simple_repeat Simple_repeat 3 24 0 387 314 81 23 chr1 58990119 58990291 -183674062 + MIR SINE MIR 81 262 0 211 305 95 11 chr1 58990340 58990435 -183673918 - MIR SINE MIR -89 119 17 422 275 38 44 chr1 58990824 58990984 -183673369 + MIR3 SINE MIR 14 172 -36 1146 206 32 5 chr1 58991447 58991665 -183672688 - MER58A DNA MER1_type 0 224 1 385 236 179 7 chr1 58992088 58992228 -183672125 - MIR3 SINE MIR -22 186 23 447 304 158 0 chr1 58992450 58992634 -183671719 - MIR SINE MIR -8 254 42 357 296 46 0 chr1 58993200 58993308 -183671045 - MIR SINE MIR -39 223 111 407 287 108 48 chr1 58994191 58994358 -183669995 + MIR SINE MIR 20 196 -66 274 360 13 27 chr1 58994417 58994567 -183669786 + MIR3 SINE MIR 58 205 -3 344 280 64 1 chr1 58994814 58994946 -183669407 - MIR SINE MIR -61 147 7 315 224 130 62 chr1 58994943 58995104 -183669249 - L2 LINE L2 -187 3085 2914 * 531 235 59 0 chr1 58995441 58995594 -183668759 - MER103 DNA DNA -4 162 1 256 288 25 0 chr1 58995676 58995756 -183668597 - MIR SINE MIR -56 152 71 244 190 114 25 chr1 58998722 58998801 -183665552 + MIR SINE MIR 54 139 -69 273 313 10 10 chr1 58999595 58999694 -183664659 + MIR3 SINE MIR 81 179 -29 257 325 33 8 chr1 59000625 59000745 -183663608 + MIR3 SINE MIR 34 156 -52 204 274 81 89 chr1 59001193 59001242 -183663111 - MIR SINE MIR -60 148 100 1914 135 0 30 chr1 59001242 59001546 -183662807 + AluJb SINE Alu 1 295 -17 204 274 81 89 chr1 59001546 59001620 -183662733 - MIR SINE MIR -108 100 26 283 275 14 0 chr1 59001761 59001830 -183662523 + MIR3 SINE MIR 101 170 -38 265 290 14 0 chr1 59002220 59002289 -183662064 - MIR3 SINE MIR -38 170 101 236 217 145 14 chr1 59002428 59002497 -183661856 + MIR SINE MIR 26 103 -105 1067 137 31 93 chr1 59002502 59002728 -183661625 - AluJb SINE Alu -13 299 88 391 232 143 0 chr1 59002775 59002887 -183661466 + MIR SINE MIR 76 203 -59 286 278 56 0 chr1 59003566 59003656 -183660697 - L3 LINE CR1 -51 1526 1432 452 340 76 5 chr1 59004993 59005178 -183659175 + MIR SINE MIR 50 247 -15 544 259 46 17 chr1 59006255 59006433 -183657920 + MIR3 SINE MIR 1 185 -23 190 274 20 0 chr1 59006698 59006749 -183657604 - MIR SINE MIR -50 212 161 215 350 71 7 chr1 59007826 59007966 -183656387 - L3 LINE CR1 -70 1507 1359 188 241 36 48 chr1 59007992 59008075 -183656278 - L2 LINE L2 -12 3260 3179 471 295 47 42 chr1 59008641 59008809 -183655544 + MIR SINE MIR 15 186 -76 2213 108 0 0 chr1 59008809 59009104 -183655249 + AluSx SINE Alu 1 295 -17 471 295 47 42 chr1 59009104 59009128 -183655225 + MIR SINE MIR 186 208 -54 353 284 9 37 chr1 59009191 59009300 -183655053 - MIR SINE MIR -65 197 92 279 252 217 9 chr1 59010185 59010300 -183654053 + MIR SINE MIR 64 202 -60 201 329 153 45 chr1 59010377 59010599 -183653754 + L3 LINE CR1 1221 1466 -111 344 209 0 0 chr1 59010604 59010671 -183653682 - L2 LINE L2 0 3272 3206 218 263 0 26 chr1 59011412 59011488 -183652865 + CT-rich Low_complexity Low_complexity 4 77 0 196 223 214 19 chr1 59011971 59012074 -183652279 - MIR3 SINE MIR -73 135 13 1652 173 25 4 chr1 59012179 59012457 -183651896 - AluJo SINE Alu -28 284 1 234 269 0 0 chr1 59013021 59013073 -183651280 + L2 LINE L2 3205 3256 -16 193 349 140 34 chr1 59013245 59013480 -183650873 - L2 LINE L2 -89 3183 2924 343 339 62 41 chr1 59014316 59014558 -183649795 + L3 LINE CR1 1275 1521 -56 568 305 99 14 chr1 59015184 59015397 -183648956 - MIR SINE MIR -17 245 15 265 333 56 16 chr1 59015916 59016042 -183648311 - MIR SINE MIR -95 167 37 326 270 9 45 chr1 59017345 59017456 -183646897 - L3b LINE CR1 -187 1396 1290 304 235 0 37 chr1 59017954 59018035 -183646318 - MIR SINE MIR -78 130 53 416 345 8 17 chr1 59018370 59018605 -183645748 + L1ME4a LINE L1 5621 5853 -268 412 140 0 0 chr1 59018756 59018813 -183645540 - AluSg/x SINE Alu -49 260 204 278 229 78 0 chr1 59018900 59019002 -183645351 + MIR SINE MIR 38 153 -74 366 271 107 8 chr1 59019821 59019943 -183644410 + MIR SINE MIR 27 143 -65 579 291 63 18 chr1 59020738 59020961 -183643392 + MIR SINE MIR 20 252 -10 361 324 75 20 chr1 59022201 59022522 -183641831 - L2 LINE L2 -212 3060 2724 251 339 101 65 chr1 59023079 59023247 -183641106 + MIR SINE MIR 79 252 -10 401 285 47 0 chr1 59023574 59023692 -183640661 + MIR SINE MIR 29 145 -63 254 259 99 0 chr1 59023738 59023819 -183640534 + L2 LINE L2 3002 3090 -182 282 287 105 21 chr1 59024709 59024852 -183639501 + MIR3 SINE MIR 13 167 -41 394 340 68 16 chr1 59025058 59025308 -183639045 + MIR SINE MIR 1 262 0 24 67 0 0 chr1 59026134 59026179 -183638174 + GC_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 59027471 59027493 -183636860 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 59027757 59027778 -183636575 + GC_rich Low_complexity Low_complexity 1 21 0 214 258 10 93 chr1 59027867 59027964 -183636389 - MER91A DNA MER1_type -40 156 68 390 235 78 20 chr1 59028298 59028451 -183635902 - L2 LINE L2 0 3272 3111 684 282 123 16 chr1 59028460 59028769 -183635584 - L2 LINE L2 -29 3284 2943 266 311 78 10 chr1 59028986 59029089 -183635264 + MIR3 SINE MIR 82 191 -17 195 42 0 0 chr1 59029122 59029146 -183635207 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 2528 74 3 0 chr1 59029146 59029456 -183634897 + AluY SINE Alu 1 311 0 309 51 0 0 chr1 59029458 59029497 -183634856 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 583 261 124 14 chr1 59029507 59029725 -183634628 + MIR SINE MIR 21 262 0 730 256 103 0 chr1 59030253 59030448 -183633905 - MIR SINE MIR 0 262 48 240 330 90 30 chr1 59030859 59031126 -183633227 + L2 LINE L2 2931 3213 -59 201 302 122 0 chr1 59031179 59031318 -183633035 - L2 LINE L2 -30 3242 3087 237 71 54 54 chr1 59031449 59031505 -183632848 + (CACTT)n Simple_repeat Simple_repeat 3 58 0 218 176 39 0 chr1 59031561 59031612 -183632741 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 370 220 141 78 chr1 59031674 59031795 -183632558 + MIR SINE MIR 34 146 -116 2401 199 30 17 chr1 59031795 59032328 -183632025 - MLT1F LTR MaLR -2 540 1 370 220 141 78 chr1 59032328 59032361 -183631992 + MIR SINE MIR 146 175 -87 2083 133 21 3 chr1 59032361 59032698 -183631655 + MER2 DNA MER2_type 1 343 -1 370 220 141 78 chr1 59032698 59032733 -183631620 + MIR SINE MIR 175 236 -26 1670 148 0 87 chr1 59033554 59033586 -183630767 - AluJb SINE Alu -2 310 277 255 61 0 0 chr1 59033586 59033619 -183630734 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 1670 148 0 87 chr1 59033619 59033918 -183630435 - AluJb SINE Alu -35 277 8 3966 159 10 33 chr1 59033918 59034854 -183629499 - L1MB3 LINE L1 -172 6011 5096 1442 196 94 188 chr1 59034897 59035085 -183629268 - HAL1 LINE L1 -403 2104 1900 3998 153 47 10 chr1 59035085 59035792 -183628561 + MER44D DNA MER2_type 1 605 0 1442 196 94 188 chr1 59035792 59036030 -183628323 - HAL1 LINE L1 -607 1900 1641 2233 131 0 0 chr1 59036030 59036336 -183628017 - AluSx SINE Alu -6 306 1 1442 196 94 188 chr1 59036336 59036594 -183627759 - HAL1 LINE L1 -866 1641 1360 870 191 7 0 chr1 59036594 59036746 -183627607 - FRAM SINE Alu -21 155 3 1442 196 94 188 chr1 59036746 59037242 -183627111 - HAL1 LINE L1 -1147 1360 896 769 283 58 11 chr1 59037241 59037922 -183626431 + L1ME3A LINE L1 5195 5962 -208 * 371 328 8 8 chr1 59038114 59038245 -183626108 - MER94 DNA DNA -3 131 1 197 0 0 67 chr1 59038308 59038338 -183626015 + (TTTTTG)n Simple_repeat Simple_repeat 5 32 0 1781 172 6 32 chr1 59038342 59038656 -183625697 - AluSx SINE Alu -6 306 1 194 251 156 39 chr1 59039076 59039307 -183625046 - L2 LINE L2 -188 3084 2827 603 207 191 21 chr1 59039791 59039979 -183624374 + MIR SINE MIR 42 261 -1 216 0 0 0 chr1 59040212 59040236 -183624117 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2392 89 52 3 chr1 59040261 59040608 -183623745 + THE1B LTR MaLR 1 364 0 181 238 0 0 chr1 59040871 59040913 -183623440 + MIR SINE MIR 81 122 -86 270 0 0 0 chr1 59041615 59041645 -183622708 + (TG)n Simple_repeat Simple_repeat 2 31 0 671 229 13 91 chr1 59042537 59042768 -183621585 + MIR SINE MIR 12 224 -38 438 289 149 35 chr1 59042869 59043070 -183621283 + MIR SINE MIR 18 241 -21 267 261 62 39 chr1 59043086 59043216 -183621137 - MIR SINE MIR -73 135 3 387 289 0 0 chr1 59043597 59043694 -183620659 - MIR SINE MIR -3 259 163 710 212 8 0 chr1 59043854 59043986 -183620367 - FLAM_A SINE Alu 0 133 1 468 207 0 113 chr1 59044240 59044390 -183619963 - Charlie8 DNA MER1_type -2203 214 82 1595 171 91 0 chr1 59044402 59044688 -183619665 + AluJo SINE Alu 1 312 0 211 240 0 0 chr1 59044896 59044946 -183619407 + L2 LINE L2 2910 2959 -313 547 294 65 20 chr1 59044960 59045205 -183619148 - L2 LINE L2 -16 3297 3042 191 225 275 38 chr1 59046036 59046116 -183618237 - MIR3 SINE MIR -52 156 58 528 311 88 32 chr1 59046732 59047108 -183617245 - L1MC4a LINE L1 -1927 5881 5485 2438 84 0 0 chr1 59047181 59047479 -183616874 + AluSc SINE Alu 5 302 -7 249 275 38 0 chr1 59047481 59047561 -183616792 + MLT1F1 LTR MaLR 56 138 -429 2275 184 76 35 chr1 59047561 59048100 -183616253 + L1MC3 LINE L1 7213 7773 -12 938 244 154 42 chr1 59048491 59048684 -183615669 - MLT1D LTR MaLR 0 505 335 2473 91 0 3 chr1 59048684 59048993 -183615360 - AluSc SINE Alu -1 308 1 938 244 154 42 chr1 59048993 59049062 -183615291 - MLT1D LTR MaLR -170 335 275 1733 146 3 87 chr1 59049062 59049385 -183614968 - AluJb SINE Alu -16 296 1 938 244 154 42 chr1 59049385 59049575 -183614778 - MLT1D LTR MaLR -230 275 1 570 322 106 0 chr1 59049780 59050025 -183614328 - LTR16A LTR ERVL 0 450 180 455 296 25 6 chr1 59050116 59050275 -183614078 - MIR SINE MIR -83 179 18 264 284 23 23 chr1 59050794 59050882 -183613471 + MIR SINE MIR 64 151 -111 209 175 0 0 chr1 59050883 59050923 -183613430 + L2 LINE L2 3217 3256 -16 512 333 81 0 chr1 59051669 59051867 -183612486 + MIR SINE MIR 49 262 0 1421 154 0 9 chr1 59052168 59052382 -183611971 + AluJo SINE Alu 1 212 -100 186 338 66 29 chr1 59053507 59053643 -183610710 - L2 LINE L2 -40 3273 3133 228 233 17 0 chr1 59053921 59053981 -183610372 + (TGAG)n Simple_repeat Simple_repeat 1 61 0 285 281 96 54 chr1 59054771 59054938 -183609415 + MIR SINE MIR 89 262 0 251 286 0 0 chr1 59054890 59054946 -183609407 - MIR SINE MIR 0 262 207 * 508 313 47 13 chr1 59055691 59055924 -183608429 + L1ME4a LINE L1 5630 5870 -251 519 115 0 0 chr1 59055925 59056003 -183608350 - AluJb SINE Alu -12 300 223 1275 154 14 18 chr1 59056104 59056324 -183608029 - AluJb SINE Alu -93 219 1 363 318 30 18 chr1 59056392 59056574 -183607779 + MIR SINE MIR 76 261 -1 2297 112 0 0 chr1 59056762 59057057 -183607296 - AluSx SINE Alu -17 295 1 670 279 30 41 chr1 59057057 59057326 -183607027 - L2 LINE L2 -6 3307 3042 408 256 156 37 chr1 59057489 59057817 -183606536 - L2 LINE L2 -581 2733 2367 326 276 26 58 chr1 59058560 59058716 -183605637 + MIR SINE MIR 36 186 -76 2306 114 3 3 chr1 59059181 59059489 -183604864 + AluSx SINE Alu 1 308 -4 183 80 0 0 chr1 59060035 59060060 -183604293 + (CCCA)n Simple_repeat Simple_repeat 2 26 0 489 350 63 13 chr1 59060176 59060413 -183603940 - MIR SINE MIR -1 261 13 376 315 37 6 chr1 59061177 59061339 -183603014 + MER117 DNA MER1_type 30 196 -1 229 289 36 12 chr1 59061553 59061636 -183602717 + L2 LINE L2 3188 3272 0 180 179 0 0 chr1 59061658 59061697 -183602656 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 339 300 25 68 chr1 59062001 59062281 -183602072 - L1ME4a LINE L1 -3 6118 5851 193 274 20 0 chr1 59062291 59062342 -183602011 - MIR SINE MIR -64 144 93 635 148 0 8 chr1 59062380 59062502 -183601851 + (TTCC)n Simple_repeat Simple_repeat 2 122 0 1453 181 29 0 chr1 59062578 59062816 -183601537 - AluJb SINE Alu -7 305 61 408 195 61 76 chr1 59063081 59063229 -183601124 + MLT1I LTR MaLR 252 547 -2 377 228 181 0 chr1 59063247 59063374 -183600979 + MIR SINE MIR 97 246 -16 396 282 104 6 chr1 59063406 59063569 -183600784 - MER112 DNA MER1_type -9 251 73 210 149 85 0 chr1 59063730 59063777 -183600576 - L2 LINE L2 -2 3311 3261 468 284 216 19 chr1 59064007 59064215 -183600138 + MIR SINE MIR 13 261 -1 500 264 36 0 chr1 59064303 59064443 -183599910 + MER117 DNA MER1_type 53 197 0 287 230 27 0 chr1 59064443 59064517 -183599836 - MIR3 SINE MIR -48 160 85 2309 120 0 0 chr1 59065439 59065747 -183598606 + AluSx SINE Alu 1 308 -4 515 265 44 0 chr1 59065851 59065987 -183598366 + MIR SINE MIR 3 144 -118 944 274 48 28 chr1 59066185 59066539 -183597814 - L1ME4a LINE L1 -2185 5623 5263 180 0 0 0 chr1 59066626 59066646 -183597707 + (T)n Simple_repeat Simple_repeat 1 20 0 2605 214 79 83 chr1 59066957 59067877 -183596476 - L1ME2 LINE L1 -1 6163 5241 189 74 0 0 chr1 59067877 59067904 -183596449 + (CA)n Simple_repeat Simple_repeat 1 27 0 2605 214 79 83 chr1 59067904 59067987 -183596366 - L1ME2 LINE L1 -923 5241 5159 1506 168 38 15 chr1 59067987 59068249 -183596104 - AluJo SINE Alu -9 303 36 2605 214 79 83 chr1 59068249 59068885 -183595468 - L1ME2 LINE L1 -1005 5159 4532 3409 209 64 52 chr1 59068896 59069158 -183595195 - L1ME2 LINE L1 -1686 4460 4203 1503 161 89 34 chr1 59069158 59069330 -183595023 - AluJb SINE Alu -4 308 112 348 24 0 0 chr1 59069330 59069371 -183594982 + (TG)n Simple_repeat Simple_repeat 2 42 0 1503 161 89 34 chr1 59069371 59069490 -183594863 - AluJb SINE Alu -200 112 1 3409 209 64 52 chr1 59069490 59070363 -183593990 - L1ME2 LINE L1 -1943 4203 3311 820 277 61 17 chr1 59070404 59070635 -183593718 + MLT1J1 LTR MaLR 37 277 -169 195 162 0 0 chr1 59070675 59070712 -183593641 + GA-rich Low_complexity Low_complexity 2 38 0 587 280 84 80 chr1 59070814 59071546 -183592807 - L1ME4a LINE L1 -1542 4604 3864 225 0 0 0 chr1 59071546 59071571 -183592782 + (TAATG)n Simple_repeat Simple_repeat 3 27 0 587 280 84 80 chr1 59071571 59071903 -183592450 - L1ME4a LINE L1 -2282 3864 3535 383 227 36 18 chr1 59071922 59072032 -183592321 - L1MC5 LINE L1 -774 7187 7076 717 196 98 75 chr1 59072164 59072430 -183591923 + L1MC5 LINE L1 7072 7343 -618 215 286 48 0 chr1 59072508 59072571 -183591782 - MIR3 SINE MIR -50 158 93 * 261 293 40 30 chr1 59072564 59072663 -183591690 + MIR SINE MIR 67 166 -96 208 275 22 88 chr1 59072744 59072835 -183591518 + MIR SINE MIR 61 145 -63 181 302 206 8 chr1 59073423 59073549 -183590804 + L2 LINE L2 3029 3179 -93 259 175 88 0 chr1 59073621 59073678 -183590675 + MIR SINE MIR 89 150 -112 8320 50 7 9 chr1 59073928 59074937 -183589416 - LTR13 LTR ERVK 0 1007 1 738 222 78 0 chr1 59075371 59075524 -183588829 + MER45A DNA AcHobo 4 168 -10 486 0 0 0 chr1 59076089 59076143 -183588210 + (CA)n Simple_repeat Simple_repeat 2 55 0 584 179 71 0 chr1 59076228 59076368 -183587985 - MER113 DNA MER1_type? -274 247 98 249 212 15 0 chr1 59076368 59076434 -183587919 + L1MC3 LINE L1 7718 7784 -1 702 226 137 17 chr1 59076711 59077003 -183587350 - LTR33 LTR ERVL -114 407 81 184 275 42 78 chr1 59077049 59077191 -183587162 + MIR3 SINE MIR 1 137 -71 258 274 59 29 chr1 59077525 59077627 -183586726 - MIR3 SINE MIR -46 162 58 310 289 70 9 chr1 59078055 59078169 -183586184 + MIR SINE MIR 47 167 -95 216 0 0 0 chr1 59078215 59078239 -183586114 + (TC)n Simple_repeat Simple_repeat 1 24 0 198 289 0 0 chr1 59078255 59078307 -183586046 + L2 LINE L2 2862 2913 -359 1183 244 14 41 chr1 59078464 59078828 -183585525 + MLT1H LTR MaLR 1 354 -195 479 239 9 9 chr1 59078830 59078943 -183585410 + MER81 DNA DNA 2 114 0 414 265 39 0 chr1 59079112 59079214 -183585139 + MER91C DNA MER1_type 1 106 -34 265 242 0 30 chr1 59079233 59079299 -183585054 + L2 LINE L2 3004 3067 -246 237 266 177 13 chr1 59079332 59079411 -183584942 + MIR SINE MIR 20 111 -151 21 0 0 0 chr1 59079686 59079707 -183584646 + AT_rich Low_complexity Low_complexity 1 21 0 250 309 0 32 chr1 59079707 59079801 -183584552 - L1ME1 LINE L1 -25 6141 6051 660 175 60 48 chr1 59079958 59080124 -183584229 - L1ME2 LINE L1 -66 6098 5931 259 323 65 0 chr1 59080287 59080380 -183583973 - MIR SINE MIR -25 237 139 724 173 0 77 chr1 59080411 59080567 -183583786 - MIR SINE MIR -105 157 14 374 298 125 0 chr1 59080605 59080773 -183583580 - L1ME2 LINE L1 -2010 5798 5610 231 329 131 13 chr1 59081318 59081435 -183582918 + MIR SINE MIR 40 166 -42 549 247 156 19 chr1 59081804 59081958 -183582395 + MIR SINE MIR 13 187 -75 237 243 14 0 chr1 59082594 59082664 -183581689 + L1ME LINE L1 5852 5922 -199 1182 272 73 11 chr1 59082682 59083149 -183581204 + L1ME LINE L1 40 535 -5861 5047 216 60 47 chr1 59083161 59084605 -183579748 + L1ME LINE L1 3789 5212 -1023 2228 137 0 6 chr1 59084605 59084919 -183579434 + AluSx SINE Alu 1 312 0 5047 216 60 47 chr1 59084919 59084959 -183579394 + L1ME LINE L1 5212 5250 -985 674 124 0 58 chr1 59084959 59085096 -183579257 + L1MB7 LINE L1 6045 6173 -11 5047 216 60 47 chr1 59085096 59085338 -183579015 + L1ME LINE L1 5250 5535 -700 1079 209 24 5 chr1 59085680 59085890 -183578463 - MLT1A1 LTR MaLR 0 365 152 821 141 31 0 chr1 59085895 59086023 -183578330 - AluSq/x SINE Alu -180 132 1 661 167 129 0 chr1 59086030 59086162 -183578191 - MLT1A1 LTR MaLR -216 149 1 183 42 0 0 chr1 59086842 59086866 -183577487 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 293 260 135 0 chr1 59086928 59087024 -183577329 - L2 LINE L2 -1 3271 3163 2122 140 0 19 chr1 59087293 59087607 -183576746 - AluJb SINE Alu -4 308 1 1020 310 103 27 chr1 59087997 59088474 -183575879 - MLT1K LTR MaLR -10 578 66 2054 49 0 4 chr1 59089053 59089297 -183575056 + AluY SINE Alu 67 309 -2 270 0 0 0 chr1 59090289 59090319 -183574034 + (TG)n Simple_repeat Simple_repeat 2 31 0 972 197 90 10 chr1 59090886 59091177 -183573176 - MER33 DNA MER1_type -22 302 1 195 255 104 76 chr1 59091785 59092036 -183572317 + L2 LINE L2 2910 3167 -105 1014 252 102 11 chr1 59092400 59092781 -183571572 - L1ME1 LINE L1 -7 6159 5744 386 250 104 0 chr1 59093365 59093461 -183570892 + MIR SINE MIR 43 148 -60 607 194 17 142 chr1 59093723 59093838 -183570515 + MIR SINE MIR 44 117 -145 2299 95 3 3 chr1 59093838 59094132 -183570221 + AluSx SINE Alu 1 294 -18 607 194 17 142 chr1 59094132 59094248 -183570105 + MIR SINE MIR 117 246 -16 205 251 126 60 chr1 59095051 59095234 -183569119 - MIR SINE MIR -40 222 28 3523 180 96 54 chr1 59095384 59096336 -183568017 + LTR13 LTR ERVK 16 1007 0 544 261 90 48 chr1 59096341 59096651 -183567702 - L1ME1 LINE L1 -30 6136 5814 325 286 43 21 chr1 59096626 59096766 -183567587 - L1ME1 LINE L1 -2287 3859 3717 * 405 273 35 23 chr1 59097179 59097351 -183567002 + GA-rich Low_complexity Low_complexity 3 176 0 1382 237 40 51 chr1 59097488 59097957 -183566396 + MLT1C LTR MaLR 4 467 0 2366 142 13 13 chr1 59097985 59098372 -183565981 + MLT1B LTR MaLR 1 387 -3 1102 223 247 46 chr1 59098743 59099371 -183564982 + MER52A LTR ERV1 437 777 -243 232 318 45 85 chr1 59099404 59099627 -183564726 + MER52A LTR ERV1 1259 1472 -283 414 231 8 67 chr1 59099628 59099762 -183564591 + MER52A LTR ERV1 1601 1726 -29 441 279 60 27 chr1 59099915 59100095 -183564258 - MIR3 SINE MIR -15 193 8 1464 187 27 62 chr1 59100690 59101064 -183563289 - MLT1A2 LTR MaLR -13 361 1 985 129 0 22 chr1 59102116 59102366 -183561987 - AluJb SINE Alu -21 291 2 774 293 49 4 chr1 59102557 59102782 -183561571 - MIR SINE MIR -8 254 20 441 321 134 35 chr1 59102933 59103307 -183561046 - L2 LINE L2 -51 3221 2811 1969 186 67 10 chr1 59103739 59104142 -183560211 + MSTB LTR MaLR 1 426 0 207 257 243 14 chr1 59105939 59106013 -183558340 - MIR SINE MIR -149 113 23 217 261 0 0 chr1 59107654 59107700 -183556653 - L2 LINE L2 0 3313 3268 588 200 200 6 chr1 59108251 59108421 -183555932 + MIR SINE MIR 52 254 -8 216 384 49 30 chr1 59110347 59110511 -183553842 + L2 LINE L2 3106 3272 0 208 282 97 32 chr1 59111192 59111316 -183553037 - L2 LINE L2 -652 2662 2531 206 323 84 68 chr1 59111475 59111726 -183552627 + L2 LINE L2 3018 3272 0 400 305 105 20 chr1 59113037 59113237 -183551116 - MIR SINE MIR 0 262 46 422 213 139 0 chr1 59114153 59114261 -183550092 + MIR SINE MIR 31 153 -109 229 197 53 66 chr1 59114265 59114341 -183550012 + MLT1L LTR MaLR 4 78 -537 800 247 89 74 chr1 59114347 59114463 -183549890 + MLT1L LTR MaLR 195 308 -307 2086 130 3 37 chr1 59114463 59114786 -183549567 + AluSx SINE Alu 1 312 0 800 247 89 74 chr1 59114786 59115062 -183549291 + MLT1L LTR MaLR 308 593 -22 207 0 0 0 chr1 59115062 59115085 -183549268 + (CA)n Simple_repeat Simple_repeat 1 23 0 257 268 62 21 chr1 59115095 59115192 -183549161 + MIR SINE MIR 149 249 -13 2367 122 41 75 chr1 59116599 59117082 -183547271 - L1MB7 LINE L1 -8 6176 5710 695 232 18 6 chr1 59117096 59117264 -183547089 - L1MB5 LINE L1 0 6174 6005 1996 186 73 3 chr1 59117264 59117634 -183546719 + MSTD LTR MaLR 1 396 0 928 178 28 0 chr1 59117635 59117815 -183546538 + MSTD-int LTR MaLR 1 185 -1550 10905 119 27 76 chr1 59117815 59118989 -183545364 + LTR49-int LTR ERV1 3481 4711 -1620 2122 120 0 0 chr1 59118989 59119290 -183545063 + AluSx SINE Alu 1 301 -11 10905 119 27 76 chr1 59119290 59120116 -183544237 + LTR49-int LTR ERV1 4711 5484 -847 1991 105 4 4 chr1 59120116 59120393 -183543960 - AluSc SINE Alu -32 277 1 10905 119 27 76 chr1 59120393 59120503 -183543850 + LTR49-int LTR ERV1 5484 5598 -733 1373 174 102 60 chr1 59120505 59120935 -183543418 + LTR7 LTR ERV1 1 448 -2 5028 81 18 0 chr1 59120937 59121608 -183542745 + HERVH LTR ERV1 1 683 -7030 8755 90 5 13 chr1 59121727 59122966 -183541387 + HERVH LTR ERV1 1759 2987 -4726 869 147 18 47 chr1 59122938 59123108 -183541245 + HERVH LTR ERV1 3126 3290 -4423 * 3387 112 6 6 chr1 59123098 59123600 -183540753 + HERVH LTR ERV1 3492 3993 -3720 4376 147 1 1 chr1 59123602 59124264 -183540089 + HERVH LTR ERV1 4488 5149 -2564 2556 101 41 42 chr1 59124265 59124867 -183539486 + HERVH LTR ERV1 5600 7713 0 1372 174 105 63 chr1 59124867 59125297 -183539056 + LTR7 LTR ERV1 1 448 -2 4450 108 54 10 chr1 59125298 59126004 -183538349 + LTR49-int LTR ERV1 5595 6331 0 3292 105 114 2 chr1 59126004 59126315 -183538038 + LTR49 LTR ERV1 1 276 -319 408 40 0 0 chr1 59126315 59126365 -183537988 + (TG)n Simple_repeat Simple_repeat 1 50 0 3292 105 114 2 chr1 59126365 59126588 -183537765 + LTR49 LTR ERV1 276 595 0 268 337 35 0 chr1 59126588 59126674 -183537679 + L2 LINE L2 3134 3222 -50 252 0 0 0 chr1 59127385 59127413 -183536940 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 59127484 59127505 -183536848 + AT_rich Low_complexity Low_complexity 1 21 0 933 175 0 65 chr1 59127661 59127861 -183536492 - AluJb SINE Alu -125 187 1 278 329 26 0 chr1 59127967 59128043 -183536310 + MIR SINE MIR 49 126 -136 273 87 22 43 chr1 59128191 59128237 -183536116 + LTR7 LTR ERV1 406 450 0 8266 147 40 28 chr1 59128249 59130055 -183534298 + HERVH LTR ERV1 12 2150 -5563 2006 115 87 8 chr1 59130060 59130429 -183533924 + LTR7 LTR ERV1 6 450 0 1115 109 63 0 chr1 59130554 59130729 -183533624 - MER34B LTR ERV1 -29 536 351 769 118 0 63 chr1 59130732 59130859 -183533494 + AluJb SINE Alu 4 122 -190 969 139 22 44 chr1 59130914 59131094 -183533259 + AluJb SINE Alu 135 310 -2 2141 134 47 3 chr1 59131094 59131437 -183532916 - MER34B LTR ERV1 -207 358 1 538 184 18 61 chr1 59131680 59131794 -183532559 - AluJ SINE Alu -39 273 165 532 162 71 0 chr1 59131797 59131896 -183532457 - AluJ SINE Alu -205 107 2 221 279 27 27 chr1 59134830 59134941 -183529412 + (CCCCG)n Simple_repeat Simple_repeat 4 114 0 238 242 76 0 chr1 59135618 59135684 -183528669 - L2 LINE L2 -19 3294 3224 616 119 0 0 chr1 59135755 59135839 -183528514 - AluSx SINE Alu -20 292 209 1000 77 0 8 chr1 59135839 59135969 -183528384 - AluSx SINE Alu -183 129 1 414 254 21 42 chr1 59136001 59136143 -183528210 - L2 LINE L2 -188 3084 2946 206 370 22 11 chr1 59136191 59136283 -183528070 - L2 LINE L2 -457 2857 2765 464 244 85 57 chr1 59136299 59136475 -183527878 + MER5A DNA MER1_type 7 187 -2 1599 243 73 35 chr1 59136700 59137259 -183527094 - MER34B LTR ERV1 -3 562 1 290 181 0 48 chr1 59137259 59137342 -183527011 + L1ME2 LINE L1 6080 6158 -6 2526 117 42 44 chr1 59137635 59138022 -183526331 + MSTA LTR MaLR 1 388 -40 2248 101 0 16 chr1 59138022 59138340 -183526013 - AluSq SINE Alu 0 313 1 2526 117 42 44 chr1 59138340 59138381 -183525972 + MSTA LTR MaLR 388 428 0 722 109 182 40 chr1 59138401 59138621 -183525732 + MER106B DNA MER1_type 1 236 0 285 242 63 32 chr1 59138633 59138728 -183525625 - MER103 DNA DNA -48 118 21 2307 97 0 0 chr1 59138757 59139067 -183525286 - AluSx SINE Alu -2 310 1 2013 125 3 3 chr1 59139091 59139396 -183524957 - AluSx SINE Alu -7 305 1 6982 107 16 21 chr1 59139699 59140711 -183523642 + LTR13 LTR ERVK 1 1007 0 1548 176 3 14 chr1 59140737 59141027 -183523326 - AluJb SINE Alu -25 287 1 1998 181 79 7 chr1 59141126 59141529 -183522824 - MSTB1 LTR MaLR 0 432 1 324 109 0 0 chr1 59141809 59141855 -183522498 - L2 LINE L2 0 3313 3268 201 179 51 0 chr1 59141829 59141868 -183522485 - MIR SINE MIR -14 248 208 * 192 300 246 0 chr1 59141954 59142064 -183522289 - MIR SINE MIR 0 262 126 2541 123 29 0 chr1 59142731 59143112 -183521241 + MER57A LTR ERV1 8 399 -4 3690 205 46 14 chr1 59143282 59144043 -183520310 - MER21B LTR ERV1 -60 803 19 507 165 11 22 chr1 59144065 59144156 -183520197 - MER21B LTR ERV1 -773 90 1 305 303 40 106 chr1 59144169 59144443 -183519910 + MIR SINE MIR 1 256 -6 2965 63 95 2 chr1 59144666 59145076 -183519277 + LTR7 LTR ERV1 1 448 -2 308 307 0 35 chr1 59145204 59145318 -183519035 - MER81 DNA DNA -4 110 1 269 317 117 23 chr1 59145357 59145591 -183518762 + MIR SINE MIR 3 256 -6 1828 5 0 0 chr1 59145810 59146013 -183518340 + L1PA2 LINE L1 5953 6155 0 1207 160 42 29 chr1 59147171 59147483 -183516870 - MER33 DNA MER1_type -4 320 5 218 228 25 76 chr1 59147625 59147704 -183516649 - MIR SINE MIR -13 249 175 471 261 122 27 chr1 59147756 59147944 -183516409 + MIR SINE MIR 2 207 -55 300 287 32 11 chr1 59148035 59148129 -183516224 - MIR SINE MIR -137 125 30 194 180 180 16 chr1 59148370 59148431 -183515922 + L2 LINE L2 3220 3290 -23 978 194 6 0 chr1 59148638 59148803 -183515550 + FRAM SINE Alu 1 166 0 448 357 100 21 chr1 59149494 59149735 -183514618 + L2 LINE L2 2997 3256 -16 209 256 0 0 chr1 59149702 59149741 -183514612 + MIR SINE MIR 220 258 -4 * 971 219 32 16 chr1 59149913 59150164 -183514189 + MIR SINE MIR 8 262 0 207 286 0 0 chr1 59150359 59150408 -183513945 - L2 LINE L2 0 3313 3265 1242 198 63 4 chr1 59151171 59151462 -183512891 + AluJb SINE Alu 2 308 0 1297 157 124 8 chr1 59152182 59152449 -183511904 - AluJb SINE Alu -14 298 1 2071 109 0 14 chr1 59152470 59152764 -183511589 - AluSx SINE Alu -22 290 1 199 155 0 35 chr1 59153253 59153311 -183511042 + G-rich Low_complexity Low_complexity 4 59 0 399 21 0 0 chr1 59153314 59153362 -183510991 + (GA)n Simple_repeat Simple_repeat 1 48 0 2329 80 0 3 chr1 59153405 59153718 -183510635 + AluSx SINE Alu 1 312 0 25 0 0 0 chr1 59153840 59153865 -183510488 + AT_rich Low_complexity Low_complexity 1 25 0 585 164 107 25 chr1 59153885 59154007 -183510346 - FLAM_A SINE Alu -1 132 1 189 121 0 0 chr1 59154948 59154981 -183509372 + (CCCCCG)n Simple_repeat Simple_repeat 5 37 0 188 171 105 114 chr1 59157258 59157363 -183506990 - L2 LINE L2 -165 3107 3004 329 268 72 22 chr1 59157847 59157985 -183506368 - MIR SINE MIR -89 173 29 200 247 0 62 chr1 59157958 59158039 -183506314 - MIR3 SINE MIR -118 90 15 * 606 300 35 31 chr1 59158593 59158820 -183505533 + MIR SINE MIR 23 250 -12 354 258 144 8 chr1 59158839 59158971 -183505382 + MER103 DNA DNA 8 157 -9 340 286 27 60 chr1 59159426 59159603 -183504750 + MIR SINE MIR 4 173 -75 201 74 0 0 chr1 59159929 59159956 -183504397 + (CCG)n Simple_repeat Simple_repeat 2 28 0 223 205 114 65 chr1 59160296 59160411 -183503942 - MIR SINE MIR -69 139 6 197 307 67 13 chr1 59160572 59160647 -183503706 + MIR SINE MIR 20 98 -110 239 194 0 48 chr1 59160857 59160919 -183503434 - MIR SINE MIR -87 175 117 675 241 29 23 chr1 59160979 59161153 -183503200 + MIR SINE MIR 14 188 -74 337 320 10 0 chr1 59161244 59161344 -183503009 - MIR SINE MIR -63 145 45 2152 114 0 9 chr1 59161459 59161774 -183502579 + AluSx SINE Alu 1 312 0 2355 60 0 60 chr1 59163992 59164323 -183500030 - AluY SINE Alu 0 311 1 190 271 56 47 chr1 59164937 59165044 -183499309 + L2 LINE L2 2658 2765 -549 2216 113 0 0 chr1 59165045 59165347 -183499006 + AluSx SINE Alu 1 302 -10 259 385 76 28 chr1 59165804 59166201 -183498152 + L2 LINE L2 2857 3272 0 482 288 141 0 chr1 59166322 59166492 -183497861 - MIR SINE MIR -6 256 63 1947 147 7 0 chr1 59166942 59167228 -183497125 - AluJb SINE Alu -24 288 1 471 333 68 32 chr1 59167671 59167920 -183496433 - MIR SINE MIR -3 259 2 2258 100 0 3 chr1 59168167 59168466 -183495887 + AluSg SINE Alu 1 298 -12 25 0 0 0 chr1 59168628 59168653 -183495700 + AT_rich Low_complexity Low_complexity 1 25 0 1048 166 31 5 chr1 59168796 59168989 -183495364 - L1MD2 LINE L1 -1 6358 6161 782 193 86 5 chr1 59168997 59169184 -183495169 - L1M4 LINE L1 -1152 4994 4793 2213 193 51 14 chr1 59169255 59169743 -183494610 - Charlie4a DNA MER1_type 0 508 3 380 204 97 0 chr1 59169769 59169872 -183494481 - L1MC4a LINE L1 -1982 5826 5714 215 338 15 0 chr1 59170775 59170843 -183493510 - L2 LINE L2 0 3313 3245 365 323 227 0 chr1 59171295 59171660 -183492693 + L2 LINE L2 1884 2331 -983 666 310 63 29 chr1 59171750 59172160 -183492193 - LTR33 LTR ERVL -83 438 15 607 365 52 14 chr1 59172400 59172841 -183491512 - HERVL LTR ERVL -387 5377 4920 479 310 70 19 chr1 59172869 59173255 -183491098 - LTR16A1 LTR ERVL -3 454 74 566 191 9 9 chr1 59173405 59173520 -183490833 + L1MB7 LINE L1 6070 6184 0 1370 298 75 17 chr1 59173543 59174044 -183490309 - HERVL LTR ERVL -1003 4761 4168 996 213 69 113 chr1 59174044 59174219 -183490134 + MLT1A2 LTR MaLR 2 183 -191 1769 154 6 44 chr1 59174219 59174537 -183489816 + AluJb SINE Alu 1 306 -6 996 213 69 113 chr1 59174537 59174751 -183489602 + MLT1A2 LTR MaLR 183 374 0 1370 298 75 17 chr1 59174751 59174935 -183489418 - HERVL LTR ERVL -1596 4168 3996 701 71 0 143 chr1 59174958 59175084 -183489269 - AluJo SINE Alu -177 135 28 894 291 121 18 chr1 59175084 59175524 -183488829 - HERVL LTR ERVL -1766 3998 3514 1477 173 64 48 chr1 59175651 59176009 -183488344 - MLT1E3 LTR MaLR 0 624 261 363 207 138 9 chr1 59176028 59176144 -183488209 - MLT1E3 LTR MaLR -519 135 5 239 300 132 11 chr1 59176179 59176369 -183487984 - LTR33 LTR ERVL -17 504 292 617 225 46 37 chr1 59176398 59176616 -183487737 - LTR33 LTR ERVL -298 223 4 628 338 50 7 chr1 59176673 59177069 -183487284 - HERVL LTR ERVL -2400 3254 2911 278 235 12 12 chr1 59177110 59177191 -183487162 - LTR33 LTR ERVL -392 129 49 307 262 163 20 chr1 59177847 59178049 -183486304 + L2 LINE L2 2826 3056 -257 301 223 204 10 chr1 59178678 59178781 -183485572 - MIR3 SINE MIR -53 155 33 391 313 25 20 chr1 59178878 59179039 -183485314 + MIR SINE MIR 14 144 -64 262 362 57 0 chr1 59179797 59179938 -183484415 - L2 LINE L2 -301 2971 2823 319 343 86 0 chr1 59179938 59180078 -183484275 - L2 LINE L2 -207 3065 2914 196 272 26 70 chr1 59181555 59181669 -183482684 - MER5A DNA MER1_type -79 110 2 182 291 149 14 chr1 59181905 59182046 -183482307 - L2 LINE L2 -329 2984 2825 1436 290 97 56 chr1 59182910 59183117 -183481236 - HAL1 LINE L1 -1 2506 2309 1494 72 5 0 chr1 59183117 59183310 -183481043 + AluY SINE Alu 106 299 -12 1436 290 97 56 chr1 59183310 59183862 -183480491 - HAL1 LINE L1 -198 2309 1781 1806 130 30 23 chr1 59183862 59184163 -183480190 + AluJb SINE Alu 1 303 -9 1436 290 97 56 chr1 59184163 59184590 -183479763 - HAL1 LINE L1 -726 1781 1373 2184 113 0 0 chr1 59184590 59184882 -183479471 - AluSg SINE Alu -18 292 1 1436 290 97 56 chr1 59184882 59185231 -183479122 - HAL1 LINE L1 -1134 1373 723 278 281 88 25 chr1 59185405 59185565 -183478788 - HAL1 LINE L1 -2080 427 258 355 269 120 4 chr1 59185826 59185989 -183478364 - MIR SINE MIR -1 261 78 1808 167 17 7 chr1 59186586 59186886 -183477467 + AluJb SINE Alu 1 303 -9 2061 96 57 0 chr1 59186890 59187171 -183477182 + AluSq SINE Alu 1 297 -16 2140 136 0 0 chr1 59187219 59187529 -183476824 + AluSx SINE Alu 1 310 -2 1972 144 0 6 chr1 59187539 59187852 -183476501 + AluSx SINE Alu 1 311 -1 5252 198 59 22 chr1 59187852 59188931 -183475422 - L1MB7 LINE L1 -9 6175 5137 1572 140 0 0 chr1 59188931 59189159 -183475194 - AluJb SINE Alu 0 312 85 5252 198 59 22 chr1 59189159 59189739 -183474614 - L1MB7 LINE L1 -1047 5137 4580 2096 125 0 0 chr1 59189739 59190027 -183474326 + AluSx SINE Alu 1 288 -24 5252 198 59 22 chr1 59190027 59190237 -183474116 - L1MB7 LINE L1 -1604 4580 4379 393 39 0 0 chr1 59190237 59190288 -183474065 + (TG)n Simple_repeat Simple_repeat 2 52 0 5252 198 59 22 chr1 59190288 59190605 -183473748 - L1MB7 LINE L1 -1805 4379 3934 324 246 42 17 chr1 59190682 59190800 -183473553 - L1ME4a LINE L1 -38 6083 5963 269 289 36 0 chr1 59191235 59191318 -183473035 + MIR3 SINE MIR 93 178 -30 235 286 54 36 chr1 59191578 59191690 -183472663 + MIR3 SINE MIR 2 115 -93 195 42 0 0 chr1 59191907 59191931 -183472422 + (TC)n Simple_repeat Simple_repeat 1 24 0 369 290 20 0 chr1 59192607 59192679 -183471674 - MIR SINE MIR -116 146 70 1938 136 19 16 chr1 59192679 59192988 -183471365 - AluJb SINE Alu -2 310 1 369 290 20 0 chr1 59192988 59193015 -183471338 - MIR SINE MIR -192 70 45 227 316 32 21 chr1 59193096 59193191 -183471162 + MIR SINE MIR 48 143 -65 342 280 190 20 chr1 59193270 59193470 -183470883 - MIR SINE MIR -19 243 10 1962 126 13 13 chr1 59193480 59193790 -183470563 - AluSx SINE Alu -2 310 1 286 261 182 17 chr1 59194272 59194434 -183469919 - MIR3 SINE MIR -57 151 12 306 224 231 15 chr1 59194540 59194674 -183469679 + MIR SINE MIR 77 239 -23 244 352 92 0 chr1 59194676 59194818 -183469535 - MER5B DNA MER1_type -5 173 19 197 250 67 0 chr1 59194847 59194907 -183469446 - MIR SINE MIR -63 145 82 255 286 0 14 chr1 59195404 59195474 -183468879 - L2 LINE L2 -4 3268 3200 267 219 162 29 chr1 59196265 59196370 -183467983 + MIR SINE MIR 27 146 -62 294 336 9 0 chr1 59196697 59196807 -183467546 - L2 LINE L2 -18 3295 3185 393 248 26 39 chr1 59197317 59197564 -183466789 + GA-rich Low_complexity Low_complexity 1 243 0 210 205 0 0 chr1 59197670 59197748 -183466605 + (TG)n Simple_repeat Simple_repeat 2 79 0 204 254 199 55 chr1 59198425 59198621 -183465732 + MIR3 SINE MIR 5 253 -9 308 307 186 0 chr1 59199310 59199450 -183464903 - MIR SINE MIR -11 251 86 599 265 55 30 chr1 59200299 59200499 -183463854 + MIR SINE MIR 10 214 -48 308 327 124 39 chr1 59200991 59201425 -183462928 - L2 LINE L2 -424 2890 2420 264 354 117 16 chr1 59201831 59202088 -183462265 + L2 LINE L2 2818 3100 -172 251 312 100 41 chr1 59203050 59203220 -183461133 + MIR SINE MIR 82 261 -1 221 387 87 7 chr1 59203849 59203999 -183460354 - L2 LINE L2 -213 3059 2898 188 325 121 32 chr1 59204735 59204892 -183459461 + L2 LINE L2 2564 2734 -580 389 297 101 0 chr1 59205931 59206069 -183458284 + MIR SINE MIR 28 179 -83 242 335 103 28 chr1 59206564 59206746 -183457607 - MIR SINE MIR -61 201 9 498 184 51 63 chr1 59207398 59207556 -183456797 - MER20 DNA MER1_type -63 156 1 280 354 37 24 chr1 59207919 59208083 -183456270 - MIR SINE MIR -51 211 46 193 293 50 40 chr1 59208231 59208330 -183456023 - MIR3 SINE MIR -20 188 89 260 329 13 0 chr1 59208356 59208435 -183455918 - MIR3 SINE MIR -20 188 109 427 271 119 7 chr1 59208544 59208695 -183455658 - MIR SINE MIR -74 188 21 202 152 25 76 chr1 59209000 59209079 -183455274 + CT-rich Low_complexity Low_complexity 4 78 0 211 287 199 0 chr1 59209894 59210030 -183454323 + MIR SINE MIR 80 242 -20 359 83 62 10 chr1 59210433 59210529 -183453824 + (TG)n Simple_repeat Simple_repeat 1 101 0 376 340 93 0 chr1 59211872 59212034 -183452319 - MIR3 SINE MIR -20 188 12 240 111 0 0 chr1 59212402 59212438 -183451915 + (TCCG)n Simple_repeat Simple_repeat 2 37 0 221 333 136 25 chr1 59212584 59212746 -183451607 - L2 LINE L2 -40 3273 3094 366 313 28 21 chr1 59212885 59213029 -183451324 + MIR SINE MIR 111 255 -7 337 295 21 0 chr1 59213535 59213630 -183450723 - L2 LINE L2 0 3313 3217 208 305 0 0 chr1 59213902 59213961 -183450392 - MIR SINE MIR -37 225 167 706 107 215 0 chr1 59213966 59214087 -183450266 + FRAM SINE Alu 1 40 0 489 258 30 36 chr1 59214099 59214133 -183450220 - MIR SINE MIR -84 178 145 1577 181 3 20 chr1 59214133 59214425 -183449928 - AluJo SINE Alu -14 298 12 489 258 30 36 chr1 59214425 59214557 -183449796 - MIR SINE MIR -117 145 13 196 313 24 0 chr1 59215072 59215155 -183449198 + MIR SINE MIR 61 145 -63 331 320 33 29 chr1 59215505 59215681 -183448672 - MIR SINE MIR -69 139 11 280 220 23 114 chr1 59215822 59215954 -183448399 + LTR16B LTR ERVL 107 226 -238 348 150 17 0 chr1 59216062 59216122 -183448231 + LTR16B LTR ERVL 402 462 -2 251 200 18 0 chr1 59216147 59216202 -183448151 - MIR SINE MIR -118 144 89 413 284 147 27 chr1 59216764 59217056 -183447297 + L2 LINE L2 2892 3218 -54 218 271 17 0 chr1 59217212 59217271 -183447082 - MIR SINE MIR -63 145 86 214 339 89 18 chr1 59217870 59217982 -183446371 - L3 LINE CR1 -3 1574 1455 249 320 41 16 chr1 59218068 59218190 -183446163 - MIR3 SINE MIR -41 167 43 221 309 171 0 chr1 59218234 59218357 -183445996 - MIR SINE MIR -3 259 116 311 287 69 10 chr1 59218615 59218784 -183445569 - MIR SINE MIR -4 258 15 190 146 24 0 chr1 59218824 59218865 -183445488 - L2 LINE L2 -22 3250 3209 374 259 135 12 chr1 59219933 59220103 -183444250 + MIR SINE MIR 69 259 -3 1979 106 35 0 chr1 59220231 59220515 -183443838 - AluSx SINE Alu -1 311 18 240 35 0 0 chr1 59221217 59221246 -183443107 + (T)n Simple_repeat Simple_repeat 1 29 0 229 313 16 0 chr1 59221561 59221625 -183442728 - MER91A DNA MER1_type -130 66 2 563 338 54 36 chr1 59221626 59221942 -183442411 - L3 LINE CR1 -34 1543 1149 444 37 0 0 chr1 59221942 59221996 -183442357 + (CA)n Simple_repeat Simple_repeat 2 55 0 563 338 54 36 chr1 59221996 59222161 -183442192 - L3 LINE CR1 -428 1149 988 208 270 244 60 chr1 59223298 59223617 -183440736 - L2 LINE L2 0 3272 2895 200 229 21 0 chr1 59226197 59226245 -183438108 + L3 LINE CR1 1429 1477 -100 247 236 79 56 chr1 59226441 59226530 -183437823 + MIR SINE MIR 80 170 -92 233 370 46 19 chr1 59226695 59226803 -183437550 - MIR SINE MIR -133 129 19 230 171 0 0 chr1 59228056 59228097 -183436256 - MIR SINE MIR -115 147 107 387 200 88 0 chr1 59228243 59228323 -183436030 - L2 LINE L2 -18 3295 3209 573 260 141 18 chr1 59229625 59229852 -183434501 + MIR SINE MIR 1 255 -7 212 299 218 0 chr1 59231752 59231839 -183432514 - MIR SINE MIR -60 148 43 493 256 19 70 chr1 59232325 59232365 -183431988 - MIR SINE MIR -113 149 108 2358 75 0 3 chr1 59232365 59232672 -183431681 + AluSx SINE Alu 2 307 -5 493 256 19 70 chr1 59232672 59232787 -183431566 - MIR SINE MIR -154 108 2 231 224 0 30 chr1 59233160 59233227 -183431126 + GA-rich Low_complexity Low_complexity 2 66 0 185 264 57 0 chr1 59233993 59234046 -183430307 - MIR SINE MIR -80 182 127 216 162 0 0 chr1 59234136 59234173 -183430180 + MIR SINE MIR 210 246 -16 2292 85 16 0 chr1 59234197 59234502 -183429851 + AluSx SINE Alu 1 310 -2 648 242 45 50 chr1 59235425 59235623 -183428730 + MIR SINE MIR 66 262 0 4359 176 22 4 chr1 59235648 59236585 -183427768 + L1MB8 LINE L1 5227 6178 0 182 237 0 0 chr1 59237146 59237184 -183427169 - MIR3 SINE MIR -14 194 157 327 311 39 0 chr1 59237348 59237451 -183426902 - L1ME4a LINE L1 -12 6109 6003 584 291 57 17 chr1 59238036 59238211 -183426142 + MIR3 SINE MIR 21 202 -6 551 263 45 94 chr1 59238286 59238617 -183425736 - L2 LINE L2 -7 3265 2951 456 309 48 6 chr1 59238748 59238913 -183425440 - MIR SINE MIR -60 202 31 181 297 174 7 chr1 59239330 59239468 -183424885 - MIR SINE MIR -70 192 32 418 284 100 17 chr1 59239634 59239873 -183424480 - L1ME4a LINE L1 -17 6104 5846 260 226 16 0 chr1 59239883 59239945 -183424408 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 183 267 133 38 chr1 59240587 59240692 -183423661 - L2 LINE L2 -303 2969 2855 190 365 74 14 chr1 59241866 59242014 -183422339 + MIR SINE MIR 51 207 -55 284 200 33 0 chr1 59242867 59242927 -183421426 - L2 LINE L2 -1 3271 3210 188 360 34 0 chr1 59243490 59243579 -183420774 + MIR SINE MIR 89 180 -82 194 245 19 19 chr1 59243784 59243837 -183420516 - L2 LINE L2 -5 3267 3215 186 355 37 56 chr1 59244090 59244197 -183420156 - L3 LINE CR1 -77 1500 1396 238 351 18 18 chr1 59244637 59244748 -183419605 - MIR3 SINE MIR -85 123 13 235 282 191 0 chr1 59245279 59245410 -183418943 - L2 LINE L2 -212 3060 2905 244 308 77 46 chr1 59246511 59246641 -183417712 - MIR SINE MIR -65 197 64 254 400 45 0 chr1 59246834 59246944 -183417409 - L3 LINE CR1 -13 1564 1450 208 153 0 51 chr1 59246992 59247051 -183417302 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 894 326 72 42 chr1 59247052 59247574 -183416779 - L2 LINE L2 -7 3306 2779 304 335 58 35 chr1 59247809 59247982 -183416371 - MIR SINE MIR -56 206 30 257 329 13 0 chr1 59248107 59248186 -183416167 - MIR SINE MIR -82 126 47 1044 98 22 71 chr1 59248879 59248909 -183415444 + L1MA2 LINE L1 6130 6160 -144 2079 96 0 0 chr1 59248909 59249191 -183415162 + AluY SINE Alu 30 311 0 1044 98 22 71 chr1 59249191 59249344 -183415009 + L1MA2 LINE L1 6160 6304 0 483 261 11 33 chr1 59249389 59249573 -183414780 + (TG)n Simple_repeat Simple_repeat 1 180 0 220 208 13 13 chr1 59249614 59249691 -183414662 + (TG)n Simple_repeat Simple_repeat 1 77 0 287 226 11 28 chr1 59249762 59249943 -183414410 + (TG)n Simple_repeat Simple_repeat 1 178 0 519 274 3 33 chr1 59249957 59250330 -183414023 + (TG)n Simple_repeat Simple_repeat 1 361 0 273 309 0 36 chr1 59250345 59250484 -183413869 + (TG)n Simple_repeat Simple_repeat 1 134 0 186 271 0 23 chr1 59250498 59250631 -183413722 + (TG)n Simple_repeat Simple_repeat 2 131 0 606 284 57 16 chr1 59250863 59251057 -183413296 - MIR SINE MIR -30 232 31 204 237 51 17 chr1 59251903 59251962 -183412391 + MIR SINE MIR 33 93 -115 294 230 65 79 chr1 59252230 59252369 -183411984 + L2 LINE L2 3136 3272 0 372 306 0 6 chr1 59253396 59253556 -183410797 + (CA)n Simple_repeat Simple_repeat 2 160 0 445 269 115 0 chr1 59253564 59253694 -183410659 + L2 LINE L2 2933 3077 -195 181 425 21 0 chr1 59254071 59254165 -183410188 - L3 LINE CR1 -176 1401 1306 202 306 97 0 chr1 59254278 59254350 -183410003 - L2 LINE L2 -9 3304 3226 440 225 48 159 chr1 59254656 59254883 -183409470 - MIR SINE MIR -17 245 44 233 341 181 7 chr1 59255513 59255651 -183408702 - MIR SINE MIR -72 190 29 234 298 71 24 chr1 59255813 59255897 -183408456 + L3 LINE CR1 1423 1510 -67 283 330 92 0 chr1 59256357 59256466 -183407887 + MIR SINE MIR 103 221 -41 251 294 43 22 chr1 59256508 59256600 -183407753 - MIR SINE MIR -51 211 118 656 278 74 117 chr1 59256773 59257191 -183407162 + L1MEd LINE L1 638 1037 -5082 1901 147 26 10 chr1 59457477 59457784 -183206569 + AluSx SINE Alu 1 312 0 186 133 0 0 chr1 59457784 59457814 -183206539 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 1044 53 29 18 chr1 59457814 59457984 -183206369 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 2093 142 3 0 chr1 59457985 59458288 -183206065 + AluSq SINE Alu 1 304 -9 661 178 123 0 chr1 59458749 59458895 -183205458 - MIR SINE MIR -20 242 79 300 273 169 16 chr1 59459322 59459505 -183204848 + MIR SINE MIR 46 256 -6 220 157 0 114 chr1 59459543 59459613 -183204740 - MIR SINE MIR -129 79 18 275 250 152 22 chr1 59459787 59459879 -183204474 + L2 LINE L2 2955 3058 -214 2202 147 14 39 chr1 59460018 59460104 -183204249 + L1MB3 LINE L1 5746 5833 -350 2236 116 0 25 chr1 59460104 59460424 -183203929 + AluSx SINE Alu 1 312 0 2202 147 14 39 chr1 59460424 59460779 -183203574 + L1MB3 LINE L1 5833 6176 -7 848 241 36 18 chr1 59460788 59461035 -183203318 + MIR SINE MIR 13 262 0 265 53 0 0 chr1 59461115 59461153 -183203200 + L2 LINE L2 3014 3051 -221 542 290 0 0 chr1 59461846 59461977 -183202376 - MIR3 SINE MIR -27 181 51 484 259 101 53 chr1 59462034 59462245 -183202108 - MIR SINE MIR -23 239 15 695 216 10 36 chr1 59462245 59462324 -183202029 + MER5A DNA MER1_type 1 81 -108 2061 122 24 11 chr1 59462324 59462611 -183201742 + AluSx SINE Alu 1 291 -21 695 216 10 36 chr1 59462611 59462725 -183201628 + MER5A DNA MER1_type 81 189 0 484 259 101 53 chr1 59462725 59462741 -183201612 - MIR SINE MIR -247 15 1 748 222 25 86 chr1 59462770 59462916 -183201437 + MIR SINE MIR 24 151 -111 2289 99 0 0 chr1 59462916 59463208 -183201145 + AluSx SINE Alu 12 303 -9 748 222 25 86 chr1 59463208 59463304 -183201049 + MIR SINE MIR 151 251 -11 186 318 73 46 chr1 59463477 59463628 -183200725 + MIR SINE MIR 59 213 -49 * 223 305 0 0 chr1 59463599 59463658 -183200695 - MIR SINE MIR 0 262 204 1244 110 6 0 chr1 59463662 59463825 -183200528 - AluSc SINE Alu -53 256 93 547 176 0 0 chr1 59463945 59464036 -183200317 - AluS SINE Alu -221 92 2 627 259 43 5 chr1 59464046 59464231 -183200122 - MIR SINE MIR -67 195 4 194 188 42 21 chr1 59465018 59465066 -183199287 + MER5B DNA MER1_type 2 50 -128 180 0 0 0 chr1 59465209 59465229 -183199124 + (GA)n Simple_repeat Simple_repeat 1 20 0 306 0 0 0 chr1 59465249 59465283 -183199070 + (CA)n Simple_repeat Simple_repeat 2 35 0 2146 89 46 0 chr1 59465283 59465563 -183198790 - AluSx SINE Alu -19 293 1 2141 104 37 7 chr1 59466345 59466644 -183197709 + AluY SINE Alu 2 309 -2 969 104 26 212 chr1 59466667 59466711 -183197642 - L1MB3 LINE L1 -1 6170 6120 706 206 8 0 chr1 59466711 59466842 -183197511 + FLAM_C SINE Alu 1 132 -1 969 104 26 212 chr1 59466842 59466853 -183197500 - L1MB3 LINE L1 -51 6120 6109 1551 177 3 32 chr1 59466853 59467163 -183197190 - AluJb SINE Alu -11 301 1 969 104 26 212 chr1 59467163 59467184 -183197169 - L1MB3 LINE L1 -62 6109 6086 1660 199 10 10 chr1 59467184 59467490 -183196863 - AluJo SINE Alu -6 306 1 969 104 26 212 chr1 59467490 59467501 -183196852 - L1MB3 LINE L1 -85 6086 6075 1815 142 77 0 chr1 59467501 59467775 -183196578 - AluSx SINE Alu -17 295 1 969 104 26 212 chr1 59467775 59467991 -183196362 - L1MB3 LINE L1 -96 6075 5921 1484 182 44 6 chr1 59467991 59468311 -183196042 - L1 LINE L1 -1190 4956 4625 770 196 63 96 chr1 59468359 59468539 -183195814 - L1ME3 LINE L1 -2 6160 5990 673 180 16 172 chr1 59468539 59468795 -183195558 - MER20 DNA MER1_type -3 216 1 770 196 63 96 chr1 59468795 59468885 -183195468 - L1ME3 LINE L1 -172 5990 5899 183 42 0 0 chr1 59468892 59468916 -183195437 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1376 88 0 6 chr1 59468918 59469089 -183195264 - AluSp SINE Alu -22 291 122 1145 133 0 0 chr1 59469091 59469264 -183195089 - AluSg/x SINE Alu -6 306 134 2379 96 7 0 chr1 59469264 59469567 -183194786 - AluSp SINE Alu -8 305 1 1996 205 23 107 chr1 59469567 59469899 -183194454 - L1ME3 LINE L1 -255 5907 5549 1374 186 89 49 chr1 59469899 59470248 -183194105 - MLT1A1 LTR MaLR -2 363 1 1996 205 23 107 chr1 59470248 59470346 -183194007 - L1ME3 LINE L1 -613 5549 5444 2488 90 0 3 chr1 59470346 59470657 -183193696 + AluSp SINE Alu 1 310 -3 1996 205 23 107 chr1 59470657 59470995 -183193358 - L1ME3 LINE L1 -718 5444 5203 33 0 0 0 chr1 59471003 59471036 -183193317 + AT_rich Low_complexity Low_complexity 1 33 0 1907 153 7 10 chr1 59471037 59471325 -183193028 - AluSx SINE Alu -25 287 1 1298 149 10 5 chr1 59471444 59471639 -183192714 - AluJb SINE Alu -116 196 1 326 338 37 37 chr1 59471783 59472239 -183192114 + L1M4 LINE L1 2682 3137 -3009 1879 161 38 0 chr1 59472240 59472532 -183191821 + AluJo SINE Alu 1 303 -9 200 306 104 15 chr1 59472712 59472846 -183191507 - MIR3 SINE MIR -62 146 1 2065 132 36 7 chr1 59473329 59473632 -183190721 - AluSq SINE Alu -1 312 1 190 296 133 41 chr1 59473643 59473741 -183190612 + L2 LINE L2 2957 3063 -209 205 149 21 43 chr1 59473792 59473839 -183190514 + L2 LINE L2 3227 3272 0 226 253 25 0 chr1 59473958 59474037 -183190316 - L1MC4 LINE L1 -1 8041 7961 2046 131 37 8 chr1 59474040 59474391 -183189962 - MER46B DNA MER2_type 0 236 1 2111 131 10 0 chr1 59474678 59474983 -183189370 - AluJb SINE Alu -4 308 1 294 242 32 21 chr1 59475123 59475218 -183189135 - L2 LINE L2 0 3313 3218 198 103 0 0 chr1 59475719 59475748 -183188605 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 324 70 0 0 chr1 59475758 59475801 -183188552 + (CCTG)n Simple_repeat Simple_repeat 2 44 0 269 295 120 0 chr1 59476825 59476942 -183187411 + MIR SINE MIR 42 170 -63 303 267 39 67 chr1 59477015 59477195 -183187158 - MER20B DNA MER1_type -594 189 15 208 232 0 18 chr1 59477205 59477261 -183187092 - L2 LINE L2 -4 3268 3214 225 291 8 97 chr1 59477457 59477591 -183186762 - L2 LINE L2 -161 3111 2990 356 238 184 37 chr1 59477604 59477673 -183186680 - MIR SINE MIR -5 257 199 2140 133 3 0 chr1 59477673 59477967 -183186386 + AluSx SINE Alu 3 297 -15 356 238 184 37 chr1 59477967 59478069 -183186284 - MIR SINE MIR -63 199 75 1515 205 30 25 chr1 59478074 59478518 -183185835 - MLT1H LTR MaLR 0 549 1 181 410 43 4 chr1 59478597 59478829 -183185524 - L2 LINE L2 -338 2976 2736 2236 110 0 14 chr1 59478840 59479150 -183185203 - AluSq SINE Alu 0 306 1 3068 213 85 31 chr1 59479161 59479223 -183185130 - L1ME1 LINE L1 -6 6160 6103 1748 194 3 3 chr1 59479223 59479522 -183184831 - AluJo SINE Alu -13 299 1 3068 213 85 31 chr1 59479522 59480363 -183183990 - L1ME1 LINE L1 -63 6103 5214 358 309 123 0 chr1 59480593 59480755 -183183598 - L2 LINE L2 -6 3307 3126 231 313 176 8 chr1 59480866 59480997 -183183356 + MIR3 SINE MIR 19 171 -37 388 336 34 0 chr1 59481102 59481251 -183183102 - L3 LINE CR1 -22 1555 1402 1770 94 64 57 chr1 59482586 59482884 -183181469 + MER1B DNA MER1_type 40 339 0 1421 173 57 10 chr1 59482894 59483195 -183181158 + L1ME LINE L1 5254 5568 -598 2351 84 0 10 chr1 59483219 59483515 -183180838 + AluSx SINE Alu 1 293 -19 231 238 179 0 chr1 59483515 59483599 -183180754 + L1MD3 LINE L1 7884 7982 -13 436 191 45 171 chr1 59483652 59483742 -183180611 - Charlie7 DNA MER1_type -862 1750 1650 2463 92 0 16 chr1 59483742 59484059 -183180294 + AluSx SINE Alu 1 312 0 436 191 45 171 chr1 59484059 59484126 -183180227 - Charlie7 DNA MER1_type -962 1650 1576 1719 168 7 13 chr1 59484126 59484424 -183179929 - AluJo SINE Alu -16 296 1 2072 124 47 0 chr1 59484431 59484729 -183179624 - AluSx SINE Alu 0 312 1 436 191 45 171 chr1 59484729 59484808 -183179545 - Charlie7 DNA MER1_type -1042 1570 1536 1412 233 95 6 chr1 59484855 59485202 -183179151 + LTR16C LTR ERVL 114 491 0 242 227 53 0 chr1 59485206 59485281 -183179072 - Charlie7 DNA MER1_type -2533 79 1 315 326 11 0 chr1 59485332 59485427 -183178926 - L3 LINE CR1 -150 1427 1332 182 279 66 0 chr1 59486076 59486137 -183178216 - MIR SINE MIR -63 145 81 1909 233 20 42 chr1 59486774 59487268 -183177085 + MLT2B1 LTR ERVL 1 483 -37 1954 131 53 0 chr1 59487279 59487600 -183176753 + MER7A DNA MER2_type 1 336 -10 387 41 0 0 chr1 59487600 59487649 -183176704 + (TG)n Simple_repeat Simple_repeat 2 50 0 254 95 48 0 chr1 59487649 59487691 -183176662 + MLT2C2 LTR ERVL 421 464 0 * 722 242 43 6 chr1 59487691 59487851 -183176502 + MER63A DNA MER1_type 45 210 0 1331 167 56 13 chr1 59488265 59488499 -183175854 - AluJo SINE Alu -17 295 52 561 264 232 4 chr1 59488499 59488745 -183175608 - MLT1J2 LTR MaLR -139 311 10 258 256 64 0 chr1 59488827 59488905 -183175448 + L2 LINE L2 2571 2653 -661 409 221 58 10 chr1 59490293 59490397 -183173956 - MIR SINE MIR -66 142 34 502 276 50 13 chr1 59491387 59491559 -183172794 - MIR SINE MIR -55 153 3 219 282 155 42 chr1 59491981 59492123 -183172230 - MIR SINE MIR -70 192 35 355 271 15 23 chr1 59492196 59492222 -183172131 - L1MA10 LINE L1 -28 6306 6281 509 266 131 34 chr1 59492222 59492489 -183171864 - L1ME1 LINE L1 -44 6122 5842 467 229 186 44 chr1 59493870 59494053 -183170300 + MIR SINE MIR 28 236 -26 206 362 59 52 chr1 59494576 59494596 -183169757 - L2 LINE L2 -1 3271 3253 2623 57 0 0 chr1 59494596 59494894 -183169459 + AluY SINE Alu 1 298 -13 206 362 59 52 chr1 59494894 59495144 -183169209 - L2 LINE L2 -19 3253 2999 301 256 58 0 chr1 59495183 59495269 -183169084 + L2 LINE L2 3205 3295 -18 522 223 25 0 chr1 59495674 59495795 -183168558 + MER58B DNA MER1_type 207 330 -11 2134 104 3 17 chr1 59495802 59496100 -183168253 + AluSx SINE Alu 4 297 -15 809 269 127 28 chr1 59496128 59496522 -183167831 - L1ME1 LINE L1 -2023 5785 5353 1527 148 345 6 chr1 59496843 59497309 -183167044 + MER45B DNA AcHobo 417 1040 0 723 240 117 35 chr1 59497642 59497921 -183166432 + LTR16A LTR ERVL 51 370 -87 2312 107 10 0 chr1 59498108 59498418 -183165935 - AluSp SINE Alu 0 313 1 1697 177 133 28 chr1 59498421 59498914 -183165439 + MLT1F LTR MaLR 1 542 0 1362 130 53 0 chr1 59498958 59499165 -183165188 - AluSg/x SINE Alu -11 299 82 388 234 43 11 chr1 59499186 59499280 -183165073 + MIR SINE MIR 118 214 -48 992 277 113 55 chr1 59499627 59500187 -183164166 + L2 LINE L2 72 682 -2632 2524 65 0 10 chr1 59500187 59500495 -183163858 + AluY SINE Alu 1 305 -6 992 277 113 55 chr1 59500495 59500630 -183163723 + L2 LINE L2 682 808 -2506 590 274 69 0 chr1 59500688 59500863 -183163490 + MER58A DNA MER1_type 37 223 -1 3325 258 177 20 chr1 59500894 59502278 -183162075 + L2 LINE L2 836 2551 -763 2574 66 3 0 chr1 59502278 59502582 -183161771 + AluY SINE Alu 1 305 -6 3325 258 177 20 chr1 59502582 59502939 -183161414 + L2 LINE L2 2551 2851 -463 4364 165 45 19 chr1 59502979 59504165 -183160188 + L1MB5 LINE L1 4898 6148 -26 251 260 33 72 chr1 59504171 59504352 -183160001 + L2 LINE L2 2927 3100 -213 219 319 57 35 chr1 59505025 59505166 -183159187 - MIR SINE MIR -43 219 76 213 214 71 0 chr1 59505566 59505622 -183158731 + MIR SINE MIR 80 139 -123 198 227 91 23 chr1 59505717 59505805 -183158548 + MIR SINE MIR 110 203 -59 1064 75 8 0 chr1 59505834 59505967 -183158386 - AluY SINE Alu -16 295 162 258 311 114 15 chr1 59506643 59506775 -183157578 + MIR SINE MIR 89 233 -29 182 309 128 21 chr1 59506927 59507021 -183157332 + MIR3 SINE MIR 66 169 -39 442 293 95 0 chr1 59507433 59507580 -183156773 + MIR3 SINE MIR 30 190 -18 251 264 110 31 chr1 59507600 59507670 -183156683 + L1ME LINE L1 5584 5647 -474 2576 58 0 0 chr1 59507670 59507965 -183156388 + AluY SINE Alu 1 295 -16 251 264 110 31 chr1 59507965 59508057 -183156296 + L1ME LINE L1 5647 5759 -362 2084 132 3 0 chr1 59508215 59508522 -183155831 + AluSx SINE Alu 1 283 -29 680 301 70 31 chr1 59508550 59508985 -183155368 + L1ME4a LINE L1 5356 5804 -317 228 135 0 0 chr1 59509000 59509037 -183155316 + (CA)n Simple_repeat Simple_repeat 2 38 0 1854 119 15 67 chr1 59509051 59509201 -183155152 + AluJo SINE Alu 1 126 -186 2047 110 7 13 chr1 59509201 59509501 -183154852 + AluSx SINE Alu 1 298 -14 1854 119 15 67 chr1 59509501 59509678 -183154675 + AluJo SINE Alu 126 311 -1 320 277 101 57 chr1 59509823 59509851 -183154502 + L1ME4a LINE L1 5956 5981 -140 1853 143 84 12 chr1 59509851 59510172 -183154181 + MER2 DNA MER2_type 1 344 0 320 277 101 57 chr1 59510172 59510302 -183154051 + L1ME4a LINE L1 5981 6121 0 297 128 0 0 chr1 59510406 59510445 -183153908 - Alu SINE Alu -263 39 1 242 209 0 0 chr1 59510446 59510489 -183153864 + MIR SINE MIR 103 145 -63 212 324 29 44 chr1 59511522 59511658 -183152695 - MIR SINE MIR -58 150 17 7364 119 38 15 chr1 59512537 59513057 -183151296 + Tigger3b DNA MER2_type 4 511 -2517 1772 151 7 7 chr1 59513057 59513349 -183151004 - AluJb SINE Alu -20 292 1 7364 119 38 15 chr1 59513349 59514029 -183150324 + Tigger3b DNA MER2_type 511 1231 0 501 189 102 174 chr1 59514090 59514365 -183149988 + MIR SINE MIR 2 256 -6 872 276 108 14 chr1 59514920 59515272 -183149081 + L3 LINE CR1 1139 1523 -54 226 253 84 72 chr1 59515691 59515771 -183148582 - L1ME4a LINE L1 -4 6117 6039 2225 107 0 0 chr1 59515771 59516071 -183148282 + AluSx SINE Alu 1 300 -12 226 253 84 72 chr1 59516071 59516156 -183148197 - L1ME4a LINE L1 -82 6039 5950 1745 147 170 25 chr1 59516162 59516515 -183147838 - MER4A LTR ERV1 0 664 261 593 95 53 21 chr1 59516515 59516610 -183147743 - MER4A LTR ERV1 -566 98 1 276 260 0 21 chr1 59516660 59516756 -183147597 - L1ME4a LINE L1 -224 5897 5804 672 211 58 0 chr1 59516762 59516918 -183147435 + L1ME1 LINE L1 36 200 -6196 508 95 83 0 chr1 59516919 59517003 -183147350 + FLAM_A SINE Alu 46 136 -6 3147 236 77 51 chr1 59517016 59517128 -183147225 + L1ME1 LINE L1 193 301 -6095 1916 130 20 3 chr1 59517128 59517420 -183146933 + AluSx SINE Alu 1 297 -15 3147 236 77 51 chr1 59517420 59517624 -183146729 + L1ME1 LINE L1 301 498 -5898 2324 85 0 22 chr1 59517624 59517941 -183146412 + AluSq SINE Alu 1 310 -3 3147 236 77 51 chr1 59517941 59518435 -183145918 + L1ME1 LINE L1 498 1045 -5351 1954 117 10 19 chr1 59518435 59518744 -183145609 + AluSx SINE Alu 1 306 -6 3147 236 77 51 chr1 59518744 59519077 -183145276 + L1ME1 LINE L1 1045 1368 -5028 2150 229 57 9 chr1 59519129 59519774 -183144579 + L1ME1 LINE L1 2934 3609 -2606 6221 108 39 27 chr1 59519783 59519874 -183144479 + L1PA13 LINE L1 5027 5115 -1048 1926 137 0 0 chr1 59519874 59520198 -183144155 + AluSx SINE Alu 1 324 0 6221 108 39 27 chr1 59520198 59520258 -183144095 + L1PA13 LINE L1 5115 5173 -990 2128 109 0 3 chr1 59520258 59520552 -183143801 + AluSx SINE Alu 1 293 -19 6221 108 39 27 chr1 59520552 59521530 -183142823 + L1PA13 LINE L1 5173 6163 0 3040 205 43 49 chr1 59521575 59522337 -183142016 + L1ME1 LINE L1 5386 6143 -92 256 167 56 0 chr1 59522369 59522423 -183141930 - MIR SINE MIR -131 131 75 453 264 109 42 chr1 59522423 59522662 -183141691 - L1ME4a LINE L1 -316 5805 5551 558 304 121 10 chr1 59523475 59523682 -183140671 - MIR SINE MIR 0 262 33 264 271 43 0 chr1 59523723 59523793 -183140560 - MIR SINE MIR -2 260 188 1072 203 191 32 chr1 59524056 59524465 -183139888 + MLT1K LTR MaLR 3 476 0 340 306 153 14 chr1 59524853 59524997 -183139356 + MIR SINE MIR 21 184 -78 283 354 136 0 chr1 59525087 59525234 -183139119 - L2 LINE L2 -10 3262 3096 184 355 103 0 chr1 59527079 59527186 -183137167 - MIR SINE MIR -52 210 93 259 237 86 0 chr1 59527322 59527415 -183136938 - L2 LINE L2 -30 3242 3142 397 309 116 59 chr1 59527528 59527952 -183136401 + L2 LINE L2 2824 3271 -1 1317 142 50 0 chr1 59528057 59528318 -183136035 + MER33 DNA MER1_type 38 311 -13 1435 181 26 48 chr1 59528645 59528954 -183135399 + AluJo SINE Alu 1 302 -10 1011 186 56 40 chr1 59529131 59529383 -183134970 - L1ME1 LINE L1 -18 6148 5893 22 35 0 0 chr1 59529755 59529784 -183134569 + AT_rich Low_complexity Low_complexity 1 29 0 550 306 71 0 chr1 59529981 59530151 -183134202 + MER5A DNA MER1_type 1 182 -7 2324 93 0 0 chr1 59530203 59530505 -183133848 + AluY SINE Alu 1 302 -9 1786 133 11 7 chr1 59530569 59530854 -183133499 + AluSx SINE Alu 11 296 -16 351 258 208 6 chr1 59530874 59531033 -183133320 - MLT1L LTR MaLR -117 498 308 353 289 81 117 chr1 59531069 59531463 -183132890 - L2 LINE L2 -3 3269 2890 350 294 198 36 chr1 59531485 59531818 -183132535 - L2 LINE L2 -556 2758 2372 324 287 61 17 chr1 59532091 59532272 -183132081 - HAL1b LINE L1 -1 1347 1159 294 260 10 0 chr1 59532392 59532488 -183131865 - L1ME1 LINE L1 -2017 5791 5695 2503 120 54 9 chr1 59532514 59532940 -183131413 - MER65A LTR ERV1 0 445 1 30 27 0 0 chr1 59532944 59532981 -183131372 + AT_rich Low_complexity Low_complexity 1 37 0 828 132 16 0 chr1 59532985 59533114 -183131239 + FLAM_C SINE Alu 1 131 -12 2445 62 0 3 chr1 59533186 59533491 -183130862 - AluY SINE Alu -7 304 1 1793 91 113 11 chr1 59534282 59534547 -183129806 - AluSc SINE Alu -17 292 1 979 192 106 0 chr1 59534581 59534779 -183129574 - MER20 DNA MER1_type 0 219 1 389 78 0 0 chr1 59534917 59534968 -183129385 + Alu SINE Alu 245 295 -6 2339 79 0 3 chr1 59534976 59535281 -183129072 + AluY SINE Alu 3 306 -5 1652 184 46 27 chr1 59535290 59535598 -183128755 - MER69 DNA AcHobo -169 2357 2038 2172 109 3 0 chr1 59535598 59535901 -183128452 - AluSx SINE Alu -8 304 1 1652 184 46 27 chr1 59535901 59536005 -183128348 - MER69 DNA AcHobo -488 2038 1937 268 291 25 13 chr1 59536001 59536080 -183128273 - MER69 DNA AcHobo -1146 80 1 * 250 336 48 24 chr1 59536302 59536427 -183127926 - L2 LINE L2 -4 3309 3182 2440 192 97 18 chr1 59536507 59537002 -183127351 + MLT2B3 LTR ERVL 1 534 -20 318 50 0 0 chr1 59537002 59537042 -183127311 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 314 110 0 137 chr1 59537052 59537125 -183127228 + MLT2B3 LTR ERVL 458 554 0 2540 86 136 5 chr1 59537292 59537688 -183126665 - LTR7 LTR ERV1 -2 448 1 2382 106 48 13 chr1 59537688 59538067 -183126286 - HERVH LTR ERV1 0 7713 7322 1278 148 23 9 chr1 59538065 59538282 -183126071 - HERVH LTR ERV1 -1894 5819 5600 * 4387 148 0 1 chr1 59538283 59538946 -183125407 - HERVH LTR ERV1 -2564 5149 4488 3332 121 4 6 chr1 59538948 59539451 -183124902 - HERVH LTR ERV1 -3720 3993 3492 900 142 20 0 chr1 59539441 59539589 -183124764 - HERVH LTR ERV1 -4423 3290 3140 * 20977 97 11 11 chr1 59539583 59542572 -183121781 - HERVH LTR ERV1 -4726 2987 1 2564 90 128 5 chr1 59542574 59542973 -183121380 - LTR7 LTR ERV1 -2 448 1 190 211 158 35 chr1 59543339 59543396 -183120957 + L2 LINE L2 3160 3223 -49 1561 177 0 7 chr1 59543434 59543717 -183120636 - AluJo SINE Alu -19 293 13 916 226 40 0 chr1 59544889 59545066 -183119287 + MER5A DNA MER1_type 3 186 -3 2127 85 3 3 chr1 59545075 59545388 -183118965 + AluY SINE Alu 1 313 0 543 113 31 31 chr1 59545405 59545502 -183118851 + MER4A LTR ERV1 2 98 -566 1557 136 9 95 chr1 59545502 59545854 -183118499 + MER4A LTR ERV1 261 640 -24 1272 114 0 0 chr1 59545855 59546030 -183118323 + AluSx SINE Alu 1 175 -137 189 0 0 0 chr1 59546058 59546079 -183118274 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 245 234 234 0 chr1 59546125 59546219 -183118134 - L3 LINE CR1 -243 1334 1219 3279 86 0 13 chr1 59546260 59546714 -183117639 - LTR7 LTR ERV1 -2 448 1 2485 65 0 0 chr1 59546722 59547031 -183117322 - AluY SINE Alu -2 309 1 23218 78 8 5 chr1 59547031 59550091 -183114262 - HERVH LTR ERV1 -2 7711 4641 1087 116 18 0 chr1 59550082 59550246 -183114107 - HERVH LTR ERV1 -4392 3321 3155 * 184 281 56 56 chr1 59550306 59550395 -183113958 - MIR SINE MIR -6 256 168 6270 52 30 1 chr1 59550397 59551155 -183113198 - LTR17 LTR ERV1 0 780 1 14284 54 5 7 chr1 59551155 59551659 -183112694 - HERV17 LTR ERV1 0 8626 8122 2092 101 3 0 chr1 59551659 59551998 -183112355 + AluY SINE Alu 1 340 0 14284 54 5 7 chr1 59551998 59553220 -183111133 - HERV17 LTR ERV1 -504 8122 6902 * 35859 57 7 1 chr1 59553211 59558187 -183106166 - HERV17 LTR ERV1 -3559 5067 1 5682 63 68 3 chr1 59558187 59558919 -183105434 - LTR17 LTR ERV1 0 780 1 284 261 46 69 chr1 59558938 59559068 -183105285 - MIR SINE MIR -116 146 20 706 300 29 4 chr1 59559162 59559402 -183104951 + MIR SINE MIR 7 252 -10 266 338 39 42 chr1 59559497 59559805 -183104548 + L2 LINE L2 2567 2873 -441 259 300 160 7 chr1 59560093 59560243 -183104110 + MIR SINE MIR 20 192 -70 2245 122 0 0 chr1 59560370 59560673 -183103680 - AluSx SINE Alu -9 303 1 2100 93 4 14 chr1 59560717 59560996 -183103357 - AluY SINE Alu -35 276 1 201 255 0 0 chr1 59561175 59561226 -183103127 - L2 LINE L2 -37 3235 3185 788 126 30 7 chr1 59561459 59561594 -183102759 - L1MB7 LINE L1 -18 6166 6029 3148 78 29 20 chr1 59561604 59562052 -183102301 - L1PA13 LINE L1 -2 6161 5710 2185 118 3 7 chr1 59562890 59563195 -183101158 + AluSx SINE Alu 1 304 -8 6969 82 5 16 chr1 59563397 59564388 -183099965 - MER11C LTR ERVK 0 1071 1 246 139 0 0 chr1 59564686 59564722 -183099631 - MER52A LTR ERV1 -511 1244 1209 278 320 73 40 chr1 59564908 59565058 -183099295 - MIR SINE MIR -71 191 37 395 220 30 0 chr1 59565178 59565278 -183099075 - MER5A DNA MER1_type -83 106 4 328 321 22 44 chr1 59565294 59565431 -183098922 - MIR SINE MIR -59 149 15 608 178 22 22 chr1 59565433 59565507 -183098846 + LTR50 LTR ERVL 1 77 -718 1642 183 56 31 chr1 59565507 59565863 -183098490 + MLT1A1 LTR MaLR 1 365 0 608 178 22 22 chr1 59565863 59565923 -183098430 + LTR50 LTR ERVL 76 135 -660 913 60 26 7 chr1 59565937 59566088 -183098265 + (GA)n Simple_repeat Simple_repeat 1 154 0 719 249 147 4 chr1 59566102 59566489 -183097864 + LTR50 LTR ERVL 220 754 -41 285 29 0 0 chr1 59566635 59566669 -183097684 + (CA)n Simple_repeat Simple_repeat 2 35 0 196 308 77 0 chr1 59567229 59567307 -183097046 - L2 LINE L2 -4 3268 3185 827 223 0 6 chr1 59567502 59567668 -183096685 - AluJb SINE Alu -15 297 133 641 264 104 13 chr1 59567775 59568006 -183096347 + MIR SINE MIR 8 259 -3 2220 134 74 20 chr1 59570087 59570336 -183094017 - MSTB LTR MaLR 0 426 143 1682 131 108 0 chr1 59570336 59570623 -183093730 + AluSx SINE Alu 1 315 0 2220 134 74 20 chr1 59570623 59570775 -183093578 - MSTB LTR MaLR -283 143 1 2329 94 17 3 chr1 59571339 59571637 -183092716 + AluSq SINE Alu 1 302 -11 645 128 0 0 chr1 59571637 59571739 -183092614 + (TA)n Simple_repeat Simple_repeat 1 102 0 326 307 27 44 chr1 59572050 59572275 -183092078 - LTR24C-int LTR ERV1 -3797 4938 4718 282 304 49 68 chr1 59572671 59572871 -183091482 - LTR24C-int LTR ERV1 -4379 4047 3856 2212 128 0 3 chr1 59572871 59573168 -183091185 - AluSx SINE Alu -16 296 1 282 304 49 68 chr1 59573168 59573332 -183091021 - LTR24C-int LTR ERV1 -4570 3856 3690 2338 114 22 30 chr1 59573471 59573838 -183090515 - THE1B LTR MaLR 0 364 1 753 318 24 47 chr1 59573913 59573960 -183090393 - LTR24C-int LTR ERV1 -4064 583 536 2114 116 0 71 chr1 59573960 59574296 -183090057 + AluSx SINE Alu 1 312 0 753 318 24 47 chr1 59574296 59574629 -183089724 - LTR24C-int LTR ERV1 -4111 536 212 701 180 31 0 chr1 59574639 59574767 -183089586 - FLAM_C SINE Alu 0 143 12 271 152 87 0 chr1 59574767 59574813 -183089540 - Alu SINE Alu -253 50 1 2153 82 0 0 chr1 59575105 59575373 -183088980 + AluY SINE Alu 44 311 0 371 59 0 0 chr1 59575567 59575618 -183088735 - AluY SINE Alu 0 302 252 1283 65 0 19 chr1 59575620 59575775 -183088578 - AluY SINE Alu -159 152 1 180 111 0 0 chr1 59575814 59575841 -183088512 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 519 60 0 0 chr1 59575875 59575942 -183088411 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 2019 132 0 0 chr1 59575947 59576220 -183088133 - AluSx SINE Alu -39 273 1 208 304 0 13 chr1 59577361 59577440 -183086913 + GA-rich Low_complexity Low_complexity 3 80 0 456 292 110 61 chr1 59577812 59578076 -183086277 - LTR24C-int LTR ERV1 -6077 681 405 691 280 33 69 chr1 59578188 59578306 -183086047 - LTR24C-int LTR ERV1 -4519 604 483 2089 132 44 16 chr1 59578306 59578671 -183085682 - THE1C LTR MaLR 0 375 1 691 280 33 69 chr1 59578671 59579031 -183085322 - LTR24C-int LTR ERV1 -4640 483 1 2736 155 102 37 chr1 59579040 59579628 -183084725 - LTR24C LTR ERV1 -9 626 1 916 266 83 19 chr1 59579657 59580029 -183084324 + LTR68 LTR ERV1 1 396 -344 221 311 67 25 chr1 59580228 59580347 -183084006 - L2 LINE L2 -15 3257 3134 3596 138 20 0 chr1 59580516 59581068 -183083285 - Tigger7 DNA MER2_type -1545 942 380 445 282 134 56 chr1 59581068 59581477 -183082876 + L2 LINE L2 2627 3003 -310 1842 133 86 47 chr1 59581477 59581838 -183082515 + THE1C LTR MaLR 1 375 0 11714 92 12 6 chr1 59581839 59583408 -183080945 + THE1C-int LTR MaLR 2 1580 0 1913 147 52 33 chr1 59583408 59583776 -183080577 + THE1C LTR MaLR 1 375 0 445 282 134 56 chr1 59583776 59583856 -183080497 + L2 LINE L2 3003 3075 -238 1555 147 28 94 chr1 59583856 59584176 -183080177 + AluJb SINE Alu 1 299 -13 445 282 134 56 chr1 59584176 59584280 -183080073 + L2 LINE L2 3075 3285 -28 345 310 28 21 chr1 59585670 59585812 -183078541 + MIR SINE MIR 40 182 -80 2290 83 40 0 chr1 59586115 59586415 -183077938 - AluSp SINE Alu -1 312 1 190 258 56 118 chr1 59586530 59586589 -183077764 - MIR SINE MIR -80 182 121 2107 137 0 10 chr1 59586589 59586889 -183077464 - AluSx SINE Alu -15 297 1 190 258 56 118 chr1 59586889 59587007 -183077346 - MIR SINE MIR -141 121 16 253 272 25 12 chr1 59587081 59587162 -183077191 - MIR SINE MIR -61 147 66 2371 71 13 29 chr1 59587236 59587547 -183076806 - AluY SINE Alu -5 306 1 2353 95 0 3 chr1 59588025 59588330 -183076023 - AluY SINE Alu -7 304 1 2382 135 22 0 chr1 59588330 59588686 -183075667 - THE1B LTR MaLR 0 364 1 686 185 15 15 chr1 59588902 59589032 -183075321 + FLAM_C SINE Alu 1 130 -3 2193 105 0 3 chr1 59589042 59589336 -183075017 - AluSg SINE Alu -17 293 1 274 229 57 57 chr1 59590421 59590462 -183073891 + MIR SINE MIR 60 100 -162 3383 153 20 77 chr1 59590462 59591194 -183073159 - LTR8 LTR ERV1 0 691 1 274 229 57 57 chr1 59591194 59591257 -183073096 + MIR SINE MIR 99 164 -98 4347 72 5 4 chr1 59591335 59591888 -183072465 + MER41A LTR ERV1 1 554 0 330 108 150 0 chr1 59591888 59591963 -183072390 + MER41A-int LTR ERV1 1 55 -5891 746 234 141 9 chr1 59592734 59592961 -183071392 + MIR SINE MIR 3 259 -3 218 328 49 0 chr1 59593054 59593176 -183071177 - MIR SINE MIR -50 212 85 644 266 83 85 chr1 59593335 59593603 -183070750 - MLT1J2 LTR MaLR -1 445 190 420 304 40 24 chr1 59593717 59593970 -183070383 - L2 LINE L2 -192 3080 2824 955 233 121 59 chr1 59594187 59594660 -183069693 - L1M4 LINE L1 -1780 4366 3865 829 202 77 6 chr1 59594683 59594765 -183069588 + MER20 DNA MER1_type 1 76 -143 207 0 0 0 chr1 59594765 59594788 -183069565 + (TG)n Simple_repeat Simple_repeat 1 23 0 829 202 77 6 chr1 59594788 59594873 -183069480 + MER20 DNA MER1_type 76 180 -39 2573 95 53 0 chr1 59594878 59595236 -183069117 + MER51B LTR ERV1 1 377 0 7461 142 23 29 chr1 59595236 59596494 -183067859 + MER51B-int LTR ERV1 1 1250 -6566 183 205 0 0 chr1 59596586 59596625 -183067728 + (TA)n Simple_repeat Simple_repeat 1 39 0 302 175 0 126 chr1 59596628 59596731 -183067622 - L1MC4 LINE L1 -1339 6703 6614 * 313 263 30 50 chr1 59596670 59596769 -183067584 + L1MC4 LINE L1 6610 6706 -1336 1369 229 32 45 chr1 59596786 59597183 -183067170 + LTR10C LTR ERV1 188 547 0 625 66 0 0 chr1 59597186 59597262 -183067091 - tRNA-Lys-AAG tRNA tRNA 0 76 1 445 45 15 30 chr1 59597292 59597359 -183066994 + MER51B-int LTR ERV1 1185 1250 -6566 2496 120 34 12 chr1 59597359 59597768 -183066585 + MER51B-int LTR ERV1 802 1219 -6901 439 181 60 60 chr1 59597768 59597884 -183066469 + MER4A LTR ERV1 1 116 -548 857 143 30 77 chr1 59597903 59598071 -183066282 + MER4A LTR ERV1 372 531 -133 8659 98 68 24 chr1 59598073 59599014 -183065339 + MER51B-int LTR ERV1 1799 2832 -4984 2200 107 0 0 chr1 59599014 59599323 -183065030 + AluSg1 SINE Alu 1 309 0 8659 98 68 24 chr1 59599323 59599843 -183064510 + MER51B-int LTR ERV1 2832 3327 -4489 2627 134 98 20 chr1 59599825 59600326 -183064027 + MER51B-int LTR ERV1 2829 3368 -2578 * 530 54 0 0 chr1 59600305 59600379 -183063974 + MER51B-int LTR ERV1 2210 2283 -2934 * 7853 149 99 47 chr1 59600369 59602902 -183061451 + MER51B-int LTR ERV1 5199 7816 0 2396 83 112 0 chr1 59602903 59603242 -183061111 + MER51B LTR ERV1 1 377 0 1901 153 11 0 chr1 59603284 59603571 -183060782 - AluJo SINE Alu -18 294 5 240 278 0 42 chr1 59603576 59603648 -183060705 - L1M4 LINE L1 -2310 3836 3768 430 121 0 0 chr1 59603664 59603730 -183060623 - AluSp/q SINE Alu -8 305 240 738 234 16 5 chr1 59603731 59603923 -183060430 - L1M4 LINE L1 -2379 3767 3574 346 322 27 27 chr1 59604466 59604612 -183059741 + MIR SINE MIR 21 166 -96 236 278 60 60 chr1 59604620 59604639 -183059714 - LTR67 LTR ERVL -51 506 488 2199 94 0 32 chr1 59604639 59604947 -183059406 + AluSq SINE Alu 1 298 -15 236 278 60 60 chr1 59604947 59605078 -183059275 - LTR67 LTR ERVL -68 489 356 761 252 161 54 chr1 59605387 59605835 -183058518 + MLT1L LTR MaLR 118 613 -2 257 226 30 3 chr1 59606890 59606970 -183057383 + MIR SINE MIR 71 150 -63 491 244 113 12 chr1 59607089 59607249 -183057104 + MER104 DNA MER2_type 5 180 0 1417 174 43 59 chr1 59607272 59607467 -183056886 - MER58B DNA MER1_type -2080 340 150 2260 112 0 0 chr1 59607467 59607762 -183056591 - AluSg SINE Alu -15 295 1 1417 174 43 59 chr1 59607762 59607888 -183056465 - MER58B DNA MER1_type -2270 150 24 214 247 0 78 chr1 59608059 59608136 -183056217 - L2 LINE L2 -203 3069 2999 229 159 0 23 chr1 59608621 59608665 -183055688 + MLT1K LTR MaLR 190 232 -356 316 324 79 14 chr1 59609034 59609250 -183055103 - L2 LINE L2 -626 2688 2459 234 327 97 0 chr1 59609305 59609418 -183054935 - L2 LINE L2 -1026 2288 2165 2240 95 9 49 chr1 59609649 59609975 -183054378 - AluSq SINE Alu 0 313 1 272 259 0 0 chr1 59610248 59610306 -183054047 + MIR SINE MIR 99 156 -106 27 0 0 0 chr1 59611432 59611459 -183052894 + AT_rich Low_complexity Low_complexity 1 27 0 319 286 15 45 chr1 59611619 59611752 -183052601 - MIR3 SINE MIR -6 202 74 331 231 54 28 chr1 59611824 59611942 -183052411 - MIR3 SINE MIR -46 162 38 296 265 265 0 chr1 59612421 59612572 -183051781 - MIR3 SINE MIR -12 196 6 281 172 46 103 chr1 59613230 59613317 -183051036 - L2 LINE L2 -2 3311 3230 369 244 86 133 chr1 59613410 59613539 -183050814 + MIR SINE MIR 28 143 -119 2699 170 30 19 chr1 59613539 59614115 -183050238 + L1MB8 LINE L1 5597 6178 0 369 244 86 133 chr1 59614115 59614219 -183050134 + MIR SINE MIR 143 250 -12 2487 79 3 0 chr1 59614220 59614523 -183049830 - AluSp SINE Alu -9 304 1 2246 193 98 40 chr1 59615032 59615561 -183048792 + MLT1E2 LTR MaLR 64 623 -3 1178 219 75 31 chr1 59615683 59615883 -183048470 - MER58B DNA MER1_type -2079 341 120 2132 132 7 0 chr1 59615883 59616186 -183048167 - AluSx SINE Alu -7 305 1 1178 219 75 31 chr1 59616186 59616304 -183048049 - MER58B DNA MER1_type -2300 120 9 216 294 0 15 chr1 59616401 59616469 -183047884 + MIR SINE MIR 55 121 -87 387 115 42 73 chr1 59616735 59616831 -183047522 - MER20 DNA MER1_type 0 219 127 1982 118 14 24 chr1 59616833 59617121 -183047232 - AluSx SINE Alu -27 285 1 189 107 0 0 chr1 59617186 59617214 -183047139 + (A)n Simple_repeat Simple_repeat 1 28 0 193 336 34 25 chr1 59617282 59617401 -183046952 - L2 LINE L2 -181 3091 2972 225 212 38 121 chr1 59617710 59617842 -183046511 + MIR SINE MIR 1 121 -141 206 328 47 0 chr1 59618300 59618364 -183045989 - MIR SINE MIR -70 192 126 193 260 135 62 chr1 59618729 59618825 -183045528 + MIR SINE MIR 28 130 -78 240 258 0 0 chr1 59618865 59618931 -183045422 + MIR SINE MIR 65 130 -78 215 247 52 41 chr1 59619101 59619198 -183045155 + L2 LINE L2 2883 2980 -292 216 158 0 0 chr1 59619242 59619280 -183045073 + (CA)n Simple_repeat Simple_repeat 2 39 0 217 242 165 0 chr1 59619345 59619436 -183044917 - MIR SINE MIR -58 204 99 274 180 40 90 chr1 59619626 59619726 -183044627 + MIR3 SINE MIR 89 183 -25 2122 103 0 0 chr1 59620656 59620929 -183043424 + AluSx SINE Alu 1 273 -39 207 0 0 0 chr1 59620938 59620961 -183043392 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 31 44 0 0 chr1 59621213 59621258 -183043095 + AT_rich Low_complexity Low_complexity 1 45 0 206 246 70 0 chr1 59621280 59621337 -183043016 - MIR SINE MIR -108 154 94 282 258 22 56 chr1 59622213 59622302 -183042051 + MIR SINE MIR 165 250 -12 181 57 57 0 chr1 59622418 59622453 -183041900 + T-rich Low_complexity Low_complexity 1 37 0 2144 95 0 34 chr1 59622453 59622743 -183041610 - AluSx SINE Alu -32 280 1 267 212 15 30 chr1 59622889 59622955 -183041398 + MIR SINE MIR 81 145 -63 201 74 0 0 chr1 59623365 59623392 -183040961 + (CA)n Simple_repeat Simple_repeat 1 27 0 449 268 132 40 chr1 59623913 59624141 -183040212 - L2 LINE L2 -19 3253 3005 233 300 26 90 chr1 59624300 59624533 -183039820 - L1ME LINE L1 -199 5922 5676 363 44 0 0 chr1 59624533 59624578 -183039775 + (TG)n Simple_repeat Simple_repeat 1 45 0 2274 93 0 0 chr1 59624578 59624857 -183039496 - AluSx SINE Alu -33 279 1 233 300 26 90 chr1 59624857 59624889 -183039464 - L1ME LINE L1 -443 5678 5673 484 260 70 3 chr1 59625179 59625366 -183038987 - MIR SINE MIR -16 246 43 315 321 136 25 chr1 59625849 59626080 -183038273 - L2 LINE L2 -9 3263 3006 451 335 19 7 chr1 59626080 59626235 -183038118 + MIR SINE MIR 1 157 -105 913 281 16 0 chr1 59626240 59626486 -183037867 - MIR SINE MIR 0 262 13 287 304 22 0 chr1 59626487 59626579 -183037774 + MIR SINE MIR 158 251 -11 550 156 35 98 chr1 59626679 59626852 -183037501 - MER106B DNA MER1_type 0 1059 898 354 200 15 0 chr1 59627284 59627349 -183037004 - MER2 DNA MER2_type 0 345 280 452 289 41 36 chr1 59627375 59627569 -183036784 - MIR3 SINE MIR -4 204 10 403 292 15 31 chr1 59628032 59628162 -183036191 - L2 LINE L2 -1 3312 3185 258 284 45 30 chr1 59628199 59628333 -183036020 + MIR SINE MIR 57 192 -70 273 286 33 0 chr1 59628430 59628521 -183035832 - MIR SINE MIR -73 189 96 217 274 179 0 chr1 59628604 59628699 -183035654 + MIR SINE MIR 124 235 -27 314 173 40 13 chr1 59629302 59629377 -183034976 - MIR SINE MIR -111 151 75 364 316 83 6 chr1 59630104 59630272 -183034081 - MIR SINE MIR -68 194 14 352 275 55 0 chr1 59630582 59630673 -183033680 + L3 LINE CR1 1394 1489 -88 287 246 0 0 chr1 59631469 59631526 -183032827 + L2 LINE L2 3205 3261 -11 612 236 92 24 chr1 59631534 59631759 -183032594 - MLT1H1 LTR MaLR 0 555 347 536 258 33 50 chr1 59631816 59631870 -183032483 + MIR SINE MIR 20 73 -189 1374 181 132 8 chr1 59631870 59632136 -183032217 - AluJb SINE Alu -13 299 1 536 258 33 50 chr1 59632136 59632263 -183032090 + MIR SINE MIR 73 198 -64 254 214 0 0 chr1 59632414 59632470 -183031883 - L3 LINE CR1 -96 1481 1426 186 197 16 66 chr1 59632559 59632620 -183031733 - MIR SINE MIR -93 115 58 290 286 19 50 chr1 59632817 59632978 -183031375 + L2 LINE L2 2610 2765 -549 2467 84 7 3 chr1 59633034 59633342 -183031011 + AluSg1 SINE Alu 1 309 0 184 214 86 29 chr1 59633835 59633905 -183030448 - MIR3 SINE MIR -54 154 81 1261 211 106 32 chr1 59634548 59635284 -183029069 - L2 LINE L2 -49 3264 2482 196 262 66 0 chr1 59635395 59635456 -183028897 + L2 LINE L2 2909 2973 -340 23 0 0 0 chr1 59636158 59636181 -183028172 + AT_rich Low_complexity Low_complexity 1 23 0 452 222 118 35 chr1 59637567 59637711 -183026642 - MIR SINE MIR -99 163 8 733 221 96 15 chr1 59637751 59637950 -183026403 + MIR SINE MIR 48 262 0 378 0 0 0 chr1 59638839 59638881 -183025472 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 300 232 217 11 chr1 59639291 59639411 -183024942 + MIR SINE MIR 4 145 -63 231 228 35 0 chr1 59639596 59639653 -183024700 - MIR SINE MIR -144 118 60 342 309 9 0 chr1 59639664 59639774 -183024579 + MIR SINE MIR 43 153 -55 378 0 0 0 chr1 59640522 59640564 -183023789 + (TG)n Simple_repeat Simple_repeat 2 43 0 239 266 208 13 chr1 59641061 59641316 -183023037 - L2 LINE L2 -226 3046 2753 1565 155 4 0 chr1 59641344 59641576 -183022777 - AluJo SINE Alu -79 233 1 340 339 47 29 chr1 59641577 59642025 -183022328 - L1M4 LINE L1 -3009 3137 2682 381 308 7 116 chr1 59642039 59642169 -183022184 - L1M4 LINE L1 -3595 2551 2469 1944 138 32 0 chr1 59642169 59642451 -183021902 + AluJb SINE Alu 1 291 -21 381 308 7 116 chr1 59642451 59642612 -183021741 - L1M4 LINE L1 -3677 2469 2292 2240 116 0 0 chr1 59642647 59642939 -183021414 - AluSq SINE Alu -17 296 5 354 355 50 37 chr1 59643045 59643287 -183021066 - HAL1b LINE L1 -785 563 319 2419 248 107 70 chr1 59643297 59643792 -183020561 + HAL1 LINE L1 21 496 -2011 2218 125 3 0 chr1 59643792 59644111 -183020242 + AluSp SINE Alu 1 313 0 2419 248 107 70 chr1 59644111 59644675 -183019678 + HAL1 LINE L1 496 1119 -1388 342 313 78 24 chr1 59645140 59645306 -183019047 - L1ME4a LINE L1 -3 6118 5944 411 317 0 21 chr1 59645471 59645616 -183018737 - L1M4 LINE L1 -1624 4522 4381 201 167 0 0 chr1 59645639 59645675 -183018678 + A-rich Low_complexity Low_complexity 1 36 0 1770 155 7 46 chr1 59645684 59645988 -183018365 + AluJb SINE Alu 1 292 -20 351 330 25 5 chr1 59646116 59646313 -183018040 - L1M4 LINE L1 -1902 4244 4044 417 240 116 20 chr1 59646626 59646772 -183017581 - MIR SINE MIR -56 206 47 380 232 9 80 chr1 59647088 59647200 -183017153 + MIR SINE MIR 43 146 -62 345 219 52 10 chr1 59647265 59647361 -183016992 + HAL1 LINE L1 1 100 -2407 11005 213 52 24 chr1 59647368 59648965 -183015388 + L1M1 LINE L1 3 1553 -5295 2412 70 0 7 chr1 59648965 59649263 -183015090 + AluY SINE Alu 3 298 -13 11005 213 52 24 chr1 59649263 59649976 -183014377 + L1M1 LINE L1 1553 2244 -4604 1725 174 13 34 chr1 59649976 59650274 -183014079 + AluJb SINE Alu 1 292 -20 11005 213 52 24 chr1 59650274 59650342 -183014011 + L1M1 LINE L1 2244 2309 -4539 183 42 0 0 chr1 59650342 59650366 -183013987 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 11005 213 52 24 chr1 59650366 59651494 -183012859 + L1M1 LINE L1 2309 3613 -3235 1327 165 10 10 chr1 59651498 59651704 -183012649 + AluJb SINE Alu 1 206 -106 1039 155 30 44 chr1 59651717 59651988 -183012365 + L1M1 LINE L1 3677 3943 -2905 2739 126 25 6 chr1 59652009 59652495 -183011858 + L1M1 LINE L1 4769 5263 -1585 2198 138 42 28 chr1 59652522 59652923 -183011430 + L1M1 LINE L1 5607 6024 -981 2405 98 0 0 chr1 59652923 59653220 -183011133 + AluSx SINE Alu 1 297 -15 2198 138 42 28 chr1 59653220 59653510 -183010843 + L1M1 LINE L1 6024 6309 -696 1563 159 0 39 chr1 59653510 59653768 -183010585 + AluJb SINE Alu 1 248 -64 691 175 22 4 chr1 59653811 59654044 -183010309 + GA-rich Low_complexity Low_complexity 1 237 0 891 94 35 18 chr1 59654063 59654234 -183010119 + GA-rich Low_complexity Low_complexity 3 176 0 1602 191 11 18 chr1 59654351 59654634 -183009719 + AluJo SINE Alu 1 281 -31 565 270 145 33 chr1 59654653 59654990 -183009363 + HAL1 LINE L1 418 792 -1715 2057 237 63 59 chr1 59655022 59655129 -183009224 + HAL1 LINE L1 895 1000 -1507 1925 170 0 3 chr1 59655129 59655429 -183008924 + AluJb SINE Alu 1 299 -13 2057 237 63 59 chr1 59655429 59656172 -183008181 + HAL1 LINE L1 1000 1749 -758 23 54 0 0 chr1 59656185 59656222 -183008131 + AT_rich Low_complexity Low_complexity 1 37 0 264 220 15 40 chr1 59656301 59656396 -183007957 + HsTC2 DNA Tc2 13 1822 -76 368 258 0 0 chr1 59656652 59656745 -183007608 - MIR SINE MIR -118 144 52 1849 167 109 25 chr1 59657128 59657559 -183006794 + MLT1C LTR MaLR 1 467 0 402 255 110 25 chr1 59658121 59658321 -183006032 + L1ME3A LINE L1 5948 6164 -6 1101 164 16 0 chr1 59658630 59658813 -183005540 + MER5A DNA MER1_type 4 189 0 386 291 27 20 chr1 59659384 59659536 -183004817 + MIR3 SINE MIR 13 166 -65 189 343 185 6 chr1 59659763 59659941 -183004412 - MIR SINE MIR -19 243 34 1696 162 32 19 chr1 59660560 59660875 -183003478 + L1MC1 LINE L1 6006 6324 -9 240 242 32 84 chr1 59661102 59661197 -183003156 + L2 LINE L2 3125 3214 -99 230 263 156 49 chr1 59661562 59661741 -183002612 + MIR SINE MIR 20 233 -29 444 276 39 63 chr1 59662456 59662710 -183001643 + L2 LINE L2 2838 3085 -187 309 274 151 27 chr1 59662807 59662953 -183001400 + MIR SINE MIR 42 205 -57 333 355 30 12 chr1 59663589 59663755 -183000598 - MIR SINE MIR -44 218 50 205 220 20 0 chr1 59663765 59663815 -183000538 - L2 LINE L2 -16 3256 3206 678 247 6 12 chr1 59664377 59664543 -182999810 + MIR SINE MIR 47 211 -51 336 302 9 9 chr1 59664731 59664847 -182999506 + MIR SINE MIR 20 135 -127 651 262 142 29 chr1 59664902 59665276 -182999077 - L2 LINE L2 0 3272 2857 1102 275 82 19 chr1 59665393 59666012 -182998341 + L2 LINE L2 2643 3297 -16 198 0 0 0 chr1 59667294 59667316 -182997037 + (CACCC)n Simple_repeat Simple_repeat 4 25 0 568 242 37 53 chr1 59667322 59667510 -182996843 + L2 LINE L2 3098 3282 -31 208 286 31 64 chr1 59667510 59667637 -182996716 + MIR SINE MIR 2 121 -87 218 294 46 64 chr1 59668629 59668738 -182995615 - L2 LINE L2 -189 3083 2977 496 224 119 55 chr1 59669203 59669404 -182994949 + MIR SINE MIR 46 259 -3 275 245 0 0 chr1 59669464 59669517 -182994836 + L2 LINE L2 3255 3307 -6 354 296 61 0 chr1 59669580 59669712 -182994641 + MIR SINE MIR 53 192 -70 303 247 47 0 chr1 59670026 59670111 -182994242 - MIR SINE MIR -101 161 73 182 220 99 11 chr1 59670267 59670358 -182993995 + L2 LINE L2 2815 2913 -401 4210 146 27 49 chr1 59670464 59671234 -182993119 + L1MB3 LINE L1 5422 6174 -9 2331 67 3 7 chr1 59671234 59671531 -182992822 - AluSp SINE Alu -17 296 1 24 32 0 0 chr1 59671634 59671665 -182992688 + AT_rich Low_complexity Low_complexity 1 31 0 365 299 92 65 chr1 59671665 59671882 -182992471 - L1ME LINE L1 -641 5480 5258 187 237 0 0 chr1 59672191 59672229 -182992124 - MIR SINE MIR -109 153 116 283 284 52 35 chr1 59672520 59672636 -182991717 + MIR SINE MIR 19 136 -72 390 331 54 12 chr1 59674078 59674244 -182990109 + MIR SINE MIR 1 173 -89 280 195 172 0 chr1 59674246 59674333 -182990020 + MIR SINE MIR 129 230 -32 440 244 90 45 chr1 59674572 59674728 -182989625 + MIR3 SINE MIR 23 185 -23 225 257 28 73 chr1 59675167 59675276 -182989077 + MIR SINE MIR 37 140 -68 260 125 0 0 chr1 59675385 59675425 -182988928 - MIR SINE MIR -10 252 213 269 240 120 30 chr1 59675897 59675997 -182988356 - MIR SINE MIR -82 126 18 25 65 0 0 chr1 59676330 59676376 -182987977 + AT_rich Low_complexity Low_complexity 1 46 0 207 0 0 0 chr1 59676472 59676495 -182987858 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1730 91 62 0 chr1 59676502 59676744 -182987609 - AluSq SINE Alu -56 257 1 531 251 137 0 chr1 59676913 59677088 -182987265 + MIR SINE MIR 12 210 -52 22 0 0 0 chr1 59677362 59677384 -182986969 + AT_rich Low_complexity Low_complexity 1 22 0 210 354 27 48 chr1 59677572 59677719 -182986634 - MIR SINE MIR -29 233 90 204 200 0 0 chr1 59677919 59677964 -182986389 + (CA)n Simple_repeat Simple_repeat 1 45 0 518 226 119 18 chr1 59678028 59678196 -182986157 - MIR SINE MIR -31 231 47 208 200 107 27 chr1 59678362 59678437 -182985916 - MIR3 SINE MIR -3 205 125 324 318 69 17 chr1 59679263 59679436 -182984917 + MIR SINE MIR 2 183 -79 933 149 137 18 chr1 59680019 59680187 -182984166 - MER5A DNA MER1_type 0 189 2 822 269 64 8 chr1 59680195 59680429 -182983924 + MIR SINE MIR 14 260 -2 326 230 44 89 chr1 59680469 59680604 -182983749 + MIR SINE MIR 84 212 -50 254 218 22 68 chr1 59680699 59680790 -182983563 + MIR SINE MIR 92 182 -62 2161 96 13 0 chr1 59681393 59681694 -182982659 + AluSp SINE Alu 1 305 -8 348 296 76 15 chr1 59682099 59682231 -182982122 + MIR3 SINE MIR 23 162 -46 2070 130 10 0 chr1 59682966 59683331 -182981022 + AluSx SINE Alu 1 368 0 243 0 0 0 chr1 59683334 59683361 -182980992 + (CAG)n Simple_repeat Simple_repeat 2 28 0 381 326 100 27 chr1 59683693 59683729 -182980624 + L2 LINE L2 2705 2737 -535 1348 226 0 17 chr1 59683729 59684030 -182980323 - AluJo SINE Alu -16 296 1 381 326 100 27 chr1 59684030 59684516 -182979837 + L2 LINE L2 2737 3269 -3 619 246 34 28 chr1 59684932 59685111 -182979242 + MIR SINE MIR 14 193 -69 211 336 71 26 chr1 59685166 59685279 -182979074 + L2 LINE L2 3137 3254 -18 347 223 0 0 chr1 59685829 59685917 -182978436 - MIR SINE MIR -92 116 28 190 139 70 23 chr1 59687507 59687550 -182976803 + MIR SINE MIR 62 106 -102 1912 145 3 3 chr1 59688296 59688593 -182975760 - AluJb SINE Alu -15 297 1 271 242 30 0 chr1 59688623 59688689 -182975664 - L3 LINE CR1 -54 1523 1456 402 318 123 5 chr1 59688692 59688887 -182975466 + MIR SINE MIR 24 241 -21 447 302 171 18 chr1 59688912 59689134 -182975219 + MIR SINE MIR 7 262 0 308 286 111 8 chr1 59689164 59689290 -182975063 - L3 LINE CR1 -142 1435 1297 296 283 50 17 chr1 59689567 59689687 -182974666 - MIR SINE MIR -50 212 89 998 265 53 18 chr1 59689857 59690100 -182974253 + L2 LINE L2 2764 2997 -316 1720 153 0 48 chr1 59690100 59690414 -182973939 - AluJo SINE Alu -13 299 1 998 265 53 18 chr1 59690414 59690645 -182973708 + L2 LINE L2 2997 3313 0 196 323 87 79 chr1 59690634 59690863 -182973490 - MIR SINE MIR -3 259 29 * 683 279 107 4 chr1 59691161 59691394 -182972959 + L2 LINE L2 3055 3311 -2 308 328 156 8 chr1 59691401 59691529 -182972824 - MIR3 SINE MIR -46 162 16 362 321 36 0 chr1 59691905 59692017 -182972336 + MIR SINE MIR 147 262 0 312 305 67 9 chr1 59692076 59692181 -182972172 - MIR SINE MIR -56 152 42 2195 107 3 0 chr1 59693616 59693916 -182970437 - AluSp SINE Alu -12 301 1 960 112 0 0 chr1 59693997 59694131 -182970222 - AluSg/x SINE Alu -23 289 156 463 193 0 0 chr1 59694241 59694329 -182970024 - MIR3 SINE MIR -37 171 84 418 243 184 0 chr1 59695129 59695280 -182969073 - MIR SINE MIR -62 146 20 254 335 79 63 chr1 59695469 59695723 -182968630 + L2 LINE L2 3015 3272 0 226 241 69 0 chr1 59695880 59695938 -182968415 - MIR SINE MIR -55 153 92 2657 115 56 7 chr1 59695952 59696360 -182967993 - MSTA LTR MaLR 0 428 1 540 271 8 0 chr1 59696446 59696568 -182967785 - L2 LINE L2 0 3272 3150 534 287 80 63 chr1 59697108 59697394 -182966959 - L3 LINE CR1 -1 1576 1286 186 250 0 0 chr1 59697389 59697429 -182966924 + MIR SINE MIR 74 113 -95 * 2052 81 0 0 chr1 59698024 59698307 -182966046 - AluSg SINE Alu 0 308 26 389 182 11 57 chr1 59698309 59698397 -182965956 - MIR SINE MIR -112 150 67 270 228 92 75 chr1 59698675 59698886 -182965467 + MLT1K LTR MaLR 16 296 -292 1254 230 40 37 chr1 59699139 59699465 -182964888 + LTR16C LTR ERVL 151 477 -14 1321 149 9 185 chr1 59699518 59699675 -182964678 + MLT1A1 LTR MaLR 1 184 -181 1914 106 25 0 chr1 59699675 59699976 -182964377 + AluSx SINE Alu 1 308 0 1321 149 9 185 chr1 59699976 59700191 -182964162 + MLT1A1 LTR MaLR 184 287 -78 2159 109 0 6 chr1 59700191 59700502 -182963851 + AluSx SINE Alu 1 309 -3 1321 149 9 185 chr1 59700502 59700570 -182963783 + MLT1A1 LTR MaLR 287 365 0 * 1488 138 45 167 chr1 59700570 59700641 -182963712 + MLT2D LTR ERVL 39 118 -296 1679 91 0 9 chr1 59700641 59700873 -182963480 - AluSg/x SINE Alu 0 310 81 1488 138 45 167 chr1 59700873 59701219 -182963134 + MLT2D LTR ERVL 118 404 -10 194 277 15 46 chr1 59701359 59701424 -182962929 - L2 LINE L2 -12 3260 3198 192 139 0 0 chr1 59701438 59701474 -182962879 - L2 LINE L2 0 3313 3278 298 71 0 0 chr1 59701474 59701516 -182962837 + MADE1 DNA Mariner 2 43 -37 304 234 0 16 chr1 59701555 59701619 -182962734 + MER58B DNA MER1_type 1 63 -278 1074 141 5 22 chr1 59701627 59701811 -182962542 - FRAM SINE Alu 0 176 1 694 163 28 124 chr1 59701816 59701926 -182962427 + MER58B DNA MER1_type 179 267 -2153 2502 58 3 0 chr1 59701926 59702236 -182962117 + AluY SINE Alu 1 311 0 694 163 28 124 chr1 59702236 59702303 -182962050 + MER58B DNA MER1_type 267 339 -2 758 208 19 128 chr1 59702306 59702672 -182961681 - L2 LINE L2 -54 3259 2934 355 279 107 8 chr1 59702882 59703048 -182961305 - MIR SINE MIR -55 153 9 2256 109 0 3 chr1 59703339 59703652 -182960701 + AluSx SINE Alu 1 312 0 230 278 0 0 chr1 59703806 59703860 -182960493 - L2 LINE L2 -82 3190 3137 765 299 32 5 chr1 59703944 59704161 -182960192 - MIR SINE MIR 0 262 40 576 286 0 93 chr1 59704449 59704634 -182959719 + MIR SINE MIR 27 185 -77 1691 128 10 41 chr1 59704634 59704951 -182959402 + AluSx SINE Alu 1 308 0 576 286 0 93 chr1 59704951 59705022 -182959331 + MIR SINE MIR 185 261 -1 296 315 130 19 chr1 59705357 59705519 -182958834 - MIR SINE MIR -54 208 29 258 349 28 9 chr1 59706160 59706269 -182958084 + L2 LINE L2 2950 3060 -212 234 254 211 9 chr1 59706451 59706565 -182957788 - L2 LINE L2 0 3272 3136 206 363 49 0 chr1 59706629 59706731 -182957622 - L2 LINE L2 -25 3288 3182 201 276 17 0 chr1 59707161 59707219 -182957134 + MIR SINE MIR 158 216 -46 184 310 55 62 chr1 59707546 59707691 -182956662 + MIR SINE MIR 22 165 -97 262 231 285 0 chr1 59707744 59707874 -182956479 - MER5B DNA MER1_type -11 167 1 317 237 63 68 chr1 59707927 59708117 -182956236 + L2 LINE L2 2875 3063 -209 529 288 38 38 chr1 59708295 59708457 -182955896 + L2 LINE L2 2912 3076 -237 2151 99 10 10 chr1 59708457 59708759 -182955594 + AluSq SINE Alu 1 302 -11 529 288 38 38 chr1 59708759 59708832 -182955521 + L2 LINE L2 3075 3147 -166 409 114 48 38 chr1 59708840 59708945 -182955408 + MER96B DNA MER1_type? 248 353 -64 535 265 7 14 chr1 59708975 59709122 -182955231 + L2 LINE L2 3163 3308 -5 346 283 42 54 chr1 59709896 59710062 -182954291 - MIR3 SINE MIR 0 208 45 328 326 80 23 chr1 59710080 59710255 -182954098 + MIR SINE MIR 3 187 -75 215 213 33 49 chr1 59710227 59710288 -182954065 - MIR SINE MIR 0 262 203 * 204 174 22 22 chr1 59710825 59710871 -182953482 + L2 LINE L2 3262 3307 -6 191 376 128 9 chr1 59711007 59711225 -182953128 - L2 LINE L2 -422 2892 2649 844 132 0 44 chr1 59711261 59711397 -182952956 + FLAM_C SINE Alu 3 132 -1 408 283 10 10 chr1 59711399 59711498 -182952855 - L2 LINE L2 -16 3297 3199 1105 154 5 36 chr1 59711535 59711685 -182952668 + MER5A DNA MER1_type 1 145 -44 2160 122 3 7 chr1 59711685 59711989 -182952364 + AluSx SINE Alu 3 305 -7 1105 154 5 36 chr1 59711989 59712033 -182952320 + MER5A DNA MER1_type 145 189 0 252 305 11 0 chr1 59712511 59712606 -182951747 + L1ME LINE L1 5574 5669 -452 889 306 79 38 chr1 59712762 59713045 -182951308 - L2 LINE L2 -52 3220 2950 2475 51 3 3 chr1 59713045 59713338 -182951015 + AluY SINE Alu 1 293 -18 889 306 79 38 chr1 59713338 59713913 -182950440 - L2 LINE L2 -322 2950 2293 2313 128 7 0 chr1 59714093 59714399 -182949954 - AluSx SINE Alu -4 308 1 876 259 60 16 chr1 59714445 59714696 -182949657 - MIR SINE MIR 0 262 1 265 242 202 40 chr1 59716650 59716749 -182947604 + MIR SINE MIR 31 145 -63 424 293 143 7 chr1 59716858 59717005 -182947348 + MIR3 SINE MIR 7 173 -35 2408 86 3 0 chr1 59717991 59718295 -182946058 - AluSp SINE Alu -6 307 3 484 158 273 29 chr1 59718452 59718591 -182945762 - MER5B DNA MER1_type 0 178 6 25 0 0 0 chr1 59718752 59718777 -182945576 + AT_rich Low_complexity Low_complexity 1 25 0 203 190 0 35 chr1 59719720 59719778 -182944575 + (CACG)n Simple_repeat Simple_repeat 4 59 0 256 152 0 0 chr1 59720276 59720322 -182944031 - FLAM SINE Alu 0 133 88 1374 99 18 45 chr1 59720330 59720553 -182943800 - AluJo SINE Alu -95 217 1 379 260 133 13 chr1 59720589 59720739 -182943614 - MIR SINE MIR -87 175 8 1590 127 131 0 chr1 59720885 59721145 -182943208 + AluJb SINE Alu 3 296 -6 436 204 11 11 chr1 59721145 59721225 -182943128 - FLAM_A SINE Alu -195 116 34 25 0 0 0 chr1 59721239 59721264 -182943089 + AT_rich Low_complexity Low_complexity 1 25 0 224 280 93 13 chr1 59721642 59721717 -182942636 - MIR SINE MIR -96 166 86 404 352 89 0 chr1 59721775 59721970 -182942383 + MIR SINE MIR 3 213 -49 1473 157 0 0 chr1 59722787 59723016 -182941337 + AluJb SINE Alu 75 303 -9 445 217 155 39 chr1 59723036 59723165 -182941188 + MIR SINE MIR 26 169 -93 822 292 15 0 chr1 59723728 59723930 -182940423 + MIR SINE MIR 46 250 -12 294 258 151 101 chr1 59724109 59724466 -182939887 - L2 LINE L2 -19 3253 2879 * 911 281 15 23 chr1 59724455 59724718 -182939635 - MIR SINE MIR 0 262 2 185 234 188 19 chr1 59724736 59724890 -182939463 - L2 LINE L2 -428 2886 2707 389 265 218 0 chr1 59725118 59725265 -182939088 + MIR SINE MIR 45 223 -39 210 269 0 0 chr1 59726115 59726167 -182938186 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 391 326 67 10 chr1 59726360 59726553 -182937800 - L2 LINE L2 -192 3080 2877 393 263 77 67 chr1 59726884 59727118 -182937235 - MIR SINE MIR -15 247 19 287 381 27 0 chr1 59727233 59727380 -182936973 - MIR3 SINE MIR -37 171 21 752 157 9 0 chr1 59727399 59727514 -182936839 + FLAM_C SINE Alu 10 125 -18 31 0 0 0 chr1 59727514 59727545 -182936808 + AT_rich Low_complexity Low_complexity 1 31 0 2268 159 9 0 chr1 59727727 59728061 -182936292 - MER1B DNA MER1_type 0 337 1 981 215 139 0 chr1 59728081 59728304 -182936049 - MIR SINE MIR -1 261 8 209 309 0 24 chr1 59728841 59728925 -182935428 - L2 LINE L2 -50 3263 3182 241 285 108 88 chr1 59728997 59729246 -182935107 + L2 LINE L2 2924 3177 -95 188 328 74 33 chr1 59729453 59729575 -182934778 + L2 LINE L2 3089 3215 -57 284 247 39 13 chr1 59729696 59729773 -182934580 - MIR SINE MIR -96 166 88 468 0 0 0 chr1 59729851 59729903 -182934450 + (TG)n Simple_repeat Simple_repeat 1 52 0 266 287 74 0 chr1 59730277 59730385 -182933968 - MIR3 SINE MIR -15 193 78 2386 93 3 0 chr1 59731158 59731460 -182932893 - AluSq SINE Alu -10 303 1 282 282 190 31 chr1 59731518 59731713 -182932640 - MLT1I LTR MaLR -26 383 158 209 318 159 85 chr1 59732983 59733373 -182930980 - L2 LINE L2 -1 3271 2853 1529 167 65 15 chr1 59733965 59734228 -182930125 - AluJo SINE Alu -36 276 1 21 36 0 0 chr1 59734241 59734269 -182930084 + AT_rich Low_complexity Low_complexity 1 28 0 237 316 53 8 chr1 59734282 59734415 -182929938 + L2 LINE L2 2756 2894 -420 254 294 82 0 chr1 59734684 59734769 -182929584 - MIR SINE MIR -100 162 71 520 185 77 54 chr1 59734822 59734952 -182929401 + FLAM_A SINE Alu 1 133 0 935 134 0 40 chr1 59734960 59735109 -182929244 + FLAM_C SINE Alu 1 143 0 2322 87 7 17 chr1 59735171 59735470 -182928883 + AluSx SINE Alu 1 296 -16 2283 99 18 65 chr1 59735750 59735931 -182928422 + THE1B LTR MaLR 1 156 -208 2464 82 0 0 chr1 59735931 59736223 -182928130 + AluSq SINE Alu 1 292 -21 2283 99 18 65 chr1 59736223 59736423 -182927930 + THE1B LTR MaLR 156 364 0 362 371 75 5 chr1 59736651 59736837 -182927516 - MIR SINE MIR -18 244 46 2745 195 214 70 chr1 59737420 59737462 -182926891 + L1MC4 LINE L1 6442 6477 -1331 1997 164 3 3 chr1 59737462 59737774 -182926579 + AluJb SINE Alu 1 312 0 2745 195 214 70 chr1 59737774 59737859 -182926494 + L1MC4 LINE L1 6477 6548 -1260 725 33 58 0 chr1 59737859 59737980 -182926373 + (TC)n Simple_repeat Simple_repeat 1 128 0 2745 195 214 70 chr1 59737980 59738610 -182925743 + L1MC4 LINE L1 6548 7086 -722 2137 130 0 7 chr1 59738610 59738910 -182925443 + AluSq SINE Alu 1 298 -15 2745 195 214 70 chr1 59738910 59739352 -182925001 + L1MC4 LINE L1 7086 7697 -111 978 61 0 85 chr1 59739400 59739441 -182924912 + L1MB3 LINE L1 5791 5834 -349 1975 151 6 10 chr1 59739441 59739752 -182924601 + AluSx SINE Alu 1 310 -2 2386 98 0 10 chr1 59739759 59740064 -182924289 + AluSx SINE Alu 1 302 -10 978 61 0 85 chr1 59740064 59740178 -182924175 + L1MB3 LINE L1 5840 5940 -243 1106 73 0 30 chr1 59740178 59740332 -182924021 + L1MB3 LINE L1 6024 6183 0 234 0 0 0 chr1 59740357 59740383 -182923970 + (A)n Simple_repeat Simple_repeat 1 26 0 1798 157 7 14 chr1 59740679 59740996 -182923357 - AluJb SINE Alu 0 315 1 1972 157 0 25 chr1 59741008 59741327 -182923026 - AluSx SINE Alu -1 311 1 1922 166 0 7 chr1 59741374 59741682 -182922671 + AluJo SINE Alu 5 310 -2 2219 96 41 3 chr1 59741788 59742080 -182922273 - AluSx SINE Alu -9 303 1 231 244 47 35 chr1 59742099 59742185 -182922168 + MER113 DNA MER1_type? 433 519 -2 306 117 0 0 chr1 59742757 59742810 -182921543 - AluJb SINE Alu -171 131 86 228 338 130 72 chr1 59742996 59743327 -182921026 - L2 LINE L2 -7 3265 2916 700 208 19 26 chr1 59743550 59743704 -182920649 - MER58B DNA MER1_type -2 339 187 2235 116 10 0 chr1 59744110 59744403 -182919950 + AluSx SINE Alu 1 296 -16 242 307 158 0 chr1 59744643 59744757 -182919596 + MIR SINE MIR 60 191 -71 4012 152 65 13 chr1 59744784 59745481 -182918872 + MER44D DNA MER2_type 1 605 0 193 277 135 95 chr1 59745917 59746065 -182918288 - L2 LINE L2 -4 3268 3115 2857 189 54 55 chr1 59746148 59746428 -182917925 - L1M4 LINE L1 -692 5980 5701 915 150 0 0 chr1 59746428 59746561 -182917792 - FLAM_C SINE Alu 0 133 1 2857 189 54 55 chr1 59746561 59747188 -182917165 - L1M4 LINE L1 -971 5701 5082 982 215 0 0 chr1 59747188 59747351 -182917002 + FRAM SINE Alu 1 157 -19 1456 199 55 20 chr1 59747351 59747754 -182916599 - L1M4 LINE L1 -1555 5089 4673 * 2674 222 44 16 chr1 59747750 59748501 -182915852 - L1M4 LINE L1 -4729 1917 1146 3541 204 30 52 chr1 59748516 59749357 -182914996 - L1M4 LINE L1 -5720 822 1 823 194 49 45 chr1 59749379 59749558 -182914795 - L1M4 LINE L1 -3570 2576 2394 2043 135 10 32 chr1 59749558 59749870 -182914483 + AluJb SINE Alu 1 305 -7 823 194 49 45 chr1 59749870 59749937 -182914416 - L1M4 LINE L1 -3752 2394 2329 700 276 43 23 chr1 59750332 59750589 -182913764 - MIR SINE MIR 0 262 1 194 351 39 0 chr1 59750589 59750658 -182913695 - MIR SINE MIR -115 93 19 1844 161 31 9 chr1 59750800 59751122 -182913231 - MER7A DNA MER2_type -19 327 1 335 328 52 8 chr1 59751726 59751860 -182912493 + MIR SINE MIR 37 176 -86 355 260 73 16 chr1 59752050 59752173 -182912180 - MIR3 SINE MIR -4 204 75 34 0 0 0 chr1 59752654 59752688 -182911665 + AT_rich Low_complexity Low_complexity 1 34 0 270 294 28 28 chr1 59753031 59753140 -182911213 + L1ME4a LINE L1 5505 5613 -508 * 618 251 166 4 chr1 59753139 59753551 -182910802 + L1MC4a LINE L1 5338 5839 -733 21 36 0 0 chr1 59753617 59753645 -182910708 + AT_rich Low_complexity Low_complexity 1 28 0 522 133 167 8 chr1 59753811 59753931 -182910422 - MER58C DNA MER1_type 0 215 77 1753 166 10 24 chr1 59753939 59754234 -182910119 + AluJo SINE Alu 11 301 -11 270 298 72 32 chr1 59754309 59754588 -182909765 + L1ME4a LINE L1 5645 5934 -187 1370 220 232 25 chr1 59754608 59755126 -182909227 + HAL1 LINE L1 1 625 -1882 391 162 117 18 chr1 59755123 59755234 -182909119 + HAL1 LINE L1 1234 1355 -1152 * 649 99 0 40 chr1 59755235 59755336 -182909017 + FLAM_C SINE Alu 32 128 -15 903 116 16 0 chr1 59755586 59755707 -182908646 + AluJb SINE Alu 3 125 -187 1734 147 83 0 chr1 59755766 59756032 -182908321 - AluJo SINE Alu -24 288 1 191 337 61 0 chr1 59756972 59757070 -182907283 + L2 LINE L2 2925 3028 -244 259 219 209 19 chr1 59757196 59757301 -182907052 + L2 LINE L2 3146 3270 -2 266 256 39 0 chr1 59757660 59757738 -182906615 + MIR3 SINE MIR 117 197 -11 388 268 242 5 chr1 59757748 59757942 -182906411 - MIR SINE MIR -6 256 17 663 238 163 27 chr1 59758497 59758984 -182905369 - L2 LINE L2 -2 3270 2703 2360 79 0 3 chr1 59759403 59759697 -182904656 + AluSg SINE Alu 1 291 -19 264 231 143 33 chr1 59760229 59760320 -182904033 - MIR SINE MIR -70 192 92 299 267 66 40 chr1 59760474 59760640 -182903713 + MIR3 SINE MIR 4 168 -61 1777 153 68 9 chr1 59761071 59761410 -182902943 - MLT1A1 LTR MaLR -5 360 2 319 325 62 5 chr1 59761415 59761624 -182902729 + L2 LINE L2 2287 2507 -807 935 127 0 8 chr1 59761887 59762021 -182902332 - FLAM_C SINE Alu 0 133 1 2264 94 7 0 chr1 59762091 59762399 -182901954 - AluSq SINE Alu -3 310 1 347 352 20 44 chr1 59762516 59762766 -182901587 - L1ME LINE L1 -370 5751 5508 278 300 43 99 chr1 59763016 59763153 -182901200 + L2 LINE L2 3026 3144 -128 1061 207 14 23 chr1 59763153 59763370 -182900983 - MER20 DNA MER1_type -4 215 1 278 300 43 99 chr1 59763370 59763485 -182900868 + L2 LINE L2 3144 3264 -8 346 224 20 0 chr1 59763675 59763762 -182900591 + MIR SINE MIR 76 147 -61 304 305 36 36 chr1 59764251 59764418 -182899935 + L2 LINE L2 2916 3082 -190 1998 110 7 0 chr1 59764613 59764921 -182899432 + AluSx SINE Alu 1 310 0 215 272 0 0 chr1 59765357 59765430 -182898923 + MIR SINE MIR 77 150 -58 234 0 0 0 chr1 59765687 59765713 -182898640 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1497 188 0 29 chr1 59765721 59765993 -182898360 - AluJo SINE Alu -47 265 2 262 339 34 17 chr1 59765994 59766112 -182898241 + L2 LINE L2 2971 3090 -182 216 0 49 49 chr1 59766965 59767006 -182897347 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 348 319 166 0 chr1 59767060 59767223 -182897130 - MIR SINE MIR -17 245 56 249 317 208 0 chr1 59767332 59767433 -182896920 + MER91A DNA MER1_type 1 122 -74 442 337 46 65 chr1 59768379 59768812 -182895541 + L2 LINE L2 2831 3255 -17 192 77 0 0 chr1 59768815 59768841 -182895512 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 455 226 148 88 chr1 59768953 59769033 -182895320 + MER102b DNA MER1_type 2 76 -1352 2269 98 7 0 chr1 59769033 59769339 -182895014 + AluSp SINE Alu 1 308 -5 455 226 148 88 chr1 59769339 59769385 -182894968 + MER102b DNA MER1_type 76 118 -1310 2024 108 0 38 chr1 59769385 59769701 -182894652 + AluSx SINE Alu 1 304 -8 455 226 148 88 chr1 59769701 59769891 -182894462 + MER102b DNA MER1_type 118 338 -3 479 284 33 1 chr1 59770119 59770375 -182893978 + LTR16A LTR ERVL 108 399 -51 580 211 46 26 chr1 59770551 59770703 -182893650 + MER103 DNA DNA 1 155 -11 383 349 132 22 chr1 59770786 59771330 -182893023 - L2 LINE L2 -554 2760 2157 34 24 0 0 chr1 59771620 59771661 -182892692 + AT_rich Low_complexity Low_complexity 1 41 0 208 254 0 17 chr1 59772165 59772224 -182892129 - MER91 DNA MER1_type -3 187 130 1628 145 46 11 chr1 59772260 59772542 -182891811 + AluJb SINE Alu 1 292 -20 194 139 28 0 chr1 59773376 59773412 -182890941 + MIR SINE MIR 112 148 -114 212 290 43 0 chr1 59773902 59773971 -182890382 + L2 LINE L2 2251 2322 -992 187 379 75 44 chr1 59774121 59774506 -182889847 + L2 LINE L2 2872 3268 -4 1827 146 23 10 chr1 59774532 59774840 -182889513 + AluSx SINE Alu 1 312 0 1014 74 28 17 chr1 59774860 59775036 -182889317 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2046 132 3 0 chr1 59775037 59775341 -182889012 + AluSq SINE Alu 1 305 -8 672 178 123 0 chr1 59775803 59775949 -182888404 - MIR SINE MIR -20 242 79 308 273 169 16 chr1 59776376 59776559 -182887794 + MIR SINE MIR 46 256 -6 228 157 0 114 chr1 59776597 59776667 -182887686 - MIR SINE MIR -129 79 18 309 247 140 21 chr1 59776841 59776934 -182887419 + L2 LINE L2 2955 3058 -214 2446 141 13 51 chr1 59777073 59777164 -182887189 + L1MB3 LINE L1 5746 5839 -344 2278 104 0 0 chr1 59777164 59777471 -182886882 + AluSx SINE Alu 6 312 0 2446 141 13 51 chr1 59777471 59777832 -182886521 + L1MB3 LINE L1 5839 6181 -2 839 250 31 13 chr1 59777832 59778079 -182886274 + MIR SINE MIR 13 262 0 267 53 0 0 chr1 59778159 59778197 -182886156 + L2 LINE L2 3014 3051 -221 553 290 0 0 chr1 59778890 59779021 -182885332 - MIR3 SINE MIR -27 181 51 512 289 88 40 chr1 59779078 59779289 -182885064 - MIR SINE MIR -23 239 15 789 216 10 36 chr1 59779289 59779368 -182884985 + MER5A DNA MER1_type 1 81 -108 1932 122 24 11 chr1 59779368 59779655 -182884698 + AluSx SINE Alu 1 291 -21 789 216 10 36 chr1 59779655 59779769 -182884584 + MER5A DNA MER1_type 81 189 0 512 289 88 40 chr1 59779769 59779785 -182884568 - MIR SINE MIR -247 15 1 757 243 30 80 chr1 59779794 59779960 -182884393 + MIR SINE MIR 2 152 -110 2160 99 0 0 chr1 59779960 59780252 -182884101 + AluSx SINE Alu 12 303 -9 757 243 30 80 chr1 59780252 59780348 -182884005 + MIR SINE MIR 152 251 -11 207 356 55 25 chr1 59780521 59780684 -182883669 + MIR SINE MIR 59 226 -36 * 226 305 0 0 chr1 59780643 59780702 -182883651 - MIR SINE MIR 0 262 204 1171 110 6 0 chr1 59780706 59780869 -182883484 - AluSc SINE Alu -53 256 93 575 176 0 0 chr1 59780989 59781080 -182883273 - AluS SINE Alu -220 92 2 643 259 43 5 chr1 59781090 59781275 -182883078 - MIR SINE MIR -67 195 4 197 229 21 0 chr1 59782062 59782110 -182882243 + MER5B DNA MER1_type 2 50 -128 180 0 0 0 chr1 59782253 59782273 -182882080 + (GA)n Simple_repeat Simple_repeat 1 20 0 306 0 0 0 chr1 59782293 59782327 -182882026 + (CA)n Simple_repeat Simple_repeat 2 35 0 2000 93 46 0 chr1 59782327 59782607 -182881746 - AluSx SINE Alu -19 293 1 2421 59 7 0 chr1 59783389 59783692 -182880661 + AluY SINE Alu 2 306 -5 1605 158 54 4 chr1 59784124 59784403 -182879950 - AluJo SINE Alu -19 293 1 1208 237 116 24 chr1 59784674 59785090 -182879263 - MLT1C LTR MaLR -8 441 1 338 329 57 14 chr1 59785460 59785600 -182878753 - MIR SINE MIR -70 192 47 792 242 60 117 chr1 59785711 59785758 -182878595 + L1MC4a LINE L1 5348 5396 -725 1434 155 126 11 chr1 59785758 59785898 -182878455 + AluJb SINE Alu 1 124 -178 1770 106 0 0 chr1 59785898 59786134 -182878219 - AluSx SINE Alu -17 295 60 1434 155 126 11 chr1 59786134 59786264 -182878089 + AluJb SINE Alu 124 302 0 792 242 60 117 chr1 59786264 59786756 -182877597 + L1MC4a LINE L1 5396 5450 -671 2136 95 0 3 chr1 59786756 59787085 -182877268 + AluSx SINE Alu 1 328 0 792 242 60 117 chr1 59787085 59787212 -182877141 + L1MC4a LINE L1 5450 5583 -538 220 189 19 38 chr1 59787476 59787529 -182876824 + L2 LINE L2 3258 3309 -4 501 218 31 0 chr1 59788161 59788287 -182876066 - MIR SINE MIR -63 145 34 195 278 72 0 chr1 59788412 59788509 -182875844 + MIR3 SINE MIR 8 111 -97 2060 119 0 28 chr1 59788810 59789129 -182875224 + AluSx SINE Alu 1 310 -2 387 267 86 9 chr1 59789336 59789452 -182874901 - MIR SINE MIR -63 145 21 314 236 0 28 chr1 59789504 59789576 -182874777 + L3 LINE CR1 588 657 -920 368 299 39 19 chr1 59789771 59789925 -182874428 + MIR SINE MIR 11 167 -95 325 214 0 60 chr1 59789963 59790047 -182874306 + L2 LINE L2 3235 3313 0 738 288 130 36 chr1 59790052 59790689 -182873664 - L2 LINE L2 -11 3261 2569 440 225 112 35 chr1 59790817 59790944 -182873409 - MIR SINE MIR -61 201 56 774 130 8 53 chr1 59790944 59791075 -182873278 - FLAM_C SINE Alu -8 125 1 440 225 112 35 chr1 59791075 59791116 -182873237 - MIR SINE MIR -206 56 20 259 254 0 28 chr1 59791198 59791269 -182873084 - MIR SINE MIR -103 105 37 2166 105 0 19 chr1 59791667 59791982 -182872371 + AluSq SINE Alu 5 313 0 252 369 0 0 chr1 59792032 59792116 -182872237 - L2 LINE L2 0 3272 3189 677 241 49 0 chr1 59792134 59792296 -182872057 - MIR SINE MIR -71 191 22 598 223 122 0 chr1 59792898 59793037 -182871316 + MER96 DNA MER1_type? 1 156 -19 186 297 14 14 chr1 59793659 59793733 -182870620 - MIR SINE MIR -93 115 42 359 287 47 23 chr1 59793748 59793877 -182870476 + MIR SINE MIR 21 152 -56 2402 238 56 20 chr1 59795439 59796148 -182868205 - L1ME3A LINE L1 -23 6147 5413 465 262 16 55 chr1 59796164 59796347 -182868006 + L2 LINE L2 3106 3281 -32 180 333 13 39 chr1 59796534 59796612 -182867741 + MIR SINE MIR 33 108 -154 238 163 0 0 chr1 59796636 59796679 -182867674 + AluJb SINE Alu 1 43 -258 2023 114 0 0 chr1 59796681 59797014 -182867339 - AluSx SINE Alu 0 333 1 1689 116 7 46 chr1 59797014 59797124 -182867229 + AluJb SINE Alu 24 137 -175 2140 113 17 0 chr1 59797124 59797424 -182866929 + AluSg SINE Alu 1 305 -5 1689 116 7 46 chr1 59797424 59797436 -182866917 + AluJb SINE Alu 137 148 -164 1822 130 55 3 chr1 59797436 59797729 -182866624 + AluSx SINE Alu 1 308 -4 1689 116 7 46 chr1 59797729 59797889 -182866464 + AluJb SINE Alu 148 296 -16 910 114 138 6 chr1 59797961 59798128 -182866225 - MER53 DNA DNA 0 189 1 192 77 0 0 chr1 59798155 59798181 -182866172 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1864 111 0 114 chr1 59798195 59798528 -182865825 + AluJb SINE Alu 1 295 -7 258 296 36 107 chr1 59798766 59798854 -182865499 - MIR SINE MIR -21 241 148 1991 141 7 0 chr1 59798854 59799144 -182865209 + AluSx SINE Alu 1 292 -20 258 296 36 107 chr1 59799144 59799308 -182865045 - MIR SINE MIR -114 148 7 528 286 7 14 chr1 59799517 59799664 -182864689 - L2 LINE L2 0 3272 3127 241 228 0 18 chr1 59800890 59800947 -182863406 + C-rich Low_complexity Low_complexity 3 58 0 451 288 15 42 chr1 59801110 59801278 -182863075 + MIR3 SINE MIR 9 171 -65 193 200 261 0 chr1 59801359 59801424 -182862929 - MIR SINE MIR -109 153 72 296 341 53 35 chr1 59802418 59802702 -182861651 - L3 LINE CR1 -212 1365 1077 2182 73 0 42 chr1 59802712 59803025 -182861328 - AluY SINE Alu -11 300 1 282 318 0 16 chr1 59803418 59803544 -182860809 + G-rich Low_complexity Low_complexity 3 126 0 1319 151 0 5 chr1 59803739 59803944 -182860409 - AluJo SINE Alu -108 204 1 1972 147 0 13 chr1 59804106 59804412 -182859941 - AluSx SINE Alu -10 302 1 945 174 12 0 chr1 59804428 59804595 -182859758 + AluJo SINE Alu 122 290 -22 209 240 20 0 chr1 59804629 59804679 -182859674 + L2 LINE L2 3222 3272 0 254 290 86 74 chr1 59804929 59805091 -182859262 - MIR SINE MIR -79 183 20 566 297 58 5 chr1 59805803 59806020 -182858333 + MLT1H LTR MaLR 1 270 -279 362 185 136 0 chr1 59806091 59806172 -182858181 + MLT1H LTR MaLR 392 483 -72 1277 147 3 122 chr1 59806200 59806375 -182857978 - AluJo SINE Alu -50 262 132 2132 114 0 3 chr1 59806375 59806672 -182857681 + AluSq SINE Alu 1 296 -17 1277 147 3 122 chr1 59806672 59806782 -182857571 - AluJo SINE Alu -180 132 11 321 164 0 0 chr1 59806802 59806857 -182857496 + MLT1H LTR MaLR 540 594 -1 331 325 50 0 chr1 59806865 59806985 -182857368 - L2 LINE L2 -222 3091 2966 422 155 14 0 chr1 59807021 59807092 -182857261 + L2 LINE L2 3236 3307 -6 2224 140 219 58 chr1 59807095 59807385 -182856968 + LTR29 LTR ERV1 1 243 -379 1744 161 0 40 chr1 59807385 59807709 -182856644 + AluJb SINE Alu 2 312 0 2224 140 219 58 chr1 59807709 59807952 -182856401 + LTR29 LTR ERV1 243 620 -2 472 279 29 0 chr1 59808051 59808187 -182856166 - L2 LINE L2 -343 2971 2832 730 234 31 40 chr1 59808583 59808805 -182855548 - L2 LINE L2 0 3313 3094 646 275 83 24 chr1 59809035 59809096 -182855257 + L2 LINE L2 2636 2692 -621 2053 117 10 19 chr1 59809096 59809405 -182854948 - AluSq SINE Alu -7 306 1 646 275 83 24 chr1 59809405 59809755 -182854598 + L2 LINE L2 2692 3061 -252 733 214 137 5 chr1 59810220 59810426 -182853927 + L1MC4 LINE L1 6639 6723 -1085 183 42 0 0 chr1 59810426 59810450 -182853903 + (T)n Simple_repeat Simple_repeat 1 24 0 2145 128 0 3 chr1 59810462 59810760 -182853593 + AluSx SINE Alu 1 297 -15 501 238 0 0 chr1 59810799 59810921 -182853432 + L1MC4 LINE L1 6943 7064 -978 216 0 0 0 chr1 59810925 59810949 -182853404 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2396 216 84 3 chr1 59810949 59811570 -182852783 + L1MC4 LINE L1 7238 7908 -134 2199 127 0 3 chr1 59811583 59811882 -182852471 - AluSx SINE Alu -14 298 1 1915 162 0 10 chr1 59811897 59812200 -182852153 - AluJb SINE Alu -12 300 1 204 226 24 119 chr1 59812219 59812240 -182852113 - L2 LINE L2 -6 3307 3286 2215 113 0 0 chr1 59812240 59812574 -182851779 + AluSq SINE Alu 1 334 0 204 226 24 119 chr1 59812574 59812635 -182851718 - L2 LINE L2 -27 3286 3232 1955 152 3 10 chr1 59812636 59812925 -182851428 + AluSx SINE Alu 1 287 -25 33 0 0 0 chr1 59812926 59812959 -182851394 + AT_rich Low_complexity Low_complexity 1 33 0 1968 202 23 107 chr1 59812967 59813305 -182851048 + L1ME3 LINE L1 5203 5568 -594 2480 90 0 3 chr1 59813305 59813616 -182850737 - AluSp SINE Alu -3 310 1 1968 202 23 107 chr1 59813616 59813714 -182850639 + L1ME3 LINE L1 5568 5673 -489 1492 186 89 49 chr1 59813714 59814063 -182850290 + MLT1A1 LTR MaLR 1 363 -2 1968 202 23 107 chr1 59814063 59814395 -182849958 + L1ME3 LINE L1 5673 5907 -255 2389 92 7 0 chr1 59814395 59814698 -182849655 + AluSp SINE Alu 1 305 -8 1219 133 0 0 chr1 59814698 59814871 -182849482 + AluSg/x SINE Alu 132 304 -6 1376 88 0 6 chr1 59814873 59815070 -182849283 + AluSp SINE Alu 122 317 0 752 210 59 71 chr1 59815077 59815167 -182849186 + L1ME3 LINE L1 5899 5989 -173 744 176 16 172 chr1 59815167 59815423 -182848930 + MER20 DNA MER1_type 1 216 -3 752 210 59 71 chr1 59815423 59815570 -182848783 + L1ME3 LINE L1 5989 6133 -29 1484 182 24 1 chr1 59815651 59815971 -182848382 + L1 LINE L1 4625 4956 -1190 960 105 20 203 chr1 59815971 59816187 -182848166 + L1MB3 LINE L1 5921 6175 4 1824 139 77 0 chr1 59816187 59816461 -182847892 + AluSx SINE Alu 1 295 -17 960 105 20 203 chr1 59816461 59816472 -182847881 + L1MB3 LINE L1 6175 6186 15 1705 193 10 10 chr1 59816472 59816778 -182847575 + AluJo SINE Alu 1 306 -6 960 105 20 203 chr1 59816778 59816798 -182847555 + L1MB3 LINE L1 6186 6208 37 1995 149 3 10 chr1 59816798 59817099 -182847254 + AluJb SINE Alu 1 299 -13 960 105 20 203 chr1 59817099 59817110 -182847243 + L1MB3 LINE L1 6208 6121 -50 764 204 8 0 chr1 59817110 59817242 -182847111 - FLAM_C SINE Alu 0 133 1 960 105 20 203 chr1 59817242 59817286 -182847067 + L1MB3 LINE L1 6120 6170 -1 2136 117 40 0 chr1 59817309 59817607 -182846746 - AluSx SINE Alu -2 310 1 2196 112 7 0 chr1 59817619 59817915 -182846438 - AluSx SINE Alu -14 298 1 2192 131 0 0 chr1 59817959 59818249 -182846104 + AluSx SINE Alu 9 298 -14 1698 155 0 44 chr1 59818460 59818777 -182845576 + AluJo SINE Alu 1 304 0 2247 120 0 0 chr1 59818828 59819127 -182845226 + AluSx SINE Alu 1 299 -13 2445 86 0 3 chr1 59819453 59819754 -182844599 - AluSq SINE Alu -13 300 1 288 293 12 0 chr1 59819755 59819837 -182844516 - MIR SINE MIR -114 148 66 275 244 78 102 chr1 59821229 59821512 -182842841 + L2 LINE L2 2634 2909 -405 299 321 0 0 chr1 59821645 59821729 -182842624 + L2 LINE L2 3158 3241 -31 279 0 0 0 chr1 59822302 59822333 -182842020 + (CA)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr1 59822332 59822362 -182841991 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 490 324 107 46 chr1 59822454 59822962 -182841391 + L2 LINE L2 2721 3259 -13 2094 148 0 3 chr1 59823125 59823423 -182840930 + AluJo SINE Alu 1 297 -15 304 311 6 0 chr1 59823497 59823678 -182840675 + GA-rich Low_complexity Low_complexity 1 182 0 264 277 12 0 chr1 59823699 59823782 -182840571 + (TTCA)n Simple_repeat Simple_repeat 2 85 0 191 200 31 46 chr1 59823809 59823874 -182840479 + L2 LINE L2 2199 2262 -1052 * 399 285 129 26 chr1 59823846 59824039 -182840314 + MIR SINE MIR 47 259 -3 350 267 78 0 chr1 59824232 59824348 -182840005 + MER69A DNA AcHobo 1 125 -52 512 350 69 17 chr1 59825115 59825475 -182838878 + L2 LINE L2 2327 2705 -609 2255 94 3 3 chr1 59825484 59825825 -182838528 + AluSq SINE Alu 1 341 0 1472 123 0 0 chr1 59825834 59825979 -182838374 + L1MB5 LINE L1 4764 4907 -1239 870 167 0 0 chr1 59825979 59826111 -182838242 + FLAM_C SINE Alu 2 133 0 1472 123 0 0 chr1 59826111 59826231 -182838122 + L1MB5 LINE L1 4907 5025 -1121 2115 136 10 3 chr1 59826231 59826402 -182837951 - AluSx SINE Alu -8 304 129 2326 110 0 0 chr1 59826402 59826701 -182837652 - AluSq SINE Alu -14 299 1 2115 136 10 3 chr1 59826701 59826831 -182837522 - AluSx SINE Alu -183 129 1 1472 123 0 0 chr1 59826831 59827063 -182837290 + L1MB5 LINE L1 5025 5190 -956 1837 175 72 28 chr1 59827083 59827512 -182836841 + L1MB5 LINE L1 5721 6168 -6 846 270 17 35 chr1 59827528 59827844 -182836509 + L1MDb LINE L1 50 340 -6200 361 259 0 0 chr1 59828025 59828110 -182836243 + L1MDb LINE L1 828 912 -5631 2033 152 7 3 chr1 59828205 59828515 -182835838 + AluJb SINE Alu 1 311 -1 1816 218 175 28 chr1 59828520 59828585 -182835768 + L1MDb LINE L1 937 991 -5549 2152 114 7 23 chr1 59828585 59828884 -182835469 + AluSx SINE Alu 8 301 -11 1816 218 175 28 chr1 59828884 59829049 -182835304 + L1MDb LINE L1 991 1131 -5409 2077 146 0 23 chr1 59829049 59829357 -182834996 + AluSx SINE Alu 1 301 -11 708 153 63 0 chr1 59829364 59829475 -182834878 + FLAM_C SINE Alu 1 118 -15 1816 218 175 28 chr1 59829475 59829516 -182834837 + L1MDb LINE L1 1136 1170 -5370 1980 146 0 0 chr1 59829516 59829790 -182834563 + AluSx SINE Alu 1 274 -38 1816 218 175 28 chr1 59829790 59830386 -182833967 + L1MDb LINE L1 1170 1952 -4588 276 296 50 5 chr1 59830480 59830572 -182833781 - MER5A DNA MER1_type -45 133 39 597 314 79 72 chr1 59830690 59831146 -182833207 + L2 LINE L2 2813 3271 -1 180 0 0 0 chr1 59831148 59831168 -182833185 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 1996 159 3 0 chr1 59831244 59831540 -182832813 + AluJb SINE Alu 1 297 -15 267 295 319 6 chr1 59831777 59831950 -182832403 + MIR SINE MIR 27 252 -10 216 216 23 0 chr1 59832675 59832730 -182831623 - MIR SINE MIR -74 134 77 1728 164 7 30 chr1 59833340 59833645 -182830708 + AluJb SINE Alu 1 298 -14 1114 193 95 20 chr1 59834084 59834379 -182829974 - L1ME3A LINE L1 0 6170 5854 528 246 29 23 chr1 59834393 59834568 -182829785 - L1ME LINE L1 -5889 181 6 935 198 18 40 chr1 59834696 59834923 -182829430 - AluJo SINE Alu -10 302 81 2142 135 10 16 chr1 59834939 59835251 -182829102 - AluJb SINE Alu 0 312 3 635 175 63 8 chr1 59835346 59835472 -182828881 + FLAM_C SINE Alu 1 133 0 2011 135 7 0 chr1 59835509 59835790 -182828563 + AluSx SINE Alu 6 288 -24 267 313 93 0 chr1 59835805 59835955 -182828398 - L1MEd LINE L1 -4688 1696 1533 706 174 0 0 chr1 59836041 59836150 -182828203 + FLAM_C SINE Alu 2 110 -33 35 0 0 0 chr1 59836152 59836187 -182828166 + AT_rich Low_complexity Low_complexity 1 35 0 2177 112 0 14 chr1 59836365 59836661 -182827692 - AluSx SINE Alu -20 292 1 1630 169 0 0 chr1 59836669 59836917 -182827436 - AluSx SINE Alu -20 292 45 3217 111 62 19 chr1 59836917 59837064 -182827289 - MER9 LTR ERVK -4 507 368 6812 84 35 43 chr1 59837064 59838041 -182826312 + LTR5 LTR ERVK 1 969 0 3217 111 62 19 chr1 59838041 59838379 -182825974 - MER9 LTR ERVK -143 368 1 1590 69 14 5 chr1 59838408 59838625 -182825728 - HERVK9 LTR ERVK -63 5853 5635 3402 91 7 7 chr1 59838711 59839591 -182824762 - HERVK9 LTR ERVK -275 5641 4745 6609 59 1 0 chr1 59839624 59840471 -182823882 - HERVK9 LTR ERVK -1976 3940 3093 * 22589 63 0 7 chr1 59840470 59843386 -182820967 - HERVK9 LTR ERVK -3018 2898 1 3368 113 47 4 chr1 59843386 59843875 -182820478 - MER9 LTR ERVK 0 511 2 345 136 0 15 chr1 59843875 59843949 -182820404 - AluSx SINE Alu -245 55 9 2520 84 0 0 chr1 59843963 59844273 -182820080 + AluY SINE Alu 1 310 -1 1682 188 17 0 chr1 59844282 59844574 -182819779 + AluJo SINE Alu 1 297 -15 2337 108 0 0 chr1 59844576 59844883 -182819470 + AluY SINE Alu 1 307 -4 452 361 21 21 chr1 59844889 59845080 -182819273 - L1MEd LINE L1 -5303 1069 879 186 43 0 0 chr1 59845080 59845103 -182819250 + (T)n Simple_repeat Simple_repeat 1 23 0 373 259 78 0 chr1 59845554 59845670 -182818683 - MER69A DNA AcHobo -52 125 1 399 285 129 26 chr1 59845863 59846056 -182818297 - MIR SINE MIR -3 259 47 191 200 31 46 chr1 59846028 59846093 -182818260 - L2 LINE L2 -1052 2262 2199 * 264 277 12 0 chr1 59846120 59846203 -182818150 + (TGAA)n Simple_repeat Simple_repeat 2 85 0 304 311 6 0 chr1 59846224 59846405 -182817948 + CT-rich Low_complexity Low_complexity 1 182 0 2068 130 3 0 chr1 59846858 59847143 -182817210 - AluSx SINE Alu -26 286 1 269 167 0 141 chr1 59847297 59847375 -182816978 - AluJo SINE Alu -2 300 234 1075 168 0 12 chr1 59847381 59847554 -182816799 - AluJo SINE Alu -131 181 11 320 206 0 16 chr1 59848388 59848451 -182815902 + L2 LINE L2 3201 3262 -10 2327 121 3 0 chr1 59848764 59849070 -182815283 + AluSx SINE Alu 1 307 -5 234 305 34 0 chr1 59849343 59849402 -182814951 + MIR SINE MIR 86 146 -62 2117 125 3 32 chr1 59849601 59849936 -182814417 - AluSx SINE Alu 0 332 7 2611 76 0 3 chr1 59849951 59850265 -182814088 - AluSp SINE Alu 0 313 1 333 259 95 41 chr1 59852050 59852197 -182812156 - MIR3 SINE MIR -20 188 34 2489 64 0 7 chr1 59852732 59853028 -182811325 - AluSq SINE Alu -19 294 1 1021 170 0 6 chr1 59853171 59853330 -182811023 - AluSp SINE Alu -22 291 134 2176 96 31 0 chr1 59853330 59853621 -182810732 - AluSc SINE Alu -9 300 1 2306 117 0 7 chr1 59853621 59853928 -182810425 - AluSx SINE Alu -7 305 1 231 266 92 18 chr1 59854010 59854119 -182810234 + L2 LINE L2 2311 2427 -887 2193 104 0 20 chr1 59854420 59854739 -182809614 - AluSx SINE Alu 0 312 7 2070 134 3 7 chr1 59854744 59855042 -182809311 - AluSx SINE Alu -15 297 1 2170 116 3 13 chr1 59855042 59855353 -182809000 - AluSx SINE Alu 0 312 5 1168 85 0 0 chr1 59855355 59855496 -182808857 - AluSq/x SINE Alu -171 141 1 285 286 82 47 chr1 59855567 59855738 -182808615 + L2 LINE L2 2914 3090 -182 390 278 111 16 chr1 59856169 59856295 -182808058 - MIR SINE MIR -122 140 3 437 287 23 16 chr1 59856483 59856612 -182807741 - MIR SINE MIR -120 142 13 325 137 20 0 chr1 59856775 59856826 -182807527 - MER5A DNA MER1_type -137 52 1 452 300 43 0 chr1 59857028 59857168 -182807185 - MIR SINE MIR -103 159 14 2213 121 0 3 chr1 59857393 59857698 -182806655 - AluSx SINE Alu -8 304 1 200 243 204 29 chr1 59857698 59857801 -182806552 - L2 LINE L2 -236 3036 2916 383 173 146 79 chr1 59857819 59857893 -182806460 + MER5A DNA MER1_type 4 72 -117 2237 112 10 10 chr1 59857893 59858205 -182806148 + AluSx SINE Alu 1 312 0 383 173 146 79 chr1 59858205 59858297 -182806056 + MER5A DNA MER1_type 72 183 -6 361 298 47 76 chr1 59858294 59858569 -182805784 - L2 LINE L2 -423 2891 2625 * 327 268 161 0 chr1 59858798 59858910 -182805443 + L1ME4a LINE L1 5478 5607 -514 685 152 19 0 chr1 59858919 59859024 -182805329 + FLAM_C SINE Alu 2 108 -35 317 213 228 24 chr1 59859181 59859249 -182805104 + L1ME4a LINE L1 5866 5919 -202 2251 85 7 36 chr1 59859249 59859556 -182804797 + AluSx SINE Alu 1 298 -14 317 213 228 24 chr1 59859556 59859698 -182804655 + L1ME4a LINE L1 5919 6119 -2 343 263 113 48 chr1 59860325 59860618 -182803735 + L2 LINE L2 2544 2855 -459 244 353 44 22 chr1 59860770 59860906 -182803447 - L3 LINE CR1 -72 1505 1367 222 37 0 0 chr1 59860961 59860988 -182803365 + (CA)n Simple_repeat Simple_repeat 1 27 0 529 297 115 61 chr1 59861305 59861635 -182802718 + L2 LINE L2 2884 3231 -41 189 284 108 0 chr1 59861762 59861836 -182802517 - MIR SINE MIR -61 201 120 595 301 82 9 chr1 59861852 59862071 -182802282 - MIR SINE MIR -13 249 15 840 173 0 0 chr1 59862340 59862473 -182801880 + FLAM_C SINE Alu 1 133 0 189 147 0 0 chr1 59862490 59862524 -182801829 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 2225 99 7 0 chr1 59862537 59862829 -182801524 - AluSp SINE Alu -18 295 2 228 247 247 14 chr1 59862978 59863051 -182801302 - MIR SINE MIR -151 111 22 725 331 85 22 chr1 59863494 59863896 -182800457 - L3 LINE CR1 -3 1574 1148 204 298 118 45 chr1 59864451 59864507 -182799846 - MIR SINE MIR -24 238 188 1800 94 135 4 chr1 59864507 59864774 -182799579 - AluSx SINE Alu 0 302 1 204 298 118 45 chr1 59864774 59864895 -182799458 - MIR SINE MIR -74 188 48 310 273 157 58 chr1 59865117 59865289 -182799064 + MIR SINE MIR 20 208 -54 241 294 24 35 chr1 59868479 59868564 -182795789 - MIR SINE MIR -61 147 64 229 357 0 29 chr1 59868967 59869107 -182795246 + (CATA)n Simple_repeat Simple_repeat 4 139 0 752 245 138 5 chr1 59869195 59869391 -182794962 - MIR SINE MIR -10 252 31 433 196 36 51 chr1 59870405 59870543 -182793810 - MIR3 SINE MIR -54 154 19 262 380 0 8 chr1 59870879 59871000 -182793353 + MIR3 SINE MIR 12 131 -77 253 358 55 9 chr1 59871727 59871836 -182792517 + MIR SINE MIR 33 146 -62 212 240 20 0 chr1 59872105 59872155 -182792198 - L2 LINE L2 -9 3263 3213 289 246 305 8 chr1 59872330 59872448 -182791905 + MIR SINE MIR 98 250 -12 1747 113 3 46 chr1 59872556 59872838 -182791515 - AluSx SINE Alu -8 304 35 185 254 85 0 chr1 59872847 59872906 -182791447 + MIR SINE MIR 90 153 -109 391 327 100 27 chr1 59872907 59873127 -182791226 + MIR SINE MIR 13 248 -14 383 265 20 0 chr1 59873410 59873512 -182790841 + MIR SINE MIR 43 146 -62 778 311 33 4 chr1 59873537 59873781 -182790572 - MIR SINE MIR 0 262 12 246 289 221 0 chr1 59874111 59874215 -182790138 - MIR SINE MIR -87 175 49 576 217 0 0 chr1 59874722 59874860 -182789493 + (CA)n Simple_repeat Simple_repeat 2 139 0 337 319 92 11 chr1 59874919 59875104 -182789249 - L2 LINE L2 -6 3307 3108 1943 145 10 3 chr1 59875216 59875526 -182788827 - AluSx SINE Alu 0 312 1 281 311 68 0 chr1 59875608 59875711 -182788642 - MIR SINE MIR -65 143 34 752 278 58 0 chr1 59875806 59876011 -182788342 - MIR SINE MIR -34 228 12 279 0 0 0 chr1 59876702 59876733 -182787620 + (TA)n Simple_repeat Simple_repeat 1 31 0 2417 86 0 3 chr1 59876733 59877047 -182787306 - AluSq SINE Alu 0 313 1 2034 119 34 0 chr1 59877047 59877341 -182787012 - AluSx SINE Alu -8 304 1 297 274 121 0 chr1 59877565 59877689 -182786664 + L2 LINE L2 2916 3054 -218 395 284 0 52 chr1 59877775 59877909 -182786444 - L2 LINE L2 -233 3039 2913 587 286 46 58 chr1 59878827 59879035 -182785318 + MIR SINE MIR 4 210 -52 2063 125 3 7 chr1 59879035 59879332 -182785021 + AluSx SINE Alu 1 296 -16 587 286 46 58 chr1 59879332 59879382 -182784971 + MIR SINE MIR 210 259 -3 225 255 82 20 chr1 59880102 59880200 -182784153 + L2 LINE L2 2903 3006 -266 359 290 31 8 chr1 59880201 59880388 -182783965 + L1MC4a LINE L1 5823 6017 -104 234 250 0 17 chr1 59880454 59880514 -182783839 - L1MCa LINE L1 -4362 2064 2006 2230 101 3 0 chr1 59880548 59880845 -182783508 - AluSq SINE Alu -15 298 1 553 271 17 17 chr1 59882098 59882288 -182782065 + MIR SINE MIR 30 219 -43 1612 144 6 77 chr1 59882330 59882642 -182781711 + AluJo SINE Alu 21 310 -2 387 294 39 20 chr1 59883014 59883167 -182781186 + MIR3 SINE MIR 34 189 -19 215 322 32 0 chr1 59883488 59883594 -182780759 - MIR SINE MIR -51 157 96 378 323 93 45 chr1 59883603 59883894 -182780459 + L2 LINE L2 2968 3272 0 461 247 200 6 chr1 59883963 59884168 -182780185 - MIR SINE MIR -10 252 11 215 275 64 0 chr1 59884299 59884375 -182779978 + MIR SINE MIR 61 126 -82 395 258 126 56 chr1 59884485 59884683 -182779670 + MIR SINE MIR 38 249 -13 336 238 72 110 chr1 59884710 59884867 -182779486 + L1MC4 LINE L1 7764 7907 -135 1642 151 21 32 chr1 59884867 59885151 -182779202 + AluSx SINE Alu 17 297 -15 336 238 72 110 chr1 59885151 59885283 -182779070 + L1MC4 LINE L1 7907 8042 0 625 250 94 48 chr1 59885615 59885792 -182778561 + L1MC5 LINE L1 7344 7511 -450 1949 104 0 0 chr1 59885792 59886062 -182778291 - AluY SINE Alu -1 310 41 625 250 94 48 chr1 59886062 59886122 -182778231 + L1MC5 LINE L1 7511 7567 -394 1692 170 0 69 chr1 59886122 59886457 -182777896 + AluJo SINE Alu 1 312 0 625 250 94 48 chr1 59886457 59886570 -182777783 + L1MC5 LINE L1 7567 7711 -250 189 0 0 0 chr1 59886570 59886591 -182777762 + (A)n Simple_repeat Simple_repeat 1 21 0 1842 139 0 0 chr1 59886592 59886859 -182777494 + AluSx SINE Alu 1 267 -45 180 0 0 0 chr1 59886866 59886886 -182777467 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 818 240 20 20 chr1 59887355 59887559 -182776794 + MIR SINE MIR 3 206 -56 808 94 6 88 chr1 59887569 59887677 -182776676 + L1MC3 LINE L1 7617 7708 -77 1748 177 37 0 chr1 59887677 59887976 -182776377 - AluJb SINE Alu -2 310 1 808 94 6 88 chr1 59887976 59888037 -182776316 + L1MC3 LINE L1 7708 7772 -13 2393 86 0 10 chr1 59888047 59888360 -182775993 + AluSx SINE Alu 1 310 -2 2072 93 3 30 chr1 59888378 59888678 -182775675 - AluSg SINE Alu -18 292 1 227 333 64 50 chr1 59888723 59888864 -182775489 + L2 LINE L2 3128 3270 -2 369 322 57 71 chr1 59889033 59889177 -182775176 + L3 LINE CR1 1268 1410 -167 2121 126 0 7 chr1 59889177 59889486 -182774867 + AluSx SINE Alu 1 307 -5 369 322 57 71 chr1 59889486 59889552 -182774801 + L3 LINE CR1 1410 1475 -102 472 223 27 18 chr1 59889629 59889741 -182774612 - MIR3 SINE MIR -15 193 81 899 240 68 34 chr1 59890122 59890414 -182773939 + L2 LINE L2 3010 3311 -2 217 281 170 33 chr1 59890804 59890957 -182773396 - L2 LINE L2 -190 3082 2909 431 291 30 8 chr1 59892148 59892282 -182772071 - MIR SINE MIR -7 255 119 189 300 29 14 chr1 59892550 59892620 -182771733 - MIR SINE MIR -101 107 37 222 336 64 24 chr1 59893571 59893696 -182770657 + MIR3 SINE MIR 46 175 -33 184 281 70 0 chr1 59894425 59894482 -182769871 - MIR SINE MIR -123 139 79 243 368 0 11 chr1 59894806 59894893 -182769460 + L2 LINE L2 2693 2778 -536 485 306 35 73 chr1 59895673 59895905 -182768448 + MIR SINE MIR 24 246 -16 190 345 207 11 chr1 59895974 59896148 -182768205 - MIR SINE MIR -42 220 13 235 310 0 0 chr1 59896951 59897009 -182767344 - L2 LINE L2 0 3313 3256 38 39 0 0 chr1 59897056 59897108 -182767245 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr1 59897238 59897261 -182767092 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2457 172 39 62 chr1 59898090 59898757 -182765596 + L1MB5 LINE L1 5515 6166 -8 21 0 0 0 chr1 59898757 59898778 -182765575 + AT_rich Low_complexity Low_complexity 1 21 0 366 230 14 0 chr1 59898953 59899027 -182765326 + MIR3 SINE MIR 113 187 -21 1034 259 38 96 chr1 59899138 59899376 -182764977 + LTR26E LTR ERV1 1 251 -368 1443 141 144 4 chr1 59899376 59899646 -182764707 - AluJb SINE Alu -4 308 1 1034 259 38 96 chr1 59899646 59899965 -182764388 + LTR26E LTR ERV1 251 608 -11 360 300 29 7 chr1 59899990 59900130 -182764223 + L2 LINE L2 2869 3011 -261 181 328 102 39 chr1 59900864 59900992 -182763361 + MIR SINE MIR 87 222 -40 305 235 86 0 chr1 59901297 59901378 -182762975 + MIR SINE MIR 121 208 -54 201 308 28 37 chr1 59901668 59901775 -182762578 + MIR3 SINE MIR 50 155 -53 2231 94 10 0 chr1 59901847 59902145 -182762208 - AluSp SINE Alu -12 301 1 2117 115 7 0 chr1 59902148 59902444 -182761909 - AluSx SINE Alu -14 298 1 512 290 28 65 chr1 59902444 59902661 -182761692 - MIR SINE MIR -44 218 10 549 315 64 21 chr1 59902958 59903193 -182761160 - L3 LINE CR1 -1 1576 1332 304 275 6 50 chr1 59903625 59903812 -182760541 + GA-rich Low_complexity Low_complexity 1 306 0 248 294 0 24 chr1 59904677 59904762 -182759591 + MIR SINE MIR 72 154 -108 300 73 0 55 chr1 59904772 59904827 -182759526 + Alu SINE Alu 251 302 0 315 183 0 0 chr1 59904845 59904905 -182759448 + MIR SINE MIR 181 240 -22 1940 116 0 21 chr1 59904929 59905213 -182759140 + AluSx SINE Alu 18 295 -17 1020 125 12 25 chr1 59905214 59905374 -182758979 + AluSg/x SINE Alu 137 294 -18 189 277 231 0 chr1 59905597 59905662 -182758691 - L3 LINE CR1 -909 668 589 230 307 109 0 chr1 59905726 59905827 -182758526 + L3 LINE CR1 245 356 -1221 196 265 20 0 chr1 59905878 59905927 -182758426 + L2 LINE L2 3259 3308 -5 272 351 0 68 chr1 59906010 59906215 -182758138 + L3 LINE CR1 749 939 -638 898 152 0 0 chr1 59906634 59906766 -182757587 + AluJo/FLAM SINE Alu 2 133 -169 1220 149 9 40 chr1 59906766 59906988 -182757365 - AluJb SINE Alu -14 298 84 857 170 7 0 chr1 59907012 59907159 -182757194 + FRAM SINE Alu 1 40 0 2260 100 3 0 chr1 59907236 59907536 -182756817 + AluSp SINE Alu 6 306 -7 665 296 139 70 chr1 59907576 59908316 -182756037 - L2 LINE L2 -138 3175 2487 2344 89 0 9 chr1 59908316 59908631 -182755722 + AluSx SINE Alu 1 312 0 665 296 139 70 chr1 59908631 59908864 -182755489 - L2 LINE L2 -826 2487 2271 2282 232 90 6 chr1 59908864 59909376 -182754977 + MLT1H1 LTR MaLR 1 555 0 665 296 139 70 chr1 59909376 59909421 -182754932 - L2 LINE L2 -1042 2271 2231 2258 94 7 0 chr1 59909421 59909720 -182754633 - AluSx SINE Alu -11 301 1 665 296 139 70 chr1 59909720 59910153 -182754200 - L2 LINE L2 -1082 2231 1617 336 376 113 24 chr1 59910218 59910431 -182753922 - MIR SINE MIR -4 258 27 182 194 0 0 chr1 59911098 59911129 -182753224 - MIR SINE MIR -115 147 117 1848 123 15 55 chr1 59911625 59911812 -182752541 - AluJb SINE Alu 0 312 142 2182 105 0 20 chr1 59911812 59912117 -182752236 - AluSx SINE Alu -13 299 1 1848 123 15 55 chr1 59912117 59912254 -182752099 - AluJb SINE Alu -170 142 1 398 281 68 73 chr1 59912357 59912549 -182751804 - MIR SINE MIR -15 247 57 811 141 0 0 chr1 59912608 59912729 -182751624 + AluJb SINE Alu 1 121 -191 2694 80 38 90 chr1 59912834 59913334 -182751019 + SVA Other Other 393 866 -520 1267 45 7 26 chr1 59913354 59913664 -182750689 + SVA Other Other 665 866 -592 6963 57 5 43 chr1 59913778 59914866 -182749487 + SVA Other Other 433 1386 0 1030 161 195 54 chr1 59914896 59914959 -182749394 + AluJo SINE Alu 2 55 -247 2192 65 4 4 chr1 59914959 59915234 -182749119 + AluSq SINE Alu 22 296 -17 1030 161 195 54 chr1 59915234 59915431 -182748922 + AluJo SINE Alu 55 299 -3 325 330 143 40 chr1 59915585 59915858 -182748495 + L2 LINE L2 2910 3210 -62 199 139 0 0 chr1 59916469 59916505 -182747848 - MIR SINE MIR -72 136 101 246 283 90 41 chr1 59916792 59916959 -182747394 + MIR SINE MIR 16 197 -65 466 248 19 116 chr1 59917198 59917456 -182746897 + L2 LINE L2 2832 3064 -249 644 209 76 0 chr1 59917479 59917637 -182746716 + MIR SINE MIR 39 208 -54 234 362 97 16 chr1 59917670 59917855 -182746498 + L2 LINE L2 3114 3313 0 2213 127 41 0 chr1 59917969 59918330 -182746023 + L1MA6 LINE L1 4035 4415 -1731 189 0 0 0 chr1 59918330 59918351 -182746002 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2213 127 41 0 chr1 59918351 59918382 -182745971 + L1MA6 LINE L1 4415 4443 -1703 812 167 0 0 chr1 59918383 59918503 -182745850 + FLAM_A SINE Alu 2 121 -12 2380 95 0 0 chr1 59918543 59918849 -182745504 - AluSg SINE Alu -4 306 1 25 0 0 0 chr1 59918853 59918878 -182745475 + AT_rich Low_complexity Low_complexity 1 25 0 1004 198 5 0 chr1 59918878 59919065 -182745288 + AluJo SINE Alu 123 310 -2 2144 115 0 3 chr1 59919078 59919373 -182744980 + AluSx SINE Alu 1 294 -18 4691 128 30 22 chr1 59919373 59919913 -182744440 + L1MA6 LINE L1 4447 4981 -1319 2279 108 0 10 chr1 59919913 59920227 -182744126 + AluSx SINE Alu 1 311 -1 4691 128 30 22 chr1 59920227 59920702 -182743651 + L1MA6 LINE L1 4981 5451 -849 2108 99 0 7 chr1 59920702 59921008 -182743345 + AluSg SINE Alu 1 304 0 4691 128 30 22 chr1 59921008 59921313 -182743040 + L1MA6 LINE L1 5451 5752 -548 1655 166 30 17 chr1 59921313 59921609 -182742744 + AluJo SINE Alu 1 300 -12 4691 128 30 22 chr1 59921609 59921626 -182742727 + L1MA6 LINE L1 5752 5767 -533 396 0 0 0 chr1 59921626 59921670 -182742683 + (CA)n Simple_repeat Simple_repeat 2 45 0 4691 128 30 22 chr1 59921670 59921750 -182742603 + L1MA6 LINE L1 5767 5871 -429 5994 97 5 1 chr1 59921876 59922746 -182741607 + THE1A-int LTR MaLR 708 1580 0 2559 93 8 8 chr1 59922748 59923101 -182741252 + THE1A LTR MaLR 3 355 0 355 147 15 0 chr1 59923101 59923169 -182741184 - MER53 DNA DNA -83 106 38 2053 108 4 0 chr1 59923187 59923486 -182740867 - AluSg SINE Alu 0 300 1 1432 163 4 62 chr1 59923538 59923814 -182740539 + AluJb SINE Alu 21 280 -32 2056 134 0 7 chr1 59923819 59924118 -182740235 + AluSq SINE Alu 4 300 -13 2387 92 0 0 chr1 59924118 59924424 -182739929 + AluSg SINE Alu 1 306 -4 364 274 0 11 chr1 59924439 59924534 -182739819 + MIR SINE MIR 57 150 -112 431 344 68 11 chr1 59925253 59925460 -182738893 + MIR SINE MIR 30 246 -16 1795 161 17 10 chr1 59925494 59925793 -182738560 - AluJb SINE Alu -11 301 1 1046 244 91 39 chr1 59926101 59926487 -182737866 + MER115 DNA AcHobo 29 434 -259 322 296 155 0 chr1 59926706 59926854 -182737499 - MIR SINE MIR -20 242 70 272 299 187 55 chr1 59927111 59927586 -182736767 + L2 LINE L2 2356 2893 -421 368 306 145 27 chr1 59927720 59927906 -182736447 - MIR SINE MIR -47 215 8 24 32 0 0 chr1 59928283 59928314 -182736039 + GC_rich Low_complexity Low_complexity 1 31 0 488 298 58 21 chr1 59928373 59928564 -182735789 + MIR3 SINE MIR 4 201 -7 232 324 68 14 chr1 59928662 59928810 -182735543 - MIR3 SINE MIR -8 200 45 193 196 43 0 chr1 59929133 59929179 -182735174 - MIR SINE MIR -182 80 33 217 177 25 0 chr1 59929627 59929706 -182734647 + (CA)n Simple_repeat Simple_repeat 1 81 0 335 241 0 35 chr1 59929719 59929751 -182734602 + CT-rich Low_complexity Low_complexity 1 33 -79 209 33 33 0 chr1 59929751 59929781 -182734572 + (CA)n Simple_repeat Simple_repeat 1 31 0 335 241 0 35 chr1 59929781 59929826 -182734527 + CT-rich Low_complexity Low_complexity 33 75 -37 290 87 22 0 chr1 59929826 59929872 -182734481 + (CA)n Simple_repeat Simple_repeat 1 47 0 335 241 0 35 chr1 59929872 59929909 -182734444 + CT-rich Low_complexity Low_complexity 75 112 0 198 0 0 0 chr1 59929958 59929980 -182734373 + (TCTCCC)n Simple_repeat Simple_repeat 3 24 0 788 175 0 29 chr1 59930492 59930629 -182733724 - FLAM_A SINE Alu 0 133 1 189 310 14 14 chr1 59930767 59930838 -182733515 + L2 LINE L2 2987 3057 -215 2254 85 0 0 chr1 59931544 59931856 -182732497 - AluY SINE Alu 0 313 2 1216 213 133 44 chr1 59931968 59932317 -182732036 + MER113 DNA MER1_type? 6 409 -112 2160 117 7 0 chr1 59932317 59932624 -182731729 - AluSx SINE Alu -3 309 1 1216 213 133 44 chr1 59932624 59932748 -182731605 + MER113 DNA MER1_type? 409 521 0 195 214 50 150 chr1 59932828 59932968 -182731385 + MIR3 SINE MIR 1 126 -82 423 291 42 30 chr1 59933284 59933449 -182730904 + L2 LINE L2 2911 3077 -195 * 539 242 8 32 chr1 59933445 59933569 -182730784 - L2 LINE L2 0 3313 3193 1417 112 0 96 chr1 59934274 59934525 -182729828 - MER30 DNA MER1_type -1 229 3 427 267 83 0 chr1 59934678 59934798 -182729555 + MIR SINE MIR 76 205 -57 297 297 130 67 chr1 59934969 59935238 -182729115 - L2 LINE L2 0 3313 3028 1967 92 66 0 chr1 59935562 59935835 -182728518 - AluSx SINE Alu -16 296 6 1245 142 39 0 chr1 59935900 59936104 -182728249 - AluJo SINE Alu -16 296 85 426 91 0 0 chr1 59936104 59936159 -182728194 - AluSc SINE Alu -61 248 194 1126 223 117 46 chr1 59936159 59936441 -182727912 - AluJo SINE Alu 0 302 1 604 184 52 131 chr1 59936443 59936530 -182727823 - MER33 DNA MER1_type -2350 235 143 1615 152 67 0 chr1 59936530 59936799 -182727554 - AluJo SINE Alu -25 287 1 604 184 52 131 chr1 59936799 59936817 -182727536 - MER33 DNA MER1_type -2442 143 125 2298 101 3 0 chr1 59936817 59937124 -182727229 + AluSp SINE Alu 1 308 -5 604 184 52 131 chr1 59937124 59937284 -182727069 - MER33 DNA MER1_type -2460 125 1 576 365 115 20 chr1 59937335 59937981 -182726372 - L2 LINE L2 -341 2973 2267 417 293 6 58 chr1 59937958 59938132 -182726221 + L3 LINE CR1 1403 1567 -10 * 2381 57 24 0 chr1 59938385 59938682 -182725671 - AluY SINE Alu -7 304 1 456 139 0 14 chr1 59939385 59939457 -182724896 + AluJ/FRAM SINE Alu 228 298 -14 2040 99 9 56 chr1 59939578 59939902 -182724451 - AluSx SINE Alu 0 312 4 189 74 0 0 chr1 59939988 59940015 -182724338 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 337 202 0 96 chr1 59940263 59940367 -182723986 - L2 LINE L2 -1 3312 3219 21 57 0 0 chr1 59941797 59941832 -182722521 + GC_rich Low_complexity Low_complexity 1 35 0 402 240 29 0 chr1 59943281 59943385 -182720968 - MIR3 SINE MIR -12 196 90 206 282 42 0 chr1 59943778 59943849 -182720504 + MIR3 SINE MIR 111 184 -24 203 133 0 0 chr1 59943939 59943969 -182720384 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 254 93 0 23 chr1 59943987 59944030 -182720323 + (TCCCC)n Simple_repeat Simple_repeat 3 44 0 376 324 159 23 chr1 59944626 59944978 -182719375 - L2 LINE L2 -41 3231 2832 1497 122 15 107 chr1 59945121 59945449 -182718904 - AluJb SINE Alu -14 298 1 2316 92 3 0 chr1 59945451 59945754 -182718599 - AluSc SINE Alu -5 304 1 279 0 0 0 chr1 59945756 59945787 -182718566 + (TA)n Simple_repeat Simple_repeat 2 32 0 2426 75 3 0 chr1 59945787 59946093 -182718260 - AluSp SINE Alu -6 307 1 989 114 0 0 chr1 59946095 59946227 -182718126 - AluSq/x SINE Alu -177 136 5 858 169 0 0 chr1 59946417 59946559 -182717794 + FLAM_C SINE Alu 1 142 -1 2169 118 10 0 chr1 59946611 59946916 -182717437 + AluSx SINE Alu 1 308 -4 355 379 63 36 chr1 59946951 59947363 -182716990 + L2 LINE L2 2839 3261 -11 309 231 0 0 chr1 59947407 59947472 -182716881 - MIR SINE MIR 0 262 198 936 142 0 0 chr1 59947473 59947614 -182716739 - FLAM_C SINE Alu -2 141 1 257 275 99 0 chr1 59947626 59947717 -182716636 - MIR SINE MIR -82 180 81 239 141 141 28 chr1 59947719 59947790 -182716563 + L1ME2 LINE L1 6086 6164 0 231 279 33 0 chr1 59947893 59947954 -182716399 - MIR SINE MIR -177 85 23 475 228 132 37 chr1 59948574 59948763 -182715590 + MIR SINE MIR 54 260 -2 431 363 42 53 chr1 59948945 59949034 -182715319 - L1ME LINE L1 -339 5823 5734 2114 108 7 0 chr1 59949034 59949329 -182715024 + AluSx SINE Alu 9 305 -7 431 363 42 53 chr1 59949329 59949672 -182714681 - L1ME LINE L1 -428 5734 5396 342 305 109 0 chr1 59949951 59950079 -182714274 - L2 LINE L2 -6 3266 3125 1180 243 49 43 chr1 59950794 59951381 -182712972 + MLT1G1 LTR MaLR 1 555 0 241 280 93 0 chr1 59951429 59951504 -182712849 + L2 LINE L2 3232 3313 0 275 259 58 79 chr1 59951508 59951647 -182712706 - L2 LINE L2 -139 3133 2998 277 244 99 23 chr1 59952054 59952185 -182712168 - MIR3 SINE MIR -14 194 54 185 333 113 53 chr1 59952163 59952313 -182712040 - MIR3 SINE MIR -14 194 36 * 279 297 135 34 chr1 59952628 59952776 -182711577 - MIR SINE MIR -69 193 31 23 68 0 0 chr1 59952941 59952985 -182711368 + GC_rich Low_complexity Low_complexity 1 44 0 244 200 250 12 chr1 59953484 59953564 -182710789 + MIR SINE MIR 38 136 -72 2206 99 3 6 chr1 59953947 59954259 -182710094 - AluSq SINE Alu -2 311 1 2120 114 6 19 chr1 59954267 59954583 -182709770 - AluSx SINE Alu 0 312 1 245 240 39 58 chr1 59954820 59954924 -182709429 - MIR3 SINE MIR -92 116 15 238 288 167 0 chr1 59955398 59955530 -182708823 + L2 LINE L2 2920 3073 -240 697 284 57 35 chr1 59955815 59956044 -182708309 - MIR SINE MIR -18 244 11 863 205 53 6 chr1 59956265 59956436 -182707917 + FRAM SINE Alu 1 174 -2 4343 73 2 11 chr1 59956445 59956869 -182707484 + MER41A LTR ERV1 1 420 -134 2068 124 3 3 chr1 59956869 59957167 -182707186 - AluSp SINE Alu -15 298 1 4343 73 2 11 chr1 59957167 59957301 -182707052 + MER41A LTR ERV1 420 554 0 417 147 32 11 chr1 59957301 59957386 -182706967 + GA-rich Low_complexity Low_complexity 8 97 0 807 138 0 3 chr1 59957387 59957611 -182706742 + AluSx SINE Alu 3 295 -17 2230 110 0 0 chr1 59957611 59957919 -182706434 + AluSc SINE Alu 1 308 -1 2214 104 0 7 chr1 59957923 59958230 -182706123 + AluSg SINE Alu 1 305 -5 2207 94 0 10 chr1 59958230 59958528 -182705825 + AluSq SINE Alu 1 296 -17 1300 174 12 127 chr1 59958530 59958704 -182705649 + AluJo SINE Alu 2 113 -251 2127 101 7 7 chr1 59958704 59959001 -182705352 + AluSq SINE Alu 1 297 -16 1300 174 12 127 chr1 59959001 59959228 -182705125 + AluJo SINE Alu 113 364 0 2205 114 3 0 chr1 59959337 59959643 -182704710 - AluSg SINE Alu -3 307 1 187 278 93 0 chr1 59960209 59960263 -182704090 - L2 LINE L2 0 3272 3214 201 328 102 21 chr1 59960419 59960605 -182703748 - L2 LINE L2 -257 3015 2815 946 203 55 0 chr1 59960633 59960796 -182703557 - FAM SINE Alu -3 172 1 1998 141 0 56 chr1 59961436 59961605 -182702748 - AluSx SINE Alu -11 301 124 198 0 0 0 chr1 59961613 59961635 -182702718 + (TG)n Simple_repeat Simple_repeat 1 22 0 1963 139 32 0 chr1 59961635 59961907 -182702446 - AluSq SINE Alu -28 285 2 2558 54 14 0 chr1 59961909 59962205 -182702148 - AluSp SINE Alu -13 300 1 1998 141 0 56 chr1 59962205 59962351 -182702002 - AluSx SINE Alu -189 123 1 2124 149 0 13 chr1 59962360 59962676 -182701677 - AluSx SINE Alu 0 312 1 2377 93 0 0 chr1 59963232 59963522 -182700831 + AluSc SINE Alu 1 290 -19 1714 150 44 10 chr1 59963780 59964053 -182700300 + AluJb SINE Alu 1 286 -26 450 0 0 0 chr1 59964053 59964103 -182700250 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 1714 150 44 10 chr1 59964103 59964122 -182700231 + AluJb SINE Alu 286 303 -9 344 193 160 25 chr1 59964175 59964294 -182700059 - MLT1A1 LTR MaLR -5 537 403 2159 233 59 8 chr1 59964761 59965271 -182699082 + MLT1F LTR MaLR 1 536 -6 1951 170 0 43 chr1 59965284 59965422 -182698931 - MLT1A1 LTR MaLR -11 354 212 2437 85 0 0 chr1 59965422 59965715 -182698638 - AluSc SINE Alu -16 293 1 1951 170 0 43 chr1 59965715 59965946 -182698407 - MLT1A1 LTR MaLR -153 212 1 228 284 45 0 chr1 59966652 59966719 -182697634 - LTR16C LTR ERVL -1 490 421 426 238 221 22 chr1 59966783 59966964 -182697389 - LTR16C LTR ERVL -186 305 89 2130 120 13 0 chr1 59967329 59967630 -182696723 + AluSx SINE Alu 8 312 0 1139 285 108 24 chr1 59967708 59967882 -182696471 + MLT1K LTR MaLR 85 243 -345 2424 84 0 0 chr1 59967882 59968181 -182696172 + AluSg SINE Alu 1 299 -11 1139 285 108 24 chr1 59968181 59968469 -182695884 + MLT1K LTR MaLR 243 586 -2 2381 88 0 7 chr1 59968517 59968823 -182695530 + AluSq SINE Alu 1 304 -9 1603 179 0 75 chr1 59968849 59969168 -182695185 + AluSx SINE Alu 18 312 0 1425 147 110 77 chr1 59969175 59969448 -182694905 - AluJo SINE Alu -30 282 1 2095 156 0 0 chr1 59969482 59969777 -182694576 - AluJb SINE Alu -16 296 2 563 251 82 6 chr1 59970625 59970796 -182693557 + MIR SINE MIR 65 248 -14 380 336 7 7 chr1 59970887 59971036 -182693317 + (TG)n Simple_repeat Simple_repeat 2 150 0 200 206 0 0 chr1 59971079 59971113 -182693240 + (CAG)n Simple_repeat Simple_repeat 1 34 0 401 294 72 13 chr1 59971542 59971695 -182692658 + MIR3 SINE MIR 32 193 -15 1129 181 10 0 chr1 59971879 59972084 -182692269 + MER3 DNA MER1_type 3 209 0 441 81 0 0 chr1 59972108 59972170 -182692183 + (TTCA)n Simple_repeat Simple_repeat 1 62 0 342 261 88 122 chr1 59972170 59972758 -182691595 - L2 LINE L2 -11 3302 2727 2216 119 0 7 chr1 59972882 59973192 -182691161 + AluSx SINE Alu 1 308 0 295 246 24 63 chr1 59973659 59973785 -182690568 - MIR SINE MIR -56 206 86 618 307 84 13 chr1 59973814 59974052 -182690301 + MIR SINE MIR 8 262 0 1075 83 0 0 chr1 59974369 59974502 -182689851 + AluSp SINE Alu 1 133 -180 555 16 0 0 chr1 59974521 59974585 -182689768 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 422 295 24 51 chr1 59974585 59974720 -182689633 + L1M4 LINE L1 4583 4709 -1437 2385 109 44 53 chr1 59974720 59974771 -182689582 - MSTA LTR MaLR 0 428 378 2023 153 0 10 chr1 59974771 59975079 -182689274 - AluJb SINE Alu -7 305 1 2385 109 44 53 chr1 59975079 59975457 -182688896 - MSTA LTR MaLR -50 378 3 422 295 24 51 chr1 59975457 59975575 -182688778 + L1M4 LINE L1 4709 4829 -1317 471 174 139 26 chr1 59975606 59975721 -182688632 + MIR SINE MIR 1 128 -134 356 292 161 0 chr1 59975725 59975893 -182688460 + L1M4 LINE L1 4885 5079 -1067 2156 114 10 7 chr1 59975931 59976237 -182688116 + AluSx SINE Alu 5 311 -1 612 164 136 50 chr1 59976265 59976405 -182687948 + FRAM SINE Alu 1 152 -24 326 216 34 34 chr1 59976411 59976499 -182687854 - L1MCa LINE L1 -4358 2068 1981 381 179 2 29 chr1 59976537 59976626 -182687727 + AluJ/FLAM SINE Alu 1 71 -231 254 205 0 0 chr1 59976729 59976772 -182687581 - AluJ/monomer SINE Alu -261 39 1 2541 80 3 0 chr1 59976874 59977207 -182687146 + AluSp SINE Alu 1 334 0 2077 108 19 29 chr1 59977216 59977523 -182686830 + AluSx SINE Alu 1 304 -8 1193 134 21 16 chr1 59978076 59978303 -182686050 + AluSg/x SINE Alu 122 349 0 2311 103 30 0 chr1 59978846 59979147 -182685206 - AluSx SINE Alu -2 310 1 1950 160 0 28 chr1 59979155 59979473 -182684880 - AluJb SINE Alu -3 309 1 867 164 96 0 chr1 59979829 59980006 -182684347 + MIR SINE MIR 18 211 -51 334 330 119 53 chr1 59980256 59980686 -182683667 - L2 LINE L2 -3 3269 2812 244 317 86 3 chr1 59982902 59983022 -182681331 + MIR SINE MIR 42 170 -86 303 267 130 15 chr1 59983622 59983753 -182680600 - MIR3 SINE MIR -48 160 15 909 210 34 0 chr1 59984159 59984335 -182680018 - MER5A DNA MER1_type -2 187 6 191 214 0 0 chr1 59984349 59984391 -182679962 - MIR SINE MIR -56 152 111 2299 83 13 22 chr1 59984391 59984566 -182679787 - AluSx SINE Alu -1 311 139 2554 60 3 0 chr1 59984566 59984864 -182679489 - AluY SINE Alu -12 299 1 2299 83 13 22 chr1 59984864 59985002 -182679351 - AluSx SINE Alu -173 139 1 508 328 72 8 chr1 59985066 59985301 -182679052 - MIR SINE MIR -1 261 12 332 300 107 7 chr1 59985674 59985824 -182678529 + L2 LINE L2 3108 3272 0 377 291 48 88 chr1 59986186 59986372 -182677981 + L2 LINE L2 2914 3079 -193 251 28 28 0 chr1 59986372 59986408 -182677945 + (CA)n Simple_repeat Simple_repeat 1 37 0 377 291 48 88 chr1 59986408 59986595 -182677758 + L2 LINE L2 3079 3272 0 261 279 23 0 chr1 59986610 59986696 -182677657 + (TGAA)n Simple_repeat Simple_repeat 3 90 0 240 323 61 0 chr1 59988004 59988103 -182676250 - L2 LINE L2 -4 3268 3164 2481 74 6 3 chr1 59988348 59988659 -182675694 + AluSq SINE Alu 1 312 -1 461 191 0 24 chr1 59989192 59989276 -182675077 + LTR2B LTR ERV1 409 490 0 407 294 52 26 chr1 59989473 59989554 -182674799 - L1MC4a LINE L1 -1897 5911 5834 639 191 7 37 chr1 59989554 59989690 -182674663 - FLAM_C SINE Alu -1 132 1 407 294 52 26 chr1 59989690 59989761 -182674592 - L1MC4a LINE L1 -1974 5834 5755 2390 104 0 0 chr1 59989769 59990077 -182674276 - AluSc SINE Alu -1 308 1 358 171 68 0 chr1 59990081 59990169 -182674184 - L1MA10 LINE L1 0 6334 6241 315 287 0 59 chr1 59990173 59990274 -182674079 - L1MC4 LINE L1 -1339 6703 6609 246 247 0 11 chr1 59990286 59990375 -182673978 + L1MC4 LINE L1 6614 6701 -1341 * 1495 206 40 48 chr1 59990339 59990796 -182673557 - L1ME1 LINE L1 -95 6071 5670 2383 93 3 0 chr1 59990796 59991096 -182673257 - AluSp SINE Alu -12 301 1 1495 206 40 48 chr1 59991096 59991137 -182673216 - L1ME1 LINE L1 -496 5670 5630 377 219 0 0 chr1 59991137 59991210 -182673143 + FRAM SINE Alu 20 92 -74 1345 199 55 48 chr1 59991224 59991274 -182673079 - L1ME1 LINE L1 -1310 4836 4788 2012 149 0 7 chr1 59991274 59991575 -182672778 - AluSx SINE Alu -13 299 1 1345 199 55 48 chr1 59991575 59991940 -182672413 - L1ME1 LINE L1 -1358 4788 4418 290 381 0 0 chr1 59992438 59992606 -182671747 + (CCA)n Simple_repeat Simple_repeat 1 168 0 3281 267 63 38 chr1 59993242 59994274 -182670079 - L1ME1 LINE L1 -1697 4449 3444 2237 119 0 0 chr1 59994274 59994569 -182669784 - AluSc SINE Alu -14 295 1 3281 267 63 38 chr1 59994569 59995077 -182669276 - L1ME1 LINE L1 -2702 3444 2947 2030 141 20 0 chr1 59995077 59995381 -182668972 - AluJb SINE Alu -2 310 1 3281 267 63 38 chr1 59995381 59995472 -182668881 - L1ME1 LINE L1 -3199 2947 2860 1261 102 0 22 chr1 59995472 59995698 -182668655 + L1 LINE L1 4415 4635 -1511 675 136 25 0 chr1 59995675 59995793 -182668560 + L1MA8 LINE L1 6143 6263 -28 * 1694 174 0 34 chr1 59995933 59996263 -182668090 + AluJo SINE Alu 1 320 0 2353 84 0 46 chr1 59996361 59996684 -182667669 + AluSc SINE Alu 1 308 -1 886 252 92 46 chr1 59996721 59997198 -182667155 + L1ME LINE L1 5272 5770 -392 1838 161 50 7 chr1 59997334 59997633 -182666720 + AluJb SINE Alu 1 312 0 205 207 17 35 chr1 59997918 59997931 -182666422 + (TAAA)n Simple_repeat Simple_repeat 2 14 -44 1140 149 79 0 chr1 59997931 59998159 -182666194 + L1MC2 LINE L1 6090 6335 -9 205 207 17 35 chr1 59998159 59998203 -182666150 + (TAAA)n Simple_repeat Simple_repeat 14 58 0 1939 175 3 0 chr1 59998467 59998776 -182665577 - AluJb SINE Alu -2 310 1 2234 129 0 3 chr1 59998861 59999172 -182665181 - AluSq SINE Alu -3 310 1 24 0 0 0 chr1 59999175 59999199 -182665154 + AT_rich Low_complexity Low_complexity 1 24 0 246 287 53 11 chr1 59999202 59999296 -182665057 + HAL1 LINE L1 47 144 -2363 1853 139 57 38 chr1 59999424 59999792 -182664561 + THE1C LTR MaLR 1 375 0 867 223 127 118 chr1 59999893 60000227 -182664126 + HAL1 LINE L1 636 966 -1541 282 93 47 0 chr1 60000227 60000270 -182664083 + U6 snRNA snRNA 2 46 -61 867 223 127 118 chr1 60000270 60000321 -182664032 + HAL1 LINE L1 966 1015 -1492 2320 94 0 13 chr1 60000321 60000630 -182663723 + AluSg SINE Alu 1 305 -5 2221 121 3 16 chr1 60000640 60000953 -182663400 + AluSx SINE Alu 1 309 -3 867 223 127 118 chr1 60000953 60001333 -182663020 + HAL1 LINE L1 1023 1462 -1045 1660 244 23 85 chr1 60001354 60001886 -182662467 - MLT1J LTR MaLR -7 504 6 1957 152 3 20 chr1 60001920 60002217 -182662136 - AluJo SINE Alu -20 292 1 322 293 96 43 chr1 60002265 60002453 -182661900 + LTR50 LTR ERVL 1 198 -597 492 251 106 69 chr1 60002523 60002907 -182661446 + LTR33A LTR ERVL 347 783 -12 1429 169 107 7 chr1 60003033 60003305 -182661048 - AluJo SINE Alu -13 299 1 2311 114 3 3 chr1 60003572 60003879 -182660474 - AluSx SINE Alu -5 307 1 277 240 0 13 chr1 60003931 60004006 -182660347 - MLT1I LTR MaLR -4 405 332 255 303 90 8 chr1 60004052 60004174 -182660179 + HAL1 LINE L1 1829 1960 -547 343 293 53 15 chr1 60004192 60004325 -182660028 + HAL1 LINE L1 1991 2128 -379 1371 120 0 37 chr1 60004432 60004649 -182659704 + AluSg/x SINE Alu 92 300 -10 328 263 35 41 chr1 60004696 60004867 -182659486 + HAL1b LINE L1 746 915 -433 482 299 13 30 chr1 60004990 60005221 -182659132 + HAL1 LINE L1 2276 2502 -5 1343 117 0 21 chr1 60005233 60005250 -182659103 + AluSg/x SINE Alu 120 136 -176 2565 60 3 7 chr1 60005250 60005551 -182658802 + AluY SINE Alu 1 300 -11 1343 117 0 21 chr1 60005551 60005721 -182658632 + AluSg/x SINE Alu 136 303 -9 1259 31 0 19 chr1 60005758 60005920 -182658433 + L1PA3 LINE L1 5997 6155 0 1266 144 62 10 chr1 60006004 60006212 -182658141 - AluJb SINE Alu -30 282 64 423 83 17 0 chr1 60006346 60006406 -182657947 - Alu SINE Alu -256 62 2 2831 63 19 29 chr1 60006406 60006453 -182657900 - THE1A-int LTR MaLR -1174 406 360 2296 112 0 3 chr1 60006453 60006758 -182657595 + AluSx SINE Alu 1 304 -8 2831 63 19 29 chr1 60006758 60007120 -182657233 - THE1A-int LTR MaLR -1220 360 1 2416 97 14 0 chr1 60007120 60007470 -182656883 - THE1A LTR MaLR 0 355 1 312 179 11 105 chr1 60007471 60007500 -182656853 + MER53 DNA DNA 103 133 -56 1690 66 229 0 chr1 60007500 60007758 -182656595 + AluYb8 SINE Alu 2 318 0 312 179 11 105 chr1 60007758 60007823 -182656530 + MER53 DNA DNA 133 188 -1 278 260 79 39 chr1 60007894 60008021 -182656332 + L2 LINE L2 2955 3086 -186 2276 84 28 0 chr1 60008102 60008388 -182655965 + AluSp SINE Alu 1 294 -19 319 269 37 28 chr1 60008465 60008573 -182655780 + MIR3 SINE MIR 75 183 -25 246 326 65 60 chr1 60008665 60008849 -182655504 + MIR SINE MIR 60 244 -18 180 0 0 0 chr1 60009015 60009035 -182655318 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 218 135 54 0 chr1 60009703 60009740 -182654613 + GA-rich Low_complexity Low_complexity 2 40 0 180 234 117 13 chr1 60010017 60010094 -182654259 + MIR SINE MIR 34 118 -90 375 298 71 12 chr1 60010144 60010312 -182654041 + MIR SINE MIR 8 185 -77 216 226 40 105 chr1 60010891 60011015 -182653338 - MIR SINE MIR -72 136 21 324 278 22 0 chr1 60011049 60011139 -182653214 + MIR SINE MIR 56 147 -61 312 219 61 70 chr1 60012673 60012787 -182651566 + MIR SINE MIR 80 192 -70 237 217 87 54 chr1 60012852 60012944 -182651409 + MIR3 SINE MIR 109 203 -5 283 321 138 6 chr1 60013028 60013187 -182651166 + MIR3 SINE MIR 18 197 -11 228 248 112 62 chr1 60013211 60013372 -182650981 - L2 LINE L2 -559 2755 2587 336 24 0 0 chr1 60013454 60013483 -182650870 + (TG)n Simple_repeat Simple_repeat 1 70 0 336 24 0 0 chr1 60013483 60013524 -182650829 + (TG)n Simple_repeat Simple_repeat 2 42 0 339 88 176 0 chr1 60013535 60013603 -182650750 - FLAM_A SINE Alu -10 123 44 306 0 0 0 chr1 60013732 60013766 -182650587 + (TG)n Simple_repeat Simple_repeat 2 35 0 235 301 39 10 chr1 60013773 60013876 -182650477 + L2 LINE L2 3150 3255 -17 201 245 41 0 chr1 60013900 60013949 -182650404 + MIR SINE MIR 42 92 -116 433 294 79 0 chr1 60014739 60014865 -182649488 - L2 LINE L2 0 3272 3137 520 255 34 0 chr1 60015019 60015168 -182649185 - LTR16A LTR ERVL -39 411 258 215 185 0 19 chr1 60015178 60015232 -182649121 + CT-rich Low_complexity Low_complexity 4 56 0 1014 144 0 0 chr1 60015234 60015414 -182648939 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1045 114 0 22 chr1 60015426 60015610 -182648743 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 927 156 0 0 chr1 60015613 60015792 -182648561 + CT-rich Low_complexity Low_complexity 2 180 0 251 222 0 14 chr1 60015813 60015885 -182648468 + CT-rich Low_complexity Low_complexity 1 71 0 1292 154 15 0 chr1 60015908 60016109 -182648244 - AluJo SINE Alu -107 205 2 1609 169 15 30 chr1 60016109 60016375 -182647978 - AluJb SINE Alu -40 272 11 2348 59 42 0 chr1 60016384 60016672 -182647681 - AluYa5 SINE Alu -11 300 1 188 33 0 33 chr1 60016683 60016713 -182647640 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr1 60016717 60016737 -182647616 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1243 137 0 34 chr1 60016739 60016944 -182647409 - AluJo SINE Alu -30 282 85 684 297 35 9 chr1 60016946 60017178 -182647175 - LTR16A LTR ERVL -195 255 18 585 272 178 19 chr1 60017199 60017508 -182646845 - L2 LINE L2 -337 2977 2620 323 288 50 88 chr1 60017710 60017870 -182646483 - L3 LINE CR1 -2 1575 1422 938 173 12 0 chr1 60017900 60018068 -182646285 - AluJb SINE Alu -13 299 130 222 235 165 17 chr1 60018078 60018193 -182646160 - L3 LINE CR1 -216 1361 1230 251 247 194 21 chr1 60018416 60018509 -182645844 + MIR SINE MIR 29 137 -71 2349 101 0 7 chr1 60018520 60018818 -182645535 - AluSg SINE Alu -14 296 1 1953 156 7 19 chr1 60019288 60019595 -182644758 + AluSx SINE Alu 1 303 -9 1011 77 0 0 chr1 60019601 60019731 -182644622 + AluY SINE Alu 179 308 -3 902 161 0 0 chr1 60019743 60019880 -182644473 + AluJo SINE Alu 5 141 -171 26 0 0 0 chr1 60019913 60019939 -182644414 + AT_rich Low_complexity Low_complexity 1 26 0 1542 174 6 61 chr1 60019951 60020094 -182644259 + AluJo SINE Alu 5 123 -189 2411 91 0 0 chr1 60020094 60020392 -182643961 + AluSg SINE Alu 1 298 -12 1542 174 6 61 chr1 60020392 60020559 -182643794 + AluJo SINE Alu 123 298 -14 425 278 23 8 chr1 60020574 60020707 -182643646 - MIR SINE MIR -18 244 110 928 167 49 6 chr1 60020720 60020882 -182643471 + AluSg/x SINE Alu 135 303 -6 870 224 78 12 chr1 60020893 60021148 -182643205 - LTR33 LTR ERVL -6 515 244 459 238 23 76 chr1 60021176 60021348 -182643005 - LTR33 LTR ERVL -354 167 5 186 43 0 0 chr1 60021450 60021473 -182642880 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2227 108 0 3 chr1 60021477 60021773 -182642580 - AluY SINE Alu -16 295 1 189 0 0 0 chr1 60021780 60021801 -182642552 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 897 159 0 0 chr1 60021805 60021931 -182642422 - FRAM SINE Alu -39 137 12 1777 123 112 4 chr1 60022267 60022536 -182641817 - AluSx SINE Alu -14 298 1 1655 213 30 178 chr1 60022799 60023132 -182641221 - L1M4 LINE L1 -1478 4668 4287 956 137 0 0 chr1 60023132 60023263 -182641090 - FLAM_C SINE Alu -2 141 11 1655 213 30 178 chr1 60023263 60023449 -182640904 - L1M4 LINE L1 -1859 4287 4075 2285 116 0 0 chr1 60023449 60023742 -182640611 - AluSg SINE Alu -17 293 1 1655 213 30 178 chr1 60023742 60024118 -182640235 - L1M4 LINE L1 -2071 4075 3794 410 317 178 22 chr1 60024156 60024429 -182639924 - L2 LINE L2 -658 2656 2427 2171 118 0 0 chr1 60024429 60024778 -182639575 + AluSg1 SINE Alu 1 349 0 410 317 178 22 chr1 60024778 60024957 -182639396 - L2 LINE L2 -887 2427 2132 40903 60 2 2 chr1 60024983 60030024 -182634329 + L1PA5 LINE L1 11 5025 -1129 2479 85 0 0 chr1 60030024 60030329 -182634024 + AluY SINE Alu 1 305 -6 40903 60 2 2 chr1 60030329 60031459 -182632894 + L1PA5 LINE L1 5025 6154 0 2384 75 6 31 chr1 60031509 60031829 -182632524 + AluSq SINE Alu 1 312 -1 238 267 100 25 chr1 60031841 60031961 -182632392 - L2 LINE L2 -1217 2097 1969 273 333 22 22 chr1 60032093 60032228 -182632125 - MIR3 SINE MIR -54 154 20 362 146 0 0 chr1 60032239 60032294 -182632059 - MSTA LTR MaLR 0 428 374 2256 113 3 3 chr1 60032294 60032604 -182631749 - AluSx SINE Alu -2 310 1 395 282 52 107 chr1 60032604 60032856 -182631497 + L2 LINE L2 2939 3176 -96 1800 155 7 17 chr1 60032902 60033193 -182631160 + AluJo SINE Alu 1 288 -24 2963 10 0 0 chr1 60033405 60033718 -182630635 - AluYb8 SINE Alu -5 313 1 514 294 82 0 chr1 60033902 60034096 -182630257 + MIR SINE MIR 47 256 -6 954 275 63 48 chr1 60034592 60034845 -182629508 + MLT1K LTR MaLR 162 425 -163 2416 104 0 0 chr1 60034845 60035154 -182629199 - AluSx SINE Alu -3 309 1 954 275 63 48 chr1 60035154 60035297 -182629056 + MLT1K LTR MaLR 425 564 -24 2367 88 0 10 chr1 60035642 60035948 -182628405 + AluSg SINE Alu 1 303 -7 871 167 0 0 chr1 60036037 60036169 -182628184 - FLAM_C SINE Alu -11 132 1 504 241 43 0 chr1 60036178 60036294 -182628059 - MIR SINE MIR -71 191 71 355 312 54 57 chr1 60036341 60036433 -182627920 - L1ME4a LINE L1 -216 5905 5814 2160 114 3 10 chr1 60036433 60036739 -182627614 + AluSx SINE Alu 1 304 -8 355 312 54 57 chr1 60036739 60036838 -182627515 - L1ME4a LINE L1 -307 5814 5716 2098 108 52 0 chr1 60036838 60037125 -182627228 - AluSx SINE Alu -10 302 1 355 312 54 57 chr1 60037125 60037355 -182626998 - L1ME4a LINE L1 -405 5716 5484 2322 98 10 0 chr1 60037561 60037866 -182626487 + AluSq SINE Alu 1 308 -5 2491 85 0 3 chr1 60037873 60038180 -182626173 + AluSc SINE Alu 2 307 -2 522 254 38 88 chr1 60038254 60038304 -182626049 + L1MC4a LINE L1 5779 5830 -1978 2183 126 7 10 chr1 60038304 60038613 -182625740 + AluSx SINE Alu 1 308 -4 522 254 38 88 chr1 60038613 60038736 -182625617 + L1MC4a LINE L1 5830 5958 -1850 2346 107 3 0 chr1 60038736 60039068 -182625285 + AluSx SINE Alu 1 312 0 1706 181 13 7 chr1 60039070 60039373 -182624980 + AluJo SINE Alu 1 305 -7 522 254 38 88 chr1 60039373 60039435 -182624918 + L1MC4a LINE L1 5959 6006 -1802 2065 147 0 3 chr1 60039741 60040053 -182624300 - AluSq SINE Alu -2 311 1 2491 66 3 13 chr1 60040066 60040236 -182624117 - AluY SINE Alu -9 302 135 2537 63 0 7 chr1 60040236 60040537 -182623816 - AluY SINE Alu -11 300 2 2491 66 3 13 chr1 60040537 60040667 -182623686 - AluY SINE Alu -176 135 5 2315 96 0 19 chr1 60041427 60041739 -182622614 - AluSg SINE Alu -4 306 1 2392 102 0 0 chr1 60041741 60042046 -182622307 - AluSx SINE Alu -7 305 1 228 337 0 11 chr1 60042047 60042139 -182622214 - LTR67 LTR ERVL -10 547 457 2187 97 3 21 chr1 60042232 60042562 -182621791 - AluSq SINE Alu 0 325 1 2309 87 3 16 chr1 60042593 60042903 -182621450 + AluSx SINE Alu 1 306 -6 1151 139 12 0 chr1 60042903 60043068 -182621285 + AluSg/x SINE Alu 134 300 -12 329 262 25 25 chr1 60043431 60043553 -182620800 + LTR16C LTR ERVL 368 489 -2 2199 103 3 3 chr1 60043562 60043854 -182620499 + AluSx SINE Alu 1 292 -20 378 310 147 46 chr1 60044096 60044448 -182619905 + L2 LINE L2 2326 2750 -564 1917 146 0 83 chr1 60044448 60044606 -182619747 + AluJb SINE Alu 1 118 -194 297 51 0 0 chr1 60044606 60044645 -182619708 + (CA)n Simple_repeat Simple_repeat 2 40 0 1917 146 0 83 chr1 60044645 60044822 -182619531 + AluJb SINE Alu 118 308 -4 378 310 147 46 chr1 60044822 60044992 -182619361 + L2 LINE L2 2750 2901 -413 597 271 92 32 chr1 60045158 60045439 -182618914 - MLT1L LTR MaLR -153 462 165 2337 109 0 10 chr1 60045496 60045672 -182618681 - AluSq SINE Alu -4 309 136 2476 84 0 7 chr1 60045672 60045982 -182618371 - AluY SINE Alu -3 308 1 2337 109 0 10 chr1 60045982 60046117 -182618236 - AluSq SINE Alu -177 136 1 352 221 76 92 chr1 60046207 60046338 -182618015 + L2 LINE L2 3136 3264 -8 1833 157 3 29 chr1 60046358 60046671 -182617682 + AluJb SINE Alu 1 305 -7 701 221 0 21 chr1 60046683 60046828 -182617525 + FLAM_C SINE Alu 2 143 0 2179 115 3 16 chr1 60046836 60047149 -182617204 - AluSx SINE Alu -3 309 1 309 266 84 59 chr1 60047154 60047427 -182616926 - L1ME4a LINE L1 -206 5915 5660 1218 180 126 20 chr1 60047559 60047814 -182616539 + AluJo SINE Alu 1 282 -30 50 18 0 0 chr1 60047814 60047871 -182616482 + AT_rich Low_complexity Low_complexity 1 57 0 2179 110 0 0 chr1 60047883 60048201 -182616152 + AluSg SINE Alu 1 318 0 1121 143 6 17 chr1 60048201 60048376 -182615977 + AluJb SINE Alu 133 305 -7 1569 244 110 32 chr1 60048376 60048595 -182615758 + MLT1G LTR MaLR 11 211 -379 2507 75 0 7 chr1 60048595 60048900 -182615453 - AluSx SINE Alu -9 303 1 1569 244 110 32 chr1 60048900 60049218 -182615135 + MLT1G LTR MaLR 211 590 0 2362 76 10 0 chr1 60049253 60049542 -182614811 + AluSx SINE Alu 1 292 -20 876 271 36 68 chr1 60049748 60049964 -182614389 - LTR16A LTR ERVL 0 450 229 1994 169 0 0 chr1 60049964 60050266 -182614087 + AluJb SINE Alu 1 302 -10 2172 132 3 0 chr1 60050274 60050570 -182613783 + AluSx SINE Alu 1 297 -15 876 271 36 68 chr1 60050570 60050804 -182613549 - LTR16A LTR ERVL -228 222 1 1070 185 0 0 chr1 60051037 60051215 -182613138 - AluSq SINE Alu -2 311 134 2280 94 0 3 chr1 60051215 60051513 -182612840 - AluY SINE Alu -12 299 3 351 357 60 47 chr1 60051543 60051944 -182612409 - ERVL LTR ERVL -503 5261 4856 293 323 47 24 chr1 60051987 60052114 -182612239 - LTR16A1 LTR ERVL -327 130 1 2235 95 0 20 chr1 60052240 60052534 -182611819 + AluSx SINE Alu 23 310 -2 515 257 49 21 chr1 60053837 60053981 -182610372 + MIR SINE MIR 33 180 -82 2214 107 0 0 chr1 60054005 60054313 -182610040 + AluSx SINE Alu 6 313 0 752 153 0 17 chr1 60054320 60054438 -182609915 + FLAM_C SINE Alu 2 117 -26 2518 84 0 0 chr1 60054448 60054759 -182609594 - AluY SINE Alu 0 311 1 1367 162 27 120 chr1 60054761 60054948 -182609405 - AluYb8 SINE Alu -15 303 159 525 32 0 0 chr1 60054948 60055011 -182609342 + (TG)n Simple_repeat Simple_repeat 2 64 0 1367 162 27 120 chr1 60055011 60055157 -182609196 - AluYb8 SINE Alu -159 159 1 2413 98 0 0 chr1 60055234 60055530 -182608823 + AluSc SINE Alu 1 296 -13 1977 163 0 10 chr1 60055605 60055918 -182608435 - AluSx SINE Alu -2 310 1 244 0 56 0 chr1 60055918 60055954 -182608399 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2136 114 4 0 chr1 60055954 60056235 -182608118 - AluSx SINE Alu -29 283 2 22 35 0 0 chr1 60056235 60056264 -182608089 + AT_rich Low_complexity Low_complexity 1 29 0 472 156 300 0 chr1 60056269 60056359 -182607994 - FLAM_C SINE Alu -16 117 1 2461 58 0 23 chr1 60056575 60056883 -182607470 + AluY SINE Alu 1 301 -10 351 308 11 22 chr1 60057130 60057312 -182607041 + GA-rich Low_complexity Low_complexity 1 180 0 589 271 33 0 chr1 60057312 60057434 -182606919 - L2 LINE L2 -4 3309 3184 219 231 44 22 chr1 60057503 60057594 -182606759 + (CAGAGA)n Simple_repeat Simple_repeat 4 96 0 194 182 0 0 chr1 60057888 60057921 -182606432 - MIR SINE MIR -62 146 114 427 332 68 16 chr1 60058692 60058950 -182605403 + L2 LINE L2 2794 3065 -207 2220 107 0 3 chr1 60059351 60059642 -182604711 + AluSx SINE Alu 1 290 -22 242 323 26 91 chr1 60059905 60060137 -182604216 + L2 LINE L2 3026 3242 -30 602 295 74 18 chr1 60060142 60060359 -182603994 - L2 LINE L2 -480 2834 2606 306 338 126 44 chr1 60060486 60060779 -182603574 - L2 LINE L2 -878 2436 2120 367 153 35 110 chr1 60060975 60061124 -182603229 + MLT1J2 LTR MaLR 340 448 -2 243 286 38 23 chr1 60061125 60061258 -182603095 - L2 LINE L2 -1194 2120 1986 321 229 19 76 chr1 60061358 60061374 -182602979 - L1MB7 LINE L1 0 6184 6169 2232 107 0 3 chr1 60061374 60061664 -182602689 + AluSg SINE Alu 1 289 -21 321 229 19 76 chr1 60061664 60061804 -182602549 - L1MB7 LINE L1 -15 6169 6037 2068 156 14 8 chr1 60061665 60062023 -182602330 - L1MB3 LINE L1 -8 6175 5816 1158 118 0 17 chr1 60062027 60062205 -182602148 - AluSg/x SINE Alu -1 309 135 2344 67 0 0 chr1 60062478 60062776 -182601577 - AluY SINE Alu -12 299 2 500 111 0 0 chr1 60062805 60062877 -182601476 - AluJ/FLAM SINE Alu -236 76 5 2102 121 0 0 chr1 60062893 60063190 -182601163 - AluSg SINE Alu -13 297 1 315 295 62 0 chr1 60063585 60063714 -182600639 - MIR SINE MIR -66 196 60 196 305 130 81 chr1 60064255 60064478 -182599875 - L2 LINE L2 -52 3220 2987 405 250 103 9 chr1 60064502 60064618 -182599735 + L2 LINE L2 3186 3312 -1 271 268 100 118 chr1 60064937 60065217 -182599136 - L2 LINE L2 -49 3223 2949 199 350 20 20 chr1 60065664 60065764 -182598589 - MIR3 SINE MIR -1 207 108 252 0 0 0 chr1 60066610 60066638 -182597715 + (A)n Simple_repeat Simple_repeat 1 28 0 253 297 16 44 chr1 60067398 60067580 -182596773 + G-rich Low_complexity Low_complexity 4 180 0 23 0 0 0 chr1 60067877 60067900 -182596453 + GC_rich Low_complexity Low_complexity 1 23 0 258 32 0 0 chr1 60067999 60068030 -182596323 + (CGG)n Simple_repeat Simple_repeat 3 33 0 191 152 22 0 chr1 60068063 60068109 -182596244 + (CGGG)n Simple_repeat Simple_repeat 1 47 0 183 42 0 0 chr1 60068253 60068277 -182596076 + (CGAG)n Simple_repeat Simple_repeat 3 26 0 228 67 0 0 chr1 60068321 60068351 -182596002 + (CGG)n Simple_repeat Simple_repeat 3 32 0 22 0 0 0 chr1 60068455 60068477 -182595876 + GC_rich Low_complexity Low_complexity 1 22 0 223 93 47 0 chr1 60068478 60068521 -182595832 + (CGGG)n Simple_repeat Simple_repeat 4 48 0 267 329 136 13 chr1 60072091 60072246 -182592107 + MIR SINE MIR 89 262 0 236 53 26 0 chr1 60072984 60073022 -182591331 + (TG)n Simple_repeat Simple_repeat 1 39 0 472 312 95 27 chr1 60074867 60075088 -182589265 - MIR SINE MIR -10 252 17 487 221 84 8 chr1 60076175 60076306 -182588047 - MIR3 SINE MIR -52 156 16 2380 78 0 3 chr1 60078168 60078477 -182585876 - AluSg SINE Alu -2 308 1 300 309 47 27 chr1 60078615 60078764 -182585589 + MIR SINE MIR 49 200 -62 194 303 103 62 chr1 60078972 60079117 -182585236 + MIR3 SINE MIR 2 152 -56 2397 62 0 3 chr1 60079385 60079692 -182584661 + AluY SINE Alu 1 306 -5 450 250 52 52 chr1 60080239 60080328 -182584025 + MIR SINE MIR 71 159 -103 2127 120 0 0 chr1 60080328 60080629 -182583724 + AluSx SINE Alu 1 301 -11 450 250 52 52 chr1 60080629 60080731 -182583622 + MIR SINE MIR 158 262 0 760 189 8 0 chr1 60080747 60080879 -182583474 - AluJo SINE Alu -178 134 2 213 348 0 22 chr1 60081561 60081650 -182582703 + L2 LINE L2 3137 3223 -49 338 245 131 55 chr1 60081783 60082020 -182582333 - MER112 DNA MER1_type 0 256 2 279 299 115 40 chr1 60082027 60082201 -182582152 + MIR SINE MIR 41 227 -35 199 200 0 25 chr1 60084169 60084209 -182580144 - MIR SINE MIR -6 256 218 602 236 60 11 chr1 60084289 60084471 -182579882 - MIR SINE MIR 0 262 72 1761 115 6 70 chr1 60084498 60084811 -182579542 - AluJb SINE Alu -19 293 1 253 303 109 8 chr1 60085762 60085881 -182578472 + MIR SINE MIR 16 146 -62 575 301 84 18 chr1 60085916 60086142 -182578211 - MIR SINE MIR -3 259 19 880 130 162 0 chr1 60087550 60087704 -182576649 + FAM SINE Alu 1 44 -5 389 274 91 46 chr1 60088491 60088666 -182575687 + MIR SINE MIR 21 203 -59 326 316 37 22 chr1 60089713 60089849 -182574504 + L2 LINE L2 2909 3046 -226 2428 71 0 0 chr1 60090255 60090563 -182573790 - AluY SINE Alu -3 308 1 2181 105 3 16 chr1 60090981 60091296 -182573057 - AluSx SINE Alu -1 311 1 2185 113 3 0 chr1 60091301 60091684 -182572669 - AluSp SINE Alu 0 384 1 919 143 0 0 chr1 60092013 60092146 -182572207 + FLAM_C SINE Alu 1 133 0 2118 125 0 0 chr1 60092173 60092476 -182571877 - AluSx SINE Alu -9 303 1 2142 117 0 3 chr1 60092976 60093285 -182571068 - AluSc SINE Alu -1 308 1 1135 178 163 42 chr1 60093285 60093549 -182570804 - AluJo SINE Alu -6 296 1 197 267 154 42 chr1 60096856 60096986 -182567367 + MIR SINE MIR 33 173 -67 210 150 0 0 chr1 60098174 60098214 -182566139 + (CA)n Simple_repeat Simple_repeat 2 41 0 320 196 10 59 chr1 60098360 60098462 -182565891 + CT-rich Low_complexity Low_complexity 2 98 0 225 0 0 0 chr1 60099026 60099051 -182565302 + (CATG)n Simple_repeat Simple_repeat 3 27 0 1998 138 0 10 chr1 60100601 60100906 -182563447 - AluJb SINE Alu -10 302 1 189 254 32 0 chr1 60101016 60101079 -182563274 - MIR3 SINE MIR -40 168 104 320 333 18 0 chr1 60101494 60101605 -182562748 + MIR SINE MIR 36 148 -60 193 281 163 22 chr1 60101889 60102024 -182562329 - L2 LINE L2 -165 3107 2954 643 269 81 14 chr1 60102066 60102289 -182562064 - MIR SINE MIR -1 261 24 229 293 40 0 chr1 60102341 60102416 -182561937 + MIR SINE MIR 72 149 -113 440 323 60 18 chr1 60103889 60104056 -182560297 - MER117 DNA MER1_type -4 193 20 306 268 37 0 chr1 60105690 60105772 -182558581 + MER103 DNA DNA 42 126 -40 2083 92 44 0 chr1 60106074 60106368 -182557985 - AluSx SINE Alu -5 307 1 270 279 0 0 chr1 60106478 60106557 -182557796 - L1ME LINE L1 -374 5747 5669 359 319 46 46 chr1 60107304 60107520 -182556833 - MIR SINE MIR -32 230 15 260 213 59 118 chr1 60107918 60108054 -182556299 + MIR SINE MIR 75 202 -60 897 255 37 16 chr1 60108326 60108569 -182555784 - MIR SINE MIR -11 251 4 237 275 168 23 chr1 60109894 60110025 -182554328 + MIR3 SINE MIR 19 168 -40 1202 191 14 18 chr1 60110084 60110304 -182554049 - MER58A DNA MER1_type -1 223 5 354 269 81 66 chr1 60113250 60113287 -182551066 - MIR SINE MIR -43 219 184 1722 165 0 33 chr1 60113287 60113590 -182550763 - AluJo SINE Alu -19 293 1 354 269 81 66 chr1 60113590 60113749 -182550604 - MIR SINE MIR -78 184 20 215 323 71 24 chr1 60113855 60113982 -182550371 - MIR3 SINE MIR -3 205 73 259 250 176 19 chr1 60113988 60114096 -182550257 - L2 LINE L2 -4 3309 3185 254 257 0 29 chr1 60114323 60114393 -182549960 - L2 LINE L2 -18 3295 3228 200 194 0 0 chr1 60114964 60115000 -182549353 + L3 LINE CR1 1531 1566 -11 370 183 42 0 chr1 60115021 60115092 -182549261 - L3 LINE CR1 -108 1469 1396 198 0 0 0 chr1 60115157 60115179 -182549174 + (T)n Simple_repeat Simple_repeat 1 22 0 195 267 0 0 chr1 60115304 60115349 -182549004 - L3 LINE CR1 -454 1123 1079 196 279 15 15 chr1 60115747 60115815 -182548538 - MIR3 SINE MIR -37 171 104 204 91 0 30 chr1 60116197 60116230 -182548123 + MIR SINE MIR 217 248 -14 759 197 0 0 chr1 60116640 60116767 -182547586 - FLAM_A SINE Alu -6 127 1 2070 128 3 3 chr1 60118738 60119043 -182545310 + AluSx SINE Alu 1 305 -7 203 220 40 0 chr1 60119203 60119253 -182545100 - L2 LINE L2 0 3272 3221 330 264 98 37 chr1 60120344 60120507 -182543846 + MIR3 SINE MIR 12 184 -24 799 189 0 0 chr1 60122241 60122373 -182541980 - FLAM_A SINE Alu -1 132 1 184 340 106 0 chr1 60122983 60123077 -182541276 - MIR SINE MIR -57 205 102 1787 117 42 11 chr1 60123261 60123544 -182540809 + AluJo SINE Alu 1 292 -20 360 280 16 40 chr1 60124085 60124210 -182540143 - MIR SINE MIR -74 188 67 474 223 33 25 chr1 60125027 60125148 -182539205 - L2 LINE L2 -12 3301 3180 310 319 29 29 chr1 60125230 60125368 -182538985 - MIR SINE MIR -31 231 94 24 0 0 0 chr1 60126123 60126147 -182538206 + GC_rich Low_complexity Low_complexity 1 24 0 1344 222 65 8 chr1 60126434 60126786 -182537567 - MLT1C LTR MaLR -2 465 94 256 233 110 55 chr1 60126796 60126869 -182537484 - MER2 DNA MER2_type -1 344 268 748 181 0 0 chr1 60126888 60127004 -182537349 + FLAM_C SINE Alu 2 117 -26 763 174 4 170 chr1 60127035 60127120 -182537233 - MER2 DNA MER2_type -139 206 109 1575 158 0 23 chr1 60127120 60127385 -182536968 + AluJo SINE Alu 1 259 -53 763 174 4 170 chr1 60127385 60127546 -182536807 - MER2 DNA MER2_type -236 109 1 2358 85 0 3 chr1 60127548 60127855 -182536498 - AluY SINE Alu -5 306 1 411 191 34 0 chr1 60127859 60127948 -182536405 - MLT1C LTR MaLR -375 92 1 1799 133 34 17 chr1 60128046 60128212 -182536141 - AluSx SINE Alu -13 299 124 1984 98 6 70 chr1 60128212 60128528 -182535825 - AluSx SINE Alu -16 296 1 1799 133 34 17 chr1 60128528 60128655 -182535698 - AluSx SINE Alu -188 124 1 758 194 0 0 chr1 60129524 60129648 -182534705 - FLAM_C SINE Alu -9 134 11 496 276 90 13 chr1 60130987 60131143 -182533210 - MIR SINE MIR -71 191 24 282 316 41 41 chr1 60131617 60131788 -182532565 - MIR3 SINE MIR -35 173 3 459 252 119 60 chr1 60132415 60132633 -182531720 + L2 LINE L2 2851 3081 -191 227 339 27 18 chr1 60133099 60133211 -182531142 - MIR3 SINE MIR -15 193 81 265 327 124 18 chr1 60133349 60133462 -182530891 - MIR SINE MIR -68 140 16 2048 123 10 3 chr1 60134448 60134757 -182529596 - AluSq SINE Alu -2 311 1 544 312 135 0 chr1 60134812 60135027 -182529326 - MIR SINE MIR -14 248 5 212 341 96 7 chr1 60135963 60136098 -182528255 - L2 LINE L2 -2 3311 3165 765 168 0 8 chr1 60136422 60136541 -182527812 - FLAM_C SINE Alu -15 118 1 2121 100 23 13 chr1 60136593 60136902 -182527451 + AluSx SINE Alu 1 312 0 540 277 57 17 chr1 60138256 60138433 -182525920 - MIR3 SINE MIR -7 201 18 588 289 81 21 chr1 60139434 60139669 -182524684 + L3 LINE CR1 782 1030 -547 559 277 60 0 chr1 60139699 60139883 -182524470 - MIR SINE MIR -48 214 20 2141 82 0 4 chr1 60139993 60140316 -182524037 - AluSc SINE Alu 0 322 1 1379 213 31 0 chr1 60140318 60140605 -182523748 - AluJo SINE Alu -16 296 1 757 214 198 0 chr1 60140612 60140799 -182523554 - MIR SINE MIR -11 251 28 356 148 24 21 chr1 60140801 60140913 -182523440 - Alu SINE Alu -250 52 1 220 271 0 0 chr1 60141434 60141482 -182522871 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 234 296 0 15 chr1 60141755 60141841 -182522512 - MIR SINE MIR -78 130 49 295 246 127 32 chr1 60141864 60141990 -182522363 - MIR3 SINE MIR -41 167 30 514 281 29 12 chr1 60142223 60142394 -182521959 + MIR3 SINE MIR 13 186 -22 182 287 110 43 chr1 60143826 60143990 -182520363 + L3 LINE CR1 1262 1436 -141 235 282 106 0 chr1 60144312 60144397 -182519956 + MER94 DNA DNA 1 94 -40 382 258 8 70 chr1 60145894 60146022 -182518331 - MIR3 SINE MIR -50 158 39 188 83 0 56 chr1 60146795 60146831 -182517522 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 486 0 0 0 chr1 60147116 60147170 -182517183 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 205 302 48 0 chr1 60149237 60149300 -182515053 + MIR3 SINE MIR 120 185 -23 573 307 38 14 chr1 60150231 60150443 -182513910 + MIR SINE MIR 34 250 -12 254 336 60 0 chr1 60152778 60152912 -182511441 - MIR SINE MIR -18 244 103 235 314 47 0 chr1 60153076 60153162 -182511191 + MIR3 SINE MIR 73 162 -46 210 374 51 26 chr1 60153383 60153578 -182510775 + L2 LINE L2 2884 3083 -189 321 185 0 31 chr1 60153590 60153655 -182510698 - L2 LINE L2 -1 3312 3250 1892 99 31 17 chr1 60153872 60154164 -182510189 + AluY SINE Alu 9 304 -7 196 356 69 0 chr1 60154338 60154439 -182509914 + L2 LINE L2 3137 3244 -28 1788 149 17 0 chr1 60155473 60155762 -182508591 - AluJb SINE Alu -18 294 1 387 267 77 81 chr1 60155820 60155932 -182508421 - L1ME LINE L1 -346 5775 5664 1617 231 48 8 chr1 60155932 60156283 -182508070 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr1 60156284 60156304 -182508049 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2534 10 0 7 chr1 60156305 60156660 -182507693 - AluYb8 SINE Alu 0 353 1 2056 103 10 7 chr1 60156662 60156953 -182507400 - AluY SINE Alu -17 294 3 387 267 77 81 chr1 60156953 60157053 -182507300 - L1ME LINE L1 -458 5663 5556 1739 168 0 7 chr1 60157056 60157348 -182507005 + AluJo SINE Alu 1 290 -22 311 188 0 0 chr1 60157359 60157407 -182506946 + Alu SINE Alu 234 281 -21 23 0 0 0 chr1 60157407 60157430 -182506923 + AT_rich Low_complexity Low_complexity 1 23 0 209 235 0 74 chr1 60158210 60158291 -182506062 - L3 LINE CR1 -103 1474 1400 2266 80 10 3 chr1 60158954 60159254 -182505099 + AluSx SINE Alu 1 302 -10 760 133 0 17 chr1 60159456 60159576 -182504777 + FLAM_A SINE Alu 25 142 0 180 0 0 0 chr1 60159977 60159997 -182504356 + (A)n Simple_repeat Simple_repeat 1 20 0 1920 85 8 0 chr1 60160462 60160710 -182503643 - AluSq SINE Alu -63 250 1 762 192 42 48 chr1 60160710 60160869 -182503484 - AluJo/FRAM SINE Alu -6 296 137 1893 122 0 51 chr1 60164223 60164399 -182499954 - AluSx SINE Alu -3 309 154 2462 63 0 0 chr1 60164399 60164698 -182499655 - AluY SINE Alu -12 299 1 1893 122 0 51 chr1 60164698 60164832 -182499521 - AluSx SINE Alu -158 154 15 212 247 27 27 chr1 60164940 60164953 -182499400 - L2 LINE L2 -55 3258 3246 4279 77 36 0 chr1 60164953 60165487 -182498866 - MER41A LTR ERV1 0 554 2 212 247 27 27 chr1 60165487 60165546 -182498807 - L2 LINE L2 -66 3247 3186 343 131 66 0 chr1 60166206 60166267 -182498086 - AluJo SINE Alu -167 135 71 788 117 45 0 chr1 60167261 60167372 -182496981 + FLAM_C SINE Alu 2 117 -16 189 262 0 0 chr1 60167648 60167690 -182496663 - L2 LINE L2 -18 3295 3254 1217 256 39 10 chr1 60169047 60169359 -182494994 - MER33 DNA MER1_type 0 324 4 246 299 62 10 chr1 60169483 60169580 -182494773 + MIR SINE MIR 161 262 0 193 263 194 94 chr1 60170105 60170265 -182494088 + MIR3 SINE MIR 23 198 -10 454 299 76 25 chr1 60170325 60170482 -182493871 - L2 LINE L2 0 3313 3149 1418 112 42 5 chr1 60170485 60170699 -182493654 + AluSg/x SINE Alu 80 301 -11 183 237 68 17 chr1 60170826 60170885 -182493468 - L2 LINE L2 -93 3220 3159 221 286 95 0 chr1 60171877 60171961 -182492392 + MIR SINE MIR 105 196 -66 183 298 21 0 chr1 60172531 60172578 -182491775 - L2 LINE L2 -11 3302 3255 270 0 0 0 chr1 60174057 60174087 -182490266 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 250 16 31 chr1 60175137 60175201 -182489152 + MER5B DNA MER1_type 113 175 -3 2292 87 0 3 chr1 60175370 60175670 -182488683 - AluSx SINE Alu -13 299 1 258 296 99 40 chr1 60175911 60176063 -182488290 + MIR SINE MIR 32 192 -70 348 277 66 36 chr1 60176272 60176409 -182487944 - MIR SINE MIR -10 252 112 2284 91 0 19 chr1 60178811 60179163 -182485190 - AluSx SINE Alu 0 346 1 194 289 0 62 chr1 60179313 60179410 -182484943 - L2 LINE L2 -249 3023 2933 240 258 21 54 chr1 60180597 60180690 -182483663 - MIR SINE MIR -55 153 64 208 273 0 18 chr1 60180759 60180814 -182483539 + MIR SINE MIR 28 81 -181 204 40 0 0 chr1 60182068 60182093 -182482260 + (TG)n Simple_repeat Simple_repeat 2 26 0 339 287 0 54 chr1 60182885 60183014 -182481339 + MIR SINE MIR 5 126 -82 228 225 62 12 chr1 60183328 60183408 -182480945 + L2 LINE L2 2976 3059 -213 2036 75 4 11 chr1 60183968 60184247 -182480106 - AluY SINE Alu 0 311 35 299 211 92 0 chr1 60184310 60184386 -182479967 + MIR SINE MIR 69 151 -111 201 314 22 80 chr1 60184938 60185075 -182479278 - L3 LINE CR1 -227 1350 1222 359 276 0 19 chr1 60187042 60187147 -182477206 - MIR3 SINE MIR -28 180 78 34 24 0 0 chr1 60187483 60187524 -182476829 + AT_rich Low_complexity Low_complexity 1 41 0 1556 172 0 4 chr1 60188249 60188510 -182475843 + AluJo SINE Alu 1 260 -52 43 0 0 0 chr1 60188521 60188564 -182475789 + AT_rich Low_complexity Low_complexity 1 43 0 719 126 118 0 chr1 60188784 60188903 -182475450 + FLAM_C SINE Alu 1 133 0 237 331 66 34 chr1 60189474 60189642 -182474711 - MIR SINE MIR -56 152 19 2166 113 0 10 chr1 60189722 60190033 -182474320 - AluSq SINE Alu -5 308 1 288 0 0 0 chr1 60190944 60190976 -182473377 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1343 152 5 0 chr1 60190992 60191203 -182473150 - AluJo SINE Alu -100 212 1 468 318 123 23 chr1 60192515 60192776 -182471577 + L3 LINE CR1 1255 1541 -36 221 203 38 63 chr1 60193883 60193962 -182470391 + MIR3 SINE MIR 82 158 -50 189 263 0 0 chr1 60194710 60194748 -182469605 + L2 LINE L2 3221 3258 -14 560 258 0 0 chr1 60194907 60195035 -182469318 + MIR3 SINE MIR 66 193 -15 322 246 98 16 chr1 60195439 60195561 -182468792 - MIR3 SINE MIR -70 138 7 408 326 112 11 chr1 60195676 60195854 -182468499 + MER117 DNA MER1_type 2 197 0 201 250 33 0 chr1 60195854 60195914 -182468439 - MIR3 SINE MIR -48 160 99 193 390 91 0 chr1 60196132 60196319 -182468034 - L2 LINE L2 -432 2882 2679 2303 76 13 0 chr1 60196384 60196687 -182467666 - AluSx SINE Alu -5 307 1 332 316 117 34 chr1 60197121 60197387 -182466966 + L3 LINE CR1 1190 1477 -100 256 302 82 49 chr1 60197881 60198209 -182466144 - L2 LINE L2 -82 3190 2852 203 212 15 91 chr1 60198687 60198753 -182465600 - MIR SINE MIR -90 172 112 278 222 68 34 chr1 60199223 60199340 -182465013 + MIR SINE MIR 33 153 -55 202 273 0 0 chr1 60199661 60199705 -182464648 + (CGTG)n Simple_repeat Simple_repeat 3 46 0 21 0 0 0 chr1 60200516 60200537 -182463816 + AT_rich Low_complexity Low_complexity 1 21 0 2033 148 3 0 chr1 60200949 60201260 -182463093 + AluSx SINE Alu 1 312 0 271 262 158 77 chr1 60201416 60201599 -182462754 + MIR SINE MIR 9 206 -56 1563 153 28 21 chr1 60201609 60201897 -182462456 + AluJo SINE Alu 1 290 -22 369 322 0 8 chr1 60202141 60202262 -182462091 + MIR SINE MIR 89 208 -54 186 271 21 0 chr1 60203556 60203604 -182460749 + MIR SINE MIR 92 140 -68 787 157 0 0 chr1 60204990 60205105 -182459248 + FLAM_A SINE Alu 4 118 -15 196 367 36 22 chr1 60205395 60205534 -182458819 + L2 LINE L2 2921 3061 -211 188 330 0 44 chr1 60206299 60206390 -182457963 + MIR SINE MIR 103 189 -73 551 169 265 7 chr1 60206478 60206614 -182457739 - MER58B DNA MER1_type 0 341 171 212 286 0 0 chr1 60206819 60206875 -182457478 + MIR SINE MIR 88 143 -65 217 87 22 22 chr1 60207666 60207712 -182456641 + (CA)n Simple_repeat Simple_repeat 2 47 0 1754 154 17 3 chr1 60208698 60208997 -182455356 - AluJb SINE Alu -9 303 1 285 89 0 0 chr1 60209003 60209048 -182455305 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 185 305 116 11 chr1 60209552 60209647 -182454706 - MIR SINE MIR -112 150 46 197 369 50 7 chr1 60210222 60210363 -182453990 + MIR3 SINE MIR 3 149 -59 381 325 119 0 chr1 60210671 60210831 -182453522 + MIR SINE MIR 29 207 -55 192 97 0 0 chr1 60210893 60210924 -182453429 - MIR SINE MIR -184 78 48 226 337 61 33 chr1 60213592 60213773 -182450580 + MER112 DNA MER1_type 21 206 -54 488 267 75 25 chr1 60214027 60214188 -182450165 + MIR SINE MIR 26 194 -68 183 238 79 0 chr1 60214393 60214456 -182449897 + L2 LINE L2 3133 3200 -72 2076 109 3 13 chr1 60216924 60217227 -182447126 - AluSx SINE Alu -12 300 1 220 200 20 0 chr1 60217400 60217428 -182446925 - MIR SINE MIR -69 139 111 181 248 294 0 chr1 60217428 60217537 -182446816 + MIR3 SINE MIR 2 142 -66 21 0 0 0 chr1 60217848 60217869 -182446484 + GC_rich Low_complexity Low_complexity 1 21 0 2205 120 7 0 chr1 60217887 60218196 -182446157 + AluSx SINE Alu 1 311 -1 2057 127 3 16 chr1 60219526 60219842 -182444511 + AluJo SINE Alu 1 312 0 300 167 0 147 chr1 60221822 60221924 -182442429 + MIR SINE MIR 60 146 -62 258 306 0 0 chr1 60223126 60223198 -182441155 + MIR SINE MIR 111 182 -80 63 26 0 0 chr1 60223248 60223325 -182441028 + AT_rich Low_complexity Low_complexity 1 77 0 1528 150 135 0 chr1 60223331 60223605 -182440748 - AluSx SINE Alu -1 311 1 192 388 58 0 chr1 60224539 60224642 -182439711 + MIR SINE MIR 103 211 -51 259 283 50 50 chr1 60226200 60226320 -182438033 + MIR3 SINE MIR 60 179 -29 260 231 146 31 chr1 60226605 60226735 -182437618 + L3 LINE CR1 1360 1504 -73 189 311 47 75 chr1 60226849 60226939 -182437414 - MIR SINE MIR -52 210 124 337 322 136 14 chr1 60226939 60227153 -182437200 + MIR SINE MIR 2 241 -21 182 314 67 57 chr1 60227160 60227265 -182437088 - MIR SINE MIR -155 107 2 429 398 69 9 chr1 60227617 60227848 -182436505 + MIR SINE MIR 15 259 -3 237 265 95 130 chr1 60227980 60228350 -182436003 - L2 LINE L2 -22 3250 2894 1797 147 0 71 chr1 60228471 60228616 -182435737 + AluJo SINE Alu 1 112 -200 2153 105 7 0 chr1 60228616 60228911 -182435442 + AluSq SINE Alu 1 297 -16 1797 147 0 71 chr1 60228911 60229091 -182435262 + AluJo SINE Alu 112 303 -9 282 275 43 58 chr1 60229788 60229926 -182434427 + MIR SINE MIR 17 152 -56 767 252 14 50 chr1 60229952 60230042 -182434311 - MIR SINE MIR -15 247 155 2263 107 0 0 chr1 60230042 60230350 -182434003 - AluSx SINE Alu -4 308 1 767 252 14 50 chr1 60230350 60230477 -182433876 - MIR SINE MIR -107 155 38 2217 105 10 0 chr1 60232545 60232841 -182431512 - AluSx SINE Alu -13 299 1 402 115 0 0 chr1 60232909 60232970 -182431383 + (CA)n Simple_repeat Simple_repeat 1 61 0 702 163 0 57 chr1 60236443 60236584 -182427769 + FLAM_C SINE Alu 1 133 0 2001 139 0 16 chr1 60236597 60236906 -182427447 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr1 60237193 60237229 -182427124 + AT_rich Low_complexity Low_complexity 1 36 0 2237 84 27 0 chr1 60237270 60237569 -182426784 + AluSx SINE Alu 1 307 -5 1317 103 0 0 chr1 60237569 60237744 -182426609 + AluSg/x SINE Alu 132 306 -4 942 167 14 0 chr1 60238092 60238236 -182426117 + FRAM SINE Alu 1 146 -30 21 0 0 0 chr1 60238363 60238384 -182425969 + AT_rich Low_complexity Low_complexity 1 21 0 1017 202 19 5 chr1 60238413 60238621 -182425732 - AluJb SINE Alu -10 302 92 31 0 0 0 chr1 60238622 60238653 -182425700 + AT_rich Low_complexity Low_complexity 1 31 0 8667 24 12 245 chr1 60238653 60240431 -182423922 - SVA Other Other -1 1385 23 756 145 69 23 chr1 60240434 60240565 -182423788 - AluJo SINE Alu -175 137 1 21 36 0 0 chr1 60240569 60240597 -182423756 + AT_rich Low_complexity Low_complexity 1 28 0 629 190 78 0 chr1 60240597 60240713 -182423640 + FLAM_A SINE Alu 1 125 -8 22 0 0 0 chr1 60240784 60240806 -182423547 + AT_rich Low_complexity Low_complexity 1 22 0 4045 170 50 44 chr1 60240926 60241024 -182423329 + L1MB8 LINE L1 4906 5002 -1176 2211 112 3 6 chr1 60241024 60241337 -182423016 + AluSx SINE Alu 1 312 0 4045 170 50 44 chr1 60241337 60242505 -182421848 + L1MB8 LINE L1 5002 6169 -9 372 278 82 15 chr1 60243685 60243821 -182420532 + MIR SINE MIR 44 190 -18 1563 123 0 5 chr1 60245223 60245443 -182418910 + AluJb SINE Alu 85 303 -9 252 143 0 0 chr1 60246335 60246377 -182417976 + (A)n Simple_repeat Simple_repeat 1 42 0 615 251 111 15 chr1 60248439 60248638 -182415715 + MIR SINE MIR 40 257 -5 319 287 23 11 chr1 60250055 60250142 -182414211 - L2 LINE L2 -1 3312 3225 * 762 248 306 3 chr1 60250139 60250482 -182413871 - L2 LINE L2 -883 2431 1985 481 275 202 9 chr1 60250692 60250925 -182413428 + L2 LINE L2 2995 3272 0 359 279 63 9 chr1 60251069 60251180 -182413173 + L2 LINE L2 3138 3254 -18 240 370 47 16 chr1 60251147 60251274 -182413079 + L3 LINE CR1 540 670 -907 * 220 252 8 8 chr1 60251302 60251421 -182412932 + (TG)n Simple_repeat Simple_repeat 1 119 0 213 270 20 40 chr1 60252837 60252937 -182411416 + L2 LINE L2 2585 2682 -632 496 262 39 1 chr1 60252943 60253098 -182411255 + L1MC/D LINE L1 5599 5760 -423 332 289 35 46 chr1 60253693 60253866 -182410487 + LTR16A LTR ERVL 57 227 -223 193 267 0 0 chr1 60254032 60254077 -182410276 + MIR SINE MIR 76 120 -142 * 247 261 31 0 chr1 60254072 60254137 -182410216 + L2 LINE L2 3239 3305 -8 196 265 48 84 chr1 60254142 60254225 -182410128 + MIR SINE MIR 151 230 -32 341 307 51 15 chr1 60254452 60254589 -182409764 - MIR SINE MIR -98 164 23 256 274 43 68 chr1 60255151 60255268 -182409085 - L2 LINE L2 -2 3311 3198 193 373 29 20 chr1 60255909 60256011 -182408342 + L2 LINE L2 3101 3203 -110 245 329 27 89 chr1 60256265 60256490 -182407863 - L2 LINE L2 -214 3058 2848 421 244 112 5 chr1 60257280 60257416 -182406937 - MIR3 SINE MIR -40 168 20 406 265 136 19 chr1 60257597 60257759 -182406594 - MIR SINE MIR 0 262 82 363 253 21 0 chr1 60257802 60257897 -182406456 - MER94 DNA DNA -34 100 4 317 348 13 20 chr1 60258448 60258614 -182405739 + MIR SINE MIR 10 174 -87 534 213 25 41 chr1 60258652 60258774 -182405579 + MIR SINE MIR 72 191 -71 2061 142 0 7 chr1 60258808 60259117 -182405236 - AluSx SINE Alu -5 307 1 1061 89 0 0 chr1 60259117 60259252 -182405101 - AluSq/x SINE Alu -178 135 1 1019 179 16 21 chr1 60259256 60259446 -182404907 - MER5A DNA MER1_type 0 189 1 261 338 58 30 chr1 60259978 60260178 -182404175 + MIR SINE MIR 3 210 -52 851 210 149 20 chr1 60260655 60260850 -182403503 + MER58A DNA MER1_type 1 220 -4 1850 178 0 7 chr1 60261225 60261529 -182402824 + AluJo SINE Alu 1 302 -10 325 363 94 43 chr1 60261624 60262296 -182402057 - L2 LINE L2 -15 3257 2561 487 313 73 0 chr1 60262667 60262817 -182401536 + MIR SINE MIR 89 249 -13 871 157 0 8 chr1 60263121 60263255 -182401098 + AluJb SINE Alu 1 133 -179 2412 74 7 13 chr1 60263258 60263567 -182400786 + AluY SINE Alu 1 307 -4 267 296 86 58 chr1 60263946 60264012 -182400341 - L2 LINE L2 -211 3061 2998 777 176 12 115 chr1 60264012 60264256 -182400097 - MER20 DNA MER1_type 0 219 1 267 296 86 58 chr1 60264256 60264432 -182399921 - L2 LINE L2 -274 2998 2812 2499 74 0 22 chr1 60264445 60264757 -182399596 - AluY SINE Alu -6 305 1 355 307 80 7 chr1 60265680 60265830 -182398523 - L2 LINE L2 -4 3268 3108 2161 115 26 0 chr1 60265966 60266091 -182398262 + AluSq SINE Alu 1 121 -192 189 0 0 0 chr1 60266091 60266112 -182398241 + (CA)n Simple_repeat Simple_repeat 2 22 0 2161 115 26 0 chr1 60266112 60266290 -182398063 + AluSq SINE Alu 121 312 -1 2199 135 0 0 chr1 60266308 60266604 -182397749 + AluSx SINE Alu 1 296 -16 709 213 116 9 chr1 60266751 60266967 -182397386 - MIR SINE MIR -14 248 10 437 265 10 0 chr1 60266989 60267087 -182397266 - MIR SINE MIR -151 111 13 593 293 126 8 chr1 60267172 60267435 -182396918 - L2 LINE L2 -987 2327 2034 2327 98 0 3 chr1 60268084 60268393 -182395960 - AluSc SINE Alu 0 308 1 221 259 88 49 chr1 60268567 60268728 -182395625 + MIR SINE MIR 61 262 0 234 338 14 0 chr1 60268768 60268842 -182395511 + L3 LINE CR1 1494 1568 -9 218 272 0 76 chr1 60269384 60269476 -182394877 + MIR SINE MIR 14 98 -164 318 275 54 17 chr1 60269512 60269640 -182394713 + L1ME3A LINE L1 5941 6082 -81 1991 136 3 17 chr1 60269716 60270024 -182394329 + AluJb SINE Alu 1 304 0 193 184 61 0 chr1 60270394 60270443 -182393910 + L2 LINE L2 3204 3255 -17 304 257 100 64 chr1 60270878 60271018 -182393335 + MIR SINE MIR 1 145 -117 419 269 28 9 chr1 60271052 60271160 -182393193 - L2 LINE L2 0 3313 3204 870 135 0 0 chr1 60271510 60271643 -182392710 - FLAM_C SINE Alu 0 133 1 2343 114 3 0 chr1 60271773 60272081 -182392272 - AluSq SINE Alu -4 309 1 411 21 0 0 chr1 60272117 60272165 -182392188 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1853 144 32 14 chr1 60272180 60272477 -182391876 - AluSx SINE Alu 0 302 1 656 136 0 64 chr1 60272479 60272604 -182391749 - AluJo SINE Alu -178 134 18 494 289 62 31 chr1 60272722 60272982 -182391371 + L2 LINE L2 3046 3313 0 2254 121 3 0 chr1 60273115 60273413 -182390940 + AluSx SINE Alu 1 299 -13 562 258 135 0 chr1 60273452 60273630 -182390723 + MIR SINE MIR 60 261 -1 2328 111 0 0 chr1 60273691 60273988 -182390365 + AluSx SINE Alu 7 303 -9 300 191 21 164 chr1 60274146 60274209 -182390144 + L1MC5 LINE L1 7057 7127 -834 1819 138 4 4 chr1 60274209 60274470 -182389883 - AluSq SINE Alu -52 261 1 300 191 21 164 chr1 60274470 60274530 -182389823 + L1MC5 LINE L1 7127 7147 -814 1980 142 0 20 chr1 60274530 60274833 -182389520 + AluJb SINE Alu 1 297 -15 300 191 21 164 chr1 60274833 60274897 -182389456 + L1MC5 LINE L1 7147 7218 -743 31 0 0 0 chr1 60275029 60275060 -182389293 + AT_rich Low_complexity Low_complexity 1 31 0 647 125 27 9 chr1 60275070 60275182 -182389171 + FLAM_C SINE Alu 30 143 0 456 275 46 28 chr1 60275330 60275548 -182388805 + L1MC5 LINE L1 7292 7513 -448 968 118 0 0 chr1 60275552 60275679 -182388674 + AluJo SINE Alu 1 127 -185 251 213 40 53 chr1 60275687 60275778 -182388575 + L1MC5 LINE L1 7504 7594 -367 255 41 61 0 chr1 60275778 60275827 -182388526 + (TA)n Simple_repeat Simple_repeat 2 53 0 251 213 40 53 chr1 60275827 60275885 -182388468 + L1MC5 LINE L1 7594 7651 -310 859 186 0 6 chr1 60275887 60276043 -182388310 + AluJo SINE Alu 136 290 -22 516 249 45 64 chr1 60276072 60276337 -182388016 + L1MC5 LINE L1 7670 7929 -32 822 264 77 26 chr1 60276359 60276632 -182387721 + L2 LINE L2 3027 3313 0 342 239 9 46 chr1 60276635 60276744 -182387609 - MIR SINE MIR -62 200 96 311 324 84 22 chr1 60276749 60276974 -182387379 + MLT1K LTR MaLR 2 240 -348 2372 103 0 7 chr1 60277117 60277427 -182386926 + AluSx SINE Alu 1 308 -4 986 167 14 0 chr1 60277775 60277919 -182386434 + AluJo SINE Alu 137 282 -30 21 0 0 0 chr1 60278047 60278068 -182386285 + AT_rich Low_complexity Low_complexity 1 21 0 1055 202 19 5 chr1 60278097 60278305 -182386048 - AluJb SINE Alu -10 302 92 31 0 0 0 chr1 60278306 60278337 -182386016 + AT_rich Low_complexity Low_complexity 1 31 0 9257 24 19 226 chr1 60278337 60280055 -182384298 - SVA Other Other -1 1385 23 696 146 69 23 chr1 60280058 60280188 -182384165 - AluJo SINE Alu -175 137 2 21 36 0 0 chr1 60280193 60280221 -182384132 + AT_rich Low_complexity Low_complexity 1 28 0 580 190 78 0 chr1 60280221 60280337 -182384016 + FLAM_A SINE Alu 1 125 -8 22 0 0 0 chr1 60280408 60280430 -182383923 + AT_rich Low_complexity Low_complexity 1 22 0 2903 176 49 52 chr1 60280550 60280648 -182383705 + L1MB8 LINE L1 4906 5003 -1175 2319 112 3 6 chr1 60280648 60280961 -182383392 + AluSx SINE Alu 1 312 0 2903 176 49 52 chr1 60280961 60281876 -182382477 + L1MB8 LINE L1 5003 5905 -273 224 283 28 9 chr1 60282736 60282843 -182381510 + MIR SINE MIR 45 153 -61 286 245 122 31 chr1 60283096 60283194 -182381159 - L2 LINE L2 -30 3242 3136 522 257 97 29 chr1 60283246 60283452 -182380901 + L2 LINE L2 3094 3313 0 1852 155 0 14 chr1 60283750 60284041 -182380312 + AluJb SINE Alu 15 301 -11 2534 63 3 0 chr1 60284041 60284385 -182379968 + AluY SINE Alu 1 311 0 509 314 124 12 chr1 60284385 60284707 -182379646 - L2 LINE L2 -344 2970 2613 263 308 15 75 chr1 60284702 60284835 -182379518 + L2 LINE L2 3189 3313 0 * 359 325 95 40 chr1 60285465 60285717 -182378636 + L3 LINE CR1 1214 1479 -98 1979 133 6 48 chr1 60286036 60286351 -182378002 - AluSx SINE Alu -10 302 1 871 189 44 0 chr1 60286406 60286586 -182377767 - MER58A DNA MER1_type 0 224 37 2369 112 0 6 chr1 60286676 60286989 -182377364 + AluSx SINE Alu 1 311 -1 882 169 62 0 chr1 60287137 60287297 -182377056 + AluJb SINE Alu 135 304 -8 1454 208 57 11 chr1 60287661 60287940 -182376413 + AluSg SINE Alu 1 292 -18 221 171 24 0 chr1 60287940 60287981 -182376372 + GA-rich Low_complexity Low_complexity 1 42 0 1897 168 3 0 chr1 60288150 60288447 -182375906 + AluJb SINE Alu 1 298 -14 260 279 0 15 chr1 60288463 60288531 -182375822 + MIR3 SINE MIR 9 75 -133 238 324 46 19 chr1 60288672 60288780 -182375573 - MIR SINE MIR -121 141 31 352 296 70 0 chr1 60289500 60289642 -182374711 - MIR3 SINE MIR -15 193 42 255 268 62 21 chr1 60289696 60289793 -182374560 - MIR SINE MIR -73 189 89 2039 135 3 7 chr1 60290210 60290507 -182373846 - AluSx SINE Alu -16 296 1 372 213 0 0 chr1 60291222 60291302 -182373051 + MER116 DNA Mariner 1 80 0 226 268 155 0 chr1 60291366 60291463 -182372890 - MIR SINE MIR -78 184 73 506 322 17 6 chr1 60291899 60292073 -182372280 - MIR SINE MIR -12 250 75 230 296 91 0 chr1 60292112 60292163 -182372190 - L2 LINE L2 -9 3304 3259 2361 91 73 9 chr1 60292163 60292505 -182371848 - THE1B LTR MaLR 0 364 1 230 296 91 0 chr1 60292505 60292541 -182371812 - L2 LINE L2 -54 3259 3209 270 331 65 75 chr1 60292821 60293192 -182371161 + L2 LINE L2 2826 3192 -80 186 224 61 0 chr1 60293200 60293249 -182371104 - L2 LINE L2 0 3313 3262 869 258 86 8 chr1 60293414 60293670 -182370683 + Charlie8 DNA MER1_type 1 276 -2141 388 188 25 12 chr1 60293709 60293789 -182370564 + Charlie8 DNA MER1_type 1347 1427 -990 316 258 34 0 chr1 60293859 60293948 -182370405 + MIR SINE MIR 127 218 -44 2413 64 3 0 chr1 60294294 60294607 -182369746 - AluSp SINE Alu 0 314 1 822 283 109 3 chr1 60294873 60295202 -182369151 + L1ME4a LINE L1 5546 5909 -212 486 218 148 0 chr1 60295225 60295367 -182368986 + L1ME4a LINE L1 5959 6121 0 2193 125 0 10 chr1 60295448 60295743 -182368610 + AluSx SINE Alu 1 292 -20 355 318 29 0 chr1 60295753 60295923 -182368430 - L1ME4a LINE L1 0 6121 5947 343 283 100 0 chr1 60295960 60296080 -182368273 - MIR SINE MIR 0 262 131 1743 140 34 4 chr1 60296364 60296629 -182367724 - AluJb SINE Alu -39 273 1 353 328 89 11 chr1 60296862 60297042 -182367311 - L2 LINE L2 -3 3269 3076 932 164 33 0 chr1 60297252 60297430 -182366923 - AluJb SINE Alu 0 312 134 304 268 49 78 chr1 60297430 60297572 -182366781 - MIR SINE MIR -48 214 77 2301 65 4 0 chr1 60297677 60297953 -182366400 - AluY SINE Alu -12 299 23 2173 120 31 0 chr1 60298046 60298337 -182366016 - AluSx SINE Alu -12 300 1 556 274 108 43 chr1 60298406 60298683 -182365670 + L3 LINE CR1 1206 1500 -77 297 247 74 43 chr1 60299289 60299451 -182364902 - MIR SINE MIR -94 168 2 280 305 68 25 chr1 60299526 60299644 -182364709 + L2 LINE L2 3141 3263 -9 821 229 60 5 chr1 60300534 60300752 -182363601 - MIR SINE MIR -14 248 19 309 357 57 4 chr1 60301211 60301438 -182362915 + L2 LINE L2 2827 3065 -207 1877 165 7 3 chr1 60301756 60302047 -182362306 - AluJo SINE Alu -17 295 4 1367 203 95 9 chr1 60302372 60302688 -182361665 + MER2 DNA MER2_type 2 344 0 237 196 0 18 chr1 60302688 60302744 -182361609 + L1ME3A LINE L1 6111 6165 -5 253 232 152 18 chr1 60302779 60302891 -182361462 + MLT1J LTR MaLR 277 403 -108 469 283 0 8 chr1 60302924 60303044 -182361309 + L2 LINE L2 3191 3309 -4 431 304 16 0 chr1 60303733 60303858 -182360495 + MIR SINE MIR 20 146 -62 329 269 57 0 chr1 60303894 60304035 -182360318 - L2 LINE L2 -168 3104 2956 212 183 117 17 chr1 60304436 60304496 -182359857 + MIR SINE MIR 19 84 -124 447 302 55 39 chr1 60304714 60304896 -182359457 - MIR3 SINE MIR -18 190 6 493 277 65 0 chr1 60305168 60305323 -182359030 - MER103 DNA DNA 0 166 2 235 328 33 33 chr1 60305351 60305473 -182358880 + MIR3 SINE MIR 1 122 -86 250 375 10 0 chr1 60305551 60305655 -182358698 - L2 LINE L2 -30 3242 3138 1878 164 0 35 chr1 60305827 60306144 -182358209 + AluJb SINE Alu 2 307 -5 248 274 13 78 chr1 60307033 60307186 -182357167 + L2 LINE L2 2911 3053 -260 268 243 29 0 chr1 60307436 60307506 -182356847 - MIR SINE MIR -110 152 81 2464 65 10 0 chr1 60307593 60307887 -182356466 + AluY SINE Alu 1 297 -14 2244 99 0 14 chr1 60307901 60308194 -182356159 + AluSx SINE Alu 1 289 -23 284 301 43 0 chr1 60308763 60308856 -182355497 - L2 LINE L2 -3 3310 3214 549 251 145 0 chr1 60308991 60309170 -182355183 + MIR SINE MIR 35 239 -23 878 251 147 41 chr1 60310491 60310933 -182353420 - LTR16C LTR ERVL 0 491 3 226 365 32 8 chr1 60311191 60311317 -182353036 + MIR SINE MIR 128 256 -6 2587 80 11 0 chr1 60311344 60311695 -182352658 + THE1A LTR MaLR 1 355 0 3744 67 0 0 chr1 60311695 60312188 -182352165 + THE1A-int LTR MaLR 1 493 -1087 915 89 0 0 chr1 60312188 60312300 -182352053 - AluSg/x SINE Alu -18 294 183 1144 67 0 0 chr1 60312301 60312435 -182351918 - AluY SINE Alu -177 134 1 7277 96 25 22 chr1 60312435 60313523 -182350830 + THE1A-int LTR MaLR 490 1580 0 2434 62 54 48 chr1 60313523 60313812 -182350541 + THE1A LTR MaLR 1 295 -60 1925 92 44 7 chr1 60313812 60314108 -182350245 + AluSx SINE Alu 1 306 0 2434 62 54 48 chr1 60314108 60314170 -182350183 + THE1A LTR MaLR 295 355 0 210 306 27 18 chr1 60314422 60314533 -182349820 + L2 LINE L2 1784 1895 -1419 250 269 164 0 chr1 60314575 60314679 -182349674 + MIR SINE MIR 94 214 -48 329 163 33 109 chr1 60314863 60314955 -182349398 + MIR3 SINE MIR 110 194 -14 483 256 5 85 chr1 60315339 60315456 -182348897 + MIR SINE MIR 7 103 -159 2166 99 0 7 chr1 60315456 60315758 -182348595 - AluSx SINE Alu -10 302 3 483 256 5 85 chr1 60315758 60315839 -182348514 + MIR SINE MIR 103 189 -73 281 317 12 0 chr1 60316006 60316088 -182348265 + MIR SINE MIR 174 256 -6 * 284 170 0 0 chr1 60316052 60316099 -182348254 + L2 LINE L2 3266 3312 -1 474 149 0 35 chr1 60316267 60316354 -182347999 - MIR SINE MIR -110 152 69 552 276 103 5 chr1 60316888 60317073 -182347280 + MIR SINE MIR 12 214 -48 330 228 89 30 chr1 60317243 60317344 -182347009 - MIR SINE MIR -66 142 36 207 231 0 0 chr1 60317486 60317540 -182346813 + MIR SINE MIR 99 151 -62 2347 84 0 10 chr1 60318952 60319260 -182345093 - AluSx SINE Alu -7 305 1 266 204 0 0 chr1 60319671 60319715 -182344638 + Charlie1 DNA MER1_type 5 48 -2713 618 325 26 22 chr1 60320252 60320480 -182343873 - MIR SINE MIR -27 235 7 1497 188 141 9 chr1 60320507 60320827 -182343526 + MLT1A1 LTR MaLR 1 362 -3 186 356 88 19 chr1 60321099 60321259 -182343094 - L2 LINE L2 -186 3086 2916 2201 95 0 0 chr1 60321397 60321715 -182342638 - AluSx SINE Alu 0 318 1 188 302 107 69 chr1 60321778 60322096 -182342257 - L2 LINE L2 -661 2653 2324 1972 139 158 11 chr1 60322219 60322592 -182341761 + MSTA LTR MaLR 1 428 0 2366 88 0 0 chr1 60322635 60322942 -182341411 - AluSc SINE Alu -2 307 1 1036 286 150 5 chr1 60322967 60323393 -182340960 + LTR16C LTR ERVL 4 491 0 2080 114 0 0 chr1 60323586 60323899 -182340454 + AluSg SINE Alu 1 313 0 419 258 72 53 chr1 60324140 60324349 -182340004 - MIR SINE MIR -18 244 32 226 228 99 30 chr1 60324367 60324468 -182339885 + L2 LINE L2 3164 3271 -1 188 315 55 0 chr1 60324533 60324606 -182339747 + L2 LINE L2 3236 3312 -1 454 323 22 18 chr1 60324864 60325087 -182339266 - MIR SINE MIR -32 230 6 518 256 128 13 chr1 60325596 60325752 -182338601 - MIR SINE MIR -16 246 73 2202 98 7 0 chr1 60325800 60326095 -182338258 - AluSx SINE Alu -15 297 1 288 330 39 17 chr1 60326297 60326476 -182337877 + L2 LINE L2 2925 3107 -165 210 313 84 0 chr1 60326578 60326661 -182337692 - MIR SINE MIR -82 126 37 231 291 138 82 chr1 60327094 60327413 -182336940 + L2 LINE L2 2924 3260 -12 468 252 8 39 chr1 60327435 60327562 -182336791 - MLT1K LTR MaLR 0 588 466 2158 104 0 7 chr1 60327667 60327965 -182336388 - AluSx SINE Alu -16 296 1 349 324 84 22 chr1 60328108 60328333 -182336020 - MLT1K LTR MaLR -348 240 2 351 239 9 46 chr1 60328338 60328447 -182335906 + MIR SINE MIR 96 200 -62 835 264 77 26 chr1 60328450 60328723 -182335630 - L2 LINE L2 0 3313 3027 520 264 34 53 chr1 60328745 60329010 -182335343 - L1MC5 LINE L1 -32 7929 7670 1000 142 0 0 chr1 60329039 60329194 -182335159 - AluJo SINE Alu -22 290 136 252 242 27 34 chr1 60329196 60329254 -182335099 - L1MC5 LINE L1 -310 7651 7594 291 38 57 0 chr1 60329254 60329307 -182335046 + (TA)n Simple_repeat Simple_repeat 2 57 0 252 242 27 34 chr1 60329307 60329397 -182334956 - L1MC5 LINE L1 -367 7594 7504 911 118 0 0 chr1 60329405 60329532 -182334821 - AluJo SINE Alu -185 127 1 472 271 46 28 chr1 60329536 60329754 -182334599 - L1MC5 LINE L1 -448 7513 7292 691 125 27 9 chr1 60329902 60330014 -182334339 - FLAM_C SINE Alu 0 143 30 31 0 0 0 chr1 60330024 60330055 -182334298 + AT_rich Low_complexity Low_complexity 1 31 0 918 251 85 105 chr1 60330187 60330251 -182334102 - L1MC5 LINE L1 -743 7218 7154 1856 142 0 20 chr1 60330251 60330554 -182333799 - AluJb SINE Alu -15 297 1 918 251 85 105 chr1 60330554 60330614 -182333739 - L1MC5 LINE L1 -807 7154 7094 1809 123 4 0 chr1 60330614 60330874 -182333479 + AluSq SINE Alu 1 261 -52 918 251 85 105 chr1 60330874 60331174 -182333179 - L1MC5 LINE L1 -867 7094 6790 1913 128 62 0 chr1 60331174 60331464 -182332889 - AluSx SINE Alu -4 308 1 918 251 85 105 chr1 60331464 60331796 -182332557 - L1MC5 LINE L1 -1171 6790 6453 2197 101 0 0 chr1 60331796 60332094 -182332259 + AluSx SINE Alu 1 298 -14 918 251 85 105 chr1 60332094 60332603 -182331750 - L1MC5 LINE L1 -1508 6453 5949 29 60 0 0 chr1 60332655 60332705 -182331648 + AT_rich Low_complexity Low_complexity 1 50 0 669 213 67 83 chr1 60332723 60332820 -182331533 + L2 LINE L2 3061 3158 -155 2337 97 0 0 chr1 60332820 60333130 -182331223 - AluSg SINE Alu 0 310 1 669 213 67 83 chr1 60333130 60333285 -182331068 + L2 LINE L2 3158 3309 -4 488 187 0 0 chr1 60333837 60333912 -182330441 + AluJ/FLAM SINE Alu 9 83 -229 21 0 0 0 chr1 60334831 60334852 -182329501 + AT_rich Low_complexity Low_complexity 1 21 0 2229 109 0 13 chr1 60334909 60335221 -182329132 - AluSx SINE Alu -4 308 1 23 54 0 0 chr1 60335294 60335331 -182329022 + AT_rich Low_complexity Low_complexity 1 37 0 395 309 111 6 chr1 60335490 60335652 -182328701 - MIR3 SINE MIR -19 189 11 317 265 15 0 chr1 60335872 60335986 -182328367 - MIR SINE MIR -85 123 6 310 283 11 22 chr1 60336083 60336175 -182328178 + MIR SINE MIR 1 91 -171 483 256 96 27 chr1 60336295 60336547 -182327806 + LTR16C LTR ERVL 188 444 -6 252 378 0 17 chr1 60336550 60336669 -182327684 + MIR SINE MIR 95 211 -51 212 170 85 21 chr1 60337504 60337551 -182326802 + L2 LINE L2 3264 3313 0 434 265 99 12 chr1 60337640 60337802 -182326551 - L2 LINE L2 -217 3055 2880 402 326 71 15 chr1 60339056 60339261 -182325092 - MLT1L LTR MaLR -202 391 111 355 325 18 0 chr1 60339412 60339526 -182324827 - MIR SINE MIR -57 151 36 369 278 21 0 chr1 60339991 60340088 -182324265 + MIR3 SINE MIR 110 208 0 357 24 0 0 chr1 60340569 60340611 -182323742 + (CA)n Simple_repeat Simple_repeat 1 42 0 261 314 35 0 chr1 60340735 60340821 -182323532 + MIR SINE MIR 95 183 -79 499 294 35 70 chr1 60340826 60341112 -182323241 + L2 LINE L2 3038 3313 0 355 254 123 8 chr1 60341170 60341292 -182323061 - L2 LINE L2 0 3272 3137 1530 111 0 0 chr1 60343316 60343558 -182320795 + AluSg/x SINE Alu 78 319 0 284 274 26 80 chr1 60344092 60344205 -182320148 + MIR3 SINE MIR 87 193 -15 553 291 70 39 chr1 60344213 60344352 -182320001 + MIR SINE MIR 3 153 -109 2335 84 0 0 chr1 60344352 60344660 -182319693 - AluY SINE Alu -3 308 1 553 291 70 39 chr1 60344660 60344750 -182319603 + MIR SINE MIR 153 239 -23 195 176 0 0 chr1 60344825 60344859 -182319494 - MIR SINE MIR -63 145 112 243 301 98 38 chr1 60345382 60345515 -182318838 + MIR SINE MIR 72 212 -50 297 167 0 0 chr1 60345723 60345777 -182318576 + CT-rich Low_complexity Low_complexity 3 56 0 2213 125 0 0 chr1 60345779 60346090 -182318263 - AluSx SINE Alu -1 311 1 274 151 19 0 chr1 60346434 60346487 -182317866 - HAL1 LINE L1 -1613 894 841 223 345 49 56 chr1 60346957 60347099 -182317254 - L2 LINE L2 0 3272 3132 328 324 98 23 chr1 60347438 60347611 -182316742 - L1M4 LINE L1 -2879 3267 3082 1863 139 36 10 chr1 60347612 60347914 -182316439 - AluSx SINE Alu -2 310 1 321 268 21 3 chr1 60348017 60348100 -182316253 - MIR SINE MIR -100 108 18 371 219 0 0 chr1 60348158 60348231 -182316122 - MIR SINE MIR -112 150 78 601 257 51 5 chr1 60348797 60348987 -182315366 + MIR SINE MIR 29 224 -38 283 290 91 43 chr1 60349248 60349434 -182314919 + L2 LINE L2 3049 3243 -70 186 267 50 17 chr1 60349602 60349662 -182314691 - L2 LINE L2 -85 3187 3126 461 248 19 105 chr1 60349698 60349807 -182314546 - LTR33 LTR ERVL -2 519 435 2014 137 0 3 chr1 60349807 60350099 -182314254 + AluSx SINE Alu 3 293 -19 461 248 19 105 chr1 60350099 60350199 -182314154 - LTR33 LTR ERVL -86 435 328 284 253 38 13 chr1 60350272 60350351 -182314002 - LTR33 LTR ERVL -426 95 15 338 297 26 7 chr1 60350480 60350635 -182313718 - L2 LINE L2 -290 2982 2825 369 274 20 0 chr1 60351053 60351155 -182313198 + MIR SINE MIR 52 155 -107 252 237 136 8 chr1 60351147 60351265 -182313088 - MIR SINE MIR 0 262 130 * 1476 171 4 0 chr1 60351267 60351506 -182312847 + AluSg/x SINE Alu 73 312 0 650 245 0 50 chr1 60351683 60351842 -182312511 - MIR SINE MIR -28 234 84 253 293 12 24 chr1 60351846 60351928 -182312425 - MIR SINE MIR -4 258 178 224 313 163 7 chr1 60353314 60353461 -182310892 - MIR3 SINE MIR -22 186 17 350 325 64 13 chr1 60353788 60353945 -182310408 - MIR SINE MIR -50 212 48 365 339 22 6 chr1 60354026 60354206 -182310147 - L2 LINE L2 -235 3037 2855 335 345 68 21 chr1 60354249 60354440 -182309913 + L2 LINE L2 3072 3271 -1 435 273 25 107 chr1 60354468 60354603 -182309750 - MIR SINE MIR 0 262 162 2192 105 3 0 chr1 60354603 60354899 -182309454 - AluSx SINE Alu -15 297 1 435 273 25 107 chr1 60354899 60355034 -182309319 - MIR SINE MIR -100 162 17 269 274 12 0 chr1 60356148 60356232 -182308121 + (TG)n Simple_repeat Simple_repeat 1 85 0 427 229 21 0 chr1 60356810 60356906 -182307447 + MER81 DNA DNA 17 114 0 205 172 23 39 chr1 60357843 60357971 -182306382 + (TGG)n Simple_repeat Simple_repeat 3 128 0 * 210 141 39 31 chr1 60357968 60358096 -182306257 + (TG)n Simple_repeat Simple_repeat 1 129 0 249 138 15 69 chr1 60358135 60358265 -182306088 + (TGG)n Simple_repeat Simple_repeat 3 125 0 183 136 57 34 chr1 60358282 60358458 -182305895 + (TG)n Simple_repeat Simple_repeat 1 180 0 621 215 1 25 chr1 60358475 60358624 -182305729 - L1MB5 LINE L1 -308 5866 5723 862 154 0 19 chr1 60358782 60358938 -182305415 + FRAM SINE Alu 20 172 -4 444 319 94 14 chr1 60358938 60359214 -182305139 - L2 LINE L2 -807 2507 2210 242 342 27 0 chr1 60359286 60359397 -182304956 + L2 LINE L2 3158 3271 -1 191 262 49 0 chr1 60360162 60360223 -182304130 + L2 LINE L2 3178 3241 -31 214 188 0 62 chr1 60360472 60360536 -182303817 + (CACCC)n Simple_repeat Simple_repeat 1 60 0 336 241 5 0 chr1 60360852 60360931 -182303422 + MIR SINE MIR 14 95 -113 739 215 11 63 chr1 60360932 60361123 -182303230 - MER5A DNA MER1_type -8 181 1 426 227 97 32 chr1 60361258 60361412 -182302941 - MIR3 SINE MIR -23 185 22 1438 280 39 35 chr1 60361471 60361960 -182302393 + LTR16C LTR ERVL 1 491 0 450 327 89 0 chr1 60361986 60362154 -182302199 - MIR SINE MIR -12 250 68 190 339 174 0 chr1 60363374 60363495 -182300858 + L2 LINE L2 3112 3253 -19 712 260 74 25 chr1 60363511 60363753 -182300600 - MIR SINE MIR 0 262 9 328 226 36 0 chr1 60364113 60364197 -182300156 + MIR SINE MIR 67 153 -109 2350 95 0 0 chr1 60364571 60364867 -182299486 + AluSg1 SINE Alu 1 296 -13 383 236 32 0 chr1 60365427 60365552 -182298801 + MIR SINE MIR 25 139 -69 285 240 13 0 chr1 60365767 60365842 -182298511 + MIR SINE MIR 187 262 0 1567 166 65 0 chr1 60365869 60366027 -182298326 - AluJb SINE Alu -16 296 150 315 0 0 0 chr1 60366027 60366062 -182298291 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1567 166 65 0 chr1 60366062 60366181 -182298172 - AluJb SINE Alu -162 150 1 550 242 40 7 chr1 60366439 60366588 -182297765 + MIR SINE MIR 39 192 -70 650 256 101 63 chr1 60367080 60367612 -182296741 - L2 LINE L2 0 3313 2746 1838 161 0 18 chr1 60367612 60367925 -182296428 - AluJb SINE Alu 0 310 3 650 256 101 63 chr1 60367925 60368053 -182296300 - L2 LINE L2 -567 2746 2624 323 258 121 24 chr1 60368536 60368660 -182295693 - L2 LINE L2 0 3272 3137 236 325 124 58 chr1 60368829 60369241 -182295112 + L2 LINE L2 2804 3242 -30 2518 64 0 0 chr1 60369257 60369553 -182294800 - AluY SINE Alu -15 296 1 2409 112 36 8 chr1 60369580 60369945 -182294408 - MLT1B LTR MaLR 0 390 16 469 151 63 56 chr1 60370565 60370691 -182293662 + L1MD3 LINE L1 6990 7116 -879 362 208 10 109 chr1 60370691 60370792 -182293561 + MLT1F1 LTR MaLR 35 125 -442 2926 201 14 7 chr1 60370792 60371380 -182292973 + L1MD3 LINE L1 7404 7995 0 685 275 30 48 chr1 60371514 60371619 -182292734 - L1MC4a LINE L1 -1875 5933 5828 1591 167 59 3 chr1 60371619 60371925 -182292428 + MER33 DNA MER1_type 2 324 0 685 275 30 48 chr1 60371925 60372114 -182292239 - L1MC4a LINE L1 -1980 5828 5644 1324 170 14 36 chr1 60372118 60372325 -182292028 + MER58A DNA MER1_type 7 210 -2210 2286 80 21 0 chr1 60372325 60372612 -182291741 + AluSc SINE Alu 1 293 -16 1324 170 14 36 chr1 60372612 60372627 -182291726 + MER58A DNA MER1_type 210 224 0 1289 251 119 3 chr1 60372660 60373014 -182291339 - LTR16A LTR ERVL 0 450 56 5323 315 47 27 chr1 60373163 60373402 -182290951 - ERVL LTR ERVL -381 5383 5150 2189 126 13 0 chr1 60373402 60373703 -182290650 + AluSx SINE Alu 1 305 -7 5323 315 47 27 chr1 60373703 60374647 -182289706 - ERVL LTR ERVL -614 5150 4226 1949 135 46 35 chr1 60374647 60375018 -182289335 + THE1C LTR MaLR 1 375 0 5323 315 47 27 chr1 60375018 60376275 -182288078 - ERVL LTR ERVL -1538 4226 2893 1517 191 30 23 chr1 60376309 60376612 -182287741 + AluJb SINE Alu 1 305 -7 374 218 143 60 chr1 60376612 60376745 -182287608 + L2 LINE L2 3168 3311 -2 326 328 179 16 chr1 60377393 60377920 -182286433 + L2 LINE L2 2694 3313 0 2177 121 3 16 chr1 60377972 60378287 -182286066 - AluSx SINE Alu -1 311 1 2304 131 0 0 chr1 60378470 60378782 -182285571 - AluSx SINE Alu 0 312 1 187 312 121 32 chr1 60379211 60379368 -182284985 + L2 LINE L2 2798 2968 -346 249 215 165 13 chr1 60379437 60379516 -182284837 + L2 LINE L2 2985 3075 -197 980 258 100 14 chr1 60379541 60379890 -182284463 - L2 LINE L2 0 3313 2935 365 43 0 0 chr1 60379899 60379945 -182284408 - MADE1 DNA Mariner -34 46 1 511 231 170 7 chr1 60380054 60380201 -182284152 - L2 LINE L2 -967 2347 2177 412 250 0 10 chr1 60380220 60380316 -182284037 + MIR SINE MIR 45 139 -69 354 287 77 28 chr1 60382417 60382560 -182281793 - MIR SINE MIR -65 143 7 1635 161 20 40 chr1 60383089 60383387 -182280966 - AluJo SINE Alu -20 292 1 459 263 57 85 chr1 60383501 60383782 -182280571 - L2 LINE L2 -3 3269 2997 238 189 122 14 chr1 60383782 60383856 -182280497 + L1ME3A LINE L1 6057 6138 -32 243 299 28 19 chr1 60383902 60384009 -182280344 + HAL1 LINE L1 844 951 -1556 201 121 0 0 chr1 60384016 60384049 -182280304 + (GA)n Simple_repeat Simple_repeat 1 33 0 184 299 122 19 chr1 60384541 60384648 -182279705 - L2 LINE L2 -5 3308 3191 240 289 0 0 chr1 60385434 60385486 -182278867 + MER117 DNA MER1_type 103 154 -43 338 318 53 33 chr1 60385553 60385704 -182278649 + L2 LINE L2 3116 3269 -3 273 171 57 43 chr1 60386237 60386307 -182278046 - tRNA-Ile-ATT tRNA tRNA -6 71 1 21 0 0 0 chr1 60388590 60388611 -182275742 + AT_rich Low_complexity Low_complexity 1 21 0 452 294 72 13 chr1 60389004 60389239 -182275114 - MIR SINE MIR -3 259 11 262 245 113 87 chr1 60389929 60390149 -182274204 + L1MC4 LINE L1 7029 7255 -737 691 261 52 103 chr1 60390260 60390946 -182273407 + L1MC5 LINE L1 7276 7926 -35 29 0 0 0 chr1 60391076 60391105 -182273248 + AT_rich Low_complexity Low_complexity 1 29 0 323 320 76 57 chr1 60391589 60391905 -182272448 + L2 LINE L2 2804 3125 -147 310 294 55 75 chr1 60392130 60392212 -182272141 + L1ME4a LINE L1 4488 4570 -1576 1911 183 0 0 chr1 60392212 60392513 -182271840 + AluJo SINE Alu 3 303 -9 310 294 55 75 chr1 60392513 60392722 -182271631 + L1ME4a LINE L1 4570 4773 -1373 269 270 60 20 chr1 60392924 60393024 -182271329 - L2 LINE L2 0 3272 3169 378 96 0 0 chr1 60393461 60393513 -182270840 - Alu SINE Alu -9 291 240 1278 73 0 0 chr1 60393513 60393664 -182270689 - AluSq/x SINE Alu -162 151 1 569 246 19 119 chr1 60393736 60393931 -182270422 + L1ME4a LINE L1 5635 5769 -352 1986 144 7 0 chr1 60393931 60394223 -182270130 + AluSx SINE Alu 1 294 -18 569 246 19 119 chr1 60394223 60394465 -182269888 + L1ME4a LINE L1 5769 6033 -88 584 318 131 54 chr1 60394700 60395677 -182268676 + L2 LINE L2 1918 2969 -345 330 301 45 30 chr1 60395680 60395813 -182268540 + L2 LINE L2 3134 3268 -4 631 229 54 49 chr1 60396019 60396224 -182268129 - MIR SINE MIR -54 208 3 1856 150 14 3 chr1 60396698 60396824 -182267529 + AluJo SINE Alu 1 124 -188 180 0 0 0 chr1 60396824 60396844 -182267509 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1856 150 14 3 chr1 60396844 60397004 -182267349 + AluJo SINE Alu 124 290 -22 841 202 62 5 chr1 60397024 60397232 -182267121 - MIR SINE MIR -37 225 6 183 244 139 35 chr1 60397242 60397328 -182267025 - MIR3 SINE MIR -44 164 70 2130 117 7 7 chr1 60397798 60398106 -182266247 + AluSx SINE Alu 1 308 -4 1823 175 44 39 chr1 60398415 60398803 -182265550 + MLT1D LTR MaLR 1 390 -115 492 277 13 38 chr1 60398852 60399011 -182265342 + MIR SINE MIR 58 212 -50 353 380 57 8 chr1 60399375 60399638 -182264715 + L2 LINE L2 2038 2313 -1001 532 236 0 0 chr1 60399863 60399969 -182264384 + MIR SINE MIR 41 146 -62 270 328 109 11 chr1 60400486 60400660 -182263693 - L2 LINE L2 -1 3312 3122 353 277 110 35 chr1 60400713 60400995 -182263358 - L2 LINE L2 -1311 2003 1701 698 175 139 58 chr1 60401218 60401492 -182262861 + L2 LINE L2 2981 3276 -37 3263 92 2 17 chr1 60401681 60402148 -182262205 + L1PA14 LINE L1 5698 6157 -4 2000 144 0 43 chr1 60402186 60402512 -182261841 - AluSx SINE Alu 0 312 1 228 311 14 0 chr1 60403066 60403140 -182261213 + L2 LINE L2 3198 3272 0 1388 312 108 38 chr1 60403242 60403769 -182260584 + L2 LINE L2 1618 2106 -1208 2416 72 0 0 chr1 60403769 60404061 -182260292 - AluY SINE Alu -18 293 2 1388 312 108 38 chr1 60404061 60404622 -182259731 + L2 LINE L2 2106 2783 -531 867 251 68 124 chr1 60404860 60404977 -182259376 + L1MEd LINE L1 561 683 -5436 1961 150 0 13 chr1 60404977 60405291 -182259062 + AluJo SINE Alu 1 310 -2 867 251 68 124 chr1 60405291 60405505 -182258848 + L1MEd LINE L1 683 908 -5211 350 91 0 0 chr1 60405505 60405549 -182258804 + Alu SINE Alu 1 44 -258 2433 80 0 3 chr1 60405549 60405848 -182258505 + AluSc SINE Alu 1 298 -11 867 251 68 124 chr1 60405848 60406133 -182258220 + L1MEd LINE L1 907 1180 -4939 1961 172 0 0 chr1 60406133 60406436 -182257917 + AluJo SINE Alu 2 304 -8 867 251 68 124 chr1 60406436 60406499 -182257854 + L1MEd LINE L1 1180 1245 -4874 2348 195 80 46 chr1 60406525 60407049 -182257304 + MLT1F LTR MaLR 1 542 0 234 329 29 53 chr1 60407055 60407262 -182257091 + L2 LINE L2 2772 2973 -341 278 324 108 0 chr1 60407367 60407469 -182256884 + L2 LINE L2 3147 3259 -13 22 0 0 0 chr1 60407790 60407812 -182256541 + AT_rich Low_complexity Low_complexity 1 22 0 220 269 0 0 chr1 60408444 60408496 -182255857 + L2 LINE L2 3008 3059 -213 2175 124 13 0 chr1 60408619 60408918 -182255435 - AluSx SINE Alu -9 303 1 742 183 214 4 chr1 60408985 60409247 -182255106 + MER5C DNA MER1_type 8 324 0 285 283 11 11 chr1 60410161 60410253 -182254100 + L1MC4 LINE L1 7942 8033 -9 466 178 118 52 chr1 60410369 60410504 -182253849 + L1ME3A LINE L1 6018 6161 -9 320 250 67 35 chr1 60411732 60411943 -182252410 - L1MEd LINE L1 -3849 2312 2100 1095 135 17 11 chr1 60411963 60412141 -182252212 - AluJo/FRAM SINE Alu 0 312 134 1634 173 23 36 chr1 60412141 60412447 -182251906 - AluSx SINE Alu -10 302 1 1857 138 25 7 chr1 60412526 60412808 -182251545 - AluJo SINE Alu -25 287 1 374 291 97 6 chr1 60412870 60413095 -182251258 - L1MEd LINE L1 -4973 1146 895 2491 160 88 59 chr1 60413167 60413244 -182251109 + MER51A LTR ERV1 9 82 -552 2269 118 0 6 chr1 60413244 60413558 -182250795 + AluSx SINE Alu 1 312 0 2491 160 88 59 chr1 60413558 60413980 -182250373 + MER51A LTR ERV1 82 634 0 336 386 33 17 chr1 60413980 60414221 -182250132 - L1MEd LINE L1 -5279 840 596 1877 199 6 11 chr1 60414296 60414483 -182249870 - MER2 DNA MER2_type 0 345 159 1241 162 63 0 chr1 60414483 60414705 -182249648 - MER46A DNA MER2_type 0 236 1 1877 199 6 11 chr1 60414705 60414864 -182249489 - MER2 DNA MER2_type -186 159 1 615 283 87 28 chr1 60414961 60415283 -182249070 - L1MEd LINE L1 -5712 407 67 270 342 71 32 chr1 60415420 60415575 -182248778 + L2 LINE L2 2899 3059 -213 887 259 13 17 chr1 60416510 60416746 -182247607 + MIR SINE MIR 21 255 -7 360 240 39 31 chr1 60416837 60416966 -182247387 - MIR SINE MIR -16 246 117 2358 85 0 26 chr1 60417281 60417586 -182246767 - AluSx SINE Alu -15 297 1 1799 148 20 46 chr1 60417660 60417824 -182246529 - AluJb SINE Alu -15 297 143 2406 82 3 0 chr1 60417824 60418118 -182246235 - AluSg SINE Alu -15 295 1 1799 148 20 46 chr1 60418118 60418258 -182246095 - AluJb SINE Alu -169 143 1 274 324 81 20 chr1 60418452 60418600 -182245753 - L2 LINE L2 -5 3267 3111 439 206 7 110 chr1 60418695 60418796 -182245557 - L2 LINE L2 0 3313 3228 2148 133 3 0 chr1 60418796 60419096 -182245257 + AluSx SINE Alu 5 305 -7 439 206 7 110 chr1 60419096 60419130 -182245223 - L2 LINE L2 -85 3228 3192 2235 98 0 0 chr1 60419289 60419566 -182244787 + AluSg SINE Alu 1 277 -33 195 42 0 0 chr1 60419568 60419592 -182244761 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 377 316 85 80 chr1 60419718 60420043 -182244310 - L2 LINE L2 0 3272 2950 1069 245 32 0 chr1 60420043 60420296 -182244057 - MIR SINE MIR 0 262 2 377 316 85 80 chr1 60420296 60420753 -182243600 - L2 LINE L2 -322 2950 2487 1286 147 173 38 chr1 60420753 60421019 -182243334 + AluJb SINE Alu 1 302 0 377 316 85 80 chr1 60421019 60421142 -182243211 - L2 LINE L2 -785 2487 2366 1871 176 0 0 chr1 60421177 60421484 -182242869 - AluJb SINE Alu -5 307 1 1982 91 0 60 chr1 60421619 60421949 -182242404 + AluSg SINE Alu 1 312 0 470 284 84 6 chr1 60422193 60422358 -182241995 + MER20B DNA MER1_type 43 219 0 337 200 12 47 chr1 60422358 60422443 -182241910 - MIR3 SINE MIR -48 160 79 1851 122 50 7 chr1 60422978 60423282 -182241071 + AluSx SINE Alu 1 312 0 476 226 139 0 chr1 60426915 60427030 -182237323 - MIR SINE MIR -76 186 56 1562 154 55 20 chr1 60427089 60427382 -182236971 + AluSx SINE Alu 1 303 -9 2318 70 17 10 chr1 60427383 60427681 -182236672 + AluSq SINE Alu 2 301 -12 2198 102 16 7 chr1 60427821 60428124 -182236229 + AluSx SINE Alu 1 306 -6 30 0 0 0 chr1 60428401 60428431 -182235922 + AT_rich Low_complexity Low_complexity 1 30 0 669 198 0 0 chr1 60428431 60428547 -182235806 - FLAM_C SINE Alu -17 116 1 232 191 0 0 chr1 60428810 60428852 -182235501 + L2 LINE L2 3255 3296 -17 343 278 143 8 chr1 60428993 60429126 -182235227 - MIR SINE MIR -111 151 1 193 250 0 0 chr1 60429802 60429842 -182234511 - L2 LINE L2 -18 3254 3215 1621 185 6 35 chr1 60430252 60430565 -182233788 - AluJo SINE Alu -8 304 1 204 336 65 28 chr1 60432025 60432132 -182232221 - MIR SINE MIR -88 174 64 24 32 0 0 chr1 60432356 60432387 -182231966 + AT_rich Low_complexity Low_complexity 1 31 0 239 213 0 0 chr1 60432795 60432842 -182231511 - MIR SINE MIR -111 151 105 607 246 153 19 chr1 60433370 60433585 -182230768 - L1MC4a LINE L1 -1962 5846 5603 426 179 0 13 chr1 60433585 60433663 -182230690 - FLAM_A SINE Alu -5 137 61 475 83 0 0 chr1 60433675 60433747 -182230606 + Alu SINE Alu 241 312 0 2304 87 0 7 chr1 60433883 60434183 -182230170 - AluSc SINE Alu -11 298 1 29 47 0 0 chr1 60434674 60434717 -182229636 + AT_rich Low_complexity Low_complexity 1 43 0 385 281 164 12 chr1 60435385 60435556 -182228797 - MIR SINE MIR -58 204 8 1080 185 22 0 chr1 60436634 60436818 -182227535 - MER5A DNA MER1_type 0 189 2 22 35 0 0 chr1 60437545 60437574 -182226779 + AT_rich Low_complexity Low_complexity 1 29 0 2350 106 0 0 chr1 60437791 60438093 -182226260 + AluSx SINE Alu 1 302 -10 1891 141 21 14 chr1 60439096 60439379 -182224974 + AluJb SINE Alu 1 285 -27 187 342 137 17 chr1 60439462 60439579 -182224774 - MIR3 SINE MIR -74 134 4 478 167 0 31 chr1 60440767 60440863 -182223490 + FLAM_A SINE Alu 49 141 -1 1999 144 14 3 chr1 60441950 60442242 -182222111 - AluSx SINE Alu -17 295 1 1946 148 7 16 chr1 60442329 60442633 -182221720 + AluJb SINE Alu 1 301 -11 348 169 15 0 chr1 60443184 60443249 -182221104 - L1MA8 LINE L1 -238 6053 5988 2261 117 0 0 chr1 60443453 60443752 -182220601 - AluSx SINE Alu -13 299 1 659 209 169 13 chr1 60443875 60444100 -182220253 - L1MB8 LINE L1 -97 6081 5822 2432 88 0 3 chr1 60444103 60444408 -182219945 - AluSx SINE Alu -8 304 1 2262 114 0 3 chr1 60444619 60444925 -182219428 - AluSx SINE Alu -7 305 1 1679 133 3 112 chr1 60444984 60445323 -182219030 + AluJo SINE Alu 1 302 0 2185 112 3 0 chr1 60446988 60447274 -182217079 - AluSq SINE Alu -26 287 1 966 106 0 8 chr1 60447651 60447783 -182216570 + FLAM_C SINE Alu 1 131 -12 343 183 0 17 chr1 60448029 60448089 -182216264 + AluJb SINE Alu 59 117 -185 271 350 168 15 chr1 60449349 60449881 -182214472 - L2 LINE L2 0 3272 2652 2102 130 0 7 chr1 60450460 60450753 -182213600 - AluSx SINE Alu -17 295 5 675 229 83 10 chr1 60450805 60450997 -182213356 - Charlie4 DNA MER1_type -7 1954 1749 1082 116 48 5 chr1 60451036 60451225 -182213128 - Charlie4 DNA MER1_type -1726 235 39 5942 92 36 73 chr1 60451695 60452049 -182212304 + L1PA12 LINE L1 4996 5361 -807 2996 6 0 0 chr1 60452049 60452367 -182211986 + AluYb8 SINE Alu 1 318 0 5942 92 36 73 chr1 60452367 60452495 -182211858 + L1PA12 LINE L1 5361 5492 -676 2073 107 10 49 chr1 60452495 60452803 -182211550 + AluSc SINE Alu 1 296 -13 5942 92 36 73 chr1 60452803 60453553 -182210800 + L1PA12 LINE L1 5492 6168 0 402 259 97 32 chr1 60453796 60453981 -182210372 - MIR SINE MIR -33 229 33 471 219 69 0 chr1 60454145 60454305 -182210048 + L1MC/D LINE L1 5196 5366 -780 444 196 21 0 chr1 60454403 60454500 -182209853 - MER5A DNA MER1_type -79 110 12 747 230 104 5 chr1 60454510 60454732 -182209621 + MIR SINE MIR 16 259 -3 441 330 66 0 chr1 60454749 60454946 -182209407 + L1MC/D LINE L1 5405 5614 -2194 228 67 0 0 chr1 60454954 60454984 -182209369 + (TG)n Simple_repeat Simple_repeat 2 31 0 2200 73 59 7 chr1 60455364 60455650 -182208703 - AluY SINE Alu -10 301 1 257 224 165 0 chr1 60455669 60455754 -182208599 - MIR SINE MIR -144 118 20 2486 71 0 0 chr1 60456092 60456387 -182207966 + AluY SINE Alu 1 295 -16 271 295 27 0 chr1 60456456 60456568 -182207785 + MIR3 SINE MIR 72 186 -22 2040 130 0 7 chr1 60456712 60457019 -182207334 - AluSx SINE Alu 0 306 2 293 326 12 0 chr1 60457095 60457206 -182207147 + L1ME LINE L1 5438 5553 -611 830 245 9 9 chr1 60457217 60457433 -182206920 + MIR SINE MIR 34 249 -13 428 254 127 46 chr1 60457756 60457776 -182206577 - MER117 DNA MER1_type 0 197 180 2152 78 257 6 chr1 60457776 60458134 -182206219 + LTR7 LTR ERV1 1 448 -2 428 254 127 46 chr1 60458134 60458286 -182206067 - MER117 DNA MER1_type -17 180 11 2447 78 0 3 chr1 60458447 60458740 -182205613 - AluSq SINE Alu -21 292 1 1258 217 17 10 chr1 60458753 60459048 -182205305 + LTR16C LTR ERVL 195 491 0 272 327 92 0 chr1 60459054 60459194 -182205159 - MIR3 SINE MIR -46 162 7 240 263 63 0 chr1 60459823 60459918 -182204435 + MIR SINE MIR 81 181 -81 183 306 45 108 chr1 60460343 60460676 -182203677 - L2 LINE L2 -62 3210 2899 364 265 30 60 chr1 60461428 60461628 -182202725 - MIR SINE MIR -49 213 20 2430 84 7 0 chr1 60462290 60462598 -182201755 + AluSx SINE Alu 1 310 -2 316 302 70 0 chr1 60462879 60462965 -182201388 + L2 LINE L2 3201 3292 -21 887 190 6 11 chr1 60462975 60463149 -182201204 + FRAM SINE Alu 1 173 -3 559 209 29 52 chr1 60463189 60463361 -182200992 - MIR SINE MIR -65 197 30 229 342 145 17 chr1 60463379 60463496 -182200857 + MIR SINE MIR 17 148 -60 357 212 20 0 chr1 60464223 60464322 -182200031 + L2 LINE L2 3010 3110 -162 180 255 0 0 chr1 60464423 60464470 -182199883 - L2 LINE L2 -70 3243 3197 301 302 9 9 chr1 60464963 60465079 -182199274 + (TG)n Simple_repeat Simple_repeat 1 116 0 210 192 0 0 chr1 60465094 60465146 -182199207 + (TG)n Simple_repeat Simple_repeat 2 53 0 499 298 70 12 chr1 60465666 60465881 -182198472 - MIR SINE MIR -43 219 1 641 261 37 84 chr1 60466263 60466562 -182197791 + L2 LINE L2 2939 3223 -49 192 77 0 0 chr1 60466584 60466610 -182197743 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 522 336 119 39 chr1 60466742 60467466 -182196887 - L3 LINE CR1 -6 1571 790 259 325 13 0 chr1 60468070 60468147 -182196206 - L3 LINE CR1 -91 1486 1409 226 158 195 37 chr1 60468190 60468272 -182196081 - MIR SINE MIR -71 137 43 226 295 106 20 chr1 60468284 60468433 -182195920 - MIR SINE MIR -62 146 28 316 206 110 0 chr1 60469391 60469464 -182194889 - L3 LINE CR1 -70 1507 1427 1298 153 0 0 chr1 60469493 60469702 -182194651 + AluJb SINE Alu 100 308 -4 256 314 172 24 chr1 60469869 60470038 -182194315 - MER117 DNA MER1_type 0 197 4 393 236 69 13 chr1 60470274 60470423 -182193930 - MIR SINE MIR -65 143 28 1602 168 21 14 chr1 60470498 60470783 -182193570 + AluJb SINE Alu 2 288 -24 23 0 0 0 chr1 60470787 60470810 -182193543 + AT_rich Low_complexity Low_complexity 1 23 0 2397 70 67 6 chr1 60470974 60471317 -182193036 + L1PA8 LINE L1 5806 6169 -3 317 285 82 58 chr1 60471674 60471965 -182192388 - L2 LINE L2 -171 3101 2804 1375 157 3 83 chr1 60472048 60472348 -182192005 - AluJo SINE Alu -24 288 13 1379 52 12 0 chr1 60472661 60472834 -182191519 + AluY SINE Alu 132 306 -5 213 304 98 11 chr1 60473133 60473225 -182191128 - MIR SINE MIR -62 146 47 398 270 163 41 chr1 60473237 60473433 -182190920 - MIR SINE MIR -4 258 39 8946 127 109 27 chr1 60473455 60475021 -182189332 + pTR5 LTR ERV1 742 2435 -3 2103 146 31 11 chr1 60475021 60475377 -182188976 + THE1B LTR MaLR 2 364 0 352 277 57 19 chr1 60475402 60475561 -182188792 - L2 LINE L2 -210 3062 2898 378 298 58 50 chr1 60475884 60476143 -182188210 - MIR SINE MIR -2 260 3 285 281 124 0 chr1 60476613 60476734 -182187619 - MIR3 SINE MIR -3 205 70 358 272 11 22 chr1 60476800 60476892 -182187461 + L1MC4 LINE L1 6613 6703 -1339 269 163 41 0 chr1 60476896 60476945 -182187408 - L1ME3 LINE L1 -20 6142 6092 226 154 0 0 chr1 60476948 60476987 -182187366 - L1MA10 LINE L1 -7 6327 6289 1999 139 0 0 chr1 60476994 60477303 -182187050 - AluSx SINE Alu -3 309 1 885 109 0 16 chr1 60477304 60477432 -182186921 - AluSq/x SINE Alu -186 127 2 1188 224 41 76 chr1 60477438 60477462 -182186891 - L1ME1 LINE L1 -38 6128 6105 1877 142 0 3 chr1 60477462 60477751 -182186602 + AluJo SINE Alu 2 289 -23 1188 224 41 76 chr1 60477751 60478253 -182186100 - L1ME1 LINE L1 -61 6105 5653 2032 126 0 40 chr1 60478254 60478579 -182185774 - AluSq SINE Alu -1 312 1 357 24 0 0 chr1 60478579 60478621 -182185732 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 2100 102 3 0 chr1 60478621 60478904 -182185449 - AluSp SINE Alu -29 284 1 192 40 0 0 chr1 60478910 60478935 -182185418 + (TA)n Simple_repeat Simple_repeat 2 26 0 935 151 0 0 chr1 60478938 60479084 -182185269 - FRAM SINE Alu -30 146 1 1060 169 48 0 chr1 60479087 60479276 -182185077 - L1ME LINE L1 -473 5760 5563 1646 168 0 18 chr1 60479489 60479769 -182184584 - AluJb SINE Alu -25 287 13 564 158 11 0 chr1 60479789 60479884 -182184469 - FLAM_A SINE Alu -11 131 36 1023 164 9 35 chr1 60479893 60480101 -182184252 - L1ME LINE L1 -682 5553 5350 7153 55 8 3 chr1 60480101 60481486 -182182867 - L1PA6 LINE L1 -2 6152 4761 1023 164 9 35 chr1 60481486 60481503 -182182850 - L1ME LINE L1 -885 5350 5334 1973 118 19 25 chr1 60481515 60481829 -182182524 - AluSx SINE Alu 0 312 1 2011 160 43 93 chr1 60481845 60481858 -182182495 - L1ME LINE L1 -874 5341 5329 2159 109 10 3 chr1 60481858 60482169 -182182184 - AluSp SINE Alu 0 313 1 2011 160 43 93 chr1 60482169 60482437 -182181916 - L1ME LINE L1 -886 5329 5097 1494 173 32 18 chr1 60482437 60482715 -182181638 - AluJo SINE Alu -30 282 1 2011 160 43 93 chr1 60482715 60482970 -182181383 - L1ME LINE L1 -1118 5097 4831 1826 147 10 17 chr1 60482979 60483279 -182181074 - AluJb SINE Alu -14 298 1 593 274 42 19 chr1 60483279 60483494 -182180859 - L1ME LINE L1 -1769 4446 4227 1013 123 0 0 chr1 60483501 60483694 -182180659 - AluSq SINE Alu 0 332 140 2576 173 33 67 chr1 60483694 60483836 -182180517 - L1ME LINE L1 -1971 4244 4099 2118 98 20 3 chr1 60483836 60484133 -182180220 + AluSx SINE Alu 1 302 -10 2576 173 33 67 chr1 60484133 60484332 -182180021 - L1ME LINE L1 -2116 4099 3895 2217 112 0 0 chr1 60484332 60484644 -182179709 - AluSx SINE Alu 0 312 1 2576 173 33 67 chr1 60484644 60484962 -182179391 - L1ME LINE L1 -2320 3895 3606 7016 167 80 67 chr1 60484963 60486614 -182177739 + MER52A LTR ERV1 1 1747 -8 293 207 0 35 chr1 60486628 60486686 -182177667 - L2 LINE L2 -2 3270 3215 2125 120 7 0 chr1 60486934 60487243 -182177110 - AluSp SINE Alu -2 311 1 1111 229 71 6 chr1 60487262 60487598 -182176755 - L1ME LINE L1 -2603 3612 3255 274 136 0 0 chr1 60487625 60487669 -182176684 - L1ME LINE L1 -3440 2775 2732 7877 112 45 12 chr1 60487725 60487775 -182176578 - HSMAR2 DNA Mariner -9 1293 1246 2247 68 0 0 chr1 60487775 60488079 -182176274 + AluY SINE Alu 1 304 0 7877 112 45 12 chr1 60488079 60489214 -182175139 - HSMAR2 DNA Mariner -56 1246 68 839 162 0 0 chr1 60489233 60489369 -182174984 + FRAM SINE Alu 20 155 -21 340 148 16 0 chr1 60489369 60489430 -182174923 - HSMAR2 DNA Mariner -1239 63 2 1126 211 4 0 chr1 60489455 60489702 -182174651 - L1ME LINE L1 -3523 2692 2445 1921 135 45 15 chr1 60489704 60490037 -182174316 - Tigger7 DNA MER2_type -2 2485 2143 569 195 28 2 chr1 60490035 60490254 -182174099 + Tigger7 DNA MER2_type 76 347 -2140 * 446 178 14 0 chr1 60490257 60490330 -182174023 - Tigger7 DNA MER2_type -265 74 1 1572 171 14 0 chr1 60490363 60490638 -182173715 - AluJb SINE Alu -33 279 1 2730 234 94 29 chr1 60490646 60491655 -182172698 - L1ME LINE L1 -3913 2483 1199 2085 139 0 0 chr1 60491655 60491964 -182172389 - AluSx SINE Alu -3 309 1 2730 234 94 29 chr1 60491964 60492429 -182171924 - L1ME LINE L1 -5197 1199 766 4746 171 50 73 chr1 60492438 60492502 -182171851 - L1MB8 LINE L1 -5 6173 6109 2090 100 7 0 chr1 60492502 60492807 -182171546 + AluSx SINE Alu 1 307 0 4746 171 50 73 chr1 60492807 60493596 -182170757 - L1MB8 LINE L1 -69 6109 5303 2182 106 7 0 chr1 60493596 60493899 -182170454 - AluSx SINE Alu -7 305 1 4746 171 50 73 chr1 60493899 60494135 -182170218 - L1MB8 LINE L1 -875 5303 5063 2098 109 0 7 chr1 60494135 60494438 -182169915 - AluSq SINE Alu -8 305 5 4746 171 50 73 chr1 60494438 60494677 -182169676 - L1MB8 LINE L1 -1115 5063 4900 1596 149 83 24 chr1 60494677 60494966 -182169387 + AluJo SINE Alu 1 306 -6 4746 171 50 73 chr1 60494966 60495038 -182169315 - L1MB8 LINE L1 -1278 4900 4828 2595 245 74 27 chr1 60495047 60495790 -182168563 - L1ME LINE L1 -5571 825 48 1024 198 59 76 chr1 60495820 60496083 -182168270 - MLT1A2 LTR MaLR 0 390 167 2172 104 3 0 chr1 60496083 60496382 -182167971 - AluSx SINE Alu -12 300 1 1024 198 59 76 chr1 60496382 60496547 -182167806 - MLT1A2 LTR MaLR -223 167 1 2289 60 0 48 chr1 60497021 60497337 -182167016 + AluY SINE Alu 1 301 -10 541 312 195 9 chr1 60497657 60497990 -182166363 - L3 LINE CR1 -24 1553 1159 262 324 65 6 chr1 60498303 60498418 -182165935 + L2 LINE L2 1977 2107 -1207 2023 116 3 3 chr1 60498418 60498710 -182165643 - AluJb SINE Alu -20 292 1 262 324 65 6 chr1 60498710 60498764 -182165589 + L2 LINE L2 2107 2156 -1158 197 350 100 0 chr1 60499041 60499141 -182165212 + L2 LINE L2 3160 3269 -3 332 293 133 70 chr1 60499334 60499764 -182164589 + L2 LINE L2 2815 3271 -1 268 111 0 14 chr1 60499772 60499824 -182164529 - MLT2D LTR ERVL 0 397 359 2046 183 19 6 chr1 60499889 60500250 -182164103 - MLT2D LTR ERVL -48 366 1 240 163 143 0 chr1 60500251 60500300 -182164053 + MIR SINE MIR 93 148 -60 361 264 138 56 chr1 60500395 60500441 -182163912 - MIR SINE MIR -67 141 100 2344 93 0 6 chr1 60500441 60500753 -182163600 - AluSq SINE Alu -3 310 1 2121 107 0 3 chr1 60500763 60501063 -182163290 - AluSx SINE Alu -13 299 1 1711 146 17 0 chr1 60501065 60501352 -182163001 - AluJo SINE Alu -18 294 3 361 264 138 56 chr1 60501352 60501458 -182162895 - MIR SINE MIR -116 92 31 417 304 0 34 chr1 60502825 60503119 -182161234 + (TGG)n Simple_repeat Simple_repeat 1 283 0 1375 164 68 85 chr1 60503729 60503867 -182160486 - MLT1D LTR MaLR -145 360 221 1615 158 11 22 chr1 60503867 60504145 -182160208 - AluJo SINE Alu -15 297 23 1375 164 68 85 chr1 60504145 60504165 -182160188 - MLT1D LTR MaLR -284 221 202 1673 159 14 17 chr1 60504165 60504460 -182159893 - AluJo SINE Alu -18 294 1 1375 164 68 85 chr1 60504460 60504666 -182159687 - MLT1D LTR MaLR -303 202 1 306 265 107 43 chr1 60504735 60504969 -182159384 + L2 LINE L2 1706 1954 -1360 725 294 94 44 chr1 60505095 60505500 -182158853 + L2 LINE L2 2884 3308 -5 1837 112 31 10 chr1 60505601 60505895 -182158458 + AluSx SINE Alu 1 300 -12 326 273 27 27 chr1 60505898 60506008 -182158345 - MER5A DNA MER1_type -79 110 1 2336 80 0 0 chr1 60506706 60507005 -182157348 - AluSx SINE Alu -13 299 1 1617 105 66 16 chr1 60507211 60507469 -182156884 + L1PA15 LINE L1 5891 6161 -4 1015 152 149 74 chr1 60507626 60507777 -182156576 - MER33 DNA MER1_type -2261 324 186 2169 103 0 3 chr1 60507777 60508069 -182156284 - AluSc SINE Alu -18 291 1 1015 152 149 74 chr1 60508069 60508233 -182156120 - MER33 DNA MER1_type -2399 186 1 6579 119 35 52 chr1 60508262 60508496 -182155857 + Tigger1 DNA MER2_type 1305 1541 -877 1826 135 24 10 chr1 60508496 60508785 -182155568 + AluJb SINE Alu 1 293 -19 6579 119 35 52 chr1 60508785 60508877 -182155476 + Tigger1 DNA MER2_type 1541 1633 -785 2395 96 0 0 chr1 60508877 60509189 -182155164 + AluSx SINE Alu 1 312 0 6579 119 35 52 chr1 60509189 60509991 -182154362 + Tigger1 DNA MER2_type 1633 2415 -3 587 264 91 19 chr1 60510774 60510982 -182153371 + MIR SINE MIR 40 262 0 2409 121 48 31 chr1 60511113 60511569 -182152784 - L1MB3 LINE L1 0 6183 5720 23 0 0 0 chr1 60512418 60512441 -182151912 + AT_rich Low_complexity Low_complexity 1 23 0 2311 62 26 13 chr1 60512469 60512775 -182151578 + AluY SINE Alu 1 310 -1 1952 83 69 3 chr1 60512959 60513248 -182151105 + AluSg SINE Alu 1 308 -2 862 118 0 22 chr1 60513258 60513394 -182150959 + AluJb SINE Alu 1 133 -179 826 234 67 5 chr1 60513398 60513592 -182150761 + MIR SINE MIR 53 256 -6 352 284 101 24 chr1 60514671 60514840 -182149513 - MIR SINE MIR -71 191 10 246 329 0 12 chr1 60516356 60516438 -182147915 + MIR3 SINE MIR 117 197 -11 364 152 0 30 chr1 60516717 60516783 -182147570 + L2 LINE L2 3246 3309 -4 2455 53 3 10 chr1 60516817 60517116 -182147237 - AluY SINE Alu -14 297 1 338 296 18 39 chr1 60517125 60517261 -182147092 - MIR SINE MIR -62 146 15 444 276 94 39 chr1 60517573 60517754 -182146599 + MIR3 SINE MIR 9 199 -9 1547 175 82 7 chr1 60518044 60518324 -182146029 + AluJo SINE Alu 1 301 -11 1755 100 12 4 chr1 60519106 60519355 -182144998 + AluSq SINE Alu 47 297 -16 2305 103 3 3 chr1 60519358 60519670 -182144683 + AluSp SINE Alu 1 312 -1 243 0 0 0 chr1 60520311 60520338 -182144015 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 442 209 150 26 chr1 60521636 60521771 -182142582 + MIR SINE MIR 4 148 -62 2649 40 0 0 chr1 60522316 60522615 -182141738 + AluY SINE Alu 1 299 -12 2111 128 3 3 chr1 60522646 60522944 -182141409 + AluSq SINE Alu 1 298 -15 262 184 231 41 chr1 60522991 60523138 -182141215 - L1ME4a LINE L1 -4 6117 5943 1123 264 23 38 chr1 60523148 60523493 -182140860 - L1ME4a LINE L1 -286 5835 5496 2191 102 7 3 chr1 60524211 60524506 -182139847 + AluSq SINE Alu 1 296 -17 352 265 71 35 chr1 60524539 60524585 -182139768 + L1MC4a LINE L1 5784 5827 -1981 2296 90 0 10 chr1 60524585 60524885 -182139468 + AluSc SINE Alu 1 297 -12 352 265 71 35 chr1 60524885 60525008 -182139345 + L1MC4a LINE L1 5827 5959 -1849 196 231 0 132 chr1 60526428 60526519 -182137834 + L2 LINE L2 2945 3023 -249 2401 89 0 3 chr1 60526519 60526821 -182137532 + AluSx SINE Alu 1 301 -11 547 219 47 56 chr1 60526845 60527060 -182137293 + L1ME4a LINE L1 5643 5855 -266 555 301 103 62 chr1 60527882 60528301 -182136052 + L2 LINE L2 2836 3271 -1 676 296 90 5 chr1 60530113 60530336 -182134017 - MIR SINE MIR -1 261 20 201 259 24 24 chr1 60531093 60531178 -182133175 + CT-rich Low_complexity Low_complexity 2 86 0 336 271 121 49 chr1 60531492 60531768 -182132585 + L1MDb LINE L1 834 1178 -5673 * 415 260 103 120 chr1 60531753 60532612 -182131741 - L1M2 LINE L1 -5442 1407 526 1903 126 17 0 chr1 60533587 60533881 -182130472 - AluSq SINE Alu -14 299 1 815 152 14 43 chr1 60533881 60534019 -182130334 - AluSq/x SINE Alu -177 135 2 1780 155 7 3 chr1 60534323 60534614 -182129739 + AluJb SINE Alu 2 293 -19 440 240 246 45 chr1 60534671 60534850 -182129503 - MER20 DNA MER1_type -4 215 1 447 280 42 48 chr1 60535223 60535391 -182128962 - L3 LINE CR1 -372 1205 1039 201 261 51 127 chr1 60535390 60535547 -182128806 + L2 LINE L2 3121 3265 -7 * 1411 288 143 37 chr1 60535573 60535658 -182128695 - L3 LINE CR1 -595 982 907 1565 227 62 0 chr1 60535658 60535979 -182128374 - MER58B DNA MER1_type 0 341 1 1411 288 143 37 chr1 60535979 60536620 -182127733 - L3 LINE CR1 -670 907 179 774 136 0 102 chr1 60536854 60536951 -182127402 + AluJo SINE Alu 1 80 -222 2305 83 7 0 chr1 60536951 60537240 -182127113 + AluSq SINE Alu 1 291 -22 774 136 0 102 chr1 60537240 60537289 -182127064 + AluJo SINE Alu 80 132 -170 289 143 0 0 chr1 60537296 60537338 -182127015 - Alu SINE Alu -252 50 9 1067 188 10 19 chr1 60537338 60537545 -182126808 + AluJo SINE Alu 107 311 -1 572 246 121 18 chr1 60537587 60537917 -182126436 - L1MEc LINE L1 -3977 2419 2056 2191 127 0 3 chr1 60538835 60539134 -182125219 - AluSg SINE Alu -12 298 1 2575 56 7 0 chr1 60539143 60539448 -182124905 - AluSp SINE Alu -4 309 3 282 310 101 13 chr1 60539529 60539687 -182124666 - MIR3 SINE MIR 0 208 37 192 217 0 0 chr1 60539970 60540016 -182124337 + (CATA)n Simple_repeat Simple_repeat 3 48 0 259 283 8 132 chr1 60540059 60540257 -182124096 - MIR3 SINE MIR -54 154 16 2054 124 7 7 chr1 60540826 60541117 -182123236 + AluSx SINE Alu 1 291 -21 622 118 0 0 chr1 60541293 60541378 -182122975 + FLAM_A SINE Alu 44 128 -14 301 218 23 83 chr1 60541558 60541691 -182122662 + MIR SINE MIR 82 206 -56 1281 110 0 0 chr1 60541779 60541943 -182122410 - AluSg/x SINE Alu -15 297 134 2059 103 0 87 chr1 60541943 60542264 -182122089 - AluSg SINE Alu -17 293 1 29 60 0 0 chr1 60542353 60542403 -182121950 + AT_rich Low_complexity Low_complexity 1 50 0 821 148 0 63 chr1 60542471 60542613 -182121740 + FLAM_C SINE Alu 1 133 0 2181 149 16 92 chr1 60542641 60542961 -182121392 - L1MB8 LINE L1 -5 6173 5830 1864 108 4 0 chr1 60542961 60543210 -182121143 - AluSc SINE Alu -59 250 1 1889 188 0 0 chr1 60543218 60543527 -182120826 - AluSx SINE Alu -3 309 1 2181 149 16 92 chr1 60543527 60543687 -182120666 - L1MB8 LINE L1 -355 5823 5721 * 4678 227 48 31 chr1 60543683 60544810 -182119543 + L1ME2 LINE L1 1306 2412 -3803 2506 65 3 0 chr1 60544810 60545116 -182119237 + AluY SINE Alu 1 307 -4 4678 227 48 31 chr1 60545116 60545388 -182118965 + L1ME2 LINE L1 2412 2678 -3537 1738 158 0 4 chr1 60545388 60545661 -182118692 + AluJb SINE Alu 11 282 -30 4678 227 48 31 chr1 60545661 60545892 -182118461 + L1ME2 LINE L1 2678 2904 -3311 1832 138 64 0 chr1 60545892 60546174 -182118179 - AluSx SINE Alu -12 300 1 4678 227 48 31 chr1 60546174 60546850 -182117503 + L1ME2 LINE L1 2904 3764 -2451 1066 168 50 0 chr1 60546851 60547053 -182117300 + L1ME2 LINE L1 5613 5824 -409 887 214 50 10 chr1 60547098 60547299 -182117054 + L1ME2 LINE L1 6025 6233 0 267 326 127 44 chr1 60547409 60548002 -182116351 - L2 LINE L2 -9 3263 2607 23 0 0 0 chr1 60548220 60548243 -182116110 + AT_rich Low_complexity Low_complexity 1 23 0 1303 253 92 40 chr1 60548738 60549216 -182115137 - LTR33 LTR ERVL 0 521 19 503 299 160 5 chr1 60549301 60549495 -182114858 + MIR SINE MIR 29 252 -10 242 356 45 30 chr1 60550010 60550142 -182114211 + MIR SINE MIR 47 180 -82 981 322 79 55 chr1 60550283 60551104 -182113249 + HAL1 LINE L1 37 877 -1630 445 219 147 123 chr1 60551098 60551218 -182113135 + L1MC5 LINE L1 7308 7424 -537 * 1808 168 0 20 chr1 60551218 60551521 -182112832 + AluJo SINE Alu 1 297 -15 445 219 147 123 chr1 60551521 60551805 -182112548 + L1MC5 LINE L1 7424 7700 -261 1635 180 0 21 chr1 60551805 60552094 -182112259 + AluJb SINE Alu 14 296 -16 445 219 147 123 chr1 60552094 60552145 -182112208 + L1MC5 LINE L1 7700 7748 -213 1929 114 86 4 chr1 60552145 60552425 -182111928 - AluSx SINE Alu -9 303 1 445 219 147 123 chr1 60552425 60552549 -182111804 + L1MC5 LINE L1 7748 7906 -55 2467 85 0 16 chr1 60552549 60552865 -182111488 - AluY SINE Alu 0 311 1 445 219 147 123 chr1 60552865 60552881 -182111472 + L1MC5 LINE L1 7906 7920 -41 367 262 85 0 chr1 60552890 60553031 -182111322 + HAL1 LINE L1 2012 2164 -343 308 310 0 40 chr1 60553169 60553269 -182111084 + HAL1 LINE L1 2349 2444 -63 2457 69 0 3 chr1 60553385 60553689 -182110664 - AluY SINE Alu -8 303 1 21 57 0 0 chr1 60553976 60554011 -182110342 + AT_rich Low_complexity Low_complexity 1 35 0 443 291 209 39 chr1 60555278 60555742 -182108611 - L1ME4a LINE L1 -32 6089 5547 2367 90 3 0 chr1 60555832 60556131 -182108222 - AluSp SINE Alu -13 300 1 666 147 138 0 chr1 60556153 60556262 -182108091 + AluJb SINE Alu 3 126 -186 1864 153 7 0 chr1 60557066 60557353 -182107000 - AluJb SINE Alu -23 289 1 704 174 146 14 chr1 60557414 60557558 -182106795 - FRAM SINE Alu -13 163 1 1139 210 89 104 chr1 60557582 60558147 -182106206 + L1MC4 LINE L1 6636 7176 -866 1794 162 0 29 chr1 60558147 60558455 -182105898 + AluJo SINE Alu 3 301 -11 1139 210 89 104 chr1 60558455 60558535 -182105818 + L1MC4 LINE L1 7176 7256 -786 732 222 89 73 chr1 60558587 60558902 -182105451 - MLT1H LTR MaLR 0 549 230 2156 117 3 3 chr1 60559105 60559403 -182104950 + AluSq SINE Alu 1 298 -15 399 187 71 97 chr1 60559460 60559615 -182104738 + L1MC5 LINE L1 7249 7399 -562 547 305 56 42 chr1 60559626 60559911 -182104442 + MLT1I LTR MaLR 3 291 -118 656 211 0 8 chr1 60560085 60560208 -182104145 + MLT1I LTR MaLR 286 407 -2 261 244 84 120 chr1 60560208 60560398 -182103955 + L1MC4 LINE L1 7509 7691 -351 2281 106 0 3 chr1 60560398 60560700 -182103653 - AluSq SINE Alu -12 301 1 261 244 84 120 chr1 60560700 60560734 -182103619 + L1MC4 LINE L1 7691 7725 -317 343 267 69 55 chr1 60560856 60561058 -182103295 + L1MC5 LINE L1 7716 7920 -41 2223 103 0 7 chr1 60561084 60561384 -182102969 - AluSq SINE Alu -15 298 1 1835 150 27 7 chr1 60562048 60562341 -182102012 - AluJb SINE Alu -13 299 1 444 310 29 77 chr1 60562356 60562669 -182101684 + L2 LINE L2 2828 3125 -188 663 242 22 22 chr1 60562917 60563099 -182101254 + L2 LINE L2 3132 3313 0 460 260 51 34 chr1 60563515 60563692 -182100661 + L1ME LINE L1 5561 5740 -381 180 125 0 0 chr1 60563756 60563788 -182100565 + (TA)n Simple_repeat Simple_repeat 1 32 0 1361 215 72 39 chr1 60564225 60564599 -182099754 - MLT1B LTR MaLR 0 432 1 2094 193 28 39 chr1 60564826 60565283 -182099070 - LTR16A1 LTR ERVL -5 452 1 1097 201 0 0 chr1 60565284 60565473 -182098880 + MER5A DNA MER1_type 1 189 0 320 302 64 123 chr1 60565531 60565889 -182098464 + L2 LINE L2 2887 3223 -49 415 267 254 0 chr1 60566334 60566499 -182097854 - MIR SINE MIR 0 262 56 * 720 206 83 34 chr1 60566486 60566690 -182097663 + MIR SINE MIR 21 234 -28 762 133 25 8 chr1 60566700 60566820 -182097533 - AluSg/x SINE Alu -23 289 168 238 310 56 100 chr1 60568670 60568811 -182095542 + L2 LINE L2 2549 2695 -619 2182 110 0 0 chr1 60568811 60569110 -182095243 - AluSx SINE Alu -13 299 1 238 310 56 100 chr1 60569110 60569125 -182095228 + L2 LINE L2 2695 2709 -605 2119 98 7 7 chr1 60569125 60569422 -182094931 - AluSx SINE Alu -3 309 13 238 310 56 100 chr1 60569422 60569712 -182094641 + L2 LINE L2 2709 2976 -338 682 237 29 0 chr1 60569762 60569901 -182094452 + MER58B DNA MER1_type 199 341 0 2408 79 0 0 chr1 60569998 60570302 -182094051 - AluSg SINE Alu -6 304 1 2320 88 3 0 chr1 60570307 60570614 -182093739 - AluSp SINE Alu -5 308 1 224 167 0 0 chr1 60571233 60571269 -182093084 + MIR SINE MIR 84 119 -89 2257 90 10 10 chr1 60571290 60571602 -182092751 + AluSx SINE Alu 1 312 0 463 258 22 45 chr1 60571739 60571918 -182092435 - MIR SINE MIR -52 156 3 252 273 13 26 chr1 60572287 60572364 -182091989 - MIR SINE MIR -110 98 23 347 269 255 0 chr1 60572388 60572533 -182091820 - MER5A DNA MER1_type 0 189 8 659 225 98 12 chr1 60572548 60572721 -182091632 + MER5A DNA MER1_type 1 188 -1 1806 155 3 23 chr1 60572769 60573078 -182091275 + AluJb SINE Alu 1 303 -9 428 311 103 20 chr1 60573904 60574057 -182090296 - MIR3 SINE MIR -60 148 14 509 285 58 0 chr1 60574059 60574196 -182090157 + MIR SINE MIR 115 259 -3 2929 220 102 88 chr1 60574278 60574385 -182089968 - MER45C DNA AcHobo -628 953 849 2137 89 27 0 chr1 60574385 60574677 -182089676 - AluSx SINE Alu -12 300 1 2929 220 102 88 chr1 60574677 60575509 -182088844 - MER45C DNA AcHobo -732 849 1 745 328 116 19 chr1 60575761 60576274 -182088079 - L2 LINE L2 -2 3311 2754 1101 159 0 0 chr1 60576319 60576489 -182087864 - FAM SINE Alu 0 49 1 225 208 21 0 chr1 60576931 60576979 -182087374 + LTR67 LTR ERVL 509 557 0 405 263 66 56 chr1 60576992 60577116 -182087237 - L2 LINE L2 -594 2720 2592 1543 183 0 47 chr1 60577116 60577433 -182086920 + AluJo SINE Alu 3 304 -8 405 263 66 56 chr1 60577433 60577506 -182086847 - L2 LINE L2 -722 2592 2521 2125 123 0 0 chr1 60577620 60577922 -182086431 - AluSx SINE Alu -10 302 1 1173 149 48 0 chr1 60578362 60578570 -182085783 + AluJo SINE Alu 87 304 -8 205 288 123 0 chr1 60578858 60578931 -182085422 - MIR3 SINE MIR -40 168 87 185 94 31 0 chr1 60579137 60579169 -182085184 + (TG)n Simple_repeat Simple_repeat 1 33 0 560 270 101 0 chr1 60579229 60579377 -182084976 + MIR3 SINE MIR 16 178 -30 2300 93 0 0 chr1 60579480 60579781 -182084572 - AluSx SINE Alu -11 301 1 281 315 60 60 chr1 60579785 60580052 -182084301 + L2 LINE L2 2695 2961 -353 1568 199 3 3 chr1 60580362 60580673 -182083680 - AluJb SINE Alu -1 311 1 2077 96 0 0 chr1 60580732 60581039 -182083314 - AluSx SINE Alu 0 318 12 299 365 62 19 chr1 60581363 60581571 -182082782 + L2 LINE L2 2958 3174 -98 2014 151 0 0 chr1 60581726 60582038 -182082315 + AluJb SINE Alu 1 312 0 244 269 57 128 chr1 60582092 60582497 -182081856 - L2 LINE L2 -31 3241 2866 2067 110 0 10 chr1 60582809 60583101 -182081252 - AluSg SINE Alu -21 289 1 453 314 42 94 chr1 60583109 60583491 -182080862 - L2 LINE L2 -9 3263 2902 2167 106 0 0 chr1 60584487 60584788 -182079565 - AluSx SINE Alu -11 301 1 612 315 49 60 chr1 60584923 60585288 -182079065 - L2 LINE L2 -54 3218 2858 1265 168 48 34 chr1 60585311 60585602 -182078751 - AluJo SINE Alu -17 295 1 2222 94 3 0 chr1 60585652 60585950 -182078403 - AluSx SINE Alu -13 299 1 1022 279 66 78 chr1 60585953 60586480 -182077873 - HERVL LTR ERVL -738 5026 4506 191 239 254 0 chr1 60586517 60586584 -182077769 + L3 LINE CR1 178 261 -1316 490 316 42 32 chr1 60586621 60586934 -182077419 - HERVL LTR ERVL -5050 604 289 234 317 28 49 chr1 60587245 60587387 -182076966 - LTR16C LTR ERVL -54 437 299 297 201 50 30 chr1 60587794 60587903 -182076450 + MIR SINE MIR 98 208 -54 23 0 0 0 chr1 60588587 60588610 -182075743 + GC_rich Low_complexity Low_complexity 1 23 0 621 245 120 23 chr1 60588679 60588895 -182075458 - MIR SINE MIR -24 238 2 277 320 0 0 chr1 60589604 60589679 -182074674 - L2 LINE L2 -9 3263 3189 332 303 92 32 chr1 60589748 60589933 -182074420 - L2 LINE L2 -2 3311 3116 201 39 0 0 chr1 60589993 60590019 -182074334 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1955 126 0 0 chr1 60590020 60590298 -182074055 - AluSg SINE Alu -32 278 1 856 264 88 9 chr1 60590312 60590528 -182073825 - MIR SINE MIR -7 255 23 1302 304 75 13 chr1 60590595 60590864 -182073489 + L2 LINE L2 2493 2744 -569 2175 91 23 7 chr1 60590864 60591171 -182073182 + AluSx SINE Alu 1 312 0 1302 304 75 13 chr1 60591171 60591447 -182072906 + L2 LINE L2 2744 3074 -239 213 322 22 22 chr1 60591559 60591649 -182072704 - L2 LINE L2 -455 2859 2770 303 288 152 51 chr1 60591956 60592213 -182072140 + L2 LINE L2 2871 3153 -119 1006 131 25 6 chr1 60592235 60592395 -182071958 - L1MA3 LINE L1 0 6305 6143 2001 139 3 0 chr1 60592395 60592705 -182071648 - AluSx SINE Alu -1 311 1 1136 95 0 24 chr1 60592719 60592887 -182071466 - AluSc SINE Alu -12 297 134 485 298 55 22 chr1 60593040 60593221 -182071132 - MIR SINE MIR -64 198 12 442 310 13 13 chr1 60593472 60593630 -182070723 + L1ME4a LINE L1 5499 5656 -465 339 190 0 0 chr1 60593825 60593883 -182070470 + L2 LINE L2 3256 3313 0 255 246 0 0 chr1 60593918 60593975 -182070378 + L1ME4a LINE L1 5978 6034 -87 934 190 0 17 chr1 60593976 60594155 -182070198 - AluJb SINE Alu 0 312 137 2101 113 7 3 chr1 60594186 60594488 -182069865 - AluSx SINE Alu -9 303 1 471 292 47 42 chr1 60594607 60594799 -182069554 - MIR SINE MIR -65 197 5 254 306 231 0 chr1 60595187 60595295 -182069058 - L2 LINE L2 -21 3251 3119 285 318 60 85 chr1 60595388 60595485 -182068868 - L3 LINE CR1 -13 1564 1473 1981 148 0 3 chr1 60595485 60595796 -182068557 + AluJb SINE Alu 1 310 -2 285 318 60 85 chr1 60595796 60595899 -182068454 - L3 LINE CR1 -104 1473 1369 8195 117 14 35 chr1 60595902 60596969 -182067384 - L1PA11 LINE L1 -3 6171 5102 2129 89 62 0 chr1 60596969 60597261 -182067092 - AluSg SINE Alu 0 310 1 8195 117 14 35 chr1 60597261 60598290 -182066063 - L1PA11 LINE L1 -1072 5102 4053 1072 221 5 0 chr1 60598296 60598504 -182065849 - L1PA12 LINE L1 -7360 221 13 1823 161 3 0 chr1 60598851 60599142 -182065211 + AluJo SINE Alu 2 293 -19 194 208 21 21 chr1 60599235 60599283 -182065070 - MIR SINE MIR -73 135 88 1243 181 150 15 chr1 60600162 60600428 -182063925 + AluJo SINE Alu 1 302 0 384 284 95 35 chr1 60600748 60600917 -182063436 - MIR SINE MIR -20 242 64 248 284 137 11 chr1 60601040 60601135 -182063218 + L2 LINE L2 3151 3257 -15 232 265 96 24 chr1 60601123 60601206 -182063147 - L2 LINE L2 -14 3258 3170 * 373 304 137 54 chr1 60601227 60601388 -182062965 - MIR SINE MIR -7 255 72 1052 209 19 27 chr1 60601388 60601651 -182062702 - MIR SINE MIR 0 262 2 373 304 137 54 chr1 60601651 60601693 -182062660 - MIR SINE MIR -190 72 35 289 249 198 30 chr1 60601850 60602087 -182062266 + L1MC4a LINE L1 5123 5399 -747 1141 255 95 7 chr1 60602181 60602712 -182061641 - L2 LINE L2 0 3313 2719 1823 145 0 7 chr1 60602714 60603011 -182061342 - AluJo SINE Alu -17 295 1 517 241 116 61 chr1 60603054 60603456 -182060897 + L1MC4a LINE L1 5494 5860 -310 23 0 0 29 chr1 60603456 60603471 -182060882 + AT_rich Low_complexity Low_complexity 1 15 -18 2065 111 3 3 chr1 60603471 60603759 -182060594 - AluSx SINE Alu -24 288 1 23 0 0 29 chr1 60603759 60603777 -182060576 + AT_rich Low_complexity Low_complexity 15 33 0 22 80 0 0 chr1 60603833 60603883 -182060470 + AT_rich Low_complexity Low_complexity 1 50 0 220 351 35 0 chr1 60604036 60604150 -182060203 - L2 LINE L2 -481 2833 2716 806 109 0 0 chr1 60604414 60604524 -182059829 - AluJb SINE Alu -194 118 9 970 180 12 0 chr1 60604542 60604709 -182059644 - FAM SINE Alu -3 172 4 415 269 207 17 chr1 60604717 60605127 -182059226 + L2 LINE L2 2749 3239 -33 261 319 66 47 chr1 60605759 60606016 -182058337 + L1MC4a LINE L1 5770 6031 -1777 228 57 0 0 chr1 60606130 60606165 -182058188 - L1MA1 LINE L1 0 6302 6268 225 0 0 0 chr1 60606213 60606238 -182058115 + (CA)n Simple_repeat Simple_repeat 1 25 0 453 128 128 0 chr1 60607060 60607146 -182057207 - L1MB4 LINE L1 -1 6179 6083 1884 142 3 19 chr1 60607207 60607518 -182056835 - AluJb SINE Alu -6 306 1 1960 127 6 19 chr1 60607768 60608083 -182056270 + AluJo SINE Alu 1 311 -1 2047 87 42 0 chr1 60608085 60608371 -182055982 + AluSg SINE Alu 1 298 -12 928 251 46 8 chr1 60608655 60608894 -182055459 + MIR SINE MIR 15 262 0 270 0 0 0 chr1 60609053 60609083 -182055270 + (TG)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chr1 60609082 60609112 -182055241 + (GA)n Simple_repeat Simple_repeat 1 30 0 183 171 114 0 chr1 60609183 60609218 -182055135 + MIR SINE MIR 34 72 -190 374 319 68 48 chr1 60609556 60609698 -182054655 + MIR SINE MIR 48 197 -65 607 247 63 43 chr1 60609698 60609953 -182054400 - MIR SINE MIR -1 261 2 374 319 68 48 chr1 60609953 60610017 -182054336 + MIR SINE MIR 197 258 -4 2510 24 27 0 chr1 60610580 60610876 -182053477 + AluY SINE Alu 1 304 -7 382 222 0 25 chr1 60611110 60611191 -182053162 - L2 LINE L2 0 3313 3235 1579 163 0 61 chr1 60612144 60612457 -182051896 + AluSg SINE Alu 1 294 -16 916 204 128 53 chr1 60612620 60612939 -182051414 + MER2 DNA MER2_type 1 343 -1 656 304 60 5 chr1 60613201 60613418 -182050935 + MIR SINE MIR 21 249 -13 1879 168 0 7 chr1 60614202 60614505 -182049848 + AluSx SINE Alu 1 301 -11 254 261 98 0 chr1 60614673 60614776 -182049577 + MIR SINE MIR 79 152 -56 274 306 149 8 chr1 60615281 60615402 -182048951 + MIR3 SINE MIR 3 140 -68 491 274 151 5 chr1 60615937 60616149 -182048204 + MIR SINE MIR 20 262 0 1988 141 7 0 chr1 60616222 60616512 -182047841 - AluSx SINE Alu -20 292 1 460 190 0 17 chr1 60616532 60616648 -182047705 + CT-rich Low_complexity Low_complexity 3 116 0 518 295 0 0 chr1 60616698 60616827 -182047526 - MIR3 SINE MIR -43 165 37 199 270 135 22 chr1 60617580 60617669 -182046684 - L2 LINE L2 -5 3308 3210 668 278 48 5 chr1 60617678 60617887 -182046466 + MIR SINE MIR 1 218 -44 2382 95 0 9 chr1 60618546 60618862 -182045491 - AluSq SINE Alu 0 313 1 330 271 115 16 chr1 60619026 60619148 -182045205 + L2 LINE L2 3139 3272 0 1765 169 0 4 chr1 60619318 60619591 -182044762 + AluJb SINE Alu 11 282 -30 400 285 122 12 chr1 60619608 60619780 -182044573 + MIR SINE MIR 57 247 -15 383 195 62 26 chr1 60620074 60620187 -182044166 - MIR3 SINE MIR -6 202 86 2378 93 0 3 chr1 60620243 60620544 -182043809 - AluSg SINE Alu -10 300 1 210 284 80 11 chr1 60620612 60620700 -182043653 - MIR SINE MIR -70 138 45 1923 220 117 31 chr1 60620893 60621439 -182042914 - MLT1E LTR MaLR 0 593 1 1923 170 58 0 chr1 60622414 60622743 -182041610 - MER7A DNA MER2_type 0 346 1 279 366 65 30 chr1 60623161 60623393 -182040960 + L2 LINE L2 2981 3220 -52 181 280 20 0 chr1 60623523 60623573 -182040780 - L2 LINE L2 -73 3199 3149 2175 127 0 7 chr1 60623972 60624271 -182040082 - AluSx SINE Alu -10 302 6 25 0 0 0 chr1 60624978 60625003 -182039350 + AT_rich Low_complexity Low_complexity 1 25 0 287 316 53 0 chr1 60625006 60625101 -182039252 + L2 LINE L2 3123 3222 -50 542 228 0 24 chr1 60625919 60626046 -182038307 - L2 LINE L2 -1 3312 3189 300 239 137 0 chr1 60626123 60626240 -182038113 - L3 LINE CR1 -224 1353 1221 839 128 68 0 chr1 60626245 60626378 -182037975 - FRAM SINE Alu -15 161 20 554 278 128 67 chr1 60626710 60626931 -182037422 - MLT1J LTR MaLR -11 500 294 2143 221 130 13 chr1 60626931 60627547 -182036806 + MER76 LTR ERV 1 688 0 554 278 128 67 chr1 60627547 60627785 -182036568 - MLT1J LTR MaLR -217 294 13 978 104 0 30 chr1 60629073 60629208 -182035145 - AluY SINE Alu -125 186 56 219 36 0 0 chr1 60629356 60629384 -182034969 + (TA)n Simple_repeat Simple_repeat 1 28 0 277 234 26 26 chr1 60629486 60629563 -182034790 - MIR SINE MIR -179 83 7 219 328 69 0 chr1 60629911 60630027 -182034326 + L2 LINE L2 3149 3272 0 1076 262 27 44 chr1 60630105 60630150 -182034203 - MLT1I LTR MaLR -1 408 364 2335 68 0 17 chr1 60630150 60630484 -182033869 + AluY SINE Alu 1 311 0 1076 262 27 44 chr1 60630484 60630804 -182033549 - MLT1I LTR MaLR -45 364 49 970 90 0 37 chr1 60630914 60631081 -182033272 + AluSg/x SINE Alu 153 314 0 392 252 31 24 chr1 60631101 60631228 -182033125 - MIR SINE MIR -106 156 29 21 0 0 0 chr1 60631696 60631717 -182032636 + AT_rich Low_complexity Low_complexity 1 21 0 2095 103 33 0 chr1 60631904 60632203 -182032150 - AluSp SINE Alu 0 308 1 242 204 112 31 chr1 60632624 60632722 -182031631 - HAL1b LINE L1 -1181 167 62 2295 104 0 43 chr1 60632891 60633217 -182031136 - AluSx SINE Alu 0 312 1 372 119 0 0 chr1 60633270 60633329 -182031024 - AluSp/q SINE Alu -2 301 243 2237 112 0 16 chr1 60633688 60634000 -182030353 - AluSc SINE Alu -2 307 1 353 256 139 29 chr1 60634373 60634545 -182029808 - L2 LINE L2 -2 3311 3121 2310 101 3 3 chr1 60634555 60634852 -182029501 + AluSx SINE Alu 1 297 -15 1282 243 73 62 chr1 60634857 60635310 -182029043 - MLT1J LTR MaLR -53 458 1 1702 138 52 31 chr1 60635357 60635532 -182028821 - AluJb SINE Alu -16 296 111 219 36 0 0 chr1 60635532 60635560 -182028793 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1702 138 52 31 chr1 60635560 60635674 -182028679 - AluJb SINE Alu -201 111 1 302 269 115 8 chr1 60636117 60636247 -182028106 - MIR SINE MIR -71 191 48 2063 119 10 7 chr1 60637581 60637875 -182026478 - AluSx SINE Alu -17 295 1 31 0 0 0 chr1 60637877 60637908 -182026445 + AT_rich Low_complexity Low_complexity 1 31 0 434 255 0 0 chr1 60637914 60638016 -182026337 - FLAM_A SINE Alu -39 103 2 753 114 38 15 chr1 60638019 60638151 -182026202 - L1MB5 LINE L1 -326 5848 5714 1379 140 0 4 chr1 60638166 60638395 -182025958 - L1MB5 LINE L1 -958 5188 4961 1615 121 117 0 chr1 60638396 60638652 -182025701 + AluSx SINE Alu 1 286 -26 297 125 18 0 chr1 60638696 60638752 -182025601 - AluSp/q SINE Alu 0 303 247 1028 116 7 20 chr1 60638752 60638899 -182025454 - AluSq/x SINE Alu -167 145 1 197 265 24 114 chr1 60638917 60639083 -182025270 + L2 LINE L2 2623 2773 -541 1687 142 97 0 chr1 60640073 60640340 -182024013 - AluSx SINE Alu -19 293 1 349 310 152 22 chr1 60640411 60640595 -182023758 - MIR SINE MIR -2 260 53 245 299 58 0 chr1 60640864 60640951 -182023402 - MER117 DNA MER1_type -103 94 3 1389 119 190 28 chr1 60641083 60641336 -182023017 + AluSg SINE Alu 1 294 -6 21 0 0 0 chr1 60641430 60641451 -182022902 + AT_rich Low_complexity Low_complexity 1 21 0 1673 147 98 0 chr1 60641730 60642015 -182022338 + AluSq SINE Alu 1 313 0 1398 162 17 4 chr1 60642145 60642380 -182021973 - AluJb SINE Alu -21 291 54 1491 135 71 0 chr1 60642870 60643137 -182021216 + L1MB3 LINE L1 5897 6182 -1 2371 75 14 0 chr1 60643476 60643769 -182020584 - AluSc SINE Alu -12 297 1 24 32 0 0 chr1 60643777 60643808 -182020545 + AT_rich Low_complexity Low_complexity 1 31 0 29 21 0 21 chr1 60643907 60643936 -182020417 + AT_rich Low_complexity Low_complexity 1 30 -16 2314 83 0 14 chr1 60643936 60644226 -182020127 - AluY SINE Alu -25 286 1 29 21 0 21 chr1 60644226 60644243 -182020110 + AT_rich Low_complexity Low_complexity 30 46 0 2409 81 0 3 chr1 60644291 60644587 -182019766 - AluSp SINE Alu -18 295 1 2235 100 0 0 chr1 60644713 60644994 -182019359 - AluSx SINE Alu -31 281 1 2126 131 0 0 chr1 60644998 60645295 -182019058 - AluSg SINE Alu -13 297 1 356 370 124 9 chr1 60645491 60645821 -182018532 - L2 LINE L2 -2 3270 2903 2403 89 0 7 chr1 60646254 60646588 -182017765 + AluSq SINE Alu 1 313 0 318 161 32 16 chr1 60646592 60646654 -182017699 + MER31A LTR ERV1 347 409 -76 21 0 0 0 chr1 60647587 60647608 -182016745 + AT_rich Low_complexity Low_complexity 1 21 0 949 177 6 0 chr1 60647726 60647884 -182016469 + FAM SINE Alu 1 159 -16 1885 107 85 0 chr1 60649700 60649972 -182014381 - AluSx SINE Alu -17 295 1 1913 142 7 3 chr1 60649979 60650274 -182014079 - AluJb SINE Alu -16 296 1 707 181 0 0 chr1 60650765 60650881 -182013472 + FLAM_C SINE Alu 2 117 -26 1587 161 76 3 chr1 60650902 60651193 -182013160 - AluJo SINE Alu 0 312 1 22 0 0 0 chr1 60652373 60652395 -182011958 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr1 60652465 60652496 -182011857 + AT_rich Low_complexity Low_complexity 1 31 0 1251 121 0 0 chr1 60652823 60652989 -182011364 - AluSq SINE Alu -22 291 126 222 235 15 15 chr1 60653134 60653202 -182011151 + A-rich Low_complexity Low_complexity 2 69 0 232 277 0 31 chr1 60653302 60653367 -182010986 + MIR SINE MIR 194 256 -6 1772 157 10 32 chr1 60653701 60654014 -182010339 - AluSx SINE Alu -6 306 1 1961 155 16 3 chr1 60654160 60654464 -182009889 + AluSx SINE Alu 1 308 -4 1257 26 33 0 chr1 60654621 60654772 -182009581 - L1PA4 LINE L1 0 6155 6000 904 103 135 13 chr1 60654823 60654881 -182009472 - MER30 DNA MER1_type -55 175 125 2268 125 0 3 chr1 60654881 60655194 -182009159 - AluSx SINE Alu 0 312 1 195 42 0 0 chr1 60655196 60655220 -182009133 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 904 103 135 13 chr1 60655220 60655314 -182009039 - MER30 DNA MER1_type -105 125 1 191 330 110 11 chr1 60655391 60655482 -182008871 - MIR SINE MIR -93 115 16 873 272 15 15 chr1 60655530 60655791 -182008562 + MIR SINE MIR 2 262 0 25 0 0 0 chr1 60655896 60655921 -182008432 + AT_rich Low_complexity Low_complexity 1 25 0 2135 142 32 32 chr1 60656364 60656720 -182007633 + L1MB2 LINE L1 5768 6126 -45 2160 96 34 14 chr1 60656720 60657011 -182007342 - AluSx SINE Alu -15 297 1 2135 142 32 32 chr1 60657011 60657056 -182007297 + L1MB2 LINE L1 6125 6169 -2 15419 195 35 16 chr1 60657522 60660779 -182003574 - L1PB1 LINE L1 0 6867 3672 2364 66 0 7 chr1 60660779 60661094 -182003259 - AluY SINE Alu 0 313 1 15419 195 35 16 chr1 60661094 60664399 -181999954 - L1PB1 LINE L1 -3195 3672 6 893 154 0 0 chr1 60664413 60664543 -181999810 - FLAM_C SINE Alu -3 130 1 536 181 0 39 chr1 60664629 60664756 -181999597 - Tigger6a DNA MER2_type -600 483 362 658 91 0 73 chr1 60664782 60664892 -181999461 - U6 snRNA snRNA -5 102 1 1962 188 30 3 chr1 60664895 60665256 -181999097 - Tigger6a DNA MER2_type -712 371 1 1241 117 0 0 chr1 60665643 60665806 -181998547 + FRAM SINE Alu 1 156 -20 351 314 33 35 chr1 60666588 60666822 -181997531 - MIR SINE MIR 0 262 32 2159 119 10 10 chr1 60667891 60668201 -181996152 - AluSx SINE Alu -2 310 1 2657 14 0 0 chr1 60669080 60669373 -181994980 - AluY SINE Alu -18 293 1 1424 166 3 73 chr1 60669691 60669980 -181994373 + AluJo SINE Alu 32 300 -12 26 74 0 0 chr1 60670026 60670080 -181994273 + AT_rich Low_complexity Low_complexity 1 54 0 269 315 268 17 chr1 60670117 60670352 -181994001 - L2 LINE L2 0 3272 2979 2252 123 0 0 chr1 60670389 60670690 -181993663 + AluSx SINE Alu 1 301 -11 233 356 64 55 chr1 60670698 60670900 -181993453 - L2 LINE L2 -47 3225 3022 21 0 0 0 chr1 60671115 60671136 -181993217 + AT_rich Low_complexity Low_complexity 1 21 0 2443 71 0 0 chr1 60671295 60671592 -181992761 + AluY SINE Alu 1 297 -14 1804 173 0 3 chr1 60671799 60672082 -181992271 + AluJb SINE Alu 1 282 -30 308 324 159 28 chr1 60672099 60672275 -181992078 - MIR3 SINE MIR -7 201 3 1544 194 3 41 chr1 60672488 60672781 -181991572 - AluJo SINE Alu -30 282 1 1992 104 52 0 chr1 60673137 60673406 -181990947 + AluSx SINE Alu 15 297 -15 2292 75 38 0 chr1 60674541 60674833 -181989520 + AluSc SINE Alu 1 303 -6 278 141 0 19 chr1 60674970 60675031 -181989322 + L1MA9 LINE L1 6231 6290 -1 702 283 25 43 chr1 60675380 60675656 -181988697 - MER102b DNA MER1_type -27 314 44 359 263 139 15 chr1 60675796 60675933 -181988420 - L2 LINE L2 0 3313 3160 244 305 71 21 chr1 60675985 60676126 -181988227 - L2 LINE L2 -500 2814 2667 2226 143 0 0 chr1 60676311 60676619 -181987734 + AluSx SINE Alu 1 308 -4 2012 128 3 3 chr1 60676699 60677033 -181987320 + AluSc SINE Alu 1 309 0 1959 169 10 0 chr1 60677239 60677547 -181986806 + AluJb SINE Alu 1 311 -1 391 299 83 0 chr1 60678675 60678819 -181985534 - L2 LINE L2 -5 3308 3153 299 194 104 0 chr1 60678859 60678926 -181985427 - MER104 DNA Tc2 -51 129 56 3490 243 106 37 chr1 60678977 60680282 -181984071 - L2 LINE L2 -177 3136 1700 1728 149 7 40 chr1 60680282 60680578 -181983775 - AluJo SINE Alu -26 286 1 3490 243 106 37 chr1 60680578 60680647 -181983706 - L2 LINE L2 -1613 1700 1637 1869 154 0 0 chr1 60680911 60681183 -181983170 + AluJo SINE Alu 22 293 -19 1813 160 7 10 chr1 60681295 60681588 -181982765 + AluJo SINE Alu 21 312 0 21 0 0 0 chr1 60681609 60681630 -181982723 + AT_rich Low_complexity Low_complexity 1 21 0 2372 76 0 0 chr1 60682924 60683225 -181981128 + AluY SINE Alu 1 301 -10 671 201 83 13 chr1 60683231 60683435 -181980918 - MIR SINE MIR -3 259 41 1263 154 32 44 chr1 60683660 60683713 -181980640 + L1MA4A LINE L1 5819 5871 -432 1879 59 4 66 chr1 60683713 60683984 -181980369 - AluY SINE Alu -13 298 45 1263 154 32 44 chr1 60683984 60684336 -181980017 + L1MA4A LINE L1 5871 6280 -23 207 0 0 0 chr1 60684423 60684446 -181979907 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2156 106 3 3 chr1 60684448 60684741 -181979612 - AluSx SINE Alu -19 293 1 23 0 0 0 chr1 60684741 60684764 -181979589 + AT_rich Low_complexity Low_complexity 1 23 0 2286 103 0 19 chr1 60684764 60685083 -181979270 - AluSq SINE Alu 0 313 1 1760 158 4 0 chr1 60685085 60685344 -181979009 - AluSx SINE Alu -52 260 1 2244 78 63 3 chr1 60685348 60685632 -181978721 - AluSq SINE Alu -12 301 1 249 242 32 0 chr1 60685728 60685790 -181978563 - MIR SINE MIR -79 129 66 27 29 0 0 chr1 60685823 60685857 -181978496 + AT_rich Low_complexity Low_complexity 1 34 0 1550 157 47 74 chr1 60686254 60686439 -181977914 - AluJb SINE Alu -15 297 122 2210 102 3 3 chr1 60686439 60686733 -181977620 + AluSq SINE Alu 1 294 -19 1550 157 47 74 chr1 60686733 60686846 -181977507 - AluJb SINE Alu -190 122 7 1329 151 0 23 chr1 60686852 60687071 -181977282 - AluJo SINE Alu -13 299 86 238 215 280 43 chr1 60687210 60687396 -181976957 + L2 LINE L2 3013 3242 -71 402 21 0 0 chr1 60687468 60687515 -181976838 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1774 149 43 0 chr1 60687518 60687799 -181976554 - AluJb SINE Alu -19 293 1 1743 157 7 21 chr1 60688181 60688467 -181975886 + AluJo SINE Alu 12 293 -19 1891 158 0 3 chr1 60688940 60689264 -181975089 + AluSx SINE Alu 1 323 0 1381 137 5 19 chr1 60689376 60689587 -181974766 + AluJb SINE Alu 87 294 -18 376 264 68 80 chr1 60689976 60690139 -181974214 - MIR SINE MIR -71 191 31 2100 97 0 45 chr1 60690194 60690363 -181973990 - AluSx SINE Alu -17 295 145 2394 75 3 0 chr1 60690363 60690655 -181973698 - AluY SINE Alu -18 293 1 2100 97 0 45 chr1 60690655 60690794 -181973559 - AluSx SINE Alu -167 145 1 533 212 147 5 chr1 60690847 60690907 -181973446 + MER112 DNA MER1_type 3 53 -207 285 29 0 0 chr1 60690907 60690941 -181973412 + (TG)n Simple_repeat Simple_repeat 2 35 0 533 212 147 5 chr1 60690941 60691064 -181973289 + MER112 DNA MER1_type 53 212 -48 1612 177 118 6 chr1 60691247 60691603 -181972750 - MSTD LTR MaLR 0 396 1 1846 190 97 0 chr1 60692085 60692528 -181971825 - Charlie4a DNA MER1_type -3 505 20 268 365 25 25 chr1 60692597 60692794 -181971559 + L2 LINE L2 925 1121 -2193 381 261 101 29 chr1 60693105 60693243 -181971110 + L2 LINE L2 3159 3306 -7 26 0 0 0 chr1 60693984 60694010 -181970343 + AT_rich Low_complexity Low_complexity 1 26 0 1731 182 20 7 chr1 60694010 60694312 -181970041 + AluJo SINE Alu 1 306 -6 705 123 8 23 chr1 60694319 60694449 -181969904 - L1MB3 LINE L1 -12 6171 6044 209 241 101 0 chr1 60694664 60694743 -181969610 - L2 LINE L2 -66 3247 3161 2281 82 0 38 chr1 60694792 60695107 -181969246 + AluSq SINE Alu 1 303 -10 237 324 42 0 chr1 60695473 60695544 -181968809 - MIR SINE MIR -161 101 28 243 301 24 36 chr1 60695628 60695711 -181968642 + MIR SINE MIR 2 83 -179 230 200 0 0 chr1 60695727 60695777 -181968576 - HsTC2 DNA Tc2 -2 1896 1847 491 234 39 45 chr1 60695834 60695988 -181968365 + MIR SINE MIR 110 262 0 1439 175 86 14 chr1 60696026 60696306 -181968047 - AluSg SINE Alu 0 300 1 908 109 0 36 chr1 60696557 60696695 -181967658 - FLAM_C SINE Alu 0 133 1 735 240 41 52 chr1 60696794 60696869 -181967484 - MER46C DNA MER2_type -2 336 262 324 0 0 0 chr1 60696869 60696905 -181967448 + (TG)n Simple_repeat Simple_repeat 2 37 0 735 240 41 52 chr1 60696905 60697096 -181967257 - MER46C DNA MER2_type -76 262 73 1385 161 80 15 chr1 60697169 60697443 -181966910 + AluJb SINE Alu 3 294 -18 236 189 0 0 chr1 60697449 60697502 -181966851 - MER46C DNA MER2_type -272 66 14 603 204 0 68 chr1 60697521 60697683 -181966670 + MER113 DNA MER1_type? 230 380 -141 1308 162 61 36 chr1 60697687 60697842 -181966511 + Looper DNA T2_type 8 158 -1400 1664 185 27 14 chr1 60697842 60698134 -181966219 + AluJo SINE Alu 1 296 -16 1308 162 61 36 chr1 60698134 60698552 -181965801 + Looper DNA T2_type 158 669 -889 1416 167 62 3 chr1 60698552 60698858 -181965495 - MER33 DNA MER1_type 0 324 1 * 3934 173 17 46 chr1 60698858 60698909 -181965444 + Looper DNA T2_type 662 713 -845 2189 110 0 7 chr1 60698909 60699210 -181965143 + AluSx SINE Alu 1 299 -13 3934 173 17 46 chr1 60699210 60699607 -181964746 + Looper DNA T2_type 713 1120 -438 2367 107 0 7 chr1 60699607 60699917 -181964436 + AluSx SINE Alu 1 308 -4 3934 173 17 46 chr1 60699917 60700243 -181964110 + Looper DNA T2_type 1120 1408 -150 1764 180 6 19 chr1 60700243 60700559 -181963794 - AluJo SINE Alu 0 312 1 3934 173 17 46 chr1 60700559 60700706 -181963647 + Looper DNA T2_type 1408 1558 0 728 249 266 14 chr1 60700967 60701332 -181963021 + HAL1 LINE L1 17 473 -2034 1010 270 111 20 chr1 60701396 60701855 -181962498 + HAL1 LINE L1 595 1095 -1412 632 131 29 58 chr1 60702385 60702401 -181961952 - FLAM_C SINE Alu -169 133 118 701 58 10 0 chr1 60702401 60702504 -181961849 + (TTATG)n Simple_repeat Simple_repeat 2 105 0 632 131 29 58 chr1 60702504 60702624 -181961729 - FLAM_C SINE Alu -184 118 1 23 0 0 0 chr1 60702985 60703008 -181961345 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 60703078 60703106 -181961247 + AT_rich Low_complexity Low_complexity 1 28 0 707 226 25 0 chr1 60703524 60703683 -181960670 - MER3 DNA MER1_type -45 164 2 376 338 50 23 chr1 60703686 60703905 -181960448 - MIR SINE MIR -36 226 2 2224 113 0 0 chr1 60704211 60704511 -181959842 + AluSx SINE Alu 1 300 -12 2060 123 0 0 chr1 60704559 60704878 -181959475 + AluSx SINE Alu 1 319 0 27 29 0 0 chr1 60704955 60704989 -181959364 + AT_rich Low_complexity Low_complexity 1 34 0 216 294 88 49 chr1 60705094 60705196 -181959157 + MIR SINE MIR 1 106 -156 316 252 0 140 chr1 60705201 60705308 -181959045 - MIR SINE MIR -155 107 16 939 226 35 18 chr1 60705634 60705917 -181958436 - L1MA9 LINE L1 -38 6274 5987 953 127 13 38 chr1 60705977 60706134 -181958219 - FRAM SINE Alu -23 153 1 338 240 220 0 chr1 60710362 60710462 -181953891 - L2 LINE L2 -6 3266 3145 303 252 35 52 chr1 60710477 60710592 -181953761 - MER5A DNA MER1_type -21 168 56 808 126 14 206 chr1 60710634 60710744 -181953609 - MER5A DNA MER1_type -9 180 133 1499 193 11 0 chr1 60710744 60711009 -181953344 - AluJb SINE Alu -44 268 1 808 126 14 206 chr1 60711009 60711121 -181953232 - MER5A DNA MER1_type -56 133 1 394 339 80 21 chr1 60712384 60712623 -181951730 + L1MEd LINE L1 576 828 -5291 507 271 124 24 chr1 60712749 60713166 -181951187 + L1MEd LINE L1 939 1435 -4875 1918 150 14 0 chr1 60713166 60713459 -181950894 - AluJb SINE Alu -15 297 1 507 271 124 24 chr1 60713459 60713638 -181950715 + L1MEd LINE L1 1435 1595 -4715 558 205 45 0 chr1 60713659 60713815 -181950538 + L1MEd LINE L1 2234 2396 -3733 2469 68 0 10 chr1 60713849 60714156 -181950197 - AluY SINE Alu -7 304 1 346 238 115 0 chr1 60714216 60714338 -181950015 + L1ME3 LINE L1 5322 5457 -705 2106 131 25 33 chr1 60714338 60714705 -181949648 + THE1B LTR MaLR 1 364 0 10984 91 10 12 chr1 60714705 60715072 -181949281 + THE1B-int LTR MaLR 1 367 -1213 2097 142 0 3 chr1 60715072 60715375 -181948978 - AluSx SINE Alu -10 302 1 10984 91 10 12 chr1 60715375 60716582 -181947771 + THE1B-int LTR MaLR 367 1580 0 2403 109 19 27 chr1 60716582 60716949 -181947404 + THE1B LTR MaLR 1 364 0 2169 228 85 20 chr1 60716949 60717595 -181946758 + L1ME3 LINE L1 5453 6140 -22 2312 106 0 10 chr1 60717635 60717937 -181946416 + AluSx SINE Alu 1 299 -13 1145 270 59 21 chr1 60717951 60718345 -181946008 + L1MEd LINE L1 2540 2959 -3170 1936 147 44 3 chr1 60718345 60718638 -181945715 + AluSx SINE Alu 1 305 -7 1145 270 59 21 chr1 60718638 60718754 -181945599 + L1MEd LINE L1 2959 3069 -3060 243 362 124 17 chr1 60718778 60718955 -181945398 + L2 LINE L2 3076 3271 -1 681 258 103 48 chr1 60718994 60719187 -181945166 - MER102a DNA MER1_type -1090 327 109 1925 124 11 7 chr1 60719187 60719386 -181944967 + AluJb SINE Alu 11 213 -99 210 37 0 0 chr1 60719386 60719413 -181944940 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 1925 124 11 7 chr1 60719413 60719495 -181944858 + AluJb SINE Alu 213 293 -19 681 258 103 48 chr1 60719495 60719611 -181944742 - MER102a DNA MER1_type -1308 109 1 439 301 129 14 chr1 60720498 60720707 -181943646 - MIR SINE MIR -1 261 29 198 0 0 0 chr1 60720835 60720857 -181943496 + (T)n Simple_repeat Simple_repeat 1 22 0 2381 103 0 0 chr1 60721291 60721601 -181942752 + AluSg SINE Alu 1 310 0 204 97 0 0 chr1 60721945 60721976 -181942377 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1532 260 111 24 chr1 60721994 60722152 -181942201 - L2 LINE L2 -39 3274 3131 2041 127 26 36 chr1 60722152 60722460 -181941893 - AluJb SINE Alu -7 305 1 1532 260 111 24 chr1 60722460 60723099 -181941254 - L2 LINE L2 -182 3131 2396 1346 284 32 26 chr1 60723107 60723603 -181940750 - MLT1J LTR MaLR -7 504 6 476 275 54 7 chr1 60723624 60723773 -181940580 + MIR3 SINE MIR 50 205 -3 21 57 0 0 chr1 60724032 60724067 -181940286 + AT_rich Low_complexity Low_complexity 1 35 0 232 324 59 59 chr1 60724189 60724479 -181939874 - L2 LINE L2 -84 3229 2940 455 255 30 105 chr1 60724529 60724729 -181939624 + MIR SINE MIR 45 229 -33 2143 150 0 3 chr1 60725272 60725585 -181938768 - AluJb SINE Alu 0 312 1 376 132 0 26 chr1 60725586 60725662 -181938691 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1736 189 0 16 chr1 60725664 60725970 -181938383 - AluJo SINE Alu -11 301 1 486 287 133 68 chr1 60726048 60726241 -181938112 + L2 LINE L2 2827 3006 -307 2310 103 3 10 chr1 60726241 60726552 -181937801 - AluSg SINE Alu -1 309 1 486 287 133 68 chr1 60726552 60726815 -181937538 + L2 LINE L2 3006 3313 0 463 286 89 22 chr1 60726946 60727249 -181937104 - L2 LINE L2 -3 3269 2545 320 175 0 0 chr1 60727522 60727579 -181936774 - L1M4 LINE L1 -1351 4795 4739 807 172 26 20 chr1 60727584 60727735 -181936618 - AluJb SINE Alu -24 288 137 2669 203 40 60 chr1 60727736 60728490 -181935863 - L1M4 LINE L1 -1399 4747 4009 209 56 0 28 chr1 60728490 60728526 -181935827 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2669 203 40 60 chr1 60728526 60728586 -181935767 - L1M4 LINE L1 -2137 4009 3949 293 169 0 0 chr1 60729043 60729102 -181935251 - L1MB5 LINE L1 -1 6173 6115 847 151 0 0 chr1 60729103 60729274 -181935079 + FLAM_C SINE Alu 1 171 0 2788 143 54 25 chr1 60729275 60729563 -181934790 - L1MB5 LINE L1 -51 6123 5845 2478 94 0 0 chr1 60729563 60729871 -181934482 - AluSx SINE Alu -4 308 1 2788 143 54 25 chr1 60729871 60730135 -181934218 - L1MB5 LINE L1 -329 5845 5555 948 94 8 8 chr1 60730137 60730265 -181934088 + AluSq/x SINE Alu 4 131 -181 520 135 16 173 chr1 60730265 60730450 -181933903 - L1MB5 LINE L1 -608 5566 5411 869 160 8 0 chr1 60730464 60730595 -181933758 - FAM SINE Alu -22 163 32 2410 161 26 49 chr1 60730595 60730942 -181933411 - L1MB5 LINE L1 -743 5403 5125 1490 168 39 81 chr1 60730942 60731252 -181933101 + AluJb SINE Alu 6 302 -10 2410 161 26 49 chr1 60731252 60731539 -181932814 - L1MB5 LINE L1 -1021 5125 4833 394 286 143 12 chr1 60731554 60731715 -181932638 + MIR SINE MIR 78 259 -3 413 330 118 49 chr1 60731963 60732480 -181931873 - L2 LINE L2 0 3272 2615 1706 183 3 11 chr1 60732480 60732796 -181931557 - AluJo SINE Alu 0 314 1 413 330 118 49 chr1 60732796 60733118 -181931235 - L2 LINE L2 -657 2615 2317 2248 115 6 13 chr1 60733345 60733657 -181930696 + AluSg SINE Alu 1 310 0 299 267 92 53 chr1 60734265 60734396 -181929957 - MIR3 SINE MIR -15 193 58 210 312 64 46 chr1 60734499 60734608 -181929745 + MIR3 SINE MIR 4 114 -94 188 250 36 0 chr1 60735020 60735076 -181929277 - MIR3 SINE MIR -50 158 101 212 290 137 29 chr1 60735214 60735339 -181929014 + MER5A DNA MER1_type 2 128 -50 218 309 18 0 chr1 60735426 60735481 -181928872 + MIR SINE MIR 46 101 -161 21 0 0 0 chr1 60735705 60735726 -181928627 + GC_rich Low_complexity Low_complexity 1 21 0 243 79 0 0 chr1 60735962 60736000 -181928353 + (CGG)n Simple_repeat Simple_repeat 3 40 0 364 264 11 33 chr1 60737756 60737847 -181926506 + MIR3 SINE MIR 88 176 -32 199 224 0 20 chr1 60739102 60739151 -181925202 - MIR SINE MIR -59 149 102 197 284 0 54 chr1 60739527 60739601 -181924752 + MIR SINE MIR 71 140 -68 271 318 91 53 chr1 60740573 60740705 -181923648 - MIR SINE MIR -105 157 21 22 0 0 0 chr1 60742347 60742369 -181921984 + AT_rich Low_complexity Low_complexity 1 22 0 334 258 45 22 chr1 60743183 60743272 -181921081 + MIR3 SINE MIR 112 202 -6 715 275 20 33 chr1 60743404 60743659 -181920694 - MIR SINE MIR -6 256 1 908 237 32 12 chr1 60746577 60746830 -181917523 + MIR SINE MIR 4 261 -1 334 310 205 12 chr1 60746877 60747135 -181917218 + L2 LINE L2 2960 3267 -5 292 259 98 77 chr1 60747902 60748045 -181916308 - MIR3 SINE MIR -25 183 38 * 518 289 119 10 chr1 60748006 60748200 -181916153 + MIR SINE MIR 25 239 -23 180 156 125 16 chr1 60748233 60748297 -181916056 - MIR3 SINE MIR -130 78 8 394 294 24 40 chr1 60748786 60748912 -181915441 - MIR SINE MIR -72 190 67 285 352 19 0 chr1 60749466 60749574 -181914779 - L2 LINE L2 -17 3255 3146 329 151 0 0 chr1 60750342 60750395 -181913958 + FRAM/FAM SINE Alu 15 67 -99 1480 173 8 8 chr1 60750395 60750644 -181913709 + AluJo SINE Alu 50 298 -14 908 177 0 12 chr1 60750708 60750872 -181913481 - MER3 DNA MER1_type -46 163 2 184 208 21 42 chr1 60751130 60751178 -181913175 - L2 LINE L2 -257 3056 3010 621 244 69 40 chr1 60751402 60751632 -181912721 - L1ME4a LINE L1 -1 6120 5879 2095 126 16 10 chr1 60751632 60751942 -181912411 + AluSx SINE Alu 1 312 0 621 244 69 40 chr1 60751942 60751985 -181912368 - L1ME4a LINE L1 -242 5879 5839 2380 106 0 0 chr1 60752117 60752420 -181911933 - AluSx SINE Alu -9 303 1 1949 122 38 3 chr1 60752425 60752712 -181911641 - AluJb SINE Alu -15 297 1 564 274 73 17 chr1 60752911 60753090 -181911263 - L1ME4a LINE L1 -385 5736 5548 654 316 36 0 chr1 60753822 60754015 -181910338 - MIR SINE MIR -6 256 57 46 19 0 0 chr1 60754141 60754194 -181910159 + AT_rich Low_complexity Low_complexity 1 53 0 229 245 0 0 chr1 60754213 60754262 -181910091 - L2 LINE L2 -1 3312 3264 1267 175 5 0 chr1 60754262 60754468 -181909885 - AluJb SINE Alu -19 293 87 4212 148 46 11 chr1 60754482 60755070 -181909283 - L1MA4 LINE L1 -1 6299 5676 2276 124 0 0 chr1 60755070 60755377 -181908976 - AluSx SINE Alu -5 307 1 4212 148 46 11 chr1 60755377 60755552 -181908801 - L1MA4 LINE L1 -624 5676 5509 327 212 20 10 chr1 60756714 60756813 -181907540 - HAL1 LINE L1 -398 2109 2010 591 229 80 23 chr1 60757051 60757226 -181907127 - LTR67 LTR ERVL -43 514 330 286 214 155 0 chr1 60757309 60757393 -181906960 - LTR67 LTR ERVL -369 188 92 591 284 128 23 chr1 60757395 60757652 -181906701 - L2 LINE L2 -17 3296 3013 233 311 14 0 chr1 60757718 60757792 -181906561 - LTR67 LTR ERVL -479 78 4 258 228 252 8 chr1 60757801 60757928 -181906425 - HAL1 LINE L1 -758 1749 1592 904 235 60 0 chr1 60757933 60758150 -181906203 - MIR SINE MIR 0 262 33 899 270 112 45 chr1 60758164 60758850 -181905503 - HAL1 LINE L1 -947 1560 829 393 272 171 31 chr1 60758853 60759081 -181905272 + L2 LINE L2 941 1200 -2114 441 281 219 35 chr1 60759134 60759558 -181904795 + L2 LINE L2 1487 1988 -1326 338 270 80 36 chr1 60759650 60759787 -181904566 + L2 LINE L2 2602 2744 -570 296 302 119 19 chr1 60759860 60760019 -181904334 + L2 LINE L2 2886 3060 -253 1627 178 46 16 chr1 60760056 60760359 -181903994 + AluJb SINE Alu 1 312 0 343 246 152 29 chr1 60760932 60761070 -181903283 - MIR SINE MIR -12 250 96 1328 149 0 41 chr1 60761501 60761722 -181902631 - AluJb SINE Alu -23 289 78 273 128 0 0 chr1 60761722 60761761 -181902592 - AluJo/FLAM SINE Alu -186 116 78 235 196 0 0 chr1 60761754 60761800 -181902553 - Alu SINE Alu -179 123 78 * 315 130 0 0 chr1 60761793 60761839 -181902514 - AluJb SINE Alu -179 123 78 315 130 0 0 chr1 60761832 60761878 -181902475 - AluJb SINE Alu -179 123 78 289 125 0 0 chr1 60761877 60761917 -181902436 - AluJo/FLAM SINE Alu -185 117 78 * 315 130 0 0 chr1 60761910 60761956 -181902397 - AluJb SINE Alu -179 123 78 289 125 0 0 chr1 60761955 60761995 -181902358 - AluJo/FLAM SINE Alu -185 117 78 * 315 130 0 0 chr1 60761988 60762034 -181902319 - AluJb SINE Alu -179 123 78 289 125 0 0 chr1 60762033 60762073 -181902280 - AluJo/FLAM SINE Alu -185 117 78 * 315 130 0 0 chr1 60762066 60762112 -181902241 - AluJb SINE Alu -179 123 78 289 125 0 0 chr1 60762111 60762151 -181902202 - AluJo/FLAM SINE Alu -185 117 78 * 315 130 0 0 chr1 60762144 60762190 -181902163 - AluJb SINE Alu -179 123 78 289 125 0 0 chr1 60762189 60762229 -181902124 - AluJo/FLAM SINE Alu -185 117 78 * 315 130 0 0 chr1 60762222 60762268 -181902085 - AluJb SINE Alu -179 123 78 289 125 0 0 chr1 60762267 60762307 -181902046 - AluJo/FLAM SINE Alu -185 117 78 * 315 130 0 0 chr1 60762300 60762346 -181902007 - AluJb SINE Alu -179 123 78 289 125 0 0 chr1 60762345 60762385 -181901968 - AluJo/FLAM SINE Alu -185 117 78 * 315 130 0 0 chr1 60762378 60762424 -181901929 - AluJb SINE Alu -179 123 78 289 125 0 0 chr1 60762423 60762463 -181901890 - FLAM_A SINE Alu -17 116 77 * 307 170 0 0 chr1 60762456 60762509 -181901844 - AluJb SINE Alu -179 123 71 620 227 167 0 chr1 60763257 60763407 -181900946 + MER5A DNA MER1_type 15 189 0 252 289 44 26 chr1 60763407 60763510 -181900843 - L2 LINE L2 -310 2962 2858 497 347 5 16 chr1 60763658 60763848 -181900505 - MIR3 SINE MIR 0 208 21 397 314 80 0 chr1 60763955 60764092 -181900261 - MIR SINE MIR -107 155 8 231 36 0 0 chr1 60764161 60764189 -181900164 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 525 139 0 0 chr1 60764216 60764302 -181900051 - L1MA6 LINE L1 0 6300 6215 189 220 130 80 chr1 60764384 60764484 -181899869 + MIR3 SINE MIR 84 188 -20 428 267 112 0 chr1 60765127 60765243 -181899110 + MIR SINE MIR 77 205 -57 336 320 10 10 chr1 60766149 60766246 -181898107 + L1MCa LINE L1 1967 2063 -4363 * 431 289 0 0 chr1 60766216 60766306 -181898047 + L1MC4 LINE L1 6894 6983 -1339 * 454 289 27 39 chr1 60766242 60766393 -181897960 - L1MC4 LINE L1 -1339 6983 1953 192 241 93 0 chr1 60766429 60766483 -181897870 + MIR3 SINE MIR 139 197 -11 280 235 200 9 chr1 60766528 60766643 -181897710 - L2 LINE L2 0 3313 3177 331 178 151 0 chr1 60766663 60766736 -181897617 - L2 LINE L2 -101 3212 3129 257 299 66 44 chr1 60767041 60767178 -181897175 + MIR3 SINE MIR 64 203 -5 238 292 46 0 chr1 60767249 60767314 -181897039 - MIR SINE MIR -76 186 119 2274 88 0 10 chr1 60767339 60767645 -181896708 - AluY SINE Alu -6 305 3 882 142 0 0 chr1 60767795 60767922 -181896431 + FLAM_C SINE Alu 1 127 -16 2181 119 0 0 chr1 60767976 60768278 -181896075 - AluSg SINE Alu -8 302 1 199 227 118 55 chr1 60768753 60768863 -181895490 + MER5A DNA MER1_type 25 141 -48 254 274 66 47 chr1 60769261 60769367 -181894986 - MIR SINE MIR -3 259 152 504 276 62 36 chr1 60769380 60769572 -181894781 + MIR SINE MIR 2 198 -64 188 332 168 36 chr1 60770320 60770516 -181893837 + MIR SINE MIR 16 237 -25 235 224 0 0 chr1 60770649 60770698 -181893655 + MIR SINE MIR 101 149 -59 222 150 0 0 chr1 60771055 60771095 -181893258 + (TCCCC)n Simple_repeat Simple_repeat 2 41 0 414 229 76 0 chr1 60771222 60771327 -181893026 + MIR SINE MIR 55 167 -95 2009 150 0 7 chr1 60771986 60772293 -181892060 - AluJo SINE Alu -7 305 1 656 248 13 7 chr1 60772364 60772513 -181891840 + MIR SINE MIR 107 256 -6 265 278 100 22 chr1 60772549 60772639 -181891714 - MIR SINE MIR -67 141 45 503 292 8 0 chr1 60773242 60773372 -181890981 - MIR SINE MIR -8 254 124 2148 138 0 0 chr1 60773625 60773937 -181890416 - AluSx SINE Alu 0 312 1 565 216 101 22 chr1 60774002 60774141 -181890212 + MIR SINE MIR 12 161 -101 195 283 0 38 chr1 60774133 60774186 -181890167 + L2 LINE L2 3210 3260 -12 * 3750 159 21 10 chr1 60774301 60775029 -181889324 + L1MB7 LINE L1 5429 6164 -20 283 330 39 0 chr1 60775578 60775681 -181888672 + MIR SINE MIR 17 123 -139 1572 184 22 22 chr1 60775684 60776010 -181888343 + MLT1A2 LTR MaLR 15 343 -31 1267 143 89 36 chr1 60776010 60776234 -181888119 + MER46A DNA MER2_type 1 236 0 1572 184 22 22 chr1 60776234 60776265 -181888088 + MLT1A2 LTR MaLR 342 372 -2 2203 123 3 0 chr1 60776284 60776593 -181887760 + AluSx SINE Alu 1 310 -2 327 274 137 0 chr1 60776708 60776825 -181887528 + MIR SINE MIR 74 206 -56 844 229 14 33 chr1 60777758 60777968 -181886385 + MIR SINE MIR 51 256 -6 199 269 51 39 chr1 60778322 60778400 -181885953 - L2 LINE L2 -508 2806 2728 185 343 90 0 chr1 60778879 60779013 -181885340 - L2 LINE L2 -299 2973 2828 418 157 0 14 chr1 60780697 60780767 -181883586 - FAM SINE Alu -24 161 93 232 270 99 12 chr1 60780987 60781068 -181883285 - MIR SINE MIR -103 105 21 481 293 92 50 chr1 60781370 60781708 -181882645 + L2 LINE L2 2915 3266 -6 517 179 131 35 chr1 60782352 60782497 -181881856 + MIR SINE MIR 47 205 -57 269 268 98 73 chr1 60783083 60783206 -181881147 + MIR SINE MIR 133 258 -4 221 316 0 0 chr1 60783307 60783364 -181880989 - L2 LINE L2 -539 2775 2719 819 142 0 8 chr1 60784447 60784574 -181879779 - FLAM_C SINE Alu -17 126 1 640 271 84 33 chr1 60784595 60784809 -181879544 + MIR SINE MIR 2 226 -36 340 158 18 0 chr1 60786836 60786893 -181877460 + U7 snRNA snRNA 2 59 -4 257 348 45 27 chr1 60786990 60787214 -181877139 - L2 LINE L2 -96 3176 2949 378 234 0 11 chr1 60788527 60788621 -181875732 + MIR SINE MIR 40 132 -76 377 348 141 16 chr1 60788761 60789158 -181875195 + L2 LINE L2 2782 3242 -30 213 39 0 0 chr1 60789404 60789430 -181874923 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 205 330 71 18 chr1 60789430 60789542 -181874811 - L2 LINE L2 -18 3254 3137 288 294 111 22 chr1 60790483 60790663 -181873690 + L2 LINE L2 2905 3100 -172 197 274 81 0 chr1 60791322 60791384 -181872969 - L2 LINE L2 -1 3271 3205 477 294 16 49 chr1 60791738 60791922 -181872431 - L3 LINE CR1 -3 1574 1397 751 287 72 13 chr1 60792036 60792273 -181872080 - MIR SINE MIR -8 254 4 375 332 68 29 chr1 60792514 60792821 -181871532 + L2 LINE L2 2881 3199 -73 238 341 59 0 chr1 60792830 60792915 -181871438 + MIR3 SINE MIR 116 205 -3 257 269 0 134 chr1 60793247 60793396 -181870957 + L2 LINE L2 3143 3271 -1 180 0 0 0 chr1 60794915 60794935 -181869418 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 384 163 40 32 chr1 60795109 60795218 -181869135 - MIR SINE MIR -67 141 58 261 315 22 0 chr1 60796761 60796853 -181867500 - MIR3 SINE MIR -4 204 111 295 248 218 0 chr1 60797158 60797259 -181867094 + MIR3 SINE MIR 33 155 -53 216 240 0 0 chr1 60797285 60797335 -181867018 + C-rich Low_complexity Low_complexity 1 50 0 338 300 68 8 chr1 60797609 60797795 -181866558 - MIR SINE MIR -8 254 55 210 298 26 70 chr1 60798231 60798345 -181866008 + MIR SINE MIR 39 147 -115 255 305 95 11 chr1 60799839 60799934 -181864419 + MIR SINE MIR 20 122 -86 184 337 42 32 chr1 60800123 60800218 -181864135 - MIR SINE MIR -76 132 37 203 177 210 0 chr1 60800273 60800335 -181864018 + MIR SINE MIR 79 153 -109 298 296 41 0 chr1 60800728 60800826 -181863527 + MIR SINE MIR 46 147 -115 311 207 0 0 chr1 60801128 60801186 -181863167 - MIR SINE MIR -108 154 97 813 238 44 0 chr1 60801205 60801386 -181862967 - MER5A DNA MER1_type 0 189 1 2451 80 0 0 chr1 60801443 60801755 -181862598 - AluSx SINE Alu 0 312 1 202 282 64 51 chr1 60801812 60801890 -181862463 - L2 LINE L2 0 3272 3194 253 316 145 0 chr1 60801960 60802077 -181862276 - L2 LINE L2 0 3272 3139 219 320 82 21 chr1 60802154 60802251 -181862102 - MIR3 SINE MIR -101 107 5 271 308 35 106 chr1 60803031 60803258 -181861095 - L2 LINE L2 -109 3163 2953 194 296 19 0 chr1 60803301 60803355 -181860998 - MIR SINE MIR -65 143 89 23 0 0 0 chr1 60803709 60803732 -181860621 + AT_rich Low_complexity Low_complexity 1 23 0 514 275 230 12 chr1 60803732 60803928 -181860425 + MIR3 SINE MIR 12 249 -13 407 274 242 11 chr1 60803936 60804126 -181860227 - L3 LINE CR1 -43 1534 1301 285 333 161 19 chr1 60804181 60804448 -181859905 - L3 LINE CR1 -429 1148 844 249 333 0 61 chr1 60804666 60804798 -181859555 - L1ME LINE L1 -306 5815 5692 288 311 170 0 chr1 60804798 60804933 -181859420 - L2 LINE L2 -7 3265 3108 244 232 0 0 chr1 60805012 60805068 -181859285 - L3 LINE CR1 -733 844 789 238 325 118 30 chr1 60805790 60805959 -181858394 - L2 LINE L2 0 3272 3089 361 274 94 0 chr1 60805995 60806101 -181858252 + L2 LINE L2 3155 3270 -2 215 288 30 0 chr1 60806173 60806239 -181858114 + CT-rich Low_complexity Low_complexity 5 72 0 192 31 0 31 chr1 60806579 60806611 -181857742 + MIR SINE MIR 108 138 -124 1601 163 100 51 chr1 60806767 60806984 -181857369 - MER7A DNA MER2_type -2693 345 107 2084 130 3 0 chr1 60806984 60807277 -181857076 + AluSx SINE Alu 1 294 -18 1601 163 100 51 chr1 60807277 60807390 -181856963 - MER7A DNA MER2_type -2931 107 1 342 181 43 43 chr1 60807419 60807513 -181856840 + MER20 DNA MER1_type 124 217 -2 225 374 16 0 chr1 60807605 60807728 -181856625 - L2 LINE L2 -448 2866 2742 861 215 183 32 chr1 60807733 60808045 -181856308 + MLT1A1 LTR MaLR 1 359 -6 233 295 119 7 chr1 60808136 60808289 -181856064 + MIR3 SINE MIR 15 175 -75 204 356 40 0 chr1 60809047 60809148 -181855205 - L2 LINE L2 -439 2875 2771 229 231 109 95 chr1 60809298 60809445 -181854908 + MIR SINE MIR 100 248 -14 629 284 20 44 chr1 60809473 60809677 -181854676 + MIR SINE MIR 1 199 -63 1567 227 164 114 chr1 60809677 60809996 -181854357 + L2 LINE L2 1808 2110 -1203 1020 129 0 0 chr1 60809996 60810143 -181854210 - FRAM SINE Alu -30 146 1 1567 227 164 114 chr1 60810143 60811109 -181853244 + L2 LINE L2 2110 3308 -5 228 306 0 0 chr1 60812189 60812251 -181852102 + MIR SINE MIR 181 242 -20 191 350 10 48 chr1 60812312 60812415 -181851938 - L2 LINE L2 -1 3271 3173 688 273 100 18 chr1 60812621 60812841 -181851512 + MIR SINE MIR 25 262 0 207 200 0 0 chr1 60813155 60813195 -181851158 + (CAT)n Simple_repeat Simple_repeat 3 42 0 230 213 160 0 chr1 60813561 60813636 -181850717 - L3 LINE CR1 -68 1509 1423 296 301 29 10 chr1 60814321 60814424 -181849929 + L2 LINE L2 2980 3084 -188 194 283 0 0 chr1 60815257 60815303 -181849050 + L2 LINE L2 3250 3295 -18 376 266 43 7 chr1 60815564 60815703 -181848650 - MIR3 SINE MIR -6 202 59 594 275 72 12 chr1 60815747 60815959 -181848394 - MIR SINE MIR -7 255 32 634 273 93 6 chr1 60816051 60816234 -181848119 + MIR3 SINE MIR 7 205 -3 321 289 21 21 chr1 60816220 60816317 -181848036 - L3 LINE CR1 -89 1488 1392 * 220 196 59 0 chr1 60817042 60817093 -181847260 + L2 LINE L2 3030 3083 -189 421 332 162 16 chr1 60817233 60817616 -181846737 - L2 LINE L2 -1 3271 2833 1012 232 111 42 chr1 60817773 60818269 -181846084 - MLT1H1 LTR MaLR -18 537 8 378 274 94 7 chr1 60819636 60819787 -181844566 + MIR SINE MIR 30 191 -65 281 297 99 10 chr1 60819875 60819976 -181844377 - L2 LINE L2 -21 3251 3142 628 195 145 25 chr1 60820080 60820239 -181844114 - MIR SINE MIR -19 243 66 293 278 83 0 chr1 60820337 60820409 -181843944 - MER5A DNA MER1_type 0 189 112 218 218 0 55 chr1 60820479 60820534 -181843819 + MIR SINE MIR 97 148 -114 1133 302 205 7 chr1 60820582 60821288 -181843065 + L2 LINE L2 1552 2397 -917 449 221 12 0 chr1 60821385 60821471 -181842882 + L2 LINE L2 3218 3304 -9 307 311 82 24 chr1 60822665 60822816 -181841537 - MIR SINE MIR -58 150 37 374 256 122 51 chr1 60822983 60823139 -181841214 - L2 LINE L2 0 3272 3106 205 306 259 0 chr1 60823411 60823519 -181840834 - MIR SINE MIR -8 254 119 201 222 22 67 chr1 60823511 60823601 -181840752 - MIR3 SINE MIR -121 87 2 * 2065 144 7 3 chr1 60823753 60824052 -181840301 - AluJo SINE Alu -12 300 1 22 0 0 0 chr1 60824539 60824561 -181839792 + AT_rich Low_complexity Low_complexity 1 22 0 2257 116 0 0 chr1 60825037 60825338 -181839015 - AluSx SINE Alu -11 301 1 1559 119 24 8 chr1 60825655 60825908 -181838445 - Tigger2 DNA MER2_type 0 2718 2462 4189 126 60 3 chr1 60825971 60826675 -181837678 - Tigger2 DNA MER2_type -1974 744 1 2707 235 80 64 chr1 60826676 60827447 -181836906 - L1ME3A LINE L1 -30 6140 5383 2083 140 3 10 chr1 60827447 60827754 -181836599 - AluJb SINE Alu -5 307 3 2707 235 80 64 chr1 60827754 60828622 -181835731 - L1ME3A LINE L1 -787 5383 4475 749 49 6 68 chr1 60828630 60828792 -181835561 + (TTCC)n Simple_repeat Simple_repeat 1 152 0 2110 158 0 0 chr1 60828814 60829118 -181835235 - AluSx SINE Alu -8 304 1 277 269 114 24 chr1 60829118 60829408 -181834945 - L1ME3A LINE L1 -1676 4470 4155 22 56 0 0 chr1 60829456 60829492 -181834861 + AT_rich Low_complexity Low_complexity 1 36 0 292 319 28 50 chr1 60829613 60829754 -181834599 + L2 LINE L2 3170 3307 -6 396 273 128 16 chr1 60829806 60829993 -181834360 + MIR SINE MIR 23 230 -32 1010 312 41 28 chr1 60830140 60830576 -181833777 - L2 LINE L2 -2 3311 2870 522 279 50 19 chr1 60830582 60830743 -181833610 - L2 LINE L2 -1 3312 3147 345 313 61 61 chr1 60830736 60830966 -181833387 + L2 LINE L2 2664 2893 -421 * 522 227 41 78 chr1 60831035 60831277 -181833076 + L2 LINE L2 3075 3307 -6 347 221 13 0 chr1 60831957 60832034 -181832319 - MIR SINE MIR -118 144 67 422 285 24 8 chr1 60832112 60832235 -181832118 - MIR SINE MIR -64 144 20 549 244 268 30 chr1 60832703 60833039 -181831314 - L2 LINE L2 -17 3255 2840 229 298 0 0 chr1 60833044 60833101 -181831252 - L2 LINE L2 -224 3048 2992 420 292 33 8 chr1 60834059 60834179 -181830174 - MIR SINE MIR -110 152 30 559 152 61 0 chr1 60834316 60834415 -181829938 - MIR SINE MIR -71 191 87 486 269 170 8 chr1 60834854 60835067 -181829286 + MIR SINE MIR 2 250 -12 190 172 78 31 chr1 60835140 60835204 -181829149 - MIR3 SINE MIR -33 175 109 204 309 128 13 chr1 60835587 60835736 -181828617 - MIR SINE MIR -1 261 96 629 263 69 6 chr1 60836459 60836634 -181827719 - MIR SINE MIR -75 187 2 210 312 112 28 chr1 60838225 60838440 -181825913 + L2 LINE L2 2882 3114 -158 2400 293 69 29 chr1 60839025 60840418 -181823935 - L1ME3A LINE L1 -1977 4169 2722 528 218 15 94 chr1 60840443 60840645 -181823708 + L2 LINE L2 1571 1756 -1558 1783 271 182 18 chr1 60841011 60841798 -181822555 + L2 LINE L2 1788 2703 -611 588 206 161 0 chr1 60841798 60841978 -181822375 + MER20 DNA MER1_type 2 210 -9 329 214 71 30 chr1 60842154 60842322 -181822031 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 206 250 74 9 chr1 60842336 60842444 -181821909 + (CTCA)n Simple_repeat Simple_repeat 4 118 0 242 232 93 13 chr1 60842623 60842774 -181821579 + (CTCA)n Simple_repeat Simple_repeat 4 166 0 277 183 95 47 chr1 60842920 60843089 -181821264 + (CTCA)n Simple_repeat Simple_repeat 4 180 0 420 229 72 15 chr1 60843258 60843597 -181820756 + (CTCA)n Simple_repeat Simple_repeat 1 358 0 1553 237 73 40 chr1 60843688 60844165 -181820188 + L2 LINE L2 2819 3311 -2 533 340 72 27 chr1 60844270 60844644 -181819709 + L1ME4a LINE L1 4907 5297 -849 1441 282 61 40 chr1 60844645 60844845 -181819508 + L1ME4a LINE L1 5317 5511 -610 2369 98 7 3 chr1 60844845 60845151 -181819202 + AluSx SINE Alu 1 307 -5 1441 282 61 40 chr1 60845151 60845670 -181818683 + L1ME4a LINE L1 5511 6051 -70 218 261 85 55 chr1 60845793 60845958 -181818395 - L2 LINE L2 -68 3245 3076 353 254 96 28 chr1 60846325 60846502 -181817851 - L2 LINE L2 -213 3059 2871 243 291 12 12 chr1 60846511 60846597 -181817756 + (TG)n Simple_repeat Simple_repeat 1 86 0 266 261 87 11 chr1 60846624 60846716 -181817637 - MER5B DNA MER1_type -79 99 1 194 305 76 0 chr1 60847003 60847108 -181817245 + MIR SINE MIR 86 198 -64 342 210 176 34 chr1 60847730 60847849 -181816504 + MIR SINE MIR 126 261 -1 383 326 155 6 chr1 60848929 60849110 -181815243 - L2 LINE L2 0 3313 3106 200 204 0 23 chr1 60849880 60849924 -181814429 + MIR SINE MIR 108 150 -112 199 305 84 52 chr1 60850301 60850455 -181813898 + L2 LINE L2 2899 3057 -215 867 168 116 25 chr1 60850662 60850923 -181813430 - L1ME LINE L1 -735 5431 5154 1188 127 0 18 chr1 60850923 60851089 -181813264 + FRAM SINE Alu 1 160 -16 4034 225 66 29 chr1 60851089 60852456 -181811897 - L1ME LINE L1 -980 5166 3750 1201 214 146 42 chr1 60852738 60853164 -181811189 - MLT1D LTR MaLR -8 497 28 2461 84 3 3 chr1 60853180 60853488 -181810865 - AluSx SINE Alu -2 310 3 1803 98 106 4 chr1 60853552 60853816 -181810537 + AluSc SINE Alu 1 291 -18 21 0 0 0 chr1 60853921 60853942 -181810411 + AT_rich Low_complexity Low_complexity 1 21 0 809 266 23 18 chr1 60854406 60854624 -181809729 - MIR SINE MIR -28 234 16 322 288 91 23 chr1 60854730 60854862 -181809491 - MIR3 SINE MIR -52 156 16 434 257 108 20 chr1 60855713 60855861 -181808492 + MIR3 SINE MIR 34 194 -14 474 244 121 25 chr1 60855972 60856173 -181808180 + MIR SINE MIR 13 233 -29 185 271 86 0 chr1 60856341 60856411 -181807942 + L2 LINE L2 3148 3223 -49 345 293 53 40 chr1 60856633 60856783 -181807570 - MIR3 SINE MIR -39 169 18 183 302 66 47 chr1 60857679 60857785 -181806568 + MIR3 SINE MIR 9 116 -92 1324 250 93 24 chr1 60857824 60858498 -181805855 - MER20B DNA MER1_type -32 751 1 2115 125 3 3 chr1 60859588 60859919 -181804434 + AluSx SINE Alu 1 331 0 34 79 0 0 chr1 60860602 60860678 -181803675 + AT_rich Low_complexity Low_complexity 1 76 0 192 255 0 0 chr1 60860705 60860807 -181803546 + (TG)n Simple_repeat Simple_repeat 1 102 0 276 253 8 95 chr1 60860813 60860939 -181803414 - L1ME1 LINE L1 -54 6112 6028 944 266 175 35 chr1 60860982 60861565 -181802788 + L2 LINE L2 2637 3313 0 325 274 0 9 chr1 60862088 60862201 -181802152 - L1ME1 LINE L1 -298 5823 5712 315 339 43 0 chr1 60862202 60862435 -181801918 + L1ME4a LINE L1 5598 5840 -281 331 294 22 121 chr1 60862479 60862531 -181801822 + L1ME LINE L1 208 264 -5941 2260 95 0 0 chr1 60862531 60862815 -181801538 + AluSx SINE Alu 14 297 -15 331 294 22 121 chr1 60862815 60863085 -181801268 + L1ME LINE L1 264 498 -5707 2416 81 0 3 chr1 60863096 60863391 -181800962 + AluY SINE Alu 1 294 -17 1739 198 7 0 chr1 60863504 60863812 -181800541 + AluJo SINE Alu 1 310 -2 885 277 139 59 chr1 60864108 60864247 -181800106 + L1ME LINE L1 786 913 -5483 1851 179 0 17 chr1 60864247 60864548 -181799805 + AluJb SINE Alu 1 296 -16 885 277 139 59 chr1 60864548 60865577 -181798776 + L1ME LINE L1 913 1859 -4537 1922 143 49 54 chr1 60865577 60865927 -181798426 + MER7A DNA MER2_type 1 346 0 885 277 139 59 chr1 60865927 60866068 -181798285 + L1ME LINE L1 1859 1987 -4409 2417 93 10 0 chr1 60866068 60866372 -181797981 + AluSg SINE Alu 1 305 -5 885 277 139 59 chr1 60866372 60866475 -181797878 + L1ME LINE L1 1987 2315 -4081 318 245 88 82 chr1 60866749 60866896 -181797457 - MLT1K LTR MaLR -318 270 123 642 233 210 23 chr1 60866907 60867126 -181797227 - MIR SINE MIR 0 262 3 1709 184 2 97 chr1 60867203 60867382 -181796971 + MLT1A2 LTR MaLR 1 121 -253 1864 142 10 23 chr1 60867382 60867685 -181796668 + AluJo SINE Alu 9 307 -5 1709 184 2 97 chr1 60867685 60867918 -181796435 + MLT1A2 LTR MaLR 121 374 0 275 252 361 2 chr1 60867995 60868161 -181796192 + MIR SINE MIR 38 261 -1 929 190 6 0 chr1 60868200 60868374 -181795979 + FRAM SINE Alu 1 171 -5 361 306 77 35 chr1 60868402 60868572 -181795781 + L1ME4a LINE L1 5944 6120 -1 654 245 39 49 chr1 60869457 60869661 -181794692 - MIR SINE MIR -14 248 47 267 315 74 0 chr1 60869858 60869966 -181794387 + MIR3 SINE MIR 77 192 -16 234 275 174 9 chr1 60870424 60870533 -181793820 - MIR SINE MIR -12 250 124 360 238 119 0 chr1 60870586 60870670 -181793683 + MER58A DNA MER1_type 1 94 -13 1149 102 0 29 chr1 60870675 60871101 -181793252 + (C)n Simple_repeat Simple_repeat 1 597 0 720 196 0 0 chr1 60871102 60871281 -181793072 + C-rich Low_complexity Low_complexity 1 179 0 200 289 24 12 chr1 60871284 60871367 -181792986 + CT-rich Low_complexity Low_complexity 3 86 0 * 378 333 0 32 chr1 60871322 60871508 -181792845 + C-rich Low_complexity Low_complexity 1 180 0 207 243 0 0 chr1 60871615 60871652 -181792701 + (CA)n Simple_repeat Simple_repeat 2 38 0 570 184 10 0 chr1 60871655 60871758 -181792595 + MER58A DNA MER1_type 116 219 -5 260 156 0 0 chr1 60871791 60871836 -181792517 + MIR SINE MIR 77 121 -87 329 262 85 50 chr1 60872395 60872536 -181791817 - MIR SINE MIR 0 262 117 380 271 139 0 chr1 60872577 60872706 -181791647 + MIR3 SINE MIR 53 199 -9 253 354 61 7 chr1 60873148 60873352 -181791001 + MIR SINE MIR 21 235 -27 343 306 52 8 chr1 60873501 60873635 -181790718 + MIR SINE MIR 49 188 -74 220 371 43 29 chr1 60873751 60873892 -181790461 + MIR SINE MIR 2 143 -65 471 306 14 7 chr1 60874792 60874939 -181789414 + MIR SINE MIR 5 152 -110 247 184 20 0 chr1 60875504 60875553 -181788800 - MIR SINE MIR -61 147 98 264 250 114 23 chr1 60875933 60876021 -181788332 + L2 LINE L2 3154 3249 -23 210 280 65 11 chr1 60876032 60876125 -181788228 + MIR SINE MIR 98 195 -67 2654 108 64 15 chr1 60876976 60877384 -181786969 - MSTC LTR MaLR 0 428 1 448 305 46 26 chr1 60877547 60877698 -181786655 - L2 LINE L2 -1 3312 3159 1865 197 47 21 chr1 60877793 60878008 -181786345 - MLT1B LTR MaLR 0 390 159 1943 119 28 0 chr1 60878008 60878294 -181786059 - AluJb SINE Alu -18 294 1 1865 197 47 21 chr1 60878294 60878458 -181785895 - MLT1B LTR MaLR -231 159 1 1302 57 39 0 chr1 60879168 60879405 -181784948 - AluY SINE Alu -12 299 86 280 241 16 11 chr1 60880012 60880107 -181784246 - MIR SINE MIR -61 147 97 273 305 29 9 chr1 60880477 60880582 -181783771 - MIR SINE MIR -59 149 43 1514 160 4 12 chr1 60881062 60881318 -181783035 - AluJo SINE Alu -58 254 1 204 250 0 36 chr1 60881319 60881375 -181782978 + CT-rich Low_complexity Low_complexity 4 57 0 246 280 0 0 chr1 60883077 60883127 -181781226 + (CACG)n Simple_repeat Simple_repeat 1 50 0 243 255 9 66 chr1 60884245 60884351 -181780002 - MIR3 SINE MIR 0 208 109 647 242 46 3 chr1 60884800 60884982 -181779371 - MIR SINE MIR 0 262 69 237 267 77 16 chr1 60885032 60885131 -181779222 - MIR SINE MIR -102 106 2 612 270 16 21 chr1 60886209 60886398 -181777955 + MIR SINE MIR 13 200 -62 1091 138 0 0 chr1 60887282 60887441 -181776912 + FRAM SINE Alu 1 157 -19 259 257 30 40 chr1 60887444 60887545 -181776808 - MIR SINE MIR -84 124 25 190 152 0 0 chr1 60887648 60887681 -181776672 - MIR SINE MIR -109 153 121 223 194 97 48 chr1 60888202 60888264 -181776089 - L2 LINE L2 -15 3257 3193 402 276 115 42 chr1 60888424 60888641 -181775712 - MIR SINE MIR -15 247 15 363 265 86 0 chr1 60888714 60888831 -181775522 - L2 LINE L2 -4 3268 3142 199 162 27 0 chr1 60889259 60889296 -181775057 - MIR SINE MIR -61 147 110 348 276 86 0 chr1 60889412 60889528 -181774825 + L2 LINE L2 2910 3035 -237 401 281 129 14 chr1 60889841 60889980 -181774373 + MIR SINE MIR 38 192 -70 364 250 67 10 chr1 60890123 60890227 -181774126 + MIR SINE MIR 52 150 -58 419 286 76 30 chr1 60890513 60890679 -181773674 + MIR3 SINE MIR 10 182 -61 274 231 28 65 chr1 60890962 60891070 -181773283 + C-rich Low_complexity Low_complexity 3 106 0 487 291 137 11 chr1 60891122 60891304 -181773049 + MIR SINE MIR 43 247 -15 231 250 26 66 chr1 60891746 60891822 -181772531 + MIR3 SINE MIR 117 189 -19 235 386 54 7 chr1 60892065 60892381 -181771972 - L2 LINE L2 -222 3050 2718 314 276 138 0 chr1 60893743 60893859 -181770494 - MIR3 SINE MIR -68 140 9 240 192 13 77 chr1 60894006 60894084 -181770269 - MIR SINE MIR -55 153 81 566 283 54 11 chr1 60894452 60894636 -181769717 + MIR3 SINE MIR 1 192 -16 765 297 174 10 chr1 60894719 60895110 -181769243 + L2 LINE L2 2815 3269 -3 274 308 75 0 chr1 60895431 60895538 -181768815 - MIR3 SINE MIR -11 197 83 292 95 0 0 chr1 60895881 60895923 -181768430 - MIR SINE MIR -63 145 104 977 173 100 5 chr1 60897361 60897581 -181766772 + ORSL DNA AcHobo 33 273 -2 234 235 0 0 chr1 60897641 60897692 -181766661 + MIR3 SINE MIR 104 154 -54 440 198 33 0 chr1 60898255 60898346 -181766007 - MIR SINE MIR -88 174 81 263 196 0 0 chr1 60898698 60898744 -181765609 - LTR67 LTR ERVL -2 555 510 221 310 0 0 chr1 60899791 60899849 -181764504 + (TG)n Simple_repeat Simple_repeat 1 58 0 441 252 172 0 chr1 60900092 60900243 -181764110 - MIR SINE MIR -29 233 57 322 279 159 96 chr1 60900819 60901184 -181763169 - L2 LINE L2 0 3272 2885 340 159 0 17 chr1 60901963 60902036 -181762317 + MIR SINE MIR 73 143 -65 269 269 39 0 chr1 60902166 60902244 -181762109 - L2 LINE L2 -1 3312 3232 263 349 12 6 chr1 60902877 60903043 -181761310 + (TG)n Simple_repeat Simple_repeat 2 168 0 248 350 112 0 chr1 60903226 60903369 -181760984 + L3 LINE CR1 1323 1481 -96 223 299 128 26 chr1 60903579 60903696 -181760657 - MIR SINE MIR -67 141 51 282 310 136 33 chr1 60904174 60904387 -181759966 - MIR SINE MIR 0 262 28 1813 243 111 59 chr1 60904569 60904676 -181759677 - L1ME3A LINE L1 -208 5945 5845 2356 61 0 7 chr1 60904676 60904971 -181759382 + AluY SINE Alu 1 293 -18 1813 243 111 59 chr1 60904971 60906132 -181758221 - L1ME3A LINE L1 -308 5845 4542 1256 214 16 47 chr1 60906132 60906454 -181757899 + AluJo SINE Alu 1 312 0 1813 243 111 59 chr1 60906454 60907059 -181757294 - L1ME3A LINE L1 -1611 4542 3970 3796 128 21 0 chr1 60907075 60907637 -181756716 - L1MC1 LINE L1 -5 6328 5755 2012 156 153 3 chr1 60907637 60908009 -181756344 - MSTA LTR MaLR 0 428 1 9990 133 18 35 chr1 60908009 60909614 -181754739 - MSTA-int LTR MaLR 0 1580 3 1771 137 146 12 chr1 60909616 60909952 -181754401 - MSTA LTR MaLR 0 428 48 1382 271 113 35 chr1 60909952 60912092 -181752261 - L1M4 LINE L1 -1643 4503 2110 355 311 95 73 chr1 60912092 60913412 -181750941 - L1ME3A LINE L1 -4178 2132 638 247 294 43 22 chr1 60913585 60913677 -181750676 + MIR SINE MIR 118 211 -51 241 339 92 0 chr1 60913719 60913828 -181750525 - MIR SINE MIR -41 221 103 222 298 71 24 chr1 60914288 60914372 -181749981 - L3 LINE CR1 -67 1510 1423 202 341 181 7 chr1 60914534 60914672 -181749681 + MIR SINE MIR 29 190 -72 404 219 49 161 chr1 60915302 60915526 -181748827 + MIR SINE MIR 44 242 -20 187 306 97 0 chr1 60915835 60915907 -181748446 + L2 LINE L2 3226 3304 -9 181 425 21 0 chr1 60916020 60916114 -181748239 + L3 LINE CR1 1306 1401 -176 431 277 115 0 chr1 60916491 60916621 -181747732 - L2 LINE L2 -195 3077 2933 372 306 0 6 chr1 60916629 60916789 -181747564 + (TG)n Simple_repeat Simple_repeat 2 160 0 294 201 86 101 chr1 60917816 60917955 -181746398 - L2 LINE L2 0 3272 3136 606 284 57 16 chr1 60919168 60919362 -181744991 + MIR SINE MIR 31 232 -30 378 340 93 0 chr1 60919991 60920153 -181744200 - MIR3 SINE MIR -20 188 12 219 139 0 0 chr1 60920521 60920557 -181743796 + (TCCG)n Simple_repeat Simple_repeat 2 37 0 208 340 136 25 chr1 60920703 60920865 -181743488 - L2 LINE L2 -40 3273 3094 366 313 28 21 chr1 60921004 60921148 -181743205 + MIR SINE MIR 111 255 -7 337 295 21 0 chr1 60921654 60921749 -181742604 - L2 LINE L2 0 3313 3217 218 288 0 0 chr1 60922021 60922080 -181742273 - MIR SINE MIR -37 225 167 409 88 35 0 chr1 60922085 60922142 -181742211 + FRAM/FAM SINE Alu 30 88 -88 180 0 0 0 chr1 60922349 60922369 -181741984 + (TGG)n Simple_repeat Simple_repeat 1 20 0 1979 106 35 0 chr1 60922370 60922654 -181741699 - AluSx SINE Alu -1 311 18 240 35 0 0 chr1 60923355 60923384 -181740969 + (T)n Simple_repeat Simple_repeat 1 29 0 229 313 16 0 chr1 60923699 60923763 -181740590 - MER91A DNA MER1_type -130 66 2 563 338 54 36 chr1 60923764 60924080 -181740273 - L3 LINE CR1 -34 1543 1149 336 48 0 0 chr1 60924080 60924122 -181740231 + (CA)n Simple_repeat Simple_repeat 2 43 0 563 338 54 36 chr1 60924122 60924287 -181740066 - L3 LINE CR1 -428 1149 988 208 270 244 60 chr1 60925423 60925742 -181738611 - L2 LINE L2 0 3272 2895 200 229 21 0 chr1 60928307 60928355 -181735998 + L3 LINE CR1 1429 1477 -100 247 236 79 56 chr1 60928551 60928640 -181735713 + MIR SINE MIR 80 170 -92 244 361 46 19 chr1 60928805 60928913 -181735440 - MIR SINE MIR -133 129 19 235 282 191 0 chr1 60930369 60930500 -181733853 + L2 LINE L2 2905 3060 -212 238 351 18 18 chr1 60931032 60931143 -181733210 + MIR3 SINE MIR 13 123 -85 186 355 37 56 chr1 60931583 60931690 -181732663 + L3 LINE CR1 1396 1500 -77 194 245 19 19 chr1 60931943 60931996 -181732357 + L2 LINE L2 3215 3267 -5 188 360 34 0 chr1 60932201 60932290 -181732063 - MIR SINE MIR -82 180 89 284 200 33 0 chr1 60932853 60932913 -181731440 + L2 LINE L2 3210 3271 -1 190 365 74 14 chr1 60933766 60933914 -181730439 - MIR SINE MIR -55 207 51 183 267 133 38 chr1 60935087 60935192 -181729161 + L2 LINE L2 2855 2969 -303 188 200 18 0 chr1 60935841 60935896 -181728457 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 489 258 30 36 chr1 60936084 60936118 -181728235 - MIR SINE MIR -84 178 145 1577 181 3 20 chr1 60936118 60936410 -181727943 - AluJo SINE Alu -14 298 12 489 258 30 36 chr1 60936410 60936542 -181727811 - MIR SINE MIR -117 145 13 196 313 24 0 chr1 60937057 60937140 -181727213 + MIR SINE MIR 61 145 -63 331 320 33 29 chr1 60937490 60937666 -181726687 - MIR SINE MIR -69 139 11 280 220 23 114 chr1 60937807 60937939 -181726414 + LTR16B LTR ERVL 107 226 -238 348 150 17 0 chr1 60938047 60938107 -181726246 + LTR16B LTR ERVL 402 462 -2 251 200 18 0 chr1 60938132 60938187 -181726166 - MIR SINE MIR -118 144 89 413 284 147 27 chr1 60938749 60939041 -181725312 + L2 LINE L2 2892 3218 -54 218 271 17 0 chr1 60939197 60939256 -181725097 - MIR SINE MIR -63 145 86 214 339 89 18 chr1 60939855 60939967 -181724386 - L3 LINE CR1 -3 1574 1455 249 320 41 16 chr1 60940053 60940175 -181724178 - MIR3 SINE MIR -41 167 43 221 309 171 0 chr1 60940219 60940342 -181724011 - MIR SINE MIR -3 259 116 311 287 69 10 chr1 60940600 60940769 -181723584 - MIR SINE MIR -4 258 15 190 146 24 0 chr1 60940809 60940850 -181723503 - L2 LINE L2 -22 3250 3209 181 297 174 7 chr1 60941616 60941754 -181722599 + MIR SINE MIR 32 192 -70 456 309 48 6 chr1 60942171 60942336 -181722017 + MIR SINE MIR 31 202 -60 551 263 45 94 chr1 60942467 60942798 -181721555 + L2 LINE L2 2951 3265 -7 584 291 57 17 chr1 60942873 60943048 -181721305 - MIR3 SINE MIR -6 202 21 327 311 39 0 chr1 60943633 60943736 -181720617 + L1ME4a LINE L1 6003 6109 -12 182 237 0 0 chr1 60943900 60943938 -181720415 + MIR3 SINE MIR 157 194 -14 4374 175 22 4 chr1 60944499 60945436 -181718917 - L1MB8 LINE L1 0 6178 5227 648 242 45 50 chr1 60945461 60945659 -181718694 - MIR SINE MIR 0 262 66 2315 82 16 0 chr1 60946582 60946887 -181717466 - AluSx SINE Alu -2 310 1 216 162 0 0 chr1 60946911 60946948 -181717405 - MIR SINE MIR -16 246 210 185 264 57 0 chr1 60947038 60947091 -181717262 + MIR SINE MIR 127 182 -80 244 308 77 46 chr1 60948619 60948749 -181715604 - MIR SINE MIR -65 197 64 246 409 45 0 chr1 60948942 60949052 -181715301 - L3 LINE CR1 -13 1564 1450 187 169 0 51 chr1 60949100 60949159 -181715194 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 867 330 72 42 chr1 60949160 60949682 -181714671 - L2 LINE L2 -7 3306 2779 304 335 58 35 chr1 60949917 60950090 -181714263 - MIR SINE MIR -56 206 30 257 329 13 0 chr1 60950215 60950294 -181714059 - MIR SINE MIR -82 126 47 1044 98 22 71 chr1 60950987 60951017 -181713336 + L1MA2 LINE L1 6130 6160 -144 2111 89 0 0 chr1 60951017 60951299 -181713054 + AluY SINE Alu 30 311 0 1044 98 22 71 chr1 60951299 60951452 -181712901 + L1MA2 LINE L1 6160 6304 0 488 252 10 28 chr1 60951468 60952045 -181712308 + (TG)n Simple_repeat Simple_repeat 1 566 0 460 266 0 43 chr1 60952124 60952312 -181712041 + (TG)n Simple_repeat Simple_repeat 1 180 0 253 242 0 31 chr1 60952333 60952494 -181711859 + (TG)n Simple_repeat Simple_repeat 1 156 0 367 319 0 32 chr1 60952509 60952694 -181711659 + (TG)n Simple_repeat Simple_repeat 2 180 0 201 159 0 0 chr1 60952816 60952860 -181711493 + (TG)n Simple_repeat Simple_repeat 2 45 0 204 254 199 55 chr1 60953537 60953733 -181710620 + MIR3 SINE MIR 5 253 -9 308 307 186 0 chr1 60954422 60954562 -181709791 - MIR SINE MIR -11 251 86 599 265 55 30 chr1 60955411 60955611 -181708742 + MIR SINE MIR 10 214 -48 315 325 124 39 chr1 60956103 60956537 -181707816 - L2 LINE L2 -424 2890 2420 198 286 0 18 chr1 60956671 60956727 -181707626 + L2 LINE L2 3213 3267 -5 264 354 117 16 chr1 60956942 60957199 -181707154 + L2 LINE L2 2818 3100 -172 251 312 100 41 chr1 60958082 60958252 -181706101 + MIR SINE MIR 82 261 -1 221 387 87 7 chr1 60958881 60959031 -181705322 - L2 LINE L2 -213 3059 2898 192 332 172 37 chr1 60959767 60960011 -181704342 + L2 LINE L2 2564 2840 -474 384 297 101 0 chr1 60960963 60961101 -181703252 + MIR SINE MIR 28 179 -83 242 335 103 28 chr1 60961596 60961778 -181702575 - MIR SINE MIR -61 201 9 498 184 51 63 chr1 60962430 60962588 -181701765 - MER20 DNA MER1_type -63 156 1 280 354 37 24 chr1 60962951 60963115 -181701238 - MIR SINE MIR -51 211 46 193 293 50 40 chr1 60963263 60963362 -181700991 - MIR3 SINE MIR -20 188 89 260 329 13 0 chr1 60963388 60963467 -181700886 - MIR3 SINE MIR -20 188 109 387 285 119 7 chr1 60963576 60963727 -181700626 - MIR SINE MIR -74 188 21 211 287 199 0 chr1 60964926 60965062 -181699291 + MIR SINE MIR 80 242 -20 341 85 64 11 chr1 60965466 60965560 -181698793 + (TG)n Simple_repeat Simple_repeat 1 99 0 284 342 18 18 chr1 61166406 61166520 -181497833 + L2 LINE L2 3123 3236 -36 619 284 134 35 chr1 61166536 61166985 -181497368 - L2 LINE L2 -18 3295 2892 2595 106 6 0 chr1 61166985 61167335 -181497018 - THE1A LTR MaLR -3 352 1 12153 92 5 2 chr1 61167335 61168910 -181495443 - THE1A-int LTR MaLR 0 1580 1 2808 82 3 0 chr1 61168910 61169264 -181495089 - THE1A LTR MaLR 0 355 1 619 284 134 35 chr1 61169264 61169410 -181494943 - L2 LINE L2 -420 2893 2566 204 266 190 0 chr1 61169587 61169666 -181494687 - L2 LINE L2 -1039 2275 2182 856 279 226 9 chr1 61169667 61170234 -181494119 - L2 LINE L2 -1305 2009 1320 398 271 68 15 chr1 61170292 61170425 -181493928 + MIR SINE MIR 93 232 -30 623 297 181 18 chr1 61170453 61171005 -181493348 - L2 LINE L2 -1995 1319 678 2276 132 43 52 chr1 61171093 61171276 -181493077 - MER7C DNA MER2_type -2477 551 368 2516 53 0 0 chr1 61171276 61171579 -181492774 + AluY SINE Alu 1 303 -8 2276 132 43 52 chr1 61171579 61171841 -181492512 - MER7C DNA MER2_type -2660 368 110 3330 54 0 70 chr1 61171854 61172336 -181492017 - LTR7 LTR ERV1 -2 448 1 2621 95 48 24 chr1 61172336 61172921 -181491432 - HERVH LTR ERV1 0 7713 5600 4024 145 14 6 chr1 61172922 61173579 -181490774 - HERVH LTR ERV1 -2564 5149 4488 2624 117 0 5 chr1 61173581 61173982 -181490371 - HERVH LTR ERV1 -3720 3993 3595 15792 101 24 13 chr1 61174082 61177028 -181487325 - HERVH LTR ERV1 -4447 3266 1 3615 60 0 7 chr1 61177040 61177491 -181486862 - LTR7 LTR ERV1 -2 448 1 657 169 0 42 chr1 61177491 61177609 -181486744 - MER7C DNA MER2_type -489 113 1 310 262 221 22 chr1 61177611 61177878 -181486475 - L2 LINE L2 -2794 520 201 2213 106 6 0 chr1 61178736 61179047 -181485306 + AluSp SINE Alu 1 313 0 396 301 65 42 chr1 61179067 61179283 -181485070 - L2 LINE L2 -50 3263 3043 288 330 11 0 chr1 61179482 61179573 -181484780 + MER5A DNA MER1_type 96 187 -2 210 286 78 39 chr1 61179601 61179755 -181484598 + L2 LINE L2 2899 3058 -214 472 256 37 28 chr1 61180064 61180291 -181484062 + MIR3 SINE MIR 10 238 -24 204 135 0 0 chr1 61180987 61181024 -181483329 + (GA)n Simple_repeat Simple_repeat 1 37 0 1467 153 0 9 chr1 61181088 61181316 -181483037 + AluSx SINE Alu 55 280 -32 180 0 0 0 chr1 61181318 61181338 -181483015 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 265 248 95 19 chr1 61181811 61181916 -181482437 - L3 LINE CR1 -2 1575 1463 1975 119 0 23 chr1 61181989 61182292 -181482061 + AluSx SINE Alu 1 296 -16 195 100 0 0 chr1 61182446 61182476 -181481877 + (TA)n Simple_repeat Simple_repeat 2 31 0 496 292 161 21 chr1 61182638 61182881 -181481472 - MLT1L LTR MaLR -221 394 118 553 291 25 25 chr1 61183020 61183216 -181481137 - L2 LINE L2 0 3313 3118 462 276 97 123 chr1 61183271 61183465 -181480888 - L1ME LINE L1 -297 5824 5626 756 194 8 0 chr1 61183465 61183616 -181480737 + FLAM_A SINE Alu 1 152 0 462 276 97 123 chr1 61183616 61183874 -181480479 - L1ME LINE L1 -495 5626 5381 258 95 0 0 chr1 61183945 61183987 -181480366 + (TC)n Simple_repeat Simple_repeat 1 42 0 379 352 129 19 chr1 61184141 61184559 -181479794 + L2 LINE L2 2809 3272 0 192 329 173 12 chr1 61185088 61185367 -181478986 + L2 LINE L2 2717 3049 -223 233 284 220 0 chr1 61185421 61185530 -181478823 + MER5B DNA MER1_type 22 154 -24 818 293 32 4 chr1 61185699 61185948 -181478405 - MIR SINE MIR 0 262 7 235 319 98 47 chr1 61186036 61186503 -181477850 - L2 LINE L2 -52 3220 2723 384 234 81 48 chr1 61186685 61186740 -181477613 + MIR SINE MIR 92 144 -118 2111 131 3 0 chr1 61186740 61187052 -181477301 + AluSq SINE Alu 1 313 0 384 234 81 48 chr1 61187052 61187120 -181477233 + MIR SINE MIR 144 219 -43 528 261 28 57 chr1 61187619 61187830 -181476523 - MIR SINE MIR -41 221 17 206 293 129 29 chr1 61187961 61188101 -181476252 - MIR3 SINE MIR -48 160 7 1317 175 30 19 chr1 61188445 61188714 -181475639 + MER90 LTR ERV1 343 614 0 230 299 0 0 chr1 61188779 61188846 -181475507 - MIR SINE MIR -68 140 74 294 333 45 0 chr1 61188855 61188966 -181475387 + MER94 DNA DNA 19 134 0 369 270 18 36 chr1 61190026 61190137 -181474216 + L2 LINE L2 3146 3254 -18 1876 143 3 0 chr1 61190151 61190444 -181473909 - AluJb SINE Alu -18 294 1 293 294 60 92 chr1 61190786 61191068 -181473285 - L2 LINE L2 -118 3154 2882 2069 102 7 0 chr1 61191507 61191792 -181472561 - AluSx SINE Alu -23 289 3 263 301 89 24 chr1 61191971 61192094 -181472259 - L1MC/D LINE L1 -1945 5863 5733 333 215 21 21 chr1 61192621 61192714 -181471639 - L1MC/D LINE L1 -435 5686 5594 620 329 115 26 chr1 61192730 61193236 -181471117 + L1MC4a LINE L1 4799 5370 -776 1271 268 62 8 chr1 61193307 61193691 -181470662 + MLT1I LTR MaLR 2 406 -3 541 288 41 25 chr1 61193733 61193976 -181470377 + L1MC4a LINE L1 5602 5848 -1960 1069 258 147 25 chr1 61194164 61194613 -181469740 - MLT1D LTR MaLR 0 505 2 237 108 0 0 chr1 61197164 61197201 -181467152 + (CTG)n Simple_repeat Simple_repeat 1 37 0 189 242 61 0 chr1 61197400 61197466 -181466887 + MIR3 SINE MIR 109 178 -30 410 192 88 24 chr1 61198263 61198388 -181465965 + MIR SINE MIR 34 166 -96 322 383 69 0 chr1 61198694 61198869 -181465484 + L3 LINE CR1 1364 1550 -27 250 338 56 14 chr1 61198945 61199087 -181465266 - MIR3 SINE MIR -49 159 12 2145 94 0 50 chr1 61199239 61199557 -181464796 - AluSq SINE Alu -11 302 1 748 267 165 3 chr1 61199557 61199842 -181464511 + MER46C DNA MER2_type 5 335 -3 2734 144 21 14 chr1 61200062 61200491 -181463862 + MSTB1 LTR MaLR 1 432 0 541 315 8 18 chr1 61200598 61200786 -181463567 - MIR SINE MIR -69 193 5 384 262 163 24 chr1 61201432 61201643 -181462710 - MIR SINE MIR -4 258 26 219 200 14 114 chr1 61202042 61202112 -181462241 - MIR SINE MIR -108 100 38 262 240 280 10 chr1 61202279 61202379 -181461974 - L2 LINE L2 -10 3262 3136 497 219 67 13 chr1 61202565 61202748 -181461605 + MIR SINE MIR 29 229 -33 666 257 151 32 chr1 61202760 61202994 -181461359 - LTR33 LTR ERVL -85 436 231 2003 68 36 74 chr1 61202994 61203303 -181461050 - AluSx SINE Alu -15 297 1 666 257 151 32 chr1 61203303 61203446 -181460907 - LTR33 LTR ERVL -290 231 14 264 250 34 23 chr1 61204555 61204643 -181459710 - L2 LINE L2 -903 2411 2323 340 285 42 57 chr1 61204696 61204889 -181459464 + MIR SINE MIR 23 212 -50 917 237 169 23 chr1 61205319 61205702 -181458651 - MLT1C LTR MaLR -4 463 22 556 304 44 0 chr1 61205956 61206137 -181458216 + MIR SINE MIR 16 204 -58 502 330 76 61 chr1 61206205 61206599 -181457754 - L2 LINE L2 -7 3265 2866 635 213 140 62 chr1 61208067 61208377 -181455976 + MLT1C LTR MaLR 1 336 -131 500 315 56 30 chr1 61208630 61208935 -181455418 + LTR16B LTR ERVL 152 464 0 477 310 37 11 chr1 61209297 61209484 -181454869 + MIR SINE MIR 35 226 -36 210 189 75 0 chr1 61210745 61210798 -181453555 - MIR SINE MIR -71 137 81 183 308 19 0 chr1 61211328 61211380 -181452973 + L2 LINE L2 3199 3251 -21 2249 96 3 0 chr1 61211392 61211693 -181452660 + AluSx SINE Alu 1 302 -10 2339 76 0 0 chr1 61212014 61212315 -181452038 + AluY SINE Alu 1 301 -10 293 205 250 0 chr1 61212657 61212769 -181451584 + MIR SINE MIR 103 242 -20 2005 193 67 5 chr1 61212817 61213206 -181451147 - MLT2D LTR ERVL 0 414 2 223 128 64 0 chr1 61213507 61213554 -181450799 + (CGGG)n Simple_repeat Simple_repeat 4 53 0 257 333 114 23 chr1 61214275 61214407 -181449946 + L2 LINE L2 3085 3228 -85 223 261 90 18 chr1 61214423 61214534 -181449819 - L2 LINE L2 -168 3104 2986 453 273 119 4 chr1 61214879 61215106 -181449247 - L2 LINE L2 -39 3233 2981 234 156 0 0 chr1 61215203 61215248 -181449105 + (TG)n Simple_repeat Simple_repeat 1 45 0 321 26 0 0 chr1 61215952 61215990 -181448363 + (TG)n Simple_repeat Simple_repeat 2 39 0 347 306 66 0 chr1 61216551 61216672 -181447681 + L3 LINE CR1 1372 1500 -77 389 272 68 14 chr1 61217031 61217178 -181447175 + MIR SINE MIR 29 183 -79 358 188 26 31 chr1 61217257 61217364 -181446989 + MIR SINE MIR 18 116 -92 309 338 81 14 chr1 61218082 61218230 -181446123 - MIR SINE MIR -34 228 71 435 229 57 9 chr1 61218410 61218515 -181445838 - MIR SINE MIR -80 128 19 822 160 0 0 chr1 61219134 61219259 -181445094 - FLAM_C SINE Alu -18 125 1 221 236 251 50 chr1 61219658 61220366 -181443987 - L2 LINE L2 -23 3290 2365 274 308 118 24 chr1 61221562 61221731 -181442622 - MIR SINE MIR -58 204 20 1357 185 26 23 chr1 61222556 61222821 -181441532 + AluJb SINE Alu 5 270 -42 187 242 121 0 chr1 61226738 61226804 -181437549 + MIR SINE MIR 23 96 -166 1169 137 0 11 chr1 61226980 61227170 -181437183 + AluSg/x SINE Alu 122 309 -3 183 320 165 10 chr1 61227172 61227269 -181437084 - L2 LINE L2 -467 2847 2736 275 343 128 22 chr1 61227550 61228275 -181436078 - L2 LINE L2 -1132 2182 1381 316 307 98 13 chr1 61228282 61228435 -181435918 + MIR SINE MIR 85 250 -12 217 250 21 0 chr1 61228530 61228578 -181435775 + L2 LINE L2 3253 3301 -12 1832 115 14 11 chr1 61230235 61230514 -181433839 + L1MB3 LINE L1 5904 6183 0 317 253 58 35 chr1 61230614 61230701 -181433652 + MIR SINE MIR 155 243 -19 192 111 0 0 chr1 61231376 61231412 -181432941 + (A)n Simple_repeat Simple_repeat 1 36 0 1824 163 3 3 chr1 61231620 61231960 -181432393 + AluJb SINE Alu 1 312 0 378 0 0 0 chr1 61232894 61232936 -181431417 + (CAA)n Simple_repeat Simple_repeat 3 44 0 1537 185 39 11 chr1 61232953 61233239 -181431114 + AluJo SINE Alu 1 294 -18 257 328 126 22 chr1 61233810 61233993 -181430360 + L2 LINE L2 2500 2701 -613 298 309 125 24 chr1 61234239 61234407 -181429946 + L2 LINE L2 3087 3271 -1 22 56 0 0 chr1 61234408 61234444 -181429909 + AT_rich Low_complexity Low_complexity 1 36 0 473 304 33 33 chr1 61234601 61234785 -181429568 + MIR3 SINE MIR 22 205 -3 218 204 71 26 chr1 61235105 61235245 -181429108 - MIR SINE MIR -35 227 42 22 0 0 0 chr1 61235535 61235557 -181428796 + AT_rich Low_complexity Low_complexity 1 22 0 230 128 0 64 chr1 61236035 61236082 -181428271 + Charlie4 DNA MER1_type 1 44 -1917 217 225 8 50 chr1 61237094 61237214 -181427139 + (CA)n Simple_repeat Simple_repeat 1 115 0 529 239 74 55 chr1 61237686 61237849 -181426504 + MIR SINE MIR 46 211 -51 589 289 67 17 chr1 61239429 61239668 -181424685 + MIR SINE MIR 10 260 -2 1407 181 7 53 chr1 61239805 61240087 -181424266 + AluJb SINE Alu 36 304 -8 645 249 60 70 chr1 61243639 61244036 -181420317 + L1MC5 LINE L1 7397 7789 -172 827 305 69 16 chr1 61245062 61245479 -181418874 - L2 LINE L2 -246 3067 2631 447 294 91 51 chr1 61245617 61245967 -181418386 - L2 LINE L2 -1622 1692 1329 2132 91 25 3 chr1 61246181 61246466 -181417887 - AluSc SINE Alu -18 291 1 225 247 14 55 chr1 61247976 61248049 -181416304 - L2 LINE L2 0 3313 3244 1972 142 3 10 chr1 61248063 61248359 -181415994 + AluSx SINE Alu 1 294 -18 1723 178 116 3 chr1 61248412 61248715 -181415638 + MER1B DNA MER1_type 1 337 0 209 286 191 27 chr1 61250664 61250811 -181413542 + MIR SINE MIR 84 254 -8 363 119 107 24 chr1 61251448 61251532 -181412821 + L1MA6 LINE L1 6210 6300 0 659 235 170 7 chr1 61251532 61251821 -181412532 + Charlie7 DNA MER1_type 2015 2350 -262 189 0 0 0 chr1 61251960 61251981 -181412372 + (A)n Simple_repeat Simple_repeat 1 21 0 1864 150 0 23 chr1 61251983 61252289 -181412064 + AluJo SINE Alu 3 301 -11 26 0 0 0 chr1 61253559 61253585 -181410768 + AT_rich Low_complexity Low_complexity 1 26 0 24 77 0 0 chr1 61253678 61253730 -181410623 + AT_rich Low_complexity Low_complexity 1 52 0 2109 144 0 3 chr1 61256539 61256852 -181407501 + AluSx SINE Alu 1 312 0 2369 84 3 0 chr1 61257479 61257776 -181406577 + AluSp SINE Alu 1 298 -15 432 230 58 43 chr1 61259231 61259370 -181404983 - L2 LINE L2 -6 3307 3167 225 394 29 10 chr1 61260175 61260279 -181404074 + L2 LINE L2 2923 3028 -244 487 337 54 72 chr1 61260383 61260769 -181403584 + L2 LINE L2 2886 3264 -8 265 202 0 101 chr1 61263194 61263283 -181401070 - MIR SINE MIR 0 262 183 2369 107 0 0 chr1 61264822 61265131 -181399222 + AluSg SINE Alu 1 309 -1 337 328 52 0 chr1 61265207 61265323 -181399030 - L2 LINE L2 -7 3265 3144 1989 110 41 0 chr1 61266251 61266541 -181397812 - AluSx SINE Alu -10 302 1 294 263 67 39 chr1 61267798 61268014 -181396339 - L2 LINE L2 0 3313 3037 355 286 38 45 chr1 61268019 61268152 -181396201 + MIR SINE MIR 11 142 -120 189 290 57 40 chr1 61268264 61268388 -181395965 + MIR SINE MIR 137 262 0 492 217 22 14 chr1 61269322 61269460 -181394893 + L1MB3 LINE L1 2888 3026 -3120 6545 86 12 1 chr1 61269462 61270393 -181393960 - L1PA7 LINE L1 -2919 3227 2287 * 9871 0 100 97 chr1 61270384 61270993 -181393360 + L1PA7 LINE L1 3223 3829 -2325 9871 82 26 16 chr1 61270993 61272499 -181391854 + L1PA7 LINE L1 3960 5500 -654 2461 17 76 0 chr1 61272499 61272787 -181391566 + AluYa5 SINE Alu 1 310 -1 9871 82 26 16 chr1 61272787 61273448 -181390905 + L1PA7 LINE L1 5500 6153 -1 8377 187 60 29 chr1 61273450 61274717 -181389636 + L1MB3 LINE L1 3012 4238 -1945 * 2853 6 0 25 chr1 61274717 61275042 -181389311 + AluYb8 SINE Alu 1 317 -1 8377 187 60 29 chr1 61275042 61276861 -181387492 + L1MB3 LINE L1 4238 6183 0 326 247 31 48 chr1 61276898 61277125 -181387228 - L1M4 LINE L1 -802 5344 5122 261 173 0 0 chr1 61277134 61277186 -181387167 + L1MB3 LINE L1 6017 6068 -115 254 391 68 0 chr1 61278909 61279042 -181385311 + L2 LINE L2 3116 3257 -15 2136 254 161 23 chr1 61279252 61280299 -181384054 - L2 LINE L2 -1 3312 2110 196 286 43 29 chr1 61280492 61280562 -181383791 + L2 LINE L2 3237 3307 -6 358 215 186 45 chr1 61281089 61281266 -181383087 + L1ME3 LINE L1 5940 6141 -21 276 195 24 61 chr1 61281538 61281620 -181382733 - L1ME3A LINE L1 0 6170 6092 980 251 95 44 chr1 61283200 61283838 -181380515 + L2 LINE L2 2622 3276 -37 6281 36 0 3 chr1 61284337 61285090 -181379263 - L1PA3 LINE L1 0 6155 5405 1624 201 3 16 chr1 61285986 61286289 -181378064 - AluJb SINE Alu -10 302 4 186 339 110 25 chr1 61286299 61286417 -181377936 + L2 LINE L2 3148 3275 -38 189 194 0 0 chr1 61287249 61287280 -181377073 - L2 LINE L2 -18 3295 3265 261 246 144 110 chr1 61287290 61287408 -181376945 - MIR SINE MIR -121 141 20 358 286 91 55 chr1 61287489 61287709 -181376644 + MIR SINE MIR 33 260 -2 1004 185 11 0 chr1 61289447 61289625 -181374728 + MLT1A1 LTR MaLR 183 362 -3 497 261 23 15 chr1 61290690 61290820 -181373533 + MIR3 SINE MIR 59 189 -19 1901 140 20 0 chr1 61290911 61291204 -181373149 - AluJo SINE Alu -13 299 1 25 65 0 0 chr1 61292393 61292439 -181371914 + AT_rich Low_complexity Low_complexity 1 46 0 728 148 0 9 chr1 61292439 61292554 -181371799 - FLAM_C SINE Alu -27 116 3 2011 107 38 0 chr1 61292596 61292886 -181371467 + MER46B DNA MER2_type 1 176 -60 2458 262 142 33 chr1 61293187 61294691 -181369662 - L2 LINE L2 0 3313 1660 22 35 0 0 chr1 61295022 61295051 -181369302 + AT_rich Low_complexity Low_complexity 1 29 0 515 223 16 16 chr1 61295216 61295337 -181369016 - L2 LINE L2 0 3313 3193 644 280 43 58 chr1 61295401 61295730 -181368623 + L2 LINE L2 2856 3179 -134 395 183 14 0 chr1 61296105 61296176 -181368177 + FLAM_A SINE Alu 2 73 -59 203 114 57 0 chr1 61296505 61296540 -181367813 + CT-rich Low_complexity Low_complexity 4 40 0 24 0 0 0 chr1 61297406 61297430 -181366923 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr1 61298326 61298372 -181365981 + AT_rich Low_complexity Low_complexity 1 46 0 1047 180 32 23 chr1 61299032 61299249 -181365104 - MER20 DNA MER1_type 0 219 1 23 33 0 0 chr1 61299929 61299959 -181364394 + AT_rich Low_complexity Low_complexity 1 30 0 4120 169 50 27 chr1 61301576 61301924 -181362429 + L1MB7 LINE L1 5080 5419 -765 2165 109 3 3 chr1 61301924 61302226 -181362127 + AluSx SINE Alu 1 302 -10 4120 169 50 27 chr1 61302226 61302938 -181361415 + L1MB7 LINE L1 5419 6165 -19 283 258 142 8 chr1 61303620 61303740 -181360613 - MIR SINE MIR -7 255 120 260 263 40 0 chr1 61304761 61304837 -181359516 - L1MD2 LINE L1 -264 6095 6017 26 30 0 0 chr1 61305278 61305311 -181359042 + AT_rich Low_complexity Low_complexity 1 33 0 275 285 44 57 chr1 61306860 61307018 -181357335 + HsTC2 DNA Tc2 1 156 -1742 584 333 23 7 chr1 61307231 61307537 -181356816 + HsTC2 DNA Tc2 566 876 -1022 21 36 0 0 chr1 61307907 61307935 -181356418 + AT_rich Low_complexity Low_complexity 1 28 0 708 328 168 6 chr1 61308190 61308541 -181355812 - L3 LINE CR1 -16 1561 1154 188 226 132 38 chr1 61308761 61308814 -181355539 - L2 LINE L2 -12 3260 3203 23 33 0 0 chr1 61310892 61310922 -181353431 + AT_rich Low_complexity Low_complexity 1 30 0 437 218 91 55 chr1 61312871 61313036 -181351317 + LTR50 LTR ERVL 17 187 -608 402 254 14 36 chr1 61313200 61313338 -181351015 + LTR33A LTR ERVL 389 523 0 667 324 139 22 chr1 61313354 61313842 -181350511 - L2 LINE L2 -845 2469 1925 26 30 0 0 chr1 61313872 61313905 -181350448 + AT_rich Low_complexity Low_complexity 1 33 0 227 108 27 0 chr1 61313941 61313978 -181350375 + MIR SINE MIR 56 93 -115 21 0 0 0 chr1 61313981 61314002 -181350351 + AT_rich Low_complexity Low_complexity 1 21 0 2313 102 0 3 chr1 61314821 61315125 -181349228 + AluSx SINE Alu 1 303 -9 253 289 40 0 chr1 61315545 61315621 -181348732 + MLT1K LTR MaLR 510 588 0 492 228 41 32 chr1 61317703 61317826 -181346527 - MIR SINE MIR -74 188 65 26 50 0 0 chr1 61318107 61318147 -181346206 + AT_rich Low_complexity Low_complexity 1 40 0 2387 103 0 0 chr1 61318362 61318672 -181345681 + AluSg SINE Alu 1 310 0 21 0 0 0 chr1 61318860 61318881 -181345472 + AT_rich Low_complexity Low_complexity 1 21 0 188 338 26 0 chr1 61319146 61319223 -181345130 - MIR SINE MIR -72 190 112 22 0 0 0 chr1 61319223 61319245 -181345108 + AT_rich Low_complexity Low_complexity 1 22 0 325 335 24 18 chr1 61319638 61319805 -181344548 + L1 LINE L1 4482 4649 -1497 732 298 114 40 chr1 61319871 61320979 -181343374 + L1MC4a LINE L1 4428 5176 -970 1186 219 17 13 chr1 61320979 61321217 -181343136 - MER8 DNA MER2_type 0 239 1 732 298 114 40 chr1 61321217 61321458 -181342895 + L1MC4a LINE L1 5176 5398 -748 1596 84 0 0 chr1 61323280 61323495 -181340858 - L1MA1 LINE L1 -4 6298 6084 36 0 0 0 chr1 61323498 61323534 -181340819 + AT_rich Low_complexity Low_complexity 1 36 0 1381 290 180 39 chr1 61324328 61325573 -181338780 - L2 LINE L2 -47 3266 1840 1525 293 78 33 chr1 61325636 61327051 -181337302 + L1MEd LINE L1 72 1588 -4722 433 291 91 14 chr1 61327323 61327533 -181336820 - L2 LINE L2 -1529 1785 1560 219 229 60 48 chr1 61327626 61327709 -181336644 - MIR SINE MIR -6 256 173 634 202 125 6 chr1 61327742 61327910 -181336443 + MIR SINE MIR 2 189 -73 223 298 119 0 chr1 61328134 61328169 -181336184 + L2 LINE L2 3169 3198 -74 230 195 0 0 chr1 61328169 61328210 -181336143 + MIR SINE MIR 210 250 -12 534 293 24 12 chr1 61330099 61330263 -181334090 + MIR SINE MIR 47 212 -50 390 202 48 16 chr1 61330439 61330563 -181333790 + HsTC2 DNA Tc2 1625 1752 -146 660 159 14 35 chr1 61332054 61332199 -181332154 - FLAM_C SINE Alu -1 142 1 28 0 0 0 chr1 61332377 61332405 -181331948 + AT_rich Low_complexity Low_complexity 1 28 0 2210 114 0 3 chr1 61332489 61332795 -181331558 - AluSg SINE Alu -5 305 1 321 245 61 20 chr1 61332907 61333005 -181331348 - L2 LINE L2 -2 3270 3169 22 35 0 0 chr1 61333402 61333431 -181330922 + AT_rich Low_complexity Low_complexity 1 29 0 1730 138 56 0 chr1 61334108 61334404 -181329949 + AluJb SINE Alu 26 336 0 190 245 170 0 chr1 61334484 61334537 -181329816 + L2 LINE L2 3252 3313 0 263 224 0 35 chr1 61334647 61334705 -181329648 + L2 LINE L2 3207 3262 -10 186 291 36 0 chr1 61334847 61334902 -181329451 + MIR SINE MIR 184 240 -22 312 362 57 7 chr1 61335052 61335193 -181329160 - MIR3 SINE MIR -19 189 42 2293 52 3 28 chr1 61335656 61336000 -181328353 + AluY SINE Alu 1 337 0 814 137 0 0 chr1 61336012 61336168 -181328185 + FLAM_C SINE Alu 1 156 0 1472 291 79 66 chr1 61336218 61337308 -181327045 + L2 LINE L2 1731 2834 -480 971 248 159 27 chr1 61337381 61337884 -181326469 + MLT1G3 LTR MaLR 13 506 -24 545 293 111 12 chr1 61337945 61338198 -181326155 + L2 LINE L2 3036 3313 0 1552 138 70 94 chr1 61339032 61339315 -181325038 + MLT1B LTR MaLR 1 274 -116 2410 78 0 10 chr1 61339315 61339621 -181324732 - AluSc SINE Alu -6 303 1 1552 138 70 94 chr1 61339621 61339720 -181324633 + MLT1B LTR MaLR 274 374 -16 1221 203 146 104 chr1 61339852 61339988 -181324365 + L1MC4 LINE L1 7387 7516 -526 2114 120 0 13 chr1 61339988 61340287 -181324066 - AluSx SINE Alu -17 295 1 1221 203 146 104 chr1 61340287 61340717 -181323636 + L1MC4 LINE L1 7516 7977 -65 844 227 111 14 chr1 61340725 61341181 -181323172 + L1MB7 LINE L1 2156 2656 -3726 9171 190 77 70 chr1 61341188 61341338 -181323015 + L1MB7 LINE L1 2507 2655 -3765 1915 162 0 3 chr1 61341338 61341628 -181322725 - AluJb SINE Alu -23 289 1 9171 190 77 70 chr1 61341628 61342225 -181322128 + L1MB7 LINE L1 2655 3247 -3173 1525 192 24 7 chr1 61342225 61342512 -181321841 - AluJo SINE Alu -8 304 13 9171 190 77 70 chr1 61342512 61342830 -181321523 + L1MB7 LINE L1 3247 3561 -2859 1697 177 3 29 chr1 61342830 61343140 -181321213 - AluJb SINE Alu -10 302 1 9171 190 77 70 chr1 61343140 61343507 -181320846 + L1MB7 LINE L1 3561 3924 -2496 3757 162 29 7 chr1 61343507 61344223 -181320130 + L1MB3 LINE L1 5450 6181 -2 9171 190 77 70 chr1 61344223 61345948 -181318405 + L1MB7 LINE L1 3924 5688 -732 2406 88 0 16 chr1 61345948 61346266 -181318087 + AluSq SINE Alu 1 313 0 9171 190 77 70 chr1 61346266 61347002 -181317351 + L1MB7 LINE L1 5688 6418 -2 24 0 0 51 chr1 61347139 61347162 -181317191 + AT_rich Low_complexity Low_complexity 1 23 -14 2304 107 10 0 chr1 61347162 61347471 -181316882 + AluSx SINE Alu 1 312 0 24 0 0 51 chr1 61347471 61347486 -181316867 + AT_rich Low_complexity Low_complexity 23 37 0 275 289 111 0 chr1 61347916 61348006 -181316347 - L2 LINE L2 -4 3268 3169 30 27 0 0 chr1 61348269 61348306 -181316047 + AT_rich Low_complexity Low_complexity 1 37 0 2292 93 0 3 chr1 61348768 61349068 -181315285 - AluSg SINE Alu -11 299 1 604 212 29 15 chr1 61350248 61350385 -181313968 - MER2 DNA MER2_type -25 320 182 1281 90 0 120 chr1 61350417 61350650 -181313703 - MER2 DNA MER2_type -140 205 1 336 229 37 117 chr1 61350949 61351137 -181313216 - MIR SINE MIR -6 256 84 256 290 18 3 chr1 61351539 61351626 -181312727 + MIR SINE MIR 45 132 -76 897 192 6 6 chr1 61351734 61351901 -181312452 + AluJb SINE Alu 137 303 -9 183 129 0 0 chr1 61351936 61351967 -181312386 + (TC)n Simple_repeat Simple_repeat 2 32 0 181 266 18 97 chr1 61352350 61352463 -181311890 + L2 LINE L2 2716 2819 -495 268 290 129 0 chr1 61352554 61352647 -181311706 + L2 LINE L2 2944 3048 -224 2132 151 11 0 chr1 61352878 61353242 -181311111 + L1MB2 LINE L1 5804 6171 0 896 211 62 5 chr1 61353353 61353562 -181310791 + L2 LINE L2 1928 2148 -1166 610 244 72 32 chr1 61353603 61353824 -181310529 - MER106A DNA MER1_type 0 236 7 747 228 36 10 chr1 61353824 61354017 -181310336 + L2 LINE L2 2193 2390 -924 356 283 34 8 chr1 61354017 61354208 -181310145 + L2 LINE L2 2731 2966 -348 393 290 0 0 chr1 61354246 61354339 -181310014 + MER58 DNA MER1_type 182 274 -2146 1044 239 79 56 chr1 61354380 61354735 -181309618 + L2 LINE L2 2951 3313 0 297 308 83 25 chr1 61354961 61355081 -181309272 - L3 LINE CR1 -50 1527 1401 29 28 0 0 chr1 61355390 61355426 -181308927 + AT_rich Low_complexity Low_complexity 1 36 0 787 173 0 0 chr1 61355426 61355553 -181308800 - FLAM_C SINE Alu -6 127 1 229 274 137 14 chr1 61355680 61355753 -181308600 + MIR3 SINE MIR 14 95 -113 670 165 222 34 chr1 61355754 61355930 -181308423 - MER20 DNA MER1_type 0 219 11 255 284 63 11 chr1 61355936 61356031 -181308322 + MIR3 SINE MIR 103 202 -6 2178 133 3 0 chr1 61356282 61356590 -181307763 + AluSx SINE Alu 4 312 0 966 235 101 31 chr1 61356590 61356860 -181307493 + L1MC4 LINE L1 7629 7879 -163 279 0 0 0 chr1 61356860 61356891 -181307462 + (TG)n Simple_repeat Simple_repeat 1 31 0 219 36 0 0 chr1 61356890 61356918 -181307435 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 966 235 101 31 chr1 61356891 61357034 -181307319 + L1MC4 LINE L1 7879 8042 0 2056 114 18 75 chr1 61357057 61357443 -181306910 - THE1B LTR MaLR 0 364 1 2348 92 10 0 chr1 61358591 61358895 -181305458 + AluSg SINE Alu 1 307 -3 2319 109 0 0 chr1 61359666 61359970 -181304383 - AluSx SINE Alu -8 304 1 1416 131 66 0 chr1 61360212 61360456 -181303897 + Tigger7 DNA MER2_type 2323 2582 -5 391 281 0 42 chr1 61361967 61362063 -181302290 + L2 LINE L2 3174 3265 -7 275 296 99 47 chr1 61363191 61363363 -181300990 - MIR3 SINE MIR -8 200 20 195 286 13 26 chr1 61363604 61363681 -181300672 - L2 LINE L2 -218 3054 2979 1510 178 44 27 chr1 61364147 61364440 -181299913 + AluJb SINE Alu 1 298 -14 1076 220 179 17 chr1 61364719 61365015 -181299338 - MER2 DNA MER2_type 0 344 1 230 103 0 51 chr1 61365464 61365503 -181298850 + L1MC3 LINE L1 6431 6467 -1318 2255 121 0 3 chr1 61365607 61365914 -181298439 + AluSx SINE Alu 1 306 -6 2328 102 0 0 chr1 61365918 61366223 -181298130 + AluSg SINE Alu 2 306 -4 318 345 146 12 chr1 61368448 61368613 -181295740 + L3b LINE CR1 1373 1559 -24 180 140 474 0 chr1 61368872 61368929 -181295424 + MIR3 SINE MIR 74 157 -51 359 305 40 20 chr1 61369297 61369448 -181294905 + MIR3 SINE MIR 19 172 -36 222 236 42 42 chr1 61369621 61369693 -181294660 + MIR SINE MIR 8 79 -183 190 259 52 0 chr1 61369748 61369806 -181294547 + L2 LINE L2 3241 3301 -12 201 121 0 0 chr1 61372125 61372158 -181292195 + (CCG)n Simple_repeat Simple_repeat 2 34 0 26 50 0 0 chr1 61372158 61372198 -181292155 + GC_rich Low_complexity Low_complexity 1 40 0 180 77 0 0 chr1 61372608 61372634 -181291719 + (TCC)n Simple_repeat Simple_repeat 1 26 0 1192 108 102 0 chr1 61373703 61373879 -181290474 + MER30 DNA MER1_type 1 194 -36 47 53 0 0 chr1 61374630 61374705 -181289648 + AT_rich Low_complexity Low_complexity 1 75 0 293 329 47 88 chr1 61375452 61375838 -181288515 - L2 LINE L2 -23 3249 2880 282 128 170 0 chr1 61375863 61375910 -181288443 + Tigger4(Zombi) DNA MER2_type 3 57 -2674 921 109 0 36 chr1 61375932 61376070 -181288283 - AluJb SINE Alu -179 133 1 2225 123 7 0 chr1 61376081 61376381 -181287972 - AluSx SINE Alu -10 302 1 472 239 22 0 chr1 61376382 61376474 -181287879 + Tigger4(Zombi) DNA MER2_type 45 138 -2593 * 2355 115 14 11 chr1 61376467 61376806 -181287547 + Tigger4(Zombi) DNA MER2_type 2205 2547 -184 527 103 13 0 chr1 61376806 61376884 -181287469 - MADE1 DNA Mariner 0 80 2 2355 115 14 11 chr1 61376884 61376901 -181287452 + Tigger4(Zombi) DNA MER2_type 2547 2562 -169 2072 136 3 3 chr1 61376901 61377196 -181287157 + AluSq SINE Alu 1 295 -18 952 138 14 0 chr1 61377196 61377341 -181287012 + AluSg/x SINE Alu 132 278 -32 240 35 0 0 chr1 61377341 61377370 -181286983 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 942 140 0 100 chr1 61377372 61377409 -181286944 + Tigger4(Zombi) DNA MER2_type 2552 2591 -140 2159 88 3 21 chr1 61377409 61377692 -181286661 + AluSc SINE Alu 1 278 -31 186 43 0 0 chr1 61377695 61377718 -181286635 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 942 140 0 100 chr1 61377718 61377876 -181286477 + Tigger4(Zombi) DNA MER2_type 2593 2731 0 400 384 9 0 chr1 61377877 61378106 -181286247 - L2 LINE L2 -461 2853 2623 547 296 74 36 chr1 61378191 61378441 -181285912 - L1ME LINE L1 -4951 2187 1948 1643 142 11 35 chr1 61378441 61378723 -181285630 - AluJo SINE Alu -5 307 33 547 296 74 36 chr1 61378723 61378814 -181285539 - L1ME LINE L1 -5190 1948 1862 2509 84 0 0 chr1 61378814 61379123 -181285230 - AluY SINE Alu -2 309 1 547 296 74 36 chr1 61379123 61379416 -181284937 - L1ME LINE L1 -5276 1862 1348 1562 103 138 0 chr1 61381333 61381565 -181282788 + AluSg SINE Alu 36 299 -11 312 266 195 22 chr1 61381682 61381839 -181282514 - MLT1H LTR MaLR 0 555 369 835 216 23 6 chr1 61382062 61382233 -181282120 + FAM SINE Alu 1 174 -1 349 284 13 10 chr1 61382488 61382649 -181281704 - L1ME LINE L1 -5867 1080 919 207 0 0 0 chr1 61383160 61383183 -181281170 + (A)n Simple_repeat Simple_repeat 1 23 0 3382 142 61 20 chr1 61383250 61383905 -181280448 - L1MB7 LINE L1 -9 6175 5494 2240 109 3 0 chr1 61383929 61384222 -181280131 - AluSp SINE Alu -17 296 3 1012 113 0 0 chr1 61384234 61384367 -181279986 - AluSq/x SINE Alu -180 133 1 2624 209 26 36 chr1 61384389 61385083 -181279270 - L1MB7 LINE L1 -1721 4425 3739 2421 90 0 0 chr1 61385095 61385396 -181278957 + AluY SINE Alu 1 301 -10 28 0 0 0 chr1 61385425 61385453 -181278900 + AT_rich Low_complexity Low_complexity 1 28 0 2193 118 0 0 chr1 61385466 61385754 -181278599 - AluSc SINE Alu -21 288 1 2248 98 0 20 chr1 61385756 61386062 -181278291 - AluSx SINE Alu -12 300 1 184 353 25 25 chr1 61386540 61386659 -181277694 - L2 LINE L2 -529 2785 2667 2117 103 3 17 chr1 61387163 61387455 -181276898 - AluSq SINE Alu -25 288 1 24 0 0 0 chr1 61388373 61388397 -181275956 + AT_rich Low_complexity Low_complexity 1 24 0 345 281 41 8 chr1 61389012 61389133 -181275220 - MIR3 SINE MIR -22 186 62 205 203 85 0 chr1 61389563 61389622 -181274731 - MIR SINE MIR -71 191 128 302 216 27 14 chr1 61389632 61389706 -181274647 - MLT1K LTR MaLR -22 566 492 3829 112 57 24 chr1 61389964 61390578 -181273775 - MER41B LTR ERV1 0 635 2 305 286 0 26 chr1 61390670 61390766 -181273587 - MIR SINE MIR -111 97 5 212 333 0 0 chr1 61391412 61391481 -181272872 + MIR SINE MIR 163 231 -31 2101 121 3 23 chr1 61391623 61391928 -181272425 + AluSx SINE Alu 1 299 -13 1550 186 63 48 chr1 61392314 61392392 -181271961 - MER63B DNA MER1_type -657 405 330 2304 85 7 0 chr1 61392392 61392685 -181271668 + AluSx SINE Alu 1 295 -17 1550 186 63 48 chr1 61392685 61393005 -181271348 - MER63B DNA MER1_type -732 330 1 188 243 14 0 chr1 61393459 61393533 -181270820 + (TA)n Simple_repeat Simple_repeat 2 76 0 377 290 22 22 chr1 61393550 61393688 -181270665 + L2 LINE L2 3169 3306 -7 700 199 0 22 chr1 61394288 61394424 -181269929 - FLAM_C SINE Alu 0 133 1 1463 148 124 32 chr1 61394431 61394714 -181269639 - AluSg SINE Alu -1 309 1 24 0 0 0 chr1 61394965 61394989 -181269364 + AT_rich Low_complexity Low_complexity 1 24 0 2307 100 3 0 chr1 61395119 61395420 -181268933 + AluSq SINE Alu 1 302 -11 206 346 39 0 chr1 61395566 61395670 -181268683 + L3b LINE CR1 1305 1412 -171 21 71 0 0 chr1 61395675 61395717 -181268636 + AT_rich Low_complexity Low_complexity 1 42 0 1937 142 0 64 chr1 61396042 61396372 -181267981 + AluJo SINE Alu 3 311 -1 2158 104 31 0 chr1 61396501 61396789 -181267564 - AluSg1 SINE Alu -12 297 1 408 190 20 50 chr1 61397275 61397375 -181266978 - MER5A DNA MER1_type -83 106 10 1329 0 7 0 chr1 61397465 61397606 -181266747 - AluY SINE Alu -169 142 1 2179 85 53 0 chr1 61397804 61398085 -181266268 - AluSx SINE Alu -16 296 1 390 313 108 6 chr1 61398085 61398261 -181266092 + L2 LINE L2 2507 2700 -614 2931 218 44 26 chr1 61398261 61399072 -181265281 + L1MD2 LINE L1 3685 4510 -1636 * 3048 238 33 91 chr1 61399059 61399200 -181265153 + L1MD2 LINE L1 5471 5619 -740 2189 117 3 0 chr1 61399200 61399500 -181264853 + AluSq SINE Alu 1 301 -12 3048 238 33 91 chr1 61399500 61399735 -181264618 + L1MD2 LINE L1 5619 5866 -493 1556 180 85 0 chr1 61399735 61400007 -181264346 - AluJb SINE Alu -16 296 2 3048 238 33 91 chr1 61400007 61400372 -181263981 + L1MD2 LINE L1 5866 6151 -208 333 0 0 0 chr1 61400372 61400409 -181263944 + (CA)n Simple_repeat Simple_repeat 1 37 0 3048 238 33 91 chr1 61400409 61400598 -181263755 + L1MD2 LINE L1 6151 6349 -10 529 283 164 39 chr1 61400598 61401102 -181263251 + L2 LINE L2 2703 3274 -39 202 211 0 0 chr1 61401122 61401160 -181263193 + (CA)n Simple_repeat Simple_repeat 2 39 0 2187 117 0 17 chr1 61402221 61402520 -181261833 - AluSx SINE Alu -18 294 1 342 0 0 0 chr1 61402709 61402747 -181261606 + (TG)n Simple_repeat Simple_repeat 1 38 0 252 0 0 0 chr1 61402746 61402774 -181261579 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1315 194 71 21 chr1 61403117 61403400 -181260953 - AluJo SINE Alu -15 297 1 553 253 58 42 chr1 61403665 61404105 -181260248 - LTR33 LTR ERVL 0 521 44 294 302 64 29 chr1 61404986 61405158 -181259195 + L2 LINE L2 2629 2806 -508 1720 319 83 38 chr1 61405461 61406939 -181257414 + L2 LINE L2 1710 3249 -23 274 252 168 0 chr1 61407184 61407291 -181257062 + MIR3 SINE MIR 33 157 -51 821 256 47 94 chr1 61407297 61407765 -181256588 - LTR67 LTR ERVL -6 551 106 491 287 38 38 chr1 61408673 61408882 -181255471 - MARNA DNA Mariner -13 573 365 487 313 77 5 chr1 61408954 61409149 -181255204 + MIR SINE MIR 3 211 -51 1957 150 7 3 chr1 61409197 61409503 -181254850 - AluJb SINE Alu -5 307 1 350 296 0 37 chr1 61409677 61409785 -181254568 - MIR SINE MIR -138 124 21 409 331 117 4 chr1 61410089 61410337 -181254016 + L2 LINE L2 2694 2969 -345 975 112 0 8 chr1 61410950 61411084 -181253269 + AluJo SINE Alu 2 134 -178 570 297 42 21 chr1 61411109 61411301 -181253052 - MIR SINE MIR -10 252 57 302 313 32 81 chr1 61411552 61411611 -181252742 + MIR SINE MIR 21 81 -181 2175 94 3 17 chr1 61411611 61411922 -181252431 - AluSx SINE Alu 0 307 1 302 313 32 81 chr1 61411922 61412107 -181252246 + MIR SINE MIR 81 254 -8 2277 104 0 0 chr1 61412273 61412562 -181251791 - AluSx SINE Alu -18 294 6 1595 224 34 0 chr1 61412596 61412890 -181251463 + Tigger5 DNA MER2_type 1 304 -2019 1169 114 11 0 chr1 61412898 61413082 -181251271 + Tigger5 DNA MER2_type 2112 2297 -26 257 316 110 15 chr1 61413208 61413344 -181251009 - MIR SINE MIR -54 208 60 238 240 0 0 chr1 61413391 61413441 -181250912 + L1ME LINE L1 5620 5669 -452 196 42 0 0 chr1 61413958 61413982 -181250371 + (TTTA)n Simple_repeat Simple_repeat 2 136 0 1669 151 29 14 chr1 61413982 61414260 -181250093 - AluSx SINE Alu -1 305 1 2124 123 7 3 chr1 61414473 61414773 -181249580 - AluSq SINE Alu -12 301 1 324 241 170 9 chr1 61414774 61414886 -181249467 + MIR SINE MIR 47 176 -86 22 0 0 0 chr1 61415960 61415982 -181248371 + AT_rich Low_complexity Low_complexity 1 22 0 1279 122 31 48 chr1 61416002 61416231 -181248122 + AluSg/x SINE Alu 88 312 0 488 264 19 0 chr1 61416561 61416667 -181247686 - MER81 DNA DNA 0 114 7 728 203 20 41 chr1 61416926 61417123 -181247230 - MIR SINE MIR 0 262 70 238 321 73 0 chr1 61417131 61417240 -181247113 + L1ME LINE L1 5673 5789 -332 310 315 94 64 chr1 61417710 61418162 -181246191 - L2 LINE L2 -23 3249 2774 2117 129 0 3 chr1 61418162 61418457 -181245896 + AluSx SINE Alu 1 294 -18 310 315 94 64 chr1 61418457 61418639 -181245714 - L2 LINE L2 -498 2774 2599 188 237 51 17 chr1 61418667 61418726 -181245627 + MIR SINE MIR 90 150 -58 255 103 0 0 chr1 61419668 61419707 -181244646 + (GA)n Simple_repeat Simple_repeat 2 40 0 608 164 27 18 chr1 61419806 61419916 -181244437 - MER81 DNA DNA -3 111 1 291 290 130 0 chr1 61420124 61420224 -181244129 + MIR3 SINE MIR 87 199 -9 2217 92 11 0 chr1 61420545 61420829 -181243524 + AluSq SINE Alu 1 287 -26 1060 208 71 91 chr1 61420963 61421282 -181243071 - LTR16A1 LTR ERVL 0 457 146 1940 121 7 0 chr1 61421282 61421554 -181242799 - AluSx SINE Alu -8 304 31 1060 208 71 91 chr1 61421554 61421642 -181242711 - LTR16A1 LTR ERVL -311 146 58 495 321 50 66 chr1 61421918 61422331 -181242022 + L1ME LINE L1 5262 5672 -449 330 306 126 31 chr1 61422353 61422575 -181241778 - MIR SINE MIR -17 245 3 220 392 0 0 chr1 61422921 61422995 -181241358 + L2 LINE L2 3126 3199 -73 1108 248 16 13 chr1 61423123 61423396 -181240957 - L1M3 LINE L1 -415 5753 5474 2071 105 20 27 chr1 61423500 61423659 -181240694 - AluSp SINE Alu -19 294 135 206 61 0 30 chr1 61423659 61423692 -181240661 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2147 98 0 0 chr1 61423692 61423969 -181240384 - AluSc SINE Alu -32 277 1 2071 105 20 27 chr1 61423969 61424104 -181240249 - AluSp SINE Alu -176 137 1 8926 213 60 53 chr1 61424104 61426374 -181237979 - L1MDa LINE L1 -717 5919 3665 2307 109 7 0 chr1 61426374 61426678 -181237675 - AluSg SINE Alu -4 306 1 8926 213 60 53 chr1 61426678 61426952 -181237401 - L1MDa LINE L1 -2971 3665 3394 1346 128 243 8 chr1 61426952 61427195 -181237158 - AluSg SINE Alu 0 300 1 8926 213 60 53 chr1 61427195 61427852 -181236501 - L1MDa LINE L1 -3242 3394 2743 1470 153 91 36 chr1 61427852 61428126 -181236227 - AluJo SINE Alu -23 289 1 8926 213 60 53 chr1 61428126 61428232 -181236121 - L1MDa LINE L1 -3893 2743 2639 1916 168 0 0 chr1 61428232 61428523 -181235830 - AluSx SINE Alu -21 291 1 8926 213 60 53 chr1 61428523 61428820 -181235533 - L1MDa LINE L1 -3997 2639 2284 2046 117 0 0 chr1 61428833 61429097 -181235256 - AluSx SINE Alu -23 289 26 1518 141 12 12 chr1 61429097 61429328 -181235025 + MLT1A1 LTR MaLR 129 362 -3 372 207 26 98 chr1 61429328 61429521 -181234832 - L1MDa LINE L1 -5048 1492 1314 * 1072 180 0 94 chr1 61429516 61429555 -181234798 - L1MC1 LINE L1 -5 6328 6287 2330 90 10 3 chr1 61429555 61429855 -181234498 + AluSp SINE Alu 1 302 -11 1072 180 0 94 chr1 61429855 61430059 -181234294 - L1MC1 LINE L1 -46 6287 6108 * 5662 184 57 59 chr1 61430057 61430943 -181233410 - L1MDa LINE L1 -5200 1340 455 510 17 0 0 chr1 61430943 61431002 -181233351 + (TG)n Simple_repeat Simple_repeat 2 60 0 5662 184 57 59 chr1 61431002 61431439 -181232914 - L1MDa LINE L1 -6085 455 19 2397 155 25 11 chr1 61431483 61431922 -181232431 + L1MC1 LINE L1 5888 6332 -1 201 284 15 15 chr1 61432163 61432230 -181232123 + MIR3 SINE MIR 108 174 -34 339 247 0 14 chr1 61432933 61433006 -181231347 + MER112 DNA MER1_type 2 73 -187 324 176 162 70 chr1 61433064 61433206 -181231147 - MER112 DNA MER1_type -89 171 17 325 215 21 32 chr1 61433267 61433360 -181230993 - MER103 DNA DNA -52 114 23 183 250 19 0 chr1 61433611 61433663 -181230690 - MIR SINE MIR -98 110 58 655 221 47 0 chr1 61434201 61434373 -181229980 + LTR33 LTR ERVL 35 214 -307 315 217 75 38 chr1 61434492 61434598 -181229755 + LTR33 LTR ERVL 411 520 -1 326 168 84 27 chr1 61434762 61434876 -181229477 - MER5B DNA MER1_type -35 143 36 261 146 0 0 chr1 61434959 61435007 -181229346 + (TG)n Simple_repeat Simple_repeat 1 48 0 688 206 26 26 chr1 61435896 61436051 -181228302 - FRAM SINE Alu -23 153 1 2208 91 7 7 chr1 61436174 61436472 -181227881 - AluSq SINE Alu -15 298 1 444 232 48 24 chr1 61436553 61436678 -181227675 - L2 LINE L2 -4 3309 3182 1789 117 48 31 chr1 61436846 61437137 -181227216 - AluSq SINE Alu -17 296 1 14040 113 46 75 chr1 61437207 61439187 -181225166 + Tigger1 DNA MER2_type 20 2002 -416 476 200 0 0 chr1 61439187 61439272 -181225081 - FLAM_A SINE Alu -57 85 1 14040 113 46 75 chr1 61439272 61439678 -181224675 + Tigger1 DNA MER2_type 2002 2418 0 273 269 115 10 chr1 61439794 61439909 -181224444 + MIR SINE MIR 2 130 -78 230 173 115 0 chr1 61440034 61440086 -181224267 + MIR SINE MIR 205 262 0 450 324 69 0 chr1 61440510 61440714 -181223639 + MIR SINE MIR 1 218 -44 197 297 139 30 chr1 61440950 61441051 -181223302 + MIR SINE MIR 40 151 -57 676 285 11 11 chr1 61441233 61441419 -181222934 - MIR SINE MIR -8 254 69 1237 109 113 8 chr1 61441621 61441887 -181222466 + AluSx SINE Alu 1 294 -18 1453 121 0 0 chr1 61442035 61442225 -181222128 + AluSq SINE Alu 110 299 -14 1753 153 11 11 chr1 61442325 61442599 -181221754 - AluJo SINE Alu -24 288 15 189 0 0 0 chr1 61442715 61442736 -181221617 + (T)n Simple_repeat Simple_repeat 1 21 0 2162 169 59 53 chr1 61442966 61443440 -181220913 + MLT1D LTR MaLR 1 477 -28 267 328 33 8 chr1 61443490 61443612 -181220741 - MIR SINE MIR -61 147 23 471 201 190 63 chr1 61443673 61443847 -181220506 + MER117 DNA MER1_type 1 196 -1 388 287 10 0 chr1 61443847 61443948 -181220405 - MIR3 SINE MIR -47 161 60 235 342 75 6 chr1 61444962 61445123 -181219230 - MIR SINE MIR -50 212 41 376 255 143 25 chr1 61445367 61445528 -181218825 - MIR SINE MIR -30 232 53 213 290 28 37 chr1 61446477 61446584 -181217769 - MIR SINE MIR -46 216 111 805 196 0 0 chr1 61446695 61446833 -181217520 - FRAM SINE Alu -39 137 1 506 223 141 0 chr1 61447097 61447218 -181217135 + LTR33 LTR ERVL 370 507 -14 304 125 21 0 chr1 61447915 61447963 -181216390 - MLT2C2 LTR ERVL 0 414 366 247 188 14 14 chr1 61448025 61448094 -181216259 + (TA)n Simple_repeat Simple_repeat 2 70 0 2223 178 19 22 chr1 61448126 61448543 -181215810 - MLT2C2 LTR ERVL -48 416 1 446 267 0 37 chr1 61448562 61448697 -181215656 + MLT1H LTR MaLR 45 174 -375 584 212 36 22 chr1 61448802 61448939 -181215414 + MLT1G LTR MaLR 450 588 -2 195 260 0 20 chr1 61449370 61449420 -181214933 - L2 LINE L2 -220 3052 3004 2037 124 38 0 chr1 61449475 61449765 -181214588 - AluSq SINE Alu -12 301 1 392 256 76 43 chr1 61450186 61450397 -181213956 + MIR SINE MIR 26 243 -19 1802 161 17 7 chr1 61450603 61450894 -181213459 - AluJo SINE Alu -16 296 3 385 369 28 0 chr1 61450896 61451072 -181213281 + MIR SINE MIR 48 228 -34 17243 67 3 1 chr1 61451470 61453713 -181210640 + L1PA6 LINE L1 3012 5257 -889 5750 51 55 5 chr1 61453717 61454458 -181209895 + L1PA6 LINE L1 5377 6154 0 2572 78 0 14 chr1 61454458 61454795 -181209558 + L1PA6 LINE L1 5814 6154 0 469 286 23 23 chr1 61455293 61455464 -181208889 + MLT1J1 LTR MaLR 1 171 -275 304 244 250 24 chr1 61455475 61455602 -181208751 + MLT1J2 LTR MaLR 204 301 -149 2158 144 0 0 chr1 61455602 61455914 -181208439 - AluSx SINE Alu 0 312 1 304 244 250 24 chr1 61455914 61455954 -181208399 + MLT1J2 LTR MaLR 301 409 -41 422 357 21 21 chr1 61456529 61456854 -181207499 - L2 LINE L2 -744 2570 2246 335 372 8 8 chr1 61458025 61458154 -181206199 - L2 LINE L2 -5 3267 3139 410 268 16 8 chr1 61458600 61458723 -181205630 - MIR SINE MIR -66 142 19 572 260 101 18 chr1 61459268 61459495 -181204858 - MIR SINE MIR 0 262 17 985 298 67 56 chr1 61459606 61460174 -181204179 - MLT1K LTR MaLR 0 588 15 342 210 49 0 chr1 61460436 61460517 -181203836 + MIR SINE MIR 107 191 -71 892 287 68 22 chr1 61460792 61461147 -181203206 - LTR33 LTR ERVL -20 501 131 865 252 33 0 chr1 61461565 61461775 -181202578 + MIR SINE MIR 40 256 -6 371 311 22 7 chr1 61461795 61461930 -181202423 + MIR3 SINE MIR 18 154 -54 323 319 135 0 chr1 61462601 61462764 -181201589 + L2 LINE L2 2870 3054 -218 244 260 27 0 chr1 61462819 61462892 -181201461 + L2 LINE L2 3155 3229 -43 642 314 71 68 chr1 61463064 61463508 -181200845 + L2 LINE L2 2825 3272 0 554 309 20 24 chr1 61463627 61463873 -181200480 + MLT1L LTR MaLR 74 318 -297 971 308 83 20 chr1 61464222 61464728 -181199625 + MLT1L LTR MaLR 74 611 -4 247 313 0 0 chr1 61464739 61464803 -181199550 + MIR SINE MIR 84 147 -115 2075 139 42 33 chr1 61465153 61465513 -181198840 + THE1B LTR MaLR 2 364 0 455 284 118 35 chr1 61465547 61465875 -181198478 - L1MC4a LINE L1 -238 5883 5580 286 224 174 20 chr1 61466085 61466183 -181198170 - MIR SINE MIR -66 142 30 224 59 29 0 chr1 61466339 61466373 -181197980 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 206 344 121 25 chr1 61466440 61466838 -181197515 + L3 LINE CR1 1031 1466 -111 * 377 252 131 59 chr1 61466806 61467028 -181197325 + L2 LINE L2 2720 2957 -357 425 277 59 0 chr1 61467105 61467224 -181197129 - MIR SINE MIR -11 251 126 1408 247 66 10 chr1 61467228 61467620 -181196733 - LTR16A LTR ERVL -4 446 33 269 273 10 71 chr1 61467651 61467750 -181196603 - MIR SINE MIR -135 127 35 243 250 77 0 chr1 61467766 61467818 -181196535 + MIR SINE MIR 207 262 0 * 368 324 9 9 chr1 61467817 61467925 -181196428 - MIR SINE MIR -105 157 50 250 277 223 0 chr1 61467946 61468040 -181196313 + L2 LINE L2 3195 3309 -4 21 0 0 0 chr1 61468047 61468068 -181196285 + AT_rich Low_complexity Low_complexity 1 21 0 500 274 52 20 chr1 61468134 61468287 -181196066 - MIR3 SINE MIR -35 173 16 388 236 0 47 chr1 61468330 61468436 -181195917 - MER5A DNA MER1_type -85 104 4 755 222 77 36 chr1 61468783 61469004 -181195349 + MIR SINE MIR 33 262 0 264 300 20 0 chr1 61469162 61469262 -181195091 + L2 LINE L2 2435 2536 -778 270 309 134 13 chr1 61469367 61469516 -181194837 - MIR SINE MIR -92 170 4 488 299 96 62 chr1 61469798 61469990 -181194363 + L2 LINE L2 2499 2710 -604 2194 96 3 0 chr1 61469990 61470292 -181194061 - AluSx SINE Alu -9 303 1 488 299 96 62 chr1 61470292 61470454 -181193899 + L2 LINE L2 2710 2865 -449 361 315 99 47 chr1 61470922 61471154 -181193199 + MIR SINE MIR 13 256 -6 195 235 20 20 chr1 61471158 61471209 -181193144 + MIR SINE MIR 125 175 -87 219 304 0 0 chr1 61471735 61471791 -181192562 + (TG)n Simple_repeat Simple_repeat 2 57 0 277 277 80 44 chr1 61471844 61471981 -181192372 - L2 LINE L2 -5 3267 3126 291 330 65 32 chr1 61472075 61472260 -181192093 - MIR3 SINE MIR -12 196 6 477 228 184 0 chr1 61472415 61472529 -181191824 + L2 LINE L2 3179 3313 0 2295 109 44 22 chr1 61472698 61473065 -181191288 - THE1C LTR MaLR 0 375 1 380 271 16 23 chr1 61473471 61473600 -181190753 + MIR SINE MIR 110 237 -25 1737 175 23 10 chr1 61473654 61473962 -181190391 - MLT1B LTR MaLR -1 389 78 754 222 11 53 chr1 61473959 61474148 -181190205 - MER58A DNA MER1_type -40 184 4 * 288 300 71 6 chr1 61474298 61474439 -181189914 + MIR SINE MIR 23 171 -69 2179 98 3 0 chr1 61474478 61474774 -181189579 - AluSx SINE Alu -15 297 1 216 158 0 0 chr1 61475335 61475373 -181188980 + (TG)n Simple_repeat Simple_repeat 1 38 0 411 248 159 0 chr1 61475476 61475621 -181188732 - MIR SINE MIR -21 241 74 699 241 114 18 chr1 61475952 61476180 -181188173 - MIR SINE MIR -12 250 1 196 228 239 22 chr1 61476180 61476258 -181188095 + L2 LINE L2 3121 3218 -95 216 333 94 17 chr1 61476267 61476384 -181187969 + MIR SINE MIR 17 142 -66 266 315 48 32 chr1 61477160 61477288 -181187065 + MIR SINE MIR 30 157 -51 184 309 36 0 chr1 61478331 61478386 -181185967 + MIR SINE MIR 2 58 -204 460 361 20 24 chr1 61478885 61479134 -181185219 - MIR SINE MIR -13 249 2 237 83 0 0 chr1 61479405 61479441 -181184912 + (TG)n Simple_repeat Simple_repeat 2 37 0 1045 213 22 96 chr1 61479877 61480149 -181184204 + MIR SINE MIR 3 254 -8 1325 183 0 17 chr1 61480521 61480762 -181183591 - AluJo SINE Alu -75 237 1 458 294 71 31 chr1 61480776 61481099 -181183254 - L1MC5 LINE L1 -82 7879 7544 216 186 0 23 chr1 61481616 61481659 -181182694 + GA-rich Low_complexity Low_complexity 1 42 0 283 185 56 0 chr1 61482464 61482518 -181181835 + MARNA DNA Mariner 303 359 -227 748 327 19 12 chr1 61482768 61482954 -181181399 - MIR SINE MIR -1 261 71 1826 118 64 0 chr1 61482954 61483234 -181181119 + AluSg SINE Alu 2 299 -11 748 327 19 12 chr1 61483234 61483304 -181181049 - MIR SINE MIR -191 71 3 244 264 19 0 chr1 61483797 61483850 -181180503 + MLT1I LTR MaLR 233 286 -123 362 160 39 143 chr1 61483890 61484033 -181180320 + MLT1H LTR MaLR 411 501 -4 2028 131 3 7 chr1 61484206 61484511 -181179842 + AluSx SINE Alu 1 304 -8 243 262 84 28 chr1 61484558 61484665 -181179688 + L1ME LINE L1 5697 5809 -312 684 271 143 33 chr1 61484665 61484994 -181179359 - MLT1J LTR MaLR -4 507 143 334 174 12 12 chr1 61486013 61486099 -181178254 + GA-rich Low_complexity Low_complexity 1 86 0 2257 88 0 0 chr1 61486269 61486564 -181177789 + AluSg SINE Alu 3 297 -13 223 296 96 24 chr1 61486572 61486697 -181177656 + L2 LINE L2 3160 3293 -20 433 153 288 0 chr1 61487018 61487136 -181177217 - MER5A DNA MER1_type -34 155 4 392 273 93 44 chr1 61487150 61487333 -181177020 - MIR SINE MIR -66 196 5 237 175 95 32 chr1 61487711 61487774 -181176579 - MIR SINE MIR -78 184 118 392 271 68 23 chr1 61487897 61488030 -181176323 + MIR SINE MIR 18 156 -106 2599 231 75 3 chr1 61488050 61488639 -181175714 - MER82 DNA MER2_type -9 644 14 439 208 19 138 chr1 61488827 61488986 -181175367 + MIR SINE MIR 87 226 -36 288 153 153 17 chr1 61488990 61489049 -181175304 + MER96 DNA MER1_type? 1 67 -108 1949 118 20 13 chr1 61489082 61489387 -181174966 + AluSq SINE Alu 1 307 -6 209 118 0 0 chr1 61489586 61489620 -181174733 + MIR SINE MIR 110 143 -65 203 214 0 0 chr1 61489670 61489712 -181174641 + MIR SINE MIR 156 197 -65 696 316 42 5 chr1 61490058 61490270 -181174083 - MIR SINE MIR -11 251 32 781 219 10 41 chr1 61490351 61490547 -181173806 + MIR SINE MIR 73 262 0 360 0 0 0 chr1 61491042 61491082 -181173271 + (TG)n Simple_repeat Simple_repeat 1 40 0 197 309 36 45 chr1 61491606 61491716 -181172637 - MIR3 SINE MIR -15 193 85 1118 241 32 35 chr1 61492928 61493334 -181171019 - LTR16B LTR ERVL -2 462 58 459 294 14 20 chr1 61494259 61494405 -181169948 - MIR3 SINE MIR -26 182 38 2308 93 0 0 chr1 61494554 61494855 -181169498 - AluSx SINE Alu -10 302 2 401 300 94 22 chr1 61494931 61495111 -181169242 + MIR SINE MIR 14 206 -56 243 207 171 0 chr1 61495182 61495264 -181169089 + MIR SINE MIR 167 262 0 269 215 60 74 chr1 61495482 61495590 -181168763 - MIR SINE MIR -88 174 65 260 305 70 39 chr1 61495912 61496040 -181168313 - MIR SINE MIR -41 221 90 749 209 5 42 chr1 61496047 61496238 -181168115 - LTR41 LTR ERVL -6 767 584 899 193 28 11 chr1 61496560 61496736 -181167617 - LTR41 LTR ERVL -594 179 1 1978 133 79 17 chr1 61496810 61497163 -181167190 + THE1C LTR MaLR 1 375 0 732 240 83 0 chr1 61497175 61497392 -181166961 + Cheshire DNA MER1_type 161 395 -2025 304 330 46 0 chr1 61497422 61497531 -181166822 + MIR SINE MIR 105 218 -44 335 354 39 39 chr1 61497582 61497760 -181166593 - MIR3 SINE MIR -27 181 4 258 354 46 30 chr1 61498184 61498421 -181165932 + L2 LINE L2 2152 2392 -922 503 320 72 85 chr1 61498459 61498959 -181165394 + L2 LINE L2 2779 3271 -1 450 358 62 29 chr1 61498972 61499358 -181164995 + L2 LINE L2 2457 2855 -459 398 219 0 0 chr1 61499356 61499429 -181164924 + L2 LINE L2 3186 3258 -55 * 829 240 116 88 chr1 61499429 61499870 -181164483 - MLT1H LTR MaLR 0 549 97 278 200 18 0 chr1 61499940 61499995 -181164358 + L2 LINE L2 3254 3309 -4 252 59 0 0 chr1 61501095 61501129 -181163224 + (TG)n Simple_repeat Simple_repeat 2 35 0 2582 96 8 8 chr1 61501192 61501547 -181162806 + THE1A LTR MaLR 1 355 0 12237 82 1 14 chr1 61501547 61503020 -181161333 + THE1A-int LTR MaLR 1 1454 -126 2007 134 0 0 chr1 61503020 61503312 -181161041 - AluSx SINE Alu -10 302 11 12237 82 1 14 chr1 61503312 61503438 -181160915 + THE1A-int LTR MaLR 1454 1580 0 2574 96 8 3 chr1 61503438 61503791 -181160562 + THE1A LTR MaLR 1 355 0 464 301 100 5 chr1 61504160 61504275 -181160078 - MIR SINE MIR -9 253 150 2607 89 19 11 chr1 61504275 61504647 -181159706 - THE1C LTR MaLR 0 375 1 464 301 100 5 chr1 61504647 61504750 -181159603 - MIR SINE MIR -112 150 14 372 348 59 7 chr1 61504744 61504879 -181159474 - MIR3 SINE MIR -61 147 6 * 196 184 0 26 chr1 61505194 61505232 -181159121 - MIR SINE MIR -149 59 23 368 263 44 35 chr1 61505302 61505416 -181158937 - MIR SINE MIR -21 241 127 322 271 51 2 chr1 61505577 61505751 -181158602 - MLT1L LTR MaLR -4 611 389 1488 206 3 0 chr1 61505797 61506084 -181158269 - AluJo SINE Alu -24 288 1 297 246 0 0 chr1 61506205 61506274 -181158079 - MLT1J LTR MaLR -333 178 110 204 125 0 0 chr1 61506300 61506332 -181158021 + (TG)n Simple_repeat Simple_repeat 2 33 0 232 132 53 0 chr1 61506357 61506395 -181157958 - MLT1L LTR MaLR -569 46 7 215 393 57 7 chr1 61507531 61507671 -181156682 - MIR SINE MIR -103 159 13 202 359 57 9 chr1 61507863 61507969 -181156384 - L2 LINE L2 -8 3264 3154 231 315 70 49 chr1 61508047 61508190 -181156163 + MER5B DNA MER1_type 29 174 -4 573 238 50 0 chr1 61508330 61508490 -181155863 - ORSL DNA AcHobo -8 267 100 229 216 108 85 chr1 61508463 61508639 -181155714 - ORSL DNA AcHobo -70 205 26 * 755 221 99 99 chr1 61509265 61509658 -181154695 - MLT1J2 LTR MaLR 0 450 58 352 159 145 0 chr1 61509870 61509939 -181154414 - MER116 DNA Mariner 0 80 2 266 192 20 146 chr1 61509988 61510139 -181154214 - MER103 DNA DNA -14 152 21 233 347 13 0 chr1 61510378 61510453 -181153900 + MIR3 SINE MIR 87 162 -46 436 295 33 8 chr1 61511311 61511433 -181152920 + MIR SINE MIR 26 150 -112 230 250 21 14 chr1 61511633 61511713 -181152640 + MIR SINE MIR 44 128 -80 856 163 0 0 chr1 61511713 61511854 -181152499 + AluSg/x SINE Alu 163 303 -7 291 324 72 1 chr1 61511990 61512157 -181152196 + MIR SINE MIR 20 193 -69 407 264 58 8 chr1 61512206 61512327 -181152026 + L2 LINE L2 3146 3272 0 239 338 96 35 chr1 61512960 61513139 -181151214 - MIR3 SINE MIR -66 142 15 235 233 55 27 chr1 61513189 61513262 -181151091 + L2 LINE L2 3223 3297 -16 432 375 17 25 chr1 61513307 61513542 -181150811 + MIR SINE MIR 22 254 -8 233 143 0 0 chr1 61514009 61514051 -181150302 - MIR SINE MIR -109 153 112 186 340 0 0 chr1 61514050 61514100 -181150253 - L2 LINE L2 -13 3259 3210 * 274 309 0 0 chr1 61514125 61514206 -181150147 - MIR SINE MIR -68 140 60 2269 117 0 3 chr1 61514232 61514541 -181149812 - AluSg SINE Alu -2 308 1 281 250 25 0 chr1 61514822 61514902 -181149451 - MLT1J LTR MaLR -366 145 64 466 284 8 0 chr1 61515316 61515450 -181148903 + L1MC4a LINE L1 5768 5902 -1906 212 276 26 13 chr1 61515701 61515777 -181148576 + MIR SINE MIR 78 154 -108 22 56 0 0 chr1 61515780 61515816 -181148537 + AT_rich Low_complexity Low_complexity 1 36 0 221 350 115 6 chr1 61516243 61516400 -181147953 - MIR3 SINE MIR -14 194 21 182 61 0 61 chr1 61516722 61516755 -181147598 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 409 289 62 29 chr1 61516871 61517113 -181147240 + MIR SINE MIR 7 256 -6 2002 208 43 9 chr1 61517510 61517952 -181146401 + MLT1C LTR MaLR 1 457 -10 214 254 0 0 chr1 61518087 61518146 -181146207 - MIR SINE MIR -84 124 66 462 289 38 13 chr1 61518368 61518527 -181145826 - MIR SINE MIR -50 212 50 1826 159 0 10 chr1 61518569 61518859 -181145494 - AluSx SINE Alu -9 303 17 1304 273 50 51 chr1 61518891 61519021 -181145332 + L1ME3A LINE L1 5248 5377 -793 1720 191 0 28 chr1 61519021 61519341 -181145012 + AluJb SINE Alu 1 311 -1 1304 273 50 51 chr1 61519341 61519551 -181144802 + L1ME3A LINE L1 5377 5586 -584 1703 175 60 11 chr1 61519551 61519899 -181144454 + MLT1A1 LTR MaLR 1 365 0 1304 273 50 51 chr1 61519899 61520044 -181144309 + L1ME3A LINE L1 5586 5730 -440 732 180 0 8 chr1 61520044 61520172 -181144181 - FLAM_A SINE Alu -5 128 2 1304 273 50 51 chr1 61520172 61520331 -181144022 + L1ME3A LINE L1 5730 5892 -278 406 259 97 23 chr1 61520353 61520569 -181143784 + L1ME3A LINE L1 5731 5962 -208 192 232 98 12 chr1 61520934 61521016 -181143337 - L2 LINE L2 -530 2784 2696 193 247 0 82 chr1 61521634 61521707 -181142646 - MIR SINE MIR -123 85 19 209 197 98 16 chr1 61522082 61522143 -181142210 + L3b LINE CR1 1260 1325 -258 209 262 0 0 chr1 61524035 61524077 -181140276 + (CTG)n Simple_repeat Simple_repeat 3 44 0 452 315 50 25 chr1 61524635 61524876 -181139477 - MIR SINE MIR -14 248 2 1602 216 3 44 chr1 61524970 61525332 -181139021 + MLT1A2 LTR MaLR 28 374 0 338 333 99 0 chr1 61529191 61529353 -181135000 - L3 LINE CR1 -221 1356 1179 334 314 89 0 chr1 61529383 61529507 -181134846 + L3 LINE CR1 955 1089 -488 1984 133 4 0 chr1 61529674 61529976 -181134377 + AluJb SINE Alu 5 307 0 317 318 36 0 chr1 61530201 61530311 -181134042 + MIR3 SINE MIR 61 174 -34 277 307 45 0 chr1 61530342 61530430 -181133923 + MER117 DNA MER1_type 59 150 -47 1997 140 62 36 chr1 61530435 61530791 -181133562 + MSTA LTR MaLR 1 365 -63 329 250 37 74 chr1 61531983 61532091 -181132262 - MLT1K LTR MaLR -326 262 159 399 248 23 98 chr1 61532104 61532237 -181132116 - MLT1K LTR MaLR -367 221 99 213 148 114 102 chr1 61532561 61532649 -181131704 + MIR3 SINE MIR 104 192 -16 275 214 112 10 chr1 61534207 61534305 -181130048 + MIR SINE MIR 70 177 -85 219 229 0 0 chr1 61534824 61534872 -181129481 - L2 LINE L2 -82 3231 3184 387 200 0 0 chr1 61534924 61534989 -181129364 - 7SK RNA RNA -8 185 121 717 151 27 34 chr1 61535008 61535154 -181129199 - 7SK RNA RNA -48 145 1 21 0 0 0 chr1 61535165 61535186 -181129167 + AT_rich Low_complexity Low_complexity 1 21 0 217 257 0 78 chr1 61535256 61535390 -181128963 - L2 LINE L2 -277 3036 2921 583 227 55 6 chr1 61536511 61536674 -181127679 + L1ME4a LINE L1 5951 6121 0 560 297 47 33 chr1 61537579 61537879 -181126474 + L2 LINE L2 2805 3108 -205 731 201 120 11 chr1 61537961 61538145 -181126208 - MER58C DNA MER1_type -1 214 11 229 293 167 17 chr1 61538166 61538340 -181126013 + L2 LINE L2 3103 3302 -11 192 77 0 0 chr1 61538341 61538367 -181125986 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 345 287 111 32 chr1 61538367 61538583 -181125770 + MIR SINE MIR 24 256 -6 194 133 44 0 chr1 61539097 61539142 -181125211 - MIR3 SINE MIR -1 207 161 184 300 77 29 chr1 61539326 61539496 -181124857 + L2 LINE L2 2708 2885 -429 647 261 62 22 chr1 61539643 61539869 -181124484 - MIR SINE MIR -3 259 25 195 349 0 0 chr1 61540491 61540574 -181123779 + L2 LINE L2 2733 2815 -499 594 202 0 0 chr1 61541446 61541619 -181122734 + (TG)n Simple_repeat Simple_repeat 2 174 0 183 216 26 103 chr1 61541653 61541769 -181122584 + L2 LINE L2 2987 3093 -179 2006 163 32 3 chr1 61542105 61542443 -181121910 - MER7A DNA MER2_type 0 346 1 275 301 0 0 chr1 61542703 61542786 -181121567 - MIR SINE MIR -93 115 33 390 216 31 10 chr1 61543434 61543531 -181120822 + MIR SINE MIR 20 118 -144 272 301 10 39 chr1 61543737 61543840 -181120513 + MIR SINE MIR 40 139 -69 396 218 16 8 chr1 61543900 61544024 -181120329 + CT-rich Low_complexity Low_complexity 1 125 0 951 267 104 16 chr1 61544046 61544488 -181119865 - L2 LINE L2 -22 3291 2811 27 29 0 0 chr1 61544529 61544563 -181119790 + AT_rich Low_complexity Low_complexity 1 34 0 223 179 18 36 chr1 61544733 61544789 -181119564 - L2 LINE L2 -570 2744 2690 1372 268 27 87 chr1 61545766 61545814 -181118539 - L1MEc LINE L1 -3941 2455 2406 1446 194 60 54 chr1 61545814 61545883 -181118470 - MLT1B LTR MaLR 0 390 323 2108 103 10 20 chr1 61545883 61546183 -181118170 - AluSx SINE Alu -15 297 1 1446 194 60 54 chr1 61546183 61546499 -181117854 - MLT1B LTR MaLR -67 323 3 1372 268 27 87 chr1 61546499 61547453 -181116900 - L1MEc LINE L1 -3990 2406 1513 1255 184 53 110 chr1 61547468 61547664 -181116689 - Charlie1 DNA MER1_type -127 2634 2428 1710 122 0 4 chr1 61547664 61547901 -181116452 - AluSg/x SINE Alu -5 305 70 1255 184 53 110 chr1 61547901 61548193 -181116160 - Charlie1 DNA MER1_type -333 2428 2174 10873 204 31 63 chr1 61548209 61552815 -181111538 - L1PB3 LINE L1 0 6390 1532 2196 159 8 24 chr1 61552815 61552860 -181111493 + MER47A DNA MER2_type 1 45 -2278 2241 102 0 3 chr1 61552860 61553163 -181111190 - AluY SINE Alu -9 302 1 2196 159 8 24 chr1 61553163 61553487 -181110866 + MER47A DNA MER2_type 45 364 -2 10873 204 31 63 chr1 61553487 61554216 -181110137 - L1PB3 LINE L1 -4858 1532 781 805 201 101 0 chr1 61554407 61554596 -181109757 - MER3 DNA MER1_type 0 209 2 670 310 37 52 chr1 61554830 61555237 -181109116 - L1MEc LINE L1 -5969 427 27 322 319 128 58 chr1 61555621 61556198 -181108155 + L2 LINE L2 2628 3245 -27 1075 257 145 11 chr1 61556211 61556816 -181107537 - L2 LINE L2 0 3313 2616 654 162 0 0 chr1 61556816 61556915 -181107438 + U6 snRNA snRNA 1 99 -8 603 0 0 0 chr1 61556915 61556982 -181107371 + (TA)n Simple_repeat Simple_repeat 1 67 0 306 224 0 0 chr1 61556983 61557059 -181107294 - L2 LINE L2 -685 2629 2554 204 304 72 14 chr1 61557113 61557182 -181107171 + L2 LINE L2 3142 3214 -58 454 242 8 23 chr1 61557310 61557438 -181106915 - MIR SINE MIR -109 153 28 257 248 148 20 chr1 61558024 61558125 -181106228 + MIR3 SINE MIR 88 201 -7 532 205 175 6 chr1 61558269 61558441 -181105912 + MIR SINE MIR 61 254 -8 251 221 0 13 chr1 61558471 61558548 -181105805 + CT-rich Low_complexity Low_complexity 4 79 0 210 186 198 47 chr1 61558654 61558740 -181105613 + L2 LINE L2 3172 3270 -2 182 150 0 25 chr1 61559393 61559433 -181104920 - MIR SINE MIR -108 154 116 487 286 120 63 chr1 61559502 61559869 -181104484 - L2 LINE L2 0 3272 2885 412 232 71 0 chr1 61559882 61559994 -181104359 - MIR SINE MIR -56 206 87 181 341 0 24 chr1 61560352 61560437 -181103916 + L2 LINE L2 3003 3085 -187 212 339 58 16 chr1 61560497 61560618 -181103735 + L2 LINE L2 3100 3225 -47 233 290 14 0 chr1 61560996 61561065 -181103288 - L2 LINE L2 -3 3269 3200 194 239 65 0 chr1 61561343 61561389 -181102964 - L2 LINE L2 -27 3245 3197 4104 154 62 11 chr1 61562448 61563170 -181101183 - L1MC2 LINE L1 -13 6331 5573 550 209 28 93 chr1 61563170 61563297 -181101056 + MIR SINE MIR 20 154 -108 2775 87 22 11 chr1 61563297 61563666 -181100687 - THE1C LTR MaLR -2 373 1 550 209 28 93 chr1 61563666 61563698 -181100655 + MIR SINE MIR 154 168 -94 2510 124 25 3 chr1 61563698 61564054 -181100299 - THE1B LTR MaLR 0 364 1 550 209 28 93 chr1 61564054 61564075 -181100278 + MIR SINE MIR 168 189 -73 1410 247 39 12 chr1 61564115 61564547 -181099806 + MLT1C LTR MaLR 6 467 0 293 286 101 109 chr1 61564588 61564826 -181099527 + L2 LINE L2 3035 3270 -2 2254 313 70 43 chr1 61566113 61567204 -181097149 + ERVL LTR ERVL 1792 2852 -2912 1225 197 23 9 chr1 61567204 61567422 -181096931 - MER58A DNA MER1_type -3 221 1 2254 313 70 43 chr1 61567422 61567513 -181096840 + ERVL LTR ERVL 2852 2939 -2825 1575 213 44 22 chr1 61567513 61567879 -181096474 - MLT1A2 LTR MaLR 0 374 1 2254 313 70 43 chr1 61567879 61568101 -181096252 + ERVL LTR ERVL 2939 3235 -2529 318 305 59 8 chr1 61568135 61568253 -181096100 - HERV16 LTR ERVL -3820 1176 1053 549 279 25 20 chr1 61568594 61568795 -181095558 - LTR16C LTR ERVL -2 489 288 549 369 43 8 chr1 61569491 61569862 -181094491 + ERVL LTR ERVL 4937 5320 -444 891 139 13 25 chr1 61569935 61570093 -181094260 - L1PA13 LINE L1 0 6163 6008 711 199 73 0 chr1 61570312 61570463 -181093890 + MER93b LTR ERV1 1 162 -211 720 147 0 0 chr1 61570514 61570623 -181093730 + MER93b LTR ERV1 265 373 0 1802 174 40 62 chr1 61570649 61571103 -181093250 - MER31B LTR ERV1 -22 444 1 183 293 0 0 chr1 61572215 61572256 -181092097 - L2 LINE L2 -8 3305 3265 212 347 137 0 chr1 61572349 61572444 -181091909 - L2 LINE L2 -18 3254 3147 480 150 62 0 chr1 61572444 61572524 -181091829 + MSTD LTR MaLR 1 85 -343 262 87 65 0 chr1 61572536 61572582 -181091771 - L1PB1 LINE L1 -9 6142 6094 6416 137 9 4 chr1 61572603 61574270 -181090083 - L1PB1 LINE L1 -36 6115 4442 1231 201 128 17 chr1 61574270 61574568 -181089785 + MSTD LTR MaLR 66 396 0 305 289 18 133 chr1 61574609 61574679 -181089674 - L2 LINE L2 -189 3083 3007 1655 212 0 3 chr1 61574679 61574990 -181089363 - AluJb SINE Alu -2 310 1 305 289 18 133 chr1 61574990 61575137 -181089216 - L2 LINE L2 -265 3007 2891 477 272 33 70 chr1 61575154 61575252 -181089101 - L2 LINE L2 -5 3308 3208 2140 141 113 14 chr1 61575252 61575607 -181088746 - MLT1B LTR MaLR 0 390 1 477 272 33 70 chr1 61575607 61575721 -181088632 - L2 LINE L2 -105 3208 3104 1024 186 6 0 chr1 61575741 61575918 -181088435 + FRAM SINE Alu 1 175 -1 222 381 40 8 chr1 61575923 61576049 -181088304 - L2 LINE L2 -3 3269 3140 359 298 38 23 chr1 61576669 61576800 -181087553 - MER5A DNA MER1_type -1 188 56 276 30 0 0 chr1 61577140 61577173 -181087180 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 88 0 0 chr1 61577275 61577309 -181087044 - L2 LINE L2 -17 3255 3222 702 249 88 10 chr1 61577310 61577495 -181086858 - LTR16C LTR ERVL -11 480 281 396 272 68 0 chr1 61577495 61577598 -181086755 + MER81 DNA DNA 1 110 -4 286 200 12 88 chr1 61577648 61577728 -181086625 - LTR16C LTR ERVL -228 263 190 555 308 22 16 chr1 61577990 61578175 -181086178 + MIR3 SINE MIR 23 208 0 189 0 0 0 chr1 61578376 61578397 -181085956 + (T)n Simple_repeat Simple_repeat 1 21 0 212 189 0 0 chr1 61578784 61578821 -181085532 + (TAA)n Simple_repeat Simple_repeat 2 38 0 207 337 89 50 chr1 61578874 61578975 -181085378 - MIR SINE MIR -148 114 10 556 94 13 56 chr1 61579508 61579624 -181084729 - MER39B LTR ERV1 -543 110 7 326 297 79 21 chr1 61579846 61579956 -181084397 + MIR SINE MIR 7 123 -85 934 260 118 50 chr1 61580360 61580776 -181083577 + MLT1J1 LTR MaLR 3 446 0 332 244 0 13 chr1 61581629 61581707 -181082646 - HsTC2 DNA Tc2 -1819 79 3 3372 196 11 11 chr1 61582212 61582844 -181081509 + MER39 LTR ERV1 75 706 -1 267 308 135 27 chr1 61582850 61583035 -181081318 - MIR SINE MIR -45 217 13 296 244 0 70 chr1 61583040 61583126 -181081227 + L3 LINE CR1 1177 1256 -321 338 253 74 0 chr1 61583250 61583345 -181081008 + MIR SINE MIR 151 252 -10 424 303 34 17 chr1 61583514 61583633 -181080720 - L2 LINE L2 -5 3267 3147 188 111 28 0 chr1 61584090 61584126 -181080227 + C-rich Low_complexity Low_complexity 1 37 0 404 258 67 8 chr1 61584275 61584395 -181079958 + MIR SINE MIR 130 256 -6 406 194 48 19 chr1 61584478 61584581 -181079772 + MIR SINE MIR 114 219 -43 252 331 24 39 chr1 61586738 61586865 -181077488 + L2 LINE L2 2911 3035 -237 451 366 42 52 chr1 61586986 61587292 -181077061 + L2 LINE L2 2951 3253 -19 207 0 0 0 chr1 61587294 61587317 -181077036 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 254 280 67 13 chr1 61587317 61587392 -181076961 + MIR SINE MIR 44 122 -86 303 228 44 79 chr1 61587876 61587990 -181076363 + MIR SINE MIR 34 143 -119 13179 112 6 49 chr1 61588559 61591196 -181073157 + L1PA7 LINE L1 1 2627 -3834 913 115 40 14 chr1 61591196 61591335 -181073018 + L1PA7 LINE L1 3859 4004 -2457 22076 98 10 0 chr1 61591335 61595127 -181069226 + L1PA7 LINE L1 2625 6469 0 22 0 0 0 chr1 61595264 61595286 -181069067 + AT_rich Low_complexity Low_complexity 1 22 0 1019 329 32 30 chr1 61595410 61595975 -181068378 + ERVL LTR ERVL 4676 5241 -523 5164 156 11 5 chr1 61595982 61596843 -181067510 - L1PB4 LINE L1 -9 6147 5282 192 77 0 0 chr1 61597219 61597245 -181067108 + (TAA)n Simple_repeat Simple_repeat 2 27 0 241 307 31 99 chr1 61597250 61597442 -181066911 - MIR SINE MIR -10 252 74 2143 137 0 0 chr1 61597766 61598058 -181066295 - AluSx SINE Alu -20 292 1 1741 60 23 9 chr1 61598079 61598405 -181065948 + L1P3 LINE L1 5145 5474 -680 386 321 43 29 chr1 61598614 61598894 -181065459 + L1ME4a LINE L1 5502 5785 -336 534 265 47 19 chr1 61598938 61599153 -181065200 + L1ME4a LINE L1 5901 6121 0 23 97 0 0 chr1 61599265 61599337 -181065016 + AT_rich Low_complexity Low_complexity 1 72 0 292 304 35 26 chr1 61599369 61599484 -181064869 - MIR SINE MIR -63 145 30 2209 123 0 0 chr1 61599987 61600296 -181064057 - AluSg1 SINE Alu 0 309 1 362 319 9 17 chr1 61600424 61600540 -181063813 + L2 LINE L2 3155 3269 -3 425 207 0 0 chr1 61600621 61600708 -181063645 + MIR3 SINE MIR 110 196 -12 1611 224 121 13 chr1 61601258 61601759 -181062594 - MER39 LTR ERV1 0 707 1 251 229 29 0 chr1 61601859 61601929 -181062424 + LTR33 LTR ERVL 114 185 -336 590 231 98 30 chr1 61602008 61602211 -181062142 + LTR33 LTR ERVL 305 521 0 1943 216 99 5 chr1 61602440 61602865 -181061488 + MLT1C LTR MaLR 3 467 0 495 330 200 6 chr1 61602905 61603260 -181061093 + L2 LINE L2 2828 3251 -21 275 281 67 0 chr1 61603975 61604064 -181060289 - MIR SINE MIR -73 189 95 290 267 17 0 chr1 61604080 61604140 -181060213 - L2 LINE L2 -8 3264 3204 265 181 12 121 chr1 61604144 61604187 -181060166 - MADE1 DNA Mariner -6 74 43 2252 116 3 0 chr1 61604187 61604488 -181059865 + AluSx SINE Alu 1 302 -10 265 181 12 121 chr1 61604488 61604527 -181059826 - MADE1 DNA Mariner -37 43 1 253 315 36 27 chr1 61604808 61604919 -181059434 + MIR SINE MIR 39 150 -112 190 261 0 58 chr1 61605601 61605670 -181058683 + L2 LINE L2 3189 3253 -19 283 238 214 24 chr1 61606010 61606136 -181058217 + MIR SINE MIR 34 183 -79 1171 198 20 38 chr1 61606586 61606907 -181057446 + MLT1D LTR MaLR 161 505 0 433 208 13 0 chr1 61607297 61607374 -181056979 - Zaphod DNA AcHobo 0 4031 3954 950 252 133 3 chr1 61607474 61607796 -181056557 - Zaphod DNA AcHobo -75 3956 3593 2022 284 76 51 chr1 61607940 61608735 -181055618 + L1ME1 LINE L1 175 949 -5447 2438 73 0 0 chr1 61608735 61609038 -181055315 - AluY SINE Alu -8 303 1 2022 284 76 51 chr1 61609038 61609149 -181055204 + L1ME1 LINE L1 949 1056 -5340 1350 209 50 80 chr1 61609149 61609370 -181054983 - MLT1B LTR MaLR 0 390 185 2377 104 0 0 chr1 61609370 61609679 -181054674 - AluSx SINE Alu -3 309 1 1350 209 50 80 chr1 61609679 61609859 -181054494 - MLT1B LTR MaLR -205 185 1 2022 284 76 51 chr1 61609859 61610248 -181054105 + L1ME1 LINE L1 1056 1503 -4893 * 2247 228 28 26 chr1 61610239 61610940 -181053413 + L1MD3 LINE L1 7105 7985 0 3437 233 107 10 chr1 61610965 61612116 -181052237 + L1ME1 LINE L1 3564 4825 -1390 1970 160 66 8 chr1 61612116 61612497 -181051856 + MSTA LTR MaLR 1 403 -25 25 0 0 0 chr1 61612497 61612522 -181051831 + AT_rich Low_complexity Low_complexity 1 25 0 7586 50 0 5 chr1 61612514 61613451 -181050902 - L1PA5 LINE L1 -11 6143 5204 280 125 0 0 chr1 61613451 61613491 -181050862 + MSTA LTR MaLR 389 428 0 3476 213 60 49 chr1 61613491 61613869 -181050484 + L1ME1 LINE L1 4821 5193 -1042 2349 56 0 65 chr1 61613869 61614191 -181050162 + AluY SINE Alu 1 301 -10 3476 213 60 49 chr1 61614191 61614655 -181049698 + L1ME1 LINE L1 5193 5650 -585 3035 174 105 15 chr1 61614655 61615243 -181049110 - LTR9B LTR ERV1 -3 641 1 3476 213 60 49 chr1 61615243 61615805 -181048548 + L1ME1 LINE L1 5650 6231 -4 2024 219 124 65 chr1 61615823 61616230 -181048123 - Zaphod DNA AcHobo -1286 2745 2363 2157 123 0 3 chr1 61616230 61616530 -181047823 - AluSx SINE Alu -13 299 1 2024 219 124 65 chr1 61616530 61616726 -181047627 - Zaphod DNA AcHobo -1668 2363 2180 17964 49 0 2 chr1 61616726 61619618 -181044735 + L1PA5 LINE L1 3256 6150 -4 2024 219 124 65 chr1 61619618 61619825 -181044528 - Zaphod DNA AcHobo -1851 2180 1886 284 94 19 0 chr1 61619854 61619907 -181044446 + (TTTTA)n Simple_repeat Simple_repeat 3 56 0 668 168 0 0 chr1 61619920 61620015 -181044338 - AluJ/FLAM SINE Alu -216 96 2 2207 220 124 56 chr1 61620088 61620980 -181043373 - Zaphod DNA AcHobo -2885 1146 194 263 308 23 23 chr1 61621653 61621825 -181042528 + (TCTCTG)n Simple_repeat Simple_repeat 6 177 0 242 283 0 60 chr1 61621748 61621975 -181042378 + T-rich Low_complexity Low_complexity 1 213 0 * 308 297 43 60 chr1 61622531 61622716 -181041637 - L2 LINE L2 -193 3079 2898 570 300 21 103 chr1 61623026 61623337 -181041016 - L2 LINE L2 -4 3268 2992 859 216 62 6 chr1 61623337 61623513 -181040840 + MER5A DNA MER1_type 4 189 0 570 300 21 103 chr1 61623513 61623578 -181040775 - L2 LINE L2 -280 2992 2923 559 259 21 57 chr1 61623816 61624009 -181040344 + MER117 DNA MER1_type 1 186 -11 376 263 191 0 chr1 61624836 61624988 -181039365 + MIR SINE MIR 77 257 -5 239 313 38 46 chr1 61625298 61625429 -181038924 - L2 LINE L2 -495 2819 2690 * 309 339 9 27 chr1 61625425 61625537 -181038816 + L2 LINE L2 3189 3298 -15 192 40 0 0 chr1 61625539 61625564 -181038789 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 195 323 46 31 chr1 61625566 61625696 -181038657 - L2 LINE L2 -623 2691 2560 182 282 0 0 chr1 61626293 61626332 -181038021 - L2 LINE L2 -24 3289 3251 344 299 64 13 chr1 61626895 61627052 -181037301 + MIR SINE MIR 49 213 -49 22 0 0 0 chr1 61627846 61627868 -181036485 + AT_rich Low_complexity Low_complexity 1 22 0 2257 103 0 0 chr1 61627868 61628158 -181036195 - AluSq SINE Alu -23 290 1 755 296 18 0 chr1 61628757 61628977 -181035376 - ERVL LTR ERVL -389 5375 5152 * 2180 303 72 33 chr1 61628968 61630031 -181034322 - ERVL LTR ERVL -676 4978 3862 316 168 92 8 chr1 61630668 61630740 -181033613 + MIR SINE MIR 2 76 -133 250 269 48 58 chr1 61630986 61631090 -181033263 + L2 LINE L2 3155 3257 -15 180 217 60 60 chr1 61632227 61632310 -181032043 + MIR SINE MIR 100 182 -80 185 318 0 0 chr1 61632486 61632530 -181031823 - MIR SINE MIR -131 77 34 276 279 197 0 chr1 61633247 61633394 -181030959 - MIR SINE MIR -3 259 84 652 237 75 16 chr1 61633482 61633668 -181030685 - MIR SINE MIR -7 255 59 597 313 83 43 chr1 61634705 61635127 -181029226 + L2 LINE L2 2831 3269 -3 265 348 78 34 chr1 61635228 61635523 -181028830 - L2 LINE L2 -249 3023 2715 385 270 186 20 chr1 61635869 61636067 -181028286 - MIR SINE MIR -14 248 25 210 71 0 0 chr1 61636338 61636366 -181027987 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 390 299 65 42 chr1 61636521 61636738 -181027615 - L2 LINE L2 -197 3075 2854 3178 153 50 23 chr1 61636887 61637443 -181026910 + MER34C LTR ERV1 12 582 -3 210 336 47 34 chr1 61637479 61637628 -181026725 - L2 LINE L2 -676 2638 2488 862 167 60 51 chr1 61637631 61638159 -181026194 + LTR8 LTR ERV1 2 460 -267 987 331 113 21 chr1 61638159 61638929 -181025424 - L2 LINE L2 -865 2449 1609 345 377 89 0 chr1 61639388 61639534 -181024819 - L2 LINE L2 -7 3265 3107 194 304 70 51 chr1 61640149 61640307 -181024046 - L3b LINE CR1 -56 1527 1367 222 410 38 0 chr1 61641194 61641299 -181023054 + L2 LINE L2 2943 3051 -221 430 305 84 35 chr1 61641433 61641636 -181022717 - MIR SINE MIR -37 225 13 282 247 41 0 chr1 61642099 61642172 -181022181 + MIR SINE MIR 86 161 -101 791 89 0 0 chr1 61642217 61642318 -181022035 - HY3 scRNA scRNA 0 101 1 433 218 102 27 chr1 61642333 61642480 -181021873 + LTR33 LTR ERVL 43 200 -321 3317 152 12 11 chr1 61642656 61643222 -181021131 - Tigger1 DNA MER2_type -176 2242 1676 291 240 94 88 chr1 61644072 61644264 -181020089 - L1ME4a LINE L1 -2 6119 5927 896 250 120 61 chr1 61644902 61645135 -181019218 + MLT1F1 LTR MaLR 39 257 -310 2235 107 0 3 chr1 61645135 61645434 -181018919 - AluSq SINE Alu -15 298 1 896 250 120 61 chr1 61645434 61645627 -181018726 + MLT1F1 LTR MaLR 257 500 -67 4231 30 0 0 chr1 61645627 61646097 -181018256 + L1PA4 LINE L1 5686 6155 0 896 250 120 61 chr1 61646097 61646161 -181018192 + MLT1F1 LTR MaLR 500 559 -8 384 283 144 61 chr1 61646444 61646790 -181017563 - L1ME4a LINE L1 -196 5925 5551 335 234 13 0 chr1 61646803 61646880 -181017473 - L1P4 LINE L1 -697 5469 5392 471 301 22 13 chr1 61647135 61647326 -181017027 + MIR SINE MIR 11 198 -62 1891 115 97 0 chr1 61647327 61647605 -181016748 + AluSq SINE Alu 1 305 -8 258 282 82 47 chr1 61647759 61647929 -181016424 + L2 LINE L2 2593 2768 -546 337 273 51 79 chr1 61647959 61648175 -181016178 + L2 LINE L2 2852 3061 -211 1082 139 65 47 chr1 61648279 61648308 -181016045 - MER20 DNA MER1_type 0 219 192 923 233 11 0 chr1 61648308 61648484 -181015869 - MER45A DNA AcHobo 0 178 1 1082 139 65 47 chr1 61648484 61648669 -181015684 - MER20 DNA MER1_type -27 192 1 2250 159 31 34 chr1 61648700 61649258 -181015095 - MLT2A2 LTR ERVL 0 554 3 187 241 126 23 chr1 61649301 61649388 -181014965 - L2 LINE L2 -195 3077 2982 590 166 36 43 chr1 61650166 61650305 -181014048 + MIR SINE MIR 70 207 -55 2079 168 25 77 chr1 61650368 61650851 -181013502 - L1PA16 LINE L1 -3 6163 5706 252 0 0 0 chr1 61651398 61651426 -181012927 + (TTA)n Simple_repeat Simple_repeat 3 30 0 23968 32 0 1 chr1 61651426 61654900 -181009453 - L1PA3 LINE L1 -18 6137 2667 459 0 0 0 chr1 61654947 61654998 -181009355 + (CA)n Simple_repeat Simple_repeat 2 52 0 1143 296 113 42 chr1 61655236 61656016 -181008337 - ERVL LTR ERVL -384 5380 4546 1598 319 73 42 chr1 61656160 61657318 -181007035 - ERVL LTR ERVL -1888 3636 2403 2371 88 0 13 chr1 61657757 61658063 -181006290 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 61658376 61658397 -181005956 + AT_rich Low_complexity Low_complexity 1 21 0 1914 209 64 27 chr1 61658998 61659079 -181005274 - MLT1C LTR MaLR 0 467 391 1792 168 3 23 chr1 61659079 61659383 -181004970 - AluJb SINE Alu -14 298 1 1914 209 64 27 chr1 61659383 61659751 -181004602 - MLT1C LTR MaLR -76 391 1 369 259 8 33 chr1 61660331 61660439 -181003914 - MIR SINE MIR -63 145 38 1146 146 5 16 chr1 61661024 61661209 -181003144 + MER20 DNA MER1_type 37 219 0 386 127 0 16 chr1 61661429 61661492 -181002861 - MER91 DNA MER1_type -78 62 1 243 326 64 32 chr1 61662510 61662697 -181001656 + MIR SINE MIR 35 227 -35 383 262 25 16 chr1 61662848 61662970 -181001383 - L2 LINE L2 -213 3059 2937 186 250 62 0 chr1 61663628 61663676 -181000677 - L2 LINE L2 -12 3260 3210 * 264 311 131 8 chr1 61663671 61663793 -181000560 + MIR SINE MIR 28 164 -98 245 220 88 44 chr1 61664234 61664325 -181000028 + MIR SINE MIR 42 136 -72 205 365 0 14 chr1 61665351 61665425 -180998928 + L2 LINE L2 3138 3210 -62 1864 143 24 3 chr1 61665441 61665728 -180998625 - AluSx SINE Alu -19 293 1 226 269 90 0 chr1 61665855 61665933 -180998420 + MIR SINE MIR 126 210 -52 342 106 0 106 chr1 61666395 61666565 -180997788 + (TTAA)n Simple_repeat Simple_repeat 2 153 0 1301 209 90 19 chr1 61666579 61666890 -180997463 - MER2 DNA MER2_type -12 333 1 301 259 152 14 chr1 61667181 61667342 -180997011 - MIR SINE MIR -54 154 34 343 283 135 12 chr1 61667840 61668024 -180996329 - MIR SINE MIR -10 252 45 329 319 71 58 chr1 61668394 61668758 -180995595 - L2 LINE L2 -21 3251 2883 528 252 94 25 chr1 61669005 61669164 -180995189 + MIR SINE MIR 19 188 -74 870 238 33 14 chr1 61669481 61669695 -180994658 - MIR SINE MIR -37 225 8 354 242 21 0 chr1 61670338 61670433 -180993920 + MIR3 SINE MIR 87 183 -25 2159 182 73 6 chr1 61670607 61671046 -180993307 + MLT1F LTR MaLR 3 536 -6 2263 102 0 3 chr1 61671339 61671633 -180992720 + AluSx SINE Alu 1 293 -19 2499 56 0 0 chr1 61671819 61672123 -180992230 - L1PA8 LINE L1 -3 6169 5866 389 190 6 146 chr1 61673130 61673174 -180991179 - L1ME4a LINE L1 -17 6104 6056 1850 189 7 61 chr1 61673174 61673581 -180990772 - MLT1B LTR MaLR -3 387 3 389 190 6 146 chr1 61673581 61673694 -180990659 - L1ME4a LINE L1 -65 6056 5969 980 252 13 0 chr1 61673766 61673996 -180990357 - MIR SINE MIR -12 250 18 201 405 48 4 chr1 61674115 61674342 -180990011 + MIR SINE MIR 23 259 -3 4041 264 98 24 chr1 61674558 61675616 -180988737 - L2 LINE L2 0 3313 2335 453 66 0 0 chr1 61675616 61675677 -180988676 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 4041 264 98 24 chr1 61675677 61676470 -180987883 - L2 LINE L2 -978 2335 1321 351 305 39 16 chr1 61676586 61676714 -180987639 + MIR SINE MIR 22 152 -110 211 310 30 10 chr1 61677073 61677173 -180987180 + MIR SINE MIR 69 170 -92 464 297 0 0 chr1 61677732 61677860 -180986493 - MER94 DNA DNA -5 129 2 211 228 97 53 chr1 61677861 61677975 -180986378 + MIR SINE MIR 78 196 -66 949 181 14 24 chr1 61678009 61678219 -180986134 - AluJo SINE Alu -18 294 87 312 341 52 37 chr1 61678241 61678323 -180986030 + L2 LINE L2 2573 2652 -662 954 153 68 0 chr1 61678323 61678500 -180985853 - MER5A DNA MER1_type 0 189 1 312 341 52 37 chr1 61678500 61678687 -180985666 + L2 LINE L2 2652 2846 -468 305 223 63 23 chr1 61678737 61678845 -180985508 + MIR SINE MIR 11 118 -93 1777 189 183 24 chr1 61679169 61679634 -180984719 + MLT1F LTR MaLR 4 542 0 2871 159 75 27 chr1 61679728 61680314 -180984039 + LTR18B LTR ERVL 1 614 0 294 286 96 28 chr1 61680722 61680900 -180983453 - MIR SINE MIR 0 262 73 261 299 31 21 chr1 61681183 61681280 -180983073 - L2 LINE L2 -212 3060 2963 245 253 126 42 chr1 61681332 61681427 -180982926 + MER5A DNA MER1_type 4 106 -83 322 296 59 30 chr1 61681622 61681791 -180982562 - Charlie8 DNA MER1_type -2243 174 1 250 275 25 0 chr1 61681904 61681984 -180982369 + MIR3 SINE MIR 103 184 -24 351 289 35 13 chr1 61682565 61682741 -180981612 + MIR3 SINE MIR 3 185 -65 772 279 18 5 chr1 61682752 61682974 -180981379 - MIR SINE MIR -7 255 31 303 162 103 15 chr1 61683158 61683226 -180981127 - MIR SINE MIR -80 182 109 281 275 266 0 chr1 61683194 61683303 -180981050 - MIR3 SINE MIR -67 141 4 * 624 199 35 14 chr1 61684027 61684168 -180980185 + MIR SINE MIR 64 207 -55 194 318 16 0 chr1 61684171 61684234 -180980119 + MIR SINE MIR 166 229 -33 312 261 43 52 chr1 61684494 61684609 -180979744 + L2 LINE L2 3138 3251 -21 298 146 73 61 chr1 61684716 61684798 -180979555 + LTR41 LTR ERVL 690 772 -1 228 264 0 0 chr1 61684805 61684858 -180979495 + MIR SINE MIR 2 54 -208 550 258 18 18 chr1 61685726 61685893 -180978460 + LTR16B LTR ERVL 286 452 -12 217 234 43 0 chr1 61685912 61685959 -180978394 + L2 LINE L2 3206 3254 -18 206 161 0 54 chr1 61686821 61686877 -180977476 + CT-rich Low_complexity Low_complexity 5 57 0 305 273 11 11 chr1 61686943 61687031 -180977322 - MER94 DNA DNA -7 127 40 240 200 20 0 chr1 61687064 61687114 -180977239 + (CA)n Simple_repeat Simple_repeat 2 52 0 737 201 53 41 chr1 61687439 61687608 -180976745 - MIR SINE MIR 0 262 92 525 243 15 29 chr1 61687750 61687886 -180976467 + MER94 DNA DNA 1 134 0 2550 208 35 18 chr1 61688040 61688550 -180975803 - LTR40a LTR ERVL 0 519 1 1467 154 109 37 chr1 61688575 61688925 -180975428 + THE1C LTR MaLR 1 375 0 244 290 80 25 chr1 61689302 61689464 -180974889 - L1ME4a LINE L1 -4 6117 5947 346 278 71 60 chr1 61689622 61689874 -180974479 + MIR SINE MIR 8 262 0 267 336 9 26 chr1 61690637 61690753 -180973600 + MIR3 SINE MIR 82 195 -13 23 33 0 0 chr1 61690847 61690877 -180973476 + AT_rich Low_complexity Low_complexity 1 30 0 215 242 44 66 chr1 61690946 61691037 -180973316 - L2 LINE L2 0 3272 3184 204 310 14 0 chr1 61691056 61691127 -180973226 + MIR SINE MIR 83 154 -108 244 308 91 21 chr1 61691287 61691430 -180972923 + L2 LINE L2 2595 2747 -567 310 277 169 15 chr1 61692536 61692666 -180971687 - L3 LINE CR1 -16 1561 1412 242 308 178 5 chr1 61692661 61692846 -180971507 + L2 LINE L2 2605 2821 -493 * 4577 117 5 1 chr1 61692942 61693610 -180970743 + L1PA14 LINE L1 5492 6161 0 443 167 94 10 chr1 61694630 61694726 -180969627 - MLT1L LTR MaLR -6 609 506 327 136 23 102 chr1 61695140 61695228 -180969125 + L1ME LINE L1 5404 5484 -680 815 284 21 8 chr1 61695266 61695505 -180968848 + LTR16A LTR ERVL 209 450 0 881 212 150 78 chr1 61695505 61695864 -180968489 + L1ME3 LINE L1 5777 6161 -1 760 211 31 45 chr1 61695910 61696113 -180968240 + MLT2B1 LTR ERVL 30 231 -183 237 188 0 0 chr1 61696209 61696257 -180968096 + L2 LINE L2 3265 3312 -1 500 238 101 18 chr1 61696492 61696660 -180967693 + MIR SINE MIR 64 245 -17 251 257 131 11 chr1 61697332 61697439 -180966914 + MIR SINE MIR 37 154 -92 1935 181 77 46 chr1 61697489 61697945 -180966408 + MLT2B1 LTR ERVL 2 476 -44 417 39 0 0 chr1 61697945 61697996 -180966357 + (CA)n Simple_repeat Simple_repeat 2 52 0 1935 181 77 46 chr1 61697996 61698035 -180966318 + MLT2B1 LTR ERVL 476 512 -8 26 0 0 0 chr1 61698218 61698244 -180966109 + AT_rich Low_complexity Low_complexity 1 26 0 627 220 23 23 chr1 61698292 61698469 -180965884 - L1ME1 LINE L1 0 6334 5999 2826 171 19 67 chr1 61698644 61699276 -180965077 + MER7C DNA MER2_type 1 602 0 837 281 147 25 chr1 61699341 61699817 -180964536 + L2 LINE L2 2235 2768 -546 195 42 0 0 chr1 61699878 61699902 -180964451 + (CA)n Simple_repeat Simple_repeat 2 25 0 414 227 76 108 chr1 61700070 61700255 -180964098 + L2 LINE L2 3133 3311 -2 271 197 76 15 chr1 61700860 61700926 -180963427 - L2 LINE L2 -49 3264 3195 408 338 20 45 chr1 61701145 61701346 -180963007 - MLT1I LTR MaLR -198 211 16 1872 154 84 0 chr1 61701584 61701895 -180962458 - MER44D DNA MER2_type -2 607 1 414 0 0 0 chr1 61701898 61701944 -180962409 + (CA)n Simple_repeat Simple_repeat 2 47 0 1578 269 77 9 chr1 61701991 61702419 -180961934 - LTR16B LTR ERVL -7 457 1 22 35 0 0 chr1 61702425 61702454 -180961899 + AT_rich Low_complexity Low_complexity 1 29 0 383 306 196 0 chr1 61704048 61704221 -180960132 - MIR SINE MIR -28 234 28 397 229 0 0 chr1 61704492 61704575 -180959778 + MIR SINE MIR 67 149 -113 1171 175 91 27 chr1 61705261 61705537 -180958816 - L1MA9 LINE L1 -20 6279 5988 528 228 18 0 chr1 61705869 61705983 -180958370 + LTR37B LTR ERV1 5 120 -348 923 213 11 0 chr1 61705983 61706166 -180958187 - MER58A DNA MER1_type 0 224 40 1141 176 35 106 chr1 61706180 61706556 -180957797 + LTR37B LTR ERV1 114 462 -6 332 264 208 9 chr1 61707167 61707273 -180957080 + L2 LINE L2 3146 3272 0 272 248 29 67 chr1 61707339 61707444 -180956909 + MIR3 SINE MIR 87 187 -21 361 237 83 39 chr1 61707845 61708001 -180956352 + MIR3 SINE MIR 4 166 -42 767 246 96 18 chr1 61708004 61708426 -180955927 - LTR33 LTR ERVL -3 518 23 4676 109 12 12 chr1 61708694 61709380 -180954973 - L1PA14 LINE L1 -9 6152 5467 2301 111 134 8 chr1 61709381 61709761 -180954592 - MSTA LTR MaLR 0 428 1 1363 108 37 0 chr1 61709763 61709977 -180954376 + L1P4 LINE L1 5264 5485 -676 375 258 105 0 chr1 61709990 61710114 -180954239 + L2 LINE L2 3136 3272 0 255 327 77 0 chr1 61710255 61710359 -180953994 + L2 LINE L2 3153 3264 -8 252 281 62 10 chr1 61710748 61710844 -180953509 - L2 LINE L2 -39 3274 3174 264 291 35 0 chr1 61710963 61711049 -180953304 + L1MC4a LINE L1 5812 5900 -1908 2308 135 43 5 chr1 61711057 61711462 -180952891 + Tigger2 DNA MER2_type 1 2716 -2 246 273 121 23 chr1 61711463 61711595 -180952758 + L1MC4a LINE L1 5904 6048 -1760 646 258 32 32 chr1 61711705 61711957 -180952396 - L2 LINE L2 -185 3087 2836 391 288 98 0 chr1 61712024 61712187 -180952166 - MIR SINE MIR -24 238 60 806 75 0 0 chr1 61712459 61712565 -180951788 + AluSg/x SINE Alu 204 309 0 377 284 10 0 chr1 61712774 61712876 -180951477 - MIR SINE MIR -113 149 47 218 320 41 8 chr1 61713016 61713138 -180951215 - L2 LINE L2 -236 3036 2911 366 205 13 0 chr1 61713762 61713840 -180950513 + MIR SINE MIR 184 262 0 247 243 48 23 chr1 61713858 61713975 -180950378 - MIR SINE MIR -68 140 23 188 225 0 0 chr1 61714152 61714192 -180950161 - MIR SINE MIR -104 158 119 756 229 67 33 chr1 61714842 61715082 -180949271 + MIR SINE MIR 6 253 -9 181 286 0 20 chr1 61715184 61715233 -180949120 - MIR SINE MIR -184 78 31 191 250 0 0 chr1 61716321 61716361 -180947992 + L2 LINE L2 3208 3247 -25 242 257 174 28 chr1 61716466 61716575 -180947778 + L2 LINE L2 3133 3257 -15 314 208 42 0 chr1 61716989 61717061 -180947292 - MIR SINE MIR -116 146 72 680 267 29 15 chr1 61717083 61717289 -180947064 - MIR SINE MIR -16 246 38 223 301 158 8 chr1 61717311 61717444 -180946909 - MER5B DNA MER1_type -20 158 6 216 184 20 20 chr1 61717452 61717501 -180946852 + MIR SINE MIR 97 145 -117 228 262 21 14 chr1 61718065 61718153 -180946200 - MIR SINE MIR -69 139 76 1130 207 89 61 chr1 61718784 61719175 -180945178 + MLT1C LTR MaLR 10 411 -56 23004 31 0 1 chr1 61719177 61722669 -180941684 - L1PA3 LINE L1 0 6155 2667 495 0 0 0 chr1 61722716 61722771 -180941582 + (CA)n Simple_repeat Simple_repeat 2 56 0 1148 295 113 42 chr1 61723009 61723789 -180940564 - ERVL LTR ERVL -384 5380 4546 1557 317 75 43 chr1 61723933 61725091 -180939262 - ERVL LTR ERVL -1888 3636 2403 2394 88 0 13 chr1 61725530 61725836 -180938517 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 61726149 61726170 -180938183 + AT_rich Low_complexity Low_complexity 1 21 0 1773 209 64 27 chr1 61726771 61726852 -180937501 - MLT1C LTR MaLR 0 467 391 1805 166 3 23 chr1 61726852 61727154 -180937199 - AluJb SINE Alu -16 296 1 1773 209 64 27 chr1 61727154 61727522 -180936831 - MLT1C LTR MaLR -76 391 1 342 258 0 34 chr1 61728105 61728194 -180936159 - MIR SINE MIR -63 145 60 1146 146 5 16 chr1 61728795 61728980 -180935373 + MER20 DNA MER1_type 37 219 0 361 127 0 16 chr1 61729200 61729263 -180935090 - MER91 DNA MER1_type -78 62 1 243 326 64 32 chr1 61730280 61730467 -180933886 + MIR SINE MIR 35 227 -35 383 262 25 16 chr1 61730618 61730740 -180933613 - L2 LINE L2 -213 3059 2937 186 250 62 0 chr1 61731398 61731446 -180932907 - L2 LINE L2 -12 3260 3210 * 264 311 131 8 chr1 61731441 61731563 -180932790 + MIR SINE MIR 28 164 -98 232 231 88 44 chr1 61732004 61732095 -180932258 + MIR SINE MIR 42 136 -72 205 365 0 14 chr1 61733121 61733195 -180931158 + L2 LINE L2 3138 3210 -62 1864 143 24 3 chr1 61733211 61733498 -180930855 - AluSx SINE Alu -19 293 1 226 269 90 0 chr1 61733625 61733703 -180930650 + MIR SINE MIR 126 210 -52 252 103 0 103 chr1 61734164 61734280 -180930073 + (TTAA)n Simple_repeat Simple_repeat 4 107 0 1301 209 90 19 chr1 61734294 61734605 -180929748 - MER2 DNA MER2_type -12 333 1 282 265 153 11 chr1 61734896 61735056 -180929297 - MIR SINE MIR -54 154 34 343 283 135 12 chr1 61735554 61735738 -180928615 - MIR SINE MIR -10 252 45 329 319 71 58 chr1 61736108 61736472 -180927881 - L2 LINE L2 -21 3251 2883 528 252 94 25 chr1 61736719 61736878 -180927475 + MIR SINE MIR 19 188 -74 870 238 33 14 chr1 61737195 61737409 -180926944 - MIR SINE MIR -37 225 8 354 242 21 0 chr1 61738053 61738148 -180926205 + MIR3 SINE MIR 87 183 -25 2159 182 72 6 chr1 61738322 61738761 -180925592 + MLT1F LTR MaLR 3 536 -6 2221 101 0 10 chr1 61739054 61739352 -180925001 + AluSq SINE Alu 1 295 -18 636 278 31 15 chr1 61739364 61739590 -180924763 - MLT1H1 LTR MaLR -292 275 32 275 240 94 88 chr1 61740222 61740414 -180923939 + L1ME4a LINE L1 5927 6119 -2 3278 152 14 12 chr1 61741264 61741830 -180922523 + Tigger1 DNA MER2_type 1676 2242 -176 328 206 52 21 chr1 61742007 61742104 -180922249 - LTR33 LTR ERVL -321 200 101 1231 159 17 6 chr1 61742214 61743481 -180920872 + ALR/Alpha Satellite centromeric 1 1280 -27 1039 200 145 83 chr1 61743643 61743988 -180920365 + MLT1C LTR MaLR 67 415 -52 44694 42 2 0 chr1 61743988 61750125 -180914228 - L1PA4 LINE L1 -3 6152 3 241 146 0 21 chr1 61750128 61750176 -180914177 + MLT1C LTR MaLR 403 449 -18 305 266 11 11 chr1 61750226 61750320 -180914033 - MIR SINE MIR -121 141 48 720 231 35 6 chr1 61750323 61750496 -180913857 + MER45A DNA AcHobo 1 178 0 2178 208 59 11 chr1 61750623 61751099 -180913254 + MLT1D LTR MaLR 7 505 0 232 297 0 0 chr1 61751791 61751855 -180912498 + MIR SINE MIR 56 119 -143 819 281 56 61 chr1 61752621 61753030 -180911323 - MLT1J LTR MaLR -92 419 13 779 262 21 0 chr1 61753074 61753261 -180911092 - MLT2E LTR ERVL 0 628 438 370 307 30 0 chr1 61753261 61753362 -180910991 - MLT2E LTR ERVL -400 228 125 * 436 209 78 23 chr1 61753349 61753478 -180910875 - MLT2F LTR ERVL -527 136 1 1696 235 37 15 chr1 61754517 61754973 -180909380 - MLT1C LTR MaLR 0 467 2 208 200 33 17 chr1 61755337 61755397 -180908956 - L2 LINE L2 -12 3260 3200 288 296 28 35 chr1 61755638 61755780 -180908573 - L2 LINE L2 -1 3312 3172 261 0 0 0 chr1 61756100 61756129 -180908224 + (TG)n Simple_repeat Simple_repeat 1 29 0 282 95 0 0 chr1 61756130 61756172 -180908181 + (GA)n Simple_repeat Simple_repeat 2 43 0 304 320 56 0 chr1 61756621 61756746 -180907607 - L2 LINE L2 -236 3036 2905 265 262 0 0 chr1 61758827 61758888 -180905465 + CT-rich Low_complexity Low_complexity 3 63 0 327 242 73 32 chr1 61759211 61759335 -180905018 - MIR SINE MIR -84 178 50 22 0 0 0 chr1 61759582 61759604 -180904749 + AT_rich Low_complexity Low_complexity 1 22 0 1663 207 61 96 chr1 61760682 61761242 -180903111 - MLT1F LTR MaLR 0 542 3 231 236 0 18 chr1 61762409 61762464 -180901889 + MIR SINE MIR 99 152 -110 198 195 0 0 chr1 61762513 61762554 -180901799 + MIR SINE MIR 113 153 -109 294 321 29 22 chr1 61762667 61762804 -180901549 + MIR SINE MIR 6 143 -119 258 337 0 32 chr1 61763333 61763428 -180900925 - L2 LINE L2 0 3313 3222 195 42 0 0 chr1 61763566 61763590 -180900763 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1391 93 0 47 chr1 61763622 61763815 -180900538 - AluSx SINE Alu -128 184 1 552 242 48 30 chr1 61763852 61764017 -180900336 + MIR SINE MIR 29 196 -66 338 246 112 37 chr1 61765027 61765161 -180899192 + MIR SINE MIR 23 166 -96 337 272 69 64 chr1 61765736 61765909 -180898444 - MIR3 SINE MIR -3 205 32 406 207 24 0 chr1 61766178 61766260 -180898093 - MER96 DNA MER1_type? -91 84 1 363 307 165 26 chr1 61766261 61766528 -180897825 + L2 LINE L2 2887 3190 -123 351 327 78 27 chr1 61767269 61767526 -180896827 + L2 LINE L2 2253 2522 -792 2535 141 6 3 chr1 61767551 61767912 -180896441 - THE1B LTR MaLR -2 362 1 706 201 91 40 chr1 61767955 61768004 -180896349 - MER6B DNA MER2_type -656 209 164 2761 72 31 3 chr1 61768004 61768353 -180896000 - L1PA7 LINE L1 -3 6151 5793 706 201 91 40 chr1 61768353 61768502 -180895851 - MER6B DNA MER2_type -701 164 1 540 267 142 52 chr1 61768583 61768927 -180895426 - MLT1J LTR MaLR -51 460 86 207 342 116 82 chr1 61769018 61769407 -180894946 + L2 LINE L2 2822 3223 -49 2424 127 28 40 chr1 61769551 61769834 -180894519 - MLT1B LTR MaLR 0 390 112 2266 104 3 7 chr1 61769834 61770142 -180894211 - AluSp SINE Alu -6 307 1 2424 127 28 40 chr1 61770142 61770253 -180894100 - MLT1B LTR MaLR -278 112 1 277 313 73 0 chr1 61770341 61770437 -180893916 + L2 LINE L2 3145 3247 -25 434 303 129 6 chr1 61770922 61771138 -180893215 + MIR SINE MIR 16 249 -13 268 173 67 115 chr1 61771178 61771282 -180893071 + MIR SINE MIR 118 216 -46 305 265 20 41 chr1 61771424 61771522 -180892831 + MIR3 SINE MIR 11 106 -102 198 103 0 0 chr1 61772652 61772681 -180891672 + (TTCTCC)n Simple_repeat Simple_repeat 6 34 0 4275 154 16 29 chr1 61772684 61773442 -180890911 - L1MB2 LINE L1 -2 6169 5422 2472 161 25 50 chr1 61773560 61774039 -180890314 - MLT1C LTR MaLR 0 467 1 1009 311 94 17 chr1 61774692 61775094 -180889259 + LTR16A LTR ERVL 18 450 0 487 305 58 21 chr1 61776017 61776207 -180888146 + MLT1I LTR MaLR 4 200 -209 211 325 87 55 chr1 61776214 61776341 -180888012 + MIR SINE MIR 39 168 -94 657 262 85 80 chr1 61776746 61777308 -180887045 - L2 LINE L2 -2 3311 2737 584 274 0 63 chr1 61777327 61777564 -180886789 - L1ME1 LINE L1 -8 6227 6006 6581 154 19 23 chr1 61777590 61777748 -180886605 - L1MA4 LINE L1 -20 6280 6123 2108 104 0 0 chr1 61777748 61778016 -180886337 + AluSg SINE Alu 39 306 -4 6581 154 19 23 chr1 61778016 61779990 -180884363 - L1MA4 LINE L1 -177 6123 4157 5279 219 63 31 chr1 61779979 61781951 -180882402 - L1ME1 LINE L1 -222 6013 3952 * 2622 108 24 14 chr1 61781951 61782322 -180882031 + THE1C LTR MaLR 1 375 0 5279 219 63 31 chr1 61782322 61782501 -180881852 - L1ME1 LINE L1 -2283 3952 3780 988 166 36 14 chr1 61782498 61782721 -180881632 - L1ME1 LINE L1 -4125 2271 2044 * 185 224 48 188 chr1 61783232 61783482 -180880871 + L2 LINE L2 2877 3091 -181 834 235 43 26 chr1 61783946 61784180 -180880173 - L1ME3A LINE L1 0 6170 5933 1570 191 117 3 chr1 61784192 61784501 -180879852 - MER2 DNA MER2_type -1 344 1 571 198 124 145 chr1 61784812 61785369 -180878984 + MER34C LTR ERV1 35 579 -6 30 27 0 0 chr1 61785561 61785598 -180878755 + AT_rich Low_complexity Low_complexity 1 37 0 295 339 36 52 chr1 61786060 61786161 -180878192 - MIR SINE MIR -3 259 161 613 189 10 107 chr1 61786161 61786357 -180877996 + MER104 DNA MER2_type 1 177 -3 295 339 36 52 chr1 61786357 61786447 -180877906 - MIR SINE MIR -101 161 71 518 230 122 7 chr1 61787251 61787390 -180876963 - MIR3 SINE MIR -16 192 38 199 270 14 54 chr1 61787741 61787815 -180876538 + L2 LINE L2 2916 2986 -286 264 389 9 28 chr1 61788086 61788194 -180876159 - L2 LINE L2 -46 3226 3121 307 288 12 0 chr1 61788214 61788294 -180876059 - MIR SINE MIR -110 152 72 336 356 70 6 chr1 61788464 61788660 -180875693 - MIR SINE MIR -54 208 3 2512 144 8 13 chr1 61789427 61789803 -180874550 - THE1C LTR MaLR 0 375 2 10320 123 36 37 chr1 61789804 61791386 -180872967 - THE1C-int LTR MaLR 0 1580 1 2472 126 10 49 chr1 61791386 61791776 -180872577 - THE1C LTR MaLR 0 375 1 536 248 83 8 chr1 61791908 61792029 -180872324 - MIR SINE MIR -110 152 23 231 181 9 162 chr1 61792551 61792597 -180871756 - L2 LINE L2 -4 3268 3245 297 0 0 0 chr1 61792597 61792630 -180871723 + (TG)n Simple_repeat Simple_repeat 1 33 0 231 181 9 162 chr1 61792630 61792688 -180871665 - L2 LINE L2 -27 3245 3180 410 202 32 81 chr1 61793188 61793295 -180871058 - LTR52 LTR ERVL -303 118 16 1308 208 39 42 chr1 61793295 61793474 -180870879 - AluJo SINE Alu -1 311 132 204 40 0 0 chr1 61793474 61793499 -180870854 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1308 208 39 42 chr1 61793499 61793631 -180870722 - AluJo SINE Alu -180 132 1 410 202 32 81 chr1 61793631 61793647 -180870706 - LTR52 LTR ERVL -405 16 1 913 297 77 77 chr1 61793647 61794659 -180869694 + L2 LINE L2 2283 3294 -19 4127 253 67 53 chr1 61795020 61796387 -180867966 + MER69 DNA AcHobo 1 1386 -1140 1982 203 126 31 chr1 61796539 61797126 -180867227 + MER69 DNA AcHobo 1884 2526 0 1292 188 156 33 chr1 61797408 61797806 -180866547 + MLT1C LTR MaLR 18 464 -3 246 371 52 0 chr1 61797924 61798040 -180866313 - L2 LINE L2 -13 3259 3138 2384 127 36 28 chr1 61798647 61799008 -180865345 + THE1B LTR MaLR 1 364 0 223 297 66 0 chr1 61799932 61800023 -180864330 + MIR SINE MIR 51 147 -61 2960 173 0 12 chr1 61800202 61800688 -180863665 + MLT2B2 LTR ERVL 4 483 -32 251 250 71 12 chr1 61800726 61800810 -180863543 + MER91C DNA MER1_type 19 107 -33 510 285 36 26 chr1 61800822 61801015 -180863338 - ERVL LTR ERVL -3366 2398 2204 214 200 0 0 chr1 61801356 61801396 -180862957 - L2 LINE L2 -1 3312 3273 2989 82 3 13 chr1 61801555 61801934 -180862419 + THE1C LTR MaLR 1 375 0 6891 119 32 8 chr1 61801934 61803313 -180861040 + THE1C-int LTR MaLR 1 1451 -129 2291 123 3 15 chr1 61803313 61803646 -180860707 + THE1C LTR MaLR 47 375 0 265 289 24 0 chr1 61803650 61803733 -180860620 + L2 LINE L2 2927 3011 -302 872 305 9 2 chr1 61803754 61804100 -180860253 + MLT2E LTR ERVL 19 420 -208 452 222 90 35 chr1 61804137 61804281 -180860072 + MIR SINE MIR 111 262 0 207 337 31 0 chr1 61804358 61804456 -180859897 - L2 LINE L2 -577 2737 2637 359 305 45 28 chr1 61804733 61804910 -180859443 + MIR SINE MIR 77 256 -6 198 333 57 0 chr1 61804940 61805045 -180859308 + MIR SINE MIR 146 256 -6 2122 171 28 6 chr1 61805201 61805558 -180858795 - MLT1A1 LTR MaLR 0 365 1 623 313 13 30 chr1 61806193 61806426 -180857927 - L2 LINE L2 -2 3311 3083 240 309 15 0 chr1 61806480 61806548 -180857805 - L2 LINE L2 -40 3273 3205 493 295 79 16 chr1 61806551 61806741 -180857612 + MLT1J LTR MaLR 1 202 -309 2289 150 52 60 chr1 61806774 61807221 -180857132 + MER65A LTR ERV1 3 445 0 497 240 45 39 chr1 61807234 61807388 -180856965 + MLT1J2 LTR MaLR 293 447 -3 288 356 0 41 chr1 61807540 61807686 -180856667 - L2 LINE L2 -216 3056 2917 459 272 220 11 chr1 61808225 61808416 -180855937 - MIR SINE MIR -15 247 17 342 308 112 21 chr1 61808980 61809123 -180855230 - MIR SINE MIR -73 189 34 380 242 150 0 chr1 61809216 61809336 -180855017 - MER112 DNA MER1_type -43 217 80 247 301 36 0 chr1 61809937 61810020 -180854333 + Charlie7 DNA MER1_type 1 86 -2526 23 0 0 0 chr1 61810055 61810078 -180854275 + AT_rich Low_complexity Low_complexity 1 23 0 261 197 98 0 chr1 61810301 61810362 -180853991 + HsTC2 DNA Tc2 3 69 -1829 189 107 0 0 chr1 61810452 61810480 -180853873 + (TG)n Simple_repeat Simple_repeat 1 28 0 1596 125 20 116 chr1 61810498 61810851 -180853502 + MER7A DNA MER2_type 10 326 -20 28 61 0 0 chr1 61811269 61811318 -180853035 + AT_rich Low_complexity Low_complexity 1 49 0 394 324 45 0 chr1 61811496 61811718 -180852635 - L1ME2 LINE L1 -240 5924 5693 1472 201 19 10 chr1 61811749 61812058 -180852295 - MSTD-int LTR MaLR -1423 312 1 1923 169 39 26 chr1 61812060 61812450 -180851903 - MSTD LTR MaLR -1 395 1 607 306 106 32 chr1 61812633 61813732 -180850621 - L1ME2 LINE L1 -1537 4609 3430 404 281 23 59 chr1 61813778 61813847 -180850506 + HsTC2 DNA Tc2 679 749 -1149 2278 116 0 0 chr1 61813847 61814149 -180850204 + AluSx SINE Alu 1 302 -10 404 281 23 59 chr1 61814149 61814300 -180850053 + HsTC2 DNA Tc2 749 891 -1007 182 374 111 10 chr1 61814681 61814780 -180849573 + L2 LINE L2 3141 3249 -23 250 249 43 108 chr1 61815562 61815747 -180848606 + L2 LINE L2 2892 3064 -208 758 276 61 29 chr1 61817749 61817995 -180846358 - MIR SINE MIR -6 256 3 407 285 70 13 chr1 61818586 61818744 -180845609 + MIR SINE MIR 46 212 -50 190 458 23 0 chr1 61818861 61818992 -180845361 - L2 LINE L2 0 3272 3139 2015 172 27 3 chr1 61819118 61819485 -180844868 + MLT1B LTR MaLR 3 378 -12 246 111 0 0 chr1 61819504 61819540 -180844813 + L2 LINE L2 3277 3312 -1 208 298 152 19 chr1 61819619 61819777 -180844576 - L2 LINE L2 -345 2969 2791 210 220 68 0 chr1 61819889 61819948 -180844405 - MIR SINE MIR -59 203 141 264 265 0 0 chr1 61820174 61820272 -180844081 + (TG)n Simple_repeat Simple_repeat 2 99 0 648 242 7 123 chr1 61821387 61821656 -180842697 - MLT1H LTR MaLR -179 370 133 412 267 91 105 chr1 61822279 61822631 -180841722 + L2 LINE L2 2925 3271 -1 376 278 39 67 chr1 61823502 61823682 -180840671 + MIR SINE MIR 23 197 -65 261 0 0 0 chr1 61824435 61824464 -180839889 + (T)n Simple_repeat Simple_repeat 1 29 0 266 44 0 67 chr1 61825243 61825288 -180839065 + (T)n Simple_repeat Simple_repeat 1 42 0 1924 252 50 64 chr1 61825911 61826649 -180837704 - MER21B LTR ERV1 -109 754 27 475 301 24 0 chr1 61827248 61827371 -180836982 - L2 LINE L2 0 3313 3188 22 0 0 0 chr1 61827383 61827405 -180836948 + AT_rich Low_complexity Low_complexity 1 22 0 535 278 139 0 chr1 61827452 61827646 -180836707 - MIR SINE MIR -30 232 12 252 253 35 46 chr1 61828579 61828666 -180835687 + MIR3 SINE MIR 93 178 -30 209 259 0 19 chr1 61829121 61829175 -180835178 + C-rich Low_complexity Low_complexity 3 55 0 456 191 136 18 chr1 61829388 61829498 -180834855 - FRAM SINE Alu -18 158 36 662 199 81 11 chr1 61829506 61829692 -180834661 - MER5C DNA MER1_type -44 280 82 359 289 73 60 chr1 61829813 61830031 -180834322 + MIR SINE MIR 23 243 -19 461 242 40 24 chr1 61830227 61830351 -180834002 + L2 LINE L2 3183 3308 -5 385 200 0 0 chr1 61830723 61830788 -180833565 - MIR3 SINE MIR 0 208 144 654 243 108 45 chr1 61830793 61831015 -180833338 + MIR SINE MIR 1 236 -26 210 286 219 9 chr1 61831054 61831159 -180833194 - MIR3 SINE MIR -76 132 6 301 374 70 6 chr1 61831176 61831347 -180833006 - MIR3 SINE MIR -15 193 12 521 195 8 25 chr1 61831742 61831860 -180832493 + MIR SINE MIR 130 245 -17 1537 35 69 5 chr1 61832054 61832256 -180832097 - L1PA4 LINE L1 -3 6152 5938 795 190 19 6 chr1 61832275 61832433 -180831920 + MER58A DNA MER1_type 1 160 0 573 88 0 0 chr1 61832559 61832639 -180831714 + (CA)n Simple_repeat Simple_repeat 2 81 0 256 363 35 9 chr1 61832923 61833036 -180831317 + MIR SINE MIR 16 131 -77 252 193 88 18 chr1 61833335 61833392 -180830961 - MIR3 SINE MIR -144 64 4 515 278 43 24 chr1 61833661 61833873 -180830480 - MIR3 SINE MIR -44 218 4 215 304 0 0 chr1 61834235 61834291 -180830062 + MIR SINE MIR 95 150 -58 708 315 77 6 chr1 61834304 61834615 -180829738 - MLT1I LTR MaLR -14 395 63 581 344 31 31 chr1 61834699 61835054 -180829299 + L2 LINE L2 2286 2640 -674 31 26 0 0 chr1 61835136 61835174 -180829179 + AT_rich Low_complexity Low_complexity 1 38 0 478 331 6 6 chr1 61835603 61835772 -180828581 - MIR3 SINE MIR -22 186 18 411 304 26 35 chr1 61835994 61836169 -180828184 + MIR SINE MIR 20 192 -30 1764 171 0 17 chr1 61836450 61836737 -180827616 - AluJo SINE Alu -30 282 1 255 202 0 73 chr1 61837077 61837188 -180827165 + Charlie8 DNA MER1_type 236 2407 -10 307 344 66 29 chr1 61837247 61837491 -180826862 - L2 LINE L2 -631 2683 2431 237 352 0 0 chr1 61837503 61837574 -180826779 + L2 LINE L2 3202 3272 0 186 71 0 0 chr1 61838481 61838509 -180825844 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 180 340 0 0 chr1 61838567 61838620 -180825733 + L2 LINE L2 2999 3051 -262 225 288 152 0 chr1 61838688 61838820 -180825533 + L2 LINE L2 3161 3312 -1 389 332 18 95 chr1 61838861 61839094 -180825259 - L2 LINE L2 -85 3187 2978 2266 119 0 0 chr1 61839094 61839396 -180824957 - AluSc SINE Alu -7 302 1 389 332 18 95 chr1 61839396 61839445 -180824908 - L2 LINE L2 -294 2978 2927 1688 240 34 46 chr1 61840034 61840255 -180824098 - L1ME1 LINE L1 -55 6111 5889 951 170 33 33 chr1 61840255 61840467 -180823886 - L1PA15 LINE L1 -9 6156 5945 1688 240 34 46 chr1 61840467 61840829 -180823524 - L1ME1 LINE L1 -277 5889 5535 272 214 0 0 chr1 61840851 61840907 -180823446 - MIR SINE MIR -79 129 74 239 243 46 139 chr1 61840989 61841162 -180823191 - MIR SINE MIR -71 191 35 217 219 0 31 chr1 61841754 61841850 -180822503 + A-rich Low_complexity Low_complexity 5 97 0 336 324 141 12 chr1 61842314 61842484 -180821869 + MIR SINE MIR 28 219 -43 766 207 46 27 chr1 61842983 61843211 -180821142 + MIR SINE MIR 37 261 -1 185 288 38 38 chr1 61843256 61843336 -180821017 - L2 LINE L2 -86 3227 3148 3895 152 5 34 chr1 61843367 61843584 -180820769 - L1P5 LINE L1 -612 5539 5317 2284 118 0 3 chr1 61843584 61843889 -180820464 - AluSq SINE Alu -9 304 1 3895 152 5 34 chr1 61843889 61844756 -180819597 - L1P5 LINE L1 -834 5317 4479 1739 102 11 0 chr1 61844742 61845006 -180819347 + L1P5 LINE L1 5525 5791 -360 * 422 133 6 69 chr1 61845013 61845186 -180819167 + (TA)n Simple_repeat Simple_repeat 1 162 0 371 138 26 85 chr1 61845228 61845417 -180818936 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 407 276 59 6 chr1 61845424 61845594 -180818759 + (TATG)n Simple_repeat Simple_repeat 2 180 0 350 156 17 72 chr1 61845626 61845806 -180818547 + (TATATG)n Simple_repeat Simple_repeat 1 170 0 439 121 15 111 chr1 61845809 61846007 -180818346 + (TA)n Simple_repeat Simple_repeat 1 179 0 441 129 11 70 chr1 61846023 61846209 -180818144 + (TA)n Simple_repeat Simple_repeat 1 175 0 208 174 11 82 chr1 61846224 61846408 -180817945 + (CATATA)n Simple_repeat Simple_repeat 3 173 0 247 236 31 55 chr1 61846482 61846609 -180817744 + (TATATG)n Simple_repeat Simple_repeat 2 125 0 * 420 192 0 96 chr1 61846520 61846804 -180817549 + (TA)n Simple_repeat Simple_repeat 1 256 0 321 177 10 62 chr1 61846805 61846901 -180817452 + L1MC4 LINE L1 6613 6703 -1339 339 149 5 82 chr1 61846930 61847124 -180817229 + (TA)n Simple_repeat Simple_repeat 2 180 0 512 112 32 56 chr1 61847183 61847526 -180816827 + (TA)n Simple_repeat Simple_repeat 1 334 0 242 116 50 55 chr1 61847560 61847741 -180816612 + (TA)n Simple_repeat Simple_repeat 1 180 0 455 87 40 69 chr1 61847760 61848044 -180816309 + (TA)n Simple_repeat Simple_repeat 1 275 0 188 46 15 92 chr1 61848067 61848132 -180816221 + (TA)n Simple_repeat Simple_repeat 1 60 0 1170 81 17 6 chr1 61848132 61848306 -180816047 - L1PB2 LINE L1 -199 5952 5777 7682 58 18 0 chr1 61848454 61849491 -180814862 + L1P LINE L1 220 1275 -4871 9074 32 2 0 chr1 61849591 61850775 -180813578 + L1P LINE L1 2369 3554 -2592 225 209 39 31 chr1 61851254 61851383 -180812970 + (TA)n Simple_repeat Simple_repeat 2 131 0 199 306 105 16 chr1 61851431 61851555 -180812798 + MIR SINE MIR 104 238 -24 236 345 109 9 chr1 61851723 61851833 -180812520 + MIR SINE MIR 123 243 -19 689 365 51 23 chr1 61852747 61853319 -180811034 - L2 LINE L2 -1021 2293 1706 265 31 0 0 chr1 61853574 61853606 -180810747 + MLT1B LTR MaLR 1 32 -358 501 80 47 60 chr1 61853727 61854028 -180810325 + (TA)n Simple_repeat Simple_repeat 1 297 0 2290 99 8 47 chr1 61854033 61854364 -180809989 + L1PB2 LINE L1 5782 6098 -53 2086 146 0 0 chr1 61854364 61854666 -180809687 + AluSq SINE Alu 9 310 -3 2290 99 8 47 chr1 61854666 61854717 -180809636 + L1PB2 LINE L1 6098 6149 -2 31 68 0 0 chr1 61854717 61854776 -180809577 + AT_rich Low_complexity Low_complexity 1 59 0 402 39 0 0 chr1 61854819 61854871 -180809482 + (TG)n Simple_repeat Simple_repeat 2 53 0 582 290 21 16 chr1 61855102 61855295 -180809058 - MER20 DNA MER1_type -25 194 1 281 383 8 31 chr1 61855298 61855426 -180808927 - MIR SINE MIR -55 153 29 257 198 206 24 chr1 61856139 61856265 -180808088 + MLT1J2 LTR MaLR 1 149 -301 251 211 25 0 chr1 61856310 61856382 -180807971 + MLT1J2 LTR MaLR 263 322 -128 404 245 19 50 chr1 61856714 61856873 -180807480 + MIR SINE MIR 102 255 -7 358 266 46 28 chr1 61857081 61857190 -180807163 + MIR3 SINE MIR 92 202 -6 378 214 36 36 chr1 61857473 61857613 -180806740 + CT-rich Low_complexity Low_complexity 5 144 0 1729 197 0 17 chr1 61858726 61859026 -180805327 - AluJo SINE Alu -17 295 1 201 304 80 40 chr1 61859109 61859234 -180805119 + L2 LINE L2 3159 3288 -25 1359 280 53 30 chr1 61859437 61859944 -180804409 + LTR33 LTR ERVL 1 519 -2 430 304 7 7 chr1 61860128 61860263 -180804090 - L2 LINE L2 -1 3312 3178 232 300 30 20 chr1 61860634 61860734 -180803619 - MIR SINE MIR -59 203 103 21 36 0 0 chr1 61861134 61861162 -180803191 + AT_rich Low_complexity Low_complexity 1 28 0 1370 155 0 5 chr1 61861358 61861564 -180802789 - L1PB3 LINE L1 -3 6151 5947 5942 114 12 16 chr1 61861580 61862435 -180801918 - L1PA16 LINE L1 0 6166 5309 2285 74 0 55 chr1 61862435 61862760 -180801593 - AluY SINE Alu -4 307 1 5942 114 12 16 chr1 61862760 61863708 -180800645 - L1PA16 LINE L1 -857 5309 4379 857 104 28 42 chr1 61863724 61863868 -180800485 - L1PB1 LINE L1 0 6151 6010 8994 254 41 29 chr1 61863868 61867126 -180797227 - L1PA16 LINE L1 -492 5678 2079 7330 60 15 0 chr1 61867126 61868212 -180796141 - L1PA6 LINE L1 -3 6151 5066 8994 254 41 29 chr1 61868212 61868494 -180795859 - L1PA16 LINE L1 -4091 2079 1802 623 322 78 11 chr1 61868589 61868965 -180795388 + LTR16A1 LTR ERVL 72 453 -4 627 192 58 13 chr1 61868974 61869130 -180795223 - L1M4 LINE L1 -1528 4618 4456 3318 139 10 2 chr1 61869137 61869640 -180794713 + MER7C DNA MER2_type 2 508 -94 21 36 0 0 chr1 61869640 61869668 -180794685 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 61869702 61869734 -180794619 + AT_rich Low_complexity Low_complexity 1 32 0 576 239 16 66 chr1 61869734 61869977 -180794376 - L1M4 LINE L1 -1820 4326 4096 246 317 56 21 chr1 61870758 61870900 -180793453 - MIR SINE MIR -30 232 86 374 288 109 22 chr1 61870963 61871147 -180793206 + L3 LINE CR1 1213 1412 -165 335 275 66 52 chr1 61871568 61871779 -180792574 - L2 LINE L2 -339 2975 2762 1149 271 51 32 chr1 61872646 61873081 -180791272 + LTR33 LTR ERVL 24 466 -55 269 316 108 63 chr1 61873205 61873521 -180790832 + L2 LINE L2 2597 2926 -388 571 272 57 13 chr1 61873581 61873739 -180790614 - MIR SINE MIR -67 195 31 232 293 53 105 chr1 61873759 61873892 -180790461 + L2 LINE L2 2983 3108 -164 327 294 101 0 chr1 61874160 61874269 -180790084 - L2 LINE L2 -4 3309 3190 220 214 0 0 chr1 61874799 61874841 -180789512 - MIR SINE MIR -62 146 105 5683 109 68 2 chr1 61874841 61875733 -180788620 - L1P LINE L1 -2805 3341 2391 241 223 0 22 chr1 61875743 61875800 -180788553 - MIR SINE MIR -138 70 16 1069 224 0 0 chr1 61875804 61876009 -180788344 + MER3 DNA MER1_type 1 205 -4 229 180 180 16 chr1 61876190 61876251 -180788102 + LTR11 LTR ERV 422 492 -192 203 331 56 28 chr1 61876463 61876605 -180787748 - MIR SINE MIR -57 205 60 456 283 25 0 chr1 61877291 61877411 -180786942 - MIR3 SINE MIR -14 194 72 2567 57 0 0 chr1 61877429 61877730 -180786623 + AluY SINE Alu 1 301 -10 331 305 120 0 chr1 61878079 61878246 -180786107 - MIR SINE MIR 0 262 76 259 308 222 0 chr1 61878249 61878366 -180785987 - L2 LINE L2 0 3313 3171 752 238 40 60 chr1 61878526 61878774 -180785579 - MIR SINE MIR -1 261 19 1369 257 127 30 chr1 61879533 61880045 -180784308 - MLT1G1 LTR MaLR -5 533 1 628 287 116 10 chr1 61880197 61880490 -180783863 - LTR16A LTR ERVL -2 448 125 189 333 111 8 chr1 61881262 61881379 -180782974 + MIR SINE MIR 103 231 -31 467 244 135 13 chr1 61881529 61881689 -180782664 + MIR SINE MIR 53 230 -32 318 272 122 55 chr1 61881987 61882216 -180782137 + MIR SINE MIR 18 262 0 393 259 96 30 chr1 61883247 61883413 -180780940 - MIR SINE MIR -75 187 11 491 328 17 11 chr1 61883662 61883839 -180780514 - MER5B DNA MER1_type 0 178 1 195 129 0 0 chr1 61884426 61884457 -180779896 + (TG)n Simple_repeat Simple_repeat 2 32 0 241 231 0 46 chr1 61884464 61884529 -180779824 + L2 LINE L2 3252 3313 0 1198 210 5 5 chr1 61884597 61884816 -180779537 - MER58A DNA MER1_type -5 219 1 322 256 161 18 chr1 61884847 61885015 -180779338 - MER117 DNA MER1_type -1 196 5 197 273 80 34 chr1 61885056 61885144 -180779209 + MIR SINE MIR 32 123 -139 363 269 85 14 chr1 61885794 61885935 -180778418 - MIR SINE MIR -10 252 102 291 112 0 8 chr1 61885979 61886030 -180778323 - MLT2C2 LTR ERVL -8 456 417 256 289 0 31 chr1 61886030 61886127 -180778226 + L1MC4 LINE L1 6615 6708 -1334 1028 185 0 0 chr1 61886136 61886309 -180778044 - MLT2C2 LTR ERVL -54 410 238 432 293 167 60 chr1 61886702 61887020 -180777333 + L2 LINE L2 2909 3260 -12 1883 166 88 15 chr1 61887563 61887973 -180776380 - MER101 LTR ERV1 -24 450 11 1884 196 150 0 chr1 61888168 61888709 -180775644 - MER114 LTR ERV -6 642 21 1778 204 22 30 chr1 61890395 61890763 -180773590 - MLT1A1 LTR MaLR 0 365 1 248 333 0 14 chr1 61891169 61891241 -180773112 - L2 LINE L2 -993 2321 2251 253 250 15 15 chr1 61891993 61892061 -180772292 - MLT1K LTR MaLR 0 588 521 600 311 14 24 chr1 61892553 61892762 -180771591 - MLT1I LTR MaLR -109 300 94 1069 224 43 56 chr1 61893303 61893690 -180770663 + MLT2B1 LTR ERVL 1 480 -40 255 150 0 50 chr1 61893735 61893795 -180770558 + MLT2B1 LTR ERVL 464 520 0 3183 70 5 0 chr1 61893920 61894307 -180770046 - L1PA7 LINE L1 -1 6153 5765 305 305 100 37 chr1 61894419 61894609 -180769744 - MIR SINE MIR -52 210 9 28 86 0 0 chr1 61895228 61895298 -180769055 + AT_rich Low_complexity Low_complexity 1 70 0 1351 292 26 8 chr1 61895360 61895751 -180768602 + LTR16A LTR ERVL 43 440 -10 206 266 47 16 chr1 61895975 61896039 -180768314 - MIR SINE MIR -135 127 62 192 143 16 63 chr1 61896393 61896456 -180767897 + GA-rich Low_complexity Low_complexity 5 64 0 229 257 40 14 chr1 61898629 61898703 -180765650 + CT-rich Low_complexity Low_complexity 1 76 0 343 321 18 24 chr1 61898703 61898868 -180765485 - L2 LINE L2 -25 3288 3125 382 222 26 60 chr1 61899387 61899504 -180764849 + MIR3 SINE MIR 87 199 -9 369 357 32 13 chr1 61900003 61900160 -180764193 - MIR SINE MIR -77 185 26 302 204 97 117 chr1 61901317 61901513 -180762840 - L2 LINE L2 -97 3216 3025 22 0 0 0 chr1 61901525 61901547 -180762806 + AT_rich Low_complexity Low_complexity 1 22 0 224 316 79 0 chr1 61901602 61901678 -180762675 - MIR SINE MIR -79 129 48 195 139 0 0 chr1 61902548 61902584 -180761769 + (T)n Simple_repeat Simple_repeat 1 36 0 215 312 108 0 chr1 61903383 61903476 -180760877 + MIR SINE MIR 50 152 -56 1298 254 96 31 chr1 61903925 61904373 -180759980 + MLT1H LTR MaLR 73 549 0 338 265 0 94 chr1 61904530 61904647 -180759706 + MER91C DNA MER1_type 2 107 -33 208 259 0 35 chr1 61904839 61904897 -180759456 + MIR3 SINE MIR 145 200 -8 243 328 0 0 chr1 61905380 61905447 -180758906 + MIR SINE MIR 32 98 -110 * 435 289 33 8 chr1 61905444 61905565 -180758788 - MER5B DNA MER1_type -53 125 2 237 336 44 35 chr1 61905565 61905666 -180758687 + MIR SINE MIR 103 204 -58 250 300 146 0 chr1 61906121 61906231 -180758122 - L2 LINE L2 -3 3269 3144 193 362 103 39 chr1 61906366 61906598 -180757755 + L2 LINE L2 2731 2977 -337 324 348 43 30 chr1 61906661 61906825 -180757528 + L2 LINE L2 2925 3090 -182 203 288 311 0 chr1 61907390 61907522 -180756831 + MIR3 SINE MIR 28 200 -8 199 351 13 0 chr1 61907762 61907839 -180756514 + L2 LINE L2 2895 2972 -300 317 321 23 38 chr1 61908574 61908705 -180755648 + MIR SINE MIR 18 146 -116 201 365 0 0 chr1 61909790 61909853 -180754500 + (CTG)n Simple_repeat Simple_repeat 2 64 0 * 245 303 0 0 chr1 61909809 61909875 -180754478 + (CTA)n Simple_repeat Simple_repeat 1 66 0 352 278 31 34 chr1 61909888 61910085 -180754268 + MIR SINE MIR 3 253 -9 189 298 70 35 chr1 61910768 61910882 -180753471 - L2 LINE L2 -606 2708 2591 1741 189 17 3 chr1 61910882 61911184 -180753169 - ERVL LTR ERVL -2106 3658 3353 237 258 124 0 chr1 61911503 61911600 -180752753 - L2 LINE L2 -222 3050 2942 259 328 52 81 chr1 61912151 61912520 -180751833 + L2 LINE L2 2872 3229 -43 398 328 67 17 chr1 61912723 61912903 -180751450 + MIR SINE MIR 20 208 -54 1742 149 3 47 chr1 61913660 61913961 -180750392 - AluSx SINE Alu -19 293 6 1034 180 115 25 chr1 61913969 61914169 -180750184 + MER20 DNA MER1_type 1 218 -1 651 76 0 0 chr1 61914331 61914410 -180749943 + AluSc SINE Alu 213 291 -18 320 317 103 14 chr1 61914410 61914555 -180749798 - MIR SINE MIR -91 171 14 184 341 11 23 chr1 61915326 61915414 -180748939 - MIR3 SINE MIR -23 185 99 237 394 10 10 chr1 61915780 61915879 -180748474 + MIR SINE MIR 36 134 -128 200 277 36 12 chr1 61916339 61916422 -180747931 + L3 LINE CR1 931 1015 -562 213 347 21 0 chr1 61916516 61916611 -180747742 + L2 LINE L2 2370 2466 -848 245 359 103 28 chr1 61916791 61917178 -180747175 - L2 LINE L2 -475 2839 2424 203 337 64 48 chr1 61917168 61917355 -180746998 + L3 LINE CR1 1197 1386 -191 * 219 309 40 48 chr1 61917569 61917695 -180746658 + MIR3 SINE MIR 39 163 -45 315 263 62 0 chr1 61917785 61917865 -180746488 - MIR SINE MIR -73 189 105 314 293 71 0 chr1 61918183 61918282 -180746071 + L2 LINE L2 3162 3267 -5 1206 270 53 46 chr1 61918386 61918420 -180745933 - L2 LINE L2 -922 2392 2360 2401 97 3 0 chr1 61918420 61918731 -180745622 - AluSx SINE Alu 0 312 1 1206 270 53 46 chr1 61918731 61919222 -180745131 - L2 LINE L2 -954 2360 1863 641 301 77 54 chr1 61919279 61919671 -180744682 + LTR33A LTR ERVL 1 401 -122 365 251 65 32 chr1 61920404 61920521 -180743832 + LTR33 LTR ERVL 281 404 -117 1311 78 45 0 chr1 61920521 61920700 -180743653 + MLT2A2 LTR ERVL 1 187 -266 * 1447 86 0 0 chr1 61920697 61920883 -180743470 + MLT2A1 LTR ERVL 219 404 -40 202 179 15 15 chr1 61920892 61920959 -180743394 + (TA)n Simple_repeat Simple_repeat 1 67 0 921 105 19 2 chr1 61921071 61921201 -180743152 - MLT2A1 LTR ERVL -40 475 280 777 51 0 0 chr1 61921199 61921297 -180743056 - MLT2A1 LTR ERVL -346 98 1 * 365 251 65 32 chr1 61921297 61921414 -180742939 - LTR33 LTR ERVL -117 404 281 538 167 15 0 chr1 61921512 61921717 -180742636 + (TA)n Simple_repeat Simple_repeat 1 208 0 5089 78 8 6 chr1 61921717 61922375 -180741978 + HERVL-A1 LTR ERVL 643 1301 -4353 33394 71 15 16 chr1 61922814 61927159 -180737194 + HERVL-A1 LTR ERVL 1312 5652 -2 3090 95 30 23 chr1 61927161 61927602 -180736751 + MLT2A1 LTR ERVL 1 444 0 454 296 72 0 chr1 61928253 61928405 -180735948 + MER103 DNA DNA 3 165 -1 2618 98 24 27 chr1 61928461 61928837 -180735516 - THE1C LTR MaLR 0 375 1 458 273 187 2 chr1 61928976 61929195 -180735158 + MIR SINE MIR 3 251 -11 180 111 0 0 chr1 61930669 61930696 -180733657 + (TA)n Simple_repeat Simple_repeat 1 27 0 754 230 70 16 chr1 61931472 61931659 -180732694 - L1PA16 LINE L1 -24 6142 5946 180 324 29 29 chr1 61931785 61931853 -180732500 + L2 LINE L2 2970 3037 -235 6913 82 11 6 chr1 61931990 61933221 -180731132 - L1PA10 LINE L1 -5 6163 4927 961 317 136 12 chr1 61933221 61933890 -180730463 + L2 LINE L2 1644 2395 -919 250 229 67 25 chr1 61934496 61934604 -180729749 - MIR SINE MIR -41 221 47 321 44 22 0 chr1 61934846 61934891 -180729462 + MADE1 DNA Mariner 35 80 0 291 325 0 43 chr1 61935241 61935358 -180728995 + L2 LINE L2 3139 3250 -22 263 255 46 59 chr1 61935498 61935651 -180728702 + MIR SINE MIR 79 229 -33 221 56 0 28 chr1 61935685 61935721 -180728632 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3329 41 0 3 chr1 61935721 61936112 -180728241 - L1PA3 LINE L1 -24 6131 5742 335 169 0 4 chr1 61936112 61936175 -180728178 - Alu SINE Alu -255 48 1 378 343 56 0 chr1 61936689 61936797 -180727556 - MER81 DNA DNA 0 114 1 1179 249 64 34 chr1 61936828 61937154 -180727199 + LTR16C LTR ERVL 148 483 -8 1363 182 32 122 chr1 61937476 61937877 -180726476 - MLT1A1 LTR MaLR 0 365 1 7711 225 45 33 chr1 61937877 61939590 -180724763 - MLT1A1-int LTR MaLR 0 1735 2 1330 198 28 104 chr1 61939591 61939986 -180724367 - MLT1A1 LTR MaLR 0 365 1 1278 219 108 31 chr1 61940276 61940601 -180723752 + MLT1F1 LTR MaLR 217 566 -1 944 223 30 0 chr1 61941314 61941480 -180722873 - FAM SINE Alu -4 171 1 2335 118 0 0 chr1 61941500 61941813 -180722540 - AluSq SINE Alu 0 313 1 21 0 0 0 chr1 61942442 61942463 -180721890 + AT_rich Low_complexity Low_complexity 1 21 0 194 262 24 0 chr1 61944213 61944255 -180720098 - L2 LINE L2 -10 3303 3261 352 314 107 30 chr1 61944671 61944942 -180719411 - L1M4 LINE L1 -940 5206 4915 512 252 126 103 chr1 61945115 61945301 -180719052 - L1M4 LINE L1 -1445 4701 4521 1787 141 0 47 chr1 61945301 61945621 -180718732 - AluSx SINE Alu 0 306 1 512 252 126 103 chr1 61945621 61946005 -180718348 - L1M4 LINE L1 -1625 4521 4117 457 292 65 90 chr1 61946133 61946359 -180717994 - MLT1I LTR MaLR 0 409 194 1903 173 49 35 chr1 61946359 61946728 -180717625 + MLT1A2 LTR MaLR 1 374 0 457 292 65 90 chr1 61946728 61946857 -180717496 - MLT1I LTR MaLR -215 194 63 435 336 28 83 chr1 61946957 61947317 -180717036 - L1MEd LINE L1 -5280 839 500 12228 152 57 22 chr1 61947348 61949676 -180714677 - L1M4c LINE L1 -3954 2430 21 22 0 0 0 chr1 61950321 61950343 -180714010 + AT_rich Low_complexity Low_complexity 1 22 0 279 302 54 8 chr1 61950550 61950679 -180713674 + L1ME LINE L1 567 701 -5933 1649 274 95 54 chr1 61951217 61952743 -180711610 + L1ME LINE L1 1144 2892 -3933 26716 114 103 67 chr1 61952772 61957882 -180706471 + L1P LINE L1 12 5305 -841 22 0 0 0 chr1 62158216 62158238 -180506115 + AT_rich Low_complexity Low_complexity 1 22 0 410 279 74 37 chr1 62158239 62158859 -180505494 + L1ME3A LINE L1 5376 6161 -9 241 100 0 0 chr1 62159315 62159355 -180504998 + L1MCc LINE L1 1296 1335 -5088 2612 122 35 5 chr1 62159392 62159825 -180504528 + L1MA4A LINE L1 5847 6292 -11 657 240 45 11 chr1 62160186 62160365 -180503988 + MLT1B LTR MaLR 1 185 -189 275 82 49 16 chr1 62160365 62160426 -180503927 + CT-rich Low_complexity Low_complexity 1 63 0 924 201 5 0 chr1 62160433 62160617 -180503736 + MLT1B LTR MaLR 206 390 0 406 325 60 52 chr1 62160667 62161380 -180502973 + L1MEd LINE L1 340 1058 -5061 472 263 76 35 chr1 62161401 62161572 -180502781 + L1MEd LINE L1 1034 1211 -4908 318 294 75 48 chr1 62161580 62161767 -180502586 + L1MB8 LINE L1 5531 5722 -448 300 213 228 0 chr1 62161771 62161898 -180502455 + L1MB8 LINE L1 5777 5932 -246 540 263 107 33 chr1 62162075 62162554 -180501799 - L1ME4a LINE L1 -202 5919 5351 1909 163 27 3 chr1 62162858 62163189 -180501164 + MER58B DNA MER1_type 3 341 0 2230 98 7 3 chr1 62164330 62164627 -180499726 + AluSp SINE Alu 1 298 -15 223 257 29 114 chr1 62164677 62164782 -180499571 - L2 LINE L2 0 3272 3177 * 1290 248 40 114 chr1 62164769 62165000 -180499353 - L2 LINE L2 -277 3036 2789 2434 41 0 14 chr1 62165000 62165291 -180499062 + AluY SINE Alu 25 311 0 1290 248 40 114 chr1 62165291 62165669 -180498684 - L2 LINE L2 -524 2789 2471 229 204 0 0 chr1 62165674 62165723 -180498630 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 394 369 92 21 chr1 62165725 62166267 -180498086 - L2 LINE L2 0 3272 2690 571 253 48 12 chr1 62166821 62166987 -180497366 + MIR SINE MIR 78 249 -13 320 292 64 113 chr1 62167148 62167494 -180496859 + L2 LINE L2 2934 3262 -10 364 313 97 21 chr1 62169097 62169241 -180495112 - MIR SINE MIR -77 185 31 220 298 12 36 chr1 62170449 62170533 -180493820 + L2 LINE L2 2566 2647 -667 907 259 42 4 chr1 62171215 62171451 -180492902 + MIR SINE MIR 18 262 0 220 373 16 24 chr1 62171594 62171720 -180492633 - MIR SINE MIR -118 144 20 1452 210 144 33 chr1 62173131 62173560 -180490793 - MLT1D LTR MaLR 0 505 29 301 307 115 23 chr1 62173780 62173998 -180490355 - MLT1K LTR MaLR -340 248 11 329 313 32 16 chr1 62174880 62175107 -180489246 - L3 LINE CR1 -2 1575 1301 247 284 88 10 chr1 62175217 62175319 -180489034 - MIR SINE MIR -47 215 106 726 326 69 28 chr1 62175602 62175992 -180488361 - L2 LINE L2 -357 2957 2552 358 313 45 0 chr1 62176084 62176196 -180488157 + MIR3 SINE MIR 41 157 -51 274 333 11 0 chr1 62176414 62176501 -180487852 + MIR SINE MIR 50 137 -125 755 272 58 54 chr1 62177650 62178132 -180486221 - MER113 DNA MER1_type? -34 487 4 208 352 80 35 chr1 62178173 62178372 -180485981 + MIR SINE MIR 47 254 -8 2405 101 0 0 chr1 62178373 62178681 -180485672 - AluSc SINE Alu -1 308 1 617 330 78 52 chr1 62179310 62179658 -180484695 + L2 LINE L2 2916 3272 0 307 329 133 0 chr1 62179667 62179825 -180484528 - ERVL LTR ERVL -4231 1533 1355 1200 177 37 1 chr1 62179886 62180147 -180484206 - L1MB5 LINE L1 0 6184 5911 25 108 0 0 chr1 62180646 62180748 -180483605 + AT_rich Low_complexity Low_complexity 1 102 0 198 0 0 0 chr1 62181551 62181573 -180482780 + (T)n Simple_repeat Simple_repeat 1 22 0 1278 279 42 100 chr1 62181839 62181934 -180482419 - L2 LINE L2 0 3272 3173 2063 83 0 11 chr1 62181934 62182198 -180482155 + AluSp SINE Alu 38 298 -15 1278 279 42 100 chr1 62182198 62182571 -180481782 - L2 LINE L2 -99 3173 2872 2447 45 0 7 chr1 62182571 62182860 -180481493 + AluY SINE Alu 25 311 0 1278 279 42 100 chr1 62182860 62183240 -180481113 - L2 LINE L2 -400 2872 2471 229 204 0 0 chr1 62183245 62183294 -180481059 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 394 369 92 21 chr1 62183296 62183838 -180480515 - L2 LINE L2 0 3272 2690 571 253 48 12 chr1 62184392 62184558 -180479795 + MIR SINE MIR 78 249 -13 320 292 64 113 chr1 62184719 62185065 -180479288 + L2 LINE L2 2934 3262 -10 492 277 94 40 chr1 62186528 62186856 -180477497 + L1ME3A LINE L1 2519 2864 -3282 22 0 0 0 chr1 62186942 62186964 -180477389 + AT_rich Low_complexity Low_complexity 1 22 0 410 279 74 37 chr1 62186965 62187585 -180476768 + L1ME3A LINE L1 5376 6161 -9 241 100 0 0 chr1 62188041 62188081 -180476272 + L1MCc LINE L1 1296 1335 -5088 2612 122 35 5 chr1 62188118 62188551 -180475802 + L1MA4A LINE L1 5847 6292 -11 657 240 45 11 chr1 62188912 62189091 -180475262 + MLT1B LTR MaLR 1 185 -189 275 82 49 16 chr1 62189091 62189152 -180475201 + CT-rich Low_complexity Low_complexity 1 63 0 924 201 5 0 chr1 62189159 62189343 -180475010 + MLT1B LTR MaLR 206 390 0 406 325 60 52 chr1 62189393 62190106 -180474247 + L1MEd LINE L1 340 1058 -5061 472 263 76 35 chr1 62190127 62190298 -180474055 + L1MEd LINE L1 1034 1211 -4908 318 294 75 48 chr1 62190306 62190493 -180473860 + L1MB8 LINE L1 5531 5722 -448 300 213 228 0 chr1 62190497 62190624 -180473729 + L1MB8 LINE L1 5777 5932 -246 540 261 107 33 chr1 62190801 62191280 -180473073 - L1ME4a LINE L1 -202 5919 5351 1909 163 27 3 chr1 62191584 62191915 -180472438 + MER58B DNA MER1_type 3 341 0 2211 108 3 0 chr1 62193056 62193343 -180471010 + AluSp SINE Alu 1 288 -25 1499 221 21 0 chr1 62193831 62194112 -180470241 + AluSx SINE Alu 1 287 -25 215 97 0 0 chr1 62194114 62194145 -180470208 + (GGAGAA)n Simple_repeat Simple_repeat 1 31 0 661 181 0 19 chr1 62194145 62194305 -180470048 + G-rich Low_complexity Low_complexity 1 157 0 479 17 17 0 chr1 62194390 62194450 -180469903 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 290 343 110 0 chr1 62195326 62195472 -180468881 + MIR SINE MIR 63 224 -38 297 296 217 0 chr1 62195691 62195806 -180468547 + L2 LINE L2 3133 3272 0 2102 101 3 14 chr1 62196370 62196658 -180467695 - AluSx SINE Alu -15 297 13 661 259 209 8 chr1 62197346 62197482 -180466871 - L2 LINE L2 -1 3312 3205 218 79 0 26 chr1 62197482 62197520 -180466833 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 661 259 209 8 chr1 62197520 62197646 -180466707 - L2 LINE L2 -108 3205 2997 199 333 67 0 chr1 62197761 62197821 -180466532 - L2 LINE L2 -188 3084 3021 440 282 8 17 chr1 62198922 62199039 -180465314 - MIR SINE MIR -56 152 37 208 237 220 0 chr1 62199641 62199700 -180464653 - L2 LINE L2 0 3313 3242 292 312 80 40 chr1 62199719 62199844 -180464509 - L2 LINE L2 -5 3267 3138 464 328 39 6 chr1 62201130 62201310 -180463043 - LTR16C LTR ERVL -1 490 305 330 369 76 10 chr1 62201796 62201994 -180462359 + MIR SINE MIR 3 213 -49 1927 143 32 0 chr1 62202685 62203000 -180461353 - MSTA LTR MaLR -103 325 1 361 313 81 0 chr1 62203622 62203801 -180460552 - MIR SINE MIR -59 203 16 283 341 0 0 chr1 62203948 62204030 -180460323 - L3 LINE CR1 -5 1572 1491 625 291 24 33 chr1 62204208 62204418 -180459935 - MIR SINE MIR -41 221 14 223 190 86 17 chr1 62204445 62204503 -180459850 - L3 LINE CR1 -514 1063 1002 229 326 90 0 chr1 62204938 62205027 -180459326 - MIR3 SINE MIR -43 165 69 258 315 141 24 chr1 62205134 62205340 -180459013 - MIR SINE MIR -13 249 12 182 170 0 21 chr1 62205355 62205402 -180458951 + CT-rich Low_complexity Low_complexity 1 46 0 195 299 179 67 chr1 62205402 62205551 -180458802 + L2 LINE L2 2368 2499 -815 2227 93 0 0 chr1 62205551 62205869 -180458484 + AluY SINE Alu 1 318 0 195 299 179 67 chr1 62205869 62206092 -180458261 + L2 LINE L2 2499 2783 -531 904 251 107 50 chr1 62206113 62206476 -180457877 - MSTD LTR MaLR -12 384 1 7078 68 142 3 chr1 62206491 62207564 -180456789 - MER11B LTR ERVK -14 1222 1 342 319 18 9 chr1 62207858 62207971 -180456382 + L2 LINE L2 3182 3295 -18 192 97 0 0 chr1 62207976 62208007 -180456346 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 264 297 0 0 chr1 62208440 62208504 -180455849 - MIR3 SINE MIR -22 186 123 225 255 112 56 chr1 62208508 62208704 -180455649 + L1MEd LINE L1 12 218 -5901 459 226 151 70 chr1 62209280 62209479 -180454874 + MER58C DNA MER1_type 1 215 0 26 74 0 0 chr1 62210156 62210210 -180454143 + AT_rich Low_complexity Low_complexity 1 54 0 213 293 38 38 chr1 62210480 62210586 -180453767 - MIR SINE MIR -78 130 25 413 329 38 52 chr1 62210745 62210955 -180453398 + MIR SINE MIR 45 251 -11 874 216 62 0 chr1 62211250 62211444 -180452909 + MER58A DNA MER1_type 19 224 0 244 327 19 10 chr1 62212044 62212148 -180452205 - L2 LINE L2 -457 2857 2753 579 249 174 9 chr1 62212274 62212692 -180451661 + LTR33A LTR ERVL 32 519 -4 275 310 14 0 chr1 62212736 62212807 -180451546 + L2 LINE L2 3196 3267 -5 374 313 67 0 chr1 62213593 62213727 -180450626 + MIR SINE MIR 104 246 -16 245 289 193 26 chr1 62214324 62214438 -180449915 + MIR3 SINE MIR 8 140 -68 205 188 42 21 chr1 62214876 62214924 -180449429 + GA-rich Low_complexity Low_complexity 2 50 0 313 351 160 0 chr1 62215089 62215277 -180449076 + MIR SINE MIR 20 237 -25 384 77 0 0 chr1 62216228 62216280 -180448073 + (TA)n Simple_repeat Simple_repeat 1 52 0 524 304 53 25 chr1 62216371 62216614 -180447739 - MIR SINE MIR 0 262 13 35 24 0 0 chr1 62217052 62217094 -180447259 + AT_rich Low_complexity Low_complexity 1 42 0 369 262 176 21 chr1 62217106 62217293 -180447060 - MIR SINE MIR -5 257 42 245 186 0 0 chr1 62217920 62217963 -180446390 + T-rich Low_complexity Low_complexity 3 45 0 374 186 12 0 chr1 62217964 62218050 -180446303 + CT-rich Low_complexity Low_complexity 1 87 0 422 254 18 35 chr1 62219571 62219685 -180444668 - MER5A DNA MER1_type -53 136 25 9386 159 24 4 chr1 62220087 62222186 -180442167 + L1PA14 LINE L1 1 2668 -4913 * 16737 181 10 13 chr1 62222180 62222395 -180441958 + L1PA14 LINE L1 3071 3285 -4314 2232 112 0 3 chr1 62222395 62222698 -180441655 + AluSc SINE Alu 1 302 -7 16737 181 10 13 chr1 62222698 62222862 -180441491 + L1PA14 LINE L1 3285 3448 -4151 1938 145 0 0 chr1 62222862 62223144 -180441209 + AluSx SINE Alu 1 282 -30 303 28 0 0 chr1 62223147 62223183 -180441170 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 2321 115 0 6 chr1 62223184 62223496 -180440857 + AluSg SINE Alu 1 310 0 16737 181 10 13 chr1 62223496 62227640 -180436713 + L1PA14 LINE L1 3449 7583 -16 704 316 68 0 chr1 62227659 62227896 -180436457 - MIR SINE MIR -2 260 8 427 224 98 7 chr1 62227904 62228047 -180436306 - MER103 DNA DNA -10 156 1 507 206 108 0 chr1 62228237 62228339 -180436014 - MER5A DNA MER1_type -76 113 1 181 314 0 0 chr1 62228344 62228395 -180435958 + MIR SINE MIR 88 138 -70 484 252 34 0 chr1 62228415 62228534 -180435819 - L2 LINE L2 0 3313 3191 233 266 241 0 chr1 62229089 62229168 -180435185 - L2 LINE L2 -1 3271 3174 203 360 72 8 chr1 62229162 62229287 -180435066 + L2 LINE L2 3181 3313 0 * 25 0 0 0 chr1 62229735 62229760 -180434593 + AT_rich Low_complexity Low_complexity 1 25 0 411 250 39 23 chr1 62229786 62229914 -180434439 + Charlie8 DNA MER1_type 127 256 -2161 6019 125 87 48 chr1 62230021 62231206 -180433147 - Tigger3b DNA MER2_type 0 1231 1 1253 126 53 5 chr1 62231647 62231854 -180432499 - THE1A LTR MaLR 0 355 139 1017 117 9 7 chr1 62232120 62232277 -180432076 - THE1A LTR MaLR -214 141 1 12040 88 5 0 chr1 62232277 62233850 -180430503 - THE1A-int LTR MaLR 0 1580 1 2207 127 11 3 chr1 62233852 62234199 -180430154 - THE1A LTR MaLR -5 350 1 312 309 73 8 chr1 62234394 62234517 -180429836 - MIR3 SINE MIR -15 193 63 536 107 0 0 chr1 62234518 62234602 -180429751 + MSTA LTR MaLR 1 84 -344 3312 73 2 0 chr1 62234612 62235048 -180429305 - LTR3b LTR ERVK 0 437 1 1841 137 58 12 chr1 62235048 62235380 -180428973 + MSTA LTR MaLR 81 428 0 2099 125 0 0 chr1 62236021 62236310 -180428043 - AluSx SINE Alu -23 289 1 2682 236 16 0 chr1 62236438 62237048 -180427305 - MER82 DNA MER2_type -9 644 25 949 283 31 17 chr1 62237084 62237377 -180426976 + L2 LINE L2 3017 3313 0 2729 121 34 2 chr1 62237393 62237808 -180426545 + MSTA LTR MaLR 1 428 0 1477 200 121 88 chr1 62238176 62238712 -180425641 + MLT2B3 LTR ERVL 1 554 0 297 328 94 8 chr1 62239277 62239405 -180424948 - MIR SINE MIR -122 140 2 242 349 43 0 chr1 62239689 62239792 -180424561 - MIR SINE MIR -64 144 48 301 354 44 25 chr1 62240727 62240885 -180423468 - MIR SINE MIR -50 212 52 21 36 0 0 chr1 62241017 62241045 -180423308 + AT_rich Low_complexity Low_complexity 1 28 0 1801 176 0 14 chr1 62241045 62241335 -180423018 + AluJb SINE Alu 17 302 -10 763 283 48 4 chr1 62241379 62241630 -180422723 + MIR SINE MIR 1 262 0 630 257 20 52 chr1 62241642 62241891 -180422462 + Charlie8 DNA MER1_type 19 259 -2158 1536 179 124 101 chr1 62242556 62243153 -180421200 + MER4B-int LTR ERV1 5466 6076 -682 1866 144 79 3 chr1 62243153 62243493 -180420860 + LTR47A LTR ERVL 1 366 -86 250 330 195 27 chr1 62243764 62243985 -180420368 + L2 LINE L2 3005 3262 -10 25 0 0 0 chr1 62244707 62244732 -180419621 + AT_rich Low_complexity Low_complexity 1 25 0 484 314 58 23 chr1 62245375 62245684 -180418669 - LTR16C LTR ERVL 0 491 172 791 331 31 16 chr1 62245937 62246360 -180417993 - ERVL LTR ERVL -461 5303 4875 271 331 68 15 chr1 62246422 62246555 -180417798 - LTR16C LTR ERVL 0 491 352 181 260 151 0 chr1 62247206 62247279 -180417074 + MIR3 SINE MIR 10 93 -115 478 182 224 7 chr1 62247414 62247557 -180416796 - MLT1B LTR MaLR -216 174 1 1546 78 16 47 chr1 62247759 62248015 -180416338 - L1PA8 LINE L1 0 6172 5925 4952 71 22 0 chr1 62248015 62248814 -180415539 + L1PA8 LINE L1 5143 5954 -177 220 167 21 21 chr1 62248996 62249044 -180415309 + CT-rich Low_complexity Low_complexity 4 51 0 371 348 43 0 chr1 62249794 62249958 -180414395 + MIR3 SINE MIR 38 208 0 1734 219 31 6 chr1 62250091 62250447 -180413906 - MLT1A1 LTR MaLR 0 365 1 1944 160 19 11 chr1 62250452 62250821 -180413532 - MLT1A1-int LTR MaLR -6 1729 1358 794 238 0 0 chr1 62250823 62250983 -180413370 - FRAM SINE Alu -16 160 1 4895 235 54 12 chr1 62250985 62252260 -180412093 - MLT1A1-int LTR MaLR -372 1363 1 1602 236 28 0 chr1 62252263 62252615 -180411738 - MLT1A1 LTR MaLR -3 362 1 238 218 0 18 chr1 62253995 62254050 -180410303 + CT-rich Low_complexity Low_complexity 1 54 0 1189 199 83 57 chr1 62255058 62255105 -180409248 - MLT2C1 LTR ERVL 0 397 353 845 74 8 0 chr1 62255105 62255227 -180409126 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 1189 199 83 57 chr1 62255227 62255566 -180408787 - MLT2C1 LTR ERVL -44 353 1 482 69 69 0 chr1 62256936 62257008 -180407345 - Tigger1 DNA MER2_type -1500 918 842 217 298 0 18 chr1 62257426 62257483 -180406870 - L2 LINE L2 -211 3061 3006 24 53 0 0 chr1 62257617 62257655 -180406698 + AT_rich Low_complexity Low_complexity 1 38 0 6065 125 44 5 chr1 62257895 62258910 -180405443 - Tigger1 DNA MER2_type 0 2418 1364 202 29 57 0 chr1 62258911 62258946 -180405407 + (TA)n Simple_repeat Simple_repeat 2 38 0 6952 39 7 1 chr1 62258946 62260268 -180404085 - L1PA5 LINE L1 -20 6134 4808 5977 37 0 3 chr1 62260270 62261032 -180403321 + L1PA5 LINE L1 4061 4820 -1326 8455 122 26 2 chr1 62261032 62262375 -180401978 - Tigger1 DNA MER2_type -1043 1375 1 258 156 0 0 chr1 62262409 62262454 -180401899 + (TA)n Simple_repeat Simple_repeat 2 46 0 359 386 27 46 chr1 62263458 62263717 -180400636 - L2 LINE L2 0 3272 3019 313 293 121 0 chr1 62263919 62264059 -180400294 + MIR SINE MIR 70 226 -36 250 338 0 53 chr1 62264976 62265109 -180399244 - L2 LINE L2 -233 3039 2914 205 336 36 18 chr1 62265172 62265282 -180399071 - MIR SINE MIR -111 151 40 367 321 45 93 chr1 62265664 62265954 -180398399 - L2 LINE L2 0 3272 2997 2557 187 35 20 chr1 62265957 62266157 -180398196 + L1MC4 LINE L1 6971 7167 -875 1333 177 46 67 chr1 62266157 62266530 -180397823 + MLT1A1 LTR MaLR 1 365 0 2557 187 35 20 chr1 62266530 62266965 -180397388 + L1MC4 LINE L1 7167 7615 -427 21 0 0 0 chr1 62266976 62266997 -180397356 + AT_rich Low_complexity Low_complexity 1 21 0 413 303 26 19 chr1 62267087 62267242 -180397111 - MIR SINE MIR -12 250 95 922 264 91 29 chr1 62267603 62267986 -180396367 - MLT1I LTR MaLR 0 409 3 208 323 0 16 chr1 62268016 62268078 -180396275 - L2 LINE L2 -9 3263 3203 196 277 0 0 chr1 62268176 62268223 -180396130 - MIR3 SINE MIR -54 154 108 285 329 91 14 chr1 62268756 62268899 -180395454 + MIR SINE MIR 20 173 -89 338 300 64 39 chr1 62269195 62269428 -180394925 - MLT1J1 LTR MaLR -153 293 55 190 218 73 18 chr1 62270262 62270317 -180394036 - MIR SINE MIR -80 182 125 487 120 46 0 chr1 62270389 62270497 -180393856 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 645 257 91 0 chr1 62270501 62270676 -180393677 - MIR SINE MIR -70 192 2 375 287 175 18 chr1 62271251 62271452 -180392901 - MIR SINE MIR -33 229 3 327 264 44 44 chr1 62272164 62272323 -180392030 + MIR SINE MIR 75 233 -29 337 203 59 42 chr1 62274236 62274354 -180389999 - MLT1H LTR MaLR 0 549 430 246 272 40 40 chr1 62274526 62274651 -180389702 - MLT1I LTR MaLR -284 125 1 207 0 0 0 chr1 62275203 62275226 -180389127 + (CAA)n Simple_repeat Simple_repeat 2 24 0 849 182 0 6 chr1 62276479 62276660 -180387693 - L1MCa LINE L1 -5375 1051 872 626 325 40 53 chr1 62277367 62277669 -180386684 + L2 LINE L2 2965 3262 -10 213 213 0 0 chr1 62277723 62277770 -180386583 + GA-rich Low_complexity Low_complexity 2 48 0 231 261 0 0 chr1 62277977 62278023 -180386330 - MIR3 SINE MIR -48 160 115 339 254 191 46 chr1 62278434 62278607 -180385746 - MIR SINE MIR -34 228 31 203 307 189 8 chr1 62279495 62279622 -180384731 - MIR SINE MIR -40 222 73 274 400 118 8 chr1 62279959 62280332 -180384021 - L2 LINE L2 -50 3222 2809 410 289 92 13 chr1 62280510 62280738 -180383615 - MLT1L LTR MaLR -2 613 368 293 275 93 14 chr1 62281759 62281911 -180382442 + MIR3 SINE MIR 1 170 -64 202 244 0 0 chr1 62282006 62282047 -180382306 + L2 LINE L2 3265 3305 -8 200 352 80 16 chr1 62282093 62282218 -180382135 + MIR SINE MIR 97 229 -33 248 314 153 8 chr1 62282355 62282473 -180381880 + MIR3 SINE MIR 41 175 -33 207 0 0 0 chr1 62282513 62282536 -180381817 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2107 145 0 0 chr1 62283583 62283886 -180380467 + AluSx SINE Alu 1 303 -9 547 249 11 57 chr1 62284247 62284424 -180379929 - MIR SINE MIR -70 192 24 548 326 87 9 chr1 62285996 62286226 -180378127 - MIR SINE MIR -6 256 9 570 303 55 0 chr1 62286919 62287084 -180377269 - MIR SINE MIR -66 196 23 31 0 0 0 chr1 62287383 62287414 -180376939 + AT_rich Low_complexity Low_complexity 1 31 0 1018 251 124 39 chr1 62287418 62287805 -180376548 - LTR16A LTR ERVL 0 450 31 318 338 10 10 chr1 62287894 62288010 -180376343 - MIR SINE MIR -72 136 20 631 164 18 88 chr1 62288389 62288560 -180375793 + Charlie1 DNA MER1_type 1461 1619 -1142 * 3647 168 38 68 chr1 62288557 62289026 -180375327 + Charlie1 DNA MER1_type 1792 2274 -487 2501 77 0 0 chr1 62289026 62289323 -180375030 - AluY SINE Alu -14 297 1 3647 168 38 68 chr1 62289323 62289852 -180374501 + Charlie1 DNA MER1_type 2274 2760 -1 251 302 118 53 chr1 62290140 62290309 -180374044 - MIR SINE MIR -76 186 7 314 282 32 96 chr1 62290314 62290470 -180373883 - MIR3 SINE MIR -47 161 16 231 298 119 112 chr1 62290728 62291131 -180373222 - L2 LINE L2 -5 3267 2862 263 274 0 60 chr1 62291350 62291434 -180372919 + L2 LINE L2 3194 3272 0 290 304 130 9 chr1 62292863 62292978 -180371375 - L2 LINE L2 -6 3266 3138 392 332 102 73 chr1 62293022 62293771 -180370582 + L2 LINE L2 2199 2968 -346 1254 345 9 0 chr1 62294194 62294640 -180369713 + ERVL LTR ERVL 4242 4691 -1073 552 334 51 35 chr1 62294637 62295065 -180369288 + ERVL LTR ERVL 4843 5277 -487 * 410 223 54 27 chr1 62295499 62295611 -180368742 + MIR SINE MIR 40 154 -108 1794 125 46 18 chr1 62296009 62296311 -180368042 + AluSx SINE Alu 1 310 0 769 287 73 19 chr1 62296436 62296861 -180367492 + L1ME LINE L1 4489 4936 -1210 180 77 0 0 chr1 62296869 62296895 -180367458 + (TA)n Simple_repeat Simple_repeat 2 27 0 603 264 67 49 chr1 62296983 62297579 -180366774 + L1ME LINE L1 5119 5723 -447 2411 103 41 11 chr1 62297702 62298071 -180366282 + L1PA11 LINE L1 5794 6173 -1 2350 92 7 0 chr1 62298232 62298527 -180365826 - AluSp SINE Alu -16 297 1 1176 278 44 38 chr1 62298822 62299502 -180364851 - L1MDb LINE L1 -5026 1044 361 1792 193 3 0 chr1 62299646 62299941 -180364412 + AluSx SINE Alu 1 296 -16 2186 126 3 0 chr1 62299998 62300300 -180364053 + AluSx SINE Alu 1 303 -9 19232 48 53 7 chr1 62300322 62302938 -180361415 + L1P LINE L1 2 2739 -3407 5028 29 0 0 chr1 62302938 62303651 -180360702 + L1PA3 LINE L1 5569 6288 0 1338 278 66 13 chr1 62304144 62304598 -180359755 + LTR16C LTR ERVL 11 488 -3 504 273 100 15 chr1 62304652 62304831 -180359522 + MIR SINE MIR 9 196 -60 243 321 0 24 chr1 62305273 62305357 -180358996 - MIR3 SINE MIR -11 197 116 433 373 128 7 chr1 62305385 62305691 -180358662 + L3 LINE CR1 1232 1574 -3 435 355 49 34 chr1 62306050 62306458 -180357895 + LTR16B LTR ERVL 39 452 -12 1285 211 164 31 chr1 62306938 62307359 -180356994 - MLT1F LTR MaLR -63 479 3 240 239 415 0 chr1 62307360 62307490 -180356863 - MIR SINE MIR -77 185 2 344 264 92 39 chr1 62307642 62307819 -180356534 - MIR SINE MIR -58 150 6 1080 220 78 33 chr1 62307967 62308362 -180355991 - L1ME3A LINE L1 0 6170 5758 1524 217 39 0 chr1 62308363 62308695 -180355658 + Cheshire DNA MER1_type 2 346 -2074 318 164 149 0 chr1 62308693 62308760 -180355593 + Cheshire DNA MER1_type 2344 2420 0 * 1072 206 76 10 chr1 62308762 62309063 -180355290 - L1ME3A LINE L1 -407 5763 5443 304 270 151 24 chr1 62309154 62309280 -180355073 - MIR SINE MIR -119 143 2 908 226 46 14 chr1 62310287 62310504 -180353849 - MER58A DNA MER1_type 0 224 1 724 315 56 8 chr1 62311154 62311421 -180352932 - MLT1I LTR MaLR -19 390 111 689 322 27 17 chr1 62311583 62311881 -180352472 + MLT1I LTR MaLR 91 391 -18 1901 163 15 36 chr1 62312078 62312471 -180351882 - MLT1B LTR MaLR 0 390 6 2330 157 23 5 chr1 62312856 62313283 -180351070 - Tigger1 DNA MER2_type 0 2418 1984 5688 152 23 5 chr1 62313288 62314596 -180349757 - L1MA5A LINE L1 0 6297 4963 10531 129 23 1 chr1 62314601 62316318 -180348035 - Tigger1 DNA MER2_type -450 1968 214 196 284 45 0 chr1 62316582 62316649 -180347704 + MIR SINE MIR 82 151 -111 16986 131 29 17 chr1 62316660 62319499 -180344854 + L1PBa LINE L1 1 2804 -4058 2294 93 3 13 chr1 62319499 62319811 -180344542 + AluSc SINE Alu 1 309 0 16986 131 29 17 chr1 62319811 62320004 -180344349 + L1PBa LINE L1 2804 2993 -3869 2252 115 0 3 chr1 62320004 62320316 -180344037 + AluY SINE Alu 1 311 0 16986 131 29 17 chr1 62320316 62320662 -180343691 + L1PBa LINE L1 2993 3429 -3433 3521 206 4 14 chr1 62320669 62321754 -180342599 - L1P5 LINE L1 -659 5492 4419 1211 138 0 0 chr1 62321765 62321960 -180342393 - AluSg/x SINE Alu 0 308 114 1605 101 16 12 chr1 62321960 62322218 -180342135 - L1P4 LINE L1 -535 5631 5373 4406 206 15 8 chr1 62322218 62323264 -180341089 + L1P4 LINE L1 4303 5356 -790 574 285 84 45 chr1 62323275 62323679 -180340674 - L1ME LINE L1 -5601 469 50 21 0 0 0 chr1 62323949 62323970 -180340383 + AT_rich Low_complexity Low_complexity 1 21 0 352 299 87 8 chr1 62324332 62324459 -180339894 - MIR SINE MIR -21 241 105 183 37 37 0 chr1 62325167 62325194 -180339159 - L2 LINE L2 -14 3299 3272 243 241 76 0 chr1 62325627 62325706 -180338647 - L1ME4a LINE L1 -66 6055 5971 335 270 56 34 chr1 62325792 62325970 -180338383 - L1ME4a LINE L1 -4 6117 5936 1827 153 32 0 chr1 62326101 62326382 -180337971 - AluSx SINE Alu -22 290 1 232 289 26 0 chr1 62326745 62326821 -180337532 - MIR SINE MIR -1 261 184 352 309 108 49 chr1 62327137 62327425 -180336928 - L2 LINE L2 -416 2898 2594 204 313 15 0 chr1 62327530 62327597 -180336756 - L2 LINE L2 -1736 1578 1511 265 256 26 0 chr1 62327663 62327741 -180336612 + MLT1K LTR MaLR 167 246 -342 869 364 64 34 chr1 62328201 62329169 -180335184 - L2 LINE L2 -2128 1186 190 1595 167 0 0 chr1 62329258 62329608 -180334745 + AluSx SINE Alu 38 387 0 208 245 0 0 chr1 62329894 62329943 -180334410 + (TTG)n Simple_repeat Simple_repeat 1 49 0 275 235 71 12 chr1 62329965 62330050 -180334303 + MIR3 SINE MIR 114 203 -5 22 35 0 0 chr1 62330642 62330671 -180333682 + AT_rich Low_complexity Low_complexity 1 29 0 357 24 0 0 chr1 62330733 62330775 -180333578 + (CA)n Simple_repeat Simple_repeat 1 42 0 218 290 29 0 chr1 62330791 62330860 -180333493 - MIR SINE MIR -111 151 81 9120 165 22 7 chr1 62331889 62334390 -180329963 - L1PA12 LINE L1 0 6168 3620 2009 71 8 0 chr1 62334462 62334728 -180329625 - L1PA7 LINE L1 0 6154 5887 287 287 71 29 chr1 62334916 62335044 -180329309 - MIR SINE MIR -68 140 6 1146 142 16 21 chr1 62335256 62335446 -180328907 + MER5A DNA MER1_type 1 189 0 247 273 30 20 chr1 62335482 62335581 -180328772 - MER117 DNA MER1_type -91 106 7 199 333 58 25 chr1 62336422 62336542 -180327811 + MIR SINE MIR 30 153 -109 250 354 51 53 chr1 62336712 62336844 -180327509 + L2 LINE L2 794 925 -2389 1942 112 34 0 chr1 62336844 62337112 -180327241 - AluSq SINE Alu -36 277 1 250 354 51 53 chr1 62337112 62337584 -180326769 + L2 LINE L2 925 1448 -1866 4661 165 21 23 chr1 62337584 62339164 -180325189 + L1PA16 LINE L1 4534 6110 -56 276 344 198 43 chr1 62339340 62340177 -180324176 + L2 LINE L2 1746 2712 -602 183 282 0 0 chr1 62340189 62340228 -180324125 - L2 LINE L2 -18 3295 3257 192 254 0 90 chr1 62340606 62340673 -180323680 + L2 LINE L2 3179 3239 -33 544 267 0 0 chr1 62340673 62340793 -180323560 + MER58A DNA MER1_type 1 120 0 1796 166 16 19 chr1 62340853 62341166 -180323187 + AluJo SINE Alu 1 312 0 1044 200 45 121 chr1 62341206 62341626 -180322727 + MLT1B LTR MaLR 1 388 -2 203 212 0 30 chr1 62341652 62341718 -180322635 + (TTA)n Simple_repeat Simple_repeat 2 65 0 28 29 0 0 chr1 62341769 62341804 -180322549 + AT_rich Low_complexity Low_complexity 1 35 0 189 330 9 66 chr1 62341917 62342023 -180322330 - MIR SINE MIR -111 151 52 287 381 0 0 chr1 62342090 62342195 -180322158 + MIR SINE MIR 23 127 -135 1221 290 62 30 chr1 62342221 62342718 -180321635 - LTR33 LTR ERVL -6 515 3 512 358 63 48 chr1 62343501 62343772 -180320581 - L2 LINE L2 -2 3270 2996 264 380 19 0 chr1 62343879 62343987 -180320366 - MIR SINE MIR -121 141 32 276 350 51 7 chr1 62344197 62344334 -180320019 - L2 LINE L2 -593 2721 2579 262 236 236 7 chr1 62344402 62344542 -180319811 - MIR3 SINE MIR -4 204 33 2316 106 0 0 chr1 62345046 62345358 -180318995 - AluSx SINE Alu 0 312 1 322 325 44 12 chr1 62346196 62346356 -180317997 - LTR16C LTR ERVL 0 491 327 1350 231 40 40 chr1 62346496 62346916 -180317437 - LTR16C LTR ERVL 0 491 72 427 59 15 15 chr1 62347446 62347514 -180316839 + (TA)n Simple_repeat Simple_repeat 2 69 0 572 338 69 11 chr1 62348729 62349353 -180315000 - L1ME3A LINE L1 -218 5952 5293 366 23 0 0 chr1 62349370 62349413 -180314940 + (TG)n Simple_repeat Simple_repeat 2 44 0 386 265 53 8 chr1 62349413 62349545 -180314808 - L1ME3A LINE L1 -879 5267 5130 1335 96 0 11 chr1 62349565 62349743 -180314610 + AluSg/x SINE Alu 123 298 -12 243 235 0 0 chr1 62349907 62349958 -180314395 + L2 LINE L2 3210 3260 -12 446 262 33 0 chr1 62350077 62350199 -180314154 - MIR SINE MIR -74 188 63 311 176 0 88 chr1 62350984 62351075 -180313278 + MIR SINE MIR 119 201 -61 516 188 49 40 chr1 62351242 62351398 -180312955 + MSTC LTR MaLR 1 183 -274 * 602 152 15 36 chr1 62351395 62351541 -180312812 + MSTC LTR MaLR 296 428 0 575 241 125 54 chr1 62351888 62352172 -180312181 - MLT1H LTR MaLR -169 398 119 2277 114 0 0 chr1 62352172 62352471 -180311882 - AluSx SINE Alu -13 299 1 575 241 125 54 chr1 62352471 62352594 -180311759 - MLT1H LTR MaLR -448 119 6 1087 265 106 53 chr1 62352695 62353148 -180311205 - MLT1F LTR MaLR -6 536 60 270 302 12 0 chr1 62354392 62354478 -180309875 - MLT1H1-int LTR MaLR -1280 91 5 346 257 162 33 chr1 62354487 62354697 -180309656 - MLT1H1 LTR MaLR -7 548 312 950 221 33 5 chr1 62354713 62354926 -180309427 + MER20 DNA MER1_type 1 219 0 293 238 154 10 chr1 62354929 62355079 -180309274 - MIR SINE MIR -49 213 1 393 312 111 33 chr1 62355856 62356254 -180308099 - MLT1L LTR MaLR 0 615 187 230 257 29 0 chr1 62356299 62356369 -180307984 - MLT1L LTR MaLR -416 199 128 251 230 14 68 chr1 62356957 62357031 -180307322 - MIR3 SINE MIR -52 156 87 877 321 81 18 chr1 62357046 62357492 -180306861 - L3 LINE CR1 -293 1284 811 799 268 14 92 chr1 62357573 62357943 -180306410 - MER102b DNA MER1_type 0 341 1 318 341 0 0 chr1 62358075 62358166 -180306187 - MIR3 SINE MIR -21 187 97 854 169 12 137 chr1 62358271 62358520 -180305833 - MER20 DNA MER1_type 0 219 2 302 326 59 44 chr1 62358520 62358645 -180305708 - MIR3 SINE MIR -43 165 36 476 257 28 78 chr1 62358735 62358914 -180305439 + MIR SINE MIR 2 171 -91 252 86 0 0 chr1 62358930 62358965 -180305388 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1298 236 43 6 chr1 62358976 62359302 -180305051 + MER58B DNA MER1_type 3 340 -1 278 340 47 28 chr1 62359918 62360024 -180304329 - L2 LINE L2 -8 3264 3157 313 274 69 80 chr1 62362100 62362275 -180302078 - MIR3 SINE MIR -21 187 15 2414 56 0 0 chr1 62362746 62363066 -180301287 - AluY SINE Alu 0 320 1 22 0 0 0 chr1 62363079 62363101 -180301252 + AT_rich Low_complexity Low_complexity 1 22 0 234 148 0 0 chr1 62363101 62363155 -180301198 + (A)n Simple_repeat Simple_repeat 1 54 0 191 276 73 73 chr1 62363365 62363488 -180300865 + MIR SINE MIR 24 146 -62 662 170 85 13 chr1 62364367 62364520 -180299833 - MER96B DNA MER1_type? -1 416 253 25 0 0 0 chr1 62364747 62364772 -180299581 + AT_rich Low_complexity Low_complexity 1 25 0 261 236 0 0 chr1 62365173 62365228 -180299125 + CT-rich Low_complexity Low_complexity 2 56 0 1532 242 104 23 chr1 62365289 62365769 -180298584 - LTR33 LTR ERVL 0 521 3 214 175 0 0 chr1 62365949 62365989 -180298364 + (ATGGTG)n Simple_repeat Simple_repeat 3 42 0 365 254 11 22 chr1 62366000 62366181 -180298172 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 465 316 98 0 chr1 62366668 62366842 -180297511 - MIR SINE MIR -16 246 56 23 0 0 0 chr1 62366872 62366895 -180297458 + AT_rich Low_complexity Low_complexity 1 23 0 262 268 85 46 chr1 62366949 62367102 -180297251 - L2 LINE L2 -219 3053 2895 2376 92 0 0 chr1 62367236 62367539 -180296814 - AluSg SINE Alu -7 303 1 223 246 14 29 chr1 62368490 62368559 -180295794 + MIR SINE MIR 81 148 -114 2030 136 4 0 chr1 62368788 62369068 -180295285 + AluSq SINE Alu 1 281 -32 479 39 0 69 chr1 62369081 62369183 -180295170 + (TA)n Simple_repeat Simple_repeat 1 95 0 458 341 216 19 chr1 62369333 62369395 -180294958 - L2 LINE L2 0 3313 3264 282 116 0 0 chr1 62369395 62369438 -180294915 + (TA)n Simple_repeat Simple_repeat 1 43 0 458 341 216 19 chr1 62369438 62370144 -180294209 - L2 LINE L2 -49 3264 2382 1989 121 0 7 chr1 62370399 62370708 -180293645 + AluSg1 SINE Alu 1 307 0 217 246 46 15 chr1 62371074 62371139 -180293214 + L2 LINE L2 3230 3296 -17 201 338 100 0 chr1 62371181 62371261 -180293092 - L2 LINE L2 -30 3242 3155 21 0 0 0 chr1 62371388 62371409 -180292944 + AT_rich Low_complexity Low_complexity 1 21 0 280 205 111 60 chr1 62372094 62372211 -180292142 - MIR3 SINE MIR -2 206 84 * 431 275 46 52 chr1 62372174 62372394 -180291959 + MIR3 SINE MIR 10 226 -36 280 57 0 0 chr1 62372731 62372766 -180291587 - U2 snRNA snRNA -153 35 1 2056 137 19 22 chr1 62373060 62373426 -180290927 + L1MB1 LINE L1 5803 6167 -1 5326 124 11 0 chr1 62374181 62375018 -180289335 - L1PA15 LINE L1 -1 6164 5319 680 96 17 9 chr1 62375021 62375136 -180289217 - L1P4 LINE L1 -731 5434 5319 * 4589 172 14 29 chr1 62375132 62376322 -180288031 - L1P4 LINE L1 -722 5443 4276 221 73 0 24 chr1 62376425 62376466 -180287887 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 340 257 44 87 chr1 62376553 62376759 -180287594 + MER102a DNA MER1_type 133 329 -1 225 298 0 32 chr1 62376973 62377067 -180287286 + GA-rich Low_complexity Low_complexity 5 95 0 252 315 0 45 chr1 62377271 62377360 -180286993 - MIR SINE MIR -16 246 162 180 111 0 0 chr1 62377360 62377387 -180286966 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2289 60 0 10 chr1 62377450 62377749 -180286604 + AluY SINE Alu 1 296 -15 586 328 35 20 chr1 62377751 62377949 -180286404 - MIR SINE MIR -56 206 6 324 328 56 98 chr1 62377954 62378384 -180285969 - L2 LINE L2 -20 3252 2841 24 53 0 0 chr1 62379356 62379394 -180284959 + AT_rich Low_complexity Low_complexity 1 38 0 357 233 14 85 chr1 62379433 62379610 -180284743 - MIR SINE MIR -62 146 37 673 263 43 71 chr1 62379643 62379727 -180284626 - MIR SINE MIR 0 262 177 2449 54 0 0 chr1 62379727 62380025 -180284328 - AluY SINE Alu -13 298 1 673 263 43 71 chr1 62380025 62380195 -180284158 - MIR SINE MIR -85 177 15 24 32 0 0 chr1 62380849 62380880 -180283473 + AT_rich Low_complexity Low_complexity 1 31 0 667 217 40 49 chr1 62381436 62381662 -180282691 - LTR33A LTR ERVL -3 520 297 209 139 23 0 chr1 62382385 62382428 -180281925 + (TA)n Simple_repeat Simple_repeat 1 44 0 1317 252 46 33 chr1 62382801 62383409 -180280944 - L1MEc LINE L1 -4147 2249 1634 * 1584 235 50 2 chr1 62383408 62383850 -180280503 - L1MEc LINE L1 -4918 1127 665 442 230 115 18 chr1 62383869 62384034 -180280319 - L1MEc LINE L1 -6187 377 197 1186 296 136 26 chr1 62384052 62385487 -180278866 - L1MEc LINE L1 -4756 1989 441 183 339 0 0 chr1 62385585 62385641 -180278712 - L2 LINE L2 0 3272 3217 518 301 82 10 chr1 62385651 62385869 -180278484 + MIR SINE MIR 4 233 -29 221 69 0 0 chr1 62386837 62386866 -180277487 + L2 LINE L2 3270 3298 -15 1217 143 4 91 chr1 62387537 62387792 -180276561 + AluJb SINE Alu 87 312 0 1163 251 130 24 chr1 62388202 62388748 -180275605 - L1ME2 LINE L1 0 6164 5561 327 322 35 14 chr1 62388748 62388891 -180275462 + LTR16A1 LTR ERVL 3 148 -309 322 198 0 104 chr1 62388902 62388963 -180275390 + MER96 DNA MER1_type? 1 67 -108 2030 133 4 0 chr1 62388963 62389242 -180275111 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr1 62389242 62389265 -180275088 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 322 198 0 104 chr1 62389265 62389298 -180275055 + MER96 DNA MER1_type? 65 86 -89 340 298 35 18 chr1 62389866 62389980 -180274373 + MIR SINE MIR 26 141 -67 332 329 50 14 chr1 62390756 62390896 -180273457 - MIR SINE MIR -57 205 61 1256 277 111 11 chr1 62391754 62392212 -180272141 - L2 LINE L2 -1537 1777 1274 1729 271 94 13 chr1 62392282 62392979 -180271374 - L2 LINE L2 -208 3105 2347 180 325 0 0 chr1 62393072 62393112 -180271241 + L2 LINE L2 3207 3246 -26 2465 59 0 0 chr1 62393112 62393401 -180270952 + AluY SINE Alu 1 289 -22 226 321 67 5 chr1 62393457 62393650 -180270703 + L1ME LINE L1 5136 5340 -806 495 256 24 114 chr1 62393744 62393823 -180270530 + L1ME LINE L1 5400 5485 -636 1568 200 25 0 chr1 62393823 62394108 -180270245 + AluJo SINE Alu 1 292 -20 495 256 24 114 chr1 62394108 62394317 -180270036 + L1ME LINE L1 5485 5662 -459 1881 159 17 75 chr1 62394515 62394929 -180269424 + MLT1B LTR MaLR 1 390 0 453 338 29 29 chr1 62394929 62395133 -180269220 - MIR SINE MIR -43 219 16 2127 81 18 0 chr1 62395162 62395445 -180268908 + L1PA7 LINE L1 5865 6152 -2 1603 155 47 20 chr1 62395445 62395742 -180268611 - AluSx SINE Alu -7 305 1 24 0 0 0 chr1 62395851 62395875 -180268478 + AT_rich Low_complexity Low_complexity 1 24 0 1686 251 48 7 chr1 62396825 62397267 -180267086 + LTR40b LTR ERVL 1 460 -2 518 277 188 5 chr1 62397311 62397524 -180266829 - MIR SINE MIR -5 257 6 1915 211 38 92 chr1 62397790 62398521 -180265832 + L1MC4a LINE L1 7116 7807 -1 433 309 146 9 chr1 62398570 62398790 -180265563 + MIR SINE MIR 3 252 -10 718 276 86 4 chr1 62398950 62399193 -180265160 - MER102b DNA MER1_type 0 341 79 218 261 0 0 chr1 62399639 62399685 -180264668 + L3 LINE CR1 1515 1560 -17 242 358 0 11 chr1 62400256 62400351 -180264002 - MIR3 SINE MIR -25 183 90 531 272 60 68 chr1 62400662 62400897 -180263456 - MIR SINE MIR -2 260 28 187 344 16 0 chr1 62400995 62401056 -180263297 - L2 LINE L2 -17 3296 3235 787 216 35 20 chr1 62401554 62401753 -180262600 + MIR SINE MIR 36 237 -25 330 287 26 35 chr1 62402075 62402190 -180262163 + MIR SINE MIR 75 188 -74 267 54 0 0 chr1 62402638 62402675 -180261678 + (CA)n Simple_repeat Simple_repeat 2 38 0 267 305 229 8 chr1 62403101 62403219 -180261134 + MIR SINE MIR 22 165 -97 362 304 18 18 chr1 62403316 62403428 -180260925 + MIR SINE MIR 21 132 -76 26 50 0 0 chr1 62403664 62403704 -180260649 + AT_rich Low_complexity Low_complexity 1 40 0 2052 125 0 3 chr1 62403902 62404197 -180260156 + AluSc SINE Alu 1 294 -15 495 275 29 26 chr1 62404991 62405009 -180259344 + MIR SINE MIR 44 60 -202 924 236 5 0 chr1 62405009 62405217 -180259136 + MER3 DNA MER1_type 1 209 0 495 275 29 26 chr1 62405217 62405410 -180258943 + MIR SINE MIR 60 256 -6 588 339 36 0 chr1 62406304 62406528 -180257825 + L2 LINE L2 2225 2456 -858 905 183 0 3 chr1 62406700 62406929 -180257424 + AluJb SINE Alu 1 303 -9 248 259 123 12 chr1 62406948 62407029 -180257324 + L2 LINE L2 3143 3232 -40 197 281 224 43 chr1 62407034 62407244 -180257109 + L2 LINE L2 3066 3313 0 402 103 39 0 chr1 62407465 62407543 -180256810 + CT-rich Low_complexity Low_complexity 2 82 0 429 248 75 15 chr1 62408107 62408240 -180256113 + MIR SINE MIR 60 200 -62 210 130 68 34 chr1 62408418 62408564 -180255789 + (CA)n Simple_repeat Simple_repeat 2 152 0 240 324 38 0 chr1 62408785 62408890 -180255463 - MIR SINE MIR -4 258 150 329 262 81 64 chr1 62409759 62409931 -180254422 - MIR SINE MIR -31 231 57 346 295 147 26 chr1 62410147 62410337 -180254016 + L2 LINE L2 3008 3220 -93 726 293 37 8 chr1 62411587 62411829 -180252524 - MIR SINE MIR 0 262 14 279 292 111 53 chr1 62412080 62412251 -180252102 + MIR3 SINE MIR 17 197 -11 1098 235 123 24 chr1 62412380 62412835 -180251518 - MLT1D LTR MaLR 0 505 6 182 361 0 42 chr1 62413444 62413516 -180250837 + MIR SINE MIR 35 103 -105 213 343 20 39 chr1 62413544 62413646 -180250707 + L2 LINE L2 3087 3186 -86 314 322 136 25 chr1 62413721 62413839 -180250514 - MIR SINE MIR -112 150 20 187 243 0 0 chr1 62414194 62414231 -180250122 - MIR SINE MIR -178 84 48 219 88 0 0 chr1 62414387 62414421 -180249932 + (CA)n Simple_repeat Simple_repeat 1 34 0 364 309 57 17 chr1 62415753 62415928 -180248425 + MIR SINE MIR 75 256 -6 213 204 0 37 chr1 62416203 62416257 -180248096 + (TA)n Simple_repeat Simple_repeat 2 53 0 3362 245 31 46 chr1 62416330 62417924 -180246429 + L1MA9 LINE L1 1 2167 -5001 1182 219 11 4 chr1 62417904 62418183 -180246170 + L1MA9 LINE L1 5602 5882 -1285 * 4210 209 18 11 chr1 62419215 62420636 -180243717 + L1MA9 LINE L1 5864 7295 -38 26 30 0 0 chr1 62420636 62420669 -180243684 + AT_rich Low_complexity Low_complexity 1 33 0 2594 186 0 11 chr1 62420696 62421416 -180242937 + L1MB5 LINE L1 5074 5786 -388 1288 151 47 2 chr1 62421417 62421706 -180242647 - MER2 DNA MER2_type 0 345 1 1288 209 28 0 chr1 62421734 62422016 -180242337 + L1MB5 LINE L1 5877 6166 -8 700 240 121 19 chr1 62422722 62423080 -180241273 - LTR33A LTR ERVL 0 523 83 556 332 86 55 chr1 62423439 62424267 -180240086 + L2 LINE L2 2442 3292 -21 2464 296 154 21 chr1 62424490 62425929 -180238424 + L2 LINE L2 713 2343 -971 315 326 144 0 chr1 62425958 62426145 -180238208 + L2 LINE L2 2924 3137 -176 762 183 203 20 chr1 62426391 62426593 -180237760 + MER8 DNA MER2_type 1 239 0 246 257 120 64 chr1 62427154 62427228 -180237125 + MIR3 SINE MIR 10 78 -184 796 205 79 0 chr1 62427228 62427418 -180236935 - MER3 DNA MER1_type 0 209 5 246 257 120 64 chr1 62427418 62427547 -180236806 + MIR3 SINE MIR 78 252 -10 231 328 56 8 chr1 62427542 62427667 -180236686 + L2 LINE L2 3166 3296 -17 * 202 219 37 12 chr1 62427771 62427853 -180236500 + (TA)n Simple_repeat Simple_repeat 1 84 0 285 151 0 0 chr1 62427889 62427942 -180236411 + GA-rich Low_complexity Low_complexity 2 54 0 372 321 59 7 chr1 62427951 62428140 -180236213 - MIR SINE MIR -21 241 5 501 237 184 53 chr1 62428286 62428476 -180235877 + MIR SINE MIR 17 231 -31 574 322 47 2 chr1 62429766 62429991 -180234362 - MIR SINE MIR -17 245 17 392 248 40 0 chr1 62430015 62430116 -180234237 - MIR SINE MIR -64 198 94 200 362 48 38 chr1 62430139 62430244 -180234109 + MIR SINE MIR 27 132 -130 1730 168 10 46 chr1 62430297 62430601 -180233752 + AluJb SINE Alu 1 293 -19 242 348 133 15 chr1 62431331 62431466 -180232887 + MIR3 SINE MIR 3 153 -55 246 300 14 14 chr1 62431517 62431587 -180232766 - L2 LINE L2 0 3272 3203 536 276 160 0 chr1 62431664 62431820 -180232533 + MER5A DNA MER1_type 9 189 0 242 377 9 0 chr1 62431932 62432038 -180232315 - L2 LINE L2 -304 2968 2862 202 231 0 26 chr1 62432304 62432382 -180231971 + GA-rich Low_complexity Low_complexity 1 76 0 2407 91 7 3 chr1 62432385 62432694 -180231659 + AluSp SINE Alu 1 310 -3 236 222 0 0 chr1 62433238 62433265 -180231088 + LTR16C LTR ERVL 438 464 -27 290 45 23 0 chr1 62433265 62433309 -180231044 + (TTG)n Simple_repeat Simple_repeat 2 46 0 236 222 0 0 chr1 62433309 62433335 -180231018 + LTR16C LTR ERVL 463 491 0 271 109 43 0 chr1 62433461 62433507 -180230846 - L2 LINE L2 0 3313 3266 363 343 117 25 chr1 62433575 62433849 -180230504 - L3 LINE CR1 -8 1569 1271 265 288 159 37 chr1 62433855 62434018 -180230335 - MIR3 SINE MIR -7 201 19 23 0 0 0 chr1 62434240 62434263 -180230090 + AT_rich Low_complexity Low_complexity 1 23 0 288 273 124 33 chr1 62434277 62434398 -180229955 - L2 LINE L2 -2 3270 3139 441 337 58 25 chr1 62434404 62434647 -180229706 + MIR SINE MIR 12 262 0 439 358 39 9 chr1 62434728 62434957 -180229396 + LTR16A LTR ERVL 8 243 -207 655 323 56 12 chr1 62435085 62435336 -180229017 + MIR SINE MIR 1 262 0 2234 99 0 0 chr1 62435754 62436058 -180228295 - AluY SINE Alu -7 304 1 280 259 12 12 chr1 62436676 62436757 -180227596 - MIR SINE MIR -71 191 111 603 313 34 6 chr1 62436859 62437035 -180227318 + MIR SINE MIR 12 192 -70 427 316 23 17 chr1 62437700 62437877 -180226476 - MIR3 SINE MIR -14 194 17 259 352 111 32 chr1 62437959 62438212 -180226141 - L2 LINE L2 -1 3312 3040 477 62 0 0 chr1 62438551 62438616 -180225737 + (CA)n Simple_repeat Simple_repeat 2 66 0 318 313 68 20 chr1 62439133 62439280 -180225073 + MIR SINE MIR 86 239 -23 257 351 15 22 chr1 62439587 62439721 -180224632 + MIR SINE MIR 78 210 -52 220 224 0 0 chr1 62439804 62439853 -180224500 + A-rich Low_complexity Low_complexity 1 49 0 612 231 115 73 chr1 62440687 62440921 -180223432 - MIR SINE MIR -8 254 11 255 294 32 56 chr1 62441658 62441784 -180222569 - MIR SINE MIR -119 143 21 672 143 18 0 chr1 62441821 62441933 -180222420 + AluSc SINE Alu 190 303 -6 293 322 58 71 chr1 62442387 62442682 -180221671 - L2 LINE L2 -164 3108 2818 387 298 12 10 chr1 62442871 62442989 -180221364 - MIR SINE MIR -62 146 33 605 289 46 39 chr1 62443574 62443834 -180220519 - MIR SINE MIR 0 262 1 270 320 68 0 chr1 62443880 62443983 -180220370 + MIR SINE MIR 16 125 -83 1691 108 78 0 chr1 62443993 62444248 -180220105 - AluSx SINE Alu 0 307 35 373 287 9 56 chr1 62445427 62445535 -180218818 - MIR SINE MIR -83 125 23 314 301 49 69 chr1 62445525 62445728 -180218625 + L2 LINE L2 2865 3063 -209 * 378 0 0 0 chr1 62445740 62445782 -180218571 + (TG)n Simple_repeat Simple_repeat 1 42 0 366 293 89 13 chr1 62446506 62446663 -180217690 + MIR SINE MIR 80 248 -14 345 291 116 42 chr1 62447151 62447386 -180216967 + MIR SINE MIR 5 256 -6 343 299 65 39 chr1 62447767 62447921 -180216432 - MIR SINE MIR -99 163 6 228 200 22 0 chr1 62448066 62448111 -180216242 + MIR SINE MIR 107 152 -110 23 68 0 0 chr1 62448193 62448237 -180216116 + AT_rich Low_complexity Low_complexity 1 44 0 561 264 71 30 chr1 62448858 62449055 -180215298 + MIR SINE MIR 58 262 0 371 307 35 49 chr1 62449225 62449433 -180214920 + MIR SINE MIR 3 208 -29 241 320 139 8 chr1 62449898 62450021 -180214332 + MIR SINE MIR 13 143 -65 241 254 28 0 chr1 62450041 62450112 -180214241 - MLT1H LTR MaLR -15 527 455 676 251 53 45 chr1 62450236 62450483 -180213870 - MLT1H LTR MaLR -258 291 43 1963 212 75 46 chr1 62450631 62451373 -180212980 + L1MC5 LINE L1 7154 7917 -44 427 188 31 0 chr1 62451408 62451504 -180212849 + L1MC5 LINE L1 7344 7442 -519 2918 205 17 23 chr1 62451516 62451686 -180212667 + L1M4 LINE L1 3690 3859 -2287 1547 181 49 21 chr1 62451686 62451974 -180212379 + AluJo SINE Alu 1 296 -16 2918 205 17 23 chr1 62451974 62452553 -180211800 + L1M4 LINE L1 3859 4435 -1711 888 156 0 0 chr1 62452580 62452721 -180211632 + L1MC1 LINE L1 6177 6317 -16 876 155 0 0 chr1 62452735 62452864 -180211489 - FLAM_C SINE Alu -10 133 5 803 148 0 77 chr1 62452864 62453017 -180211336 + L1MA6 LINE L1 6130 6268 -32 2317 106 0 3 chr1 62453017 62453319 -180211034 - AluSg SINE Alu -9 301 1 803 148 0 77 chr1 62453319 62453347 -180211006 + L1MA6 LINE L1 6268 6297 -3 210 241 37 19 chr1 62453430 62453484 -180210869 + L2 LINE L2 3232 3286 -27 243 274 49 39 chr1 62453530 62453632 -180210721 + L2 LINE L2 2853 2955 -317 7459 37 0 0 chr1 62453690 62454885 -180209468 - L1PA4 LINE L1 -4 6151 4957 1087 90 0 0 chr1 62454986 62455119 -180209234 + AluSg/x SINE Alu 154 286 -24 25 31 0 0 chr1 62455119 62455151 -180209202 + AT_rich Low_complexity Low_complexity 1 32 0 231 140 123 0 chr1 62455368 62455425 -180208928 + L1M3 LINE L1 5521 5584 -596 306 104 0 0 chr1 62456046 62456094 -180208259 + L1MA7 LINE L1 6065 6112 -179 12855 123 22 94 chr1 62456094 62456389 -180207964 + Tigger1 DNA MER2_type 2 317 -2101 8118 45 1 0 chr1 62456389 62458155 -180206198 + L1PA5 LINE L1 4382 6149 -5 216 0 0 0 chr1 62458162 62458186 -180206167 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 12855 123 22 94 chr1 62458186 62459943 -180204410 + Tigger1 DNA MER2_type 323 1839 -579 2077 138 17 3 chr1 62459943 62460291 -180204062 + L1PA16 LINE L1 5805 6157 -9 12855 123 22 94 chr1 62460291 62460833 -180203520 + Tigger1 DNA MER2_type 1839 2418 0 2212 125 0 0 chr1 62460860 62461165 -180203188 - AluSx SINE Alu -7 305 1 643 135 24 0 chr1 62461241 62461367 -180202986 + L1MA7 LINE L1 6161 6289 -2 230 281 0 0 chr1 62461588 62461652 -180202701 + L1ME LINE L1 5797 5860 -310 665 290 45 66 chr1 62461982 62462158 -180202195 + L3 LINE CR1 1058 1225 -352 589 186 9 18 chr1 62462158 62462271 -180202082 - MER81 DNA DNA -2 112 1 665 290 45 66 chr1 62462271 62462429 -180201924 + L3 LINE CR1 1225 1385 -192 1887 93 4 0 chr1 62462458 62462717 -180201636 - L1PA8 LINE L1 0 6172 5913 318 181 181 36 chr1 62463043 62463126 -180201227 - MIR SINE MIR -157 105 11 207 100 0 0 chr1 62463452 62463482 -180200871 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 23711 65 2 4 chr1 62463482 62467304 -180197049 - L1PA6 LINE L1 -16 6138 2324 24 0 0 0 chr1 62467366 62467390 -180196963 + AT_rich Low_complexity Low_complexity 1 24 0 228 324 0 0 chr1 62467392 62467460 -180196893 - MIR SINE MIR 0 262 195 283 346 101 31 chr1 62468133 62468361 -180195992 - L3 LINE CR1 -889 688 445 384 353 128 48 chr1 62468658 62469009 -180195344 - L2 LINE L2 0 3272 2894 426 306 38 19 chr1 62469690 62469850 -180194503 + MER5A DNA MER1_type 2 164 -25 24 0 0 0 chr1 62470106 62470130 -180194223 + AT_rich Low_complexity Low_complexity 1 24 0 607 264 99 65 chr1 62470264 62470867 -180193486 - L1MC5 LINE L1 -78 7883 7260 390 274 144 50 chr1 62470857 62471255 -180193098 - L1MC4 LINE L1 -599 7443 7084 * 1689 164 73 0 chr1 62471255 62471542 -180192811 + AluJb SINE Alu 1 308 -4 390 274 144 50 chr1 62471542 62472020 -180192333 - L1MC4 LINE L1 -958 7084 6478 678 304 16 29 chr1 62472154 62472397 -180191956 - MIR SINE MIR -8 254 15 181 366 24 0 chr1 62473402 62473484 -180190869 + MIR SINE MIR 66 149 -59 269 355 0 11 chr1 62474219 62474312 -180190041 - MIR3 SINE MIR -104 104 13 483 240 48 16 chr1 62474333 62474458 -180189895 - MIR SINE MIR -70 192 64 778 285 128 20 chr1 62475525 62475678 -180188675 - MLT1I LTR MaLR -9 400 265 1559 157 61 29 chr1 62475678 62475990 -180188363 + MER33 DNA MER1_type 2 323 -1 778 285 128 20 chr1 62475990 62476194 -180188159 - MLT1I LTR MaLR -144 265 4 290 387 24 0 chr1 62476231 62476355 -180187998 + L2 LINE L2 2934 3060 -212 233 286 65 0 chr1 62476620 62476697 -180187656 + L2 LINE L2 3226 3307 -6 388 280 43 28 chr1 62476721 62476932 -180187421 - MIR3 SINE MIR -40 222 14 1725 176 0 7 chr1 62477030 62477314 -180187039 - AluJo SINE Alu -30 282 1 210 195 0 0 chr1 62477381 62477422 -180186931 - L2 LINE L2 -3 3310 3270 380 291 108 0 chr1 62477440 62477588 -180186765 + MIR SINE MIR 22 185 -77 2718 219 63 15 chr1 62477595 62478183 -180186170 - MLT1E2 LTR MaLR -10 616 1 352 193 12 24 chr1 62478183 62478266 -180186087 + MIR SINE MIR 180 261 -1 210 286 0 0 chr1 62478406 62478448 -180185905 + L2 LINE L2 3191 3232 -40 333 282 141 0 chr1 62478452 62478594 -180185759 - MIR SINE MIR -1 261 100 429 324 14 27 chr1 62478853 62479001 -180185352 - MIR SINE MIR -109 153 8 273 338 32 13 chr1 62479630 62479784 -180184569 + MIR SINE MIR 88 244 -18 962 283 4 4 chr1 62480795 62481039 -180183314 - MIR SINE MIR -10 252 9 294 259 86 0 chr1 62482058 62482139 -180182214 + MIR SINE MIR 108 195 -67 402 343 64 27 chr1 62483200 62483419 -180180934 - L2 LINE L2 -220 3052 2826 267 198 49 74 chr1 62483629 62483710 -180180643 + HERV3 LTR ERV1 3694 3772 -4654 1324 245 73 39 chr1 62483736 62484243 -180180110 + HERV3 LTR ERV1 6153 6676 0 1983 149 60 9 chr1 62484328 62484677 -180179676 + MER41E LTR ERV1 1 367 -145 259 356 91 27 chr1 62484694 62484913 -180179440 - L2 LINE L2 -522 2792 2560 371 271 215 14 chr1 62485001 62485145 -180179208 + MER5B DNA MER1_type 1 173 -5 2594 296 87 14 chr1 62485422 62486445 -180177908 + L2 LINE L2 1794 2891 -423 1340 160 87 30 chr1 62486457 62486784 -180177569 - MLT1A1 LTR MaLR -28 362 5 636 333 77 37 chr1 62486830 62487209 -180177144 + L2 LINE L2 2920 3313 0 203 239 0 22 chr1 62487340 62487386 -180176967 - L2 LINE L2 -2 3311 3267 182 329 71 0 chr1 62488108 62488193 -180176160 - L2 LINE L2 0 3313 3223 299 340 51 32 chr1 62488258 62488414 -180175939 - L2 LINE L2 -203 3069 2911 282 319 0 0 chr1 62488436 62488508 -180175845 + L2 LINE L2 3199 3270 -2 360 0 0 0 chr1 62488691 62488731 -180175622 + (TG)n Simple_repeat Simple_repeat 2 41 0 2219 239 75 35 chr1 62489327 62490048 -180174305 - L1M4 LINE L1 -1012 5134 4385 272 126 39 68 chr1 62490080 62490183 -180174170 + A-rich Low_complexity Low_complexity 3 102 0 478 235 26 57 chr1 62490188 62490418 -180173935 - L1M4 LINE L1 -1786 4360 4138 1717 39 0 0 chr1 62490419 62490624 -180173729 + L1PA4 LINE L1 5924 6128 -27 301 164 0 0 chr1 62490619 62490680 -180173673 - L1M4 LINE L1 -1939 4207 4147 * 822 264 33 26 chr1 62490673 62490901 -180173452 - L1MDa LINE L1 -6150 571 1 236 358 8 58 chr1 62491219 62491339 -180173014 - MIR SINE MIR -74 134 21 1494 154 150 46 chr1 62491373 62491832 -180172521 - L1M4 LINE L1 -399 5785 5240 361 194 14 14 chr1 62491832 62491904 -180172449 - Tigger5 DNA MER2_type 0 2323 2252 2243 104 0 16 chr1 62491904 62492212 -180172141 + AluSc SINE Alu 1 303 -6 1230 132 4 35 chr1 62492252 62492479 -180171874 - L1M4 LINE L1 -905 5241 5022 283 255 133 0 chr1 62492714 62492812 -180171541 - L2 LINE L2 -16 3256 3146 15444 33 2 4 chr1 62492877 62495415 -180168938 + L1PA4 LINE L1 3572 6104 -51 276 292 31 10 chr1 62495533 62495629 -180168724 - MIR SINE MIR -136 126 29 1999 166 0 0 chr1 62495862 62496157 -180168196 + AluJb SINE Alu 1 295 -17 241 336 42 0 chr1 62496481 62496600 -180167753 - L2 LINE L2 -217 3055 2932 381 219 65 57 chr1 62496824 62496947 -180167406 - MER5A DNA MER1_type -29 160 37 415 300 47 29 chr1 62497177 62497347 -180167006 - MIR SINE MIR -70 192 20 2706 149 16 50 chr1 62498295 62498797 -180165556 - MER31A LTR ERV1 0 485 1 188 359 11 0 chr1 62499101 62499193 -180165160 + MIR SINE MIR 154 246 -16 216 267 250 15 chr1 62499218 62499348 -180165005 + MIR SINE MIR 32 147 -61 408 296 46 122 chr1 62500277 62500605 -180163748 - L2 LINE L2 0 3272 2970 205 330 80 62 chr1 62501201 62501477 -180162876 + L3 LINE CR1 178 458 -1119 230 242 0 101 chr1 62501537 62501636 -180162717 - L2 LINE L2 -166 3106 3018 686 254 6 33 chr1 62501687 62501868 -180162485 + MIR SINE MIR 83 258 -4 2868 177 21 0 chr1 62501896 62502382 -180161971 - L1MC2 LINE L1 -10 6334 5839 193 310 0 58 chr1 62502404 62502491 -180161862 + L3 LINE CR1 518 599 -978 204 302 0 0 chr1 62503050 62503103 -180161250 - L2 LINE L2 -223 3049 2997 375 290 134 16 chr1 62504136 62504322 -180160031 + MIR SINE MIR 28 235 -27 238 188 0 58 chr1 62504481 62504550 -180159803 - MLT1K LTR MaLR -17 571 507 416 282 130 32 chr1 62504664 62504880 -180159473 + MLT1J LTR MaLR 100 336 -175 554 319 62 42 chr1 62505644 62505703 -180158650 + L2 LINE L2 2221 2277 -1037 822 206 75 0 chr1 62505703 62505863 -180158490 - MER96 DNA MER1_type -2 173 2 554 319 62 42 chr1 62505863 62506274 -180158079 + L2 LINE L2 2277 2700 -614 238 300 82 27 chr1 62506426 62506536 -180157817 + L2 LINE L2 2965 3080 -192 292 358 42 0 chr1 62506721 62506841 -180157512 - L2 LINE L2 0 3272 3148 237 371 0 0 chr1 62507420 62507517 -180156836 + MIR SINE MIR 164 260 -2 397 286 196 6 chr1 62508227 62508395 -180155958 + MIR3 SINE MIR 6 205 -3 181 323 222 0 chr1 62508828 62508927 -180155426 - L2 LINE L2 -1 3271 3151 198 306 0 0 chr1 62509050 62509099 -180155254 - L2 LINE L2 -202 3070 3022 195 311 33 0 chr1 62509269 62509330 -180155023 + L2 LINE L2 3116 3178 -94 21 0 0 0 chr1 62510286 62510307 -180154046 + AT_rich Low_complexity Low_complexity 1 21 0 235 275 66 50 chr1 62510542 62510724 -180153629 + L1ME LINE L1 5292 5476 -645 220 267 52 52 chr1 62511207 62511323 -180153030 + MIR SINE MIR 25 140 -122 360 125 0 0 chr1 62511470 62511534 -180152819 + (CA)n Simple_repeat Simple_repeat 2 65 0 2234 81 3 0 chr1 62512004 62512314 -180152039 - AluSp SINE Alu 0 311 1 1045 90 14 0 chr1 62512425 62512570 -180151783 + AluSc SINE Alu 163 309 0 505 253 148 0 chr1 62512675 62512837 -180151516 + MIR SINE MIR 77 262 0 439 301 77 34 chr1 62513072 62513281 -180151072 + MIR SINE MIR 32 249 -13 230 311 37 22 chr1 62513306 62513441 -180150912 - MARNA DNA Mariner -46 540 404 1030 277 65 3 chr1 62513533 62513869 -180150484 - L1ME4a LINE L1 -201 5920 5564 369 242 61 15 chr1 62513870 62514002 -180150351 - L3 LINE CR1 -311 1266 1129 1245 286 64 12 chr1 62514347 62514833 -180149520 - LTR33 LTR ERVL -7 514 4 569 337 118 18 chr1 62515078 62515467 -180148886 + L2 LINE L2 2845 3272 0 297 320 54 14 chr1 62516692 62516839 -180147514 - L2 LINE L2 -228 3044 2892 892 138 0 20 chr1 62516841 62516993 -180147360 + L1PB1 LINE L1 6002 6150 -1 254 309 12 0 chr1 62517231 62517316 -180147037 + MIR SINE MIR 67 153 -55 756 231 44 20 chr1 62517345 62517548 -180146805 - MIR SINE MIR -18 244 37 192 300 17 0 chr1 62517811 62517871 -180146482 - L3b LINE CR1 -1 1582 1522 198 0 0 0 chr1 62518187 62518209 -180146144 + (A)n Simple_repeat Simple_repeat 1 22 0 1921 120 36 0 chr1 62518408 62518718 -180145635 - AluSx SINE Alu 0 320 1 561 256 23 62 chr1 62518841 62519017 -180145336 + MIR SINE MIR 23 191 -71 275 266 16 0 chr1 62519250 62519314 -180145039 + MIR SINE MIR 150 214 -48 10615 126 26 23 chr1 62519338 62521002 -180143351 + Tigger1 DNA MER2_type 1 1669 -749 446 285 47 16 chr1 62572053 62572246 -180092107 + MIR SINE MIR 61 259 -3 366 319 14 29 chr1 62572731 62572869 -180091484 - MIR3 SINE MIR -61 147 12 791 183 134 6 chr1 62573274 62573438 -180090915 - MER93a LTR ERV1 -217 185 1 2060 134 0 13 chr1 62574244 62574564 -180089789 - AluSx SINE Alu 0 312 5 2149 122 3 0 chr1 62575086 62575374 -180088979 + AluSx SINE Alu 1 289 -23 2720 123 6 18 chr1 62575395 62575944 -180088409 + L1P5 LINE L1 5148 5689 -462 12727 15 0 0 chr1 62576099 62578319 -180086034 + L1HS LINE L1 3935 6155 0 926 247 74 36 chr1 62578326 62578662 -180085691 + L1MC4 LINE L1 6806 7154 -888 425 92 15 0 chr1 62578697 62578762 -180085591 - MER41B LTR ERV1 -89 546 481 203 231 0 13 chr1 62579074 62579152 -180085201 + (CA)n Simple_repeat Simple_repeat 2 78 0 324 240 48 20 chr1 62579207 62579223 -180085130 - L1MA10 LINE L1 0 6334 6319 2678 205 44 65 chr1 62579223 62579982 -180084371 - L1ME1 LINE L1 -5 6161 5418 578 207 0 0 chr1 62579982 62580098 -180084255 - L1PB4 LINE L1 -1 6155 6040 2682 82 23 6 chr1 62580103 62580457 -180083896 - THE1B LTR MaLR -4 360 1 2327 153 0 0 chr1 62580457 62580824 -180083529 - L1PB4 LINE L1 -113 6043 5677 350 185 15 0 chr1 62581582 62581647 -180082706 + L2 LINE L2 3247 3312 -1 2382 74 0 7 chr1 62583552 62583851 -180080502 + AluY SINE Alu 1 297 -14 973 276 77 19 chr1 62585710 62586258 -180078095 + L1ME4a LINE L1 5496 6121 0 456 283 92 8 chr1 62586275 62586484 -180077869 + MIR SINE MIR 21 241 -21 393 284 149 19 chr1 62587178 62587386 -180076967 + MIR SINE MIR 20 254 -8 2401 91 7 0 chr1 62587511 62587818 -180076535 - AluSq SINE Alu -4 309 1 259 264 28 0 chr1 62587826 62587898 -180076455 - MIR SINE MIR -122 140 67 442 296 148 32 chr1 62587945 62588283 -180076070 - L2 LINE L2 0 3313 2937 351 313 51 3 chr1 62589101 62589258 -180075095 - MIR SINE MIR -63 145 15 255 125 0 0 chr1 62589527 62589567 -180074786 + (A)n Simple_repeat Simple_repeat 1 40 0 259 364 64 12 chr1 62589855 62590028 -180074325 + MIR SINE MIR 20 201 -61 292 184 14 213 chr1 62590254 62590395 -180073958 + MER5A DNA MER1_type 71 183 -6 341 331 153 0 chr1 62590407 62590564 -180073789 - MER5A DNA MER1_type 0 189 9 261 151 0 0 chr1 62590935 62590988 -180073365 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 519 348 37 40 chr1 62591334 62591688 -180072665 - L2 LINE L2 -10 3262 2910 419 273 0 47 chr1 62591779 62591907 -180072446 - L2 LINE L2 -6 3266 3145 237 384 0 32 chr1 62592609 62592794 -180071559 + GA-rich Low_complexity Low_complexity 2 180 0 253 287 11 0 chr1 62593512 62593599 -180070754 - MIR SINE MIR -119 143 56 355 253 133 6 chr1 62593600 62593766 -180070587 + L2 LINE L2 2543 2729 -585 445 296 66 25 chr1 62594022 62594265 -180070088 + MLT1K LTR MaLR 336 588 0 1253 204 83 28 chr1 62595255 62595360 -180068993 + AluJo SINE Alu 3 101 -211 180 0 0 0 chr1 62595360 62595380 -180068973 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1253 204 83 28 chr1 62595380 62595563 -180068790 + AluJo SINE Alu 101 307 -5 359 189 40 114 chr1 62597142 62597317 -180067036 + MIR SINE MIR 31 192 -70 10120 169 67 89 chr1 62597491 62597797 -180066556 - L1MC3 LINE L1 0 7785 7474 1987 98 23 4 chr1 62597797 62598063 -180066290 - AluSx SINE Alu -25 287 17 10120 169 67 89 chr1 62598063 62598394 -180065959 - L1MC3 LINE L1 -311 7474 7137 273 337 0 10 chr1 62598394 62598492 -180065861 - MLT1F1 LTR MaLR -436 131 35 10120 169 67 89 chr1 62598492 62598621 -180065732 - L1MC3 LINE L1 -648 7137 7007 429 70 0 0 chr1 62598621 62598678 -180065675 + (TTA)n Simple_repeat Simple_repeat 2 58 0 1772 177 0 3 chr1 62598680 62598963 -180065390 - AluJo SINE Alu -30 282 1 10120 169 67 89 chr1 62598963 62599768 -180064585 - L1MC3 LINE L1 -779 7006 6185 2259 99 3 0 chr1 62599768 62600081 -180064272 - AluSp SINE Alu 0 314 1 10120 169 67 89 chr1 62600081 62601158 -180063195 - L1MC3 LINE L1 -1600 6185 5092 311 228 0 25 chr1 62601641 62601720 -180062633 - MIR SINE MIR -136 126 50 181 222 162 71 chr1 62602520 62602619 -180061734 + MIR SINE MIR 33 140 -122 448 246 93 0 chr1 62603308 62603426 -180060927 + MIR SINE MIR 18 146 -62 188 370 92 25 chr1 62603885 62604004 -180060349 + L2 LINE L2 3137 3263 -9 676 245 24 35 chr1 62604581 62604833 -180059520 + MIR SINE MIR 9 250 -12 180 296 94 94 chr1 62604851 62605084 -180059269 + L2 LINE L2 3040 3272 0 207 152 22 0 chr1 62605359 62605405 -180058948 - L2 LINE L2 0 3313 3267 2203 123 20 0 chr1 62605462 62605764 -180058589 + AluSg SINE Alu 1 308 -2 234 307 89 20 chr1 62605849 62605950 -180058403 + MIR3 SINE MIR 15 122 -86 416 229 0 25 chr1 62606298 62606416 -180057937 + MIR SINE MIR 89 203 -59 2082 135 50 71 chr1 62606464 62606828 -180057525 + MSTA LTR MaLR 1 356 -72 1797 127 95 0 chr1 62606828 62607112 -180057241 - AluSq SINE Alu -1 312 2 2082 135 50 71 chr1 62607112 62607184 -180057169 + MSTA LTR MaLR 356 428 0 1940 208 17 0 chr1 62607278 62607625 -180056728 + MLT1A1 LTR MaLR 1 353 -12 341 302 32 16 chr1 62607753 62607879 -180056474 + MIR3 SINE MIR 35 162 -46 273 254 76 42 chr1 62608042 62608160 -180056193 - MLT1L LTR MaLR -235 380 259 247 264 42 0 chr1 62608263 62608335 -180056018 - MLT1L LTR MaLR -540 75 1 1318 205 16 4 chr1 62608634 62608888 -180055465 + AluJo SINE Alu 17 273 -39 253 258 125 83 chr1 62608916 62609036 -180055317 - MLT1J LTR MaLR -93 418 294 228 111 0 0 chr1 62609078 62609114 -180055239 + (GAGAA)n Simple_repeat Simple_repeat 5 40 0 270 56 0 0 chr1 62609115 62609151 -180055202 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 228 341 0 0 chr1 62609606 62609694 -180054659 + MIR SINE MIR 165 252 -10 334 243 0 0 chr1 62609715 62609785 -180054568 + MIR SINE MIR 78 147 -61 239 325 38 0 chr1 62609902 62609982 -180054371 + MIR SINE MIR 104 186 -76 296 274 19 19 chr1 62610706 62610812 -180053541 - MIR SINE MIR -38 224 119 229 314 0 0 chr1 62611217 62611268 -180053085 + L2 LINE L2 3163 3213 -59 302 269 57 28 chr1 62611491 62611632 -180052721 + MIR3 SINE MIR 47 191 -17 339 85 0 0 chr1 62611924 62611971 -180052382 + (CA)n Simple_repeat Simple_repeat 1 47 0 655 122 0 0 chr1 62612154 62612244 -180052109 + FRAM SINE Alu 75 164 -12 188 169 28 155 chr1 62612244 62612315 -180052038 - MER5A DNA MER1_type -32 157 96 * 204 188 42 0 chr1 62612268 62612316 -180052037 + MER5A DNA MER1_type 56 105 -84 2578 80 0 0 chr1 62612349 62612662 -180051691 - AluSq SINE Alu 0 313 1 404 139 0 81 chr1 62612758 62612844 -180051509 + MER116 DNA Mariner 2 80 0 256 318 22 43 chr1 62612886 62613025 -180051328 - MIR SINE MIR -68 140 15 328 232 214 9 chr1 62613704 62613816 -180050537 - MIR SINE MIR -108 154 20 392 330 42 2 chr1 62613854 62614064 -180050289 - MIR SINE MIR -25 237 20 567 303 62 5 chr1 62614851 62615062 -180049291 - MIR SINE MIR 0 262 40 271 254 0 0 chr1 62615125 62615188 -180049165 + MIR SINE MIR 83 145 -117 22 0 0 0 chr1 62615435 62615457 -180048896 + AT_rich Low_complexity Low_complexity 1 22 0 227 290 117 83 chr1 62615821 62615966 -180048387 + MIR SINE MIR 43 192 -70 666 222 101 32 chr1 62616094 62616283 -180048070 - MIR SINE MIR -48 214 13 270 283 23 110 chr1 62616299 62616472 -180047881 - L2 LINE L2 -86 3186 3029 629 271 94 16 chr1 62616632 62617067 -180047286 - LTR33 LTR ERVL -2 519 10 2277 124 7 0 chr1 62617141 62617448 -180046905 - AluSx SINE Alu -3 309 1 288 0 0 0 chr1 62617674 62617706 -180046647 + (CA)n Simple_repeat Simple_repeat 2 33 0 259 275 72 58 chr1 62617873 62618011 -180046342 - MIR SINE MIR -101 161 22 891 245 89 17 chr1 62618336 62618573 -180045780 - MIR SINE MIR -1 261 8 464 196 150 39 chr1 62618576 62618729 -180045624 - MIR3 SINE MIR -19 189 20 334 272 27 54 chr1 62619198 62619345 -180045008 - MIR3 SINE MIR -49 159 17 360 314 137 7 chr1 62619732 62619885 -180044468 + MIR SINE MIR 29 201 -61 451 320 73 5 chr1 62620075 62620281 -180044072 + MLT1K LTR MaLR 207 426 -162 2276 57 0 0 chr1 62620542 62620844 -180043509 - AluY SINE Alu 0 302 1 503 252 143 32 chr1 62620935 62621249 -180043104 + L1ME4a LINE L1 5541 5889 -232 805 251 72 92 chr1 62621256 62621488 -180042865 - MLT1J LTR MaLR 0 511 291 2135 106 7 0 chr1 62621488 62621789 -180042564 + AluSp SINE Alu 1 303 -10 805 251 72 92 chr1 62621789 62622015 -180042338 - MLT1J LTR MaLR -220 291 62 1909 144 13 0 chr1 62622195 62622494 -180041859 + AluSx SINE Alu 1 303 -9 476 277 144 20 chr1 62622873 62623075 -180041278 - MIR SINE MIR -11 251 25 180 293 0 0 chr1 62623592 62623633 -180040720 + MIR SINE MIR 107 147 -61 556 288 31 6 chr1 62623839 62623999 -180040354 + MIR SINE MIR 7 170 -92 488 281 127 18 chr1 62624069 62624290 -180040063 - MIR SINE MIR -12 250 6 2001 182 70 8 chr1 62625002 62625367 -180038986 + MLT1C LTR MaLR 3 390 -77 2127 165 38 33 chr1 62625367 62625914 -180038439 + MLT2A2 LTR ERVL 2 554 0 501 181 0 0 chr1 62625914 62625997 -180038356 + MLT1C LTR MaLR 385 467 0 674 285 141 19 chr1 62626007 62626277 -180038076 - L2 LINE L2 -54 3259 2957 1850 85 4 26 chr1 62626361 62626632 -180037721 + L1MA1 LINE L1 6034 6298 -4 329 299 41 138 chr1 62626648 62626939 -180037414 + L2 LINE L2 3010 3272 0 438 120 0 0 chr1 62626939 62627014 -180037339 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 262 247 39 13 chr1 62627030 62627107 -180037246 - MIR SINE MIR -65 197 119 347 281 9 35 chr1 62627274 62627388 -180036965 - MIR SINE MIR -72 190 80 195 212 121 15 chr1 62627439 62627505 -180036848 - MIR3 SINE MIR -10 198 126 579 300 96 83 chr1 62628287 62629122 -180035231 + L2 LINE L2 2445 3272 0 2237 93 3 6 chr1 62629233 62629544 -180034809 - AluSq SINE Alu -3 310 1 353 329 155 16 chr1 62629614 62629924 -180034429 - L2 LINE L2 -1000 2314 1962 209 289 24 60 chr1 62631387 62631470 -180032883 - L2 LINE L2 -238 3034 2955 382 218 13 13 chr1 62631646 62631724 -180032629 + MIR SINE MIR 38 115 -93 400 98 0 0 chr1 62631727 62631788 -180032565 - AluSp/q SINE Alu -13 300 240 272 298 12 36 chr1 62631788 62631872 -180032481 + MIR3 SINE MIR 123 204 -4 302 289 21 10 chr1 62632018 62632115 -180032238 - MIR3 SINE MIR -12 196 99 288 0 0 0 chr1 62632244 62632276 -180032077 + (A)n Simple_repeat Simple_repeat 1 32 0 1601 167 17 0 chr1 62632653 62632940 -180031413 + AluSx SINE Alu 1 292 -20 659 12 0 12 chr1 62633229 62633310 -180031043 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 2073 100 0 29 chr1 62633360 62633670 -180030683 - AluSg SINE Alu -9 301 1 5872 144 35 9 chr1 62633674 62634527 -180029826 - L1PA16 LINE L1 -13 6153 5262 198 0 0 0 chr1 62634527 62634549 -180029804 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5872 144 35 9 chr1 62634549 62635001 -180029352 - L1PA16 LINE L1 -904 5262 4823 245 287 23 23 chr1 62635012 62635099 -180029254 + L2 LINE L2 3186 3272 0 293 269 21 35 chr1 62635123 62635264 -180029089 + (TATATG)n Simple_repeat Simple_repeat 6 144 0 1908 107 4 4 chr1 62636902 62637173 -180027180 + AluSx SINE Alu 32 302 -10 373 254 142 12 chr1 62637301 62637470 -180026883 + L1ME4a LINE L1 5733 5923 -198 251 131 33 16 chr1 62637598 62637659 -180026694 + L1ME4a LINE L1 6051 6112 -9 2283 136 45 5 chr1 62638692 62639067 -180025286 + MLT1B LTR MaLR 1 390 0 426 226 71 9 chr1 62639106 62639223 -180025130 - MIR SINE MIR -72 136 12 199 247 55 18 chr1 62639464 62639574 -180024779 + MIR SINE MIR 6 121 -87 183 235 39 20 chr1 62639743 62639794 -180024559 + L2 LINE L2 2999 3050 -222 215 297 16 0 chr1 62639853 62639917 -180024436 + L2 LINE L2 3249 3313 0 446 282 61 33 chr1 62639917 62640130 -180024223 + L2 LINE L2 3094 3312 -1 183 331 37 54 chr1 62640437 62640679 -180023674 - L2 LINE L2 -219 3053 2816 425 323 15 0 chr1 62641138 62641271 -180023082 + MIR SINE MIR 48 182 -80 216 0 0 0 chr1 62641277 62641301 -180023052 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 217 176 0 0 chr1 62641301 62641335 -180023018 - L2 LINE L2 -19 3294 3261 649 304 11 6 chr1 62642234 62642422 -180021931 - MIR SINE MIR -61 147 1 273 276 59 39 chr1 62642527 62642661 -180021692 - MIR SINE MIR -62 146 35 830 216 27 5 chr1 62643432 62643617 -180020736 - MER5A DNA MER1_type 0 189 1 655 321 69 51 chr1 62643775 62644223 -180020130 + L2 LINE L2 2814 3269 -3 209 316 45 93 chr1 62644328 62644575 -180019778 - L2 LINE L2 -44 3228 2994 212 200 100 0 chr1 62645015 62645065 -180019288 - MIR3 SINE MIR -23 185 131 322 254 254 37 chr1 62645065 62645309 -180019044 + L2 LINE L2 2909 3205 -108 816 142 0 0 chr1 62645311 62645424 -180018929 + FLAM_C SINE Alu 2 114 -29 180 0 0 0 chr1 62645424 62645444 -180018909 + (TA)n Simple_repeat Simple_repeat 1 20 0 457 265 26 26 chr1 62645460 62645577 -180018776 + L2 LINE L2 3197 3313 0 181 215 13 114 chr1 62646020 62646099 -180018254 - L2 LINE L2 0 3272 3202 437 268 79 30 chr1 62646560 62646724 -180017629 + MIR SINE MIR 85 256 -6 223 252 288 18 chr1 62648476 62648587 -180015766 + MIR3 SINE MIR 16 156 -52 184 359 137 0 chr1 62648910 62649027 -180015326 + MIR3 SINE MIR 63 195 -13 405 295 47 9 chr1 62649199 62649339 -180015014 - MIR SINE MIR -65 143 34 446 289 47 0 chr1 62650364 62650492 -180013861 + MIR SINE MIR 84 217 -45 255 229 99 38 chr1 62650941 62651072 -180013281 - MIR SINE MIR -16 246 108 387 261 123 8 chr1 62652852 62652982 -180011371 + MIR SINE MIR 48 192 -70 552 227 122 48 chr1 62653547 62653776 -180010577 + MIR SINE MIR 7 252 -10 183 305 144 42 chr1 62654618 62654785 -180009568 - L2 LINE L2 -9 3263 3080 1745 136 0 0 chr1 62654924 62655182 -180009171 - AluSx SINE Alu -11 301 44 204 238 191 0 chr1 62655276 62655339 -180009014 + L2 LINE L2 3233 3307 -6 * 230 288 169 17 chr1 62655338 62655456 -180008897 + MIR3 SINE MIR 6 141 -67 191 158 158 0 chr1 62656759 62656797 -180007556 + MIR SINE MIR 17 60 -148 516 265 135 19 chr1 62656925 62657140 -180007213 - MIR SINE MIR 0 262 23 377 284 20 47 chr1 62657704 62657852 -180006501 - MIR SINE MIR -41 221 78 24 0 0 0 chr1 62658186 62658210 -180006143 + AT_rich Low_complexity Low_complexity 1 24 0 1501 173 40 4 chr1 62658852 62659129 -180005224 - AluSx SINE Alu -25 287 1 1885 122 7 0 chr1 62660050 62660329 -180004024 + AluSg SINE Alu 14 294 -16 180 267 158 68 chr1 62660672 62660818 -180003535 - L2 LINE L2 -12 3301 3143 559 267 27 0 chr1 62660954 62661100 -180003253 - MIR SINE MIR -2 260 111 22 0 0 0 chr1 62661370 62661392 -180002961 + AT_rich Low_complexity Low_complexity 1 22 0 198 156 0 0 chr1 62661669 62661714 -180002639 + (CAG)n Simple_repeat Simple_repeat 1 45 0 * 279 71 0 0 chr1 62661703 62661745 -180002608 + (GGA)n Simple_repeat Simple_repeat 3 44 0 228 35 0 0 chr1 62662404 62662433 -180001920 + (CCGCG)n Simple_repeat Simple_repeat 5 33 0 187 159 182 0 chr1 62662901 62662945 -180001408 - L2 LINE L2 -9 3263 3212 414 224 43 17 chr1 62663330 62663446 -180000907 + MIR3 SINE MIR 64 182 -26 300 291 80 53 chr1 62665893 62666044 -179998309 + MIR3 SINE MIR 3 157 -51 194 320 13 13 chr1 62666109 62666187 -179998166 - MIR SINE MIR -11 251 174 183 324 108 0 chr1 62666200 62666274 -179998079 + MIR SINE MIR 54 135 -73 196 326 78 23 chr1 62666460 62666589 -179997764 - L2 LINE L2 -912 2402 2267 236 219 32 114 chr1 62666595 62666718 -179997635 - L2 LINE L2 0 3313 3201 709 323 86 22 chr1 62667085 62667447 -179996906 + L2 LINE L2 2921 3305 -8 295 315 84 35 chr1 62667514 62667657 -179996696 - L2 LINE L2 -7 3265 3116 285 282 59 0 chr1 62667879 62667964 -179996389 + L2 LINE L2 3182 3271 -1 2074 180 3 21 chr1 62667997 62668385 -179995968 + L1MB2 LINE L1 5779 6159 -12 243 0 0 0 chr1 62668389 62668416 -179995937 + (TAA)n Simple_repeat Simple_repeat 1 27 0 305 206 8 127 chr1 62668460 62668523 -179995830 + Charlie2 DNA MER1_type 2748 2790 -72 2248 104 0 7 chr1 62668523 62668831 -179995522 - AluSg SINE Alu -4 306 1 305 206 8 127 chr1 62668831 62668893 -179995460 + Charlie2 DNA MER1_type 2790 2858 -4 1557 246 80 43 chr1 62668899 62669737 -179994616 - L2 LINE L2 -1518 1796 928 205 207 69 11 chr1 62669779 62669866 -179994487 + (TA)n Simple_repeat Simple_repeat 2 93 0 340 213 9 9 chr1 62669897 62670005 -179994348 + (TA)n Simple_repeat Simple_repeat 2 109 0 21 0 0 0 chr1 62670420 62670441 -179993912 + GC_rich Low_complexity Low_complexity 1 21 0 245 264 216 14 chr1 62670966 62671114 -179993239 - MIR SINE MIR -72 190 13 2038 122 28 3 chr1 62671254 62671542 -179992811 - AluSx SINE Alu -17 295 1 2248 102 3 0 chr1 62671544 62671837 -179992516 - AluSx SINE Alu -18 294 1 529 291 45 17 chr1 62672013 62672192 -179992161 - MIR3 SINE MIR -12 196 13 346 229 177 0 chr1 62672269 62672365 -179991988 - MIR SINE MIR -70 192 80 342 266 102 8 chr1 62672516 62672644 -179991709 - MIR3 SINE MIR -58 150 11 2421 86 0 0 chr1 62673094 62673397 -179990956 - AluSg SINE Alu -7 303 1 330 243 63 36 chr1 62673629 62673740 -179990613 + MIR SINE MIR 21 134 -74 302 298 84 0 chr1 62673758 62673889 -179990464 - L2 LINE L2 -6 3266 3125 533 308 13 25 chr1 62673951 62674110 -179990243 - MER91A DNA MER1_type 0 196 40 370 246 66 41 chr1 62674345 62674467 -179989886 - L2 LINE L2 0 3313 3189 285 296 8 40 chr1 62675022 62675147 -179989206 + MIR3 SINE MIR 49 169 -39 1638 219 112 2 chr1 62675706 62676116 -179988237 - MLT1J LTR MaLR -50 461 7 181 265 29 44 chr1 62676198 62676266 -179988087 - L3 LINE CR1 -2 1575 1509 302 208 65 26 chr1 62676282 62676359 -179987994 - MIR SINE MIR -63 145 66 424 285 23 8 chr1 62676552 62676682 -179987671 + MIR SINE MIR 20 151 -111 415 269 41 14 chr1 62676698 62676843 -179987510 + CT-rich Low_complexity Low_complexity 3 151 0 542 81 0 63 chr1 62676914 62677025 -179987328 + (TTTC)n Simple_repeat Simple_repeat 1 104 0 267 200 0 11 chr1 62677527 62677591 -179986762 - MIR3 SINE MIR -41 167 104 202 200 0 40 chr1 62677656 62677731 -179986622 + GA-rich Low_complexity Low_complexity 4 75 0 343 263 79 11 chr1 62677738 62677925 -179986428 - MIR SINE MIR -6 256 53 3896 143 37 29 chr1 62678043 62678425 -179985928 - L1PB4 LINE L1 -3 6153 5761 2027 134 0 17 chr1 62678425 62678717 -179985636 - AluSx SINE Alu -25 287 1 3896 143 37 29 chr1 62678717 62679033 -179985320 - L1PB4 LINE L1 -395 5761 5449 276 283 71 10 chr1 62679062 62679161 -179985192 + MIR3 SINE MIR 81 185 -23 2137 79 0 0 chr1 62679662 62679929 -179984424 - AluY SINE Alu -3 308 42 23 33 0 0 chr1 62679933 62679963 -179984390 + AT_rich Low_complexity Low_complexity 1 30 0 442 291 27 27 chr1 62680182 62680330 -179984023 - L2 LINE L2 -5 3308 3161 306 265 0 12 chr1 62680935 62681018 -179983335 + MIR SINE MIR 169 250 -12 292 360 120 12 chr1 62681265 62681507 -179982846 + L2 LINE L2 2593 2860 -454 25 0 0 0 chr1 62682195 62682220 -179982133 + AT_rich Low_complexity Low_complexity 1 25 0 318 256 115 26 chr1 62683347 62683503 -179980850 + MIR SINE MIR 32 201 -61 * 324 221 177 18 chr1 62683500 62683613 -179980740 - L2 LINE L2 -3 3269 3139 193 333 49 0 chr1 62684253 62684334 -179980019 - L2 LINE L2 -51 3221 3137 226 314 49 29 chr1 62684875 62684977 -179979376 - MIR SINE MIR -84 124 21 1792 171 21 0 chr1 62686025 62686311 -179978042 + AluJb SINE Alu 9 300 -12 276 267 56 0 chr1 62686354 62686444 -179977909 - MIR SINE MIR -94 168 74 258 271 85 50 chr1 62686518 62686697 -179977656 - MIR SINE MIR -65 197 15 190 267 0 0 chr1 62687168 62687213 -179977140 - MIR SINE MIR -133 75 31 198 320 26 13 chr1 62687228 62687306 -179977047 - L2 LINE L2 -8 3264 3186 308 338 134 10 chr1 62688057 62688258 -179976095 - MIR SINE MIR -11 251 26 185 310 88 70 chr1 62688731 62688902 -179975451 + MIR SINE MIR 25 198 -64 500 224 119 8 chr1 62689560 62689694 -179974659 + Charlie8 DNA MER1_type 1 149 -2268 341 197 28 0 chr1 62689850 62689921 -179974432 + Charlie8 DNA MER1_type 2335 2407 -10 313 215 103 0 chr1 62690349 62690456 -179973897 - MIR SINE MIR -99 163 46 310 320 82 0 chr1 62690939 62691061 -179973292 + L2 LINE L2 3182 3313 0 401 258 101 31 chr1 62691546 62691705 -179972648 + MIR SINE MIR 20 189 -73 311 228 20 69 chr1 62693159 62693260 -179971093 + MIR SINE MIR 58 153 -55 369 62 0 0 chr1 62695026 62695074 -179969279 + (TTCGG)n Simple_repeat Simple_repeat 5 52 0 183 80 0 0 chr1 62695969 62695994 -179968359 + (A)n Simple_repeat Simple_repeat 1 25 0 194 290 41 48 chr1 62695994 62696139 -179968214 - MER5A DNA MER1_type -38 151 8 208 300 167 0 chr1 62696257 62696347 -179968006 - L2 LINE L2 -16 3256 3152 229 162 0 0 chr1 62697630 62697667 -179966686 + L2 LINE L2 3220 3256 -16 2491 66 0 0 chr1 62698036 62698337 -179966016 + AluY SINE Alu 1 301 -10 182 217 11 130 chr1 62698682 62698774 -179965579 - L2 LINE L2 -1 3312 3232 303 96 0 0 chr1 62699179 62699231 -179965122 + (A)n Simple_repeat Simple_repeat 1 52 0 885 170 0 7 chr1 62699403 62699544 -179964809 - AluJo SINE Alu -161 151 12 876 211 48 29 chr1 62699875 62700084 -179964269 + MLT1B LTR MaLR 11 223 -167 525 217 0 19 chr1 62700525 62700631 -179963722 + AluSq/x SINE Alu 4 107 -205 397 313 69 6 chr1 62700932 62701092 -179963261 - MIR SINE MIR -92 170 1 373 293 47 0 chr1 62701265 62701371 -179962982 - MIR3 SINE MIR -38 170 60 971 94 0 0 chr1 62701719 62701846 -179962507 - FLAM_C SINE Alu -6 127 1 21 0 0 0 chr1 62701849 62701870 -179962483 + AT_rich Low_complexity Low_complexity 1 21 0 228 242 24 24 chr1 62702075 62702180 -179962173 + MIR SINE MIR 96 199 -9 249 314 14 0 chr1 62702479 62702549 -179961804 + L2 LINE L2 3193 3263 -9 207 253 127 25 chr1 62702679 62702758 -179961595 + L3 LINE CR1 1331 1417 -160 1333 181 15 27 chr1 62702776 62703035 -179961318 - MLT1A1 LTR MaLR -109 256 1 2455 64 0 32 chr1 62703131 62703443 -179960910 - AluY SINE Alu -9 302 1 2376 83 0 10 chr1 62704634 62704935 -179959418 - AluSx SINE Alu -14 298 1 618 291 76 8 chr1 62705510 62705747 -179958606 + MIR SINE MIR 2 254 -8 327 304 142 7 chr1 62705768 62705916 -179958437 + MIR SINE MIR 46 213 -49 2674 55 0 0 chr1 62706604 62706911 -179957442 - AluY SINE Alu -4 307 1 2986 162 45 54 chr1 62706928 62707557 -179956796 + L1MB8 LINE L1 5550 6172 -6 2370 70 3 7 chr1 62707838 62708138 -179956215 - AluSg1 SINE Alu -10 299 1 2191 107 7 3 chr1 62708386 62708685 -179955668 - AluSg SINE Alu -10 300 1 735 84 0 0 chr1 62708700 62708795 -179955558 + L1M4 LINE L1 5550 5644 -540 189 121 0 0 chr1 62708819 62708852 -179955501 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 194 205 0 0 chr1 62709304 62709343 -179955010 + L2 LINE L2 3266 3304 -9 26 0 0 0 chr1 62709956 62709982 -179954371 + AT_rich Low_complexity Low_complexity 1 26 0 221 208 21 0 chr1 62710470 62710518 -179953835 - L2 LINE L2 -11 3302 3254 312 255 112 28 chr1 62710550 62710684 -179953669 - MIR SINE MIR -63 145 3 361 171 26 0 chr1 62711055 62711131 -179953222 + MIR SINE MIR 70 147 -115 2442 95 0 0 chr1 62711257 62711563 -179952790 - AluSx SINE Alu -6 306 1 370 230 66 119 chr1 62712033 62712259 -179952094 - MIR SINE MIR -42 220 7 262 331 78 12 chr1 62712723 62712889 -179951464 + MER5B DNA MER1_type 2 178 0 254 297 0 0 chr1 62712985 62713049 -179951304 - tRNA-Ile-ATT tRNA tRNA -5 72 9 875 93 0 0 chr1 62713133 62713240 -179951113 + AluY SINE Alu 1 107 -204 231 114 0 0 chr1 62714796 62714831 -179949522 + (CA)n Simple_repeat Simple_repeat 2 36 0 257 326 189 8 chr1 62715400 62715532 -179948821 - L2 LINE L2 -20 3252 3097 303 269 85 39 chr1 62715552 62715682 -179948671 - L2 LINE L2 -1 3271 3136 386 81 20 212 chr1 62716088 62716187 -179948166 + MADE1 DNA Mariner 1 80 0 260 325 63 8 chr1 62716461 62716587 -179947766 - MIR SINE MIR -80 182 50 182 270 241 23 chr1 62717366 62717540 -179946813 - MIR SINE MIR -18 244 33 259 245 21 11 chr1 62717841 62717935 -179946418 + GA-rich Low_complexity Low_complexity 1 95 0 619 203 8 16 chr1 62717954 62718077 -179946276 + FLAM_C SINE Alu 11 132 -11 1963 170 0 3 chr1 62718383 62718694 -179945659 - AluJb SINE Alu -2 310 1 2348 99 7 0 chr1 62718706 62719008 -179945345 - AluSx SINE Alu 0 312 9 360 188 0 0 chr1 62719008 62719068 -179945285 - Alu SINE Alu -247 55 2 260 359 42 7 chr1 62719336 62719478 -179944875 + MIR SINE MIR 31 177 -85 * 287 258 0 0 chr1 62719477 62719543 -179944810 + MIR3 SINE MIR 100 165 -43 449 311 129 0 chr1 62720248 62720457 -179943896 - MIR SINE MIR -19 243 8 245 313 9 9 chr1 62721540 62721655 -179942698 + MER103 DNA DNA 42 156 -10 22 0 0 0 chr1 62722141 62722163 -179942190 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr1 62722165 62722186 -179942167 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 207 269 69 91 chr1 62723426 62723566 -179940787 - MIR SINE MIR -6 256 118 2009 145 0 0 chr1 62723566 62723892 -179940461 - AluSx SINE Alu 0 326 1 207 269 69 91 chr1 62723892 62723925 -179940428 - MIR SINE MIR -144 118 86 355 216 96 132 chr1 62724497 62724664 -179939689 - MIR3 SINE MIR -11 197 37 187 304 130 0 chr1 62725325 62725394 -179938959 + L2 LINE L2 3107 3184 -88 2134 108 24 0 chr1 62726370 62726666 -179937687 - AluSx SINE Alu -9 303 1 229 289 60 0 chr1 62726709 62726792 -179937561 - MIR SINE MIR -119 143 56 1860 189 77 83 chr1 62727637 62728145 -179936208 - MLT1D LTR MaLR 0 505 1 254 411 33 13 chr1 62728242 62728393 -179935960 + L2 LINE L2 3119 3272 0 270 230 80 9 chr1 62728397 62728510 -179935843 + MIR3 SINE MIR 76 196 -12 343 302 95 12 chr1 62730648 62730817 -179933536 + MIR3 SINE MIR 17 199 -9 32 43 0 0 chr1 62732441 62732487 -179931866 + AT_rich Low_complexity Low_complexity 1 46 0 884 202 85 77 chr1 62733463 62733893 -179930460 - MLT1D LTR MaLR 0 505 3 1092 236 24 139 chr1 62733895 62734218 -179930135 - MLT1D-int LTR MaLR 0 1371 1012 2380 71 7 3 chr1 62734218 62734514 -179929839 + AluY SINE Alu 1 297 -14 1092 236 24 139 chr1 62734514 62734582 -179929771 - MLT1D-int LTR MaLR -359 1012 1049 2183 114 7 16 chr1 62734582 62734889 -179929464 + AluSx SINE Alu 1 304 -8 1092 236 24 139 chr1 62734889 62735005 -179929348 - MLT1D-int LTR MaLR -321 1050 922 321 214 31 84 chr1 62735358 62735503 -179928850 + MIR SINE MIR 8 145 -63 404 232 161 65 chr1 62735559 62735727 -179928626 + MER5A DNA MER1_type 4 187 -2 237 286 188 0 chr1 62736627 62736760 -179927593 - MIR3 SINE MIR -15 193 36 2804 128 5 27 chr1 62737109 62737553 -179926800 - Tigger2a DNA MER2_type 0 434 1 223 216 138 73 chr1 62737581 62737765 -179926588 + MIR SINE MIR 1 201 -61 674 266 106 14 chr1 62737873 62738080 -179926273 + MER112 DNA MER1_type 1 226 -34 186 303 61 0 chr1 62738292 62738358 -179925995 - L2 LINE L2 -300 2972 2903 568 220 0 0 chr1 62738697 62738806 -179925547 - FLAM_A SINE Alu -33 109 1 1724 141 39 14 chr1 62738916 62739199 -179925154 + AluSx SINE Alu 1 290 -22 2176 99 34 0 chr1 62739291 62739583 -179924770 - AluSp SINE Alu -11 302 1 204 278 19 0 chr1 62740359 62740413 -179923940 - MIR SINE MIR -159 103 49 438 247 133 12 chr1 62740440 62740606 -179923747 - MER5A DNA MER1_type -1 188 3 945 201 11 0 chr1 62741416 62741590 -179922763 + L1MB5 LINE L1 5939 6114 -60 29 0 0 0 chr1 62741954 62741983 -179922370 + AT_rich Low_complexity Low_complexity 1 29 0 1977 121 11 0 chr1 62741987 62742267 -179922086 - AluSx SINE Alu -29 283 1 543 314 51 91 chr1 62742396 62742845 -179921508 + L2 LINE L2 2838 3268 -4 207 364 42 25 chr1 62743496 62743614 -179920739 - L2 LINE L2 -11 3261 3142 2326 108 0 0 chr1 62744058 62744355 -179919998 + AluSg SINE Alu 1 297 -13 7152 64 25 0 chr1 62744585 62745535 -179918818 - L1P LINE L1 -2848 3298 2325 * 9275 104 0 2 chr1 62745533 62746758 -179917595 + THE1-int LTR MaLR 358 1580 0 189 0 0 0 chr1 62746787 62746808 -179917545 + (A)n Simple_repeat Simple_repeat 1 21 0 1649 166 12 4 chr1 62746811 62747070 -179917283 + AluSx SINE Alu 3 263 -49 524 155 12 0 chr1 62747194 62747278 -179917075 - MLT2D LTR ERVL -302 112 28 886 268 75 23 chr1 62747454 62747760 -179916593 - HERV16 LTR ERVL -4324 672 351 2167 118 0 7 chr1 62748025 62748321 -179916032 - AluSq SINE Alu -19 294 1 1079 90 0 0 chr1 62748325 62748458 -179915895 - AluSq/x SINE Alu -179 133 1 413 172 46 0 chr1 62748458 62748545 -179915808 - L1MEc LINE L1 -4679 1717 1627 31 0 0 0 chr1 62748545 62748576 -179915777 + AT_rich Low_complexity Low_complexity 1 31 0 590 259 172 52 chr1 62748630 62749361 -179914992 - L1MEc LINE L1 -4750 1646 828 355 231 0 44 chr1 62750438 62750529 -179913824 - L2 LINE L2 0 3272 3186 188 260 55 55 chr1 62750855 62750928 -179913425 - L2 LINE L2 -46 3267 3195 647 296 88 0 chr1 62750934 62751174 -179913179 - MIR SINE MIR 0 262 2 281 188 58 87 chr1 62751479 62751617 -179912736 - L1ME4a LINE L1 -2 6119 5986 1804 138 83 44 chr1 62751617 62751978 -179912375 - THE1C LTR MaLR 0 375 1 7195 141 167 15 chr1 62752171 62752248 -179912105 - THE1C-int LTR MaLR -39 1541 1477 2282 111 0 0 chr1 62752248 62752546 -179911807 + AluSq SINE Alu 1 298 -15 7195 141 167 15 chr1 62752546 62753806 -179910547 - THE1C-int LTR MaLR -103 1477 1 1392 130 47 80 chr1 62753807 62754107 -179910246 - THE1C LTR MaLR 0 375 86 222 167 24 0 chr1 62755167 62755209 -179909144 + (TA)n Simple_repeat Simple_repeat 1 43 0 197 33 33 0 chr1 62755799 62755829 -179908524 + (TA)n Simple_repeat Simple_repeat 2 32 0 324 271 60 78 chr1 62756358 62756524 -179907829 - MIR SINE MIR -43 219 57 1157 78 0 78 chr1 62756648 62756772 -179907581 + AluY SINE Alu 21 130 -181 2296 93 3 3 chr1 62756772 62757074 -179907279 + AluSc SINE Alu 1 302 -7 1157 78 0 78 chr1 62757074 62757115 -179907238 + AluY SINE Alu 130 173 -138 430 240 100 26 chr1 62757292 62757516 -179906837 + L1MEc LINE L1 1168 1384 -4988 326 211 99 58 chr1 62758170 62758324 -179906029 + L1MEc LINE L1 1267 1510 -4862 372 262 38 105 chr1 62758417 62758627 -179905726 + L1MEc LINE L1 1611 1806 -4757 2420 77 0 3 chr1 62758627 62758924 -179905429 + AluSg SINE Alu 1 296 -14 1694 152 45 45 chr1 62759047 62759357 -179904996 + AluSg SINE Alu 1 310 0 1346 99 0 80 chr1 62760052 62760203 -179904150 + AluSx SINE Alu 1 134 -178 1652 103 22 116 chr1 62760203 62760514 -179903839 + AluYb8 SINE Alu 25 306 -12 1346 99 0 80 chr1 62760514 62760563 -179903790 + AluSx SINE Alu 134 185 -127 221 326 157 14 chr1 62760730 62760877 -179903476 - MIR3 SINE MIR -21 187 20 1388 122 26 39 chr1 62761183 62761413 -179902940 + THE1B LTR MaLR 1 227 -137 1152 72 18 0 chr1 62761519 62761686 -179902667 + L1PA7 LINE L1 5054 5223 -923 6989 50 17 12 chr1 62761780 62762717 -179901636 + L1PA7 LINE L1 5206 6146 -8 375 23 0 0 chr1 62762721 62762765 -179901588 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 301 312 32 57 chr1 62762960 62763007 -179901346 - MIR3 SINE MIR -34 174 127 2342 105 3 0 chr1 62763007 62763311 -179901042 + AluSx SINE Alu 1 305 -7 301 312 32 57 chr1 62763311 62763420 -179900933 - MIR3 SINE MIR -81 127 22 1997 90 93 4 chr1 62763485 62763763 -179900590 + AluSx SINE Alu 1 303 -9 1948 238 30 22 chr1 62763887 62764395 -179899958 + L2 LINE L2 2282 2793 -521 402 129 161 11 chr1 62764395 62764488 -179899865 + L1M4 LINE L1 5690 5796 -388 180 125 0 0 chr1 62765379 62765411 -179898942 + (TA)n Simple_repeat Simple_repeat 2 33 0 804 191 8 0 chr1 62765412 62765543 -179898810 - FLAM_C SINE Alu 0 133 2 798 161 0 0 chr1 62765705 62765823 -179898530 - MSTB1 LTR MaLR -310 122 5 401 247 99 17 chr1 62766170 62766412 -179897941 + L1MDb LINE L1 1135 1408 -4988 326 211 99 58 chr1 62767068 62767222 -179897131 + L1MDb LINE L1 1291 1534 -4862 390 262 38 105 chr1 62767315 62767525 -179896828 + L1MDb LINE L1 1635 1830 -4757 2301 85 7 0 chr1 62767525 62767829 -179896524 + AluSx SINE Alu 1 306 0 348 85 0 0 chr1 62767829 62767876 -179896477 + Alu SINE Alu 246 292 -8 461 301 33 0 chr1 62767894 62768077 -179896276 + L1MDb LINE L1 1825 2013 -4574 336 330 81 16 chr1 62768089 62768274 -179896079 + L1MDb LINE L1 2074 2270 -4317 774 141 0 0 chr1 62768731 62768852 -179895501 - AluJo SINE Alu -2 310 190 932 190 0 0 chr1 62768866 62769029 -179895324 - AluSg/x SINE Alu -9 303 141 1199 144 0 40 chr1 62769031 62769232 -179895121 - AluJo SINE Alu -119 193 1 2044 143 3 10 chr1 62769342 62769650 -179894703 + AluSx SINE Alu 1 306 -6 29 28 0 0 chr1 62769652 62769688 -179894665 + AT_rich Low_complexity Low_complexity 1 36 0 1623 160 56 0 chr1 62769785 62770053 -179894300 + AluJb SINE Alu 16 298 -14 289 211 0 0 chr1 62770342 62770394 -179893959 + L2 LINE L2 3221 3272 0 253 263 138 0 chr1 62770874 62770954 -179893399 + MIR SINE MIR 121 211 -51 1372 227 109 23 chr1 62771383 62771779 -179892574 - L1ME3A LINE L1 -63 6107 5678 29 28 0 0 chr1 62771819 62771855 -179892498 + AT_rich Low_complexity Low_complexity 1 36 0 333 57 14 43 chr1 62772472 62772542 -179891811 - HSMAR2 DNA Mariner -7 1295 1228 7361 127 30 35 chr1 62772578 62772594 -179891759 - HSMAR2 DNA Mariner -43 1259 1244 764 131 0 33 chr1 62772594 62772716 -179891637 - FLAM_C SINE Alu -15 118 1 7361 127 30 35 chr1 62772716 62773197 -179891156 - HSMAR2 DNA Mariner -58 1244 762 1522 148 42 25 chr1 62773197 62773518 -179890835 - AluJo SINE Alu 0 326 1 7361 127 30 35 chr1 62773518 62773947 -179890406 - HSMAR2 DNA Mariner -540 762 335 1723 186 7 0 chr1 62773947 62774243 -179890110 + AluJo SINE Alu 1 298 -14 7361 127 30 35 chr1 62774243 62774568 -179889785 - HSMAR2 DNA Mariner -967 335 10 25 51 0 0 chr1 62774625 62774664 -179889689 + AT_rich Low_complexity Low_complexity 1 39 0 223 371 0 27 chr1 62774786 62774938 -179889415 + MIR SINE MIR 31 176 -32 375 105 0 0 chr1 62774985 62775042 -179889311 + (CA)n Simple_repeat Simple_repeat 2 58 0 1954 122 30 24 chr1 62775207 62775503 -179888850 - AluSx SINE Alu -14 298 1 1213 212 9 52 chr1 62775642 62775972 -179888381 - L1ME3A LINE L1 -502 5668 5353 426 289 62 16 chr1 62776312 62776440 -179887913 - L2 LINE L2 -1 3271 3138 183 299 169 0 chr1 62776715 62776792 -179887561 - L2 LINE L2 -9 3263 3174 341 335 193 15 chr1 62777663 62777860 -179886493 + MIR SINE MIR 2 233 -29 1956 34 0 0 chr1 62778319 62778556 -179885797 + L1PA2 LINE L1 5918 6154 -1 429 322 0 0 chr1 62779163 62779278 -179885075 - L3 LINE CR1 -11 1566 1452 2220 101 28 0 chr1 62779306 62779594 -179884759 + AluSx SINE Alu 1 296 -16 263 165 18 220 chr1 62779599 62779708 -179884645 + MIR SINE MIR 29 115 -147 292 280 40 0 chr1 62779993 62780068 -179884285 - L3 LINE CR1 -239 1338 1261 418 289 103 16 chr1 62780367 62780561 -179883792 - MLT1J LTR MaLR -14 497 287 604 236 21 58 chr1 62780603 62780794 -179883559 - MLT1J LTR MaLR -317 194 11 262 258 15 0 chr1 62781766 62781832 -179882521 - L3 LINE CR1 -124 1453 1387 664 245 167 5 chr1 62781859 62782051 -179882302 + MIR SINE MIR 29 251 -11 1970 155 3 0 chr1 62782236 62782546 -179881807 - AluJb SINE Alu -1 311 1 1755 153 11 11 chr1 62783234 62783521 -179880832 + AluJb SINE Alu 14 300 -12 295 349 48 0 chr1 62784282 62784365 -179879988 - L2 LINE L2 -49 3223 3137 469 317 94 17 chr1 62785509 62785689 -179878664 - MIR SINE MIR -51 211 18 1824 187 57 72 chr1 62786256 62786769 -179877584 + MLT1D LTR MaLR 1 505 0 1822 154 13 7 chr1 62787779 62788084 -179876269 - AluSx SINE Alu -3 309 3 2423 83 0 3 chr1 62788823 62789123 -179875230 - AluSc SINE Alu -10 299 1 535 364 68 46 chr1 62789129 62789742 -179874611 + L2 LINE L2 1932 2558 -756 204 288 102 68 chr1 62789750 62789864 -179874489 + L2 LINE L2 2909 3033 -239 2485 154 16 21 chr1 62789864 62790300 -179874053 + Tigger2a DNA MER2_type 1 434 0 204 288 102 68 chr1 62790300 62790362 -179873991 + L2 LINE L2 3033 3091 -181 859 275 114 66 chr1 62790479 62790493 -179873860 - L2 LINE L2 -5 3308 3296 8131 38 4 0 chr1 62790493 62792262 -179872091 - L1PA5 LINE L1 -5 6149 4376 859 275 114 66 chr1 62792262 62792909 -179871444 - L2 LINE L2 -17 3296 2582 983 213 51 0 chr1 62792909 62793106 -179871247 - MER3 DNA MER1_type -2 207 1 859 275 114 66 chr1 62793106 62793403 -179870950 - L2 LINE L2 -731 2582 2301 309 255 21 106 chr1 62793657 62793798 -179870555 - L2 LINE L2 -45 3268 3140 4295 239 120 29 chr1 62793806 62795180 -179869173 - L2 LINE L2 -302 3011 1521 231 269 15 0 chr1 62795180 62795247 -179869106 - L2 LINE L2 -2526 788 721 472 252 48 0 chr1 62795255 62795358 -179868995 - L2 LINE L2 -1100 2214 2107 317 355 97 16 chr1 62795371 62795557 -179868796 - L2 LINE L2 -2606 708 508 652 213 104 79 chr1 62795645 62796011 -179868342 + L1MC5 LINE L1 7188 7562 -399 464 224 142 60 chr1 62796425 62796545 -179867808 + L1ME3A LINE L1 5566 5675 -495 2388 166 31 12 chr1 62796545 62796962 -179867391 - MSTB LTR MaLR -1 425 1 464 224 142 60 chr1 62796962 62797013 -179867340 + L1ME3A LINE L1 5675 5720 -450 2363 93 3 0 chr1 62797013 62797313 -179867040 - AluSp SINE Alu -12 301 1 464 224 142 60 chr1 62797313 62797421 -179866932 + L1ME3A LINE L1 5720 5869 -301 290 354 82 32 chr1 62798632 62798790 -179865563 - L2 LINE L2 -232 3040 2875 235 300 181 0 chr1 62798938 62799084 -179865269 + L2 LINE L2 3134 3292 -21 2146 113 0 7 chr1 62799565 62799865 -179864488 + AluSx SINE Alu 1 298 -14 420 37 0 0 chr1 62800013 62800067 -179864286 + (CA)n Simple_repeat Simple_repeat 2 55 0 898 199 151 50 chr1 62800135 62800294 -179864059 - L1MC5 LINE L1 -106 7855 7713 2490 53 0 20 chr1 62800294 62800598 -179863755 - AluY SINE Alu -13 298 1 898 199 151 50 chr1 62800598 62800876 -179863477 - L1MC5 LINE L1 -248 7713 7374 303 193 14 0 chr1 62800887 62800954 -179863399 - FLAM SINE Alu -4 129 84 520 147 0 0 chr1 62801101 62801176 -179863177 - AluJ/FLAM SINE Alu -237 75 1 25 31 0 0 chr1 62801959 62801991 -179862362 + AT_rich Low_complexity Low_complexity 1 32 0 1976 134 45 0 chr1 62802158 62802449 -179861904 - AluSx SINE Alu -8 304 1 24 67 0 0 chr1 62802769 62802814 -179861539 + AT_rich Low_complexity Low_complexity 1 45 0 1951 158 39 11 chr1 62804600 62804955 -179859398 - MLT1A1 LTR MaLR 0 365 1 244 0 27 27 chr1 62805296 62805333 -179859020 + (TA)n Simple_repeat Simple_repeat 2 38 0 1780 167 17 0 chr1 62805333 62805620 -179858733 - AluJb SINE Alu -20 292 1 325 392 81 42 chr1 62806366 62806772 -179857581 + L2 LINE L2 2837 3258 -14 1835 155 0 45 chr1 62807142 62807451 -179856902 - AluJb SINE Alu -15 297 3 698 202 0 0 chr1 62807810 62807934 -179856419 + FLAM_C SINE Alu 1 124 -19 22 0 0 0 chr1 62807934 62807956 -179856397 + AT_rich Low_complexity Low_complexity 1 22 0 874 141 0 15 chr1 62808211 62808346 -179856007 - FLAM_C SINE Alu 0 133 1 220 179 0 0 chr1 62808489 62808528 -179855825 - MIR SINE MIR -119 143 105 186 240 0 80 chr1 62808611 62808661 -179855692 + L2 LINE L2 3218 3263 -9 186 311 34 92 chr1 62808632 62808751 -179855602 - MIR SINE MIR -150 112 1 514 264 55 0 chr1 62808928 62809038 -179855315 - L2 LINE L2 -1 3271 3156 185 287 149 11 chr1 62809084 62809171 -179855182 + MIR SINE MIR 7 105 -157 292 228 13 13 chr1 62809205 62809284 -179855069 - MER116 DNA Mariner -1 79 1 2343 181 48 6 chr1 62809713 62810238 -179854115 - L1MB7 LINE L1 0 6184 5638 3682 230 13 57 chr1 62810253 62811237 -179853116 - L1M4 LINE L1 -5571 971 31 1266 96 0 0 chr1 62811376 62811533 -179852820 + AluSg/x SINE Alu 135 291 -21 2192 75 24 17 chr1 62811745 62812037 -179852316 + AluY SINE Alu 2 295 -16 590 330 97 44 chr1 62812141 62812203 -179852150 + L2 LINE L2 2578 2635 -678 2535 62 3 0 chr1 62812203 62812511 -179851842 - AluSp SINE Alu -3 310 2 590 330 97 44 chr1 62812511 62813082 -179851271 + L2 LINE L2 2635 3252 -61 1089 179 99 77 chr1 62813298 62813701 -179850652 - Charlie1 DNA MER1_type -1 2760 2349 1148 176 53 4 chr1 62813702 62813929 -179850424 - Charlie1 DNA MER1_type -706 2055 1818 378 222 0 37 chr1 62813934 62814015 -179850338 - MIR SINE MIR -93 115 38 1899 126 30 13 chr1 62815525 62815827 -179848526 - AluJb SINE Alu -3 309 3 235 330 28 47 chr1 62815860 62815966 -179848387 + L3 LINE CR1 1447 1550 -27 412 271 14 76 chr1 62817052 62817196 -179847157 + MER5A DNA MER1_type 16 150 -39 30 27 0 0 chr1 62818995 62819032 -179845321 + AT_rich Low_complexity Low_complexity 1 37 0 359 243 90 35 chr1 62820441 62820585 -179843768 - MER103 DNA DNA -2 164 13 288 342 9 9 chr1 62821825 62821936 -179842417 + MIR3 SINE MIR 83 193 -15 2058 136 10 3 chr1 62822699 62823008 -179841345 + AluSx SINE Alu 1 311 -1 189 0 0 0 chr1 62823978 62823999 -179840354 + (A)n Simple_repeat Simple_repeat 1 21 0 283 187 173 13 chr1 62824406 62824481 -179839872 + MIR SINE MIR 95 181 -81 1493 262 82 32 chr1 62825628 62826090 -179838263 - MLT1E2 LTR MaLR 0 626 142 229 277 43 11 chr1 62826239 62826333 -179838020 - L1ME4a LINE L1 0 6121 6025 2299 110 0 16 chr1 62827275 62827592 -179836761 - AluSx SINE Alu 0 312 1 196 368 76 35 chr1 62828041 62828212 -179836141 + L2 LINE L2 2447 2624 -690 1284 113 5 10 chr1 62830734 62830929 -179833424 - L1PA10 LINE L1 -2 6166 5973 347 220 13 120 chr1 62831406 62831556 -179832797 - MER94 DNA DNA 0 134 1 223 395 88 14 chr1 62831603 62831818 -179832535 + L2 LINE L2 2617 2847 -467 203 175 0 25 chr1 62832015 62832055 -179832298 + L2 LINE L2 3187 3225 -47 383 346 53 63 chr1 62832405 62832984 -179831369 - L2 LINE L2 -5 3267 2717 208 241 111 0 chr1 62832994 62833048 -179831305 + L2 LINE L2 3198 3257 -15 233 273 0 0 chr1 62833173 62833228 -179831125 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 306 50 0 0 chr1 62833329 62833369 -179830984 + (CA)n Simple_repeat Simple_repeat 1 40 0 270 250 98 33 chr1 62833439 62833531 -179830822 - L2 LINE L2 -202 3070 2973 21 0 0 0 chr1 62833924 62833945 -179830408 + AT_rich Low_complexity Low_complexity 1 21 0 226 383 175 13 chr1 62834558 62834861 -179829492 + L2 LINE L2 2507 2858 -456 2416 129 45 28 chr1 62834934 62835359 -179828994 + MSTB1 LTR MaLR 1 432 0 397 311 53 0 chr1 62836447 62836579 -179827774 - MIR SINE MIR -56 206 68 455 201 0 4 chr1 62836847 62836988 -179827365 - MER58B DNA MER1_type -25 316 1 270 295 0 0 chr1 62837238 62837299 -179827054 - MIR SINE MIR -30 232 172 819 266 55 15 chr1 62837391 62837671 -179826682 + L1ME LINE L1 5555 5839 -348 892 207 30 0 chr1 62837997 62838166 -179826187 + FAM SINE Alu 2 175 0 474 371 79 16 chr1 62838533 62838786 -179825567 - L2 LINE L2 -51 3221 2953 697 272 66 35 chr1 62838794 62839081 -179825272 + L2 LINE L2 3014 3309 -4 430 347 143 19 chr1 62839093 62839554 -179824799 - L2 LINE L2 -366 2948 2431 3141 212 21 41 chr1 62839619 62841099 -179823254 + L1MA5A LINE L1 2454 3825 -2321 531 143 0 36 chr1 62841118 62841202 -179823151 + AluJb SINE Alu 199 279 -33 216 0 0 0 chr1 62841206 62841230 -179823123 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 203 299 128 8 chr1 62841340 62841457 -179822896 + MIR3 SINE MIR 6 136 -72 30 0 0 0 chr1 62841461 62841491 -179822862 + AT_rich Low_complexity Low_complexity 1 30 0 801 153 0 0 chr1 62841491 62841609 -179822744 - FLAM_C SINE Alu -25 118 1 243 263 35 0 chr1 62841755 62841812 -179822541 - MER90 LTR ERV1 0 614 556 8082 160 24 7 chr1 62841814 62843338 -179821015 + L1MA5A LINE L1 3829 5378 -768 * 8762 62 19 2 chr1 62843335 62844519 -179819834 - L1P LINE L1 -2768 3378 2174 3425 53 2 7 chr1 62844519 62844954 -179819399 + L1PA6 LINE L1 5718 6151 -3 5488 124 22 13 chr1 62844961 62845668 -179818685 + L1MA5A LINE L1 5366 6084 -213 1699 148 91 26 chr1 62845668 62846020 -179818333 + THE1C LTR MaLR 1 375 0 5488 124 22 13 chr1 62846020 62846231 -179818122 + L1MA5A LINE L1 6084 6292 -5 268 321 75 67 chr1 62846337 62846471 -179817882 - L2 LINE L2 -1367 1947 1813 1613 199 34 0 chr1 62846554 62846845 -179817508 - AluJb SINE Alu -11 301 1 223 219 0 0 chr1 62848215 62848256 -179816097 - L2 LINE L2 -16 3256 3216 278 342 66 58 chr1 62848969 62849360 -179814993 - L2 LINE L2 -181 3091 2699 2036 163 25 0 chr1 62849728 62850085 -179814268 + MER47A DNA MER2_type 1 366 0 266 276 14 110 chr1 62850131 62850276 -179814077 - MIR3 SINE MIR -53 155 25 1265 205 8 4 chr1 62850997 62851256 -179813097 + L1PB4 LINE L1 5896 6155 -1 215 358 0 62 chr1 62852680 62852761 -179811592 - L2 LINE L2 -33 3239 3164 357 338 104 0 chr1 62852859 62853013 -179811340 + MIR3 SINE MIR 37 206 -2 1337 137 74 4 chr1 62853067 62853337 -179811016 - L1MA8 LINE L1 0 6291 6003 451 360 145 20 chr1 62853355 62853905 -179810448 - L2 LINE L2 0 3313 2692 319 247 116 41 chr1 62854532 62854678 -179809675 + MIR SINE MIR 82 238 -24 356 243 144 0 chr1 62854688 62854799 -179809554 + L2 LINE L2 2078 2204 -1110 2355 264 85 17 chr1 62855385 62856395 -179807958 + L2 LINE L2 2224 3307 -6 310 245 13 93 chr1 62856407 62856558 -179807795 - L1MEd LINE L1 -3963 2166 2028 2004 237 52 7 chr1 62856577 62857121 -179807232 - L1ME3A LINE L1 -147 6023 5456 6868 56 7 0 chr1 62857385 62858701 -179805652 - L1PA8 LINE L1 -2 6170 4829 733 257 74 62 chr1 62858910 62859855 -179804498 - L1MEd LINE L1 -4528 1670 693 233 332 84 26 chr1 62860139 62860329 -179804024 - L2 LINE L2 0 3313 3113 380 269 126 22 chr1 62860519 62860701 -179803652 + MLT1K LTR MaLR 387 587 -1 537 310 47 22 chr1 62860838 62861049 -179803304 - MIR SINE MIR -2 206 1 287 200 44 89 chr1 62861049 62861104 -179803249 + L2 LINE L2 3262 3312 -1 200 359 39 39 chr1 62861465 62861568 -179802785 + L2 LINE L2 3146 3248 -24 309 326 128 0 chr1 62861615 62861756 -179802597 - MIR SINE MIR -73 189 31 212 186 119 0 chr1 62863555 62863614 -179800739 - MIR SINE MIR -99 163 98 529 250 86 0 chr1 62863619 62863759 -179800594 + MER96 DNA MER1_type? 24 175 0 187 338 97 59 chr1 62864328 62864719 -179799634 + L2 LINE L2 2807 3212 -60 211 298 117 11 chr1 62864895 62864989 -179799364 + L2 LINE L2 3210 3313 0 352 315 60 47 chr1 62865670 62865819 -179798534 + L2 LINE L2 3115 3265 -7 307 271 82 0 chr1 62866828 62866913 -179797440 + MIR SINE MIR 96 187 -75 21 0 0 0 chr1 62867241 62867262 -179797091 + AT_rich Low_complexity Low_complexity 1 21 0 196 301 108 11 chr1 62867635 62867728 -179796625 - L2 LINE L2 -8 3264 3163 1770 152 0 44 chr1 62867738 62868208 -179796145 - AluJb SINE Alu 0 457 1 207 278 0 19 chr1 62868218 62868272 -179796081 - MIR SINE MIR -65 143 91 * 340 244 213 25 chr1 62868258 62868455 -179795898 - MIR SINE MIR -27 235 2 1944 174 39 0 chr1 62869409 62869743 -179794610 - MER7A DNA MER2_type 0 346 2 447 269 48 21 chr1 62869774 62869919 -179794434 + MIR SINE MIR 49 197 -65 2024 130 7 3 chr1 62869930 62870229 -179794124 + AluSg1 SINE Alu 1 300 -9 276 291 136 9 chr1 62870779 62870889 -179793464 - MIR SINE MIR -65 197 74 23 0 0 0 chr1 62871344 62871367 -179792986 + AT_rich Low_complexity Low_complexity 1 23 0 543 238 111 17 chr1 62871369 62871541 -179792812 - MIR SINE MIR -6 256 69 277 204 0 19 chr1 62871899 62871953 -179792400 + CT-rich Low_complexity Low_complexity 3 55 0 4834 219 37 74 chr1 62872010 62873978 -179790375 - L1M4 LINE L1 -1146 5000 3106 1512 204 106 44 chr1 62873972 62874083 -179790270 - L1MDa LINE L1 -4797 1743 1640 * 2148 127 0 10 chr1 62874083 62874383 -179789970 - AluSq SINE Alu -16 297 1 1512 204 106 44 chr1 62874383 62874868 -179789485 - L1MDa LINE L1 -4900 1640 1110 1383 189 104 15 chr1 62874874 62875202 -179789151 - MLT1A2 LTR MaLR -17 357 1 3906 204 48 19 chr1 62875202 62876053 -179788300 - L1MDa LINE L1 -5647 893 18 613 233 157 13 chr1 62876224 62876383 -179787970 + MER5A DNA MER1_type 8 189 0 2470 62 0 13 chr1 62876557 62876866 -179787487 - AluY SINE Alu -6 305 1 267 300 131 51 chr1 62877053 62877290 -179787063 + MIR SINE MIR 7 262 0 533 354 69 69 chr1 62878160 62878914 -179785439 + L1ME3A LINE L1 96 849 -5356 512 215 29 106 chr1 62879062 62879151 -179785202 + L1ME3A LINE L1 1002 1096 -5109 180 77 0 0 chr1 62879151 62879177 -179785176 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1767 164 0 7 chr1 62879180 62879461 -179784892 - AluJb SINE Alu -24 288 10 512 215 29 106 chr1 62879461 62879678 -179784675 + L1ME3A LINE L1 1098 1288 -4917 314 314 134 27 chr1 62879768 62880029 -179784324 + L1ME3A LINE L1 2023 2311 -4085 274 330 72 25 chr1 62880258 62880815 -179783538 + L1ME3A LINE L1 3410 3992 -2223 673 289 81 34 chr1 62880915 62881531 -179782822 + L1ME3A LINE L1 5358 6008 -231 228 163 0 0 chr1 62881736 62881779 -179782574 + (TTAGGG)n Simple_repeat Simple_repeat 5 47 0 345 302 90 36 chr1 62882766 62882931 -179781422 + MIR SINE MIR 19 191 -67 249 277 0 15 chr1 62883525 62883590 -179780763 - MIR SINE MIR -2 260 197 227 274 16 0 chr1 62883590 62883652 -179780701 + MIR SINE MIR 70 132 -130 238 293 278 21 chr1 62884317 62884508 -179779845 + MIR SINE MIR 2 241 -21 298 327 9 0 chr1 62884644 62884754 -179779599 + (TA)n Simple_repeat Simple_repeat 1 111 0 1804 177 80 30 chr1 62884784 62885323 -179779030 + MLT2A2 LTR ERVL 1 554 0 489 226 236 46 chr1 62885616 62885811 -179778542 - MIR SINE MIR -26 236 5 579 210 49 50 chr1 62886069 62886258 -179778095 - MIR3 SINE MIR -56 206 6 194 275 138 0 chr1 62886807 62886887 -179777466 - MIR SINE MIR -92 116 26 430 221 63 138 chr1 62886952 62887081 -179777272 - MIR SINE MIR -12 250 148 2781 10 0 3 chr1 62887081 62887393 -179776960 + AluYa5 SINE Alu 1 311 0 430 221 63 138 chr1 62887393 62887516 -179776837 - MIR SINE MIR -114 148 17 763 333 76 33 chr1 62887969 62888571 -179775782 + L2 LINE L2 2650 3290 -23 246 330 98 17 chr1 62888667 62888840 -179775513 - L2 LINE L2 -21 3292 3106 581 241 121 0 chr1 62888902 62889068 -179775285 + L2 LINE L2 3128 3313 0 308 299 72 36 chr1 62889080 62889274 -179775079 - L2 LINE L2 -301 3012 2812 192 278 56 56 chr1 62889461 62889551 -179774802 - L2 LINE L2 -189 3083 2994 212 351 135 0 chr1 62889823 62889934 -179774419 - L2 LINE L2 0 3313 3188 189 372 35 9 chr1 62890603 62890716 -179773637 + MIR SINE MIR 2 117 -145 245 257 86 50 chr1 62891436 62891576 -179772777 + L2 LINE L2 2442 2586 -728 439 211 128 9 chr1 62891581 62891690 -179772663 + MIR SINE MIR 97 218 -44 694 301 106 55 chr1 62891721 62892114 -179772239 + L2 LINE L2 2610 3050 -263 1233 163 49 0 chr1 62892114 62892378 -179771975 - L1MA4 LINE L1 -3 6297 6021 694 301 106 55 chr1 62892378 62892477 -179771876 + L2 LINE L2 3050 3142 -171 322 366 126 6 chr1 62893297 62893472 -179770881 - MIR SINE MIR -44 218 23 203 323 55 55 chr1 62893647 62893811 -179770542 + L3 LINE CR1 1226 1389 -188 363 239 23 11 chr1 62893854 62893942 -179770411 + L2 LINE L2 3225 3313 0 415 319 7 0 chr1 62894062 62894200 -179770153 - MIR SINE MIR -5 257 119 250 321 2 2 chr1 62894375 62894456 -179769897 - MIR SINE MIR -85 123 43 248 291 0 0 chr1 62894862 62894917 -179769436 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 193 353 167 13 chr1 62895739 62895895 -179768458 + L2 LINE L2 2796 2975 -339 371 265 121 104 chr1 62895951 62896363 -179767990 + MLT1H LTR MaLR 4 422 -127 263 368 45 0 chr1 62896722 62896877 -179767476 + MIR SINE MIR 95 256 -6 201 380 54 54 chr1 62897465 62897686 -179766667 + L2 LINE L2 3047 3267 -5 557 180 50 111 chr1 62897691 62897911 -179766442 - MIR SINE MIR -11 251 50 1146 153 16 0 chr1 62898126 62898309 -179766044 + MER5A DNA MER1_type 1 186 -3 338 283 9 19 chr1 62899326 62899432 -179764921 + L2 LINE L2 2630 2734 -580 468 329 74 62 chr1 62899644 62899969 -179764384 + L2 LINE L2 2935 3263 -9 330 327 0 0 chr1 62900523 62900633 -179763720 - MIR SINE MIR 0 262 153 227 296 14 0 chr1 62900635 62900706 -179763647 + CT-rich Low_complexity Low_complexity 4 75 0 1136 287 68 23 chr1 62900707 62901265 -179763088 - L2 LINE L2 0 3313 2729 258 281 62 21 chr1 62901294 62901390 -179762963 - L2 LINE L2 -2 3311 3212 1929 164 21 0 chr1 62901390 62901677 -179762676 - AluSg SINE Alu -17 293 1 265 331 73 20 chr1 62901725 62901876 -179762477 - L2 LINE L2 -783 2531 2373 281 345 0 0 chr1 62901882 62901966 -179762387 - MIR SINE MIR -132 130 47 232 24 49 24 chr1 62902959 62903000 -179761353 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 297 159 58 0 chr1 62903540 62903609 -179760744 + L1PA16 LINE L1 5271 5343 -823 1659 148 4 7 chr1 62903609 62903880 -179760473 + L1PA16 LINE L1 5891 6166 0 211 256 0 0 chr1 62904151 62904194 -179760159 + L2 LINE L2 3251 3293 -20 219 114 0 0 chr1 62904801 62904836 -179759517 + (CA)n Simple_repeat Simple_repeat 2 36 0 446 339 28 17 chr1 62904893 62905073 -179759280 + MIR SINE MIR 23 204 -58 3536 144 52 41 chr1 62905092 62905806 -179758547 - L1MB2 LINE L1 -1 6170 5449 188 350 0 17 chr1 62906039 62906099 -179758254 - L2 LINE L2 -1 3312 3254 332 299 79 0 chr1 62906217 62906344 -179758009 + MIR3 SINE MIR 67 203 -5 354 361 54 43 chr1 62906584 62906952 -179757401 + L2 LINE L2 2606 2977 -337 246 326 179 59 chr1 62907004 62907412 -179756941 - L2 LINE L2 -6 3266 2810 366 176 199 96 chr1 62907961 62908097 -179756256 + L2 LINE L2 3108 3257 -56 195 100 0 0 chr1 62908772 62908802 -179755551 + (TAA)n Simple_repeat Simple_repeat 2 31 0 675 237 153 16 chr1 62908818 62909008 -179755345 - MIR SINE MIR -26 236 21 431 309 140 11 chr1 62909205 62909383 -179754970 - MIR SINE MIR -57 205 5 22 0 0 0 chr1 62909653 62909675 -179754678 + AT_rich Low_complexity Low_complexity 1 22 0 43 0 0 0 chr1 62910600 62910643 -179753710 + AT_rich Low_complexity Low_complexity 1 43 0 389 252 238 0 chr1 62910704 62910855 -179753498 + MIR SINE MIR 56 242 -20 1849 313 132 6 chr1 62911101 62911965 -179752388 + L2 LINE L2 120 1092 -2222 186 330 23 11 chr1 62912127 62912215 -179752138 - L2 LINE L2 -500 2814 2726 231 394 74 28 chr1 62912221 62912437 -179751916 + L2 LINE L2 2987 3212 -60 285 298 153 23 chr1 62912559 62912690 -179751663 - L2 LINE L2 -202 3070 2923 980 235 82 16 chr1 62913200 62913515 -179750838 - MER46C DNA MER2_type -1 337 2 215 233 0 0 chr1 62914070 62914113 -179750240 - MER5B DNA MER1_type 0 178 136 1894 153 0 17 chr1 62914572 62914897 -179749456 + AluSx SINE Alu 1 320 0 372 299 124 39 chr1 62914901 62915231 -179749122 + L2 LINE L2 2709 3076 -196 271 247 126 75 chr1 62915604 62915743 -179748610 - MIR SINE MIR -76 186 35 2229 108 47 41 chr1 62915743 62916105 -179748248 + THE1B LTR MaLR 1 364 0 271 247 126 75 chr1 62916105 62916139 -179748214 - MIR SINE MIR -227 35 4 436 305 90 67 chr1 62916232 62916455 -179747898 - L2 LINE L2 -76 3196 2969 329 41 20 0 chr1 62916465 62916514 -179747839 - MADE1 DNA Mariner 0 80 31 284 299 21 31 chr1 62917804 62917901 -179746452 - MIR SINE MIR -78 184 89 369 303 187 5 chr1 62917918 62918116 -179746237 + MIR SINE MIR 28 261 -1 428 289 57 37 chr1 62918225 62918422 -179745931 - MIR SINE MIR -26 236 37 202 274 137 0 chr1 62919279 62919330 -179745023 - L2 LINE L2 -69 3203 3146 224 282 47 47 chr1 62919352 62919437 -179744916 - L2 LINE L2 -2 3311 3227 224 263 35 0 chr1 62919572 62919629 -179744724 + L2 LINE L2 3214 3272 0 233 332 46 84 chr1 62919629 62919884 -179744469 + L2 LINE L2 2924 3168 -104 358 352 14 7 chr1 62919884 62920029 -179744324 + MIR SINE MIR 3 148 -114 300 250 0 0 chr1 62920144 62920224 -179744129 + GA-rich Low_complexity Low_complexity 2 81 0 461 291 184 0 chr1 62921157 62921336 -179743017 - MIR SINE MIR -3 259 48 1136 173 70 30 chr1 62921404 62921718 -179742635 + LTR38B LTR ERV1 1 372 -225 304 191 16 0 chr1 62921717 62921780 -179742573 - MLT1B LTR MaLR -14 376 313 * 252 0 0 0 chr1 62921885 62921913 -179742440 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 384 299 17 8 chr1 62922295 62922412 -179741941 - MIR SINE MIR -98 164 47 216 330 88 22 chr1 62922488 62922579 -179741774 + MIR SINE MIR 12 108 -154 1716 137 25 142 chr1 62923009 62923332 -179741021 - MLT1B LTR MaLR -2 388 128 2666 109 0 11 chr1 62923332 62923700 -179740653 - THE1B LTR MaLR 0 364 1 1716 137 25 142 chr1 62923700 62923813 -179740540 - MLT1B LTR MaLR -262 128 3 675 277 30 0 chr1 62923877 62924079 -179740274 - MIR SINE MIR -43 219 12 196 268 18 0 chr1 62924202 62924258 -179740095 - L2 LINE L2 -257 3056 3000 242 283 81 0 chr1 62924397 62924496 -179739857 - L2 LINE L2 -518 2796 2690 237 261 29 0 chr1 62925074 62925143 -179739210 - MIR3 SINE MIR -10 198 128 255 245 64 43 chr1 62925764 62925858 -179738495 + MIR3 SINE MIR 112 207 -1 1614 291 67 11 chr1 62926216 62926739 -179737614 - MLT1H1 LTR MaLR -3 552 1 1597 269 124 23 chr1 62926785 62927782 -179736571 + L2 LINE L2 2221 3313 0 224 297 130 14 chr1 62928033 62928171 -179736182 + MIR SINE MIR 49 202 -60 450 53 0 0 chr1 62928585 62928642 -179735711 + (CA)n Simple_repeat Simple_repeat 2 58 0 199 351 27 9 chr1 62928855 62928966 -179735387 - MIR SINE MIR -67 141 46 2217 101 14 10 chr1 62930075 62930372 -179733981 + AluSx SINE Alu 1 298 -14 413 194 19 29 chr1 62930373 62930476 -179733877 - MIR SINE MIR -131 131 30 257 338 29 29 chr1 62930747 62930886 -179733467 + MER5A DNA MER1_type 17 155 -34 494 262 40 7 chr1 62930893 62931042 -179733311 + MER112 DNA MER1_type 8 161 -99 217 247 148 0 chr1 62931587 62931668 -179732685 + MIR SINE MIR 49 141 -67 456 250 39 0 chr1 62932291 62932419 -179731934 - MIR SINE MIR -108 154 22 299 324 96 0 chr1 62933172 62933308 -179731045 - MIR SINE MIR -13 249 101 234 250 47 0 chr1 62933822 62933886 -179730467 - L2 LINE L2 -6 3266 3200 640 162 41 107 chr1 62934276 62934582 -179729771 - MLT1A1 LTR MaLR 0 365 1 187 273 0 57 chr1 62935305 62935393 -179728960 - MIR SINE MIR -70 192 110 298 326 71 11 chr1 62935590 62935774 -179728579 - L2 LINE L2 -1 3312 3118 296 202 10 101 chr1 62935847 62935946 -179728407 - L2 LINE L2 0 3313 3224 * 314 266 18 0 chr1 62935930 62936039 -179728314 + L2 LINE L2 2276 2386 -928 280 371 73 11 chr1 62936403 62936675 -179727678 + L2 LINE L2 2686 2974 -340 420 335 43 5 chr1 62937132 62937317 -179727036 - MIR SINE MIR -62 200 9 210 37 0 0 chr1 62937482 62937509 -179726844 + (T)n Simple_repeat Simple_repeat 1 27 0 869 247 218 48 chr1 62938344 62938785 -179725568 - LTR33A LTR ERVL 0 523 8 239 332 53 21 chr1 62938920 62939110 -179725243 - L2 LINE L2 -224 3048 2853 405 211 86 55 chr1 62939635 62939763 -179724590 + MARNA DNA Mariner 436 567 -19 487 291 154 35 chr1 62940415 62940786 -179723567 + MLT1K LTR MaLR 172 586 -2 2689 33 0 0 chr1 62940840 62941140 -179723213 - AluY SINE Alu -11 300 1 187 259 19 0 chr1 62941224 62941278 -179723075 - MIR SINE MIR -111 151 97 730 266 141 53 chr1 62941282 62941658 -179722695 - MLT1J2 LTR MaLR -2 448 40 204 275 0 14 chr1 62941745 62941814 -179722539 + CT-rich Low_complexity Low_complexity 1 68 0 252 0 0 0 chr1 62942457 62942485 -179721868 + (A)n Simple_repeat Simple_repeat 1 28 0 275 130 0 0 chr1 62942808 62942854 -179721499 - L1MC4 LINE L1 -1339 6703 6658 207 0 0 0 chr1 62942860 62942883 -179721470 + (GA)n Simple_repeat Simple_repeat 2 24 0 459 0 0 0 chr1 62942884 62942935 -179721418 + (TG)n Simple_repeat Simple_repeat 2 52 0 659 147 0 46 chr1 62942936 62943045 -179721308 - FLAM_C SINE Alu -38 105 2 189 365 16 16 chr1 62943143 62943269 -179721084 + MIR SINE MIR 2 127 -135 1958 163 5 38 chr1 62943792 62943938 -179720415 + MLT1A1 LTR MaLR 10 159 -206 3603 49 5 2 chr1 62943938 62944384 -179719969 + L1PA5 LINE L1 5706 6152 -2 1958 163 5 38 chr1 62944384 62944605 -179719748 + MLT1A1 LTR MaLR 159 365 0 342 304 184 6 chr1 62944902 62945070 -179719283 + LTR33 LTR ERVL 3 200 -321 264 313 56 23 chr1 62945168 62945382 -179718971 + LTR33A LTR ERVL 303 523 0 340 301 122 16 chr1 62946901 62947122 -179717231 + MIR SINE MIR 18 262 0 252 0 0 0 chr1 62948042 62948070 -179716283 + (A)n Simple_repeat Simple_repeat 1 28 0 535 300 16 21 chr1 62948220 62948410 -179715943 - MIR SINE MIR -12 250 62 367 278 16 24 chr1 62948629 62948755 -179715598 + MIR SINE MIR 12 136 -126 528 254 112 8 chr1 62948851 62948985 -179715368 - MLT1G1 LTR MaLR -7 588 441 2184 199 126 62 chr1 62949050 62949920 -179714433 - LTR1B LTR ERV1 0 1020 1 710 246 114 32 chr1 62949920 62950171 -179714182 - MLT1G1 LTR MaLR -284 311 3 494 274 68 68 chr1 62950183 62950435 -179713918 - MLT1G1-int LTR MaLR -5 1366 1115 394 338 27 14 chr1 62950531 62950753 -179713600 + MIR SINE MIR 22 246 -16 2191 105 7 0 chr1 62951269 62951555 -179712798 + AluSc SINE Alu 1 288 -21 290 329 42 42 chr1 62951567 62951780 -179712573 + MIR SINE MIR 50 262 0 197 278 120 37 chr1 62951791 62951899 -179712454 + MIR SINE MIR 140 256 -6 324 248 23 25 chr1 62953680 62953797 -179710556 + MLT1F LTR MaLR 19 97 -445 254 190 13 101 chr1 62953814 62953893 -179710460 + MLT1H1 LTR MaLR 245 316 -279 372 231 35 0 chr1 62953935 62954035 -179710318 + MLT1H1 LTR MaLR 427 544 -11 361 271 140 0 chr1 62954172 62954279 -179710074 - L2 LINE L2 0 3272 3151 446 278 5 46 chr1 62954837 62955047 -179709306 - MIR3 SINE MIR -60 202 2 180 0 0 0 chr1 62955381 62955401 -179708952 + (TG)n Simple_repeat Simple_repeat 2 21 0 218 343 10 10 chr1 62955504 62955603 -179708750 - MIR SINE MIR -73 135 37 2271 128 17 8 chr1 62956694 62957046 -179707307 - THE1A LTR MaLR 0 355 1 11457 97 16 2 chr1 62957046 62958604 -179705749 - THE1A-int LTR MaLR 0 1580 1 2407 119 8 8 chr1 62958605 62958959 -179705394 - THE1A LTR MaLR -1 354 1 234 228 0 18 chr1 62959060 62959117 -179705236 + (TA)n Simple_repeat Simple_repeat 1 56 0 250 315 28 9 chr1 62959126 62959234 -179705119 - MIR SINE MIR -109 153 44 189 330 187 0 chr1 62959279 62959370 -179704983 - L2 LINE L2 -28 3244 3137 586 260 0 13 chr1 62959421 62959571 -179704782 - MER97c DNA MER1_type? -908 182 35 224 195 0 0 chr1 62960358 62960399 -179703954 + (CA)n Simple_repeat Simple_repeat 2 42 0 284 198 28 0 chr1 62960968 62961048 -179703305 - MIR SINE MIR -70 192 111 367 320 59 13 chr1 62961774 62961927 -179702426 + MIR SINE MIR 50 209 -53 1206 141 4 66 chr1 62962021 62962248 -179702105 - AluJb SINE Alu -11 301 89 222 194 0 45 chr1 62962790 62962857 -179701496 - L2 LINE L2 -529 2785 2722 1074 168 86 0 chr1 62963237 62963434 -179700919 - MER20 DNA MER1_type 0 219 6 364 236 121 73 chr1 62964047 62964212 -179700141 + MIR SINE MIR 79 251 -11 233 146 21 0 chr1 62964217 62964265 -179700088 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 442 351 71 8 chr1 62965247 62965486 -179698867 + MIR SINE MIR 3 256 -6 226 269 125 0 chr1 62965489 62965593 -179698760 + MIR SINE MIR 81 197 -65 469 257 158 38 chr1 62966365 62966548 -179697805 + MIR SINE MIR 49 253 -9 1601 260 95 13 chr1 62967155 62967432 -179696921 - L1MEc LINE L1 -3371 2844 2591 243 0 0 0 chr1 62967432 62967459 -179696894 + (CA)n Simple_repeat Simple_repeat 2 28 0 1601 260 95 13 chr1 62967459 62967884 -179696469 - L1MEc LINE L1 -3624 2591 2125 927 283 66 7 chr1 62967897 62968339 -179696014 - L1MEc LINE L1 -5047 1349 882 237 295 77 0 chr1 62968339 62968417 -179695936 - MIR3 SINE MIR -21 187 104 549 282 53 19 chr1 62968970 62969176 -179695177 + MIR SINE MIR 48 260 -2 556 249 43 32 chr1 62969216 62969401 -179694952 + MIR SINE MIR 10 196 -66 398 341 30 12 chr1 62969421 62969585 -179694768 - L2 LINE L2 -36 3236 3070 378 300 129 54 chr1 62969765 62969913 -179694440 - L2 LINE L2 0 3313 3178 2096 128 0 3 chr1 62969913 62970203 -179694150 + AluSx SINE Alu 5 293 -19 378 300 129 54 chr1 62970203 62970696 -179693657 - L2 LINE L2 -135 3178 2640 384 297 42 39 chr1 62970721 62970980 -179693373 - L2 LINE L2 -927 2387 2128 229 318 50 25 chr1 63020983 63021184 -179643169 + LTR33A LTR ERVL 318 523 0 449 295 122 16 chr1 63022703 63022924 -179641429 + MIR SINE MIR 18 262 0 252 0 0 0 chr1 63023844 63023872 -179640481 + (A)n Simple_repeat Simple_repeat 1 28 0 607 300 16 21 chr1 63024022 63024212 -179640141 - MIR SINE MIR -12 250 62 413 278 16 24 chr1 63024431 63024557 -179639796 + MIR SINE MIR 12 136 -126 532 236 77 46 chr1 63024653 63024832 -179639521 - MLT1G1 LTR MaLR -7 588 301 2152 199 126 62 chr1 63024852 63025722 -179638631 - LTR1B LTR ERV1 0 1020 1 711 246 114 32 chr1 63025722 63025973 -179638380 - MLT1G1 LTR MaLR -284 311 3 490 274 68 68 chr1 63025985 63026237 -179638116 - MLT1G1-int LTR MaLR -5 1366 1115 453 338 27 14 chr1 63026333 63026555 -179637798 + MIR SINE MIR 22 246 -16 2172 105 7 0 chr1 63027071 63027357 -179636996 + AluSc SINE Alu 1 288 -21 341 312 41 36 chr1 63027359 63027582 -179636771 + MIR SINE MIR 42 262 0 225 278 120 37 chr1 63027593 63027701 -179636652 + MIR SINE MIR 140 256 -6 320 267 68 19 chr1 63029472 63029690 -179634663 + MLT1H1 LTR MaLR 1 305 -244 373 231 35 0 chr1 63029737 63029837 -179634516 + MLT1H1 LTR MaLR 427 544 -11 417 252 140 0 chr1 63029974 63030081 -179634272 - L2 LINE L2 0 3272 3151 504 278 5 46 chr1 63030639 63030849 -179633504 - MIR3 SINE MIR -60 202 2 180 0 0 0 chr1 63031183 63031203 -179633150 + (TG)n Simple_repeat Simple_repeat 2 21 0 238 346 98 26 chr1 63031274 63031427 -179632926 - MIR3 SINE MIR -27 181 18 2398 128 17 8 chr1 63032496 63032848 -179631505 - THE1A LTR MaLR 0 355 1 12045 98 16 2 chr1 63032848 63034406 -179629947 - THE1A-int LTR MaLR 0 1580 1 2538 119 8 8 chr1 63034407 63034761 -179629592 - THE1A LTR MaLR -1 354 1 234 228 0 18 chr1 63034862 63034919 -179629434 + (TA)n Simple_repeat Simple_repeat 1 56 0 289 346 23 15 chr1 63034928 63035061 -179629292 - MIR SINE MIR -109 153 20 209 321 187 15 chr1 63035081 63035215 -179629138 - L2 LINE L2 -28 3244 3088 582 260 0 13 chr1 63035223 63035373 -179628980 - MER97c DNA MER1_type? -908 182 35 224 195 0 0 chr1 63036160 63036201 -179628152 + (CA)n Simple_repeat Simple_repeat 2 42 0 309 238 38 0 chr1 63036770 63036850 -179627503 - MIR SINE MIR -70 192 110 411 335 53 12 chr1 63037576 63037746 -179626607 + MIR SINE MIR 50 226 -36 1187 142 4 66 chr1 63037823 63038049 -179626304 - AluJb SINE Alu -12 300 89 1130 164 90 0 chr1 63039038 63039239 -179625114 - MER20 DNA MER1_type 0 219 1 408 236 121 73 chr1 63039848 63040013 -179624340 + MIR SINE MIR 79 251 -11 233 146 21 0 chr1 63040018 63040066 -179624287 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 507 351 71 8 chr1 63041048 63041287 -179623066 + MIR SINE MIR 3 256 -6 244 279 125 0 chr1 63041290 63041394 -179622959 + MIR SINE MIR 81 197 -65 525 257 158 38 chr1 63042167 63042350 -179622003 + MIR SINE MIR 49 253 -9 1649 260 95 13 chr1 63042957 63043234 -179621119 - L1MEc LINE L1 -3371 2844 2591 243 0 0 0 chr1 63043234 63043261 -179621092 + (CA)n Simple_repeat Simple_repeat 2 28 0 1649 260 95 13 chr1 63043261 63043686 -179620667 - L1MEc LINE L1 -3624 2591 2125 968 283 66 7 chr1 63043699 63044141 -179620212 - L1MEc LINE L1 -5047 1349 882 260 295 77 0 chr1 63044141 63044219 -179620134 - MIR3 SINE MIR -21 187 104 611 300 48 22 chr1 63044751 63044978 -179619375 + MIR SINE MIR 28 260 -2 613 249 43 32 chr1 63045018 63045203 -179619150 + MIR SINE MIR 10 196 -66 451 341 30 12 chr1 63045223 63045387 -179618966 - L2 LINE L2 -36 3236 3070 182 270 135 34 chr1 63045414 63045503 -179618850 - L2 LINE L2 -279 2993 2896 461 304 131 54 chr1 63045567 63045714 -179618639 - L2 LINE L2 0 3313 3179 2075 128 0 3 chr1 63045714 63046004 -179618349 + AluSx SINE Alu 5 293 -19 461 304 131 54 chr1 63046004 63046497 -179617856 - L2 LINE L2 -134 3179 2640 485 288 107 36 chr1 63046522 63046887 -179617466 - L2 LINE L2 -927 2387 1997 892 129 0 36 chr1 63046896 63047036 -179617317 - MSTB2 LTR MaLR -2 430 296 493 164 58 67 chr1 63047070 63047174 -179617179 - L2 LINE L2 -20 3293 3191 1292 171 102 7 chr1 63047233 63047508 -179616845 - MSTB2 LTR MaLR -120 337 37 233 250 105 13 chr1 63047574 63047650 -179616703 - L2 LINE L2 -1357 1957 1875 200 350 94 26 chr1 63048073 63048190 -179616163 - MIR SINE MIR -24 238 114 558 170 126 15 chr1 63048324 63048459 -179615894 + MER103 DNA DNA 17 166 0 286 320 51 10 chr1 63048553 63048672 -179615681 - MIR SINE MIR -63 145 22 315 308 75 0 chr1 63048786 63048893 -179615460 + L1ME4a LINE L1 5548 5662 -459 268 222 25 12 chr1 63048978 63049059 -179615294 + L1ME4a LINE L1 5855 5936 -185 499 178 0 17 chr1 63049754 63049872 -179614481 + CT-rich Low_complexity Low_complexity 4 119 0 474 374 30 49 chr1 63049875 63050180 -179614173 - L2 LINE L2 -5 3267 2969 362 350 80 33 chr1 63050170 63050684 -179613669 - L2 LINE L2 -2170 1144 607 * 1530 257 70 25 chr1 63050719 63051158 -179613195 + Charlie1a DNA MER1_type 7 465 -990 2204 155 14 6 chr1 63051158 63051507 -179612846 - MLT1A1 LTR MaLR 0 365 14 3142 187 105 5 chr1 63051524 63052393 -179611960 + Charlie1a DNA MER1_type 465 1451 -4 419 310 61 51 chr1 63052817 63053014 -179611339 + MIR SINE MIR 7 205 -57 490 309 61 6 chr1 63053076 63053241 -179611112 - MIR SINE MIR -81 181 8 294 325 87 0 chr1 63053657 63053783 -179610570 - L2 LINE L2 -966 2348 2212 1890 151 0 30 chr1 63054257 63054561 -179609792 + AluJo SINE Alu 1 295 -17 280 200 0 0 chr1 63054565 63054625 -179609728 - MER97b DNA MER1_type? -925 128 69 538 300 26 6 chr1 63054727 63054929 -179609424 + MIR SINE MIR 45 249 -13 5212 95 18 6 chr1 63054959 63055678 -179608675 - L1PB2 LINE L1 -2 6149 5422 193 242 0 0 chr1 63055856 63055889 -179608464 - MIR SINE MIR -164 98 66 1431 232 88 38 chr1 63056038 63056198 -179608155 - MLT1D LTR MaLR 0 505 355 530 103 26 13 chr1 63056198 63056276 -179608077 - MADE1 DNA Mariner -1 79 1 1431 232 88 38 chr1 63056276 63056590 -179607763 - MLT1D LTR MaLR -150 355 7 203 333 18 20 chr1 63057058 63057240 -179607113 - MIR SINE MIR -3 259 32 372 314 115 0 chr1 63057373 63057564 -179606789 - MIR SINE MIR -2 260 48 220 257 150 26 chr1 63057559 63057672 -179606681 + MIR SINE MIR 128 254 -8 * 225 344 86 32 chr1 63058491 63058677 -179605676 - L2 LINE L2 -212 3060 2865 195 129 0 0 chr1 63058820 63058851 -179605502 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 381 377 41 9 chr1 63059200 63059420 -179604933 - MIR SINE MIR -15 247 21 269 259 88 75 chr1 63059462 63059609 -179604744 - MIR3 SINE MIR -39 169 21 187 244 0 0 chr1 63059751 63059792 -179604561 + L2 LINE L2 3179 3219 -94 279 219 0 49 chr1 63059950 63060032 -179604321 - MLT1K LTR MaLR -112 476 399 427 308 52 52 chr1 63060068 63060279 -179604074 - MLT1K LTR MaLR -272 316 106 203 362 0 94 chr1 63060342 63060480 -179603873 - L2 LINE L2 -11 3261 3137 321 335 78 16 chr1 63060618 63060809 -179603544 - L3 LINE CR1 -21 1556 1354 397 274 8 57 chr1 63061085 63061209 -179603144 - MER5A DNA MER1_type -35 154 37 452 349 73 53 chr1 63061267 63061568 -179602785 - L2 LINE L2 -3 3269 2963 222 308 164 20 chr1 63061620 63061968 -179602385 - L2 LINE L2 -456 2858 2461 1742 176 40 72 chr1 63062818 63063221 -179601132 + MLT1B LTR MaLR 1 390 0 216 258 166 40 chr1 63063470 63063621 -179600732 + L2 LINE L2 3095 3264 -8 2426 178 5 0 chr1 63063877 63064264 -179600089 - MLT1B LTR MaLR -1 389 1 583 198 33 13 chr1 63064949 63065129 -179599224 + MER58A DNA MER1_type 6 223 -1 441 277 28 13 chr1 63065131 63065300 -179599053 - L1ME LINE L1 -323 5798 5622 221 328 0 0 chr1 63065554 63065612 -179598741 + MIR SINE MIR 84 141 -121 207 200 0 0 chr1 63065695 63065730 -179598623 + polypurine Low_complexity Low_complexity 3 37 0 251 346 0 10 chr1 63065905 63066006 -179598347 - L2 LINE L2 -181 3091 2992 582 249 96 16 chr1 63066291 63066524 -179597829 - MIR SINE MIR -13 249 3 779 250 66 5 chr1 63066661 63066873 -179597480 - MIR SINE MIR -1 261 37 1156 76 0 14 chr1 63067206 63067351 -179597002 - L1PA11 LINE L1 -3 6171 6029 258 283 42 42 chr1 63067823 63067943 -179596410 + MIR SINE MIR 30 149 -59 543 284 77 14 chr1 63068222 63068444 -179595909 - MIR SINE MIR -4 258 23 349 240 115 0 chr1 63068679 63068775 -179595578 - MLT1I LTR MaLR 0 409 303 263 210 81 0 chr1 63068800 63068862 -179595491 - MLT1J1 LTR MaLR -137 309 243 216 0 0 0 chr1 63069154 63069178 -179595175 + (TG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr1 63069997 63070020 -179594333 + AT_rich Low_complexity Low_complexity 1 23 0 397 296 54 92 chr1 63070059 63070319 -179594034 - L2 LINE L2 -210 3062 2813 322 333 81 0 chr1 63070739 63070850 -179593503 + L2 LINE L2 3147 3266 -6 249 243 74 95 chr1 63070978 63071126 -179593227 - L2 LINE L2 -638 2676 2532 549 199 0 0 chr1 63071167 63071338 -179593015 + (TA)n Simple_repeat Simple_repeat 1 171 0 314 272 32 48 chr1 63071341 63071466 -179592887 + L1MC4 LINE L1 6609 6731 -1311 2201 101 34 0 chr1 63071481 63071778 -179592575 - AluSc SINE Alu 0 309 3 318 269 219 19 chr1 63072165 63072325 -179592028 - MIR SINE MIR -36 226 35 275 326 166 23 chr1 63072434 63072735 -179591618 + L2 LINE L2 2409 2752 -562 1048 151 38 16 chr1 63072792 63072977 -179591376 + MER5A DNA MER1_type 1 189 0 2989 79 11 0 chr1 63073147 63073571 -179590782 - L1PA7 LINE L1 -513 5641 5214 4088 70 10 0 chr1 63073571 63074069 -179590284 + L1PA7 LINE L1 5648 6152 -2 232 296 61 31 chr1 63074263 63074361 -179589992 - L2 LINE L2 -4 3268 3168 418 305 51 30 chr1 63074369 63074605 -179589748 - MER112 DNA MER1_type -6 254 14 238 312 134 32 chr1 63074680 63074837 -179589516 - MIR SINE MIR 0 262 90 330 138 231 0 chr1 63075322 63075387 -179588966 - MADE1 DNA Mariner 0 80 1 352 287 16 0 chr1 63075390 63075512 -179588841 + CT-rich Low_complexity Low_complexity 2 125 0 233 341 0 16 chr1 63076105 63076228 -179588125 + L2 LINE L2 2933 3053 -219 239 352 42 0 chr1 63076313 63076384 -179587969 - L2 LINE L2 -77 3195 3122 362 254 88 0 chr1 63076424 63076538 -179587815 + L2 LINE L2 2500 2623 -691 231 217 0 0 chr1 63076563 63076609 -179587744 + (TTG)n Simple_repeat Simple_repeat 3 48 0 343 332 209 6 chr1 63076613 63076953 -179587400 + L2 LINE L2 2901 3309 -4 641 307 104 23 chr1 63077018 63077595 -179586758 - L2 LINE L2 -168 3104 2481 190 375 50 8 chr1 63077835 63077955 -179586398 + L2 LINE L2 3179 3303 -10 256 308 150 8 chr1 63078224 63078344 -179586009 - MIR SINE MIR -17 245 109 220 324 29 29 chr1 63078751 63078856 -179585497 + L3 LINE CR1 1425 1529 -48 261 317 40 0 chr1 63079077 63079178 -179585175 + MIR SINE MIR 107 211 -51 371 311 20 60 chr1 63079298 63079449 -179584904 + MIR SINE MIR 10 154 -108 470 242 132 47 chr1 63079548 63079738 -179584615 + MIR SINE MIR 51 256 -6 736 276 32 5 chr1 63079753 63079974 -179584379 + MIR SINE MIR 36 262 0 217 274 0 0 chr1 63080051 63080102 -179584251 + MIR SINE MIR 123 173 -89 379 282 53 25 chr1 63080939 63081114 -179583239 - MIR SINE MIR -62 146 2 611 280 5 35 chr1 63081179 63081379 -179582974 - MIR SINE MIR -6 256 63 763 240 74 9 chr1 63081443 63081587 -179582766 - MER112 DNA MER1_type -11 249 83 1714 170 3 36 chr1 63081587 63081893 -179582460 + AluJb SINE Alu 1 296 -16 763 240 74 9 chr1 63081893 63081977 -179582376 - MER112 DNA MER1_type -177 83 6 1723 189 35 123 chr1 63082076 63082646 -179581707 - MLT2B1 LTR ERVL 0 520 1 489 330 32 9 chr1 63082762 63082983 -179581370 - MIR SINE MIR -3 259 34 330 291 45 15 chr1 63083355 63083489 -179580864 + MER117 DNA MER1_type 55 192 -5 196 274 255 0 chr1 63083742 63083844 -179580509 - L2 LINE L2 0 3272 3145 300 273 43 86 chr1 63084351 63084560 -179579793 + L2 LINE L2 2877 3076 -196 23 0 0 0 chr1 63084902 63084925 -179579428 + AT_rich Low_complexity Low_complexity 1 23 0 335 277 68 78 chr1 63085257 63085463 -179578890 + MIR SINE MIR 2 205 -57 772 240 49 37 chr1 63085674 63085920 -179578433 - MIR SINE MIR 0 262 14 273 273 309 16 chr1 63086265 63086459 -179577894 - MIR SINE MIR 0 262 12 932 344 102 32 chr1 63087968 63088425 -179575928 - L3 LINE CR1 -2 1575 1152 1754 189 52 3 chr1 63088425 63088812 -179575541 - L1MB1 LINE L1 -1 6167 5762 932 344 102 32 chr1 63088812 63089077 -179575276 - L3 LINE CR1 -425 1152 907 2684 99 11 3 chr1 63089077 63089449 -179574904 + THE1C LTR MaLR 1 375 0 932 344 102 32 chr1 63089449 63089642 -179574711 - L3 LINE CR1 -670 907 594 317 271 57 43 chr1 63089692 63089832 -179574521 + MER5B DNA MER1_type 30 171 -7 369 355 32 0 chr1 63090536 63090691 -179573662 + MIR3 SINE MIR 45 204 -4 401 323 82 0 chr1 63091165 63091323 -179573030 - MIR3 SINE MIR -4 204 34 268 274 44 67 chr1 63091386 63091521 -179572832 - L2 LINE L2 -5 3267 3136 229 232 147 42 chr1 63091792 63091887 -179572466 + MIR SINE MIR 38 142 -120 190 224 0 145 chr1 63093511 63093587 -179570766 + L2 LINE L2 3238 3302 -11 264 59 0 0 chr1 63093590 63093624 -179570729 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 897 226 14 47 chr1 63094374 63094586 -179569767 - MER58C DNA MER1_type -1 214 10 245 320 42 16 chr1 63094635 63094774 -179569579 - MIR3 SINE MIR -59 149 15 1079 177 4 60 chr1 63094798 63095030 -179569323 + MER20 DNA MER1_type 1 219 0 313 238 12 0 chr1 63095644 63095728 -179568625 + MIR SINE MIR 64 148 -114 189 106 43 21 chr1 63096155 63096202 -179568151 + (TTATG)n Simple_repeat Simple_repeat 5 52 0 195 315 124 0 chr1 63096241 63096330 -179568023 + MIR3 SINE MIR 101 200 -8 378 222 22 0 chr1 63096815 63096905 -179567448 + MIR3 SINE MIR 63 154 -54 241 284 138 9 chr1 63097093 63097202 -179567151 - MIR SINE MIR -69 193 71 478 269 106 23 chr1 63097206 63097427 -179566926 - MIR SINE MIR -11 251 8 1101 172 38 19 chr1 63097429 63097638 -179566715 + MER20 DNA MER1_type 7 219 0 238 379 34 0 chr1 63098085 63098262 -179566091 + MIR SINE MIR 73 255 -7 1955 219 47 14 chr1 63098817 63099261 -179565092 - MLT1C LTR MaLR -3 464 6 258 337 51 10 chr1 63099422 63099520 -179564833 + MIR SINE MIR 36 137 -71 398 294 219 16 chr1 63099913 63100338 -179564015 + L3 LINE CR1 1064 1574 -3 2036 138 0 41 chr1 63100590 63100908 -179563445 - AluSx SINE Alu -7 305 1 246 203 29 0 chr1 63100952 63101021 -179563332 + MIR SINE MIR 133 203 -59 215 280 10 90 chr1 63101380 63101480 -179562873 - MER91 DNA MER1_type -58 138 47 639 260 45 20 chr1 63101522 63101722 -179562631 - MIR SINE MIR -17 245 41 209 111 28 0 chr1 63102453 63102489 -179561864 - MIR3 SINE MIR -22 186 150 1443 138 0 17 chr1 63103208 63103439 -179560914 + L1PA12 LINE L1 1670 1896 -5685 2246 139 22 6 chr1 63104300 63104659 -179559694 - MLT1A1 LTR MaLR 0 365 1 253 352 0 28 chr1 63104726 63104834 -179559519 + L2 LINE L2 3168 3272 0 182 340 0 0 chr1 63105034 63105087 -179559266 + L2 LINE L2 3121 3173 -99 729 169 11 82 chr1 63105862 63105988 -179558365 + MER5B DNA MER1_type 1 112 -66 2117 118 36 13 chr1 63105988 63106293 -179558060 - AluSx SINE Alu 0 312 1 729 169 11 82 chr1 63106293 63106349 -179558004 + MER5B DNA MER1_type 112 170 -8 188 306 71 10 chr1 63107412 63107510 -179556843 - L2 LINE L2 -38 3275 3172 909 261 126 39 chr1 63108042 63108403 -179555950 + L2 LINE L2 2797 3216 -97 1942 160 22 16 chr1 63108403 63108766 -179555587 + MLT1A1 LTR MaLR 1 365 0 909 261 126 39 chr1 63108766 63108873 -179555480 + L2 LINE L2 3216 3312 -1 2192 107 7 0 chr1 63108881 63109171 -179555182 + AluSx SINE Alu 2 293 -19 268 318 64 86 chr1 63109185 63109559 -179554794 + L2 LINE L2 2896 3261 -11 353 200 24 12 chr1 63110549 63110634 -179553719 - MIR SINE MIR -62 146 61 421 259 97 27 chr1 63110827 63111012 -179553341 + MIR SINE MIR 64 261 -1 683 278 79 8 chr1 63111242 63111483 -179552870 - MIR SINE MIR -4 258 1 318 247 133 7 chr1 63112234 63112384 -179551969 - L2 LINE L2 0 3313 3145 232 174 0 0 chr1 63113067 63113113 -179551240 + (TTA)n Simple_repeat Simple_repeat 2 47 0 408 40 0 0 chr1 63114825 63114875 -179549478 + (CA)n Simple_repeat Simple_repeat 1 50 0 459 287 13 19 chr1 63115634 63115791 -179548562 + L2 LINE L2 2909 3064 -208 240 111 0 0 chr1 63116022 63116058 -179548295 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 382 283 71 0 chr1 63116285 63116398 -179547955 + MIR3 SINE MIR 62 182 -26 747 274 5 19 chr1 63116525 63116737 -179547616 + MIR SINE MIR 13 221 -41 660 298 43 0 chr1 63116746 63116954 -179547399 - MIR SINE MIR 0 262 46 216 283 0 19 chr1 63116962 63117015 -179547338 + L2 LINE L2 3210 3261 -11 272 337 93 43 chr1 63117174 63117474 -179546879 - L2 LINE L2 0 3272 2958 326 349 23 0 chr1 63118144 63118273 -179546080 - L3 LINE CR1 -96 1481 1350 245 333 150 0 chr1 63119614 63119734 -179544619 - L2 LINE L2 -10 3262 3125 200 339 0 0 chr1 63121005 63121067 -179543286 - MIR SINE MIR -152 110 49 262 276 29 9 chr1 63121243 63121348 -179543005 + T-rich Low_complexity Low_complexity 1 107 0 597 271 20 30 chr1 63121508 63121707 -179542646 - MIR SINE MIR 0 262 66 775 299 46 55 chr1 63121720 63122352 -179542001 - L1ME4a LINE L1 -118 6003 5378 23 0 0 0 chr1 63122441 63122464 -179541889 + AT_rich Low_complexity Low_complexity 1 23 0 2265 111 7 0 chr1 63122514 63122820 -179541533 - AluSx SINE Alu -1 311 4 1045 238 65 44 chr1 63122998 63123384 -179540969 + MLT1I LTR MaLR 8 401 -8 877 180 5 16 chr1 63123543 63123732 -179540621 - MER53 DNA DNA 0 189 3 320 290 47 0 chr1 63123799 63123906 -179540447 - HAL1b LINE L1 -850 498 387 194 309 24 95 chr1 63125752 63125920 -179538433 + MIR SINE MIR 106 261 -1 44 46 0 0 chr1 63126135 63126200 -179538153 + AT_rich Low_complexity Low_complexity 1 65 0 1723 180 10 17 chr1 63126216 63126516 -179537837 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr1 63126616 63126645 -179537708 + AT_rich Low_complexity Low_complexity 1 29 0 918 114 38 6 chr1 63127216 63127536 -179536817 + (TAGA)n Simple_repeat Simple_repeat 1 330 0 314 343 15 15 chr1 63127584 63127718 -179536635 - MIR SINE MIR -109 153 20 401 228 128 7 chr1 63127963 63128112 -179536241 - MIR SINE MIR -2 260 94 2185 111 3 10 chr1 63128350 63128647 -179535706 + AluSx SINE Alu 1 295 -17 1492 169 79 17 chr1 63128719 63128839 -179535514 + AluJb SINE Alu 2 113 -199 207 0 0 0 chr1 63128839 63128862 -179535491 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1492 169 79 17 chr1 63128862 63129031 -179535322 + AluJb SINE Alu 113 309 -3 1247 264 99 10 chr1 63129064 63129466 -179534887 + L1ME3A LINE L1 5527 5964 -206 470 229 21 0 chr1 63130990 63131086 -179533267 + MER5A DNA MER1_type 12 109 -80 784 335 24 28 chr1 63131187 63131692 -179532661 - L2 LINE L2 -776 2538 2036 943 230 42 5 chr1 63132423 63132636 -179531717 + MER58A DNA MER1_type 1 221 -3 278 286 70 113 chr1 63132992 63133390 -179530963 + L2 LINE L2 2597 2977 -337 2216 113 0 7 chr1 63133580 63133907 -179530446 + AluY SINE Alu 1 311 0 1901 198 15 23 chr1 63135051 63135450 -179528903 + MSTD LTR MaLR 1 396 0 277 360 32 8 chr1 63135745 63135870 -179528483 - L2 LINE L2 -12 3260 3133 598 219 84 11 chr1 63136599 63136777 -179527576 + MIR SINE MIR 65 255 -7 995 171 7 0 chr1 63137022 63137174 -179527179 - AluJb SINE Alu -25 287 135 461 287 7 7 chr1 63137187 63137330 -179527023 - MIR3 SINE MIR -17 191 49 389 313 152 5 chr1 63137518 63137729 -179526624 - MIR SINE MIR 0 262 21 217 200 120 27 chr1 63137810 63137885 -179526468 - MIR SINE MIR -72 190 109 729 242 16 77 chr1 63138579 63138827 -179525526 + MIR SINE MIR 7 239 -23 309 293 93 0 chr1 63139090 63139240 -179525113 - L3 LINE CR1 -145 1432 1269 488 296 50 45 chr1 63139297 63139517 -179524836 - MIR SINE MIR -22 240 20 279 306 58 25 chr1 63139557 63139678 -179524675 - MIR SINE MIR -65 197 73 446 244 49 0 chr1 63139719 63139842 -179524511 + MIR SINE MIR 43 171 -91 469 188 158 0 chr1 63141075 63141208 -179523145 + MIR SINE MIR 99 252 -10 222 217 0 0 chr1 63141924 63141993 -179522360 + CT-rich Low_complexity Low_complexity 3 71 0 293 316 116 7 chr1 63142222 63142377 -179521976 - MIR SINE MIR -71 191 20 245 301 154 0 chr1 63142430 63142553 -179521800 + MIR SINE MIR 65 206 -56 220 218 51 13 chr1 63143025 63143103 -179521250 + L2 LINE L2 3162 3242 -71 394 259 151 18 chr1 63143288 63143454 -179520899 + MIR SINE MIR 2 189 -73 274 296 35 83 chr1 63143790 63144177 -179520176 - L2 LINE L2 -203 3069 2697 202 348 0 0 chr1 63145153 63145222 -179519131 - L2 LINE L2 -11 3302 3234 248 318 38 23 chr1 63145358 63145490 -179518863 - L2 LINE L2 -213 3059 2926 272 116 0 0 chr1 63145832 63145875 -179518478 - MIR SINE MIR -5 257 215 195 172 11 32 chr1 63146251 63146344 -179518009 + (TTAA)n Simple_repeat Simple_repeat 4 94 0 264 319 54 24 chr1 63146736 63146902 -179517451 - L2 LINE L2 -909 2405 2235 181 273 0 18 chr1 63147053 63147108 -179517245 + MIR SINE MIR 93 146 -62 206 320 41 10 chr1 63147351 63147448 -179516905 - MIR SINE MIR -72 136 37 248 244 67 0 chr1 63148529 63148619 -179515734 - L1ME4a LINE L1 -59 6062 5967 409 269 74 43 chr1 63148737 63149032 -179515321 - L1MC4a LINE L1 -187 5975 5661 267 318 113 13 chr1 63149572 63149723 -179514630 + MIR SINE MIR 21 186 -76 281 309 29 81 chr1 63150167 63150474 -179513879 + L2 LINE L2 2687 2977 -337 189 0 0 0 chr1 63151309 63151330 -179513023 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 234 0 0 0 chr1 63151329 63151355 -179512998 + (TG)n Simple_repeat Simple_repeat 2 27 0 385 146 0 0 chr1 63152211 63152266 -179512087 + MADE1 DNA Mariner 2 56 -24 286 223 324 0 chr1 63152369 63152508 -179511845 + MIR SINE MIR 79 262 0 248 337 0 12 chr1 63152515 63152598 -179511755 + MIR SINE MIR 21 102 -160 698 258 6 0 chr1 63152611 63152778 -179511575 + MIR SINE MIR 28 195 -67 241 78 0 39 chr1 63152779 63152830 -179511523 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2113 48 0 8 chr1 63153070 63153353 -179511000 + AluY SINE Alu 35 315 0 337 224 9 56 chr1 63153682 63153789 -179510564 + MIR SINE MIR 89 190 -72 245 342 117 0 chr1 63154251 63154371 -179509982 + L2 LINE L2 2917 3050 -222 284 205 108 0 chr1 63154966 63155049 -179509304 - MLT1H-int LTR MaLR -1642 93 2 745 261 92 77 chr1 63155050 63155571 -179508782 - MLT1H LTR MaLR 0 549 21 511 273 55 63 chr1 63155586 63155857 -179508496 + MLT1I LTR MaLR 141 409 0 651 332 72 42 chr1 63156193 63156871 -179507482 - L2 LINE L2 -9 3263 2563 1239 286 48 19 chr1 63157642 63158019 -179506334 + MLT1J1 LTR MaLR 59 446 0 1913 146 134 0 chr1 63158411 63158732 -179505621 + THE1B LTR MaLR 1 364 0 2003 152 0 10 chr1 63159472 63159774 -179504579 - AluSx SINE Alu -13 299 1 467 239 67 22 chr1 63159809 63159943 -179504410 - L2 LINE L2 0 3313 3174 612 228 117 125 chr1 63160151 63160697 -179503656 - MLT1G LTR MaLR -1 589 1 1442 202 89 0 chr1 63160951 63161233 -179503120 + AluJo SINE Alu 1 307 -5 251 283 30 20 chr1 63161564 63161663 -179502690 + MIR SINE MIR 17 116 -146 2737 102 3 0 chr1 63162019 63162382 -179501971 + THE1B LTR MaLR 1 364 0 404 293 137 14 chr1 63162683 63162895 -179501458 + MIR SINE MIR 24 261 -1 2041 94 42 3 chr1 63162932 63163241 -179501112 - L1PB2 LINE L1 -4 6147 5827 544 281 97 0 chr1 63164163 63164348 -179500005 + MIR SINE MIR 48 250 -12 195 123 351 18 chr1 63165466 63165523 -179498830 - MIR SINE MIR -108 154 79 398 339 84 9 chr1 63165524 63165751 -179498602 + MIR SINE MIR 18 261 -1 227 253 39 26 chr1 63166242 63166319 -179498034 + MIR SINE MIR 73 151 -57 231 250 0 0 chr1 63166673 63166717 -179497636 + C-rich Low_complexity Low_complexity 2 45 0 2540 128 32 8 chr1 63166917 63167317 -179497036 - MSTB LTR MaLR -2 424 15 269 282 67 67 chr1 63167636 63167831 -179496522 - MIR3 SINE MIR -3 205 11 266 333 57 9 chr1 63167858 63167963 -179496390 - L2 LINE L2 -29 3243 3134 241 292 53 35 chr1 63168885 63168998 -179495355 + MIR SINE MIR 77 191 -71 1026 122 0 0 chr1 63169059 63169239 -179495114 + (TA)n Simple_repeat Simple_repeat 1 180 0 377 279 174 0 chr1 63170717 63170889 -179493464 - MIR SINE MIR -5 257 56 22 0 0 0 chr1 63171025 63171047 -179493306 + AT_rich Low_complexity Low_complexity 1 22 0 2060 108 57 7 chr1 63171362 63171659 -179492694 - AluSq SINE Alu -1 312 1 657 308 50 4 chr1 63172375 63172615 -179491738 + MIR SINE MIR 12 262 0 186 43 0 0 chr1 63173297 63173320 -179491033 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2035 138 7 0 chr1 63173487 63173778 -179490575 - AluSx SINE Alu -19 293 1 314 213 148 9 chr1 63174211 63174319 -179490034 - L1MC/D LINE L1 -2284 5524 5402 290 300 0 0 chr1 63174519 63174589 -179489764 + L2 LINE L2 3201 3270 -2 307 315 185 23 chr1 63174855 63175331 -179489022 - L1MC/D LINE L1 -786 5360 4808 553 290 94 43 chr1 63175696 63176206 -179488147 - L1MC/D LINE L1 -1715 4431 3896 1825 31 9 36 chr1 63176520 63176745 -179487608 - AluY SINE Alu -3 308 90 256 256 81 81 chr1 63176827 63176987 -179487366 + L2 LINE L2 3149 3308 -5 216 209 0 0 chr1 63177213 63177256 -179487097 - MIR SINE MIR 0 262 220 551 265 163 7 chr1 63179092 63179303 -179485050 + MIR SINE MIR 37 262 0 1743 189 0 10 chr1 63179330 63179636 -179484717 + AluJo SINE Alu 9 311 -1 321 325 49 12 chr1 63179637 63179800 -179484553 - L3b LINE CR1 -147 1436 1268 210 71 0 0 chr1 63179932 63179960 -179484393 + (CA)n Simple_repeat Simple_repeat 1 28 0 365 294 81 0 chr1 63184170 63184306 -179480047 + MIR SINE MIR 79 225 -37 578 252 81 19 chr1 63184929 63185139 -179479214 - MIR SINE MIR -20 242 20 190 254 91 0 chr1 63185290 63185345 -179479008 - MIR SINE MIR -62 146 87 274 318 9 27 chr1 63185429 63185539 -179478814 - MIR SINE MIR -60 148 41 2468 76 0 3 chr1 63185807 63186110 -179478243 - AluY SINE Alu -9 302 1 183 271 0 0 chr1 63186891 63186939 -179477414 - MIR3 SINE MIR -2 206 159 195 241 35 23 chr1 63187094 63187181 -179477172 + L2 LINE L2 2718 2805 -509 242 309 141 32 chr1 63187291 63187540 -179476813 + L2 LINE L2 2686 2961 -353 1920 203 131 9 chr1 63188049 63188560 -179475793 - MER90 LTR ERV1 0 614 1 354 281 156 6 chr1 63188568 63188728 -179475625 + MIR SINE MIR 71 254 -8 205 345 35 0 chr1 63189166 63189253 -179475100 - MIR SINE MIR -114 148 59 1221 121 50 29 chr1 63189285 63189525 -179474828 - L1MB4 LINE L1 -1 6179 5935 340 245 10 10 chr1 63189527 63189545 -179474808 - L1MA10 LINE L1 -2 6332 6315 824 225 103 5 chr1 63189545 63189758 -179474595 - L1ME2 LINE L1 -11 6153 5920 372 235 106 35 chr1 63189811 63189981 -179474372 - MIR3 SINE MIR -11 197 16 337 271 22 0 chr1 63190584 63190683 -179473670 + MIR SINE MIR 74 175 -60 313 269 172 7 chr1 63191335 63191480 -179472873 - MIR3 SINE MIR -11 197 26 331 333 67 0 chr1 63191508 63191658 -179472695 + MIR SINE MIR 46 205 -57 734 222 46 0 chr1 63191755 63191908 -179472445 + MER58A DNA MER1_type 28 187 -37 527 364 53 3 chr1 63191987 63192366 -179471987 + L2 LINE L2 2236 2633 -681 203 265 20 0 chr1 63192749 63192798 -179471555 + CT-rich Low_complexity Low_complexity 3 52 0 186 103 0 0 chr1 63192799 63192828 -179471525 + (TC)n Simple_repeat Simple_repeat 2 30 0 348 83 0 0 chr1 63194278 63194326 -179470027 + (ATG)n Simple_repeat Simple_repeat 3 50 0 775 307 9 4 chr1 63194329 63194557 -179469796 - MIR SINE MIR -5 257 29 328 272 96 22 chr1 63194655 63194791 -179469562 - MIR SINE MIR -111 151 6 21 0 0 0 chr1 63196203 63196224 -179468129 + AT_rich Low_complexity Low_complexity 1 21 0 826 168 138 6 chr1 63197363 63197530 -179466823 + MER5A DNA MER1_type 1 189 0 388 265 200 6 chr1 63197575 63197745 -179466608 - MIR SINE MIR -15 247 45 226 191 0 0 chr1 63197738 63197780 -179466573 + L2 LINE L2 3267 3308 -5 * 336 281 29 61 chr1 63198170 63198387 -179465966 - MIR SINE MIR -31 231 16 969 182 49 20 chr1 63198833 63199036 -179465317 + MER20B DNA MER1_type 1 209 -10 227 299 56 28 chr1 63199088 63199195 -179465158 - L2 LINE L2 -5 3267 3158 399 322 26 0 chr1 63199744 63199896 -179464457 - MIR3 SINE MIR -7 201 46 336 288 127 8 chr1 63200007 63200125 -179464228 - MIR SINE MIR -60 148 17 405 270 36 0 chr1 63201374 63201485 -179462868 - L2 LINE L2 -13 3300 3186 256 266 16 0 chr1 63201473 63201537 -179462816 - L2 LINE L2 -243 3070 3006 * 401 328 35 23 chr1 63201762 63202018 -179462335 + MIR SINE MIR 2 260 -2 1700 181 3 35 chr1 63202166 63202480 -179461873 + AluJo SINE Alu 1 304 -8 434 306 120 14 chr1 63202676 63202885 -179461468 - MIR SINE MIR -12 250 20 1816 227 53 34 chr1 63203752 63204471 -179459882 + MER20B DNA MER1_type 1 781 -2 340 199 92 84 chr1 63205893 63206024 -179458329 - L2 LINE L2 0 3313 3182 501 241 51 79 chr1 63206163 63206379 -179457974 - MIR SINE MIR -5 257 48 429 305 17 34 chr1 63206621 63206798 -179457555 - MIR SINE MIR -61 201 28 262 271 100 50 chr1 63207042 63207182 -179457171 - MIR3 SINE MIR -33 175 29 2259 112 80 6 chr1 63207228 63207567 -179456786 + THE1B LTR MaLR 1 364 0 233 309 48 0 chr1 63207593 63207677 -179456676 - MIR3 SINE MIR -9 199 112 355 319 93 16 chr1 63207850 63208032 -179456321 + L2 LINE L2 3113 3308 -5 477 204 0 10 chr1 63210545 63210648 -179453705 + MIR3 SINE MIR 82 183 -25 249 312 13 0 chr1 63211297 63211374 -179452979 + GA-rich Low_complexity Low_complexity 1 78 0 243 295 98 49 chr1 63211605 63211788 -179452565 - MIR SINE MIR -58 204 13 215 219 47 16 chr1 63212365 63212429 -179451924 - MIR SINE MIR -90 172 107 2172 112 100 6 chr1 63213081 63213421 -179450932 + MER83B LTR ERV1 1 372 -6 313 266 53 134 chr1 63213761 63213951 -179450402 - L2 LINE L2 -32 3240 3036 2807 73 3 0 chr1 63213951 63214305 -179450048 + THE1A LTR MaLR 1 355 0 11887 98 6 0 chr1 63214308 63215877 -179448476 + THE1A-int LTR MaLR 3 1580 0 2408 103 41 0 chr1 63215877 63216218 -179448135 + THE1A LTR MaLR 1 355 0 313 266 53 134 chr1 63216218 63216364 -179447989 - L2 LINE L2 -236 3036 2927 244 314 67 0 chr1 63217440 63217545 -179446808 - MIR SINE MIR -106 156 45 797 204 43 0 chr1 63218502 63218664 -179445689 - MER5B DNA MER1_type 0 178 10 219 337 11 0 chr1 63218860 63218955 -179445398 + (CTATA)n Simple_repeat Simple_repeat 4 99 0 207 0 0 0 chr1 63219088 63219111 -179445242 + (CA)n Simple_repeat Simple_repeat 2 24 0 209 282 24 35 chr1 63269581 63269666 -179394687 - MIR SINE MIR -159 103 20 1816 227 53 34 chr1 63270532 63271251 -179393102 + MER20B DNA MER1_type 1 781 -2 319 206 92 84 chr1 63272673 63272804 -179391549 - L2 LINE L2 0 3313 3182 501 241 51 79 chr1 63272943 63273159 -179391194 - MIR SINE MIR -5 257 48 429 305 17 34 chr1 63273401 63273578 -179390775 - MIR SINE MIR -61 201 28 262 271 100 50 chr1 63273822 63273962 -179390391 - MIR3 SINE MIR -33 175 29 2259 112 80 6 chr1 63274008 63274347 -179390006 + THE1B LTR MaLR 1 364 0 233 309 48 0 chr1 63274373 63274457 -179389896 - MIR3 SINE MIR -9 199 112 355 319 93 16 chr1 63274630 63274812 -179389541 + L2 LINE L2 3113 3308 -5 181 219 17 168 chr1 63276460 63276579 -179387774 + MIR SINE MIR 161 261 -1 477 204 0 10 chr1 63277324 63277427 -179386926 + MIR3 SINE MIR 82 183 -25 1325 195 0 12 chr1 63278184 63278425 -179385928 + AluJb SINE Alu 74 311 -1 321 325 49 12 chr1 63278426 63278589 -179385764 - L3b LINE CR1 -147 1436 1268 228 67 0 0 chr1 63278721 63278751 -179385602 + (CA)n Simple_repeat Simple_repeat 1 30 0 413 294 81 0 chr1 63282961 63283097 -179381256 + MIR SINE MIR 79 225 -37 660 248 81 19 chr1 63283721 63283931 -179380422 - MIR SINE MIR -20 242 20 209 275 107 14 chr1 63284021 63284137 -179380216 - MIR SINE MIR -50 212 86 311 327 12 48 chr1 63284190 63284358 -179379995 - MIR3 SINE MIR -28 180 19 181 309 86 25 chr1 63284441 63284522 -179379831 - L3 LINE CR1 -220 1357 1272 2434 79 0 3 chr1 63284598 63284902 -179379451 - AluY SINE Alu -8 303 1 192 222 44 0 chr1 63284928 63284973 -179379380 + L2 LINE L2 3267 3313 0 187 383 12 0 chr1 63284976 63285057 -179379296 - L3 LINE CR1 -400 1177 1096 197 321 0 0 chr1 63285683 63285739 -179378614 - MIR3 SINE MIR -2 206 151 220 241 35 23 chr1 63285886 63285973 -179378380 + L2 LINE L2 2718 2805 -509 309 309 141 32 chr1 63286083 63286332 -179378021 + L2 LINE L2 2686 2961 -353 2074 208 125 0 chr1 63286841 63287351 -179377002 - MER90 LTR ERV1 0 614 1 400 281 156 6 chr1 63287359 63287519 -179376834 + MIR SINE MIR 71 254 -8 228 345 35 0 chr1 63287957 63288044 -179376309 - MIR SINE MIR -114 148 59 1279 133 42 21 chr1 63288076 63288316 -179376037 - L1MB4 LINE L1 -1 6179 5935 351 245 10 10 chr1 63288318 63288336 -179376017 - L1MA10 LINE L1 -2 6332 6315 837 225 103 5 chr1 63288336 63288549 -179375804 - L1ME2 LINE L1 -11 6153 5920 424 235 106 35 chr1 63288602 63288772 -179375581 - MIR3 SINE MIR -11 197 16 369 276 47 15 chr1 63289375 63289524 -179374829 + MIR SINE MIR 74 228 -34 358 254 169 35 chr1 63290124 63290266 -179374087 - MIR3 SINE MIR -11 197 37 372 333 67 0 chr1 63290297 63290447 -179373906 + MIR SINE MIR 46 205 -57 738 222 46 0 chr1 63290543 63290696 -179373657 + MER58A DNA MER1_type 28 187 -37 632 359 53 3 chr1 63290775 63291154 -179373199 + L2 LINE L2 2236 2633 -681 203 265 20 0 chr1 63291537 63291586 -179372767 + CT-rich Low_complexity Low_complexity 3 52 0 186 103 0 0 chr1 63291587 63291616 -179372737 + (TC)n Simple_repeat Simple_repeat 2 30 0 348 83 0 0 chr1 63292969 63293017 -179371336 + (ATG)n Simple_repeat Simple_repeat 3 50 0 856 310 4 4 chr1 63293020 63293249 -179371104 - MIR SINE MIR -5 257 29 374 272 96 22 chr1 63293347 63293483 -179370870 - MIR SINE MIR -111 151 6 21 0 0 0 chr1 63294895 63294916 -179369437 + AT_rich Low_complexity Low_complexity 1 21 0 889 168 138 6 chr1 63296055 63296222 -179368131 + MER5A DNA MER1_type 1 189 0 440 265 200 6 chr1 63296267 63296437 -179367916 - MIR SINE MIR -15 247 45 239 191 0 0 chr1 63296430 63296472 -179367881 + L2 LINE L2 3267 3308 -5 * 384 300 66 53 chr1 63296847 63297074 -179367279 - MIR SINE MIR -13 249 20 965 182 49 20 chr1 63297525 63297728 -179366625 + MER20 DNA MER1_type 1 209 -10 260 299 56 28 chr1 63297780 63297887 -179366466 - L2 LINE L2 -5 3267 3158 446 322 26 0 chr1 63298436 63298588 -179365765 - MIR3 SINE MIR -7 201 46 377 288 127 8 chr1 63298699 63298817 -179365536 - MIR SINE MIR -60 148 17 439 270 36 0 chr1 63300066 63300177 -179364176 - L2 LINE L2 -13 3300 3186 277 266 16 0 chr1 63300165 63300229 -179364124 - L2 LINE L2 -243 3070 3006 * 456 328 35 23 chr1 63300454 63300710 -179363643 + MIR SINE MIR 2 260 -2 1694 181 3 35 chr1 63300858 63301172 -179363181 + AluJo SINE Alu 1 304 -8 241 232 134 12 chr1 63301537 63301619 -179362734 - MIR SINE MIR -90 172 81 2162 112 100 6 chr1 63302253 63302593 -179361760 + MER83B LTR ERV1 1 372 -6 187 219 24 0 chr1 63302850 63302891 -179361462 + MIR SINE MIR 215 256 -6 352 283 95 102 chr1 63302928 63303123 -179361230 - L2 LINE L2 -27 3245 3050 2950 73 3 0 chr1 63303123 63303477 -179360876 + THE1A LTR MaLR 1 355 0 12503 97 6 1 chr1 63303480 63305050 -179359303 + THE1A-int LTR MaLR 3 1580 0 2522 106 41 0 chr1 63305050 63305391 -179358962 + THE1A LTR MaLR 1 355 0 352 283 95 102 chr1 63305391 63305621 -179358732 - L2 LINE L2 -222 3050 2818 294 310 75 61 chr1 63306455 63306668 -179357685 - MIR SINE MIR -2 260 45 858 204 43 0 chr1 63307625 63307787 -179356566 - MER5B DNA MER1_type 0 178 10 219 337 11 0 chr1 63307983 63308078 -179356275 + (CTATA)n Simple_repeat Simple_repeat 4 99 0 186 333 16 0 chr1 63308107 63308170 -179356183 + L2 LINE L2 3245 3308 -5 201 147 0 0 chr1 63308211 63308245 -179356108 + (CA)n Simple_repeat Simple_repeat 2 35 0 302 278 58 87 chr1 63308991 63309039 -179355314 + L2 LINE L2 2929 2977 -295 2378 64 7 3 chr1 63309039 63309335 -179355018 + AluSg SINE Alu 1 297 -13 302 278 58 87 chr1 63309335 63309459 -179354894 + L2 LINE L2 2977 3096 -176 180 217 43 0 chr1 63309523 63309569 -179354784 + L2 LINE L2 3206 3253 -19 388 302 111 17 chr1 63310659 63310831 -179353522 + MIR SINE MIR 75 262 0 1691 131 8 0 chr1 63310873 63311118 -179353235 - AluSg/x SINE Alu -1 311 65 683 239 54 12 chr1 63312054 63312221 -179352132 - MER5B DNA MER1_type -2 176 3 313 314 12 0 chr1 63312310 63312396 -179351957 - L2 LINE L2 0 3272 3186 1070 174 56 0 chr1 63312917 63313113 -179351240 + MER3 DNA MER1_type 1 207 -2 22 0 0 0 chr1 63313121 63313143 -179351210 + AT_rich Low_complexity Low_complexity 1 22 0 199 344 122 15 chr1 63314127 63314258 -179350095 + MIR3 SINE MIR 3 147 -61 * 214 305 53 23 chr1 63314229 63314360 -179349993 + MIR SINE MIR 117 251 -11 203 279 0 0 chr1 63316317 63316360 -179347993 - L2 LINE L2 -12 3260 3218 225 275 84 46 chr1 63316616 63316747 -179347606 + MIR SINE MIR 124 259 -3 279 259 113 81 chr1 63316842 63317027 -179347326 - MIR3 SINE MIR -1 207 17 300 120 0 0 chr1 63317867 63317917 -179346436 + (CA)n Simple_repeat Simple_repeat 1 50 0 732 276 225 22 chr1 63318279 63318604 -179345749 + L2 LINE L2 2327 2585 -728 2343 97 0 0 chr1 63318604 63318902 -179345451 + AluSx SINE Alu 1 298 -14 732 276 225 22 chr1 63318902 63319394 -179344959 + L2 LINE L2 2585 3312 -1 895 271 31 4 chr1 63319947 63320172 -179344181 - MIR SINE MIR -30 232 2 2325 125 0 0 chr1 63320455 63320766 -179343587 + AluSx SINE Alu 1 311 -1 201 250 39 0 chr1 63321042 63321094 -179343259 + MIR SINE MIR 103 156 -106 242 238 0 50 chr1 63321274 63321354 -179342999 + MIR SINE MIR 181 256 -6 642 171 47 31 chr1 63321994 63322123 -179342230 - MER94 DNA DNA 0 134 4 216 335 138 0 chr1 63322145 63322333 -179342020 + MIR SINE MIR 49 262 0 1347 199 41 97 chr1 63322349 63322762 -179341591 + MLT1B LTR MaLR 1 390 0 970 256 7 59 chr1 63323006 63323276 -179341077 - MIR SINE MIR 0 262 7 294 279 115 16 chr1 63323326 63323448 -179340905 - MIR SINE MIR -57 205 72 2300 61 0 7 chr1 63324240 63324520 -179339833 + AluY SINE Alu 34 311 0 1254 266 61 65 chr1 63324751 63325274 -179339079 + LTR33A LTR ERVL 3 523 0 347 357 80 69 chr1 63325540 63325904 -179338449 + L2 LINE L2 2905 3272 0 316 289 108 69 chr1 63325906 63326138 -179338215 + L3 LINE CR1 1326 1566 -11 195 373 71 16 chr1 63326726 63326852 -179337501 - L2 LINE L2 -14 3258 3126 349 262 56 19 chr1 63327036 63327143 -179337210 + MIR SINE MIR 29 139 -123 447 270 219 30 chr1 63327776 63328046 -179336307 - L3 LINE CR1 -46 1531 1211 243 262 16 0 chr1 63328151 63328212 -179336141 - MIR SINE MIR -63 145 84 1881 146 0 21 chr1 63328305 63328593 -179335760 - AluJo SINE Alu -30 282 1 240 35 0 0 chr1 63328698 63328727 -179335626 + (TA)n Simple_repeat Simple_repeat 2 30 0 2390 91 3 0 chr1 63328727 63329024 -179335329 - AluSx SINE Alu -14 298 1 2484 72 0 3 chr1 63329508 63329815 -179334538 - AluY SINE Alu -5 306 1 259 302 32 24 chr1 63330003 63330129 -179334224 + L2 LINE L2 2953 3079 -193 559 300 27 34 chr1 63330960 63331223 -179333130 - MIR SINE MIR 0 262 2 1741 179 3 22 chr1 63331254 63331572 -179332781 + AluJo SINE Alu 1 312 0 2180 135 3 0 chr1 63331620 63331917 -179332436 + AluSx SINE Alu 1 298 -14 34 24 0 0 chr1 63332373 63332414 -179331939 + AT_rich Low_complexity Low_complexity 1 41 0 2524 66 0 3 chr1 63332643 63332945 -179331408 - AluY SINE Alu -10 301 1 190 185 46 0 chr1 63333432 63333497 -179330856 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 294 328 94 10 chr1 63333639 63333831 -179330522 - MIR SINE MIR -10 252 45 298 315 51 79 chr1 63333872 63334088 -179330265 - L2 LINE L2 -35 3237 3028 202 343 118 0 chr1 63334201 63334379 -179329974 - MIR SINE MIR -43 219 21 2258 78 0 4 chr1 63335164 63335488 -179328865 - AluSg SINE Alu 0 323 1 943 326 73 10 chr1 63336403 63336885 -179327468 - L3 LINE CR1 -3 1574 1063 251 279 10 4 chr1 63338991 63339095 -179325258 + L2 LINE L2 3116 3262 -10 378 238 67 55 chr1 63339215 63339379 -179324974 - MIR SINE MIR -49 213 48 447 228 21 62 chr1 63339413 63339558 -179324795 - MIR SINE MIR 0 262 124 243 337 0 0 chr1 63340205 63340294 -179324059 + L2 LINE L2 2996 3084 -188 310 351 13 26 chr1 63340315 63340466 -179323887 - L2 LINE L2 0 3272 3124 215 245 106 32 chr1 63340759 63340853 -179323500 + MIR SINE MIR 36 136 -72 222 308 37 19 chr1 63341798 63341905 -179322448 - MIR SINE MIR -70 192 84 520 237 65 12 chr1 63342418 63342587 -179321766 + MIR SINE MIR 63 240 -22 252 190 152 38 chr1 63342747 63342826 -179321527 - MIR SINE MIR -63 145 58 299 275 20 56 chr1 63342910 63343043 -179321310 - MIR SINE MIR -63 145 43 346 314 95 0 chr1 63343766 63343903 -179320450 + MIR SINE MIR 45 194 -68 180 77 0 0 chr1 63347102 63347128 -179317225 + (A)n Simple_repeat Simple_repeat 1 26 0 465 322 23 6 chr1 63347830 63348001 -179316352 + MER91B DNA MER1_type 12 185 -5 1759 168 28 0 chr1 63348920 63349206 -179315147 - AluJb SINE Alu -18 294 1 187 345 27 54 chr1 63351656 63351804 -179312549 + L2 LINE L2 2917 3060 -212 485 366 30 49 chr1 63351922 63352250 -179312103 - L2 LINE L2 -19 3253 2932 247 228 0 38 chr1 63352419 63352498 -179311855 + GA-rich Low_complexity Low_complexity 4 79 0 307 332 14 27 chr1 63352998 63353189 -179311164 + MIR SINE MIR 11 200 -62 258 337 59 0 chr1 63353199 63353300 -179311053 + L1ME4a LINE L1 5433 5539 -582 433 216 10 0 chr1 63353308 63353405 -179310948 + MIR SINE MIR 134 231 -31 813 315 36 14 chr1 63353446 63353865 -179310488 + L1ME4a LINE L1 5533 5960 -161 461 313 156 29 chr1 63354005 63354567 -179309786 + L2 LINE L2 2461 3077 -195 1094 140 47 38 chr1 63354762 63354997 -179309356 - L1MB3 LINE L1 -3 6180 5944 339 25 0 0 chr1 63355451 63355491 -179308862 + (CA)n Simple_repeat Simple_repeat 2 41 0 398 230 193 0 chr1 63355835 63355996 -179308357 + MIR SINE MIR 50 241 -21 396 273 54 39 chr1 63356168 63356373 -179307980 + MLT1K LTR MaLR 381 588 0 497 283 100 8 chr1 63356530 63356781 -179307572 + L1MC4a LINE L1 6413 6686 -1122 213 209 0 0 chr1 63356791 63356834 -179307519 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 2357 92 44 6 chr1 63357249 63357587 -179306766 - L1PA10 LINE L1 -6 6162 5812 575 265 71 19 chr1 63357791 63358002 -179306351 - MIR SINE MIR -17 245 24 285 330 141 15 chr1 63358510 63358716 -179305637 + MIR SINE MIR 19 250 -12 2275 201 28 7 chr1 63358764 63359221 -179305132 + MLT1C LTR MaLR 1 467 0 262 152 197 30 chr1 63359346 63359412 -179304941 + MIR3 SINE MIR 110 186 -22 269 363 35 0 chr1 63359839 63359952 -179304401 - MIR SINE MIR -124 138 22 240 248 89 50 chr1 63360199 63360300 -179304053 - L2 LINE L2 -26 3246 3142 387 0 0 0 chr1 63361360 63361403 -179302950 + (CA)n Simple_repeat Simple_repeat 2 44 0 2566 129 53 94 chr1 63362669 63362775 -179301578 + MER67A LTR ERV1 1 110 -433 2266 125 0 0 chr1 63362775 63363086 -179301267 - AluSq SINE Alu -2 311 1 2566 129 53 94 chr1 63363086 63363545 -179300808 + MER67A LTR ERV1 110 543 0 698 293 56 4 chr1 63363667 63363916 -179300437 + MIR SINE MIR 1 262 0 241 259 78 35 chr1 63363927 63364032 -179300321 + L2 LINE L2 3193 3305 -8 1975 133 58 109 chr1 63364032 63364483 -179299870 - MSTA LTR MaLR 0 428 1 305 315 86 10 chr1 63365184 63365392 -179298961 - MIR SINE MIR -6 256 33 1735 133 49 11 chr1 63365477 63365741 -179298612 + MER1B DNA MER1_type 1 274 -65 413 222 0 0 chr1 63365875 63365947 -179298406 + MER1B DNA MER1_type 257 328 -1 276 294 29 52 chr1 63366167 63366303 -179298050 - MIR SINE MIR -110 152 20 894 231 65 8 chr1 63366324 63366571 -179297782 + MIR SINE MIR 2 262 0 275 246 0 14 chr1 63366629 63366698 -179297655 - MIR SINE MIR -159 103 36 340 297 40 20 chr1 63366895 63366996 -179297357 - L2 LINE L2 0 3272 3170 1942 150 53 19 chr1 63367012 63367373 -179296980 + THE1C LTR MaLR 1 373 -2 27 0 0 0 chr1 63367585 63367612 -179296741 + AT_rich Low_complexity Low_complexity 1 27 0 189 213 71 174 chr1 63368193 63368348 -179296005 + MIR SINE MIR 117 255 -7 237 285 134 12 chr1 63368351 63368523 -179295830 + MIR SINE MIR 52 244 -18 1978 143 17 0 chr1 63368544 63368838 -179295515 + AluSx SINE Alu 1 299 -13 186 229 21 0 chr1 63368929 63368977 -179295376 - L2 LINE L2 -1 3271 3223 536 335 12 20 chr1 63370705 63370950 -179293403 - MIR SINE MIR 0 262 20 418 224 216 47 chr1 63371305 63371559 -179292794 + L2 LINE L2 3015 3311 -2 358 355 89 31 chr1 63371561 63371820 -179292533 + L2 LINE L2 2991 3264 -8 226 307 172 59 chr1 63371961 63372199 -179292154 - MLT1I LTR MaLR -8 401 137 2301 89 0 0 chr1 63372452 63372788 -179291565 - AluY SINE Alu 0 337 2 567 265 64 5 chr1 63372935 63373139 -179291214 - MIR SINE MIR 0 262 47 25 31 0 0 chr1 63373450 63373482 -179290871 + AT_rich Low_complexity Low_complexity 1 32 0 290 269 93 19 chr1 63373641 63373749 -179290604 + MIR SINE MIR 38 153 -55 307 302 35 26 chr1 63373820 63373936 -179290417 - L2 LINE L2 0 3313 3197 289 310 116 26 chr1 63373937 63374092 -179290261 + MIR SINE MIR 94 262 0 276 183 0 50 chr1 63374128 63374188 -179290165 + L2 LINE L2 3216 3272 0 996 207 21 42 chr1 63374782 63375019 -179289334 + MIR SINE MIR 31 262 0 200 331 78 42 chr1 63375345 63375468 -179288885 - L2 LINE L2 -162 3110 2980 198 0 0 0 chr1 63375468 63375490 -179288863 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 200 331 78 42 chr1 63375490 63375508 -179288845 - L2 LINE L2 -292 2980 2964 362 266 265 6 chr1 63375611 63375813 -179288540 - MIR SINE MIR 0 262 9 340 282 13 94 chr1 63376390 63376460 -179287893 - L2 LINE L2 -14 3258 3205 841 233 7 80 chr1 63376460 63376735 -179287618 - MIR SINE MIR -3 259 5 340 282 13 94 chr1 63376735 63376813 -179287540 - L2 LINE L2 -67 3205 3122 300 83 0 0 chr1 63376904 63376952 -179287401 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 295 313 90 30 chr1 63378051 63378252 -179286101 + MIR SINE MIR 23 235 -27 353 348 32 41 chr1 63378319 63378635 -179285718 - L2 LINE L2 -452 2862 2550 218 344 118 0 chr1 63378822 63378915 -179285438 + MER5C DNA MER1_type 16 119 -205 295 159 143 0 chr1 63379033 63379096 -179285257 + MER5C DNA MER1_type 248 319 -5 242 29 29 0 chr1 63380091 63380126 -179284227 + (TG)n Simple_repeat Simple_repeat 2 37 0 314 344 25 6 chr1 63380624 63380787 -179283566 + MIR SINE MIR 14 179 -83 2347 96 0 7 chr1 63381807 63382109 -179282244 + AluSx SINE Alu 1 300 -12 436 283 51 23 chr1 63382513 63382690 -179281663 + MIR SINE MIR 23 204 -58 308 314 101 6 chr1 63383196 63383355 -179280998 + L2 LINE L2 3107 3280 -33 485 345 26 13 chr1 63383372 63383598 -179280755 + MIR SINE MIR 3 231 -31 459 270 22 22 chr1 63384334 63384471 -179279882 - MIR SINE MIR 0 262 126 228 333 78 0 chr1 63384830 63384920 -179279433 - L2 LINE L2 -5 3267 3171 372 306 19 31 chr1 63385072 63385232 -179279121 + MIR3 SINE MIR 41 198 -10 312 328 82 8 chr1 63385265 63385387 -179278966 - L2 LINE L2 -1 3271 3141 505 312 111 10 chr1 63385438 63385637 -179278716 - MIR SINE MIR -11 251 33 23 0 0 0 chr1 63385672 63385695 -179278658 + AT_rich Low_complexity Low_complexity 1 23 0 680 291 71 41 chr1 63386210 63386574 -179277779 + L2 LINE L2 2939 3313 0 183 258 11 75 chr1 63387481 63387574 -179276779 - L2 LINE L2 -1 3312 3226 349 283 53 9 chr1 63387817 63387930 -179276423 + MIR SINE MIR 22 139 -123 333 209 45 0 chr1 63387981 63388048 -179276305 - MIR SINE MIR -76 186 117 332 197 0 0 chr1 63388064 63388125 -179276228 - MIR SINE MIR -105 157 97 1342 211 75 16 chr1 63388146 63388464 -179275889 - MER58B DNA MER1_type -1 340 4 572 249 102 49 chr1 63389534 63389739 -179274614 + MIR SINE MIR 12 227 -35 464 259 29 29 chr1 63389883 63390022 -179274331 + MIR SINE MIR 3 141 -121 846 184 48 34 chr1 63390144 63390350 -179274003 + MER3 DNA MER1_type 1 209 0 2472 84 3 0 chr1 63390896 63391204 -179273149 + AluSg SINE Alu 1 309 -1 332 273 53 73 chr1 63392045 63392195 -179272158 - MIR SINE MIR -53 209 63 220 272 35 18 chr1 63392339 63392424 -179271929 - MIR SINE MIR -64 144 57 284 286 171 9 chr1 63393323 63393428 -179270925 + MIR SINE MIR 32 153 -109 * 663 264 15 50 chr1 63393419 63393620 -179270733 - MIR SINE MIR 0 262 69 283 395 18 0 chr1 63394842 63394956 -179269397 + MIR SINE MIR 30 145 -63 225 345 53 77 chr1 63395001 63395158 -179269195 - L2 LINE L2 0 3272 3113 2579 134 34 2 chr1 63395158 63395599 -179268754 - L1MB3 LINE L1 -2 6181 5727 225 345 53 77 chr1 63395599 63395908 -179268445 - L2 LINE L2 -159 3113 2817 390 184 0 0 chr1 63395908 63395984 -179268369 + GA-rich Low_complexity Low_complexity 1 76 0 238 266 16 0 chr1 63396154 63396218 -179268135 + MER20B DNA MER1_type 114 178 -605 206 133 0 0 chr1 63396279 63396309 -179268044 + (A)n Simple_repeat Simple_repeat 1 30 0 1139 98 0 0 chr1 63396335 63396508 -179267845 - L1P LINE L1 -1044 5102 4930 749 185 37 0 chr1 63396508 63396642 -179267711 + L1PA8A LINE L1 5991 6130 -1 272 315 167 9 chr1 63396935 63397043 -179267310 + L2 LINE L2 3142 3266 -6 317 275 0 0 chr1 63397677 63397746 -179266607 - MIR SINE MIR -59 149 81 23 0 0 0 chr1 63397762 63397785 -179266568 + AT_rich Low_complexity Low_complexity 1 23 0 388 311 138 20 chr1 63398182 63398378 -179265975 + L1ME4a LINE L1 5478 5696 -425 523 245 144 18 chr1 63398386 63398725 -179265628 + L1ME4a LINE L1 5738 6119 -2 302 328 49 8 chr1 63398734 63398856 -179265497 + MIR SINE MIR 60 186 -76 22 56 0 0 chr1 63399229 63399265 -179265088 + AT_rich Low_complexity Low_complexity 1 36 0 251 295 8 66 chr1 63399680 63399802 -179264551 + MIR SINE MIR 116 230 -32 227 330 150 0 chr1 63400675 63400775 -179263578 - L2 LINE L2 -8 3264 3150 206 371 48 0 chr1 63401143 63401248 -179263105 + MIR SINE MIR 70 179 -83 25 0 0 0 chr1 63401879 63401904 -179262449 + AT_rich Low_complexity Low_complexity 1 25 0 614 245 28 51 chr1 63402181 63402397 -179261956 + L2 LINE L2 3103 3313 0 483 274 52 13 chr1 63402420 63402573 -179261780 + MIR SINE MIR 96 254 -8 1955 121 18 3 chr1 63402595 63402877 -179261476 + AluSx SINE Alu 3 288 -24 276 53 0 0 chr1 63402880 63402918 -179261435 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 660 245 5 43 chr1 63403153 63403337 -179261016 + MER58A DNA MER1_type 48 224 0 415 290 45 60 chr1 63403617 63403817 -179260536 + MIR SINE MIR 20 216 -46 315 293 82 20 chr1 63404347 63404494 -179259859 + MIR3 SINE MIR 53 208 0 387 235 70 0 chr1 63404974 63405089 -179259264 - MIR SINE MIR -40 222 100 2244 151 53 7 chr1 63405099 63405530 -179258823 + L1MA8 LINE L1 5609 6059 -232 799 270 30 33 chr1 63405544 63405881 -179258472 - MER20B DNA MER1_type -447 336 1 302 233 107 19 chr1 63405994 63406097 -179258256 + MIR SINE MIR 97 208 -54 224 279 51 38 chr1 63406583 63406662 -179257691 - L2 LINE L2 -5 3267 3188 204 310 84 0 chr1 63406892 63406963 -179257390 + L2 LINE L2 3191 3267 -5 239 363 88 0 chr1 63407070 63407172 -179257181 + L2 LINE L2 3129 3239 -33 1468 150 0 17 chr1 63407195 63407435 -179256918 + MER46A DNA MER2_type 1 236 0 430 246 222 0 chr1 63407690 63407816 -179256537 + MIR SINE MIR 25 178 -84 691 309 59 59 chr1 63408721 63409026 -179255327 - L3 LINE CR1 -9 1568 1260 2137 101 3 14 chr1 63409026 63409342 -179255011 + AluSx SINE Alu 1 313 0 691 309 59 59 chr1 63409342 63409426 -179254927 - L3 LINE CR1 -316 1261 1178 375 380 52 10 chr1 63410124 63410316 -179254037 - L3 LINE CR1 -405 1172 973 993 245 111 36 chr1 63410511 63410952 -179253401 + MER74B LTR ERVL 66 539 -83 219 36 0 0 chr1 63410952 63410980 -179253373 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2272 137 60 0 chr1 63411021 63411401 -179252952 + L1PA13 LINE L1 5761 6163 0 883 253 73 4 chr1 63411446 63411691 -179252662 + MIR SINE MIR 1 262 0 301 274 39 10 chr1 63411690 63411792 -179252561 + MIR SINE MIR 153 257 -5 * 2524 192 12 0 chr1 63411802 63412303 -179252050 - L1MB3 LINE L1 -2 6181 5675 23 0 0 0 chr1 63413758 63413781 -179250572 + AT_rich Low_complexity Low_complexity 1 23 0 328 274 62 26 chr1 63414030 63414143 -179250210 + L2 LINE L2 3193 3309 -4 342 317 198 0 chr1 63414614 63414781 -179249572 + MIR SINE MIR 31 230 -32 21 0 0 0 chr1 63414787 63414808 -179249545 + AT_rich Low_complexity Low_complexity 1 21 0 410 306 33 33 chr1 63414926 63415106 -179249247 - MIR3 SINE MIR 0 208 29 429 333 64 17 chr1 63415456 63415690 -179248663 + L2 LINE L2 3045 3289 -24 1123 169 58 105 chr1 63415857 63416219 -179248134 + MLT1A1 LTR MaLR 19 363 -2 298 294 39 39 chr1 63417008 63417163 -179247190 - MIR SINE MIR -59 149 34 244 325 68 26 chr1 63417329 63417446 -179246907 + MIR SINE MIR 137 258 -4 307 238 75 71 chr1 63417931 63418140 -179246213 + LTR33A LTR ERVL 43 221 -302 507 286 24 0 chr1 63418210 63418378 -179245975 + LTR33 LTR ERVL 350 521 0 263 355 112 7 chr1 63418638 63418790 -179245563 + MIR SINE MIR 45 212 -50 474 18 0 0 chr1 63419316 63419371 -179244982 + (CA)n Simple_repeat Simple_repeat 1 55 0 363 60 0 0 chr1 63420626 63420676 -179243677 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 459 241 53 57 chr1 63420676 63420941 -179243412 + L1ME4a LINE L1 5855 6118 -3 31 26 0 0 chr1 63421089 63421127 -179243226 + AT_rich Low_complexity Low_complexity 1 38 0 2565 69 0 0 chr1 63421136 63421440 -179242913 + AluSg SINE Alu 1 304 -6 22 35 0 0 chr1 63421642 63421671 -179242682 + AT_rich Low_complexity Low_complexity 1 29 0 283 238 16 0 chr1 63421796 63421859 -179242494 + L2 LINE L2 3249 3312 -1 385 328 72 26 chr1 63422299 63422494 -179241859 + MIR SINE MIR 47 250 -12 308 272 0 39 chr1 63422934 63423037 -179241316 - MIR SINE MIR -115 147 49 301 254 42 0 chr1 63423198 63423269 -179241084 - MIR3 SINE MIR -22 186 113 247 301 117 0 chr1 63423382 63423485 -179240868 - L2 LINE L2 0 3272 3158 290 327 171 37 chr1 63423528 63423745 -179240608 + MIR SINE MIR 13 258 -4 1506 188 52 0 chr1 63423752 63424023 -179240330 - AluJb SINE Alu -12 300 16 332 275 34 67 chr1 63424457 63424606 -179239747 - MIR SINE MIR -34 228 85 293 323 54 0 chr1 63425396 63425526 -179238827 - MIR SINE MIR -15 247 111 3231 226 32 59 chr1 63425549 63426419 -179237934 - L1MB7 LINE L1 -6 6178 5332 188 289 58 0 chr1 63426420 63426472 -179237881 - MIR SINE MIR -193 69 15 239 218 68 42 chr1 63426641 63426750 -179237603 - MIR SINE MIR -52 210 98 513 314 81 24 chr1 63426793 63427041 -179237312 + MIR SINE MIR 1 262 0 369 307 39 0 chr1 63427045 63427172 -179237181 - MER94 DNA DNA -2 132 1 199 345 11 11 chr1 63427222 63427309 -179237044 - L2 LINE L2 -40 3232 3146 674 189 8 0 chr1 63427646 63427768 -179236585 + FLAM_C SINE Alu 11 133 -10 491 244 53 15 chr1 63428040 63428171 -179236182 - L2 LINE L2 0 3313 3178 26 0 0 0 chr1 63428442 63428468 -179235885 + AT_rich Low_complexity Low_complexity 1 26 0 2289 105 0 0 chr1 63428570 63428874 -179235479 - AluSx SINE Alu -6 306 3 228 302 83 77 chr1 63429304 63429473 -179234880 + MIR3 SINE MIR 36 205 -3 29 47 0 0 chr1 63429477 63429520 -179234833 + AT_rich Low_complexity Low_complexity 1 43 0 213 245 0 38 chr1 63429610 63429663 -179234690 - MIR SINE MIR -125 83 33 383 210 20 10 chr1 63429669 63429769 -179234584 - Charlie7 DNA MER1_type -4 2608 2508 2024 143 0 0 chr1 63429802 63430088 -179234265 - AluSx SINE Alu -26 286 1 303 227 68 38 chr1 63430088 63430220 -179234133 - Charlie7 DNA MER1_type -2462 150 15 6629 122 38 25 chr1 63430346 63430389 -179233964 - L1MA2 LINE L1 0 6304 6263 210 37 0 0 chr1 63430389 63430416 -179233937 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2245 84 0 7 chr1 63430416 63430701 -179233652 - AluY SINE Alu -28 283 1 6629 122 38 25 chr1 63430701 63432765 -179231588 - L1MA2 LINE L1 -40 6264 4166 299 328 88 16 chr1 63433147 63433272 -179231081 + L2 LINE L2 3138 3271 -1 1077 224 42 115 chr1 63434137 63434538 -179229815 - MLT1B LTR MaLR -16 374 3 310 299 60 8 chr1 63434611 63434745 -179229608 - MIR SINE MIR -60 202 62 373 303 96 29 chr1 63434752 63434960 -179229393 + MIR SINE MIR 31 252 -10 202 294 188 0 chr1 63435736 63435821 -179228532 - MER5B DNA MER1_type -77 101 1 373 299 47 8 chr1 63436230 63436357 -179227996 + L2 LINE L2 3182 3313 0 210 71 0 0 chr1 63436617 63436645 -179227708 + (A)n Simple_repeat Simple_repeat 1 28 0 400 244 65 16 chr1 63437042 63437165 -179227188 - MIR SINE MIR -74 188 60 536 303 37 67 chr1 63437593 63437890 -179226463 + LTR16A LTR ERVL 156 443 -7 21 57 0 0 chr1 63438362 63438397 -179225956 + AT_rich Low_complexity Low_complexity 1 35 0 888 249 91 38 chr1 63438431 63438804 -179225549 - L1ME4a LINE L1 0 6121 5729 786 306 137 31 chr1 63439804 63440599 -179223754 - L2 LINE L2 0 3313 2426 257 241 147 28 chr1 63440784 63440935 -179223418 + MIR3 SINE MIR 84 256 -6 247 258 0 0 chr1 63442241 63442303 -179222050 - L2 LINE L2 -5 3267 3206 473 255 56 92 chr1 63442307 63442558 -179221795 - MIR SINE MIR -12 250 9 271 349 20 40 chr1 63442906 63443055 -179221298 - MIR SINE MIR -85 177 32 266 259 121 17 chr1 63443586 63443702 -179220651 - MIR SINE MIR -127 135 8 212 333 116 0 chr1 63444627 63444696 -179219657 + L2 LINE L2 3236 3312 -1 186 368 0 0 chr1 63444716 63444773 -179219580 + L2 LINE L2 2434 2490 -824 220 351 69 52 chr1 63444823 63444997 -179219356 + L2 LINE L2 2588 2764 -550 251 302 167 0 chr1 63445042 63445138 -179219215 - L2 LINE L2 -9 3304 3193 1815 167 3 3 chr1 63445534 63445839 -179218514 + AluJo SINE Alu 1 305 0 675 299 6 0 chr1 63446049 63446226 -179218127 - MIR SINE MIR -7 255 78 2707 145 14 63 chr1 63446282 63446745 -179217608 + MER31A LTR ERV1 1 438 -47 2204 134 0 6 chr1 63446745 63447059 -179217294 - AluSx SINE Alu 0 312 1 2707 145 14 63 chr1 63447059 63447105 -179217248 + MER31A LTR ERV1 438 485 0 209 305 0 0 chr1 63447126 63447185 -179217168 + MIR SINE MIR 193 251 -11 465 290 37 12 chr1 63447267 63447429 -179216924 - MIR SINE MIR -76 186 21 2585 147 45 43 chr1 63448619 63449081 -179215272 - MLT1C LTR MaLR 0 467 5 373 345 53 29 chr1 63449086 63449213 -179215140 - MIR SINE MIR -50 212 77 2632 141 30 19 chr1 63449213 63449640 -179214713 - MSTB1 LTR MaLR 0 432 1 373 345 53 29 chr1 63449640 63449718 -179214635 - MIR SINE MIR -185 77 2 2254 123 59 3 chr1 63450019 63450359 -179213994 + MER46B DNA MER2_type 2 235 -1 21 57 0 0 chr1 63450677 63450712 -179213641 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 63451715 63451738 -179212615 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 63452070 63452092 -179212261 + AT_rich Low_complexity Low_complexity 1 22 0 357 305 109 11 chr1 63452689 63452863 -179211490 + MIR SINE MIR 2 192 -70 2368 152 28 3 chr1 63452964 63453319 -179211034 - THE1B LTR MaLR 0 364 1 1439 195 53 102 chr1 63453630 63454228 -179210125 + MER34B LTR ERV1 11 565 0 199 74 0 0 chr1 63454758 63454785 -179209568 + MIR SINE MIR 122 148 -114 463 243 160 61 chr1 63454831 63455285 -179209068 + L1ME3 LINE L1 5466 5937 -225 214 349 87 32 chr1 63457789 63457915 -179206438 + L2 LINE L2 3123 3255 -17 236 222 32 48 chr1 63458492 63458555 -179205798 + MIR SINE MIR 24 85 -177 2156 100 0 0 chr1 63458636 63458945 -179205408 - AluY SINE Alu 0 309 1 185 315 86 37 chr1 63459055 63459217 -179205136 - MIR SINE MIR -44 218 49 355 322 74 61 chr1 63459255 63459581 -179204772 - L2 LINE L2 -21 3251 2922 949 162 8 115 chr1 63459611 63459845 -179204508 - MER3 DNA MER1_type 0 209 1 211 250 85 117 chr1 63461106 63461294 -179203059 + L2 LINE L2 2633 2814 -500 200 279 174 45 chr1 63461743 63461944 -179202409 + L2 LINE L2 2822 3048 -224 235 331 228 14 chr1 63462785 63462930 -179201423 + MER5B DNA MER1_type 2 177 -1 265 329 88 7 chr1 63464421 63464558 -179199795 - MIR SINE MIR -108 154 7 381 280 38 93 chr1 63465583 63465819 -179198534 - MIR SINE MIR -6 256 34 1139 166 11 5 chr1 63466829 63467016 -179197337 - MER5A DNA MER1_type -1 188 1 493 310 40 12 chr1 63467080 63467287 -179197066 - MIR SINE MIR -31 231 14 484 238 167 84 chr1 63468767 63468796 -179195557 + MIR SINE MIR 8 33 -229 1893 156 3 13 chr1 63468796 63469104 -179195249 + AluSx SINE Alu 1 305 -7 484 238 167 84 chr1 63469104 63469301 -179195052 + MIR SINE MIR 33 253 -9 192 40 0 0 chr1 63469311 63469336 -179195017 + (CACCAT)n Simple_repeat Simple_repeat 2 26 0 630 188 0 8 chr1 63469551 63469668 -179194685 - L1MB7 LINE L1 -19 6165 6050 2625 136 20 30 chr1 63469691 63470132 -179194221 - L1MA8 LINE L1 -6 6285 5849 2436 58 3 0 chr1 63470142 63470433 -179193920 - AluY SINE Alu -7 304 13 755 250 60 48 chr1 63470560 63470812 -179193541 + MIR SINE MIR 1 255 -7 598 135 0 0 chr1 63470866 63470955 -179193398 - MER5A DNA MER1_type 0 189 101 283 227 53 27 chr1 63471096 63471171 -179193182 + MIR SINE MIR 173 249 -13 180 273 91 50 chr1 63471937 63472036 -179192317 - L2 LINE L2 -2 3311 3209 349 279 62 31 chr1 63472245 63472374 -179191979 - MIR SINE MIR -114 148 16 210 276 166 4 chr1 63472410 63472514 -179191839 + MIR SINE MIR 20 143 -65 584 229 29 71 chr1 63472674 63473004 -179191349 + L1MA10 LINE L1 5863 6333 -1 520 272 47 30 chr1 63473652 63473814 -179190539 - MIR SINE MIR 0 262 95 2154 125 0 26 chr1 63473814 63474127 -179190226 + AluSx SINE Alu 1 305 -7 603 274 59 55 chr1 63474178 63474415 -179189938 - MIR SINE MIR 0 262 25 185 286 0 0 chr1 63475063 63475105 -179189248 - L2 LINE L2 -97 3175 3134 347 222 157 26 chr1 63475232 63475385 -179188968 + L2 LINE L2 2837 3009 -263 369 0 0 0 chr1 63475410 63475451 -179188902 + (CA)n Simple_repeat Simple_repeat 1 41 0 218 293 123 42 chr1 63475456 63475668 -179188685 - L2 LINE L2 -203 3069 2841 27 49 0 0 chr1 63476003 63476044 -179188309 + AT_rich Low_complexity Low_complexity 1 41 0 459 274 94 47 chr1 63476435 63476647 -179187706 + MIR SINE MIR 8 229 -33 356 298 99 33 chr1 63477027 63477148 -179187205 - L2 LINE L2 -3 3269 3141 601 261 172 19 chr1 63477219 63477434 -179186919 + MIR SINE MIR 5 252 -10 196 320 67 0 chr1 63477672 63477747 -179186606 + L2 LINE L2 3193 3272 0 204 260 43 15 chr1 63477819 63477889 -179186464 - MIR SINE MIR -92 116 50 414 169 36 0 chr1 63478363 63478446 -179185907 - L2 LINE L2 -41 3272 3187 22 35 0 0 chr1 63478470 63478499 -179185854 + AT_rich Low_complexity Low_complexity 1 29 0 310 258 102 55 chr1 63478510 63478638 -179185715 + L2 LINE L2 3139 3272 0 222 37 0 0 chr1 63478640 63478667 -179185686 + (CATG)n Simple_repeat Simple_repeat 2 28 0 187 400 0 18 chr1 63480082 63480137 -179184216 + L2 LINE L2 3125 3178 -94 2010 138 0 0 chr1 63480641 63480950 -179183403 - AluSx SINE Alu 0 309 1 23 0 0 0 chr1 63481208 63481231 -179183122 + AT_rich Low_complexity Low_complexity 1 23 0 375 317 113 16 chr1 63481333 63481519 -179182834 + MIR SINE MIR 48 251 -11 235 176 338 0 chr1 63482077 63482145 -179182208 - L2 LINE L2 -14 3299 3209 661 263 25 15 chr1 63482308 63482506 -179181847 - MIR SINE MIR -6 256 57 237 274 0 0 chr1 63482968 63483019 -179181334 + polypurine Low_complexity Low_complexity 2 52 0 227 241 19 19 chr1 63483083 63483137 -179181216 + MIR SINE MIR 18 71 -137 260 139 47 0 chr1 63483554 63483597 -179180756 - PRIMA41-int LTR ERV1 -2624 5132 5088 2301 97 17 0 chr1 63483685 63484029 -179180324 - AluSq SINE Alu 0 349 1 2738 20 0 3 chr1 63484198 63484503 -179179850 - AluYa5 SINE Alu -6 305 2 717 240 52 11 chr1 63484753 63485027 -179179326 - LTR16C LTR ERVL 0 491 182 232 344 0 21 chr1 63485324 63485417 -179178936 + L2 LINE L2 3182 3272 0 404 275 186 10 chr1 63485443 63485636 -179178717 - MIR SINE MIR -35 227 1 613 277 29 26 chr1 63486686 63486893 -179177460 + MIR SINE MIR 18 224 -38 23 0 0 0 chr1 63487555 63487578 -179176775 + AT_rich Low_complexity Low_complexity 1 23 0 300 267 72 56 chr1 63488203 63488383 -179175970 + MIR SINE MIR 9 191 -71 1305 221 123 7 chr1 63488445 63488753 -179175600 - MER2 DNA MER2_type 0 344 1 208 264 189 9 chr1 63488940 63489046 -179175307 - MIR3 SINE MIR -22 186 62 2477 81 0 0 chr1 63489120 63489427 -179174926 - AluY SINE Alu -4 307 1 341 313 37 65 chr1 63489444 63489661 -179174692 - MIR SINE MIR -50 212 2 1059 228 24 54 chr1 63489857 63490191 -179174162 - MER33 DNA MER1_type 0 324 1 1520 177 128 15 chr1 63490807 63491135 -179173218 - MLT1A1 LTR MaLR 0 365 1 217 73 24 24 chr1 63491378 63491389 -179172964 + (CAAAA)n Simple_repeat Simple_repeat 2 12 -30 2517 80 0 3 chr1 63491389 63491701 -179172652 + AluY SINE Alu 1 311 0 217 73 24 24 chr1 63491701 63491730 -179172623 + (CAAAA)n Simple_repeat Simple_repeat 11 42 0 317 295 70 19 chr1 63492925 63493058 -179171295 + MIR SINE MIR 46 190 -62 261 307 61 55 chr1 63493505 63493668 -179170685 - MIR SINE MIR -79 183 20 422 304 152 40 chr1 63494702 63494998 -179169355 - L2 LINE L2 -39 3233 2905 1049 177 78 85 chr1 63495159 63495430 -179168923 + AluJb SINE Alu 1 269 -43 288 53 0 0 chr1 63496025 63496063 -179168290 + (CA)n Simple_repeat Simple_repeat 2 39 0 1496 258 83 34 chr1 63496268 63496764 -179167589 + MLT1E LTR MaLR 74 593 0 233 321 24 12 chr1 63497239 63497323 -179167030 - MIR SINE MIR -79 183 99 7448 38 6 5 chr1 63497330 63498172 -179166181 + L1PA5 LINE L1 5310 6152 -2 474 249 53 89 chr1 63498752 63498977 -179165376 - MIR SINE MIR -6 256 40 231 204 20 0 chr1 63498977 63499026 -179165327 + CT-rich Low_complexity Low_complexity 2 51 0 293 336 40 16 chr1 63500656 63500781 -179163572 + MIR SINE MIR 1 128 -134 * 356 340 20 56 chr1 63500769 63500966 -179163387 + L2 LINE L2 3078 3267 -5 1656 244 97 72 chr1 63501446 63502130 -179162223 + MER21B LTR ERV1 21 721 -142 226 307 68 23 chr1 63502320 63502408 -179161945 - L2 LINE L2 -85 3187 3096 1919 282 105 7 chr1 63502683 63503414 -179160939 + L2 LINE L2 1925 2727 -587 234 0 0 0 chr1 63503433 63503459 -179160894 + (TA)n Simple_repeat Simple_repeat 2 27 0 213 276 19 135 chr1 63503464 63503620 -179160733 - MIR SINE MIR -123 139 2 1655 152 11 0 chr1 63503656 63503919 -179160434 + AluJo SINE Alu 1 266 -46 506 241 118 10 chr1 63504033 63504228 -179160125 - L2 LINE L2 -4 3309 3094 1887 156 3 7 chr1 63504268 63504280 -179160073 - AluJb SINE Alu -6 306 295 387 0 0 0 chr1 63504280 63504323 -179160030 + (TG)n Simple_repeat Simple_repeat 2 44 0 1887 156 3 7 chr1 63504323 63504617 -179159736 - AluJb SINE Alu -17 295 1 414 247 44 60 chr1 63504896 63505078 -179159275 - L1M4 LINE L1 -1402 4744 4566 1018 265 78 64 chr1 63505112 63505787 -179158566 + L1ME3A LINE L1 5256 5940 -222 1839 169 7 10 chr1 63505948 63506255 -179158098 - AluJb SINE Alu -6 306 1 527 274 28 86 chr1 63507322 63507384 -179156969 + MIR SINE MIR 23 87 -175 1239 123 39 0 chr1 63507384 63507588 -179156765 - L1MA4 LINE L1 -5 6295 6084 527 274 28 86 chr1 63507588 63507780 -179156573 + MIR SINE MIR 87 262 0 21 0 0 0 chr1 63507903 63507924 -179156429 + AT_rich Low_complexity Low_complexity 1 21 0 256 346 109 26 chr1 63508118 63508274 -179156079 + L2 LINE L2 3104 3272 0 562 328 35 0 chr1 63508290 63508491 -179155862 - MIR SINE MIR -6 256 49 189 0 0 0 chr1 63509045 63509066 -179155287 + (T)n Simple_repeat Simple_repeat 1 21 0 415 294 17 17 chr1 63509164 63509283 -179155070 - L2 LINE L2 -2 3311 3193 211 271 34 17 chr1 63509317 63509376 -179154977 - MIR3 SINE MIR -36 172 113 1673 16 0 0 chr1 63510013 63510197 -179154156 - AluYa5 SINE Alu -2 309 126 2431 85 0 0 chr1 63510239 63510545 -179153808 + AluSg SINE Alu 1 306 -4 362 309 0 0 chr1 63511088 63511185 -179153168 + MIR SINE MIR 58 154 -108 2303 195 126 47 chr1 63511324 63511904 -179152449 - MLT1E2 LTR MaLR 0 626 1 319 313 32 0 chr1 63511931 63512066 -179152287 + MIR SINE MIR 36 173 -61 292 315 37 19 chr1 63512130 63512238 -179152115 + MIR SINE MIR 147 256 -6 224 286 170 18 chr1 63512322 63512434 -179151919 - MIR SINE MIR -98 164 36 564 233 138 32 chr1 63513622 63513811 -179150542 + MER3 DNA MER1_type 1 209 0 209 343 0 0 chr1 63514456 63514526 -179149827 - MIR SINE MIR -112 150 81 680 181 133 6 chr1 63514903 63515069 -179149284 + MER5A DNA MER1_type 1 187 -2 465 66 0 0 chr1 63515594 63515655 -179148698 + (CA)n Simple_repeat Simple_repeat 1 61 0 815 296 54 47 chr1 63515823 63516228 -179148125 + L2 LINE L2 2873 3280 -33 205 314 64 39 chr1 63516284 63516440 -179147913 + L2 LINE L2 2814 2973 -299 182 321 19 0 chr1 63517134 63517187 -179147166 - L2 LINE L2 -14 3258 3205 291 273 73 9 chr1 63517265 63517375 -179146978 - MIR SINE MIR -109 153 37 261 294 29 39 chr1 63517848 63517950 -179146403 + L2 LINE L2 3212 3312 -1 199 170 64 43 chr1 63519734 63519781 -179144572 + L2 LINE L2 3258 3305 -8 305 274 70 102 chr1 63520963 63521120 -179143233 + L2 LINE L2 3121 3272 0 317 288 65 14 chr1 63521472 63521611 -179142742 + MIR SINE MIR 103 248 -14 527 159 0 11 chr1 63521625 63521713 -179142640 + MSTA LTR MaLR 1 87 -341 9090 135 20 55 chr1 63521714 63522047 -179142306 + MSTA-int LTR MaLR 41 384 -1196 5105 62 0 2 chr1 63522047 63522655 -179141698 - L1PA6 LINE L1 -5 6149 5543 9090 135 20 55 chr1 63522655 63523917 -179140436 + MSTA-int LTR MaLR 384 1580 0 1718 194 131 16 chr1 63523919 63524301 -179140052 + MSTA LTR MaLR 3 428 0 1140 244 40 37 chr1 63524362 63524750 -179139603 + MLT1J1 LTR MaLR 1 389 -61 1237 208 69 75 chr1 63524764 63525110 -179139243 + MER2 DNA MER2_type 1 344 0 236 263 184 0 chr1 63526024 63526100 -179138253 - L2 LINE L2 -22 3291 3202 1869 179 0 3 chr1 63526119 63526432 -179137921 - AluJb SINE Alu 0 312 1 202 376 80 8 chr1 63526711 63526836 -179137517 + L2 LINE L2 3127 3260 -12 390 248 59 10 chr1 63526850 63526951 -179137402 - MIR SINE MIR -70 138 33 30 27 0 0 chr1 63527492 63527529 -179136824 + AT_rich Low_complexity Low_complexity 1 37 0 215 333 87 32 chr1 63527596 63527722 -179136631 - MIR SINE MIR -60 148 16 222 37 0 0 chr1 63531609 63531636 -179132717 + (CA)n Simple_repeat Simple_repeat 2 28 0 418 257 0 37 chr1 63531746 63531855 -179132498 + L2 LINE L2 3209 3313 0 1665 179 17 7 chr1 63532140 63532441 -179131912 + AluJb SINE Alu 1 304 -8 296 323 21 0 chr1 63533157 63533250 -179131103 + MIR SINE MIR 41 135 -73 371 208 42 21 chr1 63534191 63534287 -179130066 - MIR SINE MIR -58 204 107 1506 247 112 28 chr1 63534349 63534815 -179129538 - MLT1D LTR MaLR 0 505 1 367 276 31 16 chr1 63534986 63535113 -179129240 - MIR SINE MIR -109 153 25 296 297 53 103 chr1 63535997 63536377 -179127976 - L2 LINE L2 -60 3212 2852 230 322 42 34 chr1 63536895 63537013 -179127340 - L2 LINE L2 -5 3267 3149 385 333 16 50 chr1 63537060 63537318 -179127035 - MIR SINE MIR -12 250 2 424 257 9 9 chr1 63537379 63537488 -179126865 - MIR3 SINE MIR -31 177 69 763 241 119 21 chr1 63537622 63537858 -179126495 + MIR SINE MIR 1 259 -3 241 239 40 108 chr1 63538136 63538312 -179126041 + L2 LINE L2 3098 3261 -52 256 219 31 47 chr1 63538393 63538457 -179125896 + L2 LINE L2 3209 3271 -1 289 263 120 0 chr1 63538469 63538602 -179125751 + MIR SINE MIR 70 218 -44 350 213 149 0 chr1 63538956 63539050 -179125303 - MIR SINE MIR -109 153 46 558 294 5 32 chr1 63539793 63539881 -179124472 + MIR SINE MIR 66 155 -107 2285 94 0 13 chr1 63539881 63540180 -179124173 - AluSx SINE Alu -17 295 1 558 294 5 32 chr1 63540180 63540278 -179124075 + MIR SINE MIR 155 247 -15 286 374 14 27 chr1 63540549 63540696 -179123657 - MIR3 SINE MIR -46 162 18 338 306 56 43 chr1 63540966 63541198 -179123155 - L2 LINE L2 -5 3308 3074 243 333 8 24 chr1 63541283 63541406 -179122947 - MIR SINE MIR -71 191 71 192 138 46 92 chr1 63541686 63541751 -179122602 - MIR SINE MIR -43 219 158 213 344 39 16 chr1 63541786 63541914 -179122439 - MIR3 SINE MIR -64 144 14 202 280 187 0 chr1 63542947 63543022 -179121331 + MIR SINE MIR 66 154 -108 245 351 96 42 chr1 63543048 63543287 -179121066 + L2 LINE L2 2811 3062 -210 221 193 18 18 chr1 63543462 63543519 -179120834 + (TGAA)n Simple_repeat Simple_repeat 3 59 0 1160 225 202 32 chr1 63543729 63544160 -179120193 + MLT1D LTR MaLR 1 504 -1 181 286 79 16 chr1 63544167 63544230 -179120123 - MIR3 SINE MIR -51 157 91 648 284 96 64 chr1 63545557 63546007 -179118346 - LTR33A LTR ERVL -3 520 57 203 337 12 23 chr1 63546128 63546214 -179118139 + MIR SINE MIR 38 122 -86 278 394 62 0 chr1 63546978 63547138 -179117215 - MIR SINE MIR -8 254 85 348 267 144 17 chr1 63547169 63547349 -179117004 - MIR SINE MIR -13 249 47 457 234 90 0 chr1 63547393 63547504 -179116849 - L2 LINE L2 0 3313 3193 215 231 19 0 chr1 63547540 63547592 -179116761 - L2 LINE L2 -10 3262 3210 296 274 29 142 chr1 63548241 63548515 -179115838 - L2 LINE L2 -15 3257 3015 337 329 72 30 chr1 63549246 63549413 -179114940 - MIR SINE MIR -23 239 66 209 221 84 42 chr1 63549465 63549560 -179114793 + MIR SINE MIR 151 249 -13 618 339 11 8 chr1 63549994 63550254 -179114099 + LTR16B LTR ERVL 1 261 -203 414 88 0 0 chr1 63550278 63550346 -179114007 + (CCTG)n Simple_repeat Simple_repeat 2 69 0 261 0 0 0 chr1 63550346 63550375 -179113978 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 374 267 236 12 chr1 63551067 63551228 -179113125 + MIR SINE MIR 64 260 -2 2229 101 0 3 chr1 63551309 63551607 -179112746 - AluSx SINE Alu -15 297 1 21 0 0 0 chr1 63551607 63551628 -179112725 + AT_rich Low_complexity Low_complexity 1 21 0 215 205 0 0 chr1 63551845 63551884 -179112469 + GA-rich Low_complexity Low_complexity 2 40 0 204 349 30 30 chr1 63552622 63552754 -179111599 + L3 LINE CR1 1080 1211 -366 327 331 27 16 chr1 63552754 63552938 -179111415 + L1ME4a LINE L1 5816 6001 -120 370 236 38 19 chr1 63552940 63553046 -179111307 - MER117 DNA MER1_type -85 112 5 218 261 0 0 chr1 63553186 63553232 -179111121 - L2 LINE L2 -9 3304 3259 228 138 46 15 chr1 63553666 63553731 -179110622 + GA-rich Low_complexity Low_complexity 2 68 0 415 274 117 16 chr1 63553923 63554071 -179110282 + MIR SINE MIR 15 176 -32 392 321 80 5 chr1 63554851 63555038 -179109315 + MIR SINE MIR 1 201 -61 314 254 68 25 chr1 63555579 63555697 -179108656 + MIR SINE MIR 119 241 -21 1044 180 21 0 chr1 63555894 63556083 -179108270 + MER2 DNA MER2_type 9 201 -144 21 36 0 0 chr1 63556086 63556114 -179108239 + AT_rich Low_complexity Low_complexity 1 28 0 397 143 26 39 chr1 63556120 63556197 -179108156 + MER2 DNA MER2_type 269 344 -1 711 176 8 0 chr1 63556198 63556323 -179108030 + L1M3 LINE L1 5645 5770 -401 395 265 133 28 chr1 63556755 63556936 -179107417 + MIR SINE MIR 3 202 -60 274 204 56 0 chr1 63557590 63557644 -179106709 - L2 LINE L2 -4 3268 3212 612 340 51 59 chr1 63557808 63558589 -179105764 - L2 LINE L2 -2 3270 2502 2086 122 0 3 chr1 63558644 63558932 -179105421 + AluSx SINE Alu 23 309 -3 209 285 158 42 chr1 63558938 63559103 -179105250 - L2 LINE L2 -254 3018 2835 211 357 56 35 chr1 63559719 63559862 -179104491 + MIR3 SINE MIR 5 150 -58 673 301 5 10 chr1 63560207 63560403 -179103950 - MIR SINE MIR -48 214 20 265 333 37 9 chr1 63560492 63560600 -179103753 + MIR3 SINE MIR 13 123 -85 287 318 19 70 chr1 63561179 63561336 -179103017 - MIR SINE MIR -65 143 17 195 42 0 0 chr1 63561977 63562001 -179102352 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2047 107 4 14 chr1 63562010 63562290 -179102063 - AluSq SINE Alu -36 277 1 484 292 7 19 chr1 63562342 63562496 -179101857 - MIR3 SINE MIR -56 152 1 455 290 147 35 chr1 63563431 63563787 -179100566 + L1M4 LINE L1 3628 3943 -2203 207 0 0 0 chr1 63563787 63563810 -179100543 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1624 187 0 11 chr1 63563810 63564093 -179100260 - AluJo SINE Alu -32 280 1 455 290 147 35 chr1 63564093 63564287 -179100066 + L1M4 LINE L1 3942 4241 -1905 2101 121 0 0 chr1 63564497 63564830 -179099523 - AluSx SINE Alu 0 333 1 195 42 0 0 chr1 63565008 63565032 -179099321 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1571 234 51 11 chr1 63565089 63565439 -179098914 + MLT1A2 LTR MaLR 11 374 0 329 311 39 0 chr1 63565451 63565554 -179098799 + GA-rich Low_complexity Low_complexity 5 111 0 655 291 64 8 chr1 63565560 63565794 -179098559 - MIR SINE MIR -1 261 15 180 296 19 0 chr1 63566758 63566812 -179097541 - L2 LINE L2 -32 3281 3227 947 230 11 0 chr1 63567038 63567225 -179097128 + MER5A DNA MER1_type 1 189 0 190 171 14 171 chr1 63568526 63568596 -179095757 - L2 LINE L2 0 3313 3255 26 0 0 0 chr1 63569355 63569381 -179094972 + AT_rich Low_complexity Low_complexity 1 26 0 220 217 0 22 chr1 63569385 63569431 -179094922 - L2 LINE L2 -5 3267 3223 204 40 0 0 chr1 63569764 63569789 -179094564 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 191 234 0 0 chr1 63569792 63569839 -179094514 - L2 LINE L2 -308 2964 2918 712 255 25 35 chr1 63570079 63570279 -179094074 + MIR SINE MIR 57 254 -8 551 298 25 15 chr1 63571327 63571525 -179092828 - MIR SINE MIR -3 259 60 1902 201 69 10 chr1 63571569 63571973 -179092380 + L1MB5 LINE L1 5740 6167 -7 233 94 0 0 chr1 63572266 63572298 -179092055 + MIR SINE MIR 117 148 -114 3625 268 84 43 chr1 63572364 63574234 -179090119 + L1MC4 LINE L1 5949 7714 -94 279 235 33 71 chr1 63574233 63574431 -179089922 + L1MC4 LINE L1 2007 8322 0 * 26 0 0 0 chr1 63574855 63574881 -179089472 + AT_rich Low_complexity Low_complexity 1 26 0 218 190 52 0 chr1 63576003 63576061 -179088292 + MIR SINE MIR 120 180 -82 322 278 22 70 chr1 63576468 63576611 -179087742 + MIR SINE MIR 2 148 -63 201 255 0 20 chr1 63576698 63576749 -179087604 + CT-rich Low_complexity Low_complexity 2 51 0 286 308 69 15 chr1 63576909 63577039 -179087314 - L2 LINE L2 -4 3309 3173 248 273 106 23 chr1 63577430 63577562 -179086791 + Charlie7 DNA MER1_type 22 164 -2448 180 338 39 39 chr1 63577915 63577992 -179086361 - L2 LINE L2 -10 3262 3186 551 153 147 93 chr1 63579251 63579336 -179085017 - MER5B DNA MER1_type -18 160 62 1040 183 0 18 chr1 63579336 63579505 -179084848 - FRAM SINE Alu 0 166 1 551 153 147 93 chr1 63579505 63579569 -179084784 - MER5B DNA MER1_type -116 62 3 261 321 117 17 chr1 63579569 63579757 -179084596 + MIR SINE MIR 30 241 -21 262 119 0 85 chr1 63579758 63579817 -179084536 + MLT1E2 LTR MaLR 2 55 -571 379 207 0 46 chr1 63579973 63580060 -179084293 + MLT1E2 LTR MaLR 2 84 -542 2122 144 117 52 chr1 63580767 63581169 -179083184 - MSTA LTR MaLR 0 428 1 559 276 75 20 chr1 63581226 63581425 -179082928 + MIR SINE MIR 47 256 -6 968 261 77 59 chr1 63581786 63582281 -179082072 - LTR33 LTR ERVL -12 509 6 2578 65 0 0 chr1 63582425 63582735 -179081618 + AluY SINE Alu 1 310 -1 390 333 60 26 chr1 63582752 63582986 -179081367 - MIR SINE MIR -19 243 2 198 0 0 0 chr1 63583251 63583273 -179081080 + (T)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chr1 63583515 63583543 -179080810 + AT_rich Low_complexity Low_complexity 1 28 0 316 331 16 24 chr1 63585513 63585637 -179078716 - MIR SINE MIR -63 145 23 1504 125 65 0 chr1 63585684 63585900 -179078453 - MER30 DNA MER1_type 0 230 1 308 348 65 3 chr1 63585908 63586045 -179078308 - MIR SINE MIR -62 146 2 956 303 47 29 chr1 63586822 63587208 -179077145 - L2 LINE L2 -109 3204 2812 184 357 48 24 chr1 63587289 63587415 -179076938 + MIR SINE MIR 39 167 -95 202 282 64 0 chr1 63587476 63587554 -179076799 - MIR SINE MIR -71 191 109 634 283 20 0 chr1 63587590 63587742 -179076611 + FRAM SINE Alu 4 158 -18 195 139 0 0 chr1 63587751 63587787 -179076566 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 207 0 0 0 chr1 63588256 63588279 -179076074 + (CA)n Simple_repeat Simple_repeat 1 23 0 186 186 23 0 chr1 63588671 63588714 -179075639 + MIR SINE MIR 99 142 -120 280 298 71 0 chr1 63588939 63589023 -179075330 - MIR3 SINE MIR -13 195 106 282 298 71 0 chr1 63589125 63589209 -179075144 - MIR3 SINE MIR -13 195 106 586 210 0 29 chr1 63590149 63590287 -179074066 + ORSL DNA AcHobo 142 275 0 1779 171 98 0 chr1 63590511 63590816 -179073537 + MLT1A1 LTR MaLR 31 365 0 193 311 57 19 chr1 63591190 63591296 -179073057 + MIR SINE MIR 94 203 -59 789 203 0 0 chr1 63591374 63591507 -179072846 + FLAM_A SINE Alu 1 133 0 431 304 191 18 chr1 63591835 63592170 -179072183 + L2 LINE L2 2921 3313 0 229 296 0 0 chr1 63592170 63592224 -179072129 + (TGGG)n Simple_repeat Simple_repeat 2 55 0 2346 76 0 0 chr1 63592249 63592539 -179071814 - AluY SINE Alu -21 290 1 214 258 219 13 chr1 63592664 63592819 -179071534 - MIR SINE MIR -13 249 63 1890 200 85 83 chr1 63593578 63594169 -179070184 + MLT1E LTR MaLR 1 592 -1 184 265 71 51 chr1 63594212 63594310 -179070043 + L2 LINE L2 3002 3101 -212 516 284 161 0 chr1 63594371 63594526 -179069827 + MER5A DNA MER1_type 9 188 -1 189 0 0 0 chr1 63594893 63594914 -179069439 + (A)n Simple_repeat Simple_repeat 1 21 0 197 282 16 73 chr1 63595207 63595331 -179069022 + L2 LINE L2 2976 3092 -180 207 0 0 0 chr1 63595469 63595492 -179068861 + (A)n Simple_repeat Simple_repeat 1 23 0 402 255 96 25 chr1 63596636 63596918 -179067435 + MSTA LTR MaLR 1 597 -12 841 110 19 58 chr1 63596934 63597089 -179067264 + THE1C LTR MaLR 225 373 -2 901 263 24 32 chr1 63597448 63597699 -179066654 - MIR SINE MIR -12 250 2 373 274 129 0 chr1 63597779 63597903 -179066450 - MIR SINE MIR -121 141 2 287 402 16 5 chr1 63598110 63598299 -179066054 + L2 LINE L2 2154 2344 -970 183 225 0 0 chr1 63598313 63598350 -179066003 - L3 LINE CR1 -5 1572 1536 184 343 15 15 chr1 63598350 63598417 -179065936 + MIR3 SINE MIR 4 70 -138 234 328 31 23 chr1 63598425 63598553 -179065800 + MIR SINE MIR 129 257 -5 933 275 63 39 chr1 63598593 63598957 -179065396 - L3 LINE CR1 -59 1518 1146 484 257 103 0 chr1 63599546 63599682 -179064671 + MER5B DNA MER1_type 5 154 -24 435 182 0 30 chr1 63599748 63599856 -179064497 - MER5A DNA MER1_type -80 109 6 275 296 31 31 chr1 63599980 63600078 -179064275 - L2 LINE L2 -147 3125 3028 200 360 97 18 chr1 63600328 63600442 -179063911 + L2 LINE L2 3149 3271 -1 386 316 101 7 chr1 63602128 63602267 -179062086 + MIR SINE MIR 90 241 -21 223 302 16 0 chr1 63602341 63602404 -179061949 + L2 LINE L2 3149 3212 -60 195 363 50 0 chr1 63602641 63602721 -179061632 + MIR3 SINE MIR 99 182 -26 342 259 98 9 chr1 63602746 63602858 -179061495 - L2 LINE L2 -1 3271 3150 292 244 22 33 chr1 63603184 63603274 -179061079 + MER103 DNA DNA 46 134 -32 1704 164 42 31 chr1 63603277 63603631 -179060722 - MLT1A2 LTR MaLR -1 373 16 1556 202 0 7 chr1 63603669 63603982 -179060371 - AluJb SINE Alu 0 311 1 389 317 21 0 chr1 63605033 63605175 -179059178 + MER117 DNA MER1_type 3 147 -50 265 299 41 68 chr1 63605330 63605477 -179058876 - MIR3 SINE MIR -65 143 1 202 221 74 40 chr1 63605935 63606024 -179058329 - MIR SINE MIR -112 96 20 180 0 0 0 chr1 63606987 63607007 -179057346 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 542 255 46 39 chr1 63607121 63607274 -179057079 + MIR SINE MIR 17 170 -38 368 274 42 0 chr1 63607394 63607489 -179056864 + L2 LINE L2 3158 3256 -16 238 269 75 30 chr1 63607594 63607728 -179056625 + L2 LINE L2 2925 3064 -208 418 289 53 26 chr1 63607983 63608135 -179056218 - MIR SINE MIR -19 243 88 365 284 0 11 chr1 63608161 63608249 -179056104 + MIR SINE MIR 2 88 -174 397 304 95 78 chr1 63608487 63608691 -179055662 + MLT1J LTR MaLR 224 423 -192 186 43 0 0 chr1 63608691 63608714 -179055639 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1944 128 14 14 chr1 63608719 63609000 -179055353 - AluSx SINE Alu -31 281 1 397 304 95 78 chr1 63609000 63609085 -179055268 + MLT1J LTR MaLR 426 602 -13 356 247 60 27 chr1 63609099 63609249 -179055104 + MIR SINE MIR 108 262 0 196 252 93 101 chr1 63609470 63609609 -179054744 - MIR3 SINE MIR -68 140 3 * 540 325 90 31 chr1 63609609 63609962 -179054391 + L2 LINE L2 2868 3241 -72 487 346 40 0 chr1 63610026 63610228 -179054125 + MIR SINE MIR 47 256 -6 587 246 7 0 chr1 63610403 63610545 -179053808 + MIR SINE MIR 120 262 0 338 302 129 52 chr1 63611004 63611236 -179053117 + MIR SINE MIR 8 257 -5 383 264 0 0 chr1 63611269 63611360 -179052993 - MIR SINE MIR -25 237 147 792 232 72 0 chr1 63611377 63611571 -179052782 - MIR SINE MIR -1 261 54 246 199 19 0 chr1 63611625 63611678 -179052675 - MIR SINE MIR -61 147 101 456 283 236 5 chr1 63613257 63613448 -179050905 - MIR SINE MIR -26 236 2 325 252 56 43 chr1 63613563 63613703 -179050650 - MIR SINE MIR -58 150 12 934 280 229 27 chr1 63613840 63614468 -179049885 + L2 LINE L2 2536 3312 -1 392 110 0 41 chr1 63614572 63614645 -179049708 + (TTCCC)n Simple_repeat Simple_repeat 5 74 0 181 119 48 0 chr1 63614667 63614709 -179049644 + CT-rich Low_complexity Low_complexity 1 44 0 1811 184 0 3 chr1 63614722 63615021 -179049332 - AluJb SINE Alu -14 298 1 243 330 121 15 chr1 63615451 63615657 -179048696 + MIR SINE MIR 11 238 -24 274 246 0 0 chr1 63615670 63615727 -179048626 + MIR SINE MIR 93 149 -113 2356 73 3 22 chr1 63615874 63616191 -179048162 - AluY SINE Alu 0 311 1 487 296 34 2 chr1 63617745 63617947 -179046406 - MIR SINE MIR -6 256 10 471 250 138 0 chr1 63618674 63618834 -179045519 - MIR SINE MIR -2 260 79 403 362 75 39 chr1 63618862 63619221 -179045132 + L2 LINE L2 2896 3267 -5 4529 100 145 140 chr1 63619324 63620711 -179043642 - pTR5 LTR ERV1 0 2438 740 707 287 12 24 chr1 63620713 63620964 -179043389 - MIR SINE MIR -13 249 2 367 257 119 40 chr1 63621472 63621698 -179042655 + MIR SINE MIR 19 262 0 298 299 48 48 chr1 63622724 63622871 -179041482 - MIR SINE MIR -111 151 5 276 282 78 88 chr1 63623174 63623458 -179040895 + L2 LINE L2 3033 3313 0 703 281 69 25 chr1 63623607 63623881 -179040472 - L2 LINE L2 0 3313 3028 183 200 0 160 chr1 63624003 63624078 -179040275 + MIR SINE MIR 118 180 -82 239 325 0 0 chr1 63624093 63624176 -179040177 + MIR3 SINE MIR 120 202 -6 306 269 101 25 chr1 63624883 63625002 -179039351 - L2 LINE L2 -8 3264 3137 298 249 121 75 chr1 63625204 63625377 -179038976 - MIR SINE MIR -33 229 49 443 297 31 61 chr1 63626850 63627079 -179037274 - MIR SINE MIR -6 256 35 576 312 73 8 chr1 63627752 63627986 -179036367 - MIR SINE MIR -12 250 2 395 299 37 18 chr1 63628929 63629093 -179035260 + MIR SINE MIR 69 235 -27 516 284 21 0 chr1 63629275 63629416 -179034937 - MIR SINE MIR -80 182 39 1060 179 11 159 chr1 63629465 63629848 -179034505 + MLT2D LTR ERVL 57 369 -45 321 26 0 0 chr1 63629848 63629886 -179034467 + (CA)n Simple_repeat Simple_repeat 1 38 0 1060 179 11 159 chr1 63629886 63629927 -179034426 + MLT2D LTR ERVL 369 414 0 280 313 115 0 chr1 63629978 63630074 -179034279 - L2 LINE L2 -4 3268 3162 211 355 130 41 chr1 63630079 63630248 -179034105 + L2 LINE L2 3085 3268 -4 216 319 0 29 chr1 63630340 63630409 -179033944 - MIR SINE MIR -113 149 83 21 0 0 0 chr1 63630953 63630974 -179033379 + AT_rich Low_complexity Low_complexity 1 21 0 227 206 20 20 chr1 63631882 63631984 -179032369 + CT-rich Low_complexity Low_complexity 3 104 0 644 53 0 11 chr1 63632053 63632147 -179032206 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 387 0 0 0 chr1 63632607 63632650 -179031703 + (CA)n Simple_repeat Simple_repeat 2 44 0 647 263 95 25 chr1 63632655 63632898 -179031455 + L2 LINE L2 3047 3306 -7 295 299 115 25 chr1 63633014 63633171 -179031182 + MIR SINE MIR 92 262 0 641 281 62 6 chr1 63633646 63633824 -179030529 + MIR SINE MIR 65 252 -10 253 246 182 45 chr1 63634019 63634129 -179030224 + MIR SINE MIR 63 187 -75 572 142 121 7 chr1 63634183 63634324 -179030029 - L1 LINE L1 -1650 4496 4340 2384 121 25 6 chr1 63634333 63634689 -179029664 - THE1C LTR MaLR -12 363 1 3130 138 8 0 chr1 63634695 63635189 -179029164 - L1 LINE L1 -1812 4334 3837 * 5612 146 41 10 chr1 63635188 63636948 -179027405 + L1MA8 LINE L1 4472 6286 -5 29 28 0 0 chr1 63636949 63636985 -179027368 + AT_rich Low_complexity Low_complexity 1 36 0 221 346 114 25 chr1 63637619 63637821 -179026532 - L2 LINE L2 0 3272 3053 301 259 44 102 chr1 63638316 63638521 -179025832 + MLT1I LTR MaLR 110 302 -107 436 318 35 6 chr1 63638891 63639061 -179025292 + MIR SINE MIR 88 262 0 1684 190 123 3 chr1 63639195 63639521 -179024832 + MLT1A1 LTR MaLR 1 365 0 191 167 0 21 chr1 63639533 63639581 -179024772 + (CA)n Simple_repeat Simple_repeat 2 48 0 575 179 106 0 chr1 63640229 63640352 -179024001 + MIR SINE MIR 119 254 -8 249 305 24 12 chr1 63640357 63640439 -179023914 - MIR SINE MIR -60 148 66 328 258 132 54 chr1 63641082 63641249 -179023104 + MIR3 SINE MIR 1 180 -28 313 276 160 4 chr1 63641317 63641542 -179022811 + L1ME3 LINE L1 5688 5947 -215 204 40 0 0 chr1 63641569 63641594 -179022759 + (TA)n Simple_repeat Simple_repeat 1 25 0 201 162 27 14 chr1 63641796 63641870 -179022483 + (TA)n Simple_repeat Simple_repeat 2 76 0 516 127 50 0 chr1 63641906 63642129 -179022224 + (TA)n Simple_repeat Simple_repeat 1 234 0 203 321 46 53 chr1 63642442 63642573 -179021780 - MIR SINE MIR -98 164 35 255 297 0 0 chr1 63643257 63643321 -179021032 + L2 LINE L2 3207 3270 -2 909 277 35 23 chr1 63643328 63643584 -179020769 - MIR SINE MIR -2 260 2 1652 186 31 0 chr1 63643651 63643770 -179020583 + AluJb SINE Alu 1 115 -197 612 0 0 0 chr1 63643770 63643838 -179020515 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 1652 186 31 0 chr1 63643838 63644008 -179020345 + AluJb SINE Alu 115 299 -13 248 315 41 0 chr1 63644164 63644237 -179020116 + MIR SINE MIR 112 187 -75 5152 201 44 33 chr1 63644313 63645494 -179018859 + MER52A LTR ERV1 3 1196 -559 350 206 0 14 chr1 63645484 63645557 -179018796 + MER52A LTR ERV1 1682 1753 -2 * 191 300 133 25 chr1 63645789 63645909 -179018444 + MIR SINE MIR 2 134 -128 198 217 50 67 chr1 63646383 63646443 -179017910 + MIR SINE MIR 22 80 -182 336 274 163 35 chr1 63646619 63646981 -179017372 + L2 LINE L2 2872 3311 -2 311 358 16 27 chr1 63647023 63647210 -179017143 + MIR3 SINE MIR 10 194 -14 247 260 0 41 chr1 63647272 63647345 -179017008 + GA-rich Low_complexity Low_complexity 1 70 0 234 297 40 27 chr1 63647346 63647420 -179016933 + MIR3 SINE MIR 84 158 -50 291 256 152 0 chr1 63648265 63648390 -179015963 - L2 LINE L2 -2 3311 3168 1147 168 112 0 chr1 63648499 63648696 -179015657 + MER20 DNA MER1_type 1 219 0 1854 145 0 46 chr1 63649613 63649937 -179014416 + AluJo SINE Alu 3 311 -1 399 298 50 8 chr1 63651409 63651530 -179012823 - MER5B DNA MER1_type -2 176 51 373 310 92 11 chr1 63651970 63652154 -179012199 - MIR SINE MIR -48 214 16 359 282 15 33 chr1 63652157 63652361 -179011992 - MIR SINE MIR -1 261 13 306 279 0 0 chr1 63652500 63652568 -179011785 + L2 LINE L2 3234 3301 -12 553 233 8 8 chr1 63653181 63653301 -179011052 + L2 LINE L2 3193 3312 -1 368 291 158 8 chr1 63653312 63653439 -179010914 + L2 LINE L2 3127 3272 0 2316 111 0 3 chr1 63653706 63654013 -179010340 + AluSx SINE Alu 3 308 -4 543 294 22 16 chr1 63654049 63654233 -179010120 + MER5A DNA MER1_type 2 186 -3 1230 262 85 25 chr1 63654414 63654898 -179009455 - LTR33 LTR ERVL -8 513 1 215 319 0 29 chr1 63655664 63655733 -179008620 + MIR3 SINE MIR 9 75 -133 542 271 175 7 chr1 63656549 63656745 -179007608 + MIR SINE MIR 42 262 0 458 232 152 7 chr1 63656796 63656934 -179007419 - MIR SINE MIR 0 262 105 258 176 0 0 chr1 63657256 63657307 -179007046 + (ATG)n Simple_repeat Simple_repeat 3 53 0 228 263 146 23 chr1 63658949 63659087 -179005266 + MIR SINE MIR 31 182 -62 329 254 116 60 chr1 63659098 63659132 -179005221 - L2 LINE L2 0 3313 3282 1792 226 72 33 chr1 63659132 63659615 -179004738 - MLT1D LTR MaLR 0 505 4 329 254 116 60 chr1 63659615 63659929 -179004424 - L2 LINE L2 -31 3282 807 4997 172 45 20 chr1 63660244 63661623 -179002730 + L1MB2 LINE L1 4756 6169 -2 378 293 114 12 chr1 63662177 63662344 -179002009 - L2 LINE L2 0 3272 3089 471 326 64 17 chr1 63662652 63662888 -179001465 + MIR SINE MIR 4 250 -12 280 291 51 13 chr1 63662929 63663008 -179001345 - L2 LINE L2 -44 3269 3188 198 0 0 0 chr1 63663084 63663106 -179001247 + (A)n Simple_repeat Simple_repeat 1 22 0 439 270 9 18 chr1 63663254 63663365 -179000988 - MIR3 SINE MIR -13 195 86 309 51 0 0 chr1 63663445 63663484 -179000869 + (TG)n Simple_repeat Simple_repeat 2 40 0 636 282 64 9 chr1 63663789 63664009 -179000344 + MIR SINE MIR 16 247 -15 2210 133 0 0 chr1 63664260 63664569 -178999784 + AluSg SINE Alu 1 309 -1 216 182 0 0 chr1 63666349 63666393 -178997960 + GA-rich Low_complexity Low_complexity 2 45 0 335 316 72 6 chr1 63666640 63666778 -178997575 - MIR SINE MIR -62 146 4 432 288 77 29 chr1 63666935 63667105 -178997248 + MIR SINE MIR 20 197 -65 231 251 108 5 chr1 63667744 63667856 -178996497 - MIR3 SINE MIR -119 89 3 300 27 0 0 chr1 63668484 63668521 -178995832 + (CA)n Simple_repeat Simple_repeat 2 38 0 1987 121 11 4 chr1 63668801 63669107 -178995246 + AluSg SINE Alu 1 308 0 276 356 150 30 chr1 63669149 63669542 -178994811 - L2 LINE L2 -1 3271 2832 196 387 0 11 chr1 63669637 63669730 -178994623 + MIR SINE MIR 1 92 -170 676 65 11 0 chr1 63669742 63669835 -178994518 - L1MA8 LINE L1 -4 6287 6194 414 171 95 29 chr1 63669843 63669948 -178994405 + MIR SINE MIR 81 192 -70 1321 157 146 19 chr1 63670120 63670381 -178993972 + AluJb SINE Alu 1 294 -18 1088 200 47 19 chr1 63670398 63670613 -178993740 + MER58A DNA MER1_type 4 224 0 451 173 127 0 chr1 63671432 63671542 -178992811 + MER103 DNA DNA 36 159 -7 2131 123 0 3 chr1 63671734 63672035 -178992318 - AluSx SINE Alu -12 300 1 246 314 105 0 chr1 63672180 63672285 -178992068 - MIR SINE MIR -6 256 141 760 194 106 50 chr1 63672285 63672465 -178991888 + MER3 DNA MER1_type 20 209 0 203 61 30 0 chr1 63673025 63673058 -178991295 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 630 246 42 30 chr1 63673245 63673412 -178990941 + MIR SINE MIR 8 176 -86 268 294 267 30 chr1 63673698 63674001 -178990352 - L3 LINE CR1 -5 1572 1198 266 358 44 0 chr1 63674139 63674276 -178990077 - L2 LINE L2 -7 3265 3123 323 337 107 0 chr1 63674527 63674705 -178989648 - L3 LINE CR1 -744 833 637 251 362 54 29 chr1 63674782 63675061 -178989292 - L2 LINE L2 -2 3270 2985 299 343 29 36 chr1 63675850 63675990 -178988363 + L2 LINE L2 3128 3266 -6 512 200 0 0 chr1 63676310 63676400 -178987953 - MIR SINE MIR -61 147 58 475 291 55 20 chr1 63678254 63678453 -178985900 - MIR3 SINE MIR -2 206 1 1292 268 101 33 chr1 63679693 63680179 -178984174 + MLT1K LTR MaLR 59 577 -11 1004 175 36 21 chr1 63680424 63680618 -178983735 - MER3 DNA MER1_type -4 205 9 253 335 66 0 chr1 63680965 63681117 -178983236 - MIR SINE MIR -1 261 100 397 281 221 17 chr1 63682167 63682402 -178981951 + MER102a DNA MER1_type 39 321 -9 222 289 26 13 chr1 63682807 63682883 -178981470 + L2 LINE L2 3160 3236 -36 182 114 0 45 chr1 63683240 63683284 -178981069 + (CAT)n Simple_repeat Simple_repeat 1 42 0 373 282 173 0 chr1 63684182 63684338 -178980015 - MIR SINE MIR -26 236 54 243 282 32 57 chr1 63684326 63684420 -178979933 + MIR SINE MIR 117 209 -53 * 273 29 0 0 chr1 63684420 63684454 -178979899 + (TG)n Simple_repeat Simple_repeat 2 35 0 243 282 32 57 chr1 63684454 63684483 -178979870 + MIR SINE MIR 209 237 -25 229 257 40 89 chr1 63684630 63684731 -178979622 + MIR SINE MIR 57 152 -56 1143 221 52 43 chr1 63684865 63685190 -178979163 - MER46C DNA MER2_type -2 336 9 542 264 66 74 chr1 63685444 63685686 -178978667 + LTR33A LTR ERVL 3 242 -281 300 254 105 9 chr1 63685859 63685973 -178978380 + LTR33A LTR ERVL 348 472 -51 2330 105 0 0 chr1 63686168 63686473 -178977880 + AluSg SINE Alu 1 305 -5 266 213 0 16 chr1 63686726 63686787 -178977566 + GA-rich Low_complexity Low_complexity 3 62 0 272 268 130 16 chr1 63687891 63688014 -178976339 + MIR3 SINE MIR 9 145 -63 14693 126 23 31 chr1 63688509 63690099 -178974254 + Tigger1 DNA MER2_type 1 1568 -850 2342 83 0 10 chr1 63690099 63690401 -178973952 + AluY SINE Alu 1 299 -12 14693 126 23 31 chr1 63690401 63691246 -178973107 + Tigger1 DNA MER2_type 1568 2418 0 461 249 51 36 chr1 63691360 63691694 -178972659 + L1M4 LINE L1 4357 4695 -1451 383 56 19 0 chr1 63691873 63691927 -178972426 + (CA)n Simple_repeat Simple_repeat 1 55 0 401 227 28 57 chr1 63691932 63692108 -178972245 + L1M4 LINE L1 4995 5165 -981 200 222 0 37 chr1 63693397 63693451 -178970902 - L2 LINE L2 0 3313 3262 836 85 78 0 chr1 63693881 63694010 -178970343 + MER85 DNA T2_type 1 139 0 331 324 116 68 chr1 63694477 63694813 -178969540 + L2 LINE L2 2916 3267 -5 219 292 11 0 chr1 63694923 63695012 -178969341 + GA-rich Low_complexity Low_complexity 3 92 0 27 0 0 0 chr1 63695377 63695404 -178968949 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr1 63696122 63696144 -178968209 + AT_rich Low_complexity Low_complexity 1 22 0 781 223 86 45 chr1 63696302 63696522 -178967831 - MIR SINE MIR -30 232 4 1027 265 27 12 chr1 63696905 63697162 -178967191 + MIR SINE MIR 2 262 0 196 317 79 40 chr1 63697177 63697278 -178967075 - MIR SINE MIR -157 105 1 257 239 134 30 chr1 63697293 63697427 -178966926 - MIR SINE MIR -12 250 103 21 0 0 0 chr1 63700537 63700558 -178963795 + GC_rich Low_complexity Low_complexity 1 21 0 50 0 0 0 chr1 63701370 63701420 -178962933 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 63701438 63701461 -178962892 + GC_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr1 63701566 63701595 -178962758 + (CGAG)n Simple_repeat Simple_repeat 2 30 0 433 276 9 0 chr1 63703834 63703950 -178960403 - MIR SINE MIR 0 262 146 286 318 46 69 chr1 63703992 63704108 -178960245 + MIR SINE MIR 88 200 -62 2418 45 3 0 chr1 63704108 63704395 -178959958 - AluY SINE Alu -23 288 1 286 318 46 69 chr1 63704395 63704451 -178959902 + MIR SINE MIR 200 256 -6 411 317 21 42 chr1 63704477 63704619 -178959734 - L2 LINE L2 -1 3271 3133 4650 140 6 33 chr1 63704919 63705118 -178959235 - L1MA9 LINE L1 0 6312 6109 2260 105 0 0 chr1 63705118 63705413 -178958940 + AluSq SINE Alu 1 295 -18 4650 140 6 33 chr1 63705413 63706072 -178958281 - L1MA9 LINE L1 -203 6109 5477 1284 207 7 28 chr1 63706127 63706417 -178957936 - AluJo SINE Alu 0 312 29 4619 196 9 9 chr1 63706417 63707490 -178956863 - L1MA9 LINE L1 -743 5403 4378 2316 29 7 7 chr1 63707609 63707884 -178956469 - AluY SINE Alu -14 297 23 442 326 100 53 chr1 63708066 63708367 -178955986 - L2 LINE L2 -2 3270 2956 243 103 0 0 chr1 63708368 63708407 -178955946 + (A)n Simple_repeat Simple_repeat 1 39 0 2220 112 14 0 chr1 63709072 63709366 -178954987 + AluSg SINE Alu 1 298 -12 228 291 81 54 chr1 63709480 63709628 -178954725 + MLT1K LTR MaLR 11 162 -426 424 326 62 43 chr1 63709690 63709966 -178954387 + MLT1K LTR MaLR 267 547 -41 211 328 60 0 chr1 63710322 63710389 -178953964 - MIR SINE MIR -64 144 74 2360 240 70 19 chr1 63710432 63712010 -178952343 + L1ME2 LINE L1 4416 6078 -86 6176 119 51 42 chr1 63712016 63712484 -178951869 - Tigger3b DNA MER2_type -1797 1231 769 2206 132 0 0 chr1 63712484 63712794 -178951559 - AluSx SINE Alu -2 310 1 6176 119 51 42 chr1 63712794 63713350 -178951003 - Tigger3b DNA MER2_type -2259 769 192 2382 103 0 0 chr1 63713350 63713662 -178950691 - AluSx SINE Alu 0 312 1 6176 119 51 42 chr1 63713662 63713810 -178950543 - Tigger3b DNA MER2_type -2836 192 47 244 304 18 116 chr1 63714113 63714192 -178950161 + L3 LINE CR1 1372 1457 -120 2375 74 3 29 chr1 63714192 63714504 -178949849 + AluY SINE Alu 1 304 -7 244 304 18 116 chr1 63714504 63714648 -178949705 + L3 LINE CR1 1457 1573 -4 27 0 0 0 chr1 63714845 63714872 -178949481 + AT_rich Low_complexity Low_complexity 1 27 0 445 231 116 54 chr1 63715348 63715495 -178948858 + MIR3 SINE MIR 34 189 -19 364 198 0 135 chr1 63715962 63716088 -178948265 - MIR SINE MIR -70 192 84 210 167 62 0 chr1 63716237 63716285 -178948068 + MIR SINE MIR 111 161 -101 622 330 74 28 chr1 63716407 63716840 -178947513 + MLT1K LTR MaLR 118 570 -18 2572 52 7 0 chr1 63716866 63717174 -178947179 - AluY SINE Alu -1 310 1 230 219 16 0 chr1 63717966 63718030 -178946323 + GA-rich Low_complexity Low_complexity 4 68 0 576 247 77 18 chr1 63718170 63718340 -178946013 + MIR SINE MIR 41 220 -42 262 271 0 15 chr1 63718533 63718610 -178945743 - MIR SINE MIR -67 141 65 2292 95 20 0 chr1 63718663 63718967 -178945386 + AluSq SINE Alu 1 310 -3 232 287 37 103 chr1 63719078 63719214 -178945139 - L2 LINE L2 -86 3186 3060 1264 85 0 17 chr1 63719846 63720022 -178944331 + L1PA10 LINE L1 5995 6167 -1 499 259 37 9 chr1 63720662 63720770 -178943583 + MER91A DNA MER1_type 57 167 -29 348 253 30 0 chr1 63720781 63720879 -178943474 + MER91 DNA MER1_type 90 188 -2 * 372 324 83 14 chr1 63720879 63721020 -178943333 - MIR SINE MIR -58 204 54 367 269 94 35 chr1 63721131 63721302 -178943051 + MIR3 SINE MIR 3 183 -25 323 250 30 38 chr1 63721388 63721520 -178942833 + L1ME4a LINE L1 5568 5698 -423 268 188 98 54 chr1 63722019 63722131 -178942222 - L1ME LINE L1 -369 5752 5636 457 246 156 57 chr1 63722402 63722646 -178941707 + L1ME4a LINE L1 5731 5998 -123 511 316 41 6 chr1 63724457 63724628 -178939725 + L3 LINE CR1 1173 1349 -228 321 309 32 11 chr1 63724660 63724754 -178939599 + L2 LINE L2 3215 3310 -3 311 319 34 17 chr1 63724783 63724902 -178939451 + L3 LINE CR1 1449 1569 -8 211 269 104 0 chr1 63724992 63725059 -178939294 + MIR SINE MIR 36 109 -99 277 356 34 7 chr1 63725099 63725245 -178939108 + L2 LINE L2 2596 2745 -569 336 127 84 14 chr1 63725349 63725420 -178938933 + MIR SINE MIR 114 189 -73 278 313 153 65 chr1 63725470 63725934 -178938419 + L2 LINE L2 2808 3312 -1 2950 103 0 0 chr1 63726062 63726480 -178937873 - L1PA14 LINE L1 -16 6145 5728 476 227 23 11 chr1 63727626 63727802 -178936551 + CT-rich Low_complexity Low_complexity 2 179 0 278 200 160 67 chr1 63727807 63727882 -178936471 - L2 LINE L2 -17 3255 3174 208 163 23 0 chr1 63728026 63728069 -178936284 + (CCA)n Simple_repeat Simple_repeat 3 46 0 310 259 0 0 chr1 63728137 63728195 -178936158 + MIR SINE MIR 78 135 -73 469 222 34 0 chr1 63728366 63728483 -178935870 + FRAM SINE Alu 47 167 -9 188 273 91 61 chr1 63729295 63729394 -178934959 + MIR SINE MIR 23 124 -138 189 342 51 0 chr1 63730154 63730233 -178934120 - MIR SINE MIR -150 112 30 357 318 23 15 chr1 63730638 63730770 -178933583 + L2 LINE L2 3180 3312 -1 1777 180 14 3 chr1 63730970 63731265 -178933088 + AluJo SINE Alu 1 298 -14 306 87 0 0 chr1 63731830 63731876 -178932477 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr1 63732645 63732666 -178931687 + AT_rich Low_complexity Low_complexity 1 21 0 210 353 53 21 chr1 63732836 63733023 -178931330 - L2 LINE L2 -420 2894 2702 270 289 94 39 chr1 63733777 63733905 -178930448 + L2 LINE L2 3137 3271 -1 480 200 79 7 chr1 63734063 63734203 -178930150 - L1MB8 LINE L1 -124 6054 5905 2392 80 3 3 chr1 63734289 63734591 -178929762 - AluSp SINE Alu -11 302 1 251 324 27 9 chr1 63735515 63735626 -178928727 + MIR3 SINE MIR 66 178 -30 29 28 0 0 chr1 63735713 63735749 -178928604 + AT_rich Low_complexity Low_complexity 1 36 0 625 187 33 43 chr1 63736105 63736288 -178928065 - MLT1D LTR MaLR -256 211 32 637 324 83 69 chr1 63736347 63737109 -178927244 - L2 LINE L2 -98 3215 2443 241 302 88 68 chr1 63737172 63737364 -178926989 - L2 LINE L2 -190 3082 2887 245 224 112 51 chr1 63738595 63738693 -178925660 - MIR SINE MIR -106 156 53 2669 82 30 25 chr1 63738704 63739107 -178925246 + L1P4 LINE L1 5373 5777 -389 1752 176 16 3 chr1 63739114 63739483 -178924870 + AluJb SINE Alu 1 373 0 1842 195 28 20 chr1 63739486 63739881 -178924472 + L1PA16 LINE L1 5769 6166 0 239 190 17 0 chr1 63740158 63740216 -178924137 + CT-rich Low_complexity Low_complexity 3 61 0 1760 41 5 0 chr1 63790627 63790848 -178873505 - L1PA5 LINE L1 -9 6145 5924 2327 89 0 29 chr1 63791298 63791614 -178872739 - AluSg SINE Alu -3 307 1 208 98 49 0 chr1 63792149 63792190 -178872163 + (TA)n Simple_repeat Simple_repeat 1 43 0 1030 239 76 94 chr1 63792198 63792586 -178871767 - MLT1G1 LTR MaLR 0 595 220 2611 30 3 0 chr1 63792586 63792888 -178871465 + AluY SINE Alu 1 303 -8 1030 239 76 94 chr1 63792888 63793105 -178871248 - MLT1G1 LTR MaLR -375 220 1 2221 131 0 0 chr1 63793201 63793499 -178870854 - AluSx SINE Alu -14 298 1 314 250 60 0 chr1 63793512 63793596 -178870757 - MIR SINE MIR -76 186 98 614 267 13 7 chr1 63793805 63793955 -178870398 + MER5B DNA MER1_type 2 152 -26 2243 100 0 0 chr1 63794264 63794545 -178869808 + AluSx SINE Alu 16 296 -16 26 0 0 0 chr1 63794758 63794784 -178869569 + AT_rich Low_complexity Low_complexity 1 26 0 261 57 0 0 chr1 63795192 63795227 -178869126 + (A)n Simple_repeat Simple_repeat 1 35 0 376 259 17 52 chr1 63795466 63795582 -178868771 - MIR SINE MIR -67 195 84 309 239 282 0 chr1 63795735 63795852 -178868501 + L1ME4a LINE L1 5848 5997 -124 2278 125 36 22 chr1 63795933 63796292 -178868061 + THE1B LTR MaLR 1 364 0 457 122 0 0 chr1 63796321 63796395 -178867958 - AluJ/FRAM SINE Alu -8 304 231 723 282 207 46 chr1 63796544 63797537 -178866816 - L2 LINE L2 -34 3279 2077 303 303 49 25 chr1 63797639 63797801 -178866552 + MIR SINE MIR 1 166 -96 521 288 67 62 chr1 63797978 63798205 -178866148 + MIR SINE MIR 24 250 -12 331 306 99 30 chr1 63798269 63798501 -178865852 + MIR SINE MIR 2 249 -13 383 82 0 0 chr1 63799607 63799668 -178864685 + L1MA1 LINE L1 6242 6302 0 1338 146 0 0 chr1 63800418 63800631 -178863722 + Tigger3(Golem) DNA MER2_type 2817 3029 0 301 298 15 0 chr1 63800650 63800781 -178863572 - L1ME LINE L1 -302 5819 5687 2233 90 7 3 chr1 63800930 63801231 -178863122 + AluY SINE Alu 1 302 -9 2090 103 4 0 chr1 63801240 63801513 -178862840 + AluSp SINE Alu 38 311 -2 278 317 96 3 chr1 63801574 63801701 -178862652 + MIR SINE MIR 56 190 -64 253 295 54 7 chr1 63801818 63801938 -178862415 + MIR SINE MIR 43 165 -86 1798 186 5 47 chr1 63802666 63803047 -178861306 + MLT1A1 LTR MaLR 1 365 0 24 32 0 0 chr1 63803184 63803215 -178861138 + AT_rich Low_complexity Low_complexity 1 31 0 244 291 60 35 chr1 63803802 63803947 -178860406 + MIR SINE MIR 17 154 -62 2351 67 7 7 chr1 63803955 63804254 -178860099 + AluY SINE Alu 1 299 -12 263 365 34 20 chr1 63804649 63804797 -178859556 - L2 LINE L2 -219 3053 2904 390 297 0 43 chr1 63805044 63805182 -178859171 + MIR SINE MIR 21 152 -110 579 168 99 43 chr1 63805260 63805421 -178858932 + MER3 DNA MER1_type 6 128 -81 491 272 26 138 chr1 63805576 63805925 -178858428 + L2 LINE L2 2870 3257 -15 249 33 0 0 chr1 63805925 63805955 -178858398 + (TG)n Simple_repeat Simple_repeat 1 30 0 2267 152 73 11 chr1 63805955 63806409 -178857944 - L1MB3 LINE L1 -14 6169 5688 491 272 26 138 chr1 63806409 63806477 -178857876 + L2 LINE L2 3167 3241 -31 234 0 0 0 chr1 63806571 63806597 -178857756 + (CA)n Simple_repeat Simple_repeat 1 26 0 339 327 196 14 chr1 63807750 63807964 -178856389 + L3 LINE CR1 697 949 -628 356 217 47 23 chr1 63808042 63808171 -178856182 - HsTC2 DNA Tc2 -35 1863 1732 1163 242 46 3 chr1 63808186 63808492 -178855861 - HsTC2 DNA Tc2 -1579 319 1 227 324 20 78 chr1 63808492 63808594 -178855759 + L3 LINE CR1 1004 1099 -478 256 341 77 0 chr1 63808722 63808813 -178855540 + L2 LINE L2 3197 3294 -19 222 292 205 22 chr1 63809093 63809278 -178855075 + MIR SINE MIR 31 249 -13 2029 126 0 54 chr1 63810434 63810751 -178853602 + AluSx SINE Alu 1 300 -12 223 314 0 0 chr1 63810823 63810893 -178853460 + MIR SINE MIR 156 225 -37 214 281 0 16 chr1 63811119 63811183 -178853170 - MIR SINE MIR -188 74 12 248 276 69 23 chr1 63811230 63811317 -178853036 + L2 LINE L2 3144 3234 -38 252 59 0 0 chr1 63811328 63811362 -178852991 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2274 119 0 3 chr1 63811399 63811710 -178852643 + AluSq SINE Alu 1 310 -3 27 0 0 0 chr1 63811903 63811930 -178852423 + AT_rich Low_complexity Low_complexity 1 27 0 283 339 18 107 chr1 63812050 63812274 -178852079 - L2 LINE L2 -16 3256 3053 813 301 4 13 chr1 63812296 63812535 -178851818 + MIR SINE MIR 12 248 -14 391 227 25 158 chr1 63812669 63812947 -178851406 + MER112 DNA MER1_type 18 258 -2 207 387 83 24 chr1 63813038 63813206 -178851147 - L2 LINE L2 -460 2854 2677 1819 31 9 0 chr1 63813366 63813590 -178850763 - L1PA5 LINE L1 -5 6149 5924 2327 89 0 29 chr1 63814040 63814356 -178849997 - AluSg SINE Alu -3 307 1 208 98 49 0 chr1 63814891 63814932 -178849421 + (TA)n Simple_repeat Simple_repeat 1 43 0 611 279 114 22 chr1 63814940 63815314 -178849039 - MLT1G1 LTR MaLR 0 595 185 2378 73 0 6 chr1 63815328 63815641 -178848712 + AluY SINE Alu 1 311 0 1139 181 0 0 chr1 63815703 63815902 -178848451 + MLT1B LTR MaLR 192 390 0 1476 253 68 50 chr1 63815918 63816479 -178847874 - L2 LINE L2 -554 2760 2190 252 345 108 39 chr1 63816754 63817160 -178847193 - L2 LINE L2 -35 3237 2804 424 304 89 18 chr1 63817394 63817618 -178846735 + L1ME4a LINE L1 5732 5971 -150 229 323 155 26 chr1 63818215 63818370 -178845983 - L2 LINE L2 -256 3016 2842 238 358 37 0 chr1 63818977 63819111 -178845242 - L2 LINE L2 -558 2756 2618 351 236 87 71 chr1 63819158 63819285 -178845068 - L2 LINE L2 -2 3270 3142 436 303 16 0 chr1 63819652 63819774 -178844579 + MIR3 SINE MIR 77 200 -8 287 218 157 95 chr1 63819888 63820035 -178844318 - MIR SINE MIR -42 220 65 275 213 107 0 chr1 63820593 63820668 -178843685 + MIR SINE MIR 115 197 -65 2117 91 0 21 chr1 63820880 63821167 -178843186 - AluY SINE Alu 0 311 31 371 336 34 0 chr1 63821447 63821566 -178842787 + MIR SINE MIR 46 168 -94 254 196 0 20 chr1 63822428 63822479 -178841874 - L2 LINE L2 -13 3300 3251 241 290 56 14 chr1 63823421 63823565 -178840788 - MIR SINE MIR -65 143 2 317 269 37 139 chr1 63824095 63824330 -178840023 + L2 LINE L2 2940 3141 -172 1566 216 26 22 chr1 63824330 63824746 -178839607 + LTR52 LTR ERVL 1 418 -3 317 269 37 139 chr1 63824746 63824804 -178839549 + L2 LINE L2 3141 3203 -110 628 217 92 55 chr1 63824944 63825165 -178839188 - MIR SINE MIR -28 234 2 245 179 0 0 chr1 63825640 63825696 -178838657 - L1ME4a LINE L1 -6 6115 6060 281 308 53 20 chr1 63825806 63825988 -178838365 + MIR SINE MIR 46 232 -30 257 398 91 22 chr1 63826487 63826718 -178837635 - L2 LINE L2 -80 3192 2946 190 265 44 44 chr1 63827290 63827358 -178836995 - L2 LINE L2 -561 2753 2686 544 300 74 70 chr1 63827362 63827618 -178836735 + HAL1 LINE L1 1 255 -2252 2318 89 0 0 chr1 63827618 63827910 -178836443 + AluSx SINE Alu 1 292 -20 544 300 74 70 chr1 63827910 63828207 -178836146 + HAL1 LINE L1 255 556 -1951 1029 64 7 7 chr1 63828242 63828383 -178835970 - THE1B LTR MaLR 0 364 224 254 54 0 0 chr1 63828383 63828420 -178835933 + HERVL-A2 LTR ERVL 5618 5654 0 2003 172 38 31 chr1 63828420 63828967 -178835386 + MLT2A2 LTR ERVL 1 554 0 1384 264 79 100 chr1 63829183 63829430 -178834923 + HAL1 LINE L1 776 1027 -1480 2140 142 0 10 chr1 63829430 63829741 -178834612 + AluSx SINE Alu 1 308 -4 1384 264 79 100 chr1 63829741 63830187 -178834166 + HAL1 LINE L1 1027 1481 -1026 1272 150 92 116 chr1 63830187 63830646 -178833707 - LTR7 LTR ERV1 -2 448 1 1384 264 79 100 chr1 63830646 63831692 -178832661 + HAL1 LINE L1 1481 2479 -28 2346 93 0 0 chr1 63831726 63832026 -178832327 - AluSg SINE Alu -10 300 1 235 273 0 0 chr1 63832454 63832498 -178831855 - L2 LINE L2 -69 3203 3160 300 327 10 0 chr1 63832745 63832846 -178831507 - MIR SINE MIR -55 207 106 193 359 86 26 chr1 63833242 63833359 -178830994 - MIR3 SINE MIR -82 126 3 1642 257 94 62 chr1 63833725 63834428 -178829925 + L1MEc LINE L1 801 1480 -4735 387 41 0 0 chr1 63834428 63834477 -178829876 + (CA)n Simple_repeat Simple_repeat 2 50 0 1642 257 94 62 chr1 63834477 63835507 -178828846 + L1MEc LINE L1 1480 2541 -3674 225 399 51 6 chr1 63835755 63835913 -178828440 - L2 LINE L2 -22 3250 3086 2410 118 62 21 chr1 63836842 63837274 -178827079 + LTR7 LTR ERV1 1 450 0 1701 173 54 23 chr1 63837508 63837896 -178826457 + MER63B DNA MER1_type 1 400 -36 222 37 0 0 chr1 63838111 63838138 -178826215 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 811 257 22 35 chr1 63838629 63838882 -178825471 - MIR SINE MIR -1 261 14 300 53 0 0 chr1 63839330 63839368 -178824985 + (TA)n Simple_repeat Simple_repeat 1 38 0 975 298 86 33 chr1 63840506 63841142 -178823211 + L2 LINE L2 2639 3313 0 2163 99 27 0 chr1 63841258 63841550 -178822803 - AluSc SINE Alu -9 300 1 204 241 37 0 chr1 63842688 63842742 -178821611 - L2 LINE L2 -33 3239 3184 1034 216 52 11 chr1 63842747 63843015 -178821338 + MER33 DNA MER1_type 46 324 0 358 266 34 62 chr1 63843026 63843203 -178821150 - MER5B DNA MER1_type -3 175 4 288 286 156 26 chr1 63843235 63843277 -178821076 - MER5B DNA MER1_type 0 178 143 180 0 0 0 chr1 63843277 63843297 -178821056 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 288 286 156 26 chr1 63843297 63843408 -178820945 - MER5B DNA MER1_type -35 143 5 181 271 0 0 chr1 63843460 63843508 -178820845 + L2 LINE L2 3179 3226 -87 2297 152 91 0 chr1 63843537 63843933 -178820420 - MSTB1 LTR MaLR 0 432 1 311 238 119 20 chr1 63844473 63844574 -178819779 + MIR SINE MIR 39 149 -59 256 271 14 0 chr1 63844672 63844742 -178819611 - L2 LINE L2 -13 3259 3189 6024 116 3 25 chr1 63845961 63846912 -178817441 + L1MA4A LINE L1 5368 6297 -6 2335 76 13 3 chr1 63846913 63847215 -178817138 - AluY SINE Alu -6 305 1 258 250 15 15 chr1 63847651 63847719 -178816634 - MIR SINE MIR -148 114 47 215 310 0 0 chr1 63847828 63847886 -178816467 - MIR SINE MIR -114 148 91 196 218 161 35 chr1 63848280 63848367 -178815986 - L2 LINE L2 -303 2969 2872 2037 198 116 38 chr1 63848507 63849006 -178815347 + MLT1F LTR MaLR 5 542 0 216 345 35 18 chr1 63849023 63849136 -178815217 - MIR SINE MIR -147 115 1 1613 184 3 35 chr1 63849606 63849922 -178814431 + AluJo SINE Alu 1 306 -6 210 259 35 17 chr1 63850146 63850204 -178814149 - MIR SINE MIR -115 147 89 616 276 89 49 chr1 63850275 63850386 -178813967 + L2 LINE L2 2607 2712 -601 2629 117 8 13 chr1 63850386 63850763 -178813590 + THE1C LTR MaLR 1 375 0 616 276 89 49 chr1 63850763 63851194 -178813159 + L2 LINE L2 2712 3244 -69 554 246 9 9 chr1 63851195 63851309 -178813044 - MER81 DNA DNA 0 114 1 188 298 202 35 chr1 63851559 63851673 -178812680 + L2 LINE L2 3136 3268 -4 306 148 0 0 chr1 63851849 63851903 -178812450 + (TG)n Simple_repeat Simple_repeat 2 55 0 930 232 45 5 chr1 63852190 63852388 -178811965 + MIR SINE MIR 7 212 -50 255 254 36 0 chr1 63852434 63852489 -178811864 + Tigger3(Golem) DNA MER2_type 1 57 -2972 826 178 0 0 chr1 63852500 63852629 -178811724 + Tigger3(Golem) DNA MER2_type 2900 3028 -1 1220 140 153 4 chr1 63853452 63853680 -178810673 + L1MD3 LINE L1 7728 7989 -6 749 293 32 28 chr1 63853934 63854183 -178810170 - MIR SINE MIR -2 260 11 201 286 36 36 chr1 63854503 63854587 -178809766 + L3 LINE CR1 1305 1388 -189 692 262 0 6 chr1 63854603 63854775 -178809578 - MIR SINE MIR -1 261 91 267 326 50 21 chr1 63854827 63854968 -178809385 + L3 LINE CR1 1405 1549 -28 267 295 105 32 chr1 63855030 63855125 -178809228 + L2 LINE L2 3154 3255 -17 286 227 185 17 chr1 63855903 63856022 -178808331 + MIR SINE MIR 110 248 -14 262 263 168 32 chr1 63856090 63856185 -178808168 + L3 LINE CR1 1461 1568 -9 453 289 77 46 chr1 63856651 63856845 -178807508 - MIR SINE MIR -3 259 60 579 329 49 67 chr1 63858065 63858562 -178805791 - L2 LINE L2 -19 3253 2769 1044 102 23 6 chr1 63859110 63859287 -178805066 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 609 179 0 18 chr1 63859366 63859478 -178804875 + FRAM SINE Alu 59 168 -8 292 339 101 20 chr1 63859510 63859955 -178804398 - L2 LINE L2 -1305 2009 1529 457 304 71 33 chr1 63860063 63860247 -178804106 + MIR SINE MIR 56 246 -16 2388 94 0 0 chr1 63860808 63861115 -178803238 - AluSc SINE Alu -2 307 1 297 267 0 0 chr1 63861121 63861196 -178803157 + CT-rich Low_complexity Low_complexity 1 75 0 230 376 64 9 chr1 63861441 63861550 -178802803 - MIR SINE MIR -124 138 24 4252 126 25 6 chr1 63861884 63862805 -178801548 - L1PB1 LINE L1 -320 5831 4885 3116 76 10 0 chr1 63862806 63863202 -178801151 + MLT2A1 LTR ERVL 1 400 -44 213 175 0 0 chr1 63863204 63863244 -178801109 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 393 91 0 0 chr1 63863251 63863306 -178801047 + MLT2A1 LTR ERVL 390 444 0 34959 66 4 14 chr1 63863307 63867717 -178796636 + HERVL-A1 LTR ERVL 2 4366 -1288 12247 72 7 11 chr1 63867865 63868974 -178795379 + HERVL LTR ERVL 3406 4509 -1145 1966 135 16 7 chr1 63868974 63869278 -178795075 + AluSq SINE Alu 1 307 -6 12247 72 7 11 chr1 63869278 63869745 -178794608 + HERVL LTR ERVL 4509 4976 -678 7078 37 0 27 chr1 63869852 63870208 -178794145 + L1PA5 LINE L1 5336 5700 -454 2551 24 7 3 chr1 63870208 63870506 -178793847 + AluY SINE Alu 1 299 -12 7078 37 0 27 chr1 63870506 63870990 -178793363 + L1PA5 LINE L1 5700 6153 -1 2054 40 0 0 chr1 63870990 63871237 -178793116 + HERVL-A1 LTR ERVL 5408 5654 0 3057 106 2 12 chr1 63871237 63871663 -178792690 + MLT2A1 LTR ERVL 1 422 -22 3886 180 5 37 chr1 63871672 63872505 -178791848 - L1PB1 LINE L1 -1258 4888 4083 182 260 27 68 chr1 63872986 63873059 -178791294 + MIR3 SINE MIR 1 70 -138 562 262 81 6 chr1 63873442 63873614 -178790739 + MIR SINE MIR 10 194 -68 1122 214 40 0 chr1 63873647 63873871 -178790482 + MIR SINE MIR 18 250 -12 2485 169 54 5 chr1 63873886 63874294 -178790059 - MSTA LTR MaLR 0 428 1 1761 171 3 16 chr1 63874313 63874623 -178789730 - AluJo SINE Alu -6 306 1 228 300 50 0 chr1 63875038 63875118 -178789235 + L2 LINE L2 3230 3313 0 320 328 162 10 chr1 63875624 63875822 -178788531 - MIR SINE MIR -10 252 25 186 261 22 0 chr1 63876387 63876433 -178787920 + MIR SINE MIR 78 124 -138 262 286 64 57 chr1 63876837 63876977 -178787376 - MIR3 SINE MIR -64 144 4 366 284 150 0 chr1 63876989 63877116 -178787237 - L2 LINE L2 0 3313 3168 529 178 19 28 chr1 63877139 63877246 -178787107 + MLT1C LTR MaLR 3 108 -359 1416 194 67 39 chr1 63877246 63877602 -178786751 + MER47A DNA MER2_type 1 366 0 * 1465 198 77 28 chr1 63877602 63877950 -178786403 + MLT1C LTR MaLR 103 467 0 346 349 55 7 chr1 63878481 63878627 -178785726 - MIR SINE MIR -71 191 39 351 226 164 38 chr1 63878745 63878904 -178785449 - MIR SINE MIR -71 191 13 269 300 33 33 chr1 63878910 63879030 -178785323 - MER5A DNA MER1_type -38 151 32 265 257 54 14 chr1 63879752 63879826 -178784527 + MIR SINE MIR 60 136 -126 304 324 110 40 chr1 63880541 63880714 -178783639 + MIR SINE MIR 28 212 -50 252 243 51 26 chr1 63880835 63880921 -178783432 + MER5A DNA MER1_type 18 115 -74 195 302 70 12 chr1 63880845 63880931 -178783422 - MER5A DNA MER1_type -26 163 73 * 1335 218 21 23 chr1 63881053 63881476 -178782877 - MER74A LTR ERVL -30 528 27 586 298 30 21 chr1 63881522 63881757 -178782596 - L3 LINE CR1 -95 1482 1246 418 303 56 22 chr1 63881986 63882164 -178782189 - MIR SINE MIR -51 211 28 21 0 0 0 chr1 63882563 63882584 -178781769 + AT_rich Low_complexity Low_complexity 1 21 0 431 289 42 7 chr1 63882709 63882851 -178781502 + MIR SINE MIR 57 203 -59 190 132 38 0 chr1 63882911 63882964 -178781389 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 1747 153 53 66 chr1 63883093 63883371 -178780982 - MLT1A2 LTR MaLR -1 373 100 1912 176 39 22 chr1 63883371 63883729 -178780624 - THE1B LTR MaLR 0 364 1 1747 153 53 66 chr1 63883729 63883828 -178780525 - MLT1A2 LTR MaLR -274 100 1 546 286 119 5 chr1 63883983 63884193 -178780160 + MLT1L LTR MaLR 55 288 -327 435 254 43 14 chr1 63884305 63884443 -178779910 + MLT1L LTR MaLR 466 607 -8 207 211 56 122 chr1 63884454 63884508 -178779845 + MIR3 SINE MIR 73 120 -88 2253 101 7 3 chr1 63884508 63884816 -178779537 - AluSc SINE Alu 0 309 1 207 211 56 122 chr1 63884816 63884851 -178779502 + MIR3 SINE MIR 120 156 -52 3087 125 7 0 chr1 63885181 63885612 -178778741 + MER57B LTR ERV1 1 434 0 2342 95 3 0 chr1 63886201 63886507 -178777846 + AluSg SINE Alu 1 307 -3 545 292 20 30 chr1 63886599 63886801 -178777552 + Charlie8 DNA MER1_type 62 261 -2156 263 338 0 0 chr1 63887144 63887218 -178777135 + MIR SINE MIR 76 149 -59 265 309 170 21 chr1 63887466 63887654 -178776699 + L2 LINE L2 2967 3182 -90 235 174 0 43 chr1 63887670 63887739 -178776614 + T-rich Low_complexity Low_complexity 5 70 0 371 287 24 118 chr1 63888209 63888463 -178775890 - L3 LINE CR1 -53 1524 1295 367 278 12 69 chr1 63888585 63888758 -178775595 - MIR SINE MIR -46 216 54 472 298 57 0 chr1 63888905 63889046 -178775307 - MIR SINE MIR -69 193 45 254 200 100 57 chr1 63889955 63890095 -178774258 + L1ME LINE L1 4784 4929 -1217 2097 89 62 7 chr1 63890185 63890477 -178773876 + AluSq SINE Alu 1 308 -5 1977 162 0 0 chr1 63890706 63891008 -178773345 + AluSx SINE Alu 1 302 -10 240 281 114 78 chr1 63891013 63891245 -178773108 + L1ME LINE L1 5353 5575 -546 1618 177 62 80 chr1 63891245 63891529 -178772824 - MLT1B LTR MaLR -4 386 109 2172 108 0 42 chr1 63891529 63891862 -178772491 - AluSc SINE Alu 0 309 1 1618 177 62 80 chr1 63891862 63891967 -178772386 - MLT1B LTR MaLR -281 109 4 432 0 0 0 chr1 63891967 63892015 -178772338 + (CA)n Simple_repeat Simple_repeat 2 49 0 240 281 114 78 chr1 63892015 63892062 -178772291 + L1ME LINE L1 5574 5643 -478 21 0 0 0 chr1 63892219 63892240 -178772113 + AT_rich Low_complexity Low_complexity 1 21 0 448 303 76 24 chr1 63892392 63892603 -178771750 + MIR SINE MIR 28 249 -13 584 296 64 20 chr1 63892738 63892988 -178771365 + MIR SINE MIR 2 262 0 262 152 0 0 chr1 63893813 63893859 -178770494 - L1MB2 LINE L1 0 6171 6126 279 109 0 0 chr1 63893891 63893937 -178770416 + MADE1 DNA Mariner 35 80 0 * 920 266 119 19 chr1 63893937 63894244 -178770109 - MLT1A2 LTR MaLR -35 339 1 2614 154 13 22 chr1 63894247 63894709 -178769644 - L1MB3 LINE L1 -43 6140 5683 376 271 16 23 chr1 63894739 63894868 -178769485 + L1MA10 LINE L1 6206 6333 -1 251 298 92 88 chr1 63894936 63895164 -178769189 - MLT1K LTR MaLR -136 452 224 2378 60 0 0 chr1 63895926 63896241 -178768112 - AluY SINE Alu 0 315 1 38 105 0 0 chr1 63896407 63896550 -178767803 + AT_rich Low_complexity Low_complexity 1 143 0 328 304 0 49 chr1 63896730 63896832 -178767521 - MIR SINE MIR -86 122 26 2588 126 47 33 chr1 63896836 63897258 -178767095 + MSTA LTR MaLR 1 428 0 275 269 15 0 chr1 63897508 63897575 -178766778 + L2 LINE L2 2985 3052 -220 215 230 58 23 chr1 63897799 63897886 -178766467 + L2 LINE L2 3152 3241 -31 269 258 67 92 chr1 63897965 63898085 -178766268 + L2 LINE L2 3156 3272 0 2518 74 0 0 chr1 63899204 63899513 -178764840 - AluY SINE Alu -2 309 1 191 206 0 0 chr1 63899516 63899550 -178764803 - MER5A DNA MER1_type -117 72 39 632 297 6 11 chr1 63899570 63899752 -178764601 + MIR SINE MIR 57 237 -25 199 247 55 27 chr1 63900498 63900571 -178763782 - MIR3 SINE MIR -133 75 1 443 267 45 40 chr1 63900726 63900902 -178763451 + MIR SINE MIR 49 225 -37 451 275 36 123 chr1 63901225 63901534 -178762819 + L2 LINE L2 2986 3267 -5 1747 118 20 82 chr1 63902717 63903022 -178761331 + AluSx SINE Alu 1 286 -26 189 313 6 104 chr1 63903220 63903383 -178760970 - L2 LINE L2 -1 3271 3125 278 264 56 56 chr1 63903955 63904080 -178760273 - LTR67 LTR ERVL -1 556 432 1897 85 4 4 chr1 63904437 63904683 -178759670 - AluSp SINE Alu -52 261 16 211 274 170 28 chr1 63905599 63905705 -178758648 + MIR SINE MIR 21 141 -67 366 304 76 29 chr1 63905915 63906086 -178758267 + MLT1G LTR MaLR 412 590 0 21 0 0 0 chr1 63906397 63906418 -178757935 + AT_rich Low_complexity Low_complexity 1 21 0 279 237 153 42 chr1 63906659 63906777 -178757576 + L2 LINE L2 3137 3267 -5 437 63 66 45 chr1 63907802 63908137 -178756216 + (TA)n Simple_repeat Simple_repeat 1 342 0 244 171 40 26 chr1 63908145 63908221 -178756132 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 1912 113 18 14 chr1 63908232 63908514 -178755839 - AluSq SINE Alu -30 283 1 267 283 126 0 chr1 63908538 63908697 -178755656 - MER112 DNA MER1_type -37 223 45 251 236 22 45 chr1 63908814 63908903 -178755450 + L2 LINE L2 2336 2422 -892 195 130 56 19 chr1 63909558 63909612 -178754741 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 217 143 0 0 chr1 63909715 63909750 -178754603 + MIR3 SINE MIR 167 201 -7 565 342 29 8 chr1 63910008 63910248 -178754105 - MIR SINE MIR -16 246 2 230 187 66 18 chr1 63910277 63910361 -178753992 + MIR SINE MIR 98 183 -61 2149 163 9 9 chr1 63910603 63910946 -178753407 - MER2 DNA MER2_type 0 344 2 201 241 184 0 chr1 63911030 63911117 -178753236 + MIR SINE MIR 114 216 -46 643 285 115 4 chr1 63911719 63911954 -178752399 - MIR SINE MIR 0 262 2 2051 115 104 23 chr1 63911958 63912305 -178752048 - THE1C LTR MaLR 0 375 1 702 308 151 37 chr1 63913005 63913620 -178750733 + L2 LINE L2 2461 3005 -308 360 64 0 0 chr1 63913620 63913667 -178750686 + (TG)n Simple_repeat Simple_repeat 2 48 0 702 308 151 37 chr1 63913667 63913693 -178750660 + L2 LINE L2 3005 3027 -286 2559 182 23 45 chr1 63913693 63914209 -178750144 + MLT1D LTR MaLR 1 505 0 702 308 151 37 chr1 63914209 63914325 -178750028 + L2 LINE L2 3027 3313 0 254 309 91 27 chr1 63914338 63914448 -178749905 + L2 LINE L2 3124 3240 -32 294 304 99 17 chr1 63915211 63915397 -178748956 + MIR SINE MIR 6 206 -56 899 242 37 30 chr1 63915423 63915692 -178748661 - MER102b DNA MER1_type -1 340 70 2455 74 3 3 chr1 63916285 63916594 -178747759 - AluY SINE Alu -2 309 1 1054 253 146 31 chr1 63916599 63917018 -178747335 + MLT1J LTR MaLR 43 509 -2 645 306 182 28 chr1 63917495 63917923 -178746430 + L2 LINE L2 2818 3311 -2 195 143 29 0 chr1 63918406 63918441 -178745912 + MIR SINE MIR 110 145 -63 984 248 158 22 chr1 63918508 63918908 -178745445 + LTR16A1 LTR ERVL 2 455 -2 311 301 27 14 chr1 63918913 63919059 -178745294 - MER117 DNA MER1_type -49 148 1 228 186 0 0 chr1 63919061 63919104 -178745249 + MIR3 SINE MIR 155 197 -11 2172 115 20 0 chr1 63919557 63919853 -178744500 + AluSx SINE Alu 1 302 -10 749 233 43 43 chr1 63920244 63920454 -178743899 + MIR SINE MIR 1 210 -52 202 245 20 0 chr1 63920722 63920771 -178743582 - L2 LINE L2 -12 3260 3211 1633 170 10 14 chr1 63920825 63921113 -178743240 - AluJo SINE Alu -13 299 13 200 283 75 0 chr1 63921116 63921169 -178743184 - MIR SINE MIR -61 147 91 270 73 0 0 chr1 63922412 63922453 -178741900 + (TG)n Simple_repeat Simple_repeat 1 41 0 204 40 0 0 chr1 63922595 63922620 -178741733 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr1 63922685 63922708 -178741645 + (TG)n Simple_repeat Simple_repeat 2 24 0 210 250 59 15 chr1 63923037 63923105 -178741248 + L2 LINE L2 3194 3264 -8 202 327 50 0 chr1 63923798 63923899 -178740454 + MIR SINE MIR 49 154 -108 714 285 19 28 chr1 63923930 63924144 -178740209 - MIR SINE MIR -43 219 8 187 296 0 49 chr1 63925291 63925372 -178738981 + MIR SINE MIR 152 228 -34 328 248 264 0 chr1 63925466 63925595 -178738758 + MIR SINE MIR 87 249 -13 376 295 31 8 chr1 63925703 63925832 -178738521 + MIR SINE MIR 24 155 -107 288 339 10 19 chr1 63926563 63926796 -178737557 + CT-rich Low_complexity Low_complexity 1 230 0 189 339 123 60 chr1 63926815 63927213 -178737140 - L2 LINE L2 -41 3231 2809 2102 193 0 8 chr1 63927992 63928354 -178735999 - MLT1A1 LTR MaLR 0 365 7 2238 171 124 30 chr1 63928365 63928840 -178735513 + MLT2B1 LTR ERVL 1 520 0 181 363 38 12 chr1 63929103 63929183 -178735170 - MIR SINE MIR -106 102 21 410 255 69 78 chr1 63929498 63929702 -178734651 + MIR SINE MIR 20 221 -41 205 350 100 0 chr1 63929900 63930020 -178734333 - L2 LINE L2 -5 3267 3136 237 282 26 26 chr1 63930331 63930409 -178733944 - MIR SINE MIR 0 262 185 189 176 39 39 chr1 63931666 63931717 -178732636 - MIR3 SINE MIR -3 205 155 254 389 0 0 chr1 63931984 63932074 -178732279 + MIR SINE MIR 37 126 -82 257 59 0 0 chr1 63933223 63933257 -178731096 + HERVL LTR ERVL 5387 5420 -234 42413 60 4 1 chr1 63933263 63938921 -178725432 + L1P2 LINE L1 11 5690 -464 2557 23 7 10 chr1 63938921 63939221 -178725132 + AluY SINE Alu 1 299 -12 207 323 87 51 chr1 63939616 63939811 -178724542 - L2 LINE L2 -219 3053 2852 376 297 0 43 chr1 63940011 63940149 -178724204 + MIR SINE MIR 21 152 -110 657 168 99 43 chr1 63940227 63940388 -178723965 + MER3 DNA MER1_type 6 128 -81 480 272 26 138 chr1 63940543 63940892 -178723461 + L2 LINE L2 2870 3257 -15 249 33 0 0 chr1 63940892 63940922 -178723431 + (TG)n Simple_repeat Simple_repeat 1 30 0 2489 152 73 11 chr1 63940922 63941376 -178722977 - L1MB3 LINE L1 -14 6169 5688 554 262 31 21 chr1 63941211 63941402 -178722951 - L1ME1 LINE L1 -314 5852 5660 480 272 26 138 chr1 63941376 63941444 -178722909 + L2 LINE L2 3254 3241 -31 * 234 0 0 0 chr1 63941538 63941564 -178722789 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 327 196 14 chr1 63942716 63942930 -178721423 + L3 LINE CR1 697 949 -628 414 211 41 48 chr1 63942974 63943152 -178721201 - HsTC2 DNA Tc2 -2 1896 1713 1303 242 46 3 chr1 63943152 63943458 -178720895 - HsTC2 DNA Tc2 -1579 319 1 220 324 20 78 chr1 63943458 63943560 -178720793 + L3 LINE CR1 1004 1099 -478 249 341 77 0 chr1 63943688 63943779 -178720574 + L2 LINE L2 3197 3294 -19 217 308 205 22 chr1 63944059 63944244 -178720109 + MIR SINE MIR 31 249 -13 198 243 157 14 chr1 63944366 63944436 -178719917 - MIR SINE MIR -87 121 42 451 289 19 50 chr1 63944461 63944620 -178719733 - MIR3 SINE MIR -17 191 38 1030 275 64 67 chr1 63944676 63945180 -178719173 + L2 LINE L2 2798 3306 -7 482 389 52 26 chr1 63945165 63945471 -178718882 - L2 LINE L2 -16 3256 2943 * 1667 327 149 38 chr1 63945544 63946747 -178717606 - L2 LINE L2 -498 2816 1389 2063 98 7 4 chr1 63946747 63947046 -178717307 - AluSc SINE Alu 0 300 1 1667 327 149 38 chr1 63947046 63947443 -178716910 - L2 LINE L2 -1925 1389 1037 275 370 74 7 chr1 63947601 63947736 -178716617 + L2 LINE L2 3111 3254 -18 921 240 123 91 chr1 63948768 63949263 -178715090 + MLT1H LTR MaLR 4 514 -35 307 335 147 0 chr1 63949316 63949486 -178714867 + L1ME4a LINE L1 5725 5919 -202 2493 52 7 3 chr1 63949811 63950119 -178714234 + AluY SINE Alu 1 309 -2 577 261 24 38 chr1 63950217 63950428 -178713925 + L2 LINE L2 3105 3312 -1 228 286 80 18 chr1 63950528 63950640 -178713713 + MIR SINE MIR 79 197 -65 443 292 125 12 chr1 63950704 63950872 -178713481 - MIR SINE MIR -44 218 32 281 369 84 19 chr1 63951360 63951623 -178712730 + L2 LINE L2 2810 3089 -183 305 193 181 0 chr1 63951704 63951787 -178712566 + MIR SINE MIR 138 235 -27 3980 146 124 91 chr1 63952008 63952398 -178711955 + L1MC3 LINE L1 6736 7112 -673 263 274 0 0 chr1 63952398 63952460 -178711893 + MLT1F1 LTR MaLR 50 111 -456 3980 146 124 91 chr1 63952460 63953019 -178711334 + L1MC3 LINE L1 7112 7779 -6 307 333 27 18 chr1 63953097 63953208 -178711145 - MIR SINE MIR -126 136 25 1833 166 3 3 chr1 63953442 63953743 -178710610 - AluJb SINE Alu -11 301 1 575 375 71 26 chr1 63954436 63955081 -178709272 + L2 LINE L2 2291 2964 -350 611 281 27 11 chr1 63955677 63955862 -178708491 - MER5A DNA MER1_type 0 189 2 511 239 15 37 chr1 63956029 63956163 -178708190 + L2 LINE L2 3183 3313 0 1270 170 27 27 chr1 63956273 63956497 -178707856 - MER58A DNA MER1_type 0 224 1 211 242 20 0 chr1 63956603 63956702 -178707651 + (TA)n Simple_repeat Simple_repeat 1 101 0 372 211 0 34 chr1 63956719 63956894 -178707459 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 280 279 310 0 chr1 63956896 63957025 -178707328 + MIR SINE MIR 81 249 -13 198 277 129 40 chr1 63957164 63957265 -178707088 + MIR3 SINE MIR 9 118 -90 * 398 295 115 51 chr1 63957249 63957737 -178706616 + L2 LINE L2 1292 1810 -1504 1291 255 179 17 chr1 63957908 63958540 -178705813 + L2 LINE L2 1806 2539 -775 964 156 0 13 chr1 63958559 63958713 -178705640 - AluJb SINE Alu -25 287 136 309 217 54 11 chr1 63958752 63958844 -178705509 + L2 LINE L2 1612 1707 -1607 646 270 144 67 chr1 63958850 63959515 -178704838 + L2 LINE L2 2595 3313 0 619 280 56 24 chr1 63959706 63959956 -178704397 - MIR SINE MIR 0 262 5 274 304 163 15 chr1 63959973 63960108 -178704245 + L2 LINE L2 3116 3270 -2 280 289 135 0 chr1 63960791 63960895 -178703458 - MIR SINE MIR -109 153 36 475 313 31 58 chr1 63960949 63961243 -178703110 + L2 LINE L2 2863 3148 -165 5146 139 38 19 chr1 63961328 63962242 -178702111 - L1MA8 LINE L1 -7 6284 5353 534 273 16 0 chr1 63962244 63962372 -178701981 + L2 LINE L2 3184 3313 0 901 290 5 0 chr1 63962498 63962741 -178701612 + MIR SINE MIR 19 262 0 312 143 0 0 chr1 63962873 63962929 -178701424 + (GAAAA)n Simple_repeat Simple_repeat 3 58 0 380 353 33 0 chr1 63963477 63963599 -178700754 - L2 LINE L2 -1 3271 3146 815 164 0 0 chr1 63964918 63965052 -178699301 - FRAM SINE Alu 0 176 43 234 182 36 36 chr1 63965196 63965251 -178699102 + L2 LINE L2 3218 3272 0 225 220 127 93 chr1 63965629 63965779 -178698574 - L3 LINE CR1 -4 1573 1419 500 228 114 39 chr1 63966787 63967042 -178697311 + HAL1 LINE L1 2201 2474 -33 994 201 27 0 chr1 63967426 63967610 -178696743 - MER5A DNA MER1_type 0 189 1 267 180 40 196 chr1 63968230 63968394 -178695959 + MIR SINE MIR 17 153 -62 478 263 103 31 chr1 63968451 63968675 -178695678 + MIR SINE MIR 11 250 -12 1086 293 43 45 chr1 63968811 63969278 -178695075 - L2 LINE L2 -1 3312 2847 515 220 91 8 chr1 63969305 63969435 -178694918 + MLT1B LTR MaLR 2 142 -248 3126 99 27 18 chr1 63969435 63969877 -178694476 + MER1A DNA MER1_type 1 446 -83 8375 81 8 19 chr1 63969978 63970195 -178694158 + HERVL LTR ERVL 4304 4522 -1132 2228 124 0 0 chr1 63970195 63970501 -178693852 + AluSx SINE Alu 1 306 -6 8375 81 8 19 chr1 63970501 63971412 -178692941 + HERVL LTR ERVL 4522 5420 -234 13532 89 11 0 chr1 63971418 63973235 -178691118 + L1P LINE L1 11 1846 -4300 355 135 0 0 chr1 64023280 64023356 -178640997 + AluSp/q SINE Alu 234 309 0 1869 197 61 44 chr1 64023360 64023887 -178640466 - L1MD2 LINE L1 -279 6080 5545 3477 256 45 16 chr1 64023947 64025272 -178639081 - L1M1 LINE L1 -5513 2052 10 435 306 47 35 chr1 64025285 64025625 -178638728 - L1MEd LINE L1 -4910 1209 866 2170 193 48 66 chr1 64025732 64026354 -178637999 - LTR9 LTR ERV1 0 612 2 595 231 60 15 chr1 64026362 64026561 -178637792 - L1MEd LINE L1 -5329 790 583 539 192 42 8 chr1 64027020 64027140 -178637213 - LTR8A LTR ERV1 -61 666 543 2159 149 14 16 chr1 64027204 64027611 -178636742 - LTR8A LTR ERV1 -303 424 1 1173 199 41 11 chr1 64027611 64027877 -178636476 - LTR9-int LTR ERV1 0 6263 5990 1259 128 44 9 chr1 64027890 64028116 -178636237 - LTR9-int LTR ERV1 -105 6226 5993 289 326 123 29 chr1 64028996 64029134 -178635219 - MIR3 SINE MIR -49 159 9 524 281 48 20 chr1 64030200 64030346 -178634007 - L2 LINE L2 0 3272 3123 1033 254 13 4 chr1 64030394 64030630 -178633723 - MIR SINE MIR -22 240 3 180 325 59 97 chr1 64030719 64031188 -178633165 - L2 LINE L2 -260 3053 2606 8111 155 23 65 chr1 64031191 64032165 -178632188 + L1MA6 LINE L1 3646 4659 -1641 2118 128 10 0 chr1 64032165 64032463 -178631890 - AluSg SINE Alu -9 301 1 8111 155 23 65 chr1 64032463 64033214 -178631139 + L1MA6 LINE L1 4659 5439 -861 2136 108 16 13 chr1 64033214 64033521 -178630832 + AluSg SINE Alu 1 308 -2 8111 155 23 65 chr1 64033521 64034563 -178629790 + L1MA6 LINE L1 5439 6296 -4 1709 141 80 42 chr1 64035701 64036062 -178628291 + THE1C LTR MaLR 1 375 0 320 318 13 45 chr1 64036169 64036323 -178628030 + MIR3 SINE MIR 49 197 -11 265 391 88 5 chr1 64036496 64036688 -178627665 - MIR SINE MIR -53 209 2 451 258 148 24 chr1 64036743 64036952 -178627401 + MIR SINE MIR 1 235 -27 21 0 0 0 chr1 64036965 64036986 -178627367 + AT_rich Low_complexity Low_complexity 1 21 0 927 249 21 17 chr1 64037677 64037914 -178626439 - MIR SINE MIR -23 239 2 278 250 15 0 chr1 64038142 64038210 -178626143 - MIR SINE MIR -105 157 89 364 305 27 21 chr1 64038652 64038839 -178625514 - MER117 DNA MER1_type -9 188 1 221 354 31 23 chr1 64039177 64039307 -178625046 + L2 LINE L2 2658 2788 -526 277 255 4 0 chr1 64039457 64039528 -178624825 + MIR SINE MIR 68 140 -68 710 196 0 6 chr1 64040488 64040651 -178623702 + GA-rich Low_complexity Low_complexity 4 165 0 212 210 99 86 chr1 64041096 64041177 -178623176 + L2 LINE L2 3191 3272 0 236 329 12 12 chr1 64041308 64041393 -178622960 + MIR SINE MIR 1 85 -177 799 237 31 18 chr1 64041429 64041841 -178622512 + MER110 LTR ERV1 40 491 0 2240 120 0 7 chr1 64042001 64042309 -178622044 - AluSx SINE Alu -6 306 1 683 252 21 98 chr1 64042856 64043090 -178621263 - MIR SINE MIR -35 227 12 253 271 52 58 chr1 64043230 64043385 -178620968 - L2 LINE L2 -573 2741 2588 288 226 16 0 chr1 64043902 64043964 -178620389 + CT-rich Low_complexity Low_complexity 2 64 0 405 136 0 0 chr1 64043968 64044034 -178620319 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 2379 81 0 3 chr1 64044567 64044874 -178619479 + AluY SINE Alu 1 306 -5 278 298 114 23 chr1 64045060 64045191 -178619162 + MIR SINE MIR 110 252 -10 739 175 0 0 chr1 64046036 64046176 -178618177 + FLAM_C SINE Alu 3 142 0 286 300 150 7 chr1 64046184 64046324 -178618029 - MIR SINE MIR -102 160 1 3549 171 33 11 chr1 64047025 64047751 -178616602 + L1MB3 LINE L1 5440 6181 -2 2237 112 0 14 chr1 64047774 64048070 -178616283 + AluSx SINE Alu 1 292 -20 583 228 8 0 chr1 64049131 64049254 -178615099 + MER45A DNA AcHobo 55 178 0 763 260 16 93 chr1 64049395 64049718 -178614635 + L2 LINE L2 3015 3312 -1 272 206 32 16 chr1 64049901 64049964 -178614389 - MIR SINE MIR -63 145 82 244 329 19 11 chr1 64050517 64050635 -178613718 + MIR SINE MIR 20 139 -69 337 259 59 30 chr1 64051480 64051604 -178612749 + MIR SINE MIR 40 165 -65 367 326 54 16 chr1 64051682 64051811 -178612542 - L2 LINE L2 -2 3270 3137 216 0 0 0 chr1 64051865 64051889 -178612464 + (T)n Simple_repeat Simple_repeat 1 24 0 327 318 16 31 chr1 64052718 64052847 -178611506 + MIR SINE MIR 28 154 -108 296 231 26 26 chr1 64052975 64053053 -178611300 + CT-rich Low_complexity Low_complexity 3 80 0 1242 264 95 21 chr1 64053107 64053591 -178610762 - LTR33 LTR ERVL 0 521 2 776 254 46 9 chr1 64053608 64053825 -178610528 + MIR SINE MIR 17 241 -21 213 343 70 49 chr1 64054330 64054473 -178609880 + MIR SINE MIR 7 152 -56 216 244 0 0 chr1 64054567 64054612 -178609741 + MIR SINE MIR 98 142 -66 205 171 0 0 chr1 64054732 64054773 -178609580 + C-rich Low_complexity Low_complexity 2 42 0 1746 163 0 62 chr1 64055888 64056194 -178608159 + AluSx SINE Alu 1 287 -25 415 327 130 5 chr1 64056286 64056494 -178607859 + MIR SINE MIR 12 245 -17 389 305 266 0 chr1 64056514 64056717 -178607636 + MIR SINE MIR 3 259 -3 188 266 25 25 chr1 64056892 64056971 -178607382 - L2 LINE L2 -214 3058 2980 221 352 14 0 chr1 64056971 64057042 -178607311 + L2 LINE L2 2999 3070 -202 516 293 176 0 chr1 64057259 64057481 -178606872 - MIR SINE MIR 0 262 2 300 300 12 12 chr1 64058164 64058244 -178606109 - MIR3 SINE MIR -15 193 114 1389 154 107 63 chr1 64059107 64059536 -178604817 + LTR7 LTR ERV1 1 448 -2 3274 116 45 4 chr1 64059650 64060141 -178604212 - MER9 LTR ERVK 0 511 1 295 310 103 14 chr1 64060992 64061137 -178603216 + MIR SINE MIR 29 186 -76 385 259 79 109 chr1 64062047 64062515 -178601838 - L1ME LINE L1 -394 5768 5315 1285 227 80 0 chr1 64062519 64062832 -178601521 + MER2 DNA MER2_type 2 339 -6 408 270 54 89 chr1 64062847 64063162 -178601191 - L1ME LINE L1 -837 5309 5006 233 349 124 28 chr1 64063446 64063503 -178600850 + L3 LINE CR1 979 1029 -548 2390 87 3 0 chr1 64063503 64063812 -178600541 + AluY SINE Alu 1 310 -1 233 349 124 28 chr1 64063812 64063972 -178600381 + L3 LINE CR1 1029 1217 -360 241 254 0 0 chr1 64063987 64064042 -178600311 - L2 LINE L2 -5 3308 3254 666 310 10 5 chr1 64064274 64064471 -178599882 + MIR SINE MIR 34 231 -31 376 298 204 29 chr1 64064528 64064773 -178599580 + L3 LINE CR1 1289 1576 -1 321 273 10 20 chr1 64065202 64065301 -178599052 - MIR SINE MIR -113 149 52 664 263 0 30 chr1 64065378 64065576 -178598777 + Charlie8 DNA MER1_type 74 265 -2152 280 308 136 6 chr1 64066403 64066572 -178597781 + MIR SINE MIR 66 256 -6 351 315 31 8 chr1 64066582 64066709 -178597644 + MIR3 SINE MIR 66 195 -13 227 274 0 0 chr1 64067584 64067635 -178596718 + GA-rich Low_complexity Low_complexity 1 51 0 225 0 0 0 chr1 64067810 64067835 -178596518 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 503 316 25 30 chr1 64068624 64068861 -178595492 + MIR SINE MIR 17 252 -10 445 280 20 33 chr1 64069384 64069534 -178594819 + MIR SINE MIR 20 167 -95 294 325 24 24 chr1 64069689 64069815 -178594538 - MIR SINE MIR -89 173 48 423 285 62 57 chr1 64069891 64070084 -178594269 - MIR3 SINE MIR 0 208 15 260 171 0 0 chr1 64070211 64070252 -178594101 + Charlie8 DNA MER1_type 1375 1415 -1002 2045 105 0 14 chr1 64070379 64070709 -178593644 + AluSx SINE Alu 1 326 0 291 207 31 14 chr1 64070733 64070822 -178593531 - MIR SINE MIR -107 101 11 233 200 29 14 chr1 64070967 64071037 -178593316 + (CAAA)n Simple_repeat Simple_repeat 4 74 0 702 272 3 27 chr1 64071052 64071353 -178593000 - L1M4 LINE L1 -1391 4755 4462 206 317 138 32 chr1 64072117 64072240 -178592113 - L2 LINE L2 -1 3271 3136 422 342 110 40 chr1 64072321 64072722 -178591631 - L2 LINE L2 -348 2966 2538 272 298 53 26 chr1 64072697 64072811 -178591542 - MIR SINE MIR -126 136 20 * 591 211 197 0 chr1 64073028 64073170 -178591183 - MER5A DNA MER1_type 0 189 20 198 0 0 0 chr1 64073174 64073196 -178591157 + (T)n Simple_repeat Simple_repeat 1 22 0 309 307 16 63 chr1 64073206 64073294 -178591059 + MIR SINE MIR 11 93 -169 1644 169 80 71 chr1 64073294 64073757 -178590596 - MLT1C LTR MaLR 0 467 1 309 307 16 63 chr1 64073757 64073795 -178590558 + MIR SINE MIR 93 131 -131 1384 211 0 0 chr1 64073795 64074051 -178590302 - AluJo SINE Alu -15 297 42 245 189 326 0 chr1 64074054 64074149 -178590204 + MIR SINE MIR 119 244 -18 367 290 103 28 chr1 64074167 64074312 -178590041 - MIR SINE MIR -34 228 73 934 234 18 13 chr1 64075202 64075428 -178588925 + MIR SINE MIR 35 261 -1 592 249 78 66 chr1 64075531 64075788 -178588565 - L2 LINE L2 -497 2817 2558 213 279 0 59 chr1 64076269 64076337 -178588016 + L2 LINE L2 3242 3305 -8 299 162 23 8 chr1 64076457 64076596 -178587757 + CT-rich Low_complexity Low_complexity 1 141 0 390 57 0 0 chr1 64076596 64076649 -178587704 + (CA)n Simple_repeat Simple_repeat 1 53 0 351 314 67 42 chr1 64076711 64076994 -178587359 - MLT1H LTR MaLR -241 308 19 798 241 65 0 chr1 64077081 64077343 -178587010 - MER113 DNA MER1_type? -64 457 179 247 331 66 8 chr1 64078865 64078986 -178585367 - L2 LINE L2 -4 3309 3182 1659 171 14 20 chr1 64079371 64079663 -178584690 + AluJo SINE Alu 1 290 -22 2246 141 27 12 chr1 64080274 64080685 -178583668 - L1MA5A LINE L1 -4 6293 5877 193 277 85 43 chr1 64080753 64080847 -178583506 + L3b LINE CR1 1134 1231 -352 324 306 67 89 chr1 64080885 64081065 -178583288 - MIR3 SINE MIR -9 199 24 1008 237 44 0 chr1 64081524 64081773 -178582580 + L2 LINE L2 1825 2084 -1230 1051 90 8 0 chr1 64081773 64081906 -178582447 - AluSq/x SINE Alu -178 134 1 839 202 11 11 chr1 64081910 64082093 -178582260 + L2 LINE L2 2066 2248 -1066 636 261 159 86 chr1 64082098 64082560 -178581793 + L2 LINE L2 2528 3021 -292 2410 217 66 75 chr1 64082578 64083380 -178580973 - MER21B LTR ERV1 -57 806 12 592 328 96 4 chr1 64083390 64083661 -178580692 + L2 LINE L2 3017 3312 -1 690 289 35 58 chr1 64083844 64083870 -178580483 + MIR SINE MIR 9 34 -228 2265 116 0 0 chr1 64083870 64084173 -178580180 + AluSx SINE Alu 1 303 -9 690 289 35 58 chr1 64084173 64084406 -178579947 + MIR SINE MIR 34 262 0 277 188 24 0 chr1 64084493 64084578 -178579775 + (TA)n Simple_repeat Simple_repeat 2 88 0 250 279 0 47 chr1 64086143 64086229 -178578124 + MIR SINE MIR 117 198 -64 1517 186 61 0 chr1 64086265 64086529 -178577824 - AluJo SINE Alu -32 280 1 241 258 133 23 chr1 64086916 64087044 -178577309 - MIR SINE MIR -48 214 73 * 272 298 114 18 chr1 64087031 64087145 -178577208 + L2 LINE L2 3189 3313 0 181 220 60 0 chr1 64087149 64087199 -178577154 - MIR SINE MIR -173 89 37 25 0 0 0 chr1 64087329 64087354 -178576999 + AT_rich Low_complexity Low_complexity 1 25 0 894 252 19 52 chr1 64087553 64087977 -178576376 - L1ME1 LINE L1 -5 6230 5821 1461 186 87 24 chr1 64087977 64088311 -178576042 + MSTD LTR MaLR 1 355 -41 373 94 0 0 chr1 64088343 64088396 -178575957 + MSTD LTR MaLR 405 457 0 3963 238 74 23 chr1 64088398 64088748 -178575605 - L1ME1 LINE L1 -407 5826 5495 1790 207 60 20 chr1 64088748 64089197 -178575156 + MLT1C LTR MaLR 1 467 0 3963 238 74 23 chr1 64089197 64089320 -178575033 - L1ME1 LINE L1 -738 5495 5380 342 80 0 0 chr1 64089320 64089370 -178574983 + (CA)n Simple_repeat Simple_repeat 2 51 0 3963 238 74 23 chr1 64089370 64090769 -178573584 - L1ME1 LINE L1 -853 5380 3833 3256 260 83 43 chr1 64090782 64092104 -178572249 - L1ME1 LINE L1 -2533 3682 2413 1201 175 35 13 chr1 64092104 64092333 -178572020 + MER46A DNA MER2_type 2 235 -1 3256 260 83 43 chr1 64092333 64092579 -178571774 - L1ME1 LINE L1 -3802 2413 2178 195 114 0 0 chr1 64092579 64092614 -178571739 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 3256 260 83 43 chr1 64092614 64094131 -178570222 - L1ME1 LINE L1 -4037 2178 403 203 150 17 67 chr1 64094131 64094191 -178570162 + (ATATG)n Simple_repeat Simple_repeat 4 60 0 3256 260 83 43 chr1 64094191 64094574 -178569779 - L1ME1 LINE L1 -5812 403 37 221 338 65 29 chr1 64094626 64094765 -178569588 + MIR SINE MIR 53 196 -66 428 223 0 8 chr1 64094815 64094945 -178569408 + CT-rich Low_complexity Low_complexity 2 130 0 762 326 69 45 chr1 64094964 64095529 -178568824 - L2 LINE L2 -62 3251 2671 1941 116 95 3 chr1 64096674 64097002 -178567351 - AluSx SINE Alu 0 355 2 369 0 0 0 chr1 64097062 64097103 -178567250 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 414 0 0 0 chr1 64097102 64097148 -178567205 + (TA)n Simple_repeat Simple_repeat 1 46 0 430 307 93 19 chr1 64097406 64097621 -178566732 - MIR SINE MIR -1 261 31 187 256 133 33 chr1 64097949 64098039 -178566314 - MIR SINE MIR -41 221 123 196 288 45 15 chr1 64098261 64098327 -178566026 - MIR SINE MIR -116 146 79 532 174 16 0 chr1 64098942 64099063 -178565290 + CT-rich Low_complexity Low_complexity 2 124 0 1720 150 40 23 chr1 64099077 64099377 -178564976 - AluJb SINE Alu -7 305 1 13875 118 19 38 chr1 64099533 64100087 -178564266 + Tigger1 DNA MER2_type 8 571 -1847 1571 173 10 42 chr1 64100087 64100394 -178563959 + AluJb SINE Alu 12 308 -4 13875 118 19 38 chr1 64100394 64102296 -178562057 + Tigger1 DNA MER2_type 571 2418 0 549 242 73 22 chr1 64102330 64102508 -178561845 - MIR SINE MIR -2 260 74 746 263 132 4 chr1 64102513 64102741 -178561612 - MIR SINE MIR 0 262 6 2864 226 29 28 chr1 64102891 64104571 -178559782 + L1ME1 LINE L1 4387 6058 -108 366 317 63 7 chr1 64104607 64104749 -178559604 + MIR SINE MIR 23 172 -90 1544 176 16 72 chr1 64105334 64105721 -178558632 - MLT1A1 LTR MaLR 0 365 1 2639 111 3 11 chr1 64106106 64106484 -178557869 + THE1C LTR MaLR 1 375 0 211 339 134 64 chr1 64107021 64107192 -178557161 - L2 LINE L2 -7 3265 3083 * 224 268 107 27 chr1 64107189 64107301 -178557052 - MIR SINE MIR -8 254 134 546 280 125 15 chr1 64107437 64107637 -178556716 + MIR SINE MIR 13 234 -28 192 256 0 0 chr1 64108767 64108806 -178555547 + L2 LINE L2 3219 3257 -15 210 133 67 44 chr1 64108880 64108925 -178555428 + MIR SINE MIR 104 149 -113 248 369 12 0 chr1 64108942 64109026 -178555327 - MIR3 SINE MIR -35 173 89 521 317 19 14 chr1 64109572 64109780 -178554573 + MIR SINE MIR 3 211 -51 560 313 92 75 chr1 64110263 64110783 -178553570 + L2 LINE L2 2765 3271 -1 229 288 50 25 chr1 64111145 64111305 -178553048 - MER103 DNA DNA -2 164 1 401 53 0 18 chr1 64111666 64111723 -178552630 + (TA)n Simple_repeat Simple_repeat 2 57 0 188 300 20 70 chr1 64111831 64111931 -178552422 + MIR SINE MIR 118 212 -50 2278 78 0 0 chr1 64112221 64112550 -178551803 + AluY SINE Alu 1 329 0 321 304 29 43 chr1 64113703 64113841 -178550512 + MIR SINE MIR 76 211 -51 797 290 16 28 chr1 64113901 64114153 -178550200 - MIR SINE MIR -1 261 13 260 337 11 0 chr1 64114233 64114322 -178550031 - MIR SINE MIR -92 116 27 658 304 51 19 chr1 64114964 64115178 -178549175 + MIR SINE MIR 1 221 -41 1807 179 24 0 chr1 64115618 64115948 -178548405 + MER58B DNA MER1_type 4 341 0 277 327 19 10 chr1 64116090 64116194 -178548159 - MIR SINE MIR -156 106 2 187 314 57 86 chr1 64116882 64116987 -178547366 - L2 LINE L2 0 3272 3171 427 285 35 81 chr1 64117126 64117298 -178547055 + MIR3 SINE MIR 1 164 -44 2073 156 0 0 chr1 64117624 64117932 -178546421 - AluJb SINE Alu -3 309 2 526 254 84 72 chr1 64118382 64118493 -178545860 - LTR16A LTR ERVL -78 372 264 1992 136 157 8 chr1 64118493 64118862 -178545491 + MSTA LTR MaLR 1 424 -4 526 254 84 72 chr1 64118862 64119084 -178545269 - LTR16A LTR ERVL -186 264 35 468 314 104 9 chr1 64119306 64119526 -178544827 - LTR33 LTR ERVL -278 243 3 320 298 185 0 chr1 64119825 64120030 -178544323 - MER112 DNA MER1_type 0 260 18 1896 293 122 20 chr1 64121536 64122200 -178542153 + L2 LINE L2 2195 3013 -300 2395 162 47 11 chr1 64122200 64122651 -178541702 + MLT1C LTR MaLR 1 467 0 1896 293 122 20 chr1 64122651 64122987 -178541366 + L2 LINE L2 3013 3313 0 192 327 56 0 chr1 64123012 64123119 -178541234 + L2 LINE L2 2563 2675 -639 259 301 0 0 chr1 64123215 64123288 -178541065 + MLT1H LTR MaLR 96 168 -381 388 261 22 15 chr1 64123382 64123516 -178540837 + MLT1G1 LTR MaLR 460 594 -1 272 204 0 0 chr1 64123593 64123642 -178540711 + Tigger2 DNA MER2_type 2 50 -2668 2116 159 44 16 chr1 64123666 64124100 -178540253 + Tigger2 DNA MER2_type 2273 2718 0 205 171 0 0 chr1 64124108 64124143 -178540210 + CT-rich Low_complexity Low_complexity 2 36 0 468 349 146 9 chr1 64124143 64124155 -178540198 + L2 LINE L2 2915 2924 -348 318 106 0 0 chr1 64124155 64124202 -178540151 + (CA)n Simple_repeat Simple_repeat 1 47 0 468 349 146 9 chr1 64124202 64124504 -178539849 + L2 LINE L2 2924 3272 0 433 269 117 35 chr1 64125296 64125493 -178538860 - MIR SINE MIR -28 234 22 298 321 5 75 chr1 64126515 64126702 -178537651 + L2 LINE L2 2934 3107 -165 1757 221 75 27 chr1 64126760 64127172 -178537181 - MLT1D LTR MaLR -2 503 63 2698 133 19 2 chr1 64127172 64127593 -178536760 + MSTA LTR MaLR 1 428 0 1757 221 75 27 chr1 64127593 64127660 -178536693 - MLT1D LTR MaLR -442 63 1 270 267 27 13 chr1 64127684 64127759 -178536594 + L2 LINE L2 3229 3304 -9 312 137 0 0 chr1 64128295 64128346 -178536007 + (A)n Simple_repeat Simple_repeat 1 51 0 355 250 7 79 chr1 64128744 64128896 -178535457 - MIR SINE MIR -56 206 66 231 326 16 8 chr1 64128989 64129118 -178535235 + (TA)n Simple_repeat Simple_repeat 1 130 0 384 332 72 60 chr1 64129369 64129634 -178534719 - L2 LINE L2 -14 3258 2991 347 275 36 60 chr1 64130754 64130921 -178533432 + MIR SINE MIR 20 182 -80 180 111 0 0 chr1 64131008 64131035 -178533318 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2311 92 10 0 chr1 64131037 64131343 -178533010 - AluY SINE Alu -2 309 1 243 238 0 16 chr1 64131360 64131423 -178532930 + (GAATG)n Simple_repeat Simple_repeat 3 64 0 230 278 134 10 chr1 64131845 64131942 -178532411 + L2 LINE L2 3200 3308 -5 251 341 0 48 chr1 64131946 64132072 -178532281 + MIR3 SINE MIR 37 156 -52 189 216 0 0 chr1 64132225 64132262 -178532091 + L3 LINE CR1 1523 1559 -18 226 286 104 13 chr1 64132798 64132875 -178531478 - L2 LINE L2 -1 3312 3229 259 274 60 0 chr1 64133074 64133158 -178531195 + MIR SINE MIR 172 260 -2 23 0 0 0 chr1 64133944 64133967 -178530386 + AT_rich Low_complexity Low_complexity 1 23 0 455 359 112 0 chr1 64134513 64134736 -178529617 - MIR SINE MIR -10 252 5 205 151 38 0 chr1 64134736 64134789 -178529564 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr1 64137278 64137299 -178527054 + AT_rich Low_complexity Low_complexity 1 21 0 247 277 64 64 chr1 64137832 64137973 -178526380 - MIR SINE MIR -14 248 108 928 120 47 5 chr1 64138653 64138845 -178525508 - Charlie5 DNA MER1_type 0 2624 2425 2498 77 0 0 chr1 64138959 64139258 -178525095 - AluSg SINE Alu -11 299 1 237 255 0 0 chr1 64139577 64139624 -178524729 + L2 LINE L2 3234 3280 -33 549 283 72 11 chr1 64139757 64139937 -178524416 - MIR SINE MIR -71 191 1 733 281 75 10 chr1 64140002 64140241 -178524112 - MIR SINE MIR 0 262 9 289 335 71 32 chr1 64140954 64141109 -178523244 + MIR3 SINE MIR 25 185 -23 459 299 7 22 chr1 64142340 64142477 -178521876 - L2 LINE L2 -173 3099 2965 471 276 61 18 chr1 64143385 64143548 -178520805 + MIR SINE MIR 57 226 -36 406 333 60 48 chr1 64143803 64143916 -178520437 - MIR SINE MIR -7 255 145 2477 62 0 0 chr1 64143916 64144220 -178520133 - AluY SINE Alu -7 304 1 406 333 60 48 chr1 64144220 64144358 -178519995 - MIR SINE MIR -117 145 1 260 311 129 8 chr1 64145369 64145501 -178518852 + MIR SINE MIR 103 250 -12 434 268 73 24 chr1 64145540 64145663 -178518690 - L2 LINE L2 0 3272 3144 432 281 7 37 chr1 64146052 64146187 -178518166 - MIR3 SINE MIR -73 135 5 601 271 91 19 chr1 64146272 64146482 -178517871 - MIR SINE MIR -25 237 13 1457 259 78 66 chr1 64146585 64146880 -178517473 + MER68 LTR ERV1 1 308 -254 2392 81 3 3 chr1 64146880 64147188 -178517165 - AluY SINE Alu -3 308 1 1457 259 78 66 chr1 64147188 64147441 -178516912 + MER68 LTR ERV1 308 556 -6 1793 181 3 7 chr1 64147505 64147814 -178516539 - AluJb SINE Alu 0 312 5 469 260 11 51 chr1 64147836 64148013 -178516340 - L2 LINE L2 -4 3309 3140 265 225 22 56 chr1 64148142 64148231 -178516122 - L2 LINE L2 -218 3054 2969 217 245 0 19 chr1 64149568 64149621 -178514732 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 215 286 0 0 chr1 64150408 64150464 -178513889 - L2 LINE L2 -1 3271 3216 299 244 9 0 chr1 64150567 64150682 -178513671 + (TA)n Simple_repeat Simple_repeat 1 116 0 399 302 47 29 chr1 64151226 64151398 -178512955 - MIR SINE MIR -8 254 80 366 261 0 43 chr1 64151476 64151591 -178512762 - MIR SINE MIR -69 139 30 310 304 37 15 chr1 64152138 64152273 -178512080 - MIR SINE MIR -71 191 54 902 276 78 41 chr1 64152847 64153234 -178511119 + L2 LINE L2 2350 2750 -564 240 347 12 54 chr1 64153514 64153681 -178510672 + L2 LINE L2 2709 2868 -446 396 192 0 0 chr1 64153733 64153837 -178510516 + (CCA)n Simple_repeat Simple_repeat 1 104 0 204 355 8 16 chr1 64153856 64153977 -178510376 + (CCA)n Simple_repeat Simple_repeat 1 120 0 241 274 0 0 chr1 64154048 64154099 -178510254 - MIR SINE MIR -201 61 11 340 354 54 8 chr1 64154555 64154685 -178509668 + MIR3 SINE MIR 10 145 -63 1891 171 0 13 chr1 64154740 64155056 -178509297 - AluJo SINE Alu 0 312 1 277 263 0 125 chr1 64156230 64156390 -178507963 - L2 LINE L2 -217 3055 2916 1664 152 47 145 chr1 64156421 64156471 -178507882 - MER47B DNA MER2_type -1953 370 317 2026 126 63 38 chr1 64156471 64156836 -178507517 - THE1C LTR MaLR -1 374 1 10305 115 35 52 chr1 64156836 64158442 -178505911 - THE1C-int LTR MaLR 0 1580 3 2011 148 40 35 chr1 64158444 64158817 -178505536 - THE1C LTR MaLR 0 375 1 1664 152 47 145 chr1 64158817 64159169 -178505184 - MER47B DNA MER2_type -2006 317 4 617 342 45 12 chr1 64159278 64159521 -178504832 + MIR SINE MIR 6 256 -6 193 279 98 0 chr1 64159527 64159588 -178504765 + L2 LINE L2 2994 3060 -212 231 356 10 10 chr1 64159962 64160063 -178504290 + L2 LINE L2 2871 2971 -342 636 314 106 29 chr1 64160602 64161045 -178503308 + LTR33 LTR ERVL 45 521 0 290 320 53 37 chr1 64161428 64161672 -178502681 + MIR SINE MIR 1 248 -14 529 237 0 0 chr1 64161762 64161880 -178502473 - L3 LINE CR1 -205 1372 1255 2413 74 10 0 chr1 64162153 64162452 -178501901 + AluY SINE Alu 1 302 -9 223 265 0 0 chr1 64162774 64162823 -178501530 + (CA)n Simple_repeat Simple_repeat 2 50 0 410 272 32 31 chr1 64163265 64163657 -178500696 + L1M4c LINE L1 2253 2648 -3734 587 267 43 71 chr1 64163832 64164087 -178500266 - MIR SINE MIR -11 251 4 259 243 41 89 chr1 64165718 64165887 -178498466 - L1ME4a LINE L1 -94 6027 5867 218 264 204 51 chr1 64165908 64166124 -178498229 - L2 LINE L2 -1324 1990 1742 296 301 19 10 chr1 64166317 64166420 -178497933 - MIR SINE MIR -127 135 32 1022 195 73 19 chr1 64167931 64168363 -178495990 + MER39 LTR ERV1 3 544 -163 224 300 176 29 chr1 64168504 64168714 -178495639 + L2 LINE L2 9 249 -3065 * 738 240 16 49 chr1 64168685 64168931 -178495422 + L2 LINE L2 3076 3313 0 185 310 214 48 chr1 64169593 64169780 -178494573 + L3 LINE CR1 1318 1535 -42 182 156 22 0 chr1 64169932 64169977 -178494376 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 301 186 224 51 chr1 64170455 64170611 -178493742 - MIR SINE MIR -72 190 8 938 301 136 11 chr1 64171262 64172054 -178492299 - L2 LINE L2 0 3313 2436 263 273 96 91 chr1 64172064 64172251 -178492102 - L2 LINE L2 -1078 2236 2049 2103 135 0 3 chr1 64172457 64172768 -178491585 + AluSx SINE Alu 2 311 -1 259 178 0 0 chr1 64172876 64172921 -178491432 + L2 LINE L2 3251 3295 -18 189 107 0 0 chr1 64173383 64173411 -178490942 + (ATG)n Simple_repeat Simple_repeat 1 28 0 910 230 11 0 chr1 64173420 64173611 -178490742 - MIR SINE MIR -1 261 69 246 279 0 59 chr1 64173647 64173715 -178490638 - L2 LINE L2 -2 3270 3207 201 74 0 0 chr1 64173829 64173856 -178490497 + (A)n Simple_repeat Simple_repeat 1 27 0 336 259 6 167 chr1 64173856 64174030 -178490323 - MIR3 SINE MIR -31 177 32 187 402 22 0 chr1 64174182 64174274 -178490079 - MIR3 SINE MIR -21 187 94 26 30 0 0 chr1 64175333 64175366 -178488987 + AT_rich Low_complexity Low_complexity 1 33 0 316 273 205 29 chr1 64175375 64175551 -178488802 - MIR SINE MIR -29 233 36 329 235 28 18 chr1 64176001 64176118 -178488235 - MIR SINE MIR -62 146 41 565 260 119 27 chr1 64176180 64176399 -178487954 - MIR SINE MIR -6 256 18 357 335 52 31 chr1 64177171 64177197 -178487156 + MIR SINE MIR 23 47 -215 1493 192 120 27 chr1 64177197 64177530 -178486823 - MLT1A1 LTR MaLR 0 365 2 357 335 52 31 chr1 64177530 64177697 -178486656 + MIR SINE MIR 47 220 -42 218 119 83 24 chr1 64177723 64177807 -178486546 + (TA)n Simple_repeat Simple_repeat 2 90 0 417 363 78 23 chr1 64177846 64178102 -178486251 - L3 LINE CR1 -15 1562 1293 349 288 72 22 chr1 64178107 64178246 -178486107 - MIR SINE MIR -6 256 111 238 233 50 0 chr1 64178253 64178313 -178486040 - MIR SINE MIR -82 180 118 2640 233 95 39 chr1 64178481 64179428 -178484925 + L1ME1 LINE L1 5188 6162 -4 880 264 82 28 chr1 64179859 64180211 -178484142 - L2 LINE L2 -1 3312 2942 318 343 52 8 chr1 64180341 64180475 -178483878 - MIR SINE MIR -74 188 49 185 229 0 0 chr1 64180552 64180587 -178483766 + MIR SINE MIR 77 111 -151 340 83 14 139 chr1 64180606 64180629 -178483724 - AluJo SINE Alu -165 137 113 381 22 0 0 chr1 64180629 64180675 -178483678 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 340 83 14 139 chr1 64180675 64180723 -178483630 - AluJo SINE Alu -189 113 75 732 133 0 0 chr1 64180723 64180821 -178483532 - AluJo SINE Alu -213 99 2 499 282 123 59 chr1 64180912 64181270 -178483083 - MLT1J1 LTR MaLR -3 443 63 189 300 92 62 chr1 64181404 64181534 -178482819 + L2 LINE L2 2793 2926 -388 398 283 22 0 chr1 64181700 64181792 -178482561 + MIR SINE MIR 18 111 -151 1304 204 11 2 chr1 64181792 64182079 -178482274 - MLT1A1 LTR MaLR -2 363 13 283 51 0 0 chr1 64182195 64182234 -178482119 + MADE1 DNA Mariner 42 80 0 254 349 35 0 chr1 64182300 64182386 -178481967 + L2 LINE L2 3225 3313 0 465 301 192 0 chr1 64182489 64182708 -178481645 + MIR SINE MIR 2 262 0 371 252 47 47 chr1 64183648 64183775 -178480578 - MIR SINE MIR -116 146 20 445 222 0 4 chr1 64184473 64184627 -178479726 - MER20 DNA MER1_type -12 207 1 413 226 78 17 chr1 64184627 64184742 -178479611 + L2 LINE L2 3148 3269 -3 185 296 68 57 chr1 64184917 64185005 -178479348 + L2 LINE L2 3004 3092 -180 368 300 163 18 chr1 64185059 64185286 -178479067 + MIR SINE MIR 3 262 0 280 339 35 17 chr1 64185275 64185390 -178478963 + L2 LINE L2 3176 3292 -21 * 262 330 34 0 chr1 64185485 64185573 -178478780 - MIR3 SINE MIR -50 158 68 506 281 41 12 chr1 64186011 64186182 -178478171 + MIR SINE MIR 79 254 -8 544 302 79 5 chr1 64186408 64186623 -178477730 + MIR SINE MIR 20 250 -12 207 255 43 0 chr1 64186655 64186702 -178477651 + L2 LINE L2 3224 3272 0 233 279 171 31 chr1 64186726 64186855 -178477498 + MIR3 SINE MIR 1 147 -61 803 264 31 31 chr1 64187278 64187505 -178476848 - MIR SINE MIR -33 229 3 299 267 47 12 chr1 64187505 64187584 -178476769 - MIR SINE MIR -91 117 36 345 237 75 71 chr1 64187912 64188125 -178476228 + MIR SINE MIR 51 262 0 2204 192 8 3 chr1 64188160 64188520 -178475833 + MLT1A1 LTR MaLR 4 365 0 200 337 71 20 chr1 64188533 64188631 -178475722 - L2 LINE L2 -47 3225 3123 211 327 0 0 chr1 64189293 64189348 -178475005 + L2 LINE L2 3166 3220 -52 687 204 120 12 chr1 64189598 64189765 -178474588 + MIR SINE MIR 4 188 -74 516 262 108 114 chr1 64191293 64191391 -178472962 + L2 LINE L2 2932 3029 -243 240 86 0 0 chr1 64191391 64191426 -178472927 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 516 262 108 114 chr1 64191426 64191670 -178472683 + L2 LINE L2 3029 3272 0 197 160 0 40 chr1 64192996 64193046 -178471307 + (TATG)n Simple_repeat Simple_repeat 2 49 0 442 225 146 20 chr1 64193049 64193200 -178471153 - MIR SINE MIR -44 218 49 2894 12 0 12 chr1 64193517 64193839 -178470514 - AluYb8 SINE Alu 0 318 1 506 309 52 13 chr1 64193845 64194075 -178470278 - L1ME4a LINE L1 -2 6119 5881 3965 129 30 0 chr1 64194521 64195127 -178469226 - L1MA5 LINE L1 -2 6298 5675 797 237 60 11 chr1 64195127 64195339 -178469014 + MLT1J2 LTR MaLR 31 271 -175 201 250 50 25 chr1 64196426 64196506 -178467847 + L2 LINE L2 2976 3057 -215 374 271 36 36 chr1 64196993 64197133 -178467220 + MIR SINE MIR 77 216 -46 496 327 60 5 chr1 64197398 64197628 -178466725 + MIR SINE MIR 14 254 -8 281 309 64 27 chr1 64198437 64198547 -178465806 + L2 LINE L2 3143 3256 -16 197 185 74 37 chr1 64200348 64200402 -178463951 - L2 LINE L2 -35 3237 3182 514 271 26 19 chr1 64200500 64200655 -178463698 - L1ME4a LINE L1 -2152 5656 5501 2653 142 14 5 chr1 64200657 64201072 -178463281 + MSTB1 LTR MaLR 1 419 -13 641 286 35 39 chr1 64201131 64201386 -178462967 - MIR SINE MIR -1 261 8 256 299 55 39 chr1 64201687 64201814 -178462539 + MIR SINE MIR 3 132 -76 2104 105 27 0 chr1 64202136 64202430 -178461923 - AluSg SINE Alu -7 303 2 254 231 0 123 chr1 64202466 64202596 -178461757 - MIR SINE MIR -7 255 142 670 326 45 0 chr1 64202694 64202939 -178461414 + MIR SINE MIR 7 262 0 251 336 182 0 chr1 64203248 64203358 -178460995 + L2 LINE L2 3143 3272 0 26 0 0 0 chr1 64204763 64204789 -178459564 + AT_rich Low_complexity Low_complexity 1 26 0 234 273 244 12 chr1 64204996 64205168 -178459185 + MIR SINE MIR 36 247 -15 399 207 71 64 chr1 64205709 64205849 -178458504 + MER5B DNA MER1_type 4 144 -34 1298 228 55 0 chr1 64206381 64206712 -178457641 - AluJo SINE Alu 0 352 6 6745 53 25 1 chr1 64206930 64207988 -178456365 + L1PA7 LINE L1 5082 6160 0 940 261 37 5 chr1 64208350 64208602 -178455751 - MIR SINE MIR 0 262 6 239 287 65 19 chr1 64208690 64208798 -178455555 + L2 LINE L2 3169 3281 -32 874 174 12 41 chr1 64208893 64209065 -178455288 - MER5A DNA MER1_type 0 189 23 268 333 0 0 chr1 64209445 64209529 -178454824 - L2 LINE L2 -49 3223 3140 3946 168 23 9 chr1 64209638 64210339 -178454014 + MER50 LTR ERV1 1 711 -23 493 298 37 38 chr1 64210340 64210748 -178453605 - L2 LINE L2 -226 3087 2625 869 253 51 36 chr1 64211157 64211410 -178452943 - MIR SINE MIR 0 262 6 371 343 0 0 chr1 64211477 64211576 -178452777 - L2 LINE L2 -49 3223 3125 206 298 0 0 chr1 64212006 64212063 -178452290 + L2 LINE L2 3228 3284 -29 275 336 58 0 chr1 64212093 64212197 -178452156 + MIR SINE MIR 45 154 -108 237 196 0 0 chr1 64212291 64212342 -178452011 + (TTA)n Simple_repeat Simple_repeat 3 53 0 708 246 15 97 chr1 64212482 64212779 -178451574 + MIR SINE MIR 1 262 0 387 282 83 39 chr1 64213714 64213870 -178450483 - MIR3 SINE MIR -16 192 30 273 256 51 13 chr1 64214141 64214219 -178450134 - MIR SINE MIR -79 183 103 277 155 35 0 chr1 64214420 64214478 -178449875 - L1MD1 LINE L1 -1 6241 6182 557 290 60 5 chr1 64214574 64214774 -178449579 + MIR SINE MIR 8 218 -44 267 152 0 0 chr1 64214816 64214862 -178449491 + (TG)n Simple_repeat Simple_repeat 1 46 0 928 219 6 0 chr1 64215913 64216077 -178448276 - FRAM SINE Alu 0 166 2 511 377 66 4 chr1 64216713 64216941 -178447412 + L2 LINE L2 3027 3268 -4 241 273 47 55 chr1 64216966 64217094 -178447259 - MIR SINE MIR -33 229 103 189 0 0 0 chr1 64217916 64217937 -178446416 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1226 181 5 9 chr1 64217940 64218156 -178446197 + AluJb SINE Alu 92 306 -6 1162 273 65 25 chr1 64218171 64218651 -178445702 - L1MC4 LINE L1 -30 8012 7514 668 249 82 75 chr1 64218653 64218845 -178445508 - L1MC4 LINE L1 -631 7411 7222 3033 74 0 6 chr1 64218845 64219210 -178445143 - THE1B LTR MaLR -1 363 1 668 249 82 75 chr1 64219210 64219430 -178444923 - L1MC4 LINE L1 -820 7222 6996 181 347 63 11 chr1 64219613 64219708 -178444645 + L2 LINE L2 3121 3220 -52 253 208 94 52 chr1 64219895 64219991 -178444362 + MLT1J LTR MaLR 412 511 0 464 208 192 17 chr1 64220069 64220189 -178444164 - MER5A DNA MER1_type -29 160 20 233 323 31 21 chr1 64220236 64220332 -178444021 + L2 LINE L2 2932 3028 -244 * 1422 293 112 60 chr1 64220330 64220968 -178443385 - L2 LINE L2 -2 3311 2707 1194 221 48 8 chr1 64220968 64221217 -178443136 - MIR SINE MIR -1 261 3 1422 293 112 60 chr1 64221217 64221906 -178442447 - L2 LINE L2 -606 2707 1914 605 261 164 4 chr1 64221942 64222168 -178442185 + MLT1J LTR MaLR 34 295 -216 808 251 106 4 chr1 64222215 64222450 -178441903 - MIR SINE MIR -1 261 3 370 307 100 21 chr1 64222461 64222702 -178441651 - L2 LINE L2 -2077 1237 978 203 121 0 0 chr1 64222805 64222838 -178441515 + L2 LINE L2 3281 3313 0 468 0 0 0 chr1 64222913 64222965 -178441388 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 416 291 114 6 chr1 64223513 64223688 -178440665 - MIR SINE MIR -48 214 21 657 241 38 100 chr1 64223730 64224099 -178440254 - MER7A DNA MER2_type -1 345 2 389 366 14 0 chr1 64225134 64225276 -178439077 + MIR3 SINE MIR 39 182 -26 362 285 119 10 chr1 64226782 64226975 -178437378 + MIR SINE MIR 23 236 -26 268 307 146 15 chr1 64227240 64227377 -178436976 + LTR33A LTR ERVL 1 155 -368 578 283 48 0 chr1 64227809 64227996 -178436357 + LTR33A LTR ERVL 328 523 0 237 200 40 0 chr1 64228042 64228092 -178436261 + L1ME4a LINE L1 5596 5647 -474 353 284 215 11 chr1 64228106 64228367 -178435986 + L2 LINE L2 2990 3303 -10 12964 31 27 0 chr1 64228370 64230560 -178433793 + L1PA4 LINE L1 3942 6155 0 249 248 59 40 chr1 64230654 64230755 -178433598 + L1ME4a LINE L1 5694 5796 -2012 280 302 147 0 chr1 64230785 64230914 -178433439 + MER5A DNA MER1_type 2 149 -40 249 190 74 123 chr1 64231113 64231276 -178433077 + L1ME4a LINE L1 5964 6118 -3 726 237 36 97 chr1 64232470 64232631 -178431722 - MIR SINE MIR 0 262 124 2271 96 0 17 chr1 64232631 64232933 -178431420 + AluSq SINE Alu 1 297 -16 726 237 36 97 chr1 64232933 64233049 -178431304 - MIR SINE MIR -138 124 2 320 242 66 0 chr1 64233366 64233457 -178430896 + MIR SINE MIR 120 216 -46 1088 117 0 47 chr1 64233895 64234043 -178430310 + AluSg/x SINE Alu 133 286 -24 366 42 0 0 chr1 64234043 64234091 -178430262 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 334 136 17 0 chr1 64234096 64234155 -178430198 + L1MB8 LINE L1 6117 6176 -2 1088 117 0 47 chr1 64234155 64234171 -178430182 + AluSg/x SINE Alu 290 295 -15 349 207 0 11 chr1 64234171 64234229 -178430124 - MER58 DNA MER1_type -112 229 173 2172 148 108 35 chr1 64234229 64234518 -178429835 - MSTB2 LTR MaLR 0 457 126 2361 84 0 0 chr1 64234518 64234816 -178429537 + AluY SINE Alu 1 298 -13 2172 148 108 35 chr1 64234816 64234952 -178429401 - MSTB2 LTR MaLR -331 126 1 349 207 0 11 chr1 64234952 64234978 -178429375 - MER58 DNA MER1_type -168 173 148 219 336 122 14 chr1 64235021 64235235 -178429118 + MIR SINE MIR 20 256 -6 337 304 28 116 chr1 64235261 64235511 -178428842 - L2 LINE L2 -44 3228 3001 438 286 39 55 chr1 64235511 64235693 -178428660 + MIR SINE MIR 20 198 -64 344 293 88 39 chr1 64235959 64236164 -178428189 - MIR SINE MIR -13 249 35 * 378 358 0 0 chr1 64236130 64236253 -178428100 - L3 LINE CR1 -25 1552 1430 1399 167 0 21 chr1 64236299 64236538 -178427815 - AluJo SINE Alu -23 289 56 371 291 184 7 chr1 64236578 64236719 -178427634 + MIR SINE MIR 47 212 -50 1011 303 14 18 chr1 64236807 64237237 -178427116 + L1MC4a LINE L1 5531 5963 -158 1018 291 145 23 chr1 64237455 64238249 -178426104 + L2 LINE L2 2390 3282 -31 360 216 14 14 chr1 64238254 64238393 -178425960 + GA-rich Low_complexity Low_complexity 3 141 0 1668 63 0 5 chr1 64238638 64238844 -178425509 + AluY SINE Alu 100 304 -7 308 197 0 13 chr1 64238915 64238991 -178425362 + CT-rich Low_complexity Low_complexity 2 76 0 391 290 81 68 chr1 64240337 64240432 -178423921 + MIR SINE MIR 12 104 -158 2018 117 13 29 chr1 64240432 64240739 -178423614 - AluSq SINE Alu -7 306 5 391 290 81 68 chr1 64240739 64240891 -178423462 + MIR SINE MIR 104 262 0 211 367 28 0 chr1 64241187 64241296 -178423057 - L3 LINE CR1 -207 1370 1259 296 302 78 26 chr1 64241440 64241556 -178422797 - L2 LINE L2 -1 3271 3150 505 210 57 16 chr1 64241612 64241736 -178422617 - MIR3 SINE MIR -45 163 35 181 234 128 64 chr1 64242118 64242212 -178422141 + MIR SINE MIR 85 184 -78 282 239 69 100 chr1 64242451 64242635 -178421718 + MIR SINE MIR 30 204 -58 485 302 22 0 chr1 64242963 64243102 -178421251 + MIR SINE MIR 26 167 -95 820 119 0 94 chr1 64243358 64243518 -178420835 + FRAM SINE Alu 31 175 -1 542 204 22 88 chr1 64244049 64244275 -178420078 - L1ME2 LINE L1 -10 6154 5944 * 5707 182 37 19 chr1 64244253 64245535 -178418818 - L1MC1 LINE L1 0 6613 5315 2043 194 32 34 chr1 64245535 64245978 -178418375 - MSTB2 LTR MaLR 0 457 16 7715 227 31 7 chr1 64245984 64248378 -178415975 - L1MC1 LINE L1 -1109 5317 2861 848 58 0 91 chr1 64248378 64248499 -178415854 - AluSq SINE Alu -114 199 90 1213 300 0 0 chr1 64248501 64248851 -178415502 - L1MC1 LINE L1 -3588 2838 2489 * 3129 180 63 3 chr1 64248843 64249411 -178414942 - L1MC1 LINE L1 -5822 604 3 2178 201 40 34 chr1 64249402 64249877 -178414476 - L1ME2 LINE L1 -197 6247 5767 * 2130 89 35 0 chr1 64249877 64250039 -178414314 - AluSg SINE Alu -18 292 114 369 0 0 0 chr1 64250039 64250080 -178414273 + (TG)n Simple_repeat Simple_repeat 2 42 0 2130 89 35 0 chr1 64250080 64250199 -178414154 - AluSg SINE Alu -196 114 1 2178 201 40 34 chr1 64250199 64250255 -178414098 - L1ME2 LINE L1 -677 5767 5713 251 236 42 28 chr1 64250431 64250503 -178413850 - MIR SINE MIR 0 262 190 223 340 200 20 chr1 64250507 64250707 -178413646 - MIR SINE MIR -6 256 21 753 301 24 16 chr1 64251156 64251405 -178412948 + MIR SINE MIR 12 262 0 361 224 51 10 chr1 64251560 64251658 -178412695 - MIR SINE MIR -75 187 86 207 0 0 0 chr1 64251702 64251725 -178412628 + (CAA)n Simple_repeat Simple_repeat 2 24 0 321 336 23 8 chr1 64251934 64252065 -178412288 + MIR3 SINE MIR 39 171 -37 1745 129 0 40 chr1 64252373 64252651 -178411702 - AluSx SINE Alu -18 294 28 26 0 0 0 chr1 64252655 64252681 -178411672 + AT_rich Low_complexity Low_complexity 1 26 0 589 299 26 59 chr1 64252701 64252972 -178411381 + L2 LINE L2 2699 2960 -354 352 325 79 8 chr1 64253012 64253138 -178411215 + L2 LINE L2 3125 3259 -13 247 316 13 0 chr1 64254123 64254202 -178410151 + MIR SINE MIR 69 148 -114 2320 120 32 35 chr1 64254312 64254686 -178409667 + THE1C LTR MaLR 3 375 0 1471 201 22 60 chr1 64254976 64255345 -178409008 - MLT1A1 LTR MaLR 0 365 11 204 274 30 143 chr1 64255417 64255585 -178408768 + L2 LINE L2 2899 3047 -225 205 323 60 30 chr1 64255709 64255842 -178408511 - MIR SINE MIR -113 149 13 327 259 42 90 chr1 64256349 64256504 -178407849 - MIR3 SINE MIR -27 181 35 527 250 160 0 chr1 64256504 64256660 -178407693 - MER5A DNA MER1_type 0 189 9 328 282 10 19 chr1 64257354 64257457 -178406896 + MIR SINE MIR 107 208 -54 2415 73 3 7 chr1 64257530 64257830 -178406523 + AluY SINE Alu 1 299 -12 321 329 49 49 chr1 64257831 64257974 -178406379 + MIR3 SINE MIR 1 143 -65 228 336 80 40 chr1 64258220 64258345 -178406008 - L2 LINE L2 -6 3266 3137 432 303 68 41 chr1 64258538 64258832 -178405521 + MLT1J LTR MaLR 172 473 -38 410 299 61 48 chr1 64258917 64259148 -178405205 - MIR SINE MIR -9 253 20 259 308 80 83 chr1 64260157 64260469 -178403884 + L2 LINE L2 2878 3188 -84 333 68 0 0 chr1 64261207 64261251 -178403102 + (CAT)n Simple_repeat Simple_repeat 2 45 0 1507 200 44 0 chr1 64261253 64261400 -178402953 - AluJo SINE Alu -30 282 143 276 30 0 0 chr1 64261400 64261433 -178402920 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1507 200 44 0 chr1 64261433 64261555 -178402798 - AluJo SINE Alu -169 143 1 283 261 210 40 chr1 64261928 64262104 -178402249 - MIR SINE MIR -34 228 23 790 244 101 32 chr1 64262417 64262859 -178401494 + LTR33 LTR ERVL 10 521 0 261 250 36 0 chr1 64262912 64262968 -178401385 - MIR3 SINE MIR -14 194 137 498 312 88 28 chr1 64263004 64263219 -178401134 - MIR SINE MIR -15 247 20 762 265 43 5 chr1 64263367 64263578 -178400775 - MER20 DNA MER1_type 0 219 1 360 298 33 7 chr1 64264242 64264393 -178399960 + L1ME4a LINE L1 5964 6118 -3 398 296 116 42 chr1 64264598 64264814 -178399539 + MLT1K LTR MaLR 190 421 -167 2268 138 12 21 chr1 64265080 64265420 -178398933 - MER1B DNA MER1_type 0 337 1 619 55 33 0 chr1 64265435 64265526 -178398827 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 465 291 2 1 chr1 64265583 64265741 -178398612 - L1ME3A LINE L1 -219 5951 5794 214 227 67 76 chr1 64265818 64265937 -178398416 - MIR SINE MIR -18 244 127 717 264 136 0 chr1 64266106 64266326 -178398027 + MIR SINE MIR 13 262 0 304 282 122 13 chr1 64266377 64266533 -178397820 + L2 LINE L2 2594 2766 -548 341 306 105 64 chr1 64266580 64266953 -178397400 + L2 LINE L2 2882 3269 -3 471 341 74 0 chr1 64267487 64267704 -178396649 + MIR SINE MIR 19 251 -11 446 308 133 13 chr1 64268100 64268334 -178396019 + MLT1J LTR MaLR 120 381 -130 330 320 125 47 chr1 64268779 64269076 -178395277 - L3 LINE CR1 -83 1494 1175 233 321 62 0 chr1 64269113 64269194 -178395159 + MIR3 SINE MIR 71 156 -52 197 260 20 0 chr1 64269433 64269483 -178394870 + MIR3 SINE MIR 151 201 -7 1576 257 75 22 chr1 64269557 64270052 -178394301 + LTR33 LTR ERVL 1 521 0 181 236 57 113 chr1 64270808 64270914 -178393439 - MIR SINE MIR -55 207 108 614 270 142 10 chr1 64272140 64272571 -178391782 - LTR33 LTR ERVL 0 521 1 1932 282 93 21 chr1 64273049 64273706 -178390647 - L2 LINE L2 -568 2746 2043 2138 105 28 0 chr1 64273967 64274253 -178390100 - AluSq SINE Alu -19 294 1 358 246 97 18 chr1 64274329 64274443 -178389910 - L2 LINE L2 0 3313 3191 197 284 137 21 chr1 64274473 64274568 -178389785 + MIR SINE MIR 50 155 -107 1756 178 17 84 chr1 64274568 64274985 -178389368 - MLT1B LTR MaLR -1 389 1 278 235 83 83 chr1 64275115 64275247 -178389106 + MIR SINE MIR 58 189 -73 332 231 71 6 chr1 64275411 64275525 -178388828 - MIR SINE MIR -42 220 97 483 332 36 40 chr1 64276180 64276403 -178387950 + MIR SINE MIR 25 246 -16 186 340 78 58 chr1 64276742 64276933 -178387420 - L2 LINE L2 -1 3271 3077 * 518 285 76 20 chr1 64276916 64277141 -178387212 + MIR SINE MIR 24 261 -1 196 229 46 0 chr1 64277194 64277303 -178387050 + (TA)n Simple_repeat Simple_repeat 2 115 0 2376 67 10 20 chr1 64277662 64277961 -178386392 + AluSp SINE Alu 1 296 -17 585 337 29 16 chr1 64278047 64278290 -178386063 + MIR SINE MIR 17 262 0 1451 166 57 64 chr1 64278565 64278879 -178385474 + AluJb SINE Alu 1 312 0 419 331 91 36 chr1 64279065 64279340 -178385013 - L2 LINE L2 0 3313 3024 255 372 132 0 chr1 64279423 64279552 -178384801 + L2 LINE L2 3121 3266 -6 219 170 0 0 chr1 64280216 64280263 -178384090 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 391 209 239 12 chr1 64280328 64280491 -178383862 - MIR SINE MIR -17 245 46 240 326 51 31 chr1 64280661 64280759 -178383594 + L2 LINE L2 3141 3240 -32 383 315 72 38 chr1 64281304 64281539 -178382814 + MIR SINE MIR 20 262 0 243 324 72 43 chr1 64281642 64281781 -178382572 - L2 LINE L2 -5 3267 3125 238 293 12 12 chr1 64281837 64281919 -178382434 + MIR SINE MIR 68 149 -59 682 272 173 48 chr1 64282185 64282634 -178381719 + MLT1H LTR MaLR 1 545 -4 486 248 28 0 chr1 64283034 64283143 -178381210 - MIR SINE MIR -71 191 80 2494 217 13 13 chr1 64283978 64284512 -178379841 + MER74A LTR ERVL 1 534 -24 2673 126 48 10 chr1 64284577 64284989 -178379364 - MSTA LTR MaLR 0 428 1 1731 136 43 54 chr1 64284997 64285404 -178378949 + L1MCa LINE L1 1328 1878 -4548 539 256 186 6 chr1 64285607 64285763 -178378590 - MER5A DNA MER1_type 0 189 6 235 233 41 14 chr1 64285763 64285775 -178378578 + MER3 DNA MER1_type 36 49 -160 308 177 25 38 chr1 64285775 64285854 -178378499 - MER3 DNA MER1_type 0 209 132 775 117 0 42 chr1 64285861 64285981 -178378372 + AluSg/x SINE Alu 189 303 -7 592 215 0 0 chr1 64286017 64286124 -178378229 - MER3 DNA MER1_type -93 116 10 1830 189 147 76 chr1 64286255 64286784 -178377569 + MLT1F1 LTR MaLR 1 567 0 684 242 81 10 chr1 64286784 64286982 -178377371 - MIR SINE MIR -43 219 8 348 176 59 209 chr1 64287074 64287142 -178377211 + MER5B DNA MER1_type 17 94 -84 1533 38 0 5 chr1 64287142 64287327 -178377026 + AluY SINE Alu 123 306 -5 348 176 59 209 chr1 64287327 64287445 -178376908 + MER5B DNA MER1_type 94 175 -3 206 281 31 16 chr1 64287494 64287558 -178376795 + MER5A DNA MER1_type 124 188 -1 3713 72 5 5 chr1 64288307 64288751 -178375602 + MLT2A1 LTR ERVL 1 444 0 610 221 22 7 chr1 64288973 64289109 -178375244 - MER5B DNA MER1_type -16 162 25 198 238 48 16 chr1 64289054 64289117 -178375236 + MER5A DNA MER1_type 109 173 -16 * 203 286 193 8 chr1 64289420 64289539 -178374814 + MER5B DNA MER1_type 3 143 -35 299 233 68 0 chr1 64290398 64290471 -178373882 + HAL1 LINE L1 54 131 -2376 332 344 95 14 chr1 64290475 64290696 -178373657 + HAL1 LINE L1 432 670 -1837 7086 202 18 4 chr1 64290832 64292630 -178371723 - L1PA15-16 LINE L1 -5466 1383 12 1115 286 117 0 chr1 64292649 64292999 -178371354 + L2 LINE L2 2224 2614 -700 472 304 88 21 chr1 64293352 64293546 -178370807 + MIR SINE MIR 11 217 -45 250 303 178 46 chr1 64295319 64295471 -178368882 + MIR SINE MIR 18 189 -73 360 0 0 0 chr1 64296728 64296768 -178367585 + (TG)n Simple_repeat Simple_repeat 2 41 0 821 60 30 15 chr1 64296771 64296904 -178367449 + (GAAA)n Simple_repeat Simple_repeat 4 138 0 1285 265 46 88 chr1 64297340 64297967 -178366386 + L1MCb LINE L1 1 601 -5444 1067 242 68 3 chr1 64298024 64298346 -178366007 + L1MCb LINE L1 571 913 -5132 2965 162 24 61 chr1 64298668 64299523 -178364830 + LTR1 LTR ERV1 1 785 0 1738 155 90 31 chr1 64301030 64301554 -178362799 - MLT2A2 LTR ERVL 0 554 1 2819 7 0 0 chr1 64301890 64302196 -178362157 + AluYa5 SINE Alu 1 306 -5 827 229 17 6 chr1 64302335 64302510 -178361843 + MER45A DNA AcHobo 1 177 -1 871 162 0 69 chr1 64302756 64302929 -178361424 - MSTD LTR MaLR 0 396 236 298 329 134 51 chr1 64303273 64303565 -178360788 - L2 LINE L2 -24 3248 2933 353 326 0 0 chr1 64303627 64303719 -178360634 - L2 LINE L2 -37 3276 3185 242 259 102 37 chr1 64303735 64303843 -178360510 + MLT1G1 LTR MaLR 16 130 -465 1309 231 177 19 chr1 64304043 64304528 -178359825 - MLT1G1 LTR MaLR -12 583 22 267 162 73 29 chr1 64304580 64304648 -178359705 + MLT1H LTR MaLR 454 524 -25 1281 160 5 0 chr1 64304930 64305136 -178359217 + AluJo SINE Alu 68 274 -38 1100 92 0 6 chr1 64305136 64305300 -178359053 + (GGAA)n Simple_repeat Simple_repeat 2 164 0 2113 142 0 13 chr1 64305412 64305728 -178358625 + AluSq SINE Alu 1 312 -1 4361 165 56 8 chr1 64306525 64307384 -178356969 - MER54A LTR ERVL 0 901 2 433 250 62 131 chr1 64307690 64307934 -178356419 - MIR SINE MIR -31 231 5 934 169 4 84 chr1 64308030 64308057 -178356296 + L1MC3 LINE L1 7565 7593 -192 1981 137 53 0 chr1 64308057 64308342 -178356011 + AluSx SINE Alu 1 300 -12 934 169 4 84 chr1 64308342 64308551 -178355802 + L1MC3 LINE L1 7593 7782 -3 373 219 37 0 chr1 64308710 64308792 -178355561 + LTR16C LTR ERVL 407 491 0 561 300 76 38 chr1 64309265 64309608 -178354745 - MLT1I LTR MaLR -1 408 53 180 0 0 0 chr1 64309812 64309832 -178354521 + (A)n Simple_repeat Simple_repeat 1 20 0 524 281 62 23 chr1 64310486 64310746 -178353607 - MLT1L LTR MaLR -221 394 125 5885 189 23 10 chr1 64311290 64313167 -178351186 + L1MB1 LINE L1 4001 5903 -265 477 333 110 39 chr1 64315375 64315921 -178348432 + L1MEd LINE L1 671 1255 -4864 1710 201 3 19 chr1 64315982 64316296 -178348057 + AluJb SINE Alu 3 311 -1 381 334 107 36 chr1 64316313 64316654 -178347699 + HAL1b LINE L1 327 1765 -646 203 0 0 36 chr1 64316678 64316706 -178347647 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2130 104 0 46 chr1 64316785 64317111 -178347242 + AluY SINE Alu 1 311 0 189 0 0 0 chr1 64317944 64317965 -178346388 + (T)n Simple_repeat Simple_repeat 1 21 0 22 56 0 0 chr1 64318044 64318080 -178346273 + AT_rich Low_complexity Low_complexity 1 36 0 543 286 75 36 chr1 64319154 64319406 -178344947 - MER115 DNA AcHobo -72 621 360 956 224 0 10 chr1 64319553 64319754 -178344599 - MLT1C LTR MaLR 0 467 269 194 193 35 35 chr1 64320448 64320505 -178343848 - MER5A DNA MER1_type -120 69 13 250 294 143 0 chr1 64320524 64320636 -178343717 + MIR SINE MIR 34 159 -62 428 189 0 0 chr1 64320781 64320871 -178343482 + L1MA8 LINE L1 6197 6286 -5 2336 151 44 22 chr1 64322138 64322634 -178341719 + L1MA7 LINE L1 5734 6240 -51 1414 226 23 3 chr1 64323293 64323602 -178340751 + MLT1H LTR MaLR 9 323 -226 279 275 29 0 chr1 64324214 64324283 -178340070 + polypurine Low_complexity Low_complexity 5 75 0 28 29 0 0 chr1 64324533 64324568 -178339785 + AT_rich Low_complexity Low_complexity 1 35 0 557 154 19 0 chr1 64324875 64324979 -178339374 - MLT1C LTR MaLR -361 106 1 325 225 0 113 chr1 64325066 64325210 -178339143 + HAL1 LINE L1 2212 2338 -169 1638 126 4 0 chr1 64325210 64325441 -178338912 + AluSg/x SINE Alu 81 312 0 325 225 0 113 chr1 64325441 64325456 -178338897 + HAL1 LINE L1 2338 2353 -154 294 141 14 84 chr1 64325456 64325501 -178338852 + LTR67 LTR ERVL 492 532 -25 1419 230 100 66 chr1 64325501 64326032 -178338321 + MLT1H LTR MaLR 1 549 0 294 141 14 84 chr1 64326032 64326057 -178338296 + LTR67 LTR ERVL 532 557 0 2883 3 0 0 chr1 64326547 64326858 -178337495 - AluYa5 SINE Alu 0 311 1 845 172 21 47 chr1 64327384 64327576 -178336777 + LTR41 LTR ERVL 1 187 -586 779 222 48 77 chr1 64327723 64328034 -178336319 + LTR41 LTR ERVL 465 766 -7 982 168 0 19 chr1 64328101 64328262 -178336091 - FRAM SINE Alu -24 152 1 532 257 143 26 chr1 64328269 64328534 -178335819 + L1ME3A LINE L1 5621 5916 -254 425 254 169 62 chr1 64330024 64330379 -178333974 + LTR33A LTR ERVL 122 514 -9 2364 131 16 11 chr1 64330475 64330856 -178333497 + L1PA15 LINE L1 5783 6165 0 3692 57 8 10 chr1 64330957 64331446 -178332907 + L1PA7 LINE L1 5667 6154 0 821 214 0 18 chr1 64331446 64331614 -178332739 + FRAM SINE Alu 1 162 -14 603 272 61 10 chr1 64331846 64332060 -178332293 + MIR SINE MIR 40 260 -2 25 0 0 0 chr1 64333172 64333197 -178331156 + AT_rich Low_complexity Low_complexity 1 25 0 943 288 47 23 chr1 64334879 64335357 -178328996 - MLT1G3 LTR MaLR 0 595 21 1103 217 34 8 chr1 64335581 64335844 -178328509 - MLT1H1 LTR MaLR 0 555 286 642 239 48 6 chr1 64335911 64336078 -178328275 - MLT1H1 LTR MaLR -419 176 3 300 252 0 58 chr1 64336511 64336614 -178327739 - L1ME LINE L1 -409 5712 5616 988 181 9 37 chr1 64337680 64337895 -178326458 - MER3 DNA MER1_type 0 209 1 465 298 133 9 chr1 64337995 64338175 -178326178 - MIR SINE MIR 0 262 70 2131 95 0 0 chr1 64338523 64338786 -178325567 + AluSx SINE Alu 29 291 -21 245 185 74 12 chr1 64338997 64339078 -178325275 - L1MA9 LINE L1 -5 6307 6222 * 3588 144 16 15 chr1 64339047 64339712 -178324641 - L1MA7 LINE L1 -91 6200 5535 202 109 65 0 chr1 64341039 64341085 -178323268 + (TA)n Simple_repeat Simple_repeat 2 50 0 216 340 58 13 chr1 64341138 64341294 -178323059 + L3 LINE CR1 1090 1252 -325 21 0 0 0 chr1 64341477 64341498 -178322855 + AT_rich Low_complexity Low_complexity 1 21 0 327 188 0 203 chr1 64342138 64342276 -178322077 + MIR SINE MIR 141 250 -12 207 304 136 40 chr1 64343048 64343173 -178321180 + MIR3 SINE MIR 23 159 -49 298 292 201 0 chr1 64343180 64343324 -178321029 - MIR SINE MIR -27 235 63 24 32 0 0 chr1 64343793 64343824 -178320529 + AT_rich Low_complexity Low_complexity 1 31 0 867 126 0 0 chr1 64343824 64343943 -178320410 - AluSg/x SINE Alu -24 288 170 1764 198 11 48 chr1 64344326 64344705 -178319648 + MLT1A1 LTR MaLR 1 365 0 224 189 9 142 chr1 64345486 64345592 -178318761 - MIR SINE MIR -66 196 105 239 203 17 0 chr1 64345941 64346000 -178318353 - MLT1F1 LTR MaLR -8 559 500 704 342 39 24 chr1 64346004 64346416 -178317937 + L1M3c LINE L1 5 422 -5719 1826 217 49 32 chr1 64347121 64347776 -178316577 + L1M3c LINE L1 960 1625 -4516 300 231 90 22 chr1 64348127 64348261 -178316092 - Charlie4a DNA MER1_type -153 355 213 6507 105 22 10 chr1 64348284 64349357 -178314996 + L1PA13 LINE L1 4697 5782 -381 2578 43 0 7 chr1 64349357 64349657 -178314696 + AluY SINE Alu 3 300 -11 6507 105 22 10 chr1 64349657 64350033 -178314320 + L1PA13 LINE L1 5782 6152 -11 620 190 155 0 chr1 64350055 64350197 -178314156 - Charlie4a DNA MER1_type -299 209 46 1462 142 18 0 chr1 64350271 64350490 -178313863 + AluJb SINE Alu 7 229 -83 1514 165 25 53 chr1 64350596 64350751 -178313602 - AluJb SINE Alu -35 277 132 234 0 0 0 chr1 64350751 64350777 -178313576 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1514 165 25 53 chr1 64350777 64350906 -178313447 - AluJb SINE Alu -180 132 1 579 275 111 29 chr1 64351473 64351934 -178312419 + LTR33 LTR ERVL 2 518 -3 190 283 141 0 chr1 64351988 64352080 -178312273 + MIR SINE MIR 158 262 0 638 194 104 0 chr1 64352163 64352297 -178312056 + MLT1C LTR MaLR 6 153 -314 1354 222 52 13 chr1 64352344 64352650 -178311703 + MLT1C LTR MaLR 142 459 -8 216 313 100 31 chr1 64352696 64352856 -178311497 + L2 LINE L2 2916 3086 -186 370 310 31 0 chr1 64353039 64353168 -178311185 - MIR SINE MIR 0 262 130 776 254 30 17 chr1 64354091 64354323 -178310030 + MIR SINE MIR 14 248 -14 197 346 94 24 chr1 64354427 64354554 -178309799 - L2 LINE L2 -1 3271 3136 576 268 66 30 chr1 64354588 64354786 -178309567 - MIR SINE MIR -51 211 7 251 174 6 234 chr1 64356085 64356126 -178308227 + MIR SINE MIR 77 126 -136 2293 174 42 20 chr1 64356126 64356579 -178307774 - MLT1C LTR MaLR -4 463 1 251 174 6 234 chr1 64356579 64356704 -178307649 + MIR SINE MIR 126 205 -57 223 278 42 14 chr1 64356832 64356904 -178307449 - MIR3 SINE MIR -27 181 108 234 344 11 0 chr1 64357129 64357222 -178307131 - MIR SINE MIR -71 137 44 307 250 104 0 chr1 64357858 64357954 -178306399 - L2 LINE L2 0 3313 3208 221 263 33 61 chr1 64358396 64358530 -178305823 + MIR SINE MIR 15 148 -63 269 287 60 33 chr1 64358562 64358712 -178305641 - MIR SINE MIR -44 218 65 196 210 62 37 chr1 64359315 64359396 -178304957 - L2 LINE L2 -27 3245 3163 2246 44 44 4 chr1 64359552 64359883 -178304470 - AluY SINE Alu 0 342 1 376 256 12 136 chr1 64359883 64360141 -178304212 - MIR SINE MIR 0 262 37 424 164 24 40 chr1 64360141 64360310 -178304043 - L1MA9 LINE L1 -85 6215 6054 1170 268 81 24 chr1 64360515 64360936 -178303417 - LTR16A LTR ERVL -5 445 1 821 245 85 5 chr1 64361369 64361581 -178302772 - MIR SINE MIR -32 230 2 292 281 116 50 chr1 64361693 64361967 -178302386 + L2 LINE L2 2666 3018 -254 181 259 17 0 chr1 64362139 64362197 -178302156 + L2 LINE L2 3207 3265 -7 8369 54 6 1 chr1 64362622 64364258 -178300095 - L1PA6 LINE L1 -164 5990 4350 1699 204 36 0 chr1 64364258 64364567 -178299786 - MSTB1 LTR MaLR -54 378 59 264 224 17 0 chr1 64364567 64364625 -178299728 - MSTB1-int LTR MaLR -1590 61 3 2133 159 58 22 chr1 64364625 64365040 -178299313 - MSTB1 LTR MaLR -2 430 1 191 303 45 0 chr1 64365505 64365571 -178298782 - MIR SINE MIR -83 179 111 409 129 0 0 chr1 64366749 64366811 -178297542 + MSTB1 LTR MaLR 371 432 0 224 273 30 15 chr1 64366816 64366882 -178297471 + L2 LINE L2 3243 3309 -4 2408 60 0 0 chr1 64366964 64367271 -178297082 + AluY SINE Alu 1 307 0 267 370 34 82 chr1 64367584 64368024 -178296329 + L2 LINE L2 2850 3268 -4 366 321 88 6 chr1 64368029 64368188 -178296165 - MIR SINE MIR -71 191 20 289 376 0 0 chr1 64369101 64369266 -178295087 + (TGG)n Simple_repeat Simple_repeat 1 165 0 327 128 0 0 chr1 64370403 64370450 -178293903 + Charlie5 DNA MER1_type 25 71 -2541 664 128 23 15 chr1 64370472 64370605 -178293748 + Charlie5 DNA MER1_type 2469 2602 -10 945 250 82 43 chr1 64371085 64371477 -178292876 - MLT1I LTR MaLR 0 409 3 555 90 0 0 chr1 64372129 64372207 -178292146 + (TA)n Simple_repeat Simple_repeat 2 79 0 511 264 30 24 chr1 64372581 64372748 -178291605 - MLT1L LTR MaLR -18 597 430 2514 70 0 10 chr1 64373395 64373707 -178290646 + AluY SINE Alu 3 311 0 239 217 0 0 chr1 64374125 64374171 -178290182 - MIR SINE MIR -11 251 206 308 253 0 11 chr1 64374417 64374504 -178289849 - MIR SINE MIR -112 150 65 329 335 74 6 chr1 64374609 64374802 -178289551 - MIR SINE MIR -58 204 2 288 279 29 79 chr1 64375210 64375350 -178289003 - MIR SINE MIR -12 250 118 372 22 0 0 chr1 64376269 64376314 -178288039 + (TG)n Simple_repeat Simple_repeat 1 45 0 206 171 0 0 chr1 64376668 64376703 -178287650 - L3 LINE CR1 -1 1576 1542 728 236 16 68 chr1 64376752 64377002 -178287351 - L2 LINE L2 -2 3311 3075 278 274 35 9 chr1 64377169 64377282 -178287071 - MIR SINE MIR -15 247 132 462 321 22 0 chr1 64377318 64377455 -178286898 + MIR SINE MIR 47 186 -76 736 202 62 55 chr1 64377831 64378088 -178286265 - MIR SINE MIR 0 262 4 196 247 91 91 chr1 64378106 64378260 -178286093 + L2 LINE L2 2902 3055 -217 352 257 20 10 chr1 64378584 64378685 -178285668 + MIR SINE MIR 75 176 -86 290 259 227 28 chr1 64378710 64378926 -178285427 - MIR SINE MIR -2 260 2 750 264 56 0 chr1 64379034 64379265 -178285088 - LTR33A LTR ERVL -16 507 264 2289 108 0 0 chr1 64379531 64379818 -178284535 + AluSg SINE Alu 5 291 -19 195 291 55 0 chr1 64380097 64380152 -178284201 + L3 LINE CR1 1501 1558 -19 337 268 24 0 chr1 64381117 64381199 -178283154 + L2 LINE L2 3222 3305 -8 318 236 11 22 chr1 64381724 64381813 -178282540 - MER117 DNA MER1_type -65 132 45 460 285 64 60 chr1 64381890 64382139 -178282214 + MIR SINE MIR 12 261 -1 288 345 34 29 chr1 64382343 64382552 -178281801 - L2 LINE L2 -181 3091 2882 21 0 0 0 chr1 64383561 64383582 -178280771 + AT_rich Low_complexity Low_complexity 1 21 0 423 352 6 0 chr1 64383635 64383814 -178280539 - MIR SINE MIR -2 260 81 2281 189 74 17 chr1 64383979 64384503 -178279850 - MER74A LTR ERVL 0 558 5 205 300 44 0 chr1 64384603 64384693 -178279660 - MIR SINE MIR -167 95 2 232 390 0 0 chr1 64384893 64384970 -178279383 - MIR SINE MIR -154 108 32 213 159 0 23 chr1 64385429 64385473 -178278880 + (TAA)n Simple_repeat Simple_repeat 2 44 0 225 237 191 0 chr1 64385521 64385612 -178278741 - MIR SINE MIR -50 158 49 540 287 11 15 chr1 64386572 64386777 -178277576 + MIR SINE MIR 40 245 -17 26 0 0 0 chr1 64386998 64387024 -178277329 + AT_rich Low_complexity Low_complexity 1 26 0 216 286 0 0 chr1 64387393 64387463 -178276890 - MIR SINE MIR -57 151 82 240 329 93 27 chr1 64387516 64387741 -178276612 + L2 LINE L2 2986 3225 -88 428 317 6 22 chr1 64388157 64388337 -178276016 + MIR SINE MIR 36 212 -50 1760 163 0 38 chr1 64388912 64389232 -178275121 - AluJo SINE Alu -4 308 1 1767 226 20 54 chr1 64389650 64390149 -178274204 + MLT1D LTR MaLR 24 505 0 988 316 63 17 chr1 64390486 64391249 -178273104 + L2 LINE L2 2518 3313 0 225 83 0 0 chr1 64391274 64391310 -178273043 + (TA)n Simple_repeat Simple_repeat 1 36 0 286 360 7 44 chr1 64391310 64391436 -178272917 + MER5A DNA MER1_type 67 189 0 191 286 75 114 chr1 64391671 64391775 -178272578 - L2 LINE L2 -18 3254 3147 1518 177 117 21 chr1 64391775 64392108 -178272245 + MLT1A1 LTR MaLR 1 365 0 191 286 75 114 chr1 64392108 64392335 -178272018 - L2 LINE L2 -125 3147 2936 380 277 30 0 chr1 64392463 64392564 -178271789 + MER5B DNA MER1_type 75 178 0 285 355 79 31 chr1 64393575 64393865 -178270488 + L2 LINE L2 2454 2757 -557 253 209 104 0 chr1 64394261 64394328 -178270025 + MIR SINE MIR 6 79 -183 7300 92 6 2 chr1 64394565 64396361 -178267992 + L1PA7 LINE L1 4358 6154 0 347 317 33 2 chr1 64396437 64396584 -178267769 + MIR SINE MIR 28 179 -50 347 338 42 46 chr1 64397897 64398137 -178266216 + MIR SINE MIR 13 251 -11 300 186 0 0 chr1 64398143 64398202 -178266151 + GA-rich Low_complexity Low_complexity 3 61 0 184 308 0 0 chr1 64399034 64399086 -178265267 - L2 LINE L2 0 3272 3221 388 320 71 10 chr1 64399699 64399896 -178264457 - MIR SINE MIR -35 227 19 209 369 24 0 chr1 64400093 64400177 -178264176 - MIR SINE MIR -81 127 42 720 35 0 0 chr1 64401021 64401108 -178263245 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 1906 128 3 11 chr1 64401757 64402039 -178262314 - AluSx SINE Alu -20 292 13 234 361 76 8 chr1 64402122 64402241 -178262112 + L2 LINE L2 3107 3233 -39 594 135 0 31 chr1 64402241 64402337 -178262016 + MLT1A2 LTR MaLR 14 106 -268 533 296 26 0 chr1 64402733 64402885 -178261468 - MIR SINE MIR -28 234 79 2193 180 17 8 chr1 64403043 64403405 -178260948 + MLT1A1 LTR MaLR 1 365 0 374 251 85 90 chr1 64403607 64403676 -178260677 - L3 LINE CR1 -111 1466 1398 589 297 69 12 chr1 64403676 64403922 -178260431 - MIR SINE MIR -1 261 2 374 251 85 90 chr1 64403922 64404063 -178260290 - L3 LINE CR1 -179 1398 1257 397 291 48 62 chr1 64404202 64404412 -178259941 - MIR SINE MIR -50 212 6 435 227 116 43 chr1 64405112 64405335 -178259018 + MIR SINE MIR 1 243 -19 844 250 59 10 chr1 64405884 64406088 -178258265 + MIR SINE MIR 21 234 -28 404 257 62 18 chr1 64407114 64407227 -178257126 - MIR SINE MIR -130 132 15 2105 148 7 0 chr1 64408417 64408721 -178255632 + AluSx SINE Alu 1 306 -6 977 244 24 41 chr1 64408962 64409253 -178255100 + L1ME3A LINE L1 5872 6157 -13 340 265 105 49 chr1 64409761 64409979 -178254374 - MIR SINE MIR -7 255 22 331 276 0 31 chr1 64410732 64410830 -178253523 - L2 LINE L2 0 3313 3219 538 252 43 0 chr1 64411838 64411977 -178252376 + MIR3 SINE MIR 4 148 -60 484 293 42 43 chr1 64412707 64412835 -178251518 + MIR SINE MIR 18 142 -120 2214 109 0 0 chr1 64412835 64413128 -178251225 + AluSx SINE Alu 3 295 -17 484 293 42 43 chr1 64413128 64413215 -178251138 + MIR SINE MIR 142 228 -34 3601 149 92 36 chr1 64413773 64414446 -178249907 + MER50 LTR ERV1 1 711 -23 212 361 84 0 chr1 64414703 64414786 -178249567 - L2 LINE L2 -27 3245 3156 557 261 48 24 chr1 64415031 64415196 -178249157 + MIR SINE MIR 23 191 -71 247 292 71 39 chr1 64415202 64415235 -178249118 + MIR SINE MIR 92 122 -140 1921 107 99 0 chr1 64415235 64415507 -178248846 - AluSx SINE Alu 0 312 14 247 292 71 39 chr1 64415507 64415627 -178248726 + MIR SINE MIR 122 250 -12 789 189 83 12 chr1 64416153 64416322 -178248031 + MER5A DNA MER1_type 1 181 -8 1225 156 19 14 chr1 64416399 64416610 -178247743 + MER20 DNA MER1_type 8 219 0 201 215 25 13 chr1 64416663 64416742 -178247611 + GA-rich Low_complexity Low_complexity 1 80 0 439 253 0 19 chr1 64416764 64416926 -178247427 + GA-rich Low_complexity Low_complexity 4 162 0 252 303 9 47 chr1 64417344 64417412 -178246941 + CT-rich Low_complexity Low_complexity 1 70 -625 2197 130 0 9 chr1 64417412 64417727 -178246626 - AluSx SINE Alu 0 312 1 252 303 9 47 chr1 64417727 64418066 -178246287 + CT-rich Low_complexity Low_complexity 70 695 0 2149 123 13 0 chr1 64418115 64418416 -178245937 - AluSx SINE Alu -7 305 1 1668 241 87 21 chr1 64418579 64419053 -178245300 + MLT1D LTR MaLR 1 505 0 192 40 0 0 chr1 64419537 64419562 -178244791 + (GA)n Simple_repeat Simple_repeat 2 26 0 392 357 43 19 chr1 64419651 64419861 -178244492 + MIR SINE MIR 20 234 -28 323 361 30 0 chr1 64419916 64420082 -178244271 + MIR SINE MIR 74 244 -18 328 254 41 95 chr1 64421041 64421210 -178243143 - MIR SINE MIR -72 190 31 336 274 96 15 chr1 64421444 64421579 -178242774 + MIR SINE MIR 99 244 -18 22 0 0 0 chr1 64421800 64421822 -178242531 + AT_rich Low_complexity Low_complexity 1 22 0 606 230 6 12 chr1 64421930 64422091 -178242262 - L1MB8 LINE L1 0 6178 6019 630 246 48 48 chr1 64422655 64422862 -178241491 - MIR SINE MIR -35 227 21 359 297 8 23 chr1 64422919 64423047 -178241306 + L2 LINE L2 3175 3300 -13 418 270 63 16 chr1 64423098 64423224 -178241129 + MIR SINE MIR 58 189 -73 27 49 0 0 chr1 64424074 64424115 -178240238 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr1 64424770 64424801 -178239552 + AT_rich Low_complexity Low_complexity 1 31 0 572 273 118 1 chr1 64424932 64425119 -178239234 - MIR SINE MIR -26 236 30 311 294 67 8 chr1 64425976 64426095 -178238258 - MIR SINE MIR -74 188 63 779 293 19 0 chr1 64426565 64426773 -178237580 - MIR SINE MIR -13 249 38 374 228 24 71 chr1 64426816 64426943 -178237410 - MIR SINE MIR -31 231 111 474 251 30 74 chr1 64427413 64427616 -178236737 - MER117 DNA MER1_type 0 197 4 208 259 86 25 chr1 64427647 64427728 -178236625 - MIR SINE MIR -70 192 107 180 321 0 0 chr1 64428009 64428062 -178236291 - MIR3 SINE MIR -19 189 137 519 198 74 8 chr1 64428082 64428203 -178236150 - MIR SINE MIR -71 191 63 2196 113 6 16 chr1 64428366 64428677 -178235676 - AluSx SINE Alu -4 308 1 267 296 20 31 chr1 64429005 64429103 -178235250 - MLT1J2 LTR MaLR -121 329 233 503 15 0 30 chr1 64429120 64429187 -178235166 + L1PA2 LINE L1 6089 6153 -2 1572 203 25 31 chr1 64429189 64429544 -178234809 + MLT1A1 LTR MaLR 13 365 0 333 151 139 58 chr1 64429814 64429900 -178234453 + MLT1J2 LTR MaLR 356 448 -2 761 222 43 0 chr1 64430393 64430555 -178233798 - MER63A DNA MER1_type 0 210 42 246 156 0 0 chr1 64430555 64430600 -178233753 + T-rich Low_complexity Low_complexity 1 45 0 362 345 32 32 chr1 64430667 64430922 -178233431 - MIR SINE MIR -2 260 8 288 228 8 36 chr1 64432314 64432451 -178231902 + MER5B DNA MER1_type 1 176 -2 364 269 159 46 chr1 64432452 64432735 -178231618 + MLT1L LTR MaLR 147 461 -154 929 230 48 14 chr1 64432817 64433026 -178231327 - MER58A DNA MER1_type -2 222 7 556 257 42 64 chr1 64433090 64433355 -178230998 + L2 LINE L2 2219 2477 -837 344 296 118 11 chr1 64433551 64433733 -178230620 - MIR SINE MIR -6 256 52 259 287 160 27 chr1 64434212 64434362 -178229991 + MIR SINE MIR 15 184 -78 270 348 0 14 chr1 64434809 64434947 -178229406 + CT-rich Low_complexity Low_complexity 1 136 0 844 284 0 5 chr1 64435614 64435815 -178228538 + MIR3 SINE MIR 3 202 -6 24 0 0 0 chr1 64435878 64435902 -178228451 + AT_rich Low_complexity Low_complexity 1 24 0 478 281 93 7 chr1 64436150 64436364 -178227989 - MIR SINE MIR -6 256 30 303 289 81 67 chr1 64436400 64436549 -178227804 + L3 LINE CR1 1426 1576 -1 1980 119 3 51 chr1 64437381 64437693 -178226660 + AluSx SINE Alu 1 297 -15 761 251 26 10 chr1 64437950 64438145 -178226208 - MIR SINE MIR -23 239 42 253 283 266 0 chr1 64439092 64439205 -178225148 + MIR3 SINE MIR 34 176 -32 548 286 27 17 chr1 64440016 64440185 -178224168 + MER5B DNA MER1_type 24 178 0 1447 166 57 99 chr1 64441283 64441678 -178222675 + MLT2D LTR ERVL 1 516 -38 271 290 11 11 chr1 64441695 64441767 -178222586 + CT-rich Low_complexity Low_complexity 2 76 -18 192 40 0 0 chr1 64441767 64441792 -178222561 + (CA)n Simple_repeat Simple_repeat 1 25 0 271 290 11 11 chr1 64441792 64441812 -178222541 + CT-rich Low_complexity Low_complexity 75 94 0 301 333 13 20 chr1 64441917 64442070 -178222283 + MER5B DNA MER1_type 25 176 -2 24 0 0 0 chr1 64442192 64442216 -178222137 + AT_rich Low_complexity Low_complexity 1 24 0 442 70 28 0 chr1 64442279 64442350 -178222003 + (TA)n Simple_repeat Simple_repeat 2 74 0 212 368 68 0 chr1 64442397 64442530 -178221823 + L2 LINE L2 2715 2856 -458 182 299 150 47 chr1 64442566 64442693 -178221660 + L2 LINE L2 2914 3053 -219 370 314 81 53 chr1 64442944 64443140 -178221213 + MIR SINE MIR 6 196 -66 759 142 44 0 chr1 64443912 64444025 -178220328 - FLAM_C SINE Alu -15 118 1 431 275 105 40 chr1 64444254 64444454 -178219899 + MIR SINE MIR 16 228 -34 224 313 0 0 chr1 64444654 64444727 -178219626 + MIR SINE MIR 69 142 -66 309 300 150 19 chr1 64444755 64444813 -178219540 - MIR SINE MIR -48 214 165 3394 171 53 37 chr1 64444813 64445456 -178218897 + MER82 DNA MER2_type 1 653 0 309 300 150 19 chr1 64445456 64445557 -178218796 - MIR SINE MIR -97 165 34 452 261 137 53 chr1 64446105 64446407 -178217946 + L1ME4a LINE L1 5592 5950 -171 2180 119 0 3 chr1 64446407 64446709 -178217644 + AluSx SINE Alu 3 303 -9 452 261 137 53 chr1 64446709 64446881 -178217472 + L1ME4a LINE L1 5950 6106 -15 258 306 51 10 chr1 64447135 64447233 -178217120 + L2 LINE L2 3170 3271 -1 269 287 28 117 chr1 64447498 64447780 -178216573 - L2 LINE L2 -212 3060 2804 450 0 0 0 chr1 64448471 64448521 -178215832 + (TG)n Simple_repeat Simple_repeat 2 51 0 500 238 146 24 chr1 64448542 64448706 -178215647 + MER5A DNA MER1_type 4 187 -2 281 209 104 15 chr1 64448746 64448813 -178215540 + L2 LINE L2 3169 3241 -31 385 236 75 9 chr1 64448825 64448931 -178215422 + MIR SINE MIR 117 229 -33 286 299 144 17 chr1 64449001 64449208 -178215145 - MIR SINE MIR -29 233 3 759 247 148 32 chr1 64449518 64449801 -178214552 + LTR33 LTR ERVL 1 316 -205 1333 281 81 55 chr1 64450451 64451017 -178213336 + MLT1E LTR MaLR 13 593 0 1944 137 4 0 chr1 64451422 64451699 -178212654 - AluSg1 SINE Alu -31 278 1 239 237 68 0 chr1 64451779 64451838 -178212515 + L2 LINE L2 3210 3272 0 249 284 55 14 chr1 64452567 64452663 -178211690 + MIR SINE MIR 16 116 -92 336 280 21 11 chr1 64452823 64452916 -178211437 - MIR SINE MIR -158 104 11 248 289 0 62 chr1 64453040 64453137 -178211216 + MIR SINE MIR 60 150 -112 821 314 29 60 chr1 64453142 64453559 -178210794 - MLT1I LTR MaLR -2 407 4 618 291 12 0 chr1 64453861 64454033 -178210320 - MIR3 SINE MIR -2 206 33 273 254 80 72 chr1 64454482 64454620 -178209733 - L2 LINE L2 -220 3052 2914 1099 273 131 22 chr1 64455493 64455943 -178208410 - L2 LINE L2 -2 3311 2813 345 241 58 23 chr1 64456011 64456098 -178208255 + MIR SINE MIR 103 192 -70 291 304 68 25 chr1 64456472 64456633 -178207720 + MIR SINE MIR 4 171 -91 325 167 26 0 chr1 64456642 64456720 -178207633 + (TA)n Simple_repeat Simple_repeat 1 80 0 1779 179 7 7 chr1 64457246 64457542 -178206811 - AluJo SINE Alu -12 300 5 2871 3 0 0 chr1 64457837 64458141 -178206212 - AluYa5 SINE Alu -7 304 1 274 295 51 45 chr1 64458514 64458750 -178205603 + L2 LINE L2 2819 3059 -213 437 314 8 93 chr1 64458864 64459100 -178205253 + MIR SINE MIR 20 235 -27 209 293 207 17 chr1 64459744 64459860 -178204493 - L2 LINE L2 -2 3311 3174 205 216 0 0 chr1 64460240 64460277 -178204076 - L2 LINE L2 -17 3255 3219 347 267 89 85 chr1 64460568 64460804 -178203549 - L2 LINE L2 -4 3268 3032 423 300 72 24 chr1 64461022 64461227 -178203126 + MIR SINE MIR 19 225 -37 338 268 216 24 chr1 64462586 64462799 -178201554 - L2 LINE L2 -43 3229 2976 735 266 137 75 chr1 64463540 64463570 -178200783 - MLT1L LTR MaLR -2 613 586 297 0 0 0 chr1 64463570 64463603 -178200750 + (CA)n Simple_repeat Simple_repeat 2 34 0 735 266 137 75 chr1 64463603 64463691 -178200662 - MLT1L LTR MaLR -29 586 505 2077 113 7 3 chr1 64463691 64463984 -178200369 + AluSg1 SINE Alu 3 296 -13 735 266 137 75 chr1 64463984 64464440 -178199913 - MLT1L LTR MaLR -110 505 2 2254 150 9 21 chr1 64464959 64465298 -178199055 + MER1B DNA MER1_type 1 335 -2 1140 226 118 55 chr1 64465508 64465999 -178198354 + LTR33A LTR ERVL 2 523 0 531 360 54 13 chr1 64466077 64466316 -178198037 + MIR SINE MIR 2 250 -12 441 221 184 44 chr1 64466402 64466560 -178197793 - MER5A DNA MER1_type -1 188 9 474 200 11 0 chr1 64466579 64466669 -178197684 - MER58B DNA MER1_type -4 337 247 420 297 47 0 chr1 64466730 64466858 -178197495 + L2 LINE L2 3138 3271 -1 500 260 77 33 chr1 64466914 64467095 -178197258 - MIR SINE MIR -13 249 61 861 238 21 0 chr1 64468754 64468947 -178195406 - MIR SINE MIR -30 232 36 395 304 39 130 chr1 64468968 64469376 -178194977 - L2 LINE L2 -79 3193 2823 1186 256 166 9 chr1 64469824 64470181 -178194172 - LTR33 LTR ERVL -5 516 74 2088 205 16 5 chr1 64470181 64470567 -178193786 + MLT1B LTR MaLR 1 390 0 1186 256 166 9 chr1 64470567 64470655 -178193698 - LTR33 LTR ERVL -447 74 1 382 284 74 34 chr1 64471302 64471478 -178192875 - MIR SINE MIR -33 229 47 388 267 144 22 chr1 64471522 64471702 -178192651 + L2 LINE L2 2933 3134 -179 2841 182 67 15 chr1 64471702 64472285 -178192068 - L1MB4 LINE L1 0 6180 5568 519 239 54 38 chr1 64472290 64472474 -178191879 + L2 LINE L2 3127 3313 0 2337 84 0 3 chr1 64472669 64472996 -178191357 + AluY SINE Alu 1 311 0 235 214 36 0 chr1 64473214 64473270 -178191083 + L2 LINE L2 3254 3311 -2 * 279 275 66 13 chr1 64473261 64473364 -178190989 + MIR SINE MIR 43 140 -68 571 267 203 0 chr1 64473661 64473848 -178190505 - MIR SINE MIR -22 240 16 645 199 47 43 chr1 64474952 64475147 -178189206 - MER58B DNA MER1_type 0 341 143 * 1023 219 15 33 chr1 64475131 64475405 -178188948 + MER96B DNA MER1_type? 149 417 0 184 233 0 23 chr1 64475857 64475900 -178188453 + L2 LINE L2 3268 3309 -4 412 322 13 27 chr1 64477100 64477266 -178187087 + MIR3 SINE MIR 5 166 -65 299 292 186 0 chr1 64477535 64477648 -178186705 - L2 LINE L2 0 3313 3180 1660 202 0 19 chr1 64477700 64478118 -178186235 - AluJo SINE Alu 0 412 1 243 304 49 16 chr1 64478126 64478296 -178186057 - MIR SINE MIR -62 146 19 522 147 17 17 chr1 64478456 64478572 -178185781 + CT-rich Low_complexity Low_complexity 4 119 0 387 267 92 68 chr1 64478595 64478801 -178185552 - L2 LINE L2 -1 3312 3102 2072 104 9 50 chr1 64478813 64479130 -178185223 + AluSg SINE Alu 1 304 -6 2239 125 0 0 chr1 64479240 64479551 -178184802 - AluSq SINE Alu -2 311 1 318 343 93 38 chr1 64479556 64479955 -178184398 - L2 LINE L2 -343 2971 2551 220 339 16 16 chr1 64480063 64480187 -178184166 - MIR SINE MIR -13 249 126 * 240 400 58 0 chr1 64480178 64480298 -178184055 + MER5A DNA MER1_type 63 189 0 229 301 24 0 chr1 64480961 64481044 -178183309 - MLT1K LTR MaLR 0 588 504 229 307 31 39 chr1 64481044 64481088 -178183265 - LTR67 LTR ERVL 0 557 432 235 261 15 0 chr1 64481908 64481973 -178182380 + MLT1K LTR MaLR 521 586 -2 423 339 86 13 chr1 64482077 64482299 -178182054 - MIR SINE MIR -13 249 10 235 261 15 0 chr1 64483056 64483121 -178181232 + MLT1K LTR MaLR 521 586 -2 423 339 86 13 chr1 64483225 64483447 -178180906 - MIR SINE MIR -13 249 10 381 327 42 6 chr1 64483926 64484094 -178180259 + MIR3 SINE MIR 2 175 -33 312 250 125 0 chr1 64484158 64484286 -178180067 + MER103 DNA DNA 11 154 -12 752 325 80 27 chr1 64484491 64485182 -178179171 + L2 LINE L2 2537 3311 -2 193 354 0 0 chr1 64485195 64485243 -178179110 + L2 LINE L2 3139 3186 -86 254 234 121 48 chr1 64485288 64485412 -178178941 + MIR SINE MIR 124 256 -6 331 310 0 0 chr1 64485417 64485504 -178178849 + L2 LINE L2 3184 3270 -2 630 324 70 33 chr1 64485750 64486049 -178178304 - L2 LINE L2 -16 3256 2947 1986 119 3 51 chr1 64486747 64487058 -178177295 + AluSx SINE Alu 1 296 -16 842 233 85 0 chr1 64487294 64487483 -178176870 + MER58A DNA MER1_type 1 205 -19 8180 10 0 0 chr1 64487729 64488782 -178175571 + L1HS LINE L1 5101 6153 -2 493 309 144 32 chr1 64488827 64489202 -178175151 + MLT1J LTR MaLR 95 511 0 459 308 24 12 chr1 64489361 64489530 -178174823 + MIR3 SINE MIR 30 200 -8 34 0 0 0 chr1 64490625 64490659 -178173694 + AT_rich Low_complexity Low_complexity 1 34 0 1565 162 7 40 chr1 64490704 64490982 -178173371 - AluJo SINE Alu -32 280 12 521 312 29 18 chr1 64491563 64491733 -178172620 + MIR SINE MIR 20 191 -71 327 281 244 60 chr1 64491794 64492146 -178172207 + MLT1K LTR MaLR 10 426 -162 7972 11 2 9 chr1 64492273 64493177 -178171176 + L1HS LINE L1 5254 6151 -4 21 82 0 0 chr1 64493177 64493226 -178171127 + AT_rich Low_complexity Low_complexity 1 49 0 493 309 144 32 chr1 64493226 64493601 -178170752 + MLT1J LTR MaLR 95 511 0 459 308 24 12 chr1 64493760 64493929 -178170424 + MIR3 SINE MIR 30 200 -8 203 171 0 0 chr1 64495020 64495061 -178169292 + T-rich Low_complexity Low_complexity 1 41 0 1635 163 7 38 chr1 64495104 64495393 -178168960 - AluJo SINE Alu -32 280 1 222 91 0 0 chr1 64495429 64495462 -178168891 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 234 116 0 0 chr1 64495653 64495696 -178168657 + (TA)n Simple_repeat Simple_repeat 1 43 0 311 220 9 73 chr1 64495832 64495941 -178168412 - L1MC4 LINE L1 -1339 6703 6602 203 194 0 0 chr1 64495945 64495981 -178168372 + (TA)n Simple_repeat Simple_repeat 2 37 0 435 275 77 6 chr1 64495984 64496166 -178168187 - MIR SINE MIR -64 198 4 439 149 126 11 chr1 64496177 64496264 -178168089 + MER3 DNA MER1_type 1 97 -112 232 232 82 0 chr1 64496254 64496327 -178168026 + Charlie5 DNA MER1_type 8 53 -2559 * 239 306 0 0 chr1 64496357 64496419 -178167934 + MIR SINE MIR 201 262 0 1173 216 41 67 chr1 64496450 64496504 -178167849 + MER46C DNA MER2_type 5 59 -279 354 45 0 0 chr1 64496504 64496548 -178167805 + (TG)n Simple_repeat Simple_repeat 1 44 0 1173 216 41 67 chr1 64496548 64496836 -178167517 + MER46C DNA MER2_type 59 338 0 340 276 92 20 chr1 64497436 64497588 -178166765 + MIR SINE MIR 81 243 -19 262 252 205 23 chr1 64497672 64497804 -178166549 + MIR SINE MIR 16 168 -70 314 235 235 7 chr1 64498502 64498651 -178165702 + L2 LINE L2 2678 2860 -454 340 272 41 84 chr1 64499590 64499788 -178164565 + MIR3 SINE MIR 30 212 -18 350 340 7 9 chr1 64499915 64500048 -178164305 + MIR SINE MIR 16 152 -56 312 324 56 7 chr1 64500919 64501061 -178163292 + MIR3 SINE MIR 38 186 -22 239 161 18 0 chr1 64501463 64501519 -178162834 + (TA)n Simple_repeat Simple_repeat 2 58 0 554 318 82 14 chr1 64501952 64502172 -178162181 + MIR SINE MIR 3 237 -25 22 0 0 0 chr1 64502364 64502386 -178161967 + AT_rich Low_complexity Low_complexity 1 22 0 1751 188 0 16 chr1 64502731 64503035 -178161318 - AluJb SINE Alu -13 299 1 43667 34 22 1 chr1 64503745 64509775 -178154578 - L1PA2 LINE L1 0 6155 1 317 287 0 46 chr1 64511268 64511376 -178152977 + MIR SINE MIR 44 146 -62 1486 210 5 106 chr1 64511381 64511747 -178152606 - MLT1A1 LTR MaLR -2 363 40 2474 95 87 20 chr1 64511747 64512148 -178152205 - MSTA LTR MaLR 0 428 1 1486 210 5 106 chr1 64512148 64512185 -178152168 - MLT1A1 LTR MaLR -325 40 1 480 122 12 0 chr1 64512833 64512915 -178151438 - L1PA16 LINE L1 -9 6157 6075 459 240 48 0 chr1 64513155 64513280 -178151073 + MIR3 SINE MIR 31 161 -47 188 307 91 23 chr1 64514124 64514212 -178150141 - MIR SINE MIR -157 105 12 308 326 22 61 chr1 64514461 64514642 -178149711 - MIR3 SINE MIR -4 204 31 663 141 28 23 chr1 64514723 64514900 -178149453 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 26 74 0 0 chr1 64515297 64515351 -178149002 + AT_rich Low_complexity Low_complexity 1 54 0 526 259 55 55 chr1 64515381 64515601 -178148752 - MIR SINE MIR -11 251 32 198 240 0 0 chr1 64516177 64516227 -178148126 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 2504 117 13 16 chr1 64516579 64516955 -178147398 - THE1C LTR MaLR 0 375 1 364 247 193 12 chr1 64517028 64517194 -178147159 + MIR SINE MIR 51 246 -16 415 292 42 21 chr1 64517909 64518053 -178146300 + L2 LINE L2 3126 3272 0 2518 139 17 31 chr1 64518216 64518441 -178145912 - MSTB LTR MaLR 0 408 201 2742 102 3 0 chr1 64518441 64518804 -178145549 - THE1B LTR MaLR 0 364 1 2518 139 17 31 chr1 64518804 64519003 -178145350 - MSTB LTR MaLR -207 201 1 382 288 33 33 chr1 64519004 64519157 -178145196 - L2 LINE L2 -230 3042 2890 863 172 15 93 chr1 64520216 64520420 -178143933 + MER5A DNA MER1_type 1 188 -1 566 282 124 0 chr1 64521756 64521958 -178142395 - MIR SINE MIR -2 260 34 293 309 18 9 chr1 64521974 64522084 -178142269 - MIR SINE MIR -65 143 33 471 301 7 0 chr1 64522663 64522806 -178141547 + MIR SINE MIR 112 255 -7 398 195 11 23 chr1 64522870 64522957 -178141396 - MIR3 SINE MIR -42 166 81 2591 142 14 24 chr1 64523140 64523563 -178140790 + Tigger2a DNA MER2_type 16 434 0 2040 155 51 45 chr1 64523563 64524035 -178140318 - L1MA9 LINE L1 -77 6235 5761 609 103 21 41 chr1 64524092 64524189 -178140164 - L1MA9 LINE L1 -524 5788 5694 * 1262 134 0 100 chr1 64524188 64524314 -178140039 + L1M2 LINE L1 5441 5578 -713 2464 96 0 0 chr1 64524314 64524617 -178139736 + AluSx SINE Alu 1 303 -9 2325 73 17 0 chr1 64524627 64524914 -178139439 + AluY SINE Alu 2 293 -18 1262 134 0 100 chr1 64524914 64525015 -178139338 + L1M2 LINE L1 5587 5655 -636 357 296 60 52 chr1 64525016 64525266 -178139087 - MIR SINE MIR -6 256 5 832 325 30 30 chr1 64525470 64525812 -178138541 + L2 LINE L2 2556 2898 -415 2575 102 5 27 chr1 64525812 64526184 -178138169 - THE1B LTR MaLR 0 364 1 832 325 30 30 chr1 64526184 64526428 -178137925 + L2 LINE L2 2898 3141 -172 550 287 92 7 chr1 64527318 64527538 -178136815 - MIR SINE MIR -12 250 16 6848 35 1 9 chr1 64527976 64528793 -178135560 - L1PA5 LINE L1 0 6154 5344 430 319 95 63 chr1 64528971 64529319 -178135034 - L2 LINE L2 -3 3269 2911 278 309 72 7 chr1 64529766 64529905 -178134448 + MIR SINE MIR 47 194 -68 200 292 183 15 chr1 64530092 64530229 -178134124 - MIR SINE MIR -50 212 53 188 361 65 9 chr1 64530437 64530545 -178133808 + L2 LINE L2 3159 3272 0 258 356 48 52 chr1 64531728 64531743 -178132610 - L2 LINE L2 -38 3234 3220 306 0 0 0 chr1 64531743 64531777 -178132576 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 258 356 48 52 chr1 64531777 64532031 -178132322 - L2 LINE L2 -52 3220 2966 1390 232 212 43 chr1 64532081 64532550 -178131803 - LTR50 LTR ERVL 0 795 407 852 177 135 10 chr1 64532550 64532742 -178131611 + MER20 DNA MER1_type 1 216 -3 1390 232 212 43 chr1 64532742 64532952 -178131401 - LTR50 LTR ERVL -388 407 1 237 276 76 48 chr1 64533481 64533586 -178130767 - MIR3 SINE MIR -46 162 55 251 275 120 85 chr1 64533795 64534053 -178130300 - L2 LINE L2 -107 3165 2899 217 304 69 39 chr1 64534165 64534267 -178130086 + MIR SINE MIR 56 160 -102 269 246 46 0 chr1 64535141 64535206 -178129147 - L2 LINE L2 -16 3256 3189 542 246 156 6 chr1 64536371 64536550 -178127803 + MIR SINE MIR 22 227 -35 926 229 72 30 chr1 64536573 64536878 -178127475 + L1ME3 LINE L1 5810 6127 -35 201 370 28 0 chr1 64537092 64537200 -178127153 - MIR SINE MIR -62 146 36 199 258 30 30 chr1 64537645 64537711 -178126642 - L2 LINE L2 -12 3301 3236 235 289 231 0 chr1 64538455 64538576 -178125777 - L2 LINE L2 -1 3271 3123 191 225 0 0 chr1 64538829 64538869 -178125484 - MIR SINE MIR -10 252 213 387 287 165 0 chr1 64538927 64539091 -178125262 - MIR SINE MIR -59 203 13 590 309 79 10 chr1 64539140 64539431 -178124922 - L2 LINE L2 -555 2759 2449 248 294 0 24 chr1 64539620 64539705 -178124648 + CT-rich Low_complexity Low_complexity 3 85 0 271 253 55 0 chr1 64539732 64539823 -178124530 - HAL1b LINE L1 -3 1345 1250 1072 164 75 0 chr1 64540159 64540360 -178123993 + MER20 DNA MER1_type 1 216 -3 531 234 198 6 chr1 64540398 64540565 -178123788 - LTR50 LTR ERVL -596 199 1 297 311 57 23 chr1 64540688 64540865 -178123488 + L1M4b LINE L1 17 199 -6660 189 0 0 0 chr1 64541479 64541500 -178122853 + (A)n Simple_repeat Simple_repeat 1 21 0 197 319 43 11 chr1 64542045 64542139 -178122214 - L3 LINE CR1 -25 1552 1456 531 314 106 21 chr1 64542203 64542486 -178121867 + Charlie8 DNA MER1_type 31 337 -2080 476 307 128 5 chr1 64543135 64543353 -178121000 - MIR SINE MIR -12 250 6 2083 213 51 80 chr1 64543437 64544026 -178120327 - L1MB7 LINE L1 0 6184 5617 1823 151 22 19 chr1 64544026 64544337 -178120016 - AluSx SINE Alu 0 312 1 2083 213 51 80 chr1 64544337 64544447 -178119906 - L1MB7 LINE L1 -567 5617 5505 6104 72 26 39 chr1 64544449 64545286 -178119067 + LTR12 LTR ERV1 1 826 0 8376 122 31 1 chr1 64545286 64546493 -178117860 + HERV9 LTR ERV1 1 1243 -7156 30878 88 12 6 chr1 64546495 64550569 -178113784 + HERV9 LTR ERV1 1086 5184 -3215 9881 87 5 16 chr1 64550539 64551891 -178112462 + HERV9 LTR ERV1 7062 8399 0 * 6207 67 5 63 chr1 64551891 64552768 -178111585 + LTR12 LTR ERV1 1 826 0 711 195 113 11 chr1 64552768 64552953 -178111400 - L1MB7 LINE L1 -676 5502 5299 321 174 47 58 chr1 64552999 64553085 -178111268 - MIR SINE MIR -111 151 67 520 264 102 64 chr1 64553126 64553440 -178110913 + MER102b DNA MER1_type 3 328 -13 1142 177 191 55 chr1 64553722 64553987 -178110366 - MSTD LTR MaLR -2 394 70 2360 81 7 0 chr1 64553987 64554284 -178110069 + AluY SINE Alu 1 299 -12 1142 177 191 55 chr1 64554284 64554363 -178109990 - MSTD LTR MaLR -326 70 3 393 277 29 51 chr1 64554375 64554512 -178109841 - MIR SINE MIR -108 154 21 286 293 13 0 chr1 64554574 64554649 -178109704 + L2 LINE L2 3237 3312 -1 213 333 18 27 chr1 64555223 64555334 -178109019 + MIR SINE MIR 110 219 -43 192 264 52 114 chr1 64555354 64555547 -178108806 + L2 LINE L2 1832 2012 -1302 219 220 0 0 chr1 64555583 64555633 -178108720 + (CATA)n Simple_repeat Simple_repeat 4 53 0 598 217 0 0 chr1 64555635 64555755 -178108598 + MLT1B LTR MaLR 1 120 -270 197 313 21 52 chr1 64555792 64555888 -178108465 + MIR SINE MIR 168 260 -2 425 277 60 27 chr1 64555923 64556107 -178108246 - MER58C DNA MER1_type 0 215 26 6444 241 38 53 chr1 64556117 64557143 -178107210 - L1M4 LINE L1 -2007 4637 3597 1107 223 115 19 chr1 64557143 64557457 -178106896 - MER2 DNA MER2_type 0 344 1 6444 241 38 53 chr1 64557457 64557571 -178106782 - L1M4 LINE L1 -3047 3597 3483 1971 167 3 6 chr1 64557571 64557883 -178106470 - AluJo SINE Alu -1 311 1 6444 241 38 53 chr1 64557883 64560789 -178103564 - L1M4 LINE L1 -3161 3483 528 338 270 25 65 chr1 64560918 64561118 -178103235 - L1M4b LINE L1 -5451 1408 1217 59 46 0 0 chr1 64561530 64561617 -178102736 + AT_rich Low_complexity Low_complexity 1 87 0 180 0 0 0 chr1 64562357 64562377 -178101976 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 225 0 0 0 chr1 64562842 64562867 -178101486 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 345 292 6 0 chr1 64563077 64563186 -178101167 + MIR SINE MIR 38 148 -62 359 269 84 0 chr1 64563594 64563713 -178100640 + LTR67 LTR ERVL 420 548 -9 202 345 35 26 chr1 64564352 64564465 -178099888 - MIR SINE MIR -114 148 35 1450 190 6 61 chr1 64564465 64564776 -178099577 + AluJo SINE Alu 1 294 -18 1977 145 3 0 chr1 64564854 64565167 -178099186 - AluSq SINE Alu 0 317 4 543 205 60 26 chr1 64565175 64565201 -178099152 + MER58C DNA MER1_type 50 74 -2346 2186 127 0 0 chr1 64565201 64565500 -178098853 - AluSx SINE Alu -13 299 1 543 205 60 26 chr1 64565500 64565624 -178098729 + MER58C DNA MER1_type 74 205 -10 190 366 28 0 chr1 64565789 64565860 -178098493 + L3 LINE CR1 1503 1575 -2 236 278 36 0 chr1 64566646 64566730 -178097623 - MIR SINE MIR -29 179 86 270 283 132 19 chr1 64567345 64567451 -178096902 + MER5A DNA MER1_type 72 189 0 659 206 175 6 chr1 64568490 64568650 -178095703 - MIR SINE MIR 0 262 76 248 308 48 10 chr1 64568795 64568899 -178095454 - MIR SINE MIR -81 127 20 366 252 114 8 chr1 64569031 64569154 -178095199 + L2 LINE L2 3137 3272 0 370 303 23 23 chr1 64569285 64569417 -178094936 - MIR SINE MIR -102 160 29 1028 138 94 65 chr1 64569424 64569561 -178094792 + L1MB3 LINE L1 5896 6028 -155 3100 122 7 73 chr1 64569561 64570149 -178094204 - L1PB4 LINE L1 -2 6154 5606 1028 138 94 65 chr1 64570149 64570287 -178094066 + L1MB3 LINE L1 6028 6179 -4 578 196 124 111 chr1 64570301 64570322 -178094031 - MIR SINE MIR -2 260 241 2338 160 25 25 chr1 64570322 64570754 -178093599 + MSTB1 LTR MaLR 1 432 0 578 196 124 111 chr1 64570754 64570865 -178093488 - MIR SINE MIR -21 241 121 2412 96 0 0 chr1 64570865 64571178 -178093175 + AluSq SINE Alu 1 313 0 578 196 124 111 chr1 64571178 64571269 -178093084 - MIR SINE MIR -141 121 33 259 347 171 0 chr1 64571515 64571708 -178092645 + MIR SINE MIR 37 262 0 182 313 30 0 chr1 64571988 64572055 -178092298 - L3b LINE CR1 -347 1236 1168 315 65 0 0 chr1 64572417 64572463 -178091890 + (GA)n Simple_repeat Simple_repeat 1 46 0 521 315 79 32 chr1 64573051 64573267 -178091086 - MIR SINE MIR -2 260 35 305 314 92 93 chr1 64573328 64573804 -178090549 - L2 LINE L2 -183 3089 2606 1763 171 41 22 chr1 64573804 64574172 -178090181 - THE1C LTR MaLR 0 375 1 863 277 131 6 chr1 64574191 64574512 -178089841 + MLT1J2 LTR MaLR 38 398 -52 182 409 24 0 chr1 64574516 64574643 -178089710 - L2 LINE L2 -701 2613 2484 2012 115 28 14 chr1 64574697 64574985 -178089368 - AluSc SINE Alu -16 293 2 247 242 0 76 chr1 64575729 64575795 -178088558 + MIR SINE MIR 63 124 -84 730 304 118 38 chr1 64575820 64576122 -178088231 + MLT1K LTR MaLR 20 297 -291 2051 133 13 3 chr1 64576122 64576424 -178087929 + AluSx SINE Alu 1 305 -7 730 304 118 38 chr1 64576424 64576648 -178087705 + MLT1K LTR MaLR 297 588 0 612 203 47 7 chr1 64576731 64576879 -178087474 + MIR SINE MIR 75 228 -34 25 31 0 0 chr1 64576926 64576958 -178087395 + AT_rich Low_complexity Low_complexity 1 32 0 851 280 113 12 chr1 64577049 64577385 -178086968 - MLT1J2 LTR MaLR -24 426 57 371 225 67 0 chr1 64577574 64577663 -178086690 - MIR3 SINE MIR -107 101 7 2277 75 0 0 chr1 64578302 64578584 -178085769 - AluY SINE Alu -3 308 27 618 318 74 25 chr1 64579198 64579440 -178084913 + MIR SINE MIR 3 256 -6 238 233 167 33 chr1 64579614 64579704 -178084649 - MIR SINE MIR -76 186 85 591 225 53 0 chr1 64579704 64579841 -178084512 + MLT1H1 LTR MaLR 1 187 -362 213 259 28 130 chr1 64579844 64579952 -178084401 + MIR SINE MIR 123 219 -43 218 308 15 0 chr1 64580668 64580733 -178083620 + L2 LINE L2 2994 3059 -213 937 146 73 17 chr1 64580835 64581013 -178083340 - MER5A DNA MER1_type -1 188 1 293 273 114 23 chr1 64581088 64581220 -178083133 + L2 LINE L2 3167 3310 -3 214 303 38 70 chr1 64581444 64581629 -178082724 + L3 LINE CR1 1144 1322 -255 960 284 22 22 chr1 64581728 64582045 -178082308 - LTR16C LTR ERVL -37 454 138 376 198 11 37 chr1 64582323 64582445 -178081908 - MIR SINE MIR -64 144 29 1748 103 51 23 chr1 64583307 64583638 -178080715 - MER4A LTR ERV1 0 664 252 813 118 0 26 chr1 64583663 64583815 -178080538 - MER4A LTR ERV1 -516 148 1 1356 247 97 34 chr1 64584068 64584574 -178079779 + MLT1H LTR MaLR 12 549 0 226 341 41 41 chr1 64584734 64584857 -178079496 - L2 LINE L2 -10 3262 3140 467 267 9 0 chr1 64584858 64584963 -178079390 - MER81 DNA DNA -4 110 5 277 265 29 0 chr1 64585111 64585146 -178079207 - MIR SINE MIR -159 103 70 2598 113 13 8 chr1 64585146 64585519 -178078834 - THE1C LTR MaLR 0 375 1 277 265 29 0 chr1 64585519 64585551 -178078802 - MIR SINE MIR -192 70 34 3805 107 12 2 chr1 64585596 64586158 -178078195 - L1PB1 LINE L1 -5 6146 5579 355 371 65 36 chr1 64586233 64586508 -178077845 - L2 LINE L2 -167 3105 2823 225 286 32 0 chr1 64587025 64587088 -178077265 - L2 LINE L2 -7 3306 3242 241 288 36 18 chr1 64587316 64587427 -178076926 - MIR SINE MIR 0 262 150 248 378 51 0 chr1 64587555 64587746 -178076607 - L2 LINE L2 -299 2973 2766 374 320 157 14 chr1 64587994 64588440 -178075913 - L2 LINE L2 -22 3291 2776 420 264 128 34 chr1 64588961 64589163 -178075190 - MIR SINE MIR -44 218 4 659 280 55 64 chr1 64589518 64589754 -178074599 - MIR SINE MIR -17 245 12 343 274 104 0 chr1 64590474 64590580 -178073773 + MIR3 SINE MIR 81 197 -11 2561 94 21 16 chr1 64590618 64590991 -178073362 - THE1C LTR MaLR 0 375 1 359 318 135 21 chr1 64591162 64591354 -178072999 + L2 LINE L2 2539 2752 -562 531 310 54 0 chr1 64591707 64591910 -178072443 - L2 LINE L2 -1220 2094 1881 734 338 45 45 chr1 64592407 64592895 -178071458 + L2 LINE L2 2826 3313 0 302 265 98 0 chr1 64593024 64593126 -178071227 - MER5A DNA MER1_type -1 188 77 285 151 0 0 chr1 64593259 64593312 -178071041 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 5948 55 1 0 chr1 64593335 64594069 -178070284 - L1PA7 LINE L1 -11 6143 5409 197 336 152 32 chr1 64594409 64594534 -178069819 - MIR SINE MIR -44 218 79 243 229 33 0 chr1 64594760 64594821 -178069532 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 322 283 20 0 chr1 64594890 64594989 -178069364 - MIR SINE MIR -49 213 113 293 182 0 117 chr1 64595102 64595179 -178069174 + L2 LINE L2 3246 3313 0 215 200 33 0 chr1 64595289 64595349 -178069004 + (TA)n Simple_repeat Simple_repeat 1 62 0 192 269 32 75 chr1 64595357 64595450 -178068903 - L2 LINE L2 -47 3225 3137 387 0 0 0 chr1 64596283 64596326 -178068027 + (TC)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr1 64596325 64596348 -178068005 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 286 303 48 39 chr1 64596768 64596999 -178067354 + L2 LINE L2 2827 3059 -213 260 263 144 42 chr1 64597144 64597262 -178067091 + L2 LINE L2 3138 3267 -5 241 212 294 0 chr1 64597274 64597359 -178066994 + MIR SINE MIR 118 227 -35 427 368 25 6 chr1 64597414 64597533 -178066820 + L3 LINE CR1 1398 1522 -55 377 220 119 60 chr1 64597533 64597701 -178066652 - MER5B DNA MER1_type 0 178 1 427 368 25 6 chr1 64597701 64597744 -178066609 + L3 LINE CR1 1522 1563 -14 27 0 0 0 chr1 64597836 64597863 -178066490 + AT_rich Low_complexity Low_complexity 1 27 0 336 331 49 6 chr1 64597952 64598115 -178066238 + MIR SINE MIR 73 242 -20 270 239 0 0 chr1 64598132 64598203 -178066150 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 189 0 0 0 chr1 64598295 64598316 -178066037 + (T)n Simple_repeat Simple_repeat 1 21 0 231 239 0 0 chr1 64598385 64598452 -178065901 + (CA)n Simple_repeat Simple_repeat 2 68 0 328 266 49 62 chr1 64598837 64598983 -178065370 + MIR SINE MIR 30 173 -61 407 207 11 11 chr1 64599889 64599976 -178064377 - MIR SINE MIR -113 149 63 364 291 88 20 chr1 64600099 64600247 -178064106 - MIR SINE MIR -26 236 79 227 350 97 29 chr1 64600241 64600447 -178063906 + L2 LINE L2 3015 3234 -38 * 343 281 37 52 chr1 64601392 64601527 -178062826 + MIR SINE MIR 2 134 -74 233 252 52 144 chr1 64601896 64602018 -178062335 - MIR SINE MIR -32 230 141 7562 21 7 0 chr1 64602018 64603271 -178061082 + L1PA4 LINE L1 4897 6155 0 233 252 52 144 chr1 64603271 64603398 -178060955 - MIR SINE MIR -121 141 4 251 308 68 34 chr1 64603653 64603770 -178060583 - MIR SINE MIR -88 174 54 702 278 93 19 chr1 64603930 64604146 -178060207 - MIR SINE MIR 0 262 31 595 290 48 14 chr1 64604226 64604433 -178059920 - MIR SINE MIR -10 252 39 188 307 126 24 chr1 64604612 64604739 -178059614 - L2 LINE L2 -218 3054 2915 1322 212 0 8 chr1 64606320 64606570 -178057783 - AluJo SINE Alu -64 248 1 203 371 154 0 chr1 64606698 64606978 -178057375 - L2 LINE L2 0 3272 2950 238 250 0 44 chr1 64607033 64607101 -178057252 - MIR3 SINE MIR -54 154 90 422 236 5 13 chr1 64607196 64607302 -178057051 - MIR SINE MIR -103 105 4 393 231 96 106 chr1 64608092 64608183 -178056170 - MIR SINE MIR -18 244 154 1030 245 11 26 chr1 64608183 64608448 -178055905 + MIR SINE MIR 2 262 0 393 231 96 106 chr1 64608448 64608555 -178055798 - MIR SINE MIR -108 154 48 219 350 58 17 chr1 64608656 64608776 -178055577 - MIR SINE MIR -67 141 17 518 299 37 11 chr1 64609149 64609336 -178055017 - MIR SINE MIR -70 192 1 444 19 0 0 chr1 64609778 64609831 -178054522 + (CA)n Simple_repeat Simple_repeat 2 54 0 268 264 52 81 chr1 64609934 64610108 -178054245 - L2 LINE L2 -174 3098 2930 621 247 143 15 chr1 64610115 64610374 -178053979 + L2 LINE L2 3021 3312 -1 422 222 207 50 chr1 64610538 64610736 -178053617 - MIR SINE MIR -6 256 28 304 255 71 109 chr1 64610869 64611063 -178053290 - MIR SINE MIR -70 192 5 249 255 191 0 chr1 64611539 64611633 -178052720 - L2 LINE L2 -1 3312 3201 188 305 47 117 chr1 64612296 64612424 -178051929 + MIR SINE MIR 30 148 -60 516 311 77 15 chr1 64612455 64612651 -178051702 - MIR SINE MIR -7 255 48 203 32 65 0 chr1 64613405 64613436 -178050917 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 237 286 0 0 chr1 64614215 64614271 -178050082 - MIR SINE MIR -79 129 74 259 204 0 19 chr1 64614485 64614539 -178049814 + L2 LINE L2 3217 3269 -3 213 200 169 0 chr1 64615206 64615271 -178049082 - MIR SINE MIR 0 262 187 303 317 79 90 chr1 64615413 64615792 -178048561 - L2 LINE L2 -36 3236 2862 460 229 151 34 chr1 64616311 64616490 -178047863 + LTR67 LTR ERVL 358 557 0 837 264 110 76 chr1 64617424 64617913 -178046440 + MLT1J LTR MaLR 1 506 -5 955 290 50 32 chr1 64618904 64619460 -178044893 + L1MC/D LINE L1 5258 5823 -1985 21 36 0 0 chr1 64620647 64620675 -178043678 + AT_rich Low_complexity Low_complexity 1 28 0 293 335 174 0 chr1 64621355 64621516 -178042837 + MIR SINE MIR 22 210 -52 342 224 0 0 chr1 64621739 64621806 -178042547 + MIR SINE MIR 176 242 -20 293 327 18 9 chr1 64621912 64622025 -178042328 + MIR SINE MIR 23 136 -126 360 303 41 0 chr1 64622088 64622210 -178042143 + MIR SINE MIR 136 262 0 297 316 71 26 chr1 64622623 64622778 -178041575 + MIR SINE MIR 23 184 -78 199 209 0 23 chr1 64622832 64622875 -178041478 + L2 LINE L2 3060 3101 -171 408 276 48 29 chr1 64622881 64623059 -178041294 + MIR SINE MIR 3 187 -62 299 360 103 42 chr1 64623529 64623840 -178040513 - L2 LINE L2 -10 3262 2933 324 270 0 34 chr1 64623875 64624202 -178040151 + (TG)n Simple_repeat Simple_repeat 1 315 0 248 296 111 43 chr1 64624202 64624455 -178039898 - L2 LINE L2 -423 2891 2622 22 0 0 0 chr1 64624589 64624611 -178039742 + AT_rich Low_complexity Low_complexity 1 22 0 200 297 18 45 chr1 64625045 64625156 -178039197 + CT-rich Low_complexity Low_complexity 1 108 0 212 279 0 29 chr1 64625227 64625295 -178039058 + CT-rich Low_complexity Low_complexity 4 69 0 311 287 0 11 chr1 64625671 64625758 -178038595 - MIR3 SINE MIR -7 201 116 345 186 0 0 chr1 64627743 64627813 -178036540 + (CAG)n Simple_repeat Simple_repeat 3 72 0 310 264 232 2 chr1 64628313 64628471 -178035882 + MIR SINE MIR 37 239 -23 607 302 92 43 chr1 64628546 64629193 -178035160 - L2 LINE L2 0 3313 2628 276 277 40 61 chr1 64629291 64629439 -178034914 + MIR SINE MIR 69 213 -49 297 208 245 36 chr1 64629958 64630101 -178034252 - MIR3 SINE MIR -61 147 13 273 295 132 13 chr1 64630402 64630552 -178033801 + MIR SINE MIR 34 191 -66 683 225 5 96 chr1 64630636 64630854 -178033499 + MER63A DNA MER1_type 11 208 -2 510 308 21 26 chr1 64630905 64631104 -178033249 - MIR SINE MIR -27 181 17 8167 8 0 0 chr1 64631712 64632610 -178031743 - L1PA2 LINE L1 -4 6151 5254 308 284 244 60 chr1 64632737 64633089 -178031264 - MLT1K LTR MaLR -162 426 10 521 312 29 18 chr1 64633150 64633320 -178031033 - MIR SINE MIR -71 191 20 360 343 88 6 chr1 64633915 64634096 -178030257 + L2 LINE L2 3076 3271 -1 194 255 128 0 chr1 64634339 64634386 -178029967 - L2 LINE L2 0 3272 3220 407 324 74 27 chr1 64634605 64634753 -178029600 + MER91A DNA MER1_type 2 156 -40 232 326 120 0 chr1 64634776 64634868 -178029485 + MER91A DNA MER1_type 93 195 -1 233 299 13 4 chr1 64635024 64635107 -178029246 - MIR SINE MIR -57 151 99 365 299 71 0 chr1 64635754 64635881 -178028472 + MIR3 SINE MIR 51 186 -22 341 269 62 140 chr1 64636176 64636433 -178027920 + MIR SINE MIR 20 256 -6 387 319 54 90 chr1 64636642 64636977 -178027376 + L2 LINE L2 2945 3267 -5 834 284 17 9 chr1 64637170 64637402 -178026951 - MIR SINE MIR -1 261 28 279 353 88 63 chr1 64637862 64638304 -178026049 + L2 LINE L2 2818 3270 -2 919 148 0 0 chr1 64639018 64639160 -178025193 - FLAM_C SINE Alu -1 142 1 493 312 61 34 chr1 64639261 64639639 -178024714 - L2 LINE L2 -977 2337 1950 1740 115 0 0 chr1 64639674 64639909 -178024444 + AluSc SINE Alu 67 301 -8 223 250 0 62 chr1 64639924 64640004 -178024349 + MIR SINE MIR 119 193 -69 1326 261 12 25 chr1 64640058 64640380 -178023973 + MLT1I LTR MaLR 92 409 0 192 283 0 0 chr1 64640578 64640624 -178023729 - MIR SINE MIR -1 261 216 422 313 27 20 chr1 64640733 64640880 -178023473 - L3 LINE CR1 -14 1563 1416 367 328 0 8 chr1 64640883 64641005 -178023348 + L2 LINE L2 3191 3311 -2 197 261 92 0 chr1 64641025 64641090 -178023263 + MIR SINE MIR 100 170 -92 374 340 95 25 chr1 64641328 64641569 -178022784 + MIR SINE MIR 2 259 -3 736 264 115 43 chr1 64641731 64642117 -178022236 - MLT1J1 LTR MaLR 0 446 54 382 271 84 32 chr1 64642431 64642586 -178021767 - MIR SINE MIR -52 210 48 252 0 0 0 chr1 64643342 64643370 -178020983 + (CCA)n Simple_repeat Simple_repeat 3 30 0 327 263 84 20 chr1 64643764 64643887 -178020466 + MIR SINE MIR 43 174 -62 237 275 169 21 chr1 64643923 64644065 -178020288 - MIR SINE MIR -29 233 71 374 183 24 0 chr1 64644082 64644164 -178020189 + L1M LINE L1 5297 5380 -800 2206 129 0 0 chr1 64644250 64644560 -178019793 + AluSx SINE Alu 1 310 -2 300 306 88 50 chr1 64644565 64644862 -178019491 - MLT1K LTR MaLR -56 532 225 383 306 40 8 chr1 64645349 64645473 -178018880 + MIR SINE MIR 24 151 -111 1669 216 22 3 chr1 64645925 64646290 -178018063 + L1MB2 LINE L1 4488 4859 -1287 204 67 0 0 chr1 64646310 64646340 -178018013 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 43186 33 28 2 chr1 64646340 64652321 -178012032 - L1PA2 LINE L1 -16 6139 1 4903 167 45 16 chr1 64652321 64653614 -178010739 + L1MB2 LINE L1 4843 6164 -7 21 36 0 0 chr1 64653617 64653645 -178010708 + AT_rich Low_complexity Low_complexity 1 28 0 2573 74 0 0 chr1 64654316 64654627 -178009726 - AluSx SINE Alu -1 311 1 207 291 200 9 chr1 64654863 64654973 -178009380 - L2 LINE L2 -1 3271 3141 28 29 0 0 chr1 64654973 64655008 -178009345 + AT_rich Low_complexity Low_complexity 1 35 0 231 251 23 120 chr1 64655224 64655344 -178009009 + L2 LINE L2 2906 3005 -267 2191 140 55 25 chr1 64655344 64655708 -178008645 + THE1C LTR MaLR 1 375 0 231 251 23 120 chr1 64655708 64655762 -178008591 + L2 LINE L2 3005 3063 -209 374 223 155 0 chr1 64656008 64656111 -178008242 - MLT1J1 LTR MaLR -114 332 214 427 289 172 10 chr1 64656736 64656940 -178007413 - MIR SINE MIR -19 243 7 580 308 92 18 chr1 64657631 64657858 -178006495 + MIR SINE MIR 2 245 -17 644 287 80 30 chr1 64659383 64659721 -178004632 + L2 LINE L2 2440 2794 -520 746 229 2 47 chr1 64659733 64659934 -178004419 + MIR SINE MIR 47 241 -21 267 152 0 0 chr1 64659950 64659996 -178004357 + (CCA)n Simple_repeat Simple_repeat 2 47 0 228 167 24 0 chr1 64659997 64660039 -178004314 + (CAT)n Simple_repeat Simple_repeat 1 43 0 352 343 93 44 chr1 64660040 64660407 -178003946 + L2 LINE L2 2817 3201 -71 786 274 22 4 chr1 64661594 64661820 -178002533 + MIR SINE MIR 30 259 -3 227 225 47 155 chr1 64661881 64662010 -178002343 + L2 LINE L2 3153 3267 -5 201 204 0 23 chr1 64662760 64662804 -178001549 - MIR SINE MIR -110 152 110 727 259 181 69 chr1 64663060 64663110 -178001243 - MLT1H1 LTR MaLR 0 555 512 9753 114 22 18 chr1 64663110 64665392 -177998961 + L1PA10 LINE L1 3890 6167 -1 727 259 181 69 chr1 64665392 64665796 -177998557 - MLT1H1 LTR MaLR -43 512 40 2142 146 7 0 chr1 64665796 64666104 -177998249 + AluSx SINE Alu 3 312 0 727 259 181 69 chr1 64666104 64666139 -177998214 - MLT1H1 LTR MaLR -515 40 10 203 200 40 0 chr1 64666687 64666737 -177997616 + MIR SINE MIR 211 262 0 306 307 22 56 chr1 64667301 64667480 -177996873 - MIR SINE MIR -62 200 28 254 360 37 7 chr1 64668548 64668684 -177995669 - MIR SINE MIR -31 231 92 219 327 18 26 chr1 64668754 64668867 -177995486 + MIR3 SINE MIR 90 201 -7 274 287 128 0 chr1 64669562 64669656 -177994697 + L2 LINE L2 3187 3292 -21 531 263 136 57 chr1 64669666 64669894 -177994459 - MIR SINE MIR 0 262 17 1806 227 66 2 chr1 64669894 64670303 -177994050 + MLT2B1 LTR ERVL 1 435 -85 311 345 36 0 chr1 64670889 64670999 -177993354 - L2 LINE L2 -8 3264 3151 405 318 47 0 chr1 64672524 64672631 -177991722 - L2 LINE L2 -12 3260 3149 366 134 0 0 chr1 64672920 64672987 -177991366 + (TG)n Simple_repeat Simple_repeat 1 67 0 492 315 88 17 chr1 64673088 64673326 -177991027 + L2 LINE L2 3018 3272 0 413 290 194 4 chr1 64673539 64673787 -177990566 + L2 LINE L2 3013 3307 -6 2005 130 0 11 chr1 64673863 64674319 -177990034 + AluSx SINE Alu 1 453 0 617 261 79 42 chr1 64674798 64675046 -177989307 + MIR SINE MIR 3 256 -6 217 339 77 0 chr1 64675399 64675464 -177988889 - L2 LINE L2 -56 3216 3147 * 222 280 70 40 chr1 64675457 64675557 -177988796 + L2 LINE L2 3147 3249 -23 244 316 66 22 chr1 64675697 64675833 -177988520 - L2 LINE L2 -170 3143 3002 244 336 86 8 chr1 64676989 64677117 -177987236 - MER5A DNA MER1_type -14 175 38 364 338 8 15 chr1 64677227 64677360 -177986993 - MIR SINE MIR -111 151 20 363 307 10 0 chr1 64677397 64677498 -177986855 + Charlie7 DNA MER1_type 1 102 -2510 271 258 52 31 chr1 64677582 64677679 -177986674 + Charlie7 DNA MER1_type 2514 2612 0 2180 107 0 4 chr1 64678318 64678598 -177985755 + AluSq SINE Alu 1 279 -34 1014 157 0 0 chr1 64678599 64678777 -177985576 + GA-rich Low_complexity Low_complexity 2 179 0 343 331 44 44 chr1 64678836 64678996 -177985357 + MER91A DNA MER1_type 1 160 -36 223 200 50 17 chr1 64679039 64679099 -177985254 + MER91A DNA MER1_type 129 190 0 1627 105 50 0 chr1 64679435 64679654 -177984699 - MER30 DNA MER1_type 0 230 1 787 229 129 14 chr1 64679781 64679991 -177984362 + MIR SINE MIR 29 262 0 185 304 0 0 chr1 64680058 64680104 -177984249 - MIR3 SINE MIR -52 156 111 216 217 65 0 chr1 64680564 64680610 -177983743 - L2 LINE L2 -9 3263 3215 673 276 38 42 chr1 64680620 64680859 -177983494 + MIR SINE MIR 25 262 0 839 233 167 77 chr1 64680996 64681476 -177982877 + LTR33A LTR ERVL 1 523 0 186 43 0 0 chr1 64681954 64681977 -177982376 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 256 336 224 7 chr1 64682291 64682434 -177981919 - L3 LINE CR1 -233 1344 1171 270 308 111 23 chr1 64682704 64682876 -177981477 + MER5A DNA MER1_type 1 187 -2 774 118 0 59 chr1 64683015 64683150 -177981203 - FAM SINE Alu -1 48 1 712 235 8 0 chr1 64683151 64683283 -177981070 - FAM SINE Alu -52 133 1 268 255 71 20 chr1 64683325 64683423 -177980930 - L1ME4a LINE L1 -49 6072 5970 549 311 50 56 chr1 64684678 64684999 -177979354 + LTR16C LTR ERVL 173 491 0 294 333 81 16 chr1 64685015 64685138 -177979215 - MIR3 SINE MIR -63 145 15 322 397 35 0 chr1 64685309 64685425 -177978928 - L2 LINE L2 -16 3256 3137 264 326 39 23 chr1 64685575 64685704 -177978649 - L2 LINE L2 -1 3312 3182 185 271 94 21 chr1 64687137 64687233 -177977120 + MIR SINE MIR 106 208 -54 301 285 49 49 chr1 64687552 64687675 -177976678 - MIR SINE MIR -67 141 19 21 57 0 0 chr1 64688333 64688368 -177975985 + AT_rich Low_complexity Low_complexity 1 35 0 1635 190 116 37 chr1 64688993 64689425 -177974928 + MER31B LTR ERV1 1 466 0 212 264 0 19 chr1 64689469 64689522 -177974831 - L2 LINE L2 -11 3261 3210 1081 302 24 6 chr1 64689554 64689895 -177974458 + LTR16B LTR ERVL 116 462 -2 568 255 98 7 chr1 64689896 64690049 -177974304 - MIR SINE MIR -59 203 37 204 326 146 0 chr1 64690400 64690489 -177973864 - L2 LINE L2 -15 3298 3197 809 213 11 133 chr1 64690766 64691052 -177973301 + MIR SINE MIR 8 258 -4 588 192 238 6 chr1 64691254 64691426 -177972927 - LTR33 LTR ERVL 0 521 310 480 287 42 18 chr1 64691517 64691684 -177972669 - LTR33 LTR ERVL -338 183 13 1053 216 229 17 chr1 64691692 64691872 -177972481 - MLT1A1 LTR MaLR 0 365 225 342 0 0 0 chr1 64691872 64691910 -177972443 + (TG)n Simple_repeat Simple_repeat 1 38 0 216 0 0 0 chr1 64691909 64691933 -177972420 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1053 216 229 17 chr1 64691910 64692053 -177972300 - MLT1A1 LTR MaLR -140 225 1 350 257 33 25 chr1 64692630 64692750 -177971603 - MIR SINE MIR -70 192 69 517 221 63 16 chr1 64692772 64692899 -177971454 + L2 LINE L2 3178 3310 -3 275 257 30 50 chr1 64692915 64693016 -177971337 - MIR SINE MIR -73 189 91 488 254 42 0 chr1 64693075 64693193 -177971160 + MER5C DNA MER1_type 2 124 -200 181 254 91 0 chr1 64693322 64693377 -177970976 + MER5C DNA MER1_type 248 307 -17 367 211 14 0 chr1 64693556 64693627 -177970726 - L2 LINE L2 -1 3271 3200 382 319 7 15 chr1 64694091 64694226 -177970127 + MIR SINE MIR 20 153 -109 247 213 21 0 chr1 64694383 64694430 -177969923 + MIR SINE MIR 36 83 -179 481 213 115 0 chr1 64694519 64694641 -177969712 - L2 LINE L2 -1 3271 3136 344 277 98 0 chr1 64694857 64694969 -177969384 + L2 LINE L2 3191 3313 0 207 355 0 0 chr1 64695010 64695103 -177969250 - MIR SINE MIR -1 261 169 1965 205 123 37 chr1 64695387 64695954 -177968399 + MLT1E2 LTR MaLR 3 618 -8 425 319 83 0 chr1 64695962 64696119 -177968234 + L2 LINE L2 3089 3258 -14 415 257 35 56 chr1 64696666 64696810 -177967543 - MIR3 SINE MIR -65 143 3 471 301 105 64 chr1 64698121 64698387 -177965966 - L2 LINE L2 0 3272 2996 784 223 30 20 chr1 64698460 64698662 -177965691 - MIR SINE MIR -19 243 40 1042 292 77 36 chr1 64698852 64699349 -177965004 + LTR33A LTR ERVL 7 523 0 4264 153 24 3 chr1 64699411 64700130 -177964223 + L1P LINE L1 21 754 -5392 7548 57 0 0 chr1 64700130 64701375 -177962978 + L1PA6 LINE L1 4925 6170 0 2179 66 0 22 chr1 64701777 64702048 -177962305 + AluY SINE Alu 34 298 -13 492 324 12 0 chr1 64703000 64703173 -177961180 - MER117 DNA MER1_type 0 197 23 231 329 77 12 chr1 64703453 64703624 -177960729 + MIR SINE MIR 48 232 -30 * 553 323 36 32 chr1 64703600 64703851 -177960502 + MIR SINE MIR 5 256 -6 240 271 80 80 chr1 64704688 64704891 -177959462 - MIR SINE MIR -48 214 8 255 170 0 0 chr1 64705385 64705432 -177958921 + GA-rich Low_complexity Low_complexity 3 49 0 592 233 28 78 chr1 64705555 64705735 -177958618 + MIR SINE MIR 2 172 -90 297 329 24 0 chr1 64705731 64705816 -177958537 - L2 LINE L2 -213 3059 2973 * 937 65 0 0 chr1 64705821 64705929 -177958424 + AluSg SINE Alu 39 146 -164 674 269 141 19 chr1 64705991 64706356 -177957997 + LTR16A LTR ERVL 6 446 -4 288 316 148 14 chr1 64706621 64706716 -177957637 + L2 LINE L2 2848 2929 -343 1842 130 0 0 chr1 64706716 64706970 -177957383 - AluSg SINE Alu -18 292 39 288 316 148 14 chr1 64706970 64707083 -177957270 + L2 LINE L2 2929 3084 -188 365 242 69 86 chr1 64707217 64707577 -177956776 - L1ME4a LINE L1 -3 6118 5765 15508 136 32 5 chr1 64707636 64709991 -177954362 + Tigger1 DNA MER2_type 1 2418 0 347 333 63 46 chr1 64710020 64710414 -177953939 + L2 LINE L2 1683 2083 -1231 955 154 131 9 chr1 64710499 64710713 -177953640 - Tigger1 DNA MER2_type 0 2418 2179 1651 111 5 0 chr1 64711007 64711247 -177953106 - AluSq SINE Alu 0 308 68 695 283 47 78 chr1 64712179 64712540 -177951813 + MLT1I LTR MaLR 60 409 0 665 72 0 10 chr1 64712689 64712786 -177951567 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 1161 268 68 102 chr1 64712981 64714187 -177950166 - L2 LINE L2 0 3313 2141 248 301 333 6 chr1 64714551 64714734 -177949619 - MIR SINE MIR 0 262 20 315 257 119 28 chr1 64714897 64715006 -177949347 - MIR SINE MIR -110 152 34 2247 112 3 6 chr1 64715106 64715419 -177948934 + AluSx SINE Alu 1 312 0 458 260 10 0 chr1 64715633 64715733 -177948620 + MIR SINE MIR 53 153 -109 597 224 49 0 chr1 64715955 64716098 -177948255 + L1MB1 LINE L1 6015 6164 -4 244 269 0 32 chr1 64716357 64716450 -177947903 + CT-rich Low_complexity Low_complexity 2 91 0 * 256 286 14 0 chr1 64716382 64716452 -177947901 + C-rich Low_complexity Low_complexity 3 73 0 270 374 20 0 chr1 64716697 64716796 -177947557 - L2 LINE L2 -65 3207 3107 2827 170 21 0 chr1 64716796 64717267 -177947086 + L1MB5 LINE L1 5676 6156 -18 667 242 14 72 chr1 64717377 64717600 -177946753 - L2 LINE L2 -1 3312 3103 30 0 0 0 chr1 64717948 64717978 -177946375 + AT_rich Low_complexity Low_complexity 1 30 0 409 341 17 29 chr1 64719366 64719539 -177944814 - MIR3 SINE MIR -30 178 8 542 261 112 6 chr1 64719616 64719777 -177944576 - MIR SINE MIR -72 190 13 252 349 20 72 chr1 64719963 64720115 -177944238 + L2 LINE L2 3124 3267 -5 273 296 46 28 chr1 64720118 64720226 -177944127 + MIR3 SINE MIR 88 197 -11 449 334 118 35 chr1 64720635 64721213 -177943140 + L2 LINE L2 2258 2883 -431 416 34 0 34 chr1 64721346 64721405 -177942948 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 283 322 83 16 chr1 64722002 64722123 -177942230 + L2 LINE L2 3138 3266 -6 647 250 62 24 chr1 64722165 64722373 -177941980 + MIR SINE MIR 29 244 -18 256 291 47 0 chr1 64722647 64722733 -177941620 + MIR3 SINE MIR 104 193 -15 344 214 51 43 chr1 64722832 64722949 -177941404 + MIR SINE MIR 88 205 -57 184 340 71 30 chr1 64723142 64723339 -177941014 + L2 LINE L2 2649 2853 -461 271 284 95 17 chr1 64724827 64724943 -177939410 + MIR SINE MIR 93 217 -45 448 213 37 46 chr1 64724981 64725089 -177939264 + MIR SINE MIR 16 122 -140 1903 162 7 0 chr1 64725188 64725513 -177938840 - AluSp SINE Alu 0 327 1 588 269 92 71 chr1 64725745 64726028 -177938325 + LTR33A LTR ERVL 7 295 -228 379 290 91 6 chr1 64726068 64726244 -177938109 + LTR33A LTR ERVL 259 449 -74 284 341 110 11 chr1 64726628 64726810 -177937543 + MIR3 SINE MIR 8 207 -1 318 50 0 0 chr1 64727542 64727582 -177936771 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7401 98 2 3 chr1 64727583 64729339 -177935014 - L1PA7 LINE L1 -16 6138 4380 344 333 25 8 chr1 64729612 64729732 -177934621 + MIR SINE MIR 23 144 -118 282 289 13 40 chr1 64730740 64730784 -177933569 - MER91C DNA MER1_type -30 110 67 2280 158 22 8 chr1 64730784 64731144 -177933209 + MLT1A1 LTR MaLR 1 365 0 282 289 13 40 chr1 64731144 64731175 -177933178 - MER91C DNA MER1_type -73 67 37 246 319 77 22 chr1 64731935 64732063 -177932290 - MIR SINE MIR -78 130 3 206 260 0 0 chr1 64732127 64732177 -177932176 - L2 LINE L2 -1 3312 3263 378 297 78 27 chr1 64732879 64733077 -177931276 - MIR SINE MIR -43 219 14 209 303 121 20 chr1 64733141 64733240 -177931113 - L2 LINE L2 -8 3305 3197 1007 305 132 46 chr1 64734602 64734846 -177929507 - L2 LINE L2 -219 3053 2831 1831 145 7 23 chr1 64734846 64735156 -177929197 + AluJo SINE Alu 1 305 -7 1007 305 132 46 chr1 64735156 64735727 -177928626 - L2 LINE L2 -441 2831 2186 471 219 211 0 chr1 64735750 64735878 -177928475 - MER5A DNA MER1_type -23 166 12 186 229 98 0 chr1 64735901 64735962 -177928391 - L2 LINE L2 -1171 2143 2077 225 234 0 0 chr1 64735964 64736011 -177928342 + CT-rich Low_complexity Low_complexity 2 48 0 983 193 42 77 chr1 64736659 64736918 -177927435 + MLT1A2 LTR MaLR 125 374 0 310 209 200 9 chr1 64737233 64737338 -177927015 - L2 LINE L2 -1 3312 3188 739 267 60 9 chr1 64737354 64737571 -177926782 + MIR SINE MIR 20 247 -15 295 331 39 15 chr1 64737612 64737742 -177926611 - MIR3 SINE MIR -11 197 65 220 400 0 18 chr1 64737810 64737920 -177926433 + MIR SINE MIR 38 145 -63 201 283 0 0 chr1 64737921 64737974 -177926379 + (TAA)n Simple_repeat Simple_repeat 3 55 0 655 172 17 0 chr1 64738046 64738162 -177926191 + MER3 DNA MER1_type 52 122 -87 407 196 49 20 chr1 64738170 64738272 -177926081 + MER3 DNA MER1_type 2234 2338 0 * 893 181 39 82 chr1 64738272 64738499 -177925854 - MLT1A2 LTR MaLR -157 217 1 21 0 0 0 chr1 64738686 64738707 -177925646 + AT_rich Low_complexity Low_complexity 1 21 0 281 192 0 88 chr1 64738707 64738796 -177925557 + MIR SINE MIR 66 148 -60 587 293 35 70 chr1 64738916 64739203 -177925150 - L2 LINE L2 0 3272 2996 2109 175 18 3 chr1 64739297 64739639 -177924714 + MER7A DNA MER2_type 1 345 -1 764 285 33 8 chr1 64739963 64740205 -177924148 + MIR SINE MIR 1 248 -14 268 278 37 98 chr1 64740599 64740732 -177923621 - MIR SINE MIR -80 128 19 208 290 0 43 chr1 64740751 64740820 -177923533 - L2 LINE L2 -9 3263 3198 1112 256 69 49 chr1 64741043 64741449 -177922904 - MLT1K LTR MaLR 0 588 175 350 335 48 48 chr1 64741764 64741991 -177922362 + L2 LINE L2 2853 3079 -193 590 285 21 0 chr1 64742093 64742237 -177922116 - MIR SINE MIR -108 154 8 434 296 61 8 chr1 64742354 64742486 -177921867 + L3 LINE CR1 1428 1566 -11 221 354 42 21 chr1 64742484 64742580 -177921773 - L2 LINE L2 -540 2774 2677 * 211 197 131 33 chr1 64742862 64742923 -177921430 + MIR3 SINE MIR 116 182 -26 184 306 163 0 chr1 64743735 64743833 -177920520 - MIR3 SINE MIR -17 191 78 648 325 48 4 chr1 64743835 64744066 -177920287 - L3 LINE CR1 -1 1576 1336 435 284 15 0 chr1 64744139 64744273 -177920080 + MIR SINE MIR 80 215 -47 1183 265 69 49 chr1 64744942 64745281 -177919072 - L2 LINE L2 -40 3273 2942 797 183 74 6 chr1 64745281 64745456 -177918897 - MER5A DNA MER1_type 0 189 3 1183 265 69 49 chr1 64745456 64745792 -177918561 - L2 LINE L2 -371 2942 2569 1011 150 24 6 chr1 64745822 64745989 -177918364 - MER20 DNA MER1_type -4 215 46 407 237 23 53 chr1 64746038 64746169 -177918184 - L2 LINE L2 -1 3312 3186 355 206 127 43 chr1 64746550 64746691 -177917662 - MIR SINE MIR -88 120 8 264 274 221 0 chr1 64747386 64747499 -177916854 + MIR SINE MIR 110 247 -15 184 266 141 0 chr1 64747625 64747689 -177916664 + MIR SINE MIR 71 143 -65 985 239 72 60 chr1 64747735 64747842 -177916511 - L2 LINE L2 -40 3273 3169 1616 144 64 0 chr1 64747842 64748092 -177916261 + AluJb SINE Alu 28 293 -19 985 239 72 60 chr1 64748092 64748415 -177915938 - L2 LINE L2 -144 3169 2838 278 296 226 0 chr1 64749314 64749473 -177914880 - L3 LINE CR1 -128 1449 1255 493 238 40 20 chr1 64749744 64749895 -177914458 - MIR SINE MIR -35 227 74 195 259 91 70 chr1 64749949 64750092 -177914261 + MIR SINE MIR 104 249 -13 456 305 30 0 chr1 64750632 64750763 -177913590 + L2 LINE L2 3161 3295 -18 195 222 0 0 chr1 64750808 64750853 -177913500 + C-rich Low_complexity Low_complexity 6 50 0 352 247 14 0 chr1 64750855 64750928 -177913425 - L2 LINE L2 -2 3311 3238 858 248 133 79 chr1 64751770 64752332 -177912021 - L2 LINE L2 0 3313 2705 338 308 63 0 chr1 64752375 64752518 -177911835 - MIR SINE MIR -109 153 2 24 32 0 0 chr1 64752586 64752617 -177911736 + AT_rich Low_complexity Low_complexity 1 31 0 203 0 37 0 chr1 64753452 64753479 -177910874 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 392 175 246 0 chr1 64753621 64753735 -177910618 + MIR SINE MIR 47 188 -74 468 287 16 16 chr1 64753865 64753994 -177910359 + MIR SINE MIR 13 141 -121 333 237 66 90 chr1 64754063 64754214 -177910139 + MIR SINE MIR 30 175 -63 224 254 98 49 chr1 64754340 64754462 -177909891 + MIR SINE MIR 128 255 -7 386 219 62 10 chr1 64754556 64754652 -177909701 - MIR SINE MIR -113 149 49 734 221 46 61 chr1 64754668 64754930 -177909423 + MIR SINE MIR 4 261 -1 197 266 114 13 chr1 64754955 64755034 -177909319 + MIR SINE MIR 10 96 -166 222 299 0 52 chr1 64755526 64755603 -177908750 - MIR SINE MIR -18 244 172 445 222 211 6 chr1 64755727 64755898 -177908455 - L2 LINE L2 -1 3312 3107 438 311 118 4 chr1 64755967 64756221 -177908132 - L2 LINE L2 -728 2586 2304 310 290 97 7 chr1 64756309 64756454 -177907899 - MER117 DNA MER1_type -35 162 5 22 0 0 0 chr1 64756791 64756813 -177907540 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr1 64757544 64757597 -177906756 + AT_rich Low_complexity Low_complexity 1 53 0 187 320 40 27 chr1 64757631 64757706 -177906647 + MIR SINE MIR 17 92 -170 900 213 0 0 chr1 64757732 64757896 -177906457 + FRAM SINE Alu 1 162 -14 2157 97 7 0 chr1 64757936 64758226 -177906127 - AluSc SINE Alu -17 292 1 1301 329 94 26 chr1 64758236 64759221 -177905132 - L2 LINE L2 -18 3295 2234 185 290 87 0 chr1 64760000 64760069 -177904284 - MIR3 SINE MIR -52 156 82 220 280 0 0 chr1 64760200 64760250 -177904103 + MIR3 SINE MIR 120 169 -39 763 186 86 75 chr1 64760503 64760680 -177903673 - MER33 DNA MER1_type -2289 296 113 2267 100 0 3 chr1 64760680 64760981 -177903372 - AluSg SINE Alu -10 300 1 763 186 86 75 chr1 64760981 64761082 -177903271 - MER33 DNA MER1_type -2472 113 15 282 228 89 25 chr1 64761147 64761226 -177903127 + L2 LINE L2 3230 3313 0 2449 68 0 3 chr1 64761262 64761569 -177902784 - AluY SINE Alu -5 306 1 1500 101 41 5 chr1 64761778 64761997 -177902356 + MER30 DNA MER1_type 4 230 0 26 88 0 0 chr1 64762349 64762417 -177901936 + AT_rich Low_complexity Low_complexity 1 68 0 22 94 0 0 chr1 64764215 64764279 -177900074 + AT_rich Low_complexity Low_complexity 1 64 0 3295 99 0 34 chr1 64764578 64765054 -177899299 - LTR46 LTR ERV1 0 460 1 718 209 31 0 chr1 64765585 64765714 -177898639 - FLAM_A SINE Alu 0 133 1 26 30 0 0 chr1 64765920 64765953 -177898400 + AT_rich Low_complexity Low_complexity 1 33 0 269 295 42 11 chr1 64766207 64766302 -177898051 + L3 LINE CR1 1480 1577 0 1338 142 15 0 chr1 64766432 64766637 -177897716 + AluJb SINE Alu 91 298 -14 23 33 0 0 chr1 64767214 64767244 -177897109 + AT_rich Low_complexity Low_complexity 1 30 0 2643 48 0 0 chr1 64767974 64768283 -177896070 - AluY SINE Alu -2 309 1 2357 73 0 0 chr1 64769592 64769881 -177894472 + AluY SINE Alu 21 309 -2 2133 109 3 26 chr1 64771437 64771741 -177892612 + AluSx SINE Alu 1 297 -15 293 374 6 19 chr1 64772156 64772314 -177892039 - MIR SINE MIR -50 212 58 2259 105 3 0 chr1 64772516 64772820 -177891533 - AluSx SINE Alu -7 305 1 1492 193 15 15 chr1 64772820 64773089 -177891264 + AluJo SINE Alu 14 282 -30 308 273 268 27 chr1 64773506 64773689 -177890664 - MIR SINE MIR 0 262 36 680 284 118 34 chr1 64773697 64774053 -177890300 + L2 LINE L2 2916 3301 -12 411 280 128 55 chr1 64774356 64774574 -177889779 + L2 LINE L2 3032 3265 -48 297 244 250 42 chr1 64774659 64774827 -177889526 + MIR SINE MIR 54 256 -6 2132 94 35 0 chr1 64776143 64776429 -177887924 - AluSg SINE Alu -14 296 1 2370 91 0 7 chr1 64777613 64777922 -177886431 - AluY SINE Alu -4 307 1 877 83 8 8 chr1 64778405 64778526 -177885827 + AluSg/x SINE Alu 170 290 -22 444 301 43 18 chr1 64779420 64779583 -177884770 + MIR SINE MIR 72 238 -24 706 210 99 99 chr1 64780004 64780256 -177884097 - MIR SINE MIR -10 252 1 242 309 138 11 chr1 64780307 64780401 -177883952 - L2 LINE L2 -833 2481 2376 823 260 48 19 chr1 64781297 64781505 -177882848 - MIR SINE MIR -44 218 5 621 350 189 9 chr1 64781588 64782285 -177882068 - L3 LINE CR1 -692 885 63 369 256 86 17 chr1 64782365 64782482 -177881871 - L2 LINE L2 -1 3312 3188 2024 138 0 28 chr1 64782703 64783021 -177881332 - AluJb SINE Alu -3 309 1 195 250 42 0 chr1 64783086 64783134 -177881219 - L2 LINE L2 0 3313 3264 2314 112 0 3 chr1 64785661 64785975 -177878378 - AluSq SINE Alu 0 313 1 186 43 0 0 chr1 64785975 64785998 -177878355 + (A)n Simple_repeat Simple_repeat 1 23 0 2010 127 0 39 chr1 64786495 64786803 -177877550 - AluSx SINE Alu -16 296 1 315 187 93 53 chr1 64787314 64787389 -177876964 - L2 LINE L2 -36 3277 3200 366 318 63 16 chr1 64787785 64787911 -177876442 + L2 LINE L2 3141 3272 0 251 274 89 112 chr1 64788030 64788209 -177876144 + L2 LINE L2 3096 3270 -2 1374 248 82 11 chr1 64788495 64788935 -177875418 + L1MEc LINE L1 36 506 -5890 468 269 125 29 chr1 64789406 64789614 -177874739 + MIR SINE MIR 35 262 0 540 233 187 41 chr1 64789968 64790187 -177874166 + MIR SINE MIR 2 252 -10 251 282 148 74 chr1 64790471 64790620 -177873733 + MIR SINE MIR 22 181 -81 23 0 0 0 chr1 64790632 64790655 -177873698 + AT_rich Low_complexity Low_complexity 1 23 0 568 267 8 0 chr1 64790658 64790789 -177873564 - MER94 DNA DNA 0 134 3 209 273 0 0 chr1 64790893 64790937 -177873416 - L2 LINE L2 -11 3302 3259 568 228 117 19 chr1 64793479 64793570 -177870783 - MER58C DNA MER1_type -2207 213 132 333 0 0 0 chr1 64793570 64793607 -177870746 + (TG)n Simple_repeat Simple_repeat 2 38 0 568 228 117 19 chr1 64793607 64793677 -177870676 - MER58C DNA MER1_type -2288 132 36 196 286 195 19 chr1 64793996 64794150 -177870203 + MIR3 SINE MIR 20 200 -8 499 269 51 41 chr1 64794305 64794502 -177869851 + MIR3 SINE MIR 7 205 -3 1134 163 106 4 chr1 64795554 64795800 -177868553 + ORSL DNA AcHobo 1 271 -4 265 269 85 21 chr1 64798451 64798592 -177865761 - L1MC/D LINE L1 -1950 5858 5709 268 305 104 49 chr1 64799287 64799451 -177864902 - MIR3 SINE MIR -11 197 25 544 266 103 25 chr1 64800012 64800215 -177864138 - MIR SINE MIR -38 224 6 324 286 170 0 chr1 64800217 64800329 -177864024 - MIR3 SINE MIR -18 190 60 231 274 103 103 chr1 64800583 64800698 -177863655 + L2 LINE L2 2629 2743 -571 2274 112 0 0 chr1 64800698 64801002 -177863351 - AluSg SINE Alu -6 304 1 231 274 103 103 chr1 64801002 64801120 -177863233 + L2 LINE L2 2742 2862 -452 252 0 0 0 chr1 64801130 64801158 -177863195 + (CA)n Simple_repeat Simple_repeat 2 29 0 276 272 32 101 chr1 64801429 64801587 -177862766 + L2 LINE L2 3167 3313 0 2256 164 7 33 chr1 64803105 64803562 -177860791 + L1MB7 LINE L1 5717 6161 -23 183 184 0 0 chr1 64803567 64803605 -177860748 + GA-rich Low_complexity Low_complexity 3 40 0 654 270 136 79 chr1 64803693 64803945 -177860408 - HAL1 LINE L1 -1856 651 415 357 24 0 0 chr1 64803945 64803987 -177860366 + (TC)n Simple_repeat Simple_repeat 2 43 0 * 495 0 0 0 chr1 64803986 64804041 -177860312 + (TG)n Simple_repeat Simple_repeat 2 56 0 654 270 136 79 chr1 64803987 64804041 -177860312 - HAL1 LINE L1 -2092 415 366 2110 103 7 0 chr1 64804041 64804323 -177860030 - AluSx SINE Alu -28 284 1 654 270 136 79 chr1 64804323 64804473 -177859880 - HAL1 LINE L1 -2141 366 225 1634 180 21 7 chr1 64804677 64804961 -177859392 - AluJo SINE Alu -24 288 1 2009 139 73 6 chr1 64805483 64805800 -177858553 + MER1B DNA MER1_type 1 338 -1 2007 143 0 0 chr1 64806431 64806734 -177857619 - AluJb SINE Alu 0 307 5 909 227 68 0 chr1 64806890 64807097 -177857256 + MIR SINE MIR 42 262 0 2161 118 0 0 chr1 64807143 64807462 -177856891 - AluSx SINE Alu 0 319 1 636 239 136 37 chr1 64808710 64808953 -177855400 + LTR16A LTR ERVL 178 444 -6 851 300 84 17 chr1 64808973 64809647 -177854706 - L1ME3A LINE L1 -305 5865 5145 25 0 0 0 chr1 64809650 64809675 -177854678 + AT_rich Low_complexity Low_complexity 1 25 0 486 306 54 22 chr1 64809743 64810057 -177854296 - L1ME3A LINE L1 -1195 4951 4628 385 249 173 31 chr1 64810102 64810264 -177854089 + LTR1 LTR ERV1 109 232 -553 2135 193 34 2 chr1 64810794 64811203 -177853150 + MER82 DNA MER2_type 2 423 -230 266 268 0 0 chr1 64811439 64811495 -177852858 + L2 LINE L2 3200 3255 -17 696 94 0 0 chr1 64811495 64811601 -177852752 + (TGGA)n Simple_repeat Simple_repeat 1 106 0 628 286 43 8 chr1 64812055 64812289 -177852064 - MIR SINE MIR -8 254 13 595 261 41 37 chr1 64812319 64812537 -177851816 - L2 LINE L2 0 3313 3095 2104 100 9 56 chr1 64812561 64812880 -177851473 + AluSg SINE Alu 1 304 -6 864 257 51 17 chr1 64812909 64813146 -177851207 - LTR16A LTR ERVL -5 445 201 361 262 36 95 chr1 64813851 64814019 -177850334 + MIR SINE MIR 32 189 -73 4440 93 55 0 chr1 64814272 64814926 -177849427 + L1PA13 LINE L1 5470 6159 -4 401 253 222 12 chr1 64814928 64815248 -177849105 - HAL1 LINE L1 -5 2502 2116 597 220 209 0 chr1 64815362 64815539 -177848814 - HAL1 LINE L1 -596 1911 1698 2430 104 8 11 chr1 64815556 64815912 -177848441 - THE1A LTR MaLR 0 355 1 12107 86 9 1 chr1 64815913 64817479 -177846874 - THE1A-int LTR MaLR -1 1579 1 2426 102 11 8 chr1 64817479 64817833 -177846520 - THE1A LTR MaLR 0 355 1 420 20 0 0 chr1 64817834 64817883 -177846470 + (TG)n Simple_repeat Simple_repeat 2 50 0 233 301 32 32 chr1 64818179 64818272 -177846081 - L2 LINE L2 -179 3093 3001 296 206 0 15 chr1 64818409 64818477 -177845876 + L2 LINE L2 3246 3312 -1 406 269 160 35 chr1 64818495 64818751 -177845602 + L1M4 LINE L1 4878 5165 -981 1704 178 95 24 chr1 64818773 64819143 -177845210 - MSTD LTR MaLR 0 396 1 6490 225 86 37 chr1 64819143 64820791 -177843562 - MSTD-int LTR MaLR 0 1735 8 791 231 86 5 chr1 64820801 64820987 -177843366 - MSTD LTR MaLR -2 394 194 21 0 0 0 chr1 64821936 64821957 -177842396 + AT_rich Low_complexity Low_complexity 1 21 0 784 209 16 106 chr1 64822636 64822890 -177841463 - MSTD LTR MaLR -165 231 1 365 255 0 0 chr1 64822965 64823073 -177841280 + MIR SINE MIR 45 151 -63 776 315 131 26 chr1 64823360 64824167 -177840186 + L2 LINE L2 2127 3028 -244 359 242 58 21 chr1 64824425 64824558 -177839795 + MER5A DNA MER1_type 13 159 -30 281 366 41 6 chr1 64824627 64824799 -177839554 + MIR SINE MIR 35 212 -50 2004 197 22 17 chr1 64825776 64826188 -177838165 - MLT2D LTR ERVL 0 414 1 812 298 77 49 chr1 64826277 64826747 -177837606 - L2 LINE L2 0 3313 2831 744 234 67 123 chr1 64826772 64827324 -177837029 - L2 LINE L2 -833 2481 1961 256 91 0 0 chr1 64827698 64827731 -177836622 + AluSx SINE Alu 2 34 -268 6081 107 98 111 chr1 64827734 64829317 -177835036 - pTR5 LTR ERV1 0 2438 741 2058 98 4 0 chr1 64829317 64829581 -177834772 + AluSx SINE Alu 31 295 -17 6081 107 98 111 chr1 64829581 64829594 -177834759 - pTR5 LTR ERV1 -1697 741 729 219 281 62 0 chr1 64830088 64830152 -177834201 - L2 LINE L2 -19 3253 3186 398 292 75 100 chr1 64830200 64830440 -177833913 + L2 LINE L2 3007 3240 -32 388 308 93 0 chr1 64830792 64830964 -177833389 - MIR SINE MIR -15 247 60 434 193 109 34 chr1 64831053 64831172 -177833181 - MIR SINE MIR -18 244 117 202 238 222 16 chr1 64831371 64831497 -177832856 + MIR SINE MIR 46 197 -65 1767 112 120 11 chr1 64831526 64831793 -177832560 + AluSg SINE Alu 1 296 -14 331 240 194 0 chr1 64832482 64832611 -177831742 + MER5A DNA MER1_type 3 156 -33 190 219 0 0 chr1 64833284 64833325 -177831028 + MIR SINE MIR 111 151 -57 762 246 57 19 chr1 64833762 64834191 -177830162 + MLT1J LTR MaLR 24 426 -20 785 253 136 0 chr1 64834238 64834546 -177829807 - L2 LINE L2 -656 2658 2309 464 309 76 49 chr1 64836154 64836442 -177827911 - L2 LINE L2 -1 3271 2976 210 53 0 79 chr1 64836521 64836559 -177827794 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 707 295 34 44 chr1 64836559 64836945 -177827408 - L2 LINE L2 -43 3270 2889 1957 142 6 16 chr1 64836948 64837264 -177827089 + L1MC1 LINE L1 6011 6323 -10 183 147 0 0 chr1 64837264 64837278 -177827075 + (GAAAA)n Simple_repeat Simple_repeat 2 15 -20 2228 115 6 6 chr1 64837278 64837590 -177826763 + AluSx SINE Alu 1 312 0 183 147 0 0 chr1 64837590 64837609 -177826744 + (GAAAA)n Simple_repeat Simple_repeat 14 35 0 295 239 106 39 chr1 64837615 64837795 -177826558 - L2 LINE L2 -411 2903 2712 3405 153 28 28 chr1 64838144 64838746 -177825607 - LTR26 LTR ERV1 0 603 2 539 361 34 0 chr1 64838748 64839017 -177825336 - HUERS-P1 LTR ERV1 -1 6262 5985 304 167 0 0 chr1 64839040 64839088 -177825265 + LOR1-int LTR ERV1 3933 3980 -4140 * 1005 197 35 30 chr1 64839077 64839275 -177825078 + LOR1-int LTR ERV1 5939 6137 -621 34 42 0 0 chr1 64839331 64839379 -177824974 + AT_rich Low_complexity Low_complexity 1 48 0 1321 193 4 4 chr1 64839469 64839702 -177824651 - MER49 LTR ERV1 -690 233 1 1157 150 6 0 chr1 64839705 64839878 -177824475 - LOR1-int LTR ERV1 -1023 7097 6924 3573 157 34 0 chr1 64840103 64840684 -177823669 - LTR26 LTR ERV1 -2 601 1 734 318 97 10 chr1 64840815 64841217 -177823136 + L2 LINE L2 2171 2607 -707 636 244 25 45 chr1 64841358 64841559 -177822794 - MIR SINE MIR 0 262 66 316 281 114 18 chr1 64841665 64841832 -177822521 + LTR16A LTR ERVL 160 342 -108 2309 125 27 14 chr1 64841950 64842318 -177822035 + THE1C LTR MaLR 1 373 -2 414 171 0 0 chr1 64842453 64842529 -177821824 - L1MB4 LINE L1 -8 6172 6097 1125 229 8 42 chr1 64842534 64842774 -177821579 + MER8 DNA MER2_type 8 239 0 498 202 0 0 chr1 64842774 64842868 -177821485 - L1MB4 LINE L1 -80 6100 6007 186 273 212 10 chr1 64843024 64843123 -177821230 - L2 LINE L2 -211 3061 2943 446 287 8 22 chr1 64843213 64843408 -177820945 + MLT1J LTR MaLR 56 283 -228 210 37 0 0 chr1 64843505 64843532 -177820821 + (TC)n Simple_repeat Simple_repeat 2 28 0 216 262 0 0 chr1 64843532 64843574 -177820779 + (TG)n Simple_repeat Simple_repeat 2 43 0 1552 184 6 49 chr1 64844058 64844384 -177819969 + AluJo SINE Alu 1 312 0 555 208 12 29 chr1 64844631 64844799 -177819554 + L1MC5 LINE L1 7094 7256 -733 16437 156 35 21 chr1 64844888 64846143 -177818210 + L1PB2 LINE L1 1 1237 -5630 2845 166 19 77 chr1 64846143 64846792 -177817561 + LTR9 LTR ERV1 2 612 0 16437 156 35 21 chr1 64846792 64849094 -177815259 + L1PB2 LINE L1 1237 3505 -3362 1922 75 8 4 chr1 64849094 64849372 -177814981 + AluY SINE Alu 42 320 0 16437 156 35 21 chr1 64849372 64852573 -177811780 + L1PB2 LINE L1 3505 6865 -2 27 0 0 0 chr1 64852573 64852600 -177811753 + AT_rich Low_complexity Low_complexity 1 27 0 663 227 0 70 chr1 64852696 64852881 -177811472 + L1MC5 LINE L1 7274 7445 -516 605 271 23 41 chr1 64852887 64853105 -177811248 - LTR33 LTR ERVL 0 521 308 2199 112 3 38 chr1 64853257 64853571 -177810782 + AluSq SINE Alu 1 303 -10 450 304 39 84 chr1 64854597 64854929 -177809424 + L2 LINE L2 2956 3272 0 1840 139 32 14 chr1 64855995 64856276 -177808077 + AluSx SINE Alu 3 288 -24 2320 103 0 16 chr1 64856456 64856767 -177807586 - AluSc SINE Alu -3 306 1 694 269 36 16 chr1 64856854 64857103 -177807250 + MIR SINE MIR 5 258 -4 549 280 65 26 chr1 64857368 64857600 -177806753 - MLT1L LTR MaLR -9 606 366 1175 211 84 16 chr1 64857916 64858238 -177806115 - MLT1H1 LTR MaLR 0 555 212 2966 0 0 0 chr1 64858296 64858606 -177805747 + AluYa5 SINE Alu 1 310 -1 282 345 46 29 chr1 64858846 64859084 -177805269 + L2 LINE L2 2579 2820 -494 406 246 51 8 chr1 64859110 64859228 -177805125 + L2 LINE L2 3189 3311 -2 192 254 0 0 chr1 64859239 64859298 -177805055 + GA-rich Low_complexity Low_complexity 3 61 0 329 309 130 0 chr1 64859350 64859473 -177804880 + L2 LINE L2 3134 3272 0 549 303 6 11 chr1 64859937 64860115 -177804238 + MIR SINE MIR 15 191 -71 431 240 142 12 chr1 64860325 64860536 -177803817 + MIR SINE MIR 16 251 -11 397 248 35 38 chr1 64860793 64860945 -177803408 + MIR SINE MIR 8 151 -62 1074 239 149 36 chr1 64860960 64861462 -177802891 - MLT1F1 LTR MaLR -8 559 1 952 217 47 12 chr1 64862039 64862292 -177802061 + L2 LINE L2 2879 3140 -173 389 250 23 0 chr1 64862315 64862403 -177801950 - MER63A DNA MER1_type -28 182 93 222 196 0 22 chr1 64862469 64862515 -177801838 - MIR SINE MIR -92 116 72 258 258 48 0 chr1 64862536 64862598 -177801755 + MIR SINE MIR 18 82 -180 309 277 0 24 chr1 64862602 64862685 -177801668 - MER63A DNA MER1_type 0 82 2 419 248 85 35 chr1 64862688 64862829 -177801524 + L2 LINE L2 3165 3312 -1 219 294 15 0 chr1 64862914 64862982 -177801371 + L2 LINE L2 3204 3272 0 536 245 49 25 chr1 64863111 64863274 -177801079 + MIR3 SINE MIR 21 187 -21 282 222 0 0 chr1 64863769 64863823 -177800530 - MIR SINE MIR 0 262 209 241 177 167 146 chr1 64863824 64863891 -177800462 + MER58 DNA MER1_type 2 76 -139 1546 179 25 4 chr1 64863891 64864171 -177800182 - AluJb SINE Alu -26 286 1 241 177 167 146 chr1 64864171 64864199 -177800154 + MER58 DNA MER1_type 76 102 -113 * 277 170 45 134 chr1 64864197 64864225 -177800128 + MER58 DNA MER1_type 2319 2348 -72 1858 162 14 0 chr1 64864225 64864522 -177799831 - AluJb SINE Alu -11 301 1 277 170 45 134 chr1 64864522 64864605 -177799748 + MER58 DNA MER1_type 2348 2420 0 802 216 32 11 chr1 64864624 64864809 -177799544 - MIR SINE MIR -56 206 18 228 156 22 22 chr1 64864830 64864875 -177799478 + MIR SINE MIR 72 116 -92 182 322 51 0 chr1 64865420 64865479 -177798874 - L2 LINE L2 -2 3270 3209 * 267 313 52 0 chr1 64865472 64865568 -177798785 + L2 LINE L2 3151 3251 -21 201 39 0 0 chr1 64865571 64865597 -177798756 + (CCTG)n Simple_repeat Simple_repeat 1 26 0 904 176 20 0 chr1 64866644 64866792 -177797561 + FRAM SINE Alu 1 151 -15 321 285 162 6 chr1 64866811 64866990 -177797363 + MIR SINE MIR 56 262 0 539 273 113 46 chr1 64867296 64867622 -177796731 + L3 LINE CR1 1214 1561 -16 228 291 35 12 chr1 64868453 64868539 -177795814 + MIR SINE MIR 111 198 -64 8049 13 0 0 chr1 64869173 64870244 -177794109 + L1PA3 LINE L1 5132 6202 0 380 289 19 57 chr1 64870399 64870558 -177793795 + MIR SINE MIR 32 184 -78 472 269 27 34 chr1 64871121 64871270 -177793083 - MIR SINE MIR -111 151 4 32 0 0 0 chr1 64871670 64871702 -177792651 + AT_rich Low_complexity Low_complexity 1 32 0 2194 105 0 3 chr1 64871704 64872013 -177792340 + AluSq SINE Alu 1 308 0 212 305 49 0 chr1 64872610 64872692 -177791661 - MIR SINE MIR -73 189 104 276 149 0 0 chr1 64872907 64872954 -177791399 + (ATG)n Simple_repeat Simple_repeat 3 49 0 520 197 79 90 chr1 64872965 64873143 -177791210 - MIR SINE MIR -6 256 81 2200 50 0 8 chr1 64873417 64873675 -177790678 + AluY SINE Alu 56 311 0 2449 81 0 13 chr1 64873683 64873992 -177790361 + AluSp SINE Alu 2 306 -7 192 97 0 0 chr1 64875441 64875472 -177788881 + (CTG)n Simple_repeat Simple_repeat 1 31 0 208 292 0 0 chr1 64876226 64876291 -177788062 + (TCG)n Simple_repeat Simple_repeat 2 66 0 2107 129 0 0 chr1 64877686 64877972 -177786381 - AluSx SINE Alu -24 288 3 193 264 198 9 chr1 64878645 64878751 -177785602 - MIR3 SINE MIR -29 179 54 232 282 134 28 chr1 64879037 64879179 -177785174 + MIR SINE MIR 89 245 -17 210 37 0 0 chr1 64879582 64879609 -177784744 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 550 228 56 28 chr1 64879860 64880040 -177784313 - MIR3 SINE MIR 0 208 24 223 283 66 27 chr1 64880934 64881047 -177783306 + MIR SINE MIR 39 154 -63 638 192 8 23 chr1 64881700 64881830 -177782523 + LTR67 LTR ERVL 428 555 -2 314 332 75 13 chr1 64881960 64882245 -177782108 - L2 LINE L2 -199 3073 2771 932 296 82 62 chr1 64882454 64882615 -177781738 - L2 LINE L2 -574 2740 2584 2356 92 3 3 chr1 64882615 64882910 -177781443 + AluSp SINE Alu 2 296 -17 932 296 82 62 chr1 64882910 64883406 -177780947 - L2 LINE L2 -730 2584 2070 823 194 41 35 chr1 64883637 64883863 -177780490 + MIR SINE MIR 43 262 0 456 256 0 33 chr1 64883897 64884018 -177780335 + L2 LINE L2 3197 3313 0 1803 144 24 3 chr1 64884356 64884647 -177779706 - AluJb SINE Alu -15 297 1 216 204 20 41 chr1 64884710 64884759 -177779594 - MER91A DNA MER1_type -22 174 127 227 259 304 0 chr1 64884834 64884946 -177779407 - MER91A DNA MER1_type -22 174 29 670 272 59 21 chr1 64885140 64885379 -177778974 + L1ME LINE L1 5530 5777 -344 994 202 125 7 chr1 64885386 64885639 -177778714 - MER46C DNA MER2_type -26 312 28 1192 245 69 13 chr1 64885639 64885957 -177778396 + LTR48B LTR ERV1 1 336 -308 277 143 86 14 chr1 64885989 64886059 -177778294 + LTR29 LTR ERV1 390 464 -158 * 697 174 30 0 chr1 64886031 64886163 -177778190 + MER39B LTR ERV1 518 653 0 1692 177 0 0 chr1 64886636 64886918 -177777435 + 7SLRNA srpRNA srpRNA 4 285 -35 236 234 0 91 chr1 64886919 64886996 -177777357 + FAM SINE Alu 109 178 -1 1344 194 162 20 chr1 64887079 64887480 -177776873 - MLT1C LTR MaLR 0 467 10 3875 128 60 3 chr1 64887489 64888068 -177776285 - LTR9 LTR ERV1 0 612 1 186 43 0 0 chr1 64888143 64888166 -177776187 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr1 64888306 64888327 -177776026 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 7762 81 16 2 chr1 64888327 64890145 -177774208 - L1PA7 LINE L1 -16 6138 4305 246 308 43 34 chr1 64890744 64890861 -177773492 - L2 LINE L2 -219 3053 2936 511 300 18 18 chr1 64890869 64891039 -177773314 - MLT1K LTR MaLR 0 588 419 2988 178 12 4 chr1 64891066 64891578 -177772775 - MLT2B1 LTR ERVL 0 520 5 6694 192 24 44 chr1 64891600 64892073 -177772280 - L1MC1 LINE L1 -15 6318 5837 768 168 0 38 chr1 64892073 64892231 -177772122 - FLAM_A SINE Alu 0 133 1 6694 192 24 44 chr1 64892231 64892993 -177771360 - L1MC1 LINE L1 -496 5837 5061 2322 94 0 0 chr1 64892993 64893291 -177771062 + AluY SINE Alu 1 298 -13 6694 192 24 44 chr1 64893291 64894994 -177769359 - L1MC1 LINE L1 -1272 5061 3440 711 188 8 0 chr1 64895240 64895373 -177768980 + AluSg/x SINE Alu 174 307 -5 598 178 155 35 chr1 64895375 64895549 -177768804 + MLT1C LTR MaLR 69 263 -204 1640 242 28 37 chr1 64895788 64896246 -177768107 + LTR16C LTR ERVL 1 454 -37 784 167 191 0 chr1 64896663 64896825 -177767528 + L1MC1 LINE L1 6128 6320 -13 274 307 50 21 chr1 64897033 64897274 -177767079 + L1MC4a LINE L1 5685 5932 -1876 2410 64 0 7 chr1 64897348 64897643 -177766710 - AluY SINE Alu -18 293 1 200 229 21 0 chr1 64897647 64897695 -177766658 + MIR3 SINE MIR 157 205 -3 370 227 34 57 chr1 64897744 64897920 -177766433 + L1M4 LINE L1 4456 4627 -1519 353 277 70 27 chr1 64898401 64898749 -177765604 + L1M1 LINE L1 5093 5454 -757 334 192 39 0 chr1 64898801 64898879 -177765474 + L1ME4a LINE L1 5987 6067 -54 250 233 82 0 chr1 64899079 64899152 -177765201 - L2 LINE L2 -625 2689 2611 337 241 48 0 chr1 64899745 64899828 -177764525 - LTR16A1 LTR ERVL 0 457 371 2007 135 7 3 chr1 64899833 64900001 -177764352 - AluSx SINE Alu -15 297 126 456 19 0 0 chr1 64900001 64900054 -177764299 + (TG)n Simple_repeat Simple_repeat 2 54 0 2007 135 7 3 chr1 64900054 64900181 -177764172 - AluSx SINE Alu -186 126 1 1319 141 10 5 chr1 64900188 64900259 -177764094 - AluSx SINE Alu -112 200 131 405 39 0 0 chr1 64900259 64900310 -177764043 + (TG)n Simple_repeat Simple_repeat 2 52 0 1319 141 10 5 chr1 64900310 64900437 -177763916 - AluSx SINE Alu -181 131 1 1371 209 53 34 chr1 64901051 64901409 -177762944 - MLT1A1 LTR MaLR 0 365 1 1226 273 29 3 chr1 64901499 64901810 -177762543 + LTR16B LTR ERVL 5 323 -141 210 277 0 15 chr1 64901935 64902000 -177762353 - MER5A DNA MER1_type -83 106 43 186 43 0 0 chr1 64902643 64902666 -177761687 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 477 207 7 13 chr1 64903058 64903208 -177761145 + CT-rich Low_complexity Low_complexity 2 150 0 342 0 0 0 chr1 64903211 64903249 -177761104 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 350 22 33 chr1 64903468 64903651 -177760702 - MIR3 SINE MIR -60 148 3 320 348 0 22 chr1 64904112 64904247 -177760106 + MIR SINE MIR 20 151 -111 367 330 58 65 chr1 64904282 64904543 -177759810 - L2 LINE L2 -5 3267 3009 23 33 0 0 chr1 64905042 64905072 -177759281 + AT_rich Low_complexity Low_complexity 1 30 0 246 182 164 0 chr1 64905724 64905779 -177758574 + L2 LINE L2 3169 3232 -40 207 328 188 0 chr1 64905914 64906042 -177758311 + MIR SINE MIR 13 164 -98 1726 111 21 0 chr1 64906135 64906369 -177757984 - AluSg/x SINE Alu -6 306 68 350 309 22 0 chr1 64906980 64907116 -177757237 - MIR3 SINE MIR -6 202 64 1448 173 68 54 chr1 64907120 64907489 -177756864 - MLT1A2 LTR MaLR 0 374 1 219 354 15 31 chr1 64907497 64907627 -177756726 - MIR3 SINE MIR -14 194 67 343 227 13 0 chr1 64908372 64908447 -177755906 + LTR50 LTR ERVL 3 78 -717 * 825 221 249 14 chr1 64908436 64908802 -177755551 - LTR50 LTR ERVL -343 452 1 525 385 43 3 chr1 64909580 64909928 -177754425 + LTR16A LTR ERVL 8 369 -81 931 177 61 0 chr1 64909981 64910145 -177754208 - MER96 DNA MER1_type -1 174 1 525 275 36 0 chr1 64910157 64910295 -177754058 + HERV16 LTR ERVL 1 143 -4853 * 1258 353 48 16 chr1 64910293 64911083 -177753270 + HERVL LTR ERVL 4234 5048 -716 429 223 14 34 chr1 64911186 64911334 -177753019 + MER104 DNA Tc2 7 151 -29 1374 310 85 41 chr1 64911646 64912378 -177751975 + HERVL LTR ERVL 4061 4824 -830 583 331 20 44 chr1 64912369 64912777 -177751576 + HERVL LTR ERVL 4969 5366 -398 * 451 289 122 0 chr1 64912946 64913102 -177751251 + LTR16C LTR ERVL 1 175 -316 1206 132 79 0 chr1 64913107 64913297 -177751056 + AluJb SINE Alu 87 291 -21 1100 284 10 7 chr1 64913297 64913596 -177750757 + LTR16C LTR ERVL 189 488 -3 663 202 17 39 chr1 64913623 64913801 -177750552 + MER104 DNA Tc2 7 180 0 267 292 83 10 chr1 64913909 64914005 -177750348 - MIR SINE MIR -71 191 89 490 323 72 29 chr1 64914148 64914569 -177749784 + L1ME4a LINE L1 5457 5894 -276 363 44 0 0 chr1 64914642 64914687 -177749666 + (TG)n Simple_repeat Simple_repeat 1 45 0 1985 146 35 22 chr1 64914872 64915242 -177749111 + THE1C LTR MaLR 1 375 0 9791 139 5 33 chr1 64915245 64916868 -177747485 + THE1C-int LTR MaLR 4 1580 0 1584 162 70 59 chr1 64916868 64917239 -177747114 + THE1C LTR MaLR 1 375 0 258 301 52 15 chr1 64917240 64917376 -177746977 + L1ME4a LINE L1 5950 6090 -31 43563 35 22 3 chr1 64917437 64923477 -177740876 - L1PA2 LINE L1 0 6155 1 396 269 79 46 chr1 64923865 64924081 -177740272 - L2 LINE L2 -1 3312 3090 712 265 46 24 chr1 64924085 64924386 -177739967 + MLT1J LTR MaLR 1 277 -169 1873 141 69 33 chr1 64924402 64924764 -177739589 + THE1C LTR MaLR 1 375 0 1121 328 120 20 chr1 64924894 64925108 -177739245 - L2 LINE L2 -268 3045 2854 3435 103 4 6 chr1 64925108 64925595 -177738758 + L1PA11 LINE L1 5689 6174 0 1121 328 120 20 chr1 64925595 64926177 -177738176 - L2 LINE L2 -459 2854 2170 239 232 54 0 chr1 64926287 64926343 -177738010 + LTR16C LTR ERVL 431 489 -2 829 273 56 13 chr1 64926400 64926631 -177737722 - ERVL LTR ERVL -3392 2372 2132 312 269 0 0 chr1 64926768 64926835 -177737518 + MER91 DNA MER1_type 41 107 -89 277 246 127 25 chr1 64927100 64927218 -177737135 + MIR SINE MIR 17 146 -62 351 244 30 67 chr1 64927450 64927585 -177736768 - MIR SINE MIR -111 151 22 316 239 42 42 chr1 64927774 64927916 -177736437 + MIR SINE MIR 121 262 0 2189 170 5 25 chr1 64928040 64928446 -177735907 - L1MB1 LINE L1 -568 5766 5369 1581 172 77 6 chr1 64928447 64928773 -177735580 + L1MB1 LINE L1 5785 6133 -56 2029 170 46 35 chr1 64928778 64929323 -177735030 - MLT2A2 LTR ERVL -3 551 2 998 119 5 105 chr1 64929323 64929542 -177734811 + L1MA10 LINE L1 6127 6323 -11 180 111 0 0 chr1 64930341 64930368 -177733985 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 366 289 39 0 chr1 64930726 64930830 -177733523 - MIR SINE MIR -71 191 84 349 306 10 0 chr1 64930845 64930943 -177733410 + MIR SINE MIR 48 146 -116 2256 112 3 3 chr1 64931048 64931360 -177732993 + AluSp SINE Alu 1 312 -1 2647 180 106 53 chr1 64931482 64931983 -177732370 - LTR48 LTR ERV1 0 787 188 2429 89 0 10 chr1 64931983 64932297 -177732056 - AluY SINE Alu 0 311 1 2647 180 106 53 chr1 64932297 64932496 -177731857 - LTR48 LTR ERV1 -599 188 1 677 296 52 75 chr1 64932499 64932982 -177731371 + MLT1J LTR MaLR 38 509 -2 1453 214 0 0 chr1 64933437 64933717 -177730636 + AluJo SINE Alu 12 291 -21 271 297 85 53 chr1 64933775 64933954 -177730399 + MIR SINE MIR 20 205 -57 580 244 41 29 chr1 64934948 64935120 -177729233 - MIR SINE MIR -17 245 72 422 226 204 0 chr1 64935316 64935453 -177728900 - LTR33A LTR ERVL -16 507 343 410 221 229 8 chr1 64935576 64935707 -177728646 - LTR33A LTR ERVL -363 160 1 254 282 0 39 chr1 64935717 64935795 -177728558 - MIR SINE MIR -92 116 42 986 306 70 48 chr1 64936082 64936692 -177727661 - MLT2E LTR ERVL -3 625 1 236 340 78 63 chr1 64936720 64937390 -177726963 + L2 LINE L2 1560 2239 -1075 604 173 0 0 chr1 64937391 64937495 -177726858 - FLAM_C SINE Alu -1 142 39 188 276 69 0 chr1 64937495 64937553 -177726800 + L2 LINE L2 2234 2295 -1019 443 266 25 13 chr1 64937649 64937807 -177726546 - MIR SINE MIR -16 246 87 3123 207 73 64 chr1 64937844 64937897 -177726456 + L1ME1 LINE L1 5206 5257 -1077 1876 166 43 20 chr1 64937897 64938289 -177726064 + L1MA7 LINE L1 5891 6291 0 3123 207 73 64 chr1 64938289 64939202 -177725151 + L1ME1 LINE L1 5257 6334 0 427 241 7 55 chr1 64939602 64939747 -177724606 + MIR3 SINE MIR 66 203 -5 209 289 0 0 chr1 64940203 64940255 -177724098 - MIR SINE MIR -108 154 103 204 135 27 0 chr1 64940376 64940413 -177723940 + G-rich Low_complexity Low_complexity 5 42 0 469 232 34 28 chr1 64940794 64940971 -177723382 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 303 316 0 53 chr1 64940917 64941053 -177723300 + GA-rich Low_complexity Low_complexity 1 143 -340 * 2609 52 0 10 chr1 64941053 64941363 -177722990 + AluY SINE Alu 3 309 -2 303 316 0 53 chr1 64941363 64941428 -177722925 + GA-rich Low_complexity Low_complexity 143 483 0 475 254 28 28 chr1 64942077 64942219 -177722134 + MIR SINE MIR 103 244 -18 655 225 46 61 chr1 64942815 64943077 -177721276 - MIR SINE MIR -1 261 4 355 219 62 10 chr1 64943093 64943189 -177721164 + MIR SINE MIR 49 149 -113 191 263 91 30 chr1 64943306 64943405 -177720948 - MIR SINE MIR -30 232 128 299 257 60 83 chr1 64943531 64943682 -177720671 - MIR SINE MIR -63 145 30 426 287 16 16 chr1 64943751 64943880 -177720473 - MIR SINE MIR -121 141 13 350 175 246 0 chr1 64944010 64944124 -177720229 - MIR SINE MIR -74 188 47 203 0 37 0 chr1 64944266 64944293 -177720060 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr1 64945128 64945159 -177719194 + AT_rich Low_complexity Low_complexity 1 31 0 294 308 63 0 chr1 64945227 64945370 -177718983 + MIR SINE MIR 2 153 -109 738 245 133 79 chr1 64945413 64945975 -177718378 + L2 LINE L2 2705 3313 0 330 247 14 0 chr1 64946817 64946890 -177717463 + L2 LINE L2 3238 3311 -2 195 222 0 0 chr1 64946892 64946937 -177717416 + G-rich Low_complexity Low_complexity 6 50 0 419 305 30 0 chr1 64946982 64947113 -177717240 - L2 LINE L2 -18 3295 3161 450 238 40 20 chr1 64947850 64948001 -177716352 + MIR SINE MIR 74 227 -35 230 296 226 0 chr1 64948272 64948431 -177715922 + L3 LINE CR1 1255 1449 -128 863 240 63 61 chr1 64949330 64949653 -177714700 + L2 LINE L2 2838 3164 -149 1630 144 64 0 chr1 64949653 64949903 -177714450 - AluJb SINE Alu -19 293 28 863 240 63 61 chr1 64949903 64950004 -177714349 + L2 LINE L2 3164 3263 -50 229 274 221 0 chr1 64950246 64950359 -177713994 - MIR SINE MIR -15 247 110 344 226 117 42 chr1 64951056 64951198 -177713155 + MIR SINE MIR 8 163 -88 369 237 23 53 chr1 64951579 64951710 -177712643 + L2 LINE L2 3186 3312 -1 1019 150 24 6 chr1 64951759 64951926 -177712427 + MER20 DNA MER1_type 46 215 -4 862 262 60 39 chr1 64951956 64952292 -177712061 + L2 LINE L2 2569 2911 -403 717 192 42 6 chr1 64952292 64952459 -177711894 + MER5A DNA MER1_type 3 175 -14 672 287 128 27 chr1 64952478 64952806 -177711547 + L2 LINE L2 2913 3273 -40 396 284 15 0 chr1 64953475 64953609 -177710744 - MIR SINE MIR -47 215 80 606 320 48 4 chr1 64953682 64953913 -177710440 + L3 LINE CR1 1336 1576 -1 196 195 54 13 chr1 64954825 64954886 -177709467 - MIR SINE MIR -26 182 116 196 360 47 0 chr1 64955178 64955264 -177709089 + L2 LINE L2 2685 2774 -540 * 393 296 61 8 chr1 64955262 64955394 -177708959 - L3 LINE CR1 -11 1566 1428 546 285 21 0 chr1 64955511 64955655 -177708698 + MIR SINE MIR 8 154 -108 314 345 35 25 chr1 64955785 64955985 -177708368 - L2 LINE L2 -218 3054 2853 1116 256 69 49 chr1 64956300 64956706 -177707647 + MLT1K LTR MaLR 175 588 0 187 290 0 43 chr1 64956929 64956998 -177707355 + L2 LINE L2 3198 3263 -9 237 278 37 98 chr1 64957017 64957150 -177707203 + MIR SINE MIR 19 151 -80 691 285 33 8 chr1 64957544 64957786 -177706567 - MIR SINE MIR -14 248 1 1987 178 18 3 chr1 64958111 64958453 -177705900 - MER7A DNA MER2_type -1 345 1 501 297 35 67 chr1 64958551 64958834 -177705519 + L2 LINE L2 2999 3272 0 274 179 0 88 chr1 64958954 64959043 -177705310 - MIR SINE MIR -60 148 66 21 0 0 0 chr1 64959043 64959064 -177705289 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 64959168 64959201 -177705152 + AT_rich Low_complexity Low_complexity 1 33 0 1600 183 40 56 chr1 64959251 64959628 -177704725 + MLT1A2 LTR MaLR 4 374 0 276 209 200 9 chr1 64959943 64960048 -177704305 - L2 LINE L2 -1 3312 3188 636 267 60 9 chr1 64960064 64960281 -177704072 + MIR SINE MIR 20 247 -15 313 331 39 15 chr1 64960322 64960452 -177703901 - MIR3 SINE MIR -11 197 65 228 400 0 18 chr1 64960520 64960630 -177703723 + MIR SINE MIR 38 145 -63 201 283 0 0 chr1 64960631 64960684 -177703669 + (TAA)n Simple_repeat Simple_repeat 3 55 0 656 172 17 0 chr1 64960756 64960872 -177703481 + MER3 DNA MER1_type 52 122 -87 396 196 49 20 chr1 64960880 64960982 -177703371 + MER3 DNA MER1_type 2234 2338 0 * 420 158 39 142 chr1 64960982 64961104 -177703249 - MLT1A2 LTR MaLR -157 217 109 1004 209 51 4 chr1 64961101 64961374 -177702979 + MER3 DNA MER1_type 2338 2623 0 551 200 58 0 chr1 64961818 64961938 -177702415 + LTR33A LTR ERVL 320 446 -77 254 355 54 0 chr1 64962070 64962163 -177702190 + MIR SINE MIR 50 147 -61 223 259 56 0 chr1 64963096 64963150 -177701203 + MIR SINE MIR 91 147 -61 371 321 102 11 chr1 64963483 64963670 -177700683 + MIR SINE MIR 34 237 -25 971 251 87 93 chr1 64963844 64964359 -177699994 + LTR33A LTR ERVL 11 522 -1 288 276 165 16 chr1 64964895 64965022 -177699331 + MIR SINE MIR 38 183 -79 497 279 171 25 chr1 64965903 64966183 -177698170 + L3 LINE CR1 1045 1365 -212 594 320 57 16 chr1 64966332 64966579 -177697774 + MIR SINE MIR 6 262 0 501 62 0 0 chr1 64966873 64966938 -177697415 - Alu SINE Alu -10 301 237 696 309 116 30 chr1 64967764 64968169 -177696184 + LTR33 LTR ERVL 33 472 -49 1196 220 23 26 chr1 64968442 64968706 -177695647 - MLT2B1 LTR ERVL -253 267 5 334 359 52 46 chr1 64968914 64969262 -177695091 - L2 LINE L2 -654 2660 2311 247 330 90 67 chr1 64969741 64970098 -177694255 - L2 LINE L2 -1034 2280 1916 380 278 94 3 chr1 64970392 64970530 -177693823 - MIR SINE MIR -65 143 17 256 195 0 0 chr1 64970674 64970715 -177693638 - L2 LINE L2 -6 3307 3267 495 236 21 24 chr1 64970725 64970886 -177693467 - MLT2B1 LTR ERVL -74 441 283 268 216 14 27 chr1 64970889 64970963 -177693390 - L2 LINE L2 -72 3241 3169 873 294 105 33 chr1 64970972 64971487 -177692866 - L2 LINE L2 0 3313 2751 1841 280 65 22 chr1 64971490 64972118 -177692235 - L2 LINE L2 -437 2877 2223 2488 194 118 52 chr1 64972120 64973001 -177691352 + L1MC5 LINE L1 6876 7793 -168 618 214 121 39 chr1 64973145 64973351 -177691002 + L1ME3 LINE L1 5927 6149 -13 562 184 87 0 chr1 64973407 64973510 -177690843 + FLAM_C SINE Alu 14 125 -18 784 289 108 0 chr1 64973546 64973823 -177690530 - L2 LINE L2 -1079 2235 1929 1614 149 29 118 chr1 64974073 64974456 -177689897 - MLT1A1 LTR MaLR 0 365 17 222 319 21 21 chr1 64974473 64974567 -177689786 + MIR SINE MIR 154 247 -15 2154 75 0 4 chr1 64975569 64975849 -177688504 + AluSc SINE Alu 22 300 -9 257 231 19 0 chr1 64975991 64976043 -177688310 + CT-rich Low_complexity Low_complexity 3 55 0 545 292 169 62 chr1 64976362 64976746 -177687607 + L2 LINE L2 2889 3313 0 2190 260 88 49 chr1 64977503 64977650 -177686703 - L2 LINE L2 -179 3134 2994 2011 166 27 45 chr1 64977650 64977838 -177686515 - MSTD LTR MaLR 0 396 206 270 0 0 0 chr1 64977838 64977868 -177686485 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 360 88 0 0 chr1 64977867 64977924 -177686429 + (TG)n Simple_repeat Simple_repeat 1 57 0 2011 166 27 45 chr1 64977868 64977941 -177686412 - MSTD LTR MaLR -190 206 133 195 42 0 0 chr1 64977941 64977965 -177686388 + (GA)n Simple_repeat Simple_repeat 1 24 0 2011 166 27 45 chr1 64977965 64978161 -177686192 - MSTD LTR MaLR -263 133 1 2190 260 88 49 chr1 64978161 64979012 -177685341 - L2 LINE L2 -319 2994 2106 315 291 152 42 chr1 64979328 64979493 -177684860 + LTR33 LTR ERVL 70 252 -269 266 309 151 32 chr1 64980337 64980463 -177683890 + MIR SINE MIR 14 154 -108 201 319 21 21 chr1 64981325 64981406 -177682947 + L2 LINE L2 2687 2767 -547 607 284 10 56 chr1 64981406 64981603 -177682750 - MER5A DNA MER1_type -1 188 1 577 308 65 19 chr1 64981718 64981981 -177682372 + L2 LINE L2 3026 3300 -13 303 200 100 22 chr1 64982416 64982506 -177681847 + MLT1K LTR MaLR 492 588 0 353 285 56 34 chr1 64982615 64982794 -177681559 - L2 LINE L2 -257 3056 2874 439 322 77 10 chr1 64983008 64983216 -177681137 + LTR16A1 LTR ERVL 236 457 0 180 0 0 0 chr1 64983353 64983373 -177680980 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 372 343 39 22 chr1 64983380 64983561 -177680792 + L2 LINE L2 2875 3058 -214 245 250 12 25 chr1 64983649 64983729 -177680624 + Charlie7 DNA MER1_type 2530 2608 -4 912 260 62 16 chr1 64983811 64984053 -177680300 - MIR SINE MIR -2 260 8 265 375 123 29 chr1 64984526 64984769 -177679584 - L2 LINE L2 -2 3270 3005 * 312 373 51 0 chr1 64984757 64984915 -177679438 + MIR SINE MIR 28 193 -69 490 258 91 0 chr1 64984928 64985060 -177679293 - MIR SINE MIR -4 258 115 1031 284 104 39 chr1 64985082 64985522 -177678831 - LTR16C LTR ERVL -19 472 4 485 141 26 12 chr1 64985522 64985615 -177678738 - MIR SINE MIR -84 124 28 382 313 97 0 chr1 64985789 64985933 -177678420 + MIR3 SINE MIR 34 191 -17 231 242 0 0 chr1 64986388 64986450 -177677903 + (TG)n Simple_repeat Simple_repeat 1 62 0 490 212 30 1 chr1 64986898 64987015 -177677338 + MIR SINE MIR 40 158 -50 814 157 0 0 chr1 64987046 64987180 -177677173 + AluJb SINE Alu 174 307 -5 193 370 0 0 chr1 64987195 64987276 -177677077 + MIR SINE MIR 172 252 -10 1294 184 8 16 chr1 64987733 64987989 -177676364 + L1MD3 LINE L1 7742 7995 0 451 241 190 17 chr1 64988164 64988338 -177676015 + MIR SINE MIR 59 262 0 912 211 83 0 chr1 64988525 64988753 -177675600 - MIR SINE MIR 0 262 16 380 252 29 10 chr1 64988763 64988866 -177675487 - LTR16A1 LTR ERVL -352 105 1 594 268 125 6 chr1 64988868 64989036 -177675317 - MLT1I LTR MaLR -212 197 10 424 165 198 0 chr1 64989310 64989401 -177674952 + MER81 DNA DNA 6 114 0 372 269 154 13 chr1 64989401 64989550 -177674803 + MIR SINE MIR 89 258 -4 405 228 26 44 chr1 64990237 64990351 -177674002 - MER81 DNA DNA 0 114 3 287 286 127 0 chr1 64990448 64990574 -177673779 + L2 LINE L2 3172 3313 0 669 306 117 38 chr1 64991733 64992024 -177672329 - L2 LINE L2 -1 3312 2999 1186 254 98 44 chr1 64992075 64992598 -177671755 - MLT1L LTR MaLR -8 607 57 188 65 0 32 chr1 64992598 64992629 -177671724 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 239 246 282 9 chr1 64992665 64992775 -177671578 - MIR SINE MIR -121 141 2 288 328 52 69 chr1 64994323 64994628 -177669725 + L1ME1 LINE L1 3 302 -6238 447 210 0 12 chr1 64994655 64994736 -177669617 + MLT1F1 LTR MaLR 46 125 -442 2288 44 0 0 chr1 64994755 64995050 -177669303 + AluY SINE Alu 13 307 0 2196 158 97 90 chr1 64995051 64995365 -177668988 + L1MD3 LINE L1 7416 7737 -258 1485 194 7 17 chr1 64995365 64995659 -177668694 - AluJb SINE Alu -17 295 5 2196 158 97 90 chr1 64995659 64995920 -177668433 + L1MD3 LINE L1 7737 7995 0 369 221 145 53 chr1 64995923 64996054 -177668299 + L1ME1 LINE L1 2672 2814 -3726 2517 213 73 63 chr1 64996054 64996178 -177668175 + L1ME1 LINE L1 5583 5704 -856 2002 107 6 49 chr1 64996178 64996504 -177667849 - AluSp SINE Alu -1 312 1 2517 213 73 63 chr1 64996504 64996800 -177667553 + L1ME1 LINE L1 5704 5995 -565 1935 101 6 61 chr1 64996800 64997128 -177667225 + AluSx SINE Alu 3 312 0 2517 213 73 63 chr1 64997128 64997596 -177666757 + L1ME1 LINE L1 5995 6484 -76 1224 288 44 16 chr1 64999340 64999792 -177664561 - LTR16C LTR ERVL 0 491 27 445 333 93 0 chr1 65000202 65000406 -177663947 + MIR SINE MIR 23 245 -17 547 254 90 0 chr1 65000495 65000629 -177663724 - MIR SINE MIR -115 147 2 555 264 40 40 chr1 65001030 65001178 -177663175 + MER5B DNA MER1_type 27 174 -4 284 283 310 7 chr1 65001187 65001332 -177663021 - MIR SINE MIR -65 197 9 416 348 5 21 chr1 65001336 65001523 -177662830 - MIR3 SINE MIR -21 187 4 437 291 14 43 chr1 65002241 65002361 -177661992 - L2 LINE L2 0 3272 3155 1043 205 35 0 chr1 65002361 65002561 -177661792 - MER3 DNA MER1_type -2 207 1 437 291 14 43 chr1 65002561 65002581 -177661772 - L2 LINE L2 -117 3155 3136 260 309 262 7 chr1 65002577 65002726 -177661627 - MIR SINE MIR -50 212 26 * 1794 137 0 38 chr1 65002792 65003112 -177661241 + AluSx SINE Alu 1 309 0 328 295 107 13 chr1 65003161 65003310 -177661043 + MIR SINE MIR 100 262 0 1921 255 7 73 chr1 65003468 65003966 -177660387 - MLT1F1 LTR MaLR -7 560 107 1872 162 3 0 chr1 65003966 65004268 -177660085 + AluSx SINE Alu 1 303 -9 1921 255 7 73 chr1 65004268 65004369 -177659984 - MLT1F1 LTR MaLR -460 107 1 467 295 128 27 chr1 65004985 65005283 -177659070 + Charlie7 DNA MER1_type 30 357 -2255 331 242 61 20 chr1 65005279 65005378 -177658975 + Charlie7 DNA MER1_type 1493 1595 -1017 * 442 212 47 90 chr1 65005407 65005619 -177658734 + Charlie7 DNA MER1_type 2410 2612 0 266 315 22 11 chr1 65006276 65006368 -177657985 - MIR SINE MIR -70 138 46 2468 14 0 0 chr1 65006380 65006660 -177657693 - AluYb8 SINE Alu -2 316 37 743 258 16 16 chr1 65007006 65007196 -177657157 + MIR SINE MIR 73 262 0 357 250 28 46 chr1 65007203 65007311 -177657042 + MIR SINE MIR 118 223 -39 490 344 23 39 chr1 65008756 65009012 -177655341 + MIR SINE MIR 5 256 -6 227 267 58 12 chr1 65009167 65009253 -177655100 - MIR3 SINE MIR -9 199 110 243 345 67 8 chr1 65009454 65009573 -177654780 - MER91A DNA MER1_type -29 167 42 415 253 253 0 chr1 65009983 65010145 -177654208 - MIR SINE MIR 0 262 60 1222 264 65 27 chr1 65010275 65010722 -177653631 + LTR16B LTR ERVL 1 464 0 236 244 165 102 chr1 65010923 65011226 -177653127 + L2 LINE L2 2951 3272 0 331 316 86 0 chr1 65011323 65011462 -177652891 + MIR SINE MIR 34 184 -78 221 250 118 97 chr1 65011721 65011865 -177652488 - L2 LINE L2 -12 3301 3155 2101 118 0 0 chr1 65012185 65012493 -177651860 - AluSc SINE Alu 0 308 1 509 248 52 43 chr1 65012553 65012763 -177651590 - L1ME2 LINE L1 -216 5948 5737 1020 280 38 3 chr1 65012803 65013117 -177651236 - LTR16B LTR ERVL -22 442 118 452 305 85 20 chr1 65013470 65013670 -177650683 + MIR SINE MIR 29 241 -21 34 24 0 0 chr1 65014139 65014180 -177650173 + AT_rich Low_complexity Low_complexity 1 41 0 205 231 0 0 chr1 65014224 65014263 -177650090 + L2 LINE L2 3225 3263 -9 244 272 25 37 chr1 65014270 65014351 -177650002 - MIR SINE MIR -65 197 118 1962 151 0 0 chr1 65014387 65014744 -177649609 - AluSx SINE Alu 0 357 1 194 317 85 0 chr1 65015025 65015107 -177649246 - L3 LINE CR1 -77 1500 1412 330 326 0 0 chr1 65015217 65015309 -177649044 + MIR SINE MIR 63 154 -108 463 250 17 0 chr1 65015312 65015432 -177648921 - MLT1L LTR MaLR -2 613 492 260 236 264 7 chr1 65015660 65015808 -177648545 - MLT1L LTR MaLR -403 212 27 2413 101 65 31 chr1 65015812 65016226 -177648127 + MSTA LTR MaLR 1 428 0 244 333 43 0 chr1 65016237 65016330 -177648023 + MIR SINE MIR 166 262 0 430 241 86 70 chr1 65017459 65017531 -177646822 + MIR SINE MIR 73 142 -120 2517 25 0 0 chr1 65017531 65017862 -177646491 + AluY SINE Alu 1 331 0 430 241 86 70 chr1 65017862 65017975 -177646378 + MIR SINE MIR 142 262 0 304 276 67 19 chr1 65018496 65018601 -177645752 - MIR SINE MIR -125 137 28 395 92 0 92 chr1 65018620 65018707 -177645646 - MADE1 DNA Mariner -1 79 1 409 245 135 22 chr1 65019088 65019268 -177645085 + MIR SINE MIR 58 256 -6 2092 117 0 21 chr1 65019442 65019732 -177644621 - AluSx SINE Alu -28 284 1 252 0 0 0 chr1 65019748 65019776 -177644577 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr1 65020485 65020507 -177643846 + AT_rich Low_complexity Low_complexity 1 22 0 241 301 65 32 chr1 65021140 65021263 -177643090 + MIR SINE MIR 2 128 -134 331 308 26 41 chr1 65021312 65021490 -177642863 + MIR SINE MIR 20 196 -66 213 39 0 0 chr1 65021490 65021516 -177642837 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 331 308 26 41 chr1 65021516 65021532 -177642821 + MIR SINE MIR 196 211 -51 280 265 26 59 chr1 65021719 65021855 -177642498 + MLT1L LTR MaLR 86 217 -371 326 287 118 19 chr1 65021920 65022160 -177642193 + MLT1K LTR MaLR 340 588 0 357 302 41 52 chr1 65022160 65022306 -177642047 + MIR SINE MIR 81 226 -36 1885 126 89 20 chr1 65022306 65022655 -177641698 + THE1C LTR MaLR 1 373 -2 357 302 41 52 chr1 65022655 65022680 -177641673 + MIR SINE MIR 226 250 -12 397 287 87 13 chr1 65022707 65022857 -177641496 - MIR SINE MIR -36 226 66 264 279 16 0 chr1 65023039 65023100 -177641253 - tRNA-Ile-ATT tRNA tRNA -15 62 1 237 297 118 15 chr1 65024018 65024170 -177640183 + MIR SINE MIR 17 189 -63 21 0 0 0 chr1 65024234 65024255 -177640098 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 65025453 65025485 -177638868 + AT_rich Low_complexity Low_complexity 1 32 0 1186 274 75 29 chr1 65025785 65025904 -177638449 + HAL1 LINE L1 1886 1998 -509 2434 100 43 6 chr1 65025904 65026255 -177638098 + THE1B LTR MaLR 1 364 0 1186 274 75 29 chr1 65026255 65026719 -177637634 + HAL1 LINE L1 1998 2496 -11 446 268 151 38 chr1 65026830 65027179 -177637174 - L2 LINE L2 -167 3146 2764 1043 278 36 13 chr1 65027182 65027488 -177636865 - MER115 DNA AcHobo -3 690 378 430 339 80 27 chr1 65027475 65027699 -177636654 - MER115 DNA AcHobo -427 266 31 * 497 262 66 0 chr1 65027970 65028092 -177636261 + MER94 DNA DNA 4 133 -1 274 253 182 0 chr1 65028367 65028466 -177635887 - L2 LINE L2 -5 3308 3192 229 310 0 53 chr1 65028603 65028716 -177635637 - L1ME LINE L1 -484 5637 5531 311 215 118 21 chr1 65028770 65028863 -177635490 - MIR3 SINE MIR -5 203 102 3434 119 60 10 chr1 65028874 65029455 -177634898 + L1MC1 LINE L1 5677 6286 -47 252 0 0 0 chr1 65029499 65029527 -177634826 + (A)n Simple_repeat Simple_repeat 1 28 0 258 297 148 10 chr1 65030519 65030620 -177633733 - MIR SINE MIR -101 161 47 888 326 167 28 chr1 65030804 65031564 -177632789 - L2 LINE L2 0 3313 2447 22 0 0 0 chr1 65032284 65032306 -177632047 + AT_rich Low_complexity Low_complexity 1 22 0 340 279 110 68 chr1 65032336 65032601 -177631752 - L1M4 LINE L1 -3104 3042 2757 1560 102 4 55 chr1 65032601 65032730 -177631623 - L1PB1 LINE L1 -1 6150 6039 2201 100 7 0 chr1 65032730 65033020 -177631333 - AluSp SINE Alu -21 292 1 1560 102 4 55 chr1 65033020 65033144 -177631209 - L1PB1 LINE L1 -112 6039 5910 340 279 110 68 chr1 65033144 65033233 -177631120 - L1M4 LINE L1 -3389 2757 2673 44055 40 0 2 chr1 65033233 65035066 -177629287 + L1PA4 LINE L1 7 1842 -4313 2524 61 6 6 chr1 65035066 65035377 -177628976 - AluY SINE Alu 0 311 1 44055 40 0 2 chr1 65035377 65039695 -177624658 + L1PA4 LINE L1 1842 6147 -8 342 370 35 18 chr1 65041141 65041368 -177622985 + L1MC4a LINE L1 7163 7393 -415 262 272 97 18 chr1 65041523 65041740 -177622613 + L1MC5 LINE L1 7497 7730 -231 3219 168 26 12 chr1 65041742 65042319 -177622034 + MER34C LTR ERV1 1 585 0 740 164 53 6 chr1 65042915 65043086 -177621267 + LTR37A LTR ERV1 246 424 -2 24 53 0 0 chr1 65043180 65043218 -177621135 + AT_rich Low_complexity Low_complexity 1 38 0 1238 168 0 19 chr1 65043334 65043548 -177620805 + L1MA7 LINE L1 5825 6034 -257 961 198 0 35 chr1 65043550 65043747 -177620606 + AluJo SINE Alu 85 274 -38 438 20 0 0 chr1 65043748 65043799 -177620554 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1218 187 33 0 chr1 65043799 65044040 -177620313 + L1MA7 LINE L1 6017 6265 -26 22 56 0 0 chr1 65044040 65044076 -177620277 + AT_rich Low_complexity Low_complexity 1 36 0 385 225 143 50 chr1 65045657 65045943 -177618410 + L2 LINE L2 2694 3058 -255 744 227 38 22 chr1 65046007 65046192 -177618161 + MLT1A2 LTR MaLR 1 188 -186 411 195 154 41 chr1 65046229 65046352 -177618001 + L2 LINE L2 3176 3312 -1 263 339 74 51 chr1 65046526 65046783 -177617570 + L2 LINE L2 2034 2296 -1018 2003 177 8 16 chr1 65047758 65048126 -177616227 + MLT1A1 LTR MaLR 1 365 0 1786 261 66 27 chr1 65048183 65048974 -177615379 + L2 LINE L2 2495 3313 0 2104 100 11 0 chr1 65049228 65049507 -177614846 - AluSx SINE Alu -15 297 16 565 163 0 81 chr1 65050550 65050673 -177613680 - L1PA10 LINE L1 0 6168 6056 36 23 0 0 chr1 65051365 65051408 -177612945 + AT_rich Low_complexity Low_complexity 1 43 0 22 88 0 0 chr1 65051717 65051774 -177612579 + AT_rich Low_complexity Low_complexity 1 57 0 386 279 36 0 chr1 65051838 65052003 -177612350 + (TA)n Simple_repeat Simple_repeat 2 172 0 2666 260 70 62 chr1 65052599 65053640 -177610713 + L1MB1 LINE L1 4 1053 -4838 10406 172 40 29 chr1 65053647 65055636 -177608717 + L1MB1 LINE L1 2688 4725 -1267 1482 183 71 0 chr1 65055636 65055904 -177608449 + AluJb SINE Alu 1 287 -25 10406 172 40 29 chr1 65055904 65057181 -177607172 + L1MB1 LINE L1 4725 5986 -6 2116 146 30 16 chr1 65057306 65057676 -177606677 + THE1C LTR MaLR 1 375 0 946 228 0 77 chr1 65057985 65058218 -177606135 - MIR SINE MIR -28 234 20 515 217 250 0 chr1 65059143 65059295 -177605058 + MIR SINE MIR 73 262 0 23 33 0 0 chr1 65059681 65059711 -177604642 + AT_rich Low_complexity Low_complexity 1 30 0 525 305 8 0 chr1 65060040 65060171 -177604182 + MIR3 SINE MIR 71 202 -6 322 319 102 12 chr1 65061349 65061515 -177602838 - MIR SINE MIR -78 184 4 21 0 0 0 chr1 65061890 65061911 -177602442 + AT_rich Low_complexity Low_complexity 1 21 0 2103 113 3 3 chr1 65062175 65062466 -177601887 + AluSp SINE Alu 1 291 -22 220 125 50 0 chr1 65062466 65062506 -177601847 + G-rich Low_complexity Low_complexity 4 45 0 1045 120 0 6 chr1 65062508 65062675 -177601678 + (GAGAA)n Simple_repeat Simple_repeat 4 169 0 421 331 105 55 chr1 65062709 65063090 -177601263 - L2 LINE L2 -625 2689 2290 595 256 30 36 chr1 65063148 65063316 -177601037 - MIR SINE MIR -94 168 2 626 113 9 17 chr1 65063511 65063626 -177600727 - L1MA3 LINE L1 0 6305 6192 240 287 24 11 chr1 65064073 65064249 -177600104 + L1MDa LINE L1 1581 1859 -5098 1474 156 23 0 chr1 65064281 65064537 -177599816 + L1PA16 LINE L1 5905 6166 0 640 223 10 64 chr1 65064537 65064787 -177599566 + L1ME LINE L1 5193 5430 -732 3281 262 78 30 chr1 65064824 65066448 -177597905 + L1MDa LINE L1 3015 4742 -2215 1072 101 38 0 chr1 65066448 65066607 -177597746 + L1PA11 LINE L1 6006 6170 -4 3281 262 78 30 chr1 65066607 65066843 -177597510 + L1MDa LINE L1 4742 4965 -1992 13976 126 100 9 chr1 65066854 65067891 -177596462 - Tigger2 DNA MER2_type 0 2718 1777 2479 70 0 0 chr1 65067891 65068190 -177596163 + AluY SINE Alu 1 299 -12 13976 126 100 9 chr1 65068190 65069643 -177594710 - Tigger2 DNA MER2_type -941 1777 1 1362 226 99 32 chr1 65069668 65070322 -177594031 + L1MDa LINE L1 5099 5796 -1161 387 374 28 6 chr1 65072499 65072681 -177591672 + MIR SINE MIR 6 191 -71 354 202 11 53 chr1 65072686 65072749 -177591604 - MIR SINE MIR 0 262 203 1170 211 5 5 chr1 65072749 65072967 -177591386 + MER20 DNA MER1_type 2 219 0 354 202 11 53 chr1 65072967 65072997 -177591356 - MIR SINE MIR -59 203 173 318 250 13 13 chr1 65073934 65074010 -177590343 - MER2 DNA MER2_type 0 345 270 850 132 44 66 chr1 65074039 65074146 -177590207 - MER2 DNA MER2_type -140 205 102 2438 81 0 3 chr1 65074146 65074454 -177589899 - AluY SINE Alu -4 307 1 850 132 44 66 chr1 65074454 65074528 -177589825 - MER2 DNA MER2_type -243 102 28 21 36 0 0 chr1 65074604 65074632 -177589721 + AT_rich Low_complexity Low_complexity 1 28 0 528 289 78 15 chr1 65075203 65075407 -177588946 - MIR SINE MIR -5 257 41 2145 122 3 0 chr1 65075984 65076280 -177588073 - AluSg SINE Alu -13 297 1 1916 165 13 7 chr1 65076796 65077099 -177587254 - AluJb SINE Alu -7 305 1 21 57 0 0 chr1 65077374 65077409 -177586944 + AT_rich Low_complexity Low_complexity 1 35 0 303 329 96 2 chr1 65077538 65077687 -177586666 + MIR SINE MIR 14 172 -66 25 65 0 0 chr1 65077911 65077957 -177586396 + AT_rich Low_complexity Low_complexity 1 46 0 1844 141 0 26 chr1 65078925 65079230 -177585123 + AluJb SINE Alu 1 297 -15 2148 102 20 7 chr1 65079594 65079889 -177584464 + AluSc SINE Alu 1 299 -10 432 287 94 30 chr1 65080195 65080397 -177583956 - L2 LINE L2 0 3313 3099 417 312 45 26 chr1 65080509 65080663 -177583690 - L2 LINE L2 -200 3072 2916 207 0 0 0 chr1 65081335 65081358 -177582995 + (TC)n Simple_repeat Simple_repeat 2 24 0 277 288 315 0 chr1 65081365 65081511 -177582842 - MIR SINE MIR -58 204 13 306 283 83 14 chr1 65082346 65082491 -177581862 + L3b LINE CR1 1186 1340 -243 24 0 0 0 chr1 65082965 65082989 -177581364 + AT_rich Low_complexity Low_complexity 1 24 0 3653 247 61 25 chr1 65083979 65085252 -177579101 + L1MEc LINE L1 139 1457 -4939 2283 88 54 0 chr1 65085300 65085596 -177578757 + AluSx SINE Alu 1 312 0 311 233 98 45 chr1 65085612 65085745 -177578608 + L1ME3A LINE L1 5888 6027 -143 1025 142 12 6 chr1 65085752 65085914 -177578439 + AluSg/x SINE Alu 147 309 -3 259 276 81 11 chr1 65086613 65086700 -177577653 - L2 LINE L2 -47 3225 3133 22 0 0 0 chr1 65088017 65088039 -177576314 + AT_rich Low_complexity Low_complexity 1 22 0 365 271 158 46 chr1 65088062 65088091 -177576262 - MER102b DNA MER1_type -1087 341 317 830 193 149 0 chr1 65088091 65088272 -177576081 + MER3 DNA MER1_type 2 209 0 365 271 158 46 chr1 65088272 65088482 -177575871 - MER102b DNA MER1_type -1111 317 75 444 234 0 37 chr1 65088536 65088643 -177575710 - L2 LINE L2 0 3313 3211 343 261 59 39 chr1 65088676 65088829 -177575524 + L1ME4a LINE L1 5954 6109 -12 1984 147 3 10 chr1 65088866 65089166 -177575187 - AluSx SINE Alu -14 298 1 712 167 43 22 chr1 65089167 65089305 -177575048 - AluJb SINE Alu -169 143 3 308 314 100 78 chr1 65090726 65091185 -177573168 + L1M2 LINE L1 875 1343 -5506 296 223 128 88 chr1 65091501 65091649 -177572704 - L2 LINE L2 -1 3312 3159 827 305 24 4 chr1 65091879 65092128 -177572225 - HERV16 LTR ERVL -2073 2923 2670 1185 240 37 62 chr1 65092145 65092579 -177571774 - HERV16 LTR ERVL -2583 2413 1991 254 285 61 79 chr1 65092607 65092821 -177571532 - HERV16 LTR ERVL -3716 1938 1729 1511 292 54 13 chr1 65092898 65093494 -177570859 - HERV16 LTR ERVL -3419 1577 958 3030 102 25 11 chr1 65093503 65093973 -177570380 + LTR15 LTR ERV1 1 477 -16 576 287 54 45 chr1 65093989 65094320 -177570033 - HERV16 LTR ERVL -4046 950 617 505 339 50 17 chr1 65094400 65094881 -177569472 - HERV16 LTR ERVL -4489 507 11 1352 281 48 11 chr1 65094903 65095337 -177569016 - LTR16B LTR ERVL -10 454 5 1278 212 53 36 chr1 65095427 65095786 -177568567 + MLT1A1 LTR MaLR 1 365 0 373 247 95 76 chr1 65096154 65096400 -177567953 + LTR16A LTR ERVL 96 365 -85 1958 146 0 17 chr1 65096400 65096527 -177567826 + AluSx SINE Alu 1 129 -183 330 26 0 0 chr1 65096527 65096566 -177567787 + (CA)n Simple_repeat Simple_repeat 2 40 0 1958 146 0 17 chr1 65096566 65096740 -177567613 + AluSx SINE Alu 129 297 -15 373 247 95 76 chr1 65096740 65096828 -177567525 + LTR16A LTR ERVL 365 450 0 269 233 82 0 chr1 65097421 65097494 -177566859 + L2 LINE L2 2611 2689 -625 296 205 39 0 chr1 65097693 65097771 -177566582 - L1ME4a LINE L1 -54 6067 5987 261 276 70 30 chr1 65097823 65098171 -177566182 - L1M1 LINE L1 -726 5440 5093 304 222 40 62 chr1 65098652 65098828 -177565525 - L1M4 LINE L1 -1519 4627 4456 217 229 21 0 chr1 65098877 65098925 -177565428 - MIR3 SINE MIR -3 205 157 2424 69 0 3 chr1 65098929 65099233 -177565120 + AluY SINE Alu 1 303 -8 432 315 50 17 chr1 65099309 65099550 -177564803 - L1MC4a LINE L1 -1875 5933 5685 708 167 191 0 chr1 65099758 65099920 -177564433 - L1MC1 LINE L1 -13 6320 6128 1473 244 28 37 chr1 65100337 65100795 -177563558 - LTR16C LTR ERVL -37 454 1 515 201 144 23 chr1 65101034 65101208 -177563145 - MLT1C LTR MaLR -204 263 69 732 194 0 0 chr1 65101210 65101344 -177563009 - AluSg/x SINE Alu -5 305 172 5979 195 24 44 chr1 65101590 65103294 -177561059 + L1MC1 LINE L1 3440 5177 -1156 2324 91 0 0 chr1 65103294 65103592 -177560761 - AluY SINE Alu -13 298 1 5979 195 24 44 chr1 65103592 65104354 -177559999 + L1MC1 LINE L1 5177 5837 -496 771 168 0 38 chr1 65104354 65104512 -177559841 + FLAM_A SINE Alu 1 133 0 5979 195 24 44 chr1 65104512 65104981 -177559372 + L1MC1 LINE L1 5837 6314 -19 2916 176 12 4 chr1 65105007 65105519 -177558834 + MLT2B1 LTR ERVL 5 520 0 444 306 18 18 chr1 65105546 65105716 -177558637 + MLT1K LTR MaLR 419 588 0 284 308 43 34 chr1 65105724 65105841 -177558512 + L2 LINE L2 2936 3053 -219 7569 81 6 1 chr1 65106440 65108279 -177556074 + L1PA7 LINE L1 4305 6159 0 186 43 0 0 chr1 65108419 65108442 -177555911 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 3839 126 60 3 chr1 65108517 65109096 -177555257 + LTR9 LTR ERV1 1 612 0 1191 204 157 15 chr1 65109105 65109506 -177554847 + MLT1C LTR MaLR 10 467 0 1648 184 0 0 chr1 65109667 65109949 -177554404 - 7SLRNA srpRNA srpRNA -35 285 4 637 174 30 0 chr1 65110422 65110554 -177553799 - MER39B LTR ERV1 0 653 518 243 78 98 20 chr1 65110545 65110596 -177553757 - LTR29 LTR ERV1 -178 444 390 * 1066 248 69 13 chr1 65110628 65110946 -177553407 - LTR48B LTR ERV1 -308 336 1 875 206 125 7 chr1 65110946 65111199 -177553154 + MER46C DNA MER2_type 28 312 -26 584 268 60 21 chr1 65111210 65111445 -177552908 - L1ME LINE L1 -348 5773 5530 264 231 333 0 chr1 65111634 65111751 -177552602 + MER91A DNA MER1_type 19 174 -22 212 292 153 0 chr1 65111753 65111825 -177552528 + MER91A DNA MER1_type 78 160 -36 233 204 20 41 chr1 65111826 65111875 -177552478 + MER91A DNA MER1_type 127 174 -22 1793 144 24 3 chr1 65111938 65112229 -177552124 + AluJb SINE Alu 1 297 -15 493 256 0 33 chr1 65112572 65112693 -177551660 - L2 LINE L2 0 3313 3197 882 195 41 38 chr1 65112727 65112961 -177551392 - MIR SINE MIR 0 262 36 1103 302 87 61 chr1 65113154 65113680 -177550673 + L2 LINE L2 2035 2585 -729 2354 91 3 3 chr1 65113680 65113977 -177550376 - AluSp SINE Alu -15 298 2 1103 302 87 61 chr1 65113977 65114138 -177550215 + L2 LINE L2 2585 2740 -574 391 303 64 25 chr1 65114347 65114632 -177549721 + L2 LINE L2 2771 3073 -199 636 192 8 23 chr1 65114762 65114892 -177549461 - LTR67 LTR ERVL -2 555 428 272 277 44 54 chr1 65115520 65115658 -177548695 - MIR SINE MIR -63 145 39 625 228 56 28 chr1 65116553 65116733 -177547620 + MIR3 SINE MIR 24 208 0 210 37 0 0 chr1 65116988 65117015 -177547338 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 290 282 134 28 chr1 65117418 65117560 -177546793 - MIR SINE MIR -17 245 89 236 245 198 9 chr1 65117843 65117949 -177546404 + MIR3 SINE MIR 54 179 -29 1988 129 0 0 chr1 65118622 65118908 -177545445 + AluSx SINE Alu 3 288 -24 208 292 0 0 chr1 65120302 65120367 -177543986 + (CGA)n Simple_repeat Simple_repeat 2 66 0 192 97 0 0 chr1 65121121 65121152 -177543201 + (CAG)n Simple_repeat Simple_repeat 1 31 0 217 254 167 35 chr1 65121736 65121850 -177542503 - MIR SINE MIR -56 206 78 2344 78 0 13 chr1 65122601 65122910 -177541443 - AluSp SINE Alu -7 306 2 2069 54 0 8 chr1 65122913 65123171 -177541182 - AluY SINE Alu 0 311 56 577 197 79 90 chr1 65123445 65123623 -177540730 + MIR SINE MIR 81 256 -6 198 0 0 0 chr1 65123656 65123678 -177540675 + (CAT)n Simple_repeat Simple_repeat 1 22 0 250 275 56 0 chr1 65123887 65123976 -177540377 + MIR SINE MIR 95 189 -63 2067 105 0 3 chr1 65124573 65124882 -177539471 - AluSq SINE Alu 0 308 1 32 0 0 0 chr1 65124884 65124916 -177539437 + AT_rich Low_complexity Low_complexity 1 32 0 528 269 27 34 chr1 65125316 65125465 -177538888 + MIR SINE MIR 4 151 -111 439 296 13 50 chr1 65126028 65126187 -177538166 - MIR SINE MIR -78 184 32 194 140 0 20 chr1 65126342 65126392 -177537961 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 8056 11 0 0 chr1 65126392 65127413 -177536940 - L1PA3 LINE L1 -3 6152 5132 278 277 219 15 chr1 65128044 65128181 -177536172 - MIR SINE MIR -57 205 41 665 273 113 46 chr1 65128968 65129294 -177535059 - L3 LINE CR1 -16 1561 1214 393 285 162 6 chr1 65129600 65129779 -177534574 - MIR SINE MIR 0 262 56 901 182 20 0 chr1 65129798 65129946 -177534407 - FRAM SINE Alu -15 151 1 237 33 0 0 chr1 65130993 65131023 -177533330 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 305 271 73 21 chr1 65131026 65131122 -177533231 - L2 LINE L2 -21 3251 3151 204 322 51 0 chr1 65131115 65131174 -177533179 + L2 LINE L2 3209 3270 -2 * 241 206 192 27 chr1 65131718 65131791 -177532562 - MIR SINE MIR -92 116 32 * 870 222 32 11 chr1 65131785 65131970 -177532383 + MIR SINE MIR 18 206 -56 270 170 45 134 chr1 65131988 65132071 -177532282 - MER58 DNA MER1_type 0 2420 2348 1736 162 14 0 chr1 65132071 65132367 -177531986 + AluJb SINE Alu 1 300 -12 270 170 45 134 chr1 65132367 65132395 -177531958 - MER58 DNA MER1_type -72 2348 2319 240 177 167 146 chr1 65132393 65132421 -177531932 - MER58 DNA MER1_type -113 102 76 * 1433 179 25 4 chr1 65132421 65132701 -177531652 + AluJb SINE Alu 1 286 -26 240 177 167 146 chr1 65132701 65132768 -177531585 - MER58 DNA MER1_type -139 76 2 307 222 0 0 chr1 65132769 65132823 -177531530 + MIR SINE MIR 209 262 0 602 245 49 25 chr1 65133318 65133481 -177530872 - MIR3 SINE MIR -21 187 21 244 294 15 0 chr1 65133610 65133678 -177530675 - L2 LINE L2 0 3272 3204 475 248 85 35 chr1 65133763 65133904 -177530449 - L2 LINE L2 -1 3312 3165 304 277 0 24 chr1 65133907 65133990 -177530363 + MER63A DNA MER1_type 2 82 0 281 258 48 0 chr1 65133994 65134056 -177530297 - MIR SINE MIR -180 82 18 235 268 183 14 chr1 65134053 65134124 -177530229 + MIR SINE MIR 34 116 -92 * 393 250 23 0 chr1 65134189 65134277 -177530076 + MER63A DNA MER1_type 93 182 -28 1050 217 47 12 chr1 65134300 65134553 -177529800 - L2 LINE L2 -173 3140 2879 1091 243 149 36 chr1 65135130 65135632 -177528721 + MLT1F1 LTR MaLR 1 559 -8 440 264 27 36 chr1 65135637 65135799 -177528554 - MIR SINE MIR -62 146 8 507 244 138 12 chr1 65136051 65136267 -177528086 - MIR SINE MIR -6 256 16 619 289 111 9 chr1 65136430 65136655 -177527698 - MIR SINE MIR 0 262 15 375 309 130 0 chr1 65137119 65137242 -177527111 - L2 LINE L2 0 3272 3134 192 254 0 0 chr1 65137294 65137353 -177527000 + CT-rich Low_complexity Low_complexity 3 61 0 464 254 51 8 chr1 65137364 65137482 -177526871 - L2 LINE L2 -2 3311 3189 359 340 50 29 chr1 65137508 65137749 -177526604 - L2 LINE L2 -494 2820 2575 2793 6 0 0 chr1 65138003 65138314 -177526039 - AluYa5 SINE Alu 0 311 1 1199 214 84 16 chr1 65138372 65138694 -177525659 + MLT1H1 LTR MaLR 212 555 0 563 284 60 22 chr1 65139010 65139242 -177525111 + MLT1L LTR MaLR 366 606 -9 661 273 36 16 chr1 65139507 65139756 -177524597 - MIR SINE MIR -4 258 5 2163 106 0 16 chr1 65139843 65140154 -177524199 + AluSc SINE Alu 1 306 -3 203 253 21 116 chr1 65240175 65240237 -177424116 - L2 LINE L2 -215 3057 3005 2232 128 0 0 chr1 65240237 65240535 -177423818 + AluSx SINE Alu 1 298 -14 203 253 21 116 chr1 65240535 65240567 -177423786 - L2 LINE L2 -267 3005 2972 390 60 30 15 chr1 65240577 65240644 -177423709 + (GAAAA)n Simple_repeat Simple_repeat 3 70 0 566 289 127 11 chr1 65240644 65240888 -177423465 - L2 LINE L2 -308 3005 2740 431 331 41 25 chr1 65241629 65241943 -177422410 + LTR16C LTR ERVL 173 491 0 287 369 5 40 chr1 65241943 65242141 -177422212 - L2 LINE L2 -242 3030 2840 520 227 49 37 chr1 65242741 65242904 -177421449 - MER104 DNA Tc2 0 180 16 300 297 51 87 chr1 65242906 65243044 -177421309 + L2 LINE L2 3139 3271 -1 2186 145 68 31 chr1 65243050 65243463 -177420890 - MSTA LTR MaLR 0 428 1 410 304 74 15 chr1 65244554 65244724 -177419629 + MIR SINE MIR 10 190 -69 183 350 38 12 chr1 65245710 65245790 -177418563 + MIR SINE MIR 65 146 -116 580 249 174 28 chr1 65246199 65246520 -177417833 - MLT1J LTR MaLR -52 459 92 1192 271 91 58 chr1 65246522 65247304 -177417049 + L2 LINE L2 2477 3305 -8 368 259 46 0 chr1 65247317 65247425 -177416928 + MLT1K LTR MaLR 411 523 -65 1273 320 54 21 chr1 65247533 65247927 -177416426 - L2 LINE L2 -258 3055 2629 306 0 0 0 chr1 65247927 65247961 -177416392 + (TG)n Simple_repeat Simple_repeat 2 35 0 1273 320 54 21 chr1 65247961 65248238 -177416115 - L2 LINE L2 -684 2629 2363 2361 103 0 0 chr1 65248697 65249009 -177415344 - AluSx SINE Alu 0 312 1 492 126 0 35 chr1 65249040 65249127 -177415226 + HY4 scRNA scRNA 10 93 0 549 309 6 34 chr1 65249422 65249600 -177414753 + MIR SINE MIR 20 192 -70 1672 176 26 58 chr1 65249806 65250186 -177414167 - MLT1A2 LTR MaLR -6 368 1 2089 156 88 14 chr1 65250272 65250715 -177413638 - L1MB7 LINE L1 -8 6176 5701 811 295 97 55 chr1 65251675 65252188 -177412165 - MLT1H1 LTR MaLR -11 531 5 479 275 142 21 chr1 65252226 65252459 -177411894 - MIR SINE MIR -1 261 1 2263 123 0 0 chr1 65252936 65253237 -177411116 + AluSc SINE Alu 1 301 -8 268 267 11 0 chr1 65253299 65253389 -177410964 - MER20B DNA MER1_type -152 631 541 309 286 79 0 chr1 65253477 65253603 -177410750 - MER5C DNA MER1_type -188 136 1 * 555 219 0 9 chr1 65253603 65253714 -177410639 - MIR SINE MIR -64 198 89 839 232 17 34 chr1 65254573 65254810 -177409543 - MIR SINE MIR -11 251 19 2593 46 0 0 chr1 65254854 65255157 -177409196 + AluY SINE Alu 1 303 -8 330 147 77 35 chr1 65255573 65255743 -177408610 + (TA)n Simple_repeat Simple_repeat 1 177 0 256 235 22 44 chr1 65255739 65255922 -177408431 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 * 378 205 47 23 chr1 65255943 65256251 -177408102 + (TATAA)n Simple_repeat Simple_repeat 1 315 0 302 167 49 31 chr1 65256260 65256422 -177407931 + (TA)n Simple_repeat Simple_repeat 1 165 0 328 250 45 9 chr1 65256427 65256539 -177407814 + (TATATG)n Simple_repeat Simple_repeat 5 120 0 297 225 22 28 chr1 65256540 65256718 -177407635 + (TA)n Simple_repeat Simple_repeat 2 178 0 300 222 23 28 chr1 65256734 65256910 -177407443 + (TA)n Simple_repeat Simple_repeat 1 175 0 308 251 11 27 chr1 65256926 65257109 -177407244 + (TA)n Simple_repeat Simple_repeat 1 180 0 314 278 11 11 chr1 65257115 65257205 -177407148 - L1MC4 LINE L1 -1339 6703 6614 370 235 10 29 chr1 65257223 65257325 -177407028 + MIR SINE MIR 49 148 -114 448 96 51 45 chr1 65257334 65257511 -177406842 + (TA)n Simple_repeat Simple_repeat 1 178 0 455 208 35 29 chr1 65257519 65257692 -177406661 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 354 192 43 31 chr1 65257704 65258107 -177406246 + (TATAA)n Simple_repeat Simple_repeat 1 407 0 * 365 112 82 41 chr1 65258088 65258306 -177406047 + (TA)n Simple_repeat Simple_repeat 1 226 0 236 175 79 32 chr1 65258329 65258392 -177405961 - MIR SINE MIR -108 154 89 251 359 0 11 chr1 65259312 65259404 -177404949 - L2 LINE L2 -251 3021 2931 208 291 18 0 chr1 65259516 65259571 -177404782 - L2 LINE L2 -1 3312 3257 2163 125 20 0 chr1 65259623 65259927 -177404426 + AluSx SINE Alu 1 310 -2 2459 65 0 10 chr1 65259981 65260288 -177404065 + AluY SINE Alu 1 304 -7 239 316 42 11 chr1 65260597 65260692 -177403661 + L2 LINE L2 2553 2650 -664 2634 125 29 2 chr1 65260999 65261414 -177402939 - MSTA LTR MaLR -2 426 1 2555 119 53 12 chr1 65261615 65262026 -177402327 - MSTA LTR MaLR 0 428 1 2373 85 3 0 chr1 65262047 65262340 -177402013 + AluSp SINE Alu 2 295 -18 239 229 29 14 chr1 65262365 65262435 -177401918 - LTR33A LTR ERVL -9 514 444 2198 153 18 20 chr1 65262711 65263102 -177401251 + MLT1B LTR MaLR 1 390 0 298 361 41 0 chr1 65263540 65263637 -177400716 + L2 LINE L2 3179 3279 -34 252 305 88 73 chr1 65263919 65264191 -177400162 - L2 LINE L2 -159 3113 2838 237 217 121 0 chr1 65264271 65264354 -177399999 + L1ME LINE L1 5713 5805 -316 301 109 0 0 chr1 65264443 65264489 -177399864 - MADE1 DNA Mariner -34 46 1 2100 113 6 22 chr1 65264601 65264943 -177399410 + AluSg SINE Alu 1 310 0 375 325 86 0 chr1 65265575 65265692 -177398661 + L2 LINE L2 3145 3271 -1 607 306 106 4 chr1 65265717 65265972 -177398381 - L3 LINE CR1 -340 1237 957 274 330 83 9 chr1 65266157 65266266 -177398087 - MIR SINE MIR -24 238 122 367 313 11 11 chr1 65266268 65266399 -177397954 + MIR SINE MIR 56 185 -62 201 163 93 0 chr1 65267030 65267073 -177397280 - L3 LINE CR1 -5 1572 1526 566 325 42 45 chr1 65267076 65267411 -177396942 + MER102b DNA MER1_type 4 337 -4 481 210 143 0 chr1 65267414 65267533 -177396820 - MIR3 SINE MIR -43 165 30 230 276 44 0 chr1 65267924 65267937 -177396416 + MIR SINE MIR 97 108 -100 2296 45 0 32 chr1 65267937 65268246 -177396107 + AluY SINE Alu 1 299 -12 230 276 44 0 chr1 65268246 65268314 -177396039 + MIR SINE MIR 108 151 -57 525 254 9 0 chr1 65268542 65268652 -177395701 + MER5B DNA MER1_type 13 123 -55 419 206 200 31 chr1 65268911 65269071 -177395282 + MLT1L LTR MaLR 104 290 -325 303 267 0 35 chr1 65269247 65269333 -177395020 - MIR SINE MIR -6 256 174 2142 106 0 0 chr1 65269374 65269677 -177394676 - AluSx SINE Alu -9 303 1 492 288 35 29 chr1 65269697 65269867 -177394486 + MIR SINE MIR 78 248 -14 386 275 14 42 chr1 65269919 65270034 -177394319 - MIR SINE MIR -67 141 47 1691 100 0 4 chr1 65270034 65270264 -177394089 - AluSg/x SINE Alu -11 301 73 386 275 14 42 chr1 65270264 65270293 -177394060 - MIR SINE MIR -161 47 19 690 281 148 54 chr1 65270506 65270911 -177393442 - L3 LINE CR1 -1 1576 1134 36 40 0 0 chr1 65271661 65271711 -177392642 + AT_rich Low_complexity Low_complexity 1 50 0 207 284 98 20 chr1 65272543 65272645 -177391708 - MIR SINE MIR -26 236 127 640 357 71 31 chr1 65272671 65273344 -177391009 + L2 LINE L2 2148 2847 -467 460 283 8 17 chr1 65273363 65273483 -177390870 + L2 LINE L2 2948 3066 -206 518 310 90 24 chr1 65273491 65273826 -177390527 + LTR33 LTR ERVL 165 521 0 660 183 63 16 chr1 65274044 65274170 -177390183 + FLAM_C SINE Alu 2 133 -10 442 299 97 0 chr1 65274189 65274323 -177390030 + L2 LINE L2 3126 3272 0 422 205 0 0 chr1 65274529 65274607 -177389746 + AluJ/FLAM SINE Alu 1 78 -224 624 178 47 0 chr1 65274612 65274741 -177389612 + AluJo SINE Alu 5 139 -173 318 275 37 0 chr1 65274748 65274857 -177389496 + 5S rRNA rRNA 9 121 0 2071 86 3 36 chr1 65274876 65275180 -177389173 + AluSp SINE Alu 20 313 0 1004 166 17 0 chr1 65275182 65275357 -177388996 + AluJo SINE Alu 131 308 -4 542 322 35 20 chr1 65275842 65276041 -177388312 + MIR SINE MIR 2 203 -59 390 310 134 43 chr1 65276015 65276497 -177387856 + L2 LINE L2 2766 3272 0 * 619 274 212 0 chr1 65276884 65277096 -177387257 + MIR SINE MIR 6 262 0 297 311 80 26 chr1 65277107 65277258 -177387095 + MIR SINE MIR 75 233 -29 300 289 121 51 chr1 65277314 65277646 -177386707 + L2 LINE L2 1474 1828 -1486 263 341 11 0 chr1 65278315 65278406 -177385947 - MIR SINE MIR -51 211 120 225 262 149 65 chr1 65278436 65278543 -177385810 - MIR SINE MIR -21 241 126 * 233 280 91 103 chr1 65278532 65278666 -177385687 + MIR SINE MIR 16 150 -58 2215 106 3 0 chr1 65278666 65278969 -177385384 + AluSg SINE Alu 1 304 -6 233 280 91 103 chr1 65278969 65279009 -177385344 + MIR SINE MIR 150 189 -19 1927 128 10 7 chr1 65279227 65279524 -177384829 - AluSx SINE Alu -14 298 1 464 284 167 0 chr1 65279596 65279758 -177384595 + MIR SINE MIR 74 262 0 382 242 99 0 chr1 65280321 65280412 -177383941 - L2 LINE L2 -19 3294 3195 341 308 11 8 chr1 65280447 65280566 -177383787 - MIR SINE MIR -83 125 3 406 240 149 19 chr1 65280839 65280993 -177383360 + MIR3 SINE MIR 25 198 -10 242 328 180 0 chr1 65281252 65281374 -177382979 + L2 LINE L2 3129 3272 0 256 286 14 29 chr1 65281483 65281553 -177382800 - MIR SINE MIR -138 124 56 382 270 66 29 chr1 65281665 65281802 -177382551 + MIR SINE MIR 13 154 -108 364 321 99 8 chr1 65283324 65283455 -177380898 + MIR3 SINE MIR 2 144 -64 448 310 39 7 chr1 65283555 65283710 -177380643 + MIR SINE MIR 103 262 0 302 267 164 30 chr1 65284344 65284509 -177379844 - MIR SINE MIR -26 236 50 443 298 72 34 chr1 65285234 65285442 -177378911 - L1ME4a LINE L1 -1 6120 5905 576 224 97 12 chr1 65285824 65285989 -177378364 + MIR SINE MIR 79 257 -5 372 290 166 7 chr1 65286107 65286252 -177378101 + MER5A DNA MER1_type 16 183 -6 406 271 81 81 chr1 65286434 65286681 -177377672 + MIR SINE MIR 10 256 -6 310 338 110 0 chr1 65286682 65286818 -177377535 + MIR3 SINE MIR 37 187 -21 2656 10 0 0 chr1 65286974 65287272 -177377081 - AluYa5 SINE Alu -13 298 1 2311 51 0 39 chr1 65287462 65287774 -177376579 + AluY SINE Alu 12 311 0 250 303 15 0 chr1 65287997 65288063 -177376290 - L2 LINE L2 0 3272 3206 364 207 92 23 chr1 65288103 65288190 -177376163 + Charlie8 DNA MER1_type 128 220 -2197 184 320 0 0 chr1 65288537 65288587 -177375766 - L2 LINE L2 -219 3053 3004 636 314 87 73 chr1 65288836 65289691 -177374662 - L2 LINE L2 -3 3310 2402 647 325 6 18 chr1 65289713 65289882 -177374471 + MER91A DNA MER1_type 2 168 -28 350 325 135 12 chr1 65290216 65290379 -177373974 - MIR3 SINE MIR -11 197 15 609 271 117 5 chr1 65290426 65290614 -177373739 + MIR SINE MIR 20 228 -34 858 221 0 0 chr1 65291579 65291737 -177372616 + MER96 DNA MER1_type? 18 175 0 558 279 197 21 chr1 65291790 65292023 -177372330 - MLT1J LTR MaLR -3 508 235 26 30 0 0 chr1 65292047 65292080 -177372273 + AT_rich Low_complexity Low_complexity 1 33 0 346 234 55 55 chr1 65292649 65292777 -177371576 + LTR67 LTR ERVL 428 555 -2 360 328 0 49 chr1 65293173 65293295 -177371058 + L2 LINE L2 3196 3311 -2 215 293 111 20 chr1 65293853 65293952 -177370401 - MIR SINE MIR -4 258 151 830 244 143 58 chr1 65294006 65294383 -177369970 + MLT1J LTR MaLR 99 507 -4 556 313 159 26 chr1 65294442 65294781 -177369572 + MLT1J2 LTR MaLR 67 450 0 270 281 24 12 chr1 65294781 65294863 -177369490 - MIR SINE MIR -117 145 63 230 326 193 0 chr1 65295585 65295720 -177368633 - MIR SINE MIR -24 238 78 272 360 62 12 chr1 65297193 65297354 -177366999 + MIR SINE MIR 32 200 -62 3962 13 2 0 chr1 65297388 65297925 -177366428 - L1PA3 LINE L1 -452 5703 5166 3959 24 4 0 chr1 65297925 65298381 -177365972 + L1PA3 LINE L1 5697 6155 0 2245 104 0 0 chr1 65298613 65298921 -177365432 - AluSc SINE Alu -1 308 1 568 278 94 45 chr1 65299134 65299357 -177364996 + MLT1K LTR MaLR 26 259 -329 429 304 112 14 chr1 65299420 65299634 -177364719 + MLT1K LTR MaLR 354 588 0 504 218 54 40 chr1 65299635 65299818 -177364535 - MIR SINE MIR -26 236 45 255 61 0 0 chr1 65300537 65300570 -177363783 + (TG)n Simple_repeat Simple_repeat 2 34 0 465 254 91 55 chr1 65300634 65300854 -177363499 - MIR SINE MIR -26 236 9 279 302 63 8 chr1 65300938 65301064 -177363289 + MIR SINE MIR 63 195 -67 202 268 0 0 chr1 65301230 65301271 -177363082 + L2 LINE L2 3214 3254 -18 689 233 59 132 chr1 65301375 65301731 -177362622 - MLT1I LTR MaLR -6 403 74 588 299 89 50 chr1 65301747 65302105 -177362248 + MLT1L LTR MaLR 156 527 -88 231 345 92 59 chr1 65302977 65303281 -177361072 + L2 LINE L2 2838 3151 -121 1984 130 10 7 chr1 65303300 65303608 -177360745 - AluSx SINE Alu -3 309 1 277 338 135 46 chr1 65304436 65304806 -177359547 + L2 LINE L2 2826 3228 -44 407 352 95 57 chr1 65305552 65305901 -177358452 - L2 LINE L2 -1 3271 2910 205 171 0 0 chr1 65307323 65307358 -177356995 + GA-rich Low_complexity Low_complexity 2 36 0 208 224 0 60 chr1 65311017 65311084 -177353269 + C-rich Low_complexity Low_complexity 1 63 0 206 326 84 0 chr1 65312148 65312243 -177352110 + MIR SINE MIR 36 138 -70 228 168 63 137 chr1 65312731 65312826 -177351527 - L2 LINE L2 -23 3249 3162 620 245 126 16 chr1 65312910 65313140 -177351213 - MIR SINE MIR 0 262 15 209 345 55 35 chr1 65313387 65313532 -177350821 + L2 LINE L2 2702 2849 -465 993 249 105 35 chr1 65313539 65313912 -177350441 - MLT1I LTR MaLR -4 405 7 1936 85 4 0 chr1 65314460 65314719 -177349634 - AluSp SINE Alu -14 299 40 1361 222 59 45 chr1 65315215 65315589 -177348764 - MLT1I LTR MaLR 0 409 31 416 310 46 61 chr1 65315606 65315690 -177348663 - MLT1I LTR MaLR -18 391 307 2363 133 23 0 chr1 65315690 65316044 -177348309 + THE1B LTR MaLR 3 364 0 416 310 46 61 chr1 65316044 65316156 -177348197 - MLT1I LTR MaLR -102 307 198 476 248 64 111 chr1 65316373 65316671 -177347682 + L2 LINE L2 2985 3268 -4 375 230 60 0 chr1 65316865 65316965 -177347388 - MLT1I LTR MaLR 0 409 304 1007 240 26 39 chr1 65316989 65317297 -177347056 - MLT1I LTR MaLR -44 365 62 2506 138 18 28 chr1 65317696 65318132 -177346221 - MSTB1 LTR MaLR 0 432 1 274 347 40 16 chr1 65318511 65318635 -177345718 + L2 LINE L2 3134 3260 -12 273 284 164 35 chr1 65318768 65318884 -177345469 - L3 LINE CR1 -9 1568 1438 344 327 135 36 chr1 65318891 65319276 -177345077 + L3 LINE CR1 1005 1427 -150 586 269 72 16 chr1 65319652 65319845 -177344508 + MLT1J1 LTR MaLR 1 204 -242 462 283 57 28 chr1 65319842 65320019 -177344334 + MLT1J2 LTR MaLR 249 430 -20 * 273 343 88 56 chr1 65320334 65320742 -177343611 - L2 LINE L2 0 3272 2852 291 261 127 24 chr1 65320813 65320978 -177343375 + L1ME4a LINE L1 5938 6119 -2 839 209 126 41 chr1 65321566 65321860 -177342493 - MLT1I LTR MaLR -18 391 96 225 193 11 11 chr1 65321898 65321953 -177342400 + MIR SINE MIR 96 149 -113 257 301 20 65 chr1 65321956 65322109 -177342244 + L1ME4a LINE L1 5774 5919 -202 279 206 0 98 chr1 65322168 65322260 -177342093 - MIR SINE MIR 0 262 180 361 282 8 48 chr1 65322765 65322889 -177341464 - MLT1H LTR MaLR -329 220 102 180 343 86 29 chr1 65323446 65323586 -177340767 - MIR3 SINE MIR -57 151 4 473 241 54 27 chr1 65323927 65324151 -177340202 + MER113 DNA MER1_type? 3 232 -289 313 254 65 29 chr1 65324230 65324368 -177339985 + MIR SINE MIR 26 168 -94 213 39 0 0 chr1 65324368 65324394 -177339959 + (TG)n Simple_repeat Simple_repeat 2 27 0 230 250 15 59 chr1 65324572 65324640 -177339713 - L2 LINE L2 -25 3247 3183 * 299 290 121 3 chr1 65324634 65324775 -177339578 + MIR SINE MIR 28 183 -64 2872 48 3 0 chr1 65324900 65325288 -177339065 + L1PA4 LINE L1 5803 6155 0 366 138 0 32 chr1 65326421 65326515 -177337838 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 681 188 6 11 chr1 65326526 65326702 -177337651 + CT-rich Low_complexity Low_complexity 1 175 0 203 259 0 25 chr1 65326693 65326774 -177337579 + C-rich Low_complexity Low_complexity 3 81 0 * 309 276 31 20 chr1 65326775 65326873 -177337480 - L2 LINE L2 -19 3294 3196 686 300 62 0 chr1 65326881 65327108 -177337245 + MIR SINE MIR 12 252 -10 207 214 0 0 chr1 65327375 65327417 -177336936 - L2 LINE L2 -244 3069 3028 3377 58 7 2 chr1 65327886 65328316 -177336037 - L1PA8 LINE L1 -3 6169 5738 232 227 0 0 chr1 65328772 65328816 -177335537 + MIR3 SINE MIR 149 192 -16 195 42 0 0 chr1 65329148 65329172 -177335181 + (CA)n Simple_repeat Simple_repeat 1 24 0 216 67 0 0 chr1 65329172 65329202 -177335151 + (GA)n Simple_repeat Simple_repeat 1 30 0 384 22 0 0 chr1 65329566 65329611 -177334742 + (ATG)n Simple_repeat Simple_repeat 3 47 0 516 256 54 6 chr1 65329619 65329787 -177334566 - MIR SINE MIR -84 178 3 209 33 33 0 chr1 65330807 65330837 -177333516 + (TG)n Simple_repeat Simple_repeat 2 32 0 565 200 16 16 chr1 65331034 65331159 -177333194 + MIR SINE MIR 52 176 -86 300 319 52 0 chr1 65331233 65331349 -177333004 + MIR SINE MIR 20 141 -121 862 260 115 59 chr1 65331650 65331990 -177332363 + L2 LINE L2 2583 2902 -411 504 93 0 0 chr1 65331990 65332065 -177332288 + (CA)n Simple_repeat Simple_repeat 2 76 0 862 260 115 59 chr1 65332065 65332384 -177331969 + L2 LINE L2 2902 3305 -8 389 305 61 33 chr1 65332912 65333125 -177331228 + MIR SINE MIR 40 257 -5 1489 224 47 66 chr1 65333357 65333826 -177330527 - MLT1C LTR MaLR -2 465 6 357 269 115 99 chr1 65333955 65334278 -177330075 - L2 LINE L2 0 3272 2945 342 250 0 12 chr1 65334514 65334598 -177329755 - L1ME3A LINE L1 -16 6154 6072 224 395 9 18 chr1 65334713 65334827 -177329526 + MIR SINE MIR 16 128 -80 2547 60 0 10 chr1 65335387 65335701 -177328652 + AluY SINE Alu 1 311 0 362 316 78 10 chr1 65335920 65336113 -177328240 - MIR SINE MIR -56 206 1 439 314 84 0 chr1 65336481 65336672 -177327681 - MIR SINE MIR 0 262 56 249 202 71 36 chr1 65336797 65336881 -177327472 + Charlie2 DNA MER1_type 199 285 -2577 204 169 0 138 chr1 65337499 65337564 -177326789 + MIR SINE MIR 81 136 -72 539 252 16 0 chr1 65337919 65338046 -177326307 - L2 LINE L2 -1 3312 3184 224 208 57 0 chr1 65338120 65338173 -177326180 + L2 LINE L2 3258 3313 0 273 300 179 14 chr1 65338621 65338761 -177325592 + MIR SINE MIR 20 182 -80 767 273 64 44 chr1 65339076 65339425 -177324928 - L2 LINE L2 -2 3270 2916 202 297 0 40 chr1 65339490 65339564 -177324789 - L2 LINE L2 -558 2756 2686 246 202 24 71 chr1 65340028 65340112 -177324241 + MIR SINE MIR 104 183 -79 354 224 47 28 chr1 65340186 65340293 -177324060 - MIR SINE MIR -93 169 61 298 182 218 27 chr1 65340554 65340664 -177323689 + L2 LINE L2 3138 3268 -4 318 278 134 10 chr1 65341576 65341770 -177322583 + MIR SINE MIR 31 248 -14 308 304 57 13 chr1 65342400 65342558 -177321795 - MIR SINE MIR -77 185 21 3340 154 12 7 chr1 65343505 65344070 -177320283 + L1PA16 LINE L1 5587 6154 -12 1773 174 3 13 chr1 65344070 65344381 -177319972 + AluJo SINE Alu 1 308 -4 556 243 49 0 chr1 65344410 65344554 -177319799 + MIR SINE MIR 68 218 -44 273 268 122 8 chr1 65344604 65344727 -177319626 + MIR SINE MIR 46 182 -80 787 242 62 0 chr1 65344766 65344977 -177319376 - MIR SINE MIR -21 241 18 205 184 0 0 chr1 65346051 65346089 -177318264 - L2 LINE L2 -8 3305 3268 * 335 298 176 15 chr1 65346055 65346277 -177318076 - MIR SINE MIR -6 256 4 2293 112 3 6 chr1 65347063 65347375 -177316978 - AluSq SINE Alu -2 311 1 255 132 0 0 chr1 65347480 65347518 -177316835 + L2 LINE L2 3222 3259 -13 387 0 0 0 chr1 65347519 65347562 -177316791 + (CA)n Simple_repeat Simple_repeat 2 44 0 1111 295 58 12 chr1 65347831 65348248 -177316105 - L2 LINE L2 -1 3312 2877 252 177 11 18 chr1 65349156 65349225 -177315128 + MIR SINE MIR 60 130 -78 185 267 211 22 chr1 65349817 65349907 -177314446 + MIR3 SINE MIR 50 156 -52 182 333 46 11 chr1 65350008 65350095 -177314258 + MIR SINE MIR 59 148 -114 381 323 88 31 chr1 65350301 65350527 -177313826 + MIR SINE MIR 21 259 -3 282 282 25 74 chr1 65350820 65350983 -177313370 + MIR SINE MIR 83 237 -25 186 321 18 0 chr1 65350956 65351012 -177313341 + L2 LINE L2 3215 3271 -1 * 665 207 34 34 chr1 65351135 65351314 -177313039 - MER97c DNA MER1_type? -911 179 1 202 316 123 0 chr1 65352065 65352179 -177312174 + L2 LINE L2 2910 3037 -235 33 80 0 0 chr1 65352219 65352294 -177312059 + AT_rich Low_complexity Low_complexity 1 75 0 2384 83 20 7 chr1 65352310 65352612 -177311741 - AluSg SINE Alu -4 306 1 309 231 0 0 chr1 65352683 65352748 -177311605 + MIR SINE MIR 198 262 0 213 143 122 20 chr1 65352832 65352881 -177311472 + L2 LINE L2 3155 3208 -64 285 297 33 22 chr1 65352992 65353135 -177311218 + MIR SINE MIR 21 164 -63 455 241 83 55 chr1 65354204 65354565 -177309788 + L1M4 LINE L1 2923 3293 -2853 286 371 11 0 chr1 65354654 65354743 -177309610 - MIR SINE MIR -81 127 38 2173 142 12 15 chr1 65354819 65355157 -177309196 + MER1B DNA MER1_type 1 337 0 1575 173 52 74 chr1 65355178 65355599 -177308754 - MLT1C LTR MaLR -52 415 4 297 276 99 86 chr1 65355720 65356104 -177308249 + L3 LINE CR1 1018 1406 -171 361 241 253 0 chr1 65356616 65356703 -177307650 + MER81 DNA DNA 1 109 -5 298 289 93 0 chr1 65356835 65356932 -177307421 + L2 LINE L2 3200 3305 -8 2194 145 9 3 chr1 65356933 65357278 -177307075 + MER7A DNA MER2_type 1 345 -1 327 274 62 9 chr1 65358020 65358133 -177306220 - MIR SINE MIR -108 154 36 468 248 46 0 chr1 65358607 65358716 -177305637 + MIR3 SINE MIR 43 156 -52 263 304 81 69 chr1 65358870 65359130 -177305223 - MLT1K LTR MaLR -15 573 311 355 277 68 53 chr1 65359208 65359414 -177304939 - MLT1K LTR MaLR -254 334 126 223 286 66 0 chr1 65359861 65359952 -177304401 - L2 LINE L2 -298 2974 2878 285 330 67 88 chr1 65360944 65361183 -177303170 - L2 LINE L2 -6 3266 3033 569 271 29 38 chr1 65361626 65361836 -177302517 - MIR SINE MIR -48 214 7 541 313 75 9 chr1 65362882 65363109 -177301244 + MIR SINE MIR 7 248 -14 344 277 131 40 chr1 65363127 65363477 -177300876 - L3 LINE CR1 -475 1102 721 224 275 12 0 chr1 65363695 65363775 -177300578 + MIR SINE MIR 138 218 -44 1410 210 123 40 chr1 65363781 65363916 -177300437 - LTR40b LTR ERVL -2 460 338 1366 231 30 0 chr1 65363916 65364093 -177300260 - AluJo SINE Alu -4 308 117 288 53 0 0 chr1 65364093 65364131 -177300222 + (TG)n Simple_repeat Simple_repeat 2 39 0 1366 231 30 0 chr1 65364131 65364251 -177300102 - AluJo SINE Alu -195 117 2 1410 210 123 40 chr1 65364251 65364538 -177299815 - LTR40b LTR ERVL -124 338 3 328 231 46 69 chr1 65364859 65365032 -177299321 + L2 LINE L2 2915 3083 -189 656 248 0 0 chr1 65365336 65365465 -177298888 + FLAM_A SINE Alu 5 133 0 482 239 26 58 chr1 65366032 65366187 -177298166 + MIR SINE MIR 113 262 0 402 285 76 6 chr1 65366272 65366430 -177297923 + MIR SINE MIR 79 247 -15 441 290 7 0 chr1 65367389 65367527 -177296826 + MIR3 SINE MIR 60 198 -10 351 299 132 11 chr1 65367714 65367888 -177296465 - MIR SINE MIR -20 242 48 454 266 16 8 chr1 65368702 65368830 -177295523 - L2 LINE L2 -1 3312 3184 1552 227 105 16 chr1 65368847 65369274 -177295079 - MLT1C LTR MaLR -2 465 1 224 265 20 51 chr1 65369390 65369488 -177294865 + MIR SINE MIR 101 195 -67 252 100 0 0 chr1 65369585 65369625 -177294728 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 313 317 0 0 chr1 65369625 65369729 -177294624 - L2 LINE L2 -17 3296 3193 1995 200 28 85 chr1 65369735 65370279 -177294074 + MLT2B1 LTR ERVL 1 513 -7 236 226 20 88 chr1 65370334 65370436 -177293917 - MIR SINE MIR -60 202 108 1382 118 39 0 chr1 65370555 65370758 -177293595 - AluSx SINE Alu -7 305 95 234 176 0 0 chr1 65370760 65370811 -177293542 + T-rich Low_complexity Low_complexity 1 51 0 917 65 0 0 chr1 65370812 65370920 -177293433 - AluSx SINE Alu -205 108 1 367 361 38 9 chr1 65371547 65371760 -177292593 + MIR SINE MIR 30 248 -14 1462 162 95 46 chr1 65371772 65372099 -177292254 + MER2 DNA MER2_type 1 343 -1 24 0 0 0 chr1 65372593 65372617 -177291736 + AT_rich Low_complexity Low_complexity 1 24 0 193 324 29 0 chr1 65373099 65373167 -177291186 + L2 LINE L2 3242 3311 -2 2354 100 3 0 chr1 65373558 65373859 -177290494 + AluSp SINE Alu 1 302 -11 267 234 128 11 chr1 65373922 65374016 -177290337 + MIR SINE MIR 34 138 -124 631 241 128 5 chr1 65374244 65374439 -177289914 - MIR SINE MIR -16 246 28 223 231 77 15 chr1 65375017 65375082 -177289271 - MIR SINE MIR -71 191 123 665 272 26 5 chr1 65375087 65375278 -177289075 - MIR SINE MIR -60 202 8 278 239 80 0 chr1 65375280 65375368 -177288985 - MIR SINE MIR -77 185 91 302 297 139 7 chr1 65376378 65376531 -177287822 - MIR SINE MIR -58 204 34 201 213 0 0 chr1 65376831 65376878 -177287475 + CT-rich Low_complexity Low_complexity 2 48 0 552 276 16 42 chr1 65376911 65377103 -177287250 - MIR SINE MIR -41 221 35 343 291 10 48 chr1 65377219 65377378 -177286975 - MIR SINE MIR -68 140 34 279 0 0 0 chr1 65377492 65377523 -177286830 + (TG)n Simple_repeat Simple_repeat 2 32 0 251 298 71 24 chr1 65378315 65378483 -177285870 + L2 LINE L2 3017 3192 -121 192 239 0 0 chr1 65378512 65378558 -177285795 + L2 LINE L2 3263 3308 -5 867 235 107 13 chr1 65378617 65378851 -177285502 - MIR SINE MIR 0 262 7 204 227 0 45 chr1 65379089 65379155 -177285198 + GA-rich Low_complexity Low_complexity 4 66 0 265 263 113 38 chr1 65379320 65379453 -177284900 - MIR SINE MIR -70 192 50 299 286 0 0 chr1 65381044 65381121 -177283232 - MIR SINE MIR -63 145 72 189 369 8 31 chr1 65381134 65381264 -177283089 + L2 LINE L2 3187 3313 0 334 282 141 7 chr1 65381795 65381944 -177282409 - MIR SINE MIR -74 188 20 366 309 0 0 chr1 65382718 65382812 -177281541 + MIR SINE MIR 29 122 -140 197 370 0 0 chr1 65433209 65433263 -177231090 + L3 LINE CR1 1410 1463 -114 470 287 57 0 chr1 65433344 65433501 -177230852 + MIR SINE MIR 96 261 -1 456 263 30 66 chr1 65433625 65433823 -177230530 - MIR3 SINE MIR -1 207 17 914 292 5 5 chr1 65433912 65434128 -177230225 - MIR SINE MIR -45 217 2 478 224 60 0 chr1 65434468 65434584 -177229769 + MIR SINE MIR 82 204 -58 579 252 21 70 chr1 65434718 65434960 -177229393 - MIR SINE MIR -1 261 32 225 321 18 0 chr1 65436066 65436122 -177228231 + L3 LINE CR1 1418 1474 -103 512 220 92 43 chr1 65436457 65436598 -177227755 - L2 LINE L2 -5 3308 3161 1726 121 3 90 chr1 65436693 65437015 -177227338 + AluSx SINE Alu 1 294 -18 773 276 117 0 chr1 65437272 65437486 -177226867 + MIR SINE MIR 8 246 -16 250 321 121 107 chr1 65437489 65437844 -177226509 + L2 LINE L2 2913 3272 0 191 196 98 0 chr1 65437846 65437897 -177226456 - MIR SINE MIR -71 137 82 * 297 276 128 45 chr1 65437894 65438050 -177226303 + MIR SINE MIR 50 218 -44 * 622 291 143 18 chr1 65438029 65438252 -177226101 + MIR SINE MIR 6 256 -6 959 251 74 17 chr1 65439439 65439738 -177224615 - L1ME1 LINE L1 -5 6161 5846 339 284 129 12 chr1 65439871 65440046 -177224307 + MIR SINE MIR 34 211 -22 369 323 128 22 chr1 65440739 65440965 -177223388 - MIR SINE MIR -2 260 11 1923 132 0 14 chr1 65441022 65441318 -177223035 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr1 65441318 65441348 -177223005 + AT_rich Low_complexity Low_complexity 1 30 0 365 241 36 51 chr1 65441384 65441521 -177222832 - MER103 DNA DNA -1 165 31 244 274 0 0 chr1 65441828 65441890 -177222463 + MIR SINE MIR 83 144 -64 676 300 43 8 chr1 65442024 65442249 -177222104 - MIR SINE MIR -1 261 35 214 98 39 0 chr1 65442337 65442388 -177221965 + T-rich Low_complexity Low_complexity 3 55 0 345 228 44 94 chr1 65442570 65442662 -177221691 + L2 LINE L2 2617 2697 -617 2254 104 0 0 chr1 65442662 65442971 -177221382 + AluSc SINE Alu 1 309 0 345 228 44 94 chr1 65442971 65443058 -177221295 + L2 LINE L2 2697 2787 -527 809 73 23 23 chr1 65443125 65443386 -177220967 + (TCTA)n Simple_repeat Simple_repeat 1 261 0 1792 184 9 26 chr1 65443386 65443733 -177220620 - MLT2C1 LTR ERVL -53 344 4 193 224 321 50 chr1 65443750 65444027 -177220326 + L2 LINE L2 2810 3161 -111 548 255 20 39 chr1 65444154 65444307 -177220046 + L2 LINE L2 3164 3313 0 307 268 24 101 chr1 65444325 65444410 -177219943 - L2 LINE L2 -4 3309 3242 3054 77 19 12 chr1 65444410 65444837 -177219516 + L1PA11 LINE L1 5745 6174 0 307 268 24 101 chr1 65444837 65444919 -177219434 - L2 LINE L2 -71 3242 3155 216 220 0 17 chr1 65444930 65444989 -177219364 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 283 169 28 0 chr1 65444996 65445067 -177219286 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 224 335 65 87 chr1 65445118 65445303 -177219050 + MIR SINE MIR 26 206 -56 642 309 0 64 chr1 65445432 65445681 -177218672 + MIR SINE MIR 28 260 -2 831 199 15 80 chr1 65446865 65447066 -177217287 + MER5A DNA MER1_type 1 188 -1 679 281 47 20 chr1 65447066 65447319 -177217034 + MIR SINE MIR 3 262 0 224 354 43 18 chr1 65447654 65447818 -177216535 + L2 LINE L2 734 901 -2413 380 180 60 50 chr1 65447948 65448048 -177216305 + MLT1I LTR MaLR 304 404 -5 286 293 38 19 chr1 65448050 65448156 -177216197 + MIR SINE MIR 155 262 0 186 43 0 0 chr1 65448461 65448484 -177215869 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 510 191 43 99 chr1 65449373 65449535 -177214818 - ORSL DNA AcHobo -122 153 1 229 216 0 0 chr1 65449536 65449604 -177214749 + MIR SINE MIR 101 167 -66 725 221 89 0 chr1 65449922 65450080 -177214273 - MER45A DNA AcHobo -6 172 1 610 248 0 0 chr1 65450171 65450304 -177214049 - MIR SINE MIR -21 241 109 224 286 153 0 chr1 65450744 65450842 -177213511 + L2 LINE L2 2696 2808 -506 458 353 111 34 chr1 65450889 65451240 -177213113 + L2 LINE L2 2890 3267 -5 1038 278 144 39 chr1 65451307 65451897 -177212456 + HAL1 LINE L1 1833 2484 -23 379 241 293 0 chr1 65452600 65452733 -177211620 - MIR SINE MIR -3 259 88 2284 133 109 13 chr1 65452790 65453241 -177211112 + L1MB3 LINE L1 5686 6179 -4 216 0 0 0 chr1 65453241 65453265 -177211088 + (T)n Simple_repeat Simple_repeat 1 24 0 330 107 0 0 chr1 65453371 65453427 -177210926 + L1MB4 LINE L1 6124 6179 -1 2001 112 14 0 chr1 65453435 65453609 -177210744 - AluY SINE Alu -13 298 117 372 22 0 0 chr1 65453609 65453654 -177210699 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2001 112 14 0 chr1 65453654 65453773 -177210580 - AluY SINE Alu -194 117 1 947 166 17 38 chr1 65453797 65454032 -177210321 + L1MB4 LINE L1 5951 6180 0 1228 196 80 42 chr1 65454380 65454692 -177209661 + MER2 DNA MER2_type 22 345 0 452 262 146 24 chr1 65454694 65454858 -177209495 - MIR SINE MIR -42 220 37 597 306 26 39 chr1 65455108 65455340 -177209013 + MIR SINE MIR 10 238 -24 286 305 48 9 chr1 65455383 65455488 -177208865 + MIR SINE MIR 85 193 -69 221 143 0 0 chr1 65455731 65455766 -177208587 + L2 LINE L2 3267 3301 -12 442 321 118 38 chr1 65456217 65456479 -177207874 - L2 LINE L2 -5 3267 2985 239 302 19 28 chr1 65456546 65456652 -177207701 + L2 LINE L2 3160 3264 -49 274 289 36 0 chr1 65456670 65456753 -177207600 - L2 LINE L2 -290 2982 2897 762 180 7 14 chr1 65457452 65457591 -177206762 - FLAM_C SINE Alu 0 143 6 234 255 0 0 chr1 65457902 65457949 -177206404 + polypyrimidine Low_complexity Low_complexity 3 49 0 2026 119 0 0 chr1 65458173 65458470 -177205883 + AluSc SINE Alu 5 301 0 2186 123 42 0 chr1 65458505 65458837 -177205516 - MER7A DNA MER2_type -1 345 2 182 297 78 47 chr1 65458875 65459003 -177205350 - MIR3 SINE MIR -23 185 54 496 237 158 40 chr1 65459707 65459859 -177204494 - MER5A DNA MER1_type -1 188 8 340 297 177 5 chr1 65460008 65460200 -177204153 + MIR SINE MIR 7 231 -31 442 346 94 4 chr1 65460220 65460454 -177203899 - MIR SINE MIR 0 262 8 201 233 17 33 chr1 65460572 65460632 -177203721 + MIR SINE MIR 58 116 -92 706 264 51 45 chr1 65461182 65461427 -177202926 + MIR SINE MIR 1 252 -10 207 361 14 0 chr1 65461495 65461567 -177202786 - L2 LINE L2 -14 3258 3186 292 310 76 53 chr1 65461672 65461843 -177202510 - MIR SINE MIR -12 250 76 327 278 52 35 chr1 65461943 65462058 -177202295 - MIR SINE MIR -73 189 73 287 284 0 42 chr1 65462510 65462605 -177201748 + MIR SINE MIR 63 153 -109 496 202 65 24 chr1 65462606 65462730 -177201623 + L2 LINE L2 3185 3313 0 335 300 70 62 chr1 65462865 65463108 -177201245 - L2 LINE L2 0 3272 3028 1528 268 56 23 chr1 65463951 65464507 -177199846 - L2 LINE L2 -383 2931 2358 1671 220 53 8 chr1 65464594 65465067 -177199286 + L1M4 LINE L1 2390 2883 -3263 30 0 0 0 chr1 65465067 65465097 -177199256 + AT_rich Low_complexity Low_complexity 1 30 0 6052 167 10 18 chr1 65465097 65465347 -177199006 - L1PA16 LINE L1 -9 6157 5907 2069 169 19 11 chr1 65465347 65465719 -177198634 - THE1C LTR MaLR 0 375 1 6052 167 10 18 chr1 65465719 65467524 -177196829 - L1PA16 LINE L1 -259 5907 4123 2313 254 92 41 chr1 65467537 65468344 -177196009 - L2 LINE L2 -962 2352 1505 686 263 36 10 chr1 65468405 65468599 -177195754 - MIR SINE MIR -1 261 63 325 237 113 10 chr1 65469005 65469102 -177195251 + MIR3 SINE MIR 61 167 -41 394 329 6 63 chr1 65469126 65469284 -177195069 - L2 LINE L2 -10 3262 3114 1906 99 4 4 chr1 65469568 65469830 -177194523 - AluSx SINE Alu -49 263 2 21 0 0 0 chr1 65469853 65469874 -177194479 + AT_rich Low_complexity Low_complexity 1 21 0 678 284 61 9 chr1 65469965 65470194 -177194159 - MIR SINE MIR -8 254 14 238 278 28 28 chr1 65470217 65470289 -177194064 - L2 LINE L2 -607 2707 2636 1929 139 3 0 chr1 65470329 65470630 -177193723 - AluSx SINE Alu -10 302 1 232 222 51 26 chr1 65470644 65470761 -177193592 - L1M4 LINE L1 -873 5273 5154 363 301 66 7 chr1 65471428 65471564 -177192789 + MIR SINE MIR 71 214 -48 188 139 0 28 chr1 65471666 65471702 -177192651 + L2 LINE L2 3267 3301 -12 4088 168 7 20 chr1 65471703 65472419 -177191934 + L1MB3 LINE L1 5428 6134 -49 279 306 187 21 chr1 65472581 65472819 -177191534 - L2 LINE L2 -302 3011 2741 467 241 129 9 chr1 65473407 65473523 -177190830 - L2 LINE L2 0 3272 3143 594 272 35 50 chr1 65473598 65473800 -177190553 - MIR SINE MIR -5 257 59 1131 253 84 54 chr1 65474261 65474703 -177189650 + LTR33 LTR ERVL 5 459 -62 500 254 45 142 chr1 65474776 65475044 -177189309 - MIR SINE MIR -1 261 20 21 0 0 0 chr1 65475398 65475419 -177188934 + AT_rich Low_complexity Low_complexity 1 21 0 457 273 126 22 chr1 65475880 65476063 -177188290 - MIR SINE MIR -29 233 32 181 214 71 0 chr1 65476086 65476128 -177188225 - MIR SINE MIR -60 148 104 337 222 86 0 chr1 65476540 65476621 -177187732 + MIR SINE MIR 44 131 -131 210 293 61 40 chr1 65476858 65476957 -177187396 - MIR3 SINE MIR -11 197 97 2172 99 3 0 chr1 65477461 65477755 -177186598 - AluSp SINE Alu -16 297 3 388 231 143 71 chr1 65478014 65478196 -177186157 + MIR SINE MIR 20 214 -48 1522 189 35 51 chr1 65478734 65479279 -177185074 + MLT1D LTR MaLR 1 500 -5 452 270 0 0 chr1 65479381 65479481 -177184872 + MIR SINE MIR 46 145 -63 563 197 109 38 chr1 65479952 65480135 -177184218 + MIR SINE MIR 64 259 -3 496 286 82 53 chr1 65480262 65480507 -177183846 + MIR SINE MIR 1 252 -10 502 355 86 20 chr1 65482006 65482493 -177181860 + L2 LINE L2 2303 2821 -493 369 269 97 34 chr1 65482548 65482631 -177181722 + L2 LINE L2 2897 2973 -299 216 0 0 0 chr1 65482631 65482655 -177181698 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 369 269 97 34 chr1 65482655 65482746 -177181607 + L2 LINE L2 2973 3082 -190 186 211 39 39 chr1 65483438 65483490 -177180863 - L2 LINE L2 0 3313 3262 256 300 0 0 chr1 65483666 65483726 -177180627 + L2 LINE L2 3252 3311 -2 348 24 0 0 chr1 65483954 65483995 -177180358 + (TC)n Simple_repeat Simple_repeat 1 41 0 1071 121 0 0 chr1 65484025 65484209 -177180144 + AluSg/x SINE Alu 137 320 0 221 258 72 41 chr1 65484277 65484374 -177179979 + L2 LINE L2 3168 3267 -5 244 316 105 0 chr1 65484773 65484887 -177179466 + MIR3 SINE MIR 60 185 -23 1520 212 56 39 chr1 65485470 65485913 -177178440 + MLT1D LTR MaLR 33 504 -1 197 367 51 25 chr1 65485915 65486073 -177178280 - L2 LINE L2 -79 3193 3032 185 333 105 25 chr1 65486273 65486435 -177177918 - L2 LINE L2 -385 2929 2755 512 324 88 9 chr1 65486666 65486882 -177177471 + MIR SINE MIR 13 245 -17 1172 274 43 14 chr1 65486966 65487423 -177176930 + LTR33 LTR ERVL 21 521 0 192 307 173 0 chr1 65488067 65488142 -177176211 + L2 LINE L2 3142 3229 -43 1740 184 0 13 chr1 65488250 65488560 -177175793 - AluJo SINE Alu -6 306 1 1505 161 34 28 chr1 65489069 65489360 -177174993 + AluJb SINE Alu 1 293 -19 687 297 25 83 chr1 65489387 65489747 -177174606 - L2 LINE L2 -2 3311 2973 23118 53 1 2 chr1 65490889 65493707 -177170646 - L1P LINE L1 -3332 2814 1 269 283 113 91 chr1 65493875 65494204 -177170149 + L2 LINE L2 2937 3272 0 715 208 13 113 chr1 65494363 65494594 -177169759 - MIR SINE MIR -38 224 17 460 243 71 7 chr1 65494614 65494754 -177169599 - MIR SINE MIR -11 251 103 346 353 59 0 chr1 65495083 65495219 -177169134 + MIR SINE MIR 70 213 -49 3210 134 26 20 chr1 65495222 65495720 -177168633 - MER1A DNA MER1_type 0 529 29 317 213 16 0 chr1 65496080 65496141 -177168212 + L2 LINE L2 3249 3310 -3 643 214 24 0 chr1 65496435 65496561 -177167792 - L2 LINE L2 -1 3312 3184 236 259 17 0 chr1 65496800 65496858 -177167495 + GA-rich Low_complexity Low_complexity 1 59 0 317 297 123 0 chr1 65497219 65497374 -177166979 - MIR SINE MIR -70 192 19 334 215 15 0 chr1 65497400 65497465 -177166888 - MER20 DNA MER1_type 0 219 154 2709 88 6 0 chr1 65497465 65497818 -177166535 - THE1A LTR MaLR 0 355 1 11661 108 5 0 chr1 65497818 65499390 -177164963 - THE1A-int LTR MaLR 0 1580 1 1630 80 5 5 chr1 65499390 65499603 -177164750 - THE1A LTR MaLR 0 355 143 897 168 0 0 chr1 65499603 65499746 -177164607 - THE1-int LTR MaLR -1020 560 418 1130 73 0 0 chr1 65499757 65499894 -177164459 - THE1A LTR MaLR -218 137 1 634 216 64 0 chr1 65499895 65500020 -177164333 - MER20 DNA MER1_type -62 157 25 304 227 67 0 chr1 65500050 65500125 -177164228 + MIR3 SINE MIR 91 170 -38 226 250 98 45 chr1 65500259 65500275 -177164078 + Charlie7 DNA MER1_type 2472 2486 -126 1524 183 32 3 chr1 65500275 65500560 -177163793 - AluJb SINE Alu -19 293 1 226 250 98 45 chr1 65500560 65500675 -177163678 + Charlie7 DNA MER1_type 2486 2610 -2 284 327 10 0 chr1 65500768 65500869 -177163484 + MIR SINE MIR 102 203 -59 879 87 0 0 chr1 65501058 65501173 -177163180 + AluSc SINE Alu 1 115 -194 25384 29 0 1 chr1 65501173 65504959 -177159394 + L1PA5 LINE L1 2364 6154 0 452 351 61 55 chr1 65505357 65505842 -177158511 - L2 LINE L2 -20 3252 2766 608 297 102 0 chr1 65505874 65506110 -177158243 + MIR SINE MIR 1 260 -2 946 310 36 45 chr1 65506555 65507048 -177157305 + LTR33 LTR ERVL 32 520 -1 264 371 18 41 chr1 65507245 65507466 -177156887 - L2 LINE L2 -510 2804 2589 277 204 229 0 chr1 65507857 65507977 -177156376 - MIR SINE MIR -63 145 43 253 270 0 16 chr1 65508224 65508287 -177156066 + L2 LINE L2 3014 3075 -197 262 204 23 0 chr1 65508402 65508490 -177155863 - L1MC4 LINE L1 -1339 6703 6614 423 340 49 15 chr1 65508542 65508745 -177155608 + L3 LINE CR1 1227 1436 -141 442 269 148 0 chr1 65508862 65509011 -177155342 - MIR SINE MIR 0 262 92 195 42 0 0 chr1 65509478 65509502 -177154851 + (A)n Simple_repeat Simple_repeat 1 24 0 256 271 0 0 chr1 65509815 65509874 -177154479 - L2 LINE L2 -10 3262 3204 3205 79 14 9 chr1 65509933 65510364 -177153989 + L1PA10 LINE L1 5734 6166 -2 298 208 52 13 chr1 65510845 65510922 -177153431 - MIR SINE MIR -84 124 45 28 61 0 0 chr1 65511146 65511195 -177153158 + AT_rich Low_complexity Low_complexity 1 49 0 299 141 81 111 chr1 65511374 65511473 -177152880 - MLT1H LTR MaLR 0 549 454 1386 188 20 24 chr1 65512530 65512822 -177151531 + AluJo SINE Alu 3 293 -19 279 281 124 41 chr1 65513739 65513860 -177150493 - L2 LINE L2 -2 3270 3140 204 317 0 0 chr1 65514113 65514173 -177150180 + L2 LINE L2 3254 3313 0 * 437 337 54 56 chr1 65514169 65514406 -177149947 + MIR SINE MIR 7 260 -2 448 353 47 40 chr1 65514415 65514690 -177149663 - L2 LINE L2 -6 3266 2990 203 308 0 66 chr1 65514856 65514947 -177149406 - MIR SINE MIR -71 191 107 423 260 85 124 chr1 65515034 65515422 -177148931 + L2 LINE L2 2900 3272 0 214 328 129 0 chr1 65515495 65515611 -177148742 - L2 LINE L2 -40 3232 3102 194 305 17 0 chr1 65516028 65516087 -177148266 - L3 LINE CR1 -1099 478 419 348 64 0 0 chr1 65516089 65516136 -177148217 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 296 272 88 14 chr1 65516246 65516393 -177147960 - L1ME4a LINE L1 -4 6117 5960 463 284 67 39 chr1 65516452 65516660 -177147693 - L1ME4a LINE L1 -151 5970 5757 396 222 114 52 chr1 65517263 65517442 -177146911 + MIR3 SINE MIR 8 198 -64 272 311 159 19 chr1 65517486 65517801 -177146552 - L2 LINE L2 -58 3255 2897 307 302 124 70 chr1 65517813 65517891 -177146462 - L2 LINE L2 -33 3280 3208 2377 74 0 0 chr1 65517891 65518202 -177146151 + AluY SINE Alu 1 311 0 307 302 124 70 chr1 65518202 65518381 -177145972 - L2 LINE L2 -105 3208 3009 978 176 27 32 chr1 65518616 65518711 -177145642 - MER5A DNA MER1_type -2 187 92 2015 135 58 25 chr1 65518711 65519074 -177145279 - THE1C LTR MaLR 0 375 1 978 176 27 32 chr1 65519074 65519166 -177145187 - MER5A DNA MER1_type -97 92 1 1454 178 181 3 chr1 65519440 65519749 -177144604 + MLT1A1 LTR MaLR 1 364 -1 450 278 67 24 chr1 65520328 65520537 -177143816 + L2 LINE L2 2586 2803 -511 325 260 16 71 chr1 65520849 65520976 -177143377 + L2 LINE L2 2928 3047 -225 189 240 256 8 chr1 65521084 65521213 -177143140 + L2 LINE L2 3153 3313 0 2016 169 19 35 chr1 65521632 65522000 -177142353 - MLT1A1 LTR MaLR 0 365 4 286 247 37 0 chr1 65522060 65522141 -177142212 - MER96 DNA MER1_type? -1 174 91 258 340 20 10 chr1 65522153 65522253 -177142100 + MIR3 SINE MIR 54 154 -54 227 186 29 14 chr1 65522993 65523063 -177141290 + (TA)n Simple_repeat Simple_repeat 2 72 0 266 308 22 0 chr1 65523080 65523171 -177141182 - L3 LINE CR1 -279 1298 1206 1846 99 0 12 chr1 65523185 65523428 -177140925 + AluSg SINE Alu 62 301 -9 1938 139 4 0 chr1 65523448 65523721 -177140632 + AluSx SINE Alu 1 274 -38 329 317 194 17 chr1 65524566 65524859 -177139494 + L2 LINE L2 2928 3272 0 426 248 28 0 chr1 65525249 65525358 -177138995 - MIR SINE MIR -93 169 58 801 290 63 24 chr1 65525525 65525908 -177138445 + L2 LINE L2 2855 3252 -61 442 253 123 0 chr1 65527034 65527180 -177137173 - MIR SINE MIR -36 226 63 192 274 48 48 chr1 65527380 65527464 -177136889 - MIR SINE MIR -107 101 18 2232 132 16 50 chr1 65527920 65528298 -177136055 - MLT1A1 LTR MaLR 0 365 1 221 239 130 11 chr1 65528394 65528486 -177135867 + MIR SINE MIR 146 248 -14 345 62 0 0 chr1 65528491 65528539 -177135814 + (TG)n Simple_repeat Simple_repeat 2 49 0 218 243 81 36 chr1 65528565 65528676 -177135677 - MIR SINE MIR -70 138 23 328 265 87 56 chr1 65529340 65529536 -177134817 + L2 LINE L2 2992 3193 -120 815 266 19 5 chr1 65529556 65529770 -177134583 - MIR SINE MIR -44 218 2 521 276 22 0 chr1 65529770 65529894 -177134459 + L2 LINE L2 3187 3313 0 304 260 16 107 chr1 65530007 65530238 -177134115 + MIR SINE MIR 5 222 -40 313 312 186 25 chr1 65531015 65531294 -177133059 + L2 LINE L2 2934 3257 -15 217 269 201 22 chr1 65531396 65531530 -177132823 - MIR3 SINE MIR -27 181 24 269 310 30 0 chr1 65532579 65532679 -177131674 - MIR SINE MIR -43 219 117 886 261 60 0 chr1 65532975 65533193 -177131160 + MER69 DNA AcHobo 17 247 -979 292 125 143 0 chr1 65533188 65533244 -177131109 + MER69 DNA AcHobo 2435 2498 -28 * 271 167 0 0 chr1 65533306 65533348 -177131005 + AluSx SINE Alu 2 43 -260 1846 147 0 0 chr1 65533376 65533827 -177130526 + AluSx SINE Alu 40 312 0 1740 115 25 0 chr1 65534612 65534856 -177129497 - L1PA10 LINE L1 -12 6156 5907 250 289 12 0 chr1 65535126 65535209 -177129144 - L2 LINE L2 -226 3046 2963 858 249 108 9 chr1 65535554 65535896 -177128457 + L1ME4a LINE L1 5551 5926 -195 800 232 72 21 chr1 65535913 65536150 -177128203 - MIR SINE MIR -11 251 3 367 338 98 21 chr1 65536398 65536685 -177127668 - L2 LINE L2 0 3313 3005 357 24 0 0 chr1 65536697 65536739 -177127614 + (CA)n Simple_repeat Simple_repeat 2 43 0 472 232 18 0 chr1 65536751 65536863 -177127490 + L1MC4 LINE L1 7929 8042 0 2023 60 94 0 chr1 65537123 65537388 -177126965 - AluY SINE Alu -21 290 1 306 314 9 0 chr1 65537428 65537533 -177126820 - MIR SINE MIR -67 141 36 33 0 0 0 chr1 65537812 65537845 -177126508 + AT_rich Low_complexity Low_complexity 1 33 0 214 250 16 16 chr1 65539025 65539089 -177125264 - MIR SINE MIR -90 172 109 2212 154 63 0 chr1 65539355 65539718 -177124635 + MLT1B LTR MaLR 5 390 0 351 261 65 0 chr1 65539744 65539836 -177124517 - LTR33 LTR ERVL -319 202 105 362 256 60 51 chr1 65539890 65540007 -177124346 - L2 LINE L2 -1 3271 3154 259 219 140 61 chr1 65540414 65540528 -177123825 + MIR SINE MIR 13 135 -127 393 254 25 41 chr1 65541253 65541375 -177122978 + MER94 DNA DNA 2 121 -13 341 351 107 13 chr1 65541490 65541798 -177122555 + L2 LINE L2 2914 3250 -22 268 298 185 6 chr1 65541956 65542134 -177122219 - MARNA DNA Mariner -102 484 275 199 224 0 20 chr1 65542138 65542187 -177122166 + L2 LINE L2 3220 3267 -5 308 343 40 34 chr1 65542329 65542504 -177121849 - MIR SINE MIR -6 256 81 385 254 18 26 chr1 65542609 65542723 -177121630 - MARNA DNA Mariner -471 115 3 1426 301 81 57 chr1 65542828 65544008 -177120345 - HERV16 LTR ERVL -3788 1208 1 556 279 141 52 chr1 65544008 65544428 -177119925 - LTR16A1 LTR ERVL 0 457 1 281 89 22 0 chr1 65544429 65544474 -177119879 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 248 369 0 54 chr1 65544587 65544717 -177119636 - MIR3 SINE MIR -28 180 58 923 269 75 32 chr1 65544742 65545185 -177119168 - MLT1J LTR MaLR -49 462 1 222 306 153 9 chr1 65545267 65545378 -177118975 + MIR SINE MIR 97 223 -39 475 323 68 48 chr1 65545840 65546177 -177118176 - L2 LINE L2 -38 3234 2891 440 246 16 16 chr1 65546654 65546776 -177117577 - MIR SINE MIR -61 147 26 2392 61 0 42 chr1 65546797 65547107 -177117246 + AluY SINE Alu 1 297 -14 207 274 24 36 chr1 65547403 65547487 -177116866 - MIR SINE MIR -55 153 71 530 293 0 0 chr1 65547790 65547930 -177116423 - MIR3 SINE MIR -29 179 40 473 278 84 21 chr1 65547954 65548145 -177116208 + MIR SINE MIR 33 235 -27 218 318 114 50 chr1 65548280 65548717 -177115636 - L2 LINE L2 -396 2918 2454 718 278 92 43 chr1 65548859 65549229 -177115124 + L1ME LINE L1 5292 5676 -494 205 363 0 0 chr1 65549926 65550006 -177114347 - MIR SINE MIR -119 143 64 340 281 0 0 chr1 65550445 65550527 -177113826 - L2 LINE L2 -1 3312 3231 327 212 15 0 chr1 65550528 65550594 -177113759 - L2 LINE L2 -4 3268 3202 745 167 70 121 chr1 65550734 65550991 -177113362 + MER33 DNA MER1_type 1 244 -80 284 274 39 10 chr1 65551013 65551115 -177113238 - MIR SINE MIR -85 177 73 886 164 6 51 chr1 65551415 65551592 -177112761 - FRAM SINE Alu -4 172 4 1062 220 89 52 chr1 65551596 65551887 -177112466 + MLT1J LTR MaLR 59 360 -151 10605 100 36 5 chr1 65552156 65553659 -177110694 + Tigger1 DNA MER2_type 1 1550 -868 411 327 45 9 chr1 65553920 65554143 -177110210 + L2 LINE L2 2730 2960 -354 497 260 32 0 chr1 65554681 65554804 -177109549 - MER94 DNA DNA -7 127 1 2184 123 10 3 chr1 65555345 65555647 -177108706 - AluSx SINE Alu -8 304 1 189 336 73 36 chr1 65555945 65556055 -177108298 - MIR SINE MIR -133 129 16 467 296 56 0 chr1 65556247 65556426 -177107927 + MIR SINE MIR 73 261 -1 240 255 75 43 chr1 65557102 65557196 -177107157 + MIR SINE MIR 23 119 -143 322 169 31 0 chr1 65557380 65557445 -177106908 - L2 LINE L2 -4 3268 3202 732 255 0 6 chr1 65557523 65557722 -177106631 - MIR SINE MIR 0 262 66 1758 169 0 43 chr1 65558044 65558369 -177105984 - AluJo SINE Alu -1 311 1 264 59 0 0 chr1 65558794 65558828 -177105525 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 293 261 108 27 chr1 65559007 65559118 -177105235 + MIR SINE MIR 20 139 -69 343 313 86 0 chr1 65559601 65559764 -177104589 + MIR SINE MIR 80 256 -6 536 338 5 14 chr1 65559790 65559897 -177104456 - MIR SINE MIR 0 262 156 2735 137 5 34 chr1 65559897 65560344 -177104009 + Tigger2a DNA MER2_type 1 434 0 536 338 5 14 chr1 65560344 65560452 -177103901 - MIR SINE MIR -106 156 49 1813 243 72 7 chr1 65560899 65561344 -177103009 + L1ME1 LINE L1 36 509 -5887 379 214 11 0 chr1 65561352 65561441 -177102912 + L1ME1 LINE L1 2941 3030 -3185 3249 222 55 34 chr1 65561541 65562493 -177101860 + L1ME1 LINE L1 5271 6230 -5 498 293 77 90 chr1 65562700 65563479 -177100874 + L1M4 LINE L1 2261 3029 -3117 1683 138 12 94 chr1 65563533 65563873 -177100480 + AluSx SINE Alu 1 312 0 21 82 0 0 chr1 65563881 65563930 -177100423 + AT_rich Low_complexity Low_complexity 1 49 0 2323 87 0 7 chr1 65564027 65564327 -177100026 + AluSc SINE Alu 1 298 -11 420 211 20 109 chr1 65565405 65565552 -177098801 + MIR SINE MIR 34 167 -95 905 101 7 14 chr1 65565552 65565691 -177098662 + L1PA4 LINE L1 6015 6152 -3 364 321 75 0 chr1 65565761 65565921 -177098432 - MIR SINE MIR -52 210 41 186 273 55 0 chr1 65565948 65566003 -177098350 + L2 LINE L2 3198 3255 -17 402 293 8 8 chr1 65566007 65566130 -177098223 + L2 LINE L2 3191 3313 0 319 206 23 46 chr1 65566160 65566270 -177098083 + MIR SINE MIR 32 138 -70 249 299 45 52 chr1 65566734 65566868 -177097485 - MIR3 SINE MIR -61 147 15 387 204 43 11 chr1 65567002 65567095 -177097258 - MIR SINE MIR -90 172 77 469 280 30 35 chr1 65567203 65567403 -177096950 + MIR SINE MIR 58 256 -6 199 258 61 0 chr1 65567800 65567866 -177096487 + MIR SINE MIR 81 150 -58 189 321 50 14 chr1 65568095 65568235 -177096118 + L2 LINE L2 2040 2184 -1130 330 296 46 0 chr1 65568375 65568483 -177095870 - L2 LINE L2 -3 3310 3198 3564 131 10 39 chr1 65568808 65569420 -177094933 + Tigger1 DNA MER2_type 1825 2418 0 293 161 54 0 chr1 65569874 65569930 -177094423 + MIR SINE MIR 96 154 -108 346 312 13 13 chr1 65570243 65570400 -177093953 + MIR SINE MIR 92 248 -14 209 306 134 30 chr1 65570426 65570560 -177093793 - L2 LINE L2 -208 3064 2917 242 298 85 43 chr1 65571389 65571530 -177092823 - L2 LINE L2 0 3313 3167 238 247 113 31 chr1 65571575 65571672 -177092681 - MIR SINE MIR -55 153 93 275 296 92 0 chr1 65571749 65571847 -177092506 + L2 LINE L2 3173 3279 -34 332 314 75 38 chr1 65571882 65572041 -177092312 - MIR SINE MIR -15 247 83 441 296 92 19 chr1 65572345 65572551 -177091802 - MIR SINE MIR -30 232 12 683 334 52 25 chr1 65572943 65573350 -177091003 + L3 LINE CR1 940 1357 -220 293 225 34 0 chr1 65573468 65573546 -177090807 + MIR SINE MIR 81 162 -46 395 199 7 58 chr1 65573605 65573752 -177090601 + MIR SINE MIR 58 244 -18 349 240 39 39 chr1 65574129 65574233 -177090120 - MIR SINE MIR -127 135 32 549 191 78 26 chr1 65574526 65574641 -177089712 + MER3 DNA MER1_type 1 121 -88 314 304 82 15 chr1 65574641 65574776 -177089577 - MIR SINE MIR -107 155 12 450 315 7 7 chr1 65575084 65575227 -177089126 + MIR3 SINE MIR 48 190 -18 194 154 115 58 chr1 65575961 65576013 -177088340 + L2 LINE L2 3255 3309 -4 300 280 68 17 chr1 65576074 65576192 -177088161 - MIR SINE MIR -131 131 8 209 194 125 83 chr1 65576401 65576473 -177087880 + L2 LINE L2 3235 3309 -4 238 253 93 0 chr1 65576517 65576592 -177087761 + L2 LINE L2 3232 3313 0 301 242 0 0 chr1 65576823 65576889 -177087464 - MLT1K LTR MaLR -9 579 514 656 279 42 0 chr1 65577241 65577406 -177086947 - MER91A DNA MER1_type -24 172 1 327 326 161 22 chr1 65577629 65577859 -177086494 + L2 LINE L2 2371 2632 -682 2779 10 0 0 chr1 65577917 65578228 -177086125 - AluYa5 SINE Alu 0 311 1 438 241 143 89 chr1 65578233 65578436 -177085917 + MLT1H LTR MaLR 57 270 -279 314 253 11 11 chr1 65578523 65578614 -177085739 + MLT1G LTR MaLR 495 585 -5 253 342 86 53 chr1 65578615 65578954 -177085399 + L2 LINE L2 2628 2977 -337 595 317 59 5 chr1 65579209 65579411 -177084942 + MIR SINE MIR 10 222 -40 322 265 129 38 chr1 65579552 65579684 -177084669 + MIR3 SINE MIR 2 145 -63 262 274 137 0 chr1 65579918 65580042 -177084311 - L2 LINE L2 -52 3261 3121 236 353 65 14 chr1 65580084 65580223 -177084130 + L2 LINE L2 3144 3289 -24 768 301 43 53 chr1 65580940 65581316 -177083037 - L2 LINE L2 -21 3292 2921 212 270 117 58 chr1 65581432 65581569 -177082784 - L2 LINE L2 0 3313 3169 1496 228 60 16 chr1 65581629 65582064 -177082289 - Charlie4a DNA MER1_type -32 476 23 419 342 97 37 chr1 65582115 65582679 -177081674 - L2 LINE L2 -213 3059 2462 204 313 36 0 chr1 65583354 65583437 -177080916 - MIR SINE MIR -69 139 54 1988 138 0 0 chr1 65583815 65584112 -177080241 + AluSx SINE Alu 1 297 -15 282 29 0 0 chr1 65584121 65584156 -177080197 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2149 81 14 3 chr1 65584231 65584526 -177079827 + AluSq SINE Alu 16 313 0 217 296 0 45 chr1 65585432 65585564 -177078789 + GA-rich Low_complexity Low_complexity 2 127 0 * 225 212 0 31 chr1 65585519 65585603 -177078750 + A-rich Low_complexity Low_complexity 1 81 0 1854 239 8 54 chr1 65585734 65586237 -177078116 - MLT2B1 LTR ERVL -39 481 2 340 333 125 31 chr1 65586618 65586906 -177077447 + L1ME LINE L1 509 823 -5573 761 210 58 133 chr1 65586940 65587079 -177077274 + L1ME LINE L1 774 922 -5484 1532 203 7 7 chr1 65587079 65587375 -177076978 - AluJb SINE Alu -16 296 1 761 210 58 133 chr1 65587375 65587834 -177076519 + L1ME LINE L1 922 1247 -5159 792 259 38 0 chr1 65587834 65588046 -177076307 - MER58A DNA MER1_type -4 220 1 761 210 58 133 chr1 65588046 65588253 -177076100 + L1ME LINE L1 1247 1468 -4938 1553 216 111 11 chr1 65589292 65589751 -177074602 + L1ME LINE L1 1450 1954 -4452 1501 261 110 5 chr1 65589731 65590303 -177074050 + L1ME LINE L1 3513 4144 -2262 * 804 253 50 14 chr1 65640323 65640544 -177023809 - LTR8 LTR ERV1 -462 229 1 457 314 43 11 chr1 65641180 65641368 -177022985 - MIR SINE MIR -66 196 3 434 206 28 19 chr1 65641521 65641628 -177022725 + MIR SINE MIR 155 262 0 * 498 266 90 17 chr1 65641621 65641798 -177022555 - MIR SINE MIR -41 221 32 564 264 60 60 chr1 65642395 65642630 -177021723 + MIR SINE MIR 26 260 -2 251 274 0 0 chr1 65642678 65642729 -177021624 + L2 LINE L2 3210 3260 -12 241 324 79 46 chr1 65643709 65643925 -177020428 - L2 LINE L2 -1084 2230 2008 * 444 346 34 21 chr1 65643920 65644154 -177020199 + MIR SINE MIR 19 255 -7 565 196 9 0 chr1 65644272 65644379 -177019974 + L1PA16 LINE L1 6059 6166 0 2446 89 0 0 chr1 65644382 65644685 -177019668 + AluY SINE Alu 1 303 -8 497 243 133 57 chr1 65644886 65645149 -177019204 - L1ME4a LINE L1 -8 6113 5831 181 371 21 36 chr1 65645168 65645308 -177019045 - L2 LINE L2 -1362 1952 1815 2135 170 134 44 chr1 65645567 65646044 -177018309 + MLT2B1 LTR ERVL 1 520 0 243 310 155 30 chr1 65646084 65646387 -177017966 - L2 LINE L2 -160 3153 2813 1335 315 147 51 chr1 65646673 65647542 -177016811 - L1MC4 LINE L1 0 8042 7090 285 327 0 20 chr1 65647671 65647772 -177016581 - MLT1K LTR MaLR -486 102 4 855 270 35 67 chr1 65647882 65648197 -177016156 - MLT1J LTR MaLR -151 360 56 269 233 33 0 chr1 65648232 65648292 -177016061 - MLT1J LTR MaLR -446 65 4 330 302 31 23 chr1 65648669 65648798 -177015555 + MIR3 SINE MIR 2 131 -77 323 342 0 0 chr1 65649021 65649097 -177015256 + L2 LINE L2 3159 3234 -38 271 297 27 27 chr1 65649243 65649354 -177014999 - MIR SINE MIR -51 211 101 505 259 60 77 chr1 65649354 65649605 -177014748 + L1MC/D LINE L1 4412 4666 -1480 2347 70 0 3 chr1 65649605 65649911 -177014442 + AluY SINE Alu 1 305 0 505 259 60 77 chr1 65649911 65650652 -177013701 + L1MC/D LINE L1 4666 5310 -836 1614 217 112 69 chr1 65650652 65651172 -177013181 + MLT1F LTR MaLR 1 542 0 505 259 60 77 chr1 65651172 65651236 -177013117 + L1MC/D LINE L1 5310 5374 -772 574 187 73 0 chr1 65651240 65651363 -177012990 + L1MC4a LINE L1 5618 5749 -2059 1054 255 160 21 chr1 65651401 65651820 -177012533 - MLT1H LTR MaLR 0 549 73 847 212 69 26 chr1 65651861 65652231 -177012122 + L1MC4a LINE L1 5801 6231 -1577 703 235 55 32 chr1 65652264 65652481 -177011872 + L1MC4 LINE L1 7688 7909 -133 441 0 0 0 chr1 65652927 65652976 -177011377 + (TTA)n Simple_repeat Simple_repeat 3 51 0 13769 74 7 12 chr1 65652979 65653777 -177010576 - L1PA7 LINE L1 -21 6133 5332 2302 97 0 3 chr1 65653777 65654076 -177010277 + AluY SINE Alu 5 302 -9 13769 74 7 12 chr1 65654076 65655887 -177008466 - L1PA7 LINE L1 -822 5332 3522 5445 104 4 15 chr1 65655876 65656773 -177007580 - L1P3 LINE L1 -4596 1865 981 * 2832 50 0 15 chr1 65656908 65657247 -177007106 + L1PA7 LINE L1 5816 6149 -5 439 216 11 0 chr1 65657262 65657362 -177006991 + L1MC4 LINE L1 7897 7995 0 211 182 0 0 chr1 65658063 65658096 -177006257 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 2111 135 0 3 chr1 65658120 65658417 -177005936 + AluSx SINE Alu 1 296 -16 307 234 185 45 chr1 65658441 65658663 -177005690 - L2 LINE L2 -44 3228 2976 432 229 169 66 chr1 65658703 65658869 -177005484 + MER5A DNA MER1_type 7 189 0 233 185 19 37 chr1 65659117 65659171 -177005182 + L1P4 LINE L1 5612 5664 -502 233 257 53 80 chr1 65659369 65659482 -177004871 + MIR SINE MIR 31 140 -68 806 291 46 4 chr1 65659683 65659924 -177004429 - MIR SINE MIR 0 262 12 331 223 58 165 chr1 65659945 65660064 -177004289 + MER5A DNA MER1_type 18 112 -77 1623 157 3 38 chr1 65660064 65660420 -177003933 - AluJo SINE Alu 0 346 1 331 223 58 165 chr1 65660420 65660487 -177003866 + MER5A DNA MER1_type 112 185 -4 319 309 81 20 chr1 65660536 65660685 -177003668 - MIR SINE MIR -101 161 4 278 257 133 9 chr1 65661195 65661300 -177003053 - MIR SINE MIR -86 122 4 833 223 104 15 chr1 65661692 65661894 -177002459 - MIR SINE MIR -33 229 10 271 258 16 0 chr1 65662214 65662276 -177002077 + MIR3 SINE MIR 143 205 -3 1253 242 104 12 chr1 65662572 65662907 -177001446 + MLT1J LTR MaLR 146 511 0 283 200 32 32 chr1 65663000 65663125 -177001228 + GA-rich Low_complexity Low_complexity 1 125 0 285 316 104 53 chr1 65663201 65663634 -177000719 + L2 LINE L2 2560 3038 -234 409 245 41 0 chr1 65664253 65664351 -177000002 + MIR SINE MIR 91 192 -70 245 328 70 51 chr1 65664788 65665044 -176999309 + L3 LINE CR1 1019 1279 -298 244 311 14 27 chr1 65665245 65665319 -176999034 - Charlie8 DNA MER1_type -2344 73 1 571 228 24 8 chr1 65665487 65665614 -176998739 + MIR SINE MIR 9 137 -125 561 275 137 17 chr1 65665619 65665852 -176998501 - MIR SINE MIR 0 262 2 202 341 32 40 chr1 65665861 65665987 -176998366 + MIR SINE MIR 137 261 -1 474 33 0 0 chr1 65666629 65666689 -176997664 + (CA)n Simple_repeat Simple_repeat 2 61 0 286 272 37 0 chr1 65666800 65666881 -176997472 + MIR SINE MIR 45 128 -134 217 320 50 60 chr1 65667156 65667256 -176997097 - L2 LINE L2 -25 3247 3149 513 234 123 47 chr1 65667256 65667427 -176996926 + MER5A DNA MER1_type 1 184 -5 422 276 9 0 chr1 65667489 65667594 -176996759 - MIR SINE MIR -6 256 151 661 266 23 77 chr1 65668150 65668500 -176995853 + L1ME LINE L1 5468 5798 -323 644 195 0 8 chr1 65668508 65668626 -176995727 + L2 LINE L2 3193 3309 -4 287 227 133 47 chr1 65668700 65668828 -176995525 + MIR SINE MIR 118 256 -6 195 330 28 9 chr1 65669771 65669877 -176994476 + L3 LINE CR1 824 931 -646 295 311 10 10 chr1 65669951 65670054 -176994299 - MER5A DNA MER1_type -43 146 44 2899 216 97 46 chr1 65670698 65671827 -176992526 - L1ME2 LINE L1 -11 6222 5032 4764 257 84 36 chr1 65671838 65672744 -176991609 - L1ME2 LINE L1 -2062 4153 3291 1795 145 6 55 chr1 65672744 65673055 -176991298 - AluJb SINE Alu -16 296 1 4764 257 84 36 chr1 65673055 65674240 -176990113 - L1ME2 LINE L1 -2924 3291 2164 1092 203 35 69 chr1 65674240 65674472 -176989881 + MER58A DNA MER1_type 1 224 0 4764 257 84 36 chr1 65674472 65676319 -176988034 - L1ME2 LINE L1 -4051 2164 22 315 256 77 0 chr1 65676396 65676474 -176987879 + L3 LINE CR1 967 1050 -527 326 352 64 66 chr1 65676494 65677336 -176987017 - L2 LINE L2 0 3272 2429 395 247 62 10 chr1 65678016 65678113 -176986240 + MLT1J LTR MaLR 1 102 -409 627 332 62 36 chr1 65678279 65678637 -176985716 - LTR33 LTR ERVL -154 367 1 1128 229 119 10 chr1 65678652 65678954 -176985399 + MLT1J LTR MaLR 170 504 -7 283 331 21 14 chr1 65679878 65680023 -176984330 - L2 LINE L2 -234 3038 2893 2195 161 16 0 chr1 65680137 65680515 -176983838 + L1PB4 LINE L1 5766 6149 -7 219 136 45 0 chr1 65680552 65680596 -176983757 - MIR SINE MIR -33 229 184 188 226 81 0 chr1 65680949 65681011 -176983342 - MIR SINE MIR -12 250 184 456 245 86 108 chr1 65681367 65681645 -176982708 - MLT1J LTR MaLR -210 301 30 401 291 68 0 chr1 65681656 65681804 -176982549 - MIR SINE MIR -59 203 46 285 256 112 0 chr1 65681855 65681980 -176982373 + MIR SINE MIR 78 216 -46 1884 154 15 80 chr1 65682728 65683118 -176981235 + MLT1A1 LTR MaLR 1 365 0 266 308 101 31 chr1 65683340 65683567 -176980786 - L1MC/D LINE L1 -1948 5860 5618 301 324 69 6 chr1 65683577 65683750 -176980603 - L1P4 LINE L1 -613 5555 5372 184 282 204 10 chr1 65684311 65684414 -176979939 - L2 LINE L2 -5 3308 3186 1836 196 28 8 chr1 65684503 65684861 -176979492 + MLT1A1 LTR MaLR 1 365 0 422 272 76 6 chr1 65684865 65685023 -176979330 + MIR SINE MIR 92 260 -2 189 0 0 0 chr1 65685049 65685070 -176979283 + (TTA)n Simple_repeat Simple_repeat 3 23 0 293 274 24 12 chr1 65685245 65685329 -176979024 - MIR SINE MIR -125 137 53 202 304 80 36 chr1 65686149 65686261 -176978092 - MIR SINE MIR -62 146 30 188 339 51 25 chr1 65686442 65686560 -176977793 + L2 LINE L2 2852 2972 -300 279 157 0 0 chr1 65686561 65686612 -176977741 + GA-rich Low_complexity Low_complexity 1 51 0 249 291 0 23 chr1 65687212 65687298 -176977055 - L2 LINE L2 -1 3312 3229 193 318 176 0 chr1 65687337 65687422 -176976931 + MIR SINE MIR 43 142 -66 295 184 0 79 chr1 65687449 65687525 -176976828 - L2 LINE L2 -30 3242 3173 613 254 49 57 chr1 65687700 65687944 -176976409 + MIR SINE MIR 20 261 -1 225 365 77 0 chr1 65688680 65688784 -176975569 + L2 LINE L2 3160 3271 -1 192 270 60 30 chr1 65688787 65688887 -176975466 + L3 LINE CR1 1100 1202 -375 265 152 22 0 chr1 65688939 65688985 -176975368 - MLT2F LTR ERVL 0 663 617 180 152 0 0 chr1 65688987 65689020 -176975333 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 23 54 0 0 chr1 65689053 65689090 -176975263 + AT_rich Low_complexity Low_complexity 1 37 0 622 187 0 0 chr1 65689214 65689321 -176975032 - MLT1E3 LTR MaLR -472 152 46 513 248 0 8 chr1 65689326 65689447 -176974906 - MLT2F LTR ERVL -523 140 21 196 313 89 18 chr1 65689510 65689622 -176974731 + L3 LINE CR1 1270 1389 -188 1268 213 211 47 chr1 65690219 65690727 -176973626 - MLT1G1 LTR MaLR 0 595 5 211 269 15 15 chr1 65691037 65691104 -176973249 + MER5A DNA MER1_type 22 88 -101 701 293 28 16 chr1 65691982 65692235 -176972118 - MIR SINE MIR 0 262 7 2354 109 0 0 chr1 65692265 65692567 -176971786 + AluSx SINE Alu 1 302 -10 2077 119 7 23 chr1 65693465 65693767 -176970586 + AluSx SINE Alu 2 298 -14 305 312 51 0 chr1 65694056 65694194 -176970159 - L2 LINE L2 -610 2704 2560 187 289 58 0 chr1 65694323 65694375 -176969978 - L3 LINE CR1 -24 1553 1499 187 316 11 42 chr1 65695064 65695114 -176969239 + MIR SINE MIR 108 155 -107 1382 161 130 50 chr1 65695114 65695436 -176968917 - MER7A DNA MER2_type 0 346 1 187 316 11 42 chr1 65695436 65695480 -176968873 + MIR SINE MIR 155 199 -63 456 307 0 26 chr1 65696040 65696193 -176968160 + (TGGG)n Simple_repeat Simple_repeat 4 152 0 254 269 65 0 chr1 65696314 65696407 -176967946 - MER5A DNA MER1_type -79 110 12 295 358 41 45 chr1 65696702 65696923 -176967430 + MIR SINE MIR 20 239 -23 22 0 0 0 chr1 65697308 65697330 -176967023 + AT_rich Low_complexity Low_complexity 1 22 0 1714 155 0 87 chr1 65697996 65698319 -176966034 - AluJb SINE Alu -15 297 3 219 69 0 0 chr1 65698945 65698974 -176965379 + (TTCC)n Simple_repeat Simple_repeat 2 30 0 505 339 48 8 chr1 65699712 65699963 -176964390 + MIR SINE MIR 2 262 0 288 356 40 0 chr1 65700025 65700126 -176964227 - L2 LINE L2 -53 3219 3115 1017 275 31 22 chr1 65700133 65700453 -176963900 - LTR16A LTR ERVL 0 450 128 2068 150 3 3 chr1 65700515 65700821 -176963532 + AluSx SINE Alu 1 306 -6 267 31 0 0 chr1 65700830 65700862 -176963491 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 194 364 20 0 chr1 65701335 65701434 -176962919 - MIR SINE MIR -58 150 50 189 107 0 0 chr1 65701547 65701575 -176962778 - MIR3 SINE MIR -28 180 153 2609 72 32 3 chr1 65702081 65702426 -176961927 - THE1A LTR MaLR 0 355 1 408 341 42 14 chr1 65702842 65703059 -176961294 + MIR SINE MIR 21 243 -19 752 56 0 0 chr1 65703753 65703842 -176960511 - THE1A LTR MaLR 0 355 267 258 227 11 80 chr1 65704361 65704449 -176959904 - L2 LINE L2 -9 3263 3182 708 293 96 4 chr1 65704457 65704696 -176959657 - MIR SINE MIR 0 262 2 198 193 0 108 chr1 65704906 65704989 -176959364 - L2 LINE L2 -285 2987 2914 264 362 29 0 chr1 65705201 65705306 -176959047 - MIR SINE MIR -63 145 38 237 324 118 0 chr1 65705566 65705668 -176958685 - MIR SINE MIR -102 160 47 349 318 88 7 chr1 65705711 65705859 -176958494 - MIR SINE MIR -1 261 102 266 280 76 38 chr1 65706245 65706377 -176957976 + MIR SINE MIR 5 141 -121 2734 48 0 0 chr1 65706392 65706703 -176957650 - AluY SINE Alu 0 311 1 1482 171 54 13 chr1 65706895 65707214 -176957139 + MER33 DNA MER1_type 1 323 -1 268 118 78 0 chr1 65707220 65707271 -176957082 + L2 LINE L2 3259 3313 0 25 0 0 0 chr1 65707534 65707559 -176956794 + AT_rich Low_complexity Low_complexity 1 25 0 442 212 288 0 chr1 65708249 65708395 -176955958 - MER5A DNA MER1_type -1 188 1 1084 237 59 41 chr1 65708773 65709298 -176955055 - L2 LINE L2 -1 3312 2766 1510 183 39 0 chr1 65709626 65709938 -176954415 - MER33 DNA MER1_type 0 324 1 282 238 48 12 chr1 65710056 65710140 -176954213 + MIR SINE MIR 176 262 0 226 268 62 80 chr1 65710225 65710337 -176954016 + L2 LINE L2 3204 3313 0 476 313 7 7 chr1 65710519 65710663 -176953690 + MIR SINE MIR 1 144 -118 273 57 0 0 chr1 65710784 65710819 -176953534 + (TG)n Simple_repeat Simple_repeat 2 36 0 238 26 51 0 chr1 65711359 65711398 -176952955 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1019 163 62 0 chr1 65713073 65713251 -176951102 - MER5A DNA MER1_type 0 189 1 430 269 260 5 chr1 65713528 65713724 -176950629 + MIR SINE MIR 10 252 -10 321 380 46 20 chr1 65713748 65713939 -176950414 + L2 LINE L2 2511 2714 -600 1657 177 75 57 chr1 65713939 65714292 -176950061 + MSTB1 LTR MaLR 1 366 -66 2152 47 0 20 chr1 65714292 65714589 -176949764 - AluY SINE Alu 0 324 33 1657 177 75 57 chr1 65714589 65714658 -176949695 + MSTB1 LTR MaLR 366 432 0 321 380 46 20 chr1 65714658 65714769 -176949584 + L2 LINE L2 2714 2821 -493 252 167 0 21 chr1 65715048 65715096 -176949257 + MLT1J LTR MaLR 1 47 -464 228 333 28 0 chr1 65715110 65715182 -176949171 + LTR67 LTR ERVL 114 187 -370 236 233 17 17 chr1 65715534 65715594 -176948759 + LTR33A LTR ERVL 444 503 -20 2468 69 0 3 chr1 65715746 65716049 -176948304 + AluY SINE Alu 1 302 -9 342 348 31 40 chr1 65716525 65716752 -176947601 + MIR SINE MIR 25 249 -13 1096 136 0 0 chr1 65716850 65716997 -176947356 + FRAM SINE Alu 5 151 -25 2116 94 0 109 chr1 65718524 65718874 -176945479 + AluSq SINE Alu 1 312 -1 276 337 18 68 chr1 65718991 65719214 -176945139 - MIR SINE MIR -46 216 9 1541 236 82 27 chr1 65719301 65720102 -176944251 + L1MC4 LINE L1 5290 6157 -9 490 234 136 0 chr1 65720242 65720396 -176943957 + MIR SINE MIR 88 262 0 264 224 53 26 chr1 65721815 65721891 -176942462 - MLT1K LTR MaLR -2 586 509 1954 172 31 3 chr1 65722730 65723084 -176941269 - MLT1A1 LTR MaLR -1 364 1 258 287 74 28 chr1 65723491 65723687 -176940666 + MIR SINE MIR 10 214 -48 220 313 60 0 chr1 65723787 65723854 -176940499 + MIR SINE MIR 19 89 -173 * 415 217 16 85 chr1 65723852 65723981 -176940372 - L2 LINE L2 -4 3309 3190 466 321 7 7 chr1 65724151 65724291 -176940062 + MIR3 SINE MIR 31 170 -38 431 277 105 4 chr1 65724400 65724628 -176939725 - MIR SINE MIR -4 258 8 508 290 165 0 chr1 65725256 65725432 -176938921 - MIR SINE MIR -21 241 37 186 368 0 0 chr1 65726049 65726117 -176938236 + MIR SINE MIR 36 103 -105 438 250 55 33 chr1 65726574 65726739 -176937614 + MIR SINE MIR 42 206 -56 354 191 0 0 chr1 65726750 65726818 -176937535 + L1MC5 LINE L1 7712 7779 -182 6571 94 0 7 chr1 65726859 65727899 -176936454 - L1PA13 LINE L1 -1 6162 5120 4270 169 4 7 chr1 65727906 65728665 -176935688 + L1PA13 LINE L1 4379 5135 -1011 3114 184 48 3 chr1 65728656 65729682 -176934671 + L1MB7 LINE L1 4847 5913 -271 * 3969 79 0 2 chr1 65729682 65730157 -176934196 + L1PA8 LINE L1 5681 6171 -1 1525 172 46 14 chr1 65730157 65730439 -176933914 + L1MB8 LINE L1 5879 6172 -6 425 213 43 28 chr1 65730475 65730616 -176933737 + L1MC5 LINE L1 7794 7936 -25 218 273 57 11 chr1 65730739 65730827 -176933526 - L3b LINE CR1 -206 1377 1286 414 271 8 17 chr1 65731264 65731382 -176932971 + MLT1L LTR MaLR 124 240 -375 368 265 10 10 chr1 65731622 65731724 -176932629 + MLT1L LTR MaLR 471 572 -43 242 274 24 24 chr1 65731774 65731858 -176932495 + MIR SINE MIR 30 113 -95 886 201 46 0 chr1 65731872 65732046 -176932307 - MER5A DNA MER1_type -7 182 1 388 278 56 14 chr1 65732048 65732192 -176932161 + MIR SINE MIR 113 262 0 525 271 72 28 chr1 65732888 65733078 -176931275 - MIR SINE MIR -12 250 55 216 323 77 58 chr1 65733105 65733260 -176931093 - MIR SINE MIR -58 204 47 413 215 25 58 chr1 65733599 65733720 -176930633 - MIR SINE MIR -75 187 71 321 259 241 0 chr1 65733819 65733931 -176930422 + MIR SINE MIR 86 224 -38 246 32 0 0 chr1 65733959 65733990 -176930363 + (TG)n Simple_repeat Simple_repeat 2 32 0 1388 203 121 22 chr1 65734110 65734474 -176929879 - L1ME3A LINE L1 -6 6164 5765 281 282 29 38 chr1 65734496 65734644 -176929709 - MIR SINE MIR -62 146 34 387 330 39 69 chr1 65735039 65735272 -176929081 - L2 LINE L2 -64 3208 2983 543 267 27 33 chr1 65735303 65735453 -176928900 - MER5B DNA MER1_type -16 162 14 4178 161 23 46 chr1 65735691 65736435 -176927918 - L1MB3 LINE L1 -2 6181 5422 1883 114 0 8 chr1 65736435 65736689 -176927664 - AluSc SINE Alu -57 252 1 4178 161 23 46 chr1 65736689 65736714 -176927639 - L1MB3 LINE L1 -761 5422 5398 227 53 0 26 chr1 65736714 65736752 -176927601 + (TTGG)n Simple_repeat Simple_repeat 4 40 0 4178 161 23 46 chr1 65736752 65737464 -176926889 - L1MB3 LINE L1 -785 5398 4762 826 168 37 12 chr1 65737474 65737635 -176926718 - FRAM SINE Alu -9 167 3 3538 200 25 26 chr1 65737641 65738441 -176925912 - L1MB3 LINE L1 -1378 4768 3970 440 355 59 10 chr1 65738447 65738737 -176925616 - L2 LINE L2 -594 2720 2417 2297 95 6 13 chr1 65739106 65739421 -176924932 + AluSp SINE Alu 1 313 0 218 260 301 50 chr1 65740224 65740443 -176923910 + L2 LINE L2 2999 3272 0 2753 166 19 11 chr1 65740534 65740997 -176923356 - MLT1C LTR MaLR 0 467 1 258 275 64 37 chr1 65741117 65741226 -176923127 + MIR3 SINE MIR 94 205 -3 1337 148 56 18 chr1 65741794 65742219 -176922134 - LTR54 LTR ERV1 0 510 3 413 293 132 0 chr1 65742451 65742625 -176921728 + MIR SINE MIR 60 256 -6 180 197 49 66 chr1 65742645 65742706 -176921647 + L2 LINE L2 3214 3273 -40 2553 231 19 8 chr1 65743143 65743679 -176920674 + MLT1F LTR MaLR 1 542 0 1598 241 83 40 chr1 65743820 65744401 -176919952 + L1ME3A LINE L1 5560 6165 -5 319 336 51 30 chr1 65744565 65744800 -176919553 - MIR SINE MIR -3 259 20 208 93 70 0 chr1 65744890 65744933 -176919420 + (TATG)n Simple_repeat Simple_repeat 3 48 0 569 262 142 40 chr1 65745239 65745613 -176918740 + MLT1J LTR MaLR 50 461 -50 540 211 0 26 chr1 65746272 65746386 -176917967 - MIR SINE MIR -81 181 71 180 342 0 13 chr1 65746380 65746456 -176917897 + MIR SINE MIR 185 259 -3 * 810 262 9 31 chr1 65746616 65746659 -176917694 - MIR SINE MIR -32 230 188 2541 214 74 22 chr1 65746659 65747242 -176917111 - MER90 LTR ERV1 -1 613 1 810 262 9 31 chr1 65747242 65747427 -176916926 - MIR SINE MIR -74 188 7 348 290 89 8 chr1 65747934 65748058 -176916295 + MIR SINE MIR 70 203 -59 549 323 82 26 chr1 65748305 65748537 -176915816 + MIR SINE MIR 12 256 -6 687 260 35 0 chr1 65748963 65749132 -176915221 - MIR SINE MIR -74 188 14 414 248 149 37 chr1 65750242 65750403 -176913950 + MER5A DNA MER1_type 9 187 -2 2947 161 6 12 chr1 65751015 65751513 -176912840 + L1MB2 LINE L1 5670 6164 -7 180 286 18 0 chr1 65751535 65751591 -176912762 + MIR SINE MIR 90 146 -116 320 315 149 14 chr1 65751748 65752024 -176912329 + L2 LINE L2 2048 2360 -954 592 317 12 44 chr1 65752039 65752288 -176912065 - MLT1I LTR MaLR -71 338 98 240 226 0 65 chr1 65753078 65753171 -176911182 + LTR67 LTR ERVL 458 544 -13 241 170 0 38 chr1 65753171 65753224 -176911129 + MIR SINE MIR 92 142 -66 358 316 0 29 chr1 65753416 65753552 -176910801 - MIR SINE MIR -31 231 100 1217 136 0 0 chr1 65753564 65753740 -176910613 + AluSg/x SINE Alu 129 304 -8 259 364 10 0 chr1 65754348 65754447 -176909906 - MIR SINE MIR -64 144 45 2487 216 78 9 chr1 65754498 65755025 -176909328 - MLT1F1 LTR MaLR -4 563 1 347 288 75 44 chr1 65755071 65755297 -176909056 + L2 LINE L2 2726 2958 -356 319 276 0 67 chr1 65755468 65755573 -176908780 + L2 LINE L2 3216 3313 0 287 349 40 46 chr1 65755548 65755700 -176908653 + L3 LINE CR1 1400 1550 -27 * 276 30 0 0 chr1 65756429 65756462 -176907891 + (CA)n Simple_repeat Simple_repeat 1 33 0 383 165 10 29 chr1 65756556 65756659 -176907694 + CT-rich Low_complexity Low_complexity 1 101 0 196 152 0 0 chr1 65756901 65756934 -176907419 - MIR SINE MIR -71 137 105 2020 138 14 0 chr1 65757261 65757558 -176906795 + AluSx SINE Alu 1 301 -11 736 294 57 17 chr1 65757625 65757924 -176906429 - L3 LINE CR1 -73 1504 1194 553 350 16 0 chr1 65757999 65758193 -176906160 + MIR SINE MIR 56 252 -10 2420 66 0 10 chr1 65758347 65758651 -176905702 - AluSg SINE Alu -9 301 1 1275 140 16 0 chr1 65758685 65758871 -176905482 - MER5A DNA MER1_type 0 189 1 333 335 57 5 chr1 65758921 65759115 -176905238 - MIR SINE MIR -40 222 19 479 273 31 8 chr1 65759115 65759243 -176905110 - MIR SINE MIR -115 147 17 258 234 159 55 chr1 65759810 65759955 -176904398 + MIR SINE MIR 4 163 -99 207 315 139 42 chr1 65760080 65760245 -176904108 + L2 LINE L2 2910 3090 -182 256 304 82 22 chr1 65760803 65760938 -176903415 - L2 LINE L2 -319 2953 2811 245 311 76 45 chr1 65761491 65761623 -176902730 + MIR SINE MIR 16 151 -111 941 232 86 30 chr1 65761649 65762171 -176902182 - MLT1F LTR MaLR 0 559 19 241 250 42 104 chr1 65762281 65762377 -176901976 - MIR3 SINE MIR -14 194 105 223 364 78 22 chr1 65762518 65762663 -176901690 + MIR3 SINE MIR 3 152 -68 438 320 54 14 chr1 65762748 65762895 -176901458 - MIR SINE MIR -74 188 36 187 228 38 76 chr1 65763097 65763176 -176901177 - MIR SINE MIR -74 188 113 186 43 0 0 chr1 65763537 65763560 -176900793 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 429 248 17 26 chr1 65763974 65764091 -176900262 + MIR SINE MIR 31 146 -116 251 183 211 14 chr1 65764462 65764533 -176899820 + MIR3 SINE MIR 87 171 -37 630 243 109 30 chr1 65764560 65764762 -176899591 + MIR SINE MIR 31 248 -14 352 336 56 0 chr1 65765551 65765658 -176898695 + MIR SINE MIR 25 137 -71 1566 198 155 36 chr1 65765729 65766173 -176898180 - MLT1D LTR MaLR -2 503 7 542 310 83 8 chr1 65766439 65766681 -176897672 + MIR SINE MIR 3 262 0 12888 95 3 13 chr1 65767163 65769027 -176895326 + L1PA7 LINE L1 2 1854 -4607 14263 80 2 18 chr1 65769027 65770838 -176893515 + L1PA7 LINE L1 3837 5639 -830 2302 97 0 3 chr1 65770838 65771137 -176893216 - AluY SINE Alu -9 302 5 14263 80 2 18 chr1 65771137 65771939 -176892414 + L1PA7 LINE L1 5639 6452 -17 324 70 0 0 chr1 65771963 65772006 -176892347 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 203 262 0 0 chr1 65772470 65772512 -176891841 - MIR SINE MIR -113 149 108 1312 180 58 4 chr1 65772721 65773001 -176891352 + L1MB5 LINE L1 5657 5958 -216 446 211 9 64 chr1 65773002 65773111 -176891242 + L1MB5 LINE L1 6058 6160 -14 622 265 10 56 chr1 65773111 65773307 -176891046 - MLT1J LTR MaLR -85 426 240 226 358 47 14 chr1 65773311 65773526 -176890827 - L2 LINE L2 -207 3065 2844 626 325 48 8 chr1 65774507 65774759 -176889594 - MIR SINE MIR 0 262 1 577 287 61 19 chr1 65774988 65775417 -176888936 + LTR33 LTR ERVL 4 508 -13 269 279 37 134 chr1 65776245 65776514 -176887839 - L2 LINE L2 -1 3271 3029 267 337 111 15 chr1 65776993 65777192 -176887161 + L2 LINE L2 2842 3059 -213 247 353 169 24 chr1 65777352 65777607 -176886746 - L2 LINE L2 0 3272 2981 998 16 16 0 chr1 65777627 65777750 -176886603 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 241 116 0 47 chr1 65777750 65777793 -176886560 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 461 161 17 25 chr1 65777793 65777911 -176886442 + GA-rich Low_complexity Low_complexity 4 120 0 2422 107 51 25 chr1 65778471 65778826 -176885527 - THE1B LTR MaLR 0 364 1 444 123 0 0 chr1 65779033 65779106 -176885247 + (TG)n Simple_repeat Simple_repeat 2 74 0 379 55 0 0 chr1 65779135 65779190 -176885163 - L1PA14 LINE L1 -1 6160 6106 2163 189 64 14 chr1 65779191 65779631 -176884722 - MLT2B1 LTR ERVL -58 462 1 1364 216 109 57 chr1 65779631 65779663 -176884690 + MLT1F1 LTR MaLR 8 37 -530 1834 170 170 34 chr1 65779663 65780074 -176884279 - MLT1C LTR MaLR 0 467 1 1364 216 109 57 chr1 65780074 65780581 -176883772 + MLT1F1 LTR MaLR 37 567 0 302 207 281 0 chr1 65780775 65780857 -176883496 + MIR SINE MIR 49 153 -109 306 320 60 0 chr1 65780860 65780960 -176883393 - L2 LINE L2 -6 3266 3161 649 283 47 9 chr1 65781060 65781272 -176883081 - MIR SINE MIR -42 220 1 620 330 107 14 chr1 65781289 65781643 -176882710 - LTR16A LTR ERVL -8 442 56 187 229 21 0 chr1 65782214 65782262 -176882091 + L2 LINE L2 3261 3309 -4 2290 158 17 8 chr1 65782614 65782976 -176881377 + MLT1A1 LTR MaLR 1 365 0 262 315 70 88 chr1 65783445 65783490 -176880863 - L2 LINE L2 -52 3220 3176 2356 104 0 0 chr1 65783490 65783789 -176880564 + AluSx SINE Alu 1 299 -13 262 315 70 88 chr1 65783789 65784218 -176880135 - L2 LINE L2 -96 3176 2736 477 342 36 10 chr1 65784620 65784813 -176879540 + MIR SINE MIR 9 206 -56 495 296 77 23 chr1 65785597 65785817 -176878536 + MIR SINE MIR 19 250 -12 497 262 47 7 chr1 65786138 65786287 -176878066 - L2 LINE L2 -3 3310 3156 830 303 29 0 chr1 65786464 65786702 -176877651 + MIR SINE MIR 16 260 -2 614 319 42 17 chr1 65787008 65787246 -176877107 - MIR SINE MIR -4 258 15 234 274 16 0 chr1 65787304 65787366 -176876987 - L2 LINE L2 -1 3271 3209 2065 118 0 11 chr1 65787530 65787817 -176876536 + AluSc SINE Alu 1 284 -25 195 69 0 0 chr1 65787820 65787849 -176876504 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 369 258 91 15 chr1 65788205 65788337 -176876016 + L2 LINE L2 401 542 -2772 1511 346 29 12 chr1 65788738 65789649 -176874704 - HERV16 LTR ERVL -606 5158 4168 2203 294 19 29 chr1 65789662 65790309 -176874044 - HERV16 LTR ERVL -2621 2375 1736 2417 312 70 30 chr1 65790357 65791232 -176873121 - HERV16 LTR ERVL -3422 1574 608 2234 106 0 3 chr1 65791232 65791534 -176872819 + AluSc SINE Alu 1 301 -8 2417 312 70 30 chr1 65791534 65792004 -176872349 - HERV16 LTR ERVL -4388 608 158 376 233 57 50 chr1 65792080 65792239 -176872114 - LTR16A LTR ERVL -195 255 96 257 253 293 7 chr1 65792406 65792556 -176871797 + L2 LINE L2 3103 3295 -18 1390 171 60 73 chr1 65792799 65793115 -176871238 + AluJo SINE Alu 1 312 0 662 274 105 18 chr1 65793771 65793990 -176870363 + MIR SINE MIR 17 254 -8 420 325 47 12 chr1 65794012 65794181 -176870172 - MIR SINE MIR -77 185 11 221 204 0 0 chr1 65794182 65794215 -176870138 + (CA)n Simple_repeat Simple_repeat 1 36 -8 2384 126 33 33 chr1 65794215 65794579 -176869774 + THE1B LTR MaLR 1 364 0 221 204 0 0 chr1 65794579 65794589 -176869764 + (CA)n Simple_repeat Simple_repeat 35 44 0 25 31 0 0 chr1 65794704 65794736 -176869617 + AT_rich Low_complexity Low_complexity 1 32 0 462 299 56 33 chr1 65794777 65795006 -176869347 - MIR SINE MIR -28 234 3 32 26 0 0 chr1 65795778 65795817 -176868536 + AT_rich Low_complexity Low_complexity 1 39 0 446 302 50 6 chr1 65796019 65796178 -176868175 - MIR SINE MIR -40 222 57 438 248 48 19 chr1 65796998 65797103 -176867250 + MER81 DNA DNA 3 110 -4 184 225 25 0 chr1 65797107 65797147 -176867206 + L2 LINE L2 3189 3229 -43 196 313 0 0 chr1 65797155 65797203 -176867150 + MIR SINE MIR 102 149 -113 186 43 0 0 chr1 65797270 65797293 -176867060 + (TTG)n Simple_repeat Simple_repeat 2 24 0 182 259 0 74 chr1 65797382 65797436 -176866917 + L2 LINE L2 3198 3247 -25 231 269 51 0 chr1 65797441 65797519 -176866834 + (TAAA)n Simple_repeat Simple_repeat 4 85 0 237 297 55 11 chr1 65798101 65798192 -176866161 + L2 LINE L2 3147 3241 -31 714 112 15 15 chr1 65798200 65798334 -176866019 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 272 185 0 15 chr1 65798320 65798385 -176865968 + G-rich Low_complexity Low_complexity 2 65 0 * 258 303 34 0 chr1 65798500 65798589 -176865764 - MIR SINE MIR -3 259 168 * 519 253 66 35 chr1 65798584 65798782 -176865571 + L2 LINE L2 3106 3309 -4 240 35 0 0 chr1 65798803 65798832 -176865521 + (CAA)n Simple_repeat Simple_repeat 2 30 0 216 348 73 44 chr1 65798874 65799078 -176865275 - MIR SINE MIR -32 230 21 1131 228 45 42 chr1 65800292 65800670 -176863683 + L1MC4a LINE L1 6828 7206 -602 2004 220 31 35 chr1 65800675 65801217 -176863136 + L1MC4a LINE L1 7269 7808 0 232 237 145 101 chr1 65801568 65801796 -176862557 - MIR SINE MIR -14 248 11 1620 146 8 4 chr1 65801822 65802069 -176862284 - AluJo SINE Alu -60 252 5 252 0 0 0 chr1 65802341 65802369 -176861984 + (A)n Simple_repeat Simple_repeat 1 28 0 322 244 17 0 chr1 65802477 65802596 -176861757 + CT-rich Low_complexity Low_complexity 3 123 0 224 286 63 0 chr1 65803062 65803125 -176861228 + MER5A DNA MER1_type 110 176 -13 422 284 135 7 chr1 65803697 65803845 -176860508 + MIR SINE MIR 19 185 -77 * 736 298 33 47 chr1 65803832 65804195 -176860158 + L2 LINE L2 2956 3313 0 710 143 0 0 chr1 65804334 65804446 -176859907 + L1MD3 LINE L1 7875 7986 -9 475 315 80 43 chr1 65804800 65805145 -176859208 + L1MDa LINE L1 1537 1931 -970 1880 168 9 94 chr1 65805145 65805569 -176858784 - MLT1B LTR MaLR 0 390 3 475 315 80 43 chr1 65805569 65805689 -176858664 + L1MDa LINE L1 1931 2045 -856 338 321 98 19 chr1 65805695 65806112 -176858241 + L1MDa LINE L1 2504 2953 -3587 183 246 0 0 chr1 65806160 65806217 -176858136 + (TA)n Simple_repeat Simple_repeat 2 58 0 323 173 0 0 chr1 65806463 65806515 -176857838 + L2 LINE L2 3221 3272 0 6919 95 2 13 chr1 65806599 65807810 -176856543 - L1PA8 LINE L1 -1 6171 4961 3214 101 1 3 chr1 65808010 65808538 -176855815 - L1PA8A LINE L1 -687 5444 4917 268 266 16 0 chr1 65808538 65808602 -176855751 - MIR SINE MIR -33 229 165 1011 115 6 42 chr1 65808605 65808770 -176855583 + LTR10A LTR ERV1 390 548 -61 659 278 23 11 chr1 65808771 65808947 -176855406 - MIR SINE MIR -82 180 3 2072 143 0 3 chr1 65809066 65809366 -176854987 - AluSx SINE Alu -13 299 1 292 285 60 60 chr1 65810396 65810547 -176853806 - MIR SINE MIR -61 201 51 336 326 51 0 chr1 65810696 65810794 -176853559 - MIR3 SINE MIR -9 199 97 186 331 156 67 chr1 65810897 65811302 -176853051 - L2 LINE L2 0 3272 2832 354 250 77 39 chr1 65811385 65811541 -176852812 - MIR SINE MIR -73 189 28 276 30 0 0 chr1 65811920 65811953 -176852400 + (TC)n Simple_repeat Simple_repeat 2 34 0 44123 47 2 1 chr1 65812492 65818631 -176845722 + L1PA4 LINE L1 9 6155 0 359 305 38 0 chr1 65818650 65818781 -176845572 - LTR33A LTR ERVL -7 516 381 232 363 38 25 chr1 65818915 65819075 -176845278 - LTR33 LTR ERVL -349 172 11 364 302 74 5 chr1 65819153 65819355 -176844998 - L1ME4a LINE L1 -175 5946 5731 2684 231 50 82 chr1 65819356 65820893 -176843460 + L1ME3 LINE L1 4680 6151 -11 785 249 31 31 chr1 65820991 65821216 -176843137 + MIR SINE MIR 1 225 -37 1015 145 13 0 chr1 65821817 65821969 -176842384 - MER2 DNA MER2_type -184 161 8 336 176 0 0 chr1 65822008 65822076 -176842277 + (TG)n Simple_repeat Simple_repeat 2 69 0 677 338 88 35 chr1 65822109 65822597 -176841756 + LTR33 LTR ERVL 1 514 -7 365 348 30 15 chr1 65822691 65822826 -176841527 + L2 LINE L2 3125 3261 -11 185 328 0 17 chr1 65822835 65822893 -176841460 + MIR3 SINE MIR 129 185 -23 223 333 54 54 chr1 65823619 65823748 -176840605 + L2 LINE L2 3102 3230 -42 521 259 120 0 chr1 65823774 65823932 -176840421 + MER104 DNA MER2_type 4 180 0 324 320 130 10 chr1 65823937 65824137 -176840216 - MIR SINE MIR -19 243 20 254 293 143 14 chr1 65825101 65825248 -176839105 - L2 LINE L2 -182 3090 2925 2286 206 27 93 chr1 65825562 65825651 -176838702 + MLT2B3 LTR ERVL 6 99 -455 1923 105 4 0 chr1 65825651 65825928 -176838425 - AluSp SINE Alu 0 312 35 2286 206 27 93 chr1 65825928 65826388 -176837965 + MLT2B3 LTR ERVL 99 518 -36 482 0 17 0 chr1 65826388 65826446 -176837907 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2286 206 27 93 chr1 65826446 65826481 -176837872 + MLT2B3 LTR ERVL 518 554 0 196 274 113 0 chr1 65826827 65826889 -176837464 + L2 LINE L2 2901 2969 -303 22 56 0 0 chr1 65826921 65826957 -176837396 + AT_rich Low_complexity Low_complexity 1 36 0 367 308 35 0 chr1 65826968 65827111 -176837242 + MER103 DNA DNA 12 159 -7 302 228 13 13 chr1 65827209 65827288 -176837065 + GA-rich Low_complexity Low_complexity 2 80 0 21 0 0 0 chr1 65827905 65827926 -176836427 + AT_rich Low_complexity Low_complexity 1 21 0 3743 154 67 7 chr1 65828017 65828694 -176835659 - MER72 LTR ERV1 0 722 6 1999 172 53 34 chr1 65829667 65830085 -176834268 - MSTB LTR MaLR 0 426 1 551 230 95 0 chr1 65830302 65830450 -176833903 + MIR SINE MIR 101 262 0 1488 173 88 3 chr1 65830499 65830852 -176833501 - LTR52 LTR ERVL -2 419 37 918 176 181 5 chr1 65830854 65831247 -176833106 + LTR54B LTR ERV1 8 510 0 777 247 133 61 chr1 65831565 65832092 -176832261 + MLT1F1 LTR MaLR 3 567 0 2884 95 10 20 chr1 65832271 65832835 -176831518 - L1PA13 LINE L1 -469 5694 5133 3313 104 8 2 chr1 65832835 65833313 -176831040 + L1PA13 LINE L1 5681 6162 -1 735 217 43 87 chr1 65833313 65833613 -176830740 - LTR37B LTR ERV1 -172 296 10 195 276 270 8 chr1 65833997 65834118 -176830235 + MIR SINE MIR 16 166 -62 263 306 48 16 chr1 65834525 65834649 -176829704 + MIR SINE MIR 63 190 -72 283 242 25 0 chr1 65834694 65834794 -176829559 + L1ME LINE L1 5732 5834 -336 1324 89 18 110 chr1 65834848 65835140 -176829213 + L1PB3 LINE L1 5233 5500 -654 992 9 0 0 chr1 65835166 65835278 -176829075 + L1PA5 LINE L1 6031 6142 -12 405 155 6 19 chr1 65835278 65835302 -176829051 + (TA)n Simple_repeat Simple_repeat 1 24 -134 4156 114 49 0 chr1 65835302 65835980 -176828373 + L1PB3 LINE L1 5483 6147 -7 405 155 6 19 chr1 65835980 65836070 -176828283 + (TA)n Simple_repeat Simple_repeat 24 158 0 23 33 0 0 chr1 65836264 65836294 -176828059 + AT_rich Low_complexity Low_complexity 1 30 0 402 294 56 20 chr1 65836455 65836707 -176827646 - Tigger8 DNA MER2_type -210 456 196 2257 169 47 5 chr1 65836755 65837162 -176827191 + MSTB LTR MaLR 1 424 -2 280 352 75 38 chr1 65837202 65837415 -176826938 + L2 LINE L2 2867 3087 -185 2358 66 7 3 chr1 65837701 65838006 -176826347 - AluY SINE Alu -5 306 1 362 338 133 13 chr1 65838487 65838721 -176825632 + MIR SINE MIR 1 262 0 256 309 72 66 chr1 65838721 65838873 -176825480 + MIR SINE MIR 99 251 -11 414 0 0 0 chr1 65838951 65838997 -176825356 + (TC)n Simple_repeat Simple_repeat 1 46 0 234 0 0 0 chr1 65838996 65839022 -176825331 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 255 257 0 3 chr1 65839889 65840008 -176824345 - MER117 DNA MER1_type -42 155 1 406 363 34 7 chr1 65840235 65840381 -176823972 - L2 LINE L2 0 3272 3123 319 304 176 0 chr1 65840366 65840514 -176823839 - L3 LINE CR1 -320 1257 1084 * 563 301 21 21 chr1 65840737 65840817 -176823536 + MIR SINE MIR 12 91 -171 664 255 0 92 chr1 65840817 65841013 -176823340 + MER45A DNA AcHobo 1 178 0 563 301 21 21 chr1 65841013 65841118 -176823235 + MIR SINE MIR 90 197 -65 240 204 41 0 chr1 65841752 65841801 -176822552 - L2 LINE L2 -12 3260 3210 616 279 46 71 chr1 65841830 65842070 -176822283 - MIR SINE MIR -21 241 8 194 286 53 53 chr1 65842255 65842388 -176821965 + MIR SINE MIR 118 250 -12 1505 225 73 87 chr1 65842478 65843180 -176821173 - HsTC2a DNA Tc2 -36 708 17 2238 110 7 0 chr1 65843181 65843511 -176820842 + AluSx SINE Alu 3 334 0 276 277 0 60 chr1 65843642 65843725 -176820628 - MIR3 SINE MIR -45 163 86 251 292 15 11 chr1 65844298 65844405 -176819948 - L1ME2 LINE L1 -72 6094 5985 207 206 0 59 chr1 65844449 65844517 -176819836 + (ATTAG)n Simple_repeat Simple_repeat 5 68 0 3462 219 38 24 chr1 65844575 65846261 -176818092 + L1 LINE L1 1 2533 -4676 2037 205 9 9 chr1 65846275 65846734 -176817619 - L1 LINE L1 -1044 5102 4644 9254 178 37 26 chr1 65846768 65847507 -176816846 + L1 LINE L1 3862 4591 -2617 1336 194 101 25 chr1 65847507 65847785 -176816568 - AluJo SINE Alu -13 299 1 9254 178 37 26 chr1 65847785 65849236 -176815117 + L1 LINE L1 4591 6078 -1130 1291 190 15 7 chr1 65849235 65849597 -176814756 - L1ME LINE L1 -620 5542 5176 * 666 303 36 58 chr1 65849830 65850288 -176814065 + MLT1K LTR MaLR 73 588 0 2907 13 0 0 chr1 65850469 65850787 -176813566 - AluYb8 SINE Alu 0 318 1 252 224 0 0 chr1 65851071 65851138 -176813215 + (TATG)n Simple_repeat Simple_repeat 1 67 0 252 224 0 0 chr1 65851495 65851562 -176812791 + (TATG)n Simple_repeat Simple_repeat 1 67 0 311 338 7 19 chr1 65851575 65851729 -176812624 + (TG)n Simple_repeat Simple_repeat 1 152 0 299 256 5 5 chr1 65851753 65851940 -176812413 + (TG)n Simple_repeat Simple_repeat 1 187 0 469 311 55 6 chr1 65851961 65852125 -176812228 - MER91A DNA MER1_type -1 195 24 291 259 133 44 chr1 65852814 65852949 -176811404 + MIR SINE MIR 86 232 -30 228 200 15 108 chr1 65853030 65853095 -176811258 + L2 LINE L2 3209 3267 -5 212 167 0 0 chr1 65853464 65853500 -176810853 + GA-rich Low_complexity Low_complexity 1 36 0 294 290 47 28 chr1 65853751 65853858 -176810495 - MIR SINE MIR -120 142 34 186 344 53 30 chr1 65854017 65854148 -176810205 - L2 LINE L2 -221 3051 2918 340 321 28 0 chr1 65854212 65854318 -176810035 + MIR SINE MIR 72 180 -82 435 259 178 30 chr1 65854386 65854583 -176809770 + L2 LINE L2 3088 3313 0 1917 173 93 6 chr1 65855340 65855704 -176808649 - MSTD LTR MaLR 0 396 1 3862 119 45 35 chr1 65855960 65856666 -176807687 + LTR1 LTR ERV1 73 785 0 1180 175 57 0 chr1 65856668 65856879 -176807474 + MER58A DNA MER1_type 2 224 0 287 372 51 7 chr1 65856952 65857089 -176807264 + MIR3 SINE MIR 10 152 -56 431 205 116 89 chr1 65857137 65857361 -176806992 - MLT1J LTR MaLR 0 511 282 198 277 82 82 chr1 65857544 65857703 -176806650 - MIR SINE MIR -27 235 77 244 253 63 25 chr1 65857823 65857902 -176806451 + MIR SINE MIR 103 184 -78 287 330 10 10 chr1 65857965 65858062 -176806291 + MIR3 SINE MIR 84 180 -28 282 292 62 42 chr1 65858119 65858263 -176806090 + MIR SINE MIR 46 192 -70 212 246 15 92 chr1 65858261 65858326 -176806027 + L2 LINE L2 3134 3193 -79 * 23 0 0 0 chr1 65858850 65858873 -176805480 + GC_rich Low_complexity Low_complexity 1 23 0 234 128 0 0 chr1 65859127 65859166 -176805187 + (TCC)n Simple_repeat Simple_repeat 3 41 0 180 0 0 0 chr1 65859256 65859276 -176805077 + (GGGAA)n Simple_repeat Simple_repeat 4 23 0 2403 38 27 3 chr1 65859627 65859919 -176804434 + AluY SINE Alu 1 299 -12 358 349 60 68 chr1 65860971 65861323 -176803030 - L2 LINE L2 0 3272 2924 1648 153 114 52 chr1 65861655 65862116 -176802237 - LTR10A LTR ERV1 -63 546 13 398 258 46 7 chr1 65862204 65862355 -176801998 - L1MA10 LINE L1 -10 6324 6168 4272 218 73 42 chr1 65862363 65863790 -176800563 - L1M4 LINE L1 -778 5368 3874 2278 78 3 72 chr1 65863790 65864123 -176800230 - AluSp SINE Alu -3 310 1 4272 218 73 42 chr1 65864123 65864454 -176799899 - L1M4 LINE L1 -2272 3874 3555 1981 109 9 52 chr1 65864449 65864798 -176799555 + L1PA15 LINE L1 5695 6028 -137 * 423 144 24 16 chr1 65864802 65864927 -176799426 - Zaphod DNA AcHobo -3216 815 690 366 210 32 48 chr1 65864949 65865073 -176799280 - L1M4 LINE L1 -2588 3558 3437 8056 166 40 8 chr1 65865077 65867753 -176796600 - L1MA9 LINE L1 -5 6307 3543 1568 241 62 24 chr1 65867753 65868289 -176796064 - L1MEc LINE L1 -5803 593 38 313 261 109 8 chr1 65868515 65868634 -176795719 - LTR33 LTR ERVL -131 390 260 247 305 46 53 chr1 65868687 65868838 -176795515 - LTR33A LTR ERVL -359 164 15 2030 157 3 0 chr1 65869119 65869425 -176794928 + AluJo SINE Alu 1 307 -5 282 333 29 0 chr1 65869565 65869670 -176794683 + MIR SINE MIR 50 157 -105 542 309 22 27 chr1 65870248 65870471 -176793882 + L3 LINE CR1 1163 1384 -193 889 185 17 17 chr1 65870637 65870810 -176793543 - MER5A DNA MER1_type 0 189 17 407 315 72 0 chr1 65871145 65871367 -176792986 - L1MC/D LINE L1 -2159 5649 5412 286 311 99 31 chr1 65871434 65871656 -176792697 - L2 LINE L2 -346 2968 2732 1872 146 31 17 chr1 65871780 65872074 -176792279 + AluSx SINE Alu 1 298 -14 6471 77 0 7 chr1 65873350 65874390 -176789963 - L1PA8A LINE L1 0 6131 5104 216 346 71 16 chr1 65874394 65874521 -176789832 + MIR SINE MIR 47 180 -82 1148 180 5 0 chr1 65875209 65875409 -176788944 - MLT1A1 LTR MaLR -164 201 1 2886 113 0 11 chr1 65875580 65875655 -176788698 + L1PB1 LINE L1 5716 5790 -361 282 56 0 0 chr1 65875655 65875691 -176788662 + (CA)n Simple_repeat Simple_repeat 1 36 0 2886 113 0 11 chr1 65875691 65876044 -176788309 + L1PB1 LINE L1 5790 6141 -10 2407 75 3 16 chr1 65876044 65876351 -176788002 - AluY SINE Alu -8 303 1 2886 113 0 11 chr1 65876351 65876362 -176787991 + L1PB1 LINE L1 6141 6151 0 223 260 141 68 chr1 65876533 65876710 -176787643 - MIR SINE MIR -38 224 35 317 275 9 92 chr1 65876827 65876936 -176787417 - L2 LINE L2 -21 3251 3152 305 380 0 8 chr1 65877453 65877574 -176786779 + CT-rich Low_complexity Low_complexity 1 120 0 471 233 82 44 chr1 65879069 65879228 -176785125 + MIR SINE MIR 27 191 -71 281 246 87 0 chr1 65879374 65879443 -176784910 + MIR SINE MIR 41 115 -147 373 344 66 22 chr1 65880137 65880364 -176783989 + MIR SINE MIR 2 238 -24 277 213 13 40 chr1 65880406 65880481 -176783872 - L2 LINE L2 0 3272 3200 183 286 82 0 chr1 65881082 65881131 -176783222 + L2 LINE L2 3160 3212 -60 684 202 22 34 chr1 65881158 65881336 -176783017 - MER104 DNA MER2_type -4 176 1 368 296 89 101 chr1 65881403 65881818 -176782535 - L2 LINE L2 -5 3267 2858 341 302 86 7 chr1 65883048 65883187 -176781166 + MIR SINE MIR 97 246 -16 250 356 119 16 chr1 65883310 65883504 -176780849 + L2 LINE L2 3100 3313 0 244 236 56 14 chr1 65883933 65884005 -176780348 - L2 LINE L2 -66 3247 3173 772 287 35 9 chr1 65884137 65884367 -176779986 - MIR SINE MIR -7 255 20 27 0 0 0 chr1 65884367 65884394 -176779959 + AT_rich Low_complexity Low_complexity 1 27 0 1512 77 20 5 chr1 65884395 65884590 -176779763 - L1PB1 LINE L1 -9 6142 5945 304 290 47 9 chr1 65884630 65884737 -176779616 - L2 LINE L2 -280 2992 2882 1013 220 14 10 chr1 65885680 65885889 -176778464 + MIR SINE MIR 17 226 -36 361 279 27 87 chr1 65886266 65886353 -176778000 - MIR SINE MIR -4 258 186 2927 0 0 0 chr1 65886353 65886662 -176777691 - AluYa5 SINE Alu -2 309 1 361 279 27 87 chr1 65886662 65886757 -176777596 - MIR SINE MIR -76 186 87 195 325 130 39 chr1 65886918 65887072 -176777281 + L2 LINE L2 3105 3272 0 180 271 17 34 chr1 65887082 65887141 -176777212 + L2 LINE L2 2943 3000 -272 2289 67 0 14 chr1 65887158 65887478 -176776875 + AluY SINE Alu 1 316 0 394 247 0 0 chr1 65887698 65887775 -176776578 + L2 LINE L2 3193 3269 -3 193 213 21 0 chr1 65887849 65887896 -176776457 - MIR SINE MIR -98 164 117 338 209 0 77 chr1 65888234 65888325 -176776028 - L2 LINE L2 -1 3271 3188 420 203 36 72 chr1 65888566 65888704 -176775649 - MIR SINE MIR -96 166 34 15266 130 26 6 chr1 65888899 65891243 -176773110 - Tigger1 DNA MER2_type -26 2392 1 1228 149 48 0 chr1 65891243 65891451 -176772902 - Tigger1 DNA MER2_type -1 2417 2200 973 144 0 0 chr1 65891447 65891586 -176772767 - Tigger1 DNA MER2_type -2279 139 1 * 398 299 42 69 chr1 65891591 65891837 -176772516 + L2 LINE L2 2767 3005 -267 1017 186 40 10 chr1 65891837 65892036 -176772317 - MER3 DNA MER1_type -4 205 1 398 299 42 69 chr1 65892036 65892074 -176772279 + L2 LINE L2 3005 3043 -229 229 311 66 0 chr1 65892283 65892344 -176772009 + L2 LINE L2 3134 3198 -74 2081 112 0 0 chr1 65892407 65892683 -176771670 + AluSg SINE Alu 33 308 -2 243 304 167 0 chr1 65893068 65893170 -176771183 + L2 LINE L2 3151 3269 -3 606 263 228 14 chr1 65893506 65893791 -176770562 + L2 LINE L2 2876 3221 -92 313 290 20 30 chr1 65894301 65894401 -176769952 + L3b LINE CR1 1390 1488 -95 303 320 23 23 chr1 65895120 65895248 -176769105 - MIR3 SINE MIR -78 130 3 297 322 22 0 chr1 65895589 65895679 -176768674 - MIR SINE MIR -160 102 11 279 269 30 15 chr1 65895795 65895862 -176768491 - MIR SINE MIR -104 104 37 428 206 167 0 chr1 65896087 65896189 -176768164 + MIR SINE MIR 2 120 -142 2077 142 0 3 chr1 65896221 65896530 -176767823 - AluSx SINE Alu -4 308 1 185 209 239 0 chr1 65896575 65896642 -176767711 + MIR SINE MIR 168 250 -12 23 0 0 0 chr1 65896788 65896811 -176767542 + AT_rich Low_complexity Low_complexity 1 23 0 2707 223 124 17 chr1 65897155 65898530 -176765823 - L1MB8 LINE L1 -3 6175 4948 201 74 0 0 chr1 65898530 65898557 -176765796 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2308 45 4 0 chr1 65898566 65898832 -176765521 - L1PA8 LINE L1 -3 6169 5903 2707 223 124 17 chr1 65898832 65899024 -176765329 - L1MB8 LINE L1 -1237 4941 4414 293 196 0 0 chr1 65899025 65899081 -176765272 - MLT2B3 LTR ERVL 0 520 465 235 193 35 0 chr1 65899053 65899110 -176765243 - LTR66 LTR ERVL -153 457 399 * 2120 197 33 65 chr1 65899141 65899680 -176764673 - MLT2B3 LTR ERVL -40 508 1 3563 214 43 20 chr1 65899680 65900599 -176763754 - L1MB8 LINE L1 -1729 4417 3477 22 70 0 0 chr1 65900802 65900845 -176763508 + AT_rich Low_complexity Low_complexity 1 43 0 1852 135 17 9 chr1 65901028 65901377 -176762976 + Tigger4(Zombi) DNA MER2_type 1 2731 0 353 256 128 29 chr1 65901380 65901552 -176762801 - L1MC/D LINE L1 -2323 5485 5297 2269 103 7 0 chr1 65901559 65901849 -176762504 - AluSq SINE Alu -21 292 1 21 36 0 0 chr1 65902826 65902854 -176761499 + AT_rich Low_complexity Low_complexity 1 28 0 417 266 107 28 chr1 65903189 65903366 -176760987 + MIR SINE MIR 34 224 -38 221 270 14 54 chr1 65903626 65903700 -176760653 - L2 LINE L2 -17 3255 3185 304 359 85 27 chr1 65903760 65903983 -176760370 + L3 LINE CR1 1289 1524 -53 307 316 84 39 chr1 65904220 65904375 -176759978 + MER5B DNA MER1_type 17 178 0 362 317 8 17 chr1 65904225 65904345 -176760008 - MER5A DNA MER1_type -21 168 50 304 321 61 70 chr1 65905441 65905771 -176758582 + L2 LINE L2 2941 3267 -5 392 255 39 35 chr1 65906063 65906184 -176758169 - MER5B DNA MER1_type -71 107 1 1982 155 61 18 chr1 65906657 65906986 -176757367 + MER2 DNA MER2_type 1 343 -1 429 275 93 16 chr1 65907102 65907284 -176757069 + MIR SINE MIR 65 260 -2 497 293 29 67 chr1 65908675 65908883 -176755470 - MIR SINE MIR -34 228 29 590 183 103 32 chr1 65908892 65909018 -176755335 - AluSq/x SINE Alu -176 136 2 195 42 0 0 chr1 65909031 65909055 -176755298 + (T)n Simple_repeat Simple_repeat 1 24 0 4351 29 0 6 chr1 65909186 65909675 -176754678 - L1PA4 LINE L1 -4 6151 5666 4747 33 7 3 chr1 65909675 65910251 -176754102 + L1P LINE L1 4773 5350 -796 180 329 145 0 chr1 65910269 65910345 -176754008 - MIR SINE MIR -83 125 39 387 328 24 18 chr1 65910918 65911058 -176753295 + MIR3 SINE MIR 18 157 -51 185 249 268 14 chr1 65911201 65911307 -176753046 - MIR SINE MIR -78 130 1 24 0 0 0 chr1 65911694 65911718 -176752635 + AT_rich Low_complexity Low_complexity 1 24 0 470 208 239 63 chr1 65911893 65912052 -176752301 - MER5A DNA MER1_type -1 188 2 322 240 60 0 chr1 65912281 65912381 -176751972 - L2 LINE L2 -22 3250 3145 447 383 105 9 chr1 65912943 65913036 -176751317 + L2 LINE L2 2827 2910 -403 1639 194 33 21 chr1 65913036 65913372 -176750981 + MER58B DNA MER1_type 2 341 0 447 383 105 9 chr1 65913372 65913717 -176750636 + L2 LINE L2 2910 3307 -6 322 325 86 18 chr1 65913739 65913902 -176750451 - L2 LINE L2 -684 2630 2457 184 294 73 0 chr1 65914420 65914488 -176749865 - L3b LINE CR1 -225 1358 1286 539 265 88 17 chr1 65915146 65915327 -176749026 + MIR SINE MIR 20 213 -49 440 267 47 47 chr1 65915700 65915872 -176748481 - MIR SINE MIR -18 244 73 989 239 27 19 chr1 65916053 65916162 -176748191 - MIR SINE MIR 0 262 155 186 43 0 0 chr1 65916162 65916185 -176748168 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1795 171 0 4 chr1 65916185 65916466 -176747887 - AluJb SINE Alu -32 280 1 989 239 27 19 chr1 65916466 65916614 -176747739 - MIR SINE MIR -106 156 2 384 261 30 52 chr1 65916728 65916862 -176747491 - L2 LINE L2 -5 3267 3137 419 303 66 38 chr1 65916989 65917276 -176747077 - L2 LINE L2 -353 2961 2667 584 0 0 14 chr1 65917307 65917378 -176746975 - L1PA4 LINE L1 0 6155 6086 429 260 16 16 chr1 65917764 65917887 -176746466 - MIR SINE MIR -127 135 13 996 298 6 46 chr1 65917937 65918283 -176746070 + MER102b DNA MER1_type 5 336 -5 402 247 60 53 chr1 65918399 65918549 -176745804 + L2 LINE L2 2906 3056 -216 21 36 0 0 chr1 65919422 65919450 -176744903 + AT_rich Low_complexity Low_complexity 1 28 0 228 325 36 12 chr1 65919505 65919588 -176744765 - MIR SINE MIR -90 172 88 409 262 8 71 chr1 65919737 65919863 -176744490 + L2 LINE L2 3151 3268 -4 212 318 40 56 chr1 65920415 65920541 -176743812 - L2 LINE L2 0 3272 3149 238 216 54 0 chr1 65920596 65920670 -176743683 - L1MC4a LINE L1 -1 7807 7730 423 293 99 38 chr1 65920878 65921090 -176743263 - MIR SINE MIR -4 258 34 291 54 0 0 chr1 65922207 65922244 -176742109 + (TTA)n Simple_repeat Simple_repeat 2 38 0 282 301 90 23 chr1 65922541 65922674 -176741679 + MIR3 SINE MIR 1 142 -66 221 250 143 12 chr1 65922971 65923055 -176741298 - MIR3 SINE MIR -107 101 7 534 292 36 0 chr1 65923277 65923414 -176740939 - L2 LINE L2 -1 3312 3171 335 254 18 35 chr1 65924212 65924381 -176739972 + T-rich Low_complexity Low_complexity 1 166 0 381 302 78 50 chr1 65925222 65925401 -176738952 - MIR SINE MIR -59 203 20 862 244 19 28 chr1 65925468 65925681 -176738672 - MIR SINE MIR -21 241 31 204 40 0 0 chr1 65926597 65926622 -176737731 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 543 333 12 50 chr1 65926641 65926881 -176737472 - L2 LINE L2 -35 3237 3007 260 114 91 0 chr1 65926898 65926942 -176737411 + MLT2B1 LTR ERVL 473 520 0 276 318 141 34 chr1 65926994 65927435 -176736918 - L2 LINE L2 -809 2505 2018 499 284 98 10 chr1 65927916 65928106 -176736247 - MIR SINE MIR -50 212 11 297 336 133 5 chr1 65928871 65929082 -176735271 - L2 LINE L2 -207 3065 2828 21 36 0 0 chr1 65929982 65930010 -176734343 + AT_rich Low_complexity Low_complexity 1 28 0 857 114 0 0 chr1 65930898 65931012 -176733341 + AluSg SINE Alu 1 114 -196 41829 38 4 4 chr1 65931012 65937169 -176727184 + L1PA3 LINE L1 2 6155 0 1349 134 0 10 chr1 65937173 65937375 -176726978 + AluSc SINE Alu 106 305 -4 189 0 0 0 chr1 65937971 65937992 -176726361 + (T)n Simple_repeat Simple_repeat 1 21 0 266 222 37 0 chr1 65938742 65938796 -176725557 - L2 LINE L2 -8 3305 3250 219 244 0 0 chr1 65939262 65939307 -176725046 - L2 LINE L2 -75 3238 3194 2743 106 0 3 chr1 65939331 65939707 -176724646 - THE1C LTR MaLR 0 375 1 191 246 29 29 chr1 65940004 65940073 -176724280 + L2 LINE L2 3164 3232 -81 1981 128 86 3 chr1 65940247 65940583 -176723770 + THE1B LTR MaLR 1 364 0 297 0 0 0 chr1 65941254 65941287 -176723066 + (CA)n Simple_repeat Simple_repeat 2 34 0 3960 128 48 11 chr1 65941288 65941893 -176722460 - Tigger3(Golem) DNA MER2_type -1 3028 2390 7297 38 6 1 chr1 65941893 65943505 -176720848 - L1PA5 LINE L1 0 6154 4535 3960 128 48 11 chr1 65943505 65943623 -176720730 - Tigger3(Golem) DNA MER2_type -639 2390 2278 655 178 0 0 chr1 65943614 65943721 -176720632 - Tigger3(Golem) DNA MER2_type -2921 108 2 * 432 0 0 0 chr1 65943722 65943770 -176720583 + (TG)n Simple_repeat Simple_repeat 2 49 0 380 299 43 0 chr1 65945119 65945236 -176719117 + MIR SINE MIR 63 184 -78 280 345 41 53 chr1 65945251 65945422 -176718931 + MER5A DNA MER1_type 21 189 0 4196 113 3 3 chr1 65945513 65946123 -176718230 + MER4B LTR ERV1 1 610 0 334 250 83 38 chr1 65946707 65946839 -176717514 + MIR SINE MIR 1 138 -124 344 286 107 22 chr1 65947469 65947647 -176716706 - MIR SINE MIR 0 262 70 2359 172 91 0 chr1 65948106 65948634 -176715719 - L1MC3 LINE L1 -8 7777 7202 284 235 0 47 chr1 65948648 65948733 -176715620 - MLT1F1 LTR MaLR -439 128 48 251 170 0 0 chr1 65948739 65948792 -176715561 - L1MC3 LINE L1 -682 7103 7051 21 57 0 0 chr1 65948957 65948992 -176715361 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 65949678 65949699 -176714654 + AT_rich Low_complexity Low_complexity 1 21 0 272 287 62 65 chr1 65949714 65949989 -176714364 - L1MC4 LINE L1 -10 8032 7759 298 140 0 0 chr1 65950783 65950840 -176713513 - L1MB8 LINE L1 -21 6157 6101 779 210 15 15 chr1 65950857 65951057 -176713296 - L1MB4 LINE L1 -1 6179 5980 1769 123 0 0 chr1 65951058 65951294 -176713059 - AluSg SINE Alu -23 287 52 2355 184 22 49 chr1 65951320 65951912 -176712441 - L1MB4 LINE L1 -176 6004 5429 566 301 44 26 chr1 65952361 65952590 -176711763 - MLT1J LTR MaLR -43 468 236 194 105 26 0 chr1 65952974 65953012 -176711341 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 193 318 24 24 chr1 65954550 65954635 -176709718 + MIR3 SINE MIR 121 205 -3 418 194 73 8 chr1 65956335 65956459 -176707894 + MER69 DNA AcHobo 2383 2514 -12 305 296 254 0 chr1 65956518 65956687 -176707666 + MIR SINE MIR 48 259 -3 416 412 43 38 chr1 65956933 65957353 -176707000 + L2 LINE L2 2832 3253 -19 386 214 19 39 chr1 65957572 65957675 -176706678 + L2 LINE L2 3173 3273 -40 875 266 31 13 chr1 65957731 65957960 -176706393 - MIR SINE MIR -20 242 10 955 201 0 26 chr1 65958088 65958282 -176706071 + MER5A DNA MER1_type 1 189 0 469 289 103 5 chr1 65958728 65958922 -176705431 + MIR SINE MIR 13 225 -37 1955 145 14 7 chr1 65960338 65960628 -176703725 - AluSx SINE Alu -18 294 3 474 191 76 0 chr1 65961166 65961271 -176703082 + MIR SINE MIR 108 220 -42 440 283 52 37 chr1 65961408 65961599 -176702754 - MIR SINE MIR -13 249 56 234 219 229 10 chr1 65961623 65961719 -176702634 + MIR SINE MIR 101 217 -45 207 146 21 21 chr1 65962627 65962675 -176701678 + T-rich Low_complexity Low_complexity 3 50 0 986 176 0 6 chr1 65962864 65963029 -176701324 - AluJb SINE Alu -12 300 137 333 285 45 54 chr1 65963637 65963778 -176700575 - MIR SINE MIR -49 159 11 199 265 31 61 chr1 65964076 65964174 -176700179 + L2 LINE L2 3145 3239 -74 224 245 0 0 chr1 65964577 65964626 -176699727 + L2 LINE L2 3265 3313 0 22 35 0 0 chr1 65965287 65965316 -176699037 + AT_rich Low_complexity Low_complexity 1 29 0 283 370 62 21 chr1 65965584 65965827 -176698526 - L2 LINE L2 -192 3080 2828 791 216 84 11 chr1 65965876 65966066 -176698287 + MIR SINE MIR 28 231 -31 31 26 0 0 chr1 65966072 65966110 -176698243 + AT_rich Low_complexity Low_complexity 1 38 0 1192 137 10 0 chr1 65966267 65966464 -176697889 + L1PA10 LINE L1 5960 6158 -10 2943 206 8 13 chr1 65968201 65968818 -176695535 - MER82 DNA MER2_type 0 653 40 488 299 119 8 chr1 65969120 65969364 -176694989 + LTR33A LTR ERVL 125 395 -128 202 337 0 0 chr1 65970268 65970351 -176694002 + MIR SINE MIR 160 242 -20 216 257 27 14 chr1 65970635 65970709 -176693644 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 217 264 155 47 chr1 65971615 65971691 -176692662 - MIR SINE MIR -30 232 166 198 0 0 0 chr1 65971691 65971713 -176692640 + (TA)n Simple_repeat Simple_repeat 1 22 0 217 264 155 47 chr1 65971713 65971765 -176692588 - MIR SINE MIR -96 166 90 744 264 74 29 chr1 65971895 65972137 -176692216 - MIR SINE MIR -3 259 7 463 276 102 33 chr1 65972371 65972578 -176691775 - MIR SINE MIR -30 232 13 562 248 8 5 chr1 65972622 65972868 -176691485 - MER113 DNA MER1_type? -35 486 211 3675 210 50 4 chr1 65973063 65973990 -176690363 - L1MC4a LINE L1 -91 7717 6749 194 31 0 62 chr1 65974713 65974745 -176689608 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 308 279 226 26 chr1 65974752 65975057 -176689296 - L2 LINE L2 -18 3295 2930 * 346 370 65 48 chr1 65975053 65975407 -176688946 + L2 LINE L2 2853 3212 -60 234 267 33 22 chr1 65975446 65975536 -176688817 + (TGAA)n Simple_repeat Simple_repeat 1 91 0 1844 157 0 11 chr1 65975783 65976064 -176688289 + AluSx SINE Alu 18 295 -17 322 226 220 6 chr1 65976639 65976798 -176687555 - LTR33 LTR ERVL 0 521 329 411 326 14 0 chr1 65976908 65977055 -176687298 - LTR33 LTR ERVL -372 149 1 332 289 139 20 chr1 65977655 65977856 -176686497 + L2 LINE L2 3011 3235 -37 781 175 19 58 chr1 65978294 65978500 -176685853 + MER106A DNA MER1_type 32 229 -7 210 221 65 65 chr1 65978518 65978595 -176685758 - MIR SINE MIR 0 262 186 579 300 14 47 chr1 65978719 65978995 -176685358 - MLT1L LTR MaLR -201 414 148 236 188 42 0 chr1 65978995 65979043 -176685310 - MER3 DNA MER1_type 0 209 160 3529 173 62 30 chr1 65979050 65979908 -176684445 - L1MB7 LINE L1 -22 6162 5278 935 189 0 6 chr1 65979905 65980080 -176684273 - MER3 DNA MER1_type -82 127 1 * 997 224 9 36 chr1 65980306 65980397 -176683956 - MER58A DNA MER1_type -2196 224 132 1122 162 100 180 chr1 65980397 65980898 -176683455 - MER4C LTR ERV1 -4 461 1 997 224 9 36 chr1 65980898 65981025 -176683328 - MER58A DNA MER1_type -2288 132 12 204 135 0 0 chr1 65981216 65981253 -176683100 + (TGG)n Simple_repeat Simple_repeat 1 37 0 222 301 96 44 chr1 65981264 65981400 -176682953 - L2 LINE L2 -545 2769 2627 641 240 58 46 chr1 65983198 65983523 -176680830 + L1MC5 LINE L1 7452 7780 -181 482 221 0 8 chr1 65983545 65983672 -176680681 + CT-rich Low_complexity Low_complexity 1 126 0 237 275 12 158 chr1 65984189 65984354 -176679999 - MER5A DNA MER1_type -29 149 21 1771 157 13 7 chr1 65984499 65984798 -176679555 + AluJb SINE Alu 1 301 -11 285 299 115 23 chr1 65984906 65985080 -176679273 - MIR SINE MIR -6 256 67 393 300 91 34 chr1 65985547 65985810 -176678543 + L2 LINE L2 2582 2859 -455 2342 101 0 7 chr1 65986352 65986660 -176677693 + AluSc SINE Alu 1 306 -3 349 252 189 0 chr1 65986745 65986856 -176677497 + L2 LINE L2 3141 3272 0 547 335 84 9 chr1 65987046 65987261 -176677092 + MIR SINE MIR 20 250 -12 253 339 23 35 chr1 65987728 65987902 -176676451 + L2 LINE L2 2807 2978 -335 297 264 264 37 chr1 65988650 65988896 -176675457 + L2 LINE L2 3012 3313 0 331 313 12 25 chr1 65989863 65990023 -176674330 + MIR3 SINE MIR 3 160 -48 549 274 7 14 chr1 65990371 65990517 -176673836 - MIR SINE MIR -115 147 3 223 203 47 47 chr1 65990670 65990734 -176673619 + MIR SINE MIR 85 148 -114 199 304 139 0 chr1 65991242 65991321 -176673032 - L2 LINE L2 -1353 1961 1872 277 311 0 22 chr1 65991730 65991820 -176672533 + (CA)n Simple_repeat Simple_repeat 1 88 0 403 199 7 110 chr1 65993802 65993938 -176670415 + MER21B LTR ERV1 1 122 -741 * 2815 207 99 44 chr1 65993916 65994650 -176669703 + MER21B LTR ERV1 20 794 -69 257 308 10 0 chr1 65994771 65994875 -176669478 + (TAG)n Simple_repeat Simple_repeat 3 107 0 285 269 87 48 chr1 65994909 65995013 -176669340 - MIR SINE MIR -149 113 6 222 419 37 7 chr1 65995021 65995157 -176669196 + L2 LINE L2 3096 3235 -37 1258 158 18 31 chr1 65995180 65995402 -176668951 - MER20 DNA MER1_type 0 219 1 309 351 6 36 chr1 65996028 65996193 -176668160 + MIR SINE MIR 56 215 -47 219 237 280 0 chr1 65996264 65996357 -176667996 + L2 LINE L2 3189 3307 -6 1813 157 65 21 chr1 65996603 65996941 -176667412 - MLT1A1 LTR MaLR 0 365 13 538 265 44 22 chr1 65997165 65997346 -176667007 - MIR SINE MIR -3 259 75 451 300 160 18 chr1 65997559 65997813 -176666540 + L2 LINE L2 2822 3038 -234 393 58 0 0 chr1 65997813 65997865 -176666488 + (TG)n Simple_repeat Simple_repeat 2 53 0 451 300 160 18 chr1 65997865 65998003 -176666350 + L2 LINE L2 3038 3270 -2 215 256 44 67 chr1 65998045 65998135 -176666218 - MIR SINE MIR -147 115 28 266 172 31 0 chr1 65998641 65998705 -176665648 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 444 311 87 21 chr1 66000134 66000375 -176663978 - MIR SINE MIR -1 261 5 205 309 119 12 chr1 66001253 66001337 -176663016 + L2 LINE L2 3175 3267 -5 241 350 113 27 chr1 66001526 66001897 -176662456 - L3b LINE CR1 -28 1555 1153 195 355 146 36 chr1 66002655 66002875 -176661478 - L2 LINE L2 -4 3268 3025 269 303 64 28 chr1 66003709 66003818 -176660535 - MIR SINE MIR -58 204 92 192 250 13 53 chr1 66003876 66003952 -176660401 - L3 LINE CR1 -1 1576 1504 330 239 54 62 chr1 66003980 66004110 -176660243 + L2 LINE L2 2954 3082 -190 299 269 39 0 chr1 66004186 66004264 -176660089 + MIR SINE MIR 2 82 -180 342 0 0 0 chr1 66004494 66004532 -176659821 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 1400 116 37 0 chr1 66006354 66006570 -176657783 - L1MA5A LINE L1 -1 6296 6073 336 87 0 0 chr1 66006590 66006636 -176657717 + L1MA5A LINE L1 6074 6119 -178 2051 141 3 6 chr1 66006636 66006949 -176657404 + MER1B DNA MER1_type 28 339 0 430 88 44 15 chr1 66006950 66007018 -176657335 - L1MA5A LINE L1 -216 6081 6012 249 237 387 0 chr1 66007121 66007214 -176657139 + L2 LINE L2 3179 3307 -6 559 288 83 35 chr1 66007942 66008171 -176656182 + MIR SINE MIR 8 247 -15 1496 293 110 22 chr1 66009329 66009584 -176654769 - HAL1 LINE L1 -1756 751 520 2315 143 30 28 chr1 66009584 66009947 -176654406 + THE1B LTR MaLR 1 364 0 1496 293 110 22 chr1 66009947 66010381 -176653972 - HAL1 LINE L1 -1987 520 1 213 286 29 67 chr1 66010711 66010816 -176653537 - L2 LINE L2 0 3272 3172 611 186 62 77 chr1 66011227 66011363 -176652990 - L1MDa LINE L1 -3713 2827 2693 2251 95 7 10 chr1 66011363 66011658 -176652695 - AluSg SINE Alu -16 294 1 611 186 62 77 chr1 66011658 66011715 -176652638 - L1MDa LINE L1 -3847 2693 2637 212 0 36 0 chr1 66011722 66011750 -176652603 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1210 230 0 25 chr1 66011771 66012049 -176652304 + AluJo SINE Alu 16 286 -26 245 242 63 11 chr1 66012053 66012148 -176652205 - L1MDa LINE L1 -3899 2641 2542 2914 66 20 27 chr1 66012249 66012658 -176651695 - L1P4 LINE L1 -382 5786 5381 1647 190 80 20 chr1 66013336 66013688 -176650665 + THE1C LTR MaLR 3 375 0 338 320 40 24 chr1 66013933 66014058 -176650295 - L2 LINE L2 -2 3270 3144 200 259 12 0 chr1 66014418 66014499 -176649854 + (TA)n Simple_repeat Simple_repeat 2 83 0 569 248 99 94 chr1 66014602 66015175 -176649178 - HAL1 LINE L1 -789 1718 1143 973 306 68 37 chr1 66016354 66016782 -176647571 - MLT1H LTR MaLR -10 539 99 217 314 31 92 chr1 66016964 66017193 -176647160 - L2 LINE L2 -189 3083 2869 193 218 55 18 chr1 66017862 66017917 -176646436 - MIR SINE MIR -134 74 18 629 294 28 24 chr1 66017997 66018208 -176646145 + MIR SINE MIR 20 231 -31 279 175 0 0 chr1 66018271 66018328 -176646025 + (ATGGTG)n Simple_repeat Simple_repeat 6 62 0 676 291 81 9 chr1 66018817 66019040 -176645313 + MIR SINE MIR 12 250 -12 607 258 60 36 chr1 66019096 66019344 -176645009 - LTR33A LTR ERVL -1 522 269 220 325 126 26 chr1 66019850 66020001 -176644352 + L2 LINE L2 3045 3210 -62 304 241 0 11 chr1 66020229 66020316 -176644037 - L2 LINE L2 -273 2999 2914 191 304 0 0 chr1 66022361 66022407 -176641946 - L2 LINE L2 -24 3248 3203 627 341 24 4 chr1 66022430 66022679 -176641674 - MIR SINE MIR -5 257 4 398 314 36 0 chr1 66023162 66023299 -176641054 + MIR3 SINE MIR 37 178 -30 348 286 53 30 chr1 66023497 66023630 -176640723 + MIR SINE MIR 6 141 -121 452 49 37 12 chr1 66024059 66024140 -176640213 + (TA)n Simple_repeat Simple_repeat 2 84 0 36 40 0 0 chr1 66024140 66024190 -176640163 + AT_rich Low_complexity Low_complexity 1 50 0 4381 171 80 36 chr1 66024252 66025131 -176639222 + MER21A LTR ERV1 15 931 0 367 327 9 0 chr1 66025713 66025823 -176638530 + L2 LINE L2 3187 3297 -16 25419 43 50 2 chr1 66025985 66029175 -176635178 - L1P LINE L1 -2800 3346 3 497 293 83 8 chr1 66029181 66029434 -176634919 - L1M4 LINE L1 -1780 4366 4095 451 237 82 65 chr1 66029449 66029681 -176634672 - L1M4 LINE L1 -2098 4048 3813 360 266 45 69 chr1 66029680 66030066 -176634287 - L1ME LINE L1 -4910 1160 784 * 3522 167 8 37 chr1 66030887 66031539 -176632814 + MER52A LTR ERV1 1123 1755 0 488 212 80 0 chr1 66031542 66031655 -176632698 + MIR SINE MIR 111 232 -30 360 314 38 0 chr1 66031772 66031877 -176632476 - L2 LINE L2 -31 3282 3174 489 253 16 33 chr1 66031889 66032071 -176632282 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 445 326 0 17 chr1 66032037 66032215 -176632138 + (TG)n Simple_repeat Simple_repeat 2 176 0 * 192 179 0 0 chr1 66032230 66032269 -176632084 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 400 310 48 7 chr1 66032468 66032613 -176631740 - L2 LINE L2 0 3272 3122 535 238 265 11 chr1 66032891 66033080 -176631273 + MIR SINE MIR 23 259 -3 417 270 40 26 chr1 66034027 66034179 -176630174 - MER5A DNA MER1_type 0 189 36 244 258 101 11 chr1 66034463 66034552 -176629801 - MIR SINE MIR -93 115 19 196 272 120 64 chr1 66035105 66035230 -176629123 + L2 LINE L2 3138 3269 -3 192 154 77 0 chr1 66035456 66035495 -176628858 - MIR SINE MIR -158 104 63 352 282 89 24 chr1 66036452 66036576 -176627777 - L2 LINE L2 -5 3267 3136 294 321 64 9 chr1 66037227 66037336 -176627017 + MIR SINE MIR 16 130 -78 376 285 7 76 chr1 66037553 66037635 -176626718 - MIR SINE MIR -112 150 81 2282 81 0 10 chr1 66037635 66037932 -176626421 - AluY SINE Alu -17 294 1 376 285 7 76 chr1 66037932 66037993 -176626360 - MIR SINE MIR -181 81 17 238 276 57 49 chr1 66039389 66039512 -176624841 + L3 LINE CR1 288 411 -1166 850 289 25 0 chr1 66040338 66040577 -176623776 - MER46C DNA MER2_type -14 324 80 247 271 42 10 chr1 66040635 66040731 -176623622 + L2 LINE L2 2890 2988 -284 285 279 172 25 chr1 66040849 66040971 -176623382 - MIR SINE MIR -117 145 6 261 330 31 0 chr1 66041448 66041545 -176622808 - MIR SINE MIR -1 261 162 319 300 0 0 chr1 66042162 66042232 -176622121 - MIR SINE MIR -137 125 56 437 234 38 63 chr1 66042415 66042573 -176621780 - MER5A DNA MER1_type 0 189 36 256 342 81 0 chr1 66042589 66042700 -176621653 + L2 LINE L2 3149 3268 -4 208 258 161 32 chr1 66043700 66043824 -176620529 - L2 LINE L2 -49 3264 3125 1381 239 38 38 chr1 66043824 66044247 -176620106 + L1ME3A LINE L1 5525 5947 -223 305 339 88 47 chr1 66044690 66045074 -176619279 - L2 LINE L2 -410 2904 2505 1687 177 66 21 chr1 66045333 66045712 -176618641 + L1MC4 LINE L1 7438 7833 -209 262 324 66 58 chr1 66046129 66046545 -176617808 - L2 LINE L2 -227 3045 2629 229 368 43 30 chr1 66046591 66046822 -176617531 - L2 LINE L2 -211 3061 2828 664 226 85 74 chr1 66046911 66047288 -176617065 - L1MC5 LINE L1 -31 7930 7550 2289 103 3 0 chr1 66047297 66047598 -176616755 - AluSx SINE Alu -10 302 1 1545 178 10 30 chr1 66048180 66048483 -176615870 + AluJb SINE Alu 2 298 -14 328 233 153 43 chr1 66048757 66048920 -176615433 - MIR SINE MIR -29 233 53 291 349 55 0 chr1 66049100 66049209 -176615144 + L2 LINE L2 3121 3235 -37 31032 73 6 167 chr1 66050948 66052621 -176611732 + L1PA6 LINE L1 193 2133 -4021 261 0 0 0 chr1 66052621 66052650 -176611703 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 31032 73 6 167 chr1 66052650 66052681 -176611672 + L1PA6 LINE L1 2133 2167 -3987 2514 39 0 0 chr1 66052681 66052961 -176611392 - L1PA3 LINE L1 -5 6150 5871 31032 73 6 167 chr1 66052961 66058352 -176606001 + L1PA6 LINE L1 2167 6151 -3 185 316 163 32 chr1 66058352 66058542 -176605811 + L2 LINE L2 1666 1880 -1434 190 281 0 18 chr1 66058610 66058667 -176605686 + L2 LINE L2 3258 3313 0 2097 121 3 0 chr1 66058721 66059047 -176605306 - AluSp SINE Alu 0 313 1 2345 102 0 0 chr1 66059430 66059733 -176604620 + AluY SINE Alu 1 303 -8 1048 207 108 71 chr1 66060049 66060372 -176603981 - MSTD LTR MaLR -1 395 61 15116 65 5 1 chr1 66060477 66063185 -176601168 + L1PA3 LINE L1 3463 6152 -3 2135 268 99 40 chr1 66063210 66064874 -176599479 + L1ME3A LINE L1 4383 6170 0 201 74 0 0 chr1 66065227 66065254 -176599099 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 624 273 93 19 chr1 66065958 66066163 -176598190 + MIR SINE MIR 6 225 -37 368 276 29 71 chr1 66066359 66066529 -176597824 + L2 LINE L2 3106 3268 -4 2392 84 13 0 chr1 66066623 66066932 -176597421 - AluSp SINE Alu 0 313 1 209 304 155 8 chr1 66066946 66067075 -176597278 - MIR3 SINE MIR -67 141 7 1143 243 54 46 chr1 66068257 66068712 -176595641 - MER39 LTR ERV1 0 686 257 368 312 34 99 chr1 66069231 66069494 -176594859 + L2 LINE L2 3027 3272 0 22 35 0 0 chr1 66069597 66069626 -176594727 + AT_rich Low_complexity Low_complexity 1 29 0 523 286 143 0 chr1 66070417 66070578 -176593775 - MIR SINE MIR -70 192 9 243 0 0 0 chr1 66070737 66070764 -176593589 + (ATG)n Simple_repeat Simple_repeat 2 28 0 2081 65 28 58 chr1 66070764 66071075 -176593278 - AluY SINE Alu 0 304 3 2240 120 0 0 chr1 66071183 66071483 -176592870 - AluSg SINE Alu -10 300 1 336 261 109 95 chr1 66071692 66071903 -176592450 + MIR SINE MIR 34 247 -15 222 37 0 0 chr1 66072124 66072151 -176592202 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 192 279 79 114 chr1 66072375 66072515 -176591838 - L2 LINE L2 -219 3053 2919 373 255 39 20 chr1 66072645 66072747 -176591606 - MIR SINE MIR -70 192 89 230 234 0 0 chr1 66072789 66072836 -176591517 + (CAA)n Simple_repeat Simple_repeat 2 48 0 314 231 85 77 chr1 66072847 66072866 -176591487 - MIR SINE MIR -33 229 212 1018 182 61 5 chr1 66072866 66073064 -176591289 - MER3 DNA MER1_type 0 209 1 314 231 85 77 chr1 66073064 66073174 -176591179 - MIR SINE MIR -50 212 99 334 303 45 45 chr1 66073664 66073819 -176590534 + MIR SINE MIR 41 195 -67 285 270 0 0 chr1 66074248 66074311 -176590042 - L2 LINE L2 -9 3263 3201 6122 115 198 91 chr1 66074446 66075978 -176588375 + pTR5 LTR ERV1 743 2438 0 247 291 82 60 chr1 66075980 66076162 -176588191 - L2 LINE L2 -274 2998 2813 754 258 36 5 chr1 66076808 66077002 -176587351 - MIR3 SINE MIR -7 201 2 298 326 150 44 chr1 66077279 66077506 -176586847 + MIR SINE MIR 12 262 0 1627 295 78 18 chr1 66078049 66078764 -176585589 + L2 LINE L2 2394 3149 -164 635 207 47 22 chr1 66078776 66078958 -176585395 - MIR SINE MIR -47 215 27 200 408 77 0 chr1 66078975 66079105 -176585248 + L3 LINE CR1 983 1122 -455 489 285 19 44 chr1 66080463 66080621 -176583732 + MIR SINE MIR 20 173 -89 315 206 0 0 chr1 66080980 66081043 -176583310 + L2 LINE L2 3251 3313 0 469 282 290 6 chr1 66081110 66081458 -176582895 - L2 LINE L2 -974 2340 1894 352 270 172 40 chr1 66081526 66081700 -176582653 - MIR SINE MIR -37 225 29 679 306 102 63 chr1 66081706 66082353 -176582000 - L2 LINE L2 -1497 1817 1146 581 315 53 45 chr1 66082412 66082790 -176581563 + L2 LINE L2 2461 2841 -473 301 314 52 41 chr1 66082863 66083134 -176581219 - MLT1J LTR MaLR -230 281 8 272 197 42 72 chr1 66083445 66083638 -176580715 + Charlie7 DNA MER1_type 2426 2612 0 333 285 127 51 chr1 66083750 66083908 -176580445 - MIR3 SINE MIR -7 201 32 450 169 0 0 chr1 66085041 66085130 -176579223 + (TG)n Simple_repeat Simple_repeat 2 90 0 21 0 0 0 chr1 66085130 66085151 -176579202 + AT_rich Low_complexity Low_complexity 1 21 0 423 291 121 0 chr1 66085156 66085297 -176579056 - MIR SINE MIR -44 218 61 302 181 43 64 chr1 66085357 66085410 -176578943 + MIR3 SINE MIR 102 154 -54 587 238 111 12 chr1 66085410 66085582 -176578771 - MER5A DNA MER1_type 0 189 1 302 181 43 64 chr1 66085582 66085622 -176578731 + MIR3 SINE MIR 154 193 -15 299 313 78 16 chr1 66085788 66085916 -176578437 - L2 LINE L2 0 3272 3137 857 273 24 20 chr1 66086464 66086713 -176577640 - MIR SINE MIR -1 261 12 637 254 130 73 chr1 66087674 66088151 -176576202 + MLT1J LTR MaLR 6 509 -2 673 206 160 27 chr1 66088206 66088425 -176575928 - MIR SINE MIR -5 257 10 209 301 65 45 chr1 66089020 66089219 -176575134 + L2 LINE L2 2851 3053 -219 265 330 97 10 chr1 66089489 66089592 -176574761 + MER91C DNA MER1_type 24 135 -5 388 277 88 31 chr1 66089831 66089990 -176574363 + L2 LINE L2 3112 3279 -34 339 288 83 29 chr1 66090528 66090841 -176573512 - L1ME4a LINE L1 -193 5928 5599 316 244 218 19 chr1 66090848 66091004 -176573349 - L1ME4a LINE L1 0 6121 5935 248 97 65 0 chr1 66091005 66091067 -176573286 + (TA)n Simple_repeat Simple_repeat 1 66 0 496 256 115 0 chr1 66091219 66091410 -176572943 - L1ME4a LINE L1 -374 5747 5535 255 304 18 0 chr1 66091427 66091539 -176572814 - L1ME4a LINE L1 -667 5454 5341 5781 126 25 33 chr1 66091589 66092552 -176571801 - L1MA5A LINE L1 0 6297 5334 1555 177 32 28 chr1 66092552 66092834 -176571519 - AluJo SINE Alu -19 293 11 5781 126 25 33 chr1 66092834 66093084 -176571269 - L1MA5A LINE L1 -963 5334 5084 262 197 56 28 chr1 66093205 66093276 -176571077 + L1MC4 LINE L1 7844 7916 -126 189 213 0 0 chr1 66093286 66093333 -176571020 + (TA)n Simple_repeat Simple_repeat 1 47 0 304 202 67 19 chr1 66093356 66093460 -176570893 + L1MC4a LINE L1 7699 7807 -1 1639 217 62 58 chr1 66093876 66094379 -176569974 - MLT1D LTR MaLR 0 505 1 3919 154 36 6 chr1 66094815 66095543 -176568810 - L1MA7 LINE L1 -1 6290 5541 213 205 0 0 chr1 66095689 66095728 -176568625 - L2 LINE L2 -253 3060 3022 348 288 47 65 chr1 66095781 66095922 -176568431 - L1ME4a LINE L1 -1913 4233 4096 3893 54 0 2 chr1 66095922 66096407 -176567946 + L1PA8 LINE L1 5682 6165 -7 348 288 47 65 chr1 66096407 66096480 -176567873 - L1ME4a LINE L1 -2050 4096 4023 348 88 0 0 chr1 66096487 66096544 -176567809 + (CA)n Simple_repeat Simple_repeat 2 58 0 238 254 119 0 chr1 66096659 66096718 -176567635 + L2 LINE L2 3142 3207 -65 320 273 91 9 chr1 66096720 66096830 -176567523 + L2 LINE L2 3154 3272 0 188 67 33 0 chr1 66097468 66097498 -176566855 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 2607 143 42 2 chr1 66097498 66098043 -176566310 - L1 LINE L1 -1446 4700 4134 1858 289 40 38 chr1 66098503 66099369 -176564984 - HAL1 LINE L1 -1560 947 80 3932 168 9 12 chr1 66099372 66099413 -176564940 + L1MB3 LINE L1 5445 5485 -698 279 0 0 0 chr1 66099413 66099444 -176564909 + (CA)n Simple_repeat Simple_repeat 2 32 0 3932 168 9 12 chr1 66099444 66100142 -176564211 + L1MB3 LINE L1 5485 6182 -1 224 298 85 0 chr1 66100247 66100341 -176564012 - MIR SINE MIR -107 155 54 565 305 83 19 chr1 66100566 66100925 -176563428 - L2 LINE L2 -224 3089 2709 2311 138 47 19 chr1 66101132 66101834 -176562519 - L1P4 LINE L1 -484 5681 4968 3349 167 6 9 chr1 66101887 66102557 -176561796 - L1P LINE L1 -1082 5064 4397 3082 126 0 0 chr1 66102558 66103041 -176561312 + L1PA15 LINE L1 5708 6190 0 365 215 84 0 chr1 66103104 66103211 -176561142 - MER103 DNA DNA -39 127 12 358 319 51 51 chr1 66103250 66103485 -176560868 - L2 LINE L2 -111 3161 2927 2094 90 4 4 chr1 66103626 66103927 -176560426 + AluSx SINE Alu 5 305 0 2187 123 0 0 chr1 66105610 66105902 -176558451 + AluSx SINE Alu 1 292 -20 315 183 87 19 chr1 66105914 66106018 -176558335 - L1ME4a LINE L1 -35 6086 5976 2082 134 26 62 chr1 66106076 66106494 -176557859 - MER57A LTR ERV1 0 403 1 2150 96 6 56 chr1 66106602 66106926 -176557427 - AluSq SINE Alu -5 308 1 285 265 109 27 chr1 66107907 66108225 -176556128 - LTR16A LTR ERVL 0 450 79 298 317 80 55 chr1 66108355 66108667 -176555686 + L2 LINE L2 2561 2880 -434 198 103 0 0 chr1 66109110 66109139 -176555214 + (T)n Simple_repeat Simple_repeat 1 29 0 396 272 19 76 chr1 66109315 66109473 -176554880 + MIR SINE MIR 100 248 -14 1638 153 91 0 chr1 66109669 66110022 -176554331 - Charlie5 DNA MER1_type 0 2618 2234 589 183 17 0 chr1 66110031 66110146 -176554207 - Charlie5 DNA MER1_type -2491 121 5 244 247 26 52 chr1 66110758 66110835 -176553518 - MER91C DNA MER1_type -30 110 36 22 35 0 0 chr1 66111705 66111734 -176552619 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 66111888 66111909 -176552444 + AT_rich Low_complexity Low_complexity 1 21 0 279 283 97 41 chr1 66111992 66112137 -176552216 - L2 LINE L2 0 3313 3161 406 229 13 78 chr1 66112299 66112452 -176551901 - MER112 DNA MER1_type -45 215 73 467 341 51 65 chr1 66112484 66112839 -176551514 + L2 LINE L2 2919 3268 -4 308 281 10 31 chr1 66112985 66113081 -176551272 + L2 LINE L2 3176 3269 -3 2724 82 6 0 chr1 66113631 66113984 -176550369 + THE1A LTR MaLR 1 355 0 561 111 0 0 chr1 66113984 66114065 -176550288 + THE1A-int LTR MaLR 1 81 -1499 * 792 90 0 0 chr1 66114059 66114170 -176550183 + THE1A-int LTR MaLR 1417 1527 -53 * 3078 86 11 2 chr1 66114163 66114605 -176549748 + THE1A-int LTR MaLR 1134 1579 -1 2315 123 20 3 chr1 66114606 66114955 -176549398 + THE1A LTR MaLR 1 355 0 299 236 11 34 chr1 66115369 66115458 -176548895 - L2 LINE L2 -10 3303 3217 226 268 0 0 chr1 66117775 66117816 -176546537 - L2 LINE L2 -22 3250 3210 601 281 60 10 chr1 66117849 66118048 -176546305 + MIR SINE MIR 35 243 -19 184 157 71 100 chr1 66118098 66118168 -176546185 - L2 LINE L2 -201 3071 3004 2225 90 3 3 chr1 66118243 66118531 -176545822 + AluSq SINE Alu 1 288 -25 335 339 16 31 chr1 66118920 66119047 -176545306 - MIR SINE MIR -118 144 20 424 276 126 50 chr1 66119085 66119324 -176545029 + MIR SINE MIR 6 262 0 581 275 70 10 chr1 66120550 66120750 -176543603 + MIR SINE MIR 49 260 -2 349 118 0 0 chr1 66120771 66120822 -176543531 + L1MC3 LINE L1 6509 6559 -1226 4648 63 11 3 chr1 66120822 66121938 -176542415 - MER11A LTR ERVK 0 1266 1 4376 143 117 82 chr1 66121938 66122474 -176541879 + L1MC3 LINE L1 6554 7070 -715 296 256 0 12 chr1 66122474 66122556 -176541797 + MLT1F1 LTR MaLR 45 125 -442 4376 143 117 82 chr1 66122556 66123127 -176541226 + L1MC3 LINE L1 7070 7784 -1 487 286 117 14 chr1 66124125 66124338 -176540015 - MIR SINE MIR -8 254 20 1459 192 177 43 chr1 66124384 66124899 -176539454 + L1ME1 LINE L1 5302 5885 -281 406 177 89 0 chr1 66125079 66125158 -176539195 - L1ME LINE L1 -524 5640 5555 382 266 64 73 chr1 66125188 66125421 -176538932 + L1ME1 LINE L1 5908 6138 -28 * 448 213 107 0 chr1 66125303 66125453 -176538900 + L1MA10 LINE L1 6167 6332 -2 2980 116 0 0 chr1 66125463 66125922 -176538431 - L1P LINE L1 -1835 4311 3853 * 6091 92 10 0 chr1 66125919 66126824 -176537529 + L1P LINE L1 4336 5249 -897 853 185 162 0 chr1 66127080 66127296 -176537057 + L1ME LINE L1 5387 5637 -529 2515 4 0 0 chr1 66128093 66128364 -176535989 - AluYa5 SINE Alu -2 309 39 477 297 125 31 chr1 66128389 66128645 -176535708 + L2 LINE L2 2993 3272 0 2830 114 17 0 chr1 66129308 66129729 -176534624 + MSTA LTR MaLR 1 428 0 280 323 115 0 chr1 66129870 66130000 -176534353 - MIR SINE MIR -72 190 46 411 347 110 5 chr1 66130508 66130727 -176533626 - MIR SINE MIR -1 261 20 1204 173 0 35 chr1 66130737 66130963 -176533390 + MER20 DNA MER1_type 1 218 -1 186 318 48 0 chr1 66131403 66131466 -176532887 + L2 LINE L2 3188 3253 -19 24 67 0 0 chr1 66131471 66131516 -176532837 + AT_rich Low_complexity Low_complexity 1 45 0 445 320 57 49 chr1 66132422 66132618 -176531735 - MIR3 SINE MIR -9 199 1 339 293 154 24 chr1 66132904 66133112 -176531241 - MIR SINE MIR -7 255 21 221 182 0 0 chr1 66133260 66133304 -176531049 - MIR SINE MIR -66 142 99 218 362 16 16 chr1 66133540 66133667 -176530686 - MIR SINE MIR -86 176 50 3368 192 62 10 chr1 66134711 66135581 -176528772 + MER52A LTR ERV1 1 1063 -687 2234 108 3 3 chr1 66135803 66136109 -176528244 + AluSx SINE Alu 1 306 -6 365 225 246 0 chr1 66136631 66136769 -176527584 - MIR SINE MIR -12 250 79 383 292 42 0 chr1 66136904 66137022 -176527331 + MER5A DNA MER1_type 43 165 -24 597 204 88 14 chr1 66137022 66137169 -176527184 - MER5A DNA MER1_type 0 189 32 654 180 0 0 chr1 66137701 66137801 -176526552 - Tigger7 DNA MER2_type -1 2586 2487 1611 202 0 0 chr1 66137810 66138077 -176526276 - Tigger7 DNA MER2_type -466 267 1 189 241 0 0 chr1 66138401 66138455 -176525898 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 197 288 41 0 chr1 66138895 66138968 -176525385 + L2 LINE L2 3236 3311 -2 480 301 107 68 chr1 66139432 66140079 -176524274 + L2 LINE L2 1146 1817 -1497 301 266 107 73 chr1 66140080 66140257 -176524096 + MIR SINE MIR 43 225 -37 333 279 294 6 chr1 66140325 66140672 -176523681 + L2 LINE L2 1894 2340 -974 283 222 0 0 chr1 66140739 66140802 -176523551 - L2 LINE L2 0 3313 3251 26250 38 10 8 chr1 66141634 66145038 -176519315 - L1P2 LINE L1 -592 5562 2153 2053 283 142 29 chr1 66146444 66147957 -176516396 + L2 LINE L2 1606 3308 -5 207 304 63 0 chr1 66149147 66149226 -176515127 + L2 LINE L2 3139 3222 -50 290 285 258 0 chr1 66149298 66149449 -176514904 - MIR SINE MIR -11 251 62 911 155 111 17 chr1 66149641 66149822 -176514531 + AluJo SINE Alu 21 218 -94 19056 53 8 3 chr1 66149976 66152335 -176512018 - L1P LINE L1 -3772 2374 3 471 293 83 8 chr1 66152341 66152594 -176511759 - L1M4 LINE L1 -1780 4366 4095 230 174 0 22 chr1 66153035 66153081 -176511272 + L2 LINE L2 3219 3263 -9 308 294 78 15 chr1 66154297 66154451 -176509902 + MIR SINE MIR 1 164 -44 2249 119 0 3 chr1 66154647 66154958 -176509395 + AluSg SINE Alu 1 310 0 210 257 24 14 chr1 66205891 66205975 -176458378 - MIR SINE MIR -59 149 64 652 242 23 51 chr1 66206874 66207089 -176457264 + MIR SINE MIR 37 245 -17 207 239 22 0 chr1 66207951 66207997 -176456356 + MIR SINE MIR 33 79 -183 350 0 44 0 chr1 66208384 66208429 -176455924 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 185 356 33 0 chr1 66208761 66208851 -176455502 + L2 LINE L2 2437 2529 -785 346 89 0 0 chr1 66209102 66209158 -176455195 - L1PB1 LINE L1 0 6151 6096 1699 158 7 7 chr1 66209158 66209437 -176454916 - AluJb SINE Alu -21 291 13 247 224 0 0 chr1 66210320 66210369 -176453984 + MIR SINE MIR 28 76 -132 250 298 96 23 chr1 66210468 66210686 -176453667 - MIR SINE MIR -5 257 24 2250 108 50 42 chr1 66210871 66211232 -176453121 + THE1B LTR MaLR 1 364 0 11952 95 4 1 chr1 66211232 66212807 -176451546 + THE1B-int LTR MaLR 1 1580 0 648 103 155 0 chr1 66212807 66212904 -176451449 + THE1B LTR MaLR 1 112 -252 255 298 21 11 chr1 66212904 66212998 -176451355 - MIR SINE MIR -78 130 36 242 232 136 40 chr1 66213677 66213802 -176450551 - MIR SINE MIR -43 219 83 290 269 27 107 chr1 66214586 66214735 -176449618 - L2 LINE L2 0 3272 3136 219 170 0 0 chr1 66215007 66215054 -176449299 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 1428 181 101 24 chr1 66215085 66215423 -176448930 - THE1B LTR MaLR 0 364 1 207 264 83 0 chr1 66215782 66215854 -176448499 + MIR SINE MIR 22 99 -109 306 227 52 21 chr1 66216233 66216330 -176448023 + MIR SINE MIR 163 262 0 466 257 126 45 chr1 66216455 66216677 -176447676 - MIR SINE MIR -13 249 10 336 272 80 12 chr1 66217729 66217891 -176446462 - L1MC4a LINE L1 -1925 5883 5711 384 288 110 38 chr1 66218038 66218387 -176445966 - L1MC4a LINE L1 -787 5359 5245 311 273 104 39 chr1 66218828 66218982 -176445371 + MIR SINE MIR 22 185 -77 698 269 94 9 chr1 66219448 66219671 -176444682 + MIR SINE MIR 2 243 -19 304 340 64 0 chr1 66219702 66219843 -176444510 + MIR SINE MIR 56 205 -57 351 255 209 0 chr1 66219971 66220124 -176444229 + MIR SINE MIR 78 262 0 525 296 25 13 chr1 66220390 66220549 -176443804 - MIR SINE MIR -70 192 32 367 300 100 13 chr1 66221165 66221315 -176443038 - MIR3 SINE MIR -15 193 31 278 333 17 8 chr1 66221827 66221947 -176442406 - MIR SINE MIR -94 168 48 1210 123 64 64 chr1 66221970 66222205 -176442148 + MER46A DNA MER2_type 1 235 -1 183 205 0 0 chr1 66222274 66222313 -176442040 + (CA)n Simple_repeat Simple_repeat 1 39 0 1858 163 52 25 chr1 66222323 66222686 -176441667 - THE1C LTR MaLR 0 375 3 315 0 0 0 chr1 66222686 66222721 -176441632 + (CA)n Simple_repeat Simple_repeat 1 35 0 302 88 0 206 chr1 66222930 66222998 -176441355 - MER45A DNA AcHobo 0 178 125 436 271 44 71 chr1 66223312 66223417 -176440936 - MER45C DNA AcHobo -732 221 115 6717 75 11 1 chr1 66223417 66224670 -176439683 + L1PA7 LINE L1 4892 6153 -1 436 271 44 71 chr1 66224670 66224759 -176439594 - MER45C DNA AcHobo -838 115 25 1954 130 98 21 chr1 66224759 66225097 -176439256 - THE1B LTR MaLR 0 364 1 11735 88 25 0 chr1 66225097 66226637 -176437716 - THE1B-int LTR MaLR 0 1580 2 436 271 44 71 chr1 66226637 66226665 -176437688 - MER45C DNA AcHobo -926 27 3 311 240 115 31 chr1 66227280 66227376 -176436977 - MER94 DNA DNA -1 133 30 257 286 0 0 chr1 66227927 66227983 -176436370 + polypurine Low_complexity Low_complexity 5 60 0 303 335 32 32 chr1 66228757 66228915 -176435438 + MIR SINE MIR 13 170 -92 368 239 37 28 chr1 66228927 66229036 -176435317 - MIR SINE MIR -1 261 152 1155 219 0 5 chr1 66229040 66229255 -176435098 + MER58A DNA MER1_type 3 216 -8 324 305 13 65 chr1 66229265 66229419 -176434934 - MIR SINE MIR -112 150 5 217 269 30 30 chr1 66229421 66229488 -176434865 + MIR SINE MIR 194 260 -2 251 170 57 0 chr1 66229621 66229674 -176434679 - MIR SINE MIR -85 177 122 196 322 100 11 chr1 66230261 66230351 -176434002 - MIR SINE MIR -53 209 112 864 257 0 5 chr1 66231077 66231287 -176433066 - MIR SINE MIR -43 219 11 231 300 28 45 chr1 66231312 66231474 -176432879 - MIR3 SINE MIR -67 141 3 758 306 16 4 chr1 66232506 66232764 -176431589 + MIR SINE MIR 1 261 -1 21 0 0 0 chr1 66232768 66232789 -176431564 + AT_rich Low_complexity Low_complexity 1 21 0 212 288 17 0 chr1 66232829 66232888 -176431465 - L2 LINE L2 -2 3270 3211 449 282 21 21 chr1 66232931 66233073 -176431280 - MIR SINE MIR -16 246 105 755 324 31 19 chr1 66234053 66234413 -176429940 + L2 LINE L2 2782 3145 -168 183 80 0 0 chr1 66234530 66234555 -176429798 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 * 254 224 0 26 chr1 66234553 66234629 -176429724 + T-rich Low_complexity Low_complexity 3 76 0 543 202 0 0 chr1 66234646 66234770 -176429583 + C-rich Low_complexity Low_complexity 1 124 0 6657 164 53 64 chr1 66234919 66235744 -176428609 - L1MC3 LINE L1 -167 7618 6785 192 40 0 0 chr1 66235744 66235769 -176428584 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 2293 65 7 4 chr1 66235775 66236053 -176428300 - AluY SINE Alu -32 279 1 6657 164 53 64 chr1 66236053 66236815 -176427538 - L1MC3 LINE L1 -1005 6780 6042 351 187 4 7 chr1 66236820 66236894 -176427459 + Alu SINE Alu 3 56 -244 1324 107 0 0 chr1 66237053 66237231 -176427122 + AluY SINE Alu 119 296 -15 492 239 0 8 chr1 66237232 66237349 -176427004 - L1MC2 LINE L1 -316 6446 6331 4684 248 56 57 chr1 66237349 66239760 -176424593 - L1MC2 LINE L1 -743 5821 3529 3521 141 9 2 chr1 66239771 66240337 -176424016 - L1PA16 LINE L1 -9 6157 5588 1608 159 37 0 chr1 66240348 66240669 -176423684 + L1 LINE L1 4402 4734 -1412 3444 224 82 17 chr1 66240705 66242065 -176422288 - L1MC2 LINE L1 -3917 2828 1557 249 33 0 0 chr1 66242065 66242095 -176422258 + (TTA)n Simple_repeat Simple_repeat 1 30 0 3444 224 82 17 chr1 66242095 66243204 -176421149 - L1MC2 LINE L1 -5188 1557 33 427 314 8 16 chr1 66243291 66243412 -176420941 + L2 LINE L2 3184 3303 -10 182 264 57 19 chr1 66243435 66243488 -176420865 - L2 LINE L2 -21 3292 3238 273 315 76 0 chr1 66244592 66244684 -176419669 + MIR SINE MIR 45 143 -65 563 247 127 62 chr1 66244899 66245174 -176419179 + LTR33 LTR ERVL 104 396 -125 725 241 65 10 chr1 66245458 66245657 -176418696 - MER63A DNA MER1_type 0 210 1 1276 173 76 0 chr1 66245844 66246145 -176418208 + MER33 DNA MER1_type 1 324 0 342 120 13 13 chr1 66246162 66246226 -176418127 + AluJo SINE Alu 1 46 -256 * 2117 97 118 13 chr1 66246222 66246594 -176417759 + MSTA LTR MaLR 7 417 -11 450 223 10 29 chr1 66246594 66246697 -176417656 + AluJo SINE Alu 44 144 -168 2078 93 45 10 chr1 66246697 66246986 -176417367 + AluY SINE Alu 1 299 -12 935 186 6 0 chr1 66246986 66247147 -176417206 + AluJo SINE Alu 137 298 -4 1126 332 166 28 chr1 66247148 66248483 -176415870 + L2 LINE L2 1721 3258 -14 349 351 66 40 chr1 66248499 66248650 -176415703 - MIR3 SINE MIR -42 166 12 570 270 87 66 chr1 66249093 66249259 -176415094 - MIR SINE MIR 0 262 88 2333 86 0 0 chr1 66249259 66249549 -176414804 - AluSx SINE Alu -22 290 1 570 270 87 66 chr1 66249549 66249623 -176414730 - MIR SINE MIR -174 88 17 222 128 0 0 chr1 66249734 66249773 -176414580 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 197 303 126 50 chr1 66249826 66249945 -176414408 - L2 LINE L2 -63 3209 3082 249 247 11 97 chr1 66251480 66251527 -176412826 - MIR SINE MIR -72 190 153 1694 170 10 27 chr1 66251527 66251821 -176412532 - AluJb SINE Alu -23 289 1 249 247 11 97 chr1 66251821 66251866 -176412487 - MIR SINE MIR -109 153 106 211 261 22 0 chr1 66252010 66252056 -176412297 + MIR SINE MIR 216 262 0 594 221 8 8 chr1 66252579 66252706 -176411647 - MIR3 SINE MIR -4 204 78 564 233 145 6 chr1 66252968 66253140 -176411213 + MIR SINE MIR 53 248 -14 559 338 50 53 chr1 66253173 66253700 -176410653 - L2 LINE L2 -52 3261 2740 347 177 16 0 chr1 66253710 66253772 -176410581 + MER21B LTR ERV1 13 75 -788 193 349 15 0 chr1 66253772 66253838 -176410515 - L2 LINE L2 -52 3261 3195 2852 209 32 36 chr1 66253848 66254562 -176409791 + MER21B LTR ERV1 96 806 -57 385 240 128 0 chr1 66254597 66254722 -176409631 - L2 LINE L2 0 3313 3173 * 767 285 53 8 chr1 66254718 66254964 -176409389 - MIR SINE MIR -3 259 3 317 246 238 8 chr1 66255079 66255201 -176409152 - MIR SINE MIR -85 177 28 30 27 0 0 chr1 66255351 66255388 -176408965 + AT_rich Low_complexity Low_complexity 1 37 0 416 202 48 0 chr1 66255430 66255534 -176408819 - L1ME2 LINE L1 -7 6157 6049 200 238 48 95 chr1 66255996 66256080 -176408273 - MIR SINE MIR -163 99 20 516 261 96 30 chr1 66256133 66256332 -176408021 + MIR SINE MIR 33 244 -18 311 213 24 71 chr1 66256390 66256517 -176407836 - Charlie7 DNA MER1_type -15 2597 2477 1047 253 76 84 chr1 66256564 66257265 -176407088 - Charlie7 DNA MER1_type -1912 700 6 306 273 171 0 chr1 66257296 66257384 -176406969 - L2 LINE L2 -14 3258 3156 414 0 0 0 chr1 66258496 66258542 -176405811 + (TA)n Simple_repeat Simple_repeat 2 47 0 375 262 122 18 chr1 66258566 66258730 -176405623 - L1ME4a LINE L1 -13 6108 5928 1862 148 20 26 chr1 66259441 66259746 -176404607 - AluSx SINE Alu -9 303 1 412 333 111 0 chr1 66260315 66260450 -176403903 - L2 LINE L2 -1 3271 3122 302 234 72 124 chr1 66261661 66261870 -176402483 - L2 LINE L2 -36 3277 3080 353 326 98 0 chr1 66261933 66262065 -176402288 + L2 LINE L2 3122 3266 -6 436 339 17 40 chr1 66263088 66263265 -176401088 - MIR3 SINE MIR -23 185 13 408 387 71 43 chr1 66263417 66264126 -176400227 - L2 LINE L2 -8 3264 2538 3023 189 27 18 chr1 66265006 66265757 -176398596 + L1MB3 LINE L1 5176 5930 -253 953 218 71 13 chr1 66266058 66266297 -176398056 - MIR SINE MIR -2 260 8 270 319 0 14 chr1 66267002 66267074 -176397279 + MIR SINE MIR 23 93 -169 1195 92 18 111 chr1 66267095 66267312 -176397041 - AluSg/x SINE Alu -11 301 105 2531 60 0 0 chr1 66267905 66268204 -176396149 - AluY SINE Alu -12 299 1 956 254 117 12 chr1 66268366 66268792 -176395561 + L1MC4a LINE L1 7091 7561 -247 266 260 0 14 chr1 66268842 66268915 -176395438 + (CA)n Simple_repeat Simple_repeat 1 72 0 358 320 72 8 chr1 66269039 66269164 -176395189 - L2 LINE L2 -4 3268 3136 407 201 12 225 chr1 66269297 66269453 -176394900 + MIR SINE MIR 36 121 -141 2511 58 7 3 chr1 66269453 66269763 -176394590 - AluY SINE Alu 0 311 1 407 201 12 225 chr1 66269763 66269855 -176394498 + MIR SINE MIR 121 231 -31 275 270 54 0 chr1 66270350 66270424 -176393929 - MIR SINE MIR -77 185 108 318 297 50 10 chr1 66270426 66270527 -176393826 - MIR SINE MIR -126 136 32 555 284 17 11 chr1 66270792 66270968 -176393385 + MIR SINE MIR 80 256 -6 207 279 117 54 chr1 66271799 66271910 -176392443 + L2 LINE L2 3137 3254 -18 216 0 0 0 chr1 66271941 66271965 -176392388 + (A)n Simple_repeat Simple_repeat 1 24 0 234 333 15 53 chr1 66272998 66273130 -176391223 - MIR SINE MIR -59 203 77 488 301 44 44 chr1 66273358 66273584 -176390769 + MIR SINE MIR 34 259 -3 927 252 44 47 chr1 66274830 66275191 -176389162 + MLT1I LTR MaLR 47 406 -3 317 270 114 72 chr1 66275538 66275731 -176388622 - MLT1L LTR MaLR -135 480 272 255 31 0 0 chr1 66275731 66275763 -176388590 + (TTG)n Simple_repeat Simple_repeat 2 33 0 317 270 114 72 chr1 66275763 66275832 -176388521 - MLT1L LTR MaLR -343 272 207 259 278 14 0 chr1 66275910 66275982 -176388371 - MLT1L LTR MaLR -540 75 3 409 250 79 29 chr1 66276014 66276154 -176388199 + MER103 DNA DNA 5 151 -15 23 54 0 0 chr1 66276560 66276597 -176387756 + AT_rich Low_complexity Low_complexity 1 37 0 521 271 220 5 chr1 66277681 66277895 -176386458 - MIR SINE MIR 0 262 3 409 261 182 0 chr1 66277911 66278076 -176386277 - MIR SINE MIR 0 262 68 940 227 14 18 chr1 66278398 66278618 -176385735 - MER58A DNA MER1_type -5 219 1 568 310 63 10 chr1 66279496 66279799 -176384554 + L1MC4 LINE L1 6704 7022 -1020 678 199 126 13 chr1 66280111 66280262 -176384091 - MER5B DNA MER1_type -4 174 7 353 321 31 67 chr1 66280423 66280616 -176383737 - MIR SINE MIR -69 193 8 816 246 214 2 chr1 66282397 66282823 -176381530 - LTR33A LTR ERVL 0 523 8 545 299 127 0 chr1 66283161 66283358 -176380995 - MIR SINE MIR -40 222 1 2281 198 146 114 chr1 66283413 66283740 -176380613 - L1MD3 LINE L1 0 7995 7680 2342 94 3 0 chr1 66283740 66284038 -176380315 + AluSq SINE Alu 1 299 -14 2281 198 146 114 chr1 66284038 66284281 -176380072 - L1MD3 LINE L1 -315 7680 7446 358 205 36 0 chr1 66284281 66284364 -176379989 - MLT1F1 LTR MaLR -443 124 39 2281 198 146 114 chr1 66284364 66284843 -176379510 - L1MD3 LINE L1 -549 7446 6610 432 381 61 4 chr1 66284958 66285278 -176379075 - L2 LINE L2 -215 3057 2722 183 80 0 0 chr1 66285857 66285882 -176378471 + (A)n Simple_repeat Simple_repeat 1 25 0 219 323 181 16 chr1 66285889 66286016 -176378337 - L3 LINE CR1 -56 1521 1374 416 288 6 80 chr1 66286605 66286768 -176377585 + MIR SINE MIR 47 197 -65 237 286 0 0 chr1 66286817 66286873 -176377480 - L2 LINE L2 0 3272 3217 977 163 6 12 chr1 66287182 66287348 -176377005 - FRAM SINE Alu -18 158 1 292 277 118 17 chr1 66287641 66287760 -176376593 - L2 LINE L2 -1 3312 3182 1846 171 0 3 chr1 66287783 66288082 -176376271 - AluJo SINE Alu -10 302 5 493 286 50 25 chr1 66290050 66290211 -176374142 + MIR SINE MIR 34 198 -64 460 310 7 14 chr1 66290218 66290360 -176373993 + LTR33 LTR ERVL 10 150 -371 1976 129 16 60 chr1 66290441 66290822 -176373531 - THE1B LTR MaLR 0 364 1 10904 97 38 1 chr1 66290822 66292346 -176372007 - THE1B-int LTR MaLR 0 1580 1 1644 149 76 51 chr1 66292346 66292701 -176371652 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr1 66293570 66293593 -176370760 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr1 66293612 66293635 -176370718 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 190 409 61 30 chr1 66294115 66294247 -176370106 - L2 LINE L2 -15 3257 3122 4426 161 33 52 chr1 66294558 66295128 -176369225 - L1MB5 LINE L1 0 6410 5831 2432 111 14 3 chr1 66295128 66295488 -176368865 + THE1B LTR MaLR 1 364 0 4426 161 33 52 chr1 66295488 66295645 -176368708 - L1MB5 LINE L1 -579 5831 5673 288 53 0 0 chr1 66295645 66295683 -176368670 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4426 161 33 52 chr1 66295683 66295961 -176368392 - L1MB5 LINE L1 -737 5673 5420 12886 202 46 24 chr1 66295964 66301261 -176363092 + L1MA5 LINE L1 1439 6871 -491 191 35 0 35 chr1 66301261 66301290 -176363063 + (TA)n Simple_repeat Simple_repeat 2 29 0 12886 202 46 24 chr1 66301290 66301786 -176362567 + L1MA5 LINE L1 6871 7354 -8 10168 226 41 34 chr1 66301793 66302572 -176361781 - L1MB5 LINE L1 -983 5399 4627 2146 139 3 0 chr1 66302572 66302881 -176361472 - AluSx SINE Alu -2 310 1 10168 226 41 34 chr1 66302881 66303046 -176361307 - L1MB5 LINE L1 -1755 4627 4465 2083 189 41 7 chr1 66303046 66303458 -176360895 + MSTB LTR MaLR 1 426 0 10168 226 41 34 chr1 66303458 66305297 -176359056 - L1MB5 LINE L1 -1917 4465 2582 1553 212 10 13 chr1 66305297 66305480 -176358873 - AluJb SINE Alu -10 302 119 1029 139 0 0 chr1 66305480 66305653 -176358700 + (TC)n Simple_repeat Simple_repeat 2 174 0 1553 212 10 13 chr1 66305653 66305771 -176358582 - AluJb SINE Alu -193 119 2 10168 226 41 34 chr1 66305771 66306436 -176357917 - L1MB5 LINE L1 -3800 2582 1923 270 300 0 0 chr1 66306464 66306554 -176357799 + T-rich Low_complexity Low_complexity 1 90 0 567 170 0 18 chr1 66306585 66306697 -176357656 - L1PA11 LINE L1 -1446 4700 4591 * 6418 108 23 10 chr1 66306695 66307202 -176357151 + L1PA11 LINE L1 4717 5216 -958 294 29 0 0 chr1 66307202 66307237 -176357116 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 6418 108 23 10 chr1 66307237 66308134 -176356219 + L1PA11 LINE L1 5216 6150 -24 324 144 96 48 chr1 66308444 66308555 -176355798 - MIR SINE MIR -68 140 41 2273 255 115 39 chr1 66309372 66310119 -176354234 + L1MC4 LINE L1 6777 7626 -416 453 36 0 0 chr1 66310119 66310174 -176354179 + (CA)n Simple_repeat Simple_repeat 1 55 0 2273 255 115 39 chr1 66310174 66310463 -176353890 + L1MC4 LINE L1 7626 7892 -150 593 276 83 6 chr1 66310975 66311156 -176353197 + MIR SINE MIR 68 262 0 2337 57 13 27 chr1 66311220 66311520 -176352833 - AluSc SINE Alu -13 296 1 2086 96 4 0 chr1 66311527 66311799 -176352554 - AluSp SINE Alu -12 301 29 37 23 0 0 chr1 66312474 66312518 -176351835 + AT_rich Low_complexity Low_complexity 1 44 0 1576 190 17 3 chr1 66312543 66312838 -176351515 + AluJo SINE Alu 1 299 -13 1442 260 66 13 chr1 66313753 66314130 -176350223 + LTR16A LTR ERVL 54 450 0 184 200 31 0 chr1 66315141 66315206 -176349147 + CT-rich Low_complexity Low_complexity 2 68 0 308 277 85 0 chr1 66315835 66315929 -176348424 - MIR SINE MIR 0 262 161 239 289 33 33 chr1 66316400 66316490 -176347863 - MIR SINE MIR -105 157 68 210 310 0 28 chr1 66316553 66316624 -176347729 + (CATG)n Simple_repeat Simple_repeat 3 71 0 312 195 81 73 chr1 66316700 66316823 -176347530 - L1ME4a LINE L1 -31 6090 5967 215 266 13 25 chr1 66316847 66316926 -176347427 + (CATA)n Simple_repeat Simple_repeat 2 79 0 734 128 0 26 chr1 66316952 66317069 -176347284 - FLAM_C SINE Alu -19 114 1 977 218 129 28 chr1 66317086 66317550 -176346803 - L1ME4a LINE L1 -200 5921 5411 266 272 144 12 chr1 66317558 66317815 -176346538 - L1ME4a LINE L1 -1 6120 5830 2151 111 0 16 chr1 66319070 66319385 -176344968 - AluSx SINE Alu -2 310 1 34 0 0 0 chr1 66319749 66319783 -176344570 + GC_rich Low_complexity Low_complexity 1 34 0 304 274 132 89 chr1 66319795 66320303 -176344050 - L1M2 LINE L1 -5539 1310 781 263 372 103 14 chr1 66322066 66322348 -176342005 + L2 LINE L2 1557 1863 -1451 21 36 0 0 chr1 66322512 66322540 -176341813 + AT_rich Low_complexity Low_complexity 1 28 0 294 295 83 83 chr1 66322566 66322868 -176341485 + L2 LINE L2 2831 3132 -181 314 299 87 0 chr1 66322948 66323075 -176341278 - L1M4 LINE L1 -2005 4141 4004 327 323 63 8 chr1 66323597 66323724 -176340629 + MIR3 SINE MIR 64 197 -11 2473 90 0 0 chr1 66324167 66324478 -176339875 - AluSx SINE Alu -1 311 1 290 338 45 23 chr1 66325264 66325397 -176338956 - MIR SINE MIR -8 254 119 275 325 56 101 chr1 66325430 66325897 -176338456 + L2 LINE L2 2812 3257 -15 24 32 0 0 chr1 66327392 66327423 -176336930 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr1 66327683 66327706 -176336647 + AT_rich Low_complexity Low_complexity 1 23 0 2446 72 0 0 chr1 66328067 66328374 -176335979 + AluY SINE Alu 1 307 -4 2323 95 0 0 chr1 66329239 66329534 -176334819 - AluSg SINE Alu -15 295 1 1187 251 127 10 chr1 66329891 66330302 -176334051 - MLT1C LTR MaLR 0 467 9 391 380 55 13 chr1 66330518 66330755 -176333598 - MIR SINE MIR -1 261 15 2056 131 34 113 chr1 66331699 66331792 -176332561 - MLT2D LTR ERVL -5 409 310 2131 113 3 7 chr1 66331792 66332092 -176332261 - AluSp SINE Alu -14 299 1 2056 131 34 113 chr1 66332092 66332442 -176331911 - MLT2D LTR ERVL -104 310 1 252 329 41 62 chr1 66332825 66332971 -176331382 + MIR3 SINE MIR 59 201 -7 396 275 93 72 chr1 66333355 66333548 -176330805 + MIR SINE MIR 63 259 -3 1825 245 48 9 chr1 66333977 66334516 -176329837 - L1ME1 LINE L1 -41 6194 5635 * 2220 243 122 31 chr1 66334507 66335683 -176328670 - L1ME1 LINE L1 -2692 3523 2241 1540 310 46 44 chr1 66335674 66335915 -176328438 - L1ME1 LINE L1 -5371 1025 786 * 1993 101 4 11 chr1 66335915 66336191 -176328162 - AluSq SINE Alu -1 312 39 1540 310 46 44 chr1 66336191 66336911 -176327442 - L1ME1 LINE L1 -5610 786 62 209 357 24 12 chr1 66338654 66338738 -176325615 + MIR3 SINE MIR 12 96 -112 240 378 17 8 chr1 66339439 66339558 -176324795 + MIR SINE MIR 21 140 -68 416 225 193 16 chr1 66339740 66339927 -176324426 - L1M4 LINE L1 -2847 3299 3080 25 51 0 0 chr1 66339986 66340025 -176324328 + AT_rich Low_complexity Low_complexity 1 39 0 1805 127 89 25 chr1 66340680 66340996 -176323357 - MER1B DNA MER1_type 0 337 2 21 0 0 0 chr1 66341875 66341896 -176322457 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 66342259 66342289 -176322064 + AT_rich Low_complexity Low_complexity 1 30 0 12377 77 6 2 chr1 66342724 66345192 -176319161 - L1PA7 LINE L1 0 6154 3679 268 269 46 19 chr1 66345680 66345788 -176318565 + MIR SINE MIR 119 229 -33 754 297 63 0 chr1 66345940 66346162 -176318191 + MIR SINE MIR 6 241 -21 239 299 39 0 chr1 66346447 66346524 -176317829 - MIR SINE MIR -93 115 36 182 319 0 0 chr1 66348347 66348394 -176315959 - MIR SINE MIR -125 83 37 182 288 86 93 chr1 66348695 66348834 -176315519 - L2 LINE L2 -10 3262 3125 1006 181 24 44 chr1 66349152 66349401 -176314952 - L1MC4 LINE L1 -5 8037 7794 1229 234 108 28 chr1 66349416 66349962 -176314391 - L1M4 LINE L1 -1281 4865 4276 1435 212 87 6 chr1 66350037 66350358 -176313995 - MLT1A1 LTR MaLR -3 362 16 1836 259 60 69 chr1 66350450 66351525 -176312828 - L1M4 LINE L1 -2047 4099 3035 745 71 27 0 chr1 66351528 66351640 -176312713 + (TTCC)n Simple_repeat Simple_repeat 4 118 0 884 257 50 15 chr1 66351653 66351991 -176312362 - L1M4 LINE L1 -3104 3042 2693 21 0 0 0 chr1 66352457 66352478 -176311875 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr1 66352722 66352758 -176311595 + AT_rich Low_complexity Low_complexity 1 36 0 9836 233 65 33 chr1 66354504 66355694 -176308659 - L1MB7 LINE L1 -14 6668 5518 1429 169 14 11 chr1 66355694 66355973 -176308380 + L1MC2 LINE L1 6055 6334 -10 9836 233 65 33 chr1 66355973 66359030 -176305323 - L1MB7 LINE L1 -1164 5518 2561 342 0 0 0 chr1 66359030 66359068 -176305285 + (TA)n Simple_repeat Simple_repeat 2 39 0 2395 100 0 0 chr1 66359068 66359378 -176304975 - AluSg SINE Alu 0 310 1 9836 233 65 33 chr1 66359378 66359874 -176304479 - L1MB7 LINE L1 -4120 2562 1744 487 188 56 62 chr1 66359869 66360013 -176304340 + L1M4 LINE L1 1000 1142 -5400 * 355 229 28 9 chr1 66360026 66360135 -176304218 + L1M4 LINE L1 1114 1224 -5322 3172 114 9 0 chr1 66360173 66360636 -176303717 - L1PA14 LINE L1 -13 6148 5682 260 213 113 12 chr1 66360687 66360767 -176303586 - L1MB7 LINE L1 -4976 1566 1479 1352 155 37 55 chr1 66360801 66360971 -176303382 - AluJb SINE Alu -12 300 135 274 23 47 0 chr1 66360971 66361014 -176303339 + (TA)n Simple_repeat Simple_repeat 2 46 0 1352 155 37 55 chr1 66361014 66361114 -176303239 - AluJb SINE Alu -177 135 35 720 211 7 0 chr1 66361131 66361273 -176303080 - FLAM_C SINE Alu 0 143 1 4204 223 72 41 chr1 66361273 66362571 -176301782 - L1MB7 LINE L1 -5177 1365 27 498 339 37 18 chr1 66362974 66363192 -176301161 - MIR SINE MIR -21 241 20 1021 156 23 0 chr1 66363572 66363745 -176300608 + AluJo SINE Alu 86 262 -50 370 207 0 27 chr1 66363756 66363867 -176300486 + GA-rich Low_complexity Low_complexity 3 110 0 189 107 0 0 chr1 66363930 66363958 -176300395 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 27 0 0 0 chr1 66364099 66364126 -176300227 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr1 66364649 66364692 -176299661 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 66365174 66365195 -176299158 + AT_rich Low_complexity Low_complexity 1 21 0 1737 165 0 51 chr1 66365614 66365792 -176298561 - AluSx SINE Alu -13 299 142 2266 103 0 13 chr1 66365792 66366104 -176298249 - AluSg SINE Alu -2 308 1 1737 165 0 51 chr1 66366104 66366240 -176298113 - AluSx SINE Alu -170 142 1 261 273 165 33 chr1 66366332 66366453 -176297900 + MIR SINE MIR 3 139 -123 610 261 43 56 chr1 66366532 66366766 -176297587 - MIR SINE MIR -25 237 7 21 0 0 0 chr1 66367371 66367392 -176296961 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 66369210 66369245 -176295108 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr1 66369282 66369326 -176295027 + AT_rich Low_complexity Low_complexity 1 44 0 200 283 0 0 chr1 66369417 66369477 -176294876 + T-rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr1 66369533 66369558 -176294795 + AT_rich Low_complexity Low_complexity 1 25 0 374 217 83 17 chr1 66370045 66370165 -176294188 - MIR SINE MIR -74 188 61 28 0 0 0 chr1 66370799 66370827 -176293526 + AT_rich Low_complexity Low_complexity 1 28 0 648 300 107 11 chr1 66371477 66371747 -176292606 - MLT1J1 LTR MaLR -56 390 95 577 293 22 44 chr1 66371780 66372053 -176292300 - L1ME LINE L1 -306 5815 5549 350 304 59 15 chr1 66372310 66372445 -176291908 + L2 LINE L2 3172 3312 -1 32 26 0 0 chr1 66372527 66372566 -176291787 + AT_rich Low_complexity Low_complexity 1 39 0 2187 122 0 0 chr1 66374217 66374520 -176289833 - AluSx SINE Alu -9 303 1 319 320 96 8 chr1 66375031 66375156 -176289197 + MIR3 SINE MIR 38 173 -35 240 181 181 87 chr1 66376179 66376306 -176288047 + MER112 DNA MER1_type 11 149 -111 236 232 37 61 chr1 66377099 66377181 -176287172 - L2 LINE L2 0 3313 3234 820 200 77 0 chr1 66377303 66377473 -176286880 - MER5A DNA MER1_type -2 187 5 21 0 0 0 chr1 66377587 66377608 -176286745 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 66377786 66377815 -176286538 + AT_rich Low_complexity Low_complexity 1 29 0 205 146 49 0 chr1 66377994 66378035 -176286318 + A-rich Low_complexity Low_complexity 3 45 0 351 0 0 0 chr1 66378749 66378788 -176285565 + (TA)n Simple_repeat Simple_repeat 2 40 0 1043 159 90 0 chr1 66379106 66379295 -176285058 - MER3 DNA MER1_type -1 208 3 1125 181 9 59 chr1 66379515 66379736 -176284617 - MER58A DNA MER1_type 0 224 15 2012 122 7 0 chr1 66381639 66381927 -176282426 + AluSx SINE Alu 1 290 -22 421 218 14 109 chr1 66381954 66382101 -176282252 + MLT1J LTR MaLR 7 139 -372 5968 235 56 22 chr1 66382174 66383855 -176280498 - L1M4 LINE L1 -4799 1845 15 458 321 179 35 chr1 66384058 66384404 -176279949 - L2 LINE L2 -9 3263 2868 1150 87 13 135 chr1 66384509 66384739 -176279614 + MER30 DNA MER1_type 1 202 -28 772 291 125 10 chr1 66385065 66385361 -176278992 - MLT1I LTR MaLR 0 409 80 330 257 71 57 chr1 66385457 66385597 -176278756 - MIR SINE MIR -100 162 21 370 276 86 0 chr1 66386186 66386291 -176278062 - L2 LINE L2 -1 3312 3199 1123 259 112 46 chr1 66386292 66386794 -176277559 - MLT1H LTR MaLR 0 549 15 566 337 93 36 chr1 66386831 66387293 -176277060 + L1MEc LINE L1 22 512 -5884 6633 53 5 0 chr1 66387333 66388202 -176276151 - L1PA8 LINE L1 -4 6168 5296 2224 88 0 0 chr1 66388201 66388531 -176275822 + L1PA8 LINE L1 4967 5296 -850 * 968 292 96 39 chr1 66388640 66389610 -176274743 + L1MEc LINE L1 630 1654 -4742 267 213 266 21 chr1 66389901 66389995 -176274358 + L2 LINE L2 3148 3264 -8 973 222 119 33 chr1 66390785 66391181 -176273172 + MER31B LTR ERV1 37 543 0 6088 87 7 24 chr1 66391783 66392766 -176271587 + MER11C LTR ERVK 1 1057 -14 203 224 134 15 chr1 66393089 66393156 -176271197 - MIR SINE MIR -119 143 69 2215 134 36 17 chr1 66393398 66393755 -176270598 - THE1B LTR MaLR 0 364 1 11519 99 14 0 chr1 66393755 66395314 -176269039 - THE1B-int LTR MaLR 0 1580 1 2220 139 31 19 chr1 66395314 66395674 -176268679 - THE1B LTR MaLR 0 364 1 353 244 52 52 chr1 66396321 66396436 -176267917 - MIR3 SINE MIR -6 202 88 1630 221 18 28 chr1 66396892 66397290 -176267063 + MSTD LTR MaLR 3 396 0 1842 132 64 10 chr1 66397501 66397797 -176266556 + AluSx SINE Alu 1 312 0 214 336 25 37 chr1 66398385 66398576 -176265777 - MIR3 SINE MIR -71 191 6 234 341 11 0 chr1 66399538 66399629 -176264724 + MIR SINE MIR 33 124 -138 21 0 0 0 chr1 66399723 66399744 -176264609 + AT_rich Low_complexity Low_complexity 1 21 0 279 177 16 0 chr1 66399947 66400009 -176264344 - L1MD3 LINE L1 -6 7989 7927 3353 206 113 86 chr1 66400018 66400668 -176263685 - L1MC4 LINE L1 -147 7895 7264 1152 8 0 0 chr1 66400668 66400799 -176263554 - L1PA3 LINE L1 0 6155 6025 3353 206 113 86 chr1 66400799 66401544 -176262809 - L1MC4 LINE L1 -778 7264 6463 333 321 29 44 chr1 66401757 66401894 -176262459 - L1ME4a LINE L1 -18 6103 5969 217 364 20 10 chr1 66402300 66402399 -176261954 + MIR SINE MIR 38 137 -71 228 350 147 13 chr1 66402523 66402680 -176261673 + MIR3 SINE MIR 30 207 -1 1190 259 14 32 chr1 66403120 66403468 -176260885 + MLT1H LTR MaLR 19 360 -189 381 242 24 20 chr1 66403475 66403605 -176260748 + MLT1H LTR MaLR 431 549 0 184 252 34 102 chr1 66403714 66403861 -176260492 + MIR SINE MIR 61 197 -65 260 289 75 50 chr1 66404630 66404789 -176259564 + MIR SINE MIR 11 173 -89 389 194 60 127 chr1 66404790 66404924 -176259429 + L2 LINE L2 3189 3313 0 28 61 0 0 chr1 66405107 66405156 -176259197 + AT_rich Low_complexity Low_complexity 1 49 0 2202 92 3 26 chr1 66405363 66405669 -176258684 + AluSq SINE Alu 1 299 -14 445 313 110 35 chr1 66406645 66407225 -176257128 + L2 LINE L2 2420 3054 -218 2115 105 25 0 chr1 66407447 66407732 -176256621 - AluSx SINE Alu -20 292 1 586 347 58 0 chr1 66407732 66407974 -176256379 - MIR SINE MIR -3 259 4 268 303 120 66 chr1 66408246 66408436 -176255917 + L3 LINE CR1 1085 1296 -281 1608 147 37 0 chr1 66408436 66408708 -176255645 + L1PA16 LINE L1 5885 6166 0 268 303 120 66 chr1 66408708 66408791 -176255562 + L3 LINE CR1 1296 1373 -204 201 303 82 74 chr1 66408803 66408925 -176255428 + MIR SINE MIR 21 143 -65 1391 75 0 23 chr1 66409117 66409291 -176255062 + AluSc SINE Alu 9 178 -131 22 56 0 0 chr1 66409313 66409349 -176255004 + AT_rich Low_complexity Low_complexity 1 36 0 190 387 42 0 chr1 66409351 66409470 -176254883 + L3 LINE CR1 1443 1566 -11 276 175 0 0 chr1 66409603 66409660 -176254693 - MER103 DNA DNA -55 111 55 1203 189 60 20 chr1 66410321 66410569 -176253784 - MLT1A1 LTR MaLR -107 258 1 291 329 103 7 chr1 66410616 66410771 -176253582 + MIR SINE MIR 28 197 -65 707 258 100 67 chr1 66410863 66410939 -176253414 + MLT1J LTR MaLR 30 102 -409 2228 47 0 0 chr1 66410939 66411196 -176253157 + AluY SINE Alu 16 272 -39 707 258 100 67 chr1 66411196 66411460 -176252893 + MLT1J LTR MaLR 102 381 -130 1322 152 103 0 chr1 66411531 66411794 -176252559 - L1MB2 LINE L1 -13 6158 5869 410 241 90 0 chr1 66411871 66412004 -176252349 + MER112 DNA MER1_type 106 250 -10 512 279 49 27 chr1 66413208 66413391 -176250962 + MIR SINE MIR 7 193 -69 230 327 209 14 chr1 66413462 66413682 -176250671 - L3 LINE CR1 -323 1254 992 2127 220 20 29 chr1 66414242 66414752 -176249601 + MLT1D LTR MaLR 1 505 0 376 211 102 34 chr1 66415062 66415209 -176249144 + L2 LINE L2 2421 2577 -737 645 194 94 70 chr1 66415235 66415564 -176248789 + L1MC5 LINE L1 7609 7945 -16 650 214 109 0 chr1 66416029 66416272 -176248081 + L1ME2 LINE L1 5635 5903 -261 323 273 109 73 chr1 66417032 66417142 -176247211 + L2 LINE L2 3200 3313 0 671 280 15 58 chr1 66417481 66417742 -176246611 - MIR SINE MIR -1 261 12 261 333 104 21 chr1 66417832 66417976 -176246377 - L2 LINE L2 -216 3056 2901 1007 311 115 54 chr1 66418111 66419073 -176245280 + L2 LINE L2 1940 2960 -354 287 317 24 49 chr1 66419199 66419322 -176245031 + L2 LINE L2 3177 3296 -17 3709 192 26 78 chr1 66419364 66420386 -176243967 + LTR5 LTR ERVK 1 969 0 327 121 0 0 chr1 66421216 66421274 -176243079 + (TG)n Simple_repeat Simple_repeat 2 59 0 185 305 63 42 chr1 66421375 66421470 -176242883 - L2 LINE L2 0 3272 3176 1800 180 3 0 chr1 66421471 66421754 -176242599 + AluJo SINE Alu 1 284 -28 271 280 127 20 chr1 66422052 66422202 -176242151 + MIR SINE MIR 27 192 -70 333 256 140 6 chr1 66422372 66422536 -176241817 - MIR SINE MIR -37 225 40 206 284 0 0 chr1 66422596 66422663 -176241690 + GA-rich Low_complexity Low_complexity 2 68 0 199 289 19 19 chr1 66423101 66423153 -176241200 - MIR SINE MIR -181 81 30 228 281 0 0 chr1 66424079 66424136 -176240217 - L1ME LINE L1 -555 5566 5510 189 293 18 92 chr1 66424868 66425032 -176239321 - L2 LINE L2 0 3272 3121 196 290 90 40 chr1 66425260 66425360 -176238993 - L2 LINE L2 -302 2970 2866 295 243 162 18 chr1 66425367 66425478 -176238875 - L2 LINE L2 -18 3295 3169 390 316 48 6 chr1 66425730 66425898 -176238455 + MIR SINE MIR 13 187 -75 24 0 0 0 chr1 66425907 66425931 -176238422 + AT_rich Low_complexity Low_complexity 1 24 0 292 271 0 0 chr1 66426138 66426197 -176238156 + L2 LINE L2 3213 3271 -1 5693 180 38 2 chr1 66426269 66427135 -176237218 + MER11D LTR ERVK 1 897 0 212 368 39 39 chr1 66427143 66427298 -176237055 + MIR SINE MIR 37 191 -71 323 266 0 0 chr1 66427498 66427562 -176236791 + MIR SINE MIR 52 115 -93 453 232 52 65 chr1 66427661 66427816 -176236537 + L1MDa LINE L1 259 411 -6129 4612 223 59 32 chr1 66428191 66430525 -176233828 + L1MDa LINE L1 907 3279 -3261 200 125 0 83 chr1 66431755 66431803 -176232550 + (CCCCG)n Simple_repeat Simple_repeat 1 44 0 396 308 89 0 chr1 66432012 66432158 -176232195 - MIR SINE MIR -3 259 101 228 217 33 33 chr1 66432257 66432317 -176232036 + L2 LINE L2 3251 3310 -3 1914 123 50 0 chr1 66432528 66432805 -176231548 - AluSx SINE Alu -7 305 15 319 321 36 0 chr1 66432984 66433121 -176231232 - L1ME3A LINE L1 -294 5876 5735 1880 257 80 24 chr1 66433173 66433713 -176230640 + L1MCa LINE L1 11 580 -6279 3860 207 45 18 chr1 66433724 66435084 -176229269 + L1M4b LINE L1 799 2177 -4782 2006 227 18 2 chr1 66435107 66435629 -176228724 - L1M3 LINE L1 -424 5747 5216 324 279 79 54 chr1 66435631 66435871 -176228482 + L1M4b LINE L1 2171 2416 -4543 1357 217 26 89 chr1 66435922 66436337 -176228016 + L1MCa LINE L1 547 935 -6022 22 0 0 0 chr1 66437024 66437046 -176227307 + AT_rich Low_complexity Low_complexity 1 22 0 2668 172 99 8 chr1 66437448 66437638 -176226715 + L1MCa LINE L1 2268 2439 -4518 1814 158 0 0 chr1 66437638 66437911 -176226442 - AluSx SINE Alu -3 309 37 2668 172 99 8 chr1 66437911 66438411 -176225942 + L1MCa LINE L1 2439 3021 -3936 1089 116 5 58 chr1 66438408 66438597 -176225756 - L1 LINE L1 -1779 4367 4189 * 5577 189 34 10 chr1 66438606 66439936 -176224417 + L1MA9 LINE L1 4416 5809 -503 492 18 0 0 chr1 66439936 66439993 -176224360 + (TA)n Simple_repeat Simple_repeat 1 57 0 5577 189 34 10 chr1 66439993 66440509 -176223844 + L1MA9 LINE L1 5809 6311 -1 467 239 22 15 chr1 66440554 66440688 -176223665 + L1M4 LINE L1 4425 4559 -1587 1837 137 35 11 chr1 66440722 66441007 -176223346 - AluSq SINE Alu -21 292 1 396 341 37 29 chr1 66441037 66441283 -176223070 - MIR SINE MIR -10 252 5 674 314 52 56 chr1 66441911 66442408 -176221945 - MLT1J LTR MaLR -2 509 15 11527 155 23 12 chr1 66442469 66443098 -176221255 - L1M1 LINE L1 -4895 2670 2050 3852 200 20 58 chr1 66443098 66444105 -176220248 - LTR5 LTR ERVK 0 969 1 11527 155 23 12 chr1 66444105 66445364 -176218989 - L1M1 LINE L1 -5515 2050 761 386 61 0 0 chr1 66445412 66445461 -176218892 + MADE1 DNA Mariner 32 80 0 3066 144 15 61 chr1 66445461 66446053 -176218300 + L1MA4A LINE L1 5555 6119 -184 5091 145 100 2 chr1 66446149 66447043 -176217310 + Tigger3b DNA MER2_type 1 981 -250 511 243 104 159 chr1 66447044 66448286 -176216067 - L2 LINE L2 -106 3207 2041 556 294 70 0 chr1 66448689 66448903 -176215450 - L2 LINE L2 -1303 2011 1783 398 330 143 13 chr1 66449083 66449164 -176215189 - L1MC/D LINE L1 -2047 5761 5692 1944 161 0 0 chr1 66449164 66449462 -176214891 - AluJb SINE Alu -14 298 1 398 330 143 13 chr1 66449462 66449695 -176214658 - L1MC/D LINE L1 -2116 5692 5406 510 70 0 0 chr1 66450347 66450418 -176213935 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 1674 297 77 10 chr1 66450671 66451557 -176212796 + L2 LINE L2 2368 3312 -1 259 305 70 55 chr1 66451928 66452056 -176212297 - MIR3 SINE MIR -73 135 6 310 347 114 0 chr1 66453116 66453283 -176211070 + L2 LINE L2 2574 2759 -555 678 232 158 31 chr1 66453292 66453488 -176210865 - Charlie7 DNA MER1_type -1 2611 2441 432 31 250 0 chr1 66453488 66453552 -176210801 - MADE1 DNA Mariner 0 80 1 678 232 158 31 chr1 66453552 66453709 -176210644 - Charlie7 DNA MER1_type -171 2441 2213 1117 172 0 0 chr1 66453822 66453991 -176210362 + FAM SINE Alu 1 169 -6 377 65 0 0 chr1 66454655 66454701 -176209652 - LTR1 LTR ERV1 -337 448 403 278 238 20 69 chr1 66455072 66455173 -176209180 + MLT2E LTR ERVL 32 127 -501 1097 241 88 50 chr1 66455550 66456053 -176208300 - MLT1H LTR MaLR -27 522 1 491 303 15 8 chr1 66456055 66456187 -176208166 - MIR SINE MIR -128 134 2 311 206 49 78 chr1 66457678 66457780 -176206573 - L2 LINE L2 -5 3308 3210 690 293 68 96 chr1 66458222 66458435 -176205918 - L2 LINE L2 -2 3311 3094 267 103 0 0 chr1 66458435 66458474 -176205879 + (TG)n Simple_repeat Simple_repeat 1 39 0 690 293 68 96 chr1 66458474 66458871 -176205482 - L2 LINE L2 -219 3094 2723 681 258 172 39 chr1 66458871 66459232 -176205121 + MLT1I LTR MaLR 1 409 0 690 293 68 96 chr1 66459232 66459271 -176205082 - L2 LINE L2 -590 2723 2684 517 292 51 73 chr1 66459411 66459792 -176204561 + L1MC4 LINE L1 6217 6605 -1203 1758 168 11 3 chr1 66459792 66460077 -176204276 + AluJb SINE Alu 1 287 -25 326 42 21 0 chr1 66460080 66460128 -176204225 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 517 292 51 73 chr1 66460128 66460223 -176204130 + L1MC4 LINE L1 6509 6605 -1203 1494 258 52 40 chr1 66460227 66460809 -176203544 + L1MC4 LINE L1 7048 7636 -406 243 88 0 0 chr1 66460837 66460871 -176203482 + (TG)n Simple_repeat Simple_repeat 2 35 0 280 106 0 21 chr1 66460871 66460918 -176203435 - L1MC4 LINE L1 -140 7902 7857 221 312 0 13 chr1 66460955 66461032 -176203321 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 388 237 0 51 chr1 66461089 66461207 -176203146 + L1MC4 LINE L1 7931 8042 0 564 238 188 29 chr1 66461687 66461927 -176202426 + MLT1G LTR MaLR 11 288 -302 544 176 92 72 chr1 66461980 66462133 -176202220 + MLT1G LTR MaLR 407 562 -5 228 281 73 37 chr1 66462143 66462307 -176202046 + HAL1 LINE L1 161 330 -2177 351 340 20 39 chr1 66462343 66462496 -176201857 + HAL1 LINE L1 405 554 -1953 376 35 35 0 chr1 66462611 66462669 -176201684 + (CA)n Simple_repeat Simple_repeat 1 60 0 438 264 79 57 chr1 66462670 66462897 -176201456 + HAL1 LINE L1 1318 1549 -958 1251 297 145 36 chr1 66463081 66463935 -176200418 + L2 LINE L2 88 1034 -2280 524 336 112 0 chr1 66463946 66464223 -176200130 + L2 LINE L2 1482 1789 -1525 1631 110 0 0 chr1 66464269 66464497 -176199856 + L1PB1 LINE L1 5564 5791 -360 238 115 39 19 chr1 66464499 66464551 -176199802 + (TATG)n Simple_repeat Simple_repeat 4 56 0 228 132 19 57 chr1 66464551 66464604 -176199749 + L1MC4 LINE L1 6652 6702 -1340 2907 91 0 0 chr1 66464626 66464989 -176199364 + L1PB1 LINE L1 5784 6146 -5 1162 317 21 6 chr1 66465024 66465355 -176198998 - LTR16C LTR ERVL 0 491 156 278 258 43 11 chr1 66465414 66465507 -176198846 + L2 LINE L2 3214 3309 -4 1739 120 12 12 chr1 66465542 66465800 -176198553 + AluSx SINE Alu 44 301 -11 4078 180 55 26 chr1 66465803 66467094 -176197259 + L1MB7 LINE L1 4858 6184 0 682 290 91 47 chr1 66467095 66467622 -176196731 + HAL1 LINE L1 1618 2167 -340 212 294 0 15 chr1 66467631 66467699 -176196654 - MIR SINE MIR -100 108 42 292 120 0 256 chr1 66467992 66468109 -176196244 - L1MB8 LINE L1 0 6178 6092 2444 179 47 18 chr1 66468113 66468620 -176195733 - L1MB4 LINE L1 0 6180 5659 261 368 77 8 chr1 66468637 66468754 -176195599 + MIR SINE MIR 16 140 -68 27 0 0 0 chr1 66468860 66468887 -176195466 + AT_rich Low_complexity Low_complexity 1 27 0 805 298 108 49 chr1 66469076 66469569 -176194784 - LTR67 LTR ERVL -34 523 2 1865 273 66 24 chr1 66469682 66470349 -176194004 - L2 LINE L2 -502 2812 2118 2121 136 0 0 chr1 66470596 66470891 -176193462 - AluSx SINE Alu -17 295 1 479 281 132 31 chr1 66471268 66471496 -176192857 - MIR SINE MIR -11 251 1 22 35 0 0 chr1 66472745 66472774 -176191579 + AT_rich Low_complexity Low_complexity 1 29 0 5321 117 266 76 chr1 66473744 66475171 -176189182 - pTR5 LTR ERV1 0 2438 741 1666 92 100 20 chr1 66475452 66475728 -176188625 + AluSx SINE Alu 29 312 0 248 189 19 0 chr1 66475865 66475918 -176188435 - MIR SINE MIR -89 119 66 353 317 84 26 chr1 66476682 66476909 -176187444 + L3 LINE CR1 1085 1324 -253 26 0 0 0 chr1 66476911 66476937 -176187416 + AT_rich Low_complexity Low_complexity 1 26 0 361 352 65 9 chr1 66477023 66477253 -176187100 - MIR SINE MIR -18 244 2 481 347 48 35 chr1 66477805 66478196 -176186157 + L2 LINE L2 2782 3183 -89 579 290 21 16 chr1 66478619 66478812 -176185541 + MIR SINE MIR 69 262 0 232 196 36 0 chr1 66478944 66479000 -176185353 + MIR SINE MIR 94 151 -111 189 0 0 0 chr1 66479281 66479302 -176185051 + (TC)n Simple_repeat Simple_repeat 2 22 0 1819 199 3 0 chr1 66479677 66479994 -176184359 - 7SLRNA srpRNA srpRNA -2 318 1 837 150 0 8 chr1 66479997 66480124 -176184229 - FLAM_A SINE Alu -7 135 10 292 296 65 9 chr1 66480420 66480528 -176183825 + MIR3 SINE MIR 43 156 -52 1123 224 91 9 chr1 66480546 66480877 -176183476 - L1M4 LINE L1 -2251 3895 3538 451 319 38 27 chr1 66481158 66481343 -176183010 + MIR SINE MIR 28 214 -48 180 0 0 0 chr1 66481500 66481520 -176182833 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 957 247 12 28 chr1 66482117 66482372 -176181981 - MIR SINE MIR 0 262 12 185 197 15 0 chr1 66482466 66482532 -176181821 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 231 256 56 33 chr1 66482619 66482709 -176181644 - MIR SINE MIR -165 97 6 806 199 7 0 chr1 66483135 66483281 -176181072 - MER20 DNA MER1_type -6 213 67 381 277 123 27 chr1 66483370 66483590 -176180763 - MIR SINE MIR 0 262 22 249 312 18 9 chr1 66483693 66483802 -176180551 - Charlie3 DNA MER1_type -1088 1622 1513 246 336 46 30 chr1 66483957 66484088 -176180265 - MIR SINE MIR -57 151 19 344 303 29 67 chr1 66484301 66484509 -176179844 + MIR SINE MIR 42 241 -21 282 409 31 6 chr1 66485131 66485290 -176179063 - MIR SINE MIR -33 229 67 202 289 96 127 chr1 66485574 66485865 -176178488 + L2 LINE L2 2951 3232 -40 294 163 0 0 chr1 66486287 66486330 -176178023 + L2 LINE L2 3225 3267 -5 188 304 101 0 chr1 66486526 66486595 -176177758 + MIR SINE MIR 117 192 -70 235 286 0 0 chr1 66486885 66486941 -176177412 + MIR SINE MIR 85 140 -68 353 318 131 0 chr1 66487493 66487669 -176176684 - L3 LINE CR1 -103 1474 1276 342 344 76 20 chr1 66487845 66488095 -176176258 - L2 LINE L2 -189 3083 2820 202 232 36 36 chr1 66488272 66488328 -176176025 + L2 LINE L2 3258 3313 0 256 260 17 141 chr1 66488767 66488944 -176175409 - MLT1J2 LTR MaLR -293 157 3 343 311 172 6 chr1 66489172 66489352 -176175001 - MLT1I LTR MaLR -87 322 113 221 382 15 8 chr1 66489890 66490021 -176174332 + L2 LINE L2 2936 3067 -205 1881 209 50 24 chr1 66490110 66490565 -176173788 + MLT1C LTR MaLR 1 467 0 186 43 0 0 chr1 66490648 66490671 -176173682 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 206 257 67 76 chr1 66490781 66490886 -176173467 + L3 LINE CR1 1371 1474 -103 524 251 34 29 chr1 66492244 66492419 -176171934 + MIR SINE MIR 14 189 -73 287 261 57 11 chr1 66492601 66492689 -176171664 - MIR SINE MIR -15 247 156 950 180 24 15 chr1 66493068 66493274 -176171079 + MER31A LTR ERV1 276 483 -2 423 52 0 0 chr1 66493275 66493333 -176171020 + (CA)n Simple_repeat Simple_repeat 2 59 0 384 323 110 0 chr1 66493542 66493706 -176170647 - MIR SINE MIR -26 236 55 188 271 102 0 chr1 66494209 66494268 -176170085 + MIR SINE MIR 111 175 -87 180 246 35 18 chr1 66494495 66494552 -176169801 - MIR3 SINE MIR 0 208 151 1086 211 78 54 chr1 66496232 66496564 -176167789 + MER2 DNA MER2_type 6 345 0 256 207 161 46 chr1 66496835 66496922 -176167431 - L2 LINE L2 -35 3237 3141 360 250 171 43 chr1 66496957 66497121 -176167232 - MIR SINE MIR 0 262 78 1689 177 7 3 chr1 66497168 66497498 -176166855 - AluJo SINE Alu 0 331 1 241 233 0 17 chr1 66497756 66497816 -176166537 + (TTCTG)n Simple_repeat Simple_repeat 3 61 0 622 215 129 25 chr1 66498031 66498238 -176166115 + AluJb SINE Alu 129 312 0 21 0 0 0 chr1 66498371 66498392 -176165961 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 66498433 66498474 -176165879 + AT_rich Low_complexity Low_complexity 1 41 0 2454 81 0 0 chr1 66498700 66498998 -176165355 - AluSq SINE Alu -11 302 5 349 339 47 18 chr1 66499043 66499214 -176165139 - MIR SINE MIR -50 212 37 312 255 189 13 chr1 66499277 66499430 -176164923 + MIR SINE MIR 28 207 -55 645 106 0 0 chr1 66500682 66500767 -176163586 - AluJ/FLAM SINE Alu -227 85 1 245 287 47 54 chr1 66500832 66500961 -176163392 + L2 LINE L2 3168 3295 -18 234 336 97 32 chr1 66502060 66502307 -176162046 - L2 LINE L2 -342 2972 2710 310 287 49 33 chr1 66503216 66503338 -176161015 - MIR3 SINE MIR -31 177 54 503 337 81 46 chr1 66504730 66505077 -176159276 + L2 LINE L2 2899 3257 -15 219 69 0 0 chr1 66505077 66505106 -176159247 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 295 333 29 10 chr1 66506189 66506291 -176158062 - L2 LINE L2 -11 3261 3158 958 207 50 5 chr1 66507138 66507336 -176157017 + MIR SINE MIR 2 208 -54 2647 29 0 0 chr1 66507337 66507680 -176156673 - L1PA2 LINE L1 -754 5392 5050 6448 20 0 4 chr1 66507680 66508425 -176155928 + L1PA2 LINE L1 5404 6149 -6 760 240 6 11 chr1 66509828 66510007 -176154346 + MER5B DNA MER1_type 1 178 0 308 247 71 0 chr1 66510126 66510211 -176154142 - MIR SINE MIR -91 171 81 917 291 137 35 chr1 66510238 66510699 -176153654 - L2 LINE L2 0 3313 2806 189 0 0 0 chr1 66510714 66510735 -176153618 + (TG)n Simple_repeat Simple_repeat 1 21 0 432 249 48 120 chr1 66511065 66511358 -176152995 + MLT1K LTR MaLR 342 586 -2 354 284 33 56 chr1 66511673 66511863 -176152490 - L1MDa LINE L1 -4891 1324 1209 1815 179 0 0 chr1 66511863 66512153 -176152200 - AluJb SINE Alu -20 292 3 354 284 33 56 chr1 66512153 66512417 -176151936 - L1MDa LINE L1 -5006 1209 940 226 269 0 0 chr1 66513219 66513299 -176151054 - MIR SINE MIR -63 145 73 1017 108 43 95 chr1 66513348 66513579 -176150774 + MLT1B LTR MaLR 1 219 -171 338 286 38 0 chr1 66513859 66513964 -176150389 + LTR33A LTR ERVL 287 395 -128 1399 228 47 41 chr1 66513966 66514430 -176149923 + MLT1C LTR MaLR 1 467 0 397 211 47 23 chr1 66514430 66514558 -176149795 + LTR33A LTR ERVL 393 523 0 186 43 0 0 chr1 66514569 66514592 -176149761 + (CA)n Simple_repeat Simple_repeat 2 24 0 442 336 94 50 chr1 66514696 66515080 -176149273 - L1MC4a LINE L1 -1866 5942 5542 230 234 13 26 chr1 66515512 66515589 -176148764 - LTR33A LTR ERVL -2 521 446 200 111 0 28 chr1 66515748 66515784 -176148569 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 369 0 0 0 chr1 66515817 66515858 -176148495 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 216 182 0 0 chr1 66516365 66516409 -176147944 + CT-rich Low_complexity Low_complexity 1 44 0 183 42 0 0 chr1 66517137 66517161 -176147192 + (CAA)n Simple_repeat Simple_repeat 2 25 0 222 295 85 4 chr1 66517688 66517816 -176146537 - MIR SINE MIR -46 216 28 235 235 62 12 chr1 66517872 66517953 -176146400 - HAL1b LINE L1 -883 465 381 412 307 94 53 chr1 66517986 66518415 -176145938 - HAL1b LINE L1 -970 1390 79 270 328 43 52 chr1 66519713 66519829 -176144524 + L2 LINE L2 2910 3024 -248 1872 158 9 90 chr1 66520015 66520036 -176144317 - MLT1B LTR MaLR 0 390 369 1773 207 25 6 chr1 66520036 66520394 -176143959 + MLT1A1 LTR MaLR 1 365 0 1872 158 9 90 chr1 66520394 66520692 -176143661 - MLT1B LTR MaLR -21 369 111 1952 156 3 7 chr1 66520692 66520994 -176143359 - AluSx SINE Alu -11 301 1 1872 158 9 90 chr1 66520994 66521097 -176143256 - MLT1B LTR MaLR -279 111 1 346 310 49 7 chr1 66521137 66521279 -176143074 + MIR SINE MIR 93 240 -22 282 310 30 3 chr1 66521498 66521608 -176142745 - MIR SINE MIR -61 147 41 206 354 31 0 chr1 66521828 66521893 -176142460 - MIR SINE MIR -191 71 5 529 229 117 83 chr1 66521923 66522128 -176142225 + MIR SINE MIR 2 213 -49 208 209 23 0 chr1 66523465 66523508 -176140845 - L2 LINE L2 -5 3308 3265 763 288 47 5 chr1 66523768 66523980 -176140373 + L2 LINE L2 3093 3313 0 1615 169 150 21 chr1 66524024 66524403 -176139950 + MSTA LTR MaLR 1 428 0 4030 187 26 8 chr1 66524403 66525201 -176139152 + MSTA-int LTR MaLR 1 813 -838 3514 144 8 12 chr1 66525213 66525803 -176138550 + MSTA-int LTR MaLR 993 1580 0 2026 128 121 43 chr1 66525803 66526200 -176138153 + MSTA LTR MaLR 1 428 0 360 311 99 22 chr1 66526200 66526422 -176137931 - L2 LINE L2 -41 3272 3034 1323 279 54 46 chr1 66526530 66527309 -176137044 - L2 LINE L2 0 3313 2535 359 182 30 30 chr1 66527323 66527422 -176136931 + L1M4 LINE L1 3472 3570 -2576 553 174 0 0 chr1 66527426 66527518 -176136835 - Tigger7 DNA MER2_type 0 2487 2396 * 2668 182 35 16 chr1 66527517 66528028 -176136325 - Tigger7 DNA MER2_type -1965 522 2 395 308 59 16 chr1 66528029 66528454 -176135899 - L1MEc LINE L1 -4913 1483 1041 * 1819 216 20 5 chr1 66528449 66528888 -176135465 - L1MC3 LINE L1 -1 7784 7339 * 2250 271 90 20 chr1 66528884 66529850 -176134503 - L1MEc LINE L1 -5341 1055 22 863 233 56 62 chr1 66530037 66530325 -176134028 - MLT1A2 LTR MaLR -82 292 7 357 327 48 36 chr1 66530792 66530957 -176133396 - MIR SINE MIR -48 214 48 195 139 0 28 chr1 66530954 66530990 -176133363 + L2 LINE L2 3238 3272 0 * 437 356 69 13 chr1 66531141 66531374 -176132979 + MIR SINE MIR 7 252 -10 385 300 14 21 chr1 66531378 66531518 -176132835 + GA-rich Low_complexity Low_complexity 1 139 0 216 158 0 0 chr1 66531531 66531569 -176132784 + GA-rich Low_complexity Low_complexity 3 40 0 1470 153 131 12 chr1 66531698 66532018 -176132335 + MER46B DNA MER2_type 4 236 0 1547 168 123 53 chr1 66532066 66532548 -176131805 + MER74A LTR ERVL 1 556 -2 288 246 84 78 chr1 66532635 66532802 -176131551 - L2 LINE L2 -213 3059 2892 193 370 85 12 chr1 66532829 66532994 -176131359 + L2 LINE L2 3096 3272 0 973 339 184 19 chr1 66533550 66534465 -176129888 + L2 LINE L2 1771 2836 -478 2302 100 0 3 chr1 66534581 66534882 -176129471 - AluSc SINE Alu -9 300 1 196 308 39 0 chr1 66535101 66535153 -176129200 + L2 LINE L2 3238 3291 -22 364 301 48 7 chr1 66536535 66536681 -176127672 - MIR SINE MIR -11 251 100 348 24 0 0 chr1 66536925 66536966 -176127387 + (CA)n Simple_repeat Simple_repeat 2 42 0 458 215 14 151 chr1 66537299 66537376 -176126977 + MIR SINE MIR 48 134 -128 2359 89 3 10 chr1 66537376 66537680 -176126673 - AluSg SINE Alu -7 303 2 458 215 14 151 chr1 66537680 66537821 -176126532 + MIR SINE MIR 134 236 -26 811 204 105 5 chr1 66539451 66539642 -176124711 + MER63A DNA MER1_type 1 210 0 277 301 86 0 chr1 66539728 66539821 -176124532 + L2 LINE L2 3133 3233 -39 307 304 39 59 chr1 66539983 66540187 -176124166 + LTR67 LTR ERVL 2 201 -356 379 298 139 39 chr1 66540693 66540901 -176123452 - L2 LINE L2 -7 3265 3037 232 317 69 20 chr1 66541112 66541213 -176123140 + L2 LINE L2 3151 3256 -16 252 0 0 0 chr1 66541284 66541312 -176123041 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 772 268 54 8 chr1 66541423 66541662 -176122691 - MIR SINE MIR 0 262 13 235 279 29 0 chr1 66542079 66542147 -176122206 + L3 LINE CR1 1497 1566 -11 1175 203 44 41 chr1 66542148 66542277 -176122076 + MLT1A1 LTR MaLR 1 128 -237 1867 181 42 16 chr1 66542277 66542663 -176121690 - MSTD LTR MaLR 0 396 1 1175 203 44 41 chr1 66542663 66542897 -176121456 + MLT1A1 LTR MaLR 128 365 0 936 286 84 25 chr1 66543182 66543549 -176120804 + MLT1I LTR MaLR 6 394 -15 311 354 51 20 chr1 66543989 66544184 -176120169 - MIR SINE MIR -56 206 6 270 246 51 102 chr1 66544329 66544447 -176119906 + MIR SINE MIR 28 140 -68 182 339 95 21 chr1 66545482 66545671 -176118682 - L2 LINE L2 -845 2469 2267 862 165 0 0 chr1 66545701 66545834 -176118519 - FLAM_C SINE Alu 0 133 1 1702 248 33 31 chr1 66546591 66547135 -176117218 + MER74A LTR ERVL 1 545 -13 821 102 0 0 chr1 66547162 66547298 -176117055 - AluSp/q SINE Alu 0 313 178 332 310 62 7 chr1 66547530 66547675 -176116678 - MIR SINE MIR -13 249 97 411 317 103 70 chr1 66547676 66548222 -176116131 - L2 LINE L2 0 3272 2707 2028 93 7 18 chr1 66548326 66548606 -176115747 - AluSc SINE Alu -20 289 13 189 300 189 33 chr1 66548830 66548920 -176115433 - L2 LINE L2 -5 3308 3205 2376 50 0 4 chr1 66548953 66549265 -176115088 - AluY SINE Alu 0 311 1 244 250 0 26 chr1 66549379 66549455 -176114898 + L2 LINE L2 3154 3227 -86 627 219 99 69 chr1 66550409 66550605 -176113748 - L1MC5 LINE L1 -37 7924 7735 996 198 11 0 chr1 66550605 66550792 -176113561 + MER5A DNA MER1_type 1 189 0 627 219 99 69 chr1 66550792 66550988 -176113365 - L1MC5 LINE L1 -226 7735 7520 633 199 8 30 chr1 66551001 66551370 -176112983 + CT-rich Low_complexity Low_complexity 1 361 0 1446 212 33 23 chr1 66551370 66551672 -176112681 - AluJo SINE Alu -5 307 3 1298 213 97 78 chr1 66551713 66552602 -176111751 - L1MC5 LINE L1 -470 7491 6544 1697 231 48 59 chr1 66552914 66553454 -176110899 + MLT1F LTR MaLR 1 534 -8 1269 291 32 67 chr1 66553737 66555703 -176108650 - L1MC5 LINE L1 -753 5393 4023 392 338 30 93 chr1 66555742 66556044 -176108309 - L2 LINE L2 -76 3196 2914 263 333 51 51 chr1 66556222 66556516 -176107837 + MLT1G1 LTR MaLR 79 372 -177 361 127 101 13 chr1 66556517 66556596 -176107757 + MLT1G1 LTR MaLR 497 582 -13 390 376 85 9 chr1 66556639 66556958 -176107395 - L2 LINE L2 -671 2643 2301 211 296 0 74 chr1 66556965 66557073 -176107280 + MIR SINE MIR 120 219 -43 320 280 167 7 chr1 66557313 66557463 -176106890 + MIR3 SINE MIR 17 190 -18 871 262 13 18 chr1 66558214 66558443 -176105910 + MIR SINE MIR 29 256 -6 309 235 0 78 chr1 66558778 66558880 -176105473 + MIR SINE MIR 98 191 -71 227 323 129 0 chr1 66559105 66559198 -176105155 + MIR SINE MIR 25 129 -79 21 0 0 0 chr1 66559751 66559772 -176104581 + AT_rich Low_complexity Low_complexity 1 21 0 2148 87 40 0 chr1 66560909 66561186 -176103167 + AluSg SINE Alu 16 303 -7 330 269 156 66 chr1 66561350 66561715 -176102638 + L1ME4a LINE L1 5722 6119 -2 817 344 117 29 chr1 66561956 66562980 -176101373 - L2 LINE L2 -1154 2160 1047 741 208 50 37 chr1 66563080 66563321 -176101032 + L1ME3A LINE L1 5925 6168 -2 433 308 43 43 chr1 66563456 66563664 -176100689 - MIR SINE MIR -4 258 51 180 241 24 96 chr1 66564457 66564540 -176099813 - L3 LINE CR1 -2 1575 1499 195 100 0 0 chr1 66565004 66565034 -176099319 + (T)n Simple_repeat Simple_repeat 1 30 0 500 261 186 53 chr1 66566492 66566588 -176097765 + LTR33 LTR ERVL 3 85 -436 1652 176 3 40 chr1 66566588 66566889 -176097464 + AluJo SINE Alu 1 290 -22 500 261 186 53 chr1 66566889 66567244 -176097109 + LTR33 LTR ERVL 85 514 -7 442 352 154 15 chr1 66567259 66567648 -176096705 - L1ME LINE L1 -419 5702 5260 182 33 67 0 chr1 66567911 66567941 -176096412 + A-rich Low_complexity Low_complexity 3 34 0 744 326 132 6 chr1 66568268 66568631 -176095722 + L2 LINE L2 2597 3001 -312 2821 87 5 12 chr1 66568784 66569196 -176095157 + MLT2A1 LTR ERVL 1 409 -35 359 50 89 10 chr1 66569201 66569302 -176095051 + (TA)n Simple_repeat Simple_repeat 2 110 0 929 116 30 0 chr1 66569309 66569473 -176094880 - Tigger1 DNA MER2_type -54 2364 2196 24 0 0 0 chr1 66569473 66569497 -176094856 + AT_rich Low_complexity Low_complexity 1 24 0 486 107 31 25 chr1 66569505 66569664 -176094689 + (TA)n Simple_repeat Simple_repeat 2 161 0 415 114 68 0 chr1 66569680 66569970 -176094383 + (TA)n Simple_repeat Simple_repeat 1 309 0 290 130 19 16 chr1 66569981 66570045 -176094308 + MLT2B1 LTR ERVL 399 520 0 268 239 340 21 chr1 66570341 66570579 -176093774 + L2 LINE L2 2991 3304 -9 5037 121 18 5 chr1 66570784 66571614 -176092739 - Tigger1 DNA MER2_type 0 2418 1578 6307 56 0 10 chr1 66571614 66573004 -176091349 - L1PA7 LINE L1 0 6154 4803 214 290 122 28 chr1 66573036 66573143 -176091210 - L3 LINE CR1 -453 1124 1008 400 334 228 19 chr1 66573230 66573712 -176090641 - L3 LINE CR1 -752 825 243 346 255 31 20 chr1 66574231 66574329 -176090024 - MER5A DNA MER1_type -87 102 4 185 357 10 10 chr1 66574337 66574435 -176089918 - L2 LINE L2 -639 2675 2578 227 227 86 98 chr1 66574562 66574681 -176089672 + MIR3 SINE MIR 35 153 -55 1986 170 89 18 chr1 66574681 66575117 -176089236 + MLT1C LTR MaLR 1 467 0 227 227 86 98 chr1 66575117 66575160 -176089193 + MIR3 SINE MIR 153 195 -13 193 229 0 0 chr1 66576018 66576053 -176088300 + MIR SINE MIR 115 149 -113 578 274 19 33 chr1 66576153 66576365 -176087988 - MIR SINE MIR 0 262 54 274 296 37 28 chr1 66576566 66576674 -176087679 - MER5B DNA MER1_type -61 117 9 416 308 11 76 chr1 66577697 66577882 -176086471 - MIR SINE MIR -50 212 40 381 307 55 31 chr1 66578279 66578442 -176085911 - MIR3 SINE MIR -22 186 20 328 272 88 29 chr1 66579045 66579181 -176085172 + MIR SINE MIR 49 192 -70 2247 112 0 0 chr1 66579187 66579491 -176084862 + AluY SINE Alu 1 304 -7 337 335 79 28 chr1 66580023 66580383 -176083970 + L2 LINE L2 2637 3026 -246 742 262 141 0 chr1 66580389 66580595 -176083758 + MIR SINE MIR 28 262 0 1833 196 97 24 chr1 66580743 66581206 -176083147 + MLT1D LTR MaLR 1 497 -8 208 276 51 41 chr1 66581225 66581323 -176083030 + L2 LINE L2 3215 3313 0 2429 139 28 24 chr1 66581572 66581996 -176082357 - Tigger2a DNA MER2_type -4 430 5 297 292 241 0 chr1 66582606 66582743 -176081610 + MIR SINE MIR 80 249 -13 713 319 4 9 chr1 66582761 66582993 -176081360 - MIR SINE MIR 0 262 32 415 259 222 11 chr1 66583884 66583924 -176080429 + MIR SINE MIR 1 31 -231 1885 149 137 35 chr1 66583924 66584348 -176080005 - MLT1C LTR MaLR 0 467 1 415 259 222 11 chr1 66584348 66584496 -176079857 + MIR SINE MIR 31 229 -33 1135 154 9 5 chr1 66584528 66584742 -176079611 - L1MA5 LINE L1 -26 6274 6060 196 313 62 0 chr1 66585119 66585199 -176079154 + L2 LINE L2 3186 3270 -2 408 307 7 15 chr1 66585272 66585409 -176078944 - MIR SINE MIR -16 246 111 367 299 19 19 chr1 66585942 66586049 -176078304 - MIR SINE MIR -151 111 5 190 260 0 110 chr1 66586225 66586237 -176078116 - L3 LINE CR1 -1 1576 1564 2138 155 17 8 chr1 66586237 66586599 -176077754 + MLT1A1 LTR MaLR 1 365 0 190 260 0 110 chr1 66586599 66586659 -176077694 - L3 LINE CR1 -13 1564 1512 444 362 13 0 chr1 66586722 66586874 -176077479 + MIR SINE MIR 4 157 -105 623 289 124 0 chr1 66586890 66587115 -176077238 - MIR SINE MIR -6 256 4 219 329 0 0 chr1 66587142 66587212 -176077141 + MIR SINE MIR 186 255 -7 325 372 67 72 chr1 66587555 66587931 -176076422 - L2 LINE L2 -7 3265 2892 272 311 16 19 chr1 66588091 66588281 -176076072 - MLT1I LTR MaLR -1 421 266 182 167 0 0 chr1 66589103 66589133 -176075220 + MIR SINE MIR 115 144 -64 528 59 0 0 chr1 66589226 66589294 -176075059 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 361 241 26 26 chr1 66590192 66590308 -176074045 - MER20B DNA MER1_type -604 179 64 236 171 0 0 chr1 66590550 66590591 -176073762 + L1PB2 LINE L1 5740 5780 -374 870 83 0 40 chr1 66590593 66590804 -176073549 + (TA)n Simple_repeat Simple_repeat 1 202 0 2095 103 10 3 chr1 66590804 66591106 -176073247 + L1PB2 LINE L1 5846 6149 -2 25 31 0 0 chr1 66591106 66591138 -176073215 + AT_rich Low_complexity Low_complexity 1 32 0 2201 153 40 31 chr1 66591709 66592250 -176072103 + MLT2A2 LTR ERVL 1 552 -2 353 225 70 62 chr1 66592336 66592465 -176071888 - MIR SINE MIR -108 154 25 401 210 0 8 chr1 66592471 66592590 -176071763 + (TA)n Simple_repeat Simple_repeat 1 118 0 2346 139 2 40 chr1 66592747 66593150 -176071203 - MLT1B LTR MaLR -2 388 1 219 114 0 0 chr1 66593433 66593468 -176070885 + (TG)n Simple_repeat Simple_repeat 2 36 0 278 266 52 17 chr1 66594291 66594411 -176069942 - MIR SINE MIR -65 143 43 195 276 143 9 chr1 66594878 66594983 -176069370 + L2 LINE L2 3194 3312 -1 192 366 119 0 chr1 66595315 66595416 -176068937 - MIR SINE MIR -137 125 13 337 266 135 15 chr1 66596432 66596610 -176067743 - MIR SINE MIR -29 233 36 368 259 97 27 chr1 66596967 66597152 -176067201 + MLT1K LTR MaLR 389 586 -2 201 121 0 0 chr1 66597742 66597775 -176066578 + (TAA)n Simple_repeat Simple_repeat 3 35 0 445 314 26 0 chr1 66598119 66598275 -176066078 + MIR SINE MIR 55 214 -48 211 273 0 39 chr1 66599019 66599096 -176065257 + CT-rich Low_complexity Low_complexity 2 75 0 2547 267 88 41 chr1 66599256 66602113 -176062240 - L1ME3A LINE L1 -20 6945 3907 472 174 0 0 chr1 66602182 66602251 -176062102 + MER75B DNA T2_type 1 69 -174 1233 109 0 21 chr1 66602836 66603028 -176061325 + MER75B DNA T2_type 51 238 -5 1358 268 71 18 chr1 66603031 66603717 -176060636 - L1ME3A LINE L1 -3137 3804 3082 829 328 30 21 chr1 66603824 66604162 -176060191 + LTR16C LTR ERVL 149 489 -2 512 263 26 0 chr1 66604164 66604316 -176060037 - L1ME3A LINE L1 -3860 3081 2926 359 205 24 0 chr1 66604688 66604771 -176059582 - L1ME3A LINE L1 -4572 2369 2285 1023 262 70 9 chr1 66604937 66605265 -176059088 - L1ME3 LINE L1 -168 5994 5647 442 263 143 44 chr1 66605275 66605647 -176058706 - L1ME3A LINE L1 -4619 2322 1814 21 0 0 0 chr1 66605821 66605842 -176058511 + AT_rich Low_complexity Low_complexity 1 21 0 241 254 112 35 chr1 66605876 66606073 -176058280 - L1ME3A LINE L1 -4919 1504 1293 533 266 21 72 chr1 66606584 66606821 -176057532 - MLT1L LTR MaLR -361 254 30 219 299 103 37 chr1 66606917 66607024 -176057329 - MIR SINE MIR -148 114 1 617 196 36 80 chr1 66608567 66608791 -176055562 - L1MD2 LINE L1 0 6359 6146 270 0 0 0 chr1 66608791 66608821 -176055532 + (TG)n Simple_repeat Simple_repeat 2 31 0 1204 233 160 18 chr1 66609151 66609494 -176054859 + MSTD LTR MaLR 1 392 -4 220 300 120 40 chr1 66609728 66609878 -176054475 - MIR SINE MIR -66 142 20 773 313 9 4 chr1 66609923 66610150 -176054203 - MIR SINE MIR 0 262 35 1785 165 3 10 chr1 66610168 66610465 -176053888 - AluJb SINE Alu -17 295 1 384 248 33 33 chr1 66610565 66610686 -176053667 + Charlie8 DNA MER1_type 55 175 -2242 192 338 15 15 chr1 66610785 66610853 -176053500 + MIR SINE MIR 11 78 -184 1584 255 70 34 chr1 66610961 66611436 -176052917 + MLT1H1 LTR MaLR 54 545 -10 2081 134 3 0 chr1 66612058 66612350 -176052003 + AluSx SINE Alu 1 293 -19 1435 153 0 5 chr1 66612516 66612738 -176051615 - AluJb SINE Alu -85 227 7 199 301 130 27 chr1 66612822 66612968 -176051385 + L2 LINE L2 2914 3074 -198 364 340 13 33 chr1 66613463 66613584 -176050769 + MIR SINE MIR 6 126 -136 2335 67 0 3 chr1 66613584 66613917 -176050436 - AluY SINE Alu 0 332 1 364 340 13 33 chr1 66613917 66613947 -176050406 + MIR SINE MIR 126 155 -107 368 379 48 55 chr1 66615019 66615309 -176049044 + L2 LINE L2 2983 3270 -2 283 376 7 7 chr1 66615369 66615510 -176048843 - MIR SINE MIR -13 249 109 5224 96 2 29 chr1 66615780 66616574 -176047779 + L1PA14 LINE L1 5389 6161 0 506 268 13 7 chr1 66616633 66616786 -176047567 - L1MA10 LINE L1 -1 6333 6180 875 244 70 11 chr1 66616792 66617063 -176047290 - L1M4 LINE L1 -2007 4139 3853 550 279 25 7 chr1 66617416 66617637 -176046716 - L1MC3 LINE L1 -130 6036 5821 356 234 48 48 chr1 66619009 66619133 -176045220 + L2 LINE L2 3185 3308 -5 549 335 56 59 chr1 66619632 66619969 -176044384 - L2 LINE L2 0 3272 2937 314 233 111 26 chr1 66620326 66620440 -176043913 - MIR SINE MIR -34 174 51 312 326 69 7 chr1 66620451 66620595 -176043758 + MIR SINE MIR 1 153 -109 310 335 18 24 chr1 66622017 66622187 -176042166 - MIR3 SINE MIR -21 187 19 354 296 163 17 chr1 66622318 66622490 -176041863 - MIR SINE MIR -54 208 12 404 357 14 0 chr1 66622521 66622661 -176041692 - L3 LINE CR1 -15 1562 1421 1849 152 7 3 chr1 66622835 66623124 -176041229 - AluJo SINE Alu -16 296 7 199 301 130 27 chr1 66623208 66623354 -176040999 + L2 LINE L2 2914 3074 -198 364 340 13 33 chr1 66623849 66623970 -176040383 + MIR SINE MIR 6 126 -136 2335 67 0 3 chr1 66623970 66624323 -176040030 - AluY SINE Alu 0 352 1 364 340 13 33 chr1 66624323 66624353 -176040000 + MIR SINE MIR 126 155 -107 378 376 48 55 chr1 66625425 66625715 -176038638 + L2 LINE L2 2983 3270 -2 283 376 7 7 chr1 66625775 66625916 -176038437 - MIR SINE MIR -13 249 109 5267 95 2 28 chr1 66626186 66626979 -176037374 + L1PA14 LINE L1 5389 6161 0 497 274 13 7 chr1 66627037 66627190 -176037163 - L1MA10 LINE L1 -1 6333 6180 875 244 70 11 chr1 66627196 66627467 -176036886 - L1M4 LINE L1 -2007 4139 3853 535 275 48 19 chr1 66627820 66628027 -176036326 - L1ME1 LINE L1 -130 6036 5824 334 242 48 48 chr1 66629413 66629537 -176034816 + L2 LINE L2 3185 3308 -5 549 335 56 59 chr1 66630036 66630373 -176033980 - L2 LINE L2 0 3272 2937 314 233 111 26 chr1 66630735 66630849 -176033504 - MIR SINE MIR -34 174 51 312 326 69 7 chr1 66630860 66631004 -176033349 + MIR SINE MIR 1 153 -109 310 335 18 24 chr1 66632426 66632596 -176031757 - MIR3 SINE MIR -21 187 19 354 296 163 17 chr1 66632727 66632899 -176031454 - MIR SINE MIR -54 208 12 495 340 7 0 chr1 66632930 66633071 -176031282 - L3 LINE CR1 -15 1562 1421 330 358 73 0 chr1 66633196 66633305 -176031048 - L2 LINE L2 0 3272 3156 402 356 31 11 chr1 66633843 66634034 -176030319 - MIR SINE MIR -48 214 20 360 257 99 0 chr1 66634121 66634222 -176030131 + MER69 DNA AcHobo 36 146 -1080 239 250 88 0 chr1 66634217 66634285 -176030068 + MER69 DNA AcHobo 2441 2514 -12 * 1457 208 31 10 chr1 66634330 66634619 -176029734 - AluJb SINE Alu -17 295 1 489 261 0 17 chr1 66634619 66634734 -176029619 - L2 LINE L2 -10 3303 3191 594 328 56 22 chr1 66634814 66635082 -176029271 - LTR33 LTR ERVL -244 277 1 428 340 6 19 chr1 66636000 66636162 -176028191 - MIR3 SINE MIR -25 183 24 183 193 102 114 chr1 66636646 66636734 -176027619 + MIR3 SINE MIR 13 99 -109 23 86 0 0 chr1 66638114 66638172 -176026181 + AT_rich Low_complexity Low_complexity 1 58 0 2351 87 13 0 chr1 66638235 66638535 -176025818 - AluY SINE Alu -7 304 1 2977 169 16 32 chr1 66639155 66640281 -176024072 + L1PB4 LINE L1 4693 5803 -353 326 156 16 0 chr1 66640302 66640366 -176023987 + (TA)n Simple_repeat Simple_repeat 1 65 0 2017 173 8 0 chr1 66640373 66640743 -176023610 + L1PB4 LINE L1 5782 6154 -2 231 49 0 0 chr1 66641500 66641541 -176022812 - AluY SINE Alu 0 301 261 1730 68 0 22 chr1 66641542 66641764 -176022589 - AluY SINE Alu -94 217 1 1687 334 68 29 chr1 66642011 66643238 -176021115 + ERVL LTR ERVL 4075 5350 -414 1915 132 3 0 chr1 66643749 66644045 -176020308 - L1PA16 LINE L1 0 6166 5870 1355 226 84 42 chr1 66645124 66645712 -176018641 + MLT1E3 LTR MaLR 1 621 -3 318 316 138 29 chr1 66645762 66645936 -176018417 + MIR SINE MIR 49 241 -21 345 283 88 0 chr1 66646687 66646800 -176017553 + MIR SINE MIR 114 236 -26 306 0 0 0 chr1 66647126 66647160 -176017193 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 854 289 97 34 chr1 66647223 66647603 -176016750 - L2 LINE L2 0 3313 2910 383 345 0 14 chr1 66647772 66647914 -176016439 - L2 LINE L2 -7 3306 3167 288 130 0 0 chr1 66648030 66648076 -176016277 + (TTC)n Simple_repeat Simple_repeat 3 48 0 740 135 0 30 chr1 66648080 66648213 -176016140 - AluJo SINE Alu -2 310 182 * 749 145 0 38 chr1 66648208 66648339 -176016014 - AluJo SINE Alu -170 142 17 222 325 105 18 chr1 66648991 66649105 -176015248 + MIR SINE MIR 23 146 -116 349 150 37 63 chr1 66650685 66650799 -176013554 - MLT1H1 LTR MaLR -294 296 187 1182 279 81 20 chr1 66650848 66650940 -176013413 - L1MEc LINE L1 -3398 2984 2899 2195 118 131 8 chr1 66650940 66651321 -176013032 + MSTA LTR MaLR 1 428 0 1182 279 81 20 chr1 66651321 66652562 -176011791 - L1MEc LINE L1 -3483 2899 1604 369 277 0 9 chr1 66652575 66652687 -176011666 + (TA)n Simple_repeat Simple_repeat 2 112 0 499 301 82 61 chr1 66652689 66652968 -176011385 - L1MEc LINE L1 -4927 1457 1173 306 289 8 8 chr1 66653915 66654043 -176010310 - L1MEc LINE L1 -5980 392 265 26 30 0 0 chr1 66654333 66654366 -176009987 + AT_rich Low_complexity Low_complexity 1 33 0 302 283 153 46 chr1 66654520 66654866 -176009487 - L1M4 LINE L1 -3303 2843 2461 252 0 0 0 chr1 66654977 66655005 -176009348 + (TAA)n Simple_repeat Simple_repeat 1 28 0 298 315 39 10 chr1 66655958 66656143 -176008210 - MIR SINE MIR -54 208 18 297 306 24 16 chr1 66656229 66656353 -176008000 - L2 LINE L2 -212 3060 2936 591 247 128 59 chr1 66656473 66656951 -176007402 + MLT1J LTR MaLR 1 511 0 364 262 175 29 chr1 66657740 66657946 -176006407 + MIR SINE MIR 20 255 -7 194 296 45 34 chr1 66658744 66658832 -176005521 - L3 LINE CR1 -73 1504 1416 1976 172 108 7 chr1 66658905 66659329 -176005024 - MLT1C LTR MaLR 0 467 1 285 322 200 0 chr1 66659409 66659589 -176004764 + MIR SINE MIR 37 252 -10 215 320 97 19 chr1 66659654 66659757 -176004596 - L2 LINE L2 0 3272 3162 406 298 123 0 chr1 66659888 66660059 -176004294 - MIR SINE MIR -8 254 63 876 204 92 29 chr1 66660967 66661173 -176003180 + MER20 DNA MER1_type 1 219 0 236 388 0 8 chr1 66661198 66661322 -176003031 + MIR SINE MIR 30 153 -55 183 296 0 0 chr1 66661732 66661776 -176002577 + L2 LINE L2 3221 3264 -8 225 0 0 0 chr1 66662021 66662046 -176002307 + (T)n Simple_repeat Simple_repeat 1 25 0 223 313 92 38 chr1 66662154 66662285 -176002068 + L2 LINE L2 3129 3266 -6 221 188 0 62 chr1 66662361 66662409 -176001944 + L2 LINE L2 3228 3272 0 477 319 19 28 chr1 66662876 66663092 -176001261 + MIR SINE MIR 49 262 0 208 291 152 42 chr1 66663401 66663566 -176000787 + MIR3 SINE MIR 19 201 -7 236 332 192 28 chr1 66663974 66664224 -176000129 + L3 LINE CR1 1287 1577 0 199 297 116 65 chr1 66664253 66664408 -175999945 - MIR SINE MIR -10 252 90 334 296 28 62 chr1 66664867 66665043 -175999310 - MIR SINE MIR -6 256 87 1217 226 53 45 chr1 66665093 66665562 -175998791 + MER113 DNA MER1_type? 6 478 -43 2214 62 41 10 chr1 66665833 66666123 -175998230 - AluY SINE Alu -12 299 1 244 314 78 33 chr1 66666401 66666554 -175997799 - L2 LINE L2 -1354 1960 1801 539 333 194 17 chr1 66667009 66667412 -175996941 - L3 LINE CR1 -123 1454 981 * 880 272 16 12 chr1 66667410 66667653 -175996700 - MIR SINE MIR -1 261 18 252 246 35 0 chr1 66667780 66667837 -175996516 - MIR SINE MIR -91 171 113 200 297 0 40 chr1 66667842 66667916 -175996437 - L2 LINE L2 -11 3261 3191 454 293 40 11 chr1 66670402 66670576 -175993777 - MIR SINE MIR -6 256 78 553 320 44 16 chr1 66670984 66671234 -175993119 + MIR SINE MIR 6 262 0 387 0 0 0 chr1 66672518 66672561 -175991792 + (TA)n Simple_repeat Simple_repeat 2 44 0 590 262 86 49 chr1 66672703 66672947 -175991406 + MIR SINE MIR 8 260 -2 198 71 0 0 chr1 66673053 66673081 -175991272 + (TG)n Simple_repeat Simple_repeat 2 29 0 352 324 19 63 chr1 66673353 66673560 -175990793 + MIR SINE MIR 20 217 -45 371 297 84 0 chr1 66673707 66673862 -175990491 - L2 LINE L2 -939 2375 2208 191 237 34 51 chr1 66674203 66674262 -175990091 - MIR SINE MIR -57 151 94 180 276 35 0 chr1 66675098 66675156 -175989197 - MIR SINE MIR -64 144 85 196 344 25 51 chr1 66675386 66675543 -175988810 + L2 LINE L2 3133 3285 -28 195 42 0 0 chr1 66675590 66675614 -175988739 + (AACTG)n Simple_repeat Simple_repeat 1 24 0 236 277 0 0 chr1 66675841 66675906 -175988447 + MIR SINE MIR 197 261 -1 1107 119 0 7 chr1 66676225 66676376 -175987977 + AluY SINE Alu 1 150 -161 572 81 61 0 chr1 66676483 66676582 -175987771 + AluSg/x SINE Alu 192 296 -14 8041 69 11 10 chr1 66676933 66678003 -175986350 - MER11C LTR ERVK 0 1071 1 206 347 149 29 chr1 66678096 66678439 -175985914 + L2 LINE L2 2804 3187 -85 2010 104 59 11 chr1 66678665 66678952 -175985401 - AluY SINE Alu -10 301 1 25 0 0 0 chr1 66678955 66678980 -175985373 + AT_rich Low_complexity Low_complexity 1 25 0 2015 156 0 0 chr1 66678980 66679275 -175985078 - AluSx SINE Alu -17 295 1 479 348 70 17 chr1 66679577 66679807 -175984546 + MIR SINE MIR 8 249 -13 350 314 36 70 chr1 66679940 66680172 -175984181 + MIR SINE MIR 5 226 -36 230 208 0 125 chr1 66680547 66680619 -175983734 + L2 LINE L2 3250 3312 -1 470 375 13 0 chr1 66681378 66681530 -175982823 - L2 LINE L2 -2 3270 3117 269 357 10 0 chr1 66681633 66681731 -175982622 - L2 LINE L2 -1 3312 3214 464 365 143 17 chr1 66682384 66682861 -175981492 + L2 LINE L2 2413 2949 -365 321 254 114 59 chr1 66683106 66683342 -175981011 + LTR16A1 LTR ERVL 209 457 0 279 351 81 9 chr1 66683498 66683609 -175980744 + L2 LINE L2 3153 3271 -1 232 224 0 0 chr1 66683744 66683793 -175980560 + L2 LINE L2 3265 3313 0 182 152 0 87 chr1 66684679 66684725 -175979628 - L2 LINE L2 -1 3312 3271 608 238 26 110 chr1 66684919 66685146 -175979207 + MIR SINE MIR 6 213 -49 2318 93 3 10 chr1 66685175 66685475 -175978878 - AluSp SINE Alu -15 298 1 353 271 49 8 chr1 66685507 66685629 -175978724 + MIR SINE MIR 71 197 -65 279 314 161 17 chr1 66685770 66685888 -175978465 - L2 LINE L2 -4 3268 3134 195 258 81 0 chr1 66685982 66686044 -175978309 - MIR SINE MIR -61 147 81 242 285 195 32 chr1 66686232 66686355 -175977998 - MIR SINE MIR -48 214 72 504 284 84 37 chr1 66687023 66687238 -175977115 - MIR SINE MIR -35 227 3 1014 32 0 0 chr1 66687721 66687844 -175976509 - L1PA5 LINE L1 0 6154 6032 463 276 138 17 chr1 66688446 66688678 -175975675 + MER57A LTR ERV1 144 403 0 783 244 5 36 chr1 66688884 66689077 -175975276 - MER5A DNA MER1_type -2 187 1 382 379 97 0 chr1 66689077 66689283 -175975070 + MIR SINE MIR 32 257 -5 397 335 38 13 chr1 66689460 66689618 -175974735 - MER5B DNA MER1_type -16 162 1 668 201 45 50 chr1 66689660 66689839 -175974514 + MER5B DNA MER1_type 1 178 0 186 305 61 0 chr1 66690238 66690320 -175974033 - MIR SINE MIR -108 154 68 1410 191 2 19 chr1 66692458 66692838 -175971515 - MLT2B1 LTR ERVL -53 462 1 1469 134 20 12 chr1 66692838 66693092 -175971261 - ERVL-B1 LTR ERVL -7 5757 5502 425 101 77 18 chr1 66693096 66693265 -175971088 + (TA)n Simple_repeat Simple_repeat 2 180 0 2428 152 42 3 chr1 66693368 66693849 -175970504 - ERVL-B1 LTR ERVL -273 5491 4964 194 225 0 0 chr1 66693863 66693903 -175970450 - L2 LINE L2 -7 3265 3226 1274 124 40 0 chr1 66694035 66694237 -175970116 - ERVL-B1 LTR ERVL -789 4975 4766 1513 171 72 54 chr1 66694247 66694332 -175970021 - MLT2B1 LTR ERVL -178 342 260 2073 126 13 0 chr1 66694332 66694633 -175969720 + AluY SINE Alu 1 305 -6 1513 171 72 54 chr1 66694633 66694881 -175969472 - MLT2B1 LTR ERVL -260 260 3 213 287 64 21 chr1 66695438 66695532 -175968821 + L3 LINE CR1 400 497 -1080 189 325 63 32 chr1 66695712 66695838 -175968515 + L3 LINE CR1 673 802 -775 2656 234 32 19 chr1 66696209 66697004 -175967349 - L1MEc LINE L1 -3282 2933 2173 1020 275 74 61 chr1 66697011 66697766 -175966587 - L1MEc LINE L1 -4874 1341 752 2366 96 0 3 chr1 66697766 66698069 -175966284 - AluY SINE Alu -9 302 1 1020 275 74 61 chr1 66698069 66698328 -175966025 - L1MEc LINE L1 -5463 752 498 9530 186 55 44 chr1 66698785 66699174 -175965179 + L1MC1 LINE L1 3 386 -6040 2313 103 26 63 chr1 66699174 66699552 -175964801 - THE1B LTR MaLR 0 364 1 11659 94 8 1 chr1 66699552 66701122 -175963231 - THE1B-int LTR MaLR 0 1580 1 1860 171 73 14 chr1 66701122 66701466 -175962887 - THE1B LTR MaLR 0 364 1 9530 186 55 44 chr1 66701466 66702901 -175961452 + L1MC1 LINE L1 386 1866 -4560 2385 45 19 3 chr1 66702901 66703209 -175961144 - L1PA4 LINE L1 0 6155 5843 9530 186 55 44 chr1 66703209 66703769 -175960584 + L1MC1 LINE L1 1866 2418 -4008 10251 214 30 38 chr1 66703838 66705684 -175958669 + L1MC1 LINE L1 2424 4285 -2328 2437 127 58 34 chr1 66705684 66706100 -175958253 + MSTB LTR MaLR 1 426 0 10251 214 30 38 chr1 66706100 66707303 -175957050 + L1MC1 LINE L1 4285 5419 -1194 1504 212 83 21 chr1 66707303 66707676 -175956677 + MSTD LTR MaLR 1 396 0 10251 214 30 38 chr1 66707676 66708860 -175955493 + L1MC1 LINE L1 5419 6612 -1 299 272 43 11 chr1 66708918 66709010 -175955343 + MIR SINE MIR 79 173 -89 411 244 96 9 chr1 66709934 66710049 -175954304 - MIR3 SINE MIR -45 163 39 217 386 75 21 chr1 66710229 66710511 -175953842 - L2 LINE L2 -167 3105 2809 366 316 85 17 chr1 66711267 66711444 -175952909 + MIR SINE MIR 30 218 -44 1983 159 88 25 chr1 66711695 66712103 -175952250 - Tigger2a DNA MER2_type 0 434 1 185 140 0 120 chr1 66712325 66712375 -175951978 - L3 LINE CR1 -788 789 746 889 344 76 9 chr1 66712527 66712977 -175951376 - L3 LINE CR1 -2 1575 1096 8419 233 67 27 chr1 66713281 66714872 -175949481 - L1MDa LINE L1 -2302 4238 2712 2974 101 19 33 chr1 66714872 66715356 -175948997 - L1PA16 LINE L1 -5 6161 5685 8419 233 67 27 chr1 66715356 66715444 -175948909 - L1MDa LINE L1 -3828 2712 2629 180 0 0 0 chr1 66715444 66715464 -175948889 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 8419 233 67 27 chr1 66715464 66717123 -175947230 - L1MDa LINE L1 -3911 2629 692 204 97 0 0 chr1 66717123 66717154 -175947199 + (TG)n Simple_repeat Simple_repeat 1 31 0 8419 233 67 27 chr1 66717154 66717801 -175946552 - L1MDa LINE L1 -5848 692 72 2466 212 31 79 chr1 66717886 66718788 -175945565 + L1M4 LINE L1 4226 5084 -1062 493 239 86 49 chr1 66719003 66719329 -175945024 + HAL1 LINE L1 2015 2352 -155 544 225 197 26 chr1 66719845 66720039 -175944314 - MIR SINE MIR -4 258 34 258 343 74 9 chr1 66720434 66720542 -175943811 + L2 LINE L2 3199 3313 0 280 268 56 45 chr1 66720552 66720731 -175943622 - L1ME LINE L1 -324 5797 5617 660 303 97 22 chr1 66720796 66721047 -175943306 - MLT1J1 LTR MaLR 0 446 150 2805 76 19 3 chr1 66721047 66721414 -175942939 + THE1C LTR MaLR 3 375 0 660 303 97 22 chr1 66721414 66721575 -175942778 - MLT1J1 LTR MaLR -296 150 3 437 0 19 0 chr1 66721711 66721764 -175942589 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 25 83 0 0 chr1 66722279 66722339 -175942014 + AT_rich Low_complexity Low_complexity 1 60 0 348 232 37 0 chr1 66722626 66722708 -175941645 - MLT1J LTR MaLR 0 511 427 1940 143 39 25 chr1 66722708 66723071 -175941282 - THE1C LTR MaLR -7 368 1 379 312 65 93 chr1 66723072 66723489 -175940864 - MLT1J LTR MaLR -80 431 27 7317 36 0 0 chr1 66723490 66724359 -175939994 - L1PA2 LINE L1 -1833 4313 3445 8878 30 0 2 chr1 66724359 66726180 -175938173 + L1PA2 LINE L1 4330 6148 -7 243 0 0 0 chr1 66726184 66726211 -175938142 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1960 130 0 3 chr1 66726337 66726643 -175937710 - AluSq SINE Alu 0 305 1 238 250 148 33 chr1 66726661 66726905 -175937448 - L1MEd LINE L1 -4955 1164 893 459 250 0 0 chr1 66726962 66727078 -175937275 - L1MC3 LINE L1 0 7785 7670 211 419 76 0 chr1 66728045 66728150 -175936203 + L2 LINE L2 3150 3262 -10 490 335 107 10 chr1 66728984 66729190 -175935163 + MIR SINE MIR 30 255 -7 185 433 0 0 chr1 66729195 66729285 -175935068 + MIR SINE MIR 54 143 -65 222 284 14 0 chr1 66729548 66729622 -175934731 + L3b LINE CR1 1147 1221 -362 24 0 0 0 chr1 66729795 66729819 -175934534 + AT_rich Low_complexity Low_complexity 1 24 0 427 349 89 27 chr1 66729865 66730157 -175934196 + L3b LINE CR1 1271 1580 -3 807 230 55 35 chr1 66730639 66730839 -175933514 + MER63A DNA MER1_type 2 205 -5 210 313 0 30 chr1 66730960 66731027 -175933326 + L2 LINE L2 3206 3270 -2 201 132 0 0 chr1 66731269 66731307 -175933046 + (T)n Simple_repeat Simple_repeat 1 38 0 615 232 207 51 chr1 66731312 66731665 -175932688 + MLT1L LTR MaLR 202 609 -6 17329 31 0 8 chr1 66731958 66734083 -175930270 - L1PA3 LINE L1 -1077 5069 2963 7734 24 0 0 chr1 66734083 66735164 -175929189 + L1PA3 LINE L1 5075 6155 0 192 77 0 0 chr1 66735276 66735302 -175929051 + (TC)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr1 66735302 66735330 -175929023 + (TG)n Simple_repeat Simple_repeat 1 28 0 369 0 0 0 chr1 66735724 66735765 -175928588 + (TTA)n Simple_repeat Simple_repeat 2 42 0 355 313 135 6 chr1 66736559 66736722 -175927631 - MIR SINE MIR -12 250 67 197 139 23 0 chr1 66736767 66736810 -175927543 + A-rich Low_complexity Low_complexity 6 49 0 2184 95 7 30 chr1 66737099 66737404 -175926949 + AluSq SINE Alu 1 298 -15 261 329 0 40 chr1 66739102 66739301 -175925052 + (CATA)n Simple_repeat Simple_repeat 1 190 0 210 143 0 0 chr1 66739304 66739339 -175925014 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 614 160 0 25 chr1 66739594 66739713 -175924640 - FRAM SINE Alu -3 173 58 626 347 61 48 chr1 66740084 66740703 -175923650 + L2 LINE L2 2139 2765 -549 1150 287 11 23 chr1 66740740 66741092 -175923261 + LTR33 LTR ERVL 174 521 0 759 166 6 12 chr1 66741526 66741695 -175922658 + CT-rich Low_complexity Low_complexity 4 171 0 415 376 31 0 chr1 66741731 66741925 -175922428 - MIR SINE MIR -56 206 7 283 373 19 12 chr1 66742722 66742883 -175921470 - MER5B DNA MER1_type 0 178 17 469 135 0 52 chr1 66742893 66742989 -175921364 - MLT1I LTR MaLR -10 399 309 746 179 84 26 chr1 66743027 66743217 -175921136 - MLT1I LTR MaLR -199 210 10 27 0 0 0 chr1 66744064 66744091 -175920262 + AT_rich Low_complexity Low_complexity 1 27 0 461 274 51 46 chr1 66744204 66744379 -175919974 + MIR SINE MIR 12 187 -75 21 57 0 0 chr1 66745245 66745280 -175919073 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr1 66745549 66745584 -175918769 + (TG)n Simple_repeat Simple_repeat 2 36 0 408 269 34 8 chr1 66747062 66747181 -175917172 + MIR SINE MIR 69 190 -72 549 255 94 26 chr1 66748141 66748333 -175916020 + MER63A DNA MER1_type 5 209 -1 695 333 25 0 chr1 66748512 66748749 -175915604 - MIR SINE MIR -10 252 10 195 42 0 0 chr1 66749086 66749110 -175915243 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 189 196 0 0 chr1 66751106 66751157 -175913196 + (TAA)n Simple_repeat Simple_repeat 3 53 0 2250 233 59 116 chr1 66751655 66752702 -175911651 + L1ME2 LINE L1 4057 5044 -1102 306 296 50 89 chr1 66752742 66752921 -175911432 - L2 LINE L2 -268 3045 2874 2750 215 41 90 chr1 66752923 66754084 -175910269 + L1ME2 LINE L1 5061 6155 -9 1901 184 34 6 chr1 66754190 66754543 -175909810 - MLT1A1 LTR MaLR 0 365 3 3568 195 77 82 chr1 66754553 66755226 -175909127 - MLT1A1-int LTR MaLR -10 1361 687 2215 99 11 0 chr1 66755226 66755508 -175908845 + AluSx SINE Alu 1 285 -27 3568 195 77 82 chr1 66755508 66755782 -175908571 - MLT1A1-int LTR MaLR -684 687 413 7229 48 0 3 chr1 66755782 66756880 -175907473 - L1PA5 LINE L1 0 6154 5057 3568 195 77 82 chr1 66756880 66757202 -175907151 - MLT1A1-int LTR MaLR -958 413 30 396 240 65 113 chr1 66757202 66757486 -175906867 + MLT1L LTR MaLR 244 509 -2 28 0 0 0 chr1 66758171 66758199 -175906154 + AT_rich Low_complexity Low_complexity 1 28 0 652 259 17 29 chr1 66758240 66758414 -175905939 - MIR3 SINE MIR -3 205 34 334 274 20 20 chr1 66758470 66758616 -175905737 + Charlie7 DNA MER1_type 2465 2610 -2 1759 182 0 10 chr1 66758669 66758965 -175905388 - AluJb SINE Alu -19 293 1 294 339 59 3 chr1 66758986 66759172 -175905181 - L2 LINE L2 -19 3253 2999 246 376 67 13 chr1 66759711 66759860 -175904493 + L2 LINE L2 3116 3272 0 405 219 50 62 chr1 66760059 66760219 -175904134 + L2 LINE L2 3152 3309 -4 203 336 18 9 chr1 66760308 66760421 -175903932 - MIR SINE MIR -118 144 31 925 282 77 80 chr1 66761336 66761707 -175902646 - L2 LINE L2 -271 3042 2660 336 145 0 0 chr1 66761707 66761769 -175902584 + L1MA7 LINE L1 6230 6291 0 925 282 77 80 chr1 66761769 66761997 -175902356 - L2 LINE L2 -653 2660 2433 1654 122 4 0 chr1 66761997 66762234 -175902119 - THE1A LTR MaLR 0 355 118 18699 66 10 0 chr1 66762235 66764569 -175899784 + HERVL-A1 LTR ERVL 3298 5654 0 3038 100 3 0 chr1 66764569 66764977 -175899376 + MLT2A1 LTR ERVL 1 480 -40 276 167 0 0 chr1 66764982 66765054 -175899299 + (TA)n Simple_repeat Simple_repeat 1 72 0 291 40 140 0 chr1 66765057 66765107 -175899246 + MLT2A1 LTR ERVL 388 444 0 559 293 122 41 chr1 66765119 66765389 -175898964 - L2 LINE L2 -904 2410 2119 303 329 33 26 chr1 66765535 66765687 -175898666 + MIR SINE MIR 43 195 -67 323 227 136 27 chr1 66765779 66765889 -175898464 + L2 LINE L2 3191 3312 -1 2355 29 0 0 chr1 66766232 66766510 -175897843 + L1PA2 LINE L1 5878 6155 0 1717 199 12 40 chr1 66767074 66767475 -175896878 - MLT1B LTR MaLR 0 390 1 391 291 56 56 chr1 66767607 66767803 -175896550 + MIR SINE MIR 9 204 -58 218 138 69 0 chr1 66767805 66767863 -175896490 + (TA)n Simple_repeat Simple_repeat 2 63 0 288 307 0 78 chr1 66768495 66768648 -175895705 - MIR SINE MIR -60 202 62 382 289 191 13 chr1 66768970 66769122 -175895231 + MIR SINE MIR 14 192 -70 251 277 0 0 chr1 66769279 66769344 -175895009 + (ATG)n Simple_repeat Simple_repeat 2 66 0 800 290 92 35 chr1 66769687 66770121 -175894232 + L3 LINE CR1 977 1435 -142 22 35 0 0 chr1 66770438 66770467 -175893886 + AT_rich Low_complexity Low_complexity 1 29 0 418 316 70 11 chr1 66771517 66771704 -175892649 - MIR SINE MIR -58 204 7 436 285 36 12 chr1 66771768 66771933 -175892420 + MIR SINE MIR 93 261 -1 446 302 20 7 chr1 66772423 66772572 -175891781 + L3 LINE CR1 1426 1576 -1 263 264 0 0 chr1 66773362 66773434 -175890919 + A-rich Low_complexity Low_complexity 1 72 0 30 59 0 0 chr1 66773526 66773577 -175890776 + AT_rich Low_complexity Low_complexity 1 51 0 284 246 115 49 chr1 66773982 66774104 -175890249 - MIR SINE MIR -110 152 23 1791 178 0 0 chr1 66774293 66774597 -175889756 - AluJb SINE Alu -8 304 1 4874 157 6 21 chr1 66775119 66775924 -175888429 - MER54B LTR ERVL 0 793 1 192 303 30 30 chr1 66776459 66776525 -175887828 + L2 LINE L2 3201 3266 -6 238 309 0 49 chr1 66776538 66776619 -175887734 - MIR SINE MIR -100 108 32 933 255 9 9 chr1 66777098 66777180 -175887173 + MER20 DNA MER1_type 2 83 -136 1537 178 105 15 chr1 66777180 66777522 -175886831 - MLT1A2 LTR MaLR 0 374 2 933 255 9 9 chr1 66777522 66777651 -175886702 + MER20 DNA MER1_type 82 213 -6 239 327 36 45 chr1 66777660 66777770 -175886583 - L3 LINE CR1 -44 1533 1425 224 336 61 38 chr1 66777860 66777991 -175886362 + L2 LINE L2 3180 3313 0 399 376 20 51 chr1 66778812 66779067 -175885286 + L2 LINE L2 2945 3191 -81 515 286 55 22 chr1 66779279 66779461 -175884892 - MIR SINE MIR 0 262 75 434 292 104 70 chr1 66779643 66779999 -175884354 + LTR33 LTR ERVL 3 370 -151 271 248 86 38 chr1 66780093 66780198 -175884155 + MIR SINE MIR 107 216 -46 286 303 13 0 chr1 66780260 66780336 -175884017 - L2 LINE L2 -5 3267 3191 200 271 157 0 chr1 66780852 66780922 -175883431 - L2 LINE L2 -10 3262 3182 742 225 34 38 chr1 66781191 66781400 -175882953 + MER3 DNA MER1_type 1 208 -1 211 371 15 56 chr1 66781981 66782178 -175882175 + L2 LINE L2 2872 3060 -212 378 0 0 0 chr1 66782699 66782741 -175881612 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 7144 26 0 0 chr1 66782741 66783572 -175880781 - L1PA3 LINE L1 -6 6149 5319 271 341 0 49 chr1 66783595 66783718 -175880635 + L2 LINE L2 3184 3300 -13 24 0 0 0 chr1 66783718 66783742 -175880611 + AT_rich Low_complexity Low_complexity 1 24 0 1584 235 95 23 chr1 66785749 66786140 -175878213 + MLT1H LTR MaLR 16 434 -115 308 269 0 43 chr1 66786142 66786235 -175878118 + L1MC4 LINE L1 6614 6702 -1340 332 250 11 33 chr1 66786236 66786328 -175878025 + L1MC4 LINE L1 6614 6703 -1339 307 261 0 22 chr1 66786285 66786377 -175877976 - L1MC4 LINE L1 -1339 6703 6614 * 442 115 0 77 chr1 66786377 66786507 -175877846 + (TATG)n Simple_repeat Simple_repeat 2 121 0 207 129 0 0 chr1 66786507 66786538 -175877815 + MER5A DNA MER1_type 157 187 -2 303 93 0 0 chr1 66786553 66786596 -175877757 + (TATG)n Simple_repeat Simple_repeat 2 44 0 216 237 0 0 chr1 66786713 66786751 -175877602 + (CG)n Simple_repeat Simple_repeat 1 38 0 749 233 44 6 chr1 66786789 66786969 -175877384 - MER5A DNA MER1_type -2 187 1 229 179 18 36 chr1 66786969 66787020 -175877333 + MLT1H LTR MaLR 501 550 -5 190 305 157 40 chr1 66787460 66787709 -175876644 - L2 LINE L2 -2239 1075 798 * 199 274 65 0 chr1 66787689 66787751 -175876602 - MER5B DNA MER1_type -102 76 11 278 387 42 0 chr1 66788157 66788276 -175876077 + L2 LINE L2 3141 3264 -8 23 0 0 0 chr1 66789020 66789043 -175875310 + AT_rich Low_complexity Low_complexity 1 23 0 455 308 93 9 chr1 66790201 66790415 -175873938 - MIR SINE MIR -11 251 20 214 209 119 15 chr1 66790436 66790503 -175873850 + MIR3 SINE MIR 131 204 -4 202 314 117 22 chr1 66791051 66791188 -175873165 + MIR SINE MIR 81 230 -32 245 354 97 46 chr1 66791337 66791532 -175872821 - L2 LINE L2 -2 3270 3066 208 392 24 24 chr1 66791665 66791790 -175872563 + MIR SINE MIR 12 137 -71 427 294 71 16 chr1 66792028 66792212 -175872141 - MER117 DNA MER1_type -1 196 3 427 229 45 55 chr1 66792615 66792701 -175871652 - L1M4 LINE L1 -1716 4430 4345 1458 205 40 74 chr1 66792701 66793105 -175871248 - MLT1B LTR MaLR 0 390 1 427 229 45 55 chr1 66793105 66793139 -175871214 - L1M4 LINE L1 -1801 4345 4312 1504 179 23 57 chr1 66793139 66793395 -175870958 + MER44D DNA MER2_type 1 264 -2227 2232 114 0 0 chr1 66793395 66793701 -175870652 + AluSx SINE Alu 1 306 -6 1504 179 23 57 chr1 66793701 66793795 -175870558 + MER44D DNA MER2_type 264 609 0 427 229 45 55 chr1 66793795 66793874 -175870479 - L1M4 LINE L1 -1834 4312 4232 2053 31 0 0 chr1 66793874 66794131 -175870222 - L1HS LINE L1 -815 5331 5075 * 7234 10 0 0 chr1 66794130 66794945 -175869408 + L1HS LINE L1 5340 6154 -1 744 268 71 0 chr1 66794962 66795201 -175869152 - L1M4 LINE L1 -1904 4242 3987 290 200 137 11 chr1 66795245 66795340 -175869013 + L2 LINE L2 3199 3305 -8 195 42 0 0 chr1 66795522 66795546 -175868807 + (TG)n Simple_repeat Simple_repeat 1 24 0 365 209 70 26 chr1 66796331 66796446 -175867907 - MIR3 SINE MIR -41 167 48 435 299 16 33 chr1 66796552 66796736 -175867617 + MIR SINE MIR 21 201 -61 231 261 0 0 chr1 66796766 66796812 -175867541 - L2 LINE L2 -9 3304 3259 2317 229 138 30 chr1 66797493 66798307 -175866046 + MER63D DNA MER1_type 1 902 -159 238 93 70 0 chr1 66798311 66798354 -175865999 - L1MA4A LINE L1 -6 6297 6252 548 322 22 48 chr1 66798553 66798783 -175865570 - MIR SINE MIR -15 247 24 208 330 60 50 chr1 66798835 66798935 -175865418 + MIR SINE MIR 21 121 -87 264 292 49 56 chr1 66799863 66800007 -175864346 + L2 LINE L2 3171 3313 0 259 271 53 29 chr1 66800008 66800176 -175864177 - MIR3 SINE MIR -63 145 2 249 33 0 0 chr1 66800381 66800411 -175863942 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 211 355 0 50 chr1 66800979 66801100 -175863253 + MIR SINE MIR 58 172 -90 * 600 280 103 5 chr1 66801076 66801290 -175863063 - MIR SINE MIR 0 262 28 185 316 101 38 chr1 66801403 66801561 -175862792 + MIR SINE MIR 67 234 -28 424 90 20 40 chr1 66801937 66802037 -175862316 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 857 262 157 0 chr1 66802424 66802768 -175861585 + MLT1J2 LTR MaLR 9 406 -44 1770 158 79 20 chr1 66802781 66803135 -175861218 + THE1C LTR MaLR 1 375 0 214 158 0 0 chr1 66803300 66803338 -175861015 + CT-rich Low_complexity Low_complexity 3 40 0 561 360 86 23 chr1 66803805 66804247 -175860106 - L2 LINE L2 -2 3311 2842 368 262 35 28 chr1 66804347 66804488 -175859865 - MIR3 SINE MIR -3 205 64 339 295 42 48 chr1 66804612 66804756 -175859597 + MER5A DNA MER1_type 1 145 -44 2727 19 0 10 chr1 66804756 66805070 -175859283 + AluYb8 SINE Alu 1 311 -7 339 295 42 48 chr1 66805070 66805091 -175859262 + MER5A DNA MER1_type 145 165 -24 291 311 119 33 chr1 66805115 66805266 -175859087 + MIR SINE MIR 10 135 -73 21 0 0 0 chr1 66805992 66806013 -175858340 + AT_rich Low_complexity Low_complexity 1 21 0 204 363 0 4 chr1 66806217 66806321 -175858032 + MIR SINE MIR 10 112 -96 1955 165 0 0 chr1 66806467 66806758 -175857595 - AluJb SINE Alu -21 291 1 1367 239 108 18 chr1 66808630 66809074 -175855279 + L1MD1 LINE L1 5598 6081 -161 194 208 0 75 chr1 66809104 66809157 -175855196 + L2 LINE L2 3256 3304 -9 201 138 0 0 chr1 66809570 66809599 -175854754 + (CATA)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr1 66809643 66809674 -175854679 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 66810111 66810133 -175854220 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr1 66810727 66810761 -175853592 + (TG)n Simple_repeat Simple_repeat 1 34 0 589 214 173 6 chr1 66810761 66810893 -175853460 - AluJb SINE Alu -31 281 114 189 0 0 0 chr1 66810893 66810914 -175853439 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 589 214 173 6 chr1 66810914 66810949 -175853404 - AluJb SINE Alu -198 114 86 914 213 29 45 chr1 66810958 66811083 -175853270 - L1MB4 LINE L1 -1 6179 6058 2073 122 0 10 chr1 66811083 66811378 -175852975 - AluSx SINE Alu -20 292 1 914 213 29 45 chr1 66811378 66811496 -175852857 - L1MB4 LINE L1 -122 6058 5940 2094 180 70 5 chr1 66811992 66812392 -175851961 + MSTB LTR MaLR 1 426 0 1607 206 51 16 chr1 66812681 66813075 -175851278 + MLT1C LTR MaLR 1 331 -59 1715 121 0 12 chr1 66813077 66813333 -175851020 - AluSg1 SINE Alu -1 308 56 1058 249 43 15 chr1 66813450 66813775 -175850578 - L1MB4 LINE L1 -358 5808 5475 378 341 23 37 chr1 66814092 66814306 -175850047 - MIR SINE MIR -24 238 28 684 281 107 5 chr1 66814750 66814974 -175849379 + MLT1L LTR MaLR 365 611 -4 355 366 40 6 chr1 66814993 66815168 -175849185 - MIR SINE MIR -35 227 47 373 50 33 0 chr1 66815307 66815367 -175848986 + (TA)n Simple_repeat Simple_repeat 2 63 0 295 374 0 19 chr1 66816987 66817061 -175847292 - L2 LINE L2 -5 3267 3194 1863 172 37 6 chr1 66817061 66817415 -175846938 + MLT1A1 LTR MaLR 1 365 0 295 374 0 19 chr1 66817415 66817447 -175846906 - L2 LINE L2 -78 3194 3163 1591 192 19 0 chr1 66817474 66817745 -175846608 - AluJo SINE Alu -30 282 7 229 300 130 0 chr1 66818239 66818339 -175846014 + MIR3 SINE MIR 72 184 -24 1287 195 13 29 chr1 66818963 66819270 -175845083 - L1MB7 LINE L1 -2 6680 6379 2674 234 98 1 chr1 66819272 66820047 -175844306 - L1MB7 LINE L1 -1332 5312 4463 384 22 0 0 chr1 66820047 66820092 -175844261 + (TG)n Simple_repeat Simple_repeat 2 46 0 5149 221 95 66 chr1 66820104 66823127 -175841226 - L1MB7 LINE L1 -3433 3211 16 1939 155 13 10 chr1 66823728 66823912 -175840441 - AluJb SINE Alu 0 312 125 528 16 0 0 chr1 66823912 66823973 -175840380 + (TG)n Simple_repeat Simple_repeat 2 62 0 1939 155 13 10 chr1 66823973 66824098 -175840255 - AluJb SINE Alu -187 125 2 22 35 0 0 chr1 66824101 66824130 -175840223 + AT_rich Low_complexity Low_complexity 1 29 0 198 355 41 25 chr1 66824249 66824370 -175839983 + MIR3 SINE MIR 62 184 -24 419 125 14 0 chr1 66824541 66824613 -175839740 + (CA)n Simple_repeat Simple_repeat 2 74 0 227 213 21 0 chr1 66824613 66824660 -175839693 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 1746 178 14 3 chr1 66824679 66824971 -175839382 - AluJo SINE Alu -14 298 4 442 309 6 11 chr1 66825860 66826041 -175838312 + L1ME LINE L1 1605 1784 -4612 1782 240 87 35 chr1 66826045 66827213 -175837140 + L1ME LINE L1 1834 3028 -3187 504 265 97 21 chr1 66827225 66827463 -175836890 + L1ME LINE L1 5582 5837 -396 10964 204 67 20 chr1 66827475 66830976 -175833377 + L1MB3 LINE L1 21 3720 -2662 1184 219 21 35 chr1 66830976 66831264 -175833089 + AluJo SINE Alu 5 288 -14 10964 204 67 20 chr1 66831264 66831588 -175832765 + L1MB3 LINE L1 3720 4027 -2355 966 178 6 23 chr1 66831591 66831765 -175832588 + MER6 DNA MER2_type 39 209 -656 281 47 23 0 chr1 66831765 66831808 -175832545 + (TG)n Simple_repeat Simple_repeat 2 45 0 3375 212 38 35 chr1 66831859 66832644 -175831709 + L1MB3 LINE L1 4643 5424 -995 2183 124 0 0 chr1 66832644 66832942 -175831411 - AluSq SINE Alu -15 298 1 3375 212 38 35 chr1 66832942 66833236 -175831117 + L1MB3 LINE L1 5424 5724 -695 212 0 36 0 chr1 66833236 66833264 -175831089 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3375 212 38 35 chr1 66833264 66833465 -175830888 + L1MB3 LINE L1 5724 5923 -496 2224 154 53 22 chr1 66833513 66833641 -175830712 + L1MB3 LINE L1 5904 6027 -392 329 62 21 0 chr1 66833641 66833689 -175830664 + (CA)n Simple_repeat Simple_repeat 2 50 0 2224 154 53 22 chr1 66833689 66834053 -175830300 + L1MB3 LINE L1 6027 6411 -8 299 22 0 44 chr1 66834827 66834872 -175829481 + (ATG)n Simple_repeat Simple_repeat 3 45 0 794 59 0 0 chr1 66835425 66835527 -175828826 - L1PA11 LINE L1 -370 5793 5692 2741 87 0 11 chr1 66835529 66835907 -175828446 + L1PA11 LINE L1 5798 6171 -3 433 296 148 15 chr1 66836037 66836240 -175828113 + MIR SINE MIR 21 250 -12 187 377 50 38 chr1 66836451 66836690 -175827663 + L2 LINE L2 2606 2847 -467 21 57 0 0 chr1 66837100 66837135 -175827218 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 66837561 66837589 -175826764 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 66837870 66837894 -175826459 + AT_rich Low_complexity Low_complexity 1 24 0 262 268 42 63 chr1 66837980 66838122 -175826231 + MIR SINE MIR 81 219 -43 30 0 0 0 chr1 66839070 66839100 -175825253 + AT_rich Low_complexity Low_complexity 1 30 0 247 331 78 81 chr1 66839100 66839384 -175824969 - L2 LINE L2 -55 3217 2935 279 358 126 29 chr1 66839442 66839822 -175824531 - L2 LINE L2 -461 2853 2437 376 330 18 0 chr1 66839874 66839986 -175824367 + L2 LINE L2 3200 3313 0 272 299 9 28 chr1 66839990 66840097 -175824256 - L2 LINE L2 -915 2399 2295 182 217 0 33 chr1 66840098 66840158 -175824195 + (CGTG)n Simple_repeat Simple_repeat 1 58 0 302 257 14 0 chr1 66840752 66840826 -175823527 + MER117 DNA MER1_type 118 192 -5 444 355 64 9 chr1 66840900 66841120 -175823233 - L3 LINE CR1 -60 1517 1286 204 333 128 20 chr1 66841377 66841479 -175822874 - L2 LINE L2 -1 3312 3200 24361 95 12 3 chr1 66841848 66842325 -175822028 - L1PA7 LINE L1 -9 6460 5989 2511 63 3 0 chr1 66842325 66842628 -175821725 - AluSp SINE Alu -9 304 1 24361 95 12 3 chr1 66842628 66847124 -175817229 - L1PA7 LINE L1 -480 5989 1462 23 33 0 0 chr1 66847502 66847532 -175816821 + AT_rich Low_complexity Low_complexity 1 30 0 288 296 30 30 chr1 66847989 66848124 -175816229 + MLT1I LTR MaLR 85 219 -190 464 349 16 11 chr1 66849147 66849336 -175815017 + MIR3 SINE MIR 16 205 -3 233 253 91 143 chr1 66849357 66849511 -175814842 + MIR3 SINE MIR 60 205 -3 641 281 66 60 chr1 66849791 66850228 -175814125 - MLT1K LTR MaLR -47 541 102 385 268 32 49 chr1 66850424 66850547 -175813806 + L2 LINE L2 3193 3313 0 * 401 265 20 0 chr1 66850544 66850646 -175813707 + MIR SINE MIR 151 254 -8 800 302 48 0 chr1 66850979 66851227 -175813126 - MIR SINE MIR 0 262 3 1670 186 56 58 chr1 66851845 66852344 -175812009 + LTR1B LTR ERV1 1 498 -328 209 255 43 0 chr1 66853496 66853543 -175810810 + L2 LINE L2 3204 3252 -20 189 107 0 0 chr1 66854030 66854058 -175810295 + (CACTC)n Simple_repeat Simple_repeat 1 28 0 679 163 81 91 chr1 66854896 66855024 -175809329 + MER3 DNA MER1_type 2 129 -80 2356 79 3 10 chr1 66855024 66855327 -175809026 - AluY SINE Alu -10 301 1 679 163 81 91 chr1 66855327 66855407 -175808946 + MER3 DNA MER1_type 129 208 -1 2317 105 0 3 chr1 66855954 66856259 -175808094 + AluSx SINE Alu 1 304 -8 186 103 0 0 chr1 66856767 66856796 -175807557 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 585 301 31 21 chr1 66857447 66857640 -175806713 - MIR SINE MIR -10 252 58 182 216 0 0 chr1 66858023 66858060 -175806293 - MIR SINE MIR 0 262 226 240 333 97 11 chr1 66858088 66858181 -175806172 - MIR SINE MIR -90 118 23 311 282 59 0 chr1 66859766 66859851 -175804502 - MER5A DNA MER1_type -50 139 50 273 350 50 7 chr1 66860006 66860146 -175804207 - MIR SINE MIR -116 146 1 283 264 282 0 chr1 66860511 66860621 -175803732 - MIR SINE MIR -42 220 80 468 281 236 10 chr1 66860843 66861131 -175803222 - LTR16A LTR ERVL 0 450 98 277 179 200 11 chr1 66862381 66862476 -175801877 - L2 LINE L2 -11 3302 3190 222 320 0 39 chr1 66862613 66862691 -175801662 + L2 LINE L2 3239 3313 0 362 275 108 17 chr1 66862990 66863110 -175801243 - L2 LINE L2 -1 3271 3141 359 318 55 40 chr1 66863134 66863335 -175801018 - MIR SINE MIR -48 214 11 430 267 164 31 chr1 66863405 66863600 -175800753 + MIR SINE MIR 32 252 -10 285 330 0 19 chr1 66864391 66864494 -175799859 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 312 233 150 15 chr1 66864641 66864774 -175799579 - MIR SINE MIR -8 254 104 21 0 0 0 chr1 66865115 66865136 -175799217 + AT_rich Low_complexity Low_complexity 1 21 0 192 97 0 0 chr1 66865162 66865193 -175799160 + L2 LINE L2 3280 3310 -3 600 266 27 16 chr1 66865422 66865606 -175798747 - MLT1J2 LTR MaLR 0 450 265 500 323 48 26 chr1 66865841 66866071 -175798282 - MIR SINE MIR -12 250 10 1301 190 26 0 chr1 66866479 66866747 -175797606 + L1MB7 LINE L1 5910 6184 0 306 307 74 35 chr1 66867143 66867345 -175797008 + MIR SINE MIR 24 233 -29 186 207 207 0 chr1 66867334 66867392 -175796961 + L2 LINE L2 3244 3313 0 * 192 366 98 8 chr1 66867639 66867762 -175796591 + L2 LINE L2 2927 3060 -212 22 0 0 0 chr1 66868231 66868253 -175796100 + AT_rich Low_complexity Low_complexity 1 22 0 214 309 21 52 chr1 66868504 66868601 -175795752 - MIR SINE MIR -97 111 18 238 309 138 0 chr1 66869194 66869346 -175795007 - MIR SINE MIR -27 235 63 192 180 20 20 chr1 66869451 66869501 -175794852 - L2 LINE L2 0 3313 3264 535 253 143 72 chr1 66869902 66870006 -175794347 - MIR SINE MIR -8 254 159 1999 143 0 3 chr1 66870006 66870293 -175794060 - AluSx SINE Alu -26 286 1 535 253 143 72 chr1 66870293 66870425 -175793928 - MIR SINE MIR -103 159 1 335 358 47 27 chr1 66870435 66870583 -175793770 - L2 LINE L2 -21 3251 3101 1760 165 43 70 chr1 66871375 66871774 -175792579 + MLT1B LTR MaLR 3 390 0 246 105 0 0 chr1 66871809 66871847 -175792506 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 275 339 55 44 chr1 66871860 66872043 -175792310 - MIR SINE MIR -50 212 28 314 283 176 24 chr1 66873217 66873353 -175791000 + MIR3 SINE MIR 4 158 -61 450 284 130 19 chr1 66874031 66874246 -175790107 - MIR SINE MIR -1 261 23 7271 48 6 0 chr1 66874347 66875406 -175788947 - L1PA5 LINE L1 -11 6143 5083 659 44 0 0 chr1 66875406 66875496 -175788857 + L1PA5 LINE L1 4976 5065 -1081 192 125 0 0 chr1 66876530 66876562 -175787791 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 1978 101 4 14 chr1 66876605 66876882 -175787471 - AluSc SINE Alu 0 309 36 242 231 60 94 chr1 66876979 66877096 -175787257 + L2 LINE L2 3192 3304 -9 460 299 152 15 chr1 66877330 66877534 -175786819 - MIR SINE MIR -30 232 1 2276 106 0 0 chr1 66878976 66879279 -175785074 - AluY SINE Alu -8 303 1 658 236 81 29 chr1 66879701 66879875 -175784478 + MIR SINE MIR 8 190 -72 470 296 115 41 chr1 66879919 66880138 -175784215 - L1MC4a LINE L1 -1983 5825 5624 914 57 8 0 chr1 66880138 66880262 -175784091 - L1PA13 LINE L1 -3 6160 6036 470 296 115 41 chr1 66880262 66880484 -175783869 - L1MC4a LINE L1 -2184 5624 5351 373 63 51 13 chr1 66880834 66880913 -175783440 + (TA)n Simple_repeat Simple_repeat 2 83 0 23 117 0 0 chr1 66881601 66881729 -175782624 + AT_rich Low_complexity Low_complexity 1 128 0 2141 122 3 22 chr1 66881963 66882274 -175782079 - AluSq SINE Alu -8 305 1 526 374 40 22 chr1 66882466 66882744 -175781609 - L2 LINE L2 0 3272 2990 185 343 10 61 chr1 66883089 66883188 -175781165 - MIR SINE MIR -166 96 3 474 303 10 14 chr1 66884333 66884541 -175779812 + L1ME LINE L1 5306 5512 -654 440 223 69 64 chr1 66884557 66884745 -175779608 + MER58C DNA MER1_type 22 210 -5 225 277 59 0 chr1 66884771 66884872 -175779481 + L1ME LINE L1 5531 5637 -533 1291 172 27 54 chr1 66885047 66885379 -175778974 - MER33 DNA MER1_type -1 323 1 1880 157 10 0 chr1 66885660 66885953 -175778400 + AluSx SINE Alu 3 298 -14 280 344 104 26 chr1 66887340 66887570 -175776783 - MIR SINE MIR -14 248 1 245 278 46 46 chr1 66887601 66887709 -175776644 - MIR SINE MIR -50 212 105 2499 151 16 11 chr1 66887747 66888184 -175776169 - L1PA16 LINE L1 0 6166 5728 2005 56 42 7 chr1 66888184 66888469 -175775884 + MLT2A1 LTR ERVL 1 295 -149 408 378 111 0 chr1 66888481 66888896 -175775457 + L2 LINE L2 2838 3298 -15 22 0 0 0 chr1 66888926 66888948 -175775405 + AT_rich Low_complexity Low_complexity 1 22 0 2343 178 14 16 chr1 66889478 66889904 -175774449 + MSTB LTR MaLR 2 426 0 8552 189 27 2 chr1 66889904 66891515 -175772838 + MSTB-int LTR MaLR 1 1651 0 2153 191 17 17 chr1 66891516 66891930 -175772423 + MSTB LTR MaLR 13 426 0 213 358 11 21 chr1 66893116 66893211 -175771142 + L2 LINE L2 2799 2892 -422 564 237 85 0 chr1 66894438 66894615 -175769738 + L1MC4 LINE L1 6459 6650 -1392 387 73 0 0 chr1 66895362 66895417 -175768936 + (ATG)n Simple_repeat Simple_repeat 2 56 0 573 326 73 21 chr1 66895418 66895651 -175768702 - MIR SINE MIR -10 252 8 312 337 51 40 chr1 66895674 66895819 -175768534 - MIR SINE MIR -63 145 4 1992 131 38 7 chr1 66896653 66896943 -175767410 + AluSx SINE Alu 1 299 -13 906 158 18 0 chr1 66896965 66897136 -175767217 - L1MA6 LINE L1 -3 6297 6124 8722 29 0 0 chr1 66897550 66899353 -175765000 - L1PA3 LINE L1 -3 6152 4349 17934 33 1 0 chr1 66899353 66901543 -175762810 + L1PA3 LINE L1 2183 4374 -1772 595 188 8 0 chr1 66901540 66901657 -175762696 - L1MA6 LINE L1 -167 6133 6016 * 2306 45 0 0 chr1 66901670 66901956 -175762397 + L1PA2 LINE L1 5870 6155 0 21 0 0 0 chr1 66901997 66902018 -175762335 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr1 66902037 66902064 -175762289 + (A)n Simple_repeat Simple_repeat 1 27 0 251 327 0 28 chr1 66902494 66902601 -175761752 + L2 LINE L2 3169 3272 -41 189 290 32 65 chr1 66902681 66902805 -175761548 + MIR SINE MIR 72 191 -71 233 161 0 89 chr1 66902919 66902975 -175761378 + L3 LINE CR1 1526 1576 -1 2597 143 34 5 chr1 66903209 66903623 -175760730 + MSTB LTR MaLR 1 426 0 227 158 0 0 chr1 66903686 66903724 -175760629 - MIR SINE MIR -106 156 119 1757 159 226 12 chr1 66903866 66904268 -175760085 - MLT1D LTR MaLR 0 505 18 403 308 43 8 chr1 66904639 66904756 -175759597 - MIR SINE MIR -122 140 20 230 325 36 0 chr1 66905618 66905701 -175758652 + L2 LINE L2 2938 3023 -249 192 219 42 94 chr1 66906349 66906445 -175757908 - L3 LINE CR1 -1038 539 449 384 336 4 20 chr1 66906532 66906704 -175757649 - MIR3 SINE MIR -53 155 15 1099 256 116 25 chr1 66906795 66907201 -175757152 - LTR16A1 LTR ERVL -7 450 8 329 254 158 30 chr1 66907721 66907886 -175756467 - MIR SINE MIR -3 259 74 475 317 154 30 chr1 66908077 66908662 -175755691 + L2 LINE L2 2661 3313 0 194 326 26 4 chr1 66908949 66909069 -175755284 + MIR SINE MIR 20 144 -64 193 299 142 67 chr1 66909345 66909479 -175754874 - MIR3 SINE MIR -15 193 50 272 310 31 63 chr1 66909595 66909645 -175754708 + MIR SINE MIR 37 87 -166 1624 178 106 3 chr1 66909645 66909976 -175754377 + MLT1A1 LTR MaLR 1 365 0 272 310 31 63 chr1 66909976 66910088 -175754265 + MIR SINE MIR 87 191 -62 816 222 6 6 chr1 66911282 66911444 -175752909 - MER20 DNA MER1_type -56 163 2 297 297 99 0 chr1 66911664 66911755 -175752598 + L2 LINE L2 3173 3272 0 438 238 43 113 chr1 66911829 66912014 -175752339 + MER91B DNA MER1_type 19 190 0 285 333 80 12 chr1 66913127 66913289 -175751064 - MIR3 SINE MIR 0 208 36 334 146 0 107 chr1 66914003 66914106 -175750247 + L1MA8 LINE L1 6200 6291 0 190 309 0 0 chr1 66915022 66915064 -175749289 - L2 LINE L2 -22 3291 3250 * 498 333 85 0 chr1 66915034 66915223 -175749130 - MIR SINE MIR -28 234 30 314 306 39 50 chr1 66915573 66915753 -175748600 + MIR SINE MIR 49 226 -36 * 858 270 34 0 chr1 66915722 66915955 -175748398 + MIR SINE MIR 21 261 -1 273 266 9 73 chr1 66916209 66916318 -175748035 + MIR SINE MIR 19 120 -88 451 347 20 15 chr1 66916384 66916589 -175747764 + MIR SINE MIR 38 241 -21 384 305 43 102 chr1 66917014 66917270 -175747083 + L2 LINE L2 3032 3272 0 313 319 57 0 chr1 66918064 66918205 -175746148 + L2 LINE L2 3165 3313 0 367 232 11 54 chr1 66918291 66918476 -175745877 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 21 0 0 0 chr1 66918481 66918502 -175745851 + AT_rich Low_complexity Low_complexity 1 21 0 186 273 34 23 chr1 66918502 66918590 -175745763 + MIR SINE MIR 146 234 -28 763 284 85 34 chr1 66918824 66919212 -175745141 + MLT1I LTR MaLR 2 409 0 312 343 40 0 chr1 66920445 66920544 -175743809 + L2 LINE L2 3156 3258 -14 350 314 225 0 chr1 66920546 66920737 -175743616 + MIR SINE MIR 15 248 -14 223 269 0 0 chr1 66921369 66921421 -175742932 + A-rich Low_complexity Low_complexity 2 53 0 435 165 249 130 chr1 66922697 66922958 -175741395 - L1MB7 LINE L1 -10 6174 5883 316 274 89 22 chr1 66923012 66923147 -175741206 + MIR SINE MIR 113 256 -6 21 36 0 0 chr1 66923456 66923484 -175740869 + AT_rich Low_complexity Low_complexity 1 28 0 255 0 0 0 chr1 66923574 66923605 -175740748 - L1M LINE L1 -1019 5284 5254 2329 139 51 23 chr1 66923615 66923722 -175740631 + L1PB4 LINE L1 5707 5810 -346 2748 16 0 0 chr1 66923722 66924029 -175740324 - AluYa5 SINE Alu -4 307 1 2329 139 51 23 chr1 66924029 66924352 -175740001 + L1PB4 LINE L1 5810 6149 -7 1799 234 44 60 chr1 66924483 66924844 -175739509 - MER119 DNA MER1_type -1 582 232 501 138 0 12 chr1 66924844 66924924 -175739429 - L1MC1 LINE L1 -18 6315 6237 1799 234 44 60 chr1 66924924 66925147 -175739206 - MER119 DNA MER1_type -351 232 7 202 246 154 0 chr1 66925892 66925957 -175738396 - MIR SINE MIR 0 262 188 187 250 275 25 chr1 66926281 66926361 -175737992 + L2 LINE L2 3173 3272 0 1224 190 34 4 chr1 66927175 66927443 -175736910 - L1MA10 LINE L1 -7 6327 6052 260 368 59 43 chr1 66928165 66928469 -175735884 - LTR16C LTR ERVL -61 430 122 398 313 58 21 chr1 66928640 66928966 -175735387 + L1ME4a LINE L1 5614 5951 -170 366 307 73 68 chr1 66929516 66929708 -175734645 - MIR SINE MIR -59 203 11 37 62 0 0 chr1 66930148 66930213 -175734140 + AT_rich Low_complexity Low_complexity 1 65 0 321 335 158 25 chr1 66931426 66931584 -175732769 + MIR SINE MIR 12 190 -72 323 357 83 43 chr1 66933062 66933555 -175730798 + L2 LINE L2 2108 2620 -694 2109 121 3 7 chr1 66933558 66933865 -175730488 - AluSg SINE Alu -4 306 1 776 174 0 0 chr1 66933954 66934086 -175730267 + FLAM_C SINE Alu 12 143 0 29 0 0 0 chr1 66934094 66934123 -175730230 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr1 66935015 66935049 -175729304 + (CA)n Simple_repeat Simple_repeat 2 35 0 414 301 77 31 chr1 66935583 66935779 -175728574 - MIR SINE MIR -38 224 20 311 351 34 38 chr1 66935783 66936045 -175728308 - L2 LINE L2 -782 2532 2272 291 128 26 39 chr1 66936501 66936579 -175727774 + CT-rich Low_complexity Low_complexity 2 78 0 6971 146 27 8 chr1 66936864 66937381 -175726972 + Tigger3b DNA MER2_type 5 511 -2517 282 29 0 0 chr1 66937381 66937416 -175726937 + (TG)n Simple_repeat Simple_repeat 2 36 0 6971 146 27 8 chr1 66937416 66938101 -175726252 + Tigger3b DNA MER2_type 511 1230 -1 342 287 52 29 chr1 66938192 66938328 -175726025 - L2 LINE L2 -1 3312 3174 449 331 17 0 chr1 66938334 66938515 -175725838 - MER117 DNA MER1_type -6 191 8 219 258 48 16 chr1 66938706 66938768 -175725585 - L2 LINE L2 -2 3270 3207 * 282 339 22 45 chr1 66938765 66938937 -175725416 + MIR3 SINE MIR 36 205 -3 290 244 70 12 chr1 66939221 66939307 -175725046 - MLT1J2 LTR MaLR -121 329 239 288 342 34 7 chr1 66939362 66939511 -175724842 - MLT1J2 LTR MaLR -296 154 2 1728 185 108 49 chr1 66939719 66940190 -175724163 + MLT1D LTR MaLR 7 505 0 696 210 131 0 chr1 66940209 66940385 -175723968 - MIR SINE MIR 0 262 64 661 243 94 66 chr1 66940581 66940943 -175723410 + MLT1H LTR MaLR 97 468 -81 4017 224 31 18 chr1 66942863 66944075 -175720278 - L1MA9 LINE L1 -38 6274 5052 703 293 0 0 chr1 66944076 66944267 -175720086 - AluJb SINE Alu -1 311 121 457 225 42 8 chr1 66944267 66944387 -175719966 - L1M4 LINE L1 -1116 6051 5928 2134 198 8 13 chr1 66944387 66944782 -175719571 - L1M4 LINE L1 -6768 400 8 1156 247 38 46 chr1 66944813 66945206 -175719147 - MLT1B LTR MaLR 0 390 1 1788 149 59 3 chr1 66945208 66945496 -175718857 - AluSg SINE Alu -6 304 1 257 317 117 0 chr1 66945513 66945633 -175718720 - L2 LINE L2 -1 3271 3138 2248 111 0 0 chr1 66946249 66946547 -175717806 + AluSq SINE Alu 1 298 -15 266 320 21 10 chr1 66946656 66946753 -175717600 + L2 LINE L2 3173 3270 -2 211 371 57 24 chr1 66947533 66947657 -175716696 - L2 LINE L2 -2 3270 3143 1973 198 79 32 chr1 66947670 66948141 -175716212 + MLT1D LTR MaLR 13 505 0 1048 266 84 16 chr1 66948390 66948842 -175715511 - MER20B DNA MER1_type 0 783 301 333 284 101 27 chr1 66949011 66949159 -175715194 + MLT1L LTR MaLR 443 601 -14 4481 178 31 8 chr1 66949235 66950117 -175714236 + MER4D LTR ERV1 1 902 -1 1924 199 68 0 chr1 66950281 66950707 -175713646 - MLT1D LTR MaLR 0 505 51 615 302 91 43 chr1 66950850 66951329 -175713024 - MLT1K LTR MaLR 0 588 7 357 329 149 6 chr1 66951725 66951886 -175712467 + MIR SINE MIR 6 189 -73 2259 144 5 19 chr1 66951906 66952275 -175712078 - THE1B LTR MaLR 0 364 1 11532 99 14 1 chr1 66952275 66953835 -175710518 - THE1B-int LTR MaLR 0 1580 1 2268 136 11 19 chr1 66953835 66954202 -175710151 - THE1B LTR MaLR 0 364 1 236 308 39 13 chr1 66954250 66954328 -175710025 - MIR SINE MIR -87 121 42 271 354 88 25 chr1 66954372 66954612 -175709741 - MIR SINE MIR 0 262 8 375 306 32 34 chr1 66954863 66955012 -175709341 - MIR SINE MIR -78 130 9 1871 120 54 36 chr1 66955458 66955791 -175708562 + LTR8 LTR ERV1 2 340 -351 945 55 0 0 chr1 66955791 66955918 -175708435 - L1PA5 LINE L1 -3499 2647 2521 * 7384 51 1 19 chr1 66955915 66959498 -175704855 + L1PA5 LINE L1 2634 6153 -1 2231 78 37 118 chr1 66959498 66959772 -175704581 + LTR8 LTR ERV1 315 547 -144 2235 130 0 0 chr1 66959772 66960072 -175704281 + AluSx SINE Alu 2 301 -11 2231 78 37 118 chr1 66960072 66960205 -175704148 + LTR8 LTR ERV1 547 689 -2 717 269 6 6 chr1 66960384 66960559 -175703794 + MER45A DNA AcHobo 4 178 0 337 357 94 28 chr1 66960726 66960981 -175703372 - L2 LINE L2 -441 2873 2602 459 344 62 5 chr1 66962092 66962287 -175702066 - MIR SINE MIR -44 218 13 406 240 85 9 chr1 66962776 66962952 -175701401 + MLT1J1 LTR MaLR 111 272 -178 186 43 0 0 chr1 66962952 66962975 -175701378 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 406 240 85 9 chr1 66962975 66963077 -175701276 + MLT1J1 LTR MaLR 272 449 -1 430 254 16 57 chr1 66963078 66963200 -175701153 - MIR SINE MIR -145 117 1 294 282 106 71 chr1 66963602 66963772 -175700581 - MIR SINE MIR -37 225 50 276 53 0 0 chr1 66963775 66963813 -175700540 + (TG)n Simple_repeat Simple_repeat 2 39 0 2332 285 80 42 chr1 66964174 66966817 -175697536 + L1ME2 LINE L1 1622 4438 -1777 1112 272 44 37 chr1 66966860 66967319 -175697034 + L1ME2 LINE L1 5763 6224 -9 249 311 0 22 chr1 66967320 66967410 -175696943 + GA-rich Low_complexity Low_complexity 3 90 0 210 300 64 45 chr1 66968239 66968349 -175696004 - MIR SINE MIR -61 201 90 295 293 0 0 chr1 66968430 66968505 -175695848 + L2 LINE L2 3234 3308 -5 1887 209 12 19 chr1 66969614 66970040 -175694313 + L1MC1 LINE L1 5911 6333 0 188 385 15 0 chr1 66970630 66970695 -175693658 + L2 LINE L2 3233 3298 -15 1039 213 0 0 chr1 66970738 66970926 -175693427 + MER5A DNA MER1_type 1 188 -1 729 319 19 27 chr1 66971402 66971665 -175692688 - MIR SINE MIR 0 262 2 273 242 114 76 chr1 66972207 66972339 -175692014 - MIR SINE MIR -21 241 105 342 365 22 7 chr1 66972622 66972759 -175691594 - MIR3 SINE MIR -47 161 23 6566 173 22 189 chr1 66973016 66975180 -175689173 + L1M2 LINE L1 1 1647 -5202 2153 137 0 3 chr1 66975180 66975487 -175688866 + AluSx SINE Alu 1 306 -6 6566 173 22 189 chr1 66975487 66975959 -175688394 + L1M2 LINE L1 1647 2196 -4653 12200 174 62 7 chr1 67075959 67078165 -175586188 - ERVL-B1 LTR ERVL -1194 4570 2241 5148 115 31 11 chr1 67078165 67078928 -175585425 - LTR17 LTR ERV1 -1 779 1 2338 77 0 0 chr1 67078932 67079219 -175585134 - HERV17 LTR ERV1 -5 8621 8335 * 14841 49 5 0 chr1 67079212 67080957 -175583396 - HERV17 LTR ERV1 -4444 4182 2430 9467 75 11 6 chr1 67080940 67082171 -175582182 - HERV17 LTR ERV1 -6610 2016 779 * 4760 96 29 26 chr1 67082477 67083165 -175581188 - HERV17 LTR ERV1 -7935 691 2 * 4867 124 32 38 chr1 67083165 67083950 -175580403 - LTR17 LTR ERV1 0 780 1 7961 201 46 13 chr1 67083950 67086068 -175578285 - ERVL-B1 LTR ERVL -3520 2244 3 1324 233 67 23 chr1 67086070 67086414 -175577939 - MLT2B1 LTR ERVL 0 520 162 517 247 65 12 chr1 67086493 67086663 -175577690 + MIR SINE MIR 17 195 -67 1762 150 45 3 chr1 67086685 67086950 -175577403 + AluSg SINE Alu 1 280 -30 300 27 0 0 chr1 67086950 67086987 -175577366 + (CA)n Simple_repeat Simple_repeat 2 38 0 1762 150 45 3 chr1 67086987 67087007 -175577346 + AluSg SINE Alu 280 298 -12 2526 48 0 3 chr1 67087372 67087667 -175576686 - AluY SINE Alu -1 310 17 6555 140 58 54 chr1 67088699 67089972 -175574381 + MER52C LTR ERV1 1 1278 0 259 276 103 70 chr1 67090054 67090210 -175574143 + L1MB3 LINE L1 2 162 -5793 1025 241 72 49 chr1 67090629 67091270 -175573083 + L1MB3 LINE L1 197 1302 -4653 1856 223 142 31 chr1 67091272 67091722 -175572631 + L1MB3 LINE L1 1337 1736 -4298 1610 198 7 10 chr1 67091722 67092020 -175572333 + AluJo SINE Alu 1 297 -15 1856 223 142 31 chr1 67092020 67092794 -175571559 + L1MB3 LINE L1 1736 2705 -3329 3444 194 102 15 chr1 67092801 67093922 -175570431 + L1MB3 LINE L1 4807 6018 -53 4034 189 52 48 chr1 67093922 67094091 -175570262 - L1 LINE L1 -786 5360 5193 2272 118 0 0 chr1 67094091 67094395 -175569958 - AluSg SINE Alu -4 306 3 4034 189 52 48 chr1 67094395 67095275 -175569078 - L1 LINE L1 -953 5193 4306 4656 140 43 4 chr1 67095277 67096050 -175568303 + L1PA16 LINE L1 5355 6157 -9 276 371 76 0 chr1 67096272 67096404 -175567949 + LTR33 LTR ERVL 3 144 -377 263 286 143 9 chr1 67097391 67097496 -175566857 - LTR33A LTR ERVL -349 174 56 180 375 104 24 chr1 67097613 67097941 -175566412 + L2 LINE L2 2839 3192 -80 244 250 17 17 chr1 67098963 67099023 -175565330 - Charlie4 DNA MER1_type -4 1957 1898 2353 128 31 0 chr1 67099598 67099951 -175564402 + THE1B LTR MaLR 1 364 0 3586 193 32 46 chr1 67101238 67101272 -175563081 + L1M1 LINE L1 16 49 -7516 2257 104 0 0 chr1 67101272 67101594 -175562759 + AluY SINE Alu 1 311 0 3586 193 32 46 chr1 67101594 67102466 -175561887 + L1M1 LINE L1 49 909 -6656 * 12622 184 55 7 chr1 67102463 67102616 -175561737 + L1M1 LINE L1 2840 2984 -4581 2759 23 0 3 chr1 67102616 67102926 -175561427 + AluYa5 SINE Alu 1 309 -2 12622 184 55 7 chr1 67102926 67106395 -175557958 + L1M1 LINE L1 2984 6702 -863 1719 122 132 37 chr1 67106516 67106949 -175557404 + ERVL-B1 LTR ERVL 5284 5757 -7 1951 216 106 6 chr1 67106949 67107422 -175556931 + MLT2B1 LTR ERVL 1 520 0 811 209 76 14 chr1 67107546 67107756 -175556597 + MLT2B1 LTR ERVL 1 223 -297 266 125 21 0 chr1 67107756 67107804 -175556549 + (TG)n Simple_repeat Simple_repeat 1 49 0 312 274 0 0 chr1 67107804 67107877 -175556476 - L1MC4 LINE L1 -1340 6702 6630 301 326 34 0 chr1 67107809 67107898 -175556455 + L1MC4 LINE L1 6648 6739 -1303 * 988 116 211 0 chr1 67107918 67108108 -175556245 + MER30 DNA MER1_type 1 230 0 347 295 74 16 chr1 67110508 67110630 -175553723 + L2 LINE L2 3177 3305 -8 183 344 88 32 chr1 67110801 67110926 -175553427 - MIR SINE MIR -111 151 20 1023 198 57 28 chr1 67112062 67112310 -175552043 - MLT1A2 LTR MaLR 0 374 120 877 262 18 7 chr1 67112434 67112709 -175551644 - L1M4 LINE L1 -1905 4477 4200 1772 169 83 16 chr1 67114409 67114842 -175549511 - MER101 LTR ERV1 -2 472 11 1603 196 150 0 chr1 67115037 67115578 -175548775 - MER114 LTR ERV -6 642 21 1634 198 22 30 chr1 67117265 67117633 -175546720 - MLT1A1 LTR MaLR 0 365 1 219 350 117 64 chr1 67117659 67118111 -175546242 - L2 LINE L2 -588 2726 2251 234 211 18 18 chr1 67118863 67118920 -175545433 - MLT1K LTR MaLR 0 588 532 528 311 14 24 chr1 67119423 67119632 -175544721 - MLT1I LTR MaLR -109 300 94 921 229 43 56 chr1 67120173 67120560 -175543793 + MLT2B1 LTR ERVL 1 480 -40 230 150 0 50 chr1 67120605 67120665 -175543688 + MLT2B1 LTR ERVL 464 520 0 15723 84 9 5 chr1 67120790 67123808 -175540545 - L1PA7 LINE L1 -1 6153 3134 11705 139 16 113 chr1 67123808 67126748 -175537605 - L1PA7 LINE L1 -3479 2667 12 1189 273 105 39 chr1 67126755 67128300 -175536053 - L1ME LINE L1 -3763 2619 892 229 234 0 16 chr1 67128841 67128905 -175535448 - L1ME LINE L1 -5933 439 377 22 0 0 0 chr1 67129178 67129200 -175535153 + AT_rich Low_complexity Low_complexity 1 22 0 11157 152 57 22 chr1 67129845 67132173 -175532180 + L1M4c LINE L1 21 2430 -3954 460 336 28 83 chr1 67132204 67132564 -175531789 + L1MEd LINE L1 500 839 -5280 377 289 65 90 chr1 67132664 67132793 -175531560 + MLT1I LTR MaLR 63 194 -215 1737 173 49 35 chr1 67132793 67133162 -175531191 - MLT1A2 LTR MaLR 0 374 1 377 289 65 90 chr1 67133162 67133388 -175530965 + MLT1I LTR MaLR 194 409 0 530 292 129 74 chr1 67133516 67133900 -175530453 + L1M4 LINE L1 4117 4479 -1667 1794 141 0 47 chr1 67133900 67134220 -175530133 + AluSx SINE Alu 1 306 0 530 292 129 74 chr1 67134220 67134850 -175529503 + L1M4 LINE L1 4479 5206 -940 195 262 24 0 chr1 67135266 67135308 -175529045 + L2 LINE L2 3261 3303 -10 2300 121 0 0 chr1 67137545 67137852 -175526501 + AluSq SINE Alu 1 307 -6 894 217 30 0 chr1 67137862 67138028 -175526325 + FAM SINE Alu 1 171 -4 1149 219 108 31 chr1 67138743 67139068 -175525285 - MLT1F1 LTR MaLR -1 566 217 30087 73 14 17 chr1 67139441 67143638 -175520715 - HERVL LTR ERVL -159 5495 1312 4828 74 6 6 chr1 67144077 67144736 -175519617 - HERVL LTR ERVL -4353 1301 643 520 168 15 0 chr1 67144736 67144939 -175519414 + (TA)n Simple_repeat Simple_repeat 1 206 0 336 250 68 34 chr1 67145037 67145154 -175519199 + LTR33 LTR ERVL 281 403 -118 727 51 0 0 chr1 67145154 67145252 -175519101 + MLT2A1 LTR ERVL 1 98 -346 * 860 106 10 3 chr1 67145250 67145380 -175518973 + MLT2A1 LTR ERVL 280 475 -40 604 197 15 7 chr1 67145549 67145686 -175518667 + MLT1A1 LTR MaLR 228 365 0 6988 226 45 33 chr1 67145687 67147400 -175516953 + MLT1A1-int LTR MaLR 2 1735 0 1202 182 32 122 chr1 67147400 67147801 -175516552 + MLT1A1 LTR MaLR 1 365 0 1060 249 64 34 chr1 67148123 67148449 -175515904 - LTR16C LTR ERVL -8 483 148 344 343 56 0 chr1 67148480 67148588 -175515765 + MER81 DNA DNA 1 114 0 318 169 0 4 chr1 67149102 67149165 -175515188 + Alu SINE Alu 1 48 -254 3116 41 0 3 chr1 67149165 67149592 -175514761 + L1PA3 LINE L1 5742 6167 0 284 255 46 59 chr1 67149626 67149779 -175514574 - MIR SINE MIR -33 229 79 312 308 8 51 chr1 67149919 67150036 -175514317 - L2 LINE L2 -22 3250 3139 297 44 22 0 chr1 67150386 67150431 -175513922 - MADE1 DNA Mariner 0 80 35 259 292 77 49 chr1 67150582 67150780 -175513573 + MIR SINE MIR 19 221 -41 996 315 134 11 chr1 67151386 67152055 -175512298 - L2 LINE L2 -919 2395 1644 6913 82 17 8 chr1 67152055 67153285 -175511068 + L1PA10 LINE L1 4927 6163 -5 754 230 70 16 chr1 67153615 67153802 -175510551 + L1PA16 LINE L1 5946 6142 -24 180 111 0 0 chr1 67154578 67154605 -175509748 + (TA)n Simple_repeat Simple_repeat 1 27 0 1395 94 0 0 chr1 67155014 67155195 -175509158 - MLT2A1 LTR ERVL -45 399 219 1311 78 45 0 chr1 67155192 67155371 -175508982 - MLT2A2 LTR ERVL -266 187 1 * 365 251 65 32 chr1 67155371 67155488 -175508865 - LTR33 LTR ERVL -117 404 281 641 301 77 54 chr1 67156221 67156613 -175507740 - LTR33A LTR ERVL -122 401 1 1206 270 53 46 chr1 67156670 67157161 -175507192 + L2 LINE L2 1863 2360 -954 2401 97 3 0 chr1 67157161 67157472 -175506881 + AluSx SINE Alu 1 312 0 1206 270 53 46 chr1 67157472 67157506 -175506847 + L2 LINE L2 2360 2392 -922 314 293 71 0 chr1 67157610 67157709 -175506644 - L2 LINE L2 -5 3267 3162 315 263 62 0 chr1 67158027 67158107 -175506246 + MIR SINE MIR 105 189 -73 219 309 40 48 chr1 67158197 67158323 -175506030 - MIR3 SINE MIR -45 163 39 199 328 70 48 chr1 67158537 67158723 -175505630 - L3 LINE CR1 -191 1386 1197 * 245 359 103 28 chr1 67158713 67159100 -175505253 + L2 LINE L2 2424 2839 -475 213 347 21 0 chr1 67159279 67159374 -175504979 - L2 LINE L2 -848 2466 2370 200 277 36 12 chr1 67159468 67159551 -175504802 - L3 LINE CR1 -562 1015 931 205 388 12 12 chr1 67159986 67160071 -175504282 - MIR SINE MIR -142 120 36 184 341 11 23 chr1 67160436 67160524 -175503829 + MIR3 SINE MIR 99 185 -23 343 328 95 22 chr1 67161295 67161437 -175502916 + MIR SINE MIR 14 144 -118 2065 138 0 0 chr1 67161437 67161728 -175502625 - AluSc SINE Alu -18 291 1 343 328 95 22 chr1 67161728 67161772 -175502581 + MIR SINE MIR 144 183 -79 1034 180 115 25 chr1 67161772 67161972 -175502381 - MER20 DNA MER1_type -1 218 1 1837 155 3 10 chr1 67161980 67162270 -175502083 + AluSx SINE Alu 6 293 -19 343 328 95 22 chr1 67162270 67162305 -175502048 + MIR SINE MIR 189 262 0 398 328 67 17 chr1 67163027 67163207 -175501146 - MIR SINE MIR -54 208 20 259 328 52 81 chr1 67163411 67163780 -175500573 - L2 LINE L2 -43 3229 2872 237 258 124 0 chr1 67164331 67164428 -175499925 + L2 LINE L2 2942 3050 -222 1741 189 17 3 chr1 67164747 67165049 -175499304 + ERVL LTR ERVL 3353 3658 -2106 189 298 70 35 chr1 67165049 67165163 -175499190 + L2 LINE L2 2591 2708 -606 352 278 31 34 chr1 67165846 67166043 -175498310 - MIR SINE MIR -9 253 3 245 303 0 0 chr1 67166056 67166141 -175498212 + (TAG)n Simple_repeat Simple_repeat 1 85 0 317 321 23 38 chr1 67167226 67167357 -175496996 - MIR SINE MIR -116 146 18 199 351 13 0 chr1 67168092 67168169 -175496184 - L2 LINE L2 -300 2972 2895 203 288 311 0 chr1 67168409 67168541 -175495812 - MIR3 SINE MIR -8 200 28 215 312 108 0 chr1 67169588 67169681 -175494672 - MIR SINE MIR -56 152 50 195 139 0 0 chr1 67170480 67170516 -175493837 + (A)n Simple_repeat Simple_repeat 1 36 0 224 316 79 0 chr1 67171386 67171462 -175492891 + MIR SINE MIR 48 129 -79 22 0 0 0 chr1 67171517 67171539 -175492814 + AT_rich Low_complexity Low_complexity 1 22 0 314 240 77 97 chr1 67171551 67171747 -175492606 + L2 LINE L2 3025 3216 -97 369 357 32 13 chr1 67172904 67173061 -175491292 + MIR SINE MIR 26 185 -77 382 222 26 60 chr1 67173560 67173677 -175490676 - MIR3 SINE MIR -9 199 87 343 321 18 24 chr1 67174196 67174361 -175489992 + L2 LINE L2 3125 3288 -25 229 257 40 14 chr1 67174361 67174435 -175489918 + GA-rich Low_complexity Low_complexity 1 76 0 360 313 15 8 chr1 67176429 67176563 -175487790 + CT-rich Low_complexity Low_complexity 5 139 0 206 266 47 16 chr1 67176845 67176909 -175487444 + MIR SINE MIR 62 127 -135 1372 289 26 8 chr1 67177133 67177524 -175486829 - LTR16A LTR ERVL -10 440 43 28 86 0 0 chr1 67177586 67177656 -175486697 + AT_rich Low_complexity Low_complexity 1 70 0 403 314 93 15 chr1 67178293 67178497 -175485856 + MIR SINE MIR 23 242 -20 257 357 24 0 chr1 67178578 67178662 -175485691 + L2 LINE L2 3146 3231 -41 33 25 0 0 chr1 67178667 67178707 -175485646 + AT_rich Low_complexity Low_complexity 1 40 0 437 299 167 60 chr1 67179402 67179720 -175484633 - L2 LINE L2 -12 3260 2909 1028 185 0 0 chr1 67180113 67180286 -175484067 + MLT2C2 LTR ERVL 238 410 -54 256 289 0 31 chr1 67180295 67180392 -175483961 - L1MC4 LINE L1 -1334 6708 6615 291 112 0 8 chr1 67180392 67180443 -175483910 + MLT2C2 LTR ERVL 417 456 -8 336 268 84 21 chr1 67180487 67180629 -175483724 + MIR SINE MIR 102 252 -10 184 284 80 34 chr1 67181279 67181367 -175482986 - MIR SINE MIR -139 123 32 322 256 161 18 chr1 67181408 67181576 -175482777 + MER117 DNA MER1_type 5 196 -1 1211 206 5 5 chr1 67181607 67181826 -175482527 + MER58A DNA MER1_type 1 219 -5 220 246 0 46 chr1 67181894 67181959 -175482394 - L2 LINE L2 0 3313 3252 195 129 0 0 chr1 67181966 67181997 -175482356 + (CA)n Simple_repeat Simple_repeat 2 32 0 491 328 17 11 chr1 67182584 67182761 -175481592 + MER5B DNA MER1_type 1 178 0 393 259 96 30 chr1 67183010 67183176 -175481177 + MIR SINE MIR 11 187 -75 467 244 135 13 chr1 67183794 67183954 -175480399 - MIR SINE MIR -32 230 53 189 333 111 8 chr1 67184104 67184221 -175480132 - MIR SINE MIR -31 231 103 628 287 116 10 chr1 67184993 67185286 -175479067 + LTR16A LTR ERVL 125 448 -2 1161 241 195 38 chr1 67185438 67185957 -175478396 + MLT1G1 LTR MaLR 1 573 -17 753 238 40 60 chr1 67186709 67186957 -175477396 + MIR SINE MIR 19 261 -1 247 264 209 31 chr1 67187105 67187234 -175477119 + L2 LINE L2 3162 3313 0 320 288 48 0 chr1 67187237 67187362 -175476991 + MIR SINE MIR 76 206 -56 2598 53 0 0 chr1 67187753 67188055 -175476298 - AluY SINE Alu -9 302 1 456 283 25 0 chr1 67188073 67188193 -175476160 + MIR3 SINE MIR 72 194 -14 188 338 56 28 chr1 67188886 67189028 -175475325 + MIR SINE MIR 60 205 -57 197 331 102 32 chr1 67189231 67189388 -175474965 + L2 LINE L2 3102 3269 -3 1018 234 0 0 chr1 67189482 67189687 -175474666 - MER3 DNA MER1_type -4 205 1 241 223 0 22 chr1 67189691 67189748 -175474605 + MIR SINE MIR 16 70 -138 5919 105 55 2 chr1 67189758 67190661 -175473692 + L1P LINE L1 2391 3341 -2805 220 214 0 0 chr1 67190661 67190703 -175473650 + MIR SINE MIR 105 146 -62 327 294 101 0 chr1 67191233 67191342 -175473011 + L2 LINE L2 3190 3309 -4 231 293 53 105 chr1 67191610 67191743 -175472610 - L2 LINE L2 -164 3108 2983 571 272 57 13 chr1 67191763 67191921 -175472432 + MIR SINE MIR 31 195 -67 252 320 108 63 chr1 67191981 67192297 -175472056 - L2 LINE L2 -388 2926 2597 1149 271 51 32 chr1 67192421 67192856 -175471497 - LTR33 LTR ERVL -55 466 24 458 273 187 2 chr1 67194159 67194378 -175469975 - MIR SINE MIR -11 251 3 2618 98 24 27 chr1 67194517 67194893 -175469460 + THE1C LTR MaLR 1 375 0 454 296 72 0 chr1 67194949 67195101 -175469252 - MER103 DNA DNA -1 165 3 239 272 40 40 chr1 67195629 67195752 -175468601 - LTR33 LTR ERVL 0 521 399 264 62 101 0 chr1 67195752 67195797 -175468556 - MLT2A2 LTR ERVL 0 453 396 345 309 48 29 chr1 67196534 67196744 -175467609 + L2 LINE L2 2762 2975 -339 374 288 109 22 chr1 67197165 67197349 -175467004 - L3 LINE CR1 -165 1412 1213 246 317 56 21 chr1 67197412 67197554 -175466799 + MIR SINE MIR 86 232 -30 576 239 16 66 chr1 67198334 67198577 -175465776 + L1M4 LINE L1 4096 4326 -1820 25 31 0 0 chr1 67198577 67198609 -175465744 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr1 67198643 67198671 -175465682 + AT_rich Low_complexity Low_complexity 1 28 0 2542 280 6 33 chr1 67198671 67199192 -175465161 - MER7C DNA MER2_type -94 508 2 627 192 58 13 chr1 67199199 67199355 -175464998 + L1M4 LINE L1 4456 4618 -1528 623 322 78 11 chr1 67199364 67199740 -175464613 - LTR16A1 LTR ERVL -4 453 72 1100 263 79 45 chr1 67199836 67200118 -175464235 + L1PA6 LINE L1 2503 2774 -4099 7351 59 7 7 chr1 67200118 67201204 -175463149 + L1PA6 LINE L1 5769 6854 -3 1100 263 79 45 chr1 67201204 67202076 -175462277 + L1PA6 LINE L1 2774 6381 -492 228 135 0 0 chr1 67402318 67402355 -175261998 + (CCG)n Simple_repeat Simple_repeat 3 39 0 22 35 0 0 chr1 67403580 67403609 -175260744 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr1 67405625 67405654 -175258699 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr1 67408246 67408275 -175256078 + (T)n Simple_repeat Simple_repeat 1 29 0 25 0 0 0 chr1 67411576 67411601 -175252752 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr1 67411635 67411666 -175252687 + AT_rich Low_complexity Low_complexity 1 31 0 245 314 146 45 chr1 67413793 67414013 -175250340 - MIR SINE MIR -6 256 15 205 214 18 0 chr1 67414488 67414544 -175249809 + (TA)n Simple_repeat Simple_repeat 1 57 0 27 29 0 0 chr1 67414671 67414705 -175249648 + AT_rich Low_complexity Low_complexity 1 34 0 2005 121 34 0 chr1 67414767 67415064 -175249289 - AluSp SINE Alu -6 307 1 2356 102 0 0 chr1 67415105 67415410 -175248943 - AluSg SINE Alu -4 306 2 192 356 78 9 chr1 67418239 67418354 -175245999 - MIR SINE MIR -134 128 6 363 265 121 15 chr1 67418392 67418524 -175245829 - MIR SINE MIR -71 191 46 1387 222 3 10 chr1 67419168 67419456 -175244897 - AluJo SINE Alu -26 286 1 2381 93 3 0 chr1 67419674 67419975 -175244378 + AluSp SINE Alu 1 302 -11 426 279 48 126 chr1 67421853 67422186 -175242167 + L2 LINE L2 2954 3260 -12 183 80 0 0 chr1 67426711 67426736 -175237617 + (A)n Simple_repeat Simple_repeat 1 25 0 222 167 0 0 chr1 67427169 67427229 -175237124 + CT-rich Low_complexity Low_complexity 2 61 0 2378 79 0 0 chr1 67428436 67428727 -175235626 + AluSc SINE Alu 1 291 -18 807 62 0 0 chr1 67429214 67429311 -175235042 + AluSg SINE Alu 36 132 -178 212 308 64 77 chr1 67429677 67429725 -175234628 + MIR SINE MIR 1 48 -214 2184 92 10 3 chr1 67429725 67430017 -175234336 - AluSq SINE Alu -19 294 1 212 308 64 77 chr1 67430017 67430124 -175234229 + MIR SINE MIR 48 154 -108 297 311 50 106 chr1 67430174 67430301 -175234052 - L2 LINE L2 -51 3221 3088 267 103 0 0 chr1 67430301 67430340 -175234013 + (TA)n Simple_repeat Simple_repeat 1 39 0 297 311 50 106 chr1 67430340 67430533 -175233820 - L2 LINE L2 -184 3088 2919 2119 142 33 6 chr1 67430577 67430908 -175233445 - MER7A DNA MER2_type -1 345 8 211 296 0 14 chr1 67431131 67431202 -175233151 + GA-rich Low_complexity Low_complexity 1 70 0 26 0 0 0 chr1 67431372 67431398 -175232955 + AT_rich Low_complexity Low_complexity 1 26 0 2060 144 3 0 chr1 67432035 67432341 -175232012 + AluSx SINE Alu 1 307 -5 372 257 128 0 chr1 67432416 67432525 -175231828 + MLT1J LTR MaLR 95 217 -294 1790 167 3 25 chr1 67432534 67432946 -175231407 + AluJo SINE Alu 1 405 0 466 105 9 38 chr1 67432966 67433071 -175231282 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 226 295 201 22 chr1 67433726 67433865 -175230488 + L2 LINE L2 3146 3309 -4 216 333 0 46 chr1 67434069 67434156 -175230197 - MIR SINE MIR -110 152 70 1991 128 4 0 chr1 67434434 67434742 -175229611 + AluSx SINE Alu 1 309 0 357 274 69 0 chr1 67434779 67434881 -175229472 - MIR3 SINE MIR -23 185 77 1877 143 0 0 chr1 67435219 67435505 -175228848 - AluJb SINE Alu -26 286 1 284 248 54 81 chr1 67435551 67435700 -175228653 + MIR SINE MIR 74 218 -44 1638 193 20 7 chr1 67436027 67436322 -175228031 + AluJb SINE Alu 1 299 -13 839 151 67 73 chr1 67436322 67436501 -175227852 + AluJb SINE Alu 134 311 -1 231 183 56 56 chr1 67437321 67437392 -175226961 - AluJ/FRAM SINE Alu -3 299 229 297 0 0 0 chr1 67437449 67437482 -175226871 + (TG)n Simple_repeat Simple_repeat 2 34 0 489 189 44 0 chr1 67437508 67437598 -175226755 - FRAM SINE Alu -9 167 74 305 182 0 0 chr1 67437613 67437668 -175226685 + L1MC4 LINE L1 6638 6692 -1350 2637 49 0 0 chr1 67437670 67437974 -175226379 - AluY SINE Alu -7 304 1 1995 146 25 25 chr1 67437974 67438337 -175226016 - L1MB3 LINE L1 -45 6138 5776 216 250 29 0 chr1 67438337 67438405 -175225948 + (TA)n Simple_repeat Simple_repeat 2 71 0 2208 130 0 0 chr1 67438415 67438722 -175225631 + AluSx SINE Alu 1 307 -5 874 99 53 46 chr1 67438752 67438904 -175225449 - L1MB3 LINE L1 -432 5739 5587 259 288 73 90 chr1 67438987 67439059 -175225294 + MIR3 SINE MIR 34 106 -102 1516 198 50 0 chr1 67439059 67439342 -175225011 + AluJb SINE Alu 3 299 -13 259 288 73 90 chr1 67439342 67439446 -175224907 + MIR3 SINE MIR 106 207 -1 328 341 37 23 chr1 67439613 67439830 -175224523 - L2 LINE L2 -436 2878 2659 2440 70 7 0 chr1 67439876 67440178 -175224175 - AluY SINE Alu -7 304 1 797 149 0 9 chr1 67440459 67440573 -175223780 + AluJ SINE Alu 3 115 -187 684 105 0 32 chr1 67440574 67440669 -175223684 + AluJ SINE Alu 198 289 -23 2073 113 17 3 chr1 67440672 67440965 -175223388 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr1 67441153 67441179 -175223174 + AT_rich Low_complexity Low_complexity 1 26 0 234 276 17 17 chr1 67441981 67442039 -175222314 - L2 LINE L2 -15 3257 3200 21 0 0 0 chr1 67442359 67442380 -175221973 + AT_rich Low_complexity Low_complexity 1 21 0 1762 185 10 7 chr1 67442480 67442783 -175221570 - AluJb SINE Alu -8 304 1 2041 104 6 92 chr1 67442787 67443125 -175221228 - AluSx SINE Alu -3 309 1 2130 108 0 0 chr1 67443268 67443577 -175220776 + AluSc SINE Alu 3 311 0 1347 113 16 0 chr1 67444616 67444802 -175219551 + AluSq SINE Alu 1 189 -124 806 164 8 0 chr1 67444867 67444989 -175219364 + AluSg/x SINE Alu 177 299 -10 2149 122 10 0 chr1 67445175 67445469 -175218884 + AluSx SINE Alu 1 297 -15 2258 66 35 0 chr1 67446660 67446949 -175217404 + AluSq SINE Alu 1 299 -14 28 0 0 0 chr1 67447099 67447127 -175217226 + AT_rich Low_complexity Low_complexity 1 28 0 333 274 131 29 chr1 67448076 67448251 -175216102 + MIR3 SINE MIR 11 203 -5 908 248 47 28 chr1 67448761 67449015 -175215338 + MIR SINE MIR 4 262 0 252 108 14 40 chr1 67451023 67451097 -175213256 + (CAAAAA)n Simple_repeat Simple_repeat 1 72 0 22 0 0 0 chr1 67452810 67452832 -175211521 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr1 67453803 67453852 -175210501 + GC_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr1 67453878 67453901 -175210452 + GC_rich Low_complexity Low_complexity 1 23 0 592 217 35 7 chr1 67454849 67454992 -175209361 + MIR SINE MIR 78 224 -38 2062 110 0 41 chr1 67455029 67455348 -175209005 - AluSx SINE Alu -6 306 1 2204 116 13 0 chr1 67455555 67455857 -175208496 + AluSx SINE Alu 1 306 -6 1156 209 33 42 chr1 67455869 67456175 -175208178 + AluJb SINE Alu 9 311 -1 924 179 0 0 chr1 67456296 67456464 -175207889 - FRAM SINE Alu 0 168 1 196 195 0 0 chr1 67456466 67456507 -175207846 - MIR SINE MIR -112 150 110 21 0 0 31 chr1 67456537 67456554 -175207799 + AT_rich Low_complexity Low_complexity 1 18 -13 2083 105 7 30 chr1 67456554 67456858 -175207495 + AluSx SINE Alu 1 297 -15 21 0 0 31 chr1 67456858 67456872 -175207481 + AT_rich Low_complexity Low_complexity 18 31 0 849 230 0 6 chr1 67456918 67457092 -175207261 - FAM SINE Alu -1 174 2 369 281 58 36 chr1 67457131 67457323 -175207030 - MIR SINE MIR -25 237 43 30 27 0 0 chr1 67457614 67457651 -175206702 + AT_rich Low_complexity Low_complexity 1 37 0 2030 120 17 14 chr1 67458895 67459186 -175205167 - AluSg SINE Alu -18 292 1 378 0 0 0 chr1 67460689 67460731 -175203622 + (TG)n Simple_repeat Simple_repeat 2 43 0 23 68 0 0 chr1 67460902 67460946 -175203407 + GC_rich Low_complexity Low_complexity 1 44 0 781 244 91 12 chr1 67462394 67462636 -175201717 - MIR SINE MIR -1 261 1 26 66 0 26 chr1 67462657 67462675 -175201678 + AT_rich Low_complexity Low_complexity 1 18 -56 2431 66 20 0 chr1 67462675 67462979 -175201374 - AluY SINE Alu -1 310 1 26 66 0 26 chr1 67462979 67463036 -175201317 + AT_rich Low_complexity Low_complexity 18 74 0 1131 192 19 38 chr1 67463229 67463450 -175200903 + L1PB4 LINE L1 5899 6116 -40 1932 153 3 3 chr1 67463450 67463779 -175200574 + AluSx SINE Alu 1 312 0 1131 192 19 38 chr1 67463779 67463818 -175200535 + L1PB4 LINE L1 6116 6154 -2 236 111 0 0 chr1 67464099 67464135 -175200218 - L1P4 LINE L1 -340 5828 5793 725 249 114 5 chr1 67464395 67464784 -175199569 + L1ME4a LINE L1 5520 5988 -133 277 154 9 127 chr1 67464794 67464849 -175199504 + L1ME4a LINE L1 6020 6058 -63 2174 120 0 0 chr1 67464849 67465161 -175199192 - AluSx SINE Alu 0 312 1 277 154 9 127 chr1 67465161 67465214 -175199139 + L1ME4a LINE L1 6058 6116 -5 629 168 10 0 chr1 67465279 67465380 -175198973 + Tigger3(Golem) DNA MER2_type 38 139 -2890 1564 108 24 0 chr1 67465407 67465620 -175198733 + Tigger3(Golem) DNA MER2_type 2811 3028 -1 3441 261 94 32 chr1 67466268 67467456 -175196897 + L1ME3A LINE L1 2220 3565 -2581 1740 181 7 3 chr1 67467456 67467744 -175196609 - AluJb SINE Alu -23 289 1 3441 261 94 32 chr1 67467744 67468387 -175195966 + L1ME3A LINE L1 3565 4166 -1980 1524 135 57 12 chr1 67468393 67468638 -175195715 - Tigger3(Golem) DNA MER2_type -2 3027 2772 468 162 0 0 chr1 67468635 67468709 -175195644 - Tigger3(Golem) DNA MER2_type -2887 142 69 * 2324 99 3 0 chr1 67468709 67469003 -175195350 - AluSg SINE Alu -15 295 1 22 35 0 0 chr1 67469005 67469034 -175195319 + AT_rich Low_complexity Low_complexity 1 29 0 928 186 6 0 chr1 67469034 67469190 -175195163 - FRAM SINE Alu -20 156 1 463 189 0 0 chr1 67469194 67469268 -175195085 - Tigger3(Golem) DNA MER2_type -2955 74 1 1788 240 89 53 chr1 67469268 67469474 -175194879 + L1ME3A LINE L1 4170 4367 -1803 2038 152 0 0 chr1 67469474 67469776 -175194577 + AluSx SINE Alu 1 302 -10 243 0 0 0 chr1 67469779 67469806 -175194547 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1788 240 89 53 chr1 67469806 67470720 -175193633 + L1ME3A LINE L1 4368 5247 -923 2148 121 0 0 chr1 67470720 67471009 -175193344 + AluSx SINE Alu 1 289 -23 330 87 0 0 chr1 67471009 67471055 -175193298 + (TA)n Simple_repeat Simple_repeat 2 47 0 1788 240 89 53 chr1 67471055 67471490 -175192863 + L1ME3A LINE L1 5247 5811 -359 1568 176 46 13 chr1 67471490 67471792 -175192561 + AluJo SINE Alu 1 312 0 1788 240 89 53 chr1 67471792 67471935 -175192418 + L1ME3A LINE L1 5811 5947 -223 384 291 47 14 chr1 67472059 67472207 -175192146 + L1ME3A LINE L1 5995 6147 -23 2204 103 0 3 chr1 67472565 67472856 -175191497 + AluJb SINE Alu 6 295 -17 216 313 15 0 chr1 67473046 67473113 -175191240 - L2 LINE L2 -48 3265 3198 1926 148 3 7 chr1 67473500 67473797 -175190556 - AluJo SINE Alu -16 296 1 211 250 56 14 chr1 67474062 67474134 -175190219 + L2 LINE L2 3229 3303 -10 399 57 0 0 chr1 67474324 67474377 -175189976 - Alu SINE Alu -3 297 245 309 75 0 0 chr1 67474377 67474417 -175189936 - Alu SINE Alu -16 285 246 2211 115 0 0 chr1 67474417 67474704 -175189649 - AluSq SINE Alu -26 287 1 975 283 29 16 chr1 67474749 67475057 -175189296 + L3 LINE CR1 617 928 -649 2269 86 0 0 chr1 67475297 67475643 -175188710 + AluY SINE Alu 1 311 0 308 236 176 36 chr1 67475768 67475933 -175188420 + MIR SINE MIR 75 262 0 218 236 18 0 chr1 67476293 67476348 -175188005 + L3 LINE CR1 1243 1298 -279 1876 159 6 13 chr1 67476595 67476909 -175187444 - AluSx SINE Alu 0 312 1 240 330 9 28 chr1 67476942 67477048 -175187305 - MER5A DNA MER1_type -22 167 64 602 307 101 27 chr1 67477111 67477717 -175186636 - L2 LINE L2 -2 3311 2658 2088 119 7 10 chr1 67477820 67478115 -175186238 - AluSx SINE Alu -18 294 1 276 316 23 15 chr1 67478119 67478252 -175186101 - MIR SINE MIR -50 212 79 468 276 58 31 chr1 67478263 67478325 -175186028 + MER102b DNA MER1_type 100 159 -1269 1266 135 47 159 chr1 67478325 67478665 -175185688 + AluJo SINE Alu 1 302 0 468 276 58 31 chr1 67478665 67478827 -175185526 + MER102b DNA MER1_type 159 330 -11 1108 76 5 28 chr1 67479028 67479240 -175185113 + (TTTC)n Simple_repeat Simple_repeat 1 207 0 1844 131 24 59 chr1 67479241 67479615 -175184738 - L1MA8 LINE L1 0 6291 5931 1078 234 74 55 chr1 67479642 67479967 -175184386 + MLT1B LTR MaLR 1 331 -59 1241 116 0 11 chr1 67479968 67480149 -175184204 - AluSg/x SINE Alu -14 298 120 262 158 20 0 chr1 67480149 67480199 -175184154 + MLT1A1 LTR MaLR 320 365 0 1107 226 15 15 chr1 67480481 67480742 -175183611 + MIR SINE MIR 2 262 0 1798 136 66 0 chr1 67481077 67481350 -175183003 + AluSg SINE Alu 1 291 -19 2016 135 0 3 chr1 67481489 67481778 -175182575 - AluSx SINE Alu -18 294 7 237 342 17 17 chr1 67481785 67481902 -175182451 + MER5A DNA MER1_type 51 167 -22 2030 121 0 7 chr1 67482354 67482635 -175181718 + AluSx SINE Alu 1 279 -33 261 83 0 0 chr1 67482635 67482671 -175181682 + (GAA)n Simple_repeat Simple_repeat 1 36 0 233 164 14 68 chr1 67483693 67483766 -175180587 + L2 LINE L2 2835 2903 -410 1044 188 0 0 chr1 67483771 67483941 -175180412 - AluSg/x SINE Alu -18 294 125 2111 126 7 0 chr1 67483946 67484232 -175180121 - AluSx SINE Alu -24 288 1 288 0 0 0 chr1 67484361 67484393 -175179960 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 332 262 86 64 chr1 67484456 67484643 -175179710 - L2 LINE L2 -102 3211 3021 332 263 97 32 chr1 67484780 67484966 -175179387 + L2 LINE L2 3115 3312 -1 566 226 163 0 chr1 67485179 67485369 -175178984 + MIR SINE MIR 32 252 -10 475 276 44 8 chr1 67485639 67485808 -175178545 + MIR SINE MIR 23 198 -63 2320 108 0 0 chr1 67486057 67486362 -175177991 + AluSp SINE Alu 1 305 -8 434 311 67 10 chr1 67487424 67487617 -175176736 - MIR SINE MIR -12 250 47 2119 191 64 29 chr1 67487705 67488186 -175176167 + MLT1D LTR MaLR 1 498 -7 237 196 0 0 chr1 67488397 67488443 -175175910 + L2 LINE L2 3268 3313 0 316 269 0 21 chr1 67489005 67489098 -175175255 - L2 LINE L2 0 3313 3223 1733 111 42 121 chr1 67489280 67489612 -175174741 + AluSg SINE Alu 1 306 -4 238 273 0 0 chr1 67489615 67489659 -175174694 - L2 LINE L2 -28 3244 3201 234 255 0 0 chr1 67490549 67490600 -175173753 + Charlie8 DNA MER1_type 2367 2417 0 187 342 205 0 chr1 67490600 67490717 -175173636 - MIR3 SINE MIR -48 160 20 33 25 0 0 chr1 67493557 67493597 -175170756 + AT_rich Low_complexity Low_complexity 1 40 0 1413 164 35 48 chr1 67493601 67493913 -175170440 - L1MA9 LINE L1 -6 6306 5999 24 0 0 0 chr1 67494411 67494435 -175169918 + AT_rich Low_complexity Low_complexity 1 24 0 301 330 109 8 chr1 67495153 67495392 -175168961 + L3 LINE CR1 1254 1516 -61 2354 99 0 0 chr1 67497156 67497458 -175166895 + AluSc SINE Alu 1 302 -7 302 202 84 59 chr1 67498657 67498776 -175165577 + MIR SINE MIR 27 148 -60 306 0 0 0 chr1 67498911 67498945 -175165408 + (T)n Simple_repeat Simple_repeat 1 34 0 194 152 0 0 chr1 67499007 67499040 -175165313 + MIR3 SINE MIR 170 202 -6 182 256 0 0 chr1 67499782 67499825 -175164528 + MIR SINE MIR 218 260 -2 259 335 36 36 chr1 67500119 67500286 -175164067 + MIR SINE MIR 19 185 -77 227 259 44 32 chr1 67500283 67500381 -175163972 - L2 LINE L2 -4 3268 3131 * 933 191 25 0 chr1 67500381 67500543 -175163810 + FRAM SINE Alu 1 166 0 227 259 44 32 chr1 67500543 67500581 -175163772 - L2 LINE L2 -141 3131 3095 284 261 99 28 chr1 67500725 67500867 -175163486 - L2 LINE L2 -467 2847 2696 435 286 19 7 chr1 67501006 67501150 -175163203 + MIR SINE MIR 20 167 -63 562 271 88 6 chr1 67501997 67502167 -175162186 - MIR SINE MIR -74 188 5 547 192 46 33 chr1 67502208 67502359 -175161994 - MIR SINE MIR -90 172 20 354 290 62 35 chr1 67502966 67503111 -175161242 - L2 LINE L2 -26 3246 3098 1159 244 30 93 chr1 67503794 67504351 -175160002 - L2 LINE L2 -399 2915 2394 2413 97 0 0 chr1 67504561 67504860 -175159493 - AluSc SINE Alu -10 299 1 186 218 0 73 chr1 67505013 67505068 -175159285 + MER5A DNA MER1_type 99 149 -40 360 305 80 35 chr1 67505506 67505706 -175158647 + MIR SINE MIR 48 256 -6 527 286 51 64 chr1 67505790 67505896 -175158457 + MIR SINE MIR 31 137 -125 2213 83 7 0 chr1 67505896 67506209 -175158144 + AluSc SINE Alu 1 315 0 527 286 51 64 chr1 67506209 67506335 -175158018 + MIR SINE MIR 137 261 -1 1729 176 7 0 chr1 67506470 67506765 -175157588 - AluJo SINE Alu -5 307 11 306 0 0 0 chr1 67506772 67506806 -175157547 + (T)n Simple_repeat Simple_repeat 1 34 0 249 288 80 56 chr1 67506826 67506951 -175157402 - MIR SINE MIR -78 130 2 493 278 98 30 chr1 67507072 67507306 -175157047 - MIR SINE MIR -11 251 2 267 83 0 0 chr1 67507416 67507452 -175156901 - MADE1 DNA Mariner 0 80 45 321 261 0 0 chr1 67507452 67507521 -175156832 + MIR SINE MIR 79 147 -115 3164 173 56 51 chr1 67507661 67507708 -175156645 - L1MB7 LINE L1 -16 6168 6123 721 219 0 0 chr1 67507708 67507836 -175156517 - FLAM_A SINE Alu -5 128 1 3164 173 56 51 chr1 67507836 67508280 -175156073 - L1MB7 LINE L1 -61 6123 5671 2462 96 0 0 chr1 67508280 67508592 -175155761 - AluSx SINE Alu 0 312 1 3164 173 56 51 chr1 67508592 67508783 -175155570 - L1MB7 LINE L1 -513 5671 5482 912 220 16 0 chr1 67509175 67509366 -175154987 - MIR SINE MIR -27 235 42 1986 167 31 6 chr1 67509919 67510272 -175154081 + MLT1A1 LTR MaLR 4 365 0 895 307 112 39 chr1 67510431 67511272 -175153081 + L2 LINE L2 2412 3308 -5 273 267 38 53 chr1 67511446 67511577 -175152776 + L2 LINE L2 3009 3137 -176 206 278 67 44 chr1 67511862 67511952 -175152401 + MIR SINE MIR 120 211 -51 1068 271 107 19 chr1 67512473 67513106 -175151247 - L2 LINE L2 -26 3287 2505 270 261 56 32 chr1 67513178 67513340 -175151013 - MIR SINE MIR -55 207 36 193 317 17 0 chr1 67514804 67514864 -175149489 + L2 LINE L2 3154 3214 -58 243 274 0 0 chr1 67515176 67515238 -175149115 + MIR SINE MIR 200 261 -1 1612 224 82 8 chr1 67515607 67516009 -175148344 - MER63B DNA MER1_type 0 436 5 246 62 0 0 chr1 67516223 67516255 -175148098 + (A)n Simple_repeat Simple_repeat 1 32 0 203 185 0 19 chr1 67516493 67516547 -175147806 + GA-rich Low_complexity Low_complexity 1 53 0 27 29 0 0 chr1 67517506 67517540 -175146813 + AT_rich Low_complexity Low_complexity 1 34 0 1454 129 0 0 chr1 67517636 67517838 -175146515 - AluSg/x SINE Alu -15 295 94 232 226 0 107 chr1 67517849 67517933 -175146420 - MER112 DNA MER1_type -177 83 9 1938 157 0 10 chr1 67518191 67518490 -175145863 + AluSx SINE Alu 1 296 -16 503 278 14 0 chr1 67518548 67518692 -175145661 + MIR SINE MIR 77 222 -40 190 305 12 24 chr1 67518768 67518850 -175145503 - L2 LINE L2 -8 3305 3225 25 0 0 0 chr1 67518865 67518890 -175145463 + AT_rich Low_complexity Low_complexity 1 25 0 356 282 68 43 chr1 67518915 67519032 -175145321 + L2 LINE L2 3190 3309 -4 * 369 259 18 9 chr1 67519030 67519142 -175145211 - MIR SINE MIR -31 231 119 205 295 148 20 chr1 67519697 67519846 -175144507 - L3 LINE CR1 -66 1511 1344 231 114 0 0 chr1 67520719 67520754 -175143599 + (GA)n Simple_repeat Simple_repeat 2 36 0 197 350 48 19 chr1 67522123 67522226 -175142127 + L2 LINE L2 3154 3259 -13 2187 92 35 0 chr1 67522273 67522557 -175141796 + AluSc SINE Alu 1 294 -15 202 143 0 0 chr1 67522880 67522915 -175141438 - MIR SINE MIR -76 132 98 185 182 45 0 chr1 67523019 67523063 -175141290 + L2 LINE L2 3210 3255 -17 237 229 0 0 chr1 67523095 67523143 -175141210 - MIR SINE MIR -131 77 30 291 250 144 3 chr1 67523542 67523665 -175140688 + MIR SINE MIR 18 164 -79 184 283 102 57 chr1 67523727 67523904 -175140449 + L3 LINE CR1 1329 1513 -64 2240 102 0 3 chr1 67523947 67524250 -175140103 - AluSx SINE Alu -10 302 1 739 50 40 0 chr1 67524497 67524596 -175139757 + AluY SINE Alu 2 104 -207 2827 189 66 27 chr1 67524707 67525149 -175139204 - L1MB7 LINE L1 -44 6140 5664 2382 99 0 0 chr1 67525149 67525452 -175138901 - AluSx SINE Alu -9 303 1 2827 189 66 27 chr1 67525452 67525643 -175138710 - L1MB7 LINE L1 -520 5664 5482 343 236 0 0 chr1 67526036 67526108 -175138245 - MIR SINE MIR -27 235 164 2312 77 0 0 chr1 67526111 67526396 -175137957 + AluY SINE Alu 20 304 -7 244 267 72 82 chr1 67526492 67526687 -175137666 + MIR SINE MIR 20 212 -50 285 325 46 20 chr1 67526814 67526965 -175137388 - L2 LINE L2 0 3313 3159 403 288 195 79 chr1 67527698 67528205 -175136148 + MLT1K LTR MaLR 23 588 0 252 202 34 0 chr1 67528250 67528369 -175135984 + (TTATA)n Simple_repeat Simple_repeat 1 123 0 298 361 16 0 chr1 67528382 67528542 -175135811 - MIR SINE MIR -59 203 39 347 338 75 22 chr1 67528719 67528997 -175135356 + L2 LINE L2 2566 2858 -456 441 284 96 86 chr1 67529099 67529391 -175134962 + L2 LINE L2 2977 3271 -1 741 173 8 15 chr1 67529410 67529543 -175134810 + FLAM_C SINE Alu 1 132 -1 225 210 0 0 chr1 67530377 67530439 -175133914 + (TCCA)n Simple_repeat Simple_repeat 2 63 0 218 279 7 30 chr1 67530595 67530722 -175133631 - L2 LINE L2 -303 3010 2891 211 220 20 20 chr1 67530726 67530776 -175133577 - L2 LINE L2 -9 3263 3214 181 302 0 16 chr1 67531333 67531396 -175132957 + L2 LINE L2 3002 3063 -209 341 293 6 73 chr1 67531516 67531680 -175132673 + L2 LINE L2 3108 3260 -12 639 258 5 7 chr1 67531777 67531944 -175132409 + MLT1H LTR MaLR 1 209 -340 597 219 71 7 chr1 67531921 67532076 -175132277 + MLT1H LTR MaLR 385 549 0 * 434 248 33 16 chr1 67533117 67533238 -175131115 - MIR SINE MIR -63 145 23 419 258 16 16 chr1 67533333 67533457 -175130896 - MIR SINE MIR -43 219 96 314 284 27 27 chr1 67533605 67533753 -175130600 + MIR SINE MIR 44 191 -71 216 228 0 0 chr1 67533756 67533813 -175130540 + (TG)n Simple_repeat Simple_repeat 2 58 0 373 297 69 6 chr1 67534021 67534196 -175130157 - MIR3 SINE MIR -5 203 18 196 269 0 0 chr1 67534539 67534591 -175129762 - MIR SINE MIR -159 103 52 320 238 9 0 chr1 67534609 67534714 -175129639 + (TCCA)n Simple_repeat Simple_repeat 3 108 0 247 300 90 10 chr1 67534716 67534816 -175129537 - L2 LINE L2 -5 3267 3160 441 0 0 0 chr1 67535220 67535269 -175129084 + (TG)n Simple_repeat Simple_repeat 2 50 0 3916 146 28 1 chr1 67536249 67536527 -175127826 + L1MB1 LINE L1 5501 5770 -398 186 43 0 0 chr1 67536527 67536550 -175127803 + (CA)n Simple_repeat Simple_repeat 2 24 0 3916 146 28 1 chr1 67536550 67536922 -175127431 + L1MB1 LINE L1 5770 6168 0 454 302 134 0 chr1 67537443 67537615 -175126738 - MER117 DNA MER1_type 0 197 3 2433 119 16 21 chr1 67538760 67539137 -175125216 + THE1C LTR MaLR 1 375 0 10255 125 12 40 chr1 67539137 67539544 -175124809 + THE1C-int LTR MaLR 1 418 -1162 2160 120 0 46 chr1 67539544 67539689 -175124664 + AluSx SINE Alu 3 153 -159 2335 112 0 0 chr1 67539689 67539985 -175124368 + AluSc SINE Alu 1 296 -13 2160 120 0 46 chr1 67539985 67540164 -175124189 + AluSx SINE Alu 153 312 0 10255 125 12 40 chr1 67540164 67541375 -175122978 + THE1C-int LTR MaLR 418 1574 -6 2467 104 8 31 chr1 67541380 67541764 -175122589 + THE1C LTR MaLR 1 375 0 202 240 210 20 chr1 67541797 67541897 -175122456 + L2 LINE L2 3149 3267 -5 713 292 127 28 chr1 67543061 67543773 -175120580 + L2 LINE L2 2534 3313 0 391 275 97 29 chr1 67543865 67544072 -175120281 + MIR SINE MIR 28 248 -14 1724 174 0 42 chr1 67544193 67544503 -175119850 - AluJb SINE Alu -15 297 1 189 301 107 19 chr1 67545562 67545665 -175118688 + L2 LINE L2 3138 3249 -23 195 167 0 0 chr1 67545677 67545719 -175118634 + GA-rich Low_complexity Low_complexity 2 43 0 449 306 96 0 chr1 67545733 67545890 -175118463 + MIR3 SINE MIR 33 204 -4 2121 232 149 18 chr1 67545902 67546574 -175117779 - MER20B DNA MER1_type -3 780 21 734 263 29 11 chr1 67546618 67546793 -175117560 + MER45A DNA AcHobo 1 178 0 298 315 151 20 chr1 67548719 67548865 -175115488 + MER5A DNA MER1_type 19 183 -6 194 394 80 0 chr1 67548880 67549017 -175115336 + L2 LINE L2 3119 3266 -6 1586 227 21 64 chr1 67550213 67550742 -175113611 + Charlie4a DNA MER1_type 3 508 0 323 315 70 7 chr1 67550801 67550944 -175113409 + MIR SINE MIR 20 171 -91 351 292 153 5 chr1 67552027 67552229 -175112124 - MIR SINE MIR -11 251 20 308 193 0 0 chr1 67552481 67552538 -175111815 - MIR SINE MIR -117 145 89 316 343 30 12 chr1 67554310 67554476 -175109877 + MIR SINE MIR 20 188 -74 271 262 47 9 chr1 67555870 67555977 -175108376 - MIR3 SINE MIR -11 197 87 343 213 40 62 chr1 67556084 67556208 -175108145 - MIR SINE MIR -56 152 31 336 281 156 6 chr1 67556761 67556921 -175107432 + MIR SINE MIR 24 207 -55 802 116 33 0 chr1 67557699 67557820 -175106533 - AluSg/x SINE Alu 0 310 186 294 336 50 14 chr1 67558214 67558354 -175105999 + MIR SINE MIR 48 192 -70 231 347 8 8 chr1 67559328 67559452 -175104901 + L2 LINE L2 2698 2821 -493 285 333 37 22 chr1 67559893 67560028 -175104325 + L2 LINE L2 3134 3270 -2 2146 117 0 0 chr1 67560892 67561200 -175103153 - AluSx SINE Alu 0 308 1 200 234 21 0 chr1 67561266 67561313 -175103040 + (TATG)n Simple_repeat Simple_repeat 3 50 0 2405 100 7 0 chr1 67561895 67562205 -175102148 + AluSp SINE Alu 1 312 -1 316 358 37 37 chr1 67562727 67563048 -175101305 + L2 LINE L2 2471 2791 -523 232 285 72 88 chr1 67563165 67563358 -175100995 + L2 LINE L2 2994 3183 -89 382 305 8 8 chr1 67563473 67563601 -175100752 + L2 LINE L2 3184 3311 -2 328 293 17 77 chr1 67563781 67563962 -175100391 + MER5A DNA MER1_type 2 171 -18 213 292 14 14 chr1 67563969 67564041 -175100312 + L3 LINE CR1 1399 1470 -107 191 200 55 18 chr1 67564110 67564165 -175100188 + L2 LINE L2 3216 3272 0 1331 226 66 41 chr1 67565174 67565191 -175099162 + MLT1C LTR MaLR 45 60 -407 2590 77 12 82 chr1 67565191 67565596 -175098757 + MER51B LTR ERV1 1 377 0 1331 226 66 41 chr1 67565596 67565983 -175098370 + MLT1C LTR MaLR 60 467 0 382 241 55 41 chr1 67566159 67566304 -175098049 - MIR SINE MIR -5 257 111 760 303 14 0 chr1 67567160 67567381 -175096972 - MIR SINE MIR -10 252 29 189 319 22 22 chr1 67567586 67567677 -175096676 + MIR SINE MIR 160 250 -12 333 0 0 0 chr1 67567769 67567806 -175096547 + (TG)n Simple_repeat Simple_repeat 2 38 0 327 130 0 0 chr1 67569662 67569716 -175094637 + (TC)n Simple_repeat Simple_repeat 1 54 0 297 0 0 0 chr1 67570583 67570616 -175093737 + (TG)n Simple_repeat Simple_repeat 1 33 0 381 75 0 0 chr1 67570616 67570669 -175093684 + (GA)n Simple_repeat Simple_repeat 2 54 0 186 344 161 11 chr1 67571182 67571368 -175092985 + L2 LINE L2 2561 2774 -540 200 263 125 0 chr1 67571416 67571496 -175092857 + L2 LINE L2 3182 3271 -1 220 288 48 41 chr1 67571766 67571912 -175092441 - MIR3 SINE MIR -21 187 41 543 235 175 10 chr1 67572084 67572284 -175092069 + MIR SINE MIR 20 252 -10 38 96 0 0 chr1 67572453 67572568 -175091785 + AT_rich Low_complexity Low_complexity 1 115 0 243 343 71 24 chr1 67572602 67572771 -175091582 + MIR SINE MIR 14 190 -72 2417 85 0 22 chr1 67573205 67573523 -175090830 - AluY SINE Alu 0 311 1 839 173 0 0 chr1 67574082 67574215 -175090138 - FLAM_A SINE Alu 0 133 1 274 335 59 59 chr1 67574302 67574541 -175089812 - L2 LINE L2 -35 3237 2999 301 291 19 0 chr1 67574572 67574675 -175089678 - L2 LINE L2 -33 3280 3176 201 74 0 0 chr1 67574818 67574845 -175089508 + (TG)n Simple_repeat Simple_repeat 2 28 0 242 364 10 0 chr1 67574880 67574979 -175089374 - L2 LINE L2 -500 2814 2715 289 224 0 0 chr1 67575062 67575120 -175089233 + MIR SINE MIR 79 136 -126 22 0 0 0 chr1 67575209 67575231 -175089122 + AT_rich Low_complexity Low_complexity 1 22 0 2021 130 24 6 chr1 67575231 67575561 -175088792 - L1MA2 LINE L1 0 6304 5969 2101 108 58 3 chr1 67575886 67576181 -175088172 + AluSx SINE Alu 2 312 0 213 178 0 0 chr1 67576301 67576346 -175088007 + GA-rich Low_complexity Low_complexity 1 45 0 2524 77 0 3 chr1 67576609 67576921 -175087432 + AluY SINE Alu 1 311 0 246 239 0 0 chr1 67577279 67577350 -175087003 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 207 0 0 0 chr1 67577721 67577744 -175086609 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 746 150 0 0 chr1 67577750 67577863 -175086490 - FLAM_C SINE Alu -25 118 6 277 186 209 0 chr1 67579187 67579273 -175085080 + MER103 DNA DNA 4 107 -59 362 191 78 17 chr1 67579986 67580101 -175084252 + L1ME4a LINE L1 5999 6120 -1 256 276 0 0 chr1 67580282 67580340 -175084013 + L2 LINE L2 3256 3313 0 283 336 0 0 chr1 67581132 67581280 -175083073 + GA-rich Low_complexity Low_complexity 1 148 0 204 191 43 0 chr1 67582078 67582125 -175082228 + GA-rich Low_complexity Low_complexity 2 50 0 450 223 81 79 chr1 67582130 67582323 -175082030 - MIR SINE MIR -21 241 45 239 253 0 72 chr1 67582977 67583060 -175081293 - MER116 DNA Mariner -3 77 1 279 242 57 24 chr1 67583093 67583217 -175081136 + MIR SINE MIR 123 250 -12 224 114 0 0 chr1 67584210 67584245 -175080108 - L2 LINE L2 -13 3300 3266 475 290 39 78 chr1 67584314 67584569 -175079784 - L2 LINE L2 -38 3234 2990 261 240 0 0 chr1 67584575 67584671 -175079682 + (TG)n Simple_repeat Simple_repeat 2 97 0 257 329 24 18 chr1 67584706 67584873 -175079480 - L2 LINE L2 -469 2845 2678 2438 87 3 3 chr1 67585747 67586084 -175078269 + AluSx SINE Alu 1 337 0 443 200 0 9 chr1 67586266 67586371 -175077982 + CT-rich Low_complexity Low_complexity 1 104 0 356 251 147 37 chr1 67586561 67586724 -175077629 - MIR SINE MIR -7 255 75 574 233 79 38 chr1 67587026 67587235 -175077118 + MIR SINE MIR 36 262 0 430 252 184 19 chr1 67587862 67588171 -175076182 + L2 LINE L2 2713 3149 -164 2011 149 15 76 chr1 67588171 67588579 -175075774 + MLT1B LTR MaLR 1 383 -7 326 331 14 14 chr1 67588618 67588757 -175075596 + L2 LINE L2 3171 3309 -4 195 179 0 26 chr1 67589405 67589444 -175074909 - L2 LINE L2 -20 3293 3256 202 205 0 0 chr1 67589505 67589544 -175074809 + (AAGTG)n Simple_repeat Simple_repeat 4 42 0 1934 136 53 3 chr1 67589750 67590051 -175074302 + MLT1A1 LTR MaLR 4 319 -46 396 103 0 0 chr1 67590051 67590109 -175074244 + (A)n Simple_repeat Simple_repeat 1 58 0 480 308 43 24 chr1 67590344 67590552 -175073801 - MIR SINE MIR -35 227 16 575 206 75 38 chr1 67590614 67590774 -175073579 - MLT1C LTR MaLR -202 265 100 1569 191 20 26 chr1 67590984 67591325 -175073028 - MLT1C LTR MaLR 0 467 129 7440 120 10 24 chr1 67591646 67591813 -175072540 + L1MA2 LINE L1 4838 5006 -1298 1719 180 0 7 chr1 67591813 67592097 -175072256 + AluJo SINE Alu 1 282 -30 7440 120 10 24 chr1 67592097 67593426 -175070927 + L1MA2 LINE L1 5006 6304 0 204 272 79 70 chr1 67593457 67593571 -175070782 + L2 LINE L2 3156 3270 -2 532 301 193 21 chr1 67594521 67594956 -175069397 + L2 LINE L2 2804 3313 0 279 256 25 58 chr1 67595112 67595167 -175069186 - MIR SINE MIR -140 122 67 2567 127 3 0 chr1 67595167 67595528 -175068825 - THE1B LTR MaLR -2 362 1 279 256 25 58 chr1 67595528 67595593 -175068760 - MIR SINE MIR -195 67 6 192 40 0 0 chr1 67595898 67595923 -175068430 + (T)n Simple_repeat Simple_repeat 1 25 0 226 278 0 22 chr1 67596365 67596455 -175067898 - MIR3 SINE MIR -11 197 110 * 245 363 112 24 chr1 67596452 67596747 -175067606 - L2 LINE L2 -11 3261 2941 782 244 74 28 chr1 67596893 67597347 -175067006 + LTR33 LTR ERVL 6 514 -7 2120 128 0 3 chr1 67598699 67599004 -175065349 + AluSx SINE Alu 1 304 -8 259 258 237 0 chr1 67599368 67599461 -175064892 - MIR SINE MIR -82 180 66 440 255 23 123 chr1 67600209 67600511 -175063842 + L2 LINE L2 2812 3083 -230 224 270 22 67 chr1 67600532 67600621 -175063732 + L2 LINE L2 3229 3313 0 662 257 35 20 chr1 67600995 67601197 -175063156 + MIR SINE MIR 16 220 -42 201 182 23 0 chr1 67602039 67602083 -175062270 + CT-rich Low_complexity Low_complexity 2 46 0 325 236 64 18 chr1 67602695 67602805 -175061548 + MIR SINE MIR 83 197 -65 236 215 101 63 chr1 67603679 67603758 -175060595 + MLT1K LTR MaLR 138 219 -369 207 0 0 0 chr1 67603797 67603820 -175060533 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 372 222 170 15 chr1 67603890 67604025 -175060328 + MLT1K LTR MaLR 390 545 -43 303 244 40 57 chr1 67604350 67604443 -175059910 + MER113 DNA MER1_type? 5 95 -426 3625 138 77 5 chr1 67604443 67605038 -175059315 + L1PA16 LINE L1 5524 6161 -5 303 244 40 57 chr1 67605038 67605120 -175059233 + MER113 DNA MER1_type? 95 177 -344 2291 142 9 0 chr1 67605311 67605656 -175058697 - MER7A DNA MER2_type 0 346 1 48 32 0 0 chr1 67605808 67605870 -175058483 + AT_rich Low_complexity Low_complexity 1 62 0 23 54 0 0 chr1 67605953 67605990 -175058363 + AT_rich Low_complexity Low_complexity 1 37 0 32 43 0 0 chr1 67606723 67606769 -175057584 + AT_rich Low_complexity Low_complexity 1 46 0 297 0 0 0 chr1 67606777 67606810 -175057543 + (CA)n Simple_repeat Simple_repeat 2 34 0 429 328 39 95 chr1 67607000 67607284 -175057069 + L2 LINE L2 3005 3272 0 224 324 38 29 chr1 67607566 67607671 -175056682 + L2 LINE L2 2905 3010 -262 253 360 126 0 chr1 67608282 67608393 -175055960 + L2 LINE L2 3128 3252 -20 194 358 25 12 chr1 67608564 67608645 -175055708 - MIR SINE MIR -177 85 4 246 95 0 0 chr1 67609607 67609649 -175054704 + (A)n Simple_repeat Simple_repeat 1 42 0 221 83 28 0 chr1 67610099 67610135 -175054218 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 198 0 0 0 chr1 67612727 67612749 -175051604 + (A)n Simple_repeat Simple_repeat 1 22 0 729 239 103 19 chr1 67613297 67613510 -175050843 + MIR SINE MIR 8 238 -24 204 266 0 62 chr1 67614859 67614923 -175049430 - MIR SINE MIR -77 185 126 206 105 26 0 chr1 67615000 67615038 -175049315 + CT-rich Low_complexity Low_complexity 2 40 0 378 0 0 0 chr1 67616034 67616076 -175048277 + (TAA)n Simple_repeat Simple_repeat 1 42 0 427 263 320 5 chr1 67616077 67616271 -175048082 - MIR SINE MIR -6 256 2 3352 149 32 14 chr1 67616682 67617308 -175047045 + L1MB3 LINE L1 5544 6180 -3 1924 146 20 32 chr1 67617403 67617746 -175046607 + MER1B DNA MER1_type 1 339 0 235 292 67 75 chr1 67618439 67618559 -175045794 + L2 LINE L2 3148 3266 -6 249 284 17 69 chr1 67619639 67619755 -175044598 - MIR3 SINE MIR -3 205 96 288 293 12 54 chr1 67619755 67619922 -175044431 - MER103 DNA DNA -4 162 3 2033 164 3 6 chr1 67621346 67621658 -175042695 - AluJo SINE Alu -1 311 1 358 285 114 13 chr1 67621996 67622154 -175042199 + MIR SINE MIR 78 251 -11 526 306 145 29 chr1 67622636 67623091 -175041262 - L1M4 LINE L1 -1540 4606 4099 2099 154 0 0 chr1 67623095 67623406 -175040947 + AluSx SINE Alu 1 311 -1 303 28 0 0 chr1 67623603 67623639 -175040714 + (TG)n Simple_repeat Simple_repeat 2 37 0 233 296 0 11 chr1 67624163 67624251 -175040102 - L1MEc LINE L1 -4058 2338 2252 1036 36 29 0 chr1 67624296 67624435 -175039918 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 458 311 93 44 chr1 67626306 67626554 -175037799 + MIR SINE MIR 3 262 0 21 0 0 0 chr1 67626554 67626575 -175037778 + AT_rich Low_complexity Low_complexity 1 21 0 2273 98 3 13 chr1 67627117 67627423 -175036930 - AluSx SINE Alu -9 303 1 724 278 114 0 chr1 67627521 67627748 -175036605 - MIR SINE MIR -2 260 8 2340 108 0 0 chr1 67627904 67628210 -175036143 + AluY SINE Alu 1 306 -5 295 295 30 32 chr1 67628327 67628471 -175035882 - MIR SINE MIR -58 150 57 264 305 24 0 chr1 67628488 67628570 -175035783 - MIR SINE MIR 0 262 179 235 276 198 17 chr1 67628832 67628948 -175035405 - L2 LINE L2 -2 3311 3175 571 353 134 2 chr1 67629178 67629603 -175034750 - L2 LINE L2 -400 2914 2434 241 344 115 11 chr1 67629602 67629785 -175034568 - MIR SINE MIR -59 203 2 * 1583 159 3 28 chr1 67629837 67630158 -175034195 + AluJb SINE Alu 1 314 0 229 167 0 26 chr1 67630341 67630419 -175033934 - L1ME4a LINE L1 -12 6109 6034 326 288 61 30 chr1 67630759 67630891 -175033462 + MIR SINE MIR 111 246 -16 2241 90 0 0 chr1 67632329 67632628 -175031725 - AluSg SINE Alu -11 299 1 1752 160 30 9 chr1 67632677 67633009 -175031344 + MER44D DNA MER2_type 1 609 0 400 280 65 42 chr1 67634386 67634554 -175029799 + MIR SINE MIR 89 260 -2 209 222 0 0 chr1 67634632 67634677 -175029676 + L2 LINE L2 3268 3312 -1 22 0 0 0 chr1 67634997 67635019 -175029334 + AT_rich Low_complexity Low_complexity 1 22 0 214 273 18 0 chr1 67637854 67637909 -175026444 + GA-rich Low_complexity Low_complexity 2 57 0 225 0 0 0 chr1 67639610 67639635 -175024718 + (TC)n Simple_repeat Simple_repeat 2 26 0 210 71 0 0 chr1 67640666 67640694 -175023659 + (A)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr1 67641146 67641167 -175023186 + (T)n Simple_repeat Simple_repeat 1 21 0 225 214 0 0 chr1 67643018 67643060 -175021293 + A-rich Low_complexity Low_complexity 1 42 0 373 291 71 21 chr1 67644351 67644492 -175019861 + MIR SINE MIR 9 156 -106 329 268 51 83 chr1 67644765 67644809 -175019544 + L2 LINE L2 3121 3165 -107 1827 97 49 0 chr1 67644809 67644972 -175019381 - AluY SINE Alu -16 295 115 212 0 0 35 chr1 67644972 67645001 -175019352 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1827 97 49 0 chr1 67645001 67645084 -175019269 - AluY SINE Alu -196 115 37 329 268 51 83 chr1 67645084 67645196 -175019157 + L2 LINE L2 3165 3272 0 552 269 164 18 chr1 67645590 67645646 -175018707 - MIR SINE MIR -2 260 214 207 0 0 0 chr1 67645646 67645669 -175018684 + (TG)n Simple_repeat Simple_repeat 2 24 0 552 269 164 18 chr1 67645669 67645831 -175018522 - MIR SINE MIR -48 214 10 369 315 99 17 chr1 67645870 67646051 -175018302 - MIR SINE MIR -17 245 50 1199 171 100 8 chr1 67646114 67646353 -175018000 - AluJo SINE Alu -5 307 47 180 111 0 0 chr1 67647251 67647278 -175017075 + (A)n Simple_repeat Simple_repeat 1 27 0 459 52 0 0 chr1 67647703 67647761 -175016592 + (CA)n Simple_repeat Simple_repeat 2 59 0 259 357 89 6 chr1 67648312 67648469 -175015884 - L2 LINE L2 -13 3259 3090 * 369 307 94 24 chr1 67648455 67648667 -175015686 + MIR SINE MIR 36 262 0 371 279 115 8 chr1 67648988 67649110 -175015243 - MIR SINE MIR -57 151 17 623 315 54 57 chr1 67649331 67649718 -175014635 - LTR16A LTR ERVL -5 445 60 207 274 194 16 chr1 67649755 67649817 -175014536 - MIR SINE MIR -90 118 46 197 313 89 27 chr1 67650929 67651041 -175013312 - L2 LINE L2 -17 3296 3178 1457 176 14 7 chr1 67651411 67651701 -175012652 + MER58B DNA MER1_type 50 341 0 477 311 71 10 chr1 67651701 67651897 -175012456 + MIR SINE MIR 9 216 -46 732 268 70 21 chr1 67652141 67652384 -175011969 - MIR SINE MIR 0 262 8 2221 102 0 7 chr1 67653039 67653334 -175011019 - AluY SINE Alu -18 293 1 302 204 133 0 chr1 67653492 67653605 -175010748 + L1ME4a LINE L1 5799 5926 -195 531 287 0 8 chr1 67653957 67654086 -175010267 + MIR SINE MIR 21 148 -60 950 155 39 0 chr1 67654296 67654477 -175009876 - L1MB1 LINE L1 0 6168 5981 4059 252 78 27 chr1 67654479 67657290 -175007063 - L1 LINE L1 -2642 3328 398 516 313 65 55 chr1 67657703 67658103 -175006250 - L1 LINE L1 -5487 404 1 1605 297 81 29 chr1 67658287 67658916 -175005437 + Zaphod DNA AcHobo 2 663 -3368 2173 221 88 16 chr1 67658924 67659602 -175004751 + Zaphod DNA AcHobo 3292 4018 -13 6437 89 10 1 chr1 67659961 67661724 -175002629 - L1PA10 LINE L1 0 6168 4388 24 32 0 0 chr1 67661783 67661814 -175002539 + AT_rich Low_complexity Low_complexity 1 31 0 2154 108 0 0 chr1 67661989 67662268 -175002085 + AluSx SINE Alu 3 281 -31 28 88 0 18 chr1 67662384 67662406 -175001947 + AT_rich Low_complexity Low_complexity 1 22 -89 997 83 0 0 chr1 67662406 67662538 -175001815 - L1PA16 LINE L1 -9 6157 6026 28 88 0 18 chr1 67662538 67662628 -175001725 + AT_rich Low_complexity Low_complexity 22 111 0 423 222 56 0 chr1 67662767 67662875 -175001478 - MER5B DNA MER1_type -10 168 55 266 296 25 0 chr1 67662906 67662987 -175001366 + MER5B DNA MER1_type 20 102 -76 598 224 16 115 chr1 67663251 67663443 -175000910 + MER5B DNA MER1_type 1 173 -5 181 271 29 57 chr1 67664247 67664317 -175000036 - L2 LINE L2 0 3272 3205 5776 127 23 3 chr1 67665135 67666559 -174997794 - L1PA15 LINE L1 0 6165 4738 200 254 68 34 chr1 67666559 67666677 -174997676 - L3 LINE CR1 -310 1267 1146 434 158 13 0 chr1 67667330 67667406 -174996947 - MER96 DNA MER1_type? -91 84 8 466 222 86 102 chr1 67667465 67667789 -174996564 - MLT1H LTR MaLR -4 545 227 260 260 0 14 chr1 67667896 67667969 -174996384 - MLT1H LTR MaLR -406 143 72 2008 101 17 7 chr1 67668583 67668881 -174995472 + L1PA13 LINE L1 5863 6163 0 202 250 0 0 chr1 67669302 67669342 -174995011 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1731 189 0 20 chr1 67669496 67669797 -174994556 + AluJb SINE Alu 1 295 -17 2151 282 29 15 chr1 67670083 67670700 -174993653 - MLT2E LTR ERVL -2 626 1 291 322 0 0 chr1 67671215 67671302 -174993051 - MIR3 SINE MIR -21 187 101 * 484 271 66 13 chr1 67671300 67671451 -174992902 - MIR SINE MIR -89 173 15 284 331 121 6 chr1 67671884 67672050 -174992303 + L2 LINE L2 3125 3309 -4 300 356 30 0 chr1 67672139 67672240 -174992113 - MIR SINE MIR -57 151 48 346 241 75 60 chr1 67673240 67673373 -174990980 + MIR SINE MIR 20 154 -108 310 228 54 43 chr1 67673375 67673467 -174990886 - MIR SINE MIR -55 153 61 208 328 0 16 chr1 67674033 67674097 -174990256 - L3 LINE CR1 -133 1444 1382 318 315 79 0 chr1 67674105 67674232 -174990121 + L3 LINE CR1 1379 1515 -62 338 231 31 23 chr1 67674267 67674380 -174989973 + MIR SINE MIR 102 214 -48 1700 188 21 3 chr1 67674407 67674695 -174989658 - AluJb SINE Alu -19 293 1 319 335 62 31 chr1 67675471 67675669 -174988684 - MIR SINE MIR -51 211 4 245 271 71 0 chr1 67675849 67675919 -174988434 + MER5C DNA MER1_type 5 79 -245 196 361 36 18 chr1 67676582 67676748 -174987605 + L3 LINE CR1 659 827 -750 301 399 86 11 chr1 67676806 67677084 -174987269 + L2 LINE L2 2955 3253 -19 754 252 58 41 chr1 67677102 67677344 -174987009 + MIR SINE MIR 16 261 -1 320 283 167 25 chr1 67677358 67677478 -174986875 + L3 LINE CR1 1301 1437 -140 2296 86 7 0 chr1 67677500 67677791 -174986562 + AluSc SINE Alu 1 293 -16 2575 169 21 25 chr1 67677800 67678296 -174986057 + L1MB5 LINE L1 4757 5245 -935 2190 75 0 10 chr1 67678296 67678590 -174985763 + AluY SINE Alu 1 291 -20 2575 169 21 25 chr1 67678590 67679014 -174985339 + L1MB5 LINE L1 5245 5669 -511 1916 160 36 21 chr1 67679020 67679376 -174984977 + L1MB5 LINE L1 5773 6137 -37 5071 107 9 15 chr1 67679376 67680163 -174984190 + L1MA2 LINE L1 5522 6303 -1 1916 160 36 21 chr1 67680163 67680194 -174984159 + L1MB5 LINE L1 6137 6166 -8 376 325 17 17 chr1 67680199 67680319 -174984034 + L3 LINE CR1 1425 1544 -33 320 249 254 5 chr1 67680334 67680523 -174983830 + MIR SINE MIR 13 248 -14 371 292 34 96 chr1 67681323 67681550 -174982803 + MIR SINE MIR 4 221 -41 1820 182 14 0 chr1 67681553 67681850 -174982503 - AluSx SINE Alu -7 305 5 581 301 87 9 chr1 67681865 67682094 -174982259 - MIR SINE MIR -14 248 2 201 133 0 0 chr1 67682434 67682464 -174981889 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 197 296 197 8 chr1 67683305 67683437 -174980916 + MIR SINE MIR 100 256 -6 708 323 81 43 chr1 67683553 67684045 -174980308 + L2 LINE L2 2273 2783 -531 276 299 11 11 chr1 67684043 67684130 -174980223 + L2 LINE L2 3225 3311 -2 * 265 75 0 0 chr1 67684157 67684197 -174980156 + MADE1 DNA Mariner 39 78 -2 2046 255 84 25 chr1 67684261 67685862 -174978491 - L1ME LINE L1 -4370 1710 20 265 320 55 61 chr1 67686883 67687064 -174977289 + MIR SINE MIR 29 208 -54 357 207 132 83 chr1 67687069 67687190 -174977163 + L2 LINE L2 3187 3313 0 21 36 0 0 chr1 67687429 67687457 -174976896 + AT_rich Low_complexity Low_complexity 1 28 0 246 284 0 112 chr1 67687725 67687859 -174976494 + MIR SINE MIR 58 176 -86 * 266 322 22 0 chr1 67687858 67687948 -174976405 - L2 LINE L2 -2 3311 3220 240 235 24 59 chr1 67687947 67688032 -174976321 + MIR SINE MIR 170 251 -11 * 2474 72 0 0 chr1 67688055 67688360 -174975993 + AluY SINE Alu 1 305 -6 414 69 0 0 chr1 67689820 67689878 -174974475 + (TG)n Simple_repeat Simple_repeat 2 59 0 332 322 51 40 chr1 67690120 67690297 -174974056 + MER5A DNA MER1_type 11 189 0 202 226 345 12 chr1 67690406 67690490 -174973863 - MER5A DNA MER1_type -38 151 40 309 256 103 8 chr1 67691913 67692030 -174972323 - MER94 DNA DNA -4 130 3 928 152 136 0 chr1 67693509 67693693 -174970660 - MER3 DNA MER1_type 0 209 1 666 277 31 5 chr1 67693824 67694048 -174970305 + LTR16B LTR ERVL 235 464 0 294 246 114 35 chr1 67694716 67694830 -174969523 - L2 LINE L2 0 3272 3150 347 265 149 44 chr1 67695360 67695609 -174968744 - MLT1J LTR MaLR -23 488 214 384 274 127 0 chr1 67696533 67696690 -174967663 - MIR SINE MIR -31 231 55 390 264 48 43 chr1 67696767 67696933 -174967420 - MIR SINE MIR -54 208 45 281 278 37 9 chr1 67697047 67697155 -174967198 - MER81 DNA DNA 0 114 4 731 238 39 0 chr1 67697436 67697617 -174966736 - MER5A DNA MER1_type 0 189 2 297 130 56 0 chr1 67697646 67697700 -174966653 + Charlie7 DNA MER1_type 40 96 -2516 8353 212 78 7 chr1 67697745 67699506 -174964847 + L1M2 LINE L1 3 1888 -4961 3957 152 22 31 chr1 67699494 67700573 -174963780 + L1M2 LINE L1 2144 3210 -3638 * 2103 164 0 29 chr1 67700573 67700920 -174963433 + MER1B DNA MER1_type 1 337 0 7279 44 2 2 chr1 67700939 67702623 -174961730 + L1PA5 LINE L1 4474 6146 -8 5392 115 60 11 chr1 67702630 67703586 -174960767 + L1MA4A LINE L1 5297 6298 -5 22 70 0 0 chr1 67703612 67703655 -174960698 + AT_rich Low_complexity Low_complexity 1 43 0 677 217 49 54 chr1 67703854 67704038 -174960315 + MER5A DNA MER1_type 1 183 -6 348 222 24 32 chr1 67704300 67704426 -174959927 - MER53 DNA DNA -24 165 41 498 341 141 14 chr1 67704439 67704729 -174959624 + L2 LINE L2 2943 3269 -3 244 242 204 21 chr1 67704866 67705026 -174959327 + MIR SINE MIR 4 197 -58 535 237 172 30 chr1 67705203 67705401 -174958952 - MIR SINE MIR -23 239 14 623 257 53 20 chr1 67705780 67706025 -174958328 + MLT1L LTR MaLR 19 271 -344 325 354 82 6 chr1 67706343 67706501 -174957852 + L2 LINE L2 3103 3272 0 227 354 12 0 chr1 67706684 67706766 -174957587 + L2 LINE L2 3231 3313 0 205 202 56 41 chr1 67706933 67707051 -174957302 - MIR SINE MIR -7 201 85 2477 83 0 0 chr1 67707407 67707709 -174956644 + AluSg SINE Alu 1 302 -8 185 333 101 0 chr1 67707748 67707886 -174956467 - MIR SINE MIR -15 247 96 437 264 106 16 chr1 67708264 67708429 -174955924 + MIR SINE MIR 1 175 -62 654 226 41 36 chr1 67709599 67709794 -174954559 - LTR16C LTR ERVL 0 491 296 305 305 72 95 chr1 67710016 67710078 -174954275 + L2 LINE L2 2804 2866 -406 2506 113 11 8 chr1 67710078 67710432 -174953921 + THE1A LTR MaLR 1 355 0 305 305 72 95 chr1 67710432 67710844 -174953509 + L2 LINE L2 2866 3267 -5 188 277 0 0 chr1 67711062 67711109 -174953244 - L2 LINE L2 -4 3309 3263 406 316 138 28 chr1 67711335 67711582 -174952771 + L2 LINE L2 2992 3265 -7 237 291 0 38 chr1 67713446 67713525 -174950828 - L2 LINE L2 -55 3258 3183 438 285 35 66 chr1 67714061 67714207 -174950146 - L2 LINE L2 -875 2439 2301 2086 135 6 13 chr1 67714207 67714518 -174949835 - AluSx SINE Alu -3 309 1 438 285 35 66 chr1 67714518 67714599 -174949754 - L2 LINE L2 -1013 2301 2219 244 293 0 13 chr1 67714706 67714781 -174949572 + L2 LINE L2 3225 3298 -15 206 336 101 0 chr1 67715249 67715398 -174948955 + MIR SINE MIR 28 191 -71 389 282 76 36 chr1 67715724 67716032 -174948321 + MLT1K LTR MaLR 162 568 -20 1330 271 75 56 chr1 67716039 67716610 -174947743 - MLT1G LTR MaLR 0 590 9 257 180 0 0 chr1 67716776 67716826 -174947527 - U5 snRNA snRNA -66 50 1 207 320 13 13 chr1 67716895 67716970 -174947383 - MIR3 SINE MIR -2 206 132 * 213 316 26 13 chr1 67716968 67717044 -174947309 - L2 LINE L2 -4 3268 3192 1744 170 42 0 chr1 67717072 67717361 -174946992 + AluJo SINE Alu 1 301 -11 207 0 0 0 chr1 67717367 67717390 -174946963 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 204 40 0 0 chr1 67717451 67717476 -174946877 + (TA)n Simple_repeat Simple_repeat 1 25 0 286 224 0 82 chr1 67717562 67717647 -174946706 + MER103 DNA DNA 14 91 -75 482 271 29 29 chr1 67718832 67718972 -174945381 - MIR SINE MIR -108 154 15 627 171 39 16 chr1 67719054 67719183 -174945170 + MIR SINE MIR 65 196 -66 1825 219 12 28 chr1 67719541 67720007 -174944346 + MER89 LTR ERV1 1 557 -2 884 254 46 68 chr1 67720011 67720220 -174944133 + MER89-int LTR ERV1 2 204 -6597 2054 110 7 0 chr1 67720220 67720538 -174943815 - AluSq SINE Alu 0 320 1 884 254 46 68 chr1 67720538 67720634 -174943719 + MER89-int LTR ERV1 204 301 -6500 978 240 61 8 chr1 67720716 67720962 -174943391 + MER89-int LTR ERV1 460 718 -6083 6552 229 31 41 chr1 67721183 67722854 -174941499 + MER89-int LTR ERV1 890 2543 -4258 192 40 0 0 chr1 67722873 67722898 -174941455 + (GA)n Simple_repeat Simple_repeat 2 26 0 197 0 0 67 chr1 67722991 67723021 -174941332 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 257 299 0 35 chr1 67723035 67723122 -174941231 + MER89-int LTR ERV1 3426 3509 -4748 816 265 108 0 chr1 67723210 67723414 -174940939 + MER89-int LTR ERV1 2547 2772 -4029 216 0 0 0 chr1 67723414 67723438 -174940915 + (TA)n Simple_repeat Simple_repeat 2 25 0 7407 51 13 2 chr1 67723438 67724704 -174939649 - L1PA5 LINE L1 -7 6147 4873 28588 49 5 1 chr1 67724804 67728692 -174935661 - L1P2 LINE L1 -412 5742 1844 42887 59 4 1 chr1 67728697 67734366 -174929987 + L1P2 LINE L1 7 5686 -468 5482 58 0 0 chr1 67734466 67735107 -174929246 + L1PA4 LINE L1 5513 6153 -2 13487 102 2 3 chr1 67735113 67736972 -174927381 - L1P2 LINE L1 -4288 1858 1 1139 201 34 8 chr1 67736992 67737231 -174927122 + MER89-int LTR ERV1 2786 3030 -3771 520 219 9 0 chr1 67737251 67737356 -174926997 + MER89-int LTR ERV1 5757 5862 -939 3227 257 33 25 chr1 67737427 67738310 -174926043 + MER89-int LTR ERV1 3053 3942 -2859 9741 233 49 23 chr1 67738322 67740663 -174923690 + MER89-int LTR ERV1 4400 6801 0 1576 211 16 89 chr1 67740679 67740873 -174923480 + MER89 LTR ERV1 23 230 -329 2934 79 8 16 chr1 67740873 67741240 -174923113 - THE1B LTR MaLR 0 364 1 1576 211 16 89 chr1 67741240 67741520 -174922833 + MER89 LTR ERV1 230 559 0 330 172 131 61 chr1 67742125 67742224 -174922129 - MIR SINE MIR -142 120 15 850 206 137 39 chr1 67742381 67742522 -174921831 - MER58A DNA MER1_type -2196 224 56 2111 119 3 10 chr1 67742522 67742844 -174921509 + AluSg SINE Alu 1 310 0 850 206 137 39 chr1 67742844 67742906 -174921447 - MER58A DNA MER1_type -2364 56 1 342 317 172 5 chr1 67742972 67743157 -174921196 - MIR SINE MIR -17 245 14 189 0 0 0 chr1 67743933 67743954 -174920399 + (T)n Simple_repeat Simple_repeat 1 21 0 345 208 52 31 chr1 67744070 67744166 -174920187 - LTR67 LTR ERVL -22 535 438 255 215 0 0 chr1 67744287 67744352 -174920001 + G-rich Low_complexity Low_complexity 2 66 0 257 273 34 23 chr1 67744948 67745036 -174919317 + L2 LINE L2 3179 3267 -5 453 36 0 0 chr1 67745789 67745844 -174918509 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 475 279 48 78 chr1 67745862 67746131 -174918222 - L2 LINE L2 0 3313 3053 455 299 54 6 chr1 67746178 67746345 -174918008 - MIR SINE MIR -86 176 2 305 267 89 10 chr1 67746930 67747031 -174917322 + L2 LINE L2 3164 3272 0 575 122 30 0 chr1 67747236 67747367 -174916986 + (TCTA)n Simple_repeat Simple_repeat 1 135 0 297 0 0 0 chr1 67747800 67747833 -174916520 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 263 228 177 13 chr1 67748032 67748111 -174916242 - LTR33A LTR ERVL -19 504 413 446 303 12 125 chr1 67748815 67749215 -174915138 - L2 LINE L2 -4 3268 2914 547 265 45 40 chr1 67749733 67749933 -174914420 - MIR SINE MIR -48 214 14 327 318 98 23 chr1 67750133 67750306 -174914047 - MIR SINE MIR -57 205 20 194 373 0 0 chr1 67750407 67750474 -174913879 - L2 LINE L2 -2 3311 3245 214 225 0 0 chr1 67750561 67750601 -174913752 - MIR3 SINE MIR -16 192 153 352 286 46 35 chr1 67750625 67750831 -174913522 + L1P LINE L1 3710 3918 -2228 510 165 8 126 chr1 67750914 67751041 -174913312 + MER7A DNA MER2_type 2 111 -235 22 0 0 0 chr1 67751043 67751065 -174913288 + AT_rich Low_complexity Low_complexity 1 22 0 802 197 23 0 chr1 67751065 67751197 -174913156 - AluJo SINE Alu -176 136 2 1082 173 101 0 chr1 67751198 67751406 -174912947 + MER7A DNA MER2_type 95 323 -14 614 298 98 41 chr1 67751479 67752291 -174912062 + L1MC4a LINE L1 4487 5345 -801 990 233 273 10 chr1 67752297 67752697 -174911656 + L1MC4a LINE L1 5407 5911 -1897 234 0 0 0 chr1 67752777 67752803 -174911550 + (T)n Simple_repeat Simple_repeat 1 26 0 246 105 0 0 chr1 67753273 67753311 -174911042 + (T)n Simple_repeat Simple_repeat 1 38 0 209 321 24 12 chr1 67753599 67753683 -174910670 + MIR SINE MIR 178 262 0 571 296 10 39 chr1 67755076 67755279 -174909074 - MIR SINE MIR -57 205 9 362 245 221 6 chr1 67755806 67755969 -174908384 + MIR SINE MIR 65 262 0 23 22 0 44 chr1 67757373 67757393 -174906960 + AT_rich Low_complexity Low_complexity 1 20 -23 2129 107 0 30 chr1 67757393 67757692 -174906661 - AluSc SINE Alu -19 290 1 23 22 0 44 chr1 67757692 67757716 -174906637 + AT_rich Low_complexity Low_complexity 20 43 0 263 358 150 10 chr1 67757944 67758137 -174906216 + MIR SINE MIR 13 232 -30 190 364 52 69 chr1 67759370 67759543 -174904810 - L2 LINE L2 -17 3255 3086 510 134 161 18 chr1 67759584 67759696 -174904657 + MER63 DNA MER1_type 5 758 -78 447 19 0 0 chr1 67759752 67759804 -174904549 + (TG)n Simple_repeat Simple_repeat 2 53 0 344 331 16 0 chr1 67759804 67759931 -174904422 - L2 LINE L2 -220 3052 2924 1949 181 138 16 chr1 67760279 67760727 -174903626 + MLT1D LTR MaLR 1 503 -2 559 274 107 5 chr1 67760745 67760942 -174903411 + MIR SINE MIR 2 218 -44 222 37 0 0 chr1 67761331 67761358 -174902995 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr1 67762183 67762206 -174902147 + AT_rich Low_complexity Low_complexity 1 23 0 598 191 0 28 chr1 67762214 67762355 -174901998 - L1MA7 LINE L1 -4 6287 6151 183 329 37 37 chr1 67762458 67762540 -174901813 + L2 LINE L2 3185 3266 -6 806 220 21 17 chr1 67762656 67762897 -174901456 - Charlie2 DNA MER1_type -491 2371 2130 254 327 82 31 chr1 67763184 67763343 -174901010 - MER117 DNA MER1_type -20 177 11 2233 119 3 0 chr1 67763513 67763807 -174900546 + AluSp SINE Alu 1 295 -18 903 248 45 7 chr1 67764135 67764421 -174899932 - HAL1b LINE L1 -471 877 581 3473 35 0 12 chr1 67764541 67764971 -174899382 - L1PA5 LINE L1 -1 6153 5729 2134 31 0 0 chr1 67764971 67765227 -174899126 + L1PA5 LINE L1 5467 5722 -432 187 386 96 34 chr1 67765968 67766292 -174898061 - L2 LINE L2 -123 3149 2806 297 310 137 20 chr1 67766585 67766782 -174897571 + MIR SINE MIR 31 250 -12 422 275 62 45 chr1 67767229 67767407 -174896946 - MIR SINE MIR -5 257 77 825 262 101 51 chr1 67767439 67767906 -174896447 - MLT1H LTR MaLR 0 549 18 318 324 55 9 chr1 67767980 67768113 -174896240 - MIR SINE MIR -63 145 11 201 308 0 0 chr1 67768150 67768202 -174896151 - L3 LINE CR1 -2 1575 1524 607 346 113 38 chr1 67768470 67768975 -174895378 - L3 LINE CR1 -30 1547 1005 6177 40 0 1 chr1 67768985 67769728 -174894625 - L1PA5 LINE L1 -1 6153 5412 1387 43 0 0 chr1 67769728 67769915 -174894438 + L1PA5 LINE L1 5217 5403 -743 335 348 49 87 chr1 67770133 67770420 -174893933 - L2 LINE L2 -9 3263 2988 381 313 204 0 chr1 67770472 67770648 -174893705 + MIR SINE MIR 20 231 -31 22 56 0 0 chr1 67771216 67771252 -174893101 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 67771478 67771510 -174892843 + AT_rich Low_complexity Low_complexity 1 32 0 3839 247 76 39 chr1 67771528 67771647 -174892706 - L1MC4 LINE L1 -40 8002 7889 360 0 0 0 chr1 67771647 67771687 -174892666 + (CA)n Simple_repeat Simple_repeat 1 40 0 3839 247 76 39 chr1 67771687 67772485 -174891868 - L1MC4 LINE L1 -153 7889 7122 1181 19 31 0 chr1 67772485 67772644 -174891709 + (TCTA)n Simple_repeat Simple_repeat 1 164 0 3839 247 76 39 chr1 67772644 67774100 -174890253 - L1MC4 LINE L1 -920 7122 5517 219 182 23 0 chr1 67776247 67776291 -174888062 - L2 LINE L2 0 3313 3269 319 85 0 0 chr1 67777106 67777153 -174887200 - MER4C LTR ERV1 -2 463 417 * 4279 144 26 26 chr1 67777150 67777928 -174886425 - MER4D LTR ERV1 -125 778 1 22 0 0 0 chr1 67778557 67778579 -174885774 + AT_rich Low_complexity Low_complexity 1 22 0 194 136 23 0 chr1 67778814 67778858 -174885495 + (CA)n Simple_repeat Simple_repeat 2 46 0 1980 158 7 7 chr1 67778995 67779298 -174885055 + AluJb SINE Alu 6 308 -4 25 31 0 0 chr1 67779822 67779854 -174884499 + AT_rich Low_complexity Low_complexity 1 32 0 2009 171 19 38 chr1 67780013 67780440 -174883913 - MSTB1 LTR MaLR -13 419 1 567 328 81 21 chr1 67781792 67782076 -174882277 + L3 LINE CR1 966 1266 -311 246 259 19 0 chr1 67782092 67782146 -174882207 + L2 LINE L2 3188 3242 -30 355 332 168 0 chr1 67782152 67782354 -174881999 - MIR SINE MIR 0 262 27 268 312 154 7 chr1 67782479 67782609 -174881744 - MIR SINE MIR -69 139 2 352 231 34 51 chr1 67782915 67783032 -174881321 - MIR SINE MIR -72 190 76 6320 168 23 1 chr1 67783035 67785056 -174879297 + L1PA13 LINE L1 4131 6144 -19 1912 148 154 8 chr1 67785370 67785741 -174878612 - MSTA LTR MaLR 0 428 4 8908 145 14 40 chr1 67785744 67787364 -174876989 - MSTA-int LTR MaLR 0 1580 3 1347 138 115 77 chr1 67787366 67787554 -174876799 - THE1C LTR MaLR 0 375 195 180 0 0 0 chr1 67787554 67787574 -174876779 + (GA)n Simple_repeat Simple_repeat 2 21 0 1347 138 115 77 chr1 67787574 67787734 -174876619 - THE1C LTR MaLR -180 195 14 262 278 0 0 chr1 67787822 67787884 -174876469 - MIR SINE MIR -72 136 74 347 231 87 29 chr1 67788486 67788590 -174875763 + L2 LINE L2 2224 2333 -981 902 271 18 58 chr1 67788596 67789053 -174875300 + L2 LINE L2 2725 3164 -149 331 352 8 0 chr1 67789363 67789491 -174874862 - L1MC4a LINE L1 -1799 6009 5881 656 264 69 0 chr1 67789520 67789751 -174874602 - L1ME3 LINE L1 -29 6133 5887 574 250 113 72 chr1 67789931 67790130 -174874223 - L1ME3 LINE L1 -2144 5664 5446 1790 52 145 26 chr1 67790130 67790399 -174873954 - AluY SINE Alu 0 301 1 574 250 113 72 chr1 67790399 67790519 -174873834 - L1ME3 LINE L1 -2362 5446 5332 317 323 76 59 chr1 67790528 67791052 -174873301 - L1ME3 LINE L1 -824 5322 4790 34 55 0 0 chr1 67791515 67791570 -174872783 + AT_rich Low_complexity Low_complexity 1 55 0 5370 128 25 3 chr1 67791574 67792440 -174871913 + L1MC1 LINE L1 5447 6331 -2 251 289 82 10 chr1 67792441 67792538 -174871815 - L2 LINE L2 -9 3263 3160 291 253 167 43 chr1 67792600 67792762 -174871591 + MIR SINE MIR 7 188 -74 499 191 0 45 chr1 67793560 67793670 -174870683 + MIR SINE MIR 97 201 -61 2341 143 28 79 chr1 67793672 67794265 -174870088 - L1M2 LINE L1 -563 5749 5188 14602 165 118 26 chr1 67794273 67798951 -174865402 - L1MA3 LINE L1 0 7724 2171 2248 55 3 58 chr1 67798951 67799261 -174865092 - AluY SINE Alu -18 293 1 14602 165 118 26 chr1 67799261 67801639 -174862714 - L1MA3 LINE L1 -5553 2171 14 245 288 0 0 chr1 67801638 67801711 -174862642 - L1M2 LINE L1 -942 5204 5132 * 2165 207 31 6 chr1 67801713 67802200 -174862153 + L1M2 LINE L1 4621 5119 -1027 334 240 90 30 chr1 67802212 67802312 -174862041 + L2 LINE L2 3208 3313 0 343 238 271 8 chr1 67802823 67802945 -174861408 + MIR SINE MIR 61 214 -48 413 284 64 50 chr1 67803574 67803792 -174860561 + MIR SINE MIR 28 248 -14 688 360 84 12 chr1 67805324 67805988 -174858365 - L2 LINE L2 -218 3054 2342 305 284 21 0 chr1 67806028 67806123 -174858230 - L2 LINE L2 -1293 2021 1925 514 248 148 19 chr1 67806286 67806496 -174857857 - MIR SINE MIR -13 249 13 2223 90 14 0 chr1 67806553 67806842 -174857511 + AluY SINE Alu 4 296 -15 3524 115 43 40 chr1 67806843 67807176 -174857177 + MER4B LTR ERV1 1 338 -272 480 67 27 0 chr1 67807176 67807251 -174857102 + L1PB1 LINE L1 6070 6146 -5 3524 115 43 40 chr1 67807251 67807525 -174856828 + MER4B LTR ERV1 338 610 0 1184 110 153 0 chr1 67807527 67807755 -174856598 + MER4B-int LTR ERV1 1 263 -6335 242 253 36 48 chr1 67807783 67807866 -174856487 + LTR33 LTR ERVL 78 159 -362 242 214 71 24 chr1 67807956 67808040 -174856313 + LTR33A LTR ERVL 303 390 -133 369 319 85 21 chr1 67808272 67808460 -174855893 - MIR SINE MIR -50 212 13 188 339 32 0 chr1 67808966 67809028 -174855325 - MIR SINE MIR -109 99 36 220 361 134 26 chr1 67809696 67809890 -174854463 + L2 LINE L2 2845 3059 -213 249 267 70 12 chr1 67810859 67810945 -174853408 + MIR SINE MIR 96 186 -76 309 197 0 0 chr1 67810955 67811026 -174853327 + (TTCA)n Simple_repeat Simple_repeat 4 74 0 261 257 117 70 chr1 67811035 67811206 -174853147 - L2 LINE L2 0 3313 3135 469 263 5 124 chr1 67812306 67812389 -174851964 + MIR SINE MIR 14 105 -157 629 155 0 0 chr1 67812389 67812486 -174851867 - L1MD2 LINE L1 -7 6352 6256 469 263 5 124 chr1 67812486 67812619 -174851734 + MIR SINE MIR 105 204 -58 403 154 0 15 chr1 67812701 67812766 -174851587 + THE1C LTR MaLR 1 64 -311 2207 130 6 0 chr1 67812801 67813123 -174851230 + THE1C LTR MaLR 52 375 0 13241 164 67 34 chr1 67813281 67813784 -174850569 - Tigger1 DNA MER2_type -2 2416 1931 1579 129 27 0 chr1 67813784 67814008 -174850345 + MER30 DNA MER1_type 1 230 0 13241 164 67 34 chr1 67814008 67815154 -174849199 - Tigger1 DNA MER2_type -487 1931 665 1644 164 0 31 chr1 67815154 67815446 -174848907 + AluJo SINE Alu 30 312 0 13241 164 67 34 chr1 67815446 67816133 -174848220 - Tigger1 DNA MER2_type -1753 665 2 216 329 0 0 chr1 67816369 67816439 -174847914 + CT-rich Low_complexity Low_complexity 3 72 0 327 265 34 48 chr1 67816440 67816587 -174847766 - L1ME LINE L1 -393 5728 5584 366 325 41 47 chr1 67816619 67816797 -174847556 - MER5B DNA MER1_type -2 187 1 294 316 26 26 chr1 67816802 67816919 -174847434 + L3 LINE CR1 666 782 -795 240 285 133 26 chr1 67816940 67817091 -174847262 - MIR SINE MIR -10 252 86 292 281 9 79 chr1 67817279 67817393 -174846960 + MER5A DNA MER1_type 1 106 -83 996 129 42 47 chr1 67817404 67817589 -174846764 - L1P4 LINE L1 -390 5776 5591 10476 135 9 8 chr1 67817589 67820021 -174844332 - L1PA11 LINE L1 0 6174 3746 199 269 39 0 chr1 67820033 67820085 -174844268 + MER5A DNA MER1_type 136 189 0 382 248 159 21 chr1 67820212 67820357 -174843996 + L3 LINE CR1 1084 1248 -329 4637 102 24 23 chr1 67820923 67820995 -174843358 + L1MA2 LINE L1 5607 5677 -627 2886 107 3 0 chr1 67820995 67821358 -174842995 - THE1B LTR MaLR 0 364 1 11412 98 50 1 chr1 67821358 67822864 -174841489 - THE1B-int LTR MaLR 0 1580 1 2597 124 22 0 chr1 67822864 67823220 -174841133 - THE1B LTR MaLR 0 364 1 4637 102 24 23 chr1 67823220 67823841 -174840512 + L1MA2 LINE L1 5676 6303 -1 22 0 0 0 chr1 67823842 67823864 -174840489 + AT_rich Low_complexity Low_complexity 1 22 0 253 248 106 26 chr1 67824211 67824324 -174840029 - MIR SINE MIR -78 184 63 378 358 79 23 chr1 67824790 67825005 -174839348 - MIR SINE MIR -26 236 10 290 298 195 5 chr1 67825222 67825427 -174838926 + MIR SINE MIR 19 262 0 491 358 49 9 chr1 67826398 67826624 -174837729 + MIR SINE MIR 22 256 -6 378 253 174 17 chr1 67827300 67827478 -174836875 + L2 LINE L2 2172 2377 -937 633 200 7 7 chr1 67827608 67827743 -174836610 + MIR SINE MIR 102 236 -26 218 318 184 25 chr1 67827915 67828116 -174836237 + L2 LINE L2 2640 2872 -442 255 275 43 0 chr1 67828487 67828556 -174835797 + L2 LINE L2 3200 3271 -1 279 330 34 0 chr1 67828584 67828672 -174835681 - MIR3 SINE MIR -44 164 74 649 61 20 0 chr1 67829061 67829160 -174835193 + (TG)n Simple_repeat Simple_repeat 2 102 0 267 182 0 18 chr1 67829441 67829496 -174834857 - MIR SINE MIR -93 115 62 201 305 47 39 chr1 67830057 67830185 -174834168 + L3 LINE CR1 1337 1465 -112 292 320 64 16 chr1 67830630 67830755 -174833598 + L2 LINE L2 3140 3270 -2 237 324 0 14 chr1 67831004 67831075 -174833278 + L2 LINE L2 3185 3254 -18 188 338 0 29 chr1 67831081 67831149 -174833204 - L2 LINE L2 -7 3265 3200 624 259 60 0 chr1 67831651 67831817 -174832536 - LTR33 LTR ERVL -336 185 10 280 360 56 0 chr1 67832362 67832487 -174831866 + L2 LINE L2 3139 3270 -2 291 337 126 23 chr1 67832931 67833106 -174831247 + L2 LINE L2 3078 3270 -2 219 313 24 12 chr1 67833346 67833429 -174830924 + L2 LINE L2 3225 3308 -5 349 295 80 9 chr1 67833560 67833672 -174830681 - MIR3 SINE MIR -53 155 36 1844 164 0 25 chr1 67833851 67834168 -174830185 + AluSx SINE Alu 1 309 -3 315 285 200 15 chr1 67834841 67834971 -174829382 - MIR SINE MIR -56 206 53 876 264 84 47 chr1 67835005 67835414 -174828939 - MLT1J2 LTR MaLR 0 450 26 1846 181 69 23 chr1 67835913 67836262 -174828091 - MLT1A1 LTR MaLR 0 365 1 211 267 13 27 chr1 67836928 67837003 -174827350 + MIR SINE MIR 172 245 -17 332 216 72 45 chr1 67837485 67837596 -174826757 + L2 LINE L2 3159 3272 0 579 285 6 13 chr1 67837666 67837824 -174826529 + MER5B DNA MER1_type 1 157 -21 362 309 78 37 chr1 67837895 67838112 -174826241 + L2 LINE L2 2839 3064 -208 290 265 8 76 chr1 67838508 67838640 -174825713 - MIR SINE MIR -112 150 28 521 276 67 91 chr1 67838664 67838874 -174825479 + L2 LINE L2 3068 3272 0 191 190 43 0 chr1 67839359 67839475 -174824878 + (CAAA)n Simple_repeat Simple_repeat 2 122 0 1024 267 58 34 chr1 67841559 67841987 -174822366 + MLT1J2 LTR MaLR 1 446 0 276 290 65 19 chr1 67842525 67842632 -174821721 + MLT1J LTR MaLR 323 434 -77 1362 100 0 38 chr1 67842722 67842963 -174821390 + AluY SINE Alu 109 311 0 196 364 0 0 chr1 67843509 67843586 -174820767 + L2 LINE L2 3173 3249 -23 942 127 6 54 chr1 67844483 67844649 -174819704 - L1PA8 LINE L1 0 6172 6015 296 261 169 21 chr1 67846943 67847085 -174817268 + MIR SINE MIR 81 243 -19 332 322 48 48 chr1 67847101 67847247 -174817106 + MIR SINE MIR 6 151 -111 292 344 44 0 chr1 67847568 67847728 -174816625 + L2 LINE L2 2640 2806 -508 2306 94 3 7 chr1 67847905 67848213 -174816140 - AluSg SINE Alu -3 307 1 2332 106 3 0 chr1 67848708 67849009 -174815344 + AluSx SINE Alu 3 304 -8 23 33 0 0 chr1 67850460 67850490 -174813863 + AT_rich Low_complexity Low_complexity 1 30 0 376 238 8 33 chr1 67850537 67850659 -174813694 + CT-rich Low_complexity Low_complexity 2 120 0 2247 160 23 16 chr1 67850978 67851365 -174812988 + MLT1B LTR MaLR 1 390 0 490 199 92 31 chr1 67851446 67851642 -174812711 + L1ME4a LINE L1 5910 6117 -4 182 337 120 33 chr1 67852585 67852677 -174811676 - MIR SINE MIR -92 116 17 529 279 45 17 chr1 67852686 67852865 -174811488 + MIR SINE MIR 65 248 -14 194 214 0 24 chr1 67853213 67853255 -174811098 - MIR SINE MIR -71 137 97 580 344 22 4 chr1 67853546 67853776 -174810577 - MLT1K LTR MaLR -275 313 80 644 290 131 14 chr1 67853899 67854189 -174810164 + LTR16C LTR ERVL 166 489 -2 265 61 0 0 chr1 67854478 67854511 -174809842 - MLT1I LTR MaLR -279 130 98 2322 187 88 4 chr1 67854739 67855205 -174809148 + MLT1D LTR MaLR 1 505 0 366 340 93 0 chr1 67855209 67855359 -174808994 - MIR SINE MIR -52 210 47 2097 177 32 11 chr1 67855611 67855989 -174808364 + MLT1B LTR MaLR 1 386 -4 319 369 12 12 chr1 67856545 67856705 -174807648 - MLT1J2 LTR MaLR -2 448 289 294 342 42 31 chr1 67857055 67857248 -174807105 + MLT1J2 LTR MaLR 254 448 -2 242 292 52 42 chr1 67857625 67857721 -174806632 + L2 LINE L2 3176 3272 0 410 274 89 16 chr1 67858374 67858498 -174805855 + MIR SINE MIR 4 136 -126 207 0 0 0 chr1 67858528 67858551 -174805802 + (TA)n Simple_repeat Simple_repeat 1 23 0 342 309 41 27 chr1 67858622 67858855 -174805498 - L1ME3 LINE L1 -235 5929 5695 6149 209 93 63 chr1 67859012 67859581 -174804772 - L1MC3 LINE L1 -7 7778 7227 345 258 11 0 chr1 67859581 67859670 -174804683 - MLT1F1 LTR MaLR -443 124 35 6149 209 93 63 chr1 67859670 67859989 -174804364 - L1MC3 LINE L1 -558 7227 6919 2153 160 108 0 chr1 67859989 67860376 -174803977 + MSTB1 LTR MaLR 4 432 0 6149 209 93 63 chr1 67860376 67860868 -174803485 - L1MC3 LINE L1 -866 6919 6443 189 0 0 0 chr1 67860868 67860889 -174803464 + (TTA)n Simple_repeat Simple_repeat 2 22 0 6149 209 93 63 chr1 67860889 67861470 -174802883 - L1MC3 LINE L1 -1342 6443 5669 379 307 53 102 chr1 67861470 67861982 -174802371 - L1M4 LINE L1 -2417 3729 3243 42415 36 22 1 chr1 67862012 67868037 -174796316 - L1PA2 LINE L1 0 6155 2 369 279 62 11 chr1 67868071 67868347 -174796006 - L1M4 LINE L1 -3084 3062 2773 556 298 145 27 chr1 67868459 67868872 -174795481 - L1M4 LINE L1 -3531 2615 2154 211 282 0 24 chr1 67868933 67869018 -174795335 + T-rich Low_complexity Low_complexity 5 87 0 334 366 92 46 chr1 67869038 67869475 -174794878 - HAL1 LINE L1 -880 1627 1171 26 30 0 0 chr1 67869688 67869721 -174794632 + AT_rich Low_complexity Low_complexity 1 33 0 550 39 13 13 chr1 67870276 67870354 -174793999 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 293 302 11 44 chr1 67871256 67871438 -174792915 + CT-rich Low_complexity Low_complexity 1 176 0 221 333 142 23 chr1 67872201 67872420 -174791933 + L2 LINE L2 1974 2218 -1096 189 313 36 18 chr1 67872621 67872733 -174791620 - MIR SINE MIR -28 234 121 278 291 159 33 chr1 67872764 67872915 -174791438 - LTR67 LTR ERVL -32 525 356 198 0 0 0 chr1 67873136 67873158 -174791195 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 960 90 0 15 chr1 67873158 67873284 -174791069 - L1PA10 LINE L1 -21 6147 6022 213 121 0 0 chr1 67873849 67873882 -174790471 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 588 258 58 21 chr1 67874003 67874193 -174790160 - MIR SINE MIR -50 212 16 1513 168 13 78 chr1 67874559 67874673 -174789680 - AluJo SINE Alu -20 292 172 2478 122 3 14 chr1 67874673 67875041 -174789312 + THE1B LTR MaLR 1 364 0 1513 168 13 78 chr1 67875041 67875235 -174789118 - AluJo SINE Alu -140 172 4 33 0 0 0 chr1 67875238 67875271 -174789082 + AT_rich Low_complexity Low_complexity 1 33 0 277 284 27 0 chr1 67875279 67875353 -174789000 - MIR SINE MIR -110 152 77 349 273 154 44 chr1 67875455 67875682 -174788671 + L1MCc LINE L1 857 1108 -5315 * 426 228 48 70 chr1 67875669 67875897 -174788456 + L1MCc LINE L1 1898 2309 -4813 1056 296 100 36 chr1 67875924 67876933 -174787420 + L1MEc LINE L1 55 1128 -5268 2913 301 48 52 chr1 67876983 67878535 -174785818 + L1ME2 LINE L1 35 1581 -4815 2712 237 38 52 chr1 67878529 67879758 -174784595 + L1ME2 LINE L1 4617 5988 -415 * 2371 78 0 0 chr1 67879758 67880054 -174784299 - AluY SINE Alu -15 296 1 2712 237 38 52 chr1 67880054 67880459 -174783894 + L1ME2 LINE L1 5988 6397 -6 318 25 0 0 chr1 67881090 67881130 -174783223 + MADE1 DNA Mariner 41 80 0 203 310 47 105 chr1 67881399 67881570 -174782783 - L2 LINE L2 -85 3187 3027 292 288 147 3 chr1 67882597 67882755 -174781598 - MIR3 SINE MIR -41 167 1 195 297 47 0 chr1 67883831 67883895 -174780458 - MIR SINE MIR -71 191 125 387 317 108 12 chr1 67884167 67884208 -174780145 - MIR SINE MIR -10 252 216 305 145 159 0 chr1 67884208 67884277 -174780076 + MER116 DNA Mariner 1 80 0 387 317 108 12 chr1 67884277 67884402 -174779951 - MIR SINE MIR -46 216 70 369 109 0 0 chr1 67885013 67885068 -174779285 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 309 316 53 53 chr1 67885488 67885643 -174778710 - L2 LINE L2 -220 3052 2895 195 42 0 0 chr1 67885643 67885667 -174778686 + (TG)n Simple_repeat Simple_repeat 2 25 0 309 316 53 53 chr1 67885667 67885736 -174778617 - L2 LINE L2 -376 2896 2828 216 308 33 33 chr1 67885792 67885883 -174778470 + L2 LINE L2 3132 3222 -50 22 35 0 0 chr1 67886172 67886201 -174778152 + AT_rich Low_complexity Low_complexity 1 29 0 204 125 0 0 chr1 67886846 67886878 -174777475 + (TAA)n Simple_repeat Simple_repeat 1 32 0 286 252 17 74 chr1 67886987 67887128 -174777225 - MIR SINE MIR -62 146 12 335 281 157 7 chr1 67887238 67887391 -174776962 + MIR SINE MIR 75 250 -12 235 248 168 9 chr1 67887707 67887820 -174776533 + MIR SINE MIR 9 139 -123 217 250 150 0 chr1 67887947 67888007 -174776346 - MIR SINE MIR -70 192 124 25 65 0 0 chr1 67888779 67888825 -174775528 + AT_rich Low_complexity Low_complexity 1 46 0 4311 217 105 8 chr1 67889263 67890594 -174773759 + Charlie1 DNA MER1_type 2 2761 0 24 0 0 0 chr1 67891146 67891170 -174773183 + AT_rich Low_complexity Low_complexity 1 24 0 531 311 47 61 chr1 67891354 67891698 -174772655 - MLT1J LTR MaLR -172 339 1 6271 146 30 33 chr1 67892387 67893531 -174770822 + L1MA7 LINE L1 4130 5261 -1030 1887 171 0 0 chr1 67893531 67893829 -174770524 + AluJb SINE Alu 1 298 -14 6271 146 30 33 chr1 67893829 67894851 -174769502 + L1MA7 LINE L1 5261 6285 -6 4861 142 50 24 chr1 67895009 67896015 -174768338 + L1MA7 LINE L1 5254 6285 -6 21 0 0 0 chr1 67896849 67896870 -174767483 + AT_rich Low_complexity Low_complexity 1 21 0 212 325 146 8 chr1 67896917 67897040 -174767313 + MIR SINE MIR 107 246 -16 250 353 45 38 chr1 67897131 67897264 -174767089 - L2 LINE L2 -14 3258 3125 308 295 33 41 chr1 67898397 67898519 -174765834 - HERVL LTR ERVL -496 5158 5038 444 250 65 18 chr1 67898643 67898811 -174765542 - HERVL LTR ERVL -810 4844 4669 223 208 19 0 chr1 67899329 67899382 -174764971 - L2 LINE L2 -339 2974 2921 240 240 13 80 chr1 67899486 67899561 -174764792 + MIR SINE MIR 94 163 -99 387 291 146 48 chr1 67899628 67899923 -174764430 - L2 LINE L2 -559 2755 2432 325 255 31 20 chr1 67900090 67900188 -174764165 - MIR SINE MIR -97 165 67 204 97 0 0 chr1 67900219 67900250 -174764103 + (CAA)n Simple_repeat Simple_repeat 2 32 0 448 304 47 97 chr1 67900253 67900654 -174763699 - L2 LINE L2 -21 3251 2871 1086 281 39 53 chr1 67900967 67901401 -174762952 - LTR16B LTR ERVL -3 461 34 7002 52 7 2 chr1 67901816 67903028 -174761325 - L1PA7 LINE L1 0 6154 4942 994 65 45 7 chr1 67903028 67903182 -174761171 - L1PA7 LINE L1 -2893 3253 3094 16612 91 10 4 chr1 67903191 67904915 -174759438 - L1P LINE L1 -1216 4930 3185 2801 7 0 0 chr1 67904915 67905218 -174759135 - AluYa5 SINE Alu -8 303 1 16612 91 10 4 chr1 67905218 67905857 -174758496 - L1P LINE L1 -2961 3185 2552 454 248 16 8 chr1 67905857 67905986 -174758367 - MER104 DNA Tc2 -50 130 1 1547 204 58 9 chr1 67906094 67906442 -174757911 - MLT1A1 LTR MaLR 0 365 1 422 324 29 0 chr1 67906623 67906759 -174757594 + MER91C DNA MER1_type 1 140 0 4452 152 23 21 chr1 67907253 67908048 -174756305 - L1PA16 LINE L1 0 6166 5371 1198 143 0 0 chr1 67908071 67908267 -174756086 - L1PA14 LINE L1 -1 6160 5965 1183 194 62 67 chr1 67908417 67908608 -174755745 + MLT1B LTR MaLR 22 212 -178 2544 150 11 28 chr1 67908608 67909042 -174755311 + MSTA LTR MaLR 1 427 -1 1183 194 62 67 chr1 67909042 67909221 -174755132 + MLT1B LTR MaLR 212 390 0 209 285 36 80 chr1 67909325 67909462 -174754891 - MIR SINE MIR -54 208 78 428 286 0 17 chr1 67910452 67910571 -174753782 + CT-rich Low_complexity Low_complexity 4 120 0 409 232 24 0 chr1 67910571 67910696 -174753657 + C-rich Low_complexity Low_complexity 5 132 0 * 784 173 3 24 chr1 67910667 67910962 -174753391 + CT-rich Low_complexity Low_complexity 1 289 0 244 270 74 140 chr1 67911264 67911549 -174752804 - L2 LINE L2 -337 2977 2712 338 252 216 27 chr1 67912053 67912164 -174752189 + MIR SINE MIR 23 154 -108 453 311 8 66 chr1 67912183 67912440 -174751913 + MLT1H LTR MaLR 23 264 -285 316 202 77 39 chr1 67912549 67912653 -174751700 + MLT1E LTR MaLR 486 593 0 1607 270 58 44 chr1 67912658 67913243 -174751110 + MLT1E LTR MaLR 1 593 0 1612 199 49 63 chr1 67913302 67913809 -174750544 + MLT1D LTR MaLR 6 505 0 266 267 69 10 chr1 67913918 67914019 -174750334 + MIR SINE MIR 155 261 -1 304 294 52 59 chr1 67914259 67914412 -174749941 + L3 LINE CR1 1198 1349 -228 205 257 18 115 chr1 67914918 67915031 -174749322 + L2 LINE L2 2750 2851 -463 182 320 20 20 chr1 67915133 67915183 -174749170 - L2 LINE L2 -102 3170 3121 251 307 11 23 chr1 67915337 67915425 -174748928 + L2 LINE L2 3227 3313 0 199 341 102 0 chr1 67915629 67915717 -174748636 - MIR SINE MIR -78 130 34 232 258 61 61 chr1 67916143 67916275 -174748078 + L1MEd LINE L1 576 707 -5412 234 0 0 0 chr1 67916876 67916902 -174747451 + (TA)n Simple_repeat Simple_repeat 2 27 0 2149 131 0 0 chr1 67916902 67917200 -174747153 - AluSx SINE Alu -14 298 1 28 79 0 0 chr1 67917446 67917509 -174746844 + AT_rich Low_complexity Low_complexity 1 63 0 30 0 0 0 chr1 67917521 67917551 -174746802 + AT_rich Low_complexity Low_complexity 1 30 0 243 336 9 18 chr1 67917671 67917784 -174746569 - L3 LINE CR1 -417 1160 1049 519 246 3 179 chr1 67917808 67918199 -174746154 - L3 LINE CR1 -631 946 625 2024 55 79 0 chr1 67918664 67918917 -174745436 - AluY SINE Alu -15 296 24 2293 258 100 32 chr1 67919296 67920351 -174744002 - L2 LINE L2 0 3313 2214 222 191 48 0 chr1 67920860 67920902 -174743451 - L3 LINE CR1 -1086 491 448 296 325 88 35 chr1 67921003 67921231 -174743122 - L3 LINE CR1 -1216 361 122 319 302 52 16 chr1 67921559 67921722 -174742631 + MIR SINE MIR 9 177 -62 335 344 97 19 chr1 67921725 67921879 -174742474 - L2 LINE L2 -1 3271 3106 607 266 203 14 chr1 67922293 67922500 -174741853 + MIR SINE MIR 16 261 -1 311 284 43 19 chr1 67922584 67922795 -174741558 + L1M4 LINE L1 4127 4342 -1804 360 279 0 39 chr1 67922806 67922910 -174741443 + MIR SINE MIR 52 151 -57 380 276 49 16 chr1 67923384 67923507 -174740846 + L2 LINE L2 3185 3311 -2 266 324 104 25 chr1 67924108 67924349 -174740004 + L1MEd LINE L1 648 907 -5298 423 326 39 32 chr1 67924516 67924798 -174739555 - MLT1I LTR MaLR -110 299 16 672 282 58 40 chr1 67924951 67925521 -174738832 + L1MEd LINE L1 1055 1662 -4734 2386 83 3 0 chr1 67925581 67925883 -174738470 - AluY SINE Alu -8 303 1 328 309 112 21 chr1 67926065 67926298 -174738055 + L1MEd LINE L1 1998 2251 -4145 267 282 28 7 chr1 67926305 67926447 -174737906 + L1MEd LINE L1 2216 2360 -3855 2337 99 0 0 chr1 67926811 67927105 -174737248 - AluY SINE Alu -17 294 1 216 0 0 0 chr1 67928167 67928191 -174736162 + (TG)n Simple_repeat Simple_repeat 1 24 0 184 169 0 31 chr1 67928191 67928256 -174736097 + GA-rich Low_complexity Low_complexity 2 64 0 363 303 68 8 chr1 67929448 67929580 -174734773 - MIR SINE MIR -70 192 53 451 320 31 51 chr1 67929808 67930064 -174734289 + MIR SINE MIR 6 256 -6 824 219 161 58 chr1 67930122 67930451 -174733902 + MLT1A1 LTR MaLR 1 363 -2 390 315 47 27 chr1 67930823 67930972 -174733381 - MIR3 SINE MIR -21 187 36 247 306 61 31 chr1 67931648 67931746 -174732607 + L2 LINE L2 3212 3312 -1 429 317 32 0 chr1 67931753 67931876 -174732477 + MIR SINE MIR 60 186 -76 240 365 52 9 chr1 67932276 67932391 -174731962 - MIR SINE MIR -114 148 29 282 276 147 17 chr1 67932739 67932855 -174731498 - MIR SINE MIR -11 251 121 * 320 270 11 0 chr1 67932852 67932941 -174731412 + L2 LINE L2 2730 2819 -495 2687 89 0 0 chr1 67933311 67933691 -174730662 - L1PA13 LINE L1 -386 5782 5403 2588 89 3 3 chr1 67933707 67934094 -174730259 + L1PA13 LINE L1 5794 6180 0 228 340 11 32 chr1 67935181 67935275 -174729078 - MIR SINE MIR -148 114 23 207 304 0 0 chr1 67935448 67935494 -174728859 - L3 LINE CR1 -98 1479 1434 343 359 35 6 chr1 67935613 67935783 -174728570 - MIR SINE MIR -20 242 68 935 199 57 14 chr1 67936066 67936277 -174728076 + MER58A DNA MER1_type 3 222 -2 441 84 0 0 chr1 67936570 67936641 -174727712 + (TC)n Simple_repeat Simple_repeat 2 72 0 189 0 0 0 chr1 67936641 67936662 -174727691 + (CA)n Simple_repeat Simple_repeat 1 21 0 955 318 153 32 chr1 67936892 67937583 -174726770 + L2 LINE L2 2284 3121 -192 672 167 183 33 chr1 67937583 67937763 -174726590 - MER6B DNA MER2_type 0 210 4 955 318 153 32 chr1 67937763 67937978 -174726375 + L2 LINE L2 3121 3309 -4 211 341 61 0 chr1 67938591 67938673 -174725680 - L2 LINE L2 -17 3255 3169 34114 54 6 3 chr1 67939142 67943863 -174720490 + L1P2 LINE L1 755 5487 -667 1239 49 0 0 chr1 67944037 67944199 -174720154 - L1P LINE L1 -4141 2005 1844 12727 95 2 4 chr1 67944204 67946059 -174718294 + L1P LINE L1 7 1858 -4288 7264 47 5 3 chr1 67946065 67947423 -174716930 - L1PA5 LINE L1 -2 6152 4794 608 230 14 7 chr1 67947616 67947764 -174716589 + MER89-int LTR ERV1 1192 1340 -5461 3291 232 29 9 chr1 67948213 67949029 -174715324 + MER89-int LTR ERV1 1677 2509 -4292 192 40 0 0 chr1 67949071 67949096 -174715257 + (GA)n Simple_repeat Simple_repeat 2 26 0 708 270 108 0 chr1 67949407 67949611 -174714742 + MER89-int LTR ERV1 2547 2772 -4029 234 0 0 0 chr1 67949611 67949637 -174714716 + (TA)n Simple_repeat Simple_repeat 2 27 0 4970 56 5 6 chr1 67949639 67950283 -174714070 - L1PA5 LINE L1 0 6154 5512 22 0 0 0 chr1 68002714 68002736 -174661617 + AT_rich Low_complexity Low_complexity 1 22 0 213 233 0 0 chr1 68002998 68003041 -174661312 + (TATG)n Simple_repeat Simple_repeat 4 46 0 2095 129 3 6 chr1 68003901 68004212 -174660141 + AluSq SINE Alu 1 310 -3 1023 174 50 64 chr1 68004878 68005097 -174659256 + AluJb SINE Alu 85 300 -12 2079 136 3 3 chr1 68005561 68005871 -174658482 - AluSx SINE Alu -2 310 1 188 264 208 14 chr1 68008332 68008404 -174655949 - L2 LINE L2 -19 3253 3168 2304 109 0 3 chr1 68008491 68008804 -174655549 + AluSx SINE Alu 1 312 0 590 307 88 12 chr1 68008937 68009188 -174655165 - L2 LINE L2 -1 3312 3043 450 0 0 0 chr1 68009249 68009299 -174655054 + (TG)n Simple_repeat Simple_repeat 2 51 0 245 244 22 67 chr1 68009372 68009462 -174654891 - MIR SINE MIR -158 104 19 215 240 0 0 chr1 68011016 68011066 -174653287 - MIR3 SINE MIR -3 205 156 1048 95 12 12 chr1 68011785 68011954 -174652399 - L1PA10 LINE L1 -1 6167 5999 22 0 0 0 chr1 68014092 68014114 -174650239 + AT_rich Low_complexity Low_complexity 1 22 0 231 250 174 11 chr1 68014864 68014956 -174649397 - L3 LINE CR1 -35 1542 1436 328 335 80 16 chr1 68014993 68015181 -174649172 - MIR SINE MIR -16 246 47 455 303 32 22 chr1 68015206 68015391 -174648962 - L3 LINE CR1 -123 1454 1268 465 34 0 0 chr1 68015462 68015521 -174648832 + (CA)n Simple_repeat Simple_repeat 2 60 0 218 206 130 65 chr1 68015621 68015713 -174648640 - L3 LINE CR1 -850 727 630 587 112 0 11 chr1 68015818 68015907 -174648446 - AluSx SINE Alu -8 304 217 1126 129 21 47 chr1 68016008 68016201 -174648152 - AluSx SINE Alu -99 213 26 800 93 0 9 chr1 68016205 68016312 -174648041 + AluSg/x SINE Alu 189 294 -15 2098 121 0 17 chr1 68016313 68016611 -174647742 + AluY SINE Alu 2 294 -17 197 372 111 11 chr1 68016631 68016811 -174647542 - L3 LINE CR1 -977 600 403 288 275 99 11 chr1 68017077 68017168 -174647185 + L2 LINE L2 3137 3235 -37 782 148 14 63 chr1 68017242 68017384 -174646969 - AluJo SINE Alu -176 136 2 1439 135 100 27 chr1 68017482 68017741 -174646612 + AluJb SINE Alu 17 294 -18 237 269 144 29 chr1 68017906 68018010 -174646343 - MIR3 SINE MIR -15 193 78 2735 42 0 0 chr1 68018052 68018360 -174645993 - AluY SINE Alu -3 308 1 2355 97 3 3 chr1 68018578 68018887 -174645466 - AluSx SINE Alu -3 309 1 24 0 0 0 chr1 68022445 68022469 -174641884 + AT_rich Low_complexity Low_complexity 1 24 0 539 242 42 8 chr1 68022572 68022692 -174641661 + L2 LINE L2 3189 3312 -1 250 338 0 13 chr1 68022704 68022781 -174641572 + MIR3 SINE MIR 2 77 -131 995 119 0 0 chr1 68022850 68022984 -174641369 + FAM SINE Alu 29 162 -23 1834 86 127 11 chr1 68022995 68023262 -174641091 + AluSg SINE Alu 1 298 -12 390 21 0 0 chr1 68023370 68023417 -174640936 + (TG)n Simple_repeat Simple_repeat 2 48 0 769 181 0 36 chr1 68023837 68023975 -174640378 + FLAM_C SINE Alu 1 133 0 218 372 14 48 chr1 68024347 68024492 -174639861 - MIR3 SINE MIR -35 173 34 1658 161 7 7 chr1 68024537 68024810 -174639543 - AluJo SINE Alu -13 299 27 442 265 8 115 chr1 68025866 68026100 -174638253 + MIR SINE MIR 31 243 -19 405 299 164 6 chr1 68026348 68026525 -174637828 - MIR SINE MIR -10 252 48 284 313 43 43 chr1 68026720 68026835 -174637518 - MER5B DNA MER1_type -63 115 1 226 217 0 22 chr1 68027052 68027098 -174637255 + CT-rich Low_complexity Low_complexity 2 46 0 1898 177 3 0 chr1 68027214 68027524 -174636829 - AluJb SINE Alu -1 311 1 1610 160 4 8 chr1 68027679 68027984 -174636369 - AluSx SINE Alu 0 327 24 2027 118 48 0 chr1 68028144 68028433 -174635920 + AluSx SINE Alu 1 303 -9 215 247 96 0 chr1 68028433 68028506 -174635847 + MIR SINE MIR 109 188 -74 183 341 80 11 chr1 68028913 68029001 -174635352 - L3b LINE CR1 -38 1545 1452 216 0 0 0 chr1 68029115 68029139 -174635214 + (A)n Simple_repeat Simple_repeat 1 24 0 419 340 213 14 chr1 68030030 68030448 -174633905 + L3 LINE CR1 826 1326 -251 187 229 0 42 chr1 68032430 68032478 -174631875 + L2 LINE L2 3219 3264 -8 1846 153 3 20 chr1 68032626 68032927 -174631426 - AluJb SINE Alu -16 296 1 374 196 165 21 chr1 68033262 68033359 -174630994 - L2 LINE L2 0 3313 3203 906 202 51 6 chr1 68033381 68033559 -174630794 + MER5A DNA MER1_type 1 186 -3 428 298 13 40 chr1 68033756 68033907 -174630446 + MIR SINE MIR 19 165 -97 181 288 15 30 chr1 68033971 68034037 -174630316 + L2 LINE L2 3205 3269 -3 571 220 0 9 chr1 68034707 68034816 -174629537 - L2 LINE L2 -1 3312 3205 1580 226 143 13 chr1 68035157 68035604 -174628749 - MLT1D LTR MaLR 0 505 1 214 343 14 0 chr1 68035775 68035845 -174628508 + L2 LINE L2 2992 3062 -210 2217 119 0 0 chr1 68036393 68036688 -174627665 - AluSx SINE Alu -17 295 1 25 0 0 0 chr1 68036792 68036817 -174627536 + AT_rich Low_complexity Low_complexity 1 25 0 333 296 91 50 chr1 68037479 68037678 -174626675 + L2 LINE L2 2813 3019 -253 1384 166 27 103 chr1 68038099 68038430 -174625923 - AluJo SINE Alu -6 306 1 21 0 0 0 chr1 68038561 68038582 -174625771 + AT_rich Low_complexity Low_complexity 1 21 0 414 270 26 72 chr1 68038837 68038989 -174625364 + MIR SINE MIR 1 145 -117 186 318 71 26 chr1 68039372 68039526 -174624827 + MIR3 SINE MIR 3 163 -45 1067 137 12 6 chr1 68040444 68040612 -174623741 - AluSg/x SINE Alu -11 299 131 233 328 0 0 chr1 68042288 68042355 -174621998 + MIR SINE MIR 86 152 -56 229 256 0 0 chr1 68042433 68042476 -174621877 + Charlie8 DNA MER1_type 222 264 -2153 1779 114 35 55 chr1 68043368 68043691 -174620662 - AluSx SINE Alu 0 317 1 1752 157 7 14 chr1 68043694 68043988 -174620365 - AluJb SINE Alu -20 292 1 542 254 106 26 chr1 68044178 68044367 -174619986 + MIR SINE MIR 10 213 -49 2881 16 0 0 chr1 68044627 68044939 -174619414 + AluYb8 SINE Alu 1 312 -6 2101 93 21 3 chr1 68045096 68045387 -174618966 + AluSx SINE Alu 1 296 -16 228 220 20 0 chr1 68045420 68045470 -174618883 - L3 LINE CR1 -12 1565 1515 * 315 177 32 0 chr1 68045427 68045489 -174618864 - MIR3 SINE MIR -23 185 122 222 226 38 19 chr1 68048551 68048604 -174615749 + MIR SINE MIR 19 72 -136 449 263 160 0 chr1 68048605 68048761 -174615592 - MER5A DNA MER1_type 0 189 9 * 574 234 23 47 chr1 68048743 68048914 -174615439 + MIR SINE MIR 31 197 -65 2449 80 0 0 chr1 68048922 68049222 -174615131 - AluSx SINE Alu -12 300 1 271 357 43 7 chr1 68049332 68049472 -174614881 + MIR3 SINE MIR 16 160 -48 939 204 6 22 chr1 68049476 68049657 -174614696 + MER5A DNA MER1_type 6 183 -6 2195 122 0 0 chr1 68050159 68050454 -174613899 - AluSx SINE Alu -16 296 2 225 65 0 0 chr1 68050827 68050858 -174613495 + (CA)n Simple_repeat Simple_repeat 2 32 0 319 271 0 0 chr1 68050864 68050934 -174613419 + Tigger5 DNA MER2_type 2254 2323 0 315 232 264 8 chr1 68051456 68051581 -174612772 - MER5A DNA MER1_type -29 160 4 406 311 98 29 chr1 68052516 68052760 -174611593 + MIR SINE MIR 2 262 0 579 266 56 52 chr1 68053027 68053260 -174611093 - MER102a DNA MER1_type -16 314 81 431 313 82 6 chr1 68053268 68053450 -174610903 - MLT1L LTR MaLR -10 605 410 232 273 26 13 chr1 68053543 68053620 -174610733 - MLT1L LTR MaLR -329 286 209 2432 84 0 3 chr1 68053680 68053990 -174610363 - AluY SINE Alu -2 309 1 264 346 62 19 chr1 68055499 68055661 -174608692 - MIR SINE MIR -74 188 20 2332 88 0 0 chr1 68056090 68056384 -174607969 + AluY SINE Alu 1 294 -17 237 298 18 0 chr1 68058852 68058909 -174605444 - L2 LINE L2 -10 3262 3205 441 258 41 81 chr1 68062158 68062379 -174601974 - MIR SINE MIR -40 222 11 242 269 74 50 chr1 68062504 68062604 -174601749 + MIR SINE MIR 16 126 -94 2088 132 13 7 chr1 68062607 68062917 -174601436 - AluSx SINE Alu 0 312 1 348 317 132 0 chr1 68063027 68063194 -174601159 + MIR SINE MIR 64 252 -10 217 0 0 0 chr1 68064356 68064380 -174599973 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1894 168 0 0 chr1 68064380 68064666 -174599687 - AluSx SINE Alu -1 309 1 250 354 170 14 chr1 68065091 68065379 -174598974 - L2 LINE L2 -90 3182 2850 21 36 0 0 chr1 68065779 68065807 -174598546 + AT_rich Low_complexity Low_complexity 1 28 0 366 247 71 41 chr1 68065807 68065977 -174598376 - L1ME4a LINE L1 -2 6119 5945 2433 63 0 7 chr1 68066047 68066346 -174598007 + AluY SINE Alu 1 297 -14 225 262 165 19 chr1 68066701 68066804 -174597549 - MIR SINE MIR -58 204 87 297 0 0 0 chr1 68066878 68066911 -174597442 + (TG)n Simple_repeat Simple_repeat 2 34 0 332 285 164 29 chr1 68067606 68067813 -174596540 - MIR SINE MIR -1 261 27 767 223 229 25 chr1 68067998 68068321 -174596032 - LTR16C LTR ERVL -7 484 96 392 281 81 8 chr1 68068554 68068696 -174595657 + MIR3 SINE MIR 14 171 -65 23 54 0 0 chr1 68071281 68071318 -174593035 + AT_rich Low_complexity Low_complexity 1 37 0 254 98 0 49 chr1 68073339 68073400 -174590953 + (A)n Simple_repeat Simple_repeat 1 58 0 246 257 98 0 chr1 68074387 68074484 -174589869 + MIR SINE MIR 54 160 -48 793 295 159 66 chr1 68074605 68075198 -174589155 + L2 LINE L2 2578 3227 -86 529 261 79 44 chr1 68075389 68075592 -174588761 + MIR SINE MIR 2 211 -51 774 220 53 16 chr1 68075967 68076193 -174588160 - MIR SINE MIR -26 236 2 619 223 0 40 chr1 68076266 68076414 -174587939 + MIR SINE MIR 111 252 -10 1493 110 9 0 chr1 68077267 68077486 -174586867 - AluSg/x SINE Alu -8 302 82 307 277 36 0 chr1 68077751 68077834 -174586519 + MIR SINE MIR 48 133 -129 269 295 101 39 chr1 68078106 68078235 -174586118 + MIR SINE MIR 88 224 -38 2296 77 3 7 chr1 68078608 68078907 -174585446 + AluSc SINE Alu 1 298 -11 352 201 47 67 chr1 68079281 68079430 -174584923 - MIR SINE MIR -10 252 107 1952 110 3 80 chr1 68081180 68081506 -174582847 - AluY SINE Alu -10 301 1 2157 110 0 13 chr1 68081643 68081951 -174582402 + AluSg SINE Alu 2 305 -5 282 257 199 58 chr1 68083584 68083755 -174580598 + MIR SINE MIR 32 226 -36 209 224 41 0 chr1 68084027 68084076 -174580277 - MIR SINE MIR -56 206 156 332 93 0 19 chr1 68086381 68086435 -174577918 + (TG)n Simple_repeat Simple_repeat 1 53 0 1295 103 5 0 chr1 68086702 68086887 -174577466 - AluSg/x SINE Alu -5 307 122 2194 106 16 3 chr1 68087136 68087439 -174576914 + AluSq SINE Alu 6 312 -1 482 335 40 31 chr1 68088762 68088989 -174575364 - MIR SINE MIR -2 260 32 2088 125 0 0 chr1 68089143 68089430 -174574923 + AluSx SINE Alu 1 287 -25 621 40 0 0 chr1 68089430 68089506 -174574847 + (TA)n Simple_repeat Simple_repeat 2 77 0 647 262 178 9 chr1 68089596 68089810 -174574543 + MIR SINE MIR 8 257 -5 200 292 0 0 chr1 68090944 68090992 -174573361 + GA-rich Low_complexity Low_complexity 70 117 0 22 35 0 0 chr1 68092145 68092174 -174572179 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr1 68093903 68093939 -174570414 + AT_rich Low_complexity Low_complexity 1 36 0 633 257 12 41 chr1 68094518 68094689 -174569664 - MIR SINE MIR -90 172 7 976 47 79 0 chr1 68094957 68095084 -174569269 + MER85 DNA T2_type 1 137 -2 1094 114 6 24 chr1 68095333 68095500 -174568853 - AluJb SINE Alu -1 311 148 248 347 40 13 chr1 68096348 68096498 -174567855 + L3 LINE CR1 1257 1410 -167 207 0 0 0 chr1 68097406 68097429 -174566924 + (T)n Simple_repeat Simple_repeat 1 23 0 530 234 156 12 chr1 68097937 68098104 -174566249 + MIR SINE MIR 2 192 -70 337 219 110 75 chr1 68098940 68098966 -174565387 - L1ME4a LINE L1 -4 6117 6093 1974 123 17 33 chr1 68098966 68099099 -174565254 + AluSx SINE Alu 1 135 -177 252 0 0 0 chr1 68099099 68099127 -174565226 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1974 123 17 33 chr1 68099127 68099295 -174565058 + AluSx SINE Alu 135 297 -15 337 219 110 75 chr1 68099295 68099414 -174564939 - L1ME4a LINE L1 -28 6093 5967 428 260 39 26 chr1 68100889 68101043 -174563310 - MIR SINE MIR -48 214 59 1692 164 7 0 chr1 68101115 68101395 -174562958 - AluJb SINE Alu -4 308 27 239 342 25 32 chr1 68103982 68104140 -174560213 - MIR SINE MIR -105 157 1 2141 122 0 0 chr1 68106138 68106424 -174557929 + AluSx SINE Alu 1 286 -26 2222 112 0 40 chr1 68106457 68106780 -174557573 - AluSg SINE Alu 0 310 1 617 328 39 9 chr1 68107198 68107427 -174556926 + MIR SINE MIR 21 256 -6 405 203 0 13 chr1 68107788 68107867 -174556486 + MER2 DNA MER2_type 2 79 -266 374 219 0 0 chr1 68107869 68107933 -174556420 - MER2 DNA MER2_type 0 345 282 310 289 58 0 chr1 68108139 68108243 -174556110 - L1ME4a LINE L1 -2003 5805 5696 2144 122 3 0 chr1 68108362 68108657 -174555696 + AluSq SINE Alu 1 296 -17 2525 60 0 0 chr1 68108845 68109146 -174555207 + AluY SINE Alu 1 301 -10 1759 91 4 0 chr1 68109146 68109405 -174554948 + AluSc SINE Alu 50 310 0 25 31 0 0 chr1 68110879 68110911 -174553442 + AT_rich Low_complexity Low_complexity 1 32 0 27 81 0 0 chr1 68112946 68113008 -174551345 + AT_rich Low_complexity Low_complexity 1 62 0 24 32 0 0 chr1 68113291 68113322 -174551031 + AT_rich Low_complexity Low_complexity 1 31 0 41 36 0 0 chr1 68113541 68113596 -174550757 + AT_rich Low_complexity Low_complexity 1 55 0 294 196 262 19 chr1 68113764 68113871 -174550482 - MER103 DNA DNA -31 135 3 22 70 0 0 chr1 68114533 68114576 -174549777 + AT_rich Low_complexity Low_complexity 1 43 0 2380 79 0 0 chr1 68114670 68114961 -174549392 - AluSc SINE Alu -18 291 1 207 0 0 0 chr1 68116061 68116084 -174548269 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr1 68116109 68116133 -174548220 + AT_rich Low_complexity Low_complexity 1 24 0 723 312 49 18 chr1 68119194 68119700 -174544653 + L1M4 LINE L1 3914 4435 -1711 875 217 6 17 chr1 68121096 68121271 -174543082 + FAM SINE Alu 1 173 -2 303 317 71 0 chr1 68121327 68121444 -174542909 - MIR SINE MIR -66 142 43 266 310 139 19 chr1 68122636 68122794 -174541559 - MER5A DNA MER1_type -6 183 7 599 259 49 0 chr1 68123031 68123193 -174541160 + MIR SINE MIR 80 249 -13 2444 69 3 0 chr1 68123498 68123801 -174540552 + AluSp SINE Alu 1 304 -9 2311 60 0 3 chr1 68124592 68124945 -174539408 + AluY SINE Alu 1 352 0 2067 155 10 0 chr1 68124945 68125254 -174539099 + AluJb SINE Alu 1 312 0 444 222 15 74 chr1 68126417 68126552 -174537801 + L2 LINE L2 3187 3313 0 459 69 0 0 chr1 68126696 68126768 -174537585 - L1PB1 LINE L1 -1 6150 6079 298 279 42 79 chr1 68127143 68127333 -174537020 + MIR SINE MIR 80 262 0 23 68 0 0 chr1 68128433 68128477 -174535876 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr1 68134896 68134931 -174529422 + AT_rich Low_complexity Low_complexity 1 35 0 385 280 0 28 chr1 68135908 68136015 -174528338 + MIR3 SINE MIR 82 185 -23 188 394 91 12 chr1 68137485 68137650 -174526703 - L2 LINE L2 -8 3264 3087 395 153 0 0 chr1 68138898 68138957 -174525396 + AluS SINE Alu 1 59 -249 1787 122 0 42 chr1 68138957 68139243 -174525110 + AluSx SINE Alu 28 301 -11 21 0 0 0 chr1 68140146 68140167 -174524186 + AT_rich Low_complexity Low_complexity 1 21 0 201 311 163 22 chr1 68140755 68140890 -174523463 + MIR SINE MIR 109 262 0 1595 80 21 55 chr1 68145420 68145557 -174518796 + MER30 DNA MER1_type 1 128 -102 2284 93 0 26 chr1 68145557 68145869 -174518484 + AluSx SINE Alu 1 304 -8 1595 80 21 55 chr1 68145869 68145969 -174518384 + MER30 DNA MER1_type 128 230 0 198 0 0 0 chr1 68146425 68146447 -174517906 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2303 101 0 13 chr1 68146739 68147045 -174517308 - AluSg SINE Alu -8 302 1 915 198 102 92 chr1 68147108 68147391 -174516962 - AluJo SINE Alu -5 307 22 1986 144 27 0 chr1 68148138 68148430 -174515923 - AluJo SINE Alu -12 300 1 444 250 9 37 chr1 68149829 68149937 -174514416 + L2 LINE L2 3196 3300 -13 2427 55 0 0 chr1 68149999 68150289 -174514064 - AluY SINE Alu -21 290 1 1927 140 95 6 chr1 68150685 68151021 -174513332 + MER47A DNA MER2_type 1 366 0 2020 128 17 0 chr1 68153122 68153411 -174510942 + AluSx SINE Alu 1 294 -18 2083 129 0 22 chr1 68153773 68154090 -174510263 + AluSq SINE Alu 3 312 -1 270 264 139 42 chr1 68155477 68155621 -174508732 - MIR3 SINE MIR -17 191 34 2249 88 0 61 chr1 68155779 68156109 -174508244 - AluSx SINE Alu -2 310 1 221 246 159 0 chr1 68156148 68156217 -174508136 - L2 LINE L2 -9 3263 3184 326 308 0 20 chr1 68156371 68156501 -174507852 - MIR SINE MIR -75 133 5 23 0 0 0 chr1 68156607 68156630 -174507723 + AT_rich Low_complexity Low_complexity 1 23 0 2266 95 3 3 chr1 68156636 68156932 -174507421 + AluSx SINE Alu 1 296 -16 262 250 130 10 chr1 68157244 68157344 -174507009 + L2 LINE L2 3201 3312 -1 325 304 0 48 chr1 68159628 68159753 -174504600 - MIR SINE MIR -56 206 88 183 294 92 28 chr1 68163012 68163121 -174501232 - L2 LINE L2 -5 3308 3193 27 49 0 0 chr1 68165285 68165326 -174499027 + AT_rich Low_complexity Low_complexity 1 41 0 244 221 35 23 chr1 68166106 68166192 -174498161 + (TTTAA)n Simple_repeat Simple_repeat 4 90 0 26 50 0 0 chr1 68166206 68166246 -174498107 + AT_rich Low_complexity Low_complexity 1 40 0 1967 111 0 15 chr1 68167917 68168188 -174496165 + AluSg SINE Alu 1 267 -43 581 307 60 19 chr1 68168216 68168431 -174495922 + MIR SINE MIR 35 258 -4 264 149 0 0 chr1 68169844 68169891 -174494462 + (TATG)n Simple_repeat Simple_repeat 1 47 0 404 267 122 32 chr1 68170238 68170373 -174493980 + MIR SINE MIR 4 168 -94 2096 128 20 0 chr1 68170373 68170679 -174493674 + AluSx SINE Alu 1 312 0 404 267 122 32 chr1 68170679 68170764 -174493589 + MIR SINE MIR 168 244 -18 201 323 0 0 chr1 68171246 68171308 -174493045 + L2 LINE L2 3250 3311 -2 2303 108 0 34 chr1 68172824 68173147 -174491206 + AluSx SINE Alu 1 312 0 2351 80 0 3 chr1 68175917 68176216 -174488137 + AluY SINE Alu 1 298 -13 1150 309 95 18 chr1 68176338 68176833 -174487520 - L2 LINE L2 -1 3312 2775 269 323 0 40 chr1 68176883 68176982 -174487371 - L2 LINE L2 0 3313 3219 739 100 0 0 chr1 68177304 68177404 -174486949 + AluJb SINE Alu 11 110 -202 361 100 0 0 chr1 68177438 68177498 -174486855 - MER53 DNA DNA -12 177 118 263 195 182 0 chr1 68177496 68177573 -174486780 + MER53 DNA DNA 98 188 -1 * 1368 288 64 9 chr1 68178375 68178559 -174485794 - LTR16B LTR ERVL 0 464 292 1716 161 0 14 chr1 68178559 68178839 -174485514 - AluJb SINE Alu -34 278 3 1368 288 64 9 chr1 68178839 68179092 -174485261 - LTR16B LTR ERVL -172 292 3 196 250 50 0 chr1 68180934 68180994 -174483359 - MIR SINE MIR -74 134 72 380 233 171 49 chr1 68181343 68181588 -174482765 - Charlie7 DNA MER1_type -2283 329 55 186 103 0 0 chr1 68181692 68181721 -174482632 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr1 68181812 68181833 -174482520 + AT_rich Low_complexity Low_complexity 1 21 0 185 424 40 0 chr1 68181835 68181934 -174482419 - L2 LINE L2 -49 3223 3121 207 346 13 13 chr1 68182716 68182794 -174481559 - L2 LINE L2 -290 2982 2905 305 258 31 52 chr1 68183603 68183700 -174480653 - L2 LINE L2 0 3313 3219 183 327 97 35 chr1 68183684 68183797 -174480556 - MIR3 SINE MIR -85 123 4 * 422 277 71 9 chr1 68183992 68184104 -174480249 + L2 LINE L2 3151 3269 -3 197 322 17 0 chr1 68186812 68186871 -174477482 - L2 LINE L2 -15 3298 3239 1670 116 45 113 chr1 68187238 68187636 -174476717 + THE1C LTR MaLR 1 371 -4 669 309 33 12 chr1 68187750 68187993 -174476360 + MIR SINE MIR 2 249 -13 280 196 0 43 chr1 68189842 68189934 -174474419 + (TA)n Simple_repeat Simple_repeat 1 88 0 223 288 0 0 chr1 68189958 68190017 -174474336 + (TA)n Simple_repeat Simple_repeat 1 59 0 372 229 12 0 chr1 68192331 68192414 -174471939 - MIR SINE MIR -113 149 66 860 259 48 65 chr1 68192436 68192834 -174471519 - L2 LINE L2 -7 3306 2916 795 199 139 0 chr1 68192851 68193017 -174471336 - MER5A DNA MER1_type 0 189 1 430 302 162 0 chr1 68193017 68193196 -174471157 - L2 LINE L2 -518 2796 2589 2184 112 0 3 chr1 68193199 68193493 -174470860 + AluSx SINE Alu 1 293 -19 279 225 250 0 chr1 68194057 68194137 -174470216 + MIR SINE MIR 70 169 -93 2395 86 0 16 chr1 68195040 68195355 -174468998 - AluY SINE Alu -1 310 1 1936 129 7 0 chr1 68195467 68195746 -174468607 - AluSx SINE Alu 0 312 32 1765 177 40 6 chr1 68196348 68196699 -174467654 + MLT1A1 LTR MaLR 1 363 -2 390 309 237 0 chr1 68197808 68198002 -174466351 + MIR SINE MIR 20 259 -3 2232 109 0 0 chr1 68198811 68199105 -174465248 + AluSg SINE Alu 1 294 -16 340 215 19 19 chr1 68199893 68200000 -174464353 + CT-rich Low_complexity Low_complexity 4 110 0 249 163 138 12 chr1 68200136 68200216 -174464137 + L2 LINE L2 3197 3286 -27 2440 84 3 0 chr1 68200312 68200622 -174463731 + AluSp SINE Alu 1 311 -2 944 106 42 106 chr1 68200653 68200870 -174463483 - MER20 DNA MER1_type 0 219 17 1750 124 50 60 chr1 68201717 68202016 -174462337 - AluJb SINE Alu -16 296 1 2374 164 21 7 chr1 68202409 68202829 -174461524 - MSTA LTR MaLR -2 426 1 587 258 158 32 chr1 68203070 68203260 -174461093 + MIR SINE MIR 43 256 -6 405 314 107 69 chr1 68203312 68203602 -174460751 + L2 LINE L2 2968 3268 -4 251 188 51 0 chr1 68203606 68203665 -174460688 - MIR SINE MIR -94 114 45 189 114 29 0 chr1 68204162 68204197 -174460156 + L2 LINE L2 3278 3313 0 190 254 0 36 chr1 68205495 68205550 -174458803 - L2 LINE L2 -92 3221 3169 424 246 63 14 chr1 68205633 68205775 -174458578 + MER20B DNA MER1_type 14 162 -621 28 91 0 0 chr1 68206223 68206300 -174458053 + AT_rich Low_complexity Low_complexity 1 77 0 186 309 36 0 chr1 68206543 68206598 -174457755 + L2 LINE L2 3242 3298 -15 503 297 7 0 chr1 68207014 68207162 -174457191 - MIR SINE MIR -1 261 113 198 300 0 0 chr1 68208608 68208658 -174455695 - L2 LINE L2 -5 3267 3218 324 0 0 0 chr1 68208994 68209030 -174455323 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr1 68210299 68210323 -174454030 + AT_rich Low_complexity Low_complexity 1 24 0 181 79 0 53 chr1 68210598 68210636 -174453717 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 376 282 92 26 chr1 68210636 68210831 -174453522 + L3 LINE CR1 1180 1387 -190 224 208 0 38 chr1 68210890 68210943 -174453410 + MIR3 SINE MIR 154 204 -4 340 191 65 0 chr1 68211255 68211331 -174453022 + MIR SINE MIR 45 114 -94 326 247 20 70 chr1 68211460 68211653 -174452700 - MLT1J LTR MaLR -7 441 286 357 307 31 16 chr1 68211980 68212107 -174452246 + L2 LINE L2 3180 3308 -5 233 242 167 0 chr1 68262900 68262966 -174401387 - U2 snRNA snRNA -111 77 1 770 275 28 5 chr1 68263312 68263523 -174400830 + MIR SINE MIR 45 260 -2 505 272 9 0 chr1 68265064 68265178 -174399175 + L2 LINE L2 3191 3305 -8 293 312 182 0 chr1 68265911 68265991 -174398362 + MIR SINE MIR 68 132 -130 2283 175 0 0 chr1 68265991 68266328 -174398025 + MER1B DNA MER1_type 1 337 0 293 312 182 0 chr1 68266328 68266401 -174397952 + MIR SINE MIR 132 249 -13 247 224 129 24 chr1 68266471 68266556 -174397797 - MIR SINE MIR -85 123 30 184 309 0 59 chr1 68266857 68266925 -174397428 + MIR SINE MIR 83 146 -62 2319 110 73 14 chr1 68267227 68267581 -174396772 - THE1C LTR MaLR 0 375 1 2626 59 0 0 chr1 68267654 68267961 -174396392 - AluY SINE Alu -4 307 1 299 361 22 55 chr1 68267969 68268152 -174396201 + L2 LINE L2 2919 3095 -177 294 385 7 21 chr1 68268316 68268459 -174395894 + MIR SINE MIR 2 142 -120 1749 149 0 90 chr1 68270044 68270387 -174393966 - AluJo SINE Alu 0 312 1 221 357 14 0 chr1 68270666 68270736 -174393617 - L2 LINE L2 -3 3269 3199 1493 196 0 39 chr1 68270837 68271148 -174393205 + AluJo SINE Alu 3 301 -11 184 272 82 89 chr1 68271250 68271408 -174392945 + L2 LINE L2 2927 3083 -189 1092 167 4 4 chr1 68271433 68271691 -174392662 + MER47A DNA MER2_type 1 357 -9 303 314 67 19 chr1 68271754 68271859 -174392494 + L2 LINE L2 3163 3272 0 815 234 6 0 chr1 68272208 68272383 -174391970 - MER58A DNA MER1_type 0 224 49 321 26 0 0 chr1 68273245 68273283 -174391070 + (CA)n Simple_repeat Simple_repeat 2 39 0 188 354 42 52 chr1 68273324 68273516 -174390837 - L2 LINE L2 -217 3055 2866 484 332 39 21 chr1 68274912 68275152 -174389201 - MIR SINE MIR -8 254 13 1582 172 20 43 chr1 68276074 68276376 -174387977 - AluJo SINE Alu -17 295 1 227 306 153 0 chr1 68276652 68276750 -174387603 - L2 LINE L2 -8 3264 3152 273 343 137 55 chr1 68277368 68277660 -174386693 + L2 LINE L2 2599 2914 -400 347 314 114 32 chr1 68277989 68278269 -174386084 + L2 LINE L2 2965 3267 -5 275 274 60 12 chr1 68278699 68278783 -174385570 + L2 LINE L2 3221 3308 -5 2278 112 3 6 chr1 68278864 68279176 -174385177 - AluSx SINE Alu -1 311 1 202 70 0 47 chr1 68280045 68280088 -174384265 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1421 98 10 10 chr1 68280088 68280286 -174384067 - AluSg/x SINE Alu -32 280 83 772 74 0 0 chr1 68280286 68280381 -174383972 - AluSg SINE Alu -177 133 39 445 340 32 0 chr1 68280805 68280961 -174383392 + MIR SINE MIR 9 169 -93 398 208 47 67 chr1 68281151 68281300 -174383053 + L1MD2 LINE L1 5996 6141 -25 462 359 6 25 chr1 68281412 68281571 -174382782 - L2 LINE L2 0 3272 3117 396 0 0 0 chr1 68282271 68282315 -174382038 + (TG)n Simple_repeat Simple_repeat 2 45 0 370 259 35 91 chr1 68283577 68283734 -174380619 - MIR SINE MIR -73 135 9 2367 78 10 0 chr1 68283811 68284105 -174380248 + AluSp SINE Alu 1 297 -16 755 260 103 21 chr1 68284311 68284437 -174379916 + L2 LINE L2 3009 3123 -190 2231 107 3 3 chr1 68284437 68284735 -174379618 - AluSx SINE Alu -14 298 1 755 260 103 21 chr1 68284735 68284889 -174379464 + L2 LINE L2 3123 3312 -1 370 296 112 12 chr1 68285350 68285432 -174378921 + MER5A DNA MER1_type 4 76 -113 1628 167 11 19 chr1 68285432 68285702 -174378651 + AluJo SINE Alu 42 309 -3 370 296 112 12 chr1 68285702 68285788 -174378565 + MER5A DNA MER1_type 76 189 0 216 406 10 10 chr1 68285856 68285952 -174378401 - L3b LINE CR1 -32 1551 1456 22 35 0 0 chr1 68287030 68287059 -174377294 + AT_rich Low_complexity Low_complexity 1 29 0 2149 115 0 3 chr1 68287129 68287424 -174376929 + AluSq SINE Alu 1 294 -19 264 250 40 26 chr1 68288345 68288421 -174375932 + L2 LINE L2 3237 3313 0 251 280 70 63 chr1 68288923 68289103 -174375250 + MIR SINE MIR 20 198 -64 275 287 39 62 chr1 68289294 68289423 -174374930 - L2 LINE L2 -4 3268 3143 22 0 0 0 chr1 68289984 68290006 -174374347 + AT_rich Low_complexity Low_complexity 1 22 0 318 176 0 0 chr1 68290208 68290259 -174374094 - MIR SINE MIR -3 259 209 220 244 0 0 chr1 68290259 68290304 -174374049 + (TA)n Simple_repeat Simple_repeat 2 46 0 1149 171 19 0 chr1 68294398 68294603 -174369750 + MER3 DNA MER1_type 1 209 0 278 296 99 0 chr1 68296058 68296139 -174368214 + MIR SINE MIR 3 91 -171 * 1096 293 58 29 chr1 68296112 68296593 -174367760 + L2 LINE L2 1544 2038 -1276 343 308 65 77 chr1 68297249 68297427 -174366926 + MIR SINE MIR 19 195 -67 2248 110 0 19 chr1 68297427 68297737 -174366616 + AluSx SINE Alu 5 308 -4 343 308 65 77 chr1 68297737 68297805 -174366548 + MIR SINE MIR 195 262 0 1900 184 67 123 chr1 68299042 68299727 -174364626 - MLT1E1 LTR MaLR -7 647 1 1589 164 33 72 chr1 68299728 68299885 -174364468 - AluJo SINE Alu -20 292 151 2342 113 0 0 chr1 68299885 68300194 -174364159 - AluSc SINE Alu 0 309 1 1589 164 33 72 chr1 68300194 68300340 -174364013 - AluJo SINE Alu -161 151 1 184 283 0 0 chr1 68302244 68302290 -174362063 - L2 LINE L2 -65 3248 3203 476 257 201 3 chr1 68302885 68303204 -174361149 - L1ME4a LINE L1 -14 6107 5726 211 274 0 0 chr1 68304149 68304211 -174360142 + (TG)n Simple_repeat Simple_repeat 1 62 0 209 152 130 0 chr1 68305308 68305354 -174358999 - L2 LINE L2 0 3272 3221 2180 104 0 17 chr1 68305438 68305735 -174358618 + AluSx SINE Alu 1 292 -20 2173 159 6 3 chr1 68307265 68307629 -174356724 - MLT1A1 LTR MaLR 0 365 1 371 283 118 47 chr1 68307629 68307841 -174356512 + MIR SINE MIR 14 240 -22 222 37 0 0 chr1 68307953 68307980 -174356373 + (T)n Simple_repeat Simple_repeat 1 27 0 189 102 102 102 chr1 68308195 68308244 -174356109 + L2 LINE L2 3264 3312 -1 306 288 53 23 chr1 68308522 68308654 -174355699 + MIR SINE MIR 56 191 -71 400 315 97 44 chr1 68309217 68309321 -174355032 - MLT1J LTR MaLR -1 510 413 1652 183 34 3 chr1 68309321 68309616 -174354737 + AluJo SINE Alu 1 304 -8 400 315 97 44 chr1 68309616 68309984 -174354369 - MLT1J LTR MaLR -98 413 13 252 339 102 0 chr1 68310429 68310556 -174353797 - L2 LINE L2 -9 3304 3165 363 311 50 0 chr1 68311246 68311365 -174352988 + L2 LINE L2 3189 3313 0 1782 129 4 15 chr1 68311521 68311827 -174352526 - AluJo SINE Alu 0 326 24 477 0 0 0 chr1 68311924 68311977 -174352376 + (CA)n Simple_repeat Simple_repeat 2 54 0 600 101 0 0 chr1 68313727 68313816 -174350537 + (TC)n Simple_repeat Simple_repeat 1 89 0 877 325 12 45 chr1 68313838 68314259 -174350094 - MLT1K LTR MaLR -181 407 1 303 242 32 0 chr1 68314522 68314584 -174349769 + L2 LINE L2 3248 3311 -2 2145 114 0 4 chr1 68314681 68314961 -174349392 - AluSg SINE Alu -31 279 1 210 278 10 72 chr1 68314990 68315087 -174349266 - MIR SINE MIR -123 139 49 1820 185 7 0 chr1 68315315 68315617 -174348736 + AluJb SINE Alu 1 304 -8 21 36 0 0 chr1 68316433 68316461 -174347892 + AT_rich Low_complexity Low_complexity 1 28 0 314 294 112 28 chr1 68316526 68316669 -174347684 - MIR3 SINE MIR -25 183 29 1819 181 3 7 chr1 68316725 68317035 -174347318 - AluJo SINE Alu -3 309 1 2064 135 0 7 chr1 68317206 68317502 -174346851 + AluSx SINE Alu 1 294 -18 750 266 87 18 chr1 68318059 68318288 -174346065 - MIR SINE MIR -16 246 2 1164 202 14 9 chr1 68318552 68318775 -174345578 + MER58A DNA MER1_type 1 224 0 2401 93 0 3 chr1 68322516 68322826 -174341527 - AluY SINE Alu -2 309 1 238 111 286 48 chr1 68322952 68323015 -174341338 - L2 LINE L2 0 3313 3236 213 284 0 34 chr1 68323027 68323115 -174341238 - L2 LINE L2 -900 2414 2330 310 252 234 0 chr1 68329220 68329327 -174335026 + MIR SINE MIR 50 181 -81 23 0 0 0 chr1 68330051 68330074 -174334279 + AT_rich Low_complexity Low_complexity 1 23 0 207 347 92 72 chr1 68330480 68330731 -174333622 - L2 LINE L2 0 3272 3017 2040 132 0 35 chr1 68331109 68331428 -174332925 + AluJb SINE Alu 1 308 -4 832 287 162 40 chr1 68332009 68332618 -174331735 - L2 LINE L2 -1 3312 2622 615 256 31 54 chr1 68332620 68332843 -174331510 - L2 LINE L2 -4 3309 3092 * 1175 238 49 25 chr1 68332819 68333143 -174331210 - L2 LINE L2 -668 2646 2315 308 263 268 19 chr1 68333796 68334005 -174330348 - MIR SINE MIR -1 261 1 2376 100 0 3 chr1 68334104 68334414 -174329939 - AluSg SINE Alu -1 309 1 1999 153 0 0 chr1 68334455 68334771 -174329582 - AluSx SINE Alu 0 316 1 474 294 75 7 chr1 68334791 68334937 -174329416 - MIR SINE MIR -58 204 49 347 219 104 0 chr1 68335326 68335422 -174328931 - L1ME1 LINE L1 -20 6146 6041 439 287 142 14 chr1 68335940 68336222 -174328131 + L1MC4a LINE L1 5263 5580 -2228 348 294 174 23 chr1 68336348 68336566 -174327787 + L1MC4a LINE L1 5665 5915 -1893 225 0 0 0 chr1 68337754 68337779 -174326574 + (TG)n Simple_repeat Simple_repeat 2 26 0 529 280 42 0 chr1 68337957 68338125 -174326228 - L1ME LINE L1 -423 5698 5524 278 280 68 42 chr1 68338456 68338574 -174325779 - MIR SINE MIR -141 121 1 1875 139 17 0 chr1 68338670 68338964 -174325389 + AluJo SINE Alu 1 299 -13 420 219 253 18 chr1 68338964 68339292 -174325061 - L1ME4a LINE L1 -86 6035 5631 1413 188 59 42 chr1 68339649 68339936 -174324417 + AluJo SINE Alu 1 292 -20 233 322 74 33 chr1 68341715 68341836 -174322517 + L2 LINE L2 3179 3304 -9 23 0 0 0 chr1 68342427 68342450 -174321903 + AT_rich Low_complexity Low_complexity 1 23 0 1912 171 0 3 chr1 68342468 68342766 -174321587 + AluJo SINE Alu 1 297 -15 754 72 0 36 chr1 68343141 68343252 -174321101 + FLAM_C SINE Alu 29 135 -8 198 118 0 0 chr1 68344466 68344500 -174319853 + (TA)n Simple_repeat Simple_repeat 1 34 0 241 308 75 41 chr1 68349539 68349685 -174314668 + L3 LINE CR1 1249 1399 -178 504 312 64 41 chr1 68349703 68349921 -174314432 - MIR SINE MIR -34 228 6 319 295 21 0 chr1 68349925 68350020 -174314333 + L3 LINE CR1 1416 1512 -65 3219 142 4 4 chr1 68350055 68350590 -174313763 + L1MB3 LINE L1 5642 6176 -7 413 216 248 14 chr1 68350803 68351025 -174313328 - L1ME4a LINE L1 -3 6118 5845 237 135 58 0 chr1 68353061 68353113 -174311240 - LTR66 LTR ERVL -162 448 394 309 155 0 0 chr1 68353121 68353179 -174311174 + (TA)n Simple_repeat Simple_repeat 2 59 0 295 222 262 16 chr1 68353400 68353526 -174310827 - MIR SINE MIR -89 173 17 450 266 22 87 chr1 68354181 68354365 -174309988 - MIR SINE MIR -63 199 28 246 211 0 0 chr1 68355201 68355239 -174309114 + L2 LINE L2 3219 3256 -16 443 213 87 24 chr1 68355681 68355808 -174308545 + MIR SINE MIR 35 169 -93 531 267 53 22 chr1 68355809 68356034 -174308319 - MLT1L LTR MaLR -34 581 350 233 276 0 0 chr1 68356122 68356180 -174308173 - MLT1J LTR MaLR -344 167 110 272 264 14 14 chr1 68357901 68357973 -174306380 + MIR SINE MIR 18 89 -119 284 317 154 72 chr1 68358002 68358333 -174306020 - L2 LINE L2 -19 3253 2896 362 283 137 34 chr1 68358604 68358809 -174305544 + MIR SINE MIR 2 227 -35 22 56 0 0 chr1 68359184 68359220 -174305133 + AT_rich Low_complexity Low_complexity 1 36 0 378 0 0 0 chr1 68359487 68359529 -174304824 + (CA)n Simple_repeat Simple_repeat 2 43 0 186 43 0 0 chr1 68361155 68361178 -174303175 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 216 207 0 35 chr1 68361378 68361436 -174302917 - MIR3 SINE MIR -21 187 132 197 333 35 11 chr1 68361493 68361580 -174302773 - MIR SINE MIR -72 136 48 411 78 0 0 chr1 68361781 68361845 -174302508 + (TG)n Simple_repeat Simple_repeat 2 65 0 21 57 0 0 chr1 68362055 68362090 -174302263 + AT_rich Low_complexity Low_complexity 1 35 0 207 298 21 43 chr1 68363795 68363889 -174300464 - MIR SINE MIR -59 203 112 264 252 37 56 chr1 68366607 68366714 -174297639 - MIR3 SINE MIR -90 118 14 21 0 0 0 chr1 68367616 68367637 -174296716 + AT_rich Low_complexity Low_complexity 1 21 0 426 315 123 0 chr1 68369025 68369187 -174295166 - MIR SINE MIR -72 190 9 285 322 173 15 chr1 68369974 68370176 -174294177 - L2 LINE L2 -220 3052 2819 204 333 24 24 chr1 68370424 68370508 -174293845 - MIR SINE MIR -84 124 41 385 167 135 52 chr1 68370637 68370733 -174293620 + L2 LINE L2 3169 3272 0 252 0 0 0 chr1 68372743 68372771 -174291582 + (TTA)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr1 68373932 68373956 -174290397 + (T)n Simple_repeat Simple_repeat 1 24 0 406 298 0 0 chr1 68375380 68375484 -174288869 - L2 LINE L2 -1 3271 3168 282 56 0 0 chr1 68377148 68377184 -174287169 + (TAA)n Simple_repeat Simple_repeat 2 37 0 301 94 16 16 chr1 68377284 68377348 -174287005 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 26 30 0 0 chr1 68378103 68378136 -174286217 + AT_rich Low_complexity Low_complexity 1 33 0 249 139 0 0 chr1 68378675 68378718 -174285635 + (A)n Simple_repeat Simple_repeat 1 43 0 24 67 0 0 chr1 68379176 68379221 -174285132 + AT_rich Low_complexity Low_complexity 1 45 0 212 0 36 0 chr1 68379749 68379777 -174284576 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 197 230 14 0 chr1 68380404 68380478 -174283875 + CT-rich Low_complexity Low_complexity 4 78 0 207 88 0 0 chr1 68381487 68381521 -174282832 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr1 68382459 68382483 -174281870 + AT_rich Low_complexity Low_complexity 1 24 0 276 120 0 0 chr1 68382513 68382563 -174281790 + (T)n Simple_repeat Simple_repeat 1 50 0 320 271 216 38 chr1 68383583 68384132 -174280221 - LTR50 LTR ERVL -126 635 8 774 284 25 0 chr1 68384137 68384334 -174280019 - MIR SINE MIR -59 203 2 425 350 81 42 chr1 68384344 68384541 -174279812 - L2 LINE L2 -2 3270 3082 1475 145 0 36 chr1 68384541 68384789 -174279564 + AluJb SINE Alu 52 290 -22 425 350 81 42 chr1 68384789 68385046 -174279307 - L2 LINE L2 -190 3082 2793 1116 241 106 15 chr1 68385081 68385422 -174278931 - MLT1I LTR MaLR 0 409 38 739 228 92 35 chr1 68385907 68386135 -174278218 + MIR SINE MIR 13 253 -9 373 352 7 14 chr1 68436495 68436637 -174227716 + MIR SINE MIR 5 145 -117 742 154 12 167 chr1 68436668 68436810 -174227543 + MER74A LTR ERVL 356 518 -40 2385 84 0 3 chr1 68436810 68437106 -174227247 - AluSc SINE Alu -14 295 1 742 154 12 167 chr1 68437106 68437145 -174227208 + MER74A LTR ERVL 518 495 -63 2330 108 0 0 chr1 68437145 68437442 -174226911 - AluSx SINE Alu -15 297 1 742 154 12 167 chr1 68437442 68437499 -174226854 + MER74A LTR ERVL 494 558 0 302 275 22 11 chr1 68437501 68437592 -174226761 - L1MC4 LINE L1 -1340 6702 6611 183 222 0 0 chr1 68437596 68437641 -174226712 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 921 235 10 5 chr1 68437648 68437848 -174226505 - MIR SINE MIR -12 250 50 886 166 66 0 chr1 68437851 68438032 -174226321 + MER3 DNA MER1_type 17 209 0 249 180 0 0 chr1 68437989 68438039 -174226314 - MER3 DNA MER1_type -119 90 41 * 316 188 43 0 chr1 68438088 68438157 -174226196 + MER103 DNA DNA 63 134 -32 688 199 108 12 chr1 68438495 68438661 -174225692 + MER5A DNA MER1_type 1 182 -7 289 323 57 16 chr1 68438663 68438787 -174225566 - MIR3 SINE MIR -36 172 44 571 223 43 0 chr1 68439133 68439272 -174225081 + MER103 DNA DNA 21 165 -1 1406 245 58 3 chr1 68439553 68439896 -174224457 + MLT1A1 LTR MaLR 1 362 -3 453 81 0 0 chr1 68440237 68440299 -174224054 + (CA)n Simple_repeat Simple_repeat 1 62 0 443 286 238 0 chr1 68440557 68440725 -174223628 + MIR SINE MIR 46 253 -9 2930 160 8 15 chr1 68441005 68441592 -174222761 + L1MA9 LINE L1 4784 5366 -780 232 111 0 0 chr1 68441593 68441629 -174222724 + LTR56 LTR ERV1 349 384 -61 2062 162 9 19 chr1 68441662 68441794 -174222559 + L1MA9 LINE L1 5354 5486 -826 2200 87 55 0 chr1 68441794 68442083 -174222270 + AluSq SINE Alu 1 305 -8 2062 162 9 19 chr1 68442083 68442370 -174221983 + L1MA9 LINE L1 5486 5769 -543 21 36 0 0 chr1 68442419 68442447 -174221906 + AT_rich Low_complexity Low_complexity 1 28 0 1379 194 56 98 chr1 68442447 68442657 -174221696 + L1MA9 LINE L1 5782 5999 -313 3544 87 24 23 chr1 68442657 68443189 -174221164 + L1PA11 LINE L1 5642 6174 0 1379 194 56 98 chr1 68443189 68443487 -174220866 + L1MA9 LINE L1 5999 6237 -75 441 0 0 0 chr1 68443487 68443536 -174220817 + (TA)n Simple_repeat Simple_repeat 1 49 0 1379 194 56 98 chr1 68443536 68443604 -174220749 + L1MA9 LINE L1 6237 6306 -6 253 281 167 21 chr1 68443962 68444058 -174220295 - MIR3 SINE MIR -30 178 69 1722 236 98 8 chr1 68444058 68444550 -174219803 - MLT1H LTR MaLR 0 549 14 599 262 99 12 chr1 68445100 68445303 -174219050 + LTR16A LTR ERVL 230 457 0 264 245 20 51 chr1 68445303 68445376 -174218977 + LTR67 LTR ERVL 475 544 -13 320 275 99 8 chr1 68445444 68445575 -174218778 - MIR SINE MIR -55 207 65 * 948 216 112 13 chr1 68445560 68445792 -174218561 + MIR SINE MIR 8 262 0 4353 139 15 0 chr1 68446982 68447729 -174216624 - L1MA8 LINE L1 -279 6012 5255 2469 154 11 8 chr1 68447739 68448213 -174216140 + L1MA8 LINE L1 4767 5241 -905 221 299 79 75 chr1 68448221 68448475 -174215878 + L2 LINE L2 2596 2850 -464 378 268 47 31 chr1 68448503 68448630 -174215723 - MIR SINE MIR -6 256 128 955 341 111 9 chr1 68448842 68449294 -174215059 + L2 LINE L2 2807 3304 -9 933 171 6 0 chr1 68449702 68449860 -174214493 + MER2 DNA MER2_type 1 159 -186 1418 135 9 18 chr1 68449878 68450107 -174214246 + MER1B DNA MER1_type 9 235 -62 363 104 0 0 chr1 68450112 68450160 -174214193 + MER1B DNA MER1_type 282 329 0 22 70 0 0 chr1 68450196 68450239 -174214114 + AT_rich Low_complexity Low_complexity 1 43 0 350 242 30 0 chr1 68450555 68450654 -174213699 - MER112 DNA MER1_type 0 260 159 1139 203 73 70 chr1 68450670 68451188 -174213165 - MER39 LTR ERV1 -2 682 2 394 272 245 0 chr1 68451205 68451352 -174213001 + L1MEc LINE L1 1616 1798 -4598 292 254 49 35 chr1 68451365 68451507 -174212846 + L1MEc LINE L1 1848 1991 -4405 726 170 79 12 chr1 68451724 68451889 -174212464 + FRAM SINE Alu 1 40 0 237 239 0 0 chr1 68451913 68452001 -174212352 + L1MEc LINE L1 2209 2296 -4100 659 238 48 48 chr1 68452002 68452292 -174212061 + L1MEc LINE L1 2222 2511 -3704 3198 128 31 41 chr1 68452333 68452987 -174211366 - L1MB7 LINE L1 -215 5969 5323 467 141 0 0 chr1 68452987 68453072 -174211281 - L1MB8 LINE L1 -1 6177 6093 4566 175 39 24 chr1 68453090 68454823 -174209530 - L1MB4 LINE L1 -6 6174 4417 369 322 23 34 chr1 68454823 68455000 -174209353 + L1MEc LINE L1 2602 2776 -3439 1445 249 88 45 chr1 68455002 68455806 -174208547 - L1M4 LINE L1 -1397 4749 3911 287 345 49 58 chr1 68455955 68456181 -174208172 - L2 LINE L2 -195 3077 2854 230 160 20 0 chr1 68456536 68456586 -174207767 + (TA)n Simple_repeat Simple_repeat 2 52 0 264 370 46 75 chr1 68458806 68459111 -174205242 - L2 LINE L2 0 3272 2977 24 0 0 0 chr1 68459185 68459209 -174205144 + AT_rich Low_complexity Low_complexity 1 24 0 671 263 0 6 chr1 68459225 68459381 -174204972 + MIR SINE MIR 21 175 -87 421 282 29 0 chr1 68459525 68459628 -174204725 + L2 LINE L2 3153 3258 -14 24 0 0 0 chr1 68459640 68459664 -174204689 + AT_rich Low_complexity Low_complexity 1 24 0 197 206 0 16 chr1 68459670 68459733 -174204620 + (TATG)n Simple_repeat Simple_repeat 1 62 0 961 261 21 8 chr1 68459738 68459976 -174204377 - MIR SINE MIR -21 241 1 228 320 76 23 chr1 68459979 68460151 -174204202 + L2 LINE L2 2378 2558 -756 259 230 46 35 chr1 68460624 68460711 -174203642 + L2 LINE L2 3223 3310 -3 601 201 16 60 chr1 68460714 68460898 -174203455 - MER104 DNA MER2_type -3 177 2 521 243 169 0 chr1 68460926 68461062 -174203291 + MIR SINE MIR 2 160 -102 220 351 11 0 chr1 68461396 68461490 -174202863 + MIR SINE MIR 167 261 -1 458 246 79 0 chr1 68461613 68461727 -174202626 + L2 LINE L2 3191 3313 0 220 288 15 15 chr1 68462686 68462752 -174201601 - MIR SINE MIR -189 73 8 1685 143 117 0 chr1 68463020 68463285 -174201068 - AluJb SINE Alu -14 298 3 366 228 152 48 chr1 68463432 68463577 -174200776 + MIR SINE MIR 103 262 0 2465 109 8 0 chr1 68463583 68463941 -174200412 - MER46B DNA MER2_type 0 236 1 747 288 52 9 chr1 68463941 68464170 -174200183 - MIR SINE MIR -16 246 8 246 205 36 72 chr1 68465203 68465286 -174199067 - MIR SINE MIR -18 244 165 1237 318 79 40 chr1 68466004 68466589 -174197764 - ERVL LTR ERVL -3055 2599 1969 1608 198 72 19 chr1 68466589 68466963 -174197390 + MSTD LTR MaLR 3 396 0 1237 318 79 40 chr1 68466963 68467224 -174197129 - ERVL LTR ERVL -3685 1969 1720 2327 118 30 0 chr1 68467272 68467610 -174196743 - MER7A DNA MER2_type 0 346 1 832 153 15 22 chr1 68467656 68467793 -174196560 + AluJo SINE Alu 1 136 -176 419 343 20 55 chr1 68467854 68468108 -174196245 - ERVL LTR ERVL -3429 1663 1323 621 288 67 52 chr1 68468243 68468826 -174195527 - L1MEd LINE L1 -5103 1016 477 4853 167 23 2 chr1 68469831 68470954 -174193399 - L1MB8 LINE L1 0 6178 5031 817 228 171 0 chr1 68470952 68471215 -174193138 - L1M4b LINE L1 -5347 1512 1205 * 2845 273 52 39 chr1 68471684 68472642 -174191711 - L1M4b LINE L1 -5635 1224 11 210 269 0 0 chr1 68472683 68472735 -174191618 - L2 LINE L2 0 3313 3262 233 29 29 0 chr1 68473087 68473121 -174191232 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 809 81 0 0 chr1 68473128 68473227 -174191126 - AluSp/q SINE Alu -37 276 178 1554 147 44 12 chr1 68473231 68473482 -174190871 - AluSx SINE Alu -48 264 6 477 307 57 10 chr1 68473497 68473689 -174190664 - MIR SINE MIR -55 207 7 24 0 0 0 chr1 68474347 68474371 -174189982 + AT_rich Low_complexity Low_complexity 1 24 0 2154 112 7 0 chr1 68474602 68474897 -174189456 + AluSx SINE Alu 1 297 -15 673 80 0 0 chr1 68475238 68475326 -174189027 - AluSg/x SINE Alu -4 305 218 15788 190 33 10 chr1 68475373 68477309 -174187044 - L1PB1 LINE L1 0 6867 4976 315 0 0 0 chr1 68477309 68477344 -174187009 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 15788 190 33 10 chr1 68477344 68481499 -174182854 - L1PB1 LINE L1 -1891 4976 681 7402 162 30 20 chr1 68481505 68482291 -174182062 - L1 LINE L1 -1393 6172 5395 1485 150 0 16 chr1 68482291 68482537 -174181816 - AluJb SINE Alu 0 312 71 7402 162 30 20 chr1 68482537 68482809 -174181544 - L1 LINE L1 -2170 5395 5127 802 28 28 0 chr1 68482809 68482917 -174181436 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 7402 162 30 20 chr1 68482917 68483236 -174181117 - L1 LINE L1 -2438 5127 4781 1785 172 17 0 chr1 68483251 68483542 -174180811 - AluJo SINE Alu -16 296 1 23110 121 34 15 chr1 68483542 68487086 -174177267 - L1 LINE L1 -3956 3609 1 2316 119 0 0 chr1 68488948 68489250 -174175103 - AluSx SINE Alu -9 303 2 901 265 11 43 chr1 68489489 68489768 -174174585 - MLT1J LTR MaLR -238 273 4 471 335 85 43 chr1 68490088 68490522 -174173831 - L2 LINE L2 -213 3059 2599 278 152 0 22 chr1 68491536 68491582 -174172771 + MLT1A1 LTR MaLR 310 354 -11 1920 176 8 60 chr1 68492137 68492197 -174172156 - MLT1A1 LTR MaLR -2 465 403 1950 137 23 0 chr1 68492197 68492497 -174171856 + AluSx SINE Alu 1 307 -5 1920 176 8 60 chr1 68492497 68492823 -174171530 - MLT1A1 LTR MaLR -64 403 1 558 228 18 54 chr1 68493009 68493176 -174171177 + L1MC5 LINE L1 7727 7887 -74 669 226 79 0 chr1 68493234 68493398 -174170955 + MIR SINE MIR 85 261 -1 686 259 114 36 chr1 68493398 68493730 -174170623 - MLT1L LTR MaLR -119 496 139 715 287 24 48 chr1 68495005 68495298 -174169055 - L2 LINE L2 -1 3312 3027 1342 221 149 6 chr1 68495318 68495653 -174168700 + MLT1I LTR MaLR 13 395 -14 4176 326 124 18 chr1 68495673 68496153 -174168200 - L2 LINE L2 -282 3031 2603 1481 168 62 117 chr1 68496153 68496539 -174167814 - MLT1A1 LTR MaLR 0 365 1 4176 326 124 18 chr1 68496539 68497646 -174166707 - L2 LINE L2 -710 2603 1614 2158 125 0 0 chr1 68497646 68497933 -174166420 + AluSx SINE Alu 1 287 -25 414 0 0 0 chr1 68497936 68497982 -174166371 + (TAA)n Simple_repeat Simple_repeat 3 48 0 4176 326 124 18 chr1 68497982 68498258 -174166095 - L2 LINE L2 -1700 1613 949 201 291 126 10 chr1 68498286 68498389 -174165964 - MIR SINE MIR -17 245 131 2043 197 81 5 chr1 68498483 68498879 -174165474 - MSTB LTR MaLR 0 426 1 5749 201 8 5 chr1 68498879 68499899 -174164454 - MSTB-int LTR MaLR 0 1651 629 798 118 7 22 chr1 68499883 68500018 -174164335 - MSTB-int LTR MaLR -1518 133 1 * 2349 157 98 3 chr1 68500018 68500407 -174163946 - MSTB LTR MaLR 0 426 1 2881 0 0 0 chr1 68501260 68501564 -174162789 + AluYa5 SINE Alu 1 304 -7 1791 163 3 29 chr1 68501637 68501963 -174162390 + AluJo SINE Alu 1 312 0 242 313 62 25 chr1 68502115 68502195 -174162158 - MIR SINE MIR -120 88 6 417 263 36 62 chr1 68502867 68503211 -174161142 + MLT1L LTR MaLR 1 393 -222 706 193 9 0 chr1 68503477 68503591 -174160762 - FRAM SINE Alu -62 114 1 834 192 148 0 chr1 68503934 68504116 -174160237 + MER58A DNA MER1_type 1 209 -15 2222 116 3 0 chr1 68504512 68504814 -174159539 - AluSg SINE Alu -3 307 5 343 303 98 54 chr1 68504817 68505094 -174159259 + L2 LINE L2 3020 3308 -5 297 183 140 75 chr1 68505380 68505473 -174158880 + MIR SINE MIR 68 167 -41 192 77 0 0 chr1 68506918 68506944 -174157409 + (TA)n Simple_repeat Simple_repeat 1 26 0 27699 58 3 0 chr1 68506989 68511268 -174153085 - L1PA6 LINE L1 0 6154 1866 231 272 96 81 chr1 68511563 68511634 -174152719 + MIR SINE MIR 28 96 -166 2228 124 3 0 chr1 68511634 68511933 -174152420 - AluSx SINE Alu -12 300 1 231 272 96 81 chr1 68511933 68511997 -174152356 + MIR SINE MIR 96 165 -97 2176 116 0 0 chr1 68512096 68512380 -174151973 - AluSx SINE Alu -26 286 3 365 278 56 19 chr1 68512414 68512522 -174151831 - L2 LINE L2 -6 3266 3155 1921 157 3 13 chr1 68512948 68513261 -174151092 + AluJb SINE Alu 1 310 -2 863 248 50 9 chr1 68513367 68513589 -174150764 + MLT1B LTR MaLR 1 231 -159 8746 122 170 23 chr1 68513691 68515271 -174149082 - L1P LINE L1 -4322 1824 13 186 323 32 0 chr1 68515401 68515463 -174148890 - L2 LINE L2 -241 3031 2968 318 296 23 38 chr1 68515569 68515701 -174148652 - MIR SINE MIR -98 164 35 741 264 22 11 chr1 68516511 68516693 -174147660 - MIR SINE MIR -48 214 31 1438 180 57 41 chr1 68518014 68518330 -174146023 + MER33 DNA MER1_type 1 321 -3 23 33 0 0 chr1 68518486 68518516 -174145837 + AT_rich Low_complexity Low_complexity 1 30 0 578 343 279 18 chr1 68518538 68519630 -174144723 + L3 LINE CR1 185 1561 -16 658 181 71 45 chr1 68519818 68519973 -174144380 + MER63A DNA MER1_type 51 209 -1 190 344 86 0 chr1 68520354 68520447 -174143906 - MIR SINE MIR -87 175 75 855 164 0 0 chr1 68520821 68520949 -174143404 + FLAM_A SINE Alu 4 131 -2 515 265 54 0 chr1 68520957 68521123 -174143230 + MIR SINE MIR 77 251 -11 227 216 0 25 chr1 68521168 68521233 -174143120 + L2 LINE L2 3176 3279 -34 312 127 0 0 chr1 68522174 68522229 -174142124 + (TA)n Simple_repeat Simple_repeat 1 55 0 237 294 0 0 chr1 68522573 68522624 -174141729 - L2 LINE L2 -18 3254 3204 2190 135 0 0 chr1 68522665 68522977 -174141376 + AluSq SINE Alu 1 312 -1 199 295 242 0 chr1 68524391 68524486 -174139867 + L2 LINE L2 3134 3251 -21 707 83 33 0 chr1 68524971 68525092 -174139261 + (TC)n Simple_repeat Simple_repeat 2 126 0 327 146 0 0 chr1 68525546 68525601 -174138752 + (TG)n Simple_repeat Simple_repeat 2 56 0 197 192 0 19 chr1 68526265 68526317 -174138036 + CT-rich Low_complexity Low_complexity 2 52 0 229 179 0 0 chr1 68526385 68526424 -174137929 - MLT1B LTR MaLR 0 390 352 6709 90 8 2 chr1 68526431 68527333 -174137020 + L1PA14 LINE L1 5254 6160 -1 1157 147 137 0 chr1 68527365 68527576 -174136777 - MLT1C LTR MaLR -25 442 203 1706 257 126 35 chr1 68527577 68528261 -174136092 - HAL1 LINE L1 -1751 756 11 1490 173 44 0 chr1 68528387 68528659 -174135694 + L1MA9 LINE L1 5825 6108 -204 1319 141 54 45 chr1 68528659 68528901 -174135452 + AluJb SINE Alu 45 288 -24 995 112 56 39 chr1 68528909 68529088 -174135265 + L1MA9 LINE L1 6093 6274 -38 2312 117 0 0 chr1 68529092 68529400 -174134953 + AluSx SINE Alu 1 308 -4 430 326 107 40 chr1 68529589 68529917 -174134436 + L2 LINE L2 2628 2977 -337 409 234 32 40 chr1 68530006 68530130 -174134223 + L2 LINE L2 3187 3309 -4 327 171 85 49 chr1 68530624 68530706 -174133647 + MIR3 SINE MIR 124 208 0 263 271 101 31 chr1 68531079 68531208 -174133145 + MLT1I LTR MaLR 13 150 -259 396 171 16 125 chr1 68531339 68531490 -174132863 + MLT1H LTR MaLR 417 549 0 2260 112 3 0 chr1 68531547 68531851 -174132502 - AluSq SINE Alu -8 305 1 300 114 23 0 chr1 68531962 68532006 -174132347 - MER57A LTR ERV1 -64 339 295 405 259 15 30 chr1 68532025 68532160 -174132193 + MIR SINE MIR 128 260 -2 8479 162 121 91 chr1 68532262 68533383 -174130970 + L1MB3 LINE L1 20 1106 -5313 750 147 0 0 chr1 68533383 68533492 -174130861 + AluSc SINE Alu 129 237 -72 1337 164 29 0 chr1 68533492 68533700 -174130653 + Tigger3(Golem) DNA MER2_type 2816 3029 0 8479 162 121 91 chr1 68533700 68534055 -174130298 + L1MB3 LINE L1 1106 1449 -4970 2330 91 3 0 chr1 68534055 68534353 -174130000 - AluSp SINE Alu -14 299 1 8479 162 121 91 chr1 68534353 68534814 -174129539 + L1MB3 LINE L1 1449 1895 -4524 2885 22 0 0 chr1 68534814 68535132 -174129221 + AluYb8 SINE Alu 1 318 0 8479 162 121 91 chr1 68535132 68536889 -174127464 + L1MB3 LINE L1 1895 3598 -2821 510 80 0 102 chr1 68536889 68536977 -174127376 - MADE1 DNA Mariner -1 79 1 8479 162 121 91 chr1 68536977 68537254 -174127099 + L1MB3 LINE L1 3598 6419 0 22 35 0 0 chr1 68537268 68537297 -174127056 + AT_rich Low_complexity Low_complexity 1 29 0 224 227 0 0 chr1 68537391 68537435 -174126918 + (TG)n Simple_repeat Simple_repeat 2 45 0 337 317 144 0 chr1 68537734 68537838 -174126515 - L2 LINE L2 0 3272 3154 397 259 36 0 chr1 68537847 68537959 -174126394 + MER117 DNA MER1_type 4 119 -78 384 320 77 65 chr1 68538092 68538607 -174125746 - L2 LINE L2 -185 3087 2553 519 198 130 79 chr1 68538799 68538976 -174125377 - MIR SINE MIR -73 189 4 319 329 71 7 chr1 68539328 68539483 -174124870 + MIR3 SINE MIR 16 180 -28 596 250 23 0 chr1 68540704 68540832 -174123521 - L2 LINE L2 0 3272 3142 266 316 113 36 chr1 68541178 68541346 -174123007 + MIR SINE MIR 31 211 -51 216 0 0 0 chr1 68541377 68541401 -174122952 + (TTA)n Simple_repeat Simple_repeat 3 26 0 261 0 0 0 chr1 68541401 68541430 -174122923 + (TAG)n Simple_repeat Simple_repeat 1 29 0 421 283 81 68 chr1 68541643 68542070 -174122283 + L2 LINE L2 2735 3237 -76 436 317 14 0 chr1 68543806 68543948 -174120405 + MIR SINE MIR 114 257 -5 266 189 19 19 chr1 68545037 68545090 -174119263 + MLT1A1 LTR MaLR 148 200 -165 4920 279 58 33 chr1 68545155 68546963 -174117390 + HERV16 LTR ERVL 455 2308 -2688 195 295 21 0 chr1 68547048 68547143 -174117210 - L2 LINE L2 -1214 2100 2004 248 77 26 0 chr1 68547288 68547327 -174117026 + (GGAGA)n Simple_repeat Simple_repeat 1 40 0 404 252 119 44 chr1 68547595 68547889 -174116464 - LTR50 LTR ERVL 0 795 480 437 243 124 60 chr1 68547998 68548182 -174116171 - LTR50 LTR ERVL -588 207 12 1810 167 21 42 chr1 68548182 68548594 -174115759 + MLT1A1 LTR MaLR 1 364 -1 307 269 71 44 chr1 68549070 68549367 -174114986 + L1M4 LINE L1 4304 4608 -1538 348 221 15 0 chr1 68549502 68549570 -174114783 + FLAM SINE Alu 58 126 -7 1960 171 0 0 chr1 68549659 68549958 -174114395 + AluJb SINE Alu 1 299 -13 2194 90 11 0 chr1 68550058 68550381 -174113972 - AluSg1 SINE Alu 0 326 1 202 143 143 0 chr1 68550519 68550561 -174113792 - L2 LINE L2 -8 3264 3217 1882 140 0 3 chr1 68551046 68551331 -174113022 + AluJb SINE Alu 1 284 -28 396 0 0 0 chr1 68551331 68551375 -174112978 + (CA)n Simple_repeat Simple_repeat 2 45 0 296 287 21 53 chr1 68551408 68551502 -174112851 - L3 LINE CR1 -26 1551 1461 190 324 0 0 chr1 68551619 68551693 -174112660 + L2 LINE L2 2456 2529 -785 2088 129 11 0 chr1 68551723 68552010 -174112343 + AluSx SINE Alu 1 290 -22 35 0 0 0 chr1 68552010 68552045 -174112308 + AT_rich Low_complexity Low_complexity 1 35 0 2040 134 3 0 chr1 68552137 68552421 -174111932 + AluSx SINE Alu 1 285 -27 495 0 0 0 chr1 68552422 68552477 -174111876 + (CA)n Simple_repeat Simple_repeat 2 56 0 391 346 80 43 chr1 68552538 68552914 -174111439 + L2 LINE L2 2804 3193 -79 709 293 80 57 chr1 68552979 68553454 -174110899 + MLT1K LTR MaLR 103 588 0 193 224 121 0 chr1 68553523 68553581 -174110772 + L2 LINE L2 3249 3313 0 1694 181 0 40 chr1 68554923 68555248 -174109105 + AluJo SINE Alu 1 312 0 1911 138 12 55 chr1 68555296 68555621 -174108732 + AluJb SINE Alu 1 311 -1 870 191 0 0 chr1 68555621 68555773 -174108580 - L1MA8 LINE L1 -13 6278 6127 286 315 79 0 chr1 68556743 68556870 -174107483 - L2 LINE L2 0 3272 3136 2129 108 0 11 chr1 68556937 68557246 -174107107 + AluSx SINE Alu 1 306 0 326 343 7 7 chr1 68557422 68557568 -174106785 + MIR3 SINE MIR 52 197 -11 1708 153 8 8 chr1 68558379 68558505 -174105848 + AluSx SINE Alu 1 126 -186 2510 68 0 0 chr1 68558505 68558800 -174105553 - AluY SINE Alu -16 295 1 1708 153 8 8 chr1 68558800 68558941 -174105412 + AluSx SINE Alu 125 268 -44 401 282 154 6 chr1 68559075 68559231 -174105122 - MIR SINE MIR -55 207 29 2534 75 0 0 chr1 68559719 68560024 -174104329 - AluY SINE Alu -6 305 1 963 164 0 0 chr1 68560025 68560165 -174104188 + AluSg/x SINE Alu 127 266 -44 207 0 0 0 chr1 68561408 68561431 -174102922 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2185 111 0 0 chr1 68561435 68561714 -174102639 - AluSg SINE Alu -31 279 1 401 380 25 21 chr1 68562127 68562453 -174101900 + ERVL LTR ERVL 376 702 -5062 1566 173 55 42 chr1 68563070 68563244 -174101109 - AluJb SINE Alu -1 311 130 2422 74 3 0 chr1 68563244 68563540 -174100813 - AluY SINE Alu -14 297 1 1566 173 55 42 chr1 68563540 68563672 -174100681 - AluJb SINE Alu -182 130 1 1236 292 59 9 chr1 68563937 68564490 -174099863 + ERVL LTR ERVL 1758 2334 -3320 231 146 0 0 chr1 68565040 68565081 -174099272 + (A)n Simple_repeat Simple_repeat 1 41 0 202 164 36 0 chr1 68565222 68565277 -174099076 + GA-rich Low_complexity Low_complexity 5 61 0 1036 93 0 0 chr1 68565344 68565473 -174098880 + AluSg/x SINE Alu 172 300 -12 24 53 0 0 chr1 68565507 68565545 -174098808 + AT_rich Low_complexity Low_complexity 1 38 0 2616 50 0 0 chr1 68565970 68566272 -174098081 - AluY SINE Alu -9 302 1 207 0 0 0 chr1 68566343 68566366 -174097987 + (CCCTG)n Simple_repeat Simple_repeat 1 23 0 1932 126 65 0 chr1 68566931 68567266 -174097087 - AluSx SINE Alu 0 354 1 280 304 96 9 chr1 68567309 68567424 -174096929 - MIR SINE MIR -117 145 21 1758 142 51 0 chr1 68567809 68568084 -174096269 + AluSx SINE Alu 1 289 -23 385 125 47 0 chr1 68568092 68568156 -174096197 + LTR50 LTR ERVL 729 795 0 1070 272 59 33 chr1 68568354 68568671 -174095682 + HAL1b LINE L1 302 634 -714 1211 153 0 72 chr1 68568671 68568766 -174095587 - MER3 DNA MER1_type 0 209 109 2341 87 3 3 chr1 68568766 68569066 -174095287 + AluSc SINE Alu 2 301 -8 1211 153 0 72 chr1 68569066 68569193 -174095160 - MER3 DNA MER1_type -100 109 3 1070 272 59 33 chr1 68569193 68569301 -174095052 + HAL1b LINE L1 634 738 -610 2397 211 115 78 chr1 68569461 68570534 -174093819 + L1MC5 LINE L1 6411 7543 -418 292 255 65 60 chr1 68570579 68570763 -174093590 + L1ME3A LINE L1 5927 6111 -59 2375 86 0 0 chr1 68570779 68571071 -174093282 + AluSc SINE Alu 1 292 -17 186 43 0 0 chr1 68571155 68571178 -174093175 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 891 184 0 19 chr1 68571181 68571339 -174093014 - FRAM SINE Alu -30 146 1 1058 326 29 14 chr1 68571339 68571784 -174092569 + ERVL LTR ERVL 2445 2896 -2868 758 296 84 53 chr1 68571790 68572276 -174092077 + ERVL LTR ERVL 3002 3502 -2262 1176 318 52 37 chr1 68572442 68573071 -174091282 + ERVL LTR ERVL 3697 4335 -1429 1854 141 0 0 chr1 68573099 68573362 -174090991 + AluJb SINE Alu 25 287 -25 1665 173 3 36 chr1 68573481 68573782 -174090571 + AluJo SINE Alu 1 291 -21 304 330 20 10 chr1 68573941 68574041 -174090312 + L2 LINE L2 3165 3265 -7 212 246 35 0 chr1 68574081 68574138 -174090215 + L2 LINE L2 3255 3313 0 21 71 0 0 chr1 68574141 68574183 -174090170 + AT_rich Low_complexity Low_complexity 1 42 0 2196 143 40 3 chr1 68574247 68574576 -174089777 + MER58B DNA MER1_type 1 341 0 852 126 0 49 chr1 68576293 68576436 -174087917 - FLAM_C SINE Alu -3 140 5 475 307 53 77 chr1 68577545 68577962 -174086391 - L2 LINE L2 -8 3305 2899 706 328 25 0 chr1 68578086 68578330 -174086023 - L2 LINE L2 -646 2668 2419 321 332 25 55 chr1 68578900 68579102 -174085251 - L2 LINE L2 -203 3069 2874 257 0 0 29 chr1 68580959 68580993 -174083360 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 355 342 17 0 chr1 68581187 68581307 -174083046 - MIR3 SINE MIR -48 160 39 2352 104 3 0 chr1 68581871 68582179 -174082174 - AluSp SINE Alu -4 309 1 593 292 43 34 chr1 68582286 68582519 -174081834 - MIR SINE MIR 0 262 28 231 413 13 0 chr1 68582559 68582714 -174081639 + L2 LINE L2 2220 2376 -938 1427 128 32 32 chr1 68582769 68582988 -174081365 + MER20 DNA MER1_type 1 219 0 291 323 79 35 chr1 68583261 68583515 -174080838 - L2 LINE L2 -433 2881 2617 227 322 112 20 chr1 68583565 68583717 -174080636 - MIR SINE MIR -2 260 95 289 242 15 0 chr1 68585673 68585739 -174078614 - L2 LINE L2 -4 3268 3202 540 219 15 0 chr1 68585853 68585966 -174078387 - MER5A DNA MER1_type -71 118 4 246 368 0 0 chr1 68585976 68586082 -174078271 - L2 LINE L2 -47 3266 3161 592 219 119 67 chr1 68586083 68586293 -174078060 - MER2 DNA MER2_type -1 344 124 775 182 8 0 chr1 68586390 68586522 -174077831 - MER2 DNA MER2_type -209 136 4 425 317 155 6 chr1 68586579 68586740 -174077613 - L2 LINE L2 -193 3079 2895 212 235 39 0 chr1 68586728 68586779 -174077574 - L2 LINE L2 -8 3305 3253 * 186 286 71 0 chr1 68586988 68587030 -174077323 - L2 LINE L2 -86 3186 3142 377 156 0 16 chr1 68587074 68587138 -174077215 + L2 LINE L2 3251 3313 0 365 172 0 16 chr1 68587179 68587243 -174077110 + L2 LINE L2 3251 3313 0 368 127 0 0 chr1 68587293 68587348 -174077005 + L2 LINE L2 3259 3313 0 25 0 0 0 chr1 68588455 68588480 -174075873 + AT_rich Low_complexity Low_complexity 1 25 0 338 360 16 8 chr1 68588611 68588736 -174075617 + L3 LINE CR1 985 1110 -467 375 167 148 148 chr1 68588786 68588872 -174075481 - MIR SINE MIR -3 259 174 2416 93 0 3 chr1 68588872 68589182 -174075171 + AluSg SINE Alu 1 309 -1 595 89 13 0 chr1 68589189 68589268 -174075085 - MADE1 DNA Mariner 0 80 1 375 167 148 148 chr1 68589268 68589335 -174075018 - MIR SINE MIR -93 169 98 188 357 56 35 chr1 68589455 68589598 -174074755 + L2 LINE L2 3122 3267 -5 263 309 27 60 chr1 68589672 68589821 -174074532 + L1MC4a LINE L1 5539 5682 -439 203 220 20 0 chr1 68589831 68589881 -174074472 + (TA)n Simple_repeat Simple_repeat 2 52 0 538 263 83 37 chr1 68589884 68590054 -174074299 + L1MC4a LINE L1 5662 5823 -298 340 187 67 0 chr1 68590054 68590129 -174074224 + MER116 DNA Mariner 1 80 0 538 263 83 37 chr1 68590129 68590295 -174074058 + L1MC4a LINE L1 5823 6017 -104 2308 96 0 0 chr1 68590374 68590667 -174073686 + AluSc SINE Alu 1 293 -16 680 229 0 0 chr1 68591380 68591524 -174072829 - L1ME2 LINE L1 -9 6155 6012 21 0 0 0 chr1 68591550 68591571 -174072782 + AT_rich Low_complexity Low_complexity 1 21 0 2029 143 7 0 chr1 68591578 68591878 -174072475 + AluSx SINE Alu 1 302 -10 1479 221 6 21 chr1 68591883 68592214 -174072139 - L1ME2 LINE L1 -152 6014 5689 2259 99 13 0 chr1 68592391 68592695 -174071658 + AluSq SINE Alu 1 308 -5 28 0 0 0 chr1 68594218 68594246 -174070107 + AT_rich Low_complexity Low_complexity 1 28 0 785 228 57 0 chr1 68594468 68594661 -174069692 - MIR SINE MIR -10 252 49 257 286 0 0 chr1 68594859 68594915 -174069438 - L2 LINE L2 0 3272 3217 2308 74 0 52 chr1 68594981 68595291 -174069062 + AluSq SINE Alu 3 296 -17 2246 95 0 58 chr1 68595292 68595619 -174068734 + AluSq SINE Alu 1 308 -5 223 254 0 18 chr1 68595643 68595698 -174068655 + GA-rich Low_complexity Low_complexity 2 55 0 1056 293 78 68 chr1 68595708 68596119 -174068234 - L2 LINE L2 -170 3143 2737 2172 87 10 42 chr1 68596119 68596430 -174067923 - AluSq SINE Alu -12 301 1 1056 293 78 68 chr1 68596430 68596540 -174067813 - L2 LINE L2 -576 2737 2630 1670 205 0 3 chr1 68596540 68596847 -174067506 + AluJb SINE Alu 1 306 -6 1056 293 78 68 chr1 68596847 68597091 -174067262 - L2 LINE L2 -683 2630 2375 769 203 59 20 chr1 68597158 68597311 -174067042 + MLT1E LTR MaLR 317 475 -118 199 319 115 9 chr1 68597700 68597813 -174066540 - L3 LINE CR1 -6 1571 1447 488 288 44 19 chr1 68597818 68597978 -174066375 + MIR SINE MIR 28 191 -71 221 286 63 0 chr1 68599309 68599335 -174065018 + MIR SINE MIR 65 88 -120 2595 82 51 28 chr1 68599335 68599408 -174064945 - THE1B LTR MaLR 0 364 294 2492 60 0 10 chr1 68599408 68599709 -174064644 + AluY SINE Alu 1 298 -13 2595 82 51 28 chr1 68599709 68599991 -174064362 - THE1B LTR MaLR -70 294 1 221 286 63 0 chr1 68599991 68600027 -174064326 + MIR SINE MIR 88 131 -77 448 329 24 6 chr1 68600784 68600948 -174063405 + MIR SINE MIR 56 222 -40 2393 87 3 0 chr1 68601089 68601389 -174062964 - AluSp SINE Alu -12 301 1 423 0 0 0 chr1 68601390 68601437 -174062916 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 1749 170 3 29 chr1 68601438 68601744 -174062609 - AluJo SINE Alu -14 298 1 310 337 22 0 chr1 68602149 68602238 -174062115 + L2 LINE L2 3182 3272 0 2234 120 0 0 chr1 68602414 68602722 -174061631 - AluSq SINE Alu -5 308 1 593 239 13 19 chr1 68602739 68603135 -174061218 + MLT2E LTR ERVL 1 462 -166 713 207 14 0 chr1 68603335 68603475 -174060878 + MLT2E LTR ERVL 487 628 0 283 276 89 16 chr1 68603685 68603808 -174060545 - MER117 DNA MER1_type -13 184 53 243 167 0 0 chr1 68603980 68604022 -174060331 + L2 LINE L2 3272 3313 0 2261 119 0 6 chr1 68604091 68604403 -174059950 - AluSx SINE Alu -2 310 1 1513 187 82 0 chr1 68605309 68605577 -174058776 + AluJo SINE Alu 5 294 -18 421 262 66 0 chr1 68605714 68605836 -174058517 + L2 LINE L2 3184 3313 0 2354 146 80 62 chr1 68605861 68606349 -174058004 + MLT1D LTR MaLR 9 505 0 587 288 29 78 chr1 68606406 68606511 -174057842 - MIR SINE MIR 0 262 153 1796 176 33 0 chr1 68606511 68606813 -174057540 + AluJb SINE Alu 1 312 0 587 288 29 78 chr1 68606813 68606963 -174057390 - MIR SINE MIR -109 153 20 308 95 0 0 chr1 68607334 68607376 -174056977 + Alu SINE Alu 1 42 -266 2048 130 3 3 chr1 68607376 68607676 -174056677 + AluSx SINE Alu 11 310 -2 350 157 0 14 chr1 68607676 68607746 -174056607 + GA-rich Low_complexity Low_complexity 1 69 0 389 212 112 47 chr1 68607778 68607948 -174056405 - MIR SINE MIR -10 252 72 189 341 111 44 chr1 68608124 68608259 -174056094 - L2 LINE L2 -5 3267 3124 2185 117 0 0 chr1 68608479 68608777 -174055576 + AluSx SINE Alu 1 298 -14 2560 95 17 0 chr1 68608900 68609248 -174055105 + L1PA16 LINE L1 5804 6157 -9 674 177 9 0 chr1 68609267 68609380 -174054973 + MLT1D LTR MaLR 308 421 -84 480 347 74 36 chr1 68609556 68609919 -174054434 - L2 LINE L2 -493 2821 2445 6927 130 15 11 chr1 68609992 68610398 -174053955 + L1MC1 LINE L1 4901 5304 -1029 1654 155 9 73 chr1 68610398 68610532 -174053821 + AluJo SINE Alu 1 142 -170 2423 91 0 0 chr1 68610532 68610839 -174053514 + AluSg1 SINE Alu 1 307 -2 1654 155 9 73 chr1 68610839 68611021 -174053332 + AluJo SINE Alu 142 297 -15 6927 130 15 11 chr1 68611021 68612035 -174052318 + L1MC1 LINE L1 5304 6327 -6 547 216 15 30 chr1 68612127 68612261 -174052092 - MIR SINE MIR -103 159 28 1403 217 16 20 chr1 68612298 68612602 -174051751 - MLT1D LTR MaLR 0 505 203 1688 228 64 7 chr1 68612602 68613054 -174051299 + L1MDa LINE L1 1679 2156 -4384 904 163 0 36 chr1 68613054 68613220 -174051133 - AluSg/x SINE Alu -15 297 138 1870 214 49 14 chr1 68613258 68613745 -174050608 + L1MDa LINE L1 2147 2650 -3890 652 81 0 0 chr1 68613750 68613836 -174050517 - MLT1D LTR MaLR 0 505 420 1027 203 63 10 chr1 68613836 68614141 -174050212 + L1ME3 LINE L1 5753 6318 -16 2097 124 24 0 chr1 68614146 68614437 -174049916 - AluSq SINE Alu -13 300 3 432 297 74 25 chr1 68614569 68614771 -174049582 + MIR SINE MIR 5 216 -46 249 304 148 0 chr1 68614766 68614901 -174049452 - MIR SINE MIR -2 260 106 * 219 279 116 0 chr1 68615120 68615206 -174049147 + MIR SINE MIR 143 238 -24 308 286 71 0 chr1 68615314 68615412 -174048941 - L2 LINE L2 -285 3028 2924 2324 109 3 3 chr1 68615412 68615715 -174048638 + AluSx SINE Alu 1 303 -9 841 158 0 15 chr1 68615735 68615868 -174048485 + FLAM_C SINE Alu 3 133 0 407 231 106 0 chr1 68615900 68616004 -174048349 - L2 LINE L2 -560 2754 2640 2296 71 0 0 chr1 68616105 68616387 -174047966 - AluY SINE Alu -29 282 1 2135 130 0 0 chr1 68617489 68617782 -174046571 + AluSq SINE Alu 5 297 -16 1060 83 0 0 chr1 68618506 68618638 -174045715 - AluSg/x SINE Alu -11 301 170 302 239 120 0 chr1 68618821 68618913 -174045440 + L2 LINE L2 3187 3289 -24 346 322 115 38 chr1 68620509 68620692 -174043661 + MIR3 SINE MIR 3 199 -9 2160 118 23 0 chr1 68621325 68621630 -174042723 + AluSx SINE Alu 1 312 0 574 286 86 92 chr1 68622348 68622827 -174041526 - MLT1K LTR MaLR -27 561 86 857 265 75 57 chr1 68622926 68623258 -174041095 + Charlie2 DNA MER1_type 2 339 -2523 413 149 97 90 chr1 68623296 68623430 -174040923 + Charlie2 DNA MER1_type 2247 2381 -481 1701 133 6 85 chr1 68623482 68623812 -174040541 - AluJb SINE Alu -8 304 1 1218 201 63 9 chr1 68623823 68624142 -174040211 + Charlie2 DNA MER1_type 2483 2818 -44 291 222 139 37 chr1 68624200 68624308 -174040045 - L2 LINE L2 -8 3305 3187 185 302 57 0 chr1 68624322 68624375 -174039978 - L2 LINE L2 -8 3264 3209 1543 161 4 34 chr1 68624452 68624719 -174039634 + AluJo SINE Alu 23 281 -31 1848 151 3 29 chr1 68625086 68625398 -174038955 + AluSx SINE Alu 5 308 -4 940 101 0 0 chr1 68625523 68625642 -174038711 + FRAM SINE Alu 40 158 -18 802 120 45 30 chr1 68625769 68625902 -174038451 + AluJo SINE Alu 1 135 -177 997 204 49 9 chr1 68625902 68626128 -174038225 + L1MB4 LINE L1 5934 6168 -12 2138 101 0 4 chr1 68627150 68627428 -174036925 + AluSc SINE Alu 1 277 -32 2106 119 27 0 chr1 68627470 68627763 -174036590 + AluSx SINE Alu 1 301 -11 1632 176 0 30 chr1 68628064 68628360 -174035993 - AluJb SINE Alu -5 307 21 1417 206 112 3 chr1 68628586 68628882 -174035471 + MLT1A1 LTR MaLR 1 328 -37 2281 121 0 0 chr1 68628882 68629189 -174035164 + AluSx SINE Alu 1 307 -5 254 149 50 0 chr1 68629208 68629258 -174035095 + MLT1A2 LTR MaLR 331 374 0 2317 109 3 0 chr1 68629921 68630224 -174034129 + AluSq SINE Alu 1 304 -9 2138 107 20 10 chr1 68630341 68630640 -174033713 + AluSp SINE Alu 1 302 -11 339 25 0 0 chr1 68630640 68630680 -174033673 + (TA)n Simple_repeat Simple_repeat 2 41 0 622 159 8 15 chr1 68631139 68631271 -174033082 + GA-rich Low_complexity Low_complexity 3 133 0 604 152 0 0 chr1 68631322 68631401 -174032952 + AluJ/FLAM SINE Alu 2 80 -232 1770 158 21 3 chr1 68631668 68631952 -174032401 + AluJb SINE Alu 1 289 -23 239 226 0 0 chr1 68632851 68632904 -174031449 + MLT1K LTR MaLR 517 569 -19 334 252 103 0 chr1 68633065 68633172 -174031181 - MER103 DNA DNA -46 120 3 552 211 164 12 chr1 68634545 68634716 -174029637 + L2 LINE L2 3113 3309 -4 2258 108 3 13 chr1 68634964 68635280 -174029073 + AluSq SINE Alu 1 313 0 239 233 0 50 chr1 68635409 68635469 -174028884 + L2 LINE L2 3029 3085 -228 854 166 41 7 chr1 68635480 68635625 -174028728 - AluJo SINE Alu -162 150 1 305 194 0 14 chr1 68636008 68636080 -174028273 + CT-rich Low_complexity Low_complexity 2 72 0 762 174 0 0 chr1 68636102 68636211 -174028142 - FLAM_C SINE Alu -33 110 2 232 135 19 0 chr1 68636218 68636270 -174028083 - L1MA10 LINE L1 0 6334 6282 647 240 14 63 chr1 68636278 68636499 -174027854 - L1ME1 LINE L1 -17 6149 5940 369 231 0 39 chr1 68636772 68636876 -174027477 - L1ME1 LINE L1 -298 5823 5724 290 275 93 72 chr1 68636881 68636985 -174027368 - L2 LINE L2 -4 3309 3198 2334 93 7 0 chr1 68636985 68637285 -174027068 + AluSp SINE Alu 1 302 -11 290 275 93 72 chr1 68637285 68637373 -174026980 - L2 LINE L2 -115 3198 3113 687 213 0 57 chr1 68637450 68637591 -174026762 - FLAM_A SINE Alu 0 133 1 25 31 0 0 chr1 68637736 68637768 -174026585 + AT_rich Low_complexity Low_complexity 1 32 0 1866 152 0 13 chr1 68637768 68638083 -174026270 + AluJb SINE Alu 1 311 -1 254 276 209 0 chr1 68638270 68638404 -174025949 + L2 LINE L2 2934 3095 -177 432 320 96 0 chr1 68638768 68638924 -174025429 + MIR SINE MIR 2 172 -90 246 244 70 52 chr1 68638945 68639060 -174025293 + MIR SINE MIR 95 211 -51 180 313 0 0 chr1 68639326 68639374 -174024979 - L2 LINE L2 -3 3269 3222 1120 289 5 36 chr1 68639828 68640212 -174024141 - L2 LINE L2 0 3313 2942 396 0 0 0 chr1 68640270 68640314 -174024039 + (TG)n Simple_repeat Simple_repeat 2 45 0 254 280 153 83 chr1 68640446 68640635 -174023718 - L2 LINE L2 -649 2665 2446 2305 88 3 0 chr1 68640635 68640930 -174023423 + AluSx SINE Alu 4 299 -13 254 280 153 83 chr1 68640930 68641040 -174023313 - L2 LINE L2 -868 2446 2345 22 0 0 0 chr1 68641041 68641063 -174023290 + AT_rich Low_complexity Low_complexity 1 22 0 2177 127 3 0 chr1 68641091 68641391 -174022962 - AluSx SINE Alu -11 301 1 2229 123 7 0 chr1 68641547 68641857 -174022496 + AluSx SINE Alu 1 312 0 47 78 0 0 chr1 68641949 68642052 -174022301 + AT_rich Low_complexity Low_complexity 1 103 0 188 23 47 47 chr1 68642080 68642123 -174022230 + (TA)n Simple_repeat Simple_repeat 2 44 0 2237 134 0 0 chr1 68642134 68642433 -174021920 - AluSx SINE Alu -13 299 1 189 0 0 0 chr1 68642439 68642460 -174021893 + (TA)n Simple_repeat Simple_repeat 2 22 0 2308 98 3 0 chr1 68642463 68642759 -174021594 - AluSq SINE Alu -16 297 1 1066 75 8 0 chr1 68642759 68642893 -174021460 - AluSq/x SINE Alu -178 135 1 2035 135 3 0 chr1 68643114 68643434 -174020919 - AluSq SINE Alu 0 313 1 791 146 0 46 chr1 68643487 68643617 -174020736 + AluJb SINE Alu 2 125 -187 848 229 72 42 chr1 68643877 68643911 -174020442 + MLT1J2 LTR MaLR 1 33 -417 2069 97 4 22 chr1 68643911 68644189 -174020164 - AluSx SINE Alu -39 273 1 848 229 72 42 chr1 68644189 68644390 -174019963 + MLT1J2 LTR MaLR 33 243 -207 1581 156 26 7 chr1 68644903 68645172 -174019181 - AluJb SINE Alu -9 303 30 381 247 24 12 chr1 68645281 68645366 -174018987 - MLT1J2 LTR MaLR -330 120 35 1813 86 6 169 chr1 68645367 68645737 -174018616 + AluSp SINE Alu 2 316 0 1963 156 0 0 chr1 68645847 68646149 -174018204 + AluJb SINE Alu 1 302 -10 1446 169 73 11 chr1 68646952 68647224 -174017129 - AluJo SINE Alu -23 289 1 563 261 67 0 chr1 68647302 68647421 -174016932 - FLAM_A SINE Alu -6 127 1 399 217 118 59 chr1 68647551 68647703 -174016650 + MER46C DNA MER2_type 2 162 -176 23 0 0 0 chr1 68647726 68647749 -174016604 + AT_rich Low_complexity Low_complexity 1 23 0 1672 177 7 10 chr1 68647756 68648056 -174016297 + AluJb SINE Alu 1 299 -13 1667 167 59 3 chr1 68649034 68649321 -174015032 + AluJb SINE Alu 1 303 -9 222 37 0 0 chr1 68649323 68649350 -174015003 + (TA)n Simple_repeat Simple_repeat 1 27 0 435 83 0 0 chr1 68649350 68649410 -174014943 + (CA)n Simple_repeat Simple_repeat 2 61 0 1948 124 29 26 chr1 68649922 68650228 -174014125 + AluSq SINE Alu 1 307 -6 1613 126 96 4 chr1 68650253 68650514 -174013839 + AluJb SINE Alu 12 296 -16 753 151 59 0 chr1 68650780 68650899 -174013454 - FLAM_C SINE Alu -10 133 8 1249 171 43 5 chr1 68650926 68651137 -174013216 + MER20 DNA MER1_type 1 219 0 715 242 40 54 chr1 68651146 68651293 -174013060 - Charlie2 DNA MER1_type -1 2861 2718 1858 169 7 0 chr1 68651293 68651583 -174012770 - AluSx SINE Alu -20 292 1 715 242 40 54 chr1 68651583 68651732 -174012621 - Charlie2 DNA MER1_type -144 2718 2569 1885 132 35 7 chr1 68651770 68652058 -174012295 + AluSx SINE Alu 1 296 -16 1862 157 6 19 chr1 68652070 68652383 -174011970 + AluSx SINE Alu 1 309 -3 2906 10 0 0 chr1 68652754 68653068 -174011285 - AluYb8 SINE Alu -4 314 1 2113 102 3 0 chr1 68653138 68653421 -174010932 + AluSg SINE Alu 5 288 -22 1688 156 67 3 chr1 68653432 68653715 -174010638 - AluJb SINE Alu -11 301 1 301 296 96 9 chr1 68654050 68654165 -174010188 + MIR SINE MIR 20 144 -118 1917 127 65 0 chr1 68654209 68654543 -174009810 + AluSx SINE Alu 1 353 0 2599 55 0 13 chr1 68654618 68654930 -174009423 - AluY SINE Alu -3 308 1 1372 150 10 0 chr1 68654930 68655137 -174009216 + AluJo SINE Alu 67 275 -37 465 190 4 24 chr1 68655167 68655419 -174008934 + (TA)n Simple_repeat Simple_repeat 1 247 0 2265 66 0 63 chr1 68655892 68656209 -174008144 + AluY SINE Alu 1 297 -14 897 174 0 36 chr1 68656389 68656556 -174007797 - FRAM SINE Alu -8 168 8 1106 113 124 16 chr1 68656667 68656861 -174007492 + AluJb SINE Alu 87 301 -11 1452 181 103 3 chr1 68656862 68657144 -174007209 + AluJb SINE Alu 2 311 -1 254 149 21 0 chr1 68657258 68657305 -174007048 + LTR54 LTR ERV1 402 449 -61 1144 239 148 39 chr1 68657316 68657878 -174006475 + L1MC4 LINE L1 7199 7823 -214 1726 141 67 17 chr1 68657878 68658175 -174006178 - AluJb SINE Alu 0 312 1 216 0 0 0 chr1 68658235 68658259 -174006094 + (GA)n Simple_repeat Simple_repeat 2 25 0 341 126 0 228 chr1 68658260 68658313 -174006040 + L1MC4 LINE L1 7945 7954 -88 2279 101 3 10 chr1 68658313 68658620 -174005733 - AluSp SINE Alu -8 305 1 341 126 0 228 chr1 68658620 68658693 -174005660 + L1MC4 LINE L1 7954 8042 0 724 203 88 32 chr1 68658715 68658932 -174005421 + L1ME3A LINE L1 5942 6170 0 2230 113 0 0 chr1 68659064 68659365 -174004988 - AluSx SINE Alu -9 303 3 285 221 96 39 chr1 68659377 68659481 -174004872 + L2 LINE L2 3203 3312 -1 1826 154 6 38 chr1 68659764 68660082 -174004271 + AluJb SINE Alu 1 308 -4 2387 110 0 0 chr1 68660085 68660395 -174003958 + AluSx SINE Alu 1 310 -2 762 174 0 43 chr1 68660654 68660792 -174003561 + FLAM_C SINE Alu 2 133 0 1626 151 0 62 chr1 68660811 68661103 -174003250 + AluJb SINE Alu 1 274 -38 2158 107 0 0 chr1 68661212 68661492 -174002861 - AluSg SINE Alu -30 280 1 21 36 0 0 chr1 68662488 68662516 -174001837 + AT_rich Low_complexity Low_complexity 1 28 0 528 133 0 44 chr1 68662786 68662876 -174001477 + AluJo SINE Alu 49 134 -178 1787 112 0 12 chr1 68663021 68663280 -174001073 + AluSx SINE Alu 49 304 -8 195 338 52 13 chr1 68663439 68663516 -174000837 + L2 LINE L2 3191 3270 -2 731 234 27 11 chr1 68664851 68665035 -173999318 - MER5A DNA MER1_type -2 187 1 1984 129 7 10 chr1 68665059 68665353 -173999000 - AluSx SINE Alu -19 293 1 2134 106 7 0 chr1 68665427 68665720 -173998633 - AluSq SINE Alu -18 295 1 2003 112 7 7 chr1 68665797 68666082 -173998271 - AluSp SINE Alu -28 285 1 2332 70 3 3 chr1 68666086 68666372 -173997981 - AluSg SINE Alu -24 286 1 252 225 28 28 chr1 68666484 68666555 -173997798 + CT-rich Low_complexity Low_complexity 1 71 0 442 174 0 0 chr1 68666787 68666856 -173997497 + AluJ/FLAM SINE Alu 2 70 -242 1621 118 0 17 chr1 68666963 68667200 -173997153 + AluSc SINE Alu 1 233 -76 2010 113 26 0 chr1 68667225 68667527 -173996826 + AluSq SINE Alu 1 310 -3 2199 91 0 58 chr1 68667551 68667880 -173996473 + AluSg SINE Alu 1 310 0 2205 101 7 0 chr1 68667999 68668297 -173996056 + AluSp SINE Alu 1 300 -13 1112 180 131 85 chr1 68668299 68668480 -173995873 - LTR54B LTR ERV1 -2 496 325 1344 169 95 26 chr1 68668480 68668753 -173995600 + AluJo SINE Alu 1 292 -20 1112 180 131 85 chr1 68668753 68669043 -173995310 - LTR54B LTR ERV1 -173 325 3 7503 54 5 0 chr1 68669154 68670031 -173994322 + L1PA7 LINE L1 5264 6144 -10 788 124 0 0 chr1 68670049 68670162 -173994191 + AluSg/x SINE Alu 197 309 -3 181 225 0 0 chr1 68670173 68670213 -173994140 + L2 LINE L2 3273 3312 -1 35 24 0 0 chr1 68670390 68670432 -173993921 + AT_rich Low_complexity Low_complexity 1 42 0 1834 162 7 7 chr1 68670441 68670737 -173993616 - AluJo SINE Alu -15 297 2 180 0 0 0 chr1 68670927 68670947 -173993406 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1779 88 50 0 chr1 68670949 68671188 -173993165 - AluSq SINE Alu -32 281 31 1253 112 0 6 chr1 68671838 68672008 -173992345 - AluSg/x SINE Alu -11 301 133 189 94 0 0 chr1 68672008 68672040 -173992313 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1861 124 22 0 chr1 68672040 68672313 -173992040 - AluSg SINE Alu -31 279 1 183 139 0 0 chr1 68672626 68672662 -173991691 + (A)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr1 68672945 68672967 -173991386 + AT_rich Low_complexity Low_complexity 1 22 0 820 194 0 0 chr1 68672992 68673121 -173991232 - AluJb SINE Alu -22 290 162 2097 120 43 0 chr1 68673358 68673657 -173990696 - AluSq SINE Alu -1 312 1 486 280 148 0 chr1 68673657 68673846 -173990507 - MIR SINE MIR -15 247 31 607 184 20 0 chr1 68673903 68674001 -173990352 + AluSp/q SINE Alu 190 289 -24 1975 118 7 0 chr1 68674154 68674457 -173989896 + AluSx SINE Alu 1 305 0 399 191 14 85 chr1 68674497 68674638 -173989715 + MER65A LTR ERV1 267 397 -48 2705 141 62 41 chr1 68674641 68674849 -173989504 + LTR64 LTR ERVK 1 203 -355 2215 113 0 10 chr1 68674849 68675151 -173989202 + AluSx SINE Alu 5 303 -9 2705 141 62 41 chr1 68675151 68675430 -173988923 + LTR64 LTR ERVK 203 498 -60 2074 115 19 53 chr1 68675448 68675771 -173988582 - AluSx SINE Alu 0 312 1 1357 173 55 33 chr1 68675808 68676080 -173988273 - AluJo SINE Alu -30 282 5 436 48 48 0 chr1 68676088 68676151 -173988202 + LTR64 LTR ERVK 493 558 0 817 153 0 0 chr1 68676259 68676377 -173987976 + FLAM_C SINE Alu 1 118 -15 2119 120 0 0 chr1 68676397 68676726 -173987627 - AluSg SINE Alu 0 329 1 25 51 0 0 chr1 68676786 68676825 -173987528 + AT_rich Low_complexity Low_complexity 1 39 0 1664 156 0 60 chr1 68676867 68677169 -173987184 + AluJo SINE Alu 1 284 -28 2071 129 20 0 chr1 68677172 68677474 -173986879 - AluSx SINE Alu -4 308 1 2389 82 20 3 chr1 68677811 68678115 -173986238 + AluSq SINE Alu 1 309 -4 1873 109 69 7 chr1 68678265 68678541 -173985812 + AluSq SINE Alu 1 293 -20 955 162 47 0 chr1 68678543 68678691 -173985662 + AluJo/FRAM SINE Alu 136 290 -22 25 31 0 0 chr1 68678691 68678723 -173985630 + AT_rich Low_complexity Low_complexity 1 32 0 1178 184 111 62 chr1 68678728 68679016 -173985337 + AluJo SINE Alu 1 302 0 865 142 11 74 chr1 68679086 68679140 -173985213 - L1PA15 LINE L1 0 6165 6109 2216 96 10 3 chr1 68679140 68679442 -173984911 + AluSg SINE Alu 1 304 -6 865 142 11 74 chr1 68679442 68679563 -173984790 - L1PA15 LINE L1 -56 6109 6001 593 138 0 11 chr1 68679873 68679990 -173984363 - FLAM_A SINE Alu 0 138 23 204 67 0 0 chr1 68680025 68680055 -173984298 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1606 102 18 44 chr1 68680083 68680357 -173983996 - AluSx SINE Alu -45 267 1 29 84 0 0 chr1 68681267 68681338 -173983015 + GC_rich Low_complexity Low_complexity 1 71 0 24 85 0 0 chr1 68681761 68681820 -173982533 + GC_rich Low_complexity Low_complexity 1 59 0 1276 159 140 26 chr1 68682948 68683219 -173981134 + AluJb SINE Alu 1 302 0 189 0 0 0 chr1 68683231 68683252 -173981101 + (CTTAT)n Simple_repeat Simple_repeat 2 22 0 2534 178 189 42 chr1 68683534 68684173 -173980180 - MER21A LTR ERV1 -19 912 180 2194 113 3 14 chr1 68684175 68684488 -173979865 - AluSx SINE Alu 0 312 1 186 43 0 0 chr1 68684492 68684515 -173979838 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 2214 109 0 0 chr1 68684524 68684817 -173979536 - AluSx SINE Alu -18 294 2 1609 140 33 62 chr1 68684822 68685156 -173979197 - AluSx SINE Alu 0 312 1 687 148 9 0 chr1 68685167 68685282 -173979071 - FLAM_C SINE Alu -17 126 11 330 200 0 0 chr1 68685291 68685346 -173979007 - MER39 LTR ERV1 -394 313 259 * 1018 155 14 68 chr1 68685323 68685530 -173978823 - MER21A LTR ERV1 -735 196 1 391 169 131 31 chr1 68685638 68685768 -173978585 - L1ME4a LINE L1 -5 6116 5974 546 209 40 20 chr1 68686695 68686843 -173977510 + MER33 DNA MER1_type 14 164 -160 261 174 0 0 chr1 68686833 68686879 -173977474 - AluSg SINE Alu -8 294 249 * 1665 88 0 0 chr1 68686879 68687084 -173977269 - AluSg SINE Alu -96 214 10 2319 91 3 3 chr1 68687161 68687470 -173976883 - AluSx SINE Alu -3 309 1 640 192 55 7 chr1 68687627 68687773 -173976580 - AluJb SINE Alu -64 248 96 319 304 65 48 chr1 68687802 68687895 -173976458 - MIR SINE MIR 0 262 163 1855 89 43 98 chr1 68687895 68688220 -173976133 - AluSq SINE Alu -6 307 1 319 304 65 48 chr1 68688220 68688294 -173976059 - MIR SINE MIR -99 163 92 336 240 14 132 chr1 68688436 68688597 -173975756 + L1ME3A LINE L1 5711 5833 -337 1783 136 7 11 chr1 68688597 68688870 -173975483 - AluJb SINE Alu -18 294 23 336 240 14 132 chr1 68688870 68688966 -173975387 + L1ME3A LINE L1 5833 5939 -231 2010 108 10 23 chr1 68689350 68689656 -173974697 - AluSp SINE Alu -11 302 1 2199 117 3 7 chr1 68689907 68690214 -173974139 - AluSx SINE Alu -3 309 4 2055 157 0 0 chr1 68690460 68690772 -173973581 + AluSx SINE Alu 1 312 0 2200 129 3 0 chr1 68690773 68691076 -173973277 + AluSp SINE Alu 1 304 -9 2164 112 0 43 chr1 68691222 68691545 -173972808 - AluSg SINE Alu -1 309 1 21 0 0 0 chr1 68691553 68691574 -173972779 + AT_rich Low_complexity Low_complexity 1 21 0 2374 82 10 3 chr1 68692436 68692730 -173971623 - AluSx SINE Alu -16 296 1 204 102 34 51 chr1 68692777 68692836 -173971517 + A-rich Low_complexity Low_complexity 4 61 0 1268 168 8 68 chr1 68693330 68693580 -173970773 - AluJo SINE Alu -77 235 1 715 197 0 0 chr1 68693708 68693835 -173970518 + FLAM_A SINE Alu 12 138 -4 2289 75 0 33 chr1 68693936 68694242 -173970111 + AluY SINE Alu 1 296 -15 542 180 124 31 chr1 68694272 68694433 -173969920 + Charlie7 DNA MER1_type 2436 2611 -1 185 314 33 41 chr1 68694448 68694569 -173969784 + L2 LINE L2 2687 2806 -508 661 228 131 15 chr1 68694590 68694725 -173969628 - MER5C DNA MER1_type 0 324 206 2172 87 49 0 chr1 68694725 68695011 -173969342 - AluSq SINE Alu -13 300 1 661 228 131 15 chr1 68695011 68695134 -173969219 - MER5C DNA MER1_type -118 206 36 1113 161 0 21 chr1 68695251 68695443 -173968910 + MER5A DNA MER1_type 1 188 -1 2069 134 19 10 chr1 68695482 68695789 -173968564 - AluSg SINE Alu 0 310 1 1743 171 30 3 chr1 68695992 68696290 -173968063 - AluJo SINE Alu -6 306 1 1792 193 0 3 chr1 68696293 68696604 -173967749 - AluJb SINE Alu -2 310 1 22 0 0 0 chr1 68696610 68696632 -173967721 + AT_rich Low_complexity Low_complexity 1 22 0 700 195 0 8 chr1 68696741 68696869 -173967484 - FLAM_A SINE Alu -6 127 1 2258 112 7 0 chr1 68697262 68697565 -173966788 - AluSq SINE Alu -8 305 1 636 150 83 25 chr1 68697683 68697803 -173966550 - FRAM SINE Alu -9 167 41 1427 70 43 0 chr1 68698050 68698237 -173966116 - MER30 DNA MER1_type -35 195 1 2159 119 7 0 chr1 68698328 68698623 -173965730 - AluSx SINE Alu -13 299 3 230 294 76 11 chr1 68698658 68698750 -173965603 - L1ME LINE L1 -394 5727 5630 2167 124 16 0 chr1 68699522 68699829 -173964524 - AluSx SINE Alu 0 312 1 1888 158 17 0 chr1 68699894 68700191 -173964162 - AluJb SINE Alu -10 302 1 379 272 19 10 chr1 68700193 68700296 -173964057 - L1ME2 LINE L1 -58 6106 6003 1500 246 123 27 chr1 68700296 68700600 -173963753 - MER34 LTR ERV1 0 542 172 2060 134 0 13 chr1 68700600 68700905 -173963448 - AluJo SINE Alu -11 301 1 1500 246 123 27 chr1 68700905 68701087 -173963266 - MER34 LTR ERV1 -370 172 9 2057 208 58 21 chr1 68701132 68701667 -173962686 - L1ME2 LINE L1 -199 5965 5411 26 0 0 0 chr1 68701852 68701878 -173962475 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr1 68702121 68702145 -173962208 + AT_rich Low_complexity Low_complexity 1 24 0 1132 145 0 6 chr1 68702301 68702467 -173961886 + FRAM SINE Alu 1 163 -13 1689 184 10 3 chr1 68702580 68702873 -173961480 - AluJo SINE Alu -15 297 3 1022 73 0 0 chr1 68702952 68703075 -173961278 - AluY SINE Alu -188 123 1 1919 156 23 7 chr1 68703990 68704297 -173960056 - AluJo SINE Alu 0 312 1 1322 147 5 5 chr1 68704302 68704506 -173959847 - AluSg/x SINE Alu -9 301 98 570 253 99 6 chr1 68704626 68704808 -173959545 + MIR SINE MIR 63 261 -1 23 33 0 0 chr1 68705622 68705652 -173958701 + AT_rich Low_complexity Low_complexity 1 30 0 1929 124 0 0 chr1 68705731 68705996 -173958357 + AluSq SINE Alu 1 265 -48 27 29 0 0 chr1 68706084 68706118 -173958235 + AT_rich Low_complexity Low_complexity 1 34 0 1527 181 24 24 chr1 68706187 68706479 -173957874 + AluJo SINE Alu 9 300 -12 2341 93 13 0 chr1 68706589 68706891 -173957462 - AluSg SINE Alu -4 306 1 2504 42 0 3 chr1 68707108 68707422 -173956931 + AluY SINE Alu 1 313 0 2209 121 0 0 chr1 68707538 68707843 -173956510 + AluJb SINE Alu 1 305 -7 404 340 33 7 chr1 68708515 68708668 -173955685 - MIR SINE MIR -85 177 21 243 333 82 29 chr1 68708683 68708854 -173955499 - L3 LINE CR1 -493 1084 905 448 317 62 0 chr1 68709319 68709480 -173954873 + MIR SINE MIR 86 256 -6 1504 168 119 8 chr1 68709580 68709848 -173954505 + AluJb SINE Alu 1 298 -4 23 0 0 0 chr1 68710214 68710237 -173954116 + AT_rich Low_complexity Low_complexity 1 23 0 2317 101 0 7 chr1 68710637 68710943 -173953410 - AluSq SINE Alu -9 304 1 349 349 115 5 chr1 68711638 68711856 -173952497 + MIR SINE MIR 20 261 -1 2175 100 3 10 chr1 68711953 68712243 -173952110 - AluSg SINE Alu -22 288 1 1625 154 22 58 chr1 68712311 68712426 -173951927 + AluJo SINE Alu 5 123 -189 2369 107 10 0 chr1 68712426 68712735 -173951618 + AluSx SINE Alu 1 312 0 1625 154 22 58 chr1 68712735 68712760 -173951593 + AluJo SINE Alu 123 147 -165 2558 72 0 0 chr1 68712760 68713065 -173951288 + AluY SINE Alu 1 305 -6 1625 154 22 58 chr1 68713065 68713235 -173951118 + AluJo SINE Alu 147 305 -7 197 204 23 0 chr1 68713773 68713817 -173950536 - L2 LINE L2 -13 3259 3215 191 262 56 19 chr1 68713900 68714007 -173950346 + L2 LINE L2 3159 3269 -44 2431 203 24 108 chr1 68715133 68715652 -173948701 + Charlie1a DNA MER1_type 1 435 -2326 2446 78 0 0 chr1 68715652 68715948 -173948405 - AluY SINE Alu -15 296 1 2431 203 24 108 chr1 68715948 68716206 -173948147 + Charlie1a DNA MER1_type 435 713 -742 1522 128 139 15 chr1 68716206 68716472 -173947881 + AluJb SINE Alu 1 299 -13 1022 73 0 0 chr1 68716934 68717057 -173947296 + AluY SINE Alu 1 123 -188 1485 175 42 11 chr1 68717136 68717422 -173946931 + AluJo SINE Alu 3 297 -15 1141 144 0 6 chr1 68717535 68717702 -173946651 - FRAM SINE Alu -12 164 1 24 0 0 0 chr1 68717858 68717882 -173946471 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr1 68718125 68718151 -173946202 + AT_rich Low_complexity Low_complexity 1 26 0 2057 208 58 21 chr1 68718336 68718871 -173945482 + L1ME2 LINE L1 5411 5965 -199 1500 246 123 27 chr1 68718916 68719098 -173945255 + MER34 LTR ERV1 9 172 -370 2054 134 0 13 chr1 68719098 68719403 -173944950 + AluJo SINE Alu 1 301 -11 1500 246 123 27 chr1 68719403 68719707 -173944646 + MER34 LTR ERV1 172 542 0 379 272 19 10 chr1 68719707 68719810 -173944543 + L1ME2 LINE L1 6003 6106 -58 1888 158 17 0 chr1 68719812 68720109 -173944244 + AluJb SINE Alu 1 302 -10 2168 114 16 7 chr1 68720174 68720482 -173943871 + AluSx SINE Alu 1 311 -1 1089 170 26 0 chr1 68720483 68720506 -173943847 + AluJo SINE Alu 107 128 -184 2558 72 0 0 chr1 68720506 68720811 -173943542 + AluY SINE Alu 1 305 -6 1089 170 26 0 chr1 68720811 68720981 -173943372 + AluJo SINE Alu 128 305 -7 197 204 23 0 chr1 68721519 68721563 -173942790 - L2 LINE L2 -13 3259 3215 191 262 56 19 chr1 68721646 68721753 -173942600 + L2 LINE L2 3159 3269 -44 4515 175 46 122 chr1 68722879 68723397 -173940956 + Charlie1a DNA MER1_type 1 557 -2204 2446 78 0 0 chr1 68723397 68723693 -173940660 - AluY SINE Alu -15 296 1 4515 175 46 122 chr1 68723693 68723951 -173940402 + Charlie1a DNA MER1_type 557 833 -1928 1613 132 129 14 chr1 68723951 68724231 -173940122 + AluJb SINE Alu 1 312 0 4515 175 46 122 chr1 68724231 68724378 -173939975 + Charlie1a DNA MER1_type 833 990 -1771 1884 142 9 28 chr1 68724378 68724556 -173939797 - AluJo SINE Alu 0 312 141 2015 152 0 0 chr1 68724556 68724858 -173939495 - AluJb SINE Alu -7 305 4 1884 142 9 28 chr1 68724858 68724997 -173939356 - AluJo SINE Alu -171 141 1 4515 175 46 122 chr1 68724997 68725400 -173938953 + Charlie1a DNA MER1_type 990 1422 -1339 2096 133 0 0 chr1 68725400 68725679 -173938674 - AluSg SINE Alu -30 280 2 4515 175 46 122 chr1 68725679 68725710 -173938643 + Charlie1a DNA MER1_type 1422 1327 -1434 34 79 0 0 chr1 68725710 68725786 -173938567 + AT_rich Low_complexity Low_complexity 1 76 0 4515 175 46 122 chr1 68725786 68725803 -173938550 + Charlie1a DNA MER1_type 1326 1343 -112 2276 181 35 29 chr1 68725835 68726287 -173938066 - MLT2C2 LTR ERVL -9 455 1 250 267 18 0 chr1 68726289 68726370 -173937983 - L1MA10 LINE L1 -93 6232 5989 297 100 0 100 chr1 68726370 68726403 -173937950 + Charlie1a DNA MER1_type 1396 1422 -1339 1668 173 97 27 chr1 68726403 68726807 -173937546 - MSTB1 LTR MaLR 0 432 1 297 100 0 100 chr1 68726807 68726833 -173937520 + Charlie1a DNA MER1_type 1422 1449 -6 2224 112 0 3 chr1 68726866 68727171 -173937182 + AluSx SINE Alu 1 304 -8 424 236 36 0 chr1 68727405 68727515 -173936838 + MER103 DNA DNA 36 149 -17 409 281 172 21 chr1 68727654 68727846 -173936507 - MIR SINE MIR -21 241 21 182 298 202 26 chr1 68728276 68728390 -173935963 + MIR SINE MIR 8 141 -121 2399 197 64 8 chr1 68728391 68728909 -173935444 - MER68 LTR ERV1 -10 552 6 219 234 39 52 chr1 68728926 68729003 -173935350 + MIR SINE MIR 149 224 -38 354 350 7 39 chr1 68729044 68729197 -173935156 - MIR SINE MIR -63 145 2 22 35 0 0 chr1 68729228 68729257 -173935096 + AT_rich Low_complexity Low_complexity 1 29 0 847 178 73 31 chr1 68730089 68730280 -173934073 - AluJo SINE Alu -2 310 112 24 0 0 0 chr1 68730325 68730349 -173934004 + AT_rich Low_complexity Low_complexity 1 24 0 1479 129 18 0 chr1 68730421 68730638 -173933715 - AluSx SINE Alu -10 300 80 519 49 0 0 chr1 68730681 68730742 -173933611 - AluSx SINE Alu -234 79 19 21 0 0 0 chr1 68731329 68731350 -173933003 + AT_rich Low_complexity Low_complexity 1 21 0 312 304 11 11 chr1 68732115 68732207 -173932146 + MIR SINE MIR 47 138 -124 229 254 0 15 chr1 68732552 68732619 -173931734 + AluJo SINE Alu 80 145 -157 2176 127 0 0 chr1 68732692 68732992 -173931361 - AluSx SINE Alu -6 306 7 205 222 0 0 chr1 68732995 68733040 -173931313 + L2 LINE L2 2193 2237 -1077 1908 251 104 30 chr1 68733085 68733386 -173930967 + L2 LINE L2 2231 2508 -806 2179 88 15 0 chr1 68733386 68733658 -173930695 + AluSg SINE Alu 1 276 -34 180 0 0 0 chr1 68733661 68733681 -173930672 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 222 37 0 0 chr1 68733683 68733710 -173930643 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 1908 251 104 30 chr1 68733710 68734038 -173930315 + L2 LINE L2 2509 2914 -400 184 308 19 0 chr1 68734833 68734885 -173929468 + MIR SINE MIR 94 146 -62 42 48 0 0 chr1 68735021 68735084 -173929269 + AT_rich Low_complexity Low_complexity 1 63 0 341 325 108 18 chr1 68735106 68735272 -173929081 - MIR SINE MIR -71 191 11 2266 90 3 7 chr1 68735324 68735640 -173928713 - AluSp SINE Alu 0 313 11 210 222 0 69 chr1 68735678 68735703 -173928650 + A-rich Low_complexity Low_complexity 4 29 -41 1933 157 16 0 chr1 68735703 68736009 -173928344 + AluSx SINE Alu 1 311 -1 210 222 0 69 chr1 68736009 68736055 -173928298 + A-rich Low_complexity Low_complexity 29 70 0 2085 126 3 0 chr1 68736207 68736501 -173927852 + AluSx SINE Alu 1 295 -17 1015 188 0 0 chr1 68736734 68736899 -173927454 + FRAM SINE Alu 2 166 0 1616 186 75 85 chr1 68737033 68737179 -173927174 - MLT1E2 LTR MaLR 0 626 480 2358 107 0 0 chr1 68737179 68737489 -173926864 - AluSx SINE Alu -2 310 1 1616 186 75 85 chr1 68737489 68737837 -173926516 - MLT1E2 LTR MaLR -146 480 137 2237 104 7 0 chr1 68739197 68739505 -173924848 - AluSx SINE Alu -2 310 1 21 0 0 0 chr1 68739728 68739749 -173924604 + AT_rich Low_complexity Low_complexity 1 21 0 932 136 0 7 chr1 68739751 68739898 -173924455 - AluSg/x SINE Alu -15 297 152 1703 125 89 25 chr1 68740134 68740415 -173923938 + AluJb SINE Alu 1 299 -13 432 302 123 33 chr1 68740830 68741042 -173923311 - MIR SINE MIR -28 234 4 2019 110 3 29 chr1 68741052 68741360 -173922993 - AluSx SINE Alu -12 300 1 329 289 16 30 chr1 68741361 68741510 -173922843 - MIR SINE MIR -62 146 5 783 126 0 8 chr1 68741540 68741659 -173922694 + AluJb SINE Alu 1 118 -194 272 105 0 0 chr1 68741721 68741759 -173922594 - L1PA8 LINE L1 -90 6082 6045 2362 92 0 3 chr1 68741982 68742288 -173922065 + AluSp SINE Alu 1 305 -8 330 87 0 0 chr1 68742324 68742370 -173921983 + (GA)n Simple_repeat Simple_repeat 1 46 0 1931 152 68 68 chr1 68743154 68743340 -173921013 + MSTA LTR MaLR 1 186 -242 2085 142 3 0 chr1 68743340 68743636 -173920717 + AluSx SINE Alu 1 297 -15 1931 152 68 68 chr1 68743636 68743877 -173920476 + MSTA LTR MaLR 185 428 0 234 323 42 10 chr1 68743965 68744061 -173920292 - MIR3 SINE MIR -3 205 107 470 321 47 53 chr1 68744088 68744278 -173920075 + MER5A DNA MER1_type 1 189 0 689 274 30 5 chr1 68744414 68744611 -173919742 + MIR SINE MIR 4 205 -57 23 0 0 0 chr1 68744849 68744872 -173919481 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr1 68744944 68744967 -173919386 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2183 116 20 0 chr1 68744988 68745281 -173919072 + AluSq SINE Alu 1 299 -14 213 39 0 0 chr1 68745382 68745408 -173918945 + (A)n Simple_repeat Simple_repeat 1 26 0 315 0 0 0 chr1 68746941 68746976 -173917377 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 727 183 11 11 chr1 68746976 68747151 -173917202 + CT-rich Low_complexity Low_complexity 2 176 0 1988 107 0 25 chr1 68747152 68747432 -173916921 - AluSx SINE Alu -39 273 1 2024 135 7 10 chr1 68748068 68748364 -173915989 - AluSx SINE Alu -17 295 1 1720 162 7 17 chr1 68748460 68748757 -173915596 - AluJb SINE Alu -18 294 1 1770 148 31 7 chr1 68748868 68749159 -173915194 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr1 68749424 68749453 -173914900 + AT_rich Low_complexity Low_complexity 1 29 0 2285 92 3 3 chr1 68749455 68749747 -173914606 - AluSg SINE Alu -17 293 2 28 29 0 0 chr1 68749778 68749813 -173914540 + AT_rich Low_complexity Low_complexity 1 35 0 4055 159 35 55 chr1 68749813 68750829 -173913524 - L1PB4 LINE L1 -4 6152 5158 5776 63 3 5 chr1 68750831 68751611 -173912742 - L1PA5 LINE L1 0 6154 5377 26 0 0 0 chr1 68751843 68751869 -173912484 + AT_rich Low_complexity Low_complexity 1 26 0 1276 81 0 0 chr1 68752429 68752602 -173911751 - L1PA5 LINE L1 0 6154 5982 2184 106 3 0 chr1 68752602 68752885 -173911468 - AluSq SINE Alu -29 284 1 28 0 0 0 chr1 68752919 68752947 -173911406 + AT_rich Low_complexity Low_complexity 1 28 0 840 140 0 0 chr1 68752947 68753061 -173911292 - FLAM_C SINE Alu -19 124 11 24 0 0 0 chr1 68753151 68753175 -173911178 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr1 68753770 68753813 -173910540 + AT_rich Low_complexity Low_complexity 1 43 0 391 254 113 49 chr1 68753999 68754184 -173910169 + L1MC/D LINE L1 5308 5504 -2304 2529 54 0 0 chr1 68756830 68757128 -173907225 + AluY SINE Alu 1 298 -13 1944 128 11 0 chr1 68757362 68757679 -173906674 + AluSq SINE Alu 1 320 0 1710 167 7 0 chr1 68757679 68757960 -173906393 - AluJo SINE Alu -21 291 9 21 57 0 0 chr1 68757987 68758022 -173906331 + AT_rich Low_complexity Low_complexity 1 35 0 763 185 8 0 chr1 68759052 68759182 -173905171 - FLAM_C SINE Alu -2 131 1 2372 89 3 0 chr1 68759875 68760179 -173904174 - AluSp SINE Alu -8 305 1 2281 99 3 13 chr1 68760330 68760642 -173903711 - AluSx SINE Alu -3 309 1 2182 106 0 0 chr1 68760909 68761235 -173903118 + AluSg SINE Alu 1 326 0 1393 96 0 11 chr1 68761235 68761422 -173902931 + AluSq SINE Alu 108 292 -21 580 275 114 14 chr1 68761456 68761667 -173902686 + MIR SINE MIR 2 233 -29 2118 109 21 3 chr1 68761728 68762012 -173902341 - AluSq SINE Alu -24 289 1 24 32 0 0 chr1 68762018 68762049 -173902304 + AT_rich Low_complexity Low_complexity 1 31 0 411 320 70 35 chr1 68762093 68762268 -173902085 - L1M4 LINE L1 -5107 1435 1268 2565 38 0 0 chr1 68762268 68762559 -173901794 + AluY SINE Alu 1 291 -20 411 320 70 35 chr1 68762559 68762724 -173901629 - L1M4 LINE L1 -5274 1268 1083 453 84 0 0 chr1 68762843 68762914 -173901439 + (GA)n Simple_repeat Simple_repeat 2 72 0 513 0 0 0 chr1 68762914 68762971 -173901382 + (TG)n Simple_repeat Simple_repeat 1 57 0 2154 131 0 0 chr1 68763069 68763366 -173900987 + AluSx SINE Alu 1 297 -15 225 226 0 0 chr1 68763831 68763884 -173900469 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 806 230 102 36 chr1 68763981 68764255 -173900098 - L2 LINE L2 -1 3312 3021 2285 92 3 25 chr1 68764596 68764911 -173899442 - AluSx SINE Alu -4 308 1 315 0 0 0 chr1 68764988 68765023 -173899330 + (TG)n Simple_repeat Simple_repeat 1 35 0 675 157 26 0 chr1 68765251 68765366 -173898987 + FLAM_C SINE Alu 3 120 -23 352 330 17 34 chr1 68765922 68766101 -173898252 - MIR SINE MIR -36 226 51 705 73 31 0 chr1 68766104 68766200 -173898153 + U6 snRNA snRNA 2 100 -7 30 0 0 0 chr1 68766204 68766234 -173898119 + AT_rich Low_complexity Low_complexity 1 30 0 231 297 34 68 chr1 68766526 68766644 -173897709 - MER5B DNA MER1_type -17 161 48 187 328 114 15 chr1 68766731 68766862 -173897491 - L2 LINE L2 -216 3056 2913 2249 109 10 0 chr1 68767066 68767369 -173896984 + AluSq SINE Alu 1 306 -7 193 280 108 54 chr1 68768799 68768892 -173895461 + L2 LINE L2 2988 3085 -187 360 306 112 8 chr1 68769084 68769218 -173895135 + L2 LINE L2 3158 3305 -8 591 212 0 0 chr1 68769324 68769442 -173894911 + MER63 DNA MER1_type 679 796 -266 750 148 53 133 chr1 68769595 68769730 -173894623 + MER63 DNA MER1_type 818 962 -98 1974 126 14 7 chr1 68769730 68770024 -173894329 - AluSx SINE Alu -16 296 1 198 0 0 0 chr1 68770024 68770046 -173894307 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2163 110 3 0 chr1 68770046 68770328 -173894025 - AluSp SINE Alu -30 283 1 750 148 53 133 chr1 68770328 68770454 -173893899 + MER63 DNA MER1_type 959 1060 0 2287 70 3 17 chr1 68770730 68771030 -173893323 - AluY SINE Alu -15 296 1 241 315 178 47 chr1 68771781 68771898 -173892455 - L2 LINE L2 -4 3268 3168 1486 110 29 45 chr1 68771898 68772144 -173892209 + AluSc SINE Alu 68 309 0 241 315 178 47 chr1 68772144 68772302 -173892051 - L2 LINE L2 -104 3168 2957 376 289 25 31 chr1 68773468 68773627 -173890726 + MER117 DNA MER1_type 1 158 -39 915 138 0 0 chr1 68773922 68774052 -173890301 - FLAM_C SINE Alu -3 130 1 377 116 0 116 chr1 68774060 68774109 -173890244 - L1MB4 LINE L1 0 6180 6146 1912 171 3 0 chr1 68774109 68774414 -173889939 - AluJo SINE Alu -6 306 1 377 116 0 116 chr1 68774414 68774459 -173889894 - L1MB4 LINE L1 -34 6146 6097 351 277 149 39 chr1 68774671 68774849 -173889504 + MIR3 SINE MIR 11 206 -56 180 0 0 0 chr1 68775192 68775212 -173889141 + (TG)n Simple_repeat Simple_repeat 2 21 0 27 49 0 0 chr1 68776419 68776460 -173887893 + AT_rich Low_complexity Low_complexity 1 41 0 2243 87 17 3 chr1 68777649 68777947 -173886406 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr1 68778042 68778063 -173886290 + AT_rich Low_complexity Low_complexity 1 21 0 1605 170 45 17 chr1 68778086 68778374 -173885979 - AluJo SINE Alu -16 296 1 482 304 62 21 chr1 68778539 68778733 -173885620 + MIR SINE MIR 57 258 -4 198 370 42 34 chr1 68778836 68778955 -173885398 + L2 LINE L2 3139 3258 -14 5895 113 17 3 chr1 68779792 68780596 -173883757 + L1PA15 LINE L1 4238 5030 -1135 2289 98 3 3 chr1 68780596 68780901 -173883452 + AluY SINE Alu 1 305 -6 5895 113 17 3 chr1 68780901 68782034 -173882319 + L1PA15 LINE L1 5030 6164 -1 27 0 0 0 chr1 68782037 68782064 -173882289 + AT_rich Low_complexity Low_complexity 1 27 0 321 236 130 49 chr1 68782286 68782409 -173881944 - L2 LINE L2 -1 3312 3180 1029 134 10 21 chr1 68783762 68783956 -173880397 - L1MB7 LINE L1 -12 6172 5981 1879 141 50 0 chr1 68784433 68784716 -173879637 - AluSx SINE Alu -13 299 3 217 326 126 0 chr1 68784911 68785046 -173879307 + L2 LINE L2 3162 3313 0 2019 131 0 0 chr1 68785080 68785393 -173878960 - AluSx SINE Alu 0 313 1 22 35 0 0 chr1 68785937 68785966 -173878387 + AT_rich Low_complexity Low_complexity 1 29 0 204 216 72 72 chr1 68786769 68786880 -173877473 + MIR SINE MIR 97 207 -55 2156 124 3 3 chr1 68787198 68787497 -173876856 + AluSx SINE Alu 3 301 -11 374 256 125 59 chr1 68788393 68788682 -173875671 - L1MC4a LINE L1 -1926 5882 5575 209 194 0 0 chr1 68790601 68790637 -173873716 + A-rich Low_complexity Low_complexity 4 39 0 1739 133 75 4 chr1 68791310 68791588 -173872765 + AluJo SINE Alu 1 298 -14 574 237 59 7 chr1 68791790 68791942 -173872411 - L2 LINE L2 -12 3301 3142 1633 155 76 19 chr1 68792308 68792507 -173871846 + MER44D DNA MER2_type 5 191 -2300 1839 135 62 49 chr1 68792507 68792877 -173871476 + THE1C LTR MaLR 1 375 0 1633 155 76 19 chr1 68792877 68792994 -173871359 + MER44D DNA MER2_type 191 609 0 559 278 53 12 chr1 68792994 68793163 -173871190 - MIR SINE MIR -27 235 60 28 0 0 0 chr1 68793384 68793412 -173870941 + AT_rich Low_complexity Low_complexity 1 28 0 206 174 22 0 chr1 68793941 68793987 -173870366 + (TAA)n Simple_repeat Simple_repeat 3 49 0 307 313 37 8 chr1 68794034 68794168 -173870185 - MIR SINE MIR -50 212 75 448 115 26 0 chr1 68794361 68794439 -173869914 - L1MB2 LINE L1 -14 6157 6078 2133 114 0 7 chr1 68794452 68794751 -173869602 - AluSx SINE Alu -15 297 1 409 300 71 35 chr1 68795966 68796136 -173868217 - MIR3 SINE MIR -9 199 24 21 0 0 0 chr1 68796422 68796443 -173867910 + AT_rich Low_complexity Low_complexity 1 21 0 650 152 98 0 chr1 68796444 68796556 -173867797 - FLAM_C SINE Alu -10 123 1 1776 161 17 7 chr1 68797164 68797456 -173866897 + AluJb SINE Alu 1 295 -17 921 238 53 25 chr1 68798504 68798748 -173865605 + MIR SINE MIR 2 252 -10 346 270 63 58 chr1 68798841 68799030 -173865323 - L2 LINE L2 -6 3307 3118 417 366 41 22 chr1 68799433 68799747 -173864606 - L2 LINE L2 -528 2786 2467 1039 167 23 0 chr1 68799782 68799956 -173864397 + AluSx SINE Alu 41 218 -94 592 183 29 0 chr1 68800345 68800449 -173863904 + U6 snRNA snRNA 1 107 0 24 0 0 0 chr1 68801179 68801203 -173863150 + AT_rich Low_complexity Low_complexity 1 24 0 763 250 98 9 chr1 68802407 68802631 -173861722 + MIR SINE MIR 14 257 -5 21 36 0 0 chr1 68802843 68802871 -173861482 + AT_rich Low_complexity Low_complexity 1 28 0 1591 166 13 54 chr1 68803246 68803560 -173860793 - AluJb SINE Alu -11 301 1 600 238 25 16 chr1 68803585 68803707 -173860646 - FLAM_A SINE Alu -10 123 1 499 306 126 9 chr1 68804121 68804343 -173860010 + MIR SINE MIR 6 253 -9 25 0 0 0 chr1 68804430 68804455 -173859898 + AT_rich Low_complexity Low_complexity 1 25 0 1859 141 3 14 chr1 68804455 68804739 -173859614 - AluSx SINE Alu -31 281 1 1420 184 19 12 chr1 68805201 68805457 -173858896 - AluJb SINE Alu -54 258 1 195 42 0 0 chr1 68805463 68805487 -173858866 + (TA)n Simple_repeat Simple_repeat 1 24 0 2235 102 7 0 chr1 68805500 68805793 -173858560 - AluSx SINE Alu -17 295 1 1838 163 7 0 chr1 68806324 68806631 -173857722 - AluJo SINE Alu -3 309 1 24 0 0 0 chr1 68806925 68806949 -173857404 + AT_rich Low_complexity Low_complexity 1 24 0 207 162 0 0 chr1 68808458 68808495 -173855858 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 1693 144 0 83 chr1 68808499 68808838 -173855515 - AluJb SINE Alu 0 312 2 22 35 0 0 chr1 68808949 68808978 -173855375 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 68809712 68809736 -173854617 + AT_rich Low_complexity Low_complexity 1 24 0 1544 167 144 4 chr1 68860318 68860582 -173803771 + AluJo SINE Alu 1 301 -1 2352 97 7 0 chr1 68860773 68861082 -173803271 + AluSp SINE Alu 1 311 -2 2030 134 70 31 chr1 68861160 68861519 -173802834 + THE1C LTR MaLR 1 373 -2 10743 122 9 35 chr1 68861520 68862816 -173801537 + THE1C-int LTR MaLR 4 1250 -330 2058 126 10 0 chr1 68862816 68863109 -173801244 + AluSx SINE Alu 1 296 -16 10743 122 9 35 chr1 68863109 68863432 -173800921 + THE1C-int LTR MaLR 1250 1580 0 1820 144 88 28 chr1 68863432 68863786 -173800567 + THE1C LTR MaLR 1 375 0 689 290 38 81 chr1 68864151 68864648 -173799705 - MLT1J LTR MaLR -33 478 3 198 151 68 110 chr1 68864965 68865038 -173799315 + MIR SINE MIR 101 170 -92 1863 162 10 0 chr1 68865047 68865337 -173799016 - AluJo SINE Alu -19 293 1 207 306 16 16 chr1 68865430 68865492 -173798861 - MIR SINE MIR -111 97 36 1214 177 20 0 chr1 68865589 68865787 -173798566 - AluJb SINE Alu -15 297 96 2471 36 0 0 chr1 68867379 68867688 -173796665 - AluY SINE Alu 0 309 1 26 30 0 0 chr1 68867958 68867991 -173796362 + AT_rich Low_complexity Low_complexity 1 33 0 1945 137 17 3 chr1 68868740 68869039 -173795314 + AluSx SINE Alu 1 303 -9 263 294 72 26 chr1 68869229 68869382 -173794971 + MIR SINE MIR 49 208 -54 1595 274 150 18 chr1 68869454 68870313 -173794040 - L2 LINE L2 -68 3245 2268 532 286 154 55 chr1 68870364 68870575 -173793778 - L1M4 LINE L1 -3602 2544 2291 2334 95 0 3 chr1 68870575 68870871 -173793482 - AluSx SINE Alu -15 297 3 532 286 154 55 chr1 68870871 68870970 -173793383 - L1M4 LINE L1 -3855 2291 2203 1122 293 13 0 chr1 68871077 68871381 -173792972 - L1MD2 LINE L1 -20 6339 6032 1003 124 33 0 chr1 68871382 68871535 -173792818 - THE1C LTR MaLR 0 375 218 808 229 21 5 chr1 68871545 68871737 -173792616 - L1MD2 LINE L1 -346 6013 5819 803 156 16 0 chr1 68871741 68871863 -173792490 + FLAM_C SINE Alu 2 125 -18 1721 161 65 29 chr1 68871907 68872248 -173792105 - MLT1A1 LTR MaLR -12 353 1 1476 198 38 14 chr1 68872248 68872536 -173791817 - L1MD2 LINE L1 -554 5805 5511 1919 201 170 66 chr1 68872537 68873334 -173791019 - MER21B LTR ERV1 -12 919 40 1291 306 149 23 chr1 68873376 68873684 -173790669 + L2 LINE L2 980 1248 -2066 2684 99 44 8 chr1 68873684 68874046 -173790307 + THE1C LTR MaLR 1 375 0 1291 306 149 23 chr1 68874046 68874470 -173789883 + L2 LINE L2 1248 1804 -1510 232 323 92 8 chr1 68875481 68875611 -173788742 + MIR SINE MIR 1 141 -121 2212 128 0 0 chr1 68875775 68876079 -173788274 - AluSx SINE Alu -8 304 1 328 158 109 79 chr1 68876168 68876269 -173788084 - Charlie8 DNA MER1_type -314 2103 2000 1145 196 14 0 chr1 68876269 68876483 -173787870 - AluJo SINE Alu -9 303 87 2983 248 85 48 chr1 68876708 68877336 -173787017 - Charlie8 DNA MER1_type -527 1890 1212 1777 182 7 3 chr1 68877336 68877644 -173786709 - AluJb SINE Alu -1 311 3 2983 248 85 48 chr1 68877644 68877963 -173786390 - Charlie8 DNA MER1_type -1205 1212 907 2024 94 65 7 chr1 68877994 68878294 -173786059 - AluSg SINE Alu 0 310 1 263 48 0 24 chr1 68878485 68878527 -173785826 + (TA)n Simple_repeat Simple_repeat 1 41 0 36 0 0 0 chr1 68878798 68878834 -173785519 + AT_rich Low_complexity Low_complexity 1 36 0 299 268 141 52 chr1 68878839 68879108 -173785245 - Charlie8 DNA MER1_type -1809 608 316 1861 141 7 31 chr1 68879111 68879402 -173784951 + AluSx SINE Alu 1 284 -28 200 159 0 23 chr1 68879419 68879463 -173784890 + GA-rich Low_complexity Low_complexity 1 43 0 1467 189 94 7 chr1 68880179 68880465 -173783888 - AluJo SINE Alu -1 311 1 321 356 83 0 chr1 68880563 68880695 -173783658 - L2 LINE L2 -1 3271 3129 2240 118 0 0 chr1 68881131 68881435 -173782918 + AluSq SINE Alu 1 304 -9 221 0 35 0 chr1 68881652 68881681 -173782672 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 230 347 80 24 chr1 68881869 68882082 -173782271 + L2 LINE L2 2868 3092 -180 600 299 63 19 chr1 68882273 68882641 -173781712 - L1M4 LINE L1 -1311 4835 4436 2255 116 0 6 chr1 68882641 68882952 -173781401 - AluSc SINE Alu 0 309 1 600 299 63 19 chr1 68882952 68883108 -173781245 - L1M4 LINE L1 -1710 4436 4288 323 241 44 76 chr1 68883135 68883293 -173781060 - L1ME4a LINE L1 -46 6075 5923 975 265 77 83 chr1 68883320 68883574 -173780779 - L1M4 LINE L1 -1892 4254 4000 2836 192 18 82 chr1 68883574 68884313 -173780040 - LTR8 LTR ERV1 0 691 1 975 265 77 83 chr1 68884313 68884729 -173779624 - L1M4 LINE L1 -2146 4000 3583 2428 100 0 0 chr1 68884729 68885039 -173779314 + AluSg SINE Alu 1 310 0 975 265 77 83 chr1 68885039 68885262 -173779091 - L1M4 LINE L1 -2563 3583 3360 2034 124 10 13 chr1 68885262 68885568 -173778785 - AluSx SINE Alu -7 305 1 975 265 77 83 chr1 68885568 68885638 -173778715 - L1M4 LINE L1 -2786 3360 3291 1834 151 19 19 chr1 68885638 68885950 -173778403 + AluJb SINE Alu 1 312 0 975 265 77 83 chr1 68885950 68886259 -173778094 - L1M4 LINE L1 -2855 3291 2982 1601 195 30 7 chr1 68886259 68886562 -173777791 - AluJb SINE Alu -2 310 1 975 265 77 83 chr1 68886562 68887152 -173777201 - L1M4 LINE L1 -3164 2982 2400 1865 122 113 27 chr1 68887193 68887528 -173776825 + THE1B LTR MaLR 1 364 0 2389 92 7 0 chr1 68887657 68887963 -173776390 - AluSx SINE Alu -4 308 1 452 236 145 62 chr1 68888648 68888890 -173775463 + L1ME1 LINE L1 5898 6159 -7 217 232 0 36 chr1 68888909 68888965 -173775388 - L2 LINE L2 -81 3232 3179 2083 151 3 6 chr1 68888990 68889301 -173775052 - AluSx SINE Alu -2 310 1 481 202 128 0 chr1 68889370 68889479 -173774874 + L2 LINE L2 3190 3312 -1 259 322 0 22 chr1 68889737 68889827 -173774526 - L2 LINE L2 -7 3306 3219 2226 108 0 13 chr1 68890593 68890898 -173773455 + AluSq SINE Alu 1 301 -12 2181 122 10 0 chr1 68891046 68891341 -173773012 + AluSx SINE Alu 1 298 -14 2587 20 40 0 chr1 68891888 68892226 -173772127 + AluY SINE Alu 1 350 0 910 184 38 26 chr1 68892639 68892906 -173771447 - LTR37B LTR ERV1 -2 466 197 269 243 14 14 chr1 68893032 68893102 -173771251 - L2 LINE L2 -1 3312 3243 694 166 21 0 chr1 68895323 68895468 -173768885 + L1MB7 LINE L1 6012 6159 -25 451 254 236 0 chr1 68895527 68895692 -173768661 + MIR SINE MIR 49 252 -10 42 77 0 0 chr1 68895708 68895799 -173768554 + AT_rich Low_complexity Low_complexity 1 91 0 558 268 25 61 chr1 68896250 68896448 -173767905 + MIR SINE MIR 52 242 -20 632 280 143 16 chr1 68896450 68896639 -173767714 - MIR SINE MIR -24 238 26 922 106 16 0 chr1 68896695 68896818 -173767535 + AluSq/x SINE Alu 1 125 -188 1225 168 180 25 chr1 68897542 68897665 -173766688 - AluJo SINE Alu -24 288 185 2116 98 27 10 chr1 68897665 68897960 -173766393 - AluSp SINE Alu -13 300 1 1225 168 180 25 chr1 68897960 68898080 -173766273 - AluJo SINE Alu -127 185 7 419 266 154 21 chr1 68898132 68898320 -173766033 - L2 LINE L2 -1 3312 3100 188 119 0 24 chr1 68898335 68898377 -173765976 + (TAAAAA)n Simple_repeat Simple_repeat 1 41 0 1773 178 3 3 chr1 68898439 68898726 -173765627 + AluJb SINE Alu 1 287 -25 711 170 77 81 chr1 68898794 68899041 -173765312 + MER112 DNA MER1_type 15 260 0 408 205 28 181 chr1 68899046 68899261 -173765092 - MER5A DNA MER1_type -3 186 5 265 284 30 59 chr1 68899275 68899523 -173764830 - L2 LINE L2 -1096 2218 1912 2060 108 4 0 chr1 68899576 68899854 -173764499 + AluSx SINE Alu 2 280 -32 2194 89 3 7 chr1 68900234 68900525 -173763828 + AluSg SINE Alu 19 308 -2 1313 108 0 0 chr1 68900898 68901060 -173763293 - AluSg/x SINE Alu -17 293 129 2299 86 3 0 chr1 68901060 68901375 -173762978 - AluSq SINE Alu 0 313 1 1313 108 0 0 chr1 68901375 68901388 -173762965 - AluSg/x SINE Alu -180 130 118 301 321 28 0 chr1 68901414 68901520 -173762833 - MIR SINE MIR -2 260 152 256 344 55 60 chr1 68901530 68901713 -173762640 + L2 LINE L2 3011 3192 -80 1828 185 7 0 chr1 68902468 68902760 -173761593 + AluJb SINE Alu 1 294 -18 757 92 54 113 chr1 68902962 68903147 -173761206 - L1MB7 LINE L1 -5 6179 6006 37 62 0 0 chr1 68903152 68903217 -173761136 + AT_rich Low_complexity Low_complexity 1 65 0 2140 94 0 27 chr1 68903537 68903835 -173760518 - AluSx SINE Alu -22 290 1 966 141 14 0 chr1 68904190 68904332 -173760021 - AluJb SINE Alu -10 302 159 2320 113 3 0 chr1 68904598 68904907 -173759446 - AluSp SINE Alu -3 310 1 812 202 16 22 chr1 68904996 68905179 -173759174 - MER20 DNA MER1_type -5 214 33 191 30 0 61 chr1 68905340 68905373 -173758980 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 776 148 22 7 chr1 68905374 68905509 -173758844 + L1PA16 LINE L1 6029 6165 -1 888 172 0 0 chr1 68905525 68905659 -173758694 + AluJo SINE Alu 1 134 -178 1697 61 0 19 chr1 68905893 68906106 -173758247 + AluSg/x SINE Alu 98 306 -4 281 149 15 0 chr1 68906275 68906342 -173758011 + (CA)n Simple_repeat Simple_repeat 1 68 0 340 282 65 73 chr1 68906427 68906634 -173757719 + L1ME LINE L1 5389 5593 -528 2314 77 40 0 chr1 68906634 68906931 -173757422 - AluSq SINE Alu -4 309 1 340 282 65 73 chr1 68906931 68907063 -173757290 + L1ME LINE L1 5593 5725 -396 355 249 115 42 chr1 68907135 68907300 -173757053 + MIR SINE MIR 78 254 -8 2356 101 0 3 chr1 68907392 68907700 -173756653 + AluSc SINE Alu 1 307 -2 30 0 0 0 chr1 68907746 68907776 -173756577 + AT_rich Low_complexity Low_complexity 1 30 0 1996 142 0 0 chr1 68908326 68908634 -173755719 + AluSx SINE Alu 1 308 0 25 0 0 0 chr1 68908686 68908711 -173755642 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 68908732 68908753 -173755600 + AT_rich Low_complexity Low_complexity 1 21 0 2068 181 140 18 chr1 68909246 68909507 -173754846 + L1MB7 LINE L1 5279 5507 -677 2226 114 7 0 chr1 68909507 68909806 -173754547 - AluSx SINE Alu -11 301 1 2068 181 140 18 chr1 68909806 68910087 -173754266 + L1MB7 LINE L1 5507 5887 -297 38768 65 12 2 chr1 68910100 68916182 -173748171 + L1PA5 LINE L1 11 6153 -1 549 187 83 63 chr1 68916190 68916457 -173747896 + L1MB7 LINE L1 5876 6184 0 22 0 0 0 chr1 68916467 68916489 -173747864 + AT_rich Low_complexity Low_complexity 1 22 0 1896 161 17 0 chr1 68916582 68916873 -173747480 + AluSx SINE Alu 1 296 -16 2164 104 3 17 chr1 68916875 68917174 -173747179 + AluSx SINE Alu 1 295 -17 364 300 92 0 chr1 68917235 68917355 -173746998 - MIR3 SINE MIR -34 174 44 197 83 28 0 chr1 68917656 68917692 -173746661 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1905 114 8 0 chr1 68917827 68918089 -173746264 + AluSx SINE Alu 6 269 -43 264 125 196 0 chr1 68918100 68918156 -173746197 + AluSp/q SINE Alu 237 303 0 234 0 0 0 chr1 68919211 68919237 -173745116 + (GA)n Simple_repeat Simple_repeat 1 26 0 2389 84 0 0 chr1 68921713 68922010 -173742343 - AluY SINE Alu -14 297 1 191 290 70 60 chr1 68922615 68922715 -173741638 - MIR SINE MIR -14 248 148 390 236 27 18 chr1 68924654 68924764 -173739589 + MER58B DNA MER1_type 230 340 -1 469 346 26 48 chr1 68924791 68925019 -173739334 + MIR SINE MIR 36 258 -4 458 258 58 32 chr1 68925680 68925835 -173738518 + MIR3 SINE MIR 35 193 -15 26 0 0 0 chr1 68926357 68926383 -173737970 + AT_rich Low_complexity Low_complexity 1 26 0 1847 142 3 24 chr1 68926383 68926671 -173737682 - AluJb SINE Alu -2 310 29 1269 177 0 9 chr1 68926783 68926998 -173737355 + AluJo SINE Alu 85 297 -15 358 268 232 0 chr1 68927093 68927261 -173737092 + MIR SINE MIR 12 218 -44 2359 83 3 7 chr1 68927339 68927639 -173736714 + AluSq SINE Alu 1 299 -14 272 273 0 0 chr1 68928199 68928265 -173736088 - MER91A DNA MER1_type -122 74 9 22 56 0 0 chr1 68928462 68928498 -173735855 + AT_rich Low_complexity Low_complexity 1 36 0 2486 93 0 0 chr1 68928646 68928958 -173735395 + AluSp SINE Alu 1 312 -1 1103 262 92 47 chr1 68929623 68930092 -173734261 - MLT1J LTR MaLR -10 501 12 1816 138 58 42 chr1 68930107 68930274 -173734079 - Tigger2a DNA MER2_type -2324 384 221 2197 122 0 3 chr1 68930274 68930568 -173733785 + AluSx SINE Alu 3 295 -17 1816 138 58 42 chr1 68930568 68930778 -173733575 - Tigger2a DNA MER2_type -2487 221 1 345 100 0 0 chr1 68931022 68931072 -173733281 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1952 134 0 0 chr1 68931073 68931341 -173733012 - AluSx SINE Alu -44 268 1 1874 166 3 10 chr1 68931466 68931773 -173732580 + AluJb SINE Alu 1 305 -7 2082 133 0 31 chr1 68931790 68932112 -173732241 + AluSx SINE Alu 1 312 0 346 293 79 30 chr1 68932147 68932311 -173732042 + MIR SINE MIR 64 235 -27 328 289 149 18 chr1 68932602 68932716 -173731637 - MIR SINE MIR -132 130 2 2151 130 0 0 chr1 68932861 68933160 -173731193 - AluSg SINE Alu -11 299 1 3712 61 72 17 chr1 68933271 68933364 -173730989 - MER41A LTR ERV1 0 554 468 2221 127 0 0 chr1 68933364 68933664 -173730689 + AluSq SINE Alu 1 300 -13 3712 61 72 17 chr1 68933664 68934095 -173730258 - MER41A LTR ERV1 -86 468 1 580 141 74 7 chr1 68935372 68935507 -173728846 - L1MB2 LINE L1 0 6171 6028 1943 60 0 8 chr1 68935519 68935770 -173728583 - L1PA5 LINE L1 -1 6153 5905 3559 167 22 77 chr1 68935773 68936656 -173727697 - L1MB2 LINE L1 -131 6040 5232 2218 111 0 0 chr1 68936656 68936954 -173727399 - AluSx SINE Alu -14 298 1 3559 167 22 77 chr1 68936954 68937153 -173727200 - L1MB2 LINE L1 -939 5232 5024 1463 179 45 3 chr1 68937184 68937496 -173726857 - L1MC1 LINE L1 -10 6323 5999 1384 195 8 8 chr1 68937496 68937753 -173726600 - AluJo SINE Alu -55 257 1 243 318 149 9 chr1 68938115 68938222 -173726131 - MIR3 SINE MIR -84 124 3 1607 148 141 0 chr1 68938328 68938591 -173725762 + AluJb SINE Alu 1 300 -2 1639 198 17 0 chr1 68938672 68938965 -173725388 + AluJb SINE Alu 1 298 -14 1849 169 47 0 chr1 68938992 68939336 -173725017 - MER46B DNA MER2_type -1 235 1 238 219 68 14 chr1 68939452 68939525 -173724828 + MIR SINE MIR 81 157 -105 22 35 0 0 chr1 68940019 68940048 -173724305 + AT_rich Low_complexity Low_complexity 1 29 0 305 304 76 76 chr1 68940920 68941078 -173723275 - MER5A DNA MER1_type -16 173 16 1048 83 0 0 chr1 68941366 68941498 -173722855 - AluSp/q SINE Alu -5 308 177 469 177 0 0 chr1 68941498 68941577 -173722776 + AluY SINE Alu 217 295 -16 762 89 0 0 chr1 68941580 68941681 -173722672 + LTR36 LTR ERV1 450 550 -61 294 77 0 138 chr1 68941678 68941743 -173722610 - LTR36 LTR ERV1 -555 56 1 * 261 0 0 0 chr1 68941895 68941924 -173722429 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1699 175 4 11 chr1 68941925 68942205 -173722148 - AluJo SINE Alu -32 280 3 296 295 26 0 chr1 68942358 68942436 -173721917 + L2 LINE L2 3193 3272 0 463 277 75 19 chr1 68943196 68943355 -173720998 + MIR SINE MIR 15 182 -80 183 42 0 0 chr1 68943356 68943380 -173720973 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2041 127 0 3 chr1 68943382 68943666 -173720687 - AluSq SINE Alu -28 285 3 312 265 128 41 chr1 68943689 68944032 -173720321 - L1MC5 LINE L1 -48 7913 7541 1935 164 0 6 chr1 68944039 68944350 -173720003 - AluSx SINE Alu -3 309 1 29 20 0 39 chr1 68944670 68944692 -173719661 + AT_rich Low_complexity Low_complexity 1 22 -27 842 161 60 24 chr1 68944692 68944860 -173719493 + FAM SINE Alu 1 174 -1 29 20 0 39 chr1 68944860 68944888 -173719465 + AT_rich Low_complexity Low_complexity 22 49 0 402 239 129 13 chr1 68944889 68945044 -173719309 - L1ME3A LINE L1 -10 6160 5988 395 83 17 0 chr1 68945157 68945217 -173719136 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 2265 101 10 7 chr1 68945217 68945525 -173718828 - AluSp SINE Alu -4 309 1 948 205 73 72 chr1 68946256 68946333 -173718020 - MER39 LTR ERV1 0 707 632 2306 104 0 0 chr1 68946333 68946631 -173717722 + AluSc SINE Alu 1 298 -11 948 205 73 72 chr1 68946631 68946992 -173717361 - MER39 LTR ERV1 -75 632 219 1068 181 0 0 chr1 68947098 68947269 -173717084 + AluJb SINE Alu 136 306 -6 378 0 0 0 chr1 68947398 68947440 -173716913 + (TG)n Simple_repeat Simple_repeat 1 42 0 358 308 28 14 chr1 68948209 68948352 -173716001 + MER5B DNA MER1_type 3 147 -31 1283 184 88 36 chr1 68948365 68948631 -173715722 - MER39 LTR ERV1 -3 704 416 2263 97 10 0 chr1 68948631 68948929 -173715424 - AluSx SINE Alu -11 301 1 1283 184 88 36 chr1 68948929 68948993 -173715360 - MER39 LTR ERV1 -291 416 357 440 260 79 8 chr1 68949112 68949239 -173715114 - MER39 LTR ERV1 -571 136 1 249 267 0 0 chr1 68949400 68949460 -173714893 + MIR SINE MIR 87 146 -62 505 111 0 12 chr1 68949822 68949903 -173714450 + MADE1 DNA Mariner 1 80 0 253 326 82 0 chr1 68950632 68950730 -173713623 - L2 LINE L2 -23 3290 3185 1526 173 24 0 chr1 68950802 68951051 -173713302 - AluJo SINE Alu -30 282 28 2050 128 3 7 chr1 68951124 68951421 -173712932 - AluSx SINE Alu -16 296 1 188 402 170 0 chr1 68951782 68951894 -173712459 + L2 LINE L2 3102 3232 -40 2189 113 0 3 chr1 68951990 68952282 -173712071 + AluSc SINE Alu 1 291 -18 670 103 132 0 chr1 68952390 68952526 -173711827 - L1MB3 LINE L1 0 6183 6030 276 306 90 15 chr1 68952969 68953103 -173711250 - MIR3 SINE MIR -56 152 9 330 177 0 4 chr1 68953115 68953190 -173711163 - Alu SINE Alu -247 53 1 1535 204 48 7 chr1 68953373 68953667 -173710686 - AluJo SINE Alu -6 306 1 378 263 50 77 chr1 68953719 68954305 -173710048 - L1M4 LINE L1 -2919 3227 2658 1994 141 0 0 chr1 68954876 68955184 -173709169 + AluSx SINE Alu 1 308 0 278 338 96 13 chr1 68956212 68956369 -173707984 - MIR SINE MIR -48 214 45 21 36 0 0 chr1 68956441 68956469 -173707884 + AT_rich Low_complexity Low_complexity 1 28 0 352 356 17 0 chr1 68956482 68956597 -173707756 + L2 LINE L2 3141 3257 -15 1067 161 6 17 chr1 68956851 68957025 -173707328 + FAM SINE Alu 1 172 -3 23 54 0 0 chr1 68957097 68957134 -173707219 + AT_rich Low_complexity Low_complexity 1 37 0 236 338 169 7 chr1 68957990 68958132 -173706221 - L2 LINE L2 0 3272 3108 333 0 0 0 chr1 68958142 68958179 -173706174 + (ATG)n Simple_repeat Simple_repeat 3 39 0 189 250 150 62 chr1 68958233 68958313 -173706040 - MIR SINE MIR -171 91 5 424 322 106 10 chr1 68958853 68959061 -173705292 - MIR SINE MIR -34 228 1 2386 102 0 0 chr1 68959074 68959377 -173704976 - AluSp SINE Alu -10 303 1 2689 220 105 17 chr1 68959895 68960608 -173703745 - MER21B LTR ERV1 -69 794 19 443 217 0 22 chr1 68960637 68960729 -173703624 - MER21B LTR ERV1 -773 90 1 208 303 0 0 chr1 68961063 68961129 -173703224 + MIR SINE MIR 88 153 -109 * 441 281 16 39 chr1 68961123 68961251 -173703102 - L2 LINE L2 0 3272 3148 2224 113 7 3 chr1 68961513 68961813 -173702540 - AluSq SINE Alu -12 301 1 211 333 38 38 chr1 68963161 68963266 -173701087 - MIR3 SINE MIR -23 185 81 2341 110 3 0 chr1 68963691 68964001 -173700352 - AluSx SINE Alu -1 311 1 351 0 0 0 chr1 68964745 68964784 -173699569 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 943 190 0 6 chr1 68964795 68964953 -173699400 - AluJo SINE Alu -31 281 125 287 44 110 0 chr1 68964953 68965044 -173699309 + (TA)n Simple_repeat Simple_repeat 2 102 0 2129 130 0 13 chr1 68965044 68965343 -173699010 - AluSx SINE Alu -17 295 1 771 203 0 21 chr1 68965343 68965486 -173698867 - AluJo SINE Alu -172 140 1 1942 140 0 0 chr1 68966378 68966649 -173697704 + AluSx SINE Alu 34 304 -8 2159 97 6 35 chr1 68966829 68967148 -173697205 - AluSx SINE Alu -2 310 1 7851 25 16 0 chr1 68967160 68968860 -173695493 - L1PA3 LINE L1 -3 6152 4437 222 385 28 0 chr1 68969117 68969226 -173695127 + MIR SINE MIR 29 140 -122 2437 90 0 7 chr1 68969384 68969694 -173694659 + AluSq SINE Alu 1 308 -5 189 341 89 55 chr1 68970825 68971241 -173693112 + L2 LINE L2 2825 3254 -18 319 219 7 0 chr1 68971523 68971600 -173692753 + MIR SINE MIR 64 144 -64 775 178 8 0 chr1 68972102 68972231 -173692122 - AluSg/x SINE Alu -18 292 163 512 93 0 27 chr1 68972225 68972300 -173692053 - AluY SINE Alu -226 92 20 * 1698 169 20 37 chr1 68972441 68972736 -173691617 + AluJo SINE Alu 1 290 -22 25 0 0 0 chr1 68972937 68972962 -173691391 + AT_rich Low_complexity Low_complexity 1 25 0 2040 124 0 7 chr1 68973048 68973375 -173690978 - AluSx SINE Alu 0 312 1 1797 157 74 6 chr1 68973754 68974079 -173690274 - MER7A DNA MER2_type 0 346 2 1188 212 76 17 chr1 68974606 68974908 -173689445 - MLT1A2 LTR MaLR -54 320 1 1797 148 30 0 chr1 68975439 68975736 -173688617 + AluJb SINE Alu 6 310 0 8415 164 118 31 chr1 68976205 68976762 -173687591 - Tigger1 DNA MER2_type 0 2418 1911 2350 95 13 0 chr1 68976762 68977068 -173687285 + AluSg SINE Alu 1 310 0 8415 164 118 31 chr1 68977068 68978685 -173685668 - Tigger1 DNA MER2_type -507 1911 55 948 209 11 0 chr1 68978837 68979014 -173685339 + AluJb SINE Alu 134 312 0 226 292 267 0 chr1 68979257 68979377 -173684976 + MIR SINE MIR 88 239 -23 2159 129 0 0 chr1 68980739 68981033 -173683320 - AluSx SINE Alu -18 294 1 1544 176 22 22 chr1 68981042 68981315 -173683038 - AluJo SINE Alu -39 273 1 256 223 187 36 chr1 68981404 68981514 -173682839 - L1ME4a LINE L1 -205 5916 5779 2004 164 0 0 chr1 68981514 68981826 -173682527 - AluJb SINE Alu 0 312 1 256 223 187 36 chr1 68981826 68981854 -173682499 - L1ME4a LINE L1 -342 5779 5757 2323 82 0 13 chr1 68981978 68982282 -173682071 + AluSx SINE Alu 2 301 -11 385 200 59 0 chr1 68982366 68982451 -173681902 - MIR SINE MIR -63 199 110 1094 145 0 0 chr1 68982512 68982671 -173681682 - AluSg/x SINE Alu -32 278 120 384 176 0 0 chr1 68982674 68982742 -173681611 - AluS SINE Alu 0 300 233 799 110 9 9 chr1 68982742 68982851 -173681502 - AluJb SINE Alu -126 186 78 1189 142 71 5 chr1 68982851 68983048 -173681305 - AluSq SINE Alu -101 212 3 1879 119 0 0 chr1 68984128 68984388 -173679965 + AluSg SINE Alu 36 295 -15 2109 127 6 25 chr1 68984401 68984717 -173679636 + AluSx SINE Alu 1 310 -2 359 286 91 13 chr1 68985526 68985745 -173678608 + MIR SINE MIR 30 262 0 180 209 93 0 chr1 68985823 68985866 -173678487 + MIR SINE MIR 32 78 -130 1993 105 30 24 chr1 68985922 68986218 -173678135 + AluSx SINE Alu 1 298 -14 1781 94 101 29 chr1 68986218 68986494 -173677859 + AluSg SINE Alu 1 296 -14 2001 126 7 3 chr1 68986846 68987139 -173677214 + AluJo SINE Alu 1 294 -18 191 340 7 76 chr1 68987382 68987526 -173676827 + L3b LINE CR1 1116 1249 -334 1951 166 60 23 chr1 68987717 68987774 -173676579 - MLT1A1 LTR MaLR -2 363 310 222 37 0 0 chr1 68987774 68987801 -173676552 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1967 129 3 11 chr1 68987801 68988087 -173676266 - AluSx SINE Alu -28 284 1 1951 166 60 23 chr1 68988087 68988378 -173675975 - MLT1A1 LTR MaLR -54 311 1 191 271 21 0 chr1 68988406 68988454 -173675899 + L2 LINE L2 3220 3268 -4 2371 94 0 0 chr1 68989967 68990266 -173674087 + AluSq SINE Alu 1 299 -14 234 315 179 76 chr1 68990363 68990614 -173673739 - L2 LINE L2 0 3272 2996 3023 187 10 13 chr1 68990772 68991377 -173672976 - L1P LINE L1 -2109 4037 3435 540 0 0 0 chr1 68991616 68991676 -173672677 + (CA)n Simple_repeat Simple_repeat 1 60 0 1897 148 0 7 chr1 68992490 68992797 -173671556 + AluSx SINE Alu 1 305 0 318 26 0 0 chr1 68993414 68993453 -173670900 + (TG)n Simple_repeat Simple_repeat 2 40 0 785 163 0 13 chr1 68993756 68993912 -173670441 + L1M3 LINE L1 5592 5741 -430 5437 161 12 18 chr1 68993919 68995147 -173669206 - L1MB3 LINE L1 -21 6162 4942 819 197 0 0 chr1 68995168 68995310 -173669043 - FAM SINE Alu -34 151 10 580 209 0 43 chr1 68995322 68995446 -173668907 - L1M4 LINE L1 -1187 4959 4841 1678 186 0 16 chr1 68995452 68995759 -173668594 + AluJo SINE Alu 5 306 -6 962 147 0 51 chr1 68995759 68995916 -173668437 + AluJo/FRAM SINE Alu 137 285 -27 297 0 0 0 chr1 68995916 68995949 -173668404 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1024 197 0 5 chr1 68995958 68996156 -173668197 - L1M4 LINE L1 -1311 4835 4639 1930 206 40 11 chr1 68997470 68997926 -173666427 - L1ME2 LINE L1 -1 6163 5695 565 195 60 112 chr1 68997971 68998222 -173666131 - MLT1I LTR MaLR -6 403 166 23 0 0 0 chr1 68998496 68998519 -173665834 + AT_rich Low_complexity Low_complexity 1 23 0 713 228 84 76 chr1 68998623 68998873 -173665480 + MIR SINE MIR 1 252 -10 1279 228 149 15 chr1 68998927 68999256 -173665097 - MLT1E2 LTR MaLR 0 626 254 310 196 239 17 chr1 68999353 68999523 -173664830 - MLT1E2 LTR MaLR -381 273 1 2347 118 44 16 chr1 68999697 69000062 -173664291 - THE1C LTR MaLR 0 375 1 279 286 163 34 chr1 69000759 69000906 -173663447 - L2 LINE L2 -5 3267 3102 2158 120 0 0 chr1 69001114 69001414 -173662939 + AluSx SINE Alu 3 302 -10 183 370 0 12 chr1 69001450 69001531 -173662822 - L3 LINE CR1 -3 1574 1495 360 238 60 12 chr1 69002423 69002507 -173661846 - MIR SINE MIR -80 128 41 4470 121 42 60 chr1 69052567 69052755 -173611598 - L1PA16 LINE L1 -10 6156 5966 2309 113 0 0 chr1 69052755 69053056 -173611297 - AluSq SINE Alu -12 301 1 4470 121 42 60 chr1 69053056 69053243 -173611110 - L1PA16 LINE L1 -200 5966 5777 2410 67 0 0 chr1 69053243 69053528 -173610825 - AluY SINE Alu -21 290 6 4470 121 42 60 chr1 69053528 69053970 -173610383 - L1PA16 LINE L1 -389 5777 5353 558 158 0 0 chr1 69053970 69054065 -173610288 - AluJ/FRAM SINE Alu 0 312 218 1745 162 17 10 chr1 69054065 69054362 -173609991 - AluJo SINE Alu -4 308 10 6870 197 19 12 chr1 69054368 69055844 -173608509 - L1 LINE L1 -780 5366 3881 2017 114 17 23 chr1 69055902 69056201 -173608152 - AluSx SINE Alu -15 297 1 2054 122 14 3 chr1 69057028 69057315 -173607038 + AluSx SINE Alu 1 290 -22 234 283 152 11 chr1 69057749 69057841 -173606512 - L2 LINE L2 -12 3301 3197 342 215 215 37 chr1 69057877 69057984 -173606369 - MIR SINE MIR -22 240 115 1003 181 0 0 chr1 69058087 69058247 -173606106 - AluJb SINE Alu -16 296 137 1983 164 106 129 chr1 69058344 69058816 -173605537 - LTR8A LTR ERV1 -17 710 259 2428 93 0 3 chr1 69058816 69059126 -173605227 - AluY SINE Alu -2 309 1 1983 164 106 129 chr1 69059126 69059380 -173604973 - LTR8A LTR ERV1 -468 259 1 1924 139 21 0 chr1 69059506 69059794 -173604559 - AluJb SINE Alu -18 294 1 281 308 0 0 chr1 69059919 69059997 -173604356 - MLT1K LTR MaLR 0 588 511 222 62 0 0 chr1 69060009 69060041 -173604312 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 314 303 0 0 chr1 69060268 69060344 -173604009 - MLT1K LTR MaLR -358 230 155 299 210 244 34 chr1 69060937 69061056 -173603297 + MIR SINE MIR 17 160 -102 227 226 170 63 chr1 69061382 69061541 -173602812 + L2 LINE L2 3130 3305 -8 221 258 40 5 chr1 69061620 69061686 -173602667 - MIR SINE MIR -123 85 19 440 243 28 111 chr1 69063032 69063191 -173601162 - MIR SINE MIR -26 236 92 2194 84 40 20 chr1 69063191 69063487 -173600866 - AluSx SINE Alu -10 302 1 440 243 28 111 chr1 69063487 69063545 -173600808 - MIR SINE MIR -170 92 31 1803 155 14 14 chr1 69064168 69064465 -173599888 + 7SLRNA srpRNA srpRNA 23 319 -1 1694 155 10 45 chr1 69065041 69065360 -173598993 + AluSx SINE Alu 1 309 0 785 203 0 0 chr1 69065409 69065532 -173598821 + FLAM_A SINE Alu 1 123 -10 1441 19 0 0 chr1 69065911 69066068 -173598285 + L1PA4 LINE L1 5996 6152 -3 867 215 0 13 chr1 69066140 69066298 -173598055 - FRAM SINE Alu -20 156 1 23 0 0 0 chr1 69066299 69066322 -173598031 + AT_rich Low_complexity Low_complexity 1 23 0 2186 125 0 0 chr1 69066382 69066686 -173597667 + AluSx SINE Alu 1 304 -8 194 303 61 0 chr1 69066737 69066803 -173597550 - MIR3 SINE MIR -6 202 133 567 309 45 29 chr1 69066816 69067059 -173597294 + L3 LINE CR1 1254 1500 -77 308 274 195 12 chr1 69067071 69067235 -173597118 - MIR SINE MIR -2 260 67 2455 66 0 10 chr1 69067337 69067627 -173596726 + AluY SINE Alu 1 289 -22 189 0 0 0 chr1 69067627 69067648 -173596705 + (CATA)n Simple_repeat Simple_repeat 2 22 0 313 325 57 41 chr1 69067916 69068110 -173596243 - MIR SINE MIR -12 250 54 1884 154 10 3 chr1 69068212 69068511 -173595842 - AluJo SINE Alu -11 301 1 811 256 64 74 chr1 69068658 69068970 -173595383 + MLT1J LTR MaLR 99 407 -104 430 228 26 18 chr1 69069545 69069659 -173594694 + MER5B DNA MER1_type 3 117 -61 1887 156 0 0 chr1 69069789 69070065 -173594288 - AluJo SINE Alu -31 281 6 236 283 67 0 chr1 69070070 69070130 -173594223 - L2 LINE L2 -21 3292 3229 287 331 70 45 chr1 69070184 69070341 -173594012 + MIR SINE MIR 22 182 -80 578 304 52 13 chr1 69070437 69070667 -173593686 + MIR SINE MIR 5 243 -19 241 91 91 0 chr1 69070782 69070826 -173593527 - L1MA8 LINE L1 -8 6283 6236 1527 183 25 14 chr1 69070864 69071149 -173593204 - AluJb SINE Alu -24 288 1 1531 136 73 41 chr1 69071149 69071465 -173592888 - L1MA8 LINE L1 -47 6244 5919 250 400 120 7 chr1 69071497 69071647 -173592706 - L2 LINE L2 -560 2754 2588 2412 81 0 10 chr1 69072057 69072366 -173591987 + AluSq SINE Alu 1 306 -7 1821 161 14 3 chr1 69073040 69073332 -173591021 + AluJb SINE Alu 1 295 -17 269 106 0 21 chr1 69073332 69073379 -173590974 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 2151 90 24 7 chr1 69074383 69074671 -173589682 - AluSg SINE Alu -17 293 1 317 308 58 26 chr1 69075162 69075318 -173589035 + MIR SINE MIR 47 207 -55 2457 93 3 0 chr1 69075386 69075697 -173588656 + AluSx SINE Alu 1 312 0 471 275 41 87 chr1 69075750 69075871 -173588482 - MIR SINE MIR -32 230 122 1331 150 66 26 chr1 69075871 69076098 -173588255 + MER46A DNA MER2_type 1 236 0 471 275 41 87 chr1 69076098 69076194 -173588159 - MIR SINE MIR -140 122 23 342 0 0 0 chr1 69076365 69076403 -173587950 + (CA)n Simple_repeat Simple_repeat 1 38 0 269 303 109 23 chr1 69076410 69076585 -173587768 - L1MC/D LINE L1 -2233 5575 5386 1748 131 11 8 chr1 69076992 69077260 -173587093 + AluSx SINE Alu 35 303 -9 39 38 0 0 chr1 69077263 69077316 -173587037 + AT_rich Low_complexity Low_complexity 1 53 0 584 276 87 85 chr1 69077386 69077961 -173586392 - MLT1L LTR MaLR -4 611 36 2131 116 0 52 chr1 69078420 69078749 -173585604 - AluSx SINE Alu 0 312 1 386 256 114 20 chr1 69078966 69079166 -173585187 - MIR SINE MIR -10 252 16 21 0 0 0 chr1 69079561 69079582 -173584771 + AT_rich Low_complexity Low_complexity 1 21 0 2371 91 0 10 chr1 69079582 69079890 -173584463 + AluSp SINE Alu 1 305 -8 2383 78 3 0 chr1 69080560 69080853 -173583500 + AluSp SINE Alu 1 294 -19 267 286 89 4 chr1 69080857 69080997 -173583356 + MIR SINE MIR 90 249 -13 449 169 136 34 chr1 69081001 69081119 -173583234 - L2 LINE L2 -1 3312 3183 360 81 290 0 chr1 69081154 69081216 -173583137 - MER116 DNA Mariner 0 80 1 1208 179 4 44 chr1 69081269 69081498 -173582855 + AluJb SINE Alu 76 295 -17 2310 95 0 0 chr1 69081962 69082258 -173582095 + AluSc SINE Alu 2 297 -12 606 279 0 7 chr1 69082588 69082724 -173581629 + MIR SINE MIR 19 153 -109 2905 183 26 4 chr1 69082940 69083444 -173580909 - MLT2B2 LTR ERVL 0 515 1 236 270 153 9 chr1 69083452 69083563 -173580790 - MIR SINE MIR -42 220 94 1050 179 0 0 chr1 69083568 69083724 -173580629 + FRAM SINE Alu 1 156 -10 1785 128 4 0 chr1 69083729 69083979 -173580374 + AluSq SINE Alu 45 295 -18 1796 136 20 20 chr1 69084020 69084314 -173580039 - AluSx SINE Alu -18 294 1 22 35 0 0 chr1 69085556 69085585 -173578768 + AT_rich Low_complexity Low_complexity 1 29 0 326 315 73 18 chr1 69085709 69085874 -173578479 + MIR SINE MIR 89 262 0 489 318 61 0 chr1 69086030 69086178 -173578175 + Charlie8 DNA MER1_type 1 157 -2260 258 351 82 12 chr1 69086347 69086518 -173577835 - L2 LINE L2 -461 2853 2671 2070 127 17 0 chr1 69086526 69086817 -173577536 + AluSx SINE Alu 1 296 -16 448 388 26 16 chr1 69086879 69087186 -173577167 - L2 LINE L2 -640 2674 2365 230 337 102 0 chr1 69087402 69087500 -173576853 - MIR SINE MIR -105 157 50 1308 157 5 14 chr1 69087544 69087760 -173576593 - AluJo SINE Alu -3 309 96 309 100 67 0 chr1 69088873 69088963 -173575390 + (TA)n Simple_repeat Simple_repeat 2 97 0 189 333 48 0 chr1 69088980 69089064 -173575289 - MIR SINE MIR -73 189 102 289 271 225 0 chr1 69089077 69089228 -173575125 - MIR SINE MIR -24 238 54 2491 67 3 0 chr1 69089570 69089867 -173574486 + AluSp SINE Alu 1 298 -15 2708 178 234 62 chr1 69090167 69091037 -173573316 + LTR28 LTR ERV1 1 1020 0 258 32 0 0 chr1 69091501 69091532 -173572821 + (CA)n Simple_repeat Simple_repeat 2 32 0 939 129 0 50 chr1 69091647 69091786 -173572567 + FLAM_C SINE Alu 1 132 -1 1632 114 15 49 chr1 69091918 69092182 -173572171 - AluJo SINE Alu -11 301 47 197 289 0 19 chr1 69092258 69092310 -173572043 - MIR SINE MIR -13 249 199 813 145 0 16 chr1 69092398 69092522 -173571831 - AluJb SINE Alu -21 291 170 2030 109 0 0 chr1 69092525 69092781 -173571572 - AluSq SINE Alu -57 256 1 1157 236 87 16 chr1 69093000 69093310 -173571043 + MER58B DNA MER1_type 5 336 -5 233 57 29 0 chr1 69093407 69093442 -173570911 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2203 103 3 0 chr1 69093707 69094016 -173570337 - AluSq SINE Alu 0 310 1 496 254 18 0 chr1 69094398 69094508 -173569845 - MER58B DNA MER1_type -6 335 224 1311 245 14 0 chr1 69094902 69095184 -173569169 - MER58B DNA MER1_type 0 341 56 2068 93 17 28 chr1 69095483 69095773 -173568580 - AluSq SINE Alu -26 287 1 2239 123 0 0 chr1 69096315 69096617 -173567736 + AluSx SINE Alu 1 302 -10 1072 176 0 45 chr1 69097180 69097379 -173566974 + AluJo SINE Alu 2 191 -121 1121 156 6 6 chr1 69097696 69097875 -173566478 + AluSg/x SINE Alu 84 262 -48 383 246 109 29 chr1 69097878 69098016 -173566337 + HAL1 LINE L1 2337 2485 -22 1988 134 7 10 chr1 69098016 69098315 -173566038 + AluJb SINE Alu 1 298 -14 266 267 58 0 chr1 69098470 69098556 -173565797 + HAL1 LINE L1 2245 2335 -172 2072 133 10 0 chr1 69098697 69098998 -173565355 + AluSx SINE Alu 1 304 -8 465 240 164 70 chr1 69099049 69099143 -173565210 - MER5A DNA MER1_type -2 187 103 2252 87 10 3 chr1 69099143 69099443 -173564910 - AluSq SINE Alu -11 302 1 465 240 164 70 chr1 69099443 69099519 -173564834 - MER5A DNA MER1_type -86 103 1 635 136 169 42 chr1 69099605 69099723 -173564630 - FLAM_C SINE Alu 0 133 1 2438 83 3 6 chr1 69099728 69100042 -173564311 - AluSq SINE Alu 0 313 1 1442 124 0 0 chr1 69100458 69100652 -173563701 - AluSq SINE Alu -118 195 2 2007 130 3 3 chr1 69100664 69100980 -173563373 - AluSx SINE Alu 0 316 1 1587 199 7 4 chr1 69102050 69102331 -173562022 + AluJb SINE Alu 1 282 -30 812 144 0 53 chr1 69102341 69102473 -173561880 - AluJo SINE Alu -178 134 10 459 0 0 0 chr1 69102496 69102547 -173561806 + (CA)n Simple_repeat Simple_repeat 2 52 0 2708 194 64 75 chr1 69103663 69104318 -173560035 + MER82 DNA MER2_type 2 649 -4 2194 77 0 4 chr1 69104582 69104854 -173559499 - AluSx SINE Alu -41 271 1 457 261 51 64 chr1 69104919 69105160 -173559193 - MIR SINE MIR -19 243 3 1153 209 58 74 chr1 69105314 69105691 -173558662 + MLT1H LTR MaLR 146 516 -33 242 222 19 0 chr1 69105870 69105924 -173558429 - MIR3 SINE MIR -3 205 151 597 156 0 0 chr1 69105925 69106015 -173558338 + AluS SINE Alu 2 91 -222 2472 93 0 0 chr1 69106016 69106326 -173558027 + AluY SINE Alu 2 311 0 1522 143 0 5 chr1 69106328 69106545 -173557808 + AluSc SINE Alu 77 292 -17 24 0 0 0 chr1 69106803 69106827 -173557526 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr1 69107285 69107315 -173557038 + (T)n Simple_repeat Simple_repeat 1 30 0 1954 182 79 11 chr1 69108173 69108541 -173555812 - MSTD LTR MaLR 0 396 4 234 234 0 0 chr1 69108641 69108688 -173555665 - L2 LINE L2 -3 3310 3264 2314 113 3 0 chr1 69109189 69109500 -173554853 - AluSx SINE Alu 0 312 1 1831 174 0 0 chr1 69109834 69110151 -173554202 + AluJo SINE Alu 1 317 0 2037 125 3 34 chr1 69110505 69110826 -173553527 + AluJb SINE Alu 1 311 -1 478 302 65 9 chr1 69111147 69111362 -173552991 + MIR SINE MIR 7 233 -29 2086 135 0 13 chr1 69111408 69111711 -173552642 + AluSx SINE Alu 1 299 -13 351 297 84 19 chr1 69111753 69111908 -173552445 - MIR SINE MIR -89 173 9 2250 80 9 62 chr1 69112603 69112927 -173551426 - AluSx SINE Alu -5 307 1 697 120 137 0 chr1 69113883 69114000 -173550353 + FLAM_A SINE Alu 1 133 0 417 70 0 0 chr1 69114006 69114017 -173550336 + (CA)n Simple_repeat Simple_repeat 1 68 0 417 70 0 0 chr1 69114017 69114074 -173550279 + (CA)n Simple_repeat Simple_repeat 2 58 0 1773 172 0 3 chr1 69114125 69114416 -173549937 + AluJo SINE Alu 1 290 -22 2442 68 3 0 chr1 69114962 69115255 -173549098 + AluY SINE Alu 1 294 -17 347 265 120 8 chr1 69115761 69115878 -173548475 - MIR SINE MIR -108 154 25 201 135 54 0 chr1 69116784 69116821 -173547532 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 654 158 0 45 chr1 69117726 69117859 -173546494 + L1MA10 LINE L1 6204 6330 -4 497 288 91 30 chr1 69119400 69119598 -173544755 - MIR SINE MIR -28 234 25 2316 97 0 3 chr1 69119598 69119897 -173544456 - AluSg SINE Alu -12 298 1 187 195 49 0 chr1 69120045 69120086 -173544267 + L2 LINE L2 3016 3058 -214 248 362 64 0 chr1 69120133 69120162 -173544191 - MIR3 SINE MIR -14 194 168 2222 110 0 3 chr1 69120162 69120463 -173543890 + AluSx SINE Alu 1 300 -12 248 362 64 0 chr1 69120463 69120574 -173543779 - MIR3 SINE MIR -40 168 45 788 257 15 10 chr1 69120803 69121009 -173543344 + MIR SINE MIR 12 218 -44 203 222 37 0 chr1 69121053 69121107 -173543246 - MIR SINE MIR -111 151 96 1718 187 3 3 chr1 69121294 69121594 -173542759 + AluJb SINE Alu 1 300 -12 973 156 78 30 chr1 69122697 69122864 -173541489 + FAM SINE Alu 1 175 0 2311 108 0 7 chr1 69122966 69123273 -173541080 + AluSq SINE Alu 2 306 -7 798 172 16 0 chr1 69123290 69123412 -173540941 + FLAM_C SINE Alu 1 124 -9 565 204 225 5 chr1 69124127 69124318 -173540035 + L1MC4a LINE L1 5613 5845 -1963 249 356 0 11 chr1 69126397 69126484 -173537869 - L2 LINE L2 -290 2982 2897 2092 108 0 7 chr1 69126563 69126871 -173537482 - AluSx SINE Alu 0 306 1 2004 108 18 14 chr1 69127599 69127885 -173536468 + AluSx SINE Alu 1 287 -25 322 246 35 58 chr1 69128081 69128252 -173536101 + L1MC4 LINE L1 7867 8033 -9 2145 96 3 32 chr1 69129422 69129734 -173534619 + AluSx SINE Alu 1 303 -9 2342 99 0 0 chr1 69130025 69130328 -173534025 + AluSx SINE Alu 1 303 -9 2355 88 3 0 chr1 69130485 69130780 -173533573 + AluSx SINE Alu 1 296 -16 28 0 0 0 chr1 69130911 69130939 -173533414 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 69131237 69131262 -173533091 + AT_rich Low_complexity Low_complexity 1 25 0 598 246 54 88 chr1 69131334 69131408 -173532945 - L1ME4a LINE L1 -280 5841 5766 2598 64 0 0 chr1 69131408 69131719 -173532634 - AluY SINE Alu 0 311 1 598 246 54 88 chr1 69131719 69131941 -173532412 - L1ME4a LINE L1 -355 5766 5555 2053 144 7 0 chr1 69132020 69132325 -173532028 - AluSx SINE Alu -5 307 1 1932 165 65 52 chr1 69132493 69132875 -173531478 - MLT1B LTR MaLR 0 390 4 2185 112 3 37 chr1 69132887 69133210 -173531143 + AluJb SINE Alu 1 312 0 508 266 0 58 chr1 69133249 69133403 -173530950 + MIR SINE MIR 118 262 0 1991 139 0 3 chr1 69133710 69134013 -173530340 - AluSx SINE Alu -10 302 1 371 308 117 58 chr1 69134019 69134448 -173529905 - L1ME LINE L1 -5611 459 6 189 0 0 0 chr1 69134778 69134799 -173529554 + (TG)n Simple_repeat Simple_repeat 2 22 0 555 255 104 35 chr1 69134822 69134946 -173529407 - MIR SINE MIR -14 248 134 2702 123 39 25 chr1 69134946 69135384 -173528969 - MER65A LTR ERV1 -1 444 1 555 255 104 35 chr1 69135384 69135436 -173528917 - MIR SINE MIR -128 134 87 1972 115 24 3 chr1 69135436 69135723 -173528630 + AluSq SINE Alu 1 293 -20 555 255 104 35 chr1 69135723 69135776 -173528577 - MIR SINE MIR -175 87 2 2081 104 14 0 chr1 69137571 69137868 -173526485 + AluSx SINE Alu 1 301 -11 1717 159 10 7 chr1 69137965 69138260 -173526093 + AluJo SINE Alu 1 296 -16 862 124 0 22 chr1 69138295 69138432 -173525921 + AluJb SINE Alu 1 134 -178 36 23 0 0 chr1 69138432 69138475 -173525878 + AT_rich Low_complexity Low_complexity 1 43 0 1077 55 0 0 chr1 69138483 69138610 -173525743 + AluSc SINE Alu 2 128 -181 370 102 0 22 chr1 69138733 69138799 -173525554 - Alu SINE Alu -255 48 2 283 346 93 0 chr1 69138800 69138907 -173525446 + L2 LINE L2 2958 3074 -198 2068 127 0 13 chr1 69138969 69139277 -173525076 + AluSx SINE Alu 1 304 -8 293 200 0 0 chr1 69139344 69139399 -173524954 + L1MB2 LINE L1 5537 5591 -580 825 253 6 0 chr1 69139399 69139573 -173524780 + AluJb SINE Alu 119 293 -19 2201 108 0 7 chr1 69139602 69139909 -173524444 + AluSq SINE Alu 3 307 -6 2339 156 80 46 chr1 69139909 69140233 -173524120 + L1MB2 LINE L1 5614 5962 -209 1955 134 0 7 chr1 69140233 69140532 -173523821 + AluSx SINE Alu 5 301 -11 2339 156 80 46 chr1 69140532 69140707 -173523646 + L1MB2 LINE L1 5962 6130 -41 2697 23 0 0 chr1 69140718 69141027 -173523326 + AluYb8 SINE Alu 10 318 0 1293 62 0 0 chr1 69141027 69141188 -173523165 + AluY SINE Alu 133 293 -18 560 144 10 10 chr1 69141347 69141444 -173522909 + AluSg SINE Alu 3 99 -211 213 215 46 23 chr1 69141697 69141763 -173522590 + (TA)n Simple_repeat Simple_repeat 2 65 -69 2060 93 21 0 chr1 69141763 69142043 -173522310 - AluSq SINE Alu -27 286 1 213 215 46 23 chr1 69142043 69142106 -173522247 + (TA)n Simple_repeat Simple_repeat 65 134 0 232 284 77 32 chr1 69142106 69142261 -173522092 - L1ME LINE L1 -346 5816 5655 1883 134 13 16 chr1 69142487 69142801 -173521552 - AluSq SINE Alu 0 313 1 431 234 120 40 chr1 69143112 69143433 -173520920 - L1MC4 LINE L1 -66 7976 7509 449 118 0 0 chr1 69143586 69143654 -173520699 + AluS SINE Alu 2 69 -244 1827 126 10 14 chr1 69143754 69144048 -173520305 - AluSc SINE Alu -16 293 1 23 0 0 0 chr1 69144154 69144177 -173520176 + AT_rich Low_complexity Low_complexity 1 23 0 2034 110 24 0 chr1 69144198 69144488 -173519865 - AluSg SINE Alu -10 300 4 1681 175 20 0 chr1 69145098 69145395 -173518958 + AluJb SINE Alu 3 305 -7 206 304 61 17 chr1 69145424 69145539 -173518814 + L2 LINE L2 2766 2885 -429 1979 136 7 0 chr1 69145717 69146027 -173518326 - AluSq SINE Alu -1 312 1 1860 119 22 7 chr1 69146041 69146343 -173518010 - AluSp SINE Alu 0 306 1 858 189 24 12 chr1 69146351 69146515 -173517838 - FAM SINE Alu -9 166 1 1969 137 7 0 chr1 69146530 69146829 -173517524 - AluSx SINE Alu -10 302 2 1942 96 28 7 chr1 69147164 69147455 -173516898 + AluSx SINE Alu 5 301 -11 480 262 76 35 chr1 69147483 69147628 -173516725 + MER5B DNA MER1_type 1 151 -27 3432 210 26 48 chr1 69147663 69148653 -173515700 - LTR5 LTR ERVK 0 969 1 2196 72 33 10 chr1 69148658 69148962 -173515391 - AluSp SINE Alu -2 311 1 2353 70 0 3 chr1 69149713 69150012 -173514341 + AluY SINE Alu 1 298 -13 1834 130 0 29 chr1 69150033 69150349 -173514004 - AluSq SINE Alu -6 307 1 229 316 86 34 chr1 69150864 69150981 -173513372 + L2 LINE L2 3150 3272 0 585 275 63 19 chr1 69151083 69151290 -173513063 + MIR SINE MIR 31 246 -16 822 146 8 0 chr1 69151339 69151478 -173512875 + L1M4 LINE L1 5662 5802 -363 2369 108 19 34 chr1 69151540 69151918 -173512435 + L1PB3 LINE L1 5783 6154 0 275 243 37 77 chr1 69152962 69153025 -173511328 + MIR SINE MIR 12 76 -134 2080 92 26 7 chr1 69153025 69153331 -173511022 + AluSp SINE Alu 1 312 -1 275 243 37 77 chr1 69153331 69153414 -173510939 + MIR SINE MIR 76 149 -61 2057 114 3 0 chr1 69153730 69154019 -173510334 - AluSx SINE Alu -22 290 1 1922 139 3 7 chr1 69154121 69154430 -173509923 - AluJb SINE Alu -4 308 1 418 257 156 17 chr1 69154781 69154960 -173509393 - MIR3 SINE MIR -2 206 3 217 193 32 86 chr1 69155229 69155416 -173508937 + (CACAC)n Simple_repeat Simple_repeat 1 177 0 1410 134 157 15 chr1 69155878 69156139 -173508214 - AluY SINE Alu -3 298 1 249 252 17 26 chr1 69156182 69156297 -173508056 - AluSp/q SINE Alu -13 290 177 467 342 43 7 chr1 69157608 69157886 -173506467 + MER1B DNA MER1_type 2 289 -50 1118 130 0 0 chr1 69158628 69158790 -173505563 + AluSp SINE Alu 132 293 -20 725 181 16 0 chr1 69158802 69158929 -173505424 + FRAM SINE Alu 30 158 -18 22 0 0 0 chr1 69159102 69159124 -173505229 + GC_rich Low_complexity Low_complexity 1 22 0 1587 151 11 11 chr1 69159347 69159626 -173504727 - AluJb SINE Alu -33 279 1 365 246 109 29 chr1 69159626 69159764 -173504589 - HAL1 LINE L1 -22 2485 2337 1067 156 6 6 chr1 69159767 69159946 -173504407 - AluSg/x SINE Alu -48 264 86 354 248 117 0 chr1 69159946 69160091 -173504262 - HAL1 LINE L1 -159 2348 2187 784 280 9 5 chr1 69161040 69161254 -173503099 - AluSq SINE Alu -96 217 3 360 225 169 38 chr1 69161365 69161468 -173502885 + Charlie4a DNA MER1_type 149 237 -1724 2007 113 7 3 chr1 69161468 69161761 -173502592 + AluSx SINE Alu 1 294 -18 288 0 0 0 chr1 69161762 69161794 -173502559 + (TA)n Simple_repeat Simple_repeat 1 32 0 360 225 169 38 chr1 69161794 69161848 -173502505 + Charlie4a DNA MER1_type 236 329 -179 664 150 71 0 chr1 69161873 69161986 -173502367 - FLAM_C SINE Alu -10 123 3 1845 109 18 4 chr1 69161986 69162260 -173502093 + AluSx SINE Alu 30 307 -5 374 279 82 14 chr1 69162536 69162683 -173501670 + AluJb SINE Alu 134 290 -12 35 0 0 0 chr1 69162939 69162974 -173501379 + GC_rich Low_complexity Low_complexity 1 35 0 1045 144 6 0 chr1 69163110 69163270 -173501083 - AluSx SINE Alu -151 161 1 1739 167 3 3 chr1 69163273 69163567 -173500786 - AluJo SINE Alu -17 295 2 2049 123 3 0 chr1 69163595 69163887 -173500466 + AluSq SINE Alu 1 293 -20 2326 76 0 10 chr1 69163887 69164191 -173500162 + AluY SINE Alu 1 301 -10 296 248 90 35 chr1 69164354 69164499 -173499854 + L1ME LINE L1 5501 5653 -468 1791 116 47 14 chr1 69164646 69164923 -173499430 + AluSx SINE Alu 1 286 -26 335 85 38 113 chr1 69165254 69165360 -173498993 + AluSg/x SINE Alu 170 267 -33 1054 177 0 0 chr1 69165380 69165555 -173498798 + AluJb SINE Alu 120 294 -18 204 97 0 0 chr1 69165572 69165603 -173498750 + (CA)n Simple_repeat Simple_repeat 2 32 0 183 277 0 0 chr1 69165688 69165735 -173498618 - MIR SINE MIR -56 206 160 1334 76 52 48 chr1 69165761 69165971 -173498382 - AluSq SINE Alu -14 299 89 249 240 0 0 chr1 69166176 69166251 -173498102 + T-rich Low_complexity Low_complexity 1 75 0 1057 148 0 6 chr1 69166766 69166942 -173497411 - AluSg/x SINE Alu -1 311 137 185 305 75 48 chr1 69167001 69167188 -173497165 + L2 LINE L2 2992 3183 -89 1798 143 0 0 chr1 69167313 69167578 -173496775 - AluSx SINE Alu -46 266 2 353 283 67 119 chr1 69167616 69167987 -173496366 + L2 LINE L2 2914 3265 -7 1804 94 47 4 chr1 69168225 69168480 -173495873 + LTR8 LTR ERV1 1 266 -425 1459 81 0 14 chr1 69168682 69168892 -173495461 - AluY SINE Alu -104 207 1 1879 101 0 30 chr1 69168892 69169152 -173495201 + LTR35 LTR ERV1 166 419 -199 566 179 9 36 chr1 69169185 69169297 -173495056 + LTR35 LTR ERV1 510 618 0 247 158 11 116 chr1 69169310 69169359 -173494994 - L1MC5 LINE L1 -263 7698 7662 2193 57 0 13 chr1 69169359 69169659 -173494694 - AluY SINE Alu -15 296 1 247 158 11 116 chr1 69169659 69169704 -173494649 - L1MC5 LINE L1 -299 7662 7614 2032 120 0 23 chr1 69169704 69170013 -173494340 - AluSx SINE Alu -8 304 3 469 139 0 0 chr1 69170013 69170092 -173494261 - AluJ/FRAM SINE Alu -6 306 228 3583 89 34 77 chr1 69170093 69170680 -173493673 - LTR8 LTR ERV1 -8 683 122 380 94 0 19 chr1 69170665 69170718 -173493635 - AluJ/FLAM SINE Alu -235 67 16 * 199 233 47 24 chr1 69170801 69170857 -173493496 + MIR SINE MIR 63 121 -87 219 242 94 55 chr1 69170932 69171060 -173493293 - L2 LINE L2 -189 3124 2992 333 129 3 18 chr1 69171075 69171140 -173493213 + Alu SINE Alu 1 51 -249 1623 157 4 4 chr1 69171273 69171568 -173492785 + AluJb SINE Alu 16 310 0 2208 89 0 17 chr1 69171735 69172037 -173492316 + AluSx SINE Alu 1 297 -15 203 331 31 47 chr1 69172186 69172313 -173492040 + MIR SINE MIR 117 241 -21 2236 94 3 19 chr1 69172514 69172832 -173491521 - AluSp SINE Alu 0 313 1 225 0 0 0 chr1 69172978 69173003 -173491350 + (TG)n Simple_repeat Simple_repeat 2 26 0 969 168 0 0 chr1 69173135 69173146 -173491207 - AluJb SINE Alu -9 303 293 482 31 16 0 chr1 69173146 69173210 -173491143 + (TG)n Simple_repeat Simple_repeat 2 66 0 969 168 0 0 chr1 69173210 69173365 -173490988 - AluJb SINE Alu -18 294 137 812 143 0 0 chr1 69173769 69173895 -173490458 - AluJb SINE Alu -185 127 2 2156 102 0 0 chr1 69174207 69174500 -173489853 + AluSx SINE Alu 1 293 -19 1058 154 0 0 chr1 69174599 69174761 -173489592 + FRAM SINE Alu 1 162 -4 484 183 217 9 chr1 69175046 69175161 -173489192 + MIR SINE MIR 17 155 -107 2152 112 0 0 chr1 69175228 69175524 -173488829 + AluSx SINE Alu 1 296 -16 1747 121 7 29 chr1 69175526 69175838 -173488515 + AluSx SINE Alu 10 315 0 296 297 98 55 chr1 69176041 69176277 -173488076 - L3 LINE CR1 -49 1528 1283 539 273 134 109 chr1 69176334 69177274 -173487079 - L2 LINE L2 0 3272 2203 2164 89 7 3 chr1 69177274 69177578 -173486775 - AluSx SINE Alu -1 311 7 539 273 134 109 chr1 69177578 69177769 -173486584 - L2 LINE L2 -1069 2203 2018 182 294 33 65 chr1 69177769 69177953 -173486400 - L2 LINE L2 -1436 1878 1701 * 236 295 108 110 chr1 69177936 69178363 -173485990 - L3 LINE CR1 -324 1253 828 224 209 0 0 chr1 69178445 69178488 -173485865 - MIR SINE MIR -106 156 114 31 0 0 0 chr1 69178601 69178632 -173485721 + AT_rich Low_complexity Low_complexity 1 31 0 1317 155 182 12 chr1 69178688 69178946 -173485407 - AluSx SINE Alu 0 302 1 1380 272 120 75 chr1 69179013 69179211 -173485142 - L2 LINE L2 0 3313 3125 1715 156 10 3 chr1 69179211 69179506 -173484847 + AluJb SINE Alu 1 297 -15 2115 91 3 7 chr1 69179506 69179829 -173484524 + AluSx SINE Alu 1 322 0 1380 272 120 75 chr1 69179829 69180333 -173484020 - L2 LINE L2 -188 3125 2645 2278 71 0 13 chr1 69180333 69180642 -173483711 + AluSp SINE Alu 9 313 0 1380 272 120 75 chr1 69180642 69181188 -173483165 - L2 LINE L2 -668 2645 2005 650 169 35 49 chr1 69181206 69181348 -173483005 + AluJb SINE Alu 2 141 -171 2275 81 3 0 chr1 69181348 69181645 -173482708 + AluSx SINE Alu 1 298 -14 1210 169 28 98 chr1 69181647 69181973 -173482380 + AluJb SINE Alu 1 303 -9 326 259 49 0 chr1 69181977 69182058 -173482295 - L2 LINE L2 -1323 1991 1907 485 244 24 102 chr1 69182635 69182676 -173481677 - MER5A DNA MER1_type 0 189 146 2323 86 0 3 chr1 69182676 69182979 -173481374 + AluSq SINE Alu 1 302 -11 485 244 24 102 chr1 69182979 69183142 -173481211 - MER5A DNA MER1_type -43 146 1 284 48 24 24 chr1 69183169 69183211 -173481142 + L2 LINE L2 3262 3303 -10 284 295 12 104 chr1 69184045 69184218 -173480135 - L2 LINE L2 0 3272 3116 1053 170 0 0 chr1 69184364 69184535 -173479818 + FRAM SINE Alu 6 176 0 366 153 46 40 chr1 69184553 69184651 -173479702 + AluS SINE Alu 7 72 -229 2265 88 13 0 chr1 69184689 69184997 -173479356 + AluSp SINE Alu 1 312 -1 2256 63 7 10 chr1 69185137 69185438 -173478915 + AluY SINE Alu 1 300 -11 2058 125 13 0 chr1 69186203 69186506 -173477847 + AluSx SINE Alu 3 309 -3 1209 113 18 0 chr1 69186685 69186853 -173477500 + AluSx SINE Alu 1 171 -141 1911 119 31 3 chr1 69187731 69188024 -173476329 - AluSq SINE Alu -12 301 1 22 0 0 0 chr1 69188063 69188085 -173476268 + AT_rich Low_complexity Low_complexity 1 22 0 1627 149 71 3 chr1 69188215 69188497 -173475856 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr1 69189516 69189538 -173474815 + AT_rich Low_complexity Low_complexity 1 22 0 2462 55 10 3 chr1 69189604 69189912 -173474441 + AluY SINE Alu 1 310 -1 813 146 8 8 chr1 69189923 69190053 -173474300 + FLAM_C SINE Alu 1 130 -3 2106 109 0 3 chr1 69190075 69190368 -173473985 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr1 69190377 69190407 -173473946 + AT_rich Low_complexity Low_complexity 1 30 0 1877 154 7 0 chr1 69190462 69190767 -173473586 + AluJo SINE Alu 1 307 -5 2133 106 0 0 chr1 69190870 69191162 -173473191 + AluSx SINE Alu 1 292 -20 1898 120 0 0 chr1 69191387 69191661 -173472692 + AluSx SINE Alu 11 284 -28 1526 158 41 10 chr1 69192342 69192633 -173471720 - AluJb SINE Alu -10 302 3 1756 132 56 0 chr1 69192892 69193179 -173471174 - AluJb SINE Alu -8 304 2 419 141 71 0 chr1 69193729 69193814 -173470539 - L1MB8 LINE L1 -5 6173 6083 2234 106 0 0 chr1 69194664 69194975 -173469378 - AluSx SINE Alu -1 311 1 2194 105 0 0 chr1 69196003 69196298 -173468055 + AluSg SINE Alu 1 295 -15 958 106 7 7 chr1 69197398 69197539 -173466814 + AluSq/x SINE Alu 11 151 -162 815 262 129 34 chr1 69197590 69197976 -173466377 - L1MEc LINE L1 -5944 452 30 1959 124 24 0 chr1 69198237 69198527 -173465826 - AluSg SINE Alu -13 297 1 233 116 0 23 chr1 69198643 69198686 -173465667 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 716 203 8 8 chr1 69198688 69198821 -173465532 - FLAM_A SINE Alu 0 133 1 22 56 0 0 chr1 69198850 69198886 -173465467 + AT_rich Low_complexity Low_complexity 1 36 0 217 267 78 22 chr1 69199316 69199406 -173464947 - MIR3 SINE MIR -21 187 93 979 174 0 73 chr1 69199531 69199750 -173464603 - AluJo SINE Alu -14 298 96 1964 138 0 3 chr1 69199774 69200064 -173464289 + AluJb SINE Alu 1 289 -23 1735 174 31 3 chr1 69200073 69200400 -173463953 - L1MC1 LINE L1 -26 6307 5972 2140 114 0 0 chr1 69200401 69200700 -173463653 - AluSx SINE Alu -13 299 1 1130 140 26 2 chr1 69200702 69200899 -173463454 - L1MC1 LINE L1 -310 5854 5654 1232 161 12 48 chr1 69201336 69201427 -173462926 + AluJo SINE Alu 41 134 -178 1497 177 28 7 chr1 69201427 69201715 -173462638 + AluJo SINE Alu 1 294 -18 1232 161 12 48 chr1 69201715 69201871 -173462482 + AluJo SINE Alu 134 279 -33 701 201 13 27 chr1 69201988 69202137 -173462216 - MLT2D LTR ERVL 0 414 268 870 178 0 6 chr1 69202162 69202336 -173462017 + AluJb SINE Alu 136 308 -4 181 313 48 24 chr1 69202630 69202713 -173461640 + L2 LINE L2 2747 2831 -483 700 212 94 6 chr1 69202815 69202985 -173461368 + MER5A DNA MER1_type 1 185 -4 1894 150 0 3 chr1 69203160 69203454 -173460899 - AluJb SINE Alu -17 295 3 1560 196 10 0 chr1 69203461 69203757 -173460596 - AluJo SINE Alu -13 299 1 1693 104 42 11 chr1 69203825 69204112 -173460241 + AluSx SINE Alu 5 300 -12 196 203 0 102 chr1 69204140 69204199 -173460154 + MER5B DNA MER1_type 1 53 -125 320 296 81 27 chr1 69205664 69205850 -173458503 + L1ME LINE L1 5482 5677 -444 2154 110 3 0 chr1 69205882 69206181 -173458172 - AluSx SINE Alu -12 300 1 2278 78 0 7 chr1 69206692 69206998 -173457355 + AluSg1 SINE Alu 1 304 -5 1293 149 21 0 chr1 69207324 69207559 -173456794 - AluJb SINE Alu -5 307 68 975 185 0 16 chr1 69207680 69207869 -173456484 + AluSg/x SINE Alu 87 272 -38 537 229 90 30 chr1 69207878 69208044 -173456309 - MIR SINE MIR -3 259 84 2156 102 6 16 chr1 69208131 69208444 -173455909 + AluSx SINE Alu 1 310 -2 2170 112 0 0 chr1 69208564 69208868 -173455485 - AluSx SINE Alu -8 304 1 1648 111 12 0 chr1 69208906 69209149 -173455204 - AluSx SINE Alu -62 250 5 1964 117 19 3 chr1 69209182 69209489 -173454864 - AluSx SINE Alu 0 312 1 229 25 0 50 chr1 69209495 69209535 -173454818 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1946 109 29 0 chr1 69209537 69209813 -173454540 - AluSp SINE Alu -29 284 1 1153 182 4 50 chr1 69209813 69210055 -173454298 - AluJo SINE Alu -17 295 65 1240 124 21 5 chr1 69210097 69210290 -173454063 + AluSq SINE Alu 3 198 -115 1772 146 0 0 chr1 69210505 69210773 -173453580 - AluSx SINE Alu -44 268 1 709 153 63 0 chr1 69210785 69210896 -173453457 - FLAM_C SINE Alu -14 119 2 1657 186 0 0 chr1 69210975 69211260 -173453093 + AluJb SINE Alu 1 285 -27 26 0 0 0 chr1 69211260 69211286 -173453067 + AT_rich Low_complexity Low_complexity 1 26 0 5010 82 11 19 chr1 69211433 69211689 -173452664 + LTR8 LTR ERV1 1 258 -433 2182 93 10 16 chr1 69211689 69212000 -173452353 + AluSx SINE Alu 1 309 -3 5010 82 11 19 chr1 69212000 69212410 -173451943 + LTR8 LTR ERV1 258 661 -30 2718 55 3 6 chr1 69212414 69212759 -173451594 + LTR14A LTR ERVK 1 344 0 4164 84 10 1 chr1 69212759 69213377 -173450976 + HERVK14 LTR ERVK 1 661 -5284 237 159 14 58 chr1 69213727 69213796 -173450557 + AluSq/x SINE Alu 41 106 -196 1319 147 18 132 chr1 69213838 69214179 -173450174 + AluJb SINE Alu 1 302 0 300 127 89 25 chr1 69214208 69214287 -173450066 - L2 LINE L2 -355 2958 2875 342 261 39 8 chr1 69214389 69214519 -173449834 - L2 LINE L2 -639 2675 2542 2133 76 14 0 chr1 69215462 69215752 -173448601 + AluSp SINE Alu 1 294 -19 1924 64 4 11 chr1 69215775 69216040 -173448313 + AluSc SINE Alu 29 291 -18 334 125 36 0 chr1 69216588 69216644 -173447709 - AluSp/q SINE Alu -9 294 237 244 207 0 0 chr1 69216645 69216703 -173447650 + C-rich Low_complexity Low_complexity 1 58 0 301 294 171 29 chr1 69217144 69217314 -173447039 - HAL1 LINE L1 -1448 1059 866 754 124 25 106 chr1 69217529 69217690 -173446663 - AluJo SINE Alu -163 149 2 1512 97 174 37 chr1 69217693 69217991 -173446362 - L1MA3 LINE L1 0 6305 5967 1770 132 24 37 chr1 69217991 69218145 -173446208 - AluSx SINE Alu -20 292 142 2122 93 0 23 chr1 69218145 69218446 -173445907 - AluY SINE Alu -17 294 1 1770 132 24 37 chr1 69218446 69218587 -173445766 - AluSx SINE Alu -170 142 1 508 292 80 56 chr1 69218723 69219096 -173445257 - L1M4 LINE L1 -2964 3182 2801 734 182 16 0 chr1 69219144 69219265 -173445088 - FLAM_C SINE Alu -20 123 1 1138 153 49 14 chr1 69219358 69219581 -173444772 - AluJb SINE Alu -32 280 50 338 155 22 25 chr1 69219607 69219693 -173444660 + AluS SINE Alu 1 59 -243 394 301 64 91 chr1 69219763 69220202 -173444151 - HAL1 LINE L1 -1206 1301 875 2039 134 0 0 chr1 69221017 69221330 -173443023 - AluSq SINE Alu 0 313 1 2387 31 0 10 chr1 69221640 69221952 -173442401 - AluY SINE Alu 0 311 1 2325 155 81 46 chr1 69221957 69222129 -173442224 - L1MB2 LINE L1 -44 6127 5962 1969 130 0 7 chr1 69222129 69222428 -173441925 - AluSx SINE Alu -11 301 5 2325 155 81 46 chr1 69222428 69222752 -173441601 - L1MB2 LINE L1 -209 5962 5614 2203 108 0 7 chr1 69222752 69223059 -173441294 - AluSq SINE Alu -6 307 3 825 253 6 0 chr1 69223088 69223262 -173441091 - AluJb SINE Alu -19 293 119 293 200 0 0 chr1 69223262 69223317 -173441036 - L1MB2 LINE L1 -580 5591 5537 2074 124 0 13 chr1 69223383 69223690 -173440663 - AluSx SINE Alu -9 303 1 362 320 80 8 chr1 69223752 69223877 -173440476 - L2 LINE L2 -198 3074 2941 252 318 18 30 chr1 69224145 69224382 -173439971 + CT-rich Low_complexity Low_complexity 1 234 0 1277 143 0 47 chr1 69224752 69225031 -173439322 - AluSx SINE Alu -43 269 4 1666 151 14 18 chr1 69225049 69225334 -173439019 - AluJb SINE Alu -28 284 1 379 275 57 61 chr1 69225879 69226214 -173438139 + L1MDa LINE L1 1324 1535 -5324 412 313 88 40 chr1 69226320 69226569 -173437784 + L1MDa LINE L1 1749 2009 -4938 1127 253 6 92 chr1 69226580 69227030 -173437323 + L1MDa LINE L1 2217 2580 -738 2053 107 17 0 chr1 69227060 69227351 -173437002 - AluSp SINE Alu -17 296 1 1351 161 5 0 chr1 69228237 69228455 -173435898 - AluJb SINE Alu -93 219 1 23 0 0 0 chr1 69228966 69228989 -173435364 + AT_rich Low_complexity Low_complexity 1 23 0 235 270 0 63 chr1 69229756 69229882 -173434471 + C-rich Low_complexity Low_complexity 3 120 0 1526 264 79 48 chr1 69230625 69231399 -173432954 + HAL1 LINE L1 908 1705 -802 606 147 37 9 chr1 69231595 69231704 -173432649 + HY1 scRNA scRNA 1 112 0 2371 52 0 0 chr1 69231722 69232011 -173432342 + AluY SINE Alu 1 289 -22 684 148 35 9 chr1 69232174 69232289 -173432064 + AluJb SINE Alu 16 133 -179 1198 137 0 32 chr1 69232540 69232759 -173431594 + AluSc SINE Alu 1 212 -97 379 300 96 59 chr1 69233103 69233323 -173431030 - L1ME4a LINE L1 -254 5867 5640 5590 88 1 64 chr1 69233326 69234217 -173430136 - L1HS LINE L1 -2 6153 5319 2128 103 3 0 chr1 69234254 69234546 -173429807 + AluSp SINE Alu 1 293 -20 24 0 0 0 chr1 69234546 69234570 -173429783 + AT_rich Low_complexity Low_complexity 1 24 0 352 243 261 18 chr1 69234759 69234981 -173429372 + MER46C DNA MER2_type 9 284 -54 449 263 17 8 chr1 69235364 69235482 -173428871 + L2 LINE L2 3195 3313 0 941 201 0 0 chr1 69236079 69236233 -173428120 + AluJb SINE Alu 134 287 -25 255 125 0 0 chr1 69236351 69236391 -173427962 + (A)n Simple_repeat Simple_repeat 1 40 0 1095 149 59 72 chr1 69237282 69237327 -173427026 - MER20 DNA MER1_type 0 219 175 2356 105 0 0 chr1 69237327 69237622 -173426731 - AluSx SINE Alu -15 297 3 1095 149 59 72 chr1 69237622 69237797 -173426556 - MER20 DNA MER1_type -44 175 2 347 325 18 0 chr1 69238054 69238168 -173426185 - MIR SINE MIR -98 164 49 1896 162 0 25 chr1 69238174 69238376 -173425977 - AluJb SINE Alu -5 307 114 2369 91 57 25 chr1 69238376 69238729 -173425624 + THE1B LTR MaLR 1 364 0 1896 162 0 25 chr1 69238729 69238841 -173425512 - AluJb SINE Alu -198 114 1 1335 104 16 16 chr1 69239246 69239439 -173424914 + AluSg/x SINE Alu 111 303 -7 3511 108 119 76 chr1 69239603 69239794 -173424559 + MER4D LTR ERV1 1 182 -721 704 138 114 0 chr1 69239794 69239917 -173424436 + FLAM_C SINE Alu 2 138 -5 2241 120 0 0 chr1 69239917 69240217 -173424136 + AluSg SINE Alu 1 300 -10 3511 108 119 76 chr1 69240217 69240859 -173423494 + MER4D LTR ERV1 181 893 -10 231 147 0 0 chr1 69241093 69241127 -173423226 - LTR8 LTR ERV1 0 691 658 2623 51 36 3 chr1 69241127 69241460 -173422893 - LTR14A LTR ERVK 0 344 1 792 43 0 43 chr1 69241463 69241579 -173422774 - HERVK14 LTR ERVK 0 5945 5835 370 159 0 18 chr1 69241579 69241654 -173422699 - MER41C LTR ERV1 -493 61 1 12506 48 18 7 chr1 69241654 69243254 -173421099 - HERVK14 LTR ERVK -186 5759 4142 * 16608 52 3 2 chr1 69243243 69245317 -173419036 - HERVK14 LTR ERVK -3032 2913 839 671 0 0 0 chr1 69245424 69245498 -173418855 + AluYb8 SINE Alu 227 300 -18 1484 57 0 0 chr1 69245498 69245674 -173418679 + AluY SINE Alu 119 294 -17 26 0 0 0 chr1 69245715 69245741 -173418612 + AT_rich Low_complexity Low_complexity 1 26 0 2220 94 0 3 chr1 69245828 69246115 -173418238 + AluSc SINE Alu 3 288 -21 2140 114 23 13 chr1 69246122 69246429 -173417924 + AluSg SINE Alu 1 310 0 294 228 12 94 chr1 69246437 69246526 -173417827 + L1M LINE L1 5254 5325 -843 1910 124 0 35 chr1 69246526 69246655 -173417698 + AluSx SINE Alu 11 143 -163 2402 92 0 0 chr1 69246655 69246959 -173417394 + AluSx SINE Alu 1 304 -8 1910 124 0 35 chr1 69246959 69247135 -173417218 + AluSx SINE Alu 143 306 0 294 228 12 94 chr1 69247135 69247215 -173417138 + L1M LINE L1 5325 5410 -758 1434 180 45 72 chr1 69247305 69247707 -173416646 + MER89 LTR ERV1 3 414 -145 2314 78 3 3 chr1 69247707 69248016 -173416337 - AluSp SINE Alu 0 309 1 2012 135 17 0 chr1 69248017 69248306 -173416047 - AluSx SINE Alu -17 295 2 1434 180 45 72 chr1 69248306 69248371 -173415982 + MER89 LTR ERV1 413 559 0 1980 123 7 24 chr1 69248714 69249007 -173415346 + AluJb SINE Alu 4 291 -21 922 230 32 36 chr1 69249204 69249456 -173414897 - MLT1C LTR MaLR 0 467 217 1887 141 35 11 chr1 69249495 69249656 -173414697 - AluSx SINE Alu -22 290 118 230 0 33 0 chr1 69249656 69249686 -173414667 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1887 141 35 11 chr1 69249686 69249807 -173414546 - AluSx SINE Alu -194 118 1 738 248 69 15 chr1 69251320 69251522 -173412831 + MIR SINE MIR 36 248 -14 1838 139 37 10 chr1 69251657 69251951 -173412402 + AluJb SINE Alu 1 302 -10 2281 113 0 19 chr1 69252609 69252920 -173411433 - AluSg SINE Alu -4 306 2 1184 264 95 10 chr1 69253421 69253811 -173410542 - MLT1J LTR MaLR -50 461 39 1720 159 53 21 chr1 69254128 69254411 -173409942 - AluJb SINE Alu -20 292 1 2187 97 0 55 chr1 69254458 69254787 -173409566 - AluSx SINE Alu -1 311 1 916 205 78 39 chr1 69254788 69254993 -173409360 - AluJb SINE Alu 0 312 100 1404 108 19 38 chr1 69255117 69255330 -173409023 + AluSq SINE Alu 97 305 -8 457 174 130 0 chr1 69255330 69255422 -173408931 + AluSg/x SINE Alu 198 301 -9 225 94 0 0 chr1 69255438 69255470 -173408883 + (A)n Simple_repeat Simple_repeat 1 32 0 2480 75 3 0 chr1 69255685 69255980 -173408373 - AluSp SINE Alu -17 296 1 1466 114 18 23 chr1 69255990 69256209 -173408144 - AluSx SINE Alu -10 302 85 561 69 26 103 chr1 69256209 69256325 -173408028 - AluSc SINE Alu -61 248 142 449 109 0 0 chr1 69256448 69256512 -173407841 - AluSx SINE Alu -211 102 39 23 0 0 0 chr1 69256666 69256689 -173407664 + AT_rich Low_complexity Low_complexity 1 23 0 525 211 14 3 chr1 69257035 69257179 -173407174 + MER5A DNA MER1_type 9 189 0 2464 73 7 3 chr1 69257410 69257712 -173406641 - AluSp SINE Alu -10 303 1 336 296 22 37 chr1 69257760 69257902 -173406451 - MIR SINE MIR -67 141 32 2025 155 0 0 chr1 69259449 69259746 -173404607 - AluJb SINE Alu -15 297 1 547 262 83 12 chr1 69260426 69260594 -173403759 + MIR SINE MIR 35 214 -48 704 289 92 13 chr1 69260795 69261023 -173403330 + MIR SINE MIR 17 262 0 1916 139 14 7 chr1 69261443 69261599 -173402754 - AluJo SINE Alu -23 289 129 2288 108 3 0 chr1 69261599 69261895 -173402458 - AluSq SINE Alu -16 297 1 1916 139 14 7 chr1 69261895 69262019 -173402334 - AluJo SINE Alu -183 129 7 992 90 0 8 chr1 69262140 69262273 -173402080 - FLAM_C SINE Alu 0 133 2 351 302 181 5 chr1 69262651 69262856 -173401497 + L2 LINE L2 2981 3221 -51 945 199 0 0 chr1 69263201 69263357 -173400996 - FRAM SINE Alu -10 166 11 2238 118 3 0 chr1 69263374 69263679 -173400674 - AluSq SINE Alu -7 306 1 414 0 0 0 chr1 69264183 69264229 -173400124 + (CA)n Simple_repeat Simple_repeat 1 46 0 643 268 116 5 chr1 69264497 69264687 -173399666 + MIR SINE MIR 38 248 -14 241 253 81 30 chr1 69265692 69265791 -173398562 - MIR SINE MIR -32 230 127 538 195 158 101 chr1 69265975 69266273 -173398080 + MLT1H LTR MaLR 235 549 0 322 283 81 23 chr1 69266809 69266982 -173397371 - MIR3 SINE MIR -3 205 23 377 292 53 48 chr1 69268251 69268467 -173395886 - MIR SINE MIR -26 236 25 1863 80 0 13 chr1 69269369 69269606 -173394747 - AluSx SINE Alu -75 237 4 341 296 64 16 chr1 69269809 69269934 -173394419 + L2 LINE L2 3141 3271 -1 384 279 57 25 chr1 69270033 69270155 -173394198 - MIR SINE MIR -70 192 67 264 272 61 68 chr1 69272511 69272658 -173391695 - MIR SINE MIR -35 227 82 269 241 97 11 chr1 69273818 69273975 -173390378 + L1MC/D LINE L1 5277 5445 -887 206 61 0 30 chr1 69274059 69274092 -173390261 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1047 83 7 0 chr1 69274092 69274236 -173390117 - MER107 DNA MER1_type -52 145 1 187 280 90 30 chr1 69274260 69274360 -173389993 - MIR SINE MIR -142 120 15 1092 113 11 92 chr1 69274791 69274976 -173389377 - AluSx SINE Alu -139 173 4 2440 82 3 3 chr1 69274989 69275293 -173389060 - AluSg SINE Alu -6 304 1 822 132 16 0 chr1 69275294 69275415 -173388938 - AluJo/FLAM SINE Alu -183 129 7 992 90 0 8 chr1 69275536 69275669 -173388684 - FLAM_C SINE Alu 0 133 2 351 302 181 5 chr1 69276047 69276252 -173388101 + L2 LINE L2 2981 3221 -51 945 199 0 0 chr1 69276598 69276754 -173387599 - FRAM SINE Alu -10 166 11 2243 118 3 0 chr1 69276771 69277076 -173387277 - AluSq SINE Alu -7 306 1 1293 113 18 0 chr1 69277296 69277464 -173386889 - AluSx SINE Alu -141 171 1 2212 125 13 0 chr1 69277643 69277946 -173386407 - AluSx SINE Alu -3 309 3 2398 63 7 10 chr1 69278711 69279012 -173385341 - AluY SINE Alu -11 300 1 2296 87 16 7 chr1 69279153 69279462 -173384891 - AluSp SINE Alu -1 312 1 288 110 23 43 chr1 69279500 69279583 -173384770 - Alu SINE Alu -250 53 11 1777 161 45 42 chr1 69279618 69279797 -173384556 - AluJo SINE Alu 0 312 130 2484 77 0 0 chr1 69279797 69280094 -173384259 - AluSx SINE Alu -14 298 2 1777 161 45 42 chr1 69280094 69280225 -173384128 - AluJo SINE Alu -182 130 1 2451 85 0 7 chr1 69280234 69280540 -173383813 - AluSx SINE Alu -8 304 1 189 254 119 0 chr1 69280653 69280720 -173383633 - L2 LINE L2 -5 3308 3234 228 329 13 0 chr1 69280850 69280929 -173383424 + MIR3 SINE MIR 86 165 -43 2103 183 49 29 chr1 69281209 69281662 -173382691 + LTR40b LTR ERVL 1 462 0 2344 98 7 0 chr1 69281964 69282260 -173382093 + AluSx SINE Alu 1 298 -14 365 246 105 94 chr1 69282298 69282469 -173381884 + L3 LINE CR1 1389 1561 -16 2384 102 0 13 chr1 69283650 69283964 -173380389 - AluSg SINE Alu 0 310 1 321 248 120 45 chr1 69284084 69284217 -173380136 - MIR SINE MIR -111 151 9 2127 141 16 0 chr1 69284490 69284794 -173379559 - AluSx SINE Alu -3 309 1 2144 96 13 54 chr1 69284806 69285120 -173379233 - AluSx SINE Alu -8 304 4 2506 76 3 3 chr1 69285133 69285437 -173378916 - AluSg SINE Alu -6 304 1 676 158 18 0 chr1 69285658 69285772 -173378581 - AluJb SINE Alu -7 305 190 473 279 87 12 chr1 69285810 69285891 -173378462 + MIR SINE MIR 90 164 -98 207 31 0 31 chr1 69285891 69285923 -173378430 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1691 169 32 21 chr1 69285923 69286202 -173378151 - AluJb SINE Alu -30 282 1 473 279 87 12 chr1 69286202 69286225 -173378128 + MIR SINE MIR 164 184 -78 1401 89 138 5 chr1 69286225 69286428 -173377925 - MER30 DNA MER1_type 0 230 1 473 279 87 12 chr1 69286428 69286482 -173377871 + MIR SINE MIR 184 262 0 2250 115 10 0 chr1 69286631 69286935 -173377418 - AluSp SINE Alu -6 307 1 2351 114 0 0 chr1 69287333 69287640 -173376713 - AluSx SINE Alu -5 307 1 492 312 51 23 chr1 69288297 69288512 -173375841 + MIR SINE MIR 6 226 -36 710 259 200 35 chr1 69288874 69289383 -173374970 - L2 LINE L2 -2 3311 2729 2087 155 0 0 chr1 69289523 69289827 -173374526 - AluJb SINE Alu -6 306 3 293 287 70 28 chr1 69289835 69289978 -173374375 + MIR SINE MIR 49 197 -65 70 33 0 0 chr1 69289985 69290076 -173374277 + AT_rich Low_complexity Low_complexity 1 91 0 411 229 0 0 chr1 69290534 69290678 -173373675 + CT-rich Low_complexity Low_complexity 2 145 0 2176 130 0 10 chr1 69291405 69291712 -173372641 - AluSx SINE Alu -8 304 1 184 330 155 25 chr1 69291739 69292094 -173372259 + L2 LINE L2 2569 2969 -345 244 308 86 34 chr1 69292227 69292344 -173372009 + L2 LINE L2 3150 3272 0 609 276 59 20 chr1 69292426 69292653 -173371700 + MIR SINE MIR 19 246 -16 801 137 8 0 chr1 69292702 69292841 -173371512 + L1M4 LINE L1 5662 5802 -365 2410 103 19 34 chr1 69292903 69293281 -173371072 + L1PB3 LINE L1 5783 6154 0 269 251 48 103 chr1 69294325 69294388 -173369965 + MIR SINE MIR 12 77 -133 2284 88 26 3 chr1 69294388 69294693 -173369660 + AluSp SINE Alu 1 312 -1 269 251 48 103 chr1 69294693 69294776 -173369577 + MIR SINE MIR 77 149 -61 2197 114 3 0 chr1 69295094 69295383 -173368970 - AluSx SINE Alu -22 290 1 2074 139 3 7 chr1 69295485 69295794 -173368559 - AluJb SINE Alu -4 308 1 448 258 157 11 chr1 69296145 69296323 -173368030 - MIR3 SINE MIR -2 206 3 280 196 42 42 chr1 69296716 69296884 -173367469 + (CACAC)n Simple_repeat Simple_repeat 1 168 0 487 225 0 0 chr1 69297654 69297743 -173366610 - AluS SINE Alu -223 89 1 2168 118 0 7 chr1 69297772 69298069 -173366284 + AluSg SINE Alu 1 295 -15 316 331 22 29 chr1 69298179 69298315 -173366038 + MIR SINE MIR 107 241 -21 689 276 235 14 chr1 69299867 69300096 -173364257 - L2 LINE L2 0 3313 3136 666 294 11 6 chr1 69300096 69300273 -173364080 + MER5B DNA MER1_type 1 178 0 689 276 235 14 chr1 69300273 69300409 -173363944 - L2 LINE L2 -177 3136 2867 2199 123 3 16 chr1 69300620 69300936 -173363417 - AluSx SINE Alu 0 312 1 258 268 196 0 chr1 69301124 69301221 -173363132 + L2 LINE L2 3155 3270 -2 292 265 133 10 chr1 69302073 69302212 -173362141 - MIR SINE MIR -62 146 14 186 189 0 0 chr1 69302568 69302605 -173361748 + (CA)n Simple_repeat Simple_repeat 2 38 0 532 309 64 32 chr1 69302744 69302932 -173361421 - MER91A DNA MER1_type 0 196 3 2392 95 0 0 chr1 69303038 69303343 -173361010 - AluSx SINE Alu -7 305 1 475 189 54 7 chr1 69306067 69306215 -173358138 + GA-rich Low_complexity Low_complexity 2 156 0 313 325 193 37 chr1 69306287 69306530 -173357823 - L3 LINE CR1 -125 1452 1172 626 220 173 61 chr1 69306605 69306746 -173357607 + MIR SINE MIR 8 182 -80 2364 89 0 3 chr1 69306746 69307038 -173357315 + AluSq SINE Alu 1 291 -22 626 220 173 61 chr1 69307038 69307110 -173357243 + MIR SINE MIR 182 245 -17 281 363 88 25 chr1 69307271 69307431 -173356922 - L2 LINE L2 0 3272 3103 912 267 197 28 chr1 69307691 69308152 -173356201 + MLT1G LTR MaLR 52 590 0 459 322 80 25 chr1 69308256 69308495 -173355858 - L2 LINE L2 -463 2851 2600 627 81 0 0 chr1 69308566 69308652 -173355701 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2349 92 0 7 chr1 69308652 69308947 -173355406 - AluSq SINE Alu -20 293 1 396 0 0 0 chr1 69309451 69309495 -173354858 + (CA)n Simple_repeat Simple_repeat 1 44 0 621 274 116 5 chr1 69309763 69309953 -173354400 + MIR SINE MIR 38 248 -14 241 253 81 30 chr1 69310958 69311057 -173353296 - MIR SINE MIR -32 230 127 538 195 158 101 chr1 69311241 69311539 -173352814 + MLT1H LTR MaLR 235 549 0 322 283 81 23 chr1 69312075 69312248 -173352105 - MIR3 SINE MIR -3 205 23 428 317 48 29 chr1 69313517 69313730 -173350623 - MIR SINE MIR -26 236 25 1898 81 0 8 chr1 69314632 69314868 -173349485 - AluSx SINE Alu -75 237 4 341 296 64 16 chr1 69315072 69315197 -173349156 + L2 LINE L2 3141 3271 -1 384 279 57 25 chr1 69315296 69315418 -173348935 - MIR SINE MIR -70 192 67 264 272 61 68 chr1 69317769 69317916 -173346437 - MIR SINE MIR -35 227 82 272 241 97 11 chr1 69319075 69319232 -173345121 + L1MC/D LINE L1 5277 5445 -887 206 61 0 30 chr1 69319316 69319349 -173345004 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1034 90 7 0 chr1 69319349 69319493 -173344860 - MER107 DNA MER1_type -52 145 1 187 280 90 30 chr1 69319517 69319617 -173344736 - MIR SINE MIR -142 120 15 21 0 0 0 chr1 69319969 69319990 -173344363 + AT_rich Low_complexity Low_complexity 1 21 0 719 290 27 54 chr1 69320092 69320351 -173344002 + MIR SINE MIR 11 262 0 191 302 0 0 chr1 69320646 69320689 -173343664 + MIR SINE MIR 24 66 -196 266 337 12 0 chr1 69320742 69320828 -173343525 + MIR SINE MIR 176 262 0 193 374 154 11 chr1 69320860 69320951 -173343402 + L2 LINE L2 3169 3272 0 2453 76 0 20 chr1 69321000 69321302 -173343051 - AluY SINE Alu -15 296 1 1234 154 11 45 chr1 69321303 69321622 -173342731 - L1M3 LINE L1 -656 5524 5217 941 161 7 0 chr1 69321706 69321849 -173342504 - FRAM SINE Alu -24 152 9 2135 128 3 0 chr1 69321860 69322149 -173342204 - AluSx SINE Alu -12 300 11 370 209 0 0 chr1 69322158 69322225 -173342128 - L1M3 LINE L1 -1190 4956 4890 1065 146 4 71 chr1 69322227 69322453 -173341900 - L1MB8 LINE L1 -116 6062 5852 240 317 89 10 chr1 69323033 69323134 -173341219 + MIR SINE MIR 6 114 -148 396 0 0 0 chr1 69323315 69323359 -173340994 + (TG)n Simple_repeat Simple_repeat 1 44 0 2157 108 0 24 chr1 69323359 69323647 -173340706 - AluSx SINE Alu -31 281 1 299 246 18 82 chr1 69324026 69324136 -173340217 + LTR67 LTR ERVL 5 107 -450 266 230 10 90 chr1 69324177 69324277 -173340076 + LTR67 LTR ERVL 466 557 0 2092 94 0 60 chr1 69325392 69325710 -173338643 - AluSx SINE Alu -13 299 1 1961 151 40 0 chr1 69326794 69327092 -173337261 - AluJb SINE Alu -2 310 1 2278 96 0 50 chr1 69327187 69327510 -173336843 + AluSx SINE Alu 1 307 -5 596 224 206 19 chr1 69327533 69327747 -173336606 - MIR SINE MIR -1 261 8 690 142 0 9 chr1 69328403 69328509 -173335844 - U6 snRNA snRNA -2 105 1 337 174 0 58 chr1 69328509 69328578 -173335775 + MER5A DNA MER1_type 125 189 0 542 228 186 0 chr1 69328617 69328762 -173335591 - MER5A DNA MER1_type 0 189 18 435 332 82 10 chr1 69328813 69329009 -173335344 + MIR SINE MIR 35 244 -18 585 265 36 41 chr1 69329089 69329308 -173335045 - MIR SINE MIR -13 249 32 1628 166 3 42 chr1 69329308 69329597 -173334756 - AluJb SINE Alu -19 293 16 276 227 34 45 chr1 69329894 69329982 -173334371 + L2 LINE L2 3227 3313 0 400 310 149 12 chr1 69330585 69330840 -173333513 - L2 LINE L2 -43 3229 2940 199 359 54 0 chr1 69330931 69331023 -173333330 - L2 LINE L2 -540 2774 2678 182 294 101 50 chr1 69331291 69331410 -173332943 + L2 LINE L2 3127 3251 -21 302 337 11 0 chr1 69331422 69331514 -173332839 - MIR3 SINE MIR -5 203 111 475 308 48 62 chr1 69331798 69332025 -173332328 + MIR SINE MIR 2 225 -37 338 218 75 83 chr1 69332600 69332733 -173331620 - MIR SINE MIR -23 239 108 1533 167 84 17 chr1 69332737 69333081 -173331272 + MLT1A1 LTR MaLR 3 365 0 257 270 112 22 chr1 69333081 69333170 -173331183 - MIR SINE MIR -151 111 15 244 352 55 0 chr1 69333269 69333414 -173330939 - L2 LINE L2 -1866 1448 1296 1353 128 43 53 chr1 69333848 69334118 -173330235 + MER33 DNA MER1_type 24 292 -2293 2228 134 0 3 chr1 69334118 69334425 -173329928 - AluSx SINE Alu -4 308 3 1353 128 43 53 chr1 69334425 69334458 -173329895 + MER33 DNA MER1_type 292 324 0 345 280 54 20 chr1 69335040 69335221 -173329132 + MIR SINE MIR 24 212 -50 2341 96 0 7 chr1 69335561 69335862 -173328491 - AluSx SINE Alu -13 299 1 250 282 29 39 chr1 69336071 69336174 -173328179 - MIR SINE MIR -50 212 111 1840 160 0 17 chr1 69336249 69336536 -173327817 - AluJo SINE Alu -25 287 6 284 256 0 24 chr1 69336827 69336909 -173327444 - AluJ/FRAM SINE Alu -1 301 222 30 0 0 0 chr1 69336947 69336977 -173327376 + AT_rich Low_complexity Low_complexity 1 30 0 2191 109 10 0 chr1 69337457 69337750 -173326603 + AluSx SINE Alu 6 301 -11 646 227 32 56 chr1 69337944 69338160 -173326193 - Charlie8 DNA MER1_type -2195 222 12 1447 216 45 22 chr1 69339276 69339633 -173324720 - MLT1A1 LTR MaLR 0 365 1 185 296 84 0 chr1 69339684 69339755 -173324598 - MIR SINE MIR -66 196 120 438 279 130 0 chr1 69339833 69339987 -173324366 - MIR SINE MIR -3 259 86 303 331 93 13 chr1 69340403 69340554 -173323799 + MIR3 SINE MIR 18 180 -28 183 205 51 0 chr1 69340963 69341002 -173323351 - L2 LINE L2 -213 3059 3019 363 289 200 0 chr1 69341103 69341238 -173323115 - MIR SINE MIR -95 167 6 592 280 56 35 chr1 69341420 69341652 -173322701 + MIR SINE MIR 12 248 -14 2069 154 85 13 chr1 69342240 69342687 -173321666 - Charlie4a DNA MER1_type -2 506 28 1686 143 73 19 chr1 69343231 69343546 -173320807 + MER44D DNA MER2_type 8 609 0 230 367 83 0 chr1 69343613 69343722 -173320631 - MIR SINE MIR -82 180 63 2128 58 4 0 chr1 69343857 69344118 -173320235 + L1PA8 LINE L1 5904 6165 -7 2250 88 3 3 chr1 69344241 69344558 -173319795 - AluSx SINE Alu 0 317 1 294 356 35 17 chr1 69345344 69345518 -173318835 - MIR3 SINE MIR -30 178 2 * 582 263 32 47 chr1 69345517 69345707 -173318646 + MIR SINE MIR 1 187 -75 194 203 31 109 chr1 69345838 69345902 -173318451 - MIR SINE MIR -63 145 87 508 171 23 0 chr1 69345923 69346011 -173318342 + AluJb SINE Alu 211 300 -12 184 304 0 0 chr1 69346176 69346232 -173318121 + L2 LINE L2 3217 3272 0 293 271 136 17 chr1 69346695 69346813 -173317540 + MIR3 SINE MIR 11 142 -66 310 219 0 16 chr1 69347007 69347071 -173317282 - L2 LINE L2 -5 3267 3205 193 317 63 70 chr1 69347145 69347454 -173316899 - L2 LINE L2 -189 3083 2778 418 202 173 0 chr1 69348043 69348147 -173316206 + L2 LINE L2 3188 3309 -4 224 155 99 84 chr1 69349894 69349965 -173314388 - MIR3 SINE MIR -46 162 91 2162 95 27 0 chr1 69350184 69350480 -173313873 - AluSx SINE Alu -8 304 1 185 339 0 15 chr1 69350568 69350633 -173313720 - MIR SINE MIR -83 179 116 496 267 20 95 chr1 69350930 69351072 -173313281 - Charlie8 DNA MER1_type -65 276 166 2171 102 14 0 chr1 69351072 69351365 -173312988 + AluSx SINE Alu 1 297 -15 496 267 20 95 chr1 69351365 69351518 -173312835 - Charlie8 DNA MER1_type -175 166 3 417 275 48 33 chr1 69351528 69351710 -173312643 - MIR SINE MIR -52 210 30 1651 144 172 31 chr1 69352427 69352781 -173311572 - MER4A LTR ERV1 0 664 261 555 89 89 0 chr1 69352781 69352871 -173311482 - MER4A LTR ERV1 -566 98 1 311 251 201 30 chr1 69352871 69353042 -173311311 - MIR SINE MIR -29 233 37 251 167 14 111 chr1 69353183 69353218 -173311135 + MER63C DNA MER1_type 1 27 -903 2532 70 3 0 chr1 69353218 69353518 -173310835 + AluSp SINE Alu 3 303 -10 251 167 14 111 chr1 69353518 69353552 -173310801 + MER63C DNA MER1_type 27 63 -867 996 178 13 48 chr1 69353552 69353783 -173310570 + MER82 DNA MER2_type 1 223 -430 * 1123 176 66 4 chr1 69353756 69354012 -173310341 + MER63C DNA MER1_type 253 524 -406 595 205 0 0 chr1 69354016 69354128 -173310225 - L1MC/D LINE L1 -668 5691 5580 1678 158 69 14 chr1 69354129 69354271 -173310082 + AluJb SINE Alu 3 136 -176 2500 86 0 0 chr1 69354271 69354573 -173309780 + AluSq SINE Alu 1 302 -11 1678 158 69 14 chr1 69354573 69354721 -173309632 + AluJb SINE Alu 136 309 -3 401 129 14 0 chr1 69354733 69354803 -173309550 + A-rich Low_complexity Low_complexity 3 73 0 874 175 47 73 chr1 69354803 69354837 -173309516 - L1MC/D LINE L1 -767 5592 5559 2381 98 7 0 chr1 69354837 69355143 -173309210 - AluSp SINE Alu -5 308 1 874 175 47 73 chr1 69355143 69355342 -173309011 - L1MC/D LINE L1 -800 5559 5365 883 150 0 0 chr1 69355342 69355495 -173308858 + MER63C DNA MER1_type 778 930 0 784 265 68 49 chr1 69356048 69356414 -173307939 - MLT1H1 LTR MaLR -182 373 1 2393 86 7 0 chr1 69356441 69356742 -173307611 + AluSg SINE Alu 1 303 -7 2064 146 13 7 chr1 69356772 69357080 -173307273 - AluJb SINE Alu -2 310 1 1002 102 7 0 chr1 69357101 69357247 -173307106 + MLT1C LTR MaLR 1 147 -320 5252 132 122 27 chr1 69357247 69358305 -173306048 - MER52C LTR ERV1 0 1278 121 1636 127 93 33 chr1 69358333 69358633 -173305720 + MLT1C LTR MaLR 144 461 -6 2798 237 65 17 chr1 69358638 69359498 -173304855 + L1ME3A LINE L1 5265 6165 -5 2145 123 0 26 chr1 69359516 69359818 -173304535 + AluSx SINE Alu 1 294 -18 2292 120 3 0 chr1 69359828 69360137 -173304216 + AluSx SINE Alu 1 310 -2 24 53 0 0 chr1 69360281 69360319 -173304034 + AT_rich Low_complexity Low_complexity 1 38 0 181 246 148 16 chr1 69360404 69360465 -173303888 + L3 LINE CR1 701 769 -808 230 368 126 11 chr1 69360501 69360675 -173303678 + L2 LINE L2 2866 3059 -213 1350 233 122 56 chr1 69360679 69361178 -173303175 + MLT1F1 LTR MaLR 11 567 0 1744 172 6 49 chr1 69361213 69361391 -173302962 - AluJb SINE Alu 0 312 153 2150 76 65 10 chr1 69361391 69361681 -173302672 - AluSp SINE Alu -7 306 1 1744 172 6 49 chr1 69361681 69361828 -173302525 - AluJb SINE Alu -159 153 1 966 201 6 17 chr1 69362081 69362255 -173302098 - FAM SINE Alu -3 172 1 697 322 145 32 chr1 69362280 69362806 -173301547 - L2 LINE L2 -749 2565 2100 1826 159 3 14 chr1 69362806 69363122 -173301231 + AluJb SINE Alu 1 313 0 697 322 145 32 chr1 69363122 69363159 -173301194 - L2 LINE L2 -1214 2100 2069 1628 214 19 32 chr1 69363159 69363529 -173300824 + MLT1A1 LTR MaLR 1 365 0 697 322 145 32 chr1 69363529 69363562 -173300791 - L2 LINE L2 -1245 2069 1898 1405 203 150 86 chr1 69363567 69364083 -173300270 + MLT1G LTR MaLR 1 518 -72 2050 119 0 36 chr1 69364083 69364385 -173299968 + AluSq SINE Alu 1 291 -22 1405 203 150 86 chr1 69364385 69364448 -173299905 + MLT1G LTR MaLR 518 576 -14 258 311 38 9 chr1 69364462 69364568 -173299785 - L2 LINE L2 -1418 1896 1788 210 326 200 30 chr1 69364888 69365250 -173299103 - L2 LINE L2 -2335 979 680 2449 123 71 20 chr1 69365250 69365289 -173299064 - MSTA LTR MaLR 0 428 392 2432 88 3 0 chr1 69365289 69365594 -173298759 + AluSp SINE Alu 1 306 -7 2449 123 71 20 chr1 69365594 69365961 -173298392 - MSTA LTR MaLR -36 392 1 210 326 200 30 chr1 69365961 69366273 -173298080 - L2 LINE L2 -2634 680 190 1696 139 8 8 chr1 69366301 69366552 -173297801 - AluSx SINE Alu -15 297 47 1929 88 7 4 chr1 69366626 69366899 -173297454 - L1PA13 LINE L1 0 6163 5890 294 276 64 57 chr1 69367659 69367828 -173296525 - MIR SINE MIR -49 159 9 391 246 64 45 chr1 69369424 69369534 -173294819 + MIR SINE MIR 99 210 -52 341 281 0 0 chr1 69370052 69370134 -173294219 + MIR SINE MIR 18 99 -163 1465 158 183 176 chr1 69370134 69370171 -173294182 - MLT1A1 LTR MaLR 0 396 361 2023 160 0 13 chr1 69370171 69370478 -173293875 + AluJo SINE Alu 1 303 -9 1465 158 183 176 chr1 69370478 69370749 -173293604 - MLT1A1 LTR MaLR -35 361 82 2267 120 3 0 chr1 69370749 69371050 -173293303 - AluSx SINE Alu -10 302 1 1465 158 183 176 chr1 69371050 69371133 -173293220 - MLT1A1 LTR MaLR -314 82 1 620 237 7 22 chr1 69371141 69371276 -173293077 + MIR SINE MIR 111 243 -19 470 265 76 0 chr1 69372179 69372311 -173292042 - MIR SINE MIR -71 191 50 665 164 7 0 chr1 69372546 69372686 -173291667 + (TCCA)n Simple_repeat Simple_repeat 4 144 0 720 195 0 0 chr1 69372714 69372878 -173291475 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 2398 99 0 7 chr1 69373648 69373951 -173290402 - AluSx SINE Alu -11 301 1 325 309 75 52 chr1 69374451 69374758 -173289595 - L2 LINE L2 -339 2975 2662 273 314 191 27 chr1 69374957 69375177 -173289176 - L2 LINE L2 -25 3247 2992 438 254 81 52 chr1 69375507 69375532 -173288821 + MIR SINE MIR 8 31 -231 2464 84 3 0 chr1 69375532 69375843 -173288510 + AluSx SINE Alu 1 312 0 438 254 81 52 chr1 69375843 69375990 -173288363 + MIR SINE MIR 31 185 -77 1252 224 251 40 chr1 69375992 69376521 -173287832 + LTR50 LTR ERVL 1 697 -98 2273 157 6 8 chr1 69376521 69376884 -173287469 + MLT1A1 LTR MaLR 4 365 0 1252 224 251 40 chr1 69376884 69377010 -173287343 + LTR50 LTR ERVL 697 795 0 331 268 89 8 chr1 69377087 69377210 -173287143 - L2 LINE L2 0 3272 3140 181 319 35 53 chr1 69377408 69377577 -173286776 + L2 LINE L2 3148 3313 0 * 354 321 0 18 chr1 69377571 69377683 -173286670 - L2 LINE L2 0 3313 3204 1738 127 52 70 chr1 69378369 69378410 -173285943 - THE1C LTR MaLR 0 375 335 2444 92 3 0 chr1 69378410 69378714 -173285639 + AluSp SINE Alu 1 305 -8 1738 127 52 70 chr1 69378714 69379041 -173285312 - THE1C LTR MaLR -40 335 14 989 183 84 0 chr1 69379386 69379577 -173284776 - MER3 DNA MER1_type -1 208 2 602 190 0 7 chr1 69379583 69379725 -173284628 + G-rich Low_complexity Low_complexity 4 144 0 700 181 12 6 chr1 69379746 69379917 -173284436 + G-rich Low_complexity Low_complexity 1 172 0 1095 167 40 5 chr1 69379922 69380144 -173284209 - MLT1D LTR MaLR -2 503 274 1020 189 11 0 chr1 69380185 69380370 -173283983 - MLT1D LTR MaLR -318 187 1 188 163 0 41 chr1 69380373 69380422 -173283931 + GA-rich Low_complexity Low_complexity 1 47 0 2276 121 0 0 chr1 69381039 69381375 -173282978 - AluSx SINE Alu 0 336 1 2472 74 0 6 chr1 69381423 69381735 -173282618 + AluY SINE Alu 2 311 0 581 194 173 68 chr1 69381747 69381995 -173282358 - MER5C DNA MER1_type -50 274 1 2367 111 0 0 chr1 69382268 69382565 -173281788 - AluSx SINE Alu -15 297 1 345 179 15 0 chr1 69382573 69382640 -173281713 - Charlie4 DNA MER1_type -4 1957 1890 1506 162 39 88 chr1 69382954 69383262 -173281091 - AluJo SINE Alu -19 293 1 309 336 36 18 chr1 69383262 69383372 -173280981 + L2 LINE L2 3154 3265 -7 388 132 0 0 chr1 69383372 69383445 -173280908 + L1 LINE L1 4659 4731 -1415 259 338 170 16 chr1 69383772 69384266 -173280087 - L2 LINE L2 -558 2756 2187 198 0 0 0 chr1 69384422 69384444 -173279909 + (A)n Simple_repeat Simple_repeat 1 22 0 773 144 0 45 chr1 69384809 69384941 -173279412 + FLAM_C SINE Alu 2 127 -16 2453 85 3 3 chr1 69385136 69385443 -173278910 - AluSp SINE Alu -6 307 1 2510 144 59 0 chr1 69385670 69386074 -173278279 - MSTA LTR MaLR 0 428 1 186 128 0 51 chr1 69386079 69386118 -173278235 + MIR SINE MIR 166 202 -60 833 225 54 50 chr1 69386125 69386248 -173278105 - MIR SINE MIR -10 252 125 2160 119 0 3 chr1 69386248 69386575 -173277778 + AluSx SINE Alu 1 326 0 833 225 54 50 chr1 69386575 69386672 -173277681 - MIR SINE MIR -137 125 30 537 281 183 12 chr1 69386723 69387068 -173277285 - MLT1I LTR MaLR -1 408 5 957 217 0 0 chr1 69387496 69387662 -173276691 - FRAM SINE Alu 0 166 1 745 192 27 0 chr1 69387662 69387812 -173276541 - L1MB4 LINE L1 -25 6155 6000 292 250 125 0 chr1 69387813 69387909 -173276444 - MIR SINE MIR -98 164 57 1262 255 28 52 chr1 69388255 69388660 -173275693 + MLT1J LTR MaLR 56 450 -61 595 253 169 60 chr1 69388660 69388711 -173275642 - MLT1H LTR MaLR 0 549 505 2313 106 0 0 chr1 69388711 69389014 -173275339 + AluSx SINE Alu 1 303 -9 595 253 169 60 chr1 69389014 69389263 -173275090 - MLT1H LTR MaLR -44 505 216 345 123 0 18 chr1 69389404 69389461 -173274892 + MLT1J LTR MaLR 446 501 -10 1575 168 3 57 chr1 69389787 69390085 -173274268 + AluJo SINE Alu 7 288 -24 2051 140 0 3 chr1 69390096 69390388 -173273965 + AluSx SINE Alu 1 291 -21 31 58 0 0 chr1 69390421 69390473 -173273880 + AT_rich Low_complexity Low_complexity 1 52 0 2537 50 7 0 chr1 69390474 69390774 -173273579 + AluY SINE Alu 1 302 -9 2179 122 3 0 chr1 69390779 69391083 -173273270 + AluSx SINE Alu 1 305 -7 2523 51 0 0 chr1 69391083 69391378 -173272975 + AluY SINE Alu 1 295 -16 188 265 206 0 chr1 69392362 69392430 -173271923 + MIR SINE MIR 111 192 -70 250 245 172 61 chr1 69393176 69393339 -173271014 + MIR SINE MIR 36 216 -46 569 165 0 55 chr1 69393504 69393631 -173270722 + L2 LINE L2 3188 3307 -6 1651 171 0 14 chr1 69393828 69394115 -173270238 + AluJo SINE Alu 26 308 -4 2375 68 0 4 chr1 69394411 69394731 -173269622 + AluSq SINE Alu 5 323 0 22 80 0 0 chr1 69394964 69395014 -173269339 + AT_rich Low_complexity Low_complexity 1 50 0 2692 124 24 54 chr1 69395192 69395384 -173268969 - Tigger2 DNA MER2_type 0 2718 2522 2838 44 0 0 chr1 69395384 69395722 -173268631 - L1PA4 LINE L1 -3 6152 5815 2692 124 24 54 chr1 69395722 69395775 -173268578 - Tigger2 DNA MER2_type -196 2522 2469 2373 90 3 0 chr1 69395775 69396074 -173268279 + AluSq SINE Alu 1 300 -13 2692 124 24 54 chr1 69396074 69396287 -173268066 - Tigger2 DNA MER2_type -249 2469 2273 336 194 0 42 chr1 69396277 69396349 -173268004 - Tigger2 DNA MER2_type -2649 69 1 * 25 0 0 0 chr1 69396364 69396389 -173267964 + AT_rich Low_complexity Low_complexity 1 25 0 2198 137 0 0 chr1 69396390 69396696 -173267657 - AluSx SINE Alu -6 306 1 25 31 0 0 chr1 69397107 69397139 -173267214 + AT_rich Low_complexity Low_complexity 1 32 0 1618 180 68 62 chr1 69397155 69397539 -173266814 + MSTD LTR MaLR 1 386 -10 2808 258 24 7 chr1 69397751 69398472 -173265881 + MER20B DNA MER1_type 10 742 -41 1006 269 125 3 chr1 69398491 69398844 -173265509 + L2 LINE L2 309 704 -2610 1000 259 28 79 chr1 69399130 69399750 -173264603 + L2 LINE L2 724 1373 -1941 7699 180 28 24 chr1 69399756 69399989 -173264364 - Charlie1 DNA MER1_type -1 2760 2529 2282 95 3 0 chr1 69399989 69400297 -173264056 - AluSx SINE Alu 0 309 1 7699 180 28 24 chr1 69400297 69401679 -173262674 - Charlie1 DNA MER1_type -232 2529 1138 1775 171 3 3 chr1 69401686 69401978 -173262375 - AluJo SINE Alu -2 310 19 269 61 0 0 chr1 69401978 69402011 -173262342 + MER57A LTR ERV1 9 41 -362 2362 105 0 0 chr1 69402040 69402346 -173262007 - AluSx SINE Alu -6 306 1 2403 130 13 21 chr1 69402347 69402724 -173261629 + MER57A LTR ERV1 30 403 0 1321 211 0 0 chr1 69402748 69402999 -173261354 - Charlie1 DNA MER1_type -1625 1136 886 276 125 0 0 chr1 69403025 69403065 -173261288 + MSTD LTR MaLR 357 396 0 2254 114 0 0 chr1 69403115 69403412 -173260941 + AluSq SINE Alu 1 297 -16 1691 169 44 49 chr1 69403460 69403827 -173260526 - MLT1A1 LTR MaLR 0 365 1 875 148 0 15 chr1 69403932 69404130 -173260223 + FLAM_C SINE Alu 1 196 0 24 32 0 0 chr1 69404173 69404204 -173260149 + AT_rich Low_complexity Low_complexity 1 31 0 2086 124 10 7 chr1 69404248 69404546 -173259807 + AluSq SINE Alu 1 299 -14 910 107 0 23 chr1 69404614 69404745 -173259608 - FLAM_C SINE Alu -5 128 1 4643 207 58 59 chr1 69404941 69405534 -173258819 + L1MC4 LINE L1 6793 7385 -610 1666 156 105 4 chr1 69405534 69405810 -173258543 - AluJb SINE Alu -8 304 1 4643 207 58 59 chr1 69405810 69406480 -173257873 + L1MC4 LINE L1 7385 7995 0 264 359 19 10 chr1 69406605 69406708 -173257645 - L2 LINE L2 -51 3221 3118 1203 265 73 19 chr1 69408050 69408462 -173255891 + MER69 DNA AcHobo 1 434 -2092 296 319 24 12 chr1 69408893 69409059 -173255294 - MIR SINE MIR 0 262 95 2165 113 0 0 chr1 69409534 69409845 -173254508 + AluSq SINE Alu 1 311 0 2415 229 58 45 chr1 69409974 69410772 -173253581 + L1MC5 LINE L1 7106 7913 -48 1982 135 3 20 chr1 69410782 69411086 -173253267 - AluJb SINE Alu 0 312 14 1020 44 0 0 chr1 69411113 69411227 -173253126 + AluY SINE Alu 1 114 -197 2642 43 0 0 chr1 69411227 69411526 -173252827 - AluY SINE Alu -12 299 1 1602 55 0 5 chr1 69411527 69411727 -173252626 + AluY SINE Alu 103 301 -10 752 298 86 9 chr1 69412179 69412515 -173251838 + LTR16A LTR ERVL 79 440 -10 2014 121 13 80 chr1 69413455 69413842 -173250511 + L1MB3 LINE L1 5816 6176 -7 570 249 113 12 chr1 69413902 69414107 -173250246 + MIR SINE MIR 34 256 -6 540 259 39 91 chr1 69414125 69414357 -173249996 + MIR SINE MIR 9 228 -34 2270 113 135 5 chr1 69414506 69414885 -173249468 + MSTA LTR MaLR 1 428 0 214 273 273 7 chr1 69414903 69415042 -173249311 - MIR SINE MIR -10 252 77 2513 70 0 0 chr1 69415722 69416021 -173248332 - AluY SINE Alu -12 299 1 294 283 40 0 chr1 69417085 69417184 -173247169 + MIR3 SINE MIR 78 180 -28 267 333 26 9 chr1 69417168 69417282 -173247071 - MER5A DNA MER1_type -6 183 68 * 198 118 0 0 chr1 69417301 69417335 -173247018 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 269 234 43 53 chr1 69417343 69417437 -173246916 + MIR3 SINE MIR 116 208 0 688 223 50 55 chr1 69418182 69418402 -173245951 + L1MC4a LINE L1 6499 6717 -1091 810 224 0 29 chr1 69418402 69418572 -173245781 + FRAM SINE Alu 1 164 -12 3027 201 79 94 chr1 69418574 69419587 -173244766 + L1MC5 LINE L1 6715 7742 -219 1574 147 56 35 chr1 69419587 69419872 -173244481 - AluJo SINE Alu -16 296 6 3027 201 79 94 chr1 69419872 69419895 -173244458 + L1MC5 LINE L1 7742 7764 -197 1669 181 3 16 chr1 69419895 69420198 -173244155 - AluJo SINE Alu -11 301 3 3027 201 79 94 chr1 69420198 69420394 -173243959 + L1MC5 LINE L1 7764 7929 -32 317 332 126 16 chr1 69421492 69421682 -173242671 - MIR SINE MIR -48 214 4 247 268 134 0 chr1 69421779 69421876 -173242477 - MER91C DNA MER1_type -9 131 22 1017 275 62 32 chr1 69422126 69422591 -173241762 + L2 LINE L2 2084 2562 -752 2093 152 11 20 chr1 69422656 69423012 -173241341 + MLT1A1 LTR MaLR 1 353 -12 321 128 0 0 chr1 69423177 69423224 -173241129 - AluJo SINE Alu -9 293 247 401 148 0 0 chr1 69423387 69423448 -173240905 - AluJo SINE Alu -61 241 181 782 203 0 7 chr1 69423449 69423592 -173240761 - AluJo SINE Alu -169 143 2 264 293 53 15 chr1 69423676 69423809 -173240544 + L2 LINE L2 1859 1996 -1318 234 367 53 16 chr1 69424126 69424371 -173239982 + L2 LINE L2 2189 2442 -872 300 329 21 0 chr1 69424385 69424528 -173239825 + L2 LINE L2 2553 2698 -616 279 290 122 0 chr1 69424629 69424760 -173239593 + MER103 DNA DNA 3 149 -17 340 269 56 0 chr1 69425003 69425111 -173239242 + LTR33 LTR ERVL 67 180 -341 800 203 25 15 chr1 69425174 69425371 -173238982 + LTR33 LTR ERVL 301 499 -22 188 331 79 39 chr1 69425386 69425513 -173238840 + MIR SINE MIR 118 249 -13 740 182 16 0 chr1 69426020 69426141 -173238212 + FLAM_A SINE Alu 1 123 -10 2060 167 0 0 chr1 69426164 69426476 -173237877 + AluSx SINE Alu 1 312 0 2374 104 0 0 chr1 69426483 69426792 -173237561 + AluSx SINE Alu 1 309 -3 1864 184 68 10 chr1 69427993 69428406 -173235947 + MLT1D LTR MaLR 1 437 -68 918 217 0 0 chr1 69428994 69429160 -173235193 - FRAM SINE Alu 0 166 1 749 196 25 6 chr1 69429160 69429310 -173235043 - L1MB4 LINE L1 -25 6155 6000 270 261 102 0 chr1 69429319 69429407 -173234946 - MIR SINE MIR -109 153 57 1262 255 28 52 chr1 69429753 69430158 -173234195 + MLT1J LTR MaLR 56 450 -61 595 253 169 60 chr1 69430158 69430209 -173234144 - MLT1H LTR MaLR 0 549 505 2313 106 0 0 chr1 69430209 69430512 -173233841 + AluSx SINE Alu 1 303 -9 595 253 169 60 chr1 69430512 69430761 -173233592 - MLT1H LTR MaLR -44 505 216 345 123 0 18 chr1 69430902 69430959 -173233394 + MLT1J LTR MaLR 446 501 -10 1575 168 3 57 chr1 69431285 69431583 -173232770 + AluJo SINE Alu 7 288 -24 2051 140 0 3 chr1 69431594 69431886 -173232467 + AluSx SINE Alu 1 291 -21 31 58 0 0 chr1 69431919 69431971 -173232382 + AT_rich Low_complexity Low_complexity 1 52 0 2537 50 7 0 chr1 69431972 69432272 -173232081 + AluY SINE Alu 1 302 -9 2137 128 3 0 chr1 69432277 69432581 -173231772 + AluSx SINE Alu 1 305 -7 2523 51 0 0 chr1 69432581 69432876 -173231477 + AluY SINE Alu 1 295 -16 188 265 206 0 chr1 69433860 69433928 -173230425 + MIR SINE MIR 111 192 -70 250 245 172 61 chr1 69434674 69434837 -173229516 + MIR SINE MIR 36 216 -46 569 165 0 55 chr1 69435002 69435129 -173229224 + L2 LINE L2 3188 3307 -6 1651 171 0 14 chr1 69435326 69435613 -173228740 + AluJo SINE Alu 26 308 -4 2394 82 0 3 chr1 69435909 69436203 -173228150 + AluSx SINE Alu 5 297 -15 2411 123 71 20 chr1 69436543 69436910 -173227443 + MSTA LTR MaLR 1 392 -36 2389 85 3 3 chr1 69436910 69437216 -173227137 - AluSp SINE Alu -7 306 1 2411 123 71 20 chr1 69437216 69437255 -173227098 + MSTA LTR MaLR 392 428 0 202 304 39 10 chr1 69437942 69438044 -173226309 + L2 LINE L2 1792 1896 -1418 1523 202 150 86 chr1 69438058 69438121 -173226232 - MLT1G LTR MaLR -14 576 518 2028 119 0 36 chr1 69438121 69438423 -173225930 - AluSq SINE Alu -22 291 1 1523 202 150 86 chr1 69438423 69438939 -173225414 - MLT1G LTR MaLR -72 518 1 647 322 145 32 chr1 69438944 69438977 -173225376 + L2 LINE L2 1898 1926 -1388 1611 205 22 35 chr1 69438977 69439347 -173225006 - MLT1A1 LTR MaLR 0 365 1 647 322 145 32 chr1 69439347 69439384 -173224969 + L2 LINE L2 1926 1957 -1357 235 0 0 0 chr1 69439384 69439410 -173224943 + (TTTTG)n Simple_repeat Simple_repeat 5 165 0 1796 159 3 14 chr1 69439410 69439700 -173224653 - AluJb SINE Alu -1 312 1 647 322 145 32 chr1 69439700 69440226 -173224127 + L2 LINE L2 1956 2565 -749 929 201 6 17 chr1 69440251 69440425 -173223928 + FAM SINE Alu 1 172 -3 1706 172 6 49 chr1 69440678 69440825 -173223528 + AluJb SINE Alu 1 153 -159 2111 76 65 10 chr1 69440825 69441115 -173223238 + AluSp SINE Alu 1 306 -7 1706 172 6 49 chr1 69441115 69441293 -173223060 + AluJb SINE Alu 153 312 0 1316 233 122 56 chr1 69441328 69441827 -173222526 - MLT1F1 LTR MaLR 0 567 11 217 362 126 11 chr1 69441831 69442005 -173222348 - L2 LINE L2 -213 3059 2866 24 53 0 0 chr1 69442187 69442225 -173222128 + AT_rich Low_complexity Low_complexity 1 38 0 2251 120 3 0 chr1 69442369 69442678 -173221675 - AluSx SINE Alu -2 310 1 2108 123 0 26 chr1 69442688 69442990 -173221363 - AluSx SINE Alu -18 294 1 2698 236 65 17 chr1 69443008 69443868 -173220485 - L1ME3A LINE L1 -5 6165 5265 1595 123 93 33 chr1 69443873 69444173 -173220180 - MLT1C LTR MaLR -6 461 144 1861 137 47 44 chr1 69444173 69444592 -173219761 + MER52C LTR ERV1 1 512 -766 2630 64 23 6 chr1 69444741 69445085 -173219268 - L1PA10 LINE L1 -15 6153 5804 727 226 18 102 chr1 69445085 69445360 -173218993 - L1ME LINE L1 -585 5581 5330 902 211 54 130 chr1 69445361 69445807 -173218546 - MLT2B1 LTR ERVL 0 414 3 2489 190 71 16 chr1 69445809 69446484 -173217869 - L1ME LINE L1 -810 5336 4625 659 206 15 0 chr1 69446596 69446727 -173217626 - AluJb SINE Alu -1 311 179 2478 82 0 0 chr1 69447209 69447515 -173216838 - AluSx SINE Alu -6 306 1 735 236 88 30 chr1 69447588 69447885 -173216468 - HAL1 LINE L1 -345 2162 1849 1975 143 17 0 chr1 69448381 69448674 -173215679 + AluSx SINE Alu 1 298 -14 2355 63 3 0 chr1 69448676 69448961 -173215392 + AluY SINE Alu 1 286 -25 25 31 0 0 chr1 69448961 69448993 -173215360 + AT_rich Low_complexity Low_complexity 1 32 0 674 192 66 16 chr1 69449045 69449227 -173215126 + MER106A DNA MER1_type 41 231 -5 886 246 27 9 chr1 69449828 69450048 -173214305 - MER58A DNA MER1_type 0 224 1 663 65 0 0 chr1 69450296 69450389 -173213964 + L1MA2 LINE L1 6212 6304 0 25 0 0 0 chr1 69450769 69450794 -173213559 + AT_rich Low_complexity Low_complexity 1 25 0 2352 71 0 7 chr1 69450794 69451088 -173213265 + AluY SINE Alu 1 292 -19 1493 183 60 0 chr1 69451177 69451445 -173212908 - AluJo SINE Alu -20 292 9 2212 116 3 0 chr1 69451493 69451794 -173212559 + AluSx SINE Alu 1 302 -10 476 229 160 68 chr1 69452319 69452487 -173211866 - L2 LINE L2 -1367 1947 1796 2052 86 52 0 chr1 69452487 69452792 -173211561 + AluSg SINE Alu 1 319 0 476 229 160 68 chr1 69452792 69452915 -173211438 - L2 LINE L2 -1518 1796 1628 410 282 8 16 chr1 69452920 69453044 -173211309 - L2 LINE L2 -2358 956 834 861 121 0 35 chr1 69453050 69453191 -173211162 + AluJb SINE Alu 1 136 -176 407 343 24 19 chr1 69453320 69453530 -173210823 + MLT1J LTR MaLR 299 509 -2 307 329 112 0 chr1 69453532 69453684 -173210669 + L1M4 LINE L1 2305 2473 -3673 368 281 35 64 chr1 69453795 69453998 -173210355 - LTR67 LTR ERVL -14 543 347 2325 88 0 22 chr1 69454146 69454463 -173209890 - AluSg SINE Alu 0 310 1 373 254 36 29 chr1 69454523 69454661 -173209692 + L1M4 LINE L1 3593 3731 -2415 * 988 177 45 0 chr1 69454644 69454908 -173209445 + L1PA16 LINE L1 5847 6157 -9 741 226 116 0 chr1 69455019 69455218 -173209135 + MIR SINE MIR 3 224 -38 1280 78 0 0 chr1 69455565 69455719 -173208634 + AluSq SINE Alu 1 154 -159 2096 103 10 3 chr1 69456315 69456605 -173207748 - AluSx SINE Alu -20 292 1 1882 128 4 0 chr1 69456825 69457083 -173207270 + AluSx SINE Alu 1 259 -53 1843 157 0 3 chr1 69457918 69458230 -173206123 + AluJb SINE Alu 1 311 0 405 0 0 0 chr1 69458742 69458787 -173205566 + (CA)n Simple_repeat Simple_repeat 2 46 0 236 289 74 66 chr1 69458977 69459219 -173205134 + L1MEd LINE L1 275 518 -5601 565 237 0 0 chr1 69459362 69459493 -173204860 - MLT1D LTR MaLR -8 497 367 586 198 0 0 chr1 69459493 69459594 -173204759 + FLAM_A SINE Alu 4 104 -38 1274 208 57 38 chr1 69459595 69459961 -173204392 - MLT1D LTR MaLR -132 373 1 1125 149 0 6 chr1 69460089 69460264 -173204089 + AluJb SINE Alu 1 174 -138 257 81 0 0 chr1 69460269 69460306 -173204047 - Alu SINE Alu -257 45 9 204 40 0 0 chr1 69460309 69460334 -173204019 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 300 212 0 0 chr1 69460334 69460400 -173203953 + CT-rich Low_complexity Low_complexity 2 67 0 1260 154 22 40 chr1 69460482 69460709 -173203644 + AluJo SINE Alu 11 233 -79 2596 194 113 48 chr1 69460713 69461481 -173202872 + LTR1B LTR ERV1 9 826 0 358 141 0 64 chr1 69461481 69461559 -173202794 + AluJo SINE Alu 230 302 0 1980 132 31 0 chr1 69461622 69461911 -173202442 - AluSx SINE Alu -14 298 1 368 125 0 0 chr1 69461977 69462033 -173202320 - AluJb SINE Alu -161 141 86 1125 212 18 5 chr1 69462033 69462250 -173202103 - AluJo SINE Alu -92 220 1 286 287 185 8 chr1 69462253 69462518 -173201835 - L1M4 LINE L1 -1200 4946 4635 24 0 0 0 chr1 69462518 69462542 -173201811 + AT_rich Low_complexity Low_complexity 1 24 0 946 289 56 52 chr1 69462581 69463019 -173201334 + MLT1H1 LTR MaLR 53 495 -60 2189 99 0 26 chr1 69463019 69463323 -173201030 + AluSx SINE Alu 1 296 -16 946 289 56 52 chr1 69463323 69463369 -173200984 + MLT1H1 LTR MaLR 495 539 -16 2479 69 0 3 chr1 69463458 69463762 -173200591 + AluY SINE Alu 1 303 -8 2214 119 0 0 chr1 69463773 69464066 -173200287 + AluSq SINE Alu 1 293 -20 312 242 32 0 chr1 69464187 69464282 -173200071 - L1MEd LINE L1 -5081 1038 941 2007 143 0 31 chr1 69464290 69464611 -173199742 - AluJb SINE Alu -1 311 1 394 256 16 18 chr1 69465224 69465362 -173198991 - L1ME3A LINE L1 -298 5864 5724 888 64 0 0 chr1 69465640 69465750 -173198603 + AluY SINE Alu 193 302 -9 423 367 183 12 chr1 69465780 69466287 -173198066 - L2 LINE L2 -1167 2147 1554 299 234 255 14 chr1 69466330 69466471 -173197882 - L2 LINE L2 -16 3297 3123 5471 75 20 16 chr1 69466505 69467353 -173197000 + L1PA14 LINE L1 5313 6160 -1 24 0 0 0 chr1 69467365 69467389 -173196964 + AT_rich Low_complexity Low_complexity 1 24 0 403 249 158 19 chr1 69467610 69467819 -173196534 + L2 LINE L2 3076 3313 0 240 189 75 19 chr1 69468925 69468978 -173195375 + L2 LINE L2 3203 3258 -14 385 298 75 93 chr1 69469412 69469744 -173194609 - L2 LINE L2 0 3313 2988 * 623 218 47 128 chr1 69469726 69469804 -173194549 - L2 LINE L2 -549 2765 2682 2412 81 3 0 chr1 69469804 69470101 -173194252 - AluSp SINE Alu -15 298 1 623 218 47 128 chr1 69470101 69470256 -173194097 - L2 LINE L2 -632 2682 2551 3936 282 70 37 chr1 69470312 69470889 -173193464 - L2 LINE L2 -1035 2279 1722 3274 119 14 37 chr1 69470889 69471479 -173192874 - L1MA3 LINE L1 -2 6303 5728 3936 282 70 37 chr1 69471479 69472100 -173192253 - L2 LINE L2 -1592 1722 1123 2241 123 0 0 chr1 69472100 69472401 -173191952 - AluSq SINE Alu -12 301 1 3936 282 70 37 chr1 69472401 69472629 -173191724 - L2 LINE L2 -2191 1123 798 1542 116 13 9 chr1 69472629 69472854 -173191499 + MER30 DNA MER1_type 1 226 -4 3936 282 70 37 chr1 69472854 69472935 -173191418 - L2 LINE L2 -2516 798 721 35 24 0 0 chr1 69473163 69473205 -173191148 + AT_rich Low_complexity Low_complexity 1 42 0 2018 77 0 0 chr1 69474413 69474661 -173189692 - AluSc SINE Alu -9 300 53 387 0 0 0 chr1 69474693 69474736 -173189617 + (TA)n Simple_repeat Simple_repeat 1 43 0 214 77 0 0 chr1 69474736 69474762 -173189591 + (T)n Simple_repeat Simple_repeat 1 26 0 916 46 0 0 chr1 69475168 69475277 -173189076 - AluY SINE Alu -10 301 193 1916 232 80 65 chr1 69475325 69476028 -173188325 + L1MC5 LINE L1 6489 7214 -747 1954 148 0 28 chr1 69476028 69476346 -173188007 + AluJo SINE Alu 1 309 -3 1916 232 80 65 chr1 69476346 69476650 -173187703 + L1MC5 LINE L1 7214 7512 -449 328 313 35 100 chr1 69476650 69476880 -173187473 + L2 LINE L2 3054 3268 -4 255 296 94 13 chr1 69477501 69477660 -173186693 - L1MC/D LINE L1 -2104 5704 5533 222 37 0 0 chr1 69477740 69477767 -173186586 + (T)n Simple_repeat Simple_repeat 1 27 0 341 321 71 46 chr1 69478127 69478367 -173185986 + MIR SINE MIR 17 262 0 739 180 54 6 chr1 69479065 69479232 -173185121 + MER5B DNA MER1_type 1 175 -3 180 225 0 0 chr1 69479894 69479934 -173184419 + L2 LINE L2 3271 3310 -3 386 330 43 75 chr1 69480148 69480430 -173183923 + L2 LINE L2 2999 3271 -1 2707 29 0 0 chr1 69482487 69482796 -173181557 - AluYa5 SINE Alu -2 309 1 193 346 53 38 chr1 69482934 69483197 -173181156 + L2 LINE L2 1453 1719 -1595 237 321 93 71 chr1 69483220 69483744 -173180609 + L2 LINE L2 1986 2521 -793 227 339 87 44 chr1 69483724 69483907 -173180446 + L2 LINE L2 2867 3057 -215 * 1640 206 26 24 chr1 69483967 69484307 -173180046 - MER58B DNA MER1_type 0 341 1 1587 152 134 0 chr1 69485346 69485615 -173178738 - AluJo SINE Alu -7 305 1 25 65 0 0 chr1 69486007 69486053 -173178300 + AT_rich Low_complexity Low_complexity 1 46 0 2244 106 13 7 chr1 69486324 69486626 -173177727 - AluSx SINE Alu -8 304 1 210 116 0 47 chr1 69486717 69486760 -173177593 + (TTAA)n Simple_repeat Simple_repeat 1 41 0 1374 157 0 5 chr1 69486933 69487143 -173177210 + AluSg/x SINE Alu 94 302 -10 27 49 0 0 chr1 69487982 69488023 -173176330 + AT_rich Low_complexity Low_complexity 1 41 0 27 29 0 0 chr1 69488516 69488550 -173175803 + AT_rich Low_complexity Low_complexity 1 34 0 1195 285 134 16 chr1 69488559 69488998 -173175355 + L2 LINE L2 2823 3313 0 283 171 0 110 chr1 69489377 69489459 -173174894 - Tigger2 DNA MER2_type 0 2718 2646 639 228 60 6 chr1 69489574 69489741 -173174612 + Charlie1b DNA MER1_type 34 209 -314 706 143 159 0 chr1 69489800 69489982 -173174371 + Charlie1b DNA MER1_type 310 520 -3 2125 96 13 17 chr1 69491509 69491810 -173172543 + AluSg SINE Alu 3 302 -8 249 108 0 0 chr1 69491821 69491858 -173172495 + (CA)n Simple_repeat Simple_repeat 2 38 0 1848 151 7 10 chr1 69491883 69492175 -173172178 + AluSg SINE Alu 1 291 -19 2168 60 8 0 chr1 69492175 69492442 -173171911 + AluY SINE Alu 31 299 -12 2445 61 3 0 chr1 69493252 69493545 -173170808 - AluY SINE Alu -17 294 1 203 156 0 0 chr1 69493957 69493989 -173170364 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 1504 157 52 21 chr1 69495874 69496160 -173168193 - AluJb SINE Alu -17 295 1 1966 164 0 7 chr1 69496609 69496913 -173167440 + AluJb SINE Alu 1 302 -10 2495 54 0 7 chr1 69497707 69498005 -173166348 + AluY SINE Alu 1 296 -15 2350 97 6 0 chr1 69498680 69498991 -173165362 + AluSp SINE Alu 1 313 0 881 117 102 68 chr1 69499166 69499372 -173164981 + MER7A DNA MER2_type 1 211 -135 878 95 108 19 chr1 69499382 69499540 -173164813 - MER30 DNA MER1_type -55 175 4 637 151 119 0 chr1 69499544 69499670 -173164683 + MER7A DNA MER2_type 197 337 0 2124 122 3 0 chr1 69499799 69500093 -173164260 - AluSx SINE Alu -17 295 1 212 184 20 0 chr1 69500142 69500191 -173164162 + (CA)n Simple_repeat Simple_repeat 2 51 0 708 249 47 32 chr1 69501274 69501496 -173162857 - MIR SINE MIR -2 260 34 2067 136 10 3 chr1 69501509 69501810 -173162543 - AluSx SINE Alu -9 303 1 610 233 136 27 chr1 69502058 69502359 -173161994 - MER46C DNA MER2_type -3 335 2 1901 144 17 10 chr1 69502773 69503072 -173161281 - AluJb SINE Alu -11 301 1 204 293 57 50 chr1 69504458 69504598 -173159755 - MIR SINE MIR -26 236 96 473 214 126 0 chr1 69504820 69504923 -173159430 + FLAM_A SINE Alu 4 119 -14 24 0 0 0 chr1 69505403 69505427 -173158926 + AT_rich Low_complexity Low_complexity 1 24 0 2292 69 0 0 chr1 69506250 69506525 -173157828 + AluSg SINE Alu 16 290 -20 759 268 144 17 chr1 69510009 69510338 -173154015 - L2 LINE L2 -247 3066 2780 2367 65 3 0 chr1 69510338 69510632 -173153721 + AluSp SINE Alu 1 295 -18 759 268 144 17 chr1 69510632 69510801 -173153552 - L2 LINE L2 -533 2780 2476 1184 138 69 58 chr1 69510808 69511068 -173153285 + AluJo SINE Alu 41 303 -9 245 305 214 0 chr1 69511082 69511213 -173153140 - L2 LINE L2 -865 2449 2291 1187 195 72 39 chr1 69512151 69512484 -173151869 + MER2 DNA MER2_type 1 344 0 2236 99 14 0 chr1 69512552 69512846 -173151507 - AluSg SINE Alu -12 298 1 1528 253 122 11 chr1 69513239 69513697 -173150656 - MLT1J LTR MaLR 0 511 3 769 291 93 12 chr1 69513825 69514158 -173150195 + LTR16A LTR ERVL 1 360 -90 3296 267 86 24 chr1 69514279 69515569 -173148784 + HERV16 LTR ERVL 87 1456 -3540 1871 260 58 16 chr1 69515630 69516237 -173148116 + HERV16 LTR ERVL 1601 2232 -2764 1095 185 7 91 chr1 69516267 69516553 -173147800 - MLT1A2 LTR MaLR -2 372 111 1402 177 122 6 chr1 69516555 69516866 -173147487 + MLT1A1 LTR MaLR 19 365 0 583 143 0 0 chr1 69516868 69516959 -173147394 - MLT1A2 LTR MaLR -265 109 19 1150 268 38 81 chr1 69516971 69517327 -173147026 + HERV16 LTR ERVL 2253 2623 -2373 1636 182 18 11 chr1 69517327 69517602 -173146751 + AluJo SINE Alu 1 277 -35 2196 81 0 0 chr1 69517603 69517874 -173146479 - AluY SINE Alu -5 306 36 1150 268 38 81 chr1 69517874 69518049 -173146304 + HERV16 LTR ERVL 2622 2763 -2233 524 203 53 92 chr1 69518063 69518203 -173146150 + HAL1 LINE L1 2192 2323 -184 1666 164 14 14 chr1 69518203 69518526 -173145827 - AluJb SINE Alu 0 323 1 524 203 53 92 chr1 69518526 69518610 -173145743 + HAL1 LINE L1 2323 2409 -98 890 153 0 0 chr1 69518650 69518781 -173145572 - FLAM_C SINE Alu -2 131 1 1234 162 40 5 chr1 69519894 69520116 -173144237 - AluJo SINE Alu -2 310 81 1834 198 59 89 chr1 69520117 69520337 -173144016 + LTR8A LTR ERV1 75 300 -427 2309 172 32 58 chr1 69520337 69520836 -173143517 + MER66B LTR ERV1 1 486 0 1834 198 59 89 chr1 69520836 69521288 -173143065 + LTR8A LTR ERV1 300 727 0 294 206 268 0 chr1 69521479 69521576 -173142777 - MLT1H LTR MaLR -28 521 399 1530 158 4 0 chr1 69521862 69522102 -173142251 - AluJb SINE Alu -13 299 59 27 29 0 0 chr1 69522317 69522351 -173142002 + AT_rich Low_complexity Low_complexity 1 34 0 2253 93 0 0 chr1 69522417 69522708 -173141645 - AluSq SINE Alu -22 291 1 1295 81 0 0 chr1 69522995 69523156 -173141197 - AluSg/x SINE Alu -10 302 142 207 108 0 27 chr1 69523254 69523291 -173141062 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 451 232 10 0 chr1 69523501 69523600 -173140753 - AluJ/FLAM SINE Alu -212 100 1 2086 111 14 0 chr1 69524381 69524670 -173139683 + AluJo SINE Alu 1 293 -19 796 122 0 58 chr1 69525435 69525574 -173138779 + FLAM_C SINE Alu 1 131 -2 5693 126 51 38 chr1 69525945 69526238 -173138115 - Tigger2 DNA MER2_type -194 2524 2236 660 208 104 0 chr1 69526238 69526382 -173137971 + FAM SINE Alu 1 159 -16 5693 126 51 38 chr1 69526382 69526398 -173137955 - Tigger2 DNA MER2_type -482 2236 2222 2159 121 0 7 chr1 69526398 69526704 -173137649 + AluSx SINE Alu 1 304 -8 5693 126 51 38 chr1 69526704 69527431 -173136922 - Tigger2 DNA MER2_type -496 2222 1473 697 213 92 18 chr1 69527494 69527658 -173136695 + AluJo SINE Alu 129 304 -8 394 138 46 23 chr1 69527658 69527745 -173136608 - L1MB4 LINE L1 -5 6175 6087 262 360 110 50 chr1 69527923 69528223 -173136130 + L2 LINE L2 2645 2962 -352 823 246 22 35 chr1 69528530 69528608 -173135745 + MIR SINE MIR 34 111 -151 1685 171 50 17 chr1 69528608 69528970 -173135383 + MLT1A2 LTR MaLR 1 374 0 823 246 22 35 chr1 69528970 69529123 -173135230 + MIR SINE MIR 111 262 0 787 271 6 0 chr1 69529178 69529348 -173135005 - MER5A DNA MER1_type -13 176 6 16122 126 10 29 chr1 69529353 69531414 -173132939 - L1PA10 LINE L1 -2 6166 4067 2200 134 0 0 chr1 69531414 69531705 -173132648 + AluSx SINE Alu 1 291 -21 16122 126 10 29 chr1 69531705 69532823 -173131530 - L1PA10 LINE L1 -2101 4067 3044 2059 127 7 13 chr1 69532823 69533122 -173131231 + AluSx SINE Alu 1 297 -15 16122 126 10 29 chr1 69533122 69533543 -173130810 - L1PA10 LINE L1 -3124 3044 2617 19091 77 15 6 chr1 69533718 69537207 -173127146 - L1PA7 LINE L1 0 6154 2641 1822 108 0 4 chr1 69537504 69537753 -173126600 - AluSc SINE Alu -9 300 53 387 0 0 0 chr1 69537785 69537828 -173126525 + (TA)n Simple_repeat Simple_repeat 1 43 0 1295 179 38 62 chr1 69537828 69538119 -173126234 - AluJo SINE Alu 0 312 29 256 281 0 0 chr1 69538293 69538350 -173126003 + (CA)n Simple_repeat Simple_repeat 2 58 0 2552 74 0 0 chr1 69538663 69538972 -173125381 + AluY SINE Alu 1 309 -2 886 175 0 13 chr1 69539825 69539979 -173124374 - FRAM SINE Alu -7 169 18 427 207 0 35 chr1 69540124 69540211 -173124142 + L2 LINE L2 3189 3272 0 24 32 0 0 chr1 69540874 69540905 -173123448 + AT_rich Low_complexity Low_complexity 1 31 0 857 158 0 0 chr1 69541539 69541672 -173122681 - FLAM_C SINE Alu 0 133 1 194 167 185 56 chr1 69542081 69542135 -173122218 + MIR SINE MIR 8 68 -194 205 338 0 0 chr1 69542137 69542205 -173122148 + MIR SINE MIR 195 262 0 412 321 55 45 chr1 69542312 69542602 -173121751 + L2 LINE L2 2540 2832 -482 357 273 188 0 chr1 69543110 69543238 -173121115 + L2 LINE L2 3162 3313 0 2874 170 76 6 chr1 69544192 69544716 -173119637 + MER68 LTR ERV1 1 561 -1 287 264 55 0 chr1 69544854 69544945 -173119408 + L2 LINE L2 2265 2360 -954 210 234 0 62 chr1 69545382 69545446 -173118907 - L2 LINE L2 -83 3230 3171 290 321 198 5 chr1 69545532 69545719 -173118634 - L2 LINE L2 -195 3118 2896 187 273 45 15 chr1 69545713 69545779 -173118574 + MIR3 SINE MIR 138 205 -3 * 404 230 77 71 chr1 69546435 69546631 -173117722 - L1ME4a LINE L1 -135 5986 5790 2061 114 60 0 chr1 69546706 69546987 -173117366 - AluSx SINE Alu -14 298 1 1562 240 143 28 chr1 69547064 69548032 -173116321 + L1MDa LINE L1 52 1295 -5245 1376 123 0 0 chr1 69548142 69548354 -173115999 + L1PB1 LINE L1 2110 2321 -3825 376 115 49 0 chr1 69548473 69548534 -173115819 - AluS SINE Alu -239 64 1 2228 98 0 13 chr1 69548573 69548878 -173115475 + AluSx SINE Alu 1 301 -11 11611 135 68 58 chr1 69548959 69549716 -173114637 + Tigger2 DNA MER2_type 1 749 -1969 2125 134 0 0 chr1 69549716 69550022 -173114331 - AluSg SINE Alu -4 306 1 11611 135 68 58 chr1 69550022 69550822 -173113531 + Tigger2 DNA MER2_type 749 1591 -1127 1920 129 54 0 chr1 69550822 69551117 -173113236 + AluSx SINE Alu 1 311 -1 11611 135 68 58 chr1 69551117 69551818 -173112535 + Tigger2 DNA MER2_type 1591 2283 -435 9106 154 15 28 chr1 69551818 69552251 -173112102 + L1PB1 LINE L1 3530 3967 -2184 2474 70 0 0 chr1 69552251 69552552 -173111801 + AluSx SINE Alu 1 301 -11 9106 154 15 28 chr1 69552552 69554720 -173109633 + L1PB1 LINE L1 3967 6096 -55 1878 117 11 0 chr1 69554720 69554984 -173109369 + AluSg SINE Alu 35 301 -9 9106 154 15 28 chr1 69554984 69555039 -173109314 + L1PB1 LINE L1 6096 6150 -1 2616 136 35 22 chr1 69555039 69555494 -173108859 + Tigger2 DNA MER2_type 2258 2718 0 1526 153 62 42 chr1 69555552 69555840 -173108513 + AluJo SINE Alu 1 294 -18 197 65 32 0 chr1 69556260 69556291 -173108062 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2082 79 4 14 chr1 69556294 69556574 -173107779 - AluSx SINE Alu -31 281 5 2329 171 14 0 chr1 69556942 69557311 -173107042 + MER68 LTR ERV1 178 551 -11 428 337 65 16 chr1 69557321 69557505 -173106848 - MIR SINE MIR -60 202 10 1751 180 10 6 chr1 69557746 69558057 -173106296 - AluJo SINE Alu 0 312 1 249 281 0 31 chr1 69558569 69558633 -173105720 + 7SK RNA RNA 1 62 -131 497 241 168 0 chr1 69561164 69561301 -173103052 - MER5A DNA MER1_type -21 168 9 22 35 0 0 chr1 69562108 69562137 -173102216 + AT_rich Low_complexity Low_complexity 1 29 0 2121 114 4 0 chr1 69562583 69562885 -173101468 - AluSx SINE Alu 0 303 1 426 167 0 0 chr1 69563171 69563237 -173101116 - AluSp SINE Alu -126 187 122 1877 164 0 10 chr1 69563842 69564141 -173100212 - AluJb SINE Alu 0 312 17 539 282 187 26 chr1 69564214 69564487 -173099866 - L3 LINE CR1 -295 1282 966 318 241 38 13 chr1 69564820 69564899 -173099454 - L2 LINE L2 -1 3312 3232 2430 56 0 3 chr1 69564899 69565202 -173099151 + AluY SINE Alu 1 302 -9 789 279 65 4 chr1 69565220 69565449 -173098904 - L2 LINE L2 -248 3065 2823 801 234 108 31 chr1 69566294 69566516 -173097837 - MIR SINE MIR 0 262 24 1957 89 111 0 chr1 69566517 69566787 -173097566 - AluSp SINE Alu -13 300 1 1275 206 12 84 chr1 69567183 69567503 -173096850 - AluJo SINE Alu -15 297 1 1638 184 23 17 chr1 69567754 69568053 -173096300 - AluJb SINE Alu -11 301 1 1130 172 15 5 chr1 69568679 69568877 -173095476 - AluJo SINE Alu -29 283 84 1716 170 24 10 chr1 69569030 69569319 -173095034 + AluJb SINE Alu 1 293 -19 558 239 0 49 chr1 69570991 69571175 -173093178 + MER104 DNA MER2_type 3 177 -3 2263 71 0 0 chr1 69573340 69573620 -173090733 + AluY SINE Alu 1 280 -31 2145 111 0 3 chr1 69573757 69574054 -173090299 + AluSx SINE Alu 1 296 -16 1093 264 72 54 chr1 69574205 69575150 -173089203 - L1ME3A LINE L1 -93 6077 5122 189 0 0 0 chr1 69575183 69575204 -173089149 + (A)n Simple_repeat Simple_repeat 1 21 0 482 217 94 0 chr1 69575241 69575347 -173089006 + FLAM_A SINE Alu 13 128 -14 300 253 10 30 chr1 69575347 69575446 -173088907 - L1ME3A LINE L1 -1147 4999 4903 228 270 40 0 chr1 69575445 69575519 -173088834 - L1ME3A LINE L1 -1169 4977 4901 * 904 253 165 44 chr1 69575579 69576033 -173088320 - L1ME3A LINE L1 -1251 4895 4497 2259 92 7 0 chr1 69576033 69576328 -173088025 - AluSp SINE Alu -16 297 1 904 253 165 44 chr1 69576328 69576387 -173087966 - L1ME3A LINE L1 -1649 4497 4447 1578 157 51 15 chr1 69576387 69576734 -173087619 - AluJo SINE Alu 0 357 1 904 253 165 44 chr1 69576734 69577101 -173087252 - L1ME3A LINE L1 -1699 4447 3906 1961 156 0 3 chr1 69577181 69577482 -173086871 + AluJo SINE Alu 7 306 -6 234 0 0 0 chr1 69577492 69577518 -173086835 + (TG)n Simple_repeat Simple_repeat 2 27 0 1065 141 58 15 chr1 69577564 69577770 -173086583 + MER2 DNA MER2_type 40 254 -91 235 274 115 0 chr1 69577845 69577958 -173086395 - L1ME3A LINE L1 -2398 3748 3623 2363 66 13 13 chr1 69577999 69578303 -173086050 - AluY SINE Alu -7 304 1 1652 152 15 0 chr1 69578606 69578875 -173085478 + AluSx SINE Alu 27 299 -13 262 288 0 0 chr1 69579101 69579167 -173085186 - L1ME3A LINE L1 -3115 3031 2966 2358 70 3 3 chr1 69579289 69579588 -173084765 + AluSg SINE Alu 1 299 -11 187 314 86 48 chr1 69579614 69579719 -173084634 - L2 LINE L2 -43 3229 3121 322 186 34 0 chr1 69579867 69579926 -173084427 - AluS SINE Alu -13 289 229 237 33 0 0 chr1 69579934 69579964 -173084389 + (CA)n Simple_repeat Simple_repeat 2 31 0 1736 155 11 7 chr1 69579965 69580249 -173084104 - AluJb SINE Alu -27 285 1 1196 142 113 0 chr1 69580655 69580867 -173083486 - MER46A DNA MER2_type 0 236 1 335 245 112 0 chr1 69581013 69581111 -173083242 + MIR SINE MIR 120 228 -34 700 220 59 32 chr1 69581873 69582059 -173082294 + Charlie1b DNA MER1_type 19 209 -314 762 147 158 0 chr1 69582116 69582300 -173082053 + Charlie1b DNA MER1_type 308 520 -3 2115 96 13 17 chr1 69583833 69584134 -173080219 + AluSg SINE Alu 3 302 -8 249 108 0 0 chr1 69584145 69584182 -173080171 + (CA)n Simple_repeat Simple_repeat 2 38 0 1796 157 0 0 chr1 69584207 69584481 -173079872 + AluSg SINE Alu 1 274 -36 2018 68 0 0 chr1 69584499 69584749 -173079604 + AluY SINE Alu 31 280 -31 216 246 0 0 chr1 69584885 69584954 -173079399 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1586 166 0 107 chr1 69585362 69585700 -173078653 - AluJo SINE Alu -10 302 1 945 274 8 8 chr1 69586289 69586523 -173077830 - MIR SINE MIR -21 241 8 1265 185 0 38 chr1 69587232 69587470 -173076883 + AluJb SINE Alu 3 231 -81 1950 156 3 0 chr1 69587591 69587880 -173076473 - AluJo SINE Alu -12 300 11 945 112 0 0 chr1 69590612 69590737 -173073616 + AluJb SINE Alu 1 125 -187 203 163 47 0 chr1 69590740 69590783 -173073570 + A-rich Low_complexity Low_complexity 2 46 0 188 376 32 21 chr1 69592102 69592195 -173072158 - MIR SINE MIR -146 116 23 853 332 165 22 chr1 69592310 69593090 -173071263 + L2 LINE L2 1854 2745 -569 998 241 137 11 chr1 69593283 69593545 -173070808 + AluJo SINE Alu 1 295 -7 251 239 46 46 chr1 69593782 69593891 -173070462 - MIR SINE MIR -7 255 147 2349 103 0 0 chr1 69594103 69594405 -173069948 - AluSx SINE Alu -10 302 1 1702 168 0 29 chr1 69594892 69595202 -173069151 + AluJo SINE Alu 1 301 -11 468 258 132 36 chr1 69595672 69596029 -173068324 + HAL1b LINE L1 66 456 -892 593 261 7 7 chr1 69596186 69596339 -173068014 + FRAM SINE Alu 1 146 -30 683 189 0 0 chr1 69596372 69596504 -173067849 + FLAM_C SINE Alu 5 136 -7 3785 169 88 37 chr1 69596910 69597916 -173066437 - MER106B DNA MER1_type -1 1058 1 307 282 70 92 chr1 69598162 69598446 -173065907 + L1M4 LINE L1 2191 2468 -3678 1768 146 3 14 chr1 69598744 69599032 -173065321 - AluJo SINE Alu -16 296 12 2534 47 0 0 chr1 69599068 69599364 -173064989 + AluY SINE Alu 1 296 -15 204 40 0 0 chr1 69599716 69599741 -173064612 + (CATA)n Simple_repeat Simple_repeat 2 26 0 483 234 196 33 chr1 69600203 69600387 -173063966 + MIR SINE MIR 1 214 -48 389 310 37 12 chr1 69601474 69601701 -173062652 + MLT1J LTR MaLR 5 300 -211 1991 116 0 66 chr1 69601773 69601966 -173062387 - AluSx SINE Alu -14 298 132 2206 88 3 0 chr1 69601966 69602293 -173062060 + AluSp SINE Alu 1 328 0 1991 116 0 66 chr1 69602293 69602417 -173061936 - AluSx SINE Alu -180 132 1 912 266 14 0 chr1 69602614 69602821 -173061532 + MIR SINE MIR 51 260 -2 761 133 37 7 chr1 69603917 69604052 -173060301 + L1MA9 LINE L1 6174 6312 0 1561 164 42 4 chr1 69604381 69604644 -173059709 + AluJb SINE Alu 33 305 -7 394 233 150 17 chr1 69604963 69605143 -173059210 - L1MEd LINE L1 -5282 837 634 500 219 0 59 chr1 69605152 69605271 -173059082 + MER81 DNA DNA 1 112 -2 203 353 60 23 chr1 69605504 69605637 -173058716 + L2 LINE L2 3172 3309 -4 27 29 0 0 chr1 69605722 69605756 -173058597 + AT_rich Low_complexity Low_complexity 1 34 0 350 300 149 46 chr1 69606247 69606482 -173057871 + L2 LINE L2 2778 3037 -276 21 0 0 0 chr1 69606848 69606869 -173057484 + AT_rich Low_complexity Low_complexity 1 21 0 185 207 0 17 chr1 69606977 69607035 -173057318 + T-rich Low_complexity Low_complexity 3 59 0 305 273 45 0 chr1 69607741 69607829 -173056524 - MIR SINE MIR -130 132 41 1237 184 49 52 chr1 69607938 69608243 -173056110 + AluJb SINE Alu 1 304 -8 1299 121 53 5 chr1 69608256 69608462 -173055891 + L1MC1 LINE L1 6118 6333 0 22 0 0 0 chr1 69609311 69609333 -173055020 + AT_rich Low_complexity Low_complexity 1 22 0 366 331 31 0 chr1 69609826 69609953 -173054400 - MIR SINE MIR -12 250 120 523 285 126 34 chr1 69609998 69610205 -173054148 - MIR SINE MIR -31 231 6 402 296 92 58 chr1 69610365 69610571 -173053782 - MIR SINE MIR -48 214 2 1083 281 70 45 chr1 69610928 69611646 -173052707 + L1ME2 LINE L1 4533 5268 -878 626 229 101 6 chr1 69611647 69611826 -173052527 - MER105 DNA DNA -8 196 1 754 314 277 22 chr1 69611908 69612576 -173051777 + L2 LINE L2 27 864 -2450 192 40 0 0 chr1 69612600 69612625 -173051728 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2267 93 7 0 chr1 69612625 69612926 -173051427 + AluSp SINE Alu 1 303 -10 748 304 110 5 chr1 69613013 69613404 -173050949 + L1ME2 LINE L1 5486 5917 -247 1819 153 3 17 chr1 69613464 69613600 -173050753 + AluSx SINE Alu 1 137 -175 2374 70 0 10 chr1 69613600 69613901 -173050452 + AluY SINE Alu 1 298 -13 1819 153 3 17 chr1 69613901 69614052 -173050301 + AluSx SINE Alu 137 284 -28 1493 242 131 100 chr1 69614154 69614317 -173050036 + L1ME3A LINE L1 2138 2294 -3876 243 0 0 0 chr1 69614317 69614344 -173050009 + (CA)n Simple_repeat Simple_repeat 2 28 0 1493 242 131 100 chr1 69614344 69615087 -173049266 + L1ME3A LINE L1 2294 3012 -3158 7029 51 7 6 chr1 69615087 69616571 -173047782 + L1PA7 LINE L1 4661 6151 -3 1493 242 131 100 chr1 69616571 69617006 -173047347 + L1ME3A LINE L1 3012 3432 -2738 1948 145 0 0 chr1 69617006 69617321 -173047032 + AluSx SINE Alu 3 317 0 1493 242 131 100 chr1 69617321 69618899 -173045454 + L1ME3A LINE L1 3432 4960 -1210 2190 96 4 0 chr1 69618899 69619179 -173045174 + AluY SINE Alu 1 281 -30 191 36 36 0 chr1 69619183 69619211 -173045142 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1493 242 131 100 chr1 69619211 69619916 -173044437 + L1ME3A LINE L1 4962 5881 -289 2109 119 0 13 chr1 69619928 69620230 -173044123 + AluSx SINE Alu 1 298 -14 27 62 0 0 chr1 69620244 69620292 -173044061 + AT_rich Low_complexity Low_complexity 1 48 0 2139 110 0 10 chr1 69620435 69620727 -173043626 - AluSx SINE Alu -23 289 1 4004 187 60 22 chr1 69621158 69621360 -173042993 + L1MB7 LINE L1 5093 5286 -898 1722 181 0 13 chr1 69621360 69621659 -173042694 - AluJb SINE Alu -17 295 1 4004 187 60 22 chr1 69621659 69622505 -173041848 + L1MB7 LINE L1 5286 6173 -11 4170 23 2 27 chr1 69622790 69623309 -173041044 + L1PA4 LINE L1 5650 6155 0 222 358 0 0 chr1 69624040 69624107 -173040246 + L2 LINE L2 3191 3257 -15 1019 251 47 122 chr1 69627233 69627474 -173036879 - L2 LINE L2 -1 3312 3055 1920 136 29 0 chr1 69627474 69627753 -173036600 - AluSx SINE Alu -25 287 1 1019 251 47 122 chr1 69627753 69627768 -173036585 - L2 LINE L2 -258 3055 3040 1685 151 39 25 chr1 69627768 69628053 -173036300 - AluJo SINE Alu -23 289 1 1019 251 47 122 chr1 69628053 69628329 -173036024 - L2 LINE L2 -273 3040 2819 308 250 71 27 chr1 69628364 69628476 -173035877 + MLT1L LTR MaLR 373 489 -126 384 133 100 11 chr1 69628512 69628602 -173035751 + LTR9B LTR ERV1 463 560 -84 28 0 0 0 chr1 69628602 69628630 -173035723 + AT_rich Low_complexity Low_complexity 1 28 0 2037 142 0 3 chr1 69629423 69629718 -173034635 - AluSx SINE Alu -18 294 1 1797 159 0 22 chr1 69629911 69630225 -173034128 + AluSx SINE Alu 6 312 0 2032 129 13 0 chr1 69630385 69630688 -173033665 + AluSx SINE Alu 1 307 -5 425 283 0 14 chr1 69630767 69630912 -173033441 - MER104 DNA Tc2 -34 146 4 22 88 0 0 chr1 69631381 69631438 -173032915 + AT_rich Low_complexity Low_complexity 1 57 0 396 302 87 13 chr1 69632627 69632776 -173031577 + LTR16A LTR ERVL 286 445 -5 749 246 81 44 chr1 69632844 69632875 -173031478 + MIR SINE MIR 3 31 -231 2236 81 0 19 chr1 69632875 69633182 -173031171 + AluSc SINE Alu 1 301 -8 749 246 81 44 chr1 69633182 69633398 -173030955 + MIR SINE MIR 31 259 -3 208 297 148 32 chr1 69633969 69634124 -173030229 + L2 LINE L2 3118 3290 -23 208 304 8 88 chr1 69634373 69634498 -173029855 - MER5B DNA MER1_type -37 141 27 1747 164 3 33 chr1 69635744 69636049 -173028304 - AluJo SINE Alu -16 296 1 237 323 86 32 chr1 69636113 69636206 -173028147 + L2 LINE L2 3199 3296 -17 471 294 0 0 chr1 69636738 69636847 -173027506 + MIR SINE MIR 16 124 -138 2495 133 53 5 chr1 69636960 69637374 -173026979 + Tigger2a DNA MER2_type 1 434 0 1632 154 21 32 chr1 69637468 69637753 -173026600 - AluJo SINE Alu -30 282 1 22 0 0 0 chr1 69641226 69641248 -173023105 + AT_rich Low_complexity Low_complexity 1 22 0 365 310 26 9 chr1 69641425 69641538 -173022815 - MER5A DNA MER1_type -6 183 69 467 258 3 75 chr1 69641702 69641856 -173022497 + MER5B DNA MER1_type 10 157 -32 599 295 63 5 chr1 69642021 69642218 -173022135 + MIR SINE MIR 34 247 -15 380 330 43 75 chr1 69693790 69694072 -172970281 - L2 LINE L2 -1 3271 2999 191 225 0 0 chr1 69694286 69694326 -172970027 - L2 LINE L2 -3 3310 3271 736 198 48 0 chr1 69694988 69695155 -172969198 - MER5B DNA MER1_type -3 175 1 367 329 71 46 chr1 69695853 69696093 -172968260 - MIR SINE MIR 0 262 17 222 37 0 0 chr1 69696453 69696480 -172967873 + (A)n Simple_repeat Simple_repeat 1 27 0 400 298 68 63 chr1 69696558 69696954 -172967399 + L1MC4a LINE L1 5531 5928 -1880 319 313 35 100 chr1 69697343 69697573 -172966780 - L2 LINE L2 -4 3268 3054 2202 234 78 63 chr1 69697573 69697877 -172966476 - L1MC5 LINE L1 -449 7512 7214 1892 148 0 28 chr1 69697877 69698195 -172966158 - AluJo SINE Alu -3 309 1 2202 234 78 63 chr1 69698195 69698898 -172965455 - L1MC5 LINE L1 -747 7214 6489 902 46 0 0 chr1 69698946 69699055 -172965298 + AluY SINE Alu 193 301 -10 442 367 183 12 chr1 69699085 69699592 -172964761 - L2 LINE L2 -1167 2147 1554 306 234 255 14 chr1 69699635 69699776 -172964577 - L2 LINE L2 -16 3297 3123 5722 77 20 16 chr1 69699810 69700658 -172963695 + L1PA14 LINE L1 5313 6160 -1 24 0 0 0 chr1 69700670 69700694 -172963659 + AT_rich Low_complexity Low_complexity 1 24 0 420 249 158 19 chr1 69700915 69701124 -172963229 + L2 LINE L2 3076 3313 0 231 246 85 25 chr1 69701673 69701791 -172962562 + L1ME4a LINE L1 5209 5333 -813 540 263 172 0 chr1 69701926 69702215 -172962138 + L1ME4a LINE L1 5502 5840 -296 2267 99 0 3 chr1 69702441 69702745 -172961608 + AluSq SINE Alu 1 303 -10 292 280 75 0 chr1 69702877 69702970 -172961383 + MER33 DNA MER1_type 1 100 -224 290 250 83 61 chr1 69703846 69703978 -172960375 - L2 LINE L2 0 3313 3179 868 280 39 4 chr1 69704464 69704696 -172959657 - MIR SINE MIR -21 241 2 1789 186 0 0 chr1 69704803 69705098 -172959255 + AluJo SINE Alu 4 298 -14 1038 224 69 12 chr1 69705269 69705514 -172958839 - MIR SINE MIR -1 261 3 555 206 65 0 chr1 69705700 69705807 -172958546 + FLAM_C SINE Alu 14 127 -16 620 284 77 16 chr1 69708071 69708254 -172956099 + MIR SINE MIR 8 201 -61 * 986 308 123 23 chr1 69708251 69708845 -172955508 + L2 LINE L2 2678 3313 0 265 336 125 0 chr1 69709387 69709515 -172954838 - MIR3 SINE MIR -16 192 49 514 304 40 20 chr1 69710405 69710658 -172953695 + L1MC4 LINE L1 7593 7850 -192 302 184 0 0 chr1 69710666 69710715 -172953638 + AluSc SINE Alu 238 286 -13 242 247 155 72 chr1 69711555 69711652 -172952701 - L2 LINE L2 0 3272 3168 28 29 0 0 chr1 69711972 69712007 -172952346 + AT_rich Low_complexity Low_complexity 1 35 0 25 75 0 0 chr1 69712516 69712569 -172951784 + AT_rich Low_complexity Low_complexity 1 53 0 25 31 0 0 chr1 69712595 69712627 -172951726 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr1 69715050 69715079 -172949274 + AT_rich Low_complexity Low_complexity 1 29 0 1948 120 38 0 chr1 69716079 69716370 -172947983 + AluSx SINE Alu 1 302 -10 1832 167 0 0 chr1 69716961 69717243 -172947110 + AluJb SINE Alu 9 290 -22 188 341 49 0 chr1 69717392 69717474 -172946879 + L2 LINE L2 2767 2852 -462 192 179 26 0 chr1 69718034 69718073 -172946280 - L2 LINE L2 -4 3309 3270 190 282 29 107 chr1 69718590 69718693 -172945660 + MIR SINE MIR 118 212 -50 2145 90 0 55 chr1 69718991 69719302 -172945051 - AluSg SINE Alu -16 294 1 1540 203 58 62 chr1 69719467 69719613 -172944740 + Charlie4a DNA MER1_type 44 189 -1772 204 40 0 0 chr1 69719613 69719638 -172944715 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4812 38 10 0 chr1 69719638 69720218 -172944135 - L1PA7 LINE L1 -18 6136 5551 1540 203 58 62 chr1 69720218 69720454 -172943899 + Charlie4a DNA MER1_type 188 427 -1534 1157 162 54 9 chr1 69720454 69720676 -172943677 - MER46A DNA MER2_type 0 236 5 1540 203 58 62 chr1 69720676 69720758 -172943595 + Charlie4a DNA MER1_type 427 508 0 1876 145 0 35 chr1 69721016 69721327 -172943026 + AluSx SINE Alu 1 300 -12 426 252 0 23 chr1 69721327 69721458 -172942895 + L1MC5 LINE L1 7702 7829 -132 1492 107 9 9 chr1 69721480 69721713 -172942640 + L1PA8 LINE L1 5940 6172 0 228 271 0 0 chr1 69723033 69723081 -172941272 + MIR SINE MIR 102 149 -113 364 237 99 38 chr1 69723776 69723907 -172940446 - MIR SINE MIR 0 262 124 960 173 0 114 chr1 69723929 69724166 -172940187 + MER6B DNA MER2_type 1 210 0 23 33 0 0 chr1 69725532 69725562 -172938791 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr1 69725641 69725675 -172938678 + AT_rich Low_complexity Low_complexity 1 34 0 975 279 105 21 chr1 69725914 69726333 -172938020 + HAL1 LINE L1 1405 1858 -649 530 321 53 11 chr1 69726435 69726625 -172937728 - L2 LINE L2 -493 2821 2624 1566 164 36 7 chr1 69726625 69726958 -172937395 + MER33 DNA MER1_type 1 324 0 621 309 97 14 chr1 69726963 69727241 -172937112 - L2 LINE L2 -717 2597 2297 259 339 76 0 chr1 69727231 69727349 -172937004 - MER91C DNA MER1_type -9 131 5 * 456 308 68 47 chr1 69727475 69727709 -172936644 + MIR SINE MIR 8 246 -16 1625 153 50 56 chr1 69728508 69728848 -172935505 - MER44D DNA MER2_type -1 608 1 1982 117 28 11 chr1 69729191 69729473 -172934880 + AluSx SINE Alu 1 287 -25 207 0 0 0 chr1 69729476 69729499 -172934854 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 29 28 0 0 chr1 69729570 69729606 -172934747 + AT_rich Low_complexity Low_complexity 1 36 0 2376 73 0 13 chr1 69729798 69730113 -172934240 + AluY SINE Alu 1 311 0 228 152 20 61 chr1 69730304 69730403 -172933950 + GA-rich Low_complexity Low_complexity 2 96 0 407 263 91 103 chr1 69731211 69731443 -172932910 + MLT1H LTR MaLR 126 354 -195 1688 166 0 50 chr1 69731650 69731848 -172932505 - AluJo SINE Alu -9 303 125 2237 95 20 0 chr1 69731848 69732153 -172932200 + AluY SINE Alu 1 311 0 1688 166 0 50 chr1 69732153 69732273 -172932080 - AluJo SINE Alu -187 125 1 196 343 0 45 chr1 69732643 69732710 -172931643 + L2 LINE L2 3250 3313 0 440 257 42 84 chr1 69733337 69733598 -172930755 + MER112 DNA MER1_type 5 254 -2 1971 95 37 14 chr1 69733897 69734192 -172930161 + AluSg SINE Alu 1 302 -8 8095 233 47 48 chr1 69735026 69737212 -172927141 + L1MB7 LINE L1 2577 4753 -1431 1688 200 21 0 chr1 69737212 69737542 -172926811 - MER1B DNA MER1_type 0 337 1 8095 233 47 48 chr1 69737542 69738902 -172925451 + L1MB7 LINE L1 4753 6113 -71 2000 143 12 0 chr1 69738904 69739226 -172925127 - MER6 DNA MER2_type 0 865 280 * 2348 176 54 18 chr1 69739224 69739667 -172924686 + LTR32 LTR ERVL 13 471 0 1292 189 44 22 chr1 69739667 69739941 -172924412 - MER6 DNA MER2_type -581 284 5 334 136 0 0 chr1 69739943 69740009 -172924344 + L1MB8 LINE L1 6110 6175 -3 2269 110 0 0 chr1 69740106 69740405 -172923948 + AluSx SINE Alu 1 299 -13 2128 135 0 0 chr1 69741898 69742195 -172922158 + AluSx SINE Alu 1 297 -15 3722 210 54 16 chr1 69742822 69743745 -172920608 + L1 LINE L1 3811 4768 -1378 243 178 0 0 chr1 69743746 69743798 -172920555 + MLT2B1 LTR ERVL 456 512 -8 182 343 112 60 chr1 69743805 69743939 -172920414 - L2 LINE L2 -9 3263 3123 25 83 0 0 chr1 69744256 69744316 -172920037 + AT_rich Low_complexity Low_complexity 1 60 0 1700 103 12 4 chr1 69744510 69744753 -172919600 + AluSc SINE Alu 49 293 -16 680 146 0 9 chr1 69745009 69745119 -172919234 - FLAM_C SINE Alu -34 109 1 1761 63 0 0 chr1 69745191 69745396 -172918957 + AluY SINE Alu 18 222 -89 317 263 45 15 chr1 69746338 69746471 -172917882 - L1ME4a LINE L1 -211 5893 5757 237 274 0 0 chr1 69746504 69746555 -172917798 + L2 LINE L2 3258 3308 -5 901 257 23 5 chr1 69746592 69746806 -172917547 + MER20 DNA MER1_type 2 219 0 387 319 132 11 chr1 69746832 69747105 -172917248 - LTR33 LTR ERVL -6 515 210 744 308 93 7 chr1 69747298 69747717 -172916636 - L1ME4a LINE L1 -749 5380 4926 2354 145 8 0 chr1 69747827 69747883 -172916470 + L1MB4 LINE L1 5773 5827 -353 1839 171 17 0 chr1 69747883 69748175 -172916178 + AluJb SINE Alu 1 297 -15 2354 145 8 0 chr1 69748175 69748518 -172915835 + L1MB4 LINE L1 5827 6175 -5 207 163 20 20 chr1 69748523 69748572 -172915781 + (TA)n Simple_repeat Simple_repeat 2 50 0 1058 255 17 41 chr1 69748724 69749018 -172915335 - L2 LINE L2 -2353 961 675 21 71 0 0 chr1 69749282 69749324 -172915029 + AT_rich Low_complexity Low_complexity 1 42 0 2305 97 0 0 chr1 69749543 69749842 -172914511 + AluSg SINE Alu 1 299 -11 24 32 0 0 chr1 69750559 69750590 -172913763 + AT_rich Low_complexity Low_complexity 1 31 0 182 245 20 0 chr1 69750789 69750838 -172913515 - L2 LINE L2 0 3272 3223 1680 136 63 17 chr1 69750969 69751271 -172913082 + L1MC2 LINE L1 5711 6026 -318 2280 130 11 22 chr1 69751271 69751639 -172912714 + THE1B LTR MaLR 1 364 0 867 159 66 33 chr1 69751663 69751845 -172912508 + L1MC2 LINE L1 6149 6336 -8 2179 104 7 7 chr1 69752053 69752351 -172912002 - AluSx SINE Alu -14 298 1 193 346 53 38 chr1 69752489 69752752 -172911601 + L2 LINE L2 1453 1719 -1595 246 321 93 71 chr1 69752775 69753299 -172911054 + L2 LINE L2 1986 2521 -793 229 339 87 44 chr1 69753279 69753462 -172910891 + L2 LINE L2 2867 3057 -215 * 1644 203 26 24 chr1 69753522 69753862 -172910491 - MER58B DNA MER1_type 0 341 1 668 101 71 0 chr1 69754902 69755001 -172909352 - FRAM SINE Alu -8 168 63 415 262 77 11 chr1 69755473 69755656 -172908697 - L1ME4a LINE L1 -1318 4811 4617 486 146 0 62 chr1 69755712 69755808 -172908545 + FLAM SINE Alu 43 132 -11 2475 56 17 0 chr1 69755851 69756153 -172908200 - AluY SINE Alu -4 307 1 2263 78 0 32 chr1 69756656 69756964 -172907389 + AluSc SINE Alu 1 298 -11 425 289 45 42 chr1 69758252 69758532 -172905821 - L1MEd LINE L1 -3776 2385 2102 2238 88 20 3 chr1 69758532 69758828 -172905525 - AluSx SINE Alu -11 301 1 425 289 45 42 chr1 69758828 69758984 -172905369 - L1MEd LINE L1 -4059 2102 1948 1018 272 87 32 chr1 69759307 69759778 -172904575 + MLT1H LTR MaLR 12 544 -5 579 247 123 47 chr1 69759792 69760468 -172903885 - L1MEd LINE L1 -4765 1545 802 505 298 12 42 chr1 69760525 69760693 -172903660 - L1MEd LINE L1 -5439 680 518 3025 192 46 20 chr1 69761409 69762101 -172902252 + L1MB8 LINE L1 5428 6137 -41 275 176 0 73 chr1 69762107 69762175 -172902178 + L1MB8 LINE L1 6110 6172 -6 2174 197 24 31 chr1 69762184 69762290 -172902063 + L1MB7 LINE L1 5727 5832 -352 2332 76 0 35 chr1 69762290 69762604 -172901749 + AluSc SINE Alu 1 303 -6 2174 197 24 31 chr1 69762604 69762799 -172901554 + L1MB7 LINE L1 5832 6027 -157 1586 178 48 58 chr1 69762799 69763193 -172901160 + MLT1B LTR MaLR 1 390 0 2174 197 24 31 chr1 69763193 69763342 -172901011 + L1MB7 LINE L1 6027 6175 -9 30 0 0 0 chr1 69764757 69764787 -172899566 + AT_rich Low_complexity Low_complexity 1 30 0 1187 229 45 136 chr1 69766148 69766392 -172897961 + L2 LINE L2 2826 2996 -317 528 208 94 0 chr1 69766392 69766498 -172897855 + FLAM_C SINE Alu 1 116 -17 1187 229 45 136 chr1 69766498 69766790 -172897563 + L2 LINE L2 2996 3313 0 7304 34 17 0 chr1 69766853 69767726 -172896627 + L1PA5 LINE L1 5126 6018 -136 189 0 0 0 chr1 69767726 69767747 -172896606 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 7304 34 17 0 chr1 69767747 69767887 -172896466 + L1PA5 LINE L1 6018 6154 0 180 0 0 0 chr1 69768501 69768521 -172895832 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 400 311 228 15 chr1 69768813 69769019 -172895334 + MIR SINE MIR 7 256 -6 1486 232 40 66 chr1 69771018 69771536 -172892817 + MLT1D LTR MaLR 1 505 0 1921 162 0 6 chr1 69771837 69772151 -172892202 - AluSx SINE Alu 0 312 1 412 370 6 0 chr1 69772248 69772410 -172891943 - MIR SINE MIR -70 192 30 701 244 48 19 chr1 69772500 69772913 -172891440 + L1MB4 LINE L1 4873 5330 -816 8483 224 76 45 chr1 69772956 69774596 -172889757 + L1MDa LINE L1 14 1601 -4939 2085 108 0 21 chr1 69774596 69774910 -172889443 + AluSx SINE Alu 1 308 0 8483 224 76 45 chr1 69774910 69775092 -172889261 + L1MDa LINE L1 1601 1776 -4764 1839 160 0 13 chr1 69775092 69775399 -172888954 + AluSx SINE Alu 1 303 -9 8483 224 76 45 chr1 69775399 69776816 -172887537 + L1MDa LINE L1 1776 3364 -3176 4113 167 5 10 chr1 69776820 69777244 -172887109 + L1MB4 LINE L1 5412 5832 -348 1839 171 17 0 chr1 69777244 69777536 -172886817 + AluJb SINE Alu 1 297 -15 4113 167 5 10 chr1 69777536 69777879 -172886474 + L1MB4 LINE L1 5832 6175 -5 207 163 20 20 chr1 69777884 69777933 -172886420 + (TA)n Simple_repeat Simple_repeat 1 49 0 1042 259 17 41 chr1 69778085 69778379 -172885974 - L2 LINE L2 -2353 961 675 21 71 0 0 chr1 69778643 69778685 -172885668 + AT_rich Low_complexity Low_complexity 1 42 0 2290 100 0 0 chr1 69778904 69779203 -172885150 + AluSg SINE Alu 1 299 -11 24 32 0 0 chr1 69779920 69779951 -172884402 + AT_rich Low_complexity Low_complexity 1 31 0 182 245 20 0 chr1 69780150 69780199 -172884154 - L2 LINE L2 0 3272 3223 1680 136 63 17 chr1 69780330 69780632 -172883721 + L1MC2 LINE L1 5711 6026 -318 2280 130 11 22 chr1 69780632 69781000 -172883353 + THE1B LTR MaLR 1 364 0 841 165 66 33 chr1 69781024 69781206 -172883147 + L1MC2 LINE L1 6149 6336 -8 2099 114 7 10 chr1 69781414 69781713 -172882640 - AluSx SINE Alu -14 298 1 2175 76 16 54 chr1 69781848 69782164 -172882189 + AluSc SINE Alu 1 304 -5 317 200 93 50 chr1 69782280 69782306 -172882047 - MER104 DNA Tc2 -1721 177 154 2219 100 0 13 chr1 69782306 69782616 -172881737 + AluY SINE Alu 1 306 -5 317 200 93 50 chr1 69782616 69782729 -172881624 - MER104 DNA Tc2 -1744 154 32 1396 120 0 10 chr1 69783957 69784157 -172880196 + AluSg/x SINE Alu 102 299 -13 2224 98 0 7 chr1 69784159 69784478 -172879875 + AluSx SINE Alu 1 317 0 445 179 42 0 chr1 69784514 69784609 -172879744 + L1MC5 LINE L1 7273 7371 -590 329 234 102 71 chr1 69784783 69785009 -172879344 + L1MC5 LINE L1 7507 7739 -222 1455 170 3 99 chr1 69785042 69785365 -172878988 + AluSq SINE Alu 9 300 -13 6080 128 189 92 chr1 69786128 69787694 -172876659 + pTR5 LTR ERV1 375 2438 0 256 302 63 0 chr1 69787829 69787892 -172876461 + L2 LINE L2 3159 3225 -47 217 283 0 0 chr1 69787892 69787952 -172876401 + GA-rich Low_complexity Low_complexity 1 60 0 308 298 147 53 chr1 69788504 69788729 -172875624 - L1MC4a LINE L1 -1731 6077 5832 338 242 63 11 chr1 69788743 69788838 -172875515 - MIR SINE MIR -9 253 154 254 214 110 76 chr1 69788931 69789076 -172875277 - L1MC4a LINE L1 -538 5821 5672 25 31 0 0 chr1 69789134 69789166 -172875187 + AT_rich Low_complexity Low_complexity 1 32 0 190 315 41 27 chr1 69789176 69789249 -172875104 - MIR SINE MIR -95 113 40 189 274 0 0 chr1 69789829 69789880 -172874473 + MIR SINE MIR 119 169 -93 4728 194 33 59 chr1 69790193 69791556 -172872797 + L1MB7 LINE L1 4007 5404 -780 1681 151 48 0 chr1 69791556 69791827 -172872526 + AluJo SINE Alu 1 284 -28 4728 194 33 59 chr1 69791827 69791924 -172872429 + L1MB7 LINE L1 5404 5502 -682 2346 83 0 10 chr1 69791924 69792225 -172872128 + AluY SINE Alu 1 298 -13 4728 194 33 59 chr1 69792225 69792968 -172871385 + L1MB7 LINE L1 5502 6172 -12 455 252 193 69 chr1 69793623 69793841 -172870512 + MLT1K LTR MaLR 109 353 -235 1702 239 78 68 chr1 69794175 69794272 -172870081 + L1ME3A LINE L1 3988 4083 -2087 1834 174 10 6 chr1 69794272 69794583 -172869770 + AluJo SINE Alu 1 312 0 1702 239 78 68 chr1 69794583 69795279 -172869074 + L1ME3A LINE L1 4083 4771 -1399 1152 70 86 16 chr1 69795279 69795465 -172868888 + L1MA3 LINE L1 6106 6304 -1 1702 239 78 68 chr1 69795465 69796172 -172868181 + L1ME3A LINE L1 4771 5594 -576 8994 34 5 0 chr1 69796172 69797971 -172866382 + L1PA5 LINE L1 4353 6154 0 1702 239 78 68 chr1 69797971 69798323 -172866030 + L1ME3A LINE L1 5594 5941 -229 188 396 122 4 chr1 69798475 69798705 -172865648 - L2 LINE L2 -357 2957 2701 1800 141 29 0 chr1 69800086 69800363 -172863990 + AluJb SINE Alu 11 295 -17 1805 92 122 22 chr1 69800381 69800652 -172863701 + AluSx SINE Alu 1 298 -14 202 249 26 18 chr1 69800686 69800750 -172863603 + MIR SINE MIR 91 144 -64 283 121 136 30 chr1 69800845 69800911 -172863442 - MIR SINE MIR -53 209 137 882 234 22 22 chr1 69801533 69801755 -172862598 - MIR SINE MIR -18 244 23 559 307 31 75 chr1 69801891 69802275 -172862078 + L2 LINE L2 2134 2500 -814 2926 3 0 21 chr1 69802586 69802911 -172861442 - AluYb8 SINE Alu 0 318 1 743 281 40 13 chr1 69803036 69803264 -172861089 - MIR SINE MIR -27 235 2 1080 118 48 43 chr1 69803316 69803503 -172860850 - AluJo SINE Alu -124 188 1 24 0 0 0 chr1 69804611 69804635 -172859718 + GC_rich Low_complexity Low_complexity 1 24 0 231 88 0 0 chr1 69804695 69804729 -172859624 + (CGG)n Simple_repeat Simple_repeat 3 36 0 370 271 59 25 chr1 69805407 69805525 -172858828 - MIR SINE MIR -93 169 48 489 34 0 0 chr1 69805595 69805654 -172858699 + (TA)n Simple_repeat Simple_repeat 1 59 0 257 333 50 17 chr1 69805991 69806111 -172858242 - MIR SINE MIR -60 148 25 657 214 75 25 chr1 69806170 69806329 -172858024 - FRAM SINE Alu -6 170 4 207 326 63 63 chr1 69806428 69806523 -172857830 - L2 LINE L2 -54 3218 3124 623 259 107 24 chr1 69806557 69806762 -172857591 + MIR SINE MIR 41 262 0 369 0 0 0 chr1 69807270 69807311 -172857042 + (CA)n Simple_repeat Simple_repeat 2 42 0 367 241 218 8 chr1 69807506 69807639 -172856714 + MLT1K LTR MaLR 357 517 -71 311 321 202 0 chr1 69807723 69807832 -172856521 - L2 LINE L2 -1 3271 3141 2302 84 0 3 chr1 69808472 69808768 -172855585 - AluY SINE Alu -16 295 1 393 250 12 0 chr1 69809153 69809237 -172855116 + L2 LINE L2 3188 3272 0 2584 119 8 16 chr1 69809268 69809646 -172854707 - THE1C LTR MaLR 0 375 1 693 250 91 14 chr1 69809647 69809867 -172854486 - LTR16C LTR ERVL 0 491 255 3845 166 95 49 chr1 69810322 69810919 -172853434 - MER21B LTR ERV1 -53 810 169 2373 134 19 25 chr1 69810919 69811285 -172853068 - THE1B LTR MaLR 0 364 1 3845 166 95 49 chr1 69811285 69811459 -172852894 - MER21B LTR ERV1 -694 169 4 228 264 69 0 chr1 69811460 69811532 -172852821 + L1MC5 LINE L1 7071 7147 -814 927 206 69 5 chr1 69811565 69811754 -172852599 - MER3 DNA MER1_type -8 201 1 447 284 123 9 chr1 69811971 69812182 -172852171 + L1MC5 LINE L1 7260 7494 -467 3211 169 42 26 chr1 69812188 69812736 -172851617 + L1MB8 LINE L1 5108 5646 -532 459 0 0 0 chr1 69812736 69812787 -172851566 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 3211 169 42 26 chr1 69812787 69812905 -172851448 + L1MB8 LINE L1 5646 5761 -417 1656 132 165 18 chr1 69812905 69813232 -172851121 + THE1C LTR MaLR 1 375 0 3211 169 42 26 chr1 69813232 69813328 -172851025 + L1MB8 LINE L1 5761 5890 -288 456 207 133 15 chr1 69814140 69814275 -172850078 - MLT1E1 LTR MaLR -503 151 1 543 298 13 19 chr1 69814446 69814604 -172849749 + MIR3 SINE MIR 16 172 -36 191 347 99 25 chr1 69814653 69814774 -172849579 + L3b LINE CR1 1421 1550 -33 2319 84 10 0 chr1 69814784 69815083 -172849270 + AluSp SINE Alu 1 302 -11 1654 156 10 28 chr1 69815351 69815664 -172848689 - AluJo SINE Alu 0 308 1 44240 35 3 1 chr1 69815990 69821983 -172842370 - L1PA4 LINE L1 -3 6152 147 1070 180 12 0 chr1 69822017 69822184 -172842169 - FAM SINE Alu -6 169 1 2242 110 3 3 chr1 69822189 69822497 -172841856 - AluSg SINE Alu -2 308 1 438 36 0 0 chr1 69822777 69822833 -172841520 + (TTG)n Simple_repeat Simple_repeat 1 56 0 1797 169 0 0 chr1 69822835 69823114 -172841239 - AluJb SINE Alu -33 279 1 2215 61 11 21 chr1 69823135 69823415 -172840938 - AluY SINE Alu -34 277 1 2027 118 31 3 chr1 69823415 69823703 -172840650 - AluSx SINE Alu -16 296 1 589 319 47 79 chr1 69823707 69824376 -172839977 - L2 LINE L2 -15 3257 2606 406 224 61 0 chr1 69824402 69824500 -172839853 - MLT1J LTR MaLR -30 481 378 628 236 30 24 chr1 69824522 69824687 -172839666 - MLT1J LTR MaLR -345 166 1 401 283 147 59 chr1 69824718 69824978 -172839375 - L2 LINE L2 -744 2570 2334 2233 126 0 0 chr1 69824978 69825280 -172839073 + AluSx SINE Alu 1 302 -10 401 283 147 59 chr1 69825280 69825564 -172838789 - L2 LINE L2 -980 2334 1978 2194 117 3 0 chr1 69825577 69825884 -172838469 + AluSx SINE Alu 3 310 -2 241 289 173 0 chr1 69825997 69826101 -172838252 + MIR SINE MIR 138 259 -3 721 214 15 0 chr1 69826203 69826334 -172838019 - FLAM_A SINE Alu 0 133 1 454 284 7 39 chr1 69826707 69826862 -172837491 + MIR SINE MIR 81 230 -32 669 238 22 58 chr1 69827461 69827684 -172836669 + MIR SINE MIR 48 262 0 1311 98 0 0 chr1 69827792 69827965 -172836388 + AluSg/x SINE Alu 130 302 -8 218 149 0 85 chr1 69827974 69828021 -172836332 - MIR SINE MIR -81 127 85 1178 184 233 117 chr1 69828319 69828993 -172835360 + LTR41 LTR ERVL 16 767 -6 1917 161 0 0 chr1 69829657 69829956 -172834397 + AluJb SINE Alu 1 299 -13 972 291 123 55 chr1 69830341 69830705 -172833648 + MLT1K LTR MaLR 42 452 -136 1636 139 46 43 chr1 69830705 69831028 -172833325 + MER33 DNA MER1_type 1 324 0 972 291 123 55 chr1 69831028 69831175 -172833178 + MLT1K LTR MaLR 452 588 0 1910 97 112 0 chr1 69831183 69831461 -172832892 + AluSq SINE Alu 1 309 -4 2360 90 0 7 chr1 69831983 69832283 -172832070 - AluSx SINE Alu -14 298 1 331 321 184 5 chr1 69832592 69832782 -172831571 - MIR SINE MIR -26 236 13 352 231 144 0 chr1 69833630 69833734 -172830619 + L2 LINE L2 3195 3313 0 24 0 0 0 chr1 69833734 69833758 -172830595 + AT_rich Low_complexity Low_complexity 1 24 0 2330 86 0 46 chr1 69833798 69834125 -172830228 - AluSx SINE Alu 0 312 1 291 164 0 0 chr1 69834362 69834423 -172829930 + C-rich Low_complexity Low_complexity 5 65 0 1716 118 4 0 chr1 69834878 69835106 -172829247 + AluSx SINE Alu 1 229 -83 630 148 0 35 chr1 69835114 69835256 -172829097 + (GGAA)n Simple_repeat Simple_repeat 4 140 0 279 206 159 135 chr1 69835259 69835311 -172829042 - LTR67 LTR ERVL -31 526 477 2194 123 0 0 chr1 69835311 69835603 -172828750 - AluSx SINE Alu -20 292 1 279 206 159 135 chr1 69835603 69835720 -172828633 - LTR67 LTR ERVL -80 477 353 519 263 234 11 chr1 69835804 69835979 -172828374 - LTR67 LTR ERVL -335 222 9 2208 75 57 0 chr1 69836080 69836362 -172827991 - AluY SINE Alu -13 298 1 1780 132 17 21 chr1 69836522 69836811 -172827542 + AluJb SINE Alu 1 288 -24 2297 85 20 0 chr1 69836812 69837106 -172827247 - AluSg SINE Alu -10 300 1 304 182 61 0 chr1 69837128 69837194 -172827159 - L1MA10 LINE L1 -7 6327 6258 826 94 111 0 chr1 69838444 69838561 -172825792 + AluY SINE Alu 2 131 -180 1508 70 0 0 chr1 69838600 69838785 -172825568 + AluY SINE Alu 115 299 -12 608 268 14 7 chr1 69838832 69838974 -172825379 + MIR SINE MIR 11 153 -109 248 281 29 65 chr1 69838990 69839129 -172825224 - L2 LINE L2 -60 3253 3120 1015 187 19 38 chr1 69839154 69839363 -172824990 + MIR SINE MIR 36 240 -22 669 293 104 12 chr1 69839379 69839638 -172824715 - L2 LINE L2 -180 3133 2851 465 187 71 182 chr1 69839644 69839739 -172824614 - MLT1E3 LTR MaLR 0 624 520 1760 165 16 36 chr1 69839739 69840048 -172824305 + AluJb SINE Alu 5 307 -5 1780 164 19 19 chr1 69840054 69840364 -172823989 + AluJo SINE Alu 1 310 -2 465 187 71 182 chr1 69840364 69840459 -172823894 - MLT1E3 LTR MaLR -109 515 449 389 153 0 14 chr1 69840508 69840580 -172823773 + MLT1E LTR MaLR 523 593 0 1780 107 157 0 chr1 69841365 69841626 -172822727 - AluSq SINE Alu 0 303 2 283 339 59 0 chr1 69842290 69842408 -172821945 + MIR SINE MIR 53 177 -85 336 301 146 0 chr1 69842920 69843043 -172821310 - L2 LINE L2 0 3313 3173 180 111 0 0 chr1 69843082 69843109 -172821244 + (A)n Simple_repeat Simple_repeat 1 27 0 2539 74 0 0 chr1 69843128 69843437 -172820916 - AluSg SINE Alu -1 309 1 622 246 88 52 chr1 69843437 69843737 -172820616 - HAL1 LINE L1 -1013 1494 1175 2334 112 0 0 chr1 69843737 69844049 -172820304 - AluSx SINE Alu 0 312 1 622 246 88 52 chr1 69844049 69844134 -172820219 - HAL1 LINE L1 -1332 1175 1095 477 340 68 4 chr1 69844109 69844374 -172819979 - HAL1 LINE L1 -2210 297 16 * 1966 187 93 62 chr1 69844486 69844957 -172819396 - MER66B LTR ERV1 0 486 1 1184 155 58 47 chr1 69845018 69845276 -172819077 - MER63 DNA MER1_type -7 1054 794 35 0 0 0 chr1 69845279 69845314 -172819039 + AT_rich Low_complexity Low_complexity 1 35 0 2306 101 0 0 chr1 69845361 69845659 -172818694 - AluY SINE Alu -13 298 1 2367 231 88 53 chr1 69846131 69847092 -172817261 - HAL1b LINE L1 0 2507 430 2185 108 0 10 chr1 69847534 69847839 -172816514 - AluSq SINE Alu -11 302 1 1636 189 10 3 chr1 69847842 69848133 -172816220 - AluJo SINE Alu -17 295 3 2165 95 7 16 chr1 69848204 69848510 -172815843 - AluSx SINE Alu -9 303 1 809 154 0 15 chr1 69849525 69849655 -172814698 - AluSg/x SINE Alu -54 256 129 2175 125 0 7 chr1 69849781 69850085 -172814268 + AluSx SINE Alu 1 302 -10 1842 158 3 7 chr1 69850129 69850421 -172813932 - L1PA15 LINE L1 -3 6162 5872 2298 112 0 3 chr1 69851027 69851339 -172813014 + AluSp SINE Alu 1 311 -2 235 266 23 102 chr1 69851534 69851662 -172812691 - L1ME LINE L1 -382 5739 5622 439 191 36 0 chr1 69851662 69851746 -172812607 - MLT1K LTR MaLR 0 588 502 1006 251 215 11 chr1 69851883 69852241 -172812112 - L1MEc LINE L1 -5931 465 35 251 234 39 70 chr1 69852319 69852447 -172811906 - MLT1K LTR MaLR -87 501 378 2583 47 0 0 chr1 69853086 69853382 -172810971 - AluY SINE Alu -15 296 1 317 135 93 5 chr1 69853408 69853489 -172810864 + AluS SINE Alu 30 80 -222 213 39 0 0 chr1 69853595 69853621 -172810732 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 447 322 33 24 chr1 69853791 69854002 -172810351 + L2 LINE L2 2448 2660 -654 493 305 8 16 chr1 69854012 69854140 -172810213 + MLT1K LTR MaLR 23 149 -439 376 235 39 39 chr1 69854447 69854549 -172809804 + MLT1L LTR MaLR 508 609 -6 241 217 145 14 chr1 69854661 69854730 -172809623 + MIR SINE MIR 160 237 -25 2316 102 6 13 chr1 69854966 69855279 -172809074 - AluSq SINE Alu -2 311 1 207 347 50 114 chr1 69855318 69855580 -172808773 + L2 LINE L2 2989 3233 -39 887 282 40 0 chr1 69855799 69856072 -172808281 + L1PB1 LINE L1 6 289 -6574 15495 174 20 8 chr1 69856078 69860063 -172804290 + L1PB1 LINE L1 2478 6506 -361 275 126 0 68 chr1 69860068 69860171 -172804182 + (TA)n Simple_repeat Simple_repeat 2 97 0 2329 144 3 11 chr1 69860172 69860540 -172803813 + L1PB1 LINE L1 6499 6863 -4 28 0 0 0 chr1 69860540 69860568 -172803785 + AT_rich Low_complexity Low_complexity 1 28 0 953 188 0 0 chr1 69860568 69860752 -172803601 + AluJb SINE Alu 129 312 0 297 47 23 0 chr1 69861023 69861066 -172803287 - MADE1 DNA Mariner -36 44 1 479 217 9 9 chr1 69861197 69861303 -172803050 - MLT1K LTR MaLR -2 586 481 659 330 54 12 chr1 69861424 69861682 -172802671 + LTR16A LTR ERVL 20 288 -162 786 203 0 8 chr1 69862287 69862420 -172801933 + FLAM_A SINE Alu 1 132 -1 22 0 0 0 chr1 69862556 69862578 -172801775 + AT_rich Low_complexity Low_complexity 1 22 0 1815 134 18 4 chr1 69862644 69862944 -172801409 + AluSg SINE Alu 1 304 0 605 223 8 0 chr1 69863498 69863619 -172800734 - MIR SINE MIR -31 231 110 4173 213 27 21 chr1 69863619 69864622 -172799731 + L1M4 LINE L1 4023 5031 -1115 1190 176 3 97 chr1 69864625 69864866 -172799487 - Zaphod DNA AcHobo -119 3912 3711 1496 214 9 83 chr1 69864866 69865287 -172799066 - MLT1B LTR MaLR 0 390 1 1190 176 3 97 chr1 69865287 69865386 -172798967 - Zaphod DNA AcHobo -320 3711 3604 842 173 57 74 chr1 69865370 69865827 -172798526 - Zaphod DNA AcHobo -3022 1009 561 * 1349 211 62 79 chr1 69865837 69865876 -172798477 - MLT1E LTR MaLR -8 585 547 2090 113 10 7 chr1 69865876 69866169 -172798184 - AluSq SINE Alu -19 294 1 1349 211 62 79 chr1 69866169 69866546 -172797807 - MLT1E LTR MaLR -46 547 176 263 250 0 16 chr1 69866558 69866622 -172797731 - MLT1E LTR MaLR -591 63 1 2029 235 30 78 chr1 69866628 69867193 -172797160 - Zaphod DNA AcHobo -3478 553 16 428 302 72 24 chr1 69867376 69867667 -172796686 - L1ME4a LINE L1 -4 6117 5813 450 36 0 0 chr1 69867806 69867862 -172796491 + (TC)n Simple_repeat Simple_repeat 2 57 0 225 60 0 80 chr1 69868186 69868236 -172796117 - Alu SINE Alu -254 48 3 2134 109 3 16 chr1 69868321 69868632 -172795721 + AluSq SINE Alu 1 307 -6 1233 124 0 0 chr1 69868821 69868990 -172795363 + AluSq SINE Alu 1 169 -144 6181 146 175 90 chr1 69868990 69870554 -172793799 + pTR5 LTR ERV1 743 2438 0 30141 86 6 9 chr1 69870570 69875411 -172788942 + HERV17 LTR ERV1 40 4954 -3445 2025 104 10 29 chr1 69875404 69876264 -172788089 + HERV17 LTR ERV1 709 1740 -5156 * 5955 109 10 37 chr1 69876243 69877698 -172786655 + HERV17 LTR ERV1 504 8353 -46 4225 114 213 22 chr1 69877704 69878394 -172785959 + LTR12 LTR ERV1 5 826 0 934 133 0 0 chr1 69878395 69878538 -172785815 + AluSc SINE Alu 165 307 -2 2105 92 60 14 chr1 69878626 69878910 -172785443 + AluY SINE Alu 1 297 -14 189 0 0 0 chr1 69878944 69878965 -172785388 + (TG)n Simple_repeat Simple_repeat 2 22 0 508 289 8 78 chr1 69879116 69879358 -172784995 - L2 LINE L2 0 3313 3089 1851 156 31 0 chr1 69879379 69879667 -172784686 - AluJb SINE Alu -15 297 1 3396 207 31 4 chr1 69879685 69880370 -172783983 - Charlie1a DNA MER1_type -742 713 11 307 366 8 8 chr1 69880443 69880574 -172783779 - MIR SINE MIR -111 151 21 22 56 0 0 chr1 69880774 69880810 -172783543 + AT_rich Low_complexity Low_complexity 1 36 0 369 303 36 55 chr1 69880911 69881076 -172783277 + L1ME LINE L1 406 567 -5552 2013 99 8 0 chr1 69881084 69881347 -172783006 + AluSx SINE Alu 23 287 -25 438 20 0 0 chr1 69881353 69881404 -172782949 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2347 184 27 86 chr1 69881500 69881698 -172782655 + MER82 DNA MER2_type 127 335 -318 415 127 16 0 chr1 69881698 69881761 -172782592 - L1MA9 LINE L1 0 6312 6249 2347 184 27 86 chr1 69881761 69882122 -172782231 + MER82 DNA MER2_type 335 653 0 455 313 92 25 chr1 69882127 69882495 -172781858 + L1ME LINE L1 612 1004 -5115 371 306 70 35 chr1 69882570 69882939 -172781414 + L1ME LINE L1 5364 5745 -359 631 314 65 22 chr1 69883087 69883577 -172780776 - L1ME4a LINE L1 -216 5905 5395 2316 71 3 0 chr1 69883589 69883898 -172780455 - AluY SINE Alu 0 310 1 210 382 0 0 chr1 69884166 69884255 -172780098 - L2 LINE L2 -1520 1794 1706 2076 100 0 59 chr1 69884369 69884690 -172779663 - AluSx SINE Alu -10 302 1 25 65 0 0 chr1 69884701 69884747 -172779606 + AT_rich Low_complexity Low_complexity 1 46 0 7366 95 5 15 chr1 69885353 69885538 -172778815 - L1MA3 LINE L1 0 7724 7539 2038 121 39 0 chr1 69885538 69885820 -172778533 + AluSx SINE Alu 1 293 -19 7366 95 5 15 chr1 69885820 69886695 -172777658 - L1MA3 LINE L1 -185 7539 6675 14698 111 15 83 chr1 69886716 69886978 -172777375 - L1MA3 LINE L1 -4150 3415 3137 2126 66 10 75 chr1 69886978 69887283 -172777070 - AluY SINE Alu -26 285 1 14698 111 15 83 chr1 69887283 69887294 -172777059 - L1MA3 LINE L1 -4428 3137 3127 2346 70 3 0 chr1 69887294 69887580 -172776773 - AluSq SINE Alu -26 287 1 14698 111 15 83 chr1 69887580 69889865 -172774488 - L1MA3 LINE L1 -4438 3127 1029 3137 206 24 34 chr1 69889865 69890577 -172773776 - L1MB5 LINE L1 -16 6158 5454 2048 231 32 34 chr1 69890585 69891152 -172773201 + MER74B LTR ERVL 1 566 -56 2129 161 64 13 chr1 69891203 69891513 -172772840 - L1M3 LINE L1 -729 5451 5095 1962 160 6 10 chr1 69891513 69891825 -172772528 - AluJo SINE Alu -1 311 1 2129 161 64 13 chr1 69891825 69892065 -172772288 - L1M3 LINE L1 -1085 5095 4869 1947 172 0 0 chr1 69892089 69892397 -172771956 - AluJo SINE Alu -4 308 1 1994 129 26 43 chr1 69892415 69892457 -172771896 - L1MB3 LINE L1 -10 6173 6132 2000 105 0 0 chr1 69892457 69892714 -172771639 - AluSg SINE Alu -15 295 39 1994 129 26 43 chr1 69892714 69893021 -172771332 - L1MB3 LINE L1 -51 6132 5830 348 370 27 33 chr1 69893214 69893514 -172770839 + L2 LINE L2 309 606 -2708 429 313 157 46 chr1 69893520 69893816 -172770537 + L2 LINE L2 2162 2424 -890 4415 154 37 3 chr1 69893816 69894498 -172769855 + MER39 LTR ERV1 1 705 -2 429 313 157 46 chr1 69894498 69894690 -172769663 + L2 LINE L2 2424 2593 -721 2491 83 0 3 chr1 69894690 69895003 -172769350 - AluSx SINE Alu 0 312 1 429 313 157 46 chr1 69895003 69895091 -172769262 + L2 LINE L2 2593 2886 -428 1822 133 0 8 chr1 69895454 69895717 -172768636 + AluJb SINE Alu 1 261 -51 821 56 0 19 chr1 69895905 69896013 -172768340 - AluY SINE Alu -5 306 201 195 204 0 0 chr1 69896365 69896409 -172767944 + (CA)n Simple_repeat Simple_repeat 2 45 0 195 42 0 0 chr1 69896415 69896439 -172767914 + (TG)n Simple_repeat Simple_repeat 2 25 0 2255 107 0 10 chr1 69896621 69896920 -172767433 - AluSx SINE Alu -16 296 1 206 217 17 67 chr1 69896937 69896997 -172767356 - L2 LINE L2 -9 3263 3207 234 0 0 0 chr1 69898590 69898616 -172765737 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2206 90 0 3 chr1 69898620 69898909 -172765444 - AluSx SINE Alu -24 288 1 2216 102 3 6 chr1 69898965 69899278 -172765075 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 69899418 69899439 -172764914 + (T)n Simple_repeat Simple_repeat 1 21 0 205 273 0 0 chr1 69901823 69901878 -172762475 - MIR SINE MIR -111 151 97 467 227 58 112 chr1 69901954 69902232 -172762121 - L2 LINE L2 -3 3310 3048 374 273 157 23 chr1 69902376 69902548 -172761805 - L2 LINE L2 0 3313 3119 624 292 108 18 chr1 69902570 69902847 -172761506 - L2 LINE L2 -640 2674 2373 738 281 23 53 chr1 69903331 69903594 -172760759 + MIR SINE MIR 7 261 -1 2955 244 132 62 chr1 69904007 69904162 -172760191 - L1MC4 LINE L1 0 8042 7899 270 0 0 0 chr1 69904162 69904192 -172760161 + (CA)n Simple_repeat Simple_repeat 2 31 0 2955 244 132 62 chr1 69904192 69905263 -172759090 - L1MC4 LINE L1 -143 7899 6905 2420 55 0 13 chr1 69905263 69905570 -172758783 + AluY SINE Alu 1 303 -8 2955 244 132 62 chr1 69905570 69905651 -172758702 - L1MC4 LINE L1 -1137 6905 6831 2272 88 7 0 chr1 69905651 69905945 -172758408 - AluSp SINE Alu -17 296 1 2955 244 132 62 chr1 69905945 69906190 -172758163 - L1MC4 LINE L1 -1211 6831 6379 328 180 190 40 chr1 69906220 69906320 -172758033 - L1MC4a LINE L1 -1470 6338 6224 288 240 164 0 chr1 69906925 69907029 -172757324 + L2 LINE L2 3190 3310 -3 2094 177 29 3 chr1 69907138 69907483 -172756870 - MSTC LTR MaLR 0 428 75 287 373 40 0 chr1 69907503 69907653 -172756700 + L2 LINE L2 2321 2476 -838 2296 92 0 0 chr1 69907733 69908026 -172756327 - AluSg1 SINE Alu -16 293 1 370 321 108 33 chr1 69908099 69908311 -172756042 + L3 LINE CR1 1182 1409 -168 314 274 9 57 chr1 69908447 69908553 -172755800 + L3 LINE CR1 1428 1528 -49 636 106 0 0 chr1 69908621 69908715 -172755638 - AluY SINE Alu -15 296 203 2402 67 7 7 chr1 69908829 69909126 -172755227 - AluSp SINE Alu -16 297 1 1737 151 54 10 chr1 69909271 69909569 -172754784 + AluJb SINE Alu 2 312 0 955 171 0 34 chr1 69911622 69911797 -172752556 + FRAM SINE Alu 1 168 -8 22 0 0 0 chr1 69912091 69912113 -172752240 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 69912148 69912168 -172752185 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr1 69912228 69912252 -172752101 + AT_rich Low_complexity Low_complexity 1 24 0 253 271 121 21 chr1 69912667 69912766 -172751587 - HAL1b LINE L1 -1 1347 1229 2202 118 3 0 chr1 69912766 69913070 -172751283 + AluSx SINE Alu 1 305 -7 253 271 121 21 chr1 69913070 69913110 -172751243 - HAL1b LINE L1 -119 1229 1194 453 298 122 63 chr1 69913458 69913764 -172750589 - L1M LINE L1 -817 5329 5043 2114 130 0 10 chr1 69913764 69914063 -172750290 - AluSx SINE Alu -16 296 1 453 298 122 63 chr1 69914063 69914475 -172749878 - L1M LINE L1 -1103 5043 4672 2252 111 0 0 chr1 69914586 69914883 -172749470 - AluSg SINE Alu -13 297 1 1331 191 88 7 chr1 69914884 69915157 -172749196 - AluJo SINE Alu -17 295 1 2375 93 6 8 chr1 69915565 69915918 -172748435 - L1MA2 LINE L1 0 6304 5953 239 231 222 0 chr1 69916231 69916348 -172748005 - L1ME4a LINE L1 -2 6119 5977 221 182 23 0 chr1 69916682 69916726 -172747627 - L2 LINE L2 -4 3309 3265 199 277 26 154 chr1 69916783 69916978 -172747375 - L2 LINE L2 -171 3101 2932 234 259 103 0 chr1 69917125 69917183 -172747170 - L2 LINE L2 -36 3277 3214 441 305 0 0 chr1 69917193 69917298 -172747055 + L2 LINE L2 2198 2302 -1012 417 250 11 0 chr1 69917318 69917406 -172746947 + L2 LINE L2 3191 3279 -34 857 136 0 111 chr1 69917432 69917618 -172746735 + AluSg/x SINE Alu 137 301 -11 2509 58 3 0 chr1 69917618 69917926 -172746427 + AluY SINE Alu 1 309 -2 857 136 0 111 chr1 69917926 69917937 -172746416 + AluSg/x SINE Alu 301 312 0 768 320 101 59 chr1 69917946 69918239 -172746114 + L2 LINE L2 2305 2584 -730 1444 123 21 17 chr1 69918239 69918474 -172745879 + MER46A DNA MER2_type 1 236 0 768 320 101 59 chr1 69918474 69918786 -172745567 + L2 LINE L2 2584 2935 -379 2290 98 0 16 chr1 69920023 69920330 -172744023 - AluSg SINE Alu -8 302 1 26 0 0 0 chr1 69920834 69920860 -172743493 + AT_rich Low_complexity Low_complexity 1 26 0 586 306 61 10 chr1 69921640 69921836 -172742517 - MIR SINE MIR -23 239 34 487 264 9 0 chr1 69922011 69922117 -172742236 - MIR SINE MIR 0 262 156 206 314 100 29 chr1 69922099 69922239 -172742114 - L2 LINE L2 -257 3015 2866 * 21 0 0 0 chr1 69922452 69922473 -172741880 + AT_rich Low_complexity Low_complexity 1 21 0 380 237 0 32 chr1 69923088 69923181 -172741172 + MER21B LTR ERV1 1 90 -773 270 243 43 14 chr1 69923202 69923272 -172741081 + MER21B LTR ERV1 18 89 -774 2296 210 113 52 chr1 69923294 69924003 -172740350 + MER21B LTR ERV1 52 803 -60 278 339 210 19 chr1 69924103 69924728 -172739625 - L2 LINE L2 -718 2596 1853 1781 137 0 40 chr1 69924875 69925174 -172739179 - AluJb SINE Alu -20 292 6 340 318 31 31 chr1 69925244 69925373 -172738980 + L1MC4 LINE L1 6577 6705 -1337 312 323 0 0 chr1 69925319 69925415 -172738938 - L1MC4 LINE L1 -1333 6709 6614 * 222 202 53 26 chr1 69925423 69925537 -172738816 + (TATAA)n Simple_repeat Simple_repeat 5 121 0 238 123 35 0 chr1 69925538 69925595 -172738758 + (TA)n Simple_repeat Simple_repeat 2 60 0 641 268 100 47 chr1 69925627 69926139 -172738214 + L1ME LINE L1 5257 5795 -367 377 280 96 16 chr1 69926139 69926264 -172738089 - L2 LINE L2 -18 3295 3161 297 259 57 32 chr1 69926398 69926556 -172737797 - L1MC4 LINE L1 -966 7076 6915 21 0 0 0 chr1 69927349 69927370 -172736983 + AT_rich Low_complexity Low_complexity 1 21 0 2148 206 61 46 chr1 69927533 69927595 -172736758 - L1MCa LINE L1 -3607 2819 2759 1216 148 30 0 chr1 69927595 69927798 -172736555 + MER6B DNA MER2_type 2 210 0 2148 206 61 46 chr1 69927798 69927935 -172736418 - L1MCa LINE L1 -3667 2759 2626 12343 78 8 1 chr1 69927935 69930411 -172733942 + L1PA7 LINE L1 3655 6153 -1 2148 206 61 46 chr1 69930411 69930586 -172733767 - L1MCa LINE L1 -3800 2626 2455 1893 152 0 7 chr1 69930586 69930875 -172733478 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr1 69930879 69930899 -172733454 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2148 206 61 46 chr1 69930899 69931388 -172732965 - L1MCa LINE L1 -3973 2453 1957 360 176 12 71 chr1 69931390 69931475 -172732878 - AluJb SINE Alu -56 246 167 2137 127 0 3 chr1 69931491 69931790 -172732563 - AluSx SINE Alu -14 298 1 386 194 0 16 chr1 69931792 69931854 -172732499 - AluJ/FLAM SINE Alu -240 62 2 656 262 32 4 chr1 69931854 69932074 -172732279 - L1MCa LINE L1 -4683 1924 1511 216 0 0 0 chr1 69932629 69932653 -172731700 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1884 169 0 3 chr1 69933159 69933449 -172730904 - AluJo SINE Alu -22 290 2 1083 185 49 16 chr1 69934458 69934701 -172729652 - L1MB8 LINE L1 0 6178 5928 561 295 100 11 chr1 69936043 69936233 -172728120 - MER58C DNA MER1_type 0 215 9 1779 163 16 0 chr1 69937488 69937801 -172726552 - MER46B DNA MER2_type 0 236 44 245 347 125 63 chr1 69938665 69938779 -172725574 + L2 LINE L2 2150 2256 -1016 1910 150 3 3 chr1 69938779 69939066 -172725287 + AluJb SINE Alu 1 287 -25 245 347 125 63 chr1 69939066 69939837 -172724516 + L2 LINE L2 2256 3088 -184 203 290 140 21 chr1 69940091 69940184 -172724169 + L2 LINE L2 3168 3271 -1 1961 255 74 138 chr1 69940463 69940560 -172723793 + L2 LINE L2 1789 1891 -1422 1836 174 0 3 chr1 69940560 69940859 -172723494 - AluJo SINE Alu 0 312 15 2193 120 0 0 chr1 69940860 69941159 -172723194 + AluSg SINE Alu 1 299 -11 1961 255 74 138 chr1 69941159 69941818 -172722535 + L2 LINE L2 1891 2591 -722 2252 102 0 3 chr1 69941818 69942113 -172722240 - AluSx SINE Alu -18 294 1 1961 255 74 138 chr1 69942113 69942144 -172722209 + L2 LINE L2 2591 2622 -691 2399 74 0 3 chr1 69942144 69942440 -172721913 - AluY SINE Alu -16 295 1 1961 255 74 138 chr1 69942440 69942497 -172721856 + L2 LINE L2 2622 2681 -632 2107 91 0 0 chr1 69942497 69942784 -172721569 - L1PA5 LINE L1 0 6154 5868 1961 255 74 138 chr1 69942784 69942876 -172721477 + L2 LINE L2 2681 2777 -536 548 79 0 0 chr1 69942876 69942952 -172721401 - MER41A LTR ERV1 -81 473 398 1961 255 74 138 chr1 69942952 69943549 -172720804 + L2 LINE L2 2777 3313 0 6477 76 2 0 chr1 69943559 69944805 -172719548 - L1PA14 LINE L1 0 6161 4904 587 253 74 21 chr1 69996442 69996632 -172667721 - MIR SINE MIR -62 200 1 292 382 91 14 chr1 69996632 69996845 -172667508 - L3 LINE CR1 -56 1521 1292 971 268 36 0 chr1 69997214 69997438 -172666915 - MIR SINE MIR -28 234 3 477 284 152 21 chr1 69997658 69997882 -172666471 + L2 LINE L2 2768 3052 -261 3705 110 2 19 chr1 69997882 69998418 -172665935 + MER1A DNA MER1_type 1 527 0 477 284 152 21 chr1 69998418 69998528 -172665825 + L2 LINE L2 3052 3146 -167 302 246 14 0 chr1 69998536 69998605 -172665748 + MLT1L LTR MaLR 6 75 -540 488 314 0 8 chr1 69999103 69999227 -172665126 + MIR SINE MIR 30 152 -110 194 344 130 25 chr1 69999270 69999631 -172664722 - L2 LINE L2 -1121 2193 1795 6831 126 43 13 chr1 69999714 69999854 -172664499 - Tigger3b DNA MER2_type -1797 1231 1097 1202 135 8 79 chr1 69999854 70000106 -172664247 + MER46A DNA MER2_type 3 236 0 6831 126 43 13 chr1 70000106 70000471 -172663882 - Tigger3b DNA MER2_type -1931 1097 744 1605 80 5 0 chr1 70000471 70000671 -172663682 - AluSg/x SINE Alu -15 294 94 6831 126 43 13 chr1 70000671 70001359 -172662994 - Tigger3b DNA MER2_type -2284 744 1 21 0 0 0 chr1 70001961 70001982 -172662371 + AT_rich Low_complexity Low_complexity 1 21 0 1928 151 3 23 chr1 70002035 70002334 -172662019 + AluJb SINE Alu 1 293 -19 471 60 0 0 chr1 70002348 70002415 -172661938 + (CA)n Simple_repeat Simple_repeat 2 68 0 21 82 0 0 chr1 70002476 70002525 -172661828 + AT_rich Low_complexity Low_complexity 1 49 0 504 75 0 38 chr1 70002761 70002841 -172661512 - L1MC/D LINE L1 -623 5721 5645 22 0 0 0 chr1 70003483 70003505 -172660848 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 70004226 70004249 -172660104 + AT_rich Low_complexity Low_complexity 1 23 0 257 86 0 0 chr1 70004364 70004399 -172659954 - U2 snRNA snRNA -153 35 1 276 264 56 14 chr1 70004423 70004495 -172659858 - MIR SINE MIR -97 111 37 1335 70 0 0 chr1 70007842 70008014 -172656339 - L1PA5 LINE L1 -2 6152 5981 23 0 0 0 chr1 70008536 70008559 -172655794 + AT_rich Low_complexity Low_complexity 1 23 0 53 57 0 0 chr1 70008982 70009070 -172655283 + AT_rich Low_complexity Low_complexity 1 88 0 250 306 56 14 chr1 70009339 70009411 -172654942 + MER91C DNA MER1_type 36 110 -30 23 54 0 0 chr1 70009610 70009647 -172654706 + AT_rich Low_complexity Low_complexity 1 37 0 760 276 119 44 chr1 70009975 70010523 -172653830 - Tigger8 DNA MER2_type -13 653 65 232 100 67 33 chr1 70010555 70010615 -172653738 - L1M3 LINE L1 -691 5489 5428 3248 171 26 49 chr1 70010616 70011419 -172652934 - L1MB7 LINE L1 0 6184 5400 721 299 152 34 chr1 70011548 70011990 -172652363 - L3 LINE CR1 -390 1187 694 1680 124 117 11 chr1 70012035 70012308 -172652045 - AluSx SINE Alu -10 302 1 1813 167 0 26 chr1 70012319 70012625 -172651728 - AluJb SINE Alu -14 298 1 1926 103 0 81 chr1 70012630 70012950 -172651403 - AluSc SINE Alu -15 294 1 333 118 0 0 chr1 70013337 70013388 -172650965 + (TG)n Simple_repeat Simple_repeat 2 52 0 453 229 29 9 chr1 70014269 70014374 -172649979 - MIR3 SINE MIR -7 201 95 240 237 217 38 chr1 70015666 70015807 -172648546 - MIR3 SINE MIR -7 201 36 441 317 122 31 chr1 70016749 70016983 -172647370 - MIR SINE MIR -6 256 4 527 297 91 48 chr1 70017128 70017337 -172647016 - MIR SINE MIR -14 248 31 621 255 27 100 chr1 70017375 70017425 -172646928 - MIR SINE MIR -19 243 191 2402 88 3 0 chr1 70017425 70017722 -172646631 - AluSp SINE Alu -15 298 1 621 255 27 100 chr1 70017722 70017930 -172646423 - MIR SINE MIR -71 191 4 310 279 28 169 chr1 70018164 70018454 -172645899 - L2 LINE L2 -2 3270 3022 1579 172 44 27 chr1 70018464 70018760 -172645593 - AluJo SINE Alu -10 302 2 216 0 0 0 chr1 70018846 70018870 -172645483 + (CA)n Simple_repeat Simple_repeat 2 25 0 570 194 42 7 chr1 70019164 70019308 -172645045 - L1ME1 LINE L1 -5 6161 6013 518 256 167 0 chr1 70019403 70019583 -172644770 - MIR SINE MIR -6 256 47 1151 212 84 41 chr1 70019643 70019963 -172644390 + L1ME1 LINE L1 5825 6161 -5 784 218 232 0 chr1 70021413 70021624 -172642729 + MIR SINE MIR 3 262 0 355 241 48 42 chr1 70022530 70022677 -172641676 + MIR SINE MIR 37 182 -58 203 338 83 76 chr1 70022885 70023030 -172641323 - L3b LINE CR1 -29 1554 1409 567 227 37 18 chr1 70023208 70023371 -172640982 + MER117 DNA MER1_type 1 166 -31 194 246 116 14 chr1 70023608 70023677 -172640676 - L2 LINE L2 -5 3308 3233 392 314 27 10 chr1 70023848 70024018 -172640335 + MIR SINE MIR 16 185 -62 572 287 65 14 chr1 70024253 70024469 -172639884 + MIR SINE MIR 36 262 0 469 253 80 43 chr1 70024642 70024804 -172639549 - MIR SINE MIR -70 192 25 202 250 0 0 chr1 70026346 70026390 -172637963 + (TA)n Simple_repeat Simple_repeat 2 45 0 246 125 0 0 chr1 70027212 70027260 -172637093 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chr1 70029001 70029029 -172635324 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 70029529 70029564 -172634789 + AT_rich Low_complexity Low_complexity 1 35 0 292 252 27 45 chr1 70029781 70029892 -172634461 - MIR SINE MIR 0 262 154 239 167 8 16 chr1 70030106 70030170 -172634183 - L1MC2 LINE L1 -1 6332 6272 444 207 138 26 chr1 70030451 70030567 -172633786 + MIR SINE MIR 28 156 -106 424 313 93 11 chr1 70030781 70030963 -172633390 + MIR SINE MIR 47 243 -19 221 261 0 126 chr1 70031371 70031482 -172632871 + L2 LINE L2 2945 3041 -231 1203 204 22 67 chr1 70031902 70032297 -172632056 + L1MC5 LINE L1 6624 7105 -937 908 213 52 31 chr1 70032365 70032656 -172631697 + L1MC5 LINE L1 6974 7270 -691 189 107 0 0 chr1 70032664 70032692 -172631661 + (A)n Simple_repeat Simple_repeat 1 28 0 1060 281 110 24 chr1 70032859 70033491 -172630862 + L2 LINE L2 2635 3313 0 226 248 30 89 chr1 70033558 70033575 -172630778 + L2 LINE L2 3208 3224 -89 3350 112 8 95 chr1 70033575 70034217 -172630136 - L1PA14 LINE L1 0 6161 5576 226 248 30 89 chr1 70034217 70034300 -172630053 + L2 LINE L2 3224 3302 -11 209 250 0 0 chr1 70035117 70035161 -172629192 + L2 LINE L2 3266 3309 -4 1797 136 58 3 chr1 70035577 70035872 -172628481 + AluJb SINE Alu 1 311 -1 250 296 64 24 chr1 70036042 70036167 -172628186 - L2 LINE L2 -5 3308 3179 339 278 125 57 chr1 70036231 70036407 -172627946 + MER5A DNA MER1_type 2 189 0 764 185 31 49 chr1 70036538 70036700 -172627653 - MIR SINE MIR -102 160 2 240 306 81 16 chr1 70036954 70037078 -172627275 - MIR SINE MIR -71 191 60 522 245 51 119 chr1 70037109 70037307 -172627046 - MLT1L LTR MaLR -12 603 430 1567 157 132 58 chr1 70037307 70037739 -172626614 + MLT1C LTR MaLR 3 466 -1 522 245 51 119 chr1 70037739 70037834 -172626519 - MLT1L LTR MaLR -185 430 330 268 268 72 10 chr1 70037984 70038081 -172626272 + MLT1B LTR MaLR 7 109 -265 217 0 61 0 chr1 70038169 70038202 -172626151 + (TC)n Simple_repeat Simple_repeat 2 36 0 860 188 70 5 chr1 70038214 70038400 -172625953 + MLT1B LTR MaLR 193 390 0 317 229 30 99 chr1 70038414 70038545 -172625808 - MLT1L LTR MaLR -493 122 1 2047 154 3 3 chr1 70038596 70038907 -172625446 - AluSx SINE Alu -1 311 1 1698 158 73 0 chr1 70042982 70043255 -172621098 + AluJo SINE Alu 1 293 -19 206 271 17 17 chr1 70043385 70043444 -172620909 - L2 LINE L2 -5 3267 3209 232 351 27 0 chr1 70043516 70043590 -172620763 + L2 LINE L2 3215 3290 -23 2979 154 49 32 chr1 70043600 70043684 -172620669 - L1MC3 LINE L1 -8 7777 7696 1947 174 3 0 chr1 70043684 70043983 -172620370 - AluJb SINE Alu -12 300 1 2979 154 49 32 chr1 70043983 70044528 -172619825 - L1MC3 LINE L1 -89 7696 7137 198 0 0 0 chr1 70044955 70044977 -172619376 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2147 106 0 3 chr1 70044980 70045262 -172619091 - AluSx SINE Alu -31 281 1 5714 94 5 3 chr1 70045262 70046117 -172618236 - L1PA13 LINE L1 -9 6154 5299 314 323 130 12 chr1 70046235 70046396 -172617957 + MIR SINE MIR 49 228 -34 216 320 80 0 chr1 70046591 70046666 -172617687 + L2 LINE L2 3231 3311 -2 189 324 24 71 chr1 70046805 70046975 -172617378 - MIR SINE MIR -81 181 20 542 54 14 0 chr1 70047797 70047871 -172616482 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 394 236 101 34 chr1 70048299 70048447 -172615906 + MLT1L LTR MaLR 233 390 -225 429 292 79 36 chr1 70048556 70048861 -172615492 + L1ME4a LINE L1 5804 6121 0 259 213 16 16 chr1 70049112 70049173 -172615180 + L3 LINE CR1 1230 1290 -287 478 299 125 40 chr1 70049187 70049800 -172614553 - L2 LINE L2 -18 3295 2630 377 281 31 0 chr1 70049798 70049894 -172614459 + L3 LINE CR1 1296 1394 -183 * 644 273 47 47 chr1 70049896 70050152 -172614201 - MIR SINE MIR 0 262 7 2260 115 0 3 chr1 70050736 70051049 -172613304 + AluSx SINE Alu 1 312 0 2414 77 3 0 chr1 70051954 70052251 -172612102 + AluSp SINE Alu 1 298 -15 200 286 0 0 chr1 70052671 70052720 -172611633 + CT-rich Low_complexity Low_complexity 4 52 0 596 312 78 33 chr1 70053768 70054310 -172610043 + L1MC4a LINE L1 5265 5830 -1978 312 206 55 14 chr1 70054346 70054419 -172609934 + MIR SINE MIR 82 157 -105 26 64 0 0 chr1 70054419 70054466 -172609887 + AT_rich Low_complexity Low_complexity 1 47 0 1528 191 23 43 chr1 70054487 70054643 -172609710 - AluJo SINE Alu -15 297 148 2100 131 41 16 chr1 70054643 70055009 -172609344 + THE1C LTR MaLR 1 375 0 1528 191 23 43 chr1 70055009 70055155 -172609198 - AluJo SINE Alu -164 148 1 260 204 80 68 chr1 70055158 70055246 -172609107 + MIR SINE MIR 168 256 -6 291 298 268 13 chr1 70055539 70055767 -172608586 - L2 LINE L2 -2 3270 2985 787 198 55 23 chr1 70055786 70056003 -172608350 + L1ME2 LINE L1 5940 6163 -1 1248 135 65 12 chr1 70056724 70056969 -172607384 - L1MC2 LINE L1 -25 6319 6062 305 217 43 65 chr1 70056971 70057063 -172607290 - L1MC2 LINE L1 -327 6017 5928 554 301 76 32 chr1 70057392 70057641 -172606712 - MIR SINE MIR 0 262 3 239 224 149 0 chr1 70057659 70057726 -172606627 + MIR SINE MIR 47 123 -139 270 246 46 0 chr1 70058330 70058395 -172605958 + L2 LINE L2 3204 3271 -1 421 283 158 38 chr1 70058909 70059093 -172605260 - MIR SINE MIR -10 252 47 250 229 0 33 chr1 70059236 70059297 -172605056 + MIR SINE MIR 202 260 -2 1121 250 55 6 chr1 70059416 70059760 -172604593 - L2 LINE L2 -516 2798 2438 210 303 133 42 chr1 70061734 70061899 -172602454 + MIR SINE MIR 43 222 -40 1955 146 0 71 chr1 70062782 70063151 -172601202 - AluJo SINE Alu 0 345 1 1887 119 0 4 chr1 70064598 70064859 -172599494 - AluSx SINE Alu -8 304 45 188 275 18 83 chr1 70065094 70065203 -172599150 - MIR SINE MIR -82 180 79 579 235 133 12 chr1 70066127 70066293 -172598060 - MIR3 SINE MIR -6 202 17 2102 126 3 10 chr1 70066855 70067149 -172597204 + AluSq SINE Alu 1 292 -21 338 319 9 18 chr1 70067602 70067715 -172596638 - MIR SINE MIR -78 130 19 190 293 113 63 chr1 70067902 70068124 -172596229 - L2 LINE L2 -1 3312 3080 2201 133 0 9 chr1 70068530 70068845 -172595508 - AluSx SINE Alu 0 312 1 301 251 89 13 chr1 70068845 70068958 -172595395 - MLT1I LTR MaLR -236 173 68 180 0 0 0 chr1 70069084 70069104 -172595249 + (A)n Simple_repeat Simple_repeat 1 20 0 343 254 0 0 chr1 70069279 70069346 -172595007 + L2 LINE L2 3206 3272 0 422 130 80 10 chr1 70069599 70069699 -172594654 - AluSg SINE Alu -22 290 184 1345 113 11 0 chr1 70069873 70070050 -172594303 - AluSg SINE Alu -131 179 1 1161 229 54 9 chr1 70070060 70070396 -172593957 - L1M4 LINE L1 -1127 5019 4669 2283 129 0 0 chr1 70070425 70070736 -172593617 - AluSx SINE Alu -1 311 1 24 67 0 0 chr1 70070741 70070786 -172593567 + AT_rich Low_complexity Low_complexity 1 45 0 703 210 117 65 chr1 70071080 70071294 -172593059 + MIR SINE MIR 30 254 -8 239 299 11 35 chr1 70071600 70071687 -172592666 - L2 LINE L2 -183 3089 3005 1229 204 74 52 chr1 70072215 70072552 -172591801 + Charlie4a DNA MER1_type 3 354 -1607 2753 29 0 0 chr1 70072552 70072859 -172591494 + AluY SINE Alu 1 307 -4 1229 204 74 52 chr1 70072859 70072982 -172591371 + Charlie4a DNA MER1_type 354 473 -35 510 288 75 6 chr1 70073333 70073493 -172590860 - MIR SINE MIR -71 191 21 993 184 0 0 chr1 70075766 70075913 -172588440 + FRAM SINE Alu 1 146 -30 377 58 0 0 chr1 70076284 70076336 -172588017 + MADE1 DNA Mariner 29 80 0 381 284 193 6 chr1 70077271 70077447 -172586906 - MIR SINE MIR -42 220 12 441 252 118 0 chr1 70078009 70078136 -172586217 - MIR3 SINE MIR -18 190 49 636 285 135 34 chr1 70078594 70079049 -172585304 - MLT1H LTR MaLR -4 545 3 31 0 0 0 chr1 70080222 70080253 -172584100 + AT_rich Low_complexity Low_complexity 1 31 0 650 258 37 6 chr1 70084681 70084844 -172579509 + MIR SINE MIR 31 198 -64 2123 218 90 19 chr1 70084872 70085436 -172578917 + L2 LINE L2 1906 2509 -805 910 212 25 37 chr1 70085460 70085701 -172578652 + L2 LINE L2 3075 3312 -1 225 300 33 0 chr1 70085689 70085749 -172578604 + MIR SINE MIR 189 250 -12 * 185 318 48 0 chr1 70085907 70085970 -172578383 + L2 LINE L2 3206 3271 -1 1461 144 65 19 chr1 70086124 70086387 -172577966 + AluJb SINE Alu 34 308 -4 310 290 40 153 chr1 70086508 70086644 -172577709 - L2 LINE L2 -8 3264 3114 937 218 0 0 chr1 70086644 70086818 -172577535 - FAM SINE Alu 0 175 2 310 290 40 153 chr1 70086818 70087137 -172577216 - L2 LINE L2 -158 3114 2861 180 0 0 0 chr1 70087137 70087157 -172577196 + (TG)n Simple_repeat Simple_repeat 2 21 0 310 290 40 153 chr1 70087157 70087172 -172577181 - L2 LINE L2 -411 2861 2846 700 259 106 85 chr1 70087551 70088027 -172576326 + HAL1 LINE L1 422 886 -1621 2497 74 3 0 chr1 70088027 70088337 -172576016 + AluY SINE Alu 1 311 0 700 259 106 85 chr1 70088337 70088847 -172575506 + HAL1 LINE L1 886 1429 -1078 1985 147 3 0 chr1 70088858 70089150 -172575203 + AluJo SINE Alu 1 293 -19 488 293 128 11 chr1 70089160 70089348 -172575005 - MIR SINE MIR 0 262 53 1215 275 124 34 chr1 70089348 70090167 -172574186 + HAL1 LINE L1 1438 2330 -177 1086 195 0 19 chr1 70090167 70090372 -172573981 + MER6A DNA MER2_type 1 201 -404 2408 91 13 0 chr1 70090545 70090854 -172573499 + AluSp SINE Alu 1 313 0 725 281 107 45 chr1 70091074 70091494 -172572859 - MLT1J1 LTR MaLR 0 446 1 335 333 39 0 chr1 70091494 70091596 -172572757 - L2 LINE L2 -27 3245 3140 248 250 90 60 chr1 70091741 70091841 -172572512 - L2 LINE L2 -9 3304 3202 407 284 14 43 chr1 70091925 70092066 -172572287 + MIR SINE MIR 16 152 -110 344 324 0 10 chr1 70092072 70092174 -172572179 + MIR SINE MIR 24 124 -138 575 324 14 5 chr1 70092238 70092445 -172571908 + MIR SINE MIR 46 254 -8 576 279 11 22 chr1 70095435 70095618 -172568735 + MIR SINE MIR 80 260 -2 297 237 63 109 chr1 70095684 70095886 -172568467 - MIR SINE MIR -24 238 37 760 298 102 39 chr1 70097330 70097793 -172566560 - MLT1J LTR MaLR -3 508 17 262 377 65 7 chr1 70097921 70098059 -172566294 + L2 LINE L2 3126 3271 -1 2382 110 0 0 chr1 70098955 70099265 -172565088 - AluSx SINE Alu -2 310 1 22 0 0 0 chr1 70099493 70099515 -172564838 + AT_rich Low_complexity Low_complexity 1 22 0 264 210 48 0 chr1 70099625 70099687 -172564666 + CT-rich Low_complexity Low_complexity 4 68 0 202 326 11 45 chr1 70099708 70099797 -172564556 - L2 LINE L2 -1 3271 3186 382 275 110 40 chr1 70100685 70100885 -172563468 - MIR SINE MIR -28 234 21 533 279 42 50 chr1 70100971 70101308 -172563045 - L1MC4 LINE L1 0 8042 7709 222 232 0 36 chr1 70101479 70101535 -172562818 + CT-rich Low_complexity Low_complexity 3 56 0 2193 106 0 0 chr1 70101648 70101930 -172562423 + AluSx SINE Alu 1 282 -30 354 278 26 52 chr1 70102183 70102253 -172562100 + MIR SINE MIR 23 90 -172 394 261 92 0 chr1 70102253 70102372 -172561981 + MER94 DNA DNA 3 132 -2 354 278 26 52 chr1 70102372 70102416 -172561937 + MIR SINE MIR 90 134 -128 1967 124 0 0 chr1 70102842 70103107 -172561246 + AluSq SINE Alu 1 265 -48 237 307 61 0 chr1 70103499 70103613 -172560740 + L2 LINE L2 3193 3313 0 217 400 29 7 chr1 70104866 70105006 -172559347 - L2 LINE L2 -184 3088 2946 27 49 0 0 chr1 70105491 70105532 -172558821 + AT_rich Low_complexity Low_complexity 1 41 0 234 0 0 0 chr1 70105568 70105594 -172558759 + (TG)n Simple_repeat Simple_repeat 1 26 0 560 224 29 0 chr1 70106204 70106347 -172558006 + MIR SINE MIR 42 188 -61 345 290 71 27 chr1 70107174 70107357 -172556996 + Charlie8 DNA MER1_type 81 271 -2146 324 277 25 17 chr1 70108176 70108295 -172556058 + MER5A DNA MER1_type 64 183 -6 1203 190 98 46 chr1 70108732 70108918 -172555435 - MER2 DNA MER2_type 0 344 132 2428 81 3 0 chr1 70108918 70109215 -172555138 - AluSp SINE Alu -15 298 1 1203 190 98 46 chr1 70109215 70109355 -172554998 - MER2 DNA MER2_type -212 132 1 270 283 0 0 chr1 70110697 70110757 -172553596 + L2 LINE L2 3202 3261 -11 5371 111 6 11 chr1 70110757 70111557 -172552796 + L1PA16 LINE L1 5367 6162 -4 464 192 17 75 chr1 70111989 70112030 -172552323 - MER94 DNA DNA -20 114 72 2108 124 0 3 chr1 70112030 70112356 -172551997 - AluSg SINE Alu 0 325 1 464 192 17 75 chr1 70112356 70112433 -172551920 - MER94 DNA DNA -62 72 2 1694 173 50 12 chr1 70112461 70112784 -172551569 + MER2 DNA MER2_type 1 335 -10 222 291 0 0 chr1 70112821 70112876 -172551477 - L2 LINE L2 -543 2771 2717 2137 126 0 0 chr1 70113527 70113821 -172550532 + AluSc SINE Alu 1 294 -15 1768 124 0 0 chr1 70114032 70114266 -172550087 + AluSx SINE Alu 55 288 -24 741 259 55 9 chr1 70114304 70114524 -172549829 - MIR SINE MIR -13 249 20 258 261 242 7 chr1 70114630 70114783 -172549570 + MIR SINE MIR 21 209 -53 1746 122 0 91 chr1 70114832 70115151 -172549202 - AluSx SINE Alu -21 291 2 1739 139 3 54 chr1 70115795 70116124 -172548229 - AluJb SINE Alu 0 316 3 223 287 164 33 chr1 70116226 70116348 -172548005 - MIR SINE MIR -122 140 3 382 261 191 25 chr1 70116522 70116721 -172547632 + MIR SINE MIR 31 262 0 195 42 0 0 chr1 70117022 70117046 -172547307 + (A)n Simple_repeat Simple_repeat 1 24 0 36 0 0 0 chr1 70118450 70118486 -172545867 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 70119673 70119694 -172544659 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr1 70119977 70120011 -172544342 + (T)n Simple_repeat Simple_repeat 1 34 0 246 333 18 27 chr1 70123344 70123455 -172540898 - MIR SINE MIR -63 145 36 745 265 25 10 chr1 70123582 70123786 -172540567 - MER58C DNA MER1_type -3 212 6 318 206 27 14 chr1 70124056 70124129 -172540224 + MER116 DNA Mariner 7 80 0 587 286 187 11 chr1 70124897 70125271 -172539082 - L2 LINE L2 -67 3246 2807 243 194 14 42 chr1 70125303 70125375 -172538978 + L2 LINE L2 3224 3293 -20 476 302 106 8 chr1 70126139 70126209 -172538144 + MIR SINE MIR 2 64 -198 1846 164 3 16 chr1 70126209 70126514 -172537839 - AluJb SINE Alu -11 301 1 476 302 106 8 chr1 70126514 70126678 -172537675 + MIR SINE MIR 64 259 -3 22 35 0 0 chr1 70126715 70126744 -172537609 + AT_rich Low_complexity Low_complexity 1 29 0 1782 130 72 7 chr1 70127223 70127500 -172536853 + AluSx SINE Alu 1 295 -17 204 252 87 70 chr1 70127575 70127690 -172536663 - MIR3 SINE MIR -3 205 89 228 309 204 7 chr1 70127734 70127886 -172536467 - MIR SINE MIR -14 248 67 1106 183 107 81 chr1 70129204 70129587 -172534766 + MLT1C LTR MaLR 75 467 0 2137 93 31 3 chr1 70130283 70130574 -172533779 + AluSc SINE Alu 2 300 -9 1928 157 3 6 chr1 70130576 70130889 -172533464 + AluJo SINE Alu 1 312 0 214 274 217 9 chr1 70131629 70131735 -172532618 + L2 LINE L2 3144 3271 -1 2126 129 38 57 chr1 70131759 70132130 -172532223 - THE1B LTR MaLR 0 364 1 435 228 7 21 chr1 70132248 70132382 -172531971 - MIR SINE MIR -63 145 20 2234 113 0 6 chr1 70132693 70133004 -172531349 - AluSx SINE Alu -3 309 1 446 299 66 33 chr1 70133037 70133248 -172531105 + MIR SINE MIR 11 228 -34 370 202 29 10 chr1 70133312 70133416 -172530937 + (TAA)n Simple_repeat Simple_repeat 1 106 0 273 324 19 9 chr1 70134339 70134447 -172529906 - L3 LINE CR1 -305 1272 1164 244 286 56 48 chr1 70134854 70134980 -172529373 + LTR67 LTR ERVL 410 536 -21 287 221 0 44 chr1 70134986 70135054 -172529299 + C-rich Low_complexity Low_complexity 1 65 0 2019 138 42 0 chr1 70136368 70136702 -172527651 + L1MB3 LINE L1 5836 6183 0 1035 196 36 5 chr1 70138126 70138346 -172526007 + MIR SINE MIR 22 248 -14 245 319 18 9 chr1 70138928 70139041 -172525312 - MIR SINE MIR -19 243 130 2154 132 0 10 chr1 70139200 70139503 -172524850 + AluSx SINE Alu 3 302 -10 305 221 117 0 chr1 70139604 70139681 -172524672 + L2 LINE L2 3228 3313 0 218 56 28 0 chr1 70139901 70139937 -172524416 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 643 259 51 42 chr1 70146125 70146361 -172517992 - MIR SINE MIR -23 239 2 640 256 0 0 chr1 70146677 70146814 -172517539 + MIR SINE MIR 62 198 -64 249 311 26 58 chr1 70147316 70147506 -172516847 - L2 LINE L2 -213 3059 2876 394 248 15 78 chr1 70147999 70148245 -172516108 - MIR SINE MIR 0 262 40 437 262 35 21 chr1 70148869 70149014 -172515339 - MIR SINE MIR -47 215 69 418 318 109 28 chr1 70149165 70149609 -172514744 + L2 LINE L2 2622 3087 -185 326 268 109 61 chr1 70149668 70150106 -172514247 - MLT1L LTR MaLR -2 613 150 1549 166 88 32 chr1 70150185 70150469 -172513884 + AluJb SINE Alu 1 300 -12 181 330 77 11 chr1 70150540 70150631 -172513722 + L2 LINE L2 3133 3229 -43 25 0 0 0 chr1 70150989 70151014 -172513339 + AT_rich Low_complexity Low_complexity 1 25 0 404 62 16 0 chr1 70151915 70151979 -172512374 + (TG)n Simple_repeat Simple_repeat 1 65 0 590 330 15 0 chr1 70155494 70155691 -172508662 + MIR SINE MIR 33 232 -30 * 660 279 33 33 chr1 70155646 70155890 -172508463 - MIR SINE MIR -3 259 16 1142 119 6 6 chr1 70156227 70156395 -172507958 + AluSq SINE Alu 1 168 -145 444 262 0 0 chr1 70156415 70156614 -172507739 + T-rich Low_complexity Low_complexity 1 199 0 329 243 162 25 chr1 70156664 70156893 -172507460 - L1 LINE L1 -2841 3305 3075 1249 147 0 5 chr1 70157037 70157228 -172507125 - AluSx SINE Alu -122 190 1 265 385 0 0 chr1 70157228 70157332 -172507021 + MER5B DNA MER1_type 39 142 -36 2059 230 78 6 chr1 70157338 70157865 -172506488 - L1ME3A LINE L1 -18 6152 5588 189 0 0 0 chr1 70158648 70158669 -172505684 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2169 111 0 0 chr1 70158669 70158949 -172505404 - AluSx SINE Alu -32 280 1 207 352 0 0 chr1 70159299 70159353 -172505000 + MER91B DNA MER1_type 1 54 -136 191 264 42 42 chr1 70159400 70159472 -172504881 + MIR SINE MIR 157 228 -34 2003 130 29 3 chr1 70159579 70159886 -172504467 - MER44D DNA MER2_type -1 608 24 887 163 11 45 chr1 70160302 70160480 -172503873 + MER30 DNA MER1_type 58 229 -1 272 283 43 11 chr1 70161356 70161448 -172502905 + MIR SINE MIR 124 218 -44 1556 207 3 25 chr1 70161486 70161805 -172502548 - MER46C DNA MER2_type -17 321 10 2126 112 3 13 chr1 70161880 70162185 -172502168 - AluSx SINE Alu -10 302 1 456 344 104 5 chr1 70162326 70162538 -172501815 + L3 LINE CR1 1344 1576 -1 341 231 17 98 chr1 70162721 70162894 -172501459 + MER103 DNA DNA 1 159 -7 217 300 73 45 chr1 70162985 70163095 -172501258 - L2 LINE L2 -13 3259 3147 2256 93 0 0 chr1 70163166 70163455 -172500898 - AluSg SINE Alu -21 289 1 25 0 0 0 chr1 70163899 70163924 -172500429 + AT_rich Low_complexity Low_complexity 1 25 0 1905 131 3 24 chr1 70164470 70164768 -172499585 + AluJo SINE Alu 3 294 -18 301 221 133 51 chr1 70164770 70164965 -172499388 - L1ME4a LINE L1 -19 6102 5892 860 239 96 17 chr1 70164992 70165293 -172499060 - L1ME4a LINE L1 -264 5857 5533 413 262 33 49 chr1 70165771 70165893 -172498460 - L2 LINE L2 -1 3271 3152 270 298 12 12 chr1 70165928 70166012 -172498341 + L2 LINE L2 3145 3228 -44 628 137 29 34 chr1 70166949 70167124 -172497229 + CT-rich Low_complexity Low_complexity 3 176 0 21 0 0 0 chr1 70167356 70167377 -172496976 + AT_rich Low_complexity Low_complexity 1 21 0 1761 40 0 0 chr1 70168160 70168362 -172495991 + L1PA4 LINE L1 5949 6150 -5 388 271 102 63 chr1 70168373 70168657 -172495696 + HAL1 LINE L1 1375 1669 -838 2018 135 0 0 chr1 70168831 70169105 -172495248 - AluSx SINE Alu -38 274 1 21 36 0 0 chr1 70169326 70169354 -172494999 + AT_rich Low_complexity Low_complexity 1 28 0 1810 133 33 20 chr1 70169360 70169660 -172494693 + AluJo SINE Alu 3 306 -6 256 256 103 43 chr1 70169823 70169940 -172494413 + L2 LINE L2 3190 3313 0 555 233 41 2 chr1 70170362 70170515 -172493838 - MIR SINE MIR -62 146 39 234 0 0 0 chr1 70170549 70170575 -172493778 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2183 153 60 35 chr1 70170672 70171189 -172493164 + MLT2A2 LTR ERVL 1 554 0 620 251 37 18 chr1 70171248 70171411 -172492942 - MIR SINE MIR -85 177 12 380 344 44 46 chr1 70171447 70171860 -172492493 + L2 LINE L2 2563 2974 -340 273 278 53 86 chr1 70172466 70172617 -172491736 - MIR SINE MIR -58 150 29 1445 207 114 18 chr1 70172630 70172963 -172491390 + MLT1A1 LTR MaLR 1 365 0 413 241 48 41 chr1 70172975 70173120 -172491233 - MER91A DNA MER1_type -1 195 50 24 32 0 0 chr1 70173669 70173700 -172490653 + AT_rich Low_complexity Low_complexity 1 31 0 339 373 46 13 chr1 70174107 70174260 -172490093 + L2 LINE L2 3113 3270 -2 1248 152 5 5 chr1 70174359 70174556 -172489797 + MLT1C LTR MaLR 1 197 -270 630 28 0 0 chr1 70174557 70174628 -172489725 - MER4A LTR ERV1 0 664 594 2442 119 59 9 chr1 70174728 70175231 -172489122 - MER4B LTR ERV1 -11 599 1 1140 168 10 5 chr1 70175231 70175426 -172488927 + MLT1C LTR MaLR 195 390 -77 550 229 173 40 chr1 70175641 70175890 -172488463 + LTR16A LTR ERVL 91 372 -78 3999 120 18 24 chr1 70176038 70176177 -172488176 - MER61E LTR ERV1 0 569 431 1929 75 0 0 chr1 70176177 70176416 -172487937 + AluY SINE Alu 65 303 -8 3999 120 18 24 chr1 70176416 70176849 -172487504 - MER61E LTR ERV1 -138 431 1 450 316 8 8 chr1 70176878 70177011 -172487342 + MIR SINE MIR 10 142 -120 735 207 141 5 chr1 70177088 70177286 -172487067 + L1MD2 LINE L1 6030 6254 -105 326 250 12 24 chr1 70177286 70177370 -172486983 + MIR SINE MIR 139 221 -41 345 258 76 38 chr1 70177381 70177513 -172486840 + L1ME4a LINE L1 5964 6100 -21 22 35 0 0 chr1 70177542 70177571 -172486782 + AT_rich Low_complexity Low_complexity 1 29 0 676 326 80 30 chr1 70177720 70178119 -172486234 + MLT1K LTR MaLR 169 587 -1 1653 160 0 122 chr1 70178590 70178933 -172485420 - AluJo SINE Alu 0 302 2 439 248 10 10 chr1 70179083 70179184 -172485169 - MIR SINE MIR -76 132 32 575 326 71 8 chr1 70179935 70180174 -172484179 - MIR SINE MIR -8 254 1 22 0 0 0 chr1 70180268 70180290 -172484063 + AT_rich Low_complexity Low_complexity 1 22 0 8076 28 0 11 chr1 70180290 70181225 -172483128 - L1PA4 LINE L1 -3 6152 5220 1013 167 167 51 chr1 70181349 70181594 -172482759 + L1MD2 LINE L1 6030 6313 -46 2390 48 0 24 chr1 70181594 70181914 -172482439 + AluY SINE Alu 1 313 0 1013 167 167 51 chr1 70181914 70181943 -172482410 + L1MD2 LINE L1 6313 6337 -22 1266 209 73 33 chr1 70181993 70182064 -172482289 - MER2 DNA MER2_type -1 343 276 1686 155 9 62 chr1 70182064 70182386 -172481967 + AluJo SINE Alu 1 305 -7 1266 209 73 33 chr1 70182386 70182644 -172481709 - MER2 DNA MER2_type -68 276 1 402 104 52 39 chr1 70183034 70183111 -172481242 + L1ME LINE L1 5552 5629 -492 3188 171 76 33 chr1 70183382 70184145 -172480208 + L1MB7 LINE L1 4770 5665 -501 2237 121 0 0 chr1 70184145 70184451 -172479902 + AluSq SINE Alu 3 308 -5 3188 171 76 33 chr1 70184451 70184976 -172479377 + L1MB7 LINE L1 5665 6166 0 2843 108 44 5 chr1 70186207 70186635 -172477718 - LTR56 LTR ERV1 0 445 1 4029 112 18 0 chr1 70186862 70187406 -172476947 + MER41A LTR ERV1 1 554 0 379 267 160 29 chr1 70187577 70187783 -172476570 + MIR SINE MIR 18 250 -12 2585 23 3 10 chr1 70188166 70188466 -172475887 + AluY SINE Alu 1 298 -13 2674 122 5 8 chr1 70188663 70189039 -172475314 + THE1C LTR MaLR 1 375 0 231 119 0 0 chr1 70189200 70189242 -172475111 - LTR66 LTR ERVL -171 439 398 248 177 0 48 chr1 70189247 70189309 -172475044 - L1MCa LINE L1 -4362 2064 2006 233 222 0 16 chr1 70189309 70189372 -172474981 + L1MCa LINE L1 2006 2067 -4359 * 240 290 0 32 chr1 70189318 70189411 -172474942 - L1MC4 LINE L1 -1339 6703 6614 * 495 253 77 6 chr1 70189379 70189549 -172474804 + L1ME4a LINE L1 5935 6116 -5 379 230 115 14 chr1 70189941 70190080 -172474273 - MIR SINE MIR -4 258 106 5896 156 42 25 chr1 70190962 70191794 -172472559 + L1MC1 LINE L1 5192 6046 -287 2269 120 49 12 chr1 70191794 70192118 -172472235 - MER1B DNA MER1_type -1 336 1 5896 156 42 25 chr1 70192118 70192412 -172471941 + L1MC1 LINE L1 6046 6333 0 299 296 53 117 chr1 70192564 70193034 -172471319 - L2 LINE L2 -22 3250 2811 186 337 41 31 chr1 70193081 70193179 -172471174 + L2 LINE L2 3172 3270 -2 218 290 97 48 chr1 70194104 70194228 -172470125 + L2 LINE L2 3143 3272 0 1160 178 72 0 chr1 70194428 70194636 -172469717 + MER58A DNA MER1_type 1 223 -1 225 338 44 29 chr1 70194710 70194846 -172469507 - MIR3 SINE MIR -15 193 56 248 310 101 0 chr1 70195611 70195740 -172468613 - MIR3 SINE MIR -28 180 39 207 263 53 0 chr1 70195758 70195815 -172468538 + L2 LINE L2 3213 3272 0 447 268 16 16 chr1 70195829 70195942 -172468411 - L2 LINE L2 -8 3264 3149 312 27 0 0 chr1 70195942 70195979 -172468374 + (TG)n Simple_repeat Simple_repeat 1 37 0 1161 220 12 4 chr1 70196034 70196279 -172468074 - MIR SINE MIR -1 261 15 207 250 0 0 chr1 70196306 70196346 -172468007 + (TGAG)n Simple_repeat Simple_repeat 1 40 0 711 298 34 0 chr1 70196558 70196763 -172467590 - MIR SINE MIR -19 243 32 655 202 48 0 chr1 70196800 70196924 -172467429 + MER5B DNA MER1_type 1 130 -48 1062 117 82 0 chr1 70196936 70197107 -172467246 - L1MA8 LINE L1 -4 6287 6103 369 81 65 24 chr1 70197119 70197243 -172467110 + (TTATA)n Simple_repeat Simple_repeat 2 130 0 462 172 0 40 chr1 70197246 70197345 -172467008 - L1MA8 LINE L1 -177 6114 6020 1869 114 8 0 chr1 70197358 70197620 -172466733 - AluSc SINE Alu -10 299 36 181 250 58 0 chr1 70197978 70198030 -172466323 - MIR SINE MIR -32 230 176 706 279 72 30 chr1 70199294 70199531 -172464822 + MIR SINE MIR 15 261 -1 373 286 121 60 chr1 70200671 70200853 -172463500 - MIR SINE MIR -27 235 43 7255 107 17 4 chr1 70200859 70202002 -172462351 + L1MA2 LINE L1 5149 6304 0 2896 16 0 0 chr1 70202089 70202405 -172461948 - AluYb8 SINE Alu -2 316 1 26 50 0 0 chr1 70202537 70202577 -172461776 + AT_rich Low_complexity Low_complexity 1 40 0 487 280 29 34 chr1 70202917 70203092 -172461261 - MIR SINE MIR -69 193 20 242 191 21 0 chr1 70203327 70203374 -172460979 - L2 LINE L2 -2 3311 3264 283 247 74 12 chr1 70203394 70203475 -172460878 + L2 LINE L2 3186 3271 -1 336 206 128 29 chr1 70203547 70203647 -172460706 - L2 LINE L2 0 3313 3204 463 289 92 17 chr1 70203647 70203820 -172460533 + MIR SINE MIR 1 186 -76 2696 178 27 25 chr1 70204346 70204857 -172459496 - MLT2B1 LTR ERVL -8 512 1 448 321 10 88 chr1 70204943 70205275 -172459078 - L2 LINE L2 -189 3083 2776 341 213 0 0 chr1 70205296 70205357 -172458996 + L2 LINE L2 3245 3305 -8 2233 99 10 0 chr1 70205459 70205752 -172458601 + AluSq SINE Alu 1 296 -17 405 312 32 19 chr1 70205813 70205970 -172458383 + MIR SINE MIR 24 182 -80 345 329 53 14 chr1 70206463 70206626 -172457727 + MIR3 SINE MIR 11 182 -26 979 149 60 0 chr1 70206832 70207000 -172457353 + MER20 DNA MER1_type 42 219 0 261 229 0 0 chr1 70207000 70207048 -172457305 + MIR SINE MIR 118 165 -97 4429 148 39 48 chr1 70208030 70208296 -172456057 + L1MB3 LINE L1 5346 5613 -570 2086 138 3 0 chr1 70208296 70208601 -172455752 + AluSx SINE Alu 1 306 -6 4429 148 39 48 chr1 70208601 70209180 -172455173 + L1MB3 LINE L1 5613 6183 0 218 236 0 14 chr1 70209476 70209548 -172454805 + CT-rich Low_complexity Low_complexity 2 72 0 368 319 86 35 chr1 70209646 70209959 -172454394 + L1MC4a LINE L1 4903 5231 -915 946 248 208 28 chr1 70209981 70210149 -172454204 + L1MC4a LINE L1 5254 5390 -2418 1839 100 0 20 chr1 70210149 70210422 -172453931 + AluSg SINE Alu 40 307 0 946 248 208 28 chr1 70210422 70210761 -172453592 + L1MC4a LINE L1 5390 5854 -1954 377 220 156 9 chr1 70211136 70211245 -172453108 + MIR3 SINE MIR 81 205 -3 741 274 73 9 chr1 70211280 70211499 -172452854 + MIR SINE MIR 11 243 -19 251 186 0 17 chr1 70211513 70211572 -172452781 + CT-rich Low_complexity Low_complexity 6 63 0 678 193 8 0 chr1 70212030 70212149 -172452204 - L1PB4 LINE L1 -7 6149 6030 199 348 25 59 chr1 70212216 70212334 -172452019 - MER5A DNA MER1_type -29 160 47 21 0 0 0 chr1 70213805 70213826 -172450527 + AT_rich Low_complexity Low_complexity 1 21 0 1972 159 7 0 chr1 70214000 70214302 -172450051 - AluJb SINE Alu -8 304 1 516 300 27 0 chr1 70214482 70214632 -172449721 - MIR SINE MIR -21 241 88 571 266 159 14 chr1 70215044 70215251 -172449102 + MIR SINE MIR 1 237 -25 402 284 86 37 chr1 70215446 70215608 -172448745 + MIR3 SINE MIR 28 197 -11 314 221 0 29 chr1 70218395 70218463 -172445890 - MER116 DNA Mariner -10 70 5 324 271 110 25 chr1 70218735 70218853 -172445500 + L2 LINE L2 3145 3272 0 361 267 117 8 chr1 70219277 70219397 -172444956 - MIR SINE MIR -123 139 7 408 278 68 38 chr1 70219630 70219763 -172444590 - L2 LINE L2 0 3313 3177 272 315 112 21 chr1 70220023 70220166 -172444187 - L2 LINE L2 0 3272 3117 186 43 0 0 chr1 70220441 70220464 -172443889 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 1391 203 35 108 chr1 70220487 70220886 -172443467 + MLT1A2 LTR MaLR 1 370 -4 1407 259 69 20 chr1 70221138 70221528 -172442825 + MLT1I LTR MaLR 1 409 0 656 299 33 5 chr1 70221897 70222081 -172442272 + MIR SINE MIR 20 208 -54 207 139 0 0 chr1 70222094 70222130 -172442223 + (TTA)n Simple_repeat Simple_repeat 2 37 0 499 247 62 37 chr1 70222997 70223159 -172441194 - L2 LINE L2 0 3313 3148 1304 262 134 0 chr1 70223804 70224163 -172440190 - LTR16C LTR ERVL 0 491 85 1929 102 0 61 chr1 70224417 70224744 -172439609 - AluSx SINE Alu 0 315 7 653 165 8 39 chr1 70225368 70225495 -172438858 + MIR SINE MIR 112 234 -28 365 252 69 46 chr1 70225533 70225547 -172438806 - L2 LINE L2 0 3313 3301 1723 160 20 30 chr1 70225547 70225847 -172438506 - AluJo SINE Alu -15 297 1 365 252 69 46 chr1 70225847 70225963 -172438390 - L2 LINE L2 -12 3301 3180 477 257 93 49 chr1 70226745 70226928 -172437425 + MIR SINE MIR 23 213 -49 236 241 35 0 chr1 70227731 70227789 -172436564 + GA-rich Low_complexity Low_complexity 2 61 0 245 169 307 52 chr1 70227855 70227973 -172436380 + MIR SINE MIR 7 153 -55 231 358 30 0 chr1 70228129 70228196 -172436157 + L2 LINE L2 3152 3220 -52 570 330 67 9 chr1 70228669 70228893 -172435460 - MIR SINE MIR -6 256 20 29 47 0 0 chr1 70229205 70229248 -172435105 + AT_rich Low_complexity Low_complexity 1 43 0 311 376 51 13 chr1 70229652 70229809 -172434544 - L2 LINE L2 0 3272 3110 552 238 73 12 chr1 70229835 70229999 -172434354 - MIR SINE MIR 0 262 89 207 279 90 49 chr1 70230082 70230204 -172434149 - L2 LINE L2 -207 3065 2939 186 256 0 0 chr1 70230711 70230750 -172433603 + L2 LINE L2 3251 3289 -24 297 0 0 0 chr1 70230754 70230787 -172433566 + (CA)n Simple_repeat Simple_repeat 2 34 0 182 354 42 10 chr1 70230986 70231082 -172433271 - MIR3 SINE MIR -38 170 72 23 0 0 0 chr1 70233505 70233528 -172430825 + AT_rich Low_complexity Low_complexity 1 23 0 583 257 72 27 chr1 70233818 70233957 -172430396 - MIR SINE MIR -26 236 82 1512 194 13 36 chr1 70233957 70234266 -172430087 - AluJo SINE Alu -10 302 1 583 257 72 27 chr1 70234266 70234348 -172430005 - MIR SINE MIR -180 82 5 773 169 8 0 chr1 70234750 70234874 -172429479 - Tigger1 DNA MER2_type -3 2415 2291 * 9371 104 14 1 chr1 70234869 70236189 -172428164 - Tigger1 DNA MER2_type -521 1897 561 11673 119 17 3 chr1 70236291 70237998 -172426355 - Tigger1 DNA MER2_type -688 1730 1 25 0 0 0 chr1 70238485 70238510 -172425843 + AT_rich Low_complexity Low_complexity 1 25 0 369 311 114 0 chr1 70238587 70238719 -172425634 - MIR3 SINE MIR -46 162 16 251 239 0 28 chr1 70239316 70239387 -172424966 + L2 LINE L2 3245 3313 0 1973 158 7 9 chr1 70239807 70240166 -172424187 + Tigger3(Golem) DNA MER2_type 1 3029 0 838 150 7 29 chr1 70240231 70240371 -172423982 - FLAM_C SINE Alu -5 138 2 461 230 170 44 chr1 70240592 70240727 -172423626 + MER97a DNA MER1_type? 1 152 -742 2195 164 33 77 chr1 70240739 70241222 -172423131 + MLT1C LTR MaLR 6 467 0 312 177 32 16 chr1 70241611 70241673 -172422680 + MER5A DNA MER1_type 10 72 -117 366 214 77 51 chr1 70241705 70241822 -172422531 + MER5A DNA MER1_type 7 126 -63 233 255 255 0 chr1 70242016 70242122 -172422231 - MIR SINE MIR -32 230 98 1882 145 4 0 chr1 70242122 70242398 -172421955 + AluJb SINE Alu 2 278 -34 890 58 8 0 chr1 70242398 70242519 -172421834 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 1393 32 0 0 chr1 70242522 70242679 -172421674 + L1PA2 LINE L1 5999 6155 0 256 147 0 29 chr1 70242681 70242749 -172421604 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 268 368 66 66 chr1 70242806 70243186 -172421167 + L2 LINE L2 2884 3263 -9 557 273 115 6 chr1 70243194 70243377 -172420976 + MIR SINE MIR 49 251 -11 331 315 132 36 chr1 70243430 70243649 -172420704 - MIR SINE MIR 0 262 23 360 0 0 0 chr1 70244603 70244643 -172419710 + (CA)n Simple_repeat Simple_repeat 2 41 0 323 280 33 25 chr1 70245431 70245619 -172418734 + MIR SINE MIR 18 262 0 234 0 0 0 chr1 70245757 70245783 -172418570 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 390 304 107 28 chr1 70245852 70246083 -172418270 - MIR SINE MIR -10 252 3 431 321 101 22 chr1 70246786 70247063 -172417290 - L2 LINE L2 -72 3241 2943 * 903 313 61 12 chr1 70247040 70247491 -172416862 + L2 LINE L2 2756 3228 -85 671 38 0 0 chr1 70247784 70247863 -172416490 - L1PA5 LINE L1 -5 6149 6071 373 254 33 25 chr1 70249050 70249172 -172415181 - LTR67 LTR ERVL -7 550 428 664 272 53 34 chr1 70249487 70249693 -172414660 - MIR SINE MIR -6 256 47 222 309 32 43 chr1 70249909 70250003 -172414350 + MIR3 SINE MIR 4 96 -112 180 259 37 0 chr1 70250086 70250140 -172414213 + MIR SINE MIR 96 151 -111 538 263 129 21 chr1 70250444 70250630 -172413723 + MLT1J2 LTR MaLR 1 206 -244 325 248 40 31 chr1 70250638 70250810 -172413543 + MLT1J2 LTR MaLR 249 422 -24 1239 147 28 37 chr1 70250880 70251098 -172413255 - MER20 DNA MER1_type -2 217 2 24 32 0 0 chr1 70251111 70251142 -172413211 + AT_rich Low_complexity Low_complexity 1 31 0 182 364 7 93 chr1 70253884 70254035 -172410318 - MIR3 SINE MIR -60 148 11 755 266 30 23 chr1 70254320 70254553 -172409800 + MIR SINE MIR 15 246 -16 846 76 25 0 chr1 70254599 70254718 -172409635 + L1PA10 LINE L1 6028 6149 -19 189 0 0 0 chr1 70254718 70254739 -172409614 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 369 184 65 89 chr1 70255614 70255685 -172408668 + MER103 DNA DNA 2 73 -93 1963 132 14 3 chr1 70255685 70255980 -172408373 - AluSx SINE Alu -14 298 1 369 184 65 89 chr1 70255980 70256076 -172408277 + MER103 DNA DNA 73 165 -1 206 296 37 49 chr1 70256213 70256294 -172408059 - L2 LINE L2 -85 3187 3108 210 273 27 91 chr1 70256300 70256410 -172407943 - L2 LINE L2 -352 2920 2818 800 290 20 12 chr1 70256426 70256678 -172407675 - MIR SINE MIR -2 260 7 842 248 8 55 chr1 70258727 70258981 -172405372 - MIR SINE MIR -20 242 1 414 188 109 10 chr1 70259197 70259298 -172405055 + MIR SINE MIR 76 186 -76 1663 184 10 14 chr1 70259899 70260187 -172404166 - AluJb SINE Alu -25 287 1 606 182 0 53 chr1 70260266 70260398 -172403955 - L2 LINE L2 0 3313 3189 207 0 0 0 chr1 70260916 70260939 -172403414 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 198 302 132 0 chr1 70261357 70261463 -172402890 + MIR SINE MIR 87 206 -56 238 326 0 42 chr1 70262574 70262669 -172401684 - L2 LINE L2 -4 3309 3219 2065 131 0 31 chr1 70263747 70264068 -172400285 + AluSx SINE Alu 1 311 -1 502 388 4 26 chr1 70264650 70264921 -172399432 - L2 LINE L2 0 3272 3008 216 0 0 0 chr1 70264957 70264981 -172399372 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2277 91 3 10 chr1 70265008 70265305 -172399048 + AluSx SINE Alu 1 295 -17 2614 174 61 10 chr1 70265312 70265807 -172398546 + MLT2B1 LTR ERVL 1 520 0 385 326 66 62 chr1 70265930 70266188 -172398165 + MIR SINE MIR 4 262 0 301 239 152 0 chr1 70266732 70266824 -172397529 - L2 LINE L2 -11 3261 3156 520 246 155 0 chr1 70267265 70267407 -172396946 - MIR SINE MIR -30 232 69 316 186 43 0 chr1 70267866 70267936 -172396417 + MIR SINE MIR 57 129 -133 1184 292 65 31 chr1 70267941 70268464 -172395889 - L2 LINE L2 0 3313 2774 588 184 61 7 chr1 70270042 70270189 -172394164 + L1ME4a LINE L1 5955 6109 -12 355 290 118 11 chr1 70271908 70272101 -172392252 + MIR SINE MIR 38 251 -11 425 246 59 0 chr1 70272716 70272834 -172391519 - MIR SINE MIR -63 199 75 622 270 38 51 chr1 70273359 70273752 -172390601 + L1ME4a LINE L1 5497 5884 -237 432 252 56 0 chr1 70273752 70273859 -172390494 + MIR SINE MIR 106 218 -44 272 308 51 8 chr1 70274007 70274124 -172390229 - MIR SINE MIR -137 125 4 28 0 0 0 chr1 70274796 70274824 -172389529 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 70274898 70274923 -172389430 + AT_rich Low_complexity Low_complexity 1 25 0 750 258 140 22 chr1 70275018 70275247 -172389106 + MIR SINE MIR 7 262 0 295 237 53 0 chr1 70275270 70275346 -172389007 + L2 LINE L2 3155 3234 -38 355 349 114 0 chr1 70275574 70275740 -172388613 - L2 LINE L2 0 3272 3088 1233 144 82 43 chr1 70276112 70276417 -172387936 + MER33 DNA MER1_type 3 319 -5 249 196 0 0 chr1 70277019 70277075 -172387278 + GA-rich Low_complexity Low_complexity 2 57 0 241 239 30 75 chr1 70277080 70277214 -172387139 + L1ME4a LINE L1 5964 6091 -30 199 244 0 0 chr1 70277780 70277825 -172386528 - L2 LINE L2 -2 3311 3267 32 0 0 0 chr1 70278680 70278712 -172385641 + AT_rich Low_complexity Low_complexity 1 32 0 271 217 87 14 chr1 70281098 70281167 -172383186 + MIR SINE MIR 61 134 -128 287 261 29 0 chr1 70281433 70281502 -172382851 - L2 LINE L2 -55 3258 3188 238 283 0 0 chr1 70282140 70282193 -172382160 + L2 LINE L2 3206 3258 -14 275 329 0 0 chr1 70282384 70282457 -172381896 - L2 LINE L2 -2 3311 3239 2052 136 33 0 chr1 70282547 70282848 -172381505 - AluSx SINE Alu -1 311 1 2847 218 82 15 chr1 70282864 70283649 -172380704 + L1ME1 LINE L1 5317 6153 -13 2139 123 3 3 chr1 70283660 70283970 -172380383 - AluSx SINE Alu -2 310 1 598 318 85 5 chr1 70284187 70284410 -172379943 - MIR SINE MIR -14 248 8 1879 219 17 15 chr1 70284944 70285418 -172378935 - L1MB7 LINE L1 -1 6183 5709 441 293 113 7 chr1 70285424 70285574 -172378779 - MIR SINE MIR -82 180 15 1022 198 4 76 chr1 70285694 70285991 -172378362 + L1MA10 LINE L1 6056 6333 -1 587 293 26 5 chr1 70287947 70288146 -172376207 - MIR SINE MIR -60 202 1 436 295 77 66 chr1 70288447 70288796 -172375557 + L2 LINE L2 2856 3208 -64 2019 131 0 24 chr1 70288897 70289030 -172375323 + AluJb SINE Alu 14 149 -163 2174 107 70 14 chr1 70289030 70289385 -172374968 + THE1C LTR MaLR 1 375 0 2019 131 0 24 chr1 70289385 70289548 -172374805 + AluJb SINE Alu 149 303 -9 581 176 0 10 chr1 70289611 70289713 -172374640 + AluSg SINE Alu 1 101 -209 1983 140 7 0 chr1 70289814 70290093 -172374260 - AluSg SINE Alu -28 282 2 402 224 43 184 chr1 70290103 70290429 -172373924 + L2 LINE L2 3033 3312 -1 601 330 109 24 chr1 70291220 70291698 -172372655 + L2 LINE L2 2542 3071 -201 988 263 127 25 chr1 70291750 70292183 -172372170 + MLT1G LTR MaLR 1 477 -113 1987 205 85 66 chr1 70292189 70292823 -172371530 + MLT1E1 LTR MaLR 9 654 0 518 200 33 17 chr1 70292823 70292940 -172371413 + MLT1G LTR MaLR 472 590 0 278 278 43 56 chr1 70292940 70293102 -172371251 - L2 LINE L2 -71 3242 3083 183 274 32 0 chr1 70293577 70293639 -172370714 - L2 LINE L2 -211 3061 2998 425 277 102 0 chr1 70293688 70293854 -172370499 - MER117 DNA MER1_type 0 197 15 493 303 41 37 chr1 70294067 70294285 -172370068 + MIR SINE MIR 32 250 -12 22 0 0 0 chr1 70294287 70294309 -172370044 + AT_rich Low_complexity Low_complexity 1 22 0 377 252 84 42 chr1 70294657 70294717 -172369636 - L2 LINE L2 -1 3312 3256 987 179 27 54 chr1 70294717 70294941 -172369412 - MER20 DNA MER1_type -1 218 1 377 252 84 42 chr1 70294941 70295023 -172369330 - L2 LINE L2 -57 3256 3164 21 0 0 0 chr1 70295573 70295594 -172368759 + AT_rich Low_complexity Low_complexity 1 21 0 261 263 0 0 chr1 70296213 70296270 -172368083 + MIR SINE MIR 203 259 -3 303 242 168 11 chr1 70296560 70296655 -172367698 - MIR SINE MIR -12 250 141 247 351 0 0 chr1 70296664 70296741 -172367612 + L2 LINE L2 3196 3272 0 228 313 38 38 chr1 70296746 70296826 -172367527 - MIR SINE MIR -163 99 20 1595 191 43 0 chr1 70296836 70297161 -172367192 - MER58B DNA MER1_type 0 341 3 389 263 68 17 chr1 70298140 70298258 -172366095 - L2 LINE L2 -8 3264 3141 717 248 24 39 chr1 70298304 70298510 -172365843 - MIR SINE MIR -28 234 32 316 313 0 0 chr1 70298696 70298792 -172365561 - L2 LINE L2 -300 2972 2877 316 329 0 0 chr1 70298914 70298999 -172365354 - MIR SINE MIR -106 156 72 359 338 58 86 chr1 70299009 70299034 -172365319 - L2 LINE L2 0 3272 3248 1973 155 0 16 chr1 70299034 70299351 -172365002 + AluJo SINE Alu 1 312 0 359 338 58 86 chr1 70299351 70299793 -172364560 - L2 LINE L2 -24 3248 2818 299 220 0 0 chr1 70300108 70300158 -172364195 - L2 LINE L2 -5 3267 3218 211 313 0 0 chr1 70300883 70300950 -172363403 - MIR SINE MIR -10 252 186 1352 230 22 46 chr1 70301362 70301779 -172362574 - MLT1C LTR MaLR -2 465 59 185 105 0 26 chr1 70301982 70302020 -172362333 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 198 320 0 0 chr1 70302045 70302095 -172362258 + MIR SINE MIR 185 234 -28 376 238 146 33 chr1 70302135 70302286 -172362067 - MIR SINE MIR -93 169 2 2082 103 18 0 chr1 70302976 70303258 -172361095 - AluJb SINE Alu -24 288 2 291 311 12 6 chr1 70304375 70304539 -172359814 - MIR SINE MIR -3 259 3 360 207 200 15 chr1 70304564 70304699 -172359654 + MER112 DNA MER1_type 81 240 -20 649 290 29 5 chr1 70304951 70305158 -172359195 - L3 LINE CR1 -180 1397 1186 314 287 15 37 chr1 70305177 70305313 -172359040 - MLT1K LTR MaLR -36 552 420 363 286 62 43 chr1 70305386 70305547 -172358806 - MLT1K LTR MaLR -285 303 140 350 332 171 18 chr1 70305840 70306057 -172358296 + L2 LINE L2 3019 3268 -4 459 107 0 27 chr1 70306534 70306609 -172357744 + L1PA7 LINE L1 6074 6146 -8 2189 23 8 8 chr1 70306715 70306980 -172357373 + L1PA4 LINE L1 5888 6152 -3 304 380 19 6 chr1 70307823 70307981 -172356372 + MIR SINE MIR 97 256 -6 245 47 0 0 chr1 70308042 70308085 -172356268 + Alu SINE Alu 259 301 -2 1987 117 71 0 chr1 70308395 70308677 -172355676 - AluSx SINE Alu -10 302 1 1009 223 25 0 chr1 70308726 70308928 -172355425 + MIR SINE MIR 54 260 -2 221 250 29 15 chr1 70308950 70309018 -172355335 + MIR SINE MIR 194 262 0 2190 125 0 0 chr1 70309891 70310186 -172354167 - AluSx SINE Alu -17 295 1 2296 125 0 0 chr1 70310823 70311134 -172353219 - AluSx SINE Alu -1 311 1 260 196 0 0 chr1 70311180 70311226 -172353127 + MIR SINE MIR 201 246 -16 288 270 0 0 chr1 70311227 70311353 -172353000 + (CTA)n Simple_repeat Simple_repeat 1 126 0 1493 188 183 23 chr1 70311433 70311870 -172352483 + Charlie4a DNA MER1_type 2 508 0 491 287 55 12 chr1 70312036 70312200 -172352153 + MIR SINE MIR 43 213 -49 5346 195 71 27 chr1 70312216 70313608 -172350745 - Charlie1a DNA MER1_type -1 1454 2 576 153 0 89 chr1 70313633 70313757 -172350596 + Tigger3(Golem) DNA MER2_type 30 142 -2887 1417 124 86 0 chr1 70313763 70313996 -172350357 + Tigger3(Golem) DNA MER2_type 2776 3028 -1 322 246 29 0 chr1 70314228 70314297 -172350056 + L2 LINE L2 3202 3272 0 1728 124 105 0 chr1 70314619 70314885 -172349468 + AluSx SINE Alu 1 294 -18 2191 125 3 3 chr1 70315050 70315362 -172348991 - AluSx SINE Alu 0 312 1 25 0 0 0 chr1 70315426 70315451 -172348902 + AT_rich Low_complexity Low_complexity 1 25 0 2129 123 0 0 chr1 70315651 70315953 -172348400 + AluSx SINE Alu 1 302 -10 213 250 0 21 chr1 70316590 70316638 -172347715 + MIR SINE MIR 32 78 -130 190 136 45 0 chr1 70317124 70317168 -172347185 + GA-rich Low_complexity Low_complexity 3 48 0 410 224 50 101 chr1 70317306 70317525 -172346828 + L2 LINE L2 3052 3259 -54 207 333 32 11 chr1 70318241 70318334 -172346019 + MIR SINE MIR 50 144 -118 1287 199 76 72 chr1 70318407 70318487 -172345866 + MER39 LTR ERV1 259 337 -370 2271 120 0 0 chr1 70318487 70318796 -172345557 + AluSx SINE Alu 1 309 -3 1287 199 76 72 chr1 70318796 70319048 -172345305 + MER39 LTR ERV1 337 596 -111 15438 106 36 8 chr1 70319048 70321400 -172342953 - Tigger1 DNA MER2_type 0 2418 1 1287 199 76 72 chr1 70321400 70321513 -172342840 + MER39 LTR ERV1 596 707 0 651 188 51 14 chr1 70321689 70322007 -172342346 + FLAM_C SINE Alu 1 143 0 282 349 61 8 chr1 70322101 70322233 -172342120 + MIR SINE MIR 124 262 0 2196 82 10 3 chr1 70322255 70322548 -172341805 + AluSp SINE Alu 6 300 -13 183 80 0 0 chr1 70322549 70322574 -172341779 + (TA)n Simple_repeat Simple_repeat 1 25 0 357 266 65 29 chr1 70322948 70323087 -172341266 + MLT1A2 LTR MaLR 3 146 -228 1905 84 13 121 chr1 70323095 70323474 -172340879 + L1PB1 LINE L1 5717 6054 -97 896 163 0 7 chr1 70323540 70323687 -172340666 + FRAM SINE Alu 18 163 -13 996 193 38 14 chr1 70323698 70323910 -172340443 + MLT1A2 LTR MaLR 158 374 0 2312 68 17 0 chr1 70324326 70324450 -172339903 + AluY SINE Alu 1 121 -190 198 0 0 0 chr1 70324450 70324472 -172339881 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2312 68 17 0 chr1 70324472 70324640 -172339713 + AluY SINE Alu 121 298 -13 938 166 14 2 chr1 70324775 70325055 -172339298 + MER33 DNA MER1_type 1 324 0 758 276 90 31 chr1 70325112 70325402 -172338951 + MER102b DNA MER1_type 26 332 -9 326 279 196 28 chr1 70325477 70325656 -172338697 + MIR SINE MIR 54 262 0 2762 141 12 0 chr1 70326136 70326620 -172337733 + L1MA8 LINE L1 5254 5743 -548 383 111 0 42 chr1 70326674 70326746 -172337607 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 375 273 0 0 chr1 70326771 70326999 -172337354 + (TA)n Simple_repeat Simple_repeat 1 228 0 2380 135 42 36 chr1 70327067 70327571 -172336782 + L1MA8 LINE L1 5785 6291 0 2402 93 0 10 chr1 70328374 70328687 -172335666 + AluSg SINE Alu 1 310 0 21 57 0 0 chr1 70328973 70329008 -172335345 + AT_rich Low_complexity Low_complexity 1 35 0 2300 112 0 7 chr1 70329232 70329536 -172334817 - AluSc SINE Alu -7 302 1 1103 241 73 40 chr1 70329600 70330039 -172334314 - MER39 LTR ERV1 -43 664 2 22 35 0 0 chr1 70330048 70330077 -172334276 + AT_rich Low_complexity Low_complexity 1 29 0 1053 189 11 0 chr1 70330119 70330304 -172334049 + MER5A DNA MER1_type 3 189 0 477 252 84 38 chr1 70330309 70330654 -172333699 + L1MC5 LINE L1 7347 7707 -254 22 56 0 0 chr1 70330702 70330738 -172333615 + AT_rich Low_complexity Low_complexity 1 36 0 302 0 0 26 chr1 70330930 70330969 -172333384 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 498 234 0 0 chr1 70330976 70331070 -172333283 - 5S rRNA rRNA 0 121 28 242 247 89 125 chr1 70331073 70331100 -172333253 + L1ME4a LINE L1 5677 5703 -418 2185 90 11 0 chr1 70331100 70331448 -172332905 + AluSx SINE Alu 1 351 0 242 247 89 125 chr1 70331448 70331836 -172332517 + L1ME4a LINE L1 5703 6078 -43 1220 163 112 54 chr1 70331895 70332190 -172332163 + AluJo SINE Alu 1 312 0 490 295 52 21 chr1 70332223 70332416 -172331937 + L3 LINE CR1 1367 1565 -12 191 265 82 0 chr1 70332430 70332479 -172331874 - L2 LINE L2 -71 3201 3149 889 242 96 25 chr1 70333147 70333461 -172330892 - MLT1J1 LTR MaLR -71 375 40 258 53 0 0 chr1 70334016 70334054 -172330299 - HY3 scRNA scRNA -1 100 63 577 261 6 32 chr1 70334172 70334329 -172330024 + MIR SINE MIR 110 262 0 239 290 0 16 chr1 70334495 70334557 -172329796 - MER5A DNA MER1_type -34 155 95 282 232 72 14 chr1 70334578 70334647 -172329706 + MER91C DNA MER1_type 33 105 -35 232 342 26 26 chr1 70334633 70334747 -172329606 - MER5A DNA MER1_type -75 114 1 * 467 354 66 9 chr1 70335395 70335621 -172328732 + L3 LINE CR1 1268 1506 -71 * 483 307 151 38 chr1 70335598 70335943 -172328410 + L2 LINE L2 2930 3313 0 255 261 14 14 chr1 70336543 70336612 -172327741 - L2 LINE L2 -3 3269 3201 1268 283 94 24 chr1 70337388 70338061 -172326292 - L2 LINE L2 -61 3252 2526 478 277 36 87 chr1 70338293 70338344 -172326009 - MIR SINE MIR -67 141 89 2281 106 0 0 chr1 70338344 70338645 -172325708 - AluSx SINE Alu -11 301 1 478 277 36 87 chr1 70338645 70338788 -172325565 - MIR SINE MIR -119 89 7 2328 87 3 3 chr1 70339215 70339513 -172324840 + AluSc SINE Alu 1 298 -11 249 287 64 11 chr1 70339610 70339704 -172324649 - L2 LINE L2 -24 3289 3191 683 238 111 17 chr1 70339806 70339978 -172324375 - MIR SINE MIR -65 197 10 756 186 87 6 chr1 70339980 70340141 -172324212 - MER69A DNA AcHobo -2 175 2 198 340 0 0 chr1 70340324 70340371 -172323982 - L2 LINE L2 -10 3262 3216 1975 111 0 38 chr1 70340398 70340686 -172323667 + AluSx SINE Alu 21 297 -15 256 262 8 52 chr1 70340854 70340982 -172323371 - MIR SINE MIR -94 168 7 2088 180 97 32 chr1 70341439 70341912 -172322441 - MLT1D LTR MaLR 0 505 2 365 173 49 12 chr1 70342206 70342287 -172322066 - MIR SINE MIR -82 180 97 770 286 78 0 chr1 70342399 70342616 -172321737 + MIR SINE MIR 29 262 0 22 35 0 0 chr1 70345282 70345311 -172319042 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr1 70346442 70346469 -172317884 + (CA)n Simple_repeat Simple_repeat 2 28 0 227 238 75 25 chr1 70346836 70346916 -172317437 + MIR SINE MIR 144 227 -35 1043 242 169 8 chr1 70347448 70347820 -172316533 + L2 LINE L2 2274 2705 -609 2254 113 3 0 chr1 70348030 70348340 -172316013 - AluSq SINE Alu -2 311 1 334 292 123 62 chr1 70348391 70348689 -172315664 - MLT1J LTR MaLR -2 509 230 306 0 0 0 chr1 70348689 70348723 -172315630 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1841 167 0 0 chr1 70348725 70349006 -172315347 - AluJb SINE Alu -29 283 3 334 292 123 62 chr1 70349006 70349184 -172315169 - MLT1J LTR MaLR -281 230 1 325 228 46 87 chr1 70349220 70349439 -172314914 - L1ME3A LINE L1 -234 5936 5727 466 313 100 43 chr1 70349474 70349685 -172314668 + L2 LINE L2 2701 2934 -379 554 193 187 7 chr1 70349685 70349835 -172314518 - MER69A DNA AcHobo 0 177 1 466 313 100 43 chr1 70349835 70349923 -172314430 + L2 LINE L2 2934 3016 -297 1014 252 134 42 chr1 70349923 70350379 -172313974 + MLT1J LTR MaLR 3 500 -11 861 261 19 84 chr1 70350386 70350481 -172313872 + L2 LINE L2 3012 3112 -201 3633 137 6 2 chr1 70350481 70351006 -172313347 + MER1A DNA MER1_type 1 527 0 861 261 19 84 chr1 70351006 70351232 -172313121 + L2 LINE L2 3112 3312 -1 266 301 65 32 chr1 70351266 70351389 -172312964 + L2 LINE L2 3187 3313 0 5950 89 16 16 chr1 70351664 70351903 -172312450 - L1MA2 LINE L1 0 6304 6066 2322 95 0 0 chr1 70351903 70352197 -172312156 - AluSp SINE Alu -19 294 1 5950 89 16 16 chr1 70352197 70352832 -172311521 - L1MA2 LINE L1 -237 6067 5430 389 250 11 0 chr1 70352832 70352924 -172311429 - MIR SINE MIR -17 245 153 968 213 83 45 chr1 70352928 70353242 -172311111 - MER46C DNA MER2_type -4 334 9 205 306 63 54 chr1 70353268 70353379 -172310974 - MIR SINE MIR -146 116 5 251 318 99 26 chr1 70353631 70353782 -172310571 - L2 LINE L2 0 3313 3152 2089 127 7 0 chr1 70355668 70355967 -172308386 + AluSx SINE Alu 1 301 -11 1291 256 16 0 chr1 70356319 70356628 -172307725 + L2 LINE L2 1396 1709 -1605 888 249 51 121 chr1 70356636 70357165 -172307188 + L1MC4 LINE L1 7245 7693 -349 1926 165 0 3 chr1 70357165 70357456 -172306897 + AluJo SINE Alu 1 290 -22 888 249 51 121 chr1 70357456 70357784 -172306569 + L1MC4 LINE L1 7693 8042 0 1872 265 64 12 chr1 70357804 70358294 -172306059 + L2 LINE L2 1717 2244 -1070 2328 57 0 3 chr1 70358294 70358603 -172305750 + AluY SINE Alu 1 308 0 1872 265 64 12 chr1 70358603 70358693 -172305660 + L2 LINE L2 2244 2328 -986 3958 169 14 70 chr1 70358766 70359463 -172304890 + L1MB7 LINE L1 4923 5658 -526 6310 80 34 3 chr1 70359463 70360384 -172303969 + L1PA7 LINE L1 5207 6154 0 3958 169 14 70 chr1 70360384 70360880 -172303473 + L1MB7 LINE L1 5658 6032 -152 941 100 0 15 chr1 70360880 70361010 -172303343 + FLAM_C SINE Alu 1 128 -5 3958 169 14 70 chr1 70361010 70361068 -172303285 + L1MB7 LINE L1 6032 6092 -92 2291 99 0 0 chr1 70361071 70361365 -172302988 - AluSc SINE Alu -11 298 5 299 135 0 0 chr1 70361422 70361474 -172302879 + L1MB7 LINE L1 6102 6153 -31 1368 168 48 4 chr1 70361474 70361742 -172302611 + Tigger3(Golem) DNA MER2_type 2 281 -2748 320 222 0 93 chr1 70361749 70361857 -172302496 + L1MA10 LINE L1 6176 6273 -61 1637 145 0 0 chr1 70361873 70362100 -172302253 + AluSx SINE Alu 1 227 -85 843 131 16 0 chr1 70362100 70362222 -172302131 + AluSg/x SINE Alu 170 293 -19 243 210 0 0 chr1 70362232 70362294 -172302059 + L1MA10 LINE L1 6264 6325 -9 265 228 11 76 chr1 70364077 70364169 -172300184 + MIR SINE MIR 106 191 -71 23 33 0 0 chr1 70364205 70364235 -172300118 + AT_rich Low_complexity Low_complexity 1 30 0 1894 154 14 0 chr1 70364353 70364639 -172299714 - AluJb SINE Alu -22 290 1 206 167 24 0 chr1 70364686 70364728 -172299625 + MIR SINE MIR 70 112 -150 3360 122 13 70 chr1 70364835 70365441 -172298912 + L1MA5A LINE L1 5283 5815 -380 1909 165 10 0 chr1 70365441 70365738 -172298615 + AluSx SINE Alu 1 300 -12 3360 122 13 70 chr1 70365738 70365928 -172298425 + L1MA5A LINE L1 5815 6014 -181 1508 108 21 4 chr1 70366029 70366270 -172298083 + L1MA5A LINE L1 6051 6295 -2 215 250 19 19 chr1 70366321 70366373 -172297980 - L2 LINE L2 -7 3306 3255 2304 68 14 0 chr1 70366756 70367076 -172297277 + AluSp SINE Alu 1 324 0 506 290 98 21 chr1 70368600 70368793 -172295560 + MIR SINE MIR 53 260 -2 1287 207 114 129 chr1 70368828 70369088 -172295265 + L1M4 LINE L1 3251 3513 -2633 868 144 8 0 chr1 70369088 70369220 -172295133 + FLAM_C SINE Alu 1 133 0 1287 207 114 129 chr1 70369220 70369294 -172295059 + L1M4 LINE L1 3513 3587 -2559 2189 132 0 0 chr1 70369294 70369597 -172294756 + AluSx SINE Alu 1 303 -9 1287 207 114 129 chr1 70369597 70369808 -172294545 + L1M4 LINE L1 3587 3800 -2346 2091 123 0 0 chr1 70369808 70370100 -172294253 + AluSx SINE Alu 1 292 -20 1287 207 114 129 chr1 70370100 70370483 -172293870 + L1M4 LINE L1 3800 4167 -1979 1880 124 37 0 chr1 70370534 70370841 -172293512 - AluY SINE Alu 0 317 1 22 0 0 0 chr1 70370841 70370863 -172293490 + AT_rich Low_complexity Low_complexity 1 22 0 1214 168 46 15 chr1 70371039 70371301 -172293052 + MLT1A1 LTR MaLR 10 279 -86 1003 208 140 81 chr1 70371894 70371992 -172292361 - MLT1G1 LTR MaLR 0 530 439 2365 56 3 88 chr1 70371992 70372334 -172292019 - AluSp SINE Alu 0 313 1 1003 208 140 81 chr1 70372334 70372700 -172291653 - MLT1G1 LTR MaLR -91 439 117 2452 82 0 0 chr1 70372700 70372993 -172291360 + AluSc SINE Alu 1 293 -16 1003 208 140 81 chr1 70372993 70373118 -172291235 - MLT1G1 LTR MaLR -413 117 1 253 336 23 0 chr1 70373736 70373864 -172290489 + CT-rich Low_complexity Low_complexity 3 133 0 292 294 109 76 chr1 70374210 70374286 -172290067 + L2 LINE L2 1710 1782 -1532 1993 125 14 0 chr1 70374286 70374600 -172289753 + AluSx SINE Alu 1 318 0 292 294 109 76 chr1 70374600 70374798 -172289555 + L2 LINE L2 1782 1994 -1320 332 214 61 38 chr1 70374850 70374981 -172289372 - L1M4 LINE L1 -2940 3206 3073 1149 113 32 5 chr1 70375020 70375242 -172289111 - L1MB3 LINE L1 -31 6152 5923 405 278 33 25 chr1 70375218 70375463 -172288890 - L1M4 LINE L1 -3090 3056 2810 * 726 255 86 51 chr1 70375591 70375964 -172288389 - MLT1L LTR MaLR -33 582 197 986 157 0 0 chr1 70376191 70376350 -172288003 + L1MC/D LINE L1 5467 5625 -708 3505 226 18 2 chr1 70376363 70377273 -172287080 - L1M4 LINE L1 -758 5388 4465 21 36 0 0 chr1 70377280 70377308 -172287045 + AT_rich Low_complexity Low_complexity 1 28 0 4260 184 39 24 chr1 70377423 70377587 -172286766 - L1MB2 LINE L1 -36 6135 5975 558 64 0 0 chr1 70377587 70377665 -172286688 - L1PA12 LINE L1 0 6168 6091 4260 184 39 24 chr1 70377665 70377935 -172286418 - L1MB2 LINE L1 -196 5975 5711 928 80 29 15 chr1 70377935 70378072 -172286281 + MER85 DNA T2_type 1 139 0 4260 184 39 24 chr1 70378072 70378137 -172286216 - L1MB2 LINE L1 -460 5711 5648 1853 141 42 48 chr1 70378137 70378209 -172286144 - THE1C LTR MaLR 0 375 304 2144 93 38 0 chr1 70378209 70378500 -172285853 + AluSg SINE Alu 1 302 -8 1853 141 42 48 chr1 70378500 70378804 -172285549 - THE1C LTR MaLR -71 304 1 4260 184 39 24 chr1 70378804 70379400 -172284953 - L1MB2 LINE L1 -523 5648 5063 2390 88 3 0 chr1 70379400 70379694 -172284659 - AluSp SINE Alu -18 295 1 4260 184 39 24 chr1 70379694 70380483 -172283870 - L1MB2 LINE L1 -1108 5063 4217 305 331 80 41 chr1 70380547 70381133 -172283220 - L1MEd LINE L1 -5263 856 248 1992 149 0 0 chr1 70381140 70381441 -172282912 + AluSx SINE Alu 3 303 -9 500 133 0 0 chr1 70381959 70382034 -172282319 + AluSx SINE Alu 1 75 -238 507 105 31 4 chr1 70382034 70382130 -172282223 - L1 LINE L1 -1803 4343 4252 1634 117 9 0 chr1 70382132 70382362 -172281991 + AluSx SINE Alu 77 308 -2 938 230 61 38 chr1 70382366 70382728 -172281625 + MLT2A2 LTR ERVL 104 489 -65 1972 94 0 0 chr1 70382830 70383117 -172281236 + AluSq SINE Alu 38 313 0 401 111 0 0 chr1 70383117 70383180 -172281173 + MLT2A2 LTR ERVL 391 453 0 388 182 36 45 chr1 70383694 70383804 -172280549 + 7SK RNA RNA 1 109 -84 202 339 127 0 chr1 70384212 70384330 -172280023 + L2 LINE L2 2196 2328 -986 188 286 0 0 chr1 70384333 70384375 -172279978 - L2 LINE L2 -15 3298 3257 387 0 0 0 chr1 70384448 70384491 -172279862 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7065 7 0 1 chr1 70384491 70385313 -172279040 - L1HS LINE L1 -10 6145 5323 * 15614 23 0 0 chr1 70385306 70387228 -172277125 + L1HS LINE L1 3420 5341 -805 262 345 54 20 chr1 70387253 70387401 -172276952 - MIR SINE MIR -20 242 90 235 232 0 49 chr1 70388587 70388669 -172275684 - MER116 DNA Mariner 0 80 3 559 242 0 16 chr1 70388669 70388793 -172275560 + FLAM_A SINE Alu 1 122 -11 23 0 0 0 chr1 70388793 70388816 -172275537 + AT_rich Low_complexity Low_complexity 1 23 0 310 212 94 24 chr1 70389881 70389909 -172274444 + L2 LINE L2 3182 3207 -65 1407 160 31 141 chr1 70389909 70390327 -172274026 - MLT1A2 LTR MaLR -1 373 2 310 212 94 24 chr1 70390327 70390383 -172273970 + L2 LINE L2 3207 3272 0 503 115 115 48 chr1 70390564 70390579 -172273774 - FLAM_C SINE Alu -169 143 130 2190 127 3 7 chr1 70390579 70390887 -172273466 - AluSx SINE Alu -5 307 1 503 115 115 48 chr1 70390887 70390975 -172273378 - FLAM_C SINE Alu -182 130 33 712 267 39 47 chr1 70391861 70392116 -172272237 - MIR SINE MIR 0 262 10 2014 147 3 10 chr1 70392153 70392467 -172271886 + AluSx SINE Alu 1 312 0 2006 252 111 29 chr1 70393519 70394627 -172269726 + L1MEc LINE L1 90 1211 -5006 334 203 14 27 chr1 70394722 70394796 -172269557 + Tigger2 DNA MER2_type 1 73 -2645 877 215 0 6 chr1 70394829 70395006 -172269347 - MER8 DNA MER2_type -62 177 2 1934 86 64 4 chr1 70395070 70395370 -172268983 - AluSp SINE Alu 0 316 1 203 211 359 42 chr1 70395758 70395900 -172268453 + L3b LINE CR1 1256 1442 -141 1536 164 3 77 chr1 70395932 70396242 -172268111 - AluJb SINE Alu -25 287 1 1472 179 44 37 chr1 70396668 70396965 -172267388 - AluJb SINE Alu -13 299 1 2072 131 0 3 chr1 70397031 70397342 -172267011 + AluSx SINE Alu 1 310 0 520 352 96 0 chr1 70397838 70398057 -172266296 + L3 LINE CR1 1308 1547 -30 2218 104 7 0 chr1 70398064 70398363 -172265990 + AluSx SINE Alu 1 301 -11 953 209 6 0 chr1 70398376 70398548 -172265805 + FAM SINE Alu 3 175 0 346 295 57 9 chr1 70398683 70398788 -172265565 + MIR SINE MIR 21 130 -78 21 0 0 0 chr1 70399620 70399641 -172264712 + AT_rich Low_complexity Low_complexity 1 21 0 1974 135 0 35 chr1 70399641 70399953 -172264400 + AluJo SINE Alu 1 301 -11 1544 185 31 57 chr1 70400429 70400813 -172263540 + MLT1B LTR MaLR 1 374 -16 21 0 0 0 chr1 70401508 70401529 -172262824 + AT_rich Low_complexity Low_complexity 1 21 0 205 439 56 0 chr1 70402498 70402605 -172261748 + L2 LINE L2 3117 3229 -43 2304 104 3 0 chr1 70403300 70403597 -172260756 + AluSx SINE Alu 1 298 -14 547 157 10 29 chr1 70403665 70403767 -172260586 - FRAM SINE Alu -12 164 65 598 239 50 35 chr1 70404137 70404518 -172259835 + MLT1J LTR MaLR 29 459 -52 671 226 81 68 chr1 70404607 70404842 -172259511 - MIR SINE MIR -24 238 1 184 359 94 26 chr1 70405047 70405164 -172259189 + L2 LINE L2 3096 3220 -52 2034 141 3 7 chr1 70405210 70405509 -172258844 + AluJb SINE Alu 1 298 -14 686 211 0 0 chr1 70405598 70405726 -172258627 + MER3 DNA MER1_type 2 129 -80 209 56 0 28 chr1 70405728 70405764 -172258589 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 204 196 0 39 chr1 70405988 70406039 -172258314 + A-rich Low_complexity Low_complexity 2 50 0 2052 142 0 22 chr1 70407479 70407797 -172256556 + AluSx SINE Alu 1 311 -1 232 311 115 40 chr1 70407838 70407986 -172256367 - MIR SINE MIR 0 262 104 656 132 22 0 chr1 70408108 70408199 -172256154 - AluJ/FLAM SINE Alu -219 93 1 579 275 120 18 chr1 70408366 70408700 -172255653 - L1MC4a LINE L1 -1866 5942 5575 372 302 166 0 chr1 70408817 70408986 -172255367 + MLT1K LTR MaLR 47 243 -345 427 253 0 10 chr1 70409178 70409277 -172255076 + MLT1K LTR MaLR 482 579 -9 1853 155 7 14 chr1 70409343 70409640 -172254713 + AluJo SINE Alu 1 295 -17 1594 192 17 13 chr1 70410280 70410582 -172253771 + AluJo SINE Alu 1 303 -9 2077 117 0 49 chr1 70410591 70410899 -172253454 + AluSx SINE Alu 1 293 -19 451 214 19 0 chr1 70411218 70411321 -172253032 - MIR SINE MIR -61 201 97 1830 164 0 11 chr1 70411323 70411609 -172252744 + AluJb SINE Alu 3 285 -27 930 141 0 0 chr1 70411609 70411765 -172252588 + (GGA)n Simple_repeat Simple_repeat 3 158 0 302 238 168 50 chr1 70411775 70411876 -172252477 - MIR SINE MIR -128 134 22 263 289 21 31 chr1 70411976 70412073 -172252280 + L2 LINE L2 3218 3313 0 308 333 46 20 chr1 70412194 70412347 -172252006 + MIR3 SINE MIR 6 162 -46 2472 63 7 0 chr1 70412477 70412776 -172251577 + AluSp SINE Alu 1 301 -12 185 300 0 33 chr1 70414696 70414756 -172249597 + MIR SINE MIR 72 130 -78 1943 125 17 0 chr1 70414760 70415071 -172249282 - AluSx SINE Alu 0 312 5 2125 124 0 13 chr1 70415094 70415408 -172248945 - AluSx SINE Alu -2 310 1 498 98 0 0 chr1 70415645 70415706 -172248647 - Alu SINE Alu -256 62 2 193 297 109 39 chr1 70415711 70415839 -172248514 + MIR SINE MIR 126 262 0 * 196 310 70 0 chr1 70415829 70415900 -172248453 - MIR SINE MIR -105 157 82 1946 110 96 3 chr1 70415959 70416241 -172248112 + AluSx SINE Alu 1 308 -4 2390 79 0 0 chr1 70416745 70417035 -172247318 + AluSc SINE Alu 1 290 -19 248 297 0 14 chr1 70417368 70417442 -172246911 - Charlie4 DNA MER1_type -6 1955 1883 264 122 0 0 chr1 70417447 70417488 -172246865 + (TA)n Simple_repeat Simple_repeat 1 41 0 360 290 72 22 chr1 70417629 70417767 -172246586 - MIR3 SINE MIR -62 146 2 717 220 8 0 chr1 70418059 70418191 -172246162 - FLAM_C SINE Alu -9 134 2 269 159 23 0 chr1 70418304 70418348 -172246005 + L2 LINE L2 3224 3268 -4 1238 186 18 9 chr1 70418419 70418639 -172245714 + AluJo SINE Alu 86 307 -5 22 0 0 0 chr1 70420967 70420989 -172243364 + AT_rich Low_complexity Low_complexity 1 22 0 788 282 79 17 chr1 70422515 70422756 -172241597 + MIR SINE MIR 5 260 -2 294 316 21 0 chr1 70422761 70422856 -172241497 + CT-rich Low_complexity Low_complexity 3 99 0 876 138 0 14 chr1 70423403 70423541 -172240812 + FLAM_C SINE Alu 1 136 -7 198 264 19 0 chr1 70423702 70423755 -172240598 + MIR SINE MIR 68 121 -141 22 35 0 0 chr1 70424381 70424410 -172239943 + AT_rich Low_complexity Low_complexity 1 29 0 2267 112 10 0 chr1 70424420 70424716 -172239637 + AluSg SINE Alu 1 299 -11 856 151 0 8 chr1 70424727 70424846 -172239507 + FLAM_A SINE Alu 3 120 -13 2656 194 37 46 chr1 70424888 70425435 -172238918 - MLT1F LTR MaLR 0 542 1 473 191 0 0 chr1 70426074 70426158 -172238195 + MIR SINE MIR 44 127 -81 199 91 26 91 chr1 70426855 70426932 -172237421 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 327 278 11 0 chr1 70427003 70427093 -172237260 + L2 LINE L2 3182 3272 0 2396 53 4 0 chr1 70428058 70428380 -172235973 + AluY SINE Alu 3 325 0 1962 100 0 0 chr1 70428438 70428688 -172235665 + AluSg SINE Alu 2 251 -59 225 132 0 0 chr1 70428688 70428726 -172235627 + (A)n Simple_repeat Simple_repeat 1 38 0 1906 109 98 3 chr1 70428857 70429142 -172235211 + AluSx SINE Alu 1 312 0 2573 61 0 10 chr1 70429263 70429575 -172234778 - AluY SINE Alu -2 309 1 1994 139 14 0 chr1 70429701 70429988 -172234365 + AluSx SINE Alu 1 291 -21 2346 92 0 0 chr1 70430060 70430352 -172234001 - AluY SINE Alu -19 292 1 4739 216 30 126 chr1 70430387 70433073 -172231280 + L1M3e LINE L1 1 2445 -4592 2272 104 131 8 chr1 70433084 70433450 -172230903 - MSTA LTR MaLR -17 411 1 375 267 0 0 chr1 70433450 70433536 -172230817 + L1M3e LINE L1 2426 2511 -4516 2250 136 0 0 chr1 70433542 70433851 -172230502 + AluSx SINE Alu 3 311 -1 1180 149 0 0 chr1 70433851 70434025 -172230328 + AluSg/x SINE Alu 134 307 -5 2686 251 90 37 chr1 70434033 70435131 -172229222 + L1MEc LINE L1 2640 3670 -3895 2167 102 7 3 chr1 70435142 70435446 -172228907 + AluSx SINE Alu 1 305 0 4904 135 25 7 chr1 70435449 70436271 -172228082 + L1 LINE L1 3959 4795 -1351 31 0 0 0 chr1 70436329 70436360 -172227993 + AT_rich Low_complexity Low_complexity 1 31 0 230 292 28 14 chr1 70436813 70436885 -172227468 - MER117 DNA MER1_type -56 141 69 2013 123 32 29 chr1 70436885 70437193 -172227160 + AluSx SINE Alu 1 309 -3 2134 93 21 0 chr1 70437288 70437577 -172226776 + AluSg SINE Alu 1 295 -15 2277 71 24 14 chr1 70437577 70437872 -172226481 + AluY SINE Alu 1 298 -13 306 329 145 7 chr1 70437874 70438068 -172226285 + MIR SINE MIR 30 255 -7 598 301 87 35 chr1 70438202 70438270 -172226083 + L2 LINE L2 3001 3064 -249 1646 164 7 0 chr1 70438270 70438572 -172225781 + AluJo SINE Alu 12 315 0 598 301 87 35 chr1 70438572 70438788 -172225565 + L2 LINE L2 3064 3301 -12 2279 105 0 0 chr1 70438788 70439083 -172225270 + AluSg SINE Alu 1 295 -15 972 228 81 127 chr1 70439096 70439591 -172224762 - Charlie7 DNA MER1_type -1939 673 202 264 149 0 0 chr1 70440419 70440466 -172223887 + (CA)n Simple_repeat Simple_repeat 2 48 0 739 274 63 23 chr1 70440552 70440769 -172223584 - MARNA DNA Mariner -72 514 280 1828 101 72 14 chr1 70440769 70441047 -172223306 + AluSc SINE Alu 1 294 -15 739 274 63 23 chr1 70441047 70441128 -172223225 - MARNA DNA Mariner -306 280 204 201 176 0 0 chr1 70441380 70441414 -172222939 + (TA)n Simple_repeat Simple_repeat 1 34 0 2463 55 3 32 chr1 70441496 70441806 -172222547 - AluY SINE Alu -10 301 1 22 56 0 0 chr1 70442289 70442325 -172222028 + AT_rich Low_complexity Low_complexity 1 36 0 366 192 172 0 chr1 70442360 70442459 -172221894 - L1MA9 LINE L1 -50 6262 6147 2340 93 0 0 chr1 70442635 70442926 -172221427 + AluY SINE Alu 14 304 -7 2023 122 3 3 chr1 70442933 70443220 -172221133 + AluSx SINE Alu 1 287 -25 217 259 0 0 chr1 70443221 70443275 -172221078 + (TA)n Simple_repeat Simple_repeat 1 54 0 1448 142 12 32 chr1 70443278 70443525 -172220828 - MER2 DNA MER2_type -90 255 14 2238 114 0 0 chr1 70443581 70443870 -172220483 - AluSx SINE Alu -23 289 1 205 342 38 0 chr1 70443910 70443989 -172220364 + L2 LINE L2 3137 3218 -54 1100 75 0 0 chr1 70444120 70444253 -172220100 - AluSq/x SINE Alu -180 133 1 545 275 124 5 chr1 70444311 70444504 -172219849 + MIR SINE MIR 47 262 0 558 240 0 8 chr1 70444751 70444872 -172219481 - L2 LINE L2 -4 3309 3190 2384 95 0 0 chr1 70444981 70445277 -172219076 + AluSg SINE Alu 1 296 -14 2222 79 3 57 chr1 70445285 70445600 -172218753 + AluSp SINE Alu 1 298 -15 2299 109 0 0 chr1 70445738 70446049 -172218304 + AluY SINE Alu 1 311 0 2243 88 3 0 chr1 70446071 70446386 -172217967 - AluSp SINE Alu 0 316 1 723 106 0 19 chr1 70446411 70446515 -172217838 + AluSg/x SINE Alu 207 308 -1 1344 150 26 0 chr1 70446653 70446879 -172217474 + L1MC1 LINE L1 5940 6171 -162 562 180 0 0 chr1 70446879 70446968 -172217385 - Tigger7 DNA MER2_type 0 2487 2399 * 1292 104 6 0 chr1 70446966 70447148 -172217205 - Tigger7 DNA MER2_type -1983 504 322 886 198 6 0 chr1 70447148 70447315 -172217038 - FRAM SINE Alu -8 168 1 1532 182 52 31 chr1 70447316 70447607 -172216746 - Tigger7 DNA MER2_type -405 328 32 1169 120 0 18 chr1 70447621 70447788 -172216565 + L1MC1 LINE L1 6168 6331 -2 2190 128 3 3 chr1 70447802 70448114 -172216239 - AluSx SINE Alu 0 312 1 2117 84 49 0 chr1 70448288 70448575 -172215778 - AluY SINE Alu -10 301 1 670 189 118 84 chr1 70448588 70448826 -172215527 - MER112 DNA MER1_type -7 253 8 2456 89 3 16 chr1 70448973 70449289 -172215064 - AluSp SINE Alu -1 312 1 443 324 112 6 chr1 70450961 70451140 -172213213 + MIR SINE MIR 9 206 -56 274 331 0 33 chr1 70451154 70451305 -172213048 + GA-rich Low_complexity Low_complexity 2 147 0 294 286 16 63 chr1 70451368 70451494 -172212859 + L2 LINE L2 1114 1233 -2081 957 45 0 0 chr1 70451508 70451642 -172212711 - AluSp/q SINE Alu 0 308 175 366 247 0 0 chr1 70451673 70451754 -172212599 - MLT1L LTR MaLR -113 502 422 639 288 50 14 chr1 70451801 70452023 -172212330 - MLT1L LTR MaLR -297 318 89 246 254 28 14 chr1 70452066 70452137 -172212216 + MLT1F1-int LTR MaLR 812 883 -488 820 252 18 122 chr1 70452272 70452673 -172211680 + MLT1F1-int LTR MaLR 989 1347 -24 1370 212 161 62 chr1 70452685 70452861 -172211492 + MLT1F1 LTR MaLR 1 158 -409 1921 124 65 0 chr1 70452861 70453136 -172211217 + AluSp SINE Alu 2 294 -19 2390 90 0 0 chr1 70453141 70453442 -172210911 - AluSx SINE Alu -11 301 1 1370 212 161 62 chr1 70453442 70453772 -172210581 + MLT1F1 LTR MaLR 161 557 -10 2350 91 3 0 chr1 70453875 70454171 -172210182 + AluSg SINE Alu 1 297 -13 485 259 295 10 chr1 70454450 70454643 -172209710 + MIR SINE MIR 2 249 -13 2248 107 0 3 chr1 70454931 70455229 -172209124 + AluSq SINE Alu 1 297 -16 435 309 8 0 chr1 70455245 70455371 -172208982 + MER94 DNA DNA 1 127 -7 774 186 24 0 chr1 70455632 70455756 -172208597 + FLAM_A SINE Alu 1 127 -6 239 324 139 32 chr1 70455777 70455897 -172208456 + L2 LINE L2 1959 2065 -1249 2268 100 0 3 chr1 70455897 70456196 -172208157 - AluSg SINE Alu -12 298 1 239 324 139 32 chr1 70456196 70456356 -172207997 + L2 LINE L2 2065 2269 -1045 737 162 132 88 chr1 70456365 70456484 -172207869 + MER33 DNA MER1_type 1 113 -2472 2548 57 0 16 chr1 70456484 70456800 -172207553 + AluY SINE Alu 1 311 0 737 162 132 88 chr1 70456800 70456908 -172207445 + MER33 DNA MER1_type 113 238 -86 1890 87 11 19 chr1 70456970 70457125 -172207228 - L1MA2 LINE L1 -4 6300 6145 209 30 61 0 chr1 70457125 70457158 -172207195 + T-rich Low_complexity Low_complexity 1 35 0 2077 125 0 0 chr1 70457158 70457439 -172206914 - AluSx SINE Alu -31 281 1 1890 87 11 19 chr1 70457439 70457548 -172206805 - L1MA2 LINE L1 -157 6147 6037 281 148 19 0 chr1 70457548 70457602 -172206751 + MER33 DNA MER1_type 282 336 -27 269 282 39 0 chr1 70457609 70457687 -172206666 + L2 LINE L2 2294 2374 -940 262 360 0 0 chr1 70457687 70457776 -172206577 + L2 LINE L2 2662 2750 -564 183 80 0 0 chr1 70457787 70457812 -172206541 + (A)n Simple_repeat Simple_repeat 1 25 0 191 61 30 0 chr1 70457917 70457950 -172206403 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 770 201 73 22 chr1 70457979 70458158 -172206195 - MIR SINE MIR -10 252 65 1662 168 20 3 chr1 70458318 70458615 -172205738 - AluJo SINE Alu -6 306 5 195 374 94 17 chr1 70458726 70459076 -172205277 + L2 LINE L2 2381 2757 -557 2167 53 43 0 chr1 70459295 70459576 -172204777 - AluY SINE Alu -13 298 6 407 242 31 62 chr1 70459769 70459897 -172204456 - L2 LINE L2 -6 3307 3184 1794 151 0 20 chr1 70460745 70461050 -172203303 + AluJo SINE Alu 1 299 -13 32 26 0 0 chr1 70465823 70465862 -172198491 + AT_rich Low_complexity Low_complexity 1 39 0 247 255 9 28 chr1 70468273 70468379 -172195974 + (CGG)n Simple_repeat Simple_repeat 2 105 0 24 0 0 0 chr1 70468779 70468803 -172195550 + GC_rich Low_complexity Low_complexity 1 24 0 195 114 0 0 chr1 70468862 70468897 -172195456 + (CGG)n Simple_repeat Simple_repeat 1 35 0 22 70 0 0 chr1 70469040 70469083 -172195270 + GC_rich Low_complexity Low_complexity 1 43 0 205 162 0 0 chr1 70469372 70469409 -172194944 + (CCG)n Simple_repeat Simple_repeat 3 39 0 21 0 0 0 chr1 70469921 70469942 -172194411 + AT_rich Low_complexity Low_complexity 1 21 0 246 331 63 35 chr1 70473333 70473475 -172190878 + MIR SINE MIR 71 216 -46 194 308 112 0 chr1 70474375 70474482 -172189871 - MIR3 SINE MIR -9 199 81 183 276 66 26 chr1 70475733 70475809 -172188544 + L2 LINE L2 3233 3311 -2 454 273 47 47 chr1 70476089 70476261 -172188092 - L3 LINE CR1 -46 1531 1360 555 279 7 15 chr1 70477856 70477992 -172186361 + MIR SINE MIR 20 154 -108 383 123 18 0 chr1 70478698 70478755 -172185598 + U7 snRNA snRNA 2 59 -4 22 0 0 0 chr1 70478760 70478782 -172185571 + AT_rich Low_complexity Low_complexity 1 22 0 2229 105 0 6 chr1 70478921 70479236 -172185117 - AluSq SINE Alu 0 313 1 829 87 7 27 chr1 70479342 70479492 -172184861 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 842 181 140 0 chr1 70479493 70479664 -172184689 - AluJo SINE Alu -32 280 86 441 36 0 0 chr1 70480237 70480292 -172184061 + (TG)n Simple_repeat Simple_repeat 2 56 0 746 209 7 156 chr1 70480829 70480975 -172183378 + MIR SINE MIR 2 80 -182 1461 176 72 0 chr1 70480975 70481237 -172183116 - AluJb SINE Alu -21 291 11 746 209 7 156 chr1 70481237 70481397 -172182956 + MIR SINE MIR 80 262 0 1869 138 0 3 chr1 70481463 70481746 -172182607 - AluJb SINE Alu -20 292 11 855 74 7 114 chr1 70481788 70481837 -172182516 + MLT1A1 LTR MaLR 10 63 -302 2460 50 3 0 chr1 70481837 70482135 -172182218 + AluY SINE Alu 1 299 -12 855 74 7 114 chr1 70482135 70482234 -172182119 + MLT1A1 LTR MaLR 63 142 -223 1518 121 0 27 chr1 70482304 70482528 -172181825 + MER30 DNA MER1_type 13 230 0 265 79 0 0 chr1 70482528 70482566 -172181787 + L1MA9 LINE L1 6231 6268 -44 1976 127 0 19 chr1 70482590 70482897 -172181456 + AluSq SINE Alu 1 301 -12 475 111 81 71 chr1 70482897 70482939 -172181414 + HY3 scRNA scRNA 1 41 -60 1965 143 0 6 chr1 70482939 70483253 -172181100 - AluSx SINE Alu 0 312 1 475 111 81 71 chr1 70483253 70483309 -172181044 + HY3 scRNA scRNA 41 100 -1 1899 141 14 0 chr1 70483321 70483618 -172180735 + AluJb SINE Alu 1 301 -11 2201 99 0 3 chr1 70483618 70483911 -172180442 + AluSx SINE Alu 1 292 -20 2286 91 0 0 chr1 70483911 70484206 -172180147 + AluY SINE Alu 1 296 -15 28 29 0 0 chr1 70484256 70484291 -172180062 + AT_rich Low_complexity Low_complexity 1 35 0 2034 117 3 25 chr1 70484659 70484975 -172179378 - AluSx SINE Alu -3 309 1 1516 176 0 11 chr1 70485104 70485382 -172178971 + AluJo SINE Alu 3 277 -35 299 102 41 0 chr1 70485382 70485431 -172178922 + Alu SINE Alu 251 301 -1 2303 90 0 3 chr1 70485431 70485767 -172178586 + AluY SINE Alu 1 335 0 810 173 127 25 chr1 70485834 70486031 -172178322 + MIR SINE MIR 10 226 -36 404 147 15 0 chr1 70486062 70486130 -172178223 - MIR SINE MIR -48 214 146 1252 203 33 4 chr1 70486204 70486445 -172177908 - AluJo SINE Alu -64 248 1 243 0 0 0 chr1 70486839 70486866 -172177487 + (T)n Simple_repeat Simple_repeat 1 27 0 1746 138 7 7 chr1 70487006 70487296 -172177057 + AluSx SINE Alu 19 308 -4 1541 185 7 20 chr1 70487598 70487895 -172176458 - AluJo SINE Alu -19 293 1 290 170 0 0 chr1 70487895 70487942 -172176411 - AluJo SINE Alu -167 135 89 920 227 76 48 chr1 70488105 70488356 -172175997 + MIR SINE MIR 2 259 -3 1994 130 3 0 chr1 70488362 70488661 -172175692 - AluSx SINE Alu -12 300 1 459 191 265 7 chr1 70488813 70488949 -172175404 + MLT1B LTR MaLR 4 174 -216 259 217 0 24 chr1 70488953 70489036 -172175317 + CT-rich Low_complexity Low_complexity 2 82 0 996 185 16 11 chr1 70489046 70489235 -172175118 + MLT1B LTR MaLR 197 386 -4 412 252 69 23 chr1 70489350 70489481 -172174872 + MIR3 SINE MIR 10 146 -62 340 277 22 66 chr1 70490148 70490285 -172174068 + MIR SINE MIR 54 184 -78 258 271 260 0 chr1 70490301 70490397 -172173956 + L2 LINE L2 3151 3271 -1 188 328 0 0 chr1 70490387 70490451 -172173902 + MIR SINE MIR 195 258 -4 * 1623 173 7 17 chr1 70490509 70490810 -172173543 - AluJo SINE Alu -14 298 1 873 302 39 22 chr1 70490810 70491189 -172173164 + MLT1K LTR MaLR 24 467 -121 279 309 90 64 chr1 70491570 70491707 -172172646 - MLT1J LTR MaLR -3 508 376 2020 116 3 0 chr1 70491707 70491991 -172172362 + AluSx SINE Alu 1 285 -27 314 44 0 22 chr1 70491991 70492036 -172172317 + (TA)n Simple_repeat Simple_repeat 2 45 0 1621 171 3 36 chr1 70492039 70492348 -172172005 + AluJb SINE Alu 1 299 -13 279 309 90 64 chr1 70492348 70492393 -172171960 - MLT1J LTR MaLR -136 375 316 704 176 8 0 chr1 70492422 70492541 -172171812 + MLT1D LTR MaLR 2 121 -384 1686 160 0 23 chr1 70492541 70492680 -172171673 + AluSp SINE Alu 1 142 -171 2089 109 10 0 chr1 70492680 70492973 -172171380 + AluSg SINE Alu 1 296 -14 1686 160 0 23 chr1 70492973 70493140 -172171213 + AluSp SINE Alu 142 300 -13 25 0 0 0 chr1 70493140 70493165 -172171188 + AT_rich Low_complexity Low_complexity 1 25 0 479 158 78 17 chr1 70493165 70493360 -172170993 + MLT1D LTR MaLR 218 502 -3 285 220 56 140 chr1 70493369 70493583 -172170770 - MLT1J LTR MaLR -206 305 110 558 268 111 13 chr1 70494563 70494798 -172169555 + L1MC4a LINE L1 5647 5904 -1904 1702 170 3 28 chr1 70494881 70495199 -172169154 - AluSx SINE Alu -2 310 1 1407 233 54 29 chr1 70495225 70495707 -172168646 - MLT1H LTR MaLR 0 549 2 1368 163 62 4 chr1 70495761 70496019 -172168334 + AluJb SINE Alu 1 273 -39 450 0 0 0 chr1 70496021 70496071 -172168282 + (CA)n Simple_repeat Simple_repeat 1 50 0 652 275 28 22 chr1 70496093 70496275 -172168078 - MIR3 SINE MIR -3 205 23 1862 64 25 0 chr1 70496403 70496639 -172167714 - L1PA7 LINE L1 0 6154 5913 250 335 79 33 chr1 70497023 70497175 -172167178 - L2 LINE L2 -8 3264 3106 196 30 61 0 chr1 70497820 70497853 -172166500 + A-rich Low_complexity Low_complexity 97 131 0 29 0 0 0 chr1 70499217 70499246 -172165107 + AT_rich Low_complexity Low_complexity 1 29 0 821 167 0 0 chr1 70499285 70499423 -172164930 - FLAM_C SINE Alu -5 138 1 219 270 90 27 chr1 70500186 70500297 -172164056 - L3b LINE CR1 -138 1445 1328 200 241 0 17 chr1 70500706 70500764 -172163589 + (TA)n Simple_repeat Simple_repeat 2 58 0 197 36 0 0 chr1 70500875 70500903 -172163450 + L2 LINE L2 3286 3313 0 1677 157 7 4 chr1 70501004 70501284 -172163069 + AluSx SINE Alu 6 286 -26 834 17 0 26 chr1 70501284 70501399 -172162954 + (GGAA)n Simple_repeat Simple_repeat 3 114 0 1322 164 34 121 chr1 70501400 70501840 -172162513 + L1MC5 LINE L1 6621 7022 -939 405 0 0 0 chr1 70501870 70501915 -172162438 + (CA)n Simple_repeat Simple_repeat 1 45 0 1877 132 0 14 chr1 70502035 70502331 -172162022 - AluSx SINE Alu -20 292 1 278 194 15 0 chr1 70502341 70502408 -172161945 + CT-rich Low_complexity Low_complexity 1 68 0 2087 111 3 13 chr1 70502457 70502772 -172161581 + AluSx SINE Alu 1 312 0 1687 159 3 13 chr1 70503030 70503331 -172161022 - AluJo SINE Alu -9 303 6 703 138 26 17 chr1 70503354 70503470 -172160883 - FLAM_A SINE Alu -4 138 22 226 120 13 107 chr1 70503562 70503637 -172160716 + (TTTTA)n Simple_repeat Simple_repeat 1 68 0 250 205 167 0 chr1 70503838 70503916 -172160437 - MER103 DNA DNA -3 163 73 606 225 17 0 chr1 70503916 70504036 -172160317 + FLAM_A SINE Alu 1 122 -11 2141 120 0 0 chr1 70504116 70504417 -172159936 + AluSx SINE Alu 1 301 -11 262 308 77 46 chr1 70506138 70506268 -172158085 + L2 LINE L2 3137 3270 -2 2175 125 0 0 chr1 70506323 70506628 -172157725 + AluSx SINE Alu 1 305 -7 294 236 36 73 chr1 70506774 70506884 -172157469 + MIR SINE MIR 119 224 -38 2315 144 15 15 chr1 70507259 70507649 -172156704 - MLT1B LTR MaLR 0 390 1 830 249 105 28 chr1 70507843 70508286 -172156067 + MLT1H1 LTR MaLR 1 554 -1 1989 85 67 7 chr1 70508369 70508651 -172155702 - AluY SINE Alu -10 301 3 2449 60 0 13 chr1 70508662 70508963 -172155390 - AluY SINE Alu -14 297 1 1956 159 0 10 chr1 70509012 70509314 -172155039 - AluJb SINE Alu -13 299 1 528 292 15 41 chr1 70509460 70509727 -172154626 - MIR SINE MIR -1 261 2 208 222 22 0 chr1 70509792 70509837 -172154516 - L2 LINE L2 -6 3266 3221 569 209 74 6 chr1 70510046 70510209 -172154144 + MER104 DNA Tc2 6 179 -1 257 347 132 39 chr1 70510417 70510691 -172153662 + L2 LINE L2 2230 2477 -837 2244 92 3 26 chr1 70510691 70510997 -172153356 + AluSp SINE Alu 1 299 -14 257 347 132 39 chr1 70510997 70511292 -172153061 + L2 LINE L2 2477 2852 -462 194 279 118 0 chr1 70511568 70511636 -172152717 + L2 LINE L2 3180 3255 -58 293 196 0 20 chr1 70511666 70511736 -172152617 - MIR3 SINE MIR -35 173 105 300 321 18 18 chr1 70513297 70513406 -172150947 - L2 LINE L2 -5 3308 3200 2473 67 0 7 chr1 70513440 70513739 -172150614 - AluSx SINE Alu -15 297 1 874 210 52 61 chr1 70513741 70514069 -172150284 - L1ME3A LINE L1 -1 6169 5845 2355 109 0 0 chr1 70514285 70514596 -172149757 + AluSq SINE Alu 1 311 -2 2383 87 3 0 chr1 70514755 70515055 -172149298 - AluSq SINE Alu -11 302 2 181 161 97 81 chr1 70515826 70515888 -172148465 - L2 LINE L2 -576 2738 2676 236 394 73 33 chr1 70516448 70516528 -172147825 - L2 LINE L2 -22 3250 3175 2199 99 0 0 chr1 70516528 70516841 -172147512 - AluSg SINE Alu 0 313 1 236 394 73 33 chr1 70516841 70517185 -172147168 - L2 LINE L2 -97 3175 2808 204 250 15 15 chr1 70517289 70517357 -172146996 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 186 261 8 15 chr1 70517361 70517491 -172146862 + (TA)n Simple_repeat Simple_repeat 2 130 0 242 184 26 40 chr1 70517498 70517574 -172146779 + L1MC4 LINE L1 6614 6688 -1354 2187 112 7 0 chr1 70517610 70517896 -172146457 - AluSg SINE Alu -22 288 1 1838 167 3 3 chr1 70517952 70518245 -172146108 - AluJb SINE Alu -19 293 1 1667 145 32 0 chr1 70518299 70518547 -172145806 + AluSx SINE Alu 41 296 -16 23 33 0 0 chr1 70518565 70518595 -172145758 + AT_rich Low_complexity Low_complexity 1 30 0 1412 139 166 15 chr1 70518597 70518856 -172145497 - AluJo SINE Alu -10 302 5 234 313 48 24 chr1 70519021 70519104 -172145249 - MIR SINE MIR -170 92 8 419 222 111 65 chr1 70519168 70519286 -172145067 + MIR SINE MIR 47 175 -87 2207 92 7 0 chr1 70519286 70519579 -172144774 + AluSx SINE Alu 1 295 -17 419 222 111 65 chr1 70519579 70519613 -172144740 + MIR SINE MIR 175 206 -56 202 372 0 26 chr1 70519773 70519851 -172144502 - L2 LINE L2 -74 3198 3123 1748 142 39 3 chr1 70519866 70520148 -172144205 + AluSx SINE Alu 1 292 -20 1944 125 6 52 chr1 70520171 70520498 -172143855 - AluSx SINE Alu 0 312 1 1026 267 47 19 chr1 70520504 70520968 -172143385 - L1MDa LINE L1 -2451 4089 3613 1961 156 12 3 chr1 70520971 70521311 -172143042 - MER7A DNA MER2_type 0 346 6 585 285 130 24 chr1 70521480 70521908 -172142445 - L1MDa LINE L1 -3217 3323 2813 1998 96 26 4 chr1 70521908 70522179 -172142174 - AluSx SINE Alu -14 298 22 585 285 130 24 chr1 70522179 70522343 -172142010 - L1MDa LINE L1 -3727 2813 2668 1684 182 0 31 chr1 70522662 70522981 -172141372 - AluJo SINE Alu -2 310 2 384 281 99 20 chr1 70522994 70523330 -172141023 - L1MDa LINE L1 -861 2040 1729 310 309 87 24 chr1 70523380 70523506 -172140847 - L1MDa LINE L1 -4913 1627 1494 294 250 0 45 chr1 70523507 70523595 -172140758 - L2 LINE L2 -33 3280 3197 1052 277 63 70 chr1 70523596 70524368 -172139985 - L1MDa LINE L1 -4928 1602 836 46 92 0 0 chr1 70524625 70524755 -172139598 + AT_rich Low_complexity Low_complexity 1 130 0 202 208 38 38 chr1 70524828 70524881 -172139472 - MER5B DNA MER1_type -116 62 10 350 312 175 15 chr1 70525005 70525342 -172139011 - L2 LINE L2 -1211 2103 1713 1770 143 9 63 chr1 70525976 70526111 -172138242 + AluJb SINE Alu 1 142 -170 2506 58 7 0 chr1 70526111 70526420 -172137933 + AluY SINE Alu 1 311 0 1770 143 9 63 chr1 70526420 70526599 -172137754 + AluJb SINE Alu 142 298 -14 255 61 0 0 chr1 70526599 70526632 -172137721 + (GGGGA)n Simple_repeat Simple_repeat 3 35 0 615 235 8 8 chr1 70526808 70526940 -172137413 - FAM SINE Alu -16 169 38 333 136 0 0 chr1 70527040 70527099 -172137254 - L1MA1 LINE L1 0 6302 6244 36 0 0 0 chr1 70527099 70527135 -172137218 + AT_rich Low_complexity Low_complexity 1 36 0 1799 138 0 4 chr1 70527135 70527396 -172136957 - AluSx SINE Alu -7 305 46 1966 108 3 93 chr1 70527409 70527604 -172136749 - AluSx SINE Alu -9 303 149 2560 58 0 3 chr1 70527604 70527914 -172136439 - AluY SINE Alu -2 309 1 1966 108 3 93 chr1 70527914 70528051 -172136302 - AluSx SINE Alu -163 149 1 1853 129 20 53 chr1 70528053 70528356 -172135997 - AluSg SINE Alu -17 293 1 947 211 0 0 chr1 70528360 70528521 -172135832 - AluJb SINE Alu -18 294 134 14327 161 34 19 chr1 70528521 70530126 -172134227 - L1MA3 LINE L1 -47 7677 6099 2395 90 0 40 chr1 70530126 70530449 -172133904 - AluSg SINE Alu 0 310 1 14327 161 34 19 chr1 70530449 70532471 -172131882 - L1MA3 LINE L1 -1625 6099 3805 2349 100 3 3 chr1 70532471 70532780 -172131573 - AluSx SINE Alu -3 309 1 14327 161 34 19 chr1 70532780 70532948 -172131405 - L1MA3 LINE L1 -3919 3805 3641 1561 97 0 10 chr1 70532950 70533157 -172131196 - AluSx SINE Alu -107 205 1 860 191 6 12 chr1 70533159 70533321 -172131032 - AluSg/x SINE Alu -67 243 83 10970 144 39 12 chr1 70533321 70536022 -172128331 - L1MA3 LINE L1 -4206 3359 16 1134 273 135 12 chr1 70536107 70536587 -172127766 - MER34 LTR ERV1 -3 539 1 2254 117 3 0 chr1 70537111 70537409 -172126944 - AluSx SINE Alu -13 299 1 185 295 0 0 chr1 70538471 70538532 -172125821 - L2 LINE L2 -221 3051 2991 2262 84 37 0 chr1 70539308 70539606 -172124747 - AluY SINE Alu -2 309 1 535 248 168 0 chr1 70539663 70539800 -172124553 + MIR SINE MIR 2 161 -101 2459 73 3 0 chr1 70539800 70540102 -172124251 - AluSg SINE Alu -7 303 1 237 232 121 30 chr1 70540170 70540269 -172124084 + MER46C DNA MER2_type 1 108 -230 2048 132 3 0 chr1 70540352 70540641 -172123712 + AluSx SINE Alu 1 290 -22 2013 141 17 26 chr1 70540752 70541099 -172123254 - MER2 DNA MER2_type 0 344 1 454 266 64 57 chr1 70541106 70541361 -172122992 - MIR SINE MIR 0 262 3 352 275 0 0 chr1 70542020 70542111 -172122242 + L2 LINE L2 3223 3313 0 2260 104 0 3 chr1 70542125 70542423 -172121930 - AluSg SINE Alu -13 297 1 1147 274 8 0 chr1 70542659 70542907 -172121446 + MIR SINE MIR 7 256 -6 2451 57 0 10 chr1 70543417 70543713 -172120640 - AluY SINE Alu -18 293 1 2241 231 35 44 chr1 70543812 70544409 -172119944 - MLT1E LTR MaLR 0 593 2 279 232 0 0 chr1 70544548 70544617 -172119736 + L1MC4 LINE L1 7974 8042 0 2376 75 10 0 chr1 70544853 70545145 -172119208 + AluSp SINE Alu 1 295 -18 1194 107 0 0 chr1 70545145 70545322 -172119031 + (TA)n Simple_repeat Simple_repeat 1 177 0 245 203 152 0 chr1 70545736 70545815 -172118538 - MIR SINE MIR -16 246 156 2219 86 0 36 chr1 70546322 70546624 -172117729 + AluSx SINE Alu 1 291 -21 185 213 0 21 chr1 70546871 70546918 -172117435 + L2 LINE L2 3219 3264 -8 404 184 0 0 chr1 70546997 70547073 -172117280 - MER94 DNA DNA 0 134 59 2396 108 0 0 chr1 70547399 70547705 -172116648 - AluSx SINE Alu -6 306 1 2501 78 0 3 chr1 70547753 70548062 -172116291 + AluSc SINE Alu 1 308 -1 1796 162 40 0 chr1 70548508 70548835 -172115518 - MER7A DNA MER2_type 0 346 9 22 35 0 0 chr1 70549501 70549530 -172114823 + AT_rich Low_complexity Low_complexity 1 29 0 414 273 33 0 chr1 70549675 70549796 -172114557 - MIR SINE MIR -38 224 100 796 316 125 32 chr1 70550184 70550592 -172113761 - L3 LINE CR1 -58 1519 1074 1459 254 99 51 chr1 70552971 70553671 -172110682 - L1ME3A LINE L1 -14 6156 5424 2046 135 0 26 chr1 70553715 70554018 -172110335 - AluSq SINE Alu -18 295 1 527 315 30 0 chr1 70554022 70554187 -172110166 + MIR SINE MIR 93 262 0 379 245 84 59 chr1 70554215 70554538 -172109815 - HAL1 LINE L1 -1090 1417 1046 233 338 0 52 chr1 70555165 70555197 -172109156 - HAL1 LINE L1 -2378 129 97 1702 172 34 3 chr1 70555197 70555493 -172108860 - AluJo SINE Alu -7 305 1 233 338 0 52 chr1 70555493 70555596 -172108757 - HAL1 LINE L1 -2410 97 1 186 103 0 0 chr1 70557128 70557157 -172107196 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 877 143 15 0 chr1 70557157 70557290 -172107063 - FAM SINE Alu -30 155 21 369 268 262 6 chr1 70557979 70558147 -172106206 - MIR SINE MIR 0 262 52 242 321 90 22 chr1 70759014 70759148 -171905205 + MIR SINE MIR 3 145 -63 609 208 223 30 chr1 70759190 70759407 -171904946 + MIR SINE MIR 5 244 -18 3862 102 26 8 chr1 70759452 70759725 -171904628 - L1MA5A LINE L1 0 6297 6030 1807 161 6 16 chr1 70759725 70760036 -171904317 + AluJo SINE Alu 1 308 -4 3862 102 26 8 chr1 70760036 70760373 -171903980 - L1MA5A LINE L1 -267 6030 5676 449 293 151 15 chr1 70760901 70761106 -171903247 + MIR SINE MIR 16 248 -14 293 263 42 21 chr1 70761119 70761214 -171903139 + MIR SINE MIR 37 133 -75 1502 287 106 20 chr1 70761214 70761493 -171902860 + MLT2F LTR ERVL 9 263 -400 3220 68 45 2 chr1 70761493 70761533 -171902820 - MLT2A1 LTR ERVL 0 444 407 207 0 0 0 chr1 70761533 70761556 -171902797 + (TA)n Simple_repeat Simple_repeat 2 24 0 3220 68 45 2 chr1 70761556 70761941 -171902412 - MLT2A1 LTR ERVL -37 407 1 1502 287 106 20 chr1 70761941 70762264 -171902089 + MLT2F LTR ERVL 263 663 0 995 283 202 5 chr1 70762492 70762933 -171901420 + L2 LINE L2 2425 2952 -362 483 260 94 22 chr1 70763205 70763386 -171900967 - MIR SINE MIR -46 216 23 1138 141 0 6 chr1 70763631 70763794 -171900559 + AluSg/x SINE Alu 130 291 -19 2660 148 40 13 chr1 70763841 70764074 -171900279 + MER31A LTR ERV1 1 226 -259 2680 143 7 2 chr1 70764074 70764500 -171899853 - MSTA LTR MaLR 0 428 1 2660 148 40 13 chr1 70764500 70764738 -171899615 + MER31A LTR ERV1 226 485 0 309 277 232 0 chr1 70765286 70765398 -171898955 - MIR SINE MIR -66 196 59 1033 179 0 0 chr1 70765398 70765566 -171898787 - FRAM SINE Alu -4 172 5 249 333 20 20 chr1 70765726 70765770 -171898583 + MIR SINE MIR 152 195 -67 2547 106 11 0 chr1 70765770 70766130 -171898223 + THE1B LTR MaLR 1 364 0 249 333 20 20 chr1 70766130 70766184 -171898169 + MIR SINE MIR 194 250 -12 668 253 73 16 chr1 70766196 70766441 -171897912 + MIR SINE MIR 4 262 0 2320 136 23 59 chr1 70766544 70766739 -171897614 + MSTB LTR MaLR 2 203 -223 1881 166 3 3 chr1 70766739 70767029 -171897324 + AluJb SINE Alu 3 292 -20 2320 136 23 59 chr1 70767029 70767274 -171897079 + MSTB LTR MaLR 203 426 0 279 232 0 0 chr1 70768190 70768246 -171896107 + L2 LINE L2 3258 3313 0 225 151 104 104 chr1 70768259 70768365 -171895988 + L1ME4a LINE L1 5965 6070 -51 1777 179 0 19 chr1 70769218 70769536 -171894817 - AluJo SINE Alu 0 312 1 409 117 0 0 chr1 70769618 70769678 -171894675 + AluS SINE Alu 1 60 -248 5975 88 43 3 chr1 70770678 70771363 -171892990 + L1PA13 LINE L1 4309 4965 -1198 2320 78 3 43 chr1 70771363 70771685 -171892668 + AluY SINE Alu 1 309 -2 5975 88 43 3 chr1 70771685 70772816 -171891537 + L1PA13 LINE L1 4965 6163 0 26 30 0 0 chr1 70772989 70773022 -171891331 + AT_rich Low_complexity Low_complexity 1 33 0 23 24 0 24 chr1 70773136 70773160 -171891193 + AT_rich Low_complexity Low_complexity 1 25 -15 201 44 22 44 chr1 70773160 70773205 -171891148 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 23 24 0 24 chr1 70773205 70773221 -171891132 + AT_rich Low_complexity Low_complexity 25 40 0 848 331 60 19 chr1 70773308 70773470 -171890883 - L2 LINE L2 0 3313 3159 2209 118 0 0 chr1 70773470 70773766 -171890587 + AluSq SINE Alu 1 296 -17 848 331 60 19 chr1 70773766 70773972 -171890381 - L2 LINE L2 -154 3159 2930 23 0 0 0 chr1 70774547 70774570 -171889783 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 70775228 70775253 -171889100 + AT_rich Low_complexity Low_complexity 1 25 0 761 236 113 10 chr1 70776308 70776511 -171887842 - MIR SINE MIR -1 261 38 840 200 10 41 chr1 70776680 70776875 -171887478 - AluJo SINE Alu -123 189 1 907 234 34 10 chr1 70776901 70777192 -171887161 + L1ME1 LINE L1 4260 4557 -1589 723 247 72 0 chr1 70777209 70777432 -171886921 + L1ME1 LINE L1 4799 5037 -1109 3331 218 36 12 chr1 70777445 70778301 -171886052 + L1ME1 LINE L1 5296 6334 0 2449 74 0 0 chr1 70778306 70778604 -171885749 + AluY SINE Alu 1 298 -13 360 0 0 0 chr1 70778818 70778858 -171885495 + (ATG)n Simple_repeat Simple_repeat 2 41 0 388 330 64 12 chr1 70778908 70779081 -171885272 + MIR SINE MIR 21 202 -60 191 294 94 12 chr1 70779183 70779268 -171885085 - MIR SINE MIR -150 112 21 759 255 46 77 chr1 70779377 70779726 -171884627 + MER102b DNA MER1_type 1 338 -3 252 0 0 0 chr1 70781444 70781472 -171882881 + (A)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr1 70781627 70781652 -171882701 + AT_rich Low_complexity Low_complexity 1 25 0 364 333 28 0 chr1 70782493 70782631 -171881722 - MIR SINE MIR -49 213 68 350 257 27 0 chr1 70782700 70782774 -171881579 + MER81 DNA DNA 3 78 -36 2368 90 0 3 chr1 70782964 70783264 -171881089 - AluSx SINE Alu -13 299 1 306 313 20 48 chr1 70783582 70783729 -171880624 - MIR SINE MIR -46 216 74 434 293 32 16 chr1 70783768 70783891 -171880462 - L2 LINE L2 -1 3271 3147 448 264 117 55 chr1 70783907 70784327 -171880026 + MLT1J1 LTR MaLR 1 446 0 642 113 274 0 chr1 70784434 70784558 -171879795 - MLT1D LTR MaLR 0 505 348 1347 184 34 0 chr1 70784567 70784801 -171879552 - MLT1D LTR MaLR -260 245 4 2700 104 3 0 chr1 70784801 70785175 -171879178 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr1 70785373 70785399 -171878954 + AT_rich Low_complexity Low_complexity 1 26 0 240 331 189 0 chr1 70785479 70785606 -171878747 - MIR SINE MIR -110 152 2 195 364 52 40 chr1 70785862 70786112 -171878241 + L2 LINE L2 2848 3100 -172 283 278 9 70 chr1 70786139 70786254 -171878099 - L2 LINE L2 -7 3265 3158 1702 198 0 10 chr1 70786762 70787070 -171877283 + AluJb SINE Alu 1 305 -7 261 286 95 19 chr1 70787153 70787258 -171877095 - MIR SINE MIR -72 136 24 1076 242 124 10 chr1 70787273 70787579 -171876774 - LTR16C LTR ERVL 0 491 151 261 289 262 18 chr1 70787736 70787961 -171876392 - L3 LINE CR1 -155 1422 1143 190 305 42 32 chr1 70788064 70788159 -171876194 + MIR SINE MIR 148 243 -19 229 316 60 8 chr1 70788194 70788311 -171876042 - L3 LINE CR1 -442 1135 1013 186 271 21 0 chr1 70788323 70788371 -171875982 - MIR SINE MIR -106 102 54 894 78 17 0 chr1 70788379 70788548 -171875805 - AluSx SINE Alu 0 334 164 749 118 9 0 chr1 70788559 70788669 -171875684 - AluSx SINE Alu -202 111 1 409 241 0 0 chr1 70788940 70789027 -171875326 - MIR SINE MIR -14 248 162 22 0 0 0 chr1 70789601 70789623 -171874730 + AT_rich Low_complexity Low_complexity 1 22 0 206 75 0 50 chr1 70790045 70790085 -171874268 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 2290 95 0 0 chr1 70790610 70790905 -171873448 - AluSx SINE Alu -17 295 1 4683 100 63 13 chr1 70791769 70792541 -171871812 + L1MA2 LINE L1 5493 6303 -1 240 232 94 72 chr1 70792642 70792780 -171871573 - L1ME LINE L1 -304 5817 5677 2361 94 3 0 chr1 70793273 70793582 -171870771 + AluSp SINE Alu 2 311 -2 2087 104 0 34 chr1 70793582 70793880 -171870473 - AluSx SINE Alu -19 293 6 2711 123 19 61 chr1 70794705 70795226 -171869127 - L1MA6 LINE L1 -1 6299 5801 410 158 167 61 chr1 70796654 70796768 -171867585 - L1MA9 LINE L1 0 6312 6187 27 49 0 0 chr1 70798922 70798963 -171865390 + AT_rich Low_complexity Low_complexity 1 41 0 223 270 0 32 chr1 70799110 70799173 -171865180 - L2 LINE L2 0 3272 3212 356 150 67 0 chr1 70799276 70799336 -171865017 - L2 LINE L2 0 3313 3250 535 292 68 41 chr1 70799343 70799562 -171864791 + MIR SINE MIR 12 236 -26 229 361 152 6 chr1 70799646 70799804 -171864549 - L2 LINE L2 -560 2754 2574 2047 133 6 19 chr1 70800205 70800521 -171863832 - AluSx SINE Alu 0 312 1 345 140 53 0 chr1 70800554 70800611 -171863742 - U7 snRNA snRNA -3 60 1 2284 95 7 3 chr1 70802286 70802591 -171861762 - AluSg SINE Alu -4 306 1 299 289 81 64 chr1 70803385 70803558 -171860795 + MIR3 SINE MIR 27 202 -6 26 0 0 0 chr1 70803587 70803613 -171860740 + AT_rich Low_complexity Low_complexity 1 26 0 2479 72 0 3 chr1 70803921 70804227 -171860126 + AluSx SINE Alu 1 305 -7 192 395 46 28 chr1 70804341 70804450 -171859903 + MIR SINE MIR 34 144 -64 205 225 12 62 chr1 70804716 70804796 -171859557 + A-rich Low_complexity Low_complexity 3 78 0 376 271 79 59 chr1 70804824 70805027 -171859326 + L1ME LINE L1 5255 5461 -2347 426 281 126 20 chr1 70805161 70805407 -171858946 + L1ME LINE L1 5525 5796 -325 2232 98 10 0 chr1 70805407 70805703 -171858650 - AluSq SINE Alu -14 299 1 4899 171 29 24 chr1 70805774 70807260 -171857093 - L1MB3 LINE L1 -10 6173 4675 2147 125 3 3 chr1 70807798 70808110 -171856243 - AluSx SINE Alu 0 312 1 2314 86 0 0 chr1 70808261 70808551 -171855802 - AluSg SINE Alu -20 290 1 2300 116 0 0 chr1 70808747 70809057 -171855296 - AluSg SINE Alu 0 310 1 220 288 85 0 chr1 70809195 70809254 -171855099 - L2 LINE L2 -11 3302 3239 1893 81 104 0 chr1 70809318 70809577 -171854776 - AluSp SINE Alu -23 290 5 2266 87 0 10 chr1 70810210 70810508 -171853845 - AluSx SINE Alu -17 295 1 853 265 29 38 chr1 70811084 70811397 -171852956 - L2 LINE L2 0 3313 3004 1633 249 110 22 chr1 70811398 70811889 -171852464 - MLT1H LTR MaLR 0 549 16 548 267 86 19 chr1 70811963 70812173 -171852180 - L2 LINE L2 -337 2977 2754 552 151 72 0 chr1 70812304 70812443 -171851910 - L1MCa LINE L1 -5011 1930 1782 * 816 206 41 23 chr1 70812434 70812652 -171851701 - L1MCa LINE L1 -6150 273 52 388 228 50 20 chr1 70812663 70812764 -171851589 - L2 LINE L2 -564 2750 2647 21 21 0 64 chr1 70813692 70813739 -171850614 + AT_rich Low_complexity Low_complexity 1 44 0 1366 253 140 7 chr1 70814490 70814898 -171849455 - L2 LINE L2 -639 2675 2214 530 252 13 13 chr1 70814903 70815054 -171849299 - L1MCc LINE L1 -6176 247 97 2246 103 0 3 chr1 70815151 70815443 -171848910 + AluSc SINE Alu 1 291 -18 37 39 0 0 chr1 70815814 70815865 -171848488 + AT_rich Low_complexity Low_complexity 1 51 0 981 210 0 0 chr1 70815914 70816081 -171848272 + FAM SINE Alu 1 167 -8 2259 72 7 0 chr1 70817176 70817477 -171846876 - AluSc SINE Alu 0 303 1 1358 201 72 4 chr1 70817671 70817963 -171846390 - AluJo SINE Alu 0 310 1 2186 132 3 0 chr1 70818169 70818480 -171845873 - AluSx SINE Alu 0 312 1 25 0 0 0 chr1 70818716 70818741 -171845612 + AT_rich Low_complexity Low_complexity 1 25 0 2293 129 30 46 chr1 70819479 70819578 -171844775 + L1MA8 LINE L1 5837 5936 -355 1639 160 23 40 chr1 70819578 70819878 -171844475 - AluJo SINE Alu -17 295 1 2293 129 30 46 chr1 70819878 70820213 -171844140 + L1MA8 LINE L1 5936 6264 -27 2380 51 0 51 chr1 70820581 70820894 -171843459 + AluY SINE Alu 1 297 -14 533 238 122 11 chr1 70822180 70822361 -171841992 - MIR SINE MIR -10 252 52 542 95 0 0 chr1 70822594 70822695 -171841658 - AluY SINE Alu 0 308 208 940 126 87 24 chr1 70822695 70822741 -171841612 - L1MC2 LINE L1 -12 6332 6290 741 192 23 0 chr1 70822741 70822871 -171841482 + FLAM_C SINE Alu 1 133 0 2110 134 0 0 chr1 70822880 70823172 -171841181 + AluSx SINE Alu 21 312 0 940 126 87 24 chr1 70823172 70823321 -171841032 - L1MC2 LINE L1 -61 6283 6114 1185 158 11 5 chr1 70823342 70823532 -171840821 - AluJb SINE Alu -51 261 71 517 90 13 13 chr1 70823532 70823610 -171840743 - L1MC2 LINE L1 -212 6132 6055 * 1039 152 34 15 chr1 70823589 70823793 -171840560 - L1M4 LINE L1 -1214 4932 4725 2413 69 10 0 chr1 70823801 70824092 -171840261 - AluY SINE Alu -17 294 1 2296 87 3 19 chr1 70824353 70824662 -171839691 - AluSx SINE Alu -8 304 1 22 99 0 0 chr1 70825448 70825519 -171838834 + AT_rich Low_complexity Low_complexity 1 71 0 290 278 0 0 chr1 70826116 70826188 -171838165 + MIR SINE MIR 190 261 -1 417 20 0 0 chr1 70826286 70826336 -171838017 + (TA)n Simple_repeat Simple_repeat 1 50 0 1382 122 4 52 chr1 70826340 70826569 -171837784 - AluJo SINE Alu -14 298 81 25 31 0 0 chr1 70827074 70827106 -171837247 + AT_rich Low_complexity Low_complexity 1 32 0 234 103 77 0 chr1 70827210 70827249 -171837104 - MER110A LTR ERV1 -4 464 423 5952 87 45 3 chr1 70828219 70828905 -171835448 + L1PA13 LINE L1 4309 4965 -1198 2262 84 3 43 chr1 70828905 70829227 -171835126 + AluY SINE Alu 1 309 -2 5952 87 45 3 chr1 70829227 70830357 -171833996 + L1PA13 LINE L1 4965 6163 0 26 30 0 0 chr1 70830530 70830563 -171833790 + AT_rich Low_complexity Low_complexity 1 33 0 23 24 0 24 chr1 70830677 70830701 -171833652 + AT_rich Low_complexity Low_complexity 1 25 -15 201 44 22 44 chr1 70830701 70830746 -171833607 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 23 24 0 24 chr1 70830746 70830762 -171833591 + AT_rich Low_complexity Low_complexity 25 40 0 848 331 60 19 chr1 70830849 70831011 -171833342 - L2 LINE L2 0 3313 3159 2209 118 0 0 chr1 70831011 70831307 -171833046 + AluSq SINE Alu 1 296 -17 848 331 60 19 chr1 70831307 70831513 -171832840 - L2 LINE L2 -154 3159 2930 23 0 0 0 chr1 70832088 70832111 -171832242 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 70832769 70832794 -171831559 + AT_rich Low_complexity Low_complexity 1 25 0 761 236 113 10 chr1 70833849 70834052 -171830301 - MIR SINE MIR -1 261 38 372 293 102 95 chr1 70834151 70834445 -171829908 + L2 LINE L2 2965 3260 -12 360 272 31 115 chr1 70835109 70835232 -171829121 + MIR SINE MIR 30 133 -129 2477 69 13 0 chr1 70835232 70835536 -171828817 + AluSq SINE Alu 1 308 -5 360 272 31 115 chr1 70835536 70835603 -171828750 + MIR SINE MIR 133 204 -58 23 0 0 0 chr1 70836504 70836527 -171827826 + AT_rich Low_complexity Low_complexity 1 23 0 1961 88 34 25 chr1 70836584 70836941 -171827412 - LTR7 LTR ERV1 -46 404 1 2532 68 47 21 chr1 70836941 70837321 -171827032 - HERVH LTR ERV1 0 7713 7324 1389 129 14 0 chr1 70837321 70837538 -171826815 - HERVH LTR ERV1 -1894 5819 5600 4758 120 7 4 chr1 70837539 70838417 -171825936 - HERVH LTR ERV1 -2564 5149 4221 1999 146 2 4 chr1 70838415 70838740 -171825613 - HERVH LTR ERV1 -3104 5522 3993 * 22 56 0 0 chr1 70838841 70838877 -171825476 + AT_rich Low_complexity Low_complexity 1 36 0 1589 186 10 14 chr1 70839436 70839727 -171824626 - AluJo SINE Alu -22 290 1 2189 113 10 0 chr1 70840039 70840348 -171824005 + AluSq SINE Alu 1 312 -1 2186 77 0 51 chr1 70840380 70840691 -171823662 + AluSx SINE Alu 3 297 -15 1999 114 32 0 chr1 70840708 70840989 -171823364 + AluSg SINE Alu 1 290 -20 335 157 82 127 chr1 70841117 70841251 -171823102 - Tigger8 DNA MER2_type -151 515 388 30 27 0 0 chr1 70841783 70841820 -171822533 + AT_rich Low_complexity Low_complexity 1 37 0 337 381 22 8 chr1 70842124 70842258 -171822095 - L2 LINE L2 -10 3262 3127 2475 54 7 0 chr1 70842287 70842581 -171821772 - AluY SINE Alu -15 296 1 372 358 22 8 chr1 70842595 70842729 -171821624 - L2 LINE L2 -10 3262 3127 6712 204 48 76 chr1 70842943 70845128 -171819225 - L1MD2 LINE L1 -227 6132 3888 530 195 186 0 chr1 70845128 70845246 -171819107 + FLAM_A SINE Alu 1 140 -2 6712 204 48 76 chr1 70845246 70845464 -171818889 - L1MD2 LINE L1 -2471 3888 3665 14232 118 66 62 chr1 70845464 70846450 -171817903 + Tigger2 DNA MER2_type 1 982 -1736 2150 108 10 10 chr1 70846450 70846745 -171817608 - AluSx SINE Alu -17 295 1 14232 118 66 62 chr1 70846745 70848114 -171816239 + Tigger2 DNA MER2_type 982 2369 -349 1968 150 14 0 chr1 70848114 70848407 -171815946 + AluJo SINE Alu 1 297 -15 14232 118 66 62 chr1 70848407 70848759 -171815594 + Tigger2 DNA MER2_type 2369 2718 0 6712 204 48 76 chr1 70848759 70849440 -171814913 - L1MD2 LINE L1 -2694 3665 3012 2364 80 58 19 chr1 70850187 70850548 -171813805 - THE1C LTR MaLR 0 375 1 1966 204 87 13 chr1 70850551 70851021 -171813332 - MLT1D LTR MaLR 0 505 1 1460 108 44 8 chr1 70852164 70852413 -171811940 + L1MB3 LINE L1 5923 6180 -3 490 344 53 69 chr1 70852494 70852843 -171811510 + L2 LINE L2 2844 3186 -86 2425 80 0 0 chr1 70852843 70853145 -171811208 - AluY SINE Alu -9 302 1 490 344 53 69 chr1 70853145 70853231 -171811122 + L2 LINE L2 3186 3272 0 2095 134 7 0 chr1 70853289 70853594 -171810759 + AluSx SINE Alu 1 307 -5 292 259 0 0 chr1 70853881 70853939 -171810414 + MLT1E1 LTR MaLR 77 134 -520 392 185 0 0 chr1 70853968 70854033 -171810320 + MLT1E2 LTR MaLR 357 421 -205 1925 153 116 5 chr1 70854037 70854417 -171809936 - MER95 LTR ERV -9 422 1 272 190 121 0 chr1 70854417 70854475 -171809878 + MLT1E3 LTR MaLR 420 484 -142 609 105 193 0 chr1 70854556 70854670 -171809683 + MER95 LTR ERV 161 296 -135 518 148 10 30 chr1 70854727 70854820 -171809533 + MLT1E3 LTR MaLR 526 618 -6 1503 138 17 0 chr1 70854820 70855052 -171809301 + MER46A DNA MER2_type 1 236 0 305 222 16 0 chr1 70855059 70855122 -171809231 - MLT1E LTR MaLR -521 72 9 377 221 0 32 chr1 70855169 70855264 -171809089 + MLT1H LTR MaLR 458 549 0 198 193 181 12 chr1 70855391 70855474 -171808879 - MIR SINE MIR -12 250 154 213 322 67 11 chr1 70855515 70855605 -171808748 + MIR SINE MIR 79 173 -89 180 233 47 0 chr1 70855898 70855941 -171808412 - L2 LINE L2 -16 3297 3253 332 270 72 0 chr1 70856082 70856193 -171808160 - MIR SINE MIR -70 192 74 310 286 83 15 chr1 70856538 70856671 -171807682 + MIR SINE MIR 20 161 -101 2404 46 0 61 chr1 70858500 70858826 -171805527 + AluY SINE Alu 1 306 -5 513 260 105 20 chr1 70859015 70859212 -171805141 - MIR SINE MIR -17 245 34 237 83 0 0 chr1 70859480 70859516 -171804837 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 633 301 104 14 chr1 70859686 70860031 -171804322 + L2 LINE L2 1697 2072 -1242 2371 97 7 0 chr1 70860059 70860397 -171803956 - AluSx SINE Alu 0 340 1 194 303 219 17 chr1 70860496 70860734 -171803619 + L2 LINE L2 3016 3301 -12 281 303 126 76 chr1 70860810 70861087 -171803266 - L2 LINE L2 0 3272 2982 226 320 60 30 chr1 70861161 70861261 -171803092 + MIR SINE MIR 110 212 -50 426 298 0 0 chr1 70861408 70861512 -171802841 - MLT1K LTR MaLR -1 587 484 1577 164 72 102 chr1 70861749 70861825 -171802528 - Charlie4a DNA MER1_type -1469 492 415 1753 154 0 31 chr1 70861825 70862118 -171802235 - AluJb SINE Alu -27 285 2 1577 164 72 102 chr1 70862118 70862398 -171801955 - Charlie4a DNA MER1_type -1546 415 152 240 111 0 0 chr1 70862398 70862434 -171801919 + (TAG)n Simple_repeat Simple_repeat 3 38 0 1577 164 72 102 chr1 70862434 70862564 -171801789 - Charlie4a DNA MER1_type -1809 152 20 266 275 14 0 chr1 70862655 70862724 -171801629 - tRNA-Lys-AAG tRNA tRNA -6 70 1 2226 96 0 7 chr1 70863013 70863304 -171801049 - AluSc SINE Alu -20 289 1 1332 163 9 9 chr1 70863404 70863652 -171800701 + AluJb SINE Alu 58 305 0 772 284 149 3 chr1 70864266 70864594 -171799759 - L2 LINE L2 -4 3309 2934 270 258 43 21 chr1 70864804 70864897 -171799456 - MER34 LTR ERV1 -2 540 446 946 297 93 17 chr1 70868068 70868489 -171795864 - MLT1J LTR MaLR -20 491 39 387 0 0 0 chr1 70868758 70868801 -171795552 + (TG)n Simple_repeat Simple_repeat 2 44 0 1749 169 27 7 chr1 70869416 70869712 -171794641 - AluJo SINE Alu -10 302 1 923 281 106 32 chr1 70870141 70870603 -171793750 - MLT1J LTR MaLR -7 504 9 183 246 115 0 chr1 70870712 70870773 -171793580 - MIR3 SINE MIR -28 180 113 1109 174 22 22 chr1 70870800 70871024 -171793329 - L1MB8 LINE L1 -11 6167 5944 1795 265 38 25 chr1 70871494 70872023 -171792330 + MARNA DNA Mariner 28 563 -23 297 268 48 95 chr1 70872636 70872804 -171791549 + MIR SINE MIR 89 248 -14 425 300 80 7 chr1 70873206 70873356 -171790997 - L2 LINE L2 -5 3267 3107 1606 167 43 138 chr1 70873368 70873787 -171790566 + MER47B DNA MER2_type 1 379 -39 267 299 91 46 chr1 70873838 70874035 -171790318 + MIR SINE MIR 2 207 -55 306 276 92 31 chr1 70874297 70874426 -171789927 + MIR SINE MIR 17 153 -55 330 304 154 51 chr1 70874885 70875178 -171789175 - L2 LINE L2 -15 3257 2935 2281 87 0 3 chr1 70875463 70875749 -171788604 + AluSc SINE Alu 1 285 -24 2361 84 0 17 chr1 70875810 70876109 -171788244 + AluSq SINE Alu 1 294 -19 219 304 108 20 chr1 70876816 70876918 -171787435 - L2 LINE L2 -1 3271 3161 198 0 0 0 chr1 70877100 70877122 -171787231 + (T)n Simple_repeat Simple_repeat 1 22 0 1555 198 73 29 chr1 70877133 70877543 -171786810 - MLT1C LTR MaLR -6 461 34 507 332 47 10 chr1 70877757 70877950 -171786403 + MIR SINE MIR 6 205 -57 445 253 163 34 chr1 70877957 70878135 -171786218 - MIR SINE MIR -41 221 21 189 268 0 0 chr1 70878407 70878448 -171785905 + MIR SINE MIR 7 47 -215 536 282 58 17 chr1 70878544 70878718 -171785635 + MIR SINE MIR 54 234 -28 373 250 144 38 chr1 70878743 70878875 -171785478 - MIR SINE MIR -92 170 25 340 244 96 37 chr1 70879100 70879235 -171785118 - MIR SINE MIR -10 252 110 1782 75 9 0 chr1 70879391 70879619 -171784734 - AluSg/x SINE Alu 0 312 83 204 257 71 0 chr1 70879707 70879777 -171784576 - MER91C DNA MER1_type -34 106 32 244 196 36 0 chr1 70880070 70880126 -171784227 - MER116 DNA Mariner -6 74 17 483 275 21 52 chr1 70880798 70880991 -171783362 - MIR SINE MIR -8 254 68 1568 103 33 110 chr1 70881300 70881600 -171782753 + AluSx SINE Alu 35 311 -1 830 261 26 34 chr1 70881855 70882119 -171782234 - MIR SINE MIR 0 262 1 260 358 98 15 chr1 70883360 70883564 -171780789 + L2 LINE L2 2633 2853 -461 235 240 170 20 chr1 70883746 70883846 -171780507 - MIR SINE MIR -45 217 103 313 318 156 31 chr1 70883869 70884061 -171780292 - MIR SINE MIR -27 235 20 181 354 71 0 chr1 70884965 70885064 -171779289 + L2 LINE L2 3192 3297 -16 2028 124 0 0 chr1 70885898 70886165 -171778188 - AluSx SINE Alu -45 267 1 2138 159 5 19 chr1 70890043 70890421 -171773932 - L1MB4 LINE L1 -11 6169 5797 2675 177 23 48 chr1 70890554 70891114 -171773239 - L1MB2 LINE L1 -3 6168 5623 339 286 31 10 chr1 70894084 70894182 -171770171 + MIR SINE MIR 30 129 -79 701 279 76 0 chr1 70894216 70894413 -171769940 - MIR SINE MIR -4 258 47 355 276 79 8 chr1 70895195 70895322 -171769031 + MIR SINE MIR 57 192 -70 311 296 35 9 chr1 70896309 70896424 -171767929 - L3 LINE CR1 -193 1384 1267 2089 111 0 39 chr1 70896571 70896877 -171767476 + AluSg SINE Alu 1 294 -16 206 349 66 37 chr1 70896941 70897182 -171767171 - L2 LINE L2 -183 3089 2842 272 299 47 76 chr1 70897185 70897396 -171766957 - L3 LINE CR1 -357 1220 1016 1872 121 3 101 chr1 70897504 70897679 -171766674 - AluSp SINE Alu -8 305 177 567 74 0 0 chr1 70897679 70897760 -171766593 + (TG)n Simple_repeat Simple_repeat 2 82 0 1872 121 3 101 chr1 70897760 70897922 -171766431 - AluSp SINE Alu -136 177 1 234 288 59 46 chr1 70897983 70898084 -171766269 + MIR SINE MIR 56 161 -101 1246 205 31 16 chr1 70898084 70898338 -171766015 - MIR SINE MIR -1 261 4 234 288 59 46 chr1 70898338 70898389 -171765964 + MIR SINE MIR 161 210 -52 321 263 83 45 chr1 70900423 70900579 -171763774 + L2 LINE L2 3080 3241 -31 819 259 60 5 chr1 70901013 70901229 -171763124 - MIR SINE MIR 0 262 35 310 264 83 25 chr1 70901395 70901516 -171762837 - MIR SINE MIR -117 145 18 265 250 129 9 chr1 70902003 70902119 -171762234 + MIR3 SINE MIR 14 143 -65 343 255 47 9 chr1 70904197 70904303 -171760050 - MER103 DNA DNA -8 158 49 1134 289 83 18 chr1 70904519 70905011 -171759342 - L3 LINE CR1 -266 1311 788 441 328 0 0 chr1 70905592 70905708 -171758645 + L2 LINE L2 3153 3268 -4 290 298 24 0 chr1 70906706 70906790 -171757563 - L2 LINE L2 0 3272 3187 216 258 121 40 chr1 70907088 70907212 -171757141 + L2 LINE L2 3132 3265 -7 234 273 110 32 chr1 70907642 70907796 -171756557 - L2 LINE L2 -222 3050 2885 408 293 77 20 chr1 70908530 70908695 -171755658 - MIR3 SINE MIR -67 141 9 247 322 87 26 chr1 70908686 70908801 -171755552 - MIR SINE MIR -139 123 2 * 183 235 0 0 chr1 70909209 70909260 -171755093 + A-rich Low_complexity Low_complexity 1 51 0 209 271 63 134 chr1 70909658 70909957 -171754396 - L2 LINE L2 -1 3271 2994 414 291 37 68 chr1 70910381 70910763 -171753590 - L1ME LINE L1 -487 5634 5265 2346 85 3 0 chr1 70910801 70911094 -171753259 + AluSq SINE Alu 1 294 -19 447 19 0 0 chr1 70911097 70911149 -171753204 + (TA)n Simple_repeat Simple_repeat 1 52 0 208 180 20 0 chr1 70911341 70911391 -171752962 + (TA)n Simple_repeat Simple_repeat 1 51 0 354 291 63 27 chr1 70911406 70911629 -171752724 - L1ME LINE L1 -1120 5026 4796 2146 110 190 14 chr1 70911930 70912294 -171752059 - MSTA LTR MaLR 0 428 1 313 228 195 16 chr1 70912796 70912919 -171751434 + MIR SINE MIR 49 193 -69 196 257 162 0 chr1 70913070 70913144 -171751209 - L2 LINE L2 -1 3312 3227 296 319 0 0 chr1 70913371 70913462 -171750891 + MIR3 SINE MIR 108 198 -10 251 382 22 29 chr1 70914075 70914211 -171750142 - MIR SINE MIR -69 139 5 25 31 0 0 chr1 70914736 70914768 -171749585 + AT_rich Low_complexity Low_complexity 1 32 0 983 115 25 19 chr1 70914768 70914925 -171749428 + L1PA10 LINE L1 6011 6168 0 24 0 0 0 chr1 70918465 70918489 -171745864 + AT_rich Low_complexity Low_complexity 1 24 0 686 160 17 8 chr1 70918489 70918597 -171745756 + AluJb SINE Alu 176 287 -25 198 0 0 0 chr1 70918597 70918619 -171745734 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 478 219 98 24 chr1 70918629 70918793 -171745560 - MIR SINE MIR -14 248 73 1808 170 0 35 chr1 70918808 70919120 -171745233 - AluJb SINE Alu -11 301 1 245 182 14 203 chr1 70919491 70919595 -171744758 - MER103 DNA DNA 0 166 96 2083 147 13 0 chr1 70919595 70919909 -171744444 + 7SLRNA srpRNA srpRNA 3 320 0 245 182 14 203 chr1 70919909 70919952 -171744401 - MER103 DNA DNA -70 96 47 5211 137 26 35 chr1 70919963 70920412 -171743941 + L1MA9 LINE L1 5335 5786 -526 324 0 0 0 chr1 70920412 70920448 -171743905 + (TG)n Simple_repeat Simple_repeat 2 37 0 5211 137 26 35 chr1 70920448 70920953 -171743400 + L1MA9 LINE L1 5786 6281 -31 590 296 56 5 chr1 70921065 70921281 -171743072 + MIR SINE MIR 7 233 -29 1050 218 31 0 chr1 70921336 70921561 -171742792 - L1MB2 LINE L1 -26 6145 5914 376 245 102 0 chr1 70922082 70922180 -171742173 + MIR3 SINE MIR 53 160 -48 21 0 0 0 chr1 70922186 70922207 -171742146 + AT_rich Low_complexity Low_complexity 1 21 0 2440 81 3 0 chr1 70922311 70922609 -171741744 + AluSp SINE Alu 1 299 -14 2410 103 22 30 chr1 70922615 70922982 -171741371 - THE1B LTR MaLR 0 364 1 313 315 97 29 chr1 70923034 70923374 -171740979 - L2 LINE L2 -686 2628 2266 321 281 166 23 chr1 70924597 70924814 -171739539 + MIR SINE MIR 3 250 -12 200 222 0 0 chr1 70925083 70925119 -171739234 + (ATG)n Simple_repeat Simple_repeat 3 38 0 477 193 233 7 chr1 70925166 70925316 -171739037 - MIR SINE MIR -46 216 33 326 304 32 8 chr1 70925738 70925863 -171738490 - MIR SINE MIR -85 177 50 579 318 20 64 chr1 70927067 70927363 -171736990 + L2 LINE L2 2990 3272 0 184 250 100 38 chr1 70928214 70928294 -171736059 - MIR SINE MIR -95 167 83 751 192 7 40 chr1 70928373 70928524 -171735829 - MLT1G1 LTR MaLR -15 575 430 2181 151 22 6 chr1 70928524 70928881 -171735472 - MLT1A1 LTR MaLR 0 365 3 7293 206 62 59 chr1 70928889 70930352 -171734001 - MLT1A1-int LTR MaLR -7 1728 271 4916 99 10 14 chr1 70930352 70931046 -171733307 - LTR8 LTR ERV1 0 691 1 7293 206 62 59 chr1 70931046 70931120 -171733233 - MLT1A1-int LTR MaLR -1464 271 199 2219 100 7 23 chr1 70931120 70931419 -171732934 - AluSp SINE Alu -19 294 1 7293 206 62 59 chr1 70931419 70931603 -171732750 - MLT1A1-int LTR MaLR -1536 199 1 1750 180 45 20 chr1 70931604 70931910 -171732443 - MLT1A1 LTR MaLR 0 365 47 2425 104 0 0 chr1 70931910 70932217 -171732136 - AluSq SINE Alu -6 307 1 1750 180 45 20 chr1 70932217 70932266 -171732087 - MLT1A1 LTR MaLR -318 47 1 1134 237 91 43 chr1 70932281 70932698 -171731655 - MLT1G1 LTR MaLR -156 439 3 263 266 0 0 chr1 70932701 70932765 -171731588 - L1MB7 LINE L1 -234 5950 5887 531 199 83 0 chr1 70932824 70932958 -171731395 - MIR SINE MIR -62 146 39 242 149 21 0 chr1 70933041 70933088 -171731265 - L2 LINE L2 -4 3309 3262 1343 291 54 57 chr1 70934260 70934729 -171729624 - L1MEd LINE L1 -5417 702 234 2360 101 0 3 chr1 70934729 70935037 -171729316 - AluSp SINE Alu -2 311 5 1343 291 54 57 chr1 70935037 70935233 -171729120 - L1MEd LINE L1 -5885 234 39 456 276 68 64 chr1 70935537 70935787 -171728566 + MLT1K LTR MaLR 126 376 -212 860 159 93 7 chr1 70935869 70936020 -171728333 - FRAM SINE Alu -13 163 1 1725 127 0 60 chr1 70936033 70936316 -171728037 - AluSq SINE Alu -17 296 31 3414 134 23 55 chr1 70936328 70936948 -171727405 - LTR9 LTR ERV1 -12 600 1 253 200 0 0 chr1 70936948 70936982 -171727371 - AluSq SINE Alu -268 34 1 2460 88 0 0 chr1 70937198 70937506 -171726847 - AluSg1 SINE Alu 0 309 2 468 247 6 123 chr1 70937759 70937837 -171726516 + L2 LINE L2 3118 3167 -105 1927 155 17 0 chr1 70937837 70938128 -171726225 - AluJb SINE Alu -16 296 1 468 247 6 123 chr1 70938128 70938219 -171726134 + L2 LINE L2 3167 3267 -5 388 279 149 24 chr1 70938871 70939079 -171725274 + MIR SINE MIR 23 256 -6 204 231 0 0 chr1 70939740 70939779 -171724574 + CT-rich Low_complexity Low_complexity 1 39 0 600 301 53 15 chr1 70939845 70940051 -171724302 - MIR SINE MIR -2 260 47 353 306 28 7 chr1 70940317 70940461 -171723892 - MER103 DNA DNA -7 159 13 403 250 11 0 chr1 70940522 70940614 -171723739 + MER5A DNA MER1_type 9 101 -88 382 232 45 102 chr1 70941042 70941057 -171723296 - LTR33A LTR ERVL -356 167 153 1853 99 0 4 chr1 70941057 70941299 -171723054 - AluSx SINE Alu -71 241 1 382 232 45 102 chr1 70941299 70941460 -171722893 - LTR33A LTR ERVL -370 153 1 378 0 0 0 chr1 70942180 70942222 -171722131 + (CCTG)n Simple_repeat Simple_repeat 2 43 0 330 243 88 113 chr1 70942259 70942498 -171721855 - L2 LINE L2 -60 3212 2980 1948 121 10 23 chr1 70942509 70942814 -171721539 + AluSx SINE Alu 1 301 -11 180 0 0 0 chr1 70942823 70942843 -171721510 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 656 152 184 13 chr1 70942843 70943001 -171721352 + MER53 DNA DNA 1 185 -4 224 235 13 111 chr1 70943416 70943569 -171720784 - MIR3 SINE MIR -65 143 6 2433 146 33 21 chr1 70943571 70943996 -171720357 + MSTB1 LTR MaLR 3 432 0 453 84 0 158 chr1 70944336 70944431 -171719922 - MADE1 DNA Mariner 0 80 1 2456 166 37 20 chr1 70944544 70945001 -171719352 + MLT1C LTR MaLR 3 467 0 575 304 78 0 chr1 70945012 70945242 -171719111 + L2 LINE L2 2119 2366 -948 1740 238 104 4 chr1 70945278 70945696 -171718657 + MLT2B1 LTR ERVL 1 376 -178 234 0 0 0 chr1 70945696 70945722 -171718631 + (TC)n Simple_repeat Simple_repeat 2 27 0 531 45 0 0 chr1 70945723 70945789 -171718564 + (TG)n Simple_repeat Simple_repeat 2 67 0 1740 238 104 4 chr1 70945789 70945820 -171718533 + MLT2B1 LTR ERVL 375 554 0 612 315 96 58 chr1 70945823 70946272 -171718081 + L2 LINE L2 2393 2823 -490 1901 151 3 0 chr1 70946272 70946556 -171717797 - AluSx SINE Alu -19 293 9 612 315 96 58 chr1 70946556 70946962 -171717391 + L2 LINE L2 2823 3310 -3 2266 97 9 34 chr1 70947177 70947497 -171716856 - AluSx SINE Alu 0 312 1 876 256 87 36 chr1 70947558 70947867 -171716486 + LTR16C LTR ERVL 152 476 -15 245 354 80 0 chr1 70948171 70948284 -171716069 + MIR3 SINE MIR 82 203 -5 694 206 0 22 chr1 70948354 70948490 -171715863 + MER69 DNA AcHobo 1 133 -1093 2388 95 0 0 chr1 70948530 70948826 -171715527 - AluSp SINE Alu -17 296 1 2415 104 0 0 chr1 70948846 70949155 -171715198 - AluSg SINE Alu -1 309 1 470 269 103 0 chr1 70949598 70949754 -171714599 - MIR SINE MIR -26 236 65 855 68 8 26 chr1 70949766 70949883 -171714470 - AluSg/x SINE Alu -18 292 178 2191 107 4 0 chr1 70950022 70950401 -171713952 - AluSx SINE Alu 0 380 1 594 203 0 0 chr1 70950463 70950606 -171713747 + (TCCA)n Simple_repeat Simple_repeat 4 146 0 780 157 18 0 chr1 70950631 70950797 -171713556 + (TCCA)n Simple_repeat Simple_repeat 2 170 0 1253 149 25 51 chr1 70951040 70951275 -171713078 + AluJo SINE Alu 1 229 -83 364 216 117 12 chr1 70951289 70951416 -171712937 + MIR SINE MIR 27 161 -65 1023 303 14 23 chr1 70952772 70953184 -171711169 - LTR16C LTR ERVL -11 480 34 285 229 14 0 chr1 70953207 70953277 -171711076 + L2 LINE L2 3202 3272 0 207 194 32 32 chr1 70953394 70953456 -171710897 - MIR SINE MIR -29 233 172 269 291 12 0 chr1 70953520 70953606 -171710747 - MIR SINE MIR -95 167 81 296 194 108 21 chr1 70953654 70953747 -171710606 - MER5A DNA MER1_type -80 109 9 243 170 0 0 chr1 70953949 70953996 -171710357 + CT-rich Low_complexity Low_complexity 3 49 0 306 301 0 44 chr1 70954074 70954187 -171710166 - LTR67 LTR ERVL -22 535 428 1045 63 0 0 chr1 70954206 70954333 -171710020 - MLT2A2 LTR ERVL 0 453 327 209 184 0 0 chr1 70954850 70954888 -171709465 + CT-rich Low_complexity Low_complexity 3 40 0 845 95 0 0 chr1 70955508 70955613 -171708740 + AluSq/x SINE Alu 1 105 -208 189 0 0 0 chr1 70955630 70955651 -171708702 + (A)n Simple_repeat Simple_repeat 1 21 0 188 287 130 28 chr1 70955696 70955804 -171708549 + L2 LINE L2 3154 3272 0 2220 119 0 3 chr1 70955869 70956171 -171708182 + AluSx SINE Alu 1 301 -11 297 165 25 13 chr1 70956595 70956674 -171707679 + GA-rich Low_complexity Low_complexity 2 81 0 225 355 0 0 chr1 70958199 70958275 -171706078 - MIR SINE MIR -31 231 156 7611 171 32 20 chr1 70958319 70959280 -171705073 - L1MA3 LINE L1 -1 6304 5356 1851 163 3 7 chr1 70959280 70959581 -171704772 - AluJb SINE Alu -12 300 1 7611 171 32 20 chr1 70959581 70960001 -171704352 - L1MA3 LINE L1 -949 5356 4942 2089 116 0 7 chr1 70960001 70960307 -171704046 - AluSx SINE Alu 0 304 1 7611 171 32 20 chr1 70960307 70961982 -171702371 - L1MA3 LINE L1 -1363 4942 3144 2494 80 0 0 chr1 70961982 70962282 -171702071 - AluSc SINE Alu -9 300 1 7611 171 32 20 chr1 70962282 70962355 -171701998 - L1MA3 LINE L1 -3161 3144 3073 958 126 12 6 chr1 70962387 70962554 -171701799 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 1154 163 0 41 chr1 70962554 70962750 -171701603 - AluJb SINE Alu -34 278 91 1174 63 0 0 chr1 70962750 70962893 -171701460 - MLT2A2 LTR ERVL -310 143 1 662 140 96 7 chr1 70962893 70963029 -171701324 + L1M1 LINE L1 3137 3284 -4281 832 181 0 0 chr1 70963080 70963207 -171701146 + FLAM_C SINE Alu 1 127 -16 928 141 19 18 chr1 70963208 70963373 -171700980 - MLT2A2 LTR ERVL -144 309 152 15293 132 42 5 chr1 70963373 70965675 -171698678 - L1M1 LINE L1 -5134 2431 45 3273 140 48 0 chr1 70965713 70966234 -171698119 + Tigger1 DNA MER2_type 307 852 -1566 334 256 6 12 chr1 70966236 70966404 -171697949 + GA-rich Low_complexity Low_complexity 1 167 0 1680 157 3 7 chr1 70966492 70966798 -171697555 + L1 LINE L1 4410 4714 -1432 715 271 21 16 chr1 70967898 70968086 -171696267 - MIR SINE MIR -72 190 2 1271 216 99 110 chr1 70968725 70968930 -171695423 + MLT1H LTR MaLR 7 213 -336 2076 106 14 3 chr1 70968930 70969213 -171695140 - AluSg1 SINE Alu -23 286 1 1271 216 99 110 chr1 70969213 70969543 -171694810 + MLT1H LTR MaLR 213 536 -13 518 253 134 0 chr1 70969955 70970141 -171694212 + MIR SINE MIR 46 256 -6 224 237 129 32 chr1 70970824 70970917 -171693436 - MIR SINE MIR -1 261 160 25 0 0 0 chr1 70971241 70971266 -171693087 + AT_rich Low_complexity Low_complexity 1 25 0 231 342 42 13 chr1 70972220 70972457 -171691896 - L2 LINE L2 -1257 2057 1814 852 120 21 14 chr1 70972507 70972649 -171691704 + MLT1A1 LTR MaLR 15 157 -208 1211 130 0 6 chr1 70972649 70972826 -171691527 + AluSg/x SINE Alu 137 312 0 1097 149 103 5 chr1 70972827 70973022 -171691331 + MLT1A1 LTR MaLR 152 365 0 1408 286 41 10 chr1 70973573 70973961 -171690392 - MLT1J2 LTR MaLR 0 450 51 424 307 98 33 chr1 70975345 70975560 -171688793 + MIR SINE MIR 18 246 -16 2085 144 3 0 chr1 70976361 70976667 -171687686 - AluSx SINE Alu -5 307 1 489 275 197 23 chr1 70976674 70977070 -171687283 + L2 LINE L2 2827 3291 -22 516 237 9 16 chr1 70977130 70977267 -171687086 - MIR SINE MIR -64 144 32 296 304 29 0 chr1 70977766 70977868 -171686485 + MIR SINE MIR 17 121 -87 717 97 15 1 chr1 70977906 70978032 -171686321 + L1MA2 LINE L1 6018 6154 -150 415 225 11 0 chr1 70978086 70978175 -171686178 - MIR SINE MIR -71 137 48 961 123 0 0 chr1 70978180 70978318 -171686035 + L1MA2 LINE L1 6167 6304 0 22 35 0 0 chr1 70978318 70978347 -171686006 + AT_rich Low_complexity Low_complexity 1 29 0 291 259 94 97 chr1 70979018 70979211 -171685142 - L2 LINE L2 -338 2976 2783 2339 82 0 50 chr1 70979211 70979529 -171684824 + AluSx SINE Alu 1 302 -10 291 259 94 97 chr1 70979529 70979675 -171684678 - L2 LINE L2 -531 2783 2638 299 268 87 56 chr1 70980712 70980865 -171683488 - MIR SINE MIR -62 146 30 273 315 43 0 chr1 70981057 70981149 -171683204 + L2 LINE L2 3201 3296 -17 309 218 26 13 chr1 70981352 70981430 -171682923 + MER103 DNA DNA 3 81 -85 1012 252 78 3 chr1 70981855 70982137 -171682216 + LTR16A LTR ERVL 148 450 0 1618 290 93 19 chr1 70982137 70983019 -171681334 + HERV16 LTR ERVL 1 996 -4000 290 330 29 0 chr1 70983343 70983446 -171680907 + HERV16 LTR ERVL 1361 1466 -3530 539 329 38 5 chr1 70983594 70983807 -171680546 + ERVL LTR ERVL 4747 4966 -798 480 341 27 24 chr1 70983838 70984131 -171680222 + ERVL LTR ERVL 5034 5327 -437 1129 303 24 25 chr1 70984308 70984749 -171679604 + LTR16A LTR ERVL 6 437 -13 401 263 61 116 chr1 70984786 70985182 -171679171 + L1ME LINE L1 1427 1945 -4662 632 281 0 0 chr1 70985620 70985759 -171678594 + FLAM_A SINE Alu 2 140 -2 776 118 11 48 chr1 70985776 70985942 -171678411 + (GAAA)n Simple_repeat Simple_repeat 1 161 -19 2171 105 3 30 chr1 70985942 70986247 -171678106 + AluSc SINE Alu 8 304 -5 776 118 11 48 chr1 70986247 70986267 -171678086 + (GAAA)n Simple_repeat Simple_repeat 161 180 0 732 298 77 14 chr1 70986296 70986735 -171677618 + L1ME LINE L1 2434 2900 -3526 724 279 19 37 chr1 70987420 70987689 -171676664 + L1ME LINE L1 5836 6099 -302 2394 67 0 0 chr1 70987997 70988281 -171676072 - AluSc SINE Alu -14 295 12 2257 105 3 13 chr1 70988828 70989160 -171675193 - AluSp SINE Alu 0 313 1 345 286 36 0 chr1 70990076 70990188 -171674165 + MIR SINE MIR 73 188 -74 224 292 124 9 chr1 70990340 70990453 -171673900 + L2 LINE L2 3132 3257 -15 649 260 50 51 chr1 70990580 70990960 -171673393 - MLT1I LTR MaLR -8 401 25 776 252 108 40 chr1 70991066 70991419 -171672934 - L2 LINE L2 0 3313 2937 410 328 57 49 chr1 70991439 70991683 -171672670 - L2 LINE L2 -1 3271 3026 949 248 137 38 chr1 70991742 70992101 -171672252 - MLT1H1 LTR MaLR -8 547 138 2355 89 13 0 chr1 70992101 70992403 -171671950 + AluSp SINE Alu 1 306 -7 949 248 137 38 chr1 70992403 70992467 -171671886 - MLT1H1 LTR MaLR -417 138 82 1435 146 41 0 chr1 70992468 70992589 -171671764 + AluJo SINE Alu 1 136 -176 234 0 0 0 chr1 70992589 70992615 -171671738 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1435 146 41 0 chr1 70992615 70992713 -171671640 + AluJo SINE Alu 136 229 -83 494 196 154 28 chr1 70992858 70993001 -171671352 - MER117 DNA MER1_type -34 163 3 257 297 102 23 chr1 70993943 70994071 -171670282 + MIR SINE MIR 47 184 -78 225 253 91 10 chr1 70994909 70995008 -171669345 - L2 LINE L2 -14 3258 3152 443 273 71 38 chr1 70995145 70995452 -171668901 - MLT1J1 LTR MaLR -4 442 81 826 249 60 24 chr1 70995852 70996101 -171668252 - MIR SINE MIR -3 259 2 426 274 24 96 chr1 70996147 70996355 -171667998 - MIR SINE MIR -14 248 56 222 283 0 11 chr1 70996537 70996663 -171667690 + MIR3 SINE MIR 3 164 -98 354 288 25 28 chr1 70996728 70996885 -171667468 - MIR3 SINE MIR -49 159 2 509 263 91 6 chr1 70997248 70997423 -171666930 + L3 LINE CR1 795 984 -593 3040 161 18 18 chr1 70997430 70997945 -171666408 + MLT2B2 LTR ERVL 1 515 0 907 95 14 2 chr1 70997974 70998252 -171666101 + AluSx SINE Alu 1 324 0 182 316 60 8 chr1 70998320 70998437 -171665916 + L3 LINE CR1 1013 1135 -442 181 311 262 18 chr1 70998671 70998896 -171665457 + L3 LINE CR1 1143 1422 -155 1090 245 124 10 chr1 70999053 70999359 -171664994 + LTR16C LTR ERVL 151 491 0 228 295 95 19 chr1 70999374 70999479 -171664874 + MIR SINE MIR 24 136 -72 1720 194 0 10 chr1 70999562 70999866 -171664487 - AluJb SINE Alu -11 301 1 234 278 9 70 chr1 71000374 71000489 -171663864 + L2 LINE L2 3158 3265 -7 197 331 189 0 chr1 71001022 71001149 -171663204 + MIR SINE MIR 2 152 -110 26 0 0 0 chr1 71001229 71001255 -171663098 + AT_rich Low_complexity Low_complexity 1 26 0 2749 104 3 0 chr1 71001453 71001827 -171662526 - THE1C LTR MaLR 0 375 1 1375 179 34 0 chr1 71001827 71002061 -171662292 + MLT1D LTR MaLR 4 245 -260 666 113 274 0 chr1 71002070 71002194 -171662159 + MLT1D LTR MaLR 348 505 0 474 264 117 55 chr1 71002301 71002721 -171661632 - MLT1J1 LTR MaLR 0 446 1 397 293 32 16 chr1 71002737 71002860 -171661493 + L2 LINE L2 3147 3271 -1 261 313 20 48 chr1 71002899 71003046 -171661307 + MIR SINE MIR 74 216 -46 2410 90 0 3 chr1 71003364 71003664 -171660689 + AluSx SINE Alu 1 299 -13 352 257 27 0 chr1 71003854 71003928 -171660425 - MER81 DNA DNA -36 78 3 312 331 24 0 chr1 71004008 71004135 -171660218 + MIR SINE MIR 84 213 -49 25 0 0 0 chr1 71004976 71005001 -171659352 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr1 71005156 71005184 -171659169 + (T)n Simple_repeat Simple_repeat 1 28 0 782 255 46 77 chr1 71006902 71007251 -171657102 - MER102b DNA MER1_type -3 338 1 317 341 58 6 chr1 71007547 71007720 -171656633 - MIR SINE MIR -60 202 21 360 0 0 0 chr1 71007770 71007810 -171656543 + (CAT)n Simple_repeat Simple_repeat 2 41 0 2490 74 0 0 chr1 71008024 71008322 -171656031 - AluY SINE Alu -13 298 1 633 213 12 19 chr1 71008327 71008344 -171656009 - L1MA10 LINE L1 0 6334 6318 3420 212 44 13 chr1 71008344 71009183 -171655170 - L1ME1 LINE L1 -6 6160 5296 736 247 72 0 chr1 71009196 71009419 -171654934 - L1ME1 LINE L1 -1109 5037 4799 1474 208 24 117 chr1 71009436 71009753 -171654600 - L1ME1 LINE L1 -1589 4557 4212 1562 179 10 21 chr1 71009753 71010043 -171654310 + AluJo SINE Alu 1 287 -25 369 0 0 0 chr1 71010045 71010086 -171654267 + (CA)n Simple_repeat Simple_repeat 2 42 0 1474 208 24 117 chr1 71010086 71010376 -171653977 - L1ME1 LINE L1 -1935 4211 4021 2041 138 10 0 chr1 71010376 71010667 -171653686 - AluSx SINE Alu -18 294 1 1474 208 24 117 chr1 71010667 71010771 -171653582 - L1ME1 LINE L1 -2125 4021 3909 3426 268 33 33 chr1 71010777 71012127 -171652226 - L1ME1 LINE L1 -2439 3707 2355 373 130 14 14 chr1 71012127 71012196 -171652157 - L1MA5A LINE L1 -6 6291 6223 3426 268 33 33 chr1 71012196 71012334 -171652019 - L1ME1 LINE L1 -3790 2356 2219 275 346 35 61 chr1 71012541 71012772 -171651581 - HERV16 LTR ERVL -2351 3303 3079 513 284 20 34 chr1 71013073 71013221 -171651132 - HERV16 LTR ERVL -3569 1427 1282 1503 267 102 32 chr1 71013264 71013375 -171650978 - HAL1 LINE L1 -148 2359 2257 225 0 0 0 chr1 71013375 71013400 -171650953 + (CCA)n Simple_repeat Simple_repeat 1 25 0 1503 267 102 32 chr1 71013400 71013935 -171650418 - HAL1 LINE L1 -250 2257 1668 957 221 104 14 chr1 71013938 71014160 -171650193 + MLT1D LTR MaLR 29 270 -235 414 227 128 28 chr1 71014166 71014307 -171650046 + LTR41 LTR ERVL 25 179 -594 2200 114 0 19 chr1 71014453 71014770 -171649583 + AluSx SINE Alu 2 312 0 344 123 37 99 chr1 71015209 71015290 -171649063 + LTR41 LTR ERVL 691 766 -7 3222 219 25 53 chr1 71015299 71016225 -171648128 - L1ME1 LINE L1 -63 6103 5153 1727 75 4 0 chr1 71016225 71016452 -171647901 - L1PA8 LINE L1 -3 6169 5942 3222 219 25 53 chr1 71016452 71016510 -171647843 - L1ME1 LINE L1 -1013 5153 5095 555 56 0 0 chr1 71016510 71016581 -171647772 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 3222 219 25 53 chr1 71016581 71016594 -171647759 - L1ME1 LINE L1 -1071 5095 5083 1578 168 0 4 chr1 71016594 71016838 -171647515 - AluJb SINE Alu -69 243 1 3222 219 25 53 chr1 71016838 71016946 -171647407 - L1ME1 LINE L1 -1083 5083 5024 747 186 0 8 chr1 71017242 71017366 -171646987 - FLAM_A SINE Alu -10 123 1 231 306 45 77 chr1 71017369 71017567 -171646786 - MIR SINE MIR -36 226 34 2202 100 0 27 chr1 71017567 71017866 -171646487 - AluSg SINE Alu -19 291 1 231 306 45 77 chr1 71017866 71017889 -171646464 - MIR SINE MIR -228 34 12 823 247 82 4 chr1 71017891 71018134 -171646219 - MIR SINE MIR 0 262 1 660 298 29 12 chr1 71018750 71018995 -171645358 - MIR SINE MIR -1 261 13 236 167 37 0 chr1 71019013 71019067 -171645286 + (TA)n Simple_repeat Simple_repeat 2 57 0 2035 134 7 7 chr1 71019127 71019425 -171644928 - AluSx SINE Alu -14 298 1 399 260 104 39 chr1 71019520 71019674 -171644679 + MIR3 SINE MIR 45 208 0 216 289 72 24 chr1 71020425 71020508 -171643845 - L2 LINE L2 -18 3254 3168 278 306 0 20 chr1 71020644 71020742 -171643611 + MIR SINE MIR 56 151 -111 201 244 47 35 chr1 71020891 71020977 -171643376 + L2 LINE L2 3161 3247 -25 194 0 39 0 chr1 71021136 71021162 -171643191 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 253 239 14 42 chr1 71021464 71021535 -171642818 - MIR SINE MIR -109 99 31 225 235 129 0 chr1 71021511 71021596 -171642757 + MIR SINE MIR 47 142 -66 * 25 31 0 0 chr1 71022229 71022261 -171642092 + GC_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 71022321 71022346 -171642007 + GC_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr1 71022504 71022538 -171641815 + GC_rich Low_complexity Low_complexity 1 34 0 213 216 0 0 chr1 71022973 71023010 -171641343 + (CGTG)n Simple_repeat Simple_repeat 1 37 0 1664 134 103 86 chr1 71024174 71024585 -171639768 - LTR2B LTR ERV1 0 490 1 195 175 0 0 chr1 71025665 71025705 -171638648 + L2 LINE L2 3273 3312 -1 219 331 0 17 chr1 71025842 71026009 -171638344 + MIR SINE MIR 1 227 -35 885 228 5 5 chr1 71026447 71026662 -171637691 - MIR SINE MIR -5 257 43 459 240 95 34 chr1 71028142 71028321 -171636032 + MIR SINE MIR 50 239 -23 524 285 75 5 chr1 71029063 71029277 -171635076 - MIR SINE MIR -14 248 20 327 255 78 0 chr1 71029438 71029540 -171634813 + MIR SINE MIR 143 252 -10 219 326 0 23 chr1 71029865 71029951 -171634402 - L2 LINE L2 0 3272 3189 346 172 50 81 chr1 71029969 71029991 -171634362 - MER112 DNA MER1_type -7 253 232 914 245 125 58 chr1 71029991 71030407 -171633946 + MLT1J1 LTR MaLR 1 444 -2 346 172 50 81 chr1 71030407 71030483 -171633870 - MER112 DNA MER1_type -28 232 158 358 273 40 0 chr1 71031239 71031338 -171633015 - MIR SINE MIR -2 260 158 589 235 13 27 chr1 71031686 71031835 -171632518 - MIR SINE MIR -114 148 2 281 254 232 17 chr1 71032425 71032602 -171631751 + MIR SINE MIR 20 234 -28 2314 85 0 10 chr1 71033305 71033633 -171630720 - AluSx SINE Alu 0 325 1 2676 45 0 3 chr1 71034064 71034380 -171629973 - AluY SINE Alu 0 315 1 542 71 0 12 chr1 71035242 71035327 -171629026 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 2228 124 10 0 chr1 71035327 71035633 -171628720 - AluSq SINE Alu -4 309 1 240 182 0 0 chr1 71036197 71036241 -171628112 - MIR SINE MIR -133 129 86 205 29 59 0 chr1 71036413 71036447 -171627906 + (TA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr1 71037482 71037504 -171626849 + (T)n Simple_repeat Simple_repeat 1 22 0 377 307 31 43 chr1 71037519 71037682 -171626671 + L2 LINE L2 3103 3263 -9 352 300 190 15 chr1 71039713 71040050 -171624303 - L2 LINE L2 -1 3312 2917 265 184 272 48 chr1 71040095 71040198 -171624155 - MIR SINE MIR -10 252 127 372 243 107 14 chr1 71040280 71040451 -171623902 + MIR SINE MIR 13 192 -63 1083 157 95 0 chr1 71041123 71041333 -171623020 + L1MA4 LINE L1 6067 6296 -4 365 207 0 37 chr1 71041350 71041432 -171622921 - L2 LINE L2 -25 3247 3169 295 198 169 14 chr1 71041982 71042085 -171622268 + MIR SINE MIR 71 182 -67 206 182 254 0 chr1 71042456 71042511 -171621842 + MIR3 SINE MIR 119 187 -21 528 282 7 7 chr1 71044000 71044142 -171620211 + MIR3 SINE MIR 16 157 -51 492 183 200 0 chr1 71044156 71044276 -171620077 + MER5A DNA MER1_type 32 175 -14 267 257 200 21 chr1 71044159 71044299 -171620054 - MER5A DNA MER1_type -23 166 2 * 200 239 0 0 chr1 71044956 71045002 -171619351 - MIR SINE MIR -1 261 216 378 312 8 8 chr1 71045039 71045164 -171619189 - MIR SINE MIR -68 140 16 276 298 33 8 chr1 71045261 71045382 -171618971 - MIR3 SINE MIR -8 200 77 580 262 43 12 chr1 71045999 71046163 -171618190 + MER45A DNA AcHobo 1 169 -9 180 273 0 0 chr1 71046449 71046493 -171617860 + MIR SINE MIR 216 259 -3 414 259 52 0 chr1 71046530 71046646 -171617707 - MIR SINE MIR -41 221 100 569 290 33 22 chr1 71046832 71047015 -171617338 + MIR SINE MIR 60 244 -18 417 296 41 41 chr1 71047478 71047647 -171616706 + L2 LINE L2 3104 3272 0 409 286 171 0 chr1 71048430 71048570 -171615783 + MER5A DNA MER1_type 19 182 -7 231 250 230 45 chr1 71048651 71048851 -171615502 + MIR SINE MIR 23 259 -3 2289 117 0 0 chr1 71049103 71049402 -171614951 - AluSx SINE Alu -13 299 1 1413 181 28 0 chr1 71050627 71050914 -171613439 - MER33 DNA MER1_type 0 324 30 2265 94 0 7 chr1 71051154 71051451 -171612902 - AluSg SINE Alu -15 295 1 1733 179 11 10 chr1 71051477 71051811 -171612542 + L1MD2 LINE L1 5615 5885 -474 1845 222 66 20 chr1 71051824 71052279 -171612074 + L1MD2 LINE L1 5866 6341 -18 22 0 0 0 chr1 71052403 71052425 -171611928 + AT_rich Low_complexity Low_complexity 1 22 0 556 53 26 0 chr1 71052435 71052511 -171611842 - L1PA7 LINE L1 -1 6153 6076 231 208 85 65 chr1 71053088 71053218 -171611135 + MIR3 SINE MIR 36 165 -48 1655 189 0 13 chr1 71053540 71053842 -171610511 + AluJo SINE Alu 1 298 -14 461 246 66 0 chr1 71053862 71053984 -171610369 - MER103 DNA DNA -33 133 4 2503 70 0 0 chr1 71054124 71054424 -171609929 - AluY SINE Alu -11 300 1 189 0 0 0 chr1 71054456 71054477 -171609876 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 215 213 0 0 chr1 71055779 71055826 -171608527 + (TAG)n Simple_repeat Simple_repeat 2 48 0 247 198 0 37 chr1 71055826 71055907 -171608446 + CT-rich Low_complexity Low_complexity 1 78 0 936 252 91 57 chr1 71055933 71056286 -171608067 + MLT1J LTR MaLR 107 471 -40 234 250 18 0 chr1 71056436 71056492 -171607861 - MLT1L LTR MaLR -354 261 205 287 348 60 48 chr1 71058217 71058533 -171605820 - L2 LINE L2 -35 3237 2918 2027 114 0 4 chr1 71059769 71060042 -171604311 - AluSg SINE Alu -12 298 27 1163 219 0 0 chr1 71060043 71060253 -171604100 + MER58A DNA MER1_type 10 219 -5 324 48 0 0 chr1 71060315 71060357 -171603996 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 671 246 40 22 chr1 71060533 71060757 -171603596 - MIR SINE MIR -4 258 31 310 212 0 30 chr1 71061160 71061226 -171603127 + L2 LINE L2 3250 3313 0 194 184 41 0 chr1 71061363 71061412 -171602941 + L2 LINE L2 3255 3305 -8 3882 102 8 0 chr1 71062169 71062681 -171601672 - MER1A DNA MER1_type 0 529 14 507 73 0 0 chr1 71063250 71063318 -171601035 + (T)n Simple_repeat Simple_repeat 1 68 0 2241 117 42 36 chr1 71064062 71064422 -171599931 + THE1B LTR MaLR 1 362 -2 309 331 158 5 chr1 71064530 71064714 -171599639 + MIR SINE MIR 50 261 -1 419 232 11 11 chr1 71064733 71064828 -171599525 - L2 LINE L2 -20 3293 3199 453 264 123 37 chr1 71065804 71065967 -171598386 - MIR SINE MIR -38 224 48 212 200 140 0 chr1 71066632 71066682 -171597671 - MIR3 SINE MIR -44 164 108 332 234 177 19 chr1 71067529 71067687 -171596666 + MIR SINE MIR 53 235 -27 236 185 0 19 chr1 71067786 71067840 -171596513 + L1P4 LINE L1 5772 5824 -339 564 279 0 20 chr1 71068586 71068733 -171595620 - MIR SINE MIR -70 192 49 519 266 8 0 chr1 71069986 71070110 -171594243 + L2 LINE L2 3189 3313 0 182 91 30 0 chr1 71070150 71070183 -171594170 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 572 300 85 52 chr1 71070435 71071011 -171593342 - L1ME4a LINE L1 -224 5897 5303 216 200 0 0 chr1 71071104 71071149 -171593204 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 1890 172 0 10 chr1 71071263 71071571 -171592782 - AluJo SINE Alu -7 305 1 2072 96 50 0 chr1 71071583 71071865 -171592488 - AluSx SINE Alu -16 296 1 1793 221 9 3 chr1 71072013 71072352 -171592001 - MER58B DNA MER1_type 0 341 1 332 246 139 51 chr1 71072623 71072771 -171591582 - L1ME4a LINE L1 -119 6002 5828 3608 192 41 8 chr1 71072771 71073506 -171590847 + L1MB7 LINE L1 5417 6175 -9 332 246 139 51 chr1 71073506 71073572 -171590781 - L1ME4a LINE L1 -293 5828 5769 4834 93 3 3 chr1 71073902 71074536 -171589817 - L1PA13 LINE L1 0 6163 5530 359 108 59 98 chr1 71074637 71074739 -171589614 - L1P4 LINE L1 -575 5599 5502 1307 78 0 0 chr1 71074757 71074924 -171589429 - L1P4 LINE L1 -637 5531 5365 949 67 0 0 chr1 71074921 71075040 -171589313 + L1PA10 LINE L1 5755 5873 -295 * 1616 148 33 3 chr1 71075040 71075345 -171589008 - L1P4 LINE L1 -755 5391 5078 285 258 214 0 chr1 71076656 71076745 -171587608 + L2 LINE L2 3190 3297 -16 610 239 254 46 chr1 71076747 71077094 -171587259 + L2 LINE L2 2845 3263 -50 424 319 40 106 chr1 71077294 71077831 -171586522 - L2 LINE L2 -85 3187 2688 1714 138 62 48 chr1 71078301 71078657 -171585696 - THE1C LTR MaLR -14 361 1 10406 133 6 45 chr1 71078657 71080299 -171584054 - THE1C-int LTR MaLR 0 1580 3 911 130 7 0 chr1 71080301 71080439 -171583914 - THE1C LTR MaLR 0 375 237 449 158 0 13 chr1 71080445 71080521 -171583832 - THE1C LTR MaLR -353 75 1 366 288 58 14 chr1 71080521 71080660 -171583693 + MIR SINE MIR 76 220 -42 223 205 0 0 chr1 71081127 71081166 -171583187 + L2 LINE L2 3213 3251 -21 278 284 52 26 chr1 71081363 71081479 -171582874 + L3 LINE CR1 1195 1313 -264 207 189 0 0 chr1 71081950 71082003 -171582350 + T-rich Low_complexity Low_complexity 1 53 0 217 155 10 144 chr1 71082150 71082247 -171582106 - L2 LINE L2 -549 2765 2682 570 307 137 0 chr1 71083100 71083305 -171581048 + MIR SINE MIR 10 242 -20 187 273 65 13 chr1 71083405 71083482 -171580871 - L2 LINE L2 -38 3234 3154 273 373 51 0 chr1 71083568 71083686 -171580667 - L2 LINE L2 0 3272 3149 360 302 19 9 chr1 71084124 71084230 -171580123 - MIR SINE MIR -151 111 5 1406 167 0 13 chr1 71085586 71085814 -171578539 + AluJb SINE Alu 64 288 -24 7213 114 55 55 chr1 71085877 71087107 -171577246 + Tigger3b DNA MER2_type 1 1231 0 441 0 0 0 chr1 71087330 71087379 -171576974 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 270 139 0 0 chr1 71087448 71087484 -171576869 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 353 229 153 56 chr1 71087525 71087774 -171576579 - L1ME4a LINE L1 -18 6103 5831 2334 90 0 7 chr1 71088258 71088558 -171575795 - AluSq SINE Alu -15 298 1 699 220 35 12 chr1 71088713 71088886 -171575467 + MIR SINE MIR 24 200 -62 388 351 81 0 chr1 71089092 71089277 -171575076 - MIR SINE MIR -55 207 8 283 233 78 78 chr1 71089279 71089395 -171574958 + L2 LINE L2 3197 3312 -1 272 353 0 0 chr1 71089689 71089774 -171574579 - L2 LINE L2 -3 3269 3185 286 310 47 99 chr1 71089790 71090069 -171574284 + L2 LINE L2 2184 2476 -838 192 40 0 0 chr1 71090069 71090094 -171574259 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 286 310 47 99 chr1 71090094 71090182 -171574171 + L2 LINE L2 2476 2531 -783 2144 196 66 18 chr1 71090182 71090621 -171573732 - LTR40b LTR ERVL -2 460 1 286 310 47 99 chr1 71090621 71090655 -171573698 + L2 LINE L2 2531 2565 -749 308 375 72 15 chr1 71091745 71092009 -171572344 + L2 LINE L2 2563 2841 -473 360 207 74 16 chr1 71092050 71092171 -171572182 + MIR SINE MIR 98 225 -37 256 358 70 59 chr1 71092298 71092485 -171571868 + L2 LINE L2 3032 3220 -52 199 310 144 48 chr1 71093705 71093892 -171570461 - MIR SINE MIR -1 261 57 315 0 0 0 chr1 71094090 71094125 -171570228 + (TG)n Simple_repeat Simple_repeat 2 36 0 238 299 41 10 chr1 71094594 71094691 -171569662 - MIR3 SINE MIR -8 200 101 273 368 14 7 chr1 71094693 71094837 -171569516 - MIR3 SINE MIR -6 202 58 26 30 0 0 chr1 71096446 71096479 -171567874 + AT_rich Low_complexity Low_complexity 1 33 0 1753 171 7 3 chr1 71097368 71097666 -171566687 + AluJb SINE Alu 1 299 -13 677 309 89 32 chr1 71098046 71098518 -171565835 - L1ME3A LINE L1 -222 5948 5450 2184 97 0 0 chr1 71098909 71099231 -171565122 - AluSc SINE Alu 0 322 1 471 247 29 47 chr1 71100256 71100426 -171563927 - L3 LINE CR1 -196 1381 1215 410 267 97 82 chr1 71101155 71101323 -171563030 - MIR SINE MIR -8 254 81 1359 149 63 5 chr1 71101323 71101545 -171562808 + MER46A DNA MER2_type 2 236 0 410 267 97 82 chr1 71101545 71101582 -171562771 - MIR SINE MIR -181 81 46 329 306 22 15 chr1 71101923 71102057 -171562296 + MIR3 SINE MIR 73 207 -1 223 158 105 18 chr1 71102628 71102685 -171561668 + L2 LINE L2 3211 3272 0 1703 176 94 19 chr1 71102718 71103037 -171561316 + MER2 DNA MER2_type 1 343 -1 2536 224 44 14 chr1 71103357 71103609 -171560744 - L1MEc LINE L1 -5126 1270 1027 2276 80 0 30 chr1 71103609 71103910 -171560443 - AluSc SINE Alu -17 292 1 2536 224 44 14 chr1 71103910 71104357 -171559996 - L1MEc LINE L1 -5369 1027 550 1308 270 43 14 chr1 71104361 71104713 -171559640 - L1MEc LINE L1 -5905 491 130 230 348 90 0 chr1 71104952 71105041 -171559312 + L2 LINE L2 3204 3300 -13 183 80 0 0 chr1 71105041 71105066 -171559287 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 269 243 40 0 chr1 71105524 71105598 -171558755 + L1MEc LINE L1 556 632 -5764 340 302 69 40 chr1 71105782 71105984 -171558369 + MIR SINE MIR 29 236 -26 432 350 80 0 chr1 71106968 71107131 -171557222 - MER91A DNA MER1_type -19 177 2 227 150 25 0 chr1 71107760 71107800 -171556553 + MIR SINE MIR 111 151 -111 564 274 104 20 chr1 71107826 71108027 -171556326 - MIR SINE MIR -36 226 9 2170 115 13 0 chr1 71108385 71108509 -171555844 + AluSg SINE Alu 1 122 -188 492 18 0 0 chr1 71108509 71108566 -171555787 + (CA)n Simple_repeat Simple_repeat 2 58 0 2170 115 13 0 chr1 71108566 71108746 -171555607 + AluSg SINE Alu 122 309 -1 260 283 0 0 chr1 71109411 71109464 -171554889 - LTR67 LTR ERVL -99 458 406 2348 103 7 3 chr1 71110060 71110370 -171553983 + AluSx SINE Alu 1 311 -1 305 236 31 63 chr1 71110720 71110847 -171553506 + MIR SINE MIR 113 235 -27 371 225 25 0 chr1 71110971 71111051 -171553302 - MIR SINE MIR -93 115 34 182 344 107 25 chr1 71111200 71111322 -171553031 - L2 LINE L2 -18 3254 3123 249 246 58 99 chr1 71111330 71111501 -171552852 + MIR3 SINE MIR 43 206 -2 873 0 0 0 chr1 71111659 71111756 -171552597 + (TATTG)n Simple_repeat Simple_repeat 3 99 0 890 263 22 30 chr1 71111957 71112189 -171552164 - MIR SINE MIR 0 262 33 186 150 0 0 chr1 71112793 71112833 -171551520 + (T)n Simple_repeat Simple_repeat 1 40 0 414 245 99 75 chr1 71113427 71113639 -171550714 + MIR SINE MIR 46 262 0 268 246 31 0 chr1 71113656 71113721 -171550632 + MIR SINE MIR 193 259 -3 285 316 42 21 chr1 71115074 71115169 -171549184 + L2 LINE L2 3140 3236 -36 190 73 49 0 chr1 71116078 71116119 -171548234 + (TTG)n Simple_repeat Simple_repeat 1 43 0 541 269 103 18 chr1 71116383 71116606 -171547747 + MIR SINE MIR 21 262 0 604 242 123 57 chr1 71118831 71119075 -171545278 + MIR SINE MIR 3 262 0 297 328 108 43 chr1 71120271 71120503 -171543850 + MIR SINE MIR 2 248 -14 470 325 73 43 chr1 71122676 71122978 -171541375 - L3 LINE CR1 -310 1267 957 780 276 52 9 chr1 71123011 71123243 -171541110 + MIR SINE MIR 21 262 0 360 268 98 24 chr1 71123299 71123422 -171540931 + MIR SINE MIR 23 154 -108 417 39 0 0 chr1 71124597 71124648 -171539705 + (TG)n Simple_repeat Simple_repeat 1 51 0 421 299 99 19 chr1 71125215 71125426 -171538927 + MIR SINE MIR 10 237 -25 435 304 37 63 chr1 71126369 71126639 -171537714 + L2 LINE L2 2616 2878 -436 188 348 11 11 chr1 71126731 71126820 -171537533 + L2 LINE L2 3132 3220 -93 201 74 0 0 chr1 71126897 71126924 -171537429 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 553 228 31 62 chr1 71127504 71127666 -171536687 - MER103 DNA DNA -1 165 9 821 262 30 4 chr1 71127961 71128191 -171536162 + MIR SINE MIR 34 260 -2 330 67 0 0 chr1 71128711 71128756 -171535597 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 313 287 43 11 chr1 71129629 71129723 -171534630 - L2 LINE L2 -2 3270 3174 506 262 99 29 chr1 71129741 71129913 -171534440 + MER117 DNA MER1_type 13 196 -1 227 335 66 28 chr1 71129989 71130171 -171534182 - L2 LINE L2 -193 3079 2891 1256 316 147 22 chr1 71130290 71131179 -171533174 + L3 LINE CR1 576 1575 -2 672 242 28 51 chr1 71132365 71132543 -171531810 - MIR3 SINE MIR -15 193 20 828 286 36 16 chr1 71132846 71133098 -171531255 + MIR SINE MIR 6 262 0 3843 117 19 10 chr1 71133751 71134273 -171530080 - MER1A DNA MER1_type 0 527 1 271 244 81 12 chr1 71134281 71134367 -171529986 + MIR3 SINE MIR 102 193 -15 575 180 72 144 chr1 71135352 71135574 -171528779 - L1ME2 LINE L1 -10 6154 5949 207 321 12 0 chr1 71135700 71135781 -171528572 + MIR SINE MIR 88 169 -93 454 260 48 20 chr1 71135823 71135969 -171528384 - MIR SINE MIR -41 221 72 1841 151 3 30 chr1 71136284 71136589 -171527764 + AluJo SINE Alu 1 297 -15 24 0 0 0 chr1 71136645 71136669 -171527684 + AT_rich Low_complexity Low_complexity 1 24 0 521 232 97 31 chr1 71136725 71136813 -171527540 - MIR SINE MIR -4 258 177 1670 233 136 36 chr1 71136813 71137306 -171527047 - MLT1F LTR MaLR 0 542 1 521 232 97 31 chr1 71137306 71137444 -171526909 - MIR SINE MIR -85 177 20 398 316 63 123 chr1 71138319 71138734 -171525619 - L2 LINE L2 0 3272 2883 257 128 0 0 chr1 71138813 71138852 -171525501 + 5S rRNA rRNA 1 39 -82 2573 174 31 39 chr1 71139449 71139962 -171524391 + MLT2B2 LTR ERVL 1 509 -6 467 311 70 52 chr1 71140036 71140306 -171524047 - L2 LINE L2 -5 3267 2993 314 232 24 80 chr1 71140481 71140606 -171523747 - MIR SINE MIR -66 142 25 416 245 123 39 chr1 71140619 71140774 -171523579 + MIR3 SINE MIR 32 199 -9 523 183 11 43 chr1 71141711 71141804 -171522549 - Tigger7 DNA MER2_type 0 2487 2398 2954 171 21 23 chr1 71141804 71142326 -171522027 - Tigger7 DNA MER2_type -211 522 2 199 346 59 15 chr1 71143947 71144083 -171520270 - L3 LINE CR1 -30 1547 1406 22 35 0 0 chr1 71144153 71144182 -171520171 + AT_rich Low_complexity Low_complexity 1 29 0 280 257 14 29 chr1 71144810 71144880 -171519473 + MIR SINE MIR 47 115 -147 291 333 0 0 chr1 71145249 71145327 -171519026 - L2 LINE L2 -9 3263 3186 192 214 0 24 chr1 71145543 71145585 -171518768 - L2 LINE L2 -9 3304 3264 459 239 80 9 chr1 71145585 71145698 -171518655 + L2 LINE L2 3188 3308 -5 753 251 74 13 chr1 71145709 71145940 -171518413 - MLT1J1 LTR MaLR -2 444 200 310 304 152 8 chr1 71146136 71146261 -171518092 + L2 LINE L2 3122 3264 -8 298 228 23 28 chr1 71146465 71146683 -171517670 + GA-rich Low_complexity Low_complexity 1 217 0 204 260 20 0 chr1 71146729 71146779 -171517574 - L2 LINE L2 -188 3084 3034 292 222 0 0 chr1 71147415 71147478 -171516875 - MIR SINE MIR -108 154 92 2240 128 0 0 chr1 71148123 71148428 -171515925 + AluSx SINE Alu 1 305 -7 196 320 27 0 chr1 71148475 71148550 -171515803 - MIR3 SINE MIR -15 193 117 794 243 41 9 chr1 71148827 71149045 -171515308 - MIR SINE MIR -1 261 37 206 236 28 28 chr1 71149767 71149839 -171514514 - L2 LINE L2 -71 3242 3171 1551 180 17 27 chr1 71150276 71150576 -171513777 - AluJb SINE Alu -15 297 1 683 271 43 79 chr1 71150711 71151153 -171513200 - MLT1J LTR MaLR -82 429 4 961 216 27 63 chr1 71151302 71151635 -171512718 - L1MC4a LINE L1 -1527 6281 5961 282 226 0 12 chr1 71151640 71151724 -171512629 + (TA)n Simple_repeat Simple_repeat 1 83 0 280 215 15 0 chr1 71151724 71151789 -171512564 - L1MC4a LINE L1 -1849 5959 5894 188 290 110 20 chr1 71151904 71152004 -171512349 - L2 LINE L2 -219 3053 2945 467 228 55 8 chr1 71152225 71152352 -171512001 - MIR3 SINE MIR -63 145 13 1758 186 45 47 chr1 71152492 71152873 -171511480 + MLT1B LTR MaLR 1 380 -10 461 263 83 0 chr1 71155273 71155429 -171508924 + MIR SINE MIR 94 262 0 309 299 88 29 chr1 71155446 71155583 -171508770 + MIR3 SINE MIR 64 208 0 395 204 23 11 chr1 71156012 71156100 -171508253 - MIR SINE MIR -56 206 118 502 195 121 40 chr1 71159120 71159269 -171505084 + MIR SINE MIR 31 191 -71 1950 147 71 37 chr1 71159286 71159612 -171504741 + MER1B DNA MER1_type 1 337 0 1660 191 0 35 chr1 71159956 71160271 -171504082 + AluJo SINE Alu 1 304 -8 551 253 30 30 chr1 71162994 71163160 -171501193 - MIR SINE MIR -63 199 34 229 330 0 40 chr1 71163741 71163841 -171500512 + MER20B DNA MER1_type 84 179 -604 338 252 152 101 chr1 71164742 71165260 -171499093 + L2 LINE L2 2709 3272 0 353 235 265 22 chr1 71166271 71166407 -171497946 - MIR SINE MIR -81 181 13 467 313 112 21 chr1 71167531 71167764 -171496589 + MIR SINE MIR 1 254 -8 353 233 0 0 chr1 71168863 71168936 -171495417 - MIR SINE MIR -11 251 179 207 239 0 0 chr1 71169014 71169060 -171495293 - L2 LINE L2 -4 3309 3264 379 286 170 7 chr1 71169180 71169327 -171495026 - MER5A DNA MER1_type 0 189 19 356 330 9 0 chr1 71169647 71169756 -171494597 + MIR SINE MIR 31 140 -68 22 0 0 0 chr1 71169855 71169877 -171494476 + AT_rich Low_complexity Low_complexity 1 22 0 395 250 30 68 chr1 71170155 71170287 -171494066 - MIR SINE MIR -48 214 88 261 287 21 11 chr1 71170664 71170758 -171493595 - MIR SINE MIR -76 186 92 307 268 52 0 chr1 71171275 71171372 -171492981 + MIR SINE MIR 91 192 -70 997 307 109 25 chr1 71171443 71171922 -171492431 + L2 LINE L2 2458 2976 -338 415 273 164 22 chr1 71172084 71172315 -171492038 + L2 LINE L2 3050 3313 0 28 61 0 0 chr1 71172317 71172366 -171491987 + AT_rich Low_complexity Low_complexity 1 49 0 291 332 57 89 chr1 71172526 71172806 -171491547 - L2 LINE L2 0 3272 3002 216 0 0 0 chr1 71172884 71172908 -171491445 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 26 chr1 71172949 71172967 -171491386 + AT_rich Low_complexity Low_complexity 1 18 -19 16038 25 3 0 chr1 71172967 71175508 -171488845 - L1PA2 LINE L1 -3 6152 3606 27 0 0 26 chr1 71175508 71175527 -171488826 + AT_rich Low_complexity Low_complexity 18 37 0 324 278 93 9 chr1 71175573 71175681 -171488672 - MIR SINE MIR -62 146 30 788 191 96 27 chr1 71176594 71176782 -171487571 + MIR SINE MIR 49 249 -13 531 263 32 92 chr1 71177279 71177496 -171486857 + L2 LINE L2 2980 3183 -89 363 238 262 20 chr1 71177668 71177870 -171486483 - MIR SINE MIR 0 262 12 1817 72 0 0 chr1 71177917 71178138 -171486215 - L1PA7 LINE L1 0 6154 5934 1946 150 0 16 chr1 71178946 71179253 -171485100 + AluSx SINE Alu 1 302 -10 503 255 104 38 chr1 71179292 71179403 -171484950 + MIR SINE MIR 4 106 -156 3226 166 12 36 chr1 71179403 71179965 -171484388 + MER44D DNA MER2_type 1 604 -1 503 255 104 38 chr1 71179965 71180065 -171484288 + MIR SINE MIR 106 229 -33 362 269 104 55 chr1 71180554 71180736 -171483617 - MIR SINE MIR -52 210 20 360 194 56 46 chr1 71181175 71181283 -171483070 + MIR SINE MIR 67 175 -87 314 163 0 0 chr1 71181403 71181452 -171482901 + L2 LINE L2 3263 3311 -2 338 322 126 17 chr1 71181563 71181737 -171482616 - MIR SINE MIR -48 214 22 672 301 12 24 chr1 71182197 71182443 -171481910 + MIR SINE MIR 19 261 -1 214 307 13 13 chr1 71184797 71184872 -171479481 + L2 LINE L2 3194 3268 -45 262 238 50 89 chr1 71185073 71185174 -171479179 + L2 LINE L2 3137 3233 -39 267 266 0 0 chr1 71185949 71186013 -171478340 + L2 LINE L2 2991 3054 -259 2096 145 36 0 chr1 71186032 71186363 -171477990 - MER2 DNA MER2_type -1 343 1 22 35 0 0 chr1 71186628 71186657 -171477696 + AT_rich Low_complexity Low_complexity 1 29 0 1579 188 13 19 chr1 71186667 71186975 -171477378 + AluJb SINE Alu 3 308 -4 676 236 93 0 chr1 71187150 71187311 -171477042 + MER5B DNA MER1_type 1 176 -2 257 323 126 24 chr1 71187560 71187687 -171476666 + MIR SINE MIR 49 188 -74 3085 226 70 54 chr1 71188141 71188399 -171475954 + L1MC4 LINE L1 6801 7053 -989 642 104 0 0 chr1 71188399 71188495 -171475858 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 3085 226 70 54 chr1 71188495 71189188 -171475165 + L1MC4 LINE L1 7053 7768 -274 664 235 54 54 chr1 71189198 71189419 -171474934 + L1MC4 LINE L1 7821 8041 -1 424 202 8 78 chr1 71189456 71189585 -171474768 + MIR SINE MIR 60 179 -83 498 206 387 0 chr1 71189849 71190004 -171474349 - MIR SINE MIR -33 229 15 211 191 29 73 chr1 71190026 71190094 -171474259 + L2 LINE L2 3205 3269 -3 262 304 25 10 chr1 71190515 71190611 -171473742 - MER91B DNA MER1_type -1 189 90 249 393 77 0 chr1 71190626 71190743 -171473610 - MER91A DNA MER1_type -43 153 28 1863 174 0 10 chr1 71190759 71191069 -171473284 + AluJb SINE Alu 1 307 -5 210 118 0 0 chr1 71191872 71191906 -171472447 + (CA)n Simple_repeat Simple_repeat 1 34 0 423 269 58 31 chr1 71192678 71192865 -171471488 + MIR SINE MIR 20 197 -41 518 219 110 43 chr1 71192866 71193030 -171471323 + MER5B DNA MER1_type 1 175 -3 309 223 72 151 chr1 71193166 71193444 -171470909 + MER112 DNA MER1_type 1 256 0 399 156 39 0 chr1 71194411 71194488 -171469865 - L1MA8 LINE L1 -30 6261 6182 281 340 115 13 chr1 71194520 71194676 -171469677 - MIR SINE MIR -71 191 20 593 275 55 46 chr1 71195894 71196112 -171468241 - MIR SINE MIR -19 243 24 397 199 15 52 chr1 71196158 71196294 -171468059 + Charlie7 DNA MER1_type 2441 2571 -41 234 281 109 0 chr1 71196442 71196506 -171467847 + L2 LINE L2 3182 3252 -20 1930 163 14 49 chr1 71196553 71196922 -171467431 + MLT1A1 LTR MaLR 10 365 0 241 326 23 0 chr1 71197423 71197509 -171466844 - MIR SINE MIR -90 172 85 357 318 17 67 chr1 71197963 71198062 -171466291 - MER5A DNA MER1_type -2 187 99 3804 128 80 2 chr1 71198062 71198650 -171465703 - MER41B LTR ERV1 -1 634 1 357 318 17 67 chr1 71198650 71198729 -171465624 - MER5A DNA MER1_type -90 99 18 358 264 213 57 chr1 71199228 71199542 -171464811 - L2 LINE L2 -11 3302 2940 315 149 0 0 chr1 71199708 71199755 -171464598 + MER69 DNA AcHobo 2480 2526 0 885 269 115 29 chr1 71199871 71200254 -171464099 - L2 LINE L2 0 3313 2898 228 254 57 49 chr1 71200531 71200653 -171463700 - L2 LINE L2 -424 2890 2768 653 271 44 20 chr1 71201133 71201238 -171463115 + MIR SINE MIR 47 148 -114 1195 171 254 22 chr1 71201238 71201513 -171462840 - MER44D DNA MER2_type 0 609 1 653 271 44 20 chr1 71201513 71201610 -171462743 + MIR SINE MIR 148 254 -8 894 253 58 12 chr1 71202189 71202446 -171461907 - MLT1J LTR MaLR -242 269 1 2035 133 62 6 chr1 71202512 71202836 -171461517 - MER2 DNA MER2_type -2 342 1 24 0 0 0 chr1 71203464 71203488 -171460865 + AT_rich Low_complexity Low_complexity 1 24 0 403 274 20 0 chr1 71204380 71204482 -171459871 + MIR SINE MIR 159 262 0 2279 119 0 3 chr1 71205682 71205993 -171458360 - AluSg SINE Alu 0 310 1 266 282 0 0 chr1 71206036 71206114 -171458239 - L1MC/D LINE L1 -1981 5827 5750 766 273 118 73 chr1 71206527 71206941 -171457412 - MLT1J LTR MaLR -38 473 36 2833 79 33 8 chr1 71206941 71207307 -171457046 - THE1C LTR MaLR 0 375 1 766 273 118 73 chr1 71207307 71207342 -171457011 - MLT1J LTR MaLR -475 36 4 266 248 87 67 chr1 71208834 71208983 -171455370 + L3 LINE CR1 1176 1327 -250 220 205 0 39 chr1 71208988 71209066 -171455287 + CT-rich Low_complexity Low_complexity 2 76 0 5268 137 9 7 chr1 71209130 71209942 -171454411 + L1MA5 LINE L1 5484 6296 -4 1624 170 7 0 chr1 71209958 71210229 -171454124 + AluJb SINE Alu 30 302 -10 195 349 118 4 chr1 71210500 71210729 -171453624 - L2 LINE L2 -213 3059 2805 1119 254 105 89 chr1 71211174 71211237 -171453116 + MLT1J LTR MaLR 1 62 -449 2300 113 0 3 chr1 71211237 71211547 -171452806 + AluSx SINE Alu 1 309 -3 1119 254 105 89 chr1 71211547 71211986 -171452367 + MLT1J LTR MaLR 62 511 0 311 294 68 55 chr1 71211992 71212138 -171452215 - MIR SINE MIR -50 212 65 182 212 0 0 chr1 71212172 71212205 -171452148 + L2 LINE L2 3235 3267 -5 262 306 8 58 chr1 71212401 71212522 -171451831 - L2 LINE L2 -4 3268 3154 646 211 117 18 chr1 71213014 71213185 -171451168 - MIR SINE MIR -52 210 23 685 231 99 47 chr1 71213811 71214023 -171450330 + MIR SINE MIR 24 246 -16 337 266 0 0 chr1 71215028 71215107 -171449246 + MIR SINE MIR 183 261 -1 766 163 0 31 chr1 71215330 71215459 -171448894 - FLAM_A SINE Alu -8 125 1 242 302 32 0 chr1 71215511 71215574 -171448779 + L2 LINE L2 3185 3249 -23 359 253 11 121 chr1 71215592 71215766 -171448587 + MIR3 SINE MIR 42 196 -12 251 305 46 33 chr1 71216088 71216239 -171448114 + L1ME4a LINE L1 5629 5781 -2027 287 163 170 44 chr1 71216310 71216445 -171447908 + L1ME4a LINE L1 5967 6118 -3 193 280 0 0 chr1 71217026 71217076 -171447277 + MIR SINE MIR 64 113 -149 * 301 323 105 8 chr1 71217064 71217197 -171447156 - L2 LINE L2 0 3272 3127 309 363 18 54 chr1 71217360 71217583 -171446770 + L2 LINE L2 2238 2452 -862 358 340 66 111 chr1 71217836 71218322 -171446031 + L2 LINE L2 2809 3272 0 805 221 102 9 chr1 71218612 71218840 -171445513 - MIR SINE MIR 0 262 17 1032 254 8 20 chr1 71219075 71219319 -171445034 + MIR SINE MIR 1 241 -21 458 287 93 0 chr1 71220150 71220327 -171444026 - MIR SINE MIR -56 206 15 184 163 0 102 chr1 71220348 71220397 -171443956 + L2 LINE L2 3180 3223 -49 698 228 67 94 chr1 71220575 71220830 -171443523 - MER102b DNA MER1_type -6 335 88 340 354 128 12 chr1 71221565 71221729 -171442624 + MER5A DNA MER1_type 3 185 -4 253 179 0 15 chr1 71221989 71222056 -171442297 - MER113 DNA MER1_type? -391 130 65 367 301 141 14 chr1 71222112 71222325 -171442028 + MIR SINE MIR 13 252 -10 824 138 24 0 chr1 71222379 71222502 -171441851 - AluSg/x SINE Alu -10 302 177 1048 171 0 11 chr1 71222566 71222741 -171441612 - FRAM SINE Alu -5 171 1 399 307 71 0 chr1 71222818 71222945 -171441408 + MIR3 SINE MIR 47 182 -26 237 361 63 58 chr1 71224109 71224300 -171440053 - MIR3 SINE MIR -11 197 6 2312 116 17 19 chr1 71224660 71224813 -171439540 - MER46B DNA MER2_type -2495 236 208 2899 92 3 16 chr1 71224813 71225193 -171439160 - THE1C LTR MaLR 0 375 1 2312 116 17 19 chr1 71225193 71225401 -171438952 - MER46B DNA MER2_type -2523 208 1 541 237 151 0 chr1 71225412 71225564 -171438789 + MIR SINE MIR 67 241 -21 329 225 62 125 chr1 71225932 71226092 -171438261 - MIR3 SINE MIR -21 187 38 438 208 146 34 chr1 71226155 71226333 -171438020 - MER110A LTR ERV1 -268 200 3 209 416 15 36 chr1 71226363 71226500 -171437853 + L2 LINE L2 3126 3259 -13 471 288 12 31 chr1 71226535 71226698 -171437655 + L1ME LINE L1 5594 5753 -417 1751 162 47 127 chr1 71226698 71227148 -171437205 - MLT2D LTR ERVL 0 414 1 988 248 119 58 chr1 71227224 71227652 -171436701 - LTR33 LTR ERVL -21 500 47 41 21 0 0 chr1 71228056 71228104 -171436249 + AT_rich Low_complexity Low_complexity 1 48 0 185 289 21 41 chr1 71228130 71228227 -171436126 - MIR3 SINE MIR -42 166 72 225 348 200 0 chr1 71229063 71229218 -171435135 - MIR SINE MIR -8 254 69 40 0 0 0 chr1 71229928 71229968 -171434385 + AT_rich Low_complexity Low_complexity 1 40 0 562 288 68 12 chr1 71229988 71230205 -171434148 - MIR SINE MIR -34 174 3 232 225 101 93 chr1 71230205 71230333 -171434020 + MIR SINE MIR 134 262 0 610 228 184 40 chr1 71230738 71230966 -171433387 + MIR SINE MIR 2 262 0 375 291 15 45 chr1 71231057 71231191 -171433162 - MIR SINE MIR -31 231 102 334 312 21 64 chr1 71231666 71231807 -171432546 + MIR SINE MIR 7 141 -121 902 111 124 0 chr1 71233374 71233527 -171430826 + MER46B DNA MER2_type 3 49 -187 819 153 0 30 chr1 71233530 71233661 -171430692 + FLAM_C SINE Alu 1 127 -16 1108 149 20 20 chr1 71233670 71233871 -171430482 + MER46B DNA MER2_type 36 236 0 230 337 11 80 chr1 71233946 71234133 -171430220 - L2 LINE L2 -52 3220 3047 1689 164 32 29 chr1 71234546 71234856 -171429497 + AluJb SINE Alu 1 311 -1 253 145 145 0 chr1 71235223 71235285 -171429068 + MIR SINE MIR 178 248 -14 432 336 28 14 chr1 71236248 71236391 -171427962 - L3 LINE CR1 -7 1570 1426 4160 134 24 29 chr1 71236401 71237103 -171427250 - L1MB3 LINE L1 -7 6176 5478 542 282 48 24 chr1 71237145 71237351 -171427002 + MIR SINE MIR 42 252 -10 660 293 16 81 chr1 71237380 71237701 -171426652 - L3 LINE CR1 -160 1417 1118 1366 196 49 0 chr1 71238897 71239020 -171425333 - AluJo SINE Alu -55 257 141 253 45 23 23 chr1 71239020 71239064 -171425289 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1366 196 49 0 chr1 71239064 71239185 -171425168 - AluJo SINE Alu -171 141 1 2204 88 3 11 chr1 71240129 71240441 -171423912 - AluSg SINE Alu 0 310 1 212 154 0 26 chr1 71240783 71240822 -171423531 + CT-rich Low_complexity Low_complexity 2 39 0 1471 268 56 33 chr1 71241547 71242155 -171422198 - L1MC4a LINE L1 -1902 5906 5285 934 78 86 0 chr1 71242251 71242379 -171421974 + MER85 DNA T2_type 1 139 0 366 263 117 15 chr1 71243506 71243643 -171420710 + MIR SINE MIR 12 162 -100 315 163 9 0 chr1 71243651 71243716 -171420637 - MLT1F LTR MaLR -18 524 472 508 169 254 0 chr1 71243804 71243934 -171420419 - MLT1H LTR MaLR -386 163 1 192 346 7 66 chr1 71243990 71244126 -171420227 - L2 LINE L2 -4 3309 3182 502 287 122 0 chr1 71245821 71245985 -171418368 - MIR SINE MIR -24 238 55 2358 122 23 14 chr1 71246707 71247059 -171417294 + THE1A LTR MaLR 1 355 0 608 239 19 58 chr1 71247432 71247637 -171416716 + L2 LINE L2 3117 3313 0 2265 187 46 13 chr1 71248944 71249530 -171414823 + L1MD2 LINE L1 5655 7951 -44 226 291 12 81 chr1 71249971 71250057 -171414296 + L2 LINE L2 3100 3179 -93 2343 79 27 0 chr1 71250067 71250359 -171413994 - AluSc SINE Alu -9 300 1 366 254 91 42 chr1 71250887 71251052 -171413301 + MIR SINE MIR 5 177 -85 186 189 0 0 chr1 71251113 71251150 -171413203 + T-rich Low_complexity Low_complexity 5 41 0 293 310 5 0 chr1 71252065 71252173 -171412180 + MIR3 SINE MIR 57 167 -41 309 279 0 0 chr1 71253239 71253318 -171411035 - MIR SINE MIR -118 144 66 193 276 0 52 chr1 71255018 71255076 -171409277 + MIR SINE MIR 21 75 -133 372 357 6 12 chr1 71255077 71255245 -171409108 + MER117 DNA MER1_type 12 178 -19 183 167 0 0 chr1 71255268 71255298 -171409055 + MIR3 SINE MIR 164 193 -15 288 0 0 0 chr1 71255313 71255345 -171409008 + (TG)n Simple_repeat Simple_repeat 2 33 0 4873 119 29 8 chr1 71255899 71256563 -171407790 - L1PA16 LINE L1 0 6166 5483 2288 95 0 10 chr1 71256563 71256867 -171407486 - AluSg SINE Alu -8 302 2 4873 119 29 8 chr1 71256867 71256959 -171407394 - L1PA16 LINE L1 -683 5483 5394 259 297 27 0 chr1 71258437 71258511 -171405842 - L2 LINE L2 -4 3268 3193 2547 108 47 8 chr1 71258569 71258930 -171405423 + THE1C LTR MaLR 1 375 0 191 306 42 14 chr1 71259165 71259237 -171405116 + L2 LINE L2 3191 3264 -8 299 149 0 0 chr1 71259271 71259318 -171405035 - L2 LINE L2 -16 3256 3210 222 359 55 8 chr1 71259731 71259859 -171404494 - L2 LINE L2 -2 3270 3137 262 282 68 65 chr1 71260540 71260877 -171403476 + L1MEd LINE L1 686 1023 -5096 686 274 28 22 chr1 71260878 71261057 -171403296 + MIR SINE MIR 6 185 -77 262 346 39 6 chr1 71261295 71261467 -171402886 + L2 LINE L2 2797 2961 -311 236 229 0 0 chr1 71262676 71262737 -171401616 + LTR66 LTR ERVL 401 461 -149 2252 148 33 19 chr1 71262872 71263231 -171401122 - THE1B LTR MaLR 0 364 1 251 318 106 0 chr1 71263794 71263926 -171400427 + MIR SINE MIR 101 246 -16 245 299 124 10 chr1 71264015 71264112 -171400241 + MIR SINE MIR 41 148 -60 1210 181 82 54 chr1 71264158 71264473 -171399880 + MER33 DNA MER1_type 1 324 0 31 26 0 0 chr1 71264657 71264695 -171399658 + AT_rich Low_complexity Low_complexity 1 38 0 1717 165 42 0 chr1 71264856 71265141 -171399212 - AluJb SINE Alu -15 297 1 221 297 164 30 chr1 71266212 71266475 -171397878 + L2 LINE L2 2851 3148 -124 225 400 0 0 chr1 71266633 71266703 -171397650 + L2 LINE L2 3155 3224 -48 190 267 67 93 chr1 71266777 71266852 -171397501 - MER5A DNA MER1_type -5 184 112 274 163 0 0 chr1 71266867 71266910 -171397443 + MER5A DNA MER1_type 147 189 0 893 202 6 33 chr1 71266916 71267099 -171397254 - MER5B DNA MER1_type 0 178 1 274 325 122 5 chr1 71267224 71267412 -171396941 + MIR SINE MIR 14 223 -39 450 268 94 0 chr1 71267565 71267703 -171396650 - MIR SINE MIR -2 260 110 1030 248 81 65 chr1 71267714 71268161 -171396192 + MLT1C LTR MaLR 10 463 -4 211 172 138 17 chr1 71268161 71268219 -171396134 - MIR SINE MIR -149 113 49 483 217 54 16 chr1 71268284 71268413 -171395940 - L2 LINE L2 -1 3312 3179 435 223 143 0 chr1 71269276 71269388 -171394965 - L2 LINE L2 0 3313 3186 559 250 138 12 chr1 71269440 71269600 -171394753 - MIR SINE MIR -72 190 11 2561 189 18 6 chr1 71269827 71270340 -171394013 + L1MB5 LINE L1 5643 6161 -13 208 322 46 11 chr1 71270508 71270595 -171393758 + MIR SINE MIR 58 147 -61 21 36 0 0 chr1 71270865 71270893 -171393460 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr1 71271467 71271491 -171392862 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 233 214 39 154 chr1 71271692 71271751 -171392602 - L1ME LINE L1 -262 5859 5795 1964 127 40 45 chr1 71271751 71272128 -171392225 + THE1C LTR MaLR 1 375 0 2377 107 0 0 chr1 71272134 71272444 -171391909 + AluSx SINE Alu 1 310 -2 233 214 39 154 chr1 71272444 71272559 -171391794 - L1ME LINE L1 -331 5790 5699 420 231 68 25 chr1 71272640 71272834 -171391519 - L1ME LINE L1 -570 5551 5358 306 286 71 109 chr1 71273161 71273270 -171391083 - L3 LINE CR1 -2 1575 1463 3290 123 16 107 chr1 71273270 71273954 -171390399 + L1PB2 LINE L1 5525 6146 -5 306 286 71 109 chr1 71273954 71274082 -171390271 - L3 LINE CR1 -114 1463 1347 421 270 61 17 chr1 71274144 71274259 -171390094 + MIR SINE MIR 28 147 -115 1961 153 47 19 chr1 71274484 71274849 -171389504 - THE1C LTR MaLR 0 375 1 182 197 115 33 chr1 71275060 71275121 -171389232 + MIR SINE MIR 157 222 -40 2224 120 7 0 chr1 71275622 71275921 -171388432 - AluSc SINE Alu -8 301 1 422 252 350 14 chr1 71276143 71276357 -171387996 - L2 LINE L2 0 3272 2987 1425 121 13 0 chr1 71276589 71276828 -171387525 - L1MA2 LINE L1 -4 6300 6059 755 114 0 0 chr1 71276829 71276934 -171387419 - U6 snRNA snRNA 0 107 3 28 0 0 0 chr1 71277029 71277057 -171387296 + AT_rich Low_complexity Low_complexity 1 28 0 309 267 61 59 chr1 71277137 71277290 -171387063 - MIR SINE MIR -21 187 27 253 338 113 13 chr1 71277328 71277386 -171386967 + L2 LINE L2 2825 2876 -396 1388 189 36 80 chr1 71277386 71277772 -171386581 - MLT1A2 LTR MaLR -1 373 5 253 338 113 13 chr1 71277772 71277944 -171386409 + L2 LINE L2 2876 3078 -194 401 349 104 0 chr1 71278121 71278313 -171386040 + L3 LINE CR1 1178 1389 -188 305 329 71 0 chr1 71278502 71278642 -171385711 + L3 LINE CR1 1424 1573 -4 222 171 0 0 chr1 71278800 71278841 -171385512 + (TG)n Simple_repeat Simple_repeat 1 41 0 1482 176 92 0 chr1 71278841 71279103 -171385250 - AluJb SINE Alu -26 286 1 198 71 0 0 chr1 71279781 71279809 -171384544 + (TG)n Simple_repeat Simple_repeat 1 28 0 2450 73 3 0 chr1 71279996 71280299 -171384054 + AluY SINE Alu 1 304 -7 220 305 61 0 chr1 71280461 71280543 -171383810 - MIR SINE MIR -88 120 34 1602 136 18 7 chr1 71280802 71281081 -171383272 + L1MB3 LINE L1 5895 6176 -7 343 209 267 0 chr1 71281289 71281375 -171382978 - MIR SINE MIR -61 147 39 295 266 0 13 chr1 71281588 71281667 -171382686 - MIR SINE MIR 0 262 185 527 263 190 6 chr1 71281696 71281875 -171382478 - MIR SINE MIR -4 258 47 21 0 0 0 chr1 71282118 71282139 -171382214 + AT_rich Low_complexity Low_complexity 1 21 0 203 254 0 30 chr1 71282462 71282529 -171381824 + CT-rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr1 71282721 71282743 -171381610 + AT_rich Low_complexity Low_complexity 1 22 0 494 238 93 70 chr1 71283989 71284161 -171380192 - MIR3 SINE MIR -14 194 19 258 32 0 0 chr1 71284178 71284209 -171380144 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 204 339 139 30 chr1 71284428 71284593 -171379760 + L2 LINE L2 3078 3260 -12 495 210 123 154 chr1 71284639 71285192 -171379161 - MLT1H1 LTR MaLR 0 555 20 290 333 26 0 chr1 71285556 71285670 -171378683 + MER20B DNA MER1_type 63 179 -604 220 283 23 127 chr1 71286489 71286662 -171377691 + L2 LINE L2 3022 3176 -96 1850 139 49 17 chr1 71288443 71288787 -171375566 - MLT1A1 LTR MaLR -7 358 4 322 253 148 24 chr1 71288995 71289205 -171375148 + MIR SINE MIR 4 231 -31 346 316 65 43 chr1 71289841 71290075 -171374278 + MIR SINE MIR 15 258 -4 614 235 8 23 chr1 71290087 71290219 -171374134 + MER5B DNA MER1_type 1 130 -48 734 212 103 0 chr1 71290245 71290410 -171373943 - MIR SINE MIR -61 201 20 275 231 22 55 chr1 71290989 71291080 -171373273 + MIR SINE MIR 61 148 -114 993 247 21 4 chr1 71291655 71291890 -171372463 + MIR SINE MIR 23 261 -1 274 272 19 48 chr1 71292198 71292301 -171372052 + MIR SINE MIR 34 133 -129 4182 181 99 30 chr1 71292301 71293480 -171370873 + Charlie1 DNA MER1_type 1440 2756 -5 522 206 29 59 chr1 71293491 71293627 -171370726 + MIR SINE MIR 23 154 -108 228 284 15 0 chr1 71293662 71293729 -171370624 + (TTA)n Simple_repeat Simple_repeat 1 68 0 288 244 47 23 chr1 71294094 71294180 -171370173 - MIR SINE MIR -72 136 49 345 279 142 9 chr1 71294702 71294923 -171369430 + MIR3 SINE MIR 4 259 -3 186 288 55 14 chr1 71295022 71295095 -171369258 + MIR SINE MIR 81 156 -106 871 219 7 68 chr1 71295214 71295492 -171368861 - MIR SINE MIR 0 262 2 234 283 106 18 chr1 71296107 71296132 -171368221 - L2 LINE L2 -8 3305 3284 924 158 147 11 chr1 71296132 71296316 -171368037 - MER3 DNA MER1_type 0 209 1 234 283 106 18 chr1 71296316 71296403 -171367950 - L2 LINE L2 -29 3284 3183 28 0 0 0 chr1 71296551 71296579 -171367774 + AT_rich Low_complexity Low_complexity 1 28 0 843 192 24 96 chr1 71296689 71296980 -171367373 + L1ME2 LINE L1 5877 6146 -18 265 238 74 25 chr1 71297223 71297345 -171367008 + HAL1b LINE L1 1214 1341 -7 373 314 92 0 chr1 71298032 71298185 -171366168 - MIR SINE MIR -87 175 9 2391 49 3 0 chr1 71299105 71299390 -171364963 + AluY SINE Alu 1 286 -25 396 0 0 0 chr1 71299393 71299437 -171364916 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1637 199 69 29 chr1 71301445 71301865 -171362488 - Zaphod DNA AcHobo -5 4026 3585 1649 189 0 7 chr1 71301865 71302189 -171362164 - AluJb SINE Alu 0 312 1 1637 199 69 29 chr1 71302189 71302220 -171362133 - Zaphod DNA AcHobo -446 3585 3557 879 177 12 12 chr1 71302222 71302386 -171361967 - AluSg/x SINE Alu -20 292 129 982 197 0 0 chr1 71302398 71302606 -171361747 - Zaphod DNA AcHobo -489 3542 3335 * 1613 274 58 17 chr1 71302595 71302662 -171361691 - Zaphod DNA AcHobo -3377 654 591 1841 213 78 7 chr1 71302662 71303098 -171361255 - MLT1C LTR MaLR 0 467 1 1613 274 58 17 chr1 71303098 71303566 -171360787 - Zaphod DNA AcHobo -3440 591 97 4160 161 58 21 chr1 71303630 71304290 -171360063 - L1MB7 LINE L1 0 6682 6048 207 0 0 0 chr1 71304290 71304313 -171360040 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4160 161 58 21 chr1 71304313 71304328 -171360025 - L1MB7 LINE L1 -634 6048 6035 2244 113 0 3 chr1 71304328 71304630 -171359723 + AluSx SINE Alu 1 301 -11 4160 161 58 21 chr1 71304630 71305336 -171359017 - L1MB7 LINE L1 -647 6035 5210 229 224 47 47 chr1 71305336 71305421 -171358932 - MLT2C1 LTR ERVL 0 520 436 * 1014 181 73 52 chr1 71305419 71305707 -171358646 - MLT2C1 LTR ERVL -102 295 2 5225 213 42 21 chr1 71305713 71307196 -171357157 - L1MB7 LINE L1 -1438 5206 3693 963 180 82 67 chr1 71307191 71307364 -171356989 - L1MB7 LINE L1 -5480 1062 882 * 2267 117 0 0 chr1 71307364 71307662 -171356691 + AluSg SINE Alu 1 298 -12 963 180 82 67 chr1 71307662 71307755 -171356598 - L1MB7 LINE L1 -5660 882 792 335 154 0 0 chr1 71307753 71307805 -171356548 + L1M4 LINE L1 833 884 -5658 * 201 133 0 0 chr1 71308035 71308065 -171356288 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 321 270 0 79 chr1 71308087 71308213 -171356140 + MIR SINE MIR 132 247 -15 349 273 50 41 chr1 71308979 71309100 -171355253 + L2 LINE L2 3148 3269 -3 450 224 199 6 chr1 71309425 71309581 -171354772 - MER5A DNA MER1_type 0 189 4 333 346 15 15 chr1 71309630 71309763 -171354590 + MIR3 SINE MIR 67 199 -9 261 57 0 0 chr1 71310229 71310264 -171354089 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2321 75 0 0 chr1 71310266 71310546 -171353807 - AluY SINE Alu -31 280 1 1452 235 25 74 chr1 71310830 71311400 -171352953 - MER34 LTR ERV1 0 542 1 30 0 0 0 chr1 71311496 71311526 -171352827 + AT_rich Low_complexity Low_complexity 1 30 0 213 108 0 0 chr1 71311543 71311580 -171352773 + (TC)n Simple_repeat Simple_repeat 1 37 0 624 236 12 30 chr1 71311660 71311825 -171352528 + MER5B DNA MER1_type 1 162 -16 1054 261 75 45 chr1 71311978 71312483 -171351870 - LTR33A LTR ERVL -1 522 3 194 240 40 0 chr1 71313080 71313130 -171351223 - MIR SINE MIR -10 252 201 237 337 54 0 chr1 71313161 71313253 -171351100 - MIR SINE MIR -162 100 4 320 206 100 44 chr1 71313316 71313476 -171350877 - MER77 LTR ERV1 -21 584 416 578 75 45 161 chr1 71314200 71314254 -171350099 - Charlie5 DNA MER1_type 0 2585 2526 2360 75 10 0 chr1 71314254 71314548 -171349805 - AluY SINE Alu -13 298 2 578 75 45 161 chr1 71314548 71314577 -171349776 - Charlie5 DNA MER1_type -59 2526 2495 665 118 0 10 chr1 71314577 71314679 -171349674 - HY3 scRNA scRNA 0 101 1 578 75 45 161 chr1 71314679 71314793 -171349560 - Charlie5 DNA MER1_type -90 2495 2410 459 204 0 0 chr1 71314793 71314896 -171349457 - L1MA9 LINE L1 -5 6307 6205 513 135 48 63 chr1 71314998 71315124 -171349229 - Charlie5 DNA MER1_type -151 2461 2338 1973 145 10 0 chr1 71315124 71315428 -171348925 + AluJb SINE Alu 1 307 -5 459 16 0 0 chr1 71315464 71315525 -171348828 + AluY SINE Alu 244 304 -6 5772 169 31 8 chr1 71315528 71315764 -171348589 - Charlie5 DNA MER1_type -279 2345 2116 2228 67 0 0 chr1 71315764 71316034 -171348319 - AluY SINE Alu -7 304 35 5772 169 31 8 chr1 71316034 71317024 -171347329 - Charlie5 DNA MER1_type -508 2116 1091 1048 155 184 46 chr1 71317049 71317397 -171346956 - Charlie5 DNA MER1_type -1644 968 573 219 167 0 0 chr1 71317573 71317615 -171346738 + (TG)n Simple_repeat Simple_repeat 1 42 0 1172 181 12 47 chr1 71317885 71318139 -171346214 - L1MB5 LINE L1 -8 6166 5922 685 93 5 19 chr1 71318173 71318291 -171346062 - L1MB5 LINE L1 -240 5928 5814 1759 158 45 14 chr1 71318385 71318676 -171345677 - AluJb SINE Alu -12 300 1 218 308 108 0 chr1 71318676 71318741 -171345612 + MIR SINE MIR 114 185 -77 848 298 80 36 chr1 71318742 71319494 -171344859 - L2 LINE L2 0 3313 2526 315 65 0 0 chr1 71319628 71319674 -171344679 + (CA)n Simple_repeat Simple_repeat 1 46 0 343 341 29 7 chr1 71320196 71320334 -171344019 + MIR SINE MIR 122 262 0 372 323 90 18 chr1 71322107 71322274 -171342079 + MLT1K LTR MaLR 4 182 -406 232 240 93 40 chr1 71322263 71322338 -171342015 + MLT1K LTR MaLR 445 523 -65 * 197 340 20 10 chr1 71322482 71322582 -171341771 - L2 LINE L2 -222 3050 2950 609 254 38 27 chr1 71322829 71323014 -171341339 + MIR SINE MIR 50 236 -26 395 219 0 31 chr1 71323015 71323111 -171341242 - MIR SINE MIR 0 262 170 336 208 84 92 chr1 71323374 71323600 -171340753 + MIR SINE MIR 35 261 -1 230 218 36 0 chr1 71323651 71323706 -171340647 - L1ME LINE L1 -213 5908 5852 433 240 94 53 chr1 71325024 71325195 -171339158 + MIR SINE MIR 72 249 -13 295 356 50 0 chr1 71325935 71326036 -171338317 - L2 LINE L2 0 3313 3208 391 216 0 63 chr1 71326147 71326258 -171338095 - MIR SINE MIR 0 262 159 197 376 40 0 chr1 71326282 71326383 -171337970 - L2 LINE L2 -222 3050 2946 278 341 75 23 chr1 71327015 71327229 -171337124 + L3 LINE CR1 1133 1357 -220 2198 103 6 32 chr1 71327527 71327838 -171336515 - AluSq SINE Alu -10 303 1 1393 171 14 0 chr1 71328249 71328465 -171335888 + MER20 DNA MER1_type 1 219 0 358 219 177 112 chr1 71329323 71329551 -171334802 + L1ME4a LINE L1 5630 5891 -230 1892 142 28 0 chr1 71329551 71329840 -171334513 + AluJo SINE Alu 1 297 -15 358 219 177 112 chr1 71329840 71329967 -171334386 + L1ME4a LINE L1 5891 6008 -113 396 214 104 46 chr1 71330109 71330282 -171334071 - L2 LINE L2 -1060 2254 2072 1062 302 23 23 chr1 71330590 71331020 -171333333 + LTR16B LTR ERVL 35 464 0 337 283 85 13 chr1 71334251 71334410 -171329943 - MIR SINE MIR -65 143 7 435 325 0 0 chr1 71334427 71334550 -171329803 - L2 LINE L2 0 3313 3191 211 265 12 72 chr1 71334682 71334765 -171329588 + L2 LINE L2 3137 3214 -58 367 236 11 11 chr1 71334935 71335024 -171329329 - MIR SINE MIR -118 144 56 268 286 24 12 chr1 71336665 71336749 -171327604 + MLT1K LTR MaLR 504 588 0 43 71 0 0 chr1 71337035 71337120 -171327233 + AT_rich Low_complexity Low_complexity 1 85 0 1878 157 0 3 chr1 71337272 71337566 -171326787 - AluJb SINE Alu -19 293 1 2173 118 37 86 chr1 71337831 71338214 -171326139 + THE1B LTR MaLR 1 364 0 345 294 107 28 chr1 71338991 71339168 -171325185 - MIR SINE MIR -56 206 16 21 0 0 0 chr1 71339231 71339252 -171325101 + AT_rich Low_complexity Low_complexity 1 21 0 235 318 0 0 chr1 71339758 71339824 -171324529 + CT-rich Low_complexity Low_complexity 5 70 0 459 148 0 0 chr1 71340149 71340237 -171324116 + (TCCC)n Simple_repeat Simple_repeat 1 88 0 377 268 42 65 chr1 71340373 71340541 -171323812 + MIR3 SINE MIR 22 185 -23 190 128 0 77 chr1 71340743 71340782 -171323571 + MIR3 SINE MIR 153 188 -20 257 276 16 29 chr1 71341703 71341819 -171322534 - MIR SINE MIR -40 168 59 480 284 178 10 chr1 71341911 71342108 -171322245 - MIR SINE MIR -28 234 5 2012 149 0 0 chr1 71342615 71342946 -171321407 - AluSx SINE Alu 0 331 1 2957 105 2 9 chr1 71343136 71343574 -171320779 + L1P LINE L1 4274 4708 -1438 5495 72 7 13 chr1 71343843 71344552 -171319801 - L1PA12 LINE L1 0 6168 5464 186 43 0 0 chr1 71344564 71344587 -171319766 + (ATG)n Simple_repeat Simple_repeat 1 23 0 1562 198 95 77 chr1 71344641 71345137 -171319216 - MLT1D LTR MaLR 0 505 1 193 93 0 47 chr1 71345165 71345208 -171319145 + (TA)n Simple_repeat Simple_repeat 2 42 0 297 328 94 0 chr1 71345260 71345388 -171318965 - MIR SINE MIR -108 154 15 246 266 9 64 chr1 71346795 71346904 -171317449 - MIR SINE MIR -79 183 81 244 154 0 0 chr1 71346965 71347004 -171317349 + L2 LINE L2 3217 3255 -17 2188 102 3 3 chr1 71347392 71347677 -171316676 + AluSg SINE Alu 1 285 -25 1732 179 3 23 chr1 71347817 71348124 -171316229 + AluJo SINE Alu 1 301 -11 985 293 121 33 chr1 71349131 71349520 -171314833 - L2 LINE L2 -1 3312 2890 994 208 42 9 chr1 71350386 71350598 -171313755 - MER20 DNA MER1_type 0 219 1 379 270 0 0 chr1 71350674 71350774 -171313579 + L3b LINE CR1 1286 1385 -198 913 19 0 0 chr1 71350789 71350894 -171313459 - L1P LINE L1 -1455 4691 4587 425 20 0 0 chr1 71350894 71350940 -171313413 + L1PA3 LINE L1 6104 6152 -3 597 288 9 46 chr1 71351447 71351497 -171312856 - MIR SINE MIR -3 259 209 1193 218 14 0 chr1 71351497 71351713 -171312640 + MER20 DNA MER1_type 1 219 0 597 288 9 46 chr1 71351713 71351881 -171312472 - MIR SINE MIR -53 209 49 22 35 0 0 chr1 71351939 71351968 -171312385 + AT_rich Low_complexity Low_complexity 1 29 0 11551 107 8 4 chr1 71352105 71354462 -171309891 - L1PA8A LINE L1 0 6131 3768 334 313 47 7 chr1 71354568 71354718 -171309635 + MIR SINE MIR 38 193 -69 822 261 42 35 chr1 71354721 71354981 -171309372 - MIR SINE MIR 0 262 1 279 0 0 0 chr1 71355681 71355712 -171308641 + (TG)n Simple_repeat Simple_repeat 2 32 0 2371 112 0 0 chr1 71355727 71356039 -171308314 + AluSx SINE Alu 1 312 0 286 306 63 18 chr1 71356472 71356583 -171307770 + MER5B DNA MER1_type 29 144 -34 * 294 272 19 19 chr1 71356578 71356693 -171307660 + MER5A DNA MER1_type 59 171 -7 252 303 0 13 chr1 71356694 71356770 -171307583 + MER5A DNA MER1_type 108 182 -7 297 259 93 74 chr1 71356909 71357088 -171307265 - MIR SINE MIR -64 198 17 1349 170 9 9 chr1 71357194 71357424 -171306929 - AluJb SINE Alu -72 240 11 224 319 44 22 chr1 71357567 71357658 -171306695 + L2 LINE L2 3015 3107 -165 373 276 41 11 chr1 71357909 71358048 -171306305 - MIR SINE MIR -23 185 46 242 344 21 11 chr1 71358063 71358156 -171306197 - MIR3 SINE MIR -112 96 3 185 178 44 22 chr1 71358290 71358335 -171306018 - MIR SINE MIR -116 146 101 180 178 178 0 chr1 71359263 71359308 -171305045 + MIR SINE MIR 90 142 -66 518 215 158 28 chr1 71359868 71360045 -171304308 - MIR SINE MIR -22 240 41 429 319 33 43 chr1 71360232 71360508 -171303845 + L2 LINE L2 2044 2316 -998 208 258 94 47 chr1 71360813 71360941 -171303412 + L2 LINE L2 3180 3313 0 267 306 48 27 chr1 71360975 71361122 -171303231 - MIR SINE MIR -50 212 63 213 121 0 0 chr1 71361400 71361433 -171302920 + (A)n Simple_repeat Simple_repeat 1 33 0 264 311 57 0 chr1 71361518 71361624 -171302729 + MIR SINE MIR 117 228 -34 182 263 20 61 chr1 71362344 71362443 -171301910 - MIR3 SINE MIR 0 208 114 989 140 7 0 chr1 71362573 71362723 -171301630 - AluJb SINE Alu -13 299 149 505 224 142 33 chr1 71362787 71362827 -171301526 + MIR SINE MIR 60 94 -168 1520 159 47 0 chr1 71362827 71362998 -171301355 - AluJo SINE Alu -9 303 115 207 0 0 0 chr1 71362998 71363021 -171301332 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1520 159 47 0 chr1 71363021 71363107 -171301246 - AluJo SINE Alu -197 115 34 505 224 142 33 chr1 71363107 71363207 -171301146 + MIR SINE MIR 94 227 -35 183 80 0 0 chr1 71363207 71363232 -171301121 + (TA)n Simple_repeat Simple_repeat 1 25 0 505 224 142 33 chr1 71363232 71363273 -171301080 + MIR SINE MIR 227 262 0 519 259 52 23 chr1 71363385 71363559 -171300794 + MIR SINE MIR 79 257 -5 261 319 0 0 chr1 71363613 71363685 -171300668 - L2 LINE L2 -1 3271 3200 183 271 0 0 chr1 71364394 71364442 -171299911 + L2 LINE L2 3017 3064 -208 270 325 119 20 chr1 71364807 71364958 -171299395 + MIR SINE MIR 47 212 -50 316 201 111 69 chr1 71365212 71365356 -171298997 - MIR SINE MIR -50 212 63 1660 181 7 14 chr1 71365524 71365812 -171298541 + AluJb SINE Alu 1 286 -26 200 345 134 46 chr1 71365917 71365952 -171298401 + MIR SINE MIR 2 33 -229 2483 73 0 19 chr1 71365952 71366267 -171298086 + AluSg SINE Alu 1 309 -1 200 345 134 46 chr1 71366267 71366425 -171297928 + MIR SINE MIR 33 212 -50 2353 102 0 0 chr1 71366964 71367267 -171297086 + AluSg SINE Alu 1 303 -7 446 308 31 19 chr1 71367348 71367507 -171296846 - MIR SINE MIR -82 180 20 1410 155 78 29 chr1 71367941 71368250 -171296103 - MER33 DNA MER1_type 0 324 1 208 205 66 66 chr1 71368263 71368385 -171295968 + L2 LINE L2 3068 3189 -124 240 35 0 0 chr1 71368423 71368452 -171295901 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 416 274 72 48 chr1 71368452 71368654 -171295699 - MLT1J LTR MaLR -52 459 253 351 0 0 0 chr1 71368666 71368705 -171295648 + (T)n Simple_repeat Simple_repeat 1 39 0 636 167 6 26 chr1 71368717 71368873 -171295480 + CT-rich Low_complexity Low_complexity 1 153 0 362 250 229 21 chr1 71368938 71369078 -171295275 - MLT1J LTR MaLR -341 170 2 304 129 16 32 chr1 71369078 71369140 -171295213 + L2 LINE L2 3180 3240 -73 424 226 40 65 chr1 71369792 71369916 -171294437 + MIR SINE MIR 34 154 -108 463 293 109 64 chr1 71369929 71370352 -171294001 + L1ME LINE L1 5312 5753 -368 23 0 0 0 chr1 71370653 71370676 -171293677 + AT_rich Low_complexity Low_complexity 1 23 0 272 319 11 11 chr1 71370728 71370822 -171293531 + CT-rich Low_complexity Low_complexity 2 95 0 386 349 79 39 chr1 71372414 71372886 -171291467 - L2 LINE L2 -211 3061 2577 587 305 46 41 chr1 71372886 71373083 -171291270 - MIR3 SINE MIR -9 199 2 285 211 92 0 chr1 71373653 71373729 -171290624 + MIR SINE MIR 91 173 -89 665 125 26 0 chr1 71373762 71373914 -171290439 + CT-rich Low_complexity Low_complexity 1 156 0 1939 147 0 51 chr1 71374533 71374847 -171289506 + AluJo SINE Alu 1 298 -14 401 306 78 39 chr1 71374971 71375151 -171289202 - L2 LINE L2 0 3313 3127 331 283 73 57 chr1 71375170 71375347 -171289006 - L2 LINE L2 -445 2869 2690 289 146 0 0 chr1 71377924 71377972 -171286381 - L1MB5 LINE L1 0 6174 6127 1771 167 0 20 chr1 71378000 71378293 -171286060 - AluJo SINE Alu -25 287 1 2243 187 17 7 chr1 71378293 71378710 -171285643 - L1MB5 LINE L1 -32 6142 5722 2046 88 0 4 chr1 71379129 71379390 -171284963 + AluSx SINE Alu 47 306 -6 498 281 31 71 chr1 71380709 71380905 -171283448 + MIR SINE MIR 55 242 -20 517 264 176 33 chr1 71381015 71381197 -171283156 + MIR SINE MIR 52 259 -3 637 210 68 74 chr1 71381206 71381343 -171283010 - MER5B DNA MER1_type -2 176 39 2084 118 0 0 chr1 71381343 71381623 -171282730 - AluSx SINE Alu -1 311 32 637 210 68 74 chr1 71381623 71381661 -171282692 - MER5B DNA MER1_type -139 39 2 188 294 0 59 chr1 71382614 71382682 -171281671 + L2 LINE L2 3206 3269 -3 249 331 30 0 chr1 71382801 71382910 -171281443 - MIR SINE MIR -69 139 38 359 297 16 55 chr1 71384323 71384451 -171279902 - L2 LINE L2 0 3272 3150 361 326 76 23 chr1 71384470 71384642 -171279711 + MIR3 SINE MIR 20 200 -8 697 141 262 0 chr1 71384867 71385016 -171279337 + MER53 DNA DNA 2 189 0 1007 80 0 0 chr1 71385152 71385277 -171279076 - AluY SINE Alu -13 298 174 2016 138 6 13 chr1 71385486 71385797 -171278556 + AluSx SINE Alu 1 309 -3 268 260 135 0 chr1 71385840 71385936 -171278417 - MER103 DNA DNA -44 122 14 264 224 17 0 chr1 71386020 71386078 -171278275 + L3 LINE CR1 1412 1470 -107 21 82 0 0 chr1 71386426 71386475 -171277878 + AT_rich Low_complexity Low_complexity 1 49 0 2899 167 31 2 chr1 71387243 71387751 -171276602 + L1MB5 LINE L1 5585 6107 -67 1311 171 69 52 chr1 71387793 71388171 -171276182 - MSTA LTR MaLR 0 364 1 198 213 200 27 chr1 71388323 71388398 -171275955 + MIR SINE MIR 175 262 0 893 154 0 22 chr1 71389843 71389979 -171274374 + FLAM_C SINE Alu 1 133 0 271 195 39 52 chr1 71390222 71390299 -171274054 - L2 LINE L2 -3 3310 3235 * 2394 249 66 21 chr1 71390274 71391020 -171273333 - L2 LINE L2 -350 2964 2186 518 291 100 21 chr1 71391123 71391364 -171272989 - MIR SINE MIR 0 262 3 574 314 96 4 chr1 71391443 71391682 -171272671 + MIR SINE MIR 2 262 0 412 293 138 21 chr1 71392376 71392592 -171271761 - MIR SINE MIR -1 261 25 281 280 0 56 chr1 71392655 71392780 -171271573 - FLAM_C SINE Alu -11 122 5 1872 117 0 32 chr1 71392829 71393137 -171271216 + AluSx SINE Alu 13 310 -2 325 302 159 33 chr1 71393249 71393431 -171270922 - MIR SINE MIR -52 210 6 367 252 141 52 chr1 71394077 71394212 -171270141 - MIR3 SINE MIR -41 167 21 1176 181 33 19 chr1 71394221 71394436 -171269917 + MER20 DNA MER1_type 1 218 -1 534 246 84 39 chr1 71394481 71394684 -171269669 - MIR SINE MIR 0 262 51 321 221 171 57 chr1 71395293 71395451 -171268902 - L2 LINE L2 0 3313 3138 204 163 23 0 chr1 71395543 71395586 -171268767 + L2 LINE L2 3266 3309 -4 198 71 0 0 chr1 71396369 71396397 -171267956 + (TC)n Simple_repeat Simple_repeat 1 28 0 416 294 50 6 chr1 71397451 71397611 -171266742 - LTR33 LTR ERVL -7 514 348 804 305 56 7 chr1 71397645 71397914 -171266439 - LTR33 LTR ERVL -235 286 5 2242 95 3 26 chr1 71397987 71398292 -171266061 + AluSx SINE Alu 1 298 -14 220 293 85 94 chr1 71398366 71398472 -171265881 - L3 LINE CR1 -103 1474 1370 290 226 123 38 chr1 71398475 71398581 -171265772 - Charlie8 DNA MER1_type -2270 147 33 599 312 133 78 chr1 71398615 71399400 -171264953 - L3 LINE CR1 -320 1257 430 4937 123 50 8 chr1 71399486 71400310 -171264043 + L1MB2 LINE L1 5310 6167 -4 238 138 0 69 chr1 71400332 71400390 -171263963 - MIR3 SINE MIR -51 157 97 2081 201 126 20 chr1 71451337 71451839 -171212514 - MLT1E3 LTR MaLR -69 555 1 27 0 0 0 chr1 71451985 71452012 -171212341 + AT_rich Low_complexity Low_complexity 1 27 0 850 245 110 17 chr1 71453076 71453313 -171211040 + MIR SINE MIR 2 260 -2 555 295 60 32 chr1 71453313 71453530 -171210823 - MIR SINE MIR -25 237 15 342 153 0 0 chr1 71453926 71453985 -171210368 + (CA)n Simple_repeat Simple_repeat 2 60 0 288 222 28 0 chr1 71453996 71454068 -171210285 + AluJ/FRAM SINE Alu 229 302 0 328 330 101 55 chr1 71454552 71454937 -171209416 - L2 LINE L2 -8 3264 2862 302 289 17 87 chr1 71455443 71455616 -171208737 - L2 LINE L2 -919 2395 2235 222 161 0 36 chr1 71455713 71455769 -171208584 + (CTTTA)n Simple_repeat Simple_repeat 2 55 0 829 189 109 0 chr1 71455817 71456018 -171208335 + L1MA8 LINE L1 6067 6289 -2 257 237 237 68 chr1 71456348 71456466 -171207887 + L2 LINE L2 2584 2721 -593 531 0 0 0 chr1 71456466 71456525 -171207828 + (TCTCCC)n Simple_repeat Simple_repeat 3 61 0 6141 80 45 28 chr1 71456533 71458619 -171205734 + SVA Other Other 50 1406 0 517 289 82 30 chr1 71458704 71459033 -171205320 + L2 LINE L2 2837 3182 -131 205 261 217 72 chr1 71459188 71459506 -171204847 - L2 LINE L2 -40 3232 2869 478 311 73 11 chr1 71462618 71462795 -171201558 - L2 LINE L2 -190 3082 2895 2171 110 16 13 chr1 71463341 71463650 -171200703 - AluSg SINE Alu 0 310 1 225 284 209 15 chr1 71463679 71463813 -171200540 - L1ME LINE L1 -266 5855 5696 385 288 115 52 chr1 71463828 71464533 -171199820 + L1ME LINE L1 4942 5709 -866 2047 140 10 0 chr1 71464533 71464840 -171199513 + AluJo SINE Alu 3 312 0 385 288 115 52 chr1 71464840 71464973 -171199380 + L1MC/D LINE L1 5709 5832 -743 271 287 69 0 chr1 71464975 71465062 -171199291 + L2 LINE L2 3217 3309 -4 206 244 0 0 chr1 71465158 71465203 -171199150 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr1 71465869 71465891 -171198462 + GC_rich Low_complexity Low_complexity 1 22 0 371 278 126 39 chr1 71465898 71466128 -171198225 - L1ME LINE L1 -505 5616 5367 25 31 0 0 chr1 71466255 71466287 -171198066 + AT_rich Low_complexity Low_complexity 1 32 0 513 293 142 13 chr1 71466528 71466760 -171197593 - MLT1J LTR MaLR -179 332 71 30 59 0 0 chr1 71466883 71466934 -171197419 + AT_rich Low_complexity Low_complexity 1 51 0 1960 163 0 3 chr1 71467626 71467932 -171196421 - AluJo SINE Alu -3 309 5 22 35 0 0 chr1 71468145 71468174 -171196179 + AT_rich Low_complexity Low_complexity 1 29 0 281 218 90 0 chr1 71468286 71468364 -171195989 - L2 LINE L2 0 3313 3229 200 338 0 0 chr1 71468338 71468406 -171195947 - L2 LINE L2 -273 3040 2973 * 672 286 45 26 chr1 71468546 71468788 -171195565 + MIR SINE MIR 4 246 -16 1235 166 72 18 chr1 71468795 71469018 -171195335 - MER46A DNA MER2_type 0 236 2 323 333 78 35 chr1 71469737 71469878 -171194475 + L2 LINE L2 3126 3272 0 2020 147 41 0 chr1 71469927 71470247 -171194106 - MER7A DNA MER2_type -12 334 4 1153 188 10 10 chr1 71470356 71470564 -171193789 + MER3 DNA MER1_type 1 208 -1 21 36 0 0 chr1 71470706 71470734 -171193619 + AT_rich Low_complexity Low_complexity 1 28 0 2175 107 7 0 chr1 71471151 71471441 -171192912 + AluSp SINE Alu 6 297 -16 471 303 52 0 chr1 71472569 71472724 -171191629 + L3 LINE CR1 1183 1345 -232 281 252 215 9 chr1 71473095 71473202 -171191151 - MER94 DNA DNA 0 134 6 378 273 4 145 chr1 71473289 71473516 -171190837 + L3 LINE CR1 1361 1555 -22 684 251 177 19 chr1 71474616 71474995 -171189358 - HAL1 LINE L1 -1 2506 2068 1356 271 51 42 chr1 71475209 71475782 -171188571 - HAL1 LINE L1 -724 1783 1202 2243 77 0 45 chr1 71475782 71476093 -171188260 - AluY SINE Alu -14 297 1 1356 271 51 42 chr1 71476093 71476166 -171188187 - HAL1 LINE L1 -1305 1202 1131 287 286 56 56 chr1 71476174 71476370 -171187983 - HAL1 LINE L1 -1569 938 743 246 143 0 0 chr1 71476437 71476486 -171187867 + (GA)n Simple_repeat Simple_repeat 1 49 0 372 365 130 19 chr1 71476488 71476696 -171187657 - HAL1 LINE L1 -1887 620 390 526 286 61 34 chr1 71476717 71477014 -171187339 - HAL1 LINE L1 -2181 326 22 2265 102 0 3 chr1 71477313 71477608 -171186745 - AluSq SINE Alu -19 294 1 2304 73 3 22 chr1 71478000 71478313 -171186040 + AluY SINE Alu 1 307 -4 268 310 80 40 chr1 71479312 71479412 -171184941 - L2 LINE L2 -19 3253 3150 358 250 109 22 chr1 71480371 71480555 -171183798 + L1ME LINE L1 5576 5775 -346 2455 81 0 0 chr1 71480636 71480934 -171183419 + AluSx SINE Alu 1 298 -14 794 128 57 0 chr1 71480947 71481088 -171183265 + L1MB2 LINE L1 6021 6169 -2 306 0 0 0 chr1 71481131 71481165 -171183188 + (CA)n Simple_repeat Simple_repeat 1 34 0 581 252 58 7 chr1 71481197 71481352 -171183001 + MIR SINE MIR 56 218 -44 985 311 57 43 chr1 71481459 71482021 -171182332 - L2 LINE L2 -361 2953 2384 2618 208 21 30 chr1 71482027 71482741 -171181612 + L1ME2 LINE L1 5465 6332 -2 694 176 40 0 chr1 71482750 71482875 -171181478 + FLAM_C SINE Alu 2 131 -2 2672 249 55 31 chr1 71483035 71483715 -171180638 + L1M4 LINE L1 3688 4405 -1741 2176 107 3 13 chr1 71483715 71484014 -171180339 + AluSp SINE Alu 1 296 -17 2672 249 55 31 chr1 71484014 71484379 -171179974 + L1M4 LINE L1 4405 4759 -1387 191 305 161 8 chr1 71484612 71484730 -171179623 - L2 LINE L2 -267 3005 2870 1985 90 11 15 chr1 71484882 71485051 -171179302 - AluSx SINE Alu -9 303 134 2243 112 0 3 chr1 71485051 71485354 -171178999 - AluSc SINE Alu -7 302 1 1985 90 11 15 chr1 71485354 71485451 -171178902 - AluSx SINE Alu -178 134 38 624 283 49 31 chr1 71485585 71485811 -171178542 - MIR SINE MIR -29 233 4 194 333 131 41 chr1 71486071 71486459 -171177894 + L2 LINE L2 2252 2674 -640 1620 159 8 8 chr1 71489033 71489193 -171175160 - AluJo SINE Alu -19 293 131 2521 81 0 0 chr1 71489193 71489502 -171174851 - AluY SINE Alu -2 309 1 1620 159 8 8 chr1 71489502 71489598 -171174755 - AluJo SINE Alu -180 132 37 511 331 90 41 chr1 71490161 71490674 -171173679 + L2 LINE L2 2093 2630 -684 192 240 0 130 chr1 71490985 71491085 -171173268 - L2 LINE L2 -8 3264 3178 238 250 18 0 chr1 71492034 71492090 -171172263 - L2 LINE L2 0 3272 3216 409 232 21 42 chr1 71492093 71492188 -171172165 - MIR SINE MIR -88 174 82 937 243 142 5 chr1 71492198 71492416 -171171937 + MIR SINE MIR 3 250 -12 968 187 6 0 chr1 71493027 71493198 -171171155 + MER5B DNA MER1_type 1 172 -6 211 347 58 16 chr1 71493203 71493324 -171171029 + MIR SINE MIR 12 137 -125 234 294 110 28 chr1 71493759 71493868 -171170485 - L2 LINE L2 -18 3254 3137 237 250 31 0 chr1 71494218 71494282 -171170071 + MIR SINE MIR 100 165 -97 2079 137 10 13 chr1 71494317 71494630 -171169723 + AluSx SINE Alu 1 312 0 1772 178 0 0 chr1 71494955 71495231 -171169122 + AluJo SINE Alu 1 276 -36 1175 40 0 7 chr1 71495238 71495388 -171168965 + (GAA)n Simple_repeat Simple_repeat 2 150 0 5476 42 1 5 chr1 71495563 71496232 -171168121 - L1PA5 LINE L1 0 6154 5488 1010 269 205 27 chr1 71496282 71496837 -171167516 + L3 LINE CR1 913 1566 -11 593 120 0 30 chr1 71496942 71497042 -171167311 - AluJ/FRAM SINE Alu 0 312 216 * 674 139 0 0 chr1 71497038 71497139 -171167214 - AluSg/x SINE Alu -125 187 87 1986 148 90 14 chr1 71497150 71497583 -171166770 - LTR54B LTR ERV1 -32 466 1 1206 208 21 4 chr1 71500042 71500283 -171164070 + MIR SINE MIR 18 262 0 283 276 69 0 chr1 71500384 71500471 -171163882 + MIR SINE MIR 87 179 -83 36 70 0 0 chr1 71500512 71500583 -171163770 + AT_rich Low_complexity Low_complexity 1 71 0 399 207 92 0 chr1 71500983 71501070 -171163283 + L2 LINE L2 3169 3263 -9 239 258 30 15 chr1 71502059 71502125 -171162228 - MIR SINE MIR -111 151 85 216 397 0 0 chr1 71502835 71502903 -171161450 - L3 LINE CR1 -93 1484 1417 295 301 89 24 chr1 71502979 71503102 -171161251 - MIR SINE MIR -112 150 20 344 340 125 38 chr1 71503219 71503507 -171160846 - L3 LINE CR1 -260 1317 1005 1782 117 119 78 chr1 71503579 71503778 -171160575 + MSTB1 LTR MaLR 6 195 -237 1827 173 7 0 chr1 71503778 71504079 -171160274 + AluJo SINE Alu 1 303 -9 1782 117 119 78 chr1 71504079 71504289 -171160064 + MSTB1 LTR MaLR 195 432 0 1876 264 52 38 chr1 71505150 71505286 -171159067 + L1MEc LINE L1 692 825 -5571 2345 88 0 16 chr1 71505286 71505594 -171158759 + AluSx SINE Alu 1 303 -9 1876 264 52 38 chr1 71505594 71506418 -171157935 + L1MEc LINE L1 825 1666 -4730 766 251 61 123 chr1 71506410 71506713 -171157640 + L1MEc LINE L1 3437 3712 -2503 * 4623 38 0 0 chr1 71506713 71507269 -171157084 + L1PA4 LINE L1 5597 6152 -3 766 251 61 123 chr1 71507269 71507356 -171156997 + L1MEc LINE L1 3712 3803 -2412 28 61 0 0 chr1 71507361 71507410 -171156943 + AT_rich Low_complexity Low_complexity 1 49 0 337 231 154 26 chr1 71507505 71507661 -171156692 + L1MEc LINE L1 3849 4024 -2191 14187 205 21 41 chr1 71507667 71511854 -171152499 + L1PA11 LINE L1 59 4136 -2325 8359 122 7 12 chr1 71511854 71513990 -171150363 + L1PA11 LINE L1 4349 6488 -1 14187 205 21 41 chr1 71513990 71514298 -171150055 + L1PA11 LINE L1 4136 4449 -2012 585 237 133 6 chr1 71514298 71514471 -171149882 + L2 LINE L2 3118 3312 -1 7285 48 0 0 chr1 71514519 71515799 -171148554 - L1PA6 LINE L1 -2 6152 4873 1705 215 46 22 chr1 71516048 71516504 -171147849 + MLT1C LTR MaLR 1 467 0 219 320 170 20 chr1 71517394 71517494 -171146859 + MIR SINE MIR 20 134 -74 368 359 147 27 chr1 71518321 71518463 -171145890 + L2 LINE L2 2951 3075 -197 2289 246 33 9 chr1 71518463 71519040 -171145313 - MLT1E LTR MaLR -2 591 1 368 359 147 27 chr1 71519040 71519156 -171145197 + L2 LINE L2 3075 3240 -32 264 247 12 12 chr1 71519712 71519793 -171144560 + MLT1H LTR MaLR 457 537 -12 490 339 16 16 chr1 71520089 71520331 -171144022 + MLT2E LTR ERVL 383 624 -4 589 238 119 89 chr1 71520815 71520866 -171143487 + MLT1L LTR MaLR 153 201 -414 2050 138 10 0 chr1 71520866 71521156 -171143197 + AluSq SINE Alu 1 293 -20 589 238 119 89 chr1 71521156 71521541 -171142812 + MLT1L LTR MaLR 201 602 -13 2108 129 3 0 chr1 71521771 71522073 -171142280 - AluSx SINE Alu -9 303 1 542 259 18 12 chr1 71522578 71522744 -171141609 + MIR SINE MIR 74 240 -22 222 233 0 33 chr1 71522944 71523004 -171141349 + L2 LINE L2 3214 3271 -1 942 166 0 0 chr1 71524170 71524309 -171140044 + AluJb SINE Alu 145 283 -29 211 91 0 0 chr1 71524309 71524342 -171140011 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 201 309 0 0 chr1 71524389 71524444 -171139909 + MIR SINE MIR 187 241 -21 279 295 0 71 chr1 71524514 71524581 -171139772 - MER5A DNA MER1_type -78 111 54 2497 47 17 0 chr1 71524581 71524879 -171139474 + AluY SINE Alu 1 303 -8 279 295 0 71 chr1 71524879 71524923 -171139430 - MER5A DNA MER1_type -135 54 8 1052 141 0 27 chr1 71525173 71525358 -171138995 + AluSg/x SINE Alu 130 309 -1 483 370 27 14 chr1 71526052 71526347 -171138006 - L3b LINE CR1 -130 1453 1155 527 254 43 152 chr1 71526809 71527042 -171137311 - MLT1L LTR MaLR -15 590 302 1718 139 68 31 chr1 71527042 71527336 -171137017 + AluJo SINE Alu 1 305 -7 527 254 43 152 chr1 71527336 71527405 -171136948 - MLT1L LTR MaLR -303 302 227 34 42 0 0 chr1 71527619 71527667 -171136686 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr1 71528607 71528627 -171135726 + (A)n Simple_repeat Simple_repeat 1 20 0 1752 257 84 24 chr1 71528976 71529478 -171134875 - MLT1H LTR MaLR -6 543 12 214 176 0 0 chr1 71529555 71529589 -171134764 - L2 LINE L2 -36 3236 3203 45747 34 0 1 chr1 71529622 71535782 -171128571 + L1PA3 LINE L1 1 6155 0 34 55 0 0 chr1 71535798 71535853 -171128500 + AT_rich Low_complexity Low_complexity 1 55 0 358 275 42 8 chr1 71536044 71536164 -171128189 + L2 LINE L2 3175 3298 -15 451 326 36 59 chr1 71536712 71537019 -171127334 - L2 LINE L2 -166 3106 2807 528 300 108 18 chr1 71537324 71537547 -171126806 + MIR SINE MIR 20 262 0 564 213 130 54 chr1 71537914 71538153 -171126200 + MIR SINE MIR 5 261 -1 335 198 121 0 chr1 71538322 71538413 -171125940 - MIR SINE MIR -64 198 97 192 77 0 0 chr1 71539095 71539121 -171125232 + (CA)n Simple_repeat Simple_repeat 1 26 0 890 144 0 0 chr1 71539871 71539989 -171124364 + FLAM_C SINE Alu 1 118 -15 28 29 0 0 chr1 71539990 71540025 -171124328 + AT_rich Low_complexity Low_complexity 1 35 0 2253 47 4 4 chr1 71540429 71540704 -171123649 - AluY SINE Alu 0 311 37 191 264 144 72 chr1 71540820 71540945 -171123408 + MER5A DNA MER1_type 34 167 -22 270 222 34 103 chr1 71540966 71541093 -171123260 - MER5A DNA MER1_type -10 168 60 4937 163 16 8 chr1 71541093 71541505 -171122848 - L1MA8 LINE L1 -1 6290 5883 285 29 0 0 chr1 71541505 71541539 -171122814 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 2001 118 14 0 chr1 71541539 71541818 -171122535 - AluSq SINE Alu -30 283 1 4937 163 16 8 chr1 71541818 71542263 -171122090 - L1MA8 LINE L1 -407 5884 5425 507 267 108 0 chr1 71542530 71542716 -171121637 + MIR SINE MIR 2 204 -58 502 238 114 36 chr1 71542751 71542951 -171121402 - MIR SINE MIR -33 229 19 300 254 0 0 chr1 71543860 71543927 -171120426 - MIR SINE MIR -148 114 48 23 54 0 0 chr1 71543980 71544017 -171120336 + AT_rich Low_complexity Low_complexity 1 37 0 433 295 201 37 chr1 71544196 71544603 -171119750 - L1MC4a LINE L1 -1886 5922 5449 487 290 23 51 chr1 71544622 71544839 -171119514 - L2 LINE L2 0 3313 3103 1792 276 105 17 chr1 71545546 71546237 -171118116 - L2 LINE L2 -226 3087 2330 427 331 116 43 chr1 71546987 71547436 -171116917 - L2 LINE L2 -86 3186 2717 1735 192 26 55 chr1 71547489 71547874 -171116479 - MLT1A2 LTR MaLR 0 374 1 279 299 82 15 chr1 71547954 71548088 -171116265 + MIR SINE MIR 51 193 -69 1622 140 102 71 chr1 71548118 71548482 -171115871 - THE1C LTR MaLR 0 375 1 2706 133 48 14 chr1 71549837 71550251 -171114102 - MSTA LTR MaLR 0 428 1 217 234 0 0 chr1 71550264 71550311 -171114042 - MIR SINE MIR -122 140 94 2273 83 38 0 chr1 71550314 71550602 -171113751 + AluSp SINE Alu 1 299 -14 255 238 119 53 chr1 71550961 71551050 -171113303 + MLT1J LTR MaLR 343 447 -64 1149 211 72 0 chr1 71551050 71551259 -171113094 - MER58A DNA MER1_type 0 224 1 255 238 119 53 chr1 71551259 71551320 -171113033 + MLT1J LTR MaLR 447 503 -8 6183 223 26 42 chr1 71553467 71555117 -171109236 + L1PBb LINE L1 709 2384 -3819 2562 35 0 0 chr1 71555117 71555400 -171108953 - L1PA5 LINE L1 -7 6147 5865 6183 223 26 42 chr1 71555400 71555481 -171108872 + L1PBb LINE L1 2384 2465 -3738 1509 208 17 7 chr1 71555481 71555770 -171108583 - AluJb SINE Alu -20 292 1 6183 223 26 42 chr1 71555770 71556791 -171107562 + L1PBb LINE L1 2465 3508 -2695 1180 133 0 0 chr1 71556796 71556962 -171107391 - AluSg/x SINE Alu -21 291 126 2174 258 76 24 chr1 71557024 71557092 -171107261 + L1M4 LINE L1 3015 3078 -3068 1328 39 0 0 chr1 71557092 71557246 -171107107 + L1PA6 LINE L1 6000 6153 -1 2174 258 76 24 chr1 71557246 71558211 -171106142 + L1M4 LINE L1 3078 4119 -2027 2018 142 13 7 chr1 71558252 71558562 -171105791 + AluSq SINE Alu 1 312 -1 506 46 35 23 chr1 71558594 71558681 -171105672 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 243 299 113 10 chr1 71558832 71558929 -171105424 + L2 LINE L2 3200 3306 -7 1585 267 106 17 chr1 71558962 71559514 -171104839 - MLT1H1 LTR MaLR -1 554 2 26 74 0 0 chr1 71559572 71559626 -171104727 + AT_rich Low_complexity Low_complexity 1 54 0 2208 90 21 7 chr1 71559715 71560005 -171104348 - AluSx SINE Alu -17 295 2 1864 175 3 0 chr1 71560684 71560993 -171103360 + AluJo SINE Alu 1 310 -2 2155 124 13 0 chr1 71561506 71561805 -171102548 + AluSx SINE Alu 1 303 -9 436 254 152 0 chr1 71561906 71562071 -171102282 - MIR SINE MIR -2 260 71 2263 95 7 16 chr1 71562140 71562445 -171101908 + AluSx SINE Alu 1 302 -10 258 232 32 56 chr1 71562708 71562833 -171101520 - L1MC4 LINE L1 0 8042 7921 2104 128 0 3 chr1 71562861 71563157 -171101196 - AluSx SINE Alu -17 295 1 307 323 83 0 chr1 71563742 71563875 -171100478 + MIR SINE MIR 69 212 -50 2299 91 0 7 chr1 71563896 71564192 -171100161 - AluSg1 SINE Alu -15 294 1 606 286 0 16 chr1 71564228 71564410 -171099943 - MIR SINE MIR -73 189 11 1191 189 38 5 chr1 71564412 71564624 -171099729 + MER20 DNA MER1_type 1 219 0 428 317 57 49 chr1 71565957 71566222 -171098131 - L3 LINE CR1 -1 1576 1310 866 281 28 0 chr1 71566866 71567119 -171097234 + MIR SINE MIR 2 261 -1 297 154 19 0 chr1 71567162 71567214 -171097139 - MLT2B1 LTR ERVL -1 514 462 1307 201 9 115 chr1 71567296 71567645 -171096708 - MLT2B1 LTR ERVL -37 483 172 348 235 143 0 chr1 71567928 71568026 -171096327 + MER96 DNA MER1_type? 64 175 0 416 285 31 0 chr1 71568026 71568156 -171096197 + MIR3 SINE MIR 52 185 -23 195 269 48 97 chr1 71568174 71568319 -171096034 - L2 LINE L2 -1180 2134 1997 755 258 85 49 chr1 71568528 71568893 -171095460 - MLT1J1 LTR MaLR -44 402 25 2533 143 70 2 chr1 71568963 71569361 -171094992 + MSTB LTR MaLR 2 426 0 537 266 58 75 chr1 71569542 71569783 -171094570 + MIR SINE MIR 13 249 -13 2646 42 0 6 chr1 71569821 71570134 -171094219 + AluY SINE Alu 1 311 0 393 297 145 0 chr1 71570761 71570899 -171093454 + MIR SINE MIR 50 207 -55 1563 176 10 27 chr1 71571573 71571868 -171092485 - AluJo SINE Alu -22 290 1 435 223 27 27 chr1 71572001 71572113 -171092240 - MIR3 SINE MIR -52 156 45 338 45 0 0 chr1 71572690 71572734 -171091619 - L1MA9 LINE L1 0 6312 6269 1195 124 0 0 chr1 71572735 71572896 -171091457 + AluSg/x SINE Alu 135 295 -15 5712 175 25 9 chr1 71572896 71574040 -171090313 - L1MA9 LINE L1 -40 6272 5112 495 286 119 24 chr1 71574068 71574288 -171090065 - MIR SINE MIR -1 261 31 320 246 62 39 chr1 71575267 71575397 -171088956 - MIR SINE MIR -46 216 84 302 254 24 48 chr1 71575949 71576075 -171088278 + LTR33A LTR ERVL 415 523 0 195 343 10 49 chr1 71576306 71576408 -171087945 + MIR SINE MIR 16 113 -95 1588 199 170 51 chr1 71576676 71577128 -171087225 + MLT1F LTR MaLR 1 506 -36 1333 120 0 0 chr1 71578269 71578453 -171085900 + AluSg/x SINE Alu 129 312 0 558 271 62 95 chr1 71578469 71578901 -171085452 + MLT1K LTR MaLR 171 588 0 1991 131 0 0 chr1 71579571 71579845 -171084508 + AluSx SINE Alu 38 311 -1 325 315 115 6 chr1 71580313 71580478 -171083875 + MIR SINE MIR 51 233 -29 2211 84 7 7 chr1 71580481 71580768 -171083585 - AluSc SINE Alu -21 288 2 1493 204 76 39 chr1 71581073 71581492 -171082861 - MLT1C LTR MaLR -1 466 21 614 205 33 20 chr1 71581492 71581643 -171082710 - MIR SINE MIR -101 161 9 1964 145 10 0 chr1 71581699 71581995 -171082358 - AluJb SINE Alu -13 299 1 324 316 52 39 chr1 71582004 71582194 -171082159 - MIR SINE MIR -63 145 3 357 243 250 7 chr1 71582554 71582690 -171081663 + MIR3 SINE MIR 2 170 -38 198 0 0 0 chr1 71583095 71583117 -171081236 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 719 250 29 0 chr1 71583778 71583950 -171080403 + MIR SINE MIR 58 234 -28 669 198 16 0 chr1 71584104 71584225 -171080128 + MER63A DNA MER1_type 63 185 -25 238 233 258 25 chr1 71584603 71584723 -171079630 + L2 LINE L2 3166 3313 0 3467 235 27 5 chr1 71585659 71586403 -171077950 + MST-int LTR MaLR 828 1587 -64 707 76 0 0 chr1 71586403 71586488 -171077865 + AluY SINE Alu 2 89 -222 2185 62 4 0 chr1 71586488 71586746 -171077607 - AluSp SINE Alu -54 259 1 422 284 110 19 chr1 71586952 71587173 -171077180 - MIR SINE MIR -13 249 11 393 278 124 38 chr1 71587652 71587768 -171076585 + MIR SINE MIR 33 138 -124 2313 115 0 3 chr1 71587768 71588073 -171076280 + AluSx SINE Alu 1 304 -8 393 278 124 38 chr1 71588073 71588165 -171076188 + MIR SINE MIR 138 259 -3 248 196 0 0 chr1 71588544 71588590 -171075763 - L2 LINE L2 -18 3254 3209 1737 174 3 3 chr1 71589928 71590210 -171074143 - AluJo SINE Alu -30 282 1 530 274 186 31 chr1 71590658 71590884 -171073469 + MIR SINE MIR 2 262 0 1570 177 13 61 chr1 71592252 71592562 -171071791 - AluJo SINE Alu -17 295 1 409 285 39 8 chr1 71592618 71592748 -171071605 - MIR SINE MIR -107 155 22 889 299 78 26 chr1 71592871 71593293 -171071060 + MLT1L LTR MaLR 172 615 0 820 203 113 54 chr1 71593399 71593621 -171070732 + MER46A DNA MER2_type 2 236 0 403 283 136 30 chr1 71593622 71593820 -171070533 + MIR SINE MIR 11 229 -33 277 186 0 0 chr1 71593915 71593958 -171070395 + MER94 DNA DNA 1 43 -91 395 326 129 28 chr1 71594939 71595372 -171068981 + MLT1K LTR MaLR 104 580 -8 482 145 13 0 chr1 71595555 71595631 -171068722 + MER116 DNA Mariner 1 77 -3 2038 151 0 16 chr1 71595654 71595971 -171068382 - AluJb SINE Alu 0 312 1 363 352 45 42 chr1 71596003 71596261 -171068092 + L2 LINE L2 2516 2777 -537 1885 138 0 63 chr1 71596261 71596579 -171067774 + AluSx SINE Alu 3 300 -12 363 352 45 42 chr1 71596579 71596698 -171067655 + L2 LINE L2 2777 2894 -420 341 256 122 99 chr1 71596749 71596921 -171067432 + MLT2E LTR ERVL 1 176 -452 213 352 19 50 chr1 71597001 71597160 -171067193 - L2 LINE L2 -2 3270 3117 399 175 147 42 chr1 71597219 71597362 -171066991 - MLT1J LTR MaLR -35 476 319 260 279 130 45 chr1 71597485 71597639 -171066714 - MLT1J LTR MaLR -342 169 3 259 313 25 0 chr1 71597712 71597792 -171066561 - L2 LINE L2 -236 3036 2955 2111 122 3 7 chr1 71598357 71598653 -171065700 - AluSx SINE Alu -17 295 1 450 225 0 0 chr1 71599475 71599564 -171064789 - L2 LINE L2 -2 3270 3182 193 221 310 28 chr1 71600444 71600589 -171063764 + MIR SINE MIR 29 214 -48 2530 78 0 0 chr1 71600598 71600905 -171063448 + AluY SINE Alu 1 307 -4 374 313 61 39 chr1 71600962 71601192 -171063161 + L3 LINE CR1 1320 1554 -23 572 294 27 11 chr1 71601228 71601412 -171062941 + MIR SINE MIR 12 198 -64 333 0 0 0 chr1 71601875 71601912 -171062441 + (CA)n Simple_repeat Simple_repeat 1 37 0 927 116 0 0 chr1 71602345 71602474 -171061879 - FLAM_C SINE Alu -12 131 3 309 347 14 61 chr1 71602476 71602689 -171061664 + MLT1K LTR MaLR 63 265 -323 472 355 6 0 chr1 71602733 71602902 -171061451 + MLT1K LTR MaLR 356 525 -63 1940 167 10 0 chr1 71602984 71603278 -171061075 - AluJb SINE Alu -15 297 1 360 209 131 47 chr1 71603650 71603841 -171060512 - MLT1K LTR MaLR -1 587 381 911 292 158 14 chr1 71604051 71604418 -171059935 + LTR16C LTR ERVL 72 491 0 564 151 28 28 chr1 71605193 71605372 -171058981 + (TG)n Simple_repeat Simple_repeat 2 180 0 434 107 65 30 chr1 71605410 71605579 -171058774 + (TG)n Simple_repeat Simple_repeat 1 175 0 227 138 46 15 chr1 71605600 71605665 -171058688 + (TG)n Simple_repeat Simple_repeat 1 67 0 495 108 63 22 chr1 71605684 71605907 -171058446 + (TG)n Simple_repeat Simple_repeat 1 231 0 3437 60 2 11 chr1 71606132 71606584 -171057769 - LTR7 LTR ERV1 -2 448 1 2715 63 45 13 chr1 71606584 71606964 -171057389 - HERVH LTR ERV1 0 7713 7322 1421 115 23 14 chr1 71606962 71607180 -171057173 - HERVH LTR ERV1 -1894 5819 5600 * 4494 134 1 1 chr1 71607181 71607843 -171056510 - HERVH LTR ERV1 -2564 5149 4488 3455 105 2 4 chr1 71607845 71608340 -171056013 - HERVH LTR ERV1 -3720 3993 3500 900 144 7 0 chr1 71608343 71608489 -171055864 - HERVH LTR ERV1 -4427 3286 3140 * 20910 86 14 28 chr1 71608468 71611505 -171052848 - HERVH LTR ERV1 -4718 2995 1 3411 59 16 7 chr1 71611507 71611951 -171052402 - LTR7 LTR ERV1 -2 448 1 405 0 0 0 chr1 71612198 71612243 -171052110 + (TA)n Simple_repeat Simple_repeat 1 45 0 332 279 101 0 chr1 71612630 71612759 -171051594 - MIR SINE MIR -108 154 13 182 167 74 19 chr1 71613476 71613530 -171050823 + MIR SINE MIR 132 188 -74 281 153 0 17 chr1 71613565 71613624 -171050729 + CT-rich Low_complexity Low_complexity 1 58 0 197 62 0 31 chr1 71613764 71613796 -171050557 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 181 303 193 25 chr1 71614145 71614264 -171050089 + L2 LINE L2 3134 3272 0 258 269 51 0 chr1 71615696 71615774 -171048579 + MIR SINE MIR 104 185 -77 2121 109 20 10 chr1 71615857 71616137 -171048216 + AluSq SINE Alu 1 286 -27 240 35 0 0 chr1 71616137 71616166 -171048187 + (CA)n Simple_repeat Simple_repeat 2 30 0 2121 109 20 10 chr1 71616166 71616189 -171048164 + AluSq SINE Alu 286 307 -6 1695 184 10 0 chr1 71616252 71616540 -171047813 + AluJo SINE Alu 11 301 -11 4585 198 28 5 chr1 71616576 71618109 -171046244 + L1MB3 LINE L1 4258 5829 -354 1255 121 11 16 chr1 71618110 71618300 -171046053 + AluJo SINE Alu 85 273 -39 489 97 0 0 chr1 71618302 71618374 -171045979 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 1760 157 72 9 chr1 71618374 71618719 -171045634 + L1MB3 LINE L1 5817 6183 0 252 125 88 0 chr1 71619108 71619188 -171045165 + (TA)n Simple_repeat Simple_repeat 2 88 0 345 287 9 28 chr1 71619787 71619895 -171044458 - MER5B DNA MER1_type -72 106 1 289 315 43 11 chr1 71620068 71620160 -171044193 - MIR SINE MIR -83 125 31 551 209 0 0 chr1 71620744 71620854 -171043499 - Tigger4(Zombi) DNA MER2_type -2621 110 1 1194 126 65 58 chr1 71620948 71621209 -171043144 - L1MA9 LINE L1 0 6312 6050 34 0 0 0 chr1 71621306 71621340 -171043013 + AT_rich Low_complexity Low_complexity 1 34 0 2277 74 39 0 chr1 71621347 71621630 -171042723 - AluY SINE Alu -9 302 9 405 187 44 11 chr1 71622186 71622277 -171042076 - MIR SINE MIR -64 144 51 1691 191 3 25 chr1 71622551 71622870 -171041483 - AluJb SINE Alu 0 312 1 375 255 122 25 chr1 71624009 71624205 -171040148 - MIR SINE MIR -14 248 34 547 243 61 17 chr1 71624270 71624451 -171039902 - MER112 DNA MER1_type -71 189 1 997 164 123 10 chr1 71624602 71624797 -171039556 - MER58A DNA MER1_type -2 222 6 1446 230 72 79 chr1 71624963 71625507 -171038846 - MLT1F LTR MaLR 0 542 3 390 224 167 32 chr1 71625526 71625682 -171038671 - L2 LINE L2 0 3313 3137 1202 213 34 67 chr1 71625694 71626014 -171038339 + MLT1A2 LTR MaLR 19 327 -47 2047 102 0 0 chr1 71626014 71626268 -171038085 + AluSg SINE Alu 1 254 -56 1202 213 34 67 chr1 71626268 71626304 -171038049 + MLT1A2 LTR MaLR 327 363 -11 922 288 153 11 chr1 71626312 71626825 -171037528 - L2 LINE L2 -167 3146 2552 403 310 117 12 chr1 71626925 71627096 -171037257 + MIR3 SINE MIR 20 208 0 417 261 171 35 chr1 71627726 71627925 -171036428 - MIR SINE MIR -7 255 30 921 257 8 33 chr1 71628169 71628410 -171035943 + MIR SINE MIR 28 262 0 2438 88 0 0 chr1 71628795 71629091 -171035262 + AluSc SINE Alu 1 296 -13 226 187 0 154 chr1 71629190 71629281 -171035072 - Charlie8 DNA MER1_type -2255 162 86 6464 22 0 0 chr1 71629352 71630093 -171034260 + L1PA3 LINE L1 5412 6152 -3 1141 228 27 59 chr1 71630415 71630608 -171033745 - L1 LINE L1 -743 5403 5228 1611 193 11 18 chr1 71630608 71630893 -171033460 - AluJo SINE Alu -19 293 11 1141 228 27 59 chr1 71630893 71631107 -171033246 - L1 LINE L1 -918 5228 5009 2054 113 0 4 chr1 71631422 71631697 -171032656 + AluSp SINE Alu 1 274 -39 1504 184 41 24 chr1 71632298 71632592 -171031761 + AluJo SINE Alu 1 299 -13 6641 120 27 11 chr1 71632618 71634587 -171029766 - L1MA2 LINE L1 0 6304 4299 517 276 66 83 chr1 71635066 71635534 -171028819 + LTR33A LTR ERVL 60 519 -4 278 274 53 0 chr1 71635670 71635765 -171028588 - MER110 LTR ERV1 -19 472 373 192 278 0 0 chr1 71637009 71637081 -171027272 + (TA)n Simple_repeat Simple_repeat 2 73 0 341 323 30 12 chr1 71637084 71637248 -171027105 - L1ME LINE L1 -481 5640 5474 367 310 129 12 chr1 71637312 71637483 -171026870 - L1 LINE L1 -1222 4924 4734 298 285 64 73 chr1 71638218 71638395 -171025958 - MER5B DNA MER1_type -1 188 2 1359 166 0 0 chr1 71638455 71638676 -171025677 - AluJo SINE Alu 0 304 84 5846 115 27 19 chr1 71639311 71639765 -171024588 + Tigger1 DNA MER2_type 12 461 -1957 1876 127 40 7 chr1 71639765 71640063 -171024290 - AluSx SINE Alu 0 307 1 5846 115 27 19 chr1 71640063 71640564 -171023789 + Tigger1 DNA MER2_type 461 976 -1442 399 100 17 0 chr1 71640587 71640647 -171023706 - U7 snRNA snRNA -1 62 2 * 3714 109 32 13 chr1 71640642 71641071 -171023282 + Tigger1 DNA MER2_type 957 1402 -1016 2009 150 7 0 chr1 71641071 71641365 -171022988 - AluSx SINE Alu -16 296 1 3714 109 32 13 chr1 71641365 71641533 -171022820 + Tigger1 DNA MER2_type 1402 1565 -853 2412 107 52 24 chr1 71641551 71641971 -171022382 - MER51D LTR ERV1 -74 583 152 2280 92 51 62 chr1 71641971 71642239 -171022114 - L1PA11 LINE L1 0 6174 5910 2549 80 0 0 chr1 71642239 71642550 -171021803 - AluY SINE Alu 0 311 1 2280 92 51 62 chr1 71642550 71642670 -171021683 - L1PA11 LINE L1 -264 5910 5790 5431 120 14 6 chr1 71642670 71642893 -171021460 + Tigger1 DNA MER2_type 1555 1775 -643 2177 70 3 31 chr1 71642893 71643180 -171021173 + AluSx SINE Alu 15 293 -19 5431 120 14 6 chr1 71643180 71643813 -171020540 + Tigger1 DNA MER2_type 1775 2418 0 232 25 75 0 chr1 71645146 71645186 -171019167 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5892 49 0 0 chr1 71645186 71645899 -171018454 - L1PA5 LINE L1 -11 6143 5431 2517 69 3 0 chr1 71646114 71646419 -171017934 - AluY SINE Alu -5 306 1 254 245 102 71 chr1 71646711 71646809 -171017544 + MIR SINE MIR 84 184 -78 710 270 126 14 chr1 71647282 71647504 -171016849 + MIR SINE MIR 16 262 0 26 0 0 0 chr1 71647506 71647532 -171016821 + AT_rich Low_complexity Low_complexity 1 26 0 1738 88 77 0 chr1 71647540 71647814 -171016539 - L1MA2 LINE L1 -2 6302 6008 222 323 65 65 chr1 71647828 71647952 -171016401 - MIR SINE MIR -133 129 6 311 293 9 9 chr1 71648377 71648483 -171015870 - MIR SINE MIR -123 139 34 243 0 0 0 chr1 71648582 71648609 -171015744 + (CA)n Simple_repeat Simple_repeat 2 28 0 525 57 28 38 chr1 71650136 71650242 -171014111 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 395 338 96 18 chr1 71650513 71650794 -171013559 + HAL1b LINE L1 42 344 -1004 474 224 70 51 chr1 71650893 71651049 -171013304 + HAL1b LINE L1 429 587 -761 602 270 63 11 chr1 71651068 71651338 -171013015 + HAL1b LINE L1 666 949 -399 533 209 59 20 chr1 71651378 71651531 -171012822 + HAL1b LINE L1 1161 1319 -29 591 265 130 26 chr1 71651550 71651992 -171012361 + MLT1H LTR MaLR 1 549 0 1163 63 0 0 chr1 71652054 71652212 -171012141 - L1P4 LINE L1 -354 5809 5652 21 0 0 0 chr1 71652218 71652239 -171012114 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr1 71652287 71652334 -171012019 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 1047 226 37 25 chr1 71652645 71652712 -171011641 - MLT1F LTR MaLR -3 564 499 2221 119 3 0 chr1 71652712 71653023 -171011330 + AluSp SINE Alu 1 312 -1 1047 226 37 25 chr1 71653023 71653435 -171010918 - MLT1F LTR MaLR -68 499 19 1620 157 31 0 chr1 71654295 71654419 -171009934 + AluJb SINE Alu 1 120 -192 790 39 15 39 chr1 71654419 71654549 -171009804 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 1620 157 31 0 chr1 71654549 71654679 -171009674 + AluJb SINE Alu 120 263 -49 450 0 0 0 chr1 71654691 71654741 -171009612 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 336 171 0 0 chr1 71655537 71655599 -171008754 - Alu SINE Alu -248 53 1 2112 182 2 15 chr1 71655803 71656198 -171008155 - MLT1B LTR MaLR 0 390 1 569 297 47 92 chr1 71656339 71656833 -171007520 + L2 LINE L2 2791 3260 -12 1718 138 78 16 chr1 71656853 71657223 -171007130 - L1MA9 LINE L1 -1 6311 5919 779 244 88 15 chr1 71657342 71657604 -171006749 - LTR67 LTR ERVL -4 553 273 611 251 101 49 chr1 71657750 71657997 -171006356 - LTR67 LTR ERVL -296 261 2 198 103 0 0 chr1 71658060 71658089 -171006264 + (TG)n Simple_repeat Simple_repeat 2 30 0 577 207 49 55 chr1 71660147 71660311 -171004042 + MER103 DNA DNA 2 164 -2 216 257 0 0 chr1 71661818 71661888 -171002465 + (TG)n Simple_repeat Simple_repeat 1 70 0 321 290 130 0 chr1 71662452 71662552 -171001801 + L2 LINE L2 3199 3311 -2 254 415 34 27 chr1 71662701 71662848 -171001505 - L2 LINE L2 -23 3249 3102 2717 224 56 21 chr1 71663416 71663982 -171000371 - L1ME2 LINE L1 -67 6166 5562 1908 182 74 29 chr1 71663982 71664250 -171000103 - MLT1C LTR MaLR 0 467 169 2184 106 0 0 chr1 71664250 71664596 -170999757 - AluSg SINE Alu 0 346 1 1908 182 74 29 chr1 71664596 71664771 -170999582 - MLT1C LTR MaLR -298 169 3 2717 224 56 21 chr1 71664771 71665011 -170999342 - L1ME2 LINE L1 -671 5562 5332 254 248 55 18 chr1 71665052 71665161 -170999192 - L1ME2 LINE L1 -1039 5176 5064 243 0 0 0 chr1 71665161 71665188 -170999165 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 777 160 7 60 chr1 71665191 71665341 -170999012 - FRAM SINE Alu -30 146 5 4893 247 70 10 chr1 71665361 71667335 -170997018 - L1ME2 LINE L1 -2040 4175 2119 1336 103 0 0 chr1 71667337 71667511 -170996842 - AluSg/x SINE Alu -5 307 134 832 205 12 12 chr1 71667545 71667706 -170996647 + FRAM SINE Alu 2 162 -4 667 267 53 35 chr1 71667724 71667854 -170996499 - L1ME2 LINE L1 -4439 1957 1831 1601 178 56 7 chr1 71667854 71668140 -170996213 + AluJb SINE Alu 1 300 -12 667 267 53 35 chr1 71668140 71668294 -170996059 - L1ME2 LINE L1 -4565 1831 1668 516 250 126 61 chr1 71668319 71668565 -170995788 - L1ME2 LINE L1 -4816 1580 1351 2500 72 0 3 chr1 71668565 71668871 -170995482 - AluY SINE Alu -6 305 1 516 250 126 61 chr1 71668871 71669445 -170994908 - L1ME2 LINE L1 -5045 1351 707 2181 135 0 0 chr1 71669461 71669758 -170994595 - AluSx SINE Alu -12 300 4 260 158 24 98 chr1 71670120 71670202 -170994151 - MLT1I LTR MaLR -3 406 331 704 59 10 0 chr1 71670497 71670599 -170993754 + (TCTCCC)n Simple_repeat Simple_repeat 3 105 0 5558 91 21 29 chr1 71670599 71671868 -170992485 + SVA Other Other 53 868 -520 4607 80 18 52 chr1 71671885 71672673 -170991680 + SVA Other Other 433 1193 -193 2770 10 0 0 chr1 71672673 71672976 -170991377 + AluY SINE Alu 1 303 -8 1880 19 0 0 chr1 71672976 71673210 -170991143 + SVA Other Other 1182 1417 0 544 206 0 0 chr1 71673221 71673357 -170990996 + L1PA4 LINE L1 5998 6133 -22 198 0 0 0 chr1 71673370 71673392 -170990961 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 429 20 0 0 chr1 71673561 71673611 -170990742 + (A)n Simple_repeat Simple_repeat 1 50 0 1184 42 0 36 chr1 71673620 71673828 -170990525 + L1PA4 LINE L1 5997 6155 0 352 253 60 0 chr1 71674984 71675067 -170989286 + L2 LINE L2 3225 3312 -1 26 0 0 0 chr1 71675764 71675790 -170988563 + AT_rich Low_complexity Low_complexity 1 26 0 448 189 74 27 chr1 71675898 71676046 -170988307 - HAL1 LINE L1 -94 2413 2259 361 255 26 39 chr1 71676215 71676368 -170987985 - HAL1 LINE L1 -509 1998 1848 434 263 25 8 chr1 71676405 71676523 -170987830 - HAL1 LINE L1 -1797 710 591 604 200 73 57 chr1 71676547 71676787 -170987566 - MER34 LTR ERV1 0 542 319 534 159 0 114 chr1 71676784 71676916 -170987437 - MER34B LTR ERV1 -439 126 10 * 991 285 62 27 chr1 71677004 71677442 -170986911 - HAL1 LINE L1 -2046 461 9 193 237 226 32 chr1 71677462 71677555 -170986798 - MIR SINE MIR -68 140 30 499 304 66 16 chr1 71677591 71677834 -170986519 - MIR SINE MIR 0 262 8 3179 237 63 85 chr1 71678163 71679410 -170984943 - MLT1A2-int LTR MaLR -13 1358 6 1859 182 10 77 chr1 71679414 71679815 -170984538 - MLT1A2 LTR MaLR 0 374 1 1744 218 52 19 chr1 71679937 71680100 -170984253 + MER49 LTR ERV1 1 157 -765 1548 195 3 23 chr1 71680100 71680429 -170983924 - AluSx SINE Alu 0 312 1 1744 218 52 19 chr1 71680429 71680869 -170983484 + MER49 LTR ERV1 157 898 -24 283 292 59 3 chr1 71681271 71681413 -170982940 + L1MEd LINE L1 1072 1244 -1246 439 225 140 19 chr1 71681439 71681622 -170982731 - MIR SINE MIR -32 230 25 824 156 14 7 chr1 71682103 71682244 -170982109 - MSTC LTR MaLR -1 427 286 1743 145 49 30 chr1 71682247 71682551 -170981802 + AluJb SINE Alu 1 310 -2 310 294 63 14 chr1 71683688 71683831 -170980522 - L1ME LINE L1 -346 5775 5626 2128 108 0 14 chr1 71684351 71684662 -170979691 - AluSq SINE Alu 0 307 1 233 247 28 0 chr1 71684987 71685044 -170979309 - Alu SINE Alu -127 176 138 25 51 0 0 chr1 71685363 71685402 -170978951 + AT_rich Low_complexity Low_complexity 1 39 0 308 269 117 41 chr1 71685413 71685584 -170978769 - HAL1b LINE L1 -437 911 728 548 283 32 69 chr1 71686196 71686443 -170977910 + MLT1J LTR MaLR 272 509 -2 346 283 63 47 chr1 71686663 71686854 -170977499 - MLT1J1 LTR MaLR -190 256 63 1346 115 0 0 chr1 71686989 71687172 -170977181 - AluSg/x SINE Alu -3 309 127 2256 103 3 3 chr1 71687176 71687478 -170976875 - AluSq SINE Alu -11 302 1 2911 7 0 0 chr1 71687961 71688271 -170976082 - AluYb8 SINE Alu -8 310 1 430 351 67 4 chr1 71688647 71688872 -170975481 - HERVL LTR ERVL -3425 2339 2101 346 310 62 8 chr1 71688909 71689114 -170975239 - HERVL LTR ERVL -3179 1817 1703 341 284 138 48 chr1 71689333 71689667 -170974686 - MLT1K LTR MaLR -2 586 223 629 206 103 29 chr1 71689686 71689861 -170974492 + MIR SINE MIR 36 223 -39 2268 185 28 19 chr1 71690685 71691111 -170973242 + MSTB1 LTR MaLR 1 430 -2 251 174 0 0 chr1 71691120 71691166 -170973187 - L2 LINE L2 -2 3311 3266 1431 131 18 4 chr1 71691606 71691835 -170972518 + L1PA11 LINE L1 5943 6174 0 21 0 0 0 chr1 71692409 71692430 -170971923 + AT_rich Low_complexity Low_complexity 1 21 0 1854 167 20 85 chr1 71693347 71693737 -170970616 - MLT1A1 LTR MaLR 0 365 1 482 212 120 56 chr1 71693980 71694210 -170970143 + MLT1J2 LTR MaLR 192 389 -20 332 289 234 5 chr1 71694473 71694670 -170969683 + MIR SINE MIR 20 261 -1 214 304 13 0 chr1 71694703 71694782 -170969571 + CT-rich Low_complexity Low_complexity 1 80 0 * 219 241 0 37 chr1 71694731 71694785 -170969568 + C-rich Low_complexity Low_complexity 4 55 0 2305 77 30 0 chr1 71694933 71695232 -170969121 + AluY SINE Alu 1 308 -3 2013 128 0 0 chr1 71695707 71695981 -170968372 - AluSx SINE Alu -38 274 1 285 394 32 30 chr1 71695983 71696321 -170968032 + L2 LINE L2 2196 2534 -780 429 281 25 50 chr1 71696667 71696788 -170967565 + MIR SINE MIR 46 163 -99 1105 250 124 37 chr1 71696788 71697255 -170967098 + MLT1H LTR MaLR 1 549 0 225 333 0 14 chr1 71697256 71697328 -170967025 + MIR SINE MIR 160 230 -32 239 363 32 32 chr1 71697370 71697560 -170966793 + L2 LINE L2 2864 3053 -219 24 0 0 0 chr1 71697652 71697676 -170966677 + AT_rich Low_complexity Low_complexity 1 24 0 194 150 0 50 chr1 71697965 71698005 -170966348 + L2 LINE L2 3272 3309 -4 197 313 88 53 chr1 71698037 71698126 -170966227 - L2 LINE L2 -189 3083 2999 1643 182 0 64 chr1 71698126 71698261 -170966092 + AluJo SINE Alu 1 143 -169 2339 65 3 10 chr1 71698261 71698554 -170965799 - AluY SINE Alu -20 291 1 1643 182 0 64 chr1 71698554 71698747 -170965606 + AluJo SINE Alu 143 308 -4 197 313 88 53 chr1 71698747 71698974 -170965379 - L2 LINE L2 -273 2999 2738 326 303 42 7 chr1 71698996 71699138 -170965215 - L1ME4a LINE L1 -12 6109 5963 1285 203 54 4 chr1 71699140 71699416 -170964937 - L1MC4 LINE L1 0 8042 7753 255 59 0 0 chr1 71699437 71699471 -170964882 + Alu SINE Alu 261 294 -7 * 262 75 0 0 chr1 71699466 71699506 -170964847 - Tigger7 DNA MER2_type -2373 114 75 1826 159 3 20 chr1 71699506 71699807 -170964546 - AluJo SINE Alu -14 298 3 1871 171 0 22 chr1 71699833 71700149 -170964204 + AluJb SINE Alu 2 310 -2 445 292 62 0 chr1 71700262 71700423 -170963930 - L1MC4 LINE L1 -1415 6627 6457 2360 113 0 0 chr1 71700600 71700911 -170963442 + AluY SINE Alu 1 311 0 777 260 36 18 chr1 71700974 71701193 -170963160 - MIR SINE MIR -37 225 3 486 262 101 13 chr1 71701238 71701387 -170962966 + MIR SINE MIR 3 164 -98 225 244 13 26 chr1 71701389 71701467 -170962886 - LTR33A LTR ERVL -3 520 444 595 76 13 0 chr1 71701903 71701982 -170962371 - MADE1 DNA Mariner 0 80 1 192 268 195 0 chr1 71702052 71702134 -170962219 + MIR SINE MIR 163 260 -2 2586 23 33 3 chr1 71702715 71703017 -170961336 - AluY SINE Alu 0 311 1 1051 253 10 44 chr1 71705602 71705859 -170958494 + L1ME3 LINE L1 5850 6097 -65 1364 156 134 52 chr1 71705859 71706128 -170958225 + AluJo SINE Alu 1 291 -21 1051 253 10 44 chr1 71706128 71706163 -170958190 + L1ME3 LINE L1 6097 6132 -30 549 312 51 24 chr1 71706197 71706450 -170957903 + MIR SINE MIR 1 260 -2 842 194 48 36 chr1 71706452 71706617 -170957736 + FAM SINE Alu 1 167 -8 341 258 57 8 chr1 71706844 71706968 -170957385 - MER117 DNA MER1_type -60 137 8 1019 251 162 34 chr1 71707506 71707976 -170956377 - L2 LINE L2 -965 2349 1820 2321 84 7 10 chr1 71708582 71708881 -170955472 - AluSx SINE Alu -14 298 1 2161 131 3 3 chr1 71709922 71710235 -170954118 + AluSq SINE Alu 1 313 0 253 296 6 35 chr1 71711037 71711209 -170953144 + (TA)n Simple_repeat Simple_repeat 1 167 0 450 364 105 9 chr1 71711270 71711421 -170952932 + L2 LINE L2 2918 3053 -219 2333 102 0 3 chr1 71711421 71711726 -170952627 - AluSg SINE Alu -2 308 5 450 364 105 9 chr1 71711726 71711898 -170952455 + L2 LINE L2 3053 3272 0 716 275 53 14 chr1 71712381 71712745 -170951608 - LTR33A LTR ERVL -8 515 122 1033 296 75 47 chr1 71712870 71713157 -170951196 - MLT1J LTR MaLR -4 507 199 490 251 100 42 chr1 71713157 71713342 -170951011 - MER112 DNA MER1_type -3 253 49 2413 95 0 0 chr1 71713342 71713646 -170950707 - AluSg SINE Alu -6 304 1 490 251 100 42 chr1 71713646 71713699 -170950654 - MER112 DNA MER1_type -207 49 1 1033 296 75 47 chr1 71713699 71713904 -170950449 - MLT1J LTR MaLR -312 199 1 303 263 62 0 chr1 71714055 71714135 -170950218 + MIR SINE MIR 108 192 -70 216 154 58 58 chr1 71714476 71714528 -170949825 + L2 LINE L2 3262 3313 0 296 96 39 0 chr1 71715158 71715210 -170949143 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 216 318 94 92 chr1 71715212 71715793 -170948560 - L2 LINE L2 0 3272 2683 1188 156 11 5 chr1 71715808 71715994 -170948359 - L1PA16 LINE L1 -11 6155 5969 1994 130 25 3 chr1 71716132 71716417 -170947936 + AluSg SINE Alu 1 291 -19 1901 109 64 0 chr1 71716978 71717269 -170947084 + AluSx SINE Alu 1 308 0 683 304 26 13 chr1 71717513 71717759 -170946594 + MIR SINE MIR 14 262 0 4582 32 0 0 chr1 71717820 71718325 -170946028 + L1PA3 LINE L1 5648 6152 -3 31 0 0 0 chr1 71718325 71718356 -170945997 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr1 71718547 71718569 -170945784 + (CA)n Simple_repeat Simple_repeat 1 22 0 206 233 0 0 chr1 71718582 71718625 -170945728 + MIR SINE MIR 220 262 0 282 264 14 0 chr1 71718665 71718737 -170945616 + L2 LINE L2 2924 2996 -317 21 36 0 0 chr1 71718739 71718767 -170945586 + AT_rich Low_complexity Low_complexity 1 28 0 1738 176 3 3 chr1 71718790 71719095 -170945258 - AluJo SINE Alu 0 305 1 1941 253 47 10 chr1 71719219 71719709 -170944644 + LTR40a LTR ERVL 10 517 -2 245 203 68 0 chr1 71719717 71719776 -170944577 - L2 LINE L2 -327 2986 2924 393 297 79 0 chr1 71719825 71719926 -170944427 + L2 LINE L2 3155 3263 -9 478 250 18 9 chr1 71720062 71720174 -170944179 + MIR SINE MIR 30 142 -66 1963 127 22 0 chr1 71720252 71720555 -170943798 + AluSx SINE Alu 3 311 0 887 178 0 61 chr1 71720762 71720959 -170943394 + AluJb SINE Alu 127 311 -1 2304 113 7 0 chr1 71721099 71721408 -170942945 - AluSx SINE Alu -1 311 1 301 247 123 0 chr1 71721791 71721872 -170942481 - L2 LINE L2 -9 3304 3214 314 258 194 0 chr1 71722436 71722560 -170941793 - MIR SINE MIR -13 249 102 240 189 87 87 chr1 71722572 71722699 -170941654 - L1MD2 LINE L1 -138 6221 6095 228 356 0 0 chr1 71722688 71722778 -170941575 + L1MC4 LINE L1 6614 6703 -1339 * 299 271 47 0 chr1 71722804 71722889 -170941464 + L1MC4 LINE L1 6614 6702 -1340 284 250 71 0 chr1 71722862 71722946 -170941407 - L1MC4 LINE L1 -1339 6703 6614 * 238 214 0 14 chr1 71722929 71722999 -170941354 - L1MCa LINE L1 -4362 2064 1996 * 325 231 0 22 chr1 71722981 71723072 -170941281 - L1MC4 LINE L1 -1340 6702 6614 374 294 14 0 chr1 71723073 71723216 -170941137 + (TA)n Simple_repeat Simple_repeat 1 145 0 233 93 70 0 chr1 71723225 71723268 -170941085 + L1MCa LINE L1 2008 2053 -4373 346 345 105 13 chr1 71723651 71723817 -170940536 + MIR SINE MIR 12 193 -15 425 264 69 42 chr1 71723928 71724072 -170940281 - MER5A DNA MER1_type -38 151 4 331 344 89 21 chr1 71724296 71724622 -170939731 - L2 LINE L2 -438 2876 2529 1178 84 0 0 chr1 71725360 71725502 -170938851 + AluSq/x SINE Alu 1 142 -170 195 378 0 14 chr1 71725627 71725701 -170938652 + MIR SINE MIR 42 114 -94 559 312 46 9 chr1 71725992 71726210 -170938143 + MIR SINE MIR 9 234 -28 307 283 94 110 chr1 71726780 71727154 -170937199 + L1M2 LINE L1 780 1147 -5702 23 0 0 0 chr1 71727290 71727313 -170937040 + GC_rich Low_complexity Low_complexity 1 23 0 345 184 0 31 chr1 71728720 71728818 -170935535 + CT-rich Low_complexity Low_complexity 3 97 0 22 35 0 0 chr1 71730585 71730614 -170933739 + AT_rich Low_complexity Low_complexity 1 29 0 221 255 75 27 chr1 71730840 71730999 -170933354 + MIR3 SINE MIR 4 207 -55 213 308 68 43 chr1 71731062 71731179 -170933174 - L2 LINE L2 -15 3298 3179 1741 157 48 14 chr1 71731682 71731976 -170932377 - AluJo SINE Alu -8 304 1 2089 84 0 7 chr1 71732049 71732324 -170932029 - AluY SINE Alu -4 307 35 270 0 0 0 chr1 71732615 71732645 -170931708 + (CAG)n Simple_repeat Simple_repeat 2 31 0 746 173 10 81 chr1 71733938 71734095 -170930258 - L1MC5 LINE L1 -30 7931 7788 2702 24 0 0 chr1 71734095 71734444 -170929909 - AluYb8 SINE Alu 0 349 1 746 173 10 81 chr1 71734444 71734482 -170929871 - L1MC5 LINE L1 -173 7788 7749 381 205 48 48 chr1 71734482 71734648 -170929705 + Charlie7 DNA MER1_type 2422 2587 -25 678 215 73 123 chr1 71735239 71735579 -170928774 - MER102b DNA MER1_type -18 323 1 286 337 112 6 chr1 71735579 71735757 -170928596 + L3 LINE CR1 1285 1481 -96 198 254 127 0 chr1 71735732 71735787 -170928566 - L2 LINE L2 -9 3263 3202 * 326 319 176 5 chr1 71736113 71736329 -170928024 - MLT1K LTR MaLR -2 586 334 314 256 98 62 chr1 71736682 71736875 -170927478 - MIR3 SINE MIR -19 189 1 28 0 0 0 chr1 71737173 71737201 -170927152 + AT_rich Low_complexity Low_complexity 1 28 0 410 297 36 21 chr1 71739844 71740036 -170924317 - L2 LINE L2 -1 3312 3118 904 141 0 15 chr1 71740072 71740207 -170924146 + FLAM_C SINE Alu 1 133 0 808 270 119 4 chr1 71740216 71740468 -170923885 + L2 LINE L2 2685 2965 -349 259 274 82 0 chr1 71740589 71740662 -170923691 + L2 LINE L2 3226 3304 -9 209 316 83 23 chr1 71740830 71740963 -170923390 - L2 LINE L2 -337 2977 2837 4226 130 30 16 chr1 71741028 71741696 -170922657 - L1MB3 LINE L1 -57 6126 5450 1733 203 43 11 chr1 71741716 71742090 -170922263 - L1ME1 LINE L1 -56 6110 5725 1424 147 0 0 chr1 71742090 71742307 -170922046 - AluJb SINE Alu 0 301 85 1741 219 52 16 chr1 71742308 71742760 -170921593 - L1ME1 LINE L1 -438 5728 5265 307 257 63 0 chr1 71742729 71742845 -170921508 - L1MB7 LINE L1 -43 6130 6002 * 591 53 0 0 chr1 71742861 71742936 -170921417 + (CA)n Simple_repeat Simple_repeat 1 75 0 21 0 0 0 chr1 71743033 71743054 -170921299 + AT_rich Low_complexity Low_complexity 1 21 0 521 327 112 27 chr1 71743231 71743730 -170920623 - L2 LINE L2 -23 3249 2683 331 322 78 0 chr1 71745347 71745462 -170918891 - L2 LINE L2 -6 3266 3143 230 300 146 23 chr1 71746097 71746227 -170918126 + MIR SINE MIR 107 252 -10 197 302 0 0 chr1 71746409 71746452 -170917901 - MIR SINE MIR -13 249 207 339 291 47 16 chr1 71747210 71747337 -170917016 + MIR SINE MIR 94 224 -38 2020 136 45 48 chr1 71747802 71748178 -170916175 - THE1C LTR MaLR 0 375 1 1437 158 8 26 chr1 71748196 71748430 -170915923 - AluJb SINE Alu -81 231 2 208 135 0 0 chr1 71748432 71748469 -170915884 + (T)n Simple_repeat Simple_repeat 1 37 0 254 316 58 25 chr1 71749333 71749523 -170914830 + L2 LINE L2 2999 3272 0 197 347 13 0 chr1 71751339 71751414 -170912939 - MIR SINE MIR -87 121 46 202 178 89 0 chr1 71752937 71752982 -170911371 + MIR SINE MIR 90 138 -124 249 108 0 0 chr1 71753374 71753411 -170910942 + (A)n Simple_repeat Simple_repeat 1 37 0 190 311 74 67 chr1 71753759 71753894 -170910459 - L2 LINE L2 0 3272 3137 2283 104 0 3 chr1 71754355 71754652 -170909701 + AluSx SINE Alu 2 297 -15 200 411 18 9 chr1 71754993 71755105 -170909248 - MIR SINE MIR -69 139 27 1257 229 157 18 chr1 71756026 71756472 -170907881 + Charlie4a DNA MER1_type 1 508 0 357 279 23 16 chr1 71756622 71756751 -170907602 - MLT1I LTR MaLR -201 208 79 731 135 0 178 chr1 71757082 71757245 -170907108 + FLAM_C SINE Alu 2 135 -8 288 0 0 0 chr1 71757245 71757277 -170907076 + (GA)n Simple_repeat Simple_repeat 2 33 0 2225 105 3 3 chr1 71757278 71757572 -170906781 + AluSx SINE Alu 3 296 -16 25 0 0 0 chr1 71757629 71757654 -170906699 + AT_rich Low_complexity Low_complexity 1 25 0 255 189 0 0 chr1 71759037 71759090 -170905263 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 0 0 0 chr1 71759905 71759926 -170904427 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1911 162 0 3 chr1 71760544 71760840 -170903513 - AluJb SINE Alu -17 295 1 207 0 0 0 chr1 71761890 71761913 -170902440 + (GGGGA)n Simple_repeat Simple_repeat 3 25 0 28 0 0 0 chr1 71762037 71762065 -170902288 + GC_rich Low_complexity Low_complexity 1 28 0 243 61 0 0 chr1 71762300 71762333 -170902020 + (CCCCG)n Simple_repeat Simple_repeat 5 37 0 182 318 16 16 chr1 71762661 71762724 -170901629 - L2 LINE L2 -7 3265 3203 286 231 141 0 chr1 71762772 71762850 -170901503 - MIR SINE MIR -6 256 168 630 249 88 16 chr1 71762861 71763054 -170901299 - MIR SINE MIR -16 246 40 248 262 196 28 chr1 71764221 71764328 -170900025 + MIR SINE MIR 16 140 -68 2370 120 117 28 chr1 71764365 71764758 -170899595 - MSTA LTR MaLR 0 428 1 358 232 37 0 chr1 71764927 71765009 -170899344 + MIR SINE MIR 82 166 -96 202 284 0 91 chr1 71766551 71766639 -170897714 + MIR SINE MIR 34 113 -95 180 146 146 24 chr1 71767695 71767736 -170896617 - MIR SINE MIR -60 148 103 479 308 77 15 chr1 71767961 71768156 -170896197 - L3 LINE CR1 -3 1574 1368 312 284 176 39 chr1 71768225 71768429 -170895924 + MIR SINE MIR 6 237 -25 218 210 50 60 chr1 71768438 71768538 -170895815 - MIR SINE MIR -49 213 115 2255 123 0 0 chr1 71768568 71768876 -170895477 + AluSx SINE Alu 1 308 -4 232 317 77 19 chr1 71769468 71769572 -170894781 + MIR SINE MIR 30 139 -123 898 195 144 20 chr1 71769613 71769808 -170894545 - MER20 DNA MER1_type 0 219 1 823 300 64 24 chr1 71770143 71770440 -170893913 - MER102b DNA MER1_type -32 309 1 268 233 182 50 chr1 71771181 71771340 -170893013 - L3 LINE CR1 -1088 489 310 258 271 0 0 chr1 71772906 71772954 -170891399 + L2 LINE L2 3210 3257 -15 253 268 37 24 chr1 71773014 71773096 -170891257 - MIR SINE MIR -31 231 149 595 252 114 19 chr1 71773378 71773588 -170890765 + MIR SINE MIR 33 262 0 272 135 0 0 chr1 71773629 71773666 -170890687 - U2 snRNA snRNA -151 37 1 627 242 51 125 chr1 71773669 71774078 -170890275 - L2 LINE L2 -14 3299 2921 1022 81 0 0 chr1 71774747 71774871 -170889482 - L1PA8 LINE L1 -5 6167 6044 226 232 50 71 chr1 71775039 71775138 -170889215 + MIR SINE MIR 27 123 -85 223 297 16 16 chr1 71775858 71775922 -170888431 + MIR SINE MIR 89 152 -56 286 299 131 7 chr1 71777215 71777352 -170887001 - MIR SINE MIR -1 261 108 1330 227 70 14 chr1 71777416 71777879 -170886474 - MLT1E3 LTR MaLR -2 622 126 1482 194 35 0 chr1 71777916 71778226 -170886127 - L1MB7 LINE L1 -272 5912 5592 * 2455 181 64 4 chr1 71778215 71778728 -170885625 - L1MB7 LINE L1 -771 5375 4832 2080 95 21 14 chr1 71778765 71779050 -170885303 - AluSx SINE Alu -12 300 14 515 169 44 0 chr1 71779077 71779191 -170885162 + L1MD3 LINE L1 6236 7980 0 831 203 71 32 chr1 71779526 71779807 -170884546 + L1MC5 LINE L1 7612 7903 -58 23 0 0 0 chr1 71780723 71780746 -170883607 + AT_rich Low_complexity Low_complexity 1 23 0 214 296 0 14 chr1 71780918 71780989 -170883364 + MIR SINE MIR 81 150 -112 201 39 0 0 chr1 71781237 71781263 -170883090 + (ATG)n Simple_repeat Simple_repeat 2 27 0 495 261 65 38 chr1 71781272 71781456 -170882897 - MIR SINE MIR -22 240 52 21 0 0 0 chr1 71781584 71781605 -170882748 + AT_rich Low_complexity Low_complexity 1 21 0 244 307 27 0 chr1 71781860 71781935 -170882418 + MIR3 SINE MIR 125 201 -7 21 36 0 0 chr1 71784955 71784983 -170879370 + AT_rich Low_complexity Low_complexity 1 28 0 474 283 192 18 chr1 71786006 71786225 -170878128 - MIR SINE MIR 0 262 6 2520 73 0 0 chr1 71787046 71787348 -170877005 + AluSx SINE Alu 2 303 -9 183 42 0 0 chr1 71787380 71787404 -170876949 + (T)n Simple_repeat Simple_repeat 1 24 0 336 24 0 0 chr1 71787952 71787993 -170876360 + (TG)n Simple_repeat Simple_repeat 2 42 0 302 260 67 19 chr1 71788734 71788838 -170875515 - L2 LINE L2 -19 3294 3186 328 314 81 52 chr1 71788906 71789216 -170875137 - L2 LINE L2 -280 3033 2708 237 159 0 0 chr1 71789333 71789377 -170874976 + (TAG)n Simple_repeat Simple_repeat 2 45 0 1893 171 0 0 chr1 71789529 71789816 -170874537 + AluSx SINE Alu 1 287 -25 2198 93 0 7 chr1 71790208 71790497 -170873856 - AluY SINE Alu -11 300 14 2314 110 0 0 chr1 71790502 71790801 -170873552 - AluSx SINE Alu -13 299 1 283 314 86 14 chr1 71791044 71791184 -170873169 + L2 LINE L2 3102 3251 -21 292 252 53 73 chr1 71791344 71791495 -170872858 + MIR SINE MIR 35 182 -80 2243 120 3 0 chr1 71791785 71792085 -170872268 - AluSq SINE Alu -12 301 1 274 254 46 54 chr1 71792245 71792375 -170871978 + MER5A DNA MER1_type 59 187 -2 591 189 37 30 chr1 71792499 71792663 -170871690 - L1MB7 LINE L1 -17 6167 6003 246 322 62 34 chr1 71792672 71792818 -170871535 - MIR SINE MIR -110 152 3 187 252 224 9 chr1 71793046 71793153 -170871200 + MIR3 SINE MIR 31 160 -48 181 271 42 0 chr1 71793390 71793438 -170870915 - MIR SINE MIR -131 131 82 486 210 191 13 chr1 71794202 71794359 -170869994 - MIR SINE MIR -13 249 65 24 32 0 0 chr1 71794815 71794846 -170869507 + AT_rich Low_complexity Low_complexity 1 31 0 278 293 52 35 chr1 71794981 71795097 -170869256 - MIR3 SINE MIR -36 172 55 181 227 0 23 chr1 71795792 71795836 -170868517 - L2 LINE L2 0 3313 3271 466 258 25 0 chr1 71796100 71796220 -170868133 + L2 LINE L2 3191 3313 0 183 42 0 0 chr1 71797433 71797457 -170866896 + (TG)n Simple_repeat Simple_repeat 1 24 0 1423 187 43 12 chr1 71797983 71798103 -170866250 + AluJo SINE Alu 1 116 -196 211 28 56 0 chr1 71798103 71798139 -170866214 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1423 187 43 12 chr1 71798139 71798275 -170866078 + AluJo SINE Alu 116 265 -47 322 173 160 0 chr1 71798506 71798581 -170865772 + MIR SINE MIR 175 261 -1 24 32 0 0 chr1 71799000 71799031 -170865322 + AT_rich Low_complexity Low_complexity 1 31 0 417 312 108 11 chr1 71799113 71799299 -170865054 + MIR SINE MIR 9 212 -50 234 105 0 0 chr1 71799353 71799391 -170864962 + (CA)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr1 71799398 71799420 -170864933 + AT_rich Low_complexity Low_complexity 1 22 0 1593 176 40 7 chr1 71799649 71799774 -170864579 + AluJo SINE Alu 1 120 -192 249 33 0 0 chr1 71799774 71799804 -170864549 + (TA)n Simple_repeat Simple_repeat 2 31 0 1593 176 40 7 chr1 71799804 71799956 -170864397 + AluJo SINE Alu 120 287 -25 207 0 0 0 chr1 71800244 71800267 -170864086 + (T)n Simple_repeat Simple_repeat 1 23 0 418 149 0 0 chr1 71800295 71800362 -170863991 - AluS SINE Alu -246 67 1 2167 212 58 17 chr1 71801602 71802186 -170862167 - L1ME3A LINE L1 -10 6143 5536 24 77 0 0 chr1 71802362 71802414 -170861939 + AT_rich Low_complexity Low_complexity 1 52 0 1703 191 7 3 chr1 71802700 71803009 -170861344 - AluJb SINE Alu 0 312 3 222 231 22 88 chr1 71803493 71803584 -170860769 + MIR SINE MIR 122 206 -56 2178 131 0 3 chr1 71803731 71804044 -170860309 - AluSq SINE Alu -1 312 1 724 199 32 93 chr1 71805001 71805247 -170859106 - MER46C DNA MER2_type -107 231 1 387 282 103 0 chr1 71805328 71805445 -170858908 + MIR SINE MIR 11 139 -123 563 231 60 8 chr1 71805526 71805660 -170858693 + MIR SINE MIR 114 254 -8 22 0 0 0 chr1 71806167 71806189 -170858164 + AT_rich Low_complexity Low_complexity 1 22 0 426 287 83 48 chr1 71807340 71807570 -170856783 + MIR SINE MIR 19 256 -6 188 159 0 23 chr1 71807577 71807621 -170856732 + T-rich Low_complexity Low_complexity 1 43 0 244 351 121 11 chr1 71808628 71808802 -170855551 - MIR SINE MIR -17 245 53 1860 165 0 28 chr1 71808835 71809156 -170855197 - AluJo SINE Alu 0 312 1 237 332 112 51 chr1 71809235 71809548 -170854805 - L3 LINE CR1 -110 1467 1136 205 238 0 48 chr1 71809829 71809892 -170854461 - MIR SINE MIR -71 191 132 22 0 0 0 chr1 71809982 71810004 -170854349 + AT_rich Low_complexity Low_complexity 1 22 0 364 292 74 5 chr1 71810200 71810402 -170853951 - L1ME3A LINE L1 -224 5946 5731 1155 131 11 11 chr1 71810403 71810579 -170853774 - FRAM SINE Alu -8 168 1 271 279 86 49 chr1 71810876 71811120 -170853233 - L1ME3A LINE L1 -650 5497 5242 524 205 211 6 chr1 71811120 71811286 -170853067 + MER3 DNA MER1_type 1 200 -9 1720 189 3 3 chr1 71811355 71811667 -170852686 - AluJb SINE Alu 0 312 1 428 240 77 107 chr1 71811734 71811790 -170852563 - L1ME3A LINE L1 -1078 5051 4995 2086 133 0 3 chr1 71811790 71812098 -170852255 - AluSx SINE Alu -5 307 1 428 240 77 107 chr1 71812098 71812409 -170851944 - L1ME3A LINE L1 -1134 4995 4697 2096 47 0 12 chr1 71813261 71813514 -170850839 + AluY SINE Alu 48 297 -14 23 0 0 0 chr1 71813743 71813766 -170850587 + AT_rich Low_complexity Low_complexity 1 23 0 999 279 114 25 chr1 71813903 71814137 -170850216 + L2 LINE L2 1573 1785 -1529 2098 118 6 25 chr1 71814137 71814474 -170849879 - AluSg SINE Alu 0 310 1 999 279 114 25 chr1 71814474 71814676 -170849677 + L2 LINE L2 1785 2048 -1266 269 311 71 44 chr1 71814652 71814877 -170849476 + L2 LINE L2 2915 3145 -168 * 6460 77 16 8 chr1 71814910 71816039 -170848314 + L1PA14 LINE L1 5027 6161 0 436 204 63 155 chr1 71816056 71816404 -170847949 - L1ME3A LINE L1 -2509 3620 3305 358 156 13 47 chr1 71816412 71816523 -170847830 + L1ME3A LINE L1 3149 3259 -2870 2059 221 127 25 chr1 71816546 71817505 -170846848 - L1ME3A LINE L1 -2928 3201 2145 1117 264 68 66 chr1 71817599 71817956 -170846397 - L1MEd LINE L1 -4382 1928 1573 1632 152 34 50 chr1 71817956 71818253 -170846100 + AluJo SINE Alu 9 300 -12 1117 264 68 66 chr1 71818253 71818668 -170845685 - L1MEd LINE L1 -4737 1573 1117 4120 211 27 4 chr1 71818797 71819787 -170844566 - L1 LINE L1 -1315 4831 3819 295 293 136 3 chr1 71820760 71820942 -170843411 + MIR SINE MIR 3 205 -57 354 295 29 92 chr1 71821136 71821309 -170843044 + MIR SINE MIR 87 248 -14 231 313 0 0 chr1 71821317 71821381 -170842972 + CT-rich Low_complexity Low_complexity 4 67 0 597 191 88 20 chr1 71821609 71821756 -170842597 - FRAM SINE Alu -19 157 1 200 301 212 18 chr1 71821883 71821996 -170842357 - L2 LINE L2 -1 3271 3137 1062 106 6 82 chr1 71822381 71822551 -170841802 - AluSc SINE Alu -152 157 1 933 225 136 35 chr1 71822551 71822956 -170841397 - L1MEd LINE L1 -5215 904 459 253 213 253 0 chr1 71823835 71823910 -170840443 + MER34 LTR ERV1 3 96 -446 818 196 109 62 chr1 71823912 71824233 -170840120 + LTR48 LTR ERV1 150 485 -302 276 187 102 44 chr1 71824272 71824441 -170839912 + LTR48 LTR ERV1 378 542 0 182 188 0 0 chr1 71825131 71825163 -170839190 + L2 LINE L2 3241 3272 0 357 280 40 40 chr1 71825540 71825715 -170838638 - MIR SINE MIR -41 221 47 732 278 43 43 chr1 71825836 71826160 -170838193 + L2 LINE L2 2990 3313 0 217 336 112 9 chr1 71826185 71826292 -170838061 - MIR SINE MIR -123 139 22 21 36 0 0 chr1 71826730 71826758 -170837595 + AT_rich Low_complexity Low_complexity 1 28 0 557 337 48 11 chr1 71827317 71827504 -170836849 - MIR SINE MIR -54 208 15 225 0 0 0 chr1 71827991 71828016 -170836337 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2238 92 3 0 chr1 71828737 71829052 -170835301 - AluSp SINE Alu 0 316 1 236 172 0 35 chr1 71829076 71829134 -170835219 + A-rich Low_complexity Low_complexity 1 56 0 225 180 0 49 chr1 71831589 71831650 -170832703 - L2 LINE L2 -1 3271 3214 1457 167 22 85 chr1 71832920 71833285 -170831068 + MLT1A2 LTR MaLR 4 345 -29 330 271 157 18 chr1 71833594 71833760 -170830593 + MIR SINE MIR 74 262 0 193 247 49 49 chr1 71833863 71833944 -170830409 - L2 LINE L2 -211 3061 2981 293 291 104 55 chr1 71833987 71834184 -170830169 + MIR SINE MIR 16 216 -46 524 328 61 9 chr1 71834486 71834716 -170829637 - MIR SINE MIR -7 255 16 386 246 93 8 chr1 71834991 71835109 -170829244 - MIR SINE MIR -71 191 64 205 205 0 0 chr1 71836478 71836517 -170827836 + MIR SINE MIR 109 147 -115 1584 162 0 8 chr1 71836818 71837077 -170827276 - AluJo SINE Alu -55 257 1 23 78 0 0 chr1 71837153 71837204 -170827149 + AT_rich Low_complexity Low_complexity 1 51 0 758 288 105 0 chr1 71837318 71837547 -170826806 + MIR SINE MIR 2 254 -8 218 268 171 0 chr1 71838009 71838091 -170826262 + MIR SINE MIR 13 108 -154 1645 195 164 29 chr1 71838305 71838823 -170825530 - MLT1G LTR MaLR -2 588 1 744 237 138 0 chr1 71838901 71839125 -170825228 - MER58 DNA MER1_type -55 2365 32 312 243 27 0 chr1 71839585 71839659 -170824694 - L2 LINE L2 -9 3304 3229 596 182 0 0 chr1 71840188 71840298 -170824055 + L1PA15 LINE L1 6056 6165 0 761 157 92 22 chr1 71840499 71840684 -170823669 - MER20 DNA MER1_type 0 219 22 257 274 82 14 chr1 71841444 71841517 -170822836 - MER91C DNA MER1_type -28 112 35 302 289 53 53 chr1 71842684 71842871 -170821482 + MIR SINE MIR 12 198 -64 290 361 76 7 chr1 71843179 71843323 -170821030 + MIR SINE MIR 32 185 -77 2543 106 14 6 chr1 71843440 71843800 -170820553 - THE1B LTR MaLR -1 363 1 1011 172 5 35 chr1 71843981 71844184 -170820169 + MER20 DNA MER1_type 23 219 0 363 241 9 35 chr1 71844876 71844992 -170819361 + L1ME LINE L1 5701 5813 -308 1988 134 0 0 chr1 71845900 71846184 -170818169 - AluSx SINE Alu -17 295 12 491 164 115 8 chr1 71846360 71846482 -170817871 + MIR SINE MIR 49 183 -79 200 301 48 24 chr1 71846679 71846762 -170817591 + L3 LINE CR1 1492 1576 -1 21 0 0 0 chr1 71847546 71847567 -170816786 + AT_rich Low_complexity Low_complexity 1 21 0 660 282 39 67 chr1 71847658 71847988 -170816365 + MER102b DNA MER1_type 21 341 0 1648 101 171 0 chr1 71848252 71848509 -170815844 - AluSx SINE Alu -1 301 1 1496 209 66 20 chr1 71849265 71849305 -170815048 - MLT2D LTR ERVL 0 414 377 228 67 0 0 chr1 71849305 71849335 -170815018 + (TG)n Simple_repeat Simple_repeat 2 31 0 1496 209 66 20 chr1 71849335 71849687 -170814666 - MLT2D LTR ERVL -37 377 4 2409 56 0 50 chr1 71849857 71850176 -170814177 + AluY SINE Alu 1 303 -8 270 0 0 0 chr1 71850491 71850521 -170813832 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 493 254 57 0 chr1 71850692 71850814 -170813539 + MIR3 SINE MIR 59 187 -21 183 42 0 0 chr1 71850847 71850871 -170813482 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 311 248 120 51 chr1 71851313 71851430 -170812923 + L2 LINE L2 3187 3311 -2 196 299 91 39 chr1 71852142 71852219 -170812134 - L2 LINE L2 -37 3235 3155 181 300 20 0 chr1 71852369 71852419 -170811934 - L2 LINE L2 -323 2990 2940 243 306 91 48 chr1 71852796 71852982 -170811371 - L2 LINE L2 -833 2481 2288 284 269 99 71 chr1 71853721 71853827 -170810526 - MIR3 SINE MIR -27 181 86 2177 103 0 0 chr1 71853827 71854109 -170810244 + AluSq SINE Alu 25 306 -7 284 269 99 71 chr1 71854109 71854198 -170810155 - MIR3 SINE MIR -122 86 1 180 241 0 52 chr1 71854921 71854979 -170809374 + L3 LINE CR1 1507 1561 -16 255 342 110 32 chr1 71855134 71855289 -170809064 - L2 LINE L2 -4 3268 3102 28 29 0 0 chr1 71858004 71858039 -170806314 + AT_rich Low_complexity Low_complexity 1 35 0 388 163 0 38 chr1 71858041 71858121 -170806232 + MLT1A1 LTR MaLR 1 77 -288 181 130 0 37 chr1 71858135 71858189 -170806164 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1464 170 25 5 chr1 71858189 71858453 -170805900 + MLT1A1 LTR MaLR 82 457 0 475 259 18 8 chr1 71859547 71859681 -170804672 + MER5A DNA MER1_type 36 181 -8 329 329 36 96 chr1 71859804 71860084 -170804269 - L2 LINE L2 -25 3247 2985 749 208 98 0 chr1 71860105 71860288 -170804065 - MER3 DNA MER1_type -8 201 1 710 188 71 0 chr1 71860323 71860477 -170803876 + MER58A DNA MER1_type 43 207 -17 267 236 97 0 chr1 71860636 71860708 -170803645 + L3 LINE CR1 1113 1191 -386 181 167 50 117 chr1 71861279 71861339 -170803014 - L2 LINE L2 -2 3311 3256 302 335 140 15 chr1 71861418 71861618 -170802735 - MIR SINE MIR -32 230 6 2550 59 7 0 chr1 71862327 71862631 -170801722 - AluY SINE Alu -5 306 1 200 280 0 40 chr1 71863110 71863185 -170801168 - MIR3 SINE MIR -23 185 114 2191 114 0 0 chr1 71863883 71864173 -170800180 - AluSg SINE Alu -15 295 6 2267 118 7 0 chr1 71864182 71864487 -170799866 - AluSx SINE Alu 0 312 6 303 281 0 0 chr1 71865112 71865176 -170799177 - L2 LINE L2 -527 2787 2724 3847 283 88 70 chr1 71865263 71865334 -170799019 - L2 LINE L2 -6 3307 3239 327 49 0 0 chr1 71865334 71865375 -170798978 + (CA)n Simple_repeat Simple_repeat 2 42 0 3847 283 88 70 chr1 71865375 71867215 -170797138 - L2 LINE L2 -74 3239 1340 200 289 0 0 chr1 71868064 71868116 -170796237 + CT-rich Low_complexity Low_complexity 4 55 0 200 225 0 0 chr1 71868781 71868821 -170795532 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 200 167 21 0 chr1 71868987 71869035 -170795318 + (TA)n Simple_repeat Simple_repeat 1 49 0 2793 79 11 19 chr1 71869195 71869573 -170794780 - THE1C LTR MaLR 0 375 1 8658 109 13 104 chr1 71869573 71871309 -170793044 - THE1C-int LTR MaLR 0 1580 2 1504 176 75 31 chr1 71871311 71871670 -170792683 - THE1C LTR MaLR 0 375 1 4754 107 13 0 chr1 71872084 71872797 -170791556 + Tigger1 DNA MER2_type 1214 1935 -483 206 103 51 0 chr1 71872817 71872856 -170791497 + A-rich Low_complexity Low_complexity 2 42 0 725 173 8 0 chr1 71872857 71872990 -170791363 + Tigger1 DNA MER2_type 2284 2417 -1 207 390 65 23 chr1 71873051 71873359 -170790994 + L2 LINE L2 1945 2265 -1049 194 300 110 66 chr1 71874226 71874453 -170789900 + L2 LINE L2 2530 2766 -548 371 248 32 8 chr1 71874752 71874877 -170789476 - LTR16A LTR ERVL -87 363 236 332 295 0 21 chr1 71874968 71875063 -170789290 + L2 LINE L2 3180 3272 0 225 330 184 0 chr1 71875409 71875518 -170788835 - MIR SINE MIR -62 146 18 253 316 126 17 chr1 71875563 71875737 -170788616 + L2 LINE L2 2291 2483 -831 226 260 149 78 chr1 71876556 71876600 -170787753 + MER5A DNA MER1_type 22 61 -128 240 59 0 0 chr1 71876600 71876634 -170787719 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 226 260 149 78 chr1 71876634 71876743 -170787610 + MER5A DNA MER1_type 61 186 -3 2232 124 0 3 chr1 71877260 71877558 -170786795 + AluSq SINE Alu 1 297 -16 215 135 269 19 chr1 71877559 71877611 -170786742 + MIR SINE MIR 105 169 -93 281 234 104 13 chr1 71877917 71877994 -170786359 + MIR SINE MIR 163 246 -16 209 244 0 0 chr1 71879200 71879245 -170785108 + L2 LINE L2 3255 3299 -14 365 320 69 49 chr1 71879266 71879469 -170784884 + MIR SINE MIR 20 226 -36 879 231 120 42 chr1 71879903 71880353 -170784000 + Charlie4a DNA MER1_type 17 501 -7 395 288 154 43 chr1 71880921 71881417 -170782936 - L2 LINE L2 -94 3219 2660 242 286 0 14 chr1 71881413 71881483 -170782870 - MIR SINE MIR -115 93 25 * 197 320 90 20 chr1 71882189 71882289 -170782064 + MIR SINE MIR 125 231 -31 464 207 63 0 chr1 71882298 71882409 -170781944 - L1MA10 LINE L1 0 6334 6217 26 0 0 0 chr1 71882550 71882576 -170781777 + AT_rich Low_complexity Low_complexity 1 26 0 2200 122 0 0 chr1 71882583 71882877 -170781476 + AluSx SINE Alu 1 294 -18 295 296 45 45 chr1 71883024 71883156 -170781197 - L2 LINE L2 -65 3207 3076 218 276 58 11 chr1 71883206 71883293 -170781060 - L2 LINE L2 -12 3260 3170 379 276 72 28 chr1 71884075 71884256 -170780097 + MIR SINE MIR 7 195 -67 890 224 51 0 chr1 71884374 71884570 -170779783 + MER58A DNA MER1_type 19 224 0 1816 110 0 60 chr1 71884660 71884812 -170779541 + L1PB4 LINE L1 5893 6022 -134 2311 112 0 0 chr1 71884812 71885115 -170779238 + AluSx SINE Alu 5 307 -5 1816 110 0 60 chr1 71885115 71885243 -170779110 + L1PB4 LINE L1 6022 6156 0 1933 160 0 20 chr1 71886588 71886894 -170777459 + AluJb SINE Alu 1 300 -12 204 268 122 37 chr1 71886942 71887024 -170777329 - L2 LINE L2 -43 3270 3182 182 329 105 0 chr1 71887179 71887255 -170777098 + MIR3 SINE MIR 3 86 -122 316 281 97 56 chr1 71887258 71887454 -170776899 - L2 LINE L2 0 3313 3110 180 289 19 0 chr1 71887474 71887526 -170776827 + MIR SINE MIR 102 154 -108 193 301 32 75 chr1 71887816 71887909 -170776444 + L2 LINE L2 3224 3312 -1 530 298 107 4 chr1 71888085 71888310 -170776043 + MIR SINE MIR 2 249 -13 2160 85 67 0 chr1 71889764 71890047 -170774306 - AluSq SINE Alu -11 302 1 204 354 110 0 chr1 71890352 71890479 -170773874 - L3b LINE CR1 -340 1243 1103 216 97 0 0 chr1 71891720 71891751 -170772602 + (A)n Simple_repeat Simple_repeat 1 31 0 1524 145 136 141 chr1 71892289 71892709 -170771644 - MER47B DNA MER2_type 0 418 1 330 45 0 0 chr1 71893820 71893864 -170770489 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1577 196 14 7 chr1 71893866 71894147 -170770206 - AluJb SINE Alu -28 284 2 2322 98 0 10 chr1 71894176 71894481 -170769872 + AluSg SINE Alu 1 302 -8 595 189 117 84 chr1 71895027 71895310 -170769043 - MLT1E1 LTR MaLR -211 382 103 329 183 33 0 chr1 71895287 71895347 -170769006 - MLT1E1 LTR MaLR -440 153 92 * 837 202 65 69 chr1 71895688 71895935 -170768418 - MER102b DNA MER1_type -1 340 95 190 254 153 0 chr1 71896427 71896486 -170767867 + MIR3 SINE MIR 111 178 -30 210 333 0 0 chr1 71896698 71896755 -170767598 - L2 LINE L2 -5 3308 3252 1444 238 135 11 chr1 71898217 71898729 -170765624 - MLT1F1 LTR MaLR 0 567 1 2030 123 11 3 chr1 71898856 71899140 -170765213 + AluSx SINE Alu 1 286 -26 363 23 0 0 chr1 71899151 71899195 -170765158 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 0 0 0 chr1 71899204 71899229 -170765124 + (TA)n Simple_repeat Simple_repeat 2 26 0 216 321 0 0 chr1 71899299 71899352 -170765001 - L3 LINE CR1 -99 1478 1426 692 257 45 25 chr1 71899572 71899774 -170764579 - MIR SINE MIR -55 207 2 399 228 50 10 chr1 71900872 71900973 -170763380 + MIR SINE MIR 109 213 -49 2293 101 13 3 chr1 71901225 71901531 -170762822 + AluSc SINE Alu 1 309 0 341 330 68 23 chr1 71901627 71901803 -170762550 - MER5A DNA MER1_type 0 189 6 * 504 252 96 69 chr1 71901798 71902016 -170762337 + MIR SINE MIR 21 244 -18 2266 61 0 7 chr1 71902017 71902295 -170762058 + AluY SINE Alu 1 276 -35 242 239 113 28 chr1 71902519 71902590 -170761763 + L2 LINE L2 3147 3223 -49 212 225 0 0 chr1 71902697 71902737 -170761616 + GA-rich Low_complexity Low_complexity 1 40 0 311 320 120 34 chr1 71902737 71902912 -170761441 - L2 LINE L2 -12 3260 3071 1640 152 21 67 chr1 71903258 71903278 -170761075 + L1MA3 LINE L1 5933 5952 -353 2082 136 3 0 chr1 71903278 71903579 -170760774 + AluSx SINE Alu 1 302 -10 1640 152 21 67 chr1 71903579 71903947 -170760406 + L1MA3 LINE L1 5952 6303 -2 894 278 89 31 chr1 71903953 71904454 -170759899 - MLT2E LTR ERVL -54 574 4 2010 118 10 14 chr1 71904910 71905199 -170759154 + AluSx SINE Alu 2 289 -23 775 267 39 22 chr1 71956101 71956333 -170708020 + MIR SINE MIR 8 243 -19 1510 200 0 14 chr1 71957560 71957835 -170706518 - AluJo SINE Alu -39 273 3 21 0 0 0 chr1 71958391 71958412 -170705941 + AT_rich Low_complexity Low_complexity 1 21 0 299 273 114 23 chr1 71958556 71958688 -170705665 + MIR3 SINE MIR 38 181 -27 564 223 115 19 chr1 71958689 71958846 -170705507 + MIR SINE MIR 13 184 -78 278 222 14 14 chr1 71959268 71959340 -170705013 - LTR67 LTR ERVL 0 557 486 2093 100 0 56 chr1 71959729 71960049 -170704304 + AluSx SINE Alu 1 302 -10 730 242 79 21 chr1 71960428 71960668 -170703685 + MER112 DNA MER1_type 6 259 -1 210 314 78 0 chr1 71961053 71961155 -170703198 + L3 LINE CR1 661 770 -807 228 266 229 0 chr1 71961317 71961426 -170702927 + L3 LINE CR1 994 1127 -450 28 0 0 0 chr1 71962007 71962035 -170702318 + AT_rich Low_complexity Low_complexity 1 28 0 428 0 0 19 chr1 71963063 71963116 -170701237 + (TAA)n Simple_repeat Simple_repeat 2 53 0 189 311 67 0 chr1 71963324 71963369 -170700984 - L2 LINE L2 -14 3258 3211 1036 171 0 69 chr1 71963556 71963773 -170700580 - AluJb SINE Alu -24 288 87 429 241 35 43 chr1 71963778 71963894 -170700459 - MIR SINE MIR -111 151 37 492 214 71 14 chr1 71964723 71964863 -170699490 - MER103 DNA DNA -9 157 10 22 0 0 0 chr1 71964863 71964885 -170699468 + AT_rich Low_complexity Low_complexity 1 22 0 2098 130 3 0 chr1 71967281 71967574 -170696779 + AluSx SINE Alu 1 294 -18 207 0 0 0 chr1 71968616 71968639 -170695714 + (T)n Simple_repeat Simple_repeat 1 23 0 282 333 61 55 chr1 71969569 71969734 -170694619 - L2 LINE L2 -196 3076 2911 557 151 161 0 chr1 71971077 71971170 -170693183 + Tigger3(Golem) DNA MER2_type 1 108 -2921 484 16 0 32 chr1 71971161 71971224 -170693129 + Tigger3(Golem) DNA MER2_type 2277 2337 -692 * 551 133 0 11 chr1 71971224 71971314 -170693039 - AluSg/x SINE Alu -3 307 219 288 154 0 0 chr1 71971407 71971459 -170692894 + T-rich Low_complexity Low_complexity 1 52 0 4109 123 19 47 chr1 71971467 71971871 -170692482 + Tigger3(Golem) DNA MER2_type 2328 2705 -323 2369 99 3 0 chr1 71971871 71972183 -170692170 - AluSp SINE Alu 0 313 1 4109 123 19 47 chr1 71972183 71972499 -170691854 + Tigger3(Golem) DNA MER2_type 2705 3028 0 1290 115 40 75 chr1 71972717 71972943 -170691410 + AluJb SINE Alu 86 303 -9 193 239 43 0 chr1 71973029 71973075 -170691278 - L2 LINE L2 -95 3218 3171 348 240 94 21 chr1 71974271 71974367 -170689986 + L2 LINE L2 3162 3264 -8 268 300 0 0 chr1 71974886 71974946 -170689407 - L2 LINE L2 -25 3247 3188 21 0 0 0 chr1 71974987 71975008 -170689345 + AT_rich Low_complexity Low_complexity 1 21 0 320 26 0 0 chr1 71975981 71976020 -170688333 - 5S rRNA rRNA -30 91 53 281 284 166 36 chr1 71976213 71976491 -170687862 + L2 LINE L2 2452 2765 -549 280 302 92 86 chr1 71976591 71976929 -170687424 + L2 LINE L2 2931 3270 -2 314 279 81 27 chr1 71976959 71977070 -170687283 + L2 LINE L2 3148 3264 -8 267 200 0 0 chr1 71977511 71977566 -170686787 + MIR SINE MIR 88 142 -120 2074 134 3 7 chr1 71980415 71980721 -170683632 - AluSx SINE Alu -7 305 1 1648 168 58 0 chr1 71981493 71981784 -170682569 + AluJb SINE Alu 3 310 -2 207 0 0 0 chr1 71981970 71981993 -170682360 + (CA)n Simple_repeat Simple_repeat 2 24 0 672 243 43 28 chr1 71982077 71982306 -170682047 - MER106B DNA MER1_type 0 236 1 373 274 30 15 chr1 71982900 71983035 -170681318 + MLT1L LTR MaLR 467 603 -12 307 321 23 87 chr1 71983041 71983433 -170680920 - L2 LINE L2 -129 3184 2818 826 176 122 0 chr1 71983462 71983593 -170680760 - FAM SINE Alu -38 147 1 272 329 210 31 chr1 71983608 71983927 -170680426 - L2 LINE L2 -615 2699 2324 189 339 0 0 chr1 71983983 71984048 -170680305 - MIR SINE MIR -15 247 183 1775 112 94 14 chr1 71984517 71984793 -170679560 - AluSg SINE Alu 0 310 13 26 0 0 0 chr1 71984962 71984988 -170679365 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 71985184 71985209 -170679144 + AT_rich Low_complexity Low_complexity 1 25 0 2053 119 0 7 chr1 71985604 71985918 -170678435 + AluSq SINE Alu 1 312 0 272 317 14 76 chr1 71986556 71986637 -170677716 + L2 LINE L2 2566 2636 -678 2107 129 6 10 chr1 71986637 71986948 -170677405 - AluSx SINE Alu -2 310 1 272 317 14 76 chr1 71986948 71987011 -170677342 + L2 LINE L2 2636 2701 -613 449 171 0 0 chr1 71987052 71987134 -170677219 - L1MB5 LINE L1 -21 6153 6072 1350 212 3 70 chr1 71987134 71987479 -170676874 + MER72 LTR ERV1 1 322 -400 1735 175 0 40 chr1 71987508 71987833 -170676520 - AluJo SINE Alu 0 312 1 261 268 6 122 chr1 71987842 71988006 -170676347 + L2 LINE L2 2898 3042 -271 2367 90 3 0 chr1 71988220 71988521 -170675832 - AluSx SINE Alu -10 302 1 192 338 162 7 chr1 71989089 71989225 -170675128 + L2 LINE L2 3116 3272 0 4097 87 33 12 chr1 71989267 71989845 -170674508 - L1MA3 LINE L1 0 6305 5716 324 290 100 40 chr1 71990308 71990508 -170673845 + L1MC4a LINE L1 5269 5480 -2328 621 268 112 29 chr1 71990527 71990644 -170673709 + L1MC4a LINE L1 5539 5645 -525 1818 166 7 10 chr1 71990644 71990951 -170673402 + AluJb SINE Alu 1 306 -6 621 268 112 29 chr1 71990951 71991148 -170673205 + L1MC4a LINE L1 5645 5682 -488 1841 141 56 0 chr1 71991148 71991432 -170672921 + AluSx SINE Alu 1 300 -12 621 268 112 29 chr1 71991432 71991498 -170672855 + L1MC4a LINE L1 5682 5741 -429 738 218 43 73 chr1 71991722 71991759 -170672594 + L1ME2 LINE L1 5794 5831 -333 2209 101 10 10 chr1 71991759 71992065 -170672288 + AluSx SINE Alu 1 306 -6 738 218 43 73 chr1 71992065 71992261 -170672092 + L1ME2 LINE L1 5831 6020 -144 233 225 125 0 chr1 71993273 71993353 -170671000 + MIR SINE MIR 168 257 -5 2131 133 3 3 chr1 71993844 71994153 -170670200 - AluSc SINE Alu 0 309 1 1930 133 0 4 chr1 71994827 71995097 -170669256 - AluSx SINE Alu -43 269 1 878 130 29 0 chr1 71995119 71995257 -170669096 - L1MB4 LINE L1 -1 6179 6038 491 257 95 14 chr1 71995309 71995457 -170668896 - MIR3 SINE MIR -16 192 33 1965 201 53 73 chr1 71995642 71996173 -170668180 + MLT2B1 LTR ERVL 1 520 0 272 293 53 0 chr1 71996502 71996577 -170667776 - L2 LINE L2 -33 3239 3161 2213 114 170 32 chr1 71996995 71997371 -170666982 + MSTA LTR MaLR 1 428 0 262 233 68 92 chr1 71997420 71997583 -170666770 + L1ME4a LINE L1 5751 5909 -212 278 25 0 25 chr1 71998032 71998072 -170666281 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 218 344 83 10 chr1 71998417 71998513 -170665840 + L2 LINE L2 3164 3266 -6 2596 43 0 0 chr1 71998865 71999165 -170665188 - AluY SINE Alu -11 300 1 299 371 22 0 chr1 71999853 71999942 -170664411 - L2 LINE L2 -15 3298 3208 1972 203 112 16 chr1 72000124 72000572 -170663781 + MER74A LTR ERVL 68 558 0 1707 257 182 27 chr1 72000736 72001738 -170662615 - L2 LINE L2 -2 3311 2153 723 251 114 48 chr1 72001738 72002053 -170662300 + L2 LINE L2 2945 3280 -33 2206 96 0 0 chr1 72002091 72002373 -170661980 - AluSx SINE Alu -14 298 17 910 256 31 20 chr1 72002459 72002713 -170661640 - MIR SINE MIR -1 261 5 22 56 0 0 chr1 72003083 72003119 -170661234 + AT_rich Low_complexity Low_complexity 1 36 0 226 196 0 0 chr1 72003773 72003819 -170660534 - AluJb SINE Alu 0 299 254 672 86 0 0 chr1 72003823 72003904 -170660449 + AluSg/x SINE Alu 213 293 -16 1392 178 16 8 chr1 72003915 72004162 -170660191 - AluJb SINE Alu -63 249 1 1940 121 0 54 chr1 72004204 72004538 -170659815 - AluSx SINE Alu 0 320 3 270 346 50 39 chr1 72004754 72004933 -170659420 + MER5A DNA MER1_type 6 186 -3 410 249 207 10 chr1 72005216 72005409 -170658944 + MIR SINE MIR 21 251 -11 957 183 0 119 chr1 72005480 72005731 -170658622 + AluJo SINE Alu 82 302 -10 1318 234 39 79 chr1 72005751 72005971 -170658382 - MLT1C LTR MaLR -23 444 250 2487 123 19 27 chr1 72005971 72006338 -170658015 - THE1B LTR MaLR 0 364 1 1318 234 39 79 chr1 72006338 72006574 -170657779 - MLT1C LTR MaLR -217 250 6 1591 249 77 55 chr1 72006588 72006945 -170657408 + MLT1J LTR MaLR 1 373 -138 1497 196 35 3 chr1 72006945 72007230 -170657123 + AluJb SINE Alu 3 296 -16 1591 249 77 55 chr1 72007230 72007365 -170656988 + MLT1J LTR MaLR 373 504 -7 1344 273 61 16 chr1 72007976 72008353 -170656000 - MLT1I LTR MaLR -9 400 7 708 296 52 50 chr1 72009702 72010164 -170654189 + L2 LINE L2 1623 2085 -1229 771 273 100 54 chr1 72010737 72011126 -170653227 + MLT1I LTR MaLR 1 407 -2 586 313 117 40 chr1 72011863 72012361 -170651992 + L2 LINE L2 2170 2705 -609 451 261 26 59 chr1 72012366 72012466 -170651887 - L2 LINE L2 -3 3310 3215 189 0 0 0 chr1 72012466 72012487 -170651866 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 451 261 26 59 chr1 72012487 72012539 -170651814 - L2 LINE L2 -98 3215 3163 189 0 0 0 chr1 72013032 72013053 -170651300 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1689 170 35 7 chr1 72013059 72013342 -170651011 - AluJo SINE Alu -21 291 1 873 309 70 18 chr1 72013548 72013936 -170650417 - MLT1I LTR MaLR 0 409 2 270 265 61 10 chr1 72014093 72014191 -170650162 + L2 LINE L2 2932 3034 -238 280 293 81 45 chr1 72014222 72014468 -170649885 + L1MC4 LINE L1 6765 7019 -1023 513 139 28 0 chr1 72014486 72014558 -170649795 - FLAM SINE Alu -10 133 60 2463 57 27 0 chr1 72014584 72014883 -170649470 + AluY SINE Alu 2 308 -3 2189 123 0 7 chr1 72015125 72015425 -170648928 + AluSx SINE Alu 1 298 -14 2126 167 8 42 chr1 72016688 72017066 -170647287 + MLT1A1 LTR MaLR 1 365 0 1159 314 63 22 chr1 72017109 72017555 -170646798 - LTR16B LTR ERVL 0 464 1 1667 344 73 27 chr1 72017583 72018342 -170646011 - ERVL LTR ERVL -17 5366 4618 2204 134 49 81 chr1 72018342 72018788 -170645565 - MSTB1 LTR MaLR 0 432 1 1667 344 73 27 chr1 72018788 72019505 -170644848 - ERVL LTR ERVL -765 4618 3935 2320 293 53 48 chr1 72019534 72020319 -170644034 - ERVL LTR ERVL -1901 3095 2304 1752 178 4 127 chr1 72020319 72020361 -170643992 - MLT2D LTR ERVL 0 414 368 462 18 0 0 chr1 72020361 72020416 -170643937 + (TG)n Simple_repeat Simple_repeat 1 55 0 1752 178 4 127 chr1 72020416 72020845 -170643508 - MLT2D LTR ERVL -46 368 1 2320 293 53 48 chr1 72020845 72020986 -170643367 - ERVL LTR ERVL -2692 2304 2165 1503 278 57 37 chr1 72020990 72021959 -170642394 - ERVL LTR ERVL -2976 2020 967 1266 280 21 33 chr1 72022264 72022689 -170641664 - LTR16B LTR ERVL 0 464 45 21 0 0 0 chr1 72023367 72023388 -170640965 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 72023656 72023677 -170640676 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 72023999 72024024 -170640329 + AT_rich Low_complexity Low_complexity 1 25 0 515 309 90 0 chr1 72024093 72024271 -170640082 + MIR SINE MIR 20 213 -49 1183 161 0 0 chr1 72024486 72024666 -170639687 + Tigger3(Golem) DNA MER2_type 2 181 -2848 * 5251 114 45 31 chr1 72024664 72025541 -170638812 + Tigger3(Golem) DNA MER2_type 2141 3029 0 249 269 74 0 chr1 72025553 72025661 -170638692 + L2 LINE L2 1937 2052 -1262 257 207 112 35 chr1 72026036 72026152 -170638201 + L2 LINE L2 2092 2216 -1098 1191 133 0 0 chr1 72026190 72026356 -170637997 - AluJ SINE Alu -5 307 142 840 174 0 0 chr1 72026552 72026684 -170637669 - AluJ SINE Alu -179 133 2 32 26 0 0 chr1 72026689 72026728 -170637625 + AT_rich Low_complexity Low_complexity 1 39 0 1486 172 88 0 chr1 72026800 72027061 -170637292 + AluJb SINE Alu 1 284 -28 351 0 0 0 chr1 72027061 72027100 -170637253 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 205 253 11 92 chr1 72027102 72027189 -170637164 - MIR SINE MIR -70 192 113 23 54 0 0 chr1 72027596 72027633 -170636720 + AT_rich Low_complexity Low_complexity 1 37 0 316 312 105 83 chr1 72027742 72028104 -170636249 - L2 LINE L2 0 3272 2903 191 35 0 35 chr1 72028425 72028454 -170635899 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2294 73 0 0 chr1 72028461 72028733 -170635620 - AluSc SINE Alu -37 272 1 184 45 0 0 chr1 72029200 72029222 -170635131 - MIR SINE MIR -38 224 203 250 269 168 34 chr1 72030627 72030776 -170633577 + MIR SINE MIR 20 188 -74 451 202 0 53 chr1 72030789 72030883 -170633470 + FLAM_A SINE Alu 40 128 -14 211 236 36 18 chr1 72031191 72031246 -170633107 - MIR SINE MIR -205 57 2 366 301 64 6 chr1 72031318 72031474 -170632879 + MIR SINE MIR 16 180 -82 242 224 40 26 chr1 72031678 72031754 -170632599 + L2 LINE L2 2685 2761 -553 220 310 138 0 chr1 72031894 72032010 -170632343 + L2 LINE L2 2890 3021 -251 251 231 19 0 chr1 72032183 72032235 -170632118 + L2 LINE L2 3259 3311 -2 4969 40 37 0 chr1 72032430 72033004 -170631349 + L1PA4 LINE L1 5542 6136 -19 201 39 0 0 chr1 72033007 72033033 -170631320 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 656 252 84 64 chr1 72033438 72033688 -170630665 - MER112 DNA MER1_type 0 256 2 512 304 0 60 chr1 72033842 72033994 -170630359 + MARNA DNA Mariner 277 418 -168 2371 74 0 7 chr1 72033994 72034291 -170630062 + AluSc SINE Alu 1 295 -14 512 304 0 60 chr1 72034291 72034322 -170630031 + MARNA DNA Mariner 418 449 -137 24 0 0 0 chr1 72034357 72034381 -170629972 + AT_rich Low_complexity Low_complexity 1 24 0 466 279 150 34 chr1 72034742 72035104 -170629249 + L1ME4a LINE L1 5507 5920 -201 1654 190 90 17 chr1 72035126 72035548 -170628805 - L1MB5 LINE L1 -21 6153 5701 318 244 31 71 chr1 72035683 72035810 -170628543 + MIR SINE MIR 124 245 -17 225 0 0 0 chr1 72035871 72035896 -170628457 + (T)n Simple_repeat Simple_repeat 1 25 0 39 74 0 0 chr1 72036678 72036759 -170627594 + GC_rich Low_complexity Low_complexity 1 81 0 23 68 0 0 chr1 72037003 72037047 -170627306 + GC_rich Low_complexity Low_complexity 1 44 0 240 234 47 0 chr1 72037457 72037521 -170626832 - MIR SINE MIR -72 136 70 356 244 81 38 chr1 72037998 72038158 -170626195 - L1ME4a LINE L1 0 6121 5955 22 35 0 0 chr1 72038717 72038746 -170625607 + AT_rich Low_complexity Low_complexity 1 29 0 2228 112 0 10 chr1 72039349 72039661 -170624692 - AluSx SINE Alu -3 309 1 267 349 40 62 chr1 72040058 72040330 -170624023 + L2 LINE L2 2503 2768 -546 22 0 0 0 chr1 72040426 72040448 -170623905 + AT_rich Low_complexity Low_complexity 1 22 0 1661 173 19 23 chr1 72040678 72040985 -170623368 - AluJb SINE Alu -6 306 1 2431 78 0 0 chr1 72041050 72041357 -170622996 - AluSx SINE Alu -5 307 1 30 27 0 0 chr1 72041488 72041525 -170622828 + AT_rich Low_complexity Low_complexity 1 37 0 1263 148 13 42 chr1 72042138 72042375 -170621978 - AluJo SINE Alu 0 312 83 590 130 23 99 chr1 72043423 72043554 -170620799 - FAM SINE Alu -9 40 1 48 43 0 0 chr1 72043575 72043644 -170620709 + AT_rich Low_complexity Low_complexity 1 69 0 34 24 0 0 chr1 72043691 72043732 -170620621 + AT_rich Low_complexity Low_complexity 1 41 0 773 253 116 29 chr1 72043930 72044370 -170619983 + LTR33 LTR ERVL 1 515 -6 301 292 15 23 chr1 72044800 72044930 -170619423 + MLT1K LTR MaLR 449 577 -11 1423 201 4 8 chr1 72044938 72045197 -170619156 - AluJb SINE Alu -54 258 1 21 0 0 0 chr1 72045197 72045218 -170619135 + AT_rich Low_complexity Low_complexity 1 21 0 266 303 66 25 chr1 72045241 72045363 -170618990 - L3 LINE CR1 -155 1422 1296 2334 63 33 20 chr1 72045363 72045664 -170618689 - AluSg SINE Alu -5 305 1 407 318 0 53 chr1 72045687 72045838 -170618515 - L3 LINE CR1 -379 1198 1056 620 318 48 24 chr1 72045890 72046142 -170618211 - MIR SINE MIR 0 262 5 222 302 63 0 chr1 72046178 72046241 -170618112 + L2 LINE L2 3169 3235 -37 243 0 0 0 chr1 72047567 72047594 -170616759 + (T)n Simple_repeat Simple_repeat 1 27 0 265 157 0 0 chr1 72047661 72047712 -170616641 - L1MC4 LINE L1 -7 8035 7985 819 197 115 34 chr1 72047934 72048352 -170616001 - L1MC4 LINE L1 -502 7540 6935 2938 173 53 8 chr1 72048353 72048971 -170615382 - L1MD3 LINE L1 -3 7992 7347 1427 240 139 14 chr1 72048968 72049101 -170615252 - L1MC4 LINE L1 -1091 6951 6836 * 1449 197 66 40 chr1 72049101 72049481 -170614872 + MLT1B LTR MaLR 1 390 0 1427 240 139 14 chr1 72049481 72049785 -170614568 - L1MC4 LINE L1 -1206 6836 6459 2249 189 55 34 chr1 72050145 72050707 -170613646 + MLT1E2 LTR MaLR 53 626 0 40 21 0 0 chr1 72050731 72050778 -170613575 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr1 72051025 72051051 -170613302 + AT_rich Low_complexity Low_complexity 1 26 0 2319 78 3 3 chr1 72051051 72051359 -170612994 - AluY SINE Alu -3 308 1 2302 85 0 0 chr1 72051361 72051656 -170612697 - AluY SINE Alu -16 295 1 240 335 121 28 chr1 72051773 72051955 -170612398 - L2 LINE L2 -2 3311 3113 234 239 34 34 chr1 72052020 72052108 -170612245 - MLT1J LTR MaLR -350 161 74 199 331 84 56 chr1 72052257 72052435 -170611918 - L2 LINE L2 -254 3018 2836 548 235 125 55 chr1 72052777 72052977 -170611376 + MIR SINE MIR 48 261 -1 236 339 0 25 chr1 72053197 72053315 -170611038 - L2 LINE L2 -994 2320 2206 969 246 89 6 chr1 72053316 72053665 -170610688 + L1ME LINE L1 3896 4273 -1873 1407 135 0 22 chr1 72053668 72053890 -170610463 + AluJo SINE Alu 1 217 -95 2821 232 86 33 chr1 72053897 72054868 -170609485 + L1ME LINE L1 4274 5193 -973 2184 78 42 0 chr1 72054868 72055151 -170609202 + AluY SINE Alu 1 295 -16 2821 232 86 33 chr1 72055151 72055460 -170608893 + L1ME LINE L1 5193 5484 -682 2231 104 0 3 chr1 72055460 72055757 -170608596 + AluSp SINE Alu 1 296 -17 342 0 0 0 chr1 72055758 72055796 -170608557 + (CA)n Simple_repeat Simple_repeat 2 39 0 2821 232 86 33 chr1 72055796 72055967 -170608386 + L1ME LINE L1 5483 5818 -348 256 305 53 14 chr1 72056236 72056518 -170607835 + L1ME3 LINE L1 4978 5270 -876 1843 144 36 21 chr1 72056518 72056852 -170607501 - MLT2C1 LTR ERVL -58 339 1 865 275 68 36 chr1 72056866 72057397 -170606956 + L1ME3 LINE L1 5401 5948 -214 295 235 160 8 chr1 72059175 72059294 -170605059 + MIR SINE MIR 2 138 -124 27 29 0 0 chr1 72059916 72059950 -170604403 + AT_rich Low_complexity Low_complexity 1 34 0 210 71 0 0 chr1 72060396 72060424 -170603929 + (TGG)n Simple_repeat Simple_repeat 1 28 0 948 276 42 37 chr1 72061299 72061679 -170602674 + MLT1I LTR MaLR 3 384 -25 509 343 82 20 chr1 72061733 72062074 -170602279 - L1ME3A LINE L1 -229 5941 5580 3942 259 52 19 chr1 72062076 72063627 -170600726 + L1MEc LINE L1 488 2090 -4306 25 0 0 0 chr1 72064014 72064039 -170600314 + AT_rich Low_complexity Low_complexity 1 25 0 203 295 66 0 chr1 72064244 72064305 -170600048 - L2 LINE L2 0 3272 3208 213 361 62 54 chr1 72064598 72064858 -170599495 - L2 LINE L2 -409 2905 2644 8987 66 7 2 chr1 72065028 72066992 -170597361 - L1PA6 LINE L1 -4 6150 4174 389 358 8 8 chr1 72067190 72067310 -170597043 + L2 LINE L2 3116 3235 -37 304 231 119 25 chr1 72067482 72067573 -170596780 - L2 LINE L2 -1210 2104 2023 2175 126 3 7 chr1 72067573 72067883 -170596470 + AluSx SINE Alu 1 309 -3 304 231 119 25 chr1 72067883 72067951 -170596402 - L2 LINE L2 -1291 2023 1930 409 219 101 30 chr1 72069243 72069412 -170594941 - MER112 DNA MER1_type -48 212 32 319 303 51 67 chr1 72070206 72070401 -170593952 - L2 LINE L2 0 3313 3122 27 62 0 0 chr1 72070512 72070560 -170593793 + AT_rich Low_complexity Low_complexity 1 48 0 208 328 0 33 chr1 72070600 72070722 -170593631 + CT-rich Low_complexity Low_complexity 3 120 0 188 143 52 0 chr1 72070776 72070844 -170593509 + (TA)n Simple_repeat Simple_repeat 2 76 -6 1751 148 60 19 chr1 72070844 72071210 -170593143 - L1MA8 LINE L1 -6 6285 5905 188 143 52 0 chr1 72071210 72071218 -170593135 + (TA)n Simple_repeat Simple_repeat 76 82 0 1358 172 54 35 chr1 72071226 72071487 -170592866 - AluJo SINE Alu -20 292 27 548 322 126 5 chr1 72071620 72071819 -170592534 - L3 LINE CR1 -16 1561 1339 2342 111 0 9 chr1 72073725 72074040 -170590313 - AluSx SINE Alu 0 312 1 459 180 0 0 chr1 72074385 72074474 -170589879 - MER53 DNA DNA -100 89 1 6516 41 7 18 chr1 72074627 72075570 -170588783 - L1PA6 LINE L1 -59 6095 5163 1088 34 7 0 chr1 72075561 72075709 -170588644 + L1PA6 LINE L1 5036 5184 -962 * 189 380 154 30 chr1 72075739 72075938 -170588415 + L2 LINE L2 1784 1957 -1357 1680 181 29 4 chr1 72075938 72076242 -170588111 + AluJo SINE Alu 1 311 0 189 380 154 30 chr1 72076242 72076903 -170587450 + L2 LINE L2 1957 2752 -562 252 217 181 7 chr1 72076999 72077137 -170587216 - L1M4 LINE L1 -2112 4034 3873 2405 93 3 0 chr1 72077204 72077505 -170586848 - AluSx SINE Alu -10 302 1 335 327 56 44 chr1 72077738 72078242 -170586111 - HAL1 LINE L1 -770 1737 1228 2154 124 0 7 chr1 72078345 72078644 -170585709 + AluSx SINE Alu 1 297 -15 521 210 50 25 chr1 72078735 72078854 -170585499 + MIR SINE MIR 118 239 -23 2558 77 0 0 chr1 72080027 72080338 -170584015 + AluY SINE Alu 1 311 0 2342 90 3 0 chr1 72080348 72080647 -170583706 + AluY SINE Alu 1 300 -11 728 192 0 0 chr1 72080725 72080845 -170583508 - AluJb SINE Alu -192 120 1 31 26 0 0 chr1 72081445 72081483 -170582870 + AT_rich Low_complexity Low_complexity 1 38 0 2766 184 28 4 chr1 72081985 72082491 -170581862 + Tigger7 DNA MER2_type 1 518 -215 553 181 0 0 chr1 72082491 72082585 -170581768 + Tigger7 DNA MER2_type 2394 2487 0 1411 266 79 72 chr1 72082668 72083378 -170580975 - MER21B LTR ERV1 -125 738 24 746 320 69 9 chr1 72083437 72083756 -170580597 - L3 LINE CR1 -22 1555 1218 236 229 62 10 chr1 72083883 72083979 -170580374 - Charlie7 DNA MER1_type -2451 161 61 414 323 87 39 chr1 72084046 72084275 -170580078 - L3 LINE CR1 -397 1180 941 204 299 62 68 chr1 72084700 72084758 -170579595 + L2 LINE L2 3032 3089 -224 2274 113 0 0 chr1 72084758 72085058 -170579295 + AluSx SINE Alu 1 300 -12 204 299 62 68 chr1 72085058 72085176 -170579177 + L2 LINE L2 3089 3207 -106 8147 223 61 17 chr1 72085399 72085966 -170578387 - L1ME1 LINE L1 -5 6161 5621 2384 55 42 0 chr1 72085966 72086255 -170578098 + AluY SINE Alu 1 301 -10 8147 223 61 17 chr1 72086255 72089145 -170575208 - L1ME1 LINE L1 -545 5621 2550 829 229 40 0 chr1 72089352 72089575 -170574778 - L1ME1 LINE L1 -3595 2551 2320 5629 9 0 0 chr1 72089762 72090392 -170573961 - L1PA2 LINE L1 -2 6153 5524 5759 130 16 57 chr1 72090633 72091274 -170573079 - L1MA5 LINE L1 -4 6296 5630 1988 134 16 3 chr1 72091274 72091579 -170572774 - AluSx SINE Alu -3 309 1 5759 130 16 57 chr1 72091579 72092388 -170571965 - L1MA5 LINE L1 -670 5630 4892 38 22 0 0 chr1 72092906 72092951 -170571402 + AT_rich Low_complexity Low_complexity 1 45 0 1905 162 0 14 chr1 72092951 72093241 -170571112 - AluSx SINE Alu -26 286 1 3025 111 75 40 chr1 72093376 72093430 -170570923 - MER41B LTR ERV1 -86 549 498 2302 96 3 3 chr1 72093430 72093733 -170570620 + AluSg SINE Alu 1 303 -7 3025 111 75 40 chr1 72093733 72094208 -170570145 - MER41B LTR ERV1 -137 498 1 261 319 62 56 chr1 72094359 72094519 -170569834 + L2 LINE L2 3149 3309 -4 24 77 0 0 chr1 72094759 72094811 -170569542 + AT_rich Low_complexity Low_complexity 1 52 0 23 54 0 0 chr1 72095260 72095297 -170569056 + AT_rich Low_complexity Low_complexity 1 37 0 394 352 36 36 chr1 72095575 72095768 -170568585 - L2 LINE L2 0 3272 3080 720 282 130 42 chr1 72095793 72096289 -170568064 + L2 LINE L2 2766 3313 0 21 0 0 0 chr1 72096407 72096428 -170567925 + AT_rich Low_complexity Low_complexity 1 21 0 38 68 0 0 chr1 72097299 72097372 -170566981 + AT_rich Low_complexity Low_complexity 1 73 0 1290 161 5 9 chr1 72098055 72098272 -170566081 + AluJb SINE Alu 85 300 -12 761 267 10 5 chr1 72098380 72098575 -170565778 + MER63A DNA MER1_type 1 196 -14 25 65 0 0 chr1 72098761 72098807 -170565546 + AT_rich Low_complexity Low_complexity 1 46 0 207 100 0 0 chr1 72099342 72099372 -170564981 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 2219 128 0 0 chr1 72100301 72100606 -170563747 - AluSx SINE Alu -7 305 1 722 343 98 33 chr1 72100784 72101213 -170563140 + L3 LINE CR1 1110 1566 -11 315 0 0 0 chr1 72101334 72101369 -170562984 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3598 136 67 1 chr1 72101439 72102095 -170562258 - L1MB4 LINE L1 -3 6177 5479 1539 207 10 34 chr1 72102095 72102451 -170561902 - MLT1A1 LTR MaLR -18 410 3 1045 146 10 10 chr1 72102453 72102658 -170561695 - L1MB4 LINE L1 -709 5471 5267 4531 141 8 1 chr1 72102658 72103397 -170560956 + Tigger2 DNA MER2_type 1 744 -1974 1315 133 79 4 chr1 72103457 72103697 -170560656 + Tigger2 DNA MER2_type 2451 2708 -10 2043 103 0 56 chr1 72103908 72104227 -170560126 + AluSg SINE Alu 1 301 -9 282 116 0 0 chr1 72104227 72104270 -170560083 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 230 313 15 0 chr1 72104336 72104403 -170559950 + MIR3 SINE MIR 139 206 -2 431 233 67 44 chr1 72105115 72105295 -170559058 + L1MC4a LINE L1 5685 5868 -1940 414 0 0 0 chr1 72105673 72105719 -170558634 + (CA)n Simple_repeat Simple_repeat 2 47 0 192 40 0 0 chr1 72105732 72105757 -170558596 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1098 134 6 0 chr1 72105775 72105939 -170558414 - AluJb SINE Alu -18 294 130 1860 159 0 27 chr1 72105952 72106247 -170558106 - AluSx SINE Alu -25 287 1 22 0 0 0 chr1 72106419 72106441 -170557912 + AT_rich Low_complexity Low_complexity 1 22 0 248 169 36 12 chr1 72106445 72106528 -170557825 + A-rich Low_complexity Low_complexity 5 89 0 1053 246 14 0 chr1 72106902 72107122 -170557231 + MER58A DNA MER1_type 2 224 0 428 362 122 4 chr1 72107607 72107861 -170556492 + L3 LINE CR1 415 698 -879 28 91 0 0 chr1 72107931 72108008 -170556345 + AT_rich Low_complexity Low_complexity 1 77 0 7147 52 2 0 chr1 72108530 72109756 -170554597 + L1PA5 LINE L1 4923 6151 -3 193 290 203 0 chr1 72109771 72109840 -170554513 - MIR SINE MIR -109 153 71 1925 260 84 52 chr1 72110049 72110099 -170554254 + L1ME LINE L1 167 214 -5899 2461 70 0 0 chr1 72110099 72110400 -170553953 + AluY SINE Alu 1 301 -10 1925 260 84 52 chr1 72110400 72111551 -170552802 + L1ME LINE L1 214 1281 -4832 491 188 8 34 chr1 72111616 72111733 -170552620 - MER20 DNA MER1_type -3 216 103 587 300 63 13 chr1 72111834 72112231 -170552122 + L1ME LINE L1 1869 2285 -4111 6315 80 56 3 chr1 72112259 72113323 -170551030 - L1PA14 LINE L1 -9 6152 5067 1466 197 13 0 chr1 72113411 72113716 -170550637 + L1P LINE L1 4786 5094 -1052 1199 175 111 48 chr1 72113702 72113850 -170550503 + L1M4 LINE L1 1076 1213 -5329 * 2417 58 0 3 chr1 72113850 72114145 -170550208 + AluY SINE Alu 1 294 -17 1199 175 111 48 chr1 72114145 72114373 -170549980 + L1M4 LINE L1 1213 1476 -5066 * 2640 159 44 30 chr1 72114364 72114961 -170549392 + L1MB7 LINE L1 5478 6082 -102 21 0 0 0 chr1 72115271 72115292 -170549061 + AT_rich Low_complexity Low_complexity 1 21 0 2267 125 0 0 chr1 72115647 72115951 -170548402 - AluSx SINE Alu -8 304 1 2251 119 0 3 chr1 72116492 72116803 -170547550 + AluSx SINE Alu 1 310 -2 28 0 0 0 chr1 72117026 72117054 -170547299 + AT_rich Low_complexity Low_complexity 1 28 0 2036 240 135 33 chr1 72117975 72119013 -170545340 - L2 LINE L2 0 3313 2158 565 229 45 60 chr1 72119045 72119246 -170545107 - L2 LINE L2 -1884 1430 1233 254 293 65 32 chr1 72119261 72119384 -170544969 + L3 LINE CR1 1279 1405 -172 906 233 69 16 chr1 72120520 72120837 -170543516 - L1MB2 LINE L1 -2 6169 5836 351 304 52 9 chr1 72121438 72121553 -170542800 - L1MC5 LINE L1 -88 7873 7754 1449 196 54 27 chr1 72123225 72123556 -170540797 + MER58B DNA MER1_type 2 341 0 221 248 104 126 chr1 72128255 72128477 -170535876 + L2 LINE L2 2542 2758 -556 233 194 254 0 chr1 72128762 72128829 -170535524 + L2 LINE L2 3189 3272 0 305 257 114 36 chr1 72130210 72130350 -170534003 + MIR SINE MIR 20 170 -92 2725 19 0 3 chr1 72130424 72130731 -170533622 + AluY SINE Alu 1 306 -5 196 222 44 0 chr1 72131894 72131939 -170532414 + L2 LINE L2 3209 3255 -17 1672 127 51 25 chr1 72132116 72132391 -170531962 + AluJo SINE Alu 1 282 -30 415 235 60 13 chr1 72133414 72133563 -170530790 + L1ME4a LINE L1 5557 5712 -409 283 208 120 16 chr1 72133815 72133940 -170530413 + L1ME4a LINE L1 5967 6104 -17 245 327 44 9 chr1 72135028 72135141 -170529212 + MIR SINE MIR 51 167 -95 221 304 54 54 chr1 72135240 72135332 -170529021 + L2 LINE L2 3209 3300 -13 717 255 95 13 chr1 72135374 72135605 -170528748 - MIR SINE MIR 0 262 13 492 61 15 0 chr1 72136191 72136257 -170528096 + AluSc SINE Alu 65 131 -178 324 292 75 1 chr1 72137256 72137383 -170526970 + MIR SINE MIR 24 161 -47 213 288 213 0 chr1 72137945 72138025 -170526328 + MIR SINE MIR 52 148 -60 235 374 8 24 chr1 72138573 72138696 -170525657 + MIR3 SINE MIR 36 156 -52 418 270 133 19 chr1 72139565 72139735 -170524618 + MIR SINE MIR 39 230 -32 1625 170 3 20 chr1 72140776 72141070 -170523283 - AluJo SINE Alu -16 296 8 393 224 131 0 chr1 72142833 72142940 -170521413 + L2 LINE L2 3193 3313 0 711 270 6 11 chr1 72143700 72143874 -170520479 - MIR SINE MIR -16 246 74 218 296 70 26 chr1 72144308 72144423 -170519930 + MIR SINE MIR 123 242 -20 360 211 268 53 chr1 72144941 72145131 -170519222 + MIR SINE MIR 13 243 -19 328 256 121 19 chr1 72145166 72145327 -170519026 + MIR SINE MIR 53 243 -19 281 303 82 25 chr1 72145351 72145473 -170518880 - L2 LINE L2 -5 3267 3139 480 273 17 26 chr1 72146023 72146189 -170518164 + MIR3 SINE MIR 31 197 -11 197 246 31 0 chr1 72146468 72146533 -170517820 + L2 LINE L2 2986 3052 -220 250 392 42 8 chr1 72146650 72146770 -170517583 + L2 LINE L2 3148 3271 -1 571 130 102 0 chr1 72147322 72147430 -170516923 + L1MD3 LINE L1 7871 7989 -6 224 288 30 0 chr1 72147548 72147614 -170516739 + MIR SINE MIR 119 186 -76 402 269 39 0 chr1 72147939 72148043 -170516310 + MIR SINE MIR 119 226 -36 183 333 0 30 chr1 72149713 72149779 -170514574 + L2 LINE L2 3188 3251 -62 205 326 90 0 chr1 72149826 72149915 -170514438 + L2 LINE L2 3172 3268 -4 181 345 35 43 chr1 72150021 72150137 -170514216 + L2 LINE L2 2932 3046 -226 1103 267 55 62 chr1 72150177 72150596 -170513757 - L2 LINE L2 0 3313 2898 678 311 49 55 chr1 72150717 72151045 -170513308 + L3 LINE CR1 1144 1469 -108 770 181 0 36 chr1 72151210 72151348 -170513005 - FLAM_A SINE Alu 0 133 1 2100 90 4 0 chr1 72151997 72152327 -170512026 - AluSx SINE Alu 0 334 4 315 0 0 0 chr1 72152404 72152439 -170511914 + (TG)n Simple_repeat Simple_repeat 2 36 0 447 19 0 0 chr1 72152507 72152559 -170511794 + (TG)n Simple_repeat Simple_repeat 2 53 0 259 241 12 60 chr1 72153732 72153815 -170510538 + MIR SINE MIR 2 80 -182 397 147 15 0 chr1 72153825 72153893 -170510460 - MER116 DNA Mariner -11 69 1 611 211 136 27 chr1 72153894 72154041 -170510312 + MIR SINE MIR 79 241 -21 316 317 81 38 chr1 72154387 72154573 -170509780 + MIR SINE MIR 35 228 -34 259 239 22 22 chr1 72154826 72154918 -170509435 - HERVK13 LTR ERVK -7134 982 891 251 267 12 12 chr1 72154892 72154978 -170509375 - HERVK13 LTR ERVK -7134 982 897 * 758 294 126 20 chr1 72155135 72155587 -170508766 - L1ME4a LINE L1 -70 6051 5552 195 349 46 0 chr1 72156732 72156841 -170507512 - MIR3 SINE MIR -2 206 93 393 293 181 15 chr1 72157084 72157289 -170507064 + MIR SINE MIR 24 262 0 1820 145 7 0 chr1 72157351 72157633 -170506720 - AluJb SINE Alu -24 288 5 567 289 138 22 chr1 72157685 72157917 -170506436 - MIR SINE MIR -1 261 3 982 244 13 18 chr1 72157981 72158210 -170506143 + MIR SINE MIR 35 262 0 2049 100 4 0 chr1 72159286 72159566 -170504787 + AluSp SINE Alu 1 281 -32 297 51 0 0 chr1 72159588 72159627 -170504726 + (GA)n Simple_repeat Simple_repeat 2 40 0 321 300 27 0 chr1 72160505 72160615 -170503738 + MER117 DNA MER1_type 47 159 -38 272 110 343 14 chr1 72161242 72161315 -170503038 - L2 LINE L2 -2 3270 3174 306 256 58 35 chr1 72161778 72161864 -170502489 - MIR SINE MIR -71 191 104 468 305 90 6 chr1 72161880 72162047 -170502306 - L2 LINE L2 0 3313 3133 243 224 14 95 chr1 72162891 72163038 -170501315 + L1ME LINE L1 5647 5781 -340 1300 295 104 26 chr1 72163038 72163689 -170500664 + L2 LINE L2 2258 2959 -355 918 206 22 0 chr1 72163713 72163893 -170500460 + MER20 DNA MER1_type 35 218 -1 695 284 34 61 chr1 72163937 72164264 -170500089 + L2 LINE L2 2996 3313 0 196 256 0 0 chr1 72165300 72165343 -170499010 - MIR SINE MIR -84 124 82 248 282 51 58 chr1 72165464 72165620 -170498733 + MER104 DNA Tc2 11 165 -15 497 220 73 9 chr1 72165666 72165775 -170498578 - MIR SINE MIR -50 212 97 928 189 34 34 chr1 72165807 72166129 -170498224 + Tigger2 DNA MER2_type 1 2685 -33 389 134 165 11 chr1 72166551 72166725 -170497628 + ORSL DNA AcHobo 1 275 0 324 293 123 19 chr1 72166996 72167102 -170497251 + L2 LINE L2 3155 3271 -1 294 289 44 59 chr1 72169152 72169287 -170495066 + MIR3 SINE MIR 76 208 0 449 33 0 17 chr1 72170142 72170202 -170494151 + (TA)n Simple_repeat Simple_repeat 2 60 0 181 235 88 29 chr1 72172210 72172278 -170492075 - MIR SINE MIR 0 262 191 1522 124 100 12 chr1 72172279 72172576 -170491777 + AluSx SINE Alu 1 320 0 1437 202 25 0 chr1 72172582 72172864 -170491489 + AluJo SINE Alu 1 289 -23 26 0 0 0 chr1 72172864 72172890 -170491463 + AT_rich Low_complexity Low_complexity 1 26 0 460 293 54 0 chr1 72172890 72173037 -170491316 - MIR SINE MIR -63 199 45 536 154 51 8 chr1 72174011 72174128 -170490225 - L1MB7 LINE L1 0 6184 6063 190 240 185 115 chr1 72174457 72174657 -170489696 - MIR SINE MIR 0 262 49 * 303 238 84 84 chr1 72174655 72174798 -170489555 - MIR3 SINE MIR -65 143 1 191 271 129 24 chr1 72175530 72175615 -170488738 + L2 LINE L2 3133 3226 -46 513 305 94 56 chr1 72176109 72176535 -170487818 + L2 LINE L2 2804 3245 -27 253 304 131 24 chr1 72176992 72177067 -170487286 + L1ME4a LINE L1 5651 5717 -404 2153 101 0 7 chr1 72177067 72177375 -170486978 + AluSc SINE Alu 1 306 -3 253 304 131 24 chr1 72177375 72177680 -170486673 + L1ME4a LINE L1 5717 6072 -49 369 0 0 0 chr1 72178347 72178388 -170485965 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 281 78 16 chr1 72228806 72228870 -170435483 - L2 LINE L2 -666 2648 2581 2331 101 3 0 chr1 72229234 72229532 -170434821 - AluSx SINE Alu -13 299 1 440 187 149 0 chr1 72229683 72229790 -170434563 + MIR SINE MIR 70 192 -70 651 227 54 144 chr1 72229794 72230147 -170434206 + HAL1 LINE L1 1 321 -2186 932 216 36 16 chr1 72230221 72230415 -170433938 + MER3 DNA MER1_type 1 198 -11 2048 225 117 132 chr1 72230431 72231224 -170433129 + HAL1 LINE L1 442 1206 -1301 2002 139 3 13 chr1 72231224 72231525 -170432828 + AluSx SINE Alu 1 298 -14 2048 225 117 132 chr1 72231525 72232191 -170432162 + HAL1 LINE L1 1206 1880 -627 22 56 0 0 chr1 72233783 72233819 -170430534 + AT_rich Low_complexity Low_complexity 1 36 0 260 319 110 0 chr1 72233835 72233982 -170430371 - MIR SINE MIR -50 212 46 1019 181 69 5 chr1 72234298 72234514 -170429839 + MER46A DNA MER2_type 2 231 -5 465 334 143 27 chr1 72235382 72235942 -170428411 + L2 LINE L2 2590 3259 -13 1480 170 133 4 chr1 72236420 72236764 -170427589 - L1MB4 LINE L1 -28 6152 5768 345 269 29 14 chr1 72236914 72237030 -170427323 - MIR SINE MIR -72 136 12 232 315 8 62 chr1 72237211 72237315 -170427038 - L2 LINE L2 -10 3303 3195 297 0 0 0 chr1 72237315 72237348 -170427005 + (GA)n Simple_repeat Simple_repeat 1 33 0 252 0 0 0 chr1 72237347 72237375 -170426978 + (TG)n Simple_repeat Simple_repeat 2 29 0 * 232 315 8 62 chr1 72237348 72237400 -170426953 - L2 LINE L2 -118 3195 3181 630 242 91 61 chr1 72237550 72237781 -170426572 + MLT1J LTR MaLR 33 270 -241 452 136 0 0 chr1 72237806 72237865 -170426488 - AluSp/q SINE Alu -30 283 225 309 323 94 26 chr1 72237993 72238185 -170426168 - L2 LINE L2 -43 3229 3025 1834 144 0 61 chr1 72238237 72238380 -170425973 + AluJo SINE Alu 1 116 -196 2423 92 0 0 chr1 72238380 72238685 -170425668 + AluSx SINE Alu 1 305 -7 1834 144 0 61 chr1 72238685 72238854 -170425499 + AluJo SINE Alu 116 294 -18 1126 103 4 172 chr1 72238984 72239246 -170425107 - MER20 DNA MER1_type 0 219 2 246 317 74 53 chr1 72239273 72239516 -170424837 - L2 LINE L2 -665 2649 2402 1672 149 36 33 chr1 72239584 72239886 -170424467 + AluJo SINE Alu 1 303 -9 2223 114 0 7 chr1 72239887 72240195 -170424158 + AluSq SINE Alu 1 306 -7 2000 106 13 58 chr1 72240196 72240507 -170423846 + AluSx SINE Alu 1 297 -15 1098 147 114 0 chr1 72241097 72241281 -170423072 - AluJb SINE Alu -21 291 87 2102 128 0 7 chr1 72241293 72241591 -170422762 - AluSx SINE Alu -16 296 1 381 125 0 0 chr1 72241720 72241776 -170422577 + Alu SINE Alu 242 297 -5 2050 149 0 0 chr1 72242239 72242535 -170421818 + AluJb SINE Alu 1 296 -16 22 35 0 0 chr1 72242537 72242566 -170421787 + AT_rich Low_complexity Low_complexity 1 29 0 1782 158 7 4 chr1 72242571 72242850 -170421503 + AluJo SINE Alu 1 280 -32 969 66 22 44 chr1 72242852 72243035 -170421318 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 297 97 65 0 chr1 72243038 72243100 -170421253 + GA-rich Low_complexity Low_complexity 5 70 0 204 125 0 0 chr1 72243354 72243386 -170420967 + (A)n Simple_repeat Simple_repeat 1 32 0 352 295 67 62 chr1 72244043 72244236 -170420117 + MIR SINE MIR 13 206 -56 835 263 28 20 chr1 72244307 72244562 -170419791 - LTR16B LTR ERVL -4 460 204 1204 143 6 0 chr1 72244586 72244817 -170419536 - AluSp SINE Alu 0 313 125 931 200 24 0 chr1 72244819 72244989 -170419364 - FAM SINE Alu -8 41 1 579 273 85 0 chr1 72244992 72245157 -170419196 - LTR16B LTR ERVL -285 179 1 1150 322 66 37 chr1 72245334 72246058 -170418295 - HERV16 LTR ERVL -461 5303 4559 1797 310 17 10 chr1 72246096 72246674 -170417679 - HERV16 LTR ERVL -3437 1559 978 1830 151 3 11 chr1 72246871 72247184 -170417169 - AluJo SINE Alu 0 311 1 1102 106 118 0 chr1 72247187 72247357 -170416996 - AluY SINE Alu -16 295 106 1610 188 19 29 chr1 72247552 72247866 -170416487 + AluJo SINE Alu 1 311 -1 242 208 21 0 chr1 72247984 72248032 -170416321 - L2 LINE L2 -8 3264 3216 252 200 0 83 chr1 72248470 72248530 -170415823 - L2 LINE L2 -4 3309 3255 3529 34 2 7 chr1 72249011 72249423 -170414930 - L1PA4 LINE L1 -1 6154 5745 21 0 0 0 chr1 72250008 72250029 -170414324 + AT_rich Low_complexity Low_complexity 1 21 0 193 368 47 19 chr1 72250185 72250291 -170414062 - MIR SINE MIR -151 111 3 239 269 0 0 chr1 72250427 72250479 -170413874 + MIR SINE MIR 87 138 -70 414 85 0 0 chr1 72250522 72250581 -170413772 + (CA)n Simple_repeat Simple_repeat 2 60 0 322 322 61 15 chr1 72251072 72251209 -170413144 + MIR SINE MIR 23 164 -61 205 224 69 17 chr1 72251847 72251905 -170412448 - MIR SINE MIR -139 123 63 486 191 21 9 chr1 72252562 72252692 -170411661 + L1PB4 LINE L1 5876 5976 -180 1243 209 124 10 chr1 72252819 72253125 -170411228 + MER58B DNA MER1_type 1 341 0 730 251 128 46 chr1 72253294 72253621 -170410732 + L2 LINE L2 2921 3274 -39 256 303 161 7 chr1 72254170 72254325 -170410028 + L2 LINE L2 2705 2883 -431 1225 37 0 0 chr1 72254444 72254578 -170409775 + AluY SINE Alu 1 134 -177 2350 64 0 0 chr1 72254578 72254873 -170409480 + AluY SINE Alu 1 295 -16 1701 185 3 7 chr1 72256860 72257157 -170407196 + AluJo SINE Alu 1 296 -16 371 232 162 0 chr1 72257218 72257317 -170407036 - MIR SINE MIR -71 191 77 316 329 54 32 chr1 72258451 72258731 -170405622 + L2 LINE L2 2804 3089 -183 305 214 154 51 chr1 72259049 72259166 -170405187 + L2 LINE L2 3184 3312 -1 2179 113 0 13 chr1 72259701 72260010 -170404343 + AluSx SINE Alu 1 305 -7 1125 130 43 58 chr1 72260719 72260926 -170403427 - MER20 DNA MER1_type 0 219 16 344 244 123 121 chr1 72263012 72263472 -170400881 + L1M2 LINE L1 683 1060 -5789 204 40 0 0 chr1 72263472 72263497 -170400856 + (CCCCG)n Simple_repeat Simple_repeat 2 26 0 344 244 123 121 chr1 72263497 72263672 -170400681 + L1M2 LINE L1 1060 1233 -5616 363 344 99 12 chr1 72264151 72264404 -170399949 + L2 LINE L2 2482 2756 -558 240 250 75 12 chr1 72264853 72264933 -170399420 + MIR SINE MIR 116 200 -62 336 334 119 45 chr1 72265216 72265238 -170399115 + L1ME4a LINE L1 5370 5389 -732 2552 69 0 0 chr1 72265238 72265541 -170398812 + AluY SINE Alu 1 303 -8 336 334 119 45 chr1 72265541 72266024 -170398329 + L1ME4a LINE L1 5389 5912 -209 816 244 190 17 chr1 72266556 72266908 -170397445 + L1MC4a LINE L1 5541 5953 -1855 2116 110 3 29 chr1 72267025 72267334 -170397019 - AluSx SINE Alu -11 301 1 313 327 53 13 chr1 72267563 72267713 -170396640 - MIR SINE MIR -23 239 84 3069 152 16 4 chr1 72268018 72268533 -170395820 + L1MB2 LINE L1 5651 6171 0 304 364 88 34 chr1 72270256 72270495 -170393858 - L2 LINE L2 -379 2935 2684 318 296 217 34 chr1 72271040 72271395 -170392958 + L1ME4a LINE L1 5584 6003 -118 2255 78 3 3 chr1 72271426 72271719 -170392634 + AluSc SINE Alu 1 293 -16 260 276 32 65 chr1 72272183 72272306 -170392047 + MIR3 SINE MIR 88 206 -2 2457 62 3 3 chr1 72272948 72273254 -170391099 - AluY SINE Alu -4 307 2 227 303 61 50 chr1 72273590 72273689 -170390664 + MIR SINE MIR 36 135 -127 791 203 40 40 chr1 72274145 72274347 -170390006 - MIR SINE MIR -59 203 2 453 278 85 24 chr1 72274515 72274727 -170389626 - MIR SINE MIR -10 252 28 1704 81 5 0 chr1 72275031 72275242 -170389111 - AluSx SINE Alu -100 212 1 509 300 29 6 chr1 72275447 72275617 -170388736 + MIR SINE MIR 1 174 -88 391 277 11 0 chr1 72275952 72276046 -170388307 - L2 LINE L2 -4 3309 3215 215 305 38 29 chr1 72276086 72276191 -170388162 - MIR3 SINE MIR 0 208 103 351 213 56 19 chr1 72276326 72276434 -170387919 + MER103 DNA DNA 4 115 -51 191 339 31 0 chr1 72276486 72276551 -170387802 + L3 LINE CR1 1511 1577 0 180 111 0 0 chr1 72276649 72276676 -170387677 + (CA)n Simple_repeat Simple_repeat 1 27 0 1039 267 85 35 chr1 72277792 72277955 -170386398 + L2 LINE L2 2093 2246 -1068 1898 148 4 0 chr1 72277955 72278232 -170386121 + AluSq SINE Alu 28 305 -8 1039 267 85 35 chr1 72278232 72278551 -170385802 + L2 LINE L2 2246 2599 -715 230 224 149 15 chr1 72278655 72278722 -170385631 - MIR SINE MIR -88 120 45 1622 63 29 0 chr1 72279412 72279618 -170384735 + L1PA13 LINE L1 5952 6163 0 22 56 0 0 chr1 72280403 72280439 -170383914 + AT_rich Low_complexity Low_complexity 1 36 0 234 128 0 0 chr1 72280892 72280931 -170383422 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1799 152 7 10 chr1 72281454 72281744 -170382609 + AluJb SINE Alu 1 289 -23 2178 115 0 32 chr1 72282467 72282779 -170381574 + AluSx SINE Alu 1 302 -10 787 171 23 0 chr1 72283194 72283323 -170381030 + MER94 DNA DNA 2 133 -1 278 315 42 42 chr1 72283356 72283546 -170380807 - MIR SINE MIR -58 204 12 480 273 56 21 chr1 72283995 72284138 -170380215 + MER5B DNA MER1_type 2 149 -29 451 260 178 0 chr1 72284464 72284633 -170379720 - MIR SINE MIR 0 262 64 1216 148 5 29 chr1 72284946 72285156 -170379197 - AluJb SINE Alu -23 289 85 246 268 188 18 chr1 72285156 72285268 -170379085 + MER94 DNA DNA 4 134 0 310 284 0 0 chr1 72285339 72285413 -170378940 - L2 LINE L2 -5 3267 3194 434 65 16 0 chr1 72285535 72285597 -170378756 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 256 255 164 57 chr1 72285715 72285978 -170378375 - L1M4 LINE L1 -979 5167 4877 249 338 39 13 chr1 72287683 72287837 -170376516 + MIR3 SINE MIR 35 192 -16 1776 159 23 16 chr1 72288264 72288573 -170375780 - AluSx SINE Alu -1 311 1 189 337 133 0 chr1 72288719 72288817 -170375536 + MIR SINE MIR 25 135 -73 2134 130 7 0 chr1 72288835 72289135 -170375218 + AluSx SINE Alu 1 302 -10 232 294 263 10 chr1 72289792 72289986 -170374367 - MIR SINE MIR -17 245 3 788 150 0 0 chr1 72290367 72290480 -170373873 + FRAM SINE Alu 56 168 -8 23 54 0 0 chr1 72290508 72290545 -170373808 + AT_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr1 72291203 72291259 -170373094 + AT_rich Low_complexity Low_complexity 1 56 0 2118 66 0 4 chr1 72291308 72291567 -170372786 + AluY SINE Alu 37 294 -17 435 106 15 0 chr1 72292522 72292588 -170371765 - MER116 DNA Mariner -12 68 2 230 260 41 3 chr1 72292771 72292850 -170371503 - MIR SINE MIR -115 93 15 2358 70 7 10 chr1 72293851 72294151 -170370202 + AluSp SINE Alu 1 299 -14 234 308 129 71 chr1 72294552 72294792 -170369561 - L2 LINE L2 -18 3254 3001 572 236 100 0 chr1 72296223 72296363 -170367990 + MIR SINE MIR 79 232 -30 23 0 0 0 chr1 72296383 72296406 -170367947 + AT_rich Low_complexity Low_complexity 1 23 0 521 178 15 0 chr1 72296733 72296843 -170367510 + L1MD3 LINE L1 7887 8042 0 230 229 42 0 chr1 72296870 72296918 -170367435 + L2 LINE L2 3216 3265 -7 427 283 93 49 chr1 72296937 72297010 -170367343 + MIR SINE MIR 49 117 -145 2195 104 3 7 chr1 72297010 72297319 -170367034 - AluSg SINE Alu -2 308 1 427 283 93 49 chr1 72297319 72297450 -170366903 + MIR SINE MIR 117 262 0 259 211 49 114 chr1 72297528 72297651 -170366702 - L1ME LINE L1 -373 5748 5634 340 299 120 27 chr1 72298542 72298726 -170365627 + L1ME3A LINE L1 5965 6165 -5 283 135 0 54 chr1 72299355 72299429 -170364924 + Charlie5 DNA MER1_type 2422 2491 -121 5738 42 3 0 chr1 72299447 72300096 -170364257 - L1PA5 LINE L1 -1 6153 5503 239 194 60 60 chr1 72300364 72300431 -170363922 + L2 LINE L2 3204 3270 -2 1653 185 7 14 chr1 72300689 72300976 -170363377 + AluJb SINE Alu 1 285 -27 198 0 0 0 chr1 72301010 72301032 -170363321 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 351 324 61 0 chr1 72301073 72301221 -170363132 + MIR3 SINE MIR 20 176 -32 505 289 35 45 chr1 72301875 72302076 -170362277 - MIR SINE MIR -44 218 20 340 227 83 45 chr1 72303217 72303343 -170361010 + MIR SINE MIR 18 138 -70 2080 230 67 39 chr1 72304239 72304940 -170359413 - MER20B DNA MER1_type 0 783 63 1938 109 83 42 chr1 72305274 72305544 -170358809 + L1MC1 LINE L1 5999 6285 -48 1881 113 41 38 chr1 72305544 72305837 -170358516 + AluSq SINE Alu 1 294 -19 1938 109 83 42 chr1 72305837 72305879 -170358474 + L1MC1 LINE L1 6285 6324 -9 300 242 207 35 chr1 72306103 72306301 -170358052 - MIR SINE MIR -7 255 24 204 156 0 0 chr1 72307090 72307129 -170357224 - MIR SINE MIR -111 151 114 959 277 23 4 chr1 72307149 72307405 -170356948 + MIR SINE MIR 2 262 0 315 269 141 106 chr1 72307463 72307861 -170356492 + L2 LINE L2 2899 3310 -3 310 301 35 28 chr1 72307863 72307997 -170356356 - MIR SINE MIR -72 136 3 637 340 26 5 chr1 72308264 72308455 -170355898 + MER91A DNA MER1_type 1 195 -1 297 325 13 51 chr1 72308987 72309144 -170355209 + MIR3 SINE MIR 12 162 -46 213 65 0 0 chr1 72309208 72309239 -170355114 + (A)n Simple_repeat Simple_repeat 1 31 0 6623 68 25 2 chr1 72310164 72311513 -170352840 + L1PA7 LINE L1 4694 6077 -77 2150 118 3 3 chr1 72314602 72314899 -170349454 - AluSq SINE Alu -16 297 1 1538 132 93 12 chr1 72315103 72315360 -170348993 + AluJo SINE Alu 1 278 -34 314 177 16 0 chr1 72315390 72315452 -170348901 + MIR SINE MIR 200 262 0 412 291 160 10 chr1 72316483 72316524 -170347829 - MIR SINE MIR -13 249 216 820 291 9 14 chr1 72316524 72316734 -170347619 - MER63A DNA MER1_type -1 209 1 412 291 160 10 chr1 72316734 72316898 -170347455 - MIR SINE MIR -46 216 13 453 242 39 20 chr1 72316929 72317082 -170347271 + L1M4 LINE L1 7 162 -6380 1681 178 0 20 chr1 72317100 72317392 -170346961 + AluJo SINE Alu 9 294 -18 346 205 7 42 chr1 72317395 72317513 -170346840 + L1MC4 LINE L1 2209 7201 -1339 2240 96 0 0 chr1 72317534 72317857 -170346496 + AluSg SINE Alu 1 323 0 1722 221 82 128 chr1 72318029 72318511 -170345842 + L1M4 LINE L1 350 853 -5689 1915 133 21 4 chr1 72318511 72318814 -170345539 + AluSx SINE Alu 1 308 0 1722 221 82 128 chr1 72318814 72319125 -170345228 + L1M4 LINE L1 853 1085 -5457 2202 107 10 3 chr1 72319125 72319433 -170344920 + AluSx SINE Alu 1 310 -2 1722 221 82 128 chr1 72319433 72319705 -170344648 + L1M4 LINE L1 1085 1368 -5174 1618 163 35 24 chr1 72319706 72319995 -170344358 - MLT1B LTR MaLR 0 390 99 2141 209 78 38 chr1 72320049 72320585 -170343768 + L1 LINE L1 4088 4654 -1492 2021 136 3 0 chr1 72320585 72320886 -170343467 + AluSx SINE Alu 1 302 -10 2141 209 78 38 chr1 72320886 72320976 -170343377 + L1 LINE L1 4654 4739 -1407 2352 74 0 29 chr1 72321094 72321405 -170342948 + AluY SINE Alu 1 302 -9 420 287 162 0 chr1 72321731 72321947 -170342406 + MIR SINE MIR 4 254 -8 23 0 0 0 chr1 72322099 72322122 -170342231 + AT_rich Low_complexity Low_complexity 1 23 0 2230 113 3 3 chr1 72322122 72322433 -170341920 - AluSx SINE Alu 0 312 2 1918 168 0 0 chr1 72322439 72322725 -170341628 - AluJb SINE Alu -23 289 4 719 196 13 8 chr1 72322862 72323196 -170341157 - MSTD LTR MaLR 0 396 1 196 400 0 11 chr1 72323240 72323330 -170341023 + MIR SINE MIR 20 108 -100 1775 166 0 19 chr1 72324222 72324530 -170339823 - AluJb SINE Alu -10 302 1 315 254 169 7 chr1 72325123 72325265 -170339088 + Charlie8 DNA MER1_type 2 166 -2251 699 316 45 58 chr1 72325322 72325838 -170338515 + L1MEd LINE L1 329 837 -5282 446 292 76 16 chr1 72325849 72326034 -170338319 - L2 LINE L2 -13 3300 3105 417 226 128 30 chr1 72326062 72326226 -170338127 - L2 LINE L2 -3110 204 25 831 236 50 38 chr1 72326419 72326793 -170337560 + L1MEd LINE L1 872 1209 -4910 2420 102 60 26 chr1 72327068 72327420 -170336933 + THE1B LTR MaLR 1 364 0 1999 147 10 0 chr1 72327943 72328242 -170336111 + AluJo SINE Alu 1 302 -10 180 296 0 0 chr1 72328386 72328430 -170335923 + L2 LINE L2 3265 3308 -5 682 112 0 0 chr1 72328481 72328570 -170335783 - AluSc SINE Alu -14 295 207 1843 153 10 3 chr1 72328683 72328983 -170335370 + AluJo SINE Alu 1 302 -10 180 296 0 0 chr1 72329127 72329171 -170335182 + L2 LINE L2 3265 3308 -5 1851 104 8 0 chr1 72329222 72329471 -170334882 - AluSc SINE Alu -14 295 45 427 252 86 54 chr1 72329507 72329585 -170334768 + L1ME4a LINE L1 5612 5686 -435 967 164 25 13 chr1 72329585 72329744 -170334609 + FRAM SINE Alu 1 161 -5 427 252 86 54 chr1 72329744 72329887 -170334466 + L1ME4a LINE L1 5686 5840 -281 262 95 48 0 chr1 72329956 72329998 -170334355 + L1ME4a LINE L1 5984 6027 -94 420 116 0 0 chr1 72330108 72330177 -170334176 - Alu SINE Alu -9 303 235 356 281 12 6 chr1 72330765 72330925 -170333428 + (TG)n Simple_repeat Simple_repeat 1 161 0 238 219 27 0 chr1 72330940 72331013 -170333340 + (TG)n Simple_repeat Simple_repeat 1 75 0 303 256 111 0 chr1 72331342 72331432 -170332921 + L1MC4 LINE L1 6604 6703 -1339 340 274 104 35 chr1 72331588 72331817 -170332536 + MIR SINE MIR 8 247 -15 180 0 0 0 chr1 72332241 72332261 -170332092 + (T)n Simple_repeat Simple_repeat 1 20 0 428 270 79 24 chr1 72332807 72332933 -170331420 - MIR3 SINE MIR -51 157 25 2232 112 3 0 chr1 72333162 72333466 -170330887 - AluSx SINE Alu -7 305 1 205 138 0 0 chr1 72333497 72333526 -170330827 + (GGA)n Simple_repeat Simple_repeat 2 30 0 1652 102 0 0 chr1 72334368 72334584 -170329769 + AluSq SINE Alu 82 297 -16 1887 151 31 6 chr1 72334595 72334914 -170329439 + L1MA5 LINE L1 5972 6298 -2 578 239 28 7 chr1 72334953 72335095 -170329258 + L1M4 LINE L1 4562 4706 -1440 24 67 0 0 chr1 72335139 72335184 -170329169 + AT_rich Low_complexity Low_complexity 1 45 0 1561 198 52 0 chr1 72335580 72335868 -170328485 - AluJo SINE Alu -9 303 1 2170 82 0 21 chr1 72336658 72336971 -170327382 - AluSp SINE Alu 0 313 18 2132 137 3 0 chr1 72336971 72337270 -170327083 - AluSx SINE Alu -12 300 1 271 395 15 25 chr1 72337461 72337661 -170326692 - L2 LINE L2 -353 2961 2764 760 198 8 0 chr1 72337666 72337792 -170326561 - FLAM_C SINE Alu -2 131 5 321 185 0 0 chr1 72337839 72337904 -170326449 + CT-rich Low_complexity Low_complexity 1 65 0 1759 169 13 7 chr1 72337904 72338211 -170326142 - AluJo SINE Alu -3 309 1 370 280 44 19 chr1 72338235 72338410 -170325943 + L1MB1 LINE L1 5643 5826 -342 * 425 274 90 48 chr1 72338281 72338591 -170325762 + L1MC4a LINE L1 5694 6017 -104 949 210 23 6 chr1 72338866 72339095 -170325258 - MIR SINE MIR -21 241 6 2347 158 99 116 chr1 72339321 72339898 -170324455 + MLT1F1 LTR MaLR 1 567 0 1214 173 48 75 chr1 72339924 72340219 -170324134 + AluJo SINE Alu 1 287 -25 1671 161 95 0 chr1 72340420 72340694 -170323659 + AluJb SINE Alu 1 300 -12 1101 146 0 52 chr1 72341866 72342038 -170322315 + FRAM SINE Alu 1 180 -132 2418 79 0 10 chr1 72342038 72342342 -170322011 + AluY SINE Alu 1 301 -10 2292 104 7 3 chr1 72342342 72342650 -170321703 + AluSx SINE Alu 1 309 -3 1101 146 0 52 chr1 72342650 72342668 -170321685 + FRAM SINE Alu 159 176 0 941 287 46 63 chr1 72342816 72343558 -170320795 + L1MEd LINE L1 527 1255 -4864 261 232 18 27 chr1 72343599 72343711 -170320642 + GA-rich Low_complexity Low_complexity 5 115 0 526 317 3 76 chr1 72343820 72343912 -170320441 + L1MEd LINE L1 1428 1525 -4785 2520 47 0 3 chr1 72343912 72344212 -170320141 - AluY SINE Alu -12 299 1 526 317 3 76 chr1 72344212 72344447 -170319906 + L1MEd LINE L1 1525 1731 -4579 217 307 0 0 chr1 72344696 72344771 -170319582 + A-rich Low_complexity Low_complexity 1 75 0 288 182 61 0 chr1 72344819 72344885 -170319468 + L1MEd LINE L1 2119 2188 -3941 2950 194 16 32 chr1 72344987 72345567 -170318786 + L1MB4 LINE L1 5561 6149 -31 1767 146 69 0 chr1 72345567 72345842 -170318511 + AluJb SINE Alu 1 294 -18 2318 101 3 0 chr1 72345844 72346150 -170318203 + AluSx SINE Alu 1 307 -5 2950 194 16 32 chr1 72346150 72346190 -170318163 + L1MB4 LINE L1 6150 6174 -6 1995 253 69 78 chr1 72346233 72346411 -170317942 + L1MEd LINE L1 2399 2577 -3552 2207 117 3 10 chr1 72346411 72346718 -170317635 + AluSx SINE Alu 1 305 -7 1995 253 69 78 chr1 72346718 72347047 -170317306 + L1MEd LINE L1 2577 2907 -3222 2121 103 24 3 chr1 72347047 72347338 -170317015 - AluSq SINE Alu -16 297 1 1995 253 69 78 chr1 72347338 72347690 -170316663 + L1MEd LINE L1 2907 3261 -2868 225 0 0 0 chr1 72347690 72347715 -170316638 + (GA)n Simple_repeat Simple_repeat 2 26 0 270 0 0 0 chr1 72347715 72347745 -170316608 + (CA)n Simple_repeat Simple_repeat 2 31 0 1995 253 69 78 chr1 72347745 72347956 -170316397 + L1MEd LINE L1 3260 3471 -2658 2489 58 0 6 chr1 72347956 72348269 -170316084 + AluY SINE Alu 1 311 0 1995 253 69 78 chr1 72348269 72348841 -170315512 + L1MEd LINE L1 3471 4030 -2099 382 277 14 81 chr1 72348835 72348863 -170315490 - L1ME LINE L1 -534 5636 5608 * 2196 136 3 0 chr1 72348863 72349172 -170315181 + AluSx SINE Alu 1 310 -2 2346 102 3 0 chr1 72349172 72349477 -170314876 + AluSq SINE Alu 1 306 -7 382 277 14 81 chr1 72349477 72349595 -170314758 - L1ME LINE L1 -560 5610 5499 335 274 21 0 chr1 72349610 72349705 -170314648 + L1ME3A LINE L1 5647 5743 -427 347 295 45 0 chr1 72349711 72349823 -170314530 + L1ME3A LINE L1 6027 6143 -27 1370 302 63 19 chr1 72349948 72350421 -170313932 - LTR33 LTR ERVL -2 519 26 369 223 46 46 chr1 72350542 72350672 -170313681 - HERVL LTR ERVL -312 5342 5213 271 304 27 20 chr1 72351020 72351140 -170313213 - MIR SINE MIR -67 141 33 23 0 0 0 chr1 72351527 72351550 -170312803 + AT_rich Low_complexity Low_complexity 1 23 0 392 113 0 16 chr1 72352219 72352281 -170312072 - U6 snRNA snRNA -23 84 24 3335 184 52 64 chr1 72352301 72352333 -170312020 - L1ME2 LINE L1 -35 6129 6098 1436 196 34 21 chr1 72352333 72352624 -170311729 - AluJo SINE Alu -17 295 1 3335 184 52 64 chr1 72352624 72352755 -170311598 - L1ME2 LINE L1 -66 6098 5967 2026 98 0 0 chr1 72352755 72353011 -170311342 - AluY SINE Alu -55 256 1 3335 184 52 64 chr1 72353011 72353715 -170310638 - L1ME2 LINE L1 -197 5967 5271 673 281 72 89 chr1 72353746 72353923 -170310430 - MLT1K LTR MaLR 0 588 410 2242 116 0 0 chr1 72353923 72354216 -170310137 + AluSq SINE Alu 1 293 -20 673 281 72 89 chr1 72354216 72354635 -170309718 - MLT1K LTR MaLR -178 410 2 282 261 93 93 chr1 72354775 72354894 -170309459 + MIR SINE MIR 8 129 -133 2036 163 0 3 chr1 72354894 72355207 -170309146 - AluJb SINE Alu 0 312 1 282 261 93 93 chr1 72355207 72355313 -170309040 + MIR SINE MIR 128 233 -29 1821 125 61 7 chr1 72355911 72356191 -170308162 + AluSx SINE Alu 1 295 -17 1875 113 46 66 chr1 72356434 72356736 -170307617 - AluSx SINE Alu -16 296 1 1035 284 55 38 chr1 72356870 72357292 -170307061 - LTR16B LTR ERVL -2 462 34 914 287 75 11 chr1 72357478 72357840 -170306513 + L2 LINE L2 2924 3308 -5 381 131 0 0 chr1 72357840 72357901 -170306452 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 351 333 109 6 chr1 72358079 72358262 -170306091 - MIR SINE MIR -13 249 48 2060 158 0 10 chr1 72358475 72358786 -170305567 - AluJo SINE Alu -4 308 1 3632 99 33 6 chr1 72358813 72359356 -170304997 + L1PA13 LINE L1 5606 6163 0 1953 170 38 27 chr1 72359360 72359730 -170304623 + MLT1A2 LTR MaLR 1 374 0 2743 201 90 58 chr1 72359775 72359923 -170304430 + L1MC4 LINE L1 7095 7237 -805 2415 81 3 0 chr1 72359923 72360218 -170304135 - AluSx SINE Alu -16 296 1 2743 201 90 58 chr1 72360218 72360259 -170304094 + L1MC4 LINE L1 7237 7275 -767 1723 186 3 6 chr1 72360259 72360570 -170303783 + AluJb SINE Alu 1 310 -2 2743 201 90 58 chr1 72360570 72361244 -170303109 + L1MC4 LINE L1 7275 7987 -55 2417 109 0 0 chr1 72361339 72361651 -170302702 - AluSx SINE Alu 0 312 1 186 71 0 0 chr1 72361890 72361918 -170302435 + (CAA)n Simple_repeat Simple_repeat 2 29 0 515 269 188 44 chr1 72362244 72362564 -170301789 + MLT1J LTR MaLR 1 366 -145 446 175 12 0 chr1 72362609 72362689 -170301664 - FRAM SINE Alu -83 93 13 37 23 0 0 chr1 72362693 72362737 -170301616 + AT_rich Low_complexity Low_complexity 1 44 0 815 187 8 0 chr1 72362737 72362871 -170301482 - AluJo SINE Alu -177 135 1 783 145 0 23 chr1 72363002 72363133 -170301220 + FLAM_C SINE Alu 13 140 -3 337 353 58 14 chr1 72363176 72363383 -170300970 + MIR SINE MIR 21 236 -26 2288 98 0 3 chr1 72364157 72364485 -170299868 + AluSq SINE Alu 1 327 0 266 347 58 8 chr1 72364816 72364937 -170299416 + MIR SINE MIR 20 146 -62 2292 92 14 3 chr1 72365171 72365466 -170298887 + AluSg SINE Alu 1 298 -12 574 153 10 0 chr1 72365474 72365572 -170298781 + L1MB4 LINE L1 6036 6134 -46 1348 197 0 17 chr1 72365579 72365818 -170298535 + AluJo SINE Alu 45 279 -33 366 294 145 1 chr1 72366050 72366204 -170298149 + L1MD2 LINE L1 5637 5815 -306 1850 171 3 22 chr1 72366289 72366605 -170297748 + AluJo SINE Alu 1 310 -2 766 120 30 30 chr1 72366691 72366824 -170297529 - FLAM_A SINE Alu 0 133 1 865 171 0 0 chr1 72367011 72367151 -170297202 + AluJo SINE Alu 47 186 -126 398 218 115 19 chr1 72367305 72367461 -170296892 + AluJb SINE Alu 130 300 -2 791 137 27 137 chr1 72367672 72367763 -170296590 + MER45A DNA AcHobo 16 79 -1502 2540 87 0 0 chr1 72367763 72368075 -170296278 - AluSp SINE Alu -1 312 1 791 137 27 137 chr1 72368075 72368166 -170296187 + MER45A DNA AcHobo 79 178 0 2209 118 3 0 chr1 72368217 72368514 -170295839 - AluSx SINE Alu -14 298 1 303 49 0 0 chr1 72368515 72368556 -170295797 + (TG)n Simple_repeat Simple_repeat 2 42 0 844 137 0 0 chr1 72368556 72368673 -170295680 - FLAM_C SINE Alu -26 117 1 187 316 174 0 chr1 72368784 72368882 -170295471 - L3 LINE CR1 -425 1152 1038 537 319 87 0 chr1 72368934 72369175 -170295178 - MIR SINE MIR 0 262 1 1642 182 114 70 chr1 72369415 72369515 -170294838 - MLT1D LTR MaLR 0 505 411 2150 132 0 0 chr1 72369515 72369811 -170294542 + AluSq SINE Alu 6 301 -12 1642 182 114 70 chr1 72369811 72370194 -170294159 - MLT1D LTR MaLR -94 411 1 446 264 56 0 chr1 72370308 72370433 -170293920 - L2 LINE L2 -4 3268 3137 2275 102 0 13 chr1 72371334 72371648 -170292705 + AluSq SINE Alu 1 310 -3 1234 173 10 0 chr1 72371722 72371930 -170292423 - MER2 DNA MER2_type -135 210 1 309 26 0 0 chr1 72371985 72372023 -170292330 + (CA)n Simple_repeat Simple_repeat 2 39 0 296 238 24 0 chr1 72372823 72372907 -170291446 - MIR SINE MIR -109 153 68 694 191 0 93 chr1 72373017 72373108 -170291245 + L1MD2 LINE L1 5842 5909 -450 2021 149 3 19 chr1 72373108 72373281 -170291072 - AluSx SINE Alu -8 304 137 2327 94 3 25 chr1 72373281 72373600 -170290753 - AluSx SINE Alu 0 312 1 2021 149 3 19 chr1 72373600 72373735 -170290618 - AluSx SINE Alu -175 137 1 694 191 0 93 chr1 72373735 72373826 -170290527 + L1MD2 LINE L1 5909 6007 -352 451 237 105 0 chr1 72375122 72375274 -170289079 + MIR SINE MIR 80 247 -15 485 333 75 5 chr1 72375436 72375649 -170288704 + MIR SINE MIR 23 250 -12 281 214 24 167 chr1 72376060 72376228 -170288125 + L3 LINE CR1 1310 1453 -124 1009 96 0 0 chr1 72376296 72376421 -170287932 - AluSq/x SINE Alu -180 133 9 1413 197 51 0 chr1 72376492 72376766 -170287587 + AluJo SINE Alu 2 289 -23 185 225 113 12 chr1 72376865 72376945 -170287408 + MIR SINE MIR 89 176 -86 2515 57 0 3 chr1 72377016 72377312 -170287041 + AluY SINE Alu 1 295 -16 1885 161 3 3 chr1 72378719 72379024 -170285329 + AluJo SINE Alu 1 305 -7 192 340 181 7 chr1 72379756 72380038 -170284315 - L2 LINE L2 -34 3279 2949 261 281 14 79 chr1 72380160 72380299 -170284054 - L2 LINE L2 -554 2760 2631 217 274 217 40 chr1 72380399 72380574 -170283779 + MIR SINE MIR 48 253 -9 280 319 0 0 chr1 72381088 72381160 -170283193 - MER117 DNA MER1_type -73 124 53 341 264 0 0 chr1 72381748 72381820 -170282533 - MER117 DNA MER1_type -73 124 53 1367 146 115 31 chr1 72382215 72382475 -170281878 - AluJo SINE Alu -30 282 1 2277 93 3 13 chr1 72382635 72382770 -170281583 + AluSx SINE Alu 1 136 -176 2315 40 0 143 chr1 72382770 72383121 -170281232 + AluY SINE Alu 1 301 -10 2277 93 3 13 chr1 72383121 72383296 -170281057 + AluSx SINE Alu 136 308 -4 2208 112 7 3 chr1 72383303 72383607 -170280746 + AluSx SINE Alu 1 305 -7 1294 145 153 21 chr1 72383816 72384058 -170280295 + AluJb SINE Alu 9 282 -30 3085 141 67 4 chr1 72385592 72386144 -170278209 - L1MB3 LINE L1 0 6183 5597 1889 154 7 7 chr1 72387228 72387533 -170276820 + AluSx SINE Alu 1 305 -7 1457 180 47 0 chr1 72388006 72388261 -170276092 + AluJb SINE Alu 1 267 -45 189 391 35 9 chr1 72389450 72389565 -170274788 - L2 LINE L2 -2 3270 3153 188 267 80 13 chr1 72389577 72389652 -170274701 - MIR SINE MIR -21 241 162 1367 180 109 0 chr1 72391724 72391980 -170272373 + AluJb SINE Alu 1 284 -28 208 276 35 0 chr1 72393534 72393592 -170270761 + MIR3 SINE MIR 122 181 -27 2271 118 0 3 chr1 72394109 72394422 -170269931 + AluSx SINE Alu 1 312 0 1351 153 138 17 chr1 72394468 72394815 -170269538 - MER3 DNA MER1_type 0 2620 2232 576 139 69 0 chr1 72394818 72394919 -170269434 - MER3 DNA MER1_type -58 151 44 21 36 0 0 chr1 72397247 72397275 -170267078 + GC_rich Low_complexity Low_complexity 1 28 0 248 162 15 44 chr1 72397315 72397383 -170266970 + CT-rich Low_complexity Low_complexity 1 66 0 180 0 0 0 chr1 72397702 72397722 -170266631 + (A)n Simple_repeat Simple_repeat 1 20 0 189 175 0 0 chr1 72397790 72397830 -170266523 + (TG)n Simple_repeat Simple_repeat 1 40 0 212 333 20 0 chr1 72398706 72398805 -170265548 - MIR SINE MIR -67 141 41 496 263 100 50 chr1 72400131 72400371 -170263982 + MIR SINE MIR 10 261 -1 225 364 64 0 chr1 72400934 72401044 -170263309 - L2 LINE L2 -5 3267 3151 219 114 0 0 chr1 72401192 72401227 -170263126 + (TA)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr1 72401231 72401254 -170263099 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr1 72401367 72401388 -170262965 + AT_rich Low_complexity Low_complexity 1 21 0 2294 82 21 0 chr1 72401433 72401724 -170262629 + AluSc SINE Alu 1 297 -12 219 351 129 32 chr1 72401813 72402061 -170262292 + L2 LINE L2 2581 2852 -462 1021 157 27 5 chr1 72402072 72402257 -170262096 + MER53 DNA DNA 1 189 0 858 114 0 0 chr1 72402981 72403104 -170261249 + AluSg/x SINE Alu 188 310 0 636 213 75 6 chr1 72403125 72403299 -170261054 + MER112 DNA MER1_type 71 256 -4 183 80 0 0 chr1 72403854 72403879 -170260474 + (TA)n Simple_repeat Simple_repeat 2 26 0 2424 247 82 41 chr1 72404042 72404938 -170259415 - L2 LINE L2 -1414 1900 969 335 258 40 32 chr1 72405111 72405235 -170259118 + L2 LINE L2 3188 3312 -1 1847 165 3 13 chr1 72405522 72405837 -170258516 - AluJb SINE Alu 0 312 1 907 207 137 4 chr1 72405840 72406096 -170258257 - L1M4 LINE L1 -816 5330 5041 1410 192 39 24 chr1 72406097 72406246 -170258107 - L1M4 LINE L1 -1160 4986 4841 1866 121 18 21 chr1 72406246 72406558 -170257795 + AluSx SINE Alu 1 311 0 1410 192 39 24 chr1 72406558 72406745 -170257608 - L1M4 LINE L1 -1305 4841 4644 819 147 51 19 chr1 72407047 72407204 -170257149 - L1ME LINE L1 -611 5551 5390 969 94 0 16 chr1 72407204 72407331 -170257022 - AluSg/x SINE Alu -21 291 167 1366 158 136 38 chr1 72407631 72407896 -170256457 + AluJo SINE Alu 1 291 -21 772 164 0 0 chr1 72407908 72408030 -170256323 + FLAM_A SINE Alu 1 122 -11 1641 162 50 23 chr1 72408143 72408446 -170255907 - AluJo SINE Alu -1 311 1 678 179 100 11 chr1 72408449 72408639 -170255714 - L1M4 LINE L1 -1559 4587 4381 479 300 69 39 chr1 72409141 72409374 -170254979 - L3 LINE CR1 -820 757 518 * 512 273 20 0 chr1 72409364 72409514 -170254839 + MIR SINE MIR 106 258 -4 896 132 0 0 chr1 72409517 72409680 -170254673 + FLAM_C SINE Alu 5 167 0 460 307 52 17 chr1 72409704 72409935 -170254418 + MIR SINE MIR 21 259 -3 226 300 0 0 chr1 72410003 72410063 -170254290 - L3 LINE CR1 -1131 446 387 2142 128 3 13 chr1 72410104 72410417 -170253936 - AluSg SINE Alu 0 310 1 23 33 0 0 chr1 72410466 72410496 -170253857 + AT_rich Low_complexity Low_complexity 1 30 0 2615 40 0 0 chr1 72411112 72411413 -170252940 + AluY SINE Alu 1 301 -10 254 195 0 0 chr1 72411498 72411539 -170252814 + L2 LINE L2 3217 3257 -15 195 42 0 0 chr1 72412497 72412521 -170251832 + (CA)n Simple_repeat Simple_repeat 1 24 0 657 341 75 27 chr1 72412552 72412818 -170251535 - LTR16B LTR ERVL -32 418 99 1798 164 26 10 chr1 72413166 72413471 -170250882 + AluJo SINE Alu 1 310 -2 229 256 0 0 chr1 72413471 72413514 -170250839 + polypurine Low_complexity Low_complexity 2 44 0 1579 175 91 0 chr1 72413710 72413995 -170250358 - AluJb SINE Alu -1 311 1 1998 134 7 7 chr1 72413995 72414292 -170250061 - AluSx SINE Alu -14 298 1 214 279 0 0 chr1 72414865 72414908 -170249445 - L2 LINE L2 -94 3178 3136 778 173 0 16 chr1 72414938 72415065 -170249288 + AluSq/x SINE Alu 2 126 -186 1786 145 36 33 chr1 72415097 72415400 -170248953 + AluJb SINE Alu 5 308 -4 2307 128 0 0 chr1 72415687 72415999 -170248354 - AluSx SINE Alu 0 312 1 2156 121 39 55 chr1 72416290 72416671 -170247682 + MLT1B LTR MaLR 14 388 -2 241 369 0 27 chr1 72416765 72416874 -170247479 - L2 LINE L2 -553 2761 2656 2265 109 48 34 chr1 72416874 72417232 -170247121 + THE1B LTR MaLR 1 363 -1 241 369 0 27 chr1 72417232 72417271 -170247082 - L2 LINE L2 -658 2656 2617 800 202 6 17 chr1 72417548 72417726 -170246627 + FRAM SINE Alu 1 173 -3 187 414 9 0 chr1 72417852 72417968 -170246385 + MIR SINE MIR 30 146 -62 238 148 180 0 chr1 72418055 72418116 -170246237 - MIR SINE MIR -73 189 118 202 292 28 28 chr1 72418687 72418759 -170245594 - L2 LINE L2 0 3272 3201 2529 75 0 3 chr1 72418771 72419078 -170245275 + AluSq SINE Alu 3 308 -5 1935 156 0 0 chr1 72419095 72419383 -170244970 + AluJb SINE Alu 2 289 -23 186 43 0 0 chr1 72419394 72419417 -170244936 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 219 336 89 55 chr1 72419429 72419721 -170244632 - L2 LINE L2 -81 3191 2890 303 292 35 26 chr1 72419897 72420010 -170244343 - MIR SINE MIR -65 143 30 1805 178 0 7 chr1 72420272 72420570 -170243783 - AluJo SINE Alu -15 297 2 188 245 0 20 chr1 72420596 72420645 -170243708 + MIR SINE MIR 104 151 -111 519 82 14 0 chr1 72420881 72420954 -170243399 + MADE1 DNA Mariner 1 74 -6 687 347 13 0 chr1 72420979 72421218 -170243135 + LTR16C LTR ERVL 1 242 -249 1141 116 56 46 chr1 72421268 72421484 -170242869 - L1MB3 LINE L1 -3 6180 5963 1112 241 0 0 chr1 72422053 72422265 -170242088 + LTR16C LTR ERVL 278 489 -2 323 224 0 0 chr1 72422373 72422431 -170241922 - L2 LINE L2 -7 3306 3249 262 227 68 23 chr1 72422719 72422807 -170241546 - MIR3 SINE MIR -19 189 98 717 216 56 39 chr1 72422861 72423093 -170241260 - MER106A DNA MER1_type 0 236 1 7511 175 14 14 chr1 72423250 72424772 -170239581 - L1 LINE L1 -853 5995 4475 1195 209 0 13 chr1 72424785 72425020 -170239333 - AluJo SINE Alu -18 294 63 2902 199 53 89 chr1 72425133 72425404 -170238949 - L1 LINE L1 -2358 4490 4211 2409 82 0 31 chr1 72425404 72425723 -170238630 - AluY SINE Alu -2 309 1 2902 199 53 89 chr1 72425723 72426049 -170238304 - L1 LINE L1 -2637 4211 3875 1076 159 0 0 chr1 72426049 72426206 -170238147 - AluJb SINE Alu -13 299 143 2902 199 53 89 chr1 72426206 72426315 -170238038 - L1 LINE L1 -2973 3875 3764 2167 150 0 0 chr1 72426315 72426622 -170237731 + AluSx SINE Alu 1 307 -5 2902 199 53 89 chr1 72426622 72426885 -170237468 - L1 LINE L1 -3084 3764 3493 2216 123 7 0 chr1 72426885 72427195 -170237158 + AluSx SINE Alu 1 312 0 2902 199 53 89 chr1 72427195 72427276 -170237077 - L1 LINE L1 -3355 3493 3411 2134 132 3 0 chr1 72427276 72427563 -170236790 + AluSx SINE Alu 1 288 -24 2902 199 53 89 chr1 72427563 72427903 -170236450 - L1 LINE L1 -3437 3411 3052 1015 205 77 13 chr1 72427915 72428149 -170236204 - AluJo SINE Alu -7 305 57 822 171 37 0 chr1 72428470 72428634 -170235719 - AluSx SINE Alu -118 194 25 2907 166 2 21 chr1 72428636 72429033 -170235320 - L1 LINE L1 -3901 2947 2573 1789 170 14 0 chr1 72429033 72429337 -170235016 + AluJo SINE Alu 1 308 0 2907 166 2 21 chr1 72429337 72429519 -170234834 - L1 LINE L1 -4275 2573 2389 1266 151 73 0 chr1 72429521 72429727 -170234626 + AluJb SINE Alu 86 306 -6 7005 217 46 41 chr1 72429729 72430061 -170234292 - L1 LINE L1 -4449 2400 2071 1335 216 0 66 chr1 72430061 72430241 -170234112 - AluJb SINE Alu -1 311 161 2185 107 10 0 chr1 72430241 72430532 -170233821 - AluSp SINE Alu -19 294 1 1335 216 0 66 chr1 72430532 72430684 -170233669 - AluJb SINE Alu -151 161 1 7005 217 46 41 chr1 72430684 72430776 -170233577 - L1 LINE L1 -4778 2071 1981 2342 101 0 7 chr1 72430776 72431084 -170233269 - AluSc SINE Alu -1 308 3 7005 217 46 41 chr1 72431084 72431110 -170233243 - L1 LINE L1 -4868 1981 1957 1733 159 17 17 chr1 72431110 72431405 -170232948 - AluSx SINE Alu -3 309 15 7005 217 46 41 chr1 72431405 72431480 -170232873 - L1 LINE L1 -4892 1957 1884 2341 109 0 0 chr1 72431480 72431791 -170232562 - AluY SINE Alu 0 311 1 7005 217 46 41 chr1 72431791 72432180 -170232173 - L1 LINE L1 -4965 1884 1498 2336 112 0 7 chr1 72432180 72432485 -170231868 - AluSx SINE Alu -9 303 1 7005 217 46 41 chr1 72432485 72433348 -170231005 - L1 LINE L1 -5351 1498 610 1841 228 18 26 chr1 72433382 72433510 -170230843 - L1 LINE L1 -6368 481 354 2330 107 3 0 chr1 72433510 72433808 -170230545 - AluSq SINE Alu -14 299 1 1841 228 18 26 chr1 72433808 72434069 -170230284 - L1 LINE L1 -6495 354 95 809 203 0 0 chr1 72434075 72434208 -170230145 - FLAM_A SINE Alu 0 133 1 704 254 114 0 chr1 72434229 72434449 -170229904 - MIR SINE MIR -5 257 13 286 368 75 0 chr1 72435180 72435286 -170229067 - L2 LINE L2 -38 3234 3121 2253 120 0 3 chr1 72435295 72435594 -170228759 + AluSx SINE Alu 1 298 -14 334 185 123 0 chr1 72435825 72435906 -170228447 - MER5A DNA MER1_type -95 94 4 1446 195 16 69 chr1 72436384 72436702 -170227651 + AluJo SINE Alu 2 302 0 306 73 0 0 chr1 72437189 72437230 -170227123 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1856 146 11 7 chr1 72437457 72437781 -170226572 - AluJo SINE Alu 0 325 1 759 153 147 7 chr1 72438115 72438265 -170226088 + AluJo SINE Alu 121 291 -21 247 274 189 33 chr1 72438273 72438426 -170225927 - L2 LINE L2 -2496 818 642 445 229 122 8 chr1 72438455 72438586 -170225767 - MIR SINE MIR -26 236 91 456 233 33 8 chr1 72438846 72438966 -170225387 + L2 LINE L2 3141 3263 -9 2065 141 6 6 chr1 72438975 72439287 -170225066 - AluJb SINE Alu 0 312 1 417 224 67 126 chr1 72439681 72439800 -170224553 - MIR SINE MIR -6 256 154 2355 91 0 0 chr1 72439800 72440096 -170224257 - AluY SINE Alu -15 296 1 417 224 67 126 chr1 72440096 72440199 -170224154 - MIR SINE MIR -108 154 47 497 125 0 0 chr1 72440211 72440283 -170224070 - MSTB LTR MaLR 0 426 355 222 143 24 0 chr1 72440296 72440338 -170224015 + GA-rich Low_complexity Low_complexity 4 46 0 2139 129 56 17 chr1 72440338 72440694 -170223659 - MSTB LTR MaLR -56 370 1 5315 155 44 0 chr1 72440694 72441560 -170222793 - MSTB-int LTR MaLR 0 1651 748 974 144 6 0 chr1 72441562 72441729 -170222624 - MSTB-int LTR MaLR -1483 168 1 2245 140 127 3 chr1 72441729 72442108 -170222245 - MSTB LTR MaLR 0 426 1 197 247 63 130 chr1 72442197 72442420 -170221933 + L3 LINE CR1 862 1069 -508 364 240 125 10 chr1 72442426 72442530 -170221823 - L2 LINE L2 0 3272 3157 235 273 124 41 chr1 72442541 72442662 -170221691 + L3 LINE CR1 1071 1201 -376 345 264 44 22 chr1 72442787 72442878 -170221475 + L3 LINE CR1 1409 1501 -76 191 281 18 0 chr1 72443018 72443075 -170221278 + L3 LINE CR1 1519 1576 -1 1785 156 0 49 chr1 72443459 72443605 -170220748 + AluJb SINE Alu 1 153 -159 2380 92 0 0 chr1 72443605 72443900 -170220453 + AluSg SINE Alu 1 295 -15 1785 156 0 49 chr1 72443900 72444081 -170220272 + AluJb SINE Alu 153 312 0 242 306 0 0 chr1 72444732 72444804 -170219549 + (TA)n Simple_repeat Simple_repeat 2 73 0 1497 172 0 63 chr1 72444929 72445232 -170219121 - AluJo SINE Alu -18 294 11 293 254 71 56 chr1 72445248 72445445 -170218908 - L1ME LINE L1 -301 5820 5621 289 262 36 12 chr1 72446133 72446217 -170218136 - L2 LINE L2 -6 3266 3181 2141 136 0 0 chr1 72446240 72446534 -170217819 + AluSg SINE Alu 1 294 -16 536 139 8 108 chr1 72446813 72446942 -170217411 + AluJo SINE Alu 19 134 -178 21 0 0 0 chr1 72446942 72446963 -170217390 + AT_rich Low_complexity Low_complexity 1 21 0 184 337 20 20 chr1 72446999 72447097 -170217256 - L2 LINE L2 -460 2854 2757 1188 150 37 0 chr1 72447105 72447292 -170217061 - AluSg/x SINE Alu -21 291 98 917 135 0 0 chr1 72447353 72447486 -170216867 + FLAM_C SINE Alu 1 133 0 724 340 88 10 chr1 72447506 72447997 -170216356 - L2 LINE L2 -585 2729 2201 777 64 71 57 chr1 72447998 72448138 -170216215 + AluSg/x SINE Alu 166 307 -3 895 275 84 33 chr1 72448372 72448739 -170215614 + L2 LINE L2 2924 3309 -4 239 374 0 0 chr1 72448751 72448866 -170215487 - L2 LINE L2 -1417 1897 1783 201 250 0 0 chr1 72449153 72449189 -170215164 - L2 LINE L2 -18 3254 3219 2204 95 0 0 chr1 72449257 72449540 -170214813 + AluSx SINE Alu 1 283 -29 207 0 0 0 chr1 72449543 72449566 -170214787 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2238 113 0 28 chr1 72450029 72450347 -170214006 - AluSx SINE Alu -3 309 1 776 239 82 60 chr1 72450396 72450475 -170213878 + Charlie2 DNA MER1_type 1 77 -2785 1986 198 8 6 chr1 72450475 72450839 -170213514 + MLT1A1 LTR MaLR 1 365 0 776 239 82 60 chr1 72450839 72451077 -170213276 + Charlie2 DNA MER1_type 77 325 -2537 749 165 38 13 chr1 72451079 72451237 -170213116 + Charlie2 DNA MER1_type 1856 2017 -845 2588 39 0 7 chr1 72451259 72451569 -170212784 - AluY SINE Alu -3 308 1 2333 95 0 7 chr1 72451569 72451874 -170212479 - AluSc SINE Alu -5 304 1 201 39 0 0 chr1 72451888 72451914 -170212439 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 21848 53 5 7 chr1 72451914 72455445 -170208908 - L1PA6 LINE L1 -13 6141 2611 1190 137 6 0 chr1 72455445 72455613 -170208740 + AluSg/x SINE Alu 129 297 -13 945 176 6 6 chr1 72455756 72455915 -170208438 + 7SLRNA srpRNA srpRNA 146 304 -16 2348 76 0 32 chr1 72455954 72456270 -170208083 + AluY SINE Alu 1 306 -5 619 228 47 0 chr1 72456271 72456442 -170207911 + Charlie2 DNA MER1_type 2682 2860 -2 231 303 11 34 chr1 72456488 72456577 -170207776 + MIR SINE MIR 69 155 -107 332 245 64 0 chr1 72456698 72456792 -170207561 - L2 LINE L2 0 3313 3214 2448 77 0 0 chr1 72456818 72457116 -170207237 + AluSg1 SINE Alu 1 298 -11 471 254 171 0 chr1 72457127 72457320 -170207033 + MIR SINE MIR 34 259 -3 191 304 17 52 chr1 72457423 72457538 -170206815 - MIR SINE MIR -81 127 17 2104 133 0 22 chr1 72457565 72457881 -170206472 - AluSx SINE Alu -3 309 1 2372 65 3 3 chr1 72457958 72458250 -170206103 + AluY SINE Alu 1 292 -19 341 307 88 69 chr1 72458509 72458762 -170205591 - L2 LINE L2 -33 3239 2977 2748 79 2 51 chr1 72458762 72459117 -170205236 - THE1C LTR MaLR 0 375 39 2071 129 7 0 chr1 72459117 72459403 -170204950 + AluSq SINE Alu 1 288 -25 2748 79 2 51 chr1 72459403 72459441 -170204912 - THE1C LTR MaLR -336 39 1 341 307 88 69 chr1 72459441 72459506 -170204847 - L2 LINE L2 -295 2977 2915 424 219 9 9 chr1 72459663 72459768 -170204585 - MER5B DNA MER1_type -73 105 1 1704 176 7 7 chr1 72459813 72460102 -170204251 - AluJb SINE Alu -23 289 1 1686 163 14 7 chr1 72460233 72460510 -170203843 + AluJb SINE Alu 15 293 -19 1664 170 62 3 chr1 72460603 72460891 -170203462 - AluJo SINE Alu -6 306 2 352 225 0 108 chr1 72461150 72461270 -170203083 + MIR SINE MIR 85 191 -71 1336 282 51 67 chr1 72461302 72461542 -170202811 + Charlie2b DNA MER1_type 47 289 -2493 2411 88 3 0 chr1 72461542 72461849 -170202504 + AluSp SINE Alu 1 308 -5 1336 282 51 67 chr1 72461849 72462254 -170202099 + Charlie2b DNA MER1_type 289 682 -2100 800 98 0 0 chr1 72462315 72462417 -170201936 - AluSx SINE Alu -17 295 194 966 140 7 0 chr1 72462418 72462554 -170201799 - AluSx SINE Alu -171 141 5 1982 65 4 8 chr1 72462571 72462846 -170201507 - AluY SINE Alu 0 310 37 3960 211 66 60 chr1 72462848 72463108 -170201245 + Charlie2a DNA MER1_type 1465 1722 -1140 2507 76 0 6 chr1 72463108 72463422 -170200931 + AluSp SINE Alu 1 312 -1 3960 211 66 60 chr1 72463422 72463660 -170200693 + Charlie2a DNA MER1_type 1722 1957 -905 2122 131 3 0 chr1 72463660 72463958 -170200395 - AluSp SINE Alu -14 299 1 3960 211 66 60 chr1 72463958 72464559 -170199794 + Charlie2a DNA MER1_type 1957 2553 -309 1684 164 7 42 chr1 72464559 72464869 -170199484 - AluJo SINE Alu -13 299 1 3960 211 66 60 chr1 72464869 72464950 -170199403 + Charlie2a DNA MER1_type 2553 2632 -230 1514 191 67 3 chr1 72464950 72465233 -170199120 + AluJb SINE Alu 1 301 -11 3960 211 66 60 chr1 72465233 72465285 -170199068 + Charlie2a DNA MER1_type 2632 2682 -180 2652 30 0 0 chr1 72465285 72465580 -170198773 + AluY SINE Alu 1 295 -16 3960 211 66 60 chr1 72465580 72465733 -170198620 + Charlie2a DNA MER1_type 2682 2862 0 195 365 0 12 chr1 72465921 72466006 -170198347 + L2 LINE L2 2560 2643 -671 596 248 0 0 chr1 72466072 72466201 -170198152 - FLAM_A SINE Alu 0 133 5 195 269 54 32 chr1 72466205 72466298 -170198055 + L2 LINE L2 2686 2780 -534 2074 140 13 3 chr1 72466309 72466616 -170197737 + AluSx SINE Alu 1 310 -2 795 183 0 37 chr1 72466618 72466782 -170197571 + AluJo/FRAM SINE Alu 140 297 -5 2132 109 0 31 chr1 72466861 72466994 -170197359 - AluSg SINE Alu 0 310 174 1047 179 136 64 chr1 72466994 72467414 -170196939 + LTR7 LTR ERV1 1 450 0 2132 109 0 31 chr1 72467414 72467600 -170196753 - AluSg SINE Alu -136 174 1 563 319 122 7 chr1 72467767 72468046 -170196307 + LTR16C LTR ERVL 181 491 0 2616 103 0 48 chr1 72468067 72468463 -170195890 - MER51B LTR ERV1 0 377 1 366 255 75 0 chr1 72468512 72468606 -170195747 + L2 LINE L2 3195 3295 -18 229 243 153 85 chr1 72468611 72468788 -170195565 - MIR SINE MIR -3 259 71 2026 179 166 22 chr1 72468791 72469332 -170195021 + LTR29 LTR ERV1 2 620 -2 2142 97 0 61 chr1 72469415 72469529 -170194824 + AluSx SINE Alu 1 120 -192 8044 66 4 2 chr1 72469529 72470496 -170193857 + LTR5 LTR ERVK 1 969 0 2142 97 0 61 chr1 72470496 72470524 -170193829 + AluSx SINE Alu 120 148 -164 2103 123 0 19 chr1 72470524 72470842 -170193511 + AluSx SINE Alu 1 312 0 2142 97 0 61 chr1 72470842 72471008 -170193345 + AluSx SINE Alu 148 291 -21 780 215 119 4 chr1 72472182 72472443 -170191910 - Charlie1 DNA MER1_type -125 2636 2346 317 213 16 0 chr1 72472441 72472502 -170191851 - Charlie1 DNA MER1_type -2690 71 10 * 310 283 10 0 chr1 72472503 72472602 -170191751 - L1MC/D LINE L1 -2045 5763 5664 1833 172 0 17 chr1 72472733 72473035 -170191318 + AluJo SINE Alu 1 297 -15 253 229 10 104 chr1 72473065 72473161 -170191192 - L2 LINE L2 -188 3084 2998 2165 106 0 20 chr1 72473736 72474038 -170190315 - AluSx SINE Alu -16 296 1 206 355 45 7 chr1 72474447 72474602 -170189751 - MIR SINE MIR -4 258 98 1804 129 10 55 chr1 72474607 72474916 -170189437 + AluJb SINE Alu 1 295 -17 2419 89 0 3 chr1 72474919 72475222 -170189131 + AluSg SINE Alu 1 302 -8 254 279 15 0 chr1 72475245 72475313 -170189040 - MIR SINE MIR -147 115 47 980 221 15 15 chr1 72475420 72475624 -170188729 - MLT1A1 LTR MaLR 0 365 162 22 35 0 0 chr1 72475657 72475686 -170188667 + AT_rich Low_complexity Low_complexity 1 29 0 467 230 0 0 chr1 72475690 72475777 -170188576 - FLAM_C SINE Alu -25 118 32 1822 175 0 0 chr1 72475834 72476120 -170188233 - AluJo SINE Alu -20 292 7 531 124 144 0 chr1 72476132 72476229 -170188124 - MLT1A1 LTR MaLR -254 111 1 437 297 92 14 chr1 72477050 72477197 -170187156 - L2 LINE L2 -179 3134 3000 1729 139 24 14 chr1 72477197 72477485 -170186868 + AluJo SINE Alu 1 291 -21 437 297 92 14 chr1 72477485 72477702 -170186651 - L2 LINE L2 -313 3000 2733 295 197 0 26 chr1 72477716 72477792 -170186561 - L1MB7 LINE L1 0 6184 6111 910 106 0 0 chr1 72477792 72477915 -170186438 + AluY SINE Alu 1 123 -188 2831 165 98 5 chr1 72477917 72478487 -170185866 - L1MB7 LINE L1 -58 6126 5504 2671 113 55 14 chr1 72478500 72478856 -170185497 - MER57B LTR ERV1 0 434 57 3570 137 23 74 chr1 72478856 72479584 -170184769 - LTR8 LTR ERV1 0 691 1 2671 113 55 14 chr1 72479584 72479643 -170184710 - MER57B LTR ERV1 -377 57 2 1581 150 71 8 chr1 72479662 72480055 -170184298 - L1MB7 LINE L1 -685 5489 5073 330 221 134 31 chr1 72480061 72480188 -170184165 - L2 LINE L2 -562 2752 2613 210 242 65 0 chr1 72480492 72480554 -170183799 - L2 LINE L2 -217 3055 2990 1039 164 0 0 chr1 72480649 72480808 -170183545 + FAM SINE Alu 17 175 -10 369 0 0 0 chr1 72481542 72481583 -170182770 + (TG)n Simple_repeat Simple_repeat 2 42 0 2138 122 7 3 chr1 72481855 72482150 -170182203 + AluSx SINE Alu 9 304 -8 487 269 51 101 chr1 72482664 72483056 -170181297 - L3 LINE CR1 -15 1562 1149 2252 112 7 0 chr1 72483140 72483443 -170180910 - AluSq SINE Alu -8 305 1 712 193 0 15 chr1 72483454 72483589 -170180764 - FLAM_C SINE Alu 0 133 1 1830 167 3 6 chr1 72483890 72484201 -170180152 + AluJo SINE Alu 1 310 -2 331 294 91 0 chr1 72484420 72484563 -170179790 + MIR SINE MIR 48 203 -59 679 194 209 76 chr1 72484568 72484923 -170179430 - MER96B DNA MER1_type? -4 413 12 2166 46 50 21 chr1 72485092 72485364 -170178989 + AluY SINE Alu 1 283 -28 198 0 0 0 chr1 72485364 72485386 -170178967 + (CA)n Simple_repeat Simple_repeat 1 22 0 1704 165 10 20 chr1 72485945 72486242 -170178111 - AluJo SINE Alu -2 310 17 2076 103 13 13 chr1 72486301 72486602 -170177751 - AluSg SINE Alu -9 301 1 1807 155 25 0 chr1 72486783 72487060 -170177293 + AluSx SINE Alu 1 284 -28 369 0 0 0 chr1 72487061 72487102 -170177251 + (TA)n Simple_repeat Simple_repeat 2 42 0 2183 133 0 3 chr1 72487853 72488161 -170176192 - AluSx SINE Alu -5 307 1 1653 163 25 11 chr1 72488597 72488873 -170175480 + AluJb SINE Alu 16 295 -17 398 277 61 34 chr1 72489739 72489887 -170174466 + MIR SINE MIR 56 207 -55 23 33 0 0 chr1 72489917 72489947 -170174406 + AT_rich Low_complexity Low_complexity 1 30 0 240 305 39 47 chr1 72491693 72491821 -170172532 - MIR3 SINE MIR -53 155 29 23 33 0 0 chr1 72492319 72492349 -170172004 + AT_rich Low_complexity Low_complexity 1 30 0 248 393 14 7 chr1 72493274 72493419 -170170934 + MER91A DNA MER1_type 1 146 -50 363 346 8 0 chr1 72493831 72493958 -170170395 + MER91A DNA MER1_type 24 151 -45 721 243 25 68 chr1 72494881 72495088 -170169265 + MIR SINE MIR 9 206 -56 1958 153 17 3 chr1 72495088 72495388 -170168965 + AluJb SINE Alu 1 304 -8 721 243 25 68 chr1 72495388 72495415 -170168938 + MIR SINE MIR 206 233 -29 585 241 79 56 chr1 72495463 72495679 -170168674 - MIR SINE MIR -40 222 2 1282 144 0 0 chr1 72495697 72495884 -170168469 + AluSx SINE Alu 1 187 -125 2117 108 35 3 chr1 72496932 72497219 -170167134 - AluSx SINE Alu -16 296 1 1698 160 3 31 chr1 72497448 72497741 -170166612 - AluJo SINE Alu -16 296 12 224 174 65 0 chr1 72498583 72498629 -170165724 + L2 LINE L2 3261 3309 -4 1862 150 26 7 chr1 72498770 72499076 -170165277 - AluSx SINE Alu 0 312 1 465 50 0 0 chr1 72499182 72499242 -170165111 + (TG)n Simple_repeat Simple_repeat 2 61 0 505 241 159 0 chr1 72500732 72500877 -170163476 + MER45A DNA AcHobo 11 178 0 2073 103 45 14 chr1 72501156 72501446 -170162907 - AluSx SINE Alu -13 299 1 21 0 0 0 chr1 72501638 72501659 -170162694 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 72501659 72501682 -170162671 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1764 152 36 7 chr1 72501682 72501959 -170162394 - AluSx SINE Alu -27 285 1 355 336 14 14 chr1 72501959 72502105 -170162248 - L2 LINE L2 -7 3306 3161 2323 176 90 24 chr1 72502343 72502609 -170161744 + L1MB7 LINE L1 5640 5887 -297 2451 48 41 3 chr1 72502609 72502903 -170161450 + AluY SINE Alu 1 305 -6 2323 176 90 24 chr1 72502903 72503147 -170161206 + L1MB7 LINE L1 5887 6184 0 325 198 11 44 chr1 72503183 72503274 -170161079 + MIR SINE MIR 175 262 0 1881 124 22 0 chr1 72503644 72503917 -170160436 + AluSx SINE Alu 1 279 -33 405 0 0 0 chr1 72504124 72504169 -170160184 + (TC)n Simple_repeat Simple_repeat 2 46 0 225 0 0 0 chr1 72504168 72504193 -170160160 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 2429 84 7 0 chr1 72504198 72504506 -170159847 - AluSg SINE Alu 0 310 1 1728 195 3 7 chr1 72505075 72505378 -170158975 - AluJb SINE Alu -10 302 1 249 181 96 53 chr1 72505399 72505493 -170158860 - L1ME4a LINE L1 -2 6119 6022 1236 280 72 10 chr1 72505520 72506141 -170158212 - L2 LINE L2 -233 3080 2413 225 186 0 0 chr1 72506864 72506907 -170157446 + GA-rich Low_complexity Low_complexity 2 44 0 22 0 0 0 chr1 72507716 72507738 -170156615 + GC_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr1 72508982 72509005 -170155348 + (TC)n Simple_repeat Simple_repeat 2 24 0 2044 108 3 43 chr1 72509680 72509985 -170154368 - AluSx SINE Alu -19 293 1 184 300 57 29 chr1 72510060 72510130 -170154223 - L2 LINE L2 -7 3306 3235 538 179 179 0 chr1 72510146 72510258 -170154095 - FLAM_C SINE Alu -10 133 2 243 306 30 37 chr1 72510444 72510578 -170153775 - L3 LINE CR1 -160 1417 1285 2531 78 0 0 chr1 72511182 72511488 -170152865 - AluY SINE Alu -5 306 1 1113 92 14 0 chr1 72511498 72511640 -170152713 - AluSg/x SINE Alu -23 287 144 2185 113 23 3 chr1 72511643 72511945 -170152408 - AluSx SINE Alu -4 308 1 2241 100 30 0 chr1 72511989 72512288 -170152065 - AluSp SINE Alu -5 308 1 219 139 0 0 chr1 72512353 72512389 -170151964 + (CA)n Simple_repeat Simple_repeat 2 37 0 734 202 10 57 chr1 72512951 72513144 -170151209 - FRAM SINE Alu 0 176 1 1828 176 38 33 chr1 72514821 72515213 -170149140 - MSTD LTR MaLR -2 394 1 3328 232 139 39 chr1 72515213 72516293 -170148060 - MSTD-int LTR MaLR 0 1651 464 821 185 62 7 chr1 72516335 72516481 -170147872 + MER8 DNA MER2_type 24 177 -62 254 102 23 193 chr1 72516514 72516546 -170147807 - Tigger2 DNA MER2_type -2645 73 37 1705 154 59 0 chr1 72516546 72516818 -170147535 + AluJb SINE Alu 12 299 -13 254 102 23 193 chr1 72516818 72516873 -170147480 - Tigger2 DNA MER2_type -2681 37 1 2186 207 14 43 chr1 72516883 72517179 -170147174 - MSTD-int LTR MaLR -1232 503 227 2178 112 14 7 chr1 72517179 72517474 -170146879 - AluSx SINE Alu -15 297 1 2186 207 14 43 chr1 72517474 72517694 -170146659 - MSTD-int LTR MaLR -1508 227 2 1600 184 100 30 chr1 72517696 72518066 -170146287 - MSTD LTR MaLR 0 396 1 444 222 241 33 chr1 72518265 72518477 -170145876 + MIR SINE MIR 7 262 0 308 232 152 7 chr1 72519322 72519360 -170144993 - MER113 DNA MER1_type? -34 487 456 1542 164 0 61 chr1 72519360 72519670 -170144683 + AluJb SINE Alu 1 291 -21 308 232 152 7 chr1 72519670 72519782 -170144571 - MER113 DNA MER1_type? -65 456 315 222 116 0 0 chr1 72519821 72519864 -170144489 + (T)n Simple_repeat Simple_repeat 1 43 0 372 291 88 11 chr1 72519873 72519995 -170144358 - MER113 DNA MER1_type? -237 284 173 2055 121 21 14 chr1 72519995 72520327 -170144026 - AluSg SINE Alu 0 310 1 372 291 88 11 chr1 72520327 72520465 -170143888 - MER113 DNA MER1_type? -348 173 4 2608 56 0 7 chr1 72520790 72521094 -170143259 + AluY SINE Alu 1 302 -9 494 286 129 9 chr1 72521217 72521434 -170142919 - MIR SINE MIR -17 245 3 223 299 15 15 chr1 72521775 72521842 -170142511 - MIR3 SINE MIR -30 178 112 763 179 95 45 chr1 72521907 72522006 -170142347 + MER5A DNA MER1_type 1 94 -95 1404 166 161 30 chr1 72522006 72522404 -170141949 + LTR7 LTR ERV1 1 450 0 763 179 95 45 chr1 72522404 72522483 -170141870 + MER5A DNA MER1_type 94 188 -1 2102 121 0 0 chr1 72522604 72522921 -170141432 - AluSx SINE Alu 0 317 1 540 232 32 0 chr1 72523685 72523810 -170140543 + L2 LINE L2 3185 3313 0 183 42 0 0 chr1 72524050 72524074 -170140279 + (GAGTG)n Simple_repeat Simple_repeat 3 26 0 1816 135 4 4 chr1 72524638 72524905 -170139448 - AluSx SINE Alu -45 267 1 2389 108 8 30 chr1 72524935 72525305 -170139048 - THE1B LTR MaLR -2 362 1 1852 133 7 39 chr1 72526938 72527247 -170137106 + AluJb SINE Alu 5 303 -9 2261 88 0 36 chr1 72527407 72527715 -170136638 + AluSg SINE Alu 1 297 -13 1390 158 13 9 chr1 72527848 72528076 -170136277 - MER46A DNA MER2_type -1 235 7 279 0 0 0 chr1 72528243 72528274 -170136079 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2076 118 0 4 chr1 72528274 72528554 -170135799 - AluSq SINE Alu -34 279 1 188 244 0 0 chr1 72528821 72528862 -170135491 - L2 LINE L2 -9 3304 3264 2378 68 10 0 chr1 72528938 72529231 -170135122 - AluSc SINE Alu -13 296 1 217 322 141 28 chr1 72529894 72530071 -170134282 - L2 LINE L2 -223 3049 2853 2199 110 0 0 chr1 72530255 72530561 -170133792 + AluY SINE Alu 1 306 0 1781 183 10 13 chr1 72531006 72531307 -170133046 - AluJo SINE Alu -7 305 6 187 299 146 15 chr1 72531308 72531445 -170132908 + MIR SINE MIR 79 233 -29 22 35 0 0 chr1 72531467 72531496 -170132857 + AT_rich Low_complexity Low_complexity 1 29 0 2329 104 0 3 chr1 72531661 72531959 -170132394 + AluSq SINE Alu 1 297 -16 1375 244 165 71 chr1 72532134 72532343 -170132010 - HAL1b LINE L1 -11 1337 1149 2133 125 3 3 chr1 72532343 72532640 -170131713 - AluSx SINE Alu -15 297 1 1375 244 165 71 chr1 72532640 72533054 -170131299 - HAL1b LINE L1 -199 1149 776 517 143 22 0 chr1 72533054 72533145 -170131208 + L1MB8 LINE L1 6075 6167 -11 1375 244 165 71 chr1 72533145 72533369 -170130984 - HAL1b LINE L1 -572 776 575 1516 177 36 39 chr1 72533369 72533674 -170130679 - AluJo SINE Alu -8 304 1 1375 244 165 71 chr1 72533674 72533955 -170130398 - HAL1b LINE L1 -773 575 100 492 325 150 9 chr1 72534073 72534393 -170129960 + L2 LINE L2 2916 3280 -33 1127 189 59 75 chr1 72534606 72534733 -170129620 + AluJo SINE Alu 1 129 -173 183 42 0 0 chr1 72534733 72534757 -170129596 + (CA)n Simple_repeat Simple_repeat 1 24 0 1127 189 59 75 chr1 72534757 72534936 -170129417 + AluJo SINE Alu 129 302 0 254 300 0 0 chr1 72535320 72535380 -170128973 + polypyrimidine Low_complexity Low_complexity 4 63 0 512 200 0 0 chr1 72535383 72535478 -170128875 - FRAM SINE Alu -39 137 43 3608 159 67 8 chr1 72535700 72536360 -170127993 - L1PA16 LINE L1 0 6166 5468 21 0 0 0 chr1 72537200 72537221 -170127132 + AT_rich Low_complexity Low_complexity 1 21 0 1750 138 50 14 chr1 72537936 72538218 -170126135 - AluJb SINE Alu -2 310 19 180 343 15 0 chr1 72538644 72538711 -170125642 + L2 LINE L2 336 403 -2911 524 264 192 0 chr1 72538931 72539113 -170125240 - MIR SINE MIR -26 236 20 404 250 175 0 chr1 72539149 72539269 -170125084 + L1MC/D LINE L1 5683 5823 -1985 547 196 0 0 chr1 72539270 72539367 -170124986 + FLAM_C SINE Alu 29 125 -18 337 325 84 12 chr1 72539625 72539791 -170124562 + MIR SINE MIR 1 178 -84 832 261 128 39 chr1 72539806 72540321 -170124032 - L2 LINE L2 0 3313 2761 735 207 0 0 chr1 72540439 72540574 -170123779 - AluSg/x SINE Alu -15 297 163 1383 147 0 0 chr1 72540622 72540844 -170123509 - AluJo SINE Alu 0 306 85 202 394 16 24 chr1 72541204 72541331 -170123022 - L3 LINE CR1 -531 1046 921 251 238 15 180 chr1 72541748 72541859 -170122494 - MIR SINE MIR -12 250 122 1801 143 107 41 chr1 72541859 72542222 -170122131 + MLT1B LTR MaLR 1 387 -3 2170 111 3 7 chr1 72542231 72542550 -170121803 - AluSx SINE Alu 0 312 1 251 238 15 180 chr1 72542550 72542689 -170121664 - MIR SINE MIR -149 113 33 2252 113 0 6 chr1 72543300 72543611 -170120742 - AluSc SINE Alu 0 309 1 1985 124 39 0 chr1 72544281 72544563 -170119790 - AluSx SINE Alu -19 293 1 217 118 39 20 chr1 72544763 72544814 -170119539 + CT-rich Low_complexity Low_complexity 2 53 0 1703 170 6 49 chr1 72544816 72545140 -170119213 - AluJo SINE Alu -2 310 1 1335 138 49 20 chr1 72546010 72546256 -170118097 - L1MA9 LINE L1 0 6312 6060 328 226 87 70 chr1 72546412 72546527 -170117826 - MIR SINE MIR -60 148 32 722 126 48 0 chr1 72546674 72546777 -170117576 - L1PA16 LINE L1 -9 6157 6050 353 290 32 14 chr1 72547069 72547290 -170117063 + L1P5 LINE L1 5263 5487 -664 44 63 0 0 chr1 72547290 72547369 -170116984 + AT_rich Low_complexity Low_complexity 1 79 0 261 232 9 47 chr1 72547607 72547719 -170116634 + L1ME LINE L1 5724 5829 -297 3734 193 74 17 chr1 72547728 72548566 -170115787 - L1MC2 LINE L1 -6 6338 5453 2196 137 0 0 chr1 72548607 72548913 -170115440 - AluSx SINE Alu -6 306 1 578 153 20 20 chr1 72549586 72549684 -170114669 + AluJb SINE Alu 185 282 -30 4476 93 37 17 chr1 72550017 72550617 -170113736 - LTR9 LTR ERV1 0 612 1 2110 103 13 26 chr1 72551314 72551626 -170112727 + AluSx SINE Alu 1 308 -4 403 260 143 73 chr1 72552908 72553181 -170111172 - MER102b DNA MER1_type 0 341 50 215 222 19 0 chr1 72556085 72556139 -170108214 + CT-rich Low_complexity Low_complexity 2 56 0 212 333 13 0 chr1 72556484 72556562 -170107791 + MIR3 SINE MIR 124 202 -6 404 356 45 14 chr1 72556681 72556903 -170107450 - MIR SINE MIR -14 248 20 1511 201 4 11 chr1 72557001 72557280 -170107073 + AluJo SINE Alu 18 294 -18 539 292 65 0 chr1 72560293 72560478 -170103875 - LTR33A LTR ERVL -261 262 66 1955 121 9 44 chr1 72560588 72560903 -170103450 - AluJo SINE Alu -8 304 1 1250 275 54 0 chr1 72560917 72561248 -170103105 + MLT1I LTR MaLR 59 407 -2 198 343 76 76 chr1 72561321 72561519 -170102834 - L2 LINE L2 -61 3211 3014 613 223 80 84 chr1 72561809 72562060 -170102293 - MER102b DNA MER1_type -10 331 82 243 0 0 0 chr1 72562244 72562271 -170102082 + (TC)n Simple_repeat Simple_repeat 2 28 0 877 180 0 12 chr1 72563074 72563235 -170101118 + AluJb SINE Alu 137 295 -17 261 83 0 0 chr1 72563235 72563271 -170101082 + (CATA)n Simple_repeat Simple_repeat 3 38 0 180 176 0 0 chr1 72563734 72563768 -170100585 + A-rich Low_complexity Low_complexity 1 34 0 280 214 87 78 chr1 72564579 72564682 -170099671 + HAL1b LINE L1 435 538 -810 1562 164 55 58 chr1 72564753 72565063 -170099290 - AluJo SINE Alu 0 312 4 2239 109 3 13 chr1 72565091 72565394 -170098959 - AluSx SINE Alu -12 300 1 390 270 87 39 chr1 72565842 72566026 -170098327 - L1MC4 LINE L1 0 8042 7868 531 221 18 9 chr1 72566026 72566139 -170098214 - MER81 DNA DNA 0 114 1 390 270 87 39 chr1 72566139 72566287 -170098066 - L1MC4 LINE L1 -174 7868 7694 471 234 12 144 chr1 72566327 72566500 -170097853 - L1MC4 LINE L1 -725 7317 7187 2329 106 3 0 chr1 72566500 72566811 -170097542 - AluSq SINE Alu -1 312 1 471 234 12 144 chr1 72566811 72566894 -170097459 - L1MC4 LINE L1 -855 7187 7095 4346 102 16 8 chr1 72566976 72567592 -170096761 - L1PA16 LINE L1 -3 6163 5543 3464 203 66 32 chr1 72567595 72567774 -170096579 - L1M4 LINE L1 -933 5213 5041 2180 120 3 0 chr1 72567774 72568073 -170096280 - AluSx SINE Alu -12 300 1 3464 203 66 32 chr1 72568073 72568336 -170096017 - L1M4 LINE L1 -1105 5041 4788 2571 51 0 10 chr1 72568336 72568648 -170095705 - AluY SINE Alu -2 309 1 3464 203 66 32 chr1 72568648 72569133 -170095220 - L1M4 LINE L1 -1358 4788 4254 842 238 51 0 chr1 72569122 72569336 -170095017 - L1MC4 LINE L1 -1029 7013 6789 * 449 272 15 7 chr1 72569349 72569485 -170094868 - L1M4 LINE L1 -1979 4167 4031 358 299 116 14 chr1 72569577 72570009 -170094344 - L1M4 LINE L1 -2994 3152 2677 1456 145 0 18 chr1 72570093 72570321 -170094032 + LTR8 LTR ERV1 468 691 0 930 171 44 0 chr1 72570321 72570479 -170093874 + HUERS-P1 LTR ERV1 1 165 -6098 576 328 134 35 chr1 72570999 72571402 -170092951 + L3 LINE CR1 611 1053 -524 26 0 0 0 chr1 72571414 72571440 -170092913 + AT_rich Low_complexity Low_complexity 1 26 0 197 241 0 69 chr1 72571512 72571570 -170092783 + L3 LINE CR1 811 864 -713 212 147 0 0 chr1 72572045 72572079 -170092274 - MIR SINE MIR -140 122 89 374 147 13 67 chr1 72572117 72572192 -170092161 - MLT1A1 LTR MaLR -4 361 291 541 185 0 0 chr1 72572219 72572300 -170092053 - AluJ/FLAM SINE Alu -230 82 2 1676 189 27 0 chr1 72572301 72572598 -170091755 - MLT1A1 LTR MaLR -60 305 1 2341 94 0 19 chr1 72572735 72573043 -170091310 + AluSx SINE Alu 1 302 -10 416 200 12 12 chr1 72573169 72573254 -170091099 + MER3 DNA MER1_type 1 85 -124 379 247 11 11 chr1 72573478 72573567 -170090786 + MER3 DNA MER1_type 1 89 -120 2040 157 3 0 chr1 72573990 72574295 -170090058 + AluJb SINE Alu 2 307 -5 548 257 54 7 chr1 72574376 72574524 -170089829 - MIR SINE MIR -56 206 52 189 216 39 20 chr1 72575260 72575311 -170089042 - L3 LINE CR1 -24 1553 1502 2109 117 28 0 chr1 72575509 72575799 -170088554 - AluSx SINE Alu -14 298 1 1905 158 40 0 chr1 72575956 72576253 -170088100 - AluSx SINE Alu -3 309 1 192 40 0 0 chr1 72576306 72576331 -170088022 + (TC)n Simple_repeat Simple_repeat 2 26 0 1623 149 45 35 chr1 72576331 72576619 -170087734 - AluJb SINE Alu -13 299 9 2626 27 3 0 chr1 72576866 72577159 -170087194 - AluY SINE Alu -17 294 1 321 243 95 27 chr1 72577159 72577307 -170087046 - L1M4 LINE L1 -942 5204 5047 1259 165 60 9 chr1 72577435 72577653 -170086700 - AluJb SINE Alu -75 237 9 2316 96 0 0 chr1 72577900 72578192 -170086161 - AluSc SINE Alu -17 292 1 4600 183 75 25 chr1 72578256 72579119 -170085234 - L1MD1 LINE L1 -7 6235 5271 2054 144 3 0 chr1 72579119 72579411 -170084942 - AluSx SINE Alu -16 296 4 4600 183 75 25 chr1 72579411 72580013 -170084340 - L1MD1 LINE L1 -971 5271 4700 236 313 0 0 chr1 72580043 72580110 -170084243 - L1MC4 LINE L1 -152 7890 7824 758 153 8 38 chr1 72580128 72580259 -170084094 - AluSq/x SINE Alu -179 134 8 1288 229 32 91 chr1 72580264 72580369 -170083984 - L1MC4 LINE L1 -201 7841 7731 180 111 0 0 chr1 72580369 72580396 -170083957 + (TA)n Simple_repeat Simple_repeat 1 27 0 1288 229 32 91 chr1 72580396 72580520 -170083833 - L1MC4 LINE L1 -311 7731 7601 2287 92 27 0 chr1 72580520 72580813 -170083540 - AluSx SINE Alu -11 301 1 1288 229 32 91 chr1 72580813 72581057 -170083296 - L1MC4 LINE L1 -441 7601 7396 1637 174 16 3 chr1 72581057 72581237 -170083116 - AluJo SINE Alu 0 312 125 324 48 0 0 chr1 72581237 72581279 -170083074 + (TG)n Simple_repeat Simple_repeat 1 42 0 1637 174 16 3 chr1 72581279 72581403 -170082950 - AluJo SINE Alu -187 125 4 1288 229 32 91 chr1 72581403 72581433 -170082920 - L1MC4 LINE L1 -646 7396 7366 246 125 50 0 chr1 72581458 72581498 -170082855 + MER116 DNA Mariner 39 80 0 338 307 131 7 chr1 72581539 72581676 -170082677 + MIR SINE MIR 109 262 0 260 222 150 20 chr1 72581790 72581917 -170082436 + MIR SINE MIR 104 249 -13 300 279 134 88 chr1 72582172 72582605 -170081748 - L1M2 LINE L1 -5863 986 534 194 214 301 0 chr1 72583044 72583147 -170081206 - L2 LINE L2 0 3313 3180 269 191 167 119 chr1 72583265 72583516 -170080837 - L2 LINE L2 -339 2975 2713 190 320 31 10 chr1 72583528 72583625 -170080728 + L2 LINE L2 2948 3046 -226 2226 110 3 0 chr1 72584232 72584533 -170079820 + AluSx SINE Alu 1 302 -10 2105 89 10 17 chr1 72584739 72585032 -170079321 - L1PA10 LINE L1 0 6168 5878 301 324 9 19 chr1 72585326 72585431 -170078922 - MIR SINE MIR -99 163 60 199 321 54 18 chr1 72585694 72585806 -170078547 + MIR SINE MIR 79 194 -68 236 268 0 0 chr1 72586316 72586372 -170077981 + L2 LINE L2 3215 3270 -2 801 281 68 39 chr1 72586444 72586829 -170077524 - L1MC/D LINE L1 -2156 5652 5257 750 157 14 175 chr1 72587555 72587778 -170076575 + MER5A DNA MER1_type 3 189 0 302 339 50 16 chr1 72587790 72587911 -170076442 + MIR SINE MIR 22 146 -116 290 268 71 45 chr1 72587973 72588085 -170076268 + MIR SINE MIR 34 148 -60 626 231 151 10 chr1 72588116 72588315 -170076038 - MIR SINE MIR -28 234 8 2103 55 0 0 chr1 72589669 72589924 -170074429 + L1MA2 LINE L1 6050 6304 0 279 216 137 10 chr1 72590009 72590111 -170074242 - MIR SINE MIR -73 189 75 669 300 8 39 chr1 72590123 72590336 -170074017 - MIR SINE MIR -9 253 50 1384 178 30 36 chr1 72590336 72590639 -170073714 - AluJb SINE Alu -11 301 1 669 300 8 39 chr1 72590639 72590683 -170073670 - MIR SINE MIR -212 50 6 248 239 99 42 chr1 72590749 72590820 -170073533 + L2 LINE L2 3200 3274 -39 487 267 99 5 chr1 72591272 72591471 -170072882 - MIR SINE MIR 0 262 43 501 251 211 26 chr1 72591797 72592024 -170072329 + L2 LINE L2 3045 3313 0 407 259 54 9 chr1 72592285 72592397 -170071956 + L2 LINE L2 3155 3271 -1 2476 74 0 0 chr1 72594785 72595084 -170069269 - AluSx SINE Alu -13 299 1 410 297 43 22 chr1 72595116 72595248 -170069105 + MIR3 SINE MIR 20 154 -54 428 278 105 57 chr1 72595248 72595496 -170068857 - MER112 DNA MER1_type 0 260 1 180 77 0 0 chr1 72595565 72595591 -170068762 + (GA)n Simple_repeat Simple_repeat 2 27 0 243 61 0 0 chr1 72595773 72595806 -170068547 + (TG)n Simple_repeat Simple_repeat 1 33 0 334 281 269 0 chr1 72596343 72596503 -170067850 - MIR SINE MIR -13 249 47 2178 112 7 0 chr1 72596975 72597271 -170067082 + AluSx SINE Alu 1 298 -14 807 256 140 23 chr1 72597646 72598280 -170066073 + MER20B DNA MER1_type 1 745 -38 2129 128 0 13 chr1 72598551 72598864 -170065489 - AluSx SINE Alu -2 310 2 23 33 0 0 chr1 72598864 72598894 -170065459 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chr1 72598960 72599004 -170065349 + AT_rich Low_complexity Low_complexity 1 44 0 2027 148 27 35 chr1 72599007 72599411 -170064942 - L1MA7 LINE L1 0 6291 5891 2856 250 90 89 chr1 72599420 72599471 -170064882 - L1MEc LINE L1 -1778 4437 4388 2133 117 3 16 chr1 72599471 72599780 -170064573 + AluSx SINE Alu 1 305 -7 2856 250 90 89 chr1 72599780 72600605 -170063748 - L1MEc LINE L1 -1827 4388 3565 833 163 0 0 chr1 72600605 72600728 -170063625 - FLAM_C SINE Alu -20 123 1 2856 250 90 89 chr1 72600728 72601205 -170063148 - L1MEc LINE L1 -2650 3565 3090 2161 109 10 7 chr1 72601205 72601498 -170062855 + AluSg SINE Alu 1 294 -16 2856 250 90 89 chr1 72601498 72602190 -170062163 - L1MEc LINE L1 -3125 3090 2400 2365 102 0 16 chr1 72602190 72602505 -170061848 - AluSx SINE Alu -2 310 1 2856 250 90 89 chr1 72602505 72603782 -170060571 - L1MEc LINE L1 -3815 2400 1022 2006 119 53 0 chr1 72603785 72604070 -170060283 - AluSx SINE Alu -12 300 1 2353 138 39 82 chr1 72605415 72605974 -170058379 - LTR36 LTR ERV1 -76 535 1 459 178 101 23 chr1 72606397 72606526 -170057827 + L1ME3A LINE L1 6022 6160 -10 388 307 52 62 chr1 72606545 72606737 -170057616 - MIR3 SINE MIR -5 203 14 28 48 0 0 chr1 72607381 72607423 -170056930 + AT_rich Low_complexity Low_complexity 1 42 0 209 268 0 0 chr1 72607453 72607494 -170056859 + (CA)n Simple_repeat Simple_repeat 2 42 0 180 316 81 44 chr1 72607550 72607686 -170056667 + L2 LINE L2 2929 3069 -203 489 235 24 118 chr1 72607857 72608027 -170056326 + MIR SINE MIR 92 245 -17 320 278 117 19 chr1 72608033 72608195 -170056158 - L1ME4a LINE L1 -9 6112 5935 1853 146 31 0 chr1 72608827 72609115 -170055238 - AluSx SINE Alu -15 297 1 1631 142 114 0 chr1 72609165 72609481 -170054872 - L1MB7 LINE L1 -19 6165 5814 2367 93 0 0 chr1 72609495 72609796 -170054557 - AluY SINE Alu -10 301 1 1544 187 20 10 chr1 72609806 72610111 -170054242 - AluJb SINE Alu -3 309 2 230 241 0 0 chr1 72610464 72610518 -170053835 - MLT1K LTR MaLR -530 58 5 394 339 45 0 chr1 72610710 72610822 -170053531 + L2 LINE L2 3143 3259 -13 3206 209 48 36 chr1 72610857 72611760 -170052593 - L1MD2 LINE L1 -12 6347 5435 2430 80 3 0 chr1 72612576 72612876 -170051477 - AluSq SINE Alu -12 301 1 22 35 0 0 chr1 72612935 72612964 -170051389 + AT_rich Low_complexity Low_complexity 1 29 0 1907 157 7 0 chr1 72613556 72613855 -170050498 - AluSx SINE Alu -7 305 5 1930 168 3 3 chr1 72614137 72614435 -170049918 - AluJo SINE Alu -14 298 1 568 319 93 4 chr1 72614641 72614867 -170049486 - MIR SINE MIR -15 247 2 204 184 0 0 chr1 72614979 72615028 -170049325 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 1823 174 0 7 chr1 72615492 72615790 -170048563 - AluJb SINE Alu -14 298 3 751 239 47 5 chr1 72615834 72616047 -170048306 - HAL1 LINE L1 -1913 594 373 2238 235 62 40 chr1 72616450 72617087 -170047266 - L1ME3A LINE L1 -38 6132 5474 2113 125 3 3 chr1 72617087 72617382 -170046971 - AluSg SINE Alu -15 295 1 2238 235 62 40 chr1 72617382 72617517 -170046836 - L1ME3A LINE L1 -696 5474 5343 515 234 0 8 chr1 72617517 72617641 -170046712 + MLT1A2 LTR MaLR 252 374 0 2123 125 3 0 chr1 72617701 72617990 -170046363 - AluSq SINE Alu -15 298 9 329 206 0 0 chr1 72618013 72618081 -170046272 - MLT1A1 LTR MaLR -54 311 244 363 275 87 17 chr1 72618081 72618368 -170045985 - L1ME3A LINE L1 -819 5327 5021 181 362 0 14 chr1 72618448 72618517 -170045836 + MIR SINE MIR 49 116 -146 212 292 46 0 chr1 72618580 72618645 -170045708 + MIR SINE MIR 119 186 -76 527 274 120 52 chr1 72618689 72618922 -170045431 + L1MC4 LINE L1 7695 7958 -84 2084 147 3 0 chr1 72618922 72619221 -170045132 - AluSx SINE Alu -12 300 1 527 274 120 52 chr1 72619221 72619312 -170045041 + L1MC4 LINE L1 7958 8041 -1 301 348 109 11 chr1 72619566 72619750 -170044603 - MIR SINE MIR -13 249 48 300 309 9 9 chr1 72619775 72619885 -170044468 + CT-rich Low_complexity Low_complexity 3 112 0 2407 102 0 3 chr1 72619892 72620206 -170044147 - AluSq SINE Alu 0 313 1 192 40 0 0 chr1 72620209 72620234 -170044119 + (T)n Simple_repeat Simple_repeat 1 25 0 1862 179 0 13 chr1 72620321 72620623 -170043730 - AluJb SINE Alu -14 298 1 29 0 0 0 chr1 72620625 72620654 -170043699 + AT_rich Low_complexity Low_complexity 1 29 0 594 244 179 23 chr1 72620668 72620975 -170043378 - MLT1H LTR MaLR -28 521 167 865 204 48 116 chr1 72620986 72621382 -170042971 - MLT1B LTR MaLR -6 384 16 542 225 0 80 chr1 72621374 72621561 -170042792 - MLT1H LTR MaLR -367 182 11 * 220 121 0 0 chr1 72621838 72621871 -170042482 - MIR SINE MIR -26 236 204 228 316 82 48 chr1 72622251 72622402 -170041951 + MIR SINE MIR 46 207 -55 1315 147 77 45 chr1 72622402 72622715 -170041638 + MER33 DNA MER1_type 1 323 -1 228 316 82 48 chr1 72622715 72622769 -170041584 + MIR SINE MIR 207 258 -4 287 271 0 0 chr1 72623001 72623071 -170041282 - MLT1K LTR MaLR 0 588 519 322 323 174 6 chr1 72623469 72623630 -170040723 - MIR SINE MIR -67 195 8 413 304 69 87 chr1 72624455 72624475 -170039878 - L2 LINE L2 0 3272 3253 2413 74 3 3 chr1 72624475 72624774 -170039579 - AluSg SINE Alu -11 299 1 413 304 69 87 chr1 72624774 72625261 -170039092 - L2 LINE L2 -19 3253 2696 2685 151 58 85 chr1 72625394 72626103 -170038250 + LTR8 LTR ERV1 1 690 -1 339 230 35 26 chr1 72626926 72627039 -170037314 + L1MC5 LINE L1 7818 7931 -30 439 306 92 6 chr1 72627445 72627618 -170036735 - MIR SINE MIR -1 261 74 2253 83 40 17 chr1 72627658 72627960 -170036393 + AluSq SINE Alu 3 311 -2 737 229 105 74 chr1 72628004 72628357 -170035996 - MLT1J LTR MaLR -18 493 130 2956 149 131 59 chr1 72629126 72629869 -170034484 - MER21A LTR ERV1 -6 925 130 234 91 0 0 chr1 72629869 72629902 -170034451 + (GA)n Simple_repeat Simple_repeat 1 33 0 421 105 86 0 chr1 72629954 72630116 -170034237 + (TA)n Simple_repeat Simple_repeat 1 176 0 290 120 51 34 chr1 72630095 72630212 -170034141 + (TATAA)n Simple_repeat Simple_repeat 5 123 0 * 1493 186 77 57 chr1 72630212 72630403 -170033950 + MSTD LTR MaLR 1 187 -209 2860 19 0 0 chr1 72630403 72630720 -170033633 - AluYb8 SINE Alu -1 317 1 1493 186 77 57 chr1 72630720 72630916 -170033437 + MSTD LTR MaLR 187 396 0 318 237 0 0 chr1 72631070 72631129 -170033224 - L2 LINE L2 -1 3271 3213 291 243 174 7 chr1 72631243 72631387 -170032966 + MER104 DNA Tc2 9 176 -4 1981 98 23 0 chr1 72631439 72631613 -170032740 - AluSx SINE Alu -8 304 120 207 0 0 0 chr1 72631613 72631636 -170032717 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1981 98 23 0 chr1 72631636 72631726 -170032627 - AluSx SINE Alu -192 120 34 263 171 132 52 chr1 72631870 72631950 -170032403 + MIR SINE MIR 40 122 -87 275 246 15 0 chr1 72632639 72632704 -170031649 - Charlie8 DNA MER1_type -4 2413 2348 299 200 50 88 chr1 72633201 72633361 -170030992 + MER112 DNA MER1_type 12 165 -95 316 393 28 21 chr1 72633446 72633591 -170030762 - L2 LINE L2 0 3272 3127 633 265 12 18 chr1 72633784 72633954 -170030399 - MIR SINE MIR -49 213 45 1814 111 107 4 chr1 72633961 72634231 -170030122 - AluSc SINE Alu -11 298 1 465 62 0 0 chr1 72634838 72634903 -170029450 + (TC)n Simple_repeat Simple_repeat 1 65 0 207 0 0 0 chr1 72634903 72634926 -170029427 + (TA)n Simple_repeat Simple_repeat 2 24 0 253 160 0 0 chr1 72635411 72635461 -170028892 - AluJb SINE Alu -2 300 251 21 36 0 0 chr1 72635684 72635712 -170028641 + AT_rich Low_complexity Low_complexity 1 28 0 313 163 81 23 chr1 72636387 72636473 -170027880 - MER69 DNA AcHobo -9 2517 2427 270 209 0 66 chr1 72637128 72637219 -170027134 + C-rich Low_complexity Low_complexity 1 85 0 23 0 0 0 chr1 72637528 72637551 -170026802 + AT_rich Low_complexity Low_complexity 1 23 0 203 671 0 12 chr1 72638086 72638253 -170026100 + G-rich Low_complexity Low_complexity 1 165 0 2385 91 0 0 chr1 72639199 72639506 -170024847 - AluSx SINE Alu -3 309 3 350 180 281 36 chr1 72639841 72639980 -170024373 - L2 LINE L2 -9 3263 3091 1921 135 11 0 chr1 72640788 72641062 -170023291 - AluSx SINE Alu -14 298 22 1755 143 0 42 chr1 72641062 72641348 -170023005 - AluJb SINE Alu -38 274 1 250 283 129 17 chr1 72641460 72641594 -170022759 - MIR SINE MIR -59 149 3 32 75 0 0 chr1 72642132 72642199 -170022154 + AT_rich Low_complexity Low_complexity 1 67 0 2268 105 7 0 chr1 72642467 72642771 -170021582 - AluSx SINE Alu -6 306 1 544 278 153 51 chr1 72642927 72643240 -170021113 - L3 LINE CR1 -71 1506 1162 235 160 0 60 chr1 72643467 72643517 -170020836 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 526 270 61 7 chr1 72643615 72643763 -170020590 - MIR SINE MIR -26 236 81 359 341 78 67 chr1 72644236 72644582 -170019771 + L2 LINE L2 2922 3271 -1 269 267 0 0 chr1 72645372 72645432 -170018921 - HsTC2 DNA Tc2 -1348 550 491 203 350 171 24 chr1 72645804 72646050 -170018303 - L2 LINE L2 -182 3090 2809 856 143 198 51 chr1 72646129 72646366 -170017987 - ORSL DNA AcHobo -1 274 3 2818 79 22 5 chr1 72646491 72646859 -170017494 + L1PA11 LINE L1 5800 6173 -1 195 185 111 0 chr1 72646866 72646920 -170017433 - MER5A DNA MER1_type -50 139 80 201 108 0 0 chr1 72647603 72647640 -170016713 + (A)n Simple_repeat Simple_repeat 1 37 0 385 306 14 14 chr1 72647776 72647923 -170016430 + CT-rich Low_complexity Low_complexity 3 149 0 331 296 31 41 chr1 72648388 72648486 -170015867 + MIR3 SINE MIR 12 108 -100 802 352 61 9 chr1 72648575 72649035 -170015318 - L2 LINE L2 0 3313 2830 1665 158 24 24 chr1 72649181 72649478 -170014875 - AluJo SINE Alu -15 297 1 942 141 11 51 chr1 72649488 72649665 -170014688 - L1MC1 LINE L1 0 6333 6164 650 311 43 20 chr1 72650539 72650793 -170013560 - L1MC1 LINE L1 -2108 5700 5441 405 237 72 14 chr1 72650874 72651013 -170013340 - L1ME4a LINE L1 -4 6117 5971 555 274 33 93 chr1 72651044 72651192 -170013161 + MIR SINE MIR 5 160 -102 1946 146 164 11 chr1 72651192 72651563 -170012790 + MSTA LTR MaLR 1 428 0 1624 174 16 54 chr1 72651573 72651889 -170012464 - AluJb SINE Alu -8 304 1 555 274 33 93 chr1 72651889 72651999 -170012354 + MIR SINE MIR 169 258 -4 1044 171 0 6 chr1 72652149 72652325 -170012028 - AluJ SINE Alu -4 308 134 184 30 61 0 chr1 72652325 72652358 -170011995 + T-rich Low_complexity Low_complexity 137 171 0 2011 121 0 7 chr1 72652358 72652640 -170011713 - AluSg1 SINE Alu -29 280 1 1328 158 9 18 chr1 72652689 72652910 -170011443 + MER20 DNA MER1_type 1 219 0 403 258 216 5 chr1 72653321 72653511 -170010842 + MIR SINE MIR 1 230 -32 1740 135 29 122 chr1 72653672 72654056 -170010297 - MER7A DNA MER2_type 0 346 1 320 180 33 0 chr1 72654195 72654256 -170010097 - MIR3 SINE MIR -48 160 98 186 296 230 30 chr1 72655072 72655207 -170009146 - L2 LINE L2 -224 3048 2887 354 188 0 93 chr1 72655671 72655790 -170008563 + L1ME LINE L1 5695 5804 -317 839 145 0 38 chr1 72655865 72655996 -170008357 - AluJ SINE Alu -186 126 1 1295 193 91 30 chr1 72656307 72656638 -170007715 - L1MD2 LINE L1 -1 6358 6008 271 313 25 12 chr1 72656879 72656959 -170007394 + L2 LINE L2 3009 3089 -183 41 66 0 0 chr1 72657447 72657523 -170006830 + AT_rich Low_complexity Low_complexity 1 76 0 210 332 37 24 chr1 72657562 72657664 -170006689 - MIR SINE MIR -100 108 1 247 331 34 46 chr1 72657746 72657921 -170006432 - L3 LINE CR1 -106 1471 1299 262 275 130 0 chr1 72657956 72658025 -170006328 - MIR3 SINE MIR -27 181 104 * 351 304 126 22 chr1 72658022 72658252 -170006101 - L3 LINE CR1 -289 1288 1035 1256 237 104 55 chr1 72658376 72658442 -170005911 - MLT1J LTR MaLR -16 495 434 2256 78 3 0 chr1 72658442 72658748 -170005605 - AluY SINE Alu 0 307 1 1256 237 104 55 chr1 72658748 72659152 -170005201 - MLT1J LTR MaLR -77 434 1 403 284 95 37 chr1 72659328 72659518 -170004835 - MIR SINE MIR 0 262 62 202 111 83 0 chr1 72659823 72659859 -170004494 - MIR SINE MIR -113 149 111 235 238 16 16 chr1 72660425 72660488 -170003865 + MLT1J1 LTR MaLR 361 423 -23 595 244 30 37 chr1 72661392 72661556 -170002797 - MIR SINE MIR -50 212 50 2954 92 3 13 chr1 72662141 72662520 -170001833 - THE1C LTR MaLR 0 375 1 563 202 94 69 chr1 72662565 72662768 -170001585 - L1MC5 LINE L1 -52 7909 7702 276 259 0 0 chr1 72662769 72662823 -170001530 + FRAM/FAM SINE Alu 1 52 -114 1944 198 93 74 chr1 72662862 72663095 -170001258 - L1MC5 LINE L1 -254 7707 7480 189 0 0 0 chr1 72663095 72663116 -170001237 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1944 198 93 74 chr1 72663116 72663667 -170000686 - L1MC5 LINE L1 -481 7480 6908 1337 158 164 24 chr1 72663667 72663965 -170000388 - MER2 DNA MER2_type 0 345 6 1199 239 33 7 chr1 72663965 72664266 -170000087 - L1MC4 LINE L1 -1029 7013 6705 268 262 140 81 chr1 72664306 72664741 -169999612 - L1MC4a LINE L1 -1293 6515 6055 313 339 63 0 chr1 72664843 72664970 -169999383 - L2 LINE L2 -765 2549 2415 365 281 57 81 chr1 72665045 72665255 -169999098 + L2 LINE L2 3068 3272 0 354 295 101 23 chr1 72665292 72665421 -169998932 - MIR SINE MIR -95 167 29 305 288 245 7 chr1 72665480 72665619 -169998734 + MIR SINE MIR 73 244 -18 310 293 40 0 chr1 72666127 72666226 -169998127 - MIR3 SINE MIR -22 186 84 592 328 25 10 chr1 72666595 72666796 -169997557 + MIR SINE MIR 11 214 -48 343 249 79 91 chr1 72666931 72667096 -169997257 - MER5A DNA MER1_type -25 164 2 333 336 51 0 chr1 72667123 72667260 -169997093 + MIR SINE MIR 90 233 -29 386 282 130 28 chr1 72668258 72668331 -169996022 + MIR SINE MIR 22 86 -176 2197 188 0 21 chr1 72668331 72668704 -169995649 + MLT1A1 LTR MaLR 1 365 0 386 282 130 28 chr1 72668704 72668846 -169995507 + MIR SINE MIR 86 259 -3 4180 182 34 6 chr1 72669434 72670147 -169994206 + MER44D DNA MER2_type 1 605 0 342 0 0 0 chr1 72671325 72671363 -169992990 + (TG)n Simple_repeat Simple_repeat 2 39 0 557 268 30 45 chr1 72671473 72671671 -169992682 - MIR SINE MIR -65 197 3 307 181 26 136 chr1 72673206 72673361 -169990992 + L1ME4a LINE L1 5870 6007 -114 201 211 56 14 chr1 72673623 72673694 -169990659 + (TATAA)n Simple_repeat Simple_repeat 1 74 0 276 185 0 0 chr1 72673811 72673865 -169990488 + (CA)n Simple_repeat Simple_repeat 1 54 0 1316 308 119 12 chr1 72674307 72675701 -169988652 - L1MEc LINE L1 -3373 2842 1343 930 219 4 75 chr1 72675701 72675929 -169988424 + MER20 DNA MER1_type 1 212 -7 806 265 108 101 chr1 72675976 72677246 -169987107 - L1MEc LINE L1 -5103 1293 15 187 294 20 0 chr1 72677249 72677300 -169987053 - MER5A DNA MER1_type -137 52 1 2379 81 3 3 chr1 72677636 72677932 -169986421 - AluSq SINE Alu -17 296 1 304 56 0 0 chr1 72678289 72678325 -169986028 - tRNA-Arg-AGA tRNA tRNA -40 36 1 245 274 186 0 chr1 72678341 72678454 -169985899 + MIR SINE MIR 104 237 -25 254 350 62 69 chr1 72679883 72680043 -169984310 - L2 LINE L2 -9 3263 3105 196 311 193 19 chr1 72680124 72680336 -169984017 + MIR SINE MIR 2 250 -12 222 349 0 0 chr1 72680355 72680418 -169983935 - L3 LINE CR1 0 1577 1515 1741 151 47 7 chr1 72680861 72681159 -169983194 + AluJb SINE Alu 1 310 -2 207 0 0 0 chr1 72681749 72681772 -169982581 + (T)n Simple_repeat Simple_repeat 1 23 0 217 271 260 21 chr1 72681839 72681935 -169982418 - MIR SINE MIR -107 155 37 1867 156 28 0 chr1 72682159 72682490 -169981863 + AluSx SINE Alu 4 342 0 295 389 0 0 chr1 72682627 72682735 -169981618 - MIR SINE MIR -129 133 26 2299 107 0 0 chr1 72683763 72684072 -169980281 + AluSx SINE Alu 1 309 -3 930 273 41 4 chr1 72684188 72684430 -169979923 + MIR SINE MIR 12 262 0 1602 204 72 3 chr1 72685575 72685893 -169978460 - MER58B DNA MER1_type 0 341 2 434 275 47 27 chr1 72686893 72687042 -169977311 + MIR SINE MIR 1 152 -110 826 308 72 16 chr1 72687386 72687773 -169976580 + L1ME LINE L1 5369 5777 -385 813 230 11 5 chr1 72688032 72688219 -169976134 + MIR SINE MIR 74 261 -1 611 254 147 15 chr1 72688416 72688613 -169975740 - MIR SINE MIR -31 231 9 627 246 4 93 chr1 72688679 72688768 -169975585 - MLT1I LTR MaLR 0 409 314 1816 168 81 31 chr1 72688768 72689125 -169975228 - THE1C LTR MaLR 0 375 1 627 246 4 93 chr1 72689125 72689271 -169975082 - MLT1I LTR MaLR -95 314 195 297 89 0 0 chr1 72689275 72689320 -169975033 + (GA)n Simple_repeat Simple_repeat 2 46 0 1322 126 0 113 chr1 72689423 72689670 -169974683 + MER20 DNA MER1_type 1 219 0 1365 223 26 7 chr1 72689957 72690267 -169974086 - MER33 DNA MER1_type 0 324 9 392 302 94 26 chr1 72690857 72691049 -169973304 + MIR SINE MIR 1 205 -57 319 258 10 41 chr1 72692876 72692973 -169971380 + MIR3 SINE MIR 111 204 -4 690 152 177 25 chr1 72693016 72693174 -169971179 - MER5A DNA MER1_type -7 182 1 537 95 152 36 chr1 72693741 72693878 -169970475 - L1PA4 LINE L1 0 6172 6007 25 0 0 0 chr1 72693878 72693903 -169970450 + AT_rich Low_complexity Low_complexity 1 25 0 214 375 0 0 chr1 72694149 72694221 -169970132 + L2 LINE L2 2786 2857 -457 263 64 64 39 chr1 72694345 72694423 -169969930 + CT-rich Low_complexity Low_complexity 4 83 0 713 173 12 12 chr1 72694436 72694604 -169969749 + CT-rich Low_complexity Low_complexity 1 168 0 389 119 0 17 chr1 72694604 72694663 -169969690 + (TCCCC)n Simple_repeat Simple_repeat 2 59 0 1810 151 19 0 chr1 72694667 72694938 -169969415 - AluSx SINE Alu -36 276 1 629 196 33 7 chr1 72696112 72696265 -169968088 - L1MB4 LINE L1 -5 6175 6019 282 231 120 60 chr1 72697132 72697249 -169967104 + MIR SINE MIR 47 170 -92 378 0 0 0 chr1 72698014 72698056 -169966297 + (TG)n Simple_repeat Simple_repeat 2 43 0 408 284 52 45 chr1 72698248 72698382 -169965971 - L2 LINE L2 0 3272 3138 391 281 96 7 chr1 72698446 72698581 -169965772 - MIR SINE MIR -73 189 43 12650 165 25 18 chr1 72698825 72700843 -169963510 - L1MA4 LINE L1 -292 6008 4007 2134 104 28 3 chr1 72700843 72701132 -169963221 - AluSq SINE Alu -17 296 1 12650 165 25 18 chr1 72701132 72701294 -169963059 - L1MA4 LINE L1 -2293 4007 3848 2405 74 0 3 chr1 72701294 72701593 -169962760 - AluY SINE Alu -13 298 1 12650 165 25 18 chr1 72701593 72702619 -169961734 - L1MA4 LINE L1 -2452 3848 2768 1944 124 22 4 chr1 72702619 72702930 -169961423 - AluSg SINE Alu 0 316 1 12650 165 25 18 chr1 72702930 72703070 -169961283 - L1MA4 LINE L1 -3532 2768 2631 373 273 38 133 chr1 72703755 72704155 -169960198 + L2 LINE L2 2376 2737 -577 321 232 161 52 chr1 72704273 72704428 -169959925 - MIR SINE MIR 0 262 91 378 270 158 0 chr1 72704556 72704689 -169959664 + MIR SINE MIR 40 188 -62 2384 82 0 3 chr1 72706775 72707080 -169957273 - AluSc SINE Alu 0 309 6 24 32 0 0 chr1 72707393 72707424 -169956929 + AT_rich Low_complexity Low_complexity 1 31 0 977 277 57 23 chr1 72707670 72708020 -169956333 + L2 LINE L2 2925 3286 -27 195 42 0 0 chr1 72709108 72709132 -169955221 + (TG)n Simple_repeat Simple_repeat 2 25 0 207 333 35 35 chr1 72709391 72709478 -169954875 + L2 LINE L2 3180 3266 -6 188 278 83 102 chr1 72709662 72709770 -169954583 - L2 LINE L2 -94 3178 3073 316 257 174 21 chr1 72710340 72710484 -169953869 + MIR SINE MIR 65 230 -32 1315 178 53 61 chr1 72710715 72711075 -169953278 - L1MB1 LINE L1 0 6168 5812 1953 140 3 3 chr1 72711096 72711381 -169952972 + AluJb SINE Alu 5 289 -23 4959 141 25 11 chr1 72711383 72712304 -169952049 - L1MA8 LINE L1 0 6291 5358 490 167 0 0 chr1 72712330 72712426 -169951927 - L1MA8 LINE L1 -1094 5052 4957 273 189 75 28 chr1 72712436 72712542 -169951811 - L1MB1 LINE L1 -940 5206 5096 303 261 76 42 chr1 72712542 72712661 -169951692 - MIR SINE MIR -111 151 29 1483 309 168 28 chr1 72713654 72714850 -169949503 + L3 LINE CR1 135 1498 -79 1316 149 52 99 chr1 72714853 72714970 -169949383 - MLT1A1 LTR MaLR 0 365 244 799 169 0 22 chr1 72714970 72715106 -169949247 - FLAM_C SINE Alu 0 133 1 1316 149 52 99 chr1 72715106 72715371 -169948982 - MLT1A1 LTR MaLR -121 244 1 2486 105 14 6 chr1 72716083 72716444 -169947909 - THE1B LTR MaLR 0 364 1 231 254 0 34 chr1 72716535 72716594 -169947759 - MIR3 SINE MIR -18 190 134 407 245 41 20 chr1 72717240 72717338 -169947015 - MIR3 SINE MIR -21 187 88 2127 151 32 37 chr1 72717505 72717969 -169946384 - L1MB7 LINE L1 -19 6165 5704 315 357 117 40 chr1 72717982 72718383 -169945970 - L2 LINE L2 -5 3267 2836 275 213 0 16 chr1 72719270 72719331 -169945022 - MIR SINE MIR -109 153 94 1445 205 40 7 chr1 72719951 72720229 -169944124 + AluJo SINE Alu 3 289 -23 393 247 106 41 chr1 72721900 72722070 -169942283 - L2 LINE L2 0 3313 3133 880 248 104 0 chr1 72722077 72722299 -169942054 - MIR SINE MIR 0 262 18 250 389 111 8 chr1 72722384 72722510 -169941843 - L2 LINE L2 0 3272 3134 382 133 0 33 chr1 72722556 72722616 -169941737 + MER5B DNA MER1_type 121 178 0 362 222 162 0 chr1 72722772 72722871 -169941482 + L2 LINE L2 3158 3272 0 196 222 22 0 chr1 72723157 72723202 -169941151 - L2 LINE L2 -10 3303 3258 332 351 18 0 chr1 72723374 72723485 -169940868 + L2 LINE L2 3201 3313 0 191 103 26 0 chr1 72723487 72723526 -169940827 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 556 297 39 40 chr1 72723695 72723941 -169940412 + MIR SINE MIR 6 259 -3 421 265 54 69 chr1 72724454 72724658 -169939695 + MIR SINE MIR 3 203 -59 416 235 47 0 chr1 72725339 72725424 -169938929 + L2 LINE L2 3168 3256 -16 322 229 0 0 chr1 72725871 72725932 -169938421 - MIR SINE MIR -5 257 197 1491 194 12 0 chr1 72725938 72726196 -169938157 + Tigger7 DNA MER2_type 7 267 -2220 503 167 0 22 chr1 72726209 72726299 -169938054 + Tigger7 DNA MER2_type 2404 2491 0 617 236 8 0 chr1 72726338 72726465 -169937888 - MIR SINE MIR -133 129 2 345 283 132 0 chr1 72726628 72726734 -169937619 - L2 LINE L2 -5 3308 3189 1044 232 25 25 chr1 72726857 72727098 -169937255 - MIR SINE MIR -14 248 8 203 289 10 77 chr1 72727394 72727498 -169936855 + MIR SINE MIR 120 216 -46 1924 162 14 27 chr1 72727817 72728187 -169936166 - MLT1A1 LTR MaLR 0 365 1 265 329 105 20 chr1 72729642 72729794 -169934559 - L2 LINE L2 -4 3268 3104 1850 163 3 10 chr1 72730627 72730928 -169933425 + AluJb SINE Alu 3 301 -11 378 61 0 0 chr1 72734388 72734437 -169929916 + (CA)n Simple_repeat Simple_repeat 2 50 0 1058 165 5 11 chr1 72734756 72734944 -169929409 + U2 snRNA snRNA 1 187 -1 180 0 0 0 chr1 72734957 72734977 -169929376 + (CAA)n Simple_repeat Simple_repeat 2 21 0 240 259 51 78 chr1 72735123 72735174 -169929179 + MIR SINE MIR 30 81 -128 1702 162 24 3 chr1 72735174 72735464 -169928889 - AluJo SINE Alu -16 296 1 240 259 51 78 chr1 72735464 72735528 -169928825 + MIR SINE MIR 81 143 -66 28 29 0 0 chr1 72736007 72736042 -169928311 + AT_rich Low_complexity Low_complexity 1 35 0 1747 196 59 76 chr1 72737277 72737817 -169926536 - MER34B LTR ERV1 0 565 35 228 86 0 0 chr1 72737798 72737833 -169926520 - MER34C LTR ERV1 -484 101 67 * 273 316 90 0 chr1 72738247 72738380 -169925973 + MIR3 SINE MIR 37 181 -27 25 0 0 0 chr1 72738503 72738528 -169925825 + AT_rich Low_complexity Low_complexity 1 25 0 433 305 127 76 chr1 72739042 72739730 -169924623 - L1M2 LINE L1 -5541 1308 586 812 201 6 6 chr1 72740284 72740463 -169923890 - L1MB7 LINE L1 -36 6148 5970 622 262 80 71 chr1 72740759 72741083 -169923270 - L2 LINE L2 0 3272 2946 774 320 119 33 chr1 72741091 72741914 -169922439 - L2 LINE L2 0 3313 2411 2334 92 0 3 chr1 72741914 72742209 -169922144 + AluSc SINE Alu 1 294 -15 339 221 58 0 chr1 72742405 72742491 -169921862 - MIR SINE MIR -108 154 64 1644 145 52 7 chr1 72742491 72742780 -169921573 + AluJo SINE Alu 3 304 -8 682 143 0 34 chr1 72742983 72743102 -169921251 - AluJo SINE Alu -161 151 37 822 181 68 63 chr1 72743141 72743362 -169920991 + MER58A DNA MER1_type 3 224 0 25 31 0 0 chr1 72743383 72743415 -169920938 + AT_rich Low_complexity Low_complexity 1 32 0 252 298 29 19 chr1 72743572 72743676 -169920677 + MIR3 SINE MIR 97 201 -7 24 0 0 0 chr1 72744184 72744208 -169920145 + AT_rich Low_complexity Low_complexity 1 24 0 603 323 61 27 chr1 72744274 72744679 -169919674 - L2 LINE L2 -160 3153 2731 187 350 58 44 chr1 72744678 72744815 -169919538 - L2 LINE L2 0 3313 3175 * 196 335 110 47 chr1 72746176 72746367 -169917986 - L2 LINE L2 -413 2901 2699 391 262 0 0 chr1 72747533 72747617 -169916736 + MER5A DNA MER1_type 12 95 -94 868 146 100 57 chr1 72747868 72748148 -169916205 + L1MA7 LINE L1 6000 6291 0 1706 174 58 25 chr1 72749162 72749525 -169914828 + THE1C LTR MaLR 1 375 0 2289 166 14 21 chr1 72749645 72750072 -169914281 + Tigger2a DNA MER2_type 1 424 -10 282 338 89 55 chr1 72750243 72750406 -169913947 + L2 LINE L2 1913 2088 -1226 1734 178 43 94 chr1 72750406 72750896 -169913457 - MLT1C LTR MaLR -2 465 1 282 338 89 55 chr1 72750896 72750969 -169913384 + L2 LINE L2 2088 2157 -1157 1682 179 40 63 chr1 72751320 72751717 -169912636 + MLT1B LTR MaLR 3 390 0 855 284 199 10 chr1 72751729 72752131 -169912222 - L2 LINE L2 -18 3295 2818 243 125 0 0 chr1 72752240 72752280 -169912073 + (GA)n Simple_repeat Simple_repeat 1 40 0 8136 186 45 17 chr1 72752282 72753046 -169911307 + L1MC3 LINE L1 5874 6615 -1170 333 0 0 0 chr1 72753046 72753083 -169911270 + (CA)n Simple_repeat Simple_repeat 2 38 0 8136 186 45 17 chr1 72753083 72754178 -169910175 + L1MC3 LINE L1 6615 7785 0 466 222 74 9 chr1 72754185 72754293 -169910060 + MER5B DNA MER1_type 64 178 0 785 290 162 16 chr1 72754687 72755114 -169909239 + LTR33 LTR ERVL 33 521 0 2927 127 47 164 chr1 72755902 72756310 -169908043 - L1MA7 LINE L1 -1 6290 6054 2147 124 0 0 chr1 72756310 72756600 -169907753 - AluSx SINE Alu -22 290 1 2927 127 47 164 chr1 72756600 72757138 -169907215 - L1MA7 LINE L1 -237 6054 5455 2494 61 3 3 chr1 72758684 72758994 -169905359 - AluY SINE Alu -1 310 1 424 179 119 0 chr1 72760601 72760685 -169903668 - FLAM_A SINE Alu -23 119 26 911 131 42 6 chr1 72760690 72760858 -169903495 + L1MB5 LINE L1 5731 5904 -270 813 73 18 0 chr1 72760870 72760980 -169903373 + AluSg/x SINE Alu 177 288 -22 244 285 139 7 chr1 72760980 72761124 -169903229 - L2 LINE L2 -110 3203 3041 1134 272 18 14 chr1 72761161 72761437 -169902916 - AluJo SINE Alu -35 277 1 189 0 0 0 chr1 72761440 72761461 -169902892 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr1 72761502 72761525 -169902828 + AT_rich Low_complexity Low_complexity 1 23 0 2462 76 0 0 chr1 72761596 72761899 -169902454 + AluSc SINE Alu 1 303 -6 527 209 29 0 chr1 72762591 72762730 -169901623 + L1M4 LINE L1 4720 4862 -1284 257 208 0 0 chr1 72762773 72762821 -169901532 - L2 LINE L2 -87 3226 3179 2384 86 0 35 chr1 72762861 72763175 -169901178 + AluSq SINE Alu 1 303 -10 1156 110 6 39 chr1 72763175 72763357 -169900996 + AluSg/x SINE Alu 137 312 0 901 228 120 67 chr1 72763560 72764174 -169900179 - L2 LINE L2 0 3313 2674 23 0 0 0 chr1 72765489 72765512 -169898841 + AT_rich Low_complexity Low_complexity 1 23 0 1811 137 30 76 chr1 72765545 72765938 -169898415 + MER4E LTR ERV1 405 779 0 310 254 49 8 chr1 72765938 72766060 -169898293 + L1ME3A LINE L1 6036 6162 -8 242 299 64 16 chr1 72766411 72766598 -169897755 + L1M4 LINE L1 4168 4363 -1783 856 133 0 0 chr1 72766600 72766720 -169897633 + FLAM_C SINE Alu 3 122 -11 31 0 0 0 chr1 72766761 72766792 -169897561 + AT_rich Low_complexity Low_complexity 1 31 0 879 143 18 69 chr1 72767031 72767247 -169897106 + LTR49 LTR ERV1 5 200 -395 2094 16 0 0 chr1 72767283 72767536 -169896817 - L1HS LINE L1 0 6155 5903 519 193 67 107 chr1 72767541 72767905 -169896448 + LTR48 LTR ERV1 207 756 -24 21 0 0 0 chr1 72768052 72768073 -169896280 + AT_rich Low_complexity Low_complexity 1 21 0 182 330 99 33 chr1 72768218 72768309 -169896044 - MIR SINE MIR -79 129 33 264 333 35 0 chr1 72768380 72768467 -169895886 + MER94 DNA DNA 22 111 -23 799 222 23 3 chr1 72769401 72769620 -169894733 - L1M4 LINE L1 -491 5963 5740 1374 118 23 5 chr1 72769620 72769840 -169894513 - MER41B LTR ERV1 -262 373 150 597 252 29 0 chr1 72769852 72770062 -169894291 - L1M4 LINE L1 -743 5683 5468 790 178 41 86 chr1 72770101 72770162 -169894191 - L1M4 LINE L1 -943 5483 5421 1985 123 0 0 chr1 72770162 72770431 -169893922 - AluJb SINE Alu -18 294 26 790 178 41 86 chr1 72770431 72770683 -169893670 - L1M4 LINE L1 -1005 5421 5184 * 4622 236 17 16 chr1 72770679 72770848 -169893505 - L1M4 LINE L1 -1605 4821 4654 1537 175 0 31 chr1 72770848 72771134 -169893219 - AluJb SINE Alu -4 308 32 4622 236 17 16 chr1 72771134 72772207 -169892146 - L1M4 LINE L1 -1772 4654 3575 1909 145 47 0 chr1 72772207 72772504 -169891849 - AluSx SINE Alu -1 311 1 4622 236 17 16 chr1 72772504 72772589 -169891764 - L1M4 LINE L1 -2851 3575 3492 246 186 97 21 chr1 72773002 72773147 -169891206 - L1M4 LINE L1 -2912 3514 3359 1513 237 35 2 chr1 72773250 72773681 -169890672 - L1M4 LINE L1 -3055 3371 2927 18343 30 1 0 chr1 72773718 72776697 -169887656 - L1PA3 LINE L1 -4 6151 3171 21497 41 46 3 chr1 72776797 72779636 -169884717 - L1PA3 LINE L1 -3186 2960 1 2523 206 44 11 chr1 72779635 72780638 -169883715 - L1MCa LINE L1 -3492 2934 1899 * 1153 134 31 0 chr1 72780620 72780844 -169883509 - L1MCa LINE L1 -5135 1291 1061 * 867 196 59 18 chr1 72780857 72781076 -169883277 - L1PB4 LINE L1 -5 6151 5924 2273 176 54 28 chr1 72781579 72782329 -169882024 - L1MCa LINE L1 -4507 2057 1203 446 150 12 0 chr1 72782330 72782410 -169881943 - L1MCa LINE L1 -5107 938 858 597 262 22 11 chr1 72782844 72783027 -169881326 - LTR41 LTR ERVL -586 187 3 666 309 129 29 chr1 72783118 72783536 -169880817 + L2 LINE L2 2854 3313 0 441 203 85 8 chr1 72783537 72783655 -169880698 - MIR SINE MIR -115 147 21 1629 127 154 0 chr1 72783930 72784197 -169880156 + AluSg SINE Alu 1 308 -2 2126 130 10 0 chr1 72784294 72784602 -169879751 - AluSx SINE Alu -1 311 1 1505 171 56 35 chr1 72784602 72784976 -169879377 + L1MC3 LINE L1 6716 7097 -688 241 284 32 11 chr1 72784976 72785071 -169879282 + MLT1F1 LTR MaLR 35 131 -436 1087 202 86 0 chr1 72785072 72785315 -169879038 + L1MC3 LINE L1 7201 7464 -321 34199 102 10 20 chr1 72785330 72791530 -169872823 - L1PA6 LINE L1 -11 6143 11 1051 168 92 62 chr1 72791543 72791847 -169872506 + L1MC3 LINE L1 7473 7785 0 505 243 32 120 chr1 72792148 72792432 -169871921 - MER102b DNA MER1_type -8 333 75 281 264 68 27 chr1 72794237 72794385 -169869968 - MARNA DNA Mariner -283 303 150 191 322 11 44 chr1 72794571 72794661 -169869692 - L2 LINE L2 -18 3254 3168 285 297 42 25 chr1 72795047 72795165 -169869188 - L2 LINE L2 -217 3055 2936 306 0 0 0 chr1 72795771 72795805 -169868548 + (CA)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr1 72795810 72795836 -169868517 + AT_rich Low_complexity Low_complexity 1 26 0 297 0 0 0 chr1 72795975 72796008 -169868345 + (CA)n Simple_repeat Simple_repeat 2 34 0 544 274 132 24 chr1 72796239 72796451 -169867902 - L3 LINE CR1 -9 1568 1334 265 276 71 16 chr1 72796471 72796598 -169867755 - MIR SINE MIR -18 244 111 547 305 128 0 chr1 72796920 72797146 -169867207 + MIR SINE MIR 8 262 0 482 271 17 8 chr1 72797301 72797419 -169866934 - L3 LINE CR1 -824 753 635 2447 86 0 3 chr1 72798085 72798389 -169865964 + AluSg SINE Alu 1 303 -7 254 342 0 13 chr1 72798598 72798677 -169865676 + MLT1K LTR MaLR 14 91 -497 1935 142 3 7 chr1 72799093 72799396 -169864957 + AluJb SINE Alu 1 302 -10 399 298 44 0 chr1 72799702 72799816 -169864537 - L2 LINE L2 -7 3265 3147 200 231 77 60 chr1 72799997 72800114 -169864239 - MIR SINE MIR 0 262 144 181 372 12 35 chr1 72800246 72800332 -169864021 - MER5A DNA MER1_type -7 182 99 476 242 16 16 chr1 72800663 72800787 -169863566 + L2 LINE L2 3190 3313 0 223 329 0 14 chr1 72801537 72801610 -169862743 + MIR3 SINE MIR 12 83 -125 346 308 112 0 chr1 72802475 72802618 -169861735 - MIR3 SINE MIR -18 190 32 480 228 80 43 chr1 72802691 72802853 -169861500 - MIR SINE MIR -36 226 59 256 24 24 24 chr1 72803269 72803311 -169861042 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 295 285 73 0 chr1 72803868 72803991 -169860362 + L1MC/D LINE L1 2883 3014 -3132 541 230 9 0 chr1 72804050 72804163 -169860190 - MIR SINE MIR -113 149 36 2011 177 20 35 chr1 72804294 72804690 -169859663 - MLT1B LTR MaLR 0 390 1 342 251 119 36 chr1 72804901 72805120 -169859233 + L1MC/D LINE L1 3598 3834 -2312 556 271 126 68 chr1 72805224 72805477 -169858876 + L1MC/D LINE L1 4150 4387 -1759 231 36 0 0 chr1 72805477 72805505 -169858848 + (CA)n Simple_repeat Simple_repeat 2 29 0 556 271 126 68 chr1 72805505 72806065 -169858288 + L1MC/D LINE L1 4387 5046 -1100 2358 94 0 7 chr1 72806065 72806364 -169857989 + AluSg SINE Alu 1 297 -13 556 271 126 68 chr1 72806364 72806641 -169857712 + L1MC/D LINE L1 5046 5305 -841 287 171 44 29 chr1 72806651 72806781 -169857572 + L1MC/D LINE L1 5391 5525 -881 559 288 162 32 chr1 72806928 72807288 -169857065 + L2 LINE L2 2772 3162 -151 501 200 0 0 chr1 72807289 72807379 -169856974 - AluJo SINE Alu -3 309 220 * 783 196 7 0 chr1 72807378 72807516 -169856837 - AluJo SINE Alu -173 139 1 211 269 58 0 chr1 72807561 72807613 -169856740 + L2 LINE L2 3237 3291 -22 319 304 43 0 chr1 72808459 72808551 -169855802 + MIR SINE MIR 44 139 -123 398 250 74 54 chr1 72808635 72808783 -169855570 - MIR SINE MIR -4 258 108 364 341 141 20 chr1 72809321 72809620 -169854733 - L3 LINE CR1 -12 1565 1231 366 279 0 19 chr1 72809624 72809728 -169854625 + L2 LINE L2 3171 3272 0 218 277 12 48 chr1 72810386 72810469 -169853884 - L3 LINE CR1 -619 958 879 182 205 0 0 chr1 72810508 72810547 -169853806 - L2 LINE L2 -3 3310 3272 257 186 17 0 chr1 72810832 72810891 -169853462 + (TA)n Simple_repeat Simple_repeat 1 60 0 835 121 36 24 chr1 72811070 72811235 -169853118 - L1MA3 LINE L1 0 6305 6139 777 92 16 49 chr1 72811235 72811419 -169852934 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 * 1132 97 17 0 chr1 72811407 72811443 -169852910 + (TTTC)n Simple_repeat Simple_repeat 1 215 0 1132 97 17 0 chr1 72811443 72811619 -169852734 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1774 182 13 16 chr1 72811675 72811988 -169852365 - AluJo SINE Alu 0 312 1 5504 144 7 9 chr1 72811988 72813075 -169851278 - L1MA3 LINE L1 -166 6139 5053 664 285 37 19 chr1 72813332 72813557 -169850796 + MIR SINE MIR 16 246 -16 263 277 60 12 chr1 72815748 72815831 -169848522 - L2 LINE L2 -2 3311 3225 23 0 0 0 chr1 72816196 72816219 -169848134 + AT_rich Low_complexity Low_complexity 1 23 0 769 105 9 0 chr1 72816219 72816333 -169848020 - L1PA10 LINE L1 -5 6163 6049 752 76 85 8 chr1 72816904 72817022 -169847331 - L1MB2 LINE L1 -2 6169 6043 6002 147 27 7 chr1 72818260 72819555 -169844798 + L1MA5 LINE L1 4983 6292 -8 1639 171 23 13 chr1 72819650 72819954 -169844399 + AluJb SINE Alu 1 307 -5 489 164 19 19 chr1 72819957 72820061 -169844292 - L1MC3 LINE L1 -16 7769 7666 367 260 100 0 chr1 72820061 72820161 -169844192 - L3 LINE CR1 -76 1501 1392 508 261 164 18 chr1 72820165 72820330 -169844023 + MER5A DNA MER1_type 1 189 0 210 191 0 0 chr1 72820340 72820382 -169843971 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 240 229 0 0 chr1 72820721 72820769 -169843584 - L3 LINE CR1 -284 1293 1246 181 344 0 0 chr1 72821119 72821180 -169843173 - L3 LINE CR1 -346 1231 1171 330 312 32 16 chr1 72821374 72821499 -169842854 - L3 LINE CR1 -467 1110 984 410 358 34 0 chr1 72822826 72823030 -169841323 + MIR SINE MIR 39 249 -13 1923 194 25 43 chr1 72823179 72823618 -169840735 + MLT1C LTR MaLR 37 467 0 573 287 69 10 chr1 72825018 72825220 -169839133 - MIR SINE MIR -48 214 1 568 298 53 22 chr1 72825375 72825600 -169838753 + L3 LINE CR1 1301 1532 -45 1314 200 20 88 chr1 72825654 72826054 -169838299 - MLT1A2 LTR MaLR 0 374 2 30086 25 0 0 chr1 72826243 72830629 -169833724 + L1PA3 LINE L1 1788 6173 0 418 171 0 0 chr1 72830629 72830705 -169833648 - L1MB4 LINE L1 -325 5855 5780 10405 85 2 3 chr1 72830709 72832955 -169831398 + L1PA7 LINE L1 3883 6154 0 201 254 18 0 chr1 72833007 72833062 -169831291 + L2 LINE L2 3257 3312 -1 27 0 0 0 chr1 72833874 72833901 -169830452 + AT_rich Low_complexity Low_complexity 1 27 0 32 57 0 0 chr1 72834186 72834239 -169830114 + AT_rich Low_complexity Low_complexity 1 53 0 1869 148 32 0 chr1 72834298 72834575 -169829778 + AluSx SINE Alu 6 291 -21 7002 164 9 5 chr1 72834778 72836085 -169828268 - L1MB4 LINE L1 -965 5181 3869 290 274 50 91 chr1 72836669 72836910 -169827443 + MLT1K LTR MaLR 326 556 -32 244 234 0 16 chr1 72836901 72836965 -169827388 - MLT1K LTR MaLR -11 577 515 * 372 136 36 7 chr1 72837554 72837648 -169826705 + Alu SINE Alu 241 302 0 664 138 2 9 chr1 72837651 72837773 -169826580 - L1MC3 LINE L1 -3 8039 7665 254 292 69 0 chr1 72837782 72837854 -169826499 - L3 LINE CR1 -109 1468 1392 490 278 167 0 chr1 72837858 72838020 -169826333 + MER5A DNA MER1_type 1 189 0 378 0 0 0 chr1 72838045 72838087 -169826266 + (CA)n Simple_repeat Simple_repeat 2 43 0 1792 153 86 3 chr1 72838490 72838816 -169825537 - MSTA LTR MaLR 0 428 76 1090 106 6 0 chr1 72838811 72838972 -169825381 - MSTA LTR MaLR -266 162 1 * 230 271 135 0 chr1 72841093 72841226 -169823127 - L1ME4a LINE L1 -27 6094 5944 2194 75 0 38 chr1 72842778 72843064 -169821289 + AluSg SINE Alu 11 286 -19 219 36 0 0 chr1 72843064 72843092 -169821261 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 861 298 39 41 chr1 72844268 72844630 -169819723 - L3 LINE CR1 -4 1573 1213 1857 243 17 90 chr1 72844802 72845444 -169818909 - MLT1-int LTR MaLR -492 879 285 989 114 23 19 chr1 72845471 72845777 -169818576 + CT-rich Low_complexity Low_complexity 1 307 0 523 253 53 21 chr1 72845777 72845797 -169818556 - MLT1-int LTR MaLR -1054 317 299 1763 171 0 0 chr1 72845797 72846071 -169818282 - AluJb SINE Alu -36 276 3 523 253 53 21 chr1 72846071 72846240 -169818113 - MLT1-int LTR MaLR -1072 299 122 1405 194 3 58 chr1 72846312 72846473 -169817880 - AluJo SINE Alu -32 280 140 2276 78 3 0 chr1 72846473 72846786 -169817567 - AluY SINE Alu 0 314 1 1405 194 3 58 chr1 72846786 72846917 -169817436 - AluJo SINE Alu -172 140 3 3321 110 26 16 chr1 72846923 72847198 -169817155 + MER75 DNA T2_type 8 292 -222 3407 120 10 2 chr1 72847198 72847705 -169816648 - MER9 LTR ERVK 0 511 1 3321 110 26 16 chr1 72847705 72847931 -169816422 + MER75 DNA T2_type 292 514 0 525 273 93 0 chr1 72847985 72848146 -169816207 - MLT2C1 LTR ERVL -220 177 2 1405 109 0 0 chr1 72848441 72848624 -169815729 + AluSq SINE Alu 1 183 -130 295 266 25 0 chr1 72848996 72849075 -169815278 + MLT1K LTR MaLR 164 244 -344 191 229 0 0 chr1 72849678 72849713 -169814640 + L2 LINE L2 3180 3214 -99 2105 146 7 0 chr1 72849924 72850233 -169814120 - AluSx SINE Alu 0 312 2 1465 223 157 27 chr1 72850365 72850810 -169813543 + MLT1D LTR MaLR 1 503 -2 282 297 28 104 chr1 72851631 72851813 -169812540 - L3 LINE CR1 -6 1571 1404 328 301 144 73 chr1 72851937 72852485 -169811868 + L1M2 LINE L1 657 1243 -5606 21 0 0 0 chr1 72852603 72852624 -169811729 + GC_rich Low_complexity Low_complexity 1 21 0 366 324 40 14 chr1 72853257 72853405 -169810948 + MIR3 SINE MIR 30 181 -27 36 62 0 0 chr1 72855157 72855221 -169809132 + AT_rich Low_complexity Low_complexity 1 64 0 2090 108 0 24 chr1 72855437 72855732 -169808621 - AluSg SINE Alu -22 288 1 900 139 8 0 chr1 72855858 72855987 -169808366 + AluSg1 SINE Alu 1 130 -179 3673 250 56 66 chr1 72856099 72856844 -169807509 + L2 LINE L2 1785 2536 -777 4503 86 7 0 chr1 72856844 72857394 -169806959 - MER41A LTR ERV1 0 554 1 3673 250 56 66 chr1 72857394 72858191 -169806162 + L2 LINE L2 2536 3310 -3 230 164 0 33 chr1 72858284 72858345 -169806008 + CT-rich Low_complexity Low_complexity 2 60 0 282 259 160 38 chr1 72858345 72858607 -169805746 - L1ME LINE L1 -435 5729 5436 400 275 54 5 chr1 72858645 72858799 -169805554 - MLT1I LTR MaLR -1 428 290 2940 164 26 25 chr1 72858980 72859548 -169804805 + L1MB7 LINE L1 5616 6184 0 782 273 58 44 chr1 72859555 72860005 -169804348 + L1M4 LINE L1 4316 4771 -1375 279 247 68 42 chr1 72860118 72860308 -169804045 - L1MEc LINE L1 -3091 3124 2930 * 462 294 15 0 chr1 72860291 72860488 -169803865 - L1MEc LINE L1 -3712 2503 2304 405 276 103 20 chr1 72860495 72860846 -169803507 - L1MEc LINE L1 -3991 2405 2026 442 287 120 23 chr1 72860958 72861174 -169803179 - L2 LINE L2 0 3313 3077 1545 171 62 7 chr1 72861902 72862176 -169802177 - AluJo SINE Alu -23 289 1 1875 262 77 23 chr1 72862528 72862570 -169801783 - HsTC2a DNA Tc2 -1162 738 700 2199 171 25 43 chr1 72862570 72863010 -169801343 + MSTB1 LTR MaLR 1 432 0 1875 262 77 23 chr1 72863010 72863665 -169800688 - HsTC2a DNA Tc2 -1200 700 3 246 310 0 0 chr1 72864341 72864428 -169799925 - HAL1 LINE L1 -343 2164 2078 341 369 12 6 chr1 72864937 72865105 -169799248 - HAL1 LINE L1 -726 1781 1613 375 307 72 26 chr1 72865106 72865412 -169798941 - HAL1 LINE L1 -904 1603 1284 312 282 103 32 chr1 72865411 72865791 -169798562 - HAL1 LINE L1 -1160 1347 941 * 263 350 181 12 chr1 72866145 72866305 -169798048 + LTR67 LTR ERVL 15 201 -356 637 254 12 0 chr1 72866396 72866565 -169797788 + LTR67 LTR ERVL 363 533 -24 2458 153 28 5 chr1 72866810 72867209 -169797144 + MSTB LTR MaLR 1 408 -18 45145 38 1 2 chr1 72867739 72873903 -169790450 - L1PA2 LINE L1 0 6155 1 21389 127 14 88 chr1 72873904 72878111 -169786242 - L1P LINE L1 -2250 3896 1 2308 173 14 3 chr1 72878901 72879260 -169785093 + MLT1A1 LTR MaLR 1 363 -2 203 208 28 56 chr1 72879623 72879695 -169784658 - L2 LINE L2 -216 3097 3028 * 455 236 98 23 chr1 72879687 72879861 -169784492 - L2 LINE L2 -452 2862 2676 623 286 74 11 chr1 72879862 72880051 -169784302 - L2 LINE L2 -587 2727 2527 21 36 0 0 chr1 72880090 72880118 -169784235 + AT_rich Low_complexity Low_complexity 1 28 0 2183 130 0 0 chr1 72880353 72880652 -169783701 - AluSx SINE Alu -13 299 1 243 0 0 0 chr1 72881436 72881463 -169782890 + (T)n Simple_repeat Simple_repeat 1 27 0 42617 52 8 3 chr1 72881496 72887619 -169776734 - L1PA2 LINE L1 -1 6154 2 1730 109 22 0 chr1 72887617 72887884 -169776469 - L1MA3 LINE L1 -235 6070 5798 * 416 321 55 0 chr1 72887882 72887962 -169776391 + L1MC4a LINE L1 6372 6446 -1362 * 237 65 0 0 chr1 72887962 72887993 -169776360 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 416 321 55 0 chr1 72887993 72888077 -169776276 + L1MC4a LINE L1 6446 6545 -1263 641 258 98 18 chr1 72888096 72888321 -169776032 - L1MCc LINE L1 -5344 1079 837 241 375 0 0 chr1 72888404 72888484 -169775869 + L2 LINE L2 3186 3265 -7 2071 147 0 0 chr1 72890635 72890942 -169773411 + AluSx SINE Alu 1 307 -5 209 319 32 11 chr1 72891506 72891600 -169772753 - L2 LINE L2 -39 3233 3138 364 252 254 37 chr1 72892867 72893331 -169771022 + LTR50 LTR ERVL 67 631 -164 227 245 53 21 chr1 72893370 72893464 -169770889 + MLT2E LTR ERVL 525 621 -7 706 288 104 93 chr1 72893547 72894420 -169769933 + L2 LINE L2 1936 2818 -496 43573 35 23 1 chr1 72895212 72900867 -169763486 - L1P1 LINE L1 -371 5784 4 467 277 110 0 chr1 72900940 72901095 -169763258 - MIR3 SINE MIR -7 201 30 363 98 0 0 chr1 72902136 72902197 -169762156 + (CA)n Simple_repeat Simple_repeat 1 61 0 304 230 106 103 chr1 72902228 72902489 -169761864 - L1ME4a LINE L1 -212 5909 5643 2364 83 3 0 chr1 72902489 72902790 -169761563 - AluSc SINE Alu -7 302 1 2661 157 6 26 chr1 72904151 72904655 -169759698 - L1MC1 LINE L1 0 6333 5840 360 127 0 0 chr1 72904669 72904732 -169759621 - L1PB4 LINE L1 -2 6154 6092 4445 111 14 1 chr1 72904769 72904907 -169759446 - L1PB4 LINE L1 -226 5930 5795 324 102 0 0 chr1 72904907 72904956 -169759397 + (TG)n Simple_repeat Simple_repeat 1 49 0 4445 111 14 1 chr1 72904956 72905507 -169758846 - L1PB4 LINE L1 -361 5795 5233 674 166 34 2 chr1 72905524 72905660 -169758693 - L1MC1 LINE L1 -417 5825 5716 21 57 0 0 chr1 72905799 72905834 -169758519 + AT_rich Low_complexity Low_complexity 1 35 0 2507 84 0 0 chr1 72905838 72906149 -169758204 + AluSq SINE Alu 1 311 -2 1118 97 0 0 chr1 72907620 72907774 -169756579 + L1PA11 LINE L1 6021 6174 0 509 155 0 0 chr1 72907980 72908064 -169756289 + U13 snRNA snRNA 19 102 -2 1649 146 21 79 chr1 72908084 72908414 -169755939 + AluJb SINE Alu 1 311 -1 239 363 22 0 chr1 72908493 72908584 -169755769 - MIR3 SINE MIR -41 167 75 243 0 0 0 chr1 72908704 72908731 -169755622 + (T)n Simple_repeat Simple_repeat 1 27 0 2426 141 97 105 chr1 72909094 72909713 -169754640 - LTR18B LTR ERVL 0 614 1 1091 149 77 5 chr1 72910129 72910350 -169754003 + L1MB3 LINE L1 5944 6180 -3 188 318 15 15 chr1 72910567 72910633 -169753720 - L2 LINE L2 -221 3051 2986 540 286 34 45 chr1 72910646 72910705 -169753648 + MER5A DNA MER1_type 14 72 -117 980 25 0 0 chr1 72910705 72910824 -169753529 + L1PA4 LINE L1 6037 6155 0 540 286 34 45 chr1 72910824 72910942 -169753411 + MER5A DNA MER1_type 72 189 0 223 237 220 0 chr1 72910945 72911004 -169753349 + MIR SINE MIR 12 83 -179 745 259 162 4 chr1 72911487 72911746 -169752607 - LTR50 LTR ERVL -493 302 3 3375 70 5 0 chr1 72914225 72914668 -169749685 - L1PA7 LINE L1 -2 6152 5708 21 36 0 0 chr1 72915108 72915136 -169749217 + AT_rich Low_complexity Low_complexity 1 28 0 271 311 93 25 chr1 72915145 72915306 -169749047 - ERVL LTR ERVL -266 5498 5327 196 272 99 43 chr1 72915715 72915877 -169748476 - L2 LINE L2 -1615 1699 1529 398 239 31 23 chr1 72917024 72917154 -169747199 - L2 LINE L2 -20 3293 3163 211 316 100 16 chr1 72917237 72917427 -169746926 - L2 LINE L2 -339 2975 2770 619 313 83 35 chr1 72917434 72917722 -169746631 + L2 LINE L2 629 930 -2384 897 263 40 21 chr1 72918084 72918552 -169745801 - MLT1F1-int LTR MaLR -770 601 1 1181 203 45 100 chr1 72918552 72918951 -169745402 - MLT1F1 LTR MaLR 0 567 191 871 279 107 24 chr1 72918951 72919324 -169745029 + L2 LINE L2 1373 1776 -1538 2051 282 61 31 chr1 72919387 72920381 -169743972 + L1ME LINE L1 46 1069 -5327 333 242 97 8 chr1 72920459 72920583 -169743770 - L1MC4 LINE L1 -924 7118 6984 * 1977 189 39 120 chr1 72920555 72921291 -169743062 - L1MC4a LINE L1 -969 6839 6163 295 296 143 0 chr1 72921425 72921523 -169742830 + MER5A DNA MER1_type 54 165 -24 279 241 152 62 chr1 72921427 72921539 -169742814 - MER5A DNA MER1_type -45 144 23 * 231 318 59 0 chr1 72922620 72922705 -169741648 + MIR SINE MIR 109 198 -64 1197 185 160 7 chr1 72922856 72923137 -169741216 - MER58B DNA MER1_type -15 326 3 238 340 31 21 chr1 72923956 72924053 -169740300 - MIR SINE MIR -67 141 44 2103 279 23 25 chr1 72924723 72925419 -169738934 + L1ME LINE L1 2973 3669 -2546 7756 17 2 0 chr1 72925419 72926869 -169737484 + L1PA3 LINE L1 4705 6155 0 2103 279 23 25 chr1 72926869 72927112 -169737241 + L1ME LINE L1 3669 3911 -2304 634 245 141 8 chr1 72927103 72927333 -169737020 + L1ME LINE L1 5654 5881 -354 * 255 300 36 27 chr1 72928652 72928701 -169735652 + L1MC4 LINE L1 7782 7829 -213 2706 199 79 25 chr1 72928701 72929396 -169734957 + MER44D DNA MER2_type 1 605 0 255 300 36 27 chr1 72929396 72929456 -169734897 + L1MC4 LINE L1 7829 7892 -150 23 0 0 0 chr1 72929479 72929502 -169734851 + AT_rich Low_complexity Low_complexity 1 23 0 634 141 0 94 chr1 72929616 72929765 -169734588 + FLAM_A SINE Alu 8 142 0 1568 295 94 30 chr1 72930140 72931032 -169733321 + L1ME1 LINE L1 3 951 -5168 543 272 104 71 chr1 72931135 72931966 -169732387 + L1MEd LINE L1 598 1551 -939 1619 191 102 6 chr1 72932187 72932548 -169731805 - MSTD LTR MaLR 0 396 1 3052 136 2 6 chr1 72932961 72933440 -169730913 - L1PB3 LINE L1 -7 6147 5671 2098 206 20 0 chr1 72933443 72933890 -169730463 - L1 LINE L1 -1554 4592 4137 840 248 67 12 chr1 72933890 72934144 -169730209 + L1ME1 LINE L1 3569 3836 -2293 234 167 0 0 chr1 72934144 72934180 -169730173 + Alu SINE Alu 1 36 -264 2128 244 93 52 chr1 72934180 72935573 -169728780 + L1ME1 LINE L1 4893 6132 -17 545 112 0 0 chr1 72935581 72935670 -169728683 - L1MA3 LINE L1 0 6305 6217 286 231 33 11 chr1 72935972 72936063 -169728290 + L1ME LINE L1 5731 5823 -298 304 368 64 12 chr1 72936404 72936575 -169727778 + MIR SINE MIR 13 192 -70 329 120 0 0 chr1 72936595 72936645 -169727708 - L1P LINE L1 -1459 4687 4638 834 211 78 0 chr1 72936795 72937013 -169727340 - L1MC/D LINE L1 -540 5819 5585 * 11935 177 39 27 chr1 72937008 72937495 -169726858 - L1MA9 LINE L1 -6 7725 7245 2302 122 34 0 chr1 72937495 72937847 -169726506 - THE1B LTR MaLR 0 364 1 11935 177 39 27 chr1 72937847 72938713 -169725640 - L1MA9 LINE L1 -486 7245 6391 1253 40 17 11 chr1 72938713 72938890 -169725463 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 11935 177 39 27 chr1 72938890 72940842 -169723511 - L1MA9 LINE L1 -1340 6391 4368 1810 183 0 3 chr1 72940842 72940861 -169723492 - AluJb SINE Alu -1 311 293 777 69 35 7 chr1 72940861 72941005 -169723348 + (TA)n Simple_repeat Simple_repeat 1 148 0 1810 183 0 3 chr1 72941005 72941297 -169723056 - AluJb SINE Alu -19 293 1 11935 177 39 27 chr1 72941297 72941705 -169722648 - L1MA9 LINE L1 -3363 4368 3966 2749 280 32 26 chr1 72941810 72943344 -169721009 - L1MA9 LINE L1 -4067 3498 2017 280 351 54 5 chr1 72943608 72943793 -169720560 - L1M2a LINE L1 -5309 1859 1666 1868 286 88 23 chr1 72943906 72944240 -169720113 - L1MC/D LINE L1 -816 5330 5019 1171 263 78 67 chr1 72944240 72944826 -169719527 - MLT1E LTR MaLR 0 593 1 1868 286 88 23 chr1 72944826 72945714 -169718639 - L1MC/D LINE L1 -1127 5019 4028 1376 247 50 7 chr1 72945786 72946248 -169718105 + L1M4 LINE L1 2235 2716 -3430 2353 25 0 11 chr1 72946248 72946525 -169717828 + AluYa5 SINE Alu 1 274 -37 21 0 0 0 chr1 72946730 72946751 -169717602 + AT_rich Low_complexity Low_complexity 1 21 0 3968 221 30 34 chr1 72946838 72948630 -169715723 - L1ME1 LINE L1 -4 6231 4446 3226 234 78 41 chr1 72948641 72948796 -169715557 - L1ME1 LINE L1 -2748 3467 3319 2049 100 75 65 chr1 72948796 72949167 -169715186 + THE1C LTR MaLR 1 375 0 3226 234 78 41 chr1 72949167 72950983 -169713370 - L1ME1 LINE L1 -2896 3319 1452 304 313 44 31 chr1 72951625 72951785 -169712568 - L2 LINE L2 0 3313 3152 25 51 0 0 chr1 72951925 72951964 -169712389 + AT_rich Low_complexity Low_complexity 1 39 0 182 346 128 8 chr1 72952489 72952622 -169711731 - L2 LINE L2 -149 3164 3016 187 395 16 0 chr1 72952778 72952907 -169711446 - MIR3 SINE MIR -11 197 67 1601 169 44 7 chr1 72953324 72953620 -169710733 - AluJb SINE Alu -5 307 1 315 154 0 0 chr1 72953811 72953876 -169710477 + T-rich Low_complexity Low_complexity 1 65 0 17782 99 9 1 chr1 72953882 72957206 -169707147 - L1PA7 LINE L1 -13 6141 2761 525 238 67 12 chr1 72957356 72957520 -169706833 - L2 LINE L2 -1226 2088 1916 421 259 113 66 chr1 72957554 72957979 -169706374 - MER65A LTR ERV1 0 445 1 182 125 0 25 chr1 72959326 72959366 -169704987 + (TA)n Simple_repeat Simple_repeat 2 40 0 2349 170 40 2 chr1 72959494 72959918 -169704435 + MER31A LTR ERV1 5 444 -41 257 279 0 15 chr1 72959942 72960010 -169704343 - L2 LINE L2 -5 3308 3242 217 237 59 92 chr1 72960161 72960313 -169704040 - L2 LINE L2 -410 2904 2758 219 241 0 19 chr1 72960443 72960504 -169703849 + MIR SINE MIR 108 165 -43 255 159 0 23 chr1 72960645 72960689 -169703664 - AluJ/FLAM SINE Alu -211 91 49 899 150 0 0 chr1 72960694 72960827 -169703526 - FLAM_C SINE Alu 0 133 1 620 270 118 0 chr1 72960959 72961222 -169703131 - L1M4 LINE L1 -3161 2985 2692 29 70 0 0 chr1 72961730 72961787 -169702566 + AT_rich Low_complexity Low_complexity 1 57 0 469 233 132 39 chr1 72962157 72962286 -169702067 + MIR SINE MIR 7 147 -115 26 30 0 0 chr1 72962705 72962738 -169701615 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 72964404 72964425 -169699928 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 72965171 72965203 -169699150 + AT_rich Low_complexity Low_complexity 1 32 0 441 276 64 32 chr1 72965650 72965806 -169698547 + MIR SINE MIR 90 250 -12 198 0 0 0 chr1 72965945 72965967 -169698386 + (CA)n Simple_repeat Simple_repeat 1 22 0 1381 119 40 26 chr1 72966176 72966403 -169697950 - MER30 DNA MER1_type 0 230 1 23 0 0 0 chr1 72966442 72966465 -169697888 + AT_rich Low_complexity Low_complexity 1 23 0 830 130 0 41 chr1 72967011 72967157 -169697196 + MER1B DNA MER1_type 200 339 0 205 403 21 7 chr1 72968673 72968817 -169695536 + MIR SINE MIR 50 195 -67 1809 38 0 5 chr1 72970440 72970653 -169693700 - AluY SINE Alu -15 296 85 1254 152 5 0 chr1 72971287 72971491 -169692862 + MER3 DNA MER1_type 1 205 -4 2153 174 14 23 chr1 72971773 72972209 -169692144 - L1MC3 LINE L1 0 7785 7354 * 3278 154 40 34 chr1 72972207 72972864 -169691489 - L1MC3 LINE L1 -269 7516 6856 2369 185 51 20 chr1 72972880 72973045 -169691308 + L1MC3 LINE L1 5131 5289 -888 2790 16 0 0 chr1 72973045 72973356 -169690997 + AluYb8 SINE Alu 1 311 -7 2369 185 51 20 chr1 72973356 72973791 -169690562 + L1MC3 LINE L1 5289 5763 -414 * 3674 170 82 13 chr1 72973785 72974544 -169689809 + L1MC3 LINE L1 6040 6850 -935 22 0 0 0 chr1 72974967 72974989 -169689364 + AT_rich Low_complexity Low_complexity 1 22 0 232 207 11 11 chr1 72976109 72976196 -169688157 + (TA)n Simple_repeat Simple_repeat 1 87 0 228 276 68 101 chr1 72976850 72977226 -169687127 - L2 LINE L2 -189 3083 2689 33 0 0 0 chr1 72977487 72977520 -169686833 + AT_rich Low_complexity Low_complexity 1 33 0 1782 187 0 16 chr1 72977889 72978204 -169686149 - AluJb SINE Alu -2 310 1 287 43 64 0 chr1 72978254 72978301 -169686052 + (CATAT)n Simple_repeat Simple_repeat 3 52 0 302 253 11 11 chr1 72978419 72978506 -169685847 - L1ME LINE L1 -516 5605 5519 1667 112 68 10 chr1 72979712 72980008 -169684345 - LTR19A LTR ERV1 -173 313 1 221 240 80 0 chr1 72980549 72980599 -169683754 + MIR SINE MIR 206 259 -3 27 29 0 0 chr1 72981263 72981297 -169683056 + AT_rich Low_complexity Low_complexity 1 34 0 364 231 261 8 chr1 72982044 72982174 -169682179 + MIR SINE MIR 100 262 0 327 295 71 0 chr1 72982181 72982293 -169682060 - MIR SINE MIR -47 215 96 265 77 0 0 chr1 72982419 72982458 -169681895 + HSMAR1 DNA Mariner 1 39 -1248 602 221 91 39 chr1 72982465 72982673 -169681680 + MER112 DNA MER1_type 41 259 -1 191 270 40 54 chr1 72983038 72983112 -169681241 - L2 LINE L2 0 3272 3200 253 367 117 0 chr1 72983233 72983353 -169681000 - L2 LINE L2 0 3272 3139 374 164 0 0 chr1 72983393 72983460 -169680893 - L1MA4A LINE L1 -25 6278 6212 1735 140 32 7 chr1 72984792 72985077 -169679276 - AluJb SINE Alu -20 292 1 311 288 9 18 chr1 72985208 72985319 -169679034 - MIR SINE MIR -62 146 37 397 143 20 61 chr1 72985350 72985448 -169678905 + L1MB3 LINE L1 6087 6180 -3 1881 206 78 5 chr1 72985448 72985870 -169678483 + L1M4 LINE L1 5323 5775 -403 465 265 39 34 chr1 72986716 72986920 -169677433 - L1ME3A LINE L1 -291 5879 5675 22 35 0 0 chr1 72986944 72986973 -169677380 + AT_rich Low_complexity Low_complexity 1 29 0 367 284 120 67 chr1 72987029 72987237 -169677116 - HAL1 LINE L1 -64 2443 2225 250 231 77 51 chr1 72987386 72987503 -169676850 - HAL1b LINE L1 -475 873 754 22 35 0 0 chr1 72987645 72987674 -169676679 + AT_rich Low_complexity Low_complexity 1 29 0 194 191 0 32 chr1 72987759 72987822 -169676531 + CT-rich Low_complexity Low_complexity 4 64 0 499 267 161 10 chr1 72988019 72988311 -169676042 - HAL1 LINE L1 -695 1812 1477 2093 33 4 0 chr1 72988331 72988572 -169675781 + SVA Other Other 1145 1386 0 881 275 101 49 chr1 72988607 72988838 -169675515 - HAL1 LINE L1 -1104 1403 1185 189 0 0 0 chr1 72988838 72988859 -169675494 + (TG)n Simple_repeat Simple_repeat 2 22 0 881 275 101 49 chr1 72988859 72989260 -169675093 - HAL1 LINE L1 -1322 1185 738 342 307 80 55 chr1 72990667 72990830 -169673523 + MIR3 SINE MIR 19 185 -23 205 311 0 22 chr1 72990861 72990951 -169673402 + T-rich Low_complexity Low_complexity 1 88 0 254 290 265 6 chr1 72993989 72994151 -169670202 - MIR SINE MIR -48 214 11 415 337 112 24 chr1 72995953 72996158 -169668195 - MIR SINE MIR -36 226 4 950 141 0 7 chr1 72996213 72996355 -169667998 + AluJo SINE Alu 6 146 -166 1850 117 34 7 chr1 72998906 72999065 -169665288 - AluSx SINE Alu -13 299 127 207 0 0 0 chr1 72999065 72999088 -169665265 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1850 117 34 7 chr1 72999088 72999219 -169665134 - AluSx SINE Alu -185 127 1 416 282 39 13 chr1 73000442 73000631 -169663722 - L1MC4a LINE L1 -297 5824 5671 267 206 60 96 chr1 73000662 73000861 -169663492 - L1MC4a LINE L1 -2335 5473 5282 259 268 0 0 chr1 73000889 73000945 -169663408 - L1ME3 LINE L1 -21 6141 6086 * 896 246 54 41 chr1 73000938 73001263 -169663090 - L1ME3 LINE L1 -497 5665 5353 2632 90 58 21 chr1 73001348 73001780 -169662573 - LTR7 LTR ERV1 -2 448 1 2511 79 45 13 chr1 73001780 73002160 -169662193 - HERVH LTR ERV1 0 7713 7322 * 17569 91 13 43 chr1 73002158 73005001 -169659352 - HERVH LTR ERV1 -1894 5819 431 4365 96 19 18 chr1 73004996 73005742 -169658611 - HERVH LTR ERV1 -7064 649 1 * 2729 93 58 21 chr1 73005744 73006176 -169658177 - LTR7 LTR ERV1 -2 448 1 859 295 88 29 chr1 73006176 73006793 -169657560 - L1MEc LINE L1 -4608 1788 1136 4279 110 0 17 chr1 73006794 73006923 -169657430 - L1PA12 LINE L1 0 6168 6038 2030 157 30 14 chr1 73006923 73007292 -169657061 + THE1C LTR MaLR 1 375 0 4279 110 0 17 chr1 73007292 73007807 -169656546 - L1PA12 LINE L1 -130 6038 5535 372 359 24 15 chr1 73007817 73008023 -169656330 - L1ME3 LINE L1 -1240 4906 4699 1569 194 115 9 chr1 73008308 73008638 -169655715 - MLT1A1 LTR MaLR 0 365 1 858 149 54 6 chr1 73008747 73008987 -169655366 - MER34 LTR ERV1 0 542 236 * 1252 119 69 15 chr1 73008984 73009186 -169655167 + MSTA LTR MaLR 216 428 0 367 347 89 34 chr1 73009236 73009585 -169654768 + L1MEd LINE L1 406 773 -5346 13198 109 13 28 chr1 73009824 73012768 -169651585 + L1P3 LINE L1 4 2961 -3500 480 88 0 0 chr1 73112768 73112836 -169551517 + Alu SINE Alu 231 298 -11 314 216 17 138 chr1 73113174 73113290 -169551063 + MIR SINE MIR 30 131 -131 2202 95 25 0 chr1 73113401 73113686 -169550667 + AluSq SINE Alu 1 292 -21 472 173 12 0 chr1 73113963 73114044 -169550309 - AluS SINE Alu -229 83 2 2209 121 10 0 chr1 73114061 73114368 -169549985 - AluSg SINE Alu 0 310 1 1842 112 68 4 chr1 73114609 73114887 -169549466 - AluSp SINE Alu -17 296 1 1481 164 54 57 chr1 73115098 73115253 -169549100 - AluJo SINE Alu -15 297 143 216 67 0 0 chr1 73115253 73115283 -169549070 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 2145 102 4 0 chr1 73115283 73115557 -169548796 - AluSp SINE Alu -30 283 9 2344 91 10 0 chr1 73115565 73115863 -169548490 - AluSq SINE Alu -12 301 1 1481 164 54 57 chr1 73115863 73115995 -169548358 - AluJo SINE Alu -175 137 1 2011 121 45 10 chr1 73116018 73116141 -169548212 + AluSx SINE Alu 1 118 -194 2374 94 0 0 chr1 73116141 73116438 -169547915 + AluSg SINE Alu 1 297 -13 2011 121 45 10 chr1 73116438 73116603 -169547750 + AluSx SINE Alu 118 299 -13 633 102 4 31 chr1 73116608 73116853 -169547500 - AluJb SINE Alu -16 296 1 222 37 0 0 chr1 73118039 73118066 -169546287 + (TTTTC)n Simple_repeat Simple_repeat 1 27 0 1887 148 30 3 chr1 73118228 73118525 -169545828 + AluSx SINE Alu 1 305 -7 2468 76 0 0 chr1 73118576 73118877 -169545476 - AluY SINE Alu -10 301 1 1991 168 3 0 chr1 73119417 73119721 -169544632 - AluJo SINE Alu -7 305 1 2444 94 0 7 chr1 73119770 73120077 -169544276 + AluSc SINE Alu 1 305 -4 2198 129 3 0 chr1 73120125 73120436 -169543917 - AluSx SINE Alu 0 312 1 268 237 62 10 chr1 73121733 73121762 -169542591 - MER112 DNA MER1_type -90 170 144 2024 102 16 26 chr1 73121762 73122065 -169542288 + AluSc SINE Alu 1 300 -9 268 237 62 10 chr1 73122065 73122132 -169542221 - MER112 DNA MER1_type -116 144 69 25 31 0 0 chr1 73123037 73123069 -169541284 + GC_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1 73123096 73123118 -169541235 + GC_rich Low_complexity Low_complexity 1 22 0 226 171 0 73 chr1 73123192 73123274 -169541079 + (CGGG)n Simple_repeat Simple_repeat 3 78 0 37 23 0 0 chr1 73123274 73123318 -169541035 + GC_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr1 73123584 73123621 -169540732 + GC_rich Low_complexity Low_complexity 1 37 0 252 0 0 0 chr1 73123818 73123846 -169540507 + (CGG)n Simple_repeat Simple_repeat 3 30 0 391 287 126 18 chr1 73124721 73124888 -169539465 - MIR SINE MIR -18 244 60 2061 77 69 0 chr1 73125366 73125650 -169538703 - AluSg SINE Alu 0 303 2 325 274 51 81 chr1 73125735 73125932 -169538421 + L1ME4a LINE L1 5910 6100 -21 198 0 0 0 chr1 73126381 73126403 -169537950 + (T)n Simple_repeat Simple_repeat 1 22 0 640 173 0 0 chr1 73129314 73129424 -169534929 + AluJ SINE Alu 2 111 -201 189 0 0 0 chr1 73129425 73129446 -169534907 + (TC)n Simple_repeat Simple_repeat 2 22 0 2487 69 0 22 chr1 73129493 73129811 -169534542 - AluY SINE Alu 0 311 1 1084 163 12 0 chr1 73129815 73129987 -169534366 + AluJ SINE Alu 108 281 -31 255 220 0 0 chr1 73130214 73130264 -169534089 + Tigger5 DNA MER2_type 6 55 -2268 * 344 121 30 15 chr1 73130234 73130300 -169534053 + Tigger5 DNA MER2_type 2252 2318 -5 366 244 0 0 chr1 73130315 73130393 -169533960 - Tigger5 DNA MER2_type -2236 87 10 272 190 139 25 chr1 73130402 73130481 -169533872 + Tigger5 DNA MER2_type 2236 2323 0 2322 109 0 10 chr1 73130937 73131241 -169533112 - AluSx SINE Alu -11 301 1 190 180 20 40 chr1 73131669 73131719 -169532634 - MIR SINE MIR -71 137 89 2133 133 10 0 chr1 73131882 73132190 -169532163 - AluSx SINE Alu -1 311 1 207 0 0 0 chr1 73132192 73132215 -169532138 + (T)n Simple_repeat Simple_repeat 1 23 0 558 192 39 0 chr1 73132329 73132433 -169531920 + FLAM_C SINE Alu 2 109 -34 2318 112 3 10 chr1 73132498 73132811 -169531542 - AluSp SINE Alu -2 311 1 1282 122 0 22 chr1 73132811 73132975 -169531378 - AluSg/x SINE Alu -17 293 132 2220 107 13 7 chr1 73132975 73133273 -169531080 - AluSc SINE Alu -9 300 1 1282 122 0 22 chr1 73133273 73133289 -169531064 - AluSg/x SINE Alu -178 132 117 643 179 7 76 chr1 73133316 73133461 -169530892 - AluJb SINE Alu -21 291 157 2383 92 3 13 chr1 73134106 73134420 -169529933 - AluSq SINE Alu -2 311 1 235 326 69 49 chr1 73135745 73135889 -169528464 + L3 LINE CR1 1254 1400 -177 2158 122 14 0 chr1 73136869 73137163 -169527190 - AluSx SINE Alu -6 306 9 231 253 18 157 chr1 73137259 73137364 -169526989 + MIR SINE MIR 6 124 -138 2380 88 0 41 chr1 73137364 73137681 -169526672 - AluSx SINE Alu -8 304 1 2434 65 0 26 chr1 73137690 73137997 -169526356 - AluY SINE Alu -12 299 1 231 253 18 157 chr1 73137997 73138047 -169526306 + MIR SINE MIR 133 148 -114 346 301 45 8 chr1 73138151 73138284 -169526069 + MIR SINE MIR 125 262 0 2234 120 0 13 chr1 73139172 73139480 -169524873 - AluSx SINE Alu -8 304 1 2618 65 0 0 chr1 73140059 73140368 -169523985 - AluY SINE Alu -2 309 1 1711 200 7 3 chr1 73140368 73140663 -169523690 - AluJo SINE Alu -16 296 1 1696 186 7 10 chr1 73141278 73141573 -169522780 - AluJo SINE Alu -10 302 9 1924 167 0 0 chr1 73141588 73141887 -169522466 - AluJb SINE Alu -13 299 1 984 112 0 8 chr1 73141896 73142030 -169522323 - FLAM_C SINE Alu -10 133 1 1187 193 37 23 chr1 73142189 73142407 -169521946 + AluJo SINE Alu 1 221 -91 1854 169 7 0 chr1 73143137 73143445 -169520908 - AluJo SINE Alu -2 310 1 1983 158 0 10 chr1 73143861 73144171 -169520182 - AluSx SINE Alu -5 307 1 1480 152 55 0 chr1 73144360 73144670 -169519683 + L1MB3 LINE L1 5856 6182 -1 222 37 0 0 chr1 73145022 73145049 -169519304 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2051 113 0 51 chr1 73145051 73145344 -169519009 - AluSc SINE Alu -31 278 1 22 0 0 0 chr1 73145412 73145434 -169518919 + AT_rich Low_complexity Low_complexity 1 22 0 240 252 41 41 chr1 73146660 73146783 -169517570 - L2 LINE L2 -293 2979 2857 270 281 52 21 chr1 73147447 73147543 -169516810 - MER58A DNA MER1_type 0 136 38 342 0 0 0 chr1 73148335 73148373 -169515980 + (TG)n Simple_repeat Simple_repeat 2 39 0 328 282 21 84 chr1 73148740 73148768 -169515585 - L2 LINE L2 -2 3270 3242 2306 110 0 0 chr1 73148768 73149067 -169515286 + AluSg SINE Alu 1 299 -11 328 282 21 84 chr1 73149067 73149180 -169515173 - L2 LINE L2 -30 3242 3138 2046 159 3 0 chr1 73149326 73149628 -169514725 - AluSp SINE Alu -9 304 2 2311 112 3 3 chr1 73149644 73149956 -169514397 - AluSq SINE Alu -1 312 1 358 236 11 0 chr1 73150054 73150143 -169514210 - L2 LINE L2 -335 2937 2848 405 242 134 13 chr1 73150278 73150435 -169513918 - L2 LINE L2 -732 2582 2407 984 214 98 24 chr1 73150654 73150949 -169513404 - L1M4 LINE L1 -1353 4793 4477 1771 164 21 14 chr1 73151140 73151427 -169512926 - AluJb SINE Alu -23 289 1 293 254 48 16 chr1 73151462 73151588 -169512765 - L1M4 LINE L1 -1722 4424 4295 417 246 84 24 chr1 73152412 73152579 -169511774 + MIR SINE MIR 80 256 -6 2047 136 0 10 chr1 73152585 73152879 -169511474 - AluJb SINE Alu -21 291 1 2066 107 0 0 chr1 73152922 73153184 -169511169 + AluSq SINE Alu 1 262 -51 219 292 9 88 chr1 73154157 73154270 -169510083 - MIR3 SINE MIR -15 193 90 2074 117 4 4 chr1 73154483 73154764 -169509589 - AluJo SINE Alu -11 301 21 2432 181 47 15 chr1 73154782 73155314 -169509039 - L1MB7 LINE L1 -16 6168 5620 754 201 137 67 chr1 73358565 73358864 -169305489 + L1MC5 LINE L1 6909 7228 -733 645 12 0 0 chr1 73359124 73359204 -169305149 + AluYa5/8 SINE Alu 228 307 -4 27 0 0 0 chr1 73361028 73361055 -169303298 + AT_rich Low_complexity Low_complexity 1 27 0 225 320 40 40 chr1 73362424 73362549 -169301804 - MIR SINE MIR -47 215 91 856 152 121 0 chr1 73364270 73364435 -169299918 + MER2 DNA MER2_type 1 185 -160 6562 90 16 17 chr1 73364435 73366153 -169298200 + L1PA7 LINE L1 4441 6154 0 21 36 0 0 chr1 73366321 73366349 -169298004 + AT_rich Low_complexity Low_complexity 1 28 0 803 153 33 20 chr1 73366352 73366502 -169297851 + MER2 DNA MER2_type 174 325 -20 521 257 58 46 chr1 73366810 73367051 -169297302 - L2 LINE L2 0 3313 3070 381 43 0 0 chr1 73367168 73367215 -169297138 + (TG)n Simple_repeat Simple_repeat 1 47 0 602 338 52 29 chr1 73367292 73367769 -169296584 - L2 LINE L2 -1069 2245 1758 223 244 174 12 chr1 73368019 73368105 -169296248 + L2 LINE L2 3173 3272 0 730 309 42 44 chr1 73369472 73370067 -169294286 - L1M4 LINE L1 -2043 4103 3510 42144 38 23 2 chr1 73370068 73374378 -169289975 - L1PA2 LINE L1 0 6155 1675 2586 30 0 10 chr1 73374378 73374679 -169289674 + AluYa5 SINE Alu 1 298 -13 42144 38 23 2 chr1 73374679 73376391 -169287962 - L1PA2 LINE L1 -4480 1675 1 258 148 0 56 chr1 73376434 73376488 -169287865 + L1M4 LINE L1 3197 3247 -2899 26 0 0 0 chr1 73376959 73376985 -169287368 + AT_rich Low_complexity Low_complexity 1 26 0 240 111 0 0 chr1 73377548 73377584 -169286769 + (TA)n Simple_repeat Simple_repeat 1 36 0 6651 129 8 7 chr1 73379131 73379437 -169284916 - L1MA3 LINE L1 0 6305 6001 363 60 0 0 chr1 73379437 73379487 -169284866 + (CA)n Simple_repeat Simple_repeat 2 51 0 6651 129 8 7 chr1 73379487 73380255 -169284098 - L1MA3 LINE L1 -304 6001 5229 393 310 38 38 chr1 73380468 73380626 -169283727 - L2 LINE L2 -221 3051 2894 24 53 0 0 chr1 73381437 73381475 -169282878 + AT_rich Low_complexity Low_complexity 1 38 0 1562 150 79 0 chr1 73381671 73381924 -169282429 + AluSx SINE Alu 1 273 -39 231 36 0 0 chr1 73381924 73381952 -169282401 + (TC)n Simple_repeat Simple_repeat 2 29 0 284 380 63 0 chr1 73382105 73382247 -169282106 - L2 LINE L2 0 3272 3122 1151 296 45 36 chr1 73382717 73383184 -169281169 - MLT1H LTR MaLR -6 543 73 1106 226 12 105 chr1 73383837 73384245 -169280108 - MLT1A2 LTR MaLR -4 370 1 21 36 0 0 chr1 73384567 73384595 -169279758 + AT_rich Low_complexity Low_complexity 1 28 0 2034 91 57 14 chr1 73387983 73388280 -169276073 - AluSg SINE Alu 0 310 1 1173 251 146 41 chr1 73388378 73388768 -169275585 - MLT1F LTR MaLR -111 431 1 943 204 74 120 chr1 73388884 73389251 -169275102 + MER57A LTR ERV1 46 395 -8 2245 117 0 0 chr1 73389251 73389558 -169274795 - AluSx SINE Alu 0 312 6 28 29 0 0 chr1 73390487 73390522 -169273831 + AT_rich Low_complexity Low_complexity 1 35 0 241 330 38 19 chr1 73391453 73391559 -169272794 + MIR3 SINE MIR 86 193 -15 200 345 0 44 chr1 73392785 73392898 -169271455 - L2 LINE L2 -52 3261 3154 196 279 38 13 chr1 73392980 73393059 -169271294 - L2 LINE L2 -422 2892 2812 452 206 46 120 chr1 73393141 73393316 -169271037 - L2 LINE L2 0 3313 3152 242 304 8 96 chr1 73393556 73393681 -169270672 + MIR SINE MIR 76 189 -73 24 0 0 0 chr1 73394221 73394245 -169270108 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr1 73395224 73395251 -169269102 + (TG)n Simple_repeat Simple_repeat 2 28 0 227 216 103 31 chr1 73395848 73395945 -169268408 + MIR SINE MIR 143 246 -16 24 0 0 0 chr1 73396317 73396341 -169268012 + AT_rich Low_complexity Low_complexity 1 24 0 1617 228 85 85 chr1 73396466 73397006 -169267347 - MLT2B3 LTR ERVL 0 554 15 2669 150 16 26 chr1 73397014 73397514 -169266839 - HERVL-B3 LTR ERVL 0 5654 5160 1611 115 0 0 chr1 73397512 73397738 -169266615 - HERVL-B3 LTR ERVL -670 4984 4759 * 284 247 12 0 chr1 73398565 73398646 -169265707 - MER53 DNA DNA -106 83 2 1104 237 0 91 chr1 73398798 73398900 -169265453 - MLT1A1 LTR MaLR -45 320 210 3638 139 17 7 chr1 73398900 73399496 -169264857 - LTR43 LTR ERV1 0 602 1 1104 237 0 91 chr1 73399496 73399735 -169264618 - MLT1A1 LTR MaLR -155 210 10 495 256 23 47 chr1 73400148 73400320 -169264033 - MIR SINE MIR -49 213 46 2530 57 0 0 chr1 73400405 73400701 -169263652 + AluY SINE Alu 1 296 -15 313 260 26 0 chr1 73403048 73403125 -169261228 + MIR SINE MIR 122 200 -62 35 54 0 0 chr1 73404119 73404175 -169260178 + AT_rich Low_complexity Low_complexity 1 56 0 28 48 0 0 chr1 73404220 73404262 -169260091 + AT_rich Low_complexity Low_complexity 1 42 0 341 322 8 0 chr1 73404508 73404629 -169259724 - MER94 DNA DNA -9 125 4 692 43 11 0 chr1 73405216 73405308 -169259045 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 276 305 110 34 chr1 73405791 73405909 -169258444 - L2 LINE L2 0 3313 3187 319 230 14 0 chr1 73405933 73406007 -169258346 + MIR SINE MIR 151 225 -37 2348 37 0 4 chr1 73406321 73406594 -169257759 + AluY SINE Alu 1 272 -39 51 51 0 0 chr1 73406922 73407001 -169257352 + AT_rich Low_complexity Low_complexity 1 79 0 2306 90 7 0 chr1 73407244 73407543 -169256810 - AluY SINE Alu -10 301 1 318 202 202 32 chr1 73407935 73408059 -169256294 + LTR40a LTR ERVL 3 147 -372 432 326 11 34 chr1 73408187 73408365 -169255988 + LTR40a LTR ERVL 228 401 -118 297 324 225 6 chr1 73409102 73409284 -169255069 - MIR SINE MIR -11 251 30 23 0 0 0 chr1 73409648 73409671 -169254682 + AT_rich Low_complexity Low_complexity 1 23 0 2103 252 30 50 chr1 73410910 73411510 -169252843 - MER77 LTR ERV1 0 605 18 34 0 0 0 chr1 73411557 73411591 -169252762 + AT_rich Low_complexity Low_complexity 1 34 0 2179 134 0 10 chr1 73412729 73413043 -169251310 - AluSx SINE Alu -1 311 1 228 256 0 110 chr1 73413903 73413985 -169250368 + MIR3 SINE MIR 136 208 0 1522 216 97 79 chr1 73415769 73416277 -169248076 - MLT1E LTR MaLR -20 573 57 2746 181 62 9 chr1 73416278 73417100 -169247253 + L1MC/D LINE L1 985 1927 -4499 1923 231 10 20 chr1 73417098 73417700 -169246653 + L1MC/D LINE L1 2950 3545 -2881 * 1751 173 74 0 chr1 73417710 73418034 -169246319 + MER7A DNA MER2_type 1 346 0 414 273 43 27 chr1 73418135 73418322 -169246031 + L1MC/D LINE L1 4564 4753 -1673 272 115 0 49 chr1 73418310 73418371 -169245982 + L1MA7 LINE L1 6234 6291 0 * 1068 224 50 0 chr1 73418567 73418866 -169245487 + L1MC/D LINE L1 4736 5049 -1377 305 274 62 0 chr1 73418880 73418993 -169245360 + L1MC/D LINE L1 5171 5290 -1136 * 1363 153 83 0 chr1 73418992 73419246 -169245107 + L1MC/D LINE L1 5804 6078 -535 1814 219 21 58 chr1 73419248 73419681 -169244672 + MLT2B1 LTR ERVL 3 419 -101 205 167 0 0 chr1 73419700 73419736 -169244617 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 1029 277 37 52 chr1 73419740 73420202 -169244151 + ERVL-B1 LTR ERVL 3 457 -5307 318 241 12 0 chr1 73420303 73420386 -169243967 + L1MC5 LINE L1 6649 6732 -1229 1290 220 35 52 chr1 73420421 73420766 -169243587 + MLT2C1 LTR ERVL 6 344 -53 796 223 53 91 chr1 73420864 73421295 -169243058 - L1MC5 LINE L1 -453 7508 7094 2026 127 3 0 chr1 73422091 73422405 -169241948 - AluSq SINE Alu 0 315 1 1820 208 3 16 chr1 73422566 73422932 -169241421 - MLT1A1 LTR MaLR -4 361 1 232 262 19 68 chr1 73422934 73423037 -169241316 - L2 LINE L2 -199 3073 2976 457 132 0 22 chr1 73423705 73423796 -169240557 + (GGAA)n Simple_repeat Simple_repeat 2 90 0 27 49 0 0 chr1 73423931 73423972 -169240381 + AT_rich Low_complexity Low_complexity 1 41 0 189 196 0 0 chr1 73424190 73424236 -169240117 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 566 84 0 0 chr1 73425073 73425156 -169239197 + Alu SINE Alu 225 307 -2 817 310 74 22 chr1 73427097 73427461 -169236892 - LTR16C LTR ERVL -6 485 103 3180 160 55 20 chr1 73427593 73428188 -169236165 + LTR35 LTR ERV1 2 617 -1 206 271 17 17 chr1 73428333 73428392 -169235961 + L2 LINE L2 2613 2671 -643 294 91 15 30 chr1 73429832 73429898 -169234455 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 269 211 0 0 chr1 73430220 73430272 -169234081 - L2 LINE L2 -1 3312 3261 6500 163 25 7 chr1 73430283 73432507 -169231846 - L1PB1 LINE L1 -1 6150 3882 1418 224 41 24 chr1 73432934 73433273 -169231080 + MLT1A1 LTR MaLR 21 365 0 24 67 0 0 chr1 73433439 73433484 -169230869 + AT_rich Low_complexity Low_complexity 1 45 0 201 346 131 9 chr1 73434481 73434588 -169229765 + L2 LINE L2 2590 2709 -605 938 157 10 49 chr1 73434632 73434698 -169229655 - L1MA8 LINE L1 -27 6264 6197 2754 132 9 5 chr1 73434698 73435124 -169229229 - MSTA LTR MaLR 0 428 1 938 157 10 49 chr1 73435124 73435261 -169229092 - L1MA8 LINE L1 -94 6197 6069 1698 178 65 11 chr1 73436261 73436616 -169227737 - THE1C LTR MaLR 0 375 2 24597 141 46 21 chr1 73436827 73437018 -169227335 - L1PA7 LINE L1 -8 6651 6466 204 40 0 0 chr1 73437018 73437043 -169227310 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 24597 141 46 21 chr1 73437043 73442994 -169221359 - L1PA7 LINE L1 -193 6466 301 838 201 11 21 chr1 73442992 73443181 -169221172 - L1MC2 LINE L1 -204 6140 5954 * 558 293 75 19 chr1 73443335 73443547 -169220806 - L2 LINE L2 -199 3114 2891 659 216 102 92 chr1 73443551 73443963 -169220390 + L1MC5 LINE L1 6635 7050 -911 420 323 32 0 chr1 73443977 73444135 -169220218 - L2 LINE L2 -436 2878 2716 837 314 95 56 chr1 73444259 73444388 -169219965 - L2 LINE L2 -1971 1343 1220 7594 29 3 0 chr1 73444388 73445490 -169218863 - L1PA4 LINE L1 -3 6152 5050 837 314 95 56 chr1 73445490 73446036 -169218317 - L2 LINE L2 -2094 1220 642 3690 266 95 19 chr1 73446568 73447969 -169216384 - L1MEc LINE L1 -2281 3934 2640 1424 206 65 69 chr1 73447969 73448473 -169215880 - MLT1D LTR MaLR -3 502 1 3690 266 95 19 chr1 73448473 73449528 -169214825 - L1MEc LINE L1 -3575 2640 1315 1310 236 77 47 chr1 73449543 73450076 -169214277 - L1MEc LINE L1 -5214 1182 634 680 183 26 59 chr1 73450076 73450229 -169214124 - MSTD LTR MaLR -1 395 248 695 175 73 0 chr1 73450230 73450367 -169213986 - MSTD LTR MaLR -249 147 1 1638 274 40 46 chr1 73450373 73450998 -169213355 - L1MEc LINE L1 -5767 629 9 266 359 156 32 chr1 73451157 73451592 -169212761 + L2 LINE L2 375 863 -2451 243 0 0 0 chr1 73451636 73451663 -169212690 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 314 383 53 32 chr1 73451666 73452099 -169212254 + L2 LINE L2 978 1419 -1895 5943 115 44 3 chr1 73452514 73453927 -169210426 - L1PA14 LINE L1 -1 6160 4718 306 324 270 5 chr1 73454120 73454324 -169210029 + MIR SINE MIR 4 261 -1 323 335 54 79 chr1 73454369 73454874 -169209479 + L2 LINE L2 2565 3054 -218 2740 146 5 0 chr1 73454900 73455332 -169209021 + MER57B LTR ERV1 1 434 0 4280 141 20 3 chr1 73455332 73455993 -169208360 + MER57B-int LTR ERV1 1 672 -6865 3064 141 71 11 chr1 73455990 73456689 -169207664 + MER57B-int LTR ERV1 288 1136 -4810 * 2895 158 65 24 chr1 73456679 73457914 -169206439 + MER57B-int LTR ERV1 1371 4170 -2230 * 1848 51 4 0 chr1 73457914 73458150 -169206203 - L1PA3 LINE L1 -2421 3725 3489 13654 34 2 1 chr1 73458150 73460543 -169203810 + L1PA3 LINE L1 3744 6137 -18 980 58 0 0 chr1 73460543 73460583 -169203770 + L1P LINE L1 3744 6176 -743 4109 159 68 63 chr1 73460587 73461614 -169202739 + MER57B-int LTR ERV1 3010 4041 -1905 * 12133 120 34 1 chr1 73461605 73463391 -169200962 + MER57B-int LTR ERV1 5307 7151 -386 677 171 24 8 chr1 73463391 73463514 -169200839 + LTR54B LTR ERV1 5 129 -369 998 128 12 1 chr1 73463514 73463748 -169200605 + MER57B-int LTR ERV1 7274 7537 0 2795 139 9 5 chr1 73463748 73464173 -169200180 + MER57B LTR ERV1 1 427 -7 368 312 0 9 chr1 73464274 73464383 -169199970 + L2 LINE L2 3201 3308 -5 16442 172 39 7 chr1 73464395 73467313 -169197040 + L1M1 LINE L1 16 3027 -4538 2170 163 41 31 chr1 73467313 73467859 -169196494 - MLT2A2 LTR ERVL 0 554 1 5278 230 32 46 chr1 73467860 73470272 -169194081 + L1M1 LINE L1 3024 5263 -2302 * 5836 138 6 14 chr1 73470259 73471213 -169193140 + L1MA3 LINE L1 5357 6303 -2 229 357 123 6 chr1 73471348 73471519 -169192834 - MIR SINE MIR -5 257 67 306 315 112 28 chr1 73471581 73471724 -169192629 - MIR3 SINE MIR -39 169 15 484 335 16 41 chr1 73472344 73472586 -169191767 - MIR SINE MIR -12 250 15 1961 112 0 8 chr1 73472992 73473259 -169191094 - AluSq SINE Alu -46 267 3 31 44 0 0 chr1 73473473 73473518 -169190835 + AT_rich Low_complexity Low_complexity 1 45 0 192 371 80 28 chr1 73473633 73473846 -169190507 - L2 LINE L2 -652 2662 2439 2333 83 0 3 chr1 73474708 73475008 -169189345 + AluY SINE Alu 1 299 -12 394 384 14 18 chr1 73475271 73475490 -169188863 - MLT1K LTR MaLR -346 242 25 423 291 72 46 chr1 73475905 73476211 -169188142 + L1ME4a LINE L1 5705 6018 -103 6005 155 24 11 chr1 73476277 73477835 -169186518 + L1MA3 LINE L1 4727 6305 0 302 322 0 0 chr1 73477986 73478076 -169186277 + L1MC4 LINE L1 6614 6703 -1339 489 110 0 0 chr1 73478079 73478152 -169186201 + (TG)n Simple_repeat Simple_repeat 2 74 0 321 221 63 47 chr1 73479452 73479579 -169184774 + MIR SINE MIR 85 213 -49 3422 118 24 4 chr1 73481520 73482021 -169182332 + MER9 LTR ERVK 1 511 0 1549 209 68 18 chr1 73482257 73482640 -169181713 - LTR52 LTR ERVL -9 412 11 22 56 0 0 chr1 73483547 73483583 -169180770 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr1 73483612 73483640 -169180713 + AT_rich Low_complexity Low_complexity 1 28 0 1168 126 26 25 chr1 73483640 73483915 -169180438 + THE1B LTR MaLR 1 364 0 1669 133 74 0 chr1 73484712 73484983 -169179370 + LTR57 LTR ERVL 1 291 -120 477 328 58 0 chr1 73485239 73485413 -169178940 + MIR SINE MIR 15 198 -64 23 0 0 0 chr1 73487494 73487517 -169176836 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 73488511 73488540 -169175813 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 73488939 73488962 -169175391 + AT_rich Low_complexity Low_complexity 1 23 0 222 370 54 0 chr1 73488978 73489070 -169175283 - MIR SINE MIR -117 145 49 202 333 43 43 chr1 73489324 73489441 -169174912 + L2 LINE L2 2917 3033 -239 239 379 35 28 chr1 73489718 73489863 -169174490 + MIR SINE MIR 1 146 -116 446 241 0 0 chr1 73489868 73489976 -169174377 + FLAM_A SINE Alu 35 142 0 215 245 0 0 chr1 73490122 73490175 -169174178 + (TTA)n Simple_repeat Simple_repeat 2 54 0 22 35 0 0 chr1 73491421 73491450 -169172903 + AT_rich Low_complexity Low_complexity 1 29 0 2354 88 3 0 chr1 73491633 73491941 -169172412 + AluY SINE Alu 1 309 -2 1223 169 31 0 chr1 73492189 73492414 -169171939 + Tigger1 DNA MER2_type 2187 2418 0 591 291 228 17 chr1 73492894 73493307 -169171046 + MLT1H1 LTR MaLR 5 544 -5 353 301 37 73 chr1 73493384 73493520 -169170833 - L2 LINE L2 0 3272 3142 1637 196 4 14 chr1 73494491 73494801 -169169552 + MLT1A1 LTR MaLR 57 465 -2 1422 218 50 69 chr1 73496359 73496836 -169167517 - MER31A LTR ERV1 0 485 18 1365 186 83 0 chr1 73496843 73497096 -169167257 + AluJo SINE Alu 15 288 -24 408 287 100 100 chr1 73498292 73498879 -169165474 + L2 LINE L2 2710 3313 0 224 368 71 7 chr1 73499479 73499634 -169164719 - MIR3 SINE MIR -21 187 23 1971 107 3 33 chr1 73499736 73500035 -169164318 + AluSc SINE Alu 16 305 -4 23 0 0 0 chr1 73500215 73500238 -169164115 + AT_rich Low_complexity Low_complexity 1 23 0 36 40 0 0 chr1 73501216 73501266 -169163087 + AT_rich Low_complexity Low_complexity 1 50 0 22 94 0 0 chr1 73501481 73501545 -169162808 + AT_rich Low_complexity Low_complexity 1 64 0 1573 248 59 27 chr1 73501721 73502161 -169162192 - LTR40b LTR ERVL -8 454 1 818 265 73 5 chr1 73502161 73502481 -169161872 - HERVL40 LTR ERVL 0 5530 2792 325 380 39 14 chr1 73502390 73502669 -169161684 - MER31A-int LTR ERV1 -319 6482 6197 * 1759 229 104 53 chr1 73503283 73503851 -169160502 - MER77 LTR ERV1 0 605 9 1771 316 44 15 chr1 73503944 73504602 -169159751 - HERVL40 LTR ERVL -870 4660 3984 1465 287 42 11 chr1 73504601 73505391 -169158962 - HERVL40 LTR ERVL -1943 3587 2728 * 450 289 96 0 chr1 73505502 73505668 -169158685 - HERVL40 LTR ERVL -2814 2716 2535 1110 311 58 27 chr1 73505680 73506289 -169158064 - HERVL40 LTR ERVL -3919 1611 938 678 258 33 0 chr1 73506584 73506766 -169157587 - L1M4 LINE L1 -1995 4649 4462 380 115 0 0 chr1 73506766 73506818 -169157535 - tRNA-Arg-CGC tRNA tRNA -24 52 1 243 220 110 0 chr1 73506829 73506920 -169157433 - L1M4 LINE L1 -2175 4469 4369 294 260 10 96 chr1 73506928 73507032 -169157321 + MER58A DNA MER1_type 4 98 -9 278 246 0 15 chr1 73507060 73507125 -169157228 + MER58A DNA MER1_type 155 218 -6 326 326 58 7 chr1 73507131 73507269 -169157084 - L1M4 LINE L1 -2268 4376 4232 1207 203 16 42 chr1 73507269 73507579 -169156774 - AluJo SINE Alu 0 312 11 1456 266 42 19 chr1 73507579 73508217 -169156136 - L1M4 LINE L1 -2395 4249 3597 1127 284 97 50 chr1 73508373 73509268 -169155085 - L1M4 LINE L1 -4554 2092 1166 238 297 127 8 chr1 73509616 73509734 -169154619 - L1M4 LINE L1 -5654 888 757 22 35 0 0 chr1 73510654 73510683 -169153670 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 73510912 73510940 -169153413 + AT_rich Low_complexity Low_complexity 1 28 0 234 370 37 9 chr1 73511058 73511166 -169153187 + MIR SINE MIR 78 188 -74 1967 123 10 3 chr1 73511170 73511463 -169152890 + AluSq SINE Alu 1 295 -18 892 213 112 40 chr1 73511863 73512212 -169152141 + MSTC LTR MaLR 1 426 -2 1961 278 142 25 chr1 73512212 73513153 -169151200 + MSTD-int LTR MaLR 3 1053 -598 5179 141 10 40 chr1 73513155 73514238 -169150115 + L1PB3 LINE L1 5104 6153 -1 2376 219 125 9 chr1 73514256 73514830 -169149523 + MSTD-int LTR MaLR 1095 1735 0 989 224 126 44 chr1 73514830 73515196 -169149157 + MSTD LTR MaLR 1 396 0 2214 66 0 69 chr1 73516559 73516892 -169147461 - AluY SINE Alu -1 310 1 23 86 0 0 chr1 73517288 73517346 -169147007 + AT_rich Low_complexity Low_complexity 1 58 0 257 323 48 83 chr1 73517476 73517705 -169146648 + MIR SINE MIR 29 249 -13 366 23 0 0 chr1 73517962 73518005 -169146348 + (TG)n Simple_repeat Simple_repeat 2 44 0 4076 182 26 29 chr1 73518116 73518974 -169145379 - L1MD1 LINE L1 -2 6240 5386 753 226 123 15 chr1 73519409 73519604 -169144749 + MLT2B3 LTR ERVL 24 239 -315 * 883 179 16 38 chr1 73519590 73519722 -169144631 + MLT2B3 LTR ERVL 375 503 -51 414 0 0 0 chr1 73519722 73519768 -169144585 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 883 179 16 38 chr1 73519768 73519819 -169144534 + MLT2B3 LTR ERVL 503 554 0 13090 183 65 12 chr1 73520237 73522818 -169141535 - Tigger2 DNA MER2_type 0 2718 1 1959 102 7 34 chr1 73523111 73523405 -169140948 + AluSc SINE Alu 7 292 -17 287 246 40 95 chr1 73524390 73524516 -169139837 + MLT1J LTR MaLR 76 194 -317 186 43 0 0 chr1 73525698 73525721 -169138632 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1758 226 91 56 chr1 73528458 73529061 -169135292 - MLT1E3 LTR MaLR 0 624 1 213 325 157 12 chr1 73529465 73529548 -169134805 + L2 LINE L2 3192 3286 -27 191 276 46 81 chr1 73531756 73531843 -169132510 + L2 LINE L2 3162 3245 -27 399 360 35 15 chr1 73533925 73534125 -169130228 - L3 LINE CR1 -19 1558 1355 197 322 51 0 chr1 73534256 73534315 -169130038 - L3 LINE CR1 -505 1072 1011 1446 271 76 0 chr1 73534375 73534807 -169129546 - LTR33 LTR ERVL -24 497 33 198 0 0 0 chr1 73535114 73535136 -169129217 + (CA)n Simple_repeat Simple_repeat 2 23 0 2498 106 0 6 chr1 73535765 73536122 -169128231 + THE1A LTR MaLR 1 355 0 327 25 0 0 chr1 73536606 73536646 -169127707 + (CA)n Simple_repeat Simple_repeat 1 40 0 272 352 0 7 chr1 73536646 73536791 -169127562 - L1ME3A LINE L1 -227 5943 5800 1247 302 52 42 chr1 73537310 73537923 -169126430 + MER69 DNA AcHobo 67 685 -1841 2296 234 116 13 chr1 73537960 73538755 -169125598 + MER69 DNA AcHobo 1650 2526 0 282 165 38 0 chr1 73538797 73538876 -169125477 + (TA)n Simple_repeat Simple_repeat 1 82 0 420 354 56 6 chr1 73539836 73539997 -169124356 + MIR SINE MIR 20 188 -74 357 350 81 15 chr1 73540584 73540781 -169123572 - MIR SINE MIR -21 241 32 21 71 0 0 chr1 73541231 73541273 -169123080 + AT_rich Low_complexity Low_complexity 1 42 0 256 231 51 0 chr1 73542203 73542281 -169122072 + L1ME1 LINE L1 1472 1553 -5306 621 353 74 25 chr1 73542332 73542816 -169121537 + L1M4b LINE L1 609 1116 -5772 1072 288 30 37 chr1 73543154 73543619 -169120734 + L1M4b LINE L1 1701 2162 -4726 10153 197 52 13 chr1 73543764 73544759 -169119594 - L1PA13 LINE L1 -4167 2630 1675 672 13 0 0 chr1 73544759 73544836 -169119517 + (TA)n Simple_repeat Simple_repeat 2 78 0 10153 197 52 13 chr1 73544836 73546163 -169118190 - L1PA13 LINE L1 -5122 1675 202 3918 178 21 111 chr1 73546169 73546235 -169118118 + L1MA4 LINE L1 4214 4284 -2016 1889 104 11 7 chr1 73546235 73546549 -169117804 + AluSg SINE Alu 1 315 0 3918 178 21 111 chr1 73546549 73548069 -169116284 + L1MA4 LINE L1 4284 5654 -646 280 299 0 0 chr1 73548073 73548150 -169116203 + (TA)n Simple_repeat Simple_repeat 2 78 0 3328 164 25 8 chr1 73548164 73548799 -169115554 + L1MA4 LINE L1 5643 6288 -12 359 316 70 59 chr1 73548808 73549599 -169114754 + L1ME1 LINE L1 1622 2420 -4539 229 265 48 0 chr1 73549636 73549719 -169114634 + L1MC4 LINE L1 6614 6700 -1342 251 146 18 0 chr1 73549723 73549778 -169114575 + (TA)n Simple_repeat Simple_repeat 1 56 0 1156 267 90 48 chr1 73549832 73550578 -169113775 + L1ME1 LINE L1 4233 5009 -1948 1135 203 46 20 chr1 73550619 73550964 -169113389 + L1ME1 LINE L1 5112 5465 -1492 26 50 0 0 chr1 73550982 73551022 -169113331 + AT_rich Low_complexity Low_complexity 1 40 0 2762 247 53 11 chr1 73551088 73552041 -169112312 + L1ME1 LINE L1 5986 6977 0 1734 278 110 18 chr1 73552090 73553175 -169111178 - L1M4 LINE L1 -2098 4048 2864 556 208 0 0 chr1 73553176 73553282 -169111071 + U6 snRNA snRNA 2 107 0 5621 228 67 46 chr1 73553314 73555054 -169109299 + L1P LINE L1 1266 3041 -3105 228 386 45 22 chr1 73655891 73656114 -169008239 + MIR SINE MIR 34 261 -1 2185 144 11 19 chr1 73657734 73658101 -169006252 - THE1B LTR MaLR 0 364 1 8651 132 11 16 chr1 73658101 73659782 -169004571 - THE1B-int LTR MaLR 0 1580 3 1039 160 11 27 chr1 73659784 73659972 -169004381 - THE1B LTR MaLR 0 364 180 236 390 0 29 chr1 73660289 73660394 -169003959 - L2 LINE L2 -52 3261 3160 24 0 0 0 chr1 73660411 73660435 -169003918 + AT_rich Low_complexity Low_complexity 1 24 0 628 336 18 42 chr1 73660454 73660737 -169003616 - L2 LINE L2 -150 3163 2888 486 281 129 17 chr1 73660768 73660946 -169003407 - L2 LINE L2 -532 2782 2585 229 309 0 15 chr1 73661015 73661083 -169003270 + L2 LINE L2 3246 3312 -1 383 271 57 79 chr1 73661773 73661950 -169002403 + MER5A DNA MER1_type 17 189 0 351 44 0 0 chr1 73664715 73664760 -168999593 + (TG)n Simple_repeat Simple_repeat 1 45 0 500 307 80 19 chr1 73665365 73665577 -168998776 - MLT1G LTR MaLR -356 234 10 744 250 37 5 chr1 73665925 73666113 -168998240 - MIR SINE MIR -43 219 26 207 191 0 0 chr1 73666343 73666385 -168997968 + (TATG)n Simple_repeat Simple_repeat 3 44 0 988 309 28 58 chr1 73666386 73666447 -168997906 - LTR16A LTR ERVL -6 444 383 2138 129 0 0 chr1 73666447 73666757 -168997596 + AluSq SINE Alu 1 310 -3 988 309 28 58 chr1 73666757 73667122 -168997231 - LTR16A LTR ERVL -67 383 31 21 0 0 0 chr1 73667429 73667450 -168996903 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 73668027 73668048 -168996305 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1 73668390 73668417 -168995936 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr1 73668508 73668537 -168995816 + AT_rich Low_complexity Low_complexity 1 29 0 550 214 9 0 chr1 73668782 73668894 -168995459 - L1MD2 LINE L1 -347 6012 5900 189 107 0 0 chr1 73668894 73668922 -168995431 + (A)n Simple_repeat Simple_repeat 1 28 0 8424 78 3 1 chr1 73670208 73671275 -168993078 - HERVL LTR ERVL -2612 3042 1974 10311 86 5 1 chr1 73673129 73674549 -168989804 + L1P LINE L1 3467 4891 -1255 1504 147 0 0 chr1 73674649 73674887 -168989466 - L1PBa LINE L1 -5781 1082 845 26 0 0 0 chr1 73675130 73675156 -168989197 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 73675671 73675692 -168988661 + AT_rich Low_complexity Low_complexity 1 21 0 1127 207 0 10 chr1 73675697 73675905 -168988448 - MLT1C LTR MaLR 0 467 262 21 0 0 0 chr1 73676596 73676617 -168987736 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr1 73676855 73676907 -168987446 + AT_rich Low_complexity Low_complexity 1 52 0 21 95 0 0 chr1 73677126 73677189 -168987164 + AT_rich Low_complexity Low_complexity 1 63 0 1977 133 39 33 chr1 73677309 73677671 -168986682 - THE1B LTR MaLR 0 364 1 225 347 171 5 chr1 73677902 73678095 -168986258 + L2 LINE L2 2599 2823 -491 1588 203 55 19 chr1 73678126 73678490 -168985863 - MLT1B LTR MaLR 0 390 14 367 250 11 11 chr1 73678522 73678610 -168985743 + L2 LINE L2 3225 3312 -1 1682 155 44 0 chr1 73678624 73678924 -168985429 + AluSx SINE Alu 1 312 0 1630 76 14 5 chr1 73679487 73679698 -168984655 + AluY SINE Alu 1 213 -98 3362 229 79 70 chr1 73679799 73681356 -168982997 - L1M4 LINE L1 -753 5787 4217 1973 228 70 19 chr1 73681360 73682253 -168982100 - L1MDa LINE L1 -3563 2977 2052 2610 229 71 35 chr1 73682278 73682566 -168981787 - L1MDa LINE L1 -4598 1942 1666 2269 89 3 13 chr1 73682566 73682882 -168981471 - AluSp SINE Alu 0 313 1 2610 229 71 35 chr1 73682882 73683552 -168980801 - L1MDa LINE L1 -4874 1666 950 1599 235 49 3 chr1 73683533 73683903 -168980450 - L1MDa LINE L1 -6123 417 31 * 27 29 0 0 chr1 73683918 73683952 -168980401 + AT_rich Low_complexity Low_complexity 1 34 0 1372 293 49 23 chr1 73684586 73685057 -168979296 + MLT1E2 LTR MaLR 137 619 -7 305 346 56 0 chr1 73685905 73686012 -168978341 - L2 LINE L2 -597 2717 2605 362 342 154 0 chr1 73686026 73686175 -168978178 + MER5A DNA MER1_type 17 188 -1 415 326 22 17 chr1 73686177 73686355 -168977998 - L2 LINE L2 -703 2611 2433 336 107 0 0 chr1 73686454 73686487 -168977866 + (TA)n Simple_repeat Simple_repeat 2 34 -23 189 0 0 0 chr1 73686487 73686508 -168977845 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 330 26 0 0 chr1 73686507 73686546 -168977807 + (TG)n Simple_repeat Simple_repeat 2 40 0 336 107 0 0 chr1 73686508 73686568 -168977785 + (TA)n Simple_repeat Simple_repeat 33 57 0 2066 114 7 7 chr1 73686569 73686858 -168977495 - AluSq SINE Alu -24 289 1 25 0 0 68 chr1 73687787 73687831 -168976522 + AT_rich Low_complexity Low_complexity 1 41 0 479 331 19 0 chr1 73687848 73688005 -168976348 - MIR SINE MIR -96 166 7 292 208 38 0 chr1 73688247 73688300 -168976053 + MER66A LTR ERV1 284 338 -140 4421 63 5 2 chr1 73691769 73692352 -168972001 - L1PA8 LINE L1 -1 6171 5587 1870 261 107 48 chr1 73692664 73693368 -168970985 - L1ME1 LINE L1 -5 6161 5500 1579 193 7 23 chr1 73693368 73693674 -168970679 + AluJo SINE Alu 1 301 -11 1870 261 107 48 chr1 73693674 73694538 -168969815 - L1ME1 LINE L1 -666 5500 4440 971 196 37 134 chr1 73694538 73694942 -168969411 - MLT1A1 LTR MaLR 0 365 1 1870 261 107 48 chr1 73694942 73695388 -168968965 - L1ME1 LINE L1 -1726 4440 4022 3209 282 46 53 chr1 73695391 73697170 -168967183 + L1M4c LINE L1 413 1787 -4516 2080 296 42 11 chr1 73697249 73698306 -168966047 + L1M4c LINE L1 2031 3124 -3258 417 292 175 12 chr1 73699208 73699379 -168964974 - MIR SINE MIR -61 201 3 258 381 128 34 chr1 73700776 73701104 -168963249 + L2 LINE L2 2911 3269 -3 30 45 0 0 chr1 73705103 73705147 -168959206 + AT_rich Low_complexity Low_complexity 1 44 0 28 29 0 0 chr1 73705203 73705238 -168959115 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 73705499 73705528 -168958825 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 73705671 73705692 -168958661 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 73705811 73705833 -168958520 + AT_rich Low_complexity Low_complexity 1 22 0 1253 174 22 0 chr1 73707581 73707811 -168956542 + MER46A DNA MER2_type 2 236 0 1695 162 28 3 chr1 73707943 73708233 -168956120 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr1 73708847 73708869 -168955484 + AT_rich Low_complexity Low_complexity 1 22 0 613 269 100 87 chr1 73709531 73709989 -168954364 + MLT1J LTR MaLR 4 467 -44 983 200 0 5 chr1 73710562 73710762 -168953591 - L1MD3 LINE L1 -68 7927 7729 324 64 0 0 chr1 73710779 73710826 -168953527 + (GA)n Simple_repeat Simple_repeat 2 48 0 635 268 36 0 chr1 73710927 73711095 -168953258 - MIR SINE MIR -32 230 57 320 321 92 8 chr1 73711159 73711290 -168953063 + MIR3 SINE MIR 38 179 -29 4846 162 48 0 chr1 73711411 73712304 -168952049 + L1PA16 LINE L1 5232 6166 0 1221 280 33 83 chr1 73712637 73712941 -168951412 - HsTC2c DNA Tc2 -1258 640 322 263 48 0 24 chr1 73712941 73712983 -168951370 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 1221 280 33 83 chr1 73712983 73713352 -168951001 - HsTC2c DNA Tc2 -1576 322 1 3982 193 20 34 chr1 73713528 73714332 -168950021 + Tigger1 DNA MER2_type 1 793 -1625 * 8250 144 18 18 chr1 73714326 73715740 -168948613 + Tigger1 DNA MER2_type 1003 2417 -1 1398 161 16 96 chr1 73717278 73717601 -168946752 + AluJb SINE Alu 3 299 -13 244 370 80 36 chr1 73717602 73717740 -168946613 - L2 LINE L2 -13 3259 3116 222 284 68 0 chr1 73721402 73721476 -168942877 + MIR SINE MIR 116 194 -68 2310 222 139 19 chr1 73721734 73722578 -168941775 + Charlie1 DNA MER1_type 3 744 -2017 805 148 0 0 chr1 73722578 73722713 -168941640 + L1MA10 LINE L1 6199 6333 -1 2310 222 139 19 chr1 73722713 73722762 -168941591 + Charlie1 DNA MER1_type 744 2354 -407 1003 196 127 28 chr1 73723096 73723458 -168940895 + Charlie1 DNA MER1_type 2362 2759 -2 12857 99 15 5 chr1 73725296 73728007 -168936346 + L1PA8 LINE L1 3418 6149 -23 522 103 0 0 chr1 73728013 73728091 -168936262 + (TA)n Simple_repeat Simple_repeat 1 78 0 23 86 0 0 chr1 73728099 73728157 -168936196 + AT_rich Low_complexity Low_complexity 1 58 0 256 214 131 24 chr1 73728379 73728463 -168935890 + MIR SINE MIR 170 262 0 28 61 0 0 chr1 73728563 73728612 -168935741 + AT_rich Low_complexity Low_complexity 1 49 0 26 30 0 0 chr1 73729616 73729649 -168934704 + AT_rich Low_complexity Low_complexity 1 33 0 212 139 0 23 chr1 73732096 73732139 -168932214 + (TCCCC)n Simple_repeat Simple_repeat 4 45 0 21 0 0 0 chr1 73732395 73732416 -168931937 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 73732619 73732641 -168931712 + AT_rich Low_complexity Low_complexity 1 22 0 1097 263 105 33 chr1 73732651 73733080 -168931273 - MLT1C LTR MaLR 0 467 8 23 68 0 0 chr1 73733125 73733169 -168931184 + AT_rich Low_complexity Low_complexity 1 44 0 306 234 16 0 chr1 73733514 73733578 -168930775 + MLT1G LTR MaLR 1 65 -525 2143 240 114 28 chr1 73733629 73734307 -168930046 + L1M3e LINE L1 1348 2083 -4947 662 289 109 23 chr1 73734311 73734626 -168929727 + MLT1G LTR MaLR 53 384 -206 609 237 82 26 chr1 73734626 73734820 -168929533 + MER3 DNA MER1_type 2 206 -3 453 281 146 5 chr1 73734822 73735007 -168929346 + MLT1G LTR MaLR 379 589 -1 232 246 18 0 chr1 73736132 73736189 -168928164 - L2 LINE L2 -328 2985 2928 356 235 35 129 chr1 73736200 73736370 -168927983 - MIR SINE MIR -56 206 53 22 0 0 0 chr1 73736591 73736613 -168927740 + AT_rich Low_complexity Low_complexity 1 22 0 28 99 0 0 chr1 73737082 73737173 -168927180 + AT_rich Low_complexity Low_complexity 1 91 0 23 0 0 0 chr1 73737429 73737452 -168926901 + AT_rich Low_complexity Low_complexity 1 23 0 450 337 107 0 chr1 73738777 73738982 -168925371 + MIR SINE MIR 20 246 -16 773 254 76 0 chr1 73739555 73739791 -168924562 + MIR SINE MIR 9 262 0 1861 199 112 35 chr1 73739816 73740299 -168924054 + MLT2B1 LTR ERVL 1 520 0 200 158 18 0 chr1 73741027 73741084 -168923269 + (TATAA)n Simple_repeat Simple_repeat 1 58 0 54 62 0 0 chr1 73741128 73741224 -168923129 + AT_rich Low_complexity Low_complexity 1 96 0 22 0 0 0 chr1 73741249 73741271 -168923082 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 73741999 73742029 -168922324 + AT_rich Low_complexity Low_complexity 1 30 0 196 355 37 19 chr1 73742394 73742501 -168921852 - L3 LINE CR1 -802 775 667 617 306 36 0 chr1 73743032 73743228 -168921125 + MIR SINE MIR 15 217 -45 230 319 155 17 chr1 73743660 73743776 -168920577 + MER5A DNA MER1_type 18 149 -40 2131 96 10 10 chr1 73743778 73744070 -168920283 + AluSg SINE Alu 1 292 -18 28 0 0 0 chr1 73744976 73745004 -168919349 + AT_rich Low_complexity Low_complexity 1 28 0 3846 158 9 10 chr1 73745004 73745682 -168918671 - L1PA16 LINE L1 -12 6154 5478 2472 119 0 0 chr1 73745690 73746051 -168918302 - L1PA13 LINE L1 -9 6154 5794 3351 141 35 22 chr1 73746051 73746850 -168917503 + L1MB1 LINE L1 5064 5864 -325 244 250 17 0 chr1 73747425 73747485 -168916868 - L2 LINE L2 -556 2758 2698 3858 64 4 0 chr1 73747642 73748144 -168916209 + L1PA7 LINE L1 5649 6152 -2 22 80 0 0 chr1 73748742 73748792 -168915561 + AT_rich Low_complexity Low_complexity 1 50 0 700 197 36 7 chr1 73749053 73749190 -168915163 - MLT1A1 LTR MaLR -29 336 196 470 160 0 32 chr1 73749187 73749281 -168915072 - MLT1A1 LTR MaLR -273 92 2 * 350 340 107 19 chr1 73749480 73749686 -168914667 + MIR SINE MIR 30 253 -9 181 273 0 0 chr1 73750110 73750154 -168914199 - L2 LINE L2 -4 3268 3225 6689 154 56 14 chr1 73751615 73752864 -168911489 + HSMAR2 DNA Mariner 1 1302 0 240 247 82 75 chr1 73754053 73754199 -168910154 + L2 LINE L2 3161 3307 -6 580 318 96 0 chr1 73754345 73754584 -168909769 - MIR SINE MIR 0 262 1 25 31 0 0 chr1 73754755 73754787 -168909566 + AT_rich Low_complexity Low_complexity 1 32 0 339 160 0 40 chr1 73755022 73755097 -168909256 + MIR SINE MIR 118 189 -73 509 113 0 12 chr1 73755130 73755210 -168909143 + L1PA15 LINE L1 6085 6163 -2 201 300 0 0 chr1 73756109 73756219 -168908134 + (TA)n Simple_repeat Simple_repeat 2 111 0 2142 239 54 42 chr1 73756275 73756919 -168907434 + MER82 DNA MER2_type 1 652 -1 27 29 0 0 chr1 73757665 73757699 -168906654 + AT_rich Low_complexity Low_complexity 1 34 0 6059 187 29 4 chr1 73758364 73759495 -168904858 - MSTA-int LTR MaLR -492 1159 1 1913 210 54 10 chr1 73759495 73759904 -168904449 - MSTA LTR MaLR 0 428 2 2006 134 0 0 chr1 73759972 73760264 -168904089 - AluSx SINE Alu -20 292 1 369 0 0 0 chr1 73760282 73760323 -168904030 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1683 130 67 0 chr1 73760325 73760578 -168903775 - AluSx SINE Alu -31 281 12 1775 207 5 11 chr1 73760714 73761081 -168903272 + MLT1A1 LTR MaLR 1 365 0 872 163 179 67 chr1 73761674 73761914 -168902439 + MLT2C2 LTR ERVL 5 271 -193 241 213 0 0 chr1 73761992 73762039 -168902314 + MLT2C2 LTR ERVL 418 464 0 1788 173 62 0 chr1 73763155 73763478 -168900875 + MER2 DNA MER2_type 3 345 0 407 108 0 0 chr1 73763813 73763878 -168900475 - AluSp SINE Alu -14 299 235 1180 139 6 0 chr1 73763878 73764050 -168900303 - AluSp SINE Alu -140 173 1 195 139 0 0 chr1 73764372 73764408 -168899945 + (GA)n Simple_repeat Simple_repeat 1 36 0 2357 84 0 0 chr1 73766126 73766425 -168897928 + AluY SINE Alu 1 299 -12 213 217 0 0 chr1 73767080 73767126 -168897227 + L2 LINE L2 3268 3313 0 2075 89 10 20 chr1 73767249 73767553 -168896800 - AluSc SINE Alu -8 301 1 22 0 0 0 chr1 73767741 73767763 -168896590 + AT_rich Low_complexity Low_complexity 1 22 0 2756 13 0 0 chr1 73768745 73769051 -168895302 + AluYa5 SINE Alu 1 306 -5 186 356 9 17 chr1 73769057 73769172 -168895181 + MIR SINE MIR 149 262 0 954 226 9 18 chr1 73769833 73770054 -168894299 + MER20 DNA MER1_type 1 219 0 473 324 134 0 chr1 73771710 73771926 -168892427 - MIR SINE MIR 0 262 18 312 269 298 29 chr1 73772122 73772293 -168892060 - MIR SINE MIR -15 247 31 2144 140 20 0 chr1 73773373 73773715 -168890638 + L1PB4 LINE L1 5795 6143 -13 244 322 26 26 chr1 73774203 73774318 -168890035 + L2 LINE L2 3199 3313 0 21 36 0 0 chr1 73774567 73774595 -168889758 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr1 73774850 73774886 -168889467 + AT_rich Low_complexity Low_complexity 1 36 0 240 316 48 75 chr1 73775864 73776051 -168888302 + MIR SINE MIR 20 201 -61 31 44 0 0 chr1 73776107 73776152 -168888201 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr1 73776376 73776411 -168887942 + AT_rich Low_complexity Low_complexity 1 35 0 35 71 0 0 chr1 73776612 73776682 -168887671 + AT_rich Low_complexity Low_complexity 1 70 0 28 0 0 0 chr1 73777437 73777465 -168886888 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 73777980 73778009 -168886344 + AT_rich Low_complexity Low_complexity 1 29 0 360 0 0 0 chr1 73778428 73778468 -168885885 + (CA)n Simple_repeat Simple_repeat 2 41 0 334 220 127 17 chr1 73778766 73778884 -168885469 - MIR SINE MIR -9 253 123 451 324 57 11 chr1 73779961 73780137 -168884216 - MIR SINE MIR -32 230 47 198 361 59 17 chr1 73780177 73780296 -168884057 + L2 LINE L2 3190 3313 0 25 0 0 0 chr1 73780434 73780459 -168883894 + AT_rich Low_complexity Low_complexity 1 25 0 390 259 121 36 chr1 73781195 73781361 -168882992 + MIR SINE MIR 22 201 -61 249 318 31 16 chr1 73781747 73781889 -168882464 + MIR SINE MIR 5 111 -97 275 213 49 0 chr1 73782661 73782722 -168881631 - MIR SINE MIR -18 244 181 238 303 76 0 chr1 73782750 73782816 -168881537 - MIR SINE MIR -109 99 29 1040 208 5 15 chr1 73782986 73783188 -168881165 + MER6B DNA MER2_type 11 210 0 2374 94 5 57 chr1 73783384 73783756 -168880597 + THE1A LTR MaLR 3 355 0 200 189 27 0 chr1 73783928 73783965 -168880388 + CT-rich Low_complexity Low_complexity 1 38 0 287 286 47 41 chr1 73785231 73785402 -168878951 + MER112 DNA MER1_type 7 178 -82 26 0 0 0 chr1 73785440 73785466 -168878887 + AT_rich Low_complexity Low_complexity 1 26 0 201 235 86 49 chr1 73785587 73785668 -168878685 - L2 LINE L2 0 3272 3189 24 32 0 0 chr1 73787181 73787212 -168877141 + AT_rich Low_complexity Low_complexity 1 31 0 205 263 35 18 chr1 73787290 73787347 -168877006 - L3 LINE CR1 -54 1523 1466 1379 215 11 11 chr1 73787521 73787822 -168876531 + AluJo SINE Alu 5 305 0 668 294 57 4 chr1 73788487 73788735 -168875618 - LTR33A LTR ERVL 0 523 263 309 338 37 7 chr1 73788765 73788901 -168875452 - LTR33A LTR ERVL -325 198 59 23 33 0 0 chr1 73790801 73790831 -168873522 + AT_rich Low_complexity Low_complexity 1 30 0 269 324 14 14 chr1 73792839 73792981 -168871372 + GA-rich Low_complexity Low_complexity 2 143 0 241 313 6 42 chr1 73793290 73793456 -168870897 + A-rich Low_complexity Low_complexity 5 164 0 232 239 14 28 chr1 73793500 73793571 -168870782 + GA-rich Low_complexity Low_complexity 3 72 0 315 0 0 0 chr1 73794521 73794556 -168869797 + (T)n Simple_repeat Simple_repeat 1 35 0 240 204 0 20 chr1 73794645 73794694 -168869659 + CT-rich Low_complexity Low_complexity 3 50 0 187 91 23 23 chr1 73794815 73794859 -168869494 + (CGG)n Simple_repeat Simple_repeat 3 46 0 312 70 0 0 chr1 73794867 73794910 -168869443 + (CAG)n Simple_repeat Simple_repeat 1 43 0 21 71 0 0 chr1 73794910 73794952 -168869401 + GC_rich Low_complexity Low_complexity 1 42 0 246 216 0 0 chr1 73795017 73795091 -168869262 + A-rich Low_complexity Low_complexity 1 74 0 1236 58 0 35 chr1 73798276 73798448 -168865905 - L1PA5 LINE L1 -6 6148 5983 682 204 119 40 chr1 73798748 73798794 -168865559 - MER20 DNA MER1_type -1 218 177 414 0 0 0 chr1 73798794 73798840 -168865513 + (TG)n Simple_repeat Simple_repeat 1 46 0 682 204 119 40 chr1 73798840 73798994 -168865359 - MER20 DNA MER1_type -42 177 2 555 14 0 0 chr1 73800076 73800147 -168864206 - L1PA2 LINE L1 -1 6154 6084 669 13 0 0 chr1 73800147 73800223 -168864130 + L1PA3 LINE L1 6018 6093 -62 23 33 0 0 chr1 73800258 73800288 -168864065 + AT_rich Low_complexity Low_complexity 1 30 0 266 272 49 87 chr1 73800825 73801009 -168863344 - L1ME3A LINE L1 -21 6149 5973 441 233 45 28 chr1 73801119 73801295 -168863058 - L1ME3A LINE L1 -239 5931 5753 6407 219 92 12 chr1 73801436 73801531 -168862822 + L1 LINE L1 2949 3035 -3111 2351 77 0 3 chr1 73801531 73801828 -168862525 + AluSx SINE Alu 1 296 -16 6407 219 92 12 chr1 73801828 73803650 -168860703 + L1 LINE L1 3035 5019 -1127 22 35 0 0 chr1 73804061 73804090 -168860263 + AT_rich Low_complexity Low_complexity 1 29 0 255 188 47 62 chr1 73805084 73805148 -168859205 + L3 LINE CR1 1372 1434 -143 22 56 0 0 chr1 73805382 73805418 -168858935 + AT_rich Low_complexity Low_complexity 1 36 0 194 280 65 11 chr1 73805463 73805556 -168858797 - MIR SINE MIR -65 197 100 200 220 55 0 chr1 73807064 73807126 -168857227 + MIR SINE MIR 111 176 -86 473 242 174 25 chr1 73807378 73807539 -168856814 - MER5A DNA MER1_type -1 188 4 35 0 0 0 chr1 73807818 73807853 -168856500 + AT_rich Low_complexity Low_complexity 1 35 0 8032 243 21 22 chr1 73809134 73811832 -168852521 - L1PA13 LINE L1 -2493 4304 1609 212 0 36 0 chr1 73811832 73811860 -168852493 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8032 243 21 22 chr1 73811860 73811936 -168852417 - L1PA13 LINE L1 -5188 1609 1534 1828 176 79 36 chr1 73812237 73812771 -168851582 + MLT2A2 LTR ERVL 1 554 0 300 328 35 45 chr1 73813219 73813533 -168850820 - L1M2 LINE L1 -6534 315 5 1768 129 8 11 chr1 73813971 73814234 -168850119 + AluSx SINE Alu 1 262 -50 285 287 51 145 chr1 73814234 73814530 -168849823 + L2 LINE L2 2229 2496 -818 1600 104 0 0 chr1 73815697 73815918 -168848435 + AluSg/x SINE Alu 69 289 -23 414 85 0 0 chr1 73815918 73815977 -168848376 + (GGGGA)n Simple_repeat Simple_repeat 4 62 0 3294 18 8 0 chr1 73816137 73816520 -168847833 - L1P2 LINE L1 -420 5735 5350 358 40 0 0 chr1 73816520 73816569 -168847784 + L1PA4 LINE L1 6106 6155 0 24 32 0 0 chr1 73817243 73817274 -168847079 + AT_rich Low_complexity Low_complexity 1 31 0 363 237 213 24 chr1 73818241 73818427 -168845926 - MLT1E2 LTR MaLR -280 225 5 21 71 0 0 chr1 73818537 73818579 -168845774 + AT_rich Low_complexity Low_complexity 1 42 0 23 110 0 0 chr1 73818841 73818941 -168845412 + AT_rich Low_complexity Low_complexity 1 100 0 234 264 45 91 chr1 73818964 73819074 -168845279 + L2 LINE L2 3204 3308 -5 33 41 0 41 chr1 73819471 73819544 -168844809 + AT_rich Low_complexity Low_complexity 1 70 0 2020 126 0 3 chr1 73820051 73820367 -168843986 - AluY SINE Alu 0 315 1 252 0 0 0 chr1 73820368 73820396 -168843957 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1847 134 11 11 chr1 73820396 73820680 -168843673 - AluSq SINE Alu -27 286 3 235 205 12 72 chr1 73820779 73820862 -168843491 - L1ME LINE L1 -319 5802 5725 2299 133 39 6 chr1 73821164 73821525 -168842828 - THE1C LTR MaLR -2 373 1 8544 126 52 50 chr1 73821525 73823102 -168841251 - THE1C-int LTR MaLR 0 1580 1 2379 131 16 11 chr1 73823102 73823475 -168840878 - THE1C LTR MaLR 0 375 1 887 281 63 8 chr1 73823503 73823741 -168840612 + MIR SINE MIR 8 258 -4 2542 100 6 0 chr1 73823741 73824092 -168840261 + THE1A LTR MaLR 1 353 -2 699 182 0 0 chr1 73824396 73824517 -168839836 - FLAM_A SINE Alu -10 123 3 2823 200 12 13 chr1 73824754 73824874 -168839479 + L1PA16 LINE L1 4680 4799 -1367 2252 109 0 0 chr1 73824874 73825176 -168839177 + AluSc SINE Alu 1 302 -7 2823 200 12 13 chr1 73825176 73825859 -168838494 + L1PA16 LINE L1 4799 5476 -690 14579 152 22 19 chr1 73825865 73829389 -168834964 - L1PA10 LINE L1 0 6168 2632 272 27 27 0 chr1 73829389 73829426 -168834927 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 11225 38 7 0 chr1 73829428 73831546 -168832807 - L1PA5 LINE L1 -19 6135 4009 14969 41 0 0 chr1 73831546 73833406 -168830947 + L1PA5 LINE L1 2140 3999 -2147 2687 159 2 2 chr1 73833404 73833856 -168830497 - L1PA10 LINE L1 -3506 2640 2189 * 4093 121 30 50 chr1 73833856 73834569 -168829784 + L1PA16 LINE L1 5460 6157 -9 235 317 44 6 chr1 73834883 73835063 -168829290 - L1MDa LINE L1 -3905 2635 2449 25 51 0 0 chr1 73835176 73835215 -168829138 + AT_rich Low_complexity Low_complexity 1 39 0 423 0 0 0 chr1 73835524 73835571 -168828782 + (CA)n Simple_repeat Simple_repeat 1 47 0 255 278 159 8 chr1 73835732 73835858 -168828495 - MLT1J2 LTR MaLR -301 149 5 234 81 0 0 chr1 73836704 73836741 -168827612 + (CA)n Simple_repeat Simple_repeat 2 38 0 550 198 0 0 chr1 73837040 73837136 -168827217 - FLAM_A SINE Alu -29 113 18 32 0 0 0 chr1 73837434 73837466 -168826887 + AT_rich Low_complexity Low_complexity 1 32 0 414 354 114 0 chr1 73837711 73837886 -168826467 + MER91A DNA MER1_type 1 195 -1 26 64 0 0 chr1 73838292 73838339 -168826014 + AT_rich Low_complexity Low_complexity 1 47 0 260 274 119 47 chr1 73838495 73838613 -168825740 - L1MC/D LINE L1 -471 5650 5542 2103 134 22 27 chr1 73838613 73838979 -168825374 + THE1B LTR MaLR 1 364 0 260 274 119 47 chr1 73838979 73839170 -168825183 - L1MC/D LINE L1 -579 5542 5337 22 0 0 0 chr1 73839850 73839872 -168824481 + AT_rich Low_complexity Low_complexity 1 22 0 517 174 188 0 chr1 73839997 73840141 -168824212 - L1MB7 LINE L1 -13 6171 6001 721 114 0 0 chr1 73840153 73840258 -168824095 + MLT1D LTR MaLR 401 505 0 812 251 51 18 chr1 73840259 73840498 -168823855 - L1M4 LINE L1 -559 5559 5329 1736 150 37 3 chr1 73840498 73840825 -168823528 - L1MA4 LINE L1 0 6300 5963 812 251 51 18 chr1 73840825 73841237 -168823116 - L1M4 LINE L1 -789 5329 4863 1217 200 15 71 chr1 73841300 73841500 -168822853 - AluJo SINE Alu 0 312 135 270 0 0 0 chr1 73841500 73841530 -168822823 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1217 200 15 71 chr1 73841530 73841654 -168822699 - AluJo SINE Alu -177 135 6 2427 249 97 47 chr1 73841657 73842643 -168821710 - L1M4 LINE L1 -1378 4702 3651 4363 112 13 13 chr1 73842643 73843333 -168821020 - L1PA14 LINE L1 -12 6149 5460 2427 249 97 47 chr1 73843333 73843465 -168820888 - L1M4 LINE L1 -2429 3651 3527 265 302 9 0 chr1 73843626 73843732 -168820621 - L1M4 LINE L1 -5096 974 868 412 297 93 32 chr1 73843741 73844342 -168820011 - L1M4c LINE L1 -4625 1757 1067 303 327 91 20 chr1 73845138 73845337 -168819016 - L1M4 LINE L1 -5856 214 2 349 333 114 15 chr1 73845338 73845743 -168818610 - L1M4 LINE L1 -2786 3294 2850 6519 64 17 14 chr1 73845796 73846059 -168818294 + L1PA7 LINE L1 5217 5478 -676 2257 107 3 0 chr1 73846059 73846359 -168817994 + AluSp SINE Alu 1 301 -12 6519 64 17 14 chr1 73846359 73847027 -168817326 + L1PA7 LINE L1 5478 6150 -4 435 343 64 23 chr1 73847829 73848048 -168816305 - MIR SINE MIR -29 233 6 43 35 0 0 chr1 73848633 73848690 -168815663 + AT_rich Low_complexity Low_complexity 1 57 0 282 29 0 0 chr1 73848758 73848793 -168815560 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 31 0 0 chr1 73849765 73849797 -168814556 + AT_rich Low_complexity Low_complexity 1 32 0 204 125 0 0 chr1 73851576 73851608 -168812745 + (A)n Simple_repeat Simple_repeat 1 32 0 1482 221 146 5 chr1 73851724 73852163 -168812190 - MLT1D LTR MaLR -2 503 3 604 297 45 49 chr1 73853050 73853296 -168811057 - MIR SINE MIR -1 261 17 192 77 0 0 chr1 73853416 73853442 -168810911 + (A)n Simple_repeat Simple_repeat 1 26 0 316 311 19 28 chr1 73854157 73854263 -168810090 + MIR SINE MIR 48 152 -110 2134 149 77 15 chr1 73856990 73857289 -168807064 + MSTA LTR MaLR 1 333 -95 1931 139 13 43 chr1 73857289 73857664 -168806689 + THE1B LTR MaLR 1 364 0 2134 149 77 15 chr1 73857664 73857767 -168806586 + MSTA LTR MaLR 333 428 0 229 116 47 0 chr1 73858422 73858465 -168805888 + L1M2 LINE L1 2441 2485 -4364 447 305 30 25 chr1 73858512 73858712 -168805641 + L1MB8 LINE L1 1613 1813 -4571 3892 240 66 46 chr1 73859044 73860743 -168803610 + L1MB8 LINE L1 2883 4615 -1767 295 41 41 0 chr1 73861353 73861402 -168802951 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2801 234 31 32 chr1 73862278 73862912 -168801441 + L1MB8 LINE L1 4594 5227 -1193 2251 107 0 0 chr1 73862912 73863212 -168801141 + AluSg SINE Alu 1 300 -10 2801 234 31 32 chr1 73863212 73863226 -168801127 + L1MB8 LINE L1 5227 5240 -1180 459 0 0 0 chr1 73863226 73863277 -168801076 + (CA)n Simple_repeat Simple_repeat 2 52 0 2801 234 31 32 chr1 73863277 73864150 -168800203 + L1MB8 LINE L1 5240 6112 -308 * 3965 188 2 19 chr1 73864145 73864979 -168799374 - L1PA15 LINE L1 -1321 4825 4006 5796 143 13 5 chr1 73864980 73866287 -168798066 + L1PA15 LINE L1 4839 6150 -15 704 237 6 17 chr1 73866293 73866470 -168797883 + L1MB8 LINE L1 6100 6274 -140 18349 91 3 16 chr1 73866488 73869954 -168794399 - L1PA7 LINE L1 -2 6152 2721 5831 102 6 25 chr1 73869961 73869975 -168794378 + L1P LINE L1 1824 1837 -4309 2350 92 0 3 chr1 73869975 73870280 -168794073 - AluSp SINE Alu -9 304 1 5831 102 6 25 chr1 73870280 73871150 -168793203 + L1P LINE L1 1837 2691 -3455 231 217 87 0 chr1 73871150 73871219 -168793134 + L1MB8 LINE L1 6335 6409 -5 847 271 113 33 chr1 73871224 73871350 -168793003 + L1ME2 LINE L1 3850 3965 -2181 2260 108 38 27 chr1 73871350 73871721 -168792632 + THE1C LTR MaLR 1 375 0 847 271 113 33 chr1 73871721 73872082 -168792271 + L1ME2 LINE L1 3965 4376 -1770 273 263 0 34 chr1 73872077 73872195 -168792158 + L1ME2 LINE L1 4585 4698 -1448 * 1553 266 59 10 chr1 73872249 73872741 -168791612 + L1ME2 LINE L1 5486 6001 -163 626 181 40 13 chr1 73872788 73872937 -168791416 + L1MA10 LINE L1 6180 6332 -2 188 331 125 16 chr1 73873132 73873316 -168791037 - L2 LINE L2 -701 2613 2410 277 344 79 26 chr1 73873617 73873806 -168790547 - L3 LINE CR1 -42 1535 1337 254 346 101 0 chr1 73873987 73874166 -168790187 - L3 LINE CR1 -297 1280 1084 199 280 27 13 chr1 73874201 73874276 -168790077 - L3 LINE CR1 -580 997 922 266 304 54 9 chr1 73874314 73874426 -168789927 - LTR67 LTR ERVL -8 549 433 2672 308 67 52 chr1 73875053 73876914 -168787439 + HERV16 LTR ERVL 1847 3793 -1971 365 315 34 45 chr1 73877037 73877215 -168787138 + HERV16 LTR ERVL 3912 4087 -1398 7723 130 18 11 chr1 73877236 73879621 -168784732 - L1MA1 LINE L1 0 7721 5317 14719 179 43 6 chr1 73879628 73882240 -168782113 - L1MA1 LINE L1 -4745 2820 102 193 29 29 29 chr1 73882240 73882275 -168782078 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 14719 179 43 6 chr1 73882275 73882366 -168781987 - L1MA1 LINE L1 -7463 102 16 507 287 188 6 chr1 73882379 73882560 -168781793 + HERV16 LTR ERVL 4144 4357 -1407 29 28 0 0 chr1 73882948 73882984 -168781369 + AT_rich Low_complexity Low_complexity 1 36 0 291 345 78 17 chr1 73883094 73883210 -168781143 - L2 LINE L2 -2 3270 3148 530 302 22 28 chr1 73884171 73884350 -168780003 - MIR SINE MIR -27 235 58 257 196 54 0 chr1 73885293 73885385 -168778968 + (TA)n Simple_repeat Simple_repeat 2 98 0 2349 42 0 3 chr1 73886031 73886348 -168778005 - AluY SINE Alu 0 316 1 378 0 0 0 chr1 73886348 73886390 -168777963 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr1 73886603 73886625 -168777728 + AT_rich Low_complexity Low_complexity 1 22 0 295 175 32 0 chr1 73887063 73887126 -168777227 - Charlie2 DNA MER1_type -27 2835 2771 749 219 60 60 chr1 73887151 73887231 -168777122 + HsTC2 DNA Tc2 1527 1606 -292 2479 49 3 3 chr1 73887231 73887539 -168776814 + AluY SINE Alu 1 308 -3 749 219 60 60 chr1 73887539 73887827 -168776526 + HsTC2 DNA Tc2 1605 1895 -3 233 366 35 42 chr1 73887833 73887975 -168776378 - L2 LINE L2 -620 2694 2554 32 0 0 0 chr1 73888639 73888671 -168775682 + AT_rich Low_complexity Low_complexity 1 32 0 2058 135 28 25 chr1 73889837 73890200 -168774153 - THE1B LTR MaLR 0 364 1 10667 201 30 105 chr1 73890507 73891877 -168772476 + L1MA3 LINE L1 1 1472 -5535 2022 134 13 0 chr1 73891877 73892176 -168772177 + AluSx SINE Alu 1 303 -9 10667 201 30 105 chr1 73892176 73898366 -168765987 + L1MA3 LINE L1 1472 7002 -5 231 204 0 0 chr1 73899267 73899316 -168765037 + CT-rich Low_complexity Low_complexity 4 52 0 2457 162 7 5 chr1 73899376 73899953 -168764400 - L1M1 LINE L1 -743 5403 4888 232 250 53 0 chr1 73900236 73900312 -168764041 + L1MC4 LINE L1 6613 6692 -1350 834 241 18 9 chr1 73900344 73900564 -168763789 + L1PA16 LINE L1 5941 6162 -4 1371 152 0 0 chr1 73901590 73901794 -168762559 + AluSg/x SINE Alu 84 287 -25 192 40 0 0 chr1 73901798 73901823 -168762530 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 239 309 21 21 chr1 73902437 73902534 -168761819 + MER91A DNA MER1_type 18 114 -82 27 29 0 0 chr1 73902731 73902765 -168761588 + AT_rich Low_complexity Low_complexity 1 34 0 2151 103 3 3 chr1 73902940 73903240 -168761113 + AluSx SINE Alu 1 300 -12 3698 25 0 2 chr1 73904598 73905041 -168759312 + L1PA4 LINE L1 5709 6150 -5 24 0 0 0 chr1 73906839 73906863 -168757490 + AT_rich Low_complexity Low_complexity 1 24 0 543 308 73 38 chr1 73907512 73907882 -168756471 + L2 LINE L2 2347 2729 -585 372 317 105 38 chr1 73908262 73908606 -168755747 - MLT1J2 LTR MaLR 0 450 84 1707 124 0 8 chr1 73908675 73908932 -168755421 - AluSx SINE Alu -9 303 49 316 279 55 48 chr1 73909076 73909242 -168755111 + L1MEc LINE L1 2152 2261 -3954 425 19 19 0 chr1 73909242 73909296 -168755057 + (CA)n Simple_repeat Simple_repeat 2 56 0 316 279 55 48 chr1 73909296 73909459 -168754894 + L1MEc LINE L1 2261 2422 -3793 27 87 0 0 chr1 73909503 73909572 -168754781 + AT_rich Low_complexity Low_complexity 1 69 0 230 266 93 87 chr1 73909588 73910404 -168753949 + L1MEc LINE L1 2713 3533 -2682 253 303 189 4 chr1 73910432 73910660 -168753693 + L1MEc LINE L1 4040 4309 -1906 1694 159 0 40 chr1 73910672 73910993 -168753360 + AluJo SINE Alu 3 310 -2 533 84 24 0 chr1 73910995 73911078 -168753275 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 248 265 82 7 chr1 73911149 73911296 -168753057 + L1MEc LINE L1 4381 4538 -1677 736 348 112 20 chr1 73911320 73911712 -168752641 + L2 LINE L2 2730 3194 -119 180 0 0 0 chr1 73911712 73911732 -168752621 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 736 348 112 20 chr1 73911732 73911860 -168752493 + L2 LINE L2 3194 3309 -4 318 378 102 39 chr1 73912311 73912721 -168751632 + L2 LINE L2 2807 3242 -30 415 256 6 6 chr1 73912741 73912913 -168751440 + GA-rich Low_complexity Low_complexity 1 172 0 596 239 196 0 chr1 73912954 73913138 -168751215 - MER58A DNA MER1_type 0 224 5 24 53 0 0 chr1 73914681 73914719 -168749634 + AT_rich Low_complexity Low_complexity 1 38 0 430 345 74 9 chr1 73914958 73915187 -168749166 - MIR SINE MIR -17 245 2 21 0 0 0 chr1 73915658 73915679 -168748674 + AT_rich Low_complexity Low_complexity 1 21 0 290 290 114 85 chr1 73917680 73917987 -168746366 + L2 LINE L2 2966 3281 -32 570 330 40 4 chr1 73918087 73918314 -168746039 - MIR SINE MIR -3 259 25 259 148 16 16 chr1 73918364 73918425 -168745928 + GA-rich Low_complexity Low_complexity 3 63 0 294 95 0 0 chr1 73918744 73918786 -168745567 + (TAA)n Simple_repeat Simple_repeat 2 43 0 534 297 100 7 chr1 73919055 73919245 -168745108 - MIR SINE MIR -49 213 9 183 167 0 0 chr1 73919863 73919905 -168744448 + A-rich Low_complexity Low_complexity 1 42 0 2509 158 12 2 chr1 73919936 73920366 -168743987 + MER57B LTR ERV1 1 434 0 2194 152 5 19 chr1 73920522 73920891 -168743462 - THE1B LTR MaLR 0 364 1 10517 110 28 0 chr1 73920891 73922428 -168741925 - THE1B-int LTR MaLR 0 1580 1 2331 144 5 14 chr1 73922428 73922795 -168741558 - THE1B LTR MaLR 0 364 1 200 240 20 0 chr1 73922913 73922963 -168741390 + MIR SINE MIR 124 174 -88 1719 188 177 77 chr1 73923067 73923744 -168740609 - LTR1B LTR ERV1 -74 752 8 188 236 333 0 chr1 73923828 73923900 -168740453 + L2 LINE L2 3207 3302 -11 791 256 23 6 chr1 73923923 73924099 -168740254 - MER5A DNA MER1_type -9 180 2 228 316 59 22 chr1 73924630 73924766 -168739587 - L2 LINE L2 -1029 2285 2145 29 28 0 0 chr1 73925211 73925247 -168739106 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 73927075 73927097 -168737256 + AT_rich Low_complexity Low_complexity 1 22 0 361 318 58 21 chr1 73928821 73929063 -168735290 - MER89-int LTR ERV1 -3794 3007 2757 385 340 102 0 chr1 73931846 73932081 -168732272 - MER90 LTR ERV1 0 575 317 2996 157 35 40 chr1 73932090 73932689 -168731664 + L1MC1 LINE L1 5733 6328 -5 1120 199 0 15 chr1 73932745 73932983 -168731370 + AluJb SINE Alu 86 320 0 5424 42 0 1 chr1 73933367 73934057 -168730296 + L1PA5 LINE L1 5475 6163 0 631 209 105 7 chr1 73934057 73934210 -168730143 + MLT1J2 LTR MaLR 281 448 -2 1633 289 114 38 chr1 73934401 73935563 -168728790 - L2 LINE L2 -83 3230 1975 346 320 57 29 chr1 73935972 73936147 -168728206 - L3 LINE CR1 -171 1406 1227 199 150 25 0 chr1 73936259 73936299 -168728054 - L3 LINE CR1 -546 1031 991 186 133 0 0 chr1 73936311 73936341 -168728012 + (ATG)n Simple_repeat Simple_repeat 2 31 0 2259 105 3 0 chr1 73936483 73936788 -168727565 - AluSp SINE Alu -7 306 1 293 346 61 21 chr1 73936939 73937131 -168727222 + MIR SINE MIR 2 202 -6 503 272 92 28 chr1 73937372 73937589 -168726764 - MIR SINE MIR 0 262 32 204 40 0 0 chr1 73938360 73938385 -168725968 + (CAAT)n Simple_repeat Simple_repeat 3 27 0 250 277 75 42 chr1 73938541 73938655 -168725698 - MIR SINE MIR -65 143 43 324 307 123 0 chr1 73938974 73939137 -168725216 - MIR SINE MIR -16 246 64 620 191 0 0 chr1 73939335 73939450 -168724903 + FLAM_A SINE Alu 1 115 -18 529 80 23 0 chr1 73939450 73939538 -168724815 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 318 287 20 0 chr1 73940426 73940527 -168723826 - MLT1J1 LTR MaLR 0 446 344 211 232 29 29 chr1 73940929 73940998 -168723355 - L2 LINE L2 -270 3002 2934 239 333 68 41 chr1 73941072 73941219 -168723134 - L2 LINE L2 -4 3268 3118 236 339 71 18 chr1 73941361 73941473 -168722880 - L2 LINE L2 0 3313 3196 192 77 0 0 chr1 73943034 73943060 -168721293 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 223 255 248 47 chr1 73943221 73943370 -168720983 - MER5A DNA MER1_type -9 180 2 245 281 34 22 chr1 73943388 73943477 -168720876 + L2 LINE L2 2230 2319 -995 395 179 15 0 chr1 73943551 73943618 -168720735 + Tigger2 DNA MER2_type 2 69 -2649 * 2192 181 57 7 chr1 73943608 73944033 -168720320 + Tigger2 DNA MER2_type 2273 2718 0 313 152 0 0 chr1 73944131 73944177 -168720176 - MSTD LTR MaLR -270 126 81 1483 209 72 14 chr1 73944551 73944896 -168719457 - MLT1A1 LTR MaLR 0 365 1 338 230 23 0 chr1 73945068 73945155 -168719198 - MER53 DNA DNA -76 113 25 320 204 68 0 chr1 73945080 73945168 -168719185 + MER53 DNA DNA 96 189 0 * 546 181 0 0 chr1 73945211 73945316 -168719037 + CT-rich Low_complexity Low_complexity 3 107 0 211 336 17 35 chr1 73945318 73945434 -168718919 + L2 LINE L2 3160 3273 -40 211 262 10 87 chr1 73946325 73946428 -168717925 - L2 LINE L2 0 3313 3219 685 331 98 66 chr1 73946783 73947521 -168716832 + L2 LINE L2 464 1224 -2090 324 306 21 72 chr1 73947567 73947760 -168716593 - L2 LINE L2 -5 3308 3126 251 278 69 52 chr1 73948517 73948690 -168715663 + L2 LINE L2 1811 1986 -1328 1682 182 3 46 chr1 73949075 73949399 -168714954 - AluJo SINE Alu -2 310 1 188 324 66 78 chr1 73951773 73952029 -168712324 + L2 LINE L2 2722 2974 -340 691 330 77 48 chr1 73952512 73953287 -168711066 + L2 LINE L2 1475 2272 -1042 398 395 35 44 chr1 73953527 73953866 -168710487 + L2 LINE L2 2935 3270 -2 194 370 49 25 chr1 73954974 73955136 -168709217 + L2 LINE L2 2621 2786 -528 2123 112 7 0 chr1 73955460 73955754 -168708599 - AluSx SINE Alu -14 298 3 2152 99 0 0 chr1 73956958 73957241 -168707112 + AluSg SINE Alu 1 283 -27 405 238 0 0 chr1 73957241 73957342 -168707011 + (TA)n Simple_repeat Simple_repeat 1 101 0 2118 122 0 0 chr1 73958930 73959225 -168705128 - AluSx SINE Alu -16 296 2 290 274 9 18 chr1 73959412 73959525 -168704828 + (TA)n Simple_repeat Simple_repeat 2 113 0 22 70 0 0 chr1 73959794 73959837 -168704516 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chr1 73960173 73960215 -168704138 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr1 73960691 73960726 -168703627 + AT_rich Low_complexity Low_complexity 1 35 0 208 28 83 0 chr1 73961727 73961763 -168702590 + A-rich Low_complexity Low_complexity 2 40 0 2020 94 3 88 chr1 73961976 73962315 -168702038 + AluSg SINE Alu 1 310 0 539 242 238 45 chr1 73962411 73962634 -168701719 + L2 LINE L2 3046 3311 -2 1856 156 0 3 chr1 73963866 73964161 -168700192 - AluSx SINE Alu -18 294 1 23 0 0 0 chr1 73964168 73964191 -168700162 + AT_rich Low_complexity Low_complexity 1 23 0 336 318 63 31 chr1 73964568 73964821 -168699532 - MIR SINE MIR 0 262 5 1802 143 7 18 chr1 73965094 73965380 -168698973 + AluJo SINE Alu 1 283 -29 1126 197 60 150 chr1 73965474 73966027 -168698326 + MLT1D LTR MaLR 3 505 0 21 0 0 0 chr1 73967725 73967746 -168696607 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 73967852 73967874 -168696479 + AT_rich Low_complexity Low_complexity 1 22 0 197 313 31 21 chr1 73968293 73968389 -168695964 - L2 LINE L2 -170 3143 3047 23 0 0 0 chr1 73969276 73969299 -168695054 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr1 73970042 73970079 -168694274 + AT_rich Low_complexity Low_complexity 1 37 0 9030 152 35 1 chr1 73971048 73972585 -168691768 + Tigger1 DNA MER2_type 31 1619 -799 4556 17 0 0 chr1 73972585 73973101 -168691252 - L1PA3 LINE L1 -115 6040 5525 794 21 0 11 chr1 73973099 73973230 -168691123 + L1PA3 LINE L1 6038 6167 0 * 4183 140 61 18 chr1 73973230 73973320 -168691033 + Tigger1 DNA MER2_type 1613 1698 -720 2285 95 10 93 chr1 73973320 73973729 -168690624 - THE1C LTR MaLR 0 375 1 4183 140 61 18 chr1 73973729 73974410 -168689943 + Tigger1 DNA MER2_type 1698 2417 -1 1594 175 62 0 chr1 73974416 73974753 -168689600 + MER46B DNA MER2_type 4 236 0 5072 184 12 1 chr1 73975580 73977124 -168687229 - L1MA6 LINE L1 0 6300 4686 2430 173 19 14 chr1 73977121 73977607 -168686746 + L1MA6 LINE L1 4197 4684 -1462 * 704 265 27 5 chr1 73977878 73978063 -168686290 + MER5A DNA MER1_type 1 189 0 2094 194 75 5 chr1 73978284 73978711 -168685642 - LTR32 LTR ERVL 0 471 15 417 74 0 0 chr1 73978711 73978765 -168685588 - LTR32 LTR ERVL -403 68 15 500 305 20 20 chr1 73978775 73978972 -168685381 - HERVL32 LTR ERVL -7 3411 3215 * 658 344 3 3 chr1 73978871 73979153 -168685200 - PRIMA41-int LTR ERV1 -286 7470 7189 397 307 71 0 chr1 73979029 73979169 -168685184 - HERVL66 LTR ERVL -213 4116 3967 * 1568 253 69 81 chr1 73980618 73981563 -168682790 - HERVL66 LTR ERVL -206 3212 2566 1836 237 88 47 chr1 73981565 73982096 -168682257 - MLT2B3 LTR ERVL -1 553 1 5667 209 63 64 chr1 73982096 73983679 -168680674 - HERVL32 LTR ERVL -696 2722 1142 3299 275 31 14 chr1 73983778 73984683 -168679670 - HERVL32 LTR ERVL -2448 970 51 2303 163 78 21 chr1 73984740 73985176 -168679177 - LTR32 LTR ERVL 0 471 11 24 32 0 0 chr1 73986201 73986232 -168678121 + AT_rich Low_complexity Low_complexity 1 31 0 29 70 0 0 chr1 73988146 73988203 -168676150 + AT_rich Low_complexity Low_complexity 1 57 0 458 321 62 33 chr1 73989207 73989450 -168674903 + MIR SINE MIR 13 262 0 1426 287 69 32 chr1 73989896 73990327 -168674026 - L1ME3 LINE L1 -33 6129 5715 387 0 0 0 chr1 73990327 73990370 -168673983 + (TA)n Simple_repeat Simple_repeat 1 43 0 1426 287 69 32 chr1 73990370 73991094 -168673259 - L1ME3 LINE L1 -447 5715 4929 24 0 0 0 chr1 73991714 73991738 -168672615 + AT_rich Low_complexity Low_complexity 1 24 0 200 221 26 26 chr1 73993180 73993257 -168671096 + (TTA)n Simple_repeat Simple_repeat 2 78 0 1216 209 141 116 chr1 73993732 73994243 -168670110 - MLT1E2 LTR MaLR 0 626 131 314 332 82 18 chr1 73994296 73994516 -168669837 + L1ME3A LINE L1 5665 5898 -272 2173 96 0 0 chr1 73994567 73994849 -168669504 + AluSc SINE Alu 13 294 -15 243 305 105 9 chr1 73995127 73995232 -168669121 - L2 LINE L2 -580 2734 2620 747 311 34 4 chr1 73995322 73995589 -168668764 - L2 LINE L2 -853 2461 2187 369 201 0 34 chr1 73995648 73995827 -168668526 + (TA)n Simple_repeat Simple_repeat 1 173 0 31 26 0 0 chr1 73995842 73995880 -168668473 + AT_rich Low_complexity Low_complexity 1 38 0 237 347 56 28 chr1 73996363 73996579 -168667774 - L2 LINE L2 -1795 1519 1298 1559 210 84 3 chr1 73997700 73998043 -168666310 - MLT1A2 LTR MaLR 0 374 4 216 158 0 0 chr1 73998355 73998393 -168665960 + (TA)n Simple_repeat Simple_repeat 1 38 0 2263 110 0 3 chr1 73998393 73998693 -168665660 - AluSx SINE Alu -11 301 3 1465 231 117 20 chr1 73998928 73999382 -168664971 + LTR50 LTR ERVL 15 512 -283 511 136 0 23 chr1 73999384 73999472 -168664881 - Tigger5 DNA MER2_type 0 2323 2238 709 193 206 5 chr1 73999550 73999768 -168664585 + LTR50 LTR ERVL 526 787 -8 1347 197 30 39 chr1 74000883 74001213 -168663140 + MLT2D LTR ERVL 1 327 -87 226 294 0 15 chr1 74053477 74053545 -168610808 - MIR SINE MIR -121 141 75 903 109 0 0 chr1 74053647 74053823 -168610530 + AluSg/x SINE Alu 157 332 0 250 226 78 61 chr1 74054711 74054826 -168609527 + MER103 DNA DNA 48 164 -2 601 309 50 6 chr1 74054955 74055136 -168609217 + MIR SINE MIR 46 234 -28 186 43 0 0 chr1 74055945 74055968 -168608385 + (TA)n Simple_repeat Simple_repeat 2 24 0 1658 182 73 0 chr1 74055993 74056333 -168608020 + MER47A DNA MER2_type 2 366 0 1957 126 7 10 chr1 74057347 74057649 -168606704 - AluSx SINE Alu -11 301 1 339 25 0 0 chr1 74057821 74057861 -168606492 + (A)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr1 74059020 74059056 -168605297 + AT_rich Low_complexity Low_complexity 1 36 0 1571 168 134 3 chr1 74059850 74060171 -168604182 + MLT1A1 LTR MaLR 3 365 0 411 284 104 52 chr1 74060216 74060427 -168603926 + L2 LINE L2 3077 3298 -15 414 57 0 0 chr1 74061604 74061657 -168602696 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 368 237 21 10 chr1 74063232 74063329 -168601024 + L1ME LINE L1 5562 5659 -462 278 253 67 0 chr1 74063929 74064004 -168600349 - MER116 DNA Mariner 0 80 1 27 49 0 0 chr1 74064016 74064057 -168600296 + AT_rich Low_complexity Low_complexity 1 41 0 593 280 81 55 chr1 74064469 74064630 -168599723 + MLT1H1 LTR MaLR 1 173 -382 240 35 0 0 chr1 74064630 74064659 -168599694 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 593 280 81 55 chr1 74064659 74064768 -168599585 + MLT1H1 LTR MaLR 173 278 -277 285 260 0 0 chr1 74064900 74064973 -168599380 + MLT1G1 LTR MaLR 496 568 -27 453 206 103 8 chr1 74064976 74065102 -168599251 + L1M4 LINE L1 4695 4832 -1314 381 321 103 12 chr1 74065393 74065558 -168598795 - MER91B DNA MER1_type -9 181 2 23 0 0 0 chr1 74065939 74065962 -168598391 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr1 74066459 74066480 -168597873 + (TG)n Simple_repeat Simple_repeat 2 22 0 255 316 110 13 chr1 74066592 74066747 -168597606 - L2 LINE L2 0 3313 3144 344 409 53 24 chr1 74067801 74068141 -168596212 + L3 LINE CR1 338 687 -890 348 299 101 34 chr1 74068385 74068592 -168595761 + L3 LINE CR1 1350 1570 -7 1241 233 94 6 chr1 74068946 74069276 -168595077 - MER63 DNA MER1_type -30 1032 674 587 231 118 21 chr1 74070672 74070858 -168593495 + MLT1J2 LTR MaLR 1 204 -246 597 96 0 0 chr1 74070962 74071045 -168593308 - AluSg SINE Alu -12 298 216 1023 69 0 8 chr1 74071060 74071190 -168593163 - AluSg SINE Alu -181 129 1 414 311 114 32 chr1 74071322 74071969 -168592384 + L1MC4a LINE L1 3600 4299 -1847 365 299 107 52 chr1 74071969 74072904 -168591449 + L1MC4a LINE L1 4549 5540 -624 181 211 19 58 chr1 74073027 74073079 -168591274 - MER5A DNA MER1_type -11 178 129 * 310 254 289 0 chr1 74073049 74073163 -168591190 + MER5A DNA MER1_type 43 189 0 350 312 0 11 chr1 74073176 74073269 -168591084 - MER5B DNA MER1_type 0 178 87 301 295 78 62 chr1 74073346 74073590 -168590763 + L1MC4a LINE L1 5679 5926 -1882 234 0 0 0 chr1 74074340 74074366 -168589987 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 347 227 27 120 chr1 74074893 74075043 -168589310 - MIR SINE MIR -10 252 117 575 275 79 18 chr1 74075198 74075427 -168588926 + MIR SINE MIR 19 261 -1 505 348 70 2 chr1 74076252 74076488 -168587865 - MIR SINE MIR 0 262 15 6882 64 2 0 chr1 74076828 74077500 -168586853 - L1PA7 LINE L1 0 6154 5487 2195 106 0 0 chr1 74077500 74077793 -168586560 - AluY SINE Alu -18 293 1 6882 64 2 0 chr1 74077793 74078274 -168586079 - L1PA7 LINE L1 -667 5487 5009 2241 299 72 33 chr1 74078407 74079577 -168584776 + L2 LINE L2 1455 2760 -554 3857 259 49 36 chr1 74079596 74080811 -168583542 + MLT1B-int LTR MaLR 140 1370 -1 1170 212 73 58 chr1 74080821 74081203 -168583150 + MLT1B LTR MaLR 3 390 0 830 324 144 22 chr1 74081203 74081710 -168582643 + L2 LINE L2 2755 3312 -1 39 68 0 0 chr1 74081784 74081858 -168582495 + AT_rich Low_complexity Low_complexity 1 74 0 7416 94 6 21 chr1 74082235 74083323 -168581030 + MER11C LTR ERVK 1 1071 0 36 53 0 0 chr1 74083989 74084046 -168580307 + AT_rich Low_complexity Low_complexity 1 57 0 235 330 11 0 chr1 74084404 74084492 -168579861 - MIR SINE MIR -26 236 148 2354 81 0 13 chr1 74084671 74084978 -168579375 - AluY SINE Alu -8 303 1 381 233 132 31 chr1 74086177 74086306 -168578047 - MIR SINE MIR -45 217 76 233 305 12 12 chr1 74087204 74087286 -168577067 - L2 LINE L2 -2 3311 3230 228 67 0 0 chr1 74087513 74087543 -168576810 + (TG)n Simple_repeat Simple_repeat 1 30 0 2226 131 121 5 chr1 74088345 74088726 -168575627 + MSTA LTR MaLR 1 425 -3 286 303 179 0 chr1 74089000 74089145 -168575208 - MIR SINE MIR -14 248 78 361 224 181 58 chr1 74089146 74089351 -168575002 + L2 LINE L2 2946 3175 -138 300 339 33 8 chr1 74089446 74089567 -168574786 + L2 LINE L2 3190 3313 0 215 279 0 0 chr1 74089578 74089621 -168574732 - MIR SINE MIR -184 78 36 612 0 0 0 chr1 74089641 74089709 -168574644 + (TTTTA)n Simple_repeat Simple_repeat 2 69 0 17574 135 10 12 chr1 74089715 74093466 -168570887 - L1PA10 LINE L1 -28 6140 2389 933 310 162 46 chr1 74093721 74094128 -168570225 + L2 LINE L2 951 1309 -2005 2371 143 3 0 chr1 74094128 74094491 -168569862 - THE1B LTR MaLR 0 364 1 933 310 162 46 chr1 74094491 74094945 -168569408 + L2 LINE L2 1309 1912 -1402 529 310 104 19 chr1 74095061 74095329 -168569024 + LTR16A LTR ERVL 155 445 -5 257 311 14 0 chr1 74095620 74095694 -168568659 + MER3 DNA MER1_type 38 112 -97 4862 130 18 15 chr1 74095712 74096506 -168567847 + L1PA15 LINE L1 5370 6165 0 359 126 0 69 chr1 74096662 74096749 -168567604 + Charlie5 DNA MER1_type 2538 2618 0 302 344 0 0 chr1 74096787 74096883 -168567470 + ERVL LTR ERVL 343 438 -4558 645 256 5 14 chr1 74097202 74097417 -168566936 + HAL1 LINE L1 971 1183 -1324 3724 303 68 18 chr1 74097544 74099140 -168565213 + ERVL LTR ERVL 1097 2835 -2161 600 331 59 31 chr1 74099177 74099571 -168564782 + ERVL LTR ERVL 2903 3309 -2176 1348 350 58 21 chr1 74099628 74100866 -168563487 + ERVL LTR ERVL 3457 4800 -727 225 389 87 16 chr1 74102169 74102295 -168562058 + MIR3 SINE MIR 15 149 -59 2677 224 84 27 chr1 74102319 74103061 -168561292 - L1ME2 LINE L1 -1 6163 5380 183 297 0 27 chr1 74103140 74103214 -168561139 - MER5B DNA MER1_type -21 157 86 544 351 41 8 chr1 74103335 74103580 -168560773 + MIR SINE MIR 2 254 -8 209 235 20 0 chr1 74106304 74106355 -168557998 + CT-rich Low_complexity Low_complexity 1 52 0 332 105 35 23 chr1 74107434 74107520 -168556833 + A-rich Low_complexity Low_complexity 2 88 0 209 350 0 0 chr1 74108031 74108091 -168556262 - L2 LINE L2 0 3272 3213 825 236 20 25 chr1 74108106 74108309 -168556044 - MER58A DNA MER1_type -16 208 7 262 417 22 7 chr1 74109297 74109436 -168554917 - L2 LINE L2 -20 3252 3112 350 222 0 0 chr1 74111775 74111838 -168552515 + L2 LINE L2 3210 3272 0 1438 246 45 40 chr1 74112026 74112470 -168551883 + MLT2B1 LTR ERVL 1 446 -74 360 0 0 0 chr1 74112683 74112723 -168551630 + (CA)n Simple_repeat Simple_repeat 1 40 0 844 298 124 18 chr1 74112724 74113221 -168551132 - MLT1H LTR MaLR -5 590 1 375 324 42 14 chr1 74113529 74113671 -168550682 + MIR SINE MIR 7 152 -110 1402 161 92 0 chr1 74114020 74114269 -168550084 + AluSx SINE Alu 38 309 -3 210 71 0 0 chr1 74114283 74114311 -168550042 + (TA)n Simple_repeat Simple_repeat 2 29 0 276 212 0 0 chr1 74114698 74114764 -168549589 + GA-rich Low_complexity Low_complexity 3 68 0 326 270 236 28 chr1 74115054 74115232 -168549121 - MIR SINE MIR -29 233 19 180 317 25 56 chr1 74115243 74115404 -168548949 - L3b LINE CR1 -326 1257 1102 210 310 155 25 chr1 74116460 74116660 -168547693 + L3 LINE CR1 621 846 -731 2116 121 0 26 chr1 74117009 74117322 -168547031 - AluSx SINE Alu -7 305 1 1729 218 16 43 chr1 74118518 74118941 -168545412 + MLT2D LTR ERVL 1 412 -2 23 78 0 0 chr1 74119050 74119101 -168545252 + AT_rich Low_complexity Low_complexity 1 51 0 219 331 81 3 chr1 74119383 74119544 -168544809 + MIR SINE MIR 2 219 -43 189 308 225 17 chr1 74119765 74119885 -168544468 - MIR3 SINE MIR -62 146 2 182 339 0 0 chr1 74120043 74120105 -168544248 + L3b LINE CR1 1397 1458 -125 26 50 0 0 chr1 74123146 74123186 -168541167 + AT_rich Low_complexity Low_complexity 1 40 0 609 246 93 22 chr1 74123344 74123527 -168540826 - MIR SINE MIR -6 256 61 336 127 0 0 chr1 74123529 74123584 -168540769 + (CCTA)n Simple_repeat Simple_repeat 1 55 0 1492 204 0 14 chr1 74123584 74123878 -168540475 - AluJo SINE Alu -22 290 1 339 89 0 0 chr1 74124186 74124242 -168540111 + (CA)n Simple_repeat Simple_repeat 1 56 0 1664 216 52 0 chr1 74124435 74124782 -168539571 - MLT1A1 LTR MaLR 0 365 1 620 158 13 51 chr1 74125061 74125114 -168539239 - L1MA8 LINE L1 -13 6278 6225 13832 139 23 26 chr1 74125114 74126620 -168537733 + Tigger1 DNA MER2_type 1 1496 -922 2154 108 3 13 chr1 74126620 74126925 -168537428 + AluSg SINE Alu 1 302 -8 13832 139 23 26 chr1 74126925 74127845 -168536508 + Tigger1 DNA MER2_type 1496 2418 0 620 158 13 51 chr1 74127845 74127949 -168536404 - L1MA8 LINE L1 -66 6225 6127 1571 206 3 0 chr1 74127949 74128270 -168536083 - AluJo SINE Alu 0 322 1 24 0 0 0 chr1 74129240 74129264 -168535089 + AT_rich Low_complexity Low_complexity 1 24 0 302 347 74 40 chr1 74129594 74129770 -168534583 + MIR SINE MIR 3 184 -78 205 271 17 17 chr1 74129800 74129859 -168534494 + MIR SINE MIR 1 59 -203 236 267 47 23 chr1 74130317 74130403 -168533950 + Charlie8 DNA MER1_type 2325 2412 -5 189 0 0 0 chr1 74130426 74130447 -168533906 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 259 294 0 0 chr1 74132145 74132213 -168532140 + L2 LINE L2 3242 3309 -4 2202 115 10 51 chr1 74132352 74132742 -168531611 - THE1C LTR MaLR -1 374 1 225 232 71 18 chr1 74134244 74134300 -168530053 - L2 LINE L2 0 3272 3214 1867 162 3 49 chr1 74135144 74135471 -168528882 + AluJb SINE Alu 1 312 0 1061 319 41 14 chr1 74136715 74137283 -168527070 + L2 LINE L2 2563 3147 -166 593 245 39 32 chr1 74137326 74137481 -168526872 - MER58A DNA MER1_type 0 157 2 268 294 74 61 chr1 74137483 74137646 -168526707 + L2 LINE L2 3141 3305 -8 246 279 54 62 chr1 74138519 74138648 -168525705 - MIR3 SINE MIR 0 208 81 729 224 161 24 chr1 74138922 74139127 -168525226 + MIR SINE MIR 8 240 -22 6081 123 9 1 chr1 74140506 74141438 -168522915 + L1PA11 LINE L1 5231 6174 0 301 265 73 44 chr1 74141698 74141834 -168522519 - MIR SINE MIR -41 221 82 3523 64 2 33 chr1 74143086 74143570 -168520783 + L1PA7 LINE L1 5679 6147 -7 242 282 106 0 chr1 74144692 74144777 -168519576 + MIR SINE MIR 97 190 -72 1911 109 0 73 chr1 74144885 74145187 -168519166 + AluSx SINE Alu 1 280 -32 243 373 0 8 chr1 74145272 74145398 -168518955 + L3 LINE CR1 1189 1313 -264 1366 247 88 6 chr1 74145470 74146013 -168518340 - MER69 DNA AcHobo -144 2382 1795 381 302 217 0 chr1 74146016 74146228 -168518125 - MER69 DNA AcHobo -2136 390 133 450 120 19 9 chr1 74146232 74146340 -168518013 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 371 293 9 9 chr1 74146347 74146453 -168517900 - MER69 DNA AcHobo -1120 106 1 2320 100 7 0 chr1 74147689 74147998 -168516355 - AluSx SINE Alu -1 311 1 566 288 102 20 chr1 74150234 74150529 -168513824 + MLT1I LTR MaLR 89 407 -2 189 0 0 0 chr1 74150937 74150958 -168513395 + (A)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr1 74151073 74151106 -168513247 + AT_rich Low_complexity Low_complexity 1 33 0 229 298 89 48 chr1 74151227 74151395 -168512958 + MIR SINE MIR 32 206 -56 1760 198 0 10 chr1 74152652 74152965 -168511388 - AluJo SINE Alu -2 310 1 409 377 8 8 chr1 74153374 74153504 -168510849 - MER91A DNA MER1_type -66 130 1 1321 186 34 15 chr1 74154080 74154344 -168510009 + AluJb SINE Alu 34 302 -10 590 60 0 12 chr1 74154374 74154458 -168509895 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 188 33 0 33 chr1 74154957 74154987 -168509366 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2131 162 16 8 chr1 74155103 74155474 -168508879 - MLT1B LTR MaLR -2 388 15 23 78 0 0 chr1 74155527 74155578 -168508775 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr1 74155710 74155732 -168508621 + AT_rich Low_complexity Low_complexity 1 22 0 718 217 56 6 chr1 74156127 74156307 -168508046 - MER5A DNA MER1_type 0 189 1 1715 84 5 0 chr1 74156752 74156967 -168507386 + AluSp SINE Alu 83 298 -15 25 0 0 0 chr1 74158055 74158080 -168506273 + AT_rich Low_complexity Low_complexity 1 25 0 251 339 138 0 chr1 74160639 74160769 -168503584 + MIR SINE MIR 67 214 -48 2118 53 0 0 chr1 74161394 74161658 -168502695 - L1PA5 LINE L1 0 6154 5891 212 259 17 35 chr1 74162328 74162386 -168501967 - L3 LINE CR1 -2 1575 1519 219 88 0 0 chr1 74163248 74163282 -168501071 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2645 133 14 23 chr1 74164735 74165172 -168499181 - Tigger2a DNA MER2_type -1 433 1 1327 150 53 0 chr1 74165329 74165575 -168498778 - L1MA5A LINE L1 0 6297 6039 396 0 0 0 chr1 74165811 74165855 -168498498 + (CA)n Simple_repeat Simple_repeat 2 45 0 43281 29 21 1 chr1 74166022 74172054 -168492299 + L1PA2 LINE L1 1 6155 0 510 257 34 0 chr1 74172245 74172393 -168491960 - MIR SINE MIR -12 250 98 999 157 0 13 chr1 74172578 74172737 -168491616 + FAM SINE Alu 1 157 -18 312 244 89 0 chr1 74173029 74173119 -168491234 - MIR SINE MIR -8 254 157 3297 223 40 12 chr1 74173126 74173854 -168490499 - L1MB7 LINE L1 -12 6172 5383 1950 106 8 0 chr1 74173854 74174119 -168490234 - AluSx SINE Alu -8 304 38 3297 223 40 12 chr1 74174119 74174708 -168489645 - L1MB7 LINE L1 -801 5383 4812 360 308 123 0 chr1 74174711 74174841 -168489512 - MIR SINE MIR -109 153 8 209 89 44 22 chr1 74174954 74174999 -168489354 + (TA)n Simple_repeat Simple_repeat 1 46 0 2477 65 0 0 chr1 74176152 74176460 -168487893 + AluY SINE Alu 1 308 -3 250 206 43 11 chr1 74176618 74176710 -168487643 + (TA)n Simple_repeat Simple_repeat 1 95 0 305 298 48 8 chr1 74176710 74176834 -168487519 + L1MC4 LINE L1 6575 6703 -1339 246 62 0 0 chr1 74176843 74176875 -168487478 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 111 0 0 chr1 74178744 74178771 -168485582 + (CAT)n Simple_repeat Simple_repeat 1 27 0 351 284 130 30 chr1 74179153 74179322 -168485031 + L2 LINE L2 3123 3308 -5 2429 89 0 0 chr1 74179486 74179788 -168484565 - AluSg SINE Alu -8 302 1 32 43 0 0 chr1 74181090 74181136 -168483217 + AT_rich Low_complexity Low_complexity 1 46 0 222 272 0 48 chr1 74181479 74181582 -168482771 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr1 74181645 74181668 -168482685 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 74182061 74182089 -168482264 + AT_rich Low_complexity Low_complexity 1 28 0 28 107 0 0 chr1 74183072 74183184 -168481169 + AT_rich Low_complexity Low_complexity 1 112 0 995 286 34 16 chr1 74183707 74184029 -168480324 + MER93b LTR ERV1 29 356 -17 1196 116 0 21 chr1 74184030 74184219 -168480134 + L1PB1 LINE L1 5964 6148 -3 37 23 0 0 chr1 74184222 74184266 -168480087 + AT_rich Low_complexity Low_complexity 1 44 0 252 79 0 0 chr1 74184473 74184511 -168479842 + MER57A LTR ERV1 366 403 0 4535 141 12 3 chr1 74185253 74185990 -168478363 + L1PA16 LINE L1 5414 6157 -9 21 36 0 0 chr1 74186685 74186713 -168477640 + AT_rich Low_complexity Low_complexity 1 28 0 320 343 79 7 chr1 74187963 74188103 -168476250 - L2 LINE L2 -1 3271 3122 298 336 35 63 chr1 74188214 74188395 -168475958 - MIR SINE MIR -63 145 3 1712 200 0 0 chr1 74188516 74188821 -168475532 - AluJb SINE Alu -7 305 1 21 36 0 0 chr1 74189101 74189129 -168475224 + AT_rich Low_complexity Low_complexity 1 28 0 356 349 46 0 chr1 74189134 74189286 -168475067 + MIR SINE MIR 3 161 -101 191 427 0 11 chr1 74189408 74189497 -168474856 - MIR SINE MIR -77 131 44 1548 245 45 47 chr1 74189865 74190371 -168473982 - MLT1D LTR MaLR 0 505 1 284 172 0 16 chr1 74190622 74190686 -168473667 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 30 0 0 0 chr1 74190922 74190952 -168473401 + AT_rich Low_complexity Low_complexity 1 30 0 2134 102 3 0 chr1 74190952 74191237 -168473116 - AluSx SINE Alu -26 286 1 188 233 136 48 chr1 74192103 74192206 -168472147 - L3 LINE CR1 -694 883 772 213 65 0 0 chr1 74192578 74192609 -168471744 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 25 0 0 0 chr1 74193304 74193329 -168471024 + AT_rich Low_complexity Low_complexity 1 25 0 211 273 76 30 chr1 74193450 74193516 -168470837 - MIR SINE MIR -161 101 33 25 31 0 0 chr1 74194053 74194085 -168470268 + AT_rich Low_complexity Low_complexity 1 32 0 1984 113 0 11 chr1 74194293 74194576 -168469777 + AluSq SINE Alu 1 280 -33 243 61 0 0 chr1 74194576 74194609 -168469744 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2298 35 42 7 chr1 74195334 74195621 -168468732 + AluY SINE Alu 4 300 -11 2591 58 0 0 chr1 74195759 74196069 -168468284 + AluY SINE Alu 2 311 0 262 374 25 37 chr1 74198344 74198507 -168465846 + L2 LINE L2 3095 3255 -17 23 33 0 0 chr1 74198953 74198983 -168465370 + AT_rich Low_complexity Low_complexity 1 30 0 1751 116 14 205 chr1 74199185 74199527 -168464826 + Tigger2 DNA MER2_type 1 406 -2312 279 0 0 0 chr1 74199527 74199558 -168464795 + (TA)n Simple_repeat Simple_repeat 1 31 0 1751 116 14 205 chr1 74199558 74199761 -168464592 + Tigger2 DNA MER2_type 406 2718 0 766 296 43 56 chr1 74199761 74200246 -168464107 - LTR33A LTR ERVL -44 479 1 280 308 48 10 chr1 74200907 74201011 -168463342 - L2 LINE L2 -6 3307 3200 317 211 157 103 chr1 74201062 74201266 -168463087 + MER20 DNA MER1_type 1 215 -4 1245 204 46 77 chr1 74201333 74201721 -168462632 - MLT1D LTR MaLR 0 505 130 1203 150 162 36 chr1 74201727 74201980 -168462373 - AluJb SINE Alu -7 305 21 316 241 12 24 chr1 74202013 74202096 -168462257 - MLT1D LTR MaLR -423 82 1 224 329 13 0 chr1 74202307 74202383 -168461970 + L2 LINE L2 2376 2452 -862 198 0 0 0 chr1 74202903 74202925 -168461428 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 256 245 0 19 chr1 74203048 74203101 -168461252 + Charlie4 DNA MER1_type 1892 1943 -18 1312 183 3 62 chr1 74205521 74205852 -168458501 + AluJo SINE Alu 1 313 0 231 167 0 0 chr1 74205852 74205894 -168458459 + (CA)n Simple_repeat Simple_repeat 1 42 0 249 311 0 0 chr1 74205919 74206009 -168458344 - L1MC4 LINE L1 -1339 6703 6614 285 210 0 0 chr1 74206015 74206077 -168458276 + (TA)n Simple_repeat Simple_repeat 2 63 0 248 259 47 0 chr1 74206078 74206163 -168458190 + L1MC4 LINE L1 6615 6703 -1339 * 254 303 0 0 chr1 74206106 74206195 -168458158 - L1MC4 LINE L1 -1340 6702 6614 253 311 0 0 chr1 74206207 74206297 -168458056 - L1MC4 LINE L1 -1339 6703 6614 * 261 303 0 0 chr1 74206290 74206379 -168457974 + L1MC4 LINE L1 6615 6703 -1339 229 326 0 0 chr1 74206301 74206390 -168457963 - L1MC4 LINE L1 -1339 6703 6615 * 369 197 0 0 chr1 74206391 74206467 -168457886 + (TA)n Simple_repeat Simple_repeat 2 77 0 268 250 0 22 chr1 74206467 74206559 -168457794 + L1MC4 LINE L1 6614 6703 -1339 222 150 0 0 chr1 74206563 74206603 -168457750 + (TA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr1 74208166 74208191 -168456162 + AT_rich Low_complexity Low_complexity 1 25 0 1226 307 31 14 chr1 74208711 74209131 -168455222 - LTR16A LTR ERVL -9 441 15 1865 208 39 8 chr1 74209410 74209794 -168454559 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr1 74210015 74210037 -168454316 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 74210219 74210262 -168454091 + AT_rich Low_complexity Low_complexity 1 43 0 181 121 0 52 chr1 74210299 74210357 -168453996 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 265 373 93 6 chr1 74210358 74210519 -168453834 - MIR3 SINE MIR -27 181 7 180 111 0 0 chr1 74212845 74212872 -168451481 + (TG)n Simple_repeat Simple_repeat 2 28 0 296 82 0 20 chr1 74213543 74213592 -168450761 + (TG)n Simple_repeat Simple_repeat 2 49 0 1837 156 0 0 chr1 74213807 74214124 -168450229 - AluSx SINE Alu 0 317 1 183 80 0 0 chr1 74216392 74216417 -168447936 + (CA)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr1 74216437 74216457 -168447896 + (T)n Simple_repeat Simple_repeat 1 20 0 858 304 82 19 chr1 74216863 74217263 -168447090 + L2 LINE L2 2608 3033 -280 322 245 152 53 chr1 74217310 74217461 -168446892 + L2 LINE L2 3148 3313 0 586 255 27 0 chr1 74217838 74217987 -168446366 - MIR SINE MIR -24 238 86 261 0 0 0 chr1 74219510 74219539 -168444814 + (TA)n Simple_repeat Simple_repeat 2 30 0 2770 0 0 3 chr1 74219553 74219858 -168444495 - AluYa5 SINE Alu -7 304 1 834 117 0 17 chr1 74219868 74219988 -168444365 - FRAM SINE Alu -24 152 35 219 114 0 0 chr1 74220019 74220054 -168444299 + (TA)n Simple_repeat Simple_repeat 2 36 0 241 152 0 0 chr1 74220054 74220100 -168444253 + LTR66 LTR ERVL 394 439 -171 241 152 0 0 chr1 74220114 74220160 -168444193 + LTR66 LTR ERVL 394 439 -171 183 229 9 19 chr1 74220161 74220266 -168444087 + (TA)n Simple_repeat Simple_repeat 1 104 0 222 273 7 14 chr1 74220279 74220422 -168443931 + (TA)n Simple_repeat Simple_repeat 1 142 0 274 276 37 60 chr1 74220811 74220945 -168443408 - MIR SINE MIR -1 261 131 614 333 49 0 chr1 74222195 74222399 -168441954 + MIR SINE MIR 49 262 0 1102 137 4 122 chr1 74223102 74223357 -168440996 - AluJo SINE Alu -13 299 75 1066 247 94 19 chr1 74223368 74223891 -168440462 - Charlie2 DNA MER1_type -16 2846 2285 1293 169 48 40 chr1 74223894 74224143 -168440210 + AluJb SINE Alu 31 281 -31 402 21 0 0 chr1 74224143 74224190 -168440163 + (CA)n Simple_repeat Simple_repeat 1 47 0 201 134 30 15 chr1 74224191 74224258 -168440095 + (TA)n Simple_repeat Simple_repeat 1 68 0 565 291 40 34 chr1 74224340 74224636 -168439717 - Charlie2 DNA MER1_type -675 2187 1890 526 300 120 28 chr1 74224658 74224941 -168439412 - Charlie2 DNA MER1_type -2539 323 15 29 0 0 0 chr1 74225392 74225421 -168438932 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr1 74225555 74225577 -168438776 + (GA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 74225673 74225695 -168438658 + AT_rich Low_complexity Low_complexity 1 22 0 254 267 80 67 chr1 74226111 74226261 -168438092 + MIR SINE MIR 30 181 -81 238 322 41 101 chr1 74226298 74226565 -168437788 + L2 LINE L2 3014 3264 -8 23 0 0 0 chr1 74228638 74228661 -168435692 + AT_rich Low_complexity Low_complexity 1 23 0 12719 151 61 12 chr1 74228746 74231050 -168433303 + Tigger1 DNA MER2_type 1 2417 -1 244 297 34 61 chr1 74231489 74231637 -168432716 - MIR SINE MIR -31 231 88 245 261 0 31 chr1 74232284 74232349 -168432004 + L3 LINE CR1 916 978 -599 336 276 0 0 chr1 74233274 74233350 -168431003 + L2 LINE L2 3197 3272 0 237 333 111 11 chr1 74233859 74233949 -168430404 + MIR SINE MIR 43 141 -67 319 269 19 9 chr1 74234053 74234161 -168430192 + MER103 DNA DNA 47 155 -11 21 0 0 0 chr1 74235585 74235606 -168428747 + AT_rich Low_complexity Low_complexity 1 21 0 1993 98 34 24 chr1 74235732 74236027 -168428326 + AluSg SINE Alu 1 298 -12 181 320 13 13 chr1 74238362 74238440 -168425913 + L3 LINE CR1 632 709 -868 326 369 44 0 chr1 74238696 74238856 -168425497 + MIR SINE MIR 35 201 -61 391 307 96 12 chr1 74238863 74239029 -168425324 + MIR SINE MIR 18 197 -65 225 207 0 35 chr1 74239903 74239961 -168424392 - MER5B DNA MER1_type 0 178 123 316 250 119 30 chr1 74240447 74240650 -168423703 - L1MC/D LINE L1 -469 5652 5536 21 0 0 0 chr1 74240666 74240687 -168423666 + AT_rich Low_complexity Low_complexity 1 21 0 1322 267 97 93 chr1 74241208 74241788 -168422565 + MLT1G LTR MaLR 1 577 -13 334 304 28 33 chr1 74241982 74242163 -168422190 + MLT1L LTR MaLR 108 287 -328 357 267 133 0 chr1 74245473 74245578 -168418775 - L2 LINE L2 -1 3312 3194 2494 78 0 0 chr1 74246065 74246373 -168417980 - AluSq SINE Alu -5 308 1 293 335 73 30 chr1 74247111 74247461 -168416892 - L2 LINE L2 -181 3091 2689 1648 154 25 14 chr1 74247480 74247760 -168416593 + AluSx SINE Alu 14 296 -16 963 208 108 94 chr1 74247977 74248414 -168415939 + MLT1C LTR MaLR 17 459 -8 419 293 43 37 chr1 74248447 74248611 -168415742 + MIR SINE MIR 92 256 -6 1913 44 0 0 chr1 74250173 74250402 -168413951 + AluY SINE Alu 79 307 -4 498 245 6 57 chr1 74250402 74250561 -168413792 + MLT1C LTR MaLR 315 465 -2 22 56 0 0 chr1 74250665 74250701 -168413652 + AT_rich Low_complexity Low_complexity 1 36 0 232 141 47 16 chr1 74250931 74250995 -168413358 + T-rich Low_complexity Low_complexity 3 68 0 22 80 0 0 chr1 74251535 74251585 -168412768 + AT_rich Low_complexity Low_complexity 1 50 0 283 338 75 30 chr1 74252757 74252890 -168411463 + MIR3 SINE MIR 46 184 -24 1938 130 0 11 chr1 74254101 74254435 -168409918 + AluSx SINE Alu 1 331 0 264 314 0 0 chr1 74254807 74254912 -168409441 + A-rich Low_complexity Low_complexity 1 105 0 5439 119 12 10 chr1 74255576 74256438 -168407915 + L1PA13 LINE L1 5301 6163 0 295 332 58 27 chr1 74256631 74256923 -168407430 + HAL1 LINE L1 63 363 -2144 484 225 183 6 chr1 74257146 74257315 -168407038 + HAL1 LINE L1 2309 2507 0 229 268 71 0 chr1 74257421 74257477 -168406876 - L2 LINE L2 -8 3305 3246 196 345 0 0 chr1 74259642 74259700 -168404653 + L2 LINE L2 3205 3262 -10 21 82 0 0 chr1 74260101 74260150 -168404203 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr1 74261334 74261364 -168402989 + AT_rich Low_complexity Low_complexity 1 30 0 813 126 25 0 chr1 74261366 74261485 -168402868 - AluJb SINE Alu -190 122 1 798 272 65 8 chr1 74261941 74262187 -168402166 - MIR SINE MIR 0 262 3 435 328 198 0 chr1 74262434 74262626 -168401727 - MIR SINE MIR -30 232 3 2476 15 0 0 chr1 74265354 74265628 -168398725 + AluYb8 SINE Alu 39 312 -6 225 0 0 0 chr1 74265982 74266007 -168398346 + (A)n Simple_repeat Simple_repeat 1 25 0 203 184 0 0 chr1 74267938 74267976 -168396377 + (TA)n Simple_repeat Simple_repeat 2 39 0 184 284 149 0 chr1 74268496 74268570 -168395783 + L2 LINE L2 2901 2985 -287 1879 117 7 18 chr1 74268839 74269149 -168395204 - AluSx SINE Alu 0 309 3 21 36 0 0 chr1 74269323 74269351 -168395002 + AT_rich Low_complexity Low_complexity 1 28 0 1197 227 33 3 chr1 74269473 74269777 -168394576 - MER33 DNA MER1_type -2 322 10 23 0 0 0 chr1 74270604 74270627 -168393726 + AT_rich Low_complexity Low_complexity 1 23 0 347 361 93 6 chr1 74270723 74270906 -168393447 - MIR SINE MIR -50 212 14 2384 77 0 0 chr1 74271304 74271615 -168392738 + AluY SINE Alu 1 311 0 180 0 0 0 chr1 74272054 74272074 -168392279 + (A)n Simple_repeat Simple_repeat 1 20 0 206 350 113 41 chr1 74273430 74273721 -168390632 + L2 LINE L2 1275 1586 -1728 214 340 78 10 chr1 74274638 74274741 -168389612 + L2 LINE L2 3197 3306 -7 463 293 61 0 chr1 74275195 74275359 -168388994 + MIR SINE MIR 86 259 -3 266 212 33 54 chr1 74275753 74275937 -168388416 + (TA)n Simple_repeat Simple_repeat 1 180 0 217 305 0 0 chr1 74276024 74276083 -168388270 + L2 LINE L2 3255 3313 0 462 36 0 0 chr1 74276690 74276746 -168387607 + (TA)n Simple_repeat Simple_repeat 2 57 0 22 35 0 0 chr1 74277569 74277598 -168386755 + AT_rich Low_complexity Low_complexity 1 29 0 3288 140 9 17 chr1 74277882 74278411 -168385942 + MER61E LTR ERV1 1 525 -44 290 302 0 0 chr1 74278429 74278492 -168385861 + MER5A DNA MER1_type 43 105 -84 24 53 0 0 chr1 74279365 74279403 -168384950 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 74280893 74280917 -168383436 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr1 74281202 74281235 -168383118 + AT_rich Low_complexity Low_complexity 1 33 0 197 250 13 0 chr1 74281240 74281316 -168383037 + (TA)n Simple_repeat Simple_repeat 2 78 0 1525 156 91 0 chr1 74281365 74281640 -168382713 - AluSx SINE Alu -12 300 1 23 0 0 0 chr1 74281753 74281776 -168382577 + AT_rich Low_complexity Low_complexity 1 23 0 293 256 61 0 chr1 74285222 74285304 -168379049 - MIR SINE MIR -106 156 70 447 302 57 0 chr1 74285510 74285669 -168378684 + MIR SINE MIR 94 261 -1 188 65 0 32 chr1 74286056 74286087 -168378266 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr1 74286546 74286567 -168377786 + AT_rich Low_complexity Low_complexity 1 21 0 254 339 14 124 chr1 74288739 74288957 -168375396 - L2 LINE L2 -86 3186 2993 1448 197 3 27 chr1 74289408 74289708 -168374645 + MER101B LTR ERV1 1 293 -277 638 306 13 34 chr1 74289686 74289921 -168374432 + MER101 LTR ERV1 216 445 -29 * 312 296 45 0 chr1 74289952 74290040 -168374313 - L1MC4 LINE L1 -1338 6704 6613 1820 199 127 32 chr1 74290066 74290603 -168373750 - LTR48B LTR ERV1 0 644 57 255 31 0 0 chr1 74291117 74291149 -168373204 + (A)n Simple_repeat Simple_repeat 1 32 0 255 31 0 0 chr1 74291735 74291767 -168372586 + (A)n Simple_repeat Simple_repeat 1 32 0 304 242 11 21 chr1 74291815 74291910 -168372443 - MER103 DNA DNA -55 111 18 227 314 203 24 chr1 74291971 74292178 -168372175 - MIR SINE MIR -14 248 5 665 259 0 0 chr1 74293301 74293482 -168370871 + AluJb SINE Alu 137 317 0 810 68 0 0 chr1 74293492 74293595 -168370758 + LTR14B LTR ERVK 11 113 -495 453 335 52 5 chr1 74294042 74294233 -168370120 - MIR SINE MIR -55 207 8 211 122 41 0 chr1 74294853 74294902 -168369451 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 261 0 0 0 chr1 74294904 74294933 -168369420 + (TG)n Simple_repeat Simple_repeat 2 30 0 230 310 168 26 chr1 74295161 74295274 -168369079 + L2 LINE L2 3185 3313 0 454 271 8 0 chr1 74295740 74295862 -168368491 + L2 LINE L2 3190 3312 -1 502 275 7 14 chr1 74295980 74296118 -168368235 - L2 LINE L2 -12 3301 3165 191 315 0 19 chr1 74296249 74296303 -168368050 + MER5B DNA MER1_type 106 158 -20 627 320 109 34 chr1 74296429 74296932 -168367421 - L2 LINE L2 -352 2962 2422 239 298 97 24 chr1 74297662 74297786 -168366567 - MIR SINE MIR -12 250 118 338 305 92 49 chr1 74298260 74299629 -168364724 + L1M4 LINE L1 2179 3488 -2658 2477 65 0 0 chr1 74299629 74299939 -168364414 + AluY SINE Alu 1 310 -1 338 305 92 49 chr1 74299939 74300036 -168364317 + L1M4 LINE L1 3488 3579 -2567 279 0 0 0 chr1 74300036 74300067 -168364286 + (TA)n Simple_repeat Simple_repeat 1 31 0 338 305 92 49 chr1 74300067 74300093 -168364260 + L1M4 LINE L1 3579 3736 -2410 341 306 40 52 chr1 74300142 74300315 -168364038 + L1M4 LINE L1 3853 4023 -2123 308 356 80 10 chr1 74300353 74300642 -168363711 + L1M4 LINE L1 4000 4308 -1838 21 36 0 0 chr1 74302212 74302240 -168362113 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 74303201 74303225 -168361128 + AT_rich Low_complexity Low_complexity 1 24 0 2814 10 0 0 chr1 74303593 74303903 -168360450 + AluYa5 SINE Alu 1 310 -1 21 57 0 0 chr1 74304209 74304244 -168360109 + AT_rich Low_complexity Low_complexity 1 35 0 195 345 68 41 chr1 74304317 74304537 -168359816 + L2 LINE L2 1798 2023 -1291 185 0 40 0 chr1 74304663 74304688 -168359665 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2147 93 0 3 chr1 74304692 74304982 -168359371 - AluY SINE Alu -22 289 1 42 0 0 0 chr1 74305293 74305335 -168359018 + AT_rich Low_complexity Low_complexity 1 42 0 272 302 35 43 chr1 74305432 74305548 -168358805 + L2 LINE L2 2188 2302 -1012 * 327 270 157 19 chr1 74305543 74305702 -168358651 + MER5A DNA MER1_type 9 189 0 246 355 106 82 chr1 74306269 74306694 -168357659 + L2 LINE L2 2836 3270 -2 846 145 8 8 chr1 74306955 74307086 -168357267 + FLAM_C SINE Alu 1 131 -2 1058 127 0 66 chr1 74307951 74308132 -168356221 - AluSg/x SINE Alu -11 301 133 727 119 0 90 chr1 74308725 74308859 -168355494 - AluSq SINE Alu -59 254 133 214 273 42 84 chr1 74310079 74310222 -168354131 - MIR3 SINE MIR -2 206 70 202 293 211 23 chr1 74310233 74310366 -168353987 + L3 LINE CR1 1309 1466 -111 359 280 85 48 chr1 74310397 74310586 -168353767 - MIR SINE MIR -44 218 23 216 223 96 21 chr1 74310621 74310715 -168353638 + L3 LINE CR1 1470 1570 -7 645 316 23 0 chr1 74311216 74311472 -168352881 + MIR SINE MIR 1 262 0 1407 225 59 83 chr1 74313240 74313867 -168350486 + LTR9 LTR ERV1 1 612 0 190 339 115 23 chr1 74313900 74314030 -168350323 - MIR SINE MIR -96 166 25 355 332 47 16 chr1 74314211 74314405 -168349948 - MIR SINE MIR -29 233 32 2343 88 0 0 chr1 74314858 74315155 -168349198 + AluSx SINE Alu 1 297 -15 549 286 168 5 chr1 74315780 74315983 -168348370 - MIR SINE MIR -7 255 20 204 445 0 19 chr1 74317488 74317697 -168346656 - L2 LINE L2 -234 3038 2834 234 0 0 0 chr1 74319064 74319090 -168345263 + (A)n Simple_repeat Simple_repeat 1 26 0 227 155 63 7 chr1 74320277 74320419 -168343934 + (TA)n Simple_repeat Simple_repeat 2 151 0 260 213 32 11 chr1 74320432 74320526 -168343827 + (TA)n Simple_repeat Simple_repeat 2 97 0 274 308 45 19 chr1 74321700 74321856 -168342497 + LTR33A LTR ERVL 364 523 0 27 0 0 0 chr1 74321887 74321914 -168342439 + AT_rich Low_complexity Low_complexity 1 27 0 272 240 0 40 chr1 74322612 74322687 -168341666 + MIR SINE MIR 191 262 0 2134 140 22 25 chr1 74323849 74324213 -168340140 + THE1B LTR MaLR 2 364 0 23 0 0 0 chr1 74324835 74324858 -168339495 + AT_rich Low_complexity Low_complexity 1 23 0 29 70 0 0 chr1 74325913 74325970 -168338383 + AT_rich Low_complexity Low_complexity 1 57 0 248 287 0 69 chr1 74326748 74326835 -168337518 - MIR3 SINE MIR -11 197 117 2591 29 7 3 chr1 74326912 74327221 -168337132 - AluY SINE Alu -1 310 1 235 263 61 71 chr1 74327782 74327881 -168336472 - L2 LINE L2 -208 3105 3008 1120 163 27 81 chr1 74327882 74328140 -168336213 + AluJo SINE Alu 45 288 -24 183 424 76 0 chr1 74328489 74328607 -168335746 + L2 LINE L2 3133 3259 -13 25 65 0 0 chr1 74328944 74328990 -168335363 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr1 74329103 74329139 -168335214 + AT_rich Low_complexity Low_complexity 1 36 0 1438 273 46 0 chr1 74329425 74329773 -168334580 + MLT1F LTR MaLR 1 364 -178 304 368 44 18 chr1 74330329 74330669 -168333684 + Charlie4 DNA MER1_type 558 906 -1055 242 360 42 88 chr1 74331723 74331984 -168332369 + L2 LINE L2 3024 3272 0 23 54 0 0 chr1 74332653 74332690 -168331663 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr1 74333287 74333309 -168331044 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 74333892 74333935 -168330418 + AT_rich Low_complexity Low_complexity 1 43 0 33 0 0 0 chr1 74334578 74334611 -168329742 + AT_rich Low_complexity Low_complexity 1 33 0 309 352 9 9 chr1 74334662 74334792 -168329561 + MIR SINE MIR 25 153 -66 1447 202 85 35 chr1 74336430 74336796 -168327557 - MLT1B LTR MaLR 0 390 7 22 56 0 0 chr1 74338569 74338605 -168325748 + AT_rich Low_complexity Low_complexity 1 36 0 290 348 104 0 chr1 74340270 74340385 -168323968 + L2 LINE L2 3141 3267 -5 181 274 137 0 chr1 74341253 74341304 -168323049 + L2 LINE L2 3168 3225 -47 23 33 0 0 chr1 74341950 74341980 -168322373 + AT_rich Low_complexity Low_complexity 1 30 0 205 218 26 115 chr1 74342035 74342113 -168322240 - MIR3 SINE MIR -54 154 84 314 145 66 26 chr1 74342116 74342192 -168322161 - MADE1 DNA Mariner 0 80 2 409 96 82 0 chr1 74342236 74342309 -168322044 - MADE1 DNA Mariner 0 80 2 313 244 48 86 chr1 74343570 74343762 -168320591 - MIR SINE MIR -50 212 23 180 111 0 0 chr1 74344262 74344289 -168320064 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 407 358 18 22 chr1 74344542 74344771 -168319582 - MIR SINE MIR -20 242 15 540 259 14 14 chr1 74344956 74345099 -168319254 - MIR SINE MIR -113 149 7 1623 198 45 13 chr1 74345260 74345638 -168318715 + MLT1B LTR MaLR 1 390 0 2091 172 98 2 chr1 74346893 74347301 -168317052 + LTR45B LTR ERV1 3 449 -40 1623 174 7 24 chr1 74347923 74348060 -168316293 + AluJb SINE Alu 1 139 -173 198 71 0 0 chr1 74348060 74348088 -168316265 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1623 174 7 24 chr1 74348088 74348248 -168316105 + AluJb SINE Alu 139 293 -19 32 67 0 0 chr1 74348883 74348943 -168315410 + AT_rich Low_complexity Low_complexity 1 60 0 484 275 81 28 chr1 74349903 74350114 -168314239 + L1MEd LINE L1 863 1084 -5035 215 370 65 11 chr1 74351068 74351160 -168313193 + L2 LINE L2 3141 3237 -35 1093 317 73 10 chr1 74351774 74352171 -168312182 - LTR16A LTR ERVL -13 437 16 23 33 0 0 chr1 74352359 74352389 -168311964 + AT_rich Low_complexity Low_complexity 1 30 0 554 195 79 18 chr1 74352813 74352977 -168311376 + MER104 DNA Tc2 6 179 -1 23 0 0 0 chr1 74353469 74353492 -168310861 + AT_rich Low_complexity Low_complexity 1 23 0 229 328 112 0 chr1 74354719 74354835 -168309518 + MIR SINE MIR 80 208 -54 1757 199 46 6 chr1 74354935 74355286 -168309067 + MLT1A1 LTR MaLR 1 365 0 342 215 83 49 chr1 74355306 74355450 -168308903 + MLT2B2 LTR ERVL 317 465 -50 201 147 0 0 chr1 74355456 74355490 -168308863 + (TG)n Simple_repeat Simple_repeat 2 35 0 245 255 0 0 chr1 74355490 74355537 -168308816 + (CA)n Simple_repeat Simple_repeat 2 48 0 325 154 0 0 chr1 74355537 74355589 -168308764 + MLT2C2 LTR ERVL 413 464 0 975 128 0 13 chr1 74355687 74355836 -168308517 - AluSc SINE Alu -7 302 156 227 225 0 0 chr1 74355981 74356021 -168308332 + MLT1J LTR MaLR 468 507 -4 1294 206 64 3 chr1 74356155 74356274 -168308079 + AluJb SINE Alu 2 112 -200 396 0 0 0 chr1 74356274 74356318 -168308035 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1294 206 64 3 chr1 74356318 74356480 -168307873 + AluJb SINE Alu 112 300 -12 241 164 15 30 chr1 74357236 74357289 -168307064 + (TA)n Simple_repeat Simple_repeat 2 55 -12 2240 106 3 3 chr1 74357289 74357592 -168306761 - AluSq SINE Alu -10 303 1 241 164 15 30 chr1 74357592 74357605 -168306748 + (TA)n Simple_repeat Simple_repeat 55 67 0 268 24 49 0 chr1 74357739 74357780 -168306573 + (TA)n Simple_repeat Simple_repeat 1 43 0 29 47 0 0 chr1 74358491 74358534 -168305819 + AT_rich Low_complexity Low_complexity 1 43 0 424 283 14 7 chr1 74359338 74359476 -168304877 + MIR SINE MIR 111 249 -13 276 30 0 0 chr1 74359572 74359605 -168304748 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 433 301 40 68 chr1 74360148 74360324 -168304029 + L2 LINE L2 3102 3272 0 358 350 8 8 chr1 74360336 74360459 -168303894 - MIR SINE MIR -66 142 20 192 111 0 0 chr1 74361345 74361381 -168302972 + (A)n Simple_repeat Simple_repeat 1 36 0 354 237 0 0 chr1 74361875 74361993 -168302360 + CT-rich Low_complexity Low_complexity 4 121 0 869 244 0 0 chr1 74362004 74362176 -168302177 - FAM SINE Alu -3 172 1 1764 223 30 20 chr1 74362375 74362814 -168301539 - L1MC1 LINE L1 0 6333 5891 641 275 64 61 chr1 74362977 74363319 -168301034 + L2 LINE L2 2971 3313 0 221 250 0 0 chr1 74363858 74363906 -168300447 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 21 0 0 0 chr1 74364276 74364297 -168300056 + AT_rich Low_complexity Low_complexity 1 21 0 2221 109 3 0 chr1 74364341 74364643 -168299710 + AluSx SINE Alu 1 303 -9 33 66 0 0 chr1 74365423 74365484 -168298869 + AT_rich Low_complexity Low_complexity 1 61 0 2023 99 3 46 chr1 74365790 74366093 -168298260 + AluSg SINE Alu 1 290 -20 189 94 0 0 chr1 74366258 74366290 -168298063 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 690 253 6 44 chr1 74366537 74366719 -168297634 + MER5A DNA MER1_type 14 188 -1 210 216 227 31 chr1 74366801 74366898 -168297455 - MIR SINE MIR -110 152 37 894 175 6 29 chr1 74367131 74367302 -168297051 - AluSg/x SINE Alu -9 303 137 283 200 31 0 chr1 74367411 74367476 -168296877 - MER5A DNA MER1_type -86 103 37 602 266 138 5 chr1 74367541 74367744 -168296609 + MIR SINE MIR 31 260 -2 23 54 0 0 chr1 74368669 74368706 -168295647 + AT_rich Low_complexity Low_complexity 1 37 0 297 346 58 19 chr1 74369070 74369226 -168295127 + MIR3 SINE MIR 36 197 -11 412 598 6 0 chr1 74369676 74369855 -168294498 + polypyrimidine Low_complexity Low_complexity 1 180 0 1458 202 108 17 chr1 74370137 74370488 -168293865 - MLT1B LTR MaLR -7 383 1 1631 191 3 7 chr1 74371067 74371365 -168292988 - AluJb SINE Alu -15 297 1 1975 161 0 0 chr1 74371464 74371769 -168292584 + AluSc SINE Alu 1 305 -4 222 278 67 44 chr1 74372732 74372822 -168291531 - L2 LINE L2 -254 3018 2927 267 0 0 29 chr1 74375067 74375102 -168289251 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 1948 99 40 0 chr1 74375102 74375255 -168289098 - AluY SINE Alu -27 284 114 224 30 30 0 chr1 74375255 74375288 -168289065 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1948 99 40 0 chr1 74375288 74375407 -168288946 - AluY SINE Alu -197 114 1 557 298 115 14 chr1 74375562 74375770 -168288583 + MIR SINE MIR 4 232 -30 1393 272 110 45 chr1 74375908 74376636 -168287717 + MER110-int LTR ERV1 3869 4643 -4 1340 233 143 14 chr1 74376764 74377189 -168287164 + MER110 LTR ERV1 6 485 -6 31 68 0 0 chr1 74377453 74377512 -168286841 + AT_rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr1 74377549 74377578 -168286775 + AT_rich Low_complexity Low_complexity 1 29 0 31 68 0 0 chr1 74378160 74378219 -168286134 + AT_rich Low_complexity Low_complexity 1 59 0 222 171 0 0 chr1 74378311 74378352 -168286001 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 1477 181 31 52 chr1 74379171 74379552 -168284801 - MLT1A2 LTR MaLR 0 374 2 21 36 0 0 chr1 74382370 74382398 -168281955 + AT_rich Low_complexity Low_complexity 1 28 0 2006 236 22 16 chr1 74382577 74383077 -168281276 + MLT1D LTR MaLR 3 505 0 22 56 0 0 chr1 74383225 74383261 -168281092 + AT_rich Low_complexity Low_complexity 1 36 0 273 298 61 30 chr1 74383558 74383689 -168280664 + L2 LINE L2 2646 2780 -534 589 185 0 25 chr1 74383849 74383968 -168280385 + FLAM_C SINE Alu 5 120 -23 234 0 0 0 chr1 74383971 74383997 -168280356 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr1 74386068 74386091 -168278262 + AT_rich Low_complexity Low_complexity 1 23 0 215 250 0 19 chr1 74386147 74386199 -168278154 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 234 247 0 0 chr1 74386215 74386292 -168278061 + (TA)n Simple_repeat Simple_repeat 1 77 0 26 0 0 0 chr1 74386964 74386990 -168277363 + AT_rich Low_complexity Low_complexity 1 26 0 519 56 0 0 chr1 74388590 74388661 -168275692 + L1HS LINE L1 6085 6155 0 351 179 0 0 chr1 74389490 74389557 -168274796 + (CA)n Simple_repeat Simple_repeat 2 68 0 366 361 0 0 chr1 74389607 74389737 -168274616 + MIR SINE MIR 86 215 -47 26 0 0 0 chr1 74389753 74389779 -168274574 + AT_rich Low_complexity Low_complexity 1 26 0 26 82 0 0 chr1 74391848 74391909 -168272444 + AT_rich Low_complexity Low_complexity 1 61 0 207 69 0 0 chr1 74391937 74391966 -168272387 + (TG)n Simple_repeat Simple_repeat 2 30 0 1503 150 101 101 chr1 74392499 74392865 -168271488 + MLT2D LTR ERVL 1 366 -48 268 31 31 77 chr1 74392870 74392935 -168271418 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 225 0 0 0 chr1 74395714 74395739 -168268614 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 239 336 35 26 chr1 74396643 74396759 -168267594 + MIR SINE MIR 21 137 -125 363 285 57 6 chr1 74397023 74397181 -168267172 + LTR67 LTR ERVL 387 552 -5 203 291 134 35 chr1 74397556 74397728 -168266625 - MIR SINE MIR -10 252 64 868 208 71 47 chr1 74398035 74398247 -168266106 + MER20 DNA MER1_type 2 218 -1 2020 29 0 0 chr1 74398931 74399171 -168265182 - L1PA2 LINE L1 -1 6154 5915 253 209 58 12 chr1 74400933 74401019 -168263334 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 22 0 0 0 chr1 74401998 74402020 -168262333 + AT_rich Low_complexity Low_complexity 1 22 0 218 340 41 0 chr1 74404232 74404329 -168260024 - MIR SINE MIR -77 131 31 366 23 0 0 chr1 74404495 74404538 -168259815 + (TG)n Simple_repeat Simple_repeat 1 43 0 180 179 0 0 chr1 74404540 74404579 -168259774 + GA-rich Low_complexity Low_complexity 2 40 0 1418 264 72 7 chr1 74405030 74405458 -168258895 - LTR40a LTR ERVL 0 519 64 2378 62 0 34 chr1 74405574 74405895 -168258458 + AluY SINE Alu 1 310 -1 25 0 0 0 chr1 74407037 74407062 -168257291 + AT_rich Low_complexity Low_complexity 1 25 0 1788 234 42 30 chr1 74407077 74407628 -168256725 + MLT2B1 LTR ERVL 1 520 0 893 318 29 13 chr1 74408136 74408516 -168255837 + L2 LINE L2 2408 2793 -521 1904 204 25 80 chr1 74408532 74409043 -168255310 + LTR42 LTR ERVL 1 483 -12 226 215 123 0 chr1 74409075 74409140 -168255213 + L2 LINE L2 2819 2891 -381 257 290 131 9 chr1 74409181 74409288 -168255065 + L2 LINE L2 3189 3308 -5 215 211 0 0 chr1 74409289 74409327 -168255026 + polypurine Low_complexity Low_complexity 2 39 0 1878 146 0 7 chr1 74410219 74410529 -168253824 + AluSx SINE Alu 1 308 0 182 36 0 36 chr1 74410884 74410912 -168253441 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 38 66 0 28 chr1 74412164 74412270 -168252083 + AT_rich Low_complexity Low_complexity 1 103 0 2379 66 13 0 chr1 74412607 74412908 -168251445 - AluY SINE Alu -6 305 1 2170 95 3 0 chr1 74413117 74413439 -168250914 - AluSp SINE Alu 0 323 1 1821 288 74 55 chr1 74413571 74414813 -168249540 + L1MEc LINE L1 120 1405 -4991 6362 68 29 1 chr1 74414813 74415867 -168248486 + L1PA7 LINE L1 5077 6154 0 1821 288 74 55 chr1 74415867 74416305 -168248048 + L1MEc LINE L1 1405 1833 -4563 2416 246 59 70 chr1 74416377 74417872 -168246481 + L1MEc LINE L1 2119 3547 -2668 340 262 27 101 chr1 74417873 74418111 -168246242 + L1ME1 LINE L1 5899 6086 -80 291 28 0 0 chr1 74418469 74418505 -168245848 + (TTG)n Simple_repeat Simple_repeat 3 38 0 1174 236 131 14 chr1 74418528 74418879 -168245474 - MSTD LTR MaLR 0 396 5 25 31 0 0 chr1 74419045 74419077 -168245276 + AT_rich Low_complexity Low_complexity 1 32 0 497 16 16 0 chr1 74420769 74420831 -168243522 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 26 30 0 0 chr1 74421796 74421829 -168242524 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr1 74421973 74422007 -168242346 + AT_rich Low_complexity Low_complexity 1 34 0 394 27 27 40 chr1 74422117 74422192 -168242161 + (TA)n Simple_repeat Simple_repeat 2 75 0 184 213 138 50 chr1 74422488 74422568 -168241785 - L2 LINE L2 -1 3312 3226 260 244 205 0 chr1 74424400 74424478 -168239875 + Tigger4(Zombi) DNA MER2_type 1 94 -2637 * 3167 156 20 4 chr1 74424468 74425019 -168239334 + Tigger4(Zombi) DNA MER2_type 2171 2730 -1 25 31 0 0 chr1 74425384 74425416 -168238937 + AT_rich Low_complexity Low_complexity 1 32 0 2442 117 3 0 chr1 74425434 74425786 -168238567 - THE1A LTR MaLR -2 353 1 9664 104 33 4 chr1 74425786 74427281 -168237072 - THE1A-int LTR MaLR 0 1580 1 2618 87 0 6 chr1 74427283 74427638 -168236715 - THE1A LTR MaLR -2 353 1 2149 110 13 0 chr1 74427852 74428161 -168236192 + AluSp SINE Alu 1 313 0 206 245 0 0 chr1 74429234 74429287 -168235066 + A-rich Low_complexity Low_complexity 1 53 0 48 60 0 0 chr1 74429492 74429575 -168234778 + AT_rich Low_complexity Low_complexity 1 83 0 321 234 13 13 chr1 74429821 74429898 -168234455 + L1M4 LINE L1 4077 4153 -1993 271 303 131 32 chr1 74430051 74430650 -168233703 + L1M4 LINE L1 2389 3096 -3050 4089 135 31 24 chr1 74430650 74431393 -168232960 + L1PA16 LINE L1 5415 6162 -4 271 303 131 32 chr1 74431393 74431596 -168232757 + L1M4 LINE L1 3096 3277 -2869 306 362 84 45 chr1 74431889 74432510 -168231843 - L2 LINE L2 -1086 2228 1584 229 320 0 13 chr1 74433969 74434044 -168230309 + MIR SINE MIR 87 160 -102 252 0 0 0 chr1 74435194 74435222 -168229131 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1582 181 7 27 chr1 74435229 74435522 -168228831 - AluJo SINE Alu -25 287 1 674 255 99 0 chr1 74439644 74439836 -168224517 + MER20 DNA MER1_type 8 218 -1 23 0 0 0 chr1 74439892 74439915 -168224438 + AT_rich Low_complexity Low_complexity 1 23 0 1822 152 30 3 chr1 74439920 74440096 -168224257 - AluSx SINE Alu -1 311 122 189 0 0 0 chr1 74440096 74440117 -168224236 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1822 152 30 3 chr1 74440117 74440243 -168224110 - AluSx SINE Alu -190 122 1 591 75 21 43 chr1 74440399 74440493 -168223860 + AluSg/x SINE Alu 174 265 -44 293 47 23 0 chr1 74440498 74440541 -168223812 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr1 74441082 74441103 -168223250 + AT_rich Low_complexity Low_complexity 1 21 0 203 345 107 0 chr1 74441280 74441364 -168222989 - MIR SINE MIR -160 102 10 406 69 14 14 chr1 74441741 74441813 -168222540 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 35 0 0 0 chr1 74442341 74442376 -168221977 + AT_rich Low_complexity Low_complexity 1 35 0 3157 137 55 6 chr1 74444281 74444813 -168219540 + L1MA7 LINE L1 5440 5997 -294 357 215 54 0 chr1 74444820 74444913 -168219440 + L1MA7 LINE L1 6179 6276 -15 1812 131 34 30 chr1 74446058 74446355 -168217998 - AluSx SINE Alu -14 298 1 338 318 147 48 chr1 74446542 74446659 -168217694 + L3 LINE CR1 970 1074 -503 1734 150 3 38 chr1 74446659 74446979 -168217374 + AluJb SINE Alu 1 309 -3 338 318 147 48 chr1 74446979 74447216 -168217137 + L3 LINE CR1 1074 1359 -218 180 217 152 65 chr1 74448162 74448254 -168216099 + L2 LINE L2 3214 3313 0 528 261 195 27 chr1 74448302 74448559 -168215794 + L2 LINE L2 3008 3307 -6 1341 238 66 62 chr1 74448743 74449230 -168215123 - L1MCb LINE L1 -5196 849 361 24 32 0 0 chr1 74450464 74450495 -168213858 + AT_rich Low_complexity Low_complexity 1 31 0 1627 192 58 26 chr1 74450656 74451037 -168213316 - MLT1D LTR MaLR 0 505 113 1852 176 0 3 chr1 74451048 74451354 -168212999 - AluJb SINE Alu -2 310 6 2808 3 0 0 chr1 74451384 74451691 -168212662 - AluYa5 SINE Alu -4 307 1 226 169 70 84 chr1 74451692 74451763 -168212590 - MLT1D LTR MaLR -517 109 40 817 479 82 4 chr1 74452032 74452328 -168212025 + AluSg SINE Alu 6 321 0 2093 186 16 3 chr1 74452508 74452895 -168211458 - L1MC1 LINE L1 0 6333 5942 186 378 10 10 chr1 74452919 74453017 -168211336 - MIR SINE MIR -67 141 44 33 0 0 0 chr1 74453091 74453124 -168211229 + AT_rich Low_complexity Low_complexity 1 33 0 202 286 0 0 chr1 74453232 74453281 -168211072 + MIR SINE MIR 90 138 -124 1090 74 0 14 chr1 74453285 74453468 -168210885 - L1PA3 LINE L1 0 6155 5998 22 0 0 0 chr1 74454077 74454099 -168210254 + AT_rich Low_complexity Low_complexity 1 22 0 200 342 115 74 chr1 74454648 74455008 -168209345 - L2 LINE L2 -4 3268 2885 207 0 0 0 chr1 74455008 74455031 -168209322 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 200 342 115 74 chr1 74455031 74455114 -168209239 - L2 LINE L2 -387 2885 2807 308 119 0 0 chr1 74455294 74455336 -168209017 - 5S rRNA rRNA -79 42 1 368 237 21 10 chr1 74455535 74455632 -168208721 - L1ME LINE L1 -462 5659 5562 580 128 11 0 chr1 74456662 74456756 -168207597 + THE1C LTR MaLR 279 373 -2 9839 133 10 31 chr1 74456758 74458372 -168205981 + THE1C-int LTR MaLR 1 1580 0 1808 152 70 17 chr1 74458372 74458728 -168205625 + THE1C LTR MaLR 1 375 0 248 233 96 0 chr1 74458729 74458802 -168205551 - MIR SINE MIR -101 161 82 1599 142 168 45 chr1 74459664 74460045 -168204308 - MSTA LTR MaLR 0 428 1 347 286 0 0 chr1 74460445 74460543 -168203810 - L1ME LINE L1 -637 5525 5428 1923 245 50 77 chr1 74460551 74461356 -168202997 - L1ME1 LINE L1 -19 6216 5434 1858 77 11 29 chr1 74461356 74461630 -168202723 - AluY SINE Alu -3 308 40 1923 245 50 77 chr1 74461630 74461678 -168202675 - L1ME1 LINE L1 -801 5434 5386 6780 129 19 21 chr1 74461685 74463257 -168201096 - L1MA1 LINE L1 0 7721 6158 2094 223 8 91 chr1 74463258 74463983 -168200370 + L1MA9 LINE L1 5336 6000 -312 * 4154 110 39 14 chr1 74463492 74464130 -168200223 + L1PA11 LINE L1 5514 6167 -7 854 154 89 0 chr1 74464128 74464297 -168200056 - L1MA1 LINE L1 -1394 6171 5988 * 11114 183 19 76 chr1 74464294 74466819 -168197534 - L1MA1 LINE L1 -5165 2400 20 291 28 0 0 chr1 74466833 74466869 -168197484 + (TTCC)n Simple_repeat Simple_repeat 4 39 0 1128 117 18 0 chr1 74466869 74467153 -168197200 - AluY SINE Alu 0 422 136 1005 229 70 36 chr1 74467156 74467514 -168196839 - L1ME1 LINE L1 -819 5396 5027 * 1724 298 66 15 chr1 74467511 74468523 -168195830 - L1ME1 LINE L1 -2043 4172 3109 360 0 0 0 chr1 74468523 74468563 -168195790 + (TG)n Simple_repeat Simple_repeat 1 40 0 1062 336 55 42 chr1 74468583 74470062 -168194291 - L1ME1 LINE L1 -4839 1557 60 22 56 0 0 chr1 74470095 74470131 -168194222 + AT_rich Low_complexity Low_complexity 1 36 0 215 200 0 0 chr1 74470514 74470554 -168193799 + GA-rich Low_complexity Low_complexity 1 40 0 27 0 0 0 chr1 74470961 74470988 -168193365 + AT_rich Low_complexity Low_complexity 1 27 0 1904 261 67 29 chr1 74471038 74471523 -168192830 + MLT1E2 LTR MaLR 9 523 -103 1322 236 77 51 chr1 74471523 74472015 -168192338 - MLT1D LTR MaLR 0 505 1 1904 261 67 29 chr1 74472015 74472124 -168192229 + MLT1E2 LTR MaLR 523 626 0 317 149 20 2 chr1 74472166 74472231 -168192122 + MLT1E2 LTR MaLR 402 626 0 26 50 0 0 chr1 74472550 74472590 -168191763 + AT_rich Low_complexity Low_complexity 1 40 0 2205 115 50 0 chr1 74472676 74473014 -168191339 - THE1A LTR MaLR 0 355 1 236 79 26 0 chr1 74473014 74473052 -168191301 - THE1A-int LTR MaLR 0 1580 1542 22 35 0 0 chr1 74473117 74473146 -168191207 + AT_rich Low_complexity Low_complexity 1 29 0 352 311 31 66 chr1 74475839 74476035 -168188318 + MER5A DNA MER1_type 1 189 0 1377 223 131 42 chr1 74476619 74477046 -168187307 - LTR40a LTR ERVL -54 465 1 21 0 0 0 chr1 74478392 74478413 -168185940 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr1 74478452 74478480 -168185873 + (CA)n Simple_repeat Simple_repeat 2 29 0 321 273 14 70 chr1 74479064 74479207 -168185146 + MIR SINE MIR 72 206 -56 421 229 15 84 chr1 74479223 74479354 -168184999 + L2 LINE L2 3191 3312 -1 180 286 24 0 chr1 74479579 74479621 -168184732 - MIR SINE MIR -55 153 111 459 35 0 0 chr1 74482060 74482117 -168182236 + (TC)n Simple_repeat Simple_repeat 2 58 0 297 0 0 0 chr1 74482126 74482159 -168182194 + (TG)n Simple_repeat Simple_repeat 2 34 0 263 226 20 10 chr1 74482839 74482941 -168181412 + (TTTAA)n Simple_repeat Simple_repeat 4 106 0 449 319 88 12 chr1 74483241 74483401 -168180952 + MIR3 SINE MIR 35 206 -2 1999 118 4 0 chr1 74483535 74483815 -168180538 + AluSx SINE Alu 20 300 -12 180 309 0 55 chr1 74483835 74483890 -168180463 - MIR SINE MIR -138 70 19 226 312 30 16 chr1 74484123 74484227 -168180126 - MIR SINE MIR -66 142 32 939 215 68 108 chr1 74486215 74486717 -168177636 - L1MC4 LINE L1 -1 8041 7560 1282 172 0 0 chr1 74486751 74486949 -168177404 - AluSg/x SINE Alu -23 289 92 1365 236 110 45 chr1 74486959 74487439 -168176914 - L1MC4 LINE L1 -507 7535 7087 1922 106 8 0 chr1 74487439 74487704 -168176649 - AluSp SINE Alu -7 306 40 5801 57 4 1 chr1 74487704 74488439 -168175914 - L1PA7 LINE L1 -3 6151 5415 1365 236 110 45 chr1 74488439 74488621 -168175732 - L1MC4 LINE L1 -954 7088 6829 2446 129 8 8 chr1 74489380 74489753 -168174600 - THE1C LTR MaLR -2 373 1 202 253 11 22 chr1 74489914 74490005 -168174348 + A-rich Low_complexity Low_complexity 1 90 0 2094 161 45 33 chr1 74490024 74490447 -168173906 - MSTA LTR MaLR 0 428 1 8619 178 34 16 chr1 74490469 74492073 -168172280 - MSTA-int LTR MaLR -19 1632 1 2221 163 49 5 chr1 74492073 74492483 -168171870 - MSTA LTR MaLR 0 428 1 2420 73 3 0 chr1 74492970 74493270 -168171083 - AluSg SINE Alu -9 301 1 9159 96 13 3 chr1 74493592 74494866 -168169487 - HSMAR1 DNA Mariner 0 1287 1 304 378 82 59 chr1 74494902 74495243 -168169110 + L2 LINE L2 2924 3272 0 327 25 0 0 chr1 74495377 74495417 -168168936 + (CA)n Simple_repeat Simple_repeat 2 41 0 424 239 11 0 chr1 74495676 74495768 -168168585 - L1MD3 LINE L1 -11 7984 7892 474 256 70 13 chr1 74495976 74496132 -168168221 - L1MD2 LINE L1 -214 6145 5981 714 245 29 0 chr1 74496133 74496337 -168168016 - L1MDa LINE L1 -4455 2085 1876 963 248 14 0 chr1 74496454 74496676 -168167677 - L1MD2 LINE L1 -446 5913 5689 2729 207 44 28 chr1 74496679 74497477 -168166876 - L1MDa LINE L1 -3856 2684 1876 918 243 28 0 chr1 74497773 74497991 -168166362 + MER58A DNA MER1_type 1 224 0 1981 131 3 16 chr1 74499255 74499567 -168164786 + AluSx SINE Alu 1 308 -4 2212 121 0 0 chr1 74499569 74499876 -168164477 + AluY SINE Alu 3 309 -2 222 234 0 0 chr1 74500052 74500099 -168164254 - MIR SINE MIR -5 257 211 207 167 0 0 chr1 74500761 74500797 -168163556 + L2 LINE L2 3273 3308 -5 594 322 39 27 chr1 74500975 74501233 -168163120 + MIR SINE MIR 2 262 0 225 128 0 0 chr1 74502730 74502777 -168161576 + (T)n Simple_repeat Simple_repeat 1 47 0 23 0 0 0 chr1 74503238 74503261 -168161092 + AT_rich Low_complexity Low_complexity 1 23 0 255 377 19 13 chr1 74503268 74503427 -168160926 - L2 LINE L2 -5 3308 3149 1512 313 162 21 chr1 74503509 74504579 -168159774 - L2 LINE L2 -360 2954 1734 317 247 31 21 chr1 74504617 74504714 -168159639 - L1MC5 LINE L1 -72 7889 7792 291 308 70 43 chr1 74505977 74506162 -168158191 - MIR SINE MIR -61 201 12 307 350 36 15 chr1 74506287 74506424 -168157929 + L3 LINE CR1 1372 1511 -66 957 236 27 14 chr1 74506745 74506965 -168157388 + MER58A DNA MER1_type 1 223 -1 2394 84 43 6 chr1 74508408 74508755 -168155598 + THE1B LTR MaLR 5 364 0 2768 16 0 0 chr1 74508871 74509179 -168155174 + AluYb8 SINE Alu 1 308 -10 245 303 42 67 chr1 74509646 74509811 -168154542 - MIR SINE MIR -2 260 100 25 31 0 0 chr1 74510394 74510426 -168153927 + AT_rich Low_complexity Low_complexity 1 32 0 238 378 64 6 chr1 74510941 74511146 -168153207 + MIR3 SINE MIR 3 216 -46 1985 153 0 0 chr1 74511441 74511736 -168152617 + AluSx SINE Alu 3 297 -15 489 110 0 0 chr1 74512369 74512442 -168151911 + (TG)n Simple_repeat Simple_repeat 2 74 0 29 47 0 0 chr1 74512854 74512897 -168151456 + AT_rich Low_complexity Low_complexity 1 43 0 1962 182 131 9 chr1 74512916 74513351 -168151002 - MER39 LTR ERV1 -3 704 217 446 157 22 0 chr1 74513355 74513444 -168150909 - AluSg/x SINE Alu -2 307 217 373 139 14 28 chr1 74513448 74513520 -168150833 - MER39B LTR ERV1 -582 71 1 3686 197 51 71 chr1 74513572 74513795 -168150558 - MER39B-int LTR ERV1 -145 6186 5960 207 0 0 0 chr1 74513795 74513818 -168150535 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3686 197 51 71 chr1 74513818 74514690 -168149663 - MER39B-int LTR ERV1 -371 5960 5113 215 227 53 0 chr1 74514691 74514766 -168149587 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 315 0 0 0 chr1 74514786 74514821 -168149532 + (TTA)n Simple_repeat Simple_repeat 2 36 0 226 302 119 44 chr1 74514825 74514984 -168149369 - MIR SINE MIR -20 242 72 1211 232 104 29 chr1 74515954 74516299 -168148054 - MLT1A2 LTR MaLR 0 374 4 2259 257 40 19 chr1 74516307 74516887 -168147466 - MLT1A2-int LTR MaLR -5 1730 1139 976 243 23 12 chr1 74516941 74517104 -168147249 - MLT1A2 LTR MaLR -112 262 93 2761 123 24 0 chr1 74517104 74517519 -168146834 + MSTA LTR MaLR 1 425 -3 976 243 23 12 chr1 74517519 74517614 -168146739 - MLT1A2 LTR MaLR -281 93 1 182 62 31 0 chr1 74518420 74518452 -168145901 + (TTTAA)n Simple_repeat Simple_repeat 4 36 0 218 0 94 0 chr1 74519644 74519676 -168144677 + T-rich Low_complexity Low_complexity 1 35 0 2969 97 24 56 chr1 74519683 74520149 -168144204 - MLT2A2 LTR ERVL 0 453 3 198 0 0 0 chr1 74521561 74521583 -168142770 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 22 80 0 0 chr1 74523442 74523492 -168140861 + AT_rich Low_complexity Low_complexity 1 50 0 180 152 0 0 chr1 74523504 74523537 -168140816 + (TG)n Simple_repeat Simple_repeat 2 34 0 758 277 29 29 chr1 74524676 74524936 -168139417 - MIR SINE MIR 0 262 4 489 179 41 73 chr1 74526136 74526259 -168138094 - MER103 DNA DNA -45 121 3 252 0 0 0 chr1 74526644 74526672 -168137681 + (CA)n Simple_repeat Simple_repeat 1 28 0 1557 172 32 41 chr1 74526815 74527129 -168137224 - AluJb SINE Alu -1 311 1 429 20 0 0 chr1 74528237 74528287 -168136066 + (CA)n Simple_repeat Simple_repeat 2 51 0 284 82 0 20 chr1 74528571 74528620 -168135733 + (TA)n Simple_repeat Simple_repeat 1 48 0 25 51 0 0 chr1 74528632 74528671 -168135682 + AT_rich Low_complexity Low_complexity 1 39 0 993 178 13 59 chr1 74529268 74529327 -168135026 + AluSq SINE Alu 84 144 -169 233 0 62 0 chr1 74529327 74529359 -168134994 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 993 178 13 59 chr1 74529359 74529535 -168134818 + AluSq SINE Alu 144 308 -5 835 286 59 80 chr1 74529613 74530156 -168134197 - L2 LINE L2 -1 3312 2782 294 307 66 24 chr1 74530374 74530540 -168133813 - MIR SINE MIR -16 246 74 643 287 102 54 chr1 74532409 74532743 -168131610 + MLT1K LTR MaLR 184 533 -55 911 305 32 12 chr1 74534009 74534350 -168130003 + L1MEc LINE L1 36 383 -6013 1669 255 63 39 chr1 74534448 74535161 -168129192 + L1MEc LINE L1 615 1344 -5052 2606 239 63 32 chr1 74535221 74535936 -168128417 - MER21B LTR ERV1 -114 749 13 358 278 73 24 chr1 74535936 74536141 -168128212 + L1MCa LINE L1 1340 1554 -4872 321 242 83 17 chr1 74536149 74536269 -168128084 + L1ME2 LINE L1 5896 6023 -141 641 221 26 0 chr1 74536283 74536437 -168127916 + L1MA10 LINE L1 6176 6333 -1 200 173 19 19 chr1 74536778 74536830 -168127523 + A-rich Low_complexity Low_complexity 2 53 0 505 334 129 27 chr1 74536948 74537408 -168126945 + L2 LINE L2 2592 3139 -174 748 241 94 15 chr1 74537408 74537611 -168126742 + MER20 DNA MER1_type 1 219 0 505 334 129 27 chr1 74537611 74537806 -168126547 + L2 LINE L2 3139 3313 0 1650 90 0 0 chr1 74539327 74539538 -168124815 + L1PA7 LINE L1 5944 6154 0 206 276 26 0 chr1 74539772 74539848 -168124505 + (TTTA)n Simple_repeat Simple_repeat 4 81 0 2336 158 63 19 chr1 74540622 74541032 -168123321 - MSTA LTR MaLR 0 428 1 2117 174 5 65 chr1 74541087 74541502 -168122851 - MLT1B LTR MaLR 0 390 1 1433 117 0 0 chr1 74542987 74543175 -168121178 + AluSx SINE Alu 1 188 -124 29 0 0 0 chr1 74543270 74543299 -168121054 + GC_rich Low_complexity Low_complexity 1 29 0 415 291 5 38 chr1 74543308 74543594 -168120759 + C-rich Low_complexity Low_complexity 1 276 0 5229 167 56 11 chr1 74543782 74543839 -168120514 + MER50-int LTR ERV1 3642 3695 -3510 2356 95 0 3 chr1 74543839 74544134 -168120219 - AluSx SINE Alu -18 294 1 5229 167 56 11 chr1 74544134 74545069 -168119284 + MER50-int LTR ERV1 3695 4679 -2526 1384 185 70 21 chr1 74545230 74545517 -168118836 + AluJo SINE Alu 1 301 -11 866 31 0 0 chr1 74545795 74545892 -168118461 - MER50-int LTR ERV1 -6853 352 256 2882 147 7 2 chr1 74545892 74546347 -168118006 - L1MC1 LINE L1 -398 5935 5479 261 234 0 26 chr1 74546397 74546474 -168117879 - AluJ/FRAM SINE Alu 0 302 228 659 161 8 17 chr1 74546476 74546594 -168117759 - AluSg/x SINE Alu 0 312 196 992 199 52 14 chr1 74546697 74547002 -168117351 - L1 LINE L1 -914 5232 4934 2442 73 20 0 chr1 74547021 74547324 -168117029 - AluSx SINE Alu -3 309 1 419 205 57 33 chr1 74548017 74548139 -168116214 - MIR SINE MIR -89 173 49 23 0 0 0 chr1 74548224 74548247 -168116106 + AT_rich Low_complexity Low_complexity 1 23 0 702 122 76 15 chr1 74548404 74548535 -168115818 - L1MB7 LINE L1 0 6184 6046 1013 121 0 0 chr1 74548556 74548696 -168115657 - AluSg/x SINE Alu -14 298 159 697 137 0 0 chr1 74548796 74548898 -168115455 - AluJb SINE Alu -209 103 2 2118 93 22 6 chr1 74548899 74549212 -168115141 - Tigger3b DNA MER2_type -230 1002 685 1229 95 0 0 chr1 74549212 74549370 -168114983 - AluSg/x SINE Alu -21 291 134 1972 130 17 3 chr1 74549370 74549663 -168114690 - AluJb SINE Alu -15 297 1 425 158 75 30 chr1 74549668 74549801 -168114552 - Tigger3b DNA MER2_type -535 697 559 1578 118 56 7 chr1 74549815 74550085 -168114268 - Tigger3b DNA MER2_type -610 621 339 1745 139 22 44 chr1 74550089 74550405 -168113948 - AluJo SINE Alu -3 309 1 527 58 14 0 chr1 74550406 74550475 -168113878 + MSTB1 LTR MaLR 363 432 0 302 188 141 0 chr1 74550481 74550566 -168113787 - L1MD3 LINE L1 -7 7988 7892 1850 150 7 10 chr1 74550829 74551122 -168113231 + AluJb SINE Alu 1 292 -20 1923 129 23 23 chr1 74551124 74551433 -168112920 + AluSq SINE Alu 1 309 -4 886 123 0 89 chr1 74551990 74552136 -168112217 - FLAM_C SINE Alu 0 133 1 682 206 0 44 chr1 74552146 74552282 -168112071 - FLAM_A SINE Alu -5 137 8 1060 214 65 13 chr1 74552291 74552520 -168111833 + MER97c DNA MER1_type? 225 465 -625 1797 157 7 3 chr1 74552839 74553126 -168111227 + AluJo SINE Alu 1 288 -24 330 324 65 6 chr1 74553219 74553389 -168110964 - L2 LINE L2 0 3313 3134 465 125 0 0 chr1 74553522 74553594 -168110759 + Alu SINE Alu 236 307 -3 2189 100 0 32 chr1 74553885 74554195 -168110158 + AluSx SINE Alu 1 300 -12 674 219 80 86 chr1 74554225 74554412 -168109941 + AluJo SINE Alu 99 284 -28 189 0 0 0 chr1 74554412 74554433 -168109920 + (GGAAA)n Simple_repeat Simple_repeat 3 23 0 932 106 0 64 chr1 74554809 74554950 -168109403 + AluJo SINE Alu 2 133 -169 1677 148 4 0 chr1 74554954 74555211 -168109142 + AluSx SINE Alu 3 260 -52 524 265 0 25 chr1 74555350 74555512 -168108841 + AluJo SINE Alu 140 297 -15 196 368 0 0 chr1 74555513 74555581 -168108772 + L2 LINE L2 2707 2774 -540 34 0 0 0 chr1 74555604 74555638 -168108715 + AT_rich Low_complexity Low_complexity 1 34 0 846 161 0 0 chr1 74555639 74555763 -168108590 - FLAM_C SINE Alu -19 124 1 379 236 34 114 chr1 74555829 74556021 -168108332 + L2 LINE L2 2967 3134 -179 2558 46 0 7 chr1 74556021 74556324 -168108029 - AluY SINE Alu -10 301 1 379 236 34 114 chr1 74556324 74556394 -168107959 + L2 LINE L2 3134 3208 -105 2254 72 22 0 chr1 74556477 74556779 -168107574 - AluSp SINE Alu 0 308 1 929 104 0 0 chr1 74557444 74557569 -168106784 + AluJb SINE Alu 164 288 -24 2109 147 37 4 chr1 74557585 74558182 -168106171 + AluSg SINE Alu 2 284 -26 2508 53 7 0 chr1 74558469 74558772 -168105581 - AluY SINE Alu -5 306 2 1887 132 3 19 chr1 74558777 74559087 -168105266 - AluSx SINE Alu -7 305 1 1932 193 44 14 chr1 74559269 74559700 -168104653 - L1ME2 LINE L1 -175 5989 5546 2211 97 3 0 chr1 74559764 74560052 -168104301 - AluSp SINE Alu -24 289 1 1687 149 3 47 chr1 74560471 74560792 -168103561 - AluY SINE Alu -4 307 1 1625 208 84 102 chr1 74560792 74561258 -168103095 - L1MC5 LINE L1 -554 7407 6934 2033 145 0 0 chr1 74561258 74561555 -168102798 - AluSx SINE Alu -15 297 1 1625 208 84 102 chr1 74561555 74561632 -168102721 - L1MC5 LINE L1 -1027 6934 6857 2839 128 5 2 chr1 74561632 74562045 -168102308 - L1PA15 LINE L1 -1 6164 5751 1625 208 84 102 chr1 74562045 74562077 -168102276 - L1MC5 LINE L1 -1104 6857 6826 837 150 15 23 chr1 74562077 74562210 -168102143 - FLAM_C SINE Alu 0 133 2 1625 208 84 102 chr1 74562210 74562357 -168101996 - L1MC5 LINE L1 -1135 6826 6696 6610 81 10 0 chr1 74562370 74563321 -168101032 - L1PB1 LINE L1 0 6151 5204 1113 76 12 12 chr1 74563375 74563546 -168100807 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 2040 131 0 0 chr1 74563546 74563820 -168100533 - AluSx SINE Alu -38 274 1 268 204 67 44 chr1 74563954 74564069 -168100284 - L1MA9 LINE L1 -6 6306 6202 1285 201 38 69 chr1 74564079 74564188 -168100165 + AluJb SINE Alu 3 114 -198 2221 120 3 0 chr1 74564188 74564496 -168099857 - AluSx SINE Alu -3 309 1 1285 201 38 69 chr1 74564496 74564705 -168099648 + AluJb SINE Alu 114 311 -1 599 97 0 11 chr1 74564741 74564834 -168099519 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 1727 139 0 0 chr1 74565353 74565612 -168098741 - AluSx SINE Alu -5 307 49 1010 133 14 0 chr1 74565616 74565759 -168098594 + AluSg/x SINE Alu 141 285 -25 2207 178 23 0 chr1 74565926 74566280 -168098073 + MLT1A1 LTR MaLR 4 365 0 22 0 0 0 chr1 74566474 74566496 -168097857 + AT_rich Low_complexity Low_complexity 1 22 0 264 77 0 0 chr1 74566522 74566561 -168097792 + (TA)n Simple_repeat Simple_repeat 1 39 0 2196 111 0 3 chr1 74566561 74566858 -168097495 - AluSg SINE Alu -14 296 1 180 0 0 0 chr1 74566869 74566889 -168097464 + (T)n Simple_repeat Simple_repeat 1 20 0 2337 93 10 3 chr1 74566967 74567277 -168097076 - AluSq SINE Alu -1 312 1 696 105 42 0 chr1 74567609 74567704 -168096649 - HY3 scRNA scRNA -2 99 1 1614 51 25 0 chr1 74567762 74567959 -168096394 - L1PA13 LINE L1 -3 6160 5959 525 248 7 7 chr1 74568464 74568609 -168095744 + MER53 DNA DNA 17 161 -28 913 128 0 0 chr1 74568834 74568959 -168095394 + AluJb SINE Alu 1 125 -187 246 129 48 0 chr1 74568959 74569021 -168095332 + (TA)n Simple_repeat Simple_repeat 2 66 0 501 136 0 37 chr1 74569035 74569053 -168095300 + AluSc SINE Alu 110 127 -182 258 32 0 0 chr1 74569053 74569084 -168095269 + (CA)n Simple_repeat Simple_repeat 2 32 0 501 136 0 37 chr1 74569084 74569146 -168095207 + AluSc SINE Alu 127 187 -122 1455 96 5 10 chr1 74569146 74569343 -168095010 + AluSg/x SINE Alu 99 294 -16 1755 145 13 31 chr1 74569492 74569809 -168094544 - AluJb SINE Alu -1 311 1 910 153 0 0 chr1 74570158 74570289 -168094064 + FLAM_C SINE Alu 1 131 -2 1571 179 3 24 chr1 74570348 74570645 -168093708 - AluJb SINE Alu -21 291 1 667 322 195 7 chr1 74570645 74571101 -168093252 - L2 LINE L2 -952 2362 1821 180 290 20 100 chr1 74571192 74571292 -168093061 + MER5B DNA MER1_type 2 93 -85 705 128 0 0 chr1 74571362 74571456 -168092897 + AluSg/x SINE Alu 198 291 -18 272 246 22 140 chr1 74572098 74572214 -168092139 - MIR SINE MIR -31 231 141 1776 128 20 77 chr1 74572214 74572349 -168092004 + AluSx SINE Alu 1 142 -169 2253 75 3 17 chr1 74572349 74572641 -168091712 + AluSp SINE Alu 1 288 -25 1776 128 20 77 chr1 74572641 74572833 -168091520 + AluSx SINE Alu 142 311 0 272 246 22 140 chr1 74572833 74572894 -168091459 - MIR SINE MIR -121 141 74 1846 157 0 10 chr1 74572948 74573242 -168091111 + AluJb SINE Alu 1 291 -21 2361 185 43 45 chr1 74573250 74573721 -168090632 + L1MD2 LINE L1 5804 6275 -84 2589 65 0 0 chr1 74573721 74574030 -168090323 - AluY SINE Alu -2 309 1 2361 185 43 45 chr1 74574030 74574115 -168090238 + L1MD2 LINE L1 6275 6359 0 2882 78 3 11 chr1 74574179 74574537 -168089816 + THE1A LTR MaLR 1 355 0 2207 101 21 0 chr1 74574852 74575139 -168089214 + AluSx SINE Alu 1 293 -19 3449 214 24 31 chr1 74575506 74575748 -168088605 - MER50-int LTR ERV1 -3675 3530 3288 2293 103 3 3 chr1 74575748 74576049 -168088304 - AluSq SINE Alu -12 301 1 3449 214 24 31 chr1 74576049 74576554 -168087799 - MER50-int LTR ERV1 -3917 3288 2788 * 4469 126 40 18 chr1 74576550 74577307 -168087046 - MER50-int LTR ERV1 -5355 1850 998 672 91 10 20 chr1 74577307 74577406 -168086947 + MER4A LTR ERV1 1 98 -566 340 83 21 0 chr1 74577407 74577455 -168086898 + MER4A LTR ERV1 262 310 -354 2098 142 3 0 chr1 74577483 74577792 -168086561 + AluSx SINE Alu 1 310 -2 413 79 0 16 chr1 74577799 74577862 -168086491 + (GAGAA)n Simple_repeat Simple_repeat 4 65 0 1805 121 11 28 chr1 74577862 74578144 -168086209 + MER4A LTR ERV1 388 664 0 234 186 0 0 chr1 74578324 74578367 -168085986 - L2 LINE L2 -6 3307 3265 2163 120 0 16 chr1 74578527 74578844 -168085509 + AluSx SINE Alu 1 312 0 28 0 0 0 chr1 74578822 74578850 -168085503 + AT_rich Low_complexity Low_complexity 1 28 0 2321 108 0 0 chr1 74579226 74579521 -168084832 - AluSg SINE Alu -12 298 4 189 323 0 62 chr1 74579529 74579625 -168084728 + L2 LINE L2 2596 2685 -629 1651 167 0 49 chr1 74579644 74579811 -168084542 - AluJo SINE Alu -11 301 127 212 31 62 0 chr1 74579811 74579843 -168084510 + T-rich Low_complexity Low_complexity 2 35 0 2270 98 0 0 chr1 74579843 74580129 -168084224 - AluSq SINE Alu -27 286 1 1651 167 0 49 chr1 74580129 74580265 -168084088 - AluJo SINE Alu -183 129 12 2301 111 0 0 chr1 74580287 74580584 -168083769 - AluSx SINE Alu -15 297 1 373 350 57 46 chr1 74580806 74581155 -168083198 + L2 LINE L2 2919 3271 -1 21 0 0 0 chr1 74581288 74581309 -168083044 + AT_rich Low_complexity Low_complexity 1 21 0 1919 166 0 0 chr1 74581324 74581619 -168082734 + AluJb SINE Alu 12 306 -6 1550 154 0 57 chr1 74581725 74582004 -168082349 - AluSx SINE Alu -15 297 35 984 165 0 24 chr1 74582035 74582205 -168082148 + FRAM SINE Alu 1 166 0 26 0 0 0 chr1 74582296 74582322 -168082031 + AT_rich Low_complexity Low_complexity 1 26 0 909 194 15 29 chr1 74582478 74582693 -168081660 - L1MC1 LINE L1 -88 6256 6042 2089 159 33 98 chr1 74582766 74583180 -168081173 - L1MC1 LINE L1 -283 6050 5671 2263 83 24 0 chr1 74583180 74583469 -168080884 - AluY SINE Alu -15 296 1 2089 159 33 98 chr1 74583469 74583545 -168080808 - L1MC1 LINE L1 -662 5671 5592 569 181 140 53 chr1 74583702 74583873 -168080480 - AluJo SINE Alu -6 306 121 1868 163 20 0 chr1 74584081 74584375 -168079978 - AluSx SINE Alu -12 300 1 2166 100 23 7 chr1 74584452 74584752 -168079601 - AluSx SINE Alu -7 305 1 192 231 0 0 chr1 74585296 74585335 -168079018 - MIR SINE MIR -113 149 111 189 184 61 0 chr1 74585809 74585858 -168078495 + MIR SINE MIR 93 144 -118 2083 130 3 0 chr1 74586501 74586794 -168077559 + AluSx SINE Alu 1 294 -18 1599 181 36 30 chr1 74587104 74587407 -168076946 + AluJo SINE Alu 1 305 -7 207 0 0 0 chr1 74587530 74587553 -168076800 + (TG)n Simple_repeat Simple_repeat 2 24 0 188 35 35 0 chr1 74587552 74587581 -168076772 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 * 2185 60 0 11 chr1 74587591 74587856 -168076497 - AluY SINE Alu -49 262 1 330 26 0 0 chr1 74588801 74588840 -168075513 + (TG)n Simple_repeat Simple_repeat 2 40 0 2083 120 0 7 chr1 74589259 74589550 -168074803 - AluSx SINE Alu -23 289 1 4959 134 87 98 chr1 74590187 74590241 -168074112 + Tigger1 DNA MER2_type 1 54 -2364 1335 148 148 22 chr1 74590241 74590518 -168073835 - AluJb SINE Alu 0 312 1 4959 134 87 98 chr1 74590518 74591568 -168072785 + Tigger1 DNA MER2_type 54 1093 -1325 1687 203 60 10 chr1 74591727 74591795 -168072558 + L1MB7 LINE L1 5297 5360 -824 1580 148 63 0 chr1 74591795 74592065 -168072288 + AluJb SINE Alu 3 289 -23 1687 203 60 10 chr1 74592065 74592409 -168071944 + L1MB7 LINE L1 5360 5730 -454 741 96 0 0 chr1 74592411 74592515 -168071838 + AluJb SINE Alu 191 294 -18 2190 160 39 22 chr1 74592516 74592973 -168071380 + L1MB7 LINE L1 5720 6184 0 253 277 0 0 chr1 74593061 74593144 -168071209 + A-rich Low_complexity Low_complexity 1 83 0 2228 109 3 0 chr1 74593567 74593860 -168070493 + AluSx SINE Alu 1 294 -18 300 298 24 0 chr1 74594071 74594155 -168070198 - L2 LINE L2 -1 3271 3186 384 339 8 25 chr1 74594297 74594505 -168069848 - MIR SINE MIR -42 220 16 905 175 74 55 chr1 74595006 74595244 -168069109 + AluJo SINE Alu 63 304 0 2044 143 3 0 chr1 74595292 74595593 -168068760 + AluJb SINE Alu 5 306 -6 642 207 84 28 chr1 74595753 74595959 -168068394 - MIR SINE MIR -3 259 40 2235 115 3 6 chr1 74596271 74596583 -168067770 + AluSq SINE Alu 1 311 -2 235 250 0 18 chr1 74596853 74596909 -168067444 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 717 121 65 16 chr1 74597207 74597331 -168067022 - FLAM_C SINE Alu -3 130 1 749 128 0 26 chr1 74597751 74597868 -168066485 + FLAM_C SINE Alu 5 118 -15 28 29 0 0 chr1 74597887 74597922 -168066431 + AT_rich Low_complexity Low_complexity 1 35 0 1988 109 7 36 chr1 74598044 74598346 -168066007 - AluSx SINE Alu -19 293 1 247 337 3 0 chr1 74598554 74598630 -168065723 + MIR SINE MIR 40 116 -103 1037 116 7 7 chr1 74598666 74598812 -168065541 + AluSq/x SINE Alu 2 147 -165 196 214 0 100 chr1 74598834 74598904 -168065449 + MER5A DNA MER1_type 121 183 -6 738 167 27 7 chr1 74598918 74599068 -168065285 + MER5B DNA MER1_type 26 178 0 2295 68 7 0 chr1 74599098 74599415 -168064938 - AluY SINE Alu 0 319 1 193 346 173 0 chr1 74599416 74599618 -168064735 - MIR SINE MIR -2 260 24 480 273 98 0 chr1 74599821 74599964 -168064389 + MIR SINE MIR 99 255 -7 207 0 0 0 chr1 74600464 74600487 -168063866 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2065 130 0 17 chr1 74600656 74600955 -168063398 - AluSx SINE Alu -18 294 1 772 168 0 15 chr1 74601231 74601362 -168062991 - FLAM_C SINE Alu -4 129 1 2406 107 0 0 chr1 74601393 74601702 -168062651 + AluSx SINE Alu 1 309 -3 1128 137 0 27 chr1 74601715 74601921 -168062432 + AluSg/x SINE Alu 121 310 0 280 154 0 0 chr1 74601964 74602018 -168062335 + AluJb SINE Alu 1 39 -261 737 176 9 0 chr1 74602031 74602260 -168062093 + C-rich Low_complexity Low_complexity 1 231 0 192 184 0 0 chr1 74602275 74602324 -168062029 + C-rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr1 74602331 74602352 -168062001 + GC_rich Low_complexity Low_complexity 1 21 0 1557 180 3 37 chr1 74603074 74603369 -168060984 - AluJo SINE Alu -24 288 4 1501 186 14 7 chr1 74603400 74603675 -168060678 + AluJb SINE Alu 17 293 -19 180 0 0 0 chr1 74603951 74603971 -168060382 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2079 122 10 0 chr1 74603975 74604263 -168060090 - AluSq SINE Alu -22 291 1 22 88 0 0 chr1 74604457 74604514 -168059839 + AT_rich Low_complexity Low_complexity 1 57 0 207 0 0 0 chr1 74604659 74604682 -168059671 + (A)n Simple_repeat Simple_repeat 1 23 0 930 115 122 0 chr1 74604745 74604893 -168059460 + AluSg/x SINE Alu 135 300 -10 1840 150 3 29 chr1 74604900 74605206 -168059147 + AluJb SINE Alu 1 298 -14 255 61 0 0 chr1 74605744 74605777 -168058576 + (TCCCC)n Simple_repeat Simple_repeat 1 33 0 1443 199 17 27 chr1 74605777 74606074 -168058279 - AluJo SINE Alu -8 294 1 2179 134 0 3 chr1 74606336 74606649 -168057704 - AluSx SINE Alu 0 312 1 1953 124 40 4 chr1 74606755 74607065 -168057288 - AluSx SINE Alu 0 320 1 4125 122 25 15 chr1 74607065 74607737 -168056616 + L1MB4 LINE L1 5461 6139 -41 816 143 8 8 chr1 74607916 74608042 -168056311 + AluJo SINE Alu 1 126 -186 * 1099 192 14 5 chr1 74608041 74608249 -168056104 - AluJo SINE Alu -18 294 85 301 214 56 71 chr1 74608475 74608601 -168055752 - AluSp SINE Alu -178 125 2 985 178 5 32 chr1 74608601 74608786 -168055567 + AluJo SINE Alu 116 295 -17 22 0 0 0 chr1 74609032 74609054 -168055299 + AT_rich Low_complexity Low_complexity 1 22 0 323 228 82 57 chr1 74609054 74609192 -168055161 - L1ME4a LINE L1 -11 6110 5966 207 0 0 0 chr1 74609192 74609215 -168055138 + (TC)n Simple_repeat Simple_repeat 2 24 0 323 228 82 57 chr1 74609215 74609234 -168055119 - L1ME4a LINE L1 -155 5966 5949 307 70 0 0 chr1 74609307 74609350 -168055003 - Alu SINE Alu -7 293 251 1912 140 3 45 chr1 74609353 74609661 -168054692 - AluSx SINE Alu -17 295 1 332 165 35 42 chr1 74609771 74610043 -168054310 - L1MC2 LINE L1 -3 7976 6123 2352 88 7 7 chr1 74610415 74610712 -168053641 + AluSx SINE Alu 1 297 -15 203 103 0 0 chr1 74610799 74610828 -168053525 - MER5B DNA MER1_type -147 31 3 829 176 0 0 chr1 74610868 74610999 -168053354 + FLAM_C SINE Alu 1 131 -12 398 115 29 46 chr1 74611002 74611176 -168053177 + (TA)n Simple_repeat Simple_repeat 2 172 0 31 82 0 0 chr1 74611417 74611490 -168052863 + AT_rich Low_complexity Low_complexity 1 73 0 2315 90 0 19 chr1 74611552 74611863 -168052490 + AluSx SINE Alu 1 305 -7 213 121 0 0 chr1 74612116 74612149 -168052204 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 327 98 0 0 chr1 74612486 74612537 -168051816 - MER97b DNA MER1_type? -745 308 258 692 194 0 23 chr1 74612559 74612688 -168051665 + FLAM_A SINE Alu 2 127 -6 1805 145 0 65 chr1 74612717 74613042 -168051311 + AluJb SINE Alu 1 304 -8 250 206 0 59 chr1 74613123 74613191 -168051162 - MER97a DNA MER1_type? -677 217 154 710 75 0 0 chr1 74613193 74613286 -168051067 - MSTB1 LTR MaLR 0 432 340 573 59 0 0 chr1 74613293 74613361 -168050992 - AluSg/x SINE Alu -166 143 76 1498 127 0 5 chr1 74613361 74613574 -168050779 - AluSx SINE Alu -100 212 1 21 0 0 0 chr1 74614051 74614072 -168050281 + AT_rich Low_complexity Low_complexity 1 21 0 6497 81 22 67 chr1 74614075 74616022 -168048331 - SVA Other Other -518 1386 393 1300 27 0 0 chr1 74616185 74616333 -168048020 - L1PA3 LINE L1 -4 6151 6004 524 111 0 0 chr1 74616586 74616658 -168047695 - Tigger3(Golem) DNA MER2_type 0 3029 2958 1373 90 6 0 chr1 74616759 74616937 -168047416 + AluSp SINE Alu 130 308 -5 2318 91 10 3 chr1 74617602 74617910 -168046443 - AluY SINE Alu -1 310 1 2251 95 3 0 chr1 74618029 74618324 -168046029 - AluSc SINE Alu -13 296 1 2184 100 0 17 chr1 74618328 74618627 -168045726 - AluSx SINE Alu -18 294 1 470 324 66 29 chr1 74618782 74619054 -168045299 + L3b LINE CR1 1121 1402 -181 1618 156 232 6 chr1 74619093 74619540 -168044813 - L1MD3 LINE L1 0 8042 7512 399 174 0 0 chr1 74619936 74620005 -168044348 - L2 LINE L2 -3 3310 3242 207 0 0 0 chr1 74620011 74620034 -168044319 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2376 49 14 3 chr1 74620072 74620358 -168043995 - AluSg SINE Alu -21 289 1 26 0 0 0 chr1 74620371 74620397 -168043956 + AT_rich Low_complexity Low_complexity 1 26 0 808 89 89 0 chr1 74620426 74620549 -168043804 + MER85 DNA T2_type 3 136 -3 246 276 10 31 chr1 74622567 74622665 -168041688 + C-rich Low_complexity Low_complexity 2 97 0 906 118 25 12 chr1 74625329 74625490 -168038863 + L1MB3 LINE L1 6002 6164 -19 21 0 0 0 chr1 74626320 74626341 -168038012 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr1 74627828 74627870 -168036483 + AT_rich Low_complexity Low_complexity 1 42 0 1109 193 108 54 chr1 74629180 74629532 -168034821 - MLT1A2 LTR MaLR 0 374 4 723 184 0 7 chr1 74629666 74629807 -168034546 + FLAM_C SINE Alu 2 141 -2 1350 153 0 0 chr1 74629867 74630069 -168034284 + AluJo SINE Alu 88 289 -23 1885 95 110 0 chr1 74630288 74630552 -168033801 + AluSx SINE Alu 20 312 0 2393 117 44 60 chr1 74630621 74630860 -168033493 + Tigger1 DNA MER2_type 1989 2219 -199 2102 110 7 3 chr1 74630860 74631150 -168033203 - AluSx SINE Alu -17 295 5 2393 117 44 60 chr1 74631150 74631346 -168033007 + Tigger1 DNA MER2_type 2219 2417 -1 2462 71 3 3 chr1 74632408 74632719 -168031634 - AluY SINE Alu 0 311 1 180 0 0 0 chr1 74633054 74633074 -168031279 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1844 153 18 0 chr1 74633077 74633358 -168030995 - AluSx SINE Alu -26 286 1 2306 122 0 0 chr1 74633933 74634236 -168030117 - AluSx SINE Alu -9 303 1 1912 154 0 7 chr1 74635301 74635606 -168028747 - AluSx SINE Alu -9 303 1 311 253 178 51 chr1 74635931 74636053 -168028300 - L1ME4a LINE L1 -218 5903 5798 671 200 8 31 chr1 74636053 74636183 -168028170 + FLAM_A SINE Alu 1 127 -6 311 253 178 51 chr1 74636183 74636353 -168028000 - L1ME4a LINE L1 -323 5798 5574 1799 142 40 7 chr1 74636733 74636881 -168027472 + AluSx SINE Alu 1 143 -169 234 0 0 0 chr1 74636881 74636907 -168027446 + (TG)n Simple_repeat Simple_repeat 2 27 0 1799 142 40 7 chr1 74636907 74637060 -168027293 + AluSx SINE Alu 143 312 0 641 263 149 0 chr1 74637331 74637506 -168026847 - MIR SINE MIR -50 212 12 1777 127 33 4 chr1 74638620 74638896 -168025457 - AluSx SINE Alu -27 285 2 2017 121 10 38 chr1 74639396 74639709 -168024644 + AluSx SINE Alu 1 304 -8 377 269 216 0 chr1 74641079 74641213 -168023140 - MER5A DNA MER1_type -6 183 21 2293 108 0 0 chr1 74642349 74642645 -168021708 - AluSx SINE Alu -16 296 1 21 0 0 0 chr1 74644673 74644694 -168019659 + AT_rich Low_complexity Low_complexity 1 21 0 741 170 0 0 chr1 74645658 74645764 -168018589 + FLAM_C SINE Alu 1 106 -37 1864 109 88 0 chr1 74645902 74646176 -168018177 + AluSx SINE Alu 1 298 -14 1028 151 0 6 chr1 74646304 74646489 -168017864 - AluSc SINE Alu 0 304 121 1007 93 31 0 chr1 74646708 74646837 -168017516 + AluSq/x SINE Alu 3 135 -177 651 156 10 0 chr1 74649901 74649997 -168014356 - AluJb SINE Alu -194 118 22 2190 102 3 0 chr1 74650268 74650561 -168013792 - AluSp SINE Alu -17 296 3 624 234 0 0 chr1 74650833 74650957 -168013396 + AluJb SINE Alu 9 132 -180 2506 63 0 3 chr1 74650959 74651258 -168013095 + AluY SINE Alu 12 309 -2 2010 143 7 3 chr1 74651260 74651560 -168012793 + AluSx SINE Alu 1 301 -11 2046 126 10 0 chr1 74651561 74651854 -168012499 + AluSg SINE Alu 1 296 -14 1806 179 0 0 chr1 74652270 74652571 -168011782 - AluJo SINE Alu -11 301 1 346 139 40 10 chr1 74652752 74652837 -168011516 + (TA)n Simple_repeat Simple_repeat 2 92 -13 2472 87 3 0 chr1 74652837 74653148 -168011205 - AluSp SINE Alu -1 312 1 346 139 40 10 chr1 74653148 74653163 -168011190 + (TA)n Simple_repeat Simple_repeat 92 105 0 573 128 20 39 chr1 74653319 74653421 -168010932 - L1MD2 LINE L1 -14 6345 6246 1766 116 4 0 chr1 74653806 74654048 -168010305 - AluSp SINE Alu -67 246 4 1209 188 130 0 chr1 74654679 74654940 -168009413 + AluJo SINE Alu 2 296 -16 593 148 23 0 chr1 74655338 74655426 -168008927 + AluJb SINE Alu 207 296 -16 1423 177 69 17 chr1 74655429 74655717 -168008636 + AluSx SINE Alu 1 303 -9 1799 122 70 0 chr1 74655862 74656133 -168008220 - AluSx SINE Alu -22 290 1 2609 184 130 69 chr1 74656842 74658112 -168006241 - L1MB7 LINE L1 0 6184 4845 2058 201 86 28 chr1 74658561 74658875 -168005478 - L1MB7 LINE L1 -1287 4859 4564 2183 130 7 0 chr1 74658875 74659176 -168005177 + AluSx SINE Alu 3 305 -7 2058 201 86 28 chr1 74659176 74659469 -168004884 - L1MB7 LINE L1 -1582 4564 4217 1566 179 57 4 chr1 74659562 74659716 -168004637 - AluSx SINE Alu -18 294 150 2447 72 7 7 chr1 74659716 74660022 -168004331 - AluY SINE Alu -5 306 1 200 59 29 0 chr1 74660026 74660060 -168004293 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1566 179 57 4 chr1 74660060 74660179 -168004174 - AluSx SINE Alu -164 148 1 207 0 0 0 chr1 74660181 74660204 -168004149 + (T)n Simple_repeat Simple_repeat 1 23 0 979 128 0 0 chr1 74660204 74660337 -168004016 - AluSq/x SINE Alu -179 133 1 257 335 46 52 chr1 74660817 74660990 -168003363 + MIR3 SINE MIR 10 181 -27 195 273 8 91 chr1 74661054 74661175 -168003178 - MER5B DNA MER1_type -22 156 46 27 81 0 0 chr1 74661747 74661809 -168002544 + AT_rich Low_complexity Low_complexity 1 62 0 2134 115 10 0 chr1 74664229 74664517 -167999836 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr1 74665164 74665190 -167999163 + AT_rich Low_complexity Low_complexity 1 26 0 1430 85 11 5 chr1 74665250 74665439 -167998914 - AluSg/x SINE Alu 0 310 121 290 438 8 0 chr1 74665526 74665647 -167998706 + C-rich Low_complexity Low_complexity 5 126 0 2093 136 0 0 chr1 74665837 74666138 -167998215 + AluSx SINE Alu 1 301 -11 2324 174 158 10 chr1 74667303 74667798 -167996555 - L1MB5 LINE L1 0 6174 5607 2120 126 3 7 chr1 74667827 74668137 -167996216 - AluSg SINE Alu -1 309 1 1371 162 82 30 chr1 74668156 74668459 -167995894 - L1MB3 LINE L1 -8 6175 5857 317 395 97 4 chr1 74669040 74669268 -167995085 - L3 LINE CR1 -775 802 554 1622 169 20 24 chr1 74669415 74669710 -167994643 + AluJb SINE Alu 1 294 -18 323 221 147 11 chr1 74669781 74669876 -167994477 - L1ME4a LINE L1 -10 6111 6004 423 307 68 17 chr1 74670020 74670196 -167994157 - MIR SINE MIR -44 218 34 942 222 206 53 chr1 74670248 74670681 -167993672 + MLT1D LTR MaLR 5 503 -2 2446 62 0 0 chr1 74670705 74670995 -167993358 + AluY SINE Alu 1 290 -21 384 22 0 0 chr1 74670995 74671040 -167993313 + (TG)n Simple_repeat Simple_repeat 2 46 0 2292 109 0 7 chr1 74671046 74671348 -167993005 + AluSx SINE Alu 1 300 -12 745 164 7 57 chr1 74671660 74671800 -167992553 - FLAM_C SINE Alu 0 133 1 1309 179 5 0 chr1 74671906 74672124 -167992229 + AluJb SINE Alu 55 273 -39 373 140 0 0 chr1 74672216 74672273 -167992080 - Alu SINE Alu -3 298 242 1490 93 0 0 chr1 74672656 74672838 -167991515 - AluY SINE Alu -129 182 1 366 246 0 0 chr1 74672838 74672907 -167991446 - AluSq SINE Alu -99 204 136 2020 117 11 0 chr1 74673203 74673506 -167990847 - AluSc SINE Alu 0 309 1 627 172 23 78 chr1 74674384 74674512 -167989841 + FLAM_C SINE Alu 1 121 -12 1502 208 10 20 chr1 74674541 74674844 -167989509 + AluJo SINE Alu 1 300 -12 362 156 0 91 chr1 74674844 74674921 -167989432 + AluJ/FRAM SINE Alu 220 289 -13 422 265 182 12 chr1 74674957 74675127 -167989226 + MIR SINE MIR 4 202 -60 2415 109 0 0 chr1 74675208 74675520 -167988833 - AluSx SINE Alu 0 312 1 2182 112 0 3 chr1 74677658 74677952 -167986401 + AluSg SINE Alu 1 293 -17 198 254 175 16 chr1 74678031 74678094 -167986259 + L2 LINE L2 3149 3221 -51 2407 70 7 0 chr1 74678650 74678950 -167985403 - AluY SINE Alu -9 302 1 1508 167 9 116 chr1 74679292 74679454 -167984899 - AluJb SINE Alu -3 299 121 396 0 0 0 chr1 74679454 74679498 -167984855 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2054 104 7 21 chr1 74679498 74679785 -167984568 - AluSp SINE Alu -30 283 1 1508 167 9 116 chr1 74679785 74679956 -167984397 - AluJb SINE Alu -179 123 1 2125 95 0 7 chr1 74679970 74680290 -167984063 - AluSx SINE Alu 0 318 1 26 0 0 0 chr1 74680408 74680434 -167983919 + AT_rich Low_complexity Low_complexity 1 26 0 540 77 0 0 chr1 74680718 74680783 -167983570 + AluJ/FLAM SINE Alu 4 68 -244 321 307 66 24 chr1 74732815 74732981 -167931372 + MIR SINE MIR 74 246 -16 859 265 70 90 chr1 74733199 74733742 -167930611 + L2 LINE L2 2782 3312 -1 947 175 12 75 chr1 74733820 74733996 -167930357 - AluSq SINE Alu -5 308 149 197 0 71 0 chr1 74733996 74734024 -167930329 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 947 175 12 75 chr1 74734024 74734087 -167930266 - AluSq SINE Alu -164 149 84 308 348 90 57 chr1 74734787 74735086 -167929267 + L2 LINE L2 2949 3257 -15 206 213 21 0 chr1 74735920 74735967 -167928386 + MIR SINE MIR 73 120 -142 6395 94 7 1 chr1 74736153 74737315 -167927038 + L1PA14 LINE L1 4991 6159 -2 526 333 128 26 chr1 74738726 74738921 -167925432 - L2 LINE L2 0 3313 3139 660 241 94 15 chr1 74738921 74739124 -167925229 - MER20 DNA MER1_type 0 219 1 526 333 128 26 chr1 74739124 74739584 -167924769 - L2 LINE L2 -174 3139 2592 200 173 19 19 chr1 74739702 74739754 -167924599 + T-rich Low_complexity Low_complexity 2 53 0 594 221 26 0 chr1 74740094 74740248 -167924105 - L1MA10 LINE L1 -1 6333 6176 313 242 83 17 chr1 74740262 74740382 -167923971 - L1ME2 LINE L1 -141 6023 5896 342 277 73 29 chr1 74740390 74740596 -167923757 - L1MCa LINE L1 -4872 1554 1340 2553 239 63 32 chr1 74740596 74741311 -167923042 + MER21B LTR ERV1 13 749 -114 1604 255 63 39 chr1 74741371 74742084 -167922269 - L1MEc LINE L1 -5052 1344 615 414 248 143 0 chr1 74742323 74742484 -167921869 + L1M4 LINE L1 5144 5327 -819 1142 111 18 0 chr1 74742487 74742767 -167921586 + AluY SINE Alu 136 418 0 291 28 0 0 chr1 74742767 74742803 -167921550 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 4676 215 20 28 chr1 74742817 74743847 -167920506 + L1M1 LINE L1 20 1041 -6524 677 211 41 29 chr1 74743838 74744009 -167920344 + L1M1 LINE L1 267 439 -7126 * 1923 192 19 0 chr1 74744016 74744386 -167919967 + L1M1 LINE L1 1055 1431 -6134 522 128 0 0 chr1 74744487 74744573 -167919780 - L1 LINE L1 -1322 6243 6158 2132 223 8 88 chr1 74744574 74745297 -167919056 + L1MA9 LINE L1 5336 6000 -312 * 4190 110 39 11 chr1 74744808 74745444 -167918909 + L1PA11 LINE L1 5514 6167 -7 854 154 89 0 chr1 74745442 74745611 -167918742 - L1 LINE L1 -1394 6171 5988 * 5005 177 25 10 chr1 74745608 74746518 -167917835 - L1 LINE L1 -5165 2400 1477 198 226 32 16 chr1 74746846 74746908 -167917445 - MIR3 SINE MIR -137 71 9 219 388 69 0 chr1 74748308 74748424 -167915929 + L2 LINE L2 3149 3272 0 642 332 56 48 chr1 74748482 74748877 -167915476 + L3 LINE CR1 1114 1511 -66 1373 216 136 47 chr1 74749624 74750051 -167914302 - LTR40a LTR ERVL -54 465 1 21 0 0 0 chr1 74751397 74751418 -167912935 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr1 74751457 74751485 -167912868 + (CA)n Simple_repeat Simple_repeat 2 29 0 263 226 20 10 chr1 74752364 74752466 -167911887 + (TTTAA)n Simple_repeat Simple_repeat 4 106 0 449 319 88 12 chr1 74752766 74752926 -167911427 + MIR3 SINE MIR 35 206 -2 460 327 66 9 chr1 74753216 74753427 -167910926 + MIR SINE MIR 3 225 -37 1859 106 8 4 chr1 74753531 74753787 -167910566 + AluSx SINE Alu 39 295 -17 403 132 46 7 chr1 74753788 74753940 -167910413 + (TA)n Simple_repeat Simple_repeat 2 159 0 397 275 144 68 chr1 74753979 74754215 -167910138 + MIR SINE MIR 2 255 -7 24 0 0 0 chr1 74754217 74754241 -167910112 + AT_rich Low_complexity Low_complexity 1 24 0 1034 227 31 59 chr1 74755558 74755879 -167908474 + MLT1J1 LTR MaLR 23 334 -112 1936 132 10 0 chr1 74756638 74756926 -167907427 + AluSq SINE Alu 9 299 -14 231 203 0 0 chr1 74757727 74757786 -167906567 + (CA)n Simple_repeat Simple_repeat 1 59 0 32 26 0 0 chr1 74757918 74757957 -167906396 + AT_rich Low_complexity Low_complexity 1 39 0 2129 52 44 0 chr1 74758505 74758808 -167905545 + AluY SINE Alu 1 315 0 273 282 51 0 chr1 74758816 74758894 -167905459 - MIR3 SINE MIR -28 180 99 259 213 21 0 chr1 74759476 74759523 -167904830 + L2 LINE L2 3159 3206 -66 1975 212 48 21 chr1 74760688 74761206 -167903147 - L1MC2 LINE L1 -13 6331 5800 334 346 64 5 chr1 74761269 74761471 -167902882 + MIR SINE MIR 13 226 -36 752 241 36 20 chr1 74762311 74762326 -167902027 - MER58A DNA MER1_type -2196 224 211 1540 184 28 0 chr1 74762326 74762614 -167901739 - AluJb SINE Alu -16 296 1 752 241 36 20 chr1 74762614 74762793 -167901560 - MER58A DNA MER1_type -2209 211 27 443 314 87 44 chr1 74763040 74763269 -167901084 + MIR SINE MIR 11 249 -13 279 342 68 17 chr1 74763312 74763429 -167900924 + MIR SINE MIR 134 256 -6 22 35 0 0 chr1 74763454 74763483 -167900870 + AT_rich Low_complexity Low_complexity 1 29 0 196 371 88 21 chr1 74763715 74763909 -167900444 - MIR SINE MIR -11 251 45 190 353 15 0 chr1 74764107 74764175 -167900178 - L2 LINE L2 -25 3247 3179 282 255 73 36 chr1 74765242 74765373 -167898980 - MIR3 SINE MIR -5 203 65 1032 292 72 18 chr1 74765617 74766130 -167898223 - L1ME4a LINE L1 -218 5903 5363 414 241 115 40 chr1 74766505 74766679 -167897674 - MIR3 SINE MIR -5 203 17 288 329 0 0 chr1 74766731 74766804 -167897549 + MIR3 SINE MIR 90 162 -46 21 57 0 0 chr1 74768277 74768312 -167896041 + AT_rich Low_complexity Low_complexity 1 35 0 253 98 0 0 chr1 74768972 74769013 -167895340 + L1MC4 LINE L1 6658 6698 -1344 235 229 0 0 chr1 74769046 74769094 -167895259 - L1MC4 LINE L1 -1337 6705 6658 651 321 50 69 chr1 74770593 74771014 -167893339 - L2 LINE L2 -4 3309 2897 221 229 9 28 chr1 74772726 74772835 -167891518 + CT-rich Low_complexity Low_complexity 4 110 0 293 0 0 26 chr1 74776185 74776223 -167888130 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 614 228 128 0 chr1 74776511 74776660 -167887693 + MIR SINE MIR 84 251 -11 288 278 125 7 chr1 74776719 74776863 -167887490 - MIR SINE MIR -13 249 89 585 313 103 5 chr1 74777102 74777316 -167887037 + MIR SINE MIR 28 262 0 238 271 14 0 chr1 74777437 74777507 -167886846 + CT-rich Low_complexity Low_complexity 3 73 0 427 339 73 42 chr1 74779367 74779863 -167884490 + L2 LINE L2 2185 2695 -619 28 61 0 0 chr1 74782622 74782671 -167881682 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr1 74782881 74782903 -167881450 + AT_rich Low_complexity Low_complexity 1 22 0 317 277 12 0 chr1 74782903 74782986 -167881367 + (CATA)n Simple_repeat Simple_repeat 4 87 0 365 323 25 19 chr1 74783101 74783259 -167881094 - MIR SINE MIR -12 250 92 26 74 0 0 chr1 74783924 74783978 -167880375 + AT_rich Low_complexity Low_complexity 1 54 0 1571 118 4 0 chr1 74785407 74785636 -167878717 - L1PA7 LINE L1 -1822 4324 4095 * 2283 66 10 0 chr1 74785633 74785934 -167878419 + L1PA7 LINE L1 4316 4619 -1527 6539 63 5 1 chr1 74785941 74786775 -167877578 + L1PA7 LINE L1 5305 6141 -13 195 343 0 27 chr1 74786856 74786929 -167877424 - L2 LINE L2 -1 3271 3201 244 236 56 45 chr1 74787507 74787596 -167876757 + MLT1I LTR MaLR 35 124 -285 4565 27 2 3 chr1 74787904 74788631 -167875722 - L1PA4 LINE L1 -361 5794 5071 2862 47 17 0 chr1 74788631 74788990 -167875363 + L1PA4 LINE L1 5786 6153 -2 1610 154 29 29 chr1 74789035 74789314 -167875039 - MER1B DNA MER1_type 0 339 61 22 0 0 0 chr1 74789330 74789352 -167875001 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr1 74789503 74789533 -167874820 + AT_rich Low_complexity Low_complexity 1 30 0 1194 244 89 6 chr1 74789571 74789887 -167874466 + MER2 DNA MER2_type 1 342 -3 228 35 0 0 chr1 74789888 74789917 -167874436 + (TG)n Simple_repeat Simple_repeat 2 30 0 1405 302 23 32 chr1 74790195 74790987 -167873366 - L2 LINE L2 -20 3293 2509 507 271 136 11 chr1 74794168 74794345 -167870008 - MIR SINE MIR 0 262 64 21 0 0 0 chr1 74796019 74796040 -167868313 + AT_rich Low_complexity Low_complexity 1 21 0 19019 100 20 2 chr1 74796401 74799022 -167865331 - Charlie3 DNA MER1_type -4 2706 40 842 345 41 43 chr1 74799332 74799874 -167864479 + L2 LINE L2 2609 3139 -174 25 31 0 0 chr1 74800731 74800763 -167863590 + AT_rich Low_complexity Low_complexity 1 32 0 246 217 19 9 chr1 74800838 74800944 -167863409 + (TA)n Simple_repeat Simple_repeat 2 108 0 1237 275 70 81 chr1 74801504 74801528 -167862825 + L2 LINE L2 2356 2379 -934 2210 97 7 32 chr1 74801528 74801837 -167862516 - AluSq SINE Alu -12 301 1 1237 275 70 81 chr1 74801837 74802782 -167861571 + L2 LINE L2 2379 3308 -5 258 287 40 30 chr1 74802798 74802899 -167861454 - L2 LINE L2 -11 3302 3201 2278 75 0 0 chr1 74802958 74803258 -167861095 - AluY SINE Alu 0 300 1 701 297 56 0 chr1 74803504 74803736 -167860617 + MIR SINE MIR 18 262 0 328 211 26 0 chr1 74804947 74805023 -167859330 - MER116 DNA Mariner -1 79 2 2276 133 11 13 chr1 74805043 74805419 -167858934 - THE1C LTR MaLR 0 375 1 2675 45 0 0 chr1 74805654 74805965 -167858388 - AluY SINE Alu 0 311 1 2143 109 17 0 chr1 74807212 74807514 -167856839 + AluSc SINE Alu 1 307 -2 864 234 45 45 chr1 74807531 74807775 -167856578 - MIR SINE MIR -13 249 6 268 255 113 0 chr1 74808477 74808583 -167855770 - MIR SINE MIR -66 196 79 2063 221 66 7 chr1 74808656 74809095 -167855258 - MLT1F LTR MaLR -2 540 76 366 277 0 0 chr1 74809149 74809232 -167855121 - MLT1F LTR MaLR -459 83 1 589 143 36 0 chr1 74809894 74810006 -167854347 + L1MA7 LINE L1 6175 6290 -1 219 260 14 0 chr1 74812132 74812205 -167852148 + T-rich Low_complexity Low_complexity 5 78 0 2834 3 0 13 chr1 74812648 74812963 -167851390 + AluYa5 SINE Alu 1 311 0 181 57 57 0 chr1 74813213 74813248 -167851105 + (TTTAA)n Simple_repeat Simple_repeat 2 38 0 4451 155 22 3 chr1 74813257 74814017 -167850336 - L1PB4 LINE L1 -26 6130 5356 181 329 98 42 chr1 74814144 74814287 -167850066 - L2 LINE L2 -825 2489 2339 220 340 49 97 chr1 74814363 74814936 -167849417 + L2 LINE L2 2690 3232 -40 21 36 0 0 chr1 74815513 74815541 -167848812 + AT_rich Low_complexity Low_complexity 1 28 0 181 297 40 27 chr1 74816060 74816134 -167848219 - MIR SINE MIR -78 184 110 267 371 7 35 chr1 74816146 74816289 -167848064 - L2 LINE L2 0 3272 3134 486 306 58 23 chr1 74817036 74817209 -167847144 + MIR SINE MIR 37 215 -47 2016 102 34 27 chr1 74817270 74817564 -167846789 - AluSx SINE Alu -16 296 1 279 0 0 0 chr1 74817695 74817726 -167846627 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 369 0 0 0 chr1 74817725 74817766 -167846587 + (GA)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr1 74817767 74817793 -167846560 + AT_rich Low_complexity Low_complexity 1 26 0 195 100 0 0 chr1 74819124 74819154 -167845199 + (T)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr1 74823665 74823686 -167840667 + AT_rich Low_complexity Low_complexity 1 21 0 337 378 25 44 chr1 74824118 74824322 -167840031 + L2 LINE L2 3073 3272 0 243 170 0 0 chr1 74824329 74824376 -167839977 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 520 326 83 5 chr1 74824455 74824673 -167839680 - MIR SINE MIR -24 238 4 198 386 35 40 chr1 74824676 74824878 -167839475 - L2 LINE L2 -41 3231 3031 511 335 163 41 chr1 74825225 74826233 -167838120 - L2 LINE L2 -433 2881 1751 363 44 0 0 chr1 74827508 74827553 -167836800 + (TG)n Simple_repeat Simple_repeat 2 46 0 310 353 105 23 chr1 74828909 74829042 -167835311 - MIR3 SINE MIR -49 159 16 400 296 52 7 chr1 74829118 74829253 -167835100 + MIR SINE MIR 116 256 -6 207 0 0 0 chr1 74829486 74829509 -167834844 + (A)n Simple_repeat Simple_repeat 1 23 0 305 326 0 0 chr1 74829840 74829929 -167834424 + MIR3 SINE MIR 117 205 -3 297 0 0 0 chr1 74832043 74832076 -167832277 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 3089 215 39 33 chr1 74833158 74833194 -167831159 + MER63C DNA MER1_type 77 111 -949 1708 190 0 13 chr1 74833194 74833499 -167830854 + AluJb SINE Alu 1 301 -11 3089 215 39 33 chr1 74833499 74834310 -167830043 + MER63C DNA MER1_type 111 929 -1 366 318 30 15 chr1 74834358 74834490 -167829863 + MIR SINE MIR 81 214 -48 4080 23 0 0 chr1 74834727 74835202 -167829151 - L1PA3 LINE L1 0 6155 5681 1080 283 84 37 chr1 74838126 74838614 -167825739 - MLT1J LTR MaLR 0 511 1 2392 84 0 0 chr1 74839385 74839696 -167824657 - AluY SINE Alu 0 311 1 200 293 43 103 chr1 74840622 74840738 -167823615 - MIR SINE MIR -60 148 40 1401 216 86 79 chr1 74840784 74841257 -167823096 - LTR40b LTR ERVL -1 461 1 1825 149 17 10 chr1 74843388 74843689 -167820664 - AluJb SINE Alu -8 304 2 216 0 0 0 chr1 74844529 74844553 -167819800 + (TAA)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr1 74844994 74845022 -167819331 + AT_rich Low_complexity Low_complexity 1 28 0 189 346 39 0 chr1 74845144 74845222 -167819131 - MIR SINE MIR -76 132 52 22 35 0 0 chr1 74845586 74845615 -167818738 + AT_rich Low_complexity Low_complexity 1 29 0 2118 115 3 3 chr1 74845982 74846278 -167818075 + AluSc SINE Alu 1 296 -13 453 116 0 0 chr1 74846329 74846398 -167817955 + (CA)n Simple_repeat Simple_repeat 2 70 0 258 242 17 8 chr1 74846427 74846547 -167817806 + (TA)n Simple_repeat Simple_repeat 2 122 0 181 300 30 80 chr1 74846597 74846697 -167817656 + L2 LINE L2 3219 3313 0 1316 209 66 46 chr1 74847146 74847495 -167816858 - MLT1A1 LTR MaLR 0 365 10 1772 169 88 3 chr1 74848130 74848461 -167815892 + MLT1A1 LTR MaLR 1 359 -6 514 156 33 0 chr1 74848499 74848589 -167815764 + MER58B DNA MER1_type 249 341 0 240 203 107 13 chr1 74848590 74848666 -167815687 + MIR SINE MIR 18 96 -112 225 234 0 0 chr1 74848814 74848861 -167815492 + MIR SINE MIR 108 154 -108 1270 226 7 15 chr1 74848973 74849243 -167815110 - MLT1C LTR MaLR 0 467 200 201 274 113 75 chr1 74850235 74850341 -167814012 + MIR SINE MIR 2 111 -151 233 347 16 40 chr1 74850764 74850888 -167813465 + MIR SINE MIR 6 126 -136 380 216 194 30 chr1 74850976 74851110 -167813243 - MER5A DNA MER1_type 0 189 34 683 256 110 26 chr1 74852189 74852462 -167811891 + MLT1I LTR MaLR 97 392 -17 413 307 40 12 chr1 74854111 74854282 -167810071 - MIR SINE MIR -44 218 39 187 339 0 0 chr1 74854635 74854691 -167809662 + MIR SINE MIR 81 136 -72 258 32 0 0 chr1 74854736 74854767 -167809586 + (TA)n Simple_repeat Simple_repeat 1 31 0 264 294 112 53 chr1 74854860 74855030 -167809323 + MIR3 SINE MIR 2 176 -32 288 0 0 0 chr1 74855085 74855117 -167809236 + (CAT)n Simple_repeat Simple_repeat 2 33 0 224 240 0 0 chr1 74855174 74855224 -167809129 - MER5A DNA MER1_type -139 50 1 3963 200 103 147 chr1 74855579 74856140 -167808213 + L1MD3 LINE L1 6024 6608 -1387 274 61 0 20 chr1 74856140 74856189 -167808164 - LTR66 LTR ERVL -173 437 390 3963 200 103 147 chr1 74856189 74856895 -167807458 + L1MD3 LINE L1 6608 7371 -624 381 260 39 8 chr1 74856895 74857022 -167807331 + MLT1F1 LTR MaLR 1 131 -436 3963 200 103 147 chr1 74857022 74857612 -167806741 + L1MD3 LINE L1 7371 7985 -10 294 29 0 0 chr1 74858531 74858566 -167805787 + (TG)n Simple_repeat Simple_repeat 2 36 0 356 248 37 28 chr1 74862389 74862498 -167801855 - MER67A LTR ERV1 -3 540 431 352 179 54 24 chr1 74862522 74862690 -167801663 + (TA)n Simple_repeat Simple_repeat 2 174 0 24 0 0 0 chr1 74862861 74862885 -167801468 + AT_rich Low_complexity Low_complexity 1 24 0 1112 222 34 62 chr1 74862894 74863214 -167801139 - MER31B LTR ERV1 -155 311 1 526 278 40 12 chr1 74863419 74863592 -167800761 + MER117 DNA MER1_type 4 181 -16 226 371 28 19 chr1 74863624 74863735 -167800618 - MIR SINE MIR -89 119 2 286 320 0 20 chr1 74865281 74865381 -167798972 - L2 LINE L2 -9 3263 3166 350 319 22 37 chr1 74865496 74865631 -167798722 + MIR SINE MIR 9 141 -121 312 315 165 39 chr1 74865678 74866011 -167798342 + MLT1I LTR MaLR 33 407 -2 270 320 0 0 chr1 74866014 74866089 -167798264 + MIR SINE MIR 180 254 -8 1193 258 135 42 chr1 74866950 74867446 -167796907 - MLT1F LTR MaLR 0 542 1 782 283 9 22 chr1 74868441 74868667 -167795686 + MIR SINE MIR 18 240 -22 23 0 0 0 chr1 74868750 74868773 -167795580 + AT_rich Low_complexity Low_complexity 1 23 0 250 324 102 19 chr1 74868779 74868887 -167795466 + L2 LINE L2 3156 3272 0 203 312 165 0 chr1 74869221 74869330 -167795023 - MIR3 SINE MIR -8 200 74 525 274 52 67 chr1 74870566 74870881 -167793472 - MIR SINE MIR 0 262 40 536 288 79 0 chr1 74872017 74872156 -167792197 - L2 LINE L2 -1 3312 3163 224 304 33 0 chr1 74872172 74872264 -167792089 + (CATATA)n Simple_repeat Simple_repeat 6 100 0 395 294 37 18 chr1 74872550 74872713 -167791640 + MIR3 SINE MIR 31 196 -12 283 262 98 66 chr1 74873069 74873252 -167791101 + L2 LINE L2 3101 3289 -24 190 277 77 15 chr1 74873993 74874058 -167790295 - MIR SINE MIR -103 105 37 2220 155 56 17 chr1 74874058 74874470 -167789883 + MSTA LTR MaLR 1 428 0 22 56 0 0 chr1 74875288 74875324 -167789029 + AT_rich Low_complexity Low_complexity 1 36 0 507 306 174 5 chr1 74875953 74876172 -167788181 - MIR SINE MIR -3 259 4 214 286 171 48 chr1 74876257 74876362 -167787991 - MIR SINE MIR -75 133 16 808 264 17 13 chr1 74877868 74878099 -167786254 + MIR SINE MIR 22 247 -15 1701 203 125 4 chr1 74878570 74878961 -167785392 - MSTB1 LTR MaLR 0 432 1 302 343 81 17 chr1 74879243 74879415 -167784938 - MIR SINE MIR -74 188 6 23 86 0 0 chr1 74880141 74880199 -167784154 + AT_rich Low_complexity Low_complexity 1 58 0 37 23 0 0 chr1 74880272 74880316 -167784037 + AT_rich Low_complexity Low_complexity 1 44 0 351 298 9 18 chr1 74880371 74880485 -167783868 + L2 LINE L2 3199 3311 -2 260 242 15 0 chr1 74881645 74881711 -167782642 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 514 248 7 67 chr1 74884097 74884246 -167780107 + MIR SINE MIR 96 235 -27 195 42 0 0 chr1 74884280 74884304 -167780049 + (CA)n Simple_repeat Simple_repeat 2 25 0 205 250 36 36 chr1 74886727 74886783 -167777570 - L2 LINE L2 -6 3266 3211 649 23 23 0 chr1 74887739 74887826 -167776527 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 322 390 106 37 chr1 74887926 74888305 -167776048 - L2 LINE L2 -14 3258 2854 302 344 92 9 chr1 74888452 74888679 -167775674 - L2 LINE L2 -674 2640 2395 195 174 87 0 chr1 74890000 74890046 -167774307 + L2 LINE L2 3264 3313 0 2072 206 32 30 chr1 74890073 74890577 -167773776 - MLT1D LTR MaLR 0 505 1 351 0 0 0 chr1 74890830 74890869 -167773484 + (CA)n Simple_repeat Simple_repeat 1 39 0 204 283 0 0 chr1 74891788 74891834 -167772519 - MIR SINE MIR -126 136 91 258 32 0 0 chr1 74892423 74892454 -167771899 + (TG)n Simple_repeat Simple_repeat 2 32 0 247 276 0 40 chr1 74893810 74893886 -167770467 + MIR3 SINE MIR 133 205 -3 389 250 69 35 chr1 74894906 74895050 -167769303 - MIR SINE MIR -13 249 101 29933 23 0 0 chr1 74895441 74899769 -167764584 - L1HS LINE L1 -1 6154 1827 1675 27 9 5 chr1 74899783 74900002 -167764351 - L1P LINE L1 -743 5403 5184 4202 36 4 4 chr1 74900002 74900510 -167763843 + L1PA4 LINE L1 5633 6152 -3 247 272 29 37 chr1 74900940 74901076 -167763277 + L1ME LINE L1 5757 5891 -230 1120 147 11 5 chr1 74901407 74901591 -167762762 - AluSg/x SINE Alu -10 302 118 1619 142 168 45 chr1 74902066 74902447 -167761906 - MSTA LTR MaLR 0 428 1 338 286 0 0 chr1 74902848 74902946 -167761407 - L1ME LINE L1 -637 5525 5428 1859 243 50 79 chr1 74902954 74903761 -167760592 - L1ME1 LINE L1 -19 6147 5365 1900 76 11 29 chr1 74903761 74904036 -167760317 - AluY SINE Alu -2 309 40 1859 243 50 79 chr1 74904036 74904084 -167760269 - L1ME1 LINE L1 -801 5365 5317 2044 98 21 27 chr1 74904091 74904427 -167759926 - L1MA1 LINE L1 0 6302 5969 461 287 75 21 chr1 74905787 74905975 -167758378 - MIR SINE MIR 0 262 65 823 193 13 69 chr1 74906937 74907170 -167757183 + AluJb SINE Alu 91 310 -2 351 113 0 0 chr1 74907377 74907439 -167756914 + (TC)n Simple_repeat Simple_repeat 2 63 0 180 77 0 0 chr1 74907445 74907471 -167756882 + (GA)n Simple_repeat Simple_repeat 2 27 0 319 244 0 26 chr1 74907471 74907549 -167756804 - L1MC4 LINE L1 -1353 6689 6614 189 214 26 26 chr1 74907819 74907936 -167756417 + (TA)n Simple_repeat Simple_repeat 2 118 0 465 289 128 5 chr1 74908012 74908230 -167756123 - L2 LINE L2 -79 3234 2990 306 0 0 0 chr1 74908339 74908373 -167755980 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 68 0 0 chr1 74908962 74909006 -167755347 + AT_rich Low_complexity Low_complexity 1 44 0 211 269 0 19 chr1 74909091 74909143 -167755210 + L2 LINE L2 3251 3301 -12 282 260 16 79 chr1 74909416 74909543 -167754810 + L2 LINE L2 3138 3256 -57 1976 89 0 16 chr1 74909749 74910006 -167754347 - AluY SINE Alu -58 253 1 22 0 0 0 chr1 74910151 74910173 -167754180 + AT_rich Low_complexity Low_complexity 1 22 0 382 300 40 0 chr1 74910428 74910528 -167753825 - L2 LINE L2 0 3272 3169 731 189 8 0 chr1 74910926 74911058 -167753295 + FLAM_C SINE Alu 1 133 0 8396 137 12 36 chr1 74911718 74913102 -167751251 + THE1C-int LTR MaLR 230 1580 0 1828 152 70 17 chr1 74913102 74913458 -167750895 + THE1C LTR MaLR 1 375 0 245 233 96 0 chr1 74913459 74913532 -167750821 - MIR SINE MIR -101 161 82 1307 177 117 20 chr1 74914011 74914343 -167750010 + MLT1D LTR MaLR 163 503 -2 441 0 0 0 chr1 74914413 74914462 -167749891 + (TA)n Simple_repeat Simple_repeat 1 49 0 2340 81 0 3 chr1 74914462 74914760 -167749593 - AluY SINE Alu -14 297 1 22 0 0 0 chr1 74914954 74914976 -167749377 + AT_rich Low_complexity Low_complexity 1 22 0 305 289 92 21 chr1 74915030 74915172 -167749181 + L1M4 LINE L1 2958 3109 -3037 236 305 52 58 chr1 74915476 74915650 -167748703 + L1MEd LINE L1 318 490 -5629 2113 185 40 19 chr1 74915667 74916088 -167748265 - MSTB1 LTR MaLR -2 430 1 736 282 77 99 chr1 74916194 74916622 -167747731 + L1MEd LINE L1 601 1002 -5127 2009 149 0 0 chr1 74916622 74916911 -167747442 + AluSx SINE Alu 1 289 -23 736 282 77 99 chr1 74916911 74917366 -167746987 + L1MEd LINE L1 1002 1465 -4664 240 284 0 0 chr1 74917766 74917840 -167746513 + MLT1I LTR MaLR 329 402 -7 325 360 119 39 chr1 74918056 74918492 -167745861 - L2 LINE L2 -14 3258 2784 302 344 92 9 chr1 74918585 74918812 -167745541 - L2 LINE L2 -674 2640 2395 195 174 87 0 chr1 74920133 74920179 -167744174 + L2 LINE L2 3264 3313 0 2071 206 32 30 chr1 74920206 74920710 -167743643 - MLT1D LTR MaLR 0 505 1 369 0 0 0 chr1 74920963 74921004 -167743349 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 283 0 0 chr1 74921923 74921969 -167742384 - MIR SINE MIR -126 136 91 258 32 0 0 chr1 74922558 74922589 -167741764 + (TG)n Simple_repeat Simple_repeat 2 32 0 247 276 0 40 chr1 74923944 74924020 -167740333 + MIR3 SINE MIR 133 205 -3 374 257 69 35 chr1 74925040 74925184 -167739169 - MIR SINE MIR -13 249 101 43061 30 21 3 chr1 74925577 74931621 -167732732 - L1HS LINE L1 0 6155 2 322 245 75 0 chr1 74931622 74931716 -167732637 + MIR SINE MIR 80 180 -82 2048 132 0 0 chr1 74932440 74932735 -167731618 + AluSg1 SINE Alu 1 295 -14 23 0 0 0 chr1 74933014 74933037 -167731316 + AT_rich Low_complexity Low_complexity 1 23 0 306 268 32 32 chr1 74933935 74934092 -167730261 - MER103 DNA DNA -7 159 3 1737 314 34 36 chr1 74935083 74936261 -167728092 - Harlequin LTR ERV1 -138 6511 5339 327 322 8 0 chr1 74936674 74936795 -167727558 - Harlequin LTR ERV1 -3744 3152 3031 1098 347 8 23 chr1 74937014 74937679 -167726674 - Harlequin LTR ERV1 -2029 5756 5102 1013 340 32 30 chr1 74937679 74938499 -167725854 - Harlequin LTR ERV1 -2615 4034 3214 234 0 0 0 chr1 74938499 74938525 -167725828 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 2058 321 51 51 chr1 74938722 74939739 -167724614 - Harlequin LTR ERV1 -3676 4109 3094 2404 69 20 0 chr1 74939739 74940042 -167724311 + AluY SINE Alu 1 309 -2 2058 321 51 51 chr1 74940042 74941785 -167722568 - Harlequin LTR ERV1 -4691 3094 954 487 360 5 0 chr1 74942006 74942206 -167722147 - Harlequin LTR ERV1 -6807 978 778 220 389 66 18 chr1 74943682 74943849 -167720504 - MIR3 SINE MIR -4 204 30 1300 213 91 9 chr1 74944335 74944654 -167719699 - MER2 DNA MER2_type 0 345 1 328 292 50 8 chr1 74945554 74945674 -167718679 + MER117 DNA MER1_type 1 125 -72 282 289 66 50 chr1 74945676 74945797 -167718556 + L2 LINE L2 3174 3296 -17 318 224 37 67 chr1 74945799 74945933 -167718420 + L1MCa LINE L1 1979 2108 -4318 2168 165 5 44 chr1 74949738 74949813 -167714540 - Tigger2 DNA MER2_type 0 2718 2642 2157 129 7 0 chr1 74949813 74950123 -167714230 - AluSx SINE Alu 0 312 1 2168 165 5 44 chr1 74950123 74950454 -167713899 - Tigger2 DNA MER2_type -76 2642 2328 305 170 0 0 chr1 74950444 74950491 -167713862 + MER8 DNA MER2_type 191 237 -2 * 1559 243 57 74 chr1 74950617 74951257 -167713096 - MER77 LTR ERV1 -9 596 55 342 363 112 38 chr1 74951622 74952041 -167712312 + L3 LINE CR1 1066 1515 -62 333 382 60 27 chr1 74952088 74952423 -167711930 - L2 LINE L2 -640 2674 2329 1364 253 49 6 chr1 74953128 74953476 -167710877 - MLT1A1 LTR MaLR -2 363 1 1713 188 58 0 chr1 74953944 74954269 -167710084 + MER2 DNA MER2_type 1 344 0 760 235 159 62 chr1 74954344 74954783 -167709570 - MLT1L LTR MaLR 0 615 134 198 103 0 0 chr1 74955625 74955654 -167708699 + (A)n Simple_repeat Simple_repeat 1 29 0 195 292 32 124 chr1 74955658 74955843 -167708510 + MIR SINE MIR 15 182 -80 380 294 141 35 chr1 74956283 74956453 -167707900 - MIR SINE MIR -71 191 4 231 374 11 0 chr1 74957230 74957321 -167707032 - LTR67 LTR ERVL -367 190 99 235 241 17 0 chr1 74958516 74958574 -167705779 - MIR SINE MIR -12 250 192 6073 146 22 22 chr1 74958940 74960049 -167704304 + L1MC1 LINE L1 5219 6328 -5 282 210 62 37 chr1 74960477 74960558 -167703795 + MIR3 SINE MIR 77 159 -49 381 267 38 0 chr1 74961624 74961729 -167702624 - MER117 DNA MER1_type -82 115 7 883 288 102 35 chr1 74961857 74962519 -167701834 + L2 LINE L2 2591 3310 -3 229 340 180 7 chr1 74964155 74964305 -167700048 + MIR SINE MIR 66 241 -21 312 315 47 20 chr1 74964396 74964545 -167699808 + MIR SINE MIR 74 226 -36 490 249 124 53 chr1 74964712 74964937 -167699416 - L2 LINE L2 0 3313 3073 773 271 10 0 chr1 74964982 74965174 -167699179 + MIR SINE MIR 69 262 0 345 257 59 0 chr1 74966325 74966426 -167697927 - MLT1K LTR MaLR -44 544 438 1733 239 48 68 chr1 74968363 74968924 -167695429 - MER77 LTR ERV1 -4 601 52 22 0 0 0 chr1 74969179 74969201 -167695152 + AT_rich Low_complexity Low_complexity 1 22 0 1947 137 16 25 chr1 74970573 74970759 -167693594 - AluSx SINE Alu -1 311 128 387 0 0 0 chr1 74970759 74970802 -167693551 + (TG)n Simple_repeat Simple_repeat 2 44 0 1947 137 16 25 chr1 74970802 74970929 -167693424 - AluSx SINE Alu -184 128 1 252 0 0 0 chr1 74971010 74971038 -167693315 + (CA)n Simple_repeat Simple_repeat 1 28 0 327 286 131 24 chr1 74971089 74971257 -167693096 - L1MEd LINE L1 -4600 1710 1525 584 277 62 63 chr1 74971869 74972282 -167692071 - L1MEd LINE L1 -914 1576 1080 26 50 0 0 chr1 74972449 74972489 -167691864 + AT_rich Low_complexity Low_complexity 1 40 0 196 340 94 79 chr1 74972677 74972942 -167691411 + L3 LINE CR1 180 448 -1129 987 223 124 41 chr1 74973514 74973648 -167690705 - MER110A LTR ERV1 0 468 346 1717 143 43 0 chr1 74973648 74973944 -167690409 - AluSx SINE Alu 0 319 13 987 223 124 41 chr1 74973944 74974220 -167690133 - MER110A LTR ERV1 -122 346 23 196 250 197 0 chr1 74974615 74974691 -167689662 + MER5B DNA MER1_type 1 91 -87 211 250 0 19 chr1 74975094 74975146 -167689207 - MER5B DNA MER1_type -103 75 25 186 284 43 86 chr1 74976107 74976223 -167688130 + L3 LINE CR1 482 592 -985 24 53 0 0 chr1 74977232 74977270 -167687083 + AT_rich Low_complexity Low_complexity 1 38 0 845 277 94 60 chr1 74978523 74979003 -167685350 + L2 LINE L2 2818 3313 0 408 333 93 13 chr1 74979105 74979330 -167685023 - MIR SINE MIR -8 254 12 209 408 172 0 chr1 74979413 74979570 -167684783 + L2 LINE L2 2577 2760 -554 457 198 63 54 chr1 74979987 74980098 -167684255 + L2 LINE L2 3188 3299 -14 591 282 120 34 chr1 74981730 74981996 -167682357 - MLT1I LTR MaLR -74 335 47 490 246 22 91 chr1 74982037 74982313 -167682040 + L2 LINE L2 3057 3313 0 240 290 200 40 chr1 74983285 74983485 -167680868 + MIR SINE MIR 4 235 -27 343 311 68 25 chr1 74984683 74984844 -167679509 - MIR SINE MIR -3 259 92 367 220 227 60 chr1 74984845 74984995 -167679358 + MER96 DNA MER1_type? 1 175 0 188 359 106 45 chr1 74985181 74985557 -167678796 - L2 LINE L2 0 3313 2915 188 0 74 0 chr1 74986254 74986281 -167678072 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 287 339 55 0 chr1 74986619 74986728 -167677625 - L2 LINE L2 0 3313 3199 186 242 0 97 chr1 74986817 74986879 -167677474 - L2 LINE L2 -7 3265 3210 273 298 46 53 chr1 74987251 74987318 -167677035 + MIR SINE MIR 78 145 -117 2439 62 13 3 chr1 74987318 74987626 -167676727 + AluY SINE Alu 1 311 0 273 298 46 53 chr1 74987626 74987689 -167676664 + MIR SINE MIR 145 207 -55 272 342 43 0 chr1 74987753 74987870 -167676483 + L2 LINE L2 3191 3312 -1 286 288 0 0 chr1 74988341 74988407 -167675946 + MER81 DNA DNA 42 107 -7 629 233 0 0 chr1 74988912 74989032 -167675321 + FLAM_C SINE Alu 1 120 -23 201 94 0 0 chr1 74989033 74989065 -167675288 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2084 108 3 3 chr1 74989587 74989875 -167674478 - AluSc SINE Alu -21 288 1 200 377 0 0 chr1 74989875 74989944 -167674409 + MIR SINE MIR 38 106 -102 204 67 0 0 chr1 74989974 74990004 -167674349 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 242 250 0 0 chr1 74990079 74990123 -167674230 - MER20 DNA MER1_type 0 219 176 241 294 163 25 chr1 74990285 74990445 -167673908 - MLT1K LTR MaLR -340 248 67 335 322 109 35 chr1 74990498 74990672 -167673681 - MIR SINE MIR -56 206 20 2225 84 0 7 chr1 74993701 74993986 -167670367 + AluSq SINE Alu 18 300 -13 240 237 37 89 chr1 74994396 74994483 -167669870 - L1ME4a LINE L1 -1 6120 6041 2099 125 3 10 chr1 74994483 74994795 -167669558 - AluSx SINE Alu -2 310 1 240 237 37 89 chr1 74994795 74994842 -167669511 - L1ME4a LINE L1 -80 6041 5993 2202 108 0 0 chr1 74995031 74995327 -167669026 + AluSg SINE Alu 1 296 -14 26 30 0 0 chr1 74995375 74995408 -167668945 + AT_rich Low_complexity Low_complexity 1 33 0 340 352 50 12 chr1 74995492 74995662 -167668691 + MIR SINE MIR 31 205 -57 2098 122 0 0 chr1 74996707 74997003 -167667350 - AluSx SINE Alu -16 296 1 361 367 104 27 chr1 74997492 74997789 -167666564 - L2 LINE L2 0 3272 2953 1027 139 206 56 chr1 74998011 74998263 -167666090 - MER1B DNA MER1_type -4 335 46 1054 216 49 20 chr1 74998264 74998613 -167665740 + L1ME3A LINE L1 5748 6144 -26 22 0 0 0 chr1 74999998 75000020 -167664333 + AT_rich Low_complexity Low_complexity 1 22 0 558 196 28 70 chr1 75000283 75000426 -167663927 + L2 LINE L2 3165 3301 -12 422 262 19 0 chr1 75000562 75000718 -167663635 - MER58B DNA MER1_type 0 341 202 488 167 27 241 chr1 75000722 75001021 -167663332 + MER58 DNA MER1_type 33 267 -2153 231 159 0 0 chr1 75002085 75002129 -167662224 + L1MA4 LINE L1 6253 6296 -4 2061 113 3 0 chr1 75002663 75002986 -167661367 - AluSx SINE Alu 0 324 1 225 0 0 0 chr1 75003067 75003092 -167661261 + (A)n Simple_repeat Simple_repeat 1 25 0 252 311 58 19 chr1 75003703 75003806 -167660547 + L2 LINE L2 2736 2842 -472 509 312 44 10 chr1 75003835 75004040 -167660313 - MLT1H LTR MaLR -337 212 1 488 270 158 7 chr1 75004558 75004710 -167659643 - MER5A DNA MER1_type -1 188 14 21 36 0 0 chr1 75005297 75005325 -167659028 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 75005422 75005445 -167658908 + AT_rich Low_complexity Low_complexity 1 23 0 1780 189 0 0 chr1 75005657 75005963 -167658390 + AluJb SINE Alu 2 307 -5 180 0 0 0 chr1 75006750 75006770 -167657583 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1198 169 31 19 chr1 75007874 75008134 -167656219 - L1MB8 LINE L1 -5 6173 5911 27 62 0 0 chr1 75008137 75008185 -167656168 + AT_rich Low_complexity Low_complexity 1 48 0 14522 155 41 19 chr1 75008312 75010193 -167654160 - Tigger2 DNA MER2_type -3 2715 755 2332 43 4 0 chr1 75010193 75010508 -167653845 - AluY SINE Alu 0 316 1 14522 155 41 19 chr1 75010508 75011281 -167653072 - Tigger2 DNA MER2_type -1963 755 1 2168 103 53 9 chr1 75011534 75011874 -167652479 + THE1A LTR MaLR 1 355 0 337 193 0 0 chr1 75011983 75012040 -167652313 + L1MA9 LINE L1 6167 6223 -89 762 244 105 26 chr1 75012043 75012333 -167652020 - MSTD LTR MaLR 0 396 45 2025 203 60 21 chr1 75012333 75012801 -167651552 - LTR29 LTR ERV1 0 622 137 284 264 91 9 chr1 75012790 75012900 -167651453 - MER34 LTR ERV1 -423 119 1 * 277 49 0 49 chr1 75012906 75012947 -167651406 - MSTD LTR MaLR -389 39 1 285 151 0 0 chr1 75012950 75013003 -167651350 + L1MA9 LINE L1 6222 6274 -38 1066 257 99 60 chr1 75013046 75013738 -167650615 + L2 LINE L2 2593 3313 0 279 236 0 0 chr1 75013738 75013810 -167650543 + (TGAA)n Simple_repeat Simple_repeat 2 73 0 1785 32 55 0 chr1 75014271 75014489 -167649864 + AluY SINE Alu 1 230 -81 1106 16 0 0 chr1 75014489 75014614 -167649739 + AluY SINE Alu 178 302 -9 211 250 36 0 chr1 75015333 75015389 -167648964 + L2 LINE L2 3250 3307 -6 316 260 338 7 chr1 75016483 75016637 -167647716 + MIR SINE MIR 2 206 -56 53 0 0 0 chr1 75016637 75016690 -167647663 + AT_rich Low_complexity Low_complexity 1 53 0 264 130 0 0 chr1 75017280 75017326 -167647027 + (TG)n Simple_repeat Simple_repeat 2 47 0 184 196 109 0 chr1 75017617 75017663 -167646690 - L2 LINE L2 0 3313 3263 1818 233 68 38 chr1 75020288 75020894 -167643459 - MLT1E3 LTR MaLR 0 624 1 1355 192 3 64 chr1 75021900 75022213 -167642140 - AluJb SINE Alu -8 294 1 277 372 83 8 chr1 75024820 75024941 -167639412 + L2 LINE L2 3141 3270 -2 419 327 82 18 chr1 75026071 75026291 -167638062 - LTR16C LTR ERVL 0 491 258 221 224 75 30 chr1 75026424 75026491 -167637862 - L2 LINE L2 -15 3298 3229 1319 87 0 0 chr1 75026819 75026992 -167637361 + AluY SINE Alu 115 287 -24 34 0 0 0 chr1 75026992 75027026 -167637327 + AT_rich Low_complexity Low_complexity 1 34 0 231 315 81 0 chr1 75027548 75027659 -167636694 - MIR SINE MIR -40 222 103 365 317 109 55 chr1 75028235 75028418 -167635935 + MIR3 SINE MIR 5 197 -11 213 132 0 0 chr1 75029378 75029416 -167634937 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 250 239 0 chr1 75031958 75032050 -167632303 + L2 LINE L2 3200 3313 0 606 356 43 0 chr1 75032080 75032310 -167632043 - MIR SINE MIR -20 242 3 205 203 0 101 chr1 75032522 75032601 -167631752 + T-rich Low_complexity Low_complexity 1 71 0 190 345 84 31 chr1 75032947 75033138 -167631215 - L2 LINE L2 -222 3050 2850 2083 117 0 3 chr1 75033307 75033597 -167630756 - AluSx SINE Alu -20 292 4 367 220 232 30 chr1 75033607 75033775 -167630578 + L2 LINE L2 2643 2844 -470 189 396 0 0 chr1 75034195 75034248 -167630105 - L2 LINE L2 -17 3255 3203 270 339 77 15 chr1 75034827 75034957 -167629396 + L2 LINE L2 3161 3298 -15 372 222 74 0 chr1 75035341 75035422 -167628931 + L2 LINE L2 3227 3313 0 322 350 86 43 chr1 75035533 75035696 -167628657 - L2 LINE L2 0 3272 3103 28 48 0 0 chr1 75036047 75036089 -167628264 + AT_rich Low_complexity Low_complexity 1 42 0 534 298 65 40 chr1 75037418 75037666 -167626687 - MIR SINE MIR 0 262 9 202 194 0 0 chr1 75040673 75040709 -167623644 + GA-rich Low_complexity Low_complexity 2 37 0 392 138 0 12 chr1 75040726 75040806 -167623547 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 29 0 0 0 chr1 75041142 75041171 -167623182 + AT_rich Low_complexity Low_complexity 1 29 0 268 349 9 0 chr1 75043067 75043173 -167621180 - MIR SINE MIR -96 166 60 215 243 14 0 chr1 75043271 75043341 -167621012 + (TA)n Simple_repeat Simple_repeat 1 71 0 1213 214 83 50 chr1 75043862 75044260 -167620093 - LTR37A LTR ERV1 -15 411 1 2116 110 14 0 chr1 75044274 75044565 -167619788 - AluSx SINE Alu -15 297 3 2043 139 72 17 chr1 75046227 75046572 -167617781 - THE1B LTR MaLR 0 364 1 10743 100 34 10 chr1 75046572 75047691 -167616662 - THE1B-int LTR MaLR 0 1580 413 1978 159 0 0 chr1 75047691 75048000 -167616353 + AluSx SINE Alu 1 309 0 10743 100 34 10 chr1 75048000 75048423 -167615930 - THE1B-int LTR MaLR -1167 413 1 2108 139 73 14 chr1 75048423 75048767 -167615586 - THE1B LTR MaLR 0 364 1 201 156 0 0 chr1 75048927 75048959 -167615394 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 183 156 0 62 chr1 75049123 75049187 -167615166 + A-rich Low_complexity Low_complexity 5 64 0 835 313 60 45 chr1 75050072 75050307 -167614046 + MER34 LTR ERV1 16 246 -296 2121 163 20 71 chr1 75050307 75050756 -167613597 - MSTB LTR MaLR 0 426 1 8163 187 20 26 chr1 75050757 75052412 -167611941 - MSTB-int LTR MaLR -1 1650 5 2111 148 20 93 chr1 75052421 75052874 -167611479 - MSTB LTR MaLR -4 422 3 835 313 60 45 chr1 75052874 75053138 -167611215 + MER34 LTR ERV1 253 535 -7 6855 109 18 0 chr1 75053161 75054129 -167610224 - THE1B-int LTR MaLR -595 985 1 225 0 0 0 chr1 75054141 75054166 -167610187 + (T)n Simple_repeat Simple_repeat 1 25 0 1886 142 23 43 chr1 75054166 75054518 -167609835 - THE1B LTR MaLR -19 345 1 15605 173 21 14 chr1 75054520 75056078 -167608275 - L1M1 LINE L1 -664 7060 5514 2610 36 0 7 chr1 75056078 75056381 -167607972 - AluY SINE Alu -10 301 1 15605 173 21 14 chr1 75056381 75057693 -167606660 - L1M1 LINE L1 -2210 5514 4213 1987 139 0 35 chr1 75057693 75058009 -167606344 + AluSq SINE Alu 1 305 -8 15605 173 21 14 chr1 75058009 75059439 -167604914 - L1M1 LINE L1 -3511 4213 2795 185 0 0 39 chr1 75059439 75059465 -167604888 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 15605 173 21 14 chr1 75059465 75061140 -167603213 - L1M1 LINE L1 -4929 2795 1035 23 54 0 0 chr1 75061313 75061350 -167603003 + AT_rich Low_complexity Low_complexity 1 37 0 203 169 51 0 chr1 75061628 75061687 -167602666 + (TTAA)n Simple_repeat Simple_repeat 3 64 0 30 45 0 0 chr1 75061798 75061842 -167602511 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr1 75062151 75062181 -167602172 + AT_rich Low_complexity Low_complexity 1 30 0 206 238 32 16 chr1 75062305 75062358 -167601995 - L2 LINE L2 0 3313 3257 2165 116 0 0 chr1 75062358 75062652 -167601701 - AluSg SINE Alu -16 294 1 2999 309 62 25 chr1 75062986 75063587 -167600766 + L2 LINE L2 1784 2361 -952 2315 173 21 9 chr1 75063587 75064008 -167600345 + MSTB LTR MaLR 1 426 0 2999 309 62 25 chr1 75064008 75064879 -167599474 + L2 LINE L2 2361 3311 -2 2335 95 3 0 chr1 75064922 75065218 -167599135 + AluY SINE Alu 1 297 -14 1674 180 44 46 chr1 75065689 75065938 -167598415 - MLT1A1 LTR MaLR 0 365 116 3449 58 5 16 chr1 75065938 75066371 -167597982 - SVA Other Other -1 1385 958 1674 180 44 46 chr1 75066371 75066487 -167597866 - MLT1A1 LTR MaLR -249 116 1 807 277 83 32 chr1 75066757 75067012 -167597341 - MLT1J1 LTR MaLR -52 394 113 1981 142 124 18 chr1 75067012 75067399 -167596954 - MSTA LTR MaLR 0 428 1 807 277 83 32 chr1 75067399 75067518 -167596835 - MLT1J1 LTR MaLR -333 113 1 333 275 39 82 chr1 75068224 75068406 -167595947 - MLT1J2 LTR MaLR -276 174 1 4305 108 13 11 chr1 75068731 75069342 -167595011 + LTR9 LTR ERV1 1 612 0 1191 245 48 18 chr1 75071422 75071753 -167592600 - MER58B DNA MER1_type 0 341 1 514 241 9 0 chr1 75071766 75071878 -167592475 - MER94 DNA DNA -21 113 1 23 0 0 0 chr1 75073723 75073746 -167590607 + AT_rich Low_complexity Low_complexity 1 23 0 2719 23 3 3 chr1 75073747 75074056 -167590297 + AluY SINE Alu 1 309 -2 538 299 102 5 chr1 75074408 75074595 -167589758 - MIR SINE MIR -56 206 2 1111 148 5 5 chr1 75075377 75075566 -167588787 + MLT1D LTR MaLR 317 505 0 222 261 0 0 chr1 75075623 75075669 -167588684 + polypurine Low_complexity Low_complexity 4 49 0 4139 148 39 22 chr1 75077126 75077932 -167586421 + L1MC1 LINE L1 5509 6327 -6 189 0 0 0 chr1 75078339 75078360 -167585993 + (A)n Simple_repeat Simple_repeat 1 21 0 357 24 0 0 chr1 75079081 75079123 -167585230 + (CA)n Simple_repeat Simple_repeat 1 42 0 361 253 253 35 chr1 75080076 75080274 -167584079 - MIR SINE MIR -15 247 7 749 246 65 84 chr1 75080466 75080787 -167583566 - MER5C DNA MER1_type 0 324 10 816 248 41 69 chr1 75083005 75083323 -167581030 + MER102b DNA MER1_type 1 309 -32 275 390 82 15 chr1 75083384 75083653 -167580700 + L3 LINE CR1 1191 1477 -100 21 36 0 0 chr1 75084100 75084128 -167580225 + AT_rich Low_complexity Low_complexity 1 28 0 6124 161 31 24 chr1 75084238 75085488 -167578865 + L1MA4A LINE L1 1426 2684 -4165 3498 120 6 6 chr1 75085493 75086027 -167578326 + L1PA15 LINE L1 5629 6162 -3 2735 133 11 2 chr1 75086027 75086463 -167577890 + L1MA4A LINE L1 6095 6534 -471 2230 90 0 26 chr1 75086468 75086778 -167577575 + AluSc SINE Alu 7 308 -1 732 344 51 52 chr1 75086819 75086900 -167577453 + L1PA13 LINE L1 17 97 -6690 186 118 0 0 chr1 75086900 75086934 -167577419 + (CAA)n Simple_repeat Simple_repeat 2 35 0 732 344 51 52 chr1 75086934 75087424 -167576929 + L1PA13 LINE L1 97 587 -6200 369 333 7 21 chr1 75087465 75087606 -167576747 + L1PA13 LINE L1 1373 1511 -5276 252 0 0 0 chr1 75087985 75088013 -167576340 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5768 152 30 18 chr1 75088165 75089805 -167574548 + L1PA16 LINE L1 4510 6165 -1 2539 145 14 42 chr1 75089808 75090304 -167574049 + L1MA4A LINE L1 5814 6295 -8 839 259 88 95 chr1 75090438 75091044 -167573309 + L1MC4 LINE L1 7239 7840 -202 6031 95 13 0 chr1 75091044 75092358 -167571995 - L1PA13 LINE L1 -1 6162 4847 839 259 88 95 chr1 75092358 75092532 -167571821 + L1MC4 LINE L1 7840 8014 -28 435 239 56 64 chr1 75092576 75092659 -167571694 + L1MC5 LINE L1 7649 7731 -230 1689 168 26 57 chr1 75092659 75093046 -167571307 - THE1C LTR MaLR 0 375 1 435 239 56 64 chr1 75093046 75093122 -167571231 + L1MC5 LINE L1 7731 7808 -153 1415 118 96 18 chr1 75093122 75093394 -167570959 + L1MA4 LINE L1 6002 6294 -6 435 239 56 64 chr1 75093394 75093467 -167570886 + L1MC5 LINE L1 7808 7880 -81 25 31 0 0 chr1 75094863 75094895 -167569458 + AT_rich Low_complexity Low_complexity 1 32 0 24 67 0 0 chr1 75095150 75095195 -167569158 + AT_rich Low_complexity Low_complexity 1 45 0 320 339 45 77 chr1 75095755 75096068 -167568285 - L2 LINE L2 0 3272 2970 1637 116 39 90 chr1 75096693 75097003 -167567350 + AluSx SINE Alu 2 295 -17 2151 136 0 0 chr1 75097381 75097691 -167566662 + AluY SINE Alu 1 310 -1 209 179 0 18 chr1 75098709 75098765 -167565588 + (TG)n Simple_repeat Simple_repeat 1 55 0 396 273 193 11 chr1 75098770 75099034 -167565319 + L1MC4 LINE L1 7700 8011 -31 2365 74 0 0 chr1 75099052 75099362 -167564991 - L1PA6 LINE L1 -1 6153 5844 917 202 28 19 chr1 75099380 75099593 -167564760 + MER61E LTR ERV1 317 531 -38 231 280 71 36 chr1 75099760 75099928 -167564425 - MER104 DNA Tc2 -4 176 3 1958 176 57 36 chr1 75099959 75100472 -167563881 + MLT2A2 LTR ERVL 8 554 0 492 273 73 81 chr1 75100987 75101175 -167563178 - MLT1H1 LTR MaLR -7 619 431 3316 179 48 29 chr1 75101175 75101889 -167562464 - LTR8A LTR ERV1 0 727 1 492 273 73 81 chr1 75101889 75102077 -167562276 - MLT1H1 LTR MaLR -195 431 225 3948 164 36 3 chr1 75102101 75102792 -167561561 + MER50 LTR ERV1 9 722 -12 6236 151 28 25 chr1 75102797 75103969 -167560384 + MER50-int LTR ERV1 31 1291 -5914 2004 128 7 3 chr1 75103969 75104273 -167560080 + AluY SINE Alu 1 305 -6 6236 151 28 25 chr1 75104273 75104835 -167559518 + MER50-int LTR ERV1 1291 1850 -5355 * 12521 195 50 40 chr1 75104831 75108482 -167555871 + MER50-int LTR ERV1 2885 7204 -1 4304 157 9 3 chr1 75108482 75109177 -167555176 + MER50 LTR ERV1 12 710 -24 180 143 0 0 chr1 75109778 75109820 -167554533 + (TAAAAA)n Simple_repeat Simple_repeat 4 45 0 300 333 67 31 chr1 75110232 75110457 -167553896 + L1MEd LINE L1 444 676 -5443 2011 238 27 23 chr1 75110512 75111025 -167553328 + HERVL74 LTR ERVL 74 588 -2968 * 2951 241 17 23 chr1 75111023 75111850 -167552503 + HERVL74 LTR ERVL 1334 2167 -1389 3582 227 75 16 chr1 75111895 75112917 -167551436 + HERVL74 LTR ERVL 2105 3416 -140 2694 252 79 74 chr1 75112917 75113941 -167550412 + MLT1A1-int LTR MaLR 707 1735 0 1821 181 14 30 chr1 75113941 75114312 -167550041 + MLT1A1 LTR MaLR 1 365 0 3400 100 67 105 chr1 75114416 75114669 -167549684 + L1M1 LINE L1 2919 3180 -4385 1955 128 0 50 chr1 75114669 75114989 -167549364 + AluSg SINE Alu 1 304 -6 3400 100 67 105 chr1 75114989 75115276 -167549077 + L1M1 LINE L1 3180 3423 -4142 2123 84 0 14 chr1 75115276 75115618 -167548735 + AluY SINE Alu 1 338 0 3400 100 67 105 chr1 75115618 75115854 -167548499 + L1M1 LINE L1 3423 3667 -3898 6608 202 15 3 chr1 75115856 75117260 -167547093 + L1M1 LINE L1 3938 5358 -2207 1870 129 10 13 chr1 75117261 75117570 -167546783 + L1MA2 LINE L1 5992 6299 -5 34 0 0 0 chr1 75117602 75117636 -167546717 + AT_rich Low_complexity Low_complexity 1 34 0 746 310 31 25 chr1 75117669 75118027 -167546326 + L1ME3 LINE L1 5557 5916 -246 24 103 0 0 chr1 75118258 75118345 -167546008 + AT_rich Low_complexity Low_complexity 1 87 0 581 150 0 20 chr1 75118399 75118499 -167545854 + L1PA7 LINE L1 6041 6138 -16 25 102 0 0 chr1 75118905 75118993 -167545360 + AT_rich Low_complexity Low_complexity 1 88 0 270 171 13 53 chr1 75120058 75120134 -167544219 + MLT1F1 LTR MaLR 494 566 -1 711 297 73 23 chr1 75120155 75120552 -167543801 + MLT1F1-int LTR MaLR 185 601 -770 2343 178 4 41 chr1 75120888 75121399 -167542954 - L1 LINE L1 -1178 4968 4477 6557 67 2 16 chr1 75121409 75121790 -167542563 - L1PA7 LINE L1 -4 6150 5765 2094 106 7 30 chr1 75121790 75122091 -167542262 - AluSc SINE Alu -15 294 1 6557 67 2 16 chr1 75122091 75122591 -167541762 - L1PA7 LINE L1 -389 5765 5281 * 7374 216 9 7 chr1 75122563 75124294 -167540059 - L1 LINE L1 -1644 4502 2768 3421 149 10 4 chr1 75124292 75125433 -167538920 + L1PB1 LINE L1 4951 6148 -3 * 309 191 0 0 chr1 75125439 75125507 -167538846 + L1M4 LINE L1 4477 4544 -1602 876 181 35 0 chr1 75125608 75125807 -167538546 - L1MA7 LINE L1 -5 6286 6081 612 119 10 10 chr1 75126420 75126521 -167537832 - L1MC1 LINE L1 -139 6194 6094 4478 206 51 5 chr1 75126542 75128364 -167535989 - L1MC1 LINE L1 -185 6148 4265 1601 231 6 29 chr1 75128372 75128719 -167535634 + MLT1F1 LTR MaLR 5 343 -224 1889 259 26 55 chr1 75128727 75129333 -167535020 - MLT1E LTR MaLR 0 593 5 3543 110 6 4 chr1 75129470 75129980 -167534373 + MER9 LTR ERVK 1 511 0 211 185 0 93 chr1 75130068 75130122 -167534231 - L2 LINE L2 -3 3310 3262 22 0 0 0 chr1 75130133 75130155 -167534198 + AT_rich Low_complexity Low_complexity 1 22 0 315 281 108 22 chr1 75130834 75130973 -167533380 + L1ME3A LINE L1 880 1030 -5604 312 315 130 43 chr1 75131024 75131208 -167533145 + L1ME3A LINE L1 921 1120 -5514 1034 97 0 0 chr1 75131208 75131342 -167533011 + AluSq/x SINE Alu 1 134 -178 2084 124 0 37 chr1 75131345 75131668 -167532685 + AluSx SINE Alu 2 312 0 806 265 53 30 chr1 75131712 75132142 -167532211 + L1ME3A LINE L1 1033 1472 -5070 * 945 260 128 31 chr1 75132111 75132519 -167531834 + L1ME3A LINE L1 1691 2058 -4767 198 0 0 0 chr1 75132519 75132541 -167531812 + (CCTAA)n Simple_repeat Simple_repeat 4 25 0 * 459 0 0 0 chr1 75132540 75132591 -167531762 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 945 260 128 31 chr1 75132541 75132690 -167531663 + L1ME3A LINE L1 2058 2247 -4578 203 125 25 0 chr1 75133052 75133092 -167531261 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1946 124 0 51 chr1 75134263 75134577 -167529776 + AluSq SINE Alu 1 298 -15 31 88 0 0 chr1 75134728 75134808 -167529545 + AT_rich Low_complexity Low_complexity 1 80 0 398 310 185 0 chr1 75134829 75135142 -167529211 + L1ME3A LINE L1 4681 5051 -1593 1218 276 89 39 chr1 75135576 75135720 -167528633 + L1ME3A LINE L1 5338 5473 -1195 1010 268 75 65 chr1 75135720 75136377 -167527976 + MLT2F LTR ERVL 1 663 0 1218 276 89 39 chr1 75136377 75137284 -167527069 + L1ME3A LINE L1 5473 6445 -223 850 291 76 41 chr1 75138182 75138526 -167525827 + MLT1J LTR MaLR 156 511 0 29 78 0 0 chr1 75138870 75138934 -167525419 + AT_rich Low_complexity Low_complexity 1 64 0 301 317 109 10 chr1 75138947 75139048 -167525305 - L2 LINE L2 -38 3234 3124 2052 92 52 0 chr1 75139735 75140006 -167524347 + AluSx SINE Alu 28 312 0 2032 117 163 5 chr1 75141076 75141444 -167522909 + MSTA LTR MaLR 3 428 0 206 229 188 62 chr1 75141510 75141606 -167522747 - L2 LINE L2 0 3313 3206 198 103 0 0 chr1 75143258 75143287 -167521066 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 191 380 0 14 chr1 75143288 75143359 -167520994 - L2 LINE L2 -12 3301 3232 860 254 82 4 chr1 75143491 75143723 -167520630 - MIR SINE MIR -10 252 3 229 244 0 0 chr1 75143843 75143888 -167520465 + GA-rich Low_complexity Low_complexity 4 48 0 983 247 109 38 chr1 75144157 75144224 -167520129 - MSTD LTR MaLR 0 396 335 1745 168 13 19 chr1 75144224 75144534 -167519819 - AluJb SINE Alu -4 308 1 983 247 109 38 chr1 75144534 75144834 -167519519 - MSTD LTR MaLR -61 335 3 244 264 0 0 chr1 75145436 75145489 -167518864 + L2 LINE L2 3219 3271 -1 187 326 52 41 chr1 75148956 75149128 -167515225 + L2 LINE L2 2808 2981 -291 413 299 49 7 chr1 75149484 75149531 -167514822 - MER117 DNA MER1_type -47 150 106 999 279 74 28 chr1 75149531 75149961 -167514392 - LTR16A LTR ERVL 0 450 1 413 299 49 7 chr1 75149961 75150057 -167514296 - MER117 DNA MER1_type -91 106 1 280 281 33 13 chr1 75150330 75150483 -167513870 + CT-rich Low_complexity Low_complexity 3 158 0 1252 202 54 22 chr1 75151551 75151645 -167512708 + MER58B DNA MER1_type 14 104 -2316 878 209 65 101 chr1 75151645 75151718 -167512635 - MSTA LTR MaLR 0 428 354 2017 136 3 0 chr1 75151718 75152005 -167512348 - AluSx SINE Alu -17 295 8 878 209 65 101 chr1 75152005 75152375 -167511978 - MSTA LTR MaLR -74 354 1 1252 202 54 22 chr1 75152375 75152597 -167511756 + MER58B DNA MER1_type 104 340 -1 2201 128 22 33 chr1 75153284 75153651 -167510702 - THE1B LTR MaLR 0 364 2 11865 88 6 8 chr1 75153652 75155236 -167509117 - THE1B-int LTR MaLR 0 1580 1 2292 115 27 30 chr1 75155236 75155601 -167508752 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr1 75155840 75155871 -167508482 + AT_rich Low_complexity Low_complexity 1 31 0 2694 182 140 11 chr1 75155902 75156551 -167507802 - L1MB4 LINE L1 -1 6179 5447 22 0 0 0 chr1 75156591 75156613 -167507740 + AT_rich Low_complexity Low_complexity 1 22 0 463 335 121 46 chr1 75156786 75156865 -167507488 + L1MC4a LINE L1 5363 5435 -735 1987 138 0 32 chr1 75156865 75157176 -167507177 - AluSx SINE Alu -11 301 1 463 335 121 46 chr1 75157176 75157616 -167506737 + L1MC4a LINE L1 5435 5921 -249 304 300 21 7 chr1 75157734 75157874 -167506479 + A-rich Low_complexity Low_complexity 2 143 0 188 98 0 49 chr1 75158075 75158116 -167506237 + (TAAAAA)n Simple_repeat Simple_repeat 1 39 0 402 242 23 68 chr1 75158186 75158318 -167506035 - L2 LINE L2 -8 3305 3180 987 276 104 25 chr1 75158454 75159444 -167504909 + L1P5 LINE L1 4415 5485 -671 21 0 0 0 chr1 75159451 75159472 -167504881 + AT_rich Low_complexity Low_complexity 1 21 0 820 289 80 48 chr1 75159642 75160078 -167504275 + MLT1J2 LTR MaLR 1 450 0 198 200 67 0 chr1 75160280 75160325 -167504028 + MIR SINE MIR 91 138 -124 1726 235 77 29 chr1 75160325 75160909 -167503444 - HsTC2 DNA Tc2 -3 1895 1284 5734 109 11 37 chr1 75160912 75162445 -167501908 + L1PA15 LINE L1 4658 6165 0 413 223 155 20 chr1 75162524 75162672 -167501681 - MER99 DNA DNA -1 827 660 * 1761 169 21 0 chr1 75162666 75163003 -167501350 - MER99 DNA DNA -293 535 192 28 0 0 0 chr1 75163157 75163185 -167501168 + AT_rich Low_complexity Low_complexity 1 28 0 43 56 0 11 chr1 75163367 75163400 -167500953 + AT_rich Low_complexity Low_complexity 1 33 -55 2565 55 0 0 chr1 75163400 75163710 -167500643 + AluY SINE Alu 1 310 -1 43 56 0 11 chr1 75163710 75163765 -167500588 + AT_rich Low_complexity Low_complexity 33 88 0 461 240 20 0 chr1 75163980 75164080 -167500273 - MER99 DNA DNA -725 103 2 318 252 0 58 chr1 75164080 75164182 -167500171 - HsTC2 DNA Tc2 -1800 98 3 28 0 0 0 chr1 75164466 75164494 -167499859 + AT_rich Low_complexity Low_complexity 1 28 0 231 259 207 15 chr1 75165041 75165176 -167499177 + MIR SINE MIR 52 212 -50 22 0 0 0 chr1 75165317 75165339 -167499014 + AT_rich Low_complexity Low_complexity 1 22 0 193 244 22 0 chr1 75166675 75166720 -167497633 + L2 LINE L2 3227 3272 0 320 371 24 34 chr1 75166887 75167092 -167497261 + MIR3 SINE MIR 2 204 -4 22 0 0 0 chr1 75167829 75167851 -167496502 + AT_rich Low_complexity Low_complexity 1 22 0 1832 139 32 0 chr1 75168142 75168422 -167495931 + AluSx SINE Alu 6 294 -18 190 392 81 14 chr1 75168550 75168698 -167495655 - L2 LINE L2 -225 3047 2890 2548 118 3 11 chr1 75168755 75169128 -167495225 - THE1C LTR MaLR -5 370 1 2604 11 0 0 chr1 75169372 75169654 -167494699 + AluYb8 SINE Alu 37 318 0 314 345 36 67 chr1 75169754 75169948 -167494405 + HAL1 LINE L1 1 188 -2319 1440 195 31 0 chr1 75170061 75170348 -167494005 + MLT1B LTR MaLR 89 384 -6 397 359 53 50 chr1 75170398 75170716 -167493637 - L2 LINE L2 -171 3142 2824 273 98 0 0 chr1 75171254 75171295 -167493058 + (TC)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr1 75171944 75171965 -167492388 + (A)n Simple_repeat Simple_repeat 1 21 0 2238 92 3 16 chr1 75171974 75172288 -167492065 + AluY SINE Alu 2 311 0 472 285 174 3 chr1 75174021 75174137 -167490216 + LTR33A LTR ERVL 111 206 -317 2103 209 151 56 chr1 75174137 75174891 -167489462 + LTR1B LTR ERV1 1 826 0 472 285 174 3 chr1 75174891 75175079 -167489274 + LTR33A LTR ERVL 206 467 -56 496 273 84 13 chr1 75175151 75175305 -167489048 - MIR SINE MIR -50 212 48 221 292 92 0 chr1 75176912 75176977 -167487376 - L2 LINE L2 -2 3311 3241 329 237 35 9 chr1 75177019 75177133 -167487220 + (TA)n Simple_repeat Simple_repeat 1 117 0 410 314 73 52 chr1 75177286 75177671 -167486682 + MLT1K LTR MaLR 194 586 -2 200 336 164 0 chr1 75178020 75178136 -167486217 - L2 LINE L2 -4 3309 3175 1157 329 60 33 chr1 75178184 75179008 -167485345 + L2 LINE L2 2458 3313 0 2119 109 13 0 chr1 75179463 75179774 -167484579 + L1PA12 LINE L1 5853 6167 -1 251 239 211 9 chr1 75179997 75180106 -167484247 - MIR SINE MIR -11 251 121 221 250 0 0 chr1 75180530 75180578 -167483775 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 446 281 85 96 chr1 75183532 75183792 -167480561 + MLT1J LTR MaLR 18 274 -237 272 259 112 9 chr1 75183871 75183987 -167480366 + MLT1J LTR MaLR 384 511 0 3581 143 33 7 chr1 75184102 75184712 -167479641 + Tigger1 DNA MER2_type 1788 2413 -5 321 121 0 35 chr1 75184719 75184777 -167479576 + MLT2B1 LTR ERVL 462 517 -3 298 42 42 0 chr1 75185406 75185454 -167478899 + (TA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr1 75185456 75185477 -167478876 + AT_rich Low_complexity Low_complexity 1 21 0 302 320 0 39 chr1 75185477 75185605 -167478748 - L1MC4 LINE L1 -1337 6705 6583 277 76 76 0 chr1 75185605 75185671 -167478682 + (TA)n Simple_repeat Simple_repeat 2 72 0 352 354 7 62 chr1 75186580 75186724 -167477629 - L2 LINE L2 -40 3232 3097 209 283 33 17 chr1 75186732 75186792 -167477561 + MIR SINE MIR 10 70 -192 26 0 0 0 chr1 75186963 75186989 -167477364 + AT_rich Low_complexity Low_complexity 1 26 0 609 143 0 0 chr1 75188829 75188934 -167475419 + L1MA5A LINE L1 6191 6295 -2 317 259 7 109 chr1 75189182 75189329 -167475024 + L2 LINE L2 3182 3313 0 516 308 14 0 chr1 75189524 75189667 -167474686 + MER20B DNA MER1_type 141 285 -498 345 247 47 35 chr1 75189688 75189773 -167474580 + MLT1J LTR MaLR 367 452 -141 1304 108 16 5 chr1 75189773 75189959 -167474394 - MSTA LTR MaLR 0 428 241 295 77 0 0 chr1 75189962 75190001 -167474352 + MLT1J LTR MaLR 584 622 -2 226 303 139 65 chr1 75190151 75190567 -167473786 - L2 LINE L2 -974 2340 1894 182 351 88 0 chr1 75190789 75190903 -167473450 - L3 LINE CR1 -1052 525 402 287 286 26 0 chr1 75191727 75191804 -167472549 + L2 LINE L2 3184 3262 -10 462 287 153 0 chr1 75192776 75192926 -167471427 - MIR SINE MIR -73 189 17 654 221 111 5 chr1 75193122 75193312 -167471041 - MER69 DNA AcHobo -24 2502 2293 503 237 156 55 chr1 75193387 75193599 -167470754 - MER69 DNA AcHobo -433 2093 1856 2855 173 12 46 chr1 75193599 75194167 -167470186 - MER34C LTR ERV1 0 585 37 1155 219 41 51 chr1 75194188 75194580 -167469773 - MER69 DNA AcHobo -688 1838 1451 32 57 0 0 chr1 75196218 75196271 -167468082 + AT_rich Low_complexity Low_complexity 1 53 0 1285 303 123 6 chr1 75196291 75196770 -167467583 - MER69 DNA AcHobo -637 589 55 2109 124 141 8 chr1 75196833 75197187 -167467166 - MSTA LTR MaLR 0 428 28 3117 173 44 39 chr1 75197187 75197827 -167466526 + LTR48B LTR ERV1 2 644 0 483 341 56 16 chr1 75197851 75198103 -167466250 + L2 LINE L2 2440 2701 -613 470 337 19 30 chr1 75198167 75198434 -167465919 + L2 LINE L2 3041 3304 -9 1969 153 76 17 chr1 75198817 75199171 -167465182 + THE1C LTR MaLR 1 375 0 472 290 45 23 chr1 75199385 75199561 -167464792 - MIR SINE MIR -64 198 19 1544 233 102 25 chr1 75199563 75199652 -167464701 - MER63B DNA MER1_type -626 436 355 1555 177 196 33 chr1 75199652 75200020 -167464333 - MSTC LTR MaLR 0 428 1 1544 233 102 25 chr1 75200020 75200334 -167464019 - MER63B DNA MER1_type -707 355 2 995 190 137 98 chr1 75200739 75200874 -167463479 + MSTC LTR MaLR 1 129 -299 1338 212 7 44 chr1 75200874 75201167 -167463186 + AluJo SINE Alu 3 284 -28 995 190 137 98 chr1 75201167 75201441 -167462912 + MSTC LTR MaLR 129 426 -2 371 233 203 8 chr1 75202175 75202308 -167462045 + MER103 DNA DNA 8 166 0 610 228 176 20 chr1 75202562 75202817 -167461536 + MER5C DNA MER1_type 30 324 0 479 265 79 51 chr1 75202972 75203187 -167461166 + LTR33 LTR ERVL 249 469 -52 438 331 95 21 chr1 75204764 75205006 -167459347 + MIR SINE MIR 2 261 -1 489 262 171 21 chr1 75205022 75205209 -167459144 - MER58C DNA MER1_type 0 215 1 23 78 0 0 chr1 75206383 75206434 -167457919 + AT_rich Low_complexity Low_complexity 1 51 0 2174 90 4 0 chr1 75206945 75207222 -167457131 + AluSp SINE Alu 28 305 -8 365 282 33 18 chr1 75207470 75207606 -167456747 + L1MC4a LINE L1 6681 6867 -1007 332 260 13 0 chr1 75208269 75208346 -167456007 + MER63 DNA MER1_type 674 751 -85 248 282 77 0 chr1 75208347 75208425 -167455928 + MER63 DNA MER1_type 978 1061 0 237 200 0 35 chr1 75208676 75208761 -167455592 + A-rich Low_complexity Low_complexity 3 84 0 268 213 13 53 chr1 75208894 75208969 -167455384 + L2 LINE L2 3242 3313 0 186 103 0 0 chr1 75209364 75209393 -167454960 + (TG)n Simple_repeat Simple_repeat 2 30 0 561 265 0 8 chr1 75209394 75209511 -167454842 - FLAM_A SINE Alu -17 116 1 408 349 77 63 chr1 75210796 75210823 -167453530 - L2 LINE L2 -4 3268 3243 504 48 0 0 chr1 75210823 75210886 -167453467 + (TG)n Simple_repeat Simple_repeat 2 64 0 408 349 77 63 chr1 75210886 75211429 -167452924 - L2 LINE L2 -29 3243 2671 2020 115 0 0 chr1 75212025 75212295 -167452058 - AluY SINE Alu -13 298 29 548 226 183 0 chr1 75212295 75212432 -167451921 - MLT1J LTR MaLR -330 181 20 318 294 183 16 chr1 75212881 75213007 -167451346 - MER5A DNA MER1_type -6 183 37 317 70 26 0 chr1 75213094 75213146 -167451207 - MLT2B3 LTR ERVL 0 554 464 1557 228 8 34 chr1 75213178 75213533 -167450820 - MER4D LTR ERV1 0 903 558 228 191 0 0 chr1 75213561 75213603 -167450750 - MER4D LTR ERV1 -592 280 239 509 202 37 0 chr1 75213736 75213845 -167450508 - MLT1J2 LTR MaLR -275 175 63 207 318 0 56 chr1 75213922 75213962 -167450391 + MIR SINE MIR 43 84 -124 2514 155 23 3 chr1 75213962 75214350 -167450003 + MSTD LTR MaLR 1 396 0 207 318 0 56 chr1 75214350 75214416 -167449937 + MIR SINE MIR 84 143 -65 210 176 0 0 chr1 75216118 75216152 -167448201 - L2 LINE L2 -665 2649 2616 319 242 0 0 chr1 75216590 75216656 -167447697 + MIR3 SINE MIR 110 175 -33 222 211 0 0 chr1 75217221 75217273 -167447080 + (CA)n Simple_repeat Simple_repeat 2 53 0 183 272 80 88 chr1 75217415 75217540 -167446813 - L2 LINE L2 -9 3263 3140 201 293 53 40 chr1 75218240 75218315 -167446038 - L2 LINE L2 -190 3082 3007 246 252 243 0 chr1 75218753 75218856 -167445497 + L2 LINE L2 3145 3272 0 863 178 0 20 chr1 75219196 75219342 -167445011 + AluJb SINE Alu 139 281 -31 333 0 0 0 chr1 75219343 75219380 -167444973 + (CA)n Simple_repeat Simple_repeat 2 38 0 564 269 110 57 chr1 75219453 75219717 -167444636 + MLT1K LTR MaLR 40 317 -271 698 158 62 27 chr1 75219731 75219877 -167444476 - MLT1B LTR MaLR 0 390 240 585 142 28 75 chr1 75219915 75220021 -167444332 - AluJo SINE Alu -127 185 85 1341 186 66 30 chr1 75220025 75220358 -167443995 - MLT1C LTR MaLR -122 345 1 810 171 0 0 chr1 75220655 75220778 -167443575 + FLAM_C SINE Alu 3 125 -18 1897 235 62 24 chr1 75221047 75221595 -167442758 - L1ME2 LINE L1 -1 6163 5595 750 268 211 46 chr1 75222365 75222753 -167441600 - MLT1G1 LTR MaLR 0 595 144 393 42 0 0 chr1 75223667 75223715 -167440638 + MER41A LTR ERV1 397 444 -110 2065 130 0 3 chr1 75223728 75224020 -167440333 + AluSx SINE Alu 1 291 -21 356 335 60 79 chr1 75224234 75224329 -167440024 - L3 LINE CR1 -302 1275 1180 896 138 8 0 chr1 75224329 75224452 -167439901 - FLAM_A SINE Alu -9 124 1 356 335 60 79 chr1 75224452 75224672 -167439681 - L3 LINE CR1 -397 1180 966 212 313 62 38 chr1 75224678 75224758 -167439595 - L3 LINE CR1 -931 646 565 362 270 60 94 chr1 75224874 75225141 -167439212 - LTR67 LTR ERVL -297 260 3 274 266 38 25 chr1 75225167 75225246 -167439107 - L3 LINE CR1 -1052 525 446 1934 115 28 47 chr1 75225464 75225785 -167438568 - MER7A DNA MER2_type -33 313 1 2272 110 0 0 chr1 75225854 75226146 -167438207 - AluSq SINE Alu -21 292 1 827 154 148 13 chr1 75226247 75226396 -167437957 + FRAM SINE Alu 1 166 -10 242 340 57 6 chr1 75226816 75226975 -167437378 - MIR3 SINE MIR -6 202 36 242 253 25 25 chr1 75229476 75229555 -167434798 - LTR67 LTR ERVL -10 547 469 1113 236 51 27 chr1 75229556 75229891 -167434462 - LTR16C LTR ERVL 0 491 149 1535 82 14 45 chr1 75230203 75230423 -167433930 + AluSg/x SINE Alu 87 299 -11 346 297 110 0 chr1 75230461 75230579 -167433774 + L2 LINE L2 3183 3313 0 205 342 0 0 chr1 75231130 75231206 -167433147 + (TG)n Simple_repeat Simple_repeat 2 77 0 455 300 42 19 chr1 75231626 75231811 -167432542 + MIR SINE MIR 43 239 -23 2363 89 3 0 chr1 75233164 75233468 -167430885 - AluSx SINE Alu -6 306 2 229 59 0 0 chr1 75233468 75233502 -167430851 - Alu SINE Alu -167 134 101 629 214 50 7 chr1 75233849 75233989 -167430364 - MER5B DNA MER1_type -32 146 1 1248 229 121 24 chr1 75234111 75234617 -167429736 - L1M4 LINE L1 -2511 3635 3081 695 154 0 0 chr1 75234617 75234721 -167429632 - FRAM SINE Alu 0 176 73 281 156 22 0 chr1 75236922 75236967 -167427386 - Alu SINE Alu -257 46 1 1581 101 14 9 chr1 75237141 75237359 -167426994 - AluSg/x SINE Alu -12 298 80 258 211 147 11 chr1 75237550 75237640 -167426713 + MIR SINE MIR 40 142 -66 231 213 53 40 chr1 75237640 75237715 -167426638 - MER91 DNA MER1_type 0 140 65 351 272 18 18 chr1 75238018 75238132 -167426221 - MLT1K LTR MaLR -324 264 151 443 286 16 59 chr1 75238664 75238817 -167425536 - MIR SINE MIR -66 142 10 463 270 34 89 chr1 75239255 75239562 -167424791 - L1MEd LINE L1 -1073 1417 1049 1840 117 95 0 chr1 75239562 75239836 -167424517 - AluSx SINE Alu -12 300 1 463 270 34 89 chr1 75239836 75239938 -167424415 - L1MEd LINE L1 -1441 1049 943 2056 148 0 7 chr1 75239976 75240274 -167424079 - AluJo SINE Alu -16 296 1 1754 129 11 4 chr1 75240403 75240674 -167423679 - MER34B LTR ERV1 0 565 293 231 143 0 48 chr1 75240775 75240817 -167423536 + Alu SINE Alu 117 156 -10 714 301 52 30 chr1 75240821 75241229 -167423124 + L1ME LINE L1 5192 5616 -554 245 297 62 51 chr1 75241235 75241430 -167422923 + L1ME LINE L1 5670 5866 -298 1948 173 48 94 chr1 75241435 75241937 -167422416 + L1MC4 LINE L1 6760 7238 -804 23 0 0 0 chr1 75241961 75241984 -167422369 + AT_rich Low_complexity Low_complexity 1 23 0 2165 129 0 3 chr1 75242042 75242353 -167422000 - AluSx SINE Alu -2 310 1 411 328 64 30 chr1 75242368 75242633 -167421720 - L3 LINE CR1 -1055 522 249 2150 85 29 0 chr1 75243408 75243689 -167420664 - AluSc SINE Alu -10 299 11 2457 63 7 7 chr1 75243699 75243998 -167420355 - AluSg SINE Alu -11 299 1 250 205 14 14 chr1 75244327 75244398 -167419955 - MLT1K LTR MaLR -342 246 140 21 36 0 0 chr1 75244608 75244636 -167419717 + AT_rich Low_complexity Low_complexity 1 28 0 461 278 104 26 chr1 75244977 75245207 -167419146 + MIR SINE MIR 14 261 -1 2117 92 0 11 chr1 75245538 75245819 -167418534 - AluSq SINE Alu 0 313 36 1680 174 32 0 chr1 75245828 75246110 -167418243 - AluJb SINE Alu -21 291 1 427 264 7 101 chr1 75246149 75246297 -167418056 + L2 LINE L2 3139 3272 0 429 132 0 15 chr1 75246344 75246412 -167417941 + MER5A DNA MER1_type 1 67 -122 2301 98 0 0 chr1 75246416 75246712 -167417641 - AluSg SINE Alu -14 296 1 307 197 16 0 chr1 75247802 75247863 -167416490 - L1ME LINE L1 -596 5566 5505 337 233 100 87 chr1 75247916 75248066 -167416287 - L1ME4a LINE L1 -183 6356 6205 442 152 13 0 chr1 75248217 75248296 -167416057 + MADE1 DNA Mariner 1 80 0 2654 240 60 29 chr1 75248364 75249322 -167415031 - L1ME4a LINE L1 -1648 4916 3929 808 246 50 11 chr1 75249314 75249621 -167414732 - L1MEc LINE L1 -4088 2521 2195 * 692 161 5 0 chr1 75249621 75249762 -167414591 - L1M3 LINE L1 -492 5691 5546 7394 32 4 7 chr1 75249902 75250995 -167413358 + L1PA3 LINE L1 5060 6151 -4 440 287 32 45 chr1 75251198 75251355 -167412998 + MIR SINE MIR 33 187 -75 274 265 140 15 chr1 75252206 75252342 -167412011 - L2 LINE L2 -13 3300 3148 802 154 7 0 chr1 75253165 75253314 -167411039 - L1M1 LINE L1 -5503 2062 1913 4297 131 11 24 chr1 75253314 75254034 -167410319 + MER50 LTR ERV1 1 711 -23 9113 175 26 12 chr1 75254039 75255719 -167408634 - L1M1 LINE L1 -5653 1912 210 3113 241 29 81 chr1 75255880 75257139 -167407214 - L1MEc LINE L1 -4851 1194 1 1382 137 14 63 chr1 75257399 75257684 -167406669 - LTR1B LTR ERV1 -555 271 1 231 235 0 0 chr1 75258268 75258319 -167406034 + (TA)n Simple_repeat Simple_repeat 2 52 0 265 287 20 0 chr1 75258337 75258438 -167405915 + MER110 LTR ERV1 367 469 -22 357 258 49 83 chr1 75258626 75258817 -167405536 - MIR SINE MIR -71 137 4 286 119 0 0 chr1 75260155 75260197 -167404156 - MLT2B1 LTR ERVL 0 515 474 369 0 0 0 chr1 75260197 75260238 -167404115 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 118 0 0 chr1 75260242 75260276 -167404077 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1544 229 76 20 chr1 75260324 75260774 -167403579 - MLT2B1 LTR ERVL -40 480 6 1424 144 35 51 chr1 75260774 75260938 -167403415 - ERVL-B1 LTR ERVL -5 5759 5599 2180 113 3 0 chr1 75260938 75261247 -167403106 - AluSq SINE Alu 0 310 1 1424 144 35 51 chr1 75261247 75261393 -167402960 - ERVL-B1 LTR ERVL -165 5599 5452 1715 149 69 36 chr1 75261394 75261757 -167402596 + THE1C LTR MaLR 1 375 0 351 44 0 0 chr1 75261760 75261805 -167402548 + (CA)n Simple_repeat Simple_repeat 2 46 0 1651 185 7 79 chr1 75261843 75262259 -167402094 - MLT1B LTR MaLR -4 386 1 1000 258 27 23 chr1 75262339 75262595 -167401758 + MIR SINE MIR 2 258 -4 22 35 0 0 chr1 75263060 75263089 -167401264 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 75263279 75263307 -167401046 + AT_rich Low_complexity Low_complexity 1 28 0 410 145 0 0 chr1 75263409 75263471 -167400882 - MIR SINE MIR -108 154 93 207 0 0 0 chr1 75264233 75264256 -167400097 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 255 179 0 36 chr1 75264337 75264393 -167399960 + CT-rich Low_complexity Low_complexity 3 56 0 302 331 30 0 chr1 75265355 75265488 -167398865 + LTR16A1 LTR ERVL 319 455 -2 201 121 0 0 chr1 75265797 75265830 -167398523 + (TTCTCC)n Simple_repeat Simple_repeat 3 35 0 299 306 70 26 chr1 75265831 75266007 -167398346 - MIR3 SINE MIR -44 218 38 778 293 82 49 chr1 75267983 75268116 -167396237 - L2 LINE L2 -2 3311 3184 1941 133 80 14 chr1 75268116 75268468 -167395885 - THE1C LTR MaLR 0 375 1 778 293 82 49 chr1 75268468 75268950 -167395403 - L2 LINE L2 -129 3184 2670 653 181 21 28 chr1 75269168 75269312 -167395041 + AluJo SINE Alu 1 143 -169 1046 188 54 0 chr1 75269430 75269654 -167394699 - L1 LINE L1 -1137 6428 6193 4088 79 35 8 chr1 75269654 75270660 -167393693 + MER11A LTR ERVK 1 1266 0 7575 190 67 7 chr1 75270660 75272548 -167391805 - L1 LINE L1 -1367 6198 4197 333 82 0 0 chr1 75272686 75272735 -167391618 + (CA)n Simple_repeat Simple_repeat 2 50 0 315 252 48 54 chr1 75272735 75272884 -167391469 - LTR33A LTR ERVL -362 183 38 188 125 54 18 chr1 75274261 75274317 -167390036 + GA-rich Low_complexity Low_complexity 3 60 0 1751 135 40 43 chr1 75274812 75275115 -167389238 - AluSx SINE Alu -10 302 1 263 324 76 29 chr1 75275155 75275260 -167389093 + L2 LINE L2 3149 3258 -14 802 188 50 19 chr1 75275383 75275644 -167388709 - L1 LINE L1 -3982 3583 3315 16150 65 11 2 chr1 75275675 75277949 -167386404 - L1P LINE L1 -2658 3488 1196 234 276 41 31 chr1 75278051 75278143 -167386210 + L2 LINE L2 3214 3307 -1 180 111 0 0 chr1 75278143 75278170 -167386183 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 552 344 37 18 chr1 75278654 75278872 -167385481 - MIR SINE MIR -21 241 20 229 231 19 0 chr1 75279586 75279638 -167384715 - L2 LINE L2 -16 3256 3204 13474 44 70 4 chr1 75280158 75282025 -167382328 - L1P LINE L1 -3540 2606 617 752 42 0 0 chr1 75282019 75282115 -167382238 - L1P LINE L1 -6048 98 3 * 425 258 143 16 chr1 75282630 75282812 -167381541 + L1MC4 LINE L1 7377 7581 -461 2866 142 36 103 chr1 75282901 75283020 -167381333 + L1MA9 LINE L1 5576 5701 -611 3445 99 8 6 chr1 75283020 75283524 -167380829 + L1PB2 LINE L1 5647 6151 0 2866 142 36 103 chr1 75283524 75284135 -167380218 + L1MA9 LINE L1 5701 6257 -55 214 344 16 0 chr1 75285998 75286059 -167378294 + MIR SINE MIR 50 111 -151 2334 68 3 40 chr1 75286103 75286424 -167377929 - AluY SINE Alu -2 309 1 383 322 37 29 chr1 75286711 75286953 -167377400 - MER34 LTR ERV1 -278 264 21 225 289 185 7 chr1 75286960 75287095 -167377258 + MIR SINE MIR 104 262 0 271 337 79 17 chr1 75287672 75287850 -167376503 + MER5A DNA MER1_type 1 189 0 900 268 95 19 chr1 75288355 75288680 -167375673 + MLT1I LTR MaLR 18 367 -42 1784 172 14 0 chr1 75289870 75290160 -167374193 + AluJo SINE Alu 1 294 -18 238 339 55 46 chr1 75290527 75290636 -167373717 + MIR SINE MIR 29 138 -124 2123 103 0 0 chr1 75290897 75291170 -167373183 - AluSx SINE Alu -39 273 1 295 269 65 19 chr1 75291175 75291283 -167373070 - MLT1C LTR MaLR -339 210 98 302 240 40 20 chr1 75291367 75291467 -167372886 + MIR SINE MIR 158 259 -3 203 327 64 36 chr1 75291777 75291887 -167372466 - MIR SINE MIR -63 145 33 205 204 0 45 chr1 75292191 75292235 -167372118 + L3b LINE CR1 1289 1330 -253 1095 266 129 20 chr1 75293539 75293982 -167370371 + LTR16C LTR ERVL 1 491 0 23 0 0 0 chr1 75295320 75295343 -167369010 + AT_rich Low_complexity Low_complexity 1 23 0 236 77 26 0 chr1 75295710 75295749 -167368604 + (GA)n Simple_repeat Simple_repeat 2 41 0 251 71 24 0 chr1 75296126 75296168 -167368185 + (CA)n Simple_repeat Simple_repeat 2 44 0 2294 101 0 3 chr1 75297951 75298249 -167366104 - AluSq SINE Alu -16 297 1 269 337 92 0 chr1 75298910 75299008 -167365345 + MIR3 SINE MIR 77 183 -25 423 368 7 0 chr1 75301993 75302129 -167362224 - L2 LINE L2 0 3272 3136 286 319 21 95 chr1 75302236 75302477 -167361876 + L2 LINE L2 3031 3253 -19 253 188 21 0 chr1 75302797 75302845 -167361508 - MLT1K LTR MaLR -8 580 532 442 214 17 17 chr1 75303021 75303138 -167361215 - MLT1C LTR MaLR -345 122 6 1881 298 136 18 chr1 75303667 75304289 -167360064 - L2 LINE L2 0 3313 2766 2521 46 3 7 chr1 75304289 75304595 -167359758 + AluY SINE Alu 1 305 -6 1881 298 136 18 chr1 75304595 75304810 -167359543 - L2 LINE L2 -547 2766 2578 6988 50 16 11 chr1 75304810 75306064 -167358289 + L1PA5 LINE L1 4896 6154 0 1881 298 136 18 chr1 75306064 75306278 -167358075 - L2 LINE L2 -735 2578 2124 429 278 38 0 chr1 75306280 75306413 -167357940 - MIR SINE MIR -84 178 41 199 286 0 0 chr1 75306552 75306594 -167357759 - MER5A DNA MER1_type -36 153 112 228 350 82 0 chr1 75307028 75307125 -167357228 + MER5A DNA MER1_type 60 164 -25 3245 155 2 6 chr1 75307257 75307786 -167356567 - MER1A DNA MER1_type -2 527 1 1249 172 83 13 chr1 75307823 75308125 -167356228 + MER33 DNA MER1_type 2 324 0 357 336 48 14 chr1 75308218 75308364 -167355989 + L2 LINE L2 3102 3252 -20 225 266 89 13 chr1 75308383 75308462 -167355891 - MIR SINE MIR -108 100 16 246 242 42 32 chr1 75309722 75309817 -167354536 - MER69 DNA AcHobo -560 1966 1871 2173 180 21 55 chr1 75309821 75310389 -167353964 - MER34C LTR ERV1 0 585 37 986 219 41 51 chr1 75310410 75310802 -167353551 - MER69 DNA AcHobo -688 1838 1451 14859 42 2 1 chr1 75311884 75313851 -167350502 + L1P LINE L1 2503 4470 -1676 6671 195 30 18 chr1 75313951 75314215 -167350138 - L1M1 LINE L1 -4065 1263 1004 270 0 0 0 chr1 75314215 75314245 -167350108 + (TG)n Simple_repeat Simple_repeat 2 31 0 6671 195 30 18 chr1 75314245 75315998 -167348355 - L1M1 LINE L1 -4324 1004 2 245 322 57 52 chr1 75316379 75316590 -167347763 - MIR SINE MIR -34 228 17 1331 278 114 48 chr1 75317479 75318171 -167346182 + MER69 DNA AcHobo 4 741 -485 1082 250 165 8 chr1 75318341 75318734 -167345619 + L1M4 LINE L1 1 1564 -5466 757 211 18 9 chr1 75318838 75319056 -167345297 - L1 LINE L1 -2616 3530 3311 1368 176 68 52 chr1 75319056 75319425 -167344928 + THE1C LTR MaLR 1 375 0 9236 139 28 42 chr1 75319428 75321028 -167343325 + THE1C-int LTR MaLR 4 1580 0 316 224 56 29 chr1 75321028 75321152 -167343201 + THE1C LTR MaLR 1 120 -245 6601 124 57 17 chr1 75321273 75322387 -167341966 - THE1C-int LTR MaLR -422 1158 1 2644 114 14 0 chr1 75322388 75322757 -167341596 - THE1C LTR MaLR -1 374 1 245 175 35 0 chr1 75322757 75322814 -167341539 + L2 LINE L2 3107 3165 -148 4076 156 103 0 chr1 75322877 75323626 -167340727 - LTR1B LTR ERV1 0 826 1 488 214 84 9 chr1 75323877 75324092 -167340261 - Charlie2 DNA MER1_type -493 2369 2139 2595 19 0 0 chr1 75324092 75324414 -167339939 - L1PA5 LINE L1 -3307 2839 2518 21009 34 0 0 chr1 75324414 75327732 -167336621 + L1PA5 LINE L1 2826 6149 -5 2192 98 13 3 chr1 75378858 75379164 -167285189 + AluSc SINE Alu 1 309 0 326 205 64 13 chr1 75379164 75379242 -167285111 + L1M4 LINE L1 3912 3993 -3113 421 228 221 0 chr1 75379306 75379464 -167284889 + L1MEc LINE L1 764 956 -6182 814 174 39 39 chr1 75379592 75379770 -167284583 + AluJb SINE Alu 130 307 -5 1056 180 199 13 chr1 75381142 75381495 -167282858 + MER39 LTR ERV1 1 424 -229 758 171 76 128 chr1 75381675 75381945 -167282408 - L1M4 LINE L1 -1098 5048 4794 1088 201 114 50 chr1 75381945 75382288 -167282065 - MLT1A1 LTR MaLR 0 365 1 758 171 76 128 chr1 75382288 75382321 -167282032 - L1M4 LINE L1 -1352 4794 4761 2177 102 3 0 chr1 75382750 75383035 -167281318 + AluY SINE Alu 26 311 0 293 230 68 68 chr1 75383395 75383543 -167280810 + L1MEc LINE L1 1261 1408 -5451 454 267 42 0 chr1 75383758 75383878 -167280475 + L2 LINE L2 3189 3313 0 297 306 35 28 chr1 75385710 75385854 -167278499 + MIR SINE MIR 80 224 -38 2456 27 41 17 chr1 75388312 75388607 -167275746 - AluY SINE Alu -9 302 1 422 143 19 67 chr1 75389243 75389348 -167275005 - L1MB3 LINE L1 -1 6182 6083 22 70 0 0 chr1 75390097 75390140 -167274213 + AT_rich Low_complexity Low_complexity 1 43 0 2063 87 33 43 chr1 75390165 75390464 -167273889 - AluSx SINE Alu -16 296 1 2143 130 3 0 chr1 75390503 75390811 -167273542 + AluSx SINE Alu 1 309 -3 2114 147 42 70 chr1 75393136 75393538 -167270815 + MER47B DNA MER2_type 28 418 0 369 321 30 53 chr1 75393729 75393994 -167270359 + L2 LINE L2 3010 3268 -4 1898 112 10 33 chr1 75393996 75394300 -167270053 - AluSx SINE Alu -15 297 1 648 143 16 5 chr1 75394402 75394583 -167269770 + CT-rich Low_complexity Low_complexity 1 182 0 2399 73 0 0 chr1 75394940 75395229 -167269124 - AluY SINE Alu -1 310 22 436 294 159 6 chr1 75396801 75396971 -167267382 + MIR3 SINE MIR 7 202 -6 296 286 12 0 chr1 75397102 75397186 -167267167 - L2 LINE L2 -8 3264 3180 369 339 33 8 chr1 75397189 75397310 -167267043 + MER91C DNA MER1_type 17 140 0 189 379 15 0 chr1 75397310 75397374 -167266979 - L2 LINE L2 -72 3200 3136 2353 81 3 0 chr1 75397764 75398060 -167266293 - AluY SINE Alu -14 297 1 885 170 11 39 chr1 75398066 75398248 -167266105 - FRAM SINE Alu 0 176 1 472 333 70 33 chr1 75398747 75399020 -167265333 - L2 LINE L2 -350 2964 2682 180 324 28 102 chr1 75399471 75399579 -167264774 - L3 LINE CR1 -58 1519 1420 513 232 51 62 chr1 75399600 75399777 -167264576 - MIR SINE MIR -35 227 53 244 239 17 86 chr1 75399868 75399985 -167264368 - L3 LINE CR1 -162 1415 1307 21 71 0 0 chr1 75400598 75400640 -167263713 + AT_rich Low_complexity Low_complexity 1 42 0 614 253 76 25 chr1 75400982 75401180 -167263173 - L2 LINE L2 0 3313 3106 413 309 8 0 chr1 75401196 75401319 -167263034 - L2 LINE L2 -615 2699 2576 267 242 15 0 chr1 75401815 75401881 -167262472 - MLT1K LTR MaLR -6 582 516 250 211 19 0 chr1 75402006 75402058 -167262295 + LTR16A1 LTR ERVL 405 457 0 235 313 82 22 chr1 75402800 75402934 -167261419 - LTR67 LTR ERVL -4 553 412 396 88 0 0 chr1 75403316 75403373 -167260980 + (TG)n Simple_repeat Simple_repeat 2 58 0 398 295 33 27 chr1 75403464 75403647 -167260706 - MIR SINE MIR -13 249 66 2143 113 0 0 chr1 75404649 75404975 -167259378 - AluSx SINE Alu 0 326 1 259 288 85 25 chr1 75405118 75405236 -167259117 - MIR SINE MIR -52 210 86 206 287 191 26 chr1 75405301 75405416 -167258937 + L2 LINE L2 3179 3312 -1 312 262 127 61 chr1 75406161 75406559 -167257794 - MLT1L LTR MaLR -83 531 10 1065 174 72 62 chr1 75406665 75406969 -167257384 + MER33 DNA MER1_type 18 324 0 1236 178 54 51 chr1 75407181 75407457 -167256896 + AluJo SINE Alu 26 302 -10 210 158 53 0 chr1 75407936 75407993 -167256360 + (TAA)n Simple_repeat Simple_repeat 2 61 0 482 45 0 15 chr1 75409421 75409487 -167254866 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 249 30 0 0 chr1 75409512 75409545 -167254808 - L1PA4 LINE L1 -181 5974 5942 1251 26 20 0 chr1 75409545 75409745 -167254608 + L1PA4 LINE L1 5989 6191 0 1393 133 0 0 chr1 75409764 75409959 -167254394 + AluSq SINE Alu 1 195 -118 1140 319 109 67 chr1 75410331 75411833 -167252520 - L2 LINE L2 -268 3004 1442 345 109 0 0 chr1 75411859 75411914 -167252439 + (TG)n Simple_repeat Simple_repeat 2 56 0 441 210 205 79 chr1 75412475 75412880 -167251473 - L1ME4a LINE L1 -13 6108 5653 324 0 0 0 chr1 75413885 75413921 -167250432 + (CA)n Simple_repeat Simple_repeat 2 37 0 242 360 128 8 chr1 75414157 75414282 -167250071 - MIR3 SINE MIR -41 167 28 245 204 0 0 chr1 75416464 75416513 -167247840 - MLT1D LTR MaLR -2 503 455 1604 155 181 12 chr1 75416523 75416553 -167247800 - MSTA LTR MaLR -35 393 369 1962 133 7 3 chr1 75416553 75416838 -167247515 + AluSx SINE Alu 1 286 -26 1604 155 181 12 chr1 75416838 75417143 -167247210 - MSTA LTR MaLR -59 369 1 * 1635 206 49 57 chr1 75417143 75417604 -167246749 - MLT1D LTR MaLR -42 463 7 2132 132 0 0 chr1 75417803 75418098 -167246255 - AluSx SINE Alu -17 295 1 27 62 0 0 chr1 75418109 75418157 -167246196 + AT_rich Low_complexity Low_complexity 1 48 0 1503 176 0 0 chr1 75418441 75418679 -167245674 + AluJo SINE Alu 56 293 -19 309 231 120 17 chr1 75418688 75418805 -167245548 + MLT1L LTR MaLR 123 251 -364 1854 183 24 24 chr1 75419792 75420163 -167244190 - MLT1A2 LTR MaLR 0 374 4 588 144 22 14 chr1 75420486 75420625 -167243728 - Charlie5 DNA MER1_type -53 2559 2420 320 179 120 60 chr1 75420750 75420867 -167243486 - L1M4 LINE L1 -433 5745 5622 2420 91 3 0 chr1 75420891 75421198 -167243155 - AluSp SINE Alu -5 308 1 378 263 105 9 chr1 75421384 75421498 -167242855 - L2 LINE L2 0 3313 3189 200 330 174 0 chr1 75421556 75421665 -167242688 + MIR SINE MIR 128 255 -7 225 0 0 0 chr1 75421668 75421693 -167242660 + (TAA)n Simple_repeat Simple_repeat 2 26 0 200 235 73 44 chr1 75422019 75422087 -167242266 - L2 LINE L2 -2 3270 3201 260 308 0 0 chr1 75424138 75424203 -167240150 + L2 LINE L2 3249 3313 0 1540 116 39 35 chr1 75428451 75428735 -167235618 + L1MA5A LINE L1 6011 6295 -2 344 291 90 8 chr1 75428973 75429107 -167235246 - L2 LINE L2 -2 3311 3167 1088 191 43 0 chr1 75429400 75429609 -167234744 - MER20 DNA MER1_type 0 219 2 26 30 0 0 chr1 75432094 75432127 -167232226 + AT_rich Low_complexity Low_complexity 1 33 0 218 314 20 49 chr1 75432200 75432302 -167232051 + MIR SINE MIR 35 133 -129 1505 182 7 34 chr1 75432346 75432643 -167231710 - AluJo SINE Alu -21 291 3 318 280 83 23 chr1 75432821 75432953 -167231400 + MIR3 SINE MIR 62 201 -7 958 258 114 31 chr1 75433432 75433889 -167230464 - HAL1 LINE L1 -4 2503 2009 235 231 77 44 chr1 75433992 75434083 -167230270 - HAL1 LINE L1 -711 1796 1703 382 310 75 50 chr1 75434211 75434411 -167229942 - MIR SINE MIR -28 234 30 1457 45 6 0 chr1 75435543 75435719 -167228634 - AluY SINE Alu -134 177 1 320 304 30 7 chr1 75436299 75436434 -167227919 - HAL1b LINE L1 -12 1336 1199 619 280 173 23 chr1 75436461 75436761 -167227592 + L3 LINE CR1 1232 1576 -1 2005 147 0 0 chr1 75437330 75437629 -167226724 - AluSx SINE Alu -13 299 1 2275 68 3 0 chr1 75437657 75437991 -167226362 + AluY SINE Alu 1 311 0 1227 63 38 0 chr1 75437991 75438150 -167226203 + AluY SINE Alu 133 297 -14 498 252 89 24 chr1 75438557 75438723 -167225630 + MIR SINE MIR 34 208 -54 21 0 0 0 chr1 75438945 75438966 -167225387 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 75439019 75439048 -167225305 + AT_rich Low_complexity Low_complexity 1 29 0 184 328 17 0 chr1 75439125 75439183 -167225170 + MIR SINE MIR 93 151 -111 212 324 5 134 chr1 75439437 75439653 -167224700 + L2 LINE L2 2992 3179 -93 2078 122 0 3 chr1 75439863 75440157 -167224196 + AluSg SINE Alu 1 293 -17 399 253 0 0 chr1 75442295 75442378 -167221975 - MIR SINE MIR -93 115 33 968 245 52 9 chr1 75442425 75442658 -167221695 + MIR SINE MIR 20 262 0 311 185 13 11 chr1 75443839 75444075 -167220278 + AluJb SINE Alu 1 285 -17 525 173 39 0 chr1 75444075 75444231 -167220122 + (TA)n Simple_repeat Simple_repeat 1 162 0 306 0 0 0 chr1 75444231 75444265 -167220088 + (TG)n Simple_repeat Simple_repeat 1 34 0 2168 65 0 14 chr1 75444269 75444547 -167219806 - AluY SINE Alu -37 274 1 208 264 19 0 chr1 75444547 75444600 -167219753 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 192 273 0 0 chr1 75444616 75444704 -167219649 + (TA)n Simple_repeat Simple_repeat 2 89 0 204 40 0 0 chr1 75444707 75444732 -167219621 + (TG)n Simple_repeat Simple_repeat 2 26 0 24 32 0 0 chr1 75444954 75444985 -167219368 + AT_rich Low_complexity Low_complexity 1 31 0 1354 273 94 19 chr1 75445835 75446304 -167218049 - MLT1J LTR MaLR -7 504 1 193 333 0 17 chr1 75446715 75446775 -167217578 + L2 LINE L2 3210 3268 -4 3635 94 63 0 chr1 75448211 75448731 -167215622 - MER41A LTR ERV1 -1 553 1 3087 90 77 4 chr1 75448756 75449222 -167215131 - LTR3b LTR ERVK 0 500 1 1450 160 4 53 chr1 75449870 75450151 -167214202 - AluJo SINE Alu -10 302 36 2112 151 0 0 chr1 75450216 75450514 -167213839 - AluSx SINE Alu -14 298 1 188 336 75 19 chr1 75451015 75451122 -167213231 - L2 LINE L2 -11 3261 3149 399 287 33 0 chr1 75451132 75451254 -167213099 - L2 LINE L2 0 3313 3188 617 115 0 57 chr1 75451647 75451769 -167212584 - L1MA7 LINE L1 -2 6289 6175 262 194 134 0 chr1 75452516 75452583 -167211770 + MER69 DNA AcHobo 2451 2526 0 1847 173 17 0 chr1 75452910 75453384 -167210969 + AluJb SINE Alu 1 312 0 287 195 0 98 chr1 75453888 75453970 -167210383 - MIR SINE MIR -3 259 186 587 201 0 52 chr1 75453983 75454117 -167210236 - FRAM SINE Alu -30 146 20 659 261 34 6 chr1 75454130 75454306 -167210047 - MIR SINE MIR -62 200 20 207 303 172 10 chr1 75455227 75455326 -167209027 + MIR SINE MIR 28 142 -66 276 322 26 35 chr1 75455379 75455494 -167208859 - L2 LINE L2 -2 3311 3198 379 303 129 15 chr1 75455666 75455798 -167208555 + MIR3 SINE MIR 44 190 -18 772 258 91 5 chr1 75456457 75456666 -167207687 + MIR SINE MIR 2 228 -34 185 316 62 86 chr1 75456651 75456955 -167207398 - L2 LINE L2 -1430 1884 1588 * 1830 136 48 3 chr1 75458101 75458411 -167205942 - L1MC1 LINE L1 0 6333 6010 679 334 33 61 chr1 75459390 75459917 -167204436 - L2 LINE L2 -38 3234 2723 857 39 39 0 chr1 75461327 75461456 -167202897 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 315 71 0 0 chr1 75461463 75461505 -167202848 + (CA)n Simple_repeat Simple_repeat 2 43 0 481 299 92 33 chr1 75461645 75461980 -167202373 - L1ME4a LINE L1 -3 6118 5764 21 0 0 0 chr1 75462072 75462093 -167202260 + AT_rich Low_complexity Low_complexity 1 21 0 2308 88 11 0 chr1 75462290 75462573 -167201780 - AluSc SINE Alu -23 286 1 216 204 23 0 chr1 75463901 75463945 -167200408 + CT-rich Low_complexity Low_complexity 3 47 0 190 278 56 0 chr1 75463959 75464013 -167200340 - L2 LINE L2 -5 3267 3211 455 267 116 15 chr1 75464551 75464713 -167199640 + MIR SINE MIR 3 180 -82 2108 130 0 0 chr1 75465387 75465694 -167198659 - AluSx SINE Alu 0 307 1 210 162 0 0 chr1 75465859 75465896 -167198457 + (TA)n Simple_repeat Simple_repeat 1 37 0 359 77 123 0 chr1 75465901 75465966 -167198387 - L1MC2 LINE L1 -3 6341 6269 199 220 0 68 chr1 75467263 75467322 -167197031 + L2 LINE L2 3251 3305 -8 4444 69 9 3 chr1 75467561 75468142 -167196211 + L1PA8A LINE L1 5546 6129 -2 786 88 0 0 chr1 75468217 75468330 -167196023 - L1PB1 LINE L1 -1 6150 6038 259 366 97 32 chr1 75469128 75469437 -167194916 + L2 LINE L2 2493 2821 -493 407 304 15 15 chr1 75469490 75469625 -167194728 + L2 LINE L2 2914 3048 -224 2373 119 8 0 chr1 75469918 75470279 -167194074 + THE1B LTR MaLR 1 364 0 8426 137 48 35 chr1 75470286 75471824 -167192529 + THE1B-int LTR MaLR 23 1580 0 2470 122 0 11 chr1 75471824 75472192 -167192161 + THE1B LTR MaLR 1 364 0 314 335 98 37 chr1 75472429 75472593 -167191760 + MIR SINE MIR 23 196 -66 338 333 24 0 chr1 75473363 75473504 -167190849 - MER5A DNA MER1_type -25 164 10 804 182 26 52 chr1 75473517 75473709 -167190644 + MER5A DNA MER1_type 1 187 -2 2077 182 85 11 chr1 75474349 75474783 -167189570 - MLT1C LTR MaLR -1 466 1 4414 165 33 25 chr1 75474921 75474958 -167189395 + L1MA6 LINE L1 4456 4491 -1809 1977 136 3 36 chr1 75474958 75475266 -167189087 + AluSx SINE Alu 1 298 -14 4414 165 33 25 chr1 75475266 75477052 -167187301 + L1MA6 LINE L1 4491 6296 -4 1711 156 34 0 chr1 75477622 75477891 -167186462 - AluSx SINE Alu -28 284 7 180 245 0 0 chr1 75479080 75479133 -167185220 + CT-rich Low_complexity Low_complexity 2 54 0 343 311 43 72 chr1 75479295 75479504 -167184849 - MIR SINE MIR -49 213 11 383 335 39 13 chr1 75479967 75480122 -167184231 + MIR SINE MIR 34 192 -70 238 251 237 10 chr1 75480764 75480915 -167183438 - MIR SINE MIR -40 222 35 289 273 23 87 chr1 75480997 75481169 -167183184 - MLT1I LTR MaLR -5 404 244 1102 188 88 49 chr1 75481273 75481602 -167182751 + MER2 DNA MER2_type 3 344 0 606 317 100 51 chr1 75482399 75482931 -167181422 + L2 LINE L2 2506 3271 -1 579 287 82 43 chr1 75483322 75483604 -167180749 + Tigger8 DNA MER2_type 183 491 -175 1759 134 51 54 chr1 75483604 75483917 -167180436 + AluSx SINE Alu 1 312 0 579 287 82 43 chr1 75483917 75484098 -167180255 + Tigger8 DNA MER2_type 491 664 -2 231 254 17 0 chr1 75484138 75484197 -167180156 - MIR SINE MIR -55 153 94 331 231 0 0 chr1 75484796 75484861 -167179492 - MER3 DNA MER1_type -98 111 47 206 295 191 17 chr1 75485039 75485197 -167179156 + L2 LINE L2 2776 2973 -340 2145 125 61 19 chr1 75486087 75486447 -167177906 - THE1C LTR MaLR 0 375 1 2632 92 3 11 chr1 75487063 75487421 -167176932 - THE1A LTR MaLR 0 355 1 428 264 98 46 chr1 75487471 75487645 -167176708 - MIR SINE MIR -74 188 6 401 227 145 76 chr1 75488148 75488320 -167176033 + MIR SINE MIR 2 185 -23 237 333 0 14 chr1 75488397 75488469 -167175884 - MIR SINE MIR -156 106 36 306 267 17 69 chr1 75489469 75489585 -167174768 + MIR SINE MIR 4 113 -149 668 285 80 64 chr1 75490027 75490402 -167173951 - MLT1K LTR MaLR -8 580 200 354 45 0 0 chr1 75490740 75490784 -167173569 + (TC)n Simple_repeat Simple_repeat 2 45 0 310 359 100 66 chr1 75491372 75491603 -167172750 - L2 LINE L2 0 3272 3050 1651 206 18 35 chr1 75491603 75492000 -167172353 - MLT1B LTR MaLR 0 390 1 310 359 100 66 chr1 75492000 75492230 -167172123 - L2 LINE L2 -222 3050 2796 292 305 25 17 chr1 75492281 75492399 -167171954 - MLT1J2 LTR MaLR -59 391 273 203 172 224 0 chr1 75492544 75492602 -167171751 + MIR3 SINE MIR 135 205 -3 552 360 133 6 chr1 75492642 75493122 -167171231 - L2 LINE L2 -511 2803 2263 2731 85 3 0 chr1 75493810 75494164 -167170189 + THE1A LTR MaLR 1 355 0 11365 107 4 1 chr1 75494164 75495739 -167168614 + THE1A-int LTR MaLR 1 1580 0 2425 110 17 0 chr1 75495745 75496090 -167168263 + THE1A LTR MaLR 3 353 -2 258 253 165 0 chr1 75497135 75497226 -167167127 + L2 LINE L2 2201 2306 -1008 531 255 172 0 chr1 75498339 75498484 -167165869 - MER5A DNA MER1_type -14 175 6 219 36 0 0 chr1 75498924 75498952 -167165401 + (TA)n Simple_repeat Simple_repeat 2 29 0 184 214 56 45 chr1 75500479 75500568 -167163785 + MIR SINE MIR 172 261 -1 353 350 51 25 chr1 75501426 75501583 -167162770 - L2 LINE L2 0 3272 3112 183 218 0 0 chr1 75501673 75501728 -167162625 + (TG)n Simple_repeat Simple_repeat 2 56 0 239 286 57 0 chr1 75501734 75501804 -167162549 - L2 LINE L2 -213 3059 2986 2267 130 8 8 chr1 75501842 75502197 -167162156 + THE1A LTR MaLR 1 355 0 11679 97 3 0 chr1 75502197 75503772 -167160581 + THE1A-int LTR MaLR 1 1580 0 2222 131 17 3 chr1 75503772 75504122 -167160231 + THE1A LTR MaLR 1 355 0 287 161 0 16 chr1 75505688 75505750 -167158603 + (TG)n Simple_repeat Simple_repeat 2 62 0 1693 192 7 3 chr1 75505965 75506267 -167158086 - AluJb SINE Alu -9 303 1 402 161 0 0 chr1 75506405 75506498 -167157855 + (TA)n Simple_repeat Simple_repeat 1 93 0 416 354 156 29 chr1 75506824 75507279 -167157074 + L2 LINE L2 2011 2523 -791 9475 39 1 3 chr1 75507279 75508439 -167155914 + L1P LINE L1 3493 4650 -1496 433 301 50 27 chr1 75508977 75509236 -167155117 - L1ME3A LINE L1 -306 5864 5600 1799 157 0 0 chr1 75509314 75509581 -167154772 + AluSx SINE Alu 1 267 -45 394 70 0 0 chr1 75509581 75509638 -167154715 - MLT2A2 LTR ERVL -396 57 1 1080 97 0 0 chr1 75509719 75509874 -167154479 - MER41B LTR ERV1 0 635 481 7202 106 28 6 chr1 75509889 75510956 -167153397 - MER41-int LTR ERV1 -234 5712 4622 251 253 165 0 chr1 75511751 75511842 -167152511 + L2 LINE L2 2201 2306 -1008 531 255 172 0 chr1 75512954 75513099 -167151254 - MER5A DNA MER1_type -14 175 6 201 39 0 0 chr1 75513539 75513565 -167150788 + (TA)n Simple_repeat Simple_repeat 2 27 0 184 214 56 45 chr1 75515092 75515181 -167149172 + MIR SINE MIR 172 261 -1 353 350 51 25 chr1 75516039 75516196 -167148157 - L2 LINE L2 0 3272 3112 183 218 0 0 chr1 75516286 75516341 -167148012 + (TG)n Simple_repeat Simple_repeat 2 56 0 214 273 76 0 chr1 75516347 75516413 -167147940 - L2 LINE L2 -213 3059 2989 2222 131 17 3 chr1 75516453 75516803 -167147550 + THE1A LTR MaLR 1 355 0 323 152 0 15 chr1 75518369 75518435 -167145918 + (TG)n Simple_repeat Simple_repeat 2 66 0 1693 192 7 3 chr1 75518650 75518952 -167145401 - AluJb SINE Alu -9 303 1 420 158 0 0 chr1 75519090 75519185 -167145168 + (TA)n Simple_repeat Simple_repeat 2 96 0 416 354 156 29 chr1 75519511 75519966 -167144387 + L2 LINE L2 2011 2523 -791 9456 40 1 3 chr1 75519966 75521126 -167143227 + L1P LINE L1 3493 4650 -1496 433 301 50 27 chr1 75521664 75521923 -167142430 - L1ME3A LINE L1 -306 5864 5600 1799 157 0 0 chr1 75522001 75522268 -167142085 + AluSx SINE Alu 1 267 -45 394 70 0 0 chr1 75522268 75522325 -167142028 - MLT2A2 LTR ERVL -396 57 1 1080 97 0 0 chr1 75522406 75522561 -167141792 - MER41B LTR ERV1 0 635 481 13238 143 27 39 chr1 75522576 75525481 -167138872 - MER41-int LTR ERV1 -234 5712 2165 269 129 0 157 chr1 75525485 75525555 -167138798 - MER41-int LTR ERV1 -4283 1663 1605 * 2344 114 26 57 chr1 75525528 75525923 -167138430 - MER41-int LTR ERV1 -4494 1452 1081 706 134 50 0 chr1 75525909 75526028 -167138325 - MER41-int LTR ERV1 -5322 624 500 * 302 350 78 0 chr1 75526083 75526186 -167138167 + L2 LINE L2 3183 3293 -20 382 295 54 27 chr1 75528555 75528704 -167135649 - MIR3 SINE MIR -1 207 55 2255 164 15 26 chr1 75528832 75529300 -167135053 - L1 LINE L1 -933 5213 4751 5144 160 44 19 chr1 75529327 75529863 -167134490 + L1MA6 LINE L1 5226 5747 -553 351 0 0 0 chr1 75529863 75529902 -167134451 + (CA)n Simple_repeat Simple_repeat 2 40 0 5144 160 44 19 chr1 75529902 75530404 -167133949 + L1MA6 LINE L1 5747 6290 -10 4975 136 67 5 chr1 75530461 75531486 -167132867 - L1PA16 LINE L1 -8 6158 5071 586 182 83 0 chr1 75531492 75531624 -167132729 + L1P LINE L1 4785 4927 -1219 197 231 0 0 chr1 75531792 75531831 -167132522 - MIR SINE MIR -216 46 8 395 250 10 20 chr1 75532266 75532366 -167131987 + L2 LINE L2 3173 3271 -1 188 369 0 24 chr1 75532365 75532449 -167131904 - MIR3 SINE MIR -121 87 6 * 263 285 123 8 chr1 75532911 75533041 -167131312 - MIR SINE MIR -4 258 114 234 121 35 35 chr1 75533174 75533232 -167131121 + (TA)n Simple_repeat Simple_repeat 2 59 0 4124 248 34 21 chr1 75533266 75534576 -167129777 + L1M4 LINE L1 3598 4924 -1222 507 386 59 0 chr1 75534614 75534904 -167129449 - MLT1J LTR MaLR -62 449 143 2313 72 10 3 chr1 75536210 75536503 -167127850 - AluSg SINE Alu -15 295 1 861 211 0 23 chr1 75536740 75536911 -167127442 + FRAM SINE Alu 9 175 -1 417 259 42 48 chr1 75537227 75537393 -167126960 - MIR SINE MIR 0 262 98 455 233 148 11 chr1 75538083 75538272 -167126081 - L1MC4a LINE L1 -1911 5897 5683 624 260 79 13 chr1 75538288 75538515 -167125838 + MIR SINE MIR 21 262 0 321 274 0 0 chr1 75538534 75538626 -167125727 - L1MC4a LINE L1 -441 5680 5586 1303 230 25 35 chr1 75538630 75538946 -167125407 - LTR16C LTR ERVL 0 491 179 434 259 52 35 chr1 75538946 75539120 -167125233 + MER97b DNA MER1_type? 1 177 -876 1036 328 36 14 chr1 75539352 75539852 -167124501 - ERVL LTR ERVL -1941 3823 3313 597 262 4 35 chr1 75540787 75540970 -167123383 - MER5B DNA MER1_type 0 178 13 2239 138 8 22 chr1 75541060 75541429 -167122924 - THE1B LTR MaLR 0 364 1 11231 100 14 3 chr1 75541429 75542990 -167121363 - THE1B-int LTR MaLR 0 1580 4 2122 125 8 60 chr1 75542992 75543376 -167120977 - THE1B LTR MaLR 0 364 1 394 238 87 16 chr1 75543376 75543502 -167120851 - MIR SINE MIR -70 192 58 226 330 25 25 chr1 75543751 75543869 -167120484 + MIR SINE MIR 90 207 -55 1543 243 94 34 chr1 75543950 75544419 -167119934 - MLT1D LTR MaLR -8 497 1 240 389 67 0 chr1 75545664 75545754 -167118599 + L2 LINE L2 3151 3246 -26 614 326 138 61 chr1 75547542 75548155 -167116198 + L2 LINE L2 2609 3268 -4 867 248 19 9 chr1 75548523 75548737 -167115616 - MIR SINE MIR -41 221 6 186 371 50 14 chr1 75549732 75549872 -167114481 + MIR3 SINE MIR 3 147 -61 207 189 0 0 chr1 75549968 75550005 -167114348 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 198 161 0 0 chr1 75550557 75550588 -167113765 - L3 LINE CR1 -6 1571 1541 1881 176 77 23 chr1 75550695 75551138 -167113215 - MLT1C LTR MaLR 0 467 1 419 335 49 12 chr1 75552383 75552547 -167111806 + MIR SINE MIR 16 185 -77 2306 105 0 3 chr1 75552970 75553274 -167111079 - AluSq SINE Alu -6 307 5 33 0 0 0 chr1 75553376 75553409 -167110944 + AT_rich Low_complexity Low_complexity 1 33 0 476 278 139 12 chr1 75553953 75554126 -167110227 + MIR SINE MIR 40 234 -28 2401 87 10 0 chr1 75554436 75554735 -167109618 - AluSx SINE Alu 0 312 11 681 286 52 5 chr1 75554930 75555143 -167109210 - MIR SINE MIR -9 253 31 255 324 152 49 chr1 75556032 75556381 -167107972 - L2 LINE L2 0 3272 2888 206 368 38 54 chr1 75556438 75556623 -167107730 - L2 LINE L2 -469 2845 2664 330 323 161 31 chr1 75556882 75557105 -167107248 + MIR SINE MIR 11 262 0 22 56 0 0 chr1 75557803 75557839 -167106514 + AT_rich Low_complexity Low_complexity 1 36 0 2324 42 0 0 chr1 75557867 75558131 -167106222 - AluY SINE Alu -9 302 39 219 216 0 0 chr1 75558446 75558483 -167105870 + MER91 DNA MER1_type 132 168 -28 1112 191 49 17 chr1 75558629 75558917 -167105436 + L1MA9 LINE L1 5983 6279 -33 281 312 11 11 chr1 75560385 75560478 -167103875 + MIR SINE MIR 13 105 -157 920 199 144 76 chr1 75560487 75560828 -167103525 - L2 LINE L2 0 3313 2950 1690 177 34 60 chr1 75560896 75561280 -167103073 - MLT1A2 LTR MaLR 0 374 1 224 301 39 48 chr1 75561287 75561390 -167102963 + MIR SINE MIR 161 262 0 483 281 62 0 chr1 75561564 75561692 -167102661 + L2 LINE L2 3137 3272 0 1051 197 20 0 chr1 75562574 75562777 -167101576 - MLT1E1 LTR MaLR 0 654 448 1135 206 36 4 chr1 75562820 75563067 -167101286 - MLT1E1 LTR MaLR -394 260 6 1957 122 3 76 chr1 75563193 75563522 -167100831 - AluSx SINE Alu -7 305 1 528 260 93 0 chr1 75564128 75564278 -167100075 + MIR SINE MIR 55 218 -44 512 330 30 7 chr1 75564320 75564617 -167099736 + L1PA12 LINE L1 2 305 -7276 4377 193 18 42 chr1 75565635 75566587 -167097766 + L1PA12 LINE L1 2326 3299 -4285 2276 114 7 0 chr1 75566587 75566895 -167097458 - AluSx SINE Alu -2 310 1 4377 193 18 42 chr1 75566895 75567202 -167097151 + L1PA12 LINE L1 3299 3561 -4023 2111 122 14 0 chr1 75567202 75567489 -167096864 - AluSc SINE Alu -18 291 1 4377 193 18 42 chr1 75567489 75567754 -167096599 + L1PA12 LINE L1 3561 3831 -3753 13028 207 42 0 chr1 75567926 75568089 -167096264 + L1PA15 LINE L1 2238 2393 -3772 1975 167 0 3 chr1 75568089 75568401 -167095952 + AluSx SINE Alu 1 311 -1 13028 207 42 0 chr1 75568401 75572172 -167092181 + L1PA15 LINE L1 2393 6164 -1 180 125 0 0 chr1 75572946 75572978 -167091375 + (CAGAGA)n Simple_repeat Simple_repeat 1 32 0 246 32 0 0 chr1 75573524 75573555 -167090798 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1635 95 0 5 chr1 75573776 75573986 -167090367 + AluSg/x SINE Alu 89 297 -15 428 90 0 26 chr1 75573990 75574068 -167090285 + L1PB1 LINE L1 6074 6149 -2 376 277 66 30 chr1 75575035 75575201 -167089152 + MIR SINE MIR 91 262 0 181 219 0 0 chr1 75576071 75576103 -167088250 - L2 LINE L2 -8 3264 3233 2034 189 56 12 chr1 75576185 75576593 -167087760 + MSTA LTR MaLR 3 428 0 8582 179 13 18 chr1 75576593 75578237 -167086116 + MSTA-int LTR MaLR 1 1637 -14 928 170 87 60 chr1 75578255 75578520 -167085833 + MSTA LTR MaLR 1 272 -156 592 136 34 34 chr1 75578564 75578682 -167085671 - MSTA LTR MaLR -32 396 279 190 318 37 131 chr1 75579197 75579571 -167084782 - L2 LINE L2 -43 3229 2891 2192 113 0 13 chr1 75579897 75580198 -167084155 - AluSx SINE Alu -15 297 1 225 357 136 26 chr1 75580255 75580594 -167083759 - L2 LINE L2 -98 3215 2840 204 339 0 0 chr1 75581409 75581468 -167082885 - L2 LINE L2 -5 3308 3250 277 313 10 42 chr1 75581612 75581708 -167082645 - L2 LINE L2 -213 3059 2967 714 221 67 69 chr1 75582713 75582934 -167081419 + MIR SINE MIR 18 237 -25 350 234 48 89 chr1 75582961 75583085 -167081268 + L2 LINE L2 3154 3272 0 487 308 124 66 chr1 75583199 75583546 -167080807 - L2 LINE L2 -1 3271 2905 192 426 31 12 chr1 75583641 75583897 -167080456 + L2 LINE L2 2716 2976 -338 276 278 14 76 chr1 75583946 75584090 -167080263 + MER112 DNA MER1_type 125 259 -1 200 188 50 38 chr1 75584850 75584930 -167079423 + CT-rich Low_complexity Low_complexity 3 83 0 284 150 0 17 chr1 75586021 75586081 -167078272 - L1MA6 LINE L1 -1 6299 6241 1838 188 0 0 chr1 75586898 75587244 -167077109 - MER6 DNA MER2_type 0 865 260 582 183 20 38 chr1 75587224 75587372 -167076981 - MER6A DNA MER2_type -70 535 -4 * 21 0 0 0 chr1 75587400 75587421 -167076932 + AT_rich Low_complexity Low_complexity 1 21 0 322 282 117 0 chr1 75587449 75587552 -167076801 + MIR3 SINE MIR 51 165 -43 327 299 39 16 chr1 75587747 75587874 -167076479 + MIR SINE MIR 28 157 -105 231 272 29 58 chr1 75588967 75589070 -167075283 - MIR SINE MIR -77 185 86 207 285 56 12 chr1 75589452 75589558 -167074795 - MIR SINE MIR -35 173 64 1948 74 4 0 chr1 75589831 75590098 -167074255 + AluY SINE Alu 37 304 0 1879 204 127 13 chr1 75590098 75590697 -167073656 + L1MDa LINE L1 1639 2305 -4235 629 189 55 4 chr1 75590701 75590938 -167073415 + L1MD2 LINE L1 6048 6345 -14 1243 128 0 21 chr1 75591168 75591355 -167072998 - AluSq SINE Alu -11 302 120 23 0 0 0 chr1 75591440 75591463 -167072890 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 75592098 75592126 -167072227 + AT_rich Low_complexity Low_complexity 1 28 0 4115 201 35 11 chr1 75592156 75592828 -167071525 - L1MB2 LINE L1 -26 6145 5490 1652 136 185 19 chr1 75592828 75593195 -167071158 - MSTA LTR MaLR 0 428 1 4115 201 35 11 chr1 75593195 75593895 -167070458 - L1MB2 LINE L1 -681 5490 4748 345 282 107 21 chr1 75593928 75594311 -167070042 - L1MC5 LINE L1 -167 7794 7379 348 338 24 45 chr1 75595063 75595353 -167069000 - L1ME3A LINE L1 -286 5884 5601 319 310 84 60 chr1 75595355 75595433 -167068920 - L1ME3A LINE L1 -614 5548 5473 2300 149 5 8 chr1 75595433 75595809 -167068544 - THE1C LTR MaLR 0 375 1 319 310 84 60 chr1 75595809 75596014 -167068339 - L1ME3A LINE L1 -689 5473 5258 562 347 3 0 chr1 75596103 75596352 -167068001 + (TCTCTG)n Simple_repeat Simple_repeat 1 249 0 279 304 0 0 chr1 75596382 75596517 -167067836 + CT-rich Low_complexity Low_complexity 2 136 0 1961 116 35 3 chr1 75596702 75596987 -167067366 + AluY SINE Alu 1 294 -17 24 53 0 0 chr1 75598270 75598308 -167066045 + AT_rich Low_complexity Low_complexity 1 38 0 301 123 68 14 chr1 75598942 75599015 -167065338 + L1MDa LINE L1 1704 1780 -4760 2033 128 67 15 chr1 75599306 75599649 -167064704 + THE1B LTR MaLR 4 364 0 388 335 104 0 chr1 75600774 75600947 -167063406 + MIR SINE MIR 56 246 -16 745 260 52 115 chr1 75601052 75601422 -167062931 + L2 LINE L2 2864 3256 -57 2013 154 8 11 chr1 75601422 75601778 -167062575 - THE1A LTR MaLR 0 355 1 11723 101 1 3 chr1 75601778 75603361 -167060992 - THE1A-int LTR MaLR 0 1580 1 2250 140 6 8 chr1 75603361 75603717 -167060636 - THE1A LTR MaLR 0 355 1 745 260 52 115 chr1 75603717 75603824 -167060529 + L2 LINE L2 3253 3313 0 220 368 17 17 chr1 75605590 75605707 -167058646 - MIR3 SINE MIR -16 192 76 189 0 0 0 chr1 75606956 75606977 -167057376 + (A)n Simple_repeat Simple_repeat 1 21 0 248 222 0 63 chr1 75607263 75607326 -167057027 + MLT1J2 LTR MaLR 392 450 0 294 43 0 21 chr1 75607501 75607548 -167056805 + MADE1 DNA Mariner 1 46 -34 269 354 62 7 chr1 75607654 75607798 -167056555 + MLT1I LTR MaLR 244 395 -14 413 265 0 6 chr1 75607827 75607993 -167056360 + (TA)n Simple_repeat Simple_repeat 1 165 0 1368 187 15 0 chr1 75608776 75609049 -167055304 + L1MD3 LINE L1 7711 7987 -8 469 144 89 0 chr1 75609249 75609339 -167055014 - MER4A LTR ERV1 -566 98 1 338 304 111 29 chr1 75609721 75609928 -167054425 + MIR SINE MIR 31 254 -8 2465 50 0 3 chr1 75610003 75610305 -167054048 + AluY SINE Alu 1 301 -10 520 239 104 22 chr1 75611297 75611652 -167052701 - L1M4 LINE L1 -854 5528 5145 390 308 118 9 chr1 75611736 75612164 -167052189 - L1M4 LINE L1 -1276 5106 4583 325 282 48 40 chr1 75612243 75612367 -167051986 + L2 LINE L2 3188 3312 -1 390 293 164 12 chr1 75612374 75612672 -167051681 - L1M4 LINE L1 -2123 4259 3925 746 197 32 18 chr1 75612683 75612901 -167051452 - L1M4 LINE L1 -3905 2479 2259 2172 113 51 25 chr1 75612911 75613266 -167051087 - THE1B LTR MaLR 0 364 1 10069 90 19 59 chr1 75613271 75614908 -167049445 - THE1B-int LTR MaLR -6 1574 3 2196 122 51 20 chr1 75614910 75615263 -167049090 - THE1B LTR MaLR 0 364 1 332 303 17 26 chr1 75615269 75615500 -167048853 - L1M4 LINE L1 -4138 2246 2018 1900 238 84 43 chr1 75615606 75616642 -167047711 - L1M4 LINE L1 -4634 1750 673 249 286 163 31 chr1 75616709 75616807 -167047546 + L2 LINE L2 3147 3257 -15 235 280 67 87 chr1 75618864 75619014 -167045339 + L2 LINE L2 2916 3062 -251 869 268 26 4 chr1 75619482 75619710 -167044643 - MIR SINE MIR -10 252 20 1864 50 0 0 chr1 75619713 75619934 -167044419 + AluY SINE Alu 80 300 -11 276 227 15 15 chr1 75620226 75620292 -167044061 + MLT1J LTR MaLR 253 318 -193 729 284 96 36 chr1 75620631 75621100 -167043253 - LTR33 LTR ERVL 0 521 25 216 194 78 4 chr1 75621256 75621320 -167043033 + MIR SINE MIR 58 124 -103 * 224 337 195 0 chr1 75621304 75621473 -167042880 + L2 LINE L2 629 830 -2484 838 192 59 69 chr1 75621522 75621970 -167042383 + MLT1D LTR MaLR 1 496 -9 186 314 89 24 chr1 75622298 75622422 -167041931 + L2 LINE L2 1294 1425 -1889 219 359 0 48 chr1 75623141 75623244 -167041109 - MER5A DNA MER1_type -28 161 64 226 384 162 5 chr1 75623286 75623471 -167040882 + MIR SINE MIR 49 262 0 1696 163 54 52 chr1 75623667 75624091 -167040262 + L1MA9 LINE L1 5879 6303 -9 189 357 40 16 chr1 75624419 75624545 -167039808 - L2 LINE L2 -847 2467 2339 232 171 0 0 chr1 75624699 75624740 -167039613 + MLT1K LTR MaLR 533 573 -15 349 327 75 66 chr1 75625074 75625621 -167038732 + L2 LINE L2 2694 3237 -35 243 0 0 0 chr1 75625635 75625662 -167038691 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 187 328 69 9 chr1 75627950 75628066 -167036287 - MIR SINE MIR -16 246 124 11642 25 1 2 chr1 75628436 75629888 -167034465 + L1P LINE L1 3813 5262 -884 482 114 13 0 chr1 75629890 75629969 -167034384 + (TTC)n Simple_repeat Simple_repeat 3 82 0 358 310 89 13 chr1 75632267 75632425 -167031928 + MIR SINE MIR 55 224 -38 * 404 283 141 11 chr1 75632405 75632582 -167031771 - MIR SINE MIR -50 212 13 1887 140 64 17 chr1 75632719 75633077 -167031276 - THE1C LTR MaLR 0 375 1 1538 215 82 40 chr1 75633463 75633960 -167030393 - Charlie1b DNA MER1_type -4 519 2 385 252 16 47 chr1 75635037 75635164 -167029189 - MIR SINE MIR -50 212 90 363 275 162 6 chr1 75635297 75635464 -167028889 + MER113 DNA MER1_type? 227 419 -102 4267 167 83 192 chr1 75636217 75638184 -167026169 + MER52A LTR ERV1 1 1754 -1 1976 120 21 0 chr1 75638408 75638734 -167025619 - L1P4 LINE L1 -370 5796 5464 12194 103 8 2 chr1 75638737 75640642 -167023711 + L1PA8 LINE L1 2735 4650 -1496 2156 23 12 0 chr1 75640645 75640903 -167023450 - L1PA4 LINE L1 0 6155 5895 * 6577 75 17 4 chr1 75640901 75642141 -167022212 + L1PA4 LINE L1 4648 5906 -266 2266 98 0 19 chr1 75642141 75642456 -167021897 + AluY SINE Alu 1 309 -2 6577 75 17 4 chr1 75642456 75642720 -167021633 + L1PA8 LINE L1 5906 6165 -7 4417 174 41 39 chr1 75642725 75643137 -167021216 - L1P4 LINE L1 -690 5476 5066 2188 138 3 0 chr1 75643137 75643448 -167020905 - AluSx SINE Alu 0 312 1 4417 174 41 39 chr1 75643448 75644388 -167019965 - L1P4 LINE L1 -1100 5066 4130 1291 191 4 4 chr1 75644391 75644637 -167019716 + MLT1C LTR MaLR 174 419 -48 23 33 0 0 chr1 75644768 75644798 -167019555 + AT_rich Low_complexity Low_complexity 1 30 0 214 343 59 10 chr1 75645166 75645268 -167019085 - L2 LINE L2 0 3313 3207 546 16 0 0 chr1 75646026 75646089 -167018264 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1829 150 4 4 chr1 75646095 75646362 -167017991 - AluSx SINE Alu -37 275 9 182 289 101 60 chr1 75647061 75647210 -167017143 + MIR SINE MIR 3 157 -105 274 263 144 25 chr1 75647968 75648086 -167016267 + L2 LINE L2 3182 3313 0 201 254 14 28 chr1 75648272 75648343 -167016010 + CT-rich Low_complexity Low_complexity 2 71 0 343 250 316 7 chr1 75648681 75648817 -167015536 - MER5A DNA MER1_type -3 186 9 374 262 64 87 chr1 75648924 75649096 -167015257 + MIR SINE MIR 20 187 -75 953 204 57 100 chr1 75649223 75649712 -167014641 + MER110A LTR ERV1 1 468 0 587 285 78 28 chr1 75649712 75649754 -167014599 + MER110 LTR ERV1 436 491 0 280 379 71 33 chr1 75649988 75650170 -167014183 + L2 LINE L2 3083 3271 -1 352 298 77 2 chr1 75651394 75651562 -167012791 - MIR SINE MIR -60 202 20 369 331 133 22 chr1 75651998 75652179 -167012174 - MIR SINE MIR -15 247 47 278 250 27 108 chr1 75653457 75653607 -167010746 + L1ME3A LINE L1 5355 5475 -691 897 229 11 11 chr1 75653607 75653782 -167010571 + FAM SINE Alu 1 175 0 278 250 27 108 chr1 75653782 75653859 -167010494 + L1ME3A LINE L1 5475 5557 -609 527 285 42 107 chr1 75653924 75654072 -167010281 + L1ME3A LINE L1 5587 5743 -427 2492 136 46 5 chr1 75654072 75654483 -167009870 + MSTB1 LTR MaLR 1 428 -4 527 285 42 107 chr1 75654483 75654717 -167009636 + L1ME3A LINE L1 5743 5944 -226 2040 142 3 3 chr1 75654778 75655088 -167009265 + AluSx SINE Alu 1 310 -2 5940 182 61 41 chr1 75655188 75656542 -167007811 - THE1B-int LTR MaLR -269 1382 3 2438 127 5 19 chr1 75656544 75656913 -167007440 - THE1B LTR MaLR 0 364 1 22 94 0 0 chr1 75656923 75656987 -167007366 + AT_rich Low_complexity Low_complexity 1 64 0 510 240 0 0 chr1 75657219 75657319 -167007034 - MER5A DNA MER1_type -83 106 7 995 214 43 16 chr1 75657341 75657598 -167006755 + MER5C DNA MER1_type 10 273 -51 327 228 48 3 chr1 75657599 75657922 -167006431 + (TA)n Simple_repeat Simple_repeat 1 337 0 22 0 0 0 chr1 75657928 75657950 -167006403 + AT_rich Low_complexity Low_complexity 1 22 0 366 135 0 40 chr1 75658038 75658112 -167006241 + L1PA13 LINE L1 5773 5843 -320 217 167 0 0 chr1 75658129 75658165 -167006188 + MER5C DNA MER1_type 286 321 -3 297 281 90 0 chr1 75658595 75658684 -167005669 - MIR SINE MIR -118 144 48 366 307 31 24 chr1 75658721 75658848 -167005505 + LTR67 LTR ERVL 36 163 -394 762 124 124 59 chr1 75658927 75659096 -167005257 + MLT1C LTR MaLR 1 180 -287 1941 131 49 68 chr1 75659138 75659341 -167005012 - L1PA16 LINE L1 -11 6155 5962 2206 111 10 0 chr1 75659341 75659647 -167004706 + AluSg SINE Alu 1 309 -1 1941 131 49 68 chr1 75659647 75659854 -167004499 - L1PA16 LINE L1 -204 5962 5753 298 291 99 0 chr1 75660114 75660255 -167004098 + L1ME4a LINE L1 5611 5765 -356 241 291 0 0 chr1 75660271 75660326 -167004027 + L2 LINE L2 3213 3267 -5 334 210 97 32 chr1 75660366 75660490 -167003863 + L1ME4a LINE L1 5990 6121 0 417 267 47 27 chr1 75660938 75661088 -167003265 + L2 LINE L2 2237 2389 -925 413 233 66 16 chr1 75661266 75661400 -167002953 - MLT1I LTR MaLR -243 166 18 302 143 0 0 chr1 75663582 75663631 -167000722 + MER53 DNA DNA 1 49 -140 261 165 25 25 chr1 75663724 75663803 -167000550 + MER53 DNA DNA 107 185 -4 342 319 138 17 chr1 75664437 75664669 -166999684 - MIR SINE MIR 0 262 3 1112 210 69 115 chr1 75664913 75665270 -166999083 - MER66A LTR ERV1 -1 477 193 2108 109 0 3 chr1 75665270 75665596 -166998757 - AluSc SINE Alu 0 325 1 1112 210 69 115 chr1 75665596 75665689 -166998664 - MER66A LTR ERV1 -285 193 97 2077 155 8 11 chr1 75665789 75666143 -166998210 - MER66A-int LTR ERV1 0 6676 6324 1122 150 22 44 chr1 75666221 75666405 -166997948 - MER66-int LTR ERV1 -1848 4828 4648 2153 112 7 7 chr1 75666405 75666701 -166997652 - AluSg SINE Alu -14 296 1 1122 150 22 44 chr1 75666701 75666743 -166997610 - MER66-int LTR ERV1 -2028 4648 4607 207 0 0 0 chr1 75666761 75666784 -166997569 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 456 213 9 37 chr1 75666839 75666947 -166997406 - MER4D LTR ERV1 -712 160 56 846 124 7 20 chr1 75666948 75667101 -166997252 - MER66-int LTR ERV1 -2221 4455 4305 16767 168 24 8 chr1 75667110 75670224 -166994129 + L1PA14 LINE L1 4 3068 -4531 2181 115 109 0 chr1 75670224 75670564 -166993789 + MER51B LTR ERV1 1 377 0 16767 168 24 8 chr1 75670564 75674503 -166989850 + L1PA14 LINE L1 3068 7444 -155 248 194 56 0 chr1 75674604 75674748 -166989605 + (TCTA)n Simple_repeat Simple_repeat 4 155 0 351 184 40 0 chr1 75674780 75674932 -166989421 + (TCTA)n Simple_repeat Simple_repeat 1 158 0 248 54 0 27 chr1 75674934 75674971 -166989382 + (TA)n Simple_repeat Simple_repeat 1 36 0 2475 101 36 5 chr1 75674988 75675374 -166988979 - MLT2A1 LTR ERVL -46 398 1 647 274 96 14 chr1 75675899 75676107 -166988246 + MIR SINE MIR 4 228 -34 311 146 61 98 chr1 75677137 75677219 -166987134 - L1MC1 LINE L1 -6 6327 6249 200 83 0 28 chr1 75677564 75677600 -166986753 + (ATG)n Simple_repeat Simple_repeat 1 35 0 1453 174 34 17 chr1 75678231 75678529 -166985824 - MER89 LTR ERV1 -10 549 247 758 85 0 0 chr1 75678633 75678739 -166985614 + L1PA14 LINE L1 6056 6161 0 285 130 0 19 chr1 75678760 75678814 -166985539 - MER66-int LTR ERV1 -4277 2399 2347 * 3633 233 78 96 chr1 75678805 75680794 -166983559 - MER66-int LTR ERV1 -2386 4290 2336 1298 167 62 0 chr1 75680790 75681017 -166983336 - MER66-int LTR ERV1 -4518 2158 1918 * 345 335 88 12 chr1 75681206 75681376 -166982977 + MIR3 SINE MIR 19 201 -7 195 222 89 0 chr1 75681398 75681443 -166982910 - L2 LINE L2 -1 3271 3223 299 224 54 88 chr1 75681915 75682062 -166982291 - MIR SINE MIR -56 206 65 401 352 48 0 chr1 75682258 75682403 -166981950 - L2 LINE L2 0 3272 3121 1985 195 48 94 chr1 75682545 75683130 -166981223 + MLT1F1 LTR MaLR 10 567 0 354 299 7 0 chr1 75683178 75683325 -166981028 + L1MCa LINE L1 1137 1284 -5256 2148 264 62 44 chr1 75683354 75683454 -166980899 + L1MCa LINE L1 1608 1705 -4835 1448 221 14 11 chr1 75683454 75683734 -166980619 + AluJo SINE Alu 1 281 -31 2148 264 62 44 chr1 75683734 75684197 -166980156 + L1MCa LINE L1 1705 2158 -4382 2389 65 7 3 chr1 75684197 75684505 -166979848 - AluY SINE Alu -2 309 1 2148 264 62 44 chr1 75684505 75685969 -166978384 + L1MCa LINE L1 2158 3660 -2880 420 276 146 51 chr1 75686761 75687055 -166977298 + L1MCa LINE L1 1550 1797 -4743 335 226 161 28 chr1 75687250 75687400 -166976953 - MLT1L LTR MaLR -193 390 231 985 206 113 7 chr1 75687918 75688210 -166976143 + MER5C DNA MER1_type 1 323 -1 2222 58 0 25 chr1 75688278 75688556 -166975797 - AluY SINE Alu -14 297 27 516 309 74 26 chr1 75689337 75689648 -166974705 + L1MCa LINE L1 4196 4521 -2019 510 62 0 0 chr1 75690850 75690914 -166973439 - Alu SINE Alu -13 299 236 1697 142 17 19 chr1 75690977 75691323 -166973030 - MER4A LTR ERV1 0 664 261 436 204 10 10 chr1 75691323 75691421 -166972932 - MER4A LTR ERV1 -566 98 1 956 323 45 40 chr1 75691554 75692161 -166972192 + L1PA16 LINE L1 788 1397 -6177 346 295 56 13 chr1 75692159 75692357 -166971996 + L1PA16 LINE L1 2086 2298 -5276 * 11374 187 67 54 chr1 75692556 75693972 -166970381 + L1PA13 LINE L1 1 1397 -5400 6967 66 26 0 chr1 75693972 75694846 -166969507 - MER11D LTR ERVK 0 897 1 11374 187 67 54 chr1 75694846 75696259 -166968094 + L1PA13 LINE L1 1397 2790 -4007 1991 151 146 11 chr1 75696259 75696636 -166967717 - MSTA LTR MaLR 0 428 1 11374 187 67 54 chr1 75696636 75698429 -166965924 + L1PA13 LINE L1 2790 4698 -2099 6229 96 6 16 chr1 75698429 75698472 -166965881 + L1PA13 LINE L1 4918 4960 -1854 1777 100 8 4 chr1 75698472 75698711 -166965642 + AluY SINE Alu 61 300 -11 6229 96 6 16 chr1 75698711 75700559 -166963794 + L1PA13 LINE L1 4960 6808 -6 1721 114 11 0 chr1 75700302 75700565 -166963788 + L1PA13 LINE L1 6549 6814 0 21 0 0 0 chr1 75701199 75701220 -166963133 + AT_rich Low_complexity Low_complexity 1 21 0 12736 220 31 16 chr1 75701298 75706437 -166957916 + L1PA16 LINE L1 2416 7604 0 365 371 68 11 chr1 75706491 75706771 -166957582 + L1M4 LINE L1 4763 5058 -1088 1217 66 0 12 chr1 75706877 75707044 -166957309 + MER9 LTR ERVK 1 165 -346 219 222 0 0 chr1 75708369 75708414 -166955939 + (CAGT)n Simple_repeat Simple_repeat 4 48 0 5197 207 108 56 chr1 75708530 75709374 -166954979 + L1MDa LINE L1 14 813 -5727 8428 38 0 0 chr1 75709374 75711154 -166953199 - L1PA4 LINE L1 0 6155 4364 5197 207 108 56 chr1 75711154 75711379 -166952974 + L1MDa LINE L1 813 1025 -5515 2169 134 7 0 chr1 75711379 75711677 -166952676 + AluSx SINE Alu 1 300 -12 5197 207 108 56 chr1 75711677 75713108 -166951245 + L1MDa LINE L1 1025 2826 -3714 1049 236 42 15 chr1 75713110 75713444 -166950909 + L1MDa LINE L1 2885 3227 -3313 650 275 23 9 chr1 75713549 75713898 -166950455 + L1MDa LINE L1 3491 3844 -2696 618 222 117 19 chr1 75714001 75714258 -166950095 + L1MDa LINE L1 4686 4967 -1573 480 204 6 102 chr1 75714259 75714301 -166950052 + L1MD1 LINE L1 5922 5966 -276 2330 110 3 0 chr1 75714301 75714602 -166949751 + AluSx SINE Alu 1 302 -10 480 204 6 102 chr1 75714602 75714726 -166949627 + L1MD1 LINE L1 5966 6072 -170 226 330 55 37 chr1 75714796 75714905 -166949448 - MIR SINE MIR -77 131 21 260 203 16 0 chr1 75714914 75714978 -166949375 + MER116 DNA Mariner 1 65 -15 199 379 35 17 chr1 75715734 75715850 -166948503 + MIR SINE MIR 34 141 -67 27 0 0 0 chr1 75716055 75716082 -166948271 + AT_rich Low_complexity Low_complexity 1 27 0 815 236 79 19 chr1 75716784 75717000 -166947353 + MIR SINE MIR 3 231 -31 194 339 0 0 chr1 75717072 75717134 -166947219 - L2 LINE L2 -226 3046 2985 244 254 127 92 chr1 75717375 75717548 -166946805 - L2 LINE L2 -12 3301 3123 15651 208 15 32 chr1 75717711 75722357 -166941996 + L1P3 LINE L1 13 4598 -1863 10262 87 17 35 chr1 75722459 75724636 -166939717 - HERVH LTR ERV1 -5452 2261 1 2188 72 8 2 chr1 75724638 75724995 -166939358 - LTR7 LTR ERV1 -2 448 1 214 323 87 39 chr1 75725535 75725662 -166938691 + MIR3 SINE MIR 55 187 -21 521 131 0 56 chr1 75725672 75725779 -166938574 + L1PB4 LINE L1 6055 6155 -1 378 222 12 12 chr1 75725837 75725918 -166938435 + L2 LINE L2 3225 3305 -8 1178 200 90 60 chr1 75726256 75726722 -166937631 - LTR24B LTR ERV1 -7 569 90 22 0 0 0 chr1 75726803 75726825 -166937528 + AT_rich Low_complexity Low_complexity 1 22 0 2109 131 9 19 chr1 75726984 75727442 -166936911 - LTR26B LTR ERV1 0 531 1 359 203 308 0 chr1 75727779 75727922 -166936431 - MIR SINE MIR 0 262 76 908 263 64 80 chr1 75728503 75728715 -166935638 + L2 LINE L2 2818 3032 -281 2460 38 24 0 chr1 75728715 75729008 -166935345 + AluY SINE Alu 1 300 -11 908 263 64 80 chr1 75729008 75729297 -166935056 + L2 LINE L2 3032 3311 -2 1489 126 27 0 chr1 75729417 75729640 -166934713 + MER30 DNA MER1_type 1 229 -1 3963 82 2 5 chr1 75729856 75730416 -166933937 + L1PA10 LINE L1 5462 6019 -149 1062 68 41 0 chr1 75730590 75730736 -166933617 + L1PA11 LINE L1 6021 6172 -2 332 251 34 97 chr1 75730917 75731064 -166933289 + MIR SINE MIR 25 160 -65 768 264 50 28 chr1 75731073 75731476 -166932877 - LTR33 LTR ERVL -54 467 20 464 193 24 0 chr1 75732904 75732987 -166931366 - L2 LINE L2 -610 2704 2620 387 41 0 0 chr1 75732994 75733043 -166931310 + (CA)n Simple_repeat Simple_repeat 1 49 0 4944 128 21 5 chr1 75733576 75734583 -166929770 + L1PA11 LINE L1 4518 5533 -635 3873 90 8 0 chr1 75734586 75735117 -166929236 + L1PA11 LINE L1 5638 6172 -2 190 289 40 0 chr1 75735173 75735249 -166929104 - MIR SINE MIR -58 204 126 27 0 0 0 chr1 75735432 75735459 -166928894 + AT_rich Low_complexity Low_complexity 1 27 0 693 262 237 25 chr1 75736275 75736672 -166927681 + L2 LINE L2 2815 3295 -18 774 97 0 0 chr1 75736863 75736976 -166927377 + (GGAA)n Simple_repeat Simple_repeat 2 114 0 301 333 117 12 chr1 75736978 75737149 -166927204 + MIR3 SINE MIR 19 207 -1 387 263 172 24 chr1 75737486 75737695 -166926658 + MIR SINE MIR 20 259 -3 25 0 0 0 chr1 75739051 75739076 -166925277 + AT_rich Low_complexity Low_complexity 1 25 0 326 343 0 9 chr1 75739263 75739368 -166924985 + MIR SINE MIR 1 104 -158 236 234 57 65 chr1 75740241 75740365 -166923988 + MLT1H LTR MaLR 50 172 -377 302 287 0 40 chr1 75741048 75741149 -166923204 + L2 LINE L2 3213 3309 -4 1377 190 0 84 chr1 75741219 75741558 -166922795 + AluJo SINE Alu 1 313 0 571 266 38 101 chr1 75741680 75741947 -166922406 - MIR SINE MIR -1 261 12 603 326 84 12 chr1 75742857 75743398 -166920955 - MLT1L LTR MaLR -2 613 3 248 294 29 0 chr1 75743513 75743581 -166920772 - MIR SINE MIR -70 138 69 1082 136 6 11 chr1 75744538 75744714 -166919639 - Tigger2 DNA MER2_type -10 2708 2534 2981 69 15 0 chr1 75744714 75745107 -166919246 + MLT2A1 LTR ERVL 1 399 -45 209 247 27 0 chr1 75745122 75745195 -166919158 + (TA)n Simple_repeat Simple_repeat 2 76 0 300 51 271 0 chr1 75745196 75745255 -166919098 + MLT2A1 LTR ERVL 370 444 0 12211 138 78 30 chr1 75745255 75747408 -166916945 - Tigger2 DNA MER2_type -170 2548 268 2455 57 0 7 chr1 75747408 75747707 -166916646 - AluY SINE Alu -14 297 1 12211 138 78 30 chr1 75747707 75747924 -166916429 - Tigger2 DNA MER2_type -2450 268 63 1270 39 0 22 chr1 75747924 75748102 -166916251 + L1PA13 LINE L1 5930 6103 -60 616 88 0 20 chr1 75748116 75748218 -166916135 - Tigger2 DNA MER2_type -1708 1010 911 807 141 35 14 chr1 75748218 75748360 -166915993 - Tigger2 DNA MER2_type -1913 805 661 396 83 17 0 chr1 75748397 75748457 -166915896 - Tigger2 DNA MER2_type -2657 61 1 439 255 131 0 chr1 75748489 75748642 -166915711 + L1M4 LINE L1 3043 3215 -2931 1605 165 92 0 chr1 75748850 75749166 -166915187 - MER7A DNA MER2_type -2 344 2 25 0 0 0 chr1 75749208 75749233 -166915120 + AT_rich Low_complexity Low_complexity 1 25 0 822 272 82 13 chr1 75749324 75749561 -166914792 + MIR SINE MIR 3 254 -8 189 425 0 0 chr1 75749582 75749669 -166914684 - MIR SINE MIR -92 116 30 3323 160 51 19 chr1 75750456 75751193 -166913160 + LTR1B LTR ERV1 1 785 0 538 354 41 21 chr1 75752358 75752601 -166911752 + MIR SINE MIR 1 248 -14 532 240 67 49 chr1 75752658 75752883 -166911470 - L2 LINE L2 -57 3256 3028 22 0 0 0 chr1 75752933 75752955 -166911398 + AT_rich Low_complexity Low_complexity 1 22 0 350 253 189 0 chr1 75752956 75753051 -166911302 + L2 LINE L2 3193 3305 -8 230 387 80 29 chr1 75753811 75754049 -166910304 - MIR SINE MIR -5 257 8 2016 143 16 60 chr1 75754972 75755356 -166908997 - MLT1B LTR MaLR 0 390 24 198 327 36 30 chr1 75755375 75755523 -166908830 + L2 LINE L2 1902 2053 -1261 1542 197 0 39 chr1 75755523 75755833 -166908520 - AluJo SINE Alu -10 302 5 198 327 36 30 chr1 75755833 75755852 -166908501 + L2 LINE L2 2053 2070 -1244 923 295 24 24 chr1 75756097 75756395 -166907958 - MER89 LTR ERV1 -261 298 1 396 292 134 22 chr1 75756897 75757174 -166907179 - MLT1J LTR MaLR -200 311 4 1819 131 49 0 chr1 75758731 75758998 -166905355 + AluSx SINE Alu 1 280 -32 204 40 0 0 chr1 75758999 75759024 -166905329 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 212 303 15 0 chr1 75759326 75759392 -166904961 + GA-rich Low_complexity Low_complexity 3 69 0 1292 72 5 46 chr1 75759570 75759764 -166904589 - L1PA5 LINE L1 -3 6151 5966 1373 205 116 19 chr1 75760431 75760792 -166903561 - MSTD LTR MaLR 0 396 1 656 213 77 19 chr1 75760800 75760955 -166903398 + MER5B DNA MER1_type 14 177 -1 311 314 16 59 chr1 75760973 75761125 -166903228 + MIR3 SINE MIR 19 163 -45 246 283 92 50 chr1 75761484 75761604 -166902749 - MLT1L LTR MaLR -349 266 142 216 332 57 82 chr1 75761668 75761912 -166902441 - L2 LINE L2 -19 3253 3016 211 300 25 25 chr1 75762379 75762459 -166901894 - MER5A DNA MER1_type 0 189 110 186 297 16 62 chr1 75762558 75762622 -166901731 + MIR SINE MIR 21 81 -127 200 79 26 53 chr1 75763508 75763546 -166900807 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 535 352 128 22 chr1 75763625 75764306 -166900047 - L2 LINE L2 -1740 1574 822 520 197 221 19 chr1 75764319 75764527 -166899826 + MER112 DNA MER1_type 11 260 0 366 322 92 0 chr1 75764539 75764691 -166899662 - L2 LINE L2 -2526 788 623 293 57 0 0 chr1 75764691 75764726 -166899627 - U2 snRNA snRNA -153 35 1 193 323 0 31 chr1 75765164 75765229 -166899124 + MIR SINE MIR 95 157 -105 1055 147 5 0 chr1 75765241 75765425 -166898928 + L1MA6 LINE L1 6111 6295 -5 25 31 0 0 chr1 75765430 75765462 -166898891 + AT_rich Low_complexity Low_complexity 1 32 0 292 312 11 11 chr1 75765462 75765555 -166898798 - L3 LINE CR1 -9 1568 1476 218 280 93 0 chr1 75765632 75765707 -166898646 - MIR SINE MIR -57 205 124 23 92 0 0 chr1 75766415 75766480 -166897873 + AT_rich Low_complexity Low_complexity 1 65 0 298 331 23 23 chr1 75766632 75766765 -166897588 + MER5B DNA MER1_type 1 133 -45 24 53 0 0 chr1 75766766 75766804 -166897549 + AT_rich Low_complexity Low_complexity 1 38 0 258 219 24 61 chr1 75766827 75766909 -166897444 + MER5B DNA MER1_type 100 178 0 209 281 59 126 chr1 75767132 75767402 -166896951 - L2 LINE L2 -7 3265 3014 1195 256 147 5 chr1 75767436 75767823 -166896530 - MER110 LTR ERV1 -12 479 38 1845 144 22 151 chr1 75767828 75768238 -166896115 - LTR18A LTR ERVL 0 357 1 314 200 0 0 chr1 75768403 75768453 -166895900 - HERVL18 LTR ERVL -789 5258 5209 671 137 0 0 chr1 75768453 75768548 -166895805 - HERVL18 LTR ERVL -1559 4488 4394 * 5709 164 0 1 chr1 75768544 75769411 -166894942 - HERVL18 LTR ERVL -2462 3585 2720 1189 158 130 0 chr1 75769410 75769687 -166894666 - HERVL18 LTR ERVL -3063 2334 2078 * 2628 183 5 20 chr1 75769686 75770733 -166893620 - HERVL18 LTR ERVL -4237 1810 9 1953 126 8 153 chr1 75770758 75771156 -166893197 - LTR18A LTR ERVL -17 340 1 935 107 14 0 chr1 75771351 75771491 -166892862 + THE1C-int LTR MaLR 1439 1580 0 2010 121 73 20 chr1 75771492 75771847 -166892506 + THE1C LTR MaLR 2 375 0 1397 161 22 33 chr1 75771847 75772121 -166892232 + THE1C LTR MaLR 105 375 0 5931 201 9 14 chr1 75772123 75773398 -166890955 - L1 LINE L1 -1558 4588 3321 887 364 17 14 chr1 75773391 75773745 -166890608 - L1PA13 LINE L1 -6432 355 1 * 516 164 0 23 chr1 75774310 75774438 -166889915 + (TA)n Simple_repeat Simple_repeat 2 126 0 320 246 123 8 chr1 75774438 75774568 -166889785 - MIR SINE MIR -4 258 114 29 47 0 0 chr1 75774683 75774726 -166889627 + AT_rich Low_complexity Low_complexity 1 43 0 221 338 0 0 chr1 75774963 75775037 -166889316 + (TA)n Simple_repeat Simple_repeat 2 75 0 951 195 37 107 chr1 75775037 75775489 -166888864 - MLT2D LTR ERVL -40 480 3 704 212 13 20 chr1 75775670 75775821 -166888532 - MER5B DNA MER1_type -2 176 27 696 251 52 109 chr1 75776343 75776828 -166887525 + LTR16A1 LTR ERVL 1 457 0 5931 183 18 20 chr1 75777138 75777365 -166886988 + L1MC1 LINE L1 4628 4854 -1479 2253 118 0 0 chr1 75777365 75777671 -166886682 - AluSp SINE Alu -7 306 1 5931 183 18 20 chr1 75777671 75779149 -166885204 + L1MC1 LINE L1 4854 6333 0 265 292 26 45 chr1 75779175 75779329 -166885024 - L1MEc LINE L1 -5515 881 731 * 827 276 89 29 chr1 75779325 75779887 -166884466 - L1MEc LINE L1 -4454 2126 1499 722 232 30 0 chr1 75779893 75780057 -166884296 - MER45A DNA AcHobo 0 178 10 1767 287 61 42 chr1 75780075 75780501 -166883852 - L1MEc LINE L1 -4678 1458 1042 2060 184 3 16 chr1 75780501 75780871 -166883482 + MLT1A1 LTR MaLR 1 365 0 1767 287 61 42 chr1 75780871 75781568 -166882785 - L1MEc LINE L1 -5094 1042 51 1903 126 128 72 chr1 75781691 75782096 -166882257 + MSTA LTR MaLR 1 428 0 27 62 0 0 chr1 75782891 75782939 -166881414 + AT_rich Low_complexity Low_complexity 1 48 0 21 71 0 0 chr1 75783352 75783394 -166880959 + AT_rich Low_complexity Low_complexity 1 42 0 7078 53 19 0 chr1 75783519 75785113 -166879240 - L1PA7 LINE L1 0 6154 4535 3897 66 29 0 chr1 75785113 75785628 -166878725 + L1PA7 LINE L1 4021 4550 -1596 384 324 36 81 chr1 75785794 75786016 -166878337 + L2 LINE L2 3030 3241 -31 1123 15 0 8 chr1 75786733 75786915 -166877438 + L1PA2 LINE L1 6020 6200 0 419 331 43 0 chr1 75787610 75787749 -166876604 + MIR3 SINE MIR 40 184 -24 7152 44 10 0 chr1 75788151 75789044 -166875309 + L1PA5 LINE L1 5233 6131 -23 402 21 0 0 chr1 75789049 75789096 -166875257 + (GA)n Simple_repeat Simple_repeat 2 48 0 252 0 0 0 chr1 75789124 75789152 -166875201 + (T)n Simple_repeat Simple_repeat 1 28 0 191 59 0 29 chr1 75789178 75789212 -166875141 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 387 148 0 178 chr1 75789451 75789552 -166874801 + FLAM_A SINE Alu 43 125 -8 288 294 0 0 chr1 75791091 75791176 -166873177 - MLT1I LTR MaLR -7 402 318 333 264 168 37 chr1 75791190 75791411 -166872942 - MLT1J2 LTR MaLR -168 278 41 198 208 0 0 chr1 75791576 75791624 -166872729 + (TA)n Simple_repeat Simple_repeat 2 49 0 400 301 17 0 chr1 75791949 75792122 -166872231 + L1M4 LINE L1 3634 3809 -2337 239 263 86 26 chr1 75792242 75792394 -166871959 + L1M4 LINE L1 3832 3992 -2154 2342 96 0 3 chr1 75792489 75792791 -166871562 + AluSx SINE Alu 3 303 -9 513 306 101 17 chr1 75792826 75793096 -166871257 + L1M4 LINE L1 4124 4421 -1725 5651 89 23 8 chr1 75793096 75793920 -166870433 + L1MA2 LINE L1 5469 6304 0 513 306 101 17 chr1 75793920 75793937 -166870416 + L1M4 LINE L1 4421 4435 -1711 1642 132 8 8 chr1 75793963 75794228 -166870125 + L1MC1 LINE L1 6069 6333 0 272 291 28 7 chr1 75794230 75794371 -166869982 + L1M4 LINE L1 4406 4549 -1597 21 71 0 0 chr1 75794399 75794441 -166869912 + AT_rich Low_complexity Low_complexity 1 42 0 816 215 207 0 chr1 75794589 75794850 -166869503 - MLT1G LTR MaLR -3 587 273 22 35 0 0 chr1 75795061 75795090 -166869263 + AT_rich Low_complexity Low_complexity 1 29 0 1983 147 3 13 chr1 75795199 75795511 -166868842 - AluJb SINE Alu -3 309 1 188 345 0 0 chr1 75796134 75796189 -166868164 + L2 LINE L2 3205 3259 -13 22 35 0 0 chr1 75796798 75796827 -166867526 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 75796917 75796938 -166867415 + AT_rich Low_complexity Low_complexity 1 21 0 292 286 12 12 chr1 75797334 75797418 -166866935 + L2 LINE L2 3225 3308 -5 357 325 65 12 chr1 75797475 75797644 -166866709 - MIR SINE MIR -22 240 63 44372 36 0 1 chr1 75797834 75804001 -166860352 + L1PA3 LINE L1 1 6159 0 2571 77 122 10 chr1 75805121 75805524 -166858829 - LTR7 LTR ERV1 -2 448 1 2386 95 48 13 chr1 75805524 75805903 -166858450 - HERVH LTR ERV1 0 7713 7322 1329 134 23 9 chr1 75805901 75806118 -166858235 - HERVH LTR ERV1 -1894 5819 5600 * 4213 142 8 3 chr1 75806122 75806778 -166857575 - HERVH LTR ERV1 -2567 5146 4488 3368 108 6 6 chr1 75806780 75807282 -166857071 - HERVH LTR ERV1 -3720 3993 3492 859 131 41 0 chr1 75807272 75807417 -166856936 - HERVH LTR ERV1 -4423 3290 3140 * 4224 121 0 11 chr1 75807411 75808080 -166856273 - HERVH LTR ERV1 -4726 2987 2326 477 261 211 12 chr1 75808322 75808483 -166855870 - MIR SINE MIR -6 256 64 250 413 11 0 chr1 75808518 75808610 -166855743 + L2 LINE L2 3136 3228 -44 405 334 131 55 chr1 75808683 75809815 -166854538 + L2 LINE L2 2038 3264 -8 703 194 0 14 chr1 75810922 75811103 -166853250 + FLAM_C SINE Alu 1 179 0 1081 266 97 40 chr1 75811208 75811682 -166852671 + LTR33 LTR ERVL 1 501 -20 644 175 0 51 chr1 75811873 75812182 -166852171 + AluJb SINE Alu 183 484 0 564 216 82 0 chr1 75813305 75813439 -166850914 + L1ME3A LINE L1 6011 6155 -15 1636 115 0 4 chr1 75813868 75814102 -166850251 + LOR1a LTR ERV1 1 233 -264 1350 287 91 8 chr1 75814202 75814699 -166849654 + L2 LINE L2 2787 3313 0 5349 113 52 60 chr1 75814767 75815666 -166848687 - THE1B-int LTR MaLR -688 892 1 1196 112 6 0 chr1 75815666 75815836 -166848517 - THE1B LTR MaLR 0 364 194 869 292 111 55 chr1 75816511 75817143 -166847210 + L2 LINE L2 2662 3312 -1 586 125 0 11 chr1 75817790 75817878 -166846475 + FLAM_C SINE Alu 37 123 -20 237 65 0 0 chr1 75817957 75817988 -166846365 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 678 299 98 8 chr1 75818107 75818436 -166845917 + L1M3c LINE L1 723 1130 -5011 933 291 267 20 chr1 75819106 75819701 -166844652 + L1MA6 LINE L1 215 956 -5893 2591 254 129 25 chr1 75820054 75821414 -166842939 + L1MA6 LINE L1 756 2351 -4497 1255 215 3 19 chr1 75821415 75821726 -166842627 + L1MA6 LINE L1 3904 4209 -2639 4072 213 10 9 chr1 75821836 75822716 -166841637 + L1MA6 LINE L1 4205 5085 -1763 3069 202 18 56 chr1 75822693 75823023 -166841330 + L1MA6 LINE L1 5324 5665 -1337 * 1881 78 66 0 chr1 75823023 75823292 -166841061 + AluY SINE Alu 27 311 0 3069 202 18 56 chr1 75823292 75824408 -166839945 + L1MA6 LINE L1 5665 6743 -259 * 4875 144 24 11 chr1 75823667 75824507 -166839846 + L1PB4 LINE L1 5995 6845 -13 456 262 14 55 chr1 75826071 75826216 -166838137 - MIR SINE MIR -66 196 58 1811 163 7 17 chr1 75826755 75827056 -166837297 + AluJb SINE Alu 1 298 -14 215 289 66 26 chr1 75827913 75827989 -166836364 + L2 LINE L2 2732 2810 -504 34 42 0 0 chr1 75828259 75828307 -166836046 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 75828456 75828478 -166835875 + AT_rich Low_complexity Low_complexity 1 22 0 1038 78 7 7 chr1 75828648 75828801 -166835552 - L1PA12 LINE L1 0 6168 6016 448 298 112 25 chr1 75829419 75829704 -166834649 - MLT1L LTR MaLR -10 605 296 2101 199 47 45 chr1 75829748 75830256 -166834097 + LTR53 LTR ERVL 4 512 -7 445 267 143 42 chr1 75830269 75830486 -166833867 - MLT1L LTR MaLR -338 277 39 263 331 114 18 chr1 75830691 75830857 -166833496 - MIR SINE MIR -72 190 9 1892 186 49 40 chr1 75831499 75831928 -166832425 + MLT1D LTR MaLR 1 433 -72 393 267 42 120 chr1 75831955 75832112 -166832241 + MIR SINE MIR 20 157 -105 2298 161 30 7 chr1 75832112 75832517 -166831836 - MLT2D LTR ERVL 0 414 1 393 267 42 120 chr1 75832517 75832576 -166831777 + MIR SINE MIR 157 219 -43 281 364 51 23 chr1 75832637 75832813 -166831540 + MIR SINE MIR 20 200 -62 386 310 111 23 chr1 75833313 75833484 -166830869 + MIR SINE MIR 13 198 -64 361 253 11 53 chr1 75834350 75834445 -166829908 - L2 LINE L2 0 3272 3182 541 294 94 43 chr1 75835003 75835279 -166829074 - L2 LINE L2 -227 3086 2770 2329 120 115 8 chr1 75835599 75835981 -166828372 - MSTA LTR MaLR 0 428 6 2328 110 0 0 chr1 75836375 75836684 -166827669 + AluSx SINE Alu 1 309 -3 371 297 138 14 chr1 75838520 75838658 -166825695 - MIR SINE MIR -88 174 20 22 35 0 0 chr1 75839739 75839768 -166824585 + AT_rich Low_complexity Low_complexity 1 29 0 206 195 49 0 chr1 75841261 75841302 -166823051 + L2 LINE L2 3222 3264 -8 328 268 221 26 chr1 75841844 75842034 -166822319 - MIR SINE MIR 0 262 36 336 264 174 0 chr1 75842187 75842308 -166822045 + L2 LINE L2 3162 3303 -10 33 25 0 0 chr1 75842568 75842608 -166821745 + AT_rich Low_complexity Low_complexity 1 40 0 4294 179 46 40 chr1 75842610 75843239 -166821114 + L1MB2 LINE L1 4671 5295 -876 1528 191 19 0 chr1 75843239 75843501 -166820852 + AluJo SINE Alu 11 277 -35 4294 179 46 40 chr1 75843501 75844365 -166819988 + L1MB2 LINE L1 5295 6171 0 2494 301 114 17 chr1 75845257 75846398 -166817955 - L2 LINE L2 -798 2516 1265 310 275 25 33 chr1 75846517 75846637 -166817716 + L2 LINE L2 3191 3309 -4 2034 120 27 0 chr1 75847500 75847800 -166816553 + AluSx SINE Alu 3 310 -2 385 66 33 0 chr1 75847800 75847861 -166816492 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 1927 206 70 4 chr1 75848086 75848556 -166815797 - L1ME1 LINE L1 -25 6141 5641 21 36 0 0 chr1 75848569 75848597 -166815756 + AT_rich Low_complexity Low_complexity 1 28 0 547 39 26 0 chr1 75849945 75850023 -166814330 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 377 193 60 24 chr1 75850023 75850106 -166814247 - MER2 DNA MER2_type -2 343 258 980 170 11 16 chr1 75850459 75850647 -166813706 - L1PA7 LINE L1 -2 6152 5966 3257 65 16 0 chr1 75851134 75851582 -166812771 - L1P LINE L1 -743 5403 4949 729 259 50 58 chr1 75851697 75852025 -166812328 + MLT1J2 LTR MaLR 1 323 -86 2418 69 0 7 chr1 75852025 75852331 -166812022 - AluY SINE Alu -7 304 1 729 259 50 58 chr1 75852331 75852381 -166811972 + MLT1J2 LTR MaLR 323 372 -37 287 350 10 10 chr1 75853316 75853510 -166810843 - L1MC4a LINE L1 -1894 5914 5721 294 333 20 0 chr1 75854430 75854532 -166809821 - MIR3 SINE MIR -28 180 77 2273 80 13 6 chr1 75906745 75907056 -166757297 + AluSq SINE Alu 1 313 0 1895 157 0 3 chr1 75907250 75907549 -166756804 - AluJb SINE Alu -10 302 5 659 293 98 50 chr1 75907555 75907951 -166756402 - Charlie8 DNA MER1_type -1918 499 85 497 299 4 111 chr1 75908513 75908545 -166755808 + MIR SINE MIR 5 39 -223 1346 215 16 23 chr1 75908545 75908852 -166755501 + AluJo SINE Alu 1 305 -7 497 299 4 111 chr1 75908852 75909080 -166755273 + MIR SINE MIR 39 237 -25 228 158 0 0 chr1 75909742 75909780 -166754573 + L2 LINE L2 3171 3208 -64 424 272 228 7 chr1 75911211 75911667 -166752686 - L1M4 LINE L1 -2927 3219 2663 256 192 19 0 chr1 75911850 75911954 -166752399 + (TA)n Simple_repeat Simple_repeat 1 106 0 2148 117 0 0 chr1 75911956 75912239 -166752114 - AluSx SINE Alu -21 291 9 286 278 112 10 chr1 75912246 75912559 -166751794 - L1M4 LINE L1 -3658 2488 2144 633 303 31 8 chr1 75912657 75912911 -166751442 - MIR SINE MIR 0 262 3 789 275 153 24 chr1 75913117 75913528 -166750825 + MLT1G LTR MaLR 127 590 0 4089 146 18 3 chr1 75914275 75914955 -166749398 + L1PA16 LINE L1 5460 6149 -17 313 332 101 49 chr1 75915087 75915515 -166748838 - LTR67 LTR ERVL -52 505 56 620 262 84 59 chr1 75915893 75916764 -166747589 + HAL1b LINE L1 281 1223 -125 334 284 22 87 chr1 75916771 75916954 -166747399 + HAL1b LINE L1 473 643 -705 259 186 85 0 chr1 75916998 75917057 -166747296 + MER110A LTR ERV1 1 64 -404 1923 108 0 25 chr1 75917116 75917393 -166746960 + AluSc SINE Alu 1 270 -39 778 136 17 28 chr1 75917417 75917593 -166746760 + GA-rich Low_complexity Low_complexity 1 174 0 1673 206 71 11 chr1 75917752 75918190 -166746163 + MER110A LTR ERV1 4 467 -1 1934 91 68 0 chr1 75918371 75918634 -166745719 + AluY SINE Alu 1 281 -30 1764 179 3 10 chr1 75918722 75919024 -166745329 + AluJb SINE Alu 2 301 -11 201 309 127 55 chr1 75919162 75919272 -166745081 + MER5A DNA MER1_type 72 189 0 413 320 41 31 chr1 75919523 75919717 -166744636 + L2 LINE L2 3117 3312 -1 524 235 59 0 chr1 75920065 75920167 -166744186 + MER58C DNA MER1_type 2 109 -106 21 0 0 0 chr1 75920300 75920321 -166744032 + AT_rich Low_complexity Low_complexity 1 21 0 968 104 0 0 chr1 75922237 75922362 -166741991 - AluSq/x SINE Alu -187 125 1 383 221 36 79 chr1 75922363 75922503 -166741850 + MER58C DNA MER1_type 78 211 -4 1154 294 56 0 chr1 75922504 75922861 -166741492 - ERVL LTR ERVL -3058 2706 2330 389 206 155 10 chr1 75922902 75922999 -166741354 - MER81 DNA DNA -3 111 1 418 227 11 0 chr1 75923371 75923459 -166740894 - MLT2E LTR ERVL -8 620 532 424 125 0 0 chr1 75924620 75924684 -166739669 + AluJ/FLAM SINE Alu 1 64 -248 21 36 0 0 chr1 75925642 75925670 -166738683 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 75925997 75926019 -166738334 + AT_rich Low_complexity Low_complexity 1 22 0 202 315 0 19 chr1 75926742 75926796 -166737557 + L2 LINE L2 3246 3298 -15 1405 212 3 24 chr1 75926811 75927104 -166737249 - AluJo SINE Alu -15 287 1 2166 144 0 0 chr1 75927499 75927805 -166736548 + AluSx SINE Alu 2 307 -5 195 364 21 28 chr1 75927805 75927948 -166736405 - L2 LINE L2 -193 3079 2938 1218 280 62 36 chr1 75928106 75928609 -166735744 - LTR33 LTR ERVL -5 516 1 2472 41 0 3 chr1 75928718 75929010 -166735343 + AluY SINE Alu 2 292 -19 226 337 122 23 chr1 75929038 75929210 -166735143 - L2 LINE L2 -716 2598 2410 473 176 84 61 chr1 75929222 75929353 -166735000 + AluJb SINE Alu 1 134 -178 2015 131 3 0 chr1 75929734 75930025 -166734328 + AluSx SINE Alu 1 292 -20 706 208 140 45 chr1 75930112 75930517 -166733836 + MLT1A1 LTR MaLR 2 363 -2 600 284 64 30 chr1 75930518 75930813 -166733540 - MLT1L LTR MaLR -6 609 224 250 203 169 8 chr1 75930834 75930952 -166733401 + L1ME4a LINE L1 5984 6120 -1 393 288 9 0 chr1 75931958 75932069 -166732284 + MIR SINE MIR 32 143 -119 4417 126 34 78 chr1 75932203 75933126 -166731227 - L1MA6 LINE L1 0 6300 5419 22 35 0 0 chr1 75933840 75933869 -166730484 + AT_rich Low_complexity Low_complexity 1 29 0 1559 128 29 32 chr1 75933959 75934284 -166730069 - L1MA6 LINE L1 -743 5403 5105 6373 125 41 0 chr1 75934285 75935259 -166729094 - Tigger1 DNA MER2_type -1049 1369 356 620 141 33 41 chr1 75935234 75935355 -166728998 - LTR23 LTR ERV1 -317 120 1 * 2337 94 0 13 chr1 75935475 75935784 -166728569 + AluSg SINE Alu 1 305 -5 253 311 100 83 chr1 75936444 75936795 -166727558 - L2 LINE L2 -486 2828 2472 449 252 72 9 chr1 75937246 75937357 -166726996 - MER5A DNA MER1_type 0 189 72 289 322 63 40 chr1 75937384 75937495 -166726858 + MER5B DNA MER1_type 1 119 -59 2290 90 0 16 chr1 75937495 75937805 -166726548 - AluY SINE Alu -6 305 1 289 322 63 40 chr1 75937805 75937867 -166726486 + MER5B DNA MER1_type 119 178 0 285 329 0 0 chr1 75937867 75937949 -166726404 - MIR SINE MIR -80 182 101 738 229 50 15 chr1 75938610 75938811 -166725542 - MIR SINE MIR -49 213 6 2193 130 0 0 chr1 75939843 75940143 -166724210 - AluSx SINE Alu -8 304 5 686 266 257 31 chr1 75940173 75940971 -166723382 - HAL1 LINE L1 0 2507 1530 249 222 16 0 chr1 75940975 75941038 -166723315 + L2 LINE L2 3250 3313 0 871 204 28 6 chr1 75941219 75941400 -166722953 + MER5A DNA MER1_type 3 187 -2 265 291 9 45 chr1 75941469 75941579 -166722774 - HAL1 LINE L1 -1811 696 591 2268 91 7 3 chr1 75941892 75942247 -166722106 + AluSx SINE Alu 1 356 0 1552 186 10 28 chr1 75942932 75943222 -166721131 + AluJb SINE Alu 3 287 -25 24 0 0 0 chr1 75943229 75943253 -166721100 + AT_rich Low_complexity Low_complexity 1 24 0 1271 237 82 7 chr1 75943327 75943732 -166720621 + L1M4 LINE L1 3507 3941 -2205 255 183 0 83 chr1 75943918 75943978 -166720375 + L2 LINE L2 3259 3313 0 1671 179 14 14 chr1 75944240 75944431 -166719922 - AluJb SINE Alu 0 312 119 306 0 0 0 chr1 75944431 75944465 -166719888 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1671 179 14 14 chr1 75944465 75944585 -166719768 - AluJb SINE Alu -192 120 1 490 248 21 41 chr1 75945134 75945279 -166719074 + MIR SINE MIR 121 262 0 618 332 76 9 chr1 75945650 75945995 -166718358 - L2 LINE L2 -312 3001 2636 191 204 45 0 chr1 75946015 75946059 -166718294 - L2 LINE L2 -804 2510 2465 1913 142 10 20 chr1 75946568 75946871 -166717482 - AluJb SINE Alu -12 300 1 233 336 145 0 chr1 75948074 75948205 -166716148 + MIR SINE MIR 49 198 -64 767 144 8 0 chr1 75948258 75948383 -166715970 + FLAM_C SINE Alu 11 136 -7 2205 110 0 3 chr1 75948383 75948673 -166715680 + AluSx SINE Alu 1 289 -23 437 277 67 54 chr1 75949523 75949747 -166714606 - MIR SINE MIR 0 262 36 1768 223 13 86 chr1 75950690 75951153 -166713200 + MER21B LTR ERV1 20 448 -415 1488 165 24 4 chr1 75951166 75951420 -166712933 - AluJb SINE Alu -12 300 42 266 143 20 20 chr1 75951472 75951521 -166712832 - AluJb SINE Alu -252 49 1 1335 238 49 22 chr1 75951525 75951849 -166712504 + MER21B LTR ERV1 462 794 -69 1839 189 149 18 chr1 75951944 75952379 -166711974 + L1MD2 LINE L1 5660 6151 -208 5188 130 75 1 chr1 75952411 75953303 -166711050 - Tigger3b DNA MER2_type 0 1231 274 572 222 0 0 chr1 75953301 75953400 -166710953 - Tigger3b DNA MER2_type -1129 102 4 * 494 250 60 25 chr1 75953415 75953522 -166710831 + L1MD3 LINE L1 7787 7889 -106 1536 191 16 72 chr1 75953522 75953909 -166710444 - MLT1A1 LTR MaLR 0 365 1 494 250 60 25 chr1 75953909 75954001 -166710352 + L1MD3 LINE L1 7889 7993 -2 309 51 0 0 chr1 75954298 75954337 -166710016 + (CA)n Simple_repeat Simple_repeat 1 39 0 607 277 53 5 chr1 75955135 75955323 -166709030 - MER63A DNA MER1_type -13 197 1 321 225 0 0 chr1 75956176 75956248 -166708105 + MER91A DNA MER1_type 1 72 -124 22 0 0 0 chr1 75956735 75956757 -166707596 + AT_rich Low_complexity Low_complexity 1 22 0 291 100 0 0 chr1 75957170 75957210 -166707143 - MER4E LTR ERV1 -74 692 653 1223 210 13 8 chr1 75957339 75957577 -166706776 - MER8 DNA MER2_type 0 239 1 2205 104 0 7 chr1 75958309 75958608 -166705745 - AluSc SINE Alu -12 297 1 186 333 70 44 chr1 75958631 75958745 -166705608 + L2 LINE L2 3141 3257 -15 711 210 0 0 chr1 75958748 75958872 -166705481 + FLAM_C SINE Alu 1 124 -19 189 0 0 0 chr1 75958872 75958893 -166705460 + (TAA)n Simple_repeat Simple_repeat 2 22 0 274 375 98 23 chr1 75958953 75959217 -166705136 + L2 LINE L2 2976 3259 -13 237 311 40 0 chr1 75959239 75959313 -166705040 + GA-rich Low_complexity Low_complexity 1 77 0 10455 189 33 3 chr1 75959887 75962504 -166701849 - L1 LINE L1 -1511 6054 3356 761 124 28 6 chr1 75962527 75962784 -166701569 + AluJ SINE Alu 1 304 -8 1638 239 113 41 chr1 75962786 75962977 -166701376 - L1 LINE L1 -4213 3352 3176 2146 136 3 0 chr1 75962977 75963278 -166701075 - AluSx SINE Alu -10 302 1 1638 239 113 41 chr1 75963278 75963813 -166700540 - L1 LINE L1 -4389 3176 2574 1322 268 28 24 chr1 75963805 75964123 -166700230 - L1 LINE L1 -4278 2287 1965 * 1810 132 55 66 chr1 75964123 75964502 -166699851 - THE1C LTR MaLR 0 375 1 1322 268 28 24 chr1 75964502 75964693 -166699660 - L1 LINE L1 -4600 1965 1776 594 340 14 45 chr1 75965707 75966133 -166698220 - L1 LINE L1 -5532 1954 1542 1911 181 0 0 chr1 75966159 75966468 -166697885 - AluJb SINE Alu -3 309 1 932 213 32 36 chr1 75966544 75966983 -166697370 - MLT1D LTR MaLR -2 503 1 255 279 231 7 chr1 75967146 75967293 -166697060 - L2 LINE L2 0 3313 3134 542 240 24 0 chr1 75967301 75967426 -166696927 + L2 LINE L2 2425 2552 -762 1936 127 25 4 chr1 75967694 75967969 -166696384 - AluSq SINE Alu -32 281 1 340 269 21 62 chr1 75968099 75968244 -166696109 - MER58B DNA MER1_type -21 320 182 2302 96 0 0 chr1 75968534 75968836 -166695517 - AluSg SINE Alu -8 302 1 180 97 0 0 chr1 75969682 75969713 -166694640 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2195 70 4 0 chr1 75969718 75969990 -166694363 - AluSg SINE Alu -37 273 1 356 208 47 0 chr1 75970983 75971089 -166693264 - L1MC5 LINE L1 -68 7893 7783 21 0 0 0 chr1 75971098 75971119 -166693234 + AT_rich Low_complexity Low_complexity 1 21 0 294 29 0 0 chr1 75971582 75971617 -166692736 + (CA)n Simple_repeat Simple_repeat 2 36 0 392 199 0 139 chr1 75971691 75971796 -166692557 - L1MC5 LINE L1 -182 7779 7704 2762 12 0 28 chr1 75971796 75972116 -166692237 + AluY SINE Alu 1 311 0 392 199 0 139 chr1 75972116 75972176 -166692177 - L1MC5 LINE L1 -257 7704 7637 232 323 32 40 chr1 75972295 75972419 -166691934 + L2 LINE L2 2974 3096 -176 254 241 17 0 chr1 75972638 75972696 -166691657 - LTR16B LTR ERVL -405 59 1 381 313 0 0 chr1 75972736 75972832 -166691521 + L2 LINE L2 3217 3312 -1 1606 219 35 19 chr1 75973873 75974239 -166690114 + MLT1A2 LTR MaLR 3 374 0 2139 226 70 56 chr1 75974276 75974387 -166689966 + L1ME1 LINE L1 5364 5472 -694 4044 33 14 0 chr1 75974387 75974870 -166689483 + L1PA5 LINE L1 5661 6154 0 2139 226 70 56 chr1 75974870 75975134 -166689219 + L1ME1 LINE L1 5472 5731 -435 1921 121 17 0 chr1 75975134 75975423 -166688930 + AluSq SINE Alu 2 295 -18 2139 226 70 56 chr1 75975423 75975831 -166688522 + L1ME1 LINE L1 5731 6159 -7 25 0 0 0 chr1 75976376 75976401 -166687952 + AT_rich Low_complexity Low_complexity 1 25 0 2142 135 0 0 chr1 75976610 75976906 -166687447 - AluSx SINE Alu -16 296 1 2037 154 0 0 chr1 75976916 75977214 -166687139 - AluSx SINE Alu -14 298 1 880 264 79 4 chr1 75977217 75977497 -166686856 + L1MC/D LINE L1 5364 5664 -2144 18163 183 32 23 chr1 75977632 75981128 -166683225 - L1PA12 LINE L1 0 6819 3356 1916 165 119 16 chr1 75981128 75981516 -166682837 - MSTA LTR MaLR 0 428 1 18163 183 32 23 chr1 75981516 75981747 -166682606 - L1PA12 LINE L1 -3463 3356 3129 2261 120 3 3 chr1 75981747 75982055 -166682298 - AluSq SINE Alu -5 308 1 18163 183 32 23 chr1 75982055 75982622 -166681731 - L1PA12 LINE L1 -3690 3129 2569 2234 117 10 0 chr1 75982622 75982929 -166681424 - AluSx SINE Alu -2 310 1 18163 183 32 23 chr1 75982929 75985191 -166679162 - L1PA12 LINE L1 -4250 2569 79 263 250 0 0 chr1 75985900 75985976 -166678377 + T-rich Low_complexity Low_complexity 1 76 0 25 51 0 0 chr1 75986216 75986255 -166678098 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr1 75986355 75986378 -166677975 + AT_rich Low_complexity Low_complexity 1 23 0 2524 191 23 43 chr1 75986683 75987243 -166677110 - MER44D DNA MER2_type -1 604 1 412 228 131 0 chr1 75987546 75987691 -166676662 - MER103 DNA DNA 0 166 3 2265 114 13 0 chr1 75987962 75988270 -166676083 - AluSx SINE Alu 0 312 1 466 94 146 31 chr1 75988280 75988376 -166675977 + THE1C-int LTR MaLR 1474 1580 0 1636 154 34 40 chr1 75988376 75988552 -166675801 + THE1C LTR MaLR 1 176 -199 2383 94 3 0 chr1 75988552 75988851 -166675502 + AluSg SINE Alu 1 300 -10 1636 154 34 40 chr1 75988851 75989024 -166675329 + THE1C LTR MaLR 176 348 -27 7518 144 22 53 chr1 75989026 75990119 -166674234 - MSTA-int LTR MaLR -156 1424 387 1976 162 0 3 chr1 75990119 75990428 -166673925 + AluSx SINE Alu 1 308 -4 7518 144 22 53 chr1 75990428 75990802 -166673551 - MSTA-int LTR MaLR -1193 387 3 823 95 9 18 chr1 75990804 75990955 -166673398 - MSTA LTR MaLR 0 375 237 28 0 0 0 chr1 75990964 75990992 -166673361 + AT_rich Low_complexity Low_complexity 1 28 0 3189 179 24 28 chr1 75991001 75991234 -166673119 - MST-int LTR MaLR -302 1349 1116 6925 114 4 10 chr1 75991234 75992209 -166672144 + LTR5 LTR ERVK 1 969 0 3189 179 24 28 chr1 75992209 75992645 -166671708 - MST-int LTR MaLR -535 1116 683 1529 190 3 49 chr1 75992684 75993010 -166671343 + AluJo SINE Alu 1 311 -1 309 295 0 21 chr1 75993159 75993254 -166671099 - MER94 DNA DNA -41 93 1 21 57 0 0 chr1 75993290 75993325 -166671028 + AT_rich Low_complexity Low_complexity 1 35 0 1913 219 34 7 chr1 75994720 75995167 -166669186 + MER65C LTR ERV1 3 461 0 735 193 0 7 chr1 75995312 75995447 -166668906 - FLAM_C SINE Alu -2 141 8 2663 112 0 3 chr1 75995564 75995929 -166668424 + THE1B LTR MaLR 1 364 0 1059 114 0 114 chr1 75996160 75996353 -166668000 - AluSg/x SINE Alu -13 299 129 319 326 93 51 chr1 75996365 75996601 -166667752 - HAL1 LINE L1 -4 2503 2258 347 207 11 0 chr1 75996693 75996780 -166667573 - HAL1 LINE L1 -358 2149 2062 771 155 0 0 chr1 75996834 75996950 -166667403 + FLAM_C SINE Alu 1 116 -27 250 173 27 0 chr1 75997410 75997485 -166666868 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 2028 151 0 3 chr1 75997669 75997961 -166666392 + AluSx SINE Alu 1 291 -21 216 163 0 0 chr1 75998053 75998096 -166666257 + (TA)n Simple_repeat Simple_repeat 1 43 0 566 194 90 1 chr1 75998096 75998312 -166666041 + MER21B LTR ERV1 132 388 -475 180 158 0 0 chr1 75998314 75998352 -166666001 + (TA)n Simple_repeat Simple_repeat 1 38 0 311 294 0 22 chr1 75998357 75998449 -166665904 - L1MC4 LINE L1 -1339 6703 6614 192 200 0 0 chr1 75998449 75998499 -166665854 + (TA)n Simple_repeat Simple_repeat 2 51 0 1039 145 141 17 chr1 75999084 75999318 -166665035 + MER21A LTR ERV1 1 263 -668 2272 140 42 116 chr1 75999323 75999827 -166664526 + MER21A LTR ERV1 377 834 -97 1849 99 22 37 chr1 75999827 76000100 -166664253 + AluSx SINE Alu 36 304 -8 2272 140 42 116 chr1 76000100 76000164 -166664189 + MER21A LTR ERV1 834 902 -29 2265 120 19 0 chr1 76000164 76000530 -166663823 + THE1C LTR MaLR 3 375 0 22 0 0 0 chr1 76000755 76000777 -166663576 + AT_rich Low_complexity Low_complexity 1 22 0 1467 132 0 38 chr1 76000781 76001016 -166663337 + AluJb SINE Alu 87 312 0 667 271 89 25 chr1 76001596 76001749 -166662604 - MIR SINE MIR -31 231 60 2273 98 3 10 chr1 76001749 76002054 -166662299 + AluSp SINE Alu 1 303 -10 667 271 89 25 chr1 76002054 76002103 -166662250 - MIR SINE MIR -202 60 16 27 0 0 0 chr1 76002217 76002244 -166662109 + AT_rich Low_complexity Low_complexity 1 27 0 1762 230 90 59 chr1 76003087 76003487 -166660866 + MLT1E2 LTR MaLR 18 443 -183 2235 119 0 0 chr1 76003487 76003781 -166660572 + AluSq SINE Alu 3 296 -17 1762 230 90 59 chr1 76003781 76003971 -166660382 + MLT1E2 LTR MaLR 443 626 0 297 390 128 14 chr1 76004047 76004329 -166660024 + L2 LINE L2 2959 3272 0 515 327 75 10 chr1 76004552 76004751 -166659602 + MIR SINE MIR 2 213 -49 2353 99 0 10 chr1 76004756 76005070 -166659283 + AluSx SINE Alu 1 311 -1 1529 206 86 8 chr1 76005146 76005530 -166658823 + MLT2D LTR ERVL 1 414 0 551 332 27 42 chr1 76005756 76006030 -166658323 - MLT1K LTR MaLR -66 522 252 2399 69 0 0 chr1 76006030 76006321 -166658032 - AluY SINE Alu -5 306 16 551 332 27 42 chr1 76006321 76006383 -166657970 - MLT1K LTR MaLR -336 252 191 394 263 59 34 chr1 76007273 76007391 -166656962 - MIR SINE MIR -102 160 40 2048 125 0 20 chr1 76007424 76007727 -166656626 + AluSq SINE Alu 1 297 -16 1197 179 50 0 chr1 76007790 76007991 -166656362 + AluJo SINE Alu 87 297 -15 192 152 0 0 chr1 76008023 76008056 -166656297 + GA-rich Low_complexity Low_complexity 2 34 0 258 231 154 39 chr1 76008313 76008443 -166655910 + LTR16A1 LTR ERVL 159 303 -154 291 326 49 54 chr1 76008671 76008855 -166655498 + MIR SINE MIR 23 205 -57 21 0 0 0 chr1 76009028 76009049 -166655304 + AT_rich Low_complexity Low_complexity 1 21 0 1915 136 140 76 chr1 76010426 76010861 -166653492 + MLT2C2 LTR ERVL 1 463 -1 2645 175 36 16 chr1 76010893 76011224 -166653129 + MER89 LTR ERV1 1 349 -210 1896 161 92 58 chr1 76011224 76011659 -166652694 + LTR47A LTR ERVL 3 452 0 2645 175 36 16 chr1 76011659 76011875 -166652478 + MER89 LTR ERV1 349 559 0 832 153 73 7 chr1 76012222 76012372 -166651981 - FRAM SINE Alu -13 163 4 28 29 0 0 chr1 76012525 76012560 -166651793 + AT_rich Low_complexity Low_complexity 1 35 0 2293 74 0 10 chr1 76012673 76012971 -166651382 - AluY SINE Alu -16 295 1 23 0 0 0 chr1 76012972 76012995 -166651358 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr1 76013764 76013793 -166650560 + (CA)n Simple_repeat Simple_repeat 2 30 0 376 294 66 7 chr1 76015024 76015160 -166649193 + MIR SINE MIR 19 162 -100 278 279 0 25 chr1 76015139 76015218 -166649135 - MIR SINE MIR 0 262 186 * 525 336 49 16 chr1 76015360 76015604 -166648749 - MIR SINE MIR -8 254 3 1864 139 12 53 chr1 76016278 76016601 -166647752 - AluSx SINE Alu -2 310 1 379 303 25 8 chr1 76016759 76016881 -166647472 + MIR3 SINE MIR 82 205 -3 2245 112 7 0 chr1 76017583 76017887 -166646466 + AluSx SINE Alu 1 306 -6 333 265 211 7 chr1 76018237 76018384 -166645969 - MER91A DNA MER1_type 0 196 20 440 281 52 7 chr1 76019087 76019240 -166645113 + L2 LINE L2 3150 3309 -4 2485 73 10 0 chr1 76019650 76019951 -166644402 + AluSq SINE Alu 1 304 -9 229 309 128 11 chr1 76020185 76020279 -166644074 + L2 LINE L2 3147 3251 -21 1959 152 3 7 chr1 76021437 76021739 -166642614 - AluJb SINE Alu -11 301 1 2407 84 3 10 chr1 76021791 76022102 -166642251 + AluSq SINE Alu 1 309 -4 194 0 39 0 chr1 76022321 76022347 -166642006 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 76022502 76022523 -166641830 + AT_rich Low_complexity Low_complexity 1 21 0 1079 176 5 5 chr1 76023343 76023542 -166640811 - MER2 DNA MER2_type -3 342 144 889 214 0 0 chr1 76023560 76023719 -166640634 + FRAM SINE Alu 12 170 -6 2001 116 11 21 chr1 76023722 76024035 -166640318 + AluSx SINE Alu 2 311 0 2263 128 21 23 chr1 76024133 76024561 -166639792 - L1MA6 LINE L1 -38 6262 5836 2336 92 0 0 chr1 76024621 76024925 -166639428 + AluSx SINE Alu 1 304 -8 237 299 0 15 chr1 76025062 76025129 -166639224 + MIR3 SINE MIR 137 202 -6 350 331 86 0 chr1 76025245 76025384 -166638969 - MIR SINE MIR -89 173 23 1695 142 109 18 chr1 76026594 76026700 -166637653 + MLT1A1 LTR MaLR 1 96 -269 2995 93 7 14 chr1 76026700 76027131 -166637222 + MSTA LTR MaLR 1 428 0 1695 142 109 18 chr1 76027131 76027355 -166636998 + MLT1A1 LTR MaLR 96 361 -4 2167 68 47 0 chr1 76027694 76027973 -166636380 - AluY SINE Alu -19 292 1 256 218 92 35 chr1 76028541 76028628 -166635725 + MIR SINE MIR 131 222 -40 1661 161 40 43 chr1 76029045 76029344 -166635009 - AluJb SINE Alu -14 298 1 23 54 0 0 chr1 76029523 76029560 -166634793 + AT_rich Low_complexity Low_complexity 1 37 0 2304 107 0 0 chr1 76029724 76030024 -166634329 + AluSg SINE Alu 1 300 -10 660 263 82 26 chr1 76030567 76030799 -166633554 - MIR SINE MIR -13 249 5 22 0 0 0 chr1 76031601 76031623 -166632730 + AT_rich Low_complexity Low_complexity 1 22 0 1692 111 31 160 chr1 76031994 76032341 -166632012 + MER1B DNA MER1_type 1 295 -2415 2228 94 7 3 chr1 76032341 76032639 -166631714 + AluSx SINE Alu 1 299 -13 1692 111 31 160 chr1 76032639 76032678 -166631675 + MER1B DNA MER1_type 295 337 0 976 49 0 0 chr1 76032925 76033048 -166631305 - L1PA4 LINE L1 -5 6150 6028 5463 27 1 0 chr1 76033048 76033714 -166630639 + L1PA4 LINE L1 5393 6059 -96 1709 189 0 0 chr1 76034084 76034393 -166629960 + AluJb SINE Alu 1 309 0 22 0 0 0 chr1 76034875 76034897 -166629456 + AT_rich Low_complexity Low_complexity 1 22 0 2157 137 0 0 chr1 76035049 76035356 -166628997 + AluSx SINE Alu 1 307 -5 1914 128 17 21 chr1 76035641 76035772 -166628581 + AluSx SINE Alu 1 131 -181 2300 86 3 7 chr1 76035772 76036074 -166628279 + AluSg SINE Alu 1 301 -9 1914 128 17 21 chr1 76036074 76036232 -166628121 + AluSx SINE Alu 131 289 -23 738 299 17 13 chr1 76036845 76037076 -166627277 + MIR SINE MIR 31 262 0 1807 157 7 21 chr1 76037218 76037505 -166626848 - AluJo SINE Alu -19 293 11 1050 100 0 0 chr1 76037670 76037810 -166626543 + AluSg/x SINE Alu 155 294 -16 1928 94 65 7 chr1 76038127 76038402 -166625951 - AluSc SINE Alu -18 291 1 2188 99 34 0 chr1 76038602 76038894 -166625459 + AluSx SINE Alu 1 302 -10 2315 87 3 10 chr1 76039070 76039382 -166624971 + AluSg SINE Alu 1 310 0 277 206 76 33 chr1 76039701 76039793 -166624560 + MIR SINE MIR 111 206 -56 573 231 32 70 chr1 76039859 76040011 -166624342 - MIR SINE MIR -82 180 35 2147 114 20 0 chr1 76040011 76040310 -166624043 - AluSq SINE Alu -8 305 1 573 231 32 70 chr1 76040310 76040343 -166624010 - MIR SINE MIR -227 35 2 583 284 72 64 chr1 76040392 76040642 -166623711 + MIR SINE MIR 1 252 -10 31 44 0 0 chr1 76042628 76042673 -166621680 + AT_rich Low_complexity Low_complexity 1 45 0 2218 110 0 3 chr1 76042879 76043180 -166621173 + AluSx SINE Alu 1 300 -12 262 243 60 112 chr1 76043227 76043478 -166620875 + L1ME LINE L1 5547 5784 -337 1980 123 7 0 chr1 76043539 76043815 -166620538 - AluSx SINE Alu -34 278 1 23 0 0 0 chr1 76044520 76044543 -166619810 + AT_rich Low_complexity Low_complexity 1 23 0 1897 144 7 23 chr1 76044747 76045052 -166619301 - AluJb SINE Alu -12 300 1 582 247 20 27 chr1 76045458 76045604 -166618749 + MIR SINE MIR 10 154 -108 1954 120 13 36 chr1 76046596 76046904 -166617449 + AluSq SINE Alu 1 301 -12 203 325 36 12 chr1 76046942 76047025 -166617328 - L2 LINE L2 -212 3060 2976 2029 107 52 0 chr1 76048016 76048306 -166616047 + AluSx SINE Alu 2 306 -6 21 0 0 0 chr1 76050850 76050871 -166613482 + AT_rich Low_complexity Low_complexity 1 21 0 2197 109 3 0 chr1 76051303 76051597 -166612756 - AluSx SINE Alu -17 295 1 463 251 31 49 chr1 76051870 76052033 -166612320 + MER63 DNA MER1_type 1 786 -276 3500 140 40 31 chr1 76052334 76052735 -166611618 + MER39B LTR ERV1 5 416 -237 1950 153 10 23 chr1 76052735 76053036 -166611317 + AluSx SINE Alu 1 297 -15 3500 140 40 31 chr1 76053036 76053277 -166611076 + MER39B LTR ERV1 416 653 0 1749 183 3 3 chr1 76053405 76053700 -166610653 - AluJo SINE Alu -17 295 1 1082 128 0 0 chr1 76053745 76053893 -166610460 + AluSg/x SINE Alu 153 300 -10 21 0 0 0 chr1 76054117 76054138 -166610215 + AT_rich Low_complexity Low_complexity 1 21 0 784 160 0 0 chr1 76054138 76054257 -166610096 - FLAM_C SINE Alu -14 119 1 272 320 92 8 chr1 76054499 76054620 -166609733 - MIR SINE MIR -63 145 20 2283 94 0 7 chr1 76054771 76055068 -166609285 - AluSq SINE Alu -14 299 5 1660 136 36 62 chr1 76055123 76055432 -166608921 - AluJb SINE Alu -9 303 3 244 310 50 10 chr1 76055468 76055568 -166608785 + L2 LINE L2 2642 2745 -569 186 150 125 0 chr1 76055672 76055712 -166608641 - L2 LINE L2 -4 3309 3265 459 380 69 50 chr1 76055895 76056316 -166608037 + L2 LINE L2 2844 3272 0 2326 83 7 3 chr1 76056648 76056948 -166607405 + AluSx SINE Alu 1 301 -11 1554 181 10 17 chr1 76057145 76057433 -166606920 + AluJo SINE Alu 5 290 -22 21 0 0 0 chr1 76057773 76057794 -166606559 + AT_rich Low_complexity Low_complexity 1 21 0 206 329 92 0 chr1 76057896 76057972 -166606381 - L2 LINE L2 -81 3191 3109 2068 112 0 20 chr1 76057976 76058270 -166606083 - AluSg SINE Alu -22 288 1 1185 244 64 74 chr1 76058378 76058552 -166605801 + L2 LINE L2 2599 2773 -540 2424 68 0 6 chr1 76058552 76058863 -166605490 - AluY SINE Alu -2 309 1 1185 244 64 74 chr1 76058863 76059157 -166605196 + L2 LINE L2 2773 3068 -245 1560 210 3 10 chr1 76059157 76059452 -166604901 - AluJb SINE Alu -19 293 1 1185 244 64 74 chr1 76059452 76059696 -166604657 + L2 LINE L2 3068 3313 0 273 295 139 8 chr1 76059750 76059879 -166604474 - L2 LINE L2 0 3313 3168 2080 120 0 3 chr1 76060081 76060373 -166603980 + AluSq SINE Alu 20 310 -3 367 269 10 71 chr1 76060373 76060477 -166603876 + MIR SINE MIR 17 114 -103 1587 189 7 14 chr1 76060613 76060898 -166603455 + AluJo SINE Alu 11 293 -19 2068 134 7 0 chr1 76061017 76061316 -166603037 + AluSx SINE Alu 3 303 -9 2137 125 10 0 chr1 76061794 76062090 -166602263 - AluSx SINE Alu -13 299 1 461 159 45 0 chr1 76062255 76062343 -166602010 + MIR SINE MIR 170 261 -1 210 283 19 0 chr1 76062468 76062521 -166601832 - L2 LINE L2 -10 3303 3250 260 330 70 92 chr1 76062649 76062976 -166601377 + L2 LINE L2 2336 2655 -659 278 356 62 25 chr1 76063395 76063555 -166600798 + L2 LINE L2 3102 3267 -5 519 210 12 12 chr1 76063566 76063728 -166600625 + GA-rich Low_complexity Low_complexity 3 164 0 1096 205 15 0 chr1 76063836 76064041 -166600312 - MER3 DNA MER1_type 0 209 2 1030 286 87 39 chr1 76064216 76064677 -166599676 + L1MEc LINE L1 36 518 -5878 1034 134 0 0 chr1 76064774 76064923 -166599430 - MLT1A1 LTR MaLR -7 358 210 2243 108 0 3 chr1 76064940 76065236 -166599117 + AluSg SINE Alu 1 295 -15 24 0 0 0 chr1 76065465 76065489 -166598864 + AT_rich Low_complexity Low_complexity 1 24 0 456 330 22 27 chr1 76065756 76065941 -166598412 - MIR SINE MIR -71 191 8 771 174 10 56 chr1 76066601 76066612 -166597741 + L1MB8 LINE L1 5983 5993 -185 1630 194 55 27 chr1 76066612 76066977 -166597376 + THE1C LTR MaLR 1 375 0 771 174 10 56 chr1 76066977 76067044 -166597309 + L1MB8 LINE L1 5993 6062 -116 2147 133 0 0 chr1 76067044 76067338 -166597015 + AluSq SINE Alu 1 294 -19 771 174 10 56 chr1 76067338 76067453 -166596900 + L1MB8 LINE L1 6062 6168 -10 260 231 157 46 chr1 76067705 76067813 -166596540 - MIR SINE MIR -6 256 137 1819 168 7 13 chr1 76067856 76068165 -166596188 - AluSx SINE Alu 0 312 6 358 338 50 7 chr1 76068170 76068309 -166596044 - MIR SINE MIR -113 149 5 385 243 282 6 chr1 76069366 76069547 -166594806 + MIR SINE MIR 23 253 -9 2132 120 7 7 chr1 76070592 76070901 -166593452 - AluSx SINE Alu -3 309 1 248 250 0 0 chr1 76071054 76071110 -166593243 - MIR SINE MIR -16 246 191 307 179 14 150 chr1 76071241 76071288 -166593065 - MER4B LTR ERV1 -489 121 69 1454 199 0 23 chr1 76071288 76071595 -166592758 - AluSq SINE Alu -9 304 5 307 179 14 150 chr1 76071595 76071687 -166592666 - MER4B LTR ERV1 -541 69 1 346 109 0 163 chr1 76071692 76071727 -166592626 + MER53 DNA DNA 35 48 -141 2473 73 0 3 chr1 76071727 76072029 -166592324 - AluY SINE Alu -10 301 1 346 109 0 163 chr1 76072029 76072085 -166592268 + MER53 DNA DNA 48 111 -78 545 147 42 0 chr1 76072115 76072210 -166592143 - MER53 DNA DNA -90 99 1 2339 132 54 79 chr1 76072326 76072688 -166591665 + MER4E LTR ERV1 1 371 -395 2030 112 14 0 chr1 76072688 76072994 -166591359 + AluSx SINE Alu 1 310 0 2339 132 54 79 chr1 76072994 76073232 -166591121 + MER4E LTR ERV1 371 756 -10 2525 86 83 6 chr1 76073333 76073683 -166590670 - MER51B LTR ERV1 0 377 1 2003 105 3 51 chr1 76073795 76074109 -166590244 - AluSx SINE Alu -9 303 5 1569 137 68 0 chr1 76074265 76074514 -166589839 - AluSx SINE Alu -17 295 30 2347 93 0 0 chr1 76075706 76076007 -166588346 - AluSx SINE Alu -11 301 1 352 284 119 47 chr1 76076523 76076759 -166587594 + MLT1K LTR MaLR 336 588 0 1773 189 26 28 chr1 76077182 76077606 -166586747 - Charlie4a DNA MER1_type -1 507 85 183 42 0 0 chr1 76077689 76077713 -166586640 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1935 122 18 14 chr1 76077713 76077992 -166586361 - AluSx SINE Alu -32 280 1 833 165 0 0 chr1 76078194 76078321 -166586032 + FLAM_C SINE Alu 1 127 -16 1585 154 71 7 chr1 76078337 76078617 -166585736 + AluJb SINE Alu 1 298 -14 2273 114 0 3 chr1 76078625 76078933 -166585420 + AluSq SINE Alu 6 312 -1 225 0 0 0 chr1 76078939 76078964 -166585389 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1509 205 0 8 chr1 76078979 76079247 -166585106 - AluJo SINE Alu -46 266 1 282 290 97 77 chr1 76079459 76079759 -166584594 + L2 LINE L2 2110 2415 -899 2362 99 3 6 chr1 76079838 76080150 -166584203 - AluSq SINE Alu -2 311 1 2246 90 7 0 chr1 76080225 76080514 -166583839 - AluSg SINE Alu -19 291 1 215 339 16 0 chr1 76080520 76080582 -166583771 + L2 LINE L2 2779 2841 -473 235 203 87 43 chr1 76080673 76080742 -166583611 + MIR SINE MIR 190 261 -1 2227 90 23 0 chr1 76081018 76081317 -166583036 + AluSx SINE Alu 1 306 -6 222 232 0 36 chr1 76081839 76081895 -166582458 + L2 LINE L2 3215 3268 -4 2447 62 0 3 chr1 76084599 76084905 -166579448 - AluY SINE Alu -6 305 1 2120 117 4 0 chr1 76085411 76085725 -166578628 + AluSx SINE Alu 1 315 0 325 284 41 53 chr1 76085913 76085979 -166578374 - MIR SINE MIR -32 230 165 1633 158 0 0 chr1 76085979 76086226 -166578127 - AluSx SINE Alu -60 252 6 325 284 41 53 chr1 76086226 76086328 -166578025 - MIR SINE MIR -97 165 64 22 0 0 0 chr1 76086464 76086486 -166577867 + AT_rich Low_complexity Low_complexity 1 22 0 210 258 290 0 chr1 76086617 76086710 -166577643 - L3 LINE CR1 -293 1284 1165 189 293 0 0 chr1 76086709 76086750 -166577603 + MIR SINE MIR 201 241 -21 * 436 299 160 46 chr1 76086806 76086954 -166577399 - L3 LINE CR1 -458 1119 989 2051 126 3 26 chr1 76086954 76087256 -166577097 - AluSx SINE Alu -17 295 1 436 299 160 46 chr1 76087256 76087562 -166576791 - L3 LINE CR1 -588 989 613 778 286 95 14 chr1 76087977 76088271 -166576082 - HsTC2 DNA Tc2 -1095 803 486 2102 91 45 14 chr1 76088540 76088826 -166575527 + AluSp SINE Alu 1 295 -18 234 313 80 55 chr1 76089267 76089430 -166574923 + 7SK RNA RNA 1 167 -26 2649 39 0 3 chr1 76089992 76090300 -166574053 - AluY SINE Alu -4 307 1 212 136 159 0 chr1 76090300 76090344 -166574009 - L2 LINE L2 -591 2723 2673 1254 219 55 47 chr1 76090595 76090938 -166573415 + Charlie1a DNA MER1_type 53 398 -1057 945 121 0 14 chr1 76090978 76091118 -166573235 + FLAM_C SINE Alu 1 138 -5 3568 179 119 40 chr1 76091153 76091667 -166572686 + Charlie1a DNA MER1_type 437 909 -1852 2331 88 3 0 chr1 76091667 76091962 -166572391 - AluSp SINE Alu -17 296 1 3568 179 119 40 chr1 76091962 76092391 -166571962 + Charlie1a DNA MER1_type 909 1454 -1 275 360 84 17 chr1 76092433 76092611 -166571742 + MIR SINE MIR 70 259 -3 1385 178 13 65 chr1 76092635 76092796 -166571557 - AluJb SINE Alu -19 293 154 2199 114 7 0 chr1 76092796 76093094 -166571259 - AluSx SINE Alu -12 300 1 1385 178 13 65 chr1 76093094 76093241 -166571112 - AluJb SINE Alu -158 154 1 1722 136 68 18 chr1 76093272 76093551 -166570802 + AluSx SINE Alu 1 293 -19 342 61 0 0 chr1 76094337 76094386 -166569967 + (TG)n Simple_repeat Simple_repeat 2 50 0 2167 100 4 0 chr1 76094573 76094852 -166569501 - AluSg SINE Alu -30 280 1 724 295 168 23 chr1 76094867 76095308 -166569045 + L2 LINE L2 2230 2734 -580 1474 265 77 41 chr1 76095313 76095448 -166568905 + L1MCa LINE L1 2240 2369 -4057 2216 107 16 7 chr1 76095448 76095756 -166568597 + AluSx SINE Alu 1 311 -1 1474 265 77 41 chr1 76095756 76095994 -166568359 + L1MCa LINE L1 2369 2597 -3829 2167 87 3 14 chr1 76095994 76096283 -166568070 - AluSg SINE Alu -24 286 1 1474 265 77 41 chr1 76096283 76096746 -166567607 + L1MCa LINE L1 2597 3099 -3327 367 233 183 20 chr1 76096860 76096964 -166567389 + L1MCa LINE L1 3382 3468 -2958 1767 176 11 11 chr1 76096964 76097301 -166567052 + AluJb SINE Alu 1 337 0 367 233 183 20 chr1 76097301 76097495 -166566858 + L1MCa LINE L1 3468 3730 -2696 2275 109 0 3 chr1 76097495 76097798 -166566555 + AluSq SINE Alu 1 302 -11 1661 174 41 0 chr1 76097880 76098174 -166566179 - AluSx SINE Alu -6 306 1 2135 92 7 0 chr1 76098414 76098695 -166565658 + AluSx SINE Alu 1 283 -29 2243 90 3 0 chr1 76098997 76099296 -166565057 - AluSp SINE Alu -13 300 1 2100 103 7 3 chr1 76099501 76099814 -166564539 - AluSq SINE Alu 0 314 1 324 0 0 0 chr1 76099931 76099967 -166564386 + (TG)n Simple_repeat Simple_repeat 2 37 0 31 0 0 0 chr1 76100578 76100609 -166563744 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr1 76100983 76101013 -166563340 + AT_rich Low_complexity Low_complexity 1 30 0 37 76 0 0 chr1 76101348 76101427 -166562926 + AT_rich Low_complexity Low_complexity 1 79 0 2252 104 0 3 chr1 76101687 76101985 -166562368 - AluSg SINE Alu -9 301 5 2034 119 65 0 chr1 76102177 76102471 -166561882 - AluSp SINE Alu 0 313 1 1186 179 0 9 chr1 76102471 76102683 -166561670 - AluJo SINE Alu -16 296 87 1723 190 0 7 chr1 76102777 76103072 -166561281 - AluJo SINE Alu -19 293 1 21 36 0 0 chr1 76103072 76103100 -166561253 + AT_rich Low_complexity Low_complexity 1 28 0 595 287 129 10 chr1 76103817 76104026 -166560327 - MIR SINE MIR -3 259 26 287 321 12 0 chr1 76104136 76104220 -166560133 - MER117 DNA MER1_type -112 85 1 2032 138 3 0 chr1 76104348 76104644 -166559709 + AluSx SINE Alu 1 297 -15 437 248 12 56 chr1 76104752 76104913 -166559440 + MER103 DNA DNA 3 156 -10 1639 115 108 14 chr1 76105271 76105550 -166558803 - AluSx SINE Alu -7 305 1 1318 126 0 0 chr1 76105661 76105835 -166558518 - AluSx SINE Alu -138 174 1 1956 115 75 23 chr1 76106229 76106576 -166557777 - LTR7 LTR ERV1 -85 365 1 3880 102 5 12 chr1 76106576 76107137 -166557216 - HERVH LTR ERV1 0 7713 7157 2407 165 9 0 chr1 76107130 76107549 -166556804 - HERVH LTR ERV1 -1697 6016 5594 * 1613 143 4 8 chr1 76107546 76107797 -166556556 - HERVH LTR ERV1 -2564 5149 4900 * 5937 146 19 14 chr1 76107801 76109366 -166554987 - HERVH LTR ERV1 -1956 4698 3141 5277 118 0 30 chr1 76109346 76110203 -166554150 - HERVH LTR ERV1 -4718 2995 2165 * 1925 164 3 3 chr1 76110709 76111021 -166553332 + AluSx SINE Alu 1 312 0 807 205 50 10 chr1 76111364 76111564 -166552789 + MER3 DNA MER1_type 1 208 -1 183 351 39 13 chr1 76111604 76111681 -166552672 + MIR SINE MIR 5 83 -179 2198 117 7 7 chr1 76111700 76112009 -166552344 + AluSq SINE Alu 1 309 -4 198 0 0 0 chr1 76112048 76112070 -166552283 + (TTG)n Simple_repeat Simple_repeat 2 23 0 623 148 141 15 chr1 76112111 76112246 -166552107 + MER5C DNA MER1_type 2 153 -171 2164 116 3 10 chr1 76112256 76112559 -166551794 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr1 76112677 76112698 -166551655 + AT_rich Low_complexity Low_complexity 1 21 0 2150 118 0 13 chr1 76112704 76113008 -166551345 + AluSq SINE Alu 1 300 -13 1777 130 20 13 chr1 76113179 76113479 -166550874 + AluSx SINE Alu 1 302 -10 2038 119 33 3 chr1 76113479 76113782 -166550571 + AluSx SINE Alu 1 312 0 2191 109 3 0 chr1 76113850 76114152 -166550201 + AluSx SINE Alu 1 303 -9 185 211 19 0 chr1 76114236 76114288 -166550065 + CT-rich Low_complexity Low_complexity 5 57 0 316 364 51 0 chr1 76115726 76115844 -166548509 - L2 LINE L2 -12 3260 3137 2356 96 0 3 chr1 76115906 76116218 -166548135 + AluSq SINE Alu 1 311 -2 2120 129 0 19 chr1 76116501 76116819 -166547534 - AluSx SINE Alu 0 312 1 2166 102 7 0 chr1 76116991 76117284 -166547069 - AluSg SINE Alu -15 295 1 2214 113 27 0 chr1 76117545 76117846 -166546507 - AluSg SINE Alu -1 309 1 1990 128 10 0 chr1 76118420 76118709 -166545644 - AluSx SINE Alu -15 297 6 29 0 0 0 chr1 76118872 76118901 -166545452 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr1 76118975 76119015 -166545338 + AT_rich Low_complexity Low_complexity 1 40 0 1704 138 72 3 chr1 76119022 76119312 -166545041 - AluSx SINE Alu -2 310 1 1651 256 72 89 chr1 76119318 76120324 -166544029 - L1MC4 LINE L1 -132 7910 6923 201 311 147 26 chr1 76120615 76120805 -166543548 + L2 LINE L2 3099 3311 -2 2502 77 3 0 chr1 76120833 76121144 -166543209 - AluSp SINE Alu 0 313 2 2220 96 0 16 chr1 76121184 76121498 -166542855 - AluSc SINE Alu 0 309 1 22 35 0 0 chr1 76122056 76122085 -166542268 + AT_rich Low_complexity Low_complexity 1 29 0 2319 80 3 7 chr1 76123069 76123369 -166540984 + AluSq SINE Alu 1 299 -14 2161 108 0 14 chr1 76123437 76123732 -166540621 - AluSg SINE Alu -19 291 1 2094 121 3 3 chr1 76124087 76124384 -166539969 - AluSp SINE Alu -16 297 1 25 0 0 0 chr1 76124837 76124862 -166539491 + AT_rich Low_complexity Low_complexity 1 25 0 1479 97 66 0 chr1 76124866 76125062 -166539291 - AluSq SINE Alu -104 209 1 1405 172 77 0 chr1 76126043 76126304 -166538049 + AluJo SINE Alu 19 299 -13 280 188 94 16 chr1 76126363 76126460 -166537893 - L1ME4a LINE L1 -2 6119 6008 1712 169 3 23 chr1 76126460 76126762 -166537591 + AluJb SINE Alu 1 296 -16 280 188 94 16 chr1 76126762 76126792 -166537561 - L1ME4a LINE L1 -113 6008 5982 233 400 70 5 chr1 76126803 76126988 -166537365 + L2 LINE L2 2712 2908 -406 2296 95 0 3 chr1 76127472 76127767 -166536586 - AluSq SINE Alu -15 298 5 2443 86 0 0 chr1 76128114 76128418 -166535935 + AluSc SINE Alu 1 304 -5 201 328 33 0 chr1 76129791 76129852 -166534501 - MIR SINE MIR -171 91 29 1616 167 18 18 chr1 76130413 76130688 -166533665 - AluJo SINE Alu -33 279 5 344 274 0 98 chr1 76130695 76130829 -166533524 - MIR SINE MIR -78 130 32 282 292 11 11 chr1 76131369 76131458 -166532895 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 25 31 0 0 chr1 76131488 76131520 -166532833 + AT_rich Low_complexity Low_complexity 1 32 0 1044 117 0 7 chr1 76131991 76132136 -166532217 - AluSq/x SINE Alu -168 144 1 2108 120 0 20 chr1 76132568 76132868 -166531485 + AluSx SINE Alu 1 294 -18 29 28 0 0 chr1 76133038 76133074 -166531279 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 76133145 76133168 -166531185 + AT_rich Low_complexity Low_complexity 1 23 0 1995 144 7 3 chr1 76133548 76133846 -166530507 - AluJo SINE Alu -13 299 1 285 61 0 82 chr1 76134410 76134459 -166529894 - Alu SINE Alu -4 298 254 199 314 71 0 chr1 76134508 76134578 -166529775 + MIR3 SINE MIR 133 207 -1 1710 143 64 7 chr1 76135600 76135880 -166528473 - AluSx SINE Alu -12 300 5 28 61 0 0 chr1 76136421 76136470 -166527883 + AT_rich Low_complexity Low_complexity 1 49 0 209 211 96 0 chr1 76137078 76137130 -166527223 + MIR SINE MIR 110 166 -96 2224 48 35 28 chr1 76137344 76137659 -166526694 - AluY SINE Alu 0 317 1 1654 118 26 97 chr1 76137723 76138062 -166526291 + AluYb8 SINE Alu 1 315 -3 2457 59 0 7 chr1 76138337 76138641 -166525712 - AluY SINE Alu -9 302 1 796 163 0 8 chr1 76138801 76138930 -166525423 + FLAM_C SINE Alu 1 128 -5 1616 172 22 35 chr1 76139116 76139430 -166524923 - AluJo SINE Alu -2 310 1 27 0 0 0 chr1 76139634 76139661 -166524692 + AT_rich Low_complexity Low_complexity 1 27 0 186 43 0 0 chr1 76139661 76139684 -166524669 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 940 156 0 0 chr1 76139701 76139842 -166524511 - AluJo SINE Alu -171 141 1 254 245 168 58 chr1 76140260 76140415 -166523938 - MIR SINE MIR -89 173 2 25 0 0 0 chr1 76140649 76140674 -166523679 + AT_rich Low_complexity Low_complexity 1 25 0 185 193 0 18 chr1 76141541 76141598 -166522755 + (TA)n Simple_repeat Simple_repeat 1 56 0 236 333 98 32 chr1 76141654 76141777 -166522576 - MIR3 SINE MIR -20 188 58 754 162 7 52 chr1 76141953 76142119 -166522234 - FLAM_C SINE Alu 0 161 2 1527 201 20 37 chr1 76142398 76142697 -166521656 + AluJb SINE Alu 1 294 -18 1274 168 0 5 chr1 76142842 76143038 -166521315 + AluJb SINE Alu 86 280 -32 2532 58 0 6 chr1 76144344 76144657 -166519696 - AluY SINE Alu 0 311 1 796 163 0 8 chr1 76144817 76144946 -166519407 + FLAM_C SINE Alu 1 128 -5 1616 172 22 35 chr1 76145132 76145446 -166518907 - AluJo SINE Alu -2 310 1 27 0 0 0 chr1 76145650 76145677 -166518676 + AT_rich Low_complexity Low_complexity 1 27 0 186 43 0 0 chr1 76145677 76145700 -166518653 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 940 156 0 0 chr1 76145717 76145858 -166518495 - AluJo SINE Alu -171 141 1 254 245 168 58 chr1 76146276 76146431 -166517922 - MIR SINE MIR -89 173 2 25 0 0 0 chr1 76146665 76146690 -166517663 + AT_rich Low_complexity Low_complexity 1 25 0 185 193 0 18 chr1 76147557 76147614 -166516739 + (TA)n Simple_repeat Simple_repeat 1 56 0 236 333 98 32 chr1 76147670 76147793 -166516560 - MIR3 SINE MIR -20 188 58 754 162 7 52 chr1 76147969 76148135 -166516218 - FLAM_C SINE Alu 0 161 2 2145 105 41 0 chr1 76148403 76148698 -166515655 + AluSx SINE Alu 1 307 -5 2030 134 3 0 chr1 76149315 76149642 -166514711 - AluSx SINE Alu 0 328 1 278 229 62 56 chr1 76149643 76149787 -166514566 - MER104 DNA Tc2 -35 145 1 682 135 40 0 chr1 76149827 76149953 -166514400 + AluSp SINE Alu 1 131 -182 295 256 51 39 chr1 76150104 76150260 -166514093 - L1ME4a LINE L1 0 6104 5947 642 271 67 20 chr1 76151113 76151635 -166512718 - L1ME4a LINE L1 -735 5412 4864 867 300 94 32 chr1 76151781 76152125 -166512228 - L1ME4a LINE L1 -1472 4657 4336 2846 143 2 4 chr1 76152125 76152581 -166511772 - L1PA15 LINE L1 -2 6163 5709 867 300 94 32 chr1 76152581 76153056 -166511297 - L1ME4a LINE L1 -1793 4336 3787 330 220 9 46 chr1 76153180 76153289 -166511064 - L1ME4a LINE L1 -4893 1226 1122 26 0 0 0 chr1 76153333 76153359 -166510994 + AT_rich Low_complexity Low_complexity 1 26 0 342 91 0 0 chr1 76154560 76154615 -166509738 + (TA)n Simple_repeat Simple_repeat 2 56 0 569 235 271 10 chr1 76154705 76155123 -166509230 - LTR50 LTR ERVL 0 795 93 1022 280 59 75 chr1 76156480 76157117 -166507236 - L2 LINE L2 -179 3134 2511 1225 171 143 68 chr1 76157123 76157550 -166506803 - MER69 DNA AcHobo -20 2506 2048 1361 271 11 16 chr1 76157551 76157920 -166506433 - MER69 DNA AcHobo -1984 542 176 2292 183 95 7 chr1 76157972 76158436 -166505917 - MLT1D LTR MaLR 0 505 1 1449 113 40 9 chr1 76158436 76158656 -166505697 - MER30 DNA MER1_type 0 230 2 2475 173 46 14 chr1 76158667 76159171 -166505182 + L1MB7 LINE L1 5646 6165 -19 746 191 14 14 chr1 76159189 76159336 -166505017 - MER69 DNA AcHobo -2378 148 2 445 295 18 0 chr1 76159336 76159448 -166504905 - L2 LINE L2 -787 2527 2414 8002 175 27 18 chr1 76159499 76159514 -166504839 - L1MB1 LINE L1 0 7587 7574 351 0 0 0 chr1 76159514 76159553 -166504800 + (CA)n Simple_repeat Simple_repeat 2 40 0 8002 175 27 18 chr1 76159553 76161894 -166502459 - L1MB1 LINE L1 -13 7574 5216 1573 242 36 77 chr1 76161897 76162352 -166502001 - L1MB1 LINE L1 -3435 4130 3658 1876 129 0 0 chr1 76162360 76162623 -166501730 + AluSx SINE Alu 1 263 -49 337 169 17 0 chr1 76162623 76162721 -166501632 + AluJ/FRAM SINE Alu 230 331 0 1573 242 36 77 chr1 76162721 76163258 -166501095 - L1MB1 LINE L1 -3907 3658 3108 2433 191 25 51 chr1 76163258 76163822 -166500531 - MER44D DNA MER2_type 0 605 2 1573 242 36 77 chr1 76163822 76163984 -166500369 - L1MB1 LINE L1 -4457 3108 2941 1408 192 58 4 chr1 76164858 76165134 -166499219 + AluSx SINE Alu 1 291 -21 436 274 120 14 chr1 76165186 76165394 -166498959 - L1MC/D LINE L1 -2035 5773 5544 222 37 0 0 chr1 76165793 76165820 -166498533 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 222 276 81 138 chr1 76166449 76166566 -166497787 - L2 LINE L2 -903 2411 2289 5792 97 31 5 chr1 76166566 76167506 -166496847 + L1PA14 LINE L1 5191 6157 -4 222 276 81 138 chr1 76167506 76167671 -166496682 - L2 LINE L2 -1025 2289 2145 258 353 8 50 chr1 76167769 76167888 -166496465 + L2 LINE L2 3188 3301 -12 305 299 54 48 chr1 76168438 76168605 -166495748 - L2 LINE L2 -6 3307 3140 226 344 24 93 chr1 76168637 76168972 -166495381 + L2 LINE L2 2790 3092 -180 340 314 39 39 chr1 76169342 76169495 -166494858 + MER5A DNA MER1_type 31 183 -6 363 264 136 21 chr1 76170583 76170723 -166493630 + L2 LINE L2 3154 3309 -4 * 625 346 70 45 chr1 76170699 76171011 -166493342 - L2 LINE L2 -10 3262 2943 21 36 0 0 chr1 76172316 76172344 -166492009 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 76172644 76172680 -166491673 + AT_rich Low_complexity Low_complexity 1 36 0 206 188 0 83 chr1 76172680 76172728 -166491625 - L2 LINE L2 -3 3310 3267 21 36 0 0 chr1 76173603 76173631 -166490722 + AT_rich Low_complexity Low_complexity 1 28 0 492 329 99 20 chr1 76173887 76174230 -166490123 - L2 LINE L2 -1400 1914 1545 753 233 101 2 chr1 76174275 76174529 -166489824 - MER69 DNA AcHobo -891 335 4 885 332 112 10 chr1 76174532 76175131 -166489222 - L2 LINE L2 -1894 1420 761 4523 167 15 9 chr1 76175363 76176242 -166488111 - L1PA12 LINE L1 -2302 3844 2961 9081 138 22 6 chr1 76176242 76178570 -166485783 + L1PA12 LINE L1 3836 6168 0 2177 105 0 10 chr1 76178591 76178904 -166485449 + AluSg SINE Alu 1 310 0 337 206 227 0 chr1 76179412 76179509 -166484844 + L2 LINE L2 3190 3308 -5 276 289 79 0 chr1 76179697 76179773 -166484580 + MIR SINE MIR 70 151 -111 677 242 117 22 chr1 76179790 76180013 -166484340 - MIR SINE MIR -17 245 2 253 284 125 0 chr1 76180028 76180116 -166484237 + MIR SINE MIR 156 254 -8 783 308 70 78 chr1 76180164 76180936 -166483417 - L3 LINE CR1 -122 1455 690 30 0 0 0 chr1 76181119 76181149 -166483204 + AT_rich Low_complexity Low_complexity 1 30 0 34 0 0 0 chr1 76181172 76181206 -166483147 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 76181818 76181839 -166482514 + AT_rich Low_complexity Low_complexity 1 21 0 3876 195 130 3 chr1 76182129 76183059 -166481294 + L1PB1 LINE L1 106 1153 -5710 15189 197 17 8 chr1 76183067 76184375 -166479978 + L1PB1 LINE L1 1311 2605 -4262 2414 87 0 0 chr1 76184375 76184686 -166479667 - AluY SINE Alu 0 311 1 15189 197 17 8 chr1 76184686 76188484 -166475869 + L1PB1 LINE L1 2605 6511 -356 425 43 14 80 chr1 76188494 76188632 -166475721 + (TA)n Simple_repeat Simple_repeat 2 130 0 2524 100 5 5 chr1 76188642 76189011 -166475342 + L1PB1 LINE L1 6498 6866 -1 25 0 0 0 chr1 76189011 76189036 -166475317 + AT_rich Low_complexity Low_complexity 1 25 0 1839 119 35 0 chr1 76189193 76189454 -166474899 - AluSx SINE Alu -42 270 1 413 306 124 12 chr1 76189806 76190064 -166474289 - L1ME LINE L1 -350 5771 5485 619 338 124 44 chr1 76191231 76191689 -166472664 + L2 LINE L2 1366 1786 -1528 3123 95 30 2 chr1 76191689 76192130 -166472223 - MLT2A2 LTR ERVL 0 453 1 619 338 124 44 chr1 76192130 76192798 -166471555 + L2 LINE L2 1786 2582 -732 214 289 183 48 chr1 76192953 76193057 -166471296 + L2 LINE L2 3155 3272 0 327 281 34 48 chr1 76193161 76193307 -166471046 + MLT1I LTR MaLR 67 210 -199 345 236 87 55 chr1 76193347 76193474 -166470879 + MLT1I LTR MaLR 277 407 -2 1674 88 66 0 chr1 76193622 76193849 -166470504 + AluSx SINE Alu 39 280 -32 381 93 0 0 chr1 76193857 76193911 -166470442 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 180 77 0 0 chr1 76194501 76194527 -166469826 + (A)n Simple_repeat Simple_repeat 1 26 0 317 328 16 74 chr1 76194719 76194908 -166469445 - MLT1K LTR MaLR -358 230 53 565 53 13 0 chr1 76195376 76195452 -166468901 - MADE1 DNA Mariner 0 80 4 230 314 57 57 chr1 76195516 76195640 -166468713 - L2 LINE L2 -12 3260 3137 24 0 0 0 chr1 76197352 76197376 -166466977 + AT_rich Low_complexity Low_complexity 1 24 0 782 269 82 0 chr1 76197379 76197587 -166466766 - MIR SINE MIR -21 241 17 1134 263 88 32 chr1 76199047 76199423 -166464930 + LTR16A LTR ERVL 54 450 0 445 184 0 101 chr1 76199463 76199502 -166464851 - MER5A DNA MER1_type -83 106 65 2231 90 3 0 chr1 76199502 76199791 -166464562 - AluSg SINE Alu -19 291 2 445 184 0 101 chr1 76199791 76199860 -166464493 - MER5A DNA MER1_type -124 65 9 187 244 0 0 chr1 76199877 76199918 -166464435 + MIR SINE MIR 183 223 -39 199 331 63 8 chr1 76200468 76200595 -166463758 + L2 LINE L2 2831 2964 -308 212 395 12 0 chr1 76200796 76200882 -166463471 + L2 LINE L2 3185 3271 -1 3189 155 67 11 chr1 76201052 76201705 -166462648 - L1MB7 LINE L1 -9 6175 5486 2104 105 3 13 chr1 76202530 76202834 -166461519 + AluSg SINE Alu 1 301 -9 231 373 29 35 chr1 76203423 76203596 -166460757 - MER5A DNA MER1_type -6 183 1 277 313 0 0 chr1 76203759 76203839 -166460514 + L2 LINE L2 3229 3308 -5 735 208 0 0 chr1 76203858 76203983 -166460370 + FLAM_A SINE Alu 2 126 -7 321 142 0 11 chr1 76204778 76204841 -166459512 + L1MA8 LINE L1 5998 6056 -235 * 486 174 53 53 chr1 76204837 76204969 -166459384 + L1MA7 LINE L1 6159 6290 -1 252 296 56 0 chr1 76205081 76205189 -166459164 + L1MEd LINE L1 995 1108 -5011 401 319 67 28 chr1 76205243 76205632 -166458721 + HAL1 LINE L1 1236 1639 -868 21 0 0 0 chr1 76206004 76206025 -166458328 + AT_rich Low_complexity Low_complexity 1 21 0 1216 198 0 4 chr1 76206515 76206742 -166457611 + AluJo SINE Alu 75 300 -12 658 245 33 13 chr1 76207573 76207724 -166456629 + MIR SINE MIR 16 169 -93 186 71 0 0 chr1 76209097 76209125 -166455228 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 76210334 76210355 -166453998 + AT_rich Low_complexity Low_complexity 1 21 0 442 122 19 93 chr1 76210959 76211066 -166453287 - L1PA11 LINE L1 0 6174 6076 15777 30 3 1 chr1 76210974 76213634 -166450719 - L1PA3 LINE L1 -4 6151 3486 602 207 7 21 chr1 76213689 76213834 -166450519 - L1MA10 LINE L1 0 6334 6192 371 297 301 10 chr1 76214947 76215365 -166448988 + L3 LINE CR1 680 1219 -358 1758 164 40 0 chr1 76215799 76216097 -166448256 + MER7A DNA MER2_type 39 346 0 604 301 21 11 chr1 76216120 76216306 -166448047 + L2 LINE L2 2843 3030 -283 379 261 147 45 chr1 76216294 76216451 -166447902 - MER5A DNA MER1_type -7 182 10 * 275 302 57 63 chr1 76217366 76217525 -166446828 - MIR SINE MIR 0 262 105 213 341 150 42 chr1 76217769 76217936 -166446417 + MIR3 SINE MIR 6 190 -18 214 191 0 43 chr1 76217883 76217930 -166446423 - MIR SINE MIR -85 123 79 231 173 40 67 chr1 76218056 76218131 -166446222 + L2 LINE L2 3155 3227 -86 513 260 24 0 chr1 76218192 76218315 -166446038 + MIR SINE MIR 31 156 -106 1571 186 25 74 chr1 76218523 76218916 -166445437 - MLT1A2 LTR MaLR 0 374 1 427 259 154 55 chr1 76219997 76220198 -166444155 - MIR SINE MIR -9 253 33 348 236 0 0 chr1 76220272 76220382 -166443971 + CT-rich Low_complexity Low_complexity 1 110 0 307 289 156 15 chr1 76220682 76220817 -166443536 - MIR SINE MIR -73 189 36 21 0 0 0 chr1 76220888 76220909 -166443444 + AT_rich Low_complexity Low_complexity 1 21 0 501 235 174 0 chr1 76221311 76221460 -166442893 + MER5A DNA MER1_type 15 189 0 250 200 0 36 chr1 76221848 76221903 -166442450 - Tigger6 DNA MER2_type 0 1597 1545 1138 94 0 0 chr1 76221905 76222065 -166442288 + AluSg/x SINE Alu 150 309 -3 3701 238 32 5 chr1 76222075 76222887 -166441466 - MER21B LTR ERV1 -18 845 12 3079 171 31 15 chr1 76222912 76223528 -166440825 - Tigger6 DNA MER2_type -29 1568 943 2931 90 35 11 chr1 76223544 76223978 -166440375 - MLT2A1 LTR ERVL 0 444 1 411 304 15 20 chr1 76224110 76224305 -166440048 - Tigger3(Golem) DNA MER2_type -1668 1361 1227 1391 214 86 0 chr1 76224333 76224636 -166439717 - Tigger6 DNA MER2_type -1267 330 2 21 0 0 0 chr1 76224759 76224780 -166439573 + AT_rich Low_complexity Low_complexity 1 21 0 264 122 0 0 chr1 76224897 76224938 -166439415 + (T)n Simple_repeat Simple_repeat 1 41 0 194 313 0 0 chr1 76225116 76225164 -166439189 - L2 LINE L2 -15 3257 3210 301 330 66 0 chr1 76225697 76225788 -166438565 - MIR SINE MIR -165 97 1 2102 128 3 0 chr1 76225852 76226148 -166438205 + AluSx SINE Alu 3 299 -13 201 229 33 0 chr1 76226238 76226299 -166438054 + (TAA)n Simple_repeat Simple_repeat 3 65 0 640 278 63 55 chr1 76226459 76226714 -166437639 - Charlie8 DNA MER1_type -2136 281 25 435 298 76 0 chr1 76226757 76226888 -166437465 + MIR SINE MIR 43 183 -79 22 35 0 0 chr1 76228353 76228382 -166435971 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr1 76228462 76228494 -166435859 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr1 76228959 76228994 -166435359 + AT_rich Low_complexity Low_complexity 1 35 0 552 301 26 13 chr1 76229653 76229809 -166434544 + L3 LINE CR1 338 495 -1082 198 281 0 67 chr1 76229913 76230002 -166434351 - L2 LINE L2 -4 3309 3227 190 254 17 17 chr1 76230071 76230130 -166434223 + L2 LINE L2 3214 3272 0 24 0 0 0 chr1 76230775 76230799 -166433554 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr1 76230922 76230954 -166433399 + AT_rich Low_complexity Low_complexity 1 32 0 446 314 109 47 chr1 76231428 76231982 -166432371 - L2 LINE L2 -81 3232 2596 1916 112 49 0 chr1 76232563 76232848 -166431505 + AluSx SINE Alu 1 299 -13 260 310 158 16 chr1 76236086 76236270 -166428083 + MIR SINE MIR 5 214 -48 264 73 73 0 chr1 76236412 76236467 -166427886 + CT-rich Low_complexity Low_complexity 1 59 0 202 59 0 59 chr1 76239851 76239885 -166424468 + (TTATA)n Simple_repeat Simple_repeat 3 34 0 426 293 133 0 chr1 76240623 76240773 -166423580 + MIR SINE MIR 23 192 -70 64 75 0 0 chr1 76240773 76240907 -166423446 + AT_rich Low_complexity Low_complexity 1 134 0 181 252 103 56 chr1 76241128 76241235 -166423118 - MIR SINE MIR -46 216 105 437 232 116 79 chr1 76241357 76241521 -166422832 - MER69A DNA AcHobo -6 171 2 23 33 0 0 chr1 76242336 76242366 -166421987 + AT_rich Low_complexity Low_complexity 1 30 0 240 253 23 35 chr1 76242594 76242681 -166421672 + CT-rich Low_complexity Low_complexity 1 86 0 349 323 137 34 chr1 76245423 76245918 -166418435 + L2 LINE L2 2317 2862 -452 872 256 153 23 chr1 76246527 76246835 -166417518 + L2 LINE L2 2966 3313 0 2172 242 28 15 chr1 76247002 76247354 -166416999 - MER119 DNA MER1_type -31 552 189 2329 97 0 0 chr1 76247354 76247663 -166416690 - AluSc SINE Alu 0 309 1 2172 242 28 15 chr1 76247663 76247855 -166416498 - MER119 DNA MER1_type -394 189 1 232 215 140 65 chr1 76247873 76247966 -166416387 + MIR SINE MIR 42 141 -67 181 305 0 0 chr1 76247996 76248055 -166416298 + L2 LINE L2 3195 3253 -19 433 254 33 117 chr1 76248710 76248950 -166415403 + MIR SINE MIR 1 220 -42 303 140 0 0 chr1 76248991 76249041 -166415312 + (CAT)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr1 76249477 76249498 -166414855 + AT_rich Low_complexity Low_complexity 1 21 0 330 233 71 41 chr1 76249516 76249641 -166414712 - MIR3 SINE MIR -6 202 74 291 292 109 29 chr1 76250204 76250341 -166414012 + MIR3 SINE MIR 20 167 -41 189 0 0 0 chr1 76251192 76251213 -166413140 + (A)n Simple_repeat Simple_repeat 1 21 0 278 302 54 39 chr1 76251365 76251494 -166412859 + L2 LINE L2 3141 3271 -1 26 0 0 0 chr1 76252428 76252454 -166411899 + AT_rich Low_complexity Low_complexity 1 26 0 255 228 114 13 chr1 76252512 76252591 -166411762 + MIR SINE MIR 175 261 -1 213 302 38 38 chr1 76253148 76253254 -166411099 + MER5A DNA MER1_type 36 141 -48 663 207 99 70 chr1 76253303 76253516 -166410837 - L2 LINE L2 0 3313 3095 2029 110 31 10 chr1 76256105 76256397 -166407956 + AluSg SINE Alu 1 298 -12 24 96 0 0 chr1 76258799 76258872 -166405481 + AT_rich Low_complexity Low_complexity 1 73 0 226 291 0 0 chr1 76259929 76260008 -166404345 + T-rich Low_complexity Low_complexity 1 79 0 760 286 56 0 chr1 76260809 76261005 -166403348 + MER63A DNA MER1_type 1 207 -3 2352 129 22 0 chr1 76261217 76261573 -166402780 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr1 76263206 76263241 -166401112 + AT_rich Low_complexity Low_complexity 1 35 0 21 89 0 0 chr1 76263369 76263425 -166400928 + AT_rich Low_complexity Low_complexity 1 56 0 227 133 22 0 chr1 76263535 76263580 -166400773 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 416 275 80 0 chr1 76263797 76263935 -166400418 - MIR SINE MIR 0 262 114 24 0 0 0 chr1 76264654 76264678 -166399675 + AT_rich Low_complexity Low_complexity 1 24 0 282 330 0 0 chr1 76265659 76265765 -166398588 + (CATA)n Simple_repeat Simple_repeat 3 108 0 180 77 0 0 chr1 76266352 76266378 -166397975 + (CCA)n Simple_repeat Simple_repeat 1 26 0 35 24 0 0 chr1 76267923 76267965 -166396388 + AT_rich Low_complexity Low_complexity 1 42 0 233 278 11 78 chr1 76269094 76269184 -166395169 - L2 LINE L2 -4 3268 3185 743 270 132 43 chr1 76269274 76269961 -166394392 + L1ME2 LINE L1 5193 5949 -215 2229 71 29 26 chr1 76270146 76270456 -166393897 - AluY SINE Alu 0 311 1 1188 313 89 25 chr1 76270778 76271055 -166393298 - L2 LINE L2 -449 2865 2607 1958 138 149 11 chr1 76271055 76271431 -166392922 - MSTA LTR MaLR 0 428 1 1188 313 89 25 chr1 76271431 76271782 -166392571 - L2 LINE L2 -707 2607 2197 595 236 64 35 chr1 76272385 76272588 -166391765 - L2 LINE L2 -1265 2049 1841 21 71 0 0 chr1 76272792 76272834 -166391519 + AT_rich Low_complexity Low_complexity 1 42 0 2005 138 7 0 chr1 76273579 76273876 -166390477 - AluSx SINE Alu -13 299 1 462 264 122 0 chr1 76274147 76274295 -166390058 - MIR SINE MIR -12 250 85 369 0 0 0 chr1 76275041 76275082 -166389271 + (TG)n Simple_repeat Simple_repeat 1 41 0 33 56 0 0 chr1 76275539 76275593 -166388760 + AT_rich Low_complexity Low_complexity 1 54 0 1774 128 0 45 chr1 76275595 76275884 -166388469 + AluSq SINE Alu 3 278 -35 30 27 0 0 chr1 76277124 76277161 -166387192 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 76277974 76278003 -166386350 + AT_rich Low_complexity Low_complexity 1 29 0 288 0 0 0 chr1 76280204 76280236 -166384117 + (TTG)n Simple_repeat Simple_repeat 2 33 0 453 294 134 11 chr1 76280849 76281036 -166383317 + MIR SINE MIR 52 261 -1 349 271 83 38 chr1 76281806 76281939 -166382414 - MIR SINE MIR -101 161 23 2860 206 30 39 chr1 76281969 76284281 -166380072 - L1MD1 LINE L1 -254 6382 3965 1099 180 23 18 chr1 76284281 76284498 -166379855 - AluJo SINE Alu -10 302 85 501 254 11 22 chr1 76284500 76284681 -166379672 - L1MD1 LINE L1 -2574 3966 3788 313 186 41 62 chr1 76284652 76284689 -166379664 - L1MD1 LINE L1 -4821 1719 1683 * 1983 117 31 55 chr1 76284689 76285073 -166379280 - THE1C LTR MaLR 0 375 1 313 186 41 62 chr1 76285073 76285132 -166379221 - L1MD1 LINE L1 -4857 1683 1625 6445 203 84 38 chr1 76285182 76285569 -166378784 - L1MD1 LINE L1 -4903 1637 1270 1731 167 7 3 chr1 76285569 76285857 -166378496 - AluJb SINE Alu -21 291 3 6445 203 84 38 chr1 76285857 76287033 -166377320 - L1MD1 LINE L1 -5270 1270 1 446 313 23 6 chr1 76287215 76287391 -166376962 - MARNA DNA Mariner -147 439 261 315 0 0 0 chr1 76288143 76288178 -166376175 + (CTG)n Simple_repeat Simple_repeat 2 36 0 583 294 44 10 chr1 76288523 76288727 -166375626 + MIR SINE MIR 2 212 -50 605 135 0 0 chr1 76288932 76289021 -166375332 + AluJb SINE Alu 206 294 -18 2010 133 0 7 chr1 76289477 76289778 -166374575 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 76290297 76290319 -166374034 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 76290414 76290444 -166373909 + AT_rich Low_complexity Low_complexity 1 30 0 1222 97 16 16 chr1 76293596 76293782 -166370571 + L1MA4A LINE L1 6113 6298 -5 491 261 117 33 chr1 76293902 76294082 -166370271 - MER63A DNA MER1_type -15 195 1 248 301 37 93 chr1 76294141 76294357 -166369996 + MIR SINE MIR 7 210 -52 366 23 0 0 chr1 76294364 76294407 -166369946 + (CA)n Simple_repeat Simple_repeat 1 43 0 435 264 170 61 chr1 76295205 76295252 -166369101 - MIR SINE MIR -12 250 209 928 220 6 0 chr1 76295252 76295429 -166368924 + MER45A DNA AcHobo 1 178 0 435 264 170 61 chr1 76295429 76295593 -166368760 - MIR SINE MIR -53 209 16 786 221 35 6 chr1 76296556 76296728 -166367625 - MER5B DNA MER1_type -1 177 1 442 307 53 26 chr1 76296968 76297157 -166367196 - MIR SINE MIR -46 216 23 32 0 0 0 chr1 76297776 76297808 -166366545 + AT_rich Low_complexity Low_complexity 1 32 0 2065 119 33 0 chr1 76298347 76298649 -166365704 - AluSx SINE Alu 0 312 1 204 231 0 0 chr1 76299057 76299109 -166365244 + L2 LINE L2 1912 1963 -1351 1190 259 144 25 chr1 76299128 76299696 -166364657 + L2 LINE L2 2231 2866 -448 4260 199 42 8 chr1 76299717 76301054 -166363299 - L1MB7 LINE L1 -9 6175 4793 479 260 102 133 chr1 76301077 76301477 -166362876 + L2 LINE L2 2921 3308 -5 321 26 0 0 chr1 76301675 76301713 -166362640 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 967 145 0 0 chr1 76301725 76301863 -166362490 - AluJo SINE Alu -49 263 126 1225 178 164 15 chr1 76302061 76302330 -166362023 + AluJb SINE Alu 1 309 -3 1457 194 29 19 chr1 76303839 76304148 -166360205 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 76307086 76307108 -166357245 + AT_rich Low_complexity Low_complexity 1 22 0 679 233 99 52 chr1 76308820 76309052 -166355301 - MIR SINE MIR 0 262 20 33 25 0 0 chr1 76310820 76310860 -166353493 + AT_rich Low_complexity Low_complexity 1 40 0 2406 65 3 0 chr1 76311529 76311835 -166352518 - AluSq SINE Alu 0 313 7 21 36 0 0 chr1 76312660 76312688 -166351665 + AT_rich Low_complexity Low_complexity 1 28 0 6806 23 0 0 chr1 76313031 76313828 -166350525 - L1PA2 LINE L1 -6 6149 5353 * 10931 30 0 0 chr1 76313813 76315133 -166349220 + L1P LINE L1 2917 4236 -1910 22 70 0 0 chr1 76315457 76315500 -166348853 + AT_rich Low_complexity Low_complexity 1 43 0 248 291 0 0 chr1 76316327 76316382 -166347971 + polypyrimidine Low_complexity Low_complexity 2 56 0 682 179 0 0 chr1 76318111 76318228 -166346125 - FLAM_C SINE Alu -25 118 2 657 203 166 18 chr1 76318245 76318462 -166345891 - MIR SINE MIR -1 261 13 2103 194 36 36 chr1 76318472 76318511 -166345842 + MLT1D LTR MaLR 1 39 -466 2008 159 0 0 chr1 76318511 76318812 -166345541 + AluJb SINE Alu 1 301 -11 2103 194 36 36 chr1 76318812 76319277 -166345076 + MLT1D LTR MaLR 38 505 0 1040 273 95 10 chr1 76320910 76321404 -166342949 - L1ME4a LINE L1 -3 6118 5583 216 97 0 0 chr1 76321551 76321582 -166342771 + (CA)n Simple_repeat Simple_repeat 2 32 0 1928 166 72 17 chr1 76321709 76322112 -166342241 - L1MB7 LINE L1 -9 6175 5751 477 343 104 52 chr1 76322129 76322657 -166341696 + L2 LINE L2 2714 3257 -15 344 250 0 14 chr1 76323565 76323637 -166340716 + L2 LINE L2 3201 3271 -1 32 26 0 0 chr1 76323645 76323684 -166340669 + AT_rich Low_complexity Low_complexity 1 39 0 2371 97 0 0 chr1 76324514 76324883 -166339470 - AluSp SINE Alu 0 369 1 312 342 17 0 chr1 76325160 76325277 -166339076 + MIR3 SINE MIR 74 192 -16 1749 193 0 0 chr1 76325659 76325965 -166338388 + AluJo SINE Alu 1 306 -6 281 314 20 0 chr1 76329302 76329404 -166334949 - MER103 DNA DNA 0 166 63 25 0 0 0 chr1 76329683 76329708 -166334645 + AT_rich Low_complexity Low_complexity 1 25 0 1591 143 3 83 chr1 76329946 76330247 -166334106 + AluJo SINE Alu 4 280 -32 2507 133 22 48 chr1 76330584 76331002 -166333351 - MER65A LTR ERV1 0 445 38 207 0 0 0 chr1 76331002 76331025 -166333328 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2507 133 22 48 chr1 76331025 76331063 -166333290 - MER65A LTR ERV1 -407 38 1 265 363 121 44 chr1 76331130 76331312 -166333041 - L2 LINE L2 0 3272 3077 2474 57 0 0 chr1 76331828 76332127 -166332226 + AluY SINE Alu 2 300 -11 29 0 0 0 chr1 76333430 76333459 -166330894 + AT_rich Low_complexity Low_complexity 1 29 0 294 29 0 0 chr1 76333625 76333660 -166330693 + (CA)n Simple_repeat Simple_repeat 1 35 0 291 388 48 0 chr1 76334216 76334319 -166330034 + MIR3 SINE MIR 52 159 -49 203 338 13 83 chr1 76334928 76335085 -166329268 + L2 LINE L2 3107 3252 -20 299 307 34 0 chr1 76337083 76337171 -166327182 + L2 LINE L2 3182 3272 0 231 36 0 0 chr1 76337682 76337710 -166326643 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2077 101 17 13 chr1 76339803 76340101 -166324252 + AluSq SINE Alu 1 299 -14 521 114 0 0 chr1 76340786 76340865 -166323488 - MADE1 DNA Mariner 0 80 2 2762 10 0 0 chr1 76341071 76341377 -166322976 + AluYa5 SINE Alu 1 306 -5 37 52 0 0 chr1 76341485 76341543 -166322810 + AT_rich Low_complexity Low_complexity 1 58 0 2208 127 0 0 chr1 76343512 76343820 -166320533 - AluSx SINE Alu -3 309 2 199 293 0 0 chr1 76344221 76344262 -166320091 - L2 LINE L2 -12 3301 3261 2151 114 0 3 chr1 76344523 76344822 -166319531 + AluSx SINE Alu 1 298 -14 287 332 33 52 chr1 76345595 76345806 -166318547 + L2 LINE L2 2851 3057 -215 323 240 13 27 chr1 76346007 76346082 -166318271 + L2 LINE L2 3227 3300 -13 195 88 88 0 chr1 76346100 76346134 -166318219 + L2 LINE L2 3261 3297 -16 2267 89 0 22 chr1 76348188 76348504 -166315849 - AluSg SINE Alu -1 309 1 182 284 60 0 chr1 76348639 76348706 -166315647 - L3b LINE CR1 -101 1482 1412 1934 99 7 0 chr1 76348955 76349227 -166315126 - AluSx SINE Alu -11 301 28 303 49 0 0 chr1 76351787 76351828 -166312525 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 328 86 16 chr1 76352197 76352325 -166312028 - L2 LINE L2 0 3272 3136 2164 116 16 0 chr1 76352451 76352754 -166311599 - AluJo SINE Alu -4 308 1 21 0 0 0 chr1 76359553 76359574 -166304779 + AT_rich Low_complexity Low_complexity 1 21 0 1810 113 9 70 chr1 76360162 76360491 -166303862 - AluSq SINE Alu -4 309 1 2064 141 0 0 chr1 76361749 76362048 -166302305 - AluSx SINE Alu -7 305 7 676 266 5 59 chr1 76362105 76362327 -166302026 - MIR SINE MIR -2 260 51 3103 206 36 3 chr1 76362771 76363403 -166300950 - MER82 DNA MER2_type 0 653 1 248 271 0 0 chr1 76363576 76363624 -166300729 - L2 LINE L2 -4 3268 3221 181 287 279 0 chr1 76363699 76363821 -166300532 - L2 LINE L2 -201 3071 2916 180 0 0 0 chr1 76363867 76363887 -166300466 + (A)n Simple_repeat Simple_repeat 1 20 0 467 261 46 8 chr1 76365483 76365613 -166298740 + MIR SINE MIR 92 226 -36 2213 97 10 13 chr1 76365639 76365948 -166298405 - AluSx SINE Alu -4 308 1 843 291 70 8 chr1 76366001 76366242 -166298111 + MIR SINE MIR 1 256 -6 338 376 45 38 chr1 76366277 76366543 -166297810 + L2 LINE L2 2765 3037 -276 22 0 0 0 chr1 76366987 76367009 -166297344 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 76367328 76367351 -166297002 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 76368522 76368550 -166295803 + AT_rich Low_complexity Low_complexity 1 28 0 2225 109 0 3 chr1 76368808 76369101 -166295252 + AluSq SINE Alu 1 292 -21 1790 169 30 0 chr1 76369429 76369725 -166294628 + AluJb SINE Alu 1 305 -7 415 323 131 0 chr1 76370524 76370722 -166293631 - MIR SINE MIR -38 224 1 27 62 0 0 chr1 76371284 76371332 -166293021 + AT_rich Low_complexity Low_complexity 1 48 0 30 45 0 0 chr1 76371997 76372041 -166292312 + AT_rich Low_complexity Low_complexity 1 44 0 184 312 280 11 chr1 76372074 76372167 -166292186 + MIR3 SINE MIR 9 126 -82 270 184 195 58 chr1 76372307 76372394 -166291959 - Tigger7 DNA MER2_type 0 2587 2489 * 1328 170 17 94 chr1 76372392 76372680 -166291673 - Tigger7 DNA MER2_type -2220 267 2 286 374 20 0 chr1 76373418 76373517 -166290836 + L2 LINE L2 3169 3269 -3 1947 154 13 0 chr1 76373551 76373857 -166290496 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 76374311 76374334 -166290019 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 30 chr1 76374891 76374910 -166289443 + AT_rich Low_complexity Low_complexity 1 20 -12 769 176 0 8 chr1 76374910 76375041 -166289312 + FLAM_C SINE Alu 1 130 -3 22 0 0 30 chr1 76375041 76375054 -166289299 + AT_rich Low_complexity Low_complexity 20 32 0 26 30 0 0 chr1 76375328 76375361 -166288992 + AT_rich Low_complexity Low_complexity 1 33 0 207 103 0 0 chr1 76376013 76376042 -166288311 + L2 LINE L2 3277 3305 -8 503 244 30 0 chr1 76376599 76376730 -166287623 + HAL1 LINE L1 1328 1462 -1045 2400 54 10 0 chr1 76376819 76377113 -166287240 - AluY SINE Alu -14 297 1 1196 73 18 0 chr1 76377144 76377308 -166287045 + AluY SINE Alu 145 311 0 843 184 18 0 chr1 76378098 76378261 -166286092 + MER5A DNA MER1_type 9 174 -15 339 310 0 0 chr1 76378381 76378468 -166285885 - L2 LINE L2 0 3272 3186 1719 215 55 29 chr1 76378642 76378794 -166285559 - MLT1D LTR MaLR -2 503 357 2107 106 0 40 chr1 76378794 76379116 -166285237 - AluSc SINE Alu 0 309 1 1719 215 55 29 chr1 76379116 76379451 -166284902 - MLT1D LTR MaLR -148 357 3 1104 197 85 87 chr1 76379606 76379833 -166284520 - MLT1A1 LTR MaLR 0 365 138 2247 88 3 16 chr1 76379833 76380139 -166284214 + AluSp SINE Alu 1 302 -11 1104 197 85 87 chr1 76380139 76380277 -166284076 - MLT1A1 LTR MaLR -227 138 1 25 65 0 0 chr1 76380536 76380582 -166283771 + AT_rich Low_complexity Low_complexity 1 46 0 446 192 20 30 chr1 76381506 76381605 -166282748 - MER5B DNA MER1_type -59 119 22 21 0 0 0 chr1 76382085 76382106 -166282247 + AT_rich Low_complexity Low_complexity 1 21 0 1543 205 13 3 chr1 76382109 76382412 -166281941 + AluJo SINE Alu 3 308 -4 222 208 0 0 chr1 76382624 76382672 -166281681 + A-rich Low_complexity Low_complexity 1 48 0 228 67 0 0 chr1 76382960 76382990 -166281363 + (A)n Simple_repeat Simple_repeat 1 30 0 2006 134 10 10 chr1 76383007 76383312 -166281041 + AluSx SINE Alu 1 305 -7 2179 111 0 7 chr1 76383346 76383644 -166280709 - AluSx SINE Alu -16 296 1 2297 258 67 58 chr1 76383645 76384449 -166279904 + L1M4 LINE L1 113 923 -5936 8653 205 62 22 chr1 76384517 76384758 -166279595 + L1M4 LINE L1 3668 3898 -3091 2298 120 10 44 chr1 76384758 76385142 -166279211 + MER83C LTR ERV1 3 373 0 8653 205 62 22 chr1 76385142 76387666 -166276687 + L1M4 LINE L1 3898 6542 -447 474 284 28 57 chr1 76387666 76387705 -166276648 - HAL1 LINE L1 -2300 207 168 1602 212 55 6 chr1 76387705 76388049 -166276304 + MLT1A1 LTR MaLR 1 361 -4 474 284 28 57 chr1 76388049 76388220 -166276133 - HAL1 LINE L1 -2339 168 3 235 322 33 0 chr1 76388512 76388602 -166275751 + MLT1G1 LTR MaLR 487 579 -16 2500 208 78 17 chr1 76390069 76390669 -166273684 + L1ME1 LINE L1 5525 6161 -5 248 278 78 99 chr1 76391007 76391198 -166273155 + MER5A DNA MER1_type 3 189 0 2304 92 0 3 chr1 76391980 76392283 -166272070 + AluSg SINE Alu 1 302 -8 23 0 0 0 chr1 76392312 76392335 -166272018 + AT_rich Low_complexity Low_complexity 1 23 0 3803 131 74 59 chr1 76392394 76392723 -166271630 + Tigger2 DNA MER2_type 1 324 -2394 2267 97 0 0 chr1 76392723 76393021 -166271332 + AluSx SINE Alu 1 298 -14 3803 131 74 59 chr1 76393021 76393437 -166270916 + Tigger2 DNA MER2_type 324 757 -1961 2617 146 7 34 chr1 76393494 76393940 -166270413 + Tigger2a DNA MER2_type 1 434 0 23 68 0 0 chr1 76394364 76394408 -166269945 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr1 76394866 76394909 -166269444 + AT_rich Low_complexity Low_complexity 1 43 0 1558 138 0 24 chr1 76394950 76395197 -166269156 + AluJb SINE Alu 23 263 -49 1930 138 9 19 chr1 76395850 76396169 -166268184 - 7SLRNA srpRNA srpRNA -3 317 2 246 105 0 0 chr1 76396958 76396996 -166267357 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr1 76397868 76397896 -166266457 + AT_rich Low_complexity Low_complexity 1 28 0 1225 165 70 4 chr1 76398002 76398245 -166266108 + L1MD3 LINE L1 7729 7987 -8 23 0 0 0 chr1 76398651 76398674 -166265679 + AT_rich Low_complexity Low_complexity 1 23 0 224 375 19 10 chr1 76399159 76399263 -166265090 + MIR SINE MIR 30 134 -128 1673 194 10 7 chr1 76399274 76399583 -166264770 - AluJb SINE Alu -2 310 1 1975 117 7 13 chr1 76399704 76400002 -166264351 + AluSx SINE Alu 9 304 -8 2468 104 6 3 chr1 76400981 76401335 -166263018 + THE1A LTR MaLR 1 355 0 25 51 0 0 chr1 76402728 76402767 -166261586 + AT_rich Low_complexity Low_complexity 1 39 0 1801 157 0 20 chr1 76403272 76403566 -166260787 + AluJo SINE Alu 1 288 -24 531 0 0 0 chr1 76403568 76403627 -166260726 + (GAGAA)n Simple_repeat Simple_repeat 3 61 0 263 253 133 0 chr1 76403812 76403887 -166260466 - MIR3 SINE MIR -3 205 121 1491 155 4 4 chr1 76404183 76404428 -166259925 + AluJo SINE Alu 1 245 -67 667 242 77 11 chr1 76404510 76404692 -166259661 - MIR SINE MIR -65 197 4 189 0 0 0 chr1 76405028 76405049 -166259304 + (A)n Simple_repeat Simple_repeat 1 21 0 558 326 17 6 chr1 76405450 76405622 -166258731 - MIR SINE MIR -46 216 43 1466 186 22 19 chr1 76406128 76406439 -166257914 + AluJo SINE Alu 1 312 0 2563 162 7 2 chr1 76407606 76408069 -166256284 - L1P LINE L1 -1400 4746 4282 4323 116 5 2 chr1 76408069 76408711 -166255642 + L1PA14 LINE L1 5515 6161 0 303 326 0 0 chr1 76408713 76408802 -166255551 - L1MC5 LINE L1 -76 7885 7797 5680 217 78 80 chr1 76408806 76411374 -166252979 + L1ME1 LINE L1 3052 5602 -564 2031 104 3 10 chr1 76411374 76411663 -166252690 - AluSx SINE Alu -23 289 3 5680 217 78 80 chr1 76411663 76411753 -166252600 + L1ME1 LINE L1 5602 5691 -475 508 206 11 0 chr1 76411753 76411845 -166252508 + LTR47A LTR ERVL 274 366 -86 1848 224 33 27 chr1 76411851 76411997 -166252356 + L1ME1 LINE L1 5676 5820 -346 1715 189 3 3 chr1 76411997 76412298 -166252055 + AluJo SINE Alu 1 301 -11 1848 224 33 27 chr1 76412298 76412634 -166251719 + L1ME1 LINE L1 5820 6161 -5 870 235 10 5 chr1 76412750 76412954 -166251399 + MER3 DNA MER1_type 1 205 -4 183 42 0 0 chr1 76413011 76413035 -166251318 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1598 154 30 34 chr1 76413041 76413308 -166251045 - AluJo SINE Alu -46 266 1 1050 99 0 0 chr1 76413527 76413658 -166250695 + AluSq/x SINE Alu 1 131 -181 709 211 0 0 chr1 76413658 76413791 -166250562 - AluJo/FLAM SINE Alu -169 133 1 340 224 171 115 chr1 76414413 76414598 -166249755 + L1ME4a LINE L1 5725 5898 -223 1676 196 0 7 chr1 76414598 76414884 -166249469 + AluJo SINE Alu 1 284 -28 23 54 0 0 chr1 76414886 76414923 -166249430 + AT_rich Low_complexity Low_complexity 1 37 0 340 224 171 115 chr1 76414923 76414945 -166249408 + L1ME4a LINE L1 5898 5917 -204 342 0 0 0 chr1 76414945 76414983 -166249370 + (CA)n Simple_repeat Simple_repeat 1 38 0 340 224 171 115 chr1 76414983 76415110 -166249243 + L1ME4a LINE L1 5917 6120 -1 2816 108 18 25 chr1 76415157 76415594 -166248759 + Tigger2a DNA MER2_type 1 434 0 1462 207 24 3 chr1 76415914 76416204 -166248149 + AluJo SINE Alu 1 296 -16 250 220 0 0 chr1 76416531 76416581 -166247772 + GA-rich Low_complexity Low_complexity 2 51 0 1911 152 14 0 chr1 76416621 76416911 -166247442 + AluJo SINE Alu 3 296 -16 4606 182 43 18 chr1 76417260 76417420 -166246933 + L1MC2 LINE L1 5288 5442 -902 2216 90 0 14 chr1 76417420 76417735 -166246618 + AluSp SINE Alu 1 311 0 4606 182 43 18 chr1 76417735 76418586 -166245767 + L1MC2 LINE L1 5442 6326 -18 1721 146 7 21 chr1 76418633 76418913 -166245440 - AluJo SINE Alu -25 287 12 864 154 0 0 chr1 76419143 76419266 -166245087 - FAM SINE Alu -30 155 33 263 254 229 0 chr1 76419340 76419458 -166244895 - MIR SINE MIR -14 248 104 226 323 141 0 chr1 76419709 76419808 -166244545 - L2 LINE L2 0 3313 3201 580 261 84 29 chr1 76419919 76420157 -166244196 - L2 LINE L2 0 3313 3063 252 0 0 0 chr1 76420462 76420490 -166243863 + (CA)n Simple_repeat Simple_repeat 2 29 0 273 247 84 78 chr1 76421974 76422128 -166242225 + MIR SINE MIR 23 177 -85 180 191 79 127 chr1 76422258 76422321 -166242032 - L2 LINE L2 -5 3308 3249 2203 116 3 3 chr1 76422611 76422921 -166241432 - AluSx SINE Alu -2 310 1 461 267 30 23 chr1 76423085 76423216 -166241137 - MIR SINE MIR -121 141 10 1535 160 56 14 chr1 76423443 76423731 -166240622 - AluJo SINE Alu -2 310 11 396 188 0 14 chr1 76423731 76423800 -166240553 - AluJ/FLAM SINE Alu -234 68 1 212 59 29 0 chr1 76424048 76424082 -166240271 + (TG)n Simple_repeat Simple_repeat 1 35 0 1749 144 3 18 chr1 76424082 76424367 -166239986 - AluSx SINE Alu -31 281 1 1105 186 110 69 chr1 76425338 76425628 -166238725 - AluJb SINE Alu 0 302 1 1499 162 40 70 chr1 76425893 76426160 -166238193 - AluJo SINE Alu -19 293 34 1771 171 0 7 chr1 76426160 76426441 -166237912 + AluJb SINE Alu 1 279 -33 1499 162 40 70 chr1 76426441 76426475 -166237878 - AluJo SINE Alu -278 34 1 189 0 0 0 chr1 76427965 76427986 -166236367 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 2214 116 0 0 chr1 76427991 76428284 -166236069 - AluSx SINE Alu -17 295 3 1364 146 108 59 chr1 76428517 76428804 -166235549 + AluJo SINE Alu 1 301 -11 313 262 139 25 chr1 76428840 76428962 -166235391 - MIR SINE MIR -2 260 125 524 235 49 80 chr1 76429257 76429419 -166234934 + MIR SINE MIR 1 157 -105 561 239 133 37 chr1 76429422 76429610 -166234743 - MIR SINE MIR -44 218 13 25 31 0 0 chr1 76430510 76430542 -166233811 + AT_rich Low_complexity Low_complexity 1 32 0 2110 139 3 0 chr1 76430624 76430927 -166233426 - AluSx SINE Alu -8 304 1 2084 113 3 17 chr1 76431514 76431815 -166232538 - AluSp SINE Alu -16 297 1 1840 166 7 7 chr1 76432164 76432460 -166231893 - AluJb SINE Alu -14 298 3 439 335 81 11 chr1 76432635 76432820 -166231533 + L2 LINE L2 2868 3065 -248 2231 103 7 0 chr1 76432884 76433186 -166231167 - AluSp SINE Alu -9 304 1 224 324 9 36 chr1 76433189 76433300 -166231053 + L2 LINE L2 3168 3275 -38 245 271 107 49 chr1 76433569 76433691 -166230662 - MIR3 SINE MIR -19 189 61 1998 82 89 14 chr1 76433717 76433997 -166230356 - AluY SINE Alu -10 301 1 204 297 33 66 chr1 76434359 76434450 -166229903 + L2 LINE L2 3169 3256 -16 276 237 26 0 chr1 76434566 76434642 -166229711 - MER2 DNA MER2_type 0 345 268 363 148 261 0 chr1 76434673 76434723 -166229630 - MER2 DNA MER2_type -139 206 170 1289 149 26 13 chr1 76434723 76434951 -166229402 + MER46A DNA MER2_type 2 232 -4 363 148 261 0 chr1 76434951 76434988 -166229365 - MER2 DNA MER2_type -175 170 96 1397 157 153 7 chr1 76435010 76435291 -166229062 + MER2 DNA MER2_type 14 335 -10 569 186 0 10 chr1 76435307 76435404 -166228949 - MER2 DNA MER2_type -248 97 2 180 298 21 0 chr1 76435799 76435846 -166228507 - L2 LINE L2 -17 3255 3208 2008 106 7 7 chr1 76436295 76436587 -166227766 + AluSx SINE Alu 1 292 -20 268 200 13 40 chr1 76437189 76437264 -166227089 + (CGG)n Simple_repeat Simple_repeat 3 75 0 183 162 0 0 chr1 76437422 76437459 -166226894 + (CGG)n Simple_repeat Simple_repeat 1 37 0 1369 137 113 90 chr1 76439649 76439984 -166224369 - MER2 DNA MER2_type 0 344 2 403 264 96 22 chr1 76440017 76440195 -166224158 + L2 LINE L2 2958 3148 -165 278 325 162 21 chr1 76440595 76440786 -166223567 - MIR SINE MIR -9 253 36 2086 85 0 0 chr1 76441676 76441934 -166222419 + AluSp SINE Alu 39 296 -17 185 315 19 19 chr1 76442335 76442389 -166221964 - L2 LINE L2 -25 3247 3194 329 85 0 17 chr1 76448926 76448985 -166215368 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 1966 121 18 0 chr1 76448994 76449267 -166215086 - AluSx SINE Alu -32 280 3 490 225 72 81 chr1 76449552 76449761 -166214592 - LTR41 LTR ERVL -15 758 552 489 250 17 51 chr1 76449895 76450071 -166214282 - LTR41 LTR ERVL -589 184 15 532 187 75 118 chr1 76450186 76450373 -166213980 + MER58A DNA MER1_type 46 224 0 220 27 54 0 chr1 76451049 76451086 -166213267 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2195 123 3 0 chr1 76452049 76452359 -166211994 - AluY SINE Alu 0 311 1 2144 89 58 0 chr1 76452522 76452815 -166211538 - AluY SINE Alu -1 310 1 460 292 80 0 chr1 76453428 76453565 -166210788 + MER20 DNA MER1_type 51 198 -21 1808 163 13 3 chr1 76454815 76455121 -166209232 - AluJb SINE Alu -3 309 1 2526 201 83 67 chr1 76455499 76456302 -166208051 - Charlie1a DNA MER1_type -639 816 1 2270 100 13 0 chr1 76456500 76456801 -166207552 - AluSp SINE Alu -8 305 1 2120 85 14 7 chr1 76457617 76457911 -166206442 + AluSg SINE Alu 1 296 -14 1237 166 0 37 chr1 76458116 76458333 -166206020 - AluJb SINE Alu -103 209 1 256 277 62 45 chr1 76458546 76458658 -166205695 - L2 LINE L2 -5 3267 3154 673 191 75 143 chr1 76458903 76459155 -166205198 + MER8 DNA MER2_type 1 235 -4 233 316 184 6 chr1 76459174 76459348 -166205005 - MIR SINE MIR -38 224 20 21 0 0 0 chr1 76459467 76459488 -166204865 + AT_rich Low_complexity Low_complexity 1 21 0 661 183 17 0 chr1 76459498 76459618 -166204735 + FLAM_C SINE Alu 1 122 -11 335 337 128 35 chr1 76461467 76461725 -166202628 - L2 LINE L2 -466 2848 2567 2781 189 126 26 chr1 76463264 76464254 -166200099 + L1MB8 LINE L1 4967 6062 -116 2077 127 0 10 chr1 76465289 76465589 -166198764 - AluJb SINE Alu -15 297 1 261 227 31 31 chr1 76466099 76466196 -166198157 + GA-rich Low_complexity Low_complexity 3 99 0 231 145 194 0 chr1 76468429 76468491 -166195862 - MER116 DNA Mariner -6 74 1 487 108 237 11 chr1 76468978 76469071 -166195282 - Tigger1 DNA MER2_type 0 2418 2305 1471 148 76 8 chr1 76469072 76469335 -166195018 + AluJo SINE Alu 1 281 -31 423 0 0 0 chr1 76470240 76470287 -166194066 + (TG)n Simple_repeat Simple_repeat 1 47 0 1877 94 36 33 chr1 76470287 76470562 -166193791 - AluSc SINE Alu -33 276 1 2140 103 10 32 chr1 76470762 76471073 -166193280 + AluSx SINE Alu 1 304 -8 2228 70 3 3 chr1 76471206 76471493 -166192860 + AluY SINE Alu 1 287 -24 1629 170 27 27 chr1 76471505 76471799 -166192554 + AluJb SINE Alu 4 297 -15 2457 47 0 7 chr1 76471905 76472202 -166192151 + AluY SINE Alu 1 295 -16 1730 215 80 22 chr1 76472281 76472733 -166191620 - MLT2F LTR ERVL 0 663 186 5648 138 55 72 chr1 76472781 76472995 -166191358 + Tigger3b DNA MER2_type 2 218 -2810 2462 53 3 0 chr1 76472995 76473295 -166191058 + AluY SINE Alu 1 301 -10 5648 138 55 72 chr1 76473295 76473627 -166190726 + Tigger3b DNA MER2_type 218 554 -2474 1912 109 40 0 chr1 76473627 76473901 -166190452 + AluSc SINE Alu 1 285 -24 5648 138 55 72 chr1 76473901 76474049 -166190304 + Tigger3b DNA MER2_type 554 703 -2325 1968 97 0 8 chr1 76474049 76474307 -166190046 + AluSx SINE Alu 33 288 -24 183 42 0 0 chr1 76474315 76474339 -166190014 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5648 138 55 72 chr1 76474339 76474884 -166189469 + Tigger3b DNA MER2_type 710 1231 0 311 173 58 0 chr1 76475548 76475600 -166188753 - MER8 DNA MER2_type -16 223 169 262 196 232 0 chr1 76475576 76475632 -166188721 + Tigger2 DNA MER2_type 2650 2718 0 * 186 150 0 0 chr1 76478086 76478126 -166186227 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr1 76478664 76478692 -166185661 + AT_rich Low_complexity Low_complexity 1 28 0 827 153 0 0 chr1 76479398 76479516 -166184837 + FLAM_C SINE Alu 1 118 -25 28 29 0 0 chr1 76479516 76479551 -166184802 + AT_rich Low_complexity Low_complexity 1 35 0 1185 197 128 13 chr1 76479798 76479923 -166184430 + MER58B DNA MER1_type 1 110 -2310 2409 97 0 0 chr1 76479923 76480232 -166184121 + AluSx SINE Alu 1 309 -3 1185 197 128 13 chr1 76480232 76480410 -166183943 + MER58B DNA MER1_type 110 339 -2 964 301 100 3 chr1 76480410 76480971 -166183382 - L2 LINE L2 -51 3262 2636 202 191 59 0 chr1 76480979 76481047 -166183306 - L2 LINE L2 -1241 2073 2002 326 113 0 0 chr1 76481216 76481269 -166183084 - L1MD1 LINE L1 -13 6623 6571 1871 178 0 9 chr1 76481269 76481584 -166182769 + AluJb SINE Alu 1 312 0 407 162 29 9 chr1 76481584 76481689 -166182664 + GA-rich Low_complexity Low_complexity 3 109 0 1885 177 73 58 chr1 76481691 76482223 -166182130 - L1MD1 LINE L1 -65 6571 6032 287 203 0 0 chr1 76482235 76482299 -166182054 - L1MD1 LINE L1 -1467 5073 5010 3122 214 31 7 chr1 76482317 76483088 -166181265 - L1MD1 LINE L1 -3148 3392 2603 961 157 11 45 chr1 76483089 76483267 -166181086 - AluSg/x SINE Alu -4 308 137 1956 119 50 40 chr1 76483268 76483671 -166180682 - L1MD1 LINE L1 -3927 2613 2207 2163 94 29 0 chr1 76483914 76484190 -166180163 - AluSq SINE Alu -28 285 2 1380 0 0 19 chr1 76484615 76484776 -166179577 - L1PA3 LINE L1 0 6155 5998 1911 132 55 25 chr1 76486172 76486499 -166177854 - MER1B DNA MER1_type 0 337 1 446 235 262 5 chr1 76486740 76486927 -166177426 - HAL1b LINE L1 -415 933 699 442 267 52 47 chr1 76487168 76487340 -166177013 - HAL1b LINE L1 -702 646 474 434 265 171 36 chr1 76487352 76487661 -166176692 - HAL1b LINE L1 -919 429 79 2189 99 20 0 chr1 76487957 76488249 -166176104 - AluSp SINE Alu -15 298 1 314 207 69 69 chr1 76488290 76488435 -166175918 + MER104 DNA Tc2 1 145 -35 2031 134 3 0 chr1 76488436 76488763 -166175590 + AluSx SINE Alu 1 328 0 1986 93 4 14 chr1 76489085 76489365 -166174988 + AluSc SINE Alu 33 309 0 250 158 18 35 chr1 76489891 76489948 -166174405 + (CATA)n Simple_repeat Simple_repeat 2 57 0 835 171 55 66 chr1 76490174 76490355 -166173998 + MER58A DNA MER1_type 42 220 -4 673 378 89 18 chr1 76490565 76491344 -166173009 - L2 LINE L2 -284 2988 2157 2193 115 3 3 chr1 76491725 76492037 -166172316 + AluSx SINE Alu 1 312 0 27 81 0 0 chr1 76492448 76492510 -166171843 + AT_rich Low_complexity Low_complexity 1 62 0 341 187 0 33 chr1 76492560 76492651 -166171702 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 23 0 0 0 chr1 76493720 76493743 -166170610 + GC_rich Low_complexity Low_complexity 1 23 0 2817 13 0 0 chr1 76493863 76494174 -166170179 + AluYa5 SINE Alu 1 311 0 1274 168 0 5 chr1 76495481 76495677 -166168676 - AluJb SINE Alu -32 280 86 1944 159 0 3 chr1 76495822 76496117 -166168236 - AluJb SINE Alu -18 294 1 755 162 7 52 chr1 76496396 76496562 -166167791 + FLAM_C SINE Alu 2 161 0 236 333 98 32 chr1 76496738 76496861 -166167492 + MIR3 SINE MIR 58 188 -20 185 193 0 18 chr1 76496917 76496974 -166167379 + (TA)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr1 76497841 76497866 -166166487 + AT_rich Low_complexity Low_complexity 1 25 0 254 245 168 58 chr1 76498100 76498255 -166166098 + MIR SINE MIR 2 173 -89 940 156 0 0 chr1 76498673 76498814 -166165539 + AluJo SINE Alu 1 141 -171 186 43 0 0 chr1 76498831 76498854 -166165499 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr1 76498854 76498881 -166165472 + AT_rich Low_complexity Low_complexity 1 27 0 1616 172 22 35 chr1 76499085 76499399 -166164954 + AluJo SINE Alu 1 310 -2 796 163 0 8 chr1 76499585 76499714 -166164639 - FLAM_C SINE Alu -5 128 1 2420 65 0 7 chr1 76499874 76500181 -166164172 + AluY SINE Alu 1 305 -6 318 250 0 12 chr1 76500644 76500724 -166163629 + CT-rich Low_complexity Low_complexity 1 79 0 2369 85 7 0 chr1 76501923 76502229 -166162124 + AluSg SINE Alu 1 308 -2 21 0 0 0 chr1 76502265 76502286 -166162067 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr1 76502326 76502355 -166161998 + AT_rich Low_complexity Low_complexity 1 29 0 205 355 0 0 chr1 76502434 76502496 -166161857 + GA-rich Low_complexity Low_complexity 2 63 0 531 252 23 0 chr1 76502499 76502630 -166161723 - MLT2C2 LTR ERVL -55 409 276 1064 211 18 0 chr1 76502631 76502849 -166161504 + AluJo SINE Alu 89 310 -2 1726 107 27 15 chr1 76502852 76503114 -166161239 - MLT2C2 LTR ERVL -190 274 10 414 269 40 92 chr1 76503302 76503551 -166160802 - L1MC4a LINE L1 -248 5914 5679 2067 119 3 3 chr1 76505346 76505632 -166158721 - AluSx SINE Alu -26 286 1 1007 93 0 0 chr1 76505639 76505791 -166158562 - AluSg/x SINE Alu 0 303 152 183 333 35 0 chr1 76505900 76505957 -166158396 - L2 LINE L2 -9 3263 3205 283 241 46 0 chr1 76506060 76506147 -166158206 - L1MC4 LINE L1 0 8042 7952 2073 106 43 0 chr1 76506150 76506432 -166157921 + AluSq SINE Alu 3 296 -17 298 238 0 38 chr1 76506469 76506549 -166157804 - MER112 DNA MER1_type -6 254 178 1740 147 0 67 chr1 76506611 76506938 -166157415 + AluJo SINE Alu 1 305 -7 2314 56 7 40 chr1 76507693 76507996 -166156357 + AluY SINE Alu 1 293 -18 356 132 0 77 chr1 76508370 76508461 -166155892 - L1M4 LINE L1 -1494 4652 4569 4789 174 36 39 chr1 76508490 76509444 -166154909 - L1MD1 LINE L1 0 6242 5279 1543 187 7 50 chr1 76509444 76509744 -166154609 - AluJb SINE Alu -25 287 1 4789 174 36 39 chr1 76509744 76510149 -166154204 - L1MD1 LINE L1 -963 5279 4874 1410 224 92 25 chr1 76510151 76510455 -166153898 - L1MD1 LINE L1 -1538 4608 4255 2178 122 3 0 chr1 76510455 76510766 -166153587 - AluSx SINE Alu 0 312 1 1410 224 92 25 chr1 76510766 76510974 -166153379 - L1MD1 LINE L1 -1891 4255 4062 23 0 0 0 chr1 76510989 76511012 -166153341 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 76511101 76511122 -166153231 + AT_rich Low_complexity Low_complexity 1 21 0 1743 119 25 0 chr1 76511595 76511839 -166152514 + AluSx SINE Alu 51 300 -12 2219 108 3 10 chr1 76511975 76512281 -166152072 + AluSx SINE Alu 1 304 -8 409 350 82 0 chr1 76512673 76512876 -166151477 - MIR SINE MIR -39 223 4 28 71 0 0 chr1 76513106 76513162 -166151191 + AT_rich Low_complexity Low_complexity 1 56 0 2269 68 30 17 chr1 76513638 76513933 -166150420 - AluSq SINE Alu -13 300 2 27 0 0 0 chr1 76514589 76514616 -166149737 + AT_rich Low_complexity Low_complexity 1 27 0 527 260 77 29 chr1 76514897 76515105 -166149248 - MLT1J LTR MaLR -1 510 293 2292 82 0 38 chr1 76515114 76515433 -166148920 + AluY SINE Alu 2 308 -3 958 184 63 20 chr1 76516165 76516589 -166147764 - LTR54 LTR ERV1 0 510 1 2228 109 3 3 chr1 76516603 76516906 -166147447 + AluSx SINE Alu 1 303 -9 220 286 0 0 chr1 76517119 76517175 -166147178 - L2 LINE L2 0 3272 3217 22 35 0 0 chr1 76517946 76517975 -166146378 + AT_rich Low_complexity Low_complexity 1 29 0 180 305 19 76 chr1 76518035 76518099 -166146254 - L2 LINE L2 -37 3235 3178 2214 110 0 7 chr1 76518099 76518399 -166145954 + AluSg1 SINE Alu 1 298 -11 180 305 19 76 chr1 76518399 76518439 -166145914 - L2 LINE L2 -94 3178 3137 1812 195 0 3 chr1 76518829 76519132 -166145221 + AluJb SINE Alu 1 302 -10 1894 129 0 84 chr1 76519134 76519467 -166144886 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr1 76519471 76519495 -166144858 + AT_rich Low_complexity Low_complexity 1 24 0 467 278 108 26 chr1 76519644 76519838 -166144515 + MIR SINE MIR 5 214 -48 1676 184 0 26 chr1 76519842 76520146 -166144207 + AluJb SINE Alu 1 296 -16 1083 214 149 29 chr1 76520234 76520424 -166143929 + MER34B LTR ERV1 182 348 -217 2190 129 10 0 chr1 76520424 76520726 -166143627 - AluSx SINE Alu -7 305 1 1083 214 149 29 chr1 76520726 76520843 -166143510 + MER34B LTR ERV1 348 526 -39 722 256 145 9 chr1 76521482 76521709 -166142644 + MIR SINE MIR 2 259 -3 346 351 139 13 chr1 76521768 76522070 -166142283 - L2 LINE L2 -683 2631 2292 880 214 25 62 chr1 76522164 76522317 -166142036 + MLT1J LTR MaLR 3 145 -366 2016 155 0 7 chr1 76522317 76522626 -166141727 - AluJo SINE Alu -3 309 3 880 214 25 62 chr1 76522626 76522715 -166141638 + MLT1J LTR MaLR 145 236 -275 1188 89 238 33 chr1 76522720 76522934 -166141419 + AluSg1 SINE Alu 33 290 -19 1008 95 14 102 chr1 76522978 76523261 -166141092 - AluY SINE Alu -12 299 42 330 246 79 40 chr1 76524612 76524738 -166139615 + L1ME4a LINE L1 5991 6121 0 21 0 0 0 chr1 76524840 76524861 -166139492 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 76525450 76525474 -166138879 + AT_rich Low_complexity Low_complexity 1 24 0 670 243 26 0 chr1 76526810 76526962 -166137391 - MIR SINE MIR -48 214 59 25 0 0 0 chr1 76526988 76527013 -166137340 + AT_rich Low_complexity Low_complexity 1 25 0 271 302 198 16 chr1 76527319 76527511 -166136842 + MIR SINE MIR 18 244 -18 1921 152 43 25 chr1 76528282 76528650 -166135703 + THE1C LTR MaLR 1 375 0 208 279 89 0 chr1 76528871 76528950 -166135403 + MIR SINE MIR 120 205 -57 1558 275 91 93 chr1 76528996 76529128 -166135225 - L2 LINE L2 -1 3312 3181 183 42 0 0 chr1 76529128 76529152 -166135201 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 1558 275 91 93 chr1 76529152 76530316 -166134037 - L2 LINE L2 -132 3181 1997 43563 41 4 3 chr1 76530325 76536464 -166127889 + L1PA3 LINE L1 9 6152 -3 25 0 0 0 chr1 76536464 76536489 -166127864 + AT_rich Low_complexity Low_complexity 1 25 0 408 284 127 8 chr1 76536489 76536623 -166127730 - L2 LINE L2 -1304 2010 1861 2115 103 4 4 chr1 76537053 76537356 -166126997 + AluSq SINE Alu 2 304 0 358 361 75 41 chr1 76537392 76537780 -166126573 - L2 LINE L2 -454 2860 2460 270 56 0 0 chr1 76537917 76537953 -166126400 + (TG)n Simple_repeat Simple_repeat 2 37 0 233 378 31 8 chr1 76538778 76538905 -166125448 - L3 LINE CR1 -347 1230 1101 633 232 0 52 chr1 76539937 76540092 -166124261 + MER58A DNA MER1_type 46 192 -32 22 0 0 0 chr1 76540307 76540329 -166124024 + AT_rich Low_complexity Low_complexity 1 22 0 635 152 9 27 chr1 76541005 76541117 -166123236 - MER20 DNA MER1_type 0 219 110 912 189 51 0 chr1 76541570 76541745 -166122608 - MER20 DNA MER1_type -1 218 35 402 332 126 4 chr1 76542241 76542518 -166121835 + L2 LINE L2 2928 3238 -75 258 108 54 11 chr1 76542960 76543053 -166121300 + (TA)n Simple_repeat Simple_repeat 2 98 0 616 248 7 0 chr1 76544027 76544180 -166120173 - L1 LINE L1 -3613 2533 2380 419 54 0 0 chr1 76544595 76544651 -166119702 - L1PA5 LINE L1 -1 6153 6098 17707 45 2 0 chr1 76544651 76546851 -166117502 - L1P LINE L1 -854 5292 3089 8121 43 1 0 chr1 76546851 76547870 -166116483 + L1P LINE L1 2064 3083 -3063 21 71 0 0 chr1 76548287 76548329 -166116024 + AT_rich Low_complexity Low_complexity 1 42 0 1619 192 7 17 chr1 76548557 76548844 -166115509 - AluJo SINE Alu -26 286 3 2433 97 0 0 chr1 76549487 76549797 -166114556 + AluSg SINE Alu 1 310 0 3146 325 101 39 chr1 76551054 76553236 -166111117 + L2 LINE L2 978 3307 -6 27 81 0 0 chr1 76553469 76553531 -166110822 + AT_rich Low_complexity Low_complexity 1 62 0 259 384 10 0 chr1 76555604 76555703 -166108650 - L2 LINE L2 -1019 2295 2196 28 86 0 0 chr1 76556127 76556197 -166108156 + AT_rich Low_complexity Low_complexity 1 70 0 1626 176 0 4 chr1 76557796 76558075 -166106278 - AluJo SINE Alu -14 298 21 3546 137 29 27 chr1 76558254 76558874 -166105479 + L1MB1 LINE L1 5548 6168 0 1049 206 145 0 chr1 76558973 76559269 -166105084 - L1MC4 LINE L1 -144 7898 7560 2004 134 23 7 chr1 76559940 76560247 -166104106 - AluSx SINE Alu 0 312 1 21 71 0 0 chr1 76561058 76561100 -166103253 + AT_rich Low_complexity Low_complexity 1 42 0 327 347 61 0 chr1 76561404 76561600 -166102753 - L2 LINE L2 -50 3263 3056 771 234 46 107 chr1 76561677 76562127 -166102226 + MLT1F LTR MaLR 1 489 -78 246 224 0 0 chr1 76562132 76562181 -166102172 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 28 48 0 0 chr1 76563336 76563378 -166100975 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 30 chr1 76564980 76564991 -166099362 + AT_rich Low_complexity Low_complexity 1 11 -21 1364 134 25 0 chr1 76564991 76565229 -166099124 + L1MA3 LINE L1 6062 6305 0 22 0 0 30 chr1 76565229 76565250 -166099103 + AT_rich Low_complexity Low_complexity 11 32 0 234 310 99 0 chr1 76565478 76565549 -166098804 - L2 LINE L2 -1 3312 3235 467 300 70 8 chr1 76565589 76565832 -166098521 + MIR SINE MIR 5 262 0 234 216 135 0 chr1 76565872 76565946 -166098407 + HsTC2 DNA Tc2 1 84 -1814 180 286 63 16 chr1 76566467 76566530 -166097823 - L3 LINE CR1 -2 1575 1510 235 235 86 0 chr1 76567351 76567432 -166096921 - L1ME LINE L1 -324 5797 5710 386 296 86 43 chr1 76567663 76568140 -166096213 - L1ME LINE L1 -755 5391 4939 24 67 0 0 chr1 76569129 76569174 -166095179 + AT_rich Low_complexity Low_complexity 1 45 0 236 218 77 0 chr1 76569585 76569663 -166094690 + L1MC4 LINE L1 6619 6702 -1340 471 257 150 48 chr1 76569852 76570041 -166094312 - L1ME3A LINE L1 -220 5950 5782 2246 113 0 0 chr1 76570041 76570341 -166094012 - AluSq SINE Alu -13 300 1 471 257 150 48 chr1 76570341 76570603 -166093750 - L1ME3A LINE L1 -388 5782 5440 986 289 58 6 chr1 76570723 76571098 -166093255 + LTR16C LTR ERVL 33 468 -23 510 170 45 36 chr1 76571168 76571280 -166093073 - MER6B DNA MER2_type -1 209 97 258 257 14 40 chr1 76571874 76571948 -166092405 - MIR SINE MIR -95 113 42 768 244 99 0 chr1 76572062 76572263 -166092090 - MER58A DNA MER1_type 0 224 4 21 0 0 0 chr1 76572347 76572368 -166091985 + AT_rich Low_complexity Low_complexity 1 21 0 2273 107 0 7 chr1 76573168 76573476 -166090877 + AluSq SINE Alu 1 306 -7 913 190 34 10 chr1 76574815 76575020 -166089333 + MER2 DNA MER2_type 1 210 -135 21 71 0 0 chr1 76575029 76575071 -166089282 + AT_rich Low_complexity Low_complexity 1 42 0 292 303 46 9 chr1 76575332 76575441 -166088912 + MLT1L LTR MaLR 195 307 -308 1176 115 5 31 chr1 76575441 76575633 -166088720 + L1PA15 LINE L1 5422 5608 -557 * 42677 42 14 4 chr1 76575632 76581728 -166082625 + L1PA4 LINE L1 3 6159 0 2750 144 35 68 chr1 76581728 76582320 -166082033 + L1PA15 LINE L1 5593 6165 0 3897 88 25 0 chr1 76582889 76583457 -166080896 - L1P LINE L1 -2560 3586 3005 2474 107 0 6 chr1 76583456 76583803 -166080550 - L1P3 LINE L1 -6112 349 5 * 2025 144 7 3 chr1 76584392 76584691 -166079662 - AluJb SINE Alu -10 302 3 230 293 170 9 chr1 76584744 76584850 -166079503 - L2 LINE L2 -8 3305 3183 297 391 30 75 chr1 76584910 76585245 -166079108 - L2 LINE L2 -62 3210 2891 482 347 96 44 chr1 76585560 76586010 -166078343 + L2 LINE L2 2377 2849 -465 863 169 0 45 chr1 76586193 76586347 -166078006 + MER46A DNA MER2_type 1 147 -89 23 0 0 0 chr1 76586519 76586542 -166077811 + AT_rich Low_complexity Low_complexity 1 23 0 1364 200 49 74 chr1 76586807 76587002 -166077351 + MER58B DNA MER1_type 1 185 -2235 1031 209 130 36 chr1 76587002 76587332 -166077021 - MLT1A1 LTR MaLR -4 361 1 1364 200 49 74 chr1 76587332 76587486 -166076867 + MER58B DNA MER1_type 185 341 0 1068 278 139 30 chr1 76587617 76588114 -166076239 + MER90 LTR ERV1 3 553 -22 261 0 0 0 chr1 76588289 76588318 -166076035 + (CAG)n Simple_repeat Simple_repeat 2 30 0 461 333 161 26 chr1 76588630 76589060 -166075293 + L2 LINE L2 2225 2712 -602 1074 263 32 19 chr1 76589370 76589686 -166074667 - L2 LINE L2 0 3313 2994 632 265 152 10 chr1 76589728 76589932 -166074421 + MIR SINE MIR 15 247 -15 434 236 36 77 chr1 76590436 76590534 -166073819 - L1ME3A LINE L1 -6 6164 6064 1259 183 3 7 chr1 76590534 76590819 -166073534 + L1MA4 LINE L1 6012 6295 -5 434 236 36 77 chr1 76590819 76590940 -166073413 - L1ME3A LINE L1 -106 6064 5954 371 250 86 0 chr1 76590948 76591064 -166073289 - L1ME3 LINE L1 -168 5994 5869 * 1413 255 39 14 chr1 76591063 76591494 -166072859 + L1ME2 LINE L1 5672 6113 -51 1926 188 67 88 chr1 76591502 76591740 -166072613 - L1MA10 LINE L1 -12 6322 6081 2082 98 3 20 chr1 76591740 76592036 -166072317 - AluSp SINE Alu -22 291 1 1926 188 67 88 chr1 76592036 76592421 -166071932 - L1MA10 LINE L1 -253 6081 5712 262 212 15 0 chr1 76592421 76592487 -166071866 + L1MA10 LINE L1 6268 6334 0 922 232 56 0 chr1 76592616 76592814 -166071539 + MIR SINE MIR 9 217 -45 517 282 53 38 chr1 76594305 76594529 -166069824 + MIR SINE MIR 3 232 -30 1900 176 62 7 chr1 76595060 76595224 -166069129 - L1MA9 LINE L1 0 6312 6159 14377 114 29 51 chr1 76595224 76595437 -166068916 + Tigger1 DNA MER2_type 1 217 -2201 2091 144 0 0 chr1 76595437 76595735 -166068618 - AluSx SINE Alu -14 298 1 14377 114 29 51 chr1 76595735 76597376 -166066977 + Tigger1 DNA MER2_type 217 1790 -628 1632 187 7 3 chr1 76597376 76597659 -166066694 - AluJb SINE Alu -27 285 2 14377 114 29 51 chr1 76597659 76598275 -166066078 + Tigger1 DNA MER2_type 1790 2418 0 1900 176 62 7 chr1 76598275 76598543 -166065810 - L1MA9 LINE L1 -153 6159 5856 42755 34 21 1 chr1 76598544 76604571 -166059782 + L1PA2 LINE L1 4 6155 0 2537 150 41 89 chr1 76604577 76605275 -166059078 - L1MA9 LINE L1 -444 5868 5203 1681 179 6 16 chr1 76605275 76605587 -166058766 - AluJo SINE Alu -3 309 1 2537 150 41 89 chr1 76605587 76605690 -166058663 - L1MA9 LINE L1 -1109 5203 5097 286 329 178 53 chr1 76605965 76606190 -166058163 - L2 LINE L2 -4 3268 3016 1536 152 4 0 chr1 76607363 76607593 -166056760 - 7SLRNA srpRNA srpRNA -88 232 2 1522 150 20 0 chr1 76607961 76608215 -166056138 - L1MC1 LINE L1 -13 6320 6062 261 109 47 0 chr1 76608261 76608325 -166056028 + (TA)n Simple_repeat Simple_repeat 1 67 0 183 100 0 0 chr1 76608361 76608391 -166055962 + (TA)n Simple_repeat Simple_repeat 1 30 0 1096 197 33 70 chr1 76609379 76609709 -166054644 + L1MB7 LINE L1 5867 6184 0 923 173 13 13 chr1 76609727 76609877 -166054476 - FRAM SINE Alu -26 150 1 316 349 78 16 chr1 76610323 76610452 -166053901 + L2 LINE L2 3136 3272 0 27 49 0 0 chr1 76615857 76615898 -166048455 + AT_rich Low_complexity Low_complexity 1 41 0 240 241 19 0 chr1 76617210 76617264 -166047089 - L2 LINE L2 -5 3308 3254 225 337 48 42 chr1 76617424 76617590 -166046763 + MIR SINE MIR 86 252 -10 225 353 152 45 chr1 76617668 76618266 -166046087 + L2 LINE L2 1978 2639 -675 1302 204 60 23 chr1 76618321 76618758 -166045595 + MLT1B LTR MaLR 2 390 0 264 259 176 26 chr1 76619066 76619379 -166044974 - L1ME4a LINE L1 -37 6084 5725 237 330 57 101 chr1 76619529 76620004 -166044349 + L2 LINE L2 2331 2784 -530 2404 65 0 13 chr1 76621658 76621968 -166042385 + AluY SINE Alu 1 306 -5 460 320 154 58 chr1 76623115 76623741 -166040612 - L2 LINE L2 -35 3237 2554 452 279 25 44 chr1 76623773 76623931 -166040422 + L2 LINE L2 3156 3310 -3 664 314 113 24 chr1 76623944 76624272 -166040081 - L2 LINE L2 -8 3305 2949 278 376 129 5 chr1 76624287 76624481 -166039872 - L2 LINE L2 -787 2527 2310 1353 93 103 5 chr1 76624521 76624735 -166039618 + L1PA7 LINE L1 5914 6148 -6 26 104 0 0 chr1 76626280 76626376 -166037977 + AT_rich Low_complexity Low_complexity 1 96 0 380 313 36 29 chr1 76626567 76626874 -166037479 - L1M4 LINE L1 -1575 4571 4263 550 292 64 27 chr1 76626962 76627181 -166037172 + MIR SINE MIR 27 253 -9 629 248 7 0 chr1 76628398 76628551 -166035802 - L1M4 LINE L1 -3613 2533 2380 422 54 0 0 chr1 76628965 76629021 -166035332 - L1PA5 LINE L1 -1 6153 6098 33239 40 21 2 chr1 76629021 76633242 -166031111 - L1P LINE L1 -854 5292 992 747 174 0 0 chr1 76633356 76633471 -166030882 - MER6B DNA MER2_type -161 115 1 394 303 8 0 chr1 76634859 76634978 -166029375 + MER94 DNA DNA 15 134 0 259 276 164 0 chr1 76635158 76635274 -166029079 + MIR SINE MIR 125 259 -3 21 71 0 0 chr1 76635573 76635615 -166028738 + AT_rich Low_complexity Low_complexity 1 42 0 1149 153 64 8 chr1 76635671 76635920 -166028433 + L1MA4 LINE L1 6034 6296 -4 333 348 51 0 chr1 76635959 76636137 -166028216 + MIR SINE MIR 5 191 -71 2185 231 69 21 chr1 76636697 76637413 -166026940 + L1ME1 LINE L1 5359 6099 -67 1476 191 47 4 chr1 76637413 76637690 -166026663 - AluJb SINE Alu -23 289 1 2185 231 69 21 chr1 76637690 76637729 -166026624 + L1ME1 LINE L1 6099 6135 -31 31 99 0 0 chr1 76639648 76639749 -166024604 + AT_rich Low_complexity Low_complexity 1 101 0 568 291 79 13 chr1 76641282 76641509 -166022844 + MIR SINE MIR 13 254 -8 243 319 81 34 chr1 76641872 76642107 -166022246 + HAL1 LINE L1 1103 1348 -1159 580 224 29 62 chr1 76642137 76642347 -166022006 + HAL1 LINE L1 1452 1654 -853 * 3074 244 31 19 chr1 76642330 76643354 -166020999 + L1PB4 LINE L1 2 1099 -5042 2071 103 7 3 chr1 76643354 76643636 -166020717 - AluSx SINE Alu -19 293 11 3074 244 31 19 chr1 76643636 76644077 -166020276 + L1PB4 LINE L1 1099 1534 -4607 6285 59 9 1 chr1 76644083 76644879 -166019474 + L1PA7 LINE L1 5343 6144 -10 11583 203 62 24 chr1 76644895 76645641 -166018712 + L1M4c LINE L1 2054 2771 -3611 351 0 0 0 chr1 76645641 76645680 -166018673 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr1 76645679 76645703 -166018650 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 11583 203 62 24 chr1 76645680 76648182 -166016171 + L1M4c LINE L1 2771 5413 -969 1831 162 21 9 chr1 76648241 76648574 -166015779 + L1MA9 LINE L1 5782 6118 -194 1542 146 9 169 chr1 76648820 76648980 -166015373 + MLT1A1 LTR MaLR 1 185 -180 1942 124 11 0 chr1 76648980 76649262 -166015091 + AluSx SINE Alu 1 285 -27 396 0 0 0 chr1 76649265 76649309 -166015044 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1542 146 9 169 chr1 76649309 76649576 -166014777 + MLT1A1 LTR MaLR 187 363 -2 1261 271 54 16 chr1 76649938 76650380 -166013973 + L1PB4 LINE L1 1694 2152 -419 254 301 36 0 chr1 76650734 76650817 -166013536 + MIR SINE MIR 164 249 -13 217 220 34 0 chr1 76651214 76651273 -166013080 + (TA)n Simple_repeat Simple_repeat 2 62 0 1235 285 118 25 chr1 76651704 76652220 -166012133 - L2 LINE L2 -1884 1430 867 304 234 75 43 chr1 76652817 76652911 -166011442 - MIR SINE MIR -61 201 105 19938 97 4 6 chr1 76653320 76657013 -166007340 - L1PA7 LINE L1 0 6154 2472 8488 105 2 2 chr1 76657019 76658284 -166006069 + L1PA7 LINE L1 1209 2473 -3673 185 274 105 63 chr1 76659066 76659161 -166005192 - L2 LINE L2 -20 3293 3195 22 35 0 0 chr1 76660978 76661007 -166003346 + AT_rich Low_complexity Low_complexity 1 29 0 457 255 57 83 chr1 76661229 76661543 -166002810 + L1M4 LINE L1 3139 3444 -2702 979 318 88 21 chr1 76661544 76662419 -166001934 + L1M4 LINE L1 4165 5098 -1048 12908 208 25 19 chr1 76662476 76665607 -165998746 + L1PB4 LINE L1 2146 5297 -913 2352 165 9 7 chr1 76665607 76666044 -165998309 + L1PB4 LINE L1 5780 6217 -3 248 206 44 88 chr1 76666087 76666223 -165998130 + L1M4 LINE L1 5191 5320 -826 273 381 29 22 chr1 76666815 76666954 -165997399 - L2 LINE L2 -188 3084 2945 2269 88 0 0 chr1 76667038 76667348 -165997005 + AluSg SINE Alu 1 310 0 509 363 104 22 chr1 76667368 76667955 -165996398 - L2 LINE L2 -455 2859 2225 314 375 38 82 chr1 76668159 76668426 -165995927 - L2 LINE L2 -2 3270 3016 2333 81 0 29 chr1 76668446 76668755 -165995598 - AluSp SINE Alu -13 300 1 1545 38 0 0 chr1 76668962 76669146 -165995207 + L1PA4 LINE L1 5828 6011 -144 7326 39 0 0 chr1 76669273 76671016 -165993337 + L1PA3 LINE L1 4393 6137 -18 3419 159 11 8 chr1 76671016 76671038 -165993315 + L1P LINE L1 4393 6159 -743 2750 144 35 68 chr1 76671038 76671630 -165992723 + L1PA15 LINE L1 5593 6165 0 3897 88 25 0 chr1 76672199 76672767 -165991586 - L1P LINE L1 -2560 3586 3005 2474 107 0 6 chr1 76672766 76673113 -165991240 - L1P3 LINE L1 -6112 349 5 * 1829 164 10 7 chr1 76673702 76674001 -165990352 - AluJb SINE Alu -10 302 3 632 171 0 93 chr1 76674002 76674142 -165990211 - AluJo/FLAM SINE Alu -185 127 1 442 308 101 12 chr1 76674667 76674836 -165989517 + L2 LINE L2 2908 3091 -222 399 351 0 0 chr1 76675519 76675629 -165988724 + MIR SINE MIR 28 138 -70 2149 113 55 12 chr1 76675733 76676079 -165988274 + MER46B DNA MER2_type 1 236 0 14312 87 5 10 chr1 76677216 76679282 -165985071 - L1P LINE L1 -2027 4119 2064 937 62 0 0 chr1 76679282 76679412 -165984941 + L1P LINE L1 3089 3218 -2928 317 226 45 45 chr1 76679548 76679725 -165984628 + C-rich Low_complexity Low_complexity 3 179 0 236 218 77 0 chr1 76680216 76680294 -165984059 - L1MC4 LINE L1 -1340 6702 6619 24 67 0 0 chr1 76680705 76680750 -165983603 + AT_rich Low_complexity Low_complexity 1 45 0 181 300 147 40 chr1 76682659 76682809 -165981544 + L2 LINE L2 3139 3304 -9 293 256 0 37 chr1 76682823 76682905 -165981448 + GA-rich Low_complexity Low_complexity 1 79 0 25 0 0 0 chr1 76683034 76683059 -165981294 + AT_rich Low_complexity Low_complexity 1 25 0 1526 181 42 3 chr1 76685677 76685964 -165978389 + AluJo SINE Alu 1 298 -14 21 0 0 0 chr1 76687872 76687893 -165976460 + AT_rich Low_complexity Low_complexity 1 21 0 1404 115 24 5 chr1 76688085 76688293 -165976060 - AluSq SINE Alu -101 212 1 823 181 6 19 chr1 76688293 76688453 -165975900 - MLT1A1 LTR MaLR -207 158 1 1287 216 23 10 chr1 76688698 76689003 -165975350 - L1MA9 LINE L1 -194 6118 5810 26 0 0 0 chr1 76689150 76689176 -165975177 + GC_rich Low_complexity Low_complexity 1 26 0 3116 153 7 4 chr1 76689485 76690029 -165974324 - L1P LINE L1 -893 5253 4708 269 352 41 96 chr1 76690747 76691017 -165973336 - L2 LINE L2 -2 3270 3016 2367 81 0 29 chr1 76691037 76691346 -165973007 - AluSp SINE Alu -13 300 1 2596 42 0 24 chr1 76691553 76691886 -165972467 + L1PA4 LINE L1 5828 6152 -3 212 167 0 0 chr1 76691905 76691947 -165972406 + A-rich Low_complexity Low_complexity 1 42 0 2088 118 17 0 chr1 76692459 76692748 -165971605 - AluSg SINE Alu -15 295 2 207 420 43 0 chr1 76693154 76693223 -165971130 + L3b LINE CR1 1455 1526 -57 774 284 69 45 chr1 76694020 76694397 -165969956 - L2 LINE L2 -4 3309 2924 258 243 86 14 chr1 76694683 76694753 -165969600 + L2 LINE L2 3188 3262 -51 598 274 71 57 chr1 76695084 76695365 -165968988 - L2 LINE L2 -8 3305 3021 268 304 92 87 chr1 76696433 76696617 -165967736 - MER5A DNA MER1_type -1 188 4 647 289 11 16 chr1 76697544 76697731 -165966622 + MIR SINE MIR 13 198 -64 546 259 17 17 chr1 76697733 76697907 -165966446 + MER104 DNA Tc2 7 180 0 21 0 0 0 chr1 76698002 76698023 -165966330 + AT_rich Low_complexity Low_complexity 1 21 0 211 264 19 0 chr1 76698099 76698152 -165966201 + L2 LINE L2 3251 3304 -9 183 80 0 0 chr1 76698824 76698849 -165965504 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 215 300 33 0 chr1 76698850 76698910 -165965443 - L2 LINE L2 -12 3301 3240 221 359 0 0 chr1 76699341 76699419 -165964934 - L2 LINE L2 -7 3306 3229 429 171 26 8 chr1 76699830 76699947 -165964406 + GA-rich Low_complexity Low_complexity 3 121 0 821 98 45 0 chr1 76699947 76700059 -165964294 + THE1B LTR MaLR 1 117 -247 6068 109 35 3 chr1 76700062 76701019 -165963334 + THE1B-int LTR MaLR 578 1580 0 2107 140 70 9 chr1 76701019 76701362 -165962991 + THE1B LTR MaLR 1 364 0 197 147 13 53 chr1 76701410 76701485 -165962868 + GA-rich Low_complexity Low_complexity 3 74 0 488 297 92 41 chr1 76701520 76701910 -165962443 + L1MEd LINE L1 532 941 -5264 319 227 49 32 chr1 76702300 76702459 -165961894 + L1MEd LINE L1 2196 2314 -3901 645 309 70 27 chr1 76702526 76703278 -165961075 + L1MEd LINE L1 2428 3212 -3003 227 304 36 0 chr1 76703326 76703382 -165960971 + L2 LINE L2 3148 3205 -67 323 323 79 11 chr1 76703660 76703926 -165960427 - L1ME3 LINE L1 -211 5951 5668 319 245 111 67 chr1 76703955 76704071 -165960282 - L1ME3 LINE L1 -1098 5048 4939 2229 86 20 10 chr1 76704071 76704374 -165959979 - AluSx SINE Alu -6 306 1 319 245 111 67 chr1 76704374 76704510 -165959843 - L1ME3 LINE L1 -1207 4939 4785 211 277 0 0 chr1 76704936 76704983 -165959370 + (CA)n Simple_repeat Simple_repeat 2 48 0 291 319 106 31 chr1 76705078 76705332 -165959021 + L2 LINE L2 2692 2964 -350 181 348 9 52 chr1 76705493 76705608 -165958745 + L2 LINE L2 3151 3260 -12 514 287 103 31 chr1 76705650 76705873 -165958480 - MIR SINE MIR -4 258 20 871 101 29 14 chr1 76705873 76706085 -165958268 + CT-rich Low_complexity Low_complexity 1 215 0 402 111 0 0 chr1 76706085 76706139 -165958214 + (TC)n Simple_repeat Simple_repeat 2 55 0 2038 136 10 3 chr1 76706139 76706449 -165957904 - AluSx SINE Alu 0 312 1 25 0 0 0 chr1 76707144 76707169 -165957184 + AT_rich Low_complexity Low_complexity 1 25 0 293 256 0 37 chr1 76707298 76707380 -165956973 + CT-rich Low_complexity Low_complexity 1 79 0 181 300 147 40 chr1 76707394 76707544 -165956809 - L2 LINE L2 -9 3304 3139 729 217 0 0 chr1 76708800 76708975 -165955378 + (TG)n Simple_repeat Simple_repeat 2 176 0 227 348 169 8 chr1 76709398 76709516 -165954837 - L2 LINE L2 -4 3268 3132 183 244 0 0 chr1 76709546 76709591 -165954762 + L2 LINE L2 3267 3311 -2 540 289 185 33 chr1 76709686 76710413 -165953940 - L2 LINE L2 -262 3010 2174 209 191 0 0 chr1 76710985 76711032 -165953321 + (CA)n Simple_repeat Simple_repeat 1 47 0 237 98 0 0 chr1 76711101 76711142 -165953211 + (CA)n Simple_repeat Simple_repeat 1 41 0 234 193 53 18 chr1 76711670 76711727 -165952626 - MIR SINE MIR -87 175 117 515 289 42 17 chr1 76712844 76713131 -165951222 - HAL1 LINE L1 -74 2433 2140 775 239 53 18 chr1 76713194 76713420 -165950933 - L1MA9 LINE L1 -40 6272 6039 447 287 130 59 chr1 76713427 76713751 -165950602 - HAL1 LINE L1 -431 2076 1730 743 183 38 0 chr1 76713846 76713977 -165950376 - FRAM SINE Alu -41 135 1 383 333 41 0 chr1 76713977 76714124 -165950229 + MIR SINE MIR 70 222 -40 210 233 0 0 chr1 76714107 76714150 -165950203 + L2 LINE L2 3222 3264 -8 * 755 263 142 88 chr1 76714476 76715089 -165949264 + L2 LINE L2 1447 2092 -1222 973 289 107 65 chr1 76715092 76715697 -165948656 + L2 LINE L2 2478 3118 -195 2142 119 3 3 chr1 76715697 76716008 -165948345 - AluSq SINE Alu 0 313 3 973 289 107 65 chr1 76716008 76716212 -165948141 + L2 LINE L2 3118 3312 -1 23 33 0 0 chr1 76716476 76716506 -165947847 + AT_rich Low_complexity Low_complexity 1 30 0 2149 113 55 12 chr1 76718150 76718496 -165945857 - MER46B DNA MER2_type 0 236 1 421 340 10 49 chr1 76718507 76718710 -165945643 - MIR SINE MIR -40 222 28 442 308 101 12 chr1 76719393 76719562 -165944791 - L2 LINE L2 -222 3091 2908 1500 177 25 50 chr1 76720087 76720404 -165943949 + AluJo SINE Alu 1 309 -3 1575 213 76 5 chr1 76720587 76720967 -165943386 + L1MB7 LINE L1 5769 6175 -9 559 326 29 93 chr1 76721979 76722421 -165941932 + L3 LINE CR1 1117 1530 -47 251 206 168 28 chr1 76722443 76722550 -165941803 + MLT1I LTR MaLR 280 401 -8 291 343 29 9 chr1 76722584 76722689 -165941664 + MIR3 SINE MIR 74 180 -28 750 78 0 0 chr1 76723049 76723151 -165941202 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 284 323 109 30 chr1 76724382 76724583 -165939770 + MLT1L LTR MaLR 194 410 -205 284 250 0 12 chr1 76724637 76724717 -165939636 + MLT1K LTR MaLR 488 566 -22 642 204 21 31 chr1 76725687 76725878 -165938475 + MER53 DNA DNA 1 189 0 251 139 0 0 chr1 76726394 76726430 -165937923 - U2 snRNA snRNA -152 36 1 29 47 0 0 chr1 76726430 76726473 -165937880 + AT_rich Low_complexity Low_complexity 1 43 0 300 137 0 0 chr1 76726842 76726893 -165937460 + (TG)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr1 76727672 76727692 -165936661 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 322 308 81 22 chr1 76727788 76727973 -165936380 - MIR SINE MIR -59 203 8 289 302 123 0 chr1 76728143 76728249 -165936104 - L2 LINE L2 -1 3312 3194 281 311 168 0 chr1 76728435 76728602 -165935751 + L2 LINE L2 3119 3313 0 1713 158 10 19 chr1 76729041 76729351 -165935002 + L1PA15 LINE L1 5858 6164 -1 224 254 85 51 chr1 76729722 76729781 -165934572 + L2 LINE L2 3201 3261 -11 388 316 29 63 chr1 76729782 76729988 -165934365 - L2 LINE L2 -689 2625 2427 220 283 68 124 chr1 76730425 76730853 -165933500 + L2 LINE L2 312 715 -2599 701 264 83 0 chr1 76730956 76731149 -165933204 - HAL1 LINE L1 -621 1886 1678 21 57 0 0 chr1 76731230 76731265 -165933088 + AT_rich Low_complexity Low_complexity 1 35 0 1531 273 76 32 chr1 76731275 76732015 -165932338 - HAL1 LINE L1 -998 1509 738 277 198 25 0 chr1 76732272 76732353 -165932000 + (TA)n Simple_repeat Simple_repeat 2 84 0 271 193 23 0 chr1 76732429 76732517 -165931836 + (TA)n Simple_repeat Simple_repeat 2 91 0 333 350 88 36 chr1 76732682 76733070 -165931283 + L2 LINE L2 1933 2340 -974 279 282 103 3 chr1 76733155 76733316 -165931037 + MIR SINE MIR 39 262 0 * 816 318 85 63 chr1 76733309 76733900 -165930453 + L2 LINE L2 2356 2959 -355 22 0 0 0 chr1 76733928 76733950 -165930403 + AT_rich Low_complexity Low_complexity 1 22 0 184 358 22 58 chr1 76734059 76734196 -165930157 + L2 LINE L2 3182 3313 0 217 380 44 19 chr1 76734292 76734450 -165929903 - MIR3 SINE MIR -43 165 4 357 24 0 0 chr1 76734523 76734565 -165929788 + (CA)n Simple_repeat Simple_repeat 2 43 0 212 229 33 0 chr1 76736360 76736421 -165927932 + CT-rich Low_complexity Low_complexity 2 64 0 309 328 47 47 chr1 76736508 76736700 -165927653 - L2 LINE L2 -7 3306 3115 1300 170 46 108 chr1 76736920 76737309 -165927044 + MLT1A1 LTR MaLR 1 365 0 1316 169 40 7 chr1 76737387 76737660 -165926693 - L1MA4 LINE L1 -8 6292 6011 2162 75 4 0 chr1 76737753 76738053 -165926300 - AluSc SINE Alu 0 315 15 1459 171 26 91 chr1 76740632 76741048 -165923305 + MLT1B LTR MaLR 1 389 -1 202 154 0 26 chr1 76741255 76741294 -165923059 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 509 281 63 50 chr1 76741931 76742547 -165921806 - L1ME4a LINE L1 -1 6120 5458 29 0 0 0 chr1 76743699 76743728 -165920625 + AT_rich Low_complexity Low_complexity 1 29 0 272 295 120 44 chr1 76744389 76744572 -165919781 + L2 LINE L2 2887 3083 -189 195 276 17 17 chr1 76744707 76744765 -165919588 - L3b LINE CR1 -94 1489 1432 183 139 0 0 chr1 76745301 76745337 -165919016 + (CA)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr1 76745384 76745418 -165918935 + AT_rich Low_complexity Low_complexity 1 34 0 202 300 185 8 chr1 76745927 76746057 -165918296 - L2 LINE L2 -570 2744 2592 236 29 0 29 chr1 76746379 76746413 -165917940 + (TTTTC)n Simple_repeat Simple_repeat 1 33 0 461 222 104 0 chr1 76746517 76746652 -165917701 - MER53 DNA DNA -18 171 23 231 263 211 11 chr1 76746757 76746852 -165917501 + L2 LINE L2 3188 3301 -12 24 77 0 0 chr1 76746852 76746904 -165917449 + AT_rich Low_complexity Low_complexity 1 52 0 1452 220 87 27 chr1 76746949 76747029 -165917324 + MLT1B LTR MaLR 1 75 -315 2236 157 20 0 chr1 76747029 76747424 -165916929 + MER57A LTR ERV1 1 403 0 1452 220 87 27 chr1 76747424 76747711 -165916642 + MLT1B LTR MaLR 75 390 0 225 366 11 0 chr1 76749499 76749592 -165914761 + MIR SINE MIR 1 94 -168 1613 257 47 32 chr1 76750024 76750328 -165914025 - LTR55 LTR ERV -8 540 223 2248 125 16 25 chr1 76750328 76750695 -165913658 - THE1B LTR MaLR 0 364 1 1613 257 47 32 chr1 76750695 76750920 -165913433 - LTR55 LTR ERV -325 223 3 22 0 0 0 chr1 76751422 76751444 -165912909 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr1 76751866 76751922 -165912431 + AT_rich Low_complexity Low_complexity 1 56 0 333 321 0 0 chr1 76751954 76752066 -165912287 + GA-rich Low_complexity Low_complexity 2 113 0 1325 276 137 35 chr1 76752068 76752905 -165911448 + L1MC4 LINE L1 7012 8025 -17 299 270 58 15 chr1 76753198 76753335 -165911018 + L1ME LINE L1 5684 5826 -295 34 24 0 0 chr1 76753434 76753475 -165910878 + AT_rich Low_complexity Low_complexity 1 41 0 321 361 90 13 chr1 76754611 76754766 -165909587 + MIR3 SINE MIR 21 187 -21 2251 101 14 113 chr1 76756377 76756574 -165907779 + THE1C LTR MaLR 1 137 -238 1910 102 0 4 chr1 76756574 76756829 -165907524 - AluY SINE Alu -57 254 1 2251 101 14 113 chr1 76756829 76757047 -165907306 + THE1C LTR MaLR 137 375 0 9836 117 34 35 chr1 76757047 76758622 -165905731 + THE1C-int LTR MaLR 1 1574 -6 2760 95 0 11 chr1 76758627 76759006 -165905347 + THE1C LTR MaLR 1 375 0 585 287 218 21 chr1 76760549 76760925 -165903428 + LTR16A LTR ERVL 8 457 0 311 353 40 23 chr1 76761147 76761320 -165903033 + L2 LINE L2 2149 2324 -990 22 0 0 0 chr1 76762382 76762404 -165901949 + AT_rich Low_complexity Low_complexity 1 22 0 1880 182 42 30 chr1 76762478 76762907 -165901446 + Tigger2a DNA MER2_type 1 434 0 349 329 0 0 chr1 76763131 76763216 -165901137 + L2 LINE L2 3229 3313 0 736 89 0 0 chr1 76763501 76763602 -165900751 - AluSg/x SINE Alu -24 288 188 239 291 18 0 chr1 76763603 76763658 -165900695 + L2 LINE L2 3210 3265 -48 * 430 317 17 39 chr1 76763635 76763815 -165900538 - MIR SINE MIR -74 188 13 1799 202 26 6 chr1 76763868 76764215 -165900138 + MLT1A1 LTR MaLR 12 365 0 25 0 0 0 chr1 76764644 76764669 -165899684 + AT_rich Low_complexity Low_complexity 1 25 0 311 316 72 9 chr1 76765015 76765295 -165899058 + L1MC4a LINE L1 5268 5563 -796 316 311 64 31 chr1 76765353 76765770 -165898583 + L1MC4a LINE L1 5546 6011 -1797 567 131 0 0 chr1 76765905 76766004 -165898349 + L1MB4 LINE L1 6080 6178 -2 3128 156 33 2 chr1 76766242 76766792 -165897561 + L1MC1 LINE L1 5760 6326 -7 818 108 8 0 chr1 76766885 76767015 -165897338 + L1MB3 LINE L1 6051 6181 -2 23 54 0 0 chr1 76767015 76767052 -165897301 + AT_rich Low_complexity Low_complexity 1 37 0 722 261 110 7 chr1 76767063 76767362 -165896991 + L1MEc LINE L1 1488 1817 -4579 713 291 49 32 chr1 76767509 76768001 -165896352 + L1MEc LINE L1 2023 2522 -3874 266 240 64 24 chr1 76768022 76768147 -165896206 + L1ME4a LINE L1 5992 6121 0 261 57 0 0 chr1 76768507 76768542 -165895811 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 183 299 130 48 chr1 76768948 76769155 -165895198 + L2 LINE L2 1881 2104 -1210 834 87 22 38 chr1 76769644 76769827 -165894526 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1178 79 17 14 chr1 76769843 76770091 -165894262 + (TTTC)n Simple_repeat Simple_repeat 1 432 0 21 0 0 0 chr1 76770608 76770629 -165893724 + AT_rich Low_complexity Low_complexity 1 21 0 198 143 0 0 chr1 76770770 76770805 -165893548 + (TATG)n Simple_repeat Simple_repeat 3 37 0 22 0 0 0 chr1 76771229 76771251 -165893102 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 76771708 76771737 -165892616 + AT_rich Low_complexity Low_complexity 1 29 0 37 0 0 0 chr1 76772065 76772102 -165892251 + AT_rich Low_complexity Low_complexity 1 37 0 201 355 103 5 chr1 76773212 76773426 -165890927 + L2 LINE L2 2935 3169 -144 1575 189 0 33 chr1 76774338 76774645 -165889708 - AluJb SINE Alu -15 297 1 2154 108 3 10 chr1 76775212 76775526 -165888827 - AluSx SINE Alu 0 312 1 246 128 0 0 chr1 76775574 76775613 -165888740 + (TG)n Simple_repeat Simple_repeat 2 40 0 2083 131 0 7 chr1 76777542 76777848 -165886505 - AluY SINE Alu -2 309 6 203 196 214 0 chr1 76778265 76778321 -165886032 - L2 LINE L2 0 3313 3246 276 260 67 67 chr1 76778367 76778517 -165885836 + MLT1J2 LTR MaLR 20 169 -281 290 270 48 48 chr1 76778598 76778724 -165885629 + MLT1I LTR MaLR 284 409 0 599 274 32 85 chr1 76778909 76779157 -165885196 + MLT1H LTR MaLR 125 359 -190 268 297 190 23 chr1 76779331 76779543 -165884810 - L2 LINE L2 -297 3016 2770 1148 296 18 6 chr1 76780268 76780609 -165883744 - LTR16C LTR ERVL -12 479 135 226 381 0 0 chr1 76780878 76780941 -165883412 + L2 LINE L2 3137 3199 -73 392 302 52 47 chr1 76781243 76781435 -165882918 + L3 LINE CR1 824 1016 -561 1466 213 109 24 chr1 76781998 76782421 -165881932 + MER65C LTR ERV1 3 461 0 630 263 153 21 chr1 76782423 76782704 -165881649 + MLT1I LTR MaLR 63 380 -29 402 259 34 41 chr1 76786380 76786527 -165877826 - L2 LINE L2 0 3313 3168 650 292 187 0 chr1 76787466 76787675 -165876678 - MIR SINE MIR -2 260 13 2269 95 3 0 chr1 76788303 76788587 -165875766 - AluSc SINE Alu -22 287 3 446 55 0 0 chr1 76788724 76788779 -165875574 - L1P2 LINE L1 -562 5592 5538 334 80 0 20 chr1 76788779 76788826 -165875527 + L1PA6 LINE L1 6096 6144 -10 1999 168 83 13 chr1 76790876 76791274 -165873079 - MSTB LTR MaLR 0 426 1 8325 188 34 12 chr1 76791274 76792889 -165871464 - MSTB-int LTR MaLR 0 1651 1 2267 173 28 21 chr1 76792889 76793312 -165871041 - MSTB LTR MaLR 0 426 1 455 193 8 59 chr1 76794072 76794109 -165870244 + MER53 DNA DNA 1 38 -151 2009 198 19 19 chr1 76794109 76794523 -165869830 + MLT2D LTR ERVL 1 414 0 455 193 8 59 chr1 76794523 76794604 -165869749 + MER53 DNA DNA 38 113 -76 1774 198 81 63 chr1 76794646 76795105 -165869248 - MLT2B1 LTR ERVL -51 469 3 195 262 0 0 chr1 76795138 76795180 -165869173 + L2 LINE L2 3231 3272 0 2006 164 0 0 chr1 76796022 76796333 -165868020 - AluJb SINE Alu -1 311 1 298 359 56 35 chr1 76796361 76796503 -165867850 - L2 LINE L2 -1 3271 3127 3397 137 16 57 chr1 76796582 76797211 -165867142 + LTR26 LTR ERV1 1 603 0 23 0 0 0 chr1 76798384 76798407 -165865946 + AT_rich Low_complexity Low_complexity 1 23 0 440 335 40 13 chr1 76798467 76798619 -165865734 + MIR SINE MIR 1 156 -106 22 0 0 0 chr1 76799195 76799217 -165865136 + AT_rich Low_complexity Low_complexity 1 22 0 2121 115 3 13 chr1 76800307 76800619 -165863734 - AluSx SINE Alu 0 312 4 5068 213 58 38 chr1 76800826 76802756 -165861597 - L1MDb LINE L1 -3884 2837 862 714 326 3 31 chr1 76803052 76803371 -165860982 - L1MDb LINE L1 -6211 329 20 201 226 0 0 chr1 76803409 76803462 -165860891 + CT-rich Low_complexity Low_complexity 2 54 0 334 309 73 9 chr1 76803565 76803675 -165860678 - L2 LINE L2 -2 3270 3154 513 362 200 24 chr1 76804314 76805063 -165859290 - L2 LINE L2 -420 2894 2014 846 176 7 0 chr1 76805092 76805228 -165859125 - MLT1A1 LTR MaLR -34 331 195 718 299 22 57 chr1 76805321 76805414 -165858939 - L2 LINE L2 -1312 2002 1907 1174 226 188 52 chr1 76805414 76805988 -165858365 + MLT1E1 LTR MaLR 3 654 0 718 299 22 57 chr1 76805988 76806208 -165858145 - L2 LINE L2 -1407 1907 1700 301 365 65 17 chr1 76806915 76807145 -165857208 - MIR SINE MIR -20 242 2 966 201 0 31 chr1 76807574 76807768 -165856585 - MER5A DNA MER1_type -1 188 1 840 248 41 14 chr1 76807776 76807994 -165856359 - MER58A DNA MER1_type 0 224 1 301 241 71 43 chr1 76809000 76809141 -165855212 + MER103 DNA DNA 22 166 0 1338 203 59 59 chr1 76809724 76810098 -165854255 + MLT1A2 LTR MaLR 1 374 0 2403 100 20 0 chr1 76810212 76810562 -165853791 + L1PB3 LINE L1 5433 5789 -365 297 85 47 57 chr1 76810564 76810670 -165853683 + (TA)n Simple_repeat Simple_repeat 1 105 0 2032 149 26 6 chr1 76810716 76811065 -165853288 + L1PB3 LINE L1 5799 6154 0 306 0 0 0 chr1 76811807 76811841 -165852512 + (TG)n Simple_repeat Simple_repeat 1 34 0 475 293 142 10 chr1 76812725 76812930 -165851423 + MIR SINE MIR 31 262 0 260 257 211 9 chr1 76813414 76813523 -165850830 - MIR SINE MIR -66 196 66 675 168 0 9 chr1 76813710 76813823 -165850530 + AluJb SINE Alu 171 282 -30 25 51 0 0 chr1 76813844 76813883 -165850470 + AT_rich Low_complexity Low_complexity 1 39 0 354 326 206 5 chr1 76815243 76815427 -165848926 - MIR SINE MIR -10 252 32 913 146 14 0 chr1 76815446 76815590 -165848763 + MER3 DNA MER1_type 5 150 -59 17804 159 46 18 chr1 76815609 76815717 -165848636 + L1MA3 LINE L1 11 115 -7450 977 42 0 0 chr1 76815717 76815835 -165848518 + L1PA5 LINE L1 6032 6149 -5 17804 159 46 18 chr1 76815835 76818882 -165845471 + L1MA3 LINE L1 115 3254 -4311 6842 59 0 0 chr1 76818849 76819702 -165844651 + L1PA7 LINE L1 6720 7572 -1 * 13410 165 12 15 chr1 76819682 76823828 -165840525 + L1MA3 LINE L1 3202 7356 -368 2867 13 0 0 chr1 76823828 76824146 -165840207 + AluYb8 SINE Alu 1 318 0 13410 165 12 15 chr1 76824146 76824514 -165839839 + L1MA3 LINE L1 7356 7723 -1 21 0 0 0 chr1 76825561 76825582 -165838771 + AT_rich Low_complexity Low_complexity 1 21 0 222 240 288 34 chr1 76825641 76825787 -165838566 - MIR SINE MIR -45 217 35 24 53 0 0 chr1 76826856 76826894 -165837459 + AT_rich Low_complexity Low_complexity 1 38 0 569 261 111 10 chr1 76826932 76827139 -165837214 + L2 LINE L2 2635 2862 -452 249 247 25 99 chr1 76827209 76827371 -165836982 + L2 LINE L2 3000 3149 -164 620 264 77 28 chr1 76827444 76827808 -165836545 - L1MEc LINE L1 -3549 2666 2285 446 303 96 44 chr1 76828247 76828518 -165835835 - L1MEc LINE L1 -970 1606 1282 1280 322 37 2 chr1 76828557 76828958 -165835395 + LTR33 LTR ERVL 1 415 -106 272 323 37 12 chr1 76829362 76829523 -165834830 - L1MEc LINE L1 -5953 252 88 240 35 0 0 chr1 76830711 76830740 -165833613 + (CA)n Simple_repeat Simple_repeat 2 30 0 216 141 0 47 chr1 76830838 76830902 -165833451 + (TTTCC)n Simple_repeat Simple_repeat 3 63 0 254 342 45 9 chr1 76831092 76831203 -165833150 + L2 LINE L2 3153 3267 -5 24 67 0 0 chr1 76832932 76832977 -165831376 + AT_rich Low_complexity Low_complexity 1 45 0 4145 185 91 46 chr1 76833711 76834511 -165829842 - L1MB1 LINE L1 -3 6369 5606 338 23 0 0 chr1 76834511 76834555 -165829798 + L1PA4 LINE L1 6109 6152 -3 4145 185 91 46 chr1 76834555 76835698 -165828655 - L1MB1 LINE L1 -766 5606 4341 242 216 81 0 chr1 76835834 76835908 -165828445 - L1MB1 LINE L1 -5240 1041 962 * 709 345 83 42 chr1 76835894 76836326 -165828027 - L1MB1 LINE L1 -5757 524 4 24 32 0 0 chr1 76836613 76836644 -165827709 + AT_rich Low_complexity Low_complexity 1 31 0 2330 78 0 0 chr1 76837294 76837590 -165826763 - AluY SINE Alu -15 296 1 404 346 19 0 chr1 76838118 76838222 -165826131 + MER91A DNA MER1_type 91 196 0 420 270 26 43 chr1 76838583 76838698 -165825655 - MIR SINE MIR -90 172 60 368 231 0 11 chr1 76839027 76839118 -165825235 - LTR33A LTR ERVL -28 495 406 450 325 154 14 chr1 76839161 76839447 -165824906 - LTR33A LTR ERVL -196 327 2 320 290 47 12 chr1 76840055 76840224 -165824129 + L1MEd LINE L1 1053 1227 -4892 322 337 123 22 chr1 76840224 76840500 -165823853 + HAL1 LINE L1 1337 1640 -867 209 379 30 0 chr1 76840971 76841037 -165823316 + MER5A DNA MER1_type 51 118 -71 23 33 0 0 chr1 76841599 76841629 -165822724 + AT_rich Low_complexity Low_complexity 1 30 0 321 274 74 32 chr1 76842302 76842492 -165821861 + HAL1 LINE L1 1152 1349 -1158 1413 256 106 14 chr1 76842499 76843127 -165821226 - L1M4 LINE L1 -1730 4416 3721 377 233 147 0 chr1 76843146 76843275 -165821078 - L1M4 LINE L1 -2473 3673 3526 * 1149 290 70 6 chr1 76843272 76843789 -165820564 + L1MEd LINE L1 2180 2729 -3400 612 244 98 0 chr1 76843787 76844012 -165820341 - L1M4 LINE L1 -3119 3027 2781 * 2450 216 31 18 chr1 76844482 76844991 -165819362 + MLT2B3 LTR ERVL 1 519 -35 428 35 17 0 chr1 76844991 76845049 -165819304 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 2450 216 31 18 chr1 76845049 76845086 -165819267 + MLT2B3 LTR ERVL 519 554 0 22 35 0 0 chr1 76846013 76846042 -165818311 + AT_rich Low_complexity Low_complexity 1 29 0 48 32 0 0 chr1 76847234 76847296 -165817057 + AT_rich Low_complexity Low_complexity 1 62 0 5293 228 51 63 chr1 76847714 76849509 -165814844 + MER110-int LTR ERV1 2875 4647 0 1039 260 173 5 chr1 76849651 76850020 -165814333 + MER110 LTR ERV1 19 449 -42 204 40 0 0 chr1 76850751 76850776 -165813577 + (GA)n Simple_repeat Simple_repeat 2 26 0 813 293 73 33 chr1 76850791 76851340 -165813013 + L1MEd LINE L1 3590 4160 -1969 201 39 0 0 chr1 76851403 76851429 -165812924 + (TG)n Simple_repeat Simple_repeat 1 26 0 2375 88 48 3 chr1 76852553 76852907 -165811446 + L1PA13 LINE L1 5787 6156 -7 733 307 40 8 chr1 76853522 76853773 -165810580 + MIR SINE MIR 1 259 -3 244 320 21 0 chr1 76853798 76853895 -165810458 + L1M4c LINE L1 2383 2481 -3903 29 60 0 0 chr1 76854052 76854102 -165810251 + AT_rich Low_complexity Low_complexity 1 50 0 1954 151 0 10 chr1 76854120 76854440 -165809913 + AluSx SINE Alu 1 312 0 380 284 31 52 chr1 76854744 76854973 -165809380 + L1M4c LINE L1 2924 3147 -3235 23 0 0 0 chr1 76854974 76854997 -165809356 + AT_rich Low_complexity Low_complexity 1 23 0 235 409 0 0 chr1 76855069 76855157 -165809196 - L2 LINE L2 -44 3228 3141 214 147 0 0 chr1 76855166 76855200 -165809153 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 297 293 179 19 chr1 76855470 76855576 -165808777 - L2 LINE L2 -8 3264 3142 321 363 43 46 chr1 76855698 76856001 -165808352 - L2 LINE L2 -348 2966 2665 230 321 12 12 chr1 76856589 76856673 -165807680 - L2 LINE L2 -1409 1905 1822 639 164 30 0 chr1 76856689 76856823 -165807530 + L1MA4 LINE L1 6161 6298 -2 298 231 39 0 chr1 76856973 76857051 -165807302 - L1M4 LINE L1 -906 5240 5160 25 31 0 0 chr1 76857074 76857106 -165807247 + AT_rich Low_complexity Low_complexity 1 32 0 318 308 68 8 chr1 76857131 76857248 -165807105 + L1MC/D LINE L1 5317 5440 -2345 23 54 0 0 chr1 76858024 76858061 -165806292 + AT_rich Low_complexity Low_complexity 1 37 0 4425 238 47 12 chr1 76858540 76859815 -165804538 - L1M4 LINE L1 -801 5345 4026 344 298 23 41 chr1 76859924 76860095 -165804258 + L1M4 LINE L1 4906 5073 -1073 7118 51 0 10 chr1 76860123 76861276 -165803077 + L1PA5 LINE L1 5003 6146 -8 23 33 0 0 chr1 76861281 76861311 -165803042 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr1 76861444 76861464 -165802889 + (T)n Simple_repeat Simple_repeat 1 20 0 1478 247 138 55 chr1 76861728 76862810 -165801543 + L1ME3 LINE L1 2433 3604 -2542 1255 278 70 38 chr1 76862790 76863991 -165800362 + L1ME3 LINE L1 4586 5828 -334 * 2105 103 4 0 chr1 76864018 76864299 -165800054 + AluSp SINE Alu 20 301 -12 2240 106 3 6 chr1 76866503 76866815 -165797538 + AluSp SINE Alu 1 311 -2 371 284 101 7 chr1 76866891 76867039 -165797314 + MIR SINE MIR 87 248 -14 392 322 73 9 chr1 76867204 76867428 -165796925 + MLT1J1 LTR MaLR 3 243 -207 3736 210 178 21 chr1 76867428 76868680 -165795673 - Charlie1 DNA MER1_type 0 2761 1 363 213 32 11 chr1 76868762 76868856 -165795497 + MLT1J2 LTR MaLR 332 427 -23 225 0 0 0 chr1 76870276 76870301 -165794052 + (T)n Simple_repeat Simple_repeat 1 25 0 374 286 10 0 chr1 76870422 76870520 -165793833 - L2 LINE L2 -8 3305 3207 21 36 0 0 chr1 76871314 76871342 -165793011 + AT_rich Low_complexity Low_complexity 1 28 0 262 269 9 24 chr1 76872506 76872613 -165791740 - MLT1J LTR MaLR -309 179 34 21 36 0 0 chr1 76873856 76873884 -165790469 + AT_rich Low_complexity Low_complexity 1 28 0 334 353 106 53 chr1 76874140 76874388 -165789965 - L2 LINE L2 0 3272 2992 1462 180 29 76 chr1 76874388 76874771 -165789582 + MLT1A1 LTR MaLR 1 365 0 334 353 106 53 chr1 76874771 76874936 -165789417 - L2 LINE L2 -280 2992 2837 * 404 267 25 106 chr1 76874933 76875094 -165789259 + MIR SINE MIR 56 203 -59 23 0 0 0 chr1 76875508 76875531 -165788822 + AT_rich Low_complexity Low_complexity 1 23 0 2798 234 17 19 chr1 76875809 76876440 -165787913 - MER82 DNA MER2_type 0 653 24 23 0 0 0 chr1 76876508 76876531 -165787822 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr1 76876839 76876873 -165787480 + AT_rich Low_complexity Low_complexity 1 34 0 26 82 0 0 chr1 76877177 76877238 -165787115 + AT_rich Low_complexity Low_complexity 1 61 0 623 281 58 12 chr1 76877477 76877719 -165786634 + L1MC5 LINE L1 7249 7501 -460 467 261 35 50 chr1 76877728 76877927 -165786426 + L1MC5 LINE L1 7700 7895 -66 225 371 49 7 chr1 76878156 76878299 -165786054 + MIR SINE MIR 10 158 -104 21 71 0 0 chr1 76878417 76878459 -165785894 + AT_rich Low_complexity Low_complexity 1 42 0 393 141 0 0 chr1 76878910 76878981 -165785372 + (TA)n Simple_repeat Simple_repeat 2 72 0 510 31 0 0 chr1 76878981 76879045 -165785308 + (GA)n Simple_repeat Simple_repeat 2 65 0 227 414 10 0 chr1 76879100 76879204 -165785149 + L2 LINE L2 3192 3296 -17 216 0 0 0 chr1 76882018 76882042 -165782311 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 185 301 36 36 chr1 76882313 76882396 -165781957 + L2 LINE L2 3227 3309 -4 2735 91 0 3 chr1 76882444 76882807 -165781546 - THE1B LTR MaLR -2 362 1 21 0 0 0 chr1 76883875 76883896 -165780457 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 76884039 76884071 -165780282 + AT_rich Low_complexity Low_complexity 1 32 0 1242 268 107 9 chr1 76884546 76884779 -165779574 + MLT1C LTR MaLR 1 210 -257 1504 185 103 16 chr1 76884779 76885098 -165779255 - MER7A DNA MER2_type -1 345 1 1242 268 107 9 chr1 76885098 76885286 -165779067 + MLT1C LTR MaLR 210 463 -4 190 332 134 28 chr1 76885672 76885821 -165778532 + MIR SINE MIR 35 144 -64 3707 187 20 18 chr1 76886237 76886733 -165777620 + L1MC3 LINE L1 6256 6755 -1030 2264 102 0 13 chr1 76886733 76887048 -165777305 + AluSq SINE Alu 1 311 -2 3707 187 20 18 chr1 76887048 76887316 -165777037 + L1MC3 LINE L1 6755 7021 -764 2087 168 40 28 chr1 76887306 76887781 -165776572 + L1MC3 LINE L1 6137 6344 0 * 284 311 22 0 chr1 76887805 76887895 -165776458 - MLT1L LTR MaLR -94 521 430 477 301 115 35 chr1 76887950 76888176 -165776177 - MLT1L LTR MaLR -367 248 5 236 333 72 0 chr1 76888627 76888738 -165775615 + MIR SINE MIR 49 167 -95 1663 166 107 9 chr1 76889119 76889469 -165774884 + MLT2D LTR ERVL 1 481 -39 213 333 14 0 chr1 76890181 76890250 -165774103 - L2 LINE L2 0 3272 3203 459 349 65 11 chr1 76890401 76890619 -165773734 - MIR SINE MIR -13 249 16 522 332 79 9 chr1 76891475 76891689 -165772664 + MIR SINE MIR 1 229 -33 759 284 4 44 chr1 76892325 76892402 -165771951 + MIR SINE MIR 33 112 -150 2006 79 16 0 chr1 76892402 76892685 -165771668 - AluSc SINE Alu 0 311 25 759 284 4 44 chr1 76892685 76892831 -165771522 + MIR SINE MIR 112 248 -14 280 317 44 44 chr1 76892995 76893178 -165771175 - L2 LINE L2 -552 2762 2580 265 306 24 59 chr1 76893298 76893468 -165770885 + MARNA DNA Mariner 393 556 -30 21 0 0 0 chr1 76893722 76893743 -165770610 + AT_rich Low_complexity Low_complexity 1 21 0 252 287 32 21 chr1 76893816 76893910 -165770443 - MIR SINE MIR -109 153 59 300 345 55 45 chr1 76894931 76895131 -165769222 + MIR SINE MIR 30 231 -31 29 28 0 0 chr1 76895566 76895602 -165768751 + AT_rich Low_complexity Low_complexity 1 36 0 222 248 171 60 chr1 76895790 76895907 -165768446 + L2 LINE L2 3184 3313 0 255 242 61 20 chr1 76897479 76897578 -165766775 - MIR SINE MIR -44 218 116 441 36 0 0 chr1 76898678 76898733 -165765620 + (CA)n Simple_repeat Simple_repeat 1 55 0 243 88 0 0 chr1 76898829 76898863 -165765490 + (CA)n Simple_repeat Simple_repeat 1 34 0 300 391 31 21 chr1 76899139 76899331 -165765022 - MIR SINE MIR -66 196 3 219 298 0 18 chr1 76899732 76899789 -165764564 - L2 LINE L2 -223 3049 2994 1615 129 62 96 chr1 76899898 76900285 -165764068 - THE1C LTR MaLR -1 374 1 23 0 0 0 chr1 76901686 76901709 -165762644 + AT_rich Low_complexity Low_complexity 1 23 0 223 292 0 62 chr1 76902571 76902667 -165761686 + MIR SINE MIR 163 252 -10 283 382 73 21 chr1 76902869 76903210 -165761143 - L2 LINE L2 -226 3046 2690 324 344 73 13 chr1 76903245 76903396 -165760957 - MIR SINE MIR -54 208 49 24 91 0 0 chr1 76904528 76904594 -165759759 + AT_rich Low_complexity Low_complexity 1 66 0 32 0 0 0 chr1 76904747 76904779 -165759574 + AT_rich Low_complexity Low_complexity 1 32 0 541 291 37 65 chr1 76905263 76905586 -165758767 + MLT1I LTR MaLR 79 392 -17 884 335 92 55 chr1 76906304 76907167 -165757186 + L2 LINE L2 2376 3272 0 30 77 0 0 chr1 76907460 76907525 -165756828 + AT_rich Low_complexity Low_complexity 1 65 0 364 271 158 66 chr1 76907684 76907915 -165756438 - MLT1I LTR MaLR -10 399 122 759 156 0 15 chr1 76907915 76908050 -165756303 + FLAM_C SINE Alu 1 133 0 364 271 158 66 chr1 76908050 76908180 -165756173 - MLT1I LTR MaLR -287 122 5 221 56 0 28 chr1 76908885 76908921 -165755432 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7506 21 4 0 chr1 76908921 76909843 -165754510 - L1PA3 LINE L1 -24 6131 5206 5553 30 0 0 chr1 76909841 76910509 -165753844 + L1PA3 LINE L1 4526 5193 -953 * 1165 195 64 45 chr1 76911609 76911876 -165752477 - AluJo SINE Alu -18 294 23 423 284 110 19 chr1 76912609 76912764 -165751589 + MIR3 SINE MIR 29 197 -11 276 309 64 58 chr1 76914567 76914772 -165749581 + MIR SINE MIR 21 224 -38 22 35 0 0 chr1 76915553 76915582 -165748771 + AT_rich Low_complexity Low_complexity 1 29 0 222 0 79 0 chr1 76917151 76917189 -165747164 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 207 0 0 0 chr1 76917512 76917535 -165746818 + (TTA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr1 76917920 76917942 -165746411 + (T)n Simple_repeat Simple_repeat 1 22 0 219 36 0 0 chr1 76918755 76918783 -165745570 + (TG)n Simple_repeat Simple_repeat 2 29 0 369 291 121 85 chr1 76919559 76919957 -165744396 - L1M2 LINE L1 -5863 986 575 396 0 0 0 chr1 76920787 76920831 -165743522 + (CA)n Simple_repeat Simple_repeat 2 45 0 2291 79 0 13 chr1 76920950 76921254 -165743099 - AluSq SINE Alu -13 300 1 184 290 65 11 chr1 76922032 76922125 -165742228 - MIR SINE MIR -51 211 114 818 299 120 19 chr1 76923823 76924389 -165739964 - L1ME3A LINE L1 -240 5930 5308 380 265 29 49 chr1 76924518 76924722 -165739631 - L1ME3A LINE L1 -1007 5139 4940 7779 137 8 4 chr1 76925394 76925883 -165738470 - L1PA10 LINE L1 -6 6162 5677 2838 9 0 3 chr1 76925883 76926202 -165738151 - AluYb8 SINE Alu 0 318 1 2098 131 0 0 chr1 76926207 76926498 -165737855 - AluSg SINE Alu -19 291 1 7779 137 8 4 chr1 76926498 76928089 -165736264 - L1PA10 LINE L1 -494 5674 4086 11308 163 14 6 chr1 76928089 76930150 -165734203 + L1P LINE L1 1670 3746 -2400 1117 289 134 39 chr1 76930280 76931026 -165733327 - L1MEd LINE L1 -5296 823 7 21 0 0 0 chr1 76931658 76931679 -165732674 + AT_rich Low_complexity Low_complexity 1 21 0 325 298 60 37 chr1 76931872 76932233 -165732120 - L1MC4a LINE L1 -207 5914 5542 23 0 0 0 chr1 76933759 76933782 -165730571 + AT_rich Low_complexity Low_complexity 1 23 0 3286 148 9 59 chr1 76935699 76936343 -165728010 + LTR9 LTR ERV1 1 612 0 579 338 55 13 chr1 76936760 76936997 -165727356 + MIR SINE MIR 16 262 0 403 271 123 25 chr1 76937087 76937209 -165727144 + L2 LINE L2 3139 3272 0 1023 311 78 35 chr1 76937685 76938173 -165726180 + L2 LINE L2 2805 3313 0 193 286 16 16 chr1 76938206 76938269 -165726084 - MIR SINE MIR -50 212 150 221 431 15 0 chr1 76938822 76938959 -165725394 - L2 LINE L2 0 3272 3134 3263 122 40 23 chr1 76939300 76939818 -165724535 - MER1A DNA MER1_type 0 527 1 229 316 25 25 chr1 76940545 76940624 -165723729 + MLT1L LTR MaLR 4 82 -533 225 94 0 0 chr1 76940799 76940831 -165723522 + (A)n Simple_repeat Simple_repeat 1 32 0 238 246 64 36 chr1 76940837 76940947 -165723406 + MLT1L LTR MaLR 293 405 -210 540 320 11 6 chr1 76941602 76941783 -165722570 - MLT1L LTR MaLR 0 615 434 1553 176 18 89 chr1 76941947 76942192 -165722161 + MLT1A1 LTR MaLR 1 209 -156 1343 239 49 21 chr1 76942192 76942577 -165721776 - MSTD LTR MaLR 0 396 1 1553 176 18 89 chr1 76942577 76942724 -165721629 + MLT1A1 LTR MaLR 209 365 0 697 287 128 4 chr1 76943088 76943353 -165721000 - MLT1I LTR MaLR -58 351 54 32 26 0 0 chr1 76943559 76943598 -165720755 + AT_rich Low_complexity Low_complexity 1 39 0 5678 198 44 46 chr1 76943684 76943718 -165720635 - Charlie1a DNA MER1_type -1306 1455 1422 1619 169 36 23 chr1 76943718 76944020 -165720333 - AluJo SINE Alu -6 306 1 5678 198 44 46 chr1 76944020 76944411 -165719942 - Charlie1a DNA MER1_type -1339 1422 1032 2243 115 0 0 chr1 76944411 76944723 -165719630 - AluSq SINE Alu 0 313 2 5678 198 44 46 chr1 76944723 76945754 -165718599 - Charlie1a DNA MER1_type -1729 1032 1 268 374 99 22 chr1 76946318 76946642 -165717711 - L2 LINE L2 -924 2390 2042 955 226 77 42 chr1 76946647 76946957 -165717396 + MLT2D LTR ERVL 94 414 0 567 344 106 31 chr1 76948350 76949227 -165715126 - L2 LINE L2 -1288 2026 1084 207 0 0 0 chr1 76949413 76949436 -165714917 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 369 282 118 48 chr1 76949698 76950155 -165714198 - L1M4 LINE L1 -1399 4747 4259 4339 33 0 0 chr1 76950557 76951071 -165713282 - L1PA5 LINE L1 0 6154 5641 1790 32 0 0 chr1 76951072 76951290 -165713063 + L1P LINE L1 2859 3076 -3070 1638 176 0 43 chr1 76951373 76951697 -165712656 - AluJb SINE Alu 0 312 3 1990 157 53 53 chr1 76952034 76952466 -165711887 + MSTB1 LTR MaLR 1 432 0 265 282 212 17 chr1 76952492 76952733 -165711620 - L1MEd LINE L1 -3436 2693 2406 1451 163 143 60 chr1 76952754 76953207 -165711146 + LTR54B LTR ERV1 1 491 -7 274 280 49 7 chr1 76953210 76953353 -165711000 - L1MEd LINE L1 -3761 2368 2220 318 191 0 0 chr1 76953425 76953488 -165710865 - L1PB4 LINE L1 -5 6151 6089 262 335 83 30 chr1 76953982 76954212 -165710141 - HAL1 LINE L1 -809 1698 1457 308 289 22 0 chr1 76954234 76954324 -165710029 + MIR SINE MIR 171 262 0 218 79 0 26 chr1 76954495 76954533 -165709820 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 228 339 25 25 chr1 76954769 76954887 -165709466 - L1MEd LINE L1 -5758 361 244 267 259 106 12 chr1 76955288 76955373 -165708980 - MIR SINE MIR -86 176 84 261 183 0 0 chr1 76955971 76956031 -165708322 + (TATG)n Simple_repeat Simple_repeat 2 61 0 268 279 0 0 chr1 76956175 76956243 -165708110 - MIR3 SINE MIR -16 192 125 245 29 29 0 chr1 76956674 76956708 -165707645 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 507 271 271 0 chr1 76956717 76956916 -165707437 + MIR SINE MIR 7 259 -3 657 178 126 40 chr1 76956993 76957167 -165707186 + MER65A-int LTR ERV1 3534 3722 -2876 2221 215 101 73 chr1 76957260 76958600 -165705753 + MER65A-int LTR ERV1 2992 5094 -1237 373 171 23 68 chr1 76958567 76958655 -165705698 + MER65A-int LTR ERV1 3884 3967 -969 * 2177 246 58 4 chr1 76958710 76959211 -165705142 + MER65A-int LTR ERV1 3605 4132 -739 2828 219 31 7 chr1 76959211 76959831 -165704522 + MER65A-int LTR ERV1 4237 4871 0 2276 131 34 82 chr1 76959833 76960016 -165704337 + MER65A LTR ERV1 3 193 -252 1722 107 85 85 chr1 76960016 76960391 -165703962 - THE1C LTR MaLR 0 375 1 2276 131 34 82 chr1 76960391 76960672 -165703681 + MER65A LTR ERV1 193 445 0 522 83 0 0 chr1 76961139 76961211 -165703142 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 2340 76 3 16 chr1 76961214 76961529 -165702824 - AluY SINE Alu 0 311 1 274 236 0 0 chr1 76962190 76962245 -165702108 + L2 LINE L2 3259 3313 0 225 222 22 0 chr1 76962515 76962560 -165701793 + Charlie8 DNA MER1_type 194 239 -2178 1264 208 20 8 chr1 76962688 76962938 -165701415 - MER21B LTR ERV1 -125 738 486 3897 172 40 6 chr1 76962939 76963637 -165700716 + MER50 LTR ERV1 1 722 -12 609 292 83 57 chr1 76963684 76964139 -165700214 - MER21B LTR ERV1 -396 467 1 2289 87 10 6 chr1 76965112 76965423 -165698930 + AluSp SINE Alu 1 312 -1 971 161 18 6 chr1 76965423 76965591 -165698762 + AluSq SINE Alu 134 303 -10 427 244 186 40 chr1 76966071 76966165 -165698188 - HAL1 LINE L1 -109 2398 2319 486 222 63 16 chr1 76966165 76966291 -165698062 - FLAM_A SINE Alu 0 133 2 427 244 186 40 chr1 76966291 76966471 -165697882 - HAL1 LINE L1 -188 2319 2084 2182 156 20 65 chr1 76966471 76966919 -165697434 + Tigger2a DNA MER2_type 2 429 -5 1605 267 82 57 chr1 76966945 76967956 -165696397 - HAL1 LINE L1 -447 2060 1025 300 48 0 24 chr1 76969040 76969082 -165695271 - MLT2A1 LTR ERVL 0 453 413 900 111 0 0 chr1 76969083 76969218 -165695135 + (TA)n Simple_repeat Simple_repeat 2 136 0 279 71 0 0 chr1 76969218 76969260 -165695093 + (CA)n Simple_repeat Simple_repeat 1 42 0 2823 80 31 5 chr1 76969277 76969665 -165694688 - MLT2A1 LTR ERVL -44 400 3 489 273 121 54 chr1 76969770 76970067 -165694286 + MLT1J LTR MaLR 3 319 -192 355 308 70 131 chr1 76970385 76970599 -165693754 + L2 LINE L2 2865 3065 -248 2415 38 3 0 chr1 76970600 76970889 -165693464 - AluY SINE Alu -21 290 1 2127 132 7 0 chr1 76971443 76971753 -165692600 + AluSx SINE Alu 1 312 0 444 303 74 13 chr1 76972208 76972439 -165691914 - HAL1b LINE L1 -740 608 364 43 71 0 0 chr1 76972453 76972538 -165691815 + AT_rich Low_complexity Low_complexity 1 85 0 284 257 29 58 chr1 76972617 76972788 -165691565 - HAL1b LINE L1 -1094 254 89 366 264 19 0 chr1 76974149 76974255 -165690098 + Charlie7 DNA MER1_type 3 110 -2502 2103 119 10 13 chr1 76974327 76974630 -165689723 + AluSx SINE Alu 1 302 -10 4857 254 44 29 chr1 76974727 76976551 -165687802 - L1M4 LINE L1 -1255 4891 3045 991 271 63 44 chr1 76976947 76977360 -165686993 - L1MDa LINE L1 -6117 423 3 691 151 0 50 chr1 76977368 76977507 -165686846 - FLAM_C SINE Alu 0 133 2 187 349 68 77 chr1 76977518 76977870 -165686483 + L2 LINE L2 2917 3265 -7 1643 149 3 86 chr1 76978049 76978184 -165686169 + AluSx SINE Alu 1 146 -166 784 84 0 0 chr1 76978184 76978291 -165686062 + L1PA8 LINE L1 6066 6172 0 1643 149 3 86 chr1 76978291 76978312 -165686041 + AluSx SINE Alu 146 167 -145 2612 29 3 3 chr1 76978312 76978618 -165685735 + AluY SINE Alu 1 306 -5 1643 149 3 86 chr1 76978618 76978775 -165685578 + AluSx SINE Alu 167 289 -23 27 62 0 0 chr1 76979073 76979121 -165685232 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 76979726 76979748 -165684605 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 76980111 76980135 -165684218 + AT_rich Low_complexity Low_complexity 1 24 0 497 335 110 4 chr1 76981166 76981402 -165682951 - MIR SINE MIR 0 262 2 242 353 17 0 chr1 76982776 76982892 -165681461 + MLT1J LTR MaLR 137 254 -257 183 42 0 0 chr1 76983033 76983057 -165681296 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr1 76983305 76983333 -165681020 + AT_rich Low_complexity Low_complexity 1 28 0 1595 323 122 85 chr1 76983695 76984483 -165679870 + L2 LINE L2 619 1376 -1937 775 173 93 6 chr1 76984483 76984645 -165679708 - AluJo SINE Alu -44 268 93 1595 323 122 85 chr1 76984645 76986040 -165678313 + L2 LINE L2 1376 3052 -261 2055 128 3 3 chr1 76987054 76987351 -165677002 - AluSx SINE Alu -12 300 4 21 0 0 0 chr1 76987474 76987495 -165676858 + AT_rich Low_complexity Low_complexity 1 21 0 1891 100 89 4 chr1 76987732 76988003 -165676350 + AluSc SINE Alu 1 294 -15 324 279 234 0 chr1 76988155 76988264 -165676089 + MLT1F1 LTR MaLR 182 264 -303 1367 226 80 98 chr1 76988264 76988813 -165675540 + MLT1F LTR MaLR 4 542 0 324 279 234 0 chr1 76988813 76988861 -165675492 + MLT1F1 LTR MaLR 264 376 -191 241 297 0 31 chr1 76988855 76988919 -165675434 + MLT1H1 LTR MaLR 448 509 -86 * 330 229 72 0 chr1 76989000 76989083 -165675270 + MLT1H1 LTR MaLR 467 555 0 253 370 38 54 chr1 76989085 76989269 -165675084 - L2 LINE L2 -73 3199 3019 205 205 0 0 chr1 76990297 76990336 -165674017 + T-rich Low_complexity Low_complexity 1 39 0 520 337 88 12 chr1 76990588 76990837 -165673516 - MLT1J LTR MaLR -176 335 68 269 224 0 71 chr1 76991859 76991957 -165672396 + A-rich Low_complexity Low_complexity 3 93 0 285 254 48 0 chr1 76992197 76992260 -165672093 - L2 LINE L2 -1 3312 3247 1470 195 20 96 chr1 76992660 76993162 -165671191 + MLT2C2 LTR ERVL 1 464 0 266 250 0 44 chr1 76994205 76994273 -165670080 + L2 LINE L2 3248 3312 -1 203 170 43 0 chr1 76995045 76995092 -165669261 - MIR SINE MIR -122 140 92 5183 203 24 34 chr1 76995736 76996580 -165667773 - L1MC1 LINE L1 -6 6607 5756 180 0 0 0 chr1 76996580 76996600 -165667753 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1973 87 8 0 chr1 76996606 76996859 -165667494 - AluSc SINE Alu -17 292 38 5183 203 24 34 chr1 76996859 76997766 -165666587 - L1MC1 LINE L1 -862 5751 4869 * 10366 167 77 58 chr1 76997765 76999838 -165664515 - L1MC1 LINE L1 -3947 2479 478 7570 48 0 3 chr1 76999838 77001540 -165662813 + L1PA5 LINE L1 4437 6138 -16 432 51 0 0 chr1 77001540 77001599 -165662754 + (TA)n Simple_repeat Simple_repeat 1 59 0 7570 48 0 3 chr1 77001599 77001616 -165662737 + L1PA5 LINE L1 6138 6154 0 10366 167 77 58 chr1 77001616 77002099 -165662254 - L1MC1 LINE L1 -5948 478 6 356 296 43 43 chr1 77002623 77002785 -165661568 - MER5A DNA MER1_type -15 174 13 212 350 52 10 chr1 77004121 77004218 -165660135 - L2 LINE L2 -38 3275 3175 300 335 88 31 chr1 77004363 77004557 -165659796 - L2 LINE L2 -346 2968 2764 331 376 114 10 chr1 77005262 77005464 -165658889 + L3 LINE CR1 1271 1493 -84 22 0 0 0 chr1 77006088 77006110 -165658243 + AT_rich Low_complexity Low_complexity 1 22 0 379 316 97 71 chr1 77007150 77007584 -165656769 + L1ME4a LINE L1 5392 5836 -285 344 279 56 34 chr1 77008443 77008676 -165655677 + L1ME1 LINE L1 682 919 -5286 * 1319 295 52 32 chr1 77008671 77009510 -165654843 + L1ME1 LINE L1 1503 2334 -3881 2625 7 0 10 chr1 77009510 77009808 -165654545 + AluYa5 SINE Alu 1 295 -16 1319 295 52 32 chr1 77009808 77010002 -165654351 + L1ME1 LINE L1 2334 2523 -3692 911 158 42 12 chr1 77010025 77010190 -165654163 + MER34 LTR ERV1 373 542 0 1157 259 77 49 chr1 77010211 77010806 -165653547 + L1M4 LINE L1 4511 5122 -1024 * 2852 135 29 2 chr1 77010805 77011331 -165653022 - L1M1 LINE L1 -4785 2780 2241 504 296 126 38 chr1 77061332 77062682 -165601671 + L1ME1 LINE L1 4186 5672 -567 257 200 64 8 chr1 77063290 77063415 -165600938 + (TA)n Simple_repeat Simple_repeat 2 133 0 491 71 0 29 chr1 77063418 77063488 -165600865 - MLT2B2 LTR ERVL -445 70 3 28 29 0 0 chr1 77063501 77063536 -165600817 + AT_rich Low_complexity Low_complexity 1 35 0 261 164 18 0 chr1 77063551 77063606 -165600747 + MLT2B1 LTR ERVL 465 520 0 279 0 0 0 chr1 77063665 77063696 -165600657 + (TA)n Simple_repeat Simple_repeat 2 32 0 2405 180 20 16 chr1 77063706 77064145 -165600208 - MLT2B2 LTR ERVL -72 443 3 27 29 0 0 chr1 77064188 77064222 -165600131 + AT_rich Low_complexity Low_complexity 1 34 0 196 304 0 0 chr1 77064596 77064652 -165599701 + L2 LINE L2 3258 3313 0 387 157 0 0 chr1 77065678 77065748 -165598605 + CT-rich Low_complexity Low_complexity 2 71 0 228 218 13 51 chr1 77065754 77065832 -165598521 + T-rich Low_complexity Low_complexity 4 78 0 32837 70 5 2 chr1 77066058 77071243 -165593110 + L1PA5 LINE L1 952 6154 0 245 286 0 14 chr1 77071297 77071367 -165592986 - MLT1K LTR MaLR -8 580 512 206 323 30 61 chr1 77071674 77071838 -165592515 - L2 LINE L2 -215 3057 2899 1104 260 24 24 chr1 77072384 77072719 -165591634 + L1ME1 LINE L1 5894 6228 -7 2395 79 0 10 chr1 77074437 77074741 -165589612 - AluY SINE Alu -10 301 1 209 217 0 0 chr1 77074929 77074975 -165589378 + (TA)n Simple_repeat Simple_repeat 2 47 0 808 234 63 0 chr1 77075643 77075801 -165588552 - MER96 DNA MER1_type? 0 175 8 2207 153 28 14 chr1 77075901 77076260 -165588093 + THE1B LTR MaLR 1 364 0 8226 114 26 24 chr1 77076260 77076530 -165587823 + THE1B-int LTR MaLR 1 269 -1311 2193 123 0 10 chr1 77076530 77076839 -165587514 - AluSx SINE Alu -6 306 1 8226 114 26 24 chr1 77076839 77078192 -165586161 + THE1B-int LTR MaLR 269 1580 0 2253 138 36 14 chr1 77078192 77078548 -165585805 + THE1B LTR MaLR 1 364 0 504 326 50 44 chr1 77079239 77079645 -165584708 - L2 LINE L2 -133 3180 2780 300 341 7 29 chr1 77079657 77079795 -165584558 + L1M4 LINE L1 3935 4069 -2077 416 104 15 0 chr1 77079897 77079964 -165584389 + MSTD LTR MaLR 329 396 0 1051 73 5 0 chr1 77080275 77080421 -165583932 + L1PA6 LINE L1 5825 5976 -178 1641 172 19 101 chr1 77080749 77081174 -165583179 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr1 77082159 77082180 -165582173 + AT_rich Low_complexity Low_complexity 1 21 0 356 301 171 74 chr1 77082194 77082410 -165581943 - MIR SINE MIR -13 249 13 366 302 22 29 chr1 77083945 77084084 -165580269 - MIR SINE MIR -4 258 121 28 0 0 0 chr1 77084177 77084205 -165580148 + AT_rich Low_complexity Low_complexity 1 28 0 410 289 209 4 chr1 77084287 77084512 -165579841 - Charlie8 DNA MER1_type -2146 271 1 2150 77 0 4 chr1 77086319 77086591 -165577762 - AluY SINE Alu -40 271 1 243 443 16 10 chr1 77087301 77087493 -165576860 + L2 LINE L2 2869 3061 -211 26 30 0 0 chr1 77089705 77089738 -165574615 + AT_rich Low_complexity Low_complexity 1 33 0 352 284 165 16 chr1 77091128 77091255 -165573098 + L2 LINE L2 3167 3312 -1 362 325 59 35 chr1 77091980 77092235 -165572118 - MIR SINE MIR 0 262 2 290 114 0 0 chr1 77092668 77092712 -165571641 - L1PA13 LINE L1 -19 6144 6101 * 2469 92 14 0 chr1 77092710 77093056 -165571297 + L1PA12 LINE L1 5734 6084 -84 22 0 0 0 chr1 77093491 77093513 -165570840 + AT_rich Low_complexity Low_complexity 1 22 0 371 305 86 43 chr1 77093544 77093754 -165570599 - L3 LINE CR1 -3 1574 1356 252 337 35 12 chr1 77093865 77093951 -165570402 - L2 LINE L2 -32 3281 3194 633 280 91 88 chr1 77094157 77094575 -165569778 - L2 LINE L2 -715 2599 2181 921 289 26 19 chr1 77094575 77094845 -165569508 - L2 LINE L2 -1919 1395 1124 264 220 73 46 chr1 77095595 77095704 -165568649 - MIR SINE MIR -1 261 150 328 336 62 23 chr1 77095859 77095987 -165568366 - MIR SINE MIR -56 152 20 226 220 0 0 chr1 77097095 77097145 -165567208 - L1M1 LINE L1 -748 5555 5506 298 285 61 43 chr1 77097319 77097629 -165566724 - L1M4 LINE L1 -743 5403 5038 1449 75 9 38 chr1 77097629 77097841 -165566512 - L1PA12 LINE L1 0 6168 5963 298 285 61 43 chr1 77097841 77098058 -165566295 - L1M4 LINE L1 -1108 5038 4826 2833 10 0 0 chr1 77098093 77098402 -165565951 - AluYa5 SINE Alu -2 309 1 455 344 16 16 chr1 77098483 77098672 -165565681 - MIR3 SINE MIR -3 205 17 1826 112 11 4 chr1 77098850 77099173 -165565180 - AluSc SINE Alu 0 363 39 201 129 0 0 chr1 77099331 77099362 -165564991 + (TG)n Simple_repeat Simple_repeat 2 32 0 244 250 28 14 chr1 77100141 77100213 -165564140 + MER94 DNA DNA 1 73 -61 742 287 6 0 chr1 77100357 77100524 -165563829 + MER45A DNA AcHobo 1 168 -10 330 340 81 24 chr1 77100565 77100812 -165563541 + L3 LINE CR1 1134 1394 -183 235 280 140 0 chr1 77101266 77101373 -165562980 - MIR SINE MIR -75 187 66 270 239 57 45 chr1 77101395 77101483 -165562870 - L2 LINE L2 0 3313 3225 1549 191 19 62 chr1 77101498 77101869 -165562484 - MLT1A1 LTR MaLR 0 365 11 2570 201 49 2 chr1 77101883 77102390 -165561963 - MLT1A1-int LTR MaLR 0 1735 1205 2185 255 13 34 chr1 77102377 77103046 -165561307 - MLT1A1-int LTR MaLR -641 1094 347 * 2312 179 9 9 chr1 77103065 77103494 -165560859 - MER65A LTR ERV1 -16 429 1 1359 171 23 12 chr1 77103494 77103751 -165560602 - MLT1A1-int LTR MaLR -1250 485 226 368 143 0 16 chr1 77103733 77103796 -165560557 - MLT1A1-int LTR MaLR -1304 67 6 * 1459 221 44 18 chr1 77103802 77104142 -165560211 - MLT1A1 LTR MaLR 0 365 17 540 56 0 0 chr1 77104368 77104440 -165559913 + (TA)n Simple_repeat Simple_repeat 2 73 0 194 261 108 31 chr1 77104578 77104643 -165559710 - L2 LINE L2 -211 3061 2992 31 0 0 0 chr1 77104746 77104777 -165559576 + AT_rich Low_complexity Low_complexity 1 31 0 220 286 63 16 chr1 77105035 77105098 -165559255 + L2 LINE L2 3207 3272 0 325 333 152 0 chr1 77105142 77105274 -165559079 - L2 LINE L2 -5 3267 3116 2544 183 25 45 chr1 77105873 77106404 -165557949 - MLT2B1 LTR ERVL 0 520 1 1003 216 81 70 chr1 77106481 77106974 -165557379 + MER39 LTR ERV1 1 565 0 223 188 14 14 chr1 77107756 77107825 -165556528 + GA-rich Low_complexity Low_complexity 1 69 0 180 329 21 63 chr1 77107973 77108116 -165556237 - L2 LINE L2 -1302 2012 1876 583 240 0 0 chr1 77108832 77108957 -165555396 + MIR SINE MIR 126 250 -12 220 271 41 66 chr1 77109330 77109452 -165554901 + MIR SINE MIR 70 188 -74 23 0 0 0 chr1 77109853 77109876 -165554477 + AT_rich Low_complexity Low_complexity 1 23 0 596 301 117 5 chr1 77109883 77110096 -165554257 - MIR SINE MIR -24 238 2 437 342 68 11 chr1 77110388 77110521 -165553832 + MIR SINE MIR 20 169 -93 369 0 0 0 chr1 77110521 77110562 -165553791 + (CA)n Simple_repeat Simple_repeat 2 42 0 437 342 68 11 chr1 77110562 77110618 -165553735 + MIR SINE MIR 169 220 -42 1402 223 22 11 chr1 77111125 77111403 -165552950 - AluJo SINE Alu -31 281 1 210 420 0 0 chr1 77111422 77111510 -165552843 + L2 LINE L2 3182 3269 -3 807 209 83 77 chr1 77111799 77112138 -165552215 + MER2 DNA MER2_type 1 341 -3 1941 167 7 83 chr1 77113403 77113839 -165550514 - MER57A LTR ERV1 0 403 1 593 121 0 50 chr1 77114068 77114167 -165550186 + FLAM_A SINE Alu 33 126 -16 194 61 0 30 chr1 77114181 77114214 -165550139 + (TTAAA)n Simple_repeat Simple_repeat 4 35 0 22 0 0 0 chr1 77114729 77114751 -165549602 + AT_rich Low_complexity Low_complexity 1 22 0 268 314 23 0 chr1 77115050 77115136 -165549217 - L2 LINE L2 -5 3267 3180 1072 244 6 4 chr1 77115206 77115432 -165548921 + MER8 DNA MER2_type 13 239 0 243 304 38 6 chr1 77115471 77115604 -165548749 - L2 LINE L2 -177 3136 2998 22 35 0 0 chr1 77115635 77115664 -165548689 + AT_rich Low_complexity Low_complexity 1 29 0 2357 66 0 40 chr1 77115701 77116005 -165548348 + AluY SINE Alu 1 292 -19 205 304 80 0 chr1 77116603 77116715 -165547638 + MIR SINE MIR 101 221 -41 21 36 0 0 chr1 77116818 77116846 -165547507 + AT_rich Low_complexity Low_complexity 1 28 0 1308 181 89 43 chr1 77117546 77117895 -165546458 + MER93b LTR ERV1 7 371 -2 222 37 0 0 chr1 77118285 77118312 -165546041 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 251 294 98 20 chr1 77118719 77118821 -165545532 - MIR SINE MIR -76 132 23 314 295 96 19 chr1 77119638 77119794 -165544559 + MIR SINE MIR 2 169 -93 264 350 21 14 chr1 77120362 77120502 -165543851 + MIR SINE MIR 122 262 0 543 118 140 0 chr1 77120623 77120716 -165543637 - L1MA4 LINE L1 -22 6278 6173 43 35 0 0 chr1 77121624 77121681 -165542672 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr1 77122280 77122302 -165542051 + AT_rich Low_complexity Low_complexity 1 22 0 244 363 18 35 chr1 77122410 77122523 -165541830 + MIR SINE MIR 40 150 -58 2704 168 41 4 chr1 77123181 77123692 -165540661 - L1MD3 LINE L1 -1 7994 7465 1948 149 7 0 chr1 77123720 77124008 -165540345 - AluSx SINE Alu -22 290 1 424 234 11 11 chr1 77124011 77124105 -165540248 - MLT1F1 LTR MaLR -443 124 31 248 346 49 0 chr1 77126482 77126531 -165537822 - MIR SINE MIR -82 126 70 411 73 0 0 chr1 77126531 77126586 -165537767 + (TG)n Simple_repeat Simple_repeat 2 56 0 248 346 49 0 chr1 77126586 77126617 -165537736 - MIR SINE MIR -138 70 42 343 313 70 8 chr1 77127665 77127793 -165536560 + L2 LINE L2 3137 3272 0 2145 117 10 7 chr1 77127897 77128204 -165536149 - AluSq SINE Alu -5 308 1 435 350 77 73 chr1 77130237 77130511 -165533842 - L2 LINE L2 -21 3251 2977 13587 160 8 15 chr1 77130841 77133311 -165531042 - L1P LINE L1 -1827 4319 1867 27 29 0 0 chr1 77133425 77133459 -165530894 + AT_rich Low_complexity Low_complexity 1 34 0 214 235 29 15 chr1 77134218 77134290 -165530063 + (CTTTA)n Simple_repeat Simple_repeat 1 73 0 32 86 0 0 chr1 77134388 77134469 -165529884 + AT_rich Low_complexity Low_complexity 1 81 0 234 315 70 62 chr1 77135065 77135306 -165529047 + MIR SINE MIR 20 262 0 1267 189 46 7 chr1 77135642 77135922 -165528431 + L1MB4 LINE L1 5621 5911 -269 2227 98 14 0 chr1 77136945 77137242 -165527111 + AluSp SINE Alu 1 301 -12 3015 150 10 8 chr1 77137326 77137812 -165526541 + LOR1a-int LTR ERV1 5578 6064 -2056 544 159 0 0 chr1 77137811 77137899 -165526454 + LOR1a-int LTR ERV1 8030 8117 -3 * 3234 141 0 2 chr1 77137903 77138401 -165525952 + LOR1a LTR ERV1 1 497 0 697 321 79 84 chr1 77138428 77138900 -165525453 - L2 LINE L2 -252 3061 2606 1893 164 105 5 chr1 77138900 77139289 -165525064 + MSTA LTR MaLR 1 428 0 697 321 79 84 chr1 77139289 77139382 -165524971 - L2 LINE L2 -707 2606 2514 1910 259 49 40 chr1 77139385 77139812 -165524541 + L1ME3A LINE L1 5346 5790 -380 3821 143 66 26 chr1 77139812 77140567 -165523786 - LTR1 LTR ERV1 0 785 1 1910 259 49 40 chr1 77140567 77140860 -165523493 + L1ME3A LINE L1 5790 6079 -91 25344 140 9 27 chr1 77140871 77146701 -165517652 - L1PA8A LINE L1 -350 6096 324 4723 23 2 9 chr1 77146701 77147263 -165517090 - LTR6B LTR ERV1 0 558 1 25344 140 9 27 chr1 77147263 77147578 -165516775 - L1PA8A LINE L1 -6122 324 5 2086 188 14 41 chr1 77147602 77147999 -165516354 - L1MB1 LINE L1 -1 6167 5797 226 68 23 23 chr1 77147999 77148043 -165516310 - LTR9 LTR ERV1 -86 526 483 2086 188 14 41 chr1 77148043 77148222 -165516131 - L1MB1 LINE L1 -371 5797 5615 * 4797 218 24 140 chr1 77148220 77150856 -165513497 - L1M2 LINE L1 -4878 2331 1 185 353 63 93 chr1 77151206 77151475 -165512878 - L2 LINE L2 -64 3208 2948 315 91 0 18 chr1 77152292 77152347 -165512006 + L1PA13 LINE L1 6107 6160 -3 527 307 86 6 chr1 77152752 77152915 -165511438 + MIR SINE MIR 86 261 -1 226 139 0 0 chr1 77152964 77153000 -165511353 + L2 LINE L2 3269 3304 -9 331 303 139 36 chr1 77153115 77153280 -165511073 - L2 LINE L2 0 3313 3132 225 274 52 96 chr1 77153283 77153328 -165511025 + MIR SINE MIR 119 164 -98 2063 116 137 11 chr1 77153328 77153708 -165510645 + MSTA LTR MaLR 1 428 0 225 274 52 96 chr1 77153708 77153797 -165510556 + MIR SINE MIR 164 247 -15 731 206 46 40 chr1 77153950 77154125 -165510228 + MER58A DNA MER1_type 49 224 0 345 320 0 19 chr1 77154247 77154350 -165510003 - L2 LINE L2 -219 3053 2953 252 318 56 71 chr1 77154506 77154704 -165509649 - L2 LINE L2 -556 2758 2564 695 287 63 14 chr1 77155027 77155250 -165509103 - MIR SINE MIR -15 247 14 384 241 21 84 chr1 77155595 77155786 -165508567 + LTR67 LTR ERVL 350 528 -29 986 243 45 75 chr1 77159530 77159996 -165504357 + LTR37B LTR ERV1 8 459 -9 267 250 38 25 chr1 77162013 77162093 -165502260 - MLT1K LTR MaLR -112 476 396 7440 216 100 19 chr1 77162232 77164209 -165500144 - L1 LINE L1 -1630 5578 3762 1315 160 251 29 chr1 77164209 77164559 -165499794 - MSTA LTR MaLR 0 428 1 9167 149 8 45 chr1 77164559 77166197 -165498156 - THE1C-int LTR MaLR 0 1580 3 1682 167 79 20 chr1 77166199 77166553 -165497800 - THE1C LTR MaLR 0 375 1 7440 216 100 19 chr1 77166553 77167091 -165497262 - L1 LINE L1 -3446 3762 3269 200 35 35 0 chr1 77167091 77167120 -165497233 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7440 216 100 19 chr1 77167120 77168020 -165496333 - L1 LINE L1 -3939 3269 1879 1691 306 18 32 chr1 77168197 77168815 -165495538 - L1 LINE L1 -6568 641 33 324 48 0 0 chr1 77170467 77170509 -165493844 + (TTGTG)n Simple_repeat Simple_repeat 4 45 0 2254 86 0 0 chr1 77170512 77170792 -165493561 - AluSg1 SINE Alu -29 280 1 673 277 97 25 chr1 77171098 77171336 -165493017 - MIR SINE MIR 0 262 8 1538 199 14 0 chr1 77171996 77172310 -165492043 + AluJo SINE Alu 7 312 0 576 303 58 5 chr1 77172333 77172521 -165491832 - MIR SINE MIR -54 208 11 447 272 0 19 chr1 77172796 77172899 -165491454 + AluY SINE Alu 1 101 -217 2372 125 12 10 chr1 77172911 77173272 -165491081 + THE1B LTR MaLR 3 432 0 8179 116 11 1 chr1 77173272 77174778 -165489575 + THE1B-int LTR MaLR 20 1580 0 2698 111 0 0 chr1 77174780 77175142 -165489211 + THE1B LTR MaLR 3 364 0 1874 185 6 0 chr1 77175497 77175837 -165488516 + MER7A DNA MER2_type 3 342 -4 1242 267 60 39 chr1 77176314 77176801 -165487552 + MER20B DNA MER1_type 35 531 -252 687 153 102 0 chr1 77177166 77177303 -165487050 - L1PA16 LINE L1 -9 6157 6007 1535 103 21 0 chr1 77177509 77177742 -165486611 - L1P LINE L1 -792 5354 5117 5545 78 12 0 chr1 77177842 77178595 -165485758 + L1PA7 LINE L1 5392 6153 -1 213 39 0 0 chr1 77179265 77179291 -165485062 + (TTA)n Simple_repeat Simple_repeat 2 27 0 400 298 72 52 chr1 77180251 77180614 -165483739 + L1ME2 LINE L1 39 408 -5988 2820 255 60 80 chr1 77181055 77181187 -165483166 + L1ME2 LINE L1 1639 1772 -4443 2161 209 28 13 chr1 77181187 77181647 -165482706 - MLT1C LTR MaLR 0 467 1 2820 255 60 80 chr1 77181647 77183689 -165480664 + L1ME2 LINE L1 1772 3737 -2478 374 248 50 0 chr1 77183689 77183830 -165480523 + L1ME2 LINE L1 4475 4622 -1593 728 248 121 65 chr1 77183834 77184011 -165480342 + L1ME2 LINE L1 4864 5030 -1185 1768 164 10 17 chr1 77184011 77184303 -165480050 - AluJb SINE Alu -22 290 1 728 248 121 65 chr1 77184303 77184605 -165479748 + L1ME2 LINE L1 5030 5370 -845 868 202 39 81 chr1 77184635 77184860 -165479493 + L1ME2 LINE L1 5442 5652 -581 2322 105 0 3 chr1 77184860 77185166 -165479187 - AluSx SINE Alu -5 307 3 868 202 39 81 chr1 77185166 77185247 -165479106 + L1ME2 LINE L1 5652 5735 -498 1294 214 69 100 chr1 77185255 77185793 -165478560 + L1ME2 LINE L1 5703 6223 -10 1013 234 4 18 chr1 77186109 77186336 -165478017 - MER58A DNA MER1_type 0 224 1 596 341 97 19 chr1 77186405 77186843 -165477510 + L2 LINE L2 2643 3143 -170 2145 120 7 0 chr1 77186843 77187144 -165477209 - AluSp SINE Alu -10 303 1 596 341 97 19 chr1 77187144 77187323 -165477030 + L2 LINE L2 3143 3306 -7 507 95 0 0 chr1 77187450 77187524 -165476829 + (CA)n Simple_repeat Simple_repeat 2 75 0 551 171 11 0 chr1 77187723 77187811 -165476542 - Tigger3b DNA MER2_type 0 1241 1153 3354 133 108 16 chr1 77187911 77188368 -165475985 - Tigger3b DNA MER2_type -2290 738 198 2941 171 4 4 chr1 77188368 77188854 -165475499 - MER66B LTR ERV1 0 486 1 3354 133 108 16 chr1 77188854 77189072 -165475281 - Tigger3b DNA MER2_type -2830 198 1 23 68 0 0 chr1 77189187 77189231 -165475122 + AT_rich Low_complexity Low_complexity 1 44 0 34 65 0 0 chr1 77189309 77189371 -165474982 + AT_rich Low_complexity Low_complexity 1 62 0 345 253 280 67 chr1 77189447 77189814 -165474539 + MLT1J LTR MaLR 13 458 -53 868 125 2 5 chr1 77189814 77190056 -165474297 - MER51B LTR ERV1 0 377 48 375 132 171 13 chr1 77190041 77190117 -165474236 - MER51A LTR ERV1 -541 93 6 * 1982 144 43 3 chr1 77190124 77190451 -165473902 - MER51A-int LTR ERV1 -4 7812 7473 516 191 50 64 chr1 77190453 77190594 -165473759 - LTR54B LTR ERV1 -357 141 3 4530 97 47 0 chr1 77190594 77191232 -165473121 - MER51A-int LTR ERV1 -389 7148 6481 3207 114 39 0 chr1 77191228 77191693 -165472660 - MER51A-int LTR ERV1 -1244 6293 5811 * 762 64 27 0 chr1 77191698 77191808 -165472545 + MER51-int LTR ERV1 2997 3109 -4707 3468 120 25 21 chr1 77191814 77192381 -165471972 - MER51A-int LTR ERV1 -1720 5817 5249 2801 122 34 11 chr1 77192420 77192895 -165471458 - MER51-int LTR ERV1 -3929 3887 3402 1794 55 4 21 chr1 77192995 77193231 -165471122 - AluY SINE Alu -79 232 1 4183 107 107 13 chr1 77194071 77194781 -165469572 - L1PA16 LINE L1 0 6166 5390 1554 212 45 9 chr1 77194778 77195124 -165469229 + L1P LINE L1 4953 5285 -861 * 2131 110 0 0 chr1 77195124 77195436 -165468917 + AluSc SINE Alu 1 312 0 2132 81 4 4 chr1 77195436 77195728 -165468625 + AluY SINE Alu 20 311 0 1554 212 45 9 chr1 77195728 77195803 -165468550 + L1P LINE L1 5284 5391 -755 1035 197 68 13 chr1 77195980 77196138 -165468215 + LTR52 LTR ERVL 173 350 -71 342 0 0 0 chr1 77196138 77196176 -165468177 + (TG)n Simple_repeat Simple_repeat 2 39 0 1035 197 68 13 chr1 77196176 77196251 -165468102 + LTR52 LTR ERVL 350 419 -2 600 93 0 0 chr1 77196390 77196487 -165467866 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 328 234 177 16 chr1 77198147 77198271 -165466082 - MIR SINE MIR 0 262 119 252 340 86 5 chr1 77198493 77198702 -165465651 - L1M4 LINE L1 -907 5239 5014 454 312 9 1 chr1 77198743 77198874 -165465479 - MIR SINE MIR -65 143 20 293 261 0 0 chr1 77198894 77198959 -165465394 - MIR SINE MIR -70 138 74 185 412 34 14 chr1 77199725 77199873 -165464480 + L2 LINE L2 2925 3075 -197 430 274 158 6 chr1 77200665 77200829 -165463524 - MIR SINE MIR -29 233 45 21 71 0 0 chr1 77201136 77201178 -165463175 + AT_rich Low_complexity Low_complexity 1 42 0 399 341 122 35 chr1 77201337 77201788 -165462565 + L2 LINE L2 2824 3313 0 380 344 50 0 chr1 77201812 77201972 -165462381 + MIR SINE MIR 95 262 0 1244 198 8 8 chr1 77202745 77202987 -165461366 + Tigger2 DNA MER2_type 2474 2715 -3 275 319 0 33 chr1 77203143 77203234 -165461119 - L2 LINE L2 -1 3271 3184 392 251 146 23 chr1 77203265 77203371 -165460982 + MIR SINE MIR 61 153 -109 3044 180 10 86 chr1 77203371 77203965 -165460388 - MER67C LTR ERV1 0 710 185 2740 32 0 0 chr1 77203965 77204276 -165460077 - AluY SINE Alu 0 311 1 3044 180 10 86 chr1 77204276 77204449 -165459904 - MER67C LTR ERV1 -525 185 1 392 251 146 23 chr1 77204449 77204513 -165459840 + MIR SINE MIR 153 252 -10 301 313 134 19 chr1 77204907 77205121 -165459232 + MIR SINE MIR 48 261 -1 180 0 0 0 chr1 77206060 77206080 -165458273 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 2488 76 3 0 chr1 77207072 77207402 -165456951 - L1PA7 LINE L1 -232 5922 5592 1718 42 37 0 chr1 77207402 77207617 -165456736 + L1PA7 LINE L1 5930 6153 -1 378 338 35 14 chr1 77208559 77208704 -165455649 + MIR SINE MIR 3 150 -112 218 205 169 36 chr1 77209297 77209380 -165454973 + MIR SINE MIR 113 206 -56 811 184 54 54 chr1 77209482 77209667 -165454686 - AluJo SINE Alu -116 196 12 406 361 109 15 chr1 77210535 77210975 -165453378 + L2 LINE L2 2564 3035 -237 223 306 69 0 chr1 77211070 77211142 -165453211 + L2 LINE L2 3191 3267 -5 2175 288 88 41 chr1 77211339 77212775 -165451578 - L2 LINE L2 -18 3295 1786 27 0 0 0 chr1 77212819 77212846 -165451507 + AT_rich Low_complexity Low_complexity 1 27 0 399 145 0 0 chr1 77213147 77213216 -165451137 + (TCCA)n Simple_repeat Simple_repeat 2 70 0 16433 126 20 18 chr1 77213415 77216216 -165448137 - MER51B-int LTR ERV1 -4596 3220 416 1192 81 35 17 chr1 77216228 77216400 -165447953 - MER51B-int LTR ERV1 -7641 175 1 1812 120 0 43 chr1 77216400 77216741 -165447612 - MER51B LTR ERV1 0 377 1 207 173 0 39 chr1 77216744 77216796 -165447557 + T-rich Low_complexity Low_complexity 2 51 0 287 373 6 30 chr1 77216913 77217082 -165447271 + MIR SINE MIR 90 254 -8 273 204 0 19 chr1 77217673 77217727 -165446626 + MER103 DNA DNA 66 118 -48 213 333 30 45 chr1 77218091 77218223 -165446130 + MIR3 SINE MIR 78 207 -1 403 309 7 36 chr1 77219225 77219364 -165444989 - L2 LINE L2 0 3272 3138 419 327 37 0 chr1 77219889 77220051 -165444302 - L2 LINE L2 -989 2325 2158 22 35 0 0 chr1 77220479 77220508 -165443845 + AT_rich Low_complexity Low_complexity 1 29 0 18607 194 23 13 chr1 77220970 77227710 -165436643 - L1PA13 LINE L1 -2 6812 1 397 0 38 0 chr1 77228456 77228509 -165435844 + (TG)n Simple_repeat Simple_repeat 2 56 0 270 81 0 0 chr1 77229350 77229387 -165434966 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 704 133 13 26 chr1 77229632 77229783 -165434570 + L1MA4A LINE L1 6153 6301 -2 273 296 43 26 chr1 77230233 77230348 -165434005 + MER117 DNA MER1_type 1 117 -80 192 368 86 0 chr1 77230740 77230857 -165433496 - L2 LINE L2 -1 3312 3186 252 291 18 45 chr1 77233270 77233305 -165431048 + LTR67 LTR ERVL 449 555 -2 335 173 27 13 chr1 77233305 77233380 -165430973 + MLT1K LTR MaLR 511 586 -2 26 0 0 0 chr1 77234220 77234246 -165430107 + AT_rich Low_complexity Low_complexity 1 26 0 493 275 36 48 chr1 77234620 77234787 -165429566 - L2 LINE L2 0 3313 3149 29 28 0 0 chr1 77235257 77235293 -165429060 + AT_rich Low_complexity Low_complexity 1 36 0 524 250 99 6 chr1 77235304 77235476 -165428877 - MIR SINE MIR 0 262 75 251 299 56 42 chr1 77235660 77235804 -165428549 - MLT1H LTR MaLR 0 549 404 401 276 69 14 chr1 77235939 77236084 -165428269 - MLT1H LTR MaLR -389 160 8 199 247 86 86 chr1 77236990 77237083 -165427270 - MIR SINE MIR 0 262 170 612 333 62 62 chr1 77237092 77237764 -165426589 - L2 LINE L2 -1 3271 2563 258 149 60 15 chr1 77237776 77237843 -165426510 + HsTC2 DNA Tc2 1 70 -1828 281 304 27 18 chr1 77237915 77238027 -165426326 + HsTC2 DNA Tc2 1328 1616 -282 * 456 183 8 0 chr1 77238019 77238117 -165426236 + HsTC2 DNA Tc2 1790 1897 -1 201 393 41 0 chr1 77238272 77238417 -165425936 - L2 LINE L2 -907 2407 2257 1423 141 9 0 chr1 77238747 77238967 -165425386 + AluSg SINE Alu 1 222 -88 415 113 0 0 chr1 77239103 77239165 -165425188 + AluS SINE Alu 233 294 -18 838 76 30 5 chr1 77239512 77239710 -165424643 + AluY SINE Alu 1 301 -10 285 235 0 0 chr1 77240164 77240249 -165424104 + T-rich Low_complexity Low_complexity 1 85 0 406 322 128 14 chr1 77241535 77241886 -165422467 - L1M4 LINE L1 -2982 3164 2774 240 59 0 0 chr1 77241968 77242002 -165422351 + (TTATA)n Simple_repeat Simple_repeat 5 38 0 24 0 0 0 chr1 77242063 77242087 -165422266 + AT_rich Low_complexity Low_complexity 1 24 0 2972 41 3 0 chr1 77242657 77243019 -165421334 + L1PA5 LINE L1 5788 6150 -4 802 270 36 124 chr1 77243162 77243919 -165420434 + MER77 LTR ERV1 54 601 -4 386 231 103 43 chr1 77244449 77244566 -165419787 - MER94 DNA DNA -10 124 1 315 49 0 0 chr1 77244603 77244644 -165419709 + (TATG)n Simple_repeat Simple_repeat 2 42 0 214 104 21 21 chr1 77244644 77244692 -165419661 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 257 294 87 56 chr1 77244800 77245086 -165419267 - HAL1 LINE L1 -1031 1476 1182 27 0 0 0 chr1 77245214 77245241 -165419112 + AT_rich Low_complexity Low_complexity 1 27 0 33 0 0 0 chr1 77246922 77246955 -165417398 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr1 77247425 77247447 -165416906 + AT_rich Low_complexity Low_complexity 1 22 0 24 85 0 0 chr1 77248336 77248395 -165415958 + AT_rich Low_complexity Low_complexity 1 59 0 271 348 37 7 chr1 77248674 77248809 -165415544 + MIR SINE MIR 74 212 -50 597 352 75 4 chr1 77249489 77249756 -165414597 + MLT1I LTR MaLR 117 402 -7 233 288 0 0 chr1 77250028 77250087 -165414266 + L2 LINE L2 3255 3313 0 2270 157 2 59 chr1 77250959 77251385 -165412968 + MLT2D LTR ERVL 3 404 -10 2224 120 0 0 chr1 77252356 77252665 -165411688 + AluSx SINE Alu 1 309 -3 550 310 66 92 chr1 77252674 77253464 -165410889 + HAL1 LINE L1 879 1647 -860 336 103 29 15 chr1 77254875 77254943 -165409410 + (TA)n Simple_repeat Simple_repeat 2 70 0 1406 199 89 33 chr1 77255147 77255484 -165408869 - MLT1A1 LTR MaLR 0 365 10 560 301 109 72 chr1 77255525 77256084 -165408269 + L1M4 LINE L1 4123 4702 -1444 2234 76 7 3 chr1 77256138 77256440 -165407913 - AluY SINE Alu -8 303 1 1661 252 43 75 chr1 77256595 77257155 -165407198 - MER77 LTR ERV1 -10 595 54 1239 154 0 27 chr1 77257401 77257622 -165406731 + L1M4c LINE L1 21 235 -6149 3154 91 8 12 chr1 77257630 77258112 -165406241 + L1M4c LINE L1 1888 2367 -4017 1870 158 46 8 chr1 77258112 77258480 -165405873 + L1MB3 LINE L1 5800 6181 -2 1758 222 14 3 chr1 77258518 77258879 -165405474 - MLT1A1 LTR MaLR 0 365 1 2145 183 110 68 chr1 77258999 77259589 -165404764 + LTR29 LTR ERV1 3 617 -5 1395 209 77 24 chr1 77260289 77260329 -165404024 - MLT2B1 LTR ERVL 0 520 484 396 0 0 0 chr1 77260329 77260373 -165403980 + (TA)n Simple_repeat Simple_repeat 2 45 0 1395 209 77 24 chr1 77260373 77260746 -165403607 - MLT2B1 LTR ERVL -36 484 30 2131 102 37 34 chr1 77260770 77260907 -165403446 - THE1A LTR MaLR 0 355 220 180 0 0 0 chr1 77260907 77260927 -165403426 + (TGG)n Simple_repeat Simple_repeat 3 22 0 2131 102 37 34 chr1 77260927 77261143 -165403210 - THE1A LTR MaLR -135 220 1 11178 102 14 1 chr1 77261143 77262702 -165401651 - THE1A-int LTR MaLR 0 1580 1 2014 155 29 9 chr1 77262702 77263050 -165401303 - THE1A LTR MaLR 0 355 1 790 264 45 93 chr1 77263056 77263585 -165400768 - MER34 LTR ERV1 -17 636 18 2605 187 12 18 chr1 77263641 77264138 -165400215 - ERVL LTR ERVL -1483 4281 3788 227 410 68 16 chr1 77264193 77264442 -165399911 + L2 LINE L2 2633 2894 -420 350 341 32 0 chr1 77264759 77264885 -165399468 + MIR SINE MIR 2 131 -131 2511 58 0 7 chr1 77264916 77265226 -165399127 - AluSp SINE Alu -5 308 1 305 371 16 92 chr1 77265822 77266245 -165398108 + L2 LINE L2 2830 3220 -52 364 279 12 73 chr1 77266957 77267122 -165397231 + MIR SINE MIR 2 156 -106 1598 264 33 53 chr1 77267925 77268530 -165395823 + MLT1E LTR MaLR 1 593 0 571 281 95 7 chr1 77268688 77268894 -165395459 - MLT1H1 LTR MaLR -311 281 44 234 295 63 44 chr1 77269843 77270114 -165394239 - MLT1-int LTR MaLR -835 536 261 435 289 136 33 chr1 77270344 77270772 -165393581 + MLT1H LTR MaLR 16 553 -2 350 235 76 42 chr1 77271427 77271546 -165392807 - MIR SINE MIR -67 141 19 271 327 37 9 chr1 77272052 77272159 -165392194 + MIR SINE MIR 153 262 0 23 0 0 0 chr1 77272212 77272235 -165392118 + AT_rich Low_complexity Low_complexity 1 23 0 711 221 70 12 chr1 77272367 77272539 -165391814 + MER3 DNA MER1_type 28 209 0 573 212 54 38 chr1 77272750 77272934 -165391419 + Charlie7 DNA MER1_type 1 187 -2425 9792 239 50 28 chr1 77273137 77279686 -165384667 + L1PB4 LINE L1 64 6849 -9 1145 232 159 44 chr1 77279686 77280275 -165384078 + Charlie7 DNA MER1_type 1757 2443 -169 2152 113 3 0 chr1 77280275 77280576 -165383777 - AluSg SINE Alu -6 304 3 1145 232 159 44 chr1 77280576 77280697 -165383656 + Charlie7 DNA MER1_type 2443 2549 -63 370 283 54 94 chr1 77280876 77281099 -165383254 - MIR SINE MIR 0 262 49 388 263 146 58 chr1 77281149 77281229 -165383124 - MIR SINE MIR 0 262 190 1945 156 0 10 chr1 77281229 77281530 -165382823 + AluJb SINE Alu 3 300 -12 388 263 146 58 chr1 77281530 77281689 -165382664 - MIR SINE MIR -72 190 2 22 0 0 0 chr1 77283204 77283226 -165381127 + AT_rich Low_complexity Low_complexity 1 22 0 433 261 64 0 chr1 77283640 77283797 -165380556 - MER53 DNA DNA -22 167 1 268 254 0 16 chr1 77283809 77283872 -165380481 - MLT1H LTR MaLR -355 194 133 230 345 24 0 chr1 77284767 77284851 -165379502 - L2 LINE L2 -2 3311 3226 273 345 81 29 chr1 77284906 77285098 -165379255 - MIR SINE MIR -53 209 16 214 327 95 48 chr1 77285140 77285308 -165379045 + MIR SINE MIR 1 176 -86 201 312 0 26 chr1 77285364 77285441 -165378912 + MIR SINE MIR 178 252 -10 399 281 113 27 chr1 77286339 77286524 -165377829 + MIR SINE MIR 35 235 -27 293 342 9 18 chr1 77286527 77286638 -165377715 - L2 LINE L2 -994 2320 2211 356 239 39 54 chr1 77287376 77287506 -165376847 - L1MEc LINE L1 -2497 3718 3591 4058 256 86 79 chr1 77287534 77287889 -165376464 - L1MEc LINE L1 -4056 2340 1989 4815 152 12 13 chr1 77287889 77288198 -165376155 - L1MC1 LINE L1 -5 6328 6020 2133 141 0 0 chr1 77288198 77288502 -165375851 + AluSx SINE Alu 1 304 -8 4815 152 12 13 chr1 77288502 77289033 -165375320 - L1MC1 LINE L1 -313 6020 5489 4058 256 86 79 chr1 77289033 77289139 -165375214 - L1MEc LINE L1 -4407 1989 1885 6883 62 12 12 chr1 77289139 77290128 -165374225 - L1PA7 LINE L1 -5 6149 5158 4058 256 86 79 chr1 77290128 77291899 -165372454 - L1MEc LINE L1 -4511 1885 92 186 172 0 0 chr1 77292002 77292031 -165372322 - MIR SINE MIR -230 32 4 7840 156 13 18 chr1 77292961 77294336 -165370017 + Tigger1 DNA MER2_type 1050 2418 0 301 268 0 52 chr1 77294760 77294857 -165369496 - MLT1J2 LTR MaLR 0 450 359 815 230 77 85 chr1 77295911 77296489 -165367864 + MER76 LTR ERV 12 649 -39 180 77 0 0 chr1 77296936 77296962 -165367391 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 231 242 15 15 chr1 77297438 77297504 -165366849 + CT-rich Low_complexity Low_complexity 3 68 0 269 135 19 0 chr1 77298188 77298240 -165366113 + CT-rich Low_complexity Low_complexity 4 56 0 566 299 151 14 chr1 77298574 77298992 -165365361 + MER113 DNA MER1_type? 1 475 -46 2199 119 0 3 chr1 77299697 77299999 -165364354 + AluSx SINE Alu 3 303 -9 185 241 0 56 chr1 77300515 77300569 -165363784 + MIR3 SINE MIR 144 194 -14 214 358 0 0 chr1 77300973 77301040 -165363313 - L2 LINE L2 -2 3270 3204 * 240 337 219 6 chr1 77301019 77301197 -165363156 - L3 LINE CR1 -122 1455 1240 290 250 11 0 chr1 77301255 77301347 -165363006 + (TA)n Simple_repeat Simple_repeat 1 93 0 274 287 111 9 chr1 77302858 77302966 -165361387 + MIR SINE MIR 22 140 -68 1368 210 69 69 chr1 77303291 77303757 -165360596 + MER31B LTR ERV1 1 466 0 2448 72 0 0 chr1 77303862 77304168 -165360185 + AluY SINE Alu 1 306 -5 202 322 118 40 chr1 77304924 77305076 -165359277 - L3 LINE CR1 -20 1557 1394 23 68 0 0 chr1 77305168 77305212 -165359141 + AT_rich Low_complexity Low_complexity 1 44 0 422 284 290 18 chr1 77306740 77307211 -165357142 - L2 LINE L2 -60 3253 2666 1853 161 18 47 chr1 77307963 77308348 -165356005 + THE1C LTR MaLR 1 374 -1 458 309 56 22 chr1 77308585 77308763 -165355590 + MLT1J2 LTR MaLR 266 449 -1 252 258 16 0 chr1 77308842 77308904 -165355449 + MIR SINE MIR 75 137 -125 641 329 228 2 chr1 77308904 77309409 -165354944 - L3 LINE CR1 -333 1244 626 640 269 92 51 chr1 77309653 77309969 -165354384 + MER20B DNA MER1_type 2 330 -453 262 286 0 0 chr1 77310142 77310205 -165354148 + MIR SINE MIR 75 137 -125 205 246 31 0 chr1 77310205 77310270 -165354083 - L3 LINE CR1 -333 1244 1178 498 231 88 19 chr1 77310537 77310697 -165353656 + MER20B DNA MER1_type 515 685 -98 * 930 200 72 128 chr1 77310693 77311068 -165353285 - MLT1A2 LTR MaLR -16 358 5 245 186 62 41 chr1 77311072 77311169 -165353184 + MER20B DNA MER1_type 679 777 -6 1282 297 40 33 chr1 77311386 77311840 -165352513 + LTR16C LTR ERVL 35 491 0 610 295 65 85 chr1 77311856 77312209 -165352144 + LTR33A LTR ERVL 1 346 -177 370 333 53 63 chr1 77313771 77313960 -165350393 - MER5A DNA MER1_type 0 189 3 40630 36 35 17 chr1 77313967 77317419 -165346934 + L1PA2 LINE L1 3 3700 -2455 229 244 12 58 chr1 77317419 77317505 -165346848 - MSTB2 LTR MaLR -240 217 136 40630 36 35 17 chr1 77317505 77320001 -165344352 + L1PA2 LINE L1 3700 6149 -6 189 0 0 0 chr1 77320005 77320026 -165344327 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 296 266 21 104 chr1 77320151 77320343 -165344010 - MER5B DNA MER1_type -2 176 1 296 255 85 32 chr1 77320576 77320670 -165343683 - MIR SINE MIR -82 180 82 2229 111 3 3 chr1 77322520 77322826 -165341527 + AluSc SINE Alu 1 306 -3 237 273 39 0 chr1 77322961 77323038 -165341315 - MLT1K LTR MaLR -3 585 506 364 289 46 66 chr1 77323176 77323373 -165340980 - MLT1K LTR MaLR -305 283 91 21 0 0 0 chr1 77323575 77323596 -165340757 + AT_rich Low_complexity Low_complexity 1 21 0 474 18 0 0 chr1 77324123 77324178 -165340175 + (CA)n Simple_repeat Simple_repeat 2 56 0 6374 16 0 1 chr1 77325245 77326011 -165338342 - L1PA2 LINE L1 0 6155 5417 1705 92 0 13 chr1 77326596 77326823 -165337530 - AluY SINE Alu -14 297 74 22 0 0 0 chr1 77328407 77328429 -165335924 + AT_rich Low_complexity Low_complexity 1 22 0 1915 141 24 3 chr1 77328494 77328784 -165335569 + AluSx SINE Alu 2 297 -15 451 299 56 0 chr1 77329145 77329289 -165335064 - MIR SINE MIR -96 166 15 225 291 39 79 chr1 77329400 77329467 -165334886 - MER117 DNA MER1_type -1 196 128 1187 165 22 22 chr1 77329467 77329691 -165334662 + MER58A DNA MER1_type 1 224 0 225 291 39 79 chr1 77329691 77329826 -165334527 - MER117 DNA MER1_type -69 128 2 319 329 65 35 chr1 77331151 77331321 -165333032 - L2 LINE L2 -213 3059 2885 463 298 42 5 chr1 77331356 77331497 -165332856 + MIR SINE MIR 34 188 -63 236 164 36 0 chr1 77331545 77331600 -165332753 + (TTA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr1 77331676 77331697 -165332656 + AT_rich Low_complexity Low_complexity 1 21 0 41614 62 2 2 chr1 77331810 77337950 -165326403 + L1PA5 LINE L1 11 6154 0 2046 152 21 30 chr1 77338085 77338508 -165325845 - MER39 LTR ERV1 -2 705 223 6787 190 84 81 chr1 77338653 77339763 -165324590 - MER65-int LTR ERV1 -164 4772 3667 1785 134 99 3 chr1 77339763 77340046 -165324307 + AluSq SINE Alu 1 310 -3 6787 190 84 81 chr1 77340046 77340248 -165324105 - MER65-int LTR ERV1 -1269 3667 3467 1867 149 17 20 chr1 77340248 77340543 -165323810 - AluSx SINE Alu -14 298 5 6787 190 84 81 chr1 77340543 77341407 -165322946 - MER65-int LTR ERV1 -1469 3467 2589 23 0 0 0 chr1 77341407 77341430 -165322923 + AT_rich Low_complexity Low_complexity 1 23 0 1663 188 3 20 chr1 77341433 77341737 -165322616 + AluJb SINE Alu 1 299 -13 851 168 6 25 chr1 77341784 77341945 -165322408 - AluSp SINE Alu -17 296 139 572 110 0 11 chr1 77342052 77342143 -165322210 - AluS SINE Alu -216 97 8 422 182 37 90 chr1 77342205 77342418 -165321935 - MER65-int LTR ERV1 -1500 4269 3176 21 0 0 0 chr1 77342433 77342454 -165321899 + AT_rich Low_complexity Low_complexity 1 21 0 735 200 26 13 chr1 77342515 77342670 -165321683 + Tigger1 DNA MER2_type 1 157 -2261 * 1177 151 9 36 chr1 77342657 77342784 -165321569 + Tigger1 DNA MER2_type 2200 2320 -98 3916 125 40 8 chr1 77342784 77343408 -165320945 - LTR9B LTR ERV1 0 644 1 1177 151 9 36 chr1 77343408 77343505 -165320848 + Tigger1 DNA MER2_type 2320 2418 0 283 258 167 0 chr1 77343527 77343647 -165320706 - MER65-int LTR ERV1 -6427 1693 1554 435 184 31 10 chr1 77344140 77344238 -165320115 - MER65-int LTR ERV1 -2749 2122 2023 261 227 148 11 chr1 77344256 77344344 -165320009 - MER65-int LTR ERV1 -3795 1141 1042 234 202 143 36 chr1 77344488 77344572 -165319781 - MER67D LTR ERV1 -296 218 126 397 279 0 18 chr1 77344589 77344700 -165319653 - MER65-int LTR ERV1 -4063 873 765 480 213 57 25 chr1 77344767 77344889 -165319464 + MER54A LTR ERVL 49 342 -470 321 125 0 0 chr1 77344875 77344923 -165319430 + MER54B LTR ERVL 746 793 0 * 456 158 26 0 chr1 77344923 77344996 -165319357 - MER31A LTR ERV1 -400 85 11 1194 170 41 162 chr1 77345018 77345560 -165318793 - MER65-int LTR ERV1 -4483 1848 1373 276 91 0 0 chr1 77345601 77345645 -165318708 + (A)n Simple_repeat Simple_repeat 1 44 0 461 242 187 25 chr1 77345646 77345844 -165318509 - MER65-int LTR ERV1 -5736 595 366 207 0 0 0 chr1 77346058 77346081 -165318272 + (TTG)n Simple_repeat Simple_repeat 1 23 0 2040 139 36 0 chr1 77346206 77346538 -165317815 - MER39 LTR ERV1 -24 683 340 433 204 54 0 chr1 77346539 77346632 -165317721 - MER39B LTR ERV1 -418 235 138 324 262 140 3 chr1 77346936 77347073 -165317280 - MLT1L LTR MaLR -362 149 1 351 330 61 28 chr1 77347078 77347290 -165317063 - MIR SINE MIR -13 249 31 306 0 0 0 chr1 77347328 77347362 -165316991 + (CA)n Simple_repeat Simple_repeat 2 35 0 833 225 12 41 chr1 77348039 77348283 -165316070 + L1ME2 LINE L1 5917 6153 -11 417 341 131 21 chr1 77348302 77348730 -165315623 + L3 LINE CR1 433 907 -670 387 164 0 0 chr1 77348975 77349036 -165315317 - AluSp/q SINE Alu -7 296 236 1269 240 76 27 chr1 77349155 77349706 -165314647 + L1ME LINE L1 4338 4915 -1231 891 243 76 37 chr1 77349739 77349975 -165314378 + L1ME LINE L1 5000 5225 -939 228 67 0 0 chr1 77349975 77350005 -165314348 + (CA)n Simple_repeat Simple_repeat 1 30 0 891 243 76 37 chr1 77350005 77350436 -165313917 + L1ME LINE L1 5225 5738 -426 1765 237 20 13 chr1 77351265 77351662 -165312691 + L1PA12 LINE L1 1 400 -7181 3270 155 35 0 chr1 77351667 77351965 -165312388 + L1P LINE L1 3374 3660 -2486 194 0 39 0 chr1 77351965 77351991 -165312362 + (CA)n Simple_repeat Simple_repeat 2 28 0 3270 155 35 0 chr1 77351991 77352267 -165312086 + L1P LINE L1 3660 3968 -2178 1672 163 40 40 chr1 77352369 77352695 -165311658 - THE1B LTR MaLR -33 331 6 359 303 77 13 chr1 77353908 77354063 -165310290 + MIR SINE MIR 86 250 -12 3614 154 30 35 chr1 77354666 77355877 -165308476 - L1M1 LINE L1 -485 6520 5309 2746 186 26 4 chr1 77355874 77356417 -165307936 - L1M1 LINE L1 -4385 2464 1910 * 392 262 160 49 chr1 77357055 77357280 -165307073 + MIR SINE MIR 1 250 -12 1350 220 129 58 chr1 77357853 77358363 -165305990 - MER34B LTR ERV1 -22 543 5 893 144 0 0 chr1 77358432 77358578 -165305775 - L1 LINE L1 -1328 4818 4673 23 33 0 0 chr1 77359329 77359359 -165304994 + AT_rich Low_complexity Low_complexity 1 30 0 762 293 70 28 chr1 77359521 77359921 -165304432 + Charlie7 DNA MER1_type 248 664 -1948 255 266 11 21 chr1 77359929 77360023 -165304330 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 342 272 0 122 chr1 77361015 77361162 -165303191 + MIR3 SINE MIR 41 169 -39 236 341 81 61 chr1 77361470 77361863 -165302490 + L2 LINE L2 2872 3272 0 293 125 18 0 chr1 77361972 77362028 -165302325 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 2127 173 3 8 chr1 77362206 77362571 -165301782 - MLT1A1 LTR MaLR -1 364 2 215 222 42 0 chr1 77362935 77363007 -165301346 + (TA)n Simple_repeat Simple_repeat 1 75 0 220 122 0 49 chr1 77363974 77364015 -165300338 - L2 LINE L2 -101 3212 3174 333 202 28 73 chr1 77364861 77364970 -165299383 + MLT1L LTR MaLR 157 260 -355 1342 231 146 13 chr1 77365186 77365584 -165298769 - MER39 LTR ERV1 0 707 257 344 229 119 18 chr1 77365558 77365667 -165298686 - MER39 LTR ERV1 -571 136 17 * 276 263 34 68 chr1 77366563 77366681 -165297672 + L2 LINE L2 3200 3313 0 207 356 130 0 chr1 77366739 77366854 -165297499 + L3 LINE CR1 1446 1575 -2 186 150 0 0 chr1 77367998 77368038 -165296315 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 4336 107 51 18 chr1 77368590 77369251 -165295102 + LTR8 LTR ERV1 1 683 -8 3444 137 92 13 chr1 77369409 77369698 -165294655 - LTR9B LTR ERV1 0 644 379 180 0 0 0 chr1 77369698 77369718 -165294635 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3444 137 92 13 chr1 77369718 77370025 -165294328 - LTR9B LTR ERV1 -265 379 1 3499 139 20 0 chr1 77370125 77370686 -165293667 - MER34C LTR ERV1 -8 577 6 268 114 0 0 chr1 77370687 77370727 -165293626 - MER34C LTR ERV1 -545 40 1 632 155 44 112 chr1 77371015 77371211 -165293142 + Charlie5 DNA MER1_type 2324 2501 -84 2107 110 3 7 chr1 77371211 77371511 -165292842 - AluSg SINE Alu -11 299 1 632 155 44 112 chr1 77371511 77371565 -165292788 + Charlie5 DNA MER1_type 2501 2557 -28 373 346 55 46 chr1 77371746 77371963 -165292390 + MLT1K LTR MaLR 7 225 -363 3629 115 25 26 chr1 77372103 77372669 -165291684 - MER61E LTR ERV1 -4 565 1 330 360 80 36 chr1 77372834 77373222 -165291131 - L2 LINE L2 -194 3119 2722 2043 128 7 0 chr1 77373391 77373679 -165290674 - AluSx SINE Alu -22 290 1 1423 140 55 4 chr1 77374312 77374548 -165289805 - AluSg SINE Alu -3 307 60 203 289 144 10 chr1 77374711 77374808 -165289545 - L2 LINE L2 -5 3308 3199 281 351 9 27 chr1 77374876 77374987 -165289366 - L2 LINE L2 -213 3059 2951 23 33 0 0 chr1 77375243 77375273 -165289080 + AT_rich Low_complexity Low_complexity 1 30 0 1033 309 17 19 chr1 77375637 77375999 -165288354 + LTR16B LTR ERVL 95 455 -9 198 254 14 56 chr1 77376307 77376378 -165287975 + L3 LINE CR1 1296 1363 -214 22 0 0 0 chr1 77376450 77376472 -165287881 + AT_rich Low_complexity Low_complexity 1 22 0 243 213 85 43 chr1 77376672 77376766 -165287587 + L1ME LINE L1 784 881 -5189 188 35 35 0 chr1 77376774 77376803 -165287550 + (TA)n Simple_repeat Simple_repeat 2 31 0 390 332 44 40 chr1 77376829 77377103 -165287250 + L1ME LINE L1 851 1125 -4945 1584 75 9 22 chr1 77377472 77377699 -165286654 + L1PA4 LINE L1 5901 6124 -31 3757 147 71 2 chr1 77377799 77378235 -165286118 - MER4E LTR ERV1 -100 679 184 221 0 0 33 chr1 77378235 77378265 -165286088 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3757 147 71 2 chr1 77378265 77378463 -165285890 - MER4E LTR ERV1 -595 184 1 2597 161 57 4 chr1 77378599 77379070 -165285283 - LTR29 LTR ERV1 0 622 127 421 240 31 21 chr1 77379288 77379384 -165284969 - LTR29-int LTR ERV1 -255 4681 4585 991 184 15 0 chr1 77379406 77379607 -165284746 - LTR49-int LTR ERV1 -542 5789 5586 203 0 0 36 chr1 77379607 77379635 -165284718 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 16356 166 22 24 chr1 77379635 77381127 -165283226 - L1PA10 LINE L1 -20 6463 4968 2087 146 3 0 chr1 77381127 77381435 -165282918 - AluSx SINE Alu -3 309 1 16356 166 22 24 chr1 77381435 77386359 -165277994 - L1PA10 LINE L1 -1515 4968 32 1872 145 98 18 chr1 77386359 77386414 -165277939 - THE1B LTR MaLR 0 364 315 384 22 0 0 chr1 77386414 77386459 -165277894 + (CA)n Simple_repeat Simple_repeat 2 46 0 1872 145 98 18 chr1 77386459 77386740 -165277613 - THE1B LTR MaLR -49 315 1 11043 109 16 6 chr1 77386740 77388304 -165276049 - THE1B-int LTR MaLR 0 1580 1 2413 117 28 14 chr1 77388304 77388663 -165275690 - THE1B LTR MaLR 0 364 1 16356 166 22 24 chr1 77388663 77388759 -165275594 - L1PA10 LINE L1 -6448 35 1 7223 161 37 21 chr1 77388762 77389370 -165274983 - LTR49-int LTR ERV1 -738 5593 4996 588 131 93 0 chr1 77389370 77389477 -165274876 + L1PA16 LINE L1 6045 6161 -5 7223 161 37 21 chr1 77389477 77390349 -165274004 - LTR49-int LTR ERV1 -1335 4996 4089 1719 135 36 59 chr1 77390451 77390889 -165273464 - LTR49-int LTR ERV1 -2139 4192 3765 1154 167 22 31 chr1 77390893 77391120 -165273233 + THE1C LTR MaLR 151 375 0 252 120 0 40 chr1 77391121 77391171 -165273182 - LTR49-int LTR ERV1 -3909 4211 4164 866 175 43 102 chr1 77391173 77391498 -165272855 - LTR49-int LTR ERV1 -2636 3686 3380 484 214 138 21 chr1 77391504 77391649 -165272704 - MER34C LTR ERV1 -268 317 156 1348 259 21 74 chr1 77391692 77392163 -165272190 - LTR49-int LTR ERV1 -3701 2630 2185 194 227 40 40 chr1 77392353 77392428 -165271925 + L2 LINE L2 1632 1706 -1608 1669 126 86 22 chr1 77392430 77392699 -165271654 + AluSg SINE Alu 1 286 -24 242 316 82 10 chr1 77392717 77392815 -165271538 + L2 LINE L2 1700 1804 -1510 498 200 75 25 chr1 77392815 77392935 -165271418 + MLT1B LTR MaLR 1 126 -264 536 153 122 0 chr1 77393035 77393133 -165271220 - FLAM_C SINE Alu -33 110 1 446 374 114 0 chr1 77393858 77394077 -165270276 + MIR SINE MIR 4 247 -15 3389 84 29 10 chr1 77396179 77396666 -165267687 - L1PA13 LINE L1 0 6163 5668 1578 177 7 3 chr1 77396666 77396971 -165267382 + L1P LINE L1 4338 4643 -1503 5343 123 18 28 chr1 77397077 77397465 -165266888 + L1PA15 LINE L1 4218 4609 -1556 3811 150 30 58 chr1 77397465 77398273 -165266080 - LTR1 LTR ERV1 0 785 1 5343 123 18 28 chr1 77398273 77399842 -165264511 + L1PA15 LINE L1 4609 6159 -6 253 268 39 0 chr1 77400484 77400611 -165263742 + (TA)n Simple_repeat Simple_repeat 1 132 0 426 162 0 0 chr1 77400611 77400685 -165263668 + MADE1 DNA Mariner 2 75 -5 231 167 0 0 chr1 77400693 77400735 -165263618 + (CATA)n Simple_repeat Simple_repeat 3 44 0 624 333 57 8 chr1 77400963 77401347 -165263006 + L1ME4a LINE L1 5479 5881 -240 200 192 0 77 chr1 77401610 77401662 -165262691 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2266 108 0 0 chr1 77401691 77401988 -165262365 - AluSg SINE Alu -13 297 1 22 0 0 0 chr1 77402041 77402063 -165262290 + AT_rich Low_complexity Low_complexity 1 22 0 3433 106 52 6 chr1 77402064 77402604 -165261749 - L1MA1 LINE L1 -1 6301 5737 20072 175 21 13 chr1 77402604 77403342 -165261011 - L1 LINE L1 -2316 5249 4518 2350 101 0 3 chr1 77403342 77403649 -165260704 - AluSg SINE Alu -4 306 1 20072 175 21 13 chr1 77403649 77408010 -165256343 - L1 LINE L1 -3047 4518 109 7611 19 0 0 chr1 77408013 77409187 -165255166 - L1PA3 LINE L1 -1 6154 4973 7686 27 0 0 chr1 77409187 77410089 -165254264 + L1PA3 LINE L1 4058 4959 -1187 247 286 83 0 chr1 77410094 77410178 -165254175 - L1 LINE L1 -7457 108 18 386 111 0 22 chr1 77410304 77410394 -165253959 - MLT2A2 LTR ERVL 0 461 391 2610 132 29 20 chr1 77410418 77410827 -165253526 - MLT2A2 LTR ERVL -40 413 1 213 280 0 0 chr1 77410832 77410882 -165253471 + MIR SINE MIR 91 140 -68 1403 189 39 11 chr1 77410882 77411167 -165253186 + AluJo SINE Alu 17 309 -3 402 213 31 94 chr1 77412505 77412665 -165251688 + L1MDa LINE L1 1491 1640 -4900 1033 113 6 0 chr1 77412672 77412840 -165251513 - L1MA4A LINE L1 -7 6296 6128 4589 262 46 31 chr1 77412940 77414441 -165249912 - L1M2 LINE L1 -5239 1610 2 2365 263 94 17 chr1 77414472 77416256 -165248097 + L1MDa LINE L1 1657 3599 -2941 1385 220 25 89 chr1 77416264 77416701 -165247652 + MLT2D LTR ERVL 6 414 0 3118 269 48 18 chr1 77416705 77418292 -165246061 + L1MDa LINE L1 3599 5313 -1227 2661 260 63 13 chr1 77418301 77419431 -165244922 + L1M4 LINE L1 2337 3522 -2624 21 36 0 0 chr1 77419619 77419647 -165244706 + AT_rich Low_complexity Low_complexity 1 28 0 377 343 167 5 chr1 77419867 77420065 -165244288 + MIR SINE MIR 30 259 -3 1720 162 3 17 chr1 77420085 77420375 -165243978 + AluJb SINE Alu 1 286 -26 3666 220 132 19 chr1 77420610 77421783 -165242570 - Charlie1 DNA MER1_type 0 2761 1456 1401 244 78 19 chr1 77421871 77422244 -165242109 - Charlie1 DNA MER1_type -2366 395 1 185 274 226 0 chr1 77422250 77422334 -165242019 - L3 LINE CR1 -165 1412 1310 421 194 58 43 chr1 77423632 77423771 -165240582 + L1MC4 LINE L1 7491 7631 -411 601 264 38 48 chr1 77423792 77424107 -165240246 + L1MC4 LINE L1 7575 7886 -156 22 35 0 0 chr1 77424115 77424144 -165240209 + AT_rich Low_complexity Low_complexity 1 29 0 306 148 0 0 chr1 77424152 77424206 -165240147 + (TG)n Simple_repeat Simple_repeat 1 54 0 333 209 87 17 chr1 77424217 77424276 -165240077 + L1MC4 LINE L1 7918 7971 -71 354 23 0 0 chr1 77424276 77424319 -165240034 + (TG)n Simple_repeat Simple_repeat 2 44 0 333 209 87 17 chr1 77424319 77424374 -165239979 + L1MC4 LINE L1 7971 8040 -2 2337 300 62 50 chr1 77426326 77428217 -165236136 + L1MEc LINE L1 39 1963 -4433 1976 147 0 0 chr1 77428217 77428510 -165235843 + AluSx SINE Alu 1 293 -19 2337 300 62 50 chr1 77428510 77428917 -165235436 + L1MEc LINE L1 1963 2364 -4032 1771 178 78 91 chr1 77428922 77429449 -165234904 - MLT2B1 LTR ERVL 0 520 1 480 233 33 48 chr1 77429466 77429676 -165234677 + L1MEc LINE L1 2297 2503 -3712 1072 199 10 10 chr1 77429681 77429887 -165234466 + AluJo SINE Alu 85 290 -22 1600 237 105 36 chr1 77429888 77430743 -165233610 + L1MEc LINE L1 2509 3422 -2793 546 176 11 0 chr1 77430745 77430836 -165233517 + FLAM_A SINE Alu 1 92 -50 1380 84 6 0 chr1 77430938 77431117 -165233236 + AluSg/x SINE Alu 120 299 -11 250 309 36 24 chr1 77431820 77431904 -165232449 - L1MCc LINE L1 -5913 510 426 186 274 97 62 chr1 77432016 77432129 -165232224 - L2 LINE L2 -18 3295 3179 194 261 87 0 chr1 77432146 77432192 -165232161 - MER5B DNA MER1_type -126 52 3 1222 147 5 5 chr1 77432265 77432463 -165231890 + MLT1A1 LTR MaLR 6 203 -162 666 277 59 50 chr1 77432714 77433035 -165231318 - L1MCc LINE L1 -5450 973 650 288 341 61 18 chr1 77433055 77433219 -165231134 - L1MCc LINE L1 -5836 587 417 389 263 20 0 chr1 77433221 77433320 -165231033 - L1MCc LINE L1 -6050 373 273 5081 148 36 1 chr1 77433321 77434738 -165229615 + L1PA14 LINE L1 4692 6155 -6 405 263 110 13 chr1 77434827 77435063 -165229290 - L1MCc LINE L1 -6135 288 30 1934 165 0 7 chr1 77436652 77436955 -165227398 - AluSx SINE Alu -11 301 1 312 246 22 109 chr1 77437757 77437895 -165226458 + MIR SINE MIR 66 191 -71 2546 104 11 8 chr1 77437907 77438281 -165226072 + THE1C LTR MaLR 1 375 0 437 281 58 0 chr1 77438419 77438558 -165225795 + MER117 DNA MER1_type 2 148 -49 501 324 7 7 chr1 77439308 77439444 -165224909 - L2 LINE L2 0 3313 3178 10583 39 0 1 chr1 77439676 77441042 -165223311 - L1PA3 LINE L1 -1799 4347 2983 8538 35 0 0 chr1 77441042 77442851 -165221502 + L1PA3 LINE L1 4349 6155 0 195 69 0 0 chr1 77442855 77442884 -165221469 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 778 274 112 23 chr1 77443219 77443439 -165220914 + LTR16A LTR ERVL 164 412 -38 1018 224 162 15 chr1 77443439 77443597 -165220756 + MLT1B LTR MaLR 1 134 -256 252 0 0 0 chr1 77443597 77443625 -165220728 + (TC)n Simple_repeat Simple_repeat 1 28 0 1018 224 162 15 chr1 77443625 77443806 -165220547 + MLT1B LTR MaLR 134 390 0 778 274 112 23 chr1 77443806 77443844 -165220509 + LTR16A LTR ERVL 412 445 -5 233 336 104 83 chr1 77444745 77444986 -165219367 + L2 LINE L2 2941 3186 -86 1963 111 4 4 chr1 77445317 77445596 -165218757 - AluSg SINE Alu -31 279 1 1048 221 95 45 chr1 77445704 77446062 -165218291 + L1ME1 LINE L1 5786 6161 -5 203 312 13 39 chr1 77446306 77446383 -165217970 + L2 LINE L2 3237 3311 -2 208 189 0 0 chr1 77446387 77446424 -165217929 + L2 LINE L2 3018 3054 -218 25170 133 14 40 chr1 77446491 77450851 -165213502 - L1PA8 LINE L1 -5 6482 2300 2235 117 0 3 chr1 77450851 77451160 -165213193 + AluY SINE Alu 2 309 -2 25170 133 14 40 chr1 77451160 77453392 -165210961 - L1PA8 LINE L1 -4187 2300 10 1953 231 32 45 chr1 77453515 77454143 -165210210 + MLT1E3 LTR MaLR 1 620 -4 329 271 10 10 chr1 77454218 77454314 -165210039 + GA-rich Low_complexity Low_complexity 3 98 0 883 229 6 0 chr1 77454332 77454507 -165209846 - MER5B DNA MER1_type -1 177 2 248 317 49 16 chr1 77455029 77455152 -165209201 + MIR SINE MIR 48 174 -88 3902 166 34 4 chr1 77455164 77455849 -165208504 + MER39 LTR ERV1 3 707 0 315 0 0 0 chr1 77455893 77455928 -165208425 + (TG)n Simple_repeat Simple_repeat 2 36 0 328 313 12 61 chr1 77456241 77456316 -165208037 - MIR SINE MIR -70 192 128 1980 70 47 44 chr1 77456316 77456614 -165207739 + AluY SINE Alu 1 299 -12 328 313 12 61 chr1 77456614 77456701 -165207652 - MIR SINE MIR -134 128 38 752 255 27 0 chr1 77457017 77457201 -165207152 - MER5A DNA MER1_type 0 189 1 290 307 30 0 chr1 77457272 77457373 -165206980 + MIR SINE MIR 3 106 -156 440 35 17 0 chr1 77457395 77457453 -165206900 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 946 289 114 2 chr1 77457535 77457940 -165206413 + LTR16A LTR ERVL 1 450 0 211 341 158 6 chr1 77458024 77458188 -165206165 - MIR SINE MIR -72 190 2 21 36 0 0 chr1 77458193 77458221 -165206132 + AT_rich Low_complexity Low_complexity 1 28 0 310 289 16 23 chr1 77459292 77459420 -165204933 + CT-rich Low_complexity Low_complexity 1 127 0 370 267 40 40 chr1 77459489 77459639 -165204714 + MIR SINE MIR 56 205 -57 2123 127 7 0 chr1 77459743 77460051 -165204302 - AluSq SINE Alu -2 311 2 346 265 36 108 chr1 77460211 77460377 -165203976 - MER5B DNA MER1_type 0 178 25 201 279 33 33 chr1 77460324 77460385 -165203968 + MER5A DNA MER1_type 113 173 -16 * 237 244 0 85 chr1 77460582 77460664 -165203689 + MIR SINE MIR 119 193 -69 252 0 0 0 chr1 77461255 77461283 -165203070 + (TTA)n Simple_repeat Simple_repeat 3 30 0 284 288 50 100 chr1 77461550 77461710 -165202643 + MER5A DNA MER1_type 38 189 0 483 224 0 82 chr1 77461554 77461688 -165202665 - MER5B DNA MER1_type -30 148 26 450 313 12 24 chr1 77461718 77461884 -165202469 + MER5A DNA MER1_type 1 164 -25 236 312 17 69 chr1 77462129 77462302 -165202051 + MIR SINE MIR 20 183 -79 189 172 47 0 chr1 77462355 77462419 -165201934 + GA-rich Low_complexity Low_complexity 2 68 0 229 231 58 0 chr1 77463662 77463714 -165200639 + MER5A DNA MER1_type 21 75 -114 302 294 62 68 chr1 77464410 77464556 -165199797 + MIR3 SINE MIR 60 204 -4 459 336 21 7 chr1 77464705 77464845 -165199508 - MIR SINE MIR -114 148 7 477 254 0 41 chr1 77465964 77466086 -165198267 + L2 LINE L2 3197 3313 0 231 266 31 0 chr1 77466588 77466652 -165197701 + L2 LINE L2 3248 3313 0 630 280 45 5 chr1 77466963 77467163 -165197190 + MLT1H LTR MaLR 2 209 -340 288 208 83 0 chr1 77467363 77467435 -165196918 + MLT1F1 LTR MaLR 487 564 -3 275 180 33 0 chr1 77468215 77468276 -165196077 - MER103 DNA DNA -48 118 56 197 262 16 16 chr1 77468419 77468480 -165195873 - MIR SINE MIR -65 143 83 679 301 96 13 chr1 77468967 77469206 -165195147 + MIR SINE MIR 2 260 -2 267 320 117 66 chr1 77469247 77469503 -165194850 - L2 LINE L2 0 3272 3004 199 301 73 24 chr1 77469703 77469826 -165194527 - L2 LINE L2 -459 2855 2727 8617 155 47 8 chr1 77469848 77471903 -165192450 - L1PA3 LINE L1 0 6155 4015 191 280 20 0 chr1 77472161 77472211 -165192142 + L2 LINE L2 3221 3271 -1 628 145 145 0 chr1 77472338 77472497 -165191856 - MER53 DNA DNA -4 185 4 191 289 356 0 chr1 77472855 77472945 -165191408 - L2 LINE L2 -4 3309 3188 197 122 49 0 chr1 77473081 77473122 -165191231 + (CATA)n Simple_repeat Simple_repeat 1 43 0 448 301 40 17 chr1 77473870 77474046 -165190307 - MIR SINE MIR -74 188 9 341 48 0 0 chr1 77474251 77474293 -165190060 - THE1A LTR MaLR 0 355 314 2741 13 0 0 chr1 77474293 77474593 -165189760 + AluYb8 SINE Alu 1 300 -18 2011 134 8 36 chr1 77524807 77525172 -165139181 + THE1A LTR MaLR 1 355 0 218 383 85 22 chr1 77525497 77525860 -165138493 + L2 LINE L2 2490 2875 -439 304 304 76 0 chr1 77526100 77526192 -165138161 + L2 LINE L2 3166 3264 -8 268 341 87 8 chr1 77526719 77526845 -165137508 + L2 LINE L2 2219 2354 -960 364 307 114 83 chr1 77527485 77527905 -165136448 + L2 LINE L2 2320 2752 -562 2289 89 0 0 chr1 77528705 77528998 -165135355 + AluSq SINE Alu 1 293 -20 227 275 115 75 chr1 77530193 77530393 -165133960 - MIR SINE MIR -1 261 54 218 319 28 64 chr1 77530552 77530693 -165133660 - L2 LINE L2 -219 3053 2918 1496 223 52 22 chr1 77530994 77531456 -165132897 - L1MB8 LINE L1 0 6178 5703 203 291 150 31 chr1 77531470 77531597 -165132756 + L2 LINE L2 3122 3263 -9 745 292 28 18 chr1 77531713 77531997 -165132356 + LTR16A LTR ERVL 160 446 -4 5165 108 261 75 chr1 77532133 77533573 -165130780 - pTR5 LTR ERV1 0 2438 584 1899 188 41 5 chr1 77533612 77534001 -165130352 + MER57A LTR ERV1 1 403 0 1590 250 66 34 chr1 77534827 77535386 -165128967 - MER77 LTR ERV1 0 605 29 352 281 18 18 chr1 77536219 77536333 -165128020 + CT-rich Low_complexity Low_complexity 4 117 0 330 355 9 0 chr1 77536334 77536444 -165127909 - L2 LINE L2 -10 3303 3193 2071 216 61 11 chr1 77537172 77537649 -165126704 - MLT1D LTR MaLR -1 504 4 341 298 15 44 chr1 77538995 77539117 -165125236 + ERVL LTR ERVL 4505 4629 -1135 2504 51 0 6 chr1 77539117 77539428 -165124925 + AluY SINE Alu 1 309 -2 341 298 15 44 chr1 77539428 77539516 -165124837 + ERVL LTR ERVL 4629 4793 -971 448 361 41 30 chr1 77539557 77539995 -165124358 + ERVL LTR ERVL 4843 5285 -369 225 0 0 0 chr1 77540837 77540862 -165123491 + (A)n Simple_repeat Simple_repeat 1 25 0 318 358 7 15 chr1 77541765 77541902 -165122451 - L2 LINE L2 0 3272 3137 308 340 57 13 chr1 77541927 77542086 -165122267 - MIR SINE MIR -31 231 66 194 313 62 0 chr1 77543593 77543673 -165120680 + L2 LINE L2 3227 3311 -2 * 256 255 98 4 chr1 77543672 77543757 -165120596 - MIR SINE MIR -93 115 21 4146 122 1 26 chr1 77545146 77545802 -165118551 - L1PA14 LINE L1 -1 6160 5521 311 336 26 9 chr1 77546140 77546256 -165118097 + MIR SINE MIR 40 157 -105 7624 147 10 8 chr1 77546258 77547555 -165116798 - HSMAR2 DNA Mariner -2 1300 2 4659 91 6 39 chr1 77547561 77548235 -165116118 - PABL_A LTR ERV1 -8 652 1 277 341 44 100 chr1 77548380 77548473 -165115880 + L2 LINE L2 2970 3067 -205 2263 77 0 27 chr1 77548473 77548773 -165115580 - AluY SINE Alu -13 298 7 277 341 44 100 chr1 77548773 77548999 -165115354 + L2 LINE L2 3067 3271 -1 259 230 115 11 chr1 77550623 77550710 -165113643 - MER103 DNA DNA -8 158 63 228 67 0 0 chr1 77551028 77551058 -165113295 + (A)n Simple_repeat Simple_repeat 1 30 0 2042 108 25 0 chr1 77551757 77552091 -165112262 + AluSp SINE Alu 1 341 0 316 313 123 28 chr1 77553377 77553556 -165110797 - L2 LINE L2 -190 3082 2887 3878 229 25 55 chr1 77553563 77554632 -165109721 - MER45B DNA AcHobo 0 1040 4 7017 184 192 6 chr1 77555706 77557324 -165107029 + L1M4c LINE L1 16 1934 -4450 469 304 71 0 chr1 77557711 77557895 -165106458 + MIR SINE MIR 53 249 -13 181 267 105 29 chr1 77559042 77559147 -165105206 - MIR SINE MIR -93 169 57 4566 266 89 15 chr1 77559570 77562016 -165102337 + L1M4c LINE L1 1985 4687 -1695 1588 156 44 73 chr1 77562016 77562400 -165101953 - THE1C LTR MaLR -2 373 1 4566 266 89 15 chr1 77562400 77562646 -165101707 + L1M4c LINE L1 4687 4913 -1469 397 346 39 45 chr1 77563094 77563452 -165100901 - MLT1H LTR MaLR -142 407 52 756 295 25 65 chr1 77564008 77564333 -165100020 + Charlie8 DNA MER1_type 1 1399 -1018 2175 99 26 29 chr1 77564574 77564887 -165099466 + AluSx SINE Alu 1 312 0 234 91 0 0 chr1 77566507 77566540 -165097813 + (TTA)n Simple_repeat Simple_repeat 3 35 0 217 393 90 0 chr1 77567411 77567533 -165096820 - L2 LINE L2 -586 2728 2596 279 265 10 0 chr1 77567540 77567628 -165096725 - MLT1F1 LTR MaLR 0 567 477 13898 188 8 17 chr1 77567628 77571639 -165092714 - L1PB1 LINE L1 -19 6132 2161 1459 248 96 44 chr1 77571641 77572100 -165092253 - MLT1F1 LTR MaLR -54 513 6 2065 154 5 52 chr1 77572116 77572519 -165091834 + MLT1B LTR MaLR 7 390 0 180 356 36 50 chr1 77572567 77572786 -165091567 + L3 LINE CR1 249 464 -1113 1401 196 14 25 chr1 77572859 77573144 -165091209 + AluJb SINE Alu 1 282 -30 207 0 0 0 chr1 77573147 77573170 -165091183 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 746 295 106 22 chr1 77573190 77573502 -165090851 - LTR16A LTR ERVL -78 372 35 180 389 74 25 chr1 77573605 77573849 -165090504 - MIR SINE MIR -4 258 3 * 789 306 62 39 chr1 77573849 77574228 -165090125 + L3 LINE CR1 552 939 -638 208 359 49 43 chr1 77574973 77575157 -165089196 - MIR SINE MIR -61 201 17 371 240 42 0 chr1 77577066 77577162 -165087191 + L2 LINE L2 1834 1933 -1381 1980 180 9 3 chr1 77577163 77577507 -165086846 - MLT1B LTR MaLR -2 388 43 401 279 116 7 chr1 77577509 77577656 -165086697 + L2 LINE L2 2082 2244 -1070 1625 162 99 0 chr1 77577659 77577961 -165086392 + MER44D DNA MER2_type 3 604 -5 1271 289 86 49 chr1 77578028 77578778 -165085575 + L2 LINE L2 2336 3119 -194 2147 146 39 0 chr1 77578779 77579136 -165085217 - L1PB3 LINE L1 -2 6152 5782 252 184 0 0 chr1 77579136 77579185 -165085168 + (TA)n Simple_repeat Simple_repeat 2 50 0 286 236 22 0 chr1 77579190 77579279 -165085074 - L1MC4 LINE L1 -1340 6702 6612 9953 197 29 20 chr1 77579299 77580354 -165083999 - L1PB3 LINE L1 -363 5791 4747 1753 154 27 0 chr1 77580354 77580653 -165083700 - AluSx SINE Alu -5 307 1 9953 197 29 20 chr1 77580653 77582325 -165082028 - L1PB3 LINE L1 -1407 4747 3032 1705 204 3 0 chr1 77582325 77582619 -165081734 - AluJb SINE Alu -17 295 1 9953 197 29 20 chr1 77582619 77582890 -165081463 - L1PB3 LINE L1 -3122 3032 2765 11943 146 23 5 chr1 77582891 77585727 -165078626 - L1PA10 LINE L1 -11 6214 3326 2032 167 13 3 chr1 77585759 77586077 -165078276 - L1PA10 LINE L1 -5883 321 1 343 106 30 0 chr1 77586940 77587006 -165077347 + CT-rich Low_complexity Low_complexity 1 68 0 307 341 73 0 chr1 77587263 77587386 -165076967 + L2 LINE L2 3136 3267 -5 489 313 43 23 chr1 77587480 77587736 -165076617 + MIR SINE MIR 1 261 -1 223 273 0 15 chr1 77587724 77587790 -165076563 + MIR SINE MIR 192 256 -6 * 24 0 0 0 chr1 77588238 77588262 -165076091 + AT_rich Low_complexity Low_complexity 1 24 0 305 217 43 0 chr1 77588686 77588755 -165075598 - MIR SINE MIR -69 193 122 298 309 28 51 chr1 77589030 77589208 -165075145 + L3 LINE CR1 1223 1396 -181 242 260 210 10 chr1 77589584 77589684 -165074669 - L2 LINE L2 0 3313 3194 42554 48 5 3 chr1 77590494 77596651 -165067702 + L1PA4 LINE L1 3 6155 0 691 335 83 21 chr1 77596743 77597451 -165066902 + L1MEd LINE L1 452 1203 -4916 248 281 86 50 chr1 77597518 77597796 -165066557 + L1MEd LINE L1 1361 1648 -4662 7327 149 24 36 chr1 77597919 77600336 -165064017 + L1MA8 LINE L1 3885 6288 -3 245 309 17 17 chr1 77600396 77600574 -165063779 + L1MEd LINE L1 3541 3718 -2411 339 267 25 0 chr1 77600586 77600706 -165063647 + L1MEd LINE L1 3639 3761 -2368 361 243 19 19 chr1 77600922 77601029 -165063324 + L1MEd LINE L1 4035 4141 -1988 245 167 0 0 chr1 77601080 77601122 -165063231 + HsTC2 DNA Tc2 1856 1897 -1 535 291 52 49 chr1 77601132 77601282 -165063071 + L1MEd LINE L1 4160 4308 -1821 1490 169 52 41 chr1 77601282 77601572 -165062781 + AluJo SINE Alu 3 295 -17 535 291 52 49 chr1 77601572 77601623 -165062730 + L1MEd LINE L1 4308 4357 -1772 1860 181 3 0 chr1 77601623 77601933 -165062420 + AluSx SINE Alu 1 311 -1 535 291 52 49 chr1 77601933 77602177 -165062176 + L1MEd LINE L1 4357 4607 -1522 711 286 114 71 chr1 77602207 77602769 -165061584 - MLT1G1 LTR MaLR 0 595 10 235 278 21 31 chr1 77602907 77603004 -165061349 + (TA)n Simple_repeat Simple_repeat 2 97 0 2223 96 44 44 chr1 77603076 77603440 -165060913 + THE1B LTR MaLR 1 364 0 468 222 26 0 chr1 77603454 77603607 -165060746 + (CATATA)n Simple_repeat Simple_repeat 3 159 0 260 200 14 14 chr1 77603615 77603685 -165060668 + L1MEd LINE L1 4918 4987 -1142 289 345 73 28 chr1 77604362 77604649 -165059704 - L2 LINE L2 -18 3295 2996 256 420 36 20 chr1 77605329 77605579 -165058774 - L2 LINE L2 -193 3079 2826 197 345 65 43 chr1 77605907 77606139 -165058214 - L2 LINE L2 -1164 2150 1914 279 143 36 0 chr1 77607168 77607224 -165057129 + L1M4 LINE L1 2635 2692 -3454 * 496 194 75 52 chr1 77607222 77607356 -165056997 - L1MC1 LINE L1 0 6402 6266 1870 148 7 0 chr1 77607410 77607693 -165056660 + AluSg SINE Alu 1 285 -25 3882 183 43 6 chr1 77607733 77608524 -165055829 + L1MD1 LINE L1 5423 6242 0 418 336 31 0 chr1 77608552 77608680 -165055673 - MLT1K LTR MaLR -454 134 3 2330 103 26 34 chr1 77608998 77609068 -165055285 - THE1C LTR MaLR 0 375 306 2370 95 0 0 chr1 77609068 77609374 -165054979 + AluY SINE Alu 2 307 -4 2330 103 26 34 chr1 77609374 77609681 -165054672 - THE1C LTR MaLR -69 306 1 369 277 87 51 chr1 77610219 77610414 -165053939 - MIR SINE MIR -16 246 45 195 100 0 0 chr1 77610777 77610807 -165053546 + (CA)n Simple_repeat Simple_repeat 2 31 0 252 0 0 0 chr1 77610991 77611019 -165053334 + (A)n Simple_repeat Simple_repeat 1 28 0 382 310 99 38 chr1 77611054 77611267 -165053086 - MIR SINE MIR -32 230 5 4191 222 13 12 chr1 77611456 77612879 -165051474 + L1MB5 LINE L1 4745 6168 -6 1053 186 85 32 chr1 77613598 77613845 -165050508 + MER44D DNA MER2_type 1 530 -79 408 155 0 0 chr1 77613853 77613924 -165050429 + (TG)n Simple_repeat Simple_repeat 2 72 0 595 217 9 0 chr1 77613936 77614051 -165050302 + MER44D DNA MER2_type 489 604 -1 225 359 85 0 chr1 77614172 77614278 -165050075 - L2 LINE L2 -4 3268 3154 450 279 67 77 chr1 77615314 77615915 -165048438 + L1MEd LINE L1 595 1189 -4930 1858 154 130 16 chr1 77615986 77616370 -165047983 - MSTA LTR MaLR 0 428 1 2393 57 3 3 chr1 77616561 77616862 -165047491 + AluY SINE Alu 1 301 -10 659 279 47 14 chr1 77616888 77617103 -165047250 + L1MEc LINE L1 53 274 -6122 564 296 79 45 chr1 77617098 77618007 -165046346 - L1MC1 LINE L1 -743 5472 4619 * 1090 159 0 39 chr1 77618053 77618235 -165046118 + AluJo SINE Alu 46 220 -92 1014 315 77 35 chr1 77618309 77619776 -165044577 - L1MC1 LINE L1 -1634 4581 3054 642 293 62 72 chr1 77619818 77620729 -165043624 - L1MC1 LINE L1 -3316 2899 2030 314 319 72 18 chr1 77620946 77621112 -165043241 - HAL1b LINE L1 -692 656 482 472 324 40 43 chr1 77621161 77621276 -165043077 - HAL1b LINE L1 -966 382 268 2304 103 3 0 chr1 77621276 77621587 -165042766 - AluSq SINE Alu -1 312 1 472 324 40 43 chr1 77621587 77621795 -165042558 - HAL1b LINE L1 -1080 268 60 2047 171 92 0 chr1 77622145 77622537 -165041816 + MSTC LTR MaLR 1 428 0 336 195 92 23 chr1 77623200 77623287 -165041066 - MER58B DNA MER1_type 0 341 249 821 239 56 9 chr1 77623355 77623568 -165040785 + MER58A DNA MER1_type 2 224 0 360 368 69 13 chr1 77623766 77623997 -165040356 - MIR SINE MIR -4 258 15 285 98 0 0 chr1 77624466 77624507 -165039846 + (CA)n Simple_repeat Simple_repeat 2 42 0 337 329 48 7 chr1 77626287 77626433 -165037920 + MIR SINE MIR 37 188 -74 242 393 89 5 chr1 77626632 77626856 -165037497 - L2 LINE L2 -1869 1445 1203 300 415 0 0 chr1 77627399 77627522 -165036831 + MIR SINE MIR 18 140 -122 321 304 152 11 chr1 77628070 77628254 -165036099 + L2 LINE L2 3083 3292 -21 198 176 0 0 chr1 77628717 77628768 -165035585 + T-rich Low_complexity Low_complexity 1 51 0 302 333 8 8 chr1 77628813 77628933 -165035420 - MLT1I LTR MaLR -219 190 71 1630 39 24 0 chr1 77629043 77629250 -165035103 - L1PA5 LINE L1 -7 6147 5936 405 295 184 19 chr1 77629265 77629410 -165034943 - MLT1J2 LTR MaLR -43 407 287 999 200 66 56 chr1 77629410 77629645 -165034708 + MER33 DNA MER1_type 2 244 -2341 2076 111 0 3 chr1 77629645 77629992 -165034361 - AluSx SINE Alu 0 346 1 999 200 66 56 chr1 77629992 77630074 -165034279 + MER33 DNA MER1_type 244 324 0 405 295 184 19 chr1 77630074 77630243 -165034110 - MLT1J2 LTR MaLR -163 287 41 226 25 25 50 chr1 77631493 77631533 -165032820 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 547 217 84 14 chr1 77631624 77631767 -165032586 - L2 LINE L2 0 3313 3161 2638 192 37 7 chr1 77632310 77632813 -165031540 - MLT2B1 LTR ERVL 0 663 3 202 341 124 0 chr1 77632895 77633024 -165031329 - MIR SINE MIR -70 192 48 663 280 34 0 chr1 77633807 77633982 -165030371 + MIR SINE MIR 66 246 -16 3642 32 9 0 chr1 77634436 77634874 -165029479 + L1PA5 LINE L1 5710 6151 -3 930 66 0 0 chr1 77634874 77634991 -165029362 + L1PA6 LINE L1 6026 6147 -7 525 245 46 13 chr1 77635529 77635680 -165028673 - MIR SINE MIR -30 232 77 287 214 0 51 chr1 77635984 77636082 -165028271 - L1MC4 LINE L1 -1339 6703 6611 546 255 222 0 chr1 77636082 77636235 -165028118 - MIR SINE MIR -70 192 6 235 295 13 26 chr1 77636353 77636431 -165027922 - L2 LINE L2 -10 3303 3227 1086 173 9 44 chr1 77638237 77638462 -165025891 + AluJb SINE Alu 86 302 -10 779 265 108 94 chr1 77639840 77640405 -165023948 - MLT1G LTR MaLR 0 590 37 285 274 55 0 chr1 77640431 77640504 -165023849 + MLT1E1 LTR MaLR 52 128 -465 1353 224 50 39 chr1 77640571 77640932 -165023421 + MLT1A2 LTR MaLR 4 368 -6 1170 243 36 71 chr1 77640940 77641371 -165022982 + MLT1E1 LTR MaLR 119 654 0 313 153 169 0 chr1 77641372 77641431 -165022922 - MLT1G LTR MaLR -523 72 4 22 35 0 0 chr1 77642023 77642052 -165022301 + AT_rich Low_complexity Low_complexity 1 29 0 628 279 88 18 chr1 77642281 77642507 -165021846 - MIR SINE MIR -15 247 6 948 256 79 74 chr1 77642582 77642988 -165021365 - LTR16A1 LTR ERVL -41 416 9 314 199 37 140 chr1 77642996 77643132 -165021221 - L3 LINE CR1 -92 1485 1364 185 328 57 68 chr1 77643139 77643316 -165021037 - L2 LINE L2 -290 2982 2808 994 230 20 0 chr1 77643638 77643834 -165020519 + MER58A DNA MER1_type 1 200 -24 427 189 0 0 chr1 77643822 77643896 -165020457 + MER58A DNA MER1_type 151 224 0 * 26 82 0 0 chr1 77645336 77645397 -165018956 + AT_rich Low_complexity Low_complexity 1 61 0 24 0 0 0 chr1 77645479 77645503 -165018850 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 77645543 77645566 -165018787 + AT_rich Low_complexity Low_complexity 1 23 0 371 359 114 27 chr1 77645664 77646076 -165018277 - MLT1K LTR MaLR -2 586 139 506 296 133 13 chr1 77646188 77646739 -165017614 + L1ME4a LINE L1 5500 6116 -5 262 262 0 16 chr1 77647684 77647745 -165016608 - L2 LINE L2 -67 3246 3187 1815 134 4 0 chr1 77647785 77648101 -165016252 - AluSp SINE Alu 0 357 41 522 79 0 0 chr1 77648465 77648541 -165015812 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 274 270 0 0 chr1 77648561 77648635 -165015718 + (TAAA)n Simple_repeat Simple_repeat 3 76 0 32 26 0 0 chr1 77649092 77649131 -165015222 + AT_rich Low_complexity Low_complexity 1 39 0 31 68 0 0 chr1 77649209 77649268 -165015085 + AT_rich Low_complexity Low_complexity 1 59 0 1041 181 6 6 chr1 77649341 77649571 -165014782 - AluSg/x SINE Alu 0 334 105 252 143 0 0 chr1 77649571 77649606 -165014747 - Alu SINE Alu -267 35 1 433 237 65 11 chr1 77649607 77649793 -165014560 - L1ME4a LINE L1 -213 5908 5713 241 295 45 45 chr1 77650004 77650160 -165014193 - MLT1L LTR MaLR -31 584 429 306 325 44 9 chr1 77650236 77650350 -165014003 - MLT1K LTR MaLR -289 299 182 180 111 0 0 chr1 77650504 77650531 -165013822 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 257 354 137 17 chr1 77650553 77650728 -165013625 + MIR SINE MIR 13 208 -54 1883 131 0 4 chr1 77651218 77651478 -165012875 + AluSx SINE Alu 14 272 -40 22 35 0 0 chr1 77651543 77651572 -165012781 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 77652569 77652592 -165011761 + AT_rich Low_complexity Low_complexity 1 23 0 1920 194 112 24 chr1 77653477 77653941 -165010412 + MLT1D LTR MaLR 1 505 0 289 351 24 11 chr1 77654105 77654287 -165010066 - MIR SINE MIR -73 135 7 2237 170 76 45 chr1 77655222 77655710 -165008643 + MLT1D LTR MaLR 3 505 0 908 93 8 0 chr1 77656071 77656200 -165008153 + L1PA7 LINE L1 6021 6150 -4 33 66 0 0 chr1 77656223 77656284 -165008069 + AT_rich Low_complexity Low_complexity 1 61 0 1334 162 0 9 chr1 77656897 77657107 -165007246 - AluSg/x SINE Alu -17 295 88 7133 129 26 10 chr1 77657114 77658193 -165006160 + THE1-int LTR MaLR 392 1487 -93 195 200 0 0 chr1 77660011 77660046 -165004307 - L2 LINE L2 -9 3263 3229 312 191 16 0 chr1 77660483 77660546 -165003807 + MLT1I LTR MaLR 322 385 -24 37 0 0 0 chr1 77661060 77661097 -165003256 + AT_rich Low_complexity Low_complexity 1 37 0 2147 112 3 13 chr1 77662077 77662380 -165001973 - AluSx SINE Alu -12 300 1 210 293 170 9 chr1 77662576 77662682 -165001671 + MER91C DNA MER1_type 1 123 -17 311 65 22 0 chr1 77663732 77663778 -165000575 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 182 0 18 chr1 77663806 77663861 -165000492 + T-rich Low_complexity Low_complexity 2 55 0 298 425 113 5 chr1 77664490 77664711 -164999642 - L2 LINE L2 -49 3223 2979 12608 179 31 48 chr1 77665394 77668877 -164995476 + L1M2 LINE L1 2324 5736 -1112 2199 87 38 0 chr1 77668877 77669164 -164995189 + AluSg SINE Alu 1 298 -12 12608 179 31 48 chr1 77669164 77669430 -164994923 + L1M2 LINE L1 5736 6005 -843 2976 201 110 11 chr1 77669493 77670158 -164994195 - L1M2b LINE L1 -6478 731 1 242 304 196 6 chr1 77670489 77670647 -164993706 + MIR SINE MIR 2 189 -73 321 293 142 8 chr1 77671292 77671459 -164992894 + MIR SINE MIR 5 190 -60 22 35 0 0 chr1 77671499 77671528 -164992825 + AT_rich Low_complexity Low_complexity 1 29 0 217 288 91 0 chr1 77671742 77671808 -164992545 - L2 LINE L2 0 3313 3242 495 316 24 6 chr1 77672327 77672495 -164991858 + L3 LINE CR1 1077 1247 -330 1487 196 59 12 chr1 77672500 77672841 -164991512 + MLT1A1 LTR MaLR 7 363 -2 232 258 76 0 chr1 77672841 77672907 -164991446 + L3 LINE CR1 1240 1310 -267 247 335 88 36 chr1 77672944 77673138 -164991215 + L2 LINE L2 2260 2463 -851 228 298 30 15 chr1 77673406 77673537 -164990816 - MER103 DNA DNA 0 166 34 259 277 181 0 chr1 77673712 77673795 -164990558 - L2 LINE L2 -8 3305 3208 180 111 0 0 chr1 77673775 77673802 -164990551 + L3 LINE CR1 1235 1261 -316 * 261 308 28 0 chr1 77673814 77673921 -164990432 + L2 LINE L2 2902 3011 -261 276 328 96 24 chr1 77673922 77674047 -164990306 + L2 LINE L2 3139 3272 0 314 245 64 0 chr1 77674746 77674840 -164989513 + L1MC5 LINE L1 7818 7917 -44 226 308 0 0 chr1 77674840 77674905 -164989448 + GA-rich Low_complexity Low_complexity 4 68 0 551 256 161 9 chr1 77675062 77675285 -164989068 - MIR SINE MIR -5 257 1 1469 66 0 5 chr1 77676008 77676205 -164988148 + L1P5 LINE L1 5579 5774 -377 1254 113 11 0 chr1 77676205 77676382 -164987971 + Charlie3 DNA MER1_type 2527 2705 -5 180 0 0 0 chr1 77676773 77676793 -164987560 + (A)n Simple_repeat Simple_repeat 1 20 0 748 189 0 0 chr1 77676869 77676991 -164987362 + FLAM_C SINE Alu 1 122 -11 1217 265 81 42 chr1 77678286 77679388 -164984965 + L1MCc LINE L1 1119 2449 -4673 2289 109 3 0 chr1 77679388 77679690 -164984663 + AluSq SINE Alu 1 303 -10 1217 265 81 42 chr1 77679690 77679932 -164984421 + L1MCc LINE L1 2449 2680 -4442 6778 153 12 2 chr1 77679954 77681055 -164983298 - Tigger1 DNA MER2_type -1 2417 1306 6304 153 42 27 chr1 77681061 77682216 -164982137 - Tigger1 DNA MER2_type -1246 1172 1 1256 265 28 20 chr1 77682245 77682704 -164981649 + L1MC4a LINE L1 6202 6613 -1195 * 2236 244 80 49 chr1 77682699 77683467 -164980886 + L1MC4a LINE L1 6856 7659 -149 2399 61 10 3 chr1 77683467 77683785 -164980568 - AluY SINE Alu 0 311 1 2236 244 80 49 chr1 77683785 77683940 -164980413 + L1MC4a LINE L1 7659 7808 0 237 280 40 73 chr1 77684255 77684321 -164980032 - L2 LINE L2 -518 2796 2729 1932 164 22 27 chr1 77684321 77684686 -164979667 - MLT1A1 LTR MaLR -2 363 1 237 280 40 73 chr1 77684686 77684769 -164979584 - L2 LINE L2 -585 2729 2652 312 281 0 0 chr1 77685062 77685119 -164979234 - L2 LINE L2 -12 3301 3245 3850 268 61 120 chr1 77685221 77685292 -164979061 - L2 LINE L2 -81 3232 3158 1819 156 0 40 chr1 77685292 77685594 -164978759 + AluSx SINE Alu 20 309 -3 3850 268 61 120 chr1 77685594 77686553 -164977800 - L2 LINE L2 -155 3158 2144 984 240 5 14 chr1 77686553 77686774 -164977579 - MER58A DNA MER1_type -5 219 1 3850 268 61 120 chr1 77686774 77688103 -164976250 - L2 LINE L2 -1169 2144 807 203 323 0 0 chr1 77688103 77688165 -164976188 - MIR SINE MIR -17 245 184 1694 155 52 16 chr1 77688642 77688952 -164975401 - MER2 DNA MER2_type -23 322 2 205 107 18 54 chr1 77688952 77689008 -164975345 + (TA)n Simple_repeat Simple_repeat 2 55 0 261 144 19 39 chr1 77689009 77689113 -164975240 + (TTATA)n Simple_repeat Simple_repeat 5 106 0 618 296 19 33 chr1 77690598 77690811 -164973542 - MIR SINE MIR -6 256 47 221 339 0 0 chr1 77690942 77691004 -164973349 + L2 LINE L2 3201 3262 -10 929 215 74 18 chr1 77691079 77691405 -164972948 - LTR37A LTR ERV1 -12 414 71 21 57 0 0 chr1 77691658 77691693 -164972660 + AT_rich Low_complexity Low_complexity 1 35 0 7187 54 18 0 chr1 77693478 77694618 -164969735 - L1PA7 LINE L1 0 6154 5007 24 0 0 0 chr1 77694844 77694868 -164969485 + AT_rich Low_complexity Low_complexity 1 24 0 226 273 0 15 chr1 77695316 77695382 -164968971 - MIR SINE MIR -6 256 192 * 472 318 42 17 chr1 77695370 77695606 -164968747 - MIR SINE MIR -1 261 20 307 341 73 0 chr1 77695720 77695843 -164968510 - L2 LINE L2 -5 3267 3136 326 61 61 0 chr1 77696100 77696166 -164968187 + GA-rich Low_complexity Low_complexity 1 70 0 308 250 25 12 chr1 77697650 77697730 -164966623 + L2 LINE L2 3183 3263 -9 2132 126 0 0 chr1 77698881 77699208 -164965145 + AluSx SINE Alu 1 327 0 508 333 0 0 chr1 77699316 77699451 -164964902 - L2 LINE L2 0 3313 3179 392 304 58 10 chr1 77699522 77699693 -164964660 + MIR3 SINE MIR 19 192 -36 219 234 65 78 chr1 77700815 77700892 -164963461 + MER5A DNA MER1_type 104 179 -10 180 179 0 0 chr1 77701178 77701217 -164963136 + (TG)n Simple_repeat Simple_repeat 1 39 0 449 315 136 0 chr1 77701697 77701910 -164962443 - MIR SINE MIR -14 248 7 242 275 58 0 chr1 77702443 77702512 -164961841 - MIR3 SINE MIR -31 177 105 24 32 0 0 chr1 77703044 77703075 -164961278 + AT_rich Low_complexity Low_complexity 1 31 0 934 128 7 0 chr1 77703094 77703243 -164961110 + L1MA5 LINE L1 6121 6270 -30 343 328 38 38 chr1 77703448 77703634 -164960719 - MER5A DNA MER1_type -1 188 3 3688 190 22 40 chr1 77703644 77703729 -164960624 - L1MA9 LINE L1 -2 6310 6225 1064 206 131 8 chr1 77703729 77703981 -164960372 + AluJb SINE Alu 2 284 -18 180 0 0 0 chr1 77703985 77704005 -164960348 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3688 190 22 40 chr1 77704005 77704686 -164959667 - L1MA9 LINE L1 -90 6222 5555 2175 123 27 27 chr1 77704686 77705059 -164959294 - THE1C LTR MaLR -2 373 1 3688 190 22 40 chr1 77705059 77705180 -164959173 - L1MA9 LINE L1 -757 5555 5433 1865 152 4 0 chr1 77705180 77705493 -164958860 - AluSx SINE Alu 0 318 5 426 260 182 7 chr1 77705544 77705698 -164958655 + MER5A DNA MER1_type 9 189 0 1716 188 38 11 chr1 77705716 77706088 -164958265 - MLT1B LTR MaLR -8 382 1 274 347 61 92 chr1 77706192 77707106 -164957247 + L2 LINE L2 2370 3265 -7 1299 258 108 87 chr1 77707943 77708915 -164955438 + L2 LINE L2 2316 3313 0 812 301 9 0 chr1 77709409 77709628 -164954725 - MIR SINE MIR -6 256 36 252 0 0 0 chr1 77710819 77710847 -164953506 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 360 43 0 0 chr1 77710846 77710892 -164953461 + (GA)n Simple_repeat Simple_repeat 1 46 0 563 166 22 36 chr1 77711665 77711804 -164952549 + MIR SINE MIR 116 252 -10 373 250 193 23 chr1 77712640 77712752 -164951601 - MIR SINE MIR -10 252 160 1186 192 54 96 chr1 77712752 77713138 -164951215 + MLT1A2 LTR MaLR 1 370 -4 373 250 193 23 chr1 77713138 77713201 -164951152 - MIR SINE MIR -102 160 47 219 36 0 0 chr1 77713239 77713267 -164951086 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 327 296 74 45 chr1 77713601 77713777 -164950576 + L2 LINE L2 2078 2258 -1056 1996 144 121 23 chr1 77713856 77714244 -164950109 + MSTA LTR MaLR 3 428 0 9506 133 12 37 chr1 77714246 77715864 -164948489 + MSTA-int LTR MaLR 3 1580 0 1746 141 193 17 chr1 77715864 77716226 -164948127 + MSTA LTR MaLR 1 426 -2 44 56 0 0 chr1 77716390 77716462 -164947891 + AT_rich Low_complexity Low_complexity 1 72 0 214 232 37 0 chr1 77716477 77716518 -164947835 + (TTAAA)n Simple_repeat Simple_repeat 1 39 -46 12294 131 48 2 chr1 77716518 77717108 -164947245 + L1PA10 LINE L1 3237 3798 -2370 2069 133 0 7 chr1 77717108 77717416 -164946937 + AluSx SINE Alu 1 306 -6 12294 131 48 2 chr1 77717416 77719742 -164944611 + L1PA10 LINE L1 3798 6164 -4 214 232 37 0 chr1 77719742 77719782 -164944571 + (TTAAA)n Simple_repeat Simple_repeat 39 85 0 655 305 72 47 chr1 77719786 77720147 -164944206 - L2 LINE L2 -6 3307 2938 227 237 53 40 chr1 77720305 77720381 -164943972 + MIR SINE MIR 126 202 -60 890 187 43 176 chr1 77720381 77720916 -164943437 + MLT2C2 LTR ERVL 1 464 0 21 36 0 0 chr1 77720945 77720973 -164943380 + AT_rich Low_complexity Low_complexity 1 28 0 321 299 37 30 chr1 77721155 77721289 -164943064 + L2 LINE L2 3179 3313 0 392 275 81 57 chr1 77721680 77721891 -164942462 - MLT1I LTR MaLR -192 217 2 477 293 73 12 chr1 77722497 77722743 -164941610 + MIR SINE MIR 2 262 0 439 284 53 9 chr1 77722810 77722969 -164941384 - MIR SINE MIR -57 205 35 4466 95 14 0 chr1 77723544 77724175 -164940178 - L1PA8A LINE L1 -1 6130 5491 5159 118 8 3 chr1 77724175 77725094 -164939259 + L1PA8A LINE L1 4576 5496 -635 353 268 82 0 chr1 77725101 77725198 -164939155 - MIR SINE MIR -110 152 48 374 316 0 50 chr1 77725374 77725513 -164938840 + L2 LINE L2 3182 3313 0 647 309 54 44 chr1 77725588 77725886 -164938467 + MLT1H LTR MaLR 3 303 -246 278 235 84 42 chr1 77725916 77726035 -164938318 + MLT1H LTR MaLR 428 551 -16 21 57 0 0 chr1 77726505 77726540 -164937813 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 77727394 77727422 -164936931 + AT_rich Low_complexity Low_complexity 1 28 0 286 264 128 24 chr1 77727504 77727629 -164936724 + MIR SINE MIR 9 146 -116 539 160 0 20 chr1 77727797 77727897 -164936456 + MER4A LTR ERV1 1 98 -566 1620 122 174 72 chr1 77727897 77728258 -164936095 + MER4A LTR ERV1 261 658 -6 363 202 101 55 chr1 77729177 77729286 -164935067 - L2 LINE L2 -2 3311 3198 276 248 119 10 chr1 77729303 77729404 -164934949 + L2 LINE L2 3186 3297 -16 2176 107 10 0 chr1 77729618 77729909 -164934444 + AluSg SINE Alu 1 294 -16 315 0 0 0 chr1 77730601 77730636 -164933717 + (TG)n Simple_repeat Simple_repeat 2 36 0 196 341 52 38 chr1 77731438 77731649 -164932704 + L2 LINE L2 2840 3053 -219 724 208 12 102 chr1 77731970 77732122 -164932231 - L1ME LINE L1 -5842 228 105 2042 138 12 6 chr1 77732122 77732463 -164931890 - L1PA13 LINE L1 -11 6152 5810 724 208 12 102 chr1 77732463 77732555 -164931798 - L1ME LINE L1 -5965 105 6 274 285 144 25 chr1 77732945 77733752 -164930601 - L1MEd LINE L1 -3108 3021 2119 523 314 70 65 chr1 77734086 77734439 -164929914 - HAL1 LINE L1 -744 1763 1404 2444 56 0 0 chr1 77734439 77734747 -164929606 - AluY SINE Alu 0 308 1 523 314 70 65 chr1 77734747 77734789 -164929564 - HAL1 LINE L1 -1103 1404 1364 309 285 88 57 chr1 77734818 77735089 -164929264 - L1MEd LINE L1 -4902 1217 929 2732 114 24 7 chr1 77735089 77735510 -164928843 + MSTA LTR MaLR 1 428 0 309 285 88 57 chr1 77735510 77735624 -164928729 - L1MEd LINE L1 -5190 929 820 260 256 149 8 chr1 77736010 77736131 -164928222 - L1MEd LINE L1 -5964 155 18 552 315 139 39 chr1 77736140 77736943 -164927410 - L1MEd LINE L1 -5233 886 3 3477 280 101 33 chr1 77737557 77739051 -164925302 + L2 LINE L2 1431 3025 -288 222 37 0 0 chr1 77739054 77739081 -164925272 + (T)n Simple_repeat Simple_repeat 1 27 0 41156 31 36 15 chr1 77739084 77741583 -164922770 - L1HS LINE L1 0 6155 3710 229 244 12 58 chr1 77741583 77741669 -164922684 + MSTB2 LTR MaLR 136 217 -240 41156 31 36 15 chr1 77741669 77745112 -164919241 - L1HS LINE L1 -2445 3710 1 646 298 102 44 chr1 77745113 77745388 -164918965 + L2 LINE L2 3023 3313 0 196 316 35 0 chr1 77745519 77745576 -164918777 + L2 LINE L2 3014 3072 -200 473 249 48 35 chr1 77746549 77746778 -164917575 - MER20B DNA MER1_type -5 778 547 2193 142 11 6 chr1 77746836 77747189 -164917164 + THE1A LTR MaLR 1 355 0 11134 106 21 1 chr1 77747189 77748732 -164915621 + THE1A-int LTR MaLR 1 1575 -5 1992 153 14 8 chr1 77748736 77749089 -164915264 + THE1A LTR MaLR 1 355 0 373 298 65 56 chr1 77749274 77749489 -164914864 - MIR SINE MIR -17 245 29 180 304 43 29 chr1 77749503 77749572 -164914781 + L2 LINE L2 3239 3308 -5 204 40 0 0 chr1 77750637 77750662 -164913691 + (T)n Simple_repeat Simple_repeat 1 25 0 1338 217 15 21 chr1 77751458 77751790 -164912563 - LTR37A LTR ERV1 -20 406 77 296 308 9 106 chr1 77751830 77752057 -164912296 + MIR SINE MIR 28 232 -30 330 306 163 25 chr1 77752069 77752229 -164912124 - MIR SINE MIR 0 262 81 27 49 0 0 chr1 77752872 77752913 -164911440 + AT_rich Low_complexity Low_complexity 1 41 0 2429 66 0 7 chr1 77752992 77753295 -164911058 - AluY SINE Alu -10 301 1 2269 80 3 10 chr1 77754043 77754367 -164909986 + AluSp SINE Alu 1 313 0 362 301 72 33 chr1 77755013 77755166 -164909187 + MIR SINE MIR 13 171 -91 408 261 174 16 chr1 77755196 77755380 -164908973 - MIR SINE MIR -19 243 31 1057 250 29 0 chr1 77755597 77755837 -164908516 + MIR SINE MIR 12 258 -4 309 308 14 0 chr1 77756136 77756279 -164908074 - MER103 DNA DNA -9 157 13 1396 192 92 55 chr1 77756634 77757014 -164907339 + MSTD LTR MaLR 3 396 0 8119 261 53 9 chr1 77759485 77759644 -164904709 + L1ME LINE L1 2113 2264 -3882 2370 70 0 52 chr1 77759644 77759972 -164904381 + AluY SINE Alu 1 311 0 8119 261 53 9 chr1 77759972 77761677 -164902676 + L1ME LINE L1 2264 4156 -1990 1704 186 28 0 chr1 77761677 77761967 -164902386 + AluJb SINE Alu 3 300 -12 8119 261 53 9 chr1 77761967 77763061 -164901292 + L1ME LINE L1 4156 5201 -945 17802 157 26 26 chr1 77763073 77765688 -164898665 + L1PB1 LINE L1 1 2615 -4252 2371 90 0 19 chr1 77765688 77765999 -164898354 - AluY SINE Alu -6 305 1 17802 157 26 26 chr1 77765999 77769860 -164894493 + L1PB1 LINE L1 2615 6508 -359 1113 59 2 0 chr1 77769860 77770069 -164894284 + (TA)n Simple_repeat Simple_repeat 1 165 0 17802 157 26 26 chr1 77770069 77770255 -164894098 + L1PB1 LINE L1 6508 6693 -174 216 130 74 0 chr1 77770257 77770311 -164894042 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 2370 113 25 0 chr1 77770313 77770676 -164893677 - L1P5 LINE L1 -362 5789 5418 2420 105 11 3 chr1 77770726 77771103 -164893250 + L1PB1 LINE L1 5791 6170 0 356 233 11 0 chr1 77771117 77771207 -164893146 + L1ME LINE L1 5188 5278 -868 2042 160 38 26 chr1 77771250 77771676 -164892677 + L1ME LINE L1 5358 5788 -378 345 267 173 94 chr1 77771764 77772063 -164892290 - MLT1L LTR MaLR -198 417 95 271 242 161 67 chr1 77772063 77772212 -164892141 - MER69A DNA AcHobo 0 177 15 287 330 34 0 chr1 77772619 77772707 -164891646 + MIR SINE MIR 65 155 -107 604 348 47 21 chr1 77773367 77773603 -164890750 - MIR SINE MIR -12 250 9 539 289 84 11 chr1 77774378 77774568 -164889785 + MIR SINE MIR 59 262 0 424 242 50 0 chr1 77774693 77774792 -164889561 - MIR SINE MIR -95 167 64 1758 149 27 56 chr1 77774956 77775331 -164889022 - THE1B LTR MaLR 0 364 1 547 362 77 42 chr1 77775377 77775808 -164888545 + L2 LINE L2 2827 3272 0 552 252 16 0 chr1 77776146 77776273 -164888080 + L3 LINE CR1 426 554 -1023 225 324 162 0 chr1 77776530 77776666 -164887687 + MIR SINE MIR 11 168 -94 9042 96 25 2 chr1 77776785 77778043 -164886310 - HSMAR1 DNA Mariner 0 1287 1 502 323 0 0 chr1 77778107 77778234 -164886119 + L2 LINE L2 3146 3272 0 304 328 99 76 chr1 77778286 77778731 -164885622 + L2 LINE L2 2848 3302 -11 813 301 48 30 chr1 77778803 77779239 -164885114 + MLT1J1 LTR MaLR 1 444 -2 5023 158 12 15 chr1 77779249 77780305 -164884048 + L1PB4 LINE L1 5100 6155 -1 213 339 0 0 chr1 77780305 77780364 -164883989 + L3 LINE CR1 1240 1298 -279 923 190 56 0 chr1 77780390 77780569 -164883784 + MER5A DNA MER1_type 1 189 0 309 288 54 18 chr1 77780600 77780711 -164883642 + MIR SINE MIR 79 193 -69 216 309 15 0 chr1 77781053 77781121 -164883232 + MIR SINE MIR 189 257 -5 468 301 8 8 chr1 77781127 77781250 -164883103 + L2 LINE L2 3190 3312 -1 512 128 0 0 chr1 77781429 77781507 -164882846 - MER5A DNA MER1_type -80 109 32 1332 231 77 33 chr1 77781701 77782311 -164882042 - L1MC5 LINE L1 -36 7925 7289 246 330 27 9 chr1 77783024 77783136 -164881217 + L2 LINE L2 3200 3313 0 2529 94 27 19 chr1 77784615 77784987 -164879366 + THE1C LTR MaLR 1 375 0 9514 115 42 38 chr1 77784987 77786560 -164877793 + THE1C-int LTR MaLR 1 1580 0 2405 108 32 19 chr1 77786560 77786930 -164877423 + THE1C LTR MaLR 1 375 0 230 276 0 0 chr1 77786966 77787024 -164877329 + MARNA DNA Mariner 344 401 -185 523 247 78 6 chr1 77787242 77787408 -164876945 + L2 LINE L2 48 225 -3089 1596 202 39 36 chr1 77787410 77787767 -164876586 - MLT1A1 LTR MaLR 0 365 8 1639 309 119 15 chr1 77787777 77788558 -164875795 + L2 LINE L2 223 1084 -2230 191 448 0 9 chr1 77788491 77788596 -164875757 + MIR SINE MIR 49 152 -56 * 543 267 37 12 chr1 77788613 77788774 -164875579 - MIR SINE MIR 0 262 98 284 192 0 41 chr1 77789199 77789272 -164875081 + MER116 DNA Mariner 9 78 -2 28 29 0 0 chr1 77789968 77790003 -164874350 + AT_rich Low_complexity Low_complexity 1 35 0 228 272 86 25 chr1 77790043 77790124 -164874229 + L2 LINE L2 3184 3269 -3 300 27 0 0 chr1 77790591 77790628 -164873725 + (CA)n Simple_repeat Simple_repeat 2 38 0 1244 301 31 46 chr1 77790644 77791229 -164873124 + L1PB4 LINE L1 1 602 -4748 2703 266 44 33 chr1 77791698 77792483 -164871870 + L1PB4 LINE L1 827 1601 -4749 1413 209 0 26 chr1 77792483 77792602 -164871751 + AluJo SINE Alu 1 122 -190 2510 58 0 0 chr1 77792602 77792896 -164871457 + AluY SINE Alu 1 294 -17 1413 209 0 26 chr1 77792896 77793083 -164871270 + AluJo SINE Alu 122 299 -13 2703 266 44 33 chr1 77793083 77794454 -164869899 + L1PB4 LINE L1 1601 2697 -3653 626 196 49 0 chr1 77794438 77794581 -164869772 + L1MA7 LINE L1 5644 5793 -498 * 1776 173 15 24 chr1 77794588 77794924 -164869429 - MER7A DNA MER2_type -13 333 3 2376 166 30 24 chr1 77794924 77795429 -164868924 + L1MA7 LINE L1 5782 6289 -2 1783 247 72 53 chr1 77795652 77796188 -164868165 - MLT1E1 LTR MaLR 0 654 130 2109 161 26 3 chr1 77796188 77796567 -164867786 + MLT1B LTR MaLR 1 388 -2 2123 151 25 6 chr1 77796573 77796930 -164867423 - THE1B LTR MaLR 0 364 1 1783 247 72 53 chr1 77796930 77797009 -164867344 - MLT1E1 LTR MaLR -528 126 20 710 244 30 92 chr1 77797128 77797431 -164866922 + MLT1I LTR MaLR 118 401 -8 244 176 29 0 chr1 77798544 77798612 -164865741 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 410 319 69 79 chr1 77799512 77800108 -164864245 + L2 LINE L2 2466 3064 -208 1620 187 60 11 chr1 77800679 77801027 -164863326 + MLT1A1 LTR MaLR 1 365 0 261 222 0 0 chr1 77801341 77801395 -164862958 - 5S rRNA rRNA -63 58 5 774 259 131 8 chr1 77852317 77852553 -164811800 - LTR16A LTR ERVL -170 280 16 25 0 0 0 chr1 77852725 77852750 -164811603 + AT_rich Low_complexity Low_complexity 1 25 0 661 287 137 26 chr1 77853400 77854242 -164810111 - L1M4 LINE L1 -1594 4552 3618 692 299 52 32 chr1 77854883 77855227 -164809126 + LTR40a LTR ERVL 118 468 -51 200 208 9 75 chr1 77856109 77856215 -164808138 + T-rich Low_complexity Low_complexity 2 100 0 24 32 0 0 chr1 77856901 77856932 -164807421 + AT_rich Low_complexity Low_complexity 1 31 0 660 205 0 24 chr1 77856932 77857059 -164807294 - FLAM_C SINE Alu -8 125 2 9455 215 19 26 chr1 77857228 77858588 -164805765 + L1PB4 LINE L1 3189 4556 -1804 2053 132 7 0 chr1 77858588 77858875 -164805478 + AluSx SINE Alu 6 294 -18 9455 215 19 26 chr1 77858875 77860713 -164803640 + L1PB4 LINE L1 4556 6356 -4 954 232 107 12 chr1 77860723 77861068 -164803285 + L1MEc LINE L1 1930 2307 -4089 1860 219 41 48 chr1 77861273 77861756 -164802597 - MLT1D LTR MaLR 0 505 26 1497 230 127 82 chr1 77861997 77862532 -164801821 + MLT1F1 LTR MaLR 9 567 0 3921 81 34 11 chr1 77863939 77864504 -164799849 - L1PA11 LINE L1 -1 6173 5596 2204 157 22 0 chr1 77864504 77864860 -164799493 - THE1B LTR MaLR 0 364 1 10546 101 28 41 chr1 77864860 77865175 -164799178 - THE1B-int LTR MaLR 0 1580 1262 7014 58 7 4 chr1 77865175 77866205 -164798148 - L1PA6 LINE L1 0 6154 5123 10546 101 28 41 chr1 77866205 77867490 -164796863 - THE1B-int LTR MaLR -318 1262 1 2054 177 22 0 chr1 77867490 77867846 -164796507 - THE1B LTR MaLR 0 364 1 19580 210 26 26 chr1 77867846 77873982 -164790371 - L1P4 LINE L1 -574 7038 7 21 57 0 0 chr1 77873989 77874024 -164790329 + AT_rich Low_complexity Low_complexity 1 35 0 586 129 0 0 chr1 77874334 77874419 -164789934 + MSTB LTR MaLR 1 85 -343 1301 176 34 26 chr1 77874427 77874660 -164789693 + MSTB LTR MaLR 192 426 0 1564 222 0 14 chr1 77874719 77875016 -164789337 - AluJb SINE Alu -19 293 1 1226 169 0 0 chr1 77875017 77875218 -164789135 + MER3 DNA MER1_type 9 209 0 192 250 132 13 chr1 77876479 77876555 -164787798 + MIR SINE MIR 107 191 -71 2251 19 4 0 chr1 77876565 77876826 -164787527 + L1PA5 LINE L1 5882 6143 -11 21 0 0 0 chr1 77876826 77876847 -164787506 + AT_rich Low_complexity Low_complexity 1 21 0 877 217 43 0 chr1 77876936 77877143 -164787210 - L1ME2 LINE L1 -244 5920 5705 216 224 0 26 chr1 77877143 77877219 -164787134 + A-rich Low_complexity Low_complexity 1 74 0 262 277 62 0 chr1 77877453 77877518 -164786835 + MER58C DNA MER1_type 7 75 -140 328 158 69 89 chr1 77877594 77877695 -164786658 + MER58C DNA MER1_type 117 215 0 532 173 36 0 chr1 77878824 77878934 -164785419 - MER5A DNA MER1_type -74 115 2 630 169 52 74 chr1 77879708 77879939 -164784414 - MER69 DNA AcHobo 0 2526 2301 293 235 0 0 chr1 77879947 77880015 -164784338 - MER69 DNA AcHobo -421 2105 2038 * 1463 284 40 11 chr1 77880012 77880466 -164783887 - MER69 DNA AcHobo -586 640 174 1715 156 3 48 chr1 77880512 77880827 -164783526 + AluJo SINE Alu 2 302 -10 186 133 0 0 chr1 77880828 77880858 -164783495 + (TA)n Simple_repeat Simple_repeat 2 31 0 343 276 61 0 chr1 77880858 77880956 -164783397 - L1MC4 LINE L1 -1339 6703 6600 210 174 0 0 chr1 77880979 77881025 -164783328 + (TA)n Simple_repeat Simple_repeat 1 46 0 432 239 106 0 chr1 77881027 77881140 -164783213 - MER69 DNA AcHobo -2401 125 1 226 342 111 8 chr1 77881196 77881313 -164783040 + MIR SINE MIR 17 145 -63 257 236 0 0 chr1 77881386 77881441 -164782912 + MLT1A1 LTR MaLR 12 66 -299 1477 90 0 38 chr1 77881441 77881653 -164782700 + AluSg/x SINE Alu 102 305 -5 902 151 72 12 chr1 77881653 77881819 -164782534 + MLT1A1 LTR MaLR 190 365 0 349 299 24 24 chr1 77882995 77883122 -164781231 - L2 LINE L2 -1 3312 3186 231 203 0 0 chr1 77883356 77883415 -164780938 + A-rich Low_complexity Low_complexity 1 59 0 395 285 11 73 chr1 77884488 77884667 -164779686 - MIR SINE MIR 0 262 95 9167 210 14 7 chr1 77884838 77887710 -164776643 - L1PA15 LINE L1 -2 6814 3914 5206 241 52 20 chr1 77887716 77887864 -164776489 - L1PA15 LINE L1 -3003 3794 3652 1910 157 37 0 chr1 77887864 77888163 -164776190 - AluSx SINE Alu -2 310 1 5206 241 52 20 chr1 77888163 77890395 -164773958 - L1PA15 LINE L1 -3145 3652 1296 36 23 0 0 chr1 77891191 77891234 -164773119 + AT_rich Low_complexity Low_complexity 1 43 0 211 331 15 59 chr1 77891394 77891530 -164772823 + MIR SINE MIR 19 148 -114 607 279 173 10 chr1 77891605 77891813 -164772540 + MIR SINE MIR 6 247 -15 468 263 74 29 chr1 77891784 77891814 -164772539 - MIR SINE MIR -33 229 202 * 198 0 0 0 chr1 77891814 77891836 -164772517 + (ATG)n Simple_repeat Simple_repeat 2 23 0 468 263 74 29 chr1 77891836 77891980 -164772373 - MIR SINE MIR -60 202 47 1792 250 69 25 chr1 77892402 77892970 -164771383 + MLT1E LTR MaLR 1 593 0 214 374 0 0 chr1 77893081 77893164 -164771189 + L2 LINE L2 3104 3186 -86 2048 131 0 13 chr1 77893737 77894042 -164770311 + AluSx SINE Alu 1 301 -11 245 400 35 0 chr1 77894429 77894544 -164769809 + MIR3 SINE MIR 15 133 -75 314 352 88 0 chr1 77898343 77898468 -164765885 + L2 LINE L2 3136 3271 -1 26 0 0 0 chr1 77899128 77899154 -164765199 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr1 77899219 77899246 -164765107 + AT_rich Low_complexity Low_complexity 1 27 0 1706 123 60 76 chr1 77900170 77900551 -164763802 + THE1C LTR MaLR 1 375 0 328 200 43 0 chr1 77900719 77900789 -164763564 + Tigger2 DNA MER2_type 1 73 -2645 815 257 17 11 chr1 77900822 77900997 -164763356 - MER8 DNA MER2_type -62 177 2 632 196 49 0 chr1 77900997 77901140 -164763213 + L1MDa LINE L1 1285 1434 -5106 1919 197 55 5 chr1 77901143 77901524 -164762829 + Tigger7 DNA MER2_type 6 405 -328 2225 173 16 0 chr1 77901528 77901916 -164762437 - MER57A LTR ERV1 -9 394 1 650 134 25 8 chr1 77901916 77902034 -164762319 + Tigger7 DNA MER2_type 402 521 -212 494 202 11 0 chr1 77902034 77902123 -164762230 + Tigger7 DNA MER2_type 2395 2484 -3 2074 229 64 33 chr1 77902132 77902869 -164761484 + L1MDa LINE L1 1438 2208 -4332 226 288 116 41 chr1 77903192 77903338 -164761015 + L2 LINE L2 2917 3073 -199 242 242 83 42 chr1 77903595 77903715 -164760638 - L2 LINE L2 -91 3222 3098 279 311 136 0 chr1 77903898 77904001 -164760352 + L2 LINE L2 3178 3294 -19 621 281 65 4 chr1 77904394 77904564 -164759789 - MIR3 SINE MIR -10 198 22 1680 162 6 56 chr1 77907011 77907332 -164757021 - AluJb SINE Alu -7 305 1 5028 134 66 88 chr1 77908177 77908851 -164755502 + MER4C-int LTR ERV1 2740 3373 -3225 1569 176 7 29 chr1 77908851 77909158 -164755195 + AluJb SINE Alu 1 300 -12 5028 134 66 88 chr1 77909158 77909786 -164754567 + MER4C-int LTR ERV1 3373 4013 -2585 1051 140 0 0 chr1 77909809 77909966 -164754387 - Tigger1 DNA MER2_type -182 2236 2080 1542 133 24 0 chr1 77909966 77910221 -164754132 - L1PA13 LINE L1 -1 6162 5902 11464 138 54 44 chr1 77910221 77912517 -164751836 + MER4C-int LTR ERV1 4000 6320 -278 198 191 0 0 chr1 77912517 77912559 -164751794 + (TA)n Simple_repeat Simple_repeat 1 42 0 1474 142 29 55 chr1 77912560 77912869 -164751484 + MER4C-int LTR ERV1 6298 6598 0 2537 101 94 30 chr1 77912878 77913019 -164751334 + MER4C LTR ERV1 4 134 -331 2307 87 3 0 chr1 77913019 77913319 -164751034 + AluSq SINE Alu 1 301 -12 2537 101 94 30 chr1 77913319 77913611 -164750742 + MER4C LTR ERV1 134 465 0 2418 166 7 14 chr1 77913927 77914356 -164749997 - MSTB LTR MaLR 0 426 1 2066 119 3 23 chr1 77914956 77915259 -164749094 + AluSx SINE Alu 1 297 -15 457 269 87 74 chr1 77915675 77915898 -164748455 + HAL1 LINE L1 1010 1239 -1268 2797 9 0 6 chr1 77915898 77916213 -164748140 + AluYb8 SINE Alu 1 313 -5 457 269 87 74 chr1 77916213 77916287 -164748066 + HAL1 LINE L1 1239 1311 -1196 507 209 96 0 chr1 77916467 77916582 -164747771 - L2 LINE L2 0 3313 3188 13897 164 41 10 chr1 77916709 77922013 -164742340 - L1PB1 LINE L1 0 6867 1394 936 205 5 0 chr1 77922016 77922211 -164742142 - L1PB1 LINE L1 -6666 197 2 386 195 130 0 chr1 77922230 77922307 -164742046 - THE1B LTR MaLR -83 281 195 289 250 20 50 chr1 77922386 77922486 -164741867 - MLT1J LTR MaLR -67 444 348 237 159 0 0 chr1 77922522 77922566 -164741787 + (CA)n Simple_repeat Simple_repeat 2 45 0 223 305 98 0 chr1 77922569 77922651 -164741702 + MER5A DNA MER1_type 99 188 -1 186 71 0 0 chr1 77924116 77924144 -164740209 + (CAGCC)n Simple_repeat Simple_repeat 4 31 0 244 287 64 11 chr1 77925040 77925134 -164739219 + MIR SINE MIR 75 173 -89 342 256 58 36 chr1 77925186 77925323 -164739030 - MIR SINE MIR -72 190 51 554 230 62 57 chr1 77925510 77925719 -164738634 - MIR SINE MIR -51 211 2 199 299 30 0 chr1 77925737 77925804 -164738549 + L2 LINE L2 3155 3223 -49 616 239 62 17 chr1 77925821 77925997 -164738356 + MIR SINE MIR 27 210 -52 2335 85 3 0 chr1 77926215 77926510 -164737843 - AluSp SINE Alu -17 296 1 1706 134 75 8 chr1 77927373 77927641 -164736712 + AluSx SINE Alu 3 288 -24 346 346 46 0 chr1 77927681 77927811 -164736542 - MIR SINE MIR -10 252 117 1495 127 0 0 chr1 77928733 77928946 -164735407 - AluJb SINE Alu -99 213 1 552 242 73 23 chr1 77928957 77929217 -164735136 + L1M4 LINE L1 4384 4656 -1490 1505 167 78 25 chr1 77929314 77929595 -164734758 + AluJb SINE Alu 1 296 -16 3616 151 43 4 chr1 77929794 77930678 -164733675 - L1PA13 LINE L1 -607 5554 4649 3633 121 40 0 chr1 77930679 77931251 -164733102 + L1PA13 LINE L1 5566 6160 -3 289 333 76 0 chr1 77933275 77933380 -164730973 - L2 LINE L2 -5 3308 3196 234 241 19 0 chr1 77934647 77934701 -164729652 + (TA)n Simple_repeat Simple_repeat 2 56 0 369 0 0 0 chr1 77934845 77934886 -164729467 + (TG)n Simple_repeat Simple_repeat 2 42 0 2170 123 120 26 chr1 77935260 77935651 -164728702 - MSTA LTR MaLR 0 428 1 24 32 0 0 chr1 77936426 77936457 -164727896 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr1 77936572 77936599 -164727754 + (TG)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr1 77936800 77936826 -164727527 + AT_rich Low_complexity Low_complexity 1 26 0 306 250 114 11 chr1 77937070 77937158 -164727195 + MIR SINE MIR 49 145 -63 25 65 0 0 chr1 77937594 77937640 -164726713 + AT_rich Low_complexity Low_complexity 1 46 0 1349 306 69 28 chr1 77937955 77938534 -164725819 - MER21B LTR ERV1 -260 603 1 430 263 70 49 chr1 77941104 77941347 -164723006 - L2 LINE L2 -938 2376 2129 279 0 0 0 chr1 77941479 77941510 -164722843 + (TG)n Simple_repeat Simple_repeat 1 31 0 1671 185 3 13 chr1 77941940 77942242 -164722111 - AluJo SINE Alu -13 299 1 326 290 118 35 chr1 77942657 77942912 -164721441 - MLT1K LTR MaLR -22 566 291 290 326 20 10 chr1 77943534 77943632 -164720721 - MIR SINE MIR -115 147 49 332 323 31 8 chr1 77945516 77945643 -164718710 - L2 LINE L2 -4 3309 3180 570 238 47 17 chr1 77945749 77945921 -164718432 + MER5B DNA MER1_type 2 178 0 21 0 0 0 chr1 77946278 77946299 -164718054 + AT_rich Low_complexity Low_complexity 1 21 0 874 245 80 4 chr1 77946540 77946777 -164717576 + MIR SINE MIR 6 260 -2 312 266 248 31 chr1 77946969 77947195 -164717158 - L2 LINE L2 -1726 1588 1314 294 227 133 31 chr1 77947385 77947513 -164716840 + MIR SINE MIR 66 206 -56 589 249 24 12 chr1 77948176 77948345 -164716008 + L1MEc LINE L1 71 241 -6155 1883 263 66 44 chr1 77948423 77949591 -164714762 + L1MEc LINE L1 369 1562 -4834 1014 285 150 30 chr1 77949655 77950062 -164714291 - LTR16A LTR ERVL 0 457 2 216 0 0 0 chr1 77950085 77950109 -164714244 + (A)n Simple_repeat Simple_repeat 1 24 0 33 43 0 0 chr1 77950169 77950216 -164714137 + AT_rich Low_complexity Low_complexity 1 47 0 2387 77 7 0 chr1 77950411 77950711 -164713642 + AluSp SINE Alu 1 302 -11 465 300 81 31 chr1 77951454 77951677 -164712676 + MIR SINE MIR 22 255 -7 1865 161 20 3 chr1 77952095 77952400 -164711953 + AluJb SINE Alu 1 310 -2 364 340 64 74 chr1 77953017 77953263 -164711090 + L2 LINE L2 2978 3222 -50 3293 121 79 7 chr1 77953263 77953818 -164710535 + LTR49 LTR ERV1 1 595 0 364 340 64 74 chr1 77953818 77953868 -164710485 + L2 LINE L2 3222 3271 -1 2950 217 36 9 chr1 77954003 77954639 -164709714 - MER82 DNA MER2_type 0 653 1 321 240 83 0 chr1 77954662 77954758 -164709595 + L1ME4a LINE L1 6017 6120 -1 512 314 80 13 chr1 77954797 77955014 -164709339 + MIR SINE MIR 14 248 -14 1546 189 46 25 chr1 77955192 77955477 -164708876 - AluJo SINE Alu -21 291 1 429 267 97 36 chr1 77956914 77957079 -164707274 - L2 LINE L2 -5 3308 3134 2018 157 0 0 chr1 77957412 77957724 -164706629 + AluSx SINE Alu 1 312 0 1494 230 54 40 chr1 77957758 77958331 -164706022 + MLT1D LTR MaLR 3 626 0 470 269 39 0 chr1 77958332 77958436 -164705917 + L2 LINE L2 3204 3311 -2 414 301 8 8 chr1 77959003 77959126 -164705227 + MIR3 SINE MIR 82 204 -4 1376 254 15 12 chr1 77959219 77959693 -164704660 - MLT1H LTR MaLR 0 549 1 622 231 62 6 chr1 77959767 77959927 -164704426 - MIR SINE MIR 0 262 94 197 108 27 0 chr1 77960151 77960188 -164704165 + (CAA)n Simple_repeat Simple_repeat 2 39 0 248 329 0 0 chr1 77961167 77961237 -164703116 + MIR3 SINE MIR 108 177 -31 1331 232 7 21 chr1 77961570 77961854 -164702499 + AluJo SINE Alu 1 280 -32 439 151 21 11 chr1 77961855 77961948 -164702405 + GA-rich Low_complexity Low_complexity 2 95 0 314 416 15 0 chr1 77963769 77963906 -164700447 - L2 LINE L2 -18 3254 3116 422 329 109 21 chr1 77964314 77964597 -164699756 + L1MEc LINE L1 37 344 -6052 315 356 78 29 chr1 77966042 77966348 -164698005 - L2 LINE L2 -337 2977 2657 922 272 34 31 chr1 77966789 77967083 -164697270 + MLT1H LTR MaLR 15 309 -240 757 299 67 29 chr1 77967258 77967602 -164696751 + L2 LINE L2 2460 2816 -498 315 0 0 0 chr1 77969033 77969068 -164695285 + (CA)n Simple_repeat Simple_repeat 1 35 0 392 348 65 57 chr1 77969098 77969442 -164694911 + L2 LINE L2 2440 2847 -425 2517 78 0 0 chr1 77969442 77969749 -164694604 - AluY SINE Alu -4 307 1 392 348 65 57 chr1 77969749 77969966 -164694387 + L2 LINE L2 2847 3061 -211 510 303 124 4 chr1 77970527 77970761 -164693592 - LTR67 LTR ERVL -10 547 286 596 330 35 4 chr1 77972107 77972334 -164692019 + MIR SINE MIR 28 261 -1 197 217 0 14 chr1 77972855 77972924 -164691429 + C-rich Low_complexity Low_complexity 4 71 0 354 303 64 18 chr1 77973336 77973445 -164690908 + L2 LINE L2 3147 3260 -12 455 330 96 5 chr1 77973548 77973757 -164690596 + MIR SINE MIR 35 262 0 249 57 0 0 chr1 77973873 77973908 -164690445 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2153 62 43 4 chr1 77973910 77974186 -164690167 - AluY SINE Alu -24 287 1 323 253 233 14 chr1 77974215 77974361 -164689992 - MIR3 SINE MIR -19 189 12 419 289 115 41 chr1 77975250 77975468 -164688885 + MIR SINE MIR 28 261 -1 2175 94 0 11 chr1 77975949 77976235 -164688118 + AluSx SINE Alu 1 283 -29 234 0 0 0 chr1 77976235 77976261 -164688092 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 267 228 236 24 chr1 77976586 77976709 -164687644 + MIR SINE MIR 31 179 -83 193 250 98 87 chr1 77977431 77977523 -164686830 + MIR SINE MIR 20 112 -150 364 302 16 40 chr1 77977581 77977707 -164686646 - L2 LINE L2 0 3313 3191 204 97 0 0 chr1 77978086 77978117 -164686236 + (C)n Simple_repeat Simple_repeat 1 31 0 879 89 0 0 chr1 77978171 77978294 -164686059 - L1P5 LINE L1 -338 5813 5691 340 317 20 0 chr1 77978294 77978395 -164685958 - MIR SINE MIR -140 122 20 696 320 153 13 chr1 77978467 77979061 -164685292 + L2 LINE L2 2632 3313 0 215 380 74 8 chr1 77979199 77979320 -164685033 - L2 LINE L2 -226 3046 2918 2351 118 6 8 chr1 77979647 77980003 -164684350 - THE1A LTR MaLR 0 355 1 11294 93 30 0 chr1 77980005 77981537 -164682816 - THE1A-int LTR MaLR -2 1578 1 2303 127 8 8 chr1 77981537 77981892 -164682461 - THE1A LTR MaLR 0 355 1 2326 89 7 0 chr1 77982060 77982351 -164682002 - AluSc SINE Alu -16 293 1 207 268 18 0 chr1 77982363 77982419 -164681934 + L2 LINE L2 3159 3215 -98 833 337 45 52 chr1 77982628 77983205 -164681148 - L2 LINE L2 -5 3267 2688 203 61 30 0 chr1 77983443 77983476 -164680877 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 257 322 11 11 chr1 77984355 77984442 -164679911 + MIR SINE MIR 18 104 -158 232 319 0 0 chr1 77984479 77984548 -164679805 + MIR SINE MIR 46 114 -148 209 220 0 20 chr1 77984589 77984639 -164679714 + (CTA)n Simple_repeat Simple_repeat 1 49 0 2515 62 0 3 chr1 77984818 77985126 -164679227 - AluY SINE Alu -4 307 1 934 214 74 107 chr1 77985731 77986028 -164678325 - MLT1C LTR MaLR -6 461 181 3189 127 8 15 chr1 77986028 77986562 -164677791 - L1PA14 LINE L1 -3 6158 5629 934 214 74 107 chr1 77986562 77986694 -164677659 - MLT1C LTR MaLR -286 181 46 3012 142 9 19 chr1 77986959 77987531 -164676822 - HERVH LTR ERV1 -7147 566 1 2635 92 58 25 chr1 77987533 77987967 -164676386 - LTR7 LTR ERV1 -2 448 1 2915 137 8 12 chr1 77988346 77988859 -164675494 - MER41B LTR ERV1 0 635 125 188 320 81 60 chr1 77989823 77990107 -164674246 + L2 LINE L2 682 971 -2343 342 214 0 94 chr1 77990199 77990316 -164674037 - MIR SINE MIR 0 262 157 204 270 0 48 chr1 77990885 77990948 -164673405 + L2 LINE L2 3245 3304 -9 1829 218 68 37 chr1 77991255 77991800 -164672553 - MLT1E2 LTR MaLR -5 621 60 407 157 0 142 chr1 77991995 77992129 -164672224 - MLT1E2-int LTR MaLR -171 1200 1086 21 0 0 0 chr1 77992463 77992484 -164671869 + AT_rich Low_complexity Low_complexity 1 21 0 1711 156 0 70 chr1 77992699 77992874 -164671479 - AluJb SINE Alu -7 305 119 2255 119 0 10 chr1 77992874 77993176 -164671177 - AluSx SINE Alu -13 299 1 1711 156 0 70 chr1 77993176 77993215 -164671138 - AluJb SINE Alu -193 119 79 1751 158 58 17 chr1 77993215 77993575 -164670778 + THE1C LTR MaLR 1 375 0 1711 156 0 70 chr1 77993575 77993687 -164670666 - AluJb SINE Alu -233 79 1 23 0 0 0 chr1 77994429 77994452 -164669901 + AT_rich Low_complexity Low_complexity 1 23 0 309 246 168 113 chr1 77994458 77994661 -164669692 - MLT1E2-int LTR MaLR -279 1092 879 253 296 12 0 chr1 77994752 77994833 -164669520 - MLT1E2-int LTR MaLR -489 882 801 1661 215 75 25 chr1 77994838 77995276 -164669077 - MLT1C LTR MaLR -2 465 6 270 231 39 39 chr1 77995313 77995391 -164668962 - MLT1E2-int LTR MaLR -602 769 692 2460 254 7 2 chr1 77995595 77996198 -164668155 - MLT1E2-int LTR MaLR -765 606 1 2152 218 90 30 chr1 77996198 77996775 -164667578 - MLT1E2 LTR MaLR 0 626 15 221 284 75 0 chr1 77997295 77997362 -164666991 - L2 LINE L2 -1 3312 3241 418 277 123 0 chr1 77998974 77999104 -164665249 - L2 LINE L2 0 3272 3127 1997 129 28 78 chr1 78000268 78000732 -164663621 + HERVH LTR ERV1 251 691 -7022 * 16405 90 21 23 chr1 78000728 78003269 -164661084 + HERVH LTR ERV1 460 2995 -4718 938 133 7 0 chr1 78003248 78003398 -164660955 + HERVH LTR ERV1 3140 3290 -4423 * 3273 118 6 4 chr1 78003388 78003889 -164660464 + HERVH LTR ERV1 3492 3993 -3720 4101 136 9 11 chr1 78003891 78004554 -164659799 + HERVH LTR ERV1 4488 5149 -2564 430 289 51 15 chr1 78004866 78005074 -164659279 - MER20B DNA MER1_type 0 219 4 218 300 46 77 chr1 78005178 78005308 -164659045 - L2 LINE L2 -556 2758 2633 253 314 107 38 chr1 78005719 78005878 -164658475 + L2 LINE L2 2629 2798 -516 286 362 40 11 chr1 78005940 78006117 -164658236 + L2 LINE L2 2902 3083 -189 682 145 177 0 chr1 78006168 78006292 -164658061 + MER3 DNA MER1_type 1 146 -63 310 222 222 0 chr1 78006328 78006427 -164657926 + L2 LINE L2 3191 3311 -2 206 306 9 17 chr1 78006579 78006671 -164657682 + MIR SINE MIR 47 140 -68 274 268 0 0 chr1 78006899 78006970 -164657383 - MER116 DNA Mariner -9 71 1 236 128 0 26 chr1 78007755 78007794 -164656559 - MIR SINE MIR -5 257 220 907 217 46 0 chr1 78008057 78008232 -164656121 + MER5A DNA MER1_type 6 188 -1 615 313 46 92 chr1 78009668 78010159 -164654194 - L2 LINE L2 -460 2854 2342 2152 107 4 0 chr1 78010159 78010439 -164653914 + AluSp SINE Alu 1 281 -32 387 0 0 0 chr1 78010439 78010482 -164653871 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 615 313 46 92 chr1 78010482 78010641 -164653712 - L2 LINE L2 -970 2344 2233 742 193 30 0 chr1 78012026 78012161 -164652192 + FRAM SINE Alu 27 165 -11 225 0 0 0 chr1 78012183 78012208 -164652145 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2157 269 354 22 chr1 78012422 78014744 -164649609 + L2 LINE L2 210 3304 -9 325 247 19 14 chr1 78015091 78015206 -164649147 - MIR SINE MIR -63 145 28 486 279 22 0 chr1 78016684 78016820 -164647533 - L2 LINE L2 0 3313 3175 236 224 357 0 chr1 78019590 78019688 -164644665 - MIR SINE MIR -13 249 117 7283 233 29 39 chr1 78019747 78020557 -164643796 + L1M4 LINE L1 2422 3239 -2907 2237 114 0 10 chr1 78020557 78020865 -164643488 + AluSx SINE Alu 5 309 -3 7283 233 29 39 chr1 78020865 78021502 -164642851 + L1M4 LINE L1 3239 3881 -2265 189 0 0 0 chr1 78021502 78021523 -164642830 + (TATAA)n Simple_repeat Simple_repeat 2 22 0 7283 233 29 39 chr1 78021523 78022568 -164641785 + L1M4 LINE L1 3881 4890 -1256 295 298 21 11 chr1 78023123 78023181 -164641172 + MIR3 SINE MIR 93 154 -54 1794 161 46 22 chr1 78023181 78023547 -164640806 - THE1C LTR MaLR 0 375 1 295 298 21 11 chr1 78023547 78023582 -164640771 + MIR3 SINE MIR 154 187 -21 887 232 62 44 chr1 78023653 78023925 -164640428 - L2 LINE L2 -16 3297 3021 3163 279 87 27 chr1 78023955 78025220 -164639133 - L2 LINE L2 -420 2894 1554 1498 307 204 9 chr1 78025242 78026098 -164638255 - L2 LINE L2 -2243 1071 49 867 248 98 0 chr1 78026341 78026555 -164637798 - MIR SINE MIR -23 239 5 1953 129 9 31 chr1 78027069 78027387 -164636966 + AluSx SINE Alu 1 311 -1 196 222 130 0 chr1 78027696 78027750 -164636603 - MIR SINE MIR -3 259 199 310 309 133 12 chr1 78028073 78028238 -164636115 + MLT1J LTR MaLR 98 282 -229 719 299 97 30 chr1 78028337 78029070 -164635283 + L1MC/D LINE L1 3690 4471 -1675 736 213 50 79 chr1 78029071 78029311 -164635042 + L1MD2 LINE L1 6065 6297 -62 983 103 32 26 chr1 78029327 78029482 -164634871 - AluSx SINE Alu -27 283 128 312 200 0 0 chr1 78029482 78029547 -164634806 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 265 296 0 0 chr1 78029548 78029636 -164634717 + L1MC4 LINE L1 6614 6701 -1341 231 36 0 0 chr1 78029636 78029664 -164634689 + (TG)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr1 78029663 78029684 -164634669 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 1000 77 31 0 chr1 78029684 78029814 -164634539 - AluSx SINE Alu -178 134 1 283 78 38 0 chr1 78029814 78029881 -164634472 + L1MD1 LINE L1 6173 6359 0 392 308 72 15 chr1 78029933 78030264 -164634089 + L1MC/D LINE L1 4496 4845 -1301 893 277 72 23 chr1 78030534 78030949 -164633404 + L1MC/D LINE L1 5156 5589 -773 500 220 50 7 chr1 78030987 78031128 -164633225 + MER104 DNA Tc2 31 177 -3 984 247 18 4 chr1 78031131 78031358 -164632995 + L1MC/D LINE L1 5588 5817 -1991 203 161 0 0 chr1 78031406 78031437 -164632916 + polypurine Low_complexity Low_complexity 2 32 0 1080 206 23 9 chr1 78031774 78031988 -164632365 + MLT1D LTR MaLR 1 217 -288 3383 130 20 19 chr1 78032013 78032515 -164631838 + L1MA6 LINE L1 5175 5790 -510 285 98 0 0 chr1 78032515 78032556 -164631797 + (TA)n Simple_repeat Simple_repeat 1 41 0 3383 130 20 19 chr1 78032556 78032916 -164631437 + L1MA6 LINE L1 5790 6148 -152 876 268 63 51 chr1 78032916 78033265 -164631088 + MER20B DNA MER1_type 125 546 -237 2107 139 0 0 chr1 78033265 78033574 -164630779 - AluSq SINE Alu -4 309 1 876 268 63 51 chr1 78033574 78033809 -164630544 + MER20B DNA MER1_type 546 777 -6 910 183 26 21 chr1 78033827 78034018 -164630335 + MER3 DNA MER1_type 6 197 -12 247 245 0 19 chr1 78034318 78034371 -164629982 - MIR SINE MIR -181 81 30 413 275 217 10 chr1 78035183 78035390 -164628963 + MIR SINE MIR 9 258 -4 245 272 11 54 chr1 78035451 78035543 -164628810 + MIR SINE MIR 20 107 -155 197 320 0 0 chr1 78035831 78035881 -164628472 + L2 LINE L2 3254 3303 -10 204 326 23 12 chr1 78036094 78036180 -164628173 - MIR SINE MIR -110 152 66 2381 80 3 3 chr1 78036217 78036519 -164627834 - AluSp SINE Alu -11 302 1 405 0 0 0 chr1 78037145 78037190 -164627163 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 231 19 0 chr1 78037607 78037659 -164626694 - L2 LINE L2 -5 3308 3256 620 190 25 0 chr1 78037660 78037781 -164626572 + MER3 DNA MER1_type 10 133 -76 1637 158 11 21 chr1 78037781 78038105 -164626248 - AluJo SINE Alu 0 321 1 725 287 126 0 chr1 78038674 78038904 -164625449 - MIR SINE MIR -2 260 2 204 100 40 20 chr1 78038969 78039019 -164625334 + CT-rich Low_complexity Low_complexity 4 54 0 249 224 0 0 chr1 78039035 78039093 -164625260 + (CTA)n Simple_repeat Simple_repeat 2 59 0 966 285 30 0 chr1 78039093 78039328 -164625025 + MIR SINE MIR 3 244 -18 272 174 0 0 chr1 78040412 78040458 -164623895 + L2 LINE L2 3268 3313 0 383 336 118 17 chr1 78040660 78040898 -164623455 - MIR SINE MIR 0 262 1 22 35 0 0 chr1 78041597 78041626 -164622727 + AT_rich Low_complexity Low_complexity 1 29 0 1618 289 87 22 chr1 78042017 78042619 -164621734 - L1M4 LINE L1 -1951 4195 3499 1612 155 123 3 chr1 78042619 78042929 -164621424 + MER7A DNA MER2_type 2 346 0 1618 289 87 22 chr1 78042929 78043335 -164621018 - L1M4 LINE L1 -2647 3499 3121 1261 212 104 21 chr1 78043334 78043669 -164620684 - L1ME LINE L1 -459 5703 5341 * 378 300 73 0 chr1 78043668 78043818 -164620535 + L1MC/D LINE L1 5586 5746 -2062 * 1978 91 94 0 chr1 78094481 78094746 -164569607 - AluSx SINE Alu -22 290 1 2199 185 109 22 chr1 78094908 78095555 -164568798 - Tigger7 DNA MER2_type -2 2585 5 810 265 13 58 chr1 78095995 78096308 -164568045 - LTR2 LTR ERV1 -150 299 1 338 203 0 25 chr1 78096380 78096459 -164567894 - MER46C DNA MER2_type -146 192 116 25 0 0 0 chr1 78097485 78097510 -164566843 + AT_rich Low_complexity Low_complexity 1 25 0 2119 194 0 44 chr1 78097826 78098234 -164566119 - MLT1B LTR MaLR 0 390 1 436 252 134 53 chr1 78098249 78098627 -164565726 - L1MC/D LINE L1 -747 5399 5283 1663 188 3 23 chr1 78098627 78098936 -164565417 - AluJo SINE Alu -9 303 1 436 252 134 53 chr1 78098936 78099037 -164565316 - L1MC/D LINE L1 -863 5283 5192 29 47 0 0 chr1 78099301 78099344 -164565009 + AT_rich Low_complexity Low_complexity 1 43 0 2239 66 23 30 chr1 78099759 78100060 -164564293 + L1PA7 LINE L1 5855 6153 -1 734 36 54 0 chr1 78100151 78100263 -164564090 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 2301 112 0 3 chr1 78100446 78100751 -164563602 - AluSx SINE Alu -8 304 1 691 247 76 14 chr1 78100940 78101215 -164563138 + L1ME3 LINE L1 4104 4395 -1751 928 197 0 63 chr1 78101344 78101567 -164562786 + AluJo SINE Alu 92 300 -12 1581 225 72 43 chr1 78101664 78102355 -164561998 + L1ME3 LINE L1 5166 5904 -260 334 192 0 125 chr1 78102565 78102669 -164561684 + MLT1H LTR MaLR 459 549 0 * 406 267 0 0 chr1 78102669 78102754 -164561599 + MER46C DNA MER2_type 186 270 -68 5637 153 20 26 chr1 78102778 78104509 -164559844 - L1MA4 LINE L1 -6 6294 4555 2311 74 0 3 chr1 78104509 78104823 -164559530 - AluSx SINE Alu 0 315 3 311 98 0 0 chr1 78104827 78104868 -164559485 + MSTA LTR MaLR 388 428 0 358 188 0 0 chr1 78104889 78104958 -164559395 + L1ME3 LINE L1 6080 6148 -14 193 57 57 0 chr1 78105829 78105864 -164558489 + (TA)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr1 78106142 78106178 -164558175 + AT_rich Low_complexity Low_complexity 1 36 0 422 313 35 0 chr1 78106202 78106346 -164558007 - MIR SINE MIR -111 151 3 292 258 211 8 chr1 78106356 78106484 -164557869 + L2 LINE L2 3160 3313 0 369 281 8 25 chr1 78106713 78106834 -164557519 + MIR SINE MIR 144 262 0 724 287 5 27 chr1 78106847 78107070 -164557283 + MIR SINE MIR 1 218 -44 182 225 113 62 chr1 78107035 78107115 -164557238 - MIR SINE MIR -44 218 135 * 284 317 197 46 chr1 78107943 78108418 -164555935 - L2 LINE L2 -972 2342 1765 2280 78 3 3 chr1 78108418 78108734 -164555619 - AluSq SINE Alu 0 316 1 284 317 197 46 chr1 78108734 78108825 -164555528 - L2 LINE L2 -1549 1765 1689 787 201 20 55 chr1 78109028 78109227 -164555126 - MIR SINE MIR -69 193 2 596 278 44 30 chr1 78109952 78109991 -164554362 - MIR SINE MIR -15 247 210 2147 118 7 0 chr1 78109991 78110002 -164554351 - AluSx SINE Alu -14 298 289 586 25 12 12 chr1 78110002 78110083 -164554270 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2147 118 7 0 chr1 78110083 78110367 -164553986 - AluSx SINE Alu -23 289 1 596 278 44 30 chr1 78110367 78110565 -164553788 - MIR SINE MIR -52 210 7 188 235 0 0 chr1 78110576 78110610 -164553743 + L2 LINE L2 3261 3294 -19 302 75 0 0 chr1 78110705 78110745 -164553608 + L1PA8 LINE L1 6125 6164 -8 693 215 241 5 chr1 78110855 78111050 -164553303 - MIR SINE MIR -16 246 6 2200 121 0 10 chr1 78112504 78112810 -164551543 + AluSx SINE Alu 1 303 -9 1638 185 0 47 chr1 78112930 78113249 -164551104 - AluJo SINE Alu -8 304 1 258 195 9 168 chr1 78113368 78113481 -164550872 - MER94 DNA DNA -10 124 30 445 274 45 39 chr1 78114183 78114362 -164549991 + MLT1J LTR MaLR 11 190 -321 580 256 160 6 chr1 78114501 78114657 -164549696 + MER5A DNA MER1_type 9 188 -1 410 288 26 41 chr1 78114657 78114820 -164549533 + MLT1J LTR MaLR 256 476 -35 440 264 6 138 chr1 78115376 78115470 -164548883 - L2 LINE L2 -11 3261 3197 2005 123 6 31 chr1 78115470 78115788 -164548565 + AluSx SINE Alu 1 310 -2 440 264 6 138 chr1 78115788 78115860 -164548493 - L2 LINE L2 -75 3197 3117 3149 146 27 27 chr1 78116153 78116715 -164547638 + Tigger3b DNA MER2_type 1 562 -669 2391 63 0 0 chr1 78116818 78117103 -164547250 - AluY SINE Alu -24 287 3 2214 130 6 3 chr1 78117464 78117795 -164546558 - MER47A DNA MER2_type -34 332 1 2230 103 3 3 chr1 78117976 78118278 -164546075 + AluSq SINE Alu 1 302 -11 2293 107 0 0 chr1 78118281 78118580 -164545773 + AluSx SINE Alu 4 302 -10 1083 86 0 7 chr1 78118588 78118727 -164545626 + AluY SINE Alu 5 142 -169 2932 149 30 16 chr1 78118994 78119492 -164544861 + Tigger3b DNA MER2_type 728 1232 0 510 248 208 12 chr1 78120030 78120280 -164544073 - MLT1G1 LTR MaLR -8 587 289 283 354 0 0 chr1 78120582 78120664 -164543689 - MIR SINE MIR -87 121 40 2242 106 0 3 chr1 78120787 78121080 -164543273 - AluSg SINE Alu -17 293 2 4799 133 15 34 chr1 78121082 78121933 -164542420 - L1MA8 LINE L1 -176 6115 5281 485 289 40 7 chr1 78122034 78122183 -164542170 - L2 LINE L2 -5 3308 3155 2230 70 0 7 chr1 78122278 78122597 -164541756 - AluY SINE Alu 0 317 1 352 325 25 13 chr1 78122771 78122928 -164541425 - Tigger8 DNA MER2_type -133 533 375 356 248 121 81 chr1 78122986 78123184 -164541169 - Tigger8 DNA MER2_type -413 253 48 2347 110 0 0 chr1 78123213 78123521 -164540832 + AluSg SINE Alu 1 308 -2 198 257 239 35 chr1 78124106 78124219 -164540134 + MIR SINE MIR 33 168 -94 840 176 59 80 chr1 78124816 78125054 -164539299 + MER106A DNA MER1_type 1 233 -3 459 316 30 6 chr1 78125169 78125337 -164539016 + MIR SINE MIR 11 182 -80 1967 137 16 19 chr1 78125483 78125796 -164538557 + AluSx SINE Alu 1 312 0 680 187 44 88 chr1 78125840 78126022 -164538331 + AluJo SINE Alu 124 297 -15 288 0 0 0 chr1 78126161 78126193 -164538160 + (CA)n Simple_repeat Simple_repeat 2 33 0 752 235 0 0 chr1 78126612 78126744 -164537609 + FLAM_A SINE Alu 1 132 -1 288 0 0 0 chr1 78127072 78127104 -164537249 + (CA)n Simple_repeat Simple_repeat 2 33 0 2336 104 3 0 chr1 78127182 78127490 -164536863 - AluSp SINE Alu -3 310 2 337 284 55 24 chr1 78127554 78127681 -164536672 + L2 LINE L2 3182 3312 -1 6718 80 30 10 chr1 78127808 78128482 -164535871 - L1PA13 LINE L1 0 6163 5473 2218 95 3 13 chr1 78128482 78128786 -164535567 - AluSg SINE Alu -7 303 3 6718 80 30 10 chr1 78128786 78129067 -164535286 - L1PA13 LINE L1 -690 5473 5199 1751 171 148 6 chr1 78129067 78129406 -164534947 - MSTB1 LTR MaLR -45 387 1 2566 54 0 0 chr1 78129868 78130166 -164534187 + AluY SINE Alu 3 300 -11 642 270 32 5 chr1 78130166 78130355 -164533998 + MIR SINE MIR 59 252 -10 2546 41 0 0 chr1 78130789 78131080 -164533273 - AluY SINE Alu -18 293 3 216 0 0 0 chr1 78131613 78131637 -164532716 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 356 260 208 23 chr1 78131665 78131838 -164532515 - MIR SINE MIR -1 261 57 354 80 0 0 chr1 78132127 78132177 -164532176 + (TG)n Simple_repeat Simple_repeat 1 50 0 184 336 56 28 chr1 78132481 78132588 -164531765 - L2 LINE L2 -24 3248 3139 273 151 0 0 chr1 78132716 78132769 -164531584 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 2248 78 42 0 chr1 78132815 78133098 -164531255 - AluSp SINE Alu -17 296 2 243 196 71 0 chr1 78133547 78133603 -164530750 - MIR SINE MIR -81 181 122 200 235 25 0 chr1 78134028 78134078 -164530275 - MIR SINE MIR -63 145 93 2120 117 3 0 chr1 78134225 78134535 -164529818 + AluSx SINE Alu 1 311 0 332 204 145 63 chr1 78134544 78134780 -164529573 - LTR48 LTR ERV1 -15 750 438 367 83 233 0 chr1 78134791 78134851 -164529502 + MER39 LTR ERV1 6 79 -628 2126 176 18 3 chr1 78135090 78135430 -164528923 - MER7A DNA MER2_type 0 346 4 493 328 26 46 chr1 78136026 78136221 -164528132 - L2 LINE L2 0 3272 3082 363 141 0 0 chr1 78136849 78136913 -164527440 + (GGGA)n Simple_repeat Simple_repeat 3 66 0 180 77 0 0 chr1 78137922 78137948 -164526405 + (GGGTG)n Simple_repeat Simple_repeat 4 29 0 312 91 0 0 chr1 78138872 78138916 -164525437 + (CA)n Simple_repeat Simple_repeat 2 45 0 239 260 208 0 chr1 78140314 78140410 -164523943 + MIR3 SINE MIR 86 201 -7 210 37 0 0 chr1 78140576 78140603 -164523750 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr1 78140876 78140898 -164523455 + AT_rich Low_complexity Low_complexity 1 22 0 1901 79 56 79 chr1 78142056 78142361 -164521992 - AluSx SINE Alu -14 298 1 484 295 138 14 chr1 78143018 78143228 -164521125 - MIR SINE MIR -10 252 17 24 77 0 0 chr1 78144212 78144264 -164520089 + AT_rich Low_complexity Low_complexity 1 52 0 393 290 55 27 chr1 78144375 78144596 -164519757 - MIR SINE MIR -50 212 7 252 0 0 0 chr1 78146548 78146576 -164517777 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 237 331 140 0 chr1 78146753 78146889 -164517464 - MIR3 SINE MIR -30 178 24 225 281 88 9 chr1 78148935 78149045 -164515308 + MIR SINE MIR 66 192 -70 25 0 0 0 chr1 78149655 78149680 -164514673 + AT_rich Low_complexity Low_complexity 1 25 0 22 80 0 0 chr1 78149699 78149749 -164514604 + AT_rich Low_complexity Low_complexity 1 50 0 195 339 93 0 chr1 78149749 78149867 -164514486 + L2 LINE L2 3185 3313 0 182 271 0 71 chr1 78153100 78153185 -164511168 - MIR SINE MIR -65 197 119 541 277 43 8 chr1 78153700 78153953 -164510400 - L1ME4a LINE L1 -271 5850 5589 304 256 37 0 chr1 78154066 78154148 -164510205 - L1P2 LINE L1 -705 5449 5365 459 300 80 45 chr1 78154278 78154792 -164509561 + MLT1K LTR MaLR 16 588 0 1942 120 62 4 chr1 78154832 78155108 -164509245 + AluSx SINE Alu 3 294 -18 252 0 0 0 chr1 78155268 78155296 -164509057 + (TG)n Simple_repeat Simple_repeat 2 29 0 2469 91 0 0 chr1 78156002 78156310 -164508043 - AluSq SINE Alu -5 308 1 241 290 0 0 chr1 78156851 78156920 -164507433 - MIR SINE MIR 0 262 194 286 244 135 45 chr1 78157861 78158017 -164506336 + MIR SINE MIR 57 226 -36 455 305 82 73 chr1 78158834 78159188 -164505165 - L3 LINE CR1 -25 1552 1196 646 293 59 24 chr1 78159525 78159682 -164504671 + MIR SINE MIR 1 172 -90 2316 90 0 7 chr1 78159682 78159982 -164504371 - AluSp SINE Alu -15 298 1 646 293 59 24 chr1 78159982 78160077 -164504276 + MIR SINE MIR 172 262 0 887 190 22 91 chr1 78160250 78160482 -164503871 + MER20 DNA MER1_type 1 216 -3 602 253 70 26 chr1 78161605 78161834 -164502519 - MIR SINE MIR -6 256 18 259 308 178 14 chr1 78162665 78162811 -164501542 - MIR3 SINE MIR -6 202 33 358 309 144 43 chr1 78162913 78163282 -164501071 - L3 LINE CR1 -3 1574 1169 255 293 81 41 chr1 78163305 78163428 -164500925 + L2 LINE L2 2398 2525 -789 2247 39 43 0 chr1 78164872 78165151 -164499202 + AluY SINE Alu 1 291 -20 233 398 11 28 chr1 78165585 78165766 -164498587 - L3 LINE CR1 -103 1474 1297 181 292 97 14 chr1 78166154 78166226 -164498127 + MIR SINE MIR 1 78 -184 21 89 0 0 chr1 78166351 78166407 -164497946 + AT_rich Low_complexity Low_complexity 1 56 0 31 26 0 0 chr1 78169086 78169124 -164495229 + AT_rich Low_complexity Low_complexity 1 38 0 205 333 129 14 chr1 78170122 78170269 -164494084 + L2 LINE L2 3106 3269 -3 234 265 162 34 chr1 78170757 78170874 -164493479 + L2 LINE L2 3168 3299 -14 45 0 0 0 chr1 78173284 78173329 -164491024 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr1 78173399 78173424 -164490929 + AT_rich Low_complexity Low_complexity 1 25 0 704 270 33 88 chr1 78173988 78174262 -164490091 - MIR SINE MIR -1 261 3 311 276 54 49 chr1 78174363 78174548 -164489805 + L1ME4a LINE L1 5932 6117 -4 306 301 85 80 chr1 78174717 78174893 -164489460 - MIR3 SINE MIR -14 194 18 596 216 184 14 chr1 78175607 78175825 -164488528 - MIR SINE MIR 0 262 8 297 51 0 0 chr1 78176012 78176051 -164488302 + (T)n Simple_repeat Simple_repeat 1 39 0 2308 99 0 34 chr1 78176310 78176634 -164487719 - AluSq SINE Alu 0 313 1 892 126 6 126 chr1 78176647 78176830 -164487523 - FRAM SINE Alu 0 40 1 1050 214 160 8 chr1 78176848 78177110 -164487243 - AluJb SINE Alu 0 302 1 201 237 0 0 chr1 78177725 78177763 -164486590 + (CTCA)n Simple_repeat Simple_repeat 3 40 0 1345 197 115 75 chr1 78178316 78178365 -164485988 - MLT1F LTR MaLR -16 526 480 2402 84 0 0 chr1 78178365 78178664 -164485689 - AluSp SINE Alu -14 299 1 1345 197 115 75 chr1 78178664 78179117 -164485236 - MLT1F LTR MaLR -62 480 4 618 259 54 54 chr1 78179206 78179412 -164484941 + MIR SINE MIR 18 226 -36 2058 91 91 0 chr1 78179412 78179688 -164484665 - AluSx SINE Alu -11 301 1 618 259 54 54 chr1 78179688 78179705 -164484648 + MIR SINE MIR 225 241 -21 2199 185 109 22 chr1 78179850 78180497 -164483856 - Tigger7 DNA MER2_type -2 2585 5 2109 64 85 7 chr1 78182228 78182510 -164481843 - AluY SINE Alu -7 304 1 21 0 0 0 chr1 78182625 78182646 -164481707 + AT_rich Low_complexity Low_complexity 1 21 0 1852 182 28 19 chr1 78183330 78183692 -164480661 + MER21B LTR ERV1 39 403 -460 1970 173 9 0 chr1 78183699 78184034 -164480319 - MER1B DNA MER1_type -1 338 1 1604 166 96 14 chr1 78184042 78184386 -164479967 + MER21B LTR ERV1 412 783 -80 189 74 0 0 chr1 78184477 78184504 -164479849 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2129 102 39 0 chr1 78186243 78186526 -164477827 + AluSx SINE Alu 1 294 -18 1920 121 100 27 chr1 78188616 78188987 -164475366 - LTR14B LTR ERVK 0 608 211 269 47 0 47 chr1 78188975 78189018 -164475335 - LTR14B LTR ERVK -562 46 6 * 277 356 10 0 chr1 78189168 78189269 -164475084 + L3 LINE CR1 1372 1473 -104 181 235 59 15 chr1 78189941 78190009 -164474344 - MIR SINE MIR -127 135 65 294 274 60 0 chr1 78190064 78190148 -164474205 + L3 LINE CR1 1479 1567 -10 2198 114 3 25 chr1 78190699 78191016 -164473337 - AluSg SINE Alu 0 310 1 241 257 186 0 chr1 78191031 78191101 -164473252 + L2 LINE L2 3208 3290 -23 629 211 34 118 chr1 78191391 78191628 -164472725 + MIR SINE MIR 30 246 -16 1609 136 114 0 chr1 78191641 78191905 -164472448 + AluJb SINE Alu 1 294 -18 288 381 81 12 chr1 78193859 78194017 -164470336 - MIR3 SINE MIR -11 197 29 191 264 190 25 chr1 78194017 78194138 -164470215 + MIR3 SINE MIR 2 142 -66 216 0 0 0 chr1 78196002 78196026 -164468327 + (GA)n Simple_repeat Simple_repeat 2 25 0 227 333 120 21 chr1 78196555 78196747 -164467606 + L2 LINE L2 2829 3039 -233 184 378 89 0 chr1 78196869 78196959 -164467394 + L2 LINE L2 3113 3210 -62 239 255 11 11 chr1 78196997 78197091 -164467262 + (TA)n Simple_repeat Simple_repeat 1 94 0 7099 45 20 5 chr1 78197113 78198259 -164466094 - L1PA7 LINE L1 0 6154 5003 226 368 132 9 chr1 78198505 78198619 -164465734 - L2 LINE L2 -2 3270 3143 2544 73 0 6 chr1 78198971 78199286 -164465067 + AluSp SINE Alu 1 313 0 643 251 100 26 chr1 78199291 78199522 -164464831 - MIR SINE MIR 0 262 15 218 245 0 0 chr1 78202962 78203011 -164461342 + MIR SINE MIR 64 112 -150 242 304 63 32 chr1 78203204 78203362 -164460991 + MIR SINE MIR 86 248 -14 1897 298 31 48 chr1 78203512 78204217 -164460136 - MER115 DNA AcHobo 0 693 1 2304 102 3 0 chr1 78204893 78205186 -164459167 + AluSp SINE Alu 1 294 -19 245 253 74 53 chr1 78205575 78205670 -164458683 - MIR SINE MIR -10 252 156 238 207 17 0 chr1 78205830 78205888 -164458465 + G-rich Low_complexity Low_complexity 3 61 0 304 311 98 12 chr1 78209674 78209976 -164454377 + L3 LINE CR1 1098 1468 -109 330 270 54 9 chr1 78210614 78210725 -164453628 + MIR SINE MIR 74 189 -73 1474 105 50 0 chr1 78210725 78210944 -164453409 - MER30 DNA MER1_type 0 230 1 263 276 26 43 chr1 78210969 78211085 -164453268 + MER94 DNA DNA 2 115 -19 580 282 23 0 chr1 78211160 78211334 -164453019 + MER5A DNA MER1_type 12 189 0 354 278 127 0 chr1 78212186 78212312 -164452041 - MIR3 SINE MIR -28 180 39 244 284 84 0 chr1 78214395 78214490 -164449863 + MIR SINE MIR 103 205 -57 402 200 141 59 chr1 78214803 78214973 -164449380 - L1ME4a LINE L1 -74 6047 5864 1719 174 21 3 chr1 78216154 78216442 -164447911 - AluJb SINE Alu -19 293 1 2359 268 149 28 chr1 78216538 78218009 -164446344 + L2 LINE L2 1566 3309 -4 223 303 35 62 chr1 78218007 78218152 -164446201 + L2 LINE L2 2716 2856 -458 * 258 324 58 14 chr1 78218353 78218492 -164445861 + L2 LINE L2 3156 3300 -13 625 258 26 21 chr1 78219352 78219542 -164444811 + MIR SINE MIR 1 191 -71 307 345 68 20 chr1 78220561 78220709 -164443644 + L2 LINE L2 3111 3265 -7 1220 131 0 6 chr1 78222372 78222548 -164441805 + AluSp SINE Alu 120 294 -19 253 327 39 10 chr1 78222928 78223032 -164441321 - MER5B DNA MER1_type -49 129 23 348 202 229 0 chr1 78223072 78223181 -164441172 - MER5A DNA MER1_type -1 188 55 189 284 30 0 chr1 78225405 78225472 -164438881 - MIR SINE MIR -38 224 156 331 333 29 14 chr1 78225540 78225678 -164438675 + MIR SINE MIR 68 207 -55 2175 121 10 3 chr1 78225679 78225993 -164438360 - MER7A DNA MER2_type -23 323 10 205 288 150 12 chr1 78226079 78226159 -164438194 - MIR3 SINE MIR -108 100 10 934 204 307 3 chr1 78226235 78226623 -164437730 - Charlie4a DNA MER1_type 0 508 3 557 280 108 9 chr1 78229164 78229396 -164434957 + MIR SINE MIR 4 258 -4 228 159 23 0 chr1 78229673 78229717 -164434636 - L2 LINE L2 -5 3308 3264 190 146 73 0 chr1 78231254 78231295 -164433058 - MER5B DNA MER1_type -134 44 1 325 186 115 71 chr1 78232199 78232312 -164432041 - MIR3 SINE MIR -2 206 89 311 318 33 20 chr1 78232801 78232952 -164431401 + MER103 DNA DNA 8 160 -6 183 263 18 0 chr1 78233885 78233942 -164430411 + MIR SINE MIR 81 138 -124 1782 156 0 31 chr1 78233988 78234300 -164430053 + AluJo SINE Alu 3 305 0 260 293 45 53 chr1 78234757 78234890 -164429463 + MER20 DNA MER1_type 64 195 -24 204 40 0 0 chr1 78236343 78236368 -164427985 + (CTG)n Simple_repeat Simple_repeat 3 27 0 2042 143 50 37 chr1 78237371 78237749 -164426604 - MLT1B LTR MaLR -7 383 1 181 262 24 0 chr1 78238139 78238181 -164426172 - MIR SINE MIR -18 244 202 1893 123 58 3 chr1 78238203 78238316 -164426037 + AluY SINE Alu 1 106 -205 297 0 0 0 chr1 78238316 78238349 -164426004 + (CA)n Simple_repeat Simple_repeat 2 34 0 1893 123 58 3 chr1 78238349 78238528 -164425825 + AluY SINE Alu 106 309 -2 735 152 45 0 chr1 78238546 78238678 -164425675 - FLAM_C SINE Alu 0 143 6 211 320 27 13 chr1 78238939 78239014 -164425339 + MIR SINE MIR 20 95 -167 1917 130 33 7 chr1 78240073 78240373 -164423980 - AluSx SINE Alu -4 308 1 739 271 51 0 chr1 78240485 78240699 -164423654 + MIR SINE MIR 17 241 -21 1491 197 16 26 chr1 78242196 78242501 -164421852 - AluJo SINE Alu -10 302 1 516 286 42 0 chr1 78242644 78242812 -164421541 + MIR SINE MIR 88 262 0 204 269 127 30 chr1 78245193 78245327 -164419026 - L2 LINE L2 -704 2610 2464 274 299 76 6 chr1 78248077 78248234 -164416119 - L3 LINE CR1 -348 1229 1062 185 200 91 0 chr1 78248395 78248450 -164415903 - L3 LINE CR1 -712 865 806 252 0 0 0 chr1 78248684 78248712 -164415641 + (CA)n Simple_repeat Simple_repeat 1 28 0 318 231 44 44 chr1 78248817 78248908 -164415445 - MIR SINE MIR -82 126 36 212 235 244 25 chr1 78249137 78249256 -164415097 + MIR3 SINE MIR 50 194 -14 524 224 24 16 chr1 78249631 78249756 -164414597 - LTR16C LTR ERVL -2 489 364 534 288 86 25 chr1 78250009 78250450 -164413903 - L1ME4a LINE L1 -38 6066 5599 253 293 30 68 chr1 78250455 78250504 -164413849 - L2 LINE L2 -2 3311 3262 2340 94 3 10 chr1 78250504 78250813 -164413540 - AluSg SINE Alu -3 307 1 253 293 30 68 chr1 78250813 78250896 -164413457 - L2 LINE L2 -51 3262 3184 271 309 24 0 chr1 78252002 78252086 -164412267 + MIR SINE MIR 41 126 -82 231 255 0 0 chr1 78252292 78252339 -164412014 + GA-rich Low_complexity Low_complexity 2 48 0 443 185 93 28 chr1 78252625 78252733 -164411620 - L2 LINE L2 0 3313 3199 628 236 174 20 chr1 78252744 78252939 -164411414 - MIR SINE MIR -3 259 35 422 243 19 9 chr1 78253792 78253899 -164410454 - MIR SINE MIR -80 182 75 351 152 293 10 chr1 78254837 78254936 -164409417 + MIR SINE MIR 111 237 -25 407 237 0 0 chr1 78255654 78255751 -164408602 - MER5A DNA MER1_type -80 109 13 425 289 16 0 chr1 78255891 78256012 -164408341 + L2 LINE L2 3191 3313 0 611 313 50 6 chr1 78257118 78257300 -164407053 + MER91A DNA MER1_type 5 194 -2 459 171 48 19 chr1 78258195 78258300 -164406053 - MLT1A2 LTR MaLR 0 374 267 308 294 31 17 chr1 78258368 78258600 -164405753 - L1ME4a LINE L1 -1006 5123 4886 327 191 0 0 chr1 78258643 78258711 -164405642 + (TA)n Simple_repeat Simple_repeat 2 69 0 273 29 0 0 chr1 78258712 78258746 -164405607 + (GA)n Simple_repeat Simple_repeat 1 34 0 338 264 34 22 chr1 78258746 78258924 -164405429 - L1ME4a LINE L1 -1318 4811 4632 300 272 35 0 chr1 78258963 78259077 -164405276 - L1ME4a LINE L1 -2629 3500 3383 44 46 0 0 chr1 78259140 78259205 -164405148 + AT_rich Low_complexity Low_complexity 1 65 0 270 56 0 0 chr1 78259362 78259398 -164404955 + (T)n Simple_repeat Simple_repeat 1 36 0 716 313 8 4 chr1 78259409 78259665 -164404688 - HAL1 LINE L1 -2247 260 4 404 258 126 68 chr1 78259678 78260132 -164404221 - L1ME4a LINE L1 -5035 1084 605 398 176 12 0 chr1 78260655 78260740 -164403613 - MER3 DNA MER1_type -1 208 123 349 337 6 62 chr1 78260946 78261124 -164403229 - MIR SINE MIR -39 223 56 541 286 49 44 chr1 78261545 78261748 -164402605 + MIR SINE MIR 47 250 -12 691 282 27 18 chr1 78261785 78262005 -164402348 - MIR SINE MIR -38 224 3 504 249 210 24 chr1 78262054 78262387 -164401966 + L1ME4a LINE L1 5686 6080 -41 342 0 0 0 chr1 78262639 78262677 -164401676 + (CA)n Simple_repeat Simple_repeat 1 38 0 1619 174 0 36 chr1 78264460 78264765 -164399588 - AluJb SINE Alu -18 294 1 455 311 40 28 chr1 78264907 78265084 -164399269 + L3 LINE CR1 900 1078 -499 503 292 8 0 chr1 78265484 78265604 -164398749 + L3 LINE CR1 1356 1476 -101 189 0 0 0 chr1 78268065 78268086 -164396267 + (TAA)n Simple_repeat Simple_repeat 3 23 0 443 200 78 0 chr1 78268092 78268207 -164396146 - MIR SINE MIR -4 258 135 1268 193 19 38 chr1 78268207 78268523 -164395830 - MER49 LTR ERV1 0 923 614 1154 133 0 5 chr1 78268521 78268709 -164395644 - MER49 LTR ERV1 -560 363 177 * 186 279 0 29 chr1 78268709 78268777 -164395576 - MIR SINE MIR -127 135 70 242 331 44 44 chr1 78269118 78269299 -164395054 + MIR3 SINE MIR 23 203 -5 632 303 61 35 chr1 78269371 78269599 -164394754 - MIR SINE MIR -10 252 19 1142 204 145 20 chr1 78269611 78269915 -164394438 - MER2 DNA MER2_type -1 343 2 29 0 0 0 chr1 78270174 78270203 -164394150 + AT_rich Low_complexity Low_complexity 1 29 0 1694 201 82 42 chr1 78270342 78270839 -164393514 + MER20B DNA MER1_type 6 522 -261 724 223 95 18 chr1 78270928 78271202 -164393151 + MER20B DNA MER1_type 488 782 -1 948 256 94 59 chr1 78271503 78271893 -164392460 + L1ME3A LINE L1 2958 3333 -2829 1665 169 37 18 chr1 78271893 78272208 -164392145 + AluJb SINE Alu 5 324 0 948 256 94 59 chr1 78272208 78274515 -164389838 + L1ME3A LINE L1 3333 5940 -222 2324 113 7 0 chr1 78274515 78274825 -164389528 + AluSx SINE Alu 1 312 0 948 256 94 59 chr1 78274825 78274968 -164389385 + L1ME3A LINE L1 5940 6077 -85 35451 78 15 14 chr1 78275699 78281813 -164382540 + L1PA6 LINE L1 38 6154 0 404 241 25 28 chr1 78282270 78282430 -164381923 - MIR SINE MIR -18 244 39 431 264 90 36 chr1 78283179 78283346 -164381007 + MIR SINE MIR 66 241 -21 240 215 0 46 chr1 78283348 78283413 -164380940 - MLT1I LTR MaLR 0 409 348 642 209 8 0 chr1 78283418 78283552 -164380801 - MLT1J2 LTR MaLR -315 135 1 689 202 18 30 chr1 78284995 78285163 -164379190 - MLT1J1 LTR MaLR -279 167 2 2072 172 12 21 chr1 78286035 78286125 -164378228 + L1MC3 LINE L1 7177 7266 -519 2114 153 88 13 chr1 78286125 78286523 -164377830 + MSTA LTR MaLR 1 428 0 2072 172 12 21 chr1 78286523 78286856 -164377497 + L1MC3 LINE L1 7266 7596 -189 215 271 52 42 chr1 78287597 78287693 -164376660 + MIR SINE MIR 20 116 -92 389 231 88 8 chr1 78287710 78287842 -164376511 + MIR SINE MIR 33 184 -24 332 231 0 0 chr1 78288142 78288207 -164376146 + L1MC3 LINE L1 7203 7267 -518 608 131 0 9 chr1 78288207 78288314 -164376039 + MSTA LTR MaLR 1 106 -322 1271 251 41 37 chr1 78288430 78288893 -164375460 + L1MCb LINE L1 464 928 -5117 23 78 0 0 chr1 78288909 78288960 -164375393 + AT_rich Low_complexity Low_complexity 1 51 0 779 189 66 25 chr1 78288975 78289218 -164375135 + L1MCb LINE L1 942 1194 -4851 793 180 30 0 chr1 78289230 78289423 -164374930 + MER6 DNA MER2_type -62 865 0 1328 233 60 45 chr1 78289423 78290248 -164374105 + L1MCb LINE L1 1201 2027 -4537 411 335 22 31 chr1 78290256 78290614 -164373739 + L1PA15 LINE L1 1 355 -7226 4494 161 48 9 chr1 78291098 78291958 -164372395 + L1PA15 LINE L1 723 1615 -5970 * 9814 183 27 20 chr1 78291954 78295348 -164369005 + L1PA15 LINE L1 4162 7576 -27 212 200 0 50 chr1 78295370 78295391 -164368962 + A-rich Low_complexity Low_complexity 1 22 -35 5843 98 25 5 chr1 78295391 78296509 -164367844 + L1PA14 LINE L1 5023 6159 -2 212 200 0 50 chr1 78296509 78296547 -164367806 + A-rich Low_complexity Low_complexity 21 57 0 6165 259 50 32 chr1 78296549 78298700 -164365653 + L1MCb LINE L1 2120 4230 -2334 2191 139 13 26 chr1 78298700 78299080 -164365273 - THE1C LTR MaLR 0 375 1 6165 259 50 32 chr1 78299080 78299237 -164365116 + L1MCb LINE L1 4230 4383 -2181 2212 113 0 7 chr1 78299237 78299538 -164364815 + AluSc SINE Alu 1 299 -10 6165 259 50 32 chr1 78299538 78300242 -164364111 + L1MCb LINE L1 4383 5165 -1399 5232 193 77 31 chr1 78300315 78301688 -164362665 + L1MC3 LINE L1 6179 7615 -170 260 191 202 24 chr1 78301714 78301798 -164362555 - MIR SINE MIR -4 258 160 427 229 89 95 chr1 78301930 78302109 -164362244 - MER5A DNA MER1_type -8 181 4 605 286 12 6 chr1 78302613 78302774 -164361579 + MIR SINE MIR 95 256 -6 285 365 100 18 chr1 78302823 78302993 -164361360 - MIR SINE MIR -46 216 33 190 289 0 0 chr1 78302996 78303041 -164361312 - L2 LINE L2 -18 3254 3210 216 355 166 19 chr1 78303219 78303484 -164360869 - L2 LINE L2 -24 3248 2945 2383 203 41 9 chr1 78303701 78304257 -164360096 - L1MD2 LINE L1 -1 6358 5785 2301 176 13 17 chr1 78304258 78304718 -164359635 - MER65C LTR ERV1 0 461 4 392 284 112 6 chr1 78304720 78304889 -164359464 - MER65C-int LTR ERV1 0 4871 4685 17682 184 32 18 chr1 78305025 78306772 -164357581 - L1PA13 LINE L1 -8 6806 5085 348 24 0 0 chr1 78306772 78306813 -164357540 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 17682 184 32 18 chr1 78306813 78310474 -164353879 - L1PA13 LINE L1 -1729 5085 1266 8426 53 4 0 chr1 78310474 78311477 -164352876 - LTR13 LTR ERVK 0 1007 1 17682 184 32 18 chr1 78311477 78312761 -164351592 - L1PA13 LINE L1 -5548 1266 1 996 215 96 28 chr1 78313108 78313722 -164350631 - MER65-int LTR ERV1 -1900 4021 2482 603 183 134 45 chr1 78313816 78314018 -164350335 - MER65-int LTR ERV1 -2865 3733 3514 366 260 24 67 chr1 78314251 78314459 -164349894 - MER65-int LTR ERV1 -2550 2573 2375 1136 194 55 34 chr1 78314572 78314854 -164349499 - MER65-int LTR ERV1 -2384 2487 2212 1577 187 38 3 chr1 78314854 78315143 -164349210 - AluJo SINE Alu -13 299 1 1136 194 55 34 chr1 78315143 78315266 -164349087 - MER65-int LTR ERV1 -2659 2212 1147 2310 145 66 7 chr1 78315276 78315731 -164348622 + LTR29 LTR ERV1 1 482 -140 953 234 87 40 chr1 78315909 78316298 -164348055 - MER65-int LTR ERV1 -2860 2011 704 1402 139 52 0 chr1 78316312 78316564 -164347789 - MER39B LTR ERV1 0 653 389 1529 120 9 0 chr1 78316565 78316798 -164347555 - MER4D LTR ERV1 -7 896 662 1717 136 22 31 chr1 78316820 78317137 -164347216 - MER4D LTR ERV1 -352 551 238 1188 149 96 58 chr1 78317137 78317398 -164346955 - AluJb SINE Alu -22 290 20 819 207 97 20 chr1 78317945 78318339 -164346014 - L1M LINE L1 -757 5389 5003 328 233 11 11 chr1 78318384 78318474 -164345879 - L1M4 LINE L1 -1208 4938 4849 885 118 0 22 chr1 78319522 78319657 -164344696 - FLAM_C SINE Alu 0 133 2 2042 140 0 0 chr1 78320380 78320672 -164343681 + AluJb SINE Alu 17 308 -4 297 0 0 0 chr1 78321320 78321353 -164343000 + (TA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr1 78323901 78323923 -164340430 + AT_rich Low_complexity Low_complexity 1 22 0 2449 37 17 0 chr1 78324055 78324349 -164340004 - AluY SINE Alu -12 299 1 25 0 0 0 chr1 78324411 78324436 -164339917 + AT_rich Low_complexity Low_complexity 1 25 0 297 0 0 0 chr1 78326099 78326132 -164338221 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1727 147 29 0 chr1 78326132 78326405 -164337948 - AluJb SINE Alu -30 282 2 534 244 178 0 chr1 78326550 78326730 -164337623 - MIR SINE MIR -46 216 5 2433 66 3 0 chr1 78326730 78327032 -164337321 - AluY SINE Alu -8 303 1 392 359 125 25 chr1 78327498 78328186 -164336167 - L2 LINE L2 -569 2745 1989 473 275 52 72 chr1 78328252 78328534 -164335819 + L1MDb LINE L1 75 293 -6247 216 0 0 0 chr1 78328534 78328558 -164335795 + (CA)n Simple_repeat Simple_repeat 1 24 0 473 275 52 72 chr1 78328558 78328653 -164335700 + L1MDb LINE L1 293 388 -6152 217 297 78 0 chr1 78328733 78328797 -164335556 + L3 LINE CR1 353 421 -1156 2362 144 27 25 chr1 78328800 78329244 -164335109 - MER65A LTR ERV1 0 445 1 686 188 35 54 chr1 78329244 78329370 -164334983 - LTR49 LTR ERV1 -5 590 498 2125 128 42 36 chr1 78329370 78329730 -164334623 - THE1B LTR MaLR -2 362 1 686 188 35 54 chr1 78329730 78329806 -164334547 - LTR49 LTR ERV1 -97 498 422 387 227 53 53 chr1 78329820 78329952 -164334401 - MER39 LTR ERV1 -575 132 1 1620 149 143 62 chr1 78330563 78331066 -164333287 + L1MDb LINE L1 1013 1556 -4987 194 333 61 61 chr1 78331197 78331329 -164333024 + L2 LINE L2 2952 3083 -189 205 296 68 68 chr1 78331530 78331692 -164332661 + MIR SINE MIR 59 220 -42 4512 189 42 34 chr1 78332006 78333358 -164330995 - L1MD2 LINE L1 -104 6255 4895 1452 139 89 18 chr1 78333358 78333638 -164330715 - MSTA LTR MaLR 0 428 129 16837 66 20 0 chr1 78333748 78336112 -164328241 + L1PA6 LINE L1 2157 4567 -1579 6802 53 21 2 chr1 78336212 78337368 -164326985 + L1PA6 LINE L1 4983 6154 0 1472 163 151 12 chr1 78337659 78337990 -164326363 + MSTA LTR MaLR 1 377 -51 1180 214 81 55 chr1 78337993 78338558 -164325795 + L1M4 LINE L1 973 1552 -4990 432 300 0 0 chr1 78338582 78338702 -164325651 + L1ME1 LINE L1 262 381 -6266 1208 105 6 0 chr1 78338702 78338864 -164325489 + AluY SINE Alu 1 163 -148 1649 117 4 4 chr1 78338864 78339095 -164325258 + AluSx SINE Alu 64 294 -18 693 235 81 0 chr1 78339218 78339465 -164324888 + L1ME1 LINE L1 3286 3552 -3092 2269 165 21 26 chr1 78339468 78339893 -164324460 - MSTA LTR MaLR -5 423 1 2233 236 26 25 chr1 78339895 78340575 -164323778 + L1ME1 LINE L1 3564 4247 -2397 2124 110 7 7 chr1 78340575 78340865 -164323488 + AluSx SINE Alu 1 290 -22 2233 236 26 25 chr1 78340865 78341024 -164323329 + L1ME1 LINE L1 4247 4404 -2240 1810 226 61 37 chr1 78341025 78341676 -164322677 + L1ME1 LINE L1 4520 5186 -1458 209 134 24 61 chr1 78341676 78341758 -164322595 + (TAA)n Simple_repeat Simple_repeat 2 80 0 2115 95 3 3 chr1 78341769 78342054 -164322299 - AluSq SINE Alu -28 285 1 726 218 73 53 chr1 78342054 78342297 -164322056 + L1ME1 LINE L1 5178 5415 -1229 1339 195 31 80 chr1 78342297 78342686 -164321667 + MLT1A2 LTR MaLR 1 370 -4 726 218 73 53 chr1 78342686 78342704 -164321649 + L1ME1 LINE L1 5415 5431 -1213 261 0 0 0 chr1 78342704 78342733 -164321620 + (CAA)n Simple_repeat Simple_repeat 2 30 0 726 218 73 53 chr1 78342733 78342773 -164321580 + L1ME1 LINE L1 5431 5486 -1158 2107 230 31 41 chr1 78342873 78343790 -164320563 + L1ME1 LINE L1 5460 6362 -302 182 37 37 0 chr1 78344445 78344472 -164319881 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 580 132 47 0 chr1 78344479 78344585 -164319768 - L1MA9 LINE L1 -22 6290 6180 7501 160 28 41 chr1 78344587 78345202 -164319151 - L1MA9 LINE L1 -231 6081 5459 1641 117 113 42 chr1 78345202 78345485 -164318868 - AluSx SINE Alu -9 303 1 7501 160 28 41 chr1 78345485 78347272 -164317081 - L1MA9 LINE L1 -853 5459 3713 230 68 45 0 chr1 78347295 78347339 -164317014 - MER2 DNA MER2_type -146 199 154 202 142 66 9 chr1 78347343 78347449 -164316904 + (TA)n Simple_repeat Simple_repeat 1 112 0 35 24 0 0 chr1 78347449 78347491 -164316862 + AT_rich Low_complexity Low_complexity 1 42 0 830 195 0 30 chr1 78347494 78347663 -164316690 - MER2 DNA MER2_type -181 164 1 1008 246 31 7 chr1 78347979 78348272 -164316081 + L1MB8 LINE L1 5875 6174 -4 2082 112 11 7 chr1 78349054 78349361 -164314992 + AluY SINE Alu 1 311 0 22 35 0 0 chr1 78349375 78349404 -164314949 + AT_rich Low_complexity Low_complexity 1 29 0 320 269 67 67 chr1 78349627 78349776 -164314577 + MIR3 SINE MIR 52 200 -8 283 299 13 0 chr1 78349866 78349943 -164314410 + MIR SINE MIR 50 127 -135 322 267 35 17 chr1 78349954 78350070 -164314283 + MIR SINE MIR 58 175 -87 270 167 45 15 chr1 78350099 78350165 -164314188 - MLT1J1 LTR MaLR -20 426 359 297 251 95 56 chr1 78350284 78350463 -164313890 - MLT1J LTR MaLR -325 186 1 226 360 0 0 chr1 78350463 78350552 -164313801 + MIR SINE MIR 170 258 -4 34 24 0 0 chr1 78350567 78350608 -164313745 + AT_rich Low_complexity Low_complexity 1 41 0 2201 182 112 4 chr1 78350661 78351116 -164313237 - MLT1D LTR MaLR 0 505 2 188 262 0 0 chr1 78351220 78351262 -164313091 + MIR SINE MIR 116 157 -105 376 157 29 0 chr1 78351263 78351333 -164313020 - LTR36 LTR ERV1 0 611 540 5253 95 15 4 chr1 78351334 78352124 -164312229 + L1PA13 LINE L1 5364 6162 -1 2154 145 42 92 chr1 78352130 78352703 -164311650 - LTR38B LTR ERV1 -65 545 2 223 245 143 41 chr1 78352704 78352802 -164311551 + MIR SINE MIR 155 262 0 2277 115 0 0 chr1 78353372 78353676 -164310677 + AluSx SINE Alu 1 304 -8 24 77 0 0 chr1 78354377 78354429 -164309924 + AT_rich Low_complexity Low_complexity 1 52 0 376 300 22 40 chr1 78357204 78357427 -164306926 - HERVL74 LTR ERVL -2357 3328 3110 4174 162 34 19 chr1 78359162 78360019 -164304334 - L1MA9 LINE L1 -70 6242 5373 2142 119 29 95 chr1 78361057 78361509 -164302844 + Tigger2 DNA MER2_type 2238 2659 -59 2787 176 11 21 chr1 78361512 78362127 -164302226 - L1PB1 LINE L1 -1724 4422 3814 5938 144 12 4 chr1 78362127 78363821 -164300532 + L1PB1 LINE L1 4439 6146 -5 321 288 0 0 chr1 78363827 78363900 -164300453 + Tigger2 DNA MER2_type 2635 2707 -11 * 1271 219 98 34 chr1 78363899 78364306 -164300047 + MLT1D LTR MaLR 73 505 0 4850 247 53 17 chr1 78364310 78364732 -164299621 - L1M4 LINE L1 -1443 4703 4297 2687 102 11 0 chr1 78364732 78365103 -164299250 + THE1C LTR MaLR 1 375 0 4850 247 53 17 chr1 78365103 78366479 -164297874 - L1M4 LINE L1 -1849 4297 2841 1065 255 49 77 chr1 78366697 78367207 -164297146 - MLT1J LTR MaLR -15 496 1 667 157 112 11 chr1 78367585 78367763 -164296590 + MER33 DNA MER1_type 20 215 -109 299 238 171 29 chr1 78368610 78368715 -164295638 + MIR3 SINE MIR 55 174 -34 395 369 50 36 chr1 78368852 78369153 -164295200 + L2 LINE L2 2967 3271 -1 476 256 38 23 chr1 78369154 78369287 -164295066 - MIR SINE MIR -117 145 11 230 51 51 0 chr1 78369795 78369834 -164294519 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 526 123 0 0 chr1 78369846 78369919 -164294434 - AluSg/x SINE Alu -24 285 213 548 272 39 107 chr1 78369990 78370299 -164294054 - L2 LINE L2 0 3313 3026 282 303 62 35 chr1 78370266 78370411 -164293942 - MIR SINE MIR -31 231 83 * 194 385 167 0 chr1 78370536 78370632 -164293721 - L2 LINE L2 -15 3257 3146 188 318 0 16 chr1 78370651 78370714 -164293639 + L2 LINE L2 3211 3272 0 273 278 26 26 chr1 78370762 78370877 -164293476 - MER5A DNA MER1_type -37 152 38 1423 213 19 53 chr1 78370881 78371294 -164293059 - MER63B DNA MER1_type -34 402 4 354 209 58 0 chr1 78371316 78371413 -164292940 + MIR SINE MIR 27 132 -76 2168 104 0 7 chr1 78371491 78371802 -164292551 + AluSx SINE Alu 1 309 0 2321 131 0 0 chr1 78371808 78372120 -164292233 + AluSx SINE Alu 1 312 0 2277 168 37 33 chr1 78372381 78372900 -164291453 - Charlie1b DNA MER1_type -1 522 2 353 329 85 37 chr1 78373002 78373297 -164291056 - L2 LINE L2 -556 2758 2364 1961 163 22 11 chr1 78373978 78374339 -164290014 - MLT1A1 LTR MaLR 0 365 1 611 317 20 15 chr1 78374475 78374674 -164289679 - MIR SINE MIR -3 259 60 232 209 0 0 chr1 78374840 78374883 -164289470 + L2 LINE L2 3266 3308 -5 345 234 103 7 chr1 78375176 78375321 -164289032 - L1ME4a LINE L1 0 6121 5963 405 58 0 0 chr1 78375356 78375408 -164288945 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 224 264 0 0 chr1 78377315 78377368 -164286985 - L2 LINE L2 -11 3261 3209 225 370 64 23 chr1 78377462 78377681 -164286672 + L2 LINE L2 2531 2758 -556 239 338 167 15 chr1 78379504 78379708 -164284645 + L2 LINE L2 2521 2755 -559 1104 224 5 88 chr1 78379726 78380133 -164284220 + MLT2C1 LTR ERVL 25 397 0 2115 133 7 0 chr1 78380371 78380671 -164283682 + AluSq SINE Alu 3 304 -9 6766 153 31 28 chr1 78380724 78382032 -164282321 + L1P LINE L1 12 1323 -4823 211 216 34 80 chr1 78382139 78382227 -164282126 + MIR SINE MIR 123 206 -56 496 126 48 19 chr1 78382402 78382505 -164281848 - MER53 DNA DNA -83 106 1 536 318 120 9 chr1 78382646 78382879 -164281474 + MIR SINE MIR 4 262 0 210 333 109 6 chr1 78383214 78383397 -164280956 + L2 LINE L2 2188 2389 -925 1365 218 61 27 chr1 78383529 78384159 -164280194 + MLT1E3 LTR MaLR 1 624 0 184 316 216 41 chr1 78384213 78384533 -164279820 + L2 LINE L2 2601 2976 -338 380 329 82 0 chr1 78385209 78385355 -164278998 - MIR3 SINE MIR -15 193 36 1769 173 89 3 chr1 78385419 78385755 -164278598 + MLT1A1 LTR MaLR 1 365 0 1848 142 60 38 chr1 78386082 78386449 -164277904 - THE1C LTR MaLR 0 375 1 1929 147 0 7 chr1 78386481 78386773 -164277580 + AluJb SINE Alu 1 290 -22 383 298 124 33 chr1 78386840 78387022 -164277331 + L1ME LINE L1 4526 4737 -1409 321 258 55 66 chr1 78387022 78387204 -164277149 - MER104 DNA MER2_type 0 180 1 383 298 124 33 chr1 78387204 78387263 -164277090 + L1ME LINE L1 4737 4789 -1357 8421 149 44 8 chr1 78387299 78390445 -164273908 + L1MA3 LINE L1 2154 5411 -2154 6661 97 11 40 chr1 78390435 78390824 -164273529 + L1MA3 LINE L1 6563 6962 -762 * 2518 104 14 19 chr1 78390824 78391190 -164273163 + THE1B LTR MaLR 1 364 0 6661 97 11 40 chr1 78391190 78391989 -164272364 + L1MA3 LINE L1 6962 7724 0 547 326 58 17 chr1 78392050 78392409 -164271944 + L1ME LINE L1 4877 5250 -896 1945 143 7 0 chr1 78392468 78392762 -164271591 - AluJb SINE Alu -16 296 1 446 206 5 121 chr1 78392771 78392970 -164271383 + MER104 DNA Tc2 1 176 -4 316 281 42 66 chr1 78392973 78393289 -164271064 + L1ME LINE L1 5342 5644 -477 580 302 181 42 chr1 78393302 78393755 -164270598 + MLT1K LTR MaLR 16 531 -57 1943 175 0 34 chr1 78393769 78394147 -164270206 - MLT1A1 LTR MaLR 0 365 1 249 172 47 47 chr1 78394168 78394232 -164270121 + MLT1L LTR MaLR 552 615 0 291 241 52 52 chr1 78394232 78394348 -164270005 + L1ME LINE L1 5647 5762 -359 1117 239 24 8 chr1 78394360 78394611 -164269742 - MIR SINE MIR -5 257 3 3484 161 59 34 chr1 78394732 78395490 -164268863 + L1MCa LINE L1 8 784 -5642 590 148 9 0 chr1 78395500 78395615 -164268738 + L1MCa LINE L1 924 1039 -5387 2084 125 147 5 chr1 78395669 78396044 -164268309 - MSTA LTR MaLR 0 428 1 186 43 0 0 chr1 78396520 78396543 -164267810 + (CA)n Simple_repeat Simple_repeat 2 24 0 234 167 0 0 chr1 78396703 78396751 -164267602 + L1MA10 LINE L1 6280 6327 -7 221 0 35 0 chr1 78396881 78396910 -164267443 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 316 191 24 24 chr1 78398727 78398811 -164265542 + LTR33A LTR ERVL 440 523 0 3382 111 44 12 chr1 78399661 78399698 -164264655 - L1MA4A LINE L1 -4 6299 6265 2863 90 0 5 chr1 78399698 78400075 -164264278 - THE1C LTR MaLR 0 375 1 3382 111 44 12 chr1 78400075 78400604 -164263749 - L1MA4A LINE L1 -38 6265 5715 232 31 0 0 chr1 78400647 78400679 -164263674 + HY1 scRNA scRNA 80 111 -1 1320 38 0 6 chr1 78400693 78400853 -164263500 + L1PA3 LINE L1 5994 6152 -3 260 290 0 0 chr1 78401593 78401662 -164262691 + (TGGA)n Simple_repeat Simple_repeat 1 69 0 517 221 201 0 chr1 78401991 78402140 -164262213 + MER5A DNA MER1_type 11 189 0 2002 279 65 54 chr1 78402860 78403589 -164260764 - L1M4c LINE L1 -4291 2534 1814 2268 92 0 20 chr1 78403589 78403892 -164260461 - AluY SINE Alu -14 297 1 2002 279 65 54 chr1 78403892 78404624 -164259729 - L1M4c LINE L1 -5011 1814 877 1541 161 0 84 chr1 78404625 78404765 -164259588 - AluJo SINE Alu -10 302 199 2159 118 14 3 chr1 78404765 78405061 -164259292 + AluSq SINE Alu 1 299 -14 1541 161 0 84 chr1 78405061 78405219 -164259134 - AluJo SINE Alu -113 199 29 258 279 54 45 chr1 78405262 78405373 -164258980 - L1M4c LINE L1 -5651 891 780 321 277 8 17 chr1 78405752 78405871 -164258482 - L1M4c LINE L1 -6360 182 65 269 285 78 83 chr1 78406926 78407119 -164257234 - MLT1K LTR MaLR -394 194 3 275 246 34 59 chr1 78407141 78407259 -164257094 + MER103 DNA DNA 51 165 -1 345 324 83 7 chr1 78407823 78407968 -164256385 + MIR SINE MIR 15 170 -92 484 288 68 32 chr1 78408223 78408473 -164255880 + MIR SINE MIR 2 260 -2 956 294 159 22 chr1 78409285 78410089 -164254264 + L2 LINE L2 2393 3313 0 1178 190 58 19 chr1 78410874 78411294 -164253059 - MLT1D LTR MaLR 0 505 1 555 235 13 47 chr1 78411605 78411754 -164252599 + MIR SINE MIR 1 144 -118 336 236 14 0 chr1 78411756 78411828 -164252525 - L2 LINE L2 -1 3312 3240 187 243 294 40 chr1 78412054 78412231 -164252122 - L2 LINE L2 -61 3252 3031 207 162 0 0 chr1 78412348 78412385 -164251968 + (CA)n Simple_repeat Simple_repeat 2 38 0 354 267 50 20 chr1 78414031 78414132 -164250221 + L2 LINE L2 3210 3313 0 192 265 235 20 chr1 78414182 78414284 -164250069 + MIR SINE MIR 21 144 -64 918 281 74 62 chr1 78414976 78415558 -164248795 + L2 LINE L2 2726 3313 0 1141 170 36 31 chr1 78415693 78415916 -164248437 - AluJo SINE Alu -3 309 86 603 179 93 12 chr1 78416478 78416640 -164247713 - MER104 DNA Tc2 0 180 6 182 377 14 0 chr1 78416642 78416711 -164247642 + MIR SINE MIR 82 151 -111 199 254 136 0 chr1 78416715 78416774 -164247579 - L2 LINE L2 -1 3312 3246 340 239 64 9 chr1 78416776 78416885 -164247468 - LTR67 LTR ERVL -14 543 429 265 182 19 9 chr1 78417321 78417431 -164246922 + GA-rich Low_complexity Low_complexity 1 111 0 477 179 19 19 chr1 78417491 78417597 -164246756 + L2 LINE L2 1914 2019 -1295 1415 240 109 9 chr1 78417698 78418148 -164246205 + L2 LINE L2 2257 2751 -563 866 259 92 63 chr1 78418221 78418603 -164245750 + L2 LINE L2 2915 3307 -6 1709 154 7 7 chr1 78419005 78419290 -164245063 + AluJo SINE Alu 1 285 -27 243 0 0 0 chr1 78419290 78419317 -164245036 + (TA)n Simple_repeat Simple_repeat 2 28 0 534 212 43 43 chr1 78420020 78420204 -164244149 - MIR SINE MIR 0 262 79 419 297 88 33 chr1 78420729 78421002 -164243351 + L2 LINE L2 2357 2644 -670 * 445 316 84 77 chr1 78420987 78421440 -164242913 + L2 LINE L2 2809 3264 -49 205 152 0 0 chr1 78421504 78421537 -164242816 + (CTA)n Simple_repeat Simple_repeat 3 35 0 4221 184 41 17 chr1 78421580 78422460 -164241893 + L1MD1 LINE L1 5342 6242 0 875 122 38 23 chr1 78422503 78422634 -164241719 + FLAM_C SINE Alu 1 133 0 449 298 83 6 chr1 78422634 78422802 -164241551 - ERVL LTR ERVL -2740 3024 2844 1334 257 46 7 chr1 78422865 78423172 -164241181 - Zaphod DNA AcHobo -3624 407 89 1416 212 158 25 chr1 78423498 78423903 -164240450 - LTR33 LTR ERVL -16 505 47 189 121 0 0 chr1 78424178 78424211 -164240142 + (TCTTG)n Simple_repeat Simple_repeat 5 37 0 446 211 89 16 chr1 78424787 78424910 -164239443 - MER112 DNA MER1_type 0 260 129 1992 115 3 67 chr1 78424924 78425254 -164239099 + AluSc SINE Alu 1 309 0 187 291 116 12 chr1 78426081 78426167 -164238186 + MIR3 SINE MIR 72 166 -42 * 433 269 93 0 chr1 78426164 78426272 -164238081 + MIR SINE MIR 128 245 -17 731 233 43 163 chr1 78426725 78427115 -164237238 + HAL1 LINE L1 8 324 -2183 2409 117 135 13 chr1 78427115 78427500 -164236853 - MSTB1 LTR MaLR 0 432 1 731 233 43 163 chr1 78427500 78427619 -164236734 + HAL1 LINE L1 324 456 -2051 642 158 0 68 chr1 78427619 78427752 -164236601 + L2 LINE L2 3190 3313 0 610 246 146 93 chr1 78427758 78428265 -164236088 + HAL1 LINE L1 503 1036 -1471 269 167 0 0 chr1 78428658 78428700 -164235653 - HERVS71 LTR ERV1 -429 8549 8508 186 43 0 0 chr1 78428700 78428723 -164235630 + (A)n Simple_repeat Simple_repeat 1 23 0 455 286 34 20 chr1 78428845 78428992 -164235361 - MLT1K LTR MaLR 0 588 440 204 139 28 0 chr1 78429056 78429092 -164235261 + (TG)n Simple_repeat Simple_repeat 2 38 0 323 250 65 0 chr1 78429776 78429868 -164234485 - Charlie7 DNA MER1_type -2 2610 2513 612 214 7 29 chr1 78430542 78430682 -164233671 - L2 LINE L2 -1 3312 3176 2563 264 47 6 chr1 78430740 78431447 -164232906 + L1ME LINE L1 37 772 -5624 291 274 0 0 chr1 78431499 78431583 -164232770 + L1ME LINE L1 5432 5515 -724 21 0 0 0 chr1 78431851 78431872 -164232481 + AT_rich Low_complexity Low_complexity 1 21 0 254 185 31 0 chr1 78432735 78432800 -164231553 + GA-rich Low_complexity Low_complexity 6 72 0 997 218 51 14 chr1 78432998 78433214 -164231139 - MER58A DNA MER1_type 0 224 1 279 333 0 0 chr1 78433647 78433719 -164230634 - L3 LINE CR1 -111 1466 1395 22 0 0 0 chr1 78434217 78434239 -164230114 + AT_rich Low_complexity Low_complexity 1 22 0 459 262 49 16 chr1 78434512 78434634 -164229719 - MIR3 SINE MIR -33 175 50 261 265 0 0 chr1 78434762 78434830 -164229523 + A-rich Low_complexity Low_complexity 1 68 0 431 296 68 51 chr1 78434863 78435157 -164229196 - LTR16C LTR ERVL -189 302 4 459 270 286 0 chr1 78435398 78435587 -164228766 + MIR SINE MIR 19 261 -1 880 174 277 0 chr1 78435664 78435917 -164228436 - MER5C DNA MER1_type 0 324 2 305 287 46 46 chr1 78436698 78436806 -164227547 + L2 LINE L2 3158 3265 -7 23 0 0 0 chr1 78437221 78437244 -164227109 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 78437454 78437479 -164226874 + GC_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr1 78437505 78437533 -164226820 + (GGA)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr1 78437646 78437676 -164226677 + GC_rich Low_complexity Low_complexity 1 30 0 183 162 0 0 chr1 78437730 78437767 -164226586 + GA-rich Low_complexity Low_complexity 1 37 0 183 100 0 0 chr1 78437924 78437954 -164226399 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr1 78438328 78438349 -164226004 + AT_rich Low_complexity Low_complexity 1 21 0 311 309 86 20 chr1 78439904 78440056 -164224297 + MIR SINE MIR 98 259 -3 225 65 0 0 chr1 78440163 78440194 -164224159 + (TG)n Simple_repeat Simple_repeat 1 31 0 2355 83 3 3 chr1 78440648 78440949 -164223404 + AluSp SINE Alu 2 302 -11 410 197 34 31 chr1 78441239 78441387 -164222966 + MIR SINE MIR 56 252 -10 225 204 20 0 chr1 78441407 78441456 -164222897 + L1ME4a LINE L1 6069 6118 -3 184 257 188 40 chr1 78442446 78442547 -164221806 - MIR SINE MIR -72 136 21 2414 87 0 0 chr1 78443227 78443527 -164220826 + AluY SINE Alu 1 300 -11 557 290 45 19 chr1 78444512 78444667 -164219686 + MER91A DNA MER1_type 1 159 -37 284 259 17 0 chr1 78444699 78444757 -164219596 + MER91A DNA MER1_type 138 196 0 2066 146 0 0 chr1 78446423 78446724 -164217629 - AluJb SINE Alu -11 301 1 674 232 42 75 chr1 78447248 78447649 -164216704 - L1M4 LINE L1 -1640 4506 4119 * 739 255 56 70 chr1 78447634 78448203 -164216150 - L1MEc LINE L1 -4822 1439 700 546 324 28 6 chr1 78449053 78449229 -164215124 - MIR SINE MIR -81 181 2 217 302 164 51 chr1 78449939 78450484 -164213869 + L2 LINE L2 722 1349 -1965 1488 232 51 86 chr1 78450484 78451009 -164213344 - MLT1J LTR MaLR -4 507 1 217 302 164 51 chr1 78451009 78451093 -164213260 + L2 LINE L2 1349 1422 -1892 219 282 29 87 chr1 78451310 78451413 -164212940 - MIR SINE MIR -132 130 34 1027 122 6 6 chr1 78451565 78451721 -164212632 - L1M2 LINE L1 -542 5758 5603 491 333 53 9 chr1 78452219 78452444 -164211909 - MIR SINE MIR 0 262 28 2015 173 5 52 chr1 78453267 78453667 -164210686 - MLT1B LTR MaLR 0 390 10 232 208 73 73 chr1 78453740 78453836 -164210517 - MER5B DNA MER1_type -30 148 53 359 303 46 74 chr1 78453990 78454375 -164209978 - L2 LINE L2 -217 3055 2689 236 278 188 0 chr1 78454422 78454566 -164209787 + L2 LINE L2 2641 2811 -503 760 55 0 0 chr1 78454601 78454692 -164209661 - AluSg/x SINE Alu -5 304 214 1615 123 40 16 chr1 78454692 78454944 -164209409 - AluSq SINE Alu -54 259 2 2202 122 0 0 chr1 78455236 78455540 -164208813 - AluSx SINE Alu -8 304 1 250 310 126 0 chr1 78455540 78455627 -164208726 + L2 LINE L2 3173 3270 -2 469 354 51 0 chr1 78455638 78455816 -164208537 + MIR3 SINE MIR 14 200 -8 431 264 34 27 chr1 78456192 78456340 -164208013 - L2 LINE L2 0 3313 3165 446 191 149 21 chr1 78456407 78456548 -164207805 + L1MA10 LINE L1 6176 6334 0 317 24 24 0 chr1 78456581 78456623 -164207730 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 359 11 0 chr1 78456715 78456807 -164207546 - MIR3 SINE MIR -35 173 81 471 349 43 9 chr1 78456831 78457063 -164207290 - MIR SINE MIR 0 262 23 905 158 0 0 chr1 78457165 78457304 -164207049 + L1MB5 LINE L1 6036 6174 0 904 220 77 138 chr1 78457869 78458405 -164205948 + MLT1G LTR MaLR 88 590 0 464 291 38 37 chr1 78458407 78458624 -164205729 + MIR SINE MIR 20 239 -23 256 216 13 137 chr1 78460036 78460116 -164204237 - MIR SINE MIR -32 176 106 1337 243 34 21 chr1 78460158 78460537 -164203816 - MLT1C LTR MaLR -25 442 59 3387 144 50 30 chr1 78460924 78461526 -164202827 + LTR18B LTR ERVL 1 614 0 329 88 35 0 chr1 78461784 78461841 -164202512 + GA-rich Low_complexity Low_complexity 2 60 0 326 245 78 29 chr1 78461876 78461978 -164202375 + MLT1D LTR MaLR 72 178 -327 26 82 0 0 chr1 78461984 78462045 -164202308 + AT_rich Low_complexity Low_complexity 1 61 0 1491 196 55 10 chr1 78462048 78462359 -164201994 + MLT1D LTR MaLR 181 505 0 184 281 53 0 chr1 78462365 78462422 -164201931 + MIR SINE MIR 73 132 -130 249 33 0 0 chr1 78462424 78462454 -164201899 + (TAA)n Simple_repeat Simple_repeat 3 32 0 2070 167 23 26 chr1 78462514 78462904 -164201449 + MLT1B LTR MaLR 2 390 0 2128 299 60 39 chr1 78463126 78464082 -164200271 + HAL1 LINE L1 3 978 -1529 376 303 27 29 chr1 78464721 78464866 -164199487 - MIR SINE MIR -62 146 17 286 310 0 0 chr1 78465237 78465324 -164199029 + MER117 DNA MER1_type 72 158 -39 2836 164 13 0 chr1 78465394 78465846 -164198507 + MER34B LTR ERV1 79 536 -29 1625 215 21 0 chr1 78465918 78466244 -164198109 - LTR53 LTR ERVL 0 519 187 187 294 110 37 chr1 78466592 78466701 -164197652 - MIR SINE MIR -76 132 16 197 316 0 0 chr1 78466741 78466798 -164197555 + L2 LINE L2 3257 3313 0 273 57 0 0 chr1 78466893 78466928 -164197425 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 659 348 63 40 chr1 78466987 78467624 -164196729 - L2 LINE L2 -103 3210 2554 2392 133 39 21 chr1 78468112 78468495 -164195858 - MLT1B LTR MaLR 0 390 1 337 291 73 61 chr1 78468545 78468641 -164195712 - MIR SINE MIR -71 191 91 1942 194 47 14 chr1 78468641 78469002 -164195351 - MLT1A2 LTR MaLR -1 373 1 337 291 73 61 chr1 78469002 78469070 -164195283 - MIR SINE MIR -171 91 25 2500 219 20 4 chr1 78469363 78469857 -164194496 - MLT1D LTR MaLR -1 504 3 2385 181 15 8 chr1 78470409 78470802 -164193551 - MSTD LTR MaLR 0 396 1 345 289 0 11 chr1 78470805 78470895 -164193458 + MLT1I LTR MaLR 44 132 -277 230 289 33 22 chr1 78471323 78471413 -164192940 + L2 LINE L2 3182 3272 0 514 311 77 19 chr1 78471662 78472025 -164192328 + L1MEc LINE L1 1977 2360 -4036 2178 134 6 6 chr1 78472050 78472393 -164191960 + L1MC1 LINE L1 5841 6183 -150 612 218 49 53 chr1 78472483 78472733 -164191620 - L1ME3A LINE L1 -212 5966 5726 293 299 52 15 chr1 78473037 78473171 -164191182 - L2 LINE L2 -202 3070 2932 306 260 183 0 chr1 78473794 78473898 -164190455 - L2 LINE L2 0 3313 3191 271 351 144 20 chr1 78474055 78474354 -164189999 - L2 LINE L2 -340 2974 2639 512 287 87 20 chr1 78474781 78475003 -164189350 + MIR SINE MIR 1 238 -24 865 221 9 18 chr1 78475102 78475319 -164189034 + L1PA8 LINE L1 1 215 -6648 * 11397 157 25 21 chr1 78475297 78475995 -164188358 + L1PA8 LINE L1 1392 2086 -4776 7638 52 9 4 chr1 78475995 78477245 -164187108 + L1PA8 LINE L1 5632 6886 -2 11397 157 25 21 chr1 78477245 78480257 -164184096 + L1PA8 LINE L1 2086 5113 -1749 429 233 125 3 chr1 78480387 78480536 -164183817 + MER3 DNA MER1_type 9 123 -86 6224 153 18 6 chr1 78480537 78480879 -164183474 - L1PB1 LINE L1 -7 6144 5808 279 0 0 0 chr1 78480879 78480910 -164183443 + (TA)n Simple_repeat Simple_repeat 1 31 0 6224 153 18 6 chr1 78480910 78482287 -164182066 - L1PB1 LINE L1 -343 5808 4395 396 0 0 0 chr1 78482287 78482331 -164182022 + (TTA)n Simple_repeat Simple_repeat 2 45 0 6224 153 18 6 chr1 78482331 78482601 -164181752 - L1PB1 LINE L1 -1756 4395 4130 2637 130 30 62 chr1 78482641 78483110 -164181243 + LTR32 LTR ERVL 13 466 -5 225 0 0 0 chr1 78483770 78483795 -164180558 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 202 227 0 0 chr1 78484157 78484201 -164180152 - L2 LINE L2 -8 3305 3262 4997 162 29 12 chr1 78485505 78486505 -164177848 + L1MB7 LINE L1 5170 6184 0 908 257 58 24 chr1 78486576 78486927 -164177426 - L1MEd LINE L1 -4866 1253 932 346 229 84 23 chr1 78487402 78487533 -164176820 - LTR68 LTR ERV1 -580 160 22 1732 151 27 17 chr1 78487534 78487832 -164176521 + AluSx SINE Alu 1 301 -11 466 222 133 0 chr1 78488147 78488174 -164176179 - L1MA10 LINE L1 -13 6321 6295 1164 241 22 16 chr1 78488174 78488485 -164175868 - L1ME1 LINE L1 -46 6120 5808 1487 120 22 4 chr1 78489033 78489270 -164175083 + L1MC1 LINE L1 6075 6310 -23 573 254 0 0 chr1 78489345 78489455 -164174898 - MER81 DNA DNA -4 110 1 242 319 214 16 chr1 78489456 78489829 -164174524 + L2 LINE L2 1862 2308 -1006 328 296 95 17 chr1 78490610 78490789 -164173564 + MIR SINE MIR 20 212 -50 525 294 125 27 chr1 78491154 78491476 -164172877 + L2 LINE L2 639 1011 -2303 184 29 29 29 chr1 78491476 78491510 -164172843 + (TTATA)n Simple_repeat Simple_repeat 1 34 0 525 294 125 27 chr1 78491510 78491595 -164172758 + L2 LINE L2 1011 1086 -2228 415 231 120 19 chr1 78491713 78491821 -164172532 + MER69 DNA AcHobo 1 119 -1107 223 272 24 64 chr1 78493062 78493187 -164171166 - MIR SINE MIR -26 236 117 459 222 20 0 chr1 78493414 78493513 -164170840 + MER5B DNA MER1_type 1 101 -77 785 288 55 35 chr1 78494183 78494822 -164169531 + L1MC/D LINE L1 5103 5753 -743 429 167 104 10 chr1 78494928 78495024 -164169329 + MIR SINE MIR 147 251 -11 195 388 58 19 chr1 78496616 78496719 -164167634 - L2 LINE L2 -27 3245 3139 1846 153 20 3 chr1 78496978 78497272 -164167081 + AluJo SINE Alu 3 301 -11 375 317 42 8 chr1 78498076 78498196 -164166157 + L2 LINE L2 3145 3268 -4 456 19 0 0 chr1 78498208 78498261 -164166092 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 397 305 56 14 chr1 78498293 78498456 -164165897 + MIR SINE MIR 30 197 -36 528 255 143 6 chr1 78499744 78499905 -164164448 + MIR SINE MIR 2 184 -78 336 200 118 0 chr1 78499924 78500009 -164164344 + L1M4 LINE L1 2731 2825 -3321 2104 138 3 3 chr1 78500079 78500391 -164163962 - AluSx SINE Alu 0 312 1 368 163 12 47 chr1 78500628 78500714 -164163639 + MLT2B3 LTR ERVL 3 85 -469 2089 200 30 63 chr1 78500790 78501285 -164163068 + MLT2B3 LTR ERVL 71 549 -5 475 302 140 9 chr1 78501293 78501515 -164162838 + MIR SINE MIR 1 251 -11 1048 302 48 10 chr1 78501517 78501933 -164162420 + LTR16C LTR ERVL 4 435 -56 2022 182 100 1 chr1 78501933 78502406 -164161947 - MER44D DNA MER2_type 0 605 1 242 276 0 0 chr1 78502406 78502464 -164161889 + LTR16C LTR ERVL 434 491 0 285 217 0 29 chr1 78502513 78502582 -164161771 - L3 LINE CR1 -182 1395 1329 611 204 27 14 chr1 78502584 78502731 -164161622 + MLT1K LTR MaLR 440 588 0 329 338 76 13 chr1 78502865 78503022 -164161331 - L2 LINE L2 -204 3068 2902 7496 130 49 8 chr1 78503164 78504347 -164160006 - Tigger3b DNA MER2_type 0 1231 1 515 259 60 58 chr1 78504469 78504817 -164159536 + L1MEc LINE L1 1734 2082 -4314 664 140 0 0 chr1 78504835 78504928 -164159425 + AluS SINE Alu 2 93 -220 2229 85 7 0 chr1 78505028 78505046 -164159307 - AluSp SINE Alu 0 373 357 333 68 0 0 chr1 78505046 78505090 -164159263 + (CTTTA)n Simple_repeat Simple_repeat 2 45 0 2229 85 7 0 chr1 78505090 78505399 -164158954 - AluSp SINE Alu -16 357 1 342 0 0 0 chr1 78505403 78505441 -164158912 + (TG)n Simple_repeat Simple_repeat 1 38 0 752 175 0 0 chr1 78505443 78505557 -164158796 - FLAM_C SINE Alu -19 114 1 622 276 0 0 chr1 78506090 78506224 -164158129 + L2 LINE L2 3139 3272 0 396 273 180 7 chr1 78506303 78506442 -164157911 + MIR3 SINE MIR 19 181 -27 471 219 19 0 chr1 78507605 78507710 -164156643 + LTR49-int LTR ERV1 3352 3458 -2873 2020 188 89 83 chr1 78507809 78508985 -164155368 + LTR49-int LTR ERV1 1707 4294 -1976 436 173 0 13 chr1 78509042 78509117 -164155236 + FLAM_C SINE Alu 36 109 -34 243 0 0 0 chr1 78509120 78509147 -164155206 + (TC)n Simple_repeat Simple_repeat 2 28 0 191 36 36 0 chr1 78509148 78509176 -164155177 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4470 165 16 21 chr1 78509180 78510077 -164154276 + LTR49-int LTR ERV1 4930 5821 -1716 5994 183 29 45 chr1 78510405 78511748 -164152605 + LTR49-int LTR ERV1 5824 7144 -393 661 172 128 41 chr1 78511748 78512067 -164152286 + LTR54B LTR ERV1 1 386 -112 476 123 0 0 chr1 78512134 78512207 -164152146 + MER57A LTR ERV1 1 73 -330 2056 105 23 43 chr1 78512226 78512530 -164151823 - AluSx SINE Alu -14 298 1 292 42 104 0 chr1 78512566 78512614 -164151739 + MER57A LTR ERV1 351 403 0 684 245 70 48 chr1 78512638 78512952 -164151401 - MER34 LTR ERV1 -184 523 1 242 326 112 0 chr1 78513016 78513114 -164151239 - L2 LINE L2 0 3313 3205 240 293 95 0 chr1 78513582 78513698 -164150655 + MER103 DNA DNA 9 135 -31 5705 86 14 5 chr1 78514048 78514878 -164149475 + L1PA13 LINE L1 5307 6144 -19 21 0 0 0 chr1 78514880 78514901 -164149452 + AT_rich Low_complexity Low_complexity 1 21 0 2043 91 17 20 chr1 78515900 78516197 -164148156 - AluSc SINE Alu -13 296 1 300 247 0 0 chr1 78516200 78516273 -164148080 - L1MC5 LINE L1 -178 7783 7711 325 241 100 47 chr1 78516345 78516515 -164147838 - L1MC5 LINE L1 -342 7619 7441 738 249 204 20 chr1 78516600 78517002 -164147351 + MLT1J LTR MaLR 3 478 -33 1973 148 3 0 chr1 78517010 78517313 -164147040 - AluJb SINE Alu -8 304 1 279 104 21 0 chr1 78517318 78517366 -164146987 + MLT1J LTR MaLR 440 488 -23 409 324 70 0 chr1 78517533 78517675 -164146678 - L2 LINE L2 0 3272 3121 298 327 19 19 chr1 78517874 78517981 -164146372 - L2 LINE L2 -50 3222 3116 25 0 0 0 chr1 78518040 78518065 -164146288 + AT_rich Low_complexity Low_complexity 1 25 0 840 209 76 14 chr1 78518157 78518367 -164145986 - MIR SINE MIR -32 230 8 347 316 109 78 chr1 78518418 78518921 -164145432 - L2 LINE L2 -703 2611 2093 2328 105 0 0 chr1 78518921 78519217 -164145136 + AluSx SINE Alu 1 296 -16 531 192 40 0 chr1 78519410 78519509 -164144844 - MER6B DNA MER2_type -173 103 1 5907 244 45 11 chr1 78519910 78520617 -164143736 + L1M4c LINE L1 2320 3001 -3381 2386 109 0 0 chr1 78520617 78520928 -164143425 + AluSq SINE Alu 1 311 -2 5907 244 45 11 chr1 78520928 78522228 -164142125 + L1M4c LINE L1 3001 4398 -1984 487 231 0 19 chr1 78522332 78522436 -164141917 - L2 LINE L2 -4 3309 3208 372 59 0 0 chr1 78522443 78522494 -164141859 + (CA)n Simple_repeat Simple_repeat 2 52 0 1020 301 55 12 chr1 78522498 78522913 -164141440 + LTR33 LTR ERVL 31 463 -58 5654 207 45 29 chr1 78522920 78524367 -164139986 - MER45R DNA AcHobo -111 1470 1 744 323 15 50 chr1 78524381 78524780 -164139573 - L2 LINE L2 -101 3212 2828 180 225 112 34 chr1 78524881 78524970 -164139383 + L2 LINE L2 2946 3041 -231 427 252 39 45 chr1 78525107 78525262 -164139091 + L2 LINE L2 3159 3312 -1 288 53 0 0 chr1 78525430 78525468 -164138885 + (CA)n Simple_repeat Simple_repeat 2 39 0 400 288 65 35 chr1 78525543 78525713 -164138640 + L2 LINE L2 3098 3272 0 22 35 0 0 chr1 78525809 78525838 -164138515 + AT_rich Low_complexity Low_complexity 1 29 0 1828 169 0 0 chr1 78526236 78526532 -164137821 + AluJb SINE Alu 1 296 -16 294 269 221 7 chr1 78526753 78526902 -164137451 - MIR3 SINE MIR 0 208 28 185 287 23 46 chr1 78527678 78527765 -164136588 + L2 LINE L2 3008 3092 -180 366 318 108 0 chr1 78527955 78528103 -164136250 + MIR SINE MIR 89 252 -10 552 244 80 13 chr1 78528193 78528418 -164135935 - MER46C DNA MER2_type -98 240 1 392 363 62 36 chr1 78529085 78529703 -164134650 - L2 LINE L2 -1698 1616 983 824 264 81 13 chr1 78529747 78529982 -164134371 + MIR SINE MIR 12 262 0 516 309 76 35 chr1 78529978 78530266 -164134087 + L2 LINE L2 2381 2680 -634 * 982 211 23 18 chr1 78530276 78530494 -164133859 - MER20 DNA MER1_type 0 219 1 2083 120 0 0 chr1 78530659 78530943 -164133410 + AluSc SINE Alu 1 284 -25 917 233 220 40 chr1 78531073 78531521 -164132832 - L2 LINE L2 -5 3308 2772 226 268 218 58 chr1 78531802 78532164 -164132189 + L2 LINE L2 2317 2736 -578 683 291 33 0 chr1 78532220 78532430 -164131923 + MIR SINE MIR 36 252 -10 571 218 206 66 chr1 78532543 78532786 -164131567 + MER5C DNA MER1_type 47 323 -1 2047 163 10 0 chr1 78533076 78533383 -164130970 + AluJo SINE Alu 1 310 -2 600 211 32 97 chr1 78533700 78533885 -164130468 + MIR SINE MIR 55 227 -35 358 262 9 59 chr1 78534215 78534366 -164129987 - MIR SINE MIR -49 159 20 316 285 146 19 chr1 78535093 78535251 -164129102 + MER5B DNA MER1_type 1 178 0 245 289 62 0 chr1 78536252 78536349 -164128004 - MIR SINE MIR -83 179 77 422 246 75 88 chr1 78537094 78537322 -164127031 + MIR SINE MIR 35 259 -3 456 255 191 0 chr1 78538087 78538228 -164126125 - MIR3 SINE MIR -5 203 36 466 237 86 0 chr1 78538284 78538423 -164125930 + MER3 DNA MER1_type 6 156 -53 243 260 31 42 chr1 78538610 78538706 -164125647 + MIR3 SINE MIR 108 202 -6 231 347 81 0 chr1 78538684 78538808 -164125545 + MIR SINE MIR 30 163 -99 * 927 161 92 6 chr1 78540023 78540197 -164124156 - MER5A DNA MER1_type 0 189 1 267 258 129 52 chr1 78540238 78540393 -164123960 - MIR SINE MIR -57 205 39 9462 213 33 20 chr1 78540572 78544578 -164119775 - L1MC1 LINE L1 -2 6611 2556 1257 169 16 75 chr1 78544578 78544832 -164119521 + MER8 DNA MER2_type 1 239 0 7591 179 111 7 chr1 78544836 78546642 -164117711 - L1MC1 LINE L1 -4401 2025 32 225 0 0 0 chr1 78547263 78547288 -164117065 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 438 287 132 18 chr1 78547423 78547590 -164116763 + MIR SINE MIR 66 251 -11 843 164 0 15 chr1 78547796 78547930 -164116423 - FLAM_C SINE Alu -1 132 1 545 179 39 64 chr1 78547956 78548112 -164116241 - MER106B DNA MER1_type -904 155 4 207 179 45 15 chr1 78549182 78549249 -164115104 + CT-rich Low_complexity Low_complexity 3 71 0 405 321 83 6 chr1 78549264 78549432 -164114921 - MIR SINE MIR -4 258 78 398 268 27 0 chr1 78549703 78549815 -164114538 + MIR SINE MIR 8 122 -140 333 324 0 10 chr1 78549822 78549924 -164114429 - L2 LINE L2 -4 3309 3209 4407 192 134 20 chr1 78550266 78551560 -164112793 + Charlie1a DNA MER1_type 8 1449 -6 2429 140 85 30 chr1 78551929 78552172 -164112181 - Tigger2 DNA MER2_type -1 2717 2489 2090 98 11 3 chr1 78552172 78552486 -164111867 - AluSc SINE Alu 0 316 1 2429 140 85 30 chr1 78552486 78552714 -164111639 - Tigger2 DNA MER2_type -229 2489 2217 1806 146 33 24 chr1 78552714 78553050 -164111303 - MER1B DNA MER1_type 0 339 1 2298 148 55 2 chr1 78554012 78554411 -164109942 + MSTB1 LTR MaLR 6 425 -7 233 333 83 9 chr1 78554447 78554555 -164109798 + MIR SINE MIR 86 201 -61 222 324 68 0 chr1 78554568 78554642 -164109711 - L2 LINE L2 -12 3260 3182 189 315 124 0 chr1 78555661 78555750 -164108603 - L2 LINE L2 0 3313 3214 318 350 51 0 chr1 78556024 78556161 -164108192 + MIR SINE MIR 4 147 -115 222 136 0 0 chr1 78556268 78556312 -164108041 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 1121 281 151 46 chr1 78558836 78559816 -164104537 - L2 LINE L2 0 3313 2224 2247 110 0 19 chr1 78560247 78560557 -164103796 + AluSg SINE Alu 1 304 -6 1276 211 14 42 chr1 78562519 78562838 -164101515 + AluJo SINE Alu 1 311 0 613 189 9 0 chr1 78563192 78563298 -164101055 + MER81 DNA DNA 1 107 -7 189 200 67 0 chr1 78563369 78563414 -164100939 + MIR SINE MIR 128 175 -87 315 338 69 69 chr1 78563772 78564089 -164100264 + L2 LINE L2 2866 3182 -90 750 124 0 0 chr1 78564089 78564210 -164100143 + (CA)n Simple_repeat Simple_repeat 2 122 0 1776 128 3 53 chr1 78564229 78564511 -164099842 - AluSx SINE Alu -44 268 1 208 278 0 0 chr1 78564526 78564580 -164099773 + L2 LINE L2 3229 3282 -31 27 81 0 0 chr1 78565790 78565852 -164098501 + AT_rich Low_complexity Low_complexity 1 62 0 8140 22 16 4 chr1 78566673 78567677 -164096676 - L1PA3 LINE L1 0 6155 5149 256 278 67 61 chr1 78567774 78567954 -164096399 + L1MC/D LINE L1 5620 5803 -361 440 315 123 5 chr1 78568005 78568224 -164096129 - MIR SINE MIR 0 262 18 446 197 220 8 chr1 78569089 78569221 -164095132 + MER3 DNA MER1_type 45 204 -5 405 301 279 3 chr1 78569227 78569589 -164094764 + L2 LINE L2 2272 2733 -581 326 321 31 38 chr1 78569634 78569793 -164094560 + L2 LINE L2 3156 3313 0 319 358 37 9 chr1 78570597 78570706 -164093647 - L2 LINE L2 -20 3252 3141 851 255 48 5 chr1 78570807 78571015 -164093338 + MIR SINE MIR 22 238 -24 411 230 35 0 chr1 78571039 78571126 -164093227 + MER7A DNA MER2_type 1 88 -258 1654 135 64 0 chr1 78571160 78571426 -164092927 + MER7A DNA MER2_type 65 345 -1 262 286 113 68 chr1 78571496 78571629 -164092724 - L2 LINE L2 -209 3063 2925 218 289 26 26 chr1 78571691 78571767 -164092586 - L2 LINE L2 -509 2805 2730 879 269 45 8 chr1 78572381 78572623 -164091730 + MIR SINE MIR 12 262 0 1010 173 203 0 chr1 78572770 78573007 -164091346 + MER33 DNA MER1_type 1 285 -39 51 75 0 0 chr1 78573009 78573116 -164091237 + AT_rich Low_complexity Low_complexity 1 107 0 231 167 0 0 chr1 78573117 78573153 -164091200 + MER33 DNA MER1_type 288 323 -1 1485 220 110 73 chr1 78574293 78574812 -164089541 - MLT1H LTR MaLR 0 549 12 235 244 76 53 chr1 78575600 78575731 -164088622 + MER5A DNA MER1_type 28 161 -28 299 278 123 25 chr1 78575823 78575978 -164088375 + MIR3 SINE MIR 20 170 -38 696 284 144 63 chr1 78578028 78578471 -164085882 - MLT1K LTR MaLR -8 580 102 433 102 34 0 chr1 78578499 78578558 -164085795 + U7 snRNA snRNA 2 62 -1 26 30 0 0 chr1 78578568 78578601 -164085752 + AT_rich Low_complexity Low_complexity 1 33 0 294 188 0 0 chr1 78578901 78578949 -164085404 + Charlie4 DNA MER1_type 6 53 -1908 227 222 0 0 chr1 78579286 78579331 -164085022 - MIR SINE MIR -23 239 195 654 248 95 45 chr1 78579691 78579913 -164084440 + MIR SINE MIR 20 252 -10 258 106 0 0 chr1 78580120 78580167 -164084186 + (TC)n Simple_repeat Simple_repeat 1 47 0 530 266 47 24 chr1 78582428 78582597 -164081756 + MIR SINE MIR 88 260 -2 573 288 140 0 chr1 78582806 78583035 -164081318 + MIR SINE MIR 2 262 0 614 221 8 8 chr1 78583077 78583199 -164081154 + FLAM_A SINE Alu 2 123 -10 708 169 99 0 chr1 78583832 78583974 -164080379 - LTR32 LTR ERVL 0 471 316 677 227 19 0 chr1 78583983 78584137 -164080216 + MER69A DNA AcHobo 21 177 0 438 20 0 0 chr1 78585002 78585053 -164079300 + (TG)n Simple_repeat Simple_repeat 1 51 0 210 143 0 0 chr1 78586439 78586474 -164077879 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr1 78587335 78587360 -164076993 + AT_rich Low_complexity Low_complexity 1 25 0 935 99 14 49 chr1 78587477 78587619 -164076734 + FRAM SINE Alu 23 159 -17 1742 207 183 12 chr1 78587630 78588031 -164076322 + L1MC4 LINE L1 7448 7955 -87 270 0 0 0 chr1 78588031 78588061 -164076292 + (TC)n Simple_repeat Simple_repeat 1 30 0 1742 207 183 12 chr1 78588061 78588166 -164076187 + L1MC4 LINE L1 7955 8041 -1 204 229 21 0 chr1 78588561 78588609 -164075744 + (TATG)n Simple_repeat Simple_repeat 3 51 0 242 371 0 0 chr1 78588681 78588751 -164075602 + L3 LINE CR1 1496 1565 -12 199 214 202 34 chr1 78589853 78589942 -164074411 + MIR SINE MIR 159 262 0 201 289 82 52 chr1 78590032 78590129 -164074224 - MIR3 SINE MIR 0 208 109 259 327 0 62 chr1 78590174 78590287 -164074066 + MIR SINE MIR 130 235 -27 431 314 59 7 chr1 78590288 78590441 -164073912 + L2 LINE L2 3111 3271 -1 242 258 106 0 chr1 78590523 78590589 -164073764 + MIR SINE MIR 63 135 -73 28 0 0 0 chr1 78590741 78590769 -164073584 + AT_rich Low_complexity Low_complexity 1 28 0 814 285 4 58 chr1 78591475 78591752 -164072601 - MIR SINE MIR 0 262 1 2294 128 42 0 chr1 78591975 78592333 -164072020 - L1MA4 LINE L1 -5 6295 5923 2142 128 0 7 chr1 78592878 78593182 -164071171 + AluSq SINE Alu 1 302 -11 1881 142 67 29 chr1 78593793 78594139 -164070214 + MER46B DNA MER2_type 2 235 -1 234 310 71 26 chr1 78594340 78594453 -164069900 - MIR3 SINE MIR -39 169 52 332 297 68 17 chr1 78594749 78594867 -164069486 + L2 LINE L2 2608 2731 -583 201 337 35 35 chr1 78595396 78595482 -164068871 - L2 LINE L2 -2 3270 3185 1115 248 146 9 chr1 78595819 78596258 -164068095 - MLT1L LTR MaLR -17 598 100 511 310 86 40 chr1 78596492 78596866 -164067487 - L2 LINE L2 -571 2743 2353 1261 135 99 36 chr1 78597729 78597951 -164066402 - MER46A DNA MER2_type 0 236 1 364 335 70 43 chr1 78597978 78598208 -164066145 - L2 LINE L2 -4 3268 3033 272 283 0 43 chr1 78598493 78598585 -164065768 + MER117 DNA MER1_type 61 148 -49 229 304 51 0 chr1 78598582 78598661 -164065692 + MER117 DNA MER1_type 114 196 -1 * 327 130 0 0 chr1 78599923 78599977 -164064376 + (TG)n Simple_repeat Simple_repeat 2 55 0 233 191 0 0 chr1 78600008 78600050 -164064303 + (TGGG)n Simple_repeat Simple_repeat 3 44 0 263 299 66 58 chr1 78600593 78600730 -164063623 - L2 LINE L2 -10 3262 3125 438 208 57 196 chr1 78601699 78601964 -164062389 - MIR SINE MIR 0 262 35 2239 120 0 0 chr1 78603732 78604033 -164060320 + AluSx SINE Alu 1 301 -11 295 283 217 13 chr1 78605207 78605359 -164058994 - L2 LINE L2 -4 3309 3127 333 294 8 50 chr1 78605530 78605649 -164058704 - MIR SINE MIR -88 174 61 350 253 35 0 chr1 78605733 78605820 -164058533 - MIR SINE MIR -77 131 42 1040 239 30 4 chr1 78606023 78606257 -164058096 - MIR SINE MIR -11 251 12 393 257 149 20 chr1 78606323 78606471 -164057882 + MIR SINE MIR 32 198 -64 794 264 93 0 chr1 78606862 78607078 -164057275 + MIR SINE MIR 18 253 -9 365 227 16 86 chr1 78608128 78608256 -164056097 + MER113 DNA MER1_type? 2 120 -401 22 0 0 0 chr1 78608466 78608488 -164055865 + AT_rich Low_complexity Low_complexity 1 22 0 260 210 222 0 chr1 78608603 78608684 -164055669 + MIR SINE MIR 143 241 -21 22 0 0 0 chr1 78608810 78608832 -164055521 + AT_rich Low_complexity Low_complexity 1 22 0 661 275 143 4 chr1 78609185 78609429 -164054924 - Charlie8 DNA MER1_type -2139 278 1 1670 174 75 8 chr1 78610215 78610542 -164053811 - MLT1A1 LTR MaLR -20 447 1 1306 205 0 0 chr1 78610595 78610819 -164053534 - MER58A DNA MER1_type 0 224 1 324 249 148 28 chr1 78611011 78611228 -164053125 - L1ME4a LINE L1 -238 5883 5641 184 289 48 24 chr1 78611535 78611618 -164052735 + L2 LINE L2 3000 3084 -188 193 214 0 0 chr1 78611701 78611743 -164052610 + L2 LINE L2 3267 3308 -5 183 296 26 52 chr1 78611822 78611937 -164052416 - L2 LINE L2 -870 2444 2333 2115 141 0 7 chr1 78611949 78612255 -164052098 - AluSx SINE Alu -8 304 1 1379 218 20 14 chr1 78612258 78612551 -164051802 - AluJo SINE Alu -17 295 1 355 252 10 0 chr1 78612554 78612657 -164051696 - L2 LINE L2 -968 2346 2243 233 216 20 0 chr1 78612706 78612757 -164051596 + L2 LINE L2 3160 3211 -61 1503 150 63 12 chr1 78612928 78613182 -164051171 + AluJb SINE Alu 1 267 -45 299 346 20 33 chr1 78613576 78613729 -164050624 - MIR3 SINE MIR -48 160 10 24 53 0 0 chr1 78613818 78613856 -164050497 + AT_rich Low_complexity Low_complexity 1 38 0 226 283 51 15 chr1 78614120 78614250 -164050103 + MIR SINE MIR 48 145 -63 525 245 132 22 chr1 78615529 78615747 -164048606 - MIR SINE MIR -11 251 7 338 289 38 13 chr1 78615798 78615957 -164048396 - MER103 DNA DNA -2 164 2 2159 128 3 10 chr1 78615996 78616308 -164048045 + AluSx SINE Alu 1 310 -2 908 153 0 0 chr1 78616376 78616507 -164047846 + FRAM SINE Alu 16 146 -30 571 288 104 14 chr1 78616525 78616737 -164047616 + MIR SINE MIR 2 232 -30 26 64 0 0 chr1 78617537 78617584 -164046769 + AT_rich Low_complexity Low_complexity 1 47 0 281 243 146 0 chr1 78618350 78618453 -164045900 + MIR3 SINE MIR 14 131 -77 210 361 12 0 chr1 78619395 78619478 -164044875 + L2 LINE L2 2701 2784 -530 194 255 143 127 chr1 78619563 78619885 -164044468 + L2 LINE L2 2914 3240 -32 1136 181 177 120 chr1 78620393 78620652 -164043701 - L1ME3A LINE L1 -1 6169 5926 1816 149 0 18 chr1 78620652 78620934 -164043419 - AluSx SINE Alu -35 277 1 1136 181 177 120 chr1 78620934 78621189 -164043164 - L1ME3A LINE L1 -244 5926 5626 230 319 45 38 chr1 78622847 78623004 -164041349 - MER5B DNA MER1_type -3 175 18 510 236 54 96 chr1 78626352 78626462 -164037891 - L1ME3 LINE L1 -160 6024 5922 2153 109 3 0 chr1 78626462 78626746 -164037607 + AluSx SINE Alu 1 285 -27 510 236 54 96 chr1 78626746 78626848 -164037505 - L1ME3 LINE L1 -262 5922 5817 717 274 32 8 chr1 78627343 78627595 -164036758 + MIR SINE MIR 3 260 -2 475 239 77 19 chr1 78628146 78628301 -164036052 - MIR SINE MIR -71 191 28 850 225 16 6 chr1 78629640 78629822 -164034531 - MER5A DNA MER1_type -2 187 4 279 222 0 28 chr1 78630198 78630270 -164034083 + L1MC4a LINE L1 5851 5920 -1888 406 216 43 17 chr1 78630469 78630585 -164033768 + MIR SINE MIR 144 262 0 548 278 94 14 chr1 78631310 78631533 -164032820 + MIR SINE MIR 21 261 -1 785 256 55 24 chr1 78632025 78632279 -164032074 + MIR SINE MIR 1 262 0 646 180 275 0 chr1 78632646 78632846 -164031507 + Charlie5 DNA MER1_type 2364 2618 0 567 226 146 30 chr1 78633124 78633323 -164031030 - MIR SINE MIR -34 228 7 2130 112 10 3 chr1 78633623 78633918 -164030435 - AluSx SINE Alu -15 297 1 256 276 30 0 chr1 78634030 78634105 -164030248 + MER5A DNA MER1_type 24 105 -78 551 243 144 27 chr1 78634524 78634746 -164029607 + MIR SINE MIR 14 261 -1 301 268 53 74 chr1 78635338 78635528 -164028825 - LTR67 LTR ERVL 0 557 372 2006 157 36 41 chr1 78635767 78635935 -164028418 - MLT1B LTR MaLR 0 390 223 2326 84 20 0 chr1 78635935 78636234 -164028119 + AluSq SINE Alu 1 305 -8 2006 157 36 41 chr1 78636234 78636453 -164027900 - MLT1B LTR MaLR -167 223 5 392 260 20 27 chr1 78636650 78636800 -164027553 - MIR SINE MIR -66 196 48 444 202 197 111 chr1 78636914 78637112 -164027241 - Charlie8 DNA MER1_type -2183 234 20 186 250 83 0 chr1 78637361 78637421 -164026932 - MIR SINE MIR -87 175 111 1300 94 0 0 chr1 78638123 78638283 -164026070 + AluSq SINE Alu 1 160 -153 1892 156 3 10 chr1 78638448 78638743 -164025610 - AluJb SINE Alu -19 293 1 783 236 83 60 chr1 78639320 78639920 -164024433 + LTR48 LTR ERV1 1 585 0 204 265 133 51 chr1 78640201 78640299 -164024054 + L2 LINE L2 3162 3267 -5 492 132 0 0 chr1 78640893 78640999 -164023354 + (TA)n Simple_repeat Simple_repeat 1 106 0 301 272 0 22 chr1 78641004 78641096 -164023257 - L1MC4 LINE L1 -1339 6703 6614 192 111 0 0 chr1 78641103 78641139 -164023214 + (TA)n Simple_repeat Simple_repeat 1 36 0 300 255 0 43 chr1 78641142 78641236 -164023117 - L1MC4 LINE L1 -1339 6703 6614 * 320 311 0 0 chr1 78641230 78641320 -164023033 + L1MC4 LINE L1 6614 6703 -1339 309 169 28 56 chr1 78641272 78641343 -164023010 - L1MC4 LINE L1 -1337 6705 6637 * 2467 79 3 16 chr1 78644192 78644509 -164019844 + AluSp SINE Alu 1 313 0 322 238 86 0 chr1 78644946 78645051 -164019302 - L1MC4 LINE L1 0 8042 7929 687 245 107 40 chr1 78645181 78645508 -164018845 - L1MC4 LINE L1 -476 7566 7218 23 0 0 0 chr1 78646812 78646835 -164017518 + AT_rich Low_complexity Low_complexity 1 23 0 505 251 12 41 chr1 78649004 78649175 -164015178 + MIR3 SINE MIR 19 184 -24 203 297 35 126 chr1 78649695 78650005 -164014348 - L2 LINE L2 -1 3271 2990 2700 32 3 7 chr1 78650971 78651279 -164013074 + AluY SINE Alu 1 307 -4 2059 126 3 7 chr1 78651911 78652251 -164012102 - AluSx SINE Alu 0 312 1 263 164 86 69 chr1 78652631 78652747 -164011606 - MER113 DNA MER1_type? -364 157 40 2345 71 7 3 chr1 78652823 78653118 -164011235 + AluY SINE Alu 1 296 -15 494 273 21 43 chr1 78653318 78653505 -164010848 - MIR SINE MIR -36 226 44 2317 112 0 0 chr1 78653758 78654063 -164010290 - AluSx SINE Alu -7 305 1 413 265 0 0 chr1 78654063 78654161 -164010192 - MIR SINE MIR -58 204 107 307 335 60 27 chr1 78654209 78654394 -164009959 + MIR3 SINE MIR 5 195 -13 491 335 12 6 chr1 78655005 78655166 -164009187 - L2 LINE L2 -217 3055 2894 2701 33 0 0 chr1 78655291 78655590 -164008763 - AluY SINE Alu -12 299 1 189 333 12 0 chr1 78655906 78655987 -164008366 + L2 LINE L2 2978 3059 -213 462 18 0 0 chr1 78655990 78656045 -164008308 + (CA)n Simple_repeat Simple_repeat 2 56 0 445 274 102 19 chr1 78656485 78656700 -164007653 - MIR SINE MIR -2 260 28 686 197 0 0 chr1 78656717 78656839 -164007514 - FLAM_C SINE Alu -1 142 21 267 328 9 52 chr1 78657334 78657450 -164006903 + MIR SINE MIR 22 132 -76 2240 103 3 3 chr1 78657529 78657812 -164006541 + AluSg SINE Alu 1 296 -14 211 37 0 0 chr1 78657812 78657839 -164006514 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2240 103 3 3 chr1 78657839 78657855 -164006498 + AluSg SINE Alu 295 310 0 215 323 0 0 chr1 78657940 78658002 -164006351 + L2 LINE L2 3182 3243 -29 285 263 51 58 chr1 78658359 78658496 -164005857 + MER5A DNA MER1_type 48 183 -6 556 288 57 14 chr1 78658650 78658862 -164005491 - Charlie8 DNA MER1_type -2152 265 45 709 263 46 5 chr1 78659090 78659284 -164005069 + MIR SINE MIR 52 253 -9 315 311 195 36 chr1 78659341 78659618 -164004735 + L2 LINE L2 2947 3267 -5 180 0 0 0 chr1 78659965 78659985 -164004368 + (T)n Simple_repeat Simple_repeat 1 20 0 185 154 0 0 chr1 78661012 78661038 -164003315 - L2 LINE L2 -23 3290 3265 386 252 61 30 chr1 78661061 78661192 -164003161 - L2 LINE L2 0 3313 3179 23 33 0 0 chr1 78663499 78663529 -164000824 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr1 78666137 78666157 -163998196 + (CGGGGG)n Simple_repeat Simple_repeat 2 21 0 345 250 102 19 chr1 78667756 78667864 -163996489 + L2 LINE L2 3156 3272 0 26 30 0 0 chr1 78668623 78668656 -163995697 + AT_rich Low_complexity Low_complexity 1 33 0 1096 113 0 0 chr1 78669111 78669252 -163995101 + AluSq/x SINE Alu 1 141 -171 2189 96 3 72 chr1 78669252 78669587 -163994766 + AluSq SINE Alu 1 312 -1 1987 159 0 0 chr1 78669991 78670292 -163994061 - AluJo SINE Alu -11 301 1 1736 241 170 16 chr1 78670360 78670991 -163993362 + L2 LINE L2 2094 2821 -493 468 188 102 0 chr1 78670992 78671120 -163993233 + L1MB7 LINE L1 6044 6184 0 589 261 187 55 chr1 78671120 78671553 -163992800 + L2 LINE L2 2812 3301 -12 1972 61 0 20 chr1 78671559 78671806 -163992547 - AluY SINE Alu -15 296 55 220 259 0 0 chr1 78673313 78673367 -163990986 + MIR SINE MIR 88 141 -121 21 57 0 0 chr1 78673624 78673659 -163990694 + AT_rich Low_complexity Low_complexity 1 35 0 664 120 0 0 chr1 78674559 78674682 -163989671 - AluJb SINE Alu 0 312 190 689 120 7 133 chr1 78674718 78674868 -163989485 + FLAM_A SINE Alu 1 131 -2 497 322 45 37 chr1 78674900 78675145 -163989208 - MIR SINE MIR -13 249 3 243 321 200 0 chr1 78675213 78675353 -163989000 + MIR SINE MIR 90 257 -5 1941 148 0 49 chr1 78675633 78675958 -163988395 - AluSx SINE Alu -3 309 1 351 60 0 0 chr1 78677432 78677482 -163986871 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 968 132 11 0 chr1 78677486 78677660 -163986693 + CT-rich Low_complexity Low_complexity 2 177 0 1416 146 90 45 chr1 78677660 78677928 -163986425 - AluJo SINE Alu -32 280 1 340 257 40 10 chr1 78677929 78678030 -163986323 + L1ME4a LINE L1 6001 6104 -17 489 182 91 0 chr1 78678037 78678147 -163986206 - L1ME2 LINE L1 -1 6163 6044 253 182 0 0 chr1 78678179 78678223 -163986130 - L1ME2 LINE L1 -101 6063 6020 450 300 25 0 chr1 78678482 78678602 -163985751 + L2 LINE L2 3149 3271 -1 419 273 7 72 chr1 78678641 78678780 -163985573 - L2 LINE L2 0 3313 3184 237 306 0 0 chr1 78679579 78679651 -163984702 + MIR SINE MIR 77 148 -114 339 261 0 33 chr1 78680152 78680244 -163984109 - L2 LINE L2 0 3313 3225 216 336 60 17 chr1 78680897 78681013 -163983340 - MIR SINE MIR -50 212 92 329 342 83 22 chr1 78682008 78682321 -163982032 + L2 LINE L2 2519 2850 -464 433 299 71 0 chr1 78682391 78682518 -163981835 + MER45A DNA AcHobo 6 141 -37 752 183 0 0 chr1 78682522 78682637 -163981716 + FLAM_C SINE Alu 2 116 -27 2274 88 7 3 chr1 78682823 78683119 -163981234 - AluY SINE Alu -13 298 2 269 209 0 45 chr1 78683246 78683313 -163981040 + MIR SINE MIR 154 217 -45 516 360 91 39 chr1 78683385 78683768 -163980585 - L2 LINE L2 -3 3269 2867 533 307 67 0 chr1 78683807 78683986 -163980367 + MER117 DNA MER1_type 2 192 -5 353 320 0 0 chr1 78683993 78684093 -163980260 - L2 LINE L2 -500 2814 2715 206 152 0 0 chr1 78684098 78684131 -163980222 + L2 LINE L2 3273 3305 -8 26 30 0 0 chr1 78684522 78684555 -163979798 + AT_rich Low_complexity Low_complexity 1 33 0 7101 38 1 0 chr1 78684737 78685928 -163978425 + L1PA5 LINE L1 4915 6141 -13 260 59 0 0 chr1 78685898 78685932 -163978421 + L1PA3 LINE L1 6113 6146 -9 * 2357 88 0 16 chr1 78686269 78686574 -163977779 - AluSx SINE Alu -12 300 1 23 54 0 0 chr1 78686610 78686647 -163977706 + AT_rich Low_complexity Low_complexity 1 37 0 282 301 0 0 chr1 78686963 78687036 -163977317 + L2 LINE L2 3200 3272 0 208 159 0 23 chr1 78687464 78687508 -163976845 + T-rich Low_complexity Low_complexity 2 44 0 337 311 57 8 chr1 78687514 78687636 -163976717 - MIR SINE MIR -28 234 107 201 244 0 0 chr1 78688005 78688046 -163976307 + (ATG)n Simple_repeat Simple_repeat 2 42 0 576 314 88 0 chr1 78688051 78688277 -163976076 - MIR SINE MIR -12 250 5 240 59 0 0 chr1 78688383 78688417 -163975936 + (TG)n Simple_repeat Simple_repeat 2 35 0 214 388 59 0 chr1 78688736 78688821 -163975532 - L2 LINE L2 -25 3247 3158 354 331 24 8 chr1 78689154 78689281 -163975072 + MIR SINE MIR 25 153 -109 726 306 190 25 chr1 78689304 78689709 -163974644 - L2 LINE L2 0 3313 2842 724 272 56 28 chr1 78689709 78689996 -163974357 + L1ME3A LINE L1 5582 5876 -294 2362 82 10 10 chr1 78690998 78691301 -163973052 - AluSx SINE Alu -9 303 1 2203 282 85 25 chr1 78692089 78692494 -163971859 + L1MEc LINE L1 1 380 -6016 1047 53 61 0 chr1 78692494 78692625 -163971728 + MER85 DNA T2_type 1 139 0 2203 282 85 25 chr1 78692625 78693239 -163971114 + L1MEc LINE L1 380 1082 -5314 436 258 76 58 chr1 78693236 78693462 -163970891 - L1ME LINE L1 -3884 3075 2847 * 1598 110 18 9 chr1 78693467 78693695 -163970658 - L1PA10 LINE L1 -1 6167 5938 1866 70 4 0 chr1 78693695 78693936 -163970417 + L1PA10 LINE L1 5706 5947 -221 1695 228 0 6 chr1 78694028 78694340 -163970013 + 7SLRNA srpRNA srpRNA 2 311 -9 2474 67 3 6 chr1 78694344 78694656 -163969697 + AluY SINE Alu 1 311 0 307 271 0 0 chr1 78694823 78694893 -163969460 - MLT1J LTR MaLR -338 173 104 304 70 23 0 chr1 78694993 78695036 -163969317 - Alu SINE Alu -258 44 1 259 235 200 17 chr1 78695066 78695181 -163969172 - L1ME LINE L1 -5586 1361 1226 348 262 59 37 chr1 78695333 78695520 -163968833 - L1ME LINE L1 -6656 203 13 4133 203 65 26 chr1 78695545 78696987 -163967366 + L1ME1 LINE L1 4613 6272 -62 885 154 0 0 chr1 78696987 78697110 -163967243 - FLAM_A SINE Alu -10 123 1 4133 203 65 26 chr1 78697110 78697176 -163967177 + L1ME1 LINE L1 6272 6334 0 208 326 76 35 chr1 78697384 78697528 -163966825 - L2 LINE L2 -1558 1756 1607 578 288 117 25 chr1 78697544 78697870 -163966483 - L2 LINE L2 -1669 1645 1290 246 304 73 4 chr1 78698610 78698729 -163965624 + MIR SINE MIR 1 135 -73 22 0 0 0 chr1 78698729 78698751 -163965602 + AT_rich Low_complexity Low_complexity 1 22 0 860 146 0 39 chr1 78698753 78698883 -163965470 - FLAM_C SINE Alu -8 125 1 213 329 13 0 chr1 78698913 78698992 -163965361 + MIR SINE MIR 169 248 -14 779 235 6 12 chr1 78699093 78699259 -163965094 - MIR SINE MIR -57 205 41 321 362 24 0 chr1 78699842 78699969 -163964384 - MIR3 SINE MIR -46 162 33 209 350 0 25 chr1 78700026 78700106 -163964247 - L2 LINE L2 -4 3268 3191 2123 129 0 13 chr1 78700113 78700415 -163963938 - AluSx SINE Alu -14 298 1 1002 136 6 34 chr1 78700418 78700595 -163963758 - FRAM SINE Alu 0 176 5 797 259 46 12 chr1 78700964 78701223 -163963130 + LTR16B LTR ERVL 44 311 -153 583 157 130 9 chr1 78701226 78701334 -163963019 - AluJb SINE Alu -140 172 52 26 0 0 0 chr1 78701614 78701640 -163962713 + AT_rich Low_complexity Low_complexity 1 26 0 498 246 89 39 chr1 78701687 78702053 -163962300 - MLT1J2 LTR MaLR -14 436 1 308 246 131 31 chr1 78702319 78702449 -163961904 + L2 LINE L2 3126 3268 -4 242 83 0 0 chr1 78702548 78702584 -163961769 - L1MB4 LINE L1 -12 6168 6133 1113 125 26 57 chr1 78702584 78702776 -163961577 - AluJ SINE Alu -14 298 113 2582 152 27 5 chr1 78702778 78703226 -163961127 - L1MB3 LINE L1 -77 6106 5649 236 254 17 17 chr1 78703229 78703288 -163961065 + MER5B DNA MER1_type 119 177 -1 860 10 0 0 chr1 78705152 78705248 -163959105 - L1PA2 LINE L1 0 6155 6060 491 301 137 48 chr1 78706277 78706649 -163957704 - MLT1L LTR MaLR -210 405 1 555 224 0 9 chr1 78707103 78707219 -163957134 + MER3 DNA MER1_type 39 153 -56 1693 216 3 8 chr1 78707228 78707613 -163956740 + MER3 DNA MER1_type 2242 2624 0 184 189 81 0 chr1 78707618 78707655 -163956698 + L2 LINE L2 3230 3269 -3 286 286 32 0 chr1 78708462 78708525 -163955828 - L2 LINE L2 -3 3269 3205 680 258 132 11 chr1 78708770 78709142 -163955211 + L1ME4a LINE L1 5636 6052 -69 812 158 0 22 chr1 78709205 78709224 -163955129 - AluJ SINE Alu -176 136 118 300 53 0 0 chr1 78709224 78709262 -163955091 + (TTA)n Simple_repeat Simple_repeat 2 39 0 812 158 0 22 chr1 78709262 78709381 -163954972 - AluJ SINE Alu -194 118 1 25 0 0 0 chr1 78709433 78709458 -163954895 + AT_rich Low_complexity Low_complexity 1 25 0 2212 108 0 10 chr1 78709805 78710100 -163954253 + AluSq SINE Alu 1 292 -21 2728 150 113 4 chr1 78710116 78710629 -163953724 - L1MB3 LINE L1 -3 6180 5612 327 135 0 0 chr1 78710629 78710681 -163953672 + MADE1 DNA Mariner 1 52 -28 330 148 0 0 chr1 78710682 78710736 -163953617 - L1MB3 LINE L1 -584 5599 5546 382 250 10 10 chr1 78711046 78711142 -163953211 + MIR SINE MIR 17 112 -150 731 266 98 62 chr1 78711142 78711722 -163952631 - MLT1H1 LTR MaLR 0 555 10 391 214 0 20 chr1 78711726 78711824 -163952529 + MIR SINE MIR 110 205 -57 225 259 28 84 chr1 78712978 78713121 -163951232 - L1ME LINE L1 -491 5679 5545 252 176 111 28 chr1 78713204 78713312 -163951041 - L1P LINE L1 -724 5407 5291 983 170 46 203 chr1 78713348 78713589 -163950764 - MLT1A2 LTR MaLR 0 374 189 927 124 0 0 chr1 78713628 78713749 -163950604 + FLAM_C SINE Alu 5 125 -18 765 167 68 19 chr1 78713755 78713917 -163950436 - MLT1A2 LTR MaLR -220 170 1 246 109 0 65 chr1 78713941 78713987 -163950366 + L1MC4 LINE L1 6661 6703 -1339 397 259 130 57 chr1 78714284 78714600 -163949753 - L1M4 LINE L1 -2718 3428 3090 323 333 77 18 chr1 78714602 78714938 -163949415 - L1M4 LINE L1 -3097 3049 2694 456 72 0 0 chr1 78715740 78715809 -163948544 + (TG)n Simple_repeat Simple_repeat 1 69 0 309 218 0 11 chr1 78716211 78716298 -163948055 - MIR SINE MIR -14 248 163 279 140 0 0 chr1 78716396 78716446 -163947907 + (CA)n Simple_repeat Simple_repeat 2 51 0 331 231 66 0 chr1 78717020 78717111 -163947242 - MIR SINE MIR -114 148 52 1854 147 25 3 chr1 78717125 78717411 -163946942 - AluJo SINE Alu -20 292 1 345 342 36 15 chr1 78718828 78719024 -163945329 + MIR SINE MIR 36 235 -27 227 203 16 0 chr1 78719754 78719818 -163944535 + CT-rich Low_complexity Low_complexity 4 68 0 1205 55 11 17 chr1 78719829 78720010 -163944343 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 779 217 22 50 chr1 78720035 78720215 -163944138 - AluJo SINE Alu -18 294 120 214 191 24 0 chr1 78720233 78720275 -163944078 + CT-rich Low_complexity Low_complexity 5 47 0 263 328 149 8 chr1 78720275 78720409 -163943944 - L2 LINE L2 -1 3271 3119 357 277 42 42 chr1 78720525 78720644 -163943709 + L2 LINE L2 3154 3272 0 180 297 66 33 chr1 78721840 78721931 -163942422 - MIR3 SINE MIR -50 158 65 192 191 71 0 chr1 78721964 78722006 -163942347 + MIR SINE MIR 217 261 -1 242 253 15 0 chr1 78722087 78722169 -163942184 - MIR SINE MIR -107 101 34 264 328 27 48 chr1 78722849 78723035 -163941318 - LTR16C LTR ERVL -12 479 298 327 341 136 11 chr1 78723411 78723684 -163940669 - L2 LINE L2 -994 2320 2014 558 238 16 0 chr1 78724349 78724475 -163939878 - L2 LINE L2 0 3313 3186 425 314 121 24 chr1 78724475 78724765 -163939588 - MLT1I LTR MaLR 0 409 92 871 284 82 27 chr1 78724839 78725471 -163938882 - L2 LINE L2 -124 3189 2524 465 278 73 31 chr1 78726093 78726284 -163938069 + MIR SINE MIR 21 219 -43 432 314 69 51 chr1 78726389 78726785 -163937568 + MLT1J LTR MaLR 112 596 -19 447 273 83 23 chr1 78727097 78727313 -163937040 + Charlie2 DNA MER1_type 78 306 -2476 1626 159 4 4 chr1 78727318 78727570 -163936783 + AluJb SINE Alu 1 252 -60 1007 41 0 0 chr1 78727595 78727716 -163936637 - L1PA3 LINE L1 -1 6154 6034 2734 190 122 52 chr1 78727727 78728468 -163935885 + Charlie2 DNA MER1_type 1873 2692 -170 2081 135 26 7 chr1 78728468 78728772 -163935581 - AluSx SINE Alu -2 310 1 2734 190 122 52 chr1 78728772 78728950 -163935403 + Charlie2 DNA MER1_type 2692 2856 -6 2496 97 11 16 chr1 78729223 78729593 -163934760 + L1PA16 LINE L1 5798 6165 -1 2039 139 0 13 chr1 78730169 78730470 -163933883 + AluSx SINE Alu 1 297 -15 2324 113 3 0 chr1 78730836 78731147 -163933206 - AluSx SINE Alu 0 312 1 224 200 83 0 chr1 78731256 78731316 -163933037 - MER91A DNA MER1_type -130 66 2 274 292 127 105 chr1 78731570 78731837 -163932516 + L2 LINE L2 3000 3272 0 307 320 55 37 chr1 78731937 78732243 -163932110 - L2 LINE L2 -242 3030 2715 379 197 13 0 chr1 78732918 78732994 -163931359 - L2 LINE L2 -11 3261 3185 326 355 40 8 chr1 78733153 78733277 -163931076 - L2 LINE L2 -11 3261 3134 1447 140 92 37 chr1 78733289 78733560 -163930793 + AluJb SINE Alu 20 305 -7 2147 117 0 17 chr1 78734067 78734357 -163929996 + AluSx SINE Alu 1 285 -27 333 118 0 0 chr1 78734357 78734408 -163929945 + (TAAG)n Simple_repeat Simple_repeat 2 52 0 346 193 11 11 chr1 78734752 78734840 -163929513 + GA-rich Low_complexity Low_complexity 1 88 0 1749 155 3 28 chr1 78734855 78735171 -163929182 + AluJb SINE Alu 1 309 0 1725 176 3 19 chr1 78735546 78735859 -163928494 + AluJb SINE Alu 1 308 -4 1495 247 68 64 chr1 78736284 78736875 -163927478 - MLT1E LTR MaLR 0 593 1 520 273 81 12 chr1 78737105 78737266 -163927087 + MLT1J LTR MaLR 2 173 -338 2212 119 7 7 chr1 78737433 78737743 -163926610 - AluSx SINE Alu -2 310 1 3093 14 8 0 chr1 78738761 78739115 -163925238 + L1PA2 LINE L1 5798 6154 -1 361 84 24 145 chr1 78739649 78739732 -163924621 - MLT1C LTR MaLR 0 467 395 2157 138 80 42 chr1 78739891 78740341 -163924012 - MLT1C LTR MaLR 0 467 1 251 264 208 0 chr1 78741776 78741882 -163922471 + MIR SINE MIR 64 191 -71 260 247 0 56 chr1 78742566 78742655 -163921698 + L2 LINE L2 2975 3058 -255 1399 235 29 6 chr1 78742655 78742970 -163921383 - MER63 DNA MER1_type 0 1061 740 840 201 12 12 chr1 78742971 78743140 -163921213 + FRAM SINE Alu 1 163 -13 617 167 53 0 chr1 78743144 78743258 -163921095 - MER63 DNA MER1_type -316 746 1 549 306 39 20 chr1 78743258 78743513 -163920840 + L2 LINE L2 3051 3310 -3 748 193 35 23 chr1 78743800 78743971 -163920382 + MER5A DNA MER1_type 17 189 0 1157 140 58 0 chr1 78743997 78744204 -163920149 + MER20 DNA MER1_type 1 219 0 246 345 0 25 chr1 78744419 78744538 -163919815 - L2 LINE L2 -197 3075 2960 471 333 78 5 chr1 78744538 78744742 -163919611 - MIR SINE MIR -15 247 29 810 201 11 45 chr1 78744817 78744996 -163919357 + MLT1B LTR MaLR 1 173 -217 1107 188 0 0 chr1 78744996 78745177 -163919176 + AluJo SINE Alu 1 181 -131 1127 207 51 0 chr1 78745224 78745441 -163918912 + MLT1B LTR MaLR 163 390 0 303 93 0 0 chr1 78746451 78746494 -163917859 + (CAGG)n Simple_repeat Simple_repeat 4 46 0 308 305 22 29 chr1 78746809 78746945 -163917408 + MIR SINE MIR 42 175 -87 218 327 28 19 chr1 78747069 78747176 -163917177 - L2 LINE L2 -5 3267 3160 5783 159 31 8 chr1 78747291 78748700 -163915653 - L1PB3 LINE L1 -2 6152 4683 230 0 33 0 chr1 78748700 78748730 -163915623 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5783 159 31 8 chr1 78748730 78749303 -163915050 - L1PB3 LINE L1 -1471 4683 4125 24 32 0 0 chr1 78749311 78749342 -163915011 + AT_rich Low_complexity Low_complexity 1 31 0 203 221 12 58 chr1 78749677 78749763 -163914590 + L2 LINE L2 3137 3218 -54 332 271 101 30 chr1 78749814 78749932 -163914421 - MIR SINE MIR -37 225 86 207 0 0 0 chr1 78749932 78749955 -163914398 + (ACTTG)n Simple_repeat Simple_repeat 5 27 0 332 271 101 30 chr1 78749955 78750035 -163914318 - MIR SINE MIR -176 86 13 190 325 38 0 chr1 78750208 78750288 -163914065 + MIR SINE MIR 65 147 -115 3994 130 43 56 chr1 78750307 78750510 -163913843 + L1MB3 LINE L1 5423 5627 -556 2244 116 0 0 chr1 78750510 78750813 -163913540 + AluSx SINE Alu 9 311 -1 3994 130 43 56 chr1 78750813 78751328 -163913025 + L1MB3 LINE L1 5627 6133 -50 1640 153 102 0 chr1 78751328 78751603 -163912750 + AluSx SINE Alu 1 303 -9 3994 130 43 56 chr1 78751603 78751653 -163912700 + L1MB3 LINE L1 6133 6182 -1 445 315 136 0 chr1 78752240 78752424 -163911929 - MIR SINE MIR -52 210 2 181 304 22 0 chr1 78752570 78752616 -163911737 - L2 LINE L2 -93 3179 3133 194 316 113 12 chr1 78752624 78752792 -163911561 - MIR SINE MIR 0 262 78 616 221 152 35 chr1 78752795 78753085 -163911268 + MER5C DNA MER1_type 1 324 0 231 235 86 25 chr1 78753150 78753231 -163911122 - MLT1J LTR MaLR -202 309 224 377 286 91 43 chr1 78753250 78753460 -163910893 + L2 LINE L2 2877 3096 -217 1850 135 3 28 chr1 78753465 78753769 -163910584 + MER33 DNA MER1_type 7 304 -2281 6529 138 68 28 chr1 78753769 78754262 -163910091 + Tigger3b DNA MER2_type 1 473 -2555 1953 130 19 19 chr1 78754262 78754569 -163909784 + AluSq SINE Alu 1 307 -6 6529 138 68 28 chr1 78754569 78755258 -163909095 + Tigger3b DNA MER2_type 473 1231 0 1850 135 3 28 chr1 78755258 78755278 -163909075 + MER33 DNA MER1_type 304 323 -1 579 255 25 40 chr1 78755297 78755497 -163908856 + L2 LINE L2 3117 3313 0 2411 110 34 6 chr1 78756569 78756923 -163907430 + THE1B LTR MaLR 1 364 0 209 278 56 14 chr1 78757671 78757743 -163906610 - L2 LINE L2 -9 3263 3189 692 282 0 0 chr1 78758023 78758197 -163906156 - MIR SINE MIR -87 175 2 214 351 30 8 chr1 78758260 78758394 -163905959 - L2 LINE L2 -466 2848 2712 1310 308 172 18 chr1 78758430 78759794 -163904559 + L2 LINE L2 86 1659 -1655 2173 100 3 50 chr1 78760018 78760339 -163904014 - AluSx SINE Alu -6 306 1 424 254 91 18 chr1 78760427 78760592 -163903761 + MIR SINE MIR 37 213 -49 272 354 108 0 chr1 78761519 78761649 -163902704 - L2 LINE L2 -3 3269 3126 862 267 43 20 chr1 78761840 78762143 -163902210 + HAL1 LINE L1 1714 2023 -484 1432 177 102 0 chr1 78762146 78762412 -163901941 - AluJo SINE Alu -7 305 13 684 246 47 89 chr1 78762506 78762867 -163901486 + HAL1 LINE L1 2154 2499 -8 239 187 133 13 chr1 78763085 78763160 -163901193 + MIR SINE MIR 139 222 -40 183 226 36 107 chr1 78763576 78763660 -163900693 - L2 LINE L2 -254 3018 2941 1547 201 0 17 chr1 78763725 78764019 -163900334 + AluJo SINE Alu 1 289 -23 532 359 85 23 chr1 78764038 78764614 -163899739 - L2 LINE L2 -439 2875 2264 521 319 80 48 chr1 78764909 78765561 -163898792 - L2 LINE L2 -2 3311 2638 220 203 14 27 chr1 78766698 78766772 -163897581 + (TTTAA)n Simple_repeat Simple_repeat 4 76 0 353 151 0 0 chr1 78766799 78766852 -163897501 - MER3 DNA MER1_type -156 53 1 448 283 44 22 chr1 78767113 78767293 -163897060 - MIR SINE MIR 0 262 79 256 250 23 11 chr1 78768730 78768818 -163895535 + L2 LINE L2 3225 3313 0 529 201 29 171 chr1 78768940 78769046 -163895307 + MIR SINE MIR 45 100 -162 2166 97 3 33 chr1 78769046 78769345 -163895008 + AluSg SINE Alu 1 290 -20 529 201 29 171 chr1 78769345 78769477 -163894876 + MIR SINE MIR 100 249 -13 207 0 0 0 chr1 78769484 78769507 -163894846 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 902 246 119 33 chr1 78769566 78769961 -163894392 + L2 LINE L2 2872 3300 -13 189 74 0 0 chr1 78769961 78769988 -163894365 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1780 133 74 87 chr1 78770844 78771234 -163893119 + MLT1B LTR MaLR 6 390 0 195 100 0 0 chr1 78771384 78771414 -163892939 + (GA)n Simple_repeat Simple_repeat 1 30 0 339 329 154 0 chr1 78771475 78771618 -163892735 - L2 LINE L2 -8 3264 3100 421 261 39 103 chr1 78771840 78772074 -163892279 + L1MC4a LINE L1 5697 5915 -1893 309 317 17 17 chr1 78772571 78772691 -163891662 + MIR SINE MIR 14 133 -129 345 24 0 0 chr1 78773016 78773058 -163891295 + (CA)n Simple_repeat Simple_repeat 2 43 0 539 261 0 14 chr1 78773686 78773828 -163890525 + LTR67 LTR ERVL 418 557 0 456 321 36 5 chr1 78773840 78774033 -163890320 - MIR SINE MIR -15 247 49 333 215 91 33 chr1 78774101 78774222 -163890131 - MIR SINE MIR -44 218 91 227 288 30 0 chr1 78774239 78774305 -163890048 + L1P5 LINE L1 5600 5667 -484 874 233 30 0 chr1 78774452 78774654 -163889699 + L1ME1 LINE L1 5953 6160 -6 1602 172 45 21 chr1 78774654 78774944 -163889409 - AluJo SINE Alu -15 297 1 457 269 13 32 chr1 78774944 78774962 -163889391 + L1MA10 LINE L1 6317 6334 0 275 220 22 55 chr1 78775078 78775169 -163889184 + L1ME4a LINE L1 5978 6065 -56 578 293 22 11 chr1 78776199 78776380 -163887973 + MIR SINE MIR 16 198 -64 314 326 57 7 chr1 78776749 78776890 -163887463 - L2 LINE L2 -13 3259 3112 2342 96 3 0 chr1 78777087 78777380 -163886973 + AluSg SINE Alu 1 294 -16 195 339 58 26 chr1 78777427 78777616 -163886737 - L2 LINE L2 -541 2773 2579 211 243 14 29 chr1 78779181 78779251 -163885102 + MIR SINE MIR 6 74 -188 209 282 65 40 chr1 78779580 78779744 -163884609 - MIR3 SINE MIR -66 142 7 442 282 79 52 chr1 78779778 78780083 -163884270 + L2 LINE L2 2929 3241 -31 392 294 126 1 chr1 78780140 78780324 -163884029 - MIR SINE MIR -18 244 40 542 296 41 9 chr1 78781018 78781246 -163883107 + MIR SINE MIR 28 261 -1 2055 114 40 0 chr1 78781984 78782281 -163882072 + AluSx SINE Alu 2 310 -2 374 150 0 0 chr1 78782377 78782437 -163881916 - AluSx SINE Alu -3 299 240 2434 97 0 0 chr1 78783048 78783357 -163880996 - AluSx SINE Alu -3 309 1 912 309 112 2 chr1 78783556 78784078 -163880275 + L2 LINE L2 2713 3289 -24 1673 157 4 4 chr1 78784101 78784356 -163879997 - AluSx SINE Alu -57 255 1 208 188 146 0 chr1 78784771 78784819 -163879534 + MIR SINE MIR 200 254 -8 411 304 24 106 chr1 78785683 78786061 -163878292 - L2 LINE L2 -9 3263 2917 485 203 0 42 chr1 78786099 78786217 -163878136 - MER5B DNA MER1_type -65 113 1 * 804 309 91 63 chr1 78786217 78786935 -163877418 - L2 LINE L2 -433 2881 2144 340 284 39 24 chr1 78787508 78787635 -163876718 - MIR SINE MIR -50 212 84 2204 97 38 0 chr1 78787780 78788068 -163876285 + AluSg SINE Alu 1 299 -11 786 194 0 15 chr1 78788221 78788355 -163875998 + FLAM_C SINE Alu 1 132 -1 291 348 38 13 chr1 78788411 78788569 -163875784 - MIR3 SINE MIR -7 201 40 342 278 64 46 chr1 78788965 78789138 -163875215 - MIR SINE MIR -50 212 37 264 250 136 11 chr1 78789149 78789237 -163875116 - MIR SINE MIR -161 101 3 1996 113 33 0 chr1 78790301 78790595 -163873758 - AluSx SINE Alu 0 303 1 420 228 118 16 chr1 78792319 78792446 -163871907 + Tigger8 DNA MER2_type 408 547 -119 1818 131 42 11 chr1 78792712 78792995 -163871358 - AluJo SINE Alu -20 292 1 187 213 43 0 chr1 78793076 78793123 -163871230 + L3b LINE CR1 1533 1581 -2 2216 246 35 53 chr1 78793694 78793949 -163870404 - L1MDa LINE L1 -3147 3393 3135 2058 64 8 0 chr1 78793949 78794200 -163870153 + AluY SINE Alu 57 309 -2 2216 246 35 53 chr1 78794200 78794721 -163869632 - L1MDa LINE L1 -3405 3135 2631 344 171 4 42 chr1 78794733 78794754 -163869599 - AluJo SINE Alu -149 153 133 191 36 36 0 chr1 78794754 78794782 -163869571 + (TTG)n Simple_repeat Simple_repeat 2 30 0 344 171 4 42 chr1 78794782 78794832 -163869521 - AluJo SINE Alu -169 133 87 1570 174 30 30 chr1 78794833 78795194 -163869159 - L1MDa LINE L1 -3903 2637 2277 2232 103 14 0 chr1 78795571 78795863 -163868490 - AluSg1 SINE Alu -13 296 1 358 282 10 19 chr1 78795978 78796081 -163868272 + MIR SINE MIR 38 139 -123 554 110 0 37 chr1 78796245 78796327 -163868026 + AluJb SINE Alu 49 127 -185 23 0 0 0 chr1 78796327 78796350 -163868003 + AT_rich Low_complexity Low_complexity 1 23 0 2457 66 0 25 chr1 78796374 78796693 -163867660 - AluY SINE Alu 0 311 1 325 294 22 13 chr1 78796826 78796968 -163867385 + MIR SINE MIR 3 148 -62 325 277 11 0 chr1 78797425 78797519 -163866834 - MIR SINE MIR -2 260 166 633 281 105 27 chr1 78797526 78797821 -163866532 + L2 LINE L2 2992 3309 -4 216 248 188 0 chr1 78797827 78797928 -163866425 - MIR SINE MIR -91 171 52 206 290 0 0 chr1 78798406 78798468 -163865885 - MIR SINE MIR -66 142 81 1774 99 7 49 chr1 78798978 78799114 -163865239 - Tigger4(Zombi) DNA MER2_type -2 2729 2609 2070 111 7 0 chr1 78799114 78799425 -163864928 - AluSg SINE Alu 0 313 1 1774 99 7 49 chr1 78799425 78799571 -163864782 - Tigger4(Zombi) DNA MER2_type -122 2609 2458 443 208 0 0 chr1 78799645 78799717 -163864636 - Tigger4(Zombi) DNA MER2_type -2659 72 1 239 278 0 0 chr1 78799669 78799723 -163864630 + MER46A DNA MER2_type 97 150 -86 * 2244 121 0 6 chr1 78799738 78800052 -163864301 - AluSx SINE Alu 0 312 1 918 181 68 32 chr1 78800209 78800458 -163863895 + MER46C DNA MER2_type 79 336 -2 2224 124 0 0 chr1 78800790 78801096 -163863257 + AluSx SINE Alu 1 306 -6 497 237 48 88 chr1 78801281 78801481 -163862872 - Charlie2 DNA MER1_type -2542 240 50 1974 141 3 3 chr1 78801481 78801771 -163862582 + AluSx SINE Alu 1 290 -22 497 237 48 88 chr1 78801771 78801819 -163862534 - Charlie2 DNA MER1_type -2732 50 2 2220 106 3 0 chr1 78802026 78802397 -163861956 + AluSp SINE Alu 1 372 0 2693 19 0 0 chr1 78802748 78803055 -163861298 - L1PA3 LINE L1 -251 5904 5598 * 5922 32 0 0 chr1 78803043 78803765 -163860588 - L1P LINE L1 -2771 3375 2654 17067 40 3 4 chr1 78803765 78805838 -163858515 + L1P LINE L1 580 2650 -3496 232 284 30 15 chr1 78805840 78805907 -163858446 - L2 LINE L2 -608 2706 2639 376 69 17 35 chr1 78806027 78806040 -163858313 + AluY SINE Alu 121 133 -168 2145 117 3 26 chr1 78806040 78806349 -163858004 + AluSp SINE Alu 1 302 -11 376 69 17 35 chr1 78806349 78806393 -163857960 + AluY SINE Alu 133 177 -124 372 233 11 0 chr1 78806395 78806485 -163857868 + L1MA10 LINE L1 6235 6325 -9 320 164 15 0 chr1 78806486 78806553 -163857800 + GA-rich Low_complexity Low_complexity 3 70 0 855 284 21 76 chr1 78807012 78807331 -163857022 - L2 LINE L2 -660 2654 2374 1640 135 41 72 chr1 78807331 78807650 -163856703 - AluSx SINE Alu -3 309 1 855 284 21 76 chr1 78807650 78807859 -163856494 - L2 LINE L2 -940 2374 2155 183 204 0 0 chr1 78808621 78808665 -163855688 + (TA)n Simple_repeat Simple_repeat 1 44 0 204 40 0 0 chr1 78808991 78809016 -163855337 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 797 163 0 15 chr1 78809336 78809471 -163854882 - FLAM_C SINE Alu 0 133 1 210 384 0 0 chr1 78809511 78809597 -163854756 - L2 LINE L2 -557 2757 2672 643 235 60 40 chr1 78809647 78809949 -163854404 + L1ME4a LINE L1 5812 6119 -2 2086 109 0 0 chr1 78809953 78810220 -163854133 + AluSx SINE Alu 1 267 -45 27 0 0 0 chr1 78810220 78810247 -163854106 + AT_rich Low_complexity Low_complexity 1 27 0 1990 164 0 0 chr1 78810251 78810543 -163853810 + AluJb SINE Alu 5 296 -16 276 183 0 50 chr1 78811022 78811082 -163853271 - L2 LINE L2 -2 3311 3255 2094 120 0 0 chr1 78811103 78811403 -163852950 + AluSx SINE Alu 1 300 -12 286 260 63 71 chr1 78811491 78811618 -163852735 + L2 LINE L2 3183 3308 -5 543 383 27 36 chr1 78811623 78811952 -163852401 + L2 LINE L2 2935 3260 -12 509 168 229 8 chr1 78811956 78811971 -163852382 - L1MA10 LINE L1 0 6334 6320 1524 214 81 51 chr1 78811971 78812442 -163851911 - L1ME1 LINE L1 -5 6161 5677 822 103 0 0 chr1 78812442 78812549 -163851804 - U6 snRNA snRNA 0 107 1 279 275 303 0 chr1 78812782 78812891 -163851462 - L2 LINE L2 -4 3268 3127 748 167 0 29 chr1 78812915 78813053 -163851300 - MLT1B LTR MaLR 0 390 257 1275 151 155 26 chr1 78813134 78813438 -163850915 - MLT1C LTR MaLR -123 344 2 195 333 0 73 chr1 78813521 78813617 -163850736 - L2 LINE L2 -221 3051 2963 315 248 47 78 chr1 78814187 78814226 -163850127 + MER5B DNA MER1_type 27 66 -112 2026 103 14 0 chr1 78814226 78814516 -163849837 + AluSp SINE Alu 1 294 -19 315 248 47 78 chr1 78814516 78814605 -163849748 + MER5B DNA MER1_type 66 151 -27 282 73 0 0 chr1 78814703 78814744 -163849609 + (TC)n Simple_repeat Simple_repeat 1 41 0 2150 115 0 0 chr1 78814833 78815137 -163849216 - AluSx SINE Alu -8 304 1 289 295 84 24 chr1 78815216 78815382 -163848971 + MER104 DNA Tc2 1 176 -4 210 180 31 6 chr1 78815506 78815558 -163848795 - MIR SINE MIR -119 89 37 256 373 70 43 chr1 78815620 78815805 -163848548 + L2 LINE L2 2440 2629 -685 1852 158 0 10 chr1 78815882 78816192 -163848161 + AluJb SINE Alu 1 307 -5 40 0 0 0 chr1 78816192 78816232 -163848121 + AT_rich Low_complexity Low_complexity 1 40 0 698 251 79 5 chr1 78816242 78816445 -163847908 + MER102b DNA MER1_type 121 338 -3 1548 187 24 0 chr1 78816556 78816845 -163847508 - AluJo SINE Alu -16 296 1 1451 135 0 25 chr1 78817147 78817392 -163846961 - AluJb SINE Alu -6 306 68 229 125 0 0 chr1 78817392 78817424 -163846929 - AluJb SINE Alu -270 32 1 1471 185 0 11 chr1 78817769 78818045 -163846308 - AluJo SINE Alu -8 304 32 320 281 32 91 chr1 78818291 78818512 -163845841 - L2 LINE L2 0 3313 3106 366 320 40 36 chr1 78818540 78818765 -163845588 + MIR SINE MIR 31 256 -6 1820 135 7 14 chr1 78818902 78819224 -163845129 + AluSx SINE Alu 2 321 0 2099 113 7 0 chr1 78819449 78819750 -163844603 + AluSx SINE Alu 2 304 -8 309 277 10 50 chr1 78819877 78819978 -163844375 - L2 LINE L2 -5 3267 3171 1979 120 3 43 chr1 78820289 78820636 -163843717 + AluSx SINE Alu 1 312 0 254 252 28 84 chr1 78820866 78820973 -163843380 + MIR SINE MIR 162 262 0 236 261 116 0 chr1 78820969 78821038 -163843315 - MIR SINE MIR -105 157 81 * 312 170 19 0 chr1 78821804 78821857 -163842496 + MIR SINE MIR 90 143 -119 1619 151 0 0 chr1 78821864 78822122 -163842231 + AluSx SINE Alu 1 258 -54 23 0 0 0 chr1 78822126 78822149 -163842204 + AT_rich Low_complexity Low_complexity 1 23 0 186 167 0 0 chr1 78822213 78822243 -163842110 + MIR SINE MIR 218 247 -15 2314 80 3 3 chr1 78822274 78822585 -163841768 + AluSp SINE Alu 1 311 -2 250 338 57 62 chr1 78822613 78822823 -163841530 + MIR SINE MIR 48 256 -6 2157 105 0 20 chr1 78823119 78823423 -163840930 - AluSx SINE Alu -14 298 1 412 315 48 7 chr1 78823437 78823583 -163840770 - L2 LINE L2 0 3313 3162 2282 74 0 7 chr1 78823753 78824052 -163840301 - AluY SINE Alu -12 299 3 220 290 168 28 chr1 78824234 78824341 -163840012 - MIR SINE MIR 0 262 141 2297 181 36 34 chr1 78824422 78824924 -163839429 + MLT1D LTR MaLR 1 503 -2 1962 126 0 0 chr1 78825039 78825317 -163839036 + AluSx SINE Alu 1 278 -34 288 0 0 0 chr1 78825319 78825351 -163839002 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 273 376 79 6 chr1 78825563 78825741 -163838612 - L2 LINE L2 -557 2757 2567 2181 112 0 0 chr1 78825795 78826100 -163838253 - AluSx SINE Alu -7 305 1 771 233 13 0 chr1 78826106 78826265 -163838088 - AluJb SINE Alu -15 297 137 1289 181 199 29 chr1 78826286 78826457 -163837896 + Charlie1b DNA MER1_type 1 142 -2619 2228 86 16 0 chr1 78826457 78826761 -163837592 - AluSg SINE Alu -1 309 1 1289 181 199 29 chr1 78826761 78827036 -163837317 + Charlie1b DNA MER1_type 142 523 0 239 252 180 50 chr1 78827397 78827536 -163836817 + MIR3 SINE MIR 46 202 -6 635 245 75 0 chr1 78827779 78827938 -163836415 - MIR SINE MIR -58 204 34 318 259 241 74 chr1 78827966 78828071 -163836282 - MIR SINE MIR 0 262 176 2060 114 0 3 chr1 78828071 78828369 -163835984 - AluSg SINE Alu -13 297 1 318 259 241 74 chr1 78828369 78828479 -163835874 - MIR SINE MIR -86 176 11 902 274 8 34 chr1 78828578 78828812 -163835541 - MIR SINE MIR -31 231 4 1594 165 23 30 chr1 78829014 78829317 -163835036 + AluJb SINE Alu 1 301 -11 181 301 65 65 chr1 78830010 78830133 -163834220 - L2 LINE L2 -1120 2194 2072 380 286 11 65 chr1 78831165 78831393 -163832960 + L1ME3A LINE L1 5327 5513 -651 2396 50 0 7 chr1 78831393 78831692 -163832661 + AluY SINE Alu 5 301 -10 380 286 11 65 chr1 78831692 78831723 -163832630 + L1ME3A LINE L1 5513 5544 -620 1163 186 83 28 chr1 78831739 78831992 -163832361 + AluJo SINE Alu 1 267 -45 813 83 37 0 chr1 78832269 78832377 -163831976 + MLT1A2 LTR MaLR 263 374 0 643 251 89 115 chr1 78832377 78832839 -163831514 + L1ME3A LINE L1 5721 6170 0 207 69 0 0 chr1 78832936 78832965 -163831388 + (TG)n Simple_repeat Simple_repeat 2 30 0 997 298 80 36 chr1 78833005 78833341 -163831012 + HAL1 LINE L1 162 512 -1995 655 218 82 41 chr1 78833511 78833731 -163830622 + HAL1 LINE L1 584 812 -1695 2272 101 0 3 chr1 78833731 78834038 -163830315 - AluSg SINE Alu -4 306 1 269 240 10 62 chr1 78834120 78834216 -163830137 - L1MC5 LINE L1 -48 7913 7823 774 136 0 0 chr1 78834258 78834368 -163829985 + FLAM_C SINE Alu 2 111 -32 246 32 0 0 chr1 78834379 78834410 -163829943 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 770 190 84 49 chr1 78834415 78834699 -163829654 - L1MC5 LINE L1 -169 7792 7499 225 83 0 0 chr1 78834708 78834744 -163829609 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1650 188 0 0 chr1 78834746 78835028 -163829325 - AluJb SINE Alu -30 282 1 22 35 0 0 chr1 78835412 78835441 -163828912 + AT_rich Low_complexity Low_complexity 1 29 0 2866 79 0 0 chr1 78835878 78836233 -163828120 + THE1A LTR MaLR 1 355 0 2038 130 7 0 chr1 78836286 78836585 -163827768 - AluSx SINE Alu -11 301 1 2121 125 3 0 chr1 78837089 78837400 -163826953 - AluSx SINE Alu 0 312 1 2322 156 5 55 chr1 78837444 78837494 -163826859 - Tigger2a DNA MER2_type -2294 414 363 2197 111 0 3 chr1 78837494 78837801 -163826552 - AluSq SINE Alu -7 306 1 1815 150 17 17 chr1 78837804 78838098 -163826255 - AluSx SINE Alu -18 294 1 2322 156 5 55 chr1 78838098 78838479 -163825874 - Tigger2a DNA MER2_type -2347 361 1 183 136 15 30 chr1 78838564 78838618 -163825735 + (TAAA)n Simple_repeat Simple_repeat 3 57 -10 2079 112 3 20 chr1 78838618 78838921 -163825432 + AluSg SINE Alu 1 298 -12 183 136 15 30 chr1 78838921 78838932 -163825421 + (TAAA)n Simple_repeat Simple_repeat 57 67 0 286 196 217 43 chr1 78838933 78839025 -163825328 + LTR9 LTR ERV1 53 160 -452 26 0 0 0 chr1 78839136 78839162 -163825191 + AT_rich Low_complexity Low_complexity 1 26 0 1122 122 0 0 chr1 78839162 78839318 -163825035 - AluSc SINE Alu -24 285 130 1888 119 11 3 chr1 78839330 78839616 -163824737 - AluSx SINE Alu -19 293 6 1965 124 10 0 chr1 78839627 78839926 -163824427 - AluSp SINE Alu -11 302 1 359 230 50 105 chr1 78839927 78840109 -163824244 + LTR9B LTR ERV1 135 305 -339 6342 59 155 65 chr1 78840109 78841184 -163823169 + MER11A LTR ERVK 1 1266 0 1046 269 12 37 chr1 78841184 78841508 -163822845 + LTR9 LTR ERV1 297 612 0 341 187 0 122 chr1 78841514 78841621 -163822732 - L1MC5 LINE L1 -739 7222 7129 416 278 72 50 chr1 78841677 78842075 -163822278 - HAL1b LINE L1 -786 562 216 1212 227 30 42 chr1 78842098 78842433 -163821920 + MER4B-int LTR ERV1 1966 2296 -4035 440 226 0 2 chr1 78842417 78842508 -163821845 + MER4B-int LTR ERV1 2646 2722 -3224 * 378 185 0 0 chr1 78842539 78842604 -163821749 + MER34C LTR ERV1 160 224 -361 443 173 27 157 chr1 78842671 78842856 -163821497 + MER4B-int LTR ERV1 1190 1350 -3773 880 167 0 0 chr1 78842927 78843065 -163821288 - AluJb SINE Alu -27 285 148 298 98 24 0 chr1 78843128 78843169 -163821184 - FLAM SINE Alu -7 126 85 1897 134 10 0 chr1 78843179 78843478 -163820875 - AluSg SINE Alu -8 302 1 2194 181 30 31 chr1 78843479 78844266 -163820087 + MER4B-int LTR ERV1 2608 3342 -1922 * 4765 136 26 57 chr1 78844250 78844714 -163819639 + MER4B-int LTR ERV1 4566 4610 -1721 4617 127 14 14 chr1 78844714 78845405 -163818948 + LTR8 LTR ERV1 1 691 0 4765 136 26 57 chr1 78845405 78845941 -163818412 + MER4B-int LTR ERV1 4610 5161 -1170 1433 108 37 5 chr1 78845941 78846155 -163818198 + AluSq SINE Alu 1 221 -92 417 331 0 38 chr1 78846168 78846352 -163818001 + CT-rich Low_complexity Low_complexity 4 180 0 574 188 0 10 chr1 78846452 78846548 -163817805 - AluJ/FLAM SINE Alu -216 96 2 420 247 295 58 chr1 78846720 78846910 -163817443 + MIR SINE MIR 20 254 -8 954 196 21 75 chr1 78847116 78847356 -163816997 - MIR SINE MIR -21 241 15 200 94 31 0 chr1 78847371 78847403 -163816950 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 220 239 211 14 chr1 78847416 78847487 -163816866 - MIR SINE MIR -57 151 67 833 218 151 78 chr1 78847495 78847593 -163816760 + MLT1I LTR MaLR 55 144 -265 2292 107 0 0 chr1 78847593 78847903 -163816450 + AluSx SINE Alu 1 310 -2 833 218 151 78 chr1 78847903 78848135 -163816218 + MLT1I LTR MaLR 144 409 0 328 307 45 67 chr1 78849144 78849323 -163815030 - MIR3 SINE MIR -18 190 16 255 283 0 0 chr1 78849633 78849693 -163814660 + MIR SINE MIR 58 117 -145 216 0 0 0 chr1 78849943 78849967 -163814386 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 324 0 0 0 chr1 78849966 78850002 -163814351 + (CA)n Simple_repeat Simple_repeat 1 36 0 283 242 305 0 chr1 78850208 78850303 -163814050 - MIR SINE MIR -62 200 77 780 252 24 24 chr1 78850388 78850598 -163813755 + MIR SINE MIR 12 221 -41 287 312 2 47 chr1 78851016 78851122 -163813231 - MIR SINE MIR -112 96 15 189 0 0 0 chr1 78851337 78851358 -163812995 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 448 295 39 8 chr1 78851367 78851496 -163812857 - L2 LINE L2 -2 3270 3138 1972 124 0 0 chr1 78851543 78851826 -163812527 - AluSq SINE Alu -30 283 1 289 229 92 64 chr1 78851828 78851937 -163812416 + MER5B DNA MER1_type 18 129 -49 1628 169 9 19 chr1 78851949 78852269 -163812084 - L1MC3 LINE L1 0 7785 7469 189 0 0 0 chr1 78852271 78852292 -163812061 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 205 211 79 0 chr1 78852292 78852330 -163812023 - MER5B DNA MER1_type -132 46 6 657 262 12 12 chr1 78852347 78852511 -163811842 + MIR SINE MIR 22 185 -77 1817 143 44 0 chr1 78852570 78852864 -163811489 - AluSx SINE Alu -5 307 1 1557 167 0 8 chr1 78854482 78854745 -163809608 + AluJo SINE Alu 1 261 -51 2311 80 0 0 chr1 78854857 78855159 -163809194 - AluSc SINE Alu -7 302 1 259 298 74 8 chr1 78855358 78855479 -163808874 + MIR SINE MIR 106 234 -28 375 237 130 50 chr1 78855518 78855679 -163808674 - MIR3 SINE MIR -60 148 8 739 176 71 77 chr1 78856366 78856548 -163807805 - L3 LINE CR1 -29 1548 1368 954 273 131 0 chr1 78856657 78857001 -163807352 + LTR16A LTR ERVL 16 404 -46 324 217 123 22 chr1 78857024 78857162 -163807191 - MLT1K LTR MaLR -74 514 363 627 330 92 43 chr1 78857481 78857947 -163806406 - L3 LINE CR1 -251 1326 838 278 316 94 41 chr1 78858062 78858233 -163806120 + MIR SINE MIR 37 216 -46 2222 78 3 0 chr1 78858293 78858576 -163805777 + AluSx SINE Alu 13 296 -16 288 53 0 0 chr1 78858672 78858710 -163805643 + (CA)n Simple_repeat Simple_repeat 1 38 0 262 239 119 0 chr1 78858846 78858913 -163805440 + MER112 DNA MER1_type 178 252 -8 335 222 51 114 chr1 78858977 78859153 -163805200 - L2 LINE L2 -159 3113 2949 204 125 0 0 chr1 78859341 78859373 -163804980 + (CA)n Simple_repeat Simple_repeat 2 33 0 225 0 0 0 chr1 78860199 78860224 -163804129 + (GA)n Simple_repeat Simple_repeat 2 26 0 256 316 259 0 chr1 78860361 78860519 -163803834 + L2 LINE L2 2870 3068 -204 1981 121 7 0 chr1 78860546 78860843 -163803510 - AluSq SINE Alu -14 299 1 2808 77 3 3 chr1 78860870 78861223 -163803130 - THE1A LTR MaLR -2 353 1 1583 156 39 12 chr1 78861322 78861578 -163802775 - AluJo SINE Alu -49 263 1 873 326 54 6 chr1 78861644 78861997 -163802356 - LTR16A LTR ERVL 0 450 81 1173 123 0 12 chr1 78862036 78862206 -163802147 + AluJb SINE Alu 82 249 -63 194 200 44 0 chr1 78862272 78862317 -163802036 - L2 LINE L2 -3 3310 3264 214 272 54 22 chr1 78862560 78862652 -163801701 - MIR SINE MIR -118 144 50 204 293 35 0 chr1 78863174 78863232 -163801121 + L2 LINE L2 3188 3247 -25 463 298 8 0 chr1 78863370 78863501 -163800852 - L2 LINE L2 -1 3312 3181 1520 148 119 73 chr1 78863633 78863792 -163800561 + LTR49-int LTR ERV1 4427 4577 -546 2290 127 0 0 chr1 78863792 78864099 -163800254 - AluSx SINE Alu -5 307 1 1520 148 119 73 chr1 78864099 78864307 -163800046 + LTR49-int LTR ERV1 4577 4774 -349 234 0 0 0 chr1 78864307 78864333 -163800020 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 369 0 0 0 chr1 78864337 78864378 -163799975 + (TG)n Simple_repeat Simple_repeat 1 41 0 1520 148 119 73 chr1 78864378 78864392 -163799961 + LTR49-int LTR ERV1 4776 4682 -441 2410 89 0 0 chr1 78864392 78864684 -163799669 + AluSg SINE Alu 1 292 -18 1520 148 119 73 chr1 78864684 78864753 -163799600 + LTR49-int LTR ERV1 4681 4745 -378 186 71 0 0 chr1 78864762 78864790 -163799563 + (TC)n Simple_repeat Simple_repeat 1 28 0 1044 161 12 0 chr1 78864790 78864952 -163799401 - AluSg/x SINE Alu -14 296 133 1409 202 6 35 chr1 78864973 78865290 -163799063 - AluJo SINE Alu -4 308 1 1453 163 12 40 chr1 78865330 78865582 -163798771 - AluSx SINE Alu -21 291 47 2026 117 0 0 chr1 78865616 78865882 -163798471 - AluSq SINE Alu -47 266 1 994 192 15 92 chr1 78865882 78866131 -163798222 + LTR49-int LTR ERV1 5840 6070 -688 1047 153 10 9 chr1 78866137 78866394 -163797959 + LTR47A LTR ERVL 2 308 -144 230 100 0 100 chr1 78866395 78866435 -163797918 + LTR47A LTR ERVL 417 452 0 327 104 0 0 chr1 78866479 78866527 -163797826 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 1881 164 10 3 chr1 78866527 78866831 -163797522 - AluSq SINE Alu -7 306 1 267 194 41 82 chr1 78867340 78867438 -163796915 + L1MB8 LINE L1 6075 6168 -10 692 142 0 33 chr1 78867438 78867558 -163796795 - FLAM_C SINE Alu -16 117 2 412 298 164 10 chr1 78867946 78868154 -163796199 + MIR SINE MIR 15 254 -8 1257 198 0 0 chr1 78869165 78869377 -163794976 - AluJo SINE Alu -14 298 87 400 275 40 27 chr1 78869683 78869832 -163794521 - MIR SINE MIR -109 153 3 1841 158 3 3 chr1 78870055 78870347 -163794006 + AluJb SINE Alu 1 292 -20 975 118 6 22 chr1 78870496 78870674 -163793679 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 186 133 0 0 chr1 78870676 78870706 -163793647 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 2607 37 0 7 chr1 78870780 78871079 -163793274 - AluY SINE Alu -14 297 1 254 210 65 0 chr1 78871285 78871347 -163793006 + CT-rich Low_complexity Low_complexity 2 67 0 212 313 71 0 chr1 78871348 78871447 -163792906 - L2 LINE L2 -14 3299 3194 779 264 25 21 chr1 78871461 78871703 -163792650 + MIR SINE MIR 20 262 0 1837 131 61 17 chr1 78872147 78872444 -163791909 - AluJo SINE Alu -2 310 1 519 68 0 14 chr1 78872668 78872742 -163791611 - MER41B LTR ERV1 -86 549 477 1251 108 70 5 chr1 78873051 78873236 -163791117 + MER30 DNA MER1_type 1 197 -33 246 159 0 0 chr1 78873404 78873448 -163790905 + MLT1C LTR MaLR 65 108 -359 330 260 58 10 chr1 78873461 78873565 -163790788 + MIR SINE MIR 54 162 -100 2253 108 3 7 chr1 78873603 78873908 -163790445 - AluSx SINE Alu -8 304 1 712 244 14 106 chr1 78873930 78874213 -163790140 + MER46C DNA MER2_type 80 336 -2 1224 127 0 0 chr1 78874514 78874687 -163789666 + AluSp SINE Alu 129 301 -12 253 262 24 87 chr1 78874861 78874922 -163789431 - MER94 DNA DNA -15 119 69 2907 62 3 41 chr1 78874922 78874993 -163789360 - THE1C LTR MaLR 0 375 303 2263 119 3 0 chr1 78874993 78875296 -163789057 - AluSx SINE Alu -8 304 1 2907 62 3 41 chr1 78875296 78875614 -163788739 - THE1C LTR MaLR -72 303 1 253 262 24 87 chr1 78875614 78875678 -163788675 - MER94 DNA DNA -65 69 2 453 306 15 30 chr1 78875842 78875927 -163788426 + MIR SINE MIR 7 92 -170 1460 202 160 38 chr1 78875927 78876377 -163787976 + MLT1D LTR MaLR 1 505 0 453 306 15 30 chr1 78876377 78876490 -163787863 + MIR SINE MIR 92 202 -60 184 279 10 76 chr1 78876810 78876998 -163787355 + MIR SINE MIR 47 256 -6 2096 116 0 14 chr1 78877015 78877308 -163787045 - AluSx SINE Alu -23 289 1 276 153 203 0 chr1 78877362 78877421 -163786932 - L2 LINE L2 0 3272 3202 26 0 0 0 chr1 78877554 78877580 -163786773 + AT_rich Low_complexity Low_complexity 1 26 0 264 119 119 51 chr1 78877779 78877838 -163786515 + L1ME4a LINE L1 5955 6017 -104 2552 75 0 0 chr1 78877878 78878185 -163786168 - AluY SINE Alu -4 307 1 2379 99 3 6 chr1 78878186 78878500 -163785853 - AluSp SINE Alu 0 313 1 186 133 0 0 chr1 78879257 78879287 -163785066 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 1038 182 0 0 chr1 78879833 78880009 -163784344 - AluSg/x SINE Alu 0 310 135 438 221 37 15 chr1 78880018 78880154 -163784199 - L1MC5 LINE L1 -34 7927 7789 224 245 274 10 chr1 78880443 78880545 -163783808 - MIR SINE MIR -118 144 16 1664 160 7 48 chr1 78880821 78881163 -163783190 + AluJo SINE Alu 1 330 0 430 207 23 0 chr1 78882271 78882358 -163781995 + AluJo/FLAM SINE Alu 28 116 -196 2116 104 25 0 chr1 78882361 78882662 -163781691 - AluSq SINE Alu 0 308 1 261 234 47 0 chr1 78882736 78882800 -163781553 + MER5A DNA MER1_type 64 130 -59 252 336 69 0 chr1 78882818 78882949 -163781404 + MIR SINE MIR 91 230 -32 795 231 42 23 chr1 78883094 78883310 -163781043 - MIR SINE MIR -11 251 32 2086 144 0 0 chr1 78883400 78883698 -163780655 - AluSx SINE Alu -14 298 1 337 264 83 69 chr1 78884045 78884322 -163780031 + L2 LINE L2 3030 3310 -3 2315 111 0 9 chr1 78884782 78885097 -163779256 - AluSx SINE Alu 0 312 1 372 247 84 24 chr1 78885622 78885788 -163778565 + MIR SINE MIR 78 253 -9 291 236 139 21 chr1 78885850 78885994 -163778359 + L2 LINE L2 3140 3300 -13 224 275 101 9 chr1 78886219 78886328 -163778025 - L2 LINE L2 -213 3059 2941 665 193 267 23 chr1 78886421 78886597 -163777756 - MER58A DNA MER1_type 0 224 6 1907 234 106 2 chr1 78886689 78887180 -163777173 - MLT1F LTR MaLR 0 542 1 2551 56 0 10 chr1 78887535 78887840 -163776513 + AluY SINE Alu 1 302 -9 2009 169 0 3 chr1 78888387 78888700 -163775653 + AluJb SINE Alu 1 312 0 365 234 202 0 chr1 78889111 78889205 -163775148 + MIR SINE MIR 7 119 -143 848 130 15 23 chr1 78889205 78889336 -163775017 - FLAM_A SINE Alu -1 141 12 528 217 14 28 chr1 78889346 78889489 -163774864 + MIR SINE MIR 113 253 -9 448 326 68 37 chr1 78889555 78889623 -163774730 - L3 LINE CR1 -138 1439 1375 1609 154 81 0 chr1 78889623 78889895 -163774458 + AluJb SINE Alu 1 294 -18 448 326 68 37 chr1 78889895 78890148 -163774205 - L3 LINE CR1 -202 1375 1108 1317 179 4 27 chr1 78891143 78891406 -163772947 - L1MB8 LINE L1 -12 6166 5910 1757 129 32 82 chr1 78891412 78891703 -163772650 + Tigger3(Golem) DNA MER2_type 11 284 -2745 1708 154 6 58 chr1 78891703 78891865 -163772488 - AluJb SINE Alu -17 295 155 2318 76 3 54 chr1 78891865 78892180 -163772173 - AluY SINE Alu -11 300 2 1708 154 6 58 chr1 78892180 78892328 -163772025 - AluJb SINE Alu -157 155 1 1757 129 32 82 chr1 78892328 78892376 -163771977 + Tigger3(Golem) DNA MER2_type 284 333 -2696 1530 185 5 60 chr1 78892382 78892620 -163771733 - L1MB8 LINE L1 -869 5277 5064 1716 169 38 10 chr1 78892620 78892910 -163771443 - AluJb SINE Alu -12 300 3 1530 185 5 60 chr1 78892910 78893039 -163771314 - L1MB8 LINE L1 -1082 5064 4930 1861 162 3 13 chr1 78893149 78893451 -163770902 - AluJo SINE Alu -13 299 1 303 379 8 0 chr1 78893509 78893641 -163770712 - L1ME LINE L1 -480 5641 5509 504 261 112 61 chr1 78893971 78894266 -163770087 + L2 LINE L2 3002 3311 -2 2406 98 0 10 chr1 78894442 78894749 -163769604 + AluSx SINE Alu 1 304 -8 1369 153 88 0 chr1 78894772 78895055 -163769298 + MER33 DNA MER1_type 1 296 -28 2123 139 0 0 chr1 78895072 78895382 -163768971 - AluSx SINE Alu -2 310 1 1713 170 3 3 chr1 78895447 78895736 -163768617 + AluJo SINE Alu 19 307 -5 2199 124 0 0 chr1 78895739 78896045 -163768308 + AluSx SINE Alu 1 306 -6 476 264 18 24 chr1 78896134 78896301 -163768052 + MIR3 SINE MIR 30 195 -13 2316 97 3 3 chr1 78896536 78896888 -163767465 + AluSq SINE Alu 1 352 0 660 273 11 6 chr1 78897078 78897254 -163767099 - MIR SINE MIR -57 205 29 223 128 0 0 chr1 78897486 78897525 -163766828 + MIR SINE MIR 221 259 -3 419 258 14 41 chr1 78897773 78897980 -163766373 + L2 LINE L2 2693 2963 -350 562 62 0 0 chr1 78897991 78898072 -163766281 + Alu SINE Alu 232 312 0 260 151 151 58 chr1 78898076 78898162 -163766191 + L2 LINE L2 3215 3308 -5 254 253 10 71 chr1 78898201 78898243 -163766110 - MIR SINE MIR -106 156 113 2332 101 0 3 chr1 78898243 78898550 -163765803 + AluSc SINE Alu 1 306 -3 254 253 10 71 chr1 78898550 78898606 -163765747 - MIR SINE MIR -149 113 64 1538 191 21 14 chr1 78898776 78899059 -163765294 + AluJo SINE Alu 1 285 -27 2262 95 7 0 chr1 78899190 78899485 -163764868 - AluSx SINE Alu -15 297 1 2363 109 0 0 chr1 78899492 78899795 -163764558 - AluSg SINE Alu -7 303 1 363 174 51 31 chr1 78900079 78900177 -163764176 - MIR3 SINE MIR -4 204 105 765 143 6 119 chr1 79000525 79000565 -163663788 - AluJo SINE Alu -162 150 107 2177 111 0 20 chr1 79000565 79000862 -163663491 + AluSg1 SINE Alu 3 293 -16 765 143 6 119 chr1 79000862 79000989 -163663364 - AluJo SINE Alu -205 107 2 439 250 118 0 chr1 79001478 79001622 -163662731 - MIR SINE MIR -70 192 32 2312 101 3 0 chr1 79001980 79002276 -163662077 + AluSc SINE Alu 1 297 -12 1010 227 81 21 chr1 79002307 79002656 -163661697 - MLT1H LTR MaLR 0 549 125 1610 241 16 13 chr1 79002656 79003029 -163661324 + MLT1A2 LTR MaLR 1 374 0 1010 227 81 21 chr1 79003029 79003161 -163661192 - MLT1H LTR MaLR -424 125 2 660 284 63 0 chr1 79003214 79003404 -163660949 + MIR SINE MIR 58 259 -3 656 293 22 36 chr1 79003447 79003672 -163660681 + MIR SINE MIR 41 262 0 347 319 107 33 chr1 79003768 79004160 -163660193 - MLT1K LTR MaLR 0 588 168 3213 145 8 14 chr1 79004275 79004764 -163659589 - MER66B LTR ERV1 0 486 1 314 280 127 45 chr1 79005499 79005656 -163658697 + MIR SINE MIR 1 170 -92 521 204 7 0 chr1 79005731 79005868 -163658485 + (CACCAT)n Simple_repeat Simple_repeat 1 138 0 292 244 87 26 chr1 79005890 79006005 -163658348 + L2 LINE L2 2539 2660 -654 228 358 74 34 chr1 79006105 79006281 -163658072 + L2 LINE L2 2851 3033 -239 428 253 110 14 chr1 79006297 79006443 -163657910 + MER113 DNA MER1_type? 242 401 -120 200 328 15 0 chr1 79006715 79006782 -163657571 + MIR3 SINE MIR 120 187 -21 565 280 267 10 chr1 79007646 79008035 -163656318 + L2 LINE L2 2825 3313 0 339 268 231 28 chr1 79008223 79008399 -163655954 + MIR3 SINE MIR 27 239 -23 839 182 0 6 chr1 79008466 79008647 -163655706 + GA-rich Low_complexity Low_complexity 1 180 0 1017 98 17 11 chr1 79008656 79008830 -163655523 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 270 0 0 0 chr1 79008831 79008861 -163655492 + (GGAAA)n Simple_repeat Simple_repeat 1 30 0 450 292 16 52 chr1 79109854 79110046 -163554307 - MIR SINE MIR -57 205 21 605 247 46 23 chr1 79110935 79111109 -163553244 - MIR SINE MIR -13 249 72 752 281 51 24 chr1 79111408 79111661 -163552692 + MIR SINE MIR 2 261 -1 299 286 126 98 chr1 79111740 79112289 -163552064 - L2 LINE L2 0 3272 2712 394 242 53 45 chr1 79112537 79112740 -163551613 + MIR SINE MIR 6 258 -4 2227 119 3 0 chr1 79112770 79113081 -163551272 + AluSx SINE Alu 1 312 0 1212 151 18 18 chr1 79113172 79113397 -163550956 - L1MB8 LINE L1 -11 6167 5943 184 294 20 0 chr1 79113815 79113866 -163550487 - MIR SINE MIR -1 261 210 580 198 0 0 chr1 79114075 79114171 -163550182 + FLAM_A SINE Alu 38 133 -9 1957 133 23 7 chr1 79114355 79114656 -163549697 - AluSq SINE Alu -7 306 1 519 325 142 13 chr1 79114848 79115165 -163549188 + L2 LINE L2 2947 3304 -9 21 0 0 0 chr1 79115279 79115300 -163549053 + AT_rich Low_complexity Low_complexity 1 21 0 2414 76 3 3 chr1 79115409 79115713 -163548640 - AluY SINE Alu -7 304 1 713 144 14 149 chr1 79115772 79115785 -163548568 + L1MB7 LINE L1 5010 5023 -1123 2252 75 7 10 chr1 79115785 79116078 -163548275 - AluY SINE Alu -17 294 3 713 144 14 149 chr1 79116078 79116170 -163548183 + L1MB7 LINE L1 5023 5072 -1074 1838 157 10 10 chr1 79116170 79116482 -163547871 + AluJb SINE Alu 1 312 0 713 144 14 149 chr1 79116482 79116597 -163547756 + L1MB7 LINE L1 5072 5201 -945 5145 160 25 8 chr1 79116639 79117633 -163546720 + L1MB7 LINE L1 5153 6173 -11 562 259 85 60 chr1 79118035 79118236 -163546117 + MIR SINE MIR 39 244 -18 1359 122 0 54 chr1 79118250 79118472 -163545881 + AluSx SINE Alu 1 210 -102 26 30 0 0 chr1 79118954 79118987 -163545366 + AT_rich Low_complexity Low_complexity 1 33 0 235 212 14 199 chr1 79119376 79119522 -163544831 + MIR SINE MIR 92 210 -52 206 282 87 10 chr1 79120109 79120212 -163544141 + MIR SINE MIR 36 146 -62 25 31 0 0 chr1 79125091 79125123 -163539230 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 79125228 79125266 -163539087 + AT_rich Low_complexity Low_complexity 1 38 0 1127 205 78 26 chr1 79125637 79125905 -163538448 - AluJo SINE Alu -18 294 13 24 53 0 0 chr1 79126695 79126733 -163537620 + AT_rich Low_complexity Low_complexity 1 38 0 995 111 0 15 chr1 79127728 79127863 -163536490 - FLAM_C SINE Alu 0 133 1 2031 144 3 0 chr1 79128134 79128439 -163535914 - AluSq SINE Alu -7 306 1 1812 96 71 3 chr1 79128449 79128731 -163535622 - AluSq SINE Alu -12 301 1 405 0 0 0 chr1 79128757 79128802 -163535551 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 370 356 44 17 chr1 79129051 79129231 -163535122 - L3 LINE CR1 -1211 366 182 1040 186 6 17 chr1 79129305 79129482 -163534871 - FAM SINE Alu 0 175 1 2090 123 0 13 chr1 79129496 79129806 -163534547 - AluSx SINE Alu -5 307 2 1949 118 62 3 chr1 79129819 79130107 -163534246 - AluSq SINE Alu -7 306 2 347 257 9 38 chr1 79130435 79130540 -163533813 - MLT1G1 LTR MaLR 0 555 454 1375 103 0 0 chr1 79130540 79130725 -163533628 - AluSg/x SINE Alu 0 310 126 2336 76 0 20 chr1 79130727 79130892 -163533461 - AluSx SINE Alu -14 298 140 2414 74 10 0 chr1 79130892 79131190 -163533163 - AluY SINE Alu -10 301 1 2336 76 0 20 chr1 79131190 79131328 -163533025 - AluSx SINE Alu -172 140 1 585 200 26 9 chr1 79131378 79131493 -163532860 + MER45 DNA AcHobo 1 117 -923 25 31 0 0 chr1 79131521 79131553 -163532800 + AT_rich Low_complexity Low_complexity 1 32 0 285 228 24 0 chr1 79131649 79131718 -163532635 + MER45 DNA AcHobo 1505 1580 -1 854 209 103 77 chr1 79131719 79132046 -163532307 - MLT1G1 LTR MaLR -163 420 103 2327 110 0 0 chr1 79132046 79132355 -163531998 - AluSx SINE Alu -1 311 3 681 160 0 8 chr1 79132363 79132488 -163531865 - L1MA8 LINE L1 0 6291 6168 854 209 103 77 chr1 79132488 79132593 -163531760 - MLT1G1 LTR MaLR -486 97 1 2088 98 0 7 chr1 79133410 79133684 -163530669 - AluSx SINE Alu -40 272 1 2228 84 17 0 chr1 79133826 79134124 -163530229 - AluSp SINE Alu -5 308 6 1823 125 64 0 chr1 79134409 79134689 -163529664 - AluSx SINE Alu -14 298 1 225 300 154 0 chr1 79135063 79135173 -163529180 + MIR3 SINE MIR 49 175 -33 1556 138 261 14 chr1 79136926 79137274 -163527079 - Tigger2a DNA MER2_type 0 434 1 2027 136 3 7 chr1 79137584 79137885 -163526468 - AluSx SINE Alu -12 300 1 2310 89 10 3 chr1 79138085 79138388 -163525965 + AluSx SINE Alu 1 305 -7 1774 195 7 7 chr1 79138549 79138856 -163525497 + AluSg SINE Alu 1 307 -3 673 213 31 0 chr1 79138888 79139015 -163525338 + MER2 DNA MER2_type 6 136 -209 645 173 19 0 chr1 79139042 79139146 -163525207 - U6 snRNA snRNA -1 106 1 870 186 0 8 chr1 79139158 79139379 -163524974 - AluJb SINE Alu -22 290 2 2035 136 7 7 chr1 79140047 79140348 -163524005 + AluJb SINE Alu 1 301 -11 262 289 13 26 chr1 79140667 79140743 -163523610 - MER5A DNA MER1_type -34 155 81 243 238 139 60 chr1 79141389 79141540 -163522813 - MIR SINE MIR -7 255 93 298 341 32 24 chr1 79141670 79141793 -163522560 + L2 LINE L2 3141 3264 -8 1699 171 66 0 chr1 79142270 79142556 -163521797 + AluSx SINE Alu 1 305 -7 2271 106 3 3 chr1 79142692 79142993 -163521360 - AluSx SINE Alu -11 301 1 21 36 0 0 chr1 79145396 79145424 -163518929 + AT_rich Low_complexity Low_complexity 1 28 0 348 43 0 0 chr1 79146926 79146972 -163517381 + (TG)n Simple_repeat Simple_repeat 2 47 0 226 204 56 0 chr1 79146976 79147030 -163517323 + MER58 DNA MER1_type 60 116 -99 1077 126 31 0 chr1 79147122 79147281 -163517072 - AluSg/x SINE Alu -19 293 130 575 161 86 0 chr1 79147303 79147396 -163516957 + AluSg/x SINE Alu 190 290 -20 2260 96 7 3 chr1 79148849 79149150 -163515203 - AluSx SINE Alu -10 302 1 1910 153 0 0 chr1 79149151 79149433 -163514920 - AluSx SINE Alu -19 293 12 2005 112 27 24 chr1 79151629 79151925 -163512428 - AluSq SINE Alu -16 297 1 198 0 0 0 chr1 79152412 79152434 -163511919 + (TA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr1 79152434 79152456 -163511897 + AT_rich Low_complexity Low_complexity 1 22 0 2350 91 0 0 chr1 79152468 79152764 -163511589 + AluSg SINE Alu 2 297 -13 946 161 60 83 chr1 79152772 79152990 -163511363 - AluJo SINE Alu -99 213 1 445 211 87 25 chr1 79153030 79153191 -163511162 + MER104 DNA Tc2 6 176 -4 256 279 59 0 chr1 79153193 79153261 -163511092 - L1MC/D LINE L1 -2007 5801 5730 2187 118 0 25 chr1 79153437 79153751 -163510602 - AluSx SINE Alu -6 306 1 396 0 0 0 chr1 79153764 79153808 -163510545 + (TG)n Simple_repeat Simple_repeat 1 44 0 1007 147 0 0 chr1 79154493 79154636 -163509717 + AluJb SINE Alu 1 143 -169 2234 142 113 83 chr1 79154636 79155115 -163509238 - MER21A LTR ERV1 -35 896 400 1829 170 7 7 chr1 79155115 79155421 -163508932 - AluSx SINE Alu -6 306 1 2234 142 113 83 chr1 79155421 79155447 -163508906 - MER21A LTR ERV1 -531 400 376 898 130 163 89 chr1 79155452 79155644 -163508709 - MER21A LTR ERV1 -667 264 49 4103 115 30 50 chr1 79155644 79155822 -163508531 - MER41B LTR ERV1 -4 631 451 1940 110 20 10 chr1 79155822 79156137 -163508216 - AluSx SINE Alu 0 312 1 4103 115 30 50 chr1 79156137 79156602 -163507751 - MER41B LTR ERV1 -184 451 1 898 130 163 89 chr1 79156602 79156655 -163507698 - MER21A LTR ERV1 -882 49 1 2163 111 76 38 chr1 79157088 79157647 -163506706 + MER4A LTR ERV1 32 662 -2 276 300 150 0 chr1 79157660 79157760 -163506593 - L2 LINE L2 -20 3293 3179 23 33 0 0 chr1 79157828 79157858 -163506495 + AT_rich Low_complexity Low_complexity 1 30 0 2275 80 37 20 chr1 79159210 79159510 -163504843 - AluY SINE Alu -6 305 1 957 167 109 21 chr1 79159668 79159860 -163504493 - MER3 DNA MER1_type 0 209 1 2331 119 0 0 chr1 79161064 79161375 -163502978 - AluSx SINE Alu -1 311 1 197 399 91 7 chr1 79161638 79161781 -163502572 - L2 LINE L2 -474 2840 2686 276 232 72 116 chr1 79162512 79162650 -163501703 + MIR3 SINE MIR 48 179 -29 2069 100 40 13 chr1 79163437 79163737 -163500616 + AluSx SINE Alu 1 308 -4 355 279 106 39 chr1 79163950 79164158 -163500195 - L1MC4a LINE L1 -1922 5886 5665 719 219 25 56 chr1 79164300 79164419 -163499934 + MIR SINE MIR 44 156 -106 2230 80 3 30 chr1 79164419 79164720 -163499633 + AluY SINE Alu 2 294 -17 719 219 25 56 chr1 79164720 79164796 -163499557 + MIR SINE MIR 156 233 -29 42 77 0 0 chr1 79164799 79164890 -163499463 + AT_rich Low_complexity Low_complexity 1 91 0 234 0 0 0 chr1 79164977 79165003 -163499350 + (CA)n Simple_repeat Simple_repeat 2 27 0 427 298 70 18 chr1 79165122 79165293 -163499060 - MIR SINE MIR -52 210 31 183 80 0 0 chr1 79165882 79165907 -163498446 + (A)n Simple_repeat Simple_repeat 1 25 0 293 253 116 0 chr1 79166587 79166682 -163497671 - L2 LINE L2 0 3313 3208 307 157 14 43 chr1 79167046 79167116 -163497237 + MLT1I LTR MaLR 81 148 -261 438 225 133 58 chr1 79167134 79167307 -163497046 + MLT1J LTR MaLR 327 588 -27 278 238 131 8 chr1 79167592 79167714 -163496639 - L1ME4a LINE L1 0 6121 5985 741 88 0 0 chr1 79167715 79168013 -163496340 + AluSg SINE Alu 2 299 0 251 209 75 0 chr1 79168032 79168099 -163496254 + MLT1J LTR MaLR 1 72 -439 1582 147 16 16 chr1 79168187 79168439 -163495914 - AluSq SINE Alu -39 274 23 22 70 0 0 chr1 79169311 79169354 -163494999 + AT_rich Low_complexity Low_complexity 1 43 0 1684 181 49 12 chr1 79170210 79170423 -163493930 - MER58B DNA MER1_type -2082 338 107 2454 63 0 3 chr1 79170423 79170724 -163493629 - AluY SINE Alu -11 300 1 1684 181 49 12 chr1 79170724 79170835 -163493518 - MER58B DNA MER1_type -2313 107 2 689 333 21 12 chr1 79171101 79171428 -163492925 - L2 LINE L2 -1605 1709 1380 429 305 93 31 chr1 79172109 79172335 -163492018 + MIR SINE MIR 12 251 -11 276 213 9 74 chr1 79172518 79172626 -163491727 + A-rich Low_complexity Low_complexity 3 103 0 360 309 9 18 chr1 79172706 79172816 -163491537 + MIR SINE MIR 20 128 -134 294 270 161 20 chr1 79172839 79173019 -163491334 - MIR SINE MIR -11 251 50 195 227 167 45 chr1 79173578 79173644 -163490709 - L2 LINE L2 -1 3312 3239 291 54 0 0 chr1 79173848 79173885 -163490468 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 2174 115 0 31 chr1 79173989 79174311 -163490042 + AluJb SINE Alu 1 312 0 2389 92 0 0 chr1 79175147 79175450 -163488903 + AluSx SINE Alu 1 303 -9 272 181 23 199 chr1 79175597 79175768 -163488585 - MIR SINE MIR -71 191 51 202 220 37 128 chr1 79176426 79176535 -163487818 + MIR SINE MIR 108 206 -56 410 299 70 35 chr1 79176804 79177005 -163487348 - L3 LINE CR1 -15 1562 1355 1649 136 4 8 chr1 79177102 79177352 -163487001 + AluSx SINE Alu 26 274 -38 741 148 28 11 chr1 79177352 79177528 -163486825 + GA-rich Low_complexity Low_complexity 2 180 0 287 303 40 0 chr1 79177807 79177906 -163486447 - MIR3 SINE MIR 0 208 106 206 113 0 57 chr1 79178134 79178187 -163486166 + (T)n Simple_repeat Simple_repeat 1 50 0 482 270 6 6 chr1 79178416 79178579 -163485774 + (TG)n Simple_repeat Simple_repeat 1 163 0 1428 162 9 98 chr1 79178701 79179028 -163485325 - AluJb SINE Alu -14 298 1 1764 163 22 0 chr1 79179045 79179321 -163485032 - AluJb SINE Alu -30 282 1 432 263 45 30 chr1 79179825 79179958 -163484395 - L2 LINE L2 0 3272 3138 1018 162 10 167 chr1 79180117 79180235 -163484118 - MER33 DNA MER1_type -2262 323 188 2152 131 0 0 chr1 79180235 79180532 -163483821 - AluSx SINE Alu -15 297 1 1018 162 10 167 chr1 79180532 79180796 -163483557 - MER33 DNA MER1_type -2397 188 1 2003 117 52 7 chr1 79180840 79181131 -163483222 + AluSx SINE Alu 1 304 -8 495 284 20 40 chr1 79182011 79182159 -163482194 + MIR SINE MIR 3 147 -115 2171 137 3 0 chr1 79182318 79182625 -163481728 - AluSx SINE Alu -4 308 1 675 257 29 6 chr1 79182910 79183085 -163481268 - MIR SINE MIR -25 237 59 187 217 188 0 chr1 79183912 79183981 -163480372 + MIR SINE MIR 174 255 -7 485 351 6 23 chr1 79184336 79184507 -163479846 + MIR3 SINE MIR 16 183 -25 23 0 0 0 chr1 79184599 79184622 -163479731 + AT_rich Low_complexity Low_complexity 1 23 0 324 333 63 9 chr1 79186397 79186508 -163477845 - MIR SINE MIR -123 139 23 454 291 64 35 chr1 79187120 79187323 -163477030 + MIR SINE MIR 13 221 -41 637 261 0 0 chr1 79187455 79187585 -163476768 + FLAM_A SINE Alu 1 130 -3 205 136 23 23 chr1 79188096 79188140 -163476213 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 837 236 172 49 chr1 79188209 79188599 -163475754 - MLT1J LTR MaLR -67 444 7 902 290 58 28 chr1 79188643 79189071 -163475282 + L1ME LINE L1 5331 5771 -350 1442 171 37 33 chr1 79189230 79189529 -163474824 + AluJo SINE Alu 7 306 -6 210 248 165 68 chr1 79189905 79190038 -163474315 - L2 LINE L2 -1 3312 3167 970 177 0 0 chr1 79190904 79191062 -163473291 + FRAM SINE Alu 1 156 -20 2234 106 3 13 chr1 79191068 79191379 -163472974 + AluSx SINE Alu 1 308 -4 324 208 14 14 chr1 79191513 79191585 -163472768 - MIR SINE MIR -73 135 64 234 258 61 45 chr1 79191921 79191987 -163472366 + L2 LINE L2 3247 3313 0 1759 161 0 69 chr1 79193011 79193335 -163471018 + AluSx SINE Alu 1 303 0 701 319 99 49 chr1 79193657 79194230 -163470123 + L1MDa LINE L1 1326 2000 -901 2257 106 0 0 chr1 79194230 79194522 -163469831 + AluSq SINE Alu 1 292 -21 701 319 99 49 chr1 79194522 79194547 -163469806 + L1MDa LINE L1 2000 2022 -879 29 0 0 0 chr1 79194746 79194775 -163469578 + AT_rich Low_complexity Low_complexity 1 29 0 2128 140 3 0 chr1 79194798 79195106 -163469247 + AluSx SINE Alu 3 311 -1 281 298 71 6 chr1 79195199 79195367 -163468986 + L1M4 LINE L1 3600 3778 -2368 1959 147 27 0 chr1 79195376 79195668 -163468685 + AluSx SINE Alu 1 300 -12 11123 170 54 66 chr1 79195682 79196056 -163468297 + L1ME LINE L1 21 398 -6028 2160 108 17 0 chr1 79196056 79196352 -163468001 + AluSx SINE Alu 1 301 -11 11123 170 54 66 chr1 79196352 79196449 -163467904 + L1ME LINE L1 398 495 -5931 2301 111 0 3 chr1 79196449 79196747 -163467606 + AluSx SINE Alu 1 297 -15 11123 170 54 66 chr1 79196747 79197925 -163466428 + L1ME LINE L1 495 1686 -4740 2213 113 3 0 chr1 79197925 79198218 -163466135 + AluSx SINE Alu 1 294 -18 2949 9 0 0 chr1 79198220 79198538 -163465815 + AluYb8 SINE Alu 1 318 0 11123 170 54 66 chr1 79198538 79198845 -163465508 + L1ME LINE L1 1687 1996 -4430 2314 96 0 0 chr1 79198845 79199136 -163465217 - AluSc SINE Alu -18 291 1 2561 74 3 0 chr1 79199141 79199451 -163464902 - AluSp SINE Alu -2 311 1 11123 170 54 66 chr1 79199451 79200045 -163464308 + L1ME LINE L1 2000 2600 -3826 2086 138 3 0 chr1 79200045 79200342 -163464011 + AluSx SINE Alu 1 298 -14 11123 170 54 66 chr1 79200342 79201482 -163462871 + L1ME LINE L1 2600 3675 -2751 262 239 14 0 chr1 79201709 79201780 -163462573 + L1ME LINE L1 5289 5360 -1066 757 300 64 51 chr1 79201950 79202105 -163462248 + L1ME LINE L1 5539 5690 -754 2328 99 3 3 chr1 79202105 79202418 -163461935 + AluSq SINE Alu 1 313 0 757 300 64 51 chr1 79202418 79202712 -163461641 + L1ME LINE L1 5690 5994 -450 1800 179 10 17 chr1 79203046 79203347 -163461006 + AluJb SINE Alu 1 299 -13 723 107 8 15 chr1 79203367 79203498 -163460855 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 1177 200 44 0 chr1 79204620 79204845 -163459508 + MIR SINE MIR 13 247 -15 391 338 92 26 chr1 79205136 79205482 -163458871 + L3 LINE CR1 1126 1494 -83 2141 90 57 0 chr1 79205693 79205972 -163458381 + AluSg SINE Alu 1 295 -15 24 53 0 0 chr1 79207306 79207344 -163457009 + AT_rich Low_complexity Low_complexity 1 38 0 261 57 0 0 chr1 79207998 79208033 -163456320 + (TG)n Simple_repeat Simple_repeat 1 35 0 295 177 0 81 chr1 79208811 79208873 -163455480 + L2 LINE L2 3256 3312 -1 226 304 144 0 chr1 79208900 79209025 -163455328 - L2 LINE L2 -12 3301 3159 1862 140 10 10 chr1 79209047 79209340 -163455013 - AluJb SINE Alu -16 296 4 24 0 0 0 chr1 79209878 79209902 -163454451 + AT_rich Low_complexity Low_complexity 1 24 0 324 323 6 25 chr1 79210043 79210204 -163454149 - L1MC4a LINE L1 -1907 5901 5744 2271 118 0 0 chr1 79210402 79210708 -163453645 - AluSx SINE Alu -6 306 1 261 0 0 0 chr1 79210710 79210739 -163453614 + (T)n Simple_repeat Simple_repeat 1 29 0 227 314 71 0 chr1 79210971 79211041 -163453312 - L2 LINE L2 -73 3199 3125 1855 169 3 3 chr1 79211045 79211352 -163453001 + AluJb SINE Alu 1 307 -5 271 289 91 8 chr1 79211383 79211504 -163452849 - L2 LINE L2 -1372 1942 1812 2582 65 3 0 chr1 79211768 79212077 -163452276 - AluY SINE Alu -1 310 1 284 333 21 0 chr1 79212148 79212244 -163452109 + L2 LINE L2 3199 3296 -17 219 69 0 0 chr1 79212628 79212657 -163451696 + (TG)n Simple_repeat Simple_repeat 2 30 0 969 180 141 127 chr1 79213340 79213773 -163450580 + MER4C LTR ERV1 1 439 -26 1994 120 35 3 chr1 79213775 79214085 -163450268 + AluSx SINE Alu 1 319 0 2296 118 3 0 chr1 79214501 79214805 -163449548 + AluSg SINE Alu 1 305 -5 2210 116 7 0 chr1 79214847 79215149 -163449204 + AluSx SINE Alu 1 304 -8 2303 105 3 3 chr1 79215159 79215463 -163448890 + AluSx SINE Alu 1 304 -8 304 351 19 19 chr1 79216145 79216299 -163448054 + L2 LINE L2 2897 3050 -222 290 318 82 27 chr1 79216331 79216441 -163447912 + L2 LINE L2 3144 3259 -13 2705 144 86 5 chr1 79216527 79216956 -163447397 - MLT1C LTR MaLR -3 464 1 364 260 104 0 chr1 79217050 79217146 -163447207 - MIR SINE MIR -109 153 48 2411 77 0 10 chr1 79217414 79217726 -163446627 + AluY SINE Alu 1 309 -2 1338 114 0 0 chr1 79217762 79217946 -163446407 + AluSg/x SINE Alu 125 308 -2 824 154 0 23 chr1 79218032 79218162 -163446191 + FLAM_C SINE Alu 1 127 -6 197 337 123 37 chr1 79218265 79218591 -163445762 + L2 LINE L2 2621 2974 -340 1172 146 0 0 chr1 79218641 79218806 -163445547 - FRAM SINE Alu -15 161 1 2563 123 13 11 chr1 79218937 79219311 -163445042 - THE1C LTR MaLR 0 375 1 10201 112 34 43 chr1 79219311 79219655 -163444698 - THE1C-int LTR MaLR 0 1580 1234 1222 50 0 0 chr1 79219655 79219794 -163444559 - MER85 DNA T2_type 0 139 1 10201 112 34 43 chr1 79219794 79221043 -163443310 - THE1C-int LTR MaLR -346 1234 1 2762 87 11 21 chr1 79221047 79221426 -163442927 - THE1C LTR MaLR 0 375 1 313 348 49 18 chr1 79221426 79221590 -163442763 + L2 LINE L2 3101 3269 -3 461 301 57 9 chr1 79221718 79221857 -163442496 - MIR SINE MIR -2 260 103 2569 68 0 0 chr1 79221857 79222164 -163442189 + AluSg SINE Alu 1 307 -3 461 301 57 9 chr1 79222164 79222250 -163442103 - MIR SINE MIR -159 103 23 425 292 97 11 chr1 79222610 79222799 -163441554 + L1ME LINE L1 5450 5649 -472 441 0 0 0 chr1 79222801 79222850 -163441503 + (TA)n Simple_repeat Simple_repeat 1 49 0 226 347 0 16 chr1 79222871 79222992 -163441361 - AluSg/x SINE Alu -12 288 170 22 70 0 0 chr1 79223618 79223661 -163440692 + AT_rich Low_complexity Low_complexity 1 43 0 2159 84 4 4 chr1 79224533 79224808 -163439545 + AluSx SINE Alu 23 297 -15 1959 125 4 4 chr1 79225162 79225468 -163438885 - AluSg SINE Alu 0 306 1 2324 79 0 0 chr1 79229767 79230106 -163434247 + AluSc SINE Alu 1 339 0 521 276 114 9 chr1 79230502 79230712 -163433641 - MIR SINE MIR -27 235 4 333 397 5 14 chr1 79230712 79230925 -163433428 - L3 LINE CR1 -85 1492 1282 303 371 10 0 chr1 79230985 79231082 -163433271 - L2 LINE L2 -23 3290 3193 277 173 240 0 chr1 79231348 79231423 -163432930 + MIR SINE MIR 81 173 -89 1970 168 3 0 chr1 79231465 79231763 -163432590 + AluSx SINE Alu 2 300 -12 741 256 33 11 chr1 79231832 79232052 -163432301 - MIR SINE MIR -3 259 37 275 375 71 38 chr1 79232114 79232298 -163432055 + L2 LINE L2 2440 2629 -685 914 123 39 0 chr1 79232375 79232505 -163431848 + AluJb SINE Alu 1 135 -177 1839 152 10 3 chr1 79232505 79232801 -163431552 + AluSx SINE Alu 1 298 -14 257 258 0 0 chr1 79232816 79232878 -163431475 + (TA)n Simple_repeat Simple_repeat 1 62 0 1843 242 99 11 chr1 79232878 79233486 -163430867 - HAL1 LINE L1 -354 2153 1493 565 305 64 5 chr1 79233490 79233677 -163430676 - MIR SINE MIR -19 243 46 216 0 0 0 chr1 79234567 79234591 -163429762 + (T)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr1 79234926 79234946 -163429407 + (GA)n Simple_repeat Simple_repeat 1 20 0 454 125 0 0 chr1 79235899 79235963 -163428390 + Alu SINE Alu 235 298 -14 2064 80 7 18 chr1 79236002 79236288 -163428065 + L1PA7 LINE L1 5872 6154 0 2423 165 0 14 chr1 79236929 79237299 -163427054 - MLT1A1 LTR MaLR 0 365 1 201 195 0 0 chr1 79237337 79237378 -163426975 + MIR SINE MIR 84 124 -138 224 300 57 0 chr1 79237891 79237961 -163426392 - L2 LINE L2 -1 3312 3239 1753 311 48 31 chr1 79238058 79239275 -163425078 + L2 LINE L2 2081 3311 -2 1452 175 52 26 chr1 79239327 79239635 -163424718 + MLT1D LTR MaLR 1 316 -189 254 299 91 56 chr1 79239788 79239985 -163424368 + L2 LINE L2 2829 3032 -240 724 325 110 15 chr1 79239994 79240573 -163423780 - L2 LINE L2 -2 3311 2652 288 0 0 0 chr1 79240573 79240605 -163423748 + (CA)n Simple_repeat Simple_repeat 2 33 0 724 325 110 15 chr1 79240605 79240727 -163423626 - L2 LINE L2 -661 2652 2543 205 300 70 20 chr1 79240796 79240896 -163423457 + L2 LINE L2 3116 3220 -93 1171 201 48 4 chr1 79241069 79241509 -163422844 + MER34 LTR ERV1 27 542 0 198 289 20 105 chr1 79242518 79242670 -163421683 + MIR SINE MIR 124 262 0 346 293 113 38 chr1 79243065 79243176 -163421177 - MIR3 SINE MIR -36 172 71 204 40 0 0 chr1 79243176 79243201 -163421152 + (TC)n Simple_repeat Simple_repeat 2 26 0 2041 110 11 14 chr1 79243201 79243482 -163420871 - AluSx SINE Alu -32 280 1 346 293 113 38 chr1 79243482 79243502 -163420851 - MIR3 SINE MIR -136 72 30 231 220 0 0 chr1 79243606 79243656 -163420697 - MIR SINE MIR -13 249 200 310 325 0 0 chr1 79244280 79244397 -163419956 + T-rich Low_complexity Low_complexity 1 117 0 647 220 102 72 chr1 79245869 79246002 -163418351 + MIR SINE MIR 20 164 -98 2308 102 7 0 chr1 79246002 79246306 -163418047 + AluSc SINE Alu 1 306 -3 647 220 102 72 chr1 79246306 79246408 -163417945 + MIR SINE MIR 164 262 0 180 0 0 0 chr1 79246717 79246737 -163417616 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 2232 104 0 28 chr1 79246815 79247132 -163417221 - AluSq SINE Alu -5 308 1 255 239 177 18 chr1 79247734 79247847 -163416506 + MIR SINE MIR 122 252 -10 291 157 0 0 chr1 79247938 79247989 -163416364 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 2209 108 3 0 chr1 79247996 79248284 -163416069 - AluSx SINE Alu -21 291 3 247 303 67 0 chr1 79248442 79248531 -163415822 - MIR SINE MIR -120 142 48 204 40 0 0 chr1 79248903 79248928 -163415425 + (TA)n Simple_repeat Simple_repeat 1 25 0 201 163 12 75 chr1 79249226 79249306 -163415047 + G-rich Low_complexity Low_complexity 3 77 0 336 194 65 65 chr1 79249393 79249501 -163414852 + MIR SINE MIR 63 170 -92 416 266 212 11 chr1 79249713 79249897 -163414456 + Charlie7 DNA MER1_type 43 263 -2349 781 163 0 23 chr1 79249951 79250080 -163414273 - FLAM_C SINE Alu -14 129 4 376 228 31 83 chr1 79250089 79250282 -163414071 - HsTC2 DNA Tc2 -2 1896 1714 234 237 34 0 chr1 79250437 79250496 -163413857 - HsTC2 DNA Tc2 -1837 61 1 1269 226 181 34 chr1 79250548 79251140 -163413213 + Charlie7 DNA MER1_type 1440 2118 -494 264 297 0 0 chr1 79251236 79251299 -163413054 + (TA)n Simple_repeat Simple_repeat 2 67 -8 2413 90 0 0 chr1 79251299 79251599 -163412754 - AluSg SINE Alu -9 301 2 264 297 0 0 chr1 79251599 79251609 -163412744 + (TA)n Simple_repeat Simple_repeat 66 75 0 248 310 200 0 chr1 79252098 79252198 -163412155 + L2 LINE L2 3186 3305 -8 288 137 0 0 chr1 79252476 79252527 -163411826 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 2113 130 3 0 chr1 79253329 79253628 -163410725 + AluSx SINE Alu 1 300 -12 1414 91 5 35 chr1 79254887 79255086 -163409267 - AluSg/x SINE Alu -6 304 112 404 58 0 19 chr1 79255086 79255138 -163409215 - Alu SINE Alu -261 52 2 398 277 105 85 chr1 79255138 79255585 -163408768 - L1MC/D LINE L1 -1984 5893 5438 * 3072 258 72 19 chr1 79255584 79256795 -163407558 - L1MC/D LINE L1 -4339 2057 783 383 156 31 0 chr1 79256795 79256859 -163407494 + MER58B DNA MER1_type 276 341 0 861 323 27 39 chr1 79257112 79257572 -163406781 - L1ME3A LINE L1 -230 5940 5485 1787 189 58 80 chr1 79257572 79257623 -163406730 - MLT1D LTR MaLR -2 503 452 2337 61 7 0 chr1 79257623 79257935 -163406418 + AluY SINE Alu 1 314 0 1787 189 58 80 chr1 79257935 79258396 -163405957 - MLT1D LTR MaLR -53 452 1 861 323 27 39 chr1 79258396 79258421 -163405932 - L1ME3A LINE L1 -685 5485 5461 480 244 44 17 chr1 79258444 79258624 -163405729 + L1MC4a LINE L1 5265 5449 -2359 3109 192 28 28 chr1 79258632 79258663 -163405690 - L1MB8 LINE L1 -84 6094 6064 2219 111 3 0 chr1 79258663 79258960 -163405393 - AluSq SINE Alu -14 299 2 3109 192 28 28 chr1 79258960 79259604 -163404749 - L1MB8 LINE L1 -113 6065 5419 908 276 134 31 chr1 79259604 79260090 -163404263 + L1MC4a LINE L1 5438 5973 -1835 417 276 93 84 chr1 79260247 79260386 -163403967 - L1MB8 LINE L1 -1674 4472 4336 1948 154 7 7 chr1 79260386 79260691 -163403662 - AluJo SINE Alu -7 305 1 417 276 93 84 chr1 79260691 79260884 -163403469 - L1MB8 LINE L1 -1810 4336 4137 225 0 0 0 chr1 79261376 79261401 -163402952 + (T)n Simple_repeat Simple_repeat 1 25 0 2138 209 147 53 chr1 79261438 79262036 -163402317 - MLT1E1 LTR MaLR 0 654 1 472 117 39 0 chr1 79262508 79262585 -163401768 + MADE1 DNA Mariner 1 80 0 198 390 28 11 chr1 79263211 79263393 -163400960 - L2 LINE L2 -190 3082 2898 422 174 0 87 chr1 79263445 79263537 -163400816 + MER34 LTR ERV1 12 95 -447 2094 145 0 0 chr1 79263745 79264048 -163400305 + AluSx SINE Alu 1 303 -9 767 167 0 0 chr1 79264123 79264243 -163400110 + MER34 LTR ERV1 125 244 -298 180 0 0 0 chr1 79264245 79264265 -163400088 + (TA)n Simple_repeat Simple_repeat 2 21 0 15429 63 14 0 chr1 79264271 79266157 -163398196 - HERVL-A1 LTR ERVL -429 5225 3314 * 16222 72 10 1 chr1 79266142 79268178 -163396175 - HERVL-A1 LTR ERVL -3598 2056 1 2877 77 50 77 chr1 79268178 79268634 -163395719 - MLT2A1 LTR ERVL 0 444 1 420 273 83 32 chr1 79269399 79269796 -163394557 + L1ME LINE L1 817 1271 -4863 840 268 38 25 chr1 79269903 79270342 -163394011 + L1ME LINE L1 4882 5341 -806 2393 122 21 5 chr1 79270342 79270726 -163393627 + MLT1B LTR MaLR 1 390 0 840 268 38 25 chr1 79270726 79270870 -163393483 + L1ME LINE L1 5341 5482 -665 362 292 0 10 chr1 79270923 79271019 -163393334 - L2 LINE L2 -42 3230 3136 714 251 6 0 chr1 79271400 79271563 -163392790 + MER45A DNA AcHobo 1 164 -14 186 43 0 0 chr1 79271590 79271613 -163392740 + (CTA)n Simple_repeat Simple_repeat 2 24 0 251 270 16 175 chr1 79271649 79271780 -163392573 + MER5A DNA MER1_type 25 119 -70 1840 140 0 0 chr1 79271780 79272044 -163392309 - AluSx SINE Alu -20 292 29 251 270 16 175 chr1 79272044 79272101 -163392252 + MER5A DNA MER1_type 119 183 -6 420 322 117 24 chr1 79272138 79272436 -163391917 + MLT1K LTR MaLR 114 439 -149 301 284 58 13 chr1 79272437 79272592 -163391761 + MER34 LTR ERV1 1 162 -380 1054 150 0 12 chr1 79272593 79272753 -163391600 + FRAM SINE Alu 1 157 -19 2509 75 0 3 chr1 79272759 79273219 -163391134 + L1PA8 LINE L1 5805 6263 0 505 258 62 31 chr1 79273375 79273569 -163390784 + MER34 LTR ERV1 282 481 -61 3233 147 15 43 chr1 79273572 79274179 -163390174 + LTR39 LTR ERV1 1 590 -193 850 156 0 15 chr1 79274204 79274339 -163390014 - AluJo SINE Alu -178 134 2 852 193 70 0 chr1 79274345 79274516 -163389837 + LTR39 LTR ERV1 601 783 0 2138 131 0 3 chr1 79274558 79274871 -163389482 + AluSx SINE Alu 1 312 0 271 217 0 58 chr1 79274932 79275001 -163389352 + MLT1K LTR MaLR 437 501 -87 328 353 22 7 chr1 79276230 79276369 -163387984 - MIR3 SINE MIR -57 151 11 614 251 20 98 chr1 79276374 79276481 -163387872 - L1MC4 LINE L1 -6 8036 7922 857 115 0 50 chr1 79276481 79276620 -163387733 - FLAM_C SINE Alu -1 132 1 614 251 20 98 chr1 79276620 79276951 -163387402 - L1MC4 LINE L1 -120 7922 7632 2394 61 7 0 chr1 79277027 79277322 -163387031 + AluY SINE Alu 1 297 -14 2109 125 0 3 chr1 79277729 79278017 -163386336 - AluSx SINE Alu -25 287 1 2013 145 3 0 chr1 79278972 79279269 -163385084 - AluSx SINE Alu -14 298 1 198 91 0 0 chr1 79279417 79279450 -163384903 + (T)n Simple_repeat Simple_repeat 1 33 0 9727 88 6 10 chr1 79279451 79281598 -163382755 - L1PA8 LINE L1 -1 6171 3991 493 268 53 0 chr1 79281839 79282025 -163382328 + MIR SINE MIR 16 210 -52 213 121 0 0 chr1 79282830 79282863 -163381490 + (T)n Simple_repeat Simple_repeat 1 33 0 226 231 46 56 chr1 79283186 79283294 -163381059 - MLT1K LTR MaLR -291 297 191 1577 187 42 70 chr1 79283383 79283784 -163380569 + MLT1B LTR MaLR 1 390 0 993 267 72 60 chr1 79283844 79284346 -163380007 - MLT1J LTR MaLR -3 508 1 2049 126 66 26 chr1 79284377 79284727 -163379626 - THE1B LTR MaLR 0 364 1 186 43 0 0 chr1 79284911 79284934 -163379419 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1765 149 27 37 chr1 79284944 79285239 -163379114 + AluJb SINE Alu 1 292 -20 1950 249 233 16 chr1 79285769 79286887 -163377466 - L2 LINE L2 0 3313 1967 1762 175 3 10 chr1 79287023 79287341 -163377012 + AluJo SINE Alu 1 312 0 888 152 0 0 chr1 79287956 79288081 -163376272 + AluJb SINE Alu 1 125 -187 189 304 31 108 chr1 79288384 79288432 -163375921 - MIR SINE MIR -7 255 205 1759 157 31 0 chr1 79288432 79288719 -163375634 - AluJb SINE Alu -5 307 12 189 304 31 108 chr1 79288719 79288864 -163375489 - MIR SINE MIR -57 205 77 2196 121 0 3 chr1 79288881 79289186 -163375167 - AluSx SINE Alu -8 304 1 259 146 0 0 chr1 79289255 79289296 -163375057 - MSTA LTR MaLR 0 426 386 2073 172 41 10 chr1 79289478 79289867 -163374486 - MSTA LTR MaLR -27 401 1 1172 122 61 14 chr1 79289906 79290120 -163374233 + LTR54 LTR ERV1 1 224 -286 652 136 0 0 chr1 79290120 79290223 -163374130 + LTR54 LTR ERV1 375 477 -33 766 185 0 15 chr1 79290240 79290375 -163373978 - FLAM_C SINE Alu -10 133 1 2340 102 0 0 chr1 79290387 79290682 -163373671 - AluSx SINE Alu -17 295 1 290 70 0 0 chr1 79290687 79290730 -163373623 + LTR54 LTR ERV1 468 510 0 336 264 159 28 chr1 79290888 79291070 -163373283 + L1MC4a LINE L1 5267 5472 -2336 722 198 8 0 chr1 79291136 79291262 -163373091 - FLAM_A SINE Alu -6 127 1 416 272 94 67 chr1 79291299 79291671 -163372682 + L1MC4a LINE L1 5615 5999 -171 1519 133 189 0 chr1 79293144 79293393 -163370960 - AluSx SINE Alu -16 296 1 1422 181 107 7 chr1 79293637 79293918 -163370435 + AluJb SINE Alu 3 311 -1 189 107 0 0 chr1 79293928 79293956 -163370397 + (CA)n Simple_repeat Simple_repeat 2 29 0 391 244 97 88 chr1 79294544 79294782 -163369571 + L2 LINE L2 3024 3263 -50 451 197 79 47 chr1 79295751 79295878 -163368475 + MER94 DNA DNA 3 133 -1 669 159 98 0 chr1 79296123 79296255 -163368098 - FRAM SINE Alu -15 161 17 279 260 94 61 chr1 79296418 79296599 -163367754 + MER117 DNA MER1_type 7 193 -4 2410 106 0 0 chr1 79297028 79297340 -163367013 - AluSq SINE Alu -1 312 1 185 194 81 48 chr1 79297527 79297589 -163366764 + MIR SINE MIR 83 146 -62 600 249 73 6 chr1 79297628 79297793 -163366560 + L1ME LINE L1 5518 5693 -473 2208 110 7 0 chr1 79299031 79299331 -163365022 + AluSx SINE Alu 11 312 0 1007 180 133 34 chr1 79299491 79299785 -163364568 + MLT1A1 LTR MaLR 1 323 -42 249 322 161 49 chr1 79300528 79300814 -163363539 + L2 LINE L2 288 605 -2709 2065 134 3 0 chr1 79301284 79301575 -163362778 + AluJo SINE Alu 1 292 -20 213 39 0 0 chr1 79302590 79302616 -163361737 + (TA)n Simple_repeat Simple_repeat 2 27 0 2034 153 0 0 chr1 79302654 79302942 -163361411 + AluSx SINE Alu 1 288 -24 2959 91 26 21 chr1 79303919 79304348 -163360005 + MER57B LTR ERV1 1 431 -3 4145 135 20 1 chr1 79304351 79305002 -163359351 + MER57B-int LTR ERV1 1 663 -6874 2373 143 55 0 chr1 79304996 79305396 -163358957 + MER57B-int LTR ERV1 1353 1774 -4172 * 3134 118 45 24 chr1 79305376 79305550 -163358803 + MER57B-int LTR ERV1 1408 1577 -6146 2468 83 0 0 chr1 79305550 79305852 -163358501 - AluY SINE Alu -9 302 1 3134 118 45 24 chr1 79305852 79306789 -163357564 + MER57B-int LTR ERV1 1577 4143 -3580 * 3958 133 48 17 chr1 79306787 79307877 -163356476 + MER57-int LTR ERV1 1853 5329 -2208 1942 149 0 3 chr1 79307900 79308285 -163356068 + L1PA7 LINE L1 5 560 -5901 * 28301 91 4 6 chr1 79308283 79309419 -163354934 + L1PA7 LINE L1 1344 2480 -3989 2326 98 3 0 chr1 79309419 79309716 -163354637 + AluSp SINE Alu 1 298 -15 28301 91 4 6 chr1 79309716 79313709 -163350644 + L1PA7 LINE L1 2480 6465 -4 11828 99 29 17 chr1 79313719 79315531 -163348822 + MER57-int LTR ERV1 5316 7149 -388 694 117 23 31 chr1 79315535 79315663 -163348690 + LTR54B LTR ERV1 5 131 -367 1667 48 121 0 chr1 79315663 79315894 -163348459 + MER57B-int LTR ERV1 7279 7537 0 3124 98 16 0 chr1 79315894 79316321 -163348032 + MER57B LTR ERV1 1 434 0 299 318 178 9 chr1 79316396 79316610 -163347743 + MIR SINE MIR 4 253 -9 21 0 0 0 chr1 79317385 79317406 -163346947 + AT_rich Low_complexity Low_complexity 1 21 0 1994 133 0 3 chr1 79317458 79317766 -163346587 + AluJb SINE Alu 1 307 0 31 0 0 0 chr1 79317806 79317837 -163346516 + AT_rich Low_complexity Low_complexity 1 31 0 271 235 0 0 chr1 79318003 79318054 -163346299 - L2 LINE L2 -5 3308 3258 563 244 37 74 chr1 79318313 79318498 -163345855 + MIR SINE MIR 2 181 -63 705 288 30 30 chr1 79318622 79318655 -163345698 + L2 LINE L2 3077 3109 -204 1845 164 30 3 chr1 79318655 79318953 -163345400 - AluJo SINE Alu -1 311 6 705 288 30 30 chr1 79318953 79319155 -163345198 + L2 LINE L2 3108 3312 -1 475 286 52 12 chr1 79319416 79319587 -163344766 + MIR SINE MIR 19 192 -66 2325 101 7 0 chr1 79319682 79319988 -163344365 + AluSx SINE Alu 1 308 -4 2234 126 3 0 chr1 79321330 79321639 -163342714 + AluSx SINE Alu 1 310 -2 2167 114 34 0 chr1 79322026 79322323 -163342030 + AluSg SINE Alu 1 307 -3 24 67 0 0 chr1 79322407 79322452 -163341901 + AT_rich Low_complexity Low_complexity 1 45 0 396 0 0 0 chr1 79323048 79323092 -163341261 + (CA)n Simple_repeat Simple_repeat 1 44 0 2163 124 72 39 chr1 79323598 79323645 -163340708 - THE1C LTR MaLR -1 374 330 1982 127 0 55 chr1 79323645 79323953 -163340400 - AluSx SINE Alu -19 293 3 2163 124 72 39 chr1 79323953 79324267 -163340086 - THE1C LTR MaLR -45 330 1 786 281 32 0 chr1 79324311 79324532 -163339821 - MIR SINE MIR -12 250 23 362 246 70 37 chr1 79324940 79324978 -163339375 - L1ME4a LINE L1 -199 5922 5887 2029 157 0 10 chr1 79324978 79325284 -163339069 - AluSx SINE Alu -9 303 1 362 246 70 37 chr1 79325284 79325432 -163338921 - L1ME4a LINE L1 -234 5887 5730 549 286 60 23 chr1 79325432 79325650 -163338703 + MIR SINE MIR 27 259 -3 628 247 37 6 chr1 79325651 79325813 -163338540 - L1ME4a LINE L1 -363 5758 5592 320 270 167 72 chr1 79326751 79327140 -163337213 + LTR67 LTR ERVL 130 555 -2 412 200 0 0 chr1 79327180 79327250 -163337103 + MLT1D LTR MaLR 1 70 -435 3727 221 45 26 chr1 79327250 79328049 -163336304 + MER21B LTR ERV1 1 814 -49 1829 206 117 0 chr1 79328096 79328490 -163335863 + MLT1D LTR MaLR 66 505 0 1492 174 34 48 chr1 79328524 79328818 -163335535 + AluJb SINE Alu 1 290 -22 461 93 27 0 chr1 79328818 79328893 -163335460 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 1292 32 0 32 chr1 79328893 79329079 -163335274 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4248 169 102 17 chr1 79330253 79331014 -163333339 + LTR1B LTR ERV1 1 826 0 1930 124 24 10 chr1 79331212 79331503 -163332850 + AluSx SINE Alu 1 295 -17 661 309 57 16 chr1 79331946 79332192 -163332161 + MIR SINE MIR 7 262 0 393 280 32 19 chr1 79332841 79332998 -163331355 + L2 LINE L2 3152 3310 -3 452 257 133 21 chr1 79333127 79333368 -163330985 + L1ME4a LINE L1 5673 5940 -181 2201 113 0 10 chr1 79333731 79334050 -163330303 - AluSx SINE Alu 0 312 1 297 170 0 0 chr1 79334181 79334228 -163330125 - tRNA-Lys-AAG tRNA tRNA -29 47 1 188 300 62 0 chr1 79334308 79334388 -163329965 + MIR SINE MIR 116 200 -62 2175 111 6 16 chr1 79334605 79334921 -163329432 + AluSq SINE Alu 1 313 0 810 179 0 21 chr1 79334988 79335133 -163329220 - FLAM_C SINE Alu -1 142 1 1997 143 0 0 chr1 79335694 79335980 -163328373 - AluSx SINE Alu -24 288 3 597 153 0 0 chr1 79336036 79336121 -163328232 - AluJ SINE Alu -47 265 181 625 155 0 0 chr1 79336123 79336220 -163328133 + AluJo/FRAM SINE Alu 142 238 -74 1143 160 21 16 chr1 79336241 79336435 -163327918 - AluJ SINE Alu -117 195 1 2048 155 0 0 chr1 79336631 79336934 -163327419 - AluSx SINE Alu -9 303 1 1601 174 7 24 chr1 79336943 79337236 -163327117 - AluJo SINE Alu -23 289 2 249 306 14 0 chr1 79337500 79337572 -163326781 - L2 LINE L2 -5 3308 3236 2190 114 0 3 chr1 79337646 79337936 -163326417 - AluSx SINE Alu -23 289 1 306 205 0 0 chr1 79337993 79338071 -163326282 + (TA)n Simple_repeat Simple_repeat 1 78 0 1727 159 19 36 chr1 79338071 79338379 -163325974 - AluJb SINE Alu -9 303 1 301 234 0 43 chr1 79338655 79338749 -163325604 - L1MC4 LINE L1 -1339 6703 6614 1479 176 24 24 chr1 79340270 79340566 -163323787 + MER58B DNA MER1_type 46 341 0 217 329 24 24 chr1 79340761 79340843 -163323510 - L2 LINE L2 -87 3185 3104 370 343 154 3 chr1 79340896 79341266 -163323087 - L2 LINE L2 -953 2361 1936 330 246 173 70 chr1 79341366 79341638 -163322715 + MLT1H LTR MaLR 7 306 -243 257 186 43 29 chr1 79341720 79341790 -163322563 + MLT1H LTR MaLR 453 523 -19 4300 42 17 0 chr1 79341796 79342278 -163322075 - LTR2B LTR ERV1 0 490 1 317 296 31 0 chr1 79342546 79342644 -163321709 - MIR SINE MIR -59 203 103 830 211 23 12 chr1 79342822 79342993 -163321360 - FAM SINE Alu -2 173 1 1735 159 98 13 chr1 79343205 79343520 -163320833 - MER7A DNA MER2_type -1 345 6 434 270 37 74 chr1 79343682 79343861 -163320492 - MIR SINE MIR -2 260 76 2007 123 41 0 chr1 79343861 79344153 -163320200 + AluSg SINE Alu 1 304 -6 434 270 37 74 chr1 79344153 79344166 -163320187 - MIR SINE MIR -186 76 64 1849 144 6 35 chr1 79344166 79344478 -163319875 + AluJb SINE Alu 1 303 -9 434 270 37 74 chr1 79344478 79344554 -163319799 - MIR SINE MIR -198 64 1 292 349 23 16 chr1 79345005 79345134 -163319219 + MIR SINE MIR 74 203 -59 2071 130 7 7 chr1 79345383 79345684 -163318669 - AluSx SINE Alu -11 301 1 1533 147 29 73 chr1 79346250 79346563 -163317790 + AluJo SINE Alu 1 299 -13 1950 123 6 43 chr1 79347234 79347327 -163317026 + L1PA16 LINE L1 5855 5950 -216 2687 99 8 3 chr1 79347327 79347680 -163316673 - THE1A LTR MaLR 0 355 1 12455 92 10 2 chr1 79347680 79349248 -163315105 - THE1A-int LTR MaLR 0 1580 1 2871 85 6 0 chr1 79349248 79349601 -163314752 - THE1A LTR MaLR 0 355 1 1950 123 6 43 chr1 79349601 79349829 -163314524 + L1PA16 LINE L1 5947 6166 0 189 0 0 0 chr1 79350117 79350138 -163314215 + (A)n Simple_repeat Simple_repeat 1 21 0 1011 183 0 6 chr1 79350541 79350710 -163313643 + FRAM SINE Alu 1 162 -14 1863 121 14 14 chr1 79350710 79350990 -163313363 + AluSx SINE Alu 1 280 -32 903 101 19 13 chr1 79350990 79351149 -163313204 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 1950 135 0 42 chr1 79351942 79352253 -163312100 + AluSx SINE Alu 1 298 -14 2235 39 0 0 chr1 79352700 79352958 -163311395 + AluY SINE Alu 41 298 -13 315 213 0 0 chr1 79353496 79353571 -163310782 + GA-rich Low_complexity Low_complexity 1 75 0 451 272 183 0 chr1 79353678 79353858 -163310495 + MIR SINE MIR 37 249 -13 1139 175 0 15 chr1 79354148 79354354 -163309999 + AluJo SINE Alu 1 203 -109 252 306 113 0 chr1 79354366 79354490 -163309863 + MIR SINE MIR 77 214 -48 1418 149 22 115 chr1 79354493 79354816 -163309537 + AluYb8 SINE Alu 9 301 -17 187 163 0 47 chr1 79354816 79354859 -163309494 + MIR SINE MIR 219 259 -3 423 247 170 13 chr1 79354988 79355223 -163309130 + L1ME4a LINE L1 5626 5897 -224 405 317 54 16 chr1 79355391 79355577 -163308776 + L2 LINE L2 3104 3296 -17 355 187 43 122 chr1 79355577 79355598 -163308755 + L1ME4a LINE L1 5926 5947 -174 2203 96 7 20 chr1 79355598 79355900 -163308453 - AluSx SINE Alu -14 298 1 355 187 43 122 chr1 79355900 79356017 -163308336 + L1ME4a LINE L1 5947 6053 -68 2011 112 41 10 chr1 79356338 79356633 -163307720 + AluSx SINE Alu 1 304 -8 21 26 0 26 chr1 79356670 79356693 -163307660 + AT_rich Low_complexity Low_complexity 1 24 -14 2381 61 0 10 chr1 79356693 79356989 -163307364 + AluY SINE Alu 13 305 -6 21 26 0 26 chr1 79356989 79357004 -163307349 + AT_rich Low_complexity Low_complexity 24 38 0 822 179 0 0 chr1 79357011 79357128 -163307225 - FLAM_C SINE Alu -24 119 3 21 82 0 0 chr1 79357179 79357228 -163307125 + AT_rich Low_complexity Low_complexity 1 49 0 952 213 10 69 chr1 79357239 79357530 -163306823 + ORSL DNA AcHobo 2 275 0 1772 175 0 0 chr1 79358074 79358360 -163305993 - AluJb SINE Alu -26 286 1 867 156 68 51 chr1 79358773 79359051 -163305302 + MSTB LTR MaLR 1 273 -153 297 0 0 0 chr1 79359051 79359084 -163305269 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1711 162 33 0 chr1 79359089 79359360 -163304993 - AluJb SINE Alu -32 280 1 867 156 68 51 chr1 79359360 79359400 -163304953 + MSTB LTR MaLR 276 426 0 1526 166 53 43 chr1 79360459 79360761 -163303592 - AluJo SINE Alu -7 305 1 429 221 11 11 chr1 79360784 79360879 -163303474 - U6 snRNA snRNA -6 101 7 24 0 0 0 chr1 79361208 79361232 -163303121 + AT_rich Low_complexity Low_complexity 1 24 0 528 247 26 58 chr1 79361428 79361582 -163302771 + MIR SINE MIR 4 152 -110 1942 139 24 10 chr1 79361690 79361984 -163302369 + AluSx SINE Alu 1 298 -14 4010 180 109 41 chr1 79362530 79363337 -163301016 + MER21B LTR ERV1 1 862 -1 1413 267 171 28 chr1 79363560 79364582 -163299771 - L2 LINE L2 -2 3311 2141 319 250 44 37 chr1 79364582 79364718 -163299635 + MER65A LTR ERV1 1 137 -308 2899 263 91 18 chr1 79365069 79366010 -163298343 - L2 LINE L2 -1177 2137 1128 186 213 0 21 chr1 79366425 79366472 -163297881 - L2 LINE L2 -5 3308 3263 1577 131 83 48 chr1 79367070 79367360 -163296993 - AluJb SINE Alu -12 300 1 24 0 0 0 chr1 79367636 79367660 -163296693 + AT_rich Low_complexity Low_complexity 1 24 0 510 261 0 8 chr1 79367737 79367856 -163296497 - L2 LINE L2 -6 3307 3190 28 86 0 0 chr1 79367939 79368009 -163296344 + AT_rich Low_complexity Low_complexity 1 70 0 1854 208 52 0 chr1 79368080 79368427 -163295926 + MLT1A1 LTR MaLR 1 365 0 394 191 79 22 chr1 79368506 79368595 -163295758 - MIR SINE MIR -103 159 66 320 259 51 18 chr1 79368718 79368858 -163295495 + MLT1J LTR MaLR 228 477 -138 2172 107 47 0 chr1 79368941 79369239 -163295114 - AluSx SINE Alu 0 312 1 3293 174 65 12 chr1 79369746 79370102 -163294251 + L1MB8 LINE L1 5453 5788 -390 1859 112 4 11 chr1 79370102 79370362 -163293991 + AluSx SINE Alu 1 258 -54 3293 174 65 12 chr1 79370362 79370693 -163293660 + L1MB8 LINE L1 5788 6177 -1 492 332 68 15 chr1 79370970 79371175 -163293178 + MIR SINE MIR 34 249 -13 729 127 71 8 chr1 79371461 79371587 -163292766 + AluSg/x SINE Alu 175 308 -2 24 32 0 0 chr1 79371601 79371632 -163292721 + AT_rich Low_complexity Low_complexity 1 31 0 411 294 0 40 chr1 79371737 79371863 -163292490 + MIR SINE MIR 37 157 -105 1867 185 11 6 chr1 79371869 79372220 -163292133 - MLT1A1 LTR MaLR 0 365 13 349 264 11 11 chr1 79372235 79372326 -163292027 + MIR SINE MIR 162 252 -10 2114 115 0 3 chr1 79372403 79372759 -163291594 - AluSq SINE Alu 0 355 1 2347 96 0 3 chr1 79372768 79373071 -163291282 - AluSx SINE Alu -10 302 1 489 250 9 0 chr1 79373116 79373224 -163291129 - MER81 DNA DNA 0 114 6 2200 125 3 0 chr1 79373465 79373769 -163290584 - AluSx SINE Alu -7 305 1 40742 52 4 3 chr1 79374246 79380384 -163283969 + L1PA4 LINE L1 9 6152 -3 528 307 91 30 chr1 79380761 79381025 -163283328 + L2 LINE L2 1730 2009 -1305 1014 171 0 6 chr1 79381032 79381202 -163283151 + FRAM SINE Alu 1 168 -8 1806 186 46 0 chr1 79381317 79381688 -163282665 + L1MB3 LINE L1 5785 6172 -11 524 270 4 99 chr1 79381984 79382247 -163282106 + MLT1K LTR MaLR 208 445 -143 21 0 0 0 chr1 79382612 79382633 -163281720 + AT_rich Low_complexity Low_complexity 1 21 0 674 245 86 34 chr1 79382638 79382989 -163281364 + L1ME LINE L1 5417 5785 -336 242 345 86 0 chr1 79384017 79384133 -163280220 + L2 LINE L2 3143 3268 -4 1425 160 96 56 chr1 79385210 79385744 -163278609 + LTR54B LTR ERV1 1 510 0 23 0 0 0 chr1 79386557 79386580 -163277773 + AT_rich Low_complexity Low_complexity 1 23 0 320 171 147 38 chr1 79386803 79386909 -163277444 - MIR SINE MIR -62 146 35 352 245 0 10 chr1 79387074 79387176 -163277177 + Charlie8 DNA MER1_type 71 171 -2246 2098 85 74 0 chr1 79387862 79388145 -163276208 - AluSx SINE Alu -8 304 1 217 423 40 7 chr1 79388525 79388674 -163275679 + L3 LINE CR1 1377 1530 -47 293 68 23 0 chr1 79389038 79389082 -163275271 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 844 201 0 7 chr1 79389290 79389444 -163274909 - FRAM SINE Alu -12 154 2 1333 155 127 8 chr1 79389657 79389902 -163274451 + AluSg1 SINE Alu 6 279 -30 3658 182 42 63 chr1 79390907 79391798 -163272555 - L1MA9 LINE L1 -1 6311 5442 1856 177 0 3 chr1 79391798 79392097 -163272256 - AluJb SINE Alu -14 298 1 3658 182 42 63 chr1 79392097 79392207 -163272146 - L1MA9 LINE L1 -870 5442 5331 349 175 0 0 chr1 79392209 79392266 -163272087 + Tigger3(Golem) DNA MER2_type 2981 3037 0 465 19 0 0 chr1 79392337 79392391 -163271962 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2030 104 14 11 chr1 79392393 79392672 -163271681 - AluSx SINE Alu -32 280 1 1033 105 0 0 chr1 79392676 79392809 -163271544 - AluSq/x SINE Alu -179 133 1 1143 190 52 3 chr1 79392827 79393112 -163271241 - L1MA9 LINE L1 -837 5309 5039 2274 149 16 5 chr1 79393116 79393498 -163270855 - MSTB LTR MaLR 0 426 41 2228 135 0 0 chr1 79393524 79393836 -163270517 - AluSx SINE Alu 0 312 1 834 255 158 9 chr1 79394095 79394436 -163269917 + Charlie2a DNA MER1_type 79 470 -2312 1969 75 3 78 chr1 79394545 79394839 -163269514 - AluY SINE Alu -39 272 1 559 183 59 24 chr1 79394873 79395042 -163269311 + Charlie2a DNA MER1_type 808 982 -1880 2141 120 3 0 chr1 79395097 79395398 -163268955 + AluSc SINE Alu 1 302 -7 229 221 47 35 chr1 79395414 79395500 -163268853 + Charlie2a DNA MER1_type 2776 2862 0 245 256 51 0 chr1 79395540 79395618 -163268735 + L1ME4a LINE L1 5975 6056 -65 1049 164 0 28 chr1 79396171 79396348 -163268005 + FRAM SINE Alu 1 170 -6 850 136 0 0 chr1 79396869 79396987 -163267366 + AluJb SINE Alu 1 118 -194 40 0 0 0 chr1 79396987 79397027 -163267326 + AT_rich Low_complexity Low_complexity 1 40 0 585 188 36 0 chr1 79397288 79397400 -163266953 - FAM SINE Alu -62 123 8 1281 146 31 75 chr1 79397456 79397750 -163266603 - MSTA LTR MaLR 0 428 148 455 126 328 0 chr1 79398161 79398280 -163266073 - MSTA LTR MaLR -270 158 1 2512 177 52 4 chr1 79398295 79398759 -163265594 + MER66B LTR ERV1 1 486 0 2132 121 0 0 chr1 79398789 79399086 -163265267 - AluSx SINE Alu -13 299 3 926 287 132 36 chr1 79399086 79399761 -163264592 - L2 LINE L2 -8 3305 2327 27057 127 14 24 chr1 79399771 79402954 -163261399 + L1PA8A LINE L1 10 3130 -3316 2400 73 0 10 chr1 79402954 79403257 -163261096 + AluY SINE Alu 1 300 -11 27057 127 14 24 chr1 79403257 79406230 -163258123 + L1PA8A LINE L1 3130 6131 -315 562 207 59 22 chr1 79406232 79406352 -163258001 + L2 LINE L2 2213 2327 -987 386 56 0 0 chr1 79406352 79406406 -163257947 - L1PA8 LINE L1 0 6172 6119 2765 84 0 0 chr1 79406406 79406769 -163257584 + L1PA8 LINE L1 5805 6172 0 562 207 59 22 chr1 79406769 79406782 -163257571 + L2 LINE L2 2326 2352 -962 * 863 252 42 34 chr1 79406772 79407010 -163257343 - L2 LINE L2 -975 2339 2100 258 315 45 36 chr1 79407424 79407535 -163256818 - L2 LINE L2 -5 3308 3197 5313 102 30 7 chr1 79408395 79409157 -163255196 + LTR17 LTR ERV1 1 780 0 2134 93 10 17 chr1 79409306 79409606 -163254747 - AluSx SINE Alu -14 298 1 309 284 90 99 chr1 79409643 79410189 -163254164 - MLT1K LTR MaLR 0 588 48 888 243 73 46 chr1 79410814 79411261 -163253092 - MLT1G1 LTR MaLR -87 468 1 191 305 85 24 chr1 79411365 79411447 -163252906 - L2 LINE L2 0 3313 3227 2043 108 0 7 chr1 79411672 79411950 -163252403 - AluSq SINE Alu -27 286 11 572 367 35 6 chr1 79412011 79412330 -163252023 - L2 LINE L2 -906 2408 2081 27 29 0 0 chr1 79412978 79413012 -163251341 + AT_rich Low_complexity Low_complexity 1 34 0 180 77 0 0 chr1 79413146 79413172 -163251181 + (CA)n Simple_repeat Simple_repeat 1 26 0 1174 262 62 42 chr1 79413290 79413695 -163250658 + LTR16C LTR ERVL 79 491 0 366 267 30 0 chr1 79413998 79414099 -163250254 + MIR SINE MIR 96 199 -63 2215 124 0 7 chr1 79414155 79414461 -163249892 + AluSq SINE Alu 1 304 -9 37 23 0 0 chr1 79414722 79414766 -163249587 + AT_rich Low_complexity Low_complexity 1 44 0 2995 109 25 2 chr1 79414795 79415271 -163249082 + LTR15 LTR ERV1 1 487 -6 1520 184 8 4 chr1 79415277 79415544 -163248809 - AluJo SINE Alu -42 270 3 302 240 134 53 chr1 79415728 79416011 -163248342 - L1ME4a LINE L1 -43 6078 5773 427 319 15 7 chr1 79416029 79416164 -163248189 + MIR SINE MIR 11 146 -116 343 288 80 9 chr1 79416260 79416472 -163247881 - L1ME4a LINE L1 -385 5736 5510 2433 120 22 71 chr1 79416835 79417183 -163247170 - MSTC LTR MaLR 0 428 105 517 244 17 0 chr1 79417183 79417298 -163247055 + FLAM_A SINE Alu 1 117 -16 2433 120 22 71 chr1 79417298 79417399 -163246954 - MSTC LTR MaLR -323 105 1 220 246 79 79 chr1 79417633 79417759 -163246594 - MIR SINE MIR -4 258 133 320 300 88 18 chr1 79417817 79417987 -163246366 - MLT1K LTR MaLR -32 556 375 295 299 26 8 chr1 79418095 79418212 -163246141 - MLT1K LTR MaLR -339 249 131 379 258 24 60 chr1 79418539 79418706 -163245647 - L2 LINE L2 -1262 2052 1892 542 237 53 20 chr1 79419253 79419405 -163244948 + MER77 LTR ERV1 56 212 -393 1112 260 67 41 chr1 79419429 79419864 -163244489 + MER77 LTR ERV1 154 599 -6 1648 155 0 40 chr1 79420679 79420957 -163243396 + AluJo SINE Alu 1 267 -45 189 0 0 0 chr1 79421095 79421116 -163243237 + (T)n Simple_repeat Simple_repeat 1 21 0 2187 76 10 16 chr1 79422720 79423023 -163241330 + AluSx SINE Alu 1 301 -11 1895 194 16 8 chr1 79423098 79423485 -163240868 - MLT1B LTR MaLR 0 390 1 2017 122 7 14 chr1 79424489 79424784 -163239569 - AluSx SINE Alu -18 294 2 451 152 0 25 chr1 79424799 79424878 -163239475 + FRAM/FAM SINE Alu 1 76 -100 2163 90 18 0 chr1 79424962 79425239 -163239114 + AluSg SINE Alu 23 304 -6 1916 121 22 63 chr1 79425588 79425903 -163238450 - AluSx SINE Alu -10 302 1 225 174 22 0 chr1 79426114 79426160 -163238193 - ORSL DNA AcHobo 0 275 229 204 179 0 0 chr1 79426459 79426498 -163237855 + (TG)n Simple_repeat Simple_repeat 2 40 0 1881 181 81 14 chr1 79427012 79427444 -163236909 - MER65C LTR ERV1 0 461 1 1506 206 0 40 chr1 79427547 79427848 -163236505 - AluJo SINE Alu -22 290 2 2165 118 10 7 chr1 79428304 79428601 -163235752 - AluSx SINE Alu -14 298 1 459 0 0 0 chr1 79428618 79428669 -163235684 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 286 312 104 8 chr1 79428689 79428814 -163235539 + MIR3 SINE MIR 48 184 -24 2231 113 0 0 chr1 79429088 79429372 -163234981 + AluSx SINE Alu 1 284 -28 29 0 0 0 chr1 79429410 79429439 -163234914 + AT_rich Low_complexity Low_complexity 1 29 0 496 167 22 0 chr1 79430123 79430213 -163234140 - L1MC/D LINE L1 -645 5714 5623 636 242 54 14 chr1 79430280 79430503 -163233850 - L1MEc LINE L1 -6129 267 36 310 342 8 17 chr1 79430503 79430620 -163233733 - L1MEd LINE L1 -5024 1095 980 305 219 0 16 chr1 79430837 79430901 -163233452 - MIR3 SINE MIR -21 187 125 1795 177 3 3 chr1 79431308 79431602 -163232751 - AluJb SINE Alu -13 299 6 25 31 0 0 chr1 79431740 79431772 -163232581 + AT_rich Low_complexity Low_complexity 1 32 0 430 225 34 22 chr1 79432236 79432325 -163232028 + MIR SINE MIR 4 93 -169 2070 117 0 21 chr1 79432404 79432715 -163231638 + AluSx SINE Alu 1 305 0 595 261 22 0 chr1 79432879 79433013 -163231340 - MIR SINE MIR -122 140 4 229 262 11 134 chr1 79433023 79433210 -163231143 - L2 LINE L2 -850 2464 2301 479 179 0 0 chr1 79433220 79433304 -163231049 + LTR40b LTR ERVL 379 462 0 27 0 0 0 chr1 79433520 79433547 -163230806 + AT_rich Low_complexity Low_complexity 1 27 0 2268 97 10 13 chr1 79433790 79434100 -163230253 - AluSx SINE Alu -3 309 1 2240 98 0 0 chr1 79434688 79434974 -163229379 + AluSq SINE Alu 3 288 -25 2417 184 69 33 chr1 79435257 79435833 -163228520 - MER63 DNA MER1_type 0 1061 465 1414 179 88 35 chr1 79436216 79436557 -163227796 - MLT1A1 LTR MaLR -4 361 3 2132 225 21 13 chr1 79436559 79437030 -163227323 - MLT1A1-int LTR MaLR 0 1735 1261 415 218 54 88 chr1 79437051 79437198 -163227155 - MLT1A1-int LTR MaLR -915 820 679 327 149 0 45 chr1 79437274 79437341 -163227012 - MLT1A1-int LTR MaLR -489 882 819 3094 204 18 3 chr1 79437395 79438047 -163226306 - MLT1A1-int LTR MaLR -1073 662 1 1394 192 29 83 chr1 79438047 79438433 -163225920 - MLT1A1 LTR MaLR 0 365 1 359 352 140 0 chr1 79439003 79439182 -163225171 - MIR SINE MIR -39 223 20 304 282 139 37 chr1 79439310 79439555 -163224798 + L1 LINE L1 4021 4290 -1856 2314 104 0 0 chr1 79439585 79439882 -163224471 - AluSx SINE Alu -15 297 1 905 264 76 63 chr1 79439889 79440272 -163224081 - L2 LINE L2 -7 3306 2919 1445 284 98 30 chr1 79440432 79441074 -163223279 - L2 LINE L2 -529 2785 2100 37 62 0 0 chr1 79441486 79441551 -163222802 + AT_rich Low_complexity Low_complexity 1 65 0 2255 85 3 3 chr1 79442051 79442344 -163222009 + AluSx SINE Alu 5 297 -15 205 337 50 10 chr1 79442486 79442587 -163221766 + L2 LINE L2 1713 1817 -1497 367 304 19 75 chr1 79442588 79442749 -163221604 - L1MEd LINE L1 -5373 746 595 360 289 153 73 chr1 79443264 79443358 -163220995 + L2 LINE L2 2690 2775 -538 2167 137 3 0 chr1 79443358 79443665 -163220688 + AluSp SINE Alu 1 308 -5 360 289 153 73 chr1 79443665 79443745 -163220608 + L2 LINE L2 2775 2847 -466 2181 128 0 0 chr1 79443745 79444041 -163220312 + AluSx SINE Alu 3 298 -14 360 289 153 73 chr1 79444041 79444294 -163220059 + L2 LINE L2 2847 3177 -136 1858 148 10 23 chr1 79444294 79444597 -163219756 - AluJb SINE Alu -7 305 7 360 289 153 73 chr1 79444597 79444709 -163219644 + L2 LINE L2 3177 3279 -34 413 289 91 29 chr1 79444718 79444960 -163219393 - MIR SINE MIR -3 259 3 25 0 0 0 chr1 79445753 79445778 -163218575 + AT_rich Low_complexity Low_complexity 1 25 0 35 24 0 0 chr1 79446069 79446111 -163218242 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr1 79446172 79446201 -163218152 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr1 79446349 79446382 -163217971 + AT_rich Low_complexity Low_complexity 1 33 0 316 247 47 53 chr1 79446451 79446601 -163217752 - HAL1 LINE L1 -83 2424 2276 25 0 0 0 chr1 79446956 79446981 -163217372 + AT_rich Low_complexity Low_complexity 1 25 0 443 201 250 16 chr1 79447225 79447409 -163216944 - MIR SINE MIR 0 262 36 2540 45 7 3 chr1 79447666 79447976 -163216377 - AluY SINE Alu 0 311 1 1800 82 61 14 chr1 79447976 79448269 -163216084 - L1P5 LINE L1 -544 5607 5301 1695 132 16 0 chr1 79448271 79448514 -163215839 - AluSx SINE Alu -6 306 60 2051 171 25 0 chr1 79448537 79448893 -163215460 + MLT1A1 LTR MaLR 1 365 0 1871 83 0 4 chr1 79449176 79449416 -163214937 - AluSp SINE Alu -74 239 1 1279 262 58 25 chr1 79449421 79450025 -163214328 - L1ME LINE L1 -3930 2331 1708 2096 241 88 84 chr1 79450045 79450348 -163214005 - L1ME LINE L1 -4998 1085 785 1988 132 3 39 chr1 79450348 79450658 -163213695 - AluSx SINE Alu -13 299 1 2096 241 88 84 chr1 79450658 79451335 -163213018 - L1ME LINE L1 -5298 785 98 366 115 0 0 chr1 79451335 79451396 -163212957 + (TG)n Simple_repeat Simple_repeat 2 62 0 2096 241 88 84 chr1 79451396 79451470 -163212883 - L1ME LINE L1 -5985 98 26 2186 122 3 0 chr1 79451674 79451978 -163212375 - AluSx SINE Alu -7 305 1 448 272 18 18 chr1 79454082 79454251 -163210102 - MLT1L LTR MaLR -6 609 441 378 0 0 0 chr1 79454673 79454715 -163209638 + (CA)n Simple_repeat Simple_repeat 2 43 0 379 266 0 9 chr1 79454825 79454938 -163209415 + MER112 DNA MER1_type 141 252 -8 324 316 59 40 chr1 79454939 79455091 -163209262 - MLT1L LTR MaLR -460 155 1 351 0 0 0 chr1 79455534 79455573 -163208780 + (CA)n Simple_repeat Simple_repeat 1 39 0 576 224 36 30 chr1 79456839 79457004 -163207349 + L1ME1 LINE L1 6001 6166 0 2109 120 14 0 chr1 79457234 79457525 -163206828 - AluSq SINE Alu -18 295 1 234 301 32 16 chr1 79457611 79457734 -163206619 - HAL1 LINE L1 -854 1636 1512 510 315 121 56 chr1 79457795 79458263 -163206090 - L1MEd LINE L1 -1046 1444 851 235 91 0 0 chr1 79458280 79458313 -163206040 - HsTC2 DNA Tc2 -1 1897 1865 2008 138 6 22 chr1 79458472 79458783 -163205570 - AluSx SINE Alu -5 307 2 1118 295 95 29 chr1 79459111 79459676 -163204677 + L2 LINE L2 2470 3062 -251 714 191 0 8 chr1 79459756 79459942 -163204411 - FLAM_A SINE Alu 0 188 4 308 259 0 0 chr1 79460543 79460601 -163203752 - L2 LINE L2 -5 3267 3210 636 242 0 0 chr1 79462089 79462209 -163202144 + FLAM_A SINE Alu 1 120 -13 660 316 98 28 chr1 79462251 79462681 -163201672 - LTR67 LTR ERVL -42 515 56 321 267 27 0 chr1 79462858 79462933 -163201420 - L2 LINE L2 -5 3308 3232 234 258 81 73 chr1 79465670 79465794 -163198559 + MIR SINE MIR 93 217 -45 1780 121 86 14 chr1 79465872 79466162 -163198191 - AluSx SINE Alu -1 311 1 773 236 94 38 chr1 79466798 79467205 -163197148 + MER57A LTR ERV1 1 403 0 182 356 27 0 chr1 79468244 79468317 -163196036 + L2 LINE L2 3169 3243 -29 2405 88 7 10 chr1 79468478 79468784 -163195569 + AluSx SINE Alu 7 311 -1 5433 112 2 9 chr1 79469099 79469884 -163194469 - LTR17 LTR ERV1 0 780 1 231 114 0 0 chr1 79470052 79470087 -163194266 + (CA)n Simple_repeat Simple_repeat 2 36 0 282 306 27 27 chr1 79470161 79470272 -163194081 - L3 LINE CR1 -63 1514 1404 289 302 47 19 chr1 79470453 79470559 -163193794 - LTR33 LTR ERVL -306 215 107 661 187 65 141 chr1 79470660 79471000 -163193353 - LTR37B LTR ERV1 -2 466 111 265 254 60 15 chr1 79471009 79471143 -163193210 - LTR37B LTR ERV1 -320 148 9 281 196 134 21 chr1 79471805 79471902 -163192451 + MER3 DNA MER1_type 7 114 -95 680 152 15 38 chr1 79471969 79472101 -163192252 + AluJ SINE Alu 1 129 -173 36481 29 29 3 chr1 79472107 79478131 -163186222 + L1HS LINE L1 3 6145 -10 279 0 0 0 chr1 79478131 79478162 -163186191 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 717 193 12 56 chr1 79478165 79478348 -163186005 + AluJ SINE Alu 129 304 0 250 352 55 16 chr1 79478735 79478863 -163185490 + MIR SINE MIR 19 151 -57 303 337 20 0 chr1 79478957 79479055 -163185298 - L2 LINE L2 -11 3302 3203 215 186 0 17 chr1 79479969 79480028 -163184325 + CT-rich Low_complexity Low_complexity 4 61 0 400 287 28 9 chr1 79480045 79480153 -163184200 - L2 LINE L2 0 3313 3204 3209 264 80 17 chr1 79480163 79480971 -163183382 + MER69B DNA AcHobo 20 923 -1603 1889 126 0 44 chr1 79480971 79481296 -163183057 + AluSx SINE Alu 1 312 0 3209 264 80 17 chr1 79481296 79481620 -163182733 + MER69B DNA AcHobo 923 1225 -1 365 260 113 7 chr1 79481621 79481771 -163182582 - L2 LINE L2 -102 3211 3046 1976 191 47 0 chr1 79481793 79482201 -163182152 - L1MD3 LINE L1 -174 7821 7395 419 159 23 23 chr1 79482222 79482310 -163182043 - MLT1F1 LTR MaLR -464 103 16 1039 199 34 7 chr1 79482310 79482683 -163181670 - L1ME LINE L1 -704 5462 5084 1000 313 47 45 chr1 79482693 79483328 -163181025 + L1MB1 LINE L1 416 1090 -5213 288 324 16 71 chr1 79483390 79483572 -163180781 + L1MB1 LINE L1 932 1103 -5200 1768 265 95 18 chr1 79483704 79484255 -163180098 + L1MB1 LINE L1 914 1421 -4898 189 0 0 0 chr1 79484255 79484276 -163180077 + (GA)n Simple_repeat Simple_repeat 1 21 0 1768 265 95 18 chr1 79484276 79484396 -163179957 + L1MB1 LINE L1 1421 1530 -4789 2909 114 2 9 chr1 79484396 79484833 -163179520 + MER57B LTR ERV1 1 434 0 1768 265 95 18 chr1 79484833 79485063 -163179290 + L1MB1 LINE L1 1530 1678 -4641 732 196 5 103 chr1 79485063 79485257 -163179096 + FAM SINE Alu 1 175 0 1768 265 95 18 chr1 79485257 79485394 -163178959 + L1MB1 LINE L1 1678 1803 -4516 1437 202 40 65 chr1 79485514 79485869 -163178484 + L1MB1 LINE L1 2030 2392 -3990 1678 151 12 0 chr1 79485869 79486121 -163178232 - AluSq SINE Alu -30 283 29 1437 202 40 65 chr1 79486121 79486616 -163177737 + L1MB1 LINE L1 2392 2859 -3523 3335 168 42 23 chr1 79486616 79487043 -163177310 + L1MB1 LINE L1 5278 5695 -709 2231 125 0 3 chr1 79487043 79487354 -163176999 + AluY SINE Alu 1 310 -1 3335 168 42 23 chr1 79487354 79487831 -163176522 + L1MB1 LINE L1 5695 6209 -195 2588 98 10 44 chr1 79487831 79488030 -163176323 - THE1C LTR MaLR 0 375 194 2552 84 0 0 chr1 79488030 79488341 -163176012 + AluY SINE Alu 1 311 0 2588 98 10 44 chr1 79488341 79488529 -163175824 - THE1C LTR MaLR -181 194 1 10104 108 46 14 chr1 79488529 79490061 -163174292 - THE1C-int LTR MaLR 0 1580 1 2533 106 13 21 chr1 79490061 79490439 -163173914 - THE1C LTR MaLR 0 375 1 2165 224 32 2 chr1 79490475 79491068 -163173285 - L1M4 LINE L1 -1072 5074 4464 458 242 5 162 chr1 79491069 79491267 -163173086 - L2 LINE L2 -264 3049 2883 263 240 150 10 chr1 79491283 79491383 -163172970 + LTR50 LTR ERVL 216 329 -466 1657 244 70 18 chr1 79491452 79491952 -163172401 - L2 LINE L2 -413 2901 2376 33 0 0 0 chr1 79492001 79492034 -163172319 + AT_rich Low_complexity Low_complexity 1 33 0 225 333 68 56 chr1 79492227 79492461 -163171892 - L2 LINE L2 -211 3061 2825 2006 147 3 0 chr1 79492488 79492781 -163171572 - AluSg SINE Alu -16 294 1 1768 212 130 63 chr1 79493010 79493755 -163170598 + LTR50 LTR ERVL 1 795 0 1976 328 40 27 chr1 79494425 79495586 -163168767 + ERVL LTR ERVL 895 2070 -3694 1666 193 19 0 chr1 79495587 79495898 -163168455 - MLT1A1 LTR MaLR -1 364 48 1699 228 13 51 chr1 79495902 79496432 -163167921 + MER65B LTR ERV1 1 510 -21 257 130 0 22 chr1 79496446 79496492 -163167861 - MLT1A1 LTR MaLR -318 47 3 1811 280 57 47 chr1 79496498 79497242 -163167111 + ERVL LTR ERVL 2071 2821 -2943 1353 279 70 32 chr1 79497267 79497852 -163166501 - L2 LINE L2 -878 2436 1830 219 339 80 22 chr1 79498219 79498443 -163165910 + MIR SINE MIR 13 249 -13 310 234 95 58 chr1 79499508 79499833 -163164520 + L1MC/D LINE L1 5520 5652 -469 968 147 0 6 chr1 79499884 79500040 -163164313 - MIR SINE MIR -44 218 64 181 362 17 0 chr1 79500316 79500374 -163163979 - L2 LINE L2 -93 3179 3121 1217 172 56 43 chr1 79500386 79500737 -163163616 + MLT1A1 LTR MaLR 1 421 -7 2107 166 2 13 chr1 79501153 79501550 -163162803 + L1MB3 LINE L1 5782 6174 -9 1726 164 31 3 chr1 79501550 79501837 -163162516 - AluJo SINE Alu -15 297 3 203 171 0 0 chr1 79501844 79501885 -163162468 + A-rich Low_complexity Low_complexity 2 42 0 250 185 15 0 chr1 79503216 79503281 -163161072 + (CGG)n Simple_repeat Simple_repeat 2 67 0 667 284 83 10 chr1 79507485 79507689 -163156664 - MIR SINE MIR -19 243 25 2451 70 0 0 chr1 79507711 79508010 -163156343 - AluY SINE Alu -12 299 1 605 226 111 6 chr1 79511153 79511334 -163153019 + MER3 DNA MER1_type 1 200 -9 274 114 0 0 chr1 79512145 79512189 -163152164 - MER41A LTR ERV1 -111 443 400 483 266 100 23 chr1 79512329 79512630 -163151723 - L1ME4a LINE L1 -11 6110 5787 2068 136 10 0 chr1 79512674 79512969 -163151384 - AluSx SINE Alu -14 298 1 1025 162 0 23 chr1 79513458 79513631 -163150722 - AluJo/FRAM SINE Alu -10 302 134 1810 151 0 39 chr1 79513631 79513808 -163150545 - AluJb SINE Alu -12 300 139 2222 97 13 7 chr1 79513808 79514107 -163150246 - AluSx SINE Alu -11 301 1 1810 151 0 39 chr1 79514107 79514241 -163150112 - AluJb SINE Alu -173 139 1 225 65 0 0 chr1 79514354 79514385 -163149968 + (TG)n Simple_repeat Simple_repeat 2 32 0 629 312 107 5 chr1 79515863 79516078 -163148275 - MIR SINE MIR -6 256 20 242 322 39 72 chr1 79516220 79516400 -163147953 - L2 LINE L2 -288 3025 2852 363 236 0 0 chr1 79516505 79516577 -163147776 - MIR3 SINE MIR -28 180 109 1858 148 20 14 chr1 79516730 79517027 -163147326 + AluJb SINE Alu 1 299 -13 270 341 52 30 chr1 79517037 79517172 -163147181 + MIR3 SINE MIR 8 145 -63 457 243 157 25 chr1 79517365 79517493 -163146860 + L1MC4a LINE L1 5824 5934 -1874 261 83 0 0 chr1 79517493 79517529 -163146824 + (CA)n Simple_repeat Simple_repeat 1 36 0 457 243 157 25 chr1 79517529 79517680 -163146673 + L1MC4a LINE L1 5934 6140 -1668 246 32 0 0 chr1 79518157 79518188 -163146165 + (TG)n Simple_repeat Simple_repeat 2 32 0 238 351 0 0 chr1 79518843 79518917 -163145436 + MIR3 SINE MIR 95 168 -40 471 303 20 0 chr1 79519450 79519602 -163144751 - MER117 DNA MER1_type -42 155 1 33 25 0 0 chr1 79519708 79519748 -163144605 + AT_rich Low_complexity Low_complexity 1 40 0 13854 149 40 39 chr1 79519774 79521859 -163142494 + L1MA2 LINE L1 3095 5176 -2547 221 83 28 0 chr1 79521859 79521895 -163142458 + (CA)n Simple_repeat Simple_repeat 2 38 0 13854 149 40 39 chr1 79521895 79524337 -163140016 + L1MA2 LINE L1 5176 7632 -91 2256 104 0 0 chr1 79524337 79524624 -163139729 - AluSp SINE Alu -26 287 1 13854 149 40 39 chr1 79524624 79524700 -163139653 + L1MA2 LINE L1 7632 7706 -17 27 49 0 0 chr1 79524700 79524741 -163139612 + AT_rich Low_complexity Low_complexity 1 41 0 226 319 104 14 chr1 79525252 79525396 -163138957 - MIR SINE MIR -70 192 36 230 265 0 0 chr1 79525519 79525568 -163138785 + MIR SINE MIR 72 120 -142 196 222 0 0 chr1 79525564 79525600 -163138753 + L2 LINE L2 3266 3301 -12 * 21 57 0 0 chr1 79526422 79526457 -163137896 + AT_rich Low_complexity Low_complexity 1 35 0 336 250 96 37 chr1 79526465 79526601 -163137752 - MIR SINE MIR -9 253 110 208 321 37 12 chr1 79527438 79527519 -163136834 - L2 LINE L2 -38 3275 3193 287 362 0 38 chr1 79527651 79527756 -163136597 - L2 LINE L2 -1 3271 3171 345 260 32 16 chr1 79527953 79528076 -163136277 + L1ME1 LINE L1 38 162 -6234 535 225 95 26 chr1 79528089 79528320 -163136033 + L1ME1 LINE L1 988 1234 -5162 7464 221 63 55 chr1 79528423 79528991 -163135362 + L1ME1 LINE L1 2453 3015 -3220 1829 163 0 33 chr1 79528991 79529297 -163135056 + AluSx SINE Alu 1 296 -16 7464 221 63 55 chr1 79529297 79529449 -163134904 + L1ME1 LINE L1 3015 3164 -3071 623 225 8 8 chr1 79529449 79529578 -163134775 + FLAM_C SINE Alu 2 130 -3 7464 221 63 55 chr1 79529578 79529965 -163134388 + L1ME1 LINE L1 3164 3546 -2689 2302 88 71 3 chr1 79529965 79530316 -163134037 + THE1C LTR MaLR 1 375 0 7464 221 63 55 chr1 79530316 79531786 -163132567 + L1ME1 LINE L1 3546 5002 -1233 2464 152 8 80 chr1 79531786 79531981 -163132372 + MLT1C LTR MaLR 1 208 -259 1573 202 3 14 chr1 79531981 79532268 -163132085 + AluJo SINE Alu 7 290 -22 2464 152 8 80 chr1 79532268 79532572 -163131781 + MLT1C LTR MaLR 208 464 -3 7464 221 63 55 chr1 79532572 79532777 -163131576 + L1ME1 LINE L1 5002 5204 -1031 2334 96 0 3 chr1 79532777 79533079 -163131274 + AluSx SINE Alu 1 301 -11 7464 221 63 55 chr1 79533079 79533236 -163131117 + L1ME1 LINE L1 5204 5358 -877 2161 100 17 20 chr1 79533236 79533536 -163130817 + AluSx SINE Alu 1 299 -13 7464 221 63 55 chr1 79533536 79534336 -163130017 + L1ME1 LINE L1 5358 6233 -2 247 363 163 45 chr1 79534347 79534722 -163129631 - L2 LINE L2 -35 3237 2819 420 77 0 0 chr1 79535263 79535328 -163129025 + (TG)n Simple_repeat Simple_repeat 2 66 0 253 349 0 12 chr1 79535778 79535864 -163128489 - MIR SINE MIR -143 119 35 185 200 0 100 chr1 79538042 79538092 -163126261 + L2 LINE L2 3200 3244 -69 234 366 22 30 chr1 79538328 79538462 -163125891 - MER5A DNA MER1_type -14 175 43 * 416 319 21 21 chr1 79538346 79538487 -163125866 + MER5A DNA MER1_type 43 183 -6 327 98 0 0 chr1 79538993 79539044 -163125309 - MER4D LTR ERV1 -538 334 284 9773 171 83 33 chr1 79539086 79541336 -163123017 - LTR49-int LTR ERV1 -62 6269 3718 2009 152 3 0 chr1 79541336 79541633 -163122720 + AluSx SINE Alu 3 300 -12 9773 171 83 33 chr1 79541633 79543321 -163121032 - LTR49-int LTR ERV1 -2613 3718 2115 1287 178 49 91 chr1 79543319 79543467 -163120886 - LTR49-int LTR ERV1 -4563 1768 1615 * 1708 168 17 28 chr1 79543467 79543758 -163120595 - AluJb SINE Alu -24 288 1 1287 178 49 91 chr1 79543758 79544123 -163120230 - LTR49-int LTR ERV1 -4716 1615 1002 * 6725 135 77 62 chr1 79544122 79545242 -163119111 - LTR49-int LTR ERV1 -4997 1334 204 1610 198 0 7 chr1 79545242 79545535 -163118818 + AluJb SINE Alu 5 295 -17 6725 135 77 62 chr1 79545535 79545743 -163118610 - LTR49-int LTR ERV1 -6127 204 1 2724 130 123 18 chr1 79545744 79546250 -163118103 - LTR49 LTR ERV1 -36 559 1 822 184 128 46 chr1 79546255 79546451 -163117902 + MER46A DNA MER2_type 24 235 -1 5527 131 24 7 chr1 79546683 79547624 -163116729 - L1PA16 LINE L1 -19 6147 5195 23 68 0 0 chr1 79547832 79547876 -163116477 + AT_rich Low_complexity Low_complexity 1 44 0 185 227 23 0 chr1 79548027 79548071 -163116282 - L2 LINE L2 0 3272 3228 891 195 0 13 chr1 79548115 79548269 -163116084 + AluJb SINE Alu 1 152 -160 2036 86 0 0 chr1 79548620 79548877 -163115476 + AluSc SINE Alu 35 291 -18 1651 143 156 3 chr1 79549548 79549862 -163114491 + MLT1A1 LTR MaLR 3 364 -1 354 207 189 18 chr1 79549967 79550078 -163114275 - MIR SINE MIR -57 205 76 1018 175 103 0 chr1 79550085 79550279 -163114074 + MER46A DNA MER2_type 22 235 -1 954 95 16 0 chr1 79550874 79551000 -163113353 + BC200 scRNA scRNA 2 129 -71 336 267 98 56 chr1 79551213 79551419 -163112934 + MIR SINE MIR 2 212 -50 361 197 25 66 chr1 79552173 79552295 -163112058 - L1ME4a LINE L1 -59 6062 5946 329 233 68 0 chr1 79553379 79553452 -163110901 - L2 LINE L2 0 3272 3195 201 263 70 18 chr1 79554510 79554567 -163109786 - MIR3 SINE MIR -53 155 96 28410 107 65 9 chr1 79656035 79661837 -163002516 + L1PA7 LINE L1 13 6150 -4 464 122 14 0 chr1 79662400 79662474 -163001879 + AluJ/FRAM SINE Alu 224 298 -14 256 245 245 20 chr1 79663206 79663353 -163001000 + MIR SINE MIR 39 218 -44 309 299 52 0 chr1 79663538 79663635 -163000718 + L3 LINE CR1 692 793 -784 439 223 32 0 chr1 79663929 79664023 -163000330 + MER94 DNA DNA 38 134 0 559 202 77 117 chr1 79664115 79664363 -162999990 - MIR SINE MIR -15 247 10 948 322 75 48 chr1 79664418 79664730 -162999623 + L3 LINE CR1 973 1310 -267 319 210 111 134 chr1 79664730 79664907 -162999446 + MER112 DNA MER1_type 1 172 -84 1701 201 13 3 chr1 79664907 79665215 -162999138 - AluJb SINE Alu -1 311 1 319 210 111 134 chr1 79665215 79665299 -162999054 + MER112 DNA MER1_type 172 256 0 948 322 75 48 chr1 79665299 79665573 -162998780 + L3 LINE CR1 1310 1575 -2 387 173 0 0 chr1 79665684 79665765 -162998588 + GA-rich Low_complexity Low_complexity 4 84 0 644 314 138 39 chr1 79667403 79667876 -162996477 + L1MEd LINE L1 81 505 -5614 466 259 127 0 chr1 79667876 79668034 -162996319 - MER5B DNA MER1_type 0 178 1 1216 65 0 0 chr1 79668039 79668193 -162996160 + L1PA11 LINE L1 6019 6172 -2 644 314 138 39 chr1 79668193 79668385 -162995968 + L1MEd LINE L1 508 819 -5300 293 301 19 57 chr1 79668402 79668664 -162995689 + L1MEd LINE L1 897 1148 -4971 368 261 150 50 chr1 79668766 79668846 -162995507 + L1MEd LINE L1 1214 1285 -4844 2467 92 0 0 chr1 79668846 79669151 -162995202 + AluSx SINE Alu 1 305 -7 368 261 150 50 chr1 79669151 79669250 -162995103 + L1MEd LINE L1 1285 1411 -4718 1793 168 24 0 chr1 79669572 79669803 -162994550 + L1ME1 LINE L1 5479 5722 -444 2249 133 19 24 chr1 79669803 79670179 -162994174 + THE1C LTR MaLR 1 374 -1 1793 168 24 0 chr1 79670179 79670286 -162994067 + L1ME1 LINE L1 5722 5825 -341 * 8246 192 68 105 chr1 79670284 79671033 -162993320 + L1MCa LINE L1 32 808 -5618 2218 102 46 40 chr1 79671033 79671406 -162992947 + THE1C LTR MaLR 1 375 0 8246 192 68 105 chr1 79671406 79671860 -162992493 + L1MCa LINE L1 808 1278 -5148 2258 70 0 24 chr1 79671860 79672147 -162992206 + AluSc SINE Alu 24 303 -6 8246 192 68 105 chr1 79672147 79672469 -162991884 + L1MCa LINE L1 1278 1611 -4815 671 164 0 55 chr1 79672469 79672597 -162991756 + FLAM_C SINE Alu 1 121 -22 207 0 0 0 chr1 79672597 79672620 -162991733 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 8246 192 68 105 chr1 79672620 79673044 -162991309 + L1MCa LINE L1 1610 2048 -4378 246 32 0 0 chr1 79673044 79673075 -162991278 + (CA)n Simple_repeat Simple_repeat 2 32 0 8246 192 68 105 chr1 79673075 79673453 -162990900 + L1MCa LINE L1 2048 2439 -3987 2344 97 0 3 chr1 79673453 79673763 -162990590 + AluSp SINE Alu 1 309 -4 8246 192 68 105 chr1 79673763 79674426 -162989927 + L1MCa LINE L1 2439 3125 -3301 715 170 0 57 chr1 79674426 79674567 -162989786 + FLAM_C SINE Alu 2 134 -9 8246 192 68 105 chr1 79674567 79674776 -162989577 + L1MCa LINE L1 3125 3340 -3086 2539 65 3 0 chr1 79674776 79675084 -162989269 + AluSp SINE Alu 3 311 -2 8246 192 68 105 chr1 79675084 79676355 -162987998 + L1MCa LINE L1 3340 4593 -1833 515 243 59 52 chr1 79676501 79676637 -162987716 + MIR SINE MIR 20 156 -106 496 166 185 7 chr1 79676693 79676844 -162987509 + L1 LINE L1 4210 4387 -1759 42662 35 1 2 chr1 79676855 79683011 -162981342 - L1PA3 LINE L1 -3 6152 1 1214 132 19 105 chr1 79683025 79683080 -162981273 + L1MCa LINE L1 4675 4733 -1693 6134 21 0 0 chr1 79683080 79683783 -162980570 + L1PA4 LINE L1 5447 6149 -6 1214 132 19 105 chr1 79683783 79684052 -162980301 + L1MCa LINE L1 4733 4971 -1455 287 167 100 0 chr1 79684248 79684338 -162980015 + MER5C DNA MER1_type 164 262 -62 2354 145 16 0 chr1 79684343 79684730 -162979623 - MER57A LTR ERV1 -10 393 1 1139 140 30 25 chr1 79684730 79684965 -162979388 - MER57A-int LTR ERV1 0 7537 7302 650 126 71 31 chr1 79685006 79685133 -162979220 - LTR54B LTR ERV1 -366 132 1 363 319 106 11 chr1 79689824 79690097 -162974256 + L1M4 LINE L1 5002 5300 -846 231 244 35 0 chr1 79690105 79690191 -162974162 + L1M LINE L1 5317 5405 -900 29 60 0 0 chr1 79690354 79690404 -162973949 + AT_rich Low_complexity Low_complexity 1 50 0 2320 97 0 0 chr1 79690518 79690817 -162973536 - AluY SINE Alu -12 299 1 438 128 263 0 chr1 79690827 79690960 -162973393 + L1ME4a LINE L1 5838 6005 -116 1821 180 7 3 chr1 79690966 79691261 -162973092 + AluJb SINE Alu 1 296 -16 978 281 8 11 chr1 79691776 79692036 -162972317 - MIR SINE MIR -2 260 2 25 31 0 0 chr1 79694629 79694661 -162969692 + AT_rich Low_complexity Low_complexity 1 32 0 345 237 13 0 chr1 79695293 79695369 -162968984 + MIR3 SINE MIR 121 197 -11 48 0 0 0 chr1 79696395 79696443 -162967910 + AT_rich Low_complexity Low_complexity 1 48 0 913 163 7 7 chr1 79696489 79696642 -162967711 + AluJb SINE Alu 137 289 -23 1097 223 53 0 chr1 79696652 79696899 -162967454 - MIR SINE MIR -1 261 2 2609 138 74 54 chr1 79697256 79697328 -162967025 + L1MB3 LINE L1 5586 5655 -528 815 142 0 24 chr1 79697328 79697455 -162966898 + FLAM_C SINE Alu 1 124 -9 2609 138 74 54 chr1 79697455 79697488 -162966865 + L1MB3 LINE L1 5655 5686 -497 2294 78 0 4 chr1 79697488 79697820 -162966533 + AluSc SINE Alu 1 331 0 2609 138 74 54 chr1 79697820 79698290 -162966063 + L1MB3 LINE L1 5686 6175 -8 513 300 52 20 chr1 79698619 79698869 -162965484 + MIR SINE MIR 3 260 -2 593 298 42 57 chr1 79699100 79699503 -162964850 + L1M4 LINE L1 3321 3728 -2418 663 159 8 45 chr1 79699503 79699635 -162964718 + FLAM_C SINE Alu 1 127 -6 1718 181 0 20 chr1 79699644 79699942 -162964411 + AluJb SINE Alu 1 292 -20 593 298 42 57 chr1 79699942 79700146 -162964207 + L1M4 LINE L1 3736 3929 -2217 2269 100 13 0 chr1 79700942 79701242 -162963111 + AluSc SINE Alu 1 304 -5 2196 123 0 10 chr1 79701773 79702081 -162962272 - AluSx SINE Alu -7 305 1 184 185 0 0 chr1 79702678 79702705 -162961648 - L2 LINE L2 -24 3289 3263 224 328 82 37 chr1 79703669 79703803 -162960550 - L2 LINE L2 -1 3312 3173 430 286 62 6 chr1 79703910 79704071 -162960282 - MIR SINE MIR -73 189 20 21 0 0 0 chr1 79706143 79706164 -162958189 + AT_rich Low_complexity Low_complexity 1 21 0 451 212 30 38 chr1 79708682 79708814 -162955539 - L1ME LINE L1 -451 5670 5540 29 47 0 0 chr1 79709375 79709418 -162954935 + AT_rich Low_complexity Low_complexity 1 43 0 2391 105 0 0 chr1 79709475 79709781 -162954572 - AluSx SINE Alu -6 306 1 1492 247 91 16 chr1 79709854 79710378 -162953975 + L2 LINE L2 2490 3049 -264 2066 196 25 2 chr1 79710910 79711359 -162952994 + L1MB4 LINE L1 5713 6171 -9 355 235 113 35 chr1 79711661 79711776 -162952577 - MIR SINE MIR -13 249 126 465 276 31 8 chr1 79711833 79711960 -162952393 - MIR SINE MIR -17 245 116 483 284 133 87 chr1 79712064 79712624 -162951729 + L2 LINE L2 2594 3271 -1 2775 29 0 0 chr1 79712876 79713187 -162951166 - AluY SINE Alu 0 311 1 603 181 16 31 chr1 79713249 79713376 -162950977 + L2 LINE L2 3189 3313 0 186 103 0 0 chr1 79713863 79713892 -162950461 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 192 77 0 0 chr1 79714812 79714838 -162949515 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 901 172 20 0 chr1 79715363 79715514 -162948839 - FAM SINE Alu -17 158 5 2391 32 0 14 chr1 79716525 79716853 -162947500 - AluY SINE Alu 0 324 1 2244 99 3 0 chr1 79717044 79717337 -162947016 - AluSx SINE Alu -18 294 1 1586 247 61 38 chr1 79718940 79719066 -162945287 - L1MC4a LINE L1 -1867 5941 5819 4111 74 11 11 chr1 79719066 79719618 -162944735 + MER41A LTR ERV1 3 554 0 1586 247 61 38 chr1 79719618 79720146 -162944207 - L1MC4a LINE L1 -1989 5819 5272 30 59 0 0 chr1 79720343 79720394 -162943959 + AT_rich Low_complexity Low_complexity 1 51 0 269 253 105 0 chr1 79721142 79721237 -162943116 + MER117 DNA MER1_type 44 148 -49 2651 89 63 21 chr1 79721707 79722136 -162942217 - LTR7 LTR ERV1 -2 448 2 2504 61 45 13 chr1 79722137 79722515 -162941838 - HERVH LTR ERV1 0 7713 7324 1330 125 19 0 chr1 79722515 79722731 -162941622 - HERVH LTR ERV1 -1894 5819 5600 4120 139 5 1 chr1 79722732 79723392 -162940961 - HERVH LTR ERV1 -2564 5149 4488 3186 112 6 2 chr1 79723394 79723894 -162940459 - HERVH LTR ERV1 -3720 3993 3492 819 136 27 0 chr1 79723884 79724031 -162940322 - HERVH LTR ERV1 -4423 3290 3140 * 15880 87 39 16 chr1 79724001 79726488 -162937865 - HERVH LTR ERV1 -4709 3004 460 3981 112 52 48 chr1 79726484 79727435 -162936918 - HERVH LTR ERV1 -6875 838 1 * 2655 97 58 21 chr1 79727437 79727869 -162936484 - LTR7 LTR ERV1 -2 448 1 425 264 45 0 chr1 79728394 79728504 -162935849 + MIR SINE MIR 79 193 -69 21 36 0 0 chr1 79728660 79728688 -162935665 + AT_rich Low_complexity Low_complexity 1 28 0 562 273 96 86 chr1 79728811 79729231 -162935122 + L2 LINE L2 2610 3048 -265 1721 161 3 0 chr1 79729231 79729516 -162934837 + AluJo SINE Alu 3 288 -24 562 273 96 86 chr1 79729516 79729739 -162934614 + L2 LINE L2 3048 3267 -46 196 306 0 0 chr1 79729780 79729829 -162934524 + L2 LINE L2 3224 3272 0 300 211 14 0 chr1 79729854 79729925 -162934428 - MLT1F1 LTR MaLR 0 567 496 780 211 16 41 chr1 79730150 79730344 -162934009 - MLT1E LTR MaLR -2 591 403 1183 186 8 65 chr1 79732403 79732650 -162931703 + Tigger7 DNA MER2_type 2 234 -499 740 132 0 0 chr1 79732651 79732757 -162931596 + Tigger7 DNA MER2_type 2482 2587 0 2140 118 3 0 chr1 79732759 79733064 -162931289 - AluSx SINE Alu -6 306 1 22 0 0 0 chr1 79733346 79733368 -162930985 + AT_rich Low_complexity Low_complexity 1 22 0 1731 150 0 17 chr1 79733979 79734272 -162930081 - AluJb SINE Alu -2 310 23 1697 151 13 28 chr1 79735007 79735324 -162929029 - AluJb SINE Alu 0 312 1 286 265 206 63 chr1 79735475 79735664 -162928689 + MIR SINE MIR 21 236 -26 192 274 20 0 chr1 79737077 79737128 -162927225 + L2 LINE L2 2594 2645 -669 2142 88 7 14 chr1 79737269 79737564 -162926789 + AluSq SINE Alu 1 293 -20 422 341 7 18 chr1 79738024 79738207 -162926146 - MIR SINE MIR -64 144 9 784 180 53 7 chr1 79738593 79738743 -162925610 - MER45A DNA AcHobo -10 168 12 397 231 9 9 chr1 79739094 79739202 -162925151 + MER113 DNA MER1_type? 1 108 -413 2136 97 3 3 chr1 79739205 79739503 -162924850 - AluY SINE Alu -13 298 1 432 280 126 23 chr1 79739611 79739825 -162924528 + L1MC4a LINE L1 5610 5845 -1963 931 297 38 22 chr1 79740727 79741040 -162923313 - L3 LINE CR1 -573 1004 687 314 291 190 77 chr1 79741126 79741226 -162923127 - L3 LINE CR1 -1093 484 397 2095 92 0 3 chr1 79741226 79741681 -162922672 + AluSx SINE Alu 1 454 0 1542 178 27 7 chr1 79741687 79741979 -162922374 - AluJo SINE Alu -14 298 1 314 291 190 77 chr1 79741979 79742234 -162922119 - L3 LINE CR1 -1184 393 80 229 169 225 28 chr1 79743256 79743327 -162921026 - L2 LINE L2 0 3313 3229 1586 159 4 0 chr1 79743352 79743603 -162920750 + L1PA16 LINE L1 5893 6144 -22 1535 117 124 15 chr1 79744322 79744587 -162919766 - AluSg1 SINE Alu -15 294 1 259 253 35 58 chr1 79744665 79744752 -162919601 - L2 LINE L2 0 3272 3188 322 330 40 0 chr1 79744923 79745023 -162919330 - L2 LINE L2 -55 3217 3114 1620 224 115 42 chr1 79745135 79745684 -162918669 + MLT1E LTR MaLR 1 589 -4 381 230 0 40 chr1 79746448 79746522 -162917831 - L2 LINE L2 -5 3267 3197 575 269 57 100 chr1 79746522 79746656 -162917697 - MLT1L LTR MaLR 0 615 477 1528 173 35 10 chr1 79746656 79746945 -162917408 - AluJo SINE Alu -16 296 1 575 269 57 100 chr1 79746945 79747211 -162917142 - MLT1L LTR MaLR -138 477 232 422 284 182 17 chr1 79747552 79747848 -162916505 - L2 LINE L2 -420 2894 2550 321 343 75 54 chr1 79748543 79748823 -162915530 - L2 LINE L2 -58 3214 2929 2318 68 0 19 chr1 79749290 79749597 -162914756 + AluSq SINE Alu 1 301 -12 217 301 82 27 chr1 79749736 79749809 -162914544 - MIR3 SINE MIR -21 187 111 407 159 44 80 chr1 79749811 79749924 -162914429 - LTR27 LTR ERV1 -2 634 526 690 133 5 20 chr1 79749925 79750060 -162914293 - LTR27 LTR ERV1 -213 423 298 288 217 14 0 chr1 79750027 79750096 -162914257 - LTR1 LTR ERV1 -595 190 121 * 990 160 0 18 chr1 79750134 79750303 -162914050 - LTR28 LTR ERV1 -854 166 1 215 294 0 15 chr1 79750459 79750527 -162913826 + CT-rich Low_complexity Low_complexity 1 67 0 496 236 23 75 chr1 79750971 79751145 -162913208 - MER5B DNA MER1_type -3 175 11 352 237 176 0 chr1 79751378 79751509 -162912844 + MER117 DNA MER1_type 11 164 -33 253 323 0 77 chr1 79751606 79751736 -162912617 + MIR SINE MIR 20 139 -123 38 61 0 0 chr1 79752437 79752503 -162911850 + AT_rich Low_complexity Low_complexity 1 66 0 1336 91 0 0 chr1 79752578 79752754 -162911599 - AluSg/x SINE Alu -4 306 131 21 82 0 0 chr1 79753182 79753231 -162911122 + AT_rich Low_complexity Low_complexity 1 49 0 1973 147 0 6 chr1 79753453 79753765 -162910588 - AluJb SINE Alu 0 312 3 2178 97 3 0 chr1 79754728 79755026 -162909327 - AluSp SINE Alu -14 299 1 410 259 38 8 chr1 79755087 79755218 -162909135 + L1ME4a LINE L1 5961 6095 -26 2212 92 0 3 chr1 79755440 79755735 -162908618 - AluSg SINE Alu -16 294 1 26 30 0 0 chr1 79756159 79756192 -162908161 + AT_rich Low_complexity Low_complexity 1 33 0 429 106 0 0 chr1 79756192 79756258 -162908095 - L1MA3 LINE L1 -1 6304 6239 604 287 92 23 chr1 79757009 79757270 -162907083 + L2 LINE L2 2508 2786 -528 217 361 154 48 chr1 79757332 79757540 -162906813 + L2 LINE L2 3042 3271 -1 1985 132 0 3 chr1 79757725 79758021 -162906332 + AluSx SINE Alu 1 295 -17 2333 45 3 0 chr1 79759112 79759404 -162904949 + AluY SINE Alu 1 293 -18 786 157 0 22 chr1 79759456 79759590 -162904763 + FLAM_C SINE Alu 7 137 -6 767 159 0 23 chr1 79759597 79759729 -162904624 - FLAM_A SINE Alu -4 129 1 1300 170 0 4 chr1 79759769 79759998 -162904355 - AluJb SINE Alu -2 310 83 2101 111 0 7 chr1 79760086 79760384 -162903969 - AluSx SINE Alu -16 296 1 698 246 24 71 chr1 79761224 79761314 -162903039 - MIR SINE MIR -30 232 139 2332 66 0 41 chr1 79761314 79761634 -162902719 - AluY SINE Alu -4 307 1 698 246 24 71 chr1 79761634 79761754 -162902599 - MIR SINE MIR -123 139 32 247 215 129 21 chr1 79761837 79761930 -162902423 - MIR SINE MIR -70 138 36 1960 109 0 35 chr1 79762412 79762723 -162901630 + AluSg SINE Alu 1 300 -10 513 228 15 127 chr1 79764465 79764662 -162899691 - MER20 DNA MER1_type -1 218 44 1014 205 41 5 chr1 79765271 79765466 -162898887 - MLT1F LTR MaLR -236 306 105 1645 104 5 0 chr1 79765671 79765891 -162898462 - AluSq SINE Alu -92 221 1 224 342 0 0 chr1 79766028 79766104 -162898249 + MIR SINE MIR 30 105 -103 442 214 20 0 chr1 79766873 79766971 -162897382 + L2 LINE L2 3153 3252 -20 2103 109 0 0 chr1 79766975 79767268 -162897085 - AluSx SINE Alu -16 296 4 180 277 21 75 chr1 79767670 79767764 -162896589 - MIR SINE MIR -50 212 124 590 149 0 0 chr1 79768216 79768303 -162896050 + AluJ/FLAM SINE Alu 2 88 -224 821 170 0 0 chr1 79768303 79768438 -162895915 + AluJo/FRAM SINE Alu 165 299 -13 1991 116 11 0 chr1 79768597 79768881 -162895472 + AluSq SINE Alu 1 287 -26 1251 177 5 1 chr1 79769022 79769259 -162895094 + L1MB5 LINE L1 5700 5935 -233 484 217 17 33 chr1 79769267 79769387 -162894966 + L2 LINE L2 3155 3272 0 1097 170 22 45 chr1 79769479 79769662 -162894691 + L1MB5 LINE L1 5957 6136 -38 2232 103 3 0 chr1 79769662 79769964 -162894389 + AluSx SINE Alu 1 303 -9 1097 170 22 45 chr1 79769964 79770003 -162894350 + L1MB5 LINE L1 6136 6174 0 1995 120 0 3 chr1 79771189 79771480 -162892873 + AluSx SINE Alu 1 290 -22 25 0 0 0 chr1 79771480 79771505 -162892848 + AT_rich Low_complexity Low_complexity 1 25 0 1803 152 3 14 chr1 79772613 79772910 -162891443 + AluSx SINE Alu 1 294 -18 240 217 0 0 chr1 79772936 79772982 -162891371 + MIR3 SINE MIR 138 183 -25 772 185 0 0 chr1 79774535 79774665 -162889688 + FLAM_C SINE Alu 1 130 -3 316 285 278 11 chr1 79775658 79775921 -162888432 + L3 LINE CR1 1158 1490 -87 603 275 99 9 chr1 79776006 79776330 -162888023 - L1MC4 LINE L1 0 8042 7690 321 296 61 23 chr1 79776380 79776512 -162887841 - MER5B DNA MER1_type -34 144 8 201 102 82 20 chr1 79776575 79776624 -162887729 + (ATTAG)n Simple_repeat Simple_repeat 2 53 0 219 216 157 0 chr1 79777296 79777347 -162887006 + L3b LINE CR1 1498 1556 -27 311 277 50 40 chr1 79777927 79778028 -162886325 - L2 LINE L2 -3 3269 3168 1963 103 33 0 chr1 79778239 79778512 -162885841 - AluSg SINE Alu -14 296 15 22 0 0 0 chr1 79778831 79778853 -162885500 + AT_rich Low_complexity Low_complexity 1 22 0 386 137 5 0 chr1 79779020 79779078 -162885275 + Alu SINE Alu 3 52 -251 1569 103 24 0 chr1 79779078 79779291 -162885062 + AluSg/x SINE Alu 95 312 0 925 98 0 8 chr1 79779310 79779432 -162884921 + AluSq/x SINE Alu 13 133 -180 186 103 0 0 chr1 79779433 79779462 -162884891 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 241 206 147 0 chr1 79779520 79779588 -162884765 + MIR SINE MIR 185 262 0 342 297 10 0 chr1 79779615 79779729 -162884624 - MIR SINE MIR -62 146 35 737 209 34 14 chr1 79780006 79780154 -162884199 - MER5A DNA MER1_type 0 189 39 198 225 70 84 chr1 79780197 79780268 -162884085 + MIR SINE MIR 126 195 -67 1792 128 109 32 chr1 79780315 79780627 -162883726 + MER1B DNA MER1_type 1 336 -3 2222 122 0 0 chr1 79781198 79781502 -162882851 - AluSx SINE Alu -8 304 1 569 178 9 19 chr1 79781767 79781874 -162882479 + FLAM_A SINE Alu 16 121 -21 655 145 110 14 chr1 79781887 79782032 -162882321 - MER5A DNA MER1_type -28 161 3 2166 112 7 0 chr1 79782215 79782509 -162881844 + AluSx SINE Alu 1 296 -16 2150 141 0 0 chr1 79782511 79782823 -162881530 + AluSx SINE Alu 1 312 0 2028 144 3 0 chr1 79782905 79783197 -162881156 + AluSx SINE Alu 1 293 -19 241 250 0 0 chr1 79783555 79783607 -162880746 - MER5A DNA MER1_type -1 188 137 436 194 61 10 chr1 79783700 79783798 -162880555 + MER5B DNA MER1_type 21 123 -55 261 303 249 11 chr1 79783848 79784033 -162880320 + MIR SINE MIR 14 242 -20 21 0 0 0 chr1 79784044 79784065 -162880288 + AT_rich Low_complexity Low_complexity 1 21 0 1714 156 18 0 chr1 79784250 79784525 -162879828 + AluJb SINE Alu 1 280 -32 557 230 130 7 chr1 79785175 79785353 -162879000 + L1ME3A LINE L1 5977 6166 0 1606 167 87 9 chr1 79785751 79786074 -162878279 - MER7A DNA MER2_type 0 346 1 737 192 0 0 chr1 79790710 79790835 -162873518 + FLAM_A SINE Alu 1 125 -8 180 315 163 11 chr1 79796954 79797046 -162867307 - MIR3 SINE MIR -10 198 93 387 0 0 0 chr1 79798108 79798151 -162866202 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr1 79800488 79800510 -162863843 + AT_rich Low_complexity Low_complexity 1 22 0 275 344 136 60 chr1 79800675 79801044 -162863309 - L2 LINE L2 -40 3232 2836 513 310 170 45 chr1 79801330 79801917 -162862436 - L2 LINE L2 -826 2488 1763 1950 83 0 26 chr1 79801917 79802182 -162862171 - AluY SINE Alu -20 291 34 513 310 170 45 chr1 79802182 79802436 -162861917 - L2 LINE L2 -1551 1763 1542 428 275 191 0 chr1 79803031 79803162 -162861191 + MER5A DNA MER1_type 31 186 -3 732 250 198 9 chr1 79803209 79803553 -162860800 + L1ME4a LINE L1 5696 6104 -17 1879 102 74 25 chr1 79806215 79806500 -162857853 - AluSx SINE Alu -13 299 1 434 246 55 18 chr1 79809453 79809563 -162854790 + L2 LINE L2 3195 3308 -5 375 289 86 13 chr1 79810239 79810391 -162853962 - L3b LINE CR1 -8 1575 1413 208 322 91 33 chr1 79810417 79810538 -162853815 - L3 LINE CR1 -249 1328 1201 614 195 17 8 chr1 79812416 79812534 -162851819 - MER58B DNA MER1_type -25 316 198 34 0 0 0 chr1 79812830 79812864 -162851489 + AT_rich Low_complexity Low_complexity 1 34 0 2109 95 7 17 chr1 79814625 79814921 -162849432 + AluSx SINE Alu 1 293 -19 180 0 0 0 chr1 79814921 79814941 -162849412 + (TA)n Simple_repeat Simple_repeat 2 21 0 181 279 134 100 chr1 79815535 79815886 -162848467 + L2 LINE L2 1721 2083 -1231 186 189 0 0 chr1 79816159 79816196 -162848157 + GA-rich Low_complexity Low_complexity 1 37 0 1397 154 9 118 chr1 79816658 79816996 -162847357 + AluJo SINE Alu 1 301 -1 213 132 0 0 chr1 79817102 79817140 -162847213 + (TA)n Simple_repeat Simple_repeat 2 39 0 379 253 127 25 chr1 79817642 79817800 -162846553 - MIR3 SINE MIR -1 207 34 967 186 55 14 chr1 79818092 79818312 -162846041 + AluJo SINE Alu 82 310 -2 216 293 35 0 chr1 79818350 79818408 -162845945 + L2 LINE L2 1823 1882 -1432 413 287 54 0 chr1 79818408 79818575 -162845778 - MER104 DNA Tc2 -4 176 1 625 259 330 13 chr1 79818581 79819056 -162845297 + L2 LINE L2 1888 2513 -801 304 255 14 103 chr1 79819122 79819201 -162845152 + L2 LINE L2 2686 2748 -566 1683 154 79 4 chr1 79819201 79819481 -162844872 - AluJb SINE Alu -11 301 1 304 255 14 103 chr1 79819481 79819546 -162844807 + L2 LINE L2 2748 2817 -497 2106 92 0 83 chr1 79819679 79820006 -162844347 + AluSx SINE Alu 1 300 -12 335 300 112 6 chr1 79820768 79820938 -162843415 - L1ME4a LINE L1 -204 5917 5730 302 283 283 0 chr1 79821310 79821497 -162842856 + L1ME4a LINE L1 5882 6121 0 347 340 38 0 chr1 79821545 79821651 -162842702 + L2 LINE L2 3204 3313 0 21 0 0 0 chr1 79821738 79821759 -162842594 + AT_rich Low_complexity Low_complexity 1 21 0 1048 140 4 2 chr1 79821876 79822113 -162842240 - AluJb SINE Alu -19 293 2 1711 173 3 7 chr1 79822831 79823126 -162841227 + AluJb SINE Alu 1 294 -18 2246 107 0 0 chr1 79827028 79827326 -162837027 - AluSx SINE Alu -9 303 6 2294 110 0 0 chr1 79827409 79827709 -162836644 + AluSg SINE Alu 1 300 -10 22 0 0 0 chr1 79828158 79828180 -162836173 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 79828250 79828270 -162836083 + (A)n Simple_repeat Simple_repeat 1 20 0 313 277 210 52 chr1 79828570 79829046 -162835307 + L2 LINE L2 1246 1796 -1518 674 309 126 46 chr1 79829048 79829711 -162834642 + L2 LINE L2 2338 3058 -214 796 131 0 51 chr1 79829926 79830063 -162834290 - FLAM_A SINE Alu -3 130 1 1227 68 0 0 chr1 79830074 79830221 -162834132 - AluY SINE Alu -16 295 149 22 56 0 0 chr1 79830270 79830306 -162834047 + AT_rich Low_complexity Low_complexity 1 36 0 415 123 27 27 chr1 79830320 79830393 -162833960 + MADE1 DNA Mariner 8 80 0 370 264 61 0 chr1 79831523 79831634 -162832719 - MIR SINE MIR -67 141 61 925 159 53 6 chr1 79831900 79832070 -162832283 + MER58A DNA MER1_type 47 224 0 1783 173 10 3 chr1 79832587 79832888 -162831465 + AluJo SINE Alu 1 303 -9 599 225 188 28 chr1 79833427 79833645 -162830708 - MIR SINE MIR -4 258 6 2231 115 7 0 chr1 79833902 79834206 -162830147 + AluSx SINE Alu 1 306 -6 221 393 32 46 chr1 79834957 79835176 -162829177 - L2 LINE L2 -409 2905 2690 230 264 0 99 chr1 79835359 79835450 -162828903 + L2 LINE L2 3232 3313 0 300 359 135 16 chr1 79835455 79835834 -162828519 - L2 LINE L2 -1015 2299 1876 28 0 0 0 chr1 79836043 79836071 -162828282 + AT_rich Low_complexity Low_complexity 1 28 0 2135 103 7 0 chr1 79836440 79836754 -162827599 + AluSq SINE Alu 1 316 0 208 271 17 17 chr1 79837032 79837091 -162827262 + L2 LINE L2 3247 3305 -8 319 333 128 0 chr1 79837158 79837299 -162827054 + MIR SINE MIR 34 192 -70 259 278 24 71 chr1 79837346 79837472 -162826881 + 7SK RNA RNA 8 127 -66 940 224 40 9 chr1 79837823 79838046 -162826307 - MIR SINE MIR -18 244 15 260 365 52 0 chr1 79839322 79839418 -162824935 - L2 LINE L2 -36 3236 3136 1088 202 74 4 chr1 79839666 79839909 -162824444 + MIR SINE MIR 3 262 0 315 261 0 0 chr1 79839930 79839999 -162824354 - MIR SINE MIR -75 187 119 414 207 0 0 chr1 79841119 79841201 -162823152 - MER20B DNA MER1_type -196 587 506 5911 131 51 23 chr1 79841400 79842483 -162821870 + L1MC1 LINE L1 5202 6321 -12 1548 178 87 0 chr1 79842554 79842830 -162821523 - AluJb SINE Alu -12 300 1 2188 97 0 7 chr1 79843209 79843519 -162820834 + AluSg SINE Alu 1 308 -2 613 240 112 47 chr1 79843987 79844133 -162820220 - L2 LINE L2 -1041 2273 2138 1462 126 36 5 chr1 79844133 79844355 -162819998 - MER30 DNA MER1_type -1 229 1 613 240 112 47 chr1 79844355 79844466 -162819887 - L2 LINE L2 -1176 2138 1999 882 238 52 20 chr1 79944479 79944822 -162719531 - MER74A LTR ERVL -4 554 121 1298 287 112 34 chr1 79944992 79945580 -162718773 - L2 LINE L2 -2148 1166 533 743 219 153 0 chr1 79946463 79946659 -162717694 - L2 LINE L2 0 3313 3088 2322 91 3 0 chr1 79946928 79947226 -162717127 + AluSg SINE Alu 5 303 -7 661 222 21 0 chr1 79947310 79947454 -162716899 - MIR SINE MIR -11 251 105 347 298 212 0 chr1 79947453 79947651 -162716702 + MIR SINE MIR 23 262 0 * 1413 230 94 11 chr1 79948392 79949009 -162715344 + L1ME LINE L1 5073 5739 -427 256 226 0 19 chr1 79949056 79949162 -162715191 + (TA)n Simple_repeat Simple_repeat 1 104 0 4917 217 40 38 chr1 79949213 79949351 -162715002 + L1MA5A LINE L1 4038 4174 -2159 1973 128 3 10 chr1 79949351 79949648 -162714705 + AluSx SINE Alu 1 295 -17 4917 217 40 38 chr1 79949648 79951013 -162713340 + L1MA5A LINE L1 4174 5534 -799 473 176 0 0 chr1 79951013 79951087 -162713266 + AluJ/FLAM SINE Alu 1 74 -238 1565 167 18 18 chr1 79951088 79951363 -162712990 + AluJo SINE Alu 30 304 -8 4917 217 40 38 chr1 79951363 79951631 -162712722 + L1MA5A LINE L1 5533 5871 -462 1148 219 26 26 chr1 79951679 79952031 -162712322 + L1M4 LINE L1 2879 3230 -2916 4559 196 61 51 chr1 79952033 79952745 -162711608 + L1MB7 LINE L1 3913 4616 -1568 1651 112 5 0 chr1 79952745 79952969 -162711384 + AluSx SINE Alu 1 225 -87 675 129 0 0 chr1 79952969 79953088 -162711265 + AluSp/q SINE Alu 194 312 0 4559 196 61 51 chr1 79953088 79954356 -162709997 + L1MB7 LINE L1 4615 5992 -192 1401 203 112 28 chr1 79954373 79954767 -162709586 - MSTC LTR MaLR 0 428 2 5222 222 180 26 chr1 79954768 79956271 -162708082 - MSTC-int LTR MaLR 0 1735 2 1467 188 68 39 chr1 79956271 79956685 -162707668 - MSTC LTR MaLR -2 426 1 387 230 81 20 chr1 79956692 79956842 -162707511 + L1MB7 LINE L1 6017 6167 -13 1061 269 158 21 chr1 79956851 79957202 -162707151 + L1M4 LINE L1 3376 3678 -2468 207 0 0 0 chr1 79957202 79957225 -162707128 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1061 269 158 21 chr1 79957225 79957597 -162706756 + L1M4 LINE L1 3678 4198 -1948 1286 209 50 18 chr1 79957671 79957948 -162706405 - AluJo SINE Alu -22 290 5 964 264 176 22 chr1 79957968 79958859 -162705494 + L1M4 LINE L1 4372 5399 -747 2916 146 29 2 chr1 79958862 79959340 -162705013 - Tigger3b DNA MER2_type -740 491 1 778 29 19 9 chr1 79960031 79960136 -162704217 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 2060 95 4 7 chr1 79960268 79960715 -162703638 - AluSq SINE Alu 0 456 11 2287 91 0 7 chr1 79961584 79961882 -162702471 + AluSx SINE Alu 1 296 -16 21 71 0 0 chr1 79961887 79961929 -162702424 + AT_rich Low_complexity Low_complexity 1 42 0 1207 83 8 80 chr1 79962528 79962792 -162701561 - AluSx SINE Alu -34 278 34 234 250 39 0 chr1 79963795 79963847 -162700506 + MER5A DNA MER1_type 1 54 -135 1034 125 72 0 chr1 79963848 79964000 -162700353 - AluJb SINE Alu -17 295 133 717 214 46 0 chr1 79964000 79964131 -162700222 + MER5A DNA MER1_type 50 186 -3 428 275 51 22 chr1 79964827 79964965 -162699388 + MER5B DNA MER1_type 37 178 0 238 388 78 0 chr1 79965152 79965268 -162699085 - MIR SINE MIR -63 145 21 693 158 0 31 chr1 79965874 79966001 -162698352 - FLAM_A SINE Alu -10 123 1 22 0 0 0 chr1 79966098 79966120 -162698233 + AT_rich Low_complexity Low_complexity 1 22 0 804 101 7 43 chr1 79966455 79966593 -162697760 - AluJ SINE Alu -169 133 1 25 31 0 0 chr1 79966733 79966765 -162697588 + AT_rich Low_complexity Low_complexity 1 32 0 729 198 243 9 chr1 79967771 79967993 -162696360 + L1MD3 LINE L1 7707 7980 -15 261 151 0 0 chr1 79968353 79968406 -162695947 + CT-rich Low_complexity Low_complexity 1 53 0 180 0 0 0 chr1 79968923 79968943 -162695410 + (A)n Simple_repeat Simple_repeat 1 20 0 431 286 78 31 chr1 79969021 79969213 -162695140 - MIR SINE MIR -56 206 6 1786 159 32 0 chr1 79970107 79970390 -162693963 - AluJb SINE Alu -20 292 1 180 353 52 17 chr1 79971036 79971152 -162693201 + MER5A DNA MER1_type 5 124 -65 * 559 216 45 102 chr1 79971067 79971243 -162693110 - MER5A DNA MER1_type -23 166 1 2197 118 0 9 chr1 79971522 79971837 -162692516 + AluSx SINE Alu 1 312 0 2136 137 0 13 chr1 79972628 79972943 -162691410 + AluSx SINE Alu 2 312 0 1877 138 0 11 chr1 79973599 79973882 -162690471 + AluJb SINE Alu 14 293 -19 407 268 333 12 chr1 79974449 79974617 -162689736 - MIR SINE MIR -5 257 36 868 181 5 43 chr1 79974770 79974958 -162689395 + AluJo SINE Alu 121 301 -11 1293 153 5 5 chr1 79975104 79975313 -162689040 + AluJo SINE Alu 3 211 -101 22 56 0 0 chr1 79975952 79975988 -162688365 + AT_rich Low_complexity Low_complexity 1 36 0 2276 118 0 0 chr1 79976123 79976427 -162687926 + AluSx SINE Alu 1 304 -8 1390 213 0 22 chr1 79977648 79977921 -162686432 - AluJo SINE Alu -45 267 1 907 306 165 37 chr1 79978329 79979296 -162685057 - L2 LINE L2 0 3313 2218 539 270 49 32 chr1 79979329 79979514 -162684839 - MER5A DNA MER1_type -1 188 1 425 324 132 30 chr1 79979531 79979926 -162684427 - L2 LINE L2 -1152 2162 1728 23 33 0 0 chr1 79980430 79980460 -162683893 + AT_rich Low_complexity Low_complexity 1 30 0 1522 138 86 15 chr1 79980665 79980934 -162683419 - AluJo SINE Alu -6 306 19 1365 188 83 28 chr1 79981026 79981214 -162683139 - MER2 DNA MER2_type -1 343 128 450 0 0 0 chr1 79981214 79981264 -162683089 + (TA)n Simple_repeat Simple_repeat 1 50 0 1365 188 83 28 chr1 79981264 79981400 -162682953 - MER2 DNA MER2_type -216 128 1 1804 188 3 0 chr1 79981507 79981816 -162682537 + AluJb SINE Alu 1 310 -2 701 284 25 63 chr1 79982242 79982481 -162681872 - MIR SINE MIR -14 248 19 819 173 0 0 chr1 79982639 79982772 -162681581 + FLAM_C SINE Alu 1 133 0 325 117 39 0 chr1 79982775 79982852 -162681501 + GA-rich Low_complexity Low_complexity 5 84 0 2127 130 7 0 chr1 79984369 79984668 -162679685 - AluSx SINE Alu -11 301 1 254 221 202 19 chr1 79985545 79985649 -162678704 - Charlie8 DNA MER1_type -2203 214 92 213 39 0 0 chr1 79986065 79986091 -162678262 + (A)n Simple_repeat Simple_repeat 1 26 0 1898 142 7 4 chr1 79988749 79989053 -162675300 - AluSx SINE Alu 0 305 1 194 340 130 0 chr1 79989126 79989226 -162675127 - MIR SINE MIR -59 149 37 1856 104 29 45 chr1 79989496 79989804 -162674549 + AluSq SINE Alu 5 307 -6 313 316 26 20 chr1 79989977 79990129 -162674224 + L1ME4a LINE L1 5639 5791 -2017 239 250 58 29 chr1 79990299 79990403 -162673950 + L1ME4a LINE L1 5978 6084 -37 185 195 24 0 chr1 79990658 79990699 -162673654 + MER5C DNA MER1_type 82 123 -201 1703 149 47 17 chr1 79991332 79991633 -162672720 + AluJo SINE Alu 3 312 0 322 310 62 35 chr1 79991640 79991785 -162672568 + MIR3 SINE MIR 25 173 -35 21 0 0 0 chr1 79991861 79991882 -162672471 + AT_rich Low_complexity Low_complexity 1 21 0 462 203 62 8 chr1 79993473 79993601 -162670752 + L1M4 LINE L1 4645 4779 -1367 308 343 71 47 chr1 79993609 79993863 -162670490 + L1M2 LINE L1 674 933 -5916 25 0 0 0 chr1 79993908 79993933 -162670420 + GC_rich Low_complexity Low_complexity 1 25 0 180 152 0 0 chr1 79995174 79995207 -162669146 + A-rich Low_complexity Low_complexity 3 35 0 21 0 0 0 chr1 79996142 79996163 -162668190 + AT_rich Low_complexity Low_complexity 1 21 0 629 289 57 46 chr1 79996172 79996435 -162667918 - L3 LINE CR1 -5 1572 1307 21 0 0 0 chr1 79996499 79996520 -162667833 + AT_rich Low_complexity Low_complexity 1 21 0 291 176 0 0 chr1 79998266 79998317 -162666036 - MIR SINE MIR -77 131 81 340 310 142 31 chr1 79998946 79999172 -162665181 + L1M2 LINE L1 778 1028 -5821 2178 106 0 3 chr1 79999569 79999871 -162664482 + AluSx SINE Alu 1 301 -11 309 300 82 35 chr1 80000126 80000296 -162664057 + L2 LINE L2 1164 1341 -1973 574 321 59 15 chr1 80000327 80000598 -162663755 + L2 LINE L2 1819 2101 -1213 866 92 55 266 chr1 80000615 80000942 -162663411 - Tigger3(Golem) DNA MER2_type 0 3029 2772 446 276 76 0 chr1 80000939 80001044 -162663309 - Tigger3(Golem) DNA MER2_type -2887 142 30 * 745 257 158 6 chr1 80001084 80001407 -162662946 + L2 LINE L2 2185 2556 -758 696 264 172 36 chr1 80001606 80001815 -162662538 + L2 LINE L2 2905 3084 -229 1434 170 21 112 chr1 80001815 80002145 -162662208 + AluJb SINE Alu 2 301 -11 696 264 172 36 chr1 80002145 80002295 -162662058 + L2 LINE L2 3084 3313 0 1955 177 84 9 chr1 80002778 80003230 -162661123 - L1MCb LINE L1 -4896 1149 664 1673 211 151 78 chr1 80003276 80004009 -162660344 - LTR1B LTR ERV1 -39 787 1 1915 262 86 5 chr1 80004009 80004566 -162659787 - L1MCa LINE L1 -5677 749 148 185 327 75 19 chr1 80004577 80004684 -162659669 - L2 LINE L2 -925 2389 2277 1849 132 6 27 chr1 80004685 80005042 -162659311 - MER4A LTR ERV1 0 664 257 599 128 32 0 chr1 80005039 80005133 -162659220 - MER4A LTR ERV1 -567 97 1 * 14116 131 70 28 chr1 80005134 80007678 -162656675 - MER4A-int LTR ERV1 0 6598 3949 2474 126 72 18 chr1 80007711 80007867 -162656486 - MER4A-int LTR ERV1 -3278 3320 3174 1480 155 147 0 chr1 80007867 80008132 -162656221 - AluSq SINE Alu -9 304 1 2474 126 72 18 chr1 80008132 80008529 -162655824 - MER4A-int LTR ERV1 -3424 3174 2737 1535 128 58 0 chr1 80008529 80008772 -162655581 + LTR8 LTR ERV1 1 257 -434 4205 81 61 24 chr1 80008772 80009478 -162654875 - MER4A-int LTR ERV1 -4103 2495 1764 1259 87 48 29 chr1 80009497 80009703 -162654650 - MER4A-int LTR ERV1 -5599 1159 950 3740 126 37 52 chr1 80009729 80009971 -162654382 - MER4A-int LTR ERV1 -5912 846 602 2467 63 0 7 chr1 80009971 80010273 -162654080 - AluY SINE Alu -11 300 1 3740 126 37 52 chr1 80010273 80010671 -162653682 - MER4A-int LTR ERV1 -6156 602 215 2884 79 88 53 chr1 80010681 80011203 -162653150 - MER4A-int LTR ERV1 -6009 589 1 1678 144 0 76 chr1 80011206 80011489 -162652864 - MER4A LTR ERV1 0 664 361 1788 144 46 3 chr1 80011489 80011774 -162652579 - AluSx SINE Alu -15 297 1 1678 144 0 76 chr1 80011774 80011834 -162652519 - MER4A LTR ERV1 -303 361 291 1949 159 7 0 chr1 80011834 80012130 -162652223 + AluSx SINE Alu 1 298 -14 1678 144 0 76 chr1 80012130 80012159 -162652194 - MER4A LTR ERV1 -373 291 261 311 146 18 18 chr1 80012159 80012214 -162652139 - MER4A LTR ERV1 -566 98 44 1390 193 98 17 chr1 80012315 80012611 -162651742 + MER21B LTR ERV1 1 320 -543 2206 94 7 10 chr1 80012730 80013027 -162651326 - AluSq SINE Alu -17 296 1 2324 107 3 3 chr1 80013098 80013407 -162650946 - AluSp SINE Alu -4 309 1 211 188 10 69 chr1 80014026 80014127 -162650226 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 3159 110 30 15 chr1 80014176 80014704 -162649649 - L1MA2 LINE L1 0 6304 5769 6294 123 28 6 chr1 80014705 80016429 -162647924 - L1PA5 LINE L1 -14 6140 4377 1256 144 0 5 chr1 80016534 80016721 -162647632 - AluSq SINE Alu -127 186 1 1536 169 31 4 chr1 80016740 80017001 -162647352 - AluJb SINE Alu -34 278 11 200 386 19 51 chr1 80017079 80017237 -162647116 - L2 LINE L2 -179 3093 2941 226 213 88 12 chr1 80017459 80017539 -162646814 - MLT1L LTR MaLR -11 604 519 441 232 56 113 chr1 80017594 80017860 -162646493 - MLT1J LTR MaLR -177 438 99 388 311 38 49 chr1 80017997 80018180 -162646173 + L2 LINE L2 2607 2787 -527 216 0 0 0 chr1 80018318 80018342 -162646011 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2206 93 0 0 chr1 80018344 80018623 -162645730 - AluSg SINE Alu -31 279 1 368 347 0 16 chr1 80018718 80018842 -162645511 + MER5B DNA MER1_type 1 122 -56 1478 184 58 50 chr1 80018842 80019066 -162645287 + MER63B DNA MER1_type 1 231 -831 1937 116 47 0 chr1 80019066 80019342 -162645011 - AluSg SINE Alu -19 291 3 1478 184 58 50 chr1 80019342 80019497 -162644856 + MER63B DNA MER1_type 231 383 -53 22 35 0 0 chr1 80019522 80019551 -162644802 + AT_rich Low_complexity Low_complexity 1 29 0 209 167 0 0 chr1 80019555 80019591 -162644762 + MER5A DNA MER1_type 80 115 -74 2612 239 62 59 chr1 80019592 80021305 -162643048 + L1MC3 LINE L1 3 2040 -4851 735 171 7 27 chr1 80021318 80021464 -162642889 - FLAM_C SINE Alu 0 143 1 852 210 302 3 chr1 80021464 80021755 -162642598 + L1MC3 LINE L1 2026 2403 -4538 1056 172 20 20 chr1 80021770 80022020 -162642333 + L1MC3 LINE L1 3515 3764 -3177 10937 219 63 42 chr1 80022478 80022706 -162641647 + L1MC3 LINE L1 4498 4720 -3860 3932 146 48 15 chr1 80022706 80023440 -162640913 + L1MA7 LINE L1 5507 6278 -13 10937 219 63 42 chr1 80023440 80023584 -162640769 + L1MC3 LINE L1 4720 4859 -3721 2122 118 3 0 chr1 80023584 80023873 -162640480 + AluSq SINE Alu 1 290 -23 10937 219 63 42 chr1 80023873 80025000 -162639353 + L1MC3 LINE L1 4859 5960 -2620 2182 126 39 22 chr1 80025000 80025358 -162638995 - THE1B LTR MaLR 0 364 1 11591 96 7 1 chr1 80025358 80026928 -162637425 - THE1B-int LTR MaLR 0 1580 1 2262 130 28 22 chr1 80026928 80027290 -162637063 - THE1B LTR MaLR 0 364 1 10937 219 63 42 chr1 80027290 80029688 -162634665 + L1MC3 LINE L1 5959 8570 -10 340 237 108 0 chr1 80029688 80029781 -162634572 + MER5A DNA MER1_type 87 189 0 214 303 145 35 chr1 80030816 80030961 -162633392 + MIR3 SINE MIR 9 169 -39 37 81 0 0 chr1 80031016 80031102 -162633251 + AT_rich Low_complexity Low_complexity 1 86 0 23 78 0 0 chr1 80032692 80032743 -162631610 + AT_rich Low_complexity Low_complexity 1 51 0 240 50 25 25 chr1 80032763 80032803 -162631550 - MADE1 DNA Mariner -40 40 1 607 247 12 6 chr1 80032899 80033069 -162631284 - L1M4 LINE L1 -3648 2498 2328 240 163 0 0 chr1 80033293 80033336 -162631017 + A-rich Low_complexity Low_complexity 1 43 0 231 252 97 58 chr1 80033514 80033617 -162630736 + L1MEd LINE L1 563 669 -5450 1367 149 40 102 chr1 80033620 80033943 -162630410 + AluJo SINE Alu 3 305 -7 450 94 0 0 chr1 80033955 80034019 -162630334 + (GGAGAA)n Simple_repeat Simple_repeat 4 67 0 1661 147 64 4 chr1 80034159 80034425 -162629928 + AluSx SINE Alu 1 282 -30 195 42 0 0 chr1 80034440 80034464 -162629889 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 33 56 0 0 chr1 80034473 80034527 -162629826 + AT_rich Low_complexity Low_complexity 1 54 0 475 265 74 47 chr1 80034562 80034643 -162629710 + L1MEd LINE L1 2357 2434 -3695 2023 120 0 3 chr1 80034643 80034967 -162629386 + AluSx SINE Alu 1 323 0 475 265 74 47 chr1 80034967 80035403 -162628950 + L1MEd LINE L1 2434 2922 -3207 688 177 43 9 chr1 80036124 80036290 -162628063 - MIR SINE MIR -31 231 8 2154 123 10 0 chr1 80036396 80036705 -162627648 - AluSx SINE Alu 0 312 1 2336 90 7 0 chr1 80036712 80037013 -162627340 - AluSq SINE Alu -10 303 1 190 263 12 62 chr1 80037292 80037372 -162626981 - L3 LINE CR1 -1146 431 356 2199 170 57 63 chr1 80037999 80038035 -162626318 - MLT2B1 LTR ERVL 0 520 485 213 39 0 0 chr1 80038035 80038061 -162626292 + (TA)n Simple_repeat Simple_repeat 2 27 0 2199 170 57 63 chr1 80038061 80038072 -162626281 - MLT2B1 LTR ERVL -35 485 475 2121 108 7 0 chr1 80038072 80038382 -162625971 - AluSc SINE Alu 0 312 1 2199 170 57 63 chr1 80038382 80038855 -162625498 - MLT2B1 LTR ERVL -45 475 1 361 308 68 54 chr1 80039130 80039481 -162624872 + L1MEd LINE L1 3888 4243 -1886 1875 246 169 17 chr1 80039574 80040016 -162624337 + HAL1 LINE L1 993 1366 -1141 1623 134 94 88 chr1 80040016 80040389 -162623964 + THE1C LTR MaLR 1 375 0 1875 246 169 17 chr1 80040389 80040714 -162623639 + HAL1 LINE L1 1366 1877 -630 1951 154 7 0 chr1 80040847 80041145 -162623208 - AluSx SINE Alu -6 306 7 2028 139 3 3 chr1 80041732 80042035 -162622318 - AluSx SINE Alu -8 304 2 2041 83 36 4 chr1 80042330 80042606 -162621747 - AluSc SINE Alu -24 285 1 375 105 53 0 chr1 80042916 80042992 -162621361 - L1MA10 LINE L1 -2 6332 6253 2067 99 25 3 chr1 80043418 80043702 -162620651 + AluSq SINE Alu 1 290 -23 225 65 0 0 chr1 80043709 80043740 -162620613 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 702 184 65 42 chr1 80044598 80044766 -162619587 - FAM SINE Alu -3 172 1 766 174 148 36 chr1 80045397 80045593 -162618760 + MER20 DNA MER1_type 1 218 -1 260 301 129 21 chr1 80046689 80046782 -162617571 + L3 LINE CR1 1464 1566 -11 5297 185 38 22 chr1 80047005 80048246 -162616107 - L1MC2 LINE L1 -2 6342 5080 5779 233 33 31 chr1 80048258 80048626 -162615727 - L1MC2 LINE L1 -2044 4102 3736 2325 71 0 16 chr1 80048626 80048934 -162615419 - AluY SINE Alu -8 303 1 5779 233 33 31 chr1 80048934 80049296 -162615057 - L1MC2 LINE L1 -2410 3736 3376 2018 77 3 148 chr1 80049296 80049647 -162614706 + AluSp SINE Alu 1 300 -13 5779 233 33 31 chr1 80049647 80049672 -162614681 - L1MC2 LINE L1 -2770 3376 3353 186 43 0 0 chr1 80049672 80049695 -162614658 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2639 47 0 0 chr1 80049695 80050015 -162614338 - L1PA5 LINE L1 -11 6143 5824 5779 233 33 31 chr1 80050015 80050682 -162613671 - L1MC2 LINE L1 -2793 3353 2689 2429 67 0 16 chr1 80050682 80050996 -162613357 - AluY SINE Alu -2 309 1 5779 233 33 31 chr1 80050996 80051050 -162613303 - L1MC2 LINE L1 -3457 2689 2637 2063 118 3 7 chr1 80051050 80051337 -162613016 + AluSq SINE Alu 2 287 -26 5779 233 33 31 chr1 80051337 80051710 -162612643 - L1MC2 LINE L1 -3509 2637 2244 2755 186 26 17 chr1 80051720 80052252 -162612101 - MER74A LTR ERVL 0 558 22 1704 231 23 66 chr1 80052254 80052344 -162612009 - L1MDa LINE L1 -1587 4953 4861 2112 101 9 31 chr1 80052344 80052662 -162611691 - AluSx SINE Alu -1 311 1 1704 231 23 66 chr1 80052662 80052775 -162611578 - L1MDa LINE L1 -1679 4861 4745 1693 195 3 3 chr1 80052775 80053073 -162611280 - AluJb SINE Alu -12 300 3 1704 231 23 66 chr1 80053073 80053475 -162610878 - L1MDa LINE L1 -1795 4745 4373 588 213 22 7 chr1 80053475 80053611 -162610742 - MLT1A1 LTR MaLR 0 365 228 3301 188 38 19 chr1 80053616 80054248 -162610105 - MER73 LTR ERVL 0 644 1 1020 169 25 25 chr1 80054275 80054476 -162609877 - MLT1A1 LTR MaLR -164 201 1 8888 223 84 39 chr1 80054477 80058653 -162605700 - L1MDa LINE L1 -2165 4375 1 1837 210 76 35 chr1 80058673 80059158 -162605195 + MLT1D LTR MaLR 1 505 0 921 172 12 18 chr1 80059728 80059891 -162604462 + FRAM SINE Alu 1 162 -14 381 253 99 99 chr1 80060274 80060476 -162603877 - MIR3 SINE MIR -3 205 4 379 187 26 199 chr1 80060872 80061139 -162603214 - Charlie2 DNA MER1_type -1 2861 2641 2310 232 36 62 chr1 80061141 80061969 -162602384 - L1ME2 LINE L1 -9 6155 5315 2286 88 10 3 chr1 80061969 80062275 -162602078 - AluSx SINE Alu -4 308 1 2310 232 36 62 chr1 80062275 80062592 -162601761 - L1ME2 LINE L1 -849 5315 4991 1995 126 0 7 chr1 80062594 80062905 -162601448 - AluSx SINE Alu 0 311 3 360 231 41 62 chr1 80062911 80063059 -162601294 - L1MA9 LINE L1 0 6291 6151 207 0 0 0 chr1 80063078 80063101 -162601252 + (T)n Simple_repeat Simple_repeat 1 23 0 311 211 13 0 chr1 80063182 80063258 -162601095 - L1ME2 LINE L1 -3057 3089 3013 2315 232 56 5 chr1 80063259 80063900 -162600453 + L1M4 LINE L1 4730 5403 -743 201 121 0 0 chr1 80063925 80063958 -162600395 + (TCC)n Simple_repeat Simple_repeat 1 33 0 1959 156 0 7 chr1 80063970 80064265 -162600088 - AluJb SINE Alu -16 296 4 406 194 87 10 chr1 80064466 80064569 -162599784 - Charlie1 DNA MER1_type -1089 1672 1562 5023 38 2 7 chr1 80064571 80065181 -162599172 - L1PA4 LINE L1 -3 6152 5546 2234 15 0 0 chr1 80065181 80065447 -162598906 + L1PA4 LINE L1 5275 5540 -615 361 250 20 20 chr1 80065447 80065547 -162598806 - Charlie1 DNA MER1_type -1187 1574 1475 403 241 75 85 chr1 80065547 80065746 -162598607 + MIR SINE MIR 49 245 -17 2695 42 0 6 chr1 80065812 80066142 -162598211 - L1PA5 LINE L1 -3 6151 5824 2245 231 33 16 chr1 80066149 80066809 -162597544 - L1M4 LINE L1 -2820 3326 2652 2464 67 0 13 chr1 80066809 80067122 -162597231 - AluY SINE Alu -2 309 1 2245 231 33 16 chr1 80067122 80067167 -162597186 - L1M4 LINE L1 -3494 2652 2609 1107 105 13 7 chr1 80067176 80067328 -162597025 + AluSq SINE Alu 2 154 -159 4114 161 29 54 chr1 80067448 80067761 -162596592 + L1MC1 LINE L1 5159 5478 -855 1981 155 0 7 chr1 80067761 80068058 -162596295 - AluJb SINE Alu -17 295 1 4114 161 29 54 chr1 80068058 80068279 -162596074 + L1MC1 LINE L1 5478 5703 -630 1893 151 0 22 chr1 80068279 80068596 -162595757 + AluSx SINE Alu 3 312 0 4114 161 29 54 chr1 80068596 80069156 -162595197 + L1MC1 LINE L1 5703 6160 -173 4771 171 40 46 chr1 80069156 80069303 -162595050 + ERVL LTR ERVL 2297 2443 -3321 735 158 7 50 chr1 80069303 80069442 -162594911 + FLAM_C SINE Alu 1 133 0 4771 171 40 46 chr1 80069442 80070265 -162594088 + ERVL LTR ERVL 2443 3261 -2503 254 364 18 0 chr1 80070839 80070949 -162593404 + MARNA DNA Mariner 56 167 -419 962 233 88 0 chr1 80070988 80071203 -162593150 - MIR SINE MIR -21 241 8 569 269 63 11 chr1 80071205 80071380 -162592973 - MARNA DNA Mariner -269 317 134 738 267 12 0 chr1 80071489 80071654 -162592699 - MIR SINE MIR -88 174 8 628 276 71 30 chr1 80071670 80071938 -162592415 - MARNA DNA Mariner -293 293 15 713 161 0 8 chr1 80072147 80072271 -162592082 - FLAM_C SINE Alu -17 126 4 407 282 0 10 chr1 80072433 80072536 -162591817 - L2 LINE L2 0 3272 3171 1468 205 43 35 chr1 80072882 80073253 -162591100 - MLT1A2 LTR MaLR 0 374 1 21 57 0 0 chr1 80073767 80073802 -162590551 + AT_rich Low_complexity Low_complexity 1 35 0 231 186 0 0 chr1 80073899 80073942 -162590411 - L2 LINE L2 0 3313 3271 2243 93 3 10 chr1 80074039 80074340 -162590013 - AluSc SINE Alu -10 299 1 231 146 0 0 chr1 80075062 80075103 -162589250 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 700 194 0 8 chr1 80075103 80075419 -162588934 - FLAM_A SINE Alu 0 315 1 488 16 0 16 chr1 80076177 80076239 -162588114 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 275 405 36 0 chr1 80076246 80076357 -162587996 + L2 LINE L2 3156 3270 -2 25 0 0 0 chr1 80077118 80077143 -162587210 + AT_rich Low_complexity Low_complexity 1 25 0 993 139 8 118 chr1 80077958 80078203 -162586150 + L1MB8 LINE L1 5952 6169 -9 2350 83 15 0 chr1 80078605 80078942 -162585411 - L1MA2 LINE L1 0 6304 5963 733 166 13 161 chr1 80079267 80079526 -162584827 + MER20 DNA MER1_type 4 218 -1 6604 247 53 13 chr1 80079570 80080430 -162583923 - L1M4 LINE L1 -1923 4223 3398 1718 174 0 33 chr1 80080430 80080602 -162583751 - AluJo SINE Alu -11 301 125 201 47 70 0 chr1 80080602 80080645 -162583708 + T-rich Low_complexity Low_complexity 3 48 0 1903 143 0 14 chr1 80080645 80080931 -162583422 - AluSx SINE Alu -30 282 1 1718 174 0 33 chr1 80080931 80081056 -162583297 - AluJo SINE Alu -185 127 13 6604 247 53 13 chr1 80081056 80082229 -162582124 - L1M4 LINE L1 -2748 3398 2110 637 284 116 13 chr1 80082248 80082473 -162581880 + LTR16A LTR ERVL 203 450 0 390 244 154 4 chr1 80082578 80082812 -162581541 + L1ME LINE L1 5031 5299 -847 343 299 55 28 chr1 80082839 80083056 -162581297 + L1ME LINE L1 5349 5571 -591 431 345 28 43 chr1 80083089 80083344 -162581009 - L3 LINE CR1 -75 1502 1252 511 207 21 71 chr1 80083914 80084054 -162580299 - FLAM_A SINE Alu 0 133 1 1986 151 3 0 chr1 80084826 80085117 -162579236 + AluSx SINE Alu 1 292 -20 2782 16 0 6 chr1 80085943 80086257 -162578096 + AluYb8 SINE Alu 1 312 -6 309 95 0 0 chr1 80086281 80086323 -162578030 - MLT2D LTR ERVL -7 390 349 1428 164 69 101 chr1 80086384 80086623 -162577730 - MLT2D LTR ERVL -48 366 142 9510 23 0 0 chr1 80086623 80088516 -162575837 + L1PA3 LINE L1 4262 6155 0 1428 164 69 101 chr1 80088516 80088654 -162575699 - MLT2D LTR ERVL -272 142 1 21 71 0 0 chr1 80089565 80089607 -162574746 + AT_rich Low_complexity Low_complexity 1 42 0 451 234 99 126 chr1 80089682 80090025 -162574328 + L1MC/D LINE L1 5263 5589 -532 2230 122 3 0 chr1 80090025 80090337 -162574016 + AluSq SINE Alu 1 313 0 451 234 99 126 chr1 80090337 80090510 -162573843 + L1MC/D LINE L1 5589 5765 -356 24 32 0 0 chr1 80090593 80090624 -162573729 + AT_rich Low_complexity Low_complexity 1 31 0 639 238 7 180 chr1 80090632 80091043 -162573310 + L2 LINE L2 2970 3309 -4 212 191 24 0 chr1 80091713 80091755 -162572598 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 230 250 96 0 chr1 80091853 80091905 -162572448 + L2 LINE L2 3210 3266 -6 2239 87 27 7 chr1 80092488 80092787 -162571566 - AluSq SINE Alu -8 305 1 34 55 0 0 chr1 80092998 80093053 -162571300 + AT_rich Low_complexity Low_complexity 1 55 0 31 26 0 0 chr1 80093297 80093335 -162571018 + AT_rich Low_complexity Low_complexity 1 38 0 1814 193 0 0 chr1 80093827 80094132 -162570221 - AluJo SINE Alu -7 305 1 333 309 15 18 chr1 80094201 80094427 -162569926 + L1ME3 LINE L1 5691 5913 -249 351 0 0 0 chr1 80094647 80094686 -162569667 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 50 0 0 chr1 80095222 80095262 -162569091 + AT_rich Low_complexity Low_complexity 1 40 0 657 221 0 8 chr1 80095262 80095389 -162568964 - FLAM_C SINE Alu -17 126 1 251 156 169 78 chr1 80096010 80096087 -162568266 - L2 LINE L2 0 3313 3230 208 188 174 87 chr1 80096088 80096157 -162568196 - L2 LINE L2 -9 3304 3230 2263 93 0 3 chr1 80096747 80097037 -162567316 + AluSc SINE Alu 1 289 -20 21 36 0 0 chr1 80097409 80097437 -162566916 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chr1 80098720 80098766 -162565587 + (CA)n Simple_repeat Simple_repeat 2 47 0 342 286 10 108 chr1 80099162 80099365 -162564988 - MIR SINE MIR -42 220 38 254 308 32 70 chr1 80099515 80099671 -162564682 + L2 LINE L2 2910 3059 -213 593 215 51 57 chr1 80100433 80100610 -162563743 + L2 LINE L2 3138 3313 0 23 33 0 0 chr1 80100665 80100695 -162563658 + AT_rich Low_complexity Low_complexity 1 30 0 216 189 0 0 chr1 80100959 80100996 -162563357 + L2 LINE L2 3256 3292 -21 29 60 0 0 chr1 80101673 80101723 -162562630 + AT_rich Low_complexity Low_complexity 1 50 0 5161 139 53 37 chr1 80101765 80102782 -162561571 - L1MA9 LINE L1 0 6312 5280 577 246 148 84 chr1 80103055 80103413 -162560940 - L2 LINE L2 -484 2830 2450 518 256 63 68 chr1 80103803 80104010 -162560343 - MIR SINE MIR -3 259 54 1301 269 46 30 chr1 80104335 80104425 -162559928 - MLT1I LTR MaLR -6 403 316 7765 16 2 2 chr1 80104425 80105777 -162558576 - L1PA3 LINE L1 0 6155 4802 1301 269 46 30 chr1 80105777 80106054 -162558299 - MLT1I LTR MaLR -93 316 30 380 291 8 0 chr1 80106113 80106230 -162558123 + MER103 DNA DNA 3 120 -46 237 196 0 0 chr1 80106352 80106408 -162557945 + GA-rich Low_complexity Low_complexity 1 56 0 355 254 172 8 chr1 80106539 80106661 -162557692 - MIR SINE MIR -13 249 108 1487 142 146 7 chr1 80106672 80106983 -162557370 + MLT1A1 LTR MaLR 18 428 0 212 275 14 0 chr1 80107220 80107289 -162557064 - L2 LINE L2 -534 2780 2711 203 297 31 0 chr1 80107320 80107384 -162556969 - MIR3 SINE MIR -30 178 113 500 333 114 0 chr1 80107923 80108187 -162556166 + L2 LINE L2 2398 2691 -623 2377 80 0 0 chr1 80108723 80109049 -162555304 - AluY SINE Alu 0 311 1 284 224 119 119 chr1 80109086 80109220 -162555133 - MIR SINE MIR -82 180 47 296 230 109 115 chr1 80109277 80109348 -162555005 - MIR SINE MIR -74 188 118 864 224 191 12 chr1 80109348 80109621 -162554732 - AluSg SINE Alu 0 316 1 296 230 109 115 chr1 80109621 80109713 -162554640 - MIR SINE MIR -144 118 25 207 0 0 0 chr1 80111147 80111170 -162553183 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1621 173 41 0 chr1 80111175 80111446 -162552907 - AluJo SINE Alu -30 282 1 2086 138 32 32 chr1 80111468 80111875 -162552478 - L1MA8 LINE L1 -3 6288 5882 237 309 62 0 chr1 80112709 80112790 -162551563 + MIR3 SINE MIR 77 162 -46 2650 137 92 79 chr1 80113671 80113838 -162550515 - MER4A LTR ERV1 0 664 501 2012 118 36 0 chr1 80113838 80114118 -162550235 - AluSc SINE Alu -19 290 1 2650 137 92 79 chr1 80114118 80114606 -162549747 - MER4A LTR ERV1 -163 501 1 3835 32 2 52 chr1 80115007 80115511 -162548842 + L1PA5 LINE L1 5676 6154 0 425 236 75 85 chr1 80115577 80115776 -162548577 - MIR SINE MIR -17 245 49 404 230 20 20 chr1 80115776 80115876 -162548477 + Charlie1 DNA MER1_type 1475 1574 -1187 2308 15 0 0 chr1 80115876 80116150 -162548203 - L1PA4 LINE L1 -615 5540 5267 5134 31 2 2 chr1 80116150 80116752 -162547601 + L1PA4 LINE L1 5546 6155 0 4256 171 93 61 chr1 80116754 80117715 -162546638 + Charlie1 DNA MER1_type 1562 2568 -193 1969 128 36 0 chr1 80117715 80117996 -162546357 - AluSx SINE Alu -21 291 1 4256 171 93 61 chr1 80117996 80118196 -162546157 + Charlie1 DNA MER1_type 2568 2760 -1 331 245 95 0 chr1 80118196 80118315 -162546038 - L1M3 LINE L1 -368 5800 5669 41 66 0 0 chr1 80118383 80118459 -162545894 + AT_rich Low_complexity Low_complexity 1 76 0 626 60 30 38 chr1 80118735 80118868 -162545485 + (TCTA)n Simple_repeat Simple_repeat 1 132 0 905 203 26 16 chr1 80118881 80119073 -162545280 + MLT1J1 LTR MaLR 1 194 -252 582 306 118 22 chr1 80119301 80120611 -162543742 - L1M3 LINE L1 -749 5397 4141 427 254 154 39 chr1 80120614 80120874 -162543479 - L2 LINE L2 0 3313 3024 1479 116 22 0 chr1 80120888 80121006 -162543347 - MER30 DNA MER1_type 0 230 116 354 23 0 0 chr1 80121006 80121049 -162543304 + (TG)n Simple_repeat Simple_repeat 2 44 0 1479 116 22 0 chr1 80121049 80121155 -162543198 - MER30 DNA MER1_type -114 116 1 24 91 0 0 chr1 80121261 80121327 -162543026 + AT_rich Low_complexity Low_complexity 1 66 0 277 303 61 25 chr1 80121414 80121612 -162542741 - L1M3 LINE L1 -2250 3896 3692 420 241 53 8 chr1 80121948 80122081 -162542272 - L1M3 LINE L1 -2456 3690 3552 24 32 0 0 chr1 80122130 80122161 -162542192 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr1 80122208 80122236 -162542117 + AT_rich Low_complexity Low_complexity 1 28 0 243 282 129 43 chr1 80123030 80123193 -162541160 - MIR SINE MIR -19 243 67 191 286 9 86 chr1 80123385 80123490 -162540863 - L2 LINE L2 -1447 1867 1771 343 384 60 5 chr1 80124114 80124330 -162540023 + L2 LINE L2 2221 2448 -866 543 256 64 59 chr1 80124358 80124577 -162539776 - MIR SINE MIR -16 246 27 43872 38 3 9 chr1 80124893 80131073 -162533280 - L1PA4 LINE L1 0 6155 13 246 32 0 0 chr1 80134633 80134664 -162529689 + (CA)n Simple_repeat Simple_repeat 2 32 0 294 298 124 29 chr1 80135327 80135602 -162528751 + L2 LINE L2 2814 3114 -158 769 307 46 17 chr1 80135803 80136044 -162528309 - MIR SINE MIR -1 261 14 207 235 59 0 chr1 80136163 80136214 -162528139 + L2 LINE L2 3218 3271 -1 525 273 153 44 chr1 80136298 80136709 -162527644 - LTR33 LTR ERVL 0 521 66 399 301 49 12 chr1 80137485 80137648 -162526705 + MIR SINE MIR 94 262 0 487 176 56 19 chr1 80137871 80137979 -162526374 - MLT1K LTR MaLR -137 451 340 411 326 103 11 chr1 80138181 80138356 -162525997 - MIR SINE MIR -51 211 21 2402 141 48 33 chr1 80138664 80139084 -162525269 + MSTB LTR MaLR 1 426 0 27 0 0 0 chr1 80139203 80139230 -162525123 + AT_rich Low_complexity Low_complexity 1 27 0 314 213 299 39 chr1 80139484 80139611 -162524742 - MLT1K LTR MaLR -16 572 413 285 51 0 0 chr1 80141652 80141691 -162522662 + (TG)n Simple_repeat Simple_repeat 2 40 0 334 271 9 56 chr1 80142206 80142313 -162522040 - MIR SINE MIR -50 212 111 232 267 41 48 chr1 80142806 80142952 -162521401 - HAL1b LINE L1 -8 1340 1196 239 319 72 18 chr1 80142988 80143154 -162521199 - L1ME LINE L1 -253 5868 5694 596 271 88 37 chr1 80143154 80143449 -162520904 + MLT1J LTR MaLR 2 311 -200 1843 156 7 16 chr1 80143654 80143961 -162520392 + AluSx SINE Alu 1 304 -8 1775 106 0 0 chr1 80144057 80144311 -162520042 - L1PA14 LINE L1 0 6161 5908 27 0 0 0 chr1 80144980 80145007 -162519346 + AT_rich Low_complexity Low_complexity 1 27 0 1123 108 0 0 chr1 80145431 80145588 -162518765 + AluSg/x SINE Alu 154 310 0 286 250 59 0 chr1 80146107 80146175 -162518178 - L2 LINE L2 -1 3312 3241 11254 105 24 33 chr1 80146414 80146994 -162517359 + Tigger1 DNA MER2_type 1 584 -1834 1877 167 6 13 chr1 80146994 80147305 -162517048 - AluJb SINE Alu 0 312 4 11254 105 24 33 chr1 80147305 80148197 -162516156 + Tigger1 DNA MER2_type 584 1458 -960 1406 127 19 78 chr1 80148197 80148504 -162515849 - L1MA4 LINE L1 -5 6295 6007 11254 105 24 33 chr1 80148504 80148780 -162515573 + Tigger1 DNA MER2_type 1458 1735 -683 1507 127 27 0 chr1 80148781 80149041 -162515312 + L1MA5A LINE L1 6026 6292 -5 4250 117 10 44 chr1 80149065 80149415 -162514938 + Tigger1 DNA MER2_type 1735 2050 -368 1530 193 30 10 chr1 80149415 80149710 -162514643 - AluJb SINE Alu -11 301 1 4250 117 10 44 chr1 80149710 80150067 -162514286 + Tigger1 DNA MER2_type 2050 2418 0 1353 248 54 83 chr1 80150824 80151390 -162512963 - L2 LINE L2 0 3313 2764 310 271 73 31 chr1 80151458 80151650 -162512703 - L1ME LINE L1 -646 5518 5319 308 297 64 47 chr1 80151739 80152035 -162512318 - L1ME LINE L1 -963 5183 4883 244 309 135 24 chr1 80152489 80152615 -162511738 + L2 LINE L2 3132 3271 -1 391 315 157 6 chr1 80153083 80153194 -162511159 + MIR SINE MIR 57 150 -112 1203 231 100 6 chr1 80153194 80153505 -162510848 - MER58B DNA MER1_type 0 341 2 391 315 157 6 chr1 80153505 80153571 -162510782 + MIR SINE MIR 150 261 -1 24 0 0 0 chr1 80153840 80153864 -162510489 + AT_rich Low_complexity Low_complexity 1 24 0 250 291 58 29 chr1 80154513 80154616 -162509737 + MIR SINE MIR 96 201 -61 22 0 0 0 chr1 80155339 80155361 -162508992 + AT_rich Low_complexity Low_complexity 1 22 0 394 236 50 37 chr1 80155915 80156076 -162508277 + L1ME4a LINE L1 5715 5877 -244 1826 148 28 0 chr1 80156962 80157246 -162507107 - AluJo SINE Alu -20 292 1 1793 175 0 7 chr1 80157248 80157545 -162506808 - AluJo SINE Alu -17 295 1 32 0 0 0 chr1 80157586 80157618 -162506735 + AT_rich Low_complexity Low_complexity 1 32 0 436 286 0 0 chr1 80158047 80158180 -162506173 + (TG)n Simple_repeat Simple_repeat 1 133 0 248 343 89 14 chr1 80159166 80159312 -162505041 - MIR SINE MIR -19 243 87 272 355 82 22 chr1 80159776 80159959 -162504394 - MIR SINE MIR -14 248 55 357 43 0 0 chr1 80161143 80161190 -162503163 + (CA)n Simple_repeat Simple_repeat 2 48 0 222 37 0 0 chr1 80161189 80161216 -162503137 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 209 217 0 0 chr1 80161723 80161769 -162502584 + A-rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr1 80162041 80162075 -162502278 + AT_rich Low_complexity Low_complexity 1 34 0 236 180 0 40 chr1 80163909 80163959 -162500394 - MIR3 SINE MIR -6 202 155 470 288 186 9 chr1 80164452 80164667 -162499686 + MIR SINE MIR 10 262 0 330 161 123 25 chr1 80164947 80165028 -162499325 - MIR SINE MIR -55 153 65 24 85 0 0 chr1 80165279 80165338 -162499015 + AT_rich Low_complexity Low_complexity 1 59 0 26 50 0 0 chr1 80165992 80166032 -162498321 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr1 80166560 80166592 -162497761 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr1 80166646 80166675 -162497678 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr1 80167699 80167725 -162496628 + AT_rich Low_complexity Low_complexity 1 26 0 2759 29 0 0 chr1 80168442 80168753 -162495600 + AluY SINE Alu 1 311 0 469 230 14 58 chr1 80168753 80168892 -162495461 + MER94 DNA DNA 2 134 0 2325 87 3 3 chr1 80169144 80169454 -162494899 + AluY SINE Alu 1 310 -1 23 0 0 0 chr1 80170791 80170814 -162493539 + AT_rich Low_complexity Low_complexity 1 23 0 265 241 98 71 chr1 80171071 80171183 -162493170 + LTR33A LTR ERVL 60 174 -349 693 266 4 86 chr1 80172117 80172395 -162491958 + MIR SINE MIR 6 260 -2 339 291 61 61 chr1 80173477 80173642 -162490711 - MIR SINE MIR -50 212 48 21 0 0 0 chr1 80173656 80173677 -162490676 + AT_rich Low_complexity Low_complexity 1 21 0 918 118 0 0 chr1 80173677 80173796 -162490557 - FLAM_C SINE Alu -24 119 1 27 0 0 0 chr1 80173902 80173929 -162490424 + AT_rich Low_complexity Low_complexity 1 27 0 245 295 51 13 chr1 80174385 80174463 -162489890 + MER5B DNA MER1_type 18 98 -80 265 231 83 0 chr1 80174512 80174668 -162489685 + (TA)n Simple_repeat Simple_repeat 2 170 0 * 328 206 0 76 chr1 80174555 80174739 -162489614 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 202 102 74 46 chr1 80174784 80174892 -162489461 + (TTATA)n Simple_repeat Simple_repeat 4 114 0 22 0 0 0 chr1 80174903 80174925 -162489428 + AT_rich Low_complexity Low_complexity 1 22 0 386 212 34 34 chr1 80174937 80175116 -162489237 + (TA)n Simple_repeat Simple_repeat 1 179 0 22 0 0 0 chr1 80175256 80175278 -162489075 + AT_rich Low_complexity Low_complexity 1 22 0 1755 139 45 107 chr1 80175290 80175385 -162488968 + L1MA8 LINE L1 5870 5969 -322 1725 146 4 0 chr1 80175385 80175681 -162488672 + AluSx SINE Alu 34 330 0 1755 139 45 107 chr1 80175681 80176029 -162488324 + L1MA8 LINE L1 5969 6288 -3 2229 112 0 3 chr1 80176062 80176366 -162487987 + AluSx SINE Alu 6 308 -4 186 241 0 56 chr1 80177893 80177947 -162486406 - MIR SINE MIR -63 145 95 290 262 36 12 chr1 80178535 80178619 -162485734 - MIR SINE MIR -128 134 49 25 65 0 0 chr1 80179304 80179350 -162485003 + AT_rich Low_complexity Low_complexity 1 46 0 479 138 0 12 chr1 80179806 80179886 -162484467 - MADE1 DNA Mariner 0 80 2 718 309 95 16 chr1 80179936 80180427 -162483926 - L2 LINE L2 -237 3035 2499 2292 109 0 0 chr1 80180902 80181206 -162483147 + AluSx SINE Alu 1 304 -8 3913 137 0 3 chr1 80181886 80182514 -162481839 - L1PA13 LINE L1 -8 6155 5530 504 204 76 13 chr1 80182949 80182965 -162481388 - L1MA10 LINE L1 0 6334 6319 2662 216 114 42 chr1 80182965 80184009 -162480344 - L1ME1 LINE L1 -5 6230 5127 929 183 0 0 chr1 80184017 80184170 -162480183 - FRAM SINE Alu -13 163 11 1541 209 9 58 chr1 80184180 80184645 -162479708 - L1ME1 LINE L1 -1089 5126 4685 734 182 25 13 chr1 80184645 80184804 -162479549 + LTR41 LTR ERVL 11 171 -602 315 280 57 72 chr1 80185014 80185207 -162479146 + LTR41 LTR ERVL 237 426 -347 859 183 125 0 chr1 80185216 80185424 -162478929 - L1ME1 LINE L1 -6128 268 35 22 35 0 0 chr1 80186546 80186575 -162477778 + AT_rich Low_complexity Low_complexity 1 29 0 268 285 104 56 chr1 80187267 80187411 -162476942 - L2 LINE L2 0 3313 3163 320 291 23 0 chr1 80188396 80188482 -162475871 + L2 LINE L2 3185 3272 0 977 195 122 126 chr1 80188498 80189148 -162475205 - L2 LINE L2 -37 3276 2628 2027 154 0 0 chr1 80189296 80189595 -162474758 + AluJb SINE Alu 1 299 -13 1725 176 7 0 chr1 80190268 80190557 -162473796 - AluJo SINE Alu -19 293 3 236 222 62 25 chr1 80191243 80191324 -162473029 + MLT1K LTR MaLR 487 570 -18 705 289 39 10 chr1 80192396 80192600 -162471753 - MIR SINE MIR -52 210 1 306 257 105 67 chr1 80192979 80193084 -162471269 - L2 LINE L2 -4 3268 3160 310 337 117 25 chr1 80193152 80193348 -162471005 - MIR SINE MIR -28 234 21 200 352 46 9 chr1 80193910 80194018 -162470335 - L2 LINE L2 -193 3079 2968 183 245 113 19 chr1 80194437 80194490 -162469863 - MIR SINE MIR -94 168 111 601 380 18 0 chr1 80194579 80194808 -162469545 + L3 LINE CR1 398 630 -947 488 280 270 15 chr1 80194864 80195064 -162469289 + MIR SINE MIR 12 262 0 331 309 26 46 chr1 80195126 80195278 -162469075 + L3 LINE CR1 780 928 -649 403 299 85 18 chr1 80196191 80196355 -162467998 + MIR3 SINE MIR 28 202 -6 567 316 15 11 chr1 80196666 80196878 -162467475 + MIR SINE MIR 10 220 -42 29 70 0 0 chr1 80197210 80197267 -162467086 + AT_rich Low_complexity Low_complexity 1 57 0 251 333 59 29 chr1 80197267 80197369 -162466984 - L2 LINE L2 -25 3247 3143 280 278 0 82 chr1 80197561 80197658 -162466695 - MIR SINE MIR -138 124 36 527 316 18 81 chr1 80197674 80197946 -162466407 - MIR SINE MIR 0 262 8 218 274 0 0 chr1 80198397 80198448 -162465905 + A-rich Low_complexity Low_complexity 5 55 0 382 291 61 34 chr1 80198812 80198960 -162465393 - MIR SINE MIR -31 231 80 429 320 88 11 chr1 80199551 80199732 -162464621 + MIR SINE MIR 6 200 -62 28 0 0 0 chr1 80200989 80201017 -162463336 + AT_rich Low_complexity Low_complexity 1 28 0 464 276 52 0 chr1 80201161 80201295 -162463058 - MIR SINE MIR -25 237 97 643 270 60 37 chr1 80201400 80201615 -162462738 - MIR SINE MIR -9 253 34 1516 63 4 13 chr1 80201757 80201996 -162462357 + L1PA7 LINE L1 5939 6172 0 407 295 164 24 chr1 80202710 80202917 -162461436 - MIR SINE MIR -21 241 6 579 233 29 69 chr1 80202979 80203224 -162461129 + MER106A DNA MER1_type 1 235 -1 448 295 34 26 chr1 80203305 80203661 -162460692 + HsTC2 DNA Tc2 506 891 -1007 222 137 65 13 chr1 80204529 80204682 -162459671 + (TA)n Simple_repeat Simple_repeat 1 161 0 21 36 0 0 chr1 80204683 80204711 -162459642 + AT_rich Low_complexity Low_complexity 1 28 0 570 187 43 37 chr1 80204711 80204898 -162459455 + MER69 DNA AcHobo 1601 1788 -738 1913 84 0 8 chr1 80204950 80205212 -162459141 - L1PA8 LINE L1 0 6172 5913 195 307 27 0 chr1 80205985 80206060 -162458293 + MIR SINE MIR 185 261 -1 517 296 169 0 chr1 80206906 80207095 -162457258 - MIR SINE MIR -18 244 24 219 69 0 0 chr1 80207099 80207128 -162457225 + (CA)n Simple_repeat Simple_repeat 2 30 0 327 137 20 78 chr1 80207277 80207430 -162456923 + (TA)n Simple_repeat Simple_repeat 2 145 0 225 154 0 0 chr1 80207459 80207498 -162456855 + (TG)n Simple_repeat Simple_repeat 2 40 0 411 325 63 0 chr1 80208527 80208653 -162455700 - MIR SINE MIR -75 187 54 667 311 0 0 chr1 80208754 80208937 -162455416 + MIR SINE MIR 61 243 -19 1439 180 40 18 chr1 80210130 80210457 -162453896 + L1MA5 LINE L1 5967 6300 0 319 259 19 73 chr1 80210576 80210613 -162453740 + MIR SINE MIR 31 68 -140 2283 104 0 0 chr1 80210613 80210910 -162453443 - AluSx SINE Alu -11 301 5 319 259 19 73 chr1 80210910 80211012 -162453341 + MIR SINE MIR 68 163 -45 23 0 0 0 chr1 80211066 80211089 -162453264 + AT_rich Low_complexity Low_complexity 1 23 0 784 244 70 12 chr1 80211109 80211351 -162453002 + L2 LINE L2 3058 3313 0 291 355 125 30 chr1 80211429 80211894 -162452459 - L2 LINE L2 -2493 821 313 2530 50 0 0 chr1 80212325 80212623 -162451730 + AluY SINE Alu 1 298 -13 23 54 0 0 chr1 80212662 80212699 -162451654 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 80213735 80213756 -162450597 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 80216163 80216184 -162448169 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr1 80217716 80217746 -162446607 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 404 229 3 24 chr1 80217746 80217874 -162446479 - FLAM SINE Alu -17 116 46 443 268 30 30 chr1 80217874 80218042 -162446311 + MER104 DNA Tc2 8 175 -5 2347 84 0 7 chr1 80218828 80219124 -162445229 - AluSg SINE Alu -16 294 1 411 263 117 7 chr1 80223230 80223367 -162440986 - MIR SINE MIR -32 230 79 604 276 103 5 chr1 80224792 80224977 -162439376 + MIR SINE MIR 13 215 -47 744 206 57 36 chr1 80225130 80225324 -162439029 + MER3 DNA MER1_type 10 207 -2 246 250 0 0 chr1 80225283 80225339 -162439014 - MER3 DNA MER1_type -119 90 35 * 678 206 98 31 chr1 80226775 80226969 -162437384 + MIR SINE MIR 8 214 -48 1988 114 22 41 chr1 80226986 80227302 -162437051 + AluSx SINE Alu 1 310 -2 198 143 0 0 chr1 80228151 80228186 -162436167 + (A)n Simple_repeat Simple_repeat 1 35 0 29 0 0 0 chr1 80229907 80229936 -162434417 + AT_rich Low_complexity Low_complexity 1 29 0 246 436 54 0 chr1 80231620 80231769 -162432584 - L2 LINE L2 -8 3264 3108 201 338 44 0 chr1 80233560 80233628 -162430725 + L2 LINE L2 3170 3240 -32 475 283 69 6 chr1 80234773 80234946 -162429407 + MIR SINE MIR 23 206 -56 1972 136 26 0 chr1 80235201 80235549 -162428804 + AluJb SINE Alu 1 356 0 316 215 127 0 chr1 80236108 80236187 -162428166 + MLT1J LTR MaLR 1 89 -422 345 286 17 17 chr1 80236371 80236490 -162427863 + MLT1J LTR MaLR 378 496 -15 1652 167 11 11 chr1 80236843 80237149 -162427204 - AluJo SINE Alu 0 306 1 22 0 0 0 chr1 80237559 80237581 -162426772 + AT_rich Low_complexity Low_complexity 1 22 0 2246 89 7 0 chr1 80242547 80242838 -162421515 + AluSg SINE Alu 1 293 -17 240 111 0 0 chr1 80243198 80243234 -162421119 + (CA)n Simple_repeat Simple_repeat 2 37 0 8460 59 5 1 chr1 80244210 80246086 -162418267 + L1PA6 LINE L1 4301 6179 0 251 345 181 11 chr1 80246374 80246551 -162417802 - MIR3 SINE MIR 0 208 2 277 67 0 22 chr1 80247093 80247138 -162417215 + MADE1 DNA Mariner 3 46 -34 289 252 144 50 chr1 80247893 80248032 -162416321 - Charlie8 DNA MER1_type -2218 199 48 286 105 0 0 chr1 80250765 80250803 -162413550 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 602 90 18 18 chr1 80250803 80251091 -162413262 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 1619 200 6 16 chr1 80251091 80251406 -162412947 - AluJo SINE Alu 0 600 1 208 323 96 45 chr1 80251748 80252104 -162412249 + L2 LINE L2 2587 2960 -354 1807 168 0 27 chr1 80253852 80254144 -162410209 - AluJo SINE Alu -24 288 5 341 219 90 84 chr1 80254247 80254402 -162409951 - L2 LINE L2 0 3313 3158 5295 122 114 52 chr1 80254405 80255521 -162408832 + Tigger3b DNA MER2_type 3 1187 -44 223 284 129 17 chr1 80255759 80255875 -162408478 - L2 LINE L2 -421 2893 2765 263 279 0 0 chr1 80256940 80257001 -162407352 - L2 LINE L2 -7 3306 3246 338 244 144 25 chr1 80258764 80258924 -162405429 - MIR SINE MIR -11 251 73 768 306 10 0 chr1 80259572 80259778 -162404575 + MIR SINE MIR 3 210 -52 632 268 30 83 chr1 80259885 80260150 -162404203 - MIR SINE MIR 0 262 12 224 191 0 21 chr1 80260613 80260660 -162403693 + L2 LINE L2 3262 3307 -6 226 321 18 18 chr1 80260721 80260830 -162403523 + MARNA DNA Mariner 79 187 -399 440 293 47 0 chr1 80261007 80261157 -162403196 - MIR SINE MIR -43 219 63 334 237 44 44 chr1 80261558 80261672 -162402681 - MIR SINE MIR -84 178 65 228 245 53 64 chr1 80261714 80261808 -162402545 + L3 LINE CR1 811 903 -674 388 324 41 7 chr1 80262079 80262224 -162402129 - MIR SINE MIR -79 183 34 558 314 159 13 chr1 80262244 80262616 -162401737 + L3 LINE CR1 217 642 -935 189 0 0 0 chr1 80262625 80262646 -162401707 + (CTCA)n Simple_repeat Simple_repeat 3 23 0 899 270 56 16 chr1 80262704 80263023 -162401330 + LTR16A LTR ERVL 1 332 -118 217 330 236 0 chr1 80263153 80263259 -162401094 + L3 LINE CR1 1306 1436 -141 854 278 80 37 chr1 80263508 80263997 -162400356 + MLT1J LTR MaLR 2 511 0 2040 146 0 0 chr1 80264892 80265193 -162399160 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr1 80268136 80268158 -162396195 + AT_rich Low_complexity Low_complexity 1 22 0 257 339 130 57 chr1 80268458 80268880 -162395473 - L2 LINE L2 -7 3265 2813 294 337 137 6 chr1 80269322 80269497 -162394856 - MIR SINE MIR -18 244 47 589 222 83 11 chr1 80269710 80269985 -162394368 - L1MA9 LINE L1 -38 6274 5942 864 108 17 0 chr1 80269985 80270105 -162394248 - AluSg/x SINE Alu -15 297 176 307 159 0 32 chr1 80270108 80270171 -162394182 - L1MA9 LINE L1 -365 5947 5887 382 342 70 42 chr1 80270200 80270612 -162393741 + L2 LINE L2 2633 3057 -256 253 286 9 36 chr1 80270682 80270794 -162393559 - MIR SINE MIR 0 262 154 929 87 7 0 chr1 80270867 80271005 -162393348 + MER30 DNA MER1_type 4 142 -88 238 218 18 0 chr1 80273143 80273198 -162391155 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 210 207 0 0 chr1 80273317 80273375 -162390978 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 417 20 0 0 chr1 80273615 80273665 -162390688 + (CA)n Simple_repeat Simple_repeat 2 51 0 743 160 179 0 chr1 80274436 80274592 -162389761 + MER3 DNA MER1_type 1 184 -25 203 339 15 0 chr1 80276595 80276660 -162387693 - L2 LINE L2 -1 3271 3206 903 163 6 18 chr1 80278446 80278612 -162385741 - FAM SINE Alu -11 164 1 243 209 264 11 chr1 80278837 80278928 -162385425 + MIR SINE MIR 13 126 -136 642 26 0 0 chr1 80279377 80279453 -162384900 + (GA)n Simple_repeat Simple_repeat 2 77 0 276 30 0 0 chr1 80279993 80280026 -162384327 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 906 10 0 0 chr1 80280144 80280247 -162384106 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 1945 148 4 0 chr1 80280247 80280525 -162383828 - AluSq SINE Alu -34 279 1 1003 262 33 4 chr1 80280960 80281204 -162383149 + MIR SINE MIR 2 252 -10 23 33 0 0 chr1 80281320 80281350 -162383003 + AT_rich Low_complexity Low_complexity 1 30 0 192 357 89 6 chr1 80281527 80281695 -162382658 + MIR SINE MIR 14 195 -67 416 198 73 21 chr1 80282651 80282747 -162381606 - MIR SINE MIR -68 140 40 4146 36 2 2 chr1 80282798 80283297 -162381056 + L1PA5 LINE L1 5651 6149 -5 206 357 35 50 chr1 80283499 80283757 -162380596 + L2 LINE L2 2723 2976 -338 181 385 0 0 chr1 80283923 80283975 -162380378 - L2 LINE L2 -11 3261 3210 261 83 0 0 chr1 80284890 80284926 -162379427 + (A)n Simple_repeat Simple_repeat 1 36 0 2084 133 3 7 chr1 80287499 80287793 -162376560 + AluSx SINE Alu 1 293 -19 262 331 113 6 chr1 80288868 80289028 -162375325 + L2 LINE L2 2101 2277 -1037 2158 169 9 21 chr1 80289194 80289613 -162374740 + L1MB5 LINE L1 5748 6161 -13 294 284 164 0 chr1 80290143 80290277 -162374076 - MER112 DNA MER1_type -12 248 93 486 122 100 22 chr1 80290314 80290404 -162373949 + THE1C LTR MaLR 1 97 -278 448 143 0 0 chr1 80342523 80342600 -162321753 + AluSp/q SINE Alu 229 305 -8 25 0 0 0 chr1 80342745 80342770 -162321583 + AT_rich Low_complexity Low_complexity 1 25 0 1529 211 0 4 chr1 80343047 80343326 -162321027 + AluJo SINE Alu 11 288 -24 22 0 0 0 chr1 80343327 80343349 -162321004 + AT_rich Low_complexity Low_complexity 1 22 0 211 100 0 60 chr1 80344593 80344643 -162319710 + (TTTCC)n Simple_repeat Simple_repeat 4 50 0 767 37 9 37 chr1 80344716 80344824 -162319529 - L1PA7 LINE L1 0 6154 6050 353 229 73 92 chr1 80346007 80346225 -162318128 + MER58C DNA MER1_type 2 215 0 195 430 35 0 chr1 80346441 80346583 -162317770 - L2 LINE L2 -372 2942 2796 332 289 107 0 chr1 80346700 80346821 -162317532 - L2 LINE L2 -1368 1946 1813 564 315 154 7 chr1 80347545 80347987 -162316366 - L1MEc LINE L1 -3616 3028 2563 629 272 22 13 chr1 80348207 80348431 -162315922 - L1ME1 LINE L1 -5 6161 5936 1174 128 45 0 chr1 80348452 80348631 -162315722 + AluSq SINE Alu 1 187 -126 3127 64 0 26 chr1 80348637 80349092 -162315261 - L1P LINE L1 -2287 3859 3417 21 36 0 0 chr1 80350055 80350083 -162314270 + AT_rich Low_complexity Low_complexity 1 28 0 2701 20 0 3 chr1 80351038 80351344 -162313009 + AluYb8 SINE Alu 1 305 -13 819 221 19 77 chr1 80351344 80351719 -162312634 - L1MEc LINE L1 -5370 1172 820 288 320 16 0 chr1 80351901 80352026 -162312327 - L1MEc LINE L1 -5719 927 801 1030 75 37 14 chr1 80352239 80352691 -162311662 + HSATII Satellite Satellite 1 462 -14 1046 74 15 0 chr1 80352703 80352906 -162311447 + HSATII Satellite Satellite 1 206 -90 733 256 19 21 chr1 80353702 80354017 -162310336 - MER34C LTR ERV1 -158 427 70 2353 28 0 0 chr1 80354796 80355083 -162309270 + L1P2 LINE L1 5408 5694 -460 1494 198 10 38 chr1 80355314 80355628 -162308725 - AluJo SINE Alu -7 305 1 342 324 0 9 chr1 80355650 80355755 -162308598 + LTR67 LTR ERVL 49 152 -405 240 35 0 0 chr1 80355878 80355907 -162308446 + (TA)n Simple_repeat Simple_repeat 1 29 0 1745 117 99 4 chr1 80355907 80356180 -162308173 - AluSx SINE Alu -13 299 1 369 325 74 42 chr1 80356190 80356501 -162307852 - L2 LINE L2 -1072 2242 1922 668 143 9 0 chr1 80357196 80357308 -162307045 - AluSg/x SINE Alu -12 300 188 533 243 78 51 chr1 80357533 80357788 -162306565 + MLT1D LTR MaLR 206 505 0 264 312 51 51 chr1 80358148 80358286 -162306067 - MIR3 SINE MIR -62 146 9 2754 48 0 11 chr1 80358577 80358931 -162305422 + L1PA5 LINE L1 5805 6154 0 1297 245 104 13 chr1 80359234 80359687 -162304666 - MLT1D LTR MaLR 0 505 12 1699 123 8 4 chr1 80360068 80360312 -162304041 - AluSg SINE Alu -65 245 1 1212 209 50 28 chr1 80360321 80360374 -162303979 + MLT1D LTR MaLR 175 225 -280 1936 171 64 8 chr1 80360374 80360749 -162303604 - MSTD LTR MaLR 0 396 1 1212 209 50 28 chr1 80360749 80361016 -162303337 + MLT1D LTR MaLR 225 502 -3 1972 143 17 0 chr1 80361143 80361430 -162302923 + AluSx SINE Alu 1 292 -20 343 333 120 0 chr1 80361662 80361845 -162302508 + MIR SINE MIR 57 261 -1 609 267 148 29 chr1 80362123 80362467 -162301886 + MLT1K LTR MaLR 2 386 -202 1494 192 29 48 chr1 80362684 80362997 -162301356 + AluJb SINE Alu 1 307 -5 22 56 0 0 chr1 80363035 80363071 -162301282 + AT_rich Low_complexity Low_complexity 1 36 0 680 216 97 26 chr1 80363171 80363398 -162300955 + LTR48 LTR ERV1 543 785 -2 209 225 12 12 chr1 80363518 80363598 -162300755 + A-rich Low_complexity Low_complexity 3 82 0 2042 84 52 3 chr1 80363625 80363912 -162300441 + AluY SINE Alu 1 301 -10 634 196 30 24 chr1 80363912 80364080 -162300273 + L1M4 LINE L1 5181 5349 -797 44 0 0 0 chr1 80364189 80364233 -162300120 + AT_rich Low_complexity Low_complexity 1 44 0 1537 202 34 0 chr1 80364304 80364596 -162299757 + AluJb SINE Alu 1 302 -10 496 314 97 24 chr1 80365274 80365564 -162298789 - L1ME3A LINE L1 -10 6160 5850 23 0 0 0 chr1 80365603 80365626 -162298727 + AT_rich Low_complexity Low_complexity 1 23 0 2340 65 7 3 chr1 80365634 80365926 -162298427 + AluY SINE Alu 11 303 -8 335 269 104 50 chr1 80367840 80368022 -162296331 - MIR SINE MIR -21 241 50 415 359 26 43 chr1 80369753 80369987 -162294366 - MIR SINE MIR -21 241 12 361 281 35 35 chr1 80371431 80371581 -162292772 - MIR SINE MIR -69 193 45 184 340 0 0 chr1 80371978 80372028 -162292325 + MIR SINE MIR 156 205 -57 215 317 14 69 chr1 80373172 80373205 -162291148 - MIR SINE MIR -42 220 187 234 0 0 0 chr1 80373205 80373231 -162291122 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 886 44 18 0 chr1 80373231 80373344 -162291009 - L1PA5 LINE L1 -13 6141 6027 215 317 14 69 chr1 80373344 80373454 -162290899 - MIR SINE MIR -73 189 84 * 282 281 95 0 chr1 80373450 80373561 -162290792 + MER5A DNA MER1_type 23 167 -22 233 374 0 0 chr1 80373505 80373588 -162290765 - MER5A DNA MER1_type -100 89 7 * 495 202 60 105 chr1 80373994 80374261 -162290092 - MER112 DNA MER1_type -1 255 1 180 0 0 0 chr1 80374319 80374339 -162290014 + (TC)n Simple_repeat Simple_repeat 1 20 0 2314 62 0 13 chr1 80374461 80374790 -162289563 - AluY SINE Alu 0 311 1 275 371 86 35 chr1 80374960 80375554 -162288799 + L2 LINE L2 2612 3225 -47 294 306 10 31 chr1 80376368 80376466 -162287887 + MIR SINE MIR 35 130 -78 * 463 286 29 7 chr1 80376459 80376599 -162287754 + MIR SINE MIR 69 211 -51 1244 212 157 57 chr1 80376615 80376994 -162287359 - MER119 DNA MER1_type 0 583 147 2395 137 49 2 chr1 80376994 80377403 -162286950 + MSTA LTR MaLR 1 428 0 1244 212 157 57 chr1 80377403 80377494 -162286859 - MER119 DNA MER1_type -436 147 66 1463 136 16 5 chr1 80378419 80378685 -162285668 + L1PA14 LINE L1 5892 6157 -11 574 77 248 26 chr1 80378930 80379047 -162285306 - L1MD2 LINE L1 -20 6339 6197 2588 168 35 25 chr1 80379049 80379613 -162284740 + LTR27 LTR ERV1 5 644 -140 1680 222 42 16 chr1 80379623 80380074 -162284279 - L1MD2 LINE L1 -154 6205 5743 397 282 20 7 chr1 80380337 80380486 -162283867 + MER117 DNA MER1_type 4 154 -43 459 270 50 13 chr1 80380835 80380994 -162283359 - MIR SINE MIR -8 254 90 834 205 24 0 chr1 80381953 80382119 -162282234 - AluJb SINE Alu -9 303 134 2604 121 2 0 chr1 80382302 80382699 -162281654 + L1MC1 LINE L1 5509 5906 -427 800 196 0 0 chr1 80382699 80382886 -162281467 + FLAM_C SINE Alu 1 187 0 2354 132 39 25 chr1 80382890 80383189 -162281164 + L1MC1 LINE L1 5896 6204 -129 4569 189 22 85 chr1 80383189 80384222 -162280131 + LTR5 LTR ERVK 2 969 0 2354 132 39 25 chr1 80384222 80384353 -162280000 + L1MC1 LINE L1 6204 6332 -1 665 217 105 0 chr1 80384906 80385049 -162279304 + AluJo SINE Alu 2 159 -153 1044 111 29 0 chr1 80385049 80385220 -162279133 - L1MC1 LINE L1 -437 5896 5721 635 165 83 0 chr1 80385220 80385353 -162279000 + AluJo SINE Alu 168 311 -1 462 36 0 0 chr1 80386569 80386625 -162277728 + (TA)n Simple_repeat Simple_repeat 1 56 0 195 42 0 0 chr1 80387126 80387150 -162277203 + (A)n Simple_repeat Simple_repeat 1 24 0 211 231 19 0 chr1 80387922 80387974 -162276379 + CT-rich Low_complexity Low_complexity 3 55 0 4402 198 73 27 chr1 80388291 80389880 -162274473 + L1MDa LINE L1 1324 2992 -3548 945 166 0 0 chr1 80389996 80390117 -162274236 + AluSq/x SINE Alu 1 124 -188 207 0 0 0 chr1 80390117 80390140 -162274213 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 945 166 0 0 chr1 80390140 80390163 -162274190 + AluSq/x SINE Alu 123 145 -167 207 0 0 0 chr1 80390192 80390215 -162274138 + (CA)n Simple_repeat Simple_repeat 2 24 0 439 344 37 0 chr1 80391236 80391425 -162272928 + L3 LINE CR1 1377 1572 -5 346 291 86 0 chr1 80391907 80392024 -162272329 - L2 LINE L2 -7 3306 3180 208 383 108 12 chr1 80392333 80392500 -162271853 - MER5A DNA MER1_type 0 189 7 24 67 0 0 chr1 80394282 80394327 -162270026 + AT_rich Low_complexity Low_complexity 1 45 0 701 282 87 4 chr1 80394331 80394572 -162269781 - MIR SINE MIR 0 262 2 237 157 39 59 chr1 80395011 80395062 -162269291 - L2 LINE L2 -2 3311 3262 1472 320 96 11 chr1 80395154 80395991 -162268362 - L2 LINE L2 -19 3294 2368 1896 129 4 4 chr1 80396840 80397111 -162267242 + AluSp SINE Alu 27 297 -16 206 330 59 51 chr1 80397163 80397281 -162267072 + MIR SINE MIR 52 170 -92 282 275 93 63 chr1 80397471 80397624 -162266729 + MER5A DNA MER1_type 21 177 -1 22 0 0 0 chr1 80397701 80397723 -162266630 + AT_rich Low_complexity Low_complexity 1 22 0 405 0 0 0 chr1 80397983 80398028 -162266325 + (CA)n Simple_repeat Simple_repeat 2 46 0 205 220 0 40 chr1 80399047 80399097 -162265256 + GA-rich Low_complexity Low_complexity 6 53 0 559 250 92 16 chr1 80399261 80399445 -162264908 - MIR SINE MIR -64 198 1 219 362 35 17 chr1 80400100 80400216 -162264137 - MIR3 SINE MIR -13 195 78 25 0 0 0 chr1 80400253 80400278 -162264075 + AT_rich Low_complexity Low_complexity 1 25 0 736 291 121 18 chr1 80401402 80401800 -162262553 + MLT1J2 LTR MaLR 4 442 -8 4808 102 11 3 chr1 80401864 80402560 -162261793 - L1PA13 LINE L1 -8 6155 5454 1886 170 51 22 chr1 80402564 80402975 -162261378 - L1MB7 LINE L1 -12 6172 5750 233 365 173 21 chr1 80403667 80403996 -162260357 - L2 LINE L2 -3 3269 2891 325 238 22 76 chr1 80404573 80404758 -162259595 - L1MC5 LINE L1 -549 7412 7238 187 331 90 15 chr1 80404785 80404918 -162259435 - L2 LINE L2 -594 2720 2578 571 241 0 9 chr1 80405056 80405168 -162259185 + L2 LINE L2 3199 3309 -4 3237 233 31 26 chr1 80405599 80406607 -162257746 + L1M4 LINE L1 3187 4199 -1947 1439 65 5 0 chr1 80406925 80407124 -162257229 - L1PA8 LINE L1 -2164 3982 3783 * 9016 96 13 0 chr1 80407122 80408647 -162255706 + L1PA8 LINE L1 3985 5525 -629 2657 81 0 3 chr1 80408645 80409015 -162255338 + L1PA8 LINE L1 5728 6096 -76 * 1931 59 18 0 chr1 80409115 80409476 -162254877 + L1PA8 LINE L1 5160 5525 -629 3305 85 0 0 chr1 80409476 80409919 -162254434 + L1PA8 LINE L1 5728 6172 0 236 361 111 0 chr1 80410761 80410869 -162253484 + L2 LINE L2 3150 3269 -3 438 268 21 45 chr1 80411490 80411679 -162252674 + MIR SINE MIR 1 183 -62 277 262 12 24 chr1 80412304 80412388 -162251965 + MIR SINE MIR 23 105 -103 329 291 62 39 chr1 80413086 80413265 -162251088 + MIR3 SINE MIR 8 190 -18 318 324 39 0 chr1 80414396 80414498 -162249855 + L2 LINE L2 3166 3271 -1 737 278 61 20 chr1 80415291 80415536 -162248817 + MIR SINE MIR 7 261 -1 849 259 91 9 chr1 80415655 80415887 -162248466 - MIR SINE MIR -10 252 2 316 314 21 37 chr1 80416978 80417169 -162247184 + MLT1L LTR MaLR 420 607 -8 375 220 77 0 chr1 80417339 80417430 -162246923 + MER5A DNA MER1_type 9 106 -83 439 237 26 0 chr1 80417945 80418059 -162246294 + MIR SINE MIR 146 262 0 929 207 41 0 chr1 80418217 80418386 -162245967 - MER45A DNA AcHobo 0 178 3 206 298 18 0 chr1 80418615 80418672 -162245681 - L2 LINE L2 -91 3181 3124 835 226 48 22 chr1 80420601 80420831 -162243522 + MIR SINE MIR 6 241 -21 353 229 10 62 chr1 80421055 80421151 -162243202 - L2 LINE L2 0 3272 3182 195 319 94 51 chr1 80421410 80421645 -162242708 - L2 LINE L2 -646 2668 2424 2183 130 0 14 chr1 80421810 80422171 -162242182 - MER46B DNA MER2_type 0 236 6 372 200 24 12 chr1 80422719 80422804 -162241549 - MIR3 SINE MIR -15 193 108 2167 141 3 0 chr1 80422922 80423219 -162241134 - AluSx SINE Alu -14 298 1 625 294 64 38 chr1 80423844 80424079 -162240274 - MIR SINE MIR -20 242 2 377 287 148 10 chr1 80424482 80424684 -162239669 + MIR SINE MIR 8 237 -25 21 0 0 0 chr1 80425205 80425226 -162239127 + AT_rich Low_complexity Low_complexity 1 21 0 273 222 25 62 chr1 80425488 80425569 -162238784 + MIR SINE MIR 74 151 -111 279 163 0 0 chr1 80425750 80425793 -162238560 + 5S rRNA rRNA 1 43 -78 567 263 17 34 chr1 80425812 80425987 -162238366 + MIR SINE MIR 91 262 0 22 0 0 0 chr1 80426372 80426394 -162237959 + AT_rich Low_complexity Low_complexity 1 22 0 319 307 102 15 chr1 80427197 80427334 -162237019 + L2 LINE L2 3155 3303 -10 659 119 0 17 chr1 80427361 80427479 -162236874 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 333 331 0 41 chr1 80427480 80427601 -162236752 - MIR SINE MIR -142 120 5 27 0 0 0 chr1 80428369 80428396 -162235957 + AT_rich Low_complexity Low_complexity 1 27 0 625 302 109 20 chr1 80428430 80428980 -162235373 + L2 LINE L2 2680 3276 -37 181 340 20 0 chr1 80429883 80429933 -162234420 - MIR SINE MIR -108 100 50 397 241 0 0 chr1 80430471 80430558 -162233795 - MIR SINE MIR -11 251 165 634 185 5 113 chr1 80430791 80430943 -162233410 + MLT2C1 LTR ERVL 224 352 -45 369 0 0 0 chr1 80430943 80430984 -162233369 + (CA)n Simple_repeat Simple_repeat 2 42 0 634 185 5 113 chr1 80430984 80431026 -162233327 + MLT2C1 LTR ERVL 352 397 0 1825 153 0 10 chr1 80431915 80432209 -162232144 - AluSx SINE Alu -21 291 1 399 266 102 0 chr1 80432278 80432406 -162231947 + MER117 DNA MER1_type 20 160 -37 595 103 10 0 chr1 80432610 80432707 -162231646 + Tigger7 DNA MER2_type 2299 2396 -91 434 274 140 6 chr1 80432751 80432930 -162231423 - MIR SINE MIR -58 204 2 230 224 138 0 chr1 80433161 80433219 -162231134 + MIR3 SINE MIR 90 155 -53 374 271 49 16 chr1 80433706 80433828 -162230525 + MIR SINE MIR 21 146 -62 2628 133 72 156 chr1 80433841 80434606 -162229747 + MER44D DNA MER2_type 5 705 0 250 376 15 23 chr1 80434666 80434799 -162229554 + L2 LINE L2 3181 3312 -1 379 288 91 30 chr1 80435299 80435431 -162228922 + L2 LINE L2 3173 3312 -1 477 309 50 22 chr1 80435685 80435866 -162228487 - MIR3 SINE MIR -3 205 20 269 218 36 55 chr1 80436112 80436222 -162228131 + GA-rich Low_complexity Low_complexity 3 110 0 507 289 223 29 chr1 80436588 80437095 -162227258 - L2 LINE L2 0 3313 2718 27 0 0 0 chr1 80438870 80438897 -162225456 + AT_rich Low_complexity Low_complexity 1 27 0 212 122 24 0 chr1 80442822 80442863 -162221490 + CT-rich Low_complexity Low_complexity 2 43 0 237 65 0 0 chr1 80444488 80444519 -162219834 + (TG)n Simple_repeat Simple_repeat 2 32 0 416 302 18 47 chr1 80444534 80444703 -162219650 + MIR SINE MIR 12 175 -87 266 243 54 0 chr1 80444710 80444784 -162219569 - MIR SINE MIR 0 262 185 2013 131 10 16 chr1 80445649 80445963 -162218390 - AluSx SINE Alu 0 312 1 350 256 47 0 chr1 80447217 80447303 -162217050 + L1MC4 LINE L1 6614 6703 -1339 248 200 17 0 chr1 80447304 80447364 -162216989 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 661 300 68 64 chr1 80448128 80448631 -162215722 + L1M4 LINE L1 3663 4167 -1979 454 254 182 11 chr1 80448632 80448813 -162215540 + MLT1J2 LTR MaLR 1 212 -238 1652 173 8 91 chr1 80448934 80449332 -162215021 - MLT1A1 LTR MaLR 0 365 1 261 244 51 0 chr1 80449334 80449412 -162214941 + MLT1K LTR MaLR 507 588 0 26 0 0 0 chr1 80450069 80450095 -162214258 + AT_rich Low_complexity Low_complexity 1 26 0 2318 278 82 36 chr1 80451809 80452777 -162211576 - ERVL LTR ERVL -2411 3353 2342 384 246 144 8 chr1 80452829 80452947 -162211406 - ERVL LTR ERVL -3530 2234 2101 645 120 130 0 chr1 80453172 80453280 -162211073 - MLT1D LTR MaLR 0 505 384 593 191 49 116 chr1 80453292 80453517 -162210836 - MLT1D LTR MaLR -295 210 1 513 285 24 63 chr1 80453525 80453778 -162210575 - ERVL LTR ERVL -3941 1823 1581 998 310 80 45 chr1 80453845 80454043 -162210310 - ERVL LTR ERVL -4326 1438 1248 730 207 74 69 chr1 80454043 80454260 -162210093 + MER20 DNA MER1_type 2 219 0 998 310 80 45 chr1 80454260 80454665 -162209688 - ERVL LTR ERVL -4516 1248 814 549 330 5 0 chr1 80454703 80454903 -162209450 - ERVL LTR ERVL -5066 698 498 426 261 8 31 chr1 80455577 80455707 -162208646 - MLT2E LTR ERVL -472 156 30 418 334 35 64 chr1 80456098 80456409 -162207944 + L2 LINE L2 3004 3305 -8 501 274 37 24 chr1 80456484 80456648 -162207705 + MIR3 SINE MIR 40 205 -3 369 320 41 49 chr1 80456938 80457086 -162207267 + MIR SINE MIR 12 159 -103 2483 61 0 0 chr1 80457086 80457382 -162206971 - AluY SINE Alu -15 296 1 369 320 41 49 chr1 80457382 80457477 -162206876 + MIR SINE MIR 159 253 -9 247 172 121 35 chr1 80457484 80457518 -162206835 - MIR SINE MIR -123 139 109 225 65 0 0 chr1 80457518 80457549 -162206804 + (TG)n Simple_repeat Simple_repeat 2 32 0 247 172 121 35 chr1 80457549 80457572 -162206781 - MIR SINE MIR -153 109 77 12004 178 24 3 chr1 80458146 80461324 -162203029 - L1PA13 LINE L1 -11 6152 2926 2325 97 0 6 chr1 80461332 80461643 -162202710 - AluSg1 SINE Alu 0 309 1 7006 167 45 7 chr1 80461668 80464208 -162200145 - L1PB1 LINE L1 -4 6798 4153 1251 89 0 178 chr1 80464209 80464253 -162200100 - MLT2A1 LTR ERVL 0 444 394 453 52 39 0 chr1 80464253 80464330 -162200023 + (TA)n Simple_repeat Simple_repeat 2 81 0 1251 89 0 178 chr1 80464330 80464391 -162199962 - MLT2A1 LTR ERVL -50 394 324 261 0 0 0 chr1 80464391 80464420 -162199933 + (TA)n Simple_repeat Simple_repeat 2 30 0 1251 89 0 178 chr1 80464420 80464606 -162199747 - MLT2A1 LTR ERVL -120 324 204 2177 47 0 0 chr1 80464606 80464885 -162199468 - THE1B-int LTR MaLR -1300 280 2 2103 143 42 22 chr1 80464886 80465243 -162199110 - THE1B LTR MaLR 0 364 1 8928 184 50 15 chr1 80465247 80466290 -162198063 - L1PB1 LINE L1 -4877 1910 772 300 53 0 0 chr1 80466290 80466328 -162198025 + (CA)n Simple_repeat Simple_repeat 1 38 0 8928 184 50 15 chr1 80466328 80467129 -162197224 - L1PB1 LINE L1 -6015 772 1 221 288 126 0 chr1 80467347 80467458 -162196895 - L2 LINE L2 0 3272 3148 954 290 36 10 chr1 80468300 80468603 -162195750 - L2 LINE L2 -2024 1290 980 1997 167 37 15 chr1 80468603 80469057 -162195296 - LTR56 LTR ERV1 0 437 1 951 268 57 55 chr1 80469058 80469461 -162194892 - L2 LINE L2 -2332 982 579 334 347 48 14 chr1 80469690 80469837 -162194516 + Charlie8 DNA MER1_type 125 276 -2141 1561 181 49 171 chr1 80470027 80470817 -162193536 - LTR8A LTR ERV1 0 727 34 810 206 0 0 chr1 80470836 80470972 -162193381 - FRAM SINE Alu -41 135 1 2175 112 20 0 chr1 80471008 80471304 -162193049 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr1 80471309 80471332 -162193021 + (CAA)n Simple_repeat Simple_repeat 2 24 0 420 327 55 18 chr1 80471587 80471752 -162192601 - MIR3 SINE MIR -3 205 35 692 260 12 6 chr1 80472319 80472488 -162191865 + MER45A DNA AcHobo 9 178 0 522 290 100 5 chr1 80472745 80472945 -162191408 - MIR SINE MIR -13 249 31 363 318 54 13 chr1 80473363 80473602 -162190751 - L1MEd LINE L1 -2147 3982 3734 * 526 199 92 51 chr1 80473592 80473908 -162190445 - L1MEd LINE L1 -2948 3181 2853 22 35 0 0 chr1 80473913 80473942 -162190411 + AT_rich Low_complexity Low_complexity 1 29 0 312 249 120 17 chr1 80473975 80474216 -162190137 - L1MEd LINE L1 -5118 1001 736 312 316 0 0 chr1 80475717 80475815 -162188538 - L1ME3A LINE L1 -264 5906 5809 705 283 123 31 chr1 80475833 80475942 -162188411 - L1ME3A LINE L1 -407 5763 5665 189 0 0 0 chr1 80475942 80475963 -162188390 + (TA)n Simple_repeat Simple_repeat 1 21 0 705 283 123 31 chr1 80475963 80476873 -162187480 - L1ME3A LINE L1 -505 5665 4592 1566 184 42 72 chr1 80476873 80477275 -162187078 - MLT1B LTR MaLR 0 390 1 705 283 123 31 chr1 80477275 80477475 -162186878 - L1ME3A LINE L1 -1578 4592 4412 25 31 0 0 chr1 80477504 80477536 -162186817 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 80478000 80478023 -162186330 + AT_rich Low_complexity Low_complexity 1 23 0 1253 222 59 35 chr1 80478206 80478661 -162185692 - Charlie2 DNA MER1_type -538 2324 1859 818 256 91 21 chr1 80478689 80478974 -162185379 - Charlie2 DNA MER1_type -2540 322 18 199 279 0 0 chr1 80480690 80480733 -162183620 - L2 LINE L2 -38 3234 3192 949 200 68 5 chr1 80480773 80480978 -162183375 - MER20 DNA MER1_type 0 219 2 427 258 140 51 chr1 80481022 80481295 -162183058 + MLT1L LTR MaLR 229 612 -3 452 256 70 20 chr1 80481849 80482040 -162182313 + MLT1J1 LTR MaLR 1 198 -211 1628 160 36 28 chr1 80482117 80482479 -162181874 - MLT1A1 LTR MaLR 0 365 1 371 326 99 27 chr1 80484120 80484341 -162180012 + L3 LINE CR1 1160 1396 -181 745 254 127 7 chr1 80484341 80484632 -162179721 + MLT1J2 LTR MaLR 1 326 -124 188 231 0 0 chr1 80484724 80484763 -162179590 + L3 LINE CR1 1392 1430 -147 720 197 0 0 chr1 80484772 80484904 -162179449 - Tigger5 DNA MER2_type -14 2309 2178 306 205 17 68 chr1 80485271 80485397 -162178956 + HAL1b LINE L1 1188 1307 -41 187 318 0 0 chr1 80486881 80486925 -162177428 - MIR SINE MIR -78 130 87 291 324 103 0 chr1 80487001 80487137 -162177216 - MIR SINE MIR -56 206 57 23 0 0 0 chr1 80487541 80487564 -162176789 + AT_rich Low_complexity Low_complexity 1 23 0 200 273 0 0 chr1 80487647 80487691 -162176662 + (CA)n Simple_repeat Simple_repeat 1 44 0 29 0 0 0 chr1 80488302 80488331 -162176022 + AT_rich Low_complexity Low_complexity 1 29 0 228 326 83 22 chr1 80488840 80489248 -162175105 - L1ME LINE L1 -197 5924 5492 25947 35 16 1 chr1 80489660 80495689 -162168664 - L1PA3 LINE L1 0 6155 1 304 261 46 31 chr1 80495858 80495988 -162168365 - MLT1L LTR MaLR -2 613 482 395 265 24 65 chr1 80496144 80496314 -162168039 - MLT1L LTR MaLR -342 273 111 372 301 55 68 chr1 80497114 80497333 -162167020 - MIR SINE MIR -46 216 1 4316 144 14 0 chr1 80497457 80498157 -162166196 - L1PA15 LINE L1 -4 6161 5452 230 293 85 60 chr1 80498312 80498581 -162165772 - L2 LINE L2 -212 3060 2737 1983 118 34 20 chr1 80499063 80499360 -162164993 - AluSq SINE Alu -12 301 1 23 0 0 0 chr1 80499444 80499467 -162164886 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr1 80500010 80500036 -162164317 + AT_rich Low_complexity Low_complexity 1 26 0 283 255 141 11 chr1 80500238 80500445 -162163908 + LTR33A LTR ERVL 1 229 -294 358 262 76 69 chr1 80500484 80500769 -162163584 + LTR50 LTR ERVL 304 507 -16 417 338 37 0 chr1 80501698 80501834 -162162519 - MIR SINE MIR -121 141 1 23 0 0 0 chr1 80502245 80502268 -162162085 + AT_rich Low_complexity Low_complexity 1 23 0 2194 127 3 29 chr1 80502558 80502904 -162161449 + MER1B DNA MER1_type 1 337 0 617 272 51 47 chr1 80502938 80503214 -162161139 + L2 LINE L2 2989 3265 -48 2198 166 2 0 chr1 80503588 80503986 -162160367 + L1PA14 LINE L1 3540 3938 -2208 1242 32 7 0 chr1 80503992 80504146 -162160207 + AluY SINE Alu 157 311 0 1022 177 6 0 chr1 80504148 80504329 -162160024 + L1PA14 LINE L1 3933 4114 -2032 5970 102 17 2 chr1 80504329 80505712 -162158641 + L1PA14 LINE L1 4762 6158 -3 1397 153 65 14 chr1 80506402 80506549 -162157804 - L1MA9 LINE L1 0 6312 6174 303 71 0 0 chr1 80506549 80506591 -162157762 + (TG)n Simple_repeat Simple_repeat 1 42 0 1397 153 65 14 chr1 80506591 80506737 -162157616 - L1MA9 LINE L1 -138 6174 6004 271 277 144 98 chr1 80507759 80508307 -162156046 + L3 LINE CR1 949 1521 -56 231 329 58 83 chr1 80508321 80508440 -162155913 + MIR SINE MIR 8 120 -142 2152 128 0 3 chr1 80508440 80508738 -162155615 - AluSx SINE Alu -15 297 1 231 329 58 83 chr1 80508738 80508858 -162155495 + MIR SINE MIR 120 241 -21 344 382 15 0 chr1 80509179 80509310 -162155043 + MIR3 SINE MIR 47 179 -29 24 0 0 0 chr1 80509337 80509361 -162154992 + AT_rich Low_complexity Low_complexity 1 24 0 2383 45 0 0 chr1 80509361 80509651 -162154702 - L1PA4 LINE L1 -3 6152 5863 180 274 32 48 chr1 80511124 80511186 -162153167 - MIR SINE MIR -115 147 87 382 264 98 60 chr1 80511213 80511448 -162152905 - MLT1L LTR MaLR -2 613 370 190 299 15 30 chr1 80512534 80512601 -162151752 + L2 LINE L2 3205 3270 -2 496 212 0 40 chr1 80512825 80512924 -162151429 - L2 LINE L2 0 3313 3219 889 175 0 0 chr1 80512926 80513103 -162151250 + L1PA13 LINE L1 5175 5351 -795 2355 93 3 17 chr1 80513109 80513138 -162151215 + L1PA13 LINE L1 5443 5471 -697 1795 145 184 11 chr1 80513138 80513503 -162150850 + MSTA LTR MaLR 1 428 0 2355 93 3 17 chr1 80513503 80513828 -162150525 + L1PA13 LINE L1 5471 5792 -376 * 4719 142 5 72 chr1 80513827 80514791 -162149562 - THE1C-int LTR MaLR -678 902 3 1750 117 84 63 chr1 80514793 80515160 -162149193 - THE1C LTR MaLR 0 375 1 2651 84 3 13 chr1 80515160 80515539 -162148814 + L1PA13 LINE L1 5788 6162 -1 3352 264 72 22 chr1 80515712 80517297 -162147056 + L1MCc LINE L1 865 2369 -4572 2246 129 0 0 chr1 80517297 80517600 -162146753 - AluSx SINE Alu -9 303 1 3352 264 72 22 chr1 80517600 80519004 -162145349 + L1MCc LINE L1 2369 4174 -2767 391 244 16 24 chr1 80519076 80519199 -162145154 + L1ME1 LINE L1 6026 6147 -19 436 229 9 0 chr1 80519358 80519463 -162144890 + L1MD3 LINE L1 7694 7799 -196 3122 141 10 58 chr1 80519466 80520084 -162144269 + L1PB4 LINE L1 5569 6156 0 180 256 0 0 chr1 80520171 80520214 -162144139 - L2 LINE L2 -1612 1702 1660 2157 69 18 0 chr1 80520483 80520757 -162143596 + AluY SINE Alu 1 279 -32 426 20 0 0 chr1 80520757 80520808 -162143545 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 213 39 0 0 chr1 80522206 80522232 -162142121 + (TG)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr1 80522231 80522251 -162142102 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 247 196 0 0 chr1 80522621 80522667 -162141686 - L2 LINE L2 0 3272 3227 185 261 22 0 chr1 80522805 80522851 -162141502 - MIR SINE MIR -14 248 202 1717 241 55 33 chr1 80522856 80523577 -162140776 - HsTC2a DNA Tc2 -5 739 3 438 257 207 7 chr1 80523580 80523720 -162140633 - MIR SINE MIR -67 195 28 207 328 15 0 chr1 80523729 80523796 -162140557 + L2 LINE L2 2992 3059 -254 303 253 165 11 chr1 80523814 80523905 -162140448 + L2 LINE L2 3182 3286 -27 834 154 0 0 chr1 80524470 80524593 -162139760 + FLAM_C SINE Alu 1 123 -20 260 322 192 0 chr1 80524980 80525157 -162139196 - MIR SINE MIR -32 230 20 501 293 30 8 chr1 80526121 80526254 -162138099 - MIR SINE MIR -76 186 51 1614 183 101 57 chr1 80526268 80526705 -162137648 + MLT1C LTR MaLR 6 461 -6 669 227 143 74 chr1 80526702 80527214 -162137139 + MER34C LTR ERV1 35 581 -4 * 310 292 10 31 chr1 80527635 80527827 -162136526 - L1MEd LINE L1 -4978 1141 954 864 118 24 8 chr1 80527923 80528050 -162136303 - AluJb SINE Alu -183 129 1 284 236 76 92 chr1 80528066 80528129 -162136224 - L1MEd LINE L1 -5241 878 816 5282 133 22 19 chr1 80528129 80529029 -162135324 - MER4D LTR ERV1 0 903 1 284 236 76 92 chr1 80529029 80529215 -162135138 - L1MEd LINE L1 -5303 816 633 234 320 0 13 chr1 80529882 80529957 -162134396 + L2 LINE L2 3239 3312 -1 231 283 0 0 chr1 80530498 80530551 -162133802 + (TG)n Simple_repeat Simple_repeat 1 53 0 833 180 6 0 chr1 80531325 80531492 -162132861 + GA-rich Low_complexity Low_complexity 5 172 0 330 267 0 0 chr1 80531818 80531904 -162132449 - MIR SINE MIR -30 232 147 582 157 0 0 chr1 80531956 80532058 -162132295 + CT-rich Low_complexity Low_complexity 3 104 0 472 281 12 0 chr1 80532070 80532241 -162132112 - L1MC5 LINE L1 -100 7861 7689 578 266 78 41 chr1 80532252 80532496 -162131857 + L1ME LINE L1 40 292 -6104 396 211 0 0 chr1 80532502 80532592 -162131761 + L1ME LINE L1 4687 4776 -1439 655 153 0 0 chr1 80532592 80532690 -162131663 + AluJb SINE Alu 199 296 -16 1703 218 51 43 chr1 80532692 80532742 -162131611 + L1ME LINE L1 4766 4814 -1401 2832 118 14 0 chr1 80532742 80533175 -162131178 + L1PA13 LINE L1 5721 6159 -4 1703 218 51 43 chr1 80533175 80533273 -162131080 + L1ME LINE L1 4814 4910 -1305 441 0 0 0 chr1 80533273 80533322 -162131031 + (CA)n Simple_repeat Simple_repeat 2 50 0 1703 218 51 43 chr1 80533322 80533705 -162130648 + L1ME LINE L1 4910 5302 -913 4175 118 22 125 chr1 80533730 80534685 -162129668 - Tigger4(Zombi) DNA MER2_type -1 2730 1874 312 200 0 0 chr1 80534697 80534767 -162129586 + (TA)n Simple_repeat Simple_repeat 1 70 0 345 232 27 27 chr1 80534767 80534879 -162129474 - L1M4 LINE L1 -1300 4846 4735 244 161 16 16 chr1 80534876 80534938 -162129415 - L1PA12 LINE L1 0 6168 6107 * 333 237 0 43 chr1 80534939 80535032 -162129321 - L1MC4 LINE L1 -1339 6703 6615 355 281 6 6 chr1 80535096 80535274 -162129079 + (TA)n Simple_repeat Simple_repeat 1 178 0 312 302 33 55 chr1 80535294 80535476 -162128877 + L1MC4 LINE L1 6528 6705 -1337 440 269 0 11 chr1 80535520 80535702 -162128651 + (TA)n Simple_repeat Simple_repeat 1 180 0 1822 163 47 0 chr1 80535731 80536051 -162128302 + MER7A DNA MER2_type 1 333 -13 252 154 0 0 chr1 80536063 80536115 -162128238 + (TA)n Simple_repeat Simple_repeat 2 53 0 236 225 14 14 chr1 80536121 80536192 -162128161 + L1ME LINE L1 5410 5480 -755 441 187 27 9 chr1 80536202 80536330 -162128023 + L1ME LINE L1 5454 5570 -663 186 367 0 0 chr1 80537133 80537193 -162127160 + MIR SINE MIR 90 149 -113 1093 182 48 19 chr1 80538457 80538666 -162125687 - MER20 DNA MER1_type -4 215 1 22 35 0 0 chr1 80538852 80538881 -162125472 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 80538887 80538911 -162125442 + AT_rich Low_complexity Low_complexity 1 24 0 283 287 23 0 chr1 80539884 80539971 -162124382 - MIR SINE MIR -84 124 36 233 307 143 50 chr1 80540409 80540549 -162123804 - MER5A DNA MER1_type 0 189 37 26 0 0 0 chr1 80540627 80540653 -162123700 + AT_rich Low_complexity Low_complexity 1 26 0 222 91 0 0 chr1 80541249 80541282 -162123071 + (TG)n Simple_repeat Simple_repeat 1 33 0 181 286 175 0 chr1 80541558 80541621 -162122732 - MIR SINE MIR -156 106 33 2412 94 0 25 chr1 80541665 80541983 -162122370 + AluSq SINE Alu 1 310 -3 280 277 169 0 chr1 80542421 80542504 -162121849 + MIR SINE MIR 17 113 -95 603 340 46 8 chr1 80543203 80543441 -162120912 - MIR SINE MIR -10 252 6 10799 157 42 6 chr1 80543826 80545265 -162119088 + L1M2 LINE L1 3 1390 -5472 228 35 0 0 chr1 80545265 80545294 -162119059 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 10799 157 42 6 chr1 80545294 80548664 -162115689 + L1M2 LINE L1 1390 5161 -1701 404 280 195 21 chr1 80548772 80549008 -162115345 - LTR67 LTR ERVL -13 544 268 2061 141 37 11 chr1 80549128 80549290 -162115063 + L1M2 LINE L1 5731 5887 -1120 2617 38 0 31 chr1 80549290 80549610 -162114743 + AluY SINE Alu 1 310 -1 2061 141 37 11 chr1 80549610 80549980 -162114373 + L1M2 LINE L1 5887 6279 -728 695 140 0 0 chr1 80549980 80550080 -162114273 - LTR12 LTR ERV1 0 714 615 393 215 11 0 chr1 80550082 80550175 -162114178 - LTR30 LTR ERV1 -79 643 550 16952 120 29 14 chr1 80550246 80550841 -162113512 + HERV9 LTR ERV1 85 670 -7729 8226 54 9 0 chr1 80550841 80551798 -162112555 + LTR5 LTR ERVK 1 966 -3 16952 120 29 14 chr1 80551798 80554870 -162109483 + HERV9 LTR ERV1 670 3977 -4422 * 30444 103 6 7 chr1 80554869 80559077 -162105276 + HERV9 LTR ERV1 4196 8399 0 1466 114 8 53 chr1 80559077 80559322 -162105031 + LTR12 LTR ERV1 1 234 -480 273 281 66 0 chr1 80559410 80559531 -162104822 + LTR30 LTR ERV1 524 652 -70 677 116 0 0 chr1 80559531 80559626 -162104727 + LTR12 LTR ERV1 484 578 -136 4403 126 29 27 chr1 80559628 80560358 -162103995 + L1MA7 LINE L1 5559 6289 -2 206 286 0 0 chr1 80560372 80560421 -162103932 + (CA)n Simple_repeat Simple_repeat 2 50 0 1321 297 124 19 chr1 80560424 80561053 -162103300 - L2 LINE L2 -439 2875 2181 226 245 19 19 chr1 80561156 80561209 -162103144 + MIR SINE MIR 72 124 -84 279 0 0 0 chr1 80561626 80561657 -162102696 + (TG)n Simple_repeat Simple_repeat 2 32 0 244 326 99 7 chr1 80563418 80563559 -162100794 + MIR SINE MIR 54 207 -55 283 287 10 40 chr1 80563631 80563732 -162100621 + L2 LINE L2 3173 3270 -2 22839 92 5 5 chr1 80564358 80568149 -162096204 - L1PA7 LINE L1 -6 6148 2364 2086 123 0 7 chr1 80568149 80568449 -162095904 - AluSc SINE Alu -11 298 1 22839 92 5 5 chr1 80568449 80568526 -162095827 - L1PA7 LINE L1 -3790 2364 2288 258 317 24 19 chr1 80568618 80568736 -162095617 - MIR SINE MIR -58 150 37 199 397 8 8 chr1 80568908 80569034 -162095319 - MIR SINE MIR -110 152 27 275 313 123 12 chr1 80569060 80569223 -162095130 - L3 LINE CR1 -12 1565 1385 257 207 52 0 chr1 80569956 80570014 -162094339 + MIR SINE MIR 131 191 -71 2220 120 3 7 chr1 80570315 80570623 -162093730 - AluSx SINE Alu -5 307 1 776 237 55 40 chr1 80571674 80571948 -162092405 + MER102b DNA MER1_type 15 292 -49 286 255 19 108 chr1 80571963 80572120 -162092233 + L2 LINE L2 3171 3313 0 472 272 98 27 chr1 80572144 80572328 -162092025 + MIR SINE MIR 62 258 -4 322 298 32 16 chr1 80572673 80572797 -162091556 + MIR SINE MIR 123 248 -14 228 233 0 0 chr1 80572937 80572997 -162091356 + MIR SINE MIR 71 130 -78 717 307 111 33 chr1 80573034 80573431 -162090922 + LTR16A LTR ERVL 16 443 -7 261 333 99 7 chr1 80574490 80574631 -162089722 + MIR SINE MIR 89 242 -20 1527 189 44 0 chr1 80575416 80575536 -162088817 + AluJb SINE Alu 1 114 -198 261 0 0 0 chr1 80575536 80575565 -162088788 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1527 189 44 0 chr1 80575565 80575714 -162088639 + AluJb SINE Alu 114 282 -30 534 70 0 0 chr1 80575715 80575786 -162088567 + (CAAGA)n Simple_repeat Simple_repeat 2 72 0 270 81 0 0 chr1 80576029 80576066 -162088287 + (TTCCC)n Simple_repeat Simple_repeat 4 40 0 326 61 20 0 chr1 80576434 80576483 -162087870 + (TCC)n Simple_repeat Simple_repeat 2 51 0 284 283 106 0 chr1 80576493 80576606 -162087747 + MIR3 SINE MIR 66 190 -18 372 239 125 54 chr1 80576626 80576810 -162087543 + MIR SINE MIR 8 204 -58 216 325 36 0 chr1 80576790 80576873 -162087480 - MIR SINE MIR -13 249 164 * 206 356 0 29 chr1 80576966 80577070 -162087283 - L3 LINE CR1 -861 716 616 302 358 53 13 chr1 80577095 80577246 -162087107 + MER5B DNA MER1_type 21 177 -1 188 259 62 49 chr1 80577372 80577453 -162086900 - L3 LINE CR1 -1121 456 375 2094 133 0 0 chr1 80577665 80577958 -162086395 - AluSg SINE Alu -17 293 1 251 264 0 0 chr1 80578077 80578130 -162086223 - L2 LINE L2 -2 3311 3259 499 313 19 9 chr1 80578669 80578864 -162085489 - MIR SINE MIR -57 205 9 2119 115 10 0 chr1 80578910 80579198 -162085155 - AluSx SINE Alu -19 293 3 321 315 54 0 chr1 80579206 80579336 -162085017 - MER117 DNA MER1_type -59 138 2 367 385 32 5 chr1 80579471 80579689 -162084664 + L2 LINE L2 2751 2974 -340 326 294 194 6 chr1 80580213 80580383 -162083970 + MIR SINE MIR 33 234 -28 503 286 118 17 chr1 80580489 80580667 -162083686 - MIR SINE MIR -28 234 39 216 292 283 0 chr1 80580762 80580882 -162083471 + MIR SINE MIR 59 212 -50 239 253 11 35 chr1 80581649 80581736 -162082617 - MIR SINE MIR -107 101 17 493 267 51 40 chr1 80582590 80582766 -162081587 - MIR SINE MIR -57 205 28 240 209 47 70 chr1 80583357 80583443 -162080910 + L2 LINE L2 2926 3009 -263 200 354 31 15 chr1 80583943 80584073 -162080280 + MIR3 SINE MIR 66 197 -11 264 167 22 67 chr1 80584106 80584196 -162080157 - L1ME4a LINE L1 0 6121 6036 26 0 0 0 chr1 80584272 80584298 -162080055 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr1 80584339 80584374 -162079979 + AT_rich Low_complexity Low_complexity 1 35 0 424 290 101 48 chr1 80584386 80584824 -162079529 - L1ME LINE L1 -347 5774 5314 1427 226 6 22 chr1 80584841 80585184 -162079169 - AluJo SINE Alu 0 339 2 2225 78 0 4 chr1 80585739 80586084 -162078269 - AluY SINE Alu 0 344 1 2464 102 42 3 chr1 80586167 80586520 -162077833 + L1PA16 LINE L1 5791 6157 -9 2309 222 67 28 chr1 80586807 80587406 -162076947 + LTR27 LTR ERV1 15 636 0 1020 203 4 37 chr1 80588093 80588335 -162076018 - MER96B DNA MER1_type? -183 234 1 1383 243 84 34 chr1 80588353 80588793 -162075560 + MLT1C LTR MaLR 6 467 0 192 40 0 0 chr1 80588950 80588975 -162075378 + (TG)n Simple_repeat Simple_repeat 2 26 0 241 290 0 0 chr1 80588979 80589041 -162075312 - L2 LINE L2 -1 3312 3251 437 241 0 0 chr1 80589467 80589546 -162074807 - FRAM/FAM SINE Alu -94 82 4 1370 272 29 93 chr1 80589573 80590573 -162073780 - L1MEc LINE L1 -4398 1998 1063 3432 185 85 91 chr1 80590639 80591554 -162072799 - MER21A LTR ERV1 -7 924 15 2813 235 91 18 chr1 80591555 80592406 -162071947 - L1MEc LINE L1 -5449 947 35 648 237 147 0 chr1 80592532 80592688 -162071665 + MER5A DNA MER1_type 4 182 -7 185 305 0 84 chr1 80592653 80592748 -162071605 + MIR3 SINE MIR 119 205 -3 * 2047 152 32 80 chr1 80593295 80593670 -162070683 - LTR18A LTR ERVL 0 357 1 514 206 0 0 chr1 80593823 80593915 -162070438 - HERVL18 LTR ERVL -10 6037 5946 669 117 11 0 chr1 80593974 80594068 -162070285 - HERVL18 LTR ERVL -1559 4488 4394 2400 168 0 13 chr1 80594070 80594752 -162069601 - HERVL18 LTR ERVL -2468 3579 2868 1014 121 21 0 chr1 80594781 80594922 -162069431 - LTR18A LTR ERVL -112 245 102 899 143 0 7 chr1 80594928 80595075 -162069278 - HERVL18 LTR ERVL -3184 2863 2718 499 103 0 5 chr1 80595072 80595195 -162069158 - HERVL18 LTR ERVL -3595 2452 2273 * 1499 348 95 25 chr1 80595196 80596522 -162067831 + L2 LINE L2 1533 2951 -363 2426 69 7 0 chr1 80596651 80596954 -162067399 - AluY SINE Alu -6 305 1 297 356 53 23 chr1 80596982 80597114 -162067239 + L2 LINE L2 3137 3272 0 196 259 79 122 chr1 80597124 80597313 -162067040 + L2 LINE L2 2899 3079 -193 219 207 35 17 chr1 80597428 80597486 -162066867 + L2 LINE L2 3214 3272 0 865 364 100 17 chr1 80597801 80598433 -162065920 + L3 LINE CR1 123 806 -771 246 330 130 15 chr1 80598487 80598555 -162065798 - MIR SINE MIR -2 260 201 2287 97 3 0 chr1 80598555 80598844 -162065509 - AluSp SINE Alu -23 290 1 246 330 130 15 chr1 80598844 80598975 -162065378 - MIR SINE MIR -61 201 38 779 314 105 21 chr1 80599018 80599390 -162064963 + L3 LINE CR1 796 1198 -379 757 254 11 21 chr1 80599423 80599612 -162064741 - MIR SINE MIR -4 258 72 215 250 38 50 chr1 80599801 80599881 -162064472 + L3 LINE CR1 1483 1561 -16 216 264 38 0 chr1 80600089 80600142 -162064211 - L2 LINE L2 0 3313 3259 337 310 78 0 chr1 80600162 80600304 -162064049 - MIR SINE MIR -107 155 3 441 229 31 109 chr1 80600977 80601022 -162063331 + MER5B DNA MER1_type 1 48 -130 1691 164 4 4 chr1 80601022 80601285 -162063068 + AluSx SINE Alu 1 263 -49 441 229 31 109 chr1 80601285 80601431 -162062922 + MER5B DNA MER1_type 48 177 -1 327 65 0 0 chr1 80601739 80601785 -162062568 + (CA)n Simple_repeat Simple_repeat 2 47 0 249 253 138 0 chr1 80601973 80602060 -162062293 + MIR3 SINE MIR 110 208 0 510 307 27 13 chr1 80604864 80605014 -162059339 - MIR SINE MIR -89 173 22 632 80 0 35 chr1 80605856 80605969 -162058384 + (TA)n Simple_repeat Simple_repeat 2 110 0 2334 112 3 10 chr1 80606811 80607123 -162057230 - AluSx SINE Alu -2 310 1 191 225 0 0 chr1 80608432 80608472 -162055881 - L3 LINE CR1 -5 1572 1533 459 344 95 7 chr1 80610751 80611036 -162053317 - L3b LINE CR1 -163 1420 1111 970 172 61 0 chr1 80613200 80613363 -162050990 - FRAM SINE Alu -7 169 1 6221 56 15 0 chr1 80615242 80615979 -162048374 - LTR5 LTR ERVK -221 748 1 3784 114 44 3 chr1 80615979 80616574 -162047779 - HERV9 LTR ERV1 -7696 703 85 363 215 11 0 chr1 80616645 80616738 -162047615 + LTR30 LTR ERV1 550 643 -79 651 140 0 0 chr1 80616740 80616840 -162047513 + LTR12 LTR ERV1 615 714 0 1675 136 33 4 chr1 80616840 80617210 -162047143 - L1M2 LINE L1 -728 5563 5183 2543 55 7 0 chr1 80617210 80617518 -162046835 - AluY SINE Alu -1 310 1 297 356 53 23 chr1 80617546 80617678 -162046675 + L2 LINE L2 3137 3272 0 196 259 79 122 chr1 80617688 80617877 -162046476 + L2 LINE L2 2899 3079 -193 219 207 35 17 chr1 80617992 80618050 -162046303 + L2 LINE L2 3214 3272 0 268 232 48 32 chr1 80618380 80618505 -162045848 - L1MEc LINE L1 -5207 1189 1063 3095 185 85 90 chr1 80618571 80619485 -162044868 - MER21A LTR ERV1 -7 924 15 2494 237 96 12 chr1 80619515 80620337 -162044016 - L1MEc LINE L1 -5471 925 35 654 237 147 0 chr1 80620463 80620619 -162043734 + MER5A DNA MER1_type 4 182 -7 189 305 0 84 chr1 80620584 80620679 -162043674 + MIR3 SINE MIR 119 205 -3 * 181 270 40 27 chr1 80620817 80620891 -162043462 + L2 LINE L2 3237 3311 -2 1300 120 40 106 chr1 80621226 80621500 -162042853 - LTR18A LTR ERVL 0 357 102 844 138 0 7 chr1 80621506 80621651 -162042702 - HERVL18 LTR ERVL -3184 2863 2720 467 103 0 5 chr1 80621650 80621773 -162042580 - HERVL18 LTR ERVL -3595 2452 2273 * 1296 337 97 26 chr1 80621774 80622869 -162041484 + L2 LINE L2 1533 2704 -610 248 361 155 0 chr1 80623730 80623827 -162040526 - MIR SINE MIR -65 143 32 22 35 0 0 chr1 80623992 80624021 -162040332 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr1 80624257 80624300 -162040053 + AT_rich Low_complexity Low_complexity 1 43 0 311 186 8 136 chr1 80624946 80624967 -162039386 + MER5A DNA MER1_type 2 7 -182 234 232 194 71 chr1 80624967 80625122 -162039231 - MER5B DNA MER1_type -1 177 4 187 265 0 0 chr1 80625184 80625233 -162039120 - L2 LINE L2 -4 3309 3261 221 324 201 11 chr1 80626266 80626445 -162037908 - L3b LINE CR1 -131 1452 1240 2231 117 3 0 chr1 80626446 80626746 -162037607 - AluSq SINE Alu -12 301 1 538 321 6 6 chr1 80626908 80627076 -162037277 + MIR3 SINE MIR 30 197 -11 356 274 0 0 chr1 80627275 80627359 -162036994 - MIR3 SINE MIR -7 201 118 27 0 0 0 chr1 80631339 80631366 -162032987 + AT_rich Low_complexity Low_complexity 1 27 0 229 246 56 120 chr1 80632343 80632485 -162031868 - L2 LINE L2 -1 3312 3180 321 286 11 11 chr1 80635119 80635210 -162029143 + MIR SINE MIR 53 143 -65 25 51 0 0 chr1 80636325 80636364 -162027989 + AT_rich Low_complexity Low_complexity 1 39 0 442 84 56 0 chr1 80636380 80636451 -162027902 + MER53 DNA DNA 2 76 -113 223 357 48 0 chr1 80639427 80639511 -162024842 + MIR SINE MIR 36 123 -85 399 366 38 45 chr1 80639520 80639785 -162024568 - L2 LINE L2 -10 3262 3000 357 301 77 19 chr1 80639898 80640092 -162024261 + MIR SINE MIR 14 211 -51 1681 151 12 52 chr1 80642050 80642375 -162021978 - AluSx SINE Alu 0 312 1 1623 147 9 74 chr1 80642385 80642711 -162021642 - AluSq SINE Alu -8 305 1 28 29 0 0 chr1 80644513 80644548 -162019805 + AT_rich Low_complexity Low_complexity 1 35 0 219 103 0 0 chr1 80645273 80645312 -162019041 + (A)n Simple_repeat Simple_repeat 1 39 0 2736 7 0 3 chr1 80646099 80646400 -162017953 - AluYa5 SINE Alu -11 300 1 663 263 88 5 chr1 80646865 80647056 -162017297 + MIR SINE MIR 22 225 -37 461 148 12 12 chr1 80647453 80647534 -162016819 - MER115 DNA AcHobo -121 572 492 504 278 98 26 chr1 80647716 80647950 -162016403 - MER115 DNA AcHobo -442 251 1 553 67 0 67 chr1 80650223 80650313 -162014040 - AluJ/FLAM SINE Alu -228 84 1 195 42 0 0 chr1 80651645 80651669 -162012684 + (TG)n Simple_repeat Simple_repeat 2 25 0 438 321 170 9 chr1 80655278 80655490 -162008863 + MIR SINE MIR 5 250 -12 876 166 13 0 chr1 80655616 80655767 -162008586 - MER45C DNA AcHobo -1 952 800 727 158 7 7 chr1 80655773 80655912 -162008441 - L1MC3 LINE L1 -9 7776 7638 2187 275 57 42 chr1 80655940 80656697 -162007656 - MER45C DNA AcHobo -180 773 6 21 36 0 0 chr1 80656977 80657005 -162007348 + AT_rich Low_complexity Low_complexity 1 28 0 334 288 23 30 chr1 80657407 80657539 -162006814 + MIR SINE MIR 40 170 -92 386 310 69 13 chr1 80657615 80657847 -162006506 - L1ME4a LINE L1 -5 6116 5872 203 291 18 0 chr1 80658270 80658325 -162006028 - MIR SINE MIR -70 138 83 1090 234 23 26 chr1 80658581 80658889 -162005464 + L1ME3A LINE L1 5832 6138 -32 493 298 87 0 chr1 80659147 80659308 -162005045 + MIR SINE MIR 57 231 -31 383 180 22 56 chr1 80659647 80659736 -162004617 - L2 LINE L2 -1 3271 3186 244 272 6 98 chr1 80660587 80660760 -162003593 - MIR SINE MIR -22 240 84 211 224 13 66 chr1 80660770 80660846 -162003507 + GA-rich Low_complexity Low_complexity 1 72 0 874 236 43 43 chr1 80661286 80661544 -162002809 + MIR SINE MIR 5 262 0 196 354 15 0 chr1 80661577 80661642 -162002711 - L2 LINE L2 -16 3256 3191 452 308 113 23 chr1 80661916 80662137 -162002216 - L2 LINE L2 -453 2861 2621 563 286 141 15 chr1 80662142 80662341 -162002012 + MIR SINE MIR 11 234 -28 284 106 85 0 chr1 80662371 80662418 -162001935 + MLT1A1 LTR MaLR 1 51 -314 6750 59 18 0 chr1 80662442 80663519 -162000834 - L1P2 LINE L1 -627 5527 4436 769 218 6 6 chr1 80663523 80663688 -162000665 + MLT1A1 LTR MaLR 199 363 -2 320 311 29 0 chr1 80663705 80663808 -162000545 - L2 LINE L2 -692 2622 2517 468 358 57 66 chr1 80664170 80664505 -161999848 + L2 LINE L2 2932 3263 -9 411 268 38 108 chr1 80665365 80665578 -161998775 - MIR SINE MIR -61 201 4 231 241 0 3 chr1 80666144 80666200 -161998153 - MIR SINE MIR -67 141 95 1160 179 91 3 chr1 80666222 80666519 -161997834 + MER33 DNA MER1_type 1 323 -1 201 238 238 0 chr1 80666634 80666697 -161997656 - MIR SINE MIR -155 107 30 625 296 80 9 chr1 80666778 80666991 -161997362 - MIR SINE MIR -28 234 7 278 280 126 42 chr1 80667004 80667147 -161997206 + MER5B DNA MER1_type 22 176 -2 1797 164 3 3 chr1 80667214 80667522 -161996831 - AluJo SINE Alu 0 308 1 28 48 0 0 chr1 80667526 80667568 -161996785 + AT_rich Low_complexity Low_complexity 1 42 0 186 300 0 0 chr1 80669368 80669408 -161994945 + L2 LINE L2 3259 3298 -15 1865 96 0 16 chr1 80669413 80669662 -161994691 + AluSg SINE Alu 35 279 -31 234 140 0 40 chr1 80669662 80669706 -161994647 + AluSg SINE Alu 259 300 -1 233 258 65 0 chr1 80669971 80670033 -161994320 - MIR SINE MIR -74 188 123 2025 143 3 0 chr1 80670424 80670740 -161993613 + AluSq SINE Alu 1 317 0 356 202 81 61 chr1 80671578 80671677 -161992676 - MIR3 SINE MIR -7 201 101 409 346 74 48 chr1 80671763 80671994 -161992359 - L2 LINE L2 -88 3184 2948 872 189 121 0 chr1 80672229 80672419 -161991934 - MER58A DNA MER1_type -8 216 4 1256 199 188 40 chr1 80672453 80672874 -161991479 + MLT1D LTR MaLR 22 504 -1 405 347 27 0 chr1 80673805 80673952 -161990401 - MIR SINE MIR -65 197 47 207 182 0 0 chr1 80674001 80674034 -161990319 + polypyrimidine Low_complexity Low_complexity 6 38 0 194 409 61 26 chr1 80674042 80674157 -161990196 - L2 LINE L2 -25 3247 3129 557 246 204 14 chr1 80674179 80674399 -161989954 - MIR SINE MIR 0 262 1 187 276 121 0 chr1 80674632 80674690 -161989663 - L2 LINE L2 -20 3252 3188 622 309 35 10 chr1 80674764 80674965 -161989388 + MIR3 SINE MIR 3 208 0 397 262 25 33 chr1 80675398 80675520 -161988833 - MIR SINE MIR -111 151 31 344 290 92 8 chr1 80675656 80675787 -161988566 - MIR SINE MIR -25 237 96 1118 213 20 42 chr1 80676445 80676794 -161987559 + L1ME3A LINE L1 5821 6165 -5 303 236 79 57 chr1 80676985 80677125 -161987228 + MIR SINE MIR 33 175 -87 192 77 0 0 chr1 80677325 80677351 -161987002 + (CAA)n Simple_repeat Simple_repeat 2 27 0 234 105 0 0 chr1 80677999 80678037 -161986316 + (TC)n Simple_repeat Simple_repeat 1 38 0 346 353 72 0 chr1 80678324 80678477 -161985876 + MIR3 SINE MIR 35 198 -10 305 435 16 16 chr1 80678480 80678788 -161985565 + L2 LINE L2 2343 2650 -664 527 157 118 56 chr1 80679580 80679758 -161984595 + MER53 DNA DNA 1 189 0 417 262 118 84 chr1 80679852 80680173 -161984180 + L2 LINE L2 2944 3275 -38 188 320 0 40 chr1 80680232 80680307 -161984046 - L2 LINE L2 -173 3099 3028 366 238 12 0 chr1 80680792 80680876 -161983477 + MER58A DNA MER1_type 37 121 0 1201 121 51 105 chr1 80681556 80681869 -161982484 + L1MA9 LINE L1 6013 6308 -4 240 309 113 101 chr1 80681953 80682299 -161982054 - L2 LINE L2 -16 3256 2907 298 315 42 21 chr1 80682436 80682579 -161981774 + MIR SINE MIR 67 212 -50 329 256 25 27 chr1 80683547 80683705 -161980648 + MIR SINE MIR 1 157 -63 229 270 180 0 chr1 80684433 80684522 -161979831 + L2 LINE L2 3168 3272 0 329 294 105 28 chr1 80684526 80684669 -161979684 + MIR3 SINE MIR 7 160 -48 649 172 66 7 chr1 80685231 80685382 -161978971 + L1MA5 LINE L1 3903 4062 -2084 4689 137 25 4 chr1 80685382 80686193 -161978160 + L1MA5 LINE L1 5465 6293 -7 410 293 144 33 chr1 80686500 80686715 -161977638 + MIR SINE MIR 12 250 -12 667 184 129 0 chr1 80687344 80687491 -161976862 + MSTD LTR MaLR 6 171 -225 23 33 0 0 chr1 80687499 80687529 -161976824 + AT_rich Low_complexity Low_complexity 1 30 0 284 289 72 10 chr1 80688388 80688485 -161975868 - L2 LINE L2 -15 3298 3196 645 288 54 5 chr1 80688501 80688685 -161975668 - MIR SINE MIR -69 193 1 381 312 120 87 chr1 80688848 80689239 -161975114 - L2 LINE L2 -6 3266 2863 500 264 106 14 chr1 80689336 80689413 -161974940 - MER112 DNA MER1_type -32 228 159 1751 164 55 0 chr1 80689413 80689705 -161974648 + AluSx SINE Alu 1 308 -4 231 88 0 0 chr1 80689705 80689739 -161974614 + (AATAG)n Simple_repeat Simple_repeat 4 37 0 500 264 106 14 chr1 80689739 80689868 -161974485 - MER112 DNA MER1_type -100 160 2 2158 116 0 13 chr1 80690907 80691210 -161973143 - AluSx SINE Alu -13 299 1 188 261 31 46 chr1 80691558 80691623 -161972730 - MIR3 SINE MIR -52 156 93 221 170 0 85 chr1 80691641 80691688 -161972665 + L2 LINE L2 3255 3297 -16 350 287 19 10 chr1 80692512 80692685 -161971668 - MIR SINE MIR -2 260 32 466 288 125 5 chr1 80692722 80692906 -161971447 + MIR SINE MIR 57 262 0 237 254 0 28 chr1 80693008 80693079 -161971274 + MER5B DNA MER1_type 1 69 -109 812 319 4 11 chr1 80693757 80694017 -161970336 + MIR SINE MIR 2 259 -3 184 392 33 17 chr1 80694502 80694622 -161969731 + L2 LINE L2 1167 1288 -2026 320 214 146 0 chr1 80694724 80694813 -161969540 + MIR SINE MIR 157 258 -4 979 302 88 60 chr1 80694997 80695757 -161968596 + L2 LINE L2 2299 3081 -191 995 185 27 40 chr1 80695844 80696066 -161968287 - AluJo SINE Alu -7 305 87 281 244 141 0 chr1 80696072 80696150 -161968203 + L2 LINE L2 3225 3313 0 633 244 59 80 chr1 80696628 80696717 -161967636 - MIR SINE MIR -14 248 159 2407 156 24 9 chr1 80696717 80697139 -161967214 + MSTA LTR MaLR 1 428 0 1607 173 48 24 chr1 80697140 80697435 -161966918 - AluJo SINE Alu -10 302 1 633 244 59 80 chr1 80697435 80697581 -161966772 - MIR SINE MIR -102 160 16 415 226 78 26 chr1 80697689 80697804 -161966549 - L2 LINE L2 -1 3312 3192 2161 137 13 16 chr1 80699417 80699790 -161964563 + L1PB4 LINE L1 5783 6154 -2 423 156 25 113 chr1 80699801 80699961 -161964392 - L1M4 LINE L1 -467 5717 5572 272 226 16 16 chr1 80700074 80700136 -161964217 - MIR SINE MIR -125 137 76 906 198 18 0 chr1 80700455 80700622 -161963731 - FAM SINE Alu -5 170 1 24 53 0 0 chr1 80700874 80700912 -161963441 + AT_rich Low_complexity Low_complexity 1 38 0 293 295 40 107 chr1 80701052 80701201 -161963152 + L2 LINE L2 3134 3272 0 299 65 22 0 chr1 80701227 80701273 -161963080 + (TC)n Simple_repeat Simple_repeat 2 48 0 192 349 0 0 chr1 80701592 80701658 -161962695 + L2 LINE L2 3207 3272 0 300 111 0 0 chr1 80701735 80701780 -161962573 + (TA)n Simple_repeat Simple_repeat 2 46 0 500 272 98 54 chr1 80701785 80702009 -161962344 - MIR SINE MIR 0 262 29 353 303 101 8 chr1 80702401 80702520 -161961833 - MIR3 SINE MIR -70 138 9 257 311 0 14 chr1 80703136 80703210 -161961143 + MIR SINE MIR 20 92 -170 198 371 30 35 chr1 80703212 80703409 -161960944 + MIR SINE MIR 51 246 -16 328 297 122 70 chr1 80703559 80703788 -161960565 - L3 LINE CR1 -28 1549 1309 1684 194 70 5 chr1 80705116 80705487 -161958866 + MLT2C1 LTR ERVL 3 397 0 1603 112 54 5 chr1 80705510 80705733 -161958620 - AluSx SINE Alu -19 293 60 314 156 16 0 chr1 80706242 80706306 -161958047 + (CA)n Simple_repeat Simple_repeat 1 65 0 247 267 33 22 chr1 80706972 80707062 -161957291 - L2 LINE L2 0 3313 3223 797 297 59 8 chr1 80707075 80707311 -161957042 - MIR SINE MIR 0 262 15 2293 112 0 0 chr1 80707440 80707766 -161956587 + AluSg SINE Alu 1 326 0 339 346 67 24 chr1 80707766 80708064 -161956289 + L2 LINE L2 2701 3057 -215 199 197 0 40 chr1 80708084 80708160 -161956193 + (TAA)n Simple_repeat Simple_repeat 2 74 0 470 229 25 8 chr1 80708176 80708294 -161956059 - MIR SINE MIR -27 235 116 406 347 16 0 chr1 80708369 80708490 -161955863 + L2 LINE L2 3150 3272 0 429 319 44 61 chr1 80708717 80708951 -161955402 + MIR SINE MIR 3 232 -30 770 241 97 5 chr1 80710400 80710595 -161953758 - MIR SINE MIR -39 223 11 1225 113 5 62 chr1 80710661 80710855 -161953498 + AluSx SINE Alu 1 183 -129 215 295 47 67 chr1 80711277 80711426 -161952927 - L2 LINE L2 -298 2974 2829 1991 93 0 21 chr1 80711549 80711828 -161952525 + AluSc SINE Alu 36 308 -1 241 260 0 26 chr1 80713776 80713853 -161950500 + T-rich Low_complexity Low_complexity 3 77 0 308 379 57 44 chr1 80715588 80715886 -161948467 - L2 LINE L2 -16 3256 2955 2420 97 0 0 chr1 80715909 80716217 -161948136 - AluSg SINE Alu -2 308 1 22 0 0 0 chr1 80717458 80717480 -161946873 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr1 80717967 80717988 -161946365 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 420 272 9 9 chr1 80718945 80719059 -161945294 - MIR3 SINE MIR -14 194 81 1073 170 16 0 chr1 80719356 80719538 -161944815 - MER5A DNA MER1_type -4 185 1 380 298 87 12 chr1 80719610 80719771 -161944582 - MER5A DNA MER1_type 0 189 6 233 225 0 63 chr1 80719956 80720051 -161944302 + MIR SINE MIR 62 148 -60 553 260 40 7 chr1 80720114 80720264 -161944089 - MIR SINE MIR -103 159 5 346 321 69 30 chr1 80720528 80720659 -161943694 + L2 LINE L2 3178 3313 0 258 360 22 22 chr1 80720954 80721093 -161943260 + L2 LINE L2 3127 3265 -7 513 365 62 32 chr1 80721198 80721568 -161942785 + L2 LINE L2 2890 3270 -2 245 353 128 0 chr1 80721819 80721921 -161942432 + L2 LINE L2 3156 3270 -2 335 299 39 16 chr1 80722129 80722256 -161942097 + MIR3 SINE MIR 7 136 -72 188 387 0 0 chr1 80722271 80722346 -161942007 - MIR SINE MIR -6 256 182 246 116 0 0 chr1 80723208 80723251 -161941102 + (TG)n Simple_repeat Simple_repeat 2 44 0 185 305 195 33 chr1 80724056 80724266 -161940087 + L2 LINE L2 2525 2768 -546 314 324 29 37 chr1 80724291 80724427 -161939926 + MIR SINE MIR 20 154 -108 720 246 144 0 chr1 80724545 80724732 -161939621 - MIR SINE MIR -1 261 48 625 362 78 19 chr1 80724837 80725196 -161939157 - L2 LINE L2 -1 3271 2892 189 274 48 16 chr1 80725209 80725271 -161939082 + L2 LINE L2 3194 3257 -56 364 257 110 9 chr1 80725274 80725383 -161938970 + L2 LINE L2 3190 3309 -4 267 79 0 0 chr1 80725434 80725472 -161938881 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 234 310 80 75 chr1 80725874 80726061 -161938292 + MIR3 SINE MIR 21 208 0 260 367 11 0 chr1 80726175 80726265 -161938088 - MIR3 SINE MIR -52 156 66 242 313 12 0 chr1 80727884 80727967 -161936386 - L2 LINE L2 -3 3269 3186 634 259 68 64 chr1 80728172 80728392 -161935961 - MIR SINE MIR -34 228 8 1599 173 10 42 chr1 80728416 80728722 -161935631 - AluJb SINE Alu -16 296 1 2258 121 3 13 chr1 80729218 80729606 -161934747 + AluSp SINE Alu 1 385 0 309 118 0 0 chr1 80730332 80730383 -161933970 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr1 80730912 80730940 -161933413 + AT_rich Low_complexity Low_complexity 1 28 0 599 251 191 15 chr1 80731353 80731552 -161932801 + MIR SINE MIR 5 238 -24 1883 129 96 12 chr1 80731611 80731635 -161932718 + MER47A DNA MER2_type 3 24 -2299 1627 169 51 4 chr1 80731635 80731936 -161932417 - AluJb SINE Alu 0 314 1 1883 129 96 12 chr1 80731936 80732244 -161932109 + MER47A DNA MER2_type 24 364 -2 370 329 147 54 chr1 80732447 80732854 -161931499 + L2 LINE L2 2463 2907 -407 641 242 145 0 chr1 80733252 80733438 -161930915 + MIR SINE MIR 39 251 -11 23 33 0 0 chr1 80734845 80734875 -161929478 + AT_rich Low_complexity Low_complexity 1 30 0 200 241 52 17 chr1 80735055 80735113 -161929240 + MIR3 SINE MIR 149 208 0 428 234 177 14 chr1 80735650 80735791 -161928562 + MIR SINE MIR 93 256 -6 298 294 24 0 chr1 80735917 80736002 -161928351 + L2 LINE L2 3185 3271 -1 454 245 44 78 chr1 80737224 80737428 -161926925 - MIR SINE MIR -32 230 34 463 277 52 14 chr1 80738319 80738499 -161925854 - MIR SINE MIR -41 221 38 31 58 0 0 chr1 80740249 80740301 -161924052 + AT_rich Low_complexity Low_complexity 1 52 0 402 295 97 56 chr1 80740927 80741266 -161923087 + L2 LINE L2 2944 3296 -17 402 363 44 28 chr1 80742414 80742662 -161921691 + L2 LINE L2 3018 3269 -3 834 141 7 0 chr1 80742975 80743110 -161921243 + AluSg/x SINE Alu 172 307 -3 21 36 0 0 chr1 80743136 80743164 -161921189 + AT_rich Low_complexity Low_complexity 1 28 0 549 255 196 21 chr1 80743864 80744087 -161920266 - L2 LINE L2 0 3313 3050 205 355 0 0 chr1 80744087 80744149 -161920204 + MER91B DNA MER1_type 1 62 -128 678 322 145 34 chr1 80744956 80745493 -161918860 + L2 LINE L2 2367 2963 -351 326 286 0 0 chr1 80745474 80745565 -161918788 + L2 LINE L2 3223 3313 0 * 280 374 67 44 chr1 80745592 80745889 -161918464 + L2 LINE L2 2969 3272 0 469 343 43 14 chr1 80746664 80746871 -161917482 - MIR SINE MIR -16 246 34 444 306 135 9 chr1 80746878 80747100 -161917253 + L2 LINE L2 1458 1707 -1607 593 199 0 28 chr1 80747129 80747270 -161917083 + L1MEc LINE L1 1644 1780 -4616 940 230 64 9 chr1 80747277 80747603 -161916750 + L1MEc LINE L1 1826 2169 -4227 568 259 155 16 chr1 80747628 80747945 -161916408 + MER57A LTR ERV1 43 403 0 3688 232 74 18 chr1 80747945 80749122 -161915231 + L1MEc LINE L1 2179 3445 -2770 2125 129 0 0 chr1 80749122 80749409 -161914944 + AluSx SINE Alu 1 287 -25 3688 232 74 18 chr1 80749409 80749731 -161914622 + L1MEc LINE L1 3445 3748 -2467 553 229 91 50 chr1 80749875 80750178 -161914175 + L1ME1 LINE L1 5863 6333 -1 1146 293 91 17 chr1 80750199 80750674 -161913679 + L2 LINE L2 1730 2239 -1075 1972 114 45 10 chr1 80752093 80752382 -161911971 - AluSg SINE Alu -11 299 1 523 268 95 0 chr1 80753203 80753371 -161910982 + MIR SINE MIR 33 216 -46 228 256 26 13 chr1 80753789 80753837 -161910516 + MLT1L LTR MaLR 205 256 -359 2356 65 0 7 chr1 80753837 80754128 -161910225 + AluY SINE Alu 1 289 -22 228 256 26 13 chr1 80754128 80754157 -161910196 + MLT1L LTR MaLR 256 283 -332 285 169 15 15 chr1 80754158 80754223 -161910130 - MER116 DNA Mariner 0 80 16 257 316 107 28 chr1 80754281 80754496 -161909857 + MLT1J LTR MaLR 230 461 -50 2166 53 8 19 chr1 80754502 80754768 -161909585 - AluY SINE Alu -13 298 36 707 250 62 11 chr1 80755021 80755197 -161909156 - L2 LINE L2 -348 2966 2782 453 323 101 0 chr1 80755197 80755395 -161908958 - L2 LINE L2 -838 2476 2259 522 305 23 12 chr1 80755624 80755880 -161908473 - MIR SINE MIR 0 262 4 1729 309 69 22 chr1 80755929 80756924 -161907429 + L2 LINE L2 2276 3308 -5 22 35 0 0 chr1 80756998 80757027 -161907326 + AT_rich Low_complexity Low_complexity 1 29 0 2686 307 137 43 chr1 80757761 80758423 -161905930 - L2 LINE L2 -1352 1962 1364 1980 136 3 0 chr1 80758423 80758709 -161905644 - AluSx SINE Alu -25 287 1 2686 307 137 43 chr1 80758709 80759764 -161904589 - L2 LINE L2 -1950 1364 83 581 284 110 57 chr1 80759836 80760100 -161904253 + L2 LINE L2 3019 3296 -17 609 245 37 43 chr1 80760338 80760526 -161903827 - MIR SINE MIR -3 259 73 320 279 27 36 chr1 80760680 80760791 -161903562 - MIR SINE MIR -6 256 147 710 234 73 88 chr1 80760831 80761228 -161903125 + MLT1J LTR MaLR 121 511 0 258 394 24 24 chr1 80761479 80761649 -161902704 + MIR SINE MIR 20 189 -73 226 316 26 8 chr1 80762037 80762154 -161902199 + LTR67 LTR ERVL 435 553 -4 251 391 70 0 chr1 80764307 80764422 -161899931 - L2 LINE L2 -7 3265 3143 21 82 0 0 chr1 80765432 80765481 -161898872 + AT_rich Low_complexity Low_complexity 1 49 0 252 310 52 35 chr1 80765591 80765707 -161898646 + LTR33A LTR ERVL 73 190 -333 284 277 0 0 chr1 80765747 80765812 -161898541 + LTR33 LTR ERVL 321 385 -136 252 109 0 22 chr1 80766795 80766841 -161897512 - MLT2C2 LTR ERVL 0 464 420 * 260 241 0 0 chr1 80766838 80766896 -161897457 - MLT2B1 LTR ERVL -352 168 111 62 26 0 0 chr1 80766903 80766979 -161897374 + AT_rich Low_complexity Low_complexity 1 76 0 460 146 21 0 chr1 80766993 80767089 -161897264 - MLT2B2 LTR ERVL -417 98 1 292 310 39 23 chr1 80768267 80768396 -161895957 - L3 LINE CR1 -762 815 685 * 321 259 152 36 chr1 80768395 80768507 -161895846 + MIR SINE MIR 26 150 -112 28 29 0 0 chr1 80768508 80768543 -161895810 + AT_rich Low_complexity Low_complexity 1 35 0 646 283 166 35 chr1 80770428 80770863 -161893490 - L2 LINE L2 -9 3304 2813 463 297 47 0 chr1 80771422 80771570 -161892783 + MIR SINE MIR 67 221 -41 810 249 149 4 chr1 80771628 80771877 -161892476 - L2 LINE L2 -1771 1543 1259 2421 110 0 0 chr1 80772522 80772832 -161891521 - AluSg SINE Alu 0 310 1 280 215 0 0 chr1 80772834 80772899 -161891454 + LTR67 LTR ERVL 489 553 -4 1698 196 32 23 chr1 80773143 80773635 -161890718 + L1ME2 LINE L1 5676 6332 -2 259 274 12 48 chr1 80773697 80773781 -161890572 + MIR SINE MIR 24 104 -158 475 284 120 19 chr1 80774152 80774360 -161889993 + MIR SINE MIR 21 249 -13 219 274 65 0 chr1 80776431 80776493 -161887860 + MIR SINE MIR 39 104 -158 40324 45 1 1 chr1 80778151 80783337 -161881016 + L1PA4 LINE L1 1 5191 -955 7297 34 2 9 chr1 80783573 80784547 -161879806 + L1PA4 LINE L1 5200 6167 0 22 35 0 0 chr1 80784789 80784818 -161879535 + AT_rich Low_complexity Low_complexity 1 29 0 2980 26 0 0 chr1 80786172 80786520 -161877833 - L1PA2 LINE L1 -1 6154 5807 429 273 114 0 chr1 80786784 80786916 -161877437 - MIR3 SINE MIR -14 194 48 412 288 72 13 chr1 80787451 80787604 -161876749 - MIR SINE MIR -89 173 12 225 350 62 0 chr1 80788275 80788372 -161875981 - L2 LINE L2 -14 3258 3156 769 322 124 8 chr1 80788914 80789293 -161875060 + L3b LINE CR1 1152 1574 -9 425 238 233 25 chr1 80790124 80790326 -161874027 + MIR SINE MIR 10 253 -9 23 0 0 0 chr1 80790826 80790849 -161873504 + AT_rich Low_complexity Low_complexity 1 23 0 2117 120 42 31 chr1 80791107 80791466 -161872887 + THE1B LTR MaLR 1 363 -1 32612 58 2 2 chr1 80792158 80796501 -161867852 + L1PA4 LINE L1 1 4343 -1803 15675 39 6 0 chr1 80796601 80799346 -161865007 + L1PA4 LINE L1 3362 6115 -40 7438 28 7 1 chr1 80799477 80801157 -161863196 + L1PA4 LINE L1 4465 6150 -5 522 269 71 0 chr1 80801532 80801673 -161862680 + L2 LINE L2 3163 3313 0 33 56 0 0 chr1 80803985 80804039 -161860314 + AT_rich Low_complexity Low_complexity 1 54 0 332 302 101 7 chr1 80804548 80804687 -161859666 + L3b LINE CR1 1239 1390 -193 315 319 152 14 chr1 80805428 80805638 -161858715 + L2 LINE L2 2575 2813 -501 2270 83 7 3 chr1 80806850 80807150 -161857203 + AluSq SINE Alu 1 301 -12 32 81 0 0 chr1 80807442 80807516 -161856837 + AT_rich Low_complexity Low_complexity 1 74 0 190 260 52 39 chr1 80807662 80807739 -161856614 + MIR SINE MIR 116 193 -69 22 56 0 0 chr1 80807785 80807821 -161856532 + AT_rich Low_complexity Low_complexity 1 36 0 531 272 0 8 chr1 80808607 80808732 -161855621 - L2 LINE L2 0 3313 3190 294 306 153 82 chr1 80808815 80809155 -161855198 + L2 LINE L2 2909 3272 0 1591 149 149 68 chr1 80810853 80811206 -161853147 + MSTA LTR MaLR 1 393 -35 2213 82 29 0 chr1 80811206 80811522 -161852831 - AluSg SINE Alu 0 324 1 1591 149 149 68 chr1 80811522 80811562 -161852791 + MSTA LTR MaLR 393 428 0 1689 197 0 3 chr1 80811911 80812220 -161852133 + AluJo SINE Alu 1 308 -4 196 339 0 0 chr1 80813040 80813105 -161851248 + L2 LINE L2 3208 3272 0 4892 139 12 0 chr1 80813271 80814034 -161850319 + L1PA16 LINE L1 5386 6157 -9 383 295 174 0 chr1 80814175 80814324 -161850029 - MIR SINE MIR -14 248 74 1321 258 100 9 chr1 80817196 80817822 -161846531 + L2 LINE L2 2626 3313 0 695 174 65 0 chr1 80818338 80818493 -161845860 - L1MB7 LINE L1 -2 6182 6018 4745 197 34 23 chr1 80818509 80819237 -161845116 - L1MB7 LINE L1 -228 5950 5231 2165 121 0 0 chr1 80819237 80819535 -161844818 - AluSg SINE Alu -12 298 1 4745 197 34 23 chr1 80819535 80820538 -161843815 - L1MB7 LINE L1 -947 5231 4202 364 314 21 29 chr1 80820767 80820907 -161843446 - MIR SINE MIR -71 191 53 2436 67 3 19 chr1 80820928 80821242 -161843111 + AluY SINE Alu 1 309 -2 2331 93 3 3 chr1 80821391 80821731 -161842622 - AluSg SINE Alu 0 340 1 297 283 40 20 chr1 80822582 80822681 -161841672 - MIR SINE MIR -50 212 112 185 292 177 0 chr1 80822776 80822889 -161841464 - MIR SINE MIR -81 181 49 236 365 10 0 chr1 80822930 80823026 -161841327 - MIR SINE MIR -82 180 84 1372 148 8 13 chr1 80823205 80823442 -161840911 + MER46A DNA MER2_type 1 236 0 291 54 0 0 chr1 80823653 80823690 -161840663 + (A)n Simple_repeat Simple_repeat 1 37 0 680 316 44 4 chr1 80823934 80824159 -161840194 - MIR SINE MIR -9 253 20 189 162 27 0 chr1 80824290 80824327 -161840026 + MIR SINE MIR 118 155 -107 24 0 0 0 chr1 80824358 80824382 -161839971 + AT_rich Low_complexity Low_complexity 1 24 0 213 65 0 0 chr1 80824680 80824711 -161839642 + (TG)n Simple_repeat Simple_repeat 2 32 0 182 229 197 0 chr1 80826091 80826152 -161838201 + MIR SINE MIR 178 250 -12 1876 122 30 30 chr1 80826447 80826742 -161837611 + AluSg SINE Alu 1 295 -15 4673 137 21 1 chr1 80826748 80827524 -161836829 - L1MA6 LINE L1 0 6300 5510 754 173 175 11 chr1 80827529 80827787 -161836566 - L1MA6 LINE L1 -743 5403 5133 1495 274 247 25 chr1 80828174 80829483 -161834870 - L2 LINE L2 0 3313 1630 221 320 96 16 chr1 80830119 80830244 -161834109 - L2 LINE L2 -554 2760 2626 196 308 103 0 chr1 80830256 80830334 -161834019 + L2 LINE L2 3210 3295 -18 285 151 0 0 chr1 80830336 80830389 -161833964 + (TA)n Simple_repeat Simple_repeat 1 53 0 681 157 0 9 chr1 80830843 80830958 -161833395 - AluJ SINE Alu -16 296 183 * 692 165 24 0 chr1 80830949 80831076 -161833277 - AluJ SINE Alu -170 142 13 258 304 94 22 chr1 80831651 80831789 -161832564 - L2 LINE L2 -6 3307 3160 261 378 74 7 chr1 80832304 80832439 -161831914 + L2 LINE L2 3128 3271 -1 219 69 0 0 chr1 80832470 80832499 -161831854 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2132 218 12 2 chr1 80832906 80833314 -161831039 + MLT2C2 LTR ERVL 1 412 -52 270 0 0 0 chr1 80833316 80833346 -161831007 + (TG)n Simple_repeat Simple_repeat 2 31 0 310 123 0 92 chr1 80833490 80833555 -161830798 + MLT2B1 LTR ERVL 456 519 -1 450 325 83 0 chr1 80834204 80834361 -161829992 - L2 LINE L2 0 3272 3103 3631 224 12 9 chr1 80834867 80835725 -161828628 + L1MB7 LINE L1 3505 4364 -1782 3556 196 71 43 chr1 80835723 80836190 -161828163 + L1MB7 LINE L1 4572 5024 -1160 * 1639 167 4 0 chr1 80836190 80836453 -161827900 - AluJo SINE Alu -24 288 25 3556 196 71 43 chr1 80836453 80837575 -161826778 + L1MB7 LINE L1 5024 6184 0 195 0 56 28 chr1 80837740 80837776 -161826577 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1781 171 4 0 chr1 80837780 80838060 -161826293 - AluSx SINE Alu -31 281 1 347 264 72 57 chr1 80838567 80838759 -161825594 + MIR3 SINE MIR 2 196 -64 242 194 194 0 chr1 80839418 80839490 -161824863 - MER91C DNA MER1_type -19 121 36 2466 71 0 3 chr1 80839565 80839874 -161824479 + AluY SINE Alu 1 308 -3 184 250 42 0 chr1 80840001 80840049 -161824304 + MIR3 SINE MIR 139 188 -20 249 322 78 0 chr1 80840829 80840919 -161823434 + L2 LINE L2 3169 3265 -7 1027 145 88 53 chr1 80841310 80841538 -161822815 - MER46A DNA MER2_type 0 236 1 21 0 0 0 chr1 80841614 80841635 -161822718 + AT_rich Low_complexity Low_complexity 1 21 0 284 329 92 59 chr1 80841658 80841810 -161822543 + L2 LINE L2 3116 3272 0 624 254 86 103 chr1 80841985 80842394 -161821959 - MLT1J LTR MaLR 0 511 110 2190 168 40 17 chr1 80843760 80844182 -161820171 + Tigger2a DNA MER2_type 2 433 -1 216 0 0 0 chr1 80844680 80844704 -161819649 + (TA)n Simple_repeat Simple_repeat 2 25 0 370 301 37 15 chr1 80844758 80844894 -161819459 + L2 LINE L2 3133 3271 -1 207 256 0 0 chr1 80844923 80844966 -161819387 + (CA)n Simple_repeat Simple_repeat 2 44 0 183 42 0 0 chr1 80846272 80846296 -161818057 + (T)n Simple_repeat Simple_repeat 1 24 0 2295 246 38 5 chr1 80846366 80846968 -161817385 + MLT1E2 LTR MaLR 5 626 0 2068 95 0 0 chr1 80847531 80847795 -161816558 - AluSq SINE Alu -49 264 1 526 326 92 9 chr1 80847912 80848139 -161816214 + MIR SINE MIR 4 249 -13 213 277 0 0 chr1 80848165 80848212 -161816141 + L2 LINE L2 3210 3256 -16 257 345 26 32 chr1 80848364 80848527 -161815826 + MIR SINE MIR 33 193 -69 305 298 158 71 chr1 80848557 80849258 -161815095 + L2 LINE L2 1369 2130 -1184 2071 106 40 23 chr1 80849307 80849610 -161814743 - AluSx SINE Alu -4 308 1 271 331 76 33 chr1 80850309 80850493 -161813860 + L2 LINE L2 2238 2429 -885 224 376 35 65 chr1 80850869 80851271 -161813082 + L2 LINE L2 2882 3271 -1 262 317 174 25 chr1 80853606 80853767 -161810586 - MIR SINE MIR -77 185 1 585 293 129 19 chr1 80853853 80854116 -161810237 + L2 LINE L2 2684 2975 -339 484 235 33 33 chr1 80854181 80854334 -161810019 + L2 LINE L2 3161 3313 0 468 0 0 0 chr1 80854390 80854442 -161809911 + (TA)n Simple_repeat Simple_repeat 2 53 0 184 355 118 0 chr1 80855042 80855118 -161809235 + MIR SINE MIR 58 142 -120 829 293 36 55 chr1 80855123 80855563 -161808790 - LTR16A LTR ERVL -18 432 1 243 61 0 0 chr1 80855672 80855705 -161808648 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 264 245 46 93 chr1 80856259 80856345 -161808008 - MIR SINE MIR -66 196 118 2787 6 0 10 chr1 80856345 80856657 -161807696 - AluYa5 SINE Alu -2 309 1 264 245 46 93 chr1 80856657 80856721 -161807632 - MIR SINE MIR -144 118 53 2145 118 48 34 chr1 80857026 80857383 -161806970 + THE1B LTR MaLR 1 362 -2 1208 227 134 67 chr1 80858690 80859446 -161804907 - L1MD3 LINE L1 -13 7982 7024 2252 104 3 0 chr1 80859931 80860229 -161804124 + AluSq SINE Alu 5 303 -10 192 179 0 0 chr1 80860281 80860320 -161804033 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1475 104 46 17 chr1 80860329 80860570 -161803783 - MER6 DNA MER2_type 0 865 618 2237 112 0 0 chr1 80860571 80860866 -161803487 + AluSg SINE Alu 1 295 -15 229 143 48 0 chr1 80860936 80860978 -161803375 + Alu SINE Alu 250 293 -7 1634 201 68 15 chr1 80860989 80861088 -161803265 - MER6 DNA MER2_type -524 341 249 336 48 0 0 chr1 80861088 80861130 -161803223 + (CA)n Simple_repeat Simple_repeat 1 42 0 1634 201 68 15 chr1 80861130 80861354 -161802999 - MER6 DNA MER2_type -616 249 1 281 358 67 15 chr1 80861434 80861568 -161802785 + MIR3 SINE MIR 62 202 -6 377 153 14 0 chr1 80862466 80862538 -161801815 + GA-rich Low_complexity Low_complexity 4 76 0 2320 113 0 0 chr1 80863028 80863337 -161801016 + AluSq SINE Alu 1 309 -4 710 304 24 4 chr1 80863727 80863977 -161800376 - MIR SINE MIR -3 259 5 237 182 13 26 chr1 80863997 80864074 -161800279 + GA-rich Low_complexity Low_complexity 4 79 0 248 239 43 54 chr1 80865193 80865285 -161799068 - Charlie8 DNA MER1_type 0 2417 240 275 252 84 69 chr1 80865397 80865528 -161798825 - Charlie8 DNA MER1_type -2283 134 2 216 300 163 0 chr1 80865806 80865886 -161798467 - MIR3 SINE MIR -10 198 106 1968 166 86 27 chr1 80865912 80866353 -161798000 - MLT1C LTR MaLR 0 467 1 249 298 139 32 chr1 80867083 80867241 -161797112 - L2 LINE L2 -210 3062 2888 4668 31 9 0 chr1 80867310 80867860 -161796493 - L1PA5 LINE L1 -3 6151 5597 2596 29 0 0 chr1 80867860 80868167 -161796186 + L1PA5 LINE L1 5290 5596 -559 1749 158 0 7 chr1 80869172 80869451 -161794902 + AluJb SINE Alu 2 278 -34 501 234 62 8 chr1 80869695 80869823 -161794530 + HAL1 LINE L1 777 911 -1596 458 297 79 6 chr1 80870644 80870809 -161793544 - MER5B DNA MER1_type -1 177 1 193 411 36 9 chr1 80870925 80871037 -161793316 + L3 LINE CR1 1304 1418 -159 2234 123 0 0 chr1 80871101 80871402 -161792951 + AluSx SINE Alu 3 303 -9 21 36 0 0 chr1 80871590 80871618 -161792735 + AT_rich Low_complexity Low_complexity 1 28 0 461 263 86 70 chr1 80871634 80871707 -161792646 + MIR SINE MIR 73 143 -119 2228 172 0 3 chr1 80871707 80872073 -161792280 - MLT1A1 LTR MaLR 0 365 1 461 263 86 70 chr1 80872073 80872185 -161792168 + MIR SINE MIR 143 261 -1 322 281 67 22 chr1 80873099 80873234 -161791119 + MIR3 SINE MIR 25 165 -43 22 35 0 0 chr1 80873704 80873733 -161790620 + AT_rich Low_complexity Low_complexity 1 29 0 2223 178 18 7 chr1 80874349 80874787 -161789566 + L1MB3 LINE L1 5740 6182 -1 668 289 110 9 chr1 80875239 80875467 -161788886 - MIR SINE MIR -3 259 9 254 271 118 0 chr1 80875482 80875567 -161788786 - MIR SINE MIR 0 262 168 745 193 21 0 chr1 80876188 80876333 -161788020 + L1PB4 LINE L1 6006 6153 -3 2032 117 100 14 chr1 80877324 80877729 -161786624 - L1M LINE L1 -743 5403 4996 1502 127 143 40 chr1 80877736 80878058 -161786295 + L1MA8 LINE L1 5930 6284 -7 21573 33 0 0 chr1 80878706 80882093 -161782260 + L1PA3 LINE L1 2762 6152 -3 242 318 0 0 chr1 80883274 80883337 -161781016 + MIR3 SINE MIR 115 177 -31 4749 48 0 0 chr1 80883834 80884516 -161779837 + L1P2 LINE L1 4787 5468 -686 246 158 0 0 chr1 80884617 80884655 -161779698 + MER66B LTR ERV1 449 486 0 524 186 12 24 chr1 80884660 80884800 -161779553 - L1M4 LINE L1 -469 5705 5564 391 299 96 19 chr1 80885166 80885260 -161779093 - Charlie8 DNA MER1_type -167 174 62 401 0 20 0 chr1 80885260 80885309 -161779044 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 391 299 96 19 chr1 80885309 80885371 -161778982 - Charlie8 DNA MER1_type -279 62 6 1581 167 32 3 chr1 80885393 80885675 -161778678 - L1PA16 LINE L1 0 6166 5877 473 315 119 36 chr1 80886177 80886479 -161777874 + L3 LINE CR1 456 782 -795 328 326 116 29 chr1 80886511 80886683 -161777670 - MIR SINE MIR -39 223 37 369 302 50 13 chr1 80886690 80886849 -161777504 - MLT1I LTR MaLR -2 407 243 4190 68 0 0 chr1 80886970 80887510 -161776843 + L1PA5 LINE L1 5614 6153 -1 542 305 62 73 chr1 80887835 80887990 -161776363 - L2 LINE L2 0 3313 3158 2014 127 3 0 chr1 80887990 80888274 -161776079 + AluSx SINE Alu 1 285 -27 542 305 62 73 chr1 80888274 80888489 -161775864 - L2 LINE L2 -155 3158 2947 2593 127 65 7 chr1 80888900 80889318 -161775035 + L1PA8A LINE L1 5681 6122 -9 1805 281 92 27 chr1 80889907 80890836 -161773517 + L1ME1 LINE L1 160 1148 -5248 * 3316 218 48 29 chr1 80890834 80891610 -161772743 + L1ME1 LINE L1 5324 6121 -114 850 189 154 0 chr1 80891610 80891799 -161772554 - MER33 DNA MER1_type -2262 323 164 387 0 0 0 chr1 80891799 80891842 -161772511 + (TA)n Simple_repeat Simple_repeat 1 43 0 850 189 154 0 chr1 80891842 80891932 -161772421 - MER33 DNA MER1_type -2421 164 1 3316 218 48 29 chr1 80891932 80892045 -161772308 + L1ME1 LINE L1 6121 6230 -5 2317 130 30 5 chr1 80892053 80892460 -161771893 + L1MA5A LINE L1 5875 6291 -6 27 0 0 0 chr1 80892461 80892488 -161771865 + AT_rich Low_complexity Low_complexity 1 27 0 219 237 209 2 chr1 80892835 80892935 -161771418 + MIR SINE MIR 15 131 -77 315 266 97 0 chr1 80893007 80893120 -161771233 - MIR SINE MIR -71 191 68 349 304 91 3 chr1 80893244 80893370 -161770983 + MIR SINE MIR 3 153 -55 531 236 150 26 chr1 80893370 80893603 -161770750 + MIR SINE MIR 1 262 0 349 304 91 3 chr1 80893603 80893664 -161770689 + MIR SINE MIR 153 207 -1 550 111 0 0 chr1 80893805 80893877 -161770476 + U4 snRNA snRNA 1 72 -73 763 266 225 12 chr1 80894093 80894435 -161769918 + L2 LINE L2 2898 3312 -1 399 315 67 28 chr1 80894873 80895051 -161769302 + MIR SINE MIR 20 204 -58 524 302 57 72 chr1 80895522 80895923 -161768430 + L2 LINE L2 2919 3313 0 754 157 55 44 chr1 80895945 80896141 -161768212 + MER6 DNA MER2_type -63 865 0 312 315 0 0 chr1 80897599 80897688 -161766665 - L1MC4 LINE L1 -1339 6703 6615 299 191 15 0 chr1 80897689 80897757 -161766596 + (TA)n Simple_repeat Simple_repeat 2 70 0 390 281 66 83 chr1 80898331 80898633 -161765720 + L2 LINE L2 2231 2527 -787 3498 27 0 0 chr1 80898725 80899133 -161765220 - L1PA3 LINE L1 -2 6153 5746 2504 32 0 0 chr1 80899133 80899443 -161764910 + L1P LINE L1 5027 5336 -810 282 348 119 62 chr1 80899443 80899945 -161764408 + L2 LINE L2 2616 3156 -116 458 259 86 19 chr1 80901411 80901573 -161762780 - MER5A DNA MER1_type 0 189 17 1439 165 11 0 chr1 80903390 80903650 -161760703 + L1PA16 LINE L1 5904 6166 0 281 311 47 27 chr1 80904697 80904845 -161759508 - L3b LINE CR1 -317 1266 1116 374 170 0 10 chr1 80905170 80905270 -161759083 + GA-rich Low_complexity Low_complexity 1 99 0 2119 125 0 41 chr1 80905887 80906207 -161758146 + AluSx SINE Alu 1 307 -5 294 354 0 10 chr1 80906237 80906333 -161758020 + MIR SINE MIR 57 151 -111 414 224 37 0 chr1 80906335 80906442 -161757911 - MIR SINE MIR -3 259 149 323 309 27 0 chr1 80906524 80906634 -161757719 - MIR SINE MIR -109 153 41 302 311 40 40 chr1 80906809 80906960 -161757393 - L2 LINE L2 0 3313 3163 386 225 54 54 chr1 80906981 80907110 -161757243 + MIR SINE MIR 134 262 0 2132 263 46 63 chr1 80907172 80907881 -161756472 + L1MB5 LINE L1 4941 5688 -486 465 155 0 0 chr1 80907881 80907952 -161756401 + MER66B LTR ERV1 416 486 0 2132 263 46 63 chr1 80907952 80908428 -161755925 + L1MB5 LINE L1 5688 6171 -3 482 384 83 6 chr1 80908905 80909244 -161755109 - L3 LINE CR1 -298 1279 915 281 340 211 10 chr1 80909453 80909662 -161754691 - MIR SINE MIR -11 251 1 290 348 60 64 chr1 80909948 80910181 -161754172 + L2 LINE L2 3027 3258 -14 344 356 8 0 chr1 80910901 80911033 -161753320 + MIR3 SINE MIR 73 205 -3 243 296 178 89 chr1 80913097 80913310 -161751043 + L2 LINE L2 3027 3258 -14 21 0 0 0 chr1 80914397 80914418 -161749935 + AT_rich Low_complexity Low_complexity 1 21 0 1975 34 4 0 chr1 80914783 80915021 -161749332 - L1PA4 LINE L1 -3 6152 5914 4420 32 1 6 chr1 80915021 80915825 -161748528 + L1P2 LINE L1 4984 5781 -374 21 0 0 0 chr1 80915877 80915898 -161748455 + AT_rich Low_complexity Low_complexity 1 21 0 317 354 34 17 chr1 80915958 80916133 -161748220 - MIR SINE MIR -77 185 8 32 67 0 0 chr1 80916742 80916802 -161747551 + AT_rich Low_complexity Low_complexity 1 60 0 526 250 71 71 chr1 80917088 80917272 -161747081 + MIR3 SINE MIR 16 199 -9 417 219 1 19 chr1 80917496 80917601 -161746752 + HsTC2 DNA Tc2 2 1898 0 27 29 0 0 chr1 80917740 80917774 -161746579 + AT_rich Low_complexity Low_complexity 1 34 0 282 277 43 43 chr1 80918325 80918419 -161745934 + LTR33 LTR ERVL 131 224 -297 1507 80 5 0 chr1 80919818 80920019 -161744334 - L1PA8 LINE L1 0 6172 5971 1064 204 36 55 chr1 80921004 80921333 -161743020 - MER33 DNA MER1_type 0 324 2 1182 143 14 29 chr1 80921658 80921867 -161742486 + THE1B LTR MaLR 159 364 0 11371 101 9 1 chr1 80921867 80923435 -161740918 + THE1B-int LTR MaLR 1 1580 0 2205 113 21 43 chr1 80923435 80923807 -161740546 + THE1B LTR MaLR 1 364 0 286 333 81 10 chr1 80924020 80924119 -161740234 + L2 LINE L2 3166 3271 -1 1568 235 44 28 chr1 80924301 80924730 -161739623 - MLT1D LTR MaLR 0 505 70 721 0 22 0 chr1 80924732 80924821 -161739532 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 404 210 24 32 chr1 80924826 80924950 -161739403 - MLT1D LTR MaLR -175 330 208 326 282 103 45 chr1 80925840 80925996 -161738357 - MIR SINE MIR -27 235 71 402 113 200 0 chr1 80926748 80926828 -161737525 - L1MB1 LINE L1 -44 6145 6050 651 154 81 13 chr1 80926839 80926988 -161737365 + L1MA10 LINE L1 6175 6333 -1 532 250 18 0 chr1 80927270 80927382 -161736971 - MER81 DNA DNA 0 114 1 24 0 0 0 chr1 80927402 80927426 -161736927 + AT_rich Low_complexity Low_complexity 1 24 0 2128 98 3 7 chr1 80927426 80927712 -161736641 - AluSq SINE Alu -28 285 1 677 232 34 23 chr1 80927712 80927889 -161736464 + MIR SINE MIR 60 238 -24 206 292 52 10 chr1 80927916 80928012 -161736341 + MIR SINE MIR 102 201 -61 181 137 59 20 chr1 80928679 80928730 -161735623 + A-rich Low_complexity Low_complexity 3 55 0 294 319 166 6 chr1 80928740 80928897 -161735456 + MIR3 SINE MIR 13 194 -14 573 293 29 19 chr1 80929121 80929395 -161734958 - LTR16A LTR ERVL 0 450 135 23 33 0 0 chr1 80929673 80929703 -161734650 + AT_rich Low_complexity Low_complexity 1 30 0 181 156 133 0 chr1 80929917 80929962 -161734391 - MIR SINE MIR -85 177 127 414 112 0 112 chr1 80930060 80930149 -161734204 - L1PA10 LINE L1 0 6168 6090 304 345 42 21 chr1 80932024 80932166 -161732187 - MIR3 SINE MIR -27 181 37 385 325 72 24 chr1 80932549 80932715 -161731638 + MIR3 SINE MIR 13 186 -22 756 239 91 5 chr1 80933907 80934116 -161730237 - MIR SINE MIR -35 227 1 548 172 227 0 chr1 80934890 80935053 -161729300 + MER69 DNA AcHobo 2327 2526 0 363 357 128 16 chr1 80935126 80935445 -161728908 + L2 LINE L2 2560 2914 -400 204 362 92 12 chr1 80937090 80937253 -161727100 + MIR SINE MIR 47 222 -40 456 19 0 0 chr1 80939439 80939492 -161724861 + (TG)n Simple_repeat Simple_repeat 2 54 0 190 352 76 0 chr1 80939668 80939773 -161724580 - L2 LINE L2 -228 3044 2932 234 335 91 23 chr1 80941492 80941668 -161722685 - MIR SINE MIR -49 213 26 253 297 11 22 chr1 80943024 80943115 -161721238 + L2 LINE L2 3222 3311 -2 23 54 0 0 chr1 80943400 80943437 -161720916 + AT_rich Low_complexity Low_complexity 1 37 0 6737 161 32 15 chr1 80943531 80944144 -161720209 + L1MA6 LINE L1 4010 4611 -1689 2067 122 27 3 chr1 80944144 80944439 -161719914 - AluSg SINE Alu -8 302 1 6737 161 32 15 chr1 80944439 80945570 -161718783 + L1MA6 LINE L1 4611 5800 -500 183 80 0 0 chr1 80945570 80945595 -161718758 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 6737 161 32 15 chr1 80945595 80946103 -161718250 + L1MA6 LINE L1 5800 6298 -2 213 39 0 0 chr1 80947497 80947523 -161716830 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2487 57 3 0 chr1 80948338 80948636 -161715717 + AluY SINE Alu 1 299 -12 470 301 53 19 chr1 80949080 80949286 -161715067 - MIR SINE MIR -48 214 2 3054 162 14 6 chr1 80950156 80950706 -161713647 - L1PA16 LINE L1 -1 6165 5611 2490 194 2 39 chr1 80950706 80951278 -161713075 + L1 LINE L1 3429 3979 -2167 2650 104 0 0 chr1 80951900 80952254 -161712099 + THE1A LTR MaLR 2 355 0 11914 94 2 1 chr1 80952254 80953832 -161710521 + THE1A-int LTR MaLR 1 1580 0 2528 100 17 0 chr1 80953832 80954181 -161710172 + THE1A LTR MaLR 1 355 0 592 268 113 29 chr1 80954567 80954875 -161709478 - MIR SINE MIR 0 262 2 21 0 0 0 chr1 80955284 80955305 -161709048 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr1 80956368 80956402 -161707951 + AT_rich Low_complexity Low_complexity 1 34 0 509 306 105 18 chr1 80956781 80957000 -161707353 + L3 LINE CR1 1338 1575 -2 15288 54 0 1 chr1 80958256 80960974 -161703379 + L1PA5 LINE L1 3424 6151 -3 2030 137 3 3 chr1 80961641 80961940 -161702413 + AluSc SINE Alu 3 301 -8 21 36 0 0 chr1 80961944 80961972 -161702381 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 80962128 80962149 -161702204 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1 80962836 80962863 -161701490 + AT_rich Low_complexity Low_complexity 1 27 0 193 333 115 0 chr1 80963422 80963509 -161700844 - L2 LINE L2 -8 3264 3168 197 306 0 0 chr1 80964294 80964343 -161700010 + L2 LINE L2 3263 3311 -2 824 220 65 0 chr1 80964449 80964635 -161699718 - MIR SINE MIR 0 262 65 224 303 76 76 chr1 80964666 80964785 -161699568 + L2 LINE L2 3154 3272 0 619 294 8 77 chr1 80964971 80965219 -161699134 + L2 LINE L2 2843 3073 -240 22 56 0 0 chr1 80965295 80965331 -161699022 + AT_rich Low_complexity Low_complexity 1 36 0 952 204 23 54 chr1 80965787 80966008 -161698345 - MER20 DNA MER1_type 0 219 6 2662 184 30 13 chr1 80966150 80966995 -161697358 + L1MB2 LINE L1 4905 5762 -421 906 191 25 10 chr1 80967011 80967210 -161697143 + L1MB2 LINE L1 5966 6167 -4 900 188 80 40 chr1 80967599 80967823 -161696530 + MIR SINE MIR 2 234 -28 9234 118 2 1 chr1 80969713 80971909 -161692444 - L1PA8 LINE L1 -7 6165 3970 3863 259 65 31 chr1 80972026 80972511 -161691842 - L1M4c LINE L1 -4117 1855 1388 1776 110 96 15 chr1 80972511 80972783 -161691570 - AluSx SINE Alu -18 294 1 3863 259 65 31 chr1 80972783 80974594 -161689759 - L1M4c LINE L1 -4584 1388 39 536 194 24 109 chr1 80974602 80974849 -161689504 - L1M4 LINE L1 -1757 4389 4164 2664 125 28 16 chr1 80974849 80975272 -161689081 - MSTA LTR MaLR 0 428 1 3587 136 0 4 chr1 80975272 80975818 -161688535 - MSTA-int LTR MaLR 0 1651 1108 2521 97 20 9 chr1 80975818 80976210 -161688143 + MLT2A1 LTR ERVL 1 453 0 19301 70 13 0 chr1 80976210 80978654 -161685699 + HERVL-A1 LTR ERVL 1 2476 -3178 489 81 73 0 chr1 80978661 80978784 -161685569 + (TA)n Simple_repeat Simple_repeat 2 133 0 1333 209 258 22 chr1 80978804 80979425 -161684928 - L1MCa LINE L1 -4272 2154 1388 956 272 30 13 chr1 80980527 80980828 -161683525 + L1ME3A LINE L1 5855 6160 -10 1113 28 64 0 chr1 80980852 80980993 -161683360 - L1PA10 LINE L1 0 6168 6019 1432 254 74 41 chr1 80981143 80981675 -161682678 + MLT1F1 LTR MaLR 10 560 -7 495 272 68 50 chr1 80981724 80981820 -161682533 + L1MDa LINE L1 1308 1401 -5139 2895 3 0 0 chr1 80981820 80982131 -161682222 + AluYa5 SINE Alu 1 311 0 495 272 68 50 chr1 80982131 80982561 -161681792 + L1MDa LINE L1 1401 1866 -4674 1233 189 19 0 chr1 80984463 80984669 -161679684 + MER58A DNA MER1_type 6 215 -9 2848 13 0 0 chr1 80984942 80985253 -161679100 + AluYa5 SINE Alu 1 311 0 233 281 31 16 chr1 80986049 80986113 -161678240 + L2 LINE L2 3229 3293 -20 11006 80 24 3 chr1 80986143 80988403 -161675950 + L1PA7 LINE L1 3865 6154 0 634 346 64 29 chr1 80988621 80989171 -161675182 - HERVL LTR ERVL -1075 4410 3862 493 382 52 6 chr1 80989217 80989547 -161674806 - HERVL LTR ERVL -1905 3749 3405 532 225 120 0 chr1 80989558 80989700 -161674653 + MER63 DNA MER1_type 3 787 -275 339 311 6 61 chr1 80989746 80989910 -161674443 - HERVL LTR ERVL -2273 3381 3227 1658 314 49 5 chr1 80989988 80990539 -161673814 - HERVL LTR ERVL -1905 3091 2517 253 268 0 61 chr1 80990627 80990698 -161673655 - HERVL LTR ERVL -3305 2349 2282 2016 195 49 13 chr1 80990698 80991149 -161673204 + MLT1C LTR MaLR 1 467 0 315 192 27 14 chr1 80991185 80991258 -161673095 - L1MCa LINE L1 -4359 2067 1994 623 410 41 36 chr1 80991292 80991510 -161672843 - HERVL LTR ERVL -2763 2233 2018 2882 87 54 7 chr1 80991510 80991934 -161672419 - MLT2A1 LTR ERVL 0 444 1 623 410 41 36 chr1 80991934 80992516 -161671837 - HERVL LTR ERVL -2978 2018 1366 1759 336 69 30 chr1 80992562 80993781 -161670572 - HERVL LTR ERVL -3728 1268 3 1020 251 95 37 chr1 80993784 80994215 -161670138 - LTR16A1 LTR ERVL -1 456 1 778 263 16 0 chr1 80995368 80995554 -161668799 + MER5A DNA MER1_type 1 189 0 2058 138 3 6 chr1 80995746 80996057 -161668296 + AluSq SINE Alu 1 310 -3 446 320 0 0 chr1 80996133 80996258 -161668095 + MIR SINE MIR 126 250 -12 447 216 59 10 chr1 80996531 80996633 -161667720 - Zaphod DNA AcHobo 0 4031 3925 1486 200 176 2 chr1 80996643 80997058 -161667295 + MLT1D LTR MaLR 4 503 -2 2284 225 73 57 chr1 80997065 80997254 -161667099 - Zaphod DNA AcHobo -144 3887 3703 2079 134 7 0 chr1 80997254 80997544 -161666809 - AluSx SINE Alu -20 292 1 2284 225 73 57 chr1 80997544 80998355 -161665998 - Zaphod DNA AcHobo -328 3703 2871 1004 279 64 18 chr1 80998351 80998681 -161665672 - Zaphod DNA AcHobo -3495 536 192 * 186 355 129 0 chr1 80998885 80998978 -161665375 - MIR3 SINE MIR -100 108 4 269 324 59 0 chr1 80999140 80999242 -161665111 + L2 LINE L2 3138 3245 -27 361 267 57 9 chr1 80999387 80999492 -161664861 - L3b LINE CR1 -118 1465 1356 698 284 110 3 chr1 81000128 81000456 -161663897 - L1ME LINE L1 -527 5635 5273 416 255 56 15 chr1 81000473 81000669 -161663684 - L1ME LINE L1 -918 5228 5025 229 302 39 16 chr1 81000672 81000801 -161663552 - L1ME LINE L1 -1230 4916 4785 958 313 106 18 chr1 81000837 81002080 -161662273 - L1ME LINE L1 -1430 4716 3364 306 164 0 0 chr1 81002087 81002142 -161662211 + (CA)n Simple_repeat Simple_repeat 2 56 0 334 262 77 65 chr1 81002891 81003059 -161661294 - MIR SINE MIR 0 262 93 697 168 8 16 chr1 81003242 81003367 -161660986 - FLAM_C SINE Alu -19 124 1 6508 112 53 3 chr1 81003771 81004830 -161659523 - L1P3 LINE L1 -2919 3542 2431 * 11115 127 14 20 chr1 81004829 81006639 -161657714 - L1P3 LINE L1 -4667 1784 6 941 250 148 31 chr1 81007431 81007987 -161656366 + L1MC5 LINE L1 7306 7926 -35 329 188 52 73 chr1 81009339 81009435 -161654918 - L2 LINE L2 0 3313 3220 2204 118 0 37 chr1 81009449 81009797 -161654556 + MER1B DNA MER1_type 3 337 0 322 281 118 13 chr1 81010027 81010180 -161654173 + MIR SINE MIR 82 250 -12 524 274 113 4 chr1 81011859 81012045 -161652308 + MIR SINE MIR 25 233 -29 274 291 14 78 chr1 81013278 81013419 -161650934 - MIR SINE MIR -56 206 75 334 207 182 41 chr1 81013449 81013570 -161650783 - L2 LINE L2 0 3313 3176 5425 25 2 0 chr1 81014335 81014974 -161649379 - L1P1 LINE L1 -1443 4703 4064 * 5738 19 4 3 chr1 81014970 81016088 -161648265 + L1P1 LINE L1 4698 5816 -339 185 274 20 0 chr1 81017125 81017176 -161647177 + L2 LINE L2 1366 1417 -1897 743 233 81 0 chr1 81017179 81017351 -161647002 + MER5A DNA MER1_type 4 189 0 3567 153 61 12 chr1 81017405 81017923 -161646430 + Tigger3b DNA MER2_type 1 679 -2349 2142 109 18 0 chr1 81017923 81018243 -161646110 - AluSp SINE Alu 0 325 1 3567 153 61 12 chr1 81018243 81018545 -161645808 + Tigger3b DNA MER2_type 679 965 -266 2531 249 40 20 chr1 81018545 81019424 -161644929 - L1M4 LINE L1 -3172 3210 2314 982 220 85 21 chr1 81019442 81019678 -161644675 - AluJo SINE Alu -3 309 59 362 254 168 54 chr1 81020017 81020202 -161644151 - MIR SINE MIR -3 259 54 21 36 0 0 chr1 81020973 81021001 -161643352 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 81021220 81021242 -161643111 + AT_rich Low_complexity Low_complexity 1 22 0 2004 115 35 3 chr1 81022539 81022826 -161641527 - AluSx SINE Alu -16 296 1 606 340 33 17 chr1 81023447 81023688 -161640665 - L2 LINE L2 -185 3128 2884 23 0 0 0 chr1 81023751 81023774 -161640579 + AT_rich Low_complexity Low_complexity 1 23 0 180 273 256 8 chr1 81023820 81023941 -161640412 - MIR SINE MIR -40 222 72 2311 145 3 0 chr1 81024261 81024626 -161639727 - MER47A DNA MER2_type 0 366 1 364 181 14 0 chr1 81025120 81025192 -161639161 + MER94 DNA DNA 1 73 -61 570 216 87 87 chr1 81025235 81025443 -161638910 + MER63A DNA MER1_type 3 210 0 218 330 57 19 chr1 81025626 81025732 -161638621 + L2 LINE L2 3160 3269 -3 272 301 79 10 chr1 81026915 81027118 -161637235 + L1ME4a LINE L1 5688 5904 -217 618 244 34 48 chr1 81027697 81027906 -161636447 + LTR52 LTR ERVL 16 221 -200 220 350 83 25 chr1 81028145 81028265 -161636088 - L2 LINE L2 -38 3234 3108 365 378 84 4 chr1 81028444 81028682 -161635671 - L2 LINE L2 -508 2806 2550 249 330 22 11 chr1 81028684 81028775 -161635578 - L2 LINE L2 -37 3276 3185 493 255 125 41 chr1 81028792 81029149 -161635204 + MLT1J LTR MaLR 28 450 -61 1099 312 68 11 chr1 81030171 81030254 -161634099 + LTR33 LTR ERVL 1 78 -443 2055 166 8 16 chr1 81030254 81030622 -161633731 + MLT1A1 LTR MaLR 1 365 0 1099 312 68 11 chr1 81030622 81031009 -161633344 + LTR33 LTR ERVL 78 498 -23 642 292 120 28 chr1 81031102 81031386 -161632967 + LTR16A LTR ERVL 139 448 -2 356 387 71 22 chr1 81031573 81031798 -161632555 + L1ME LINE L1 5414 5649 -2159 293 207 69 0 chr1 81032323 81032410 -161631943 + L1ME LINE L1 5731 5823 -298 225 0 0 0 chr1 81032513 81032538 -161631815 + (TG)n Simple_repeat Simple_repeat 2 26 0 400 328 64 12 chr1 81032761 81032932 -161631421 + MIR SINE MIR 13 192 -70 10671 36 0 0 chr1 81032952 81034235 -161630118 - L1PA5 LINE L1 -1459 4687 3405 7226 46 0 0 chr1 81034235 81035728 -161628625 + L1PA5 LINE L1 4686 6178 0 951 186 41 23 chr1 81035760 81035981 -161628372 + MER33 DNA MER1_type 1 225 -99 315 313 62 25 chr1 81036377 81036555 -161627798 + LTR33A LTR ERVL 16 190 -331 365 250 162 0 chr1 81036556 81036692 -161627661 + MIR SINE MIR 105 262 0 6900 68 9 18 chr1 81036729 81037978 -161626375 - L1PA8 LINE L1 -5 6167 4907 369 0 0 0 chr1 81037978 81038019 -161626334 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2246 96 0 0 chr1 81038022 81038302 -161626051 - AluY SINE Alu -31 280 1 6900 68 9 18 chr1 81038302 81038844 -161625509 - L1PA8 LINE L1 -1267 4905 4382 224 186 23 0 chr1 81039176 81039219 -161625134 + (TA)n Simple_repeat Simple_repeat 2 45 0 26 50 0 0 chr1 81039429 81039469 -161624884 + AT_rich Low_complexity Low_complexity 1 40 0 1979 132 7 10 chr1 81040366 81040662 -161623691 + AluSx SINE Alu 1 295 -17 558 327 24 6 chr1 81040884 81041049 -161623304 - MIR3 SINE MIR -9 199 32 180 0 0 0 chr1 81042235 81042255 -161622098 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1773 126 41 4 chr1 81042257 81042528 -161621825 - AluSx SINE Alu -31 281 1 242 363 26 0 chr1 81043548 81043661 -161620692 - MIR SINE MIR -5 257 142 331 306 45 0 chr1 81043668 81043779 -161620574 + L2 LINE L2 3195 3310 -3 184 257 162 73 chr1 81043793 81043835 -161620518 - MIR SINE MIR -109 153 116 2045 141 0 6 chr1 81043835 81044148 -161620205 + AluSp SINE Alu 3 313 0 184 257 162 73 chr1 81044148 81044241 -161620112 - MIR SINE MIR -146 116 6 827 272 107 51 chr1 81044586 81045125 -161619228 + L2 LINE L2 2731 3313 0 315 344 41 78 chr1 81045265 81045559 -161618794 + L2 LINE L2 2943 3225 -47 26 0 0 0 chr1 81045782 81045808 -161618545 + AT_rich Low_complexity Low_complexity 1 26 0 1574 167 19 84 chr1 81046712 81047071 -161617282 - MLT1B LTR MaLR -52 338 3 1942 194 80 18 chr1 81047073 81047474 -161616879 - MLT1B-int LTR MaLR 0 1371 946 352 296 0 0 chr1 81047573 81047661 -161616692 - MLT1B-int LTR MaLR -962 773 686 3434 206 11 4 chr1 81047740 81048489 -161615864 - MLT1C-int LTR MaLR -489 882 10 770 181 0 14 chr1 81048489 81048627 -161615726 - MLT1C LTR MaLR -30 437 302 496 282 95 17 chr1 81048675 81048916 -161615437 - MIR SINE MIR -1 261 2 22 56 0 0 chr1 81049091 81049127 -161615226 + AT_rich Low_complexity Low_complexity 1 36 0 2285 104 0 0 chr1 81051038 81051337 -161613016 + AluSq SINE Alu 3 301 -12 29 0 0 0 chr1 81051337 81051366 -161612987 + AT_rich Low_complexity Low_complexity 1 29 0 599 236 58 68 chr1 81051997 81052188 -161612165 + MER5A DNA MER1_type 1 189 0 1844 145 175 14 chr1 81052438 81052803 -161611550 - MSTA LTR MaLR -4 424 1 8394 141 6 18 chr1 81052803 81054424 -161609929 - MSTA-int LTR MaLR 0 1580 6 1752 156 178 8 chr1 81054429 81054795 -161609558 - MSTA LTR MaLR 0 428 1 238 298 43 0 chr1 81054803 81054897 -161609456 + MER117 DNA MER1_type 74 171 -26 1956 162 7 0 chr1 81055251 81055553 -161608800 + AluSx SINE Alu 1 304 -8 33 66 0 0 chr1 81056027 81056088 -161608265 + AT_rich Low_complexity Low_complexity 1 61 0 195 377 110 0 chr1 81058711 81058857 -161605496 - MIR SINE MIR -64 198 37 46 0 0 0 chr1 81058915 81058961 -161605392 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr1 81058990 81059032 -161605321 + AT_rich Low_complexity Low_complexity 1 42 0 2841 275 129 46 chr1 81059126 81059284 -161605069 - L2 LINE L2 0 3313 3170 524 15 15 0 chr1 81059284 81059349 -161605004 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 2841 275 129 46 chr1 81059349 81060905 -161603448 - L2 LINE L2 -143 3170 1460 231 36 0 0 chr1 81060916 81060944 -161603409 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 238 321 32 10 chr1 81061346 81061449 -161602904 + MIR3 SINE MIR 57 163 -45 1893 140 4 0 chr1 81061820 81062092 -161602261 - AluSx SINE Alu -39 273 1 781 227 7 0 chr1 81062114 81062268 -161602085 - AluJ SINE Alu -11 291 137 692 191 0 50 chr1 81062277 81062311 -161602042 - AluJ SINE Alu -178 134 100 2584 115 5 3 chr1 81062311 81062685 -161601668 - THE1C LTR MaLR 0 375 1 692 191 0 50 chr1 81062685 81062791 -161601562 - AluJ SINE Alu -212 100 1 285 277 59 84 chr1 81064280 81064399 -161599954 - MIR SINE MIR -3 205 86 258 32 0 0 chr1 81064399 81064430 -161599923 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 285 277 59 84 chr1 81064430 81064509 -161599844 - MIR SINE MIR -122 86 7 233 341 47 0 chr1 81065051 81065136 -161599217 - MIR SINE MIR -14 248 160 227 266 16 16 chr1 81066274 81066338 -161598015 - MIR SINE MIR -10 252 189 21 0 0 0 chr1 81066366 81066387 -161597966 + AT_rich Low_complexity Low_complexity 1 21 0 36 23 0 0 chr1 81066662 81066705 -161597648 + AT_rich Low_complexity Low_complexity 1 43 0 1884 223 15 63 chr1 81066962 81067230 -161597123 + L1ME1 LINE L1 5342 5573 -593 1918 157 0 0 chr1 81067230 81067529 -161596824 + AluSx SINE Alu 1 299 -13 1884 223 15 63 chr1 81067529 81067798 -161596555 + L1ME1 LINE L1 5573 5853 -313 22 0 0 0 chr1 81067830 81067852 -161596501 + AT_rich Low_complexity Low_complexity 1 22 0 251 248 68 77 chr1 81067903 81068020 -161596333 + L1MC4 LINE L1 7895 8010 -32 747 290 129 48 chr1 81069446 81069942 -161594411 - L2 LINE L2 -1 3312 2763 560 294 57 24 chr1 81070985 81071196 -161593157 + MIR SINE MIR 45 262 0 411 324 40 103 chr1 81071225 81071574 -161592779 + L2 LINE L2 2943 3269 -3 477 374 108 18 chr1 81072802 81073134 -161591219 + L3b LINE CR1 1213 1574 -9 264 252 15 107 chr1 81073660 81073791 -161590562 - MER74B LTR ERVL -74 548 430 326 381 60 57 chr1 81077239 81077575 -161586778 + L2 LINE L2 2936 3272 0 211 216 0 0 chr1 81077926 81077977 -161586376 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 947 255 88 29 chr1 81078582 81078966 -161585387 + MLT1I LTR MaLR 3 409 0 388 293 15 30 chr1 81079574 81079707 -161584646 + L2 LINE L2 3142 3272 0 380 281 81 97 chr1 81079755 81079940 -161584413 - MIR3 SINE MIR -21 187 6 194 150 25 0 chr1 81080161 81080201 -161584152 + GA-rich Low_complexity Low_complexity 3 43 0 532 206 11 0 chr1 81080762 81080854 -161583499 - MER5A DNA MER1_type -84 105 13 240 311 152 15 chr1 81081737 81081869 -161582484 - MIR SINE MIR -60 202 53 846 208 12 6 chr1 81082240 81082413 -161581940 + L1PA16 LINE L1 5980 6153 -13 606 274 85 0 chr1 81083746 81083910 -161580443 + LTR33 LTR ERVL 5 182 -339 693 270 39 17 chr1 81083931 81084161 -161580192 + LTR33 LTR ERVL 287 521 0 297 215 31 0 chr1 81084213 81084278 -161580075 + L2 LINE L2 3206 3272 0 242 298 50 41 chr1 81086459 81086580 -161577773 - L2 LINE L2 -10 3303 3182 254 295 80 81 chr1 81086787 81087201 -161577152 + L2 LINE L2 2644 3059 -213 665 260 96 14 chr1 81087544 81087752 -161576601 - MIR SINE MIR -28 234 10 849 173 98 42 chr1 81088824 81088997 -161575356 - AluJb SINE Alu 0 312 123 291 54 0 0 chr1 81088997 81089034 -161575319 + (TG)n Simple_repeat Simple_repeat 1 37 0 849 173 98 42 chr1 81089034 81089074 -161575279 - AluJb SINE Alu -189 123 87 203 308 154 0 chr1 81089422 81089500 -161574853 - MIR SINE MIR -58 150 61 423 334 35 83 chr1 81089700 81090014 -161574339 - L2 LINE L2 0 3272 2974 7485 209 95 8 chr1 81090248 81092243 -161572110 + L1 LINE L1 2890 5057 -1089 2519 92 5 5 chr1 81092258 81092628 -161571725 - L1PB1 LINE L1 0 6151 5782 29 0 0 0 chr1 81092636 81092665 -161571688 + AT_rich Low_complexity Low_complexity 1 29 0 3725 154 2 10 chr1 81092665 81093861 -161570492 - L1PB1 LINE L1 -351 5800 4613 5171 114 68 2 chr1 81093868 81094918 -161569435 + L1PA16 LINE L1 5053 6157 -9 498 318 66 14 chr1 81095059 81095270 -161569083 + MIR SINE MIR 28 249 -13 2511 127 3 0 chr1 81095820 81096181 -161568172 + THE1B LTR MaLR 1 362 -2 387 0 0 0 chr1 81096329 81096372 -161567981 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1074 113 0 0 chr1 81096733 81096884 -161567469 - AluSg/x SINE Alu -8 304 154 1434 256 111 16 chr1 81096987 81097815 -161566538 - L1ME LINE L1 -577 5589 4693 * 5271 92 21 46 chr1 81097814 81098665 -161565688 - L1PB2 LINE L1 0 6151 5322 385 285 114 25 chr1 81099696 81099854 -161564499 + MIR3 SINE MIR 33 204 -4 446 320 94 21 chr1 81100848 81101082 -161563271 - MIR SINE MIR 0 262 12 237 108 0 0 chr1 81101126 81101163 -161563190 + (TG)n Simple_repeat Simple_repeat 2 38 0 6194 192 19 7 chr1 81102555 81103839 -161560514 + L1 LINE L1 3663 4962 -1184 23 0 0 0 chr1 81504008 81504031 -161160322 + AT_rich Low_complexity Low_complexity 1 23 0 1976 123 25 0 chr1 81504440 81504607 -161159746 - AluSg SINE Alu -18 292 114 201 39 0 0 chr1 81504607 81504633 -161159720 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1976 123 25 0 chr1 81504633 81504750 -161159603 - AluSg SINE Alu -196 114 1 2851 161 77 15 chr1 81505113 81505340 -161159013 + MER7C DNA MER2_type 1 212 -2816 185 65 32 0 chr1 81505340 81505371 -161158982 + (CTCA)n Simple_repeat Simple_repeat 1 32 0 2851 161 77 15 chr1 81505371 81505691 -161158662 + MER7C DNA MER2_type 212 582 -20 791 247 45 12 chr1 81505701 81505948 -161158405 + L1MA9 LINE L1 5950 6204 -108 727 183 0 30 chr1 81506110 81506473 -161157880 + (CATTC)n Satellite Satellite 1 352 0 709 177 2 2 chr1 81506522 81507028 -161157325 + (CATTC)n Satellite Satellite 1 506 0 263 217 36 0 chr1 81507041 81507124 -161157229 + (CATTC)n Satellite Satellite 4 89 0 432 133 118 141 chr1 81507228 81507363 -161156990 - MER70B LTR ERVL -446 132 1 21 71 0 0 chr1 81508836 81508878 -161155475 + AT_rich Low_complexity Low_complexity 1 42 0 2145 116 0 0 chr1 81508931 81509225 -161155128 - AluSx SINE Alu -18 294 1 23 54 0 0 chr1 81509251 81509288 -161155065 + AT_rich Low_complexity Low_complexity 1 37 0 2082 114 10 0 chr1 81511413 81511712 -161152641 + AluY SINE Alu 1 302 -9 191 333 37 56 chr1 81511870 81511978 -161152375 - MIR SINE MIR -80 128 23 722 266 93 18 chr1 81512468 81512694 -161151659 + MIR SINE MIR 20 262 0 1002 180 98 42 chr1 81513148 81513491 -161150862 + MSTD LTR MaLR 1 396 0 207 0 0 0 chr1 81513669 81513692 -161150661 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 286 243 65 9 chr1 81514352 81514459 -161149894 + GA-rich Low_complexity Low_complexity 3 115 0 301 260 167 0 chr1 81514913 81515009 -161149344 + MLT1E LTR MaLR 48 159 -434 266 196 54 0 chr1 81515015 81515107 -161149246 + (TA)n Simple_repeat Simple_repeat 1 97 0 507 165 0 0 chr1 81515107 81515192 -161149161 + MLT1E1 LTR MaLR 568 652 -2 482 305 102 15 chr1 81515256 81515453 -161148900 + MIR SINE MIR 36 249 -13 186 43 0 0 chr1 81516328 81516351 -161148002 + (GTTTG)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr1 81517054 81517081 -161147272 + AT_rich Low_complexity Low_complexity 1 27 0 256 321 19 104 chr1 81517703 81517915 -161146438 + L2 LINE L2 2898 3091 -181 549 270 75 49 chr1 81518499 81518766 -161145587 + L2 LINE L2 918 1191 -2123 200 200 0 0 chr1 81518870 81518910 -161145443 - L2 LINE L2 -4 3309 3270 452 100 114 0 chr1 81518934 81519004 -161145349 - AluJ/FRAM SINE Alu -16 296 219 268 327 69 0 chr1 81519323 81519424 -161144929 + MIR SINE MIR 49 156 -106 244 333 9 0 chr1 81520986 81521094 -161143259 - MER102b DNA MER1_type -1 340 232 2330 94 0 0 chr1 81522238 81522537 -161141816 + AluY SINE Alu 1 299 -12 292 57 0 0 chr1 81522613 81522648 -161141705 - tRNA-Val-GTG tRNA tRNA -39 37 3 5906 43 1 0 chr1 81522648 81523368 -161140985 + L1PA4 LINE L1 5434 6154 -1 204 296 0 0 chr1 81523880 81523951 -161140402 + (TTA)n Simple_repeat Simple_repeat 1 71 0 9617 160 5 10 chr1 81524723 81526420 -161137933 - L1P LINE L1 -1884 4262 2574 6225 90 16 0 chr1 81526420 81527640 -161136713 + L1PA10 LINE L1 4926 6163 -5 32 26 0 0 chr1 81527640 81527679 -161136674 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr1 81528133 81528174 -161136179 + AT_rich Low_complexity Low_complexity 1 41 0 981 184 0 0 chr1 81529862 81530025 -161134328 - FRAM SINE Alu -10 166 4 526 292 65 0 chr1 81530769 81530923 -161133430 + MIR SINE MIR 29 192 -70 689 354 40 18 chr1 81530924 81531368 -161132985 + L1M4 LINE L1 1216 1669 -5827 1896 281 56 56 chr1 81531807 81532955 -161131398 + L1M4 LINE L1 2049 3169 -4396 1348 233 11 3 chr1 81532955 81533242 -161131111 + AluJo SINE Alu 3 291 -11 1896 281 56 56 chr1 81533242 81533604 -161130749 + L1M4 LINE L1 3169 3530 -4035 509 267 82 45 chr1 81533606 81533962 -161130391 + L1M4 LINE L1 5892 6260 -1305 217 306 0 0 chr1 81535827 81535889 -161128464 - MIR3 SINE MIR -9 199 138 29 28 0 0 chr1 81536560 81536596 -161127757 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 81536915 81536947 -161127406 + AT_rich Low_complexity Low_complexity 1 32 0 270 383 78 0 chr1 81537474 81537615 -161126738 + MER5A DNA MER1_type 16 167 -22 415 160 13 13 chr1 81537956 81538031 -161126322 - HSMAR2 DNA Mariner -331 971 897 237 284 9 37 chr1 81538053 81538162 -161126191 - LTR33A LTR ERVL -415 108 3 258 286 80 40 chr1 81538369 81538544 -161125809 + MIR SINE MIR 77 258 -4 282 237 41 10 chr1 81538652 81538749 -161125604 - HsTC2 DNA Tc2 0 1898 1799 1867 258 111 12 chr1 81538765 81539416 -161124937 - HsTC2 DNA Tc2 -1182 716 2 21 0 0 0 chr1 81539643 81539664 -161124689 + AT_rich Low_complexity Low_complexity 1 21 0 213 274 144 71 chr1 81540918 81541258 -161123095 - L2 LINE L2 -62 3251 2887 1003 272 91 54 chr1 81541457 81542048 -161122305 + MLT1G LTR MaLR 15 590 0 21 57 0 0 chr1 81542259 81542294 -161122059 + AT_rich Low_complexity Low_complexity 1 35 0 252 100 0 0 chr1 81542395 81542435 -161121918 + (CA)n Simple_repeat Simple_repeat 1 40 0 311 250 4 0 chr1 81542497 81542583 -161121770 + MLT1H LTR MaLR 1 130 -419 322 223 0 47 chr1 81542621 81542769 -161121584 + G-rich Low_complexity Low_complexity 5 145 0 2126 136 0 0 chr1 81542859 81543169 -161121184 + AluSx SINE Alu 1 310 -2 247 295 90 8 chr1 81543489 81543611 -161120742 - HsTC2 DNA Tc2 -1013 885 754 2205 112 3 0 chr1 81544077 81544380 -161119973 - AluSx SINE Alu -8 304 1 377 265 125 15 chr1 81544780 81544916 -161119437 - MLT1J1 LTR MaLR -275 171 21 870 73 81 0 chr1 81545128 81545252 -161119101 - MER85 DNA T2_type -5 134 1 226 269 139 19 chr1 81546501 81546609 -161117744 - MIR SINE MIR -72 190 70 545 266 65 24 chr1 81547169 81547338 -161117015 - MIR SINE MIR -29 233 58 21 0 0 0 chr1 81549537 81549558 -161114795 + AT_rich Low_complexity Low_complexity 1 21 0 1238 270 126 16 chr1 81550202 81550687 -161113666 + MER34 LTR ERV1 4 541 -1 294 73 49 24 chr1 81550961 81551043 -161113310 + (TA)n Simple_repeat Simple_repeat 2 85 0 302 303 40 20 chr1 81551194 81551293 -161113060 + L1ME2 LINE L1 5654 5754 -367 26 30 0 0 chr1 81551303 81551336 -161113017 + AT_rich Low_complexity Low_complexity 1 33 0 2194 106 0 3 chr1 81551907 81552209 -161112144 - AluSx SINE Alu -10 302 2 1906 99 9 78 chr1 81552328 81552661 -161111692 + AluSg SINE Alu 1 310 0 1882 112 14 0 chr1 81552663 81552977 -161111376 + AluSp SINE Alu 1 318 0 720 146 77 0 chr1 81553869 81553999 -161110354 - AluSc SINE Alu -3 306 167 5474 257 30 5 chr1 81554411 81555663 -161108690 + L1M4b LINE L1 -567 716 -5568 1009 289 38 28 chr1 81555685 81556304 -161108049 + L1M4b LINE L1 1389 2149 -4414 339 297 42 53 chr1 81556279 81556636 -161107717 + L1MEc LINE L1 1894 2246 -4317 * 4515 173 60 33 chr1 81556802 81557368 -161106985 + L1MA9 LINE L1 5229 5836 -476 405 86 0 0 chr1 81557368 81557426 -161106927 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 4515 173 60 33 chr1 81557426 81557916 -161106437 + L1MA9 LINE L1 5836 6312 0 1666 239 21 11 chr1 81557914 81558349 -161106004 + L1ME2 LINE L1 5725 6163 -1 * 1490 186 11 45 chr1 81558394 81558770 -161105583 + L1MB8 LINE L1 5811 6173 -5 1737 98 113 7 chr1 81558969 81559244 -161105109 - MLT2A1 LTR ERVL -52 392 89 2256 112 0 0 chr1 81559808 81560113 -161104240 + AluSx SINE Alu 1 305 -7 1626 165 4 18 chr1 81560124 81560403 -161103950 + AluJb SINE Alu 22 296 -16 24 53 0 0 chr1 81560603 81560641 -161103712 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr1 81560728 81560761 -161103592 + AT_rich Low_complexity Low_complexity 1 33 0 920 168 23 23 chr1 81561339 81561512 -161102841 - FRAM SINE Alu -6 170 1 1831 156 70 3 chr1 81562248 81562620 -161101733 - L1MB3 LINE L1 0 6183 5787 1349 194 106 28 chr1 81562650 81562733 -161101620 - MER7A DNA MER2_type -2694 344 269 2040 166 0 20 chr1 81562733 81563077 -161101276 - MER1B DNA MER1_type 0 337 1 1349 194 106 28 chr1 81563077 81563313 -161101040 - MER7A DNA MER2_type -2769 269 2 3772 197 22 33 chr1 81563316 81564718 -161099635 - L1MB3 LINE L1 -414 5769 4377 452 297 67 18 chr1 81564781 81564946 -161099407 + MIR SINE MIR 72 244 -18 323 242 262 17 chr1 81565770 81565948 -161098405 - MIR SINE MIR -15 247 27 189 175 0 0 chr1 81565970 81566010 -161098343 + CT-rich Low_complexity Low_complexity 3 42 0 314 283 10 30 chr1 81567352 81567451 -161096902 + L2 LINE L2 3217 3313 0 445 306 91 10 chr1 81567706 81567905 -161096448 - MIR SINE MIR -43 219 5 1129 170 0 21 chr1 81568281 81568475 -161095878 + AluJo SINE Alu 82 271 -41 381 314 74 60 chr1 81568505 81568606 -161095747 + HAL1 LINE L1 22 120 -2387 1234 244 31 65 chr1 81568606 81569086 -161095267 + LTR16B LTR ERVL 1 464 0 381 314 74 60 chr1 81569086 81569401 -161094952 + HAL1 LINE L1 120 444 -2063 1260 176 84 72 chr1 81569488 81569847 -161094506 + MLT1A1 LTR MaLR 1 363 -2 345 172 0 0 chr1 81569889 81569953 -161094400 + GA-rich Low_complexity Low_complexity 1 64 0 688 148 39 19 chr1 81569974 81570129 -161094224 + MER53 DNA DNA 1 158 -31 812 217 0 12 chr1 81570129 81570290 -161094063 + FRAM SINE Alu 1 158 -18 729 213 133 16 chr1 81570341 81570590 -161093763 + HAL1 LINE L1 1391 1668 -839 1227 252 141 21 chr1 81570716 81571200 -161093153 + MLT1F LTR MaLR 1 542 0 24 0 0 0 chr1 81571257 81571281 -161093072 + AT_rich Low_complexity Low_complexity 1 24 0 211 272 120 33 chr1 81573433 81573525 -161090828 + MIR3 SINE MIR 70 169 -39 23 33 0 0 chr1 81573740 81573770 -161090583 + AT_rich Low_complexity Low_complexity 1 30 0 2400 70 3 3 chr1 81573782 81574082 -161090271 - AluY SINE Alu -11 300 1 261 139 0 0 chr1 81574138 81574181 -161090172 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1077 287 80 16 chr1 81574233 81574697 -161089656 - MLT1H LTR MaLR 0 549 3 937 126 5 99 chr1 81576091 81576282 -161088071 - MLT2B2 LTR ERVL 0 515 343 228 254 109 127 chr1 81576301 81576521 -161087832 + L2 LINE L2 2864 3079 -193 2041 162 112 16 chr1 81576544 81576927 -161087426 - MSTA LTR MaLR 0 428 9 274 252 233 0 chr1 81576987 81577090 -161087263 + L2 LINE L2 3182 3308 -5 21 0 0 0 chr1 81577109 81577130 -161087223 + AT_rich Low_complexity Low_complexity 1 21 0 32 81 0 0 chr1 81578256 81578330 -161086023 + AT_rich Low_complexity Low_complexity 1 74 0 2362 53 0 43 chr1 81578930 81579234 -161085119 + AluY SINE Alu 1 291 -20 2702 141 15 40 chr1 81579270 81579751 -161084602 + L1PA15 LINE L1 5682 6150 -15 50 51 0 0 chr1 81579898 81579976 -161084377 + AT_rich Low_complexity Low_complexity 1 78 0 252 291 64 64 chr1 81580102 81580212 -161084141 + MIR3 SINE MIR 47 156 -52 380 255 168 40 chr1 81580228 81580377 -161083976 - MER5A DNA MER1_type -12 177 10 2128 122 3 0 chr1 81581257 81581551 -161082802 + AluSx SINE Alu 1 295 -17 200 373 0 0 chr1 81581761 81581820 -161082533 - L2 LINE L2 -9 3263 3205 1493 204 7 7 chr1 81581970 81582255 -161082098 + AluJo SINE Alu 1 285 -27 2291 103 0 0 chr1 81582579 81582870 -161081483 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr1 81582870 81582896 -161081457 + AT_rich Low_complexity Low_complexity 1 26 0 309 237 0 26 chr1 81583406 81583482 -161080871 - L2 LINE L2 -9 3304 3231 28 0 0 0 chr1 81585632 81585660 -161078693 + AT_rich Low_complexity Low_complexity 1 28 0 1452 188 7 57 chr1 81585826 81586124 -161078229 - AluJo SINE Alu -19 283 1 22 0 0 0 chr1 81586842 81586864 -161077489 + AT_rich Low_complexity Low_complexity 1 22 0 472 335 40 0 chr1 81587064 81587237 -161077116 + LTR16C LTR ERVL 273 452 -39 418 302 58 7 chr1 81587341 81587480 -161076873 - MIR SINE MIR -66 196 51 248 208 0 14 chr1 81588343 81588415 -161075938 + GA-rich Low_complexity Low_complexity 1 71 0 1626 197 0 20 chr1 81588499 81588799 -161075554 + AluJo SINE Alu 6 299 -13 2126 187 62 44 chr1 81589643 81590188 -161074165 - MER34B LTR ERV1 0 565 11 22 35 0 0 chr1 81590239 81590268 -161074085 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 81591073 81591097 -161073256 + AT_rich Low_complexity Low_complexity 1 24 0 471 254 0 58 chr1 81591229 81591367 -161072986 + MER31-int LTR ERV1 4340 4469 -467 22 35 0 0 chr1 81591949 81591978 -161072375 + AT_rich Low_complexity Low_complexity 1 29 0 279 196 0 0 chr1 81592314 81592365 -161071988 + MER92C LTR ERV1 494 544 -10 22 0 0 0 chr1 81592696 81592718 -161071635 + AT_rich Low_complexity Low_complexity 1 22 0 2136 202 54 94 chr1 81592917 81593674 -161070679 + LTR8A LTR ERV1 1 727 0 281 98 0 20 chr1 81594259 81594310 -161070043 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr1 81596296 81596319 -161068034 + AT_rich Low_complexity Low_complexity 1 23 0 294 301 122 36 chr1 81596899 81597095 -161067258 + MIR SINE MIR 36 248 -14 423 242 0 70 chr1 81597260 81597388 -161066965 + MER91B DNA MER1_type 1 119 -71 431 228 65 0 chr1 81597411 81597503 -161066850 + MER91B DNA MER1_type 93 190 0 240 223 41 8 chr1 81597579 81597700 -161066653 + (TA)n Simple_repeat Simple_repeat 2 126 0 1100 226 85 9 chr1 81598246 81598623 -161065730 + L1MC2 LINE L1 2128 2479 -3947 4898 184 29 31 chr1 81598823 81599875 -161064478 + L1MC2 LINE L1 5563 6611 -13 2089 125 0 0 chr1 81599972 81600269 -161064084 - AluSq SINE Alu -16 297 1 25 31 0 0 chr1 81600281 81600313 -161064040 + AT_rich Low_complexity Low_complexity 1 32 0 1763 212 11 14 chr1 81600389 81600747 -161063606 + MLT1A1 LTR MaLR 1 357 -8 349 356 156 11 chr1 81602762 81602942 -161061411 + MIR SINE MIR 31 236 -26 25 31 0 0 chr1 81602960 81602992 -161061361 + AT_rich Low_complexity Low_complexity 1 32 0 1614 183 45 0 chr1 81603010 81603140 -161061213 + AluJo SINE Alu 3 126 -186 225 0 0 0 chr1 81603140 81603165 -161061188 + (TA)n Simple_repeat Simple_repeat 2 26 0 1614 183 45 0 chr1 81603165 81603302 -161061051 + AluJo SINE Alu 126 282 -30 1203 290 18 47 chr1 81603753 81604267 -161060086 + LTR53 LTR ERVL 21 519 0 2222 83 42 0 chr1 81604457 81604745 -161059608 - AluSq SINE Alu -13 300 1 727 236 17 0 chr1 81605810 81605988 -161058365 - LTR16C LTR ERVL 0 491 311 314 371 40 13 chr1 81605988 81606139 -161058214 + L3b LINE CR1 1424 1578 -5 333 307 11 11 chr1 81606947 81607035 -161057318 - MIR3 SINE MIR -13 195 108 1344 196 55 10 chr1 81607107 81607418 -161056935 - L1MA9 LINE L1 -38 6274 5950 3090 170 19 21 chr1 81607428 81608011 -161056342 - MER7C DNA MER2_type -20 582 1 1933 132 24 0 chr1 81608374 81608491 -161055862 + AluSg SINE Alu 1 114 -196 201 39 0 0 chr1 81608491 81608517 -161055836 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1933 132 24 0 chr1 81608517 81608686 -161055667 + AluSg SINE Alu 114 294 -16 235 404 66 20 chr1 81608986 81609137 -161055216 + L2 LINE L2 3115 3272 0 21 36 0 0 chr1 81609391 81609419 -161054934 + AT_rich Low_complexity Low_complexity 1 28 0 284 303 68 37 chr1 81609445 81609607 -161054746 - L2 LINE L2 -8 3305 3139 25 51 0 0 chr1 81610724 81610763 -161053590 + AT_rich Low_complexity Low_complexity 1 39 0 239 375 98 29 chr1 81611825 81612070 -161052283 + L2 LINE L2 2716 2977 -337 628 338 159 19 chr1 81612286 81612969 -161051384 - L2 LINE L2 -828 2486 1681 300 53 0 0 chr1 81612969 81613007 -161051346 + (TG)n Simple_repeat Simple_repeat 2 39 0 628 338 159 19 chr1 81613007 81613096 -161051257 - L2 LINE L2 -1633 1681 1606 591 373 65 30 chr1 81613285 81613915 -161050438 - L2 LINE L2 -2099 1215 564 2186 161 94 60 chr1 81614136 81614701 -161049652 - LTR60 LTR ERV1 -2 584 1 355 345 69 0 chr1 81615856 81615972 -161048381 - L2 LINE L2 0 3272 3149 1227 264 39 12 chr1 81617365 81617771 -161046582 + LTR52 LTR ERVL 1 417 -4 238 299 35 58 chr1 81618277 81618364 -161045989 + MIR3 SINE MIR 1 85 -123 6917 137 14 6 chr1 81618364 81619819 -161044534 + L1MA1 LINE L1 4835 6302 0 21 0 0 0 chr1 81619819 81619840 -161044513 + AT_rich Low_complexity Low_complexity 1 21 0 2231 172 42 21 chr1 81619931 81620356 -161043997 - Tigger2a DNA MER2_type 0 434 1 229 271 0 0 chr1 81620826 81620874 -161043479 + polypyrimidine Low_complexity Low_complexity 1 48 0 1284 89 0 0 chr1 81621247 81621427 -161042926 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2270 108 0 16 chr1 81621429 81621745 -161042608 - AluSx SINE Alu -1 311 1 625 324 107 19 chr1 81622045 81622363 -161041990 + MLT1K LTR MaLR 233 578 -10 186 324 0 29 chr1 81622367 81622435 -161041918 + L2 LINE L2 3121 3186 -86 23 54 0 0 chr1 81622738 81622775 -161041578 + AT_rich Low_complexity Low_complexity 1 37 0 28 0 0 0 chr1 81623594 81623622 -161040731 + AT_rich Low_complexity Low_complexity 1 28 0 364 343 61 40 chr1 81624152 81624350 -161040003 - MIR SINE MIR -35 227 26 28 79 0 0 chr1 81624532 81624595 -161039758 + AT_rich Low_complexity Low_complexity 1 63 0 2044 164 5 36 chr1 81626226 81626611 -161037742 - THE1C LTR MaLR 0 375 3 9795 112 39 37 chr1 81626613 81628191 -161036162 - THE1C-int LTR MaLR 0 1580 1 1979 172 33 11 chr1 81628191 81628558 -161035795 - THE1C LTR MaLR 0 375 1 1587 181 3 47 chr1 81629051 81629349 -161035004 + AluJo SINE Alu 1 285 -27 28 48 0 0 chr1 81630941 81630983 -161033370 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 81632332 81632361 -161031992 + AT_rich Low_complexity Low_complexity 1 29 0 211 326 164 48 chr1 81635218 81635696 -161028657 + L2 LINE L2 2516 3039 -233 1300 303 40 22 chr1 81636123 81636840 -161027513 - L1MEc LINE L1 -1419 4796 4067 283 277 195 21 chr1 81636920 81637552 -161026801 - L1MEc LINE L1 -2958 3257 2516 532 323 58 31 chr1 81637616 81638188 -161026165 - L1MEc LINE L1 -3933 2463 1877 1312 194 18 103 chr1 81638279 81638677 -161025676 + MLT1A2 LTR MaLR 11 374 0 194 330 75 43 chr1 81639051 81639145 -161025208 + L2 LINE L2 3180 3276 -37 21 36 0 0 chr1 81640665 81640693 -161023660 + AT_rich Low_complexity Low_complexity 1 28 0 248 293 17 0 chr1 81642059 81642117 -161022236 - L2 LINE L2 -4 3268 3210 233 187 132 66 chr1 81642825 81642916 -161021437 - MLT1I LTR MaLR -38 371 275 327 295 50 43 chr1 81643409 81643548 -161020805 + MER5B DNA MER1_type 28 167 -11 187 152 43 0 chr1 81643621 81643667 -161020686 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 282 270 81 35 chr1 81643668 81643842 -161020511 + L1ME4a LINE L1 5935 6116 -5 341 337 88 24 chr1 81647261 81647466 -161016887 + MIR SINE MIR 5 222 -40 2178 114 0 3 chr1 81648218 81648515 -161015838 - AluY SINE Alu -15 296 1 348 64 0 0 chr1 81648861 81648908 -161015445 + (CA)n Simple_repeat Simple_repeat 2 48 0 380 374 78 16 chr1 81649481 81649802 -161014551 - L2 LINE L2 -55 3258 2918 2199 141 13 16 chr1 81649891 81650267 -161014086 + THE1C LTR MaLR 1 375 0 1024 249 122 39 chr1 81650269 81650630 -161013723 + MSTD LTR MaLR 6 396 0 275 270 54 14 chr1 81650630 81650704 -161013649 - L2 LINE L2 -560 2754 2678 5131 285 96 19 chr1 81650779 81652626 -161011727 - L2 LINE L2 -1123 2191 203 334 292 15 36 chr1 81653473 81653610 -161010743 + MER94 DNA DNA 1 134 0 1158 111 0 0 chr1 81654888 81655134 -161009219 + (TA)n Simple_repeat Simple_repeat 1 246 0 616 262 42 12 chr1 81655256 81655424 -161008929 - MIR SINE MIR -11 251 79 229 130 22 0 chr1 81655425 81655471 -161008882 + (TTA)n Simple_repeat Simple_repeat 3 49 0 812 192 59 36 chr1 81655473 81655692 -161008661 + MLT1A2 LTR MaLR 151 374 0 181 369 36 9 chr1 81655908 81656019 -161008334 - L2 LINE L2 -508 2806 2693 341 323 8 0 chr1 81656640 81656767 -161007586 + L1ME1 LINE L1 6033 6160 -6 828 100 0 0 chr1 81657244 81657364 -161006989 + (TA)n Simple_repeat Simple_repeat 1 120 0 651 244 42 12 chr1 81657486 81657654 -161006699 - MIR SINE MIR -11 251 79 192 143 0 0 chr1 81657663 81657705 -161006648 + (TAA)n Simple_repeat Simple_repeat 3 44 0 327 323 8 0 chr1 81658842 81658969 -161005384 + L1ME1 LINE L1 6033 6160 -6 223 320 89 31 chr1 81659714 81659906 -161004447 + MIR SINE MIR 20 221 -41 714 268 34 6 chr1 81662533 81662712 -161001641 - MLT1I LTR MaLR -1 408 225 1354 175 105 18 chr1 81663749 81664034 -161000319 + AluJo SINE Alu 1 310 -2 271 224 112 47 chr1 81666530 81666637 -160997716 - MER103 DNA DNA -50 116 3 920 324 104 30 chr1 81667834 81668631 -160995722 + L2 LINE L2 2460 3313 0 400 304 152 18 chr1 81669112 81669283 -160995070 - MIR SINE MIR -61 201 8 244 404 62 33 chr1 81669363 81669603 -160994750 - L2 LINE L2 -20 3252 3006 2369 233 30 39 chr1 81670056 81670695 -160993658 + MER82 DNA MER2_type 1 633 -20 1945 214 28 17 chr1 81671006 81671468 -160992885 - MLT1C LTR MaLR 0 467 1 1132 60 11 22 chr1 81671539 81671639 -160992714 + (TTCC)n Simple_repeat Simple_repeat 1 278 0 1132 60 11 22 chr1 81671639 81671821 -160992532 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1833 144 11 7 chr1 81671842 81672120 -160992233 - AluSx SINE Alu -33 279 1 284 227 27 13 chr1 81672223 81672298 -160992055 + MIR SINE MIR 178 253 -9 198 171 0 0 chr1 81672525 81672566 -160991787 + (TATG)n Simple_repeat Simple_repeat 2 42 0 333 0 0 0 chr1 81673417 81673454 -160990899 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 81673569 81673592 -160990761 + AT_rich Low_complexity Low_complexity 1 23 0 2426 129 6 3 chr1 81674509 81674872 -160989481 + THE1B LTR MaLR 1 364 0 334 333 0 0 chr1 81676050 81676140 -160988213 + MER91A DNA MER1_type 1 90 -106 212 349 93 0 chr1 81676194 81676280 -160988073 + MER91A DNA MER1_type 100 193 -3 22 56 0 0 chr1 81676664 81676700 -160987653 + AT_rich Low_complexity Low_complexity 1 36 0 245 331 76 28 chr1 81677607 81677752 -160986601 + L2 LINE L2 3147 3298 -15 13772 138 29 8 chr1 81678426 81680704 -160983649 + Tigger1 DNA MER2_type 91 2417 -1 1404 100 5 0 chr1 81680955 81681155 -160983198 - L1PA13 LINE L1 -19 6144 5944 943 389 120 19 chr1 81681159 81682726 -160981627 - L2 LINE L2 -60 3253 1464 10197 116 30 5 chr1 81682739 81684336 -160980017 - L1PA8 LINE L1 -1304 4842 3206 6458 96 6 2 chr1 81684336 81685646 -160978707 + L1PA8 LINE L1 4844 6159 -13 606 345 115 5 chr1 81685658 81686040 -160978313 - L2 LINE L2 -1857 1457 1034 22 0 0 0 chr1 81686290 81686312 -160978041 + AT_rich Low_complexity Low_complexity 1 22 0 287 306 18 121 chr1 81686436 81686671 -160977682 + MIR SINE MIR 37 242 -20 3080 180 66 19 chr1 81686702 81687342 -160977011 - MER49 LTR ERV1 -10 913 244 303 302 187 29 chr1 81688141 81688280 -160976073 + MER5A DNA MER1_type 29 189 0 21 0 0 0 chr1 81688785 81688806 -160975547 + AT_rich Low_complexity Low_complexity 1 21 0 2273 109 0 0 chr1 81689749 81690052 -160974301 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr1 81692056 81692078 -160972275 + AT_rich Low_complexity Low_complexity 1 22 0 674 196 101 32 chr1 81692267 81692425 -160971928 + MIR SINE MIR 6 174 -88 813 167 15 0 chr1 81692425 81692557 -160971796 - MER70A LTR ERVL 0 472 339 2462 228 15 13 chr1 81692558 81693088 -160971265 - MER70-int LTR ERVL -1059 3964 3434 1756 159 70 8 chr1 81693666 81694038 -160970315 - L1MB3 LINE L1 -2 6181 5787 1349 194 106 28 chr1 81694068 81694151 -160970202 - MER7A DNA MER2_type -2694 344 269 2061 163 0 20 chr1 81694151 81694495 -160969858 - MER1B DNA MER1_type 0 337 1 1349 194 106 28 chr1 81694495 81694731 -160969622 - MER7A DNA MER2_type -2769 269 2 2571 176 8 63 chr1 81694734 81695454 -160968899 - L1MB3 LINE L1 -414 5769 5089 399 113 0 0 chr1 81745627 81745689 -160918664 + (CA)n Simple_repeat Simple_repeat 1 62 0 480 297 79 59 chr1 81745909 81746313 -160918040 - L1M4 LINE L1 -3365 2781 2370 376 288 89 69 chr1 81746350 81747008 -160917345 - MER77 LTR ERV1 -6 599 56 339 253 0 0 chr1 81747228 81747319 -160917034 + L1ME LINE L1 5407 5497 -667 278 169 77 0 chr1 81747384 81747449 -160916904 + L1ME3A LINE L1 6092 6161 -9 1380 219 126 14 chr1 81748029 81748449 -160915904 - MLT1C LTR MaLR 0 467 1 2079 95 52 5 chr1 81748545 81748933 -160915420 - LTR7 LTR ERV1 0 450 1 517 316 60 77 chr1 81749221 81749858 -160914495 + L2 LINE L2 2562 3252 -20 21 71 0 0 chr1 81749884 81749926 -160914427 + AT_rich Low_complexity Low_complexity 1 42 0 2262 88 7 3 chr1 81751173 81751481 -160912872 - AluY SINE Alu -2 309 1 188 312 130 0 chr1 81752184 81752261 -160912092 - L2 LINE L2 -7 3265 3179 25 0 0 0 chr1 81752300 81752325 -160912028 + AT_rich Low_complexity Low_complexity 1 25 0 235 302 79 16 chr1 81753350 81753476 -160910877 - MIR SINE MIR -3 259 126 21 57 0 0 chr1 81753912 81753947 -160910406 + AT_rich Low_complexity Low_complexity 1 35 0 1842 98 0 68 chr1 81754659 81754954 -160909399 + AluSq SINE Alu 1 275 -38 198 0 0 0 chr1 81754954 81754976 -160909377 + (GAA)n Simple_repeat Simple_repeat 2 23 0 2002 117 0 49 chr1 81755224 81755532 -160908821 - AluSc SINE Alu -11 298 6 442 318 99 14 chr1 81756011 81756222 -160908131 - MIR SINE MIR -14 248 20 307 377 53 0 chr1 81756979 81757093 -160907260 - L2 LINE L2 0 3272 3153 290 301 148 44 chr1 81757334 81757876 -160906477 - L2 LINE L2 -428 2886 2289 200 258 15 45 chr1 81758024 81758090 -160906263 + L2 LINE L2 3209 3272 0 321 273 81 10 chr1 81758290 81758389 -160905964 + L2 LINE L2 3208 3313 0 2155 99 0 0 chr1 81759394 81759697 -160904656 - L1PA13 LINE L1 -3 6160 5858 210 250 0 0 chr1 81760354 81760410 -160903943 + (CATA)n Simple_repeat Simple_repeat 4 59 0 567 176 19 9 chr1 81760411 81760519 -160903834 - MER6 DNA MER2_type -4 861 753 13685 129 41 56 chr1 81760520 81763093 -160901260 + L1P LINE L1 2 2535 -3611 348 89 0 0 chr1 81763099 81763186 -160901167 + Alu SINE Alu 239 325 0 4019 154 78 1 chr1 81763197 81763905 -160900448 - MER6 DNA MER2_type -102 763 2 306 0 0 0 chr1 81763908 81763942 -160900411 + (TG)n Simple_repeat Simple_repeat 1 34 0 242 250 66 0 chr1 81764072 81764148 -160900205 + MLT1J2 LTR MaLR 83 163 -287 781 191 42 12 chr1 81764636 81764804 -160899549 + MER69A DNA AcHobo 4 176 -1 22 56 0 0 chr1 81766129 81766165 -160898188 + AT_rich Low_complexity Low_complexity 1 36 0 393 269 50 28 chr1 81766617 81766758 -160897595 - L2 LINE L2 -911 2403 2260 2069 171 20 3 chr1 81766885 81767230 -160897123 - MLT1A1 LTR MaLR -5 360 10 355 311 53 29 chr1 81767256 81767462 -160896891 - L2 LINE L2 -1215 2099 1889 330 265 128 0 chr1 81768086 81768203 -160896150 - MIR SINE MIR 0 262 131 1036 79 0 0 chr1 81768250 81768376 -160895977 + AluSg SINE Alu 1 126 -184 39 74 0 0 chr1 81768581 81768662 -160895691 + AT_rich Low_complexity Low_complexity 1 81 0 330 265 128 0 chr1 81769012 81769129 -160895224 - MIR SINE MIR 0 262 131 1833 141 26 32 chr1 81769176 81769488 -160894865 + AluSg SINE Alu 1 310 0 463 385 53 6 chr1 81770299 81770657 -160893696 - ERVL LTR ERVL -337 5427 5053 234 228 76 22 chr1 81771493 81771585 -160892768 + L1ME4a LINE L1 5981 6077 -44 2171 137 14 6 chr1 81771862 81772219 -160892134 + MER46B DNA MER2_type 2 236 0 211 204 0 20 chr1 81772319 81772368 -160891985 + (TG)n Simple_repeat Simple_repeat 1 48 0 1970 187 21 10 chr1 81774385 81774770 -160889583 + MLT1B LTR MaLR 1 389 -1 423 313 98 0 chr1 81775389 81775552 -160888801 + MIR SINE MIR 67 245 -17 192 269 110 28 chr1 81775555 81775700 -160888653 - L2 LINE L2 -880 2434 2278 461 345 107 5 chr1 81775713 81775919 -160888434 + MIR SINE MIR 15 241 -21 7528 43 19 1 chr1 81776141 81777080 -160887273 - L1PA5 LINE L1 -1824 4322 3367 8104 50 0 0 chr1 81777081 81778864 -160885489 + L1PA5 LINE L1 4355 6147 -7 778 264 41 26 chr1 81778867 81779211 -160885142 + L1M4 LINE L1 4281 4629 -1517 34 79 0 0 chr1 81779232 81779308 -160885045 + AT_rich Low_complexity Low_complexity 1 76 0 386 159 0 0 chr1 81779308 81779377 -160884976 + L1M4 LINE L1 4645 4713 -1433 916 170 32 37 chr1 81779382 81779600 -160884753 - MLT1E3 LTR MaLR -8 616 400 595 220 229 42 chr1 81779623 81779917 -160884436 - MLT1E3 LTR MaLR -330 296 1 25 31 0 0 chr1 81780031 81780063 -160884290 + AT_rich Low_complexity Low_complexity 1 32 0 211 360 73 36 chr1 81780562 81780918 -160883435 - L2 LINE L2 -2395 919 551 318 26 0 0 chr1 81781721 81781760 -160882593 + (CA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr1 81781947 81781969 -160882384 + AT_rich Low_complexity Low_complexity 1 22 0 511 206 108 139 chr1 81782146 81782534 -160881819 + LTR37A LTR ERV1 46 421 -5 214 343 121 10 chr1 81783051 81783150 -160881203 + L2 LINE L2 3096 3205 -67 383 217 139 17 chr1 81783231 81783346 -160881007 + MER39 LTR ERV1 11 139 -568 1543 176 36 29 chr1 81783359 81783666 -160880687 + MER39 LTR ERV1 357 665 -42 11082 166 27 34 chr1 81784322 81784450 -160879903 + L1P3 LINE L1 2 129 -6332 1839 135 29 0 chr1 81784450 81784771 -160879582 + AluSq SINE Alu 1 329 0 11082 166 27 34 chr1 81784771 81787981 -160876372 + L1P3 LINE L1 129 3398 -3063 900 291 109 9 chr1 81789371 81789721 -160874632 - MER57B LTR ERV1 -38 396 12 248 316 92 0 chr1 81789989 81790087 -160874266 + MLT1J2 LTR MaLR 240 346 -104 1246 189 102 0 chr1 81791321 81791565 -160872788 + MSTB LTR MaLR 3 271 -155 16519 90 9 1 chr1 81791569 81794680 -160869673 + L1PA7 LINE L1 2997 6135 -19 1110 185 38 24 chr1 81794702 81794913 -160869440 + MLT1A1 LTR MaLR 144 357 -8 940 251 63 60 chr1 81794912 81795259 -160869094 + MLT1B LTR MaLR 43 390 0 * 247 240 0 0 chr1 81795634 81795684 -160868669 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 1082 343 106 17 chr1 81795906 81796776 -160867577 - L2 LINE L2 -23 3290 2339 2270 110 0 0 chr1 81797022 81797314 -160867039 - AluSg SINE Alu -14 296 5 1191 141 16 88 chr1 81798567 81798872 -160865481 - L1MB8 LINE L1 -14 6164 5882 457 264 9 0 chr1 81799455 81799561 -160864792 + MIR SINE MIR 85 191 -71 333 183 0 0 chr1 81800012 81800083 -160864270 - L1MB7 LINE L1 0 6184 6114 1521 230 71 36 chr1 81800083 81800643 -160863710 + L1MC1 LINE L1 4753 5332 -814 680 221 41 0 chr1 81800643 81800814 -160863539 + FRAM SINE Alu 1 177 0 4656 180 23 35 chr1 81800819 81801804 -160862549 + L1MC1 LINE L1 5341 6314 -19 374 231 8 0 chr1 81801836 81801953 -160862400 + (TA)n Simple_repeat Simple_repeat 2 119 0 23 0 0 0 chr1 81801961 81801984 -160862369 + AT_rich Low_complexity Low_complexity 1 23 0 267 197 66 20 chr1 81802001 81802153 -160862200 + (TA)n Simple_repeat Simple_repeat 1 159 0 327 269 0 32 chr1 81802225 81802318 -160862035 - L1MC4 LINE L1 -1339 6703 6614 1876 230 38 48 chr1 81802323 81802902 -160861451 - L1MB7 LINE L1 -57 6127 5555 * 3320 170 14 17 chr1 81802901 81802961 -160861392 + L1MA5 LINE L1 3906 3965 -2181 2017 117 0 3 chr1 81802961 81803286 -160861067 + AluY SINE Alu 3 326 0 3320 170 14 17 chr1 81803286 81803887 -160860466 + L1MA5 LINE L1 3965 4566 -1580 1874 143 51 20 chr1 81803891 81804241 -160860112 + THE1C LTR MaLR 15 375 0 5655 159 36 27 chr1 81804241 81805966 -160858387 + L1MA5 LINE L1 4561 6300 0 622 196 26 111 chr1 81805974 81806163 -160858190 - L1MB7 LINE L1 -616 5568 5396 1750 266 83 54 chr1 81806176 81807077 -160857276 - L1MB7 LINE L1 -877 5269 4343 370 228 52 15 chr1 81807103 81807239 -160857114 - L1MB7 LINE L1 -2726 3420 3280 1113 118 0 0 chr1 81807251 81807429 -160856924 + (TTC)n Simple_repeat Simple_repeat 1 178 0 240 143 0 0 chr1 81807431 81807473 -160856880 + (TCC)n Simple_repeat Simple_repeat 3 44 0 542 236 89 10 chr1 81807473 81807708 -160856645 - L1MB7 LINE L1 -3023 3123 2870 436 216 165 0 chr1 81807709 81807806 -160856547 + FLAM_A SINE Alu 1 113 -29 1898 219 14 6 chr1 81807823 81808184 -160856169 + L1PA15 LINE L1 21 384 -6403 * 2255 171 18 21 chr1 81808153 81808849 -160855504 + L1PA15 LINE L1 4915 5786 -1030 1388 237 3 0 chr1 81808849 81809144 -160855209 + AluJb SINE Alu 1 296 -16 2255 171 18 21 chr1 81809144 81809619 -160854734 + L1PA15 LINE L1 5786 6261 -555 2952 137 9 0 chr1 81809640 81810099 -160854254 + L1PA15 LINE L1 6352 6814 -2 380 77 0 28 chr1 81810155 81810247 -160854106 + (CAAAA)n Simple_repeat Simple_repeat 1 89 0 1924 247 44 17 chr1 81810287 81810996 -160853357 - L1MB7 LINE L1 -3291 2855 2128 30 27 0 0 chr1 81811019 81811056 -160853297 + AT_rich Low_complexity Low_complexity 1 37 0 1404 273 51 75 chr1 81811414 81812210 -160852143 - L1M4c LINE L1 -4443 2120 1194 393 302 68 36 chr1 81812212 81812434 -160851919 - L3 LINE CR1 -3 1574 1346 562 354 156 17 chr1 81812441 81813002 -160851351 - L3 LINE CR1 -407 1170 468 2131 127 3 0 chr1 81813002 81813309 -160851044 + AluSq SINE Alu 1 308 -5 562 354 156 17 chr1 81813309 81813530 -160850823 - L3 LINE CR1 -1109 468 279 265 365 9 0 chr1 81813683 81813790 -160850563 - MIR SINE MIR -17 245 138 303 228 22 43 chr1 81813821 81813913 -160850440 - MLT1J1 LTR MaLR 0 446 357 229 330 11 22 chr1 81814025 81814116 -160850237 - MLT1I LTR MaLR -249 160 71 237 260 26 13 chr1 81815518 81815595 -160848758 - MLT1J2 LTR MaLR -306 144 67 4691 136 12 12 chr1 81816980 81817728 -160846625 + L1PA15 LINE L1 5400 6147 -18 241 259 0 0 chr1 81817728 81817782 -160846571 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 24 32 0 0 chr1 81818060 81818091 -160846262 + AT_rich Low_complexity Low_complexity 1 31 0 259 211 22 0 chr1 81818109 81818199 -160846154 + (TA)n Simple_repeat Simple_repeat 1 92 0 705 214 48 7 chr1 81818283 81818428 -160845925 - FRAM SINE Alu -25 151 1 355 269 77 10 chr1 81818830 81818934 -160845419 + MER94 DNA DNA 19 129 -5 25 0 0 0 chr1 81819588 81819613 -160844740 + AT_rich Low_complexity Low_complexity 1 25 0 21 89 0 0 chr1 81819975 81820031 -160844322 + AT_rich Low_complexity Low_complexity 1 56 0 473 344 16 0 chr1 81820143 81820326 -160844027 + L2 LINE L2 1772 1957 -1357 1747 154 14 0 chr1 81820328 81820642 -160843711 + AluJb SINE Alu 1 318 0 30 45 0 0 chr1 81821115 81821159 -160843194 + AT_rich Low_complexity Low_complexity 1 44 0 684 212 233 0 chr1 81821369 81821605 -160842748 - L1ME3A LINE L1 -6 6164 5874 31 0 0 0 chr1 81821715 81821746 -160842607 + AT_rich Low_complexity Low_complexity 1 31 0 2223 120 0 0 chr1 81822382 81822690 -160841663 + AluSx SINE Alu 1 308 -4 566 264 96 86 chr1 81822835 81823221 -160841132 - MLT1J LTR MaLR -112 399 10 275 238 75 0 chr1 81823396 81823476 -160840877 - MIR SINE MIR -10 252 167 553 371 170 7 chr1 81824954 81825560 -160838793 + L3 LINE CR1 117 821 -756 24 0 0 0 chr1 81825629 81825653 -160838700 + AT_rich Low_complexity Low_complexity 1 24 0 224 381 157 0 chr1 81825692 81825826 -160838527 + L3 LINE CR1 974 1128 -449 863 347 82 45 chr1 81825991 81826821 -160837532 + L2 LINE L2 2434 3313 0 187 281 98 24 chr1 81827380 81827462 -160836891 + L3 LINE CR1 1353 1440 -137 188 329 27 14 chr1 81829150 81829223 -160835130 - L2 LINE L2 0 3272 3199 230 304 26 43 chr1 81832364 81832479 -160831874 - L2 LINE L2 -12 3301 3189 22 0 0 0 chr1 81832520 81832542 -160831811 + AT_rich Low_complexity Low_complexity 1 22 0 252 100 0 0 chr1 81834473 81834513 -160829840 + (T)n Simple_repeat Simple_repeat 1 40 0 1969 126 14 0 chr1 81834915 81835223 -160829130 + AluSg SINE Alu 1 310 0 21 0 0 0 chr1 81835527 81835548 -160828805 + AT_rich Low_complexity Low_complexity 1 21 0 3787 198 41 36 chr1 81835567 81836958 -160827395 + L1MB7 LINE L1 4787 6184 0 21 36 0 0 chr1 81837476 81837504 -160826849 + AT_rich Low_complexity Low_complexity 1 28 0 1404 190 23 57 chr1 81837704 81838004 -160826349 + AluJo SINE Alu 1 290 -22 385 289 31 31 chr1 81838613 81838741 -160825612 + L1MEd LINE L1 975 1102 -5017 28 0 0 0 chr1 81838859 81838887 -160825466 + AT_rich Low_complexity Low_complexity 1 28 0 972 278 70 52 chr1 81838965 81839465 -160824888 + MLT1J LTR MaLR 1 509 -2 322 300 186 0 chr1 81840668 81840808 -160823545 - MLT1J LTR MaLR 0 511 346 692 227 98 73 chr1 81840950 81841020 -160823333 + MLT1D LTR MaLR 3 70 -397 1004 238 120 28 chr1 81841020 81841377 -160822976 - MLT1B LTR MaLR 0 390 1 692 227 98 73 chr1 81841377 81841733 -160822620 + MLT1D LTR MaLR 70 435 -32 334 313 107 0 chr1 81841748 81841879 -160822474 - MLT1J LTR MaLR -366 145 1 905 295 54 54 chr1 81841993 81842440 -160821913 + MLT1J LTR MaLR 17 463 -48 1757 233 33 10 chr1 81842967 81843477 -160820876 - Charlie1b DNA MER1_type 0 523 2 4590 93 5 0 chr1 81843587 81844219 -160820134 - L1PA5 LINE L1 -4934 1212 578 32558 55 2 1 chr1 81844219 81849171 -160815182 + L1PA5 LINE L1 1197 6154 0 1850 220 16 0 chr1 81849392 81849779 -160814574 + L1M3 LINE L1 5311 5703 -465 203 291 36 0 chr1 81850415 81850470 -160813883 + L2 LINE L2 3216 3272 0 4513 165 97 13 chr1 81851167 81852081 -160812272 + L1MC1 LINE L1 5343 6333 0 1858 156 7 3 chr1 81852357 81852652 -160811701 - AluSx SINE Alu -16 296 1 184 104 21 62 chr1 81854627 81854723 -160809630 + (TAA)n Simple_repeat Simple_repeat 2 93 0 23 54 0 0 chr1 81854818 81854855 -160809498 + AT_rich Low_complexity Low_complexity 1 37 0 663 304 75 5 chr1 81855855 81856069 -160808284 + MIR SINE MIR 20 248 -14 26 50 0 0 chr1 81856241 81856281 -160808072 + AT_rich Low_complexity Low_complexity 1 40 0 484 175 32 24 chr1 81857108 81857234 -160807119 - Charlie5 DNA MER1_type -44 2568 2442 549 250 70 0 chr1 81857235 81857391 -160806962 + L1M4 LINE L1 3996 4162 -1984 254 294 55 9 chr1 81857383 81857492 -160806861 + L1M4 LINE L1 3687 3800 -2346 * 286 305 37 16 chr1 81857499 81857689 -160806664 + L1M4 LINE L1 3855 4048 -2098 21 0 0 0 chr1 81857901 81857922 -160806431 + AT_rich Low_complexity Low_complexity 1 21 0 208 263 10 71 chr1 81858297 81858396 -160805957 - L2 LINE L2 -75 3238 3146 238 235 95 117 chr1 81858466 81858645 -160805708 - L2 LINE L2 -340 2974 2686 6092 239 71 47 chr1 81858647 81860912 -160803441 + L1M4b LINE L1 13 2335 -4624 180 77 0 0 chr1 81861046 81861072 -160803281 + (TC)n Simple_repeat Simple_repeat 2 27 0 272 253 0 0 chr1 81861072 81861147 -160803206 + (TA)n Simple_repeat Simple_repeat 2 76 0 256 212 76 0 chr1 81861149 81861215 -160803138 + L1M4b LINE L1 2630 2700 -4438 654 281 66 77 chr1 81861231 81861570 -160802783 + L1MEc LINE L1 1738 2072 -4324 2170 86 4 0 chr1 81861570 81861850 -160802503 + AluY SINE Alu 17 297 -14 654 281 66 77 chr1 81861850 81861979 -160802374 + L1MEc LINE L1 2072 2201 -4195 23 33 0 0 chr1 81862075 81862105 -160802248 + AT_rich Low_complexity Low_complexity 1 30 0 1882 139 7 0 chr1 81864593 81864867 -160799486 + AluSx SINE Alu 11 286 -26 235 291 62 37 chr1 81864939 81865180 -160799173 + L1ME LINE L1 5611 5857 -264 289 297 41 14 chr1 81865393 81865538 -160798815 - L1MC4a LINE L1 -1868 5940 5792 557 261 68 25 chr1 81865683 81865737 -160798616 - L1MC4a LINE L1 -448 5673 5623 2198 150 67 59 chr1 81865737 81866197 -160798156 - MLT2C2 LTR ERVL 0 464 1 557 261 68 25 chr1 81866197 81866503 -160797850 - L1MC4a LINE L1 -498 5623 5293 617 325 119 31 chr1 81866666 81867206 -160797147 - L1MC4a LINE L1 -1130 5016 4376 2145 125 0 0 chr1 81867206 81867509 -160796844 - AluSc SINE Alu 0 309 7 617 325 119 31 chr1 81867509 81867801 -160796552 - L1MC4a LINE L1 -1770 4376 4111 30 27 0 0 chr1 81867804 81867841 -160796512 + AT_rich Low_complexity Low_complexity 1 37 0 7135 36 10 0 chr1 81868827 81869696 -160794657 - L1PA4 LINE L1 -3 6152 5275 4156 39 0 0 chr1 81869696 81870207 -160794146 + L1PA4 LINE L1 4769 5279 -867 242 65 0 0 chr1 81870284 81870315 -160794038 + L1MA3 LINE L1 5916 5946 -359 4915 122 8 7 chr1 81870395 81871167 -160793186 - L1MA3 LINE L1 0 7724 6952 386 98 0 0 chr1 81871173 81871234 -160793119 + L1 LINE L1 4733 4793 -1353 19032 180 40 7 chr1 81871244 81877952 -160786401 - L1MA3 LINE L1 -745 6820 1 18304 51 5 0 chr1 81877995 81881111 -160783242 + L1PA5 LINE L1 3013 6152 -2 448 290 48 19 chr1 81881362 81881569 -160782784 + L1M4b LINE L1 12 224 -6635 3955 266 45 27 chr1 81881648 81883648 -160780705 + L1M4b LINE L1 2470 4476 -2481 6455 57 1 0 chr1 81884522 81885343 -160779010 + L1PA7 LINE L1 5332 6153 -1 192 111 0 0 chr1 81885387 81885423 -160778930 + (A)n Simple_repeat Simple_repeat 1 36 0 656 164 98 0 chr1 81886143 81886265 -160778088 + AluJo SINE Alu 1 134 -178 325 299 0 37 chr1 81886270 81886377 -160777976 - L1MC4 LINE L1 -1326 6716 6614 304 333 0 0 chr1 81886297 81886387 -160777966 + L1MC4 LINE L1 6614 6703 -1339 * 393 117 0 0 chr1 81886498 81886558 -160777795 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 320 292 67 48 chr1 81886925 81887134 -160777219 + L1MEc LINE L1 1842 2054 -4342 937 286 70 26 chr1 81887231 81887963 -160776390 + L1MEc LINE L1 2116 2879 -3336 1119 204 28 49 chr1 81889202 81889222 -160775131 - L1M2 LINE L1 -503 5809 5790 225 0 0 0 chr1 81889222 81889247 -160775106 + (CA)n Simple_repeat Simple_repeat 2 26 0 1119 204 28 49 chr1 81889247 81889510 -160774843 - L1M2 LINE L1 -522 5790 5532 24 0 0 0 chr1 81890783 81890807 -160773546 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr1 81890930 81890978 -160773375 + AT_rich Low_complexity Low_complexity 1 48 0 23 78 0 0 chr1 81891679 81891730 -160772623 + AT_rich Low_complexity Low_complexity 1 51 0 180 125 0 0 chr1 81891790 81891822 -160772531 + (A)n Simple_repeat Simple_repeat 1 32 0 455 271 175 0 chr1 81891864 81892041 -160772312 - MER58C DNA MER1_type -3 212 5 189 0 0 0 chr1 81892080 81892101 -160772252 + (CA)n Simple_repeat Simple_repeat 2 22 0 29 0 0 0 chr1 81892176 81892205 -160772148 + AT_rich Low_complexity Low_complexity 1 29 0 337 331 24 8 chr1 81892624 81892751 -160771602 + LTR67 LTR ERVL 428 556 -1 23 86 0 0 chr1 81892928 81892986 -160771367 + AT_rich Low_complexity Low_complexity 1 58 0 296 218 64 26 chr1 81893027 81893105 -160771248 + MIR SINE MIR 118 198 -64 1661 185 44 24 chr1 81893142 81893483 -160770870 + MER7A DNA MER2_type 1 346 0 561 273 8 0 chr1 81893610 81893731 -160770622 + L2 LINE L2 3187 3308 -5 224 332 17 13 chr1 81893846 81893874 -160770479 + MIR SINE MIR 1 27 -181 189 0 0 0 chr1 81893874 81893895 -160770458 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 224 332 17 13 chr1 81893895 81893971 -160770382 + MIR SINE MIR 27 106 -102 21 36 0 0 chr1 81894133 81894161 -160770192 + AT_rich Low_complexity Low_complexity 1 28 0 1653 171 4 4 chr1 81894196 81894477 -160769876 + AluJo SINE Alu 11 291 -21 24 0 0 0 chr1 81894825 81894849 -160769504 + AT_rich Low_complexity Low_complexity 1 24 0 2607 223 29 13 chr1 81894892 81895775 -160768578 - L1M2 LINE L1 -4455 2394 1261 331 214 239 0 chr1 81895783 81895880 -160768473 - MER21B LTR ERV1 -381 550 335 * 350 268 167 45 chr1 81895876 81896074 -160768279 - MLT1E3 LTR MaLR -402 222 1 1108 302 84 26 chr1 81896208 81897040 -160767313 - L1M4 LINE L1 -2258 3888 3009 476 270 60 118 chr1 81897083 81897568 -160766785 + MLT1J LTR MaLR 1 457 -54 22 70 0 0 chr1 81897620 81897663 -160766690 + AT_rich Low_complexity Low_complexity 1 43 0 263 327 144 14 chr1 81897930 81898138 -160766215 - L3 LINE CR1 -190 1387 1153 25 0 0 0 chr1 81898164 81898189 -160766164 + AT_rich Low_complexity Low_complexity 1 25 0 1972 113 0 0 chr1 81898248 81898513 -160765840 - AluSc SINE Alu -1 308 44 251 343 142 15 chr1 81898887 81899091 -160765262 - L3 LINE CR1 -195 1382 1153 25 0 0 0 chr1 81899117 81899142 -160765211 + AT_rich Low_complexity Low_complexity 1 25 0 2101 83 0 0 chr1 81899202 81899466 -160764887 - AluSc SINE Alu -2 307 44 24 0 0 0 chr1 81900263 81900287 -160764066 + AT_rich Low_complexity Low_complexity 1 24 0 954 296 110 4 chr1 81900554 81901010 -160763343 + L1MC4a LINE L1 6292 6795 -1013 199 339 81 8 chr1 81901155 81901279 -160763074 + MIR SINE MIR 129 261 -1 371 389 56 0 chr1 81901748 81901910 -160762443 - L2 LINE L2 0 3272 3102 271 305 147 0 chr1 81901976 81902071 -160762282 - L2 LINE L2 -554 2760 2652 2506 64 0 0 chr1 81902153 81902464 -160761889 + AluY SINE Alu 1 311 0 298 241 107 74 chr1 81902481 81902645 -160761708 - MIR SINE MIR -27 235 66 23 0 0 0 chr1 81904069 81904092 -160760261 + AT_rich Low_complexity Low_complexity 1 23 0 2313 151 57 7 chr1 81904197 81904601 -160759752 + MSTB LTR MaLR 1 424 -2 189 200 186 14 chr1 81905816 81905886 -160758467 + L2 LINE L2 1969 2050 -1264 442 351 124 27 chr1 81905976 81906605 -160757748 + L2 LINE L2 2156 2845 -469 2493 202 29 57 chr1 81906820 81907473 -160756880 + MER92B LTR ERV1 2 636 0 299 355 179 28 chr1 81907609 81908519 -160755834 + L2 LINE L2 1930 2977 -337 1997 183 14 0 chr1 81909166 81909526 -160754827 - MLT1A1 LTR MaLR 0 365 1 189 0 0 0 chr1 81910119 81910140 -160754213 + (TAA)n Simple_repeat Simple_repeat 2 22 0 608 264 52 0 chr1 81910163 81910318 -160754035 + MIR SINE MIR 26 188 -74 2086 135 14 0 chr1 81910975 81911323 -160753030 + L1MA5A LINE L1 5935 6287 -10 2783 240 48 22 chr1 81911733 81912299 -160752054 - L1MD1 LINE L1 -369 6267 5717 234 62 0 0 chr1 81912299 81912331 -160752022 + (TG)n Simple_repeat Simple_repeat 2 33 0 2783 240 48 22 chr1 81912331 81912389 -160751964 - L1MD1 LINE L1 -919 5717 5662 2072 146 48 16 chr1 81912389 81912767 -160751586 + MLT1B LTR MaLR 1 390 0 2783 240 48 22 chr1 81912767 81914974 -160749379 - L1MD1 LINE L1 -974 5662 3290 4696 69 5 14 chr1 81914974 81915626 -160748727 + L1PB1 LINE L1 5323 5968 -183 811 75 0 0 chr1 81915618 81915725 -160748628 + L1PA10 LINE L1 6058 6164 -4 * 1274 107 0 20 chr1 81915767 81915964 -160748389 + L1PB1 LINE L1 5959 6151 0 1753 245 48 43 chr1 81916029 81916911 -160747442 - L1MD1 LINE L1 -3239 3301 2410 603 219 107 114 chr1 81966911 81967326 -160697027 - L1M3b LINE L1 -4989 1292 851 * 1185 307 33 23 chr1 81967323 81967812 -160696541 - L1M3b LINE L1 -5748 533 3 3255 192 93 25 chr1 81967823 81968718 -160695635 - L1MD1 LINE L1 -4145 2395 1440 1369 265 137 40 chr1 81968763 81969238 -160695115 - L1MD1 LINE L1 -5807 733 213 461 94 0 0 chr1 81969239 81969303 -160695050 - HERVL LTR ERVL -3482 2172 2109 1807 55 0 21 chr1 81969303 81969541 -160694812 + MLT2A1 LTR ERVL 210 442 -2 403 270 15 58 chr1 81969543 81969680 -160694673 - L1MD1 LINE L1 -6324 216 86 393 164 164 0 chr1 81969827 81969900 -160694453 - L1MD1 LINE L1 -6438 102 18 317 241 171 29 chr1 81970993 81971163 -160693190 + MLT1L LTR MaLR 420 613 -2 328 250 52 10 chr1 81972750 81972846 -160691507 + MIR SINE MIR 52 151 -111 654 258 49 73 chr1 81972883 81973170 -160691183 + L2 LINE L2 3033 3312 -1 26 74 0 0 chr1 81974465 81974519 -160689834 + AT_rich Low_complexity Low_complexity 1 54 0 21 57 0 0 chr1 81975350 81975385 -160688968 + AT_rich Low_complexity Low_complexity 1 35 0 183 294 98 11 chr1 81975558 81975650 -160688703 - L2 LINE L2 -1335 1979 1880 331 256 13 0 chr1 81976700 81976778 -160687575 + MER5A DNA MER1_type 52 130 -59 2808 167 41 29 chr1 81977004 81977670 -160686683 - L1MC2 LINE L1 -481 5863 5185 1848 65 115 4 chr1 81977716 81977977 -160686376 + AluYa8 SINE Alu 1 290 -20 197 186 14 0 chr1 81978084 81978154 -160686199 + (TA)n Simple_repeat Simple_repeat 2 72 0 4669 100 33 42 chr1 81979010 81979410 -160684943 + L1PB2 LINE L1 5397 5788 -363 270 0 0 0 chr1 81979410 81979440 -160684913 + (CA)n Simple_repeat Simple_repeat 2 31 0 4669 100 33 42 chr1 81979440 81979799 -160684554 + L1PB2 LINE L1 5788 6149 -2 4563 107 12 0 chr1 81979813 81980489 -160683864 + L1PA13 LINE L1 5476 6159 -4 397 260 93 96 chr1 81980988 81981395 -160682958 - MLT1H LTR MaLR -4 545 140 616 218 82 14 chr1 81981468 81981605 -160682748 + MIR SINE MIR 85 234 -28 2061 150 33 25 chr1 81981605 81981966 -160682387 + THE1B LTR MaLR 1 364 0 958 182 61 9 chr1 81982028 81982242 -160682111 + L1MCa LINE L1 2 226 -6200 * 3492 173 31 14 chr1 81982223 81982964 -160681389 + L1MCa LINE L1 871 1624 -4802 1063 147 50 45 chr1 81982964 81983162 -160681191 + THE1B LTR MaLR 166 364 0 1247 184 87 4 chr1 81983227 81983504 -160680849 + L1MCa LINE L1 1694 1993 -4433 1690 218 38 16 chr1 81983521 81983971 -160680382 + L1MCa LINE L1 2943 3402 -3024 957 200 0 16 chr1 81984292 81984477 -160679876 - L1PA16 LINE L1 -4 6162 5981 26 74 0 0 chr1 81985577 81985631 -160678722 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr1 81985763 81985792 -160678561 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr1 81986053 81986091 -160678262 + AT_rich Low_complexity Low_complexity 1 38 0 463 176 191 29 chr1 81986141 81986277 -160678076 + FRAM SINE Alu 1 158 -18 259 344 21 11 chr1 81987725 81987818 -160676535 - L3 LINE CR1 -454 1123 1030 223 333 0 0 chr1 81987935 81988001 -160676352 - L3 LINE CR1 -614 963 898 36 53 0 0 chr1 81988039 81988096 -160676257 + AT_rich Low_complexity Low_complexity 1 57 0 1787 217 113 66 chr1 81988417 81989131 -160675222 + L2 LINE L2 2159 2906 -408 221 300 62 12 chr1 81989409 81989489 -160674864 + MIR SINE MIR 67 150 -58 432 231 143 20 chr1 81992471 81992545 -160671808 - MIR SINE MIR -31 231 167 2157 74 0 18 chr1 81992545 81992830 -160671523 - AluY SINE Alu -15 296 17 432 231 143 20 chr1 81992830 81992902 -160671451 - MIR SINE MIR -95 167 67 1040 68 68 0 chr1 81993795 81993943 -160670410 - L1PA10 LINE L1 -4 6164 6007 25 90 0 0 chr1 81994450 81994517 -160669836 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr1 81994540 81994564 -160669789 + AT_rich Low_complexity Low_complexity 1 24 0 3419 145 118 3 chr1 81994697 81995365 -160668988 - Tigger3b DNA MER2_type -469 762 18 2321 67 0 10 chr1 81995430 81995730 -160668623 - AluY SINE Alu -14 297 1 896 105 15 15 chr1 81995895 81996028 -160668325 + AluSg/x SINE Alu 164 296 -14 1121 235 101 27 chr1 81999106 81999514 -160664839 - HsTC2 DNA Tc2 -3 1895 1282 423 221 18 35 chr1 81999516 81999629 -160664724 - HsTC2 DNA Tc2 -1155 743 633 359 193 211 28 chr1 81999851 81999960 -160664393 - HsTC2 DNA Tc2 -1274 624 496 617 302 45 0 chr1 81999961 82000140 -160664213 - HsTC2 DNA Tc2 -1683 215 29 22 0 0 0 chr1 82000427 82000449 -160663904 + AT_rich Low_complexity Low_complexity 1 22 0 3779 15 14 0 chr1 82002750 82003250 -160661103 - L1P1 LINE L1 -725 5430 4924 5582 28 0 0 chr1 82003250 82003900 -160660453 + L1PA3 LINE L1 5503 6152 -3 285 333 113 42 chr1 82004099 82004453 -160659900 + L2 LINE L2 2214 2592 -722 1505 295 87 26 chr1 82005339 82006020 -160658333 + L2 LINE L2 1527 2248 -1066 2489 87 62 0 chr1 82006287 82006642 -160657711 + MER51B LTR ERV1 1 377 0 876 304 46 25 chr1 82006657 82007095 -160657258 - LTR16A LTR ERVL -3 447 1 317 338 120 25 chr1 82008078 82008395 -160655958 - L1MEd LINE L1 -5311 808 462 21 36 0 0 chr1 82009676 82009704 -160654649 + AT_rich Low_complexity Low_complexity 1 28 0 254 297 0 14 chr1 82011854 82011928 -160652425 - MER5B DNA MER1_type -66 112 40 206 216 14 0 chr1 82012203 82012277 -160652076 + (CAATT)n Simple_repeat Simple_repeat 1 75 0 235 161 49 12 chr1 82012477 82012558 -160651795 + (TA)n Simple_repeat Simple_repeat 1 84 0 548 43 0 0 chr1 82014671 82014740 -160649613 - AluSp/q SINE Alu -19 294 226 17545 163 29 5 chr1 82015086 82021940 -160642413 + L1MA2 LINE L1 704 7723 0 216 200 0 0 chr1 82021943 82021988 -160642365 + A-rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr1 82022788 82022826 -160641527 + AT_rich Low_complexity Low_complexity 1 38 0 32 67 0 0 chr1 82023080 82023140 -160641213 + AT_rich Low_complexity Low_complexity 1 60 0 2778 151 79 5 chr1 82023921 82024479 -160639874 - L1MC2 LINE L1 -22 6322 5724 533 299 16 22 chr1 82024680 82024864 -160639489 + MER5A DNA MER1_type 2 184 -5 384 252 115 36 chr1 82026577 82026716 -160637637 + MIR SINE MIR 96 245 -17 215 318 54 39 chr1 82029864 82029993 -160634360 - MIR3 SINE MIR -74 134 4 538 311 94 5 chr1 82030180 82030392 -160633961 + MIR SINE MIR 24 254 -8 241 368 15 8 chr1 82030602 82030735 -160633618 - L2 LINE L2 -2566 748 615 338 331 8 8 chr1 82030843 82030964 -160633389 + MER5A DNA MER1_type 54 174 -15 195 296 34 45 chr1 82031322 82031410 -160632943 + MIR SINE MIR 168 254 -8 232 204 0 19 chr1 82031932 82031986 -160632367 + GA-rich Low_complexity Low_complexity 1 53 0 213 307 40 13 chr1 82032180 82032255 -160632098 - MIR SINE MIR -6 256 180 344 148 16 16 chr1 82032262 82032323 -160632030 + MIR SINE MIR 197 257 -5 227 353 57 8 chr1 82032348 82032470 -160631883 - MIR SINE MIR -86 176 49 7243 31 13 0 chr1 82032747 82033806 -160630547 - L1PA4 LINE L1 -2 6153 5088 2502 69 0 0 chr1 82033806 82034111 -160630242 - AluY SINE Alu -6 305 1 207 204 0 0 chr1 82034804 82034858 -160629495 + CT-rich Low_complexity Low_complexity 1 54 0 263 265 31 20 chr1 82035021 82035119 -160629234 - MIR SINE MIR -28 234 136 363 208 8 128 chr1 82038859 82038984 -160625369 + MIR SINE MIR 45 154 -108 4442 110 90 48 chr1 82039014 82039803 -160624550 - LTR12 LTR ERV1 0 826 5 2249 198 23 34 chr1 82039818 82040428 -160623925 - pTR5 LTR ERV1 -1093 1345 743 224 253 160 0 chr1 82040429 82040504 -160623849 + MIR SINE MIR 173 259 -3 1074 131 6 17 chr1 82040591 82040766 -160623587 + MER39B LTR ERV1 1 173 -480 671 126 17 126 chr1 82040768 82040951 -160623402 + MER39B LTR ERV1 502 653 0 354 277 21 11 chr1 82041955 82042049 -160622304 + L2 LINE L2 3219 3313 0 390 284 16 45 chr1 82042878 82043068 -160621285 - MIR SINE MIR -14 248 15 25 90 0 0 chr1 82043308 82043375 -160620978 + AT_rich Low_complexity Low_complexity 1 67 0 300 222 0 0 chr1 82043829 82043892 -160620461 - MER113 DNA MER1_type? -128 393 331 4360 116 90 99 chr1 82044437 82045876 -160618477 - pTR5 LTR ERV1 0 2438 382 1160 231 122 45 chr1 82046018 82046486 -160617867 - L1MC4 LINE L1 -1 8041 7538 3143 120 65 41 chr1 82046639 82047071 -160617282 - MER41C LTR ERV1 0 554 105 2422 8 0 0 chr1 82047071 82047336 -160617017 + AluYa5 SINE Alu 38 302 -9 3143 120 65 41 chr1 82047336 82047444 -160616909 - MER41C LTR ERV1 -449 105 1 3444 215 51 13 chr1 82047591 82048563 -160615790 - L1ME1 LINE L1 -4 6231 5227 579 261 90 17 chr1 82048588 82048822 -160615531 - L1ME1 LINE L1 -4323 2073 1823 629 288 48 24 chr1 82048829 82049488 -160614865 - L1ME1 LINE L1 -4832 1383 674 2539 46 3 0 chr1 82049612 82049917 -160614436 - AluY SINE Alu -5 306 1 386 299 104 31 chr1 82050190 82050478 -160613875 - L1ME1 LINE L1 -5989 407 99 225 386 60 38 chr1 82050737 82050921 -160613432 - MER5A DNA MER1_type -1 188 1 204 337 33 0 chr1 82050935 82051027 -160613326 + MER5A DNA MER1_type 9 103 -86 2599 180 29 14 chr1 82051027 82051074 -160613279 - MLT2B1 LTR ERVL -1 519 474 189 0 0 0 chr1 82051074 82051095 -160613258 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 2599 180 29 14 chr1 82051095 82051446 -160612907 - MLT2B1 LTR ERVL -46 474 108 1685 171 36 0 chr1 82051446 82051743 -160612610 + AluSx SINE Alu 1 307 0 2599 180 29 14 chr1 82051743 82051853 -160612500 - MLT2B1 LTR ERVL -412 108 1 524 375 9 5 chr1 82052324 82052577 -160611776 + MIR SINE MIR 9 262 0 1065 290 94 37 chr1 82052840 82053457 -160610896 - Charlie7 DNA MER1_type -1929 683 32 973 199 37 23 chr1 82054121 82054337 -160610016 - MER20 DNA MER1_type 0 219 1 181 349 16 79 chr1 82054754 82054880 -160609473 + L2 LINE L2 2999 3116 -156 643 327 85 16 chr1 82055040 82055288 -160609065 - Charlie8 DNA MER1_type -2152 265 1 22 99 0 0 chr1 82055759 82055830 -160608523 + AT_rich Low_complexity Low_complexity 1 71 0 262 268 18 71 chr1 82056826 82056938 -160607415 - MIR SINE MIR -46 216 111 190 314 0 20 chr1 82057014 82057065 -160607288 + MIR SINE MIR 23 72 -136 520 310 38 75 chr1 82057109 82057516 -160606837 - LTR16B LTR ERVL -3 447 1 528 241 35 14 chr1 82057598 82057743 -160606610 - MIR SINE MIR -21 241 94 343 143 76 118 chr1 82057823 82057942 -160606411 + L1ME4a LINE L1 5952 6065 -56 1666 283 74 14 chr1 82057951 82058506 -160605847 - MLT1G LTR MaLR 0 590 3 27 29 0 0 chr1 82058583 82058617 -160605736 + AT_rich Low_complexity Low_complexity 1 34 0 482 347 32 9 chr1 82059367 82059586 -160604767 + MIR SINE MIR 23 246 -16 297 191 0 48 chr1 82059931 82059994 -160604359 + L2 LINE L2 3254 3313 0 275 338 89 13 chr1 82060558 82060715 -160603638 - MIR SINE MIR -78 184 16 304 244 22 11 chr1 82060716 82060806 -160603547 + L2 LINE L2 2317 2407 -907 776 310 98 46 chr1 82060825 82061345 -160603008 + L2 LINE L2 2751 3301 -12 23 0 0 0 chr1 82062824 82062847 -160601506 + AT_rich Low_complexity Low_complexity 1 23 0 355 286 70 48 chr1 82063898 82064075 -160600278 + MIR SINE MIR 63 248 -14 1073 352 28 10 chr1 82064109 82064642 -160599711 - L2 LINE L2 -9 3304 2762 252 403 26 0 chr1 82064704 82064858 -160599495 - MIR SINE MIR -80 182 25 2480 156 11 23 chr1 82065916 82066351 -160598002 - Tigger2a DNA MER2_type -3 431 2 2137 170 6 3 chr1 82066634 82066998 -160597355 - MER47A DNA MER2_type 0 366 2 1949 138 13 45 chr1 82067078 82067454 -160596899 - THE1B LTR MaLR 0 364 1 329 357 98 45 chr1 82068026 82068382 -160595971 - L2 LINE L2 -903 2411 2037 302 349 34 27 chr1 82069130 82069279 -160595074 - MIR SINE MIR -94 168 19 1628 170 24 12 chr1 82070534 82070863 -160593490 - L1MB8 LINE L1 -2 6176 5844 327 301 231 0 chr1 82071331 82071474 -160592879 + MER5A DNA MER1_type 10 185 -4 207 0 0 0 chr1 82071539 82071562 -160592791 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 4701 206 25 31 chr1 82071864 82072047 -160592306 + L1M1 LINE L1 1 184 -7381 2273 78 0 0 chr1 82072047 82072353 -160592000 + AluY SINE Alu 1 306 0 4701 206 25 31 chr1 82072353 82073205 -160591148 + L1M1 LINE L1 184 1031 -6534 262 246 169 17 chr1 82073207 82073281 -160591072 + MIR SINE MIR 97 158 -104 243 0 0 0 chr1 82073281 82073308 -160591045 + (TG)n Simple_repeat Simple_repeat 2 28 0 262 246 169 17 chr1 82073308 82073351 -160591002 + MIR SINE MIR 158 232 -30 426 281 127 70 chr1 82073459 82073901 -160590452 - L1M4 LINE L1 -1563 4583 4117 315 304 72 2 chr1 82073905 82074045 -160590308 - L1M4 LINE L1 -2302 3844 3678 249 109 43 22 chr1 82074045 82074091 -160590262 - MLT1B LTR MaLR -1 389 343 1574 165 35 64 chr1 82074252 82074598 -160589755 - MLT1B LTR MaLR -54 336 1 205 152 0 0 chr1 82074660 82074693 -160589660 + CT-rich Low_complexity Low_complexity 2 34 0 230 206 14 0 chr1 82075703 82075776 -160588577 + (TA)n Simple_repeat Simple_repeat 1 74 0 192 77 0 0 chr1 82076018 82076044 -160588309 + (TTC)n Simple_repeat Simple_repeat 2 27 0 489 111 0 12 chr1 82076419 82076500 -160587853 + MADE1 DNA Mariner 1 80 0 958 31 85 8 chr1 82076656 82076785 -160587568 + MER85 DNA T2_type 1 139 0 1282 236 19 9 chr1 82077872 82078153 -160586200 + L1MA9 LINE L1 1 1356 -5750 2231 216 110 59 chr1 82078158 82079438 -160584915 + L1MA9 LINE L1 1297 2632 -4475 5076 156 59 53 chr1 82079452 82080877 -160583476 + L1MA9 LINE L1 5818 7272 0 333 284 131 31 chr1 82080885 82081206 -160583147 + HAL1 LINE L1 2145 2497 -10 22 0 0 0 chr1 82081206 82081228 -160583125 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 82082292 82082313 -160582040 + AT_rich Low_complexity Low_complexity 1 21 0 409 290 138 5 chr1 82082366 82082583 -160581770 + L1ME4a LINE L1 5610 5855 -266 253 193 35 0 chr1 82082761 82082818 -160581535 - L1ME4a LINE L1 -104 6017 5959 231 150 0 0 chr1 82083213 82083253 -160581100 - L1ME4a LINE L1 -211 5951 5912 719 288 63 0 chr1 82083379 82083584 -160580769 - MIR SINE MIR -30 232 15 368 342 46 14 chr1 82083678 82083959 -160580394 - L1M4 LINE L1 -1069 5077 4788 1348 278 99 37 chr1 82083976 82085159 -160579194 - L1M4 LINE L1 -2780 3366 2111 335 325 53 9 chr1 82085197 82085425 -160578928 - L1MEc LINE L1 -1283 5143 4906 1654 257 85 110 chr1 82085437 82086036 -160578317 - L1MEc LINE L1 -1762 4664 4051 388 78 0 0 chr1 82086036 82086100 -160578253 - L1MA8 LINE L1 0 6291 6228 1654 257 85 110 chr1 82086100 82086360 -160577993 - L1MEc LINE L1 -2375 4051 3786 461 301 0 22 chr1 82086360 82086496 -160577857 - MER63A DNA MER1_type -1 209 77 1654 257 85 110 chr1 82086496 82087718 -160576635 - L1MEc LINE L1 -2640 3786 2503 309 219 151 34 chr1 82087759 82087878 -160576475 - L1MEc LINE L1 -4130 2477 2345 2234 78 7 0 chr1 82087940 82088235 -160576118 + AluY SINE Alu 1 297 -14 21 0 0 0 chr1 82088389 82088410 -160575943 + AT_rich Low_complexity Low_complexity 1 21 0 497 254 75 74 chr1 82088419 82089027 -160575326 - L1MEc LINE L1 -4579 2028 1264 21 36 0 0 chr1 82089033 82089061 -160575292 + AT_rich Low_complexity Low_complexity 1 28 0 354 232 162 0 chr1 82089123 82089220 -160575133 + MER3 DNA MER1_type 1 113 -96 558 241 159 39 chr1 82089220 82089452 -160574901 + MLT1A1 LTR MaLR 1 260 -105 375 23 0 0 chr1 82089456 82089500 -160574853 + (TG)n Simple_repeat Simple_repeat 2 45 0 797 140 15 7 chr1 82089500 82089636 -160574717 - L1M2 LINE L1 -524 5788 5652 1038 257 40 0 chr1 82089639 82089888 -160574465 - MLT1G LTR MaLR -318 272 14 272 330 81 58 chr1 82089933 82090191 -160574162 - MLT1G-int LTR MaLR -34 1337 1074 530 226 44 7 chr1 82091460 82091597 -160572756 - MIR SINE MIR -6 256 115 240 357 10 10 chr1 82091610 82091708 -160572645 - L2 LINE L2 -303 2969 2872 321 358 51 51 chr1 82092687 82092902 -160571451 + MIR SINE MIR 15 229 -33 2148 110 0 0 chr1 82093063 82093353 -160571000 + AluSx SINE Alu 1 290 -22 651 277 122 56 chr1 82093588 82093921 -160570432 + MLT1J1 LTR MaLR 18 328 -118 13719 142 27 24 chr1 82093921 82095131 -160569222 + Tigger1 DNA MER2_type 4 1209 -1209 1533 126 126 8 chr1 82095131 82095410 -160568943 - AluSq SINE Alu 0 309 1 13719 142 27 24 chr1 82095410 82096402 -160567951 + Tigger1 DNA MER2_type 1209 2218 -200 1433 226 0 7 chr1 82096402 82096690 -160567663 - AluJo SINE Alu -26 286 1 13719 142 27 24 chr1 82096690 82096891 -160567462 + Tigger1 DNA MER2_type 2218 2417 -1 651 277 122 56 chr1 82096891 82096951 -160567402 + MLT1J1 LTR MaLR 328 437 -9 1039 285 26 47 chr1 82097246 82097629 -160566724 - LTR16A LTR ERVL -22 428 54 26 74 0 0 chr1 82097716 82097770 -160566583 + AT_rich Low_complexity Low_complexity 1 54 0 4646 166 42 28 chr1 82097811 82099085 -160565268 - L1PA16 LINE L1 0 6166 4873 * 10519 213 9 49 chr1 82099084 82099644 -160564709 + L1PA15-16 LINE L1 2700 3281 -3568 1862 112 60 0 chr1 82099644 82099911 -160564442 + AluSc SINE Alu 1 283 -26 10519 213 9 49 chr1 82099911 82099949 -160564404 + L1PA15-16 LINE L1 3281 3319 -3530 242 111 0 0 chr1 82099949 82099985 -160564368 + Alu SINE Alu 248 283 -16 10519 213 9 49 chr1 82099985 82101032 -160563321 + L1PA15-16 LINE L1 3319 4407 -2442 2511 27 7 3 chr1 82101032 82101330 -160563023 + AluY SINE Alu 1 299 -12 10519 213 9 49 chr1 82101330 82102631 -160561722 + L1PA15-16 LINE L1 4407 5554 -1295 281 303 98 15 chr1 82104133 82104265 -160560088 + L3b LINE CR1 1422 1564 -19 237 296 191 0 chr1 82105814 82105929 -160558424 - MIR SINE MIR -121 141 5 453 36 0 0 chr1 82105991 82106046 -160558307 + (TA)n Simple_repeat Simple_repeat 1 55 0 183 42 0 0 chr1 82106099 82106123 -160558230 + (TA)n Simple_repeat Simple_repeat 2 25 0 558 284 12 43 chr1 82106423 82106585 -160557768 - MER45A DNA AcHobo -2 176 20 445 356 27 7 chr1 82107998 82108144 -160556209 - L2 LINE L2 -3 3269 3121 874 287 193 20 chr1 82108219 82108606 -160555747 + L2 LINE L2 2629 2948 -365 2182 89 0 38 chr1 82108606 82108944 -160555409 - AluY SINE Alu 0 311 1 874 287 193 20 chr1 82108944 82109141 -160555212 + L2 LINE L2 2948 3304 -9 442 255 29 0 chr1 82109308 82109410 -160554943 - MIR SINE MIR -49 213 109 361 236 45 45 chr1 82109590 82109700 -160554653 - MER94 DNA DNA 0 134 25 1639 290 14 16 chr1 82109701 82110215 -160554138 - L1MEc LINE L1 -5848 548 36 317 277 136 13 chr1 82110637 82110792 -160553561 + L2 LINE L2 3130 3303 -10 1290 273 92 26 chr1 82110905 82111370 -160552983 - MLT1F1 LTR MaLR 0 567 72 320 264 101 31 chr1 82111859 82111988 -160552365 + MIR SINE MIR 1 138 -124 27 0 0 0 chr1 82113915 82113942 -160550411 + AT_rich Low_complexity Low_complexity 1 27 0 1877 129 4 4 chr1 82114408 82114687 -160549666 - AluSx SINE Alu -13 299 21 378 344 80 49 chr1 82114699 82114785 -160549568 + L2 LINE L2 2518 2600 -714 180 0 0 0 chr1 82114785 82114805 -160549548 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 378 344 80 49 chr1 82114805 82115006 -160549347 + L2 LINE L2 2600 2814 -500 308 195 81 11 chr1 82115287 82115374 -160548979 + MIR SINE MIR 111 203 -59 219 36 0 0 chr1 82115586 82115614 -160548739 + (TG)n Simple_repeat Simple_repeat 2 29 0 270 270 0 40 chr1 82115683 82115757 -160548596 - MIR SINE MIR -4 258 188 247 272 43 68 chr1 82115828 82115990 -160548363 - L2 LINE L2 -1211 2103 1946 1490 180 19 1 chr1 82116000 82116323 -160548030 + MER54A LTR ERVL 16 377 -524 2627 170 20 52 chr1 82116538 82116868 -160547485 + MER54A LTR ERVL 383 691 -210 2889 113 39 7 chr1 82116868 82117310 -160547043 + LTR22A LTR ERVK 1 456 -2 2627 170 20 52 chr1 82117310 82117515 -160546838 + MER54A LTR ERVL 691 901 0 324 332 34 5 chr1 82117515 82117720 -160546633 - L2 LINE L2 -1374 1940 1730 2152 101 28 0 chr1 82118768 82119055 -160545298 + AluSc SINE Alu 14 308 -1 216 229 59 12 chr1 82119331 82119501 -160544852 + (TA)n Simple_repeat Simple_repeat 2 179 0 244 136 12 62 chr1 82119514 82119618 -160544735 + (TTA)n Simple_repeat Simple_repeat 1 98 0 211 296 48 38 chr1 82121127 82121284 -160543069 + MIR SINE MIR 101 258 -4 438 306 38 12 chr1 82121637 82121797 -160542556 + MIR3 SINE MIR 37 200 -8 1770 203 43 80 chr1 82122092 82122679 -160541674 + MER34B LTR ERV1 1 565 0 277 326 94 99 chr1 82122747 82123121 -160541232 - L2 LINE L2 0 3272 2901 24 32 0 0 chr1 82123575 82123606 -160540747 + AT_rich Low_complexity Low_complexity 1 31 0 443 301 85 15 chr1 82123709 82123908 -160540445 + MIR SINE MIR 2 214 -48 24 53 0 0 chr1 82124028 82124066 -160540287 + AT_rich Low_complexity Low_complexity 1 38 0 342 291 66 70 chr1 82124155 82124244 -160540109 - MIR SINE MIR -17 245 157 2437 76 0 0 chr1 82124244 82124546 -160539807 - AluY SINE Alu -9 302 1 342 291 66 70 chr1 82124546 82124683 -160539670 - MIR SINE MIR -105 157 20 204 67 0 0 chr1 82124895 82124925 -160539428 + (A)n Simple_repeat Simple_repeat 1 30 0 729 297 20 0 chr1 82125970 82126172 -160538181 - MIR SINE MIR -7 255 50 716 301 23 19 chr1 82127028 82127287 -160537066 - MIR SINE MIR 0 262 3 936 246 145 50 chr1 82127441 82127904 -160536449 + MLT1L LTR MaLR 93 599 -16 7683 22 0 3 chr1 82128297 82129433 -160534920 - L1PA3 LINE L1 -1 6154 5020 1886 225 60 70 chr1 82129504 82130200 -160534153 - L1ME3 LINE L1 -6 6156 5472 25 31 0 0 chr1 82130289 82130321 -160534032 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 82131801 82131839 -160532514 + AT_rich Low_complexity Low_complexity 1 38 0 198 71 0 0 chr1 82133492 82133520 -160530833 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 780 292 54 59 chr1 82133520 82133911 -160530442 - LTR67 LTR ERVL -14 543 155 357 211 13 0 chr1 82133921 82133997 -160530356 + MER94 DNA DNA 24 100 -34 323 253 33 65 chr1 82134299 82134442 -160529911 + MER5A DNA MER1_type 7 155 -34 605 294 126 5 chr1 82136175 82136389 -160527964 - MIR SINE MIR -6 256 17 203 279 0 0 chr1 82136863 82136906 -160527447 + L2 LINE L2 3219 3261 -11 261 206 120 43 chr1 82136906 82136998 -160527355 + L1MC4 LINE L1 6605 6703 -1339 257 281 0 0 chr1 82136999 82137056 -160527297 + (TA)n Simple_repeat Simple_repeat 1 57 0 365 293 24 61 chr1 82138006 82138170 -160526183 - MIR SINE MIR -56 206 49 1804 159 0 20 chr1 82138632 82138934 -160525419 - MLT1B LTR MaLR 0 390 95 21 0 0 0 chr1 82138934 82138955 -160525398 + AT_rich Low_complexity Low_complexity 1 21 0 43517 41 9 0 chr1 82138955 82145049 -160519304 - L1PA4 LINE L1 -8 6147 2 510 156 0 98 chr1 82145050 82145172 -160519181 - MLT1B LTR MaLR -280 110 1 764 240 6 12 chr1 82145412 82145583 -160518770 - MER97c DNA MER1_type? -911 179 10 698 281 83 0 chr1 82146576 82146804 -160517549 + MIR SINE MIR 10 256 -6 2148 107 4 0 chr1 82147271 82147595 -160516758 + AluSg SINE Alu 1 325 0 1695 217 55 41 chr1 82147830 82148342 -160516011 - L1ME3A LINE L1 -7 6163 5645 387 286 95 37 chr1 82150881 82151070 -160513283 - MIR SINE MIR -58 204 5 320 298 158 0 chr1 82151090 82151248 -160513105 + MIR SINE MIR 65 247 -15 280 170 0 0 chr1 82151697 82151744 -160512609 - MLT1F1 LTR MaLR -520 47 1 627 366 27 61 chr1 82151744 82152332 -160512021 + L2 LINE L2 2287 2854 -460 436 229 10 0 chr1 82152381 82152477 -160511876 - MIR SINE MIR -4 258 162 207 336 86 26 chr1 82152803 82152919 -160511434 + L2 LINE L2 3182 3304 -9 204 338 101 14 chr1 82153135 82153274 -160511079 + L2 LINE L2 2915 3065 -207 565 257 165 68 chr1 82153443 82153782 -160510571 - L2 LINE L2 0 3313 2942 27 0 0 0 chr1 82156267 82156294 -160508059 + AT_rich Low_complexity Low_complexity 1 27 0 360 0 0 0 chr1 82156333 82156373 -160507980 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1254 203 0 31 chr1 82156376 82156637 -160507716 - AluJo SINE Alu -30 282 30 358 231 13 0 chr1 82156811 82156889 -160507464 + MLT1D LTR MaLR 1 79 -426 1780 210 83 25 chr1 82156902 82157374 -160506979 + MLT1D LTR MaLR 7 505 0 235 308 39 13 chr1 82157477 82157555 -160506798 - MIR SINE MIR -21 241 162 302 301 0 41 chr1 82157585 82157708 -160506645 + L2 LINE L2 2693 2810 -504 267 279 58 52 chr1 82157708 82157862 -160506491 - MER5A DNA MER1_type 0 189 35 * 523 283 20 20 chr1 82157735 82157887 -160506466 + MER5A DNA MER1_type 37 188 -1 430 338 46 0 chr1 82157910 82158061 -160506292 + L2 LINE L2 2825 2982 -331 460 264 131 21 chr1 82158773 82159133 -160505220 - MLT1J2 LTR MaLR -23 427 7 319 237 81 104 chr1 82159259 82159470 -160504883 + L2 LINE L2 3108 3313 0 28 29 0 0 chr1 82160584 82160619 -160503734 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 82160653 82160681 -160503672 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 82161482 82161503 -160502850 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 82162403 82162424 -160501929 + AT_rich Low_complexity Low_complexity 1 21 0 189 238 0 0 chr1 82163854 82163896 -160500457 - L2 LINE L2 -234 3038 2997 268 352 106 40 chr1 82164092 82164319 -160500034 - L2 LINE L2 -520 2794 2553 2039 171 25 25 chr1 82164342 82164740 -160499613 - LTR23 LTR ERV1 -39 398 1 198 343 42 42 chr1 82165828 82165971 -160498382 + L2 LINE L2 3166 3308 -5 1746 193 30 6 chr1 82166254 82166585 -160497768 + MER2 DNA MER2_type 6 344 -1 444 214 143 0 chr1 82166654 82166794 -160497559 - MIR SINE MIR -1 261 102 2976 166 54 66 chr1 82167575 82168274 -160496079 + LTR8 LTR ERV1 1 691 0 270 372 18 9 chr1 82169027 82169140 -160495213 - L2 LINE L2 -14 3258 3145 287 296 0 67 chr1 82169159 82169294 -160495059 - MER5A DNA MER1_type -28 161 36 390 226 168 32 chr1 82169322 82169477 -160494876 + MER5B DNA MER1_type 1 176 -2 202 261 34 0 chr1 82169903 82169991 -160494362 + (TA)n Simple_repeat Simple_repeat 1 91 0 503 234 24 0 chr1 82170380 82170504 -160493849 - MER105 DNA DNA -42 162 36 21 0 0 0 chr1 82170640 82170661 -160493692 + AT_rich Low_complexity Low_complexity 1 21 0 267 275 22 11 chr1 82170676 82170767 -160493586 - MLT1J1 LTR MaLR -3 443 352 423 0 0 0 chr1 82170958 82171005 -160493348 + (TA)n Simple_repeat Simple_repeat 1 47 0 401 157 24 24 chr1 82171133 82171216 -160493137 - MLT1J2 LTR MaLR -367 83 1 240 111 0 0 chr1 82171682 82171718 -160492635 + (CA)n Simple_repeat Simple_repeat 2 37 0 505 267 133 0 chr1 82173577 82173742 -160490611 + MIR SINE MIR 15 201 -61 241 290 0 43 chr1 82174605 82174674 -160489679 + MIR SINE MIR 99 164 -98 375 338 137 26 chr1 82175759 82176102 -160488251 + L2 LINE L2 2892 3272 0 276 307 94 42 chr1 82176128 82176340 -160488013 - MIR SINE MIR -10 252 30 833 251 29 26 chr1 82177471 82177743 -160486610 + L1ME1 LINE L1 5864 6295 -39 2618 116 6 0 chr1 82178258 82178620 -160485733 + THE1B LTR MaLR 1 364 0 484 266 246 5 chr1 82180034 82180241 -160484112 + MIR SINE MIR 3 259 -3 2062 132 0 0 chr1 82180360 82180648 -160483705 + AluSg SINE Alu 1 288 -22 25 0 0 0 chr1 82181093 82181118 -160483235 + AT_rich Low_complexity Low_complexity 1 25 0 253 384 40 0 chr1 82181975 82182100 -160482253 + L2 LINE L2 3137 3266 -6 783 327 48 66 chr1 82182907 82183517 -160480836 - L2 LINE L2 -5 3308 2707 285 258 91 0 chr1 82183541 82183607 -160480746 - L2 LINE L2 -55 3258 3187 868 308 155 14 chr1 82183640 82184273 -160480080 - L2 LINE L2 -652 2662 1941 1226 15 0 0 chr1 82184319 82184456 -160479897 - AluYa5/8 SINE Alu -4 306 170 255 266 0 25 chr1 82184481 82184560 -160479793 + Tigger5 DNA MER2_type 2238 2314 -9 219 296 88 0 chr1 82184568 82184693 -160479660 - L2 LINE L2 -1591 1723 1588 193 284 15 30 chr1 82184690 82184757 -160479596 + L2 LINE L2 3207 3272 0 * 184 294 39 0 chr1 82184773 82184824 -160479529 - MIR SINE MIR -134 74 22 1790 140 0 120 chr1 82186013 82186364 -160477989 - MER1B DNA MER1_type 0 339 31 230 190 38 89 chr1 82186422 82186501 -160477852 - MER116 DNA Mariner 0 80 6 27 0 0 0 chr1 82186740 82186767 -160477586 + AT_rich Low_complexity Low_complexity 1 27 0 2577 53 0 0 chr1 82187124 82187426 -160476927 + AluY SINE Alu 1 302 -9 281 269 105 29 chr1 82187849 82188020 -160476333 + Harlequin LTR ERV1 187 370 -6279 623 303 35 9 chr1 82188209 82188437 -160475916 + Harlequin LTR ERV1 784 1017 -6768 928 289 63 41 chr1 82188643 82189361 -160474992 + Harlequin LTR ERV1 972 2034 -4957 475 118 0 0 chr1 82189361 82189429 -160474924 + LTR18B LTR ERVL 335 402 -212 456 254 0 67 chr1 82189511 82189704 -160474649 + GA-rich Low_complexity Low_complexity 1 180 0 1905 324 48 58 chr1 82189751 82191238 -160473115 + Harlequin LTR ERV1 2851 5321 -2464 2138 92 23 13 chr1 82191238 82191541 -160472812 + AluSq SINE Alu 1 306 -7 1905 324 48 58 chr1 82191541 82191973 -160472380 + Harlequin LTR ERV1 5321 5756 -2029 628 289 52 71 chr1 82192714 82193275 -160471078 + Harlequin LTR ERV1 3386 3935 -2961 27 49 0 0 chr1 82194342 82194383 -160469970 + AT_rich Low_complexity Low_complexity 1 41 0 241 269 149 0 chr1 82194863 82195004 -160469349 - L1ME3A LINE L1 -165 6005 5844 604 186 26 0 chr1 82195012 82195125 -160469228 - MLT1E2 LTR MaLR -193 433 318 1212 87 87 27 chr1 82195126 82195310 -160469043 - MER30 DNA MER1_type -1 229 35 253 260 90 68 chr1 82195322 82195499 -160468854 - L1ME3A LINE L1 -361 5809 5629 1029 182 16 5 chr1 82196853 82197040 -160467313 - MER5A DNA MER1_type 0 189 1 318 324 124 76 chr1 82197274 82197629 -160466724 - L2 LINE L2 -1 3271 2900 2491 240 27 19 chr1 82198274 82198574 -160465779 - MLT1E2 LTR MaLR -1 625 329 1478 121 27 0 chr1 82198574 82198797 -160465556 - MER30 DNA MER1_type -1 229 1 2491 240 27 19 chr1 82198797 82199116 -160465237 - MLT1E2 LTR MaLR -297 329 1 549 283 28 11 chr1 82201440 82201617 -160462736 - MIR SINE MIR -46 216 37 2238 105 3 3 chr1 82201846 82202152 -160462201 - AluSx SINE Alu -2 310 5 24 32 0 0 chr1 82202211 82202242 -160462111 + AT_rich Low_complexity Low_complexity 1 31 0 326 315 19 68 chr1 82202616 82202778 -160461575 - MIR3 SINE MIR -39 169 16 1936 151 3 0 chr1 82204984 82205276 -160459077 - AluSx SINE Alu -19 293 1 206 280 173 0 chr1 82205501 82205576 -160458777 - L2 LINE L2 -2 3270 3183 22 35 0 0 chr1 82205663 82205692 -160458661 + AT_rich Low_complexity Low_complexity 1 29 0 1409 290 60 26 chr1 82207067 82207802 -160456551 + L2 LINE L2 2491 3242 -71 21 0 0 0 chr1 82208164 82208185 -160456168 + AT_rich Low_complexity Low_complexity 1 21 0 307 232 95 0 chr1 82209319 82209414 -160454939 + L2 LINE L2 2243 2346 -968 1049 285 97 7 chr1 82209571 82209995 -160454358 + LTR16B LTR ERVL 1 462 -2 267 79 0 0 chr1 82210034 82210072 -160454281 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 29 0 0 chr1 82210794 82210828 -160453525 + AT_rich Low_complexity Low_complexity 1 34 0 2196 102 3 3 chr1 82213696 82213991 -160450362 - AluSx SINE Alu -13 299 5 24 32 0 0 chr1 82214050 82214081 -160450272 + AT_rich Low_complexity Low_complexity 1 31 0 326 315 19 68 chr1 82214455 82214617 -160449736 - MIR3 SINE MIR -39 169 16 1936 151 3 0 chr1 82216828 82217120 -160447233 - AluSx SINE Alu -19 293 1 206 280 173 0 chr1 82217345 82217420 -160446933 - L2 LINE L2 -2 3270 3183 22 35 0 0 chr1 82217507 82217536 -160446817 + AT_rich Low_complexity Low_complexity 1 29 0 1409 290 60 26 chr1 82218911 82219646 -160444707 + L2 LINE L2 2491 3242 -71 21 0 0 0 chr1 82220009 82220030 -160444323 + AT_rich Low_complexity Low_complexity 1 21 0 307 232 95 0 chr1 82221164 82221259 -160443094 + L2 LINE L2 2243 2346 -968 1049 285 97 7 chr1 82221416 82221840 -160442513 + LTR16B LTR ERVL 1 462 -2 411 56 0 0 chr1 82221879 82221933 -160442420 + (TG)n Simple_repeat Simple_repeat 2 55 0 221 0 0 33 chr1 82221934 82221964 -160442389 + (GA)n Simple_repeat Simple_repeat 2 30 0 844 276 125 27 chr1 82222171 82222580 -160441773 + MLT1J LTR MaLR 27 475 -36 1165 218 118 57 chr1 82223216 82223656 -160440697 - MLT1C LTR MaLR 0 467 1 188 392 100 8 chr1 82224025 82224145 -160440208 - L2 LINE L2 0 3272 3142 22 0 0 0 chr1 82224452 82224474 -160439879 + AT_rich Low_complexity Low_complexity 1 22 0 1099 58 0 0 chr1 82225113 82225252 -160439101 + MER85 DNA T2_type 1 139 0 234 0 0 0 chr1 82226151 82226177 -160438176 + (TTA)n Simple_repeat Simple_repeat 2 27 0 333 281 33 25 chr1 82226611 82226732 -160437621 - MIR SINE MIR -57 151 30 285 284 213 35 chr1 82227634 82227803 -160436550 + MIR SINE MIR 8 206 -56 407 206 64 78 chr1 82227936 82228077 -160436276 + MIR SINE MIR 98 236 -26 272 364 47 0 chr1 82228263 82228392 -160435961 - L2 LINE L2 -785 2529 2395 291 266 162 12 chr1 82228444 82228617 -160435736 - L2 LINE L2 -1369 1945 1747 1945 151 7 7 chr1 82228618 82228917 -160435436 + AluSx SINE Alu 1 299 -13 27 29 0 0 chr1 82231786 82231820 -160432533 + AT_rich Low_complexity Low_complexity 1 34 0 1724 169 0 28 chr1 82232833 82233123 -160431230 + AluJo SINE Alu 1 282 -30 276 290 69 76 chr1 82235317 82235462 -160428891 - MIR3 SINE MIR -46 162 19 195 42 0 0 chr1 82236241 82236265 -160428088 + (TG)n Simple_repeat Simple_repeat 1 24 0 354 280 118 8 chr1 82237039 82237234 -160427119 + MIR SINE MIR 41 252 -10 267 313 12 0 chr1 82238604 82238684 -160425669 + L2 LINE L2 3179 3259 -13 28 0 0 0 chr1 82239197 82239225 -160425128 + AT_rich Low_complexity Low_complexity 1 28 0 999 135 45 6 chr1 82239459 82239637 -160424716 - L1MA9 LINE L1 0 6312 6128 180 0 0 0 chr1 82240237 82240257 -160424096 + (T)n Simple_repeat Simple_repeat 1 20 0 836 262 177 8 chr1 82241518 82241869 -160422484 - L2 LINE L2 -88 3225 2816 507 306 29 29 chr1 82241934 82242104 -160422249 - MER5B DNA MER1_type -1 177 8 318 281 35 70 chr1 82242733 82242847 -160421506 - MIR SINE MIR -76 132 23 235 333 95 14 chr1 82245105 82245252 -160419101 + L2 LINE L2 2471 2629 -685 2678 232 100 33 chr1 82245263 82246909 -160417444 - L1ME1 LINE L1 -5 6161 4382 14736 98 30 12 chr1 82246933 82249401 -160414952 + L1HS LINE L1 2729 5280 -875 9008 28 1 0 chr1 82249401 82249778 -160414575 - L1PA2 LINE L1 -2 6153 5778 2694 42 0 0 chr1 82249778 82250089 -160414264 - AluYa5 SINE Alu 0 311 1 9008 28 1 0 chr1 82250089 82251560 -160412793 - L1PA2 LINE L1 -377 5778 4313 14736 98 30 12 chr1 82251560 82252453 -160411900 + L1HS LINE L1 5280 6155 0 393 21 0 0 chr1 82252461 82252509 -160411844 - L1PA2 LINE L1 -1812 4334 4287 184 211 0 0 chr1 82254700 82254738 -160409615 + MIR3 SINE MIR 160 197 -11 485 220 23 38 chr1 82254872 82255004 -160409349 - L2 LINE L2 0 3313 3184 877 212 26 58 chr1 82255362 82255588 -160408765 + MER58A DNA MER1_type 5 223 -1 2004 131 136 16 chr1 82255634 82256016 -160408337 - MSTA LTR MaLR 0 428 1 711 258 47 4 chr1 82256276 82256509 -160407844 - Charlie2 DNA MER1_type -1 2861 2619 671 274 101 28 chr1 82256608 82256925 -160407428 + LTR16A LTR ERVL 111 450 0 * 2529 213 56 25 chr1 82256925 82257650 -160406703 - Charlie2 DNA MER1_type -239 2623 1876 376 275 28 50 chr1 82259363 82259545 -160404808 - MER5B DNA MER1_type 0 178 1 557 244 98 49 chr1 82259689 82259853 -160404500 + MER5A DNA MER1_type 18 189 0 220 257 29 0 chr1 82259919 82259989 -160404364 + CT-rich Low_complexity Low_complexity 2 73 0 226 219 0 0 chr1 82260673 82260714 -160403639 + (CA)n Simple_repeat Simple_repeat 1 41 0 224 298 19 58 chr1 82260933 82261037 -160403316 - MER5B DNA MER1_type -78 100 1 527 255 67 0 chr1 82261176 82261325 -160403028 - MIR SINE MIR -70 192 34 657 279 34 0 chr1 82261332 82261511 -160402842 - MER5A DNA MER1_type 0 189 5 566 196 163 0 chr1 82261568 82261721 -160402632 + MER5B DNA MER1_type 1 178 0 276 289 41 0 chr1 82262632 82262753 -160401600 - L1MEd LINE L1 -5075 1044 919 2033 155 0 7 chr1 82262771 82263081 -160401272 - AluSx SINE Alu -2 310 3 24 0 0 0 chr1 82264082 82264106 -160400247 + AT_rich Low_complexity Low_complexity 1 24 0 236 94 0 0 chr1 82264204 82264236 -160400117 - MLT1A1 LTR MaLR 0 365 334 3432 141 109 6 chr1 82264241 82264920 -160399433 - Tigger3(Golem) DNA MER2_type -3 3026 2278 685 198 8 0 chr1 82264898 82265019 -160399334 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 797 171 43 30 chr1 82265025 82265189 -160399164 - MLT1A1 LTR MaLR -38 327 162 14715 77 18 2 chr1 82265222 82269781 -160394572 - L1PA7 LINE L1 -8 6146 1524 533 279 138 25 chr1 82269934 82270343 -160394010 - L2 LINE L2 -196 3117 2661 1633 148 9 72 chr1 82271015 82271346 -160393007 + MER44D DNA MER2_type 29 608 -1 1183 181 5 0 chr1 82273620 82273830 -160390523 + L1PA16 LINE L1 5951 6161 -5 447 264 141 27 chr1 82274081 82274380 -160389973 + L1ME4a LINE L1 5560 5892 -229 281 245 104 9 chr1 82274409 82274515 -160389838 + L1ME4a LINE L1 5966 6081 -40 22 35 0 0 chr1 82274563 82274592 -160389761 + AT_rich Low_complexity Low_complexity 1 29 0 613 143 13 39 chr1 82275874 82276028 -160388325 + GA-rich Low_complexity Low_complexity 4 153 0 330 26 0 0 chr1 82276277 82276316 -160388037 + (CAT)n Simple_repeat Simple_repeat 1 39 0 345 335 88 22 chr1 82276368 82276550 -160387803 - MIR SINE MIR -54 208 15 24 32 0 0 chr1 82277423 82277454 -160386899 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr1 82277631 82277654 -160386699 + (T)n Simple_repeat Simple_repeat 1 23 0 1297 214 21 10 chr1 82277932 82278222 -160386131 - LTR40b LTR ERVL -2 460 168 705 267 58 13 chr1 82278359 82278584 -160385769 - MIR SINE MIR -15 247 13 30 45 0 0 chr1 82279663 82279707 -160384646 + AT_rich Low_complexity Low_complexity 1 44 0 1330 193 100 4 chr1 82280312 82280414 -160383939 + AluJb SINE Alu 1 92 -220 198 0 0 0 chr1 82280414 82280436 -160383917 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1330 193 100 4 chr1 82280436 82280613 -160383740 + AluJb SINE Alu 92 307 -5 21 0 0 0 chr1 82280618 82280639 -160383714 + AT_rich Low_complexity Low_complexity 1 21 0 223 176 0 59 chr1 82280719 82280770 -160383583 + GA-rich Low_complexity Low_complexity 1 48 0 23 54 0 0 chr1 82282549 82282586 -160381767 + AT_rich Low_complexity Low_complexity 1 37 0 300 292 17 8 chr1 82282941 82283061 -160381292 + L1ME4a LINE L1 5848 5968 -153 510 286 77 0 chr1 82283254 82283541 -160380812 + L1ME4a LINE L1 5586 5894 -227 21 36 0 0 chr1 82283693 82283721 -160380632 + AT_rich Low_complexity Low_complexity 1 28 0 2399 92 0 0 chr1 82283754 82284057 -160380296 + AluY SINE Alu 1 303 -8 338 277 0 40 chr1 82284701 82284802 -160379551 - MER58 DNA MER1_type -2323 97 1 745 244 21 67 chr1 82285720 82285958 -160378395 + MIR SINE MIR 32 258 -4 3399 133 4 20 chr1 82286934 82287470 -160376883 - MER1A DNA MER1_type 0 527 1 21 0 0 0 chr1 82287675 82287696 -160376657 + AT_rich Low_complexity Low_complexity 1 21 0 641 301 115 40 chr1 82287872 82288247 -160376106 - LTR16A1 LTR ERVL 0 457 89 422 264 61 27 chr1 82290066 82290214 -160374139 + MIR SINE MIR 40 192 -70 325 266 160 12 chr1 82290363 82290532 -160373821 - MIR SINE MIR -1 261 68 276 30 0 0 chr1 82290982 82291015 -160373338 + (TG)n Simple_repeat Simple_repeat 1 33 0 270 246 0 0 chr1 82291200 82291257 -160373096 - L2 LINE L2 0 3313 3257 1668 147 4 0 chr1 82293046 82293318 -160371035 - L1MA6 LINE L1 -4 6296 6024 22 0 0 0 chr1 82294230 82294252 -160370101 + AT_rich Low_complexity Low_complexity 1 22 0 328 133 205 0 chr1 82294422 82294505 -160369848 + L1 LINE L1 4930 5029 -1117 301 200 0 0 chr1 82294499 82294564 -160369789 + L1P LINE L1 4600 4664 -1482 * 320 332 72 30 chr1 82294988 82295223 -160369130 + L1ME LINE L1 4958 5202 -944 422 314 72 16 chr1 82295275 82295585 -160368768 + L1ME LINE L1 5287 5610 -552 1523 112 48 0 chr1 82296040 82296289 -160368064 + L1PA13 LINE L1 5898 6158 -5 21 36 0 0 chr1 82297805 82297833 -160366520 + AT_rich Low_complexity Low_complexity 1 28 0 484 330 119 9 chr1 82298447 82298674 -160365679 + MIR SINE MIR 1 252 -10 472 279 144 50 chr1 82299984 82300185 -160364168 + MIR SINE MIR 9 228 -34 253 241 35 23 chr1 82300185 82300272 -160364081 - L1MCa LINE L1 -4333 2093 2006 14216 136 32 8 chr1 82300309 82302672 -160361681 - Tigger1 DNA MER2_type 0 2418 1 258 216 0 0 chr1 82302680 82302754 -160361599 + (TG)n Simple_repeat Simple_repeat 1 74 0 230 284 21 21 chr1 82302754 82302849 -160361504 + GA-rich Low_complexity Low_complexity 1 95 0 279 373 21 14 chr1 82304274 82304416 -160359937 - MARNA DNA Mariner -170 416 274 226 254 14 0 chr1 82304506 82304577 -160359776 + (TAA)n Simple_repeat Simple_repeat 1 72 0 922 0 18 0 chr1 82304726 82304838 -160359515 + L1HS LINE L1 6042 6155 0 9833 32 1 0 chr1 82304843 82306029 -160358324 - L1P LINE L1 -1812 4334 3148 7905 21 0 0 chr1 82306030 82306974 -160357379 + L1P LINE L1 2202 3145 -3001 6327 87 16 7 chr1 82306974 82307973 -160356380 + L1PA10 LINE L1 5148 6157 -11 627 245 93 40 chr1 82307977 82308143 -160356210 - L1M4 LINE L1 -1782 4364 4176 1003 118 0 12 chr1 82308143 82308312 -160356041 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 627 245 93 40 chr1 82308312 82308423 -160355930 - L1M4 LINE L1 -1970 4176 4072 459 354 35 25 chr1 82308433 82308718 -160355635 + L2 LINE L2 2569 2856 -458 194 258 106 0 chr1 82308760 82308826 -160355527 + MIR SINE MIR 120 192 -70 529 363 78 40 chr1 82308924 82309587 -160354766 + L2 LINE L2 2397 3081 -191 314 251 135 37 chr1 82310570 82310647 -160353706 + MIR SINE MIR 84 152 -110 4737 135 9 9 chr1 82310647 82311455 -160352898 - L1MA4 LINE L1 -9 6291 5484 314 251 135 37 chr1 82311455 82311540 -160352813 + MIR SINE MIR 152 262 0 317 300 45 101 chr1 82311563 82311920 -160352433 - L2 LINE L2 -23 3249 2913 2788 197 4 8 chr1 82312017 82312534 -160351819 - MLT2B2 LTR ERVL 0 515 1 317 320 138 42 chr1 82312555 82312911 -160351442 - L2 LINE L2 -559 2755 2366 299 320 19 19 chr1 82314748 82314851 -160349502 - MIR SINE MIR -152 110 8 240 427 14 14 chr1 82314863 82315006 -160349347 - MIR3 SINE MIR -62 146 4 199 296 57 23 chr1 82315204 82315292 -160349061 - L3 LINE CR1 -684 893 803 1900 104 62 0 chr1 82315332 82315641 -160348712 - L1PA16 LINE L1 -10 6156 5829 1005 129 7 0 chr1 82315641 82315796 -160348557 + L1PA16 LINE L1 5733 5888 -278 473 341 130 22 chr1 82315803 82316079 -160348274 - L2 LINE L2 -25 3247 2942 692 209 104 11 chr1 82316493 82316639 -160347714 - MER3 DNA MER1_type -4 205 37 2024 75 34 0 chr1 82316639 82316904 -160347449 - AluY SINE Alu -16 295 22 692 209 104 11 chr1 82316904 82316939 -160347414 - MER3 DNA MER1_type -172 37 7 23 33 0 0 chr1 82317021 82317051 -160347302 + AT_rich Low_complexity Low_complexity 1 30 0 2111 113 3 3 chr1 82317758 82318059 -160346294 + AluY SINE Alu 1 301 -10 292 282 109 11 chr1 82318207 82318381 -160345972 + L1ME LINE L1 5474 5664 -457 248 343 71 0 chr1 82319138 82319237 -160345116 + MIR SINE MIR 146 251 -11 29 47 0 0 chr1 82319456 82319499 -160344854 + AT_rich Low_complexity Low_complexity 1 43 0 196 146 182 18 chr1 82320514 82320569 -160343784 + MIR SINE MIR 27 90 -118 422 254 127 42 chr1 82321332 82321474 -160342879 + L2 LINE L2 3160 3313 0 2938 117 254 6 chr1 82321664 82322807 -160341546 + pTR5 LTR ERV1 741 2468 0 226 285 146 97 chr1 82323361 82323649 -160340704 - L2 LINE L2 0 3313 3012 507 293 31 31 chr1 82324292 82324472 -160339881 + MER5A DNA MER1_type 1 172 -6 23 0 0 0 chr1 82325508 82325531 -160338822 + AT_rich Low_complexity Low_complexity 1 23 0 181 370 0 0 chr1 82329240 82329286 -160335067 + L2 LINE L2 3154 3199 -73 551 305 23 42 chr1 82329673 82329932 -160334421 - MIR SINE MIR 0 262 9 22 0 0 0 chr1 82329935 82329957 -160334396 + AT_rich Low_complexity Low_complexity 1 22 0 188 321 0 0 chr1 82330245 82330298 -160334055 + MIR SINE MIR 54 106 -102 360 0 0 0 chr1 82331679 82331719 -160332634 + (CA)n Simple_repeat Simple_repeat 1 40 0 183 351 45 18 chr1 82332837 82332948 -160331405 + L2 LINE L2 2373 2486 -828 296 311 91 15 chr1 82333006 82333138 -160331215 + L2 LINE L2 3123 3264 -8 26 50 0 0 chr1 82333710 82333750 -160330603 + AT_rich Low_complexity Low_complexity 1 40 0 192 294 170 39 chr1 82333814 82333967 -160330386 + MIR SINE MIR 90 262 0 562 287 7 0 chr1 82335137 82335287 -160329066 - MER103 DNA DNA -5 161 11 23 33 0 0 chr1 82335917 82335947 -160328406 + AT_rich Low_complexity Low_complexity 1 30 0 596 246 68 16 chr1 82336004 82336176 -160328177 - MIR SINE MIR -23 185 2 262 278 135 23 chr1 82336394 82336527 -160327826 - MIR SINE MIR -111 151 4 312 352 63 7 chr1 82340496 82340638 -160323715 + MIR SINE MIR 44 193 -69 807 325 77 15 chr1 82340880 82341531 -160322822 - L2 LINE L2 -2 3311 2576 1317 236 107 25 chr1 82341884 82342045 -160322308 - L1ME LINE L1 -5576 494 348 1746 212 144 60 chr1 82342045 82342648 -160321705 + MLT1E1 LTR MaLR 1 654 0 1317 236 107 25 chr1 82342648 82342758 -160321595 - L1ME LINE L1 -5722 348 248 288 0 0 0 chr1 82342758 82342790 -160321563 + (GA)n Simple_repeat Simple_repeat 2 33 0 1317 236 107 25 chr1 82342790 82342957 -160321396 - L1ME LINE L1 -5822 248 19 2977 250 161 75 chr1 82343071 82344915 -160319438 - L2 LINE L2 -865 2449 360 234 0 0 0 chr1 82346607 82346633 -160317720 + (A)n Simple_repeat Simple_repeat 1 26 0 857 325 150 36 chr1 82347174 82347772 -160316581 + L3 LINE CR1 562 1245 -332 2166 86 0 68 chr1 82347772 82348096 -160316257 - AluSc SINE Alu -7 302 1 857 325 150 36 chr1 82348096 82348165 -160316188 + L3 LINE CR1 1245 1305 -272 893 168 18 0 chr1 82349187 82349354 -160314999 + L1MB5 LINE L1 5607 5776 -398 1154 225 56 42 chr1 82349354 82349709 -160314644 - MLT1A2 LTR MaLR -14 360 1 948 222 36 5 chr1 82349709 82349930 -160314423 + L1MB5 LINE L1 5939 6166 -8 296 305 55 23 chr1 82350389 82350517 -160313836 - MLT1H LTR MaLR -379 170 39 234 240 0 0 chr1 82350717 82350767 -160313586 + (CA)n Simple_repeat Simple_repeat 2 51 0 446 258 152 7 chr1 82351210 82351361 -160312992 + MIR SINE MIR 11 183 -79 259 316 41 41 chr1 82351897 82351995 -160312358 + L2 LINE L2 3215 3312 -1 558 213 156 31 chr1 82352121 82352281 -160312072 - MIR SINE MIR -36 226 47 924 158 67 0 chr1 82352562 82352726 -160311627 + MER5B DNA MER1_type 1 175 -3 24 32 0 0 chr1 82353163 82353194 -160311159 + AT_rich Low_complexity Low_complexity 1 31 0 362 176 12 0 chr1 82354104 82354189 -160310164 + (CA)n Simple_repeat Simple_repeat 1 86 0 318 316 59 6 chr1 82354505 82354539 -160309814 + MER20B DNA MER1_type 26 57 -162 207 0 0 0 chr1 82354539 82354562 -160309791 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 318 316 59 6 chr1 82354562 82354688 -160309665 + MER20B DNA MER1_type 57 198 -21 28 0 0 0 chr1 82355084 82355112 -160309241 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr1 82355402 82355431 -160308922 + AT_rich Low_complexity Low_complexity 1 29 0 1109 165 80 25 chr1 82355785 82355985 -160308368 - AluJb SINE Alu -101 211 1 1192 149 14 5 chr1 82355990 82356198 -160308155 + Tigger7 DNA MER2_type 2272 2481 -6 515 288 30 1 chr1 82356207 82356413 -160307940 - L1M4 LINE L1 -1493 4653 4442 34 24 0 0 chr1 82356598 82356639 -160307714 + AT_rich Low_complexity Low_complexity 1 41 0 2376 25 0 11 chr1 82356910 82357214 -160307139 + AluYa5 SINE Alu 37 337 0 854 287 26 48 chr1 82357258 82357880 -160306473 - L1MEd LINE L1 -4751 1559 906 308 43 22 0 chr1 82358016 82358062 -160306291 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2006 112 0 7 chr1 82358065 82358341 -160306012 - AluSg SINE Alu -36 274 1 278 321 76 15 chr1 82358530 82358661 -160305692 - L1MEd LINE L1 -5735 384 246 434 339 17 6 chr1 82358689 82358866 -160305487 + L2 LINE L2 3122 3300 -13 32 0 0 0 chr1 82359839 82359871 -160304482 + AT_rich Low_complexity Low_complexity 1 32 0 541 284 14 21 chr1 82362841 82362982 -160301371 - MIR SINE MIR -121 141 2 318 301 97 0 chr1 82363005 82363118 -160301235 + MIR3 SINE MIR 65 188 -20 * 459 226 0 0 chr1 82363106 82363199 -160301154 + MER5A DNA MER1_type 10 102 -87 348 287 74 0 chr1 82363985 82364093 -160300260 + L2 LINE L2 3157 3272 0 256 268 98 0 chr1 82364412 82364494 -160299859 - L2 LINE L2 -5 3267 3178 999 33 0 0 chr1 82364684 82364805 -160299548 + L1PA5 LINE L1 6026 6146 -8 462 322 158 5 chr1 82364832 82365034 -160299319 - MIR SINE MIR -5 257 25 310 310 212 0 chr1 82365280 82365464 -160298889 + MIR SINE MIR 3 225 -37 1540 173 99 3 chr1 82366271 82366555 -160297798 - AluJb SINE Alu -1 311 1 2397 75 0 7 chr1 82366747 82367055 -160297298 + AluY SINE Alu 1 306 -5 2262 99 0 20 chr1 82367413 82367716 -160296637 - AluSq SINE Alu -16 297 1 1708 124 0 20 chr1 82367718 82367967 -160296386 - AluSp SINE Alu -16 297 54 463 363 133 22 chr1 82368080 82368480 -160295873 - L2 LINE L2 -4 3268 2825 243 338 0 14 chr1 82369196 82369270 -160295083 + L2 LINE L2 3240 3312 -1 382 267 220 16 chr1 82371028 82371219 -160293134 - MIR SINE MIR -13 249 20 1942 193 58 24 chr1 82371297 82371749 -160292604 + MLT1C LTR MaLR 1 467 0 181 328 147 43 chr1 82373003 82373235 -160291118 - L2 LINE L2 -397 2917 2662 243 296 185 32 chr1 82374070 82374286 -160290067 - MIR SINE MIR 0 262 14 892 193 50 6 chr1 82374291 82374472 -160289881 - MER5A DNA MER1_type 0 189 1 215 184 61 0 chr1 82375355 82375404 -160288949 + T-rich Low_complexity Low_complexity 2 53 0 5932 6 0 0 chr1 82375404 82376094 -160288259 - L1HS LINE L1 0 6155 5466 1398 114 5 0 chr1 82376529 82376739 -160287614 - L1PB1 LINE L1 -1 6150 5940 964 262 19 19 chr1 82377693 82377949 -160286404 + MIR SINE MIR 4 259 -3 237 196 0 0 chr1 82378021 82378072 -160286281 + (TA)n Simple_repeat Simple_repeat 2 52 0 249 340 130 10 chr1 82378118 82378218 -160286135 - L2 LINE L2 -1 3271 3160 192 179 0 0 chr1 82378278 82378317 -160286036 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 228 67 0 0 chr1 82379175 82379205 -160285148 + (GA)n Simple_repeat Simple_repeat 1 30 0 389 277 81 37 chr1 82379564 82379754 -160284599 + MIR SINE MIR 9 206 -56 185 243 0 122 chr1 82380158 82380232 -160284121 + L2 LINE L2 3238 3302 -11 1501 83 10 0 chr1 82380299 82380504 -160283849 - L1PA7 LINE L1 0 6154 5948 380 237 153 34 chr1 82381137 82381255 -160283098 - L2 LINE L2 0 3313 3182 418 275 53 12 chr1 82381304 82381475 -160282878 - L2 LINE L2 -483 2831 2654 771 290 12 24 chr1 82381761 82382009 -160282344 - MIR SINE MIR -16 246 2 608 301 81 24 chr1 82382926 82383172 -160281181 + MIR SINE MIR 3 262 0 1260 185 32 0 chr1 82383347 82383563 -160280790 + MER58A DNA MER1_type 2 224 0 448 346 70 21 chr1 82383994 82384280 -160280073 - L2 LINE L2 -339 2975 2676 2219 230 114 18 chr1 82385049 82386246 -160278107 + L1MC4 LINE L1 6446 7910 -132 825 221 0 0 chr1 82386490 82386648 -160277705 - AluJb SINE Alu -14 298 141 258 339 0 0 chr1 82386681 82386746 -160277607 + L2 LINE L2 3168 3232 -40 330 225 146 0 chr1 82386853 82386942 -160277411 + MIR SINE MIR 43 144 -118 417 323 31 8 chr1 82387066 82387196 -160277157 + MIR3 SINE MIR 30 162 -46 1728 43 0 0 chr1 82389001 82389209 -160275144 - L1PA3 LINE L1 -3 6152 5945 5687 23 6 0 chr1 82389209 82390397 -160273956 + L1PA3 LINE L1 4762 5953 -202 401 324 19 21 chr1 82390410 82390613 -160273740 + MIR3 SINE MIR 2 197 -65 1694 167 21 3 chr1 82391729 82392016 -160272337 + AluSg SINE Alu 12 303 -7 390 268 45 71 chr1 82392016 82392214 -160272139 - L3 LINE CR1 -7 1570 1378 475 366 50 43 chr1 82392322 82392743 -160271610 - L3 LINE CR1 -1034 543 120 26 82 0 0 chr1 82392944 82393005 -160271348 + AT_rich Low_complexity Low_complexity 1 61 0 26 0 0 0 chr1 82394076 82394102 -160270251 + AT_rich Low_complexity Low_complexity 1 26 0 225 333 70 31 chr1 82394123 82394252 -160270101 - L2 LINE L2 -36 3236 3103 879 276 50 4 chr1 82394370 82394609 -160269744 - MIR SINE MIR -11 251 2 1230 302 73 63 chr1 82394927 82395859 -160268494 - L2 LINE L2 -9 3304 2355 277 336 71 21 chr1 82396128 82396268 -160268085 + MIR SINE MIR 11 157 -105 24 32 0 0 chr1 82396334 82396365 -160267988 + AT_rich Low_complexity Low_complexity 1 31 0 340 259 42 87 chr1 82396452 82396581 -160267772 - MIR3 SINE MIR -40 168 44 22 56 0 0 chr1 82396950 82396986 -160267367 + AT_rich Low_complexity Low_complexity 1 36 0 333 247 0 0 chr1 82397021 82397102 -160267251 + (TG)n Simple_repeat Simple_repeat 2 82 0 22 0 0 0 chr1 82397123 82397145 -160267208 + AT_rich Low_complexity Low_complexity 1 22 0 2260 108 7 3 chr1 82399556 82399893 -160264460 - AluSc SINE Alu 0 340 3 627 310 118 4 chr1 82399923 82400152 -160264201 - MIR SINE MIR -4 258 4 24 32 0 0 chr1 82400730 82400761 -160263592 + AT_rich Low_complexity Low_complexity 1 31 0 610 134 126 17 chr1 82401458 82401577 -160262776 - MER20 DNA MER1_type 0 219 88 2016 175 123 19 chr1 82401577 82402041 -160262312 + MLT2B1 LTR ERVL 1 512 -8 456 200 0 0 chr1 82402049 82402134 -160262219 - MER20 DNA MER1_type -133 86 2 189 121 0 0 chr1 82403672 82403705 -160260648 + (TC)n Simple_repeat Simple_repeat 2 34 0 463 231 19 90 chr1 82403797 82403900 -160260453 + MIR SINE MIR 60 151 -111 1496 174 74 22 chr1 82403900 82404197 -160260156 + AluJb SINE Alu 1 311 0 463 231 19 90 chr1 82404197 82404248 -160260105 + MIR SINE MIR 151 204 -58 2021 153 0 0 chr1 82404274 82404575 -160259778 - AluJb SINE Alu -11 301 1 270 0 0 0 chr1 82404997 82405027 -160259326 + (TTA)n Simple_repeat Simple_repeat 2 31 0 896 213 11 0 chr1 82406545 82406719 -160257634 - MER5A DNA MER1_type -1 188 13 781 259 71 25 chr1 82406730 82406969 -160257384 + MIR SINE MIR 9 258 -4 195 215 0 0 chr1 82407788 82407853 -160256500 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 2131 110 0 22 chr1 82408653 82408970 -160255383 + AluSx SINE Alu 3 312 0 24 32 0 0 chr1 82409199 82409230 -160255123 + AT_rich Low_complexity Low_complexity 1 31 0 558 232 56 8 chr1 82410119 82410244 -160254109 - FLAM_A SINE Alu -2 131 1 23 0 0 0 chr1 82410268 82410291 -160254062 + AT_rich Low_complexity Low_complexity 1 23 0 1951 98 19 35 chr1 82510758 82511074 -160153279 + AluY SINE Alu 1 311 0 186 336 52 9 chr1 82513254 82513370 -160150983 + MIR SINE MIR 112 232 -30 3728 28 0 0 chr1 82513699 82514128 -160150225 + L1P LINE L1 4075 4503 -1643 921 221 20 36 chr1 82514229 82514478 -160149875 + MER74B LTR ERVL 304 548 -74 609 174 73 0 chr1 82515250 82515359 -160148994 + FLAM_C SINE Alu 2 118 -25 1578 155 19 70 chr1 82515845 82516161 -160148192 - AluJo SINE Alu -12 300 1 2083 118 3 3 chr1 82516732 82517019 -160147334 - AluSx SINE Alu -25 287 1 2136 117 56 15 chr1 82517860 82518184 -160146169 - MER1B DNA MER1_type 0 337 1 210 71 0 0 chr1 82518316 82518344 -160146009 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 2754 86 35 5 chr1 82518883 82519311 -160145042 - L1P LINE L1 -784 5362 4922 3337 140 17 0 chr1 82519312 82519841 -160144512 - MSTA-int LTR MaLR -1113 538 1 2797 137 14 5 chr1 82519841 82520265 -160144088 - MSTA LTR MaLR 0 428 1 3997 166 30 78 chr1 82520271 82521109 -160143244 - L1M1 LINE L1 -6386 1179 382 1986 128 0 0 chr1 82522587 82522877 -160141476 + AluSx SINE Alu 4 293 -19 1641 165 216 3 chr1 82523946 82524297 -160140056 - MSTC LTR MaLR -2 426 1 2040 130 3 0 chr1 82525344 82525644 -160138709 - AluSx SINE Alu -11 301 1 24 0 0 0 chr1 82525713 82525737 -160138616 + AT_rich Low_complexity Low_complexity 1 24 0 836 138 0 23 chr1 82525741 82525871 -160138482 - FLAM_C SINE Alu -16 127 1 342 256 58 0 chr1 82525876 82525962 -160138391 + L2 LINE L2 3223 3313 0 1278 66 98 22 chr1 82526198 82526381 -160137972 + AluY SINE Alu 1 197 -114 21 36 0 0 chr1 82526903 82526931 -160137422 + GC_rich Low_complexity Low_complexity 1 28 0 527 218 67 42 chr1 82527047 82527212 -160137141 - MER93a LTR ERV1 0 402 234 399 87 261 0 chr1 82527246 82527315 -160137038 - FLAM_C SINE Alu -22 111 25 1965 179 75 34 chr1 82527550 82527991 -160136362 + LTR2B LTR ERV1 32 490 0 1980 118 3 3 chr1 82528623 82528912 -160135441 - AluSg SINE Alu -21 289 1 23 0 0 0 chr1 82529009 82529032 -160135321 + AT_rich Low_complexity Low_complexity 1 23 0 2199 89 3 3 chr1 82529347 82529640 -160134713 - AluSp SINE Alu -20 293 1 1893 145 0 3 chr1 82529726 82530030 -160134323 - AluSg SINE Alu -7 303 1 180 0 0 0 chr1 82530031 82530051 -160134302 + (T)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr1 82530150 82530170 -160134183 + (TA)n Simple_repeat Simple_repeat 2 21 0 184 246 82 0 chr1 82534039 82534100 -160130253 + L2 LINE L2 2725 2790 -524 587 274 80 19 chr1 82535235 82535447 -160128906 - MER58B DNA MER1_type -23 318 94 1545 196 54 14 chr1 82536259 82536592 -160127761 + L1MA9 LINE L1 5744 6093 -219 1064 250 24 43 chr1 82536592 82536964 -160127389 - MLT1A1 LTR MaLR 0 365 1 1545 196 54 14 chr1 82536964 82536982 -160127371 + L1MA9 LINE L1 6093 6109 -203 25 65 0 0 chr1 82537043 82537089 -160127264 + AT_rich Low_complexity Low_complexity 1 46 0 344 276 85 70 chr1 82537319 82537518 -160126835 + L1ME3A LINE L1 4981 5182 -964 29 43 0 43 chr1 82537656 82537725 -160126628 + AT_rich Low_complexity Low_complexity 1 66 0 870 274 87 48 chr1 82537786 82538009 -160126344 + L1ME3A LINE L1 5258 5471 -699 2548 37 0 0 chr1 82538009 82538307 -160126046 + AluY SINE Alu 1 298 -13 870 274 87 48 chr1 82538307 82538829 -160125524 + L1ME3A LINE L1 5471 6032 -138 235 261 17 17 chr1 82539099 82539218 -160125135 + A-rich Low_complexity Low_complexity 1 119 0 1986 103 52 3 chr1 82540096 82540387 -160123966 + AluSg SINE Alu 1 305 -5 7656 147 44 15 chr1 82540389 82541855 -160122498 + L1P3 LINE L1 65 1574 -4734 2107 183 71 23 chr1 82541875 82542313 -160122040 + LTR2B LTR ERV1 32 490 0 1916 195 0 73 chr1 82542317 82542834 -160121519 + L1P3 LINE L1 1567 2045 -4416 998 92 8 0 chr1 82543221 82543352 -160121001 - AluSg SINE Alu -176 134 3 274 153 0 34 chr1 82543508 82543567 -160120786 + L1MB8 LINE L1 6122 6178 0 * 2844 174 51 68 chr1 82543559 82543661 -160120692 + L1MB7 LINE L1 5425 5527 -657 1517 107 54 0 chr1 82543661 82543903 -160120450 + AluSg SINE Alu 56 310 0 2844 174 51 68 chr1 82543903 82544233 -160120120 + L1MB7 LINE L1 5527 5861 -323 1707 121 17 34 chr1 82544233 82544530 -160119823 + AluJb SINE Alu 1 292 -20 2844 174 51 68 chr1 82544530 82544835 -160119518 + L1MB7 LINE L1 5861 6113 -71 2119 103 3 0 chr1 82544835 82545127 -160119226 + AluSg SINE Alu 1 293 -17 2844 174 51 68 chr1 82545127 82545189 -160119164 + L1MB7 LINE L1 6113 6175 -9 1519 23 0 0 chr1 82545208 82545379 -160118974 + AluY SINE Alu 1 171 -140 387 182 15 0 chr1 82545379 82545445 -160118908 - MLT1H LTR MaLR -474 75 9 246 244 82 59 chr1 82545451 82545586 -160118767 - MIR3 SINE MIR -62 146 9 2365 60 3 0 chr1 82545841 82546139 -160118214 + AluY SINE Alu 1 299 -12 306 277 24 22 chr1 82546190 82546359 -160117994 - MLT1J LTR MaLR -122 493 240 893 151 0 0 chr1 82546746 82546892 -160117461 - AluSg/x SINE Alu -13 299 154 2512 31 3 0 chr1 82547003 82547297 -160117056 - AluY SINE Alu -16 295 1 2486 138 48 5 chr1 82547317 82547714 -160116639 - MER21A-int LTR ERV1 -3062 3696 3283 1387 122 5 0 chr1 82547706 82547902 -160116451 - MER21A-int LTR ERV1 -3994 197 1 * 2956 115 66 38 chr1 82547902 82548405 -160115948 - MER21A LTR ERV1 0 931 415 388 234 58 44 chr1 82548406 82548543 -160115810 - MLT1C LTR MaLR -219 248 110 1016 195 0 23 chr1 82548545 82548760 -160115593 - AluJb SINE Alu -7 305 96 9497 194 45 30 chr1 82548861 82550723 -160113630 + L1P LINE L1 2944 4850 -1296 2332 71 0 0 chr1 82550723 82551020 -160113333 - AluY SINE Alu -14 297 1 9497 194 45 30 chr1 82551020 82551520 -160112833 + L1P LINE L1 4850 5341 -805 27 49 0 0 chr1 82552154 82552195 -160112158 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr1 82552254 82552279 -160112074 + AT_rich Low_complexity Low_complexity 1 25 0 1714 189 0 3 chr1 82552569 82552870 -160111483 - AluJo SINE Alu -7 305 6 22 0 0 0 chr1 82553209 82553231 -160111122 + AT_rich Low_complexity Low_complexity 1 22 0 2060 93 6 6 chr1 82553961 82554273 -160110080 - AluSp SINE Alu -1 312 1 1178 184 70 121 chr1 82554374 82554804 -160109549 - L1MA9 LINE L1 -10 6302 5895 356 225 144 93 chr1 82554812 82554998 -160109355 + L1MC4 LINE L1 6773 6975 -1067 1982 132 0 28 chr1 82554998 82555317 -160109036 - AluSx SINE Alu -2 310 1 356 225 144 93 chr1 82555317 82555366 -160108987 + L1MC4 LINE L1 6975 7020 -1022 613 213 41 0 chr1 82555368 82555490 -160108863 + FLAM_A SINE Alu 1 127 -6 1509 260 50 65 chr1 82555775 82556440 -160107913 + L1M3b LINE L1 853 1507 -4774 251 220 85 0 chr1 82556615 82556674 -160107679 - L1PB4 LINE L1 -48 6108 6045 * 558 183 0 0 chr1 82556672 82556776 -160107577 - L1MA9 LINE L1 -801 5490 5387 * 2882 256 75 15 chr1 82556761 82557366 -160106987 - L1MB2 LINE L1 -42 6129 5562 1915 141 0 3 chr1 82557366 82557657 -160106696 - AluSx SINE Alu -22 290 1 2882 256 75 15 chr1 82557657 82558401 -160105952 - L1MB2 LINE L1 -609 5562 4693 453 225 108 39 chr1 82558419 82558548 -160105805 - FLAM_C SINE Alu -1 142 5 389 190 98 92 chr1 82558554 82558695 -160105658 - L1MB2 LINE L1 -1443 4703 4559 2453 56 0 7 chr1 82558695 82558999 -160105354 - AluY SINE Alu -9 302 1 389 190 98 92 chr1 82558999 82559041 -160105312 - L1MB2 LINE L1 -1587 4559 4519 692 245 112 13 chr1 82559062 82559376 -160104977 - L1MB2 LINE L1 -3324 2822 2478 233 216 0 14 chr1 82559395 82559469 -160104884 + (TA)n Simple_repeat Simple_repeat 1 73 0 797 248 30 35 chr1 82559784 82559986 -160104367 + MIR SINE MIR 12 212 -50 27 0 0 0 chr1 82560253 82560280 -160104073 + AT_rich Low_complexity Low_complexity 1 27 0 824 188 0 0 chr1 82560560 82560693 -160103660 + FLAM_C SINE Alu 1 133 0 180 264 19 19 chr1 82560727 82560780 -160103573 + L2 LINE L2 3201 3253 -19 888 284 31 16 chr1 82560860 82561117 -160103236 + MIR SINE MIR 2 262 0 2016 121 16 3 chr1 82561236 82561542 -160102811 + AluSx SINE Alu 1 310 -2 2382 48 3 0 chr1 82561685 82561974 -160102379 + AluSx SINE Alu 9 298 -14 493 185 134 0 chr1 82562263 82562382 -160101971 + MIR SINE MIR 82 216 -46 504 265 34 0 chr1 82562653 82562770 -160101583 - MIR SINE MIR -22 240 120 213 196 54 11 chr1 82563250 82563342 -160101011 + (TA)n Simple_repeat Simple_repeat 1 96 0 806 165 23 0 chr1 82563342 82563475 -160100878 - AluJo SINE Alu -176 136 1 2440 30 7 3 chr1 82563583 82563878 -160100475 - AluY SINE Alu -4 307 12 1725 138 65 21 chr1 82564374 82564665 -160099688 - AluSq SINE Alu -7 306 3 1222 93 0 0 chr1 82565115 82565287 -160099066 - AluSq SINE Alu -1 312 141 1881 149 0 13 chr1 82565433 82565741 -160098612 + AluJb SINE Alu 1 304 -8 267 103 0 0 chr1 82565820 82565859 -160098494 + (A)n Simple_repeat Simple_repeat 1 39 0 562 119 8 43 chr1 82566059 82566181 -160098172 + L1MA7 LINE L1 5737 5844 -447 489 288 0 0 chr1 82566286 82566397 -160097956 - L2 LINE L2 -308 3005 2895 718 284 91 12 chr1 82566400 82566643 -160097710 + MIR SINE MIR 1 262 0 1400 195 3 28 chr1 82567629 82567916 -160096437 - AluJo SINE Alu -32 280 1 1794 122 9 55 chr1 82567918 82568246 -160096107 - AluSq SINE Alu 0 313 1 2034 118 0 13 chr1 82568310 82568614 -160095739 + AluSx SINE Alu 1 300 -12 1189 266 70 62 chr1 82568629 82569174 -160095179 - L2 LINE L2 -2 3311 2745 2018 79 15 0 chr1 82569174 82569439 -160094914 - AluSg SINE Alu -41 269 1 1189 266 70 62 chr1 82569439 82569544 -160094809 - L2 LINE L2 -568 2745 2642 442 246 130 0 chr1 82570302 82570440 -160093913 - LTR38B LTR ERV1 -153 457 302 264 180 0 0 chr1 82570464 82570514 -160093839 + LTR38B LTR ERV1 9 58 -552 1878 140 0 3 chr1 82570555 82570893 -160093460 - AluSx SINE Alu 0 337 1 701 208 64 102 chr1 82571005 82571270 -160093083 - LTR38B LTR ERV1 -346 264 10 1765 162 7 3 chr1 82571299 82571601 -160092752 + AluJb SINE Alu 3 305 -7 470 301 137 0 chr1 82573127 82573310 -160091043 - MIR SINE MIR -35 227 20 770 110 0 0 chr1 82573354 82573454 -160090899 - MER48 LTR ERV1 0 387 288 2357 98 7 0 chr1 82573700 82574006 -160090347 - AluSq SINE Alu -5 308 1 441 0 0 0 chr1 82574033 82574082 -160090271 + (CA)n Simple_repeat Simple_repeat 2 50 0 2510 78 3 0 chr1 82577212 82577520 -160086833 + AluSp SINE Alu 1 309 -4 377 254 215 0 chr1 82578150 82578280 -160086073 + MER5A DNA MER1_type 10 167 -22 22 0 0 0 chr1 82578414 82578436 -160085917 + AT_rich Low_complexity Low_complexity 1 22 0 2245 124 0 3 chr1 82579134 82579441 -160084912 - AluSx SINE Alu -6 306 1 2091 148 14 12 chr1 82582496 82582841 -160081512 - MER7A DNA MER2_type -2 344 1 212 270 27 14 chr1 82582843 82582917 -160081436 + CT-rich Low_complexity Low_complexity 1 75 0 2277 70 3 40 chr1 82583648 82583948 -160080405 - AluSc SINE Alu -20 289 1 1630 121 136 19 chr1 82585007 82585272 -160079081 - AluJb SINE Alu -16 296 1 3524 116 9 15 chr1 82585399 82585932 -160078421 - MER4B LTR ERV1 -80 530 1 1106 149 12 0 chr1 82585932 82586100 -160078253 - MER4B-int LTR ERV1 -88 4103 3934 2517 63 3 0 chr1 82586116 82586419 -160077934 - AluY SINE Alu -7 304 1 766 168 14 28 chr1 82586421 82586564 -160077789 - AluSq/x SINE Alu -170 142 2 1269 152 22 35 chr1 82586565 82586796 -160077557 - MER4B-int LTR ERV1 -302 3889 3662 1746 73 14 0 chr1 82586797 82587016 -160077337 - AluSg/x SINE Alu -12 298 77 2402 83 0 0 chr1 82587018 82587320 -160077033 - AluY SINE Alu -9 302 1 548 134 0 0 chr1 82587320 82587402 -160076951 - AluSc SINE Alu -225 84 3 199 260 144 0 chr1 82587586 82587690 -160076663 - MIR SINE MIR -27 235 117 180 0 0 0 chr1 82587722 82587742 -160076611 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1413 173 26 97 chr1 82587988 82588369 -160075984 + MLT1A1 LTR MaLR 1 354 -11 350 198 0 33 chr1 82588445 82588536 -160075817 - MIR SINE MIR -56 206 119 404 179 0 12 chr1 82589273 82589357 -160074996 + L1M4 LINE L1 4455 4537 -1609 2573 219 36 0 chr1 82590541 82591116 -160073237 + L1P LINE L1 1812 2407 -3739 1783 128 160 75 chr1 82591116 82591492 -160072861 - MER4A LTR ERV1 0 664 257 329 154 0 0 chr1 82591488 82591540 -160072813 - MER4A LTR ERV1 -566 98 47 * 558 260 98 17 chr1 82591545 82591762 -160072591 - L1MCa LINE L1 -6098 328 89 6495 67 14 0 chr1 82591762 82592861 -160071492 - L1PA8A LINE L1 0 6131 5042 558 260 98 17 chr1 82592861 82592878 -160071475 - L1MCa LINE L1 -6337 89 75 981 130 0 0 chr1 82592881 82593012 -160071341 - AluSg SINE Alu -179 131 1 2418 153 18 0 chr1 82593014 82593413 -160070940 - L1PA8A LINE L1 -1092 5054 4649 366 133 17 0 chr1 82593413 82593473 -160070880 - Alu SINE Alu -6 296 236 266 254 71 56 chr1 82594413 82594539 -160069814 - MLT1L LTR MaLR -346 269 142 2169 106 7 0 chr1 82594967 82595251 -160069102 - AluSx SINE Alu -17 295 10 2182 168 23 2 chr1 82595298 82595692 -160068661 - L1MB7 LINE L1 -8 6176 5775 1532 90 9 52 chr1 82595802 82596035 -160068318 + AluSg/x SINE Alu 66 288 -24 198 0 0 0 chr1 82596137 82596159 -160068194 + (T)n Simple_repeat Simple_repeat 1 22 0 1963 128 35 14 chr1 82596257 82596411 -160067942 - AluSg SINE Alu -15 295 131 2311 103 0 3 chr1 82596411 82596713 -160067640 - AluSq SINE Alu -12 301 1 1963 128 35 14 chr1 82596713 82596847 -160067506 - AluSg SINE Alu -179 131 1 300 223 100 15 chr1 82596847 82596977 -160067376 + MIR SINE MIR 122 262 0 1668 98 136 8 chr1 82597278 82597543 -160066810 - AluSg SINE Alu -1 299 1 299 233 0 0 chr1 82597602 82597662 -160066691 - MLT1K LTR MaLR -8 580 521 283 276 32 144 chr1 82597688 82597872 -160066481 - MLT1K LTR MaLR -179 409 259 2127 71 35 21 chr1 82597872 82597992 -160066361 + AluSc SINE Alu 1 118 -191 180 0 0 0 chr1 82597992 82598012 -160066341 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2127 71 35 21 chr1 82598012 82598173 -160066180 + AluSc SINE Alu 118 286 -23 283 276 32 144 chr1 82598173 82598238 -160066115 - MLT1K LTR MaLR -329 259 188 855 152 23 8 chr1 82599762 82599894 -160064459 + AluSq/x SINE Alu 1 134 -179 229 272 111 0 chr1 82599935 82600016 -160064337 + MIR3 SINE MIR 112 201 -7 2081 122 0 7 chr1 82600062 82600357 -160063996 + AluSx SINE Alu 1 293 -19 2145 113 20 0 chr1 82600808 82601100 -160063253 - AluSx SINE Alu -14 298 1 457 292 56 0 chr1 82601610 82601771 -160062582 - MIR3 SINE MIR -2 206 37 523 277 111 8 chr1 82601960 82602195 -160062158 + L2 LINE L2 2804 3062 -251 1694 167 21 3 chr1 82702681 82702968 -159961385 + AluSg SINE Alu 12 303 -7 390 268 45 71 chr1 82702968 82703166 -159961187 - L3 LINE CR1 -7 1570 1378 475 366 50 43 chr1 82703274 82703695 -159960658 - L3 LINE CR1 -1034 543 120 26 82 0 0 chr1 82703896 82703957 -159960396 + AT_rich Low_complexity Low_complexity 1 61 0 26 0 0 0 chr1 82705028 82705054 -159959299 + AT_rich Low_complexity Low_complexity 1 26 0 225 333 70 31 chr1 82705075 82705204 -159959149 - L2 LINE L2 -36 3236 3103 879 276 50 4 chr1 82705322 82705561 -159958792 - MIR SINE MIR -11 251 2 1230 302 73 63 chr1 82705879 82706811 -159957542 - L2 LINE L2 -9 3304 2355 277 336 71 21 chr1 82707080 82707220 -159957133 + MIR SINE MIR 11 157 -105 24 32 0 0 chr1 82707286 82707317 -159957036 + AT_rich Low_complexity Low_complexity 1 31 0 340 259 42 87 chr1 82707404 82707533 -159956820 - MIR3 SINE MIR -40 168 44 22 56 0 0 chr1 82707902 82707938 -159956415 + AT_rich Low_complexity Low_complexity 1 36 0 333 247 0 0 chr1 82707973 82708054 -159956299 + (TG)n Simple_repeat Simple_repeat 2 82 0 22 0 0 0 chr1 82708075 82708097 -159956256 + AT_rich Low_complexity Low_complexity 1 22 0 2286 102 7 3 chr1 82710508 82710845 -159953508 - AluSc SINE Alu 0 340 3 627 310 118 4 chr1 82710875 82711104 -159953249 - MIR SINE MIR -4 258 4 24 32 0 0 chr1 82711682 82711713 -159952640 + AT_rich Low_complexity Low_complexity 1 31 0 610 134 126 17 chr1 82712410 82712529 -159951824 - MER20 DNA MER1_type 0 219 88 2016 175 123 19 chr1 82712529 82712993 -159951360 + MLT2B1 LTR ERVL 1 512 -8 456 200 0 0 chr1 82713001 82713086 -159951267 - MER20 DNA MER1_type -133 86 2 189 121 0 0 chr1 82714624 82714657 -159949696 + (TC)n Simple_repeat Simple_repeat 2 34 0 463 231 19 90 chr1 82714749 82714852 -159949501 + MIR SINE MIR 60 151 -111 1496 174 74 22 chr1 82714852 82715149 -159949204 + AluJb SINE Alu 1 311 0 463 231 19 90 chr1 82715149 82715200 -159949153 + MIR SINE MIR 151 204 -58 2021 153 0 0 chr1 82715226 82715527 -159948826 - AluJb SINE Alu -11 301 1 270 0 0 0 chr1 82715949 82715979 -159948374 + (TTA)n Simple_repeat Simple_repeat 2 31 0 896 213 11 0 chr1 82717497 82717671 -159946682 - MER5A DNA MER1_type -1 188 13 781 259 71 25 chr1 82717682 82717921 -159946432 + MIR SINE MIR 9 258 -4 195 215 0 0 chr1 82718740 82718805 -159945548 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 2131 110 0 22 chr1 82719605 82719922 -159944431 + AluSx SINE Alu 3 312 0 24 32 0 0 chr1 82720151 82720182 -159944171 + AT_rich Low_complexity Low_complexity 1 31 0 558 232 56 8 chr1 82721071 82721196 -159943157 - FLAM_A SINE Alu -2 131 1 409 244 58 13 chr1 82721207 82721363 -159942990 - L1MD2 LINE L1 -1 6358 6196 497 200 0 0 chr1 82721364 82721459 -159942894 + MLT1A1 LTR MaLR 2 96 -269 14681 77 2 2 chr1 82721493 82726051 -159938302 + L1PA7 LINE L1 1524 6146 -8 797 171 43 30 chr1 82726084 82726248 -159938105 + MLT1A1 LTR MaLR 162 327 -38 685 198 8 0 chr1 82726254 82726375 -159937978 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 3432 141 109 6 chr1 82726353 82727032 -159937321 + Tigger3(Golem) DNA MER2_type 2278 3026 -3 236 94 0 0 chr1 82727037 82727069 -159937284 + MLT1A1 LTR MaLR 343 374 0 24 0 0 0 chr1 82727167 82727191 -159937162 + AT_rich Low_complexity Low_complexity 1 24 0 2199 126 0 7 chr1 82728192 82728502 -159935851 + AluSx SINE Alu 3 310 -2 276 289 41 0 chr1 82728520 82728641 -159935712 + L1MEd LINE L1 919 1044 -5075 566 196 163 0 chr1 82729552 82729705 -159934648 - MER5B DNA MER1_type 0 178 1 657 279 34 0 chr1 82729762 82729941 -159934412 + MER5A DNA MER1_type 5 189 0 527 255 67 0 chr1 82729948 82730097 -159934256 + MIR SINE MIR 34 192 -70 224 298 19 58 chr1 82730236 82730340 -159934013 + MER5B DNA MER1_type 1 100 -78 226 219 0 0 chr1 82730559 82730600 -159933753 + (TG)n Simple_repeat Simple_repeat 1 41 0 259 294 77 63 chr1 82730919 82731062 -159933291 + MIR3 SINE MIR 53 197 -11 485 220 23 38 chr1 82731196 82731328 -159933025 - L2 LINE L2 0 3313 3184 892 214 26 57 chr1 82731683 82731912 -159932441 + MER58A DNA MER1_type 2 223 -1 2004 131 136 16 chr1 82731958 82732340 -159932013 - MSTA LTR MaLR 0 428 1 711 258 47 4 chr1 82732600 82732833 -159931520 - Charlie2 DNA MER1_type -1 2861 2619 671 274 101 28 chr1 82732932 82733249 -159931104 + LTR16A LTR ERVL 111 450 0 * 2529 213 56 25 chr1 82733249 82733974 -159930379 - Charlie2 DNA MER1_type -239 2623 1876 370 283 212 21 chr1 82733980 82734263 -159930090 - Charlie2 DNA MER1_type -2525 337 1 23 54 0 0 chr1 82734324 82734361 -159929992 + AT_rich Low_complexity Low_complexity 1 37 0 213 286 0 57 chr1 82735325 82735395 -159928958 + MIR SINE MIR 91 156 -106 220 257 29 0 chr1 82736170 82736240 -159928113 + GA-rich Low_complexity Low_complexity 2 73 0 557 244 98 49 chr1 82736306 82736470 -159927883 - MER5A DNA MER1_type 0 189 18 376 275 28 50 chr1 82736614 82736796 -159927557 + MER5B DNA MER1_type 1 178 0 223 176 0 59 chr1 82741303 82741354 -159922999 + CT-rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr1 82741434 82741455 -159922898 + AT_rich Low_complexity Low_complexity 1 21 0 1370 189 100 4 chr1 82741460 82741637 -159922716 - AluJb SINE Alu -5 307 92 198 0 0 0 chr1 82741637 82741659 -159922694 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1370 189 100 4 chr1 82741659 82741761 -159922592 - AluJb SINE Alu -220 92 1 30 45 0 0 chr1 82742366 82742410 -159921943 + AT_rich Low_complexity Low_complexity 1 44 0 700 262 58 13 chr1 82743489 82743714 -159920639 + MIR SINE MIR 13 247 -15 1304 214 21 10 chr1 82743851 82744141 -159920212 + LTR40b LTR ERVL 168 460 -2 186 43 0 0 chr1 82744419 82744442 -159919911 + (A)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr1 82744619 82744650 -159919703 + AT_rich Low_complexity Low_complexity 1 31 0 342 335 88 22 chr1 82745523 82745705 -159918648 + MIR SINE MIR 15 208 -54 330 26 0 0 chr1 82745757 82745796 -159918557 + (ATG)n Simple_repeat Simple_repeat 1 39 0 613 143 13 39 chr1 82746045 82746199 -159918154 + CT-rich Low_complexity Low_complexity 4 153 0 22 35 0 0 chr1 82747481 82747510 -159916843 + AT_rich Low_complexity Low_complexity 1 29 0 272 245 104 9 chr1 82747558 82747664 -159916689 - L1ME4a LINE L1 -40 6081 5966 411 264 141 27 chr1 82747693 82747992 -159916361 - L1ME4a LINE L1 -229 5892 5560 1191 181 5 0 chr1 82748243 82748453 -159915900 - L1PA16 LINE L1 -5 6161 5951 1616 147 9 72 chr1 82750727 82751060 -159913293 - MER44D DNA MER2_type -1 608 28 835 287 136 21 chr1 82751730 82752306 -159912047 + L2 LINE L2 2661 3308 -5 23 54 0 0 chr1 82753318 82753355 -159910998 + AT_rich Low_complexity Low_complexity 1 37 0 286 292 17 8 chr1 82753710 82753830 -159910523 + L1ME4a LINE L1 5848 5968 -153 477 286 77 0 chr1 82754022 82754309 -159910044 + L1ME4a LINE L1 5586 5894 -227 21 36 0 0 chr1 82754461 82754489 -159909864 + AT_rich Low_complexity Low_complexity 1 28 0 2428 92 0 0 chr1 82754522 82754825 -159909528 + AluY SINE Alu 1 303 -8 337 277 0 40 chr1 82755469 82755570 -159908783 - MER58 DNA MER1_type -2323 97 1 736 244 21 67 chr1 82756488 82756726 -159907627 + MIR SINE MIR 32 258 -4 3435 133 4 20 chr1 82757702 82758238 -159906115 - MER1A DNA MER1_type 0 527 1 21 0 0 0 chr1 82758443 82758464 -159905889 + AT_rich Low_complexity Low_complexity 1 21 0 643 319 47 13 chr1 82758640 82758941 -159905412 - LTR16A1 LTR ERVL 0 457 147 419 264 61 27 chr1 82760834 82760982 -159903371 + MIR SINE MIR 40 192 -70 320 266 160 12 chr1 82761131 82761300 -159903053 - MIR SINE MIR -1 261 68 276 30 0 0 chr1 82761750 82761783 -159902570 + (TG)n Simple_repeat Simple_repeat 1 33 0 270 246 0 0 chr1 82761968 82762025 -159902328 - L2 LINE L2 0 3313 3257 1658 147 4 0 chr1 82763814 82764086 -159900267 - L1MA6 LINE L1 -4 6296 6024 22 0 0 0 chr1 82764998 82765020 -159899333 + AT_rich Low_complexity Low_complexity 1 22 0 332 143 191 0 chr1 82765190 82765274 -159899079 + L1 LINE L1 4930 5029 -1117 295 200 0 0 chr1 82765268 82765333 -159899020 + L1P LINE L1 4600 4664 -1482 * 315 332 72 30 chr1 82765757 82765992 -159898361 + L1ME LINE L1 4958 5202 -944 404 335 54 19 chr1 82766059 82766354 -159897999 + L1ME LINE L1 5308 5610 -552 1530 112 48 0 chr1 82766809 82767058 -159897295 + L1PA13 LINE L1 5898 6158 -5 21 36 0 0 chr1 82768574 82768602 -159895751 + AT_rich Low_complexity Low_complexity 1 28 0 489 330 119 9 chr1 82769216 82769443 -159894910 + MIR SINE MIR 1 252 -10 477 279 144 50 chr1 82770754 82770955 -159893398 + MIR SINE MIR 9 228 -34 245 241 35 23 chr1 82770955 82771042 -159893311 - L1MCa LINE L1 -4333 2093 2006 14272 136 32 8 chr1 82771079 82773441 -159890912 - Tigger1 DNA MER2_type 0 2418 1 258 216 0 0 chr1 82773449 82773523 -159890830 + (TG)n Simple_repeat Simple_repeat 1 74 0 230 284 21 21 chr1 82773523 82773618 -159890735 + GA-rich Low_complexity Low_complexity 1 95 0 273 373 21 14 chr1 82775041 82775183 -159889170 - MARNA DNA Mariner -170 416 274 226 254 14 0 chr1 82775273 82775344 -159889009 + (TAA)n Simple_repeat Simple_repeat 1 72 0 529 309 43 24 chr1 82775346 82775556 -159888797 - MIR SINE MIR -15 247 34 28 0 0 0 chr1 82776835 82776863 -159887490 + AT_rich Low_complexity Low_complexity 1 28 0 3846 292 120 19 chr1 82777631 82779485 -159884868 + L2 LINE L2 1237 3269 -44 1354 132 45 9 chr1 82780386 82780606 -159883747 + MER30 DNA MER1_type 1 228 -2 493 323 127 4 chr1 82780724 82780953 -159883400 - MIR SINE MIR 0 262 6 1065 188 22 6 chr1 82781476 82781657 -159882696 - MER5A DNA MER1_type 0 189 6 189 0 0 0 chr1 82781841 82781862 -159882491 + (A)n Simple_repeat Simple_repeat 1 21 0 2384 57 0 10 chr1 82781865 82782165 -159882188 + AluY SINE Alu 1 297 -14 234 250 0 0 chr1 82783127 82783191 -159881162 + L1M4 LINE L1 418 481 -6374 1989 128 21 0 chr1 82783479 82783637 -159880716 - AluSx SINE Alu -18 294 126 183 80 0 0 chr1 82783637 82783662 -159880691 + (TA)n Simple_repeat Simple_repeat 1 25 0 1989 128 21 0 chr1 82783662 82783791 -159880562 - AluSx SINE Alu -186 126 1 1013 187 84 36 chr1 82784084 82784335 -159880018 + MLT1C LTR MaLR 8 270 -197 263 250 12 81 chr1 82784651 82784823 -159879530 + L1M4 LINE L1 1278 1437 -5422 * 1343 251 84 31 chr1 82784819 82785332 -159879021 + L1ME1 LINE L1 5622 6161 -5 1316 175 138 15 chr1 82785386 82785654 -159878699 + AluJo SINE Alu 1 301 -1 219 319 33 33 chr1 82785758 82785849 -159878504 - L2 LINE L2 -249 3023 2933 253 295 98 36 chr1 82787053 82787165 -159877188 + MIR3 SINE MIR 38 156 -52 23 0 0 0 chr1 82789120 82789143 -159875210 + AT_rich Low_complexity Low_complexity 1 23 0 223 283 0 17 chr1 82789252 82789312 -159875041 + GA-rich Low_complexity Low_complexity 2 60 0 365 248 45 38 chr1 82790979 82791112 -159873241 + MER94 DNA DNA 1 134 0 314 336 45 45 chr1 82791114 82791337 -159873016 + L2 LINE L2 2630 2852 -462 528 274 0 8 chr1 82792106 82792230 -159872123 + MER74A LTR ERVL 324 446 -112 1204 192 140 28 chr1 82792251 82792501 -159871852 - AluJo SINE Alu -31 281 4 299 213 88 0 chr1 82792505 82792585 -159871768 + MLT2B1 LTR ERVL 1 87 -433 715 165 0 16 chr1 82792594 82792715 -159871638 + MER74A LTR ERVL 440 558 0 370 324 23 120 chr1 82792913 82793172 -159871181 + L2 LINE L2 2989 3222 -50 1087 201 71 19 chr1 82793357 82793665 -159870688 + MER33 DNA MER1_type 1 324 0 275 263 32 51 chr1 82794892 82795109 -159869244 + L1M4 LINE L1 2922 3134 -4004 213 213 0 0 chr1 82795109 82795156 -159869197 + (TA)n Simple_repeat Simple_repeat 1 47 0 4054 130 53 5 chr1 82795156 82795816 -159868537 + Tigger2 DNA MER2_type 1 692 -2026 1484 165 28 0 chr1 82795907 82796156 -159868197 + Tigger2 DNA MER2_type 2462 2717 -1 201 39 0 0 chr1 82796169 82796195 -159868158 + (CA)n Simple_repeat Simple_repeat 2 27 0 397 312 149 18 chr1 82796211 82796493 -159867860 + L1M4 LINE L1 3150 3468 -3489 242 275 0 0 chr1 82796523 82796592 -159867761 + L1M4 LINE L1 3521 3589 -3368 858 207 21 29 chr1 82796597 82796839 -159867514 + HAL1 LINE L1 1015 1254 -1253 281 306 141 37 chr1 82797756 82797998 -159866355 + MLT1I LTR MaLR 1 267 -142 237 324 46 0 chr1 82799879 82799987 -159864366 + L1MC/D LINE L1 5546 5658 -2150 219 216 0 0 chr1 82800004 82800059 -159864294 + (CA)n Simple_repeat Simple_repeat 1 55 0 25 75 0 0 chr1 82800522 82800575 -159863778 + AT_rich Low_complexity Low_complexity 1 53 0 26 50 0 0 chr1 82800857 82800897 -159863456 + AT_rich Low_complexity Low_complexity 1 40 0 408 317 142 9 chr1 82801029 82801360 -159862993 - L1MC4a LINE L1 -1911 5897 5523 255 303 212 0 chr1 82801721 82801820 -159862533 + L2 LINE L2 3189 3308 -5 21 0 0 0 chr1 82802852 82802873 -159861480 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 82803716 82803748 -159860605 + AT_rich Low_complexity Low_complexity 1 32 0 1061 280 125 19 chr1 82804528 82804999 -159859354 + LTR33 LTR ERVL 1 521 0 1677 174 35 3 chr1 82805113 82805400 -159858953 + AluJb SINE Alu 1 296 -16 797 272 53 49 chr1 82806048 82806403 -159857950 + MLT1J LTR MaLR 2 401 -110 427 240 88 65 chr1 82810721 82811075 -159853278 + L1ME4a LINE L1 5538 5899 -222 423 318 98 23 chr1 82811093 82811307 -159853046 - MIR SINE MIR -13 249 20 328 227 102 0 chr1 82811372 82811460 -159852893 + L1ME4a LINE L1 5956 6052 -69 22 35 0 0 chr1 82811484 82811513 -159852840 + AT_rich Low_complexity Low_complexity 1 29 0 37 97 0 0 chr1 82812840 82812954 -159851399 + AT_rich Low_complexity Low_complexity 1 114 0 30 27 0 0 chr1 82813103 82813140 -159851213 + AT_rich Low_complexity Low_complexity 1 37 0 33 25 0 0 chr1 82814102 82814142 -159850211 + AT_rich Low_complexity Low_complexity 1 40 0 231 61 0 0 chr1 82814358 82814391 -159849962 + (CA)n Simple_repeat Simple_repeat 2 34 0 262 211 11 32 chr1 82814391 82814486 -159849867 + GA-rich Low_complexity Low_complexity 1 93 0 193 289 0 19 chr1 82815394 82815441 -159848912 + L2 LINE L2 3127 3172 -100 482 265 123 18 chr1 82815441 82815611 -159848742 - MER5A DNA MER1_type 0 189 2 378 297 51 36 chr1 82815806 82815944 -159848409 - MIR SINE MIR -83 179 40 293 243 27 0 chr1 82816363 82816437 -159847916 + L2 LINE L2 3238 3313 0 273 227 0 40 chr1 82817868 82817943 -159846410 + (CATATA)n Simple_repeat Simple_repeat 5 76 0 646 78 100 0 chr1 82817957 82818047 -159846306 - Tigger7 DNA MER2_type 0 2587 2489 * 1563 196 0 4 chr1 82818045 82818311 -159846042 - Tigger7 DNA MER2_type -2220 267 3 279 0 0 0 chr1 82818311 82818342 -159846011 + (TG)n Simple_repeat Simple_repeat 2 32 0 312 209 0 0 chr1 82818358 82818449 -159845904 + GA-rich Low_complexity Low_complexity 2 92 0 244 257 143 0 chr1 82820902 82820972 -159843381 - L2 LINE L2 -48 3224 3145 192 182 0 0 chr1 82820995 82821039 -159843314 + (TG)n Simple_repeat Simple_repeat 1 44 0 * 463 56 28 0 chr1 82821038 82821109 -159843244 + (GA)n Simple_repeat Simple_repeat 1 73 0 209 254 141 0 chr1 82821519 82821590 -159842763 + MIR SINE MIR 46 126 -136 1920 169 68 0 chr1 82821590 82821956 -159842397 - MLT1A2-int LTR MaLR -1340 395 5 237 132 0 0 chr1 82821983 82822021 -159842332 + (TA)n Simple_repeat Simple_repeat 2 39 0 1444 170 131 33 chr1 82822053 82822389 -159841964 - MLT1A2 LTR MaLR -2 372 4 258 282 56 0 chr1 82822397 82822468 -159841885 - MIR SINE MIR -108 154 80 1706 206 80 48 chr1 82822892 82823368 -159840985 - MLT1D LTR MaLR -3 502 12 916 173 19 6 chr1 82823448 82823603 -159840750 - MSTD LTR MaLR 0 396 240 2480 193 35 7 chr1 82823603 82824060 -159840293 + LTR42 LTR ERVL 1 470 -25 225 114 0 0 chr1 82824070 82824105 -159840248 - MSTD LTR MaLR -144 252 218 226 284 57 0 chr1 82824303 82824391 -159839962 - MIR3 SINE MIR -6 202 110 182 103 0 26 chr1 82824841 82824880 -159839473 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 332 315 118 0 chr1 82825683 82825810 -159838543 - MIR SINE MIR -87 175 34 203 250 17 17 chr1 82825841 82825901 -159838452 + CT-rich Low_complexity Low_complexity 1 60 0 486 284 90 0 chr1 82825943 82826098 -159838255 - LTR16A LTR ERVL -23 427 259 511 264 50 33 chr1 82826403 82826585 -159837768 + MIR SINE MIR 45 229 -33 206 308 0 15 chr1 82826820 82826885 -159837468 - L2 LINE L2 -341 2973 2910 198 0 0 0 chr1 82826955 82826977 -159837376 + (TG)n Simple_repeat Simple_repeat 1 22 0 187 257 95 0 chr1 82827300 82827374 -159836979 - MIR SINE MIR -60 202 122 2189 115 55 25 chr1 82827592 82827956 -159836397 + THE1C LTR MaLR 1 375 0 327 182 10 91 chr1 82828225 82828324 -159836029 + L1MC4 LINE L1 6614 6704 -1338 194 150 25 0 chr1 82828610 82828650 -159835703 + GA-rich Low_complexity Low_complexity 4 44 0 813 172 0 0 chr1 82830497 82830619 -159833734 + FLAM_C SINE Alu 3 124 -19 351 282 94 42 chr1 82830816 82831029 -159833324 - MIR SINE MIR -10 252 29 471 264 20 76 chr1 82831157 82831354 -159832999 + MLT1L LTR MaLR 196 381 -234 317 228 20 20 chr1 82831416 82831517 -159832836 + MLT1L LTR MaLR 507 607 -8 1357 155 61 145 chr1 82832597 82833004 -159831349 + MLT1A2 LTR MaLR 1 373 -1 1606 171 77 20 chr1 82833131 82833482 -159830871 - MLT1B LTR MaLR 0 390 20 21 0 0 0 chr1 82834718 82834739 -159829614 + AT_rich Low_complexity Low_complexity 1 21 0 499 266 95 49 chr1 82835395 82835430 -159828923 + Charlie2 DNA MER1_type 44 76 -2706 1778 140 66 41 chr1 82835430 82835794 -159828559 + THE1C LTR MaLR 1 373 -2 499 266 95 49 chr1 82835794 82836021 -159828332 + Charlie2 DNA MER1_type 76 318 -2464 * 1311 183 4 19 chr1 82836009 82836271 -159828082 + Charlie2 DNA MER1_type 1836 2093 -769 274 344 0 0 chr1 82837959 82838049 -159826304 + MIR SINE MIR 2 91 -171 5429 119 57 48 chr1 82838068 82839234 -159825119 + MER11A LTR ERVK 1 1266 0 400 230 87 16 chr1 82839237 82839363 -159824990 + MIR SINE MIR 118 252 -10 289 314 42 8 chr1 82839430 82839548 -159824805 - L2 LINE L2 -3 3310 3189 216 191 21 0 chr1 82840996 82841043 -159823310 + C-rich Low_complexity Low_complexity 3 50 0 22 35 0 0 chr1 82841281 82841310 -159823043 + GC_rich Low_complexity Low_complexity 1 29 0 207 195 0 0 chr1 82841553 82841594 -159822759 + (CA)n Simple_repeat Simple_repeat 2 42 0 216 161 89 18 chr1 82842073 82842129 -159822224 + MIR3 SINE MIR 96 155 -53 183 359 55 55 chr1 82842380 82842597 -159821756 + L2 LINE L2 2949 3165 -107 380 351 22 45 chr1 82842727 82842949 -159821404 - MIR SINE MIR -34 228 12 1135 171 209 33 chr1 82843993 82844356 -159819997 - MSTC LTR MaLR -1 427 1 1452 238 15 12 chr1 82844373 82844713 -159819640 + MER58B DNA MER1_type 1 341 0 204 276 53 26 chr1 82844776 82844852 -159819501 + L2 LINE L2 3195 3272 0 353 232 0 0 chr1 82844942 82845011 -159819342 + MLT-int LTR MaLR 703 771 -964 1236 203 34 91 chr1 82845287 82845672 -159818681 + MLT1A1 LTR MaLR 3 365 0 670 227 128 12 chr1 82847319 82847491 -159816862 - MIR SINE MIR -69 193 2 1100 274 30 25 chr1 82849396 82849757 -159814596 + MLT1I LTR MaLR 47 409 0 254 307 67 0 chr1 82849757 82849832 -159814521 + MIR SINE MIR 70 149 -59 562 277 114 16 chr1 82849881 82850140 -159814213 - MIR SINE MIR -1 261 2 30 59 0 0 chr1 82850183 82850234 -159814119 + AT_rich Low_complexity Low_complexity 1 51 0 290 333 141 6 chr1 82851270 82851426 -159812927 - MIR SINE MIR -16 246 70 332 292 200 0 chr1 82851537 82851722 -159812631 - MIR SINE MIR -6 256 35 263 356 22 0 chr1 82851762 82851897 -159812456 + L3 LINE CR1 832 969 -608 288 256 32 88 chr1 82852316 82852441 -159811912 - MER91C DNA MER1_type 0 140 23 328 323 127 26 chr1 82852583 82852812 -159811541 + L3 LINE CR1 1143 1394 -183 391 293 163 14 chr1 82853475 82853690 -159810663 - Charlie8 DNA MER1_type -2165 252 6 208 238 0 0 chr1 82855872 82855914 -159808439 + CT-rich Low_complexity Low_complexity 3 44 0 238 330 90 32 chr1 82856754 82856942 -159807411 - MIR SINE MIR -50 212 14 215 314 88 20 chr1 82857724 82857826 -159806527 - L2 LINE L2 -25 3247 3139 184 371 86 11 chr1 82857993 82858260 -159806093 - L2 LINE L2 -559 2755 2469 21 36 0 0 chr1 82858306 82858334 -159806019 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 82858636 82858657 -159805696 + AT_rich Low_complexity Low_complexity 1 21 0 732 231 0 0 chr1 82858669 82858812 -159805541 - FRAM SINE Alu -30 146 4 217 150 25 0 chr1 82858956 82858996 -159805357 - L2 LINE L2 0 3272 3232 296 274 0 29 chr1 82859071 82859173 -159805180 + (TATATG)n Simple_repeat Simple_repeat 6 104 0 29 18 8 0 chr1 82859334 82859414 -159804939 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr1 82859820 82859866 -159804487 + AT_rich Low_complexity Low_complexity 1 46 0 399 203 225 0 chr1 82860415 82860553 -159803800 + L2 LINE L2 2587 2755 -559 2207 57 0 0 chr1 82860713 82860978 -159803375 - AluY SINE Alu -10 301 37 880 304 99 41 chr1 82860978 82861340 -159803013 + L2 LINE L2 2929 3311 -2 195 278 119 63 chr1 82861576 82861702 -159802651 - MIR SINE MIR -13 249 117 199 392 25 38 chr1 82861802 82861960 -159802393 - L2 LINE L2 -182 3090 2935 27 29 0 0 chr1 82862512 82862546 -159801807 + AT_rich Low_complexity Low_complexity 1 34 0 207 246 0 0 chr1 82862780 82862837 -159801516 + (TA)n Simple_repeat Simple_repeat 1 57 0 5189 95 13 8 chr1 82862837 82863525 -159800828 - L1PA13 LINE L1 -9 6154 5460 1695 121 4 4 chr1 82863525 82863765 -159800588 - AluSx SINE Alu -30 282 43 5189 95 13 8 chr1 82863765 82863826 -159800527 - L1PA13 LINE L1 -703 5460 5401 1574 161 133 6 chr1 82864606 82864928 -159799425 + MLT1A1 LTR MaLR 1 363 -2 2180 99 0 33 chr1 82864951 82865254 -159799099 - AluY SINE Alu -14 297 5 469 360 141 7 chr1 82865652 82866071 -159798282 - L2 LINE L2 -836 2478 2004 23 33 0 0 chr1 82866922 82866952 -159797401 + AT_rich Low_complexity Low_complexity 1 30 0 1090 197 101 5 chr1 82867060 82867278 -159797075 - MER8 DNA MER2_type 0 239 1 23 86 0 0 chr1 82867358 82867416 -159796937 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr1 82867458 82867481 -159796872 + AT_rich Low_complexity Low_complexity 1 23 0 635 285 84 20 chr1 82867654 82868001 -159796352 - L1ME4a LINE L1 -245 5876 5508 1981 110 0 11 chr1 82868265 82868537 -159795816 - AluSx SINE Alu -43 269 1 23 0 0 0 chr1 82869147 82869170 -159795183 + AT_rich Low_complexity Low_complexity 1 23 0 1226 260 93 34 chr1 82869541 82869826 -159794527 + L2 LINE L2 2846 3168 -145 405 0 0 0 chr1 82869826 82869871 -159794482 + (TC)n Simple_repeat Simple_repeat 2 46 0 1226 260 93 34 chr1 82869871 82870027 -159794326 + L2 LINE L2 3168 3313 0 321 219 0 0 chr1 82870139 82870203 -159794150 + MIR SINE MIR 69 132 -130 315 0 0 0 chr1 82870203 82870238 -159794115 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 43122 40 10 4 chr1 82870241 82876347 -159788006 - L1PA4 LINE L1 -3 6152 7 508 211 55 8 chr1 82876353 82876481 -159787872 + MIR SINE MIR 120 253 -9 2311 146 11 3 chr1 82876862 82877224 -159787129 - MLT1A1 LTR MaLR 0 365 1 304 301 61 131 chr1 82877762 82878237 -159786116 - L2 LINE L2 -641 2673 2232 457 267 45 45 chr1 82878264 82878421 -159785932 - MLT1L LTR MaLR -33 582 426 339 272 37 37 chr1 82878421 82878557 -159785796 - LTR16A1 LTR ERVL 0 457 322 329 320 72 87 chr1 82878665 82879342 -159785011 - L2 LINE L2 -1483 1831 1165 233 383 96 37 chr1 82879748 82879936 -159784417 + L2 LINE L2 2635 2833 -481 634 234 142 5 chr1 82879967 82880164 -159784189 + MIR SINE MIR 3 226 -36 1455 152 158 21 chr1 82880206 82880536 -159783817 - THE1C LTR MaLR 0 375 1 821 255 59 0 chr1 82880561 82880765 -159783588 - MIR SINE MIR -41 221 6 1926 114 36 42 chr1 82880954 82881262 -159783091 - AluSx SINE Alu 0 312 7 382 345 14 14 chr1 82881554 82881699 -159782654 + MIR SINE MIR 47 191 -71 210 278 44 56 chr1 82881836 82881926 -159782427 + MIR SINE MIR 64 152 -110 418 167 21 0 chr1 82883394 82883475 -159780878 + MLT1J1 LTR MaLR 122 206 -244 763 226 50 68 chr1 82883478 82884067 -159780286 - L1MEc LINE L1 -3617 2809 2278 264 277 47 34 chr1 82884062 82884210 -159780143 - L1MEc LINE L1 -4812 1614 1465 * 248 254 0 0 chr1 82884212 82884267 -159780086 + AluJ/FLAM SINE Alu 3 57 -245 2417 68 3 7 chr1 82884953 82885260 -159779093 - AluY SINE Alu -5 306 1 884 179 35 0 chr1 82885266 82885411 -159778942 - AluJb SINE Alu -34 278 129 355 240 128 34 chr1 82885966 82886145 -159778208 - HAL1b LINE L1 -109 1239 1044 266 287 0 0 chr1 82886247 82886334 -159778019 - HAL1b LINE L1 -310 1038 952 857 276 93 16 chr1 82886654 82887085 -159777268 - HAL1b LINE L1 -817 531 68 271 327 50 10 chr1 82889207 82889308 -159775045 - L2 LINE L2 -8 3264 3160 383 250 154 39 chr1 82889411 82889567 -159774786 + MER5B DNA MER1_type 1 174 -4 21 0 0 0 chr1 82889641 82889662 -159774691 + AT_rich Low_complexity Low_complexity 1 21 0 484 284 68 19 chr1 82889950 82890112 -159774241 + MER5B DNA MER1_type 5 174 -4 343 186 144 51 chr1 82890116 82890234 -159774119 + MLT1H LTR MaLR 1 129 -420 185 291 51 25 chr1 82890971 82891050 -159773303 - L3b LINE CR1 -135 1448 1368 371 326 61 7 chr1 82891180 82891327 -159773026 + MIR SINE MIR 49 203 -59 21 57 0 0 chr1 82893544 82893579 -159770774 + AT_rich Low_complexity Low_complexity 1 35 0 730 312 34 8 chr1 82893755 82893989 -159770364 + MIR SINE MIR 20 259 -3 29 0 0 0 chr1 82894180 82894209 -159770144 + AT_rich Low_complexity Low_complexity 1 29 0 347 271 12 0 chr1 82894222 82894307 -159770046 - L2 LINE L2 -14 3299 3214 227 298 0 24 chr1 82894939 82895023 -159769330 + T-rich Low_complexity Low_complexity 5 86 0 23 0 0 0 chr1 82895455 82895478 -159768875 + AT_rich Low_complexity Low_complexity 1 23 0 454 241 49 79 chr1 82895543 82895746 -159768607 + L2 LINE L2 3114 3310 -3 2459 54 0 3 chr1 82895785 82896079 -159768274 - AluY SINE Alu -18 293 1 218 306 87 71 chr1 82896120 82896303 -159768050 + MIR SINE MIR 66 251 -11 418 273 8 33 chr1 82896398 82896519 -159767834 + L2 LINE L2 3192 3309 -4 458 108 14 0 chr1 82898908 82898982 -159765371 + (TG)n Simple_repeat Simple_repeat 2 76 0 1718 124 124 54 chr1 82899502 82899873 -159764480 + MER57A LTR ERV1 7 403 0 1724 196 3 0 chr1 82900102 82900393 -159763960 + AluJo SINE Alu 3 294 -18 242 178 22 0 chr1 82901507 82901552 -159762801 - MER45C DNA AcHobo -7 946 901 * 281 253 120 0 chr1 82901549 82901624 -159762729 - MER45C DNA AcHobo -320 633 550 570 208 20 0 chr1 82901876 82901977 -159762376 - MER45C DNA AcHobo -845 108 6 1680 118 29 5 chr1 82902690 82903024 -159761329 - MSTA LTR MaLR 0 428 1 1651 166 14 4 chr1 82903543 82903863 -159760490 - AluJb SINE Alu 0 326 4 30 27 0 0 chr1 82903951 82903988 -159760365 + AT_rich Low_complexity Low_complexity 1 37 0 674 338 66 9 chr1 82904115 82904553 -159759800 - L1ME LINE L1 -384 5778 5316 663 279 103 39 chr1 82904748 82905046 -159759307 - MLT1J LTR MaLR -124 353 46 335 331 98 35 chr1 82905105 82905184 -159759169 - L1ME LINE L1 -960 5186 5113 2317 87 0 0 chr1 82905184 82905483 -159758870 - AluY SINE Alu -12 299 1 335 331 98 35 chr1 82905483 82905691 -159758662 - L1ME LINE L1 -1033 5113 4865 1288 273 94 7 chr1 82905691 82906116 -159758237 - LTR16B LTR ERVL -2 462 1 335 331 98 35 chr1 82906116 82906226 -159758127 - L1ME LINE L1 -1281 4865 4763 314 299 67 31 chr1 82906270 82906723 -159757630 - L1ME LINE L1 -1439 4707 4222 1022 270 90 56 chr1 82906836 82907479 -159756874 - L1ME LINE L1 -2143 4003 3304 1980 93 0 15 chr1 82907479 82907748 -159756605 - AluSx SINE Alu -8 304 40 1022 270 90 56 chr1 82907748 82908228 -159756125 - L1ME LINE L1 -2842 3304 2842 22 35 0 0 chr1 82908625 82908654 -159755699 + AT_rich Low_complexity Low_complexity 1 29 0 2284 51 3 10 chr1 82909291 82909584 -159754769 + L1PA7 LINE L1 5861 6151 -3 1660 140 0 33 chr1 82910062 82910334 -159754019 - THE1B LTR MaLR 0 364 102 2692 178 18 26 chr1 82910334 82910941 -159753412 + pTR5 LTR ERV1 743 1344 -1094 4032 133 103 28 chr1 82910957 82911721 -159752632 + LTR12 LTR ERV1 5 826 0 718 87 115 0 chr1 82911721 82911814 -159752539 - THE1B LTR MaLR -255 109 1 936 85 0 0 chr1 82911816 82911946 -159752407 - THE1B-int LTR MaLR -2 1578 1449 225 193 34 57 chr1 82912721 82912809 -159751544 - MIR SINE MIR 0 262 177 234 356 87 34 chr1 82913052 82913201 -159751152 + MIR SINE MIR 95 251 -11 529 315 68 36 chr1 82915111 82915518 -159748835 + L2 LINE L2 2365 2983 -289 23 0 0 0 chr1 82915756 82915779 -159748574 + AT_rich Low_complexity Low_complexity 1 23 0 543 149 0 11 chr1 82915858 82915945 -159748408 + MLT1A1 LTR MaLR 1 86 -279 * 801 180 0 0 chr1 82915938 82916066 -159748287 + MLT1A1 LTR MaLR 225 352 -13 215 221 9 62 chr1 82916158 82916227 -159748126 + A-rich Low_complexity Low_complexity 4 66 -44 504 63 0 25 chr1 82916227 82916306 -159748047 + L1PA6 LINE L1 6078 6154 0 215 221 9 62 chr1 82916306 82916349 -159748004 + A-rich Low_complexity Low_complexity 66 110 0 624 323 15 20 chr1 82916949 82917144 -159747209 + MER91A DNA MER1_type 3 196 0 4381 178 31 26 chr1 82918794 82919966 -159744387 - L1MB4 LINE L1 0 6180 5004 1642 199 0 10 chr1 82919977 82920274 -159744079 + AluJb SINE Alu 17 310 -2 296 272 0 4 chr1 82920276 82920361 -159743992 - L1MB4 LINE L1 -1285 4861 4779 769 154 39 32 chr1 82920462 82920618 -159743735 - MLT1D LTR MaLR -8 497 341 641 158 6 101 chr1 82920607 82920765 -159743588 - MLT1D LTR MaLR -483 143 1 * 229 348 11 22 chr1 82920839 82920928 -159743425 + L2 LINE L2 3179 3266 -6 363 330 38 43 chr1 82921536 82921721 -159742632 - MIR SINE MIR 0 262 79 2055 160 29 87 chr1 82921749 82922200 -159742153 + MSTB LTR MaLR 2 426 0 386 216 201 46 chr1 82923081 82923275 -159741078 + MIR SINE MIR 37 260 -2 1070 249 85 25 chr1 82923391 82923757 -159740596 + L2 LINE L2 1610 1997 -1317 485 209 0 0 chr1 82923783 82923874 -159740479 - FLAM_A SINE Alu -51 91 1 341 185 11 87 chr1 82923909 82924001 -159740352 + MER21B LTR ERV1 12 96 -767 2537 259 103 11 chr1 82924005 82924731 -159739622 + MER21B LTR ERV1 19 811 -52 1297 249 79 34 chr1 82924772 82925217 -159739136 + L2 LINE L2 2067 2531 -783 875 273 275 25 chr1 82925241 82925767 -159738586 + L2 LINE L2 2660 3313 0 452 325 98 5 chr1 82925825 82926019 -159738334 + MIR SINE MIR 17 228 -34 202 305 113 26 chr1 82927602 82927753 -159736600 + MIR SINE MIR 89 252 -10 185 267 181 0 chr1 82927763 82927868 -159736485 + MIR SINE MIR 35 158 -104 1820 122 35 40 chr1 82927868 82928250 -159736103 + MSTA LTR MaLR 1 375 0 371 204 54 0 chr1 82928258 82928351 -159736002 + MIR SINE MIR 165 262 0 2413 73 7 3 chr1 82929220 82929523 -159734830 + AluY SINE Alu 1 304 -7 461 324 147 0 chr1 82929529 82929699 -159734654 - MIR SINE MIR -8 254 60 423 315 172 40 chr1 82929693 82929899 -159734454 - L2 LINE L2 -23 3285 3108 * 1907 149 68 11 chr1 82929899 82930268 -159734085 + MLT1B LTR MaLR 1 390 0 423 315 172 40 chr1 82930268 82930388 -159733965 - L2 LINE L2 -200 3108 2921 455 296 89 40 chr1 82930425 82930672 -159733681 - MIR SINE MIR -1 261 3 197 280 161 49 chr1 82931962 82932105 -159732248 - MIR SINE MIR -3 259 101 7604 148 13 65 chr1 82932789 82934364 -159729989 - L1PA11 LINE L1 -1913 4233 2741 5745 148 24 2 chr1 82934357 82935380 -159728973 + L1PA11 LINE L1 4257 5302 -844 * 2572 116 0 11 chr1 82935490 82935868 -159728485 + L1PA11 LINE L1 5799 6172 -2 405 262 124 35 chr1 82936349 82936494 -159727859 - MIR3 SINE MIR -6 202 45 23 0 0 0 chr1 82936791 82936814 -159727539 + AT_rich Low_complexity Low_complexity 1 23 0 295 327 64 0 chr1 82938841 82938951 -159725402 + MIR SINE MIR 20 136 -126 191 291 0 0 chr1 82939314 82939369 -159724984 - L2 LINE L2 -1881 1433 1379 273 83 0 0 chr1 82939796 82939832 -159724521 + MADE1 DNA Mariner 1 36 -44 414 293 176 34 chr1 82940344 82940549 -159723804 - MIR SINE MIR -26 236 3 2557 137 40 5 chr1 82941995 82942419 -159721934 - Tigger2 DNA MER2_type 0 2718 2280 339 164 33 0 chr1 82942419 82942480 -159721873 - Tigger2 DNA MER2_type -2647 71 9 605 312 102 0 chr1 82942778 82942983 -159721370 + MIR SINE MIR 31 256 -6 747 198 0 31 chr1 82943345 82943507 -159720846 + L1MB7 LINE L1 16 172 -6370 4888 237 73 66 chr1 82943508 82945075 -159719278 + L1MB7 LINE L1 861 2415 -4267 2327 81 3 0 chr1 82945075 82945396 -159718957 + AluY SINE Alu 1 322 0 4888 237 73 66 chr1 82945396 82946331 -159718022 + L1MB7 LINE L1 2415 3342 -3340 2113 119 0 17 chr1 82946331 82946633 -159717720 + AluSx SINE Alu 3 299 -13 4888 237 73 66 chr1 82946633 82947093 -159717260 + L1MB7 LINE L1 3342 3797 -2885 2100 126 3 0 chr1 82947093 82947387 -159716966 + AluSq SINE Alu 1 295 -18 4888 237 73 66 chr1 82947387 82947865 -159716488 + L1MB7 LINE L1 3797 4270 -2412 847 178 7 14 chr1 82947865 82948011 -159716342 + FRAM SINE Alu 18 162 -14 2417 73 0 0 chr1 82948011 82948300 -159716053 + AluY SINE Alu 1 289 -22 4888 237 73 66 chr1 82948300 82950223 -159714130 + L1MB7 LINE L1 4269 6518 -164 791 180 18 97 chr1 82950244 82950461 -159713892 + L1MB7 LINE L1 5976 6175 -9 4436 168 26 4 chr1 82950519 82951483 -159712870 + L1M2 LINE L1 4491 5480 -743 8309 200 31 29 chr1 82951492 82951859 -159712494 + L1M1 LINE L1 13 378 -7187 1647 173 58 30 chr1 82951859 82952224 -159712129 - THE1C LTR MaLR 0 375 1 8309 200 31 29 chr1 82952224 82953590 -159710763 + L1M1 LINE L1 378 1749 -5816 8132 126 25 40 chr1 82953690 82955047 -159709306 - THE1B-int LTR MaLR -244 1336 1 2592 105 11 6 chr1 82955047 82955409 -159708944 - THE1B LTR MaLR 0 364 1 288 397 17 9 chr1 82955784 82955900 -159708453 + MIR SINE MIR 28 144 -64 1956 143 43 37 chr1 82956051 82956401 -159707952 + THE1B LTR MaLR 1 352 -12 2179 114 0 3 chr1 82957292 82957591 -159706762 + AluSx SINE Alu 4 301 -11 224 222 19 0 chr1 82958000 82958054 -159706299 + (CA)n Simple_repeat Simple_repeat 2 56 0 1245 61 12 0 chr1 82958306 82958470 -159705883 - L1MA1 LINE L1 -4 6298 6133 22 35 0 0 chr1 82958570 82958599 -159705754 + AT_rich Low_complexity Low_complexity 1 29 0 363 328 240 0 chr1 82959135 82959327 -159705026 - MIR SINE MIR -18 244 7 243 0 0 0 chr1 82959750 82959777 -159704576 + (TG)n Simple_repeat Simple_repeat 1 27 0 1372 175 68 0 chr1 82960735 82960998 -159703355 + MLT2C1 LTR ERVL 116 396 -1 347 326 54 23 chr1 82961027 82961156 -159703197 + L2 LINE L2 3140 3272 0 189 261 22 0 chr1 82961278 82961324 -159703029 + MIR SINE MIR 78 124 -84 436 216 37 45 chr1 82963436 82963570 -159700783 - MER94 DNA DNA -1 133 1 21 36 0 0 chr1 82964151 82964179 -159700174 + AT_rich Low_complexity Low_complexity 1 28 0 231 264 19 0 chr1 82965170 82965223 -159699130 - L2 LINE L2 -68 3245 3192 346 331 209 14 chr1 82965527 82966016 -159698337 - L2 LINE L2 -1047 2267 1684 749 300 59 4 chr1 82967203 82967440 -159696913 - MIR SINE MIR 0 262 13 893 305 164 34 chr1 82967576 82968424 -159695929 - L2 LINE L2 0 3313 2350 968 136 41 53 chr1 82968424 82968593 -159695760 + FRAM SINE Alu 1 167 -9 403 267 60 0 chr1 82968637 82968753 -159695600 - L2 LINE L2 -1003 2311 2189 696 159 0 9 chr1 82968753 82968866 -159695487 + AluSq/x SINE Alu 5 116 -197 886 172 110 62 chr1 82969046 82969255 -159695098 - MER20 DNA MER1_type 0 219 1 24 53 0 0 chr1 82969514 82969552 -159694801 + AT_rich Low_complexity Low_complexity 1 38 0 199 297 122 47 chr1 82970945 82971093 -159693260 + MIR SINE MIR 35 193 -69 308 191 15 44 chr1 82971633 82971701 -159692652 - L2 LINE L2 0 3313 3248 1405 226 31 31 chr1 82972644 82973003 -159691350 + MLT2D LTR ERVL 1 359 -55 252 86 0 0 chr1 82973007 82973042 -159691311 + (TG)n Simple_repeat Simple_repeat 2 36 0 257 132 40 40 chr1 82973069 82973145 -159691208 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 321 87 43 0 chr1 82973145 82973191 -159691162 + MLT2D LTR ERVL 367 414 0 387 319 231 20 chr1 82973813 82974315 -159690038 + L2 LINE L2 1387 1994 -1320 695 267 40 13 chr1 82974347 82974572 -159689781 - MIR SINE MIR -8 254 24 443 340 139 53 chr1 82974573 82975465 -159688888 + L2 LINE L2 2009 2977 -337 254 333 50 17 chr1 82975530 82975650 -159688703 + MER5A DNA MER1_type 63 186 -3 239 291 96 91 chr1 82975675 82975874 -159688479 + L2 LINE L2 3028 3227 -45 2374 92 0 0 chr1 82976319 82976612 -159687741 - AluSg SINE Alu -17 293 1 596 205 32 89 chr1 82976758 82976948 -159687405 - MIR SINE MIR -17 245 67 191 394 47 55 chr1 82977588 82977931 -159686422 - L2 LINE L2 -14 3258 2919 991 167 52 5 chr1 82978642 82978834 -159685519 + MER3 DNA MER1_type 9 209 0 363 261 128 33 chr1 82978680 82978860 -159685493 - MER3 DNA MER1_type 0 209 13 * 621 306 58 35 chr1 82978894 82979240 -159685113 - L2 LINE L2 -1116 2198 1845 376 216 31 10 chr1 82979255 82979352 -159685001 - U6 snRNA snRNA -7 100 2 234 150 0 0 chr1 82979413 82979453 -159684900 + (TA)n Simple_repeat Simple_repeat 2 41 0 198 211 63 137 chr1 82980141 82980236 -159684117 - L2 LINE L2 -34 3279 3192 967 234 130 20 chr1 82980334 82980633 -159683720 + MLT1J2 LTR MaLR 1 332 -118 231 372 62 35 chr1 82980767 82980993 -159683360 - L2 LINE L2 -216 3056 2825 2558 127 3 0 chr1 82982058 82982421 -159681932 - THE1B LTR MaLR 0 364 1 10896 95 17 32 chr1 82982421 82984026 -159680327 - THE1B-int LTR MaLR 0 1580 1 1943 130 47 44 chr1 82984027 82984230 -159680123 - THE1B LTR MaLR -1 363 157 1471 62 8 124 chr1 82984230 82984487 -159679866 + AluY SINE Alu 78 304 -7 1943 130 47 44 chr1 82984487 82984645 -159679708 - THE1B LTR MaLR -207 157 1 330 308 50 8 chr1 82985983 82986103 -159678250 + MIR SINE MIR 20 144 -118 1485 146 4 24 chr1 82986234 82986481 -159677872 + AluJb SINE Alu 57 298 -14 292 232 146 0 chr1 82987436 82987518 -159676835 - MIR SINE MIR -119 143 50 22 35 0 0 chr1 82987782 82987811 -159676542 + AT_rich Low_complexity Low_complexity 1 29 0 211 307 0 0 chr1 82989413 82989488 -159674865 + G-rich Low_complexity Low_complexity 1 75 0 507 236 176 14 chr1 82990393 82990541 -159673812 - MER5A DNA MER1_type 0 189 18 379 284 47 8 chr1 82990622 82990749 -159673604 - L3 LINE CR1 -61 1516 1385 477 149 46 0 chr1 82990824 82990911 -159673442 + Tigger5 DNA MER2_type 2233 2323 0 2642 146 16 25 chr1 82990933 82991420 -159672933 + Tigger7 DNA MER2_type 35 517 -1970 357 105 0 18 chr1 82991421 82991478 -159672875 + Tigger7 DNA MER2_type 2421 2476 -11 427 302 139 10 chr1 82991481 82991683 -159672670 + MIR SINE MIR 31 258 -4 197 370 62 0 chr1 82992796 82992877 -159671476 - L3 LINE CR1 -208 1369 1284 26 30 0 0 chr1 82992997 82993030 -159671323 + AT_rich Low_complexity Low_complexity 1 33 0 27 73 0 0 chr1 82993305 82993360 -159670993 + AT_rich Low_complexity Low_complexity 1 55 0 384 267 69 35 chr1 82993918 82994120 -159670233 - MLT1K LTR MaLR -2 586 378 22 0 0 0 chr1 82996020 82996042 -159668311 + AT_rich Low_complexity Low_complexity 1 22 0 599 327 101 48 chr1 82996054 82996836 -159667517 - L2 LINE L2 -24 3289 2399 6100 69 3 70 chr1 82996852 82997935 -159666418 - pTR5 LTR ERV1 0 2606 1520 * 11981 81 5 5 chr1 82997934 82999618 -159664735 - HERV9 LTR ERV1 -1961 6438 4756 11534 101 3 4 chr1 82999617 83001308 -159663045 - HERV9 LTR ERV1 -5427 2972 1283 * 674 193 27 13 chr1 83001307 83001457 -159662896 - HERV9 LTR ERV1 -8246 153 2 * 1743 77 0 0 chr1 83001481 83001714 -159662639 - LTR12 LTR ERV1 0 714 482 5198 89 105 4 chr1 83001714 83002464 -159661889 - LTR12 LTR ERV1 0 826 1 619 289 18 77 chr1 83002464 83002525 -159661828 - L2 LINE L2 -939 2375 2312 1815 184 31 26 chr1 83002525 83002911 -159661442 - MLT1B LTR MaLR 0 390 3 619 289 18 77 chr1 83002911 83003122 -159661231 - L2 LINE L2 -1002 2312 2119 219 281 99 41 chr1 83003417 83003588 -159660765 - L2 LINE L2 -93 3220 3040 572 127 0 0 chr1 83003591 83003670 -159660683 + AluSp/q SINE Alu 214 292 -21 302 328 93 16 chr1 83003670 83003853 -159660500 - L2 LINE L2 -264 3049 2853 569 311 83 10 chr1 83003898 83004175 -159660178 - L2 LINE L2 -625 2689 2389 2783 19 0 0 chr1 83004175 83004484 -159659869 + AluYa5 SINE Alu 1 309 -2 569 311 83 10 chr1 83004484 83004495 -159659858 - L2 LINE L2 -925 2389 2380 315 238 0 0 chr1 83004531 83004615 -159659738 - L1MC4 LINE L1 -1344 6698 6615 474 261 0 0 chr1 83004616 83004754 -159659599 + (TA)n Simple_repeat Simple_repeat 2 139 0 225 280 96 72 chr1 83004756 83004811 -159659542 - L2 LINE L2 -1090 2224 2172 1014 192 18 40 chr1 83004811 83005035 -159659318 - MER20 DNA MER1_type 0 219 1 225 280 96 72 chr1 83005035 83005104 -159659249 - L2 LINE L2 -1142 2172 2097 206 303 69 62 chr1 83005743 83005888 -159658465 + L2 LINE L2 2717 2862 -452 245 354 62 9 chr1 83005928 83006041 -159658312 + MIR SINE MIR 20 138 -70 638 243 0 0 chr1 83006102 83006242 -159658111 + MER58B DNA MER1_type 198 337 -4 2088 104 42 0 chr1 83006504 83006792 -159657561 + AluSc SINE Alu 1 300 -9 2530 73 0 0 chr1 83007101 83007402 -159656951 + AluSx SINE Alu 1 301 -11 391 315 87 111 chr1 83007485 83007620 -159656733 + L2 LINE L2 2859 2996 -276 2246 112 0 16 chr1 83007620 83007932 -159656421 - AluSq SINE Alu -6 307 1 391 315 87 111 chr1 83007932 83008212 -159656141 + L2 LINE L2 2996 3264 -8 2251 91 17 0 chr1 83008212 83008508 -159655845 + AluSp SINE Alu 1 301 -12 25 51 0 0 chr1 83009354 83009393 -159654960 + AT_rich Low_complexity Low_complexity 1 39 0 241 319 109 8 chr1 83010342 83010461 -159653892 + MIR SINE MIR 48 178 -84 1118 187 0 0 chr1 83010592 83010795 -159653558 - MER105 DNA DNA -1 203 1 21 0 0 0 chr1 83011518 83011539 -159652814 + AT_rich Low_complexity Low_complexity 1 21 0 2173 190 75 17 chr1 83011992 83012514 -159651839 - L1MB3 LINE L1 0 6183 5632 2165 128 73 14 chr1 83012661 83013005 -159651348 + THE1B LTR MaLR 1 364 0 12043 89 2 2 chr1 83013005 83014580 -159649773 + THE1B-int LTR MaLR 1 1576 -4 1459 142 94 22 chr1 83014581 83014848 -159649505 + THE1B LTR MaLR 79 364 0 247 258 45 15 chr1 83015690 83015756 -159648597 + L2 LINE L2 3203 3270 -2 694 179 0 50 chr1 83016195 83016335 -159648018 - FLAM_C SINE Alu 0 133 1 2280 144 59 24 chr1 83016399 83016465 -159647888 - Tigger2 DNA MER2_type -1 2717 2655 1857 151 13 7 chr1 83016465 83016764 -159647589 - AluJb SINE Alu -11 301 1 2280 144 59 24 chr1 83016764 83017120 -159647233 - Tigger2 DNA MER2_type -63 2655 2280 427 143 0 14 chr1 83017118 83017188 -159647165 - Tigger2 DNA MER2_type -2649 69 1 * 204 357 141 22 chr1 83017297 83017482 -159646871 + L2 LINE L2 2973 3179 -93 376 326 35 7 chr1 83018664 83018805 -159645548 - L2 LINE L2 -2854 460 316 339 272 0 25 chr1 83018891 83018972 -159645381 - L2 LINE L2 0 3272 3194 347 315 99 0 chr1 83019320 83019431 -159644922 - L2 LINE L2 0 3313 3192 586 341 88 25 chr1 83019721 83020155 -159644198 + L1ME LINE L1 5274 5734 -387 24 53 0 0 chr1 83020568 83020606 -159643747 + AT_rich Low_complexity Low_complexity 1 38 0 281 281 13 84 chr1 83021802 83021995 -159642358 + MER5A DNA MER1_type 1 189 0 317 271 82 41 chr1 83022202 83022324 -159642029 - MER91C DNA MER1_type -12 128 2 5453 122 144 25 chr1 83022805 83023904 -159640449 + Tigger3b DNA MER2_type 1 1230 -1 383 244 42 128 chr1 83024265 83024577 -159639776 + Charlie8 DNA MER1_type 27 1398 -1019 702 229 30 6 chr1 83024666 83024832 -159639521 - MER45A DNA AcHobo 0 178 9 739 160 27 53 chr1 83025614 83025802 -159638551 - L1MC2 LINE L1 -23 6321 6139 329 266 42 62 chr1 83025832 83026091 -159638262 - L1MCb LINE L1 -4971 1583 1330 347 170 280 40 chr1 83026339 83026439 -159637914 - L2 LINE L2 0 3313 3190 294 259 0 0 chr1 83026496 83026554 -159637799 + L2 LINE L2 2992 3049 -223 2843 238 69 10 chr1 83027131 83028326 -159636027 - L1MC4 LINE L1 0 8042 6671 22 56 0 0 chr1 83033313 83033349 -159631004 + AT_rich Low_complexity Low_complexity 1 36 0 389 266 16 70 chr1 83034337 83034465 -159629888 + MIR3 SINE MIR 34 154 -54 3404 205 44 16 chr1 83036219 83037222 -159627131 - L1MB7 LINE L1 -12 6172 5143 233 215 0 25 chr1 83039667 83039746 -159624607 + CT-rich Low_complexity Low_complexity 3 79 0 277 201 0 0 chr1 83039839 83039916 -159624437 - L1MCb LINE L1 -4883 1162 1095 1106 263 94 35 chr1 83039916 83040258 -159624095 + MLT1E LTR MaLR 229 590 -3 851 215 126 5 chr1 83040278 83040501 -159623852 + MIR SINE MIR 12 261 -1 219 191 48 40 chr1 83040501 83040627 -159623726 + (TAA)n Simple_repeat Simple_repeat 2 128 0 996 280 79 21 chr1 83040645 83041024 -159623329 - MLT1I LTR MaLR -8 401 1 376 319 119 13 chr1 83041896 83042131 -159622222 + L1ME4a LINE L1 5267 5526 -636 311 278 74 79 chr1 83042146 83042362 -159621991 + L1ME4a LINE L1 5834 6048 -73 235 211 0 0 chr1 83042388 83042440 -159621913 - L1MC4 LINE L1 -5 8037 7986 2204 211 41 44 chr1 83042472 83043126 -159621227 - L1MC4 LINE L1 -150 7892 7241 1496 266 148 4 chr1 83043138 83043650 -159620703 - L1MC4 LINE L1 -990 7052 6467 814 234 137 0 chr1 83044115 83044312 -159620041 - MER58A DNA MER1_type 0 224 1 1884 18 2 0 chr1 83044562 83045376 -159618977 + L1PA3 LINE L1 5293 6152 -3 271 81 0 48 chr1 83049126 83049188 -159615165 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 766 283 113 32 chr1 83051787 83052471 -159611882 - L1ME LINE L1 -416 5754 4991 1867 124 4 11 chr1 83052471 83052744 -159611609 - AluSx SINE Alu -30 282 12 766 283 113 32 chr1 83052744 83052782 -159611571 - L1ME LINE L1 -1179 4991 4957 2166 201 31 31 chr1 83052929 83053417 -159610936 + MLT1D LTR MaLR 18 505 0 407 253 84 21 chr1 83053432 83053622 -159610731 - L1ME LINE L1 -1432 4714 4513 2258 84 3 0 chr1 83053657 83053968 -159610385 - L1PA10 LINE L1 -2 6166 5855 1406 253 59 37 chr1 83053968 83054426 -159609927 + MLT2B1 LTR ERVL 1 468 -52 22 0 0 0 chr1 83054521 83054543 -159609810 + AT_rich Low_complexity Low_complexity 1 22 0 843 258 98 37 chr1 83054768 83054898 -159609455 - MLT1J2 LTR MaLR 0 446 325 2335 144 26 35 chr1 83054898 83055328 -159609025 - MSTB LTR MaLR 0 426 1 9363 158 23 7 chr1 83055328 83056953 -159607400 - MSTB-int LTR MaLR 0 1651 1 2289 184 44 0 chr1 83056953 83057361 -159606992 - MSTB LTR MaLR 0 426 1 843 258 98 37 chr1 83057361 83057641 -159606712 - MLT1J2 LTR MaLR -120 326 10 378 303 55 36 chr1 83059378 83059543 -159604810 - MER5A DNA MER1_type -15 174 7 1096 147 215 32 chr1 83059627 83059878 -159604475 - AluSg SINE Alu -3 297 1 951 34 84 0 chr1 83059893 83060012 -159604341 - MER85 DNA T2_type -10 129 1 277 348 43 51 chr1 83060365 83060503 -159603850 + L2 LINE L2 3134 3270 -2 292 314 69 15 chr1 83060659 83060863 -159603490 + L1M4 LINE L1 4348 4562 -1584 302 28 0 0 chr1 83060919 83060955 -159603398 + LTR23 LTR ERV1 320 355 -82 24 0 0 0 chr1 83060959 83060983 -159603370 + AT_rich Low_complexity Low_complexity 1 24 0 1987 293 65 21 chr1 83060988 83061797 -159602556 - HERV16 LTR ERVL -2707 2289 1458 323 253 121 0 chr1 83061825 83061916 -159602437 - HERV16 LTR ERVL -3656 1340 1239 1015 268 13 0 chr1 83061971 83062202 -159602151 - HERV16 LTR ERVL -3869 1127 894 315 250 11 0 chr1 83062270 83062358 -159601995 - L1MC4 LINE L1 -811 7231 7143 301 273 150 31 chr1 83062666 83062767 -159601586 + HAL1b LINE L1 1034 1122 -226 1089 200 91 49 chr1 83062767 83063117 -159601236 - MLT1A1 LTR MaLR 0 365 1 301 273 150 31 chr1 83063117 83063275 -159601078 + HAL1b LINE L1 1122 1324 -24 580 314 134 41 chr1 83063787 83064280 -159600073 + L2 LINE L2 2052 2590 -724 294 270 86 63 chr1 83064283 83064457 -159599896 + L2 LINE L2 2445 2622 -692 237 304 184 19 chr1 83064468 83064626 -159599727 + L2 LINE L2 2304 2487 -827 1735 262 144 25 chr1 83064690 83064797 -159599556 - L1M4 LINE L1 -1399 4747 4654 2846 118 5 20 chr1 83064797 83065236 -159599117 - MSTB1 LTR MaLR 0 432 1 1735 262 144 25 chr1 83065236 83066033 -159598320 - L1M4 LINE L1 -1492 4654 3658 1768 136 35 55 chr1 83066033 83066379 -159597974 - MER44D DNA MER2_type 0 609 1 1735 262 144 25 chr1 83066379 83066503 -159597850 - L1M4 LINE L1 -2488 3658 3550 217 276 6 29 chr1 83067097 83067271 -159597082 + (TTATA)n Simple_repeat Simple_repeat 1 170 0 * 361 191 60 18 chr1 83067176 83067344 -159597009 + (TATAA)n Simple_repeat Simple_repeat 2 176 0 * 415 178 40 23 chr1 83067308 83067555 -159596798 + (TTATA)n Simple_repeat Simple_repeat 1 251 0 392 145 60 42 chr1 83067589 83067755 -159596598 + (TATAA)n Simple_repeat Simple_repeat 3 171 0 43 56 0 0 chr1 83067759 83067830 -159596523 + AT_rich Low_complexity Low_complexity 1 71 0 2077 182 25 33 chr1 83070304 83070699 -159593654 - MSTB1 LTR MaLR 0 432 41 6581 51 1 0 chr1 83070710 83071528 -159592825 - L1PA6 LINE L1 -2 6152 5334 310 200 0 0 chr1 83071528 83071583 -159592770 - MSTB1 LTR MaLR -377 55 1 390 240 8 39 chr1 83071723 83071852 -159592501 - L1MEd LINE L1 -4943 1176 1052 890 303 112 57 chr1 83071896 83072542 -159591811 + L1MEd LINE L1 59 739 -5380 3585 198 53 17 chr1 83072594 83073443 -159590910 - L1MD3 LINE L1 -11 8025 7167 32 26 0 0 chr1 83073443 83073482 -159590871 + AT_rich Low_complexity Low_complexity 1 39 0 859 276 90 44 chr1 83073533 83074076 -159590277 + L1MEd LINE L1 895 1493 -4817 2682 172 76 4 chr1 83074082 83074593 -159589760 + MER44D DNA MER2_type 3 605 0 878 244 98 33 chr1 83074730 83075245 -159589108 + MLT1E2 LTR MaLR 1 557 -69 10341 170 55 53 chr1 83075258 83077665 -159586688 - Tigger1 DNA MER2_type 0 2418 8 2039 116 0 11 chr1 83077665 83077981 -159586372 + AluSx SINE Alu 1 313 0 312 203 0 0 chr1 83077992 83078056 -159586297 + MLT1E2 LTR MaLR 591 654 0 280 240 80 0 chr1 83078343 83078443 -159585910 - L1MEd LINE L1 -5058 1061 954 1300 223 81 10 chr1 83078550 83078891 -159585462 - MLT1A1 LTR MaLR 0 365 1 809 236 20 26 chr1 83079067 83079262 -159585091 + MIR SINE MIR 5 198 -64 298 227 93 31 chr1 83080850 83080947 -159583406 + MIR SINE MIR 94 196 -66 327 291 139 0 chr1 83081071 83081229 -159583124 - MIR SINE MIR -11 251 72 403 271 10 4 chr1 83081389 83081500 -159582853 + MIR3 SINE MIR 50 158 -50 250 273 68 0 chr1 83081511 83081599 -159582754 + MIR SINE MIR 101 194 -68 701 270 88 82 chr1 83081609 83082123 -159582230 - MLT1G1 LTR MaLR -2 593 77 196 371 63 19 chr1 83082626 83082785 -159581568 - MIR3 SINE MIR -19 189 24 310 271 4 142 chr1 83083288 83083513 -159580840 + HAL1b LINE L1 1129 1322 -26 1213 112 31 25 chr1 83083572 83083768 -159580585 + L1PA10 LINE L1 5971 6167 -1 258 56 0 0 chr1 83083804 83083840 -159580513 + (CA)n Simple_repeat Simple_repeat 2 37 0 358 309 41 0 chr1 83083847 83083970 -159580383 - MIR SINE MIR -58 204 77 2845 155 34 40 chr1 83083970 83084498 -159579855 - MER44D DNA MER2_type -1 704 180 208 277 46 0 chr1 83084557 83084622 -159579731 - L2 LINE L2 -15 3298 3231 1618 200 11 33 chr1 83085162 83085522 -159578831 - MLT1A1 LTR MaLR -12 353 2 189 198 222 25 chr1 83090809 83090890 -159573463 + L3 LINE CR1 787 883 -694 530 302 38 9 chr1 83091761 83091973 -159572380 - MIR SINE MIR -43 219 2 272 288 171 0 chr1 83093064 83093175 -159571178 - MIR SINE MIR -1 261 132 520 316 149 5 chr1 83093213 83093428 -159570925 - MIR SINE MIR -4 258 13 324 48 0 0 chr1 83094587 83094629 -159569724 + (TG)n Simple_repeat Simple_repeat 1 42 0 963 306 61 14 chr1 83094651 83094945 -159569408 - MLT1J LTR MaLR -102 409 102 27 62 0 0 chr1 83094969 83095017 -159569336 + AT_rich Low_complexity Low_complexity 1 48 0 86 60 0 0 chr1 83095214 83095363 -159568990 + AT_rich Low_complexity Low_complexity 1 149 0 397 50 33 0 chr1 83095574 83095634 -159568719 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 598 270 184 0 chr1 83095661 83095846 -159568507 - MIR SINE MIR -38 224 6 31 26 0 0 chr1 83095928 83095966 -159568387 + AT_rich Low_complexity Low_complexity 1 38 0 271 263 78 58 chr1 83095978 83096221 -159568132 - L1MC4 LINE L1 -938 7104 6857 1071 272 76 23 chr1 83096601 83096994 -159567359 + L1MC4a LINE L1 5474 5887 -1921 1209 209 0 0 chr1 83098101 83098321 -159566032 + AluJo SINE Alu 85 304 -8 374 339 118 12 chr1 83098376 83098715 -159565638 + L1M4 LINE L1 4540 4914 -1232 204 40 0 0 chr1 83099205 83099230 -159565123 + (TG)n Simple_repeat Simple_repeat 1 25 0 26 74 0 0 chr1 83099302 83099356 -159564997 + AT_rich Low_complexity Low_complexity 1 54 0 279 318 33 23 chr1 83099539 83099874 -159564479 + L1M4 LINE L1 4487 4823 -1323 791 301 82 11 chr1 83099997 83100279 -159564074 + MLT1J LTR MaLR 210 511 0 1752 256 119 21 chr1 83100616 83101467 -159562886 - L2 LINE L2 -4 3309 2375 1560 339 83 14 chr1 83101512 83102087 -159562266 + MER115 DNA AcHobo 29 643 -50 303 313 73 57 chr1 83102301 83102493 -159561860 + MIR SINE MIR 59 253 -9 202 224 20 0 chr1 83103066 83103115 -159561238 + (TAG)n Simple_repeat Simple_repeat 1 50 0 2311 106 38 93 chr1 83103204 83103657 -159560696 - MSTA LTR MaLR 0 428 1 2980 180 11 2 chr1 83103810 83104382 -159559971 + L1MB2 LINE L1 5595 6171 0 2342 152 10 0 chr1 83104993 83105382 -159558971 - L1PA16 LINE L1 -9 6157 5765 292 258 11 75 chr1 83105668 83105761 -159558592 + MER21B LTR ERV1 27 113 -750 6880 125 12 3 chr1 83105782 83107358 -159556995 - L1MA1 LINE L1 0 6302 4714 1165 247 56 59 chr1 83107359 83107751 -159556602 + MER21B LTR ERV1 104 494 -369 911 204 58 31 chr1 83107751 83107988 -159556365 - L1M4 LINE L1 -1289 4857 4611 198 71 0 0 chr1 83107988 83108016 -159556337 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 911 204 58 31 chr1 83108016 83108038 -159556315 - L1M4 LINE L1 -1535 4611 4591 * 1515 252 63 24 chr1 83108037 83108620 -159555733 - L1MEc LINE L1 -3313 2902 2297 3514 261 31 3 chr1 83108628 83109772 -159554581 - L1M4 LINE L1 -2502 3644 2470 683 236 236 24 chr1 83109778 83110028 -159554325 - L1MEc LINE L1 -6079 317 15 744 186 96 30 chr1 83110123 83110290 -159554063 - MER58A DNA MER1_type -42 182 5 518 263 82 23 chr1 83111516 83111687 -159552666 - MIR3 SINE MIR -7 201 21 276 278 164 27 chr1 83112504 83112656 -159551697 - MIR SINE MIR -65 143 20 1574 152 0 0 chr1 83114220 83114451 -159549902 - AluJb SINE Alu -81 231 1 2072 132 0 0 chr1 83115599 83115911 -159548442 - AluSg SINE Alu 0 312 1 355 320 29 0 chr1 83115925 83116028 -159548325 - L2 LINE L2 -1 3312 3207 1018 205 31 15 chr1 83116029 83116224 -159548129 + MER58A DNA MER1_type 27 224 0 265 355 216 22 chr1 83116315 83116546 -159547807 - L2 LINE L2 -188 3084 2809 1729 130 214 8 chr1 83116914 83117269 -159547084 - MSTA LTR MaLR 0 428 1 832 110 0 8 chr1 83117269 83117396 -159546957 - MSTA-int LTR MaLR 0 1651 1526 2958 278 75 2 chr1 83117522 83118404 -159545949 - L2 LINE L2 -338 2976 2031 4434 176 9 12 chr1 83118550 83119352 -159545001 - THE1-int LTR MaLR -402 1178 427 16590 209 17 17 chr1 83119354 83122242 -159542111 - L1PA15-16 LINE L1 -1021 5828 2939 2164 122 0 0 chr1 83122242 83122536 -159541817 - AluSg SINE Alu -16 294 1 16590 209 17 17 chr1 83122536 83122573 -159541780 - L1PA15-16 LINE L1 -3910 2939 2903 2035 127 3 7 chr1 83122573 83122865 -159541488 - AluSg SINE Alu -19 291 1 16590 209 17 17 chr1 83122865 83124054 -159540299 - L1PA15-16 LINE L1 -3946 2903 1736 431 163 10 20 chr1 83124205 83124303 -159540050 - L1MB7 LINE L1 -1 6183 6087 1515 231 49 55 chr1 83124313 83124785 -159539568 - MLT1D LTR MaLR -8 497 29 314 111 0 0 chr1 83124820 83124865 -159539488 - L1MB7 LINE L1 -90 6094 6050 744 245 48 71 chr1 83124879 83125148 -159539205 + L2 LINE L2 3046 3308 -5 484 338 116 0 chr1 83125509 83125716 -159538637 - MIR SINE MIR -13 249 19 2081 153 111 5 chr1 83125721 83126108 -159538245 + MSTA LTR MaLR 1 428 0 9004 179 18 7 chr1 83126108 83127742 -159536611 + MSTA-int LTR MaLR 1 1651 0 1965 152 111 28 chr1 83127742 83128137 -159536216 + MSTA LTR MaLR 1 428 0 349 299 121 18 chr1 83128889 83129052 -159535301 + MIR SINE MIR 34 215 -47 7164 48 35 3 chr1 83129156 83130740 -159533613 - L1PA5 LINE L1 -8 6146 4526 342 0 0 0 chr1 83131675 83131713 -159532640 + (TG)n Simple_repeat Simple_repeat 2 39 0 309 345 123 5 chr1 83132101 83132304 -159532049 - MIR SINE MIR 0 262 36 3807 216 18 20 chr1 83132634 83133445 -159530908 + L1PB4 LINE L1 2689 3499 -2647 1878 179 0 0 chr1 83133445 83133757 -159530596 + AluSx SINE Alu 1 312 0 3807 216 18 20 chr1 83133757 83133956 -159530397 + L1PB4 LINE L1 3499 3697 -2449 42144 39 21 2 chr1 83133959 83140021 -159524332 + L1PA3 LINE L1 2 6155 0 6877 177 39 17 chr1 83140014 83140869 -159523484 + L1PB4 LINE L1 3684 4519 -1637 * 2046 144 51 23 chr1 83140869 83141223 -159523130 + THE1B LTR MaLR 1 364 0 11845 94 2 0 chr1 83141223 83142799 -159521554 + THE1B-int LTR MaLR 1 1580 0 2235 118 48 22 chr1 83142799 83143154 -159521199 + THE1B LTR MaLR 1 364 0 6877 177 39 17 chr1 83143154 83143710 -159520643 + L1PB4 LINE L1 4519 5061 -1095 2604 103 16 8 chr1 83143710 83144079 -159520274 + THE1C LTR MaLR 1 372 -3 6877 177 39 17 chr1 83144079 83145066 -159519287 + L1PB4 LINE L1 5061 6143 -13 882 119 20 26 chr1 83145115 83145266 -159519087 + L1P5 LINE L1 5390 5539 -617 355 306 58 112 chr1 83145356 83145510 -159518843 + L2 LINE L2 2583 2744 -570 2440 69 0 3 chr1 83145510 83145816 -159518537 - AluY SINE Alu 0 311 7 355 306 58 112 chr1 83145816 83146008 -159518345 + L2 LINE L2 2744 2910 -404 594 278 74 28 chr1 83146035 83146319 -159518034 + L2 LINE L2 3017 3313 0 23 0 0 0 chr1 83147337 83147360 -159516993 + AT_rich Low_complexity Low_complexity 1 23 0 257 366 24 8 chr1 83147920 83148043 -159516310 - MIR SINE MIR -71 191 67 538 136 144 17 chr1 83148478 83148596 -159515757 + LTR37B LTR ERV1 328 460 -8 433 227 153 18 chr1 83148596 83148759 -159515594 - MIR SINE MIR -19 243 59 789 263 3 122 chr1 83148781 83149108 -159515245 + L1PA13 LINE L1 54 341 -6498 * 4477 229 29 36 chr1 83149090 83149287 -159515066 + L1PA13 LINE L1 1685 1882 -4967 2073 123 10 3 chr1 83149287 83149596 -159514757 + AluSp SINE Alu 1 311 -2 4477 229 29 36 chr1 83149596 83150986 -159513367 + L1PA13 LINE L1 1882 3273 -3576 912 145 0 0 chr1 83150986 83151128 -159513225 + L1PA15 LINE L1 6011 6155 -10 232 266 48 113 chr1 83151340 83151464 -159512889 - L2 LINE L2 -4 3268 3153 475 318 39 0 chr1 83151524 83151653 -159512700 - L2 LINE L2 -1 3312 3179 30 59 0 0 chr1 83151786 83151837 -159512516 + AT_rich Low_complexity Low_complexity 1 51 0 271 304 129 5 chr1 83152768 83152969 -159511384 - HAL1 LINE L1 -187 2320 2095 226 262 16 0 chr1 83153019 83153080 -159511273 - HAL1 LINE L1 -631 1876 1815 1149 262 127 50 chr1 83153104 83153465 -159510888 - HAL1 LINE L1 -742 1765 1433 967 199 5 21 chr1 83153465 83153656 -159510697 + MER5A DNA MER1_type 1 188 -1 1149 262 127 50 chr1 83153656 83154084 -159510269 - HAL1 LINE L1 -1074 1433 902 2385 96 0 0 chr1 83154084 83154385 -159509968 - AluSg SINE Alu -9 301 1 1149 262 127 50 chr1 83154385 83154452 -159509901 - HAL1 LINE L1 -1605 902 842 3583 142 46 16 chr1 83154463 83155088 -159509265 - MER73 LTR ERVL 0 644 1 273 303 70 26 chr1 83155088 83155353 -159509000 + MLT1I LTR MaLR 87 407 -2 295 295 90 2 chr1 83155354 83155607 -159508746 + L1 LINE L1 4883 5160 -986 242 284 11 11 chr1 83155611 83155699 -159508654 + L1ME1 LINE L1 5093 5180 -966 17908 38 1 0 chr1 83155706 83157903 -159506450 - L1PA4 LINE L1 -1171 4975 2777 7533 33 0 0 chr1 83157903 83159055 -159505298 + L1PA4 LINE L1 5001 6152 -3 2438 236 63 42 chr1 83159056 83159970 -159504383 + L1ME1 LINE L1 5186 6122 -44 324 316 60 42 chr1 83160124 83160459 -159503894 + HAL1 LINE L1 1437 1777 -730 323 245 77 49 chr1 83160555 83160769 -159503584 + L1MCa LINE L1 2232 2458 -3968 324 305 30 6 chr1 83161023 83161190 -159503163 + L1MCa LINE L1 3140 3310 -3116 698 294 105 16 chr1 83161263 83161692 -159502661 - L1ME3 LINE L1 -327 5835 5369 2428 153 92 2 chr1 83161845 83162322 -159502031 - L1MB4 LINE L1 0 6180 5661 459 266 161 21 chr1 83162685 83163065 -159501288 + L1MCa LINE L1 4457 4889 -1537 226 200 0 36 chr1 83163201 83163256 -159501097 + L1MCa LINE L1 5015 5067 -1359 212 286 200 9 chr1 83163381 83163486 -159500867 + L3 LINE CR1 540 664 -913 225 286 0 39 chr1 83163580 83163657 -159500696 - MIR SINE MIR -31 231 158 954 307 154 18 chr1 83163717 83164231 -159500122 + L3 LINE CR1 818 1401 -176 371 245 93 17 chr1 83164294 83164428 -159499925 - L1ME3 LINE L1 0 6170 6026 209 333 69 74 chr1 83164514 83164703 -159499650 - L2 LINE L2 -194 3078 2891 709 256 37 66 chr1 83165321 83165563 -159498790 - MIR SINE MIR 0 262 28 342 257 216 7 chr1 83166155 83166303 -159498050 + MIR SINE MIR 5 183 -79 5422 123 0 10 chr1 83169235 83169760 -159494593 - L1PA13 LINE L1 -3 6160 5631 2062 143 34 17 chr1 83169760 83170118 -159494235 - THE1B LTR MaLR 0 364 1 11543 94 2 24 chr1 83170118 83171733 -159492620 - THE1B-int LTR MaLR 0 1580 1 2100 156 31 19 chr1 83171733 83172093 -159492260 - THE1B LTR MaLR 0 364 1 5422 123 0 10 chr1 83172093 83172528 -159491825 - L1PA13 LINE L1 -529 5634 5191 32629 76 4 8 chr1 83172531 83177859 -159486494 - L1PA6 LINE L1 0 6154 852 427 138 126 23 chr1 83177839 83177926 -159486427 - L1PA6 LINE L1 -6014 132 37 * 1139 135 0 0 chr1 83177926 83178104 -159486249 + HERVH LTR ERV1 1764 1941 -5772 1472 199 20 0 chr1 83178104 83178410 -159485943 - L1PA13 LINE L1 -941 5205 4894 509 120 0 0 chr1 83178409 83178484 -159485869 + L1P LINE L1 4004 4078 -2068 * 6970 48 23 0 chr1 83178486 83179842 -159484511 + L1PA6 LINE L1 4767 6140 -14 207 0 0 0 chr1 83179842 83179865 -159484488 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 6970 48 23 0 chr1 83179865 83179879 -159484474 + L1PA6 LINE L1 6140 6152 -2 386 183 0 0 chr1 83180048 83180108 -159484245 + AluJ/FLAM SINE Alu 1 60 -242 1479 161 23 4 chr1 83180122 83180382 -159483971 + L1P LINE L1 4068 4332 -1814 15120 181 19 23 chr1 83180390 83186944 -159477409 + L1PA11 LINE L1 11 7599 -13 436 314 0 0 chr1 83186966 83187071 -159477282 - MIR SINE MIR -107 155 51 323 186 221 0 chr1 83187212 83187325 -159477028 + L1MC1 LINE L1 3566 3703 -2443 5235 203 37 44 chr1 83187331 83188921 -159475432 + L1MC1 LINE L1 3870 5441 -892 2314 98 0 0 chr1 83188921 83189217 -159475136 + AluSc SINE Alu 3 298 -11 5235 203 37 44 chr1 83189217 83189941 -159474412 + L1MC1 LINE L1 5441 6168 -165 717 234 55 37 chr1 83190045 83190367 -159473986 + L1MC1 LINE L1 54 6333 0 332 330 41 23 chr1 83190440 83190661 -159473692 + HAL1 LINE L1 273 497 -2010 636 264 64 88 chr1 83190663 83191336 -159473017 + HAL1 LINE L1 1742 2398 -109 317 321 124 15 chr1 83191656 83191793 -159472560 + MIR SINE MIR 111 262 0 1493 188 113 22 chr1 83191809 83192171 -159472182 + MSTD LTR MaLR 2 396 0 2134 110 4 0 chr1 83193056 83193364 -159470989 - AluSg SINE Alu 0 309 1 225 191 21 0 chr1 83193466 83193513 -159470840 - MARNA DNA Mariner -63 523 476 21 0 0 0 chr1 83193815 83193836 -159470517 + AT_rich Low_complexity Low_complexity 1 21 0 216 209 0 0 chr1 83194069 83194112 -159470241 + T-rich Low_complexity Low_complexity 1 43 0 346 335 0 0 chr1 83194612 83194779 -159469574 + A-rich Low_complexity Low_complexity 1 167 0 276 184 0 0 chr1 83195695 83195744 -159468609 - L2 LINE L2 0 3313 3265 188 387 59 25 chr1 83195781 83195985 -159468368 - L2 LINE L2 -388 2926 2716 230 363 9 18 chr1 83196052 83196165 -159468188 - L2 LINE L2 -898 2416 2305 1780 171 13 10 chr1 83196281 83196585 -159467768 + AluSx SINE Alu 1 305 -7 515 250 167 0 chr1 83197158 83197314 -159467039 - MIR SINE MIR -18 244 63 5738 138 31 12 chr1 83197325 83198101 -159466252 - L1MA5A LINE L1 -6 6291 5531 236 30 30 0 chr1 83198101 83198134 -159466219 + (TTG)n Simple_repeat Simple_repeat 3 36 0 5738 138 31 12 chr1 83198134 83198534 -159465819 - L1MA5A LINE L1 -766 5531 5140 2228 110 3 0 chr1 83198534 83198834 -159465519 + AluSx SINE Alu 1 301 -11 5738 138 31 12 chr1 83198834 83199362 -159464991 - L1MA5A LINE L1 -1157 5140 4556 695 305 4 37 chr1 83200118 83200364 -159463989 + L2 LINE L2 2667 2904 -410 186 128 0 0 chr1 83200364 83200403 -159463950 + (TC)n Simple_repeat Simple_repeat 2 40 0 248 173 0 58 chr1 83200415 83200467 -159463886 - Alu SINE Alu -29 137 89 2446 140 105 7 chr1 83200568 83201017 -159463336 + Tigger1 DNA MER2_type 769 1261 -1157 305 332 130 65 chr1 83201036 83201298 -159463055 + L2 LINE L2 2986 3264 -8 2276 91 14 0 chr1 83201298 83201595 -159462758 + AluSp SINE Alu 1 301 -12 25 51 0 0 chr1 83202441 83202480 -159461873 + AT_rich Low_complexity Low_complexity 1 39 0 242 319 109 8 chr1 83203429 83203548 -159460805 + MIR SINE MIR 48 178 -84 1132 187 0 0 chr1 83203679 83203882 -159460471 - MER105 DNA DNA -1 203 1 21 0 0 0 chr1 83204604 83204625 -159459728 + AT_rich Low_complexity Low_complexity 1 21 0 2321 178 78 21 chr1 83205078 83205600 -159458753 - L1MB3 LINE L1 0 6183 5632 2160 128 73 14 chr1 83205747 83206091 -159458262 + THE1B LTR MaLR 1 364 0 12000 89 2 2 chr1 83206091 83207666 -159456687 + THE1B-int LTR MaLR 1 1576 -4 1556 142 94 22 chr1 83207667 83207934 -159456419 + THE1B LTR MaLR 79 364 0 248 258 45 15 chr1 83209042 83209108 -159455245 + L2 LINE L2 3203 3270 -2 693 179 0 50 chr1 83209547 83209687 -159454666 - FLAM_C SINE Alu 0 133 1 2408 143 59 30 chr1 83209751 83209817 -159454536 - Tigger2 DNA MER2_type -1 2717 2654 1815 152 14 7 chr1 83209817 83210113 -159454240 - AluJb SINE Alu -11 301 4 2408 143 59 30 chr1 83210113 83210472 -159453881 - Tigger2 DNA MER2_type -64 2654 2280 452 143 0 14 chr1 83210470 83210540 -159453813 - Tigger2 DNA MER2_type -2649 69 1 * 196 357 141 22 chr1 83210649 83210834 -159453519 + L2 LINE L2 2973 3179 -93 366 326 35 7 chr1 83212016 83212157 -159452196 - L2 LINE L2 -2854 460 316 341 272 0 25 chr1 83212243 83212324 -159452029 - L2 LINE L2 0 3272 3194 348 315 99 0 chr1 83212672 83212783 -159451570 - L2 LINE L2 0 3313 3192 300 339 105 18 chr1 83213117 83213507 -159450846 + L1ME LINE L1 5311 5734 -387 24 53 0 0 chr1 83213920 83213958 -159450395 + AT_rich Low_complexity Low_complexity 1 38 0 236 191 191 11 chr1 83214726 83214820 -159449533 + Charlie2 DNA MER1_type 2720 2830 -32 278 281 13 84 chr1 83215154 83215347 -159449006 + MER5A DNA MER1_type 1 189 0 311 271 82 41 chr1 83215554 83215676 -159448677 - MER91C DNA MER1_type -12 128 2 5513 122 144 25 chr1 83216157 83217256 -159447097 + Tigger3b DNA MER2_type 1 1230 -1 461 244 42 128 chr1 83217617 83217929 -159446424 + MER102a DNA MER1_type 27 311 -19 760 229 30 6 chr1 83218018 83218184 -159446169 - MER45A DNA AcHobo 0 178 9 783 165 27 53 chr1 83218966 83219154 -159445199 - L1MC2 LINE L1 -23 6321 6139 387 268 42 61 chr1 83219182 83219443 -159444910 - L1MEd LINE L1 -4969 1150 895 348 170 280 40 chr1 83219691 83219791 -159444562 - L2 LINE L2 0 3313 3190 294 259 0 0 chr1 83219848 83219906 -159444447 + L2 LINE L2 2992 3049 -223 3074 239 69 10 chr1 83220483 83221678 -159442675 - L1MC4 LINE L1 0 8042 6671 2365 100 3 0 chr1 83223378 83223687 -159440666 + AluSq SINE Alu 1 310 -3 708 221 117 29 chr1 83223765 83224005 -159440348 + L1MC4 LINE L1 7602 7862 -180 22 35 0 0 chr1 83224522 83224551 -159439802 + AT_rich Low_complexity Low_complexity 1 29 0 1823 121 6 82 chr1 83224692 83225007 -159439346 + AluSx SINE Alu 1 291 -21 2428 78 0 3 chr1 83225010 83225316 -159439037 + AluSx SINE Alu 1 305 -7 2079 120 10 13 chr1 83225328 83225637 -159438716 + AluSc SINE Alu 2 309 0 930 220 4 79 chr1 83225691 83225861 -159438492 - AluJo SINE Alu -22 290 142 2265 116 0 0 chr1 83225861 83226163 -159438190 - AluSx SINE Alu -10 302 1 930 220 4 79 chr1 83226163 83226233 -159438120 - AluJo SINE Alu -170 142 68 189 0 0 0 chr1 83226334 83226355 -159437998 + (CA)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr1 83227543 83227569 -159436784 + AT_rich Low_complexity Low_complexity 1 26 0 7383 39 2 0 chr1 83278680 83280098 -159384255 + L1PA4 LINE L1 4735 6152 -3 351 0 0 0 chr1 83280101 83280140 -159384213 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 321 219 0 0 chr1 83280140 83280204 -159384149 - MIR SINE MIR -130 132 69 1226 260 93 34 chr1 83280316 83280472 -159383881 - L2 LINE L2 0 3313 3168 405 0 0 0 chr1 83280472 83280517 -159383836 + (GA)n Simple_repeat Simple_repeat 2 46 0 1226 260 93 34 chr1 83280517 83280802 -159383551 - L2 LINE L2 -145 3168 2846 23 0 0 0 chr1 83281173 83281196 -159383157 + AT_rich Low_complexity Low_complexity 1 23 0 225 193 34 57 chr1 83281993 83282081 -159382272 - MIR SINE MIR 0 262 177 234 356 87 34 chr1 83282324 83282473 -159381880 + MIR SINE MIR 95 251 -11 529 315 68 36 chr1 83284383 83284790 -159379563 + L2 LINE L2 2365 2983 -289 23 0 0 0 chr1 83285028 83285051 -159379302 + AT_rich Low_complexity Low_complexity 1 23 0 543 149 0 11 chr1 83285130 83285217 -159379136 + MLT1A1 LTR MaLR 1 86 -279 * 801 180 0 0 chr1 83285210 83285338 -159379015 + MLT1A1 LTR MaLR 225 352 -13 215 221 9 62 chr1 83285430 83285499 -159378854 + A-rich Low_complexity Low_complexity 4 66 -44 504 63 0 25 chr1 83285499 83285578 -159378775 + L1PA6 LINE L1 6078 6154 0 215 221 9 62 chr1 83285578 83285621 -159378732 + A-rich Low_complexity Low_complexity 66 110 0 624 323 15 20 chr1 83286221 83286416 -159377937 + MER91A DNA MER1_type 3 196 0 4373 178 31 26 chr1 83288065 83289237 -159375116 - L1MB4 LINE L1 0 6180 5004 1642 199 0 10 chr1 83289248 83289545 -159374808 + AluJb SINE Alu 17 310 -2 296 272 0 4 chr1 83289547 83289632 -159374721 - L1MB4 LINE L1 -1285 4861 4779 769 154 39 32 chr1 83289733 83289889 -159374464 - MLT1D LTR MaLR -8 497 341 641 158 6 101 chr1 83289878 83290036 -159374317 - MLT1D LTR MaLR -483 143 1 * 229 348 11 22 chr1 83290110 83290199 -159374154 + L2 LINE L2 3179 3266 -6 363 330 38 43 chr1 83290807 83290992 -159373361 - MIR SINE MIR 0 262 79 2055 160 29 87 chr1 83291020 83291471 -159372882 + MSTB LTR MaLR 2 426 0 386 216 201 46 chr1 83292352 83292546 -159371807 + MIR SINE MIR 37 260 -2 1070 249 85 25 chr1 83292662 83293028 -159371325 + L2 LINE L2 1610 1997 -1317 485 209 0 0 chr1 83293052 83293143 -159371210 - FLAM_A SINE Alu -51 91 1 341 185 11 87 chr1 83293178 83293270 -159371083 + MER21B LTR ERV1 12 96 -767 2537 259 103 11 chr1 83293274 83294000 -159370353 + MER21B LTR ERV1 19 811 -52 1271 252 79 34 chr1 83294041 83294486 -159369867 + L2 LINE L2 2067 2531 -783 875 273 275 25 chr1 83294510 83295036 -159369317 + L2 LINE L2 2660 3313 0 524 307 88 5 chr1 83295094 83295286 -159369067 + MIR SINE MIR 17 224 -38 196 245 75 0 chr1 83295305 83295358 -159368995 - MIR SINE MIR -125 137 81 214 256 163 0 chr1 83296875 83296961 -159367392 + MIR SINE MIR 89 188 -74 185 267 181 0 chr1 83297037 83297142 -159367211 + MIR SINE MIR 35 158 -104 1820 122 35 40 chr1 83297142 83297524 -159366829 + MSTA LTR MaLR 1 375 0 371 204 54 0 chr1 83297532 83297625 -159366728 + MIR SINE MIR 165 262 0 2413 73 7 3 chr1 83298495 83298798 -159365555 + AluY SINE Alu 1 304 -7 461 324 147 0 chr1 83298804 83298974 -159365379 - MIR SINE MIR -8 254 60 423 314 174 40 chr1 83298973 83299174 -159365179 - L2 LINE L2 -28 3285 3112 * 1907 149 68 11 chr1 83299174 83299543 -159364810 + MLT1B LTR MaLR 1 390 0 423 314 174 40 chr1 83299543 83299663 -159364690 - L2 LINE L2 -201 3112 2921 455 296 89 40 chr1 83299700 83299947 -159364406 - MIR SINE MIR -1 261 3 197 280 161 49 chr1 83301237 83301380 -159362973 - MIR SINE MIR -3 259 101 7579 148 12 65 chr1 83302064 83303632 -159360721 - L1PA11 LINE L1 -1913 4233 2749 6387 102 2 5 chr1 83303632 83305531 -159358822 + L1PA11 LINE L1 4257 6172 -2 424 282 110 37 chr1 83306012 83306175 -159358178 - MIR3 SINE MIR -6 202 28 23 0 0 0 chr1 83306455 83306478 -159357875 + AT_rich Low_complexity Low_complexity 1 23 0 295 327 64 0 chr1 83308505 83308615 -159355738 + MIR SINE MIR 20 136 -126 191 291 0 0 chr1 83308978 83309033 -159355320 - L2 LINE L2 -1881 1433 1379 273 83 0 0 chr1 83309460 83309496 -159354857 + MADE1 DNA Mariner 1 36 -44 429 288 176 34 chr1 83310008 83310213 -159354140 - MIR SINE MIR -26 236 3 2557 137 40 5 chr1 83311659 83312083 -159352270 - Tigger2 DNA MER2_type 0 2718 2280 339 164 33 0 chr1 83312083 83312144 -159352209 - Tigger2 DNA MER2_type -2647 71 9 605 312 102 0 chr1 83312442 83312647 -159351706 + MIR SINE MIR 31 256 -6 747 198 0 31 chr1 83313009 83313171 -159351182 + L1MB7 LINE L1 16 172 -6370 4888 237 73 66 chr1 83313172 83314739 -159349614 + L1MB7 LINE L1 861 2415 -4267 2222 80 3 11 chr1 83314739 83315063 -159349290 + AluY SINE Alu 1 322 0 4888 237 73 66 chr1 83315063 83315998 -159348355 + L1MB7 LINE L1 2415 3342 -3340 2113 119 0 17 chr1 83315998 83316300 -159348053 + AluSx SINE Alu 3 299 -13 4888 237 73 66 chr1 83316300 83316760 -159347593 + L1MB7 LINE L1 3342 3797 -2885 2100 126 3 0 chr1 83316760 83317054 -159347299 + AluSq SINE Alu 1 295 -18 4888 237 73 66 chr1 83317054 83317532 -159346821 + L1MB7 LINE L1 3797 4270 -2412 847 178 7 14 chr1 83317532 83317678 -159346675 + FRAM SINE Alu 18 162 -14 2417 73 0 0 chr1 83317678 83317967 -159346386 + AluY SINE Alu 1 289 -22 4888 237 73 66 chr1 83317967 83319890 -159344463 + L1MB7 LINE L1 4269 6518 -164 791 180 18 97 chr1 83319911 83320128 -159344225 + L1MB7 LINE L1 5976 6175 -9 4436 168 26 4 chr1 83320186 83321150 -159343203 + L1M2 LINE L1 4491 5480 -743 11871 185 34 24 chr1 83321159 83321526 -159342827 + L1MA1 LINE L1 13 375 -7190 1647 173 58 30 chr1 83321526 83321891 -159342462 - THE1C LTR MaLR 0 375 1 11871 185 34 24 chr1 83321891 83323840 -159340513 + L1MA1 LINE L1 375 2352 -5213 14794 145 22 104 chr1 83323845 83327353 -159337000 + L1P LINE L1 12 3233 -2913 * 19693 77 31 1 chr1 83327352 83330015 -159334338 + L1PA8 LINE L1 2 2744 -3402 6964 66 7 1 chr1 83330015 83331207 -159333146 + L1PA8 LINE L1 4969 6166 -6 7123 152 38 18 chr1 83331207 83333376 -159330977 + L1MA1 LINE L1 2345 4566 -2999 1685 199 7 7 chr1 83333376 83333682 -159330671 + AluJb SINE Alu 1 306 -6 7123 152 38 18 chr1 83333682 83333803 -159330550 + L1MA1 LINE L1 4566 4683 -2882 10019 154 13 11 chr1 83333808 83334750 -159329603 + L1MA1 LINE L1 4803 5741 -1980 3035 78 10 10 chr1 83334750 83335163 -159329190 - L1PA10 LINE L1 -2 6166 5754 10019 154 13 11 chr1 83335163 83337124 -159327229 + L1MA1 LINE L1 5741 7716 -5 22 0 0 0 chr1 83337125 83337147 -159327206 + AT_rich Low_complexity Low_complexity 1 22 0 4983 138 19 4 chr1 83337147 83337966 -159326387 + L1MA9 LINE L1 5476 6307 -5 249 317 0 89 chr1 83338499 83338622 -159325731 + MIR SINE MIR 34 145 -63 320 244 100 39 chr1 83339212 83339373 -159324980 + MIR SINE MIR 42 208 -54 192 179 0 0 chr1 83339436 83339475 -159324878 + (TA)n Simple_repeat Simple_repeat 2 40 0 247 310 70 0 chr1 83339475 83339575 -159324778 - L3 LINE CR1 -217 1360 1254 427 274 96 48 chr1 83339655 83339863 -159324490 + MIR SINE MIR 45 262 0 299 325 0 0 chr1 83340130 83340244 -159324109 - MER117 DNA MER1_type -37 160 47 255 255 29 69 chr1 83340536 83340638 -159323715 - L3 LINE CR1 -836 741 644 1664 224 72 105 chr1 83340750 83341533 -159322820 + LTR41 LTR ERVL 5 761 -12 534 325 54 51 chr1 83341872 83342204 -159322149 + ERVL LTR ERVL 366 698 -5066 1006 288 81 32 chr1 83342480 83343391 -159320962 + L1MEd LINE L1 592 1650 -840 1492 329 54 17 chr1 83343991 83345079 -159319274 + ERVL LTR ERVL 1703 2868 -2128 464 261 135 74 chr1 83345306 83345790 -159318563 - MLT1F LTR MaLR -64 526 22 308 312 75 59 chr1 83345814 83346161 -159318192 - MLT1F-int LTR MaLR -6 1729 1023 4964 137 18 9 chr1 83346561 83346661 -159317692 + L1MA2 LINE L1 4745 4843 -1461 1782 174 0 3 chr1 83346661 83346955 -159317398 + AluJb SINE Alu 1 293 -19 4964 137 18 9 chr1 83346955 83348112 -159316241 + L1MA2 LINE L1 4843 6004 -300 361 97 0 7 chr1 83348122 83348203 -159316150 + L1MA2 LINE L1 6107 6185 -117 21 36 0 0 chr1 83348289 83348317 -159316036 + AT_rich Low_complexity Low_complexity 1 28 0 14460 161 16 55 chr1 83348332 83348882 -159315471 - L1MA3 LINE L1 -40 7684 7114 1971 138 7 0 chr1 83348882 83349179 -159315174 - AluSx SINE Alu -13 299 1 14460 161 16 55 chr1 83349179 83350590 -159313763 - L1MA3 LINE L1 -610 7114 5650 5490 104 7 4 chr1 83350590 83351414 -159312939 - L1MA2 LINE L1 0 6304 5478 14460 161 16 55 chr1 83351414 83353071 -159311282 - L1MA3 LINE L1 -2074 5650 4345 2242 110 0 0 chr1 83353071 83353370 -159310983 + AluSx SINE Alu 1 299 -13 14460 161 16 55 chr1 83353370 83354950 -159309403 - L1MA3 LINE L1 -3379 4345 2706 814 316 13 12 chr1 83354948 83355346 -159309007 - L1PBb LINE L1 -5343 1505 1016 * 581 339 21 28 chr1 83355470 83355797 -159308556 - L1PBb LINE L1 -5831 1018 694 630 400 52 33 chr1 83355996 83356513 -159307840 - L1PBb LINE L1 -6313 536 10 1980 245 19 2 chr1 83356550 83357080 -159307273 + L1MC2 LINE L1 4316 4854 -1292 1521 161 12 0 chr1 83357076 83357319 -159307034 + L1MC2 LINE L1 5447 5692 -652 * 2764 161 22 24 chr1 83357321 83357874 -159306479 + L1MA6 LINE L1 5749 6300 0 3317 139 28 55 chr1 83357876 83358552 -159305801 + L1MC2 LINE L1 5678 6335 -9 404 281 80 44 chr1 83358614 83358863 -159305490 + L1ME2 LINE L1 4557 4814 -1332 1525 230 18 11 chr1 83358956 83359452 -159304901 - MLT2F LTR ERVL -119 544 1 230 246 64 35 chr1 83359503 83359674 -159304679 + L1ME2 LINE L1 5124 5299 -847 438 310 120 27 chr1 83359694 83360220 -159304133 + L1ME2 LINE L1 5341 5915 -249 306 0 0 0 chr1 83360250 83360284 -159304069 + (TG)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr1 83360434 83360457 -159303896 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 258 338 12 2 chr1 83361210 83361375 -159302978 - MER117 DNA MER1_type 0 197 2 1510 173 109 16 chr1 83361457 83361832 -159302521 + LTR37A LTR ERV1 6 415 -11 297 305 95 38 chr1 83363225 83363330 -159301023 - MIR SINE MIR -62 146 36 912 299 223 16 chr1 83363468 83364007 -159300346 + L2 LINE L2 2529 3196 -117 391 330 89 72 chr1 83364386 83364789 -159299564 + L2 LINE L2 2842 3251 -21 22 35 0 0 chr1 83366423 83366452 -159297901 + AT_rich Low_complexity Low_complexity 1 29 0 199 200 0 0 chr1 83366902 83366937 -159297416 + L2 LINE L2 3274 3308 -5 339 221 144 19 chr1 83368377 83368481 -159295872 + L2 LINE L2 3193 3309 -4 26 0 0 0 chr1 83369274 83369300 -159295053 + AT_rich Low_complexity Low_complexity 1 26 0 218 341 24 12 chr1 83369381 83369463 -159294890 - L2 LINE L2 -213 3059 2977 31 0 0 0 chr1 83369463 83369494 -159294859 + AT_rich Low_complexity Low_complexity 1 31 0 495 349 97 26 chr1 83369668 83370164 -159294189 + L2 LINE L2 1600 2130 -1184 274 269 30 2 chr1 83370489 83370568 -159293785 - MIR SINE MIR -61 147 68 318 164 18 0 chr1 83371164 83371219 -159293134 - MER44D DNA MER2_type 0 705 650 3802 177 22 26 chr1 83371281 83371977 -159292376 - MER44D DNA MER2_type -40 565 1 354 275 84 15 chr1 83372811 83372942 -159291411 - MIR SINE MIR -9 253 114 * 785 331 45 8 chr1 83372939 83373184 -159291169 - L3 LINE CR1 -86 1491 1238 828 230 72 5 chr1 83373619 83373828 -159290525 - MIR SINE MIR -3 259 37 1573 170 39 39 chr1 83375822 83376157 -159288196 + MER44D DNA MER2_type 2 606 -3 427 324 70 11 chr1 83376264 83376449 -159287904 + MER91A DNA MER1_type 1 196 0 1250 231 124 24 chr1 83376994 83377453 -159286900 - MLT1D LTR MaLR 0 505 1 189 0 0 0 chr1 83378862 83378883 -159285470 + (A)n Simple_repeat Simple_repeat 1 21 0 189 74 0 0 chr1 83379281 83379308 -159285045 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 377 284 11 23 chr1 83379323 83379411 -159284942 - L2 LINE L2 -39 3233 3147 1535 173 36 7 chr1 83379469 83379747 -159284606 - MER61D LTR ERV1 0 501 216 635 126 12 176 chr1 83379802 83379999 -159284354 - MER61B LTR ERV1 -286 178 8 278 319 218 33 chr1 83380081 83380416 -159283937 + L3 LINE CR1 1180 1576 -1 206 118 0 0 chr1 83380428 83380462 -159283891 + (T)n Simple_repeat Simple_repeat 1 34 0 1948 218 34 39 chr1 83381032 83381499 -159282854 + MLT1F LTR MaLR 78 542 0 326 198 81 0 chr1 83381643 83381729 -159282624 + L1ME4a LINE L1 5822 5914 -207 399 234 113 16 chr1 83381769 83381893 -159282460 - MLT1H LTR MaLR -5 544 409 328 286 6 27 chr1 83382387 83382616 -159281737 + A-rich Low_complexity Low_complexity 1 224 0 395 163 14 142 chr1 83382717 83382858 -159281495 - LTR37A LTR ERV1 -286 140 18 404 248 186 7 chr1 83382908 83383053 -159281300 + L1MC4a LINE L1 7432 7602 -206 3183 160 2 22 chr1 83383056 83383595 -159280758 + MER44D DNA MER2_type 2 584 -21 871 192 29 0 chr1 83383608 83383780 -159280573 + L1MC4 LINE L1 7685 7861 -181 1393 169 137 20 chr1 83383780 83384124 -159280229 + LTR54B LTR ERV1 1 384 -114 802 108 48 0 chr1 83384637 83384823 -159279530 + L1MA7 LINE L1 5986 6286 -5 21 36 0 0 chr1 83384823 83384851 -159279502 + AT_rich Low_complexity Low_complexity 1 28 0 3306 110 8 2 chr1 83384864 83385354 -159278999 - L1PA15 LINE L1 -4 6161 5669 459 255 97 44 chr1 83386447 83386636 -159277717 + MIR SINE MIR 6 206 -56 210 278 44 56 chr1 83387564 83387654 -159276699 - MIR SINE MIR -110 152 64 388 345 14 14 chr1 83387791 83387936 -159276417 - MIR SINE MIR -71 191 47 1719 150 32 41 chr1 83388222 83388536 -159275817 + AluSx SINE Alu 1 311 -1 814 255 59 0 chr1 83388725 83388929 -159275424 + MIR SINE MIR 6 221 -41 1456 152 158 21 chr1 83388954 83389284 -159275069 + THE1C LTR MaLR 1 375 0 627 234 142 5 chr1 83389326 83389523 -159274830 - MIR SINE MIR -36 226 3 235 383 96 37 chr1 83389554 83389742 -159274611 - L2 LINE L2 -481 2833 2635 337 320 72 87 chr1 83390148 83390825 -159273528 + L2 LINE L2 1165 1831 -1483 299 284 31 31 chr1 83390942 83391069 -159273284 + LTR16A1 LTR ERVL 331 457 0 * 401 267 45 45 chr1 83391069 83391226 -159273127 + MLT1L LTR MaLR 426 582 -33 235 301 61 131 chr1 83391253 83391728 -159272625 + L2 LINE L2 2232 2673 -641 2311 146 11 3 chr1 83392266 83392628 -159271725 + MLT1A1 LTR MaLR 1 365 0 498 211 55 8 chr1 83393009 83393137 -159271216 - MIR SINE MIR -9 253 120 41189 40 10 4 chr1 83393143 83399230 -159265123 + L1PA4 LINE L1 7 6132 -23 263 277 0 0 chr1 83399610 83399675 -159264678 - MLT1F LTR MaLR -457 85 21 1892 207 71 69 chr1 83400506 83401056 -159263297 + MLT2B3 LTR ERVL 3 553 -1 336 306 204 24 chr1 83401415 83401621 -159262732 - MIR SINE MIR 0 262 20 24 0 0 0 chr1 83402263 83402287 -159262066 + AT_rich Low_complexity Low_complexity 1 24 0 29 60 0 0 chr1 83403026 83403076 -159261277 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr1 83403169 83403193 -159261160 + AT_rich Low_complexity Low_complexity 1 24 0 1531 85 45 18 chr1 83403317 83403541 -159260812 - MER30 DNA MER1_type 0 230 1 199 349 71 16 chr1 83404109 83404235 -159260118 + MIR SINE MIR 15 147 -115 23 33 0 0 chr1 83406352 83406382 -159257971 + AT_rich Low_complexity Low_complexity 1 30 0 535 244 306 13 chr1 83407377 83407547 -159256806 - L1ME4a LINE L1 -3 6118 5999 1128 34 41 0 chr1 83407547 83407694 -159256659 - L1PA4 LINE L1 -2 6153 6001 535 244 306 13 chr1 83407694 83407834 -159256519 - L1ME4a LINE L1 -122 5999 5717 520 269 113 46 chr1 83408010 83408356 -159255997 - L1ME4a LINE L1 -124 5997 5629 241 219 87 43 chr1 83408471 83408660 -159255693 - L1ME4a LINE L1 -725 5426 5269 1662 175 3 18 chr1 83408824 83409109 -159255244 + AluJb SINE Alu 1 281 -31 281 26 26 0 chr1 83409112 83409150 -159255203 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1231 188 27 62 chr1 83409702 83409994 -159254359 + AluJo SINE Alu 1 282 -30 639 112 0 0 chr1 83409997 83410095 -159254258 + (TA)n Simple_repeat Simple_repeat 2 99 0 844 124 0 16 chr1 83410300 83410429 -159253924 + AluJo SINE Alu 11 137 -175 189 0 0 0 chr1 83410668 83410689 -159253664 + (A)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr1 83411521 83411555 -159252798 + AT_rich Low_complexity Low_complexity 1 34 0 40509 35 22 1 chr1 83411684 83417706 -159246647 - L1PA3 LINE L1 -7 6148 2 30 45 0 0 chr1 83418374 83418418 -159245935 + AT_rich Low_complexity Low_complexity 1 44 0 1847 121 0 4 chr1 83418760 83419017 -159245336 + AluSc SINE Alu 26 281 -28 297 167 0 0 chr1 83419030 83419084 -159245269 + (TG)n Simple_repeat Simple_repeat 2 55 0 349 243 10 0 chr1 83419099 83419202 -159245151 + L1MC4 LINE L1 1996 6983 -1339 489 211 125 19 chr1 83419421 83419525 -159244828 + FLAM_A SINE Alu 6 120 -22 31 0 0 0 chr1 83420813 83420844 -159243509 + AT_rich Low_complexity Low_complexity 1 31 0 502 203 14 101 chr1 83421437 83421585 -159242768 + L2 LINE L2 3134 3268 -4 225 0 0 0 chr1 83421687 83421712 -159242641 + (CAA)n Simple_repeat Simple_repeat 2 26 0 213 246 221 33 chr1 83422224 83422346 -159242007 - MIR SINE MIR -58 204 60 189 368 33 40 chr1 83422588 83422740 -159241613 - L2 LINE L2 0 3272 3122 21 0 0 0 chr1 83423054 83423075 -159241278 + AT_rich Low_complexity Low_complexity 1 21 0 526 209 78 0 chr1 83423909 83424024 -159240329 - L2 LINE L2 0 3313 3190 393 318 9 25 chr1 83425587 83425745 -159238608 - MIR3 SINE MIR -73 135 3 24 0 0 0 chr1 83426385 83426409 -159237944 + AT_rich Low_complexity Low_complexity 1 24 0 321 314 136 8 chr1 83427005 83427123 -159237230 + L2 LINE L2 3136 3268 -4 231 36 0 0 chr1 83428444 83428472 -159235881 + (TG)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr1 83428471 83428493 -159235860 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 321 26 0 0 chr1 83429207 83429245 -159235108 + (CA)n Simple_repeat Simple_repeat 2 39 0 422 297 90 0 chr1 83430797 83430942 -159233411 + MIR SINE MIR 49 206 -56 21 36 0 0 chr1 83431406 83431434 -159232919 + AT_rich Low_complexity Low_complexity 1 28 0 284 313 62 0 chr1 83432339 83432435 -159231918 + MIR SINE MIR 1 102 -160 244 320 107 10 chr1 83432659 83432762 -159231591 - L2 LINE L2 -5 3267 3155 203 341 68 0 chr1 83433355 83433443 -159230910 + MIR SINE MIR 9 102 -160 211 185 0 31 chr1 83434083 83434148 -159230205 + GA-rich Low_complexity Low_complexity 2 64 0 288 0 0 0 chr1 83437563 83437595 -159226758 + (CA)n Simple_repeat Simple_repeat 2 33 0 344 278 171 57 chr1 83441427 83441672 -159222681 - L1M2 LINE L1 -5825 1024 752 189 115 0 0 chr1 83443167 83443193 -159221160 + MIR SINE MIR 122 147 -115 21 71 0 0 chr1 83449393 83449435 -159214918 + AT_rich Low_complexity Low_complexity 1 42 0 30 0 0 0 chr1 83450192 83450222 -159214131 + AT_rich Low_complexity Low_complexity 1 30 0 242 268 55 122 chr1 83452196 83452360 -159211993 - L2 LINE L2 -61 3211 3059 226 250 83 21 chr1 83452752 83452848 -159211505 - MER5A DNA MER1_type -1 188 87 743 148 7 70 chr1 83453497 83453639 -159210714 - FLAM_C SINE Alu 0 133 1 207 0 0 0 chr1 83454279 83454302 -159210051 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1713 164 25 4 chr1 83454363 83454644 -159209709 - AluJb SINE Alu -25 287 1 1622 209 14 0 chr1 83454757 83455040 -159209313 + AluJb SINE Alu 2 288 -24 2316 99 13 0 chr1 83455469 83455771 -159208582 - AluSg SINE Alu -4 306 1 391 249 68 104 chr1 83455961 83456331 -159208022 + L3 LINE CR1 840 1269 -308 233 299 26 26 chr1 83456377 83456454 -159207899 + L3 LINE CR1 1376 1452 -125 617 298 43 26 chr1 83457335 83457687 -159206666 - L1ME LINE L1 -375 5746 5389 2310 101 3 3 chr1 83457892 83458200 -159206153 - AluSg SINE Alu -2 308 1 216 0 0 0 chr1 83458201 83458225 -159206128 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2008 125 7 0 chr1 83458225 83458505 -159205848 - AluSg SINE Alu -28 282 1 2540 66 0 0 chr1 83460027 83460330 -159204023 - AluY SINE Alu -8 303 1 23 0 0 0 chr1 83460950 83460973 -159203380 + AT_rich Low_complexity Low_complexity 1 23 0 2047 134 0 0 chr1 83461010 83461338 -159203015 - AluSx SINE Alu 0 328 1 1959 270 100 24 chr1 83462245 83463912 -159200441 - L1ME3A LINE L1 -8 6145 4353 310 283 0 0 chr1 83463900 83463992 -159200361 - L1ME3A LINE L1 -4774 1536 1445 * 329 192 63 0 chr1 83464130 83464226 -159200127 - L1MEc LINE L1 -4862 1271 1041 328 235 113 26 chr1 83464244 83464359 -159199994 - L1MEc LINE L1 -5091 1028 904 1610 174 57 18 chr1 83468544 83468878 -159195475 + MLT1A1 LTR MaLR 19 365 0 505 320 118 13 chr1 83468958 83469186 -159195167 - MIR SINE MIR -8 254 3 302 236 113 56 chr1 83469187 83469382 -159194971 - L1ME LINE L1 -396 5725 5520 22 88 0 0 chr1 83469421 83469478 -159194875 + AT_rich Low_complexity Low_complexity 1 57 0 942 179 92 43 chr1 83469560 83469767 -159194586 - AluJo SINE Alu -95 217 1 218 342 139 0 chr1 83470413 83470492 -159193861 + L2 LINE L2 3159 3248 -24 270 301 106 18 chr1 83470666 83470779 -159193574 + MIR SINE MIR 25 147 -61 707 299 33 5 chr1 83471964 83472178 -159192175 + MIR SINE MIR 25 244 -18 335 258 0 31 chr1 83472262 83472359 -159191994 + L2 LINE L2 2966 3059 -213 2120 133 0 13 chr1 83473011 83473320 -159191033 - AluSq SINE Alu -8 305 1 277 239 45 0 chr1 83473542 83473609 -159190744 + MIR SINE MIR 37 106 -156 731 249 87 97 chr1 83473609 83474011 -159190342 + L2 LINE L2 2495 2892 -422 533 267 138 26 chr1 83474030 83474262 -159190091 + MIR SINE MIR 2 259 -3 222 91 0 0 chr1 83475178 83475211 -159189142 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 390 348 43 16 chr1 83475411 83475595 -159188758 - MER5A DNA MER1_type 0 189 1 366 235 219 17 chr1 83475698 83475817 -159188536 - MIR SINE MIR -73 189 47 237 33 0 0 chr1 83476205 83476235 -159188118 + (TTA)n Simple_repeat Simple_repeat 2 31 0 255 189 0 38 chr1 83477498 83477551 -159186802 - MIR3 SINE MIR -22 186 136 673 235 113 65 chr1 83477957 83478168 -159186185 - MIR SINE MIR -3 259 33 2624 52 3 0 chr1 83478168 83478475 -159185878 - AluY SINE Alu -3 308 1 673 235 113 65 chr1 83478475 83478510 -159185843 - MIR SINE MIR -229 33 1 959 102 199 53 chr1 83478682 83478888 -159185465 + MER46A DNA MER2_type 1 236 0 189 107 0 0 chr1 83479304 83479332 -159185021 + (CA)n Simple_repeat Simple_repeat 2 29 0 212 175 0 0 chr1 83479579 83479619 -159184734 + T-rich Low_complexity Low_complexity 1 40 0 5074 116 23 1 chr1 83479622 83480444 -159183909 - L1PB1 LINE L1 -2 6149 5310 260 68 0 23 chr1 83480444 83480488 -159183865 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 36365 86 6 9 chr1 83480488 83486624 -159177729 - L1PA6 LINE L1 -24 6130 11 2400 216 1 37 chr1 83486637 83487158 -159177195 - L1PB1 LINE L1 -840 5306 4815 2385 104 3 0 chr1 83487158 83487466 -159176887 - AluSp SINE Alu -4 309 1 2400 216 1 37 chr1 83487466 83487643 -159176710 - L1PB1 LINE L1 -1331 4815 4633 605 165 39 0 chr1 83487838 83487941 -159176412 + U6 snRNA snRNA 1 107 0 5230 192 18 5 chr1 83487945 83491262 -159173091 + L1P LINE L1 1510 4918 -1228 316 295 0 0 chr1 83491613 83491691 -159172662 - MIR SINE MIR -119 143 66 370 306 83 6 chr1 83493144 83493301 -159171052 - L3 LINE CR1 -200 1377 1209 21 57 0 0 chr1 83494177 83494212 -159170141 + AT_rich Low_complexity Low_complexity 1 35 0 214 330 94 0 chr1 83494580 83494686 -159169667 + L2 LINE L2 3182 3297 -16 287 346 48 79 chr1 83494785 83495013 -159169340 - L2 LINE L2 -87 3185 2965 301 210 86 0 chr1 83495720 83495801 -159168552 + L1ME1 LINE L1 6059 6146 -20 207 130 0 43 chr1 83495828 83495874 -159168479 + (GAGAA)n Simple_repeat Simple_repeat 2 45 0 654 241 105 11 chr1 83496799 83496990 -159167363 + MIR SINE MIR 53 261 -1 280 353 20 0 chr1 83497312 83497414 -159166939 + MIR3 SINE MIR 98 201 -7 2161 128 0 3 chr1 83497481 83497786 -159166567 - AluSx SINE Alu -8 304 1 455 273 180 0 chr1 83498151 83498301 -159166052 - MER5A DNA MER1_type -3 186 10 241 314 176 20 chr1 83499689 83499842 -159164511 - MIR3 SINE MIR -1 207 31 447 259 63 44 chr1 83499937 83500095 -159164258 - MIR SINE MIR -31 231 71 236 149 21 0 chr1 83500532 83500579 -159163774 + CT-rich Low_complexity Low_complexity 1 48 0 258 345 36 0 chr1 83500737 83500821 -159163532 - L2 LINE L2 -55 3258 3172 26 55 0 41 chr1 83501877 83501950 -159162403 + AT_rich Low_complexity Low_complexity 1 70 0 2150 107 10 0 chr1 83504695 83504985 -159159368 - AluY SINE Alu -18 293 1 22 56 0 0 chr1 83505304 83505340 -159159013 + AT_rich Low_complexity Low_complexity 1 36 0 2175 123 7 0 chr1 83506046 83506356 -159157997 + AluSx SINE Alu 1 312 0 25 65 0 0 chr1 83506363 83506409 -159157944 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chr1 83506762 83506800 -159157553 + AT_rich Low_complexity Low_complexity 1 38 0 1927 162 0 14 chr1 83509268 83509564 -159154789 - AluJb SINE Alu -20 292 1 345 308 38 44 chr1 83509566 83509725 -159154628 - MER5A DNA MER1_type -6 183 26 344 280 74 53 chr1 83511878 83512067 -159152286 - MIR3 SINE MIR -6 202 10 3664 165 48 33 chr1 83512474 83512935 -159151418 + MER44D DNA MER2_type 1 350 -2137 2045 147 0 0 chr1 83512935 83513234 -159151119 - AluSx SINE Alu -12 300 2 3664 165 48 33 chr1 83513234 83513494 -159150859 + MER44D DNA MER2_type 350 605 0 1521 191 57 7 chr1 83514826 83514989 -159149364 - AluJo SINE Alu -15 297 113 252 0 0 0 chr1 83514989 83515017 -159149336 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1521 191 57 7 chr1 83515017 83515136 -159149217 - AluJo SINE Alu -199 113 1 2408 143 36 0 chr1 83515649 83516069 -159148284 - L1MA9 LINE L1 0 6312 5878 428 280 7 0 chr1 83516563 83516713 -159147640 + CT-rich Low_complexity Low_complexity 2 152 0 2784 130 0 0 chr1 83516960 83517375 -159146978 - L1PA15 LINE L1 -1 6164 5750 237 188 261 14 chr1 83517469 83517538 -159146815 + MIR SINE MIR 36 121 -141 501 255 205 32 chr1 83517625 83518005 -159146348 + LTR16A1 LTR ERVL 6 451 -6 1503 170 117 20 chr1 83518127 83518468 -159145885 + MLT1A2 LTR MaLR 1 374 0 21 36 0 0 chr1 83518651 83518679 -159145674 + AT_rich Low_complexity Low_complexity 1 28 0 4559 176 52 14 chr1 83520728 83522158 -159142195 - L1MB4 LINE L1 0 6180 4690 368 283 184 30 chr1 83522250 83522586 -159141767 + L2 LINE L2 2220 2607 -707 24 32 0 0 chr1 83524805 83524836 -159139517 + AT_rich Low_complexity Low_complexity 1 31 0 392 311 147 48 chr1 83524960 83525253 -159139100 - L3 LINE CR1 -2 1575 1254 37 23 0 0 chr1 83525302 83525346 -159139007 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 83525965 83525987 -159138366 + AT_rich Low_complexity Low_complexity 1 22 0 183 379 48 8 chr1 83526595 83526719 -159137634 - MIR SINE MIR -61 147 19 2408 69 13 0 chr1 83526727 83527030 -159137323 - AluSp SINE Alu -5 308 2 319 164 16 0 chr1 83528248 83528309 -159136044 - HsTC2 DNA Tc2 -1824 74 13 395 324 63 7 chr1 83528310 83528452 -159135901 - L3 LINE CR1 -3 1574 1425 6316 135 48 56 chr1 83528838 83529393 -159134960 + Tigger3b DNA MER2_type 1 559 -2469 853 136 0 0 chr1 83529393 83529511 -159134842 - FLAM_C SINE Alu -15 118 1 6316 135 48 56 chr1 83529511 83530195 -159134158 + Tigger3b DNA MER2_type 559 1230 -1 242 309 89 8 chr1 83530252 83530375 -159133978 - MIR3 SINE MIR -37 171 39 29 70 0 0 chr1 83531633 83531690 -159132663 + AT_rich Low_complexity Low_complexity 1 57 0 1729 175 0 30 chr1 83531848 83532174 -159132179 + AluJb SINE Alu 1 317 0 410 247 80 38 chr1 83533112 83533351 -159131002 - L1MEd LINE L1 -3784 2345 2097 21 0 0 0 chr1 83533804 83533825 -159130528 + AT_rich Low_complexity Low_complexity 1 21 0 1014 313 143 11 chr1 83533848 83534605 -159129748 + L2 LINE L2 2453 3313 0 256 259 0 0 chr1 83534659 83534713 -159129640 - L1MEd LINE L1 -4884 1235 1182 399 261 128 10 chr1 83534732 83534935 -159129418 - L1MEd LINE L1 -4996 1123 897 2238 102 0 14 chr1 83535029 83535324 -159129029 - AluSc SINE Alu -18 291 1 1919 151 7 0 chr1 83535399 83535690 -159128663 - AluSx SINE Alu -19 293 1 274 311 57 28 chr1 83535821 83535927 -159128426 - L1MEd LINE L1 -5450 669 561 292 324 182 17 chr1 83536373 83536549 -159127804 - MIR SINE MIR 0 262 58 578 310 33 14 chr1 83537426 83537639 -159126714 - MIR SINE MIR 0 262 46 914 237 56 0 chr1 83537986 83538201 -159126152 - L1PB4 LINE L1 -3 6153 5927 23 0 0 0 chr1 83540060 83540083 -159124270 + AT_rich Low_complexity Low_complexity 1 23 0 189 302 54 39 chr1 83540970 83541099 -159123254 - L2 LINE L2 -464 2850 2720 291 271 199 7 chr1 83542245 83542396 -159121957 - L1ME3A LINE L1 -28 6142 5963 212 184 0 0 chr1 83542909 83542947 -159121406 + T-rich Low_complexity Low_complexity 1 38 0 627 130 0 19 chr1 83542948 83543056 -159121297 + AluSg/x SINE Alu 162 267 -45 252 0 0 0 chr1 83543160 83543188 -159121165 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr1 83543414 83543435 -159120918 + AT_rich Low_complexity Low_complexity 1 21 0 285 286 41 103 chr1 83544445 83544861 -159119492 + L2 LINE L2 1830 3313 0 270 222 197 8 chr1 83544865 83544982 -159119371 - L1ME4a LINE L1 -28 6093 5955 338 258 102 8 chr1 83545543 83545671 -159118682 - L1ME4a LINE L1 -15 6106 5967 22 88 0 0 chr1 83545799 83545856 -159118497 + AT_rich Low_complexity Low_complexity 1 57 0 1566 200 30 13 chr1 83545989 83546294 -159118059 - AluJo SINE Alu -2 310 1 352 353 25 0 chr1 83546604 83546723 -159117630 + MIR3 SINE MIR 36 157 -51 1584 164 4 4 chr1 83547965 83548209 -159116144 - AluJb SINE Alu -66 246 3 690 212 27 0 chr1 83548338 83548484 -159115869 - L1MD2 LINE L1 -13 6346 6197 665 117 25 12 chr1 83548484 83548600 -159115753 + MSTB1 LTR MaLR 1 129 -246 1821 138 15 23 chr1 83548631 83548965 -159115388 + MSTB1 LTR MaLR 79 432 0 392 244 17 52 chr1 83548974 83549089 -159115264 - L1MD2 LINE L1 -167 6192 6082 4232 236 70 131 chr1 83551186 83553916 -159110437 - L2 LINE L2 -1 3312 757 4096 99 0 8 chr1 83554766 83555354 -159108999 - L1PA13 LINE L1 -1 6162 5580 419 241 139 80 chr1 83555447 83555684 -159108669 + MLT1J2 LTR MaLR 200 450 0 242 345 35 0 chr1 83555688 83555775 -159108578 + MIR3 SINE MIR 87 176 -32 299 291 28 0 chr1 83556222 83556356 -159107997 + L1MC/D LINE L1 5698 5832 -359 21 36 0 0 chr1 83556432 83556460 -159107893 + AT_rich Low_complexity Low_complexity 1 28 0 345 275 58 43 chr1 83556680 83556810 -159107543 + MIR SINE MIR 86 217 -45 282 370 16 32 chr1 83556810 83556999 -159107354 - MER5A DNA MER1_type -1 188 3 237 352 40 56 chr1 83558552 83558677 -159105676 + L2 LINE L2 3148 3270 -2 2094 119 0 0 chr1 83558818 83559113 -159105240 - AluSq SINE Alu -18 295 1 751 161 44 15 chr1 83559657 83559794 -159104559 + MER30 DNA MER1_type 90 230 0 1214 278 108 39 chr1 83559960 83560853 -159103500 + HAL1 LINE L1 812 1765 -742 324 218 58 11 chr1 83560861 83560948 -159103405 - MER53 DNA DNA -98 91 1 259 257 40 30 chr1 83560972 83561073 -159103280 + HAL1 LINE L1 1816 1917 -590 326 294 52 52 chr1 83561687 83561935 -159102418 + HAL1 LINE L1 2250 2497 -10 1913 227 10 7 chr1 83562119 83562525 -159101828 + L1 LINE L1 2 408 -6801 31575 107 14 51 chr1 83562532 83568919 -159095434 + L1PA7 LINE L1 12 6154 0 1198 248 8 4 chr1 83568927 83569173 -159095180 + L1 LINE L1 785 1031 -6178 3963 198 48 10 chr1 83569196 83570159 -159094194 + L1 LINE L1 3824 4822 -2386 1661 131 3 56 chr1 83570173 83570479 -159093874 + L1MA4A LINE L1 6001 6290 -13 315 0 0 0 chr1 83571093 83571128 -159093225 + (CA)n Simple_repeat Simple_repeat 2 36 0 311 307 22 44 chr1 83571271 83571408 -159092945 + MIR SINE MIR 50 183 -79 466 301 22 62 chr1 83571478 83571750 -159092603 - L2 LINE L2 -2 3311 3051 21 0 0 0 chr1 83572167 83572188 -159092165 + AT_rich Low_complexity Low_complexity 1 21 0 1655 131 12 84 chr1 83572315 83572635 -159091718 - AluJb SINE Alu -5 307 11 1016 296 42 42 chr1 83572730 83573348 -159091005 + L2 LINE L2 2681 3296 -17 652 279 116 44 chr1 83573354 83574065 -159090288 - L1ME4a LINE L1 -75 6046 5279 453 316 52 55 chr1 83574215 83574506 -159089847 - L1ME4a LINE L1 -1034 5112 4823 2081 134 39 25 chr1 83574589 83574947 -159089406 + THE1B LTR MaLR 1 363 -1 408 333 118 30 chr1 83575066 83575396 -159088957 + L1M4 LINE L1 4730 5088 -1058 430 272 15 0 chr1 83575454 83575590 -159088763 - L1ME4a LINE L1 -296 5825 5688 22 35 0 0 chr1 83576051 83576080 -159088273 + AT_rich Low_complexity Low_complexity 1 29 0 7922 163 15 32 chr1 83576080 83576274 -159088079 - L1PB2 LINE L1 -7 6144 5948 243 0 0 0 chr1 83576274 83576301 -159088052 + (TG)n Simple_repeat Simple_repeat 2 28 0 7922 163 15 32 chr1 83576301 83578789 -159085564 - L1PB2 LINE L1 -203 5948 3512 21 0 0 0 chr1 83579481 83579502 -159084851 + AT_rich Low_complexity Low_complexity 1 21 0 192 309 0 0 chr1 83581411 83581453 -159082900 + L2 LINE L2 3210 3251 -21 802 262 22 9 chr1 83581463 83581688 -159082665 - LTR16C LTR ERVL 0 491 264 508 325 35 31 chr1 83582028 83582283 -159082070 - MIR SINE MIR 0 262 7 1237 176 64 29 chr1 83582819 83583132 -159081221 + MER33 DNA MER1_type 1 324 0 1571 233 66 37 chr1 83583206 83583698 -159080655 - MER20B DNA MER1_type 0 783 270 2003 138 29 3 chr1 83583698 83584046 -159080307 - L1MA4 LINE L1 -9 6291 5935 1571 233 66 37 chr1 83584046 83584145 -159080208 - MER20B DNA MER1_type -513 270 175 1074 241 9 0 chr1 83584151 83584375 -159079978 + MLT1F1 LTR MaLR 339 564 -3 258 81 0 0 chr1 83584507 83584544 -159079809 + (TATG)n Simple_repeat Simple_repeat 2 38 0 2268 120 28 0 chr1 83584544 83584889 -159079464 - L1PB1 LINE L1 -3 6148 5791 189 0 0 0 chr1 83584889 83584910 -159079443 + (TG)n Simple_repeat Simple_repeat 2 22 0 2268 120 28 0 chr1 83584910 83584921 -159079432 - L1PB1 LINE L1 -360 5791 5782 598 57 98 7 chr1 83584934 83585516 -159078837 + (TA)n Simple_repeat Simple_repeat 1 634 0 9756 190 24 15 chr1 83585520 83585588 -159078765 - L1PB1 LINE L1 -360 5791 5725 2445 134 3 16 chr1 83585588 83585968 -159078385 + THE1C LTR MaLR 1 375 0 9587 124 37 41 chr1 83585969 83587555 -159076798 + THE1C-int LTR MaLR 2 1580 0 2271 128 5 46 chr1 83587555 83587946 -159076407 + THE1C LTR MaLR 1 375 0 9756 190 24 15 chr1 83587946 83590746 -159073607 - L1PB1 LINE L1 -425 5726 2890 33211 94 7 27 chr1 83590854 83596704 -159067649 - L1PA6 LINE L1 -49 6105 377 368 283 184 30 chr1 83597755 83598091 -159066262 + L2 LINE L2 2220 2607 -707 7936 174 15 37 chr1 83600059 83602256 -159062097 - L1P5 LINE L1 -495 5656 3512 21 0 0 0 chr1 83602948 83602969 -159061384 + AT_rich Low_complexity Low_complexity 1 21 0 192 309 0 0 chr1 83604878 83604920 -159059433 + L2 LINE L2 3210 3251 -21 792 267 22 9 chr1 83604930 83605155 -159059198 - LTR16C LTR ERVL 0 491 264 508 325 35 31 chr1 83605495 83605750 -159058603 - MIR SINE MIR 0 262 7 1231 171 63 38 chr1 83606286 83606602 -159057751 + MER33 DNA MER1_type 1 324 0 1571 233 66 37 chr1 83606676 83607168 -159057185 - MER20B DNA MER1_type 0 783 270 2003 138 29 3 chr1 83607168 83607516 -159056837 - L1MA4 LINE L1 -9 6291 5935 1571 233 66 37 chr1 83607516 83607615 -159056738 - MER20B DNA MER1_type -513 270 175 1090 237 9 0 chr1 83607621 83607845 -159056508 + MLT1F1 LTR MaLR 339 564 -3 258 81 0 0 chr1 83607977 83608014 -159056339 + (TATG)n Simple_repeat Simple_repeat 2 38 0 2268 120 23 0 chr1 83608014 83608364 -159055989 - L1PB1 LINE L1 -3 6864 6507 610 51 92 10 chr1 83608379 83608775 -159055578 + (TA)n Simple_repeat Simple_repeat 1 428 0 13723 202 37 13 chr1 83608779 83608847 -159055506 - L1PB1 LINE L1 -360 6507 6442 2431 137 3 16 chr1 83608847 83609227 -159055126 + THE1C LTR MaLR 1 375 0 9544 124 36 44 chr1 83609228 83610819 -159053534 + THE1C-int LTR MaLR 2 1580 0 2271 128 5 46 chr1 83610819 83611210 -159053143 + THE1C LTR MaLR 1 375 0 13723 202 37 13 chr1 83611210 83616200 -159048153 - L1PB1 LINE L1 -424 6443 1311 940 128 74 0 chr1 83616202 83616351 -159048002 - L1PB1 LINE L1 -5708 1155 996 1281 297 141 21 chr1 83616880 83617858 -159046495 + HERVL LTR ERVL 2414 3522 -1963 523 276 70 25 chr1 83618106 83618471 -159045882 + HERVL LTR ERVL 3838 4292 -1234 1307 261 112 28 chr1 83618588 83619060 -159045293 - LTR33 LTR ERVL -9 512 1 507 286 108 83 chr1 83619612 83620015 -159044338 - L2 LINE L2 -1 3271 2854 2569 52 0 7 chr1 83620015 83620324 -159044029 + AluY SINE Alu 1 307 -4 507 286 108 83 chr1 83620324 83620453 -159043900 - L2 LINE L2 -418 2854 2730 297 259 0 0 chr1 83621163 83621217 -159043136 + MIR SINE MIR 1 54 -208 24 53 0 0 chr1 83622223 83622261 -159042092 + AT_rich Low_complexity Low_complexity 1 38 0 3046 187 32 82 chr1 83622589 83623483 -159040870 + L1MA6 LINE L1 5464 6177 -1 21 36 0 0 chr1 83623483 83623511 -159040842 + AT_rich Low_complexity Low_complexity 1 28 0 494 250 7 1 chr1 83624510 83624623 -159039730 - MLT1G LTR MaLR -448 119 3 195 42 0 0 chr1 83624642 83624666 -159039687 + (T)n Simple_repeat Simple_repeat 1 24 0 243 296 20 10 chr1 83624990 83625088 -159039265 - MLT1F-int LTR MaLR -1269 102 4 439 238 113 14 chr1 83625099 83625369 -159038984 - MLT1F LTR MaLR -8 534 176 22 56 0 0 chr1 83625538 83625574 -159038779 + AT_rich Low_complexity Low_complexity 1 36 0 1623 190 0 3 chr1 83625578 83625862 -159038491 - AluJb SINE Alu -21 291 9 211 28 56 0 chr1 83626232 83626268 -159038085 + (CAA)n Simple_repeat Simple_repeat 2 39 0 22 70 0 0 chr1 83627037 83627080 -159037273 + AT_rich Low_complexity Low_complexity 1 43 0 408 210 140 0 chr1 83627157 83627257 -159037096 - MIR SINE MIR -63 199 86 25 0 0 0 chr1 83627417 83627442 -159036911 + AT_rich Low_complexity Low_complexity 1 25 0 2275 105 0 22 chr1 83628014 83628327 -159036026 + AluSc SINE Alu 1 306 -3 264 30 0 0 chr1 83630390 83630423 -159033930 + (T)n Simple_repeat Simple_repeat 1 33 0 2907 158 19 43 chr1 83630786 83631349 -159033004 - MER44D DNA MER2_type 0 605 1 2328 102 0 0 chr1 83631516 83631819 -159032534 - AluSg SINE Alu -6 304 2 1094 120 55 11 chr1 83632069 83632252 -159032101 + L1PA6 LINE L1 5960 6150 -4 288 0 0 0 chr1 83632580 83632612 -159031741 + (TG)n Simple_repeat Simple_repeat 2 33 0 438 306 0 0 chr1 83633957 83634068 -159030285 - MER94 DNA DNA 0 134 24 226 157 118 0 chr1 83634086 83634137 -159030216 + L2 LINE L2 2992 3048 -224 1286 219 49 12 chr1 83634228 83634557 -159029796 + MER58B DNA MER1_type 1 341 0 2607 35 0 13 chr1 83635011 83635324 -159029029 - AluY SINE Alu -2 309 1 21 36 0 0 chr1 83637222 83637250 -159027103 + AT_rich Low_complexity Low_complexity 1 28 0 380 313 7 0 chr1 83637269 83637413 -159026940 + L1ME LINE L1 5598 5742 -379 1277 222 67 7 chr1 83637453 83637723 -159026630 + AluJo SINE Alu 6 291 -21 25 0 0 0 chr1 83637729 83637754 -159026599 + AT_rich Low_complexity Low_complexity 1 25 0 423 290 74 32 chr1 83638411 83638780 -159025573 - MLT1L LTR MaLR 0 615 195 29 60 0 0 chr1 83639281 83639331 -159025022 + AT_rich Low_complexity Low_complexity 1 50 0 2397 87 0 0 chr1 83639403 83639703 -159024650 - AluSx SINE Alu -12 300 1 508 308 177 36 chr1 83639889 83640239 -159024114 - L2 LINE L2 -21 3292 2880 2143 125 22 35 chr1 83640239 83640608 -159023745 + THE1B LTR MaLR 1 364 0 508 308 177 36 chr1 83640608 83640647 -159023706 - L2 LINE L2 -433 2880 2848 1073 198 146 73 chr1 83640648 83641017 -159023336 + MSTD LTR MaLR 1 396 0 206 339 217 18 chr1 83643759 83644437 -159019916 + L2 LINE L2 1983 2795 -519 325 157 14 14 chr1 83644529 83644599 -159019754 + MER116 DNA Mariner 7 76 -4 266 356 142 39 chr1 83644693 83644926 -159019427 + L2 LINE L2 3016 3272 0 1638 207 19 11 chr1 83645877 83646244 -159018109 - MLT1A2 LTR MaLR 0 374 5 1459 201 4 4 chr1 83646381 83646644 -159017709 + AluJo SINE Alu 1 263 -49 540 0 0 0 chr1 83646657 83646717 -159017636 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 22 56 0 0 chr1 83647761 83647797 -159016556 + AT_rich Low_complexity Low_complexity 1 36 0 459 136 0 0 chr1 83649478 83649544 -159014809 - MLT1A1-int LTR MaLR -1301 70 5 1530 202 50 15 chr1 83649557 83649733 -159014620 - MLT1A1 LTR MaLR -11 354 186 279 0 0 0 chr1 83649733 83649764 -159014589 + (GA)n Simple_repeat Simple_repeat 2 32 0 1530 202 50 15 chr1 83649764 83649929 -159014424 - MLT1A1 LTR MaLR -179 186 1 1948 139 11 3 chr1 83650314 83650601 -159013752 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr1 83650996 83651023 -159013330 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 367 349 24 32 chr1 83651068 83651223 -159013130 + MIR3 SINE MIR 20 174 -34 5557 12 0 18 chr1 83651223 83651874 -159012479 - L1PA3 LINE L1 0 6155 5517 354 256 143 15 chr1 83653224 83653357 -159010996 - L2 LINE L2 -5 3308 3159 1489 144 91 21 chr1 83653743 83654028 -159010325 + MER44D DNA MER2_type 1 575 -34 1218 90 58 5 chr1 83654053 83654241 -159010112 - Tigger4(Zombi) DNA MER2_type -3 2728 2531 642 176 9 0 chr1 83654249 83654357 -159009996 - Tigger4(Zombi) DNA MER2_type -2613 118 10 252 0 0 0 chr1 83654371 83654399 -159009954 + (TG)n Simple_repeat Simple_repeat 2 29 0 213 122 41 20 chr1 83654408 83654457 -159009896 + (TA)n Simple_repeat Simple_repeat 1 50 0 1029 165 11 0 chr1 83657237 83657413 -159006940 + L1PA15 LINE L1 5980 6157 -8 366 222 157 60 chr1 83657430 83657615 -159006738 + LTR16A LTR ERVL 248 450 0 190 396 44 0 chr1 83657632 83657723 -159006630 + L2 LINE L2 2962 3056 -216 225 273 23 0 chr1 83658374 83658462 -159005891 - L1MC4 LINE L1 -1339 6703 6614 2267 309 121 43 chr1 83658540 83660393 -159003960 + L2 LINE L2 1288 3288 -25 615 256 32 13 chr1 83660878 83661034 -159003319 + L3 LINE CR1 1418 1576 -1 409 323 40 16 chr1 83661835 83661959 -159002394 - L2 LINE L2 -9 3263 3137 837 321 109 15 chr1 83662159 83662570 -159001783 + L2 LINE L2 2864 3313 0 388 353 85 36 chr1 83662644 83663007 -159001346 - L2 LINE L2 -657 2657 2277 249 303 120 48 chr1 83663297 83663505 -159000848 + L2 LINE L2 2715 2937 -377 2046 122 7 0 chr1 83664441 83664727 -158999626 - AluSx SINE Alu -24 288 1 21 0 0 0 chr1 83666702 83666723 -158997630 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 83667945 83667970 -158996383 + AT_rich Low_complexity Low_complexity 1 25 0 1370 191 74 4 chr1 83669492 83669748 -158994605 + AluSx SINE Alu 1 274 -38 409 146 36 18 chr1 83669752 83669862 -158994491 + GA-rich Low_complexity Low_complexity 1 112 0 304 355 0 9 chr1 83670149 83670259 -158994094 + MER5A DNA MER1_type 80 188 -1 193 200 120 0 chr1 83670507 83670557 -158993796 - MIR SINE MIR -10 252 197 549 262 21 28 chr1 83670700 83670845 -158993508 - MIR SINE MIR -106 156 13 23 0 0 0 chr1 83671438 83671461 -158992892 + AT_rich Low_complexity Low_complexity 1 23 0 331 267 34 103 chr1 83672627 83672643 -158991710 + L2 LINE L2 3122 3138 -134 2214 175 51 59 chr1 83672643 83673152 -158991201 + MLT1D LTR MaLR 1 505 0 331 267 34 103 chr1 83673152 83673281 -158991072 + L2 LINE L2 3138 3257 -15 336 354 27 20 chr1 83673542 83673689 -158990664 + MIR SINE MIR 3 150 -112 221 57 29 0 chr1 83675892 83675927 -158988426 + (GA)n Simple_repeat Simple_repeat 1 36 0 237 33 0 0 chr1 83675956 83675986 -158988367 + (TG)n Simple_repeat Simple_repeat 2 31 0 371 21 21 0 chr1 83676408 83676456 -158987897 + (TC)n Simple_repeat Simple_repeat 2 50 0 559 226 63 118 chr1 83676951 83677344 -158987009 + L1ME LINE L1 985 1345 -5071 1794 141 48 10 chr1 83677344 83677634 -158986719 + AluSx SINE Alu 1 301 -11 559 226 63 118 chr1 83677634 83677748 -158986605 + L1ME LINE L1 1345 1464 -4952 362 243 92 35 chr1 83677745 83677918 -158986435 + L1ME LINE L1 1687 1915 -4557 * 955 164 32 196 chr1 83678302 83678736 -158985617 + MLT1A1 LTR MaLR 1 363 -2 537 242 89 65 chr1 83678762 83678891 -158985462 + L1ME LINE L1 2420 2544 -3882 2134 136 0 3 chr1 83678891 83679200 -158985153 + AluSg SINE Alu 3 310 0 537 242 89 65 chr1 83679200 83679307 -158985046 + L1ME LINE L1 2544 2647 -3779 548 65 26 0 chr1 83679307 83679384 -158984969 - MADE1 DNA Mariner 0 80 2 537 242 89 65 chr1 83679384 83679593 -158984760 + L1ME LINE L1 2647 2877 -3549 281 246 45 37 chr1 83679601 83679735 -158984618 + L1ME LINE L1 5179 5313 -1113 189 0 0 0 chr1 83680142 83680163 -158984190 + (GA)n Simple_repeat Simple_repeat 2 22 0 1448 132 22 0 chr1 83680470 83680698 -158983655 - L1PA11 LINE L1 -1 6173 5941 1092 284 105 4 chr1 83680728 83681193 -158983160 + L1ME LINE L1 5578 6089 -361 234 200 200 0 chr1 83681294 83681374 -158982979 - L1ME3A LINE L1 -224 5946 5851 615 154 19 103 chr1 83681670 83681826 -158982527 + L2 LINE L2 3171 3313 0 2757 50 6 0 chr1 83682628 83682970 -158981383 + LTR14A LTR ERVK 1 344 0 221 370 63 11 chr1 83683575 83683755 -158980598 + MIR SINE MIR 16 206 -56 6411 130 70 29 chr1 83683861 83684218 -158980135 + Tigger3b DNA MER2_type 2 343 -2685 2073 119 10 3 chr1 83684218 83684512 -158979841 + AluSx SINE Alu 10 305 -7 6411 130 70 29 chr1 83684512 83685331 -158979022 + Tigger3b DNA MER2_type 343 1226 -5 260 53 26 0 chr1 83686284 83686322 -158978031 + (CA)n Simple_repeat Simple_repeat 2 40 0 1342 158 53 0 chr1 83686708 83686974 -158977379 - L1MA9 LINE L1 0 6312 6033 13283 202 42 34 chr1 83686990 83687503 -158976850 - L1MA7 LINE L1 -2 6525 6018 2021 138 3 22 chr1 83687503 83687821 -158976532 - AluJb SINE Alu 0 312 1 13283 202 42 34 chr1 83687821 83688619 -158975734 - L1MA7 LINE L1 -509 6018 5228 804 153 0 8 chr1 83688619 83688750 -158975603 - FLAM_C SINE Alu -3 130 1 13283 202 42 34 chr1 83688750 83692465 -158971888 - L1MA7 LINE L1 -1299 5228 1359 2676 118 34 7 chr1 83692465 83692882 -158971471 - MSTA LTR MaLR 0 428 1 13283 202 42 34 chr1 83692882 83693263 -158971090 - L1MA7 LINE L1 -5168 1359 983 295 189 54 81 chr1 83693262 83693410 -158970943 - L1M1 LINE L1 -3963 3602 3459 * 2342 111 0 0 chr1 83693443 83693776 -158970577 - L1PA12 LINE L1 -1 6167 5835 1695 75 13 0 chr1 83693776 83694015 -158970338 + L1PA12 LINE L1 5597 5838 -325 4038 266 40 13 chr1 83694055 83696233 -158968120 - L1M4c LINE L1 -4144 1892 1 757 274 6 6 chr1 83696540 83696719 -158967634 + MER8 DNA MER2_type 1 179 -60 284 313 0 0 chr1 83696694 83696758 -158967595 + MER2 DNA MER2_type 282 345 0 * 230 0 33 0 chr1 83696921 83696951 -158967402 + (CA)n Simple_repeat Simple_repeat 1 31 0 1719 179 0 17 chr1 83697289 83697590 -158966763 - AluJo SINE Alu -16 296 1 30 69 0 0 chr1 83697938 83697996 -158966357 + AT_rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr1 83698015 83698043 -158966310 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr1 83699476 83699523 -158964830 + AT_rich Low_complexity Low_complexity 1 47 0 644 238 54 16 chr1 83699546 83699731 -158964622 + MIR SINE MIR 71 262 0 2207 129 0 0 chr1 83700187 83700490 -158963863 + AluSx SINE Alu 1 303 -9 927 341 19 49 chr1 83701402 83702030 -158962323 + L1PA16 LINE L1 2 610 -6177 338 321 6 19 chr1 83702028 83702187 -158962166 + L1PA16 LINE L1 1363 1519 -5268 * 3608 239 36 5 chr1 83703041 83704086 -158960267 + L1PA16 LINE L1 1510 2612 -4185 40162 37 23 2 chr1 83704088 83705340 -158959013 + L1PA2 LINE L1 4 1228 -4927 8327 54 1 0 chr1 83705340 83706305 -158958048 + LTR5 LTR ERVK 1 966 -3 40162 37 23 2 chr1 83706305 83711103 -158953250 + L1PA2 LINE L1 1228 6155 0 10747 200 22 43 chr1 83711121 83711361 -158952992 + L1PA16 LINE L1 2589 2832 -3985 2416 64 3 0 chr1 83711361 83711658 -158952695 + AluY SINE Alu 7 304 -7 10747 200 22 43 chr1 83711658 83714728 -158949625 + L1PA16 LINE L1 2832 5777 -1040 1701 183 21 7 chr1 83714728 83715017 -158949336 + AluJo SINE Alu 1 293 -19 10747 200 22 43 chr1 83715017 83716029 -158948324 + L1PA16 LINE L1 5777 6808 -9 200 216 0 0 chr1 83716207 83716244 -158948109 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 303 377 19 0 chr1 83716587 83716741 -158947612 - L2 LINE L2 -609 2705 2549 1088 283 119 21 chr1 83716763 83717275 -158947078 - L2 LINE L2 -992 2322 1761 228 259 155 9 chr1 83717337 83717453 -158946900 - L2 LINE L2 -1689 1625 1493 669 105 0 35 chr1 83718514 83718628 -158945725 - L1MA7 LINE L1 -7 6284 6175 444 164 0 0 chr1 83718632 83718721 -158945632 + L1MA7 LINE L1 6078 6155 -136 541 235 148 0 chr1 83718834 83718993 -158945360 - MER5A DNA MER1_type 0 189 4 654 248 67 75 chr1 83720409 83720663 -158943690 - MIR SINE MIR 0 262 11 210 304 104 22 chr1 83721301 83721436 -158942917 - MIR SINE MIR -34 228 83 358 313 133 44 chr1 83722191 83722490 -158941863 + L1MC4a LINE L1 7331 7655 -153 2274 200 4 10 chr1 83722709 83723190 -158941163 + L1PA16 LINE L1 5664 6141 -25 27 0 0 0 chr1 83723217 83723244 -158941109 + AT_rich Low_complexity Low_complexity 1 27 0 698 335 119 34 chr1 83724089 83724501 -158939852 - L2 LINE L2 0 3272 2826 200 290 160 10 chr1 83725085 83725185 -158939168 + MIR SINE MIR 35 149 -59 29830 109 8 59 chr1 83725251 83731718 -158932635 + L1PA7 LINE L1 12 6146 -8 1207 135 113 0 chr1 83731858 83732087 -158932266 + L1PA16 LINE L1 5801 6055 -111 386 230 0 0 chr1 83732185 83732272 -158932081 + L1PA16 LINE L1 6057 6143 -23 49 52 0 0 chr1 83732457 83732534 -158931819 + AT_rich Low_complexity Low_complexity 1 77 0 211 118 0 39 chr1 83732767 83732818 -158931535 + (CATA)n Simple_repeat Simple_repeat 3 51 0 380 280 64 16 chr1 83733681 83733806 -158930547 - L2 LINE L2 -1 3271 3141 373 247 52 21 chr1 83735040 83735137 -158929216 + L2 LINE L2 3172 3271 -1 364 224 61 0 chr1 83735232 83735330 -158929023 - MER117 DNA MER1_type -42 155 52 3758 183 18 3 chr1 83735458 83736140 -158928213 + MER44D DNA MER2_type 1 692 -13 498 170 0 0 chr1 83737124 83737218 -158927135 + (CATA)n Simple_repeat Simple_repeat 3 96 0 931 309 71 46 chr1 83737265 83737969 -158926384 - L2 LINE L2 0 3272 2552 2077 146 25 22 chr1 83738012 83738375 -158925978 + THE1B LTR MaLR 1 364 0 10996 98 6 3 chr1 83738375 83739941 -158924412 + THE1B-int LTR MaLR 1 1571 -9 2190 143 19 22 chr1 83739945 83740309 -158924044 + THE1B LTR MaLR 2 364 0 295 316 124 50 chr1 83740325 83740721 -158923632 - L2 LINE L2 -821 2493 2069 616 294 144 51 chr1 83741085 83741643 -158922710 - L2 LINE L2 -3 3310 2692 623 302 120 7 chr1 83741686 83741977 -158922376 + L1MEc LINE L1 464 787 -6038 1958 260 73 39 chr1 83741988 83742789 -158921564 + L1MEc LINE L1 1502 2505 -4320 2155 165 8 6 chr1 83742789 83743153 -158921200 + MLT1A1 LTR MaLR 1 365 0 1958 260 73 39 chr1 83743153 83743440 -158920913 + L1MEc LINE L1 2505 2781 -4044 220 338 33 73 chr1 83745137 83745288 -158919065 + L2 LINE L2 3127 3271 -1 263 316 56 26 chr1 83745578 83745721 -158918632 - MIR SINE MIR -78 130 12 207 0 0 0 chr1 83747151 83747174 -158917179 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1872 111 4 4 chr1 83747176 83747429 -158916924 - AluSx SINE Alu -24 288 36 203 267 33 17 chr1 83749255 83749315 -158915038 + MER5B DNA MER1_type 76 136 -42 765 272 61 92 chr1 83749422 83749996 -158914357 + LTR67 LTR ERVL 2 557 0 696 233 138 9 chr1 83750455 83750687 -158913666 + MIR SINE MIR 1 262 0 900 251 125 18 chr1 83750753 83751088 -158913265 + MLT1I LTR MaLR 39 409 0 285 327 44 18 chr1 83751258 83751371 -158912982 + L2 LINE L2 3156 3271 -1 351 319 47 35 chr1 83751616 83751785 -158912568 - MIR3 SINE MIR -3 205 35 266 324 46 19 chr1 83751861 83751969 -158912384 - MER5B DNA MER1_type 0 178 68 294 292 97 0 chr1 83752348 83752377 -158911976 - L2 LINE L2 -4 3309 3284 2001 139 98 25 chr1 83752377 83752773 -158911580 - MSTB LTR MaLR -1 425 1 294 292 97 0 chr1 83752773 83752856 -158911497 - L2 LINE L2 -29 3284 3186 1258 169 45 124 chr1 83752915 83753311 -158911042 + MLT1A1 LTR MaLR 1 365 0 347 252 89 24 chr1 83753478 83753601 -158910752 - MER5A DNA MER1_type -4 185 55 550 352 90 63 chr1 83755803 83756604 -158907749 + L2 LINE L2 1534 2375 -939 2059 147 33 22 chr1 83756604 83756964 -158907389 - THE1B LTR MaLR 0 364 1 550 352 90 63 chr1 83756964 83757273 -158907080 + L2 LINE L2 2375 2674 -640 221 314 52 57 chr1 83757377 83757606 -158906747 + L2 LINE L2 2685 2912 -402 258 105 0 0 chr1 83758718 83758756 -158905597 + (CA)n Simple_repeat Simple_repeat 1 38 0 5739 140 30 18 chr1 83759257 83760277 -158904076 - Tigger3b DNA MER2_type -198 1033 1 581 206 131 25 chr1 83761010 83761170 -158903183 - L2 LINE L2 -1314 2000 1824 322 308 116 18 chr1 83761526 83761750 -158902603 + L1MEd LINE L1 561 806 -5313 1580 212 45 25 chr1 83761842 83762223 -158902130 + MSTD LTR MaLR 1 425 -3 268 234 31 70 chr1 83762232 83762296 -158902057 + L1MEd LINE L1 895 953 -5166 718 197 8 0 chr1 83762296 83762423 -158901930 + FLAM_A SINE Alu 2 129 -4 268 234 31 70 chr1 83762423 83762486 -158901867 + L1MEd LINE L1 953 1017 -5102 8147 153 20 7 chr1 83762586 83762778 -158901575 + L1MA2 LINE L1 3796 3984 -2320 2264 111 0 3 chr1 83762778 83763085 -158901268 + AluSg SINE Alu 1 306 -4 8147 153 20 7 chr1 83763085 83765024 -158899329 + L1MA2 LINE L1 3984 5946 -358 965 312 72 22 chr1 83765169 83765798 -158898555 - L2 LINE L2 -82 3231 2572 225 151 41 27 chr1 83765976 83766049 -158898304 + (TAA)n Simple_repeat Simple_repeat 3 76 0 22 0 0 0 chr1 83766172 83766194 -158898159 + AT_rich Low_complexity Low_complexity 1 22 0 528 246 39 56 chr1 83766302 83766481 -158897872 - MER20B DNA MER1_type -607 176 1 21 71 0 0 chr1 83766599 83766641 -158897712 + AT_rich Low_complexity Low_complexity 1 42 0 220 274 39 69 chr1 83767076 83767178 -158897175 - MIR SINE MIR -5 257 159 429 146 218 9 chr1 83767320 83767430 -158896923 - MER31A LTR ERV1 0 485 353 1512 193 67 80 chr1 83767431 83767893 -158896460 + MER31B LTR ERV1 1 456 -10 847 268 138 33 chr1 83768014 83768148 -158896205 + L1M4 LINE L1 2870 2989 -3157 303 213 12 12 chr1 83768148 83768228 -158896125 - MER116 DNA Mariner 0 80 1 847 268 138 33 chr1 83768228 83768878 -158895475 + L1M4 LINE L1 2989 3736 -2410 2140 138 7 0 chr1 83769098 83769403 -158894950 + AluSx SINE Alu 1 307 -5 408 155 0 0 chr1 83769403 83769474 -158894879 + GA-rich Low_complexity Low_complexity 1 71 0 247 158 0 0 chr1 83769474 83769512 -158894841 + polypurine Low_complexity Low_complexity 1 38 0 3951 36 2 0 chr1 83769624 83770071 -158894282 - LTR5 LTR ERVK -521 448 1 410 69 10 167 chr1 83770071 83770166 -158894187 - SVA Other Other -449 937 857 16254 10 0 0 chr1 83770166 83771980 -158892373 - HERVK LTR ERVK -95 7148 5335 * 22048 23 0 1 chr1 83771964 83774507 -158889846 - HERVK LTR ERVK -4701 2542 1 8243 53 1 0 chr1 83774510 83775475 -158888878 - LTR5 LTR ERVK -3 966 1 3630 85 12 0 chr1 83775475 83776016 -158888337 - L1P LINE L1 -4751 1395 720 14596 151 45 16 chr1 83776161 83778080 -158886273 - L1 LINE L1 -2362 5203 3342 2278 122 0 0 chr1 83778080 83778391 -158885962 - AluY SINE Alu 0 311 1 14596 151 45 16 chr1 83778391 83778889 -158885464 - L1 LINE L1 -4223 3342 2860 2552 56 3 0 chr1 83778889 83779192 -158885161 - AluY SINE Alu -7 304 1 14596 151 45 16 chr1 83779192 83780688 -158883665 - L1 LINE L1 -4705 2860 1175 195 228 18 18 chr1 83780909 83780966 -158883387 + MIR SINE MIR 147 203 -59 401 281 46 20 chr1 83781161 83781357 -158882996 - L1ME4a LINE L1 -253 5868 5668 478 158 146 0 chr1 83782413 83782495 -158881858 + FLAM_A SINE Alu 21 114 -28 251 289 35 26 chr1 83782678 83782792 -158881561 + MIR SINE MIR 50 164 -98 642 251 37 16 chr1 83783035 83783222 -158881131 + L1ME1 LINE L1 5967 6157 -9 329 313 214 5 chr1 83783482 83783683 -158880670 + L2 LINE L2 2162 2404 -910 292 284 119 0 chr1 83783679 83783788 -158880565 - L2 LINE L2 -2 3311 3190 * 418 348 118 56 chr1 83784214 83784588 -158879765 + L2 LINE L2 2830 3226 -46 223 317 89 72 chr1 83784587 83784669 -158879684 + L2 LINE L2 2795 2874 -440 * 2175 112 3 0 chr1 83784669 83784964 -158879389 - AluSx SINE Alu -16 296 1 223 317 89 72 chr1 83784964 83785061 -158879292 + L2 LINE L2 2874 2977 -337 13917 223 24 18 chr1 83786024 83790582 -158873771 - L1PA16 LINE L1 -6 6863 2172 292 29 0 0 chr1 83790582 83790616 -158873737 + U2 snRNA snRNA 1 34 -154 13917 223 24 18 chr1 83790616 83790875 -158873478 - L1PA16 LINE L1 -4697 2172 1916 9401 180 72 15 chr1 83790880 83792529 -158871824 - L1PA16 LINE L1 -5037 1812 59 2223 96 0 0 chr1 83792529 83792809 -158871544 - AluSc SINE Alu -19 290 11 9401 180 72 15 chr1 83792809 83792872 -158871481 - L1PA16 LINE L1 -6790 59 1 859 318 63 46 chr1 83793404 83793981 -158870372 - L2 LINE L2 -194 3078 2483 204 233 0 0 chr1 83794437 83794480 -158869873 - L2 LINE L2 -879 2435 2393 32 26 0 0 chr1 83794504 83794543 -158869810 + AT_rich Low_complexity Low_complexity 1 39 0 219 321 107 27 chr1 83794627 83794739 -158869614 - L3 LINE CR1 -1043 534 414 330 26 0 0 chr1 83795851 83795890 -158868463 + (TG)n Simple_repeat Simple_repeat 2 40 0 2344 299 119 2 chr1 83795893 83796967 -158867386 - L2 LINE L2 -41 3272 2079 202 153 34 34 chr1 83796998 83797057 -158867296 + (TTATA)n Simple_repeat Simple_repeat 5 63 0 2253 163 60 0 chr1 83797079 83797479 -158866874 - MSTB LTR MaLR -2 424 1 1049 286 45 63 chr1 83797527 83798034 -158866319 + L2 LINE L2 1269 1766 -1548 423 15 76 0 chr1 83798034 83798100 -158866253 + CT-rich Low_complexity Low_complexity 4 74 0 1070 123 0 6 chr1 83798203 83798374 -158865979 + L1MA2 LINE L1 6135 6304 0 1494 156 16 44 chr1 83798393 83798708 -158865645 - MER33 DNA MER1_type -18 306 1 1540 178 77 0 chr1 83799035 83799321 -158865032 + AluJo SINE Alu 3 310 -2 208 301 78 103 chr1 83799853 83800301 -158864052 - L2 LINE L2 -105 3167 2731 336 48 0 0 chr1 83800779 83800821 -158863532 + (CA)n Simple_repeat Simple_repeat 2 43 0 285 373 42 23 chr1 83801135 83801352 -158863001 - L3b LINE CR1 -223 1360 1140 621 293 12 6 chr1 83805133 83805297 -158859056 + MIR SINE MIR 2 166 -96 2178 117 0 0 chr1 83805299 83805589 -158858764 + AluSg SINE Alu 1 290 -20 44155 41 1 4 chr1 83805658 83811826 -158852527 + L1PA3 LINE L1 2 6152 -3 313 275 12 12 chr1 83811950 83812030 -158852323 + MIR3 SINE MIR 111 190 -18 195 217 43 0 chr1 83812423 83812469 -158851884 - L2 LINE L2 0 3272 3225 226 94 0 0 chr1 83813078 83813110 -158851243 + MIR3 SINE MIR 139 170 -38 1884 119 175 22 chr1 83813118 83813489 -158850864 - MSTA LTR MaLR 0 428 1 9083 138 26 36 chr1 83813489 83815082 -158849271 - MSTA-int LTR MaLR 0 1580 3 1720 133 193 17 chr1 83815087 83815449 -158848904 - MSTA LTR MaLR -2 426 1 1159 109 0 23 chr1 83816011 83816186 -158848167 - MSTA-int LTR MaLR -214 1366 1196 395 327 104 58 chr1 83816534 83816861 -158847492 - L2 LINE L2 -93 3220 2879 1659 184 41 29 chr1 83817046 83817187 -158847166 - MER7A DNA MER2_type -2694 344 206 3564 140 8 0 chr1 83817187 83817710 -158846643 + MER1A DNA MER1_type 1 527 0 1659 184 41 29 chr1 83817710 83817910 -158846443 - MER7A DNA MER2_type -2832 206 1 24 32 0 0 chr1 83818070 83818101 -158846252 + AT_rich Low_complexity Low_complexity 1 31 0 2120 99 4 0 chr1 83818255 83818527 -158845826 - AluSp SINE Alu -24 289 17 201 147 0 0 chr1 83818868 83818902 -158845451 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 24 53 0 0 chr1 83819427 83819465 -158844888 + AT_rich Low_complexity Low_complexity 1 38 0 1009 277 182 14 chr1 83820378 83820861 -158843492 + MLT1L LTR MaLR 36 599 -16 291 140 0 0 chr1 83821097 83821147 -158843206 + (CA)n Simple_repeat Simple_repeat 1 50 0 339 260 77 19 chr1 83821759 83821863 -158842490 + L2 LINE L2 3204 3313 0 183 351 35 0 chr1 83821894 83821951 -158842402 - L2 LINE L2 -78 3194 3136 284 346 101 24 chr1 83822265 83822641 -158841712 + MLT1K LTR MaLR 184 588 0 285 261 0 11 chr1 83822789 83822881 -158841472 + L1M4 LINE L1 2440 2530 -3616 338 245 88 48 chr1 83822957 83823104 -158841249 + HAL1 LINE L1 1512 1664 -843 422 313 12 6 chr1 83823127 83823290 -158841063 + L1M3d LINE L1 767 930 -5723 385 271 42 34 chr1 83823289 83823407 -158840946 + L1M3d LINE L1 846 964 -5689 * 1043 180 119 8 chr1 83823409 83823710 -158840643 + MSTD LTR MaLR 1 396 0 1791 232 130 51 chr1 83823713 83824568 -158839785 + L1MA9 LINE L1 216 1002 -5651 2407 95 0 0 chr1 83824568 83824874 -158839479 + AluY SINE Alu 1 306 -5 1791 232 130 51 chr1 83824874 83825149 -158839204 + L1MA9 LINE L1 1002 1998 -4655 21 0 0 0 chr1 83825180 83825201 -158839152 + AT_rich Low_complexity Low_complexity 1 21 0 1622 113 4 0 chr1 83825201 83825448 -158838905 - L1MA2 LINE L1 0 6304 6057 5372 176 13 25 chr1 83825452 83827170 -158837183 + L1MA9 LINE L1 5174 6868 -30 1805 177 29 37 chr1 83828301 83828563 -158835790 + MER7A DNA MER2_type 2 260 -2778 2172 131 0 37 chr1 83828563 83828913 -158835440 - MER1B DNA MER1_type 0 337 1 1805 177 29 37 chr1 83828913 83829000 -158835353 + MER7A DNA MER2_type 260 346 0 775 259 34 25 chr1 83829200 83829485 -158834868 + MLT1J1 LTR MaLR 1 323 -123 237 197 61 15 chr1 83829550 83829616 -158834737 + MLT1J1 LTR MaLR 358 426 -20 358 248 79 103 chr1 83829847 83830061 -158834292 + MLT1J1 LTR MaLR 238 446 0 427 361 46 33 chr1 83830197 83830438 -158833915 + MIR SINE MIR 2 245 -17 197 180 20 0 chr1 83831572 83831622 -158832731 + (CA)n Simple_repeat Simple_repeat 2 52 0 1414 41 0 0 chr1 83831951 83832123 -158832230 - L1PA4 LINE L1 -3 6152 5981 248 282 69 21 chr1 83832256 83832420 -158831933 + MIR SINE MIR 29 201 -61 1567 149 162 16 chr1 83832718 83833027 -158831326 + MSTA LTR MaLR 75 428 0 618 233 73 39 chr1 83833643 83833875 -158830478 + L1ME3A LINE L1 5931 6170 0 5086 185 29 16 chr1 83834231 83836292 -158828061 - L1PA16 LINE L1 -1 6165 4075 1125 172 60 5 chr1 83836300 83836515 -158827838 - AluJb SINE Alu -2 310 84 3086 247 1 4 chr1 83836516 83837237 -158827116 - L1PA16 LINE L1 -2067 4079 3361 2906 258 41 7 chr1 83837241 83838161 -158826192 + L1P LINE L1 2456 3407 -2739 251 298 144 19 chr1 83839080 83839184 -158825169 - L2 LINE L2 -19 3253 3137 2689 92 11 0 chr1 83839249 83839609 -158824744 - THE1B LTR MaLR 0 364 1 2464 67 0 3 chr1 83840256 83840568 -158823785 + AluY SINE Alu 1 311 0 28 48 0 0 chr1 83840928 83840970 -158823383 + AT_rich Low_complexity Low_complexity 1 42 0 200 295 98 16 chr1 83841301 83841423 -158822930 - MIR SINE MIR -108 154 23 22 35 0 0 chr1 83841565 83841594 -158822759 + AT_rich Low_complexity Low_complexity 1 29 0 332 276 211 13 chr1 83841907 83842063 -158822290 - L2 LINE L2 -5 3308 3122 447 305 42 36 chr1 83842356 83842523 -158821830 - MIR SINE MIR -62 200 33 1296 171 11 56 chr1 83843259 83843528 -158820825 - AluJo SINE Alu -43 269 13 4437 171 45 11 chr1 83844538 83845411 -158818942 - L1MA7 LINE L1 0 6291 5390 2467 51 0 16 chr1 83845628 83845939 -158818414 + AluY SINE Alu 1 306 -5 297 247 65 11 chr1 83846062 83846155 -158818198 + L2 LINE L2 3169 3266 -6 198 103 0 0 chr1 83846702 83846731 -158817622 + (GA)n Simple_repeat Simple_repeat 1 29 0 356 235 49 0 chr1 83847597 83847699 -158816654 + L1ME4a LINE L1 5770 5876 -245 274 348 22 0 chr1 83847864 83847953 -158816400 + L2 LINE L2 3182 3272 0 327 291 66 7 chr1 83847969 83848120 -158816233 + L1ME4a LINE L1 5959 6118 -3 1336 182 37 24 chr1 83848126 83848422 -158815931 + L1MB7 LINE L1 5875 6174 -10 2147 122 0 0 chr1 83848671 83848966 -158815387 + AluSx SINE Alu 1 295 -17 628 141 0 0 chr1 83849637 83849729 -158814624 + FLAM_A SINE Alu 30 121 -21 198 305 51 34 chr1 83850791 83850909 -158813444 + MIR SINE MIR 97 216 -46 197 200 0 0 chr1 83852401 83852436 -158811917 - L2 LINE L2 -12 3301 3267 * 221 176 122 27 chr1 83852411 83852485 -158811868 - MIR SINE MIR -16 246 166 230 333 11 33 chr1 83852645 83852735 -158811618 + MIR SINE MIR 29 116 -146 1831 116 0 30 chr1 83852747 83853015 -158811338 - AluSq SINE Alu -53 260 1 1026 199 23 14 chr1 83853109 83853325 -158811028 + MER20 DNA MER1_type 1 218 -1 2076 146 128 10 chr1 83853415 83853798 -158810555 + MSTA LTR MaLR 1 428 0 238 309 36 0 chr1 83854042 83854152 -158810201 + L1ME LINE L1 5755 5868 -253 27 0 0 0 chr1 83854333 83854360 -158809993 + AT_rich Low_complexity Low_complexity 1 27 0 973 265 78 96 chr1 83854402 83855357 -158808996 + L1MC4 LINE L1 7098 8034 -8 238 170 0 21 chr1 83855746 83855793 -158808560 + MLT1J2 LTR MaLR 67 112 -338 419 237 10 26 chr1 83855874 83856004 -158808349 + MLT1J2 LTR MaLR 256 431 -19 2254 106 3 3 chr1 83856246 83856558 -158807795 + AluSx SINE Alu 1 312 0 505 253 11 0 chr1 83856558 83856736 -158807617 + GA-rich Low_complexity Low_complexity 1 180 0 26 0 0 0 chr1 83857728 83857754 -158806599 + AT_rich Low_complexity Low_complexity 1 26 0 389 315 126 58 chr1 83857954 83858566 -158805787 + L2 LINE L2 2616 3269 -3 389 22 0 0 chr1 83859455 83859501 -158804852 - AluY SINE Alu -12 288 243 390 309 7 7 chr1 83860504 83860643 -158803710 - MER103 DNA DNA -2 164 26 24 0 0 0 chr1 83860662 83860686 -158803667 + AT_rich Low_complexity Low_complexity 1 24 0 647 213 168 0 chr1 83860884 83861039 -158803314 - MER5A DNA MER1_type -2 187 7 874 188 6 42 chr1 83861365 83861530 -158802823 + MER5A DNA MER1_type 1 159 -30 231 255 0 0 chr1 83861539 83861590 -158802763 + MIR3 SINE MIR 151 201 -7 601 279 23 36 chr1 83861640 83861859 -158802494 + MIR SINE MIR 19 234 -28 976 293 10 17 chr1 83861861 83862158 -158802195 + L2 LINE L2 3008 3302 -11 913 137 0 0 chr1 83862159 83862290 -158802063 + FLAM_C SINE Alu 1 131 -12 1758 166 145 20 chr1 83862830 83863222 -158801131 + MER65A LTR ERV1 5 445 0 325 247 0 0 chr1 83863479 83863552 -158800801 - MER117 DNA MER1_type -119 78 6 286 154 0 15 chr1 83863638 83863703 -158800650 + MER65A LTR ERV1 1 64 -381 893 126 0 15 chr1 83865326 83865461 -158798892 + FLAM_C SINE Alu 1 133 0 328 322 35 29 chr1 83865544 83865715 -158798638 + MIR SINE MIR 56 227 -35 2541 55 0 10 chr1 83865717 83866029 -158798324 + AluY SINE Alu 1 309 -2 33 0 0 0 chr1 83866059 83866092 -158798261 + AT_rich Low_complexity Low_complexity 1 33 0 2813 7 0 0 chr1 83866131 83866435 -158797918 + AluYa5 SINE Alu 1 304 -7 341 318 113 20 chr1 83867204 83867355 -158796998 - L2 LINE L2 -5 3267 3103 363 229 24 0 chr1 83867410 83867493 -158796860 - U6 snRNA snRNA 0 107 23 262 207 223 66 chr1 83869550 83869671 -158794682 - MIR SINE MIR 0 262 123 180 379 68 38 chr1 83870165 83870297 -158794056 - L2 LINE L2 0 3272 3137 23 33 0 0 chr1 83870752 83870782 -158793571 + AT_rich Low_complexity Low_complexity 1 30 0 288 179 45 15 chr1 83871482 83871549 -158792804 - L1ME4a LINE L1 -94 6027 5959 640 158 8 39 chr1 83871557 83871684 -158792669 - L1MD3 LINE L1 -10 7985 7863 289 236 169 15 chr1 83871696 83871891 -158792462 - L1ME4a LINE L1 -181 5940 5716 330 296 86 0 chr1 83871899 83872061 -158792292 - L1ME4a LINE L1 -618 5503 5328 240 59 0 0 chr1 83872971 83873005 -158791348 + (TA)n Simple_repeat Simple_repeat 1 34 0 345 220 18 0 chr1 83873014 83873110 -158791243 - L1MC4 LINE L1 -1339 6983 2003 3015 214 74 22 chr1 83873374 83873418 -158790935 - L1MC4 LINE L1 0 8042 8002 1660 168 75 49 chr1 83873418 83873804 -158790549 + MSTD LTR MaLR 1 396 0 3015 214 74 22 chr1 83873804 83873899 -158790454 - L1MC4 LINE L1 -40 8002 7913 216 0 0 0 chr1 83873899 83873923 -158790430 + (CA)n Simple_repeat Simple_repeat 1 24 0 3015 214 74 22 chr1 83873923 83874267 -158790086 - L1MC4 LINE L1 -129 7913 7588 4128 64 24 4 chr1 83874267 83874812 -158789541 - L1PA7 LINE L1 -3 6151 5596 3015 214 74 22 chr1 83874812 83875196 -158789157 - L1MC4 LINE L1 -454 7588 7128 1579 194 19 13 chr1 83875208 83875517 -158788836 - AluJo SINE Alu -1 311 1 2811 16 0 12 chr1 83875587 83875906 -158788447 - AluYb8 SINE Alu -3 315 1 7694 123 27 30 chr1 83876183 83877466 -158786887 + HSMAR2 DNA Mariner 3 1281 -21 226 67 0 0 chr1 83877505 83877535 -158786818 + HSMAR2 DNA Mariner 1272 1301 -1 414 274 59 30 chr1 83878114 83878249 -158786104 - MIR3 SINE MIR -4 204 66 738 315 143 56 chr1 83878905 83879470 -158784883 - L2 LINE L2 0 3272 2591 2426 165 50 20 chr1 83879470 83879966 -158784387 + L1MB5 LINE L1 5656 6166 -8 738 315 143 56 chr1 83879966 83880261 -158784092 - L2 LINE L2 -681 2591 2323 557 292 6 22 chr1 83880299 83880477 -158783876 + MIR SINE MIR 88 262 0 196 271 171 0 chr1 83881171 83881241 -158783112 + MIR SINE MIR 175 256 -6 226 286 16 0 chr1 83881526 83881589 -158782764 + MIR SINE MIR 73 136 -126 217 205 169 60 chr1 83881648 83881731 -158782622 + L2 LINE L2 3181 3272 0 343 270 52 26 chr1 83882597 83882712 -158781641 - L2 LINE L2 0 3313 3196 300 27 0 0 chr1 83883274 83883311 -158781042 + (GGA)n Simple_repeat Simple_repeat 1 37 0 1852 157 38 14 chr1 83883590 83883883 -158780470 + AluSx SINE Alu 1 300 -12 267 346 89 42 chr1 83883909 83884146 -158780207 - L2 LINE L2 -338 2976 2729 630 241 44 22 chr1 83884233 83884507 -158779846 + L1MEc LINE L1 2015 2294 -4102 1149 245 6 37 chr1 83884513 83884835 -158779518 + L1ME2 LINE L1 5843 6154 -10 184 333 58 14 chr1 83884965 83885034 -158779319 - L2 LINE L2 -26 3246 3175 845 260 20 69 chr1 83885211 83885557 -158778796 + L1ME1 LINE L1 5745 6073 -93 376 186 62 10 chr1 83885633 83885730 -158778623 + L1MA10 LINE L1 6231 6332 -2 517 276 0 8 chr1 83885877 83886011 -158778342 - MIR SINE MIR -17 245 113 254 295 48 56 chr1 83886011 83886262 -158778091 - MLT1J LTR MaLR -6 505 257 357 102 0 0 chr1 83886282 83886331 -158778022 + L1PB4 LINE L1 6057 6105 -51 331 269 14 33 chr1 83886343 83886480 -158777873 - MLT1J LTR MaLR -203 206 72 191 333 64 13 chr1 83886527 83886605 -158777748 - MIR SINE MIR -177 85 4 225 313 16 0 chr1 83887367 83887431 -158776922 - L2 LINE L2 -10 3303 3239 24 32 0 0 chr1 83888244 83888275 -158776078 + AT_rich Low_complexity Low_complexity 1 31 0 205 229 0 29 chr1 83888519 83888589 -158775764 + (TA)n Simple_repeat Simple_repeat 1 68 0 1358 163 21 18 chr1 83889036 83889994 -158774359 + L1MB8 LINE L1 5096 6157 -21 433 235 80 64 chr1 83890743 83890930 -158773423 + L2 LINE L2 3102 3291 -22 1039 117 0 6 chr1 83891348 83891511 -158772842 + L1PA14 LINE L1 5997 6158 -3 1484 192 39 11 chr1 83891811 83892092 -158772261 + AluJb SINE Alu 1 289 -23 31 44 0 0 chr1 83892910 83892955 -158771398 + AT_rich Low_complexity Low_complexity 1 45 0 2225 80 0 11 chr1 83893972 83894317 -158770036 - AluY SINE Alu 0 342 1 560 86 0 12 chr1 83894319 83894400 -158769953 - L1PA10 LINE L1 -4 6164 6085 453 264 132 6 chr1 83895033 83895200 -158769153 + MIR SINE MIR 22 209 -53 461 322 94 0 chr1 83896224 83896395 -158767958 - MIR SINE MIR -70 192 6 261 279 82 8 chr1 83898460 83898582 -158765771 + L2 LINE L2 2930 3060 -212 2009 140 0 3 chr1 83898634 83898926 -158765427 - AluJb SINE Alu -10 302 12 1274 292 36 5 chr1 83899194 83899605 -158764748 - LTR16C LTR ERVL 0 491 68 356 221 23 12 chr1 83900015 83900101 -158764252 + MER58 DNA MER1_type 129 2420 0 935 260 209 37 chr1 83900336 83900815 -158763538 + HAL1 LINE L1 764 1160 -1347 1992 144 10 67 chr1 83900815 83901203 -158763150 + MER47A DNA MER2_type 1 366 0 935 260 209 37 chr1 83901203 83901716 -158762637 + HAL1 LINE L1 1160 1926 -581 2181 127 0 16 chr1 83902236 83902550 -158761803 + AluSx SINE Alu 1 309 -3 978 109 0 0 chr1 83902618 83902755 -158761598 + AluSg/x SINE Alu 162 298 -14 341 285 89 57 chr1 83902756 83902914 -158761439 + HAL1 LINE L1 2339 2501 -6 23 0 0 0 chr1 83905561 83905584 -158758769 + AT_rich Low_complexity Low_complexity 1 23 0 326 296 11 0 chr1 83905584 83905672 -158758681 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 2278 71 3 19 chr1 83905706 83906014 -158758339 - AluY SINE Alu -8 303 1 487 317 73 0 chr1 83906154 83906318 -158758035 + MIR SINE MIR 10 185 -77 1725 231 163 27 chr1 83906319 83907168 -158757185 + L2 LINE L2 2304 3251 -62 316 284 69 10 chr1 83907179 83907281 -158757072 + MIR SINE MIR 155 262 0 2015 176 92 12 chr1 83907810 83908310 -158756043 + L1MA9 LINE L1 5751 6290 -22 913 177 14 0 chr1 83908689 83908866 -158755487 + FRAM SINE Alu 1 176 0 21 0 0 0 chr1 83909554 83909575 -158754778 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr1 83909604 83909647 -158754706 + AT_rich Low_complexity Low_complexity 1 43 0 2118 130 7 0 chr1 83909953 83910260 -158754093 + AluSx SINE Alu 1 309 -3 1761 197 43 5 chr1 83911049 83911419 -158752934 + MSTB1 LTR MaLR 49 432 0 1658 142 44 69 chr1 83913973 83914290 -158750063 - AluSx SINE Alu -1 311 3 442 304 7 68 chr1 83914403 83914551 -158749802 + MIR SINE MIR 12 141 -67 263 263 37 11 chr1 83914902 83914994 -158749359 - MER5A DNA MER1_type -80 109 2 225 226 19 0 chr1 83914997 83915050 -158749303 + MIR SINE MIR 159 212 -50 725 201 98 17 chr1 83915178 83915352 -158749001 - MER5A DNA MER1_type 0 189 2 1266 205 19 42 chr1 83915377 83915754 -158748599 + MLT2B1 LTR ERVL 1 366 -48 243 173 0 0 chr1 83915754 83915806 -158748547 + (TG)n Simple_repeat Simple_repeat 2 53 0 34 24 0 0 chr1 83915841 83915882 -158748471 + AT_rich Low_complexity Low_complexity 1 41 0 292 333 71 8 chr1 83916130 83916256 -158748097 + L2 LINE L2 3179 3312 -1 954 183 36 46 chr1 83916382 83916601 -158747752 + MER20 DNA MER1_type 1 217 -2 465 179 15 22 chr1 83917587 83917721 -158746632 + GA-rich Low_complexity Low_complexity 2 134 0 482 263 80 12 chr1 83917731 83917916 -158746437 - MIR SINE MIR -19 243 37 21 36 0 0 chr1 83917995 83918023 -158746330 + AT_rich Low_complexity Low_complexity 1 28 0 294 275 181 31 chr1 83918164 83918324 -158746029 - L2 LINE L2 0 3313 3130 222 37 0 0 chr1 83918486 83918513 -158745840 + (TC)n Simple_repeat Simple_repeat 1 27 0 495 306 49 33 chr1 83918607 83918790 -158745563 + MIR3 SINE MIR 17 202 -6 7673 195 104 13 chr1 83918877 83920627 -158743726 + L1MA1 LINE L1 10 1918 -5647 819 95 108 0 chr1 83920641 83920799 -158743554 + L1MA1 LINE L1 3441 3615 -3950 769 155 12 0 chr1 83920792 83920953 -158743400 - L1 LINE L1 -2335 3811 3649 * 8155 139 33 14 chr1 83920954 83923540 -158740813 + L1MA1 LINE L1 5090 7721 0 237 200 0 0 chr1 83925109 83925154 -158739199 - L2 LINE L2 -5 3308 3264 255 61 0 0 chr1 83925591 83925624 -158738729 + (CA)n Simple_repeat Simple_repeat 2 34 0 4094 146 6 13 chr1 83925639 83926356 -158737997 + L1PA13 LINE L1 3439 4150 -1996 6382 80 20 0 chr1 83926356 83926371 -158737982 + L1PA13 LINE L1 4399 4412 -1751 1531 142 0 29 chr1 83926371 83926617 -158737736 + AluJb SINE Alu 73 311 -1 6382 80 20 0 chr1 83926617 83928335 -158736018 + L1PA13 LINE L1 4412 6158 -5 29 28 0 0 chr1 83928449 83928485 -158735868 + AT_rich Low_complexity Low_complexity 1 36 0 236 435 32 0 chr1 83928494 83928618 -158735735 - L2 LINE L2 -1 3271 3144 470 323 84 88 chr1 83929184 83929661 -158734692 - L2 LINE L2 -429 2885 2411 232 333 0 39 chr1 83929817 83929895 -158734458 + MIR SINE MIR 48 122 -140 180 0 0 0 chr1 83929901 83929921 -158734432 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1705 171 37 43 chr1 83929986 83930336 -158734017 + MER7A DNA MER2_type 1 346 0 2466 66 0 24 chr1 83930601 83930934 -158733419 + L1PA7 LINE L1 5823 6147 -7 27 49 0 0 chr1 83932325 83932366 -158731987 + AT_rich Low_complexity Low_complexity 1 41 0 5121 167 28 31 chr1 83932377 83934486 -158729867 - L1PA16 LINE L1 -7 6159 4053 24 0 0 0 chr1 83934764 83934788 -158729565 + AT_rich Low_complexity Low_complexity 1 24 0 749 207 83 0 chr1 83935293 83935462 -158728891 - MER20 DNA MER1_type -4 215 33 3162 241 47 34 chr1 83935874 83936808 -158727545 + L2 LINE L2 1671 2616 -698 462 167 0 83 chr1 83936838 83936946 -158727407 - L1MA9 LINE L1 -22 6290 6191 2728 91 11 3 chr1 83936946 83937307 -158727046 + THE1B LTR MaLR 1 364 0 462 167 0 83 chr1 83937307 83937318 -158727035 - L1MA9 LINE L1 -121 6191 6181 1312 145 25 4 chr1 83937321 83937556 -158726797 - L1MA9 LINE L1 -231 6081 5842 257 25 75 0 chr1 83937571 83937611 -158726742 + A-rich Low_complexity Low_complexity 2 44 0 239 204 0 0 chr1 83937611 83937665 -158726688 + L1MA4 LINE L1 5307 5360 -974 * 448 120 70 30 chr1 83937664 83937724 -158726629 + L1MA4 LINE L1 5725 5792 -508 236 30 30 0 chr1 83937724 83937757 -158726596 + (TG)n Simple_repeat Simple_repeat 2 35 0 448 120 70 30 chr1 83937757 83937796 -158726557 + L1MA4 LINE L1 5792 5828 -472 1133 283 85 47 chr1 83937803 83938485 -158725868 + L2 LINE L2 2609 3309 -4 796 118 35 0 chr1 83938704 83938848 -158725505 - L1MA8 LINE L1 0 6291 6143 1225 211 31 21 chr1 83939211 83939500 -158724853 - MLT1F LTR MaLR 0 542 251 351 0 0 0 chr1 83939532 83939571 -158724782 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 175 0 0 chr1 83939625 83939665 -158724688 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 452 222 113 94 chr1 83939859 83940071 -158724282 - MLT1F LTR MaLR -293 249 34 453 261 0 0 chr1 83942042 83942134 -158722219 + L2 LINE L2 3222 3313 0 516 32 0 0 chr1 83944812 83944874 -158719479 + (CA)n Simple_repeat Simple_repeat 2 63 0 21 26 0 26 chr1 83945413 83945431 -158718922 + GC_rich Low_complexity Low_complexity 1 18 -20 186 43 0 0 chr1 83945431 83945454 -158718899 + (CTCGG)n Simple_repeat Simple_repeat 4 26 0 21 26 0 26 chr1 83945454 83945474 -158718879 + GC_rich Low_complexity Low_complexity 18 38 0 236 200 17 0 chr1 83945509 83945569 -158718784 + (CTG)n Simple_repeat Simple_repeat 1 61 0 213 204 0 0 chr1 83945612 83945656 -158718697 + C-rich Low_complexity Low_complexity 2 45 0 388 314 53 20 chr1 83946738 83946910 -158717443 + MIR SINE MIR 2 190 -18 225 276 52 60 chr1 83947313 83947429 -158716924 - MIR SINE MIR -56 206 92 296 218 57 89 chr1 83947653 83947777 -158716576 - MIR SINE MIR -40 222 103 1720 154 0 0 chr1 83947918 83948184 -158716169 - MER7A DNA MER2_type 0 336 71 2208 110 3 0 chr1 83948184 83948475 -158715878 + AluSq SINE Alu 1 292 -21 605 226 6 0 chr1 83948475 83948652 -158715701 + GA-rich Low_complexity Low_complexity 1 178 0 545 230 0 0 chr1 83948669 83948769 -158715584 - MER7A DNA MER2_type -248 98 1 364 224 171 67 chr1 83948793 83949003 -158715350 - Charlie8 DNA MER1_type -2155 262 31 6959 64 0 6 chr1 83949230 83950453 -158713900 - L1PA7 LINE L1 -2 6152 4930 792 295 80 35 chr1 83952428 83952801 -158711552 - L2 LINE L2 -3 3310 2921 311 199 96 58 chr1 83952831 83952987 -158711366 - Charlie7 DNA MER1_type -8 2604 2443 206 343 15 0 chr1 83953088 83953155 -158711198 - L2 LINE L2 -577 2737 2670 1742 245 67 11 chr1 83953294 83953845 -158710508 + L1MC4 LINE L1 6725 7306 -736 187 354 15 15 chr1 83954945 83955010 -158709343 + MIR SINE MIR 38 102 -106 226 263 132 9 chr1 83955170 83955284 -158709069 + MLT1J LTR MaLR 384 511 0 270 373 86 34 chr1 83955288 83955765 -158708588 - L2 LINE L2 -1831 1483 982 224 372 58 13 chr1 83955772 83955928 -158708425 + L2 LINE L2 2722 2884 -430 317 348 111 55 chr1 83956135 83956694 -158707659 + L2 LINE L2 2627 3225 -47 1505 168 21 41 chr1 83956801 83957092 -158707261 + AluJo SINE Alu 9 293 -19 529 325 0 30 chr1 83957296 83957465 -158706888 - MIR3 SINE MIR -24 184 21 260 272 95 82 chr1 83957782 83957929 -158706424 + MIR SINE MIR 1 149 -113 213 39 0 0 chr1 83959990 83960016 -158704337 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1579 183 21 11 chr1 83960778 83960935 -158703418 - AluJb SINE Alu -22 290 127 2228 101 34 0 chr1 83960935 83961232 -158703121 - AluSx SINE Alu -5 307 1 1579 183 21 11 chr1 83961232 83961359 -158702994 - AluJb SINE Alu -185 127 3 203 265 20 0 chr1 83961834 83961883 -158702470 - MIR3 SINE MIR -10 198 149 548 323 60 23 chr1 83962116 83962333 -158702020 + MIR SINE MIR 22 246 -16 366 321 0 0 chr1 83962441 83962525 -158701828 + L2 LINE L2 3184 3267 -5 10167 30 0 0 chr1 83962560 83963773 -158700580 - L1PA3 LINE L1 -1438 4708 3496 7636 26 3 1 chr1 83963773 83965216 -158699137 + L1PA3 LINE L1 4706 6155 0 208 242 0 106 chr1 83965237 83965303 -158699050 + MIR SINE MIR 48 106 -156 1161 234 3 14 chr1 83965311 83965599 -158698754 - L1PB4 LINE L1 -1 6155 5871 370 307 14 14 chr1 83965610 83965750 -158698603 + MIR SINE MIR 123 262 0 375 320 142 9 chr1 83965783 83966002 -158698351 + MIR SINE MIR 3 250 -12 738 201 0 62 chr1 83966394 83966528 -158697825 + Charlie5 DNA MER1_type 1 123 -2501 2725 176 31 5 chr1 83966528 83967080 -158697273 + L1MB4 LINE L1 5615 6180 0 738 201 0 62 chr1 83967080 83967124 -158697229 + Charlie5 DNA MER1_type 123 168 -2456 238 224 0 0 chr1 83967492 83967541 -158696812 - MIR SINE MIR -62 200 152 763 166 19 21 chr1 83968089 83968280 -158696073 - L1MA6 LINE L1 -295 5866 5679 2267 162 33 18 chr1 83968280 83968736 -158695617 + L1MA8 LINE L1 5828 6291 0 430 263 180 64 chr1 83969462 83969839 -158694514 - MLT1H LTR MaLR -6 543 123 21 0 0 0 chr1 83970301 83970322 -158694031 + AT_rich Low_complexity Low_complexity 1 21 0 437 250 92 7 chr1 83970589 83970741 -158693612 + Charlie4 DNA MER1_type 1796 1960 -1 180 125 0 0 chr1 83972081 83972113 -158692240 + (GGA)n Simple_repeat Simple_repeat 3 34 0 2521 133 0 3 chr1 83972918 83973278 -158691075 + THE1B LTR MaLR 6 364 0 604 164 24 145 chr1 83973908 83974038 -158690315 - MER39 LTR ERV1 0 707 610 8219 42 1 5 chr1 83974038 83975817 -158688536 - L1PA5 LINE L1 -3 6151 4364 604 164 24 145 chr1 83975817 83975893 -158688460 - MER39 LTR ERV1 -97 610 526 8613 120 37 9 chr1 83975899 83977402 -158686951 + THE1C-int LTR MaLR 1 1570 -10 2087 166 21 16 chr1 83977412 83977785 -158686568 + THE1C LTR MaLR 1 375 0 519 243 100 88 chr1 83977785 83978025 -158686328 - MER39 LTR ERV1 -203 504 259 225 271 12 24 chr1 83978010 83978095 -158686258 - LTR48B LTR ERV1 -555 89 6 * 677 227 102 42 chr1 83978108 83978372 -158685981 + Charlie4 DNA MER1_type 1 280 -1681 917 117 19 7 chr1 83979464 83979618 -158684735 - L1PB4 LINE L1 -5 6151 5996 422 212 61 8 chr1 83979838 83979970 -158684383 + Charlie4 DNA MER1_type 1823 1961 0 1190 201 127 0 chr1 83980060 83980289 -158684064 - AluJo SINE Alu -54 258 1 2270 62 0 4 chr1 83980843 83981115 -158683238 + AluY SINE Alu 34 304 -7 4006 139 63 13 chr1 83981186 83981863 -158682490 + MER50 LTR ERV1 1 711 -23 1722 188 3 10 chr1 83981905 83982214 -158682139 + AluJo SINE Alu 1 307 -5 1926 123 46 0 chr1 83982606 83982891 -158681462 + AluSx SINE Alu 1 298 -14 791 89 24 0 chr1 83984583 83984707 -158679646 + L1PA15 LINE L1 6036 6162 -3 1192 312 60 12 chr1 83984720 83985204 -158679149 + L1MA4 LINE L1 350 856 -6709 * 8025 187 31 75 chr1 83985202 83986264 -158678089 + L1MA4 LINE L1 2529 3636 -4083 2025 155 0 0 chr1 83986264 83986561 -158677792 + AluSx SINE Alu 3 299 -13 8025 187 31 75 chr1 83986561 83986662 -158677691 + L1MA4 LINE L1 3636 3740 -3979 1717 192 3 0 chr1 83986662 83986959 -158677394 + AluJb SINE Alu 1 298 -14 8025 187 31 75 chr1 83986959 83987475 -158676878 + L1MA4 LINE L1 3740 4277 -3442 1446 186 63 7 chr1 83987475 83987771 -158676582 - AluJb SINE Alu 0 311 1 8025 187 31 75 chr1 83987771 83988897 -158675456 + L1MA4 LINE L1 4277 5451 -2268 252 0 0 0 chr1 83988897 83988925 -158675428 + (CAGG)n Simple_repeat Simple_repeat 1 28 0 8025 187 31 75 chr1 83988925 83988939 -158675414 + L1MA4 LINE L1 5451 5464 -2255 1142 140 174 43 chr1 83988939 83989174 -158675179 + AluJo SINE Alu 34 299 -13 8025 187 31 75 chr1 83989174 83989344 -158675009 + L1MA4 LINE L1 5464 5640 -2079 1617 174 3 14 chr1 83989344 83989632 -158674721 + AluSx SINE Alu 27 311 -1 8025 187 31 75 chr1 83989632 83992036 -158672317 + L1MA4 LINE L1 5640 7698 -21 1393 233 64 3 chr1 83992544 83992888 -158671465 + MLT1A1 LTR MaLR 1 365 0 7944 202 26 21 chr1 83992905 83993957 -158670396 + L1P4 LINE L1 3335 4380 -1786 189 0 0 0 chr1 83993957 83993978 -158670375 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 7944 202 26 21 chr1 83993978 83994049 -158670304 + L1P4 LINE L1 4380 4449 -1717 2326 81 0 3 chr1 83994049 83994344 -158670009 + AluY SINE Alu 17 310 -1 7944 202 26 21 chr1 83994344 83995657 -158668696 + L1P4 LINE L1 4449 5785 -381 9389 88 10 10 chr1 83995657 83996999 -158667354 + L1P LINE L1 3324 4666 -1480 189 0 0 0 chr1 83996999 83997020 -158667333 + (CAAAAA)n Simple_repeat Simple_repeat 1 21 0 191 182 114 0 chr1 83997026 83997070 -158667283 - MIR SINE MIR -107 155 107 24 0 0 0 chr1 83997541 83997565 -158666788 + AT_rich Low_complexity Low_complexity 1 24 0 1848 134 42 36 chr1 83997710 83998016 -158666337 - AluJb SINE Alu -4 308 1 1924 125 0 38 chr1 83998107 83998395 -158665958 + AluSx SINE Alu 1 277 -35 224 98 0 24 chr1 83998400 83998441 -158665912 + (GAA)n Simple_repeat Simple_repeat 2 41 0 189 147 0 0 chr1 83999079 83999113 -158665240 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr1 83999713 83999734 -158664619 + AT_rich Low_complexity Low_complexity 1 21 0 1864 240 53 20 chr1 84000264 84000813 -158663540 - MER74B LTR ERVL 0 622 56 200 354 0 31 chr1 84000928 84000993 -158663360 + L2 LINE L2 3154 3216 -56 13732 151 34 28 chr1 84001367 84003779 -158660574 + L1M1 LINE L1 16 2445 -5120 2154 121 0 7 chr1 84003779 84004076 -158660277 - AluSq SINE Alu -18 295 1 13732 151 34 28 chr1 84004076 84004205 -158660148 + L1M1 LINE L1 2445 2572 -4993 3888 153 6 7 chr1 84004199 84004906 -158659447 - L1PA10 LINE L1 -1187 4959 4254 * 5905 104 25 7 chr1 84004907 84006095 -158658258 + L1PA10 LINE L1 4948 6153 -15 5665 97 72 18 chr1 84006095 84007142 -158657211 + L1M1 LINE L1 2564 3666 -3899 40355 37 23 1 chr1 84007145 84013180 -158651173 + L1PA3 LINE L1 3 6171 0 526 226 0 0 chr1 84013212 84013336 -158651017 + L1M1 LINE L1 3653 3776 -3789 2059 161 31 6 chr1 84013336 84013691 -158650662 - THE1B LTR MaLR 0 364 1 8181 146 56 24 chr1 84013691 84015221 -158649132 - THE1C-int LTR MaLR 0 1580 1 2561 117 5 8 chr1 84015221 84015597 -158648756 - THE1C LTR MaLR 0 375 1 1141 257 112 75 chr1 84015653 84016355 -158647998 - L2 LINE L2 -164 3149 2434 2586 155 43 52 chr1 84016460 84016707 -158647646 + MER41E LTR ERV1 1 249 -263 2194 107 0 0 chr1 84016707 84016996 -158647357 - AluSx SINE Alu -23 289 1 2586 155 43 52 chr1 84016996 84017265 -158647088 + MER41E LTR ERV1 249 512 0 486 296 32 32 chr1 84017414 84017600 -158646753 + MER41E-int LTR ERV1 145 330 -6875 940 296 44 48 chr1 84018125 84018937 -158645416 + MER41E-int LTR ERV1 3219 4020 -3736 1367 244 58 41 chr1 84018976 84019485 -158644868 + MER41E-int LTR ERV1 6135 6655 -21 1703 128 86 42 chr1 84019485 84019844 -158644509 - THE1C LTR MaLR 0 375 1 1367 244 58 41 chr1 84019844 84019867 -158644486 + MER41E-int LTR ERV1 6655 6676 0 1904 113 11 0 chr1 84019952 84020236 -158644117 + MER41E LTR ERV1 3 289 -223 763 169 0 0 chr1 84020236 84020354 -158643999 + AluSq/x SINE Alu 1 118 -195 1221 166 22 14 chr1 84020390 84020613 -158643740 + MER41E LTR ERV1 277 501 -11 744 298 37 0 chr1 84020613 84020831 -158643522 - L2 LINE L2 -938 2376 2151 609 241 43 47 chr1 84020849 84021081 -158643272 - LTR16A1 LTR ERVL -14 443 213 * 1260 212 31 31 chr1 84021079 84021371 -158642982 - MLT1A2 LTR MaLR -82 292 1 364 156 0 0 chr1 84021371 84021432 -158642921 - MER45 DNA AcHobo -1416 165 105 1948 260 85 55 chr1 84021470 84021573 -158642780 - L2 LINE L2 -1647 1667 1569 2292 108 0 13 chr1 84021573 84021887 -158642466 - AluSg SINE Alu 0 310 1 1948 260 85 55 chr1 84021887 84022545 -158641808 - L2 LINE L2 -1745 1569 883 2649 248 69 17 chr1 84023033 84023744 -158640609 - L2 LINE L2 -1160 2154 1407 230 273 127 53 chr1 84023832 84023982 -158640371 + L2 LINE L2 3118 3278 -35 223 144 33 22 chr1 84025074 84025164 -158639189 + (TA)n Simple_repeat Simple_repeat 1 91 0 36 53 0 0 chr1 84025197 84025254 -158639099 + AT_rich Low_complexity Low_complexity 1 57 0 1210 229 121 27 chr1 84025423 84025795 -158638558 - MLT1I LTR MaLR 0 409 3 2018 87 48 28 chr1 84026006 84026295 -158638058 + AluY SINE Alu 1 295 -16 401 192 233 4 chr1 84026368 84026508 -158637845 + L1ME1 LINE L1 6006 6332 -2 676 228 8 0 chr1 84026519 84026642 -158637711 + FLAM_C SINE Alu 1 124 -19 249 374 172 15 chr1 84026669 84026867 -158637486 - MIR SINE MIR -10 252 24 931 133 15 0 chr1 84026897 84027032 -158637321 + AluJb SINE Alu 1 137 -175 39740 48 21 2 chr1 84027032 84033065 -158631288 + L1PA4 LINE L1 2 6153 -2 764 168 0 0 chr1 84033296 84033415 -158630938 + FLAM_C SINE Alu 1 119 -24 26 0 0 0 chr1 84033419 84033445 -158630908 + AT_rich Low_complexity Low_complexity 1 26 0 631 214 30 0 chr1 84033732 84033863 -158630490 + AluJo SINE Alu 1 135 -177 674 314 126 40 chr1 84033908 84034465 -158629888 - L1M4 LINE L1 -1679 4467 3863 284 278 0 0 chr1 84034512 84034584 -158629769 - L1M4 LINE L1 -2287 3859 3788 966 303 201 37 chr1 84034647 84035067 -158629286 - L1M4 LINE L1 -2456 3690 3340 1842 136 14 11 chr1 84035067 84035367 -158628986 - AluSx SINE Alu 0 301 1 966 303 201 37 chr1 84035367 84036011 -158628342 - L1M4 LINE L1 -2806 3340 2450 3392 88 13 0 chr1 84036567 84037019 -158627334 - LTR22A LTR ERVK 0 458 1 280 290 102 51 chr1 84037451 84037521 -158626832 + L1ME4a LINE L1 5534 5599 -522 2215 90 13 13 chr1 84037521 84037833 -158626520 + AluSx SINE Alu 1 312 0 280 290 102 51 chr1 84037833 84038134 -158626219 + L1ME4a LINE L1 5599 5924 -197 548 286 126 24 chr1 84038918 84039212 -158625141 - L1M4 LINE L1 -2682 3464 3141 1555 184 103 31 chr1 84039212 84039657 -158624696 + L1ME1 LINE L1 5681 6157 -9 389 182 0 117 chr1 84039521 84039667 -158624686 + L1MA9 LINE L1 6177 6306 -6 * 2008 155 0 25 chr1 84039667 84039983 -158624370 + AluJb SINE Alu 1 308 -4 1220 168 141 10 chr1 84040807 84041243 -158623110 - LTR64 LTR ERVK 0 558 1 204 135 0 0 chr1 84042093 84042130 -158622223 + (A)n Simple_repeat Simple_repeat 1 37 0 999 287 109 0 chr1 84042234 84042582 -158621771 + L2 LINE L2 622 1007 -2307 678 257 64 6 chr1 84042622 84042793 -158621560 + L2 LINE L2 1323 1503 -1811 1080 214 109 0 chr1 84042971 84043228 -158621125 + LTR47A LTR ERVL 2 286 -166 1454 199 19 22 chr1 84043230 84043501 -158620852 - AluJb SINE Alu -42 270 1 7236 169 24 22 chr1 84043501 84044079 -158620274 + L1PA15 LINE L1 3712 4287 -1878 2372 86 10 0 chr1 84044079 84044370 -158619983 - AluSx SINE Alu -17 295 2 7236 169 24 22 chr1 84044370 84045594 -158618759 + L1PA15 LINE L1 4287 5507 -658 1711 178 30 0 chr1 84045594 84045892 -158618461 + AluJo SINE Alu 1 307 -5 7236 169 24 22 chr1 84045892 84046146 -158618207 + L1PA15 LINE L1 5507 5778 -387 2224 112 3 10 chr1 84046146 84046458 -158617895 + AluSx SINE Alu 1 310 -2 7236 169 24 22 chr1 84046458 84046582 -158617771 + L1PA15 LINE L1 5778 5900 -265 1087 155 0 0 chr1 84046583 84046751 -158617602 + AluSg/x SINE Alu 129 296 -16 1634 107 36 8 chr1 84046755 84047008 -158617345 + L1PA15 LINE L1 5888 6147 -18 4677 195 85 32 chr1 84047016 84048209 -158616144 + LTR49-int LTR ERV1 1182 2437 -1754 3227 147 85 82 chr1 84048207 84049226 -158615127 + LTR49-int LTR ERV1 4835 6146 -452 * 2368 153 81 2 chr1 84049335 84049754 -158614599 + LTR47A LTR ERVL 1 452 0 256 262 78 0 chr1 84049922 84050025 -158614328 + L1MC4a LINE L1 7197 7307 -501 2372 112 15 119 chr1 84050027 84050674 -158613679 - MER4E LTR ERV1 -9 757 1 1419 129 0 73 chr1 84050675 84050923 -158613430 - MER30 DNA MER1_type 0 230 1 301 299 19 9 chr1 84050931 84051038 -158613315 + L1MC4 LINE L1 7380 7487 -555 * 358 254 70 84 chr1 84051030 84051492 -158612861 + L1MC4 LINE L1 7311 7878 -164 213 229 0 0 chr1 84051517 84051565 -158612788 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 304 143 0 0 chr1 84051597 84051645 -158612708 + LTR9 LTR ERV1 12 59 -553 798 62 0 18 chr1 84051645 84051757 -158612596 + LTR10C LTR ERV1 1 110 -481 3203 135 8 2 chr1 84051757 84052254 -158612099 + LTR3b LTR ERVK 1 500 0 2796 103 27 8 chr1 84052254 84052724 -158611629 + LTR10C LTR ERV1 105 505 0 1295 103 20 0 chr1 84052724 84052919 -158611434 + LTR9 LTR ERV1 56 254 -358 235 236 14 28 chr1 84054012 84054084 -158610269 + (CCCCG)n Simple_repeat Simple_repeat 3 73 0 221 312 80 32 chr1 84055223 84055348 -158609005 - MIR SINE MIR -112 150 20 1351 151 163 4 chr1 84055525 84055783 -158608570 + AluSx SINE Alu 1 299 -3 456 306 66 5 chr1 84055942 84056138 -158608215 + MIR SINE MIR 2 209 -53 2418 90 0 0 chr1 84056203 84056504 -158607849 - AluSg SINE Alu -8 302 2 441 198 90 0 chr1 84057081 84057192 -158607161 - MER58B DNA MER1_type -1 340 220 799 152 7 58 chr1 84058663 84058834 -158605519 - FLAM_C SINE Alu 0 166 3 1882 142 38 3 chr1 84058904 84059192 -158605161 - AluSx SINE Alu -14 298 1 1934 148 10 0 chr1 84059284 84059575 -158604778 - AluSx SINE Alu -18 294 1 363 292 46 15 chr1 84059768 84059898 -158604455 + MIR SINE MIR 116 249 -13 1210 215 87 42 chr1 84059920 84060208 -158604145 - AluJo SINE Alu -9 303 3 2340 50 40 17 chr1 84060388 84060688 -158603665 + AluY SINE Alu 1 307 -4 772 177 8 0 chr1 84061127 84061257 -158603096 + FLAM_C SINE Alu 3 133 0 1710 182 7 0 chr1 84061280 84061549 -158602804 + AluJb SINE Alu 29 299 -13 1119 93 0 0 chr1 84063393 84063533 -158600820 - AluSg/x SINE Alu -39 271 132 2498 56 0 37 chr1 84063533 84063855 -158600498 - AluY SINE Alu -1 310 1 2011 136 13 13 chr1 84064418 84064720 -158599633 + AluSx SINE Alu 1 302 -10 2061 109 39 0 chr1 84064951 84065236 -158599117 + AluSx SINE Alu 1 296 -16 762 172 0 0 chr1 84065248 84065364 -158598989 + FLAM_C SINE Alu 1 116 -27 267 31 0 0 chr1 84065364 84065396 -158598957 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 360 43 0 0 chr1 84065540 84065586 -158598767 + (CA)n Simple_repeat Simple_repeat 2 47 0 29 47 0 0 chr1 84066096 84066139 -158598214 + AT_rich Low_complexity Low_complexity 1 43 0 351 303 98 34 chr1 84066246 84066480 -158597873 - L1ME4a LINE L1 -175 5946 5698 725 148 0 0 chr1 84066533 84066641 -158597712 + FLAM_C SINE Alu 1 108 -35 432 0 0 0 chr1 84066662 84066710 -158597643 + (TA)n Simple_repeat Simple_repeat 2 49 0 338 301 41 16 chr1 84067013 84067136 -158597217 - L3 LINE CR1 -72 1505 1380 21 0 0 0 chr1 84067176 84067197 -158597156 + AT_rich Low_complexity Low_complexity 1 21 0 2078 123 0 0 chr1 84067293 84067598 -158596755 - AluY SINE Alu 0 305 1 2218 80 10 27 chr1 84067612 84067911 -158596442 - AluSx SINE Alu -18 294 1 21 0 0 0 chr1 84067990 84068011 -158596342 + AT_rich Low_complexity Low_complexity 1 21 0 682 171 0 8 chr1 84068011 84068128 -158596225 - FLAM_C SINE Alu -17 116 1 271 356 116 54 chr1 84068268 84068789 -158595564 + L2 LINE L2 2717 3272 0 1525 174 44 24 chr1 84068904 84069197 -158595156 + AluJo SINE Alu 1 299 -13 28 29 0 0 chr1 84069236 84069271 -158595082 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr1 84069993 84070031 -158594322 + AT_rich Low_complexity Low_complexity 1 38 0 543 321 255 12 chr1 84070078 84070501 -158593852 + L3 LINE CR1 930 1455 -122 856 156 0 15 chr1 84070860 84070995 -158593358 + FLAM_C SINE Alu 1 133 -10 21 0 0 0 chr1 84071385 84071406 -158592947 + AT_rich Low_complexity Low_complexity 1 21 0 1407 129 117 57 chr1 84074374 84074585 -158589768 - MER44D DNA MER2_type -1885 606 409 1651 192 14 10 chr1 84074585 84074876 -158589477 + AluJb SINE Alu 1 292 -20 1407 129 117 57 chr1 84074876 84074981 -158589372 - MER44D DNA MER2_type -2082 409 1 419 250 124 1 chr1 84074989 84075123 -158589230 + MIR SINE MIR 45 192 -61 23 0 0 0 chr1 84075324 84075347 -158589006 + AT_rich Low_complexity Low_complexity 1 23 0 292 243 108 27 chr1 84075623 84075734 -158588619 - MIR SINE MIR -70 192 73 31 44 0 0 chr1 84075905 84075950 -158588403 + AT_rich Low_complexity Low_complexity 1 45 0 2108 140 0 0 chr1 84075979 84076279 -158588074 - AluJo SINE Alu -12 300 1 400 260 39 39 chr1 84076676 84076803 -158587550 - L2 LINE L2 -9 3304 3178 1535 211 0 18 chr1 84076884 84077164 -158587189 + AluJb SINE Alu 1 275 -37 379 236 31 84 chr1 84077507 84077698 -158586655 + L1MC4 LINE L1 7862 8042 0 1983 216 75 6 chr1 84077715 84078265 -158586088 + L1ME1 LINE L1 5574 6161 -5 929 206 106 0 chr1 84078503 84078702 -158585651 - MER58A DNA MER1_type -4 220 1 2371 108 0 0 chr1 84079084 84079390 -158584963 - AluSc SINE Alu -3 306 1 1232 149 0 0 chr1 84080131 84080305 -158584048 - AluSg/x SINE Alu -15 297 124 593 263 24 24 chr1 84080412 84080625 -158583728 + L1MC4 LINE L1 7690 7902 -140 243 0 0 0 chr1 84081166 84081193 -158583160 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 2092 132 7 0 chr1 84081444 84081759 -158582594 + AluSq SINE Alu 1 317 0 306 0 0 0 chr1 84081763 84081797 -158582556 + (TC)n Simple_repeat Simple_repeat 2 35 0 306 0 0 0 chr1 84081796 84081830 -158582523 + (TA)n Simple_repeat Simple_repeat 1 34 0 760 115 16 0 chr1 84082242 84082364 -158581989 + MSTA LTR MaLR 1 124 -304 436 259 165 58 chr1 84083128 84083630 -158580723 - L1ME LINE L1 -4983 1222 797 2025 131 40 37 chr1 84084461 84084835 -158579518 - THE1C LTR MaLR 0 375 1 588 95 24 0 chr1 84085017 84085101 -158579252 + AluS SINE Alu 4 89 -224 8103 178 52 14 chr1 84085202 84086314 -158578039 - L1MA9 LINE L1 -233 6079 5010 303 71 0 0 chr1 84086314 84086356 -158577997 + (TA)n Simple_repeat Simple_repeat 2 43 0 8103 178 52 14 chr1 84086356 84087033 -158577320 - L1MA9 LINE L1 -1302 5010 4360 1695 119 7 90 chr1 84087033 84087374 -158576979 - AluSx SINE Alu 0 315 1 8103 178 52 14 chr1 84087374 84088176 -158576177 - L1MA9 LINE L1 -1952 4360 3383 1199 180 3 109 chr1 84088326 84088610 -158575743 + AluJo SINE Alu 48 301 -11 208 277 0 0 chr1 84088648 84088695 -158575658 + (CAG)n Simple_repeat Simple_repeat 2 48 0 197 352 11 11 chr1 84088774 84088862 -158575491 - MIR SINE MIR -155 107 20 1518 180 71 3 chr1 84089415 84089698 -158574655 + AluJo SINE Alu 1 302 -10 305 194 19 28 chr1 84089698 84089806 -158574547 + G-rich Low_complexity Low_complexity 4 110 0 519 175 16 16 chr1 84089808 84089934 -158574419 + A-rich Low_complexity Low_complexity 1 126 0 323 357 1 11 chr1 84090147 84090273 -158574080 - MIR SINE MIR -82 126 3 241 306 82 0 chr1 84091132 84091217 -158573136 - MIR SINE MIR -2 260 169 363 53 0 0 chr1 84091322 84091379 -158572974 - L1 LINE L1 -1433 4713 4657 1086 265 60 9 chr1 84091578 84091910 -158572443 - MER50-int LTR ERV1 -843 4028 3680 2250 120 0 7 chr1 84091916 84092225 -158572128 + AluSx SINE Alu 2 308 -4 1204 166 85 94 chr1 84092232 84092527 -158571826 - MER50-int LTR ERV1 -2239 4092 3796 1743 176 30 3 chr1 84092527 84092829 -158571524 + AluJo SINE Alu 1 310 -2 1204 166 85 94 chr1 84092829 84093110 -158571243 - MER50-int LTR ERV1 -2535 3796 3499 466 286 28 32 chr1 84093353 84093596 -158570757 - MER50-int LTR ERV1 -2550 4184 2337 364 155 25 42 chr1 84093614 84093723 -158570630 - MER50-int LTR ERV1 -2509 3838 2409 1239 154 38 48 chr1 84093826 84094197 -158570156 - MER50-int LTR ERV1 -6580 1540 1174 22 56 0 0 chr1 84094728 84094764 -158569589 + AT_rich Low_complexity Low_complexity 1 36 0 226 264 224 0 chr1 84096424 84096549 -158567804 - MIR SINE MIR -63 199 47 642 192 51 26 chr1 84097047 84097203 -158567150 - MIR SINE MIR -19 243 84 2246 108 0 10 chr1 84097337 84097643 -158566710 + AluSx SINE Alu 1 303 -9 683 197 0 7 chr1 84097922 84098064 -158566289 + MER20 DNA MER1_type 78 218 -1 2353 106 0 0 chr1 84098435 84098737 -158565616 + AluSx SINE Alu 5 306 -6 25 0 0 0 chr1 84099388 84099413 -158564940 + AT_rich Low_complexity Low_complexity 1 25 0 769 236 55 5 chr1 84099635 84099834 -158564519 - MER58A DNA MER1_type -15 209 1 10405 218 38 17 chr1 84100208 84102784 -158561569 + L1 LINE L1 2380 5009 -1137 11039 80 5 0 chr1 84103063 84105250 -158559103 - L1PA7 LINE L1 0 6154 3964 1407 134 9 5 chr1 84105369 84105586 -158558767 - Tigger3(Golem) DNA MER2_type -303 2726 2509 923 185 0 77 chr1 84105592 84105787 -158558566 - Tigger3(Golem) DNA MER2_type -2848 181 2 295 298 9 79 chr1 84106791 84106905 -158557448 + MIR3 SINE MIR 83 188 -20 334 250 106 19 chr1 84106976 84107080 -158557273 - MIR3 SINE MIR -51 157 45 2252 85 0 3 chr1 84107829 84108111 -158556242 + AluSq SINE Alu 1 281 -32 228 35 0 0 chr1 84108111 84108140 -158556213 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 281 303 76 42 chr1 84108675 84108794 -158555559 + MIR SINE MIR 22 144 -118 1802 164 0 7 chr1 84108917 84109210 -158555143 - AluJb SINE Alu -21 291 1 912 129 0 0 chr1 84110659 84110783 -158553570 + AluSg/x SINE Alu 172 295 -15 2361 108 0 0 chr1 84111524 84111830 -158552523 + AluSc SINE Alu 1 306 -3 1020 206 106 0 chr1 84112212 84112411 -158551942 + MER58A DNA MER1_type 1 220 -4 2227 216 75 6 chr1 84112651 84113201 -158551152 - L1ME1 LINE L1 -5 6161 5574 456 230 31 84 chr1 84113218 84113409 -158550944 - L1MC4 LINE L1 0 8042 7862 1503 211 0 18 chr1 84113752 84114032 -158550321 - AluJb SINE Alu -37 275 1 429 259 8 38 chr1 84114113 84114244 -158550109 + L2 LINE L2 3178 3304 -9 1894 157 3 3 chr1 84114641 84114934 -158549419 + AluJo SINE Alu 1 293 -19 1969 138 0 36 chr1 84115121 84115426 -158548927 - AluSx SINE Alu -18 294 1 1434 190 43 0 chr1 84115617 84115870 -158548483 - AluJo SINE Alu -9 303 40 392 172 92 0 chr1 84115898 84115985 -158548368 - MER5C DNA MER1_type 0 324 230 447 171 181 0 chr1 84115996 84116101 -158548252 - MER5C DNA MER1_type -200 124 1 585 277 129 42 chr1 84116101 84116628 -158547725 - L1MEd LINE L1 -5024 1095 523 305 190 0 0 chr1 84116662 84116720 -158547633 + Alu SINE Alu 245 302 0 1919 168 3 0 chr1 84117420 84117723 -158546630 - AluJb SINE Alu -8 304 1 2164 105 7 13 chr1 84117830 84118135 -158546218 - AluSg SINE Alu -7 303 1 7802 128 19 8 chr1 84118275 84119455 -158544898 + L1P LINE L1 11 1202 -4944 * 12786 57 11 0 chr1 84119454 84121369 -158542984 + L1P2 LINE L1 3745 5677 -477 2171 155 101 56 chr1 84121369 84121675 -158542678 - MER21A LTR ERV1 -71 860 526 2054 124 0 31 chr1 84121675 84121998 -158542355 - AluSq SINE Alu 0 313 1 2171 155 101 56 chr1 84121998 84122134 -158542219 - MER21A LTR ERV1 -405 526 398 250 191 0 0 chr1 84122134 84122181 -158542172 + LTR30 LTR ERV1 1 47 -675 1686 91 162 234 chr1 84122181 84122838 -158541515 + LTR12 LTR ERV1 48 581 -133 1096 173 24 9 chr1 84122838 84123085 -158541268 - MER21B LTR ERV1 -548 315 32 761 249 0 11 chr1 84123280 84123457 -158540896 - AluSp SINE Alu -4 309 135 1085 189 154 0 chr1 84123609 84123842 -158540511 - AluSx SINE Alu -43 269 1 1196 124 38 52 chr1 84123947 84124156 -158540197 + AluSg/x SINE Alu 94 299 -13 833 132 110 0 chr1 84124156 84124292 -158540061 + FRAM SINE Alu 1 40 0 1057 253 70 7 chr1 84124292 84124592 -158539761 + L1MD3 LINE L1 7592 7910 -85 875 137 0 0 chr1 84124642 84124766 -158539587 + FLAM_C SINE Alu 1 124 -19 293 279 115 0 chr1 84125702 84125806 -158538547 - MIR3 SINE MIR -8 200 85 1654 221 147 94 chr1 84127503 84127981 -158536372 - MER21B LTR ERV1 -124 739 211 1616 161 91 78 chr1 84127981 84128366 -158535987 - MLT1B LTR MaLR 0 390 1 1654 221 147 94 chr1 84128366 84128589 -158535764 - MER21B LTR ERV1 -652 211 1 675 210 115 13 chr1 84128833 84128990 -158535363 + FAM SINE Alu 1 173 -2 2088 108 17 3 chr1 84128993 84129290 -158535063 + AluSq SINE Alu 3 303 -10 276 100 0 0 chr1 84129290 84129330 -158535023 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 243 146 0 0 chr1 84129368 84129409 -158534944 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 390 255 73 10 chr1 84130177 84130297 -158534056 - LTR37A LTR ERV1 -60 408 297 2458 86 3 0 chr1 84130297 84130601 -158533752 + AluSp SINE Alu 1 305 -8 390 255 73 10 chr1 84130601 84130632 -158533721 - LTR37A LTR ERV1 -171 297 269 2316 132 15 29 chr1 84130632 84130974 -158533379 + MER1B DNA MER1_type 1 337 0 390 255 73 10 chr1 84130974 84131023 -158533330 - LTR37A LTR ERV1 -199 269 198 192 77 0 0 chr1 84131052 84131078 -158533275 + (T)n Simple_repeat Simple_repeat 1 26 0 1174 273 95 75 chr1 84131454 84131940 -158532413 - MER31-int LTR ERV1 -832 4104 3594 1789 193 0 0 chr1 84131940 84132241 -158532112 + AluJb SINE Alu 1 301 -11 1174 273 95 75 chr1 84132241 84132566 -158531787 - MER31-int LTR ERV1 -1342 3594 3277 1646 137 76 12 chr1 84132724 84133042 -158531311 + THE1C LTR MaLR 1 375 0 647 237 130 55 chr1 84133273 84133459 -158530894 - L1MC4a LINE L1 -1853 5955 5734 2008 125 0 30 chr1 84133459 84133780 -158530573 - AluSx SINE Alu 0 312 1 647 237 130 55 chr1 84133780 84133899 -158530454 - L1MC4a LINE L1 -2074 5734 5625 1587 179 0 38 chr1 84133921 84134240 -158530113 + AluJo SINE Alu 1 307 -5 370 274 12 0 chr1 84134274 84134358 -158529995 + L2 LINE L2 3225 3309 -4 274 263 153 50 chr1 84134733 84134890 -158529463 + L1MEd LINE L1 845 984 -5388 2592 121 72 15 chr1 84134890 84135295 -158529058 + MSTA LTR MaLR 1 428 0 274 263 153 50 chr1 84135295 84135337 -158529016 + L1MEd LINE L1 984 1020 -5352 1328 187 61 58 chr1 84135337 84135680 -158528673 - MER2 DNA MER2_type 0 344 1 274 263 153 50 chr1 84135680 84135760 -158528593 + L1MEd LINE L1 1020 1154 -5218 476 259 182 7 chr1 84135799 84135942 -158528411 - MER5A DNA MER1_type -1 188 21 361 292 72 82 chr1 84135969 84136074 -158528279 + L1MEd LINE L1 1267 1372 -5000 2391 87 7 7 chr1 84136074 84136383 -158527970 + AluSx SINE Alu 1 309 -3 361 292 72 82 chr1 84136383 84136437 -158527916 + L1MEd LINE L1 1372 1425 -4947 1617 288 49 77 chr1 84136437 84136568 -158527785 - MER115 DNA AcHobo -1 692 559 1852 150 0 27 chr1 84136568 84136868 -158527485 + AluJb SINE Alu 5 296 -16 2232 104 6 25 chr1 84136869 84137186 -158527167 + AluSq SINE Alu 1 311 -2 1617 288 49 77 chr1 84137186 84137201 -158527152 - MER115 DNA AcHobo -134 559 545 1735 177 11 0 chr1 84137201 84137484 -158526869 + AluJb SINE Alu 1 286 -26 222 37 0 0 chr1 84137485 84137512 -158526841 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 1617 288 49 77 chr1 84137512 84138072 -158526281 - MER115 DNA AcHobo -147 546 1 361 292 72 82 chr1 84138072 84138106 -158526247 + L1MEd LINE L1 1425 1459 -4913 269 303 8 8 chr1 84138116 84138238 -158526115 + L1MEd LINE L1 1367 1488 -4896 387 0 0 0 chr1 84138322 84138365 -158525988 + (TA)n Simple_repeat Simple_repeat 1 43 0 1529 163 70 42 chr1 84138505 84138836 -158525517 + THE1C LTR MaLR 1 340 -35 2095 126 17 0 chr1 84138837 84139138 -158525215 - AluSx SINE Alu -6 306 1 2300 102 0 0 chr1 84139369 84139672 -158524681 + AluY SINE Alu 1 303 -8 352 313 49 49 chr1 84139829 84140053 -158524300 + L1MEd LINE L1 2204 2427 -4136 269 317 55 15 chr1 84140083 84140282 -158524071 + L1MEd LINE L1 2446 2652 -3730 1325 165 73 4 chr1 84140307 84140567 -158523786 + AluJo SINE Alu 21 298 -14 845 193 7 13 chr1 84140567 84140717 -158523636 + AluJo/FRAM SINE Alu 134 282 -30 823 128 0 16 chr1 84140823 84140948 -158523405 + FLAM_C SINE Alu 21 143 0 257 247 58 65 chr1 84140954 84141108 -158523245 + L1MEd LINE L1 2681 2833 -3549 39213 75 11 11 chr1 84141314 84147460 -158516893 + L1PA4 LINE L1 11 6153 -2 5106 73 27 9 chr1 84147498 84148157 -158516196 + L1PA6 LINE L1 5478 6148 -6 203 162 0 0 chr1 84148197 84148234 -158516119 + (TGG)n Simple_repeat Simple_repeat 3 39 0 254 179 0 54 chr1 84148326 84148382 -158515971 - L2 LINE L2 -4 3309 3257 1444 181 3 40 chr1 84148434 84148661 -158515692 - AluJo SINE Alu -19 293 78 2352 171 119 103 chr1 84148661 84148745 -158515608 + LTR8 LTR ERV1 1 82 -609 2141 59 33 0 chr1 84148745 84149018 -158515335 - AluY SINE Alu -20 291 10 2352 171 119 103 chr1 84149018 84149613 -158514740 + LTR8 LTR ERV1 82 691 0 1444 181 3 40 chr1 84149613 84149689 -158514664 - AluJo SINE Alu -234 78 1 21 0 0 0 chr1 84149719 84149740 -158514613 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 84150639 84150662 -158513691 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 84150934 84150954 -158513399 + (TTG)n Simple_repeat Simple_repeat 2 21 0 648 165 52 0 chr1 84150958 84151073 -158513280 - AluJb SINE Alu -20 292 172 1610 186 53 7 chr1 84152021 84152306 -158512047 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 84154063 84154084 -158510269 + AT_rich Low_complexity Low_complexity 1 21 0 1315 150 154 0 chr1 84154427 84154660 -158509693 - AluSx SINE Alu -43 269 1 783 180 0 43 chr1 84154668 84154807 -158509546 - FLAM_C SINE Alu 0 133 1 283 252 70 17 chr1 84156447 84156562 -158507791 - MER58 DNA MER1_type -2153 267 147 1941 106 57 0 chr1 84156565 84156829 -158507524 - AluSg SINE Alu -31 279 1 1266 127 6 0 chr1 84156941 84157114 -158507239 - AluSx SINE Alu -138 174 1 34 42 0 0 chr1 84158477 84158525 -158505828 + AT_rich Low_complexity Low_complexity 1 48 0 261 0 0 0 chr1 84158899 84158928 -158505425 + (T)n Simple_repeat Simple_repeat 1 29 0 1668 125 49 24 chr1 84159065 84159352 -158505001 - AluSg SINE Alu -16 294 1 1225 218 48 31 chr1 84159419 84159708 -158504645 - AluJo SINE Alu -8 294 1 1732 135 13 45 chr1 84161369 84161680 -158502673 + AluJb SINE Alu 1 301 -11 224 232 32 97 chr1 84161782 84161849 -158502504 + L2 LINE L2 1913 1983 -1331 751 156 23 8 chr1 84161849 84161977 -158502376 - FLAM_C SINE Alu -3 130 1 224 232 32 97 chr1 84161977 84162064 -158502289 + L2 LINE L2 1983 2057 -1257 236 277 61 68 chr1 84162153 84162277 -158502076 + L2 LINE L2 2243 2367 -947 1987 148 3 7 chr1 84162277 84162575 -158501778 - AluJo SINE Alu -15 297 1 236 277 61 68 chr1 84162575 84162598 -158501755 + L2 LINE L2 2367 2389 -925 264 308 39 0 chr1 84162965 84163043 -158501310 - MIR SINE MIR -74 188 108 226 316 71 112 chr1 84163080 84163349 -158501004 - L2 LINE L2 -90 3182 2925 561 333 26 13 chr1 84163487 84163718 -158500635 - L2 LINE L2 -862 2452 2219 407 288 107 9 chr1 84163847 84164062 -158500291 + LTR33 LTR ERVL 275 510 -11 380 344 115 29 chr1 84164063 84164543 -158499810 - L2 LINE L2 -525 2789 2269 765 219 78 5 chr1 84164544 84164736 -158499617 + MER3 DNA MER1_type 4 209 0 951 207 59 23 chr1 84164741 84164997 -158499356 + MER58B DNA MER1_type 66 330 -11 2133 129 3 13 chr1 84165000 84165303 -158499050 + AluSq SINE Alu 1 300 -13 1704 173 18 4 chr1 84165314 84165586 -158498767 + AluJo SINE Alu 6 281 -31 1851 160 17 3 chr1 84165604 84165904 -158498449 + AluJo SINE Alu 1 304 -8 184 309 62 31 chr1 84165965 84166127 -158498226 - L2 LINE L2 -1077 2237 2071 191 340 41 10 chr1 84166200 84166297 -158498056 - MIR SINE MIR -10 252 153 2445 143 33 14 chr1 84166443 84166863 -158497490 - MSTC LTR MaLR 0 428 1 197 355 0 0 chr1 84166891 84166953 -158497400 - L2 LINE L2 -1409 1905 1844 2296 110 7 0 chr1 84167054 84167363 -158496990 + AluSq SINE Alu 1 311 -2 22 35 0 0 chr1 84167949 84167978 -158496375 + AT_rich Low_complexity Low_complexity 1 29 0 236 252 47 47 chr1 84168035 84168142 -158496211 - L1ME LINE L1 -501 5661 5555 2324 104 3 7 chr1 84168217 84168525 -158495828 - AluSg SINE Alu -3 307 1 2285 113 7 0 chr1 84168540 84168842 -158495511 - AluSg SINE Alu -6 304 1 288 300 46 8 chr1 84168933 84169063 -158495290 - L1ME LINE L1 -373 5748 5614 2146 139 3 0 chr1 84169094 84169404 -158494949 - AluSx SINE Alu -1 311 1 235 288 45 18 chr1 84169415 84169526 -158494827 - L1ME LINE L1 -516 5605 5492 338 256 133 44 chr1 84169654 84169924 -158494429 - L1ME LINE L1 -613 5551 5258 2649 51 0 0 chr1 84169953 84170264 -158494089 - AluY SINE Alu 0 311 1 476 230 52 99 chr1 84170315 84170567 -158493786 - L1ME LINE L1 -1351 4795 4556 21 95 0 0 chr1 84170632 84170695 -158493658 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr1 84171019 84171043 -158493310 + AT_rich Low_complexity Low_complexity 1 24 0 6101 146 23 27 chr1 84171177 84172391 -158491962 + Ricksha_b DNA DNA 91 1654 -9 1103 197 97 76 chr1 84172647 84172936 -158491417 - AluJb SINE Alu -5 297 3 22 0 0 0 chr1 84173051 84173073 -158491280 + AT_rich Low_complexity Low_complexity 1 22 0 2102 115 0 56 chr1 84173347 84173668 -158490685 - AluSx SINE Alu -9 303 1 1774 138 12 75 chr1 84173949 84174268 -158490085 - AluSx SINE Alu -13 299 1 2079 126 0 14 chr1 84174567 84174893 -158489460 - AluSx SINE Alu 0 322 1 22 94 0 0 chr1 84174901 84174965 -158489388 + AT_rich Low_complexity Low_complexity 1 64 0 198 0 0 0 chr1 84175780 84175802 -158488551 + (TTG)n Simple_repeat Simple_repeat 3 24 0 382 244 0 0 chr1 84175816 84175902 -158488451 - MLT1K LTR MaLR -13 575 490 2540 152 104 20 chr1 84175928 84176129 -158488224 - MER67A LTR ERV1 0 543 360 2225 99 0 10 chr1 84176129 84176431 -158487922 + AluSc SINE Alu 1 299 -10 2540 152 104 20 chr1 84176431 84176730 -158487623 - MER67A LTR ERV1 -183 360 1 258 359 26 26 chr1 84176793 84176985 -158487368 - MLT1K LTR MaLR -236 352 161 527 232 133 20 chr1 84177100 84177251 -158487102 + MIR SINE MIR 2 169 -93 * 578 271 8 0 chr1 84177249 84177382 -158486971 - L2 LINE L2 -231 3082 2949 770 188 8 0 chr1 84177447 84177575 -158486778 + FLAM_A SINE Alu 1 129 -4 263 348 80 29 chr1 84177611 84177749 -158486604 + MIR SINE MIR 20 164 -98 1689 178 0 44 chr1 84177889 84178187 -158486166 + AluJo SINE Alu 3 287 -25 23 0 0 0 chr1 84178859 84178882 -158485471 + AT_rich Low_complexity Low_complexity 1 23 0 448 218 0 11 chr1 84178946 84179033 -158485320 + L2 LINE L2 3195 3280 -33 1706 158 75 0 chr1 84179466 84179745 -158484608 + AluSg SINE Alu 1 300 -10 2151 140 0 10 chr1 84180337 84180644 -158483709 - AluSq SINE Alu -9 304 1 652 234 8 0 chr1 84180673 84180797 -158483556 - FLAM_A SINE Alu -8 125 1 833 179 29 0 chr1 84180900 84181073 -158483280 + L1M3 LINE L1 5286 5463 -717 1433 271 61 36 chr1 84181631 84182137 -158482216 + L2 LINE L2 2447 2965 -349 866 262 22 13 chr1 84182085 84182310 -158482043 + MIR SINE MIR 32 258 -4 * 193 333 92 36 chr1 84182346 84182470 -158481883 + L2 LINE L2 2979 3119 -194 2362 93 0 13 chr1 84182470 84182783 -158481570 - AluY SINE Alu -2 309 1 193 333 92 36 chr1 84182783 84182853 -158481500 + L2 LINE L2 3119 3184 -129 1790 151 11 4 chr1 84182927 84183205 -158481148 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr1 84183205 84183225 -158481128 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 382 317 83 33 chr1 84183241 84183361 -158480992 + L2 LINE L2 3147 3272 0 2159 123 0 16 chr1 84183417 84183733 -158480620 - AluSx SINE Alu -1 311 1 191 286 125 0 chr1 84183988 84184044 -158480309 + MER5A DNA MER1_type 7 69 -120 3551 37 0 0 chr1 84184045 84184500 -158479853 - L1P LINE L1 -2503 3643 3189 6483 22 0 0 chr1 84184500 84185323 -158479030 + L1P LINE L1 2366 3188 -2958 1588 200 7 10 chr1 84185338 84185628 -158478725 - AluJb SINE Alu -23 289 1 189 319 0 0 chr1 84185630 84185677 -158478676 + MER5A DNA MER1_type 63 109 -80 2407 65 0 26 chr1 84185717 84186027 -158478326 + AluY SINE Alu 1 302 -9 26 50 0 0 chr1 84186306 84186346 -158478007 + AT_rich Low_complexity Low_complexity 1 40 0 201 39 0 0 chr1 84186536 84186562 -158477791 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1419 239 75 14 chr1 84186648 84187088 -158477265 - MLT1C LTR MaLR 0 467 1 18782 98 12 4 chr1 84187170 84190749 -158473604 - L1PA8 LINE L1 -4 6168 2577 5730 100 3 22 chr1 84190749 84191653 -158472700 + L1PA8 LINE L1 1681 2567 -3579 4982 137 13 4 chr1 84191704 84192522 -158471831 + L1PA16 LINE L1 5323 6148 -18 37090 81 9 2 chr1 84192543 84198652 -158465701 + L1PA5 LINE L1 2 6153 -1 514 296 197 22 chr1 84199236 84199601 -158464752 + L2 LINE L2 1469 1897 -1417 268 314 64 59 chr1 84199771 84199991 -158464362 + LTR16A1 LTR ERVL 166 386 -71 1394 181 0 0 chr1 84200004 84200230 -158464123 - AluJb SINE Alu 0 312 87 381 228 0 0 chr1 84200230 84200309 -158464044 + LTR16A1 LTR ERVL 379 457 0 1195 357 58 26 chr1 84200321 84200719 -158463634 + L2 LINE L2 1908 2292 -1022 1546 185 115 15 chr1 84200719 84201049 -158463304 + MLT1A1 LTR MaLR 1 363 -2 1195 357 58 26 chr1 84201049 84201104 -158463249 + L2 LINE L2 2292 2344 -970 2248 106 7 3 chr1 84201104 84201405 -158462948 - AluSx SINE Alu -10 302 1 1195 357 58 26 chr1 84201405 84201745 -158462608 + L2 LINE L2 2344 2727 -587 2302 192 35 27 chr1 84201745 84202225 -158462128 - MLT1D LTR MaLR 0 505 22 270 321 68 87 chr1 84202250 84202614 -158461739 + L2 LINE L2 2724 3078 -194 23 68 0 0 chr1 84202826 84202870 -158461483 + AT_rich Low_complexity Low_complexity 1 44 0 2230 111 0 0 chr1 84202931 84203220 -158461133 - AluSx SINE Alu -11 301 13 7740 21 1 0 chr1 84203327 84204396 -158459957 + L1PA3 LINE L1 5083 6152 -3 189 0 0 0 chr1 84204399 84204420 -158459933 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 262 331 57 85 chr1 84204453 84204770 -158459583 - L2 LINE L2 -31 3241 2934 231 36 0 0 chr1 84204871 84204899 -158459454 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 1559 220 20 0 chr1 84204910 84205215 -158459138 - AluJo SINE Alu -1 311 1 195 290 155 58 chr1 84205287 84205494 -158458859 - L2 LINE L2 -457 2857 2631 5485 71 28 21 chr1 84205621 84206103 -158458250 - MER4E LTR ERV1 0 766 276 8007 61 5 3 chr1 84206103 84207108 -158457245 + LTR13 LTR ERVK 1 1007 0 5485 71 28 21 chr1 84207108 84207386 -158456967 - MER4E LTR ERV1 -490 276 1 2369 81 3 0 chr1 84207531 84207828 -158456525 - AluSp SINE Alu -15 298 1 24 32 0 0 chr1 84208024 84208055 -158456298 + AT_rich Low_complexity Low_complexity 1 31 0 1930 150 3 0 chr1 84208055 84208341 -158456012 - AluJb SINE Alu -23 289 3 1963 189 20 20 chr1 84208507 84208903 -158455450 - MSTD LTR MaLR 0 396 1 6508 212 64 51 chr1 84208904 84210615 -158453738 - MSTD-int LTR MaLR -1 1734 2 1810 178 87 16 chr1 84210617 84210987 -158453366 - MSTD LTR MaLR 0 396 1 367 303 49 8 chr1 84210987 84211109 -158453244 - MIR SINE MIR -60 202 76 1812 197 29 74 chr1 84211242 84211689 -158452664 - MSTB2 LTR MaLR -16 441 15 1505 174 82 4 chr1 84212195 84212465 -158451888 + AluJb SINE Alu 1 291 -21 2260 112 0 0 chr1 84212662 84212949 -158451404 - AluSx SINE Alu -25 287 1 5261 236 36 16 chr1 84213385 84214438 -158449915 - L1MEc LINE L1 -2476 3739 2708 216 0 0 0 chr1 84214438 84214462 -158449891 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5261 236 36 16 chr1 84214462 84215119 -158449234 - L1MEc LINE L1 -3507 2708 2021 1964 153 7 0 chr1 84215119 84215427 -158448926 - AluSx SINE Alu -2 310 1 5261 236 36 16 chr1 84215427 84215570 -158448783 - L1MEc LINE L1 -4194 2021 1882 4571 161 27 14 chr1 84215580 84216553 -158447800 - L1MB8 LINE L1 -9 6169 5185 2170 117 0 0 chr1 84216769 84217082 -158447271 - AluSx SINE Alu 0 313 1 940 218 54 28 chr1 84217082 84217934 -158446419 - L1MC4 LINE L1 -534 7508 6487 1669 217 0 0 chr1 84218751 84219055 -158445298 - AluJo SINE Alu -8 304 1 1579 178 27 132 chr1 84219055 84219577 -158444776 - MLT1C LTR MaLR 0 467 1 35546 101 12 10 chr1 84220007 84226134 -158438219 - L1PA7 LINE L1 -2 6152 11 22 56 0 0 chr1 84226760 84226796 -158437557 + AT_rich Low_complexity Low_complexity 1 36 0 724 167 0 0 chr1 84227023 84227137 -158437216 - LTR40a LTR ERVL 0 519 406 830 253 80 95 chr1 84227137 84227537 -158436816 + L2 LINE L2 1668 2061 -1253 2143 250 58 39 chr1 84227547 84228499 -158435854 - L1ME3A LINE L1 0 6170 5204 1005 291 111 24 chr1 84228577 84228955 -158435398 + LTR16C LTR ERVL 71 481 -10 271 323 8 24 chr1 84228962 84229086 -158435267 - L1ME3A LINE L1 -957 5189 5068 507 229 55 0 chr1 84229161 84229270 -158435083 - MER74A LTR ERVL -79 479 365 1011 274 40 20 chr1 84229485 84229886 -158434467 - L1ME3A LINE L1 -1069 5077 4669 1595 165 47 18 chr1 84229901 84230180 -158434173 - AluJb SINE Alu -24 288 2 977 121 0 0 chr1 84230416 84230548 -158433805 + AluSq/x SINE Alu 1 132 -181 34 0 0 0 chr1 84230690 84230724 -158433629 + AT_rich Low_complexity Low_complexity 1 34 0 2013 240 119 25 chr1 84231357 84232162 -158432191 - L1MC4 LINE L1 0 8042 7162 2314 126 25 3 chr1 84232291 84232647 -158431706 + THE1B LTR MaLR 1 364 0 10081 102 54 9 chr1 84232647 84234159 -158430194 + THE1B-int LTR MaLR 1 1580 0 2278 117 34 3 chr1 84234161 84234512 -158429841 + THE1B LTR MaLR 3 364 0 1662 171 31 24 chr1 84235086 84235378 -158428975 + AluJb SINE Alu 1 294 -18 1088 166 8 85 chr1 84235421 84235656 -158428697 + MER20 DNA MER1_type 1 217 -2 187 265 86 115 chr1 84235669 84235948 -158428405 + L2 LINE L2 2815 3085 -187 429 201 153 62 chr1 84236423 84236567 -158427786 + MER5B DNA MER1_type 1 157 -21 301 350 248 6 chr1 84236570 84236921 -158427432 - L3 LINE CR1 -561 1016 581 391 279 52 37 chr1 84236974 84237110 -158427243 - MIR3 SINE MIR -63 145 8 255 277 148 10 chr1 84237252 84237353 -158427000 - L2 LINE L2 -6 3307 3193 239 292 58 33 chr1 84237365 84237485 -158426868 - L3 LINE CR1 -1208 369 247 23 0 0 0 chr1 84237736 84237759 -158426594 + AT_rich Low_complexity Low_complexity 1 23 0 1775 163 16 49 chr1 84238032 84238418 -158425935 - THE1C LTR MaLR -2 373 1 324 320 91 43 chr1 84238508 84238858 -158425495 + L1ME LINE L1 5351 5717 -404 8744 141 30 23 chr1 84238993 84240453 -158423900 + Tigger4(Zombi) DNA MER2_type -1 1468 -1263 5490 114 14 16 chr1 84240458 84241315 -158423038 - L1PA14 LINE L1 -3 6158 5304 7629 119 21 59 chr1 84241322 84241388 -158422965 + Tigger4(Zombi) DNA MER2_type 1448 1515 -1216 1485 205 21 0 chr1 84241388 84241671 -158422682 - AluJo SINE Alu -22 290 2 7629 119 21 59 chr1 84241671 84241943 -158422410 + Tigger4(Zombi) DNA MER2_type 1515 1796 -935 1839 169 0 3 chr1 84241943 84242244 -158422109 - AluSx SINE Alu -12 300 1 7629 119 21 59 chr1 84242244 84243239 -158421114 + Tigger4(Zombi) DNA MER2_type 1796 2731 0 21 36 0 0 chr1 84244345 84244373 -158419980 + AT_rich Low_complexity Low_complexity 1 28 0 327 266 106 0 chr1 84244773 84244867 -158419486 + L2 LINE L2 3167 3270 -2 391 94 0 0 chr1 84245518 84245571 -158418782 - Tigger4(Zombi) DNA MER2_type -1171 1560 1508 1648 153 6 81 chr1 84245573 84245893 -158418460 + AluJo SINE Alu 2 297 -15 257 263 12 0 chr1 84246474 84246554 -158417799 - MER103 DNA DNA -69 97 17 21 36 0 0 chr1 84247786 84247814 -158416539 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr1 84247994 84248040 -158416313 + AT_rich Low_complexity Low_complexity 1 46 0 283 183 204 43 chr1 84248085 84248178 -158416175 + MIR3 SINE MIR 65 155 -53 1121 178 4 61 chr1 84249663 84249893 -158414460 + AluJo SINE Alu 66 282 -30 1815 155 3 31 chr1 84250045 84250362 -158413991 - AluJb SINE Alu -2 310 3 21 0 0 0 chr1 84251263 84251284 -158413069 + AT_rich Low_complexity Low_complexity 1 21 0 635 146 152 80 chr1 84251506 84251657 -158412696 + MER20 DNA MER1_type 2 163 -56 239 286 91 0 chr1 84251681 84251758 -158412595 + MER20 DNA MER1_type 136 219 0 345 274 0 0 chr1 84251997 84252081 -158412272 + L1MC4 LINE L1 6612 6695 -1347 270 0 0 0 chr1 84252081 84252111 -158412242 + (TG)n Simple_repeat Simple_repeat 2 31 0 184 289 0 0 chr1 84252125 84252163 -158412190 - L2 LINE L2 -678 2636 2599 276 100 56 33 chr1 84252235 84252325 -158412028 + (TA)n Simple_repeat Simple_repeat 1 92 0 216 0 0 0 chr1 84252369 84252393 -158411960 + (TG)n Simple_repeat Simple_repeat 2 25 0 266 213 0 13 chr1 84252488 84252563 -158411790 + (TA)n Simple_repeat Simple_repeat 1 74 0 405 54 102 24 chr1 84252600 84252766 -158411587 + (TA)n Simple_repeat Simple_repeat 2 180 0 23 54 0 0 chr1 84252782 84252819 -158411534 + AT_rich Low_complexity Low_complexity 1 37 0 632 49 98 0 chr1 84252832 84252996 -158411357 + (TA)n Simple_repeat Simple_repeat 1 180 0 397 56 82 46 chr1 84253033 84253368 -158410985 + (TA)n Simple_repeat Simple_repeat 1 347 0 306 144 84 12 chr1 84253373 84253540 -158410813 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 305 144 89 0 chr1 84253586 84253732 -158410621 + (TATAG)n Simple_repeat Simple_repeat 2 160 0 437 46 81 46 chr1 84253772 84253945 -158410408 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 36 0 0 chr1 84253949 84253977 -158410376 + AT_rich Low_complexity Low_complexity 1 28 0 477 116 73 0 chr1 84254020 84254184 -158410169 + (TA)n Simple_repeat Simple_repeat 1 176 0 245 29 29 0 chr1 84254247 84254281 -158410072 + (TA)n Simple_repeat Simple_repeat 2 36 0 192 227 387 0 chr1 84254353 84254428 -158409925 + L2 LINE L2 3202 3305 -8 182 159 227 0 chr1 84254435 84254479 -158409874 - MIR SINE MIR -73 135 82 1710 140 70 39 chr1 84254523 84254880 -158409473 + THE1C LTR MaLR 8 375 0 472 286 96 0 chr1 84254989 84255142 -158409211 - MIR SINE MIR -40 168 23 210 37 0 0 chr1 84255221 84255248 -158409105 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 189 196 0 0 chr1 84255495 84255546 -158408807 + (TTA)n Simple_repeat Simple_repeat 1 51 0 23 0 0 0 chr1 84256034 84256057 -158408296 + AT_rich Low_complexity Low_complexity 1 23 0 492 172 0 0 chr1 84256058 84256145 -158408208 - L1MA5A LINE L1 -17 6280 6194 1291 72 0 0 chr1 84256318 84256485 -158407868 - AluY SINE Alu -11 300 134 24 0 0 0 chr1 84258093 84258117 -158406236 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr1 84258710 84258743 -158405610 + AT_rich Low_complexity Low_complexity 1 33 0 1920 158 3 0 chr1 84258867 84259177 -158405176 - AluJb SINE Alu -1 311 1 1427 245 87 24 chr1 84259354 84259791 -158404562 + MLT2B1 LTR ERVL 3 356 -41 264 77 0 0 chr1 84259803 84259842 -158404511 + (TC)n Simple_repeat Simple_repeat 1 39 0 225 57 114 0 chr1 84259858 84259893 -158404460 + MLT2B1 LTR ERVL 477 515 0 1001 231 19 9 chr1 84259904 84260120 -158404233 + ERVL-B1 LTR ERVL 174 391 -5373 652 241 49 97 chr1 84260247 84260596 -158403757 + Charlie4a DNA MER1_type 1 332 -176 4399 188 89 11 chr1 84260631 84261816 -158402537 + ERVL-B1 LTR ERVL 378 1729 -4035 * 8764 162 40 9 chr1 84261813 84263341 -158401012 + ERVL-B1 LTR ERVL 4183 5757 -7 1330 246 150 20 chr1 84263341 84263761 -158400592 + MLT2B1 LTR ERVL 1 487 -33 470 17 17 0 chr1 84263761 84263820 -158400533 + (CA)n Simple_repeat Simple_repeat 2 61 0 1330 246 150 20 chr1 84263820 84263859 -158400494 + MLT2B1 LTR ERVL 487 520 0 726 109 0 18 chr1 84263866 84263976 -158400377 - AluSp/q SINE Alu -8 305 198 32 81 0 0 chr1 84264040 84264114 -158400239 + AT_rich Low_complexity Low_complexity 1 74 0 268 243 14 14 chr1 84264122 84264192 -158400161 + L2 LINE L2 3243 3312 -1 363 325 54 36 chr1 84264600 84264766 -158399587 + MER5A DNA MER1_type 20 188 -1 21 36 0 0 chr1 84265686 84265714 -158398639 + AT_rich Low_complexity Low_complexity 1 28 0 1241 110 0 0 chr1 84265946 84266110 -158398243 - AluSg/x SINE Alu -14 296 133 324 318 60 13 chr1 84266301 84266452 -158397901 + MIR SINE MIR 98 255 -7 47 0 0 0 chr1 84267210 84267257 -158397096 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr1 84267462 84267491 -158396862 + AT_rich Low_complexity Low_complexity 1 29 0 2071 101 0 17 chr1 84267722 84268033 -158396320 - AluSq SINE Alu 0 306 1 5791 126 16 5 chr1 84268447 84269386 -158394967 - L1MA4 LINE L1 0 6300 5352 228 331 19 70 chr1 84269398 84269555 -158394798 + L2 LINE L2 2935 3083 -189 1873 209 58 5 chr1 84269627 84270073 -158394280 - L1PA16 LINE L1 0 6166 5697 621 40 0 0 chr1 84270086 84270162 -158394191 + (TA)n Simple_repeat Simple_repeat 1 76 0 348 37 241 0 chr1 84270165 84270219 -158394134 - L1PA16 LINE L1 -549 5605 5539 * 4056 168 30 36 chr1 84270218 84271085 -158393268 - L1 LINE L1 -766 5562 4701 3981 170 81 5 chr1 84271116 84271929 -158392424 - L1 LINE L1 -1759 4569 3695 966 202 14 34 chr1 84271929 84272137 -158392216 - AluJb SINE Alu -1 311 108 5535 177 60 36 chr1 84272151 84273413 -158390940 - L1 LINE L1 -2624 3704 2378 1633 129 0 0 chr1 84273413 84273646 -158390707 - AluSg/x SINE Alu -8 302 70 5535 177 60 36 chr1 84273646 84273879 -158390474 - L1 LINE L1 -3950 2378 2152 330 13 114 0 chr1 84273886 84273965 -158390388 + (TA)n Simple_repeat Simple_repeat 1 88 0 659 242 17 58 chr1 84273973 84274213 -158390140 - L1 LINE L1 -4170 2158 1929 1315 87 0 0 chr1 84274225 84274397 -158389956 - AluY SINE Alu -8 303 132 2684 223 34 6 chr1 84274404 84275056 -158389297 - L1 LINE L1 -4411 1917 1285 225 0 0 0 chr1 84275056 84275081 -158389272 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 318 50 0 0 chr1 84275080 84275120 -158389233 + (TA)n Simple_repeat Simple_repeat 1 40 0 2684 223 34 6 chr1 84275081 84275176 -158389177 - L1 LINE L1 -5043 1285 1189 1372 170 31 0 chr1 84275176 84275405 -158388948 - AluSx SINE Alu -76 236 1 4898 197 36 32 chr1 84275408 84275544 -158388809 - L1 LINE L1 -4166 1162 1028 2198 121 0 0 chr1 84275544 84275841 -158388512 - AluSx SINE Alu -15 297 1 4898 197 36 32 chr1 84275841 84276848 -158387505 - L1 LINE L1 -4300 1028 15 1453 61 0 51 chr1 84276866 84277080 -158387273 - L1PA8 LINE L1 0 6172 5970 792 146 0 29 chr1 84277831 84277968 -158386385 - FLAM_C SINE Alu 0 133 1 184 416 67 7 chr1 84278297 84278446 -158385907 + L2 LINE L2 2656 2813 -501 21 36 0 0 chr1 84279495 84279523 -158384830 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 84280056 84280082 -158384271 + AT_rich Low_complexity Low_complexity 1 26 0 21 82 0 0 chr1 84281070 84281119 -158383234 + AT_rich Low_complexity Low_complexity 1 49 0 2222 119 0 0 chr1 84281243 84281554 -158382799 - AluSq SINE Alu -2 311 1 2614 226 54 28 chr1 84282366 84283053 -158381300 - L1ME1 LINE L1 -19 6147 5443 192 349 0 48 chr1 84283227 84283290 -158381063 - L2 LINE L2 -12 3260 3201 2403 98 14 0 chr1 84283910 84284256 -158380097 + L1PA11 LINE L1 5820 6170 -4 712 189 174 137 chr1 84284284 84284628 -158379725 + MLT1C LTR MaLR 34 467 0 2148 215 35 18 chr1 84285455 84285963 -158378390 - LTR40a LTR ERVL 0 519 3 26 30 0 0 chr1 84286609 84286642 -158377711 + AT_rich Low_complexity Low_complexity 1 33 0 4741 30 0 0 chr1 84286781 84287342 -158377011 - L1PA3 LINE L1 0 6155 5595 381 274 57 51 chr1 84287411 84287568 -158376785 + MER5B DNA MER1_type 10 167 -11 289 330 10 58 chr1 84287816 84287919 -158376434 - L2 LINE L2 -36 3236 3139 2348 46 0 0 chr1 84288154 84288469 -158375884 - AluY SINE Alu 0 315 1 2344 100 3 0 chr1 84289880 84290191 -158374162 - AluSp SINE Alu -1 312 1 236 293 101 11 chr1 84291129 84291229 -158373124 + MIR SINE MIR 24 132 -76 286 353 108 69 chr1 84291252 84291558 -158372795 - L2 LINE L2 0 3272 2955 278 253 44 0 chr1 84291916 84292007 -158372346 + L1MC4 LINE L1 6614 6708 -1334 372 316 51 8 chr1 84292419 84292536 -158371817 + L2 LINE L2 3187 3308 -5 210 336 149 34 chr1 84293256 84293491 -158370862 + L2 LINE L2 1967 2228 -1086 * 884 268 125 59 chr1 84293481 84294038 -158370315 - L2 LINE L2 0 3313 2704 249 269 259 0 chr1 84294069 84294177 -158370176 - L2 LINE L2 -722 2592 2457 285 280 13 0 chr1 84294180 84294255 -158370098 + L2 LINE L2 2281 2356 -958 1895 169 111 25 chr1 84294333 84294729 -158369624 + MLT1D LTR MaLR 76 505 0 223 337 140 32 chr1 84295103 84295382 -158368971 + L2 LINE L2 2606 2914 -400 480 327 16 105 chr1 84295459 84295765 -158368588 + L2 LINE L2 2992 3270 -2 209 273 219 42 chr1 84295895 84296155 -158368198 + L3 LINE CR1 1100 1405 -172 252 250 10 106 chr1 84296158 84296262 -158368091 - L2 LINE L2 0 3313 3220 1386 278 59 89 chr1 84296331 84296608 -158367745 - L2 LINE L2 -234 3079 2795 2265 62 39 23 chr1 84296608 84296913 -158367440 - AluY SINE Alu -1 310 1 1386 278 59 89 chr1 84296913 84297546 -158366807 - L2 LINE L2 -518 2795 2190 23 33 0 0 chr1 84297546 84297576 -158366777 + AT_rich Low_complexity Low_complexity 1 30 0 451 174 14 0 chr1 84297629 84297773 -158366580 + (TA)n Simple_repeat Simple_repeat 1 146 0 275 369 141 0 chr1 84297801 84297950 -158366403 + L3 LINE CR1 1405 1574 -3 24 0 0 0 chr1 84298135 84298159 -158366194 + AT_rich Low_complexity Low_complexity 1 24 0 313 196 9 122 chr1 84298478 84298585 -158365768 + L2 LINE L2 3218 3312 -1 213 115 0 231 chr1 84300193 84300242 -158364111 - MIR SINE MIR -109 153 127 1872 169 3 0 chr1 84300242 84300537 -158363816 - AluJb SINE Alu -16 296 1 213 115 0 231 chr1 84300537 84300565 -158363788 - MIR SINE MIR -135 127 94 2077 124 3 0 chr1 84300634 84300924 -158363429 - AluSg SINE Alu -19 291 1 30 0 0 0 chr1 84301420 84301450 -158362903 + AT_rich Low_complexity Low_complexity 1 30 0 507 289 247 0 chr1 84301762 84301928 -158362425 - MIR SINE MIR -25 237 31 1950 116 7 27 chr1 84302299 84302592 -158361761 + AluSx SINE Alu 1 287 -25 614 248 95 16 chr1 84302669 84302903 -158361450 - MIR SINE MIR 0 262 9 1844 139 39 36 chr1 84303711 84304071 -158360282 + MER46B DNA MER2_type 1 236 0 2931 148 68 7 chr1 84305067 84305608 -158358745 - L1MB1 LINE L1 -4 6164 5591 715 135 0 130 chr1 84305810 84305995 -158358358 - L1MB1 LINE L1 -748 5586 5426 252 133 0 0 chr1 84306292 84306337 -158358016 - L1MB7 LINE L1 -21 6163 6119 1736 157 84 0 chr1 84306377 84306651 -158357702 - AluSx SINE Alu -15 297 1 2490 148 57 26 chr1 84307148 84307408 -158356945 - Tigger3(Golem) DNA MER2_type 0 3029 2778 2407 82 0 0 chr1 84307408 84307711 -158356642 + AluY SINE Alu 1 303 -8 2490 148 57 26 chr1 84307711 84307942 -158356411 - Tigger3(Golem) DNA MER2_type -251 2778 2523 3966 91 23 45 chr1 84307958 84308617 -158355736 - L1MA1 LINE L1 -7 6295 5652 * 9703 46 4 0 chr1 84308615 84310592 -158353761 - L1PA5 LINE L1 0 6154 4174 422 335 51 19 chr1 84310593 84310751 -158353602 + L1MA4A LINE L1 557 719 -6130 10914 185 37 8 chr1 84310788 84312248 -158352105 + L1MA4A LINE L1 682 2098 -4750 1907 173 16 0 chr1 84312248 84312555 -158351798 + AluJb SINE Alu 1 312 0 10914 185 37 8 chr1 84312555 84313864 -158350489 + L1MA4A LINE L1 2098 3532 -3316 5541 153 24 33 chr1 84313865 84314259 -158350094 + L1MA4A LINE L1 5168 5564 -1441 468 0 0 0 chr1 84314259 84314311 -158350042 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 1669 148 0 8 chr1 84314315 84314558 -158349795 - AluSx SINE Alu -33 279 39 5541 153 24 33 chr1 84314558 84316021 -158348332 + L1MA4A LINE L1 5567 7001 -4 4815 47 3 5 chr1 84316284 84316876 -158347477 + LTR10C LTR ERV1 1 591 0 661 175 0 45 chr1 84317868 84318022 -158346331 - MER6 DNA MER2_type 0 865 719 975 166 128 32 chr1 84318038 84318225 -158346128 - AluJo SINE Alu -95 217 13 3432 171 88 1 chr1 84318236 84318895 -158345458 - MER6 DNA MER2_type -147 718 3 21 36 0 0 chr1 84318978 84319006 -158345347 + AT_rich Low_complexity Low_complexity 1 28 0 396 0 0 0 chr1 84319273 84319317 -158345036 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 225 373 27 40 chr1 84319895 84320045 -158344308 + MIR3 SINE MIR 37 184 -24 404 288 184 25 chr1 84320046 84320309 -158344044 - L1MC4 LINE L1 -292 7750 7355 1960 123 0 63 chr1 84320309 84320448 -158343905 - AluSx SINE Alu 0 312 166 4982 77 5 9 chr1 84320448 84321111 -158343242 - PABL_A LTR ERV1 0 660 1 1960 123 0 63 chr1 84321111 84321303 -158343050 - AluSx SINE Alu -146 166 2 353 281 38 25 chr1 84321335 84321495 -158342858 - L1MC4 LINE L1 -549 7493 7332 383 287 56 62 chr1 84322410 84322605 -158341748 + MIR SINE MIR 2 195 -67 365 198 74 0 chr1 84323512 84323593 -158340760 - MLT1F1 LTR MaLR -418 149 63 268 325 45 4 chr1 84323647 84323870 -158340483 - MLT1F1-int LTR MaLR -996 375 5 1304 219 55 13 chr1 84323877 84324381 -158339972 - MLT1F1 LTR MaLR -3 564 5 198 0 0 0 chr1 84324440 84324462 -158339891 + (CA)n Simple_repeat Simple_repeat 1 22 0 285 333 8 25 chr1 84326243 84326363 -158337990 + L2 LINE L2 3188 3305 -8 2698 7 0 0 chr1 84326753 84327043 -158337310 - AluYa5 SINE Alu 0 311 22 345 258 94 108 chr1 84327301 84327370 -158336983 - MIR SINE MIR -22 240 172 1501 220 84 50 chr1 84327370 84327434 -158336919 - MLT2B1 LTR ERVL 0 520 460 273 119 0 0 chr1 84327434 84327476 -158336877 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1501 220 84 50 chr1 84327476 84327911 -158336442 - MLT2B1 LTR ERVL -60 460 4 345 258 94 108 chr1 84327911 84328017 -158336336 - MIR SINE MIR -90 172 66 7611 85 6 21 chr1 84328017 84329104 -158335249 + MER11C LTR ERVK 1 1071 0 345 258 94 108 chr1 84329104 84329140 -158335213 - MIR SINE MIR -196 66 31 209 233 17 0 chr1 84329247 84329307 -158335046 + (TTA)n Simple_repeat Simple_repeat 3 63 0 441 104 0 0 chr1 84329982 84330059 -158334294 + (TA)n Simple_repeat Simple_repeat 2 78 0 1641 110 9 0 chr1 84331355 84331573 -158332780 + AluSp SINE Alu 85 304 -9 411 272 125 0 chr1 84331578 84331714 -158332639 + MIR SINE MIR 44 196 -66 846 186 65 112 chr1 84331742 84331807 -158332546 - MLT1C LTR MaLR -2 465 399 2112 132 0 0 chr1 84331807 84332095 -158332258 + AluSx SINE Alu 2 289 -23 846 186 65 112 chr1 84332095 84332352 -158332001 - MLT1C LTR MaLR -68 399 158 253 310 51 13 chr1 84332704 84332892 -158331461 + HAL1b LINE L1 257 1532 -925 344 251 53 86 chr1 84333094 84333548 -158330805 + L1M4 LINE L1 3287 3725 -2421 1000 274 29 72 chr1 84333637 84334163 -158330190 - MLT1J LTR MaLR -3 508 6 703 266 60 50 chr1 84334337 84334736 -158329617 + L2 LINE L2 2303 2705 -609 22 35 0 0 chr1 84334739 84334768 -158329585 + AT_rich Low_complexity Low_complexity 1 29 0 239 113 129 16 chr1 84335051 84335113 -158329240 - MER67C LTR ERV1 -636 74 6 498 316 87 5 chr1 84336389 84336603 -158327750 - MIR SINE MIR -3 259 30 607 310 80 74 chr1 84336649 84337198 -158327155 - L2 LINE L2 0 3272 2706 1442 213 36 33 chr1 84337198 84337587 -158326766 - MLT1B LTR MaLR 0 390 1 607 310 80 74 chr1 84337587 84337712 -158326641 - L2 LINE L2 -566 2706 2583 2980 226 8 18 chr1 84338685 84339344 -158325009 - MER82 DNA MER2_type 0 653 2 226 321 12 25 chr1 84339733 84339814 -158324539 + MER5A DNA MER1_type 88 167 -22 2535 60 0 0 chr1 84339897 84340195 -158324158 - AluY SINE Alu -13 298 1 1007 252 32 58 chr1 84340479 84340891 -158323462 - MLT1I LTR MaLR -8 401 1 229 261 120 38 chr1 84341356 84341540 -158322813 - MLT1I LTR MaLR -210 199 1 533 279 84 26 chr1 84341571 84341797 -158322556 + MIR SINE MIR 20 258 -4 1899 158 0 0 chr1 84341973 84342258 -158322095 - AluSx SINE Alu -11 301 17 336 203 122 81 chr1 84343870 84343993 -158320360 + MER91B DNA MER1_type 1 128 -62 359 322 9 17 chr1 84344186 84344301 -158320052 - L2 LINE L2 0 3313 3200 192 259 233 9 chr1 84344398 84344514 -158319839 + MIR SINE MIR 47 188 -74 1070 264 56 30 chr1 84344965 84345393 -158318960 - LTR16A LTR ERVL 0 450 12 311 222 88 166 chr1 84346192 84346238 -158318115 + MER102a DNA MER1_type 6 54 -1363 2417 154 60 2 chr1 84346238 84346641 -158317712 - MSTB LTR MaLR 0 426 1 311 222 88 166 chr1 84346641 84346805 -158317548 + MER102a DNA MER1_type 54 181 -1236 2357 104 0 0 chr1 84346805 84347102 -158317251 - AluSx SINE Alu -15 297 1 311 222 88 166 chr1 84347102 84347233 -158317120 + MER102a DNA MER1_type 181 321 -9 2396 39 0 0 chr1 84347878 84348207 -158316146 - AluY SINE Alu 0 330 2 1308 170 25 72 chr1 84349432 84349760 -158314593 + MLT2B3 LTR ERVL 245 554 0 2112 302 23 15 chr1 84349768 84350520 -158313833 - L1M3b LINE L1 -5522 759 2 3088 217 26 31 chr1 84350823 84350985 -158313368 - L1PA13 LINE L1 -4158 2639 2478 2318 79 7 0 chr1 84350985 84351275 -158313078 + AluY SINE Alu 1 292 -19 3088 217 26 31 chr1 84351275 84352338 -158312015 - L1PA13 LINE L1 -4319 2478 1328 1459 323 9 32 chr1 84352367 84352925 -158311428 - L1PA13 LINE L1 -6063 724 180 215 122 0 24 chr1 84352934 84352975 -158311378 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 764 169 26 7 chr1 84352975 84353129 -158311224 - MER67C LTR ERV1 -67 643 487 264 354 20 0 chr1 84353234 84353381 -158310972 - L1ME LINE L1 -506 5656 5507 849 248 92 91 chr1 84353395 84354024 -158310329 - L1ME LINE L1 -764 5382 4753 270 106 0 0 chr1 84354235 84354282 -158310071 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2238 65 32 0 chr1 84354285 84354562 -158309791 - AluY SINE Alu -25 286 1 807 280 56 56 chr1 84354586 84354916 -158309437 - L1ME LINE L1 -1530 4616 4287 21 0 0 0 chr1 84354916 84354937 -158309416 + AT_rich Low_complexity Low_complexity 1 21 0 807 280 56 56 chr1 84354937 84355411 -158308942 - L1ME LINE L1 -1858 4288 3792 3741 172 58 25 chr1 84355474 84356234 -158308119 + MER6 DNA MER2_type 1 785 -80 415 179 0 0 chr1 84356307 84356385 -158307968 - MER6 DNA MER2_type -587 278 201 347 132 0 0 chr1 84356388 84356441 -158307912 - MER6 DNA MER2_type -157 4294967283 -65 262 334 105 36 chr1 84356528 84356949 -158307404 + L2 LINE L2 2188 2705 -609 956 230 75 9 chr1 84357299 84357525 -158306828 - MIR SINE MIR -12 250 10 700 210 39 22 chr1 84357558 84357739 -158306614 + MLT2E LTR ERVL 438 621 -7 216 0 0 0 chr1 84357818 84357842 -158306511 + (TTA)n Simple_repeat Simple_repeat 2 25 0 349 259 48 14 chr1 84359443 84359590 -158304763 - MER104 DNA Tc2 0 180 29 1871 197 13 0 chr1 84359850 84360230 -158304123 + MER58D DNA MER1_type 1 385 -1 25 0 0 0 chr1 84360414 84360439 -158303914 + AT_rich Low_complexity Low_complexity 1 25 0 922 201 6 6 chr1 84360774 84360938 -158303415 + FRAM SINE Alu 1 164 -12 292 269 0 10 chr1 84361439 84361543 -158302810 + GA-rich Low_complexity Low_complexity 2 104 0 396 0 0 0 chr1 84363300 84363344 -158301009 + (TG)n Simple_repeat Simple_repeat 1 44 0 308 250 75 8 chr1 84363344 84363464 -158300889 - MIR SINE MIR -13 249 122 384 314 48 0 chr1 84365273 84365378 -158298975 + L2 LINE L2 3145 3254 -18 229 214 0 0 chr1 84365625 84365667 -158298686 + L2 LINE L2 3271 3312 -1 288 200 0 80 chr1 84365936 84365952 -158298401 + L2 LINE L2 2002 2018 -1296 2147 176 62 5 chr1 84365952 84366355 -158297998 + MSTB LTR MaLR 1 426 0 288 200 0 80 chr1 84366355 84366413 -158297940 + L2 LINE L2 2018 2070 -1244 1117 231 28 7 chr1 84366413 84366699 -158297654 + L2 LINE L2 2196 2487 -827 268 310 39 0 chr1 84366700 84366829 -158297524 + MER94 DNA DNA 1 134 0 551 266 30 18 chr1 84366836 84367005 -158297348 + L2 LINE L2 2489 2659 -655 255 287 0 11 chr1 84367010 84367097 -158297256 - L1MCc LINE L1 -5529 894 809 1403 206 48 90 chr1 84367099 84367410 -158296943 - MSTD LTR MaLR 0 396 105 2387 71 7 10 chr1 84367410 84367718 -158296635 + AluY SINE Alu 2 308 -3 1403 206 48 90 chr1 84367718 84367819 -158296534 - MSTD LTR MaLR -291 105 1 6345 225 40 48 chr1 84367819 84368754 -158295599 - MSTD-int LTR MaLR 0 1735 819 2218 111 51 20 chr1 84368754 84369107 -158295246 + THE1B LTR MaLR 1 364 0 6345 225 40 48 chr1 84369107 84369919 -158294434 - MSTD-int LTR MaLR -916 819 2 682 215 0 15 chr1 84369944 84370079 -158294274 + AluJb SINE Alu 2 134 -178 1160 213 26 18 chr1 84370088 84370361 -158293992 - MSTD LTR MaLR -121 275 1 788 291 56 24 chr1 84370641 84371016 -158293337 - L1MCc LINE L1 -5925 498 112 306 386 21 0 chr1 84371607 84371752 -158292601 + MIR SINE MIR 65 212 -50 34 55 0 0 chr1 84371848 84371903 -158292450 + AT_rich Low_complexity Low_complexity 1 55 0 53 30 0 0 chr1 84372168 84372235 -158292118 + AT_rich Low_complexity Low_complexity 1 67 0 844 255 53 0 chr1 84372324 84372532 -158291821 - MIR SINE MIR -42 220 2 26 0 0 0 chr1 84373446 84373472 -158290881 + AT_rich Low_complexity Low_complexity 1 26 0 257 319 51 23 chr1 84375267 84375483 -158288870 + MLT1K LTR MaLR 360 581 -7 25 0 0 0 chr1 84376052 84376077 -158288276 + AT_rich Low_complexity Low_complexity 1 25 0 203 250 0 0 chr1 84376492 84376536 -158287817 + CT-rich Low_complexity Low_complexity 1 44 0 182 319 69 42 chr1 84376865 84376937 -158287416 + L2 LINE L2 3176 3249 -23 840 286 190 20 chr1 84377016 84377696 -158286657 - L2 LINE L2 -2 3311 2505 1393 161 123 33 chr1 84377792 84378159 -158286194 - Charlie1b DNA MER1_type -2 521 122 2056 153 45 3 chr1 84378160 84378538 -158285815 + MER57A LTR ERV1 3 396 -7 499 256 16 8 chr1 84378544 84378669 -158285684 - Charlie1b DNA MER1_type -397 126 1 1865 113 92 7 chr1 84378947 84379230 -158285123 + AluSg SINE Alu 1 307 -3 364 260 10 30 chr1 84380903 84381003 -158283350 - L2 LINE L2 -4 3309 3212 538 237 312 18 chr1 84381074 84381171 -158283182 + LTR50 LTR ERVL 20 87 -708 2026 129 63 17 chr1 84381171 84381519 -158282834 - THE1B LTR MaLR 0 364 1 538 237 312 18 chr1 84381519 84381754 -158282599 + LTR50 LTR ERVL 87 450 -345 241 289 41 0 chr1 84381849 84381946 -158282407 + LTR33A LTR ERVL 412 512 -11 4881 229 100 42 chr1 84381974 84383694 -158280659 + Charlie2b DNA MER1_type 687 2306 -556 1659 149 62 43 chr1 84383694 84384062 -158280291 + THE1C LTR MaLR 1 375 0 4881 229 100 42 chr1 84384062 84384160 -158280193 + Charlie2b DNA MER1_type 2306 2397 -465 2321 118 0 0 chr1 84384160 84384465 -158279888 + AluSg SINE Alu 2 306 -4 4881 229 100 42 chr1 84384465 84384626 -158279727 + Charlie2b DNA MER1_type 2397 2782 0 730 200 0 22 chr1 84384832 84384967 -158279386 + FLAM_C SINE Alu 2 133 0 1089 183 0 0 chr1 84385224 84385399 -158278954 - AluJb SINE Alu -2 310 136 327 344 85 62 chr1 84387474 84387864 -158276489 + L2 LINE L2 298 696 -2618 238 349 34 95 chr1 84388046 84388131 -158276222 + L2 LINE L2 2635 2724 -548 1728 144 0 23 chr1 84388131 84388395 -158275958 + AluSx SINE Alu 1 258 -54 238 349 34 95 chr1 84388395 84388786 -158275567 + L2 LINE L2 2724 3091 -181 578 307 37 14 chr1 84389007 84389222 -158275131 - MIR SINE MIR -29 233 14 222 294 137 0 chr1 84389966 84390068 -158274285 - L2 LINE L2 -8 3264 3149 1731 162 38 21 chr1 84390230 84390569 -158273784 - MER7A DNA MER2_type -3 343 1 233 57 29 0 chr1 84390573 84390608 -158273745 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 740 191 23 8 chr1 84390688 84390819 -158273534 + L2 LINE L2 3140 3272 0 2138 116 7 0 chr1 84392044 84392336 -158272017 + AluSx SINE Alu 1 294 -18 364 348 51 0 chr1 84393419 84393557 -158270796 + MIR3 SINE MIR 6 150 -58 347 340 41 31 chr1 84394215 84394409 -158269944 + L3 LINE CR1 331 526 -1051 5674 138 22 53 chr1 84394656 84395748 -158268605 + L1M3f LINE L1 2 1059 -4269 3297 146 12 7 chr1 84395756 84396319 -158268034 + L1MC1 LINE L1 5767 6332 -1 321 206 0 0 chr1 84396495 84396563 -158267790 + MER63 DNA MER1_type 2 69 -861 310 163 0 23 chr1 84396553 84396639 -158267714 + MER63 DNA MER1_type 816 899 -161 * 1443 182 9 18 chr1 84396715 84397044 -158267309 - L1MD3 LINE L1 -9 7986 7661 632 346 57 23 chr1 84397097 84397484 -158266869 + L3 LINE CR1 522 921 -656 870 329 140 25 chr1 84397846 84398317 -158266036 + L3 LINE CR1 909 1433 -144 267 335 116 37 chr1 84398978 84399142 -158265211 + MER5B DNA MER1_type 1 177 -1 203 200 14 57 chr1 84400726 84400796 -158263557 + GA-rich Low_complexity Low_complexity 4 70 0 1651 191 48 11 chr1 84401089 84401463 -158262890 + MLT1B LTR MaLR 1 386 -4 2985 97 11 5 chr1 84401870 84402304 -158262049 - L1PA10 LINE L1 0 6168 5732 714 281 5 21 chr1 84403062 84403254 -158261099 + MIR SINE MIR 29 217 -45 195 210 32 97 chr1 84403740 84403802 -158260551 - MER5A DNA MER1_type -25 164 107 257 267 58 117 chr1 84405931 84406137 -158258216 - MIR SINE MIR -51 211 18 304 272 46 51 chr1 84406209 84406404 -158257949 - MLT1K LTR MaLR 0 588 395 2150 94 20 7 chr1 84406998 84407295 -158257058 - AluSx SINE Alu -11 301 1 1385 213 56 43 chr1 84407491 84407957 -158256396 - MER61E LTR ERV1 -54 515 92 247 183 122 12 chr1 84407997 84408079 -158256274 - LTR19C LTR ERV1 -688 91 1 214 216 78 0 chr1 84408218 84408269 -158256084 - L2 LINE L2 -1 3271 3217 2135 107 3 31 chr1 84408385 84408702 -158255651 - AluSq SINE Alu -5 308 1 206 98 0 49 chr1 84408912 84408953 -158255400 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 196 183 17 33 chr1 84409087 84409147 -158255206 + A-rich Low_complexity Low_complexity 5 63 0 2248 121 7 0 chr1 84410392 84410690 -158253663 + AluSx SINE Alu 1 300 -12 1066 273 122 40 chr1 84411150 84411707 -158252646 + MLT1L LTR MaLR 11 613 -2 341 347 142 6 chr1 84412413 84412589 -158251764 + L1MC4a LINE L1 5731 5930 -1878 21 57 0 0 chr1 84412750 84412785 -158251568 + AT_rich Low_complexity Low_complexity 1 35 0 1327 240 104 25 chr1 84413186 84413552 -158250801 + MLT2B1 LTR ERVL 1 395 -125 241 260 31 0 chr1 84413573 84413700 -158250653 + (TA)n Simple_repeat Simple_repeat 1 131 0 306 279 69 78 chr1 84413718 84413922 -158250431 + L2 LINE L2 3076 3277 -36 360 252 55 16 chr1 84414496 84414623 -158249730 - MLT1L LTR MaLR -8 607 476 318 245 41 10 chr1 84414796 84414894 -158249459 - L1ME4a LINE L1 0 6121 6021 333 82 0 0 chr1 84415637 84415686 -158248667 + (TG)n Simple_repeat Simple_repeat 2 50 0 219 217 72 0 chr1 84416606 84416675 -158247678 + CT-rich Low_complexity Low_complexity 2 75 0 404 266 78 31 chr1 84416771 84416899 -158247454 - MIR SINE MIR -71 191 58 6840 59 39 5 chr1 84417230 84418745 -158245608 - L1PA7 LINE L1 -4 6150 4607 284 146 0 0 chr1 84418745 84418793 -158245560 + L1PA7 LINE L1 4564 4611 -1535 201 316 158 30 chr1 84418800 84418933 -158245420 - MIR SINE MIR -76 186 37 239 286 82 31 chr1 84419032 84419130 -158245223 - L2 LINE L2 -21 3292 3190 577 295 92 10 chr1 84419512 84419719 -158244634 - MIR SINE MIR -6 256 33 206 302 278 15 chr1 84420761 84420966 -158243387 + MIR SINE MIR 4 262 0 374 341 63 18 chr1 84421211 84421243 -158243110 - L1MEd LINE L1 -3599 2530 2501 1822 155 14 10 chr1 84421243 84421540 -158242813 - AluJo SINE Alu -12 300 3 374 341 63 18 chr1 84421540 84421730 -158242623 - L1MEd LINE L1 -3628 2501 2298 1010 229 69 27 chr1 84421739 84422071 -158242282 + L1ME1 LINE L1 5816 6161 -5 423 308 133 5 chr1 84422163 84422358 -158241995 - HAL1 LINE L1 -917 1590 1371 373 266 31 73 chr1 84422361 84422650 -158241703 - L1MEd LINE L1 -4862 1257 981 294 296 99 37 chr1 84422851 84423013 -158241340 - L1MEd LINE L1 -5393 726 555 814 260 82 27 chr1 84423018 84423511 -158240842 + MLT1G1 LTR MaLR 1 469 -86 711 191 9 0 chr1 84423911 84424055 -158240298 - FLAM_C SINE Alu 0 146 2 991 216 36 31 chr1 84424391 84424613 -158239740 + MER58A DNA MER1_type 2 224 0 252 0 0 0 chr1 84424651 84424679 -158239674 + (TA)n Simple_repeat Simple_repeat 2 29 0 4281 47 6 0 chr1 84424679 84425206 -158239147 - L1PA8 LINE L1 -10 6162 5633 4189 110 10 82 chr1 84425421 84426192 -158238161 + L1PB2 LINE L1 5435 6150 -1 1582 174 6 73 chr1 84427781 84428138 -158236215 + MER7A DNA MER2_type 2 332 -14 4099 134 40 46 chr1 84429338 84429695 -158234658 - MER4D LTR ERV1 0 866 509 2595 59 0 0 chr1 84429695 84430002 -158234351 - AluY SINE Alu -2 309 3 4099 134 40 46 chr1 84430002 84430218 -158234135 - MER4D LTR ERV1 -357 509 293 2081 122 17 0 chr1 84430218 84430513 -158233840 + AluSx SINE Alu 1 300 -12 4099 134 40 46 chr1 84430513 84430844 -158233509 - MER4D LTR ERV1 -573 293 1 196 290 0 29 chr1 84430845 84430914 -158233439 - MIR SINE MIR -79 183 117 761 223 121 92 chr1 84430915 84431396 -158232957 + L1MC4 LINE L1 7459 7953 -89 908 217 6 0 chr1 84431403 84431578 -158232775 + FRAM SINE Alu 1 171 -5 241 242 165 11 chr1 84431920 84432011 -158232342 + L2 LINE L2 3205 3309 -4 188 330 54 27 chr1 84432043 84432155 -158232198 - L2 LINE L2 -242 3030 2916 285 98 0 0 chr1 84433364 84433405 -158230948 + (GAA)n Simple_repeat Simple_repeat 1 41 0 441 0 0 0 chr1 84433556 84433605 -158230748 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 70 0 0 chr1 84433720 84433763 -158230590 + AT_rich Low_complexity Low_complexity 1 43 0 1165 249 50 63 chr1 84433923 84434385 -158229968 + LTR40b LTR ERVL 4 459 -3 808 165 0 15 chr1 84434581 84434714 -158229639 + FLAM_C SINE Alu 1 131 -2 1447 177 70 6 chr1 84436161 84436477 -158227876 + MER58B DNA MER1_type 1 336 -5 2288 121 0 0 chr1 84437388 84437693 -158226660 - AluSx SINE Alu -7 305 1 22 70 0 0 chr1 84437694 84437737 -158226616 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr1 84437943 84437966 -158226387 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 84438539 84438562 -158225791 + AT_rich Low_complexity Low_complexity 1 23 0 197 300 114 0 chr1 84439316 84439386 -158224967 + MIR SINE MIR 118 195 -67 268 208 191 79 chr1 84440045 84440223 -158224130 - MIR SINE MIR -3 259 62 692 152 72 0 chr1 84440319 84440444 -158223909 - LTR5 LTR ERVK -455 514 381 242 238 16 48 chr1 84441295 84441421 -158222932 + (CATATA)n Simple_repeat Simple_repeat 1 122 0 224 158 0 85 chr1 84441937 84442019 -158222334 + G-rich Low_complexity Low_complexity 1 75 0 574 315 28 6 chr1 84443733 84443914 -158220439 + MIR SINE MIR 28 212 -50 21 57 0 0 chr1 84444016 84444051 -158220302 + AT_rich Low_complexity Low_complexity 1 35 0 525 235 26 58 chr1 84444052 84444246 -158220107 - MIR SINE MIR -62 146 1 227 355 78 18 chr1 84444386 84444552 -158219801 + MIR SINE MIR 13 188 -74 1557 213 34 68 chr1 84444621 84445180 -158219173 - MER34 LTR ERV1 0 542 3 199 344 104 16 chr1 84445304 84445429 -158218924 - L2 LINE L2 -161 3111 2976 256 262 71 12 chr1 84445488 84445572 -158218781 - MIR SINE MIR -74 188 100 396 333 103 6 chr1 84445783 84445948 -158218405 + MIR SINE MIR 24 204 -58 2131 127 0 3 chr1 84446091 84446383 -158217970 - AluSx SINE Alu -21 291 1 284 206 112 0 chr1 84446519 84446626 -158217727 - L1ME LINE L1 -656 5465 5347 208 348 87 0 chr1 84447491 84447583 -158216770 + L2 LINE L2 3169 3268 -4 332 324 19 19 chr1 84448380 84448488 -158215865 - MIR SINE MIR -124 138 31 1343 60 102 46 chr1 84448488 84448704 -158215649 + MER30 DNA MER1_type 1 228 -2 384 163 216 72 chr1 84449023 84449176 -158215177 + MER69A DNA AcHobo 2 176 -1 1279 218 42 13 chr1 84450887 84451267 -158213086 - Charlie5 DNA MER1_type 0 2624 2234 591 167 8 17 chr1 84451268 84451388 -158212965 - Charlie5 DNA MER1_type -2489 123 5 298 291 112 30 chr1 84452137 84452271 -158212082 - MIR SINE MIR -1 261 117 1460 209 59 6 chr1 84452305 84452626 -158211727 + MER58B DNA MER1_type 4 341 0 292 204 159 11 chr1 84452774 84452862 -158211491 - MIR SINE MIR -74 134 34 659 297 24 0 chr1 84452888 84453053 -158211300 - MER5A DNA MER1_type -11 178 10 499 265 150 20 chr1 84454847 84455047 -158209306 - MIR SINE MIR 0 262 37 440 239 153 31 chr1 84455154 84455317 -158209036 - MIR SINE MIR -10 252 70 566 247 291 0 chr1 84455357 84455539 -158208814 - MIR SINE MIR -2 260 26 241 149 21 0 chr1 84455940 84455987 -158208366 + L2 LINE L2 2677 2724 -590 211 359 0 0 chr1 84456045 84456098 -158208255 + L2 LINE L2 3174 3226 -46 311 356 96 14 chr1 84456128 84456336 -158208017 - L2 LINE L2 -349 2965 2741 2344 92 0 3 chr1 84456337 84456510 -158207843 - AluY SINE Alu -17 294 121 207 0 0 0 chr1 84456510 84456533 -158207820 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2344 92 0 3 chr1 84456533 84456654 -158207699 - AluY SINE Alu -190 121 1 193 149 0 64 chr1 84457125 84457172 -158207181 - L2 LINE L2 -2 3311 3268 * 318 254 138 8 chr1 84457145 84457275 -158207078 - MIR SINE MIR -13 249 103 192 229 18 119 chr1 84457337 84457446 -158206907 - MIR SINE MIR -150 112 15 258 324 56 42 chr1 84457773 84457989 -158206364 + L2 LINE L2 2638 2856 -458 2061 157 17 29 chr1 84458855 84459206 -158205147 + MER7A DNA MER2_type 2 346 0 548 274 40 45 chr1 84459751 84459894 -158204459 - MIR SINE MIR -11 251 108 851 240 17 0 chr1 84459894 84460069 -158204284 + MER45A DNA AcHobo 1 178 0 548 274 40 45 chr1 84460069 84460148 -158204205 - MIR SINE MIR -154 108 30 1357 247 105 43 chr1 84460839 84461373 -158202980 + MER34B LTR ERV1 3 565 0 839 219 83 8 chr1 84461684 84461926 -158202427 - MIR SINE MIR -1 261 2 375 242 137 19 chr1 84462835 84462996 -158201357 + MIR SINE MIR 83 262 0 60 27 0 0 chr1 84463852 84463926 -158200427 + AT_rich Low_complexity Low_complexity 1 74 0 1331 247 24 26 chr1 84464159 84464222 -158200131 - L1ME3A LINE L1 -202 5951 5889 2393 97 0 0 chr1 84464222 84464522 -158199831 - AluSx SINE Alu -12 300 1 1331 247 24 26 chr1 84464522 84464547 -158199806 - L1ME3A LINE L1 -264 5889 5865 2818 98 3 5 chr1 84464547 84464923 -158199430 + THE1C LTR MaLR 1 375 0 1331 247 24 26 chr1 84464923 84465213 -158199140 - L1ME3A LINE L1 -288 5865 5573 1147 227 67 14 chr1 84465237 84465598 -158198755 - LTR37A LTR ERV1 -13 413 34 1106 283 61 32 chr1 84465653 84466641 -158197712 - L1ME1 LINE L1 -567 5578 4563 1379 213 115 34 chr1 84466647 84467103 -158197250 + L1ME1 LINE L1 5608 6136 -11 1354 281 85 21 chr1 84467116 84468135 -158196218 - L1ME3A LINE L1 -1549 4580 3481 3678 133 37 37 chr1 84468152 84468828 -158195525 - L1MC1 LINE L1 0 6333 5658 581 262 142 44 chr1 84468837 84469533 -158194820 - L1MEc LINE L1 -2956 3173 2547 318 26 0 0 chr1 84469533 84469572 -158194781 + (TG)n Simple_repeat Simple_repeat 1 39 0 581 262 142 44 chr1 84469572 84469971 -158194382 - L1MEc LINE L1 -3582 2547 1914 578 277 89 67 chr1 84470073 84470806 -158193547 - L1MEc LINE L1 -4586 1724 976 866 237 113 53 chr1 84470855 84471321 -158193032 - MLT1D LTR MaLR -2 465 1 324 332 50 35 chr1 84471391 84471650 -158192703 - L1MEc LINE L1 -5306 813 551 2203 117 79 15 chr1 84471999 84472341 -158192012 - THE1B LTR MaLR 0 364 1 252 195 103 11 chr1 84472421 84472508 -158191845 - L1MC5 LINE L1 -35 7926 7832 204 275 99 11 chr1 84472622 84472713 -158191640 + L2 LINE L2 3171 3269 -3 236 301 156 6 chr1 84472725 84472898 -158191455 - MIR3 SINE MIR -7 201 3 416 336 109 5 chr1 84473275 84473486 -158190867 + MIR SINE MIR 20 252 -10 25 0 0 0 chr1 84474615 84474640 -158189713 + AT_rich Low_complexity Low_complexity 1 25 0 399 299 36 15 chr1 84474645 84474813 -158189540 - MIR SINE MIR -62 146 2 342 0 0 0 chr1 84476179 84476217 -158188136 + (TG)n Simple_repeat Simple_repeat 2 39 0 307 252 151 0 chr1 84477819 84477938 -158186415 + MIR3 SINE MIR 58 194 -14 204 292 0 0 chr1 84478279 84478327 -158186026 + GA-rich Low_complexity Low_complexity 5 52 0 7174 53 6 34 chr1 84478771 84479736 -158184617 - SVA Other Other -16 1370 433 577 100 27 27 chr1 84479749 84480697 -158183656 - SVA Other Other -592 794 685 2175 87 7 58 chr1 84481149 84481459 -158182894 - AluSq SINE Alu -19 294 1 1911 112 3 35 chr1 84481977 84482264 -158182089 + AluSx SINE Alu 35 312 0 257 289 58 52 chr1 84483228 84483401 -158180952 - L2 LINE L2 -15 3298 3125 2091 133 10 3 chr1 84483965 84484274 -158180079 + AluSx SINE Alu 1 311 -1 578 318 69 8 chr1 84485081 84485289 -158179064 + MIR SINE MIR 2 229 -33 2175 71 0 3 chr1 84485289 84485572 -158178781 - L1PA8 LINE L1 -2 6170 5889 578 318 69 8 chr1 84485572 84485608 -158178745 + MIR SINE MIR 229 261 -1 195 286 214 16 chr1 84485774 84485900 -158178453 - MIR3 SINE MIR -55 153 3 2342 96 0 0 chr1 84486145 84486437 -158177916 - AluSg SINE Alu -18 292 1 284 325 148 16 chr1 84486699 84486942 -158177411 + L3 LINE CR1 1027 1301 -276 184 309 12 0 chr1 84487281 84487365 -158176988 + L2 LINE L2 3183 3267 -5 266 169 62 15 chr1 84487854 84487919 -158176434 - MIR SINE MIR -111 151 84 794 254 217 48 chr1 84487933 84488106 -158176247 + L2 LINE L2 2262 2405 -908 1893 170 143 37 chr1 84488106 84488560 -158175793 - MLT1D LTR MaLR -3 502 1 794 254 217 48 chr1 84488560 84488751 -158175602 + L2 LINE L2 2405 2562 -751 2387 91 0 0 chr1 84488751 84489047 -158175306 + AluY SINE Alu 1 296 -15 794 254 217 48 chr1 84489047 84489546 -158174807 + L2 LINE L2 2562 3296 -17 654 208 151 0 chr1 84490239 84490398 -158173955 + MER5A DNA MER1_type 1 183 -6 2393 81 0 23 chr1 84490406 84490713 -158173640 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr1 84491385 84491406 -158172947 + AT_rich Low_complexity Low_complexity 1 21 0 510 193 0 42 chr1 84491778 84491897 -158172456 - MSTB1 LTR MaLR 0 432 319 940 128 0 8 chr1 84491997 84492130 -158172223 - AluSq/x SINE Alu -180 132 1 1261 140 47 111 chr1 84492893 84493235 -158171118 + MER33 DNA MER1_type 1 320 -4 379 138 0 25 chr1 84494455 84494535 -158169818 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 185 343 120 23 chr1 84494707 84494882 -158169471 + MIR SINE MIR 21 212 -50 245 304 69 0 chr1 84495626 84495728 -158168625 - MIR SINE MIR -3 259 151 225 304 18 36 chr1 84496119 84496231 -158168122 - MER70B LTR ERVL -18 560 451 2408 296 26 15 chr1 84497053 84497849 -158166504 - MER70-int LTR ERVL -1504 3519 2715 2704 282 86 46 chr1 84498216 84500060 -158164293 - MER70-int LTR ERVL -2297 2726 794 419 281 0 0 chr1 84501182 84501296 -158163057 - MER70-int LTR ERVL -4454 569 456 273 324 46 0 chr1 84501793 84501901 -158162452 - MER70B LTR ERVL -23 555 443 245 228 132 66 chr1 84502306 84502442 -158161911 + L2 LINE L2 3165 3309 -4 318 289 10 19 chr1 84502448 84502552 -158161801 + MIR3 SINE MIR 93 195 -13 2362 86 7 0 chr1 84502943 84503235 -158161118 + AluSx SINE Alu 1 294 -18 459 274 73 36 chr1 84503468 84503687 -158160666 - MIR SINE MIR -16 246 20 186 43 0 0 chr1 84504638 84504661 -158159692 + (TG)n Simple_repeat Simple_repeat 1 23 0 420 302 70 28 chr1 84505000 84505215 -158159138 - MIR SINE MIR -33 229 6 2687 36 0 0 chr1 84506997 84507299 -158157054 + AluY SINE Alu 1 302 -9 295 271 6 6 chr1 84507341 84507511 -158156842 + (CATA)n Simple_repeat Simple_repeat 1 170 0 433 288 184 6 chr1 84507775 84507938 -158156415 + MIR3 SINE MIR 5 196 -12 341 296 99 28 chr1 84508630 84508698 -158155655 + L2 LINE L2 3121 3183 -89 1366 167 47 69 chr1 84508698 84509015 -158155338 - AluJo SINE Alu 0 312 3 341 296 99 28 chr1 84509015 84509088 -158155265 + L2 LINE L2 3183 3272 0 315 282 76 62 chr1 84510321 84510570 -158153783 - MLT1J LTR MaLR -21 465 237 339 96 0 0 chr1 84511473 84511525 -158152828 + (TG)n Simple_repeat Simple_repeat 2 53 0 510 309 65 9 chr1 84511949 84512166 -158152187 + MIR SINE MIR 22 250 -12 303 273 91 61 chr1 84512572 84512704 -158151649 - L2 LINE L2 -1 3271 3136 455 242 0 0 chr1 84513462 84513557 -158150796 + MER5A DNA MER1_type 9 103 -86 2217 113 3 0 chr1 84515146 84515446 -158148907 - AluSx SINE Alu -11 301 1 665 225 32 88 chr1 84515581 84515830 -158148523 + L2 LINE L2 3077 3311 -2 521 338 28 9 chr1 84516975 84517191 -158147162 + MIR SINE MIR 23 242 -20 765 131 54 8 chr1 84517549 84517679 -158146674 - L1MA9 LINE L1 -5 6307 6172 1368 139 4 75 chr1 84517684 84517950 -158146403 - L1MA9 LINE L1 -449 5863 5617 302 294 119 6 chr1 84518079 84518239 -158146114 + MIR3 SINE MIR 17 194 -14 1133 188 68 0 chr1 84519523 84519757 -158144596 - LTR16C LTR ERVL -2 489 240 252 277 69 15 chr1 84519747 84519877 -158144476 - LTR16C LTR ERVL -354 137 1 * 303 328 47 8 chr1 84519933 84520061 -158144292 - MIR3 SINE MIR -68 140 8 307 304 92 36 chr1 84521070 84521350 -158143003 - L1ME LINE L1 -473 5648 5355 21 0 0 0 chr1 84523100 84523121 -158141232 + AT_rich Low_complexity Low_complexity 1 21 0 8501 183 35 52 chr1 84523469 84523543 -158140810 - L1MC3 LINE L1 -8 7777 7703 2432 60 13 32 chr1 84523543 84523859 -158140494 - AluY SINE Alu -1 310 1 8501 183 35 52 chr1 84523859 84524818 -158139535 - L1MC3 LINE L1 -82 7703 6791 2474 52 0 0 chr1 84524818 84525107 -158139246 - AluY SINE Alu -22 289 1 8501 183 35 52 chr1 84525107 84526012 -158138341 - L1MC3 LINE L1 -994 6791 5871 268 327 35 9 chr1 84526242 84526355 -158137998 + MIR SINE MIR 14 129 -133 214 331 83 16 chr1 84526693 84526814 -158137539 + MIR SINE MIR 91 219 -43 289 287 85 0 chr1 84526963 84527057 -158137296 - MIR SINE MIR -115 147 46 2059 143 19 3 chr1 84527271 84527578 -158136775 - AluSx SINE Alu 0 312 1 348 381 32 13 chr1 84527670 84527825 -158136528 - L2 LINE L2 -3 3269 3112 635 308 15 5 chr1 84527870 84528068 -158136285 - MIR SINE MIR -13 249 50 228 350 22 67 chr1 84528099 84528322 -158136031 - L2 LINE L2 -187 3085 2873 254 320 61 46 chr1 84528371 84528568 -158135785 - L2 LINE L2 -557 2757 2558 402 336 29 7 chr1 84529320 84529460 -158134893 + L3 LINE CR1 1430 1572 -5 199 305 49 0 chr1 84529456 84529538 -158134815 - MIR SINE MIR -106 102 17 * 640 216 97 17 chr1 84530211 84530387 -158133966 + MIR SINE MIR 63 252 -10 478 299 57 24 chr1 84530498 84530709 -158133644 + MIR SINE MIR 3 220 -42 292 263 59 122 chr1 84530830 84531100 -158133253 - L2 LINE L2 -143 3129 2877 351 304 58 29 chr1 84531532 84531629 -158132724 + MIR SINE MIR 47 151 -111 817 198 6 33 chr1 84531629 84531811 -158132542 + MER104 DNA MER2_type 1 177 -3 351 304 58 29 chr1 84531811 84531851 -158132502 + MIR SINE MIR 151 188 -74 188 296 0 0 chr1 84532478 84532522 -158131831 + MIR SINE MIR 217 260 -2 20555 175 41 5 chr1 84533021 84533037 -158131316 - L1PA12 LINE L1 -39 6780 6766 876 68 0 17 chr1 84533037 84533155 -158131198 - L1PA13 LINE L1 -6 6157 6042 20555 175 41 5 chr1 84533155 84538323 -158126030 - L1PA12 LINE L1 -53 6766 1396 754 318 47 4 chr1 84538326 84538562 -158125791 - L1PA12 LINE L1 -5529 1258 1013 297 0 0 0 chr1 84539182 84539215 -158125138 + (TG)n Simple_repeat Simple_repeat 1 33 0 15641 114 24 13 chr1 84539516 84542542 -158121811 + L1PA8A LINE L1 3126 6126 -5 618 238 89 103 chr1 84542545 84542737 -158121616 - L1ME4a LINE L1 -106 6015 5822 2216 128 0 3 chr1 84542737 84543050 -158121303 - AluSx SINE Alu 0 312 1 618 238 89 103 chr1 84543050 84543488 -158120865 - L1ME4a LINE L1 -299 5822 5394 913 162 27 43 chr1 84544871 84545011 -158119342 + L1MB3 LINE L1 5995 6133 -50 907 211 0 29 chr1 84545011 84545182 -158119171 + FRAM SINE Alu 1 166 0 913 162 27 43 chr1 84545182 84545226 -158119127 + L1MB3 LINE L1 6133 6176 -7 281 288 114 23 chr1 84546564 84546696 -158117657 - MER5B DNA MER1_type -34 144 1 1173 272 80 73 chr1 84547333 84547757 -158116596 + L2 LINE L2 2372 2791 -522 254 57 29 0 chr1 84547757 84547792 -158116561 - U2 snRNA snRNA -152 36 1 1173 272 80 73 chr1 84547792 84548277 -158116076 + L2 LINE L2 2791 3313 0 198 308 128 26 chr1 84548288 84548405 -158115948 + MIR SINE MIR 48 176 -86 4884 172 26 12 chr1 84548489 84549304 -158115049 + LTR1B LTR ERV1 1 826 0 303 223 28 33 chr1 84551499 84551597 -158112756 + (TA)n Simple_repeat Simple_repeat 2 99 -111 2240 142 30 9 chr1 84551597 84551935 -158112418 - MER7A DNA MER2_type 0 346 4 303 223 28 33 chr1 84551935 84552046 -158112307 + (TA)n Simple_repeat Simple_repeat 99 210 0 1894 126 0 0 chr1 84552350 84552611 -158111742 + AluSx SINE Alu 1 261 -51 387 0 0 0 chr1 84552613 84552656 -158111697 + (CA)n Simple_repeat Simple_repeat 1 43 0 590 264 14 12 chr1 84553077 84553276 -158111077 - MIR SINE MIR -33 229 30 205 290 72 0 chr1 84553355 84553424 -158110929 - L2 LINE L2 -43 3229 3156 262 233 244 23 chr1 84553477 84553563 -158110790 + L2 LINE L2 3195 3299 -14 377 207 16 124 chr1 84553717 84553838 -158110515 - L2 LINE L2 -3 3269 3162 2059 150 31 3 chr1 84553849 84554176 -158110177 - MER2 DNA MER2_type -9 336 1 276 292 104 52 chr1 84554466 84554658 -158109695 - MIR SINE MIR -3 259 58 279 54 0 0 chr1 84555824 84555861 -158108492 + (CA)n Simple_repeat Simple_repeat 2 38 0 2378 83 0 0 chr1 84556173 84556462 -158107891 + AluSg SINE Alu 1 289 -21 1494 159 96 20 chr1 84556644 84557016 -158107337 - Tigger2 DNA MER2_type -1 2717 6 638 208 157 6 chr1 84559014 84559173 -158105180 + MER5A DNA MER1_type 7 189 0 1835 172 14 51 chr1 84559333 84559768 -158104585 + L1MA6 LINE L1 5877 6295 -5 453 159 80 9 chr1 84561393 84561506 -158102847 - L1MA8 LINE L1 -1 6290 6170 488 273 61 45 chr1 84561715 84561786 -158102567 - MIR SINE MIR -10 252 184 1187 238 74 23 chr1 84561786 84562139 -158102214 - MLT1A2 LTR MaLR 0 374 4 488 273 61 45 chr1 84562139 84562296 -158102057 - MIR SINE MIR -78 184 24 6566 164 28 29 chr1 84562425 84563847 -158100506 - Charlie1a DNA MER1_type -1 1454 34 383 224 192 0 chr1 84564134 84564259 -158100094 + MIR SINE MIR 113 261 -1 722 258 16 0 chr1 84564298 84564484 -158099869 - MER5A DNA MER1_type 0 189 1 317 200 9 113 chr1 84564506 84564568 -158099785 + Charlie1 DNA MER1_type 2650 2696 -65 2036 119 10 0 chr1 84564568 84564862 -158099491 - AluSq SINE Alu -16 297 1 317 200 9 113 chr1 84564862 84564914 -158099439 + Charlie1 DNA MER1_type 2696 2752 -9 722 258 16 0 chr1 84565393 84565579 -158098774 - MER5A DNA MER1_type 0 189 1 397 165 9 113 chr1 84565601 84565663 -158098690 + Charlie1 DNA MER1_type 2650 2696 -65 2327 82 10 0 chr1 84565663 84565957 -158098396 - AluSq SINE Alu -16 297 1 397 165 9 113 chr1 84565957 84566009 -158098344 + Charlie1 DNA MER1_type 2696 2752 -9 662 291 95 104 chr1 84566472 84566956 -158097397 - L2 LINE L2 -3 3269 2782 1090 166 8 85 chr1 84566956 84567191 -158097162 - MER20 DNA MER1_type -2 217 1 662 291 95 104 chr1 84567191 84567234 -158097119 - L2 LINE L2 -490 2782 2740 1686 172 30 24 chr1 84567234 84567530 -158096823 - AluJb SINE Alu -14 298 1 662 291 95 104 chr1 84567530 84568202 -158096151 - L2 LINE L2 -532 2740 2067 2600 101 5 14 chr1 84570340 84570707 -158093646 - THE1B LTR MaLR 0 364 1 366 80 0 0 chr1 84571448 84571498 -158092855 + (TG)n Simple_repeat Simple_repeat 2 51 0 400 250 5 143 chr1 84572330 84572526 -158091827 + MER5B DNA MER1_type 7 175 -3 250 294 33 22 chr1 84572569 84572661 -158091692 + MER5A DNA MER1_type 97 189 0 23 54 0 0 chr1 84572884 84572921 -158091432 + AT_rich Low_complexity Low_complexity 1 37 0 2876 166 20 28 chr1 84572956 84573560 -158090793 - L1MA4 LINE L1 -20 6280 5682 469 224 0 26 chr1 84574079 84574195 -158090158 + MIR SINE MIR 147 259 -3 233 319 88 18 chr1 84574241 84574354 -158089999 + L2 LINE L2 3150 3270 -2 211 331 66 52 chr1 84575193 84575329 -158089024 - L2 LINE L2 0 3313 3176 212 307 47 34 chr1 84575508 84575604 -158088749 + MIR SINE MIR 2 97 -133 1895 65 4 24 chr1 84575697 84575944 -158088409 + AluSc SINE Alu 49 290 -19 407 266 206 22 chr1 84576307 84576491 -158087862 - MIR SINE MIR -38 224 7 966 242 151 23 chr1 84576612 84576963 -158087390 - MSTD LTR MaLR 0 396 1 315 347 53 6 chr1 84577264 84577434 -158086919 + MER115 DNA AcHobo 132 309 -384 707 318 37 0 chr1 84578553 84578742 -158085611 + MER91A DNA MER1_type 1 196 0 998 137 0 0 chr1 84579269 84579422 -158084931 - L1PA8 LINE L1 0 6172 6020 1562 179 7 79 chr1 84579728 84579960 -158084393 - MLT1B LTR MaLR 0 390 143 1842 137 85 0 chr1 84579960 84580230 -158084123 - AluSx SINE Alu -19 293 1 1562 179 7 79 chr1 84580230 84580327 -158084026 - MLT1B LTR MaLR -247 143 95 7004 26 1 5 chr1 84580327 84581159 -158083194 + L1PA4 LINE L1 5327 6155 0 1562 179 7 79 chr1 84581159 84581248 -158083105 - MLT1B LTR MaLR -295 95 1 838 289 113 16 chr1 84582314 84582677 -158081676 + MLT1J2 LTR MaLR 39 436 -14 916 172 99 10 chr1 84583326 84583518 -158080835 - MER3 DNA MER1_type 0 209 1 260 309 57 24 chr1 84583675 84583798 -158080555 + L3 LINE CR1 243 369 -1208 249 277 148 10 chr1 84583810 84583911 -158080442 + L2 LINE L2 3193 3307 -6 397 279 52 37 chr1 84584053 84584189 -158080164 + MIR3 SINE MIR 8 145 -63 304 356 245 3 chr1 84584242 84584593 -158079760 + L3 LINE CR1 581 1016 -561 445 215 146 56 chr1 84584596 84584740 -158079613 - MER5B DNA MER1_type -21 157 1 299 275 152 34 chr1 84584857 84585126 -158079227 + L3 LINE CR1 1120 1420 -157 686 295 224 7 chr1 84585213 84585470 -158078883 + L2 LINE L2 2815 3015 -298 195 114 0 0 chr1 84585470 84585505 -158078848 + (CA)n Simple_repeat Simple_repeat 2 36 0 686 295 224 7 chr1 84585505 84585657 -158078696 + L2 LINE L2 3015 3313 0 4970 90 1 1 chr1 84586734 84587420 -158076933 - L1PB1 LINE L1 -5 6146 5461 277 254 0 17 chr1 84587955 84588014 -158076339 + MIR SINE MIR 18 75 -187 561 254 88 28 chr1 84588103 84588284 -158076069 - MIR SINE MIR -14 248 57 340 331 149 43 chr1 84589665 84589994 -158074359 - L2 LINE L2 -2 3270 2907 5327 133 15 34 chr1 84591357 84591763 -158072590 + L1PA15 LINE L1 4881 5293 -872 928 51 0 0 chr1 84591763 84591880 -158072473 + L1PA3 LINE L1 6036 6152 -3 5327 133 15 34 chr1 84591880 84592786 -158071567 + L1PA15 LINE L1 5293 6163 -2 336 366 176 6 chr1 84593275 84593611 -158070742 + L2 LINE L2 2877 3269 -3 2315 127 49 42 chr1 84595692 84596117 -158068236 - MSTA LTR MaLR 0 428 1 409 326 56 14 chr1 84596609 84596753 -158067600 + L2 LINE L2 3122 3271 -1 190 196 65 0 chr1 84596904 84596950 -158067403 - L3b LINE CR1 -115 1468 1420 2961 167 14 13 chr1 84598258 84598814 -158065539 + MER89 LTR ERV1 1 557 -2 255 180 131 0 chr1 84600030 84600091 -158064262 - MIR SINE MIR 0 262 194 443 261 72 66 chr1 84600097 84600358 -158063995 + MLT1H LTR MaLR 2 240 -309 29 0 0 0 chr1 84600512 84600541 -158063812 + AT_rich Low_complexity Low_complexity 1 29 0 3096 157 16 10 chr1 84600543 84601118 -158063235 - L1MB2 LINE L1 -5 6166 5589 301 313 170 0 chr1 84601178 84601325 -158063028 - MIR SINE MIR -70 192 21 310 191 170 88 chr1 84601603 84601750 -158062603 + MER91A DNA MER1_type 1 159 -37 349 372 78 0 chr1 84602134 84602325 -158062028 + MIR SINE MIR 55 260 -2 288 286 45 15 chr1 84602464 84602597 -158061756 + L3 LINE CR1 805 941 -636 455 81 14 14 chr1 84602948 84603022 -158061331 - L1PB4 LINE L1 -4 6152 6079 776 160 39 0 chr1 84603055 84603211 -158061142 + MER106B DNA MER1_type 898 1059 0 268 381 14 7 chr1 84603214 84603353 -158061000 - MIR SINE MIR -109 153 14 1916 167 0 3 chr1 84604435 84604740 -158059613 + AluJb SINE Alu 1 304 -8 249 208 0 0 chr1 84604835 84604883 -158059470 + MIR SINE MIR 116 163 -99 1273 179 64 69 chr1 84604883 84605174 -158059179 - MLT1C LTR MaLR 0 390 99 230 0 33 0 chr1 84605174 84605204 -158059149 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1640 115 123 12 chr1 84605206 84605459 -158058894 - AluSx SINE Alu -31 281 1 1273 179 64 69 chr1 84605459 84605586 -158058767 - MLT1C LTR MaLR -292 98 1 280 295 77 84 chr1 84605688 84605897 -158058456 - MIR3 SINE MIR -4 258 52 1576 149 8 0 chr1 84606385 84606620 -158057733 - AluSq SINE Alu -53 260 24 180 0 0 0 chr1 84608160 84608180 -158056173 + (T)n Simple_repeat Simple_repeat 1 20 0 2290 168 26 17 chr1 84608554 84608976 -158055377 - MSTB LTR MaLR 0 426 1 280 294 33 11 chr1 84609236 84609391 -158054962 + MIR SINE MIR 20 250 -12 622 223 92 58 chr1 84609606 84609898 -158054455 + MLT1J1 LTR MaLR 6 307 -139 1352 176 35 28 chr1 84610366 84610418 -158053935 + MER33 DNA MER1_type 1 51 -2534 2231 183 21 12 chr1 84610418 84610844 -158053509 - MSTB1 LTR MaLR -2 430 1 1352 176 35 28 chr1 84610844 84611109 -158053244 + MER33 DNA MER1_type 51 320 -4 266 280 168 0 chr1 84611211 84611318 -158053035 + MIR SINE MIR 138 262 0 20750 108 12 2 chr1 84611644 84615802 -158048551 - L1PA8 LINE L1 0 6487 2285 9962 134 18 16 chr1 84615800 84617476 -158046877 - L1PA8 LINE L1 -4773 1688 10 * 254 192 16 32 chr1 84617888 84618018 -158046335 + CT-rich Low_complexity Low_complexity 1 127 0 3103 190 55 40 chr1 84618289 84619414 -158044939 - L1MB7 LINE L1 0 6184 5045 199 318 56 93 chr1 84620655 84620869 -158043484 + L2 LINE L2 2858 3063 -209 1888 162 124 7 chr1 84623940 84624384 -158039969 - LTR54B LTR ERV1 0 498 3 315 0 0 0 chr1 84625226 84625261 -158039092 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 65 0 0 chr1 84625322 84625368 -158038985 + AT_rich Low_complexity Low_complexity 1 46 0 463 274 65 59 chr1 84626553 84626739 -158037614 - MER5A DNA MER1_type -1 188 2 379 251 313 26 chr1 84628532 84628727 -158035626 + MIR SINE MIR 11 261 -1 216 97 0 0 chr1 84629203 84629234 -158035119 + (TTC)n Simple_repeat Simple_repeat 3 33 0 904 243 45 0 chr1 84629635 84629882 -158034471 - MIR SINE MIR -2 260 3 713 213 89 13 chr1 84630139 84630192 -158034161 - L1MA8 LINE L1 -10 6281 6233 324 0 0 0 chr1 84630192 84630228 -158034125 + (CA)n Simple_repeat Simple_repeat 2 37 0 713 213 89 13 chr1 84630228 84630409 -158033944 - L1MA8 LINE L1 -58 6233 6029 267 269 0 0 chr1 84630497 84630564 -158033789 - L1MC/D LINE L1 -2021 5787 5721 418 380 21 5 chr1 84630715 84630902 -158033451 + MIR SINE MIR 51 240 -22 216 268 0 18 chr1 84631250 84631306 -158033047 - MIR SINE MIR -206 56 2 508 292 84 26 chr1 84631325 84631551 -158032802 - MIR SINE MIR -1 261 23 507 306 117 0 chr1 84632373 84632553 -158031800 + MIR SINE MIR 52 252 -10 315 191 88 0 chr1 84633306 84633374 -158030979 - MIR3 SINE MIR -25 183 110 422 312 176 0 chr1 84634853 84635023 -158029330 + MIR SINE MIR 56 255 -7 306 276 16 55 chr1 84635027 84635154 -158029199 - MER5A DNA MER1_type -2 187 66 248 352 11 0 chr1 84635355 84635443 -158028910 - L2 LINE L2 0 3272 3184 518 219 13 46 chr1 84638590 84638741 -158025612 - Charlie8 DNA MER1_type -2182 235 90 2396 104 0 0 chr1 84639442 84639750 -158024603 + AluSq SINE Alu 1 308 -5 509 290 22 89 chr1 84640591 84640905 -158023448 - L2 LINE L2 -1 3312 3020 791 232 130 5 chr1 84640909 84641116 -158023237 - L2 LINE L2 -588 2726 2494 202 205 103 0 chr1 84641125 84641164 -158023189 - MIR3 SINE MIR -23 185 143 2286 93 10 3 chr1 84641262 84641564 -158022789 + AluSc SINE Alu 1 304 -5 317 311 84 17 chr1 84641634 84641753 -158022600 - MIR3 SINE MIR -52 156 30 23 0 0 0 chr1 84642242 84642265 -158022088 + AT_rich Low_complexity Low_complexity 1 23 0 312 334 35 45 chr1 84642690 84643001 -158021352 + L1ME LINE L1 5337 5644 -477 230 310 60 0 chr1 84643194 84643310 -158021043 - L1ME4a LINE L1 -30 6091 5969 22 56 0 0 chr1 84643488 84643524 -158020829 + AT_rich Low_complexity Low_complexity 1 36 0 23 92 0 0 chr1 84645391 84645456 -158018897 + AT_rich Low_complexity Low_complexity 1 65 0 732 305 45 19 chr1 84645599 84646357 -158017996 - L1ME4a LINE L1 -211 5951 5173 293 256 98 0 chr1 84646527 84646609 -158017744 + L1M4 LINE L1 4757 4846 -1300 267 260 0 0 chr1 84646727 84646823 -158017530 + (TA)n Simple_repeat Simple_repeat 2 97 0 405 265 116 67 chr1 84646837 84647312 -158017041 - L1ME4a LINE L1 -1176 4970 4473 289 28 0 0 chr1 84647347 84647383 -158016970 - U2 snRNA snRNA -152 36 1 2536 38 0 3 chr1 84647413 84647704 -158016649 - AluY SINE Alu -1 310 21 495 289 24 42 chr1 84647922 84648088 -158016265 - MIR SINE MIR -70 192 30 389 315 17 22 chr1 84649174 84649352 -158015001 + CT-rich Low_complexity Low_complexity 1 177 0 428 317 116 10 chr1 84649907 84650106 -158014247 + MIR SINE MIR 32 251 -11 655 261 33 0 chr1 84650150 84650334 -158014019 - MIR SINE MIR -10 252 63 186 323 0 15 chr1 84651076 84651141 -158013212 - MIR SINE MIR -10 252 189 429 247 120 62 chr1 84651507 84651766 -158012587 - L1ME4a LINE L1 -155 5966 5693 2079 102 6 60 chr1 84651948 84652263 -158012090 + AluSx SINE Alu 1 298 -14 444 37 0 0 chr1 84654607 84654661 -158009692 + (TG)n Simple_repeat Simple_repeat 2 55 0 914 171 56 60 chr1 84654666 84654935 -158009418 - ORSL DNA AcHobo -7 268 1 348 272 32 13 chr1 84654982 84655140 -158009213 + (CAGAGA)n Simple_repeat Simple_repeat 4 164 0 222 118 0 0 chr1 84656609 84656643 -158007710 + (T)n Simple_repeat Simple_repeat 1 34 0 420 272 44 22 chr1 84657117 84657253 -158007100 - MIR SINE MIR -113 149 11 506 238 40 8 chr1 84658518 84658644 -158005709 + MIR SINE MIR 3 132 -130 313 330 57 42 chr1 84659534 84659746 -158004607 - L1ME3 LINE L1 -244 5918 5704 264 234 327 0 chr1 84659793 84659889 -158004464 - MIR SINE MIR -68 140 42 506 213 155 35 chr1 84662090 84662264 -158002089 - L3 LINE CR1 -195 1382 1188 213 325 113 33 chr1 84662267 84662541 -158001812 - L3 LINE CR1 -600 977 682 319 289 107 57 chr1 84662665 84662822 -158001531 - MIR3 SINE MIR -28 180 20 22 0 0 0 chr1 84663587 84663609 -158000744 + AT_rich Low_complexity Low_complexity 1 22 0 246 128 26 0 chr1 84664744 84664783 -157999570 - MIR SINE MIR 0 262 223 1987 166 123 27 chr1 84664795 84665283 -157999070 - MER34 LTR ERV1 0 542 8 371 389 40 0 chr1 84665885 84666011 -157998342 - L2 LINE L2 -8 3264 3134 21 0 0 0 chr1 84666015 84666036 -157998317 + AT_rich Low_complexity Low_complexity 1 21 0 199 269 128 0 chr1 84666341 84666419 -157997934 - MIR SINE MIR -87 175 88 480 339 51 0 chr1 84666804 84666999 -157997354 + MIR SINE MIR 46 250 -12 243 413 14 7 chr1 84667244 84667400 -157996953 - L2 LINE L2 -353 2919 2765 297 229 16 16 chr1 84668612 84668673 -157995680 - L2 LINE L2 -62 3210 3150 318 159 16 16 chr1 84669707 84669770 -157994583 - MIR SINE MIR -125 137 75 405 207 91 8 chr1 84669868 84669989 -157994364 + MER117 DNA MER1_type 59 189 -8 330 323 6 70 chr1 84670058 84670216 -157994137 - L2 LINE L2 -188 3084 2937 382 262 213 22 chr1 84670254 84670437 -157993916 - MIR SINE MIR -15 247 30 274 282 113 8 chr1 84670476 84670600 -157993753 - L2 LINE L2 -925 2389 2253 348 317 17 17 chr1 84671445 84671625 -157992728 - L1MEd LINE L1 -5492 627 448 530 243 14 14 chr1 84671827 84671967 -157992386 - MIR SINE MIR 0 262 123 3527 109 76 56 chr1 84672008 84672630 -157991723 - MER51A LTR ERV1 0 634 1 196 311 33 0 chr1 84673336 84673397 -157990956 - L2 LINE L2 -1 3271 3209 182 232 0 18 chr1 84673472 84673528 -157990825 + CT-rich Low_complexity Low_complexity 2 56 0 192 386 85 0 chr1 84674543 84674732 -157989621 - L2 LINE L2 -459 2855 2651 458 289 20 27 chr1 84674938 84675087 -157989266 - MIR SINE MIR -94 168 21 185 346 0 0 chr1 84677434 84677512 -157986841 - MIR SINE MIR -2 260 183 405 278 67 90 chr1 84678146 84678491 -157985862 + L2 LINE L2 2931 3267 -5 9753 114 6 0 chr1 84679727 84681985 -157982368 - L1PA8 LINE L1 0 6172 3909 431 322 61 43 chr1 84682307 84682537 -157981816 + L1MEd LINE L1 580 813 -5306 741 242 113 45 chr1 84682607 84683073 -157981280 + MLT1C LTR MaLR 1 465 -2 382 287 70 54 chr1 84683122 84683860 -157980493 + L1MEd LINE L1 976 1555 -4574 2949 169 14 13 chr1 84684200 84684756 -157979597 - MER89 LTR ERV1 -2 557 1 642 145 24 0 chr1 84685152 84685284 -157979069 - L1M2 LINE L1 -511 5667 5606 300 294 119 6 chr1 84685402 84685562 -157978791 + MIR3 SINE MIR 17 194 -14 195 379 15 23 chr1 84687653 84687785 -157976568 + L2 LINE L2 2550 2680 -634 5806 70 0 8 chr1 84687827 84688617 -157975736 - L1PA7 LINE L1 0 6154 5371 3889 83 8 22 chr1 84688622 84689224 -157975129 + L1PA7 LINE L1 4782 5375 -771 186 225 0 0 chr1 84689419 84689459 -157974894 + L2 LINE L2 2944 2983 -330 225 94 0 0 chr1 84689737 84689769 -157974584 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 315 327 105 33 chr1 84689778 84689931 -157974422 - L2 LINE L2 -14 3258 3095 441 286 29 82 chr1 84692238 84692444 -157971909 + MIR SINE MIR 8 202 -60 885 272 28 79 chr1 84692603 84693110 -157971243 + L1ME3A LINE L1 5374 5854 -316 341 340 105 0 chr1 84693249 84693411 -157970942 + L1ME3A LINE L1 5974 6152 -18 25 0 0 0 chr1 84695417 84695442 -157968911 + AT_rich Low_complexity Low_complexity 1 25 0 196 114 68 0 chr1 84697419 84697463 -157966890 + (CATG)n Simple_repeat Simple_repeat 2 48 0 207 0 0 0 chr1 84697582 84697605 -157966748 + (CA)n Simple_repeat Simple_repeat 2 24 0 329 281 104 91 chr1 84697750 84698135 -157966218 + MLT1K LTR MaLR 199 588 0 219 167 167 50 chr1 84698929 84698989 -157965364 - L2 LINE L2 -14 3299 3233 1186 133 11 0 chr1 84699458 84699638 -157964715 - AluSg/x SINE Alu -9 303 122 275 289 23 55 chr1 84699667 84699795 -157964558 + MER46C DNA MER2_type 215 338 0 227 274 151 0 chr1 84700182 84700255 -157964098 - L2 LINE L2 -18 3254 3171 344 257 136 29 chr1 84700346 84700486 -157963867 + L1ME4a LINE L1 5961 6115 -6 1903 142 10 3 chr1 84700486 84700774 -157963579 - AluSg SINE Alu -18 292 3 2873 171 66 2 chr1 84700903 84701512 -157962841 + L1MC3 LINE L1 7132 7779 -6 635 14 0 0 chr1 84701561 84701634 -157962719 - L1PA5 LINE L1 -8 6146 6074 523 32 0 0 chr1 84701634 84701697 -157962656 + L1PA5 LINE L1 5903 5965 -189 417 171 0 0 chr1 84701719 84701789 -157962564 - L2 LINE L2 -862 2452 2383 221 98 24 0 chr1 84702346 84702387 -157961966 + (TTA)n Simple_repeat Simple_repeat 2 43 0 336 235 61 31 chr1 84702644 84702742 -157961611 - MLT1H LTR MaLR -16 533 433 337 273 128 47 chr1 84703700 84703839 -157960514 - L1M4 LINE L1 -2203 3943 3817 1686 185 84 33 chr1 84703839 84703880 -157960473 - MLT2D LTR ERVL 0 414 377 459 92 0 0 chr1 84703880 84703945 -157960408 + (TG)n Simple_repeat Simple_repeat 2 66 0 1686 185 84 33 chr1 84703945 84704225 -157960128 - MLT2D LTR ERVL -37 377 67 2031 140 0 0 chr1 84704225 84704511 -157959842 - AluSx SINE Alu -26 286 1 1686 185 84 33 chr1 84704511 84704582 -157959771 - MLT2D LTR ERVL -347 67 1 337 273 128 47 chr1 84704582 84704614 -157959739 - L1M4 LINE L1 -2329 3817 3758 382 315 68 6 chr1 84704617 84704779 -157959574 - MIR SINE MIR -76 186 15 21 0 0 0 chr1 84705552 84705573 -157958780 + AT_rich Low_complexity Low_complexity 1 21 0 2085 139 20 0 chr1 84706397 84706724 -157957629 - AluSx SINE Alu 0 312 1 2198 101 7 17 chr1 84706779 84707075 -157957278 - AluSg SINE Alu -17 293 1 553 209 9 152 chr1 84707174 84707384 -157956969 - MIR SINE MIR -5 257 78 22 70 0 0 chr1 84709728 84709771 -157954582 + AT_rich Low_complexity Low_complexity 1 43 0 597 318 102 4 chr1 84709884 84710120 -157954233 + L3 LINE CR1 1318 1576 -1 704 293 91 9 chr1 84710414 84710646 -157953707 - MIR SINE MIR -10 252 2 567 294 0 0 chr1 84711367 84711493 -157952860 - MER5A DNA MER1_type -1 188 63 3947 166 51 7 chr1 84711564 84712052 -157952301 - MER6 DNA MER2_type -129 736 206 291 28 0 0 chr1 84712052 84712088 -157952265 + (CA)n Simple_repeat Simple_repeat 2 37 0 3947 166 51 7 chr1 84712088 84712304 -157952049 - MER6 DNA MER2_type -659 206 1 237 283 0 0 chr1 84712359 84712412 -157951941 + L2 LINE L2 3220 3272 0 399 335 2 20 chr1 84713151 84713343 -157951010 - MIR SINE MIR -62 146 5 233 276 112 0 chr1 84714196 84714294 -157950059 + MER5A DNA MER1_type 4 112 -77 706 212 35 71 chr1 84715164 84715390 -157948963 + MER20 DNA MER1_type 1 218 -1 1576 228 140 5 chr1 84715746 84716190 -157948163 + MLT1D LTR MaLR 2 505 0 990 296 111 18 chr1 84716278 84716674 -157947679 - L2 LINE L2 -1 3312 2880 206 244 0 0 chr1 84716675 84716716 -157947637 + MIR SINE MIR 145 185 -77 4607 160 45 15 chr1 84717670 84718227 -157946126 - L1PA16 LINE L1 -10 6156 5617 957 18 0 0 chr1 84718227 84718338 -157946015 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 6900 56 34 5 chr1 84718340 84719282 -157945071 - L1PA7 LINE L1 -13 6141 5194 4607 160 45 15 chr1 84719282 84719821 -157944532 - L1PA16 LINE L1 -549 5617 5024 295 320 122 48 chr1 84720538 84720850 -157943503 - L2 LINE L2 0 3313 2979 620 263 18 44 chr1 84720999 84721227 -157943126 + L2 LINE L2 3075 3296 -17 183 123 0 70 chr1 84722009 84722066 -157942287 + (GAGAA)n Simple_repeat Simple_repeat 4 56 0 846 281 58 40 chr1 84722258 84722818 -157941535 + L2 LINE L2 2692 3258 -55 363 352 25 6 chr1 84722819 84722981 -157941372 - MIR SINE MIR -91 171 7 639 271 29 45 chr1 84723246 84723490 -157940863 + MIR SINE MIR 9 248 -14 23 33 0 0 chr1 84723493 84723523 -157940830 + AT_rich Low_complexity Low_complexity 1 30 0 411 274 30 45 chr1 84723595 84723796 -157940557 + LTR37B LTR ERV1 1 198 -270 600 223 54 40 chr1 84723865 84723960 -157940393 + LTR37B LTR ERV1 207 299 -169 180 111 0 0 chr1 84723960 84723987 -157940366 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 600 223 54 40 chr1 84723987 84724115 -157940238 + LTR37B LTR ERV1 299 433 -35 796 247 109 29 chr1 84724311 84724550 -157939803 + MIR SINE MIR 4 261 -1 216 146 83 21 chr1 84725404 84725452 -157938901 - L2 LINE L2 0 3313 3263 219 303 0 0 chr1 84725490 84725556 -157938797 + MIR SINE MIR 182 247 -15 253 230 105 79 chr1 84725589 84725741 -157938612 - HAL1 LINE L1 -6 2501 2346 353 226 24 33 chr1 84726275 84726405 -157937948 - HAL1b LINE L1 -184 2323 799 721 183 0 29 chr1 84726809 84726946 -157937407 - FLAM_A SINE Alu 0 133 1 292 297 82 34 chr1 84727699 84728079 -157936274 - L1M4 LINE L1 -2387 3759 3362 21 36 0 0 chr1 84728259 84728287 -157936066 + AT_rich Low_complexity Low_complexity 1 28 0 495 261 31 0 chr1 84728303 84728433 -157935920 - MER94 DNA DNA 0 134 1 707 176 11 59 chr1 84728557 84728744 -157935609 + MER106A DNA MER1_type 54 231 -5 208 200 22 0 chr1 84729019 84729064 -157935289 + MIR SINE MIR 180 225 -37 1402 304 132 24 chr1 84729065 84730056 -157934297 + L2 LINE L2 2034 3133 -180 228 143 0 0 chr1 84730746 84730788 -157933565 + (CTG)n Simple_repeat Simple_repeat 2 43 0 221 283 33 128 chr1 84730902 84731082 -157933271 + L2 LINE L2 3083 3245 -27 299 215 127 0 chr1 84731916 84731995 -157932358 - L1ME4a LINE L1 -69 6052 5964 310 256 58 112 chr1 84732971 84733194 -157931159 - L2 LINE L2 -4 3309 3099 2070 120 0 20 chr1 84733846 84734146 -157930207 + AluSq SINE Alu 1 294 -19 2116 93 3 3 chr1 84734372 84734662 -157929691 - AluY SINE Alu -21 290 1 1535 262 42 5 chr1 84735612 84736159 -157928194 + L1ME3A LINE L1 5319 5890 -280 249 33 0 0 chr1 84736635 84736665 -157927688 + (A)n Simple_repeat Simple_repeat 1 30 0 311 290 126 100 chr1 84736985 84737485 -157926868 + L1ME LINE L1 152 664 -5541 248 128 43 0 chr1 84737771 84737818 -157926535 + L1ME LINE L1 687 735 -4962 328 356 27 0 chr1 84737897 84738043 -157926310 + L1ME LINE L1 1027 1176 -5029 180 172 0 0 chr1 84738057 84738086 -157926267 + MER5A DNA MER1_type 3 31 -158 862 286 37 65 chr1 84738244 84738719 -157925634 + L1ME LINE L1 1228 1715 -4681 180 77 0 0 chr1 84738719 84738745 -157925608 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1514 193 18 28 chr1 84738755 84739040 -157925313 - AluJo SINE Alu -30 282 1 862 286 37 65 chr1 84739040 84739150 -157925203 + L1ME LINE L1 1724 1807 -4589 1577 302 43 8 chr1 84739436 84740212 -157924141 + L1ME LINE L1 2156 2914 -3301 751 241 150 41 chr1 84740207 84740547 -157923806 + L1ME3 LINE L1 5602 5978 -184 * 821 248 122 4 chr1 84741048 84741278 -157923075 + MIR SINE MIR 3 259 -3 180 200 0 0 chr1 84741814 84741859 -157922494 + (AATTG)n Simple_repeat Simple_repeat 3 47 0 467 272 139 13 chr1 84741920 84742078 -157922275 + MIR SINE MIR 72 249 -13 254 301 33 48 chr1 84742207 84742351 -157922002 - MIR SINE MIR -74 188 49 550 208 35 28 chr1 84742890 84743034 -157921319 + L2 LINE L2 3169 3313 0 30 59 0 0 chr1 84743301 84743352 -157921001 + AT_rich Low_complexity Low_complexity 1 51 0 429 20 0 0 chr1 84744079 84744129 -157920224 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 232 107 0 71 chr1 84744130 84744186 -157920167 + (TTCCC)n Simple_repeat Simple_repeat 5 56 0 1142 165 33 24 chr1 84744551 84744763 -157919590 - MER20 DNA MER1_type -4 215 2 215 368 44 22 chr1 84746693 84746829 -157917524 - MIR3 SINE MIR -69 139 1 1076 186 45 21 chr1 84747702 84747879 -157916474 + LTR54B LTR ERV1 9 180 -318 4346 126 44 4 chr1 84747879 84748135 -157916218 + L1MA4A LINE L1 5522 5766 -537 330 67 0 0 chr1 84748135 84748180 -157916173 + (CA)n Simple_repeat Simple_repeat 2 46 0 4346 126 44 4 chr1 84748180 84748669 -157915684 + L1MA4A LINE L1 5766 6297 -6 1076 186 45 21 chr1 84748669 84748739 -157915614 + LTR54B LTR ERV1 180 247 -251 1947 162 0 0 chr1 84748739 84749041 -157915312 + AluJb SINE Alu 1 302 -10 1076 186 45 21 chr1 84749041 84749234 -157915119 + LTR54B LTR ERV1 247 494 -4 24 32 0 0 chr1 84749712 84749743 -157914610 + AT_rich Low_complexity Low_complexity 1 31 0 2168 108 7 16 chr1 84749926 84750232 -157914121 - AluSq SINE Alu -10 303 1 228 35 0 0 chr1 84750341 84750370 -157913983 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 292 289 58 48 chr1 84750434 84750642 -157913711 - L1M4 LINE L1 -1871 4275 4066 341 258 45 23 chr1 84750755 84750887 -157913466 + MER103 DNA DNA 31 165 -1 1287 267 87 48 chr1 84751419 84752254 -157912099 - L1M4 LINE L1 -1440 4706 3839 721 139 8 16 chr1 84752303 84752425 -157911928 + Charlie1 DNA MER1_type 1781 1901 -860 2231 109 0 26 chr1 84752503 84752815 -157911538 + AluSq SINE Alu 2 305 -8 563 278 124 53 chr1 84752945 84753567 -157910786 - L1MEd LINE L1 -4862 1257 592 514 238 35 23 chr1 84755394 84755566 -157908787 - MER5B DNA MER1_type -1 177 4 311 44 22 0 chr1 84757488 84757533 -157906820 + (TG)n Simple_repeat Simple_repeat 1 46 0 225 108 0 0 chr1 84757661 84757698 -157906655 + (TC)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 84757967 84757990 -157906363 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 84758540 84758568 -157905785 + AT_rich Low_complexity Low_complexity 1 28 0 194 352 47 31 chr1 84758744 84758872 -157905481 + MIR SINE MIR 116 245 -17 195 189 0 0 chr1 84759180 84759217 -157905136 + L2 LINE L2 3261 3297 -16 192 167 0 83 chr1 84759217 84759228 -157905125 + MIR SINE MIR 216 259 -3 1803 136 0 18 chr1 84760201 84760473 -157903880 - AluSx SINE Alu -15 297 31 269 248 120 32 chr1 84760887 84761012 -157903341 + L3 LINE CR1 1104 1239 -338 769 346 140 21 chr1 84761174 84762020 -157902333 + L2 LINE L2 2071 3061 -252 357 319 71 16 chr1 84762106 84762288 -157902065 - L2 LINE L2 -429 2885 2694 1749 186 91 71 chr1 84762291 84762742 -157901611 + MLT1C LTR MaLR 8 467 0 258 293 104 9 chr1 84762744 84762850 -157901503 - L2 LINE L2 -615 2699 2584 412 270 27 0 chr1 84762947 84763058 -157901295 + L2 LINE L2 2202 2315 -999 274 264 57 71 chr1 84763177 84763317 -157901036 + L3 LINE CR1 1340 1477 -100 2200 176 20 17 chr1 84764122 84764581 -157899772 - L1MB2 LINE L1 0 6171 5712 2356 155 20 46 chr1 84764716 84764760 -157899593 - MSTA LTR MaLR 0 428 384 2211 124 3 0 chr1 84764760 84765067 -157899286 + AluSx SINE Alu 3 310 -2 2356 155 20 46 chr1 84765067 84765461 -157898892 - MSTA LTR MaLR -44 384 1 4303 142 9 10 chr1 84765461 84766150 -157898203 - MSTA-int LTR MaLR 0 1580 893 3057 178 13 2 chr1 84766125 84766671 -157897682 - MSTA-int LTR MaLR -1098 553 2 * 2544 156 17 5 chr1 84766672 84767090 -157897263 - MSTA LTR MaLR 0 428 6 2050 112 0 14 chr1 84767332 84767644 -157896709 + AluSx SINE Alu 1 308 0 4371 147 32 1 chr1 84767681 84768423 -157895930 + L1PB4 LINE L1 5263 6027 -129 828 223 63 48 chr1 84768746 84768952 -157895401 - MER58A DNA MER1_type -15 209 1 516 385 62 19 chr1 84768979 84769304 -157895049 + L2 LINE L2 2927 3265 -7 763 236 78 33 chr1 84770007 84770249 -157894104 - MIR SINE MIR -2 260 8 399 202 0 0 chr1 84771439 84771528 -157892825 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 500 256 52 52 chr1 84771547 84771758 -157892595 + L2 LINE L2 3086 3296 -17 182 409 55 27 chr1 84771777 84771887 -157892466 - L2 LINE L2 -9 3263 3151 320 92 15 0 chr1 84772925 84772990 -157891363 - L1MA7 LINE L1 0 6291 6226 189 147 0 0 chr1 84772990 84773024 -157891329 + (CA)n Simple_repeat Simple_repeat 1 34 0 33 25 0 0 chr1 84773246 84773286 -157891067 + AT_rich Low_complexity Low_complexity 1 40 0 34 0 0 0 chr1 84773566 84773600 -157890753 + AT_rich Low_complexity Low_complexity 1 34 0 906 142 0 0 chr1 84773600 84773734 -157890619 - AluJo SINE Alu -178 134 1 437 268 82 36 chr1 84773823 84774043 -157890310 + MIR SINE MIR 7 236 -26 180 283 167 0 chr1 84775242 84775302 -157889051 - L2 LINE L2 0 3272 3203 299 248 98 102 chr1 84776307 84776553 -157887800 + L1MC4a LINE L1 5686 5930 -1878 2775 166 27 16 chr1 84776762 84777275 -157887078 - L1MD2 LINE L1 -12 6347 5829 1280 174 25 35 chr1 84777275 84777591 -157886762 - L1MDa LINE L1 -3907 2633 2321 22 0 0 0 chr1 84777657 84777679 -157886674 + AT_rich Low_complexity Low_complexity 1 22 0 1579 176 201 6 chr1 84777925 84778099 -157886254 - MSTA LTR MaLR -6 422 283 189 0 0 0 chr1 84778099 84778120 -157886233 + (GA)n Simple_repeat Simple_repeat 2 22 0 1579 176 201 6 chr1 84778120 84778298 -157886055 - MSTA LTR MaLR -145 283 1 411 301 98 7 chr1 84778328 84778481 -157885872 + MIR SINE MIR 67 233 -29 191 256 174 12 chr1 84779499 84779585 -157884768 + MIR SINE MIR 80 179 -83 550 110 55 0 chr1 84779623 84779714 -157884639 - AluSg/x SINE Alu 0 312 217 283 309 27 72 chr1 84779727 84779950 -157884403 - L2 LINE L2 -183 3089 2877 361 231 152 74 chr1 84781578 84781941 -157882412 + L1ME4a LINE L1 5689 6079 -42 1017 266 93 57 chr1 84781990 84782747 -157881606 + L2 LINE L2 2509 3292 -21 203 337 148 0 chr1 84782885 84782986 -157881367 - L2 LINE L2 -23 3249 3134 2944 231 81 55 chr1 84786661 84788104 -157876249 - L1MC5 LINE L1 -47 7914 6442 333 0 0 0 chr1 84788108 84788145 -157876208 + (CA)n Simple_repeat Simple_repeat 2 38 0 2319 109 0 0 chr1 84788692 84788995 -157875358 - AluSg SINE Alu -7 303 1 225 94 0 0 chr1 84789276 84789308 -157875045 + (T)n Simple_repeat Simple_repeat 1 32 0 202 289 0 0 chr1 84841271 84841323 -157823030 - MIR SINE MIR -155 107 56 426 227 229 32 chr1 84841514 84841777 -157822576 + L1MC/D LINE L1 5265 5590 -531 259 307 98 28 chr1 84842278 84842493 -157821860 + L1MC/D LINE L1 5637 5866 -1942 192 77 0 0 chr1 84843921 84843947 -157820406 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 257 141 62 31 chr1 84844294 84844358 -157819995 - MLT1J LTR MaLR -48 463 398 427 239 30 60 chr1 84844440 84844641 -157819712 - MLT1L LTR MaLR -220 395 201 238 315 11 11 chr1 84844686 84844775 -157819578 - MLT1L LTR MaLR -526 89 1 365 204 56 56 chr1 84844780 84844826 -157819527 - MIR SINE MIR -76 186 141 1659 176 34 96 chr1 84844826 84845242 -157819111 - MLT1B LTR MaLR 0 390 1 365 204 56 56 chr1 84845242 84845303 -157819050 - MIR SINE MIR -120 142 79 343 347 46 59 chr1 84846267 84846506 -157817847 + L2 LINE L2 3003 3238 -34 1545 204 84 39 chr1 84846513 84846953 -157817400 - MLT1C LTR MaLR 0 467 8 2254 82 3 7 chr1 84847615 84847908 -157816445 - AluSc SINE Alu -17 292 1 4125 182 24 10 chr1 84849748 84850551 -157813802 - L1MB7 LINE L1 0 6184 5371 1757 145 112 0 chr1 84850593 84850896 -157813457 - MER1B DNA MER1_type 0 337 1 1617 217 177 14 chr1 84852047 84852481 -157811872 - MLT1D LTR MaLR 0 505 1 319 231 11 33 chr1 84853049 84853110 -157811243 - MIR SINE MIR 0 262 202 2001 172 3 21 chr1 84853110 84853483 -157810870 - MER47A DNA MER2_type 0 366 1 319 231 11 33 chr1 84853483 84853512 -157810841 - MIR SINE MIR -60 202 174 371 299 216 19 chr1 84853568 84853836 -157810517 + L2 LINE L2 2563 2883 -431 246 271 17 0 chr1 84854083 84854142 -157810211 + L2 LINE L2 3246 3305 -8 1705 161 59 6 chr1 84854938 84855279 -157809074 - L1MA6 LINE L1 -5 6295 5937 11366 185 92 21 chr1 84855306 84856849 -157807504 - L1MA6 LINE L1 -743 5403 3970 2545 151 43 7 chr1 84856849 84857287 -157807066 + MSTB2 LTR MaLR 4 457 0 11366 185 92 21 chr1 84857287 84858585 -157805768 - L1MA6 LINE L1 -2176 3970 2454 228 208 21 0 chr1 84858759 84858807 -157805546 + (TA)n Simple_repeat Simple_repeat 2 50 0 272 268 115 31 chr1 84858941 84859117 -157805236 - L1MC/D LINE L1 -474 5630 5483 308 291 77 10 chr1 84859617 84859813 -157804540 - L1MC/D LINE L1 -1532 4597 4389 21 0 0 0 chr1 84860682 84860703 -157803650 + AT_rich Low_complexity Low_complexity 1 21 0 1789 126 8 8 chr1 84861271 84861526 -157802827 + AluSx SINE Alu 5 259 -53 393 306 58 24 chr1 84861604 84861898 -157802455 - HAL1 LINE L1 -730 1777 1474 604 158 20 72 chr1 84861912 84862064 -157802289 + MER3 DNA MER1_type 48 191 -18 348 307 137 24 chr1 84862131 84862336 -157802017 - L1MC/D LINE L1 -5021 1098 871 333 285 7 15 chr1 84862361 84862498 -157801855 + (TA)n Simple_repeat Simple_repeat 1 136 0 308 83 21 0 chr1 84862939 84862987 -157801366 + (CA)n Simple_repeat Simple_repeat 2 50 0 303 284 97 13 chr1 84863155 84863310 -157801043 - L1ME LINE L1 -3683 2743 2576 478 302 81 60 chr1 84863397 84863755 -157800598 - L1ME LINE L1 -4138 2469 2120 186 103 0 0 chr1 84863755 84863784 -157800569 + (TA)n Simple_repeat Simple_repeat 2 30 0 264 185 0 0 chr1 84863784 84863838 -157800515 + (CA)n Simple_repeat Simple_repeat 1 54 0 478 302 81 60 chr1 84863838 84863878 -157800475 - L1ME LINE L1 -4487 2120 2082 461 208 32 96 chr1 84863878 84864003 -157800350 - FLAM_A SINE Alu -16 117 1 478 302 81 60 chr1 84864003 84864271 -157800082 - L1ME LINE L1 -4525 2082 1821 2076 102 3 54 chr1 84864271 84864586 -157799767 + AluSx SINE Alu 1 299 -13 478 302 81 60 chr1 84864586 84865123 -157799230 - L1ME LINE L1 -4786 1821 1104 1600 338 48 4 chr1 84865123 84865667 -157798686 + MLT2F LTR ERVL 1 568 -95 192 342 32 32 chr1 84866906 84867061 -157797292 + L2 LINE L2 3150 3304 -9 319 296 23 0 chr1 84868197 84868285 -157796068 + L1MC4 LINE L1 6614 6703 -1339 593 286 46 34 chr1 84870673 84870911 -157793442 - MIR SINE MIR -19 243 3 560 279 138 28 chr1 84872189 84872426 -157791927 + MIR SINE MIR 5 261 -1 465 269 9 123 chr1 84872866 84873182 -157791171 + MLT1K LTR MaLR 302 581 -7 428 300 29 29 chr1 84873187 84873327 -157791026 - MIR SINE MIR -102 160 21 2234 114 0 0 chr1 84876513 84876810 -157787543 - AluSx SINE Alu -15 297 1 318 273 68 0 chr1 84877176 84877264 -157787089 + L2 LINE L2 3195 3288 -25 320 312 0 11 chr1 84877336 84877429 -157786924 + MIR SINE MIR 36 127 -81 336 224 13 0 chr1 84877651 84877727 -157786626 + MIR SINE MIR 186 262 0 2242 123 35 14 chr1 84878737 84879104 -157785249 - THE1C LTR MaLR 0 375 1 18860 120 13 2 chr1 84879130 84882957 -157781396 + L1PA8A LINE L1 2310 6124 -7 324 365 124 30 chr1 84883250 84883644 -157780709 - L2 LINE L2 -5 3267 2837 407 341 14 7 chr1 84886392 84886530 -157777823 - L2 LINE L2 0 3272 3134 189 0 0 0 chr1 84886547 84886568 -157777785 + (TA)n Simple_repeat Simple_repeat 1 21 0 1378 306 115 17 chr1 84886699 84887300 -157777053 - L2 LINE L2 -495 2819 2160 25 0 0 0 chr1 84887975 84888000 -157776353 + AT_rich Low_complexity Low_complexity 1 25 0 204 270 61 88 chr1 84888012 84888126 -157776227 - MIR SINE MIR -1 261 150 2295 94 0 7 chr1 84888126 84888425 -157775928 - AluSp SINE Alu -15 298 2 204 270 61 88 chr1 84888425 84888458 -157775895 - MIR SINE MIR -112 150 118 212 250 42 0 chr1 84888562 84888610 -157775743 + L2 LINE L2 3207 3256 -16 1763 115 0 33 chr1 84890078 84890348 -157774005 + AluSg SINE Alu 39 299 -11 336 292 77 26 chr1 84890756 84890989 -157773364 - MLT1J LTR MaLR -19 492 248 269 233 0 33 chr1 84891364 84891424 -157772929 + L2 LINE L2 3195 3252 -20 42 48 0 0 chr1 84891896 84891959 -157772394 + AT_rich Low_complexity Low_complexity 1 63 0 978 280 75 27 chr1 84891994 84893017 -157771336 - L1ME LINE L1 -348 5814 4747 656 276 6 18 chr1 84893021 84893191 -157771162 + MIR SINE MIR 1 168 -94 1970 104 3 71 chr1 84893213 84893539 -157770814 - AluSq SINE Alu -7 306 3 227 301 0 0 chr1 84893652 84893725 -157770628 - L1ME LINE L1 -1443 4703 4631 2111 141 0 19 chr1 84894003 84894380 -157769973 - L1MA4A LINE L1 -2 6301 5932 3676 177 16 7 chr1 84894380 84894997 -157769356 - L1M2 LINE L1 -6224 625 3 787 316 43 15 chr1 84895019 84895548 -157768805 - L1ME LINE L1 -1797 4349 3806 358 281 106 12 chr1 84897298 84897458 -157766895 - MIR SINE MIR 0 262 88 4367 198 24 16 chr1 84898329 84899874 -157764479 - L1MB8 LINE L1 0 6178 4627 265 369 142 6 chr1 84899966 84900142 -157764211 - MIR SINE MIR -6 256 57 4429 138 9 12 chr1 84900493 84901235 -157763118 + L1PA16 LINE L1 5423 6162 -4 468 261 52 0 chr1 84901266 84901419 -157762934 + L1MD2 LINE L1 6198 6358 -1 218 250 14 56 chr1 84901686 84901758 -157762595 - L2 LINE L2 -555 2759 2691 1081 243 33 13 chr1 84901758 84902059 -157762294 + L1MB8 LINE L1 4900 5206 -940 1229 195 51 45 chr1 84902063 84902355 -157761998 + L1M1 LINE L1 17 310 -7255 688 66 0 28 chr1 84902367 84902473 -157761880 + L1M1 LINE L1 2675 2777 -4788 * 5637 141 8 15 chr1 84902467 84903814 -157760539 + L1MA2 LINE L1 4800 6137 -167 3845 180 77 16 chr1 84903813 84904754 -157759599 + L1MB8 LINE L1 5188 6178 0 * 209 355 71 24 chr1 84905006 84905175 -157759178 - L3 LINE CR1 -89 1488 1312 368 180 172 31 chr1 84906755 84906883 -157757470 + MER69 DNA AcHobo 2381 2526 0 2433 48 7 0 chr1 84907048 84907338 -157757015 - AluY SINE Alu -2 309 18 822 280 164 19 chr1 84908762 84909352 -157755001 + L2 LINE L2 2608 3296 -17 259 264 22 22 chr1 84909479 84909570 -157754783 + GA-rich Low_complexity Low_complexity 2 92 0 187 256 47 0 chr1 84910536 84910579 -157753774 + L2 LINE L2 3186 3230 -42 346 265 131 7 chr1 84910642 84910780 -157753573 - MIR SINE MIR -85 123 20 363 346 193 20 chr1 84912841 84913532 -157750821 + L2 LINE L2 1607 2416 -898 182 164 0 164 chr1 84914782 84914843 -157749510 + L2 LINE L2 3262 3312 -1 375 286 89 0 chr1 84916453 84916565 -157747788 - L2 LINE L2 -8 3305 3184 481 323 15 58 chr1 84916846 84917106 -157747247 - L3 LINE CR1 -2 1575 1327 210 280 0 0 chr1 84917857 84917907 -157746446 - L2 LINE L2 0 3313 3264 219 103 0 0 chr1 84919406 84919445 -157744908 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1788 220 54 73 chr1 84921674 84922760 -157741593 - L1MC5 LINE L1 -60 7901 6866 437 130 13 0 chr1 84924098 84924175 -157740178 - MER116 DNA Mariner 0 80 3 1042 239 37 31 chr1 84924215 84924740 -157739613 - Charlie7 DNA MER1_type -1927 685 79 775 280 103 7 chr1 84924762 84925033 -157739320 - MLT1G LTR MaLR -293 297 1 501 296 133 5 chr1 84925033 84925236 -157739117 - L3 LINE CR1 -59 1518 1290 449 343 56 5 chr1 84926238 84926436 -157737917 - L3 LINE CR1 -504 1073 866 716 249 69 5 chr1 84926481 84926670 -157737683 - MIR SINE MIR -4 258 58 597 292 126 18 chr1 84927277 84927554 -157736799 + MLT1I LTR MaLR 99 405 -4 2270 105 0 3 chr1 84927572 84927876 -157736477 + AluSx SINE Alu 1 303 -9 436 280 191 0 chr1 84930020 84930188 -157734165 + MIR SINE MIR 51 250 -12 1271 246 81 28 chr1 84931015 84931512 -157732841 + LTR33A LTR ERVL 1 523 0 21 0 0 0 chr1 84933085 84933106 -157731247 + AT_rich Low_complexity Low_complexity 1 21 0 358 289 41 8 chr1 84933243 84933364 -157730989 + MIR SINE MIR 77 201 -61 226 356 23 0 chr1 84933609 84933642 -157730711 - L2 LINE L2 -256 3016 2985 312 102 0 0 chr1 84933642 84933691 -157730662 + (TG)n Simple_repeat Simple_repeat 2 50 0 226 356 23 0 chr1 84933691 84933744 -157730609 - L2 LINE L2 -287 2985 2928 405 330 24 94 chr1 84933986 84934283 -157730070 - L2 LINE L2 -2 3270 2995 185 235 44 88 chr1 84934320 84934388 -157729965 + L2 LINE L2 3241 3305 -8 518 317 119 38 chr1 84934468 84934948 -157729405 - L2 LINE L2 -469 2845 2327 237 256 85 123 chr1 84936163 84936374 -157727979 - L2 LINE L2 -5 3267 3065 286 152 19 38 chr1 84937040 84937145 -157727208 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 490 181 69 14 chr1 84937349 84937493 -157726860 - L1MC3 LINE L1 -59 7726 7575 2882 129 24 7 chr1 84937513 84937963 -157726390 - LTR22A LTR ERVK 0 458 1 183 80 0 0 chr1 84938150 84938175 -157726178 + (CA)n Simple_repeat Simple_repeat 1 25 0 392 266 40 40 chr1 84938370 84938547 -157725806 - MER5B DNA MER1_type -1 177 1 340 395 56 6 chr1 84938723 84938885 -157725468 + L2 LINE L2 3086 3255 -17 335 123 15 15 chr1 84939888 84939953 -157724400 + MLT1A1 LTR MaLR 2 66 -299 1672 186 57 28 chr1 84940403 84940757 -157723596 - MLT1A1 LTR MaLR 0 365 2 2135 61 18 0 chr1 84941756 84942033 -157722320 - L1PA8 LINE L1 -6 6166 5885 423 0 0 0 chr1 84942188 84942235 -157722118 + (TG)n Simple_repeat Simple_repeat 2 48 0 1587 201 29 35 chr1 84942463 84942837 -157721516 + MLT1A2 LTR MaLR 1 372 -2 184 319 128 32 chr1 84942910 84943004 -157721349 - L2 LINE L2 -2 3270 3168 1581 158 13 56 chr1 84943375 84943678 -157720675 + AluJb SINE Alu 5 294 -18 231 36 0 0 chr1 84943678 84943706 -157720647 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 280 175 100 67 chr1 84944023 84944143 -157720210 - MIR SINE MIR -16 246 123 180 200 0 0 chr1 84944791 84944831 -157719522 + (TG)n Simple_repeat Simple_repeat 2 41 0 256 226 0 24 chr1 84945153 84945237 -157719116 + (TTAA)n Simple_repeat Simple_repeat 3 84 0 1597 260 47 22 chr1 84945328 84945994 -157718359 + L1ME3A LINE L1 5270 5951 -219 919 168 0 0 chr1 84946153 84946290 -157718063 - FRAM SINE Alu -22 154 18 244 288 161 44 chr1 84946931 84947292 -157717061 + L2 LINE L2 2049 2451 -863 6353 85 7 20 chr1 84947892 84948053 -157716300 + L1PA10 LINE L1 5173 5335 -833 2272 120 10 0 chr1 84948053 84948362 -157715991 + AluSx SINE Alu 1 312 0 6353 85 7 20 chr1 84948362 84949206 -157715147 + L1PA10 LINE L1 5335 6165 -3 2381 258 71 7 chr1 84949350 84950044 -157714309 - MER21B LTR ERV1 -107 756 19 373 236 0 22 chr1 84950069 84950158 -157714195 - MER21B LTR ERV1 -776 87 1 263 354 14 48 chr1 84950172 84950319 -157714034 - MER91A DNA MER1_type -54 142 1 779 286 46 36 chr1 84950749 84951029 -157713324 - L2 LINE L2 0 3313 3031 459 0 0 0 chr1 84951069 84951120 -157713233 + (TG)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr1 84951178 84951200 -157713153 + AT_rich Low_complexity Low_complexity 1 22 0 252 114 0 0 chr1 84951527 84951562 -157712791 + Alu SINE Alu 5 39 -262 290 347 18 18 chr1 84951717 84951994 -157712359 - L1M4 LINE L1 -1995 4151 3875 485 197 29 15 chr1 84952107 84952244 -157712109 - MER103 DNA DNA -7 159 21 241 285 29 64 chr1 84952325 84952606 -157711747 - L1M4 LINE L1 -2290 3856 3586 45 34 0 0 chr1 84953694 84953753 -157710600 + AT_rich Low_complexity Low_complexity 1 59 0 2083 154 120 5 chr1 84955995 84956378 -157707975 + MSTA LTR MaLR 2 428 0 195 137 39 118 chr1 84956565 84956616 -157707737 - L2 LINE L2 -6 3307 3261 213 194 0 240 chr1 84956839 84956914 -157707439 + MER5B DNA MER1_type 1 34 -144 2523 56 0 0 chr1 84956914 84957216 -157707137 + AluY SINE Alu 3 304 -7 213 194 0 240 chr1 84957216 84957269 -157707084 + MER5B DNA MER1_type 34 98 -80 209 270 0 0 chr1 84960170 84960207 -157704146 - L3 LINE CR1 -22 1555 1519 316 373 38 25 chr1 84960568 84960726 -157703627 - MIR3 SINE MIR -9 199 40 551 230 204 17 chr1 84960761 84960974 -157703379 + MIR SINE MIR 1 248 -14 305 353 30 25 chr1 84961150 84961351 -157703002 - MLT1I LTR MaLR -137 272 71 283 326 84 90 chr1 84962291 84962625 -157701728 + L2 LINE L2 2939 3270 -2 1200 175 57 93 chr1 84962866 84963254 -157701099 - MLT1A2 LTR MaLR 0 374 1 439 147 0 27 chr1 84965073 84965148 -157699205 + MER20 DNA MER1_type 146 218 -1 467 291 45 17 chr1 84967436 84967615 -157696738 - MIR3 SINE MIR -9 199 16 349 322 164 20 chr1 84967635 84967787 -157696566 + L2 LINE L2 3099 3272 0 217 235 0 44 chr1 84967891 84967959 -157696394 + A-rich Low_complexity Low_complexity 4 68 0 264 348 18 50 chr1 84968996 84969217 -157695136 + L2 LINE L2 2868 3081 -232 302 323 21 21 chr1 84969234 84969327 -157695026 + L2 LINE L2 3203 3295 -18 21 0 0 0 chr1 84969601 84969622 -157694731 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr1 84971052 84971082 -157693271 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 233 276 0 0 chr1 84971326 84971384 -157692969 + (ATG)n Simple_repeat Simple_repeat 2 59 0 207 69 0 0 chr1 84973651 84973680 -157690673 + (TCTCC)n Simple_repeat Simple_repeat 3 31 0 259 306 0 10 chr1 84974483 84974581 -157689772 + (TA)n Simple_repeat Simple_repeat 1 97 0 570 329 36 6 chr1 84975516 84975683 -157688670 - MIR3 SINE MIR -21 187 16 2612 0 7 0 chr1 84977151 84977434 -157686919 - AluYa5 SINE Alu 0 311 27 209 163 20 0 chr1 84977631 84977680 -157686673 + CT-rich Low_complexity Low_complexity 4 53 0 772 222 82 5 chr1 84977846 84978040 -157686313 - MIR SINE MIR -30 232 24 906 268 154 10 chr1 84978043 84978427 -157685926 - MLT1J2 LTR MaLR -8 442 4 22 0 0 0 chr1 84979842 84979864 -157684489 + AT_rich Low_complexity Low_complexity 1 22 0 250 306 120 37 chr1 84979916 84980158 -157684195 + L3 LINE CR1 660 921 -656 2125 134 0 0 chr1 84980286 84980591 -157683762 - AluSx SINE Alu -6 306 2 280 370 60 0 chr1 84980942 84981158 -157683195 - L1ME LINE L1 -581 5540 5312 331 329 216 11 chr1 84981227 84981574 -157682779 + L3 LINE CR1 1137 1554 -23 1373 215 109 20 chr1 84983898 84984297 -157680056 + L1ME LINE L1 4822 5298 -864 355 68 34 0 chr1 84984297 84984356 -157679997 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1373 215 109 20 chr1 84984356 84984505 -157679848 + L1ME LINE L1 5298 5432 -730 282 379 0 0 chr1 84984509 84984596 -157679757 - L2 LINE L2 -47 3225 3139 193 315 35 113 chr1 84984884 84984944 -157679409 - L2 LINE L2 -385 2929 2866 1987 163 76 22 chr1 84984944 84985350 -157679003 + MSTA LTR MaLR 1 428 0 193 315 35 113 chr1 84985350 84985546 -157678807 - L2 LINE L2 -448 2866 2693 395 367 177 0 chr1 84985546 84985772 -157678581 - L2 LINE L2 -829 2485 2220 1312 268 181 22 chr1 84985855 84986362 -157677991 - MLT1E LTR MaLR -2 591 4 1169 60 0 0 chr1 84986381 84986532 -157677821 - L1PA4 LINE L1 0 6155 6005 1730 184 63 19 chr1 84986533 84986898 -157677455 - MSTD LTR MaLR -2 394 14 3397 240 96 38 chr1 84986913 84988491 -157675862 - MSTD-int LTR MaLR -7 1728 5 1504 202 90 11 chr1 84988497 84988864 -157675489 - MSTD LTR MaLR 0 396 1 1213 176 50 0 chr1 84989342 84989563 -157674790 + MER46A DNA MER2_type 1 232 -4 1917 119 4 7 chr1 84990553 84990830 -157673523 - AluSq SINE Alu -3 310 35 356 327 173 7 chr1 84991763 84991913 -157672440 + MLT1J LTR MaLR 13 187 -324 2163 104 7 13 chr1 84991951 84992249 -157672104 + AluSx SINE Alu 1 296 -16 1042 277 22 35 chr1 84992806 84993178 -157671175 + L1ME1 LINE L1 3975 4341 -1805 183 80 0 0 chr1 84993178 84993203 -157671150 + (CATATA)n Simple_repeat Simple_repeat 3 27 0 1042 277 22 35 chr1 84993203 84993289 -157671064 + L1ME1 LINE L1 4341 4427 -1719 484 289 70 0 chr1 84993289 84993417 -157670936 + LTR40b LTR ERVL 3 139 -323 1229 204 32 7 chr1 84993421 84993730 -157670623 + L1ME1 LINE L1 4611 4927 -1219 1529 173 151 24 chr1 84993736 84994242 -157670111 - MLT2A2 LTR ERVL 0 554 1 1950 241 76 15 chr1 84994249 84994854 -157669499 + L1ME1 LINE L1 5525 6166 0 2073 112 18 0 chr1 84995223 84995555 -157668798 + AluSx SINE Alu 1 337 0 246 32 0 0 chr1 84996210 84996241 -157668112 + (TC)n Simple_repeat Simple_repeat 2 32 0 285 29 0 0 chr1 84996242 84996276 -157668077 + (CA)n Simple_repeat Simple_repeat 2 35 0 183 42 0 0 chr1 84996280 84996304 -157668049 + (GA)n Simple_repeat Simple_repeat 1 24 0 23 68 0 0 chr1 84996416 84996460 -157667893 + AT_rich Low_complexity Low_complexity 1 44 0 991 286 112 26 chr1 84997881 84999386 -157664967 + L1MC1 LINE L1 1285 3076 -3568 325 301 68 32 chr1 84999369 84999618 -157664735 + L1MC1 LINE L1 3647 3904 -2740 * 2297 132 41 41 chr1 84999858 85000275 -157664078 + MSTB LTR MaLR 4 420 -6 2419 109 17 3 chr1 85000496 85000844 -157663509 - THE1C LTR MaLR 0 375 23 21 0 0 0 chr1 85002406 85002427 -157661926 + AT_rich Low_complexity Low_complexity 1 21 0 452 259 150 0 chr1 85002702 85002849 -157661504 - MIR SINE MIR -74 188 20 6232 183 31 5 chr1 85003193 85005062 -157659291 + L1MC1 LINE L1 4907 6826 -5 241 330 68 11 chr1 85005832 85005920 -157658433 + MIR SINE MIR 12 104 -158 285 216 0 0 chr1 85006090 85006141 -157658212 + MIR SINE MIR 72 122 -140 2248 106 3 0 chr1 85006500 85006793 -157657560 + AluSc SINE Alu 1 294 -15 233 315 0 11 chr1 85007066 85007155 -157657198 - L1MEc LINE L1 -5576 820 733 7028 31 2 1 chr1 85007155 85007993 -157656360 + L1PA4 LINE L1 5315 6153 -2 198 0 0 0 chr1 85008366 85008388 -157655965 + (A)n Simple_repeat Simple_repeat 1 22 0 775 220 136 18 chr1 85008388 85008674 -157655679 + L1MEc LINE L1 810 1129 -5267 208 291 18 0 chr1 85008676 85008731 -157655622 - L2 LINE L2 -302 3011 2956 594 160 23 0 chr1 85008819 85008950 -157655403 + (TA)n Simple_repeat Simple_repeat 1 134 0 243 287 74 66 chr1 85008951 85009073 -157655280 - MIR SINE MIR -59 203 81 486 289 74 61 chr1 85009129 85009440 -157654913 - MLT1H LTR MaLR -183 366 52 2070 141 86 30 chr1 85009690 85010095 -157654258 - MSTA LTR MaLR 0 428 1 309 140 0 0 chr1 85010304 85010361 -157653992 + (CA)n Simple_repeat Simple_repeat 2 58 0 1896 199 19 25 chr1 85010363 85010830 -157653523 - MER101B LTR ERV1 -62 412 1 219 69 0 0 chr1 85011943 85011972 -157652381 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 423 256 64 24 chr1 85012252 85012377 -157651976 - MIR SINE MIR -29 233 104 1568 199 66 14 chr1 85012500 85012847 -157651506 - MLT1A1 LTR MaLR 0 365 1 273 128 0 0 chr1 85013007 85013046 -157651307 - MSTB LTR MaLR 0 428 390 1988 134 10 3 chr1 85013046 85013337 -157651016 + AluSq SINE Alu 1 293 -20 359 37 0 37 chr1 85013349 85013403 -157650950 + (GGAAA)n Simple_repeat Simple_repeat 2 53 0 2508 120 22 27 chr1 85013403 85013804 -157650549 - MSTB LTR MaLR -27 399 1 292 270 68 0 chr1 85013804 85013878 -157650475 + L2 LINE L2 3171 3249 -23 390 309 29 0 chr1 85013885 85014024 -157650329 + MIR SINE MIR 114 256 -6 282 145 48 0 chr1 85014173 85014235 -157650118 - LTR41 LTR ERVL -106 667 603 1302 204 48 89 chr1 85015726 85015886 -157648467 - LTR41 LTR ERVL -10 763 598 2488 58 0 55 chr1 85015886 85016215 -157648138 + AluY SINE Alu 1 311 0 1302 204 48 89 chr1 85016215 85016490 -157647863 - LTR41 LTR ERVL -175 598 346 465 225 62 38 chr1 85016511 85016671 -157647682 - LTR41 LTR ERVL -568 205 42 1848 186 31 20 chr1 85019471 85019917 -157644436 + L1MB4 LINE L1 5713 6163 -17 390 284 63 53 chr1 85025243 85025433 -157638920 - MIR SINE MIR -51 211 20 883 290 148 11 chr1 85025717 85026341 -157638012 - L2 LINE L2 -5 3308 2591 1039 255 92 0 chr1 85026352 85026634 -157637719 + L2 LINE L2 1657 1964 -1350 366 304 49 93 chr1 85026637 85026841 -157637512 + MER91A DNA MER1_type 2 196 0 * 2702 259 48 83 chr1 85026841 85027415 -157636938 + L2 LINE L2 1960 2553 -760 248 53 0 0 chr1 85027415 85027453 -157636900 + L1MA3 LINE L1 6268 6305 0 2702 259 48 83 chr1 85027453 85028246 -157636107 + L2 LINE L2 2553 3312 -1 296 161 0 36 chr1 85028470 85028526 -157635827 - L2 LINE L2 -4 3309 3256 227 200 22 0 chr1 85030621 85030666 -157633687 - MER5B DNA MER1_type -64 114 69 258 306 35 0 chr1 85031387 85031472 -157632881 - L3 LINE CR1 -1 1576 1489 646 169 155 35 chr1 85031547 85031689 -157632664 - MIR SINE MIR -101 161 3 254 264 157 41 chr1 85032235 85032356 -157631997 - MIR3 SINE MIR -73 135 1 320 349 59 26 chr1 85033342 85033494 -157630859 - L2 LINE L2 0 3272 3116 1276 293 91 53 chr1 85033973 85034114 -157630239 - MER115 DNA AcHobo -5 688 554 2521 138 26 9 chr1 85034114 85034535 -157629818 - MSTA LTR MaLR 0 428 1 9202 174 24 2 chr1 85034535 85036151 -157628202 - MSTA-int LTR MaLR 0 1651 1 2700 133 24 5 chr1 85036151 85036571 -157627782 - MSTA LTR MaLR 0 428 1 1276 293 91 53 chr1 85036571 85037089 -157627264 - MER115 DNA AcHobo -138 555 2 941 251 87 22 chr1 85037921 85038244 -157626109 + L2 LINE L2 1893 2236 -1078 535 288 171 29 chr1 85038321 85039553 -157624800 + L1ME3A LINE L1 2522 3938 -2208 354 289 99 9 chr1 85039644 85039855 -157624498 + L1ME3A LINE L1 4324 4553 -1593 673 313 30 26 chr1 85039904 85040434 -157623919 + L1ME3A LINE L1 4736 5267 -879 630 279 85 14 chr1 85040449 85040865 -157623488 + L1ME3A LINE L1 5496 5947 -223 1797 144 42 69 chr1 85041164 85041256 -157623097 + L1MA8 LINE L1 5681 5774 -517 381 43 0 0 chr1 85041256 85041303 -157623050 + (TG)n Simple_repeat Simple_repeat 2 48 0 1797 144 42 69 chr1 85041303 85041472 -157622881 + L1MA8 LINE L1 5774 5946 -345 2774 10 0 0 chr1 85041472 85041775 -157622578 + AluYb8 SINE Alu 1 303 -15 1797 144 42 69 chr1 85041775 85041874 -157622479 + L1MA8 LINE L1 5946 6032 -259 2394 86 0 0 chr1 85041874 85042175 -157622178 + AluSp SINE Alu 6 306 -7 1797 144 42 69 chr1 85042175 85042216 -157622137 + L1MA8 LINE L1 6032 6073 -218 211 196 0 36 chr1 85043450 85043469 -157620884 + A-rich Low_complexity Low_complexity 1 19 -35 900 181 13 26 chr1 85043469 85043701 -157620652 + L1MA8 LINE L1 6060 6288 -3 211 196 0 36 chr1 85043701 85043737 -157620616 + A-rich Low_complexity Low_complexity 19 54 0 307 283 33 42 chr1 85043737 85043857 -157620496 + L1MB7 LINE L1 5653 5771 -350 778 207 58 0 chr1 85043859 85044033 -157620320 + L1MB7 LINE L1 5939 6122 -62 1491 170 52 40 chr1 85044178 85044507 -157619846 - MER1B DNA MER1_type 0 339 7 498 264 26 116 chr1 85044956 85045401 -157618952 + MLT1J2 LTR MaLR 61 448 -2 216 67 0 0 chr1 85045432 85045462 -157618891 + (GA)n Simple_repeat Simple_repeat 1 30 0 253 280 40 0 chr1 85045710 85045785 -157618568 - L2 LINE L2 0 3313 3236 269 300 172 26 chr1 85046157 85046384 -157617969 + MLT1J2 LTR MaLR 191 450 0 566 282 17 40 chr1 85047975 85048149 -157616204 - MIR3 SINE MIR -1 207 38 228 254 34 0 chr1 85048637 85048696 -157615657 + CT-rich Low_complexity Low_complexity 4 64 0 2136 161 78 2 chr1 85049537 85049935 -157614418 - MSTA LTR MaLR 0 428 1 2332 89 3 3 chr1 85050706 85051008 -157613345 + AluSg1 SINE Alu 1 302 -7 215 317 79 30 chr1 85051305 85051406 -157612947 + L3b LINE CR1 1441 1546 -37 766 232 191 0 chr1 85053515 85053735 -157610618 - MIR SINE MIR 0 262 1 29 28 0 0 chr1 85054027 85054063 -157610290 + AT_rich Low_complexity Low_complexity 1 36 0 378 0 0 0 chr1 85054063 85054105 -157610248 + (CA)n Simple_repeat Simple_repeat 2 43 0 238 219 62 0 chr1 85055558 85055622 -157608731 - L1M4 LINE L1 -1794 4352 4285 1694 272 67 22 chr1 85055652 85056324 -157608029 + HsTC2c DNA Tc2 23 724 -5 1331 262 64 74 chr1 85056388 85057743 -157606610 - L1M4 LINE L1 -1978 4168 2830 649 93 68 0 chr1 85057743 85057861 -157606492 - L1MA9 LINE L1 -11 6301 6176 1331 262 64 74 chr1 85057861 85058082 -157606271 - L1M4 LINE L1 -3316 2830 2608 26 0 0 0 chr1 85058761 85058787 -157605566 + AT_rich Low_complexity Low_complexity 1 26 0 397 287 32 51 chr1 85059325 85059639 -157604714 + L1ME4a LINE L1 5644 5951 -219 234 0 0 0 chr1 85059844 85059870 -157604483 + (AAATG)n Simple_repeat Simple_repeat 3 28 0 335 40 80 0 chr1 85060624 85060674 -157603679 + MADE1 DNA Mariner 1 54 -26 25 0 0 0 chr1 85060721 85060746 -157603607 + AT_rich Low_complexity Low_complexity 1 25 0 545 334 41 41 chr1 85060831 85061247 -157603106 - L1ME4a LINE L1 -178 5943 5528 1870 278 52 32 chr1 85063649 85064480 -157599873 + L1MEc LINE L1 34 880 -5516 340 179 106 32 chr1 85064485 85064608 -157599745 + L1M4 LINE L1 8 139 -6403 337 271 80 20 chr1 85065265 85065416 -157598937 - MIR SINE MIR -82 180 21 624 303 124 47 chr1 85066306 85066979 -157597374 + L2 LINE L2 2573 3313 0 180 0 0 0 chr1 85067077 85067097 -157597256 + (TG)n Simple_repeat Simple_repeat 1 20 0 300 252 47 28 chr1 85067134 85067241 -157597112 + L1ME4a LINE L1 5991 6099 -22 282 231 13 26 chr1 85067549 85067627 -157596726 + L2 LINE L2 3195 3271 -1 426 307 90 26 chr1 85069269 85069458 -157594895 + MIR SINE MIR 61 261 -1 753 230 163 45 chr1 85069565 85069878 -157594475 + MLT1K LTR MaLR 126 475 -113 210 254 148 25 chr1 85070444 85070566 -157593787 + L2 LINE L2 218 354 -2960 951 147 32 13 chr1 85070575 85070732 -157593621 + MER5A DNA MER1_type 7 166 -23 788 315 98 33 chr1 85070710 85071230 -157593123 + L2 LINE L2 331 884 -2430 * 1106 329 113 25 chr1 85071230 85072301 -157592052 + L2 LINE L2 2149 3312 -1 4975 186 51 26 chr1 85074406 85075984 -157588369 - L1MB1 LINE L1 -1 6167 4631 1329 202 58 47 chr1 85075984 85076052 -157588301 - MLT1A1 LTR MaLR 0 365 299 2167 98 17 0 chr1 85076052 85076174 -157588179 + AluSc SINE Alu 1 119 -190 279 0 0 0 chr1 85076174 85076205 -157588148 + (CA)n Simple_repeat Simple_repeat 2 32 0 2167 98 17 0 chr1 85076205 85076369 -157587984 + AluSc SINE Alu 119 292 -17 1329 202 58 47 chr1 85076369 85076661 -157587692 - MLT1A1 LTR MaLR -66 299 1 4975 186 51 26 chr1 85076661 85077185 -157587168 - L1MB1 LINE L1 -1537 4631 4010 4122 59 4 0 chr1 85077216 85077741 -157586612 - L1PA7 LINE L1 0 6154 5628 2824 92 8 10 chr1 85077742 85081089 -157583264 - L1P3 LINE L1 -465 5689 2151 7432 37 1 0 chr1 85081089 85082062 -157582291 + L1P LINE L1 2548 3521 -2625 1158 65 0 0 chr1 85082324 85082477 -157581876 - L1PA4 LINE L1 0 6155 6003 1574 187 63 19 chr1 85082477 85082840 -157581513 - MSTD LTR MaLR -4 392 14 3073 244 123 85 chr1 85082862 85084433 -157579920 - MSTD-int LTR MaLR -16 1635 6 1476 209 87 11 chr1 85084439 85084807 -157579546 - MSTD LTR MaLR 0 396 1 1197 176 50 0 chr1 85085163 85085384 -157578969 + MER46A DNA MER2_type 1 232 -4 1880 126 4 7 chr1 85086374 85086651 -157577702 - AluSq SINE Alu -3 310 35 314 327 173 7 chr1 85087585 85087735 -157576618 + MLT1J LTR MaLR 13 187 -324 2168 110 7 13 chr1 85087773 85088073 -157576280 + AluSx SINE Alu 1 298 -14 967 278 20 28 chr1 85088630 85089000 -157575353 + L1ME1 LINE L1 3975 4342 -1804 183 80 0 0 chr1 85089000 85089025 -157575328 + (TA)n Simple_repeat Simple_repeat 2 26 0 967 278 20 28 chr1 85089025 85089111 -157575242 + L1ME1 LINE L1 4342 4427 -1719 444 289 70 0 chr1 85089111 85089239 -157575114 + LTR40b LTR ERVL 3 139 -323 1150 204 32 7 chr1 85089243 85089552 -157574801 + L1ME1 LINE L1 4611 4927 -1219 1495 176 97 46 chr1 85089558 85090089 -157574264 - MLT2A2 LTR ERVL 0 554 1 1777 241 76 15 chr1 85090096 85090701 -157573652 + L1ME1 LINE L1 5525 6166 0 2098 108 18 0 chr1 85091070 85091398 -157572955 + AluSx SINE Alu 1 333 0 246 32 0 0 chr1 85092053 85092084 -157572269 + (TC)n Simple_repeat Simple_repeat 2 32 0 249 33 0 0 chr1 85092085 85092115 -157572238 + (CA)n Simple_repeat Simple_repeat 2 31 0 183 42 0 0 chr1 85092119 85092143 -157572210 + (GA)n Simple_repeat Simple_repeat 1 24 0 23 68 0 0 chr1 85092255 85092299 -157572054 + AT_rich Low_complexity Low_complexity 1 44 0 536 203 189 33 chr1 85094651 85094804 -157569549 - MER5B DNA MER1_type -1 177 1 390 303 18 30 chr1 85096007 85096172 -157568181 + L2 LINE L2 2919 3081 -191 408 265 127 49 chr1 85096357 85096602 -157567751 + L1ME3 LINE L1 5618 5881 -281 2306 163 40 18 chr1 85096709 85097164 -157567189 - MLT1C LTR MaLR 0 467 3 36 23 0 0 chr1 85097378 85097421 -157566932 + AT_rich Low_complexity Low_complexity 1 43 0 196 276 276 0 chr1 85097435 85097522 -157566831 + L2 LINE L2 3148 3258 -14 187 256 122 12 chr1 85097927 85098009 -157566344 + MIR SINE MIR 122 212 -50 233 338 169 0 chr1 85098147 85098283 -157566070 - L3b LINE CR1 -86 1497 1339 344 359 21 17 chr1 85098764 85098945 -157565408 - MIR SINE MIR -56 206 22 2161 104 0 7 chr1 85098967 85099255 -157565098 + AluSc SINE Alu 24 309 0 195 242 75 150 chr1 85099265 85099385 -157564968 - L2 LINE L2 -25 3247 3137 245 313 23 51 chr1 85099895 85100071 -157564282 + MLT1J LTR MaLR 290 460 -51 219 200 44 0 chr1 85101315 85101360 -157562993 - L2 LINE L2 -1 3312 3266 184 153 56 14 chr1 85102212 85102284 -157562069 + CT-rich Low_complexity Low_complexity 3 77 0 309 272 32 48 chr1 85102403 85102528 -157561825 + L2 LINE L2 2677 2799 -515 647 131 10 0 chr1 85102619 85102718 -157561635 + U6 snRNA snRNA 2 101 -6 4666 98 7 38 chr1 85102963 85103732 -157560621 - L1P3 LINE L1 -3251 3210 2466 7792 37 1 0 chr1 85103732 85104749 -157559604 + L1P LINE L1 2548 3565 -2581 * 11863 117 12 45 chr1 85104745 85107201 -157557152 - L1P3 LINE L1 -3999 2462 1 6270 253 44 37 chr1 85107201 85109271 -157555082 - L1 LINE L1 -2120 3850 2081 198 118 0 0 chr1 85109271 85109305 -157555048 + (TG)n Simple_repeat Simple_repeat 1 34 0 6270 253 44 37 chr1 85109305 85111402 -157552951 - L1 LINE L1 -3889 2081 1 734 283 41 16 chr1 85111408 85111652 -157552701 - MIR SINE MIR -11 251 2 247 256 37 37 chr1 85112028 85112110 -157552243 - L2 LINE L2 -273 2999 2918 419 282 0 8 chr1 85112196 85112327 -157552026 - MER94 DNA DNA -4 130 1 277 122 0 0 chr1 85112403 85112452 -157551901 - L1PA16 LINE L1 -26 6140 6092 288 239 113 0 chr1 85112506 85112577 -157551776 - Tigger5 DNA MER2_type -2244 79 1 21 71 0 0 chr1 85112616 85112658 -157551695 + AT_rich Low_complexity Low_complexity 1 42 0 232 357 103 45 chr1 85113105 85113416 -157550937 - L2 LINE L2 -621 2693 2365 183 239 284 11 chr1 85113958 85114046 -157550307 + MIR3 SINE MIR 83 194 -14 524 302 134 4 chr1 85114365 85114597 -157549756 - MIR SINE MIR 0 262 1 988 293 34 60 chr1 85115908 85116444 -157547909 - LTR67 LTR ERVL -16 541 20 380 410 50 21 chr1 85117159 85117535 -157546818 + L2 LINE L2 2255 2641 -673 482 0 17 0 chr1 85117637 85117695 -157546658 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 537 325 30 10 chr1 85117710 85117907 -157546446 + MIR SINE MIR 48 248 -14 271 258 76 0 chr1 85118226 85118292 -157546061 - L2 LINE L2 0 3272 3202 282 132 0 0 chr1 85118855 85118908 -157545445 + (TC)n Simple_repeat Simple_repeat 2 54 0 771 223 97 0 chr1 85119163 85119369 -157544984 + MIR SINE MIR 33 258 -4 186 349 20 46 chr1 85119724 85119876 -157544477 - L2 LINE L2 -534 2780 2633 572 255 78 56 chr1 85120057 85120397 -157543956 - L2 LINE L2 -169 3144 2800 403 325 48 24 chr1 85120398 85120647 -157543706 - L2 LINE L2 -1351 1963 1709 882 253 90 4 chr1 85121184 85121417 -157542936 + MIR SINE MIR 5 257 -5 1733 167 7 3 chr1 85121442 85121735 -157542618 + AluJb SINE Alu 11 304 -8 188 247 101 45 chr1 85121760 85121849 -157542504 - MIR SINE MIR -41 221 128 1981 196 32 0 chr1 85121869 85122216 -157542137 + MLT1A1 LTR MaLR 3 360 -5 328 328 0 1 chr1 85122219 85122319 -157542034 - MIR SINE MIR -102 106 8 21 0 0 0 chr1 85122678 85122699 -157541654 + AT_rich Low_complexity Low_complexity 1 21 0 584 281 76 5 chr1 85122802 85123012 -157541341 + MIR SINE MIR 20 244 -18 2242 158 115 16 chr1 85123878 85124303 -157540050 - MLT1C LTR MaLR 0 467 1 25 75 0 0 chr1 85124303 85124356 -157539997 + AT_rich Low_complexity Low_complexity 1 53 0 189 0 0 0 chr1 85125942 85125963 -157538390 + (T)n Simple_repeat Simple_repeat 1 21 0 7211 30 2 1 chr1 85126337 85127175 -157537178 - L1PA4 LINE L1 -2 6153 5315 268 261 11 22 chr1 85127172 85127264 -157537089 + L1MEc LINE L1 730 820 -5576 * 2256 106 3 0 chr1 85127537 85127829 -157536524 - AluSc SINE Alu -16 293 1 13737 64 25 8 chr1 85178467 85180363 -157483990 + HERVL LTR ERVL 3138 5066 -588 372 220 63 6 chr1 85180545 85180704 -157483649 + HERVH LTR ERV1 333 500 -7213 * 15026 94 8 20 chr1 85180688 85183084 -157481269 + HERVH LTR ERV1 630 2995 -4718 846 129 27 0 chr1 85183063 85183210 -157481143 + HERVH LTR ERV1 3140 3290 -4423 * 2986 111 31 2 chr1 85183200 85183688 -157480665 + HERVH LTR ERV1 3492 3993 -3720 4023 149 0 1 chr1 85183690 85184353 -157480000 + HERVH LTR ERV1 4488 5149 -2564 1055 126 6 0 chr1 85184354 85184536 -157479817 + HERVH LTR ERV1 5600 5782 -1931 23346 68 13 0 chr1 85184685 85187799 -157476554 - HERVL-A1 LTR ERVL -2501 3153 1 2447 128 98 5 chr1 85187799 85188205 -157476148 - MLT2A1 LTR ERVL 0 444 1 592 295 11 89 chr1 85188765 85189046 -157475307 + L2 LINE L2 3012 3270 -2 263 260 82 0 chr1 85189275 85189348 -157475005 - MIR SINE MIR -86 122 44 218 270 226 35 chr1 85190465 85190580 -157473773 - L2 LINE L2 -2 3270 3134 251 348 96 0 chr1 85190674 85190789 -157473564 + L2 LINE L2 3181 3306 -7 498 248 34 0 chr1 85191819 85191936 -157472417 + MIR SINE MIR 120 240 -22 243 61 0 0 chr1 85192035 85192068 -157472285 + (CA)n Simple_repeat Simple_repeat 1 33 0 193 271 0 0 chr1 85192286 85192334 -157472019 + L2 LINE L2 3261 3308 -5 233 197 15 45 chr1 85193237 85193303 -157471050 + MLT1J2 LTR MaLR 364 427 -23 591 320 36 18 chr1 85193328 85193652 -157470701 - MLT1I LTR MaLR -18 391 79 249 211 44 33 chr1 85194199 85194289 -157470064 + MLT1J2 LTR MaLR 356 446 -4 1737 144 39 83 chr1 85194580 85194942 -157469411 - MER7A DNA MER2_type -1 345 2 201 350 22 58 chr1 85195573 85195710 -157468643 - L2 LINE L2 -200 3072 2941 645 222 126 0 chr1 85195959 85196126 -157468227 + LTR40a LTR ERVL 9 196 -323 6257 46 4 0 chr1 85196169 85196980 -157467373 - L1PA5 LINE L1 -1162 4984 4171 7180 44 7 2 chr1 85196980 85198137 -157466216 + L1PA5 LINE L1 4982 6142 -12 459 48 0 0 chr1 85198140 85198202 -157466151 + (TA)n Simple_repeat Simple_repeat 2 63 0 906 220 12 56 chr1 85198225 85198475 -157465878 + LTR40b LTR ERVL 224 462 0 502 269 48 85 chr1 85198973 85199244 -157465109 - MLT1J LTR MaLR -249 262 2 365 270 20 20 chr1 85200281 85200381 -157463972 + L2 LINE L2 2657 2756 -558 495 335 118 26 chr1 85200630 85201012 -157463341 + L2 LINE L2 2887 3303 -10 1746 221 53 50 chr1 85201056 85201320 -157463033 - L1ME3A LINE L1 -5 6165 5903 1953 144 29 26 chr1 85201320 85201661 -157462692 + MER2 DNA MER2_type 1 342 -2 1746 221 53 50 chr1 85201661 85201956 -157462397 - L1ME3A LINE L1 -267 5903 5601 2269 109 0 0 chr1 85201956 85202260 -157462093 - AluSq SINE Alu -9 304 1 1746 221 53 50 chr1 85202260 85202322 -157462031 - L1ME3A LINE L1 -569 5601 5541 337 192 0 14 chr1 85202526 85202599 -157461754 + LTR43 LTR ERV1 224 295 -307 337 223 94 35 chr1 85202872 85202988 -157461365 - L1MEd LINE L1 -5167 952 818 2167 146 2 67 chr1 85202988 85203405 -157460948 - MLT1B LTR MaLR 0 390 1 337 223 94 35 chr1 85203405 85203490 -157460863 - L1MEd LINE L1 -5301 818 739 390 290 133 31 chr1 85203618 85203873 -157460480 - L1MEd LINE L1 -5584 535 255 215 130 0 65 chr1 85204214 85204260 -157460093 + (TTTCC)n Simple_repeat Simple_repeat 4 46 0 509 267 18 6 chr1 85204465 85204630 -157459723 + L1MC4a LINE L1 6441 6607 -1201 180 111 0 0 chr1 85204720 85204747 -157459606 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 10015 182 39 42 chr1 85204936 85207715 -157456638 - L1M2 LINE L1 -744 5402 2664 250 181 14 14 chr1 85207768 85207840 -157456513 + (TA)n Simple_repeat Simple_repeat 1 72 0 309 202 83 12 chr1 85207846 85207930 -157456423 - L1MC4 LINE L1 -1339 6703 6614 263 212 30 40 chr1 85207932 85208031 -157456322 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 439 137 0 91 chr1 85208033 85208230 -157456123 + (TA)n Simple_repeat Simple_repeat 2 180 0 267 162 9 48 chr1 85208303 85208408 -157455945 + (TA)n Simple_repeat Simple_repeat 1 101 0 1179 82 0 0 chr1 85208519 85208726 -157455627 + L1PA3 LINE L1 5993 6199 0 23 0 0 0 chr1 85208735 85208758 -157455595 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 85210352 85210373 -157453980 + AT_rich Low_complexity Low_complexity 1 21 0 1228 205 121 76 chr1 85210421 85210919 -157453434 - MLT2B1 LTR ERVL 0 520 1 2353 106 0 0 chr1 85211164 85211467 -157452886 + AluSc SINE Alu 1 303 -6 180 0 0 0 chr1 85212563 85212583 -157451770 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 508 272 62 22 chr1 85214194 85214516 -157449837 + L1M4 LINE L1 3155 3501 -2645 3323 219 58 18 chr1 85214521 85215545 -157448808 + L1M4 LINE L1 3813 4877 -1269 1414 167 13 0 chr1 85215564 85215792 -157448561 + AluJb SINE Alu 82 312 0 1021 175 38 0 chr1 85215877 85216088 -157448265 + L1MD1 LINE L1 6024 6242 0 2141 136 3 0 chr1 85216237 85216547 -157447806 + AluSx SINE Alu 1 311 -1 766 231 59 10 chr1 85217820 85218160 -157446193 - MSTD LTR MaLR 0 396 1 247 239 22 43 chr1 85218304 85218396 -157445957 + L1MC4 LINE L1 6614 6703 -1339 200 227 0 0 chr1 85218397 85218441 -157445912 + (TA)n Simple_repeat Simple_repeat 1 44 0 215 53 0 53 chr1 85218457 85218495 -157445858 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 406 345 61 29 chr1 85218707 85219349 -157445004 - ERVL LTR ERVL -648 5116 4419 627 241 78 12 chr1 85219350 85219516 -157444837 - MIR SINE MIR -77 185 9 187 321 90 78 chr1 85219793 85220061 -157444292 + L2 LINE L2 2703 2973 -341 2481 179 72 23 chr1 85220100 85220631 -157443722 + MER74A LTR ERVL 2 558 0 267 317 125 0 chr1 85220726 85220846 -157443507 + L2 LINE L2 3138 3272 0 239 149 0 21 chr1 85221328 85221375 -157442978 - L2 LINE L2 -17 3255 3210 248 225 25 75 chr1 85221783 85221863 -157442490 + L2 LINE L2 3238 3313 0 623 196 13 95 chr1 85222370 85222528 -157441825 + MIR SINE MIR 45 189 -73 492 275 51 28 chr1 85222570 85222748 -157441605 - MIR SINE MIR -65 197 16 219 309 51 13 chr1 85223532 85223621 -157440732 + MIR SINE MIR 36 127 -81 188 329 139 29 chr1 85223672 85223809 -157440544 - L2 LINE L2 -5 3267 3116 1490 220 108 26 chr1 85224007 85224461 -157439892 + LTR16C LTR ERVL 1 491 0 288 222 65 56 chr1 85224625 85224733 -157439620 + L2 LINE L2 2552 2660 -654 312 337 11 0 chr1 85224796 85224891 -157439462 - MER91B DNA MER1_type -3 187 92 352 246 32 87 chr1 85224911 85225037 -157439316 - MER91B DNA MER1_type -60 130 12 924 59 8 0 chr1 85225332 85225451 -157438902 + L1PA11 LINE L1 6045 6164 -10 492 328 50 5 chr1 85225598 85225799 -157438554 + MIR SINE MIR 19 228 -34 388 354 46 17 chr1 85225905 85226145 -157438208 - MIR SINE MIR -6 256 10 2365 42 28 0 chr1 85226418 85226703 -157437650 - AluY SINE Alu -18 293 1 1620 213 42 35 chr1 85226731 85227376 -157436977 + L1ME2 LINE L1 5449 6154 -10 1717 173 3 3 chr1 85227565 85227849 -157436504 - AluJb SINE Alu -28 284 1 934 232 36 0 chr1 85227902 85228096 -157436257 + MIR SINE MIR 60 260 -2 1161 242 196 41 chr1 85228368 85229250 -157435103 + L2 LINE L2 2088 3195 -118 1856 153 7 7 chr1 85229250 85229545 -157434808 - AluJb SINE Alu -17 295 1 1161 242 196 41 chr1 85229545 85229686 -157434667 + L2 LINE L2 3195 3313 0 214 310 71 44 chr1 85229801 85229914 -157434439 - MIR SINE MIR -146 116 1 539 298 144 0 chr1 85229926 85230107 -157434246 - MIR SINE MIR -39 223 17 184 171 0 122 chr1 85231092 85231133 -157433220 + L2 LINE L2 3222 3257 -15 278 286 125 18 chr1 85231235 85231347 -157433006 + L2 LINE L2 3149 3272 0 25 31 0 0 chr1 85232875 85232907 -157431446 + AT_rich Low_complexity Low_complexity 1 32 0 197 329 13 25 chr1 85234027 85234106 -157430247 - L2 LINE L2 -173 3099 3022 189 0 0 0 chr1 85234164 85234185 -157430168 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 464 0 18 0 chr1 85236180 85236236 -157428117 + (CA)n Simple_repeat Simple_repeat 2 58 0 1104 306 67 21 chr1 85237189 85237620 -157426733 + L2 LINE L2 2862 3312 -1 224 395 12 0 chr1 85237804 85237890 -157426463 + MER5A DNA MER1_type 103 189 0 2831 118 20 9 chr1 85238496 85238935 -157425418 - MLT2A1 LTR ERVL 0 444 1 2120 55 10 0 chr1 85238935 85239225 -157425128 - HERVL-A1 LTR ERVL 0 5654 5362 2052 172 6 5 chr1 85241509 85241900 -157422453 - L1MB4 LINE L1 -117 6063 5670 21 71 0 0 chr1 85242079 85242121 -157422232 + AT_rich Low_complexity Low_complexity 1 42 0 316 238 63 0 chr1 85242261 85242387 -157421966 - L1MEc LINE L1 -3775 2440 2307 410 183 0 0 chr1 85242387 85242447 -157421906 - MER115 DNA AcHobo 0 693 634 * 1182 251 47 0 chr1 85242446 85242789 -157421564 - Zaphod DNA AcHobo -2679 1352 994 934 253 101 12 chr1 85242809 85243066 -157421287 - Zaphod DNA AcHobo -3701 330 51 554 239 145 13 chr1 85243066 85243225 -157421128 - MER5A DNA MER1_type -1 188 9 240 345 0 0 chr1 85243233 85243291 -157421062 - Zaphod DNA AcHobo -3972 59 2 304 318 92 76 chr1 85243345 85243640 -157420713 - L1MEc LINE L1 -4096 2300 2011 2253 109 22 5 chr1 85243640 85244008 -157420345 - L1MA8 LINE L1 -1 6290 5917 304 318 92 76 chr1 85244008 85244367 -157419986 - L1MEc LINE L1 -4385 2011 1636 878 283 100 66 chr1 85244512 85245446 -157418907 - L1MEc LINE L1 -5029 1176 212 21 36 0 0 chr1 85245549 85245577 -157418776 + AT_rich Low_complexity Low_complexity 1 28 0 2453 184 42 21 chr1 85245914 85246759 -157417594 - L1MB4 LINE L1 -488 5690 4836 562 308 54 14 chr1 85248266 85248487 -157415866 + MIR SINE MIR 31 260 -2 2190 99 0 0 chr1 85248498 85248823 -157415530 - AluSg SINE Alu 0 325 1 2627 86 103 5 chr1 85249677 85250085 -157414268 - LTR7 LTR ERV1 -2 448 1 2391 89 45 16 chr1 85250085 85250466 -157413887 - HERVH LTR ERV1 0 7713 7322 4217 195 35 39 chr1 85250824 85252769 -157411584 + L1MB8 LINE L1 4233 6163 -15 2316 146 62 0 chr1 85253068 85253453 -157410900 - MSTA LTR MaLR -19 409 1 183 128 0 51 chr1 85253458 85253497 -157410856 + MIR SINE MIR 166 202 -60 470 219 92 8 chr1 85253504 85253623 -157410730 - MIR SINE MIR -10 252 124 2276 112 0 0 chr1 85253627 85253939 -157410414 + AluSq SINE Alu 1 312 -1 2581 143 19 21 chr1 85255108 85255535 -157408818 - MSTB LTR MaLR 0 426 1 22 35 0 0 chr1 85255888 85255917 -157408436 + AT_rich Low_complexity Low_complexity 1 29 0 550 314 102 38 chr1 85256543 85257043 -157407310 - L1ME4a LINE L1 -98 6023 5492 265 241 160 28 chr1 85257151 85257363 -157406990 - L1ME4a LINE L1 -751 5395 5156 23 54 0 0 chr1 85257474 85257511 -157406842 + AT_rich Low_complexity Low_complexity 1 37 0 242 324 176 0 chr1 85259259 85259361 -157404992 - L2 LINE L2 -5 3267 3148 1527 210 7 0 chr1 85259479 85259774 -157404579 + AluJo SINE Alu 3 299 -13 716 187 77 10 chr1 85259836 85260045 -157404308 + MER33 DNA MER1_type 6 228 -96 857 164 8 0 chr1 85260047 85260181 -157404172 + AluJb SINE Alu 1 135 -177 785 289 45 12 chr1 85260296 85260542 -157403811 + MIR SINE MIR 3 256 -6 1622 227 115 31 chr1 85261095 85261642 -157402711 + MLT1E LTR MaLR 1 593 0 438 300 189 14 chr1 85261918 85262278 -157402075 - L2 LINE L2 -1027 2287 1865 2899 82 12 2 chr1 85262450 85262854 -157401499 - HERVH LTR ERV1 -7305 408 1 2718 78 95 5 chr1 85262856 85263267 -157401086 - LTR7 LTR ERV1 -2 448 1 913 222 29 0 chr1 85264996 85265239 -157399114 + L1ME3A LINE L1 4233 4482 -1664 1447 229 30 44 chr1 85265339 85265485 -157398868 + L1ME3A LINE L1 5741 5888 -282 2018 137 10 0 chr1 85265485 85265777 -157398576 + AluSx SINE Alu 4 298 -14 1447 229 30 44 chr1 85265777 85266066 -157398287 + L1ME3A LINE L1 5888 6170 0 321 327 117 57 chr1 85267684 85268246 -157396107 + L2 LINE L2 2239 2834 -480 2216 157 3 16 chr1 85269090 85269460 -157394893 - MLT1A1 LTR MaLR 0 365 1 435 308 8 0 chr1 85269663 85269780 -157394573 + L2 LINE L2 3196 3313 0 272 391 73 17 chr1 85270019 85270198 -157394155 + L2 LINE L2 3077 3265 -7 363 262 7 69 chr1 85270262 85270407 -157393946 + MIR SINE MIR 101 236 -26 21010 35 10 0 chr1 85272049 85274654 -157389699 - L1PA3 LINE L1 -2161 3985 1354 11477 27 2 1 chr1 85274655 85276680 -157387673 + L1PA3 LINE L1 4014 6041 -114 3401 118 4 31 chr1 85276783 85277324 -157387029 + L1PA14 LINE L1 5621 6146 -15 292 253 79 113 chr1 85277354 85277734 -157386619 - L1M4 LINE L1 -1681 4465 4099 338 255 106 0 chr1 85277746 85277840 -157386513 - U6 snRNA snRNA 0 107 4 195 114 0 0 chr1 85278222 85278257 -157386096 + (TA)n Simple_repeat Simple_repeat 1 35 0 608 284 14 32 chr1 85279772 85279990 -157384363 - L2 LINE L2 0 3313 3100 239 328 52 17 chr1 85280264 85280380 -157383973 - MIR SINE MIR -60 202 83 414 294 99 32 chr1 85281347 85281568 -157382785 - MLT1I LTR MaLR -76 333 98 570 280 103 10 chr1 85281917 85282226 -157382127 - MLT1D LTR MaLR 0 505 276 185 350 62 56 chr1 85282272 85282432 -157381921 - MIR SINE MIR -13 249 89 314 318 32 32 chr1 85283209 85283335 -157381018 - L2 LINE L2 -8 3305 3180 271 306 198 0 chr1 85283454 85283565 -157380788 - MIR SINE MIR -4 258 126 182 315 14 27 chr1 85283574 85283647 -157380706 - L2 LINE L2 -180 3092 3021 1369 140 0 0 chr1 85284065 85284272 -157380081 + AluSg/x SINE Alu 101 307 -3 268 326 28 22 chr1 85284284 85284465 -157379888 - L1MC/D LINE L1 -1997 5811 5630 311 132 0 0 chr1 85285463 85285516 -157378837 + AluSc SINE Alu 247 299 0 915 201 56 105 chr1 85285593 85286241 -157378112 - MER4B-int LTR ERV1 -4322 2436 1658 2405 61 0 3 chr1 85286242 85286552 -157377801 - AluY SINE Alu 0 311 3 1846 102 0 4 chr1 85286705 85286950 -157377403 - AluSc SINE Alu -63 246 3 615 171 0 55 chr1 85287164 85287310 -157377043 + MER57-int LTR ERV1 705 842 -6695 296 235 39 69 chr1 85287395 85287497 -157376856 + MER57-int LTR ERV1 841 3437 -4100 32 26 0 0 chr1 85287642 85287681 -157376672 + AT_rich Low_complexity Low_complexity 1 39 0 1407 144 9 9 chr1 85287683 85287912 -157376441 + AluSx SINE Alu 1 229 -83 3488 206 26 31 chr1 85288014 85289174 -157375179 + L1MA7 LINE L1 4927 6078 -213 1326 69 10 25 chr1 85289276 85289478 -157374875 + HERVH LTR ERV1 7515 7713 0 2531 98 103 5 chr1 85289478 85289886 -157374467 + LTR7 LTR ERV1 1 448 -2 1719 164 0 10 chr1 85290740 85291032 -157373321 + AluSg SINE Alu 1 289 -21 388 309 50 41 chr1 85291088 85291308 -157373045 - MIR SINE MIR -10 252 31 402 302 16 16 chr1 85291508 85291637 -157372716 + MER94 DNA DNA 6 134 0 461 278 120 26 chr1 85292592 85292783 -157371570 - MIR SINE MIR 0 262 54 199 335 93 37 chr1 85293110 85293271 -157371082 - L2 LINE L2 -292 2980 2811 297 309 95 32 chr1 85293949 85293981 -157370372 - MIR SINE MIR -78 184 155 1773 177 53 0 chr1 85293981 85294320 -157370033 - MER46B DNA MER2_type -4 232 1 297 309 95 32 chr1 85294320 85294413 -157369940 - MIR SINE MIR -107 155 51 184 140 18 18 chr1 85294462 85294519 -157369834 + A-rich Low_complexity Low_complexity 1 57 0 537 308 21 33 chr1 85296031 85296272 -157368081 - MIR SINE MIR -53 155 16 386 273 94 48 chr1 85296573 85296747 -157367606 - MIR3 SINE MIR -10 198 19 463 260 226 63 chr1 85296824 85297301 -157367052 + HAL1b LINE L1 332 886 -462 2555 106 0 8 chr1 85297441 85297808 -157366545 - THE1B LTR MaLR 0 364 1 22 56 0 0 chr1 85297864 85297900 -157366453 + AT_rich Low_complexity Low_complexity 1 36 0 9309 37 7 1 chr1 85298143 85299314 -157365039 + L1P LINE L1 2420 3597 -2549 512 254 86 74 chr1 85299424 85299680 -157364673 + MSTB2 LTR MaLR 195 453 -4 820 265 81 66 chr1 85299686 85300018 -157364335 - L1MCb LINE L1 -5765 280 5 611 361 95 27 chr1 85300020 85300596 -157363757 - L2 LINE L2 -201 3071 2464 437 216 72 12 chr1 85301260 85301427 -157362926 + LTR50 LTR ERVL 3 177 -596 24 0 0 0 chr1 85301883 85301907 -157362446 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr1 85302156 85302191 -157362162 + AT_rich Low_complexity Low_complexity 1 35 0 585 296 138 33 chr1 85303195 85304129 -157360224 - L1MEc LINE L1 -3935 2461 1430 850 198 0 17 chr1 85304768 85304945 -157359408 - L1PB1 LINE L1 0 6151 5978 253 228 0 0 chr1 85305080 85305137 -157359216 + L1MA10 LINE L1 5317 5373 -986 8151 78 10 10 chr1 85305159 85307108 -157357245 - L1PA7 LINE L1 -2 6152 4220 5019 87 9 1 chr1 85307109 85307803 -157356550 + L1PA7 LINE L1 3511 4209 -1937 2556 128 12 0 chr1 85308380 85308795 -157355558 + L1MA1 LINE L1 5883 6302 0 3081 175 61 17 chr1 85308814 85309467 -157354886 + L1MA10 LINE L1 5652 6333 -1 228 337 58 0 chr1 85309558 85309644 -157354709 + L1MCc LINE L1 348 438 -5985 1351 25 0 6 chr1 85310053 85310210 -157354143 - AluY SINE Alu -154 157 2 257 238 48 29 chr1 85310237 85310342 -157354011 - MER65A-int LTR ERV1 -6498 1622 1516 2819 251 60 43 chr1 85310370 85311537 -157352816 - MER65A-int LTR ERV1 -3624 1247 61 892 51 103 0 chr1 85311539 85311656 -157352697 + MER9 LTR ERVK 1 129 -382 * 1641 207 11 11 chr1 85311654 85312011 -157352342 - MER65A LTR ERV1 -27 418 62 745 167 8 0 chr1 85312012 85312132 -157352221 + FLAM_A SINE Alu 1 121 -21 3633 229 22 15 chr1 85312145 85313451 -157350902 + L1M3 LINE L1 4360 5667 -501 * 5173 66 18 0 chr1 85313448 85314196 -157350157 - L1PA7 LINE L1 -210 5944 5185 1340 97 0 0 chr1 85314196 85314382 -157349971 + L1PA7 LINE L1 5962 6147 -7 26 82 0 0 chr1 85314898 85314959 -157349394 + AT_rich Low_complexity Low_complexity 1 61 0 561 308 69 12 chr1 85314964 85315211 -157349142 - MIR SINE MIR 0 262 2 225 219 254 18 chr1 85315704 85315818 -157348535 - MER5A DNA MER1_type -2 187 47 21 0 0 0 chr1 85317407 85317428 -157346925 + AT_rich Low_complexity Low_complexity 1 21 0 204 277 0 0 chr1 85318111 85318194 -157346159 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 26 0 0 0 chr1 85318251 85318277 -157346076 + AT_rich Low_complexity Low_complexity 1 26 0 284 303 76 95 chr1 85319843 85320107 -157344246 - MIR SINE MIR -3 259 1 248 261 11 0 chr1 85320249 85320341 -157344012 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 2578 196 15 67 chr1 85320387 85321045 -157343308 - L1MB5 LINE L1 -7 6167 5544 1821 253 50 14 chr1 85321051 85321706 -157342647 - L1MB5 LINE L1 -743 5403 4744 343 322 40 66 chr1 85323992 85324265 -157340088 + L1MDa LINE L1 19 284 -6256 705 82 0 0 chr1 85324294 85324391 -157339962 + (GGAA)n Simple_repeat Simple_repeat 2 98 0 206 105 26 0 chr1 85324510 85324548 -157339805 + GA-rich Low_complexity Low_complexity 3 41 0 346 267 0 59 chr1 85325082 85325217 -157339136 - L1ME2 LINE L1 -73 6091 5965 280 322 107 27 chr1 85325211 85325577 -157338776 - L1ME LINE L1 -4885 1499 1105 * 690 306 90 29 chr1 85325564 85326202 -157338151 - L1ME LINE L1 -5113 1259 585 1981 181 67 20 chr1 85326312 85326716 -157337637 + MSTC LTR MaLR 1 423 -5 350 302 55 25 chr1 85326813 85327048 -157337305 - L1MEc LINE L1 -4762 2360 2119 1828 187 20 33 chr1 85327121 85327511 -157336842 + MLT1B LTR MaLR 4 388 -2 3054 218 66 25 chr1 85327673 85328913 -157335440 - L1MB8 LINE L1 -12 6166 4869 263 316 70 29 chr1 85329027 85329299 -157335054 - L1MEc LINE L1 -4928 1495 1213 982 270 30 21 chr1 85329904 85330241 -157334112 - L1ME1 LINE L1 -21 6145 5806 728 278 63 4 chr1 85330240 85330495 -157333858 - L1MEc LINE L1 -5948 475 206 * 251 241 13 25 chr1 85330503 85330582 -157333771 - L1MEc LINE L1 -6327 96 19 24 67 0 0 chr1 85330863 85330908 -157333445 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr1 85331011 85331039 -157333314 + AT_rich Low_complexity Low_complexity 1 28 0 1535 284 20 36 chr1 85331040 85331589 -157332764 - MLT1F LTR MaLR 0 542 3 332 211 0 53 chr1 85332383 85332459 -157331894 - MER45B DNA AcHobo -427 613 542 1049 236 5 0 chr1 85332463 85332666 -157331687 - MER45B DNA AcHobo -833 207 4 2013 141 0 0 chr1 85332918 85333209 -157331144 + AluSx SINE Alu 11 301 -11 270 56 0 0 chr1 85333271 85333307 -157331046 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 264 30 0 0 chr1 85333540 85333573 -157330780 + (TG)n Simple_repeat Simple_repeat 2 34 0 293 111 0 22 chr1 85333744 85333789 -157330564 + L1P5 LINE L1 5680 5723 -433 * 927 187 7 93 chr1 85333787 85333912 -157330441 + L1M4 LINE L1 4101 4192 -1954 2077 120 0 0 chr1 85333912 85334230 -157330123 - AluSx SINE Alu 0 318 1 927 187 7 93 chr1 85334230 85334381 -157329972 + L1M4 LINE L1 4192 4354 -1792 3177 137 13 109 chr1 85334513 85334913 -157329440 - L1PB3 LINE L1 -9 6145 5837 347 89 18 0 chr1 85334913 85334969 -157329384 + (CA)n Simple_repeat Simple_repeat 2 58 0 3177 137 13 109 chr1 85334969 85335253 -157329100 - L1PB3 LINE L1 -317 5837 5527 6216 194 108 37 chr1 85335288 85336800 -157327553 + MER52A LTR ERV1 61 1755 0 1165 163 37 0 chr1 85336801 85337127 -157327226 - L1PB3 LINE L1 -715 5439 5100 1870 204 16 18 chr1 85337133 85337569 -157326784 - L1PB3 LINE L1 -2341 3805 3371 607 77 0 0 chr1 85337571 85337649 -157326704 - AluSc SINE Alu -38 271 194 334 259 54 27 chr1 85338255 85338402 -157325951 + L1M4 LINE L1 4557 4707 -1439 313 291 106 17 chr1 85338488 85338725 -157325628 + L1M4 LINE L1 4943 5200 -946 24 0 0 0 chr1 85339044 85339068 -157325285 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 85340480 85340501 -157323852 + AT_rich Low_complexity Low_complexity 1 21 0 3020 154 24 46 chr1 85341002 85341443 -157322910 - L1P4 LINE L1 -371 5795 5378 1545 212 3 7 chr1 85341443 85341736 -157322617 - AluSx SINE Alu -17 295 4 3020 154 24 46 chr1 85341736 85342196 -157322157 - L1P4 LINE L1 -788 5378 4910 275 213 0 0 chr1 85342197 85342258 -157322095 + L1P LINE L1 4501 4561 -1585 1155 202 0 4 chr1 85342260 85342503 -157321850 + L1 LINE L1 4655 4896 -1250 661 302 83 0 chr1 85342687 85342975 -157321378 - L1M4 LINE L1 -1312 4834 4523 443 297 45 22 chr1 85342978 85343200 -157321153 - L1M4 LINE L1 -1984 4162 3936 195 184 0 0 chr1 85343200 85343238 -157321115 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 237 35 35 chr1 85343238 85343352 -157321001 + L1MC4 LINE L1 6588 6701 -1341 4031 182 36 46 chr1 85343352 85343684 -157320669 - L1MA9 LINE L1 -167 6214 5880 216 0 0 0 chr1 85343684 85343708 -157320645 + (TG)n Simple_repeat Simple_repeat 2 25 0 4031 182 36 46 chr1 85343708 85345225 -157319128 - L1MA9 LINE L1 -501 5880 4390 318 217 0 0 chr1 85345336 85345405 -157318948 - L1MA9 LINE L1 -1985 4230 4162 1493 249 45 57 chr1 85345420 85345797 -157318556 - L1MA9 LINE L1 -3419 2796 2463 300 27 0 0 chr1 85345797 85345834 -157318519 + (CA)n Simple_repeat Simple_repeat 2 38 0 1493 249 45 57 chr1 85345834 85346168 -157318185 - L1MA9 LINE L1 -3752 2463 2126 1477 205 17 7 chr1 85346189 85346487 -157317866 - AluJb SINE Alu -8 304 4 1107 261 19 14 chr1 85346531 85346914 -157317439 + L1M4 LINE L1 1121 1759 -4554 297 54 54 0 chr1 85346981 85347037 -157317316 + (TA)n Simple_repeat Simple_repeat 2 60 0 36 40 0 0 chr1 85347082 85347132 -157317221 + AT_rich Low_complexity Low_complexity 1 50 0 1180 298 74 29 chr1 85347316 85347896 -157316457 + L1M4 LINE L1 3573 4178 -2204 1875 133 38 0 chr1 85347917 85348210 -157316143 + AluSx SINE Alu 1 304 -8 462 275 42 47 chr1 85348210 85348403 -157315950 + L1MD2 LINE L1 18 209 -6331 1706 218 64 8 chr1 85349153 85349625 -157314728 + L1MD2 LINE L1 3914 4411 -2129 407 217 127 18 chr1 85349639 85349805 -157314548 + L1MD2 LINE L1 4589 4772 -1768 4834 227 52 35 chr1 85349886 85352602 -157311751 + L1MC1 LINE L1 3567 6332 -1 1965 224 19 67 chr1 85352605 85353052 -157311301 + L1MD2 LINE L1 6112 6579 -174 1879 144 0 23 chr1 85353052 85353357 -157310996 + AluSx SINE Alu 1 298 -14 1965 224 19 67 chr1 85353357 85353385 -157310968 + L1MD2 LINE L1 6579 6607 -146 305 62 21 0 chr1 85353385 85353433 -157310920 + (CA)n Simple_repeat Simple_repeat 2 50 0 1965 224 19 67 chr1 85353433 85353627 -157310726 + L1MD2 LINE L1 6607 6750 -3 25 31 0 0 chr1 85354559 85354591 -157309762 + AT_rich Low_complexity Low_complexity 1 32 0 368 275 113 50 chr1 85354759 85354999 -157309354 + L1ME3A LINE L1 5914 6168 -2 210 231 0 0 chr1 85355896 85355948 -157308405 + (CA)n Simple_repeat Simple_repeat 1 52 0 180 372 39 0 chr1 85356273 85356351 -157308002 + L2 LINE L2 3229 3309 -4 25 0 0 0 chr1 85356390 85356415 -157307938 + AT_rich Low_complexity Low_complexity 1 25 0 272 194 57 120 chr1 85356815 85356990 -157307363 - L1ME4a LINE L1 -17 6104 5941 40 21 0 0 chr1 85357078 85357125 -157307228 + AT_rich Low_complexity Low_complexity 1 47 0 1350 214 90 0 chr1 85357428 85357694 -157306659 + AluJo SINE Alu 1 290 -22 6580 69 12 0 chr1 85359575 85360704 -157303649 - L1PA8 LINE L1 -1 6171 5068 306 50 0 0 chr1 85360751 85360791 -157303562 + (TA)n Simple_repeat Simple_repeat 1 40 0 392 161 0 0 chr1 85361940 85362002 -157302351 + MER93b LTR ERV1 12 73 -300 * 417 176 0 0 chr1 85361999 85362073 -157302280 - MLT1A2 LTR MaLR -295 79 6 241 371 0 21 chr1 85363360 85363457 -157300896 + MIR SINE MIR 38 132 -130 2224 97 7 3 chr1 85363476 85363774 -157300579 - AluSc SINE Alu -10 299 1 2001 241 85 20 chr1 85364035 85364823 -157299530 - L1M4 LINE L1 -2878 3766 2928 2096 258 17 13 chr1 85364841 85365365 -157298988 + L1PA15 LINE L1 1281 1806 -4981 775 165 88 18 chr1 85365378 85365548 -157298805 + L1PA13 LINE L1 5982 6163 0 5182 253 19 12 chr1 85365548 85367456 -157296897 + L1PA15 LINE L1 1819 3743 -3054 4941 151 14 25 chr1 85367461 85368982 -157295371 + L1PA15 LINE L1 4882 6378 -438 2646 125 79 0 chr1 85368982 85369361 -157294992 + MLT2A2 LTR ERVL 1 417 -36 420 118 0 0 chr1 85369361 85369429 -157294924 + (TA)n Simple_repeat Simple_repeat 2 69 0 2646 125 79 0 chr1 85369429 85369466 -157294887 + MLT2A2 LTR ERVL 417 450 -3 4941 151 14 25 chr1 85369466 85369899 -157294454 + L1PA15 LINE L1 6378 6814 -2 682 226 48 61 chr1 85369945 85370287 -157294066 - L1M4 LINE L1 -3725 2919 2582 367 261 36 24 chr1 85370407 85370572 -157293781 - L1M4 LINE L1 -5327 1215 1049 3821 240 71 41 chr1 85370646 85372037 -157292316 - L1M4 LINE L1 -4848 1694 292 1799 168 30 3 chr1 85372145 85372449 -157291904 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 85372545 85372573 -157291780 + AT_rich Low_complexity Low_complexity 1 28 0 356 271 40 38 chr1 85372581 85373182 -157291171 - L1M4c LINE L1 -4235 2149 1456 8244 221 32 7 chr1 85373217 85375269 -157289084 + L1 LINE L1 2763 4866 -1280 1595 91 0 0 chr1 85375464 85375674 -157288679 - AluY SINE Alu -1 310 101 20020 31 4 0 chr1 85375674 85378852 -157285501 - L1PA4 LINE L1 -24 6131 2945 293 348 70 18 chr1 85379411 85379638 -157284715 - MLT1L LTR MaLR -18 597 359 1253 228 10 21 chr1 85381704 85381994 -157282359 + AluJo SINE Alu 1 287 -25 201 195 0 0 chr1 85382017 85382058 -157282295 + (TA)n Simple_repeat Simple_repeat 1 41 0 26 30 0 0 chr1 85384488 85384521 -157279832 + AT_rich Low_complexity Low_complexity 1 33 0 1898 191 50 35 chr1 85385271 85385813 -157278540 + MLT2A2 LTR ERVL 1 554 0 360 310 60 67 chr1 85386503 85387248 -157277105 + MER110-int LTR ERV1 2243 2982 -1665 1467 244 11 22 chr1 85388071 85388428 -157275925 - MLT1A1 LTR MaLR 0 365 13 24 77 0 0 chr1 85389196 85389248 -157275105 + AT_rich Low_complexity Low_complexity 1 52 0 795 283 71 30 chr1 85389488 85389884 -157274469 + MER92A LTR ERV1 1 412 0 681 166 225 0 chr1 85389886 85390055 -157274298 + MLT1E1 LTR MaLR 446 652 -2 21 0 0 0 chr1 85390359 85390380 -157273973 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 85390435 85390456 -157273897 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 85390958 85390979 -157273374 + AT_rich Low_complexity Low_complexity 1 21 0 4496 23 0 0 chr1 85391366 85391893 -157272460 - L1PA3 LINE L1 -349 5806 5280 2704 34 0 0 chr1 85391893 85392209 -157272144 + L1PA3 LINE L1 5836 6155 0 306 274 84 73 chr1 85392209 85392345 -157272008 + HAL1 LINE L1 907 1040 -1467 2249 57 0 27 chr1 85392345 85392644 -157271709 - AluY SINE Alu -15 296 6 306 274 84 73 chr1 85392644 85392781 -157271572 + HAL1 LINE L1 1040 1183 -1324 3629 137 23 2 chr1 85392895 85393626 -157270727 + L1PB1 LINE L1 5039 5791 -360 2656 88 0 31 chr1 85393655 85394043 -157270310 + L1PB1 LINE L1 5776 6151 0 301 233 38 25 chr1 85394071 85394230 -157270123 + L1MEc LINE L1 2156 2316 -4080 1413 274 147 27 chr1 85394290 85394815 -157269538 - MLT1E LTR MaLR -3 590 3 2975 256 69 35 chr1 85394830 85395530 -157268823 + L1MEc LINE L1 2345 3020 -3195 2110 113 0 3 chr1 85395530 85395839 -157268514 + AluSg SINE Alu 1 308 -2 2975 256 69 35 chr1 85395839 85396761 -157267592 + L1MEc LINE L1 3020 4022 -2193 761 271 139 9 chr1 85396770 85397223 -157267130 + L1MEc LINE L1 4234 4745 -1470 317 243 72 0 chr1 85397359 85397470 -157266883 - L1M4 LINE L1 -6421 121 3 448 168 20 10 chr1 85398574 85398675 -157265678 + CT-rich Low_complexity Low_complexity 3 104 0 2027 196 62 35 chr1 85398697 85399161 -157265192 - MER101B LTR ERV1 0 570 94 21 36 0 0 chr1 85400024 85400052 -157264301 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 85400799 85400828 -157263525 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr1 85400945 85400981 -157263372 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr1 85401214 85401257 -157263096 + AT_rich Low_complexity Low_complexity 1 43 0 467 252 236 8 chr1 85402135 85402377 -157261976 - L1M4 LINE L1 -2297 3849 3553 234 152 0 0 chr1 85402408 85402456 -157261897 - Alu SINE Alu -11 122 85 753 203 61 6 chr1 85402456 85402619 -157261734 - AluJo SINE Alu -130 182 11 274 281 140 22 chr1 85402659 85403243 -157261110 - L1M4 LINE L1 -2678 3468 2816 421 197 0 0 chr1 85403346 85403446 -157260907 - L1ME LINE L1 -348 5814 5715 571 214 58 0 chr1 85403452 85403606 -157260747 - L1MA8 LINE L1 -2 6289 6127 * 2485 185 17 35 chr1 85403603 85403683 -157260670 + L1MA8 LINE L1 5590 5670 -621 1922 98 14 44 chr1 85403683 85403980 -157260373 + AluSx SINE Alu 1 288 -24 2485 185 17 35 chr1 85403980 85404439 -157259914 + L1MA8 LINE L1 5670 6119 -172 231 170 0 0 chr1 85404522 85404569 -157259784 + (TG)n Simple_repeat Simple_repeat 2 48 0 2940 168 58 5 chr1 85404634 85405240 -157259113 - L1MA4 LINE L1 -5 6295 5658 362 222 65 9 chr1 85405244 85405352 -157259001 - L1MA4 LINE L1 -1754 4392 4279 * 5801 195 37 17 chr1 85405325 85406637 -157257716 - L1 LINE L1 -1475 4853 3515 4077 127 6 138 chr1 85406638 85407553 -157256800 + LTR25 LTR ERV1 1 794 0 4246 245 68 26 chr1 85407570 85410329 -157254024 - L1 LINE L1 -2812 3516 539 238 200 0 40 chr1 85410912 85410962 -157253391 - L1 LINE L1 -6092 167 120 183 347 61 95 chr1 85411316 85411578 -157252775 + L2 LINE L2 2897 3149 -123 275 222 48 24 chr1 85411605 85411772 -157252581 + (TA)n Simple_repeat Simple_repeat 1 171 0 24 53 0 0 chr1 85411909 85411947 -157252406 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 85412595 85412618 -157251735 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr1 85412856 85412888 -157251465 + AT_rich Low_complexity Low_complexity 1 32 0 922 241 118 29 chr1 85413388 85413703 -157250650 - MER2 DNA MER2_type 0 344 2 24 0 0 0 chr1 85413943 85413967 -157250386 + AT_rich Low_complexity Low_complexity 1 24 0 187 258 19 0 chr1 85414269 85414331 -157250022 + MIR SINE MIR 46 110 -98 1041 67 0 0 chr1 85414644 85414778 -157249575 + L1PA7 LINE L1 6019 6152 -2 21 89 0 0 chr1 85414809 85414865 -157249488 + AT_rich Low_complexity Low_complexity 1 56 0 2186 78 25 0 chr1 85415406 85415687 -157248666 - AluY SINE Alu -23 288 1 1482 211 21 27 chr1 85416565 85416897 -157247456 + MLT2C1 LTR ERVL 5 334 -63 717 192 3 3 chr1 85416900 85417220 -157247133 + (TA)n Simple_repeat Simple_repeat 1 320 0 2010 79 68 0 chr1 85418746 85419025 -157245328 + AluY SINE Alu 1 298 -13 703 130 0 0 chr1 85419222 85419322 -157245031 - AluS SINE Alu -213 100 1 32 0 0 0 chr1 85419377 85419409 -157244944 + AT_rich Low_complexity Low_complexity 1 32 0 220 200 36 0 chr1 85419438 85419493 -157244860 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 12684 201 61 42 chr1 85419625 85422860 -157241493 + L1MA3 LINE L1 11 3182 -4542 312 120 0 0 chr1 85422860 85422910 -157241443 + (TA)n Simple_repeat Simple_repeat 2 51 0 12684 201 61 42 chr1 85422910 85422933 -157241420 + L1MA3 LINE L1 3182 3203 -4521 11531 25 1 2 chr1 85422933 85425068 -157239285 - L1PA3 LINE L1 -2 6153 4021 12684 201 61 42 chr1 85425068 85425191 -157239162 + L1MA3 LINE L1 3203 3322 -4402 233 56 0 28 chr1 85425191 85425227 -157239126 + (TA)n Simple_repeat Simple_repeat 1 35 0 12684 201 61 42 chr1 85425227 85425440 -157238913 + L1MA3 LINE L1 3322 3529 -4195 180 0 0 0 chr1 85425440 85425460 -157238893 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 12684 201 61 42 chr1 85425460 85425544 -157238809 + L1MA3 LINE L1 3529 3610 -4114 207 0 0 0 chr1 85425544 85425567 -157238786 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 12684 201 61 42 chr1 85425567 85429430 -157234923 + L1MA3 LINE L1 3610 7724 0 210 379 57 24 chr1 85429978 85430189 -157234164 - MIR SINE MIR -4 258 41 262 296 0 0 chr1 85430619 85430690 -157233663 + L1M4b LINE L1 735 805 -6054 430 264 101 76 chr1 85431117 85431457 -157232896 + L1M4b LINE L1 1188 1549 -5306 2186 114 3 0 chr1 85431457 85431756 -157232597 + AluSg SINE Alu 1 300 -10 430 264 101 76 chr1 85431756 85431979 -157232374 + L1M4b LINE L1 1549 1765 -5090 4843 169 19 13 chr1 85431984 85433594 -157230759 + L1PA15 LINE L1 4552 6165 0 229 176 29 15 chr1 85433599 85433659 -157230694 + (TA)n Simple_repeat Simple_repeat 2 65 -5 189 0 0 0 chr1 85433659 85433680 -157230673 + (TG)n Simple_repeat Simple_repeat 2 22 0 229 176 29 15 chr1 85433680 85433687 -157230666 + (TA)n Simple_repeat Simple_repeat 65 70 0 1180 264 107 15 chr1 85433688 85434146 -157230207 - MLT1D LTR MaLR -3 502 3 1234 264 35 85 chr1 85434148 85434441 -157229912 + L1M4b LINE L1 1754 2060 -4899 2115 100 17 0 chr1 85434441 85434742 -157229611 - AluSc SINE Alu -3 306 1 1234 264 35 85 chr1 85434742 85435155 -157229198 + L1M4b LINE L1 2060 2425 -4534 212 253 165 101 chr1 85436894 85437052 -157227301 - L2 LINE L2 0 3313 3146 198 0 0 0 chr1 85437374 85437396 -157226957 + (A)n Simple_repeat Simple_repeat 1 22 0 183 80 0 0 chr1 85438401 85438426 -157225927 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 314 225 101 0 chr1 85439420 85439509 -157224844 - L2 LINE L2 -21 3292 3195 357 24 0 0 chr1 85440564 85440606 -157223747 + (TG)n Simple_repeat Simple_repeat 2 43 0 26 0 0 0 chr1 85442486 85442512 -157221841 + AT_rich Low_complexity Low_complexity 1 26 0 639 221 8 8 chr1 85443326 85443448 -157220905 - L2 LINE L2 -1 3271 3150 657 244 20 46 chr1 85443456 85443653 -157220700 + MIR SINE MIR 41 232 -30 202 256 0 0 chr1 85443875 85443918 -157220435 + MIR SINE MIR 220 262 0 445 248 93 16 chr1 85444133 85444262 -157220091 - MIR3 SINE MIR -25 183 45 1173 234 77 57 chr1 85445070 85445504 -157218849 + MLT1C LTR MaLR 15 467 0 295 347 24 16 chr1 85446095 85446219 -157218134 - L2 LINE L2 -1 3271 3147 758 255 100 0 chr1 85446745 85446945 -157217408 - MIR SINE MIR -41 221 2 242 209 119 15 chr1 85448116 85448183 -157216170 + L2 LINE L2 3182 3255 -58 222 37 0 0 chr1 85448212 85448239 -157216114 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 188 29 0 88 chr1 85448980 85449014 -157215339 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1721 144 13 46 chr1 85451067 85451372 -157212981 + AluJo SINE Alu 1 295 -17 278 285 81 8 chr1 85451600 85451723 -157212630 - MLT1I LTR MaLR -6 403 272 418 81 0 27 chr1 85452172 85452246 -157212107 + (GA)n Simple_repeat Simple_repeat 1 72 0 618 242 50 45 chr1 85453030 85453228 -157211125 + MIR3 SINE MIR 3 201 -7 281 244 104 67 chr1 85453729 85453864 -157210489 - MIR SINE MIR -65 143 3 231 286 33 44 chr1 85453982 85454073 -157210280 - MIR SINE MIR -94 168 79 1658 80 34 46 chr1 85454988 85455251 -157209102 + L1PA7 LINE L1 5887 6146 -8 2450 237 40 5 chr1 85455311 85455907 -157208446 + MER63C DNA MER1_type 72 688 -242 746 140 17 117 chr1 85455907 85456086 -157208267 + MLT1A2 LTR MaLR 4 164 -210 1242 129 23 23 chr1 85456088 85456305 -157208048 + L1MA5A LINE L1 6071 6287 -10 23 54 0 0 chr1 85456305 85456342 -157208011 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 85456368 85456389 -157207964 + AT_rich Low_complexity Low_complexity 1 21 0 3434 194 55 9 chr1 85456482 85457540 -157206813 - L1MD1 LINE L1 -250 5992 4880 489 178 186 0 chr1 85457543 85457661 -157206692 + MER63C DNA MER1_type 785 924 -6 2956 105 16 0 chr1 85457743 85458172 -157206181 + L1PA11 LINE L1 5739 6174 0 293 279 124 23 chr1 85458394 85458523 -157205830 + MIR SINE MIR 8 149 -113 558 261 67 15 chr1 85458543 85458738 -157205615 - L2 LINE L2 0 3313 3109 190 356 10 19 chr1 85458882 85458986 -157205367 + L3 LINE CR1 1472 1574 -3 309 288 0 0 chr1 85460008 85460081 -157204272 - MIR SINE MIR -162 100 28 24 0 0 0 chr1 85460602 85460626 -157203727 + AT_rich Low_complexity Low_complexity 1 24 0 1816 226 54 9 chr1 85460707 85461149 -157203204 - MLT1C LTR MaLR 0 467 6 1386 271 44 38 chr1 85461152 85461213 -157203140 - L1MC4 LINE L1 -72 7970 7911 192 77 0 0 chr1 85461213 85461239 -157203114 + (CCCA)n Simple_repeat Simple_repeat 2 27 0 1386 271 44 38 chr1 85461239 85461808 -157202545 - L1MC4 LINE L1 -131 7911 7336 308 169 0 34 chr1 85462297 85462356 -157201997 - U1 snRNA snRNA -108 57 1 7526 91 5 21 chr1 85463740 85464826 -157199527 - MER11C LTR ERVK 0 1071 4 882 332 23 54 chr1 85465032 85465616 -157198737 + L2 LINE L2 2709 3272 0 2059 206 19 69 chr1 85467308 85467831 -157196522 + MLT1D LTR MaLR 1 497 -8 406 341 88 29 chr1 85467842 85468047 -157196306 + L2 LINE L2 2579 2795 -519 27655 65 9 1 chr1 85468227 85472663 -157191690 - L1PA6 LINE L1 -1 6153 1685 9549 148 16 32 chr1 85472670 85474368 -157189985 + L1PA6 LINE L1 11 1680 -4466 269 247 108 0 chr1 85474364 85474457 -157189896 - L1ME3A LINE L1 -257 5913 5811 * 282 304 22 22 chr1 85474586 85474724 -157189629 - L1M4 LINE L1 -1978 4168 4031 265 176 0 59 chr1 85475063 85475148 -157189205 - L1M4 LINE L1 -2192 3954 3875 355 299 45 8 chr1 85475151 85475285 -157189068 - L1MEc LINE L1 -4171 2225 2087 868 154 166 0 chr1 85475285 85475460 -157188893 - MER47A DNA MER2_type -136 230 27 2675 88 6 8 chr1 85475654 85476019 -157188334 - THE1B LTR MaLR 0 364 1 1004 268 116 9 chr1 85476056 85476608 -157187745 - L1MC4a LINE L1 -1897 5911 5301 1568 229 52 22 chr1 85476810 85477034 -157187319 - MLT2D LTR ERVL -1 413 170 288 0 0 0 chr1 85477034 85477066 -157187287 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1568 229 52 22 chr1 85477066 85477242 -157187111 - MLT2D LTR ERVL -244 170 1 21 57 0 0 chr1 85477562 85477597 -157186756 + AT_rich Low_complexity Low_complexity 1 35 0 609 293 153 43 chr1 85477694 85477825 -157186528 - L1MC4a LINE L1 -1532 4614 4499 1566 177 51 14 chr1 85477825 85478119 -157186234 - AluJo SINE Alu -7 305 1 609 293 153 43 chr1 85478119 85478387 -157185966 - L1MC4a LINE L1 -1647 4499 4262 2349 105 0 13 chr1 85478387 85478702 -157185651 - AluSq SINE Alu 0 313 3 609 293 153 43 chr1 85478702 85479061 -157185292 - L1MC4a LINE L1 -1884 4262 3772 228 287 0 11 chr1 85479267 85479354 -157184999 + L1ME3A LINE L1 5877 5962 -208 2070 128 3 19 chr1 85479426 85479739 -157184614 + AluSx SINE Alu 1 308 -4 429 338 100 42 chr1 85479940 85480481 -157183872 - L1MC4a LINE L1 -2391 3755 3184 538 224 179 0 chr1 85480513 85480647 -157183706 - MER5A DNA MER1_type -6 183 26 5168 164 20 15 chr1 85480794 85481983 -157182370 - L1MA6 LINE L1 0 6300 5109 * 6811 172 12 14 chr1 85481982 85483262 -157181091 + L1 LINE L1 3726 5005 -1141 1944 138 0 49 chr1 85483262 85483567 -157180786 + AluSx SINE Alu 1 290 -22 6811 172 12 14 chr1 85483567 85483690 -157180663 + L1 LINE L1 5005 5127 -1019 40 21 0 0 chr1 85483690 85483737 -157180616 + AT_rich Low_complexity Low_complexity 1 47 0 394 313 101 61 chr1 85483750 85484226 -157180127 - L1MC4a LINE L1 -3112 3034 2540 1484 205 16 8 chr1 85484234 85484614 -157179739 + L1MB8 LINE L1 4886 5268 -878 35476 89 7 9 chr1 85484641 85490797 -157173556 + L1PA6 LINE L1 11 6153 -1 2746 176 13 7 chr1 85490836 85491393 -157172960 + L1MB8 LINE L1 5272 5831 -347 * 3077 108 44 0 chr1 85491389 85491909 -157172444 - L1PBa LINE L1 -4459 2404 1862 22 70 0 0 chr1 85492027 85492070 -157172283 + AT_rich Low_complexity Low_complexity 1 43 0 465 269 85 20 chr1 85492573 85492774 -157171579 - HAL1b LINE L1 -843 505 292 589 261 178 62 chr1 85494358 85494791 -157169562 - LTR33 LTR ERVL -29 492 10 318 345 61 42 chr1 85495103 85495433 -157168920 + L2 LINE L2 2044 2379 -935 246 32 0 0 chr1 85495457 85495488 -157168865 + (CA)n Simple_repeat Simple_repeat 1 31 0 1756 168 3 3 chr1 85496117 85496408 -157167945 - AluJb SINE Alu -17 295 5 442 303 95 51 chr1 85496715 85497009 -157167344 + L2 LINE L2 2965 3271 -1 1924 160 0 0 chr1 85498733 85499015 -157165338 + AluJo SINE Alu 1 282 -30 215 167 21 21 chr1 85499154 85499202 -157165151 + CT-rich Low_complexity Low_complexity 1 48 0 40 49 0 0 chr1 85499273 85499334 -157165019 + AT_rich Low_complexity Low_complexity 1 61 0 335 293 84 30 chr1 85499386 85499553 -157164800 + L2 LINE L2 3135 3310 -3 430 320 0 25 chr1 85499704 85499826 -157164527 - MIR SINE MIR -59 149 31 242 377 26 26 chr1 85499941 85500055 -157164298 - L2 LINE L2 -11 3261 3148 760 168 0 0 chr1 85501336 85501449 -157162904 + AluJo SINE Alu 3 115 -187 2005 130 77 14 chr1 85501449 85501801 -157162552 + THE1C LTR MaLR 1 375 0 278 120 0 20 chr1 85501801 85501851 -157162502 + THE1C-int LTR MaLR 1 49 -1531 1103 167 11 11 chr1 85501854 85502040 -157162313 + AluJo SINE Alu 122 307 -5 40703 33 22 2 chr1 85503104 85509133 -157155220 - L1PA2 LINE L1 0 6155 2 2979 177 15 2 chr1 85509144 85509736 -157154617 - L1MB4 LINE L1 0 6180 5581 1008 186 0 22 chr1 85509756 85509939 -157154414 - AluJb SINE Alu 0 312 134 1922 124 50 30 chr1 85509939 85510238 -157154115 - AluSx SINE Alu -7 305 1 696 228 110 98 chr1 85510307 85510724 -157153629 - MLT1H LTR MaLR -4 545 124 500 273 8 0 chr1 85510974 85511102 -157153251 - L2 LINE L2 0 3313 3185 375 129 129 0 chr1 85511360 85511430 -157152923 - MADE1 DNA Mariner -1 79 1 22 0 0 0 chr1 85511615 85511637 -157152716 + AT_rich Low_complexity Low_complexity 1 22 0 640 244 76 20 chr1 85511908 85512137 -157152216 + MIR SINE MIR 20 257 -5 2244 104 0 0 chr1 85512149 85512446 -157151907 - AluSx SINE Alu -15 297 1 226 293 187 0 chr1 85513718 85513793 -157150560 + L2 LINE L2 3178 3266 -6 2248 115 7 0 chr1 85513831 85514136 -157150217 + AluSx SINE Alu 1 307 -5 249 341 0 24 chr1 85515050 85515132 -157149221 + MER5A DNA MER1_type 108 187 -2 24 96 0 0 chr1 85515195 85515268 -157149085 + AT_rich Low_complexity Low_complexity 1 73 0 25 51 0 0 chr1 85515291 85515330 -157149023 + AT_rich Low_complexity Low_complexity 1 39 0 900 286 13 21 chr1 85515478 85515716 -157148637 - MIR SINE MIR -25 237 2 395 314 75 97 chr1 85516359 85516719 -157147634 - L2 LINE L2 0 3272 2921 289 286 0 0 chr1 85518550 85518606 -157145747 - L2 LINE L2 -10 3262 3207 1480 194 160 23 chr1 85518614 85518653 -157145700 - MLT2B1 LTR ERVL -1 519 487 372 59 0 0 chr1 85518653 85518704 -157145649 + (CA)n Simple_repeat Simple_repeat 2 52 0 1480 194 160 23 chr1 85518704 85519096 -157145257 - MLT2B1 LTR ERVL -33 487 29 250 27 0 0 chr1 85519116 85519153 -157145200 + L1MA4A LINE L1 6261 6297 -6 446 256 128 81 chr1 85519181 85519568 -157144785 - L2 LINE L2 -108 3164 2763 238 187 15 52 chr1 85519632 85519766 -157144587 + CT-rich Low_complexity Low_complexity 3 131 0 644 149 0 53 chr1 85519775 85519963 -157144390 + (TCC)n Simple_repeat Simple_repeat 2 179 0 295 136 0 0 chr1 85519990 85520049 -157144304 - L1MA4A LINE L1 -1 6302 6244 269 321 66 19 chr1 85520155 85520261 -157144092 - MIR SINE MIR -80 128 18 254 287 31 75 chr1 85520998 85521252 -157143101 - MER102b DNA MER1_type -1 340 98 504 263 107 45 chr1 85521963 85522187 -157142166 - MIR SINE MIR -12 250 13 545 236 139 10 chr1 85522219 85522427 -157141926 + MIR SINE MIR 28 262 0 1770 177 0 0 chr1 85524035 85524317 -157140036 - AluJb SINE Alu -30 282 1 932 260 33 24 chr1 85524427 85524771 -157139582 - MLT1G3 LTR MaLR -199 331 1 2124 147 41 34 chr1 85526504 85526891 -157137462 + MLT1B LTR MaLR 1 390 0 22 35 0 0 chr1 85527316 85527345 -157137008 + AT_rich Low_complexity Low_complexity 1 29 0 421 286 56 0 chr1 85527877 85528003 -157136350 + L2 LINE L2 3140 3272 0 1790 135 56 0 chr1 85528881 85529148 -157135205 + AluSx SINE Alu 15 296 -16 435 259 28 0 chr1 85529635 85529743 -157134610 + MIR SINE MIR 21 131 -77 214 372 0 31 chr1 85530262 85530391 -157133962 + L2 LINE L2 3159 3283 -30 432 0 0 0 chr1 85530408 85530456 -157133897 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 199 245 0 38 chr1 85530996 85531049 -157133304 - MIR SINE MIR -12 250 200 378 287 114 23 chr1 85531123 85531430 -157132923 - L2 LINE L2 -694 2620 2286 270 292 0 14 chr1 85532126 85532198 -157132155 - L2 LINE L2 -1 3271 3201 637 240 78 0 chr1 85532317 85532471 -157131882 - MIR SINE MIR -55 207 42 201 229 21 0 chr1 85532758 85532806 -157131547 - L2 LINE L2 -586 2728 2680 250 336 57 36 chr1 85532885 85533132 -157131221 - MLT1J1 LTR MaLR -23 423 172 278 222 129 92 chr1 85533872 85534039 -157130314 + MIR SINE MIR 17 192 -58 267 368 100 32 chr1 85535375 85535625 -157128728 - L2 LINE L2 -2 3270 3004 262 286 52 0 chr1 85535677 85535754 -157128599 - MIR SINE MIR -64 198 118 271 322 92 44 chr1 85535860 85536133 -157128220 - L2 LINE L2 -548 2766 2481 365 269 160 8 chr1 85536228 85536347 -157128006 - MIR3 SINE MIR -64 144 8 253 219 270 62 chr1 85536887 85537065 -157127288 - L2 LINE L2 -4 3309 3095 411 292 0 29 chr1 85537069 85537206 -157127147 + MIR SINE MIR 113 245 -17 345 287 139 30 chr1 85537250 85537480 -157126873 - L2 LINE L2 -254 3059 2805 1822 220 41 37 chr1 85537668 85538132 -157126221 - MLT1C LTR MaLR -1 466 1 375 286 64 58 chr1 85538517 85538635 -157125718 + MIR3 SINE MIR 34 155 -53 954 225 11 0 chr1 85538635 85538822 -157125531 - MER5A DNA MER1_type 0 189 1 375 286 64 58 chr1 85538822 85538874 -157125479 + MIR3 SINE MIR 155 205 -3 3297 188 61 45 chr1 85539264 85540062 -157124291 + L1MB8 LINE L1 5367 6177 -1 290 247 11 34 chr1 85540257 85540346 -157124007 - MIR SINE MIR -1 261 175 * 665 308 115 23 chr1 85540327 85540674 -157123679 - L2 LINE L2 0 3313 2935 2358 128 25 8 chr1 85540816 85541207 -157123146 + L1PA16 LINE L1 5793 6189 0 781 304 62 19 chr1 85541212 85541581 -157122772 - L2 LINE L2 -534 2780 2396 188 380 25 13 chr1 85541607 85541686 -157122667 - MIR SINE MIR -62 146 67 183 156 0 0 chr1 85543214 85543246 -157121107 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 410 338 141 0 chr1 85544639 85544852 -157119501 + L2 LINE L2 1828 2070 -1244 192 319 0 43 chr1 85544964 85544993 -157119360 + L2 LINE L2 3176 3205 -67 434 101 130 0 chr1 85544993 85545062 -157119291 + MADE1 DNA Mariner 3 80 0 192 319 0 43 chr1 85545062 85545101 -157119252 + L2 LINE L2 3205 3241 -31 746 279 18 35 chr1 85545630 85545856 -157118497 + MIR SINE MIR 31 252 -10 228 321 167 0 chr1 85545986 85546070 -157118283 + L2 LINE L2 3184 3281 -32 337 336 30 0 chr1 85546443 85546577 -157117776 - MIR SINE MIR -113 149 12 451 292 53 62 chr1 85547380 85547606 -157116747 + MIR SINE MIR 18 241 -21 367 255 31 10 chr1 85548603 85548701 -157115652 - L2 LINE L2 0 3313 3214 482 169 11 164 chr1 85548794 85548983 -157115370 - MER112 DNA MER1_type -16 244 85 603 150 45 22 chr1 85549001 85549123 -157115230 + L1MB7 LINE L1 6019 6139 -41 240 250 111 14 chr1 85549124 85549196 -157115157 - MER112 DNA MER1_type -181 79 1 213 293 105 57 chr1 85549196 85549425 -157114928 - L2 LINE L2 -209 3063 2824 425 272 16 16 chr1 85549477 85549602 -157114751 + MIR SINE MIR 28 152 -110 757 205 0 8 chr1 85549750 85549872 -157114481 + FLAM_A SINE Alu 1 121 -12 300 294 62 50 chr1 85552403 85552563 -157111790 - MIR SINE MIR -52 210 49 793 278 4 43 chr1 85555024 85555258 -157109095 + MIR SINE MIR 16 240 -22 355 217 26 52 chr1 85556028 85556143 -157108210 + MIR SINE MIR 124 235 -27 33 43 0 0 chr1 85556165 85556212 -157108141 + AT_rich Low_complexity Low_complexity 1 47 0 2044 133 10 0 chr1 85556255 85556556 -157107797 + AluSx SINE Alu 1 304 -8 370 269 8 90 chr1 85556950 85557084 -157107269 + L2 LINE L2 3188 3310 -3 219 274 32 0 chr1 85557144 85557206 -157107147 + MIR SINE MIR 61 124 -138 224 272 18 118 chr1 85557209 85557378 -157106975 + MIR SINE MIR 86 237 -25 268 328 123 17 chr1 85558619 85558854 -157105499 + L2 LINE L2 2594 2853 -461 700 282 68 21 chr1 85559010 85559244 -157105109 - MIR SINE MIR -2 260 16 288 344 77 59 chr1 85559228 85559501 -157104852 + L2 LINE L2 2989 3266 -6 * 265 233 0 17 chr1 85560699 85560759 -157103594 - L2 LINE L2 0 3272 3214 1530 218 43 59 chr1 85560893 85561426 -157102927 - MER39 LTR ERV1 0 707 1 458 234 163 54 chr1 85561769 85561889 -157102464 + MIR SINE MIR 18 166 -96 2677 122 40 24 chr1 85561889 85562314 -157102039 + MSTB1 LTR MaLR 1 432 0 458 234 163 54 chr1 85562314 85562377 -157101976 + MIR SINE MIR 166 221 -41 203 290 90 10 chr1 85562458 85562558 -157101795 + MIR SINE MIR 109 216 -46 229 156 67 0 chr1 85562580 85562625 -157101728 + MER5B DNA MER1_type 1 48 -130 3039 231 77 16 chr1 85562688 85563458 -157100895 - L1MC4a LINE L1 0 7808 6980 204 97 0 0 chr1 85563458 85563489 -157100864 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3039 231 77 16 chr1 85563489 85563571 -157100782 - L1MC4a LINE L1 -828 6980 6904 299 356 50 0 chr1 85563571 85563672 -157100681 + MER5B DNA MER1_type 36 141 -37 525 268 256 30 chr1 85565771 85566304 -157098049 - L2 LINE L2 -9 3304 2642 524 304 53 18 chr1 85566953 85567180 -157097173 + MARNA DNA Mariner 6 240 -346 223 321 0 25 chr1 85567718 85567799 -157096554 + MIR3 SINE MIR 109 187 -21 189 0 0 0 chr1 85568033 85568054 -157096299 + (CA)n Simple_repeat Simple_repeat 2 22 0 296 162 81 0 chr1 85570661 85570735 -157093618 + MER81 DNA DNA 35 114 0 509 196 56 0 chr1 85571038 85571145 -157093208 + L2 LINE L2 3190 3302 -11 221 259 17 0 chr1 85572334 85572392 -157091961 - MIR SINE MIR -111 151 93 840 292 9 0 chr1 85572431 85572650 -157091703 - MIR SINE MIR -32 230 10 1045 284 88 27 chr1 85572973 85574098 -157090255 - L1ME2 LINE L1 -306 5858 4663 1204 260 60 40 chr1 85574121 85574391 -157089962 - L1ME3 LINE L1 -2 6554 6268 2387 101 0 3 chr1 85574391 85574699 -157089654 - AluSq SINE Alu -6 307 1 1204 260 60 40 chr1 85574699 85574908 -157089445 - L1ME3 LINE L1 -288 6268 6065 930 236 14 19 chr1 85574908 85575124 -157089229 - MLT1A2 LTR MaLR 0 374 160 1194 292 80 16 chr1 85575174 85575752 -157088601 - L1ME3 LINE L1 -2300 4240 3626 2103 230 47 61 chr1 85575758 85576275 -157088078 - L1ME3 LINE L1 -2970 3570 3072 2640 36 0 10 chr1 85576275 85576584 -157087769 + AluY SINE Alu 1 306 -5 2103 230 47 61 chr1 85576584 85577066 -157087287 - L1ME3 LINE L1 -3468 3072 2585 296 253 74 0 chr1 85577066 85577161 -157087192 - L1ME3 LINE L1 -4629 1911 1810 300 227 0 0 chr1 85577172 85577260 -157087093 + (TA)n Simple_repeat Simple_repeat 1 88 0 228 238 0 0 chr1 85577277 85577319 -157087034 + MLT2D LTR ERVL 371 412 -2 1200 180 10 42 chr1 85577320 85577609 -157086744 - L1MC4a LINE L1 -530 7278 6999 545 284 98 24 chr1 85577580 85578289 -157086064 - L1MEd LINE L1 -3244 3138 2369 * 577 293 62 19 chr1 85578800 85579317 -157085036 - L1MEd LINE L1 -856 1887 1243 369 277 115 0 chr1 85579474 85579604 -157084749 + L1MEd LINE L1 696 840 -5279 1608 167 88 26 chr1 85579672 85580014 -157084339 - MLT1A1 LTR MaLR -2 363 1 519 289 308 8 chr1 85580071 85580441 -157083912 - L3 LINE CR1 -737 840 360 2309 91 40 40 chr1 85580753 85581128 -157083225 - THE1C LTR MaLR 0 375 1 273 57 0 0 chr1 85581881 85581916 -157082437 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 40 0 40 chr1 85582245 85582260 -157082093 + AT_rich Low_complexity Low_complexity 1 15 -33 1465 177 4 16 chr1 85582260 85582509 -157081844 + AluJo SINE Alu 37 282 -30 21 40 0 40 chr1 85582509 85582543 -157081810 + AT_rich Low_complexity Low_complexity 15 48 0 331 301 164 27 chr1 85583951 85584134 -157080219 + MLT1K LTR MaLR 25 232 -356 468 303 120 13 chr1 85584175 85584409 -157079944 + MLT1K LTR MaLR 328 586 -2 357 213 16 74 chr1 85584782 85584878 -157079475 - MER112 DNA MER1_type -145 115 26 2300 91 3 3 chr1 85584878 85585175 -157079178 - AluSc SINE Alu -12 297 1 357 213 16 74 chr1 85585175 85585200 -157079153 - MER112 DNA MER1_type -234 26 1 566 216 31 49 chr1 85585233 85585395 -157078958 - MER112 DNA MER1_type -101 159 1 189 0 0 0 chr1 85586701 85586722 -157077631 + (A)n Simple_repeat Simple_repeat 1 21 0 3128 97 19 7 chr1 85586837 85587302 -157077051 - L1PA14 LINE L1 -2 6159 5689 390 193 123 0 chr1 85587476 85587601 -157076752 - LTR41 LTR ERVL 0 795 634 802 267 25 15 chr1 85587604 85587806 -157076547 + ERVL LTR ERVL 4874 5077 -687 539 261 36 141 chr1 85587807 85588504 -157075849 - LTR41 LTR ERVL -145 628 5 321 231 55 0 chr1 85588813 85588904 -157075449 - ERVL LTR ERVL -332 5432 5337 1012 269 21 25 chr1 85589043 85589329 -157075024 - ERVL LTR ERVL -615 5149 4865 1156 236 86 30 chr1 85590216 85590680 -157073673 - MLT1G3 LTR MaLR -14 553 1 351 255 208 0 chr1 85590936 85591085 -157073268 - MER5A DNA MER1_type 0 189 10 2518 56 0 7 chr1 85592036 85592341 -157072012 - AluY SINE Alu -8 303 1 395 255 171 11 chr1 85595399 85595662 -157068691 + L1ME4a LINE L1 5721 6025 -96 289 278 230 30 chr1 85596316 85596546 -157067807 + L2 LINE L2 3013 3288 -25 5156 105 6 10 chr1 85599987 85600767 -157063586 - MER11C LTR ERVK -294 777 1 9419 79 18 0 chr1 85600768 85601983 -157062370 - HERVL LTR ERVL -445 5209 3973 35 54 0 0 chr1 85603049 85603105 -157061248 + AT_rich Low_complexity Low_complexity 1 56 0 558 293 0 13 chr1 85604073 85604223 -157060130 + MIR SINE MIR 3 150 -112 22 0 0 0 chr1 85604631 85604653 -157059700 + AT_rich Low_complexity Low_complexity 1 22 0 515 228 21 95 chr1 85605275 85605464 -157058889 + MER20B DNA MER1_type 4 178 -605 2496 53 0 7 chr1 85606086 85606385 -157057968 - AluY SINE Alu -14 297 1 411 83 0 0 chr1 85606455 85606515 -157057838 + (TG)n Simple_repeat Simple_repeat 1 60 0 1074 284 101 29 chr1 85606718 85607330 -157057023 - HAL1 LINE L1 -328 2179 1524 268 363 39 10 chr1 85607319 85607421 -157056932 - HAL1 LINE L1 -1815 692 588 * 555 256 91 75 chr1 85607451 85607759 -157056594 - HAL1 LINE L1 -2186 321 9 2366 81 7 3 chr1 85608553 85608863 -157055490 + AluY SINE Alu 1 311 0 180 0 0 0 chr1 85609467 85609487 -157054866 + (T)n Simple_repeat Simple_repeat 1 20 0 2324 151 13 0 chr1 85609506 85609878 -157054475 + MER57B LTR ERV1 1 377 -57 854 176 0 19 chr1 85609878 85610037 -157054316 + MER57B-int LTR ERV1 228 383 -7154 275 245 32 32 chr1 85610038 85610132 -157054221 + AluY SINE Alu 2 95 -206 1343 168 0 9 chr1 85610794 85611020 -157053333 - AluJo SINE Alu -7 305 82 411 357 80 9 chr1 85611029 85611365 -157052988 - L1M4 LINE L1 -968 5178 4819 1005 82 0 0 chr1 85611365 85611499 -157052854 + MLT2A2 LTR ERVL 1 134 -319 316 360 34 34 chr1 85611833 85612125 -157052228 - L1M4 LINE L1 -1643 4503 4212 1649 167 0 24 chr1 85612772 85613060 -157051293 - AluJb SINE Alu -31 281 1 25 0 0 0 chr1 85614536 85614561 -157049792 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr1 85615537 85615575 -157048778 + AT_rich Low_complexity Low_complexity 1 38 0 1182 149 14 14 chr1 85616127 85616342 -157048011 + L1MB3 LINE L1 5948 6162 -21 2044 144 56 24 chr1 85616343 85616719 -157047634 + MLT1B LTR MaLR 1 388 -2 2249 102 13 0 chr1 85616865 85617170 -157047183 + AluSx SINE Alu 1 309 -3 683 205 50 25 chr1 85617176 85617376 -157046977 + L1M4 LINE L1 5111 5315 -831 635 163 13 92 chr1 85617376 85617529 -157046824 - Charlie1 DNA MER1_type -1156 1605 1465 228 300 0 0 chr1 85617799 85617869 -157046484 - L1MC4 LINE L1 -137 7905 7836 30 59 0 0 chr1 85618108 85618159 -157046194 + AT_rich Low_complexity Low_complexity 1 51 0 628 248 0 0 chr1 85619956 85620089 -157044264 + FLAM_A SINE Alu 1 133 0 716 200 0 49 chr1 85621384 85621623 -157042730 + MER58 DNA MER1_type 24 2396 -24 214 26 79 0 chr1 85622240 85622278 -157042075 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 279 79 0 0 chr1 85622278 85622316 -157042037 + MER58 DNA MER1_type 2379 2416 -4 548 263 65 0 chr1 85622322 85622528 -157041825 - L1ME LINE L1 -467 5723 5478 508 322 61 54 chr1 85622874 85623284 -157041069 - L1ME LINE L1 -1119 5096 4684 494 269 218 5 chr1 85623298 85623495 -157040858 + MIR SINE MIR 3 241 -21 849 307 84 37 chr1 85623756 85624459 -157039894 - L1ME LINE L1 -1808 4407 3672 1381 286 133 33 chr1 85624658 85626038 -157038315 - L1ME LINE L1 -4023 2373 857 678 253 40 0 chr1 85626540 85626690 -157037663 - MER58A DNA MER1_type 0 156 1 277 290 44 33 chr1 85627345 85627626 -157036727 - L1M4 LINE L1 -3193 3189 2903 22 56 0 0 chr1 85627758 85627794 -157036559 + AT_rich Low_complexity Low_complexity 1 36 0 182 77 39 58 chr1 85627902 85627954 -157036399 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 384 287 25 55 chr1 85628588 85628773 -157035580 - HAL1 LINE L1 -856 1887 1632 2790 0 0 25 chr1 85628773 85629087 -157035266 + AluYa5 SINE Alu 1 306 -5 384 287 25 55 chr1 85629087 85629190 -157035163 - HAL1 LINE L1 -1111 1632 1527 520 199 63 34 chr1 85629243 85629449 -157034904 - L1MEd LINE L1 -4921 1198 987 725 304 37 17 chr1 85629461 85629950 -157034403 + MLT1H LTR MaLR 14 547 -2 1005 309 81 35 chr1 85630070 85630117 -157034236 - L1MEd LINE L1 -5227 892 849 2186 115 0 19 chr1 85630117 85630430 -157033923 - AluSx SINE Alu -5 307 1 1005 309 81 35 chr1 85630430 85630534 -157033819 - L1MEd LINE L1 -5270 849 751 2428 219 32 67 chr1 85630534 85631210 -157033143 + MLT1E1 LTR MaLR 1 653 -1 1005 309 81 35 chr1 85631210 85631684 -157032669 - L1MEd LINE L1 -5368 751 237 373 188 21 42 chr1 85632244 85632340 -157032013 - L1MEd LINE L1 -5987 132 39 1025 179 103 40 chr1 85632571 85632823 -157031530 + MSTA LTR MaLR 1 268 -160 200 205 0 0 chr1 85632823 85632862 -157031491 + CT-rich Low_complexity Low_complexity 1 39 0 908 186 164 0 chr1 85632898 85633081 -157031272 + MSTB LTR MaLR 214 426 0 35 41 0 0 chr1 85633609 85633658 -157030695 + AT_rich Low_complexity Low_complexity 1 49 0 26 30 0 0 chr1 85634341 85634374 -157029979 + AT_rich Low_complexity Low_complexity 1 33 0 292 331 163 34 chr1 85634534 85634650 -157029703 + L3 LINE CR1 724 824 -753 216 0 0 0 chr1 85634650 85634674 -157029679 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 292 331 163 34 chr1 85634674 85634907 -157029446 + L3 LINE CR1 824 1118 -459 260 304 78 0 chr1 85634914 85635016 -157029337 - MIR SINE MIR -53 209 100 1741 131 75 39 chr1 85635021 85635381 -157028972 - THE1C LTR MaLR 0 375 3 773 278 60 20 chr1 85636429 85636681 -157027672 - MIR SINE MIR 0 262 1 438 135 0 135 chr1 85637785 85637896 -157026457 - L1M4 LINE L1 -1468 4678 4583 1390 209 133 43 chr1 85637903 85638467 -157025886 + L1M4 LINE L1 4283 4897 -1249 515 184 0 0 chr1 85638467 85638554 -157025799 - Tigger5 DNA MER2_type 0 2323 2237 265 172 17 69 chr1 85638564 85638622 -157025731 - Tigger5 DNA MER2_type -2268 55 1 1212 175 70 11 chr1 85638622 85638907 -157025446 + L1M4 LINE L1 4896 5197 -949 1290 214 52 8 chr1 85638907 85639041 -157025312 + AluJo SINE Alu 1 128 -184 2025 137 0 3 chr1 85639041 85639347 -157025006 + AluSx SINE Alu 1 305 -7 1290 214 52 8 chr1 85639347 85639479 -157024874 + AluJo SINE Alu 128 279 -33 280 100 0 33 chr1 85639514 85639529 -157024824 + (GGGGA)n Simple_repeat Simple_repeat 4 18 -43 2258 130 11 6 chr1 85639529 85639882 -157024471 - THE1A LTR MaLR 0 355 1 280 100 0 33 chr1 85639882 85639926 -157024427 + (GGGGA)n Simple_repeat Simple_repeat 18 61 0 21 0 0 0 chr1 85640892 85640913 -157023440 + AT_rich Low_complexity Low_complexity 1 21 0 15348 169 36 16 chr1 85641075 85641235 -157023118 + L1MA4 LINE L1 3172 3327 -4392 2271 107 0 7 chr1 85641235 85641544 -157022809 - AluSc SINE Alu -2 307 1 15348 169 36 16 chr1 85641544 85642768 -157021585 + L1MA4 LINE L1 3327 4525 -3194 1682 138 110 11 chr1 85642768 85643050 -157021303 + AluJo SINE Alu 3 312 0 15348 169 36 16 chr1 85643050 85645189 -157019164 + L1MA4 LINE L1 4525 6798 -921 253 23 91 0 chr1 85645189 85645233 -157019120 + A-rich Low_complexity Low_complexity 2 49 0 15348 169 36 16 chr1 85645233 85646174 -157018179 + L1MA4 LINE L1 6798 7719 0 21 0 0 0 chr1 85647156 85647177 -157017176 + AT_rich Low_complexity Low_complexity 1 21 0 213 294 92 50 chr1 85647901 85648020 -157016333 - L2 LINE L2 0 3272 3149 500 221 133 19 chr1 85648389 85648547 -157015806 - MIR SINE MIR -13 249 74 310 308 58 64 chr1 85649323 85649479 -157014874 - L2 LINE L2 -1 3271 3117 2164 136 8 74 chr1 85650236 85650545 -157013808 + THE1B LTR MaLR 1 282 -82 2309 92 0 0 chr1 85650545 85650851 -157013502 - AluSx SINE Alu 0 306 1 2164 136 8 74 chr1 85650851 85650929 -157013424 + THE1B LTR MaLR 282 364 0 10621 101 24 28 chr1 85650929 85652516 -157011837 + THE1B-int LTR MaLR 1 1580 0 2394 127 14 6 chr1 85652516 85652877 -157011476 + THE1B LTR MaLR 1 364 0 287 305 144 0 chr1 85653012 85653130 -157011223 + L2 LINE L2 3137 3271 -1 231 404 12 18 chr1 85653466 85653632 -157010721 - L2 LINE L2 -173 3099 2935 194 316 118 7 chr1 85654524 85654660 -157009693 - L2 LINE L2 -5 3308 3158 307 191 298 0 chr1 85654678 85654762 -157009591 - L2 LINE L2 -13 3300 3192 831 274 44 52 chr1 85655392 85655640 -157008713 + MIR SINE MIR 13 258 -4 391 313 98 0 chr1 85656916 85657028 -157007325 + MIR SINE MIR 24 146 -116 533 374 23 11 chr1 85657186 85657360 -157006993 - MER91A DNA MER1_type -20 176 1 324 297 27 0 chr1 85657360 85657471 -157006882 + MIR SINE MIR 148 261 -1 797 250 102 5 chr1 85657512 85657708 -157006645 - MER58A DNA MER1_type -8 216 2 265 319 11 0 chr1 85658394 85658488 -157005865 + MER94 DNA DNA 40 134 0 189 385 114 18 chr1 85658759 85658925 -157005428 + MER5A DNA MER1_type 1 182 -7 * 237 224 20 0 chr1 85658920 85658969 -157005384 - L2 LINE L2 -552 2762 2713 1227 193 88 42 chr1 85659631 85659916 -157004437 + AluJo SINE Alu 1 298 -14 1618 194 3 7 chr1 85660033 85660337 -157004016 + AluJo SINE Alu 1 303 -9 836 126 0 0 chr1 85660471 85660598 -157003755 + L1PA16 LINE L1 6040 6166 0 274 237 203 17 chr1 85661079 85661197 -157003156 - L2 LINE L2 -1 3271 3132 626 280 47 128 chr1 85662471 85662957 -157001396 + L2 LINE L2 2491 2937 -377 539 273 8 8 chr1 85663096 85663224 -157001129 + L2 LINE L2 3185 3312 -1 2521 67 0 3 chr1 85663726 85664038 -157000315 + AluY SINE Alu 1 311 0 180 0 0 0 chr1 85664642 85664662 -156999691 + (T)n Simple_repeat Simple_repeat 1 20 0 1961 168 5 29 chr1 85664681 85665067 -156999286 + MER57B LTR ERV1 1 377 -57 3459 104 7 60 chr1 85665067 85665224 -156999129 + MER57B-int LTR ERV1 228 392 -7145 2111 96 0 10 chr1 85665224 85665517 -156998836 + AluY SINE Alu 1 290 -21 3459 104 7 60 chr1 85665517 85665908 -156998445 + MER57B-int LTR ERV1 392 747 -6790 5503 134 46 8 chr1 85665908 85666785 -156997568 + MER57B-int LTR ERV1 1441 2350 -5187 742 118 17 0 chr1 85666787 85666906 -156997447 + MER57B-int LTR ERV1 1897 2017 -3929 * 12338 125 36 49 chr1 85666902 85669810 -156994543 + MER57B-int LTR ERV1 2167 5897 -1640 3427 113 8 8 chr1 85669810 85670321 -156994032 + MER9 LTR ERVK 1 511 0 12338 125 36 49 chr1 85670321 85671558 -156992795 + MER57B-int LTR ERV1 5897 7149 -388 513 144 85 34 chr1 85671558 85671676 -156992677 + LTR54B LTR ERV1 8 131 -367 1605 74 126 4 chr1 85671676 85671907 -156992446 + MER57B-int LTR ERV1 7279 7537 0 2700 123 28 2 chr1 85671907 85672330 -156992023 + MER57B LTR ERV1 1 434 0 1764 123 8 62 chr1 85673061 85673426 -156990927 - MER4A LTR ERV1 0 664 261 711 70 0 20 chr1 85673426 85673526 -156990827 - MER4A LTR ERV1 -566 98 1 238 194 75 0 chr1 85673527 85673594 -156990759 - Charlie7 DNA MER1_type -2482 130 59 23 33 0 0 chr1 85674069 85674099 -156990254 + AT_rich Low_complexity Low_complexity 1 30 0 247 105 0 0 chr1 85674815 85674853 -156989500 + MLT2A2 LTR ERVL 1 38 -415 1315 113 0 78 chr1 85674855 85675085 -156989268 - MLT2A2 LTR ERVL -184 269 58 183 42 0 0 chr1 85675085 85675109 -156989244 + (TCTA)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chr1 85675111 85675134 -156989219 + (CA)n Simple_repeat Simple_repeat 2 24 0 325 161 0 0 chr1 85675153 85675209 -156989144 + MLT2A2 LTR ERVL 398 453 0 26239 76 10 2 chr1 85675209 85680362 -156983991 + HERVL-A2 LTR ERVL 1 5207 -447 8847 41 4 10 chr1 85680362 85681440 -156982913 + MER11C LTR ERVK 1 1071 0 26239 76 10 2 chr1 85681440 85681654 -156982699 + HERVL-A2 LTR ERVL 5207 5418 -236 3504 67 18 18 chr1 85681892 85682388 -156981965 + MER11C LTR ERVK 576 1071 0 3099 95 7 32 chr1 85682388 85682850 -156981503 + HERVL-A1 LTR ERVL 5205 5654 0 2843 98 23 2 chr1 85682850 85683246 -156981107 + MLT2A1 LTR ERVL 1 404 -40 231 229 0 0 chr1 85683246 85683307 -156981046 + (TA)n Simple_repeat Simple_repeat 1 61 0 238 132 75 38 chr1 85683307 85683360 -156980993 + MLT2A1 LTR ERVL 390 444 0 530 278 126 16 chr1 85683392 85683583 -156980770 - MIR SINE MIR -49 213 2 1786 177 0 40 chr1 85683617 85683939 -156980414 + AluJo SINE Alu 1 309 -3 1118 121 0 0 chr1 85685255 85685404 -156978949 + AluJo SINE Alu 1 149 -163 944 120 0 0 chr1 85685526 85685659 -156978694 + AluJb SINE Alu 163 295 -17 351 0 0 0 chr1 85686757 85686796 -156977557 + (TG)n Simple_repeat Simple_repeat 2 40 0 5195 127 62 2 chr1 85687267 85688321 -156976032 + L1PA15 LINE L1 5057 6165 0 241 162 29 15 chr1 85689273 85689341 -156975012 + (TA)n Simple_repeat Simple_repeat 2 70 0 5283 109 9 0 chr1 85689341 85690540 -156973813 - L1PA16 LINE L1 -7 6159 4975 296 250 65 56 chr1 85690775 85690883 -156973470 - MIR SINE MIR -60 148 40 233 387 0 0 chr1 85691254 85691316 -156973037 - MIR SINE MIR -190 72 11 269 328 41 33 chr1 85691816 85691938 -156972415 + MIR3 SINE MIR 54 176 -32 694 266 143 20 chr1 85692001 85692562 -156971791 + L1M4 LINE L1 4165 4794 -1352 32 75 0 0 chr1 85693106 85693173 -156971180 + AT_rich Low_complexity Low_complexity 1 67 0 200 188 42 0 chr1 85693869 85693917 -156970436 + A-rich Low_complexity Low_complexity 4 53 0 21 36 0 0 chr1 85693932 85693960 -156970393 + AT_rich Low_complexity Low_complexity 1 28 0 347 333 59 27 chr1 85694276 85694462 -156969891 + MIR SINE MIR 34 225 -37 1771 153 66 0 chr1 85695023 85695311 -156969042 + AluSx SINE Alu 1 307 -5 1787 139 21 10 chr1 85695325 85695613 -156968740 + AluJb SINE Alu 7 297 -15 5892 139 20 42 chr1 85697191 85698286 -156966067 + MER11C LTR ERVK 1 1071 0 182 243 100 0 chr1 85699107 85699177 -156965176 - MIR SINE MIR -89 173 97 524 314 74 74 chr1 85699385 85699913 -156964440 + LTR67 LTR ERVL 26 553 -4 1984 146 0 0 chr1 85700429 85700724 -156963629 + AluSx SINE Alu 1 295 -17 1594 206 0 14 chr1 85701485 85701777 -156962576 + AluJo SINE Alu 1 288 -24 36 0 0 0 chr1 85701782 85701818 -156962535 + AT_rich Low_complexity Low_complexity 1 36 0 568 309 113 25 chr1 85703095 85703503 -156960850 + L1ME4a LINE L1 5609 6052 -69 486 277 9 30 chr1 85704240 85704445 -156959908 + MIR SINE MIR 30 228 -34 632 241 82 49 chr1 85704579 85704824 -156959529 + L2 LINE L2 3061 3313 0 552 269 39 0 chr1 85705799 85705929 -156958424 + MIR SINE MIR 38 172 -90 10988 164 50 11 chr1 85706078 85706473 -156957880 + L1MA5 LINE L1 3629 4007 -3558 2173 101 0 0 chr1 85706473 85706749 -156957604 - AluSx SINE Alu -16 296 21 10988 164 50 11 chr1 85706749 85708699 -156955654 + L1MA5 LINE L1 4007 6067 -1498 5205 136 33 44 chr1 85708695 85709782 -156954571 + L1MA5 LINE L1 6641 7713 -6 * 239 93 23 0 chr1 85710153 85710196 -156954157 + (TG)n Simple_repeat Simple_repeat 2 45 0 253 346 29 26 chr1 85710242 85710370 -156953983 + MIR SINE MIR 2 133 -75 236 380 58 7 chr1 85710482 85710619 -156953734 - L2 LINE L2 -2 3270 3127 543 351 147 43 chr1 85710639 85711248 -156953105 - L2 LINE L2 0 3272 2593 311 152 40 71 chr1 85711563 85711662 -156952691 + Charlie7 DNA MER1_type 2517 2612 0 221 351 153 49 chr1 85711683 85712272 -156952081 - L2 LINE L2 -462 2852 2203 374 0 0 21 chr1 85712722 85712769 -156951584 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 181 188 0 0 chr1 85713783 85713815 -156950538 - L2 LINE L2 0 3313 3282 2044 190 106 35 chr1 85713822 85714132 -156950221 + LTR64 LTR ERVK 1 288 -270 2022 136 24 71 chr1 85714132 85714338 -156950015 - THE1B LTR MaLR 0 364 182 1871 124 48 7 chr1 85714338 85714644 -156949709 + AluSx SINE Alu 1 317 0 2022 136 24 71 chr1 85714644 85714818 -156949535 - THE1B LTR MaLR -182 182 1 8942 100 96 42 chr1 85714818 85716317 -156948036 - THE1B-int LTR MaLR 0 1580 1 2383 127 3 16 chr1 85716317 85716686 -156947667 - THE1B LTR MaLR 0 364 1 2044 190 106 35 chr1 85716686 85716894 -156947459 + LTR64 LTR ERVK 287 558 0 564 319 85 19 chr1 85716904 85717174 -156947179 - L2 LINE L2 -65 3248 2961 1746 167 46 0 chr1 85717244 85717568 -156946785 - MER44D DNA MER2_type 0 609 1 261 98 24 0 chr1 85717591 85717632 -156946721 - MLT1G LTR MaLR -6 584 543 2389 118 73 25 chr1 85717754 85718152 -156946201 - MSTA LTR MaLR 0 428 12 1932 124 7 4 chr1 85718265 85718540 -156945813 + AluSx SINE Alu 21 296 -16 227 298 121 26 chr1 85718545 85718850 -156945503 - L1M4 LINE L1 -1316 4830 4497 2274 92 3 3 chr1 85718874 85719166 -156945187 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr1 85719270 85719294 -156945059 + AT_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr1 85719379 85719424 -156944929 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr1 85719679 85719702 -156944651 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 258 32 0 0 chr1 85719986 85720017 -156944336 + (CA)n Simple_repeat Simple_repeat 2 32 0 794 326 119 28 chr1 85720275 85721089 -156943264 - L2 LINE L2 0 3272 2373 2041 138 0 0 chr1 85721377 85721668 -156942685 + AluSx SINE Alu 1 291 -21 2194 191 115 0 chr1 85722440 85722891 -156941462 + MLT1D LTR MaLR 3 505 0 260 280 21 11 chr1 85723131 85723224 -156941129 + L1ME4a LINE L1 5962 6055 -66 487 310 176 11 chr1 85723229 85723490 -156940863 - L2 LINE L2 -6 3307 3004 21 0 0 0 chr1 85723567 85723588 -156940765 + AT_rich Low_complexity Low_complexity 1 21 0 702 305 76 8 chr1 85723851 85724232 -156940121 + L1ME LINE L1 5227 5632 -532 555 308 64 2 chr1 85724301 85724689 -156939664 + MLT1L LTR MaLR 142 611 -4 1700 190 66 49 chr1 85724864 85725316 -156939037 - MLT1C LTR MaLR 0 467 8 23 33 0 0 chr1 85725630 85725660 -156938693 + AT_rich Low_complexity Low_complexity 1 30 0 883 68 0 30 chr1 85726232 85726364 -156937989 + L1PA12 LINE L1 6031 6158 -10 2600 120 93 13 chr1 85726367 85726643 -156937710 - L1MA3 LINE L1 -205 6100 5773 1467 111 13 43 chr1 85726643 85726878 -156937475 + MER30 DNA MER1_type 3 230 0 2600 120 93 13 chr1 85726878 85727052 -156937301 - L1MA3 LINE L1 -532 5773 5614 11204 171 38 11 chr1 85727058 85729827 -156934526 - L1M1 LINE L1 -4031 3534 9 * 14131 205 30 28 chr1 85729825 85732816 -156931537 - L1M1 LINE L1 -616 7103 4164 187 51 0 51 chr1 85732816 85732855 -156931498 + (TAAAA)n Simple_repeat Simple_repeat 1 37 0 14131 205 30 28 chr1 85732855 85734970 -156929383 - L1M1 LINE L1 -3555 4164 2054 186 43 0 0 chr1 85734991 85735014 -156929339 + (T)n Simple_repeat Simple_repeat 1 23 0 693 327 64 50 chr1 85735317 85735819 -156928534 - L1M1 LINE L1 -5772 1724 1216 2385 79 3 22 chr1 85736266 85736581 -156927772 - AluSx SINE Alu -3 309 1 209 383 53 21 chr1 85736734 85736922 -156927431 + L2 LINE L2 2311 2504 -810 2484 208 108 109 chr1 85737208 85738975 -156925378 + MER34-int LTR ERV1 833 2596 -2340 1552 209 11 3 chr1 85738997 85739279 -156925074 + AluJo SINE Alu 1 284 -28 340 148 0 0 chr1 85739384 85739438 -156924915 + MSTB LTR MaLR 1 54 -372 1214 204 0 22 chr1 85739439 85739670 -156924683 + AluSg/x SINE Alu 85 310 -2 400 93 27 27 chr1 85739673 85739748 -156924605 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1829 183 57 19 chr1 85739748 85740120 -156924233 + MSTB LTR MaLR 41 426 0 4310 190 85 70 chr1 85740121 85741412 -156922941 + MER34-int LTR ERV1 2968 4068 -868 2309 106 3 0 chr1 85741414 85741726 -156922627 - AluSp SINE Alu 0 313 1 24 77 0 0 chr1 85741726 85741778 -156922575 + AT_rich Low_complexity Low_complexity 1 52 0 794 179 0 0 chr1 85741781 85741904 -156922449 - FLAM_A SINE Alu -9 124 2 3020 170 65 67 chr1 85741908 85742725 -156921628 + MER34-int LTR ERV1 4057 6174 -157 2750 193 6 16 chr1 85742792 85743337 -156921016 + MER34 LTR ERV1 1 539 -3 714 201 13 0 chr1 85743632 85743781 -156920572 - FRAM SINE Alu -21 155 5 602 360 48 4 chr1 85743811 85744061 -156920292 + MIR SINE MIR 2 262 0 703 155 9 0 chr1 85744154 85744270 -156920083 - FLAM_A SINE Alu -16 126 10 286 263 115 67 chr1 85744363 85744572 -156919781 + L2 LINE L2 2839 3057 -215 442 273 16 16 chr1 85744620 85744741 -156919612 - MIR SINE MIR -18 244 124 188 375 89 9 chr1 85744858 85744970 -156919383 + L2 LINE L2 3137 3257 -15 33 0 0 0 chr1 85745146 85745179 -156919174 + AT_rich Low_complexity Low_complexity 1 33 0 1757 138 85 25 chr1 85745946 85746300 -156918053 + THE1C LTR MaLR 1 375 0 781 263 31 35 chr1 85746300 85746399 -156917954 - MIR SINE MIR -4 258 160 1928 226 10 5 chr1 85746399 85746793 -156917560 - MSTD LTR MaLR 0 396 1 781 263 31 35 chr1 85746793 85746948 -156917405 - MIR SINE MIR -102 160 5 245 321 0 0 chr1 85747267 85747348 -156917005 - L3b LINE CR1 -181 1402 1322 6218 154 18 8 chr1 85747918 85749021 -156915332 - L1MC1 LINE L1 0 6333 5219 293 291 116 0 chr1 85749128 85749214 -156915139 - L2 LINE L2 -4 3309 3214 206 352 0 11 chr1 85749384 85749475 -156914878 - MIR SINE MIR -13 249 160 2280 85 0 7 chr1 85749541 85749835 -156914518 + AluSp SINE Alu 1 292 -21 216 0 0 0 chr1 85749840 85749864 -156914489 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 16363 35 3 1 chr1 85750477 85753245 -156911108 - L1PA5 LINE L1 0 6154 3383 16650 54 1 0 chr1 85753245 85755384 -156908969 + L1PA5 LINE L1 1239 3378 -2768 261 224 41 41 chr1 85756275 85756373 -156907980 - L1MEc LINE L1 -4813 1750 1653 871 238 67 0 chr1 85756374 85756584 -156907769 - MER58A DNA MER1_type 0 224 1 248 292 68 12 chr1 85756604 85756765 -156907588 - L1MEc LINE L1 -4896 1488 1319 2376 187 107 36 chr1 85756765 85757590 -156906763 + LTR28 LTR ERV1 1 1020 0 2139 254 82 55 chr1 85757607 85758816 -156905537 - L1MEc LINE L1 -5121 1442 202 859 249 67 34 chr1 85758980 85759249 -156905104 + L1MC4 LINE L1 7280 7557 -485 1604 210 67 15 chr1 85759507 85759916 -156904437 - MLT1D LTR MaLR 0 505 103 2250 99 0 0 chr1 85760230 85760523 -156903830 - AluSc SINE Alu -16 293 1 2625 194 53 55 chr1 85761164 85761819 -156902534 - MLT1E1 LTR MaLR 0 654 1 237 294 56 32 chr1 85762850 85762976 -156901377 - L1ME4a LINE L1 -17 6104 5976 23 54 0 0 chr1 85763065 85763102 -156901251 + AT_rich Low_complexity Low_complexity 1 37 0 286 284 39 39 chr1 85763177 85763304 -156901049 - L1ME4a LINE L1 -437 5684 5558 1715 159 13 33 chr1 85763609 85763910 -156900443 + AluJb SINE Alu 1 295 -17 405 293 89 39 chr1 85763976 85764256 -156900097 - L1ME4a LINE L1 -1088 5058 4765 22 0 0 0 chr1 85764265 85764287 -156900066 + AT_rich Low_complexity Low_complexity 1 22 0 359 284 187 22 chr1 85764359 85764637 -156899716 - L1ME4a LINE L1 -1741 4405 4082 1527 23 2 3 chr1 85765077 85765284 -156899069 - L1PA2 LINE L1 -259 5895 5691 236 140 0 0 chr1 85765268 85765373 -156898980 + L1PA2 LINE L1 6105 6209 0 * 1662 244 107 18 chr1 85765479 85765975 -156898378 - MLT1H LTR MaLR -9 540 1 1391 145 28 0 chr1 85766089 85766338 -156898015 + L1MA4 LINE L1 6042 6297 -3 226 262 57 50 chr1 85767209 85767350 -156897003 - L2 LINE L2 -908 2406 2265 500 326 48 121 chr1 85769939 85770631 -156893722 + L2 LINE L2 264 870 -2444 1605 169 11 4 chr1 85770631 85770897 -156893456 - AluJb SINE Alu -38 274 7 500 326 48 121 chr1 85770897 85771148 -156893205 + L2 LINE L2 870 1138 -2176 1090 169 95 92 chr1 85771163 85771488 -156892865 + L2 LINE L2 2482 2807 -507 245 343 108 0 chr1 85771704 85771806 -156892547 + L2 LINE L2 3149 3261 -11 211 245 20 0 chr1 85772526 85772575 -156891778 - L2 LINE L2 0 3313 3264 848 231 92 25 chr1 85773409 85773647 -156890706 - MIR SINE MIR 0 262 9 813 167 0 0 chr1 85774046 85774166 -156890187 - FLAM_C SINE Alu -23 120 1 2795 259 52 38 chr1 85774204 85774595 -156889758 - L2 LINE L2 -128 3185 2801 225 0 0 0 chr1 85774595 85774620 -156889733 + (TG)n Simple_repeat Simple_repeat 2 26 0 2795 259 52 38 chr1 85774620 85775365 -156888988 - L2 LINE L2 -512 2801 2043 24 0 0 0 chr1 85775763 85775787 -156888566 + AT_rich Low_complexity Low_complexity 1 24 0 590 283 64 11 chr1 85776644 85776831 -156887522 - MIR SINE MIR -7 255 59 2469 57 3 0 chr1 85777974 85778275 -156886078 - AluY SINE Alu -8 303 2 513 310 19 7 chr1 85778932 85779087 -156885266 - MIR3 SINE MIR -1 207 51 351 243 84 9 chr1 85779194 85779301 -156885052 + L2 LINE L2 3199 3313 0 286 274 78 10 chr1 85781867 85781969 -156882384 - L2 LINE L2 -215 3057 2949 415 310 80 11 chr1 85782132 85782319 -156882034 - MIR SINE MIR -55 207 8 342 239 0 0 chr1 85782393 85782460 -156881893 + L2 LINE L2 3201 3267 -5 2266 116 42 94 chr1 85782803 85783251 -156881102 + MER61B LTR ERV1 1 425 0 21 71 0 0 chr1 85783948 85783990 -156880363 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr1 85784393 85784435 -156879918 + AT_rich Low_complexity Low_complexity 1 42 0 538 59 0 82 chr1 85784709 85784794 -156879559 - MADE1 DNA Mariner -2 78 1 24 0 0 0 chr1 85785397 85785421 -156878932 + AT_rich Low_complexity Low_complexity 1 24 0 1636 267 139 31 chr1 85786065 85786874 -156877479 + L2 LINE L2 2407 3313 0 2549 58 0 0 chr1 85787291 85787600 -156876753 - AluY SINE Alu -2 309 1 277 206 30 121 chr1 85787728 85787893 -156876460 + L2 LINE L2 3113 3262 -51 382 308 40 72 chr1 85790079 85790329 -156874024 - L1M2 LINE L1 -6056 793 552 376 311 61 14 chr1 85793094 85793242 -156871111 + MIR SINE MIR 20 174 -88 218 352 47 99 chr1 85793929 85794162 -156870191 - L2 LINE L2 -15 3257 3037 635 204 33 20 chr1 85794179 85794331 -156870022 - MIR SINE MIR -6 256 103 2093 145 0 0 chr1 85794624 85794913 -156869440 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr1 85794919 85794941 -156869412 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 2826 119 12 2 chr1 85795652 85796082 -156868271 - MER57B LTR ERV1 0 434 1 1274 45 0 0 chr1 85797794 85797949 -156866404 + AluYa5 SINE Alu 154 308 -3 625 322 62 72 chr1 85798830 85799249 -156865104 - L2 LINE L2 -15 3257 2843 385 299 126 60 chr1 85799282 85799616 -156864737 + L2 LINE L2 2438 2793 -521 835 342 43 9 chr1 85799717 85800062 -156864291 - L2 LINE L2 -2 3311 2955 555 292 82 0 chr1 85800064 85800259 -156864094 - L2 LINE L2 -646 2668 2458 309 283 0 0 chr1 85801385 85801445 -156862908 + MER91B DNA MER1_type 4 63 -127 891 243 67 5 chr1 85801510 85801720 -156862633 + MER58A DNA MER1_type 1 223 -1 536 148 79 0 chr1 85802381 85802482 -156861871 + FLAM_A SINE Alu 24 132 -10 21 0 0 0 chr1 85802558 85802579 -156861774 + AT_rich Low_complexity Low_complexity 1 21 0 1594 139 45 4 chr1 85802850 85803094 -156861259 + AluJo SINE Alu 46 299 -13 1111 180 4 4 chr1 85804840 85805068 -156859285 - L1 LINE L1 -1137 5009 4782 24 53 0 0 chr1 85806496 85806534 -156857819 + AT_rich Low_complexity Low_complexity 1 38 0 1657 137 0 100 chr1 85806580 85806901 -156857452 + AluJb SINE Alu 1 289 -23 216 283 0 0 chr1 85807059 85807112 -156857241 + (CATA)n Simple_repeat Simple_repeat 2 54 0 497 248 55 40 chr1 85807153 85807427 -156856926 - L1MC/D LINE L1 -2274 5534 5257 1029 241 104 3 chr1 85808635 85808942 -156855411 - MER21B LTR ERV1 -60 803 466 321 271 72 10 chr1 85809360 85809507 -156854846 - MLT1J2 LTR MaLR -244 202 48 498 179 0 21 chr1 85810012 85810107 -156854246 - AluJo SINE Alu -14 298 206 805 187 7 20 chr1 85810107 85810257 -156854096 - AluJo SINE Alu -164 148 1 392 158 26 0 chr1 85810474 85810550 -156853803 - L1PB4 LINE L1 -4 6152 6075 2295 185 34 4 chr1 85811289 85811797 -156852556 - Charlie1b DNA MER1_type 0 523 1 6696 116 24 22 chr1 85811922 85812454 -156851899 - L1MA1 LINE L1 0 7721 7191 2288 113 3 0 chr1 85812454 85812763 -156851590 - AluSp SINE Alu -3 310 1 6696 116 24 22 chr1 85812763 85814150 -156850203 - L1MA1 LINE L1 -530 7191 5807 6672 193 17 31 chr1 85814146 85815791 -156848562 - L1MA1 LINE L1 -2001 5564 3943 * 1184 215 33 4 chr1 85815784 85816058 -156848295 - L1MA1 LINE L1 -7267 298 17 * 348 274 125 12 chr1 85816086 85816254 -156848099 - MLT1J LTR MaLR -324 187 1 698 72 21 0 chr1 85816420 85816517 -156847836 + AluY SINE Alu 205 303 -8 1490 164 0 0 chr1 85816818 85817038 -156847315 + AluJb SINE Alu 74 293 -19 1707 106 15 29 chr1 85817038 85817312 -156847041 + L1PA10 LINE L1 5895 6164 -4 261 283 97 44 chr1 85817746 85818432 -156845921 - L1P4 LINE L1 -735 5431 4672 2460 77 0 6 chr1 85818432 85818744 -156845609 - AluY SINE Alu -1 310 1 261 283 97 44 chr1 85818744 85819052 -156845301 - L1P4 LINE L1 -1494 4672 4382 460 333 42 0 chr1 85819466 85819655 -156844698 + MIR SINE MIR 66 262 0 186 278 111 22 chr1 85820157 85820247 -156844106 - MIR SINE MIR -6 256 159 2164 129 7 0 chr1 85820396 85820698 -156843655 + AluSx SINE Alu 1 304 -8 348 261 75 35 chr1 85821279 85821413 -156842940 - MIR SINE MIR -65 143 19 338 251 205 46 chr1 85821419 85821692 -156842661 + Charlie8 DNA MER1_type 3 1396 -1021 552 302 44 52 chr1 85822102 85822354 -156841999 - MIR SINE MIR -1 261 12 1560 86 35 27 chr1 85822572 85822828 -156841525 - L1MA5A LINE L1 -4 6293 6036 259 301 12 12 chr1 85822971 85823054 -156841299 - L2 LINE L2 -1 3312 3230 257 181 207 21 chr1 85823433 85823626 -156840727 - Charlie7 DNA MER1_type -125 2487 2259 397 234 32 57 chr1 85823775 85823933 -156840420 - Charlie7 DNA MER1_type -2446 166 13 21 0 0 0 chr1 85824784 85824805 -156839548 + AT_rich Low_complexity Low_complexity 1 21 0 1112 252 96 58 chr1 85825013 85825545 -156838808 - MLT1F1 LTR MaLR -15 552 1 190 380 16 8 chr1 85825680 85825801 -156838552 + L2 LINE L2 2625 2746 -568 251 314 0 39 chr1 85825846 85825948 -156838405 - MER5A DNA MER1_type -26 163 66 * 265 292 21 52 chr1 85825864 85825960 -156838393 + MER5A DNA MER1_type 55 147 -42 2222 141 91 10 chr1 85826132 85826528 -156837825 - MSTA LTR MaLR 0 428 1 958 301 52 34 chr1 85826960 85827455 -156836898 - LTR33 LTR ERVL -7 514 11 2279 122 27 14 chr1 85828016 85828384 -156835969 - THE1C LTR MaLR 0 375 3 1434 234 65 34 chr1 85828460 85828527 -156835826 + L1M4 LINE L1 2230 2293 -3853 2111 127 3 10 chr1 85828527 85828818 -156835535 + AluSx SINE Alu 1 289 -23 1434 234 65 34 chr1 85828818 85829250 -156835103 + L1M4 LINE L1 2293 2748 -3398 2098 105 10 14 chr1 85829250 85829546 -156834807 + AluSx SINE Alu 1 295 -17 1434 234 65 34 chr1 85829546 85829571 -156834782 + L1M4 LINE L1 2748 2771 -3375 1360 199 32 78 chr1 85829591 85830053 -156834300 + L1M4 LINE L1 3910 4350 -1796 455 312 43 7 chr1 85830676 85830814 -156833539 - MIR3 SINE MIR -63 145 3 2047 133 0 13 chr1 85831034 85831350 -156833003 - AluSx SINE Alu 0 312 1 231 271 0 0 chr1 85831806 85831854 -156832499 + (TG)n Simple_repeat Simple_repeat 2 49 0 330 26 0 0 chr1 85832374 85832413 -156831940 + (TG)n Simple_repeat Simple_repeat 2 40 0 339 283 42 25 chr1 85832495 85832615 -156831738 + MER117 DNA MER1_type 5 126 -71 1781 105 0 105 chr1 85833039 85833363 -156830990 - AluSg SINE Alu -20 290 1 415 299 47 8 chr1 85833752 85833879 -156830474 + L2 LINE L2 3136 3267 -5 221 343 0 0 chr1 85834943 85835010 -156829343 + L3 LINE CR1 1510 1576 -1 1702 171 3 16 chr1 85835163 85835467 -156828886 + AluJo SINE Alu 1 300 -12 270 0 0 0 chr1 85836374 85836404 -156827949 + (TGG)n Simple_repeat Simple_repeat 3 32 0 436 274 137 79 chr1 85836971 85837365 -156826988 - L1ME4a LINE L1 -12 6109 5693 1703 165 7 3 chr1 85837439 85837742 -156826611 + AluJo SINE Alu 1 304 -8 384 284 76 42 chr1 85837752 85838016 -156826337 - L1ME4a LINE L1 -2252 5556 5284 417 343 121 22 chr1 85838152 85838467 -156825886 - L1ME4a LINE L1 -1039 5107 4762 1946 127 0 7 chr1 85838559 85838843 -156825510 + AluSx SINE Alu 1 282 -30 227 313 111 14 chr1 85839546 85839690 -156824663 + MIR3 SINE MIR 33 190 -18 205 119 48 0 chr1 85840801 85840843 -156823510 + G-rich Low_complexity Low_complexity 4 47 0 983 94 0 63 chr1 85845710 85846092 -156818261 + (CACCAT)n Simple_repeat Simple_repeat 1 359 0 234 128 0 0 chr1 85846127 85846166 -156818187 + (CCA)n Simple_repeat Simple_repeat 2 40 0 214 325 158 0 chr1 85846173 85846287 -156818066 - MIR SINE MIR -13 249 118 192 294 44 0 chr1 85847227 85847295 -156817058 - L2 LINE L2 -9 3304 3234 391 279 54 0 chr1 85848065 85848194 -156816159 + L2 LINE L2 3137 3272 0 242 135 0 77 chr1 85848194 85848246 -156816107 + L2 LINE L2 3132 3179 -93 1999 186 28 79 chr1 85848629 85849160 -156815193 + MLT1D LTR MaLR 1 504 -1 1938 99 34 14 chr1 85851791 85852085 -156812268 + AluSg SINE Alu 1 300 -10 440 266 63 19 chr1 85852218 85852376 -156811977 + MIR SINE MIR 47 211 -51 893 227 32 19 chr1 85852894 85853110 -156811243 - MIR SINE MIR -28 234 16 184 269 8 115 chr1 85853240 85853370 -156810983 - MIR SINE MIR -71 191 76 617 204 33 20 chr1 85853917 85854069 -156810284 - MIR SINE MIR -6 256 103 1863 143 0 7 chr1 85854368 85854662 -156809691 + AluSx SINE Alu 7 298 -14 1814 206 24 12 chr1 85854685 85855108 -156809245 + L1MB8 LINE L1 5751 6178 0 285 268 0 0 chr1 85855941 85856079 -156808274 + (CA)n Simple_repeat Simple_repeat 2 139 0 2647 159 2 15 chr1 85857540 85858017 -156806336 + L1 LINE L1 4699 5169 -977 193 308 26 13 chr1 85859341 85859419 -156804934 - L2 LINE L2 -16 3256 3178 198 291 76 13 chr1 85860288 85860367 -156803986 + MIR3 SINE MIR 104 187 -21 2120 99 24 0 chr1 85860755 85861047 -156803306 - AluSc SINE Alu -10 299 1 2244 105 0 0 chr1 85862011 85862315 -156802038 - AluSx SINE Alu 0 312 9 361 232 40 73 chr1 85862909 85863060 -156801293 - L2 LINE L2 -84 3229 3084 368 302 132 15 chr1 85863082 85863290 -156801063 + MIR SINE MIR 16 243 -19 2187 71 44 3 chr1 85863338 85863633 -156800720 + AluY SINE Alu 1 307 -4 3655 156 43 84 chr1 85863772 85864695 -156799658 - Charlie1 DNA MER1_type 0 2761 1877 347 122 54 189 chr1 85864699 85864847 -156799506 - L1M4 LINE L1 -3309 2837 2710 224 359 54 12 chr1 85865185 85865352 -156799001 + MIR SINE MIR 24 197 -65 225 319 121 14 chr1 85865355 85865496 -156798857 + MIR3 SINE MIR 17 172 -36 * 302 282 69 12 chr1 85865488 85865608 -156798745 - MIR SINE MIR -68 140 22 407 316 16 1 chr1 85866374 85866519 -156797834 + MIR SINE MIR 9 153 -62 335 214 32 71 chr1 85866644 85866770 -156797583 + MIR SINE MIR 94 214 -48 375 216 0 0 chr1 85867038 85867112 -156797241 + MIR SINE MIR 89 162 -100 647 229 13 6 chr1 85867244 85867401 -156796952 - MER31-int LTR ERV1 -722 4214 4057 670 195 0 0 chr1 85867417 85867530 -156796823 + FLAM_A SINE Alu 12 124 -18 251 200 52 9 chr1 85867535 85867585 -156796768 + (TA)n Simple_repeat Simple_repeat 1 47 -73 1992 117 0 3 chr1 85867585 85867875 -156796478 + AluSx SINE Alu 1 289 -23 251 200 52 9 chr1 85867875 85867939 -156796414 + (TA)n Simple_repeat Simple_repeat 47 120 0 720 250 188 5 chr1 85869880 85870088 -156794265 - MIR SINE MIR -15 247 2 204 40 0 0 chr1 85871535 85871560 -156792793 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr1 85872128 85872158 -156792195 + AT_rich Low_complexity Low_complexity 1 30 0 200 179 60 60 chr1 85873310 85873394 -156790959 + L2 LINE L2 2895 2978 -294 523 337 180 11 chr1 85874546 85875202 -156789151 - L2 LINE L2 -43 3270 2525 21 0 0 0 chr1 85875818 85875839 -156788514 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 85876599 85876620 -156787733 + AT_rich Low_complexity Low_complexity 1 21 0 349 153 139 14 chr1 85877894 85877966 -156786387 + LTR50 LTR ERVL 1 81 -714 312 280 98 6 chr1 85878172 85878398 -156785955 + LTR50 LTR ERVL 523 788 -7 1903 115 19 19 chr1 85878530 85878842 -156785511 - AluSx SINE Alu 0 312 1 363 251 149 29 chr1 85881456 85881631 -156782722 - MLT1J LTR MaLR -309 202 7 308 245 53 0 chr1 85881642 85881736 -156782617 - L1M4 LINE L1 -3085 3061 2963 330 285 87 58 chr1 85881738 85881945 -156782408 - L1MC5 LINE L1 -30 7931 7719 977 221 33 14 chr1 85881968 85882244 -156782109 - L1ME2 LINE L1 -10 6154 5874 210 37 0 0 chr1 85882250 85882277 -156782076 + (TA)n Simple_repeat Simple_repeat 1 27 0 563 127 45 82 chr1 85882288 85882422 -156781931 - L1PB3 LINE L1 -2 6152 6024 1199 132 45 59 chr1 85882426 85882715 -156781638 - L1ME2 LINE L1 -259 5905 5621 2148 122 7 0 chr1 85882840 85883143 -156781210 - AluSg1 SINE Alu -4 305 1 1130 283 119 0 chr1 85883143 85883563 -156780790 - L1MEc LINE L1 -5891 505 36 1655 196 53 95 chr1 85883563 85883809 -156780544 - Charlie1a DNA MER1_type -2217 544 289 2234 109 7 0 chr1 85883809 85884103 -156780250 + AluSq SINE Alu 1 296 -17 1655 196 53 95 chr1 85884103 85884423 -156779930 - Charlie1a DNA MER1_type -2472 289 2 376 310 66 19 chr1 85884452 85884723 -156779630 + L1ME3A LINE L1 5679 5962 -208 433 346 31 0 chr1 85885175 85885334 -156779019 - MIR SINE MIR -92 170 7 241 340 19 9 chr1 85886063 85886169 -156778184 - MIR SINE MIR -73 135 29 2132 132 6 6 chr1 85886493 85886804 -156777549 - AluSx SINE Alu 0 312 2 315 267 0 0 chr1 85887085 85887171 -156777182 + L1MD2 LINE L1 5803 5888 -471 2047 117 81 119 chr1 85887265 85887710 -156776643 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr1 85887818 85887842 -156776511 + AT_rich Low_complexity Low_complexity 1 24 0 209 265 0 0 chr1 85888354 85888403 -156775950 - L3 LINE CR1 -1 1576 1528 615 282 105 36 chr1 85889788 85889844 -156774509 - L2 LINE L2 -609 2705 2654 2105 136 16 10 chr1 85889844 85890153 -156774200 + AluSx SINE Alu 1 311 -1 615 282 105 36 chr1 85890153 85890429 -156773924 - L2 LINE L2 -660 2654 2350 1342 263 89 15 chr1 85890559 85891640 -156772713 + L1MDa LINE L1 1773 2942 -3598 2419 183 61 7 chr1 85891657 85892227 -156772126 + L1M4 LINE L1 4398 4998 -1148 1776 126 159 6 chr1 85892227 85892561 -156771792 + MSTA LTR MaLR 1 385 -43 724 191 34 45 chr1 85892732 85892827 -156771526 + MER5B DNA MER1_type 3 97 -81 2478 80 0 7 chr1 85892827 85893128 -156771225 + AluSx SINE Alu 1 299 -13 724 191 34 45 chr1 85893128 85893210 -156771143 + MER5B DNA MER1_type 97 178 0 27 49 0 0 chr1 85895089 85895130 -156769223 + AT_rich Low_complexity Low_complexity 1 41 0 206 173 26 0 chr1 85895285 85895329 -156769024 - MIR SINE MIR -63 145 101 373 294 84 105 chr1 85895803 85896445 -156767908 + L2 LINE L2 2635 3272 0 2291 119 3 0 chr1 85897651 85897953 -156766400 - AluSx SINE Alu -9 303 1 2420 89 0 0 chr1 85898163 85898467 -156765886 + AluY SINE Alu 1 304 -7 366 123 0 0 chr1 85899429 85899486 -156764867 + (CA)n Simple_repeat Simple_repeat 2 58 0 1193 222 86 26 chr1 85900398 85900781 -156763572 + L1M4 LINE L1 4200 4605 -1541 1300 193 40 0 chr1 85900783 85901058 -156763295 + L1M4 LINE L1 4630 4915 -1231 1321 246 7 3 chr1 85901161 85901466 -156762887 - MER119 DNA MER1_type -276 307 2 368 338 53 13 chr1 85902231 85902459 -156761894 + L2 LINE L2 2863 3099 -214 24 0 0 0 chr1 85902620 85902644 -156761709 + AT_rich Low_complexity Low_complexity 1 24 0 2238 120 0 22 chr1 85902784 85902965 -156761388 - AluSg SINE Alu 0 310 127 213 65 0 0 chr1 85902965 85902996 -156761357 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2329 60 3 3 chr1 85902996 85903279 -156761074 - AluY SINE Alu -28 283 1 2238 120 0 22 chr1 85903279 85903413 -156760940 - AluSg SINE Alu -181 129 1 193 97 0 0 chr1 85903708 85903739 -156760614 + L2 LINE L2 2929 2959 -313 934 206 0 0 chr1 85904627 85904782 -156759571 - FRAM SINE Alu -11 155 1 2303 101 3 3 chr1 85904791 85905097 -156759256 - AluSg SINE Alu -2 308 3 1060 324 91 22 chr1 85905351 85905811 -156758542 - L3 LINE CR1 -805 772 281 1119 182 48 0 chr1 85905912 85906121 -156758232 - MER20 DNA MER1_type 0 219 1 240 226 85 9 chr1 85907524 85907630 -156756723 - L1ME3 LINE L1 -95 6067 5954 248 196 34 80 chr1 85907657 85907670 -156756683 - L1MD3 LINE L1 0 8042 8030 2171 137 0 13 chr1 85907670 85907976 -156756377 - AluSx SINE Alu -10 302 1 248 196 34 80 chr1 85907976 85908099 -156756254 - L1MD3 LINE L1 -12 8030 7904 207 100 0 0 chr1 85909493 85909523 -156754830 + (A)n Simple_repeat Simple_repeat 1 30 0 522 259 184 4 chr1 85910128 85910383 -156753970 - L2 LINE L2 -3 3310 3010 2233 108 10 3 chr1 85911483 85911788 -156752565 - AluSx SINE Alu -5 307 1 26 30 0 0 chr1 85911822 85911855 -156752498 + AT_rich Low_complexity Low_complexity 1 33 0 2617 58 0 3 chr1 85911885 85912193 -156752160 - AluY SINE Alu -4 307 1 242 325 0 38 chr1 85912765 85912845 -156751508 - MIR SINE MIR -70 192 116 610 281 45 11 chr1 85912878 85913056 -156751297 - MIR SINE MIR -30 232 49 475 172 11 11 chr1 85913811 85913898 -156750455 - MER74B LTR ERVL -453 169 83 1620 236 64 79 chr1 85913916 85914648 -156749705 - L1ME LINE L1 -5348 722 2 390 316 61 27 chr1 85914848 85915177 -156749176 - L1MEd LINE L1 -3382 2747 2408 484 265 46 81 chr1 85915246 85915395 -156748958 - L1MEd LINE L1 -4888 1231 1093 2398 84 10 3 chr1 85915395 85915706 -156748647 - AluSq SINE Alu 0 313 1 484 265 46 81 chr1 85915706 85915816 -156748537 - L1MEd LINE L1 -5026 1093 981 1774 106 37 16 chr1 85915826 85916072 -156748281 - AluSx SINE Alu -13 299 49 218 236 135 47 chr1 85916139 85916287 -156748066 + L2 LINE L2 11 171 -3143 377 343 14 21 chr1 85916368 85916511 -156747842 + L2 LINE L2 3172 3313 0 880 131 56 0 chr1 85916652 85916812 -156747541 - L1MB3 LINE L1 -1 6182 6014 806 146 42 0 chr1 85916987 85917131 -156747222 - MSTA LTR MaLR 0 428 279 1709 174 42 0 chr1 85917132 85917419 -156746934 - AluJb SINE Alu -13 299 1 199 238 0 0 chr1 85918610 85918652 -156745701 - L3 LINE CR1 -1 1576 1535 198 240 104 31 chr1 85920701 85920797 -156743556 + MIR3 SINE MIR 88 190 -18 297 250 10 31 chr1 85921203 85921299 -156743054 + LTR67 LTR ERVL 459 552 -5 861 211 29 29 chr1 85921453 85921657 -156742696 + MIR SINE MIR 39 242 -20 465 311 61 95 chr1 85921712 85921976 -156742377 - L2 LINE L2 -18 3254 3000 616 246 120 10 chr1 85922362 85922565 -156741788 + MIR SINE MIR 25 250 -12 4279 164 27 44 chr1 85923740 85924484 -156739869 + L1MB8 LINE L1 4740 5495 -683 1627 176 27 23 chr1 85924484 85924785 -156739568 + AluJo SINE Alu 11 312 0 4279 164 27 44 chr1 85924785 85925320 -156739033 + L1MB8 LINE L1 5495 5983 -195 1966 135 35 0 chr1 85925320 85925608 -156738745 + AluJb SINE Alu 1 298 -14 4279 164 27 44 chr1 85925608 85925801 -156738552 + L1MB8 LINE L1 5983 6178 0 474 229 97 21 chr1 85925803 85925947 -156738406 - L2 LINE L2 0 3313 3159 978 150 30 6 chr1 85925954 85926121 -156738232 - Tigger5 DNA MER2_type 0 2323 2153 651 155 17 9 chr1 85926113 85926229 -156738124 - Tigger5 DNA MER2_type -2206 117 1 * 472 230 140 90 chr1 85926229 85926637 -156737716 - L2 LINE L2 -160 3153 2708 2348 178 52 14 chr1 85926637 85927089 -156737264 + L1MB3 LINE L1 5682 6155 -28 2527 77 3 3 chr1 85927089 85927399 -156736954 - AluSg SINE Alu 0 310 1 2348 178 52 14 chr1 85927399 85927428 -156736925 + L1MB3 LINE L1 6155 6181 -2 472 230 140 90 chr1 85927428 85927518 -156736835 - L2 LINE L2 -605 2708 2624 204 254 0 0 chr1 85927741 85927800 -156736553 + GA-rich Low_complexity Low_complexity 4 62 0 1952 126 23 23 chr1 85928277 85928578 -156735775 - AluJo SINE Alu 0 312 12 30 45 0 0 chr1 85928698 85928742 -156735611 + AT_rich Low_complexity Low_complexity 1 44 0 442 258 189 41 chr1 85928912 85929350 -156735003 + MLT1G LTR MaLR 65 567 0 218 235 73 0 chr1 85929360 85929428 -156734925 + MIR SINE MIR 73 145 -117 2451 107 19 25 chr1 85929717 85930083 -156734270 + THE1B LTR MaLR 1 364 0 11600 97 11 15 chr1 85930083 85931670 -156732683 + THE1B-int LTR MaLR 1 1580 0 2423 108 28 19 chr1 85931670 85932031 -156732322 + THE1B LTR MaLR 1 364 0 490 262 68 104 chr1 85932685 85932906 -156731447 - Charlie8 DNA MER1_type -2146 271 59 1565 120 5 0 chr1 85933454 85933671 -156730682 - AluSg/x SINE Alu -13 299 82 1979 120 52 38 chr1 85934697 85935042 -156729311 - THE1B LTR MaLR -12 420 1 2124 152 3 44 chr1 85935395 85935758 -156728595 - MER7A DNA MER2_type 0 346 1 304 327 19 0 chr1 85937443 85937547 -156726806 + MIR SINE MIR 124 229 -33 201 329 198 6 chr1 85937562 85937729 -156726624 - MIR SINE MIR -12 250 52 195 279 29 0 chr1 85937824 85937892 -156726461 + L2 LINE L2 3203 3272 0 877 151 0 0 chr1 85938104 85938230 -156726123 + FLAM_C SINE Alu 1 126 -17 615 298 120 64 chr1 85938249 85938993 -156725360 - L2 LINE L2 -1 3271 2497 2602 166 76 14 chr1 85939013 85939563 -156724790 + L1MC3 LINE L1 7187 7770 -15 2182 114 0 0 chr1 85939670 85939959 -156724394 - AluSq SINE Alu -24 289 1 2916 194 4 0 chr1 85939960 85940486 -156723867 - L1MB1 LINE L1 -39 6129 5602 286 292 258 25 chr1 85943105 85943659 -156720694 + L2 LINE L2 2230 2912 -402 * 508 304 62 65 chr1 85943658 85944076 -156720277 + L2 LINE L2 2855 3271 -1 207 342 43 17 chr1 85944115 85944232 -156720121 + L2 LINE L2 3143 3262 -10 2355 85 10 0 chr1 85946452 85946757 -156717596 + AluSq SINE Alu 1 308 -5 1831 238 152 38 chr1 85946757 85947638 -156716715 + L1MEc LINE L1 743 1724 -4672 2037 105 27 3 chr1 85947962 85948256 -156716097 + AluSg SINE Alu 1 301 -9 821 215 100 6 chr1 85948553 85948855 -156715498 - MSTD LTR MaLR 0 396 1 417 239 6 132 chr1 85949100 85949176 -156715177 - MER5A DNA MER1_type -47 142 95 689 186 34 0 chr1 85949176 85949294 -156715059 - FLAM_A SINE Alu -11 122 1 417 239 6 132 chr1 85949294 85949376 -156714977 - MER5A DNA MER1_type -94 95 4 4217 245 79 51 chr1 85949886 85951679 -156712674 - L1MB1 LINE L1 -905 5241 3400 967 179 0 6 chr1 85951680 85951836 -156712517 - AluJb SINE Alu -18 294 140 415 266 90 38 chr1 85951840 85952205 -156712148 - L1MB1 LINE L1 -2740 3406 3023 29 0 0 0 chr1 85952215 85952244 -156712109 + AT_rich Low_complexity Low_complexity 1 29 0 1144 273 71 27 chr1 85952254 85952329 -156712024 - L1MB1 LINE L1 -3245 2901 2831 341 57 0 19 chr1 85952329 85952382 -156711971 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 1144 273 71 27 chr1 85952382 85952928 -156711425 - L1MB1 LINE L1 -3315 2831 2253 1188 279 101 49 chr1 85953063 85953343 -156711010 - L1MEc LINE L1 -841 1735 1471 1101 164 144 0 chr1 85953343 85953538 -156710815 + MER58A DNA MER1_type 1 223 -1 1188 279 101 49 chr1 85953538 85954386 -156709967 - L1MEc LINE L1 -1105 1471 1197 1111 176 26 0 chr1 85955549 85955742 -156708611 - MLT1A1 LTR MaLR -48 317 120 3947 94 27 30 chr1 85955742 85955822 -156708531 - L1M1 LINE L1 -4147 3418 3339 2425 85 0 0 chr1 85955822 85956116 -156708237 - AluSc SINE Alu -15 294 1 3947 94 27 30 chr1 85956116 85956661 -156707692 - L1M1 LINE L1 -4226 3339 2795 314 134 90 15 chr1 85956788 85956855 -156707498 + L1MC1 LINE L1 6262 6333 0 29 70 0 0 chr1 85957220 85957277 -156707076 + AT_rich Low_complexity Low_complexity 1 57 0 510 321 0 8 chr1 85957489 85957623 -156706730 - MIR SINE MIR -116 146 14 2230 120 0 3 chr1 85957690 85957998 -156706355 - AluSg SINE Alu -3 307 1 340 369 69 39 chr1 85958007 85958527 -156705826 - L2 LINE L2 -778 2536 2001 462 309 103 27 chr1 85958529 85958752 -156705601 - MIR SINE MIR -8 254 15 349 233 39 94 chr1 85958822 85959002 -156705351 + Charlie7 DNA MER1_type 2443 2612 0 460 285 105 53 chr1 85959210 85959380 -156704973 + MIR SINE MIR 11 197 -65 1976 106 87 0 chr1 85959380 85959655 -156704698 - AluSg SINE Alu -11 299 1 460 285 105 53 chr1 85959655 85959712 -156704641 + MIR SINE MIR 197 250 -12 21 71 0 0 chr1 85960478 85960520 -156703833 + AT_rich Low_complexity Low_complexity 1 42 0 2163 107 0 3 chr1 85961623 85961912 -156702441 - AluSg SINE Alu -2 308 21 223 295 141 0 chr1 85962611 85962689 -156701664 - L2 LINE L2 0 3272 3184 180 309 60 48 chr1 85962688 85962772 -156701581 + L2 LINE L2 3210 3294 -19 * 219 299 30 15 chr1 85962898 85962965 -156701388 - L2 LINE L2 -37 3235 3168 381 291 58 41 chr1 85963074 85963246 -156701107 + MIR SINE MIR 31 205 -57 717 257 60 9 chr1 85963292 85963510 -156700843 + MIR SINE MIR 34 262 0 23 33 0 0 chr1 85964467 85964497 -156699856 + AT_rich Low_complexity Low_complexity 1 30 0 815 109 0 17 chr1 85964498 85964617 -156699736 - L1PB1 LINE L1 -44 6107 5991 2445 144 13 10 chr1 85965550 85965940 -156698413 - Tigger2 DNA MER2_type 0 2718 2328 1674 181 3 3 chr1 85966238 85966531 -156697822 - AluJb SINE Alu -19 293 1 1123 65 129 0 chr1 85968045 85968200 -156696153 - L1PA4 LINE L1 -200 5955 5781 708 76 0 0 chr1 85968172 85968264 -156696089 + L1PA5 LINE L1 6060 6151 -3 * 255 93 0 0 chr1 85968479 85968522 -156695831 + (CA)n Simple_repeat Simple_repeat 2 44 0 354 0 0 0 chr1 85968945 85968983 -156695370 + L1PA15 LINE L1 5912 5949 -216 409 61 0 30 chr1 85968984 85969050 -156695303 + L1PA15 LINE L1 6102 6165 0 472 287 92 31 chr1 85969059 85969254 -156695099 - MIR SINE MIR -50 212 6 573 157 0 0 chr1 85970857 85970940 -156693413 + AluJb SINE Alu 2 84 -228 1553 148 0 4 chr1 85971043 85971279 -156693074 + AluJb SINE Alu 64 298 -14 346 308 45 38 chr1 85971293 85971426 -156692927 - MLT1J LTR MaLR -54 457 324 2428 79 7 0 chr1 85971793 85972096 -156692257 - AluSq SINE Alu -8 305 1 1261 251 27 21 chr1 85972480 85972814 -156691539 - MER93a LTR ERV1 0 402 67 25 0 0 0 chr1 85972912 85972937 -156691416 + AT_rich Low_complexity Low_complexity 1 25 0 2248 117 0 0 chr1 85973064 85973362 -156690991 + AluSx SINE Alu 1 298 -14 381 93 0 0 chr1 85975737 85975791 -156688562 + (CA)n Simple_repeat Simple_repeat 2 55 0 484 265 26 0 chr1 85976079 85976196 -156688157 + L2 LINE L2 3189 3308 -5 474 301 78 27 chr1 85976323 85976542 -156687811 + MIR SINE MIR 12 241 -21 303 306 57 0 chr1 85977151 85977275 -156687078 + MIR SINE MIR 83 213 -49 243 0 0 0 chr1 85977861 85977888 -156686465 + (TG)n Simple_repeat Simple_repeat 1 27 0 237 33 0 0 chr1 85977887 85977917 -156686436 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 431 222 168 15 chr1 85977959 85978162 -156686191 - L1ME4a LINE L1 -49 6072 5839 225 209 0 0 chr1 85978794 85978837 -156685516 + A-rich Low_complexity Low_complexity 1 43 0 2410 78 3 0 chr1 85978842 85979138 -156685215 + AluY SINE Alu 1 297 -14 337 315 65 60 chr1 85980085 85980485 -156683868 - L2 LINE L2 -1203 2111 1710 203 300 170 0 chr1 85980713 85980813 -156683540 - L2 LINE L2 -60 3212 3096 413 325 106 5 chr1 85981143 85981331 -156683022 + MIR SINE MIR 2 208 -54 2344 134 11 35 chr1 85981442 85981815 -156682538 - THE1B LTR MaLR 0 364 1 458 246 44 77 chr1 85981824 85982007 -156682346 + MIR SINE MIR 80 256 -6 656 271 18 6 chr1 85982656 85982826 -156681527 + L1ME4a LINE L1 5530 5701 -420 2405 260 70 22 chr1 85982831 85983930 -156680423 + L2 LINE L2 2167 3313 0 333 194 108 8 chr1 85983932 85984061 -156680292 + L1ME4a LINE L1 5712 5853 -268 6142 141 16 2 chr1 85984105 85985203 -156679150 - L1MA5A LINE L1 0 6297 5186 439 181 0 0 chr1 85985214 85985286 -156679067 - FRAM SINE Alu -46 130 59 2138 135 21 12 chr1 85985348 85985682 -156678671 - MER1B DNA MER1_type 0 337 1 812 67 0 0 chr1 85985824 85985929 -156678424 + L1PB1 LINE L1 6045 6149 -2 452 305 46 13 chr1 85986071 85986222 -156678131 + MIR SINE MIR 92 247 -15 301 275 36 46 chr1 85986321 85986437 -156677916 - MIR SINE MIR -95 113 3 502 92 0 133 chr1 85987035 85987155 -156677198 - Tigger4(Zombi) DNA MER2_type -2 2729 2626 246 119 51 42 chr1 85987255 85987373 -156676980 + (TA)n Simple_repeat Simple_repeat 1 119 0 2411 77 6 0 chr1 85987377 85987700 -156676653 - Tigger4(Zombi) DNA MER2_type -145 2586 2262 661 114 78 9 chr1 85987698 85987837 -156676516 - Tigger4(Zombi) DNA MER2_type -2585 146 3 * 756 123 0 0 chr1 85988000 85988122 -156676231 + L1MA5A LINE L1 6176 6297 0 27 29 0 0 chr1 85988122 85988156 -156676197 + AT_rich Low_complexity Low_complexity 1 34 0 498 276 47 8 chr1 85988167 85988294 -156676059 - MIR SINE MIR -110 152 21 26 0 0 0 chr1 85989551 85989577 -156674776 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr1 85991763 85991798 -156672555 + (TG)n Simple_repeat Simple_repeat 2 36 0 821 281 90 12 chr1 85991805 85992207 -156672146 - L1ME4a LINE L1 -199 5922 5490 187 304 71 0 chr1 85992243 85992299 -156672054 - L3 LINE CR1 -8 1569 1510 2282 104 3 0 chr1 85992450 85992757 -156671596 + AluSx SINE Alu 1 308 -4 1415 207 4 4 chr1 85993585 85993846 -156670507 + AluJo SINE Alu 43 303 -9 598 253 33 22 chr1 85993984 85994166 -156670187 - MIR SINE MIR 0 262 79 360 306 83 44 chr1 85994794 85994974 -156669379 + MIR SINE MIR 6 192 -70 237 33 0 0 chr1 85995439 85995469 -156668884 + (A)n Simple_repeat Simple_repeat 1 30 0 1475 175 75 7 chr1 85995664 85995944 -156668409 + AluJb SINE Alu 1 299 -13 637 302 87 63 chr1 85996165 85996669 -156667684 + L2 LINE L2 2259 2774 -540 260 176 0 143 chr1 85997295 85997336 -156667017 + L1MEc LINE L1 1974 1997 -4399 2116 114 10 3 chr1 85997336 85997626 -156666727 - AluSp SINE Alu -21 292 1 260 176 0 143 chr1 85997626 85997675 -156666678 + L1MEc LINE L1 1997 2051 -4345 417 234 305 9 chr1 85999264 85999436 -156664917 - MIR SINE MIR 0 262 43 222 279 25 13 chr1 85999481 85999560 -156664793 - L2 LINE L2 -2 3311 3232 735 257 143 50 chr1 85999569 85999946 -156664407 - L2 LINE L2 -4 3268 2857 1081 222 105 41 chr1 86000073 86000416 -156663937 + MLT1A1 LTR MaLR 1 365 0 273 340 47 33 chr1 86000435 86000585 -156663768 - L2 LINE L2 0 3272 3121 28 29 0 0 chr1 86001216 86001251 -156663102 + AT_rich Low_complexity Low_complexity 1 35 0 1709 203 3 10 chr1 86001349 86001655 -156662698 - AluJo SINE Alu -8 304 1 301 310 16 47 chr1 86001692 86001821 -156662532 + MIR3 SINE MIR 71 195 -13 306 309 64 0 chr1 86003411 86003521 -156660832 - MIR SINE MIR -38 224 108 231 228 0 18 chr1 86003619 86003676 -156660677 + A-rich Low_complexity Low_complexity 4 59 0 266 241 51 51 chr1 86003929 86004008 -156660345 + MIR SINE MIR 34 112 -150 2382 53 0 0 chr1 86004152 86004464 -156659889 - AluY SINE Alu 0 312 1 262 328 23 29 chr1 86004616 86004790 -156659563 + HAL1 LINE L1 859 1031 -1476 466 204 162 74 chr1 86004846 86005062 -156659291 + HAL1 LINE L1 2263 2497 -10 22 0 0 0 chr1 86005062 86005084 -156659269 + AT_rich Low_complexity Low_complexity 1 22 0 2024 167 45 20 chr1 86005658 86006165 -156658188 - L1MA4A LINE L1 -34 6269 5690 224 30 30 0 chr1 86007567 86007600 -156656753 + (TTG)n Simple_repeat Simple_repeat 1 34 0 1994 164 0 0 chr1 86008685 86008983 -156655370 + AluJb SINE Alu 1 298 -14 186 256 0 0 chr1 86009074 86009113 -156655240 + L3 LINE CR1 1534 1572 -5 484 281 94 12 chr1 86010025 86010196 -156654157 - LTR16A1 LTR ERVL 0 457 273 403 209 43 61 chr1 86010236 86010351 -156654002 - LTR16A1 LTR ERVL -303 154 42 375 169 0 0 chr1 86010399 86010470 -156653883 + (TA)n Simple_repeat Simple_repeat 2 72 0 233 258 316 19 chr1 86011075 86011230 -156653123 - MIR SINE MIR 0 262 62 27 29 0 0 chr1 86012329 86012363 -156651990 + AT_rich Low_complexity Low_complexity 1 34 0 1220 149 0 77 chr1 86012363 86012584 -156651769 - AluJb SINE Alu -25 287 84 375 218 89 20 chr1 86013133 86013234 -156651119 - MIR SINE MIR -119 143 36 2249 117 0 3 chr1 86013349 86013658 -156650695 + AluSx SINE Alu 1 308 -4 337 298 167 0 chr1 86013960 86014074 -156650279 + L2 LINE L2 3140 3272 0 450 311 132 14 chr1 86016130 86016349 -156648004 + MIR SINE MIR 6 250 -12 1690 174 0 25 chr1 86017030 86017311 -156647042 + AluJo SINE Alu 1 274 -38 180 0 0 0 chr1 86017317 86017337 -156647016 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 200 214 0 0 chr1 86017589 86017631 -156646722 + A-rich Low_complexity Low_complexity 4 45 0 238 333 27 0 chr1 86018205 86018280 -156646073 + L2 LINE L2 3188 3264 -8 482 280 113 0 chr1 86019681 86019831 -156644522 + MIR SINE MIR 34 200 -62 232 267 0 0 chr1 86019875 86019920 -156644433 + L2 LINE L2 3210 3254 -18 207 0 0 0 chr1 86020351 86020374 -156643979 + (A)n Simple_repeat Simple_repeat 1 23 0 267 222 0 0 chr1 86021482 86021536 -156642817 - MIR3 SINE MIR -4 204 151 189 0 0 0 chr1 86021708 86021729 -156642624 + (TTA)n Simple_repeat Simple_repeat 2 22 0 8773 37 0 1 chr1 86021730 86023551 -156640802 - L1PA4 LINE L1 -17 6138 4319 658 198 102 40 chr1 86023623 86023800 -156640553 - MER20 DNA MER1_type -2 217 30 217 180 0 80 chr1 86024255 86024305 -156640048 + L2 LINE L2 3268 3313 0 383 305 162 0 chr1 86024584 86024751 -156639602 - MIR SINE MIR -32 230 37 1105 219 60 4 chr1 86025635 86025900 -156638453 + L1MEc LINE L1 127 406 -5990 2526 194 68 23 chr1 86026093 86026712 -156637641 + L1MEc LINE L1 440 1086 -5310 1192 233 25 9 chr1 86026710 86027050 -156637303 + L1ME1 LINE L1 5779 6284 -50 * 2398 127 8 0 chr1 86027052 86027422 -156636931 - L1PA16 LINE L1 -9 6157 5785 245 309 36 12 chr1 86027760 86027844 -156636509 + L2 LINE L2 3191 3276 -37 1144 192 149 19 chr1 86027927 86028250 -156636103 - MLT1A1 LTR MaLR 0 365 1 248 311 36 47 chr1 86028502 86028676 -156635677 + MIR SINE MIR 13 180 -61 1726 183 7 3 chr1 86029119 86029409 -156634944 + AluJb SINE Alu 6 296 -16 494 270 58 18 chr1 86029546 86029772 -156634581 - L1ME4a LINE L1 -238 5883 5649 208 200 20 20 chr1 86029840 86029890 -156634463 + L2 LINE L2 3263 3312 -1 242 352 105 46 chr1 86029922 86030226 -156634127 + L2 LINE L2 2890 3211 -61 661 170 0 0 chr1 86030870 86030976 -156633377 - L1M2a LINE L1 -7058 110 5 1649 154 18 11 chr1 86030980 86031265 -156633088 - MER65A LTR ERV1 -158 287 1 371 206 0 0 chr1 86031397 86031470 -156632883 - Tigger4(Zombi) DNA MER2_type 0 2731 2659 248 255 198 9 chr1 86031612 86031718 -156632635 + MIR SINE MIR 95 220 -42 441 0 0 0 chr1 86031895 86031944 -156632409 + (TG)n Simple_repeat Simple_repeat 2 50 0 32 26 0 0 chr1 86031985 86032024 -156632329 + AT_rich Low_complexity Low_complexity 1 39 0 865 246 24 55 chr1 86032033 86032362 -156631991 - L1MA9 LINE L1 -38 6274 5956 192 40 0 0 chr1 86032369 86032394 -156631959 + (TC)n Simple_repeat Simple_repeat 2 26 0 734 67 5 82 chr1 86032415 86032610 -156631743 + (TA)n Simple_repeat Simple_repeat 1 180 0 524 237 41 12 chr1 86032732 86032901 -156631452 - MER65A-int LTR ERV1 -6395 1725 1552 6378 202 45 61 chr1 86032902 86035543 -156628810 - MER65A-int LTR ERV1 -2366 2505 6 929 133 13 6 chr1 86035550 86035708 -156628645 - MER65A LTR ERV1 -6 439 281 2014 111 83 6 chr1 86035708 86036032 -156628321 - L1MA4 LINE L1 -6 6294 5946 6161 191 18 9 chr1 86036132 86036810 -156627543 - L1M2 LINE L1 -4176 2992 2322 2238 98 16 7 chr1 86036810 86037115 -156627238 - AluSx SINE Alu -4 308 1 6161 191 18 9 chr1 86037115 86038206 -156626147 - L1M2 LINE L1 -4846 2322 1216 3081 171 25 10 chr1 86038208 86038724 -156625629 - L1M2 LINE L1 -6540 628 105 2151 107 0 7 chr1 86038824 86039113 -156625240 - AluY SINE Alu -24 287 1 351 321 65 12 chr1 86039139 86039307 -156625046 + MIR SINE MIR 24 200 -62 553 282 107 41 chr1 86040058 86040470 -156623883 - MLT1L LTR MaLR -23 592 154 1095 143 11 48 chr1 86040532 86040721 -156623632 + AluJb SINE Alu 1 182 -130 1944 147 73 20 chr1 86040723 86041064 -156623289 - MLT1D LTR MaLR -146 359 1 955 142 28 28 chr1 86041137 86041313 -156623040 - AluJo SINE Alu 0 312 137 297 318 144 0 chr1 86041324 86041456 -156622897 - L3 LINE CR1 -33 1544 1394 287 257 0 0 chr1 86041732 86041802 -156622551 + MIR SINE MIR 183 252 -10 1708 193 13 7 chr1 86042728 86043034 -156621319 - AluJo SINE Alu -4 308 1 216 231 0 0 chr1 86043082 86043134 -156621219 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 197 65 32 0 chr1 86043253 86043284 -156621069 + (TA)n Simple_repeat Simple_repeat 2 33 0 359 106 9 53 chr1 86043596 86043709 -156620644 + (TA)n Simple_repeat Simple_repeat 1 108 0 673 139 16 78 chr1 86043709 86043838 -156620515 - AluJo SINE Alu -181 131 11 5043 186 46 13 chr1 86043868 86044562 -156619791 - L1MB3 LINE L1 -248 5935 5265 2299 99 0 0 chr1 86044562 86044855 -156619498 - AluSx SINE Alu -19 293 1 5043 186 46 13 chr1 86044855 86045666 -156618687 - L1MB3 LINE L1 -918 5265 4368 246 62 0 0 chr1 86045667 86045699 -156618654 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4942 180 30 25 chr1 86046965 86047887 -156616466 + MER52A LTR ERV1 548 1474 -281 5731 86 4 1 chr1 86047888 86048622 -156615731 + THE1B-int LTR MaLR 845 1580 0 775 134 9 0 chr1 86048622 86048734 -156615619 + THE1B LTR MaLR 1 113 -251 4618 63 10 5 chr1 86048734 86049333 -156615020 - THE1A-int LTR MaLR -978 602 1 292 100 0 0 chr1 86049333 86049373 -156614980 - THE1A LTR MaLR 0 355 316 190 206 261 33 chr1 86049450 86049542 -156614811 - MIR SINE MIR -9 253 141 471 248 33 25 chr1 86050558 86050679 -156613674 + L2 LINE L2 3192 3313 0 371 288 99 10 chr1 86050702 86050977 -156613376 - L1ME3A LINE L1 -304 5866 5642 460 341 70 0 chr1 86052348 86052562 -156611791 - MIR SINE MIR -2 260 32 986 158 10 51 chr1 86052564 86052760 -156611593 + MLT1A1 LTR MaLR 1 188 -177 1062 187 6 0 chr1 86052858 86053040 -156611313 + MLT1A1 LTR MaLR 183 365 0 548 235 105 20 chr1 86053070 86053223 -156611130 - MER5B DNA MER1_type -12 166 1 1378 254 72 48 chr1 86053854 86054606 -156609747 - HAL1 LINE L1 -919 1588 819 605 120 72 1 chr1 86054672 86054782 -156609571 - MLT1D LTR MaLR -2 503 351 944 171 0 33 chr1 86054783 86054964 -156609389 + FRAM SINE Alu 1 174 -2 1258 192 58 87 chr1 86054971 86055270 -156609083 - MLT1D LTR MaLR -135 370 83 2375 108 39 33 chr1 86055270 86055632 -156608721 - THE1B LTR MaLR 0 364 1 1258 192 58 87 chr1 86055632 86055713 -156608640 - MLT1D LTR MaLR -422 83 1 244 346 55 44 chr1 86056013 86056195 -156608158 + L2 LINE L2 2698 2881 -433 181 277 64 0 chr1 86056248 86056295 -156608058 + L2 LINE L2 3142 3191 -81 1058 190 45 0 chr1 86056312 86056491 -156607862 - MER5A DNA MER1_type 0 189 3 327 221 15 0 chr1 86056517 86056585 -156607768 + L2 LINE L2 3186 3254 -18 21 36 0 0 chr1 86056712 86056740 -156607613 + AT_rich Low_complexity Low_complexity 1 28 0 1514 155 18 75 chr1 86057385 86057551 -156606802 + L1MA6 LINE L1 5765 5939 -361 2157 128 7 0 chr1 86057551 86057848 -156606505 - AluSx SINE Alu -13 299 1 1514 155 18 75 chr1 86057848 86057859 -156606494 + L1MA6 LINE L1 5939 5949 -351 2464 67 3 0 chr1 86057859 86058157 -156606196 - AluY SINE Alu -12 299 1 1514 155 18 75 chr1 86058157 86058313 -156606040 + L1MA6 LINE L1 5949 6080 -220 368 100 50 0 chr1 86058314 86058374 -156605979 + Alu SINE Alu 1 63 -236 1556 102 0 9 chr1 86058477 86058693 -156605660 + AluSg/x SINE Alu 92 305 -7 1090 153 57 0 chr1 86058693 86058902 -156605451 + L1MA8 LINE L1 6065 6285 -6 264 216 81 14 chr1 86059137 86059211 -156605142 + L2 LINE L2 3235 3313 0 345 140 0 0 chr1 86059211 86059268 -156605085 + (TGGA)n Simple_repeat Simple_repeat 2 58 0 28 29 0 0 chr1 86059327 86059362 -156604991 + AT_rich Low_complexity Low_complexity 1 35 0 263 316 50 0 chr1 86059439 86059578 -156604775 - L1ME4a LINE L1 -174 5947 5802 453 313 16 8 chr1 86060256 86060384 -156603969 - L2 LINE L2 -8 3264 3136 277 263 156 86 chr1 86060413 86060786 -156603567 - MLT1K LTR MaLR 0 588 190 2089 115 74 12 chr1 86060972 86061295 -156603058 - MER61A LTR ERV1 0 343 1 202 300 141 32 chr1 86061590 86061810 -156602543 - L2 LINE L2 -557 2757 2514 210 282 64 45 chr1 86062548 86062658 -156601695 + MIR3 SINE MIR 2 113 -95 292 307 47 74 chr1 86062827 86063123 -156601230 + L2 LINE L2 2660 2947 -367 681 247 135 0 chr1 86063850 86064020 -156600333 - MER91A DNA MER1_type -3 193 1 1289 259 115 56 chr1 86064619 86064778 -156599575 - MLT1H LTR MaLR -5 544 396 1915 184 17 53 chr1 86064778 86065190 -156599163 + MLT2C1 LTR ERVL 1 397 0 1289 259 115 56 chr1 86065190 86065544 -156598809 - MLT1H LTR MaLR -153 396 1 259 309 122 8 chr1 86065657 86065780 -156598573 + MIR SINE MIR 117 253 -9 1941 151 0 0 chr1 86065787 86066072 -156598281 + AluJb SINE Alu 1 285 -27 270 0 0 0 chr1 86066391 86066421 -156597932 + (TA)n Simple_repeat Simple_repeat 2 31 0 5349 120 23 3 chr1 86066587 86067728 -156596625 - L1PA14 LINE L1 -128 6033 4869 41 58 0 0 chr1 86067823 86067892 -156596461 + AT_rich Low_complexity Low_complexity 1 69 0 2004 127 0 7 chr1 86067974 86068282 -156596071 - AluSx SINE Alu 0 306 1 228 35 0 0 chr1 86068284 86068313 -156596040 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 271 279 50 43 chr1 86069273 86069434 -156594919 + L2 LINE L2 2108 2269 -1045 214 333 0 44 chr1 86070865 86070979 -156593374 + L2 LINE L2 2867 2975 -338 496 288 69 0 chr1 86071242 86071402 -156592951 + MIR SINE MIR 71 241 -21 185 270 79 32 chr1 86071723 86071786 -156592567 + L2 LINE L2 3207 3272 0 341 242 109 23 chr1 86073564 86073692 -156590661 + MIR SINE MIR 8 146 -116 336 106 0 0 chr1 86073712 86073759 -156590594 - MADE1 DNA Mariner -33 47 1 221 178 0 22 chr1 86074356 86074401 -156589952 + GA-rich Low_complexity Low_complexity 1 44 0 1302 120 38 29 chr1 86075758 86075967 -156588386 - THE1B LTR MaLR -153 211 1 506 295 84 0 chr1 86076450 86076640 -156587713 - MIR SINE MIR -10 252 47 280 105 0 0 chr1 86076653 86076691 -156587662 - THE1B LTR MaLR -33 331 294 682 298 53 40 chr1 86076783 86077326 -156587027 + L1MEd LINE L1 650 1199 -4920 682 266 18 83 chr1 86077453 86077780 -156586573 - L2 LINE L2 0 3313 3008 472 68 17 0 chr1 86077839 86077898 -156586455 + U7 snRNA snRNA 2 61 -2 22 35 0 0 chr1 86077900 86077929 -156586424 + AT_rich Low_complexity Low_complexity 1 29 0 702 304 39 9 chr1 86077985 86078233 -156586120 - MIR SINE MIR 0 262 7 268 221 117 84 chr1 86078227 86078334 -156586019 + L2 LINE L2 1865 1980 -1334 * 1588 175 96 13 chr1 86078334 86078648 -156585705 - MER58B DNA MER1_type -1 340 1 268 221 117 84 chr1 86078648 86078694 -156585659 + L2 LINE L2 1980 2023 -1291 * 723 223 141 0 chr1 86078692 86078876 -156585477 - MIR SINE MIR -9 253 44 188 216 27 0 chr1 86078876 86078913 -156585440 - MIR SINE MIR -196 66 29 518 216 65 7 chr1 86079068 86079207 -156585146 - MLT1J2 LTR MaLR -303 147 1 836 307 177 39 chr1 86079257 86080319 -156584034 + L2 LINE L2 2045 3263 -9 218 305 42 21 chr1 86080331 86080426 -156583927 + MIR SINE MIR 56 152 -110 2168 76 14 24 chr1 86080446 86080737 -156583616 + AluY SINE Alu 1 288 -23 413 136 17 0 chr1 86080837 86080896 -156583457 - AluS SINE Alu -248 61 2 648 237 43 59 chr1 86080900 86081086 -156583267 - MIR SINE MIR -59 203 21 265 309 95 16 chr1 86081758 86081884 -156582469 - L2 LINE L2 -5 3308 3173 283 328 166 53 chr1 86082330 86082481 -156581872 - L2 LINE L2 -738 2576 2443 5269 70 77 114 chr1 86082481 86083339 -156581014 + LTR12 LTR ERV1 1 826 0 283 328 166 53 chr1 86083339 86083433 -156580920 - L2 LINE L2 -871 2443 2361 1547 157 34 11 chr1 86083433 86083695 -156580658 - AluJb SINE Alu -44 268 1 283 328 166 53 chr1 86083695 86084182 -156580171 - L2 LINE L2 -953 2361 1760 660 240 13 69 chr1 86084276 86084509 -156579844 + MIR SINE MIR 26 245 -17 264 59 0 0 chr1 86085675 86085709 -156578644 + (T)n Simple_repeat Simple_repeat 1 34 0 337 235 0 0 chr1 86085717 86085785 -156578568 + L2 LINE L2 3205 3272 0 2135 106 10 19 chr1 86086304 86086616 -156577737 + AluSx SINE Alu 1 309 -3 1788 194 40 9 chr1 86087150 86087479 -156576874 - MER7A DNA MER2_type 0 346 10 218 296 102 0 chr1 86087902 86088000 -156576353 + L2 LINE L2 3165 3272 0 403 268 140 12 chr1 86088103 86088346 -156576007 - L1ME4a LINE L1 0 6121 5848 562 268 133 50 chr1 86088375 86088657 -156575696 - L1ME3A LINE L1 0 6170 5869 356 241 9 46 chr1 86088831 86088939 -156575414 - L1ME3A LINE L1 -506 5615 5512 200 298 43 0 chr1 86088943 86088990 -156575363 - L3 LINE CR1 -480 1097 1049 208 232 20 121 chr1 86089079 86089178 -156575175 - MIR3 SINE MIR -14 194 106 302 248 107 47 chr1 86089229 86089378 -156574975 + L1ME4a LINE L1 5963 6120 -1 1579 138 39 105 chr1 86089398 86089732 -156574621 + AluSx SINE Alu 1 312 0 351 0 0 0 chr1 86090029 86090068 -156574285 + (TTGG)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr1 86090088 86090110 -156574243 + AT_rich Low_complexity Low_complexity 1 22 0 2067 137 0 0 chr1 86090529 86090822 -156573531 + AluSx SINE Alu 1 293 -19 416 149 17 21 chr1 86090854 86090985 -156573368 + MER53 DNA DNA 2 188 -1 254 304 54 0 chr1 86091160 86091252 -156573101 + MIR SINE MIR 123 219 -43 339 245 37 38 chr1 86091672 86091771 -156572582 - L1MC4a LINE L1 0 7808 7792 1463 169 4 4 chr1 86091771 86092007 -156572346 + MER46A DNA MER2_type 1 236 0 339 245 37 38 chr1 86092007 86092092 -156572261 - L1MC4a LINE L1 -16 7792 7708 193 279 66 16 chr1 86092092 86092153 -156572200 + MER5B DNA MER1_type 17 80 -98 595 309 21 5 chr1 86092197 86092388 -156571965 - MLT1I LTR MaLR -135 274 81 2280 109 0 0 chr1 86092397 86092700 -156571653 + AluSx SINE Alu 1 303 -9 442 347 8 0 chr1 86092799 86092923 -156571430 - MIR3 SINE MIR -46 162 38 180 286 36 36 chr1 86093636 86093692 -156570661 - MIR3 SINE MIR -23 185 130 * 499 284 96 39 chr1 86093688 86093917 -156570436 - MIR SINE MIR -1 261 20 209 189 0 0 chr1 86094329 86094366 -156569987 + A-rich Low_complexity Low_complexity 3 39 0 250 393 75 0 chr1 86094561 86094668 -156569685 - L2 LINE L2 -21 3251 3137 236 210 25 25 chr1 86094682 86094763 -156569590 + (TA)n Simple_repeat Simple_repeat 1 81 0 305 232 0 53 chr1 86094980 86095075 -156569278 - L1MC4 LINE L1 -1337 6705 6616 394 262 8 24 chr1 86096192 86096318 -156568035 + MIR SINE MIR 88 211 -51 1901 163 3 10 chr1 86096474 86096493 -156567860 - AluJb SINE Alu -8 304 286 303 28 0 0 chr1 86096493 86096529 -156567824 + (TG)n Simple_repeat Simple_repeat 2 37 0 1901 163 3 10 chr1 86096529 86096815 -156567538 - AluJb SINE Alu -26 286 1 2413 121 25 27 chr1 86097748 86098113 -156566240 + THE1B LTR MaLR 1 364 0 2382 101 0 3 chr1 86098681 86098988 -156565365 - AluSp SINE Alu -7 306 1 270 0 0 0 chr1 86099602 86099632 -156564721 + (TG)n Simple_repeat Simple_repeat 2 31 0 852 227 109 8 chr1 86100336 86100592 -156563761 - LTR16A1 LTR ERVL -14 443 162 364 213 33 127 chr1 86100663 86100813 -156563540 + MIR3 SINE MIR 52 187 -21 886 251 67 50 chr1 86101182 86101540 -156562813 + L1MC4a LINE L1 5547 5910 -1898 2074 132 7 0 chr1 86101967 86102262 -156562091 + AluSx SINE Alu 1 297 -15 386 195 12 12 chr1 86102264 86102346 -156562007 + MER58B DNA MER1_type 258 339 -2 261 0 0 0 chr1 86102469 86102498 -156561855 + (A)n Simple_repeat Simple_repeat 1 29 0 369 292 58 44 chr1 86102602 86102824 -156561529 + MIR3 SINE MIR 10 225 -37 291 292 66 0 chr1 86103169 86103306 -156561047 - MER103 DNA DNA -10 156 11 2017 116 27 10 chr1 86103427 86103720 -156560633 + AluSx SINE Alu 1 298 -14 1669 185 38 0 chr1 86104321 86104634 -156559719 + L1MCa LINE L1 599 923 -5503 1258 175 19 0 chr1 86104636 86104847 -156559506 - AluJo SINE Alu -13 299 85 5715 174 47 22 chr1 86104853 86105678 -156558675 + L1MCa LINE L1 924 1727 -4699 2244 117 0 7 chr1 86105678 86105987 -156558366 + AluSx SINE Alu 1 307 -5 5715 174 47 22 chr1 86105987 86108098 -156556255 + L1MCa LINE L1 1727 4027 -2399 852 233 22 40 chr1 86108080 86108308 -156556045 + L1MCa LINE L1 4271 4494 -1932 * 779 188 30 24 chr1 86108308 86108473 -156555880 - MSTB LTR MaLR -260 166 1 398 264 0 0 chr1 86108475 86108566 -156555787 + L1M4 LINE L1 5080 5170 -976 7247 30 12 3 chr1 86108984 86109844 -156554509 - L1PA4 LINE L1 -3 6152 5286 389 265 0 12 chr1 86109846 86109929 -156554424 - L2 LINE L2 -37 3235 3154 652 91 23 0 chr1 86110045 86110133 -156554220 - AluY SINE Alu -220 91 2 1554 303 65 70 chr1 86110245 86111244 -156553109 - L2 LINE L2 -440 2874 1881 283 180 33 16 chr1 86111698 86111759 -156552594 - L2 LINE L2 -1 3312 3251 2762 133 6 52 chr1 86112064 86112530 -156551823 - MER65A LTR ERV1 0 445 1 2770 237 32 3 chr1 86112531 86113156 -156551197 - MER65A-int LTR ERV1 0 4871 4229 2368 200 76 37 chr1 86113154 86113768 -156550585 - MER65A-int LTR ERV1 -520 4416 3530 * 361 200 106 12 chr1 86113764 86113849 -156550504 - LOR1-int LTR ERV1 -935 5396 5304 * 2654 176 97 109 chr1 86113857 86114482 -156549871 - LOR1-int LTR ERV1 -1144 4024 3393 405 0 0 0 chr1 86114482 86114527 -156549826 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 2654 176 97 109 chr1 86114527 86115227 -156549126 - LOR1-int LTR ERV1 -1775 3393 2718 804 183 10 46 chr1 86115310 86115507 -156548846 - LOR1-int LTR ERV1 -2867 3731 3542 253 208 0 0 chr1 86115602 86115650 -156548703 - LOR1-int LTR ERV1 -4282 2476 2429 2000 116 20 0 chr1 86115742 86116034 -156548319 + AluSc SINE Alu 1 298 -11 346 237 67 3 chr1 86116048 86116200 -156548153 - LOR1-int LTR ERV1 -2957 4181 2164 1307 213 37 92 chr1 86116224 86116841 -156547512 - LOR1-int LTR ERV1 -2611 4065 1558 319 196 225 57 chr1 86117015 86117224 -156547129 - L1ME4a LINE L1 -109 6012 5769 359 203 13 0 chr1 86117795 86117874 -156546479 + MER113 DNA MER1_type? 116 195 -326 228 193 269 17 chr1 86117929 86118048 -156546305 + MER113 DNA MER1_type? 303 451 -70 2006 133 13 0 chr1 86118127 86118429 -156545924 + AluSx SINE Alu 1 306 -6 2402 54 10 10 chr1 86118706 86119002 -156545351 + AluY SINE Alu 1 296 -15 447 274 145 28 chr1 86119439 86119618 -156544735 - MIR SINE MIR -7 255 56 465 261 55 55 chr1 86119904 86120069 -156544284 - MIR3 SINE MIR -37 171 7 284 284 28 62 chr1 86120218 86120429 -156543924 - L2 LINE L2 -175 3138 2935 3297 79 40 5 chr1 86120792 86121221 -156543132 - MLT2A1 LTR ERVL 0 444 1 195 129 0 0 chr1 86123061 86123092 -156541261 + (T)n Simple_repeat Simple_repeat 1 31 0 2312 83 13 0 chr1 86123599 86123901 -156540452 - AluSg SINE Alu -4 306 1 442 321 8 0 chr1 86124024 86124158 -156540195 - MIR SINE MIR 0 262 128 1755 194 159 64 chr1 86124204 86124782 -156539571 - Charlie1a DNA MER1_type -820 635 3 2487 144 91 73 chr1 86125348 86125854 -156538499 + MLT2B2 LTR ERVL 1 515 0 191 273 0 0 chr1 86127020 86127064 -156537289 - L2 LINE L2 -12 3260 3217 1909 104 7 7 chr1 86127082 86127351 -156537002 - AluY SINE Alu -16 295 27 874 20 10 0 chr1 86127451 86127553 -156536800 + L1PA4 LINE L1 5762 5864 -291 342 274 39 20 chr1 86127637 86127739 -156536614 - MIR SINE MIR -98 164 61 261 308 100 33 chr1 86128014 86128134 -156536219 + L2 LINE L2 3136 3263 -9 1703 104 0 0 chr1 86128224 86128446 -156535907 + AluSx SINE Alu 1 222 -90 1855 136 3 56 chr1 86130435 86130759 -156533594 + AluJo SINE Alu 1 307 -5 1369 110 96 6 chr1 86130759 86130996 -156533357 + L1MA9 LINE L1 5758 6010 -121 1287 132 81 4 chr1 86130996 86131229 -156533124 + L1MA9 LINE L1 6055 6307 -5 1369 110 96 6 chr1 86131229 86131251 -156533102 + L1MA9 LINE L1 6010 6029 -102 284 303 30 24 chr1 86131424 86131453 -156532900 - L2 LINE L2 -435 2879 2852 2072 140 7 3 chr1 86131453 86131761 -156532592 + AluSx SINE Alu 1 309 -3 284 303 30 24 chr1 86131761 86131896 -156532457 - L2 LINE L2 -462 2852 2714 902 232 64 30 chr1 86132049 86132282 -156532071 + MIR SINE MIR 22 262 0 752 249 168 12 chr1 86132361 86132697 -156531656 + L1MC4 LINE L1 7379 7896 -146 223 317 0 0 chr1 86132766 86132826 -156531527 - MIR SINE MIR -2 260 201 204 320 26 90 chr1 86132984 86133140 -156531213 + L2 LINE L2 3122 3267 -5 303 232 97 58 chr1 86133483 86133638 -156530715 - MLT1J LTR MaLR -38 473 313 1171 258 72 18 chr1 86134052 86134127 -156530226 + L2 LINE L2 2610 2679 -634 4332 81 14 21 chr1 86134127 86134586 -156529767 - MER41A LTR ERV1 0 554 98 2269 111 0 3 chr1 86134586 86134892 -156529461 + AluSg SINE Alu 1 305 -5 4332 81 14 21 chr1 86134892 86134990 -156529363 - MER41A LTR ERV1 -456 98 1 1171 258 72 18 chr1 86134990 86135487 -156528866 + L2 LINE L2 2679 3214 -99 2017 123 14 7 chr1 86135805 86136098 -156528255 - AluSx SINE Alu -17 295 1 345 266 35 14 chr1 86136186 86136329 -156528024 - MER104 DNA Tc2 0 180 35 714 246 68 64 chr1 86136716 86137226 -156527127 - MLT1K LTR MaLR -27 561 14 338 288 34 48 chr1 86137518 86137664 -156526689 - MIR SINE MIR -45 217 74 4088 169 62 37 chr1 86138168 86138328 -156526025 - L1MB3 LINE L1 -1 6182 6027 1608 158 34 10 chr1 86138328 86138625 -156525728 - AluJo SINE Alu -5 307 4 4088 169 62 37 chr1 86138625 86139559 -156524794 - L1MB3 LINE L1 -156 6027 5118 237 33 0 0 chr1 86139559 86139589 -156524764 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1878 125 4 7 chr1 86139589 86139870 -156524483 - AluSx SINE Alu -32 280 1 4088 169 62 37 chr1 86139870 86139990 -156524363 - L1MB3 LINE L1 -1065 5118 5002 2226 175 55 0 chr1 86139990 86140391 -156523962 - MSTB LTR MaLR 0 426 4 4088 169 62 37 chr1 86140391 86140729 -156523624 - L1MB3 LINE L1 -1181 5002 4530 2324 53 10 3 chr1 86141127 86141428 -156522925 - AluY SINE Alu -8 303 1 2163 85 3 0 chr1 86142432 86142734 -156521619 + AluSx SINE Alu 1 303 0 210 163 0 61 chr1 86143329 86143378 -156520975 + (TATG)n Simple_repeat Simple_repeat 3 48 0 364 318 95 33 chr1 86143465 86143676 -156520677 + MIR SINE MIR 29 252 -10 359 214 214 23 chr1 86143699 86143830 -156520523 - L1ME4a LINE L1 -2 6119 5964 285 325 83 0 chr1 86143868 86143988 -156520365 - MIR SINE MIR 0 262 133 2036 91 33 0 chr1 86143989 86144265 -156520088 - AluSg SINE Alu -13 297 13 211 200 0 0 chr1 86144736 86144771 -156519582 + (CA)n Simple_repeat Simple_repeat 2 36 0 609 163 10 0 chr1 86145298 86145396 -156518957 - MIR SINE MIR -50 212 114 1569 83 18 5 chr1 86145671 86145889 -156518464 - pTR5 LTR ERV1 -2046 392 172 232 247 43 21 chr1 86145892 86145985 -156518368 - LTR30 LTR ERV1 -80 642 548 4162 117 91 76 chr1 86145994 86146935 -156517418 - pTR5 LTR ERV1 -439 1999 738 422 263 102 27 chr1 86147143 86147329 -156517024 + MIR SINE MIR 59 258 -4 529 209 128 35 chr1 86147810 86147875 -156516478 - MER5A DNA MER1_type -1 188 130 2164 109 23 0 chr1 86147875 86148177 -156516176 + AluSx SINE Alu 1 309 -3 529 209 128 35 chr1 86148177 86148283 -156516070 - MER5A DNA MER1_type -59 130 1 774 264 57 20 chr1 86199988 86200284 -156464069 - L1MA9 LINE L1 -38 6274 5968 8673 169 62 30 chr1 86200420 86203154 -156461199 - L1MA9 LINE L1 -370 5942 3122 1048 200 10 0 chr1 86203261 86203461 -156460892 - Tigger3(Golem) DNA MER2_type -2826 203 2 302 302 21 0 chr1 86203545 86203641 -156460712 + CT-rich Low_complexity Low_complexity 2 99 0 266 272 79 0 chr1 86203770 86203884 -156460469 - L1ME4a LINE L1 -1988 5820 5698 358 300 128 55 chr1 86204721 86204799 -156459554 - L2 LINE L2 -10 3262 3191 2020 127 0 0 chr1 86204799 86205082 -156459271 + AluSx SINE Alu 21 303 -9 358 300 128 55 chr1 86205082 86205276 -156459077 - L2 LINE L2 -81 3191 2970 803 99 29 47 chr1 86205446 86205617 -156458736 - Charlie5 DNA MER1_type -27 2585 2418 674 80 0 0 chr1 86205618 86205706 -156458647 - AluSc SINE Alu -4 305 218 22 35 0 0 chr1 86205838 86205867 -156458486 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 86205958 86205987 -156458366 + AT_rich Low_complexity Low_complexity 1 29 0 423 181 0 0 chr1 86206172 86206244 -156458109 + 5S rRNA rRNA 1 72 -49 2159 106 0 13 chr1 86207886 86208198 -156456155 + AluSg SINE Alu 1 308 -2 3281 153 29 32 chr1 86208431 86208960 -156455393 - L1MB5 LINE L1 -10 6164 5636 1916 150 3 23 chr1 86208960 86209266 -156455087 + AluSx SINE Alu 1 300 -12 3281 153 29 32 chr1 86209266 86209389 -156454964 - L1MB5 LINE L1 -538 5636 5514 266 154 0 0 chr1 86209616 86209655 -156454698 - Alu SINE Alu -264 39 1 700 171 74 32 chr1 86209657 86209873 -156454480 - Charlie5 DNA MER1_type -154 2458 2234 513 207 9 0 chr1 86209875 86209991 -156454362 - Charlie5 DNA MER1_type -2490 122 6 1976 90 94 0 chr1 86210982 86211259 -156453094 - AluSx SINE Alu -9 303 1 21 0 0 0 chr1 86211269 86211290 -156453063 + AT_rich Low_complexity Low_complexity 1 21 0 3350 118 21 0 chr1 86211390 86211915 -156452438 - L1MA3 LINE L1 -1 6304 5769 822 147 0 0 chr1 86211915 86212031 -156452322 - AluJb SINE Alu -19 293 178 1365 185 61 27 chr1 86212031 86212328 -156452025 - AluJo SINE Alu -5 307 1 23 0 0 0 chr1 86212493 86212516 -156451837 + AT_rich Low_complexity Low_complexity 1 23 0 2184 110 0 0 chr1 86212978 86213280 -156451073 + AluSq SINE Alu 1 302 0 216 0 0 0 chr1 86213308 86213332 -156451021 + (CA)n Simple_repeat Simple_repeat 2 25 0 2869 115 45 11 chr1 86214034 86214503 -156449850 + MER31A LTR ERV1 1 485 0 1938 146 0 14 chr1 86214839 86215134 -156449219 + AluJo SINE Alu 1 291 -21 858 150 39 0 chr1 86216047 86216200 -156448153 + L1MB8 LINE L1 5801 5959 -219 372 198 33 83 chr1 86216467 86216588 -156447765 - MIR3 SINE MIR -6 202 88 1874 65 0 42 chr1 86216681 86216942 -156447411 - AluY SINE Alu -4 307 58 2105 119 11 0 chr1 86217098 86217383 -156446970 + AluSx SINE Alu 20 307 -5 473 275 60 44 chr1 86217520 86217702 -156446651 + MIR SINE MIR 2 186 -76 265 376 93 6 chr1 86217765 86217927 -156446426 + L2 LINE L2 3021 3196 -76 385 246 91 78 chr1 86218178 86218410 -156445943 - L1ME3A LINE L1 -11 6159 5925 767 230 63 4 chr1 86218443 86218682 -156445671 - L1ME3A LINE L1 -230 5940 5688 439 311 20 7 chr1 86218866 86219014 -156445339 + MER5A DNA MER1_type 3 152 -37 24 0 0 0 chr1 86219294 86219318 -156445035 + AT_rich Low_complexity Low_complexity 1 24 0 339 127 127 0 chr1 86219861 86219932 -156444421 - L1MC1 LINE L1 -1 6332 6253 2744 154 93 21 chr1 86219932 86220511 -156443842 - L1MC1 LINE L1 -289 6044 5424 236 231 39 0 chr1 86222785 86222837 -156441516 - L3b LINE CR1 0 1583 1530 927 281 50 38 chr1 86222866 86223326 -156441027 + L2 LINE L2 2764 3225 -88 341 194 19 68 chr1 86223368 86223471 -156440882 + MIR SINE MIR 101 198 -64 1668 160 41 10 chr1 86223606 86223899 -156440454 - AluJb SINE Alu -10 302 1 287 185 250 43 chr1 86224163 86224255 -156440098 - L2 LINE L2 -2 3311 3201 710 259 112 4 chr1 86224935 86225167 -156439186 + MIR SINE MIR 6 262 0 26 0 0 0 chr1 86228380 86228406 -156435947 + AT_rich Low_complexity Low_complexity 1 26 0 393 384 8 0 chr1 86229198 86229331 -156435022 + L2 LINE L2 2562 2695 -619 306 247 55 14 chr1 86229396 86229469 -156434884 + L2 LINE L2 2681 2756 -558 423 339 42 12 chr1 86229551 86229716 -156434637 + L2 LINE L2 3099 3268 -4 1549 101 0 5 chr1 86230031 86230249 -156434104 + AluSg/x SINE Alu 86 302 0 189 0 0 0 chr1 86230422 86230443 -156433910 + (A)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr1 86230592 86230612 -156433741 + (T)n Simple_repeat Simple_repeat 1 20 0 4719 136 85 12 chr1 86231069 86231989 -156432364 + Tigger3b DNA MER2_type 243 1229 -2 207 0 0 0 chr1 86231989 86232012 -156432341 + (TG)n Simple_repeat Simple_repeat 2 24 0 310 242 15 0 chr1 86232039 86232105 -156432248 - MER2 DNA MER2_type 0 345 279 842 208 0 6 chr1 86232252 86232411 -156431942 + AluJb SINE Alu 147 304 -8 229 296 158 25 chr1 86232411 86232614 -156431739 + HAL1b LINE L1 454 683 -665 369 254 50 66 chr1 86233129 86233310 -156431043 + L1ME4a LINE L1 5944 6121 0 262 296 263 30 chr1 86233392 86233599 -156430754 + L2 LINE L2 2919 3076 -237 1964 150 14 0 chr1 86233599 86233892 -156430461 - AluSg SINE Alu -13 297 1 262 296 263 30 chr1 86233892 86233988 -156430365 + L2 LINE L2 3076 3293 -20 1381 190 39 52 chr1 86234507 86234732 -156429621 - AluJb SINE Alu -1 301 80 2281 106 0 6 chr1 86234732 86235043 -156429310 + AluSg SINE Alu 1 309 -1 1381 190 39 52 chr1 86235043 86235122 -156429231 - AluJb SINE Alu -222 80 1 231 349 28 0 chr1 86235413 86235519 -156428834 + MER117 DNA MER1_type 19 127 -70 486 154 66 0 chr1 86236673 86236764 -156427589 + LTR54 LTR ERV1 3 99 -411 267 251 331 6 chr1 86236826 86236989 -156427364 + MER57A LTR ERV1 132 347 -56 * 414 107 80 0 chr1 86236963 86237038 -156427315 + LTR54 LTR ERV1 427 507 -3 1201 122 26 11 chr1 86237259 86237448 -156426905 - AluSg/x SINE Alu 0 312 121 2246 116 0 7 chr1 86237670 86237973 -156426380 + AluSx SINE Alu 1 301 -11 193 351 50 61 chr1 86238156 86238532 -156425821 + L2 LINE L2 670 1041 -2273 2274 94 17 3 chr1 86238714 86239013 -156425340 - AluY SINE Alu -8 303 1 1623 159 24 28 chr1 86239254 86239584 -156424769 - AluJb SINE Alu 0 329 1 3795 152 51 14 chr1 86239866 86240568 -156423785 + L1MB2 LINE L1 5444 6171 0 2287 105 0 3 chr1 86240948 86241253 -156423100 - AluSg SINE Alu -6 304 1 1733 175 0 29 chr1 86241253 86241561 -156422792 - AluJb SINE Alu -13 299 1 287 346 42 103 chr1 86241590 86241731 -156422622 + L2 LINE L2 2973 3086 -186 2057 118 0 16 chr1 86241731 86242035 -156422318 - AluSq SINE Alu -12 301 3 287 346 42 103 chr1 86242035 86242205 -156422148 + L2 LINE L2 3086 3265 -7 316 284 0 0 chr1 86242737 86242818 -156421535 + L1MC4 LINE L1 6614 6694 -1348 2165 226 119 58 chr1 86242825 86243519 -156420834 + L1MC5 LINE L1 6346 6996 -965 2137 122 0 3 chr1 86243519 86243823 -156420530 + AluSc SINE Alu 1 303 -6 2165 226 119 58 chr1 86243823 86244541 -156419812 + L1MC5 LINE L1 6996 7914 -47 21 0 0 0 chr1 86245011 86245032 -156419321 + AT_rich Low_complexity Low_complexity 1 21 0 690 266 111 9 chr1 86245263 86245295 -156419058 - MIR SINE MIR -5 257 230 1249 103 108 28 chr1 86245295 86245508 -156418845 + MER30 DNA MER1_type 1 230 0 690 266 111 9 chr1 86245508 86245701 -156418652 - MIR SINE MIR -32 230 9 22 0 0 0 chr1 86246130 86246152 -156418201 + AT_rich Low_complexity Low_complexity 1 22 0 1446 69 0 0 chr1 86246360 86246534 -156417819 - AluSg SINE Alu -136 174 1 753 177 0 15 chr1 86246858 86246988 -156417365 - FLAM_A SINE Alu -5 128 1 22 56 0 0 chr1 86247058 86247094 -156417259 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 86248263 86248298 -156416055 + AT_rich Low_complexity Low_complexity 1 35 0 2093 111 21 7 chr1 86249253 86249541 -156414812 - AluSx SINE Alu -20 292 1 325 294 7 78 chr1 86249873 86250026 -156414327 - MIR SINE MIR -74 188 47 627 254 66 27 chr1 86250049 86250265 -156414088 - MIR SINE MIR -6 256 36 22 35 0 0 chr1 86251327 86251356 -156412997 + AT_rich Low_complexity Low_complexity 1 29 0 1951 156 3 7 chr1 86251439 86251747 -156412606 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr1 86253529 86253559 -156410794 + AT_rich Low_complexity Low_complexity 1 30 0 404 284 79 16 chr1 86254180 86254307 -156410046 + L2 LINE L2 3179 3313 0 2454 66 0 7 chr1 86255823 86256128 -156408225 - AluY SINE Alu -8 303 1 196 198 198 86 chr1 86256147 86256228 -156408125 + L3 LINE CR1 1021 1110 -467 454 150 0 50 chr1 86256285 86256365 -156407988 + Tigger2a DNA MER2_type 1 76 -358 193 374 168 36 chr1 86258145 86258479 -156405874 - L2 LINE L2 -66 3206 2829 222 361 46 15 chr1 86258506 86258636 -156405717 - L2 LINE L2 -601 2713 2580 509 67 0 13 chr1 86258636 86258711 -156405642 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 409 365 109 12 chr1 86258746 86259075 -156405278 - L2 LINE L2 -826 2488 2128 1109 152 222 16 chr1 86259385 86259628 -156404725 + AluJo SINE Alu 1 293 -9 44 35 0 0 chr1 86259650 86259708 -156404645 + AT_rich Low_complexity Low_complexity 1 58 0 1883 156 0 3 chr1 86259710 86259998 -156404355 + AluJo SINE Alu 3 289 -23 1646 174 36 23 chr1 86260203 86260507 -156403846 + AluJb SINE Alu 1 308 -4 201 162 0 0 chr1 86260526 86260563 -156403790 + A-rich Low_complexity Low_complexity 1 37 0 897 313 97 35 chr1 86261162 86261907 -156402446 + L1MEc LINE L1 35 825 -5571 294 261 45 36 chr1 86262251 86262362 -156401991 + MER21B LTR ERV1 1 112 -751 * 418 222 0 0 chr1 86262355 86262427 -156401926 + MER21B LTR ERV1 19 90 -773 2343 210 108 48 chr1 86262428 86263175 -156401178 + MER21B LTR ERV1 42 833 -30 2306 89 6 29 chr1 86263881 86264194 -156400159 + AluSx SINE Alu 1 306 -6 2744 104 26 19 chr1 86264375 86264806 -156399547 - MER1A DNA MER1_type 0 529 34 209 257 0 165 chr1 86266851 86266960 -156397393 + L3 LINE CR1 571 661 -916 1741 173 0 25 chr1 86267509 86267827 -156396526 + AluJb SINE Alu 1 310 -2 1668 163 17 17 chr1 86268367 86268662 -156395691 + AluJb SINE Alu 1 295 -17 183 42 0 0 chr1 86268665 86268689 -156395664 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr1 86269550 86269574 -156394779 + AT_rich Low_complexity Low_complexity 1 24 0 646 297 57 0 chr1 86271759 86271951 -156392402 - MIR SINE MIR 0 262 60 2195 93 7 0 chr1 86272063 86272377 -156391976 + AluSg SINE Alu 1 316 0 25 31 0 0 chr1 86273444 86273476 -156390877 + AT_rich Low_complexity Low_complexity 1 32 0 2409 92 0 0 chr1 86273797 86274102 -156390251 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr1 86274178 86274199 -156390154 + AT_rich Low_complexity Low_complexity 1 21 0 1732 154 37 10 chr1 86274604 86274903 -156389450 + AluJb SINE Alu 1 307 -5 325 168 0 119 chr1 86275158 86275259 -156389094 + MER5A DNA MER1_type 16 104 -85 25 0 0 0 chr1 86275409 86275434 -156388919 + AT_rich Low_complexity Low_complexity 1 25 0 631 179 24 0 chr1 86275731 86275854 -156388499 + FLAM_A SINE Alu 11 136 -6 1461 140 8 8 chr1 86276585 86276820 -156387533 + Tigger2 DNA MER2_type 2484 2718 0 651 231 91 11 chr1 86276826 86277012 -156387341 - MIR SINE MIR -8 254 54 259 370 171 16 chr1 86277006 86277257 -156387096 + L3 LINE CR1 1175 1464 -113 * 1517 205 13 0 chr1 86277530 86277828 -156386525 - AluJo SINE Alu -10 302 1 423 0 0 0 chr1 86278064 86278111 -156386242 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1530 178 14 18 chr1 86278111 86278267 -156386086 - AluJo SINE Alu -32 280 124 180 0 0 0 chr1 86278267 86278287 -156386066 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 1530 178 14 18 chr1 86278287 86278411 -156385942 - AluJo SINE Alu -188 124 1 2206 104 0 10 chr1 86278742 86279039 -156385314 + AluSx SINE Alu 1 294 -18 887 188 24 0 chr1 86279067 86279232 -156385121 + MER58B DNA MER1_type 173 341 0 808 236 62 87 chr1 86279233 86279682 -156384671 + L1MC4 LINE L1 7605 8042 0 276 301 14 0 chr1 86279941 86280014 -156384339 + CT-rich Low_complexity Low_complexity 1 74 0 1515 162 26 11 chr1 86280019 86280284 -156384069 - AluJo SINE Alu -31 281 13 233 291 18 0 chr1 86280875 86280930 -156383423 + L1MEd LINE L1 601 656 -5463 2130 95 4 0 chr1 86280979 86281253 -156383100 - AluSx SINE Alu -37 275 1 383 281 93 0 chr1 86281851 86281990 -156382363 + L1ME LINE L1 5578 5729 -441 419 309 48 36 chr1 86282470 86282635 -156381718 + MIR3 SINE MIR 40 206 -2 590 297 66 64 chr1 86283288 86283696 -156380657 + L3 LINE CR1 589 997 -580 554 342 66 17 chr1 86284534 86284835 -156379518 + L3 LINE CR1 1217 1532 -45 6686 159 133 73 chr1 86284904 86286024 -156378329 + L1MC3 LINE L1 5887 7239 -546 263 278 11 11 chr1 86286024 86286114 -156378239 + MLT1F1 LTR MaLR 35 124 -443 6686 159 133 73 chr1 86286114 86286696 -156377657 + L1MC3 LINE L1 7239 7785 0 2291 144 29 29 chr1 86286706 86287123 -156377230 - Tigger2a DNA MER2_type 0 434 18 22 0 0 0 chr1 86287774 86287796 -156376557 + AT_rich Low_complexity Low_complexity 1 22 0 250 300 60 10 chr1 86288023 86288123 -156376230 - MIR SINE MIR -57 205 101 22 35 0 0 chr1 86288414 86288443 -156375910 + AT_rich Low_complexity Low_complexity 1 29 0 212 332 58 111 chr1 86289019 86289414 -156374939 - L2 LINE L2 -44 3228 2855 324 387 65 22 chr1 86289598 86289828 -156374525 - L2 LINE L2 -572 2742 2503 556 355 111 18 chr1 86289862 86290302 -156374051 - L2 LINE L2 -1307 2007 1527 354 268 239 33 chr1 86290346 86290559 -156373794 - MIR SINE MIR -1 261 5 2231 117 3 0 chr1 86291254 86291554 -156372799 - AluSg SINE Alu -9 301 1 1875 157 3 10 chr1 86291736 86292030 -156372323 - AluJb SINE Alu -20 292 1 1350 183 10 77 chr1 86292533 86292844 -156371509 + AluJo SINE Alu 1 290 -22 481 241 43 17 chr1 86292855 86292971 -156371382 + MER5B DNA MER1_type 59 177 -1 18432 128 37 90 chr1 86293611 86295719 -156368634 + L1M1 LINE L1 11 2228 -5337 2047 136 41 6 chr1 86295719 86296064 -156368289 - THE1B LTR MaLR -7 357 1 18432 128 37 90 chr1 86296064 86296295 -156368058 + L1M1 LINE L1 2228 2470 -5095 2255 99 14 0 chr1 86296295 86296588 -156367765 + AluSg SINE Alu 1 297 -13 18432 128 37 90 chr1 86296588 86298561 -156365792 + L1M1 LINE L1 2470 4427 -3138 264 100 0 0 chr1 86299179 86299219 -156365134 + (TAGG)n Simple_repeat Simple_repeat 3 42 0 234 62 0 0 chr1 86299223 86299255 -156365098 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 21 57 0 0 chr1 86299711 86299746 -156364607 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 86300383 86300412 -156363941 + AT_rich Low_complexity Low_complexity 1 29 0 2365 92 7 3 chr1 86300436 86300742 -156363611 + AluSq SINE Alu 1 307 -6 1640 167 17 43 chr1 86302578 86302878 -156361475 + AluJb SINE Alu 1 292 -20 991 175 184 9 chr1 86303078 86303306 -156361047 + AluJo SINE Alu 33 300 -12 2348 94 3 3 chr1 86304175 86304482 -156359871 - AluSq SINE Alu -6 307 1 361 306 85 23 chr1 86304665 86304853 -156359500 + MIR SINE MIR 16 212 -50 226 336 8 67 chr1 86304888 86305022 -156359331 - MER5A DNA MER1_type -57 132 7 1335 165 56 73 chr1 86305057 86305348 -156359005 + AluJo SINE Alu 1 288 -24 192 77 0 0 chr1 86305348 86305374 -156358979 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1335 165 56 73 chr1 86305374 86305385 -156358968 + AluJo SINE Alu 288 298 -14 1981 171 13 0 chr1 86305439 86305755 -156358598 + 7SLRNA srpRNA srpRNA 1 320 0 200 326 35 85 chr1 86305761 86305805 -156358548 - MER5A DNA MER1_type -49 140 95 2259 100 7 3 chr1 86305805 86306105 -156358248 + AluSx SINE Alu 1 301 -11 200 326 35 85 chr1 86306105 86306201 -156358152 - MER5A DNA MER1_type -94 95 7 2191 121 0 13 chr1 86306325 86306639 -156357714 - AluJb SINE Alu -2 310 1 1054 257 30 35 chr1 86306720 86307125 -156357228 + L1MEc LINE L1 35 437 -5959 996 227 60 54 chr1 86307202 86307353 -156357000 + MER63 DNA MER1_type 681 830 -231 1912 172 0 0 chr1 86307353 86307656 -156356697 + AluSx SINE Alu 1 303 -9 996 227 60 54 chr1 86307656 86307857 -156356496 + MER63 DNA MER1_type 830 1035 -26 3045 261 82 37 chr1 86307880 86308193 -156356160 + L1MEc LINE L1 512 809 -5587 1878 167 34 0 chr1 86308193 86308487 -156355866 + AluJo SINE Alu 1 304 -8 3045 261 82 37 chr1 86308487 86308965 -156355388 + L1MEc LINE L1 809 1264 -5132 1769 167 23 10 chr1 86308965 86309264 -156355089 + AluSx SINE Alu 1 303 -9 3045 261 82 37 chr1 86309264 86309717 -156354636 + L1MEc LINE L1 1264 1695 -4701 2244 80 35 0 chr1 86309717 86310003 -156354350 + AluSp SINE Alu 1 296 -17 3045 261 82 37 chr1 86310003 86310442 -156353911 + L1MEc LINE L1 1695 2274 -4122 1191 219 146 14 chr1 86310498 86311006 -156353347 + L1MEc LINE L1 2821 3395 -2820 4467 152 32 55 chr1 86311041 86311219 -156353134 + L1MB7 LINE L1 4862 5043 -1141 1703 161 20 10 chr1 86311219 86311511 -156352842 + AluJo SINE Alu 2 296 -16 4467 152 32 55 chr1 86311511 86311601 -156352752 + L1MB7 LINE L1 5043 5134 -1050 1192 160 17 67 chr1 86311601 86311852 -156352501 + L1MB3 LINE L1 5896 6131 -52 2091 114 3 10 chr1 86311852 86312150 -156352203 + AluSc SINE Alu 1 296 -13 1192 160 17 67 chr1 86312150 86312198 -156352155 + L1MB3 LINE L1 6131 6180 -3 4467 152 32 55 chr1 86312198 86313015 -156351338 + L1MB7 LINE L1 5134 5906 -278 1738 164 24 17 chr1 86313015 86313307 -156351046 + AluJb SINE Alu 1 294 -18 4467 152 32 55 chr1 86313307 86313562 -156350791 + L1MB7 LINE L1 5906 6165 -19 2331 87 3 7 chr1 86313584 86313883 -156350470 + AluSp SINE Alu 1 298 -15 1085 269 25 40 chr1 86313883 86314019 -156350334 + L1MEc LINE L1 3413 3549 -2666 2487 63 7 0 chr1 86314019 86314321 -156350032 + AluY SINE Alu 1 304 -7 1085 269 25 40 chr1 86314321 86314738 -156349615 + L1MEc LINE L1 3549 3958 -2257 2332 130 37 49 chr1 86314860 86314930 -156349423 - MSTC LTR MaLR -3 425 356 770 146 31 23 chr1 86314930 86315060 -156349293 - FLAM_C SINE Alu -2 131 1 2332 130 37 49 chr1 86315060 86315419 -156348934 - MSTC LTR MaLR -72 356 1 1001 151 65 5 chr1 86315539 86315725 -156348628 + MLT1A1 LTR MaLR 169 365 0 1381 209 70 21 chr1 86316932 86317082 -156347271 + MER82 DNA MER2_type 32 173 -480 2130 132 6 3 chr1 86317082 86317393 -156346960 - AluSx SINE Alu 0 312 1 1381 209 70 21 chr1 86317393 86317791 -156346562 + MER82 DNA MER2_type 173 652 -1 280 91 0 45 chr1 86317793 86317837 -156346516 + MER8 DNA MER2_type 2 43 -196 2365 112 0 0 chr1 86318010 86318314 -156346039 + AluSx SINE Alu 3 306 -6 1606 154 3 69 chr1 86318456 86318774 -156345579 - AluJb SINE Alu -15 297 1 302 260 148 36 chr1 86318778 86318974 -156345379 - L1ME LINE L1 -301 5820 5603 1658 69 5 0 chr1 86319083 86319287 -156345066 + AluSp SINE Alu 37 241 -72 23 0 0 0 chr1 86319287 86319310 -156345043 + AT_rich Low_complexity Low_complexity 1 23 0 2103 97 12 78 chr1 86319494 86319825 -156344528 + AluSx SINE Alu 3 311 -1 1741 166 3 3 chr1 86319935 86320242 -156344111 - AluJo SINE Alu 0 307 1 2814 160 51 0 chr1 86320319 86320850 -156343503 - L1MB3 LINE L1 0 6183 5626 1942 137 13 0 chr1 86321244 86321551 -156342802 + AluSq SINE Alu 1 311 -2 1073 174 12 0 chr1 86321934 86322106 -156342247 - AluJo SINE Alu -19 293 120 2100 123 10 0 chr1 86322128 86322421 -156341932 - AluSg SINE Alu -14 296 1 872 138 0 0 chr1 86322425 86322548 -156341805 - AluJo SINE Alu -184 128 6 273 256 77 0 chr1 86322588 86322666 -156341687 + L1MC4a LINE L1 6504 6587 -1221 263 164 233 0 chr1 86322667 86322740 -156341613 + L1MC4 LINE L1 7482 7571 -471 1066 179 0 0 chr1 86322754 86322927 -156341426 + AluJb SINE Alu 137 309 -3 1843 169 3 10 chr1 86322932 86323240 -156341113 + AluJb SINE Alu 1 306 -6 688 185 137 10 chr1 86323247 86323452 -156340901 + L1MC4 LINE L1 7599 7829 -213 452 281 154 71 chr1 86323500 86323838 -156340515 - L3 LINE CR1 -302 1275 910 2431 74 0 3 chr1 86323862 86324159 -156340194 - AluSp SINE Alu -17 296 1 196 375 69 0 chr1 86324230 86324302 -156340051 + L2 LINE L2 2565 2641 -673 269 297 130 61 chr1 86324764 86325010 -156339343 - L3 LINE CR1 -847 730 468 25 0 0 0 chr1 86325783 86325808 -156338545 + AT_rich Low_complexity Low_complexity 1 25 0 2022 116 7 0 chr1 86325870 86326163 -156338190 + AluSx SINE Alu 1 295 -17 1940 138 0 21 chr1 86326361 86326650 -156337703 + AluSx SINE Alu 6 288 -24 491 269 93 96 chr1 86326735 86327110 -156337243 - L2 LINE L2 -8 3305 2932 2241 111 3 7 chr1 86327870 86328176 -156336177 - AluSx SINE Alu -7 305 1 268 202 144 58 chr1 86328471 86328575 -156335778 + MIR SINE MIR 33 145 -63 532 70 0 0 chr1 86328705 86328776 -156335577 + AluJ/FRAM SINE Alu 231 301 -11 255 329 0 14 chr1 86328788 86328858 -156335495 - MIR3 SINE MIR -131 77 9 2041 125 0 7 chr1 86329564 86329868 -156334485 - AluSx SINE Alu -10 302 1 412 285 7 1 chr1 86329988 86330138 -156334215 + L1MB7 LINE L1 5980 6138 -29 2049 99 10 33 chr1 86330369 86330671 -156333682 - AluSx SINE Alu -17 295 1 497 154 45 18 chr1 86330877 86330981 -156333372 + MER65B LTR ERV1 40 146 -385 365 227 60 54 chr1 86330981 86331108 -156333245 + FLAM_A SINE Alu 1 107 -26 1508 131 49 0 chr1 86331142 86331409 -156332944 + MER65A LTR ERV1 166 445 0 633 335 45 0 chr1 86331614 86331835 -156332518 + MIR SINE MIR 30 260 -2 510 176 0 29 chr1 86331923 86332025 -156332328 - Tigger7 DNA MER2_type 0 2587 2489 * 998 201 15 0 chr1 86332023 86332222 -156332131 - Tigger7 DNA MER2_type -2220 267 66 557 209 178 37 chr1 86332378 86332541 -156331812 - MER5A DNA MER1_type -3 186 1 444 208 19 36 chr1 86332641 86332770 -156331583 + MER5A DNA MER1_type 2 189 0 1962 125 0 0 chr1 86333424 86333704 -156330649 + AluSx SINE Alu 1 280 -32 875 226 91 52 chr1 86334407 86334716 -156329637 + L1ME3A LINE L1 5837 6157 -13 2186 132 0 0 chr1 86334779 86335082 -156329271 + AluSx SINE Alu 1 303 -9 24 32 0 0 chr1 86335709 86335740 -156328613 + AT_rich Low_complexity Low_complexity 1 31 0 1750 167 3 3 chr1 86336289 86336576 -156327777 - AluJo SINE Alu -24 288 2 215 172 46 35 chr1 86336866 86336953 -156327400 + A-rich Low_complexity Low_complexity 1 88 0 2142 117 7 0 chr1 86337167 86337465 -156326888 + AluSx SINE Alu 1 300 -12 1603 138 78 21 chr1 86339413 86339695 -156324658 - AluJo SINE Alu -14 298 1 22 35 0 0 chr1 86341165 86341194 -156323159 + AT_rich Low_complexity Low_complexity 1 29 0 2421 47 0 56 chr1 86341709 86342029 -156322324 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr1 86343580 86343603 -156320750 + GC_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr1 86343606 86343632 -156320721 + (CTG)n Simple_repeat Simple_repeat 3 28 0 686 265 163 27 chr1 86343943 86344317 -156320036 + L2 LINE L2 2868 3292 -21 2172 95 6 38 chr1 86344778 86345094 -156319259 + AluSx SINE Alu 1 306 -6 285 290 123 26 chr1 86345183 86345296 -156319057 - MIR SINE MIR -1 261 128 1166 291 99 7 chr1 86345296 86345708 -156318645 + LTR16A LTR ERVL 1 450 0 285 290 123 26 chr1 86345708 86345749 -156318604 - MIR SINE MIR -134 128 92 1295 172 146 4 chr1 86346198 86346465 -156317888 - AluSx SINE Alu -7 305 1 570 283 75 27 chr1 86346738 86346925 -156317428 - L2 LINE L2 -37 3235 3040 1631 164 72 39 chr1 86346927 86347780 -156316573 + SVA Other Other 391 868 -518 2413 52 10 0 chr1 86347963 86348251 -156316102 - AluY SINE Alu -20 291 1 188 278 111 0 chr1 86348432 86348504 -156315849 - L2 LINE L2 -273 2999 2920 290 240 184 16 chr1 86348593 86348674 -156315679 - L1ME4a LINE L1 -222 5899 5833 1774 182 0 10 chr1 86348674 86348976 -156315377 + AluJo SINE Alu 1 299 -13 290 240 184 16 chr1 86348976 86349019 -156315334 - L1ME4a LINE L1 -288 5833 5754 623 328 69 23 chr1 86349156 86349592 -156314761 - L2 LINE L2 -870 2444 1989 281 327 182 0 chr1 86349604 86349714 -156314639 - L2 LINE L2 -4 3268 3139 1653 174 26 22 chr1 86349896 86350207 -156314146 + AluJb SINE Alu 1 312 0 309 51 0 0 chr1 86350547 86350586 -156313767 + (TG)n Simple_repeat Simple_repeat 2 40 0 654 252 119 45 chr1 86350601 86350911 -156313442 - L1MC4 LINE L1 -186 7856 7524 2259 87 7 17 chr1 86350927 86351227 -156313126 + AluSq SINE Alu 1 297 -16 1822 131 76 0 chr1 86351234 86351509 -156312844 + AluSx SINE Alu 1 296 -16 6384 83 21 12 chr1 86351516 86352106 -156312247 + L1PB2 LINE L1 5192 5795 -356 2313 106 0 0 chr1 86352106 86352407 -156311946 + AluSq SINE Alu 5 305 -8 6384 83 21 12 chr1 86352407 86352761 -156311592 + L1PB2 LINE L1 5795 6144 -7 260 250 0 0 chr1 86352798 86352854 -156311499 - L1MC4 LINE L1 -551 7491 7436 2352 85 7 0 chr1 86352880 86353173 -156311180 + AluSx SINE Alu 8 302 -10 489 320 67 32 chr1 86353404 86353688 -156310665 + LTR16A LTR ERVL 157 450 0 191 375 71 18 chr1 86353688 86353800 -156310553 - MIR SINE MIR -116 146 29 2404 81 7 0 chr1 86353837 86354135 -156310218 - AluSq SINE Alu -13 300 1 1920 155 0 20 chr1 86354356 86354659 -156309694 + AluJb SINE Alu 1 297 -15 225 0 0 0 chr1 86354659 86354684 -156309669 + (TA)n Simple_repeat Simple_repeat 2 26 0 307 227 0 15 chr1 86354851 86354917 -156309436 + MIR SINE MIR 46 110 -152 1092 164 31 27 chr1 86355225 86355450 -156308903 + AluJo SINE Alu 84 309 -3 835 172 0 28 chr1 86355507 86355652 -156308701 + AluJo SINE Alu 1 141 -171 26 0 0 0 chr1 86355669 86355695 -156308658 + AT_rich Low_complexity Low_complexity 1 26 0 2123 141 7 0 chr1 86355697 86356002 -156308351 + AluSx SINE Alu 1 307 -5 2301 90 3 0 chr1 86356898 86357188 -156307165 + AluSx SINE Alu 1 291 -21 2215 88 7 36 chr1 86358163 86358470 -156305883 - AluSg SINE Alu -12 298 1 1164 132 0 6 chr1 86358593 86358775 -156305578 - AluY SINE Alu -8 303 123 476 103 0 0 chr1 86358881 86358949 -156305404 - Alu SINE Alu -242 69 2 6294 81 16 26 chr1 86359177 86359389 -156304964 + L1PA10 LINE L1 5269 5482 -686 1896 140 18 3 chr1 86359389 86359675 -156304678 + AluSx SINE Alu 1 290 -22 6294 81 16 26 chr1 86359675 86360366 -156303987 + L1PA10 LINE L1 5482 6162 -6 704 200 0 0 chr1 86360387 86360497 -156303856 + FLAM_A SINE Alu 1 110 -32 1143 192 42 54 chr1 86360498 86360759 -156303594 + AluJo SINE Alu 25 282 -30 23 54 0 0 chr1 86360759 86360796 -156303557 + AT_rich Low_complexity Low_complexity 1 37 0 2137 133 7 0 chr1 86360848 86361148 -156303205 - AluSx SINE Alu -9 303 2 314 250 190 0 chr1 86361373 86361473 -156302880 + L2 LINE L2 3190 3308 -5 1692 131 7 82 chr1 86361710 86361811 -156302542 + AluJb SINE Alu 30 137 -175 2208 127 7 0 chr1 86361811 86362118 -156302235 - AluSq SINE Alu -4 309 1 1692 131 7 82 chr1 86362118 86362322 -156302031 + AluJb SINE Alu 137 312 0 291 28 0 0 chr1 86362467 86362503 -156301850 + (A)n Simple_repeat Simple_repeat 1 36 0 229 261 46 0 chr1 86363068 86363133 -156301220 + LTR67 LTR ERVL 476 543 -14 605 286 90 82 chr1 86363399 86363671 -156300682 + L2 LINE L2 2783 3055 -258 2193 110 17 0 chr1 86363671 86363971 -156300382 + AluSq SINE Alu 1 305 -8 605 286 90 82 chr1 86363971 86364086 -156300267 + L2 LINE L2 3055 3168 -145 484 96 0 60 chr1 86364112 86364195 -156300158 + AluJb SINE Alu 58 135 -177 996 200 165 23 chr1 86364195 86364455 -156299898 + AluJb SINE Alu 1 297 -15 2395 98 0 0 chr1 86365513 86365819 -156298534 - AluSx SINE Alu -6 306 1 787 223 32 6 chr1 86365821 86365978 -156298375 - FRAM SINE Alu -15 161 1 28 0 0 0 chr1 86365989 86366017 -156298336 + AT_rich Low_complexity Low_complexity 1 28 0 2024 230 180 17 chr1 86366046 86366790 -156297563 - L1ME1 LINE L1 -58 6108 5225 956 324 99 7 chr1 86366796 86367401 -156296952 + ERVL LTR ERVL 4404 5029 -456 856 253 116 64 chr1 86367470 86367909 -156296444 - MLT1C LTR MaLR 0 467 6 534 279 55 13 chr1 86367914 86368096 -156296257 + ERVL LTR ERVL 5095 5339 -376 275 239 142 52 chr1 86368343 86368477 -156295876 + ERVL LTR ERVL 5612 5757 -7 680 201 88 57 chr1 86369036 86369176 -156295177 - L1MC4 LINE L1 -498 7544 7410 717 219 39 0 chr1 86369176 86369304 -156295049 - FLAM_A SINE Alu 0 133 1 680 201 88 57 chr1 86369304 86369551 -156294802 - L1MC4 LINE L1 -632 7410 6997 1596 182 7 27 chr1 86369551 86369848 -156294505 + AluJo SINE Alu 1 291 -21 212 137 20 0 chr1 86369855 86369906 -156294447 + (TA)n Simple_repeat Simple_repeat 2 53 0 202 216 0 0 chr1 86369949 86370000 -156294353 + (TA)n Simple_repeat Simple_repeat 2 52 0 198 156 0 0 chr1 86370060 86370105 -156294248 + (TA)n Simple_repeat Simple_repeat 2 46 0 415 196 46 98 chr1 86370105 86370193 -156294160 - L1MC4a LINE L1 -1115 6693 6615 312 91 0 0 chr1 86370193 86370237 -156294116 + (CA)n Simple_repeat Simple_repeat 2 45 0 415 196 46 98 chr1 86370237 86370301 -156294052 - L1MC4a LINE L1 -1193 6615 6549 478 209 0 29 chr1 86370407 86370512 -156293841 - L1MC4 LINE L1 -1451 6591 6490 1999 136 4 0 chr1 86371702 86371982 -156292371 + AluSx SINE Alu 1 281 -31 303 28 0 0 chr1 86371982 86372018 -156292335 + (CA)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr1 86372692 86372716 -156291637 + AT_rich Low_complexity Low_complexity 1 24 0 1554 123 0 5 chr1 86372764 86372983 -156291370 + AluSg/x SINE Alu 66 283 -26 1505 173 0 85 chr1 86373004 86373333 -156291020 + AluJb SINE Alu 1 301 -11 21 36 0 0 chr1 86373457 86373485 -156290868 + AT_rich Low_complexity Low_complexity 1 28 0 1557 173 0 56 chr1 86373847 86374153 -156290200 - AluJo SINE Alu -23 289 1 890 201 0 0 chr1 86374154 86374308 -156290045 - FRAM SINE Alu -23 153 1 185 270 63 16 chr1 86374816 86374879 -156289474 + L2 LINE L2 3202 3267 -5 2275 97 0 0 chr1 86375662 86375960 -156288393 - AluSg SINE Alu -11 299 2 223 244 0 0 chr1 86376393 86376434 -156287919 + L2 LINE L2 3201 3241 -31 1727 159 3 24 chr1 86376508 86376804 -156287549 - AluJo SINE Alu -10 302 13 2994 111 61 29 chr1 86376812 86377289 -156287064 - LTR22B LTR ERVK 0 492 1 2177 98 7 3 chr1 86377313 86377600 -156286753 - AluSq SINE Alu -4 309 22 355 98 0 0 chr1 86377707 86377758 -156286595 + Alu SINE Alu 248 298 -3 816 173 0 30 chr1 86377930 86378063 -156286290 - AluJb SINE Alu -181 131 3 22 0 0 0 chr1 86378065 86378087 -156286266 + AT_rich Low_complexity Low_complexity 1 22 0 1547 117 13 4 chr1 86378978 86379208 -156285145 + AluSg/x SINE Alu 79 310 0 2128 102 3 3 chr1 86379329 86379614 -156284739 + AluSc SINE Alu 1 285 -24 2287 109 0 3 chr1 86379821 86380125 -156284228 + AluSx SINE Alu 1 303 -9 1827 176 6 10 chr1 86380130 86380443 -156283910 + AluJb SINE Alu 1 312 0 21 36 0 0 chr1 86380483 86380511 -156283842 + AT_rich Low_complexity Low_complexity 1 28 0 287 210 16 16 chr1 86381671 86381733 -156282620 - L2 LINE L2 0 3272 3211 189 94 0 0 chr1 86382608 86382640 -156281713 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr1 86382812 86382833 -156281520 + AT_rich Low_complexity Low_complexity 1 21 0 337 104 0 0 chr1 86383498 86383546 -156280807 - Alu SINE Alu -254 48 1 2017 128 3 30 chr1 86383611 86383746 -156280607 + AluSx SINE Alu 2 139 -173 2411 84 0 3 chr1 86383746 86384056 -156280297 + AluY SINE Alu 1 309 -2 2017 128 3 30 chr1 86384056 86384225 -156280128 + AluSx SINE Alu 139 298 -14 1790 140 3 54 chr1 86384747 86385062 -156279291 - AluJb SINE Alu -13 299 1 2277 93 0 0 chr1 86385539 86385830 -156278523 + AluY SINE Alu 1 291 -20 24 0 0 0 chr1 86386123 86386147 -156278206 + AT_rich Low_complexity Low_complexity 1 24 0 690 193 22 0 chr1 86387295 86387430 -156276923 - Charlie4 DNA MER1_type -6 1955 1818 1057 182 6 6 chr1 86387483 86387664 -156276689 + AluSx SINE Alu 1 181 -131 1841 159 10 3 chr1 86388207 86388509 -156275844 + AluJb SINE Alu 1 304 -8 1345 159 35 17 chr1 86388658 86388890 -156275463 + MER46A DNA MER2_type 1 236 0 23 68 0 0 chr1 86389387 86389431 -156274922 + AT_rich Low_complexity Low_complexity 1 44 0 2561 63 0 0 chr1 86389937 86390238 -156274115 + AluY SINE Alu 2 302 -9 414 61 212 0 chr1 86390248 86390314 -156274039 + MER116 DNA Mariner 1 80 0 2246 110 0 0 chr1 86391710 86392001 -156272352 - AluSc SINE Alu -18 291 1 22 35 0 0 chr1 86392040 86392069 -156272284 + AT_rich Low_complexity Low_complexity 1 29 0 2351 90 0 0 chr1 86393573 86393873 -156270480 - AluY SINE Alu -11 300 1 617 180 68 87 chr1 86394940 86395146 -156269207 - MER105 DNA DNA -2 202 1 2458 70 3 7 chr1 86395448 86395748 -156268605 - AluSq SINE Alu -14 299 1 25 65 0 0 chr1 86396904 86396950 -156267403 + AT_rich Low_complexity Low_complexity 1 46 0 791 221 22 54 chr1 86397362 86397584 -156266769 - MER20 DNA MER1_type 0 219 5 2268 87 0 7 chr1 86398009 86398338 -156266015 - AluSp SINE Alu 0 327 1 446 18 0 0 chr1 86398401 86398456 -156265897 - L1PA6 LINE L1 -5 6149 6095 868 200 0 0 chr1 86398571 86398721 -156265632 - AluJb SINE Alu -15 297 148 999 264 86 32 chr1 86398721 86398942 -156265411 + L1MEc LINE L1 446 653 -5743 2163 107 17 0 chr1 86398942 86399232 -156265121 + AluSc SINE Alu 1 295 -14 999 264 86 32 chr1 86399232 86399450 -156264903 + L1MEc LINE L1 653 909 -5487 1746 188 0 3 chr1 86399655 86399953 -156264400 + AluJo SINE Alu 1 297 -15 5390 64 8 0 chr1 86399953 86400699 -156263654 - L1P LINE L1 -3428 2718 1967 9697 43 3 1 chr1 86400701 86401991 -156262362 + L1P LINE L1 2715 4007 -2139 226 300 7 21 chr1 86401994 86402134 -156262219 - L1MC/D LINE L1 -2363 5445 5308 540 181 12 100 chr1 86402224 86402334 -156262019 - L1MC/D LINE L1 -1228 4918 4825 1619 186 6 47 chr1 86402334 86402651 -156261702 - AluJo SINE Alu -8 304 1 540 181 12 100 chr1 86402651 86402700 -156261653 - L1MC/D LINE L1 -1321 4825 4773 384 265 125 40 chr1 86402858 86403058 -156261295 - L1 LINE L1 -1136 5010 4794 2180 115 3 3 chr1 86403487 86403782 -156260571 + AluSg SINE Alu 5 299 -11 391 279 185 35 chr1 86404263 86404467 -156259886 - L1 LINE L1 -2824 3322 3061 2255 132 0 0 chr1 86404467 86404777 -156259576 - AluSx SINE Alu -2 310 1 391 279 185 35 chr1 86404777 86404859 -156259494 - L1 LINE L1 -3085 3061 2993 2058 134 24 0 chr1 86405138 86405436 -156258917 + AluSx SINE Alu 1 305 -7 1615 154 49 8 chr1 86405446 86405713 -156258640 + AluJb SINE Alu 1 278 -34 588 65 0 0 chr1 86405717 86405794 -156258559 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 1867 151 0 26 chr1 86406466 86406771 -156257582 + AluJo SINE Alu 1 297 -15 2452 56 0 0 chr1 86406791 86407078 -156257275 - AluY SINE Alu -19 292 6 1246 136 0 6 chr1 86407236 86407412 -156256941 - AluSg/x SINE Alu -16 294 120 364 327 96 19 chr1 86407563 86407690 -156256663 + L3 LINE CR1 636 787 -790 2098 131 0 3 chr1 86407690 86407996 -156256357 + AluSq SINE Alu 1 305 -8 364 327 96 19 chr1 86407996 86408076 -156256277 + L3 LINE CR1 787 859 -718 768 149 0 45 chr1 86408201 86408335 -156256018 + FLAM_C SINE Alu 2 129 -4 323 314 41 8 chr1 86408561 86408682 -156255671 + MIR SINE MIR 63 187 -75 25 90 0 0 chr1 86408682 86408749 -156255604 + AT_rich Low_complexity Low_complexity 1 67 0 229 266 62 0 chr1 86408749 86408813 -156255540 + MIR SINE MIR 193 260 -2 1824 157 7 7 chr1 86410308 86410602 -156253751 + AluSx SINE Alu 1 294 -18 674 206 0 22 chr1 86411000 86411136 -156253217 - FLAM_A SINE Alu 0 133 1 2391 64 24 3 chr1 86413070 86413368 -156250985 - AluY SINE Alu -7 304 1 320 192 80 53 chr1 86415427 86415578 -156248775 + Charlie7 DNA MER1_type 5 159 -2453 1867 157 28 0 chr1 86415663 86415949 -156248404 + AluJo SINE Alu 4 297 -15 2286 104 0 3 chr1 86415979 86416287 -156248066 + AluSx SINE Alu 1 307 -5 211 225 0 0 chr1 86416309 86416349 -156248004 + A-rich Low_complexity Low_complexity 2 41 0 616 116 0 0 chr1 86416670 86416756 -156247597 + AluS SINE Alu 3 88 -225 206 317 85 0 chr1 86417134 86417216 -156247137 + MER91C DNA MER1_type 17 105 -35 343 248 28 62 chr1 86417245 86417390 -156246963 + GA-rich Low_complexity Low_complexity 1 140 0 256 233 164 0 chr1 86417721 86417794 -156246559 + L2 LINE L2 3136 3220 -52 233 200 0 50 chr1 86417815 86417875 -156246478 + MER20 DNA MER1_type 4 60 -159 2309 95 3 0 chr1 86417998 86418294 -156246059 + AluSq SINE Alu 1 297 -16 1679 170 29 13 chr1 86418304 86418610 -156245743 + AluJb SINE Alu 1 311 -1 1649 169 10 32 chr1 86418703 86419011 -156245342 + AluJo SINE Alu 1 301 -11 1752 121 0 38 chr1 86419550 86419815 -156244538 - AluSx SINE Alu -57 255 1 1015 185 22 5 chr1 86420142 86420326 -156244027 - MER20 DNA MER1_type -26 193 7 1969 168 0 0 chr1 86420630 86420933 -156243420 - AluJb SINE Alu -9 303 1 276 250 0 0 chr1 86421181 86421237 -156243116 - AluS SINE Alu -244 57 2 468 102 10 61 chr1 86421399 86421497 -156242856 - L1MB8 LINE L1 0 6178 6086 257 330 201 17 chr1 86421497 86421855 -156242498 - L2 LINE L2 -339 2975 2552 210 381 40 8 chr1 86421930 86422056 -156242297 + L2 LINE L2 2601 2730 -584 1220 95 0 95 chr1 86422442 86422522 -156241831 - MER30B DNA MER1_type 0 190 104 2396 86 0 7 chr1 86422522 86422826 -156241527 - AluSq SINE Alu -11 302 1 1220 95 0 95 chr1 86422826 86422955 -156241398 - MER30B DNA MER1_type -86 104 1 181 372 97 0 chr1 86423092 86423205 -156241148 + L2 LINE L2 3171 3294 -19 1646 152 0 0 chr1 86423627 86423883 -156240470 + AluSx SINE Alu 54 309 -3 21 0 0 0 chr1 86423884 86423905 -156240448 + AT_rich Low_complexity Low_complexity 1 21 0 741 204 11 31 chr1 86423905 86424096 -156240257 - L1MB8 LINE L1 -111 6067 5881 249 91 0 0 chr1 86424096 86424140 -156240213 - Alu SINE Alu 0 300 257 437 294 77 52 chr1 86424254 86424540 -156239813 - L2 LINE L2 -560 2754 2462 356 246 79 16 chr1 86424573 86424676 -156239677 - MIR SINE MIR -67 141 62 1748 171 3 13 chr1 86424676 86424980 -156239373 - AluJo SINE Alu -10 302 2 356 246 79 16 chr1 86424980 86425000 -156239353 - MIR SINE MIR -146 62 45 774 114 45 45 chr1 86425132 86425264 -156239089 + FLAM_C SINE Alu 1 132 -1 389 318 207 24 chr1 86425542 86425875 -156238478 - L2 LINE L2 -1017 2297 1904 24 53 0 0 chr1 86426211 86426249 -156238104 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr1 86426800 86426837 -156237516 + AT_rich Low_complexity Low_complexity 1 37 0 2058 157 3 0 chr1 86427106 86427412 -156236941 - AluSx SINE Alu -5 307 1 729 187 8 22 chr1 86427416 86427550 -156236803 - FLAM_C SINE Alu 0 133 2 1705 197 0 20 chr1 86427596 86427896 -156236457 + AluJo SINE Alu 1 294 -18 201 313 30 0 chr1 86429851 86429918 -156234435 - L2 LINE L2 -14 3258 3190 1809 167 10 7 chr1 86430138 86430437 -156233916 - AluJo SINE Alu -12 300 1 2120 130 0 0 chr1 86430556 86430855 -156233498 + AluSx SINE Alu 5 303 -9 1706 227 34 72 chr1 86431359 86431739 -156232614 - L1ME1 LINE L1 -20 6146 5800 1972 115 59 3 chr1 86431739 86432026 -156232327 - AluSg SINE Alu -7 303 1 1706 227 34 72 chr1 86432026 86432302 -156232051 - L1ME1 LINE L1 -366 5800 5515 670 180 175 18 chr1 86432311 86432539 -156231814 + L1M4 LINE L1 5036 5299 -847 1058 85 0 0 chr1 86432838 86432967 -156231386 + AluYb8 SINE Alu 1 129 -189 1266 73 0 0 chr1 86433067 86433244 -156231109 - THE1B-int LTR MaLR -1403 177 1 2005 128 81 23 chr1 86433244 86433588 -156230765 - THE1B LTR MaLR 0 364 1 2835 192 110 36 chr1 86433589 86433709 -156230644 - L1M3 LINE L1 -730 5450 5340 2037 132 0 13 chr1 86433709 86434012 -156230341 - AluSx SINE Alu -13 299 1 2835 192 110 36 chr1 86434012 86434131 -156230222 - L1M3 LINE L1 -840 5340 5231 2289 110 3 13 chr1 86434131 86434305 -156230048 - AluSx SINE Alu -5 307 136 2126 122 0 50 chr1 86434305 86434625 -156229728 - AluSx SINE Alu -8 304 1 2289 110 3 13 chr1 86434625 86434760 -156229593 - AluSx SINE Alu -176 136 1 2835 192 110 36 chr1 86434760 86435511 -156228842 - L1M3 LINE L1 -949 5231 4375 1733 166 19 26 chr1 86435524 86435832 -156228521 - AluJb SINE Alu -6 306 1 1073 176 74 85 chr1 86435839 86436192 -156228161 - L1MC5 LINE L1 -921 7040 6692 2493 188 127 69 chr1 86436315 86436621 -156227732 - L1MD2 LINE L1 -2 6357 6070 2126 82 0 0 chr1 86436621 86436888 -156227465 - AluY SINE Alu -44 267 1 2493 188 127 69 chr1 86436888 86436911 -156227442 - L1MD2 LINE L1 -289 6070 6050 2243 107 0 7 chr1 86436911 86437210 -156227143 - AluSq SINE Alu -16 297 1 2493 188 127 69 chr1 86437210 86437289 -156227064 - L1MD2 LINE L1 -309 6050 5977 1608 186 33 16 chr1 86437289 86437595 -156226758 + AluJo SINE Alu 1 311 -1 2493 188 127 69 chr1 86437595 86437884 -156226469 - L1MD2 LINE L1 -382 5977 5598 2190 123 7 0 chr1 86437884 86438184 -156226169 - AluSx SINE Alu -10 302 1 2493 188 127 69 chr1 86438184 86438333 -156226020 - L1MD2 LINE L1 -761 5598 5459 1322 247 91 80 chr1 86438333 86438936 -156225417 - LTR38 LTR ERV1 0 556 1 898 106 0 111 chr1 86438936 86439107 -156225246 - L1MC/D LINE L1 -780 5462 5274 2349 92 0 10 chr1 86439107 86439411 -156224942 - AluSx SINE Alu -11 301 1 1833 178 10 0 chr1 86439414 86439723 -156224630 - AluJb SINE Alu 0 312 1 898 106 0 111 chr1 86439723 86439755 -156224598 - L1MC/D LINE L1 -930 5312 5278 225 65 0 0 chr1 86439757 86439788 -156224565 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1899 132 20 34 chr1 86439790 86440085 -156224268 - AluSx SINE Alu -21 291 1 2312 106 0 6 chr1 86440097 86440409 -156223944 - AluSx SINE Alu -2 310 1 1553 199 93 44 chr1 86440410 86440913 -156223440 - L1MD3 LINE L1 -8 7987 7460 379 212 0 0 chr1 86440913 86440979 -156223374 + AluJ/FLAM SINE Alu 1 66 -236 938 179 7 20 chr1 86440979 86441130 -156223223 + AluJo/FRAM SINE Alu 140 288 -14 517 198 208 19 chr1 86441146 86441285 -156223068 - L1MC4a LINE L1 -513 7295 7184 2202 120 0 3 chr1 86441285 86441585 -156222768 - AluSx SINE Alu -13 299 1 517 198 208 19 chr1 86441585 86441657 -156222696 - L1MC4a LINE L1 -624 7184 7044 1461 171 107 0 chr1 86441658 86441938 -156222415 - AluJb SINE Alu -2 310 1 2029 94 7 14 chr1 86441949 86442224 -156222129 - AluSx SINE Alu -9 303 31 1986 238 84 80 chr1 86442224 86442443 -156221910 - L1MD3 LINE L1 -1406 6589 6372 2376 71 3 7 chr1 86442443 86442739 -156221614 - AluY SINE Alu -16 295 1 1034 189 0 12 chr1 86442743 86442907 -156221446 - FRAM SINE Alu -4 162 1 1986 238 84 80 chr1 86442907 86443555 -156220798 - L1MD3 LINE L1 -1625 6370 5714 2423 225 115 20 chr1 86443592 86444429 -156219924 - L1MD3 LINE L1 -1254 4892 3977 1191 227 159 31 chr1 86444430 86444627 -156219726 - MLT1C LTR MaLR 0 467 297 2236 128 45 31 chr1 86444627 86444986 -156219367 - THE1B LTR MaLR 0 364 1 1191 227 159 31 chr1 86444986 86445202 -156219151 - MLT1C LTR MaLR -170 297 1 1130 206 48 19 chr1 86445202 86445518 -156218835 - L1MD3 LINE L1 -2166 3980 3656 1307 149 17 25 chr1 86445584 86445825 -156218528 + Tigger5 DNA MER2_type 2085 2323 0 752 234 186 46 chr1 86445860 86446386 -156217967 - L1MD3 LINE L1 -2556 3590 2964 620 295 30 43 chr1 86447941 86448334 -156216019 - L1ME4a LINE L1 -16 6105 5718 568 279 81 46 chr1 86448585 86448782 -156215571 - MIR SINE MIR -12 250 47 1502 181 10 33 chr1 86448818 86449121 -156215232 + AluJo SINE Alu 7 302 -10 27 29 0 0 chr1 86449736 86449770 -156214583 + AT_rich Low_complexity Low_complexity 1 34 0 2641 106 15 23 chr1 86449993 86450390 -156213963 + L1MA3 LINE L1 5912 6305 0 1937 133 63 0 chr1 86450764 86451050 -156213303 - AluSx SINE Alu -8 304 1 1819 187 0 3 chr1 86451145 86451455 -156212898 + AluJo SINE Alu 1 309 -3 441 54 0 0 chr1 86451460 86451516 -156212837 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 1658 251 64 39 chr1 86451576 86451826 -156212527 + MER21B LTR ERV1 13 282 -581 3413 161 26 2 chr1 86451826 86452367 -156211986 + MER41C LTR ERV1 1 554 0 1658 251 64 39 chr1 86452367 86452582 -156211771 + MER21B LTR ERV1 282 490 -373 804 201 68 84 chr1 86452596 86452859 -156211494 + MER21B LTR ERV1 548 806 -57 333 236 42 0 chr1 86452904 86452976 -156211377 - MIR SINE MIR -179 83 9 762 173 15 15 chr1 86453375 86453508 -156210845 - AluJo SINE Alu -178 134 2 1933 103 33 4 chr1 86453969 86454279 -156210074 - AluSx SINE Alu 0 318 1 639 111 0 0 chr1 86455199 86455289 -156209064 + 5S rRNA rRNA 1 90 -31 2255 112 0 6 chr1 86456196 86456510 -156207843 - AluSx SINE Alu 0 312 1 388 266 57 51 chr1 86456789 86456966 -156207387 - HAL1 LINE L1 -13 2494 2317 647 124 13 131 chr1 86457288 86457441 -156206912 - AluJb SINE Alu -176 136 2 4259 184 77 44 chr1 86458965 86459514 -156204839 - L1MB2 LINE L1 -4 6167 5638 246 32 0 0 chr1 86459514 86459545 -156204808 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1513 198 43 4 chr1 86459549 86459827 -156204526 - AluJo SINE Alu -23 289 1 4259 184 77 44 chr1 86459827 86460000 -156204353 - L1MB2 LINE L1 -535 5636 5470 2298 139 80 0 chr1 86460000 86460337 -156204016 - THE1B LTR MaLR 0 364 1 12911 82 3 9 chr1 86460337 86460647 -156203706 - THE1B-int LTR MaLR 0 1580 1270 2368 91 3 0 chr1 86460647 86460944 -156203409 - AluSp SINE Alu -15 298 1 12911 82 3 9 chr1 86460944 86462223 -156202130 - THE1B-int LTR MaLR -310 1270 1 2170 128 81 23 chr1 86462223 86462567 -156201786 - THE1B LTR MaLR 0 364 1 4259 184 77 44 chr1 86462567 86462688 -156201665 - L1MB2 LINE L1 -701 5470 5355 2041 129 0 13 chr1 86462688 86462991 -156201362 - AluSx SINE Alu -13 299 1 4259 184 77 44 chr1 86462991 86463110 -156201243 - L1MB2 LINE L1 -816 5355 5241 2218 119 3 13 chr1 86463110 86463286 -156201067 - AluSx SINE Alu -3 309 136 2112 122 0 50 chr1 86463286 86463606 -156200747 - AluSx SINE Alu -8 304 1 2218 119 3 13 chr1 86463606 86463741 -156200612 - AluSx SINE Alu -176 136 1 4259 184 77 44 chr1 86463741 86464492 -156199861 - L1MB2 LINE L1 -930 5241 4375 1700 166 19 26 chr1 86464505 86464813 -156199540 - AluJb SINE Alu -6 306 1 1217 176 74 85 chr1 86464820 86465173 -156199180 - L1MC5 LINE L1 -921 7040 6692 3764 174 102 80 chr1 86465296 86465602 -156198751 - L1MD2 LINE L1 -2 6357 6059 2142 82 0 0 chr1 86465602 86465869 -156198484 - AluY SINE Alu -44 267 1 3764 174 102 80 chr1 86465869 86465892 -156198461 - L1MD2 LINE L1 -300 6059 6038 2237 107 0 7 chr1 86465892 86466191 -156198162 - AluSq SINE Alu -16 297 1 3764 174 102 80 chr1 86466191 86466270 -156198083 - L1MD2 LINE L1 -321 6038 5962 1531 190 33 16 chr1 86466270 86466575 -156197778 + AluJo SINE Alu 1 310 -2 3764 174 102 80 chr1 86466575 86466862 -156197491 - L1MD2 LINE L1 -397 5962 5683 2234 123 0 0 chr1 86466862 86467164 -156197189 - AluSx SINE Alu -10 302 1 3764 174 102 80 chr1 86467164 86467313 -156197040 - L1MD2 LINE L1 -676 5683 5539 1631 204 40 118 chr1 86467313 86467916 -156196437 - LTR38 LTR ERV1 0 556 1 3764 174 102 80 chr1 86467916 86468087 -156196266 - L1MD2 LINE L1 -820 5539 5373 2348 92 0 10 chr1 86468087 86468391 -156195962 - AluSx SINE Alu -11 301 1 1810 178 10 0 chr1 86468394 86468703 -156195650 - AluJb SINE Alu 0 312 1 3764 174 102 80 chr1 86468703 86468735 -156195618 - L1MD2 LINE L1 -987 5372 5278 225 65 0 0 chr1 86468737 86468768 -156195585 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1887 132 20 34 chr1 86468770 86469065 -156195288 - AluSx SINE Alu -21 291 1 2298 109 0 6 chr1 86469077 86469389 -156194964 - AluSx SINE Alu -2 310 1 1735 199 95 46 chr1 86469390 86469893 -156194460 - L1MD3 LINE L1 -8 7987 7460 379 212 0 0 chr1 86469893 86469959 -156194394 + AluJ/FLAM SINE Alu 1 66 -236 938 179 7 20 chr1 86469959 86470110 -156194243 + AluJo/FRAM SINE Alu 140 288 -14 517 198 208 19 chr1 86470126 86470265 -156194088 - L1MC4a LINE L1 -513 7295 7184 2200 120 0 3 chr1 86470265 86470565 -156193788 - AluSx SINE Alu -13 299 1 517 198 208 19 chr1 86470565 86470637 -156193716 - L1MC4a LINE L1 -624 7184 7044 1297 177 118 0 chr1 86470639 86470917 -156193436 - AluJb SINE Alu 0 308 1 2029 94 7 14 chr1 86470928 86471203 -156193150 - AluSx SINE Alu -9 303 31 1986 238 84 80 chr1 86471203 86471422 -156192931 - L1MD3 LINE L1 -1406 6589 6372 2350 74 3 7 chr1 86471422 86471718 -156192635 - AluY SINE Alu -16 295 1 1034 189 0 12 chr1 86471722 86471886 -156192467 - FRAM SINE Alu -4 162 1 1986 238 84 80 chr1 86471886 86472534 -156191819 - L1MD3 LINE L1 -1625 6370 5714 2423 225 115 20 chr1 86472571 86473408 -156190945 - L1MD3 LINE L1 -1254 4892 3977 655 218 62 5 chr1 86473409 86473602 -156190751 - MLT1C LTR MaLR 0 467 278 2311 105 47 39 chr1 86473606 86473967 -156190386 - THE1B LTR MaLR 0 364 1 741 140 15 22 chr1 86474090 86474226 -156190127 - THE1B-int LTR MaLR -171 1409 1275 2207 95 3 50 chr1 86474226 86474543 -156189810 - AluSq SINE Alu -11 302 1 2061 92 24 24 chr1 86474545 86474840 -156189513 - AluSx SINE Alu -17 295 1 182 308 143 22 chr1 86475010 86475101 -156189252 + L3 LINE CR1 1475 1576 -1 1012 136 24 18 chr1 86475118 86475287 -156189066 + FRAM SINE Alu 1 169 -7 688 134 111 88 chr1 86475788 86475949 -156188404 + AluJo SINE Alu 86 253 -59 186 43 0 0 chr1 86475949 86475972 -156188381 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1274 139 0 0 chr1 86476088 86476261 -156188092 - AluJb SINE Alu -11 301 129 950 186 0 6 chr1 86476272 86476433 -156187920 + AluJo SINE Alu 1 160 -152 1061 277 85 55 chr1 86476623 86477406 -156186947 + L1M4 LINE L1 4181 4939 -1207 2159 116 0 7 chr1 86477406 86477707 -156186646 + AluSx SINE Alu 1 299 -13 1061 277 85 55 chr1 86477707 86477718 -156186635 + L1M4 LINE L1 4939 4948 -1198 1671 140 0 103 chr1 86477718 86478039 -156186314 - AluJo SINE Alu -24 288 1 1061 277 85 55 chr1 86478039 86478194 -156186159 + L1M4 LINE L1 4948 5160 -986 1879 157 0 28 chr1 86478201 86478519 -156185834 + AluJo SINE Alu 1 309 -3 257 317 19 58 chr1 86478775 86478879 -156185474 - MER5A DNA MER1_type -18 171 72 1025 159 0 0 chr1 86479095 86479278 -156185075 - AluSg/x SINE Alu 0 305 123 945 168 0 0 chr1 86479677 86479850 -156184503 - FRAM SINE Alu 0 172 1 723 116 89 0 chr1 86479948 86480060 -156184293 + AluSg/x SINE Alu 169 290 -20 2140 121 0 7 chr1 86480070 86480367 -156183986 + AluSx SINE Alu 1 295 -17 1690 195 3 0 chr1 86480402 86480710 -156183643 + AluJo SINE Alu 1 309 0 701 269 82 16 chr1 86481121 86481366 -156182987 - MIR SINE MIR -1 261 1 2026 112 6 56 chr1 86481872 86482193 -156182160 + AluSx SINE Alu 1 305 -7 1549 157 35 28 chr1 86482614 86482900 -156181453 - AluJo SINE Alu -24 288 1 1265 164 0 18 chr1 86483394 86483620 -156180733 + AluJo SINE Alu 85 306 -6 453 210 50 25 chr1 86483726 86483845 -156180508 - L1MB7 LINE L1 -9 6175 6054 2397 95 0 0 chr1 86484035 86484340 -156180013 + AluSg SINE Alu 1 305 -5 877 209 0 0 chr1 86484738 86484896 -156179457 - FRAM SINE Alu -18 158 1 192 319 139 0 chr1 86484896 86484968 -156179385 + L3 LINE CR1 463 544 -1033 1234 151 91 19 chr1 86484973 86485114 -156179239 - L1MA9 LINE L1 0 6312 6183 191 36 36 0 chr1 86485114 86485142 -156179211 + (TG)n Simple_repeat Simple_repeat 2 30 0 1234 151 91 19 chr1 86485142 86485265 -156179088 - L1MA9 LINE L1 -129 6183 6029 731 285 28 90 chr1 86485291 86485482 -156178871 + L3 LINE CR1 582 738 -839 2217 96 7 16 chr1 86485482 86485785 -156178568 + AluSp SINE Alu 1 300 -13 731 285 28 90 chr1 86485785 86485983 -156178370 + L3 LINE CR1 738 947 -630 2309 112 0 0 chr1 86486019 86486324 -156178029 - AluSx SINE Alu -7 305 1 201 152 0 0 chr1 86486540 86486573 -156177780 + (CAA)n Simple_repeat Simple_repeat 2 34 0 473 279 137 0 chr1 86486669 86486830 -156177523 - MIR SINE MIR -71 191 9 25 0 0 0 chr1 86487044 86487069 -156177284 + AT_rich Low_complexity Low_complexity 1 25 0 180 206 0 0 chr1 86487259 86487293 -156177060 + MIR SINE MIR 2 35 -227 1661 189 7 0 chr1 86487294 86487590 -156176763 + AluJb SINE Alu 1 298 -14 2144 102 0 0 chr1 86487592 86487866 -156176487 + AluSq SINE Alu 1 274 -39 732 256 6 12 chr1 86487895 86488067 -156176286 + MIR SINE MIR 21 191 -71 2350 106 0 3 chr1 86488067 86488379 -156175974 - AluSq SINE Alu -2 311 1 672 175 0 133 chr1 86488380 86488546 -156175807 - AluJo SINE Alu -167 145 2 2383 90 3 0 chr1 86488754 86489054 -156175299 + AluSp SINE Alu 1 301 -12 979 174 12 0 chr1 86489054 86489221 -156175132 + AluJb SINE Alu 134 302 -10 2055 147 0 13 chr1 86490933 86491246 -156173107 + AluSx SINE Alu 1 309 -3 1131 131 42 37 chr1 86491255 86491446 -156172907 + AluJb SINE Alu 112 303 -9 418 234 156 78 chr1 86492191 86492314 -156172039 + MIR3 SINE MIR 17 151 -57 1050 204 0 0 chr1 86492314 86492500 -156171853 + MER5A DNA MER1_type 3 188 -1 966 219 0 0 chr1 86492616 86492785 -156171568 + FAM SINE Alu 1 169 -6 1283 184 123 8 chr1 86492999 86493260 -156171093 + AluJo SINE Alu 13 303 -9 291 75 0 0 chr1 86493570 86493610 -156170743 - Alu SINE Alu -262 40 1 604 0 0 0 chr1 86493626 86493702 -156170651 - L1HS LINE L1 0 6155 6080 660 197 52 62 chr1 86493702 86493895 -156170458 - MLT1D LTR MaLR -314 191 1 851 176 15 0 chr1 86494455 86494586 -156169767 + FRAM SINE Alu 1 133 -43 264 30 0 0 chr1 86494598 86494631 -156169722 + (CAA)n Simple_repeat Simple_repeat 2 34 0 744 191 0 22 chr1 86494944 86495080 -156169273 + FLAM_A SINE Alu 1 133 0 656 126 0 29 chr1 86495957 86496060 -156168293 + FLAM_C SINE Alu 27 126 -17 1618 148 31 9 chr1 86496288 86496606 -156167747 + L1MB7 LINE L1 5860 6184 0 30 45 0 0 chr1 86497045 86497089 -156167264 + AT_rich Low_complexity Low_complexity 1 44 0 1830 146 0 14 chr1 86497580 86497867 -156166486 - AluSx SINE Alu -29 283 1 243 213 162 29 chr1 86498174 86498310 -156166043 - L1ME4a LINE L1 -195 5926 5773 319 244 114 0 chr1 86498314 86498437 -156165916 - L1ME4a LINE L1 -1343 6699 5649 1838 188 0 7 chr1 86498448 86498746 -156165607 - AluJo SINE Alu -16 296 1 428 274 47 47 chr1 86498748 86498938 -156165415 - L1ME LINE L1 -417 5704 5515 240 223 175 68 chr1 86498962 86499065 -156165288 + L2 LINE L2 3182 3295 -18 2082 107 27 7 chr1 86499721 86500020 -156164333 + AluSx SINE Alu 1 305 -7 1577 167 65 14 chr1 86500477 86500830 -156163523 + AluJo SINE Alu 1 368 0 2191 101 9 25 chr1 86501721 86502039 -156162314 - AluSp SINE Alu 0 313 1 1711 189 34 0 chr1 86502529 86502825 -156161528 + AluJb SINE Alu 1 306 -6 1927 150 7 7 chr1 86502889 86503189 -156161164 + AluJo SINE Alu 1 300 -12 1381 233 93 28 chr1 86503259 86503320 -156161033 + L1ME3A LINE L1 5427 5483 -687 207 0 0 0 chr1 86503320 86503343 -156161010 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1381 233 93 28 chr1 86503343 86503774 -156160579 + L1ME3A LINE L1 5483 5951 -219 2041 135 0 0 chr1 86503814 86504122 -156160231 + AluSx SINE Alu 1 308 0 313 138 0 46 chr1 86504130 86504236 -156160117 + AluS SINE Alu 222 324 0 257 310 101 8 chr1 86504284 86504413 -156159940 + L1ME3A LINE L1 5999 6139 -31 794 293 8 24 chr1 86504924 86505177 -156159176 - MIR SINE MIR 0 262 14 809 158 216 4 chr1 86505187 86505442 -156158911 + Charlie5 DNA MER1_type 7 2624 0 249 286 86 35 chr1 86505812 86505999 -156158354 + MIR SINE MIR 1 247 -15 593 244 69 0 chr1 86506201 86506332 -156158021 + MIR SINE MIR 2 141 -121 2242 129 0 0 chr1 86506585 86506896 -156157457 - AluSx SINE Alu -1 311 1 26 50 0 0 chr1 86507120 86507160 -156157193 + AT_rich Low_complexity Low_complexity 1 40 0 1857 166 3 10 chr1 86508086 86508387 -156155966 + AluJo SINE Alu 1 299 -13 364 294 14 115 chr1 86508810 86509028 -156155325 + MER91A DNA MER1_type 1 196 0 2205 95 7 0 chr1 86509884 86510168 -156154185 + AluSx SINE Alu 15 300 -12 1499 235 41 9 chr1 86510171 86510516 -156153837 - MLT1F LTR MaLR -181 361 6 2280 115 0 3 chr1 86510974 86511286 -156153067 - AluSq SINE Alu -2 311 1 238 50 50 0 chr1 86512031 86512071 -156152282 + (TTG)n Simple_repeat Simple_repeat 3 44 0 1127 124 0 0 chr1 86512255 86512408 -156151945 - AluSx SINE Alu -159 153 1 491 232 145 63 chr1 86512786 86512911 -156151442 + MIR SINE MIR 4 154 -108 2112 129 0 7 chr1 86512911 86513213 -156151140 - AluSx SINE Alu -11 301 2 491 232 145 63 chr1 86513213 86513294 -156151059 + MIR SINE MIR 154 227 -35 565 252 0 0 chr1 86513375 86513518 -156150835 + L1M4 LINE L1 74 216 -6326 495 165 54 2 chr1 86513670 86513914 -156150439 + AluJb SINE Alu 1 307 -5 6772 164 14 11 chr1 86514120 86516492 -156147861 - L1PB1 LINE L1 -3 6864 4492 469 315 75 66 chr1 86516603 86517029 -156147324 - L1M2 LINE L1 -5972 877 448 250 167 0 0 chr1 86517628 86517670 -156146683 - FRAM/FAM SINE Alu -78 88 47 35 41 0 0 chr1 86517986 86518035 -156146318 + AT_rich Low_complexity Low_complexity 1 49 0 2234 231 12 0 chr1 86519013 86519659 -156144694 - L1PB1 LINE L1 -2729 4133 3480 306 176 37 56 chr1 86519658 86519749 -156144604 - L1PB1 LINE L1 -4004 2859 2769 * 198 0 0 0 chr1 86519749 86519771 -156144582 + (TATTG)n Simple_repeat Simple_repeat 2 23 0 306 176 37 56 chr1 86519771 86519787 -156144566 - L1PB1 LINE L1 -4094 2769 2754 705 96 0 88 chr1 86519787 86519912 -156144441 - AluSq/x SINE Alu -199 114 1 1035 122 20 0 chr1 86519927 86520075 -156144278 + FRAM SINE Alu 1 146 -30 2042 121 21 0 chr1 86520466 86520755 -156143598 + AluSx SINE Alu 1 295 -17 1629 197 48 3 chr1 86521014 86521304 -156143049 - AluJb SINE Alu -9 303 1 2509 66 0 3 chr1 86522467 86522772 -156141581 - AluY SINE Alu -7 304 1 186 103 0 0 chr1 86522938 86522967 -156141386 + (T)n Simple_repeat Simple_repeat 1 29 0 2194 105 26 0 chr1 86522997 86523301 -156141052 - AluSx SINE Alu 0 312 1 1226 132 19 19 chr1 86523627 86523839 -156140514 - MER7A DNA MER2_type -124 222 13 251 281 7 93 chr1 86523856 86523995 -156140358 - L2 LINE L2 -976 2338 2212 1834 153 7 23 chr1 86524626 86524934 -156139419 - AluJb SINE Alu -2 310 8 571 228 107 28 chr1 86525055 86525289 -156139064 - MLT1D LTR MaLR -30 437 177 1265 117 21 5 chr1 86525307 86525495 -156138858 - AluSg/x SINE Alu -22 290 100 895 148 0 7 chr1 86527568 86527703 -156136650 + AluJo SINE Alu 1 134 -178 1858 105 97 0 chr1 86527723 86528019 -156136334 + AluSx SINE Alu 1 321 0 2218 108 0 3 chr1 86528523 86528818 -156135535 - AluSx SINE Alu -18 294 1 266 316 8 34 chr1 86530051 86530168 -156134185 + MIR SINE MIR 102 215 -47 188 196 0 18 chr1 86530943 86530999 -156133354 + CT-rich Low_complexity Low_complexity 1 55 0 444 189 290 0 chr1 86531103 86531266 -156133087 + L1MC4 LINE L1 6448 6660 -1377 2170 119 0 0 chr1 86531266 86531552 -156132801 + AluSx SINE Alu 3 288 -24 2154 122 0 0 chr1 86531570 86531858 -156132495 + AluSx SINE Alu 1 288 -24 1249 108 12 0 chr1 86531876 86532042 -156132311 + AluSg SINE Alu 1 168 -142 2105 108 0 0 chr1 86532090 86532367 -156131986 + AluSx SINE Alu 27 303 -9 330 339 38 31 chr1 86532446 86532735 -156131618 + L2 LINE L2 2384 2674 -640 2281 81 23 29 chr1 86533484 86533793 -156130560 + AluSq SINE Alu 1 307 -6 2191 121 0 0 chr1 86533799 86534089 -156130264 + AluSq SINE Alu 1 290 -23 1851 183 0 10 chr1 86534714 86535020 -156129333 + AluJb SINE Alu 1 303 -9 30 27 0 0 chr1 86535175 86535212 -156129141 + AT_rich Low_complexity Low_complexity 1 37 0 2133 99 0 14 chr1 86535310 86535620 -156128733 - AluSc SINE Alu 0 306 1 2172 105 20 0 chr1 86536091 86536385 -156127968 - AluSx SINE Alu -12 300 1 1028 194 86 13 chr1 86536583 86536733 -156127620 + MIR SINE MIR 12 186 -76 1886 143 3 13 chr1 86536733 86537033 -156127320 - AluJo SINE Alu -15 297 1 1028 194 86 13 chr1 86537033 86537114 -156127239 + MIR SINE MIR 186 260 -2 193 235 221 0 chr1 86537201 86537269 -156127084 + MER5A DNA MER1_type 1 83 -106 331 269 134 51 chr1 86537357 86537573 -156126780 + MIR SINE MIR 28 261 -1 2147 138 0 0 chr1 86537636 86537932 -156126421 - AluSx SINE Alu -16 296 1 275 297 35 48 chr1 86538176 86538321 -156126032 + MIR SINE MIR 59 201 -61 6335 69 16 52 chr1 86538338 86539328 -156125025 - SVA Other Other 0 1386 433 4729 74 16 136 chr1 86539345 86540479 -156123874 - SVA Other Other -520 866 1 2378 95 0 0 chr1 86540558 86540863 -156123490 + AluSx SINE Alu 1 305 -7 1921 160 0 7 chr1 86541314 86541608 -156122745 - AluJb SINE Alu -20 292 1 1748 180 3 3 chr1 86541657 86541957 -156122396 + AluJb SINE Alu 1 300 -12 383 266 115 0 chr1 86542117 86542230 -156122123 + FLAM_A SINE Alu 1 126 -7 29 47 0 0 chr1 86543703 86543746 -156120607 + AT_rich Low_complexity Low_complexity 1 43 0 398 332 0 61 chr1 86543913 86544109 -156120244 - MIR SINE MIR -57 205 22 670 145 46 30 chr1 86545005 86545136 -156119217 + AluJ SINE Alu 9 141 -171 38 0 0 20 chr1 86545156 86545188 -156119165 + AT_rich Low_complexity Low_complexity 1 33 -15 2252 96 3 0 chr1 86545188 86545480 -156118873 + AluSq SINE Alu 1 293 -20 38 0 0 20 chr1 86545480 86545496 -156118857 + AT_rich Low_complexity Low_complexity 33 48 0 1003 170 13 0 chr1 86545496 86545649 -156118704 + AluJ SINE Alu 132 286 -26 487 115 10 62 chr1 86546345 86546441 -156117912 - FRAM SINE Alu -14 162 72 2561 73 0 0 chr1 86547449 86547762 -156116591 + AluSq SINE Alu 1 313 0 305 222 222 44 chr1 86548312 86548447 -156115906 - MER44D DNA MER2_type -180 429 1 23 55 0 18 chr1 86548595 86548628 -156115725 + AT_rich Low_complexity Low_complexity 1 34 -20 2133 116 0 0 chr1 86548628 86548913 -156115440 + AluSx SINE Alu 1 285 -27 23 55 0 18 chr1 86548913 86548934 -156115419 + AT_rich Low_complexity Low_complexity 34 54 0 486 233 108 0 chr1 86549145 86549265 -156115088 - FLAM_A SINE Alu 0 133 1 2106 107 0 58 chr1 86549383 86549711 -156114642 - AluSg SINE Alu -1 309 1 2081 114 20 7 chr1 86550149 86550447 -156113906 - AluSx SINE Alu -10 302 1 226 243 40 14 chr1 86550859 86550933 -156113420 - L1MC5 LINE L1 -48 7913 7838 1738 156 45 0 chr1 86551113 86551401 -156112952 - AluSx SINE Alu -1 311 11 846 214 71 7 chr1 86551558 86551792 -156112561 - MER33 DNA MER1_type 0 324 1 27 0 0 0 chr1 86552430 86552457 -156111896 + AT_rich Low_complexity Low_complexity 1 27 0 37 52 0 0 chr1 86553809 86553867 -156110486 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr1 86554554 86554575 -156109778 + AT_rich Low_complexity Low_complexity 1 21 0 322 173 0 0 chr1 86554998 86555050 -156109303 - MER105 DNA DNA -3 201 150 666 274 98 53 chr1 86555054 86555412 -156108941 + L2 LINE L2 1132 1505 -1809 1719 104 119 7 chr1 86555503 86555772 -156108581 - AluSg1 SINE Alu -10 299 1 406 266 133 12 chr1 86555775 86555948 -156108405 + L2 LINE L2 3118 3311 -2 282 246 50 131 chr1 86559164 86559363 -156104990 + MER5A DNA MER1_type 1 183 -6 931 226 71 17 chr1 86559849 86560088 -156104265 + MIR SINE MIR 2 253 -9 207 42 0 83 chr1 86560789 86560837 -156103516 + (TTTAA)n Simple_repeat Simple_repeat 4 47 0 1011 205 136 19 chr1 86561728 86561986 -156102367 + AluJo SINE Alu 1 288 -14 21 0 0 0 chr1 86562007 86562028 -156102325 + AT_rich Low_complexity Low_complexity 1 21 0 398 362 16 8 chr1 86563123 86563250 -156101103 + MIR SINE MIR 12 139 -123 1590 144 107 7 chr1 86563458 86563729 -156100624 + AluSx SINE Alu 1 298 -14 394 280 45 34 chr1 86564542 86564694 -156099659 + MIR3 SINE MIR 5 157 -78 316 240 132 25 chr1 86565111 86565232 -156099121 - L1MC4 LINE L1 0 8042 7909 1685 217 143 25 chr1 86565412 86565970 -156098383 - L1MC4 LINE L1 -952 7090 6467 363 274 0 0 chr1 86567269 86567353 -156097000 + MER94 DNA DNA 2 85 -49 615 212 0 0 chr1 86567424 86567537 -156096816 + FLAM_A SINE Alu 1 113 -29 22 0 0 0 chr1 86567838 86567860 -156096493 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr1 86567929 86567965 -156096388 + AT_rich Low_complexity Low_complexity 1 36 0 2077 123 7 3 chr1 86568040 86568341 -156096012 - AluSx SINE Alu -10 302 1 2023 114 36 0 chr1 86568412 86568693 -156095660 - AluSq SINE Alu -22 291 1 211 268 0 70 chr1 86568993 86569064 -156095289 - MIR3 SINE MIR -133 75 10 760 137 0 8 chr1 86569278 86569424 -156094929 - AluSg/x SINE Alu 0 314 170 23 33 0 0 chr1 86569843 86569873 -156094480 + AT_rich Low_complexity Low_complexity 1 30 0 330 137 0 96 chr1 86569924 86569997 -156094356 + AluJ/FRAM SINE Alu 226 291 -11 259 141 0 94 chr1 86570998 86571062 -156093291 - L1MC4 LINE L1 -123 7919 7862 1824 132 17 14 chr1 86571088 86571375 -156092978 + AluJb SINE Alu 3 290 -22 298 331 19 13 chr1 86571381 86571538 -156092815 - L1MC4 LINE L1 -285 7757 7600 23 33 0 0 chr1 86575207 86575237 -156089116 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 86576676 86576699 -156087654 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 86577937 86577959 -156086394 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 86580724 86580745 -156083608 + AT_rich Low_complexity Low_complexity 1 21 0 1796 119 0 14 chr1 86581475 86581752 -156082601 - AluSx SINE Alu -39 273 1 392 291 114 59 chr1 86582796 86583040 -156081313 + L2 LINE L2 3028 3290 -23 2285 103 3 3 chr1 86583040 86583352 -156081001 - AluSx SINE Alu 0 312 1 392 291 114 59 chr1 86583352 86583378 -156080975 + L2 LINE L2 3290 3313 0 1708 164 22 0 chr1 86583455 86583729 -156080624 - AluJb SINE Alu -30 282 3 859 121 8 0 chr1 86584329 86584453 -156079900 - AluJb SINE Alu -187 125 1 681 170 36 0 chr1 86584969 86585081 -156079272 - FLAM_A SINE Alu -20 122 7 1879 111 96 0 chr1 86585420 86585690 -156078663 + AluSx SINE Alu 1 296 -16 250 248 168 20 chr1 86585692 86585793 -156078560 + MIR SINE MIR 25 140 -68 259 263 70 0 chr1 86585912 86585969 -156078384 - MER45C DNA AcHobo -460 493 433 560 241 108 35 chr1 86586111 86586314 -156078039 - MER45C DNA AcHobo -642 311 94 1131 188 12 55 chr1 86586315 86586449 -156077904 + AluJb SINE Alu 1 120 -192 2249 108 0 7 chr1 86586449 86586755 -156077598 + AluSx SINE Alu 1 304 -8 1131 188 12 55 chr1 86586755 86586875 -156077478 + AluJb SINE Alu 120 244 -68 474 231 48 0 chr1 86586878 86586982 -156077371 - MER45C DNA AcHobo -844 109 1 21 0 0 0 chr1 86587485 86587506 -156076847 + AT_rich Low_complexity Low_complexity 1 21 0 2192 90 7 0 chr1 86587597 86587876 -156076477 - AluSp SINE Alu -24 289 9 2080 128 3 0 chr1 86588322 86588634 -156075719 + AluSq SINE Alu 1 313 0 3049 214 52 30 chr1 86588906 86589655 -156074698 + L1M4 LINE L1 3502 4272 -1874 2307 96 7 0 chr1 86589655 86589958 -156074395 + AluSg SINE Alu 1 305 -5 3049 214 52 30 chr1 86589958 86590008 -156074345 + L1M4 LINE L1 4272 4319 -1827 2104 88 0 4 chr1 86590212 86590486 -156073867 - AluSx SINE Alu -39 273 1 263 342 109 16 chr1 86591360 86591553 -156072800 + L2 LINE L2 2825 3035 -237 384 19 38 0 chr1 86591669 86591722 -156072631 - AluSc SINE Alu -2 297 243 1578 59 0 0 chr1 86591722 86591908 -156072445 - AluSc SINE Alu -123 186 1 392 291 114 59 chr1 86592314 86592558 -156071795 + L2 LINE L2 3028 3290 -23 2313 99 3 3 chr1 86592558 86592870 -156071483 - AluSx SINE Alu 0 312 1 392 291 114 59 chr1 86592870 86592896 -156071457 + L2 LINE L2 3290 3313 0 1731 161 22 0 chr1 86592973 86593247 -156071106 - AluJb SINE Alu -30 282 3 866 121 8 0 chr1 86593847 86593971 -156070382 - AluJb SINE Alu -187 125 1 690 170 36 0 chr1 86594487 86594599 -156069754 - FLAM_A SINE Alu -20 122 7 259 232 152 71 chr1 86594927 86594939 -156069414 + MIR SINE MIR 20 30 -178 1902 114 95 0 chr1 86594939 86595212 -156069141 + AluSx SINE Alu 1 299 -13 259 232 152 71 chr1 86595212 86595311 -156069042 + MIR SINE MIR 30 140 -68 259 329 53 0 chr1 86595411 86595487 -156068866 - MER45C DNA AcHobo -441 512 433 490 241 108 35 chr1 86595628 86595831 -156068522 - MER45C DNA AcHobo -642 311 94 1189 194 12 28 chr1 86595832 86595966 -156068387 + AluJb SINE Alu 1 131 -181 2401 88 0 10 chr1 86595966 86596272 -156068081 + AluSx SINE Alu 1 303 -9 1189 194 12 28 chr1 86596272 86596385 -156067968 + AluJb SINE Alu 131 244 -68 436 231 48 0 chr1 86596388 86596492 -156067861 - MER45C DNA AcHobo -844 109 1 21 0 0 0 chr1 86596996 86597017 -156067336 + AT_rich Low_complexity Low_complexity 1 21 0 2411 78 16 0 chr1 86597086 86597393 -156066960 - AluSp SINE Alu -1 312 1 236 306 135 0 chr1 86597532 86597643 -156066710 + L3b LINE CR1 1271 1396 -187 669 159 94 7 chr1 86597887 86598025 -156066328 - MIR SINE MIR -61 201 52 2311 89 7 0 chr1 86598051 86598342 -156066011 + AluSg SINE Alu 1 293 -17 2435 39 3 80 chr1 86598835 86599171 -156065182 - AluY SINE Alu -1 310 1 369 349 116 56 chr1 86599580 86600030 -156064323 - L2 LINE L2 -407 2907 2431 225 217 133 24 chr1 86600089 86600172 -156064181 - L2 LINE L2 -1262 2052 1961 299 229 0 57 chr1 86600360 86600465 -156063888 + GA-rich Low_complexity Low_complexity 2 100 0 253 298 0 24 chr1 86600800 86600884 -156063469 + CT-rich Low_complexity Low_complexity 1 82 0 1346 136 32 27 chr1 86601242 86601462 -156062891 + AluJo SINE Alu 9 229 -83 21 82 0 0 chr1 86601702 86601751 -156062602 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr1 86601851 86601877 -156062476 + AT_rich Low_complexity Low_complexity 1 26 0 1820 154 7 10 chr1 86601953 86602251 -156062102 - AluJb SINE Alu -14 298 2 202 351 0 13 chr1 86602336 86602413 -156061940 - MIR SINE MIR 0 262 187 566 217 30 114 chr1 86602475 86602641 -156061712 - MIR SINE MIR -97 165 14 390 154 0 0 chr1 86602644 86602722 -156061631 + (CA)n Simple_repeat Simple_repeat 2 79 0 22 70 0 0 chr1 86602903 86602946 -156061407 + AT_rich Low_complexity Low_complexity 1 43 0 1503 128 206 0 chr1 86602994 86603237 -156061116 - AluSx SINE Alu -19 293 1 41 21 0 0 chr1 86604384 86604432 -156059921 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 86604938 86604960 -156059393 + AT_rich Low_complexity Low_complexity 1 22 0 2210 138 0 0 chr1 86605318 86605630 -156058723 + AluJb SINE Alu 1 312 0 2085 134 0 3 chr1 86605902 86606201 -156058152 - AluSx SINE Alu -14 298 1 630 138 107 75 chr1 86606385 86606544 -156057809 - AluJo SINE Alu -63 249 86 1017 137 24 18 chr1 86607045 86607213 -156057140 - FRAM SINE Alu -8 168 1 184 308 143 22 chr1 86607230 86607321 -156057032 - L3 LINE CR1 -1 1576 1475 2205 92 20 14 chr1 86607491 86607786 -156056567 + AluSx SINE Alu 1 297 -15 2125 101 3 54 chr1 86607788 86608105 -156056248 + AluSq SINE Alu 1 301 -12 690 126 5 9 chr1 86608105 86608241 -156056112 + THE1A-int LTR MaLR 1275 1476 -175 2450 97 6 22 chr1 86608364 86608725 -156055628 + THE1A LTR MaLR 1 355 0 1787 156 48 3 chr1 86609001 86609290 -156055063 - AluJb SINE Alu -8 304 3 23 0 0 0 chr1 86611143 86611166 -156053187 + AT_rich Low_complexity Low_complexity 1 23 0 44 46 0 0 chr1 86611639 86611704 -156052649 + AT_rich Low_complexity Low_complexity 1 65 0 248 260 73 0 chr1 86611882 86612005 -156052348 - L1MEc LINE L1 -3449 2766 2635 2325 68 3 7 chr1 86612019 86612345 -156052008 - AluY SINE Alu 0 311 1 1682 197 3 16 chr1 86612351 86612661 -156051692 - AluJo SINE Alu -6 306 1 589 232 15 83 chr1 86612662 86612815 -156051538 - L1MEc LINE L1 -3819 2396 2315 2483 66 7 0 chr1 86612815 86613116 -156051237 - AluSq SINE Alu -10 303 1 589 232 15 83 chr1 86613116 86613289 -156051064 - L1MEc LINE L1 -3900 2315 2132 * 5000 174 38 49 chr1 86613262 86614266 -156050087 - L1MC1 LINE L1 -11 6391 5377 2298 98 0 0 chr1 86614266 86614561 -156049792 - AluSx SINE Alu -17 295 1 5000 174 38 49 chr1 86614561 86615541 -156048812 - L1MC1 LINE L1 -1025 5377 4388 2001 102 46 75 chr1 86615541 86615598 -156048755 - MER46B DNA MER2_type -2495 236 179 2415 75 7 0 chr1 86615598 86615892 -156048461 - AluSg SINE Alu -14 296 1 2001 102 46 75 chr1 86615892 86615922 -156048431 - MER46B DNA MER2_type -2552 179 150 237 65 0 0 chr1 86615922 86615953 -156048400 + (TA)n Simple_repeat Simple_repeat 2 32 0 2001 102 46 75 chr1 86615953 86616087 -156048266 - MER46B DNA MER2_type -2581 150 151 2346 101 0 0 chr1 86616087 86616385 -156047968 - AluSq SINE Alu -15 298 1 2001 102 46 75 chr1 86616385 86616533 -156047820 - MER46B DNA MER2_type -2579 152 1 5000 174 38 49 chr1 86616533 86616554 -156047799 - L1MC1 LINE L1 -2014 4388 4368 1667 191 3 29 chr1 86616554 86616868 -156047485 + AluJo SINE Alu 1 306 -6 5000 174 38 49 chr1 86616868 86616924 -156047429 - L1MC1 LINE L1 -2034 4368 4339 2101 103 11 0 chr1 86616924 86617205 -156047148 - AluSg SINE Alu -7 303 20 780 243 80 13 chr1 86617320 86617620 -156046733 - L1MC1 LINE L1 -2325 3890 3571 2101 128 3 0 chr1 86617891 86618203 -156046150 - AluSq SINE Alu 0 313 1 2410 81 3 0 chr1 86618650 86618947 -156045406 + AluSp SINE Alu 9 306 -7 1824 151 18 7 chr1 86618971 86619256 -156045097 + AluJo SINE Alu 5 292 -20 823 100 0 17 chr1 86619256 86619376 -156044977 - AluJo/FLAM SINE Alu -184 118 1 24 67 0 0 chr1 86619638 86619683 -156044670 + AT_rich Low_complexity Low_complexity 1 45 0 386 289 19 0 chr1 86620266 86620370 -156043983 - MIR SINE MIR -10 252 147 1679 159 36 13 chr1 86620394 86620695 -156043658 + AluJo SINE Alu 1 308 -4 31 26 0 0 chr1 86620776 86620814 -156043539 + AT_rich Low_complexity Low_complexity 1 38 0 387 277 44 22 chr1 86620938 86621075 -156043278 + MIR SINE MIR 14 153 -109 439 330 71 7 chr1 86621087 86621381 -156042972 + L2 LINE L2 1909 2221 -1093 * 475 284 124 73 chr1 86621370 86621740 -156042613 + L2 LINE L2 2824 3212 -60 1228 147 21 5 chr1 86621741 86621932 -156042421 - AluJo SINE Alu -118 194 1 2209 97 10 3 chr1 86622071 86622359 -156041994 - AluSc SINE Alu -19 290 1 431 255 28 9 chr1 86622360 86622466 -156041887 - L2 LINE L2 -13 3300 3193 23 0 0 0 chr1 86622755 86622778 -156041575 + AT_rich Low_complexity Low_complexity 1 23 0 255 227 23 34 chr1 86622949 86623037 -156041316 + L1MA10 LINE L1 6247 6333 -1 2098 147 0 0 chr1 86623049 86623355 -156040998 + AluSx SINE Alu 3 308 -4 1336 154 14 5 chr1 86623407 86623615 -156040738 - AluJb SINE Alu -20 292 83 332 211 33 0 chr1 86624626 86624716 -156039637 - L1MC5 LINE L1 -36 7925 7833 231 288 82 48 chr1 86625216 86625362 -156038991 - L2 LINE L2 -9 3304 3154 555 209 0 26 chr1 86625446 86625561 -156038792 + FLAM_A SINE Alu 13 124 -18 866 189 166 16 chr1 86625861 86626168 -156038185 - Charlie1 DNA MER1_type -66 2695 2343 300 275 29 0 chr1 86626166 86626235 -156038118 - Charlie1 DNA MER1_type -2690 71 1 * 236 362 50 84 chr1 86626819 86627142 -156037211 - L2 LINE L2 -26 3246 2935 480 254 18 0 chr1 86627531 86627641 -156036712 - L2 LINE L2 -2 3311 3200 217 132 0 0 chr1 86627641 86627679 -156036674 + (T)n Simple_repeat Simple_repeat 1 38 0 16674 31 3 18 chr1 86627680 86630586 -156033767 - L1PA4 LINE L1 -3 6152 3273 2026 123 23 16 chr1 86630586 86630894 -156033459 - AluSg SINE Alu 0 310 1 349 264 104 9 chr1 86631048 86631154 -156033199 - L2 LINE L2 -849 2465 2350 1928 144 18 0 chr1 86631180 86631498 -156032855 - AluSx SINE Alu 0 323 1 2053 121 0 14 chr1 86631517 86631814 -156032539 - AluSx SINE Alu -19 293 1 2521 80 0 3 chr1 86632051 86632363 -156031990 + AluY SINE Alu 1 311 0 2124 120 3 3 chr1 86632382 86632683 -156031670 + AluSx SINE Alu 1 301 -11 1484 150 142 0 chr1 86632693 86632946 -156031407 + AluJb SINE Alu 1 289 -13 1144 68 0 0 chr1 86633142 86633274 -156031079 + AluSq/x SINE Alu 2 133 -180 1992 138 24 0 chr1 86633274 86633572 -156030781 + AluSg SINE Alu 1 305 -5 279 358 49 41 chr1 86633677 86633800 -156030553 + L2 LINE L2 3147 3270 -2 21 0 0 0 chr1 86633899 86633920 -156030433 + AT_rich Low_complexity Low_complexity 1 21 0 2096 148 0 0 chr1 86634231 86634529 -156029824 + AluJo SINE Alu 1 298 -14 221 71 71 0 chr1 86634873 86634915 -156029438 + (TAATG)n Simple_repeat Simple_repeat 2 46 0 375 240 10 128 chr1 86634968 86635059 -156029294 - Charlie8 DNA MER1_type -2156 261 204 815 71 8 39 chr1 86635059 86635186 -156029167 + L1PB3 LINE L1 6030 6152 -2 375 240 10 128 chr1 86635186 86635290 -156029063 - Charlie8 DNA MER1_type -2213 204 89 1955 151 0 17 chr1 86635309 86635608 -156028745 - AluJb SINE Alu -18 294 1 243 114 0 0 chr1 86635619 86635663 -156028690 + (T)n Simple_repeat Simple_repeat 1 44 0 239 188 0 0 chr1 86636057 86636105 -156028248 + L1ME4a LINE L1 5957 6004 -117 210 71 0 0 chr1 86638778 86638806 -156025547 + (CCG)n Simple_repeat Simple_repeat 1 28 0 781 90 8 30 chr1 86639398 86639532 -156024821 + (GGAGAA)n Simple_repeat Simple_repeat 5 135 0 2043 134 0 10 chr1 86639885 86640184 -156024169 + AluSx SINE Alu 1 296 -16 2057 93 0 24 chr1 86640184 86640474 -156023879 + AluSq SINE Alu 1 283 -30 416 335 30 5 chr1 86640702 86640902 -156023451 + L2 LINE L2 2856 3060 -212 406 103 0 0 chr1 86641071 86641129 -156023224 - Alu SINE Alu -260 58 1 2259 125 0 7 chr1 86641186 86641491 -156022862 + AluSx SINE Alu 1 303 -9 1449 253 104 70 chr1 86641631 86642106 -156022247 - L2 LINE L2 0 3313 2855 2195 119 0 0 chr1 86642106 86642400 -156021953 - AluSx SINE Alu -18 294 1 1449 253 104 70 chr1 86642400 86642420 -156021933 - L2 LINE L2 -458 2855 2837 1646 158 8 4 chr1 86642420 86642679 -156021674 - AluJo SINE Alu -52 260 1 1449 253 104 70 chr1 86642679 86643157 -156021196 - L2 LINE L2 -476 2837 2311 21 86 0 12 chr1 86643254 86643274 -156021079 + AT_rich Low_complexity Low_complexity 1 20 -60 1780 104 8 0 chr1 86643274 86643515 -156020838 + AluSx SINE Alu 1 243 -69 21 86 0 12 chr1 86643515 86643575 -156020778 + AT_rich Low_complexity Low_complexity 20 80 0 1876 110 3 28 chr1 86643796 86644086 -156020267 + MER1B DNA MER1_type 57 339 0 1743 159 33 13 chr1 86644222 86644524 -156019829 + AluJo SINE Alu 3 310 -2 1477 191 129 106 chr1 86644572 86644782 -156019571 + MLT1F LTR MaLR 3 207 -335 771 156 7 52 chr1 86644782 86644917 -156019436 - FLAM_C SINE Alu 0 133 5 1477 191 129 106 chr1 86644917 86645224 -156019129 + MLT1F LTR MaLR 207 532 -10 2104 120 3 7 chr1 86645311 86645619 -156018734 - AluSx SINE Alu -5 307 1 28 86 0 0 chr1 86646495 86646565 -156017788 + AT_rich Low_complexity Low_complexity 1 70 0 2223 117 0 0 chr1 86646682 86646981 -156017372 - AluSx SINE Alu -13 299 1 25 49 0 33 chr1 86647187 86647202 -156017151 + AT_rich Low_complexity Low_complexity 1 15 -44 2519 78 0 0 chr1 86647202 86647509 -156016844 - AluSq SINE Alu -6 307 1 25 49 0 33 chr1 86647509 86647554 -156016799 + AT_rich Low_complexity Low_complexity 15 59 0 2549 75 0 0 chr1 86648817 86649125 -156015228 - AluSq SINE Alu -5 308 1 186 133 0 0 chr1 86649873 86649903 -156014450 + (CCA)n Simple_repeat Simple_repeat 1 30 0 2136 92 13 7 chr1 86650821 86651126 -156013227 - AluY SINE Alu -4 307 1 315 0 0 0 chr1 86651284 86651319 -156013034 + (TG)n Simple_repeat Simple_repeat 2 36 0 365 260 20 7 chr1 86701786 86701923 -155962430 + L1ME1 LINE L1 6021 6163 -1 1446 104 0 0 chr1 86702909 86703092 -155961261 - AluSg SINE Alu -127 183 1 23 0 0 0 chr1 86703475 86703498 -155960855 + AT_rich Low_complexity Low_complexity 1 23 0 2314 106 3 0 chr1 86704651 86704952 -155959401 - AluSq SINE Alu -11 302 1 51 94 0 0 chr1 86705013 86705162 -155959191 + AT_rich Low_complexity Low_complexity 1 149 0 2252 116 0 3 chr1 86705319 86705630 -155958723 - AluSg SINE Alu 0 310 1 321 146 0 0 chr1 86705696 86705744 -155958609 + Alu SINE Alu 1 48 -254 1874 70 4 8 chr1 86705845 86706086 -155958267 + AluSp SINE Alu 65 304 -9 187 286 18 0 chr1 86706984 86707040 -155957313 - MIR SINE MIR -76 186 130 28 79 0 0 chr1 86707270 86707333 -155957020 + AT_rich Low_complexity Low_complexity 1 63 0 2095 99 49 0 chr1 86707378 86707662 -155956691 - AluSx SINE Alu -14 298 1 2088 127 0 7 chr1 86707864 86708155 -155956198 - AluSx SINE Alu -23 289 1 310 326 90 68 chr1 86708187 86708497 -155955856 + L2 LINE L2 2944 3260 -12 214 83 0 62 chr1 86708671 86708719 -155955634 + (TTTTC)n Simple_repeat Simple_repeat 2 46 0 2364 100 10 0 chr1 86708754 86709103 -155955250 - AluSp SINE Alu 0 352 1 31 26 0 0 chr1 86710535 86710573 -155953780 + AT_rich Low_complexity Low_complexity 1 38 0 2846 139 62 22 chr1 86710752 86711299 -155953054 - L1MB7 LINE L1 -15 6169 5601 1950 145 7 16 chr1 86711991 86712294 -155952059 + AluJb SINE Alu 1 300 -12 237 143 0 95 chr1 86712318 86712381 -155951972 + Charlie8 DNA MER1_type 37 93 -2324 267 316 158 18 chr1 86712951 86713065 -155951288 - MIR3 SINE MIR -3 205 76 2095 110 7 17 chr1 86713125 86713417 -155950936 + AluSx SINE Alu 1 289 -23 787 174 0 38 chr1 86713531 86713663 -155950690 + FLAM_C SINE Alu 1 127 -6 282 254 28 0 chr1 86714010 86714081 -155950272 + GA-rich Low_complexity Low_complexity 4 76 0 3221 26 16 0 chr1 86714243 86714624 -155949729 - L1PA5 LINE L1 -6 6148 5762 1174 143 54 15 chr1 86714627 86714830 -155949523 - AluJb SINE Alu -16 296 86 1387 197 56 0 chr1 86714961 86715230 -155949123 + AluJo SINE Alu 1 284 -28 226 148 16 33 chr1 86715346 86715407 -155948946 + (TATAA)n Simple_repeat Simple_repeat 1 60 0 2196 90 0 3 chr1 86715426 86715755 -155948598 - AluY SINE Alu 0 328 1 2076 113 0 0 chr1 86715879 86716162 -155948191 + AluSx SINE Alu 15 297 -15 921 205 0 0 chr1 86717007 86717173 -155947180 - AluJo SINE Alu -11 301 136 32 0 0 0 chr1 86717364 86717396 -155946957 + AT_rich Low_complexity Low_complexity 1 32 0 1122 175 0 0 chr1 86717563 86717746 -155946607 - AluJo SINE Alu -18 294 112 558 181 0 0 chr1 86717746 86717840 -155946513 - AluJo SINE Alu -166 146 53 1684 199 3 0 chr1 86717865 86718151 -155946202 + AluJo SINE Alu 15 301 -11 370 158 12 0 chr1 86718377 86718459 -155945894 - L1MA8 LINE L1 0 6291 6209 2299 106 0 22 chr1 86718488 86718808 -155945545 + AluSp SINE Alu 1 313 0 317 321 37 27 chr1 86718928 86719085 -155945268 - MIR SINE MIR -58 150 16 202 348 157 0 chr1 86719616 86719705 -155944648 - L2 LINE L2 -12 3260 3158 549 161 0 0 chr1 86719711 86719798 -155944555 - AluSc SINE Alu -16 293 207 3220 149 49 5 chr1 86719821 86720391 -155943962 - L1PB4 LINE L1 0 6156 5562 627 280 128 60 chr1 86720424 86720792 -155943561 - L2 LINE L2 -2 3311 2919 839 111 8 0 chr1 86720922 86721039 -155943314 - AluSx SINE Alu -8 304 187 448 86 14 14 chr1 86721039 86721109 -155943244 - AluSx SINE Alu -161 151 82 973 182 91 0 chr1 86721115 86721324 -155943029 - L1PB4 LINE L1 -138 6018 5791 309 176 0 0 chr1 86721325 86721376 -155942977 - Alu SINE Alu -252 51 1 227 204 0 0 chr1 86721725 86721774 -155942579 + A-rich Low_complexity Low_complexity 1 49 0 30 0 0 0 chr1 86721912 86721942 -155942411 + AT_rich Low_complexity Low_complexity 1 30 0 1843 161 3 7 chr1 86721971 86722263 -155942090 + AluJo SINE Alu 1 291 -21 322 209 0 0 chr1 86722474 86722541 -155941812 + AluJ/FRAM SINE Alu 230 296 -6 673 202 8 8 chr1 86722634 86722758 -155941595 - FLAM_C SINE Alu -19 124 1 341 194 0 0 chr1 86723497 86723569 -155940784 + LTR30 LTR ERV1 549 620 -102 264 217 17 0 chr1 86723670 86723730 -155940623 + MER116 DNA Mariner 1 61 -19 302 297 40 11 chr1 86723773 86723948 -155940405 + MER112 DNA MER1_type 74 253 -7 21 0 0 0 chr1 86724516 86724537 -155939816 + AT_rich Low_complexity Low_complexity 1 21 0 1986 151 10 6 chr1 86724543 86724854 -155939499 + AluJb SINE Alu 1 312 0 21 71 0 0 chr1 86724859 86724901 -155939452 + AT_rich Low_complexity Low_complexity 1 42 0 1965 136 7 10 chr1 86724982 86725277 -155939076 + AluSx SINE Alu 1 294 -18 25 51 0 0 chr1 86725658 86725697 -155938656 + AT_rich Low_complexity Low_complexity 1 39 0 2241 100 3 0 chr1 86725699 86725990 -155938363 + AluSp SINE Alu 1 292 -21 307 196 0 0 chr1 86725993 86726049 -155938304 + L1MC4 LINE L1 6648 6703 -1339 366 23 0 0 chr1 86726055 86726098 -155938255 + (GA)n Simple_repeat Simple_repeat 2 44 0 683 150 0 9 chr1 86726098 86726211 -155938142 - FLAM_C SINE Alu -31 112 1 258 250 132 20 chr1 86727301 86727453 -155936900 - MERVL LTR ERVL -1662 3823 3655 517 358 22 0 chr1 86727560 86727789 -155936564 - MERVL LTR ERVL -2338 3426 3193 201 378 97 22 chr1 86727925 86728005 -155936348 - L2 LINE L2 -466 2848 2775 519 229 222 0 chr1 86728005 86728158 -155936195 - MER5A DNA MER1_type 0 189 3 201 378 97 22 chr1 86728158 86728355 -155935998 - L2 LINE L2 -539 2775 2550 1180 162 0 50 chr1 86729928 86730150 -155934203 + AluJo SINE Alu 85 295 -17 21 36 0 0 chr1 86730206 86730234 -155934119 + AT_rich Low_complexity Low_complexity 1 28 0 2248 108 0 0 chr1 86731197 86731494 -155932859 + AluSg SINE Alu 5 301 -9 191 321 0 0 chr1 86731818 86731874 -155932479 + MIR SINE MIR 186 241 -21 641 259 41 99 chr1 86732982 86733276 -155931077 - MER115 DNA AcHobo -14 679 403 615 302 32 5 chr1 86733354 86733543 -155930810 - MER115 DNA AcHobo -439 254 61 2370 100 6 0 chr1 86733727 86734038 -155930315 + AluSq SINE Alu 1 313 0 232 273 13 13 chr1 86734096 86734173 -155930180 + LTR33 LTR ERVL 445 521 0 987 114 8 0 chr1 86734873 86735004 -155929349 + FLAM_C SINE Alu 1 132 -11 231 244 81 12 chr1 86735045 86735131 -155929222 + Charlie1 DNA MER1_type 85 176 -2585 567 223 133 0 chr1 86735135 86735301 -155929052 - MER63A DNA MER1_type -21 189 2 428 248 110 9 chr1 86735354 86735463 -155928890 - FLAM_A SINE Alu -13 120 1 186 43 0 0 chr1 86735475 86735498 -155928855 + (TG)n Simple_repeat Simple_repeat 2 24 0 1744 132 0 59 chr1 86735498 86735787 -155928566 - AluJb SINE Alu -40 272 1 1853 108 93 0 chr1 86735812 86736090 -155928263 - AluSg SINE Alu -6 304 1 290 175 53 0 chr1 86736093 86736150 -155928203 + Charlie1 DNA MER1_type 2701 2760 -1 26 0 0 0 chr1 86736197 86736223 -155928130 + AT_rich Low_complexity Low_complexity 1 26 0 2329 55 28 0 chr1 86737807 86738096 -155926257 - AluSx SINE Alu -15 297 1 192 306 140 59 chr1 86738891 86739162 -155925191 - L2 LINE L2 -1894 1420 1128 362 323 40 81 chr1 86739400 86739722 -155924631 - L1M2 LINE L1 -5765 1084 776 207 0 0 0 chr1 86739891 86739914 -155924439 + (CCGCG)n Simple_repeat Simple_repeat 4 26 0 448 297 108 5 chr1 86741127 86741322 -155923031 + MIR SINE MIR 47 261 -1 222 345 48 55 chr1 86741310 86741455 -155922898 - MIR SINE MIR -99 163 20 * 226 222 19 0 chr1 86741519 86741573 -155922780 + Tigger5 DNA MER2_type 1 55 -2268 501 167 0 0 chr1 86741628 86741718 -155922635 + Tigger5 DNA MER2_type 2234 2323 0 554 231 86 32 chr1 86741740 86741926 -155922427 - MIR SINE MIR -26 236 41 1478 172 18 33 chr1 86741935 86742208 -155922145 - AluJo SINE Alu -1 311 43 1901 109 65 17 chr1 86742676 86742969 -155921384 - AluSx SINE Alu -5 307 1 257 304 186 0 chr1 86743247 86743349 -155921004 - MIR SINE MIR -116 146 26 2249 109 3 7 chr1 86743415 86743719 -155920634 - AluSx SINE Alu -9 303 1 2406 82 0 3 chr1 86744151 86744455 -155919898 - AluY SINE Alu -8 303 1 2251 90 21 0 chr1 86745027 86745315 -155919038 - AluSx SINE Alu -17 295 2 350 164 129 43 chr1 86745351 86745467 -155918886 + L2 LINE L2 1669 1794 -1520 820 237 263 27 chr1 86745483 86745967 -155918386 + L2 LINE L2 2719 3313 0 477 105 105 0 chr1 86746137 86746232 -155918121 - L1MA9 LINE L1 -25 6287 6183 496 196 36 0 chr1 86746678 86746790 -155917563 + MER90 LTR ERV1 10 125 -450 899 199 125 12 chr1 86746797 86747053 -155917300 + MER90 LTR ERV1 330 614 0 1339 153 21 87 chr1 86747171 86747459 -155916894 + AluJo SINE Alu 26 294 -18 1275 183 108 42 chr1 86748544 86748877 -155915476 - MLT1A1 LTR MaLR -7 358 4 552 271 101 32 chr1 86749444 86749691 -155914662 + L2 LINE L2 2918 3181 -91 1984 117 17 7 chr1 86749716 86750014 -155914339 + AluJb SINE Alu 1 301 -11 231 228 101 13 chr1 86750016 86750095 -155914258 - L1MC5 LINE L1 -44 7917 7832 435 233 133 17 chr1 86750130 86750310 -155914043 - L1ME3A LINE L1 -5 6165 5965 542 217 65 14 chr1 86750386 86750603 -155913750 - L1MC5 LINE L1 -433 7528 7301 447 152 33 0 chr1 86750914 86751006 -155913347 - L1MA4A LINE L1 -7 6296 6202 509 217 42 8 chr1 86751245 86751365 -155912988 - L2 LINE L2 0 3313 3190 643 241 43 0 chr1 86751677 86751864 -155912489 + MIR SINE MIR 68 262 0 247 311 68 39 chr1 86751966 86752069 -155912284 - L2 LINE L2 -19 3253 3148 390 226 116 52 chr1 86752586 86752741 -155911612 - MER5A DNA MER1_type 0 189 25 1658 131 27 98 chr1 86752978 86753314 -155911039 + AluJb SINE Alu 1 312 0 1542 188 0 0 chr1 86753727 86753966 -155910387 - AluJo SINE Alu -73 239 1 258 32 0 0 chr1 86754346 86754377 -155909976 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1204 132 0 0 chr1 86755010 86755192 -155909161 - AluSg/x SINE Alu 0 310 129 1642 109 0 0 chr1 86755228 86755438 -155908915 - AluSx SINE Alu -102 210 1 1739 151 35 32 chr1 86756015 86756326 -155908027 - AluJb SINE Alu 0 312 1 249 304 96 17 chr1 86756415 86756530 -155907823 - MIR SINE MIR -65 143 20 482 220 8 8 chr1 86756539 86756657 -155907696 - MER20B DNA MER1_type -1 782 665 2198 111 26 7 chr1 86756739 86757046 -155907307 + AluSq SINE Alu 1 313 0 2340 98 3 25 chr1 86757124 86757440 -155906913 + AluSx SINE Alu 1 309 -3 1147 276 76 36 chr1 86757523 86757997 -155906356 - MER20B DNA MER1_type -271 512 20 1034 199 5 63 chr1 86758193 86758264 -155906089 - AluJo SINE Alu -23 289 215 2183 126 3 7 chr1 86758264 86758566 -155905787 - AluSx SINE Alu -11 301 1 1034 199 5 63 chr1 86758566 86758715 -155905638 - AluJo SINE Alu -97 215 82 5953 104 20 0 chr1 86758774 86760556 -155903797 + L1PA13 LINE L1 4330 6149 -14 321 198 180 18 chr1 86760796 86760907 -155903446 + MIR SINE MIR 124 252 -10 2061 146 0 3 chr1 86760962 86761271 -155903082 - AluSg SINE Alu -2 308 1 248 264 14 0 chr1 86762072 86762144 -155902209 + MER94 DNA DNA 28 100 -34 2266 107 13 0 chr1 86762996 86763294 -155901059 - AluSx SINE Alu -10 302 1 35 24 0 0 chr1 86764789 86764831 -155899522 + AT_rich Low_complexity Low_complexity 1 42 0 526 192 108 25 chr1 86765008 86765242 -155899111 - FLAM_A SINE Alu 0 246 3 375 306 36 2 chr1 86765302 86765419 -155898934 + MIR SINE MIR 37 154 -70 534 339 17 5 chr1 86765510 86765723 -155898630 + MIR SINE MIR 2 218 -44 2337 99 0 16 chr1 86766316 86766629 -155897724 - AluY SINE Alu -3 308 1 2202 123 0 0 chr1 86766629 86766922 -155897431 - AluSx SINE Alu -17 295 3 1164 194 46 34 chr1 86767739 86768002 -155896351 - AluJo SINE Alu -5 307 42 200 368 32 21 chr1 86768100 86768195 -155896158 - MIR SINE MIR -85 123 28 337 219 79 35 chr1 86768494 86768597 -155895756 - MLT1K LTR MaLR -2 586 479 812 273 84 20 chr1 86768597 86768695 -155895658 - MLT1L LTR MaLR 0 615 525 1793 187 3 0 chr1 86768695 86768984 -155895369 + AluJb SINE Alu 1 290 -22 812 273 84 20 chr1 86768984 86769291 -155895062 - MLT1L LTR MaLR -90 525 184 236 269 26 39 chr1 86769678 86769756 -155894597 - MLT1K LTR MaLR -451 137 61 2100 155 3 0 chr1 86769898 86770234 -155894119 - MER1B DNA MER1_type -2 337 1 2090 110 0 41 chr1 86770283 86770600 -155893753 - AluSx SINE Alu -8 304 1 1159 186 68 26 chr1 86770621 86770932 -155893421 + MER33 DNA MER1_type 1 324 0 2801 7 0 0 chr1 86771427 86771731 -155892622 + AluYa5 SINE Alu 1 304 -7 781 266 25 10 chr1 86773808 86774011 -155890342 + MIR SINE MIR 47 252 -10 1809 159 55 3 chr1 86774798 86775124 -155889229 - MER2 DNA MER2_type -1 343 1 226 253 220 0 chr1 86775265 86775356 -155888997 - MIR SINE MIR 0 262 152 791 236 124 8 chr1 86775396 86775638 -155888715 - L1ME3 LINE L1 -42 6120 5851 608 273 56 0 chr1 86775639 86775782 -155888571 - MIR SINE MIR -99 163 13 3347 234 99 13 chr1 86776342 86777515 -155886838 - L1MC4 LINE L1 -13 8029 6756 428 260 45 45 chr1 86777641 86777752 -155886601 - L1MC4a LINE L1 -1106 6702 6589 2239 118 10 0 chr1 86777752 86778049 -155886304 + AluSx SINE Alu 1 300 -12 428 260 45 45 chr1 86778049 86778114 -155886239 - L1MC4a LINE L1 -1218 6590 6526 11356 175 18 16 chr1 86778151 86780591 -155883762 - L1PA14 LINE L1 -1688 4458 2013 4658 127 28 23 chr1 86780590 86782122 -155882231 + L1PA14 LINE L1 4469 5993 -168 * 973 182 78 21 chr1 86782175 86782367 -155881986 + AluJo SINE Alu 95 297 -15 373 238 163 0 chr1 86782367 86782514 -155881839 - L1MC4a LINE L1 -1679 6129 5959 392 211 122 0 chr1 86782514 86782604 -155881749 - U6 snRNA snRNA -6 101 1 462 299 100 42 chr1 86782707 86782948 -155881405 + MIR SINE MIR 2 256 -6 542 205 82 8 chr1 86783044 86783166 -155881187 - AluJb SINE Alu -181 131 1 1327 220 34 0 chr1 86783317 86783612 -155880741 - MER58B DNA MER1_type 0 341 37 21 0 0 0 chr1 86783694 86783715 -155880638 + AT_rich Low_complexity Low_complexity 1 21 0 2225 104 0 0 chr1 86783727 86784015 -155880338 - AluSx SINE Alu -24 288 1 26 30 0 0 chr1 86784593 86784626 -155879727 + AT_rich Low_complexity Low_complexity 1 33 0 473 317 35 0 chr1 86784630 86784775 -155879578 + MIR SINE MIR 47 196 -66 311 320 90 0 chr1 86787808 86787908 -155876445 - L2 LINE L2 -43 3229 3121 354 260 146 16 chr1 86787930 86788053 -155876300 + MIR SINE MIR 94 232 -30 242 240 0 67 chr1 86788109 86788184 -155876169 - L2 LINE L2 -208 3064 2995 659 140 10 0 chr1 86788326 86788426 -155875927 - 5S rRNA rRNA -1 120 20 293 360 40 24 chr1 86792011 86792136 -155872217 - L2 LINE L2 -2 3270 3144 2152 143 29 8 chr1 86792138 86792515 -155871838 + MLT1B LTR MaLR 1 385 -5 521 322 85 69 chr1 86792730 86792948 -155871405 - L2 LINE L2 -18 3254 3041 2373 107 0 0 chr1 86792948 86793258 -155871095 - AluY SINE Alu -1 310 1 521 322 85 69 chr1 86793258 86793630 -155870723 - L2 LINE L2 -231 3041 2633 591 235 17 50 chr1 86793750 86793929 -155870424 - MER63A DNA MER1_type -37 173 1 252 317 124 52 chr1 86793955 86794168 -155870185 - L2 LINE L2 -816 2498 2302 2003 137 10 0 chr1 86794168 86794460 -155869893 + AluSx SINE Alu 1 295 -17 411 21 0 0 chr1 86794461 86794509 -155869844 + (CA)n Simple_repeat Simple_repeat 2 49 0 252 317 124 52 chr1 86794509 86794713 -155869640 - L2 LINE L2 -1011 2303 2049 422 235 70 70 chr1 86794895 86795095 -155869258 - MER112 DNA MER1_type -60 200 1 777 204 46 36 chr1 86796107 86796303 -155868050 + MIR SINE MIR 65 262 0 325 286 19 3 chr1 86796511 86796672 -155867681 - MIR SINE MIR -34 228 11 555 246 208 11 chr1 86796787 86796970 -155867383 + MIR SINE MIR 3 221 -41 197 302 67 98 chr1 86798029 86798344 -155866009 - L2 LINE L2 -676 2638 2334 2447 74 0 3 chr1 86798808 86799105 -155865248 - AluSc SINE Alu -13 296 1 327 87 0 0 chr1 86799252 86799327 -155865026 + Alu SINE Alu 236 310 0 2039 128 16 7 chr1 86799408 86799713 -155864640 - AluSp SINE Alu -5 308 1 551 171 0 44 chr1 86799764 86799922 -155864431 + CT-rich Low_complexity Low_complexity 3 153 0 1361 192 69 0 chr1 86799922 86800182 -155864171 - AluJo SINE Alu -34 278 1 2307 128 0 0 chr1 86800280 86800592 -155863761 + AluSx SINE Alu 1 312 0 434 299 62 65 chr1 86801634 86802082 -155862271 - MLT1K LTR MaLR -36 552 106 540 304 42 37 chr1 86802181 86802398 -155861955 + MIR SINE MIR 32 249 -13 3370 45 5 0 chr1 86802512 86802935 -155861418 + L1PA4 LINE L1 5730 6154 -1 401 176 22 0 chr1 86803074 86803165 -155861188 - MER102b DNA MER1_type -182 159 67 184 264 7 146 chr1 86803405 86803549 -155860804 + L2 LINE L2 2923 3046 -226 387 282 10 29 chr1 86804539 86804642 -155859711 - MIR SINE MIR -156 106 6 23 33 0 0 chr1 86805602 86805632 -155858721 + AT_rich Low_complexity Low_complexity 1 30 0 482 153 41 0 chr1 86805661 86805759 -155858594 + L1PB4 LINE L1 6053 6154 -2 294 130 0 0 chr1 86805765 86805811 -155858542 - L1MC2 LINE L1 -38 6306 6261 1206 226 0 21 chr1 86806008 86806120 -155858233 - AluJo SINE Alu -74 238 125 2115 147 0 3 chr1 86806120 86806426 -155857927 - AluJb SINE Alu -7 305 1 1206 226 0 21 chr1 86806426 86806556 -155857797 - AluJo SINE Alu -187 125 1 1761 170 15 15 chr1 86807390 86807719 -155856634 + L1MC1 LINE L1 5999 6327 -6 21 0 0 0 chr1 86807902 86807923 -155856430 + AT_rich Low_complexity Low_complexity 1 21 0 2212 133 27 16 chr1 86808713 86809082 -155855271 - THE1C LTR MaLR -2 373 1 6115 28 4 4 chr1 86809091 86809812 -155854541 - L1PA5 LINE L1 -1 6153 5433 890 52 66 0 chr1 86809812 86809948 -155854405 + L1P LINE L1 5219 5363 -783 1763 145 71 34 chr1 86810091 86810415 -155853938 - MER1B DNA MER1_type 0 337 2 316 269 21 71 chr1 86810503 86810644 -155853709 + MER102b DNA MER1_type 1 134 -207 1535 167 98 0 chr1 86810652 86810944 -155853409 - AluJb SINE Alu 0 333 16 207 0 0 0 chr1 86810985 86811008 -155853345 + (A)n Simple_repeat Simple_repeat 1 23 0 270 305 113 0 chr1 86811094 86811235 -155853118 + MER102b DNA MER1_type 154 310 -31 320 214 71 31 chr1 86811550 86811648 -155852705 + MIR SINE MIR 107 208 -54 210 273 0 0 chr1 86811691 86811746 -155852607 + T-rich Low_complexity Low_complexity 1 55 0 1786 269 82 19 chr1 86812593 86813263 -155851090 + L2 LINE L2 2437 3173 -140 2843 79 0 11 chr1 86813263 86813631 -155850722 - THE1B LTR MaLR 0 364 1 1786 269 82 19 chr1 86813631 86813782 -155850571 + L2 LINE L2 3173 3313 0 303 224 0 0 chr1 86814508 86814566 -155849787 + L2 LINE L2 3213 3270 -2 1991 116 63 28 chr1 86815109 86815471 -155848882 - THE1C LTR MaLR 0 375 1 215 318 194 0 chr1 86815499 86815628 -155848725 - L2 LINE L2 -19 3253 3100 2265 126 0 0 chr1 86815716 86816017 -155848336 + AluSx SINE Alu 1 301 -11 217 293 225 46 chr1 86816069 86816393 -155847960 - L2 LINE L2 -337 2977 2596 599 189 163 63 chr1 86816866 86817247 -155847106 + Charlie7 DNA MER1_type 2190 2608 -4 190 333 37 21 chr1 86817260 86817429 -155846924 + L2 LINE L2 2770 2977 -295 1736 103 127 12 chr1 86817462 86817748 -155846605 + AluSx SINE Alu 1 315 0 1404 209 7 33 chr1 86817776 86818078 -155846275 - AluJb SINE Alu -18 294 1 25 0 0 0 chr1 86818078 86818103 -155846250 + AT_rich Low_complexity Low_complexity 1 25 0 845 168 0 0 chr1 86818103 86818228 -155846125 - FLAM_C SINE Alu -18 125 1 200 364 45 56 chr1 86818230 86818428 -155845925 + L2 LINE L2 3026 3221 -51 718 225 63 115 chr1 86819211 86819637 -155844716 - MLT1K LTR MaLR -2 586 183 1442 153 118 13 chr1 86819972 86820390 -155843963 - LTR54 LTR ERV1 -5 493 1 1315 159 69 76 chr1 86820441 86820730 -155843623 - AluJo SINE Alu -25 287 1 740 173 0 47 chr1 86820921 86821071 -155843282 - AluJo SINE Alu -169 143 1 239 276 0 26 chr1 86821351 86821427 -155842926 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 324 0 0 0 chr1 86821480 86821516 -155842837 + (CCCTAA)n Simple_repeat Simple_repeat 1 36 0 1246 135 0 97 chr1 86821518 86821789 -155842564 + AluJo SINE Alu 81 312 0 2274 100 3 3 chr1 86822843 86823143 -155841210 - AluSg SINE Alu -10 300 1 296 328 103 0 chr1 86823422 86823538 -155840815 - MIR SINE MIR -119 143 16 628 184 0 0 chr1 86823754 86823857 -155840496 - FLAM_A SINE Alu -19 123 21 2055 84 0 7 chr1 86823935 86824209 -155840144 - AluY SINE Alu -3 308 37 279 306 89 16 chr1 86824668 86824792 -155839561 + L2 LINE L2 3171 3303 -10 323 326 157 0 chr1 86824825 86825003 -155839350 + MIR SINE MIR 56 261 -1 369 0 0 0 chr1 86825402 86825443 -155838910 + (TG)n Simple_repeat Simple_repeat 2 42 0 207 341 68 30 chr1 86825891 86826023 -155838330 - L2 LINE L2 -19 3294 3158 336 234 299 0 chr1 86826070 86826207 -155838146 + MER5A DNA MER1_type 12 189 0 309 51 0 0 chr1 86826495 86826534 -155837819 + (TG)n Simple_repeat Simple_repeat 2 40 0 1654 228 127 4 chr1 86826536 86827049 -155837304 - L1MC4 LINE L1 -980 7062 6487 444 135 0 0 chr1 86827049 86827123 -155837230 + (TG)n Simple_repeat Simple_repeat 1 74 0 23 33 0 0 chr1 86828291 86828321 -155836032 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr1 86829343 86829364 -155834989 + (T)n Simple_repeat Simple_repeat 1 21 0 253 200 33 0 chr1 86831199 86831259 -155833094 - Alu SINE Alu -3 299 238 1709 161 25 4 chr1 86831313 86831587 -155832766 - AluJb SINE Alu -32 280 1 1243 71 0 0 chr1 86832544 86832699 -155831654 - AluSq SINE Alu -14 299 145 283 263 32 21 chr1 86833237 86833332 -155831021 - MER5A DNA MER1_type -85 104 9 685 298 156 20 chr1 86834328 86834777 -155829576 + L2 LINE L2 2066 2575 -739 459 0 0 0 chr1 86835089 86835140 -155829213 + (TG)n Simple_repeat Simple_repeat 2 52 0 234 0 0 0 chr1 86835493 86835519 -155828834 + (CA)n Simple_repeat Simple_repeat 2 27 0 201 196 0 0 chr1 86835523 86835574 -155828779 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 561 197 41 23 chr1 86835589 86835729 -155828624 - MLT2B2 LTR ERVL -42 478 323 602 352 124 5 chr1 86836062 86836488 -155827865 + L2 LINE L2 2827 3303 -10 700 249 84 40 chr1 86836500 86836725 -155827628 - MIR SINE MIR -10 252 18 183 313 0 15 chr1 86836851 86836918 -155827435 + L3b LINE CR1 1304 1369 -214 245 310 39 47 chr1 86839937 86840066 -155824287 - LTR67 LTR ERVL -333 224 97 1906 164 2 28 chr1 86840522 86840980 -155823373 - L1PB1 LINE L1 -1379 4767 4322 * 5978 126 18 3 chr1 86840968 86842327 -155822026 + L1PB1 LINE L1 4767 6141 -10 276 30 0 0 chr1 86842327 86842360 -155821993 + (CA)n Simple_repeat Simple_repeat 2 34 0 2152 116 7 0 chr1 86843260 86843552 -155820801 - AluSx SINE Alu -18 294 1 541 288 24 12 chr1 86843773 86843943 -155820410 + MIR SINE MIR 91 262 0 1252 79 0 6 chr1 86844890 86845054 -155819299 - AluSq SINE Alu -11 302 140 363 246 31 31 chr1 86845054 86845184 -155819169 + L1ME4a LINE L1 5988 6117 -4 21 0 0 0 chr1 86845766 86845787 -155818566 + AT_rich Low_complexity Low_complexity 1 21 0 436 285 104 8 chr1 86846140 86846389 -155817964 - L1ME4a LINE L1 -78 6043 5771 * 4987 156 55 3 chr1 86846385 86847283 -155817070 - L1M1 LINE L1 -5529 2036 1093 842 194 13 57 chr1 86847364 86847488 -155816865 - L1M1 LINE L1 -7332 233 122 2302 121 3 0 chr1 86847488 86847795 -155816558 - AluSx SINE Alu -4 308 1 842 194 13 57 chr1 86847795 86847897 -155816456 - L1M1 LINE L1 -7443 122 17 24 32 0 0 chr1 86848111 86848142 -155816211 + AT_rich Low_complexity Low_complexity 1 31 0 1674 253 81 34 chr1 86848238 86848804 -155815549 + MLT1E LTR MaLR 1 593 0 31 0 0 0 chr1 86849038 86849069 -155815284 + AT_rich Low_complexity Low_complexity 1 31 0 305 282 71 6 chr1 86849104 86849274 -155815079 - L1ME4a LINE L1 -195 5926 5746 1111 93 0 0 chr1 86851771 86851911 -155812442 - AluSg/x SINE Alu -73 239 100 16588 116 25 17 chr1 86851921 86854689 -155809664 + L1PA6 LINE L1 11 2799 -3347 13797 68 6 0 chr1 86854689 86857307 -155807046 + L1PA6 LINE L1 3517 6154 0 208 131 357 0 chr1 86857366 86857450 -155806903 + MIR SINE MIR 82 195 -67 2132 116 14 3 chr1 86857697 86857991 -155806362 - AluSx SINE Alu -15 297 1 1226 165 0 15 chr1 86858163 86858363 -155805990 + AluJo SINE Alu 1 197 -115 1834 161 10 7 chr1 86858395 86858686 -155805667 + AluJb SINE Alu 1 292 -20 264 308 66 111 chr1 86860177 86860573 -155803780 - L2 LINE L2 -7 3265 2888 345 47 0 0 chr1 86860926 86860969 -155803384 + (CA)n Simple_repeat Simple_repeat 2 44 0 225 347 117 10 chr1 86861238 86861434 -155802919 + L2 LINE L2 2746 2962 -352 725 256 104 57 chr1 86861453 86861855 -155802498 - MLT1J2 LTR MaLR -29 421 1 189 74 0 0 chr1 86861975 86862002 -155802351 + (CAG)n Simple_repeat Simple_repeat 3 29 0 1879 143 7 13 chr1 86862157 86862457 -155801896 - AluJo SINE Alu -14 298 1 25 31 0 0 chr1 86863036 86863068 -155801285 + AT_rich Low_complexity Low_complexity 1 32 0 331 209 45 75 chr1 86864599 86864690 -155799663 - L1M4 LINE L1 -1404 4742 4655 1878 139 11 4 chr1 86864690 86864970 -155799383 - AluSx SINE Alu -10 302 21 331 209 45 75 chr1 86864970 86865012 -155799341 - L1M4 LINE L1 -1491 4655 4613 1250 226 47 56 chr1 86865152 86865550 -155798803 - MLT2E LTR ERVL -231 397 4 320 324 34 39 chr1 86865550 86865707 -155798646 + L2 LINE L2 2458 2615 -699 2507 161 25 2 chr1 86865707 86866154 -155798199 + MSTB2 LTR MaLR 1 457 0 320 324 34 39 chr1 86866154 86866175 -155798178 + L2 LINE L2 2615 2635 -679 465 281 58 0 chr1 86866187 86866308 -155798045 - MER91C DNA MER1_type -12 128 1 275 360 67 0 chr1 86866317 86866467 -155797886 + L2 LINE L2 2654 2813 -501 631 289 38 51 chr1 86866475 86866710 -155797643 + MIR SINE MIR 22 253 -9 269 328 126 45 chr1 86866740 86866938 -155797415 + L2 LINE L2 2840 3053 -219 2761 170 38 6 chr1 86867055 86867554 -155796799 - MLT2B2 LTR ERVL 0 515 1 233 221 65 188 chr1 86867566 86867720 -155796633 + L2 LINE L2 3138 3272 0 2340 67 40 7 chr1 86868608 86868906 -155795447 + AluY SINE Alu 3 310 -1 186 43 0 0 chr1 86869196 86869219 -155795134 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 2168 107 0 7 chr1 86869227 86869517 -155794836 - AluSx SINE Alu -17 295 8 391 263 201 31 chr1 86869527 86869816 -155794537 + L1ME LINE L1 5378 5717 -404 377 242 192 52 chr1 86871940 86872304 -155792049 - MLT1H LTR MaLR 0 549 135 2001 206 74 49 chr1 86872419 86872813 -155791540 + MER119 DNA MER1_type 1 415 -168 2214 125 0 0 chr1 86872813 86873110 -155791243 - AluSx SINE Alu -15 297 1 2001 206 74 49 chr1 86873110 86873283 -155791070 + MER119 DNA MER1_type 415 582 -1 195 342 35 26 chr1 86873333 86873447 -155790906 - L2 LINE L2 -930 2384 2270 24 32 0 0 chr1 86873585 86873616 -155790737 + AT_rich Low_complexity Low_complexity 1 31 0 233 276 26 40 chr1 86873655 86873731 -155790622 - MIR SINE MIR -16 246 172 4454 163 45 2 chr1 86873759 86874618 -155789735 - L1MB4 LINE L1 0 6180 5285 180 0 0 0 chr1 86874687 86874707 -155789646 + (TG)n Simple_repeat Simple_repeat 1 20 0 294 29 0 0 chr1 86874797 86874832 -155789521 + (GA)n Simple_repeat Simple_repeat 1 35 0 854 173 26 0 chr1 86875708 86875864 -155788489 - MER45A DNA AcHobo -16 162 3 211 296 28 14 chr1 86876098 86876169 -155788184 - MIR SINE MIR -55 153 82 2166 104 27 0 chr1 86876354 86876653 -155787700 + AluY SINE Alu 1 307 -4 1185 125 0 0 chr1 86876653 86876813 -155787540 + AluSg/x SINE Alu 134 293 -19 2310 248 52 7 chr1 86876843 86877560 -155786793 + MER20B DNA MER1_type 35 783 0 683 223 83 26 chr1 86878575 86878768 -155785585 + MIR SINE MIR 2 205 -57 357 264 11 44 chr1 86879069 86879160 -155785193 - L2 LINE L2 -1 3271 3184 27741 28 2 0 chr1 86879331 86883591 -155780762 - L1PA3 LINE L1 -5 6150 1886 195 311 0 49 chr1 86883626 86883687 -155780666 - L2 LINE L2 -325 2988 2931 6166 87 52 32 chr1 86883724 86884714 -155779639 - L1PA11 LINE L1 -2 6172 5179 2250 115 3 0 chr1 86884714 86885010 -155779343 - AluSq SINE Alu -16 297 1 6166 87 52 32 chr1 86885010 86885327 -155779026 - L1PA11 LINE L1 -995 5179 4870 441 237 9 9 chr1 86885332 86885446 -155778907 + L1ME LINE L1 5672 5785 -381 2961 143 0 0 chr1 86885446 86885955 -155778398 - L1P LINE L1 -1280 4866 4358 1139 249 37 18 chr1 86885961 86886217 -155778136 - L1MEc LINE L1 -2699 3516 3266 1613 108 8 0 chr1 86886217 86886458 -155777895 + MER75B DNA T2_type 1 243 0 1139 249 37 18 chr1 86886458 86886716 -155777637 - L1MEc LINE L1 -2949 3266 2992 1634 185 63 29 chr1 86886803 86887186 -155777167 - MSTD LTR MaLR 0 396 1 2777 193 50 4 chr1 86887186 86887724 -155776629 - MSTD-int LTR MaLR 0 1735 1173 2369 213 40 39 chr1 86887799 86888429 -155775924 - L1ME1 LINE L1 -134 6032 5399 1786 179 0 10 chr1 86888429 86888730 -155775623 - AluJo SINE Alu -13 299 2 2369 213 40 39 chr1 86888730 86888920 -155775433 - L1ME1 LINE L1 -767 5399 5211 2260 222 43 33 chr1 86888919 86889192 -155775161 - L1MEc LINE L1 -3246 2969 2700 * 1826 215 58 13 chr1 86889192 86889639 -155774714 - MLT1C LTR MaLR 0 467 1 2260 222 43 33 chr1 86889639 86890676 -155773677 - L1MEc LINE L1 -3515 2700 1675 2161 163 22 27 chr1 86890676 86891088 -155773265 + MLT2D LTR ERVL 1 410 -4 2260 222 43 33 chr1 86891088 86891134 -155773219 - L1MEc LINE L1 -4540 1675 460 645 244 17 28 chr1 86891141 86891321 -155773032 - L1MEc LINE L1 -6182 214 37 609 133 86 0 chr1 86891477 86891605 -155772748 - L1MA6 LINE L1 0 6300 6162 261 0 0 0 chr1 86891818 86891847 -155772506 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1775 177 0 0 chr1 86891850 86892132 -155772221 - AluJb SINE Alu -30 282 1 295 301 55 0 chr1 86892196 86892269 -155772084 + L2 LINE L2 3134 3210 -62 524 51 0 13 chr1 86892275 86892353 -155772000 + LTR6B LTR ERV1 1 77 -481 4850 148 8 0 chr1 86892354 86893124 -155771229 + HERVS71 LTR ERV1 7011 7786 -1192 1893 147 6 0 chr1 86893121 86893435 -155770918 + HERVS71 LTR ERV1 8594 8909 -69 * 4221 66 5 11 chr1 86893435 86893996 -155770357 + LTR6B LTR ERV1 1 558 0 265 271 0 0 chr1 86894674 86894733 -155769620 + MIR SINE MIR 204 262 0 326 290 40 0 chr1 86895115 86895215 -155769138 - MIR SINE MIR 0 262 159 1066 224 75 97 chr1 86895438 86896027 -155768326 - MLT1D LTR MaLR 0 626 8 30 0 0 0 chr1 86896141 86896171 -155768182 + AT_rich Low_complexity Low_complexity 1 30 0 1438 184 35 28 chr1 86896172 86896455 -155767898 - AluJo SINE Alu -25 287 3 13342 114 10 68 chr1 86896498 86900561 -155763792 + L1P LINE L1 12 3752 -2394 12915 81 5 0 chr1 86900699 86903261 -155761092 + L1PA7 LINE L1 3569 6147 -7 24 0 0 0 chr1 86903283 86903307 -155761046 + AT_rich Low_complexity Low_complexity 1 24 0 336 300 47 47 chr1 86903320 86903490 -155760863 - MIR SINE MIR -15 247 78 1572 246 80 19 chr1 86903493 86904087 -155760266 - MLT1E3 LTR MaLR 0 624 1 251 338 38 14 chr1 86904277 86904487 -155759866 + L1M4 LINE L1 4034 4248 -1898 379 268 63 50 chr1 86904590 86904829 -155759524 + L1M4 LINE L1 4400 4641 -1505 4151 225 32 6 chr1 86904834 86905733 -155758620 + L1PA13 LINE L1 1 923 -5864 4220 192 52 14 chr1 86905930 86907393 -155756960 + L1PA13 LINE L1 1326 2865 -3932 3759 213 204 16 chr1 86907401 86908790 -155755563 + L1PBa LINE L1 6 1656 -5207 1571 169 78 44 chr1 86908790 86909258 -155755095 + LTR10A LTR ERV1 1 548 -61 9052 209 16 8 chr1 86909271 86912400 -155751953 + L1PBa LINE L1 1653 4866 -1996 9765 209 13 11 chr1 86912665 86914103 -155750250 + L1 LINE L1 3532 4977 -1820 2155 135 0 3 chr1 86914103 86914407 -155749946 - AluSg SINE Alu -7 303 1 9765 209 13 11 chr1 86914407 86915327 -155749026 + L1 LINE L1 4977 5894 -903 490 268 33 8 chr1 86915585 86915745 -155748608 + MLT2E LTR ERVL 7 155 -473 530 320 85 0 chr1 86915749 86915949 -155748404 + MLT2F LTR ERVL 217 433 -230 612 213 0 13 chr1 86916130 86916280 -155748073 + MLT2E LTR ERVL 471 618 -10 317 382 45 0 chr1 86916292 86916402 -155747951 + L2 LINE L2 2924 3038 -234 730 292 97 33 chr1 86916864 86917285 -155747068 - L2 LINE L2 -5 3308 2861 267 103 0 0 chr1 86917288 86917327 -155747026 + (T)n Simple_repeat Simple_repeat 1 39 0 273 0 0 0 chr1 86917779 86917811 -155746542 - U3 snRNA snRNA -185 32 1 599 330 48 9 chr1 86918154 86918381 -155745972 + MIR SINE MIR 6 241 -21 325 282 204 14 chr1 86918748 86918890 -155745463 - L2 LINE L2 -2 3270 3102 406 131 0 0 chr1 86920214 86920275 -155744078 + MLT1H1 LTR MaLR 494 554 -1 786 291 117 27 chr1 86920276 86920678 -155743675 - ERVL LTR ERVL -2314 3450 3013 540 256 48 26 chr1 86920686 86920999 -155743354 - L1ME LINE L1 -590 5574 5255 1954 220 79 48 chr1 86922037 86922669 -155741684 - MLT1E1 LTR MaLR -2 652 1 515 294 68 0 chr1 86924249 86924395 -155739958 + L2 LINE L2 3158 3313 0 183 310 176 14 chr1 86925261 86925403 -155738950 + MIR SINE MIR 32 196 -66 249 247 82 24 chr1 86925663 86925748 -155738605 - MIR SINE MIR -64 144 55 203 356 99 51 chr1 86925777 86926030 -155738323 + L2 LINE L2 2532 2796 -518 511 198 117 0 chr1 86926066 86926177 -155738176 - L2 LINE L2 0 3313 3190 1844 165 114 21 chr1 86926178 86926482 -155737871 + Charlie1b DNA MER1_type 1 366 -2395 2819 172 44 4 chr1 86926482 86926938 -155737415 + MLT2B2 LTR ERVL 1 480 -35 189 94 0 0 chr1 86926938 86926970 -155737383 + (CA)n Simple_repeat Simple_repeat 2 33 0 2819 172 44 4 chr1 86926970 86927008 -155737345 + MLT2B2 LTR ERVL 480 515 0 1844 165 114 21 chr1 86927008 86927177 -155737176 + Charlie1b DNA MER1_type 366 518 -5 204 279 10 48 chr1 86927195 86927299 -155737054 - L2 LINE L2 -129 3184 3085 202 302 25 104 chr1 86927325 86927527 -155736826 + L2 LINE L2 2866 3051 -221 1232 233 113 42 chr1 86927720 86928197 -155736156 - MLT1J LTR MaLR 0 511 1 426 316 88 0 chr1 86929409 86929580 -155734773 - L2 LINE L2 0 3313 3128 265 238 56 63 chr1 86929637 86929763 -155734590 - MIR SINE MIR -51 211 87 241 294 22 88 chr1 86930473 86930609 -155733744 + MIR SINE MIR 5 131 -131 278 181 0 97 chr1 86931458 86931530 -155732823 - MER5A DNA MER1_type -2 187 123 216 296 204 14 chr1 86931471 86931613 -155732740 + MER5A DNA MER1_type 21 189 0 * 400 309 57 0 chr1 86931930 86932053 -155732300 + L2 LINE L2 3143 3272 0 216 0 0 0 chr1 86933213 86933237 -155731116 + (A)n Simple_repeat Simple_repeat 1 24 0 1592 155 8 0 chr1 86933238 86933503 -155730850 - L1MB1 LINE L1 -6 6162 5896 1207 140 0 0 chr1 86933504 86933690 -155730663 + L1MB1 LINE L1 5604 5789 -379 1137 172 5 0 chr1 86933781 86933990 -155730363 - MER2 DNA MER2_type -135 210 1 372 136 86 12 chr1 86933992 86934073 -155730280 + L1MB1 LINE L1 5793 5879 -289 4725 85 0 2 chr1 86934095 86934729 -155729624 + L1PA8 LINE L1 5539 6171 -1 1396 119 17 3 chr1 86935022 86935365 -155728988 + L1PA16 LINE L1 5712 6149 -17 300 300 73 18 chr1 86935642 86935752 -155728601 + MIR3 SINE MIR 72 187 -21 425 323 24 18 chr1 86936029 86936196 -155728157 - L2 LINE L2 -463 2851 2684 2040 161 0 0 chr1 86936972 86937282 -155727071 - AluJb SINE Alu -2 310 1 1794 169 80 5 chr1 86937289 86937958 -155726395 + MER21B LTR ERV1 89 847 -16 618 222 71 80 chr1 86938011 86938236 -155726117 + L2 LINE L2 3087 3309 -4 195 299 172 0 chr1 86938506 86938593 -155725760 - MIR SINE MIR 0 262 161 255 61 0 0 chr1 86938593 86938626 -155725727 + (T)n Simple_repeat Simple_repeat 1 33 0 24 0 0 0 chr1 86938731 86938755 -155725598 + AT_rich Low_complexity Low_complexity 1 24 0 12305 17 0 0 chr1 86938755 86941022 -155723331 - L1HS LINE L1 0 6155 3889 2199 26 0 0 chr1 86941020 86941292 -155723061 + L1HS LINE L1 3639 3910 -2236 * 436 299 22 7 chr1 86941296 86941433 -155722920 - MIR SINE MIR -107 155 17 182 375 88 0 chr1 86941718 86941798 -155722555 - MER5A DNA MER1_type 0 189 103 23 0 0 0 chr1 86941809 86941832 -155722521 + AT_rich Low_complexity Low_complexity 1 23 0 5433 109 14 5 chr1 86941832 86942667 -155721686 - L1MA5A LINE L1 -3 6294 5452 216 135 0 0 chr1 86942958 86942995 -155721358 + (TG)n Simple_repeat Simple_repeat 2 38 0 1334 164 16 4 chr1 86943022 86943277 -155721076 - Tigger7 DNA MER2_type -1 2490 2233 639 173 29 36 chr1 86943277 86943416 -155720937 - Tigger1 DNA MER2_type 0 2418 2281 2368 115 0 3 chr1 86943463 86943776 -155720577 + AluSx SINE Alu 1 312 0 759 116 8 16 chr1 86943800 86943921 -155720432 - Tigger1 DNA MER2_type -2275 143 24 208 257 14 29 chr1 86944527 86944597 -155719756 - MIR SINE MIR 0 262 194 354 240 13 0 chr1 86944627 86944702 -155719651 - MIR SINE MIR -182 80 5 330 67 0 0 chr1 86946222 86946267 -155718086 + (GA)n Simple_repeat Simple_repeat 2 46 0 246 32 0 0 chr1 86946267 86946298 -155718055 + (TG)n Simple_repeat Simple_repeat 1 31 0 542 291 163 26 chr1 86947758 86948211 -155716142 + LTR33 LTR ERVL 1 515 -6 182 317 61 0 chr1 86948211 86948293 -155716060 + L2 LINE L2 2854 2940 -332 298 329 79 14 chr1 86948322 86948462 -155715891 - L3 LINE CR1 -12 1565 1417 189 228 18 53 chr1 86948475 86948532 -155715821 - L2 LINE L2 0 3313 3259 1123 107 0 0 chr1 86948705 86948854 -155715499 - AluSg/x SINE Alu -29 283 135 186 172 0 0 chr1 86948870 86948899 -155715454 + L2 LINE L2 3199 3227 -86 599 221 97 60 chr1 86948917 86949298 -155715055 - MLT1E2 LTR MaLR -118 508 10 509 139 23 70 chr1 86949485 86949547 -155714806 + MLT1E3 LTR MaLR 502 556 -68 1718 56 43 0 chr1 86949547 86949779 -155714574 - L1PA8 LINE L1 -3 6169 5928 509 139 23 70 chr1 86949779 86949845 -155714508 + MLT1E3 LTR MaLR 556 624 0 354 289 119 19 chr1 86950174 86950333 -155714020 + MIR SINE MIR 37 211 -51 335 301 89 20 chr1 86951657 86951803 -155712550 - MIR SINE MIR -51 211 56 22858 172 20 30 chr1 86952207 86952702 -155711651 + L1PA10 LINE L1 77 576 -5913 189 0 0 0 chr1 86952702 86952723 -155711630 + (CACAG)n Simple_repeat Simple_repeat 1 21 0 22858 172 20 30 chr1 86952723 86957848 -155706505 + L1PA10 LINE L1 576 5783 -706 275 0 0 28 chr1 86957849 86957885 -155706468 + (TTA)n Simple_repeat Simple_repeat 3 37 0 766 12 0 0 chr1 86957885 86957971 -155706382 - L1PA4 LINE L1 -18 6137 6052 4761 90 43 4 chr1 86957971 86958649 -155705704 + L1PA10 LINE L1 5778 6483 0 6569 188 75 15 chr1 86958667 86960072 -155704281 + L1PA13 LINE L1 1003 2588 -4209 7098 59 1 0 chr1 86960072 86961757 -155702596 - L1PA5 LINE L1 -2 6152 4470 6569 188 75 15 chr1 86961757 86962398 -155701955 + L1PA13 LINE L1 2588 3189 -3608 760 165 0 6 chr1 86962663 86962821 -155701532 - L1P LINE L1 -2900 3246 3090 351 121 0 0 chr1 86962979 86963037 -155701316 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 238 345 45 9 chr1 86963266 86963376 -155700977 + MIR SINE MIR 128 241 -21 265 270 78 61 chr1 86964183 86964298 -155700055 + L2 LINE L2 3155 3271 -1 779 209 6 25 chr1 86965100 86965285 -155699068 - AluJo SINE Alu 0 313 132 25 31 0 0 chr1 86965295 86965327 -155699026 + AT_rich Low_complexity Low_complexity 1 32 0 650 200 7 15 chr1 86965327 86965462 -155698891 - AluJo SINE Alu -178 134 1 1816 266 54 55 chr1 86965741 86966371 -155697982 + L2 LINE L2 2413 3038 -275 187 316 98 8 chr1 86966351 86966484 -155697869 + L2 LINE L2 1928 2072 -1242 * 7683 165 15 37 chr1 86966497 86969262 -155695091 - L1PA16 LINE L1 -9 6157 3465 843 318 92 25 chr1 86969263 86969709 -155694644 + L2 LINE L2 2060 2535 -779 701 225 147 77 chr1 86969754 86970211 -155694142 + MLT1D LTR MaLR 8 496 -9 268 396 21 11 chr1 86970218 86970405 -155693948 + L2 LINE L2 2567 2755 -559 2405 163 69 23 chr1 86972019 86972498 -155691855 + MLT1D LTR MaLR 1 501 -4 226 334 100 75 chr1 86973001 86973453 -155690900 - L2 LINE L2 0 3272 2810 346 352 60 25 chr1 86973547 86973746 -155690607 - L2 LINE L2 -46 3226 3021 2133 82 0 60 chr1 86973836 86974151 -155690202 - AluSx SINE Alu -16 296 1 226 311 25 66 chr1 86974157 86974279 -155690074 - MER5A DNA MER1_type -44 145 29 324 0 0 0 chr1 86974891 86974927 -155689426 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 342 349 76 35 chr1 86976181 86976353 -155688000 + L2 LINE L2 2575 2753 -561 1182 169 18 0 chr1 86976365 86976584 -155687769 + MLT1B LTR MaLR 1 223 -167 1794 158 41 11 chr1 86976585 86977032 -155687321 + L1M2 LINE L1 5168 5617 -695 222 349 187 12 chr1 86977034 86977200 -155687153 - L2 LINE L2 -352 2962 2768 414 136 50 2 chr1 86977204 86977345 -155687008 - MLT1B LTR MaLR -1 389 210 234 0 0 0 chr1 86977345 86977371 -155686982 + (T)n Simple_repeat Simple_repeat 1 26 0 7889 16 0 0 chr1 86977400 86978661 -155685692 - L1PA2 LINE L1 0 6155 4895 25 0 0 0 chr1 86978667 86978692 -155685661 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 86978720 86978742 -155685611 + AT_rich Low_complexity Low_complexity 1 22 0 1307 200 145 52 chr1 86978742 86979246 -155685107 - L1MA9 LINE L1 -38 6274 5724 215 275 0 0 chr1 86979305 86979345 -155685008 + L2 LINE L2 3137 3176 -96 426 300 46 28 chr1 86980649 86980849 -155683504 - MIR SINE MIR -50 212 6 397 295 115 6 chr1 86981395 86981578 -155682775 - MIR SINE MIR 0 262 60 180 310 110 40 chr1 86982201 86982301 -155682052 + MIR SINE MIR 31 137 -71 758 276 202 19 chr1 86983103 86983670 -155680683 + L2 LINE L2 2646 3313 0 240 211 19 0 chr1 86983668 86983720 -155680633 - L2 LINE L2 0 3313 3261 * 688 165 25 44 chr1 86983910 86984068 -155680285 - MER58B DNA MER1_type 0 341 187 2857 226 5 8 chr1 86985187 86985941 -155678412 - L1MA9 LINE L1 -825 5321 4570 332 305 11 0 chr1 86986498 86986593 -155677760 + CT-rich Low_complexity Low_complexity 5 100 0 467 249 78 87 chr1 86987703 86988037 -155676316 + MLT1I LTR MaLR 79 409 0 2694 119 4 44 chr1 86988300 86988578 -155675775 + Tigger2a DNA MER2_type 1 289 -2419 2618 83 11 0 chr1 86988578 86988929 -155675424 + THE1A LTR MaLR 1 355 0 11606 93 3 12 chr1 86988929 86990523 -155673830 + THE1A-int LTR MaLR 1 1580 0 2580 79 35 0 chr1 86990523 86990866 -155673487 + THE1A LTR MaLR 1 355 0 2694 119 4 44 chr1 86990866 86991037 -155673316 + Tigger2a DNA MER2_type 286 434 0 253 318 91 0 chr1 86992278 86992388 -155671965 + L2 LINE L2 3190 3309 -4 276 353 108 0 chr1 86992563 86992702 -155671651 + MIR SINE MIR 20 173 -89 1708 149 54 40 chr1 86993219 86993589 -155670764 + THE1C LTR MaLR 1 375 0 270 313 172 0 chr1 86993943 86994077 -155670276 - MIR SINE MIR -73 189 33 254 394 20 56 chr1 86994435 86994684 -155669669 + L2 LINE L2 151 390 -2924 1190 170 24 24 chr1 86994744 86994991 -155669362 + Tigger1 DNA MER2_type 2172 2418 0 224 283 66 20 chr1 86995176 86995328 -155669025 - L2 LINE L2 -1224 2090 1932 2378 58 3 13 chr1 86995536 86995845 -155668508 + AluY SINE Alu 6 311 0 2404 249 81 33 chr1 86996038 86997010 -155667343 - L1MEc LINE L1 -5340 1056 38 272 273 15 0 chr1 86997931 86997997 -155666356 - L2 LINE L2 -1 3312 3246 519 17 0 0 chr1 86998002 86998062 -155666291 + (CCAA)n Simple_repeat Simple_repeat 2 61 0 1731 201 17 44 chr1 86998172 86998579 -155665774 + MSTD LTR MaLR 1 396 0 193 327 0 0 chr1 86999983 87000038 -155664315 + MIR SINE MIR 93 147 -115 216 408 107 0 chr1 87000124 87000227 -155664126 + L2 LINE L2 3158 3271 -1 297 207 66 83 chr1 87000535 87000656 -155663697 - L1ME3 LINE L1 -83 6079 5961 1588 250 120 51 chr1 87000744 87001652 -155662701 - L1MC5 LINE L1 -430 7531 6605 347 256 0 67 chr1 87002045 87002135 -155662218 + L2 LINE L2 3189 3272 0 1998 128 14 0 chr1 87002707 87002997 -155661356 - AluSq SINE Alu -19 294 1 2935 259 139 39 chr1 87003572 87004949 -155659404 + Charlie8 DNA MER1_type 27 1541 -876 40535 65 12 5 chr1 87005264 87011366 -155652987 + L1PA6 LINE L1 4 6151 -3 365 262 47 0 chr1 87012516 87012623 -155651730 + Charlie8 DNA MER1_type 1548 1659 -758 192 149 30 15 chr1 87013033 87013100 -155651253 + (TA)n Simple_repeat Simple_repeat 1 68 0 629 266 5 63 chr1 87013685 87013892 -155650461 + MIR SINE MIR 56 250 -12 188 338 44 22 chr1 87013924 87014060 -155650293 - L2 LINE L2 -2529 785 647 644 257 14 74 chr1 87015171 87015537 -155648816 - L1M4 LINE L1 -2768 3378 3035 508 200 200 46 chr1 87015851 87016046 -155648307 - MLT1H1 LTR MaLR -5 550 326 315 265 50 68 chr1 87016323 87016542 -155647811 - L1MCc LINE L1 -6175 248 34 863 236 62 36 chr1 87016685 87016910 -155647443 - ERVL LTR ERVL -3221 2543 2313 23 0 0 0 chr1 87016936 87016959 -155647394 + AT_rich Low_complexity Low_complexity 1 23 0 710 198 0 0 chr1 87016963 87017084 -155647269 - FLAM_A SINE Alu -12 121 1 1077 278 101 6 chr1 87018978 87019403 -155644950 - MLT2E LTR ERVL -6 622 93 3493 259 48 5 chr1 87019808 87021071 -155643282 - ERVL LTR ERVL -483 5281 3920 1419 268 34 3 chr1 87021063 87021417 -155642936 - ERVL LTR ERVL -3089 2675 2311 * 1299 233 26 8 chr1 87021448 87021839 -155642514 + L1M4 LINE L1 2636 3033 -3113 2260 150 17 19 chr1 87021849 87022465 -155641888 - L1M2 LINE L1 -634 5678 5063 331 135 72 8 chr1 87022478 87022738 -155641615 + (TA)n Simple_repeat Simple_repeat 1 276 0 2662 112 82 40 chr1 87022786 87023284 -155641069 + L1MA9 LINE L1 5774 6292 -20 783 204 42 0 chr1 87023313 87023529 -155640824 + L1M4 LINE L1 3035 3259 -2887 4077 145 74 43 chr1 87023550 87024371 -155639982 + MER4D LTR ERV1 1 847 -56 4171 157 8 14 chr1 87024371 87025086 -155639267 - MER50 LTR ERV1 -23 711 1 391 131 0 0 chr1 87025086 87025147 -155639206 + MER4E LTR ERV1 719 779 0 257 252 223 0 chr1 87025149 87025252 -155639101 + L1M4 LINE L1 3286 3411 -2735 1617 165 19 113 chr1 87025266 87025773 -155638580 + L1M4 LINE L1 5189 5647 -527 23 68 0 0 chr1 87026272 87026316 -155638037 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr1 87026448 87026483 -155637870 + AT_rich Low_complexity Low_complexity 1 35 0 53 57 0 0 chr1 87026544 87026632 -155637721 + AT_rich Low_complexity Low_complexity 1 88 0 484 297 6 28 chr1 87027066 87027388 -155636965 + CT-rich Low_complexity Low_complexity 1 314 0 270 254 16 0 chr1 87028103 87028166 -155636187 - L2 LINE L2 0 3313 3250 297 363 30 36 chr1 87028995 87029163 -155635190 - MIR SINE MIR -74 188 22 322 300 50 0 chr1 87029885 87029985 -155634368 - MIR SINE MIR -67 141 37 27 0 0 0 chr1 87030060 87030087 -155634266 + AT_rich Low_complexity Low_complexity 1 27 0 407 380 59 21 chr1 87030170 87030596 -155633757 + L2 LINE L2 997 1438 -1876 666 261 56 0 chr1 87030662 87030842 -155633511 + MIR SINE MIR 8 197 -65 6952 57 7 0 chr1 87031234 87032504 -155631849 + L1PA7 LINE L1 4863 6139 -15 304 250 0 43 chr1 87032509 87032601 -155631752 - L1MC4 LINE L1 -1339 6703 6616 239 363 121 0 chr1 87032636 87032760 -155631593 - MIR3 SINE MIR -25 183 45 1777 137 12 28 chr1 87033112 87033434 -155630919 + L1MA8 LINE L1 5975 6291 0 1550 236 305 19 chr1 87033443 87034121 -155630232 - L1MC4 LINE L1 -586 7456 6585 479 247 0 0 chr1 87035717 87035810 -155628543 + L2 LINE L2 3180 3272 0 2051 122 0 4 chr1 87035941 87036220 -155628133 + AluSg SINE Alu 1 278 -32 304 0 64 21 chr1 87036222 87036269 -155628084 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 727 214 0 0 chr1 87036764 87036890 -155627463 - FLAM_A SINE Alu -6 127 2 651 317 16 24 chr1 87037031 87037277 -155627076 + MIR SINE MIR 12 255 -7 226 204 23 0 chr1 87037886 87037930 -155626423 - L2 LINE L2 0 3272 3228 8995 50 0 3 chr1 87038208 87038219 -155626134 + L1P LINE L1 3179 3189 -2957 7010 60 2 5 chr1 87038219 87039393 -155624960 - L1PA5 LINE L1 0 6154 4980 8995 50 0 3 chr1 87039393 87040513 -155623840 + L1P LINE L1 3189 4306 -1840 236 311 48 32 chr1 87040538 87040716 -155623637 - MER5A DNA MER1_type -5 173 7 210 147 0 0 chr1 87040820 87040854 -155623499 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 1666 181 10 3 chr1 87042235 87042312 -155622041 - L1MB5 LINE L1 -36 6138 6062 2662 193 60 14 chr1 87042312 87043247 -155621106 - L1MD3 LINE L1 -412 6260 5521 307 184 184 0 chr1 87043249 87043336 -155621017 - L1MD3 LINE L1 -5610 932 830 280 271 111 7 chr1 87043346 87043490 -155620863 - L1MD3 LINE L1 -6376 166 8 1242 274 84 34 chr1 87043546 87044021 -155620332 + MLT1D LTR MaLR 6 504 -1 285 100 0 0 chr1 87044129 87044179 -155620174 + (CA)n Simple_repeat Simple_repeat 1 50 0 183 80 0 0 chr1 87044187 87044212 -155620141 + (TA)n Simple_repeat Simple_repeat 2 26 0 562 218 14 35 chr1 87044789 87044931 -155619422 + MLT1A2 LTR MaLR 236 374 0 1818 192 52 18 chr1 87045858 87046239 -155618114 - MLT1D LTR MaLR -5 500 107 209 328 31 110 chr1 87046240 87046557 -155617796 - L2 LINE L2 -90 3182 2891 325 282 145 0 chr1 87046728 87046840 -155617513 + MIR3 SINE MIR 60 197 -11 2036 157 72 66 chr1 87048555 87048601 -155615752 - MLT1D LTR MaLR 0 505 461 2140 153 122 0 chr1 87048601 87048986 -155615367 - MSTB1 LTR MaLR 0 432 1 2036 157 72 66 chr1 87048986 87049441 -155614912 - MLT1D LTR MaLR -44 461 1 2149 114 0 10 chr1 87049482 87049781 -155614572 + AluSx SINE Alu 1 296 -16 243 346 37 0 chr1 87049902 87050009 -155614344 + MIR SINE MIR 138 248 -14 522 226 22 18 chr1 87050262 87050595 -155613758 + CT-rich Low_complexity Low_complexity 1 334 0 491 270 39 1 chr1 87050698 87050848 -155613505 - MIR3 SINE MIR -49 159 2 23 0 0 0 chr1 87051553 87051576 -155612777 + AT_rich Low_complexity Low_complexity 1 23 0 2157 118 3 0 chr1 87052013 87052300 -155612053 + AluSq SINE Alu 1 288 -25 37 39 0 0 chr1 87053877 87053928 -155610425 + AT_rich Low_complexity Low_complexity 1 51 0 2694 36 0 0 chr1 87053936 87054241 -155610112 - AluY SINE Alu -6 305 1 2576 122 3 0 chr1 87054612 87054973 -155609380 + THE1B LTR MaLR 3 364 0 183 412 44 0 chr1 87055183 87055297 -155609056 + L3 LINE CR1 115 233 -1344 962 334 203 9 chr1 87055472 87056269 -155608084 + L3 LINE CR1 459 1410 -167 223 230 81 69 chr1 87057127 87057214 -155607139 + MIR SINE MIR 175 262 0 180 283 22 0 chr1 87057416 87057462 -155606891 - L2 LINE L2 -90 3182 3136 993 185 30 5 chr1 87057586 87057786 -155606567 + MLT1C LTR MaLR 1 205 -262 411 353 108 0 chr1 87058060 87058292 -155606061 - MIR SINE MIR -4 258 2 2088 148 15 0 chr1 87058533 87058870 -155605483 + MER2 DNA MER2_type 1 342 -2 2339 96 0 13 chr1 87059402 87059715 -155604638 - AluSc SINE Alu 0 309 1 352 264 57 29 chr1 87060864 87061004 -155603349 + MIR SINE MIR 119 262 0 655 280 31 92 chr1 87061507 87061950 -155602403 + MLT1J1 LTR MaLR 1 414 -32 336 328 60 34 chr1 87062249 87062759 -155601594 + L1MEc LINE L1 1102 1530 -1043 328 186 0 23 chr1 87063131 87063217 -155601136 + C-rich Low_complexity Low_complexity 5 88 0 1106 236 72 54 chr1 87063326 87063357 -155600996 - MLT1J1 LTR MaLR -50 396 367 2780 173 91 62 chr1 87063357 87064064 -155600289 + LTR8A LTR ERV1 1 727 0 1106 236 72 54 chr1 87064064 87064421 -155599932 - MLT1J1 LTR MaLR -79 367 1 287 254 77 48 chr1 87064611 87064820 -155599533 + L1MEc LINE L1 2138 2352 -3794 2237 153 39 13 chr1 87064909 87065294 -155599059 - Tigger3(Golem) DNA MER2_type 0 3029 2635 21 0 0 0 chr1 87065443 87065464 -155598889 + AT_rich Low_complexity Low_complexity 1 21 0 219 276 52 0 chr1 87065659 87065717 -155598636 - L2 LINE L2 -5 3308 3248 1430 258 70 62 chr1 87066448 87066976 -155597377 - MLT1G1 LTR MaLR 0 595 64 2329 106 0 0 chr1 87067247 87067550 -155596803 + AluSx SINE Alu 1 303 -9 1773 132 127 43 chr1 87067573 87067943 -155596410 - MSTA LTR MaLR -27 401 1 416 268 14 29 chr1 87069428 87069566 -155594787 - L2 LINE L2 -10 3303 3168 235 356 111 39 chr1 87070088 87070296 -155594057 - L2 LINE L2 -44 3228 3006 542 89 127 0 chr1 87070398 87070477 -155593876 - 5S rRNA rRNA -31 90 2 780 143 8 136 chr1 87071992 87072243 -155592110 + MER20 DNA MER1_type 1 219 0 183 156 0 0 chr1 87072301 87072333 -155592020 + GA-rich Low_complexity Low_complexity 2 33 0 310 304 46 60 chr1 87072978 87073317 -155591036 + L2 LINE L2 2722 3059 -213 555 196 29 142 chr1 87073455 87073519 -155590834 - MER5A DNA MER1_type 0 189 119 1555 91 9 0 chr1 87073519 87073740 -155590613 + L1PA8 LINE L1 5949 6171 -1 555 196 29 142 chr1 87073740 87073879 -155590474 - MER5A DNA MER1_type -70 119 9 820 204 19 0 chr1 87075264 87075426 -155588927 - MLT1B LTR MaLR 0 390 226 4683 181 30 21 chr1 87075797 87077257 -155587096 - L1MB5 LINE L1 -8 6166 4693 24 0 0 0 chr1 87078587 87078611 -155585742 + AT_rich Low_complexity Low_complexity 1 24 0 695 161 7 0 chr1 87080710 87080847 -155583506 + L1MB7 LINE L1 6031 6168 -16 506 204 217 74 chr1 87081960 87082190 -155582163 - L2 LINE L2 -1 3312 3050 299 330 99 16 chr1 87082242 87082424 -155581929 - L2 LINE L2 0 3313 3117 209 254 127 28 chr1 87083610 87083681 -155580672 + MIR SINE MIR 6 83 -179 265 247 55 61 chr1 87083734 87083861 -155580492 + MIR SINE MIR 86 219 -43 953 50 0 0 chr1 87084068 87084187 -155580166 + L1PA3 LINE L1 6037 6155 0 3197 29 0 3 chr1 87084189 87084571 -155579782 + L1PA5 LINE L1 5770 6150 -4 13574 196 154 5 chr1 87085122 87086070 -155578283 - L1P3 LINE L1 -869 6715 5910 2265 107 3 0 chr1 87086070 87086370 -155577983 - AluSx SINE Alu -11 301 1 13574 196 154 5 chr1 87086370 87088764 -155575589 - L1P3 LINE L1 -1674 5910 2875 3618 79 10 0 chr1 87088795 87089286 -155575067 - L1PA7 LINE L1 -13 6141 5646 23878 117 8 23 chr1 87089290 87093901 -155570452 - L1P3 LINE L1 -1832 4629 4 2211 147 54 12 chr1 87093891 87094299 -155570054 - L1P3 LINE L1 -4723 2858 2434 * 1244 282 27 53 chr1 87094336 87094780 -155569573 - L1P3 LINE L1 -5236 2348 1223 2102 147 0 0 chr1 87094967 87095279 -155569074 + AluJo SINE Alu 1 312 0 333 290 49 43 chr1 87095392 87095554 -155568799 + L1ME4a LINE L1 5956 6118 -3 366 312 21 43 chr1 87095962 87096103 -155568250 - L1ME4a LINE L1 -19 6102 5965 289 79 318 16 chr1 87097315 87097354 -155566999 - MLT2A1 LTR ERVL 0 444 418 237 65 0 0 chr1 87097354 87097385 -155566968 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 289 79 318 16 chr1 87097385 87097408 -155566945 - MLT2A1 LTR ERVL -26 418 363 2529 114 30 18 chr1 87097467 87097862 -155566491 - MLT2A1 LTR ERVL -44 400 1 1931 164 65 38 chr1 87098295 87098740 -155565613 - MSTB2 LTR MaLR 0 457 1 274 303 0 0 chr1 87098959 87099025 -155565328 - L2 LINE L2 -13 3259 3194 400 222 9 93 chr1 87099142 87099250 -155565103 - L2 LINE L2 -4 3268 3170 5932 152 24 16 chr1 87099318 87100903 -155563450 - L1MA4 LINE L1 0 6300 4701 1743 175 38 35 chr1 87100903 87101048 -155563305 + L1 LINE L1 4314 4457 -1689 2068 129 0 0 chr1 87101048 87101364 -155562989 + AluSc SINE Alu 1 316 0 1743 175 38 35 chr1 87101364 87101610 -155562743 + L1 LINE L1 4457 4708 -1438 279 336 8 23 chr1 87101611 87101739 -155562614 + L2 LINE L2 2661 2786 -528 699 281 48 9 chr1 87102952 87103180 -155561173 - MIR SINE MIR -6 256 20 14228 220 42 11 chr1 87104033 87109513 -155554840 + L1PA12 LINE L1 21 6071 -1513 820 154 7 0 chr1 87109530 87109673 -155554680 + L1PA13 LINE L1 6017 6160 -3 448 247 18 22 chr1 87110449 87110583 -155553770 + MIR SINE MIR 57 190 -64 22 70 0 0 chr1 87110613 87110656 -155553697 + AT_rich Low_complexity Low_complexity 1 43 0 241 183 5 102 chr1 87110656 87110842 -155553511 + (TATAA)n Simple_repeat Simple_repeat 2 169 0 139 62 0 0 chr1 87110853 87111097 -155553256 + AT_rich Low_complexity Low_complexity 1 244 0 1902 167 0 3 chr1 87111165 87111471 -155552882 + AluJo SINE Alu 1 305 -7 244 298 0 0 chr1 87111803 87111850 -155552503 + Alu SINE Alu 231 277 -25 353 246 135 32 chr1 87111853 87111979 -155552374 + MER5A DNA MER1_type 51 189 0 22 99 0 0 chr1 87112453 87112524 -155551829 + AT_rich Low_complexity Low_complexity 1 71 0 21 36 0 0 chr1 87112960 87112988 -155551365 + AT_rich Low_complexity Low_complexity 1 28 0 741 276 33 23 chr1 87113217 87113431 -155550922 - MIR SINE MIR -13 249 34 201 136 0 45 chr1 87114937 87114981 -155549372 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 442 245 34 20 chr1 87115134 87115281 -155549072 + L1ME LINE L1 5534 5682 -439 180 0 0 0 chr1 87115785 87115805 -155548548 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1080 133 0 0 chr1 87115912 87116092 -155548261 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 183 156 0 0 chr1 87116092 87116124 -155548229 + CT-rich Low_complexity Low_complexity 1 32 0 1208 88 0 6 chr1 87116124 87116305 -155548048 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1772 136 0 39 chr1 87116311 87116590 -155547763 - AluSx SINE Alu -44 268 1 2007 233 86 13 chr1 87117128 87117745 -155546608 - L1MC4 LINE L1 -140 7902 7241 1695 161 91 168 chr1 87117746 87118436 -155545917 - L1MC4 LINE L1 -959 7083 6447 280 298 207 5 chr1 87119041 87119229 -155545124 - MIR SINE MIR 0 262 37 287 266 89 10 chr1 87122605 87122717 -155541636 - MIR SINE MIR -87 121 1 24 77 0 0 chr1 87123399 87123451 -155540902 + AT_rich Low_complexity Low_complexity 1 52 0 318 26 0 0 chr1 87123597 87123636 -155540717 + (TG)n Simple_repeat Simple_repeat 1 39 0 1749 153 44 7 chr1 87125350 87125625 -155538728 - AluSx SINE Alu -23 289 5 266 262 0 16 chr1 87125810 87125871 -155538482 - MLT1K LTR MaLR -340 248 189 193 342 175 9 chr1 87126316 87126430 -155537923 - L2 LINE L2 0 3272 3140 2386 280 93 40 chr1 87126783 87126816 -155537537 + L2 LINE L2 1243 1273 -2041 2307 105 0 6 chr1 87126816 87127130 -155537223 - AluSx SINE Alu 0 312 1 2386 280 93 40 chr1 87127130 87128028 -155536325 + L2 LINE L2 1273 2224 -1090 785 262 151 73 chr1 87128031 87129080 -155535273 - L1MEc LINE L1 -4035 2275 1146 352 264 91 9 chr1 87129095 87129205 -155535148 - L1MEc LINE L1 -5071 1048 930 2076 155 36 44 chr1 87129440 87129828 -155534525 - MLT1B LTR MaLR -5 385 1 22 0 0 0 chr1 87130488 87130510 -155533843 + AT_rich Low_complexity Low_complexity 1 22 0 810 314 104 18 chr1 87130960 87131402 -155532951 - MLT1J LTR MaLR -30 481 2 427 286 167 42 chr1 87131562 87131873 -155532480 - LTR16A LTR ERVL -8 442 93 196 329 138 38 chr1 87132012 87132222 -155532131 - L2 LINE L2 -218 3054 2824 * 386 320 150 26 chr1 87132203 87132437 -155531916 - L2 LINE L2 -439 2875 2613 195 232 0 0 chr1 87133114 87133170 -155531183 + (TA)n Simple_repeat Simple_repeat 1 56 0 194 259 43 79 chr1 87133230 87133369 -155530984 + L2 LINE L2 3180 3313 0 614 293 42 42 chr1 87133408 87133647 -155530706 - MIR SINE MIR -18 244 6 2152 116 129 8 chr1 87133897 87134278 -155530075 - MSTA LTR MaLR 0 428 2 296 329 107 21 chr1 87134481 87134621 -155529732 + L2 LINE L2 3121 3272 0 1184 173 5 5 chr1 87135292 87135531 -155528822 - AluJo SINE Alu 0 319 81 23 0 0 0 chr1 87135799 87135822 -155528531 + AT_rich Low_complexity Low_complexity 1 23 0 557 286 19 0 chr1 87135858 87136019 -155528334 + L2 LINE L2 2158 2321 -993 290 315 106 72 chr1 87136102 87136371 -155527982 - L2 LINE L2 -1142 2172 1889 252 59 0 0 chr1 87136371 87136405 -155527948 + (TG)n Simple_repeat Simple_repeat 1 34 0 290 315 106 72 chr1 87136405 87136456 -155527897 - L2 LINE L2 -1425 1889 1841 1423 172 56 8 chr1 87136458 87136752 -155527601 - AluSg SINE Alu 0 309 3 336 310 125 9 chr1 87137026 87137242 -155527111 - L2 LINE L2 -1480 1834 1594 377 302 113 28 chr1 87138149 87138361 -155525992 + L3 LINE CR1 1170 1399 -178 187 327 0 0 chr1 87139042 87139097 -155525256 - MIR SINE MIR -97 111 57 240 293 116 18 chr1 87139415 87139579 -155524774 - L1M4 LINE L1 -1917 4229 4050 301 240 32 56 chr1 87139644 87139769 -155524584 - MER103 DNA DNA -10 156 35 280 217 0 24 chr1 87139947 87140030 -155524323 - L1M4 LINE L1 -2191 3955 3875 262 345 79 24 chr1 87140074 87140239 -155524114 + MIR SINE MIR 6 179 -83 231 255 0 0 chr1 87140230 87140277 -155524076 + L2 LINE L2 3210 3256 -16 * 771 325 69 35 chr1 87140445 87141211 -155523142 - L1M4 LINE L1 -2793 3353 2562 575 349 38 16 chr1 87141312 87141679 -155522674 - L2 LINE L2 -494 2820 2446 232 260 39 0 chr1 87142308 87142385 -155521968 + (TA)n Simple_repeat Simple_repeat 2 81 0 1401 134 36 24 chr1 87143288 87143541 -155520812 - MSTB1 LTR MaLR 0 432 177 941 99 15 8 chr1 87143543 87143674 -155520679 + AluSq/x SINE Alu 1 132 -180 216 67 0 0 chr1 87143676 87143706 -155520647 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1048 157 58 0 chr1 87143706 87143878 -155520475 - MSTB1 LTR MaLR -250 182 1 906 238 35 5 chr1 87144026 87144228 -155520125 + MIR SINE MIR 1 208 -54 331 267 93 0 chr1 87144320 87144406 -155519947 + L2 LINE L2 1821 1914 -1400 745 344 90 22 chr1 87144451 87144905 -155519448 + L2 LINE L2 2144 2628 -686 229 303 15 15 chr1 87145601 87145667 -155518686 + L2 LINE L2 2625 2690 -624 1297 187 15 115 chr1 87146504 87146835 -155517518 + MLT1A1 LTR MaLR 1 298 -67 461 198 90 18 chr1 87146849 87146960 -155517393 + MIR SINE MIR 113 231 -31 29 28 0 0 chr1 87147526 87147562 -155516791 + AT_rich Low_complexity Low_complexity 1 36 0 267 280 34 40 chr1 87147831 87148069 -155516284 - L1MC/D LINE L1 -517 5661 5528 496 246 13 125 chr1 87148074 87148379 -155515974 - L1 LINE L1 -759 5387 5117 370 82 20 0 chr1 87148516 87148565 -155515788 - MLT1B LTR MaLR 0 390 341 226 346 100 8 chr1 87148579 87148709 -155515644 + L2 LINE L2 2152 2293 -1021 472 68 27 0 chr1 87148754 87148827 -155515526 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1953 133 41 57 chr1 87148827 87149195 -155515158 + THE1B LTR MaLR 2 363 -1 563 0 15 0 chr1 87149195 87149262 -155515091 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 1159 203 131 47 chr1 87149263 87149623 -155514730 + MLT2B1 LTR ERVL 6 395 -125 813 180 19 31 chr1 87149599 87149760 -155514593 + LTR32 LTR ERVL 310 468 -3 * 870 233 94 45 chr1 87149760 87150134 -155514219 + L2 LINE L2 1361 1752 -1562 550 274 38 6 chr1 87150318 87150475 -155513878 - MIR SINE MIR -97 165 4 24 35 0 53 chr1 87150795 87150852 -155513501 + AT_rich Low_complexity Low_complexity 1 54 0 777 217 74 70 chr1 87151353 87151597 -155512756 + MIR SINE MIR 15 259 -3 30 27 0 0 chr1 87151918 87151955 -155512398 + AT_rich Low_complexity Low_complexity 1 37 0 1565 25 0 25 chr1 87152006 87152202 -155512151 - L1PA4 LINE L1 -1 6154 5964 193 324 63 0 chr1 87152413 87152524 -155511829 - MIR SINE MIR -44 218 101 1379 193 11 7 chr1 87153224 87153498 -155510855 + Tigger1 DNA MER2_type 1 275 -2143 7467 112 15 3 chr1 87153514 87154670 -155509683 + Tigger1 DNA MER2_type 397 1566 -852 8736 199 15 6 chr1 87154688 87157396 -155506957 - L1PA15 LINE L1 -2 7601 4878 5824 262 27 36 chr1 87157399 87161715 -155502638 - L1PA15 LINE L1 -2771 4813 1 3711 151 14 0 chr1 87161723 87162354 -155501999 + Tigger1 DNA MER2_type 1552 2191 -227 1133 204 78 17 chr1 87162357 87162587 -155501766 - AluJo SINE Alu -68 244 1 710 121 17 0 chr1 87162587 87162703 -155501650 + Tigger1 DNA MER2_type 2300 2417 -1 828 258 56 98 chr1 87162872 87163302 -155501051 - L2 LINE L2 -98 3215 2804 21 36 0 0 chr1 87163609 87163637 -155500716 + AT_rich Low_complexity Low_complexity 1 28 0 1978 186 9 33 chr1 87164656 87164696 -155499657 - MLT2D LTR ERVL 0 414 375 420 20 0 0 chr1 87164696 87164745 -155499608 + (CA)n Simple_repeat Simple_repeat 2 50 0 1978 186 9 33 chr1 87164745 87165128 -155499225 - MLT2D LTR ERVL -39 375 1 702 198 71 140 chr1 87166359 87166395 -155497958 + MLT2C2 LTR ERVL 91 128 -336 1861 163 0 3 chr1 87166395 87166721 -155497632 + AluSx SINE Alu 1 325 0 702 198 71 140 chr1 87166721 87167026 -155497327 + MLT2C2 LTR ERVL 128 405 -59 393 75 0 0 chr1 87167026 87167079 -155497274 + (TG)n Simple_repeat Simple_repeat 2 54 0 702 198 71 140 chr1 87167079 87167129 -155497224 + MLT2C2 LTR ERVL 405 457 -7 190 323 15 0 chr1 87167218 87167283 -155497070 - MIR SINE MIR -80 128 63 26 50 0 0 chr1 87167738 87167778 -155496575 + AT_rich Low_complexity Low_complexity 1 40 0 237 289 122 0 chr1 87168184 87168274 -155496079 - L2 LINE L2 0 3272 3172 1017 177 67 4 chr1 87168294 87168548 -155495805 - MER45B DNA AcHobo -60 980 711 1410 301 67 41 chr1 87168657 87169312 -155495041 - MER45C DNA AcHobo -810 143 100 1040 210 80 4 chr1 87169312 87169407 -155494946 + AluJb SINE Alu 27 113 -206 204 67 0 0 chr1 87169407 87169437 -155494916 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1040 210 80 4 chr1 87169437 87169616 -155494737 + AluJb SINE Alu 113 319 0 369 295 48 0 chr1 87169617 87169722 -155494631 - MER45C DNA AcHobo -842 111 2 447 328 78 16 chr1 87170192 87170384 -155493969 + MIR SINE MIR 2 205 -57 1504 96 0 0 chr1 87170735 87170944 -155493409 + L1PA7 LINE L1 5943 6151 -3 390 256 151 33 chr1 87171282 87171491 -155492862 + MIR SINE MIR 16 252 -10 205 171 0 0 chr1 87171802 87171837 -155492516 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr1 87172268 87172296 -155492057 + AT_rich Low_complexity Low_complexity 1 28 0 210 338 0 0 chr1 87172397 87172465 -155491888 - L2 LINE L2 -553 2761 2694 486 298 35 45 chr1 87172488 87172686 -155491667 - MIR SINE MIR -45 217 22 206 284 0 95 chr1 87172693 87172788 -155491565 - L2 LINE L2 -646 2668 2583 1605 179 26 59 chr1 87172952 87173342 -155491011 - MLT1B LTR MaLR -13 377 1 435 283 106 28 chr1 87173343 87174020 -155490333 + L1ME3A LINE L1 4891 5659 -503 5929 35 0 0 chr1 87174025 87174771 -155489582 - L1PA4 LINE L1 -1397 4749 4004 7555 28 1 0 chr1 87174771 87176160 -155488193 + L1PA4 LINE L1 4746 6147 -8 321 300 61 98 chr1 87176200 87176577 -155487776 + L1ME3A LINE L1 5687 6049 -121 2272 200 15 11 chr1 87176588 87177053 -155487300 + MLT1C LTR MaLR 1 467 0 1799 180 7 10 chr1 87177221 87177515 -155486838 - AluJb SINE Alu -19 293 1 245 298 61 38 chr1 87177855 87177986 -155486367 + L2 LINE L2 3180 3313 0 260 257 291 0 chr1 87178617 87178765 -155485588 - L2 LINE L2 0 3313 3123 22765 148 20 18 chr1 87178783 87180006 -155484347 + L1PA8A LINE L1 2 1221 -5240 186 103 0 0 chr1 87180006 87180035 -155484318 + (CAA)n Simple_repeat Simple_repeat 2 30 0 22765 148 20 18 chr1 87180035 87184271 -155480082 + L1PA8A LINE L1 1221 5538 -923 523 52 340 0 chr1 87184264 87184361 -155479992 + L1PA7 LINE L1 6024 6153 -1 * 4211 76 0 0 chr1 87184395 87184961 -155479392 + L1PA8A LINE L1 5791 6356 -90 21 36 0 0 chr1 87184972 87185000 -155479353 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr1 87189561 87189583 -155474770 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 220 359 15 38 chr1 87189738 87189809 -155474544 + MER5A DNA MER1_type 55 124 -65 2247 86 0 0 chr1 87189809 87190112 -155474241 - AluSg SINE Alu 0 303 1 220 359 15 38 chr1 87190112 87190170 -155474183 + MER5A DNA MER1_type 124 182 -7 1410 180 10 17 chr1 87192005 87192294 -155472059 - L1MC2 LINE L1 -11 6333 6047 386 296 8 8 chr1 87193591 87193723 -155470630 + (TA)n Simple_repeat Simple_repeat 2 133 0 545 185 56 0 chr1 87193796 87193939 -155470414 + L1PA16 LINE L1 6030 6178 0 708 251 128 28 chr1 87194340 87194699 -155469654 + L2 LINE L2 2915 3309 -4 575 313 95 17 chr1 87195594 87195888 -155468465 + LTR16A LTR ERVL 113 429 -21 289 278 160 18 chr1 87196961 87197130 -155467223 + MIR SINE MIR 56 248 -14 542 195 87 160 chr1 87197542 87197773 -155466580 + MIR SINE MIR 48 261 -1 333 266 0 0 chr1 87197935 87197999 -155466354 - L2 LINE L2 -1 3312 3249 26 64 0 0 chr1 87198382 87198429 -155465924 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr1 87198447 87198484 -155465869 + AT_rich Low_complexity Low_complexity 1 37 0 276 157 20 0 chr1 87199448 87199499 -155464854 - L1ME4a LINE L1 -81 6040 5989 30 27 0 0 chr1 87199683 87199720 -155464633 + AT_rich Low_complexity Low_complexity 1 37 0 492 313 71 42 chr1 87199785 87200121 -155464232 - L1M4 LINE L1 -1010 5136 4791 2474 89 0 0 chr1 87200329 87200631 -155463722 - AluSq SINE Alu -11 302 1 3310 162 55 47 chr1 87200737 87201551 -155462802 - L1MB5 LINE L1 -8 6166 5346 1797 269 105 21 chr1 87201956 87202633 -155461720 - L1ME LINE L1 -5325 745 12 361 339 9 0 chr1 87202723 87202832 -155461521 + L2 LINE L2 3197 3306 -7 403 313 188 36 chr1 87202931 87203424 -155460929 - HAL1b LINE L1 -659 1652 379 2239 201 9 0 chr1 87205423 87205845 -155458508 - MSTB LTR MaLR 0 426 1 8343 198 18 7 chr1 87205845 87207478 -155456875 - MSTB-int LTR MaLR 0 1651 1 2102 166 11 101 chr1 87207480 87207887 -155456466 - MSTB LTR MaLR -2 424 -18 1943 188 40 38 chr1 87207887 87208312 -155456041 + MSTB LTR MaLR 1 426 0 7883 191 61 3 chr1 87208312 87209872 -155454481 + MSTB-int LTR MaLR 1 1651 0 2391 171 24 9 chr1 87209872 87210292 -155454061 + MSTB LTR MaLR 1 426 0 2102 166 11 101 chr1 87210292 87210346 -155454007 - MSTB LTR MaLR -366 60 3 24 32 0 0 chr1 87210558 87210589 -155453764 + AT_rich Low_complexity Low_complexity 1 31 0 350 232 0 0 chr1 87211343 87211412 -155452941 - MIR SINE MIR -21 241 173 684 314 77 56 chr1 87212419 87213080 -155451273 - L2 LINE L2 0 3313 2637 922 63 0 16 chr1 87213224 87213351 -155451002 + L1PA8 LINE L1 6048 6172 0 489 34 0 0 chr1 87213776 87213835 -155450518 + (CA)n Simple_repeat Simple_repeat 2 60 0 256 301 88 35 chr1 87214757 87214870 -155449483 - L2 LINE L2 -15 3257 3139 235 136 0 0 chr1 87216672 87216716 -155447637 - L1ME4a LINE L1 -17 6104 6061 397 295 46 1 chr1 87216884 87217027 -155447326 - L1M4 LINE L1 -1978 4168 4013 1981 213 89 35 chr1 87217083 87217675 -155446678 - MLT1E2 LTR MaLR -2 624 1 1568 50 0 15 chr1 87217772 87217972 -155446381 - MER107 DNA MER1_type 0 197 1 297 325 17 25 chr1 87218027 87218147 -155446206 + MIR SINE MIR 76 194 -68 780 237 86 41 chr1 87218194 87218532 -155445821 - L1ME4a LINE L1 -225 5896 5544 23 0 0 0 chr1 87218886 87218909 -155445444 + AT_rich Low_complexity Low_complexity 1 23 0 394 304 40 34 chr1 87219888 87220036 -155444317 + MIR3 SINE MIR 58 206 -2 306 0 0 0 chr1 87220115 87220149 -155444204 + (T)n Simple_repeat Simple_repeat 1 34 0 1387 257 71 93 chr1 87220381 87221082 -155443271 - MER21B LTR ERV1 -154 709 24 345 333 41 0 chr1 87223027 87223150 -155441203 - L2 LINE L2 0 3313 3186 252 0 0 0 chr1 87223503 87223531 -155440822 + (A)n Simple_repeat Simple_repeat 1 28 0 2030 119 87 0 chr1 87224946 87225256 -155439097 + MER1B DNA MER1_type 1 337 0 789 218 76 10 chr1 87225764 87225961 -155438392 + MIR SINE MIR 53 262 0 517 307 68 5 chr1 87226001 87226193 -155438160 + MIR SINE MIR 6 209 -53 30 0 0 0 chr1 87226842 87226872 -155437481 + AT_rich Low_complexity Low_complexity 1 30 0 342 292 0 0 chr1 87227573 87227662 -155436691 + L1MC4 LINE L1 6615 6703 -1339 249 222 0 0 chr1 87227663 87227726 -155436627 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 239 174 0 0 chr1 87227728 87227774 -155436579 + L1MC4 LINE L1 6658 6703 -1339 1086 129 0 18 chr1 87227779 87227942 -155436411 - AluSg/x SINE Alu -18 294 135 445 307 260 14 chr1 87228161 87228650 -155435703 + L3 LINE CR1 969 1577 0 308 306 74 16 chr1 87229747 87229989 -155434364 - L1ME4a LINE L1 -12 6109 5854 23 0 0 0 chr1 87231239 87231262 -155433091 + AT_rich Low_complexity Low_complexity 1 23 0 604 313 101 16 chr1 87235194 87235571 -155428782 - MLT1I LTR MaLR 0 409 1 474 307 118 57 chr1 87236707 87236751 -155427602 - L1MC4a LINE L1 -747 5399 5359 2015 143 42 22 chr1 87236751 87237108 -155427245 - THE1B LTR MaLR 0 364 1 474 307 118 57 chr1 87237108 87237196 -155427157 - L1MC4a LINE L1 -787 5359 5278 2014 133 33 7 chr1 87237196 87237496 -155426857 - AluSx SINE Alu -4 308 1 474 307 118 57 chr1 87237496 87237922 -155426431 - L1MC4a LINE L1 -868 5278 5217 2300 117 48 14 chr1 87237922 87238274 -155426079 + THE1B LTR MaLR 1 364 0 474 307 118 57 chr1 87238274 87238586 -155425767 - L1MC4a LINE L1 -929 5217 4925 1911 133 182 6 chr1 87238637 87238999 -155425354 - MSTA LTR MaLR 0 428 3 240 154 0 0 chr1 87239011 87239050 -155425303 - LTR3b LTR ERVK -63 437 399 3068 101 42 0 chr1 87239050 87239475 -155424878 - LTR3b LTR ERVK -57 443 1 1938 182 40 11 chr1 87239734 87240113 -155424240 - MLT1B LTR MaLR 0 390 1 563 218 109 29 chr1 87240209 87240383 -155423970 - MER5A DNA MER1_type -1 188 1 1527 161 38 45 chr1 87240445 87240736 -155423617 - AluJo SINE Alu -23 289 1 4863 190 24 19 chr1 87243624 87245029 -155419324 + L1PA16 LINE L1 4125 5530 -636 842 183 50 162 chr1 87245029 87245389 -155418964 - MER51C LTR ERV1 0 640 329 3960 135 2 14 chr1 87245522 87246167 -155418186 + L1PA16 LINE L1 5529 6165 -1 222 242 137 11 chr1 87246479 87246574 -155417779 - MIR SINE MIR -43 219 113 6098 188 31 136 chr1 87246612 87246692 -155417661 + L1PA15-16 LINE L1 5 92 -6757 1931 147 16 38 chr1 87246692 87247060 -155417293 + THE1B LTR MaLR 5 364 0 6098 188 31 136 chr1 87247060 87248715 -155415638 + L1PA15-16 LINE L1 92 1558 -5291 782 259 5 5 chr1 87248706 87248899 -155415454 + L1PA16 LINE L1 1335 1527 -5322 * 13706 220 19 22 chr1 87249325 87254678 -155409675 + L1PA16 LINE L1 1445 6868 0 492 128 13 0 chr1 87255441 87255519 -155408834 - MADE1 DNA Mariner 0 80 2 2101 130 30 41 chr1 87256534 87256902 -155407451 + THE1B LTR MaLR 1 364 0 2022 145 0 0 chr1 87257510 87257800 -155406553 + AluSx SINE Alu 1 290 -22 255 31 0 0 chr1 87257803 87257835 -155406518 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 14134 29 10 0 chr1 87258098 87260552 -155403801 + L1PA4 LINE L1 3685 6152 -3 1510 164 52 58 chr1 87262067 87262432 -155401921 + MLT1A1 LTR MaLR 1 363 -2 356 259 104 7 chr1 87262571 87262706 -155401647 - MIR SINE MIR -5 257 110 467 290 39 13 chr1 87263069 87263123 -155401230 - MIR SINE MIR -3 259 208 1838 176 102 23 chr1 87263123 87263556 -155400797 + MLT1C LTR MaLR 1 467 0 467 290 39 13 chr1 87263556 87263656 -155400697 - MIR SINE MIR -54 208 101 2431 69 0 3 chr1 87263746 87264049 -155400304 - AluY SINE Alu -9 302 1 214 327 117 54 chr1 87264835 87265040 -155399313 + MIR SINE MIR 21 238 -24 553 307 62 45 chr1 87265129 87265578 -155398775 + L1ME3A LINE L1 5437 5893 -277 289 207 35 0 chr1 87266429 87266487 -155397866 + L2 LINE L2 3245 3304 -9 1071 289 104 19 chr1 87266489 87267112 -155397241 + L2 LINE L2 2603 3284 -29 870 145 0 0 chr1 87268641 87268772 -155395581 - FLAM_C SINE Alu -12 131 1 797 237 93 36 chr1 87268852 87269131 -155395222 - L1MC4 LINE L1 -169 7873 7579 3124 224 88 16 chr1 87269146 87270648 -155393705 - L1ME2 LINE L1 -2 6162 4548 23 54 0 0 chr1 87271389 87271426 -155392927 + AT_rich Low_complexity Low_complexity 1 37 0 1959 132 42 0 chr1 87271603 87271892 -155392461 - AluSx SINE Alu -11 301 1 25 0 0 0 chr1 87273513 87273538 -155390815 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 87273768 87273791 -155390562 + AT_rich Low_complexity Low_complexity 1 23 0 1884 248 35 44 chr1 87273854 87274441 -155389912 - L1MA9 LINE L1 -25 6266 5675 7319 42 0 0 chr1 87274441 87275669 -155388684 - L1PA5 LINE L1 -6 6148 4920 1884 248 35 44 chr1 87275669 87276440 -155387913 - L1MA9 LINE L1 -616 5675 4807 208 357 32 16 chr1 87276500 87276626 -155387727 - L3b LINE CR1 -121 1462 1335 659 241 166 33 chr1 87276682 87276923 -155387430 + L2 LINE L2 2268 2540 -774 1036 199 176 4 chr1 87276930 87277192 -155387161 + L1MC3 LINE L1 6707 7013 -772 180 77 0 0 chr1 87277192 87277218 -155387135 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1724 221 8 34 chr1 87277647 87277746 -155386607 + MLT1A2 LTR MaLR 1 101 -273 597 77 0 0 chr1 87277746 87277824 -155386529 - MADE1 DNA Mariner -2 78 1 1724 221 8 34 chr1 87277824 87278108 -155386245 + MLT1A2 LTR MaLR 101 374 0 1708 240 44 14 chr1 87279028 87279591 -155384762 + L1M4 LINE L1 4181 4760 -1386 887 243 0 0 chr1 87279613 87279786 -155384567 + MER45A DNA AcHobo 6 178 0 1534 237 65 17 chr1 87279790 87280267 -155384086 + L1M4 LINE L1 4826 5325 -821 2188 147 15 42 chr1 87280495 87280896 -155383457 - MLT1B LTR MaLR 0 390 1 506 251 79 42 chr1 87281139 87281354 -155382999 + MLT1J1 LTR MaLR 172 394 -52 337 209 9 61 chr1 87281614 87281729 -155382624 - MIR SINE MIR -104 158 50 375 290 37 0 chr1 87282305 87282412 -155381941 - L2 LINE L2 -1 3312 3202 201 74 0 0 chr1 87283610 87283637 -155380716 + (TCCA)n Simple_repeat Simple_repeat 3 29 0 527 338 64 39 chr1 87284043 87284233 -155380120 + L2 LINE L2 2857 3056 -257 1806 184 55 3 chr1 87284233 87284580 -155379773 - MLT1A1 LTR MaLR 0 365 1 527 338 64 39 chr1 87284580 87284623 -155379730 + L2 LINE L2 3056 3096 -217 736 290 97 62 chr1 87285607 87286010 -155378343 - LTR33 LTR ERVL -86 435 19 420 230 20 0 chr1 87286429 87286529 -155377824 - L1MC4 LINE L1 -1481 6561 6460 708 260 76 98 chr1 87287011 87287461 -155376892 - MLT1J LTR MaLR -31 480 41 1778 141 37 109 chr1 87287585 87287960 -155376393 + MER7A DNA MER2_type 1 346 0 302 284 16 39 chr1 87288715 87288842 -155375511 + LTR16C LTR ERVL 368 491 0 407 250 116 0 chr1 87288985 87289097 -155375256 - Charlie8 DNA MER1_type -2167 250 126 301 312 54 9 chr1 87289359 87289580 -155374773 + L1MB5 LINE L1 4543 4773 -1373 4102 118 9 23 chr1 87289583 87290226 -155374127 + MER51A LTR ERV1 1 634 0 3319 172 89 21 chr1 87290227 87290266 -155374087 + L1MB5 LINE L1 5430 5465 -709 315 0 0 0 chr1 87290266 87290301 -155374052 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3319 172 89 21 chr1 87290301 87290959 -155373394 + L1MB5 LINE L1 5465 6174 0 196 377 25 25 chr1 87291439 87291598 -155372755 + L2 LINE L2 2716 2874 -440 2168 190 20 15 chr1 87291681 87292139 -155372214 - MER65C LTR ERV1 -1 460 1 1896 143 0 0 chr1 87292314 87292587 -155371766 + AluSx SINE Alu 1 273 -39 305 251 106 90 chr1 87292951 87293206 -155371147 + L1MEd LINE L1 844 1102 -5017 1236 198 4 16 chr1 87293784 87294031 -155370322 - AluJb SINE Alu -8 304 61 490 96 0 60 chr1 87294529 87294612 -155369741 - MADE1 DNA Mariner -1 79 2 358 318 63 53 chr1 87294924 87295226 -155369127 + L1MEd LINE L1 2790 3094 -3035 26 0 0 0 chr1 87295396 87295422 -155368931 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 87295518 87295539 -155368814 + AT_rich Low_complexity Low_complexity 1 21 0 226 289 60 12 chr1 87296686 87296769 -155367584 + MIR SINE MIR 90 176 -86 22 70 0 0 chr1 87296770 87296813 -155367540 + AT_rich Low_complexity Low_complexity 1 43 0 351 356 87 33 chr1 87297282 87297616 -155366737 - L2 LINE L2 -778 2536 2185 331 349 40 26 chr1 87298739 87298800 -155365553 + L2 LINE L2 3117 3176 -96 207 0 0 0 chr1 87298800 87298823 -155365530 + (TA)n Simple_repeat Simple_repeat 2 24 0 331 349 40 26 chr1 87298823 87298913 -155365440 + L2 LINE L2 3176 3270 -2 22 0 0 0 chr1 87299122 87299144 -155365209 + AT_rich Low_complexity Low_complexity 1 22 0 1861 190 23 3 chr1 87299562 87299904 -155364449 + MLT1A1 LTR MaLR 13 361 -4 229 83 62 0 chr1 87299954 87300002 -155364351 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1601 185 0 33 chr1 87300048 87300350 -155364003 - AluJo SINE Alu -14 298 7 2000 105 44 17 chr1 87300619 87300914 -155363439 + AluSq SINE Alu 3 305 -8 1476 183 3 47 chr1 87300918 87301218 -155363135 + AluJb SINE Alu 1 287 -25 540 312 61 19 chr1 87301589 87301852 -155362501 + L2 LINE L2 2263 2536 -778 207 306 82 12 chr1 87302261 87302346 -155362007 + L3 LINE CR1 1303 1393 -184 26959 91 23 9 chr1 87302746 87308774 -155355579 + L1PA6 LINE L1 10 6154 0 2496 276 60 1 chr1 87308776 87309526 -155354827 - L1ME3A LINE L1 -11 6159 5366 862 296 68 12 chr1 87309547 87310061 -155354292 - L1ME3A LINE L1 -841 5305 4763 1716 220 9 0 chr1 87310064 87310400 -155353953 - MLT1A1 LTR MaLR 0 365 27 2179 186 28 16 chr1 87310403 87310839 -155353514 - L1 LINE L1 -1801 4345 3905 * 4792 180 39 3 chr1 87310836 87312526 -155351827 + L1PB4 LINE L1 4394 6142 -14 1061 275 211 0 chr1 87312632 87313101 -155351252 + LTR41 LTR ERVL 5 572 -201 4148 217 70 7 chr1 87313194 87314230 -155350123 - L1MC4a LINE L1 -2 7806 6706 596 221 78 19 chr1 87314240 87314394 -155349959 + MLT1E1 LTR MaLR 492 654 0 298 339 80 31 chr1 87314399 87314623 -155349730 + L2 LINE L2 2695 2929 -385 245 170 0 0 chr1 87315135 87315182 -155349171 + L1MD3 LINE L1 7097 7143 -852 2289 122 10 13 chr1 87315624 87316009 -155348344 - L1MA4 LINE L1 -6 6294 5911 2104 117 0 0 chr1 87316323 87316614 -155347739 - AluSx SINE Alu -21 291 1 3064 134 41 19 chr1 87316833 87317413 -155346940 - L1MA4A LINE L1 -1 6302 5710 1393 194 26 111 chr1 87317500 87317530 -155346823 - L1ME LINE L1 -1833 4296 4265 1549 264 90 48 chr1 87317530 87318099 -155346254 + MLT1E LTR MaLR 1 593 0 1393 194 26 111 chr1 87318099 87318528 -155345825 - L1ME LINE L1 -1864 4265 3876 1838 240 28 58 chr1 87318531 87318997 -155345356 - MLT2B3 LTR ERVL 0 554 103 1735 153 53 13 chr1 87319038 87319338 -155345015 - AluSx SINE Alu 0 312 1 1992 264 25 33 chr1 87319338 87320069 -155344284 - L1 LINE L1 -3213 2933 2209 1315 278 113 31 chr1 87320123 87320990 -155343363 - L1ME LINE L1 -2386 3743 2806 342 305 86 59 chr1 87321102 87321618 -155342735 - L1ME LINE L1 -5011 1108 576 1570 143 4 12 chr1 87321733 87321992 -155342361 - L1PB3 LINE L1 -3 6151 5895 965 228 5 0 chr1 87322497 87322681 -155341672 + MER58A DNA MER1_type 39 223 -1 4599 218 67 16 chr1 87326738 87327973 -155336380 + Charlie1a DNA MER1_type 3 1300 -155 1900 252 36 41 chr1 87328007 87328595 -155335758 + L1M3e LINE L1 466 1050 -6439 3147 254 70 45 chr1 87328620 87330028 -155334325 + L1M3e LINE L1 1996 3438 -4127 307 182 0 0 chr1 87330029 87330084 -155334269 + L1MC4 LINE L1 6649 6703 -1339 802 155 19 0 chr1 87330125 87330280 -155334073 + Charlie1a DNA MER1_type 1294 1451 -4 406 285 45 67 chr1 87330938 87331117 -155333236 + MIR SINE MIR 45 219 -43 395 336 41 7 chr1 87331229 87331375 -155332978 - L2 LINE L2 0 3272 3122 860 293 104 14 chr1 87331376 87331789 -155332564 + HAL1b LINE L1 819 1268 -80 354 232 12 0 chr1 87332274 87332356 -155331997 - L1MD2 LINE L1 -18 6341 6259 3150 221 50 9 chr1 87332562 87333436 -155330917 - L1MD2 LINE L1 -50 6510 5593 2044 258 94 53 chr1 87333472 87334789 -155329564 - L1MD2 LINE L1 -4991 1549 11 236 235 15 29 chr1 87334965 87335033 -155329320 + MIR SINE MIR 86 152 -110 183 162 0 0 chr1 87336218 87336255 -155328098 + (TG)n Simple_repeat Simple_repeat 1 37 0 306 325 65 24 chr1 87337189 87337312 -155327041 + L2 LINE L2 3115 3242 -30 924 145 51 145 chr1 87337387 87337642 -155326711 + AluJb SINE Alu 82 312 0 758 243 80 131 chr1 87338400 87338988 -155325365 - LTR26 LTR ERV1 0 603 67 2066 151 51 42 chr1 87339997 87340429 -155323924 + LTR23 LTR ERV1 2 437 0 21 36 0 0 chr1 87341091 87341119 -155323234 + AT_rich Low_complexity Low_complexity 1 28 0 2285 130 13 16 chr1 87341458 87341834 -155322519 - THE1C LTR MaLR 0 375 1 9857 124 39 5 chr1 87341834 87343362 -155320991 - THE1C-int LTR MaLR 0 1580 1 1679 132 66 14 chr1 87343362 87343650 -155320703 - THE1C LTR MaLR 0 375 73 530 317 132 11 chr1 87343663 87343950 -155320403 + L2 LINE L2 2845 3166 -147 21 0 0 0 chr1 87344037 87344058 -155320295 + AT_rich Low_complexity Low_complexity 1 21 0 235 387 43 30 chr1 87344355 87344590 -155319763 - L2 LINE L2 -556 2758 2521 21 0 0 0 chr1 87344716 87344737 -155319616 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr1 87345044 87345082 -155319271 + AT_rich Low_complexity Low_complexity 1 38 0 1530 169 10 36 chr1 87345876 87345927 -155318426 - L1MB1 LINE L1 -28 6161 6110 803 179 105 11 chr1 87345927 87346117 -155318236 - MER6B DNA MER2_type 0 210 3 3175 135 37 4 chr1 87346127 87346637 -155317716 - MER1A DNA MER1_type 0 527 1 1530 169 10 36 chr1 87346637 87346881 -155317472 - L1MB1 LINE L1 -88 6101 5863 2081 101 14 3 chr1 87347137 87347425 -155316928 - AluSg SINE Alu -19 291 1 996 281 67 26 chr1 87347633 87348099 -155316254 - L1ME3A LINE L1 -278 5892 5408 29 60 0 0 chr1 87348105 87348155 -155316198 + AT_rich Low_complexity Low_complexity 1 50 0 24 67 0 0 chr1 87349452 87349497 -155314856 + AT_rich Low_complexity Low_complexity 1 45 0 251 261 78 52 chr1 87350807 87350922 -155313431 - MLT1J LTR MaLR -80 431 314 1632 196 36 9 chr1 87350929 87351266 -155313087 + MLT1A1 LTR MaLR 19 364 -1 21 36 0 0 chr1 87351553 87351581 -155312772 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 87351902 87351930 -155312423 + AT_rich Low_complexity Low_complexity 1 28 0 1547 250 135 52 chr1 87351944 87353036 -155311317 - L1MC5 LINE L1 -46 7915 6734 441 313 37 37 chr1 87353039 87353253 -155311100 - L1MC4a LINE L1 -1119 6689 6476 341 283 35 0 chr1 87353850 87353963 -155310390 - L1MB1 LINE L1 -2083 5725 5609 445 236 65 8 chr1 87354208 87354331 -155310022 + L2 LINE L2 3180 3309 -4 513 230 26 40 chr1 87354679 87354831 -155309522 + MIR SINE MIR 71 220 -42 1385 196 51 27 chr1 87355858 87356120 -155308233 + MER2 DNA MER2_type 1 274 -70 1851 128 28 10 chr1 87356120 87356409 -155307944 - AluSq SINE Alu -19 294 1 1385 196 51 27 chr1 87356409 87356482 -155307871 + MER2 DNA MER2_type 274 344 0 285 269 45 96 chr1 87357040 87357196 -155307157 - L2 LINE L2 -556 2758 2611 * 518 272 146 19 chr1 87357190 87357396 -155306957 - MIR SINE MIR 0 262 31 298 276 40 63 chr1 87359380 87359554 -155304799 - MLT1K LTR MaLR -5 583 414 221 150 0 0 chr1 87359555 87359595 -155304758 + (TC)n Simple_repeat Simple_repeat 1 40 0 544 245 64 21 chr1 87359732 87359920 -155304433 - L1ME3A LINE L1 -7 6163 5968 3459 150 2 4 chr1 87360566 87361094 -155303259 - MER1A DNA MER1_type 0 527 1 371 208 0 9 chr1 87363336 87363442 -155300911 + GA-rich Low_complexity Low_complexity 3 107 0 5625 226 16 10 chr1 87365366 87366976 -155297377 - L1PBa LINE L1 -2440 4422 2803 5131 237 41 36 chr1 87366985 87368853 -155295500 - L1PBa LINE L1 -5220 1643 648 3293 186 51 8 chr1 87368853 87369557 -155294796 - MER50 LTR ERV1 0 734 1 5131 237 41 36 chr1 87369557 87370207 -155294146 - L1PBa LINE L1 -6215 648 3 612 192 39 6 chr1 87370242 87370398 -155293955 - L1ME3A LINE L1 -280 5886 5726 531 327 65 35 chr1 87370389 87370476 -155293877 + L1ME3A LINE L1 5586 5669 -501 * 396 0 0 0 chr1 87370476 87370520 -155293833 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 234 0 0 0 chr1 87370522 87370548 -155293805 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 450 0 0 0 chr1 87370547 87370597 -155293756 + (TA)n Simple_repeat Simple_repeat 1 50 0 531 327 65 35 chr1 87370548 87370986 -155293367 + L1ME3A LINE L1 5669 6079 -91 207 162 0 0 chr1 87371016 87371053 -155293300 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 346 311 137 6 chr1 87371116 87371277 -155293076 + MIR SINE MIR 25 206 -56 3037 168 5 53 chr1 87372287 87372869 -155291484 - MLT2B3 LTR ERVL 0 554 1 502 254 61 117 chr1 87373321 87373844 -155290509 - LTR33A LTR ERVL -23 500 7 746 191 0 8 chr1 87373946 87374077 -155290276 + FLAM_C SINE Alu 2 131 -2 21 0 0 0 chr1 87374084 87374105 -155290248 + AT_rich Low_complexity Low_complexity 1 21 0 1041 70 0 0 chr1 87375707 87375849 -155288504 - L1PA6 LINE L1 -363 5791 5650 2677 70 6 8 chr1 87375849 87376203 -155288150 + L1PA6 LINE L1 5795 6150 -4 451 332 19 48 chr1 87376906 87377114 -155287239 + MIR3 SINE MIR 6 207 -1 391 291 70 19 chr1 87378562 87378720 -155285633 - MIR SINE MIR -44 218 53 384 246 82 38 chr1 87379811 87379994 -155284359 - L1ME3A LINE L1 -117 6053 5863 24 0 0 0 chr1 87381346 87381370 -155282983 + AT_rich Low_complexity Low_complexity 1 24 0 2339 97 0 0 chr1 87381432 87381763 -155282590 + AluSc SINE Alu 1 331 0 1274 212 48 15 chr1 87382522 87382852 -155281501 - MER58B DNA MER1_type 0 341 1 222 128 0 0 chr1 87384760 87384799 -155279554 + (TG)n Simple_repeat Simple_repeat 1 39 0 707 238 53 45 chr1 87385222 87385466 -155278887 + MLT1A2 LTR MaLR 1 246 -128 1320 252 119 89 chr1 87385570 87386744 -155277609 - L2 LINE L2 -263 3050 1806 396 296 80 45 chr1 87386786 87386940 -155277413 + MIR SINE MIR 46 210 -52 1234 204 12 107 chr1 87386940 87387343 -155277010 - MLT1A1 LTR MaLR 0 365 1 396 296 80 45 chr1 87387343 87387387 -155276966 + MIR SINE MIR 210 251 -11 237 107 0 71 chr1 87387496 87387552 -155276801 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 2170 132 0 0 chr1 87388494 87388825 -155275528 - AluSx SINE Alu 0 331 1 5290 105 28 63 chr1 87390063 87391008 -155273345 - L1PA15 LINE L1 -1 6164 5254 9352 206 12 3 chr1 87391110 87393224 -155271129 - L1PA15 LINE L1 -1186 4960 2827 4938 41 0 0 chr1 87393245 87393829 -155270524 - L1PA5 LINE L1 -11 6143 5560 2867 116 0 0 chr1 87393832 87394256 -155270097 - L1PA15 LINE L1 -5712 434 11 9123 225 28 39 chr1 87394263 87397788 -155266565 - L1PA13 LINE L1 -3301 3496 1 21 0 0 0 chr1 87399291 87399312 -155265041 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr1 87399754 87399788 -155264565 + AT_rich Low_complexity Low_complexity 1 34 0 1741 98 0 0 chr1 87400701 87400950 -155263403 + AluSx SINE Alu 58 306 0 199 315 46 56 chr1 87400967 87401075 -155263278 + MIR SINE MIR 46 152 -110 790 222 0 6 chr1 87401076 87401247 -155263106 + L1 LINE L1 5 174 -6994 1867 251 48 17 chr1 87401247 87401773 -155262580 + L1 LINE L1 1238 1779 -5389 290 119 0 0 chr1 87401786 87401828 -155262525 + L1 LINE L1 3878 3919 -3248 * 1356 123 30 4 chr1 87401825 87402061 -155262292 + L1MA5A LINE L1 6033 6274 -23 502 164 10 0 chr1 87402066 87402170 -155262183 + L1 LINE L1 3942 4046 -3121 189 74 0 0 chr1 87402208 87402235 -155262118 + (TTATA)n Simple_repeat Simple_repeat 5 31 0 44 88 0 0 chr1 87402235 87402349 -155262004 + AT_rich Low_complexity Low_complexity 1 114 0 5009 224 31 12 chr1 87402359 87403807 -155260546 + L1 LINE L1 4058 5533 -1634 338 127 16 0 chr1 87403914 87403977 -155260376 + L1MA9 LINE L1 5421 5484 -807 2649 203 38 44 chr1 87403979 87404223 -155260130 + L1MA9 LINE L1 5553 5797 -515 261 0 0 0 chr1 87404223 87404252 -155260101 + (CA)n Simple_repeat Simple_repeat 1 29 0 2649 203 38 44 chr1 87404252 87404700 -155259653 + L1MA9 LINE L1 5797 6243 -69 2385 96 0 3 chr1 87404700 87405001 -155259352 + AluSp SINE Alu 1 300 -13 2649 203 38 44 chr1 87405001 87405041 -155259312 + L1MA9 LINE L1 6243 6282 -30 180 158 0 0 chr1 87405167 87405205 -155259148 + CT-rich Low_complexity Low_complexity 3 40 0 1054 200 4 0 chr1 87405326 87405556 -155258797 - L1MD3 LINE L1 -5 7990 7760 297 330 25 17 chr1 87406022 87406140 -155258213 + MIR3 SINE MIR 52 170 -38 220 276 38 48 chr1 87406178 87406283 -155258070 - MIR SINE MIR -84 124 21 300 282 32 65 chr1 87409657 87409781 -155254572 + L2 LINE L2 3194 3313 0 495 246 124 142 chr1 87409845 87410451 -155253902 - MLT1G1 LTR MaLR 0 595 1 1577 207 3 7 chr1 87411040 87411335 -155253018 + AluJb SINE Alu 11 304 -8 214 204 20 0 chr1 87411696 87411745 -155252608 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 2201 162 36 7 chr1 87411749 87412163 -155252190 - MSTB LTR MaLR 0 426 1 23 54 0 0 chr1 87412236 87412273 -155252080 + AT_rich Low_complexity Low_complexity 1 37 0 336 225 0 0 chr1 87412552 87412623 -155251730 - MIR SINE MIR -6 256 186 202 204 185 0 chr1 87412639 87412693 -155251660 - L2 LINE L2 -3 3269 3206 219 361 52 0 chr1 87413322 87413419 -155250934 + L2 LINE L2 3212 3313 0 25 65 0 0 chr1 87415949 87415995 -155248358 + AT_rich Low_complexity Low_complexity 1 46 0 262 294 34 103 chr1 87416512 87416658 -155247695 + L2 LINE L2 3136 3271 -1 552 220 17 28 chr1 87418246 87418423 -155245930 - Charlie2 DNA MER1_type -34 2828 2654 250 113 132 0 chr1 87418437 87418490 -155245863 - MLT2B1 LTR ERVL -13 507 448 2127 239 19 44 chr1 87418534 87418700 -155245653 - MLT2B3 LTR ERVL -40 514 345 1286 188 84 59 chr1 87418700 87419056 -155245297 + MLT1A1 LTR MaLR 1 365 0 2127 239 19 44 chr1 87419056 87419416 -155244937 - MLT2B3 LTR ERVL -209 345 1 1822 143 3 21 chr1 87419494 87419780 -155244573 - AluSx SINE Alu -30 282 2 675 222 129 34 chr1 87419784 87420163 -155244190 - Charlie2 DNA MER1_type -259 2603 2189 557 296 35 15 chr1 87420142 87420345 -155244008 - Charlie2 DNA MER1_type -2537 245 39 * 461 266 80 18 chr1 87421035 87421148 -155243205 + MIR SINE MIR 25 144 -118 1575 220 131 59 chr1 87421961 87422696 -155241657 + LTR1B LTR ERV1 1 983 -37 510 293 87 67 chr1 87422843 87423338 -155241015 - L1MEc LINE L1 -5835 561 57 418 174 109 58 chr1 87423344 87423482 -155240871 + MER5C DNA MER1_type 136 280 -44 428 232 261 14 chr1 87423495 87423637 -155240716 - MER5A DNA MER1_type 0 189 13 21 0 0 0 chr1 87424211 87424232 -155240121 + AT_rich Low_complexity Low_complexity 1 21 0 727 61 18 0 chr1 87425148 87425262 -155239091 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 453 249 89 0 chr1 87425402 87425569 -155238784 - MIR SINE MIR 0 262 74 188 262 0 0 chr1 87425784 87425826 -155238527 - L2 LINE L2 -16 3297 3256 771 228 21 21 chr1 87425881 87426070 -155238283 - L1PB4 LINE L1 -2 6154 5966 391 359 14 14 chr1 87426082 87426224 -155238129 - MIR SINE MIR -111 151 10 2345 95 0 7 chr1 87428863 87429169 -155235184 - AluY SINE Alu -7 304 1 318 36 54 0 chr1 87429365 87429421 -155234932 + (CA)n Simple_repeat Simple_repeat 2 60 0 256 191 44 88 chr1 87429476 87429544 -155234809 - MSTB LTR MaLR -242 184 120 801 315 155 15 chr1 87429559 87429953 -155234400 - L2 LINE L2 0 3313 2865 * 857 294 149 36 chr1 87429951 87430195 -155234158 - L2 LINE L2 -626 2688 2473 2281 176 16 28 chr1 87430195 87430626 -155233727 - MSTB LTR MaLR 0 426 1 857 294 149 36 chr1 87430626 87430933 -155233420 - L2 LINE L2 -841 2473 2075 8893 103 1 3 chr1 87432215 87433420 -155230933 + THE1B-int LTR MaLR 379 1580 0 2261 137 5 30 chr1 87433420 87433793 -155230560 + THE1B LTR MaLR 1 364 0 371 315 110 16 chr1 87433797 87434122 -155230231 - MLT1J2 LTR MaLR -56 394 63 1581 94 21 9 chr1 87434193 87434426 -155229927 + AluY SINE Alu 76 311 0 860 101 7 47 chr1 87434518 87434667 -155229686 + L1PA16 LINE L1 6024 6166 0 337 345 60 0 chr1 87435577 87435693 -155228660 - L2 LINE L2 0 3272 3150 241 333 14 0 chr1 87435921 87435990 -155228363 + L2 LINE L2 3203 3272 0 35 41 0 0 chr1 87438887 87438936 -155225417 + AT_rich Low_complexity Low_complexity 1 49 0 201 154 0 0 chr1 87439110 87439149 -155225204 + (CA)n Simple_repeat Simple_repeat 2 40 0 634 346 60 10 chr1 87439213 87439629 -155224724 - L1ME3A LINE L1 -235 5935 5499 191 119 0 71 chr1 87439737 87439779 -155224574 - L2 LINE L2 0 3313 3275 791 204 74 11 chr1 87439786 87439962 -155224391 - LTR32 LTR ERVL -5 466 280 289 159 174 14 chr1 87439980 87440049 -155224304 - LTR32 LTR ERVL -377 94 15 * 339 164 27 68 chr1 87440033 87440106 -155224247 - LTR32 LTR ERVL -387 84 15 518 277 71 49 chr1 87440106 87440330 -155224023 - L2 LINE L2 -36 3277 3049 878 129 38 0 chr1 87440339 87440471 -155223882 - MSTA LTR MaLR -1 427 291 492 316 88 31 chr1 87440487 87441043 -155223310 - L1ME3A LINE L1 -1870 4276 3689 512 108 118 0 chr1 87443987 87444080 -155220273 - MER53 DNA DNA -84 105 2 21 36 0 0 chr1 87444754 87444782 -155219571 + AT_rich Low_complexity Low_complexity 1 28 0 180 373 0 0 chr1 87446285 87446344 -155218009 + L2 LINE L2 2424 2482 -832 2547 106 14 0 chr1 87446354 87446711 -155217642 + THE1B LTR MaLR 3 364 0 10205 105 33 37 chr1 87446711 87448292 -155216061 + THE1B-int LTR MaLR 1 1574 -6 2485 140 0 0 chr1 87448297 87448661 -155215692 + THE1B LTR MaLR 1 364 0 247 328 85 30 chr1 87448662 87448897 -155215456 + L2 LINE L2 2487 2734 -580 1057 257 139 8 chr1 87449568 87449934 -155214419 + L1MD2 LINE L1 5725 6138 -221 2217 109 7 0 chr1 87450065 87450368 -155213985 + AluSc SINE Alu 1 305 -4 651 347 48 39 chr1 87450684 87451323 -155213030 - L2 LINE L2 -947 2367 1723 3484 286 83 28 chr1 87451915 87453990 -155210363 + L1M4 LINE L1 2140 4328 -1818 283 102 61 0 chr1 87453990 87454039 -155210314 + L1MC3 LINE L1 7049 7100 -685 255 263 0 0 chr1 87454039 87454096 -155210257 + MLT1F1 LTR MaLR 69 125 -442 333 100 0 0 chr1 87454288 87454338 -155210015 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 301 327 0 0 chr1 87455435 87455536 -155208817 + MIR SINE MIR 137 237 -25 2146 114 3 3 chr1 87455539 87455846 -155208507 - AluSc SINE Alu -2 307 1 24 0 0 0 chr1 87455854 87455878 -155208475 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr1 87456012 87456039 -155208314 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr1 87458420 87458455 -155205898 + AT_rich Low_complexity Low_complexity 1 35 0 314 327 0 9 chr1 87458766 87458876 -155205477 - MIR SINE MIR -70 192 84 189 319 89 37 chr1 87458943 87459078 -155205275 - MIR3 SINE MIR -62 146 5 3532 153 20 0 chr1 87459553 87460156 -155204197 + L1PA16 LINE L1 5259 5873 -293 367 280 42 0 chr1 87460751 87460869 -155203484 - MIR SINE MIR -75 187 65 717 222 113 120 chr1 87461549 87462017 -155202336 - MER4C LTR ERV1 0 465 1 1583 145 82 0 chr1 87462150 87462419 -155201934 - AluSx SINE Alu -21 291 1 378 202 4 164 chr1 87463273 87463374 -155200979 - L1M3 LINE L1 -699 5472 5431 1962 107 32 4 chr1 87463374 87463654 -155200699 - AluSq SINE Alu -25 288 1 378 202 4 164 chr1 87463654 87463771 -155200582 - L1M3 LINE L1 -740 5431 5297 611 288 71 94 chr1 87463797 87464221 -155200132 + REP3 LTR ERV 102 515 -47 2248 125 0 0 chr1 87464538 87464841 -155199512 - AluSx SINE Alu -9 303 1 214 186 0 0 chr1 87465240 87465283 -155199070 + (TA)n Simple_repeat Simple_repeat 2 44 0 318 184 8 0 chr1 87466384 87466454 -155197899 - L1PA16 LINE L1 -12 6144 6073 242 409 25 19 chr1 87467193 87467352 -155197001 + MIR3 SINE MIR 35 194 -14 201 182 0 0 chr1 87468331 87468364 -155195989 + (TA)n Simple_repeat Simple_repeat 1 33 0 389 43 0 0 chr1 87468571 87468618 -155195735 + L1P LINE L1 2315 2361 -3785 2216 71 0 0 chr1 87468619 87468948 -155195405 + AluY SINE Alu 1 329 0 23 54 0 0 chr1 87469804 87469841 -155194512 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 87471955 87471978 -155192375 + AT_rich Low_complexity Low_complexity 1 23 0 963 183 25 50 chr1 87472224 87472464 -155191889 - L1MA9 LINE L1 0 6312 6079 528 248 28 0 chr1 87472481 87472622 -155191731 - L1ME3A LINE L1 -5 6165 6021 488 250 20 139 chr1 87472962 87473206 -155191147 - MIR SINE MIR -44 218 4 1190 159 9 47 chr1 87473459 87473691 -155190662 - MSTB LTR MaLR -202 224 2 26 0 0 0 chr1 87474607 87474633 -155189720 + AT_rich Low_complexity Low_complexity 1 26 0 245 309 0 0 chr1 87477160 87477215 -155187138 + L2 LINE L2 355 409 -2905 181 255 0 20 chr1 87478032 87478083 -155186270 + L2 LINE L2 1384 1433 -1881 195 318 103 16 chr1 87478196 87478322 -155186031 - MIR SINE MIR -61 201 65 24 32 0 0 chr1 87478435 87478466 -155185887 + AT_rich Low_complexity Low_complexity 1 31 0 1946 126 0 0 chr1 87479265 87479527 -155184826 + AluSc SINE Alu 1 262 -47 285 51 0 0 chr1 87479527 87479566 -155184787 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 230 229 0 0 chr1 87480119 87480167 -155184186 + (TG)n Simple_repeat Simple_repeat 1 48 0 294 143 0 0 chr1 87480321 87480384 -155183969 + (TA)n Simple_repeat Simple_repeat 1 63 0 269 197 0 0 chr1 87480415 87480481 -155183872 + (TA)n Simple_repeat Simple_repeat 2 67 0 249 155 0 0 chr1 87480508 87480566 -155183787 + (TA)n Simple_repeat Simple_repeat 1 58 0 270 0 0 0 chr1 87482176 87482206 -155182147 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 2905 9 0 0 chr1 87482281 87482599 -155181754 - AluYb8 SINE Alu 0 318 1 24 53 0 0 chr1 87485540 87485578 -155178775 + AT_rich Low_complexity Low_complexity 1 38 0 3208 124 2 2 chr1 87486364 87486849 -155177504 - L1M1 LINE L1 -483 5819 5335 4946 153 36 15 chr1 87486858 87488123 -155176230 - L1M1 LINE L1 -3478 4087 2798 25 0 0 0 chr1 87488166 87488191 -155176162 + AT_rich Low_complexity Low_complexity 1 25 0 333 258 0 11 chr1 87488191 87488284 -155176069 - L1ME3A LINE L1 -200 5970 5879 546 182 41 0 chr1 87488314 87488435 -155175918 - L1PA6 LINE L1 -2 6152 6027 1439 152 0 8 chr1 87488435 87488676 -155175677 - L1M1 LINE L1 -5286 2279 2039 3904 208 85 56 chr1 87488687 87489636 -155174717 + L1PA12 LINE L1 10 986 -6595 3850 129 61 6 chr1 87490338 87491007 -155173346 + L1M1 LINE L1 1773 2478 -5087 485 199 12 48 chr1 87491017 87491183 -155173170 + LTR37A LTR ERV1 235 394 -32 1555 202 3 0 chr1 87491190 87491496 -155172857 - AluSx SINE Alu 0 307 1 223 171 0 0 chr1 87491818 87491859 -155172494 + (CAATT)n Simple_repeat Simple_repeat 3 43 0 26 0 0 0 chr1 87491897 87491923 -155172430 + AT_rich Low_complexity Low_complexity 1 26 0 343 230 35 11 chr1 87492487 87492574 -155171779 - MLT1A1 LTR MaLR -4 361 273 2170 116 35 30 chr1 87492574 87492708 -155171645 - L1PB1 LINE L1 -43 6108 5976 2490 72 0 0 chr1 87492708 87493013 -155171340 - AluSc SINE Alu -4 305 1 2170 116 35 30 chr1 87493013 87493249 -155171104 - L1PB1 LINE L1 -175 5976 5736 1555 78 0 0 chr1 87493247 87493451 -155170902 + L1PB1 LINE L1 5521 5724 -427 * 353 280 48 70 chr1 87494038 87494224 -155170129 + MIR SINE MIR 2 183 -79 24 32 0 0 chr1 87494363 87494394 -155169959 + AT_rich Low_complexity Low_complexity 1 31 0 372 376 75 24 chr1 87494463 87494758 -155169595 - L2 LINE L2 -639 2675 2366 436 277 68 0 chr1 87494776 87494924 -155169429 - L1ME2 LINE L1 -9 6155 5998 710 247 60 25 chr1 87494961 87495409 -155168944 - L1ME2 LINE L1 -706 5468 5003 1402 199 85 82 chr1 87495409 87495797 -155168556 + MSTD LTR MaLR 1 389 -7 2167 258 72 38 chr1 87495802 87496909 -155167444 - L1ME2 LINE L1 -1139 5007 3863 938 226 69 58 chr1 87496929 87497203 -155167150 + MLT1B LTR MaLR 114 390 0 314 294 108 95 chr1 87497290 87497783 -155166570 - L2 LINE L2 0 3313 2815 437 277 58 15 chr1 87498153 87498290 -155166063 + L2 LINE L2 1171 1313 -2001 869 278 24 5 chr1 87498296 87498505 -155165848 + MER58A DNA MER1_type 12 224 0 312 314 58 32 chr1 87498505 87498693 -155165660 + L2 LINE L2 1304 1496 -1818 1391 291 150 66 chr1 87498782 87499777 -155164576 + L2 LINE L2 1711 2788 -526 1173 259 96 32 chr1 87499790 87500256 -155164097 - LTR33 LTR ERVL -13 508 1 333 323 197 19 chr1 87500256 87500663 -155163690 + L2 LINE L2 2790 3280 -33 878 241 25 0 chr1 87500668 87500871 -155163482 + MER82 DNA MER2_type 2 209 -444 21 0 0 0 chr1 87500892 87500913 -155163440 + AT_rich Low_complexity Low_complexity 1 21 0 2059 227 45 9 chr1 87501154 87501594 -155162759 + MER82 DNA MER2_type 198 653 0 2354 114 14 30 chr1 87502555 87502922 -155161431 + THE1B LTR MaLR 4 364 0 8002 106 3 17 chr1 87502923 87503290 -155161063 + THE1B-int LTR MaLR 2 372 -1208 1969 145 3 0 chr1 87503290 87503587 -155160766 - AluSg SINE Alu 0 310 13 8002 106 3 17 chr1 87503587 87504353 -155160000 + THE1B-int LTR MaLR 372 1120 -460 787 261 25 74 chr1 87504573 87504926 -155159427 - L1M4 LINE L1 -956 5190 4862 1296 211 0 0 chr1 87504926 87505173 -155159180 + L1PB4 LINE L1 5909 6155 -1 787 261 25 74 chr1 87505173 87505263 -155159090 - L1M4 LINE L1 -1284 4862 4769 566 287 142 14 chr1 87505317 87505669 -155158684 - L1M4 LINE L1 -2197 3949 3553 964 224 63 22 chr1 87505766 87506176 -155158177 - L1M4 LINE L1 -2851 3295 2869 5957 41 1 25 chr1 87507026 87507784 -155156569 - L1P LINE L1 -1903 4243 3504 7365 33 4 10 chr1 87507784 87509099 -155155254 + L1PA4 LINE L1 4845 6154 -1 680 258 75 30 chr1 87509278 87509657 -155154696 + MLT1E1 LTR MaLR 1 394 -230 287 256 113 69 chr1 87510034 87510194 -155154159 + LTR50 LTR ERVL 50 216 -579 307 330 72 5 chr1 87510248 87510472 -155153881 + LTR50 LTR ERVL 444 689 -106 2027 163 85 20 chr1 87510763 87511161 -155153192 - MSTB LTR MaLR 0 426 3 554 280 28 0 chr1 87512784 87512927 -155151426 + L2 LINE L2 2523 2669 -645 411 307 18 28 chr1 87512931 87513207 -155151146 + L2 LINE L2 2983 3313 0 524 252 52 9 chr1 87513616 87513731 -155150622 + FLAM_A SINE Alu 1 120 -13 21 0 0 0 chr1 87513844 87513865 -155150488 + AT_rich Low_complexity Low_complexity 1 21 0 282 325 61 78 chr1 87513986 87514331 -155150022 + L2 LINE L2 2932 3270 -2 25 0 0 0 chr1 87515259 87515284 -155149069 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr1 87515810 87515835 -155148518 + (A)n Simple_repeat Simple_repeat 1 25 0 2340 136 81 5 chr1 87517305 87517701 -155146652 + MSTA LTR MaLR 1 426 -2 257 264 83 58 chr1 87518020 87518141 -155146212 + L2 LINE L2 3190 3313 0 825 271 80 58 chr1 87518554 87518931 -155145422 + L2 LINE L2 1447 1831 -1483 326 308 35 41 chr1 87518951 87519123 -155145230 - L1MC5 LINE L1 -49 7912 7742 530 237 0 0 chr1 87519126 87519240 -155145113 + L2 LINE L2 1842 1955 -1359 557 147 0 0 chr1 87519240 87519335 -155145018 + MLT2B1 LTR ERVL 1 95 -425 230 158 0 0 chr1 87519340 87519378 -155144975 + MLT2B1 LTR ERVL 482 519 -1 1533 263 72 89 chr1 87519383 87520245 -155144108 + L2 LINE L2 1955 2801 -513 248 252 35 43 chr1 87520680 87520795 -155143558 + MER114 LTR ERV 533 646 -2 646 312 20 5 chr1 87521145 87521344 -155143009 - MIR SINE MIR -14 248 47 473 256 8 15 chr1 87521353 87521486 -155142867 + MLT1A2 LTR MaLR 28 159 -215 786 204 16 32 chr1 87521599 87521785 -155142568 + MLT1A2 LTR MaLR 186 368 -6 1126 247 77 21 chr1 87521938 87522314 -155142039 - MLT1C LTR MaLR -12 455 59 719 262 61 13 chr1 87524131 87524360 -155139993 + MIR SINE MIR 2 241 -21 772 265 47 16 chr1 87524952 87525205 -155139148 + MIR SINE MIR 2 262 0 490 331 149 28 chr1 87525515 87525980 -155138373 + L2 LINE L2 2782 3301 -12 898 87 0 0 chr1 87526013 87526139 -155138214 - L1PA5 LINE L1 -8 6146 6021 307 337 11 0 chr1 87526670 87526759 -155137594 + L2 LINE L2 3160 3249 -23 184 350 48 10 chr1 87527305 87527408 -155136945 - MIR SINE MIR -148 114 8 936 298 41 30 chr1 87527668 87528061 -155136292 + MLT1I LTR MaLR 13 409 0 466 325 100 13 chr1 87528077 87528308 -155136045 - MIR SINE MIR -5 257 7 561 193 35 0 chr1 87528509 87528623 -155135730 + MLT1D LTR MaLR 1 118 -387 41024 31 21 1 chr1 87528654 87534684 -155129669 - L1PA2 LINE L1 -1 6154 2 1433 161 118 65 chr1 87534688 87535060 -155129293 + MLT1D LTR MaLR 114 505 0 446 296 0 31 chr1 87535430 87535592 -155128761 - MIR SINE MIR 0 262 106 298 348 22 22 chr1 87535697 87535832 -155128521 + MIR SINE MIR 48 182 -80 620 274 171 29 chr1 87536153 87536434 -155127919 + L2 LINE L2 2992 3312 -1 515 266 139 76 chr1 87536443 87536930 -155127423 - L2 LINE L2 -21 3292 2785 309 26 0 0 chr1 87537156 87537194 -155127159 + (CAA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr1 87537323 87537345 -155127008 + AT_rich Low_complexity Low_complexity 1 22 0 236 263 111 10 chr1 87537424 87537523 -155126830 - L2 LINE L2 -47 3266 3158 448 305 16 21 chr1 87537611 87537801 -155126552 + MER5A DNA MER1_type 1 189 0 275 296 87 17 chr1 87539933 87540048 -155124305 + L2 LINE L2 3185 3307 -6 24 0 0 0 chr1 87540139 87540163 -155124190 + AT_rich Low_complexity Low_complexity 1 24 0 294 319 20 95 chr1 87540461 87540756 -155123597 - MLT1K LTR MaLR -35 553 281 780 258 111 62 chr1 87541084 87541664 -155122689 + MLT1G LTR MaLR 7 590 0 211 250 96 0 chr1 87542597 87542649 -155121704 + MIR SINE MIR 70 126 -136 2692 212 42 10 chr1 87543989 87544688 -155119665 - L1MC3 LINE L1 -116 7669 6949 3375 176 15 5 chr1 87544695 87545355 -155118998 - L1MC1 LINE L1 -5 6328 5662 1014 113 7 0 chr1 87545355 87545496 -155118857 - AluSq SINE Alu -19 294 153 1852 195 55 17 chr1 87545501 87546308 -155118045 - L1MC1 LINE L1 -676 5668 4836 7592 182 36 20 chr1 87546312 87546751 -155117602 - L1MC3 LINE L1 -743 5403 4973 4976 177 33 2 chr1 87546751 87547625 -155116728 + MER54A LTR ERVL 1 901 0 7592 182 36 20 chr1 87547625 87549125 -155115228 - L1MC3 LINE L1 -1173 4973 4987 1865 132 7 21 chr1 87549125 87549413 -155114940 - AluSq SINE Alu -17 296 13 7592 182 36 20 chr1 87549413 87549588 -155114765 - L1MC3 LINE L1 -1158 4988 4817 1468 246 38 6 chr1 87549709 87550075 -155114278 + MLT2C2 LTR ERVL 13 390 -74 294 73 0 0 chr1 87550095 87550105 -155114248 + (CA)n Simple_repeat Simple_repeat 1 51 0 294 73 0 0 chr1 87550105 87550146 -155114207 + (CA)n Simple_repeat Simple_repeat 2 42 0 1343 289 51 24 chr1 87550296 87550842 -155113511 - MER77 LTR ERV1 -4 601 41 1783 169 3 3 chr1 87550961 87551257 -155113096 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 87551301 87551322 -155113031 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr1 87552698 87552751 -155111602 + AT_rich Low_complexity Low_complexity 1 53 0 2277 173 28 26 chr1 87553254 87553677 -155110676 - MSTB LTR MaLR 0 426 3 7815 205 5 50 chr1 87553679 87555408 -155108945 - MSTB-int LTR MaLR 0 1651 1 391 138 0 0 chr1 87555408 87555473 -155108880 - MSTB LTR MaLR 0 426 362 1290 178 104 65 chr1 87555473 87555906 -155108447 + LTR7 LTR ERV1 1 450 0 17627 158 13 20 chr1 87555906 87563215 -155101138 + HERVH LTR ERV1 1 7152 -561 769 192 71 25 chr1 87563410 87563608 -155100745 + LTR7 LTR ERV1 244 450 0 1919 202 16 19 chr1 87563608 87563975 -155100378 - MSTB LTR MaLR -60 366 1 21 0 0 0 chr1 87564196 87564217 -155100136 + AT_rich Low_complexity Low_complexity 1 21 0 1052 93 12 12 chr1 87564641 87564776 -155099577 + L1PA7 LINE L1 5994 6131 -23 2206 74 33 3 chr1 87564776 87565075 -155099278 + AluY SINE Alu 3 310 -1 1052 93 12 12 chr1 87565075 87565100 -155099253 + L1PA7 LINE L1 6130 6154 0 886 250 181 52 chr1 87565102 87565626 -155098727 + MLT1G1 LTR MaLR 1 592 -3 184 143 33 22 chr1 87566596 87566687 -155097666 + (TA)n Simple_repeat Simple_repeat 1 92 0 33 43 0 0 chr1 87566832 87566879 -155097474 + AT_rich Low_complexity Low_complexity 1 47 0 690 317 65 4 chr1 87567375 87567621 -155096732 - MIR SINE MIR 0 262 2 186 275 87 14 chr1 87568369 87568438 -155095915 - MIR3 SINE MIR 0 208 135 236 43 63 77 chr1 87568865 87568925 -155095428 + L1ME LINE L1 5774 5817 -304 1996 117 0 13 chr1 87569239 87569539 -155094814 + AluSc SINE Alu 1 296 -13 217 306 0 0 chr1 87569738 87569787 -155094566 + MIR SINE MIR 49 97 -165 1768 212 35 47 chr1 87571718 87572227 -155092126 - MLT1D LTR MaLR -1 504 2 183 80 0 0 chr1 87574895 87574920 -155089433 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 26 0 0 0 chr1 87576696 87576722 -155087631 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 87577217 87577242 -155087111 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 87577331 87577352 -155087001 + AT_rich Low_complexity Low_complexity 1 21 0 429 359 76 51 chr1 87577974 87578448 -155085905 - L2 LINE L2 -1 3312 2827 180 217 133 33 chr1 87578746 87578806 -155085547 + L2 LINE L2 2137 2202 -1112 1507 306 106 35 chr1 87578904 87579647 -155084706 + L2 LINE L2 2151 2946 -368 1662 175 64 59 chr1 87579879 87580335 -155084018 + MER31B LTR ERV1 8 465 -1 1860 155 3 3 chr1 87582057 87582347 -155082006 - AluJo SINE Alu -22 290 1 1087 206 80 47 chr1 87582544 87582883 -155081470 + MLT1E2 LTR MaLR 1 350 -276 2149 124 0 0 chr1 87583034 87583333 -155081020 - AluSg1 SINE Alu -8 301 3 23608 127 13 4 chr1 87583619 87587435 -155076918 + L1PA8A LINE L1 1586 5436 -695 381 170 197 41 chr1 87587608 87587755 -155076598 + MER53 DNA DNA 1 170 -19 640 212 21 180 chr1 87588829 87589112 -155075241 - MIR SINE MIR -16 246 9 845 240 164 80 chr1 87589514 87590089 -155074264 + Charlie7 DNA MER1_type 2 624 -1988 2065 93 0 7 chr1 87590196 87590474 -155073879 + AluSc SINE Alu 1 276 -33 414 0 0 0 chr1 87590477 87590523 -155073830 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 571 194 5 97 chr1 87590612 87590798 -155073555 + Charlie7 DNA MER1_type 934 1102 -1510 276 160 290 99 chr1 87590795 87591157 -155073196 + Charlie7 DNA MER1_type 2181 2611 -1 * 624 303 72 5 chr1 87591219 87591440 -155072913 + MIR SINE MIR 26 261 -1 495 264 92 0 chr1 87591997 87592160 -155072193 - MER58A DNA MER1_type -2 222 45 555 284 0 8 chr1 87592172 87592306 -155072047 + L2 LINE L2 3180 3312 -1 22 35 0 0 chr1 87593287 87593316 -155071037 + AT_rich Low_complexity Low_complexity 1 29 0 313 335 96 70 chr1 87593917 87594385 -155069968 - L2 LINE L2 0 3313 2834 662 222 90 66 chr1 87595753 87595965 -155068388 + MER20 DNA MER1_type 2 218 -1 442 320 92 21 chr1 87596038 87596322 -155068031 + L1ME LINE L1 5483 5786 -335 234 0 0 0 chr1 87598004 87598030 -155066323 + (CA)n Simple_repeat Simple_repeat 2 27 0 892 185 19 6 chr1 87598622 87598779 -155065574 + MER49 LTR ERV1 1 159 -764 821 148 8 0 chr1 87598807 87598935 -155065418 + Charlie3 DNA MER1_type 136 264 -2446 457 133 13 27 chr1 87598940 87599015 -155065338 + Charlie3 DNA MER1_type 2629 2702 -8 * 978 120 13 6 chr1 87599013 87599166 -155065187 + MER49 LTR ERV1 149 303 -616 5878 107 19 2 chr1 87599166 87600180 -155064173 + L1PA13 LINE L1 5128 6160 -3 49 43 0 0 chr1 87603768 87603838 -155060515 + AT_rich Low_complexity Low_complexity 1 70 0 752 280 68 86 chr1 87605621 87606089 -155058264 + LTR16B LTR ERVL 5 464 0 28 48 0 0 chr1 87607382 87607424 -155056929 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 87607908 87607933 -155056420 + AT_rich Low_complexity Low_complexity 1 25 0 585 348 185 5 chr1 87608448 87608870 -155055483 - L2 LINE L2 -5 3308 2811 2040 252 115 79 chr1 87609722 87611319 -155053034 + HAL1 LINE L1 638 2292 -215 732 255 27 27 chr1 87611551 87611810 -155052543 + MIR SINE MIR 3 261 -1 209 211 11 63 chr1 87612725 87612820 -155051533 + MER5C DNA MER1_type 214 303 -21 330 332 124 26 chr1 87614148 87614374 -155049979 - L3 LINE CR1 -975 602 355 1744 179 10 3 chr1 87615624 87615921 -155048432 + AluJb SINE Alu 1 299 -13 22 56 0 0 chr1 87615993 87616029 -155048324 + AT_rich Low_complexity Low_complexity 1 36 0 1919 113 22 6 chr1 87616445 87616765 -155047588 + L1PA8A LINE L1 5807 6131 0 2690 19 0 3 chr1 87617066 87617375 -155046978 + AluY SINE Alu 1 308 -3 1986 148 0 0 chr1 87618387 87618690 -155045663 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr1 87621906 87621934 -155042419 + AT_rich Low_complexity Low_complexity 1 28 0 254 259 0 60 chr1 87623031 87623120 -155041233 + MIR SINE MIR 17 99 -109 2134 57 92 3 chr1 87623142 87623424 -155040929 + AluY SINE Alu 1 307 -4 1583 171 4 8 chr1 87623883 87624140 -155040213 + AluJo SINE Alu 13 268 -44 255 61 0 0 chr1 87624153 87624186 -155040167 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1975 101 4 4 chr1 87626134 87626402 -155037951 + AluSx SINE Alu 28 295 -17 180 0 0 0 chr1 87626402 87626422 -155037931 + (TA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr1 87626684 87626713 -155037640 + AT_rich Low_complexity Low_complexity 1 29 0 1577 224 32 30 chr1 87628419 87628851 -155035502 + MLT1C LTR MaLR 33 465 -2 360 349 48 7 chr1 87629156 87629302 -155035051 - MIR SINE MIR -21 241 90 32 0 0 0 chr1 87629629 87629661 -155034692 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 87629842 87629880 -155034473 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr1 87630802 87630830 -155033523 + AT_rich Low_complexity Low_complexity 1 28 0 24 91 0 0 chr1 87631045 87631111 -155033242 + AT_rich Low_complexity Low_complexity 1 66 0 25 51 0 0 chr1 87631923 87631962 -155032391 + AT_rich Low_complexity Low_complexity 1 39 0 256 296 35 78 chr1 87631962 87632192 -155032161 - L2 LINE L2 -796 2518 2299 263 359 98 5 chr1 87632839 87633023 -155031330 - MIR SINE MIR -31 231 31 413 329 71 56 chr1 87634579 87635029 -155029324 + HAL1b LINE L1 347 766 -582 1924 128 11 0 chr1 87635091 87635410 -155028943 + AluSq SINE Alu 1 322 0 455 318 150 21 chr1 87635712 87636093 -155028260 + L1M4 LINE L1 2131 2560 -3586 254 231 67 67 chr1 87637247 87637351 -155027002 - HsTC2 DNA Tc2 -1007 891 788 14466 137 22 10 chr1 87638056 87640444 -155023909 + Tigger1 DNA MER2_type 1 2417 -1 341 240 58 50 chr1 87640458 87640579 -155023774 + L1ME LINE L1 5356 5477 -644 1312 204 125 25 chr1 87641850 87642180 -155022173 + MLT1A1 LTR MaLR 1 428 0 914 88 16 0 chr1 87642317 87642442 -155021911 - AluSc SINE Alu -20 289 163 1649 83 0 0 chr1 87642445 87642650 -155021703 - AluSc SINE Alu -89 220 16 283 271 65 93 chr1 87642903 87643010 -155021343 - MER91A DNA MER1_type 0 196 93 2125 117 7 3 chr1 87643105 87643405 -155020948 - AluSq SINE Alu -12 301 1 240 407 29 21 chr1 87644227 87644367 -155019986 + L2 LINE L2 3126 3266 -6 382 291 133 35 chr1 87646894 87647097 -155017256 - MIR SINE MIR -3 259 37 228 35 0 0 chr1 87647219 87647248 -155017105 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1291 205 107 25 chr1 87647344 87647661 -155016692 + MER61A LTR ERV1 1 343 0 2261 132 117 81 chr1 87647663 87648208 -155016145 + MER61A-int LTR ERV1 3 567 -4650 * 25312 101 26 19 chr1 87648185 87649460 -155014893 + MER61A-int LTR ERV1 1393 2658 -2559 2298 152 13 90 chr1 87649460 87649993 -155014360 + LTR22B LTR ERVK 1 492 0 25312 101 26 19 chr1 87649993 87652505 -155011848 + MER61A-int LTR ERV1 2658 5208 -9 667 45 0 0 chr1 87652505 87652593 -155011760 - L1PA4 LINE L1 0 6155 6068 25312 101 26 19 chr1 87652593 87652604 -155011749 + MER61A-int LTR ERV1 5208 5217 0 1254 192 140 26 chr1 87652604 87652912 -155011441 + MER61A LTR ERV1 1 343 0 2002 131 10 3 chr1 87652977 87653282 -155011071 - AluSq SINE Alu -6 307 1 21 36 0 0 chr1 87653828 87653856 -155010497 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 87654599 87654625 -155009728 + AT_rich Low_complexity Low_complexity 1 26 0 32 101 0 0 chr1 87654788 87654897 -155009456 + AT_rich Low_complexity Low_complexity 1 109 0 21 0 0 0 chr1 87655430 87655451 -155008902 + AT_rich Low_complexity Low_complexity 1 21 0 1490 228 63 47 chr1 87655734 87656229 -155008124 - MLT1D LTR MaLR -2 503 1 210 336 86 0 chr1 87656792 87656908 -155007445 + MIR SINE MIR 116 241 -21 26 0 0 0 chr1 87656950 87656976 -155007377 + AT_rich Low_complexity Low_complexity 1 26 0 916 269 96 72 chr1 87657074 87657614 -155006739 + L1MEc LINE L1 64 616 -5780 22 88 0 0 chr1 87657627 87657684 -155006669 + AT_rich Low_complexity Low_complexity 1 57 0 289 238 107 23 chr1 87657754 87657902 -155006451 + MER58 DNA MER1_type 49 2420 0 1803 240 63 35 chr1 87657902 87658557 -155005796 + L1M4 LINE L1 3383 4055 -2091 342 261 67 0 chr1 87658572 87658691 -155005662 + L1ME1 LINE L1 6022 6148 -18 381 288 44 6 chr1 87658716 87658876 -155005477 + L1M4 LINE L1 4657 4822 -1324 195 100 0 0 chr1 87658895 87658925 -155005428 + (TAG)n Simple_repeat Simple_repeat 3 32 0 22 0 0 0 chr1 87659201 87659223 -155005130 + AT_rich Low_complexity Low_complexity 1 22 0 445 340 60 14 chr1 87659869 87660084 -155004269 - MIR SINE MIR -7 255 31 3436 119 24 4 chr1 87660732 87661271 -155003082 + L1PB2 LINE L1 5599 6148 -3 264 77 0 0 chr1 87661394 87661433 -155002920 + (CA)n Simple_repeat Simple_repeat 1 39 0 25 51 0 0 chr1 87661604 87661643 -155002710 + AT_rich Low_complexity Low_complexity 1 39 0 617 351 74 20 chr1 87661920 87662273 -155002080 - L3b LINE CR1 -8 1575 1204 23 33 0 0 chr1 87662483 87662513 -155001840 + AT_rich Low_complexity Low_complexity 1 30 0 286 277 188 0 chr1 87662684 87662796 -155001557 + MIR SINE MIR 129 261 -1 33 66 0 0 chr1 87663015 87663076 -155001277 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr1 87663301 87663323 -155001030 + AT_rich Low_complexity Low_complexity 1 22 0 698 274 52 22 chr1 87663578 87663808 -155000545 - MLT1L LTR MaLR -4 611 375 580 318 108 38 chr1 87663831 87664275 -155000078 + L1MEd LINE L1 12 486 -5633 737 290 104 54 chr1 87664284 87664954 -154999399 + L1MEd LINE L1 536 1239 -4880 339 331 79 17 chr1 87664998 87665176 -154999177 + HAL1 LINE L1 1416 1604 -903 192 178 22 22 chr1 87665349 87665394 -154998959 + MIR SINE MIR 193 237 -25 1173 278 87 68 chr1 87665679 87666639 -154997714 + HAL1b LINE L1 364 1341 -7 3035 131 10 12 chr1 87666931 87667413 -154996940 + L1PA15 LINE L1 5677 6157 -8 1133 201 26 63 chr1 87667569 87667858 -154996495 + AluJo SINE Alu 24 302 0 21 0 0 0 chr1 87669194 87669215 -154995138 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 87670294 87670320 -154994033 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr1 87670676 87670712 -154993641 + AT_rich Low_complexity Low_complexity 1 36 0 193 343 51 29 chr1 87670999 87671136 -154993217 - MIR SINE MIR -2 260 121 21 36 0 0 chr1 87674383 87674411 -154989942 + AT_rich Low_complexity Low_complexity 1 28 0 2265 83 0 17 chr1 87674815 87675115 -154989238 - AluY SINE Alu -16 295 1 271 325 34 8 chr1 87676582 87676699 -154987654 + MER117 DNA MER1_type 6 125 -72 266 233 89 33 chr1 87676951 87677041 -154987312 - MIR3 SINE MIR -1 207 113 21 0 0 0 chr1 87677272 87677293 -154987060 + AT_rich Low_complexity Low_complexity 1 21 0 248 279 67 53 chr1 87677766 87677974 -154986379 - HAL1 LINE L1 -1156 1351 1141 307 251 113 78 chr1 87728768 87728999 -154935354 - HAL1 LINE L1 -1444 1063 825 2263 98 7 0 chr1 87729604 87729910 -154934443 - AluSc SINE Alu -1 308 1 476 274 37 0 chr1 87730092 87730227 -154934126 + MIR SINE MIR 109 248 -14 21 0 0 0 chr1 87730236 87730257 -154934096 + AT_rich Low_complexity Low_complexity 1 21 0 1200 83 0 0 chr1 87730659 87730838 -154933515 + AluY SINE Alu 124 302 0 564 56 0 0 chr1 87731033 87731105 -154933248 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 201 183 28 14 chr1 87732347 87732418 -154931935 + GA-rich Low_complexity Low_complexity 2 73 0 249 33 0 0 chr1 87732708 87732738 -154931615 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 294 233 198 0 chr1 87733454 87733570 -154930783 - MARNA DNA Mariner -44 542 404 295 292 88 23 chr1 87733790 87733961 -154930392 - L2 LINE L2 -527 2787 2606 * 343 309 0 21 chr1 87733914 87734008 -154930345 - MIR SINE MIR -170 92 1 23 33 0 0 chr1 87734118 87734148 -154930205 + AT_rich Low_complexity Low_complexity 1 30 0 913 228 19 28 chr1 87738739 87738954 -154925399 + L1ME1 LINE L1 5937 6149 -17 272 242 23 117 chr1 87739351 87739479 -154924874 - MIR SINE MIR -126 136 21 2154 98 3 0 chr1 87739518 87739803 -154924550 - AluSc SINE Alu -23 286 1 225 0 0 0 chr1 87739929 87739954 -154924399 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr1 87740155 87740177 -154924176 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2065 89 27 3 chr1 87740984 87741277 -154923076 - AluY SINE Alu -11 300 1 225 0 0 0 chr1 87741406 87741431 -154922922 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 297 80 0 0 chr1 87742671 87742721 -154921632 - Alu SINE Alu 0 308 259 183 42 0 0 chr1 87743449 87743473 -154920880 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 197 238 24 0 chr1 87744425 87744467 -154919886 + MIR3 SINE MIR 114 156 -52 2259 95 17 0 chr1 87744516 87744812 -154919541 - AluY SINE Alu -10 301 1 347 375 25 20 chr1 87745106 87745306 -154919047 + L3 LINE CR1 464 664 -913 22 0 0 0 chr1 87745687 87745709 -154918644 + AT_rich Low_complexity Low_complexity 1 22 0 207 263 0 18 chr1 87748221 87748278 -154916075 + GA-rich Low_complexity Low_complexity 2 57 0 245 167 19 0 chr1 87748488 87748542 -154915811 + CT-rich Low_complexity Low_complexity 1 55 0 26 30 0 0 chr1 87751421 87751454 -154912899 + AT_rich Low_complexity Low_complexity 1 33 0 3740 226 95 76 chr1 87752271 87753853 -154910500 + L1M2 LINE L1 1445 3090 -3758 312 27 0 0 chr1 87753853 87753890 -154910463 + (CA)n Simple_repeat Simple_repeat 2 38 0 3740 226 95 76 chr1 87753890 87753936 -154910417 + L1M2 LINE L1 3090 3134 -3714 * 9856 210 26 12 chr1 87753925 87756653 -154907700 + L1PA16 LINE L1 3528 6294 -574 22 0 0 0 chr1 87756704 87756726 -154907627 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 87756732 87756754 -154907599 + (A)n Simple_repeat Simple_repeat 1 22 0 1659 191 15 3 chr1 87757165 87757506 -154906847 + L1PA16 LINE L1 6508 6852 -16 27 29 0 0 chr1 87757551 87757585 -154906768 + AT_rich Low_complexity Low_complexity 1 34 0 472 300 7 27 chr1 87758065 87758215 -154906138 - L2 LINE L2 -15 3298 3152 309 278 93 33 chr1 87758359 87758510 -154905843 + MLT1J LTR MaLR 135 294 -217 2200 104 3 0 chr1 87761152 87761451 -154902902 - AluSc SINE Alu -9 300 1 183 114 0 0 chr1 87761459 87761494 -154902859 + (T)n Simple_repeat Simple_repeat 1 35 0 203 182 0 0 chr1 87762365 87762398 -154901955 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 244 274 32 0 chr1 87762437 87762499 -154901854 - MIR3 SINE MIR -46 162 99 709 208 26 0 chr1 87762800 87762954 -154901399 - L1MD3 LINE L1 -14 7981 7824 378 248 67 0 chr1 87763106 87763211 -154901142 + L1MEc LINE L1 375 486 -6235 304 325 80 40 chr1 87763907 87764058 -154900295 + L1MEc LINE L1 404 560 -5980 2549 251 87 20 chr1 87764169 87765232 -154899121 + L1MEc LINE L1 996 2129 -4411 889 121 15 0 chr1 87765437 87765569 -154898784 + AluSc SINE Alu 155 288 -21 249 321 12 12 chr1 87766106 87766190 -154898163 + MIR SINE MIR 31 114 -94 12045 36 4 1 chr1 87767286 87769513 -154894840 - L1PA4 LINE L1 -2 6153 3921 219 257 14 40 chr1 87771903 87771977 -154892376 - L2 LINE L2 0 3272 3201 523 302 69 75 chr1 87772862 87773372 -154890981 + MLT1J LTR MaLR 3 509 -2 183 100 0 0 chr1 87773668 87773698 -154890655 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr1 87775135 87775155 -154889198 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 268 337 35 12 chr1 87775158 87775249 -154889104 + L1ME LINE L1 5564 5651 -470 429 54 0 0 chr1 87775249 87775305 -154889048 + (CA)n Simple_repeat Simple_repeat 2 57 0 268 337 35 12 chr1 87775305 87775385 -154888968 + L1ME LINE L1 5651 5739 -382 1418 192 22 18 chr1 87775399 87775675 -154888678 - AluJo SINE Alu -35 277 1 21 57 0 0 chr1 87776882 87776917 -154887436 + AT_rich Low_complexity Low_complexity 1 35 0 1519 167 65 151 chr1 87776931 87777427 -154886926 + MER21A LTR ERV1 3 455 -476 499 192 109 77 chr1 87777437 87777533 -154886820 + MER21A LTR ERV1 754 858 -73 333 0 0 0 chr1 87777533 87777570 -154886783 + (CA)n Simple_repeat Simple_repeat 2 38 0 499 192 109 77 chr1 87777570 87777629 -154886724 + MER21A LTR ERV1 858 914 -17 2894 151 25 25 chr1 87777755 87778326 -154886027 + L1MA9 LINE L1 5742 6312 0 260 311 100 0 chr1 87779089 87779179 -154885174 - L2 LINE L2 -16 3256 3158 2349 146 46 12 chr1 87779364 87779774 -154884579 + MSTA LTR MaLR 1 424 -4 1304 316 59 33 chr1 87779797 87779910 -154884443 + L2 LINE L2 2396 2505 -808 1650 187 20 0 chr1 87779910 87780209 -154884144 - AluJo SINE Alu -7 305 1 1304 316 59 33 chr1 87780209 87780840 -154883513 + L2 LINE L2 2505 3160 -153 207 194 0 0 chr1 87780841 87780877 -154883476 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 507 316 40 7 chr1 87780884 87781036 -154883317 - MER77 LTR ERV1 -78 527 371 23 0 0 0 chr1 87781037 87781060 -154883293 + AT_rich Low_complexity Low_complexity 1 23 0 396 252 41 49 chr1 87781069 87781192 -154883161 + L2 LINE L2 3192 3313 0 227 286 0 22 chr1 87781319 87781410 -154882943 - L1MC4 LINE L1 -1340 6702 6614 1962 253 44 37 chr1 87781663 87782216 -154882137 - MER77 LTR ERV1 -7 598 67 1810 128 50 7 chr1 87782235 87782517 -154881836 - AluSg1 SINE Alu -15 294 1 224 189 0 0 chr1 87782942 87782979 -154881374 + polypyrimidine Low_complexity Low_complexity 4 40 0 1999 97 3 88 chr1 87782982 87783322 -154881031 - AluSx SINE Alu 0 312 2 407 208 0 10 chr1 87783719 87783820 -154880533 + CT-rich Low_complexity Low_complexity 2 101 0 1823 129 0 82 chr1 87783822 87784162 -154880191 - AluSx SINE Alu 0 312 1 231 259 74 12 chr1 87784187 87784268 -154880085 + MIR SINE MIR 108 193 -69 278 269 13 13 chr1 87784491 87784569 -154879784 + L1M4 LINE L1 3490 3567 -2579 318 271 97 99 chr1 87784755 87785032 -154879321 + L1M4 LINE L1 3804 4082 -2064 2006 135 0 0 chr1 87785032 87785352 -154879001 + AluSx SINE Alu 1 320 0 318 271 97 99 chr1 87785352 87785435 -154878918 + L1M4 LINE L1 4082 4164 -1982 1885 133 6 37 chr1 87785436 87785571 -154878782 + AluSx SINE Alu 1 139 -173 2044 141 0 3 chr1 87785571 87785884 -154878469 + AluSx SINE Alu 1 312 0 1885 133 6 37 chr1 87785884 87786070 -154878283 + AluSx SINE Alu 139 312 0 253 312 0 32 chr1 87786607 87786700 -154877653 + GA-rich Low_complexity Low_complexity 1 90 0 1483 226 70 29 chr1 87787313 87787767 -154876586 - L1MA7 LINE L1 0 6291 5808 261 183 117 17 chr1 87787891 87788011 -154876342 - Charlie7 DNA MER1_type -62 2550 2419 320 231 193 42 chr1 87788014 87788226 -154876127 - Charlie7 DNA MER1_type -1901 711 468 195 42 0 0 chr1 87788240 87788264 -154876089 + (CA)n Simple_repeat Simple_repeat 2 25 0 258 32 0 0 chr1 87788273 87788304 -154876049 + (TA)n Simple_repeat Simple_repeat 1 31 0 1399 199 26 18 chr1 87788574 87788846 -154875507 + AluJo SINE Alu 1 274 -38 291 247 31 10 chr1 87790042 87790139 -154874214 - Charlie7 DNA MER1_type -1992 620 522 231 36 0 0 chr1 87790196 87790224 -154874129 + (TC)n Simple_repeat Simple_repeat 2 29 0 387 0 0 0 chr1 87790224 87790267 -154874086 + (CA)n Simple_repeat Simple_repeat 2 44 0 2489 166 36 32 chr1 87790796 87791488 -154872865 + MER51A LTR ERV1 1 625 -9 263 243 142 81 chr1 87791827 87791975 -154872378 + MLT1L LTR MaLR 115 271 -344 414 0 0 0 chr1 87792128 87792174 -154872179 + (TG)n Simple_repeat Simple_repeat 2 47 0 1875 154 123 41 chr1 87792174 87792563 -154871790 - MSTA LTR MaLR -5 423 3 8073 192 32 4 chr1 87792565 87794171 -154870182 - MSTA-int LTR MaLR 0 1651 1 1899 168 144 5 chr1 87794171 87794547 -154869806 - MSTA LTR MaLR 0 428 1 1939 143 4 0 chr1 87794722 87795001 -154869352 + AluSx SINE Alu 9 288 -24 431 296 177 16 chr1 87795405 87795591 -154868762 - MIR SINE MIR -26 236 21 21 0 0 0 chr1 87796012 87796033 -154868320 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr1 87796445 87796485 -154867868 + AT_rich Low_complexity Low_complexity 1 40 0 1015 237 48 41 chr1 87796717 87797134 -154867219 + L1ME1 LINE L1 2081 2500 -4040 1105 184 51 0 chr1 87797139 87797356 -154866997 + L1MD1 LINE L1 6014 6241 -1 2324 252 28 39 chr1 87797358 87798108 -154866245 + L1ME1 LINE L1 5818 6559 -1 223 358 122 0 chr1 87798598 87798746 -154865607 - MIR SINE MIR -7 255 90 21 0 0 0 chr1 87798884 87798905 -154865448 + AT_rich Low_complexity Low_complexity 1 21 0 246 62 0 0 chr1 87799466 87799498 -154864855 + (A)n Simple_repeat Simple_repeat 1 32 0 2830 158 47 42 chr1 87800505 87801056 -154863297 - MLT2B3 LTR ERVL 0 554 1 210 192 0 19 chr1 87801687 87801739 -154862614 + (TAA)n Simple_repeat Simple_repeat 1 51 0 315 320 27 68 chr1 87801769 87801988 -154862365 + MIR SINE MIR 53 262 0 21 36 0 0 chr1 87802470 87802498 -154861855 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 87805034 87805058 -154859295 + AT_rich Low_complexity Low_complexity 1 24 0 2172 143 92 8 chr1 87805498 87805889 -154858464 + MSTA LTR MaLR 5 428 0 269 284 42 0 chr1 87805917 87806012 -154858341 + CT-rich Low_complexity Low_complexity 4 102 0 346 194 0 0 chr1 87810853 87810920 -154853433 - L1PA16 LINE L1 -16 6150 6084 220 311 84 9 chr1 87810925 87811087 -154853266 + MIR SINE MIR 13 241 -21 24 0 0 0 chr1 87812485 87812509 -154851844 + AT_rich Low_complexity Low_complexity 1 24 0 333 298 119 33 chr1 87813464 87813615 -154850738 + MIR SINE MIR 1 164 -98 39 74 0 0 chr1 87813702 87813783 -154850570 + AT_rich Low_complexity Low_complexity 1 81 0 212 211 19 19 chr1 87814509 87814561 -154849792 + (TATATG)n Simple_repeat Simple_repeat 1 52 0 380 322 41 29 chr1 87814665 87814836 -154849517 - MIR SINE MIR -14 248 76 528 16 0 0 chr1 87816201 87816262 -154848091 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 1468 196 57 0 chr1 87816262 87816406 -154847947 - AluJb SINE Alu -32 280 146 225 0 0 0 chr1 87816406 87816431 -154847922 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1468 196 57 0 chr1 87816431 87816551 -154847802 - AluJb SINE Alu -166 146 1 21 0 0 0 chr1 87816727 87816748 -154847605 + AT_rich Low_complexity Low_complexity 1 21 0 32 67 0 0 chr1 87817025 87817085 -154847268 + AT_rich Low_complexity Low_complexity 1 60 0 349 282 86 34 chr1 87817483 87817600 -154846753 - L2 LINE L2 0 3272 3150 856 234 98 14 chr1 87818053 87818267 -154846086 + MIR SINE MIR 3 234 -28 1516 288 73 13 chr1 87818687 87819301 -154845052 + MER20B DNA MER1_type 1 651 -132 441 0 0 0 chr1 87820406 87820455 -154843898 + (TG)n Simple_repeat Simple_repeat 2 50 0 719 220 55 84 chr1 87820979 87821252 -154843101 - L1ME3 LINE L1 -3 6159 5895 617 165 0 0 chr1 87821296 87821405 -154842948 + L1MB1 LINE L1 6053 6161 -7 2251 109 3 0 chr1 87822903 87823206 -154841147 - AluSx SINE Alu -8 304 1 350 173 13 0 chr1 87823445 87823520 -154840833 + CT-rich Low_complexity Low_complexity 4 79 0 924 170 12 18 chr1 87823542 87823713 -154840640 - AluJo SINE Alu -41 271 102 692 109 0 70 chr1 87823720 87824007 -154840346 + (TCTA)n Simple_repeat Simple_repeat 1 266 0 512 196 20 20 chr1 87824057 87824159 -154840194 - AluJo SINE Alu -210 102 1 561 13 39 0 chr1 87824251 87824329 -154840024 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 2147 141 41 8 chr1 87825329 87825691 -154838662 + THE1C LTR MaLR 1 374 -1 1581 167 0 65 chr1 87826126 87826432 -154837921 + AluJo SINE Alu 9 294 -18 25 31 0 0 chr1 87826947 87826979 -154837374 + AT_rich Low_complexity Low_complexity 1 32 0 609 264 157 55 chr1 87827061 87827232 -154837121 + MLT1H LTR MaLR 1 153 -396 734 218 22 28 chr1 87827232 87827332 -154837021 + MER45A DNA AcHobo 1 101 -1480 2293 53 49 0 chr1 87827332 87827617 -154836736 - AluY SINE Alu -12 299 1 734 218 22 28 chr1 87827617 87827695 -154836658 + MER45A DNA AcHobo 101 178 0 609 264 157 55 chr1 87827695 87827956 -154836397 + MLT1H LTR MaLR 153 536 -13 24 77 0 0 chr1 87828395 87828447 -154835906 + AT_rich Low_complexity Low_complexity 1 52 0 2428 128 11 0 chr1 87829108 87829468 -154834885 + THE1B LTR MaLR 1 364 0 30 27 0 0 chr1 87829581 87829618 -154834735 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 87830080 87830109 -154834244 + AT_rich Low_complexity Low_complexity 1 29 0 656 192 54 0 chr1 87831471 87831601 -154832752 + AluJb SINE Alu 137 273 -39 270 0 0 0 chr1 87831606 87831636 -154832717 + (CA)n Simple_repeat Simple_repeat 1 30 0 1591 204 13 3 chr1 87831650 87831954 -154832399 - AluJb SINE Alu -5 307 1 429 54 0 0 chr1 87832010 87832066 -154832287 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 685 276 204 30 chr1 87832722 87833153 -154831200 - MLT1H LTR MaLR -28 521 16 1580 285 53 6 chr1 87833583 87834113 -154830240 + MLT1H1 LTR MaLR 1 555 0 253 289 42 24 chr1 87834113 87834279 -154830074 + MLT1H1-int LTR MaLR 1 169 -1202 263 351 27 11 chr1 87834292 87834480 -154829873 + MLT1H1-int LTR MaLR 333 523 -848 2536 60 0 0 chr1 87835093 87835393 -154828960 - AluY SINE Alu -11 300 1 381 279 20 131 chr1 87835415 87835773 -154828580 + MLT1H1-int LTR MaLR 1028 1345 -26 835 261 213 18 chr1 87835787 87836281 -154828072 + MLT1H1 LTR MaLR 1 590 0 1284 284 40 3 chr1 87836432 87836859 -154827494 + MLT1H1 LTR MaLR 1 478 -77 437 176 0 0 chr1 87837787 87837861 -154826492 - AluY SINE Alu -21 290 217 186 238 71 0 chr1 87839629 87839671 -154824682 + L2 LINE L2 3269 3313 0 235 281 14 108 chr1 87839760 87839899 -154824454 - LTR16B LTR ERVL -2 462 337 739 102 60 114 chr1 87839908 87840132 -154824221 + LTR12 LTR ERV1 1 277 -437 263 257 14 0 chr1 87840132 87840206 -154824147 + LTR30 LTR ERV1 544 618 -104 711 152 9 0 chr1 87840206 87840318 -154824035 + LTR12 LTR ERV1 352 464 -250 402 339 43 40 chr1 87840320 87840621 -154823732 - LTR16B LTR ERVL -119 345 44 796 334 40 6 chr1 87841160 87841511 -154822842 - L2 LINE L2 -296 3017 2658 322 289 110 26 chr1 87841581 87842083 -154822270 + L1ME LINE L1 2420 2963 -3183 542 298 59 30 chr1 87842313 87842618 -154821735 + L1ME LINE L1 5311 5624 -546 562 248 15 0 chr1 87842632 87842765 -154821588 - LTR16A1 LTR ERVL 0 457 323 278 230 18 159 chr1 87843007 87843233 -154821120 + L1ME LINE L1 5683 5876 -294 1381 307 81 27 chr1 87843620 87844251 -154820102 - L2 LINE L2 -838 2476 1812 311 318 71 8 chr1 87845954 87846080 -154818273 - MIR SINE MIR -48 214 81 961 94 50 78 chr1 87846244 87846378 -154817975 + MER30 DNA MER1_type 1 131 -99 2198 86 4 0 chr1 87846378 87846692 -154817661 - AluSg SINE Alu 0 315 1 961 94 50 78 chr1 87846692 87846736 -154817617 + MER30 DNA MER1_type 131 175 -55 294 293 23 38 chr1 87847276 87847409 -154816944 - L1ME LINE L1 -462 5659 5529 2758 38 3 9 chr1 87848279 87848620 -154815733 - L1PA4 LINE L1 -20 6135 5797 211 312 75 11 chr1 87849013 87849106 -154815247 - L2 LINE L2 -55 3258 3160 465 340 70 78 chr1 87849361 87849935 -154814418 + L1MEd LINE L1 90 658 -5461 429 242 77 71 chr1 87849993 87850175 -154814178 - L2 LINE L2 0 3313 3131 1662 197 168 0 chr1 87850175 87850581 -154813772 - MLT1D LTR MaLR -31 474 1 877 327 31 5 chr1 87850582 87850995 -154813358 + L1ME3A LINE L1 5528 5951 -219 251 285 146 7 chr1 87851215 87851352 -154813001 + MIR SINE MIR 80 235 -27 423 216 112 40 chr1 87851710 87851835 -154812518 - L2 LINE L2 0 3313 3180 477 283 22 54 chr1 87852104 87852288 -154812065 + LTR33 LTR ERVL 42 219 -302 2467 136 3 3 chr1 87852747 87853122 -154811231 + THE1C LTR MaLR 1 375 0 554 241 0 0 chr1 87853297 87853409 -154810944 - L2 LINE L2 -1033 2281 2170 21 0 0 0 chr1 87853975 87853996 -154810357 + AT_rich Low_complexity Low_complexity 1 21 0 1602 173 18 7 chr1 87854960 87855238 -154809115 - AluJo SINE Alu -26 286 6 22 0 0 0 chr1 87855517 87855539 -154808814 + AT_rich Low_complexity Low_complexity 1 22 0 397 353 88 8 chr1 87856475 87856724 -154807629 + L3 LINE CR1 1298 1566 -11 988 207 0 0 chr1 87858021 87858229 -154806124 - AluY SINE Alu 0 311 104 1352 282 153 21 chr1 87858423 87859089 -154805264 + L2 LINE L2 1555 2308 -1006 369 339 130 17 chr1 87859061 87859291 -154805062 - MIR SINE MIR -1 261 6 * 2510 33 40 0 chr1 87859658 87859957 -154804396 + AluY SINE Alu 1 311 0 225 159 0 0 chr1 87860448 87860492 -154803861 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 419 333 31 6 chr1 87860493 87860652 -154803701 - L2 LINE L2 -1760 1554 1392 234 200 0 29 chr1 87860680 87860750 -154803603 + HAL1 LINE L1 1113 1180 -1327 908 292 91 40 chr1 87860882 87861410 -154802943 + HAL1 LINE L1 1404 1958 -549 2641 176 23 15 chr1 87861438 87861538 -154802815 - MER66B LTR ERV1 0 486 388 2307 97 3 0 chr1 87861538 87861837 -154802516 - AluSp SINE Alu -13 300 1 2641 176 23 15 chr1 87861837 87862212 -154802141 - MER66B LTR ERV1 -98 388 7 2012 122 27 3 chr1 87862490 87862786 -154801567 + AluSx SINE Alu 1 303 -9 470 114 13 0 chr1 87863081 87863160 -154801193 + MADE1 DNA Mariner 1 80 0 255 103 0 0 chr1 87863194 87863233 -154801120 + (CA)n Simple_repeat Simple_repeat 2 40 0 2183 109 13 7 chr1 87863310 87863613 -154800740 + AluSg SINE Alu 1 305 -5 922 221 70 19 chr1 87863764 87864035 -154800318 - L1ME2 LINE L1 -46 6118 5834 246 354 61 25 chr1 87864117 87864315 -154800038 + LTR16B LTR ERVL 119 323 -141 719 196 231 64 chr1 87864320 87864632 -154799721 - MLT1A1 LTR MaLR 0 365 2 319 238 69 19 chr1 87864706 87864866 -154799487 - L1ME2 LINE L1 -335 5829 5662 666 190 9 0 chr1 87864872 87864988 -154799365 - FLAM_C SINE Alu -16 127 11 577 259 124 52 chr1 87865094 87865258 -154799095 - L1M3 LINE L1 -524 5640 5489 2185 114 3 10 chr1 87865258 87865566 -154798787 - AluSx SINE Alu -6 306 1 577 259 124 52 chr1 87865566 87865740 -154798613 - L1M3 LINE L1 -675 5489 5266 4390 123 169 35 chr1 87865740 87866738 -154797615 + MER11B LTR ERVK 1 1236 0 2354 261 98 13 chr1 87866739 87867935 -154796418 - L1M3 LINE L1 -874 5272 3912 1388 264 36 5 chr1 87867978 87868395 -154795958 - L1M4 LINE L1 -2019 4127 3698 716 293 63 0 chr1 87868455 87868708 -154795645 - L1M4 LINE L1 -2429 3717 3449 569 306 149 40 chr1 87868708 87869130 -154795223 - LTR16C LTR ERVL -20 471 4 1766 73 0 37 chr1 87869298 87869578 -154794775 - AluY SINE Alu 0 316 46 677 101 0 0 chr1 87869579 87869678 -154794675 - AluSc SINE Alu -208 101 3 310 160 53 40 chr1 87869781 87869856 -154794497 - MLT1G LTR MaLR -501 89 14 305 363 67 15 chr1 87870216 87870351 -154794002 + L2 LINE L2 3111 3252 -20 183 42 0 0 chr1 87870426 87870450 -154793903 + (CA)n Simple_repeat Simple_repeat 2 25 0 249 350 40 0 chr1 87870587 87870687 -154793666 + MIR SINE MIR 47 150 -112 1702 168 7 10 chr1 87870693 87871002 -154793351 + AluSx SINE Alu 5 312 0 3406 193 26 2 chr1 87871048 87871664 -154792689 + ERVL LTR ERVL 2981 3611 -2153 6086 94 1 21 chr1 87872531 87873435 -154790918 + L1PA13 LINE L1 5278 6163 0 2597 112 15 17 chr1 87874898 87875228 -154789125 - L1PA10 LINE L1 -4 6164 5834 2205 106 50 39 chr1 87875228 87875588 -154788765 - THE1B LTR MaLR 0 364 1 2597 112 15 17 chr1 87875588 87875668 -154788685 - L1PA10 LINE L1 -334 5834 5755 1173 148 4 4 chr1 87875718 87875948 -154788405 + L1P4 LINE L1 5269 5498 -665 704 296 14 28 chr1 87876872 87877088 -154787265 + MIR SINE MIR 46 258 -4 291 28 0 0 chr1 87882147 87882183 -154782170 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr1 87882255 87882277 -154782076 + (TA)n Simple_repeat Simple_repeat 2 23 0 23 33 0 0 chr1 87883211 87883241 -154781112 + AT_rich Low_complexity Low_complexity 1 30 0 9494 171 13 30 chr1 87885063 87887512 -154776841 - L1PA13 LINE L1 -2 6161 3738 1938 124 24 10 chr1 87887512 87887803 -154776550 + AluSx SINE Alu 1 295 -17 9494 171 13 30 chr1 87887803 87888068 -154776285 - L1PA13 LINE L1 -2425 3738 3470 21 0 0 0 chr1 87888674 87888695 -154775658 + AT_rich Low_complexity Low_complexity 1 21 0 449 345 50 32 chr1 87889841 87890183 -154774170 - L2 LINE L2 -459 2855 2508 370 367 106 4 chr1 87890259 87890485 -154773868 + L2 LINE L2 2729 2977 -337 202 349 0 30 chr1 87890713 87890779 -154773574 + L2 LINE L2 3242 3305 -8 232 212 91 0 chr1 87890779 87890845 -154773508 - MER103 DNA DNA -28 138 67 258 270 34 22 chr1 87890846 87890935 -154773418 + L1MC4 LINE L1 6614 6703 -1339 243 0 0 0 chr1 87890970 87890997 -154773356 + (CA)n Simple_repeat Simple_repeat 2 28 0 385 307 42 30 chr1 87891189 87891355 -154772998 + MIR SINE MIR 84 251 -11 2371 114 13 19 chr1 87892492 87892868 -154771485 + THE1C LTR MaLR 1 374 -1 4101 102 68 75 chr1 87892873 87893592 -154770761 + THE1C-int LTR MaLR 5 718 -862 * 4526 127 15 6 chr1 87893588 87894265 -154770088 + THE1C-int LTR MaLR 898 1580 0 2357 128 11 11 chr1 87894265 87894640 -154769713 + THE1C LTR MaLR 1 375 0 430 235 26 17 chr1 87894675 87894790 -154769563 - MLT1B LTR MaLR 0 390 275 260 346 75 35 chr1 87894858 87895257 -154769096 - ERVL LTR ERVL -1845 3919 3505 13554 26 0 0 chr1 87896640 87899015 -154765338 + L1PA4 LINE L1 3781 6155 0 198 290 48 32 chr1 87899558 87899620 -154764733 - L2 LINE L2 0 3313 3251 25 0 0 0 chr1 87899657 87899682 -154764671 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr1 87900832 87900875 -154763478 + AT_rich Low_complexity Low_complexity 1 43 0 438 299 70 29 chr1 87901375 87901616 -154762737 - L1ME1 LINE L1 -104 6062 5812 687 231 85 21 chr1 87901693 87902301 -154762052 - L1ME1 LINE L1 -872 5274 4502 24 32 0 0 chr1 87902366 87902397 -154761956 + AT_rich Low_complexity Low_complexity 1 31 0 467 292 49 21 chr1 87903011 87903155 -154761198 + L2 LINE L2 1114 1261 -2053 229 360 36 14 chr1 87903705 87903844 -154760509 + L2 LINE L2 1784 1925 -1389 715 181 7 14 chr1 87904038 87904182 -154760171 - FLAM_C SINE Alu 0 143 1 21 0 0 0 chr1 87904192 87904213 -154760140 + AT_rich Low_complexity Low_complexity 1 21 0 209 364 78 50 chr1 87904248 87904786 -154759567 + L2 LINE L2 2220 2772 -542 1065 239 175 4 chr1 87905312 87905824 -154758529 + MLT1E LTR MaLR 1 588 -5 1919 118 75 34 chr1 87907025 87907374 -154756979 - THE1B LTR MaLR 0 364 2 1092 37 0 0 chr1 87907375 87907509 -154756844 - THE1B-int LTR MaLR 0 1580 1447 * 1530 112 9 0 chr1 87907499 87907723 -154756630 - THE1B-int LTR MaLR -1354 226 1 2171 111 47 33 chr1 87907723 87908082 -154756271 - THE1B LTR MaLR 0 364 1 218 276 53 40 chr1 87910098 87910174 -154754179 - L2 LINE L2 -5 3267 3191 28 29 0 0 chr1 87911289 87911324 -154753029 + AT_rich Low_complexity Low_complexity 1 35 0 425 149 0 14 chr1 87911791 87911865 -154752488 - Tigger5 DNA MER2_type 0 2323 2251 199 277 0 60 chr1 87912117 87912200 -154752153 - MIR SINE MIR -1 261 184 * 365 316 79 0 chr1 87912190 87912304 -154752049 - L2 LINE L2 -4 3309 3187 180 0 0 0 chr1 87912473 87912493 -154751860 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 461 289 61 25 chr1 87912817 87913014 -154751339 - MIR SINE MIR -19 243 40 193 300 79 29 chr1 87913235 87913375 -154750978 + MIR SINE MIR 66 212 -50 226 356 39 10 chr1 87913532 87913636 -154750717 + LTR33 LTR ERVL 72 178 -343 269 265 15 0 chr1 87913708 87913776 -154750577 + LTR33 LTR ERVL 307 375 -146 207 0 0 0 chr1 87913855 87913878 -154750475 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 205 88 29 0 chr1 87913940 87913974 -154750379 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 49 71 0 0 chr1 87914323 87914421 -154749932 + AT_rich Low_complexity Low_complexity 1 98 0 437 313 127 19 chr1 87914445 87914966 -154749387 - L1M4 LINE L1 -1114 5032 4456 22 70 0 0 chr1 87915362 87915405 -154748948 + AT_rich Low_complexity Low_complexity 1 43 0 207 390 45 7 chr1 87915686 87915840 -154748513 + L2 LINE L2 2658 2817 -497 294 329 87 12 chr1 87916858 87917019 -154747334 + MIR SINE MIR 12 184 -78 331 242 33 50 chr1 87917079 87917199 -154747154 - MLT1K LTR MaLR -42 546 429 21 36 0 0 chr1 87917905 87917933 -154746420 + AT_rich Low_complexity Low_complexity 1 28 0 1134 135 193 0 chr1 87918182 87918389 -154745964 - MER57A LTR ERV1 0 403 157 836 151 12 6 chr1 87918392 87918552 -154745801 + LTR1B LTR ERV1 1 160 -625 * 1210 194 62 42 chr1 87918551 87919026 -154745327 + LTR1B LTR ERV1 301 826 0 635 200 86 8 chr1 87919031 87919194 -154745159 - MER57A LTR ERV1 -251 152 1 2178 107 0 19 chr1 87920779 87921088 -154743265 + AluSp SINE Alu 1 303 -10 2231 102 3 0 chr1 87922507 87922810 -154741543 + AluSq SINE Alu 1 304 -9 670 248 160 5 chr1 87924760 87924966 -154739387 - MIR SINE MIR -22 240 3 299 339 48 54 chr1 87925783 87925951 -154738402 + MER5A DNA MER1_type 2 168 -21 256 261 14 0 chr1 87926224 87926293 -154738060 + (TATG)n Simple_repeat Simple_repeat 3 72 0 303 200 31 15 chr1 87927465 87927530 -154736823 + MIR SINE MIR 116 181 -81 753 259 54 5 chr1 87927944 87928149 -154736204 + MER20 DNA MER1_type 1 215 -4 2008 230 29 83 chr1 87928634 87929130 -154735223 - L1M4 LINE L1 -2638 3508 3083 1224 203 35 74 chr1 87929130 87929406 -154734947 + AluJo SINE Alu 4 269 -33 2065 92 4 7 chr1 87929406 87929713 -154734640 - AluSp SINE Alu 0 318 13 1224 203 35 74 chr1 87929713 87929745 -154734608 + AluJo SINE Alu 269 301 -1 2008 230 29 83 chr1 87929745 87930171 -154734182 - L1M4 LINE L1 -3063 3083 2636 184 308 243 0 chr1 87930370 87930477 -154733876 - L3 LINE CR1 -448 1129 997 593 368 0 0 chr1 87930564 87930716 -154733637 + MER91A DNA MER1_type 9 160 -36 210 37 0 0 chr1 87930854 87930881 -154733472 + (A)n Simple_repeat Simple_repeat 1 27 0 228 135 0 0 chr1 87932371 87932408 -154731945 + (TA)n Simple_repeat Simple_repeat 1 37 0 * 341 102 17 0 chr1 87932407 87932466 -154731887 + (GA)n Simple_repeat Simple_repeat 2 61 0 758 291 14 5 chr1 87932923 87933143 -154731210 - MER58A DNA MER1_type -2 222 1 364 241 125 0 chr1 87934316 87934428 -154729925 - MIR SINE MIR -126 136 11 25 51 0 0 chr1 87934475 87934514 -154729839 + AT_rich Low_complexity Low_complexity 1 39 0 485 315 32 40 chr1 87934910 87935161 -154729192 - L2 LINE L2 -1 3312 3064 264 149 0 0 chr1 87935532 87935579 -154728774 + (TG)n Simple_repeat Simple_repeat 1 47 0 270 0 0 0 chr1 87936785 87936815 -154727538 + (CA)n Simple_repeat Simple_repeat 2 31 0 26 50 0 0 chr1 87937243 87937283 -154727070 + AT_rich Low_complexity Low_complexity 1 40 0 248 318 50 50 chr1 87937482 87937661 -154726692 - L2 LINE L2 -182 3090 2912 233 321 0 0 chr1 87937732 87937788 -154726565 - L2 LINE L2 -16 3256 3201 234 316 132 0 chr1 87939397 87939533 -154724820 - L2 LINE L2 0 3313 3160 382 366 26 42 chr1 87939891 87940197 -154724156 - L2 LINE L2 -537 2777 2477 219 318 16 56 chr1 87940535 87940661 -154723692 - L2 LINE L2 -8 3305 3185 380 292 104 28 chr1 87940683 87940933 -154723420 + L1ME LINE L1 5548 5816 -305 244 279 63 13 chr1 87941854 87941933 -154722420 - L2 LINE L2 -5 3308 3226 32 26 0 0 chr1 87942077 87942116 -154722237 + AT_rich Low_complexity Low_complexity 1 39 0 234 220 34 0 chr1 87943171 87943230 -154721123 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 2108 140 0 0 chr1 87943519 87943826 -154720527 - AluSx SINE Alu 0 312 6 551 261 97 6 chr1 87944120 87944296 -154720057 - MIR SINE MIR -6 256 65 203 379 0 90 chr1 87944379 87944556 -154719797 - L2 LINE L2 -108 3164 3004 243 61 0 0 chr1 87945721 87945754 -154718599 + (CA)n Simple_repeat Simple_repeat 2 34 0 4028 208 82 98 chr1 87945902 87946587 -154717766 + L1MC3 LINE L1 5668 6362 -1633 1837 146 20 17 chr1 87946587 87946724 -154717629 + AluSx SINE Alu 1 136 -176 2224 105 3 0 chr1 87946724 87947018 -154717335 + AluSg SINE Alu 1 295 -15 1837 146 20 17 chr1 87947018 87947175 -154717178 + AluSx SINE Alu 136 296 -16 4028 208 82 98 chr1 87947175 87947535 -154716818 + L1MC3 LINE L1 6362 6726 -1269 180 111 0 0 chr1 87947535 87947562 -154716791 + (TG)n Simple_repeat Simple_repeat 2 28 0 4028 208 82 98 chr1 87947562 87947648 -154716705 + L1MC3 LINE L1 6726 6812 -1183 1825 182 33 30 chr1 87947648 87948011 -154716342 + THE1B LTR MaLR 1 364 0 10575 117 18 0 chr1 87948011 87949559 -154714794 + THE1B-int LTR MaLR 4 1580 0 2021 146 30 28 chr1 87949559 87949922 -154714431 + THE1B LTR MaLR 1 364 0 4028 208 82 98 chr1 87949922 87950253 -154714100 + L1MC3 LINE L1 6810 7145 -850 1795 151 10 30 chr1 87950253 87950552 -154713801 + AluSx SINE Alu 3 295 -17 4028 208 82 98 chr1 87950552 87950568 -154713785 + L1MC3 LINE L1 7145 7160 -835 408 40 0 0 chr1 87950568 87950618 -154713735 + (TG)n Simple_repeat Simple_repeat 1 50 0 4028 208 82 98 chr1 87950618 87950857 -154713496 + L1MC3 LINE L1 7160 7401 -594 1931 142 0 0 chr1 87950857 87951171 -154713182 + AluSx SINE Alu 1 314 0 4028 208 82 98 chr1 87951171 87951769 -154712584 + L1MC3 LINE L1 7401 7994 -1 430 323 113 0 chr1 87952092 87952278 -154712075 - L2 LINE L2 -5 3308 3102 220 343 41 34 chr1 87952634 87952780 -154711573 - L2 LINE L2 -1312 2002 1856 296 298 0 0 chr1 87953809 87953913 -154710440 + T-rich Low_complexity Low_complexity 1 104 0 21 0 0 0 chr1 87954804 87954825 -154709528 + AT_rich Low_complexity Low_complexity 1 21 0 309 304 28 82 chr1 87956160 87956379 -154707974 + MIR3 SINE MIR 4 212 -44 1891 207 68 0 chr1 87957683 87958079 -154706274 - MSTA LTR MaLR -5 423 1 4286 153 53 79 chr1 87958199 87959295 -154705058 + MER11C LTR ERVK 1 1067 -4 335 353 16 22 chr1 87959782 87959966 -154704387 - LTR67 LTR ERVL -5 552 370 244 264 46 35 chr1 87960066 87960153 -154704200 - LTR67 LTR ERVL -371 186 99 534 65 195 0 chr1 87960225 87960302 -154704051 + MER11A LTR ERVK 252 343 -923 561 352 51 0 chr1 87960330 87960566 -154703787 - MIR SINE MIR -3 259 12 525 340 47 11 chr1 87965052 87965243 -154699110 + MIR SINE MIR 6 203 -59 432 312 32 7 chr1 87965449 87965603 -154698750 + MIR SINE MIR 99 256 -6 1052 214 11 4 chr1 87965703 87965979 -154698374 + L1M4 LINE L1 3080 3357 -2789 27 0 0 0 chr1 87966127 87966154 -154698199 + AT_rich Low_complexity Low_complexity 1 27 0 38 68 0 0 chr1 87966295 87966368 -154697985 + AT_rich Low_complexity Low_complexity 1 73 0 1983 127 55 25 chr1 87966805 87967166 -154697187 - THE1C LTR MaLR -3 372 1 8536 140 32 11 chr1 87967167 87968616 -154695737 - THE1C-int LTR MaLR -101 1479 3 1988 143 64 20 chr1 87968618 87968975 -154695378 - THE1C LTR MaLR 0 375 3 23 0 0 0 chr1 87969106 87969129 -154695224 + AT_rich Low_complexity Low_complexity 1 23 0 35 78 0 0 chr1 87969268 87969345 -154695008 + AT_rich Low_complexity Low_complexity 1 77 0 227 252 111 0 chr1 87969421 87969556 -154694797 + L1ME4a LINE L1 5968 6117 -4 236 362 197 7 chr1 87969827 87969979 -154694374 + MIR3 SINE MIR 7 187 -21 21 0 0 0 chr1 87970117 87970138 -154694215 + AT_rich Low_complexity Low_complexity 1 21 0 331 256 23 0 chr1 87970214 87970300 -154694053 + L1M4 LINE L1 4771 4858 -1288 23 0 0 0 chr1 87970365 87970388 -154693965 + AT_rich Low_complexity Low_complexity 1 23 0 2048 146 21 8 chr1 87970419 87970771 -154693582 + MLT1A1 LTR MaLR 8 365 0 2085 115 14 0 chr1 87970981 87971310 -154693043 + AluSg SINE Alu 1 333 0 408 226 43 0 chr1 87971343 87971458 -154692895 + L1MEc LINE L1 86 205 -6191 2146 284 65 37 chr1 87971491 87972345 -154692008 + L1MEc LINE L1 274 1179 -5217 1713 154 8 0 chr1 87972345 87972612 -154691741 - AluSx SINE Alu -21 291 23 2146 284 65 37 chr1 87972612 87973041 -154691312 + L1MEc LINE L1 1179 1594 -4802 681 224 141 68 chr1 87973041 87973081 -154691272 - MLT1A1 LTR MaLR 0 365 329 1872 133 60 38 chr1 87973081 87973448 -154690905 + THE1C LTR MaLR 1 375 0 681 224 141 68 chr1 87973448 87973573 -154690780 - MLT1A1 LTR MaLR -36 329 215 294 50 0 0 chr1 87973573 87973613 -154690740 + (CA)n Simple_repeat Simple_repeat 1 40 0 681 224 141 68 chr1 87973613 87973786 -154690567 - MLT1A1 LTR MaLR -150 215 1 1946 142 7 0 chr1 87973826 87974138 -154690215 - AluSx SINE Alu 0 314 1 1525 257 48 29 chr1 87974139 87974722 -154689631 + L1MEc LINE L1 1614 2207 -4189 2727 219 25 2 chr1 87974878 87975512 -154688841 - L1MB5 LINE L1 -8 6166 5518 624 263 0 12 chr1 87975555 87975726 -154688627 - L1ME2 LINE L1 -9 6155 5987 1726 237 77 22 chr1 87975743 87976720 -154687633 - L1ME2 LINE L1 -336 5828 4798 241 232 12 73 chr1 87976736 87976818 -154687535 + L1M4 LINE L1 4044 4120 -2026 2125 170 14 16 chr1 87976820 87977256 -154687097 + L1MA4A LINE L1 5860 6294 -9 184 286 196 30 chr1 87977308 87977441 -154686912 - L2 LINE L2 -6 3307 3153 764 270 95 5 chr1 87978722 87978933 -154685420 + MIR SINE MIR 15 244 -18 1992 141 27 35 chr1 87979192 87979568 -154684785 - THE1C LTR MaLR -2 373 1 238 333 0 0 chr1 87979660 87979738 -154684615 - MIR SINE MIR 0 262 185 23 33 0 0 chr1 87981891 87981921 -154682432 + AT_rich Low_complexity Low_complexity 1 30 0 339 311 67 30 chr1 87982027 87982162 -154682191 + MIR3 SINE MIR 16 155 -53 2814 0 0 0 chr1 87982197 87982497 -154681856 - AluYa5 SINE Alu -11 300 1 24 0 0 0 chr1 87982544 87982568 -154681785 + AT_rich Low_complexity Low_complexity 1 24 0 1683 214 33 0 chr1 87983303 87983639 -154680714 + MER7A DNA MER2_type 1 345 -1 427 288 53 15 chr1 87983828 87983960 -154680393 - MIR SINE MIR -83 179 43 2909 13 0 0 chr1 87984776 87985093 -154679260 + AluYb8 SINE Alu 1 317 -1 33 43 0 0 chr1 87985174 87985221 -154679132 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr1 87985980 87986005 -154678348 + AT_rich Low_complexity Low_complexity 1 25 0 228 143 0 0 chr1 87987313 87987355 -154676998 + (TC)n Simple_repeat Simple_repeat 1 42 0 235 284 18 107 chr1 87991759 87991928 -154672425 + MER5A DNA MER1_type 36 189 0 1615 210 24 39 chr1 87993819 87994026 -154670327 + MLT1A1 LTR MaLR 1 210 -218 2531 50 7 0 chr1 87994026 87994327 -154670026 - AluY SINE Alu -8 303 1 1615 210 24 39 chr1 87994327 87994488 -154669865 + MLT1A1 LTR MaLR 210 421 -7 23 0 0 0 chr1 87994720 87994743 -154669610 + AT_rich Low_complexity Low_complexity 1 23 0 272 148 49 12 chr1 87994814 87994895 -154669458 + (TA)n Simple_repeat Simple_repeat 1 84 0 1890 123 37 0 chr1 87995217 87995506 -154668847 + AluSg SINE Alu 1 299 0 1777 257 192 10 chr1 87996610 87997282 -154667071 + LTR50 LTR ERVL 2 795 0 2124 114 231 100 chr1 87997437 87998399 -154665954 + pTR5 LTR ERV1 63 2420 -18 7132 233 63 52 chr1 87998402 88000542 -154663811 + L1PA14 LINE L1 7 2638 -4946 2064 120 88 20 chr1 88000542 88000883 -154663470 + THE1B LTR MaLR 1 364 0 7132 233 63 52 chr1 88000883 88001471 -154662882 + L1PA14 LINE L1 2638 3218 -4366 1907 133 30 7 chr1 88001492 88001793 -154662560 - MLT2A2 LTR ERVL -144 309 2 9755 179 101 1 chr1 88001793 88004382 -154659971 + L1PA14 LINE L1 4923 7598 -1 1804 196 14 12 chr1 88004524 88004870 -154659483 + MLT1C LTR MaLR 1 347 -120 3770 151 96 56 chr1 88004891 88005441 -154658912 + MER4D LTR ERV1 1 360 -304 2174 125 3 3 chr1 88005441 88005745 -154658608 - AluSx SINE Alu -8 304 1 3770 151 96 56 chr1 88005745 88006063 -154658290 + MER4D LTR ERV1 360 664 0 395 153 0 14 chr1 88006064 88006136 -154658217 + MLT1C LTR MaLR 316 386 -4 581 323 47 4 chr1 88007372 88007604 -154656749 - MIR SINE MIR -6 256 15 958 58 14 7 chr1 88007834 88007972 -154656381 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 1879 120 45 0 chr1 88007978 88008244 -154656109 - AluSg SINE Alu -32 278 1 266 351 15 45 chr1 88008883 88009017 -154655336 + MIR3 SINE MIR 69 198 -10 189 268 0 0 chr1 88009731 88009787 -154654566 + (TA)n Simple_repeat Simple_repeat 1 56 0 259 98 0 0 chr1 88009790 88009831 -154654522 - MER4-int LTR ERV1 -5442 1156 1116 1673 238 28 22 chr1 88009834 88010377 -154653976 - MLT2F LTR ERVL -54 609 3 372 299 52 22 chr1 88010429 88010563 -154653790 - MIR SINE MIR -15 247 110 660 311 38 13 chr1 88010675 88010913 -154653440 - MIR SINE MIR -2 260 17 720 309 65 33 chr1 88011234 88011574 -154652779 - L1ME3A LINE L1 -232 5938 5567 2123 108 0 25 chr1 88011574 88011888 -154652465 + AluSx SINE Alu 1 306 -6 720 309 65 33 chr1 88011888 88012178 -154652175 - L1ME3A LINE L1 -603 5567 5288 22 56 0 0 chr1 88012329 88012365 -154651988 + AT_rich Low_complexity Low_complexity 1 36 0 2443 81 3 0 chr1 88012495 88012803 -154651550 + AluSp SINE Alu 1 309 -4 261 332 93 5 chr1 88012897 88013090 -154651263 - L1ME3A LINE L1 -2153 3993 3784 188 315 74 0 chr1 88014780 88014834 -154649519 + MIR SINE MIR 88 145 -117 349 295 36 9 chr1 88015956 88016068 -154648285 - MLT1H LTR MaLR -2 547 433 392 264 187 46 chr1 88016103 88016387 -154647966 - MLT1H LTR MaLR -223 326 3 243 88 0 0 chr1 88016649 88016683 -154647670 + (A)n Simple_repeat Simple_repeat 1 34 0 718 250 85 49 chr1 88016815 88017290 -154647063 + MER39 LTR ERV1 10 707 0 202 282 127 55 chr1 88018345 88018455 -154645898 + MIR SINE MIR 120 237 -25 226 277 73 58 chr1 88021961 88022098 -154642255 + L1ME LINE L1 5554 5692 -478 1765 171 10 3 chr1 88022188 88022493 -154641860 - AluJb SINE Alu -5 307 1 199 303 0 15 chr1 88023537 88023603 -154640750 + L2 LINE L2 3247 3311 -2 679 309 82 42 chr1 88025707 88026219 -154638134 - L2 LINE L2 -9 3304 2768 2445 213 36 51 chr1 88026380 88027066 -154637287 - L1ME1 LINE L1 -5 6161 5486 5503 177 40 8 chr1 88027094 88029108 -154635245 - L1MA9 LINE L1 0 6312 4242 205 149 43 0 chr1 88029150 88029197 -154635156 + (TTA)n Simple_repeat Simple_repeat 1 49 0 305 376 43 55 chr1 88030083 88030706 -154633647 - L2 LINE L2 -1 3271 2660 1053 286 91 36 chr1 88030764 88031421 -154632932 + L2 LINE L2 2607 3308 -5 21 36 0 0 chr1 88031682 88031710 -154632643 + AT_rich Low_complexity Low_complexity 1 28 0 205 245 0 20 chr1 88031905 88031954 -154632399 + CT-rich Low_complexity Low_complexity 2 49 0 268 367 3 11 chr1 88032124 88032235 -154632118 + MIR SINE MIR 33 144 -64 269 398 70 6 chr1 88032973 88033144 -154631209 + MIR3 SINE MIR 16 197 -11 23 0 0 0 chr1 88033328 88033351 -154631002 + AT_rich Low_complexity Low_complexity 1 23 0 183 309 18 0 chr1 88033984 88034039 -154630314 - L2 LINE L2 0 3272 3217 619 267 53 68 chr1 88034402 88034855 -154629498 - L1MC4 LINE L1 0 8042 7597 1120 78 0 12 chr1 88035672 88035839 -154628514 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 2171 113 0 0 chr1 88035967 88036258 -154628095 + AluSx SINE Alu 4 294 -18 1071 158 28 0 chr1 88036702 88036917 -154627436 + L1MA7 LINE L1 6068 6288 -3 21 57 0 0 chr1 88039197 88039232 -154625121 + AT_rich Low_complexity Low_complexity 1 35 0 507 250 131 30 chr1 88039810 88039978 -154624375 + MIR3 SINE MIR 21 205 -3 573 247 42 84 chr1 88040844 88041107 -154623246 - Charlie8 DNA MER1_type -2165 252 1 183 80 0 0 chr1 88041985 88042010 -154622343 + (TG)n Simple_repeat Simple_repeat 2 26 0 243 349 90 49 chr1 88042025 88042369 -154621984 - L2 LINE L2 -1 3312 2955 487 325 49 0 chr1 88042931 88043094 -154621259 - MIR SINE MIR -74 188 18 368 327 87 43 chr1 88043380 88043680 -154620673 + L1ME4a LINE L1 5593 5905 -216 409 257 0 35 chr1 88043690 88043803 -154620550 + MER31A LTR ERV1 349 457 -28 275 340 43 0 chr1 88044149 88044243 -154620110 + L2 LINE L2 3175 3272 0 1409 267 110 34 chr1 88044374 88044745 -154619608 + L1MC5 LINE L1 7193 7534 -427 351 0 0 0 chr1 88044745 88044784 -154619569 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 1409 267 110 34 chr1 88044784 88045094 -154619259 + L1MC5 LINE L1 7534 7926 -35 617 133 25 25 chr1 88045282 88045402 -154618951 - L1PB2 LINE L1 -2 6149 6030 353 87 58 52 chr1 88045407 88045580 -154618773 + (TA)n Simple_repeat Simple_repeat 1 174 0 379 107 48 50 chr1 88045591 88046120 -154618233 + (TA)n Simple_repeat Simple_repeat 1 528 0 417 56 50 67 chr1 88046148 88046327 -154618026 + (TA)n Simple_repeat Simple_repeat 1 176 0 2848 103 0 15 chr1 88046340 88046747 -154617606 - L1PB2 LINE L1 -130 6021 5621 1510 229 47 17 chr1 88047172 88047540 -154616813 + MLT2D LTR ERVL 1 357 -57 222 37 0 0 chr1 88047540 88047567 -154616786 + (CA)n Simple_repeat Simple_repeat 1 27 0 * 360 0 0 0 chr1 88047566 88047606 -154616747 + (TC)n Simple_repeat Simple_repeat 2 41 0 1510 229 47 17 chr1 88047567 88047639 -154616714 + MLT2D LTR ERVL 357 414 0 921 213 16 0 chr1 88048062 88048245 -154616108 - MLT1A2 LTR MaLR 0 374 189 212 245 0 0 chr1 88048261 88048314 -154616039 + GA-rich Low_complexity Low_complexity 2 54 0 340 181 19 105 chr1 88048314 88048419 -154615934 - MLT1A2 LTR MaLR -188 177 82 1108 148 34 111 chr1 88048425 88048590 -154615763 - AluYb8 SINE Alu -43 275 142 1022 40 0 0 chr1 88048590 88048714 -154615639 - L1PA3 LINE L1 -3 6152 6029 1108 148 34 111 chr1 88048714 88048845 -154615508 - AluYb8 SINE Alu -176 142 2 297 164 0 18 chr1 88048870 88048925 -154615428 - MLT1A2 LTR MaLR -320 54 1 201 94 0 0 chr1 88049140 88049172 -154615181 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 40 73 0 0 chr1 88049593 88049675 -154614678 + AT_rich Low_complexity Low_complexity 1 82 0 383 270 69 21 chr1 88049717 88049906 -154614447 + L1M4 LINE L1 2210 2407 -3739 333 333 34 23 chr1 88049987 88050164 -154614189 + L1M4 LINE L1 2564 2742 -3404 245 387 76 37 chr1 88050770 88051176 -154613177 + L2 LINE L2 2551 2972 -342 1547 194 3 14 chr1 88051741 88052061 -154612292 + AluJb SINE Alu 1 317 0 1355 193 96 24 chr1 88052682 88053199 -154611154 - LTR8A LTR ERV1 -1 726 123 208 167 56 0 chr1 88053243 88053297 -154611056 + (TTATA)n Simple_repeat Simple_repeat 3 59 0 26 0 0 0 chr1 88053346 88053372 -154610981 + AT_rich Low_complexity Low_complexity 1 26 0 403 131 190 44 chr1 88053373 88053510 -154610843 - LTR8A LTR ERV1 -570 157 1 407 348 17 11 chr1 88053514 88053692 -154610661 - L1MDa LINE L1 -4639 1490 1312 522 311 61 29 chr1 88053738 88054114 -154610239 - L1MDa LINE L1 -4868 1251 864 259 288 15 0 chr1 88054605 88054671 -154609682 - L2 LINE L2 -1 3312 3246 1871 154 13 13 chr1 88054784 88055095 -154609258 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr1 88055118 88055140 -154609213 + AT_rich Low_complexity Low_complexity 1 22 0 231 218 0 0 chr1 88055150 88055205 -154609148 + L1MC4 LINE L1 6648 6702 -1340 21 0 0 0 chr1 88055400 88055421 -154608932 + AT_rich Low_complexity Low_complexity 1 21 0 276 266 13 0 chr1 88055773 88055852 -154608501 - LTR33A LTR ERVL -4 519 440 279 323 35 16 chr1 88056078 88056263 -154608090 - LTR33A LTR ERVL -350 171 1 24 32 0 0 chr1 88057001 88057032 -154607321 + AT_rich Low_complexity Low_complexity 1 31 0 673 199 37 42 chr1 88059586 88059777 -154604576 + LTR41 LTR ERVL 1 190 -583 539 237 63 116 chr1 88059851 88060214 -154604139 + LTR41 LTR ERVL 423 766 -7 234 0 0 0 chr1 88060656 88060682 -154603671 + (CA)n Simple_repeat Simple_repeat 2 27 0 527 332 47 49 chr1 88061912 88062385 -154601968 - L2 LINE L2 -520 2794 2323 29 28 0 0 chr1 88062440 88062476 -154601877 + AT_rich Low_complexity Low_complexity 1 36 0 449 317 37 6 chr1 88064686 88064847 -154599506 + MIR SINE MIR 48 213 -49 293 268 21 21 chr1 88065993 88066090 -154598263 - MER91A DNA MER1_type -92 104 8 375 216 11 23 chr1 88066776 88066864 -154597489 + L2 LINE L2 3227 3313 0 505 295 151 30 chr1 88067406 88067738 -154596615 - MLT1L LTR MaLR -118 497 126 639 296 26 56 chr1 88068576 88068843 -154595510 + MIR SINE MIR 3 261 -1 1987 123 7 3 chr1 88068901 88069194 -154595159 + AluSx SINE Alu 1 294 -18 1645 149 30 0 chr1 88071826 88072095 -154592258 + AluSx SINE Alu 36 312 0 23 33 0 0 chr1 88072300 88072330 -154592023 + AT_rich Low_complexity Low_complexity 1 30 0 183 129 0 0 chr1 88072337 88072368 -154591985 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 232 294 69 40 chr1 88073535 88073810 -154590543 + HAL1 LINE L1 840 1122 -1385 584 319 47 31 chr1 88073810 88074064 -154590289 - MIR SINE MIR -2 260 3 451 296 123 38 chr1 88074084 88074425 -154589928 + HAL1 LINE L1 1424 1793 -714 192 152 0 0 chr1 88074435 88074468 -154589885 + GA-rich Low_complexity Low_complexity 4 36 0 4579 133 67 4 chr1 88074472 88075264 -154589089 - Tigger3b DNA MER2_type -389 842 1 2632 46 0 0 chr1 88075412 88075716 -154588637 + AluY SINE Alu 1 304 -7 821 129 8 15 chr1 88076216 88076348 -154588005 + L1MA4 LINE L1 5850 5980 -320 219 88 0 0 chr1 88076439 88076473 -154587880 + (CA)n Simple_repeat Simple_repeat 2 35 0 228 71 0 0 chr1 88076485 88076513 -154587840 + MLT2C2 LTR ERVL 437 464 0 914 213 16 0 chr1 88076936 88077119 -154587234 - MLT1A2 LTR MaLR 0 374 189 230 241 0 0 chr1 88077135 88077189 -154587164 + GA-rich Low_complexity Low_complexity 2 55 0 473 215 78 94 chr1 88077189 88077299 -154587054 - MLT1A2 LTR MaLR -186 188 81 1967 87 15 0 chr1 88077299 88077564 -154586789 - AluSp SINE Alu -43 270 2 473 215 78 94 chr1 88077564 88077644 -154586709 - MLT1A2 LTR MaLR -293 81 1 201 94 0 0 chr1 88077859 88077891 -154586462 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 40 59 0 0 chr1 88078267 88078335 -154586018 + AT_rich Low_complexity Low_complexity 1 68 0 361 289 63 21 chr1 88078426 88078616 -154585737 + L1M4 LINE L1 2210 2407 -3739 180 255 47 66 chr1 88079320 88079426 -154584927 + L2 LINE L2 2330 2433 -881 1582 190 41 8 chr1 88079426 88079636 -154584717 + L1MA9 LINE L1 5937 6166 -146 180 111 0 0 chr1 88079636 88079663 -154584690 + (CA)n Simple_repeat Simple_repeat 2 28 0 1582 190 41 8 chr1 88079663 88079816 -154584537 + L1MA9 LINE L1 6166 6312 0 212 247 25 74 chr1 88080167 88080248 -154584105 + MIR SINE MIR 73 149 -59 364 326 8 0 chr1 88080248 88080377 -154583976 + GA-rich Low_complexity Low_complexity 2 131 0 208 211 0 0 chr1 88080939 88080977 -154583376 + CT-rich Low_complexity Low_complexity 6 43 0 558 219 50 31 chr1 88081506 88081666 -154582687 - MLT1J1 LTR MaLR -278 168 6 294 280 50 0 chr1 88081656 88081756 -154582597 + MER117 DNA MER1_type 90 194 -3 * 197 182 0 0 chr1 88084651 88084684 -154579669 - MIR SINE MIR -131 77 45 2031 116 18 0 chr1 88086640 88086925 -154577428 - AluSx SINE Alu -22 290 1 22 35 0 0 chr1 88087717 88087746 -154576607 + AT_rich Low_complexity Low_complexity 1 29 0 459 65 0 0 chr1 88088016 88088078 -154576275 + Alu SINE Alu 1 62 -248 23 33 0 0 chr1 88138164 88138194 -154526159 + AT_rich Low_complexity Low_complexity 1 30 0 183 156 0 0 chr1 88138201 88138233 -154526120 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 1728 147 26 93 chr1 88138307 88138694 -154525659 + THE1B LTR MaLR 1 361 -3 304 176 61 27 chr1 88139013 88139161 -154525192 + (TA)n Simple_repeat Simple_repeat 2 154 0 567 288 78 66 chr1 88139374 88139721 -154524632 + L2 LINE L2 2899 3249 -64 5707 55 0 5 chr1 88139860 88141169 -154523184 - L1P LINE L1 -4495 1651 222 201 74 0 0 chr1 88141598 88141625 -154522728 + (TA)n Simple_repeat Simple_repeat 2 28 0 2299 84 0 3 chr1 88141697 88141995 -154522358 - AluSg SINE Alu -13 297 1 9062 168 16 10 chr1 88142263 88144009 -154520344 - L1 LINE L1 -958 5188 3432 4694 139 130 44 chr1 88144109 88145116 -154519237 + pTR5 LTR ERV1 928 2021 -417 287 296 10 0 chr1 88145120 88145218 -154519135 + LTR30 LTR ERV1 544 642 -80 1431 143 45 0 chr1 88145219 88145443 -154518910 + LTR12 LTR ERV1 480 713 -1 1266 159 18 7 chr1 88145443 88145719 -154518634 - L1 LINE L1 -2794 3352 3074 2283 80 17 0 chr1 88145866 88146167 -154518186 - AluY SINE Alu -5 306 1 264 125 0 18 chr1 88146170 88146226 -154518127 - MER5C DNA MER1_type -203 121 67 1340 192 56 122 chr1 88146398 88146898 -154517455 + MLT1C LTR MaLR 1 467 0 186 231 0 77 chr1 88146903 88146968 -154517385 - MER5B DNA MER1_type -45 133 74 22 35 0 0 chr1 88146985 88147014 -154517339 + AT_rich Low_complexity Low_complexity 1 29 0 521 257 51 3 chr1 88148725 88148869 -154515484 + MLT1J LTR MaLR 37 146 -300 23634 31 1 0 chr1 88149255 88152132 -154512221 - L1P LINE L1 -1606 4540 1660 5198 77 35 0 chr1 88152232 88152956 -154511397 + L1PA12 LINE L1 5419 6167 -1 27 62 0 0 chr1 88152956 88153004 -154511349 + AT_rich Low_complexity Low_complexity 1 48 0 29 0 0 0 chr1 88153824 88153853 -154510500 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr1 88154074 88154112 -154510241 + AT_rich Low_complexity Low_complexity 1 38 0 710 264 39 6 chr1 88155385 88155563 -154508790 - MER20 DNA MER1_type 0 219 36 283 326 67 0 chr1 88156849 88156938 -154507415 - L2 LINE L2 -5 3267 3173 218 349 60 12 chr1 88157457 88157540 -154506813 - MIR SINE MIR -146 116 30 1829 174 3 0 chr1 88157890 88158178 -154506175 + AluJb SINE Alu 6 294 -18 1700 103 0 0 chr1 88158536 88158779 -154505574 - HERVH LTR ERV1 -7470 243 1 2234 113 96 17 chr1 88158781 88159196 -154505157 - LTR7 LTR ERV1 -2 448 1 200 167 0 48 chr1 88159212 88159254 -154505099 + (CAAT)n Simple_repeat Simple_repeat 3 42 0 2153 246 36 8 chr1 88159478 88159978 -154504375 + LTR40a LTR ERVL 6 519 0 22 56 0 0 chr1 88162793 88162829 -154501524 + AT_rich Low_complexity Low_complexity 1 36 0 2042 131 3 0 chr1 88163141 88163432 -154500921 - AluSx SINE Alu -19 293 2 24 0 0 0 chr1 88165404 88165428 -154498925 + AT_rich Low_complexity Low_complexity 1 24 0 547 247 50 0 chr1 88167005 88167149 -154497204 + MER45A DNA AcHobo 9 171 -7 481 278 33 86 chr1 88167568 88167813 -154496540 + MIR SINE MIR 18 249 -13 330 26 0 0 chr1 88168764 88168803 -154495550 + (CA)n Simple_repeat Simple_repeat 1 39 0 307 316 149 0 chr1 88169659 88169833 -154494520 - MIR SINE MIR -10 252 53 2117 116 7 0 chr1 88171787 88172080 -154492273 - AluSx SINE Alu -15 297 3 42 57 0 0 chr1 88172971 88173041 -154491312 + AT_rich Low_complexity Low_complexity 1 70 0 388 314 79 38 chr1 88173944 88174285 -154490068 + L2 LINE L2 1937 2291 -1023 191 374 63 46 chr1 88174425 88174773 -154489580 + L2 LINE L2 2621 2974 -340 225 0 0 0 chr1 88175976 88176001 -154488352 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7498 26 4 0 chr1 88176001 88177487 -154486866 - L1PA3 LINE L1 -18 6137 4654 2286 246 16 11 chr1 88177588 88178203 -154486150 - L1 LINE L1 -3207 4358 3741 10518 196 23 8 chr1 88178204 88180146 -154484207 - L1 LINE L1 -5580 1985 14 579 180 148 0 chr1 88180149 88180277 -154484076 + MLT1A1-int LTR MaLR 1588 1734 -1 1233 242 107 3 chr1 88180284 88180610 -154483743 + MLT1A1 LTR MaLR 5 364 -1 181 329 51 13 chr1 88180632 88180711 -154483642 - MIR SINE MIR -158 104 23 470 228 43 15 chr1 88181057 88181188 -154483165 - MLT1C LTR MaLR -19 486 317 186 327 0 0 chr1 88181409 88181464 -154482889 - L2 LINE L2 0 3272 3218 22 35 0 0 chr1 88183205 88183234 -154481119 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 88183472 88183500 -154480853 + AT_rich Low_complexity Low_complexity 1 28 0 263 332 46 41 chr1 88184871 88185067 -154479286 - L2 LINE L2 0 3313 3117 7466 173 20 14 chr1 88185857 88187489 -154476864 - ERVL LTR ERVL -1013 4751 3069 272 182 0 0 chr1 88187490 88187545 -154476808 + L1 LINE L1 4271 4325 -1821 2132 193 45 5 chr1 88187623 88188049 -154476304 - ERVL LTR ERVL -2701 3063 2621 620 139 8 23 chr1 88188153 88188282 -154476071 + L1PB4 LINE L1 5667 5793 -363 2260 128 21 24 chr1 88188312 88188688 -154475665 + L1PB4 LINE L1 5776 6150 -6 23 33 0 0 chr1 88189041 88189071 -154475282 + AT_rich Low_complexity Low_complexity 1 30 0 294 29 0 0 chr1 88189271 88189306 -154475047 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 309 23 24 chr1 88189464 88189640 -154474713 + MLT1F LTR MaLR 1 194 -336 430 261 177 16 chr1 88189851 88190150 -154474203 + MLT1F LTR MaLR 270 595 0 585 337 91 29 chr1 88192336 88192754 -154471599 - L2 LINE L2 0 3272 2829 234 0 0 0 chr1 88193389 88193415 -154470938 + (TAA)n Simple_repeat Simple_repeat 2 27 0 375 195 35 11 chr1 88195128 88195215 -154469138 + GA-rich Low_complexity Low_complexity 3 91 0 917 116 23 12 chr1 88195216 88195389 -154468964 + A-rich Low_complexity Low_complexity 3 177 0 1256 186 124 13 chr1 88195423 88195730 -154468623 + MLT2C1 LTR ERVL 1 341 -56 258 195 35 0 chr1 88195756 88195843 -154468510 + (TATG)n Simple_repeat Simple_repeat 3 92 0 2015 125 0 36 chr1 88196036 88196341 -154468012 + AluSg SINE Alu 1 294 -16 218 220 0 20 chr1 88197772 88197822 -154466531 + GA-rich Low_complexity Low_complexity 4 52 0 238 301 26 18 chr1 88198570 88198683 -154465670 + MIR SINE MIR 79 192 -70 814 268 199 17 chr1 88198725 88199132 -154465221 - L2 LINE L2 0 3313 2833 3787 168 26 59 chr1 88200565 88201353 -154463000 - L1MB8 LINE L1 -16 6162 5349 225 0 0 0 chr1 88201353 88201378 -154462975 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2035 131 3 0 chr1 88201378 88201660 -154462693 - AluSp SINE Alu -30 283 1 3787 168 26 59 chr1 88201660 88201716 -154462637 - L1MB8 LINE L1 -827 5351 5345 1975 208 19 12 chr1 88203007 88203489 -154460864 - L1MB8 LINE L1 -775 5371 4887 682 163 9 17 chr1 88203842 88204069 -154460284 + CT-rich Low_complexity Low_complexity 1 225 0 180 0 0 0 chr1 88204197 88204217 -154460136 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 441 275 0 23 chr1 88205705 88205836 -154458517 + MIR SINE MIR 121 248 -14 302 313 104 25 chr1 88206302 88206465 -154457888 - MIR SINE MIR -55 207 32 274 331 35 14 chr1 88208304 88208446 -154455907 + L2 LINE L2 1780 1924 -1390 1058 359 98 24 chr1 88208446 88209316 -154455037 + L2 LINE L2 2040 2973 -341 250 346 8 53 chr1 88209521 88209654 -154454699 + L2 LINE L2 3186 3312 -1 2553 108 11 3 chr1 88209686 88210047 -154454306 + THE1B LTR MaLR 1 364 0 2673 127 5 5 chr1 88210156 88210557 -154453796 + MSTA-int LTR MaLR 1249 1649 -2 2342 143 36 12 chr1 88210559 88210977 -154453376 + MSTA LTR MaLR 1 428 0 268 424 11 5 chr1 88211000 88211184 -154453169 - L2 LINE L2 -217 3055 2871 886 166 0 7 chr1 88211235 88211386 -154452967 + MLT1A1 LTR MaLR 12 161 -204 417 204 92 0 chr1 88211418 88211516 -154452837 + MLT1A1 LTR MaLR 259 365 0 1261 131 36 5 chr1 88211580 88211802 -154452551 - L1MA5 LINE L1 -1 6299 6071 1746 155 97 29 chr1 88211802 88212112 -154452241 + MER1B DNA MER1_type 3 333 -6 565 192 0 8 chr1 88212118 88212238 -154452115 - L1MA5 LINE L1 -221 6079 5961 346 155 0 14 chr1 88212242 88212313 -154452040 + L1M2b LINE L1 211 280 -6929 23 68 0 0 chr1 88212967 88213011 -154451342 + AT_rich Low_complexity Low_complexity 1 44 0 611 112 0 31 chr1 88214507 88214605 -154449748 - AluSc SINE Alu -14 295 201 349 250 115 73 chr1 88214649 88214841 -154449512 - MIR SINE MIR -62 200 1 388 210 0 50 chr1 88214982 88215011 -154449342 + MER53 DNA DNA 2 31 -158 2315 68 48 0 chr1 88215011 88215303 -154449050 + AluSg SINE Alu 1 306 -4 388 210 0 50 chr1 88215303 88215373 -154448980 + MER53 DNA DNA 31 96 -93 226 295 0 0 chr1 88215551 88215612 -154448741 + MER53 DNA DNA 129 189 0 286 205 77 0 chr1 88216149 88216227 -154448126 + MIR SINE MIR 118 201 -61 1738 139 55 76 chr1 88216697 88217079 -154447274 - THE1C LTR MaLR -1 374 1 4749 120 61 12 chr1 88217080 88217830 -154446523 - THE1C-int LTR MaLR -1 1579 793 1557 125 250 3 chr1 88217931 88218243 -154446110 - THE1C-int LTR MaLR -1016 564 176 225 94 0 0 chr1 88218243 88218275 -154446078 - MSTA LTR MaLR -396 32 1 420 307 51 15 chr1 88218339 88218476 -154445877 + MIR SINE MIR 43 184 -78 1140 203 141 86 chr1 88218655 88219132 -154445221 - MLT1D LTR MaLR 0 505 3 320 343 132 57 chr1 88219302 88220067 -154444286 - L2 LINE L2 -4 3309 2476 2807 163 186 5 chr1 88220157 88220754 -154443599 - MER39 LTR ERV1 -2 705 1 238 301 137 34 chr1 88220855 88221001 -154443352 - MIR3 SINE MIR -14 194 34 591 307 102 0 chr1 88221149 88221432 -154442921 + LTR16C LTR ERVL 180 491 0 2193 54 4 11 chr1 88221535 88221811 -154442542 + AluY SINE Alu 29 302 -9 297 222 111 91 chr1 88223250 88223349 -154441004 - L2 LINE L2 -31 3282 3182 665 343 115 18 chr1 88223365 88223756 -154440597 - L2 LINE L2 -437 2877 2449 185 308 13 51 chr1 88224253 88224331 -154440022 + L2 LINE L2 3198 3272 0 27 0 0 0 chr1 88226184 88226211 -154438142 + AT_rich Low_complexity Low_complexity 1 27 0 284 376 67 51 chr1 88226225 88226480 -154437873 + L2 LINE L2 3005 3263 -9 2020 84 44 0 chr1 88226592 88226867 -154437486 + AluY SINE Alu 1 287 -24 468 51 0 0 chr1 88226867 88226926 -154437427 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 219 36 0 0 chr1 88227206 88227234 -154437119 + (CA)n Simple_repeat Simple_repeat 2 29 0 246 410 40 0 chr1 88228069 88228169 -154436184 - MIR SINE MIR -131 131 28 194 300 90 10 chr1 88230223 88230323 -154434030 - MIR SINE MIR -31 231 124 24 32 0 0 chr1 88230605 88230636 -154433717 + AT_rich Low_complexity Low_complexity 1 31 0 856 341 79 43 chr1 88231615 88232313 -154432040 + L2 LINE L2 1772 2494 -820 2534 161 13 13 chr1 88232323 88232770 -154431583 - Tigger3b DNA MER2_type 0 1231 785 1273 87 0 0 chr1 88232770 88232931 -154431422 - AluSp SINE Alu -16 297 137 3879 160 27 37 chr1 88232949 88233700 -154430653 - Tigger3b DNA MER2_type -488 743 1 196 255 0 0 chr1 88233808 88233855 -154430498 + L2 LINE L2 2670 2716 -598 1072 282 77 48 chr1 88233861 88234318 -154430035 - LTR16C LTR ERVL -4 487 18 3967 189 8 51 chr1 88234452 88235884 -154428469 - L1P5 LINE L1 -475 5681 4320 1828 194 19 0 chr1 88235883 88236243 -154428110 + L1P5 LINE L1 3959 4325 -1821 * 2031 92 4 4 chr1 88238441 88238735 -154425618 - AluSx SINE Alu 0 306 13 7555 22 5 4 chr1 88238910 88240399 -154423954 - L1PA4 LINE L1 -4 6151 4661 313 337 59 18 chr1 88241425 88241594 -154422759 + MER5A DNA MER1_type 2 177 -12 276 314 57 32 chr1 88241786 88241910 -154422443 - MIR SINE MIR -63 145 19 25 0 0 0 chr1 88242992 88243017 -154421336 + AT_rich Low_complexity Low_complexity 1 25 0 924 207 86 31 chr1 88243611 88243956 -154420397 - MSTD LTR MaLR 0 396 1 249 309 31 10 chr1 88244026 88244123 -154420230 + MIR SINE MIR 73 171 -91 1613 257 36 16 chr1 88244141 88244670 -154419683 + MLT1E2 LTR MaLR 24 626 0 265 340 62 48 chr1 88244728 88244937 -154419416 - L2 LINE L2 -4 3309 3098 1724 205 47 39 chr1 88245316 88245725 -154418628 + MLT2D LTR ERVL 1 412 -2 1494 198 14 3 chr1 88245850 88246143 -154418210 + AluJb SINE Alu 1 296 -16 3603 199 3 3 chr1 88246659 88247298 -154417055 + ERVL LTR ERVL 1649 2287 -3477 1443 210 102 104 chr1 88247444 88248191 -154416162 - LTR1B LTR ERV1 -81 745 1 22 0 0 0 chr1 88248726 88248748 -154415605 + AT_rich Low_complexity Low_complexity 1 22 0 228 296 68 76 chr1 88249004 88249136 -154415217 - L2 LINE L2 -1 3271 3141 4995 157 19 19 chr1 88249674 88251029 -154413324 + L1PA15 LINE L1 4463 5830 -335 2100 109 48 0 chr1 88251029 88251322 -154413031 + AluSc SINE Alu 1 307 -2 4995 157 19 19 chr1 88251322 88251659 -154412694 + L1PA15 LINE L1 5829 6165 0 311 329 81 34 chr1 88252434 88252583 -154411770 - MIR SINE MIR -38 224 69 210 325 91 0 chr1 88252664 88252741 -154411612 + MIR SINE MIR 47 130 -132 22 56 0 0 chr1 88253376 88253412 -154410941 + AT_rich Low_complexity Low_complexity 1 36 0 825 146 257 91 chr1 88253733 88254083 -154410270 + LTR37A LTR ERV1 19 426 0 436 323 32 7 chr1 88255227 88255382 -154408971 + MIR SINE MIR 26 184 -78 1554 191 0 33 chr1 88255656 88255959 -154408394 + AluJo SINE Alu 11 303 -9 22 113 0 0 chr1 88256807 88256913 -154407440 + AT_rich Low_complexity Low_complexity 1 106 0 882 196 18 0 chr1 88256913 88257081 -154407272 - AluJo/FRAM SINE Alu -6 306 136 530 172 0 0 chr1 88257081 88257168 -154407185 - AluJ/FLAM SINE Alu -225 87 1 2316 103 7 22 chr1 88257719 88258129 -154406224 - LTR7 LTR ERV1 -2 448 1 2349 96 53 13 chr1 88258129 88258504 -154405849 - HERVH LTR ERV1 0 7713 7324 1398 125 19 0 chr1 88258504 88258720 -154405633 - HERVH LTR ERV1 -1894 5819 5600 4264 134 18 1 chr1 88258721 88259372 -154404981 - HERVH LTR ERV1 -2564 5149 4488 3438 92 6 6 chr1 88259374 88259876 -154404477 - HERVH LTR ERV1 -3720 3993 3492 813 140 42 0 chr1 88259868 88260011 -154404342 - HERVH LTR ERV1 -4425 3288 3140 * 15509 103 11 15 chr1 88260005 88262601 -154401752 - HERVH LTR ERV1 -4726 2987 216 539 347 68 31 chr1 88262701 88263027 -154401326 + L2 LINE L2 2967 3304 -9 281 317 73 0 chr1 88263128 88263210 -154401143 + MIR SINE MIR 30 117 -145 417 86 0 86 chr1 88263250 88263425 -154400928 + (TA)n Simple_repeat Simple_repeat 2 161 0 462 90 0 85 chr1 88263438 88263615 -154400738 + (TA)n Simple_repeat Simple_repeat 2 163 0 423 114 8 69 chr1 88263630 88263883 -154400470 + (CATATA)n Simple_repeat Simple_repeat 1 237 0 256 103 17 52 chr1 88263898 88263956 -154400397 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 414 118 0 80 chr1 88263964 88264151 -154400202 + (TA)n Simple_repeat Simple_repeat 2 173 0 625 119 3 61 chr1 88264166 88264562 -154399791 + (TA)n Simple_repeat Simple_repeat 1 372 0 304 246 42 42 chr1 88264567 88264685 -154399668 - L1MC4 LINE L1 -1339 6703 6586 1536 183 7 40 chr1 88264799 88265099 -154399254 + AluJo SINE Alu 1 290 -22 23 0 0 0 chr1 88265101 88265124 -154399229 + AT_rich Low_complexity Low_complexity 1 23 0 198 303 174 0 chr1 88265176 88265308 -154399045 + MIR SINE MIR 56 210 -52 3547 249 39 13 chr1 88267040 88267904 -154396449 + MER45B DNA AcHobo 2 888 -152 23 54 0 0 chr1 88268052 88268089 -154396264 + AT_rich Low_complexity Low_complexity 1 37 0 31 44 0 0 chr1 88268162 88268207 -154396146 + AT_rich Low_complexity Low_complexity 1 45 0 252 163 0 0 chr1 88268249 88268298 -154396055 + L1MC4 LINE L1 6655 6703 -1339 781 298 5 0 chr1 88268422 88268610 -154395743 - L1MC4 LINE L1 -2148 5660 5472 225 328 72 52 chr1 88268908 88268982 -154395371 + L1MC/D LINE L1 5585 5656 -2152 2531 51 0 3 chr1 88268982 88269294 -154395059 - AluY SINE Alu 0 311 1 225 328 72 52 chr1 88269294 88269469 -154394884 + L1MC/D LINE L1 5656 5839 -1969 259 255 0 31 chr1 88269834 88269932 -154394421 + L1MC5 LINE L1 7835 7929 -32 303 28 0 0 chr1 88270181 88270217 -154394136 + (TG)n Simple_repeat Simple_repeat 2 37 0 763 221 0 7 chr1 88270646 88270800 -154393553 + FRAM SINE Alu 1 153 -23 230 157 39 39 chr1 88271439 88271490 -154392863 - L2 LINE L2 0 3313 3263 25 0 0 0 chr1 88271786 88271811 -154392542 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr1 88271866 88271909 -154392444 + AT_rich Low_complexity Low_complexity 1 43 0 11569 202 41 28 chr1 88271914 88274293 -154390060 - L1MA7 LINE L1 -12 6483 4137 2085 71 52 0 chr1 88274293 88274590 -154389763 - AluY SINE Alu 0 311 1 11569 202 41 28 chr1 88274590 88274645 -154389708 - L1MA7 LINE L1 -2358 4137 4084 2438 62 7 7 chr1 88274645 88274951 -154389402 - AluY SINE Alu -5 306 1 11569 202 41 28 chr1 88274951 88276390 -154387963 - L1MA7 LINE L1 -2411 4084 2544 2579 122 102 0 chr1 88276390 88276831 -154387522 - LTR19A LTR ERV1 0 486 1 11569 202 41 28 chr1 88276831 88277042 -154387311 - L1MA7 LINE L1 -3951 2544 2337 533 239 53 32 chr1 88277118 88277365 -154386988 - L1MA7 LINE L1 -4013 2337 2086 272 184 0 20 chr1 88277517 88277566 -154386787 + Tigger5 DNA MER2_type 1 48 -2275 227 217 67 0 chr1 88277542 88277602 -154386751 + Tigger5 DNA MER2_type 2251 2314 -9 * 2468 294 40 22 chr1 88277678 88277757 -154386596 - L1MA7 LINE L1 -5078 1203 1127 257 0 30 0 chr1 88277757 88277790 -154386563 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2468 294 40 22 chr1 88277790 88278994 -154385359 - L1MA7 LINE L1 -5154 1127 14 23 0 0 0 chr1 88279077 88279100 -154385253 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 88282107 88282136 -154382217 + AT_rich Low_complexity Low_complexity 1 29 0 400 344 71 9 chr1 88282908 88283120 -154381233 - MIR SINE MIR -1 261 37 186 143 0 0 chr1 88283367 88283402 -154380951 + (TG)n Simple_repeat Simple_repeat 2 36 0 1118 198 5 9 chr1 88285068 88285285 -154379068 - MER20 DNA MER1_type 0 219 4 4352 72 106 124 chr1 88285611 88286452 -154377901 + LTR12 LTR ERV1 1 826 0 25 51 0 0 chr1 88286636 88286675 -154377678 + AT_rich Low_complexity Low_complexity 1 39 0 2215 111 0 0 chr1 88287288 88287585 -154376768 - AluSx SINE Alu -6 306 10 230 316 60 30 chr1 88288335 88288468 -154375885 - MIR SINE MIR -111 151 15 27 49 0 0 chr1 88288738 88288779 -154375574 + AT_rich Low_complexity Low_complexity 1 41 0 1438 178 4 22 chr1 88288824 88289094 -154375259 - AluJb SINE Alu -19 293 29 203 327 0 18 chr1 88289288 88289343 -154375010 + MIR SINE MIR 14 67 -195 190 277 0 60 chr1 88289378 88289461 -154374892 + MIR SINE MIR 173 250 -12 569 337 11 5 chr1 88289596 88289780 -154374573 + L2 LINE L2 2592 2776 -538 3254 155 58 10 chr1 88289785 88290393 -154373960 + L1MB1 LINE L1 5531 6167 -1 26 30 0 0 chr1 88290393 88290426 -154373927 + AT_rich Low_complexity Low_complexity 1 33 0 418 248 34 128 chr1 88290445 88290772 -154373581 + L2 LINE L2 2894 3189 -124 21 0 0 0 chr1 88291049 88291070 -154373283 + AT_rich Low_complexity Low_complexity 1 21 0 2612 245 35 11 chr1 88292311 88294072 -154370281 + L1MA9 LINE L1 1430 7235 -37 498 269 33 16 chr1 88294054 88294236 -154370117 + L1M1 LINE L1 2896 3080 -4485 * 200 114 0 29 chr1 88295466 88295501 -154368852 + (CATA)n Simple_repeat Simple_repeat 3 36 0 529 302 93 40 chr1 88295883 88296304 -154368049 + MER65A LTR ERV1 3 445 0 2862 85 65 34 chr1 88296316 88296789 -154367564 - LTR21A LTR ERV1 -17 488 1 412 316 7 26 chr1 88297363 88297518 -154366835 - MER54B LTR ERVL -547 246 95 1928 214 26 28 chr1 88297612 88298042 -154366311 - MSTB1 LTR MaLR -1 431 3 328 244 30 107 chr1 88298044 88298212 -154366141 + LTR23-int LTR ERV1 718 872 -3999 246 32 0 0 chr1 88298849 88298880 -154365473 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 514 264 0 14 chr1 88298884 88299032 -154365321 + LTR23-int LTR ERV1 860 1005 -4118 392 280 217 10 chr1 88299032 88299239 -154365114 + MER34C LTR ERV1 181 430 -155 283 266 36 0 chr1 88299253 88299352 -154365001 + LTR23-int LTR ERV1 1096 1180 -3691 221 178 22 0 chr1 88299358 88299403 -154364950 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 316 248 3 33 chr1 88299419 88299548 -154364805 + LTR23-int LTR ERV1 1510 2987 -2959 416 245 101 27 chr1 88299745 88299873 -154364480 + LTR23-int LTR ERV1 1725 1761 -3175 2125 104 3 38 chr1 88299873 88300189 -154364164 - AluSx SINE Alu -7 305 1 416 245 101 27 chr1 88300189 88300377 -154363976 + LTR23-int LTR ERV1 1761 1934 -3002 * 632 279 60 35 chr1 88300372 88300891 -154363462 + LTR23-int LTR ERV1 1557 3153 -1727 1369 225 48 7 chr1 88300892 88301250 -154363103 - MER47B DNA MER2_type 0 418 2 1964 202 145 36 chr1 88301293 88302011 -154362342 + LTR23-int LTR ERV1 2491 3286 -1650 1036 259 77 3 chr1 88303131 88303455 -154360898 + LTR23-int LTR ERV1 4214 4561 -310 263 301 0 0 chr1 88303683 88303756 -154360597 + L1MEd LINE L1 593 665 -5454 410 294 80 46 chr1 88303947 88304297 -154360056 + L1MEd LINE L1 896 1257 -4862 318 344 65 16 chr1 88304301 88304487 -154359866 + HAL1 LINE L1 1373 1567 -940 507 290 12 35 chr1 88304580 88304749 -154359604 + FRAM SINE Alu 1 165 -1 21 0 0 0 chr1 88304839 88304860 -154359493 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr1 88305141 88305163 -154359190 + (T)n Simple_repeat Simple_repeat 1 22 0 620 144 39 100 chr1 88305711 88305891 -154358462 - Charlie5 DNA MER1_type -27 2585 2417 205 344 0 0 chr1 88306401 88306462 -154357891 + GA-rich Low_complexity Low_complexity 4 64 0 305 325 66 40 chr1 88306662 88306813 -154357540 + L2 LINE L2 3116 3270 -2 282 267 12 23 chr1 88306892 88306978 -154357375 + MIR3 SINE MIR 118 202 -6 30 27 0 0 chr1 88307245 88307282 -154357071 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr1 88307334 88307372 -154356981 + AT_rich Low_complexity Low_complexity 1 38 0 1907 142 94 25 chr1 88308684 88309079 -154355274 + MSTA LTR MaLR 5 426 -2 888 251 64 12 chr1 88309085 88309336 -154355017 - MLT1C LTR MaLR 0 467 204 314 158 20 178 chr1 88309420 88309495 -154354858 - MLT1C LTR MaLR -420 85 28 1862 139 100 77 chr1 88309495 88309934 -154354419 - LTR47A LTR ERVL -3 449 1 314 158 20 178 chr1 88309934 88309959 -154354394 - MLT1C LTR MaLR -477 28 1 337 284 20 10 chr1 88310857 88310959 -154353394 + CT-rich Low_complexity Low_complexity 4 106 0 22 0 0 0 chr1 88312437 88312459 -154351894 + AT_rich Low_complexity Low_complexity 1 22 0 2242 94 7 3 chr1 88313111 88313408 -154350945 + AluSg SINE Alu 1 298 -12 282 326 61 38 chr1 88313455 88313722 -154350631 + LTR33 LTR ERVL 64 365 -156 404 356 106 13 chr1 88313732 88314035 -154350318 - LTR16A LTR ERVL 0 450 120 327 244 22 0 chr1 88314149 88314239 -154350114 + LTR33 LTR ERVL 406 497 -24 2109 134 7 0 chr1 88314289 88314588 -154349765 - AluSx SINE Alu -11 301 1 5523 93 59 4 chr1 88314664 88315447 -154348906 + LTR12 LTR ERV1 1 826 0 1063 68 0 0 chr1 88315447 88315580 -154348773 + LTR12 LTR ERV1 582 714 0 295 305 106 14 chr1 88315580 88315721 -154348632 + MIR SINE MIR 95 248 -14 1790 98 73 38 chr1 88315783 88316070 -154348283 - AluY SINE Alu -14 297 1 2217 100 0 25 chr1 88316084 88316403 -154347950 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 88317993 88318015 -154346338 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chr1 88318031 88318066 -154346287 + (CA)n Simple_repeat Simple_repeat 2 36 0 697 248 35 49 chr1 88319163 88319389 -154344964 + MER58A DNA MER1_type 1 223 -1 222 128 0 0 chr1 88319831 88319870 -154344483 + (TA)n Simple_repeat Simple_repeat 1 39 0 2224 66 4 0 chr1 88321195 88321468 -154342885 + AluY SINE Alu 7 280 -31 3663 253 56 1 chr1 88321744 88322640 -154341713 + MER45B DNA AcHobo 2 946 -94 267 203 0 0 chr1 88323433 88323492 -154340861 + (TA)n Simple_repeat Simple_repeat 1 59 0 261 0 0 0 chr1 88323522 88323551 -154340802 + (CA)n Simple_repeat Simple_repeat 2 30 0 803 222 70 93 chr1 88323694 88324050 -154340303 - LTR37B LTR ERV1 0 468 121 583 239 54 86 chr1 88324055 88324165 -154340188 - MER58C DNA MER1_type -2205 215 114 1032 154 21 21 chr1 88324165 88324353 -154340000 - L1MB1 LINE L1 -1 6167 5980 583 239 54 86 chr1 88324353 88324464 -154339889 - MER58C DNA MER1_type -2306 114 1 408 260 19 0 chr1 88324472 88324576 -154339777 - LTR37B LTR ERV1 -362 106 1 269 241 70 96 chr1 88325257 88325444 -154338909 - LOR1-int LTR ERV1 -2653 5467 5286 26 30 0 0 chr1 88326078 88326111 -154338242 + AT_rich Low_complexity Low_complexity 1 33 0 949 224 94 82 chr1 88326891 88327316 -154337037 - MLT1C LTR MaLR -4 463 34 1675 125 94 0 chr1 88327344 88327600 -154336753 - AluSg SINE Alu -30 280 1 21 0 0 0 chr1 88327600 88327621 -154336732 + AT_rich Low_complexity Low_complexity 1 21 0 197 62 0 31 chr1 88328640 88328672 -154335681 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chr1 88328735 88328758 -154335595 + AT_rich Low_complexity Low_complexity 1 23 0 215 213 0 0 chr1 88329229 88329276 -154335077 + GA-rich Low_complexity Low_complexity 2 48 0 1380 197 49 59 chr1 88329456 88329929 -154334424 - LTR37B LTR ERV1 0 468 1 5849 108 2 8 chr1 88330522 88331403 -154332950 + HERVH LTR ERV1 2112 2987 -4726 762 166 41 0 chr1 88331397 88331542 -154332811 + HERVH LTR ERV1 3140 3290 -4423 * 3401 99 4 6 chr1 88331532 88332035 -154332318 + HERVH LTR ERV1 3492 3993 -3720 4321 143 1 1 chr1 88332037 88332699 -154331654 + HERVH LTR ERV1 4488 5149 -2564 1314 122 23 14 chr1 88332696 88332917 -154331436 + HERVH LTR ERV1 5597 5819 -1894 * 2446 88 48 13 chr1 88332917 88333294 -154331059 + HERVH LTR ERV1 7324 7713 0 2570 92 109 0 chr1 88333294 88333698 -154330655 + LTR7 LTR ERV1 1 448 -2 1380 197 49 59 chr1 88334506 88334979 -154329374 + LTR37B LTR ERV1 1 468 0 215 213 0 0 chr1 88335159 88335206 -154329147 + CT-rich Low_complexity Low_complexity 2 48 0 23 0 0 0 chr1 88335677 88335700 -154328653 + AT_rich Low_complexity Low_complexity 1 23 0 197 62 0 31 chr1 88335763 88335795 -154328558 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 21 0 0 0 chr1 88336814 88336835 -154327518 + AT_rich Low_complexity Low_complexity 1 21 0 1471 107 54 0 chr1 88336835 88337040 -154327313 + AluSg SINE Alu 1 216 -94 760 239 70 23 chr1 88337053 88337312 -154327041 + LTR37B LTR ERV1 198 468 0 261 0 0 0 chr1 88337455 88337484 -154326869 + (TG)n Simple_repeat Simple_repeat 2 30 0 267 203 0 0 chr1 88337514 88337573 -154326780 + (TA)n Simple_repeat Simple_repeat 2 60 0 3663 253 56 1 chr1 88338366 88339262 -154325091 - MER45B DNA AcHobo -94 946 2 2224 66 4 0 chr1 88339536 88339809 -154324544 - AluY SINE Alu -31 280 7 222 128 0 0 chr1 88341134 88341173 -154323180 + (TA)n Simple_repeat Simple_repeat 2 40 0 13765 96 12 25 chr1 88341374 88343500 -154320853 + HERVH LTR ERV1 148 2244 -5469 199 238 0 0 chr1 88343857 88343899 -154320454 + MIR SINE MIR 211 252 -10 297 0 0 0 chr1 88345158 88345191 -154319162 + (CA)n Simple_repeat Simple_repeat 2 34 0 224 287 172 16 chr1 88345272 88345394 -154318959 + L2 LINE L2 2715 2855 -459 306 287 87 9 chr1 88345434 88345549 -154318804 - MIR SINE MIR -3 259 136 393 249 138 15 chr1 88345580 88345715 -154318638 - MIR SINE MIR -46 162 18 207 380 36 51 chr1 88347562 88347836 -154316517 + L2 LINE L2 2848 3117 -155 30 69 0 0 chr1 88347985 88348043 -154316310 + AT_rich Low_complexity Low_complexity 1 58 0 32 43 0 0 chr1 88349588 88349634 -154314719 + AT_rich Low_complexity Low_complexity 1 46 0 1582 206 39 34 chr1 88350270 88350658 -154313695 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr1 88351607 88351628 -154312725 + AT_rich Low_complexity Low_complexity 1 21 0 369 294 76 33 chr1 88351905 88352089 -154312264 - MLT1K LTR MaLR -19 569 378 2746 102 3 0 chr1 88353452 88353815 -154310538 - THE1B LTR MaLR 0 364 1 327 49 0 0 chr1 88353848 88353889 -154310464 + (TG)n Simple_repeat Simple_repeat 2 42 0 1845 111 4 4 chr1 88354145 88354406 -154309947 - AluSc SINE Alu -48 261 1 2367 216 41 4 chr1 88355107 88355620 -154308733 - MER34 LTR ERV1 0 542 11 226 304 311 0 chr1 88356013 88356148 -154308205 - MER5B DNA MER1_type 0 178 2 468 247 98 50 chr1 88356751 88357040 -154307313 + L1ME3A LINE L1 3201 3508 -2638 395 301 43 25 chr1 88357122 88357404 -154306949 + L1ME3A LINE L1 3690 3976 -2170 261 269 200 24 chr1 88357391 88357563 -154306790 + L1ME3A LINE L1 5470 5610 -554 * 735 197 79 22 chr1 88357563 88357741 -154306612 - MER5A DNA MER1_type 0 189 2 261 269 200 24 chr1 88357741 88357939 -154306414 + L1ME3A LINE L1 5610 5907 -257 886 341 174 36 chr1 88358798 88359766 -154304587 - L3 LINE CR1 -264 1313 213 285 308 86 17 chr1 88360112 88360229 -154304124 + MLT1K LTR MaLR 395 519 -69 26 74 0 0 chr1 88360647 88360701 -154303652 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr1 88360801 88360823 -154303530 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 88362110 88362140 -154302213 + AT_rich Low_complexity Low_complexity 1 30 0 258 240 31 21 chr1 88362608 88362704 -154301649 + (TA)n Simple_repeat Simple_repeat 2 98 0 25 0 0 0 chr1 88362963 88362988 -154301365 + AT_rich Low_complexity Low_complexity 1 25 0 36 23 0 0 chr1 88363441 88363484 -154300869 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr1 88363507 88363537 -154300816 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr1 88363570 88363603 -154300750 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr1 88363780 88363816 -154300537 + AT_rich Low_complexity Low_complexity 1 36 0 346 111 0 0 chr1 88364123 88364177 -154300176 - L1MB2 LINE L1 -32 6139 6086 13502 146 32 9 chr1 88364177 88366425 -154297928 - Tigger1 DNA MER2_type 0 2418 118 312 276 25 86 chr1 88366506 88366627 -154297726 - L1M3d LINE L1 -5738 153 43 1817 145 57 0 chr1 88366627 88366910 -154297443 - AluSx SINE Alu -13 299 1 312 276 25 86 chr1 88366910 88366951 -154297402 - L1M3d LINE L1 -5848 43 1 263 333 0 10 chr1 88366950 88367046 -154297307 + L1M4 LINE L1 2675 2769 -3377 * 404 286 91 52 chr1 88367101 88367464 -154296889 + L1M4 LINE L1 2821 3197 -2949 331 104 0 0 chr1 88367484 88367532 -154296821 + MADE1 DNA Mariner 33 80 0 210 37 0 0 chr1 88367664 88367691 -154296662 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 263 269 26 18 chr1 88367694 88367816 -154296537 + MIR SINE MIR 21 142 -66 219 114 0 0 chr1 88367842 88367877 -154296476 + (GA)n Simple_repeat Simple_repeat 2 36 0 256 290 152 14 chr1 88367998 88368143 -154296210 + MIR SINE MIR 49 213 -49 2491 53 3 0 chr1 88369160 88369464 -154294889 + AluY SINE Alu 1 305 -6 1015 247 52 11 chr1 88369852 88370123 -154294230 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr1 88370126 88370147 -154294206 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 323 169 0 26 chr1 88371194 88371271 -154293082 + (CATATA)n Simple_repeat Simple_repeat 5 79 0 547 318 79 0 chr1 88371392 88371606 -154292747 - MIR SINE MIR -28 234 4 1102 187 23 9 chr1 88372444 88372663 -154291690 + AluJb SINE Alu 91 312 0 26 0 0 0 chr1 88372834 88372860 -154291493 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 88373034 88373055 -154291298 + AT_rich Low_complexity Low_complexity 1 21 0 353 242 30 85 chr1 88373348 88373513 -154290840 + L2 LINE L2 1620 1775 -1539 475 153 99 7 chr1 88373525 88373675 -154290678 - HsTC2 DNA Tc2 -1 1897 1737 395 257 27 75 chr1 88373684 88373787 -154290566 - HsTC2 DNA Tc2 -1720 178 86 2492 72 0 0 chr1 88373787 88374093 -154290260 - AluY SINE Alu -5 306 1 395 257 27 75 chr1 88374093 88374176 -154290177 - HsTC2 DNA Tc2 -1812 86 1 2147 303 69 52 chr1 88374177 88375193 -154289160 + L2 LINE L2 1791 2829 -484 189 0 0 0 chr1 88375193 88375214 -154289139 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2147 303 69 52 chr1 88375214 88375450 -154288903 + L2 LINE L2 2829 3060 -253 379 0 0 0 chr1 88375450 88375492 -154288861 + (TTTA)n Simple_repeat Simple_repeat 1 176 0 2057 129 7 0 chr1 88375492 88375787 -154288566 - AluSg SINE Alu -1 340 3 564 334 138 26 chr1 88375990 88376448 -154287905 + MLT1H LTR MaLR 41 549 0 316 320 10 19 chr1 88376449 88376552 -154287801 - MIR SINE MIR -151 111 10 279 294 120 0 chr1 88376651 88376743 -154287610 - MER94 DNA DNA 0 134 32 24 85 0 0 chr1 88377356 88377415 -154286938 + AT_rich Low_complexity Low_complexity 1 59 0 2244 131 26 3 chr1 88377418 88377807 -154286546 - L1MA9 LINE L1 0 6312 5915 234 0 0 0 chr1 88378010 88378036 -154286317 + (TA)n Simple_repeat Simple_repeat 1 26 0 216 86 0 0 chr1 88378035 88378070 -154286283 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 1288 269 119 38 chr1 88379034 88379588 -154284765 + L1ME3A LINE L1 5558 6156 -14 235 326 11 0 chr1 88380173 88380268 -154284085 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 26 50 0 0 chr1 88380467 88380507 -154283846 + AT_rich Low_complexity Low_complexity 1 40 0 284 299 8 68 chr1 88380535 88380652 -154283701 + L2 LINE L2 3163 3272 0 22 0 0 0 chr1 88380852 88380874 -154283479 + AT_rich Low_complexity Low_complexity 1 22 0 1574 218 61 11 chr1 88381291 88381668 -154282685 - MSTD LTR MaLR 0 396 1 1621 212 59 0 chr1 88381980 88382301 -154282052 + MER2 DNA MER2_type 6 345 0 1982 130 3 7 chr1 88382665 88382950 -154281403 - AluSc SINE Alu -23 286 3 198 118 0 0 chr1 88383037 88383071 -154281282 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 999 289 162 53 chr1 88383358 88384669 -154279684 + L2 LINE L2 1746 3313 0 7763 61 0 1 chr1 88385806 88387349 -154277004 - L1PA5 LINE L1 -256 5898 4357 4749 113 1 0 chr1 88387338 88388047 -154276306 + L1P LINE L1 2514 3223 -2923 * 993 323 44 31 chr1 88388147 88388605 -154275748 - L2 LINE L2 -2219 1095 632 26 0 0 0 chr1 88388605 88388631 -154275722 + AT_rich Low_complexity Low_complexity 1 26 0 38 22 0 0 chr1 88388894 88388939 -154275414 + AT_rich Low_complexity Low_complexity 1 45 0 325 238 84 104 chr1 88389651 88389853 -154274500 + L2 LINE L2 3116 3313 0 3386 210 58 18 chr1 88392469 88394098 -154270255 + L1MB3 LINE L1 2289 3852 -2331 3386 158 65 6 chr1 88394098 88394739 -154269614 + L1MB3 LINE L1 5505 6183 0 892 329 51 16 chr1 88394842 88395216 -154269137 + L2 LINE L2 1756 2142 -1172 325 226 0 69 chr1 88395359 88395461 -154268892 + L1MC4 LINE L1 6610 6704 -1338 271 315 19 0 chr1 88395467 88395575 -154268778 - L1MEc LINE L1 -4328 2068 1959 254 178 0 0 chr1 88395599 88395644 -154268709 + L1MC4 LINE L1 6659 6703 -1339 309 89 0 0 chr1 88395649 88395694 -154268659 + (CA)n Simple_repeat Simple_repeat 1 45 0 733 264 87 15 chr1 88395792 88396086 -154268267 - L2 LINE L2 -645 2669 2311 484 353 96 16 chr1 88396107 88396481 -154267872 + L1MEc LINE L1 43 446 -5950 290 292 14 29 chr1 88396898 88397107 -154267246 + L1MEc LINE L1 783 988 -5217 275 176 44 0 chr1 88397113 88397181 -154267172 + Charlie1 DNA MER1_type 1602 1672 -1089 390 351 153 8 chr1 88397195 88397492 -154266861 + L2 LINE L2 2745 3096 -217 261 0 0 0 chr1 88398360 88398389 -154265964 + (CA)n Simple_repeat Simple_repeat 2 30 0 242 116 23 0 chr1 88398424 88398467 -154265886 + (TA)n Simple_repeat Simple_repeat 2 45 0 3374 215 66 27 chr1 88399068 88399951 -154264402 + Charlie1a DNA MER1_type 1 917 -538 374 266 35 65 chr1 88399959 88400128 -154264225 - MLT1E-int LTR MaLR -1561 174 11 1758 236 106 42 chr1 88400143 88400693 -154263660 - MLT1E LTR MaLR -8 585 1 1892 145 101 28 chr1 88400931 88401561 -154262792 - LTR1 LTR ERV1 0 785 1 694 81 0 0 chr1 88401619 88401718 -154262635 - AluY SINE Alu -10 301 203 204 216 0 0 chr1 88401905 88401956 -154262397 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 512 53 53 0 chr1 88402414 88402490 -154261863 - MADE1 DNA Mariner 0 80 1 1456 225 77 3 chr1 88402599 88402923 -154261430 + MER7A DNA MER2_type 1 346 0 1944 206 23 5 chr1 88402990 88403379 -154260974 - MLT2C2 LTR ERVL -68 396 1 220 289 94 94 chr1 88403831 88403959 -154260394 + L2 LINE L2 2933 3060 -212 189 0 0 0 chr1 88404048 88404069 -154260284 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 331 301 49 24 chr1 88404118 88404241 -154260112 + MER115 DNA AcHobo 1 126 -567 683 253 107 96 chr1 88404297 88404681 -154259672 + MER115 DNA AcHobo 249 636 -57 22 56 0 0 chr1 88405869 88405905 -154258448 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 88406266 88406301 -154258052 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr1 88406368 88406412 -154257941 + AT_rich Low_complexity Low_complexity 1 44 0 6320 196 32 36 chr1 88407401 88408697 -154255656 + L1MC3 LINE L1 6282 7572 -213 1078 187 49 113 chr1 88408697 88409087 -154255266 - MLT1A1 LTR MaLR 0 365 1 6320 196 32 36 chr1 88409087 88409301 -154255052 + L1MC3 LINE L1 7572 7785 0 22 0 0 0 chr1 88409517 88409539 -154254814 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr1 88409714 88409745 -154254608 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr1 88410506 88410535 -154253818 + AT_rich Low_complexity Low_complexity 1 29 0 1638 224 53 8 chr1 88411003 88411382 -154252971 - MSTD LTR MaLR 0 396 1 195 69 0 0 chr1 88411396 88411425 -154252928 + (T)n Simple_repeat Simple_repeat 1 29 0 2191 115 0 0 chr1 88412201 88412497 -154251856 + AluSg SINE Alu 1 296 -14 436 257 171 49 chr1 88412606 88412663 -154251690 - MLT1H LTR MaLR -8 547 498 2528 30 0 7 chr1 88412663 88412961 -154251392 + AluY SINE Alu 1 296 -15 436 257 171 49 chr1 88412961 88413338 -154251015 - MLT1H LTR MaLR -57 498 76 2587 45 0 0 chr1 88415036 88415345 -154249008 - AluY SINE Alu -2 309 1 594 267 6 17 chr1 88416790 88416966 -154247387 - MER45A DNA AcHobo -4 174 1 27 62 0 0 chr1 88417566 88417614 -154246739 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr1 88417650 88417678 -154246675 + AT_rich Low_complexity Low_complexity 1 28 0 982 241 90 54 chr1 88418031 88418812 -154245541 - L1MD3 LINE L1 -6 7989 7076 331 314 7 20 chr1 88418989 88419142 -154245211 + GA-rich Low_complexity Low_complexity 3 153 0 396 0 0 0 chr1 88419163 88419207 -154245146 + (TA)n Simple_repeat Simple_repeat 2 45 0 2505 65 0 0 chr1 88419207 88419513 -154244840 - AluY SINE Alu -5 306 1 34 79 0 0 chr1 88420826 88420902 -154243451 + AT_rich Low_complexity Low_complexity 1 76 0 282 179 13 51 chr1 88420949 88421027 -154243326 + MER116 DNA Mariner 6 80 0 21 57 0 0 chr1 88421157 88421192 -154243161 + AT_rich Low_complexity Low_complexity 1 35 0 190 293 19 129 chr1 88421924 88422180 -154242173 - L2 LINE L2 -9 3304 3077 226 359 145 7 chr1 88422759 88422904 -154241449 - L2 LINE L2 -283 3030 2866 23 54 0 0 chr1 88423028 88423065 -154241288 + AT_rich Low_complexity Low_complexity 1 37 0 212 233 14 0 chr1 88423319 88423392 -154240961 + (TA)n Simple_repeat Simple_repeat 1 74 0 223 365 117 7 chr1 88423828 88423965 -154240388 + MIR SINE MIR 22 173 -89 1201 183 0 33 chr1 88423999 88424212 -154240141 + AluJb SINE Alu 87 292 -20 2883 58 3 8 chr1 88424234 88424615 -154239738 + L1PA5 LINE L1 5773 6151 -3 2044 261 45 54 chr1 88424628 88424881 -154239472 - L1ME1 LINE L1 -18 6148 5894 2264 90 3 3 chr1 88424881 88425182 -154239171 - AluY SINE Alu -10 301 1 2044 261 45 54 chr1 88425182 88425805 -154238548 - L1ME1 LINE L1 -272 5894 5284 1437 203 0 16 chr1 88425805 88426110 -154238243 - L1MC1 LINE L1 0 6333 6034 830 185 40 52 chr1 88426111 88426284 -154238069 - Tigger2a DNA MER2_type -263 171 1 687 224 71 32 chr1 88426287 88426544 -154237809 - L1M4 LINE L1 -2379 3767 3491 17845 67 1 1 chr1 88426537 88429674 -154234679 - L1PA6 LINE L1 -4 6150 3013 298 277 12 0 chr1 88430011 88430094 -154234259 + MIR SINE MIR 178 261 -1 325 293 0 0 chr1 88431277 88431352 -154233001 + L2 LINE L2 3182 3256 -16 215 264 62 23 chr1 88431689 88431818 -154232535 + (TATATG)n Simple_repeat Simple_repeat 3 136 0 26 30 0 0 chr1 88433718 88433751 -154230602 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr1 88433801 88433847 -154230506 + AT_rich Low_complexity Low_complexity 1 46 0 4072 168 51 6 chr1 88434199 88434990 -154229363 + LTR1B LTR ERV1 1 826 0 2066 120 0 40 chr1 88435565 88435889 -154228464 + AluSq SINE Alu 1 311 -2 301 202 67 45 chr1 88435973 88436062 -154228291 - L1MC4 LINE L1 -1337 6705 6615 24 53 0 0 chr1 88436081 88436119 -154228234 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 88436283 88436306 -154228047 + AT_rich Low_complexity Low_complexity 1 23 0 340 307 44 18 chr1 88436330 88436444 -154227909 - MER5A DNA MER1_type -3 186 70 373 293 60 35 chr1 88436462 88436578 -154227775 + L2 LINE L2 3149 3267 -5 222 368 38 15 chr1 88436744 88436877 -154227476 - L2 LINE L2 -2 3311 3176 21 71 0 0 chr1 88438113 88438155 -154226198 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr1 88439343 88439387 -154224966 + AT_rich Low_complexity Low_complexity 1 44 0 277 185 19 0 chr1 88441518 88441572 -154222781 - MER5B DNA MER1_type -123 55 1 265 339 50 59 chr1 88441810 88442031 -154222322 - MIR SINE MIR -2 260 42 219 298 79 112 chr1 88443212 88443467 -154220886 + L2 LINE L2 2002 2247 -1067 1233 45 0 0 chr1 88443467 88443621 -154220732 - L1PA4 LINE L1 -3 6152 5999 219 298 79 112 chr1 88443621 88443670 -154220683 + L2 LINE L2 2247 2296 -1018 492 308 52 55 chr1 88443682 88444114 -154220239 - LTR33 LTR ERVL -5 516 46 645 203 8 0 chr1 88444334 88444467 -154219886 + AluJo SINE Alu 1 134 -178 420 380 80 12 chr1 88444510 88444834 -154219519 - L2 LINE L2 -604 2710 2365 1719 166 7 13 chr1 88444851 88445158 -154219195 + AluJb SINE Alu 1 305 -7 1740 170 18 0 chr1 88445417 88445699 -154218654 - AluJb SINE Alu -25 287 1 193 299 35 81 chr1 88445902 88445989 -154218364 - MIR3 SINE MIR -16 192 110 434 115 0 39 chr1 88447478 88447556 -154216797 - MER53 DNA DNA -4 185 111 30 45 0 0 chr1 88447986 88448030 -154216323 + AT_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr1 88448252 88448280 -154216073 + AT_rich Low_complexity Low_complexity 1 28 0 190 286 214 0 chr1 88449259 88449343 -154215010 + MIR SINE MIR 124 225 -37 240 236 0 36 chr1 88449848 88449903 -154214450 + MER3 DNA MER1_type 38 90 -119 * 488 252 0 0 chr1 88449865 88449992 -154214361 - MER3 DNA MER1_type -5 204 78 379 328 60 71 chr1 88451093 88451459 -154212894 - L2 LINE L2 -148 3165 2804 803 318 82 37 chr1 88451462 88452171 -154212182 + L2 LINE L2 2534 3276 -37 518 300 37 11 chr1 88452218 88452408 -154211945 - L2 LINE L2 -786 2528 2334 1552 139 14 56 chr1 88452658 88452945 -154211408 - AluSx SINE Alu -8 304 30 319 339 62 0 chr1 88453054 88453184 -154211169 - MIR3 SINE MIR -54 154 17 1595 212 47 42 chr1 88453228 88453657 -154210696 - MER63B DNA MER1_type 0 436 6 268 301 114 8 chr1 88453695 88453818 -154210535 + MIR SINE MIR 84 219 -43 254 200 0 125 chr1 88453831 88453889 -154210464 - MER91 DNA MER1_type 0 190 143 1949 125 10 0 chr1 88453889 88454184 -154210169 + AluSx SINE Alu 1 298 -14 254 200 0 125 chr1 88454184 88454205 -154210148 - MER91 DNA MER1_type -47 143 121 2080 174 68 38 chr1 88455024 88455495 -154208858 + L1MA9 LINE L1 5679 6163 -149 22 56 0 0 chr1 88455525 88455561 -154208792 + AT_rich Low_complexity Low_complexity 1 36 0 366 252 17 17 chr1 88455769 88455888 -154208465 + HAL1b LINE L1 855 973 -375 25 51 0 0 chr1 88455992 88456031 -154208322 + AT_rich Low_complexity Low_complexity 1 39 0 286 284 0 43 chr1 88456056 88456172 -154208181 + HAL1b LINE L1 1185 1295 -53 185 197 15 0 chr1 88456228 88456294 -154208059 + (TA)n Simple_repeat Simple_repeat 2 68 0 27 92 0 0 chr1 88456535 88456611 -154207742 + AT_rich Low_complexity Low_complexity 1 76 0 23 33 0 0 chr1 88457472 88457502 -154206851 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr1 88458622 88458647 -154205706 + AT_rich Low_complexity Low_complexity 1 25 0 739 329 45 27 chr1 88459621 88459995 -154204358 + L2 LINE L2 2857 3237 -76 1923 143 3 16 chr1 88460127 88460441 -154203912 + AluSx SINE Alu 3 312 0 24 0 0 0 chr1 88460789 88460813 -154203540 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr1 88462122 88462148 -154202205 + AT_rich Low_complexity Low_complexity 1 26 0 198 353 78 46 chr1 88462615 88462833 -154201520 - L2 LINE L2 -227 3045 2821 6423 107 20 85 chr1 88462932 88464761 -154199592 + L1PA8 LINE L1 4404 6165 -7 974 205 0 0 chr1 88464816 88464987 -154199366 - FRAM SINE Alu -14 162 1 205 337 55 74 chr1 88465016 88465179 -154199174 - L2 LINE L2 -630 2684 2525 252 354 113 38 chr1 88465397 88466157 -154198196 + L2 LINE L2 1053 1869 -1445 259 317 12 0 chr1 88466158 88466240 -154198113 + CT-rich Low_complexity Low_complexity 2 84 0 670 208 0 0 chr1 88466581 88466701 -154197652 + AluJb SINE Alu 179 298 -14 592 25 37 0 chr1 88466919 88467000 -154197353 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 264 293 121 50 chr1 88467055 88467393 -154196960 - L1MC4a LINE L1 -413 7395 7034 2164 225 19 19 chr1 88467533 88467999 -154196354 - MER70A LTR ERVL 0 472 7 333 313 69 61 chr1 88468004 88468088 -154196265 - L1MC4 LINE L1 -929 7113 7031 2319 129 11 14 chr1 88468088 88468453 -154195900 + THE1B LTR MaLR 1 364 0 8793 130 62 37 chr1 88468453 88469995 -154194358 + THE1B-int LTR MaLR 1 1580 0 2267 133 11 19 chr1 88469995 88470362 -154193991 + THE1B LTR MaLR 1 364 0 333 313 69 61 chr1 88470362 88470537 -154193816 - L1MC4 LINE L1 -1010 7032 6850 25 65 0 0 chr1 88470944 88470990 -154193363 + AT_rich Low_complexity Low_complexity 1 46 0 200 182 0 0 chr1 88471088 88471121 -154193232 + (TG)n Simple_repeat Simple_repeat 2 34 0 765 251 106 12 chr1 88471160 88471415 -154192938 - L1MC4 LINE L1 -1881 5927 5649 384 259 41 6 chr1 88471434 88471604 -154192749 + (TA)n Simple_repeat Simple_repeat 1 176 0 677 251 79 30 chr1 88471688 88471955 -154192398 - L1MC4 LINE L1 -2166 5642 5363 673 356 108 30 chr1 88472966 88473776 -154190577 + L2 LINE L2 2152 3048 -224 383 347 41 6 chr1 88474511 88474681 -154189672 - L2 LINE L2 -1647 1667 1492 7275 94 9 21 chr1 88474683 88475753 -154188600 + MER11C LTR ERVK 1 1057 -14 270 274 148 0 chr1 88475770 88475905 -154188448 - L2 LINE L2 -1815 1499 1345 228 358 36 36 chr1 88476210 88476403 -154187950 - L2 LINE L2 -922 2392 2200 280 367 58 0 chr1 88479247 88479367 -154184986 - L2 LINE L2 -271 3042 2916 417 357 19 0 chr1 88480188 88480342 -154184011 - MIR SINE MIR -98 164 8 299 353 81 6 chr1 88480431 88480604 -154183749 + MIR SINE MIR 53 238 -24 22 56 0 0 chr1 88481038 88481074 -154183279 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr1 88481124 88481146 -154183207 + (TA)n Simple_repeat Simple_repeat 2 23 0 2151 119 0 3 chr1 88481146 88481439 -154182914 - AluSq SINE Alu -21 292 1 12727 138 64 20 chr1 88481680 88481864 -154182489 - Tigger4(Zombi) DNA MER2_type 0 2731 2556 1924 116 18 7 chr1 88481864 88482175 -154182178 - AluSx SINE Alu 0 316 3 12727 138 64 20 chr1 88482175 88484265 -154180088 - Tigger4(Zombi) DNA MER2_type -175 2556 357 42700 36 21 1 chr1 88484294 88490304 -154174049 + L1PA2 LINE L1 1 6132 -23 1895 177 71 17 chr1 88490304 88490324 -154174029 - Tigger4(Zombi) DNA MER2_type -2351 380 363 207 0 0 0 chr1 88490324 88490347 -154174006 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1895 177 71 17 chr1 88490347 88490677 -154173676 - Tigger4(Zombi) DNA MER2_type -2368 363 11 198 0 0 0 chr1 88491796 88491818 -154172535 + (T)n Simple_repeat Simple_repeat 1 22 0 200 240 27 93 chr1 88491823 88491898 -154172455 - MIR3 SINE MIR -131 77 8 197 200 0 25 chr1 88492731 88492771 -154171582 - MIR SINE MIR -1 261 223 1789 107 4 0 chr1 88492965 88493209 -154171144 + AluSg SINE Alu 61 305 -5 237 370 125 14 chr1 88493480 88493696 -154170657 - L2 LINE L2 -209 3063 2824 1671 181 0 0 chr1 88493789 88494065 -154170288 + AluJb SINE Alu 1 276 -36 1118 109 0 14 chr1 88494067 88494426 -154169927 + (GAAA)n Simple_repeat Simple_repeat 1 354 0 379 192 10 10 chr1 88494429 88494528 -154169825 + GA-rich Low_complexity Low_complexity 2 100 0 3232 105 11 2 chr1 88494533 88494982 -154169371 - MLT2A2 LTR ERVL 0 453 1 26725 74 8 8 chr1 88494982 88498411 -154165942 - HERVL-A2 LTR ERVL 0 5654 2225 13998 102 17 0 chr1 88498412 88500338 -154164015 - HERVL-A2 LTR ERVL -3636 2018 61 2823 114 58 0 chr1 88500338 88500378 -154163975 - MLT2A2 LTR ERVL 0 453 417 255 61 0 0 chr1 88500378 88500411 -154163942 + (TA)n Simple_repeat Simple_repeat 2 34 0 2823 114 58 0 chr1 88500411 88500798 -154163555 - MLT2A2 LTR ERVL -36 417 1 485 268 42 14 chr1 88500910 88501052 -154163301 - LTR40a LTR ERVL -373 146 1 21 0 0 0 chr1 88501730 88501751 -154162602 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr1 88501999 88502032 -154162321 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 26 82 0 0 chr1 88502100 88502161 -154162192 + AT_rich Low_complexity Low_complexity 1 61 0 2239 131 8 35 chr1 88502375 88502584 -154161769 - THE1B LTR MaLR 0 364 168 2284 109 0 3 chr1 88502584 88502886 -154161467 + AluSq SINE Alu 1 301 -12 2239 131 8 35 chr1 88502886 88503050 -154161303 - THE1B LTR MaLR -196 168 1 204 184 0 0 chr1 88503055 88503104 -154161249 + A-rich Low_complexity Low_complexity 1 49 0 366 190 25 0 chr1 88503104 88503183 -154161170 + MER106B DNA MER1_type 72 152 -907 33 80 0 0 chr1 88503257 88503332 -154161021 + AT_rich Low_complexity Low_complexity 1 75 0 2541 62 0 0 chr1 88503561 88503866 -154160487 - AluY SINE Alu -6 305 1 9767 122 45 1 chr1 88503866 88505318 -154159035 - THE1C-int LTR MaLR -65 1515 1 2380 131 16 11 chr1 88505318 88505691 -154158662 - THE1C LTR MaLR 0 375 1 205 244 0 0 chr1 88507908 88507953 -154156400 - L2 LINE L2 -1 3312 3268 2315 90 3 23 chr1 88509064 88509374 -154154979 - AluSc SINE Alu -5 304 1 291 316 61 18 chr1 88509406 88509520 -154154833 - L2 LINE L2 0 3313 3195 2345 87 3 23 chr1 88509781 88510091 -154154262 - AluSc SINE Alu -5 304 1 285 316 61 18 chr1 88510122 88510236 -154154117 - L2 LINE L2 0 3313 3195 474 299 84 33 chr1 88510430 88510644 -154153709 + LTR33A LTR ERVL 6 230 -293 525 290 47 0 chr1 88510694 88510863 -154153490 + LTR33A LTR ERVL 347 523 0 525 314 157 38 chr1 88511393 88511506 -154152847 + L2 LINE L2 1996 2094 -1220 2215 94 7 3 chr1 88511506 88511803 -154152550 - AluSc SINE Alu -11 298 1 525 314 157 38 chr1 88511803 88512301 -154152052 + L2 LINE L2 2094 2680 -634 604 227 55 0 chr1 88512559 88512687 -154151666 + L1M4 LINE L1 652 786 -5756 1560 257 22 7 chr1 88512690 88513094 -154151259 + L1M4 LINE L1 1469 1878 -4768 328 266 11 32 chr1 88513196 88513290 -154151063 - L2 LINE L2 -54 3259 3168 23 0 0 0 chr1 88513296 88513319 -154151034 + AT_rich Low_complexity Low_complexity 1 23 0 238 182 30 0 chr1 88513319 88513385 -154150968 + (TA)n Simple_repeat Simple_repeat 2 69 0 240 306 8 65 chr1 88513546 88513670 -154150683 + L2 LINE L2 3197 3313 0 188 256 105 23 chr1 88514907 88514993 -154149360 - MIR3 SINE MIR -23 185 93 30 0 0 0 chr1 88515098 88515128 -154149225 + AT_rich Low_complexity Low_complexity 1 30 0 192 281 16 31 chr1 88515446 88515510 -154148843 - MIR3 SINE MIR -24 184 122 356 248 101 34 chr1 88515928 88516077 -154148276 - MIR SINE MIR -55 207 49 2297 90 0 3 chr1 88516749 88517059 -154147294 - AluY SINE Alu -2 309 1 204 288 82 75 chr1 88517846 88517992 -154146361 - MIR3 SINE MIR -49 159 13 23 101 0 0 chr1 88517993 88518072 -154146281 + AT_rich Low_complexity Low_complexity 1 79 0 276 30 0 0 chr1 88518351 88518384 -154145969 + (TG)n Simple_repeat Simple_repeat 2 34 0 586 309 31 7 chr1 88519295 88519589 -154144764 + L1M4 LINE L1 2945 3245 -3399 464 314 52 14 chr1 88519579 88519789 -154144564 + L1ME3 LINE L1 5933 6150 -12 * 201 94 0 0 chr1 88519791 88519823 -154144530 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 25 51 0 0 chr1 88519912 88519951 -154144402 + AT_rich Low_complexity Low_complexity 1 39 0 559 247 84 106 chr1 88520069 88520511 -154143842 + MLT1H LTR MaLR 114 545 -4 846 139 37 27 chr1 88521002 88521189 -154143164 - MER53 DNA DNA 0 189 1 757 288 32 98 chr1 88521513 88522044 -154142309 + MER34 LTR ERV1 1 496 -46 1891 132 0 0 chr1 88522181 88522447 -154141906 - AluSx SINE Alu -2 310 45 1979 126 30 54 chr1 88522449 88522822 -154141531 + THE1B LTR MaLR 1 364 0 11138 86 37 5 chr1 88522822 88524353 -154140000 + THE1B-int LTR MaLR 1 1580 0 1954 154 16 48 chr1 88524353 88524729 -154139624 + THE1B LTR MaLR 1 364 0 304 170 0 0 chr1 88524729 88524776 -154139577 - AluSx SINE Alu -252 47 1 181 255 20 0 chr1 88526168 88526219 -154138134 - MIR SINE MIR -45 217 166 351 215 13 60 chr1 88527308 88527457 -154136896 + L1MC5 LINE L1 7772 7913 -48 2302 209 48 28 chr1 88528380 88528878 -154135475 + MLT2B2 LTR ERVL 1 508 -7 26 0 0 0 chr1 88530931 88530957 -154133396 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr1 88531313 88531339 -154133014 + (ATG)n Simple_repeat Simple_repeat 3 28 0 485 235 52 139 chr1 88532235 88532486 -154131867 + MIR SINE MIR 34 262 0 38765 83 12 8 chr1 88534684 88540812 -154123541 + L1PA3 LINE L1 1 6155 0 521 275 50 50 chr1 88541502 88541702 -154122651 - MIR SINE MIR -61 201 2 390 168 373 12 chr1 88542097 88542258 -154122095 - MER20 DNA MER1_type 0 219 1 211 310 0 0 chr1 88543764 88543822 -154120531 + GA-rich Low_complexity Low_complexity 1 58 0 2015 154 30 28 chr1 88543918 88544281 -154120072 + THE1B LTR MaLR 1 364 0 10670 108 28 10 chr1 88544281 88545834 -154118519 + THE1B-int LTR MaLR 1 1580 0 2077 151 28 28 chr1 88545834 88546198 -154118155 + THE1B LTR MaLR 1 364 0 350 321 193 14 chr1 88546504 88546722 -154117631 - MIR SINE MIR 0 262 6 17263 233 24 26 chr1 88546786 88547470 -154116883 - L1PA15 LINE L1 -2 7601 6917 2369 82 0 16 chr1 88547470 88547786 -154116567 - AluY SINE Alu 0 311 1 17263 233 24 26 chr1 88547786 88554434 -154109919 - L1PA15 LINE L1 -686 6917 7 231 36 0 0 chr1 88554489 88554517 -154109836 + (TAA)n Simple_repeat Simple_repeat 2 29 0 570 281 31 0 chr1 88554525 88554685 -154109668 - MIR SINE MIR -26 236 72 414 0 0 0 chr1 88555787 88555833 -154108520 + (A)n Simple_repeat Simple_repeat 1 46 0 349 219 67 19 chr1 88556318 88556423 -154107930 + MIR SINE MIR 110 219 -43 2389 115 120 5 chr1 88556458 88556842 -154107511 - MSTA LTR MaLR 0 428 1 12353 100 6 3 chr1 88558720 88560534 -154103819 - L1PA7 LINE L1 -1802 4344 2525 7229 97 0 3 chr1 88560534 88562336 -154102017 + L1PA7 LINE L1 4357 6154 0 277 241 11 0 chr1 88563016 88563103 -154101250 + (TA)n Simple_repeat Simple_repeat 1 88 0 180 152 0 0 chr1 88563789 88563822 -154100531 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2072 129 0 13 chr1 88563899 88564208 -154100145 + AluSx SINE Alu 1 305 -7 2123 120 0 10 chr1 88564879 88565179 -154099174 + AluSg SINE Alu 5 301 -9 199 306 12 24 chr1 88565285 88565370 -154098983 - L2 LINE L2 -1 3312 3229 552 337 161 42 chr1 88565555 88566430 -154097923 + L2 LINE L2 1749 2786 -486 2342 67 0 17 chr1 88566430 88566749 -154097604 + AluY SINE Alu 1 311 0 552 337 161 42 chr1 88566749 88567002 -154097351 + L2 LINE L2 2786 3008 -264 208 347 42 0 chr1 88567106 88567178 -154097175 + MIR SINE MIR 38 112 -150 251 209 0 43 chr1 88567380 88567495 -154096858 + (CATATA)n Simple_repeat Simple_repeat 5 114 0 37 23 0 0 chr1 88568052 88568096 -154096257 + AT_rich Low_complexity Low_complexity 1 44 0 524 176 0 0 chr1 88568791 88568876 -154095477 - FRAM/FAM SINE Alu -92 84 1 23 0 0 0 chr1 88569466 88569489 -154094864 + AT_rich Low_complexity Low_complexity 1 23 0 814 251 126 23 chr1 88569587 88569977 -154094376 - L1MC5 LINE L1 -543 7418 6989 2126 238 86 29 chr1 88569984 88570091 -154094262 + MER50 LTR ERV1 10 109 -625 3850 180 57 31 chr1 88570091 88570893 -154093460 + LTR1B LTR ERV1 1 823 -3 2126 238 86 29 chr1 88570893 88571471 -154092882 + MER50 LTR ERV1 109 734 0 617 228 12 104 chr1 88571487 88571737 -154092616 - L1MC5 LINE L1 -1000 6961 6735 2470 68 0 0 chr1 88571738 88572034 -154092319 - AluY SINE Alu -15 296 1 214 191 0 0 chr1 88572211 88572253 -154092100 + T-rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 88572387 88572416 -154091937 + AT_rich Low_complexity Low_complexity 1 29 0 1194 251 25 70 chr1 88572442 88572929 -154091424 + MLT1C LTR MaLR 1 465 -2 630 291 43 39 chr1 88573789 88574043 -154090310 - MIR SINE MIR -5 257 3 1487 224 3 13 chr1 88577072 88577385 -154086968 + AluJo SINE Alu 1 310 -2 207 0 0 0 chr1 88577701 88577724 -154086629 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1750 138 11 18 chr1 88577734 88578009 -154086344 - AluJo SINE Alu -37 275 3 31 58 0 0 chr1 88580504 88580556 -154083797 + AT_rich Low_complexity Low_complexity 1 52 0 468 257 21 28 chr1 88580827 88580971 -154083382 + MIR SINE MIR 102 244 -18 681 201 0 8 chr1 88580972 88581106 -154083247 + FLAM_C SINE Alu 1 133 0 1124 174 93 20 chr1 88582083 88582330 -154082023 - AluJo SINE Alu -12 300 36 224 305 43 67 chr1 88582504 88582668 -154081685 - MIR SINE MIR -50 212 53 247 346 0 15 chr1 88582696 88582792 -154081561 + MIR SINE MIR 3 96 -112 25 0 0 0 chr1 88583152 88583177 -154081176 + AT_rich Low_complexity Low_complexity 1 25 0 1407 197 143 16 chr1 88584234 88584675 -154079678 + LTR54B LTR ERV1 1 497 -1 1723 179 31 8 chr1 88585020 88585377 -154078976 + MLT1A1 LTR MaLR 1 365 0 190 405 18 9 chr1 88585846 88585957 -154078396 + L2 LINE L2 3155 3266 -6 259 222 19 0 chr1 88586195 88586249 -154078104 + (CA)n Simple_repeat Simple_repeat 2 56 0 624 193 112 48 chr1 88590217 88590404 -154073949 - MER3 DNA MER1_type -5 204 6 578 301 6 6 chr1 88590751 88590924 -154073429 + MIR SINE MIR 88 260 -2 254 337 33 11 chr1 88591822 88591914 -154072439 + LTR33A LTR ERVL 56 149 -374 23 54 0 0 chr1 88592649 88592686 -154071667 + AT_rich Low_complexity Low_complexity 1 37 0 1048 83 0 0 chr1 88593473 88593605 -154070748 - AluY SINE Alu -179 132 1 223 229 98 0 chr1 88593786 88593847 -154070506 - L2 LINE L2 -579 2735 2669 1676 207 25 3 chr1 88593983 88594340 -154070013 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr1 88594424 88594447 -154069906 + AT_rich Low_complexity Low_complexity 1 23 0 183 225 50 88 chr1 88594509 88594589 -154069764 + L2 LINE L2 2140 2216 -1098 560 279 88 39 chr1 88594661 88594944 -154069409 + L1MC4a LINE L1 5531 5827 -1981 1436 226 64 20 chr1 88595270 88595475 -154068878 - LTR37B LTR ERV1 -2 466 271 2465 146 15 0 chr1 88595475 88595872 -154068481 - MER57A LTR ERV1 0 403 1 1436 226 64 20 chr1 88595872 88596105 -154068248 - LTR37B LTR ERV1 -197 271 9 205 264 0 0 chr1 88596538 88596591 -154067762 + (TG)n Simple_repeat Simple_repeat 2 54 0 225 227 76 15 chr1 88598857 88598923 -154065430 - MIR SINE MIR -116 146 77 202 299 0 0 chr1 88599853 88599920 -154064433 + T-rich Low_complexity Low_complexity 1 67 0 23 54 0 0 chr1 88599927 88599964 -154064389 + AT_rich Low_complexity Low_complexity 1 37 0 4864 180 47 25 chr1 88600022 88601138 -154063215 + L1MD2 LINE L1 5219 6358 -1 287 225 0 50 chr1 88601447 88601527 -154062826 - MER5A DNA MER1_type -44 145 70 25 31 0 0 chr1 88602689 88602721 -154061632 + AT_rich Low_complexity Low_complexity 1 32 0 541 293 194 12 chr1 88602904 88603157 -154061196 + L2 LINE L2 3015 3313 0 3028 184 30 7 chr1 88603324 88603922 -154060431 + L1MB2 LINE L1 5560 6171 0 31 0 0 0 chr1 88604167 88604198 -154060155 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr1 88604584 88604620 -154059733 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr1 88604855 88604899 -154059454 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr1 88605349 88605380 -154058973 + AT_rich Low_complexity Low_complexity 1 31 0 329 241 146 19 chr1 88605965 88606123 -154058230 + MER112 DNA MER1_type 71 248 -12 591 272 137 37 chr1 88606637 88607336 -154057017 + LTR1B LTR ERV1 33 826 0 180 0 0 0 chr1 88607740 88607760 -154056593 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2220 90 17 0 chr1 88607886 88608175 -154056178 - AluSg SINE Alu -16 294 1 235 194 30 45 chr1 88608522 88608589 -154055764 - LTR33A LTR ERVL -1 522 457 620 288 33 29 chr1 88610185 88610425 -154053928 - ERVL LTR ERVL -606 5158 4918 328 218 86 2 chr1 88610692 88610787 -154053566 + MLT1J1 LTR MaLR 326 416 -30 867 303 81 25 chr1 88610901 88611346 -154053007 - ERVL LTR ERVL -960 4804 4335 300 286 0 0 chr1 88611559 88611629 -154052724 + MLT1J1 LTR MaLR 1 70 -376 821 280 108 58 chr1 88611629 88612194 -154052159 + MLT1G1 LTR MaLR 2 594 -1 619 318 62 39 chr1 88612204 88612562 -154051791 + MLT1J1 LTR MaLR 75 440 -6 187 345 0 0 chr1 88612578 88612633 -154051720 + MIR SINE MIR 95 149 -113 22 70 0 0 chr1 88614883 88614926 -154049427 + AT_rich Low_complexity Low_complexity 1 43 0 236 171 0 100 chr1 88615098 88615168 -154049185 - L1MC4a LINE L1 -1876 5932 5870 26 0 0 0 chr1 88615183 88615209 -154049144 + AT_rich Low_complexity Low_complexity 1 26 0 385 302 129 12 chr1 88615497 88615745 -154048608 - L1MC4a LINE L1 -2158 5650 5374 23 33 0 0 chr1 88615749 88615779 -154048574 + AT_rich Low_complexity Low_complexity 1 30 0 218 262 98 0 chr1 88616000 88616061 -154048292 - L2 LINE L2 -21 3251 3185 197 386 57 34 chr1 88616233 88616409 -154047944 + L2 LINE L2 2777 2956 -358 1825 228 126 27 chr1 88616597 88617186 -154047167 - L1ME1 LINE L1 -6 6160 5514 270 262 131 28 chr1 88617248 88617355 -154046998 + L2 LINE L2 3196 3313 0 21 57 0 0 chr1 88618533 88618568 -154045785 + AT_rich Low_complexity Low_complexity 1 35 0 1535 224 94 41 chr1 88619053 88619540 -154044813 - MLT2B1 LTR ERVL -7 513 1 4888 179 22 17 chr1 88620586 88622258 -154042095 + L1P4 LINE L1 4125 5800 -366 1983 249 122 90 chr1 88622493 88623547 -154040806 + MER52A LTR ERV1 1 1745 -10 929 329 54 3 chr1 88623575 88623925 -154040428 - MLT1J LTR MaLR -121 390 23 238 381 138 4 chr1 88626492 88626752 -154037601 + L3 LINE CR1 1231 1525 -52 2400 85 0 0 chr1 88626797 88627103 -154037250 + AluSq SINE Alu 2 307 -6 314 298 94 30 chr1 88627356 88628032 -154036321 - L1ME LINE L1 -4699 1562 794 3349 219 42 24 chr1 88628055 88629414 -154034939 - L1MD1 LINE L1 -192 6050 4674 1399 180 44 18 chr1 88629428 88629700 -154034653 - AluJo SINE Alu -29 283 5 189 147 0 0 chr1 88629752 88629786 -154034567 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 298 246 48 6 chr1 88629792 88629959 -154034394 + (TA)n Simple_repeat Simple_repeat 2 175 0 4939 264 71 23 chr1 88629959 88632156 -154032197 - L1MD1 LINE L1 -1518 4628 2326 1855 150 29 47 chr1 88632179 88632559 -154031794 + THE1C LTR MaLR 1 373 -2 9963 126 12 30 chr1 88632561 88634169 -154030184 + THE1C-int LTR MaLR 1 1580 0 2078 130 22 43 chr1 88634182 88634551 -154029802 + THE1C LTR MaLR 15 375 0 21 36 0 0 chr1 88635154 88635182 -154029171 + AT_rich Low_complexity Low_complexity 1 28 0 200 291 291 0 chr1 88636988 88637091 -154027262 + L3 LINE CR1 347 479 -1098 412 330 75 38 chr1 88637316 88637555 -154026798 - L2 LINE L2 -213 3059 2812 315 269 46 28 chr1 88637663 88637771 -154026582 + MLT2E LTR ERVL 35 144 -484 28 0 0 0 chr1 88638096 88638124 -154026229 + AT_rich Low_complexity Low_complexity 1 28 0 211 141 16 47 chr1 88638351 88638415 -154025938 + A-rich Low_complexity Low_complexity 2 63 0 2377 161 17 21 chr1 88638790 88639269 -154025084 - L1MC1 LINE L1 -14 6319 5843 1956 156 3 13 chr1 88639487 88639801 -154024552 + AluSx SINE Alu 1 311 -1 531 311 65 58 chr1 88640262 88640571 -154023782 + MLT1J2 LTR MaLR 17 327 -123 1732 146 33 0 chr1 88640574 88640886 -154023467 + AluSx SINE Alu 1 321 0 576 202 9 0 chr1 88641100 88641209 -154023144 - MLT1C LTR MaLR -7 460 351 294 217 0 0 chr1 88641342 88641402 -154022951 - MLT1C-int LTR MaLR -487 884 825 * 2136 237 49 7 chr1 88641394 88641978 -154022375 - MLT1C-int LTR MaLR -662 709 5 1793 233 42 7 chr1 88641983 88642434 -154021919 - MLT1C LTR MaLR 0 467 1 310 238 50 25 chr1 88642435 88642515 -154021838 - L2 LINE L2 -1357 1957 1876 577 345 154 31 chr1 88642531 88643010 -154021343 + L3 LINE CR1 937 1474 -103 1307 191 0 0 chr1 88643095 88643325 -154021028 - Tigger5 DNA MER2_type 0 2323 2094 315 293 0 12 chr1 88643317 88643399 -154020954 - Tigger5 DNA MER2_type -2242 81 1 * 480 256 105 39 chr1 88643970 88644302 -154020051 + L1ME LINE L1 3990 4343 -1803 409 149 15 0 chr1 88644393 88644460 -154019893 - MLT1H1 LTR MaLR 0 555 488 293 330 87 0 chr1 88644468 88644571 -154019782 - L2 LINE L2 -407 2907 2796 230 208 0 19 chr1 88644601 88644654 -154019699 + L1ME LINE L1 5740 5791 -379 22 0 0 0 chr1 88644713 88644735 -154019618 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 88645254 88645275 -154019078 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr1 88645357 88645385 -154018968 + (T)n Simple_repeat Simple_repeat 1 28 0 265 356 49 98 chr1 88645852 88646200 -154018153 - L2 LINE L2 -3 3269 2939 306 286 100 29 chr1 88646408 88646548 -154017805 + L1 LINE L1 958 1107 -5991 543 312 53 25 chr1 88647070 88647355 -154016998 + L1 LINE L1 1587 1879 -5289 7152 205 35 24 chr1 88647356 88648626 -154015727 + L1 LINE L1 3717 4972 -2195 1648 189 7 0 chr1 88648626 88648955 -154015398 + AluSx SINE Alu 1 331 0 7152 205 35 24 chr1 88648955 88649411 -154014942 + L1 LINE L1 4972 5469 -1698 5969 127 27 11 chr1 88649411 88650364 -154013989 - LTR5 LTR ERVK 0 969 1 7152 205 35 24 chr1 88650364 88650531 -154013822 + L1 LINE L1 5469 5633 -1534 898 72 0 0 chr1 88650531 88650642 -154013711 + AluY SINE Alu 1 111 -200 2391 109 63 21 chr1 88650642 88651072 -154013281 + LTR7 LTR ERV1 1 448 -2 3854 68 6 2 chr1 88651074 88651590 -154012763 + HERVH LTR ERV1 1 518 -7195 23 33 0 0 chr1 88654509 88654539 -154009814 + AT_rich Low_complexity Low_complexity 1 30 0 335 108 31 31 chr1 88655809 88655874 -154008479 + LTR9B LTR ERV1 10 74 -570 1657 192 72 29 chr1 88655874 88656260 -154008093 + LTR9B LTR ERV1 35 437 -207 282 170 21 0 chr1 88656258 88656305 -154008048 + LTR9B LTR ERV1 595 642 -2 * 1898 265 113 28 chr1 88656419 88657209 -154007144 + L1MA9 LINE L1 7 863 -6167 3446 212 32 24 chr1 88657213 88657330 -154007023 + L1MA9 LINE L1 4164 4279 -2827 4154 77 4 7 chr1 88657330 88657886 -154006467 + MER41A LTR ERV1 1 554 0 3446 212 32 24 chr1 88657886 88658607 -154005746 + L1MA9 LINE L1 4279 5009 -2097 210 143 0 0 chr1 88658673 88658708 -154005645 + (A)n Simple_repeat Simple_repeat 1 35 0 4288 168 40 79 chr1 88658709 88659830 -154004523 + L1MA9 LINE L1 5585 6686 -586 237 257 43 0 chr1 88659830 88659900 -154004453 + LTR66 LTR ERVL 386 458 -152 4288 168 40 79 chr1 88659900 88660463 -154003890 + L1MA9 LINE L1 6686 7269 -3 515 144 79 36 chr1 88661022 88661161 -154003192 - LTR45B LTR ERV1 -2 487 343 357 281 33 0 chr1 88663174 88663295 -154001058 - MIR SINE MIR -3 259 135 536 230 186 40 chr1 88663354 88663673 -154000680 - MER61D LTR ERV1 -10 970 202 * 673 264 23 11 chr1 88663650 88663824 -154000529 - LTR28 LTR ERV1 -844 176 1 455 305 40 0 chr1 88663824 88663975 -154000378 - MIR SINE MIR -104 158 2 311 281 46 97 chr1 88664245 88664462 -153999891 - MLT1K LTR MaLR -17 571 366 347 310 62 8 chr1 88664810 88664939 -153999414 + MIR SINE MIR 117 252 -10 288 53 0 0 chr1 88665063 88665101 -153999252 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1271 202 4 16 chr1 88665109 88665367 -153998986 - AluJo SINE Alu -55 257 3 2564 151 66 80 chr1 88665824 88666178 -153998175 + L1MC3 LINE L1 7202 7546 -239 2352 80 3 0 chr1 88666178 88666477 -153997876 + AluY SINE Alu 1 300 -11 2564 151 66 80 chr1 88666477 88666710 -153997643 + L1MC3 LINE L1 7546 7781 -4 293 306 185 30 chr1 88666904 88667234 -153997119 + MLT1K LTR MaLR 164 544 -44 233 326 87 14 chr1 88667555 88667693 -153996660 + L2 LINE L2 3129 3276 -37 464 319 11 58 chr1 88668360 88668548 -153995805 + MIR SINE MIR 74 252 -10 413 320 157 0 chr1 88669561 88669714 -153994639 + MER5A DNA MER1_type 10 186 -3 * 466 328 17 17 chr1 88669714 88669858 -153994495 - MER5A DNA MER1_type -43 146 3 1000 220 71 8 chr1 88670450 88670705 -153993648 + L1ME3A LINE L1 5513 5783 -338 282 116 0 0 chr1 88672072 88672115 -153992238 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 419 293 87 35 chr1 88672211 88672498 -153991855 + LTR33 LTR ERVL 156 457 -64 2382 63 0 13 chr1 88672513 88672828 -153991525 + AluY SINE Alu 1 311 0 2223 107 10 0 chr1 88673027 88673325 -153991028 + AluSx SINE Alu 3 303 -9 31 0 0 0 chr1 88673371 88673402 -153990951 + AT_rich Low_complexity Low_complexity 1 31 0 229 242 55 11 chr1 88673440 88673531 -153990822 + L1ME3A LINE L1 5843 5937 -233 1632 178 13 19 chr1 88673801 88674110 -153990243 - AluJo SINE Alu -5 307 1 440 335 109 39 chr1 88674785 88675251 -153989102 + MLT1K LTR MaLR 88 586 -2 190 292 240 31 chr1 88675619 88675715 -153988638 + MIR SINE MIR 107 222 -40 313 354 40 0 chr1 88677284 88677383 -153986970 - L2 LINE L2 -1 3271 3169 3228 191 19 20 chr1 88678857 88678891 -153985462 + L1MC3 LINE L1 7138 7171 -614 2041 123 125 8 chr1 88678891 88679274 -153985079 + MSTA LTR MaLR 1 428 0 3228 191 19 20 chr1 88679274 88679888 -153984465 + L1MC3 LINE L1 7171 7785 0 237 370 26 32 chr1 88680232 88680386 -153983967 + MIR SINE MIR 21 173 -89 447 268 63 73 chr1 88680889 88681123 -153983230 - MIR SINE MIR -10 252 19 266 328 26 35 chr1 88681174 88681290 -153983063 - L3 LINE CR1 -75 1502 1388 2245 114 13 0 chr1 88681812 88682118 -153982235 + AluSx SINE Alu 1 310 -2 214 169 31 15 chr1 88682496 88682561 -153981792 + (TA)n Simple_repeat Simple_repeat 2 67 0 303 286 22 11 chr1 88682568 88682659 -153981694 + L2 LINE L2 2523 2614 -700 249 184 51 10 chr1 88682661 88682759 -153981594 + (TA)n Simple_repeat Simple_repeat 2 103 0 493 202 18 0 chr1 88682762 88682871 -153981482 - LTR33A LTR ERVL -2 521 411 375 297 81 73 chr1 88682952 88683211 -153981142 - LTR33A LTR ERVL -261 262 2 341 305 142 41 chr1 88683627 88683971 -153980382 + L2 LINE L2 1780 2158 -1156 478 121 10 20 chr1 88684008 88684107 -153980246 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 987 311 95 21 chr1 88684108 88684580 -153979773 + L2 LINE L2 2186 2692 -622 230 169 28 56 chr1 88684583 88684654 -153979699 - L1M3 LINE L1 -241 5930 5862 268 327 79 0 chr1 88685647 88685748 -153978605 - MIR SINE MIR -91 171 63 264 169 24 12 chr1 88686282 88686365 -153977988 + (TA)n Simple_repeat Simple_repeat 1 84 0 305 245 0 82 chr1 88686394 88686492 -153977861 + L1MC4 LINE L1 6614 6703 -1339 2872 228 32 6 chr1 88686603 88687231 -153977122 + MER82 DNA MER2_type 1 644 -9 212 0 0 35 chr1 88687463 88687492 -153976861 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 68 93 0 0 chr1 88687560 88687754 -153976599 + AT_rich Low_complexity Low_complexity 1 194 0 1204 197 102 25 chr1 88687809 88688083 -153976270 + AluJb SINE Alu 3 297 -15 258 176 0 0 chr1 88688400 88688451 -153975902 + CT-rich Low_complexity Low_complexity 2 52 0 27 49 0 0 chr1 88688625 88688666 -153975687 + AT_rich Low_complexity Low_complexity 1 41 0 324 282 153 0 chr1 88688865 88689035 -153975318 - L1ME3A LINE L1 -232 5938 5743 270 81 0 0 chr1 88689038 88689075 -153975278 + (T)n Simple_repeat Simple_repeat 1 37 0 593 238 114 59 chr1 88689121 88689394 -153974959 - LTR50 LTR ERVL -505 290 3 251 200 18 0 chr1 88689467 88689522 -153974831 + L1PB1 LINE L1 145 200 -6663 564 225 9 0 chr1 88689522 88689633 -153974720 + L1PB1 LINE L1 634 745 -6118 860 125 59 15 chr1 88689655 88689791 -153974562 - AluSg/x SINE Alu -37 275 134 1791 126 96 0 chr1 88689791 88690061 -153974292 - AluSx SINE Alu -12 300 5 14122 188 46 19 chr1 88690087 88691936 -153972417 + L1PB1 LINE L1 757 2555 -4312 2531 47 0 3 chr1 88691936 88692235 -153972118 + AluY SINE Alu 1 298 -13 14122 188 46 19 chr1 88692235 88696191 -153968162 + L1PB1 LINE L1 2555 6866 -1 577 296 57 50 chr1 88697316 88697485 -153966868 - L1MEd LINE L1 -4919 1200 1027 2552 51 0 3 chr1 88697485 88697797 -153966556 - AluY SINE Alu 0 311 1 577 296 57 50 chr1 88697797 88697944 -153966409 - L1MEd LINE L1 -5092 1027 882 326 223 88 67 chr1 88698032 88698157 -153966196 - L1MEd LINE L1 -5229 890 769 2238 117 0 0 chr1 88698157 88698465 -153965888 - AluSc SINE Alu -1 308 1 326 223 88 67 chr1 88698465 88698577 -153965776 - L1MEd LINE L1 -5350 769 648 25 90 0 0 chr1 88698852 88698919 -153965434 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr1 88699975 88699999 -153964354 + AT_rich Low_complexity Low_complexity 1 24 0 396 321 128 0 chr1 88700109 88700327 -153964026 + MIR SINE MIR 17 262 0 2281 73 21 0 chr1 88701095 88701382 -153962971 + AluSx SINE Alu 1 293 -19 280 397 81 0 chr1 88701481 88701617 -153962736 - L2 LINE L2 -3 3269 3123 387 372 38 23 chr1 88701728 88702072 -153962281 - L2 LINE L2 -342 2972 2624 403 232 32 0 chr1 88703612 88703707 -153960646 + MLT1F1 LTR MaLR 42 139 -428 1768 204 80 67 chr1 88703709 88704255 -153960098 + L1MD3 LINE L1 6158 6358 -1 2423 78 0 3 chr1 88704476 88704784 -153959569 - AluSp SINE Alu -6 307 1 26 0 0 0 chr1 88705129 88705155 -153959198 + AT_rich Low_complexity Low_complexity 1 26 0 377 370 92 28 chr1 88707268 88707771 -153956582 - L2 LINE L2 -412 2902 2368 540 303 74 65 chr1 88708248 88708585 -153955768 - L2 LINE L2 -7 3306 2967 685 347 128 31 chr1 88708727 88709283 -153955070 - L2 LINE L2 -1903 1411 802 711 185 79 37 chr1 88709285 88709474 -153954879 - MER3 DNA MER1_type -12 197 1 313 245 31 10 chr1 88710208 88710306 -153954047 + (TA)n Simple_repeat Simple_repeat 2 101 0 2760 123 12 5 chr1 88710306 88710706 -153953647 + LTR32 LTR ERVL 69 471 0 189 350 0 40 chr1 88712519 88712619 -153951734 - MIR SINE MIR -46 216 121 24 32 0 0 chr1 88713246 88713277 -153951076 + AT_rich Low_complexity Low_complexity 1 31 0 428 271 203 11 chr1 88714114 88714291 -153950062 - MIR SINE MIR -44 218 8 2221 114 3 0 chr1 88715936 88716233 -153948120 - AluSp SINE Alu -15 298 1 605 25 0 12 chr1 88720544 88720624 -153943729 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 385 261 8 62 chr1 88721500 88721541 -153942812 + L2 LINE L2 3191 3233 -80 2847 7 0 0 chr1 88721541 88721849 -153942504 + AluYa5 SINE Alu 1 308 -3 385 261 8 62 chr1 88721849 88721937 -153942416 + L2 LINE L2 3233 3313 0 31 26 0 0 chr1 88722288 88722326 -153942027 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 88724129 88724150 -153940203 + AT_rich Low_complexity Low_complexity 1 21 0 287 221 116 42 chr1 88724516 88724611 -153939742 - L2 LINE L2 -37 3276 3175 766 259 23 117 chr1 88724640 88725033 -153939320 + L2 LINE L2 2958 3313 0 306 302 95 0 chr1 88725576 88725684 -153938669 + MIR SINE MIR 49 166 -63 232 60 90 30 chr1 88725773 88725840 -153938513 + (TA)n Simple_repeat Simple_repeat 1 71 0 2555 99 106 0 chr1 88725858 88726263 -153938090 + LTR7 LTR ERV1 1 448 -2 19607 92 28 12 chr1 88726265 88729205 -153935148 + HERVH LTR ERV1 1 2987 -4726 819 162 20 0 chr1 88729199 88729347 -153935006 + HERVH LTR ERV1 3140 3290 -4423 * 3438 98 6 6 chr1 88729337 88729839 -153934514 + HERVH LTR ERV1 3492 3993 -3720 4035 152 0 34 chr1 88729841 88730526 -153933827 + HERVH LTR ERV1 4488 5149 -2564 1399 113 18 14 chr1 88730523 88730745 -153933608 + HERVH LTR ERV1 5597 5819 -1894 * 2561 83 45 0 chr1 88730743 88731117 -153933236 + HERVH LTR ERV1 7322 7712 -1 2582 98 58 21 chr1 88731118 88731547 -153932806 + LTR7 LTR ERV1 1 445 -5 1509 82 5 0 chr1 88731547 88731741 -153932612 + AluY SINE Alu 101 295 -16 2090 232 37 34 chr1 88731745 88732387 -153931966 + L1MA9 LINE L1 4606 5249 -897 1088 156 118 9 chr1 88732390 88732602 -153931751 + MSTC LTR MaLR 1 235 -193 695 185 5 2 chr1 88732599 88732787 -153931566 + LTR26B LTR ERV1 303 531 0 * 742 229 6 44 chr1 88732789 88732856 -153931497 + MSTC LTR MaLR 253 321 -107 4898 84 6 5 chr1 88732856 88733513 -153930840 - PABL_A LTR ERV1 0 660 3 742 229 6 44 chr1 88733513 88733628 -153930725 + MSTC LTR MaLR 321 428 0 4896 269 90 42 chr1 88733630 88735285 -153929068 + MSTC-int LTR MaLR 2 1735 0 2288 174 9 41 chr1 88735285 88735495 -153928858 + MSTC LTR MaLR 1 191 -237 1686 174 3 25 chr1 88735495 88735811 -153928542 + AluJb SINE Alu 1 309 -3 2288 174 9 41 chr1 88735811 88736042 -153928311 + MSTC LTR MaLR 191 428 0 4835 171 23 44 chr1 88736047 88737128 -153927225 + L1MA9 LINE L1 5254 6311 -1 495 172 32 0 chr1 88737129 88737222 -153927131 + L1MB3 LINE L1 5816 5911 -272 24 53 0 0 chr1 88737229 88737267 -153927086 + AT_rich Low_complexity Low_complexity 1 38 0 196 276 249 27 chr1 88737267 88737452 -153926901 + L2 LINE L2 3080 3305 -8 367 365 70 13 chr1 88737474 88737704 -153926649 - MIR SINE MIR -18 244 2 25 31 0 0 chr1 88742550 88742582 -153921771 + AT_rich Low_complexity Low_complexity 1 32 0 3548 171 15 39 chr1 88742582 88743303 -153921050 + MER44D DNA MER2_type 1 704 -1 225 125 54 0 chr1 88743725 88743781 -153920572 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1022 321 48 13 chr1 88743974 88744432 -153919921 + L2 LINE L2 1188 1661 -1653 1429 273 63 4 chr1 88744482 88744943 -153919410 - L1ME3A LINE L1 -5 6165 5678 1004 311 116 65 chr1 88745086 88746073 -153918280 + L2 LINE L2 2200 3246 -67 1568 185 3 20 chr1 88746168 88746465 -153917888 - AluJo SINE Alu -20 292 1 181 352 0 0 chr1 88747097 88747168 -153917185 + MIR SINE MIR 71 141 -121 190 296 56 28 chr1 88747178 88747249 -153917104 - L2 LINE L2 0 3313 3241 226 247 104 0 chr1 88747590 88747667 -153916686 - L2 LINE L2 0 3272 3188 243 282 26 0 chr1 88747727 88747799 -153916554 - MIR SINE MIR -37 225 152 249 290 123 45 chr1 88747799 88747954 -153916399 + MIR SINE MIR 2 168 -94 538 285 13 13 chr1 88748063 88748214 -153916139 - MIR SINE MIR -110 152 2 204 355 14 57 chr1 88750959 88751100 -153913253 - L2 LINE L2 -258 3055 2921 194 222 44 0 chr1 88751438 88751483 -153912870 + L2 LINE L2 3267 3313 0 233 301 19 0 chr1 88752894 88752997 -153911356 + MER103 DNA DNA 2 106 -60 2222 109 42 42 chr1 88753197 88753554 -153910799 + LTR18A LTR ERVL 1 357 0 2275 186 9 11 chr1 88753569 88754010 -153910343 + HERVL18 LTR ERVL 10 449 -5598 728 212 6 56 chr1 88754009 88754188 -153910165 + HERVL18 LTR ERVL 1150 1319 -4728 * 1220 151 16 0 chr1 88754182 88754374 -153909979 + HERVL18 LTR ERVL 1616 1810 -4237 * 1283 150 29 2 chr1 88754373 88754642 -153909711 + HERVL18 LTR ERVL 2119 2452 -3595 * 5191 151 36 2 chr1 88754641 88755473 -153908880 + HERVL18 LTR ERVL 2721 3580 -2467 674 106 11 0 chr1 88755474 88755568 -153908785 + HERVL18 LTR ERVL 4394 4488 -1559 3132 199 195 121 chr1 88755586 88757165 -153907188 - pTR5 LTR ERV1 0 2438 743 304 204 0 0 chr1 88757164 88757213 -153907140 + HERVL18 LTR ERVL 5219 5267 -780 * 250 178 0 0 chr1 88757213 88757258 -153907095 + HERVL18 LTR ERVL 5946 5990 -57 2239 145 23 6 chr1 88757370 88757721 -153906632 + LTR18A LTR ERVL 1 357 0 22 0 0 0 chr1 88757829 88757851 -153906502 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 88757897 88757927 -153906426 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr1 88758335 88758375 -153905978 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr1 88758750 88758786 -153905567 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr1 88759095 88759131 -153905222 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr1 88759225 88759267 -153905086 + AT_rich Low_complexity Low_complexity 1 42 0 23 86 0 0 chr1 88760020 88760078 -153904275 + AT_rich Low_complexity Low_complexity 1 58 0 259 236 42 0 chr1 88760424 88760496 -153903857 - HAL1b LINE L1 -39 1309 1235 23 0 0 0 chr1 88760539 88760562 -153903791 + AT_rich Low_complexity Low_complexity 1 23 0 353 274 94 0 chr1 88760851 88760957 -153903396 - L1ME3A LINE L1 -276 5894 5779 416 284 103 23 chr1 88761068 88761378 -153902975 - L1ME3A LINE L1 -537 5633 5299 443 286 88 79 chr1 88761509 88761928 -153902425 - L1ME3A LINE L1 -1096 5050 4628 192 77 0 0 chr1 88761940 88761966 -153902387 + (CA)n Simple_repeat Simple_repeat 1 26 0 745 313 96 15 chr1 88762024 88762641 -153901712 - L1ME3A LINE L1 -1617 4529 3863 1954 185 20 56 chr1 88762657 88762898 -153901455 - Tigger2a DNA MER2_type -2275 433 214 2287 123 24 24 chr1 88762898 88763273 -153901080 - THE1C LTR MaLR 0 375 1 1954 185 20 56 chr1 88763273 88763480 -153900873 - Tigger2a DNA MER2_type -2494 214 1 292 224 20 31 chr1 88763480 88763578 -153900775 + (TA)n Simple_repeat Simple_repeat 2 98 0 243 203 31 50 chr1 88763625 88763747 -153900606 - L1M4 LINE L1 -2191 3955 3833 32 57 0 0 chr1 88763766 88763819 -153900534 + AT_rich Low_complexity Low_complexity 1 53 0 580 345 39 45 chr1 88763819 88763945 -153900408 - L1M4 LINE L1 -3117 3029 2904 2356 95 0 0 chr1 88763945 88764251 -153900102 - AluY SINE Alu -5 306 1 580 345 39 45 chr1 88764251 88764588 -153899765 - L1M4 LINE L1 -3242 2904 2569 28 29 0 0 chr1 88766483 88766518 -153897835 + AT_rich Low_complexity Low_complexity 1 35 0 339 25 0 0 chr1 88766550 88766590 -153897763 + (CA)n Simple_repeat Simple_repeat 1 40 0 236 161 16 0 chr1 88767247 88767309 -153897044 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 193 337 108 24 chr1 88767716 88767799 -153896554 - L2 LINE L2 -40 3232 3143 633 291 30 43 chr1 88767853 88768083 -153896270 + MIR SINE MIR 36 262 0 291 368 0 0 chr1 88768731 88768818 -153895535 - MIR SINE MIR -109 153 67 192 282 183 28 chr1 88769265 88769407 -153894946 + MIR3 SINE MIR 42 205 -3 328 304 70 0 chr1 88769856 88769971 -153894382 + L2 LINE L2 3190 3312 -1 236 75 0 25 chr1 88769978 88770018 -153894335 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 304 311 46 49 chr1 88770300 88770606 -153893747 - L1MC/D LINE L1 -2238 5570 5266 2224 116 0 0 chr1 88770635 88770938 -153893415 - AluSg SINE Alu -7 303 1 1305 49 0 0 chr1 88771243 88771407 -153892946 - L1PA4 LINE L1 0 6155 5992 519 168 0 0 chr1 88771639 88771734 -153892619 - AluJ/FRAM SINE Alu -1 311 217 249 263 28 116 chr1 88771734 88772095 -153892258 - L1MC/D LINE L1 -1437 4709 4381 32 26 0 0 chr1 88773349 88773388 -153890965 + AT_rich Low_complexity Low_complexity 1 39 0 2189 89 3 7 chr1 88773558 88773849 -153890504 - AluSx SINE Alu -20 292 3 34 0 0 0 chr1 88773895 88773929 -153890424 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr1 88776258 88776282 -153888071 + AT_rich Low_complexity Low_complexity 1 24 0 377 284 122 54 chr1 88776404 88776626 -153887727 - L2 LINE L2 -1 3312 3076 1633 181 3 0 chr1 88776824 88777111 -153887242 + AluJb SINE Alu 1 288 -24 231 330 120 10 chr1 88777209 88777309 -153887044 + L2 LINE L2 3162 3272 0 24 0 0 0 chr1 88779349 88779373 -153884980 + AT_rich Low_complexity Low_complexity 1 24 0 7100 56 0 6 chr1 88780506 88781635 -153882718 + L1PA7 LINE L1 5022 6153 -1 658 321 65 12 chr1 88782187 88782433 -153881920 - MIR SINE MIR 0 262 4 499 243 18 9 chr1 88782595 88782706 -153881647 - L2 LINE L2 -1 3312 3201 2164 116 0 3 chr1 88784430 88784724 -153879629 + AluSc SINE Alu 1 293 -16 244 311 162 0 chr1 88784859 88785007 -153879346 - MIR SINE MIR -76 186 15 207 0 0 0 chr1 88885300 88885323 -153779030 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr1 88885637 88885659 -153778694 + (T)n Simple_repeat Simple_repeat 1 22 0 2340 94 3 0 chr1 88886564 88886873 -153777480 - AluSp SINE Alu -2 311 2 323 272 96 29 chr1 88886876 88887012 -153777341 - L2 LINE L2 -534 2780 2636 362 250 125 0 chr1 88888184 88888296 -153776057 - L1ME3A LINE L1 -51 6119 5994 480 263 257 11 chr1 88888303 88888478 -153775875 - HAL1 LINE L1 -1696 811 594 342 358 87 13 chr1 88888549 88888859 -153775494 - HAL1 LINE L1 -2044 463 131 25 31 0 0 chr1 88889071 88889103 -153775250 + AT_rich Low_complexity Low_complexity 1 32 0 973 299 126 54 chr1 88889118 88889548 -153774805 - HAL1 LINE L1 -604 1903 1506 243 0 0 0 chr1 88889548 88889575 -153774778 + (TG)n Simple_repeat Simple_repeat 2 28 0 973 299 126 54 chr1 88889575 88890410 -153773943 - HAL1 LINE L1 -1001 1506 546 438 343 48 30 chr1 88890483 88890815 -153773538 - HAL1 LINE L1 -2112 395 58 245 315 65 11 chr1 88890831 88890923 -153773430 + L2 LINE L2 3198 3294 -19 195 69 0 0 chr1 88891764 88891793 -153772560 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 73 24 0 chr1 88893970 88894011 -153770342 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 368 318 123 18 chr1 88894577 88894747 -153769606 + MIR3 SINE MIR 2 189 -19 260 255 128 71 chr1 88894791 88894932 -153769421 + L2 LINE L2 3160 3308 -5 315 267 69 0 chr1 88895628 88895729 -153768624 + L1MC4 LINE L1 6612 6719 -1323 399 278 0 0 chr1 88896866 88896963 -153767390 - MIR SINE MIR 0 262 166 201 365 43 0 chr1 88897045 88897160 -153767193 - MIR SINE MIR -121 141 22 1890 154 0 16 chr1 88897421 88897733 -153766620 + AluSx SINE Alu 1 307 -5 446 305 106 35 chr1 88897845 88898071 -153766282 + MIR SINE MIR 20 261 -1 716 328 173 42 chr1 88898092 88898584 -153765769 - L3 LINE CR1 -10 1567 1141 2041 146 3 3 chr1 88898584 88898893 -153765460 - AluJb SINE Alu -3 309 1 716 328 173 42 chr1 88898893 88899290 -153765063 - L3 LINE CR1 -436 1141 561 279 288 0 0 chr1 88899346 88899405 -153764948 + L1MC/D LINE L1 5600 5658 -2150 2860 7 0 0 chr1 88899946 88900256 -153764097 - AluYa5 SINE Alu -1 310 1 370 379 50 36 chr1 88900550 88901015 -153763338 - L2 LINE L2 -249 3023 2545 27 0 0 0 chr1 88902310 88902337 -153762016 + AT_rich Low_complexity Low_complexity 1 27 0 2066 123 150 11 chr1 88905428 88905801 -153758552 - MSTA LTR MaLR -3 425 1 9058 151 20 34 chr1 88905801 88907402 -153756951 - MSTA-int LTR MaLR 0 1580 3 999 193 108 72 chr1 88907404 88907594 -153756759 - MSTA LTR MaLR 0 375 193 252 0 0 0 chr1 88907594 88907622 -153756731 + (GA)n Simple_repeat Simple_repeat 1 28 0 999 193 108 72 chr1 88907622 88907793 -153756560 - MSTA LTR MaLR -182 193 1 1971 153 0 0 chr1 88908457 88908751 -153755602 - AluSp SINE Alu -6 307 14 2154 130 44 8 chr1 88909816 88910178 -153754175 + THE1C LTR MaLR 1 375 0 200 367 31 41 chr1 88910324 88910422 -153753931 + MIR SINE MIR 32 128 -134 23 0 0 0 chr1 88910754 88910777 -153753576 + AT_rich Low_complexity Low_complexity 1 23 0 239 154 0 19 chr1 88910887 88910939 -153753414 + (TA)n Simple_repeat Simple_repeat 1 51 0 295 288 0 0 chr1 88911112 88911178 -153753175 - L2 LINE L2 0 3272 3207 283 352 62 31 chr1 88911260 88911422 -153752931 + MIR3 SINE MIR 35 201 -7 213 132 0 0 chr1 88911422 88911460 -153752893 + (TC)n Simple_repeat Simple_repeat 1 38 0 28 102 0 0 chr1 88911563 88911661 -153752692 + AT_rich Low_complexity Low_complexity 1 98 0 1018 264 56 30 chr1 88911785 88912248 -153752105 + MLT1E LTR MaLR 25 593 0 793 222 0 23 chr1 88913439 88913610 -153750743 + FRAM SINE Alu 1 165 -11 348 24 0 0 chr1 88913877 88913918 -153750435 + (TG)n Simple_repeat Simple_repeat 2 42 0 872 141 0 0 chr1 88913919 88914047 -153750306 - AluSg/x SINE Alu -25 285 158 189 0 0 0 chr1 88914287 88914308 -153750045 + (TG)n Simple_repeat Simple_repeat 2 22 0 1712 145 67 0 chr1 88914309 88914578 -153749775 - AluSx SINE Alu -25 287 1 293 353 67 8 chr1 88914640 88914759 -153749594 - MIR SINE MIR -81 127 1 731 226 57 64 chr1 88915474 88915770 -153748583 + MLT1H LTR MaLR 42 335 -214 2361 173 19 2 chr1 88915793 88916214 -153748139 + MSTA LTR MaLR 1 428 0 2122 125 24 24 chr1 88916243 88916618 -153747735 + THE1C LTR MaLR 1 375 0 710 215 0 0 chr1 88916646 88916776 -153747577 + FLAM_A SINE Alu 4 133 0 255 315 28 0 chr1 88916776 88916873 -153747480 + MLT1H LTR MaLR 441 543 -12 1774 199 96 29 chr1 88917216 88917602 -153746751 + MLT2B3 LTR ERVL 1 412 -142 261 145 0 0 chr1 88917631 88917693 -153746660 + (TA)n Simple_repeat Simple_repeat 2 63 0 776 182 0 88 chr1 88917693 88917863 -153746490 + MLT2B3 LTR ERVL 400 554 0 188 236 56 67 chr1 88918591 88918680 -153745673 + L2 LINE L2 3182 3269 -3 808 256 118 99 chr1 88919420 88920020 -153744333 - MLT1G LTR MaLR 0 590 22 792 272 50 40 chr1 88920257 88920555 -153743798 + MLT2E LTR ERVL 312 612 -16 1742 264 104 38 chr1 88920673 88921472 -153742881 + L1MC4 LINE L1 7190 8041 -1 21 71 0 0 chr1 88922073 88922115 -153742238 + AT_rich Low_complexity Low_complexity 1 42 0 193 265 169 36 chr1 88922377 88922460 -153741893 - L2 LINE L2 -5 3308 3215 1983 147 2 117 chr1 88922984 88923177 -153741176 - Tigger2 DNA MER2_type 0 2718 2504 723 221 7 7 chr1 88923177 88923326 -153741027 - FRAM SINE Alu -15 151 3 1983 147 2 117 chr1 88923326 88923629 -153740724 - Tigger2 DNA MER2_type -214 2504 2 348 325 44 39 chr1 88923773 88924095 -153740258 - MLT1J LTR MaLR -64 447 82 1021 171 4 61 chr1 88924115 88924343 -153740010 - AluSg/x SINE Alu -11 299 85 223 321 73 9 chr1 88924474 88924583 -153739770 - L2 LINE L2 -221 3051 2936 355 227 165 0 chr1 88924731 88924828 -153739525 + FRAM SINE Alu 45 157 -9 229 236 0 34 chr1 88924860 88924949 -153739404 - L1M4 LINE L1 -886 5260 5175 352 216 0 11 chr1 88924963 88925051 -153739302 - L1M4 LINE L1 -3219 2927 2841 1891 128 4 11 chr1 88925075 88925356 -153738997 + AluSx SINE Alu 25 303 -9 2084 175 98 48 chr1 88925480 88925961 -153738392 - LTR22 LTR ERVK -4 505 1 1181 174 166 8 chr1 88926097 88926174 -153738179 + AluJb SINE Alu 3 66 -236 319 56 37 0 chr1 88926174 88926228 -153738125 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 1181 174 166 8 chr1 88926228 88926409 -153737944 + AluJb SINE Alu 66 302 0 1614 200 77 3 chr1 88929745 88930085 -153734268 + MLT1A1 LTR MaLR 1 365 0 1446 153 70 22 chr1 88930462 88930776 -153733577 - MER7A DNA MER2_type -19 327 1 239 409 56 7 chr1 88930776 88930918 -153733435 + L2 LINE L2 3123 3271 -1 2167 107 48 43 chr1 88931526 88931899 -153732454 + THE1C LTR MaLR 1 375 0 2080 116 0 27 chr1 88932945 88933258 -153731095 + AluSx SINE Alu 1 305 0 1759 350 92 22 chr1 88933640 88934962 -153729391 + L2 LINE L2 1486 2899 -415 363 44 0 0 chr1 88935092 88935137 -153729216 + (CA)n Simple_repeat Simple_repeat 2 46 0 815 315 40 22 chr1 88935204 88935528 -153728825 - MLT1J2 LTR MaLR -120 330 1 456 272 0 40 chr1 88935652 88935777 -153728576 + L2 LINE L2 3182 3301 -12 459 0 0 0 chr1 88937838 88937889 -153726464 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1138 229 27 116 chr1 88938023 88938617 -153725736 + L1MCc LINE L1 785 1325 -5098 315 0 0 0 chr1 88938623 88938658 -153725695 + (CA)n Simple_repeat Simple_repeat 2 36 0 683 245 29 0 chr1 88938821 88938960 -153725393 + MER5A DNA MER1_type 47 189 0 14195 173 46 88 chr1 88939342 88942283 -153722070 + L1PA16 LINE L1 2 2680 -4169 426 20 0 0 chr1 88942283 88942334 -153722019 + (CA)n Simple_repeat Simple_repeat 1 51 0 14195 173 46 88 chr1 88942334 88943688 -153720665 + L1PA16 LINE L1 2680 4090 -2759 5036 169 43 24 chr1 88943689 88945363 -153718990 + L1PA16 LINE L1 5182 6863 -6 28 48 0 0 chr1 88945665 88945707 -153718646 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 88946537 88946559 -153717794 + AT_rich Low_complexity Low_complexity 1 22 0 1913 158 10 3 chr1 88946704 88947002 -153717351 - AluSx SINE Alu -12 300 1 3207 216 12 33 chr1 88947235 88947984 -153716369 - MER44D DNA MER2_type 0 605 1 649 185 50 0 chr1 88948581 88948700 -153715653 + FLAM_C SINE Alu 1 125 -18 364 323 64 83 chr1 88949516 88949891 -153714462 + L3 LINE CR1 466 833 -744 22 0 0 0 chr1 88951036 88951058 -153713295 + AT_rich Low_complexity Low_complexity 1 22 0 234 306 142 22 chr1 88951575 88951709 -153712644 + L2 LINE L2 3163 3312 -1 201 389 61 22 chr1 88952378 88952558 -153711795 + L2 LINE L2 2553 2739 -575 1107 234 86 45 chr1 88953084 88953443 -153710910 + MLT1A2 LTR MaLR 1 374 0 2143 120 0 0 chr1 88953774 88954074 -153710279 - AluSx SINE Alu -7 305 6 24 67 0 0 chr1 88954385 88954430 -153709923 + AT_rich Low_complexity Low_complexity 1 45 0 320 328 88 28 chr1 88954498 88954852 -153709501 - L1ME LINE L1 -453 5668 5294 368 365 108 29 chr1 88955174 88955591 -153708762 - L2 LINE L2 -453 2861 2412 3547 169 115 3 chr1 88955825 88956567 -153707786 + LTR1B LTR ERV1 2 826 0 255 374 56 33 chr1 88957091 88957396 -153706957 - L2 LINE L2 -998 2316 2005 625 191 9 0 chr1 88959081 88959191 -153705162 - Tigger3(Golem) DNA MER2_type -2918 111 1 461 292 58 54 chr1 88959195 88959422 -153704931 - MIR SINE MIR -14 248 21 459 175 41 0 chr1 88959899 88959996 -153704357 - LTR16A LTR ERVL -66 384 284 910 210 12 6 chr1 88960063 88960230 -153704123 - MER58A DNA MER1_type 0 168 1 24 67 0 0 chr1 88960608 88960653 -153703700 + AT_rich Low_complexity Low_complexity 1 45 0 1054 176 124 52 chr1 88960680 88960930 -153703423 + AluJo SINE Alu 1 268 -44 21 36 0 0 chr1 88961183 88961211 -153703142 + AT_rich Low_complexity Low_complexity 1 28 0 271 234 26 39 chr1 88961280 88961357 -153702996 + L2 LINE L2 3223 3298 -15 28 0 0 0 chr1 88961951 88961979 -153702374 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 88962089 88962125 -153702228 + AT_rich Low_complexity Low_complexity 1 36 0 420 248 92 108 chr1 88962221 88962636 -153701717 - MLT2C2 LTR ERVL 0 464 57 * 654 205 35 49 chr1 88962440 88962653 -153701700 - MLT1E3 LTR MaLR -337 317 57 211 197 0 26 chr1 88963468 88963544 -153700809 + GA-rich Low_complexity Low_complexity 1 74 0 259 329 14 14 chr1 88964672 88964818 -153699535 + GA-rich Low_complexity Low_complexity 4 149 0 1056 125 62 0 chr1 88964990 88965150 -153699203 + AluJb SINE Alu 134 303 -9 1991 174 123 7 chr1 88965174 88965587 -153698766 + LOR1b LTR ERV1 1 461 0 541 253 104 11 chr1 88965688 88965870 -153698483 - MER63A DNA MER1_type -8 202 4 2679 30 0 3 chr1 88966724 88967053 -153697300 - L1PA4 LINE L1 -2214 3932 3605 * 11555 43 2 7 chr1 88967052 88969120 -153695233 + L1PA4 LINE L1 3953 6008 -147 392 339 63 16 chr1 88970244 88970371 -153693982 - MIR SINE MIR -64 144 15 265 346 19 19 chr1 88971114 88971221 -153693132 - L2 LINE L2 -243 3070 2964 664 309 73 21 chr1 88971221 88971561 -153692792 - L2 LINE L2 -68 3245 2888 469 362 115 14 chr1 88971536 88971970 -153692383 - L2 LINE L2 -549 2765 2288 * 22 0 0 0 chr1 88972088 88972110 -153692243 + AT_rich Low_complexity Low_complexity 1 22 0 1387 262 50 46 chr1 88973141 88973644 -153690709 + MLT1E3 LTR MaLR 112 616 -8 1227 277 42 15 chr1 88973671 88974072 -153690281 - LTR40a LTR ERVL -10 509 98 24 0 0 0 chr1 88974267 88974291 -153690062 + AT_rich Low_complexity Low_complexity 1 24 0 295 117 17 33 chr1 88975864 88975924 -153688429 + L1P LINE L1 5024 5082 -1064 27 29 0 0 chr1 88977125 88977159 -153687194 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr1 88978885 88978913 -153685440 + AT_rich Low_complexity Low_complexity 1 28 0 2619 39 0 0 chr1 88979129 88979440 -153684913 + AluY SINE Alu 1 311 0 229 186 0 0 chr1 88979862 88979905 -153684448 + (CTA)n Simple_repeat Simple_repeat 2 44 0 523 327 47 0 chr1 88979906 88980120 -153684233 - MIR SINE MIR -8 254 31 1878 147 7 0 chr1 88980226 88980512 -153683841 + AluSx SINE Alu 1 288 -24 236 141 141 71 chr1 88980916 88981001 -153683352 + L1ME4a LINE L1 5967 6057 -64 229 220 0 0 chr1 88981328 88981378 -153682975 + (TA)n Simple_repeat Simple_repeat 2 51 0 247 138 15 15 chr1 88981996 88982061 -153682292 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 222 288 55 0 chr1 88984214 88984287 -153680066 + MIR SINE MIR 96 172 -90 817 178 151 11 chr1 88984426 88984611 -153679742 + AluJb SINE Alu 85 295 -17 422 224 0 0 chr1 88985583 88985668 -153678685 + MER63 DNA MER1_type 676 760 -76 737 310 121 23 chr1 88985692 88986328 -153678025 + L2 LINE L2 2614 3311 -2 664 210 119 41 chr1 88987452 88987695 -153676658 + L1ME LINE L1 4673 4934 -1212 1086 163 0 0 chr1 88987695 88987944 -153676409 + (TA)n Simple_repeat Simple_repeat 1 249 0 227 152 0 0 chr1 88987944 88987990 -153676363 - LTR66 LTR ERVL -171 439 394 200 216 0 0 chr1 88987990 88988027 -153676326 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 460 259 76 91 chr1 88988101 88988504 -153675849 + L1ME LINE L1 5281 5676 -486 2257 66 16 35 chr1 88988504 88988821 -153675532 + AluY SINE Alu 1 311 0 460 259 76 91 chr1 88988821 88988931 -153675422 + L1ME LINE L1 5676 5786 -376 601 216 11 22 chr1 88988966 88989439 -153674914 + (CATATA)n Simple_repeat Simple_repeat 1 467 0 216 327 9 36 chr1 88989450 88989560 -153674793 + (CATATA)n Simple_repeat Simple_repeat 3 109 0 * 440 345 29 0 chr1 88989515 88989689 -153674664 + (CACG)n Simple_repeat Simple_repeat 2 180 0 255 333 9 18 chr1 88989696 88989807 -153674546 + (CATA)n Simple_repeat Simple_repeat 3 112 0 * 405 249 48 0 chr1 88989758 88989923 -153674430 + (TA)n Simple_repeat Simple_repeat 2 174 0 1521 169 21 25 chr1 88990331 88990615 -153673738 - MLT2B1 LTR ERVL -237 283 1 23 0 0 0 chr1 88990826 88990849 -153673504 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 88991269 88991301 -153673052 + AT_rich Low_complexity Low_complexity 1 32 0 25019 82 10 6 chr1 88992370 88994228 -153670125 + L1P3 LINE L1 1826 3674 -2480 279 0 0 0 chr1 88994228 88994259 -153670094 + (CA)n Simple_repeat Simple_repeat 2 32 0 25019 82 10 6 chr1 88994259 88996220 -153668133 + L1P3 LINE L1 3674 5662 -492 4201 71 0 2 chr1 88996222 88996773 -153667580 + L1PA7 LINE L1 5599 6148 -6 2194 82 7 0 chr1 88996987 88997309 -153667044 + AluSx SINE Alu 1 324 0 237 65 0 0 chr1 88998085 88998116 -153666237 + (TA)n Simple_repeat Simple_repeat 2 32 0 979 178 30 10 chr1 88998968 88999170 -153665183 + MER3 DNA MER1_type 4 209 0 211 143 0 24 chr1 88999900 88999942 -153664411 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 271 326 34 0 chr1 89000058 89000147 -153664206 + MIR SINE MIR 141 232 -30 22 35 0 0 chr1 89000943 89000972 -153663381 + AT_rich Low_complexity Low_complexity 1 29 0 207 278 19 0 chr1 89001445 89001499 -153662854 + (TAG)n Simple_repeat Simple_repeat 1 55 0 3876 113 9 0 chr1 89002283 89002977 -153661376 - L1PA8A LINE L1 -657 5474 4775 4836 86 1 5 chr1 89002979 89003633 -153660720 + L1PA8A LINE L1 5479 6130 -1 261 204 0 0 chr1 89005267 89005316 -153659037 + MIR SINE MIR 214 262 0 258 239 23 23 chr1 89006122 89006210 -153658143 + CT-rich Low_complexity Low_complexity 1 88 0 2401 78 0 3 chr1 89006266 89006573 -153657780 - AluSc SINE Alu -3 306 1 511 218 97 36 chr1 89007130 89007295 -153657058 - MIR SINE MIR -57 205 31 206 202 32 11 chr1 89009526 89009620 -153654733 + CT-rich Low_complexity Low_complexity 1 96 0 1847 106 91 7 chr1 89010660 89010934 -153653419 + AluSx SINE Alu 5 301 -11 201 98 0 49 chr1 89011443 89011484 -153652869 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 574 254 58 100 chr1 89011534 89011794 -153652559 - MLT1H LTR MaLR -171 378 130 567 278 45 90 chr1 89011899 89012144 -153652209 - MIR SINE MIR -28 234 1 1147 311 54 32 chr1 89014008 89014567 -153649786 + HERV16 LTR ERVL 8 578 -4418 767 260 42 5 chr1 89014656 89014848 -153649505 + MLT1A1 LTR MaLR 167 365 0 297 120 20 0 chr1 89015312 89015362 -153648991 - LTR47A LTR ERVL 0 452 402 702 347 42 3 chr1 89015389 89015674 -153648679 + LTR16A LTR ERVL 126 421 -29 881 273 55 9 chr1 89016320 89016664 -153647689 - L1ME3 LINE L1 -2 6094 5735 366 215 99 111 chr1 89016795 89016925 -153647428 - LTR68 LTR ERV1 -274 466 337 1811 168 24 0 chr1 89016925 89017217 -153647136 + AluJb SINE Alu 1 299 -13 366 215 99 111 chr1 89017217 89017258 -153647095 - LTR68 LTR ERV1 -403 337 297 241 175 0 18 chr1 89017391 89017448 -153646905 - LTR68 LTR ERV1 -682 58 3 861 322 23 3 chr1 89017457 89017761 -153646592 - L1ME3 LINE L1 -359 5737 5428 331 353 32 13 chr1 89017774 89017930 -153646423 - L1ME3 LINE L1 -4803 1458 1300 228 265 43 17 chr1 89017997 89018114 -153646239 - L1ME3 LINE L1 -4862 1208 1089 651 283 108 83 chr1 89018198 89018678 -153645675 + MLT1H LTR MaLR 50 541 -8 328 267 123 15 chr1 89018717 89019043 -153645310 - L1ME3 LINE L1 -5053 1017 657 1750 182 39 17 chr1 89019056 89019413 -153644940 + MLT1A1 LTR MaLR 1 365 0 934 49 58 4 chr1 89020004 89020235 -153644118 + (TAGA)n Simple_repeat Simple_repeat 1 243 0 706 225 136 23 chr1 89020253 89020511 -153643842 - L2 LINE L2 -1263 2051 1765 3771 170 27 14 chr1 89020927 89021661 -153642692 - L1PA16 LINE L1 -9 6157 5414 294 320 39 29 chr1 89021662 89021765 -153642588 + L2 LINE L2 3169 3272 0 347 0 0 23 chr1 89022420 89022464 -153641889 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1884 136 11 4 chr1 89022467 89022747 -153641606 - AluSx SINE Alu -30 282 1 222 325 92 33 chr1 89023184 89023304 -153641049 - L2 LINE L2 0 3272 3146 508 71 0 0 chr1 89023317 89023387 -153640966 + Alu SINE Alu 1 70 -240 2102 89 4 11 chr1 89023387 89023667 -153640686 + AluY SINE Alu 20 297 -14 267 267 111 50 chr1 89025232 89025412 -153638941 + L1ME LINE L1 5629 5819 -302 333 333 202 25 chr1 89025464 89025830 -153638523 - L2 LINE L2 0 3313 2883 1284 256 70 50 chr1 89026042 89026746 -153637607 - Charlie7 DNA MER1_type -81 2531 1814 1644 188 98 118 chr1 89026746 89026924 -153637429 - L1MD3 LINE L1 -86 7909 7729 2402 123 11 26 chr1 89026924 89027305 -153637048 - THE1C LTR MaLR 0 375 1 1644 188 98 118 chr1 89027305 89027717 -153636636 - L1MD3 LINE L1 -266 7729 7331 643 380 12 4 chr1 89028607 89028852 -153635501 + MIR SINE MIR 3 249 -13 29 0 0 0 chr1 89031496 89031525 -153632828 + AT_rich Low_complexity Low_complexity 1 29 0 191 303 214 0 chr1 89032258 89032347 -153632006 + L2 LINE L2 3165 3272 0 538 292 55 118 chr1 89033198 89033674 -153630679 - MLT1J LTR MaLR -63 448 3 24 53 0 0 chr1 89035252 89035290 -153629063 + AT_rich Low_complexity Low_complexity 1 38 0 7154 132 34 42 chr1 89035292 89036601 -153627752 + HSMAR2 DNA Mariner 2 1299 -3 255 275 34 90 chr1 89037650 89037828 -153626525 + MLT1H LTR MaLR 110 277 -272 240 297 79 0 chr1 89038062 89038163 -153626190 + MLT1H LTR MaLR 475 583 -7 48 67 0 0 chr1 89038425 89038515 -153625838 + AT_rich Low_complexity Low_complexity 1 90 0 731 273 83 77 chr1 89040173 89040690 -153623663 - MLT1G1 LTR MaLR 0 595 76 1484 214 111 14 chr1 89041928 89042353 -153622000 - MLT1C LTR MaLR 0 467 2 338 271 84 59 chr1 89043413 89043616 -153620737 - L1M4 LINE L1 -925 5221 5014 226 254 16 0 chr1 89043741 89043804 -153620549 - MER92C LTR ERV1 0 554 491 230 222 86 74 chr1 89043986 89044067 -153620286 - MER92B LTR ERV1 -554 82 1 255 263 216 5 chr1 89044134 89044324 -153620029 - L1M4 LINE L1 -1355 4791 4562 416 274 66 54 chr1 89044589 89044736 -153619617 - L1ME LINE L1 -316 5805 5652 897 223 104 0 chr1 89044736 89044938 -153619415 + MER58A DNA MER1_type 1 223 -1 416 274 66 54 chr1 89044938 89045031 -153619322 - L1ME LINE L1 -469 5652 5562 1610 37 0 41 chr1 89046633 89046851 -153617502 - L1PA5 LINE L1 -17 6137 5929 267 267 111 50 chr1 89048069 89048249 -153616104 + L1ME LINE L1 5629 5819 -302 364 336 169 22 chr1 89048301 89048822 -153615531 - L2 LINE L2 0 3313 2709 375 297 29 43 chr1 89048933 89049071 -153615282 + L2 LINE L2 3137 3272 0 13005 147 21 8 chr1 89049113 89051248 -153613105 + Tigger1 DNA MER2_type 1 2162 -256 6401 146 67 7 chr1 89051248 89052404 -153611949 + Tigger3b DNA MER2_type 1 1225 -6 1545 187 35 47 chr1 89054098 89054441 -153609912 - MER2 DNA MER2_type -5 340 2 24 91 0 0 chr1 89054447 89054513 -153609840 + AT_rich Low_complexity Low_complexity 1 66 0 631 258 110 14 chr1 89055050 89055259 -153609094 + MIR SINE MIR 32 260 -2 1578 187 24 3 chr1 89055806 89056095 -153608258 + AluJb SINE Alu 1 295 -17 40 0 0 0 chr1 89056095 89056135 -153608218 + AT_rich Low_complexity Low_complexity 1 40 0 363 278 102 0 chr1 89056858 89056966 -153607387 + L2 LINE L2 3150 3268 -4 426 53 0 0 chr1 89057269 89057326 -153607027 + (CA)n Simple_repeat Simple_repeat 1 57 0 339 303 158 13 chr1 89057400 89057552 -153606801 + MIR SINE MIR 38 211 -51 2321 51 0 0 chr1 89059070 89059346 -153605007 - AluY SINE Alu -10 301 26 1275 275 62 33 chr1 89059870 89060620 -153603733 - L1ME LINE L1 -391 5771 4998 688 266 122 43 chr1 89060617 89060993 -153603360 + L1ME3 LINE L1 5751 6156 -6 * 1337 189 89 86 chr1 89061550 89061971 -153602382 - MLT1B LTR MaLR 0 505 1 1062 206 14 23 chr1 89062856 89063074 -153601279 - AluJo SINE Alu -10 302 87 2276 97 0 3 chr1 89063429 89063727 -153600626 - AluSx SINE Alu -15 297 1 1686 205 16 30 chr1 89063874 89064245 -153600108 + MLT1B LTR MaLR 3 368 -22 229 404 18 0 chr1 89064604 89064718 -153599635 - MIR SINE MIR -76 132 17 216 269 75 32 chr1 89065932 89066025 -153598328 - MIR SINE MIR -108 154 58 277 122 0 0 chr1 89066797 89066838 -153597515 + 5S rRNA rRNA 2 42 -79 27 29 0 0 chr1 89066966 89067000 -153597353 + AT_rich Low_complexity Low_complexity 1 34 0 2030 129 10 0 chr1 89067866 89068175 -153596178 - AluSx SINE Alu 0 312 1 2030 136 7 0 chr1 89068195 89068504 -153595849 - AluSp SINE Alu -1 312 2 264 30 0 0 chr1 89068514 89068547 -153595806 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 397 159 16 0 chr1 89068548 89068611 -153595742 - FLAM SINE Alu -15 118 55 415 319 79 28 chr1 89068641 89068822 -153595531 + MIR SINE MIR 28 223 -39 2038 131 0 26 chr1 89068822 89069135 -153595218 + AluSx SINE Alu 1 305 -7 415 319 79 28 chr1 89069135 89069169 -153595184 + MIR SINE MIR 223 254 -8 235 258 71 76 chr1 89070213 89070411 -153593942 + L1MCc LINE L1 1164 1515 -5063 * 5573 151 35 31 chr1 89070384 89072395 -153591958 + L1MA5 LINE L1 5080 7093 -2 706 276 61 71 chr1 89072480 89073249 -153591104 + L1MCc LINE L1 1679 2440 -4682 390 101 0 0 chr1 89073249 89073318 -153591035 + (TAAA)n Simple_repeat Simple_repeat 2 70 0 706 276 61 71 chr1 89073318 89073388 -153590965 + L1MCc LINE L1 2440 2509 -4613 353 234 102 29 chr1 89073431 89073568 -153590785 - L1M4 LINE L1 -3789 2357 2211 34 40 0 40 chr1 89073658 89073732 -153590621 + AT_rich Low_complexity Low_complexity 1 71 0 198 103 0 0 chr1 89073748 89073777 -153590576 + (TG)n Simple_repeat Simple_repeat 2 30 0 1415 191 84 76 chr1 89074829 89075211 -153589142 + MLT1B LTR MaLR 1 385 -5 237 108 0 0 chr1 89075508 89075545 -153588808 + (TA)n Simple_repeat Simple_repeat 1 37 0 43439 40 2 2 chr1 89075742 89081888 -153582465 - L1PA3 LINE L1 0 6155 5 306 308 148 22 chr1 89082636 89082818 -153581535 + MIR SINE MIR 2 206 -56 216 0 0 0 chr1 89083303 89083327 -153581026 + (A)n Simple_repeat Simple_repeat 1 24 0 1159 198 9 4 chr1 89083529 89083756 -153580597 + AluJb SINE Alu 83 310 -2 23 0 0 0 chr1 89086460 89086483 -153577870 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr1 89086902 89086948 -153577405 + AT_rich Low_complexity Low_complexity 1 46 0 200 345 12 0 chr1 89087152 89087236 -153577117 - MIR SINE MIR -3 259 175 276 359 55 21 chr1 89087245 89087390 -153576963 - MIR SINE MIR -64 198 49 21963 30 0 6 chr1 89088189 89091650 -153572703 + L1PA3 LINE L1 2702 6153 -2 1161 291 48 35 chr1 89092131 89092668 -153571685 + MLT1E3-int LTR MaLR 119 662 -709 493 263 43 97 chr1 89092815 89093093 -153571260 + MLT1E3-int LTR MaLR 1108 1370 -1 1508 219 84 77 chr1 89093094 89093650 -153570703 + MLT1E3 LTR MaLR 1 560 -64 576 174 0 0 chr1 89093757 89093878 -153570475 + GA-rich Low_complexity Low_complexity 3 123 0 24 53 0 0 chr1 89094200 89094238 -153570115 + AT_rich Low_complexity Low_complexity 1 38 0 28 79 0 0 chr1 89094826 89094889 -153569464 + AT_rich Low_complexity Low_complexity 1 63 0 639 288 60 0 chr1 89095032 89095247 -153569106 + MIR SINE MIR 3 230 -32 182 294 0 0 chr1 89095276 89095327 -153569026 - L2 LINE L2 -4 3309 3259 205 260 0 0 chr1 89096307 89096357 -153567996 + GA-rich Low_complexity Low_complexity 5 54 0 348 127 0 0 chr1 89096363 89096418 -153567935 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 238 121 0 0 chr1 89097435 89097468 -153566885 - L2 LINE L2 -87 3226 3194 1351 107 56 183 chr1 89097767 89098123 -153566230 - AluSq SINE Alu 0 313 3 308 311 0 67 chr1 89098190 89098325 -153566028 - L2 LINE L2 -4 3309 3184 21 36 0 0 chr1 89098840 89098868 -153565485 + AT_rich Low_complexity Low_complexity 1 28 0 363 208 28 0 chr1 89099070 89099142 -153565211 - MER65C LTR ERV1 -379 82 9 1077 228 107 15 chr1 89099151 89099414 -153564939 + AluJo SINE Alu 1 287 -15 28 0 0 0 chr1 89099414 89099442 -153564911 + AT_rich Low_complexity Low_complexity 1 28 0 374 0 22 0 chr1 89099714 89099760 -153564593 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 569 316 92 42 chr1 89099795 89100848 -153563505 + L1MEd LINE L1 534 1536 -4681 706 264 145 7 chr1 89101124 89101400 -153562953 + MER5C DNA MER1_type 10 323 -1 617 304 55 68 chr1 89101487 89101902 -153562451 + L1MEd LINE L1 2074 2483 -3913 956 323 68 58 chr1 89102050 89103094 -153561259 + L1MEd LINE L1 3103 4157 -2058 404 182 11 0 chr1 89103112 89103200 -153561153 + (TATG)n Simple_repeat Simple_repeat 2 90 0 30 45 0 0 chr1 89103218 89103262 -153561091 + AT_rich Low_complexity Low_complexity 1 44 0 1376 259 22 6 chr1 89103545 89103904 -153560449 - MLT1A1 LTR MaLR 0 365 1 1959 116 17 7 chr1 89104215 89104508 -153559845 - AluSx SINE Alu -16 296 1 6233 129 32 84 chr1 89104712 89106010 -153558343 - Tigger3b DNA MER2_type 0 1231 2 2437 218 12 12 chr1 89107461 89107980 -153556373 + LTR53 LTR ERVL 1 519 0 28 0 0 0 chr1 89107989 89108017 -153556336 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr1 89109129 89109166 -153555187 + AT_rich Low_complexity Low_complexity 1 37 0 588 323 39 39 chr1 89110059 89110369 -153553984 - HERV16 LTR ERVL -4155 841 532 17586 173 60 25 chr1 89110373 89116482 -153547871 - L1 LINE L1 -1228 6337 17 1668 203 44 11 chr1 89116711 89117075 -153547278 + MLT2C2 LTR ERVL 1 376 -88 282 59 0 0 chr1 89117078 89117112 -153547241 + MLT2C2 LTR ERVL 482 515 0 1440 189 0 66 chr1 89117268 89117570 -153546783 - AluJo SINE Alu -30 282 1 281 274 8 17 chr1 89117581 89117698 -153546655 + L1MEd LINE L1 1031 1146 -5059 326 286 113 11 chr1 89118031 89118216 -153546137 + L1MEd LINE L1 2087 2290 -4106 35 0 0 0 chr1 89118259 89118294 -153546059 + AT_rich Low_complexity Low_complexity 1 35 0 778 173 65 0 chr1 89118861 89119000 -153545353 + FAM SINE Alu 20 167 -18 21 36 0 0 chr1 89119320 89119348 -153545005 + AT_rich Low_complexity Low_complexity 1 28 0 2018 126 47 41 chr1 89119641 89120005 -153544348 - THE1C LTR MaLR -9 366 1 222 37 0 0 chr1 89120185 89120212 -153544141 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 189 267 17 17 chr1 89120711 89120771 -153543582 + L2 LINE L2 3254 3313 0 225 0 0 0 chr1 89122728 89122753 -153541600 + (A)n Simple_repeat Simple_repeat 1 25 0 752 254 47 19 chr1 89123000 89123213 -153541140 - MER20 DNA MER1_type 0 219 1 267 215 0 0 chr1 89123486 89123551 -153540802 + (TATG)n Simple_repeat Simple_repeat 2 66 0 814 128 7 57 chr1 89123553 89123694 -153540659 - AluSg/x SINE Alu -20 289 156 1544 202 85 32 chr1 89123824 89124234 -153540119 - MSTB1 LTR MaLR 0 432 1 235 247 141 35 chr1 89124246 89124331 -153540022 - MIR SINE MIR -61 201 108 448 309 19 12 chr1 89125790 89125952 -153538401 - MLT1J2 LTR MaLR -286 164 2 25 0 0 0 chr1 89126867 89126892 -153537461 + AT_rich Low_complexity Low_complexity 1 25 0 392 270 70 79 chr1 89127115 89127330 -153537023 + MER112 DNA MER1_type 5 217 -43 208 300 0 0 chr1 89127623 89127673 -153536680 + MIR SINE MIR 109 158 -104 448 272 95 41 chr1 89128086 89128255 -153536098 - MIR SINE MIR -71 191 14 740 192 75 0 chr1 89128410 89128556 -153535797 - MER3 DNA MER1_type 0 209 53 32 103 0 0 chr1 89128791 89128907 -153535446 + AT_rich Low_complexity Low_complexity 1 116 0 260 298 105 18 chr1 89129109 89129223 -153535130 + L2 LINE L2 3190 3313 0 264 298 50 33 chr1 89129750 89129871 -153534482 - MIR SINE MIR -54 208 86 391 321 44 28 chr1 89130214 89130535 -153533818 - L1ME4a LINE L1 -263 5858 5533 299 286 116 20 chr1 89131076 89131223 -153533130 + MIR SINE MIR 91 251 -11 219 379 0 0 chr1 89132586 89132718 -153531635 + (CCA)n Simple_repeat Simple_repeat 1 132 0 380 340 77 7 chr1 89133639 89133859 -153530494 - MIR SINE MIR -21 241 6 207 290 84 19 chr1 89134044 89134151 -153530202 - L2 LINE L2 0 3313 3200 226 358 20 65 chr1 89135161 89135362 -153528991 - MIR SINE MIR -35 227 36 2646 32 0 3 chr1 89136380 89136688 -153527665 - AluY SINE Alu -3 308 2 23 54 0 0 chr1 89137586 89137623 -153526730 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 89137697 89137726 -153526627 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr1 89137859 89137890 -153526463 + AT_rich Low_complexity Low_complexity 1 31 0 527 29 0 14 chr1 89138592 89138662 -153525691 + (TA)n Simple_repeat Simple_repeat 1 69 0 7664 88 7 5 chr1 89140012 89141867 -153522486 - L1PA7 LINE L1 0 6154 4292 35 41 0 0 chr1 89142597 89142646 -153521707 + AT_rich Low_complexity Low_complexity 1 49 0 1117 284 121 6 chr1 89143181 89143687 -153520666 + L2 LINE L2 2525 3092 -221 363 136 0 0 chr1 89144179 89144238 -153520115 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr1 89144517 89144540 -153519813 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 89145812 89145834 -153518519 + AT_rich Low_complexity Low_complexity 1 22 0 2097 132 3 0 chr1 89146308 89146612 -153517741 + AluY SINE Alu 1 305 -6 21 0 0 0 chr1 89147190 89147211 -153517142 + AT_rich Low_complexity Low_complexity 1 21 0 1531 289 50 43 chr1 89148502 89148587 -153515766 - L1ME3A LINE L1 -38 6132 6049 1980 149 0 0 chr1 89148587 89148889 -153515464 + AluSx SINE Alu 11 312 0 1531 289 50 43 chr1 89148889 89149057 -153515296 - L1ME3A LINE L1 -121 6049 5884 616 259 101 53 chr1 89149057 89149412 -153514941 + MLT1A2 LTR MaLR 1 372 -2 1531 289 50 43 chr1 89149412 89149905 -153514448 - L1ME3A LINE L1 -286 5884 5380 303 272 87 24 chr1 89149981 89150187 -153514166 - L1ME3A LINE L1 -917 5229 5011 368 208 75 25 chr1 89150282 89150402 -153513951 - L1ME3A LINE L1 -3744 2402 2277 738 260 96 83 chr1 89150614 89150685 -153513668 + MLT1H1 LTR MaLR 52 121 -434 1732 154 3 58 chr1 89150685 89151015 -153513338 + AluJo SINE Alu 1 312 0 738 260 96 83 chr1 89151015 89151400 -153512953 + MLT1H1 LTR MaLR 121 514 -41 637 346 55 58 chr1 89151419 89152006 -153512347 + L2 LINE L2 2218 2802 -512 365 319 38 19 chr1 89152177 89152334 -153512019 - MIR SINE MIR -44 218 59 367 309 43 22 chr1 89152731 89152867 -153511486 + MLT1J LTR MaLR 51 169 -281 1054 226 41 41 chr1 89153722 89153884 -153510469 - Charlie5 DNA MER1_type 0 2624 2463 2009 100 4 4 chr1 89153884 89154165 -153510188 + AluSc SINE Alu 24 304 -5 1054 226 41 41 chr1 89154165 89154370 -153509983 - Charlie5 DNA MER1_type -160 2464 2257 517 258 0 0 chr1 89154371 89154491 -153509862 - Charlie5 DNA MER1_type -2488 124 5 2871 265 57 24 chr1 89154941 89155942 -153508411 + L1MEc LINE L1 37 1070 -5326 833 276 100 68 chr1 89156129 89156763 -153507590 + L1MEc LINE L1 1147 1971 -4425 389 188 16 0 chr1 89156770 89156834 -153507519 - MER2 DNA MER2_type -10 335 271 1250 114 59 25 chr1 89156863 89157065 -153507288 - MER2 DNA MER2_type -135 210 2 1038 233 47 19 chr1 89157073 89157395 -153506958 + L1MEc LINE L1 1974 2304 -4092 254 333 14 0 chr1 89157531 89157603 -153506750 - MIR SINE MIR -43 219 147 193 274 78 0 chr1 89158087 89158138 -153506215 + MER5C DNA MER1_type 1 55 -269 208 235 15 15 chr1 89158205 89158273 -153506080 + MER5C DNA MER1_type 220 287 -37 262 368 18 18 chr1 89158478 89158592 -153505761 + MIR SINE MIR 12 125 -137 1761 232 85 11 chr1 89159183 89159653 -153504700 - MLT1D LTR MaLR 0 505 1 22 0 0 0 chr1 89160311 89160333 -153504020 + AT_rich Low_complexity Low_complexity 1 22 0 237 193 18 18 chr1 89160858 89160915 -153503438 + L2 LINE L2 3256 3312 -1 686 312 68 36 chr1 89161117 89161502 -153502851 + MLT1I LTR MaLR 13 409 0 31 26 0 0 chr1 89161576 89161614 -153502739 + AT_rich Low_complexity Low_complexity 1 38 0 292 321 29 29 chr1 89161692 89161832 -153502521 - MIR SINE MIR -108 154 15 2036 233 38 23 chr1 89162628 89163203 -153501150 + L1MC4a LINE L1 5761 7801 -7 1744 215 32 38 chr1 89163397 89163867 -153500486 + MLT1C LTR MaLR 1 467 0 4620 138 61 19 chr1 89163995 89164729 -153499624 + L1PA16 LINE L1 4675 5377 -789 1790 192 32 60 chr1 89164729 89165166 -153499187 - MSTB LTR MaLR -1 425 1 4620 138 61 19 chr1 89165166 89165881 -153498472 + L1PA16 LINE L1 5377 6162 -4 252 0 0 0 chr1 89166292 89166320 -153498033 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1067 156 105 71 chr1 89167218 89167456 -153496897 - AluJo SINE Alu -28 284 39 460 321 43 27 chr1 89167488 89167675 -153496678 + MIR SINE MIR 65 254 -8 1040 249 78 19 chr1 89168227 89168548 -153495805 - MER58B DNA MER1_type -1 340 1 315 71 0 0 chr1 89169431 89169473 -153494880 + (CA)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr1 89170119 89170141 -153494212 + AT_rich Low_complexity Low_complexity 1 22 0 1334 199 0 4 chr1 89170714 89170950 -153493403 + AluJb SINE Alu 57 293 -19 198 0 0 0 chr1 89170950 89170972 -153493381 + (CCA)n Simple_repeat Simple_repeat 1 22 0 605 130 22 0 chr1 89173092 89173184 -153491169 + Tigger4(Zombi) DNA MER2_type 1 94 -2637 * 2892 109 2 94 chr1 89173178 89173700 -153490653 + Tigger4(Zombi) DNA MER2_type 1870 2343 -388 24 0 0 0 chr1 89173705 89173729 -153490624 + AT_rich Low_complexity Low_complexity 1 24 0 328 162 0 54 chr1 89173729 89173803 -153490550 - Tigger4(Zombi) DNA MER2_type -527 2204 2135 * 332 125 97 0 chr1 89173801 89173873 -153490480 + Tigger4(Zombi) DNA MER2_type 2295 2373 -358 537 112 0 61 chr1 89173878 89173976 -153490377 - Tigger4(Zombi) DNA MER2_type -527 2204 2113 365 130 20 20 chr1 89174000 89174100 -153490253 + (TA)n Simple_repeat Simple_repeat 2 101 0 390 21 0 0 chr1 89174100 89174147 -153490206 + (GA)n Simple_repeat Simple_repeat 2 48 0 1133 102 18 18 chr1 89174149 89174315 -153490038 - AluSc SINE Alu -62 247 82 2419 161 0 0 chr1 89174315 89174712 -153489641 + Tigger4(Zombi) DNA MER2_type 2335 2731 0 2183 73 6 63 chr1 89175378 89175695 -153488658 + AluY SINE Alu 1 299 -12 1533 78 0 10 chr1 89176095 89176299 -153488054 + AluY SINE Alu 110 311 0 23 0 0 0 chr1 89176415 89176438 -153487915 + AT_rich Low_complexity Low_complexity 1 23 0 2600 52 0 0 chr1 89176601 89176907 -153487446 - AluY SINE Alu -5 306 1 189 94 0 0 chr1 89177742 89177774 -153486579 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr1 89178286 89178308 -153486045 + AT_rich Low_complexity Low_complexity 1 22 0 2128 128 16 0 chr1 89178611 89178916 -153485437 + AluSx SINE Alu 1 310 -2 2255 96 0 0 chr1 89179504 89179796 -153484557 + AluSg SINE Alu 1 292 -18 22 35 0 0 chr1 89180405 89180434 -153483919 + AT_rich Low_complexity Low_complexity 1 29 0 672 79 0 11 chr1 89181665 89181754 -153482599 - L1P LINE L1 -6029 117 30 12807 37 2 2 chr1 89181754 89184142 -153480211 + L1PA5 LINE L1 3775 6151 -3 276 30 0 0 chr1 89184834 89184867 -153479486 + (TG)n Simple_repeat Simple_repeat 2 34 0 219 191 32 96 chr1 89186140 89186234 -153478119 - L2 LINE L2 -188 3084 2997 217 125 25 0 chr1 89186487 89186527 -153477826 + MER91 DNA MER1_type 1 41 -149 1758 178 0 7 chr1 89187022 89187315 -153477038 - AluSx SINE Alu -21 291 1 395 345 5 37 chr1 89188034 89188225 -153476128 - MLT1J LTR MaLR -35 476 292 2438 39 0 0 chr1 89188590 89188893 -153475460 + AluY SINE Alu 2 304 0 2224 115 0 3 chr1 89189192 89189505 -153474848 + AluSx SINE Alu 1 312 0 306 0 0 0 chr1 89189510 89189544 -153474809 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr1 89190356 89190377 -153473976 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr1 89190657 89190681 -153473672 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 378 83 42 0 chr1 89190726 89190798 -153473555 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 845 302 107 37 chr1 89191136 89191652 -153472701 - MLT1G1 LTR MaLR -9 586 35 361 231 86 77 chr1 89192405 89192626 -153471727 - L1MC5 LINE L1 -743 7218 6996 738 260 82 72 chr1 89192661 89192980 -153471373 + MLT1F1 LTR MaLR 63 384 -183 700 212 76 70 chr1 89193062 89193334 -153471019 - L1MC5 LINE L1 -1005 6803 6654 871 191 15 143 chr1 89193334 89193607 -153470746 - MER8 DNA MER2_type 0 239 2 700 212 76 70 chr1 89193607 89193788 -153470565 - L1MC5 LINE L1 -1154 6654 6476 187 241 138 0 chr1 89194424 89194482 -153469871 - MIR SINE MIR -13 249 184 2545 96 19 19 chr1 89194488 89194863 -153469490 - THE1C LTR MaLR 0 375 1 2203 191 28 72 chr1 89194884 89195230 -153469123 + MER82 DNA MER2_type 8 323 -330 7341 35 13 0 chr1 89195230 89196293 -153468060 - L1PA5 LINE L1 0 6154 5082 2203 191 28 72 chr1 89196293 89196489 -153467864 + MER82 DNA MER2_type 323 526 -127 284 278 9 111 chr1 89196913 89197021 -153467332 + MER5B DNA MER1_type 79 175 -3 6070 69 3 74 chr1 89197098 89198090 -153466263 - L1PA8A LINE L1 0 6131 5199 186 288 163 12 chr1 89198134 89198214 -153466139 + MIR SINE MIR 158 249 -13 188 362 92 23 chr1 89199186 89199360 -153464993 - L3 LINE CR1 -1056 521 336 579 298 83 29 chr1 89201805 89202047 -153462306 - MIR SINE MIR 0 262 10 555 159 0 21 chr1 89202285 89202430 -153461923 + G-rich Low_complexity Low_complexity 2 143 0 196 386 10 10 chr1 89202576 89202677 -153461676 + MER5A DNA MER1_type 61 161 -28 7103 125 9 10 chr1 89202854 89204244 -153460109 + L1MA2 LINE L1 4913 6299 -5 22 35 0 0 chr1 89204247 89204276 -153460077 + AT_rich Low_complexity Low_complexity 1 29 0 2080 111 0 0 chr1 89204276 89204555 -153459798 + AluSg SINE Alu 1 279 -31 486 0 0 0 chr1 89204559 89204613 -153459740 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 203 344 69 23 chr1 89204683 89204814 -153459539 + MIR SINE MIR 62 198 -64 210 37 0 0 chr1 89206207 89206234 -153458119 + (GA)n Simple_repeat Simple_repeat 1 27 0 26 64 0 0 chr1 89206273 89206320 -153458033 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr1 89209221 89209246 -153455107 + AT_rich Low_complexity Low_complexity 1 25 0 2250 96 3 0 chr1 89210242 89210535 -153453818 - AluSp SINE Alu -19 294 1 29 0 0 0 chr1 89212357 89212386 -153451967 + AT_rich Low_complexity Low_complexity 1 29 0 241 320 0 113 chr1 89212548 89212698 -153451655 - L2 LINE L2 -5 3308 3176 23 0 0 0 chr1 89213089 89213112 -153451241 + AT_rich Low_complexity Low_complexity 1 23 0 585 254 127 0 chr1 89213473 89213638 -153450715 + MER5A DNA MER1_type 1 186 -3 293 408 7 7 chr1 89214335 89214482 -153449871 - L2 LINE L2 -1 3271 3125 527 254 119 30 chr1 89214536 89214738 -153449615 + MIR SINE MIR 28 245 -17 318 50 0 0 chr1 89216169 89216209 -153448144 + (CA)n Simple_repeat Simple_repeat 2 41 0 320 274 94 17 chr1 89218133 89218250 -153446103 + L2 LINE L2 3143 3268 -4 24 53 0 0 chr1 89218305 89218343 -153446010 + AT_rich Low_complexity Low_complexity 1 38 0 436 342 71 0 chr1 89218347 89218531 -153445822 - MIR SINE MIR -1 261 65 666 284 140 34 chr1 89219990 89220311 -153444042 + L2 LINE L2 2549 2903 -411 204 237 0 0 chr1 89220315 89220353 -153444000 + T-rich Low_complexity Low_complexity 2 39 0 1524 120 89 41 chr1 89220695 89220847 -153443506 - AluSx SINE Alu -6 306 163 2026 133 0 3 chr1 89220847 89221147 -153443206 - AluSx SINE Alu -13 299 1 1524 120 89 41 chr1 89221147 89221286 -153443067 - AluSx SINE Alu -149 163 1 197 65 32 0 chr1 89222351 89222382 -153441971 + (CAT)n Simple_repeat Simple_repeat 2 33 0 223 345 96 18 chr1 89222557 89222777 -153441576 + L3 LINE CR1 806 1042 -535 582 86 0 0 chr1 89222826 89222907 -153441446 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 299 359 49 53 chr1 89222996 89223261 -153441092 + L3 LINE CR1 1311 1574 -3 396 312 61 111 chr1 89224090 89224433 -153439920 + L2 LINE L2 2946 3271 -1 2218 106 3 6 chr1 89226146 89226458 -153437895 - AluSx SINE Alu -1 311 1 24 32 0 0 chr1 89226876 89226907 -153437446 + AT_rich Low_complexity Low_complexity 1 31 0 184 354 0 37 chr1 89227983 89228065 -153436288 + MIR SINE MIR 16 94 -114 267 272 0 25 chr1 89228101 89228182 -153436171 + L2 LINE L2 3223 3301 -12 277 261 217 0 chr1 89228450 89228565 -153435788 + MIR SINE MIR 97 236 -26 920 127 0 0 chr1 89228568 89228702 -153435651 + MER41A LTR ERV1 1 134 -420 1041 73 0 7 chr1 89228702 89228839 -153435514 + AluYb8 SINE Alu 7 142 -176 3336 99 0 22 chr1 89228839 89229303 -153435050 + LTR10C LTR ERV1 138 591 0 1466 94 20 0 chr1 89229303 89229504 -153434849 + MER4E LTR ERV1 562 766 0 3298 258 88 25 chr1 89229567 89230592 -153433761 + L1MB7 LINE L1 28 1116 -5426 2104 264 33 28 chr1 89230605 89231505 -153432848 + L1MB7 LINE L1 1210 2109 -4537 4420 223 31 40 chr1 89231647 89231959 -153432394 + L1MB7 LINE L1 4447 4760 -1922 1852 125 44 7 chr1 89231959 89232256 -153432097 + AluSg SINE Alu 1 308 -2 4420 223 31 40 chr1 89232256 89234128 -153430225 + L1MB7 LINE L1 4760 6605 -77 350 364 44 53 chr1 89234451 89234811 -153429542 - L2 LINE L2 -480 2834 2478 370 305 10 35 chr1 89235890 89236090 -153428263 - L1ME LINE L1 -364 5757 5563 30 0 0 0 chr1 89236510 89236540 -153427813 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr1 89236697 89236736 -153427617 + AT_rich Low_complexity Low_complexity 1 39 0 640 323 39 32 chr1 89238147 89238485 -153425868 + LTR16C LTR ERVL 146 485 -6 22 0 0 0 chr1 89238604 89238626 -153425727 + AT_rich Low_complexity Low_complexity 1 22 0 2957 248 59 11 chr1 89238724 89239706 -153424647 - L1M4 LINE L1 -2907 3239 2211 902 260 121 23 chr1 89240458 89240854 -153423499 - MER110A LTR ERV1 0 468 34 328 323 8 77 chr1 89240914 89241216 -153423137 + MLT1J2 LTR MaLR 15 340 -106 2403 199 13 7 chr1 89241323 89241776 -153422577 + MSTB2 LTR MaLR 1 456 -1 180 0 0 0 chr1 89241929 89241949 -153422404 + (TTG)n Simple_repeat Simple_repeat 2 21 0 250 291 13 25 chr1 89242203 89242282 -153422071 + L2 LINE L2 3180 3257 -56 3872 148 17 31 chr1 89242283 89242992 -153421361 - LTR34 LTR ERV1 0 699 1 314 259 129 0 chr1 89243257 89243373 -153420980 - MER94 DNA DNA -3 131 1 627 348 52 11 chr1 89244456 89244743 -153419610 + MLT1H LTR MaLR 56 354 -195 298 60 20 20 chr1 89244878 89244928 -153419425 + (TG)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr1 89245275 89245296 -153419057 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 89246105 89246126 -153418227 + AT_rich Low_complexity Low_complexity 1 21 0 270 299 280 0 chr1 89248793 89248950 -153415403 - MIR SINE MIR 0 262 62 299 265 44 0 chr1 89249355 89249423 -153414930 - L2 LINE L2 -66 3206 3136 331 322 44 44 chr1 89249575 89249758 -153414595 + MIR SINE MIR 2 184 -78 235 301 27 0 chr1 89249886 89249959 -153414394 - L2 LINE L2 -9 3304 3230 228 35 0 0 chr1 89250121 89250150 -153414203 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 723 310 94 24 chr1 89251862 89252191 -153412162 - L2 LINE L2 0 3313 2962 213 333 74 45 chr1 89252261 89252504 -153411849 + L2 LINE L2 2657 2906 -408 446 296 80 53 chr1 89253319 89253457 -153410896 + MIR SINE MIR 31 179 -83 1756 181 33 19 chr1 89253457 89253817 -153410536 - MLT1A1 LTR MaLR 0 365 1 446 296 80 53 chr1 89253817 89253904 -153410449 + MIR SINE MIR 179 262 0 235 307 40 0 chr1 89254118 89254193 -153410160 + MIR SINE MIR 181 258 -4 1507 226 85 59 chr1 89254193 89254685 -153409668 + MLT1D LTR MaLR 1 505 0 27 62 0 0 chr1 89254775 89254823 -153409530 + AT_rich Low_complexity Low_complexity 1 48 0 220 268 0 18 chr1 89255308 89255364 -153408989 + CT-rich Low_complexity Low_complexity 1 55 0 1508 142 22 0 chr1 89255778 89256010 -153408343 - MLT2A2 LTR ERVL -216 237 1 11639 101 8 6 chr1 89256010 89257613 -153406740 - HERVL-A2 LTR ERVL 0 5654 4050 572 89 0 0 chr1 89257613 89257692 -153406661 - MLT2A2 LTR ERVL -374 79 1 188 32 97 0 chr1 89258343 89258374 -153405979 + T-rich Low_complexity Low_complexity 2 35 0 34 72 0 0 chr1 89258608 89258677 -153405676 + AT_rich Low_complexity Low_complexity 1 69 0 368 295 116 8 chr1 89258919 89259048 -153405305 + MIR SINE MIR 34 176 -86 23 0 0 0 chr1 89259056 89259079 -153405274 + AT_rich Low_complexity Low_complexity 1 23 0 201 328 0 0 chr1 89259090 89259151 -153405202 - MIR SINE MIR 0 262 202 213 203 27 14 chr1 89259261 89259335 -153405018 + (TA)n Simple_repeat Simple_repeat 1 75 0 191 36 36 0 chr1 89259352 89259380 -153404973 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 1132 193 20 0 chr1 89259956 89260158 -153404195 + MER2 DNA MER2_type 1 206 -139 902 196 79 112 chr1 89260251 89260643 -153403710 + MER57A LTR ERV1 25 403 0 384 309 96 4 chr1 89263053 89263283 -153401070 + MIR SINE MIR 8 258 -4 467 295 76 32 chr1 89263291 89263542 -153400811 + MIR SINE MIR 1 262 0 2357 84 7 3 chr1 89263709 89264018 -153400335 - AluY SINE Alu -1 310 1 5036 95 34 102 chr1 89264807 89265693 -153398660 + LTR12 LTR ERV1 1 826 0 320 268 42 71 chr1 89266373 89266612 -153397741 + L1MEd LINE L1 984 1215 -4904 2067 116 17 40 chr1 89266623 89266976 -153397377 + L1MA1 LINE L1 5954 6298 -4 23 0 0 0 chr1 89266980 89267003 -153397350 + AT_rich Low_complexity Low_complexity 1 23 0 1662 140 104 4 chr1 89267885 89268164 -153396189 - AluSx SINE Alu -5 307 1 1366 265 83 43 chr1 89268298 89268897 -153395456 - MLT1E2 LTR MaLR 0 626 4 564 252 213 116 chr1 89268900 89269488 -153394865 - MLT1E2-int LTR MaLR 0 1371 727 1987 139 3 3 chr1 89269725 89270020 -153394333 + AluSq SINE Alu 1 295 -18 200 135 0 19 chr1 89272316 89272368 -153391985 + (TAA)n Simple_repeat Simple_repeat 3 53 0 401 286 95 14 chr1 89272375 89272522 -153391831 - MLT1I LTR MaLR -27 382 224 1007 271 94 26 chr1 89272571 89273432 -153390921 - L1ME LINE L1 -468 5702 4787 6067 55 13 14 chr1 89273489 89274270 -153390083 - LTR17 LTR ERV1 0 780 1 430 147 0 0 chr1 89274297 89274365 -153389988 - MLT1D LTR MaLR 0 505 438 670 358 44 22 chr1 89274367 89274778 -153389575 + L1M3c LINE L1 1 420 -5721 299 148 19 0 chr1 89274898 89274952 -153389401 + L1MB1 LINE L1 3802 3856 -2290 5649 147 45 37 chr1 89274960 89276009 -153388344 + L1PB1 LINE L1 2 1058 -5805 14076 201 14 16 chr1 89276014 89278500 -153385853 + L1PB1 LINE L1 1627 4162 -2705 1844 162 13 0 chr1 89278500 89278803 -153385550 + AluSx SINE Alu 6 312 0 14076 201 14 16 chr1 89278803 89281035 -153383318 + L1PB1 LINE L1 4162 6398 -469 884 183 42 0 chr1 89281150 89281341 -153383012 - L1 LINE L1 -1253 4893 4695 225 0 0 0 chr1 89281348 89281373 -153382980 + (CA)n Simple_repeat Simple_repeat 1 25 0 1852 149 72 0 chr1 89281373 89281708 -153382645 + L1PB1 LINE L1 6509 6867 0 5085 202 70 16 chr1 89281749 89283152 -153381201 + L1MB1 LINE L1 3835 5161 -1007 2113 107 0 21 chr1 89283152 89283471 -153380882 + AluSq SINE Alu 1 313 0 5085 202 70 16 chr1 89283471 89283505 -153380848 + L1MB1 LINE L1 5161 5192 -976 2312 184 21 5 chr1 89283505 89283923 -153380430 - MSTB LTR MaLR -1 425 1 5085 202 70 16 chr1 89283923 89284671 -153379682 + L1MB1 LINE L1 5192 6146 -22 2353 211 103 23 chr1 89284676 89285153 -153379200 + MLT2B3 LTR ERVL 1 523 -31 410 101 14 0 chr1 89285153 89285222 -153379131 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 2353 211 103 23 chr1 89285222 89285257 -153379096 + MLT2B3 LTR ERVL 523 554 0 1559 243 119 10 chr1 89285285 89285689 -153378664 - MLT1D LTR MaLR -57 448 1 876 234 50 108 chr1 89285737 89285832 -153378521 - MLT1D-int LTR MaLR -46 1325 1226 3600 125 27 33 chr1 89285832 89286471 -153377882 - LTR24C LTR ERV1 0 635 1 876 234 50 108 chr1 89286471 89286755 -153377598 - MLT1D-int LTR MaLR -145 1226 968 21 71 0 0 chr1 89286907 89286949 -153377404 + AT_rich Low_complexity Low_complexity 1 42 0 955 246 68 73 chr1 89287066 89287464 -153376889 + MSTD LTR MaLR 1 396 0 6281 251 58 16 chr1 89287466 89289130 -153375223 + MSTD-int LTR MaLR 2 1735 0 1247 260 22 42 chr1 89289130 89289534 -153374819 + MSTD LTR MaLR 1 396 0 961 299 57 49 chr1 89289689 89290025 -153374328 - L1M4 LINE L1 -2105 4041 3709 2392 75 7 0 chr1 89290025 89290333 -153374020 - AluY SINE Alu -1 310 1 961 299 57 49 chr1 89290333 89290887 -153373466 - L1M4 LINE L1 -2437 3709 3144 6629 62 37 0 chr1 89291203 89292389 -153371964 - L1PA8 LINE L1 -11 6161 4960 2444 153 34 10 chr1 89292951 89293369 -153370984 - MSTA LTR MaLR 0 428 1 2001 125 26 3 chr1 89293648 89293951 -153370402 + AluSx SINE Alu 1 310 -2 721 127 15 8 chr1 89293954 89294088 -153370265 + GA-rich Low_complexity Low_complexity 2 136 0 587 370 35 26 chr1 89294111 89294457 -153369896 - L2 LINE L2 -879 2435 2087 5149 257 23 36 chr1 89295181 89297661 -153366692 - L1PB4 LINE L1 -2546 4303 1878 7489 195 30 9 chr1 89297661 89300157 -153364196 + L1PB4 LINE L1 4312 6856 -3 192 276 66 99 chr1 89302513 89302665 -153361688 + MER5A DNA MER1_type 43 189 0 22 35 0 0 chr1 89302931 89302960 -153361393 + AT_rich Low_complexity Low_complexity 1 29 0 1959 147 51 25 chr1 89303232 89303587 -153360766 - THE1B LTR MaLR 0 364 1 231 36 0 0 chr1 89304880 89304908 -153359445 + (T)n Simple_repeat Simple_repeat 1 28 0 372 177 50 71 chr1 89304910 89305051 -153359302 + L1MB7 LINE L1 6031 6168 -16 479 0 0 0 chr1 89305484 89305545 -153358808 - L1PA2 LINE L1 0 6155 6095 695 179 8 0 chr1 89306660 89306777 -153357576 - FLAM_C SINE Alu -15 118 1 7506 191 30 12 chr1 89306959 89309569 -153354784 - L1PA16 LINE L1 -3 6163 3512 439 298 79 72 chr1 89309711 89310273 -153354080 + L1ME LINE L1 5264 5824 -297 1346 284 47 19 chr1 89310307 89310730 -153353623 - LTR40a LTR ERVL -8 511 77 1787 172 21 58 chr1 89311105 89311591 -153352762 - MER39 LTR ERV1 -193 514 104 317 151 315 0 chr1 89311587 89311660 -153352693 - MER21A LTR ERV1 -766 165 70 * 366 127 0 0 chr1 89311768 89311823 -153352530 - MER21A LTR ERV1 -860 71 17 2035 231 52 9 chr1 89312274 89312719 -153351634 + MLT1D LTR MaLR 1 464 -41 521 343 45 11 chr1 89313118 89313383 -153350970 - MLT1L LTR MaLR 0 615 342 3930 121 70 36 chr1 89313728 89314486 -153349867 + LTR1 LTR ERV1 2 785 0 339 25 0 0 chr1 89314524 89314564 -153349789 + (TG)n Simple_repeat Simple_repeat 1 40 0 787 129 109 7 chr1 89314796 89314943 -153349410 + MER61A LTR ERV1 1 162 -181 898 136 0 39 chr1 89315206 89315361 -153348992 + MER61A LTR ERV1 195 343 0 2450 180 39 26 chr1 89315361 89315979 -153348374 + MER61A-int LTR ERV1 1 707 -4510 24300 99 58 19 chr1 89316009 89319762 -153344591 + MER61A-int LTR ERV1 1320 5217 0 1494 166 60 27 chr1 89319762 89320094 -153344259 + MER61A LTR ERV1 1 343 0 1866 122 15 0 chr1 89320337 89320627 -153343726 - AluSg SINE Alu 0 309 16 938 164 0 22 chr1 89321397 89321580 -153342773 + L1MB1 LINE L1 5990 6168 0 340 302 17 43 chr1 89322100 89322216 -153342137 - L3 LINE CR1 -6 1571 1459 25 31 0 0 chr1 89323204 89323236 -153341117 + AT_rich Low_complexity Low_complexity 1 32 0 378 0 0 0 chr1 89323281 89323323 -153341030 + (TG)n Simple_repeat Simple_repeat 2 43 0 296 237 92 69 chr1 89323707 89323838 -153340515 + MIR SINE MIR 59 192 -70 1688 174 7 10 chr1 89325577 89325876 -153338477 - AluJb SINE Alu -4 308 11 21 36 0 0 chr1 89326629 89326657 -153337696 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr1 89328995 89329038 -153335315 + AT_rich Low_complexity Low_complexity 1 43 0 2632 104 0 0 chr1 89330402 89330757 -153333596 + THE1A LTR MaLR 1 355 0 430 195 0 0 chr1 89332560 89332642 -153331711 - L1M4 LINE L1 -3218 2928 2847 * 1677 205 29 142 chr1 89332640 89333291 -153331062 + L1MDa LINE L1 33 598 -5942 2626 20 0 0 chr1 89335037 89335332 -153329021 - AluYa5 SINE Alu -14 297 3 2101 73 31 3 chr1 89335358 89335644 -153328709 - AluY SINE Alu -17 294 1 2623 102 3 3 chr1 89335768 89336132 -153328221 - THE1B LTR MaLR 0 364 1 254 232 61 12 chr1 89337012 89337094 -153327259 + Charlie8 DNA MER1_type 71 156 -2261 302 298 145 15 chr1 89337439 89337570 -153326783 - MIR SINE MIR -114 148 1 23 33 0 0 chr1 89339931 89339961 -153324392 + AT_rich Low_complexity Low_complexity 1 30 0 256 317 244 11 chr1 89340255 89340435 -153323918 + MIR SINE MIR 14 235 -27 496 261 26 0 chr1 89340874 89340989 -153323364 + MLT1J LTR MaLR 3 120 -391 1869 345 38 28 chr1 89340990 89342150 -153322203 + ERVL LTR ERVL 4252 5423 -341 414 317 28 0 chr1 89345029 89345171 -153319182 - MIR3 SINE MIR -3 205 60 1697 284 100 4 chr1 89345432 89345960 -153318393 + MER119 DNA MER1_type 1 579 -4 337 257 96 44 chr1 89346198 89346334 -153318019 + MIR SINE MIR 118 260 -2 347 279 58 43 chr1 89347900 89348108 -153316245 + L1ME LINE L1 5518 5728 -393 218 277 133 0 chr1 89348161 89348244 -153316109 - MIR SINE MIR -15 247 154 1173 238 37 52 chr1 89348244 89348286 -153316067 - MLT2D LTR ERVL 0 414 373 282 116 0 0 chr1 89348286 89348329 -153316024 + (CA)n Simple_repeat Simple_repeat 2 44 0 1173 238 37 52 chr1 89348329 89348614 -153315739 - MLT2D LTR ERVL -41 373 92 250 378 30 15 chr1 89348654 89348789 -153315564 - MIR SINE MIR -108 154 18 21 0 0 0 chr1 89348847 89348868 -153315485 + AT_rich Low_complexity Low_complexity 1 21 0 2397 48 0 0 chr1 89353794 89354088 -153310265 - AluY SINE Alu -17 294 1 257 200 33 0 chr1 89355147 89355207 -153309146 + T-rich Low_complexity Low_complexity 4 65 0 217 339 131 8 chr1 89355425 89355555 -153308798 - L2 LINE L2 0 3272 3127 1261 297 119 33 chr1 89359495 89360628 -153303725 + L2 LINE L2 2078 3313 0 697 234 44 29 chr1 89361890 89362095 -153302258 + MER3 DNA MER1_type 2 209 0 1525 210 30 78 chr1 89363813 89364209 -153300144 + MLT1B LTR MaLR 1 377 -13 283 335 165 14 chr1 89364378 89364596 -153299757 - MIR SINE MIR 0 262 12 329 244 0 32 chr1 89365215 89365331 -153299022 + MLT1J LTR MaLR 68 174 -200 1579 127 200 43 chr1 89366769 89367139 -153297214 - MSTA LTR MaLR 0 428 1 9556 128 16 42 chr1 89367145 89368236 -153296117 - MSTA-int LTR MaLR -7 1573 536 225 0 0 0 chr1 89368236 89368261 -153296092 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9556 128 16 42 chr1 89368261 89368782 -153295571 - MSTA-int LTR MaLR -1044 536 3 1560 197 55 17 chr1 89368784 89369145 -153295208 - THE1C LTR MaLR 0 375 1 261 283 9 57 chr1 89369467 89369573 -153294780 - MIR SINE MIR -3 259 159 1639 230 139 7 chr1 89369573 89370140 -153294213 - MLT1E2 LTR MaLR 0 626 1 292 161 34 0 chr1 89370140 89370198 -153294155 - MIR SINE MIR -99 163 104 273 159 0 0 chr1 89371302 89371365 -153292988 + T-rich Low_complexity Low_complexity 1 63 0 885 146 0 0 chr1 89371579 89371702 -153292651 - FLAM_C SINE Alu -10 123 1 27 29 0 0 chr1 89373033 89373067 -153291286 + AT_rich Low_complexity Low_complexity 1 34 0 1462 241 110 54 chr1 89375026 89375527 -153288826 + MLT1F1 LTR MaLR 14 567 0 794 312 31 35 chr1 89375528 89375957 -153288396 + MLT1F1-int LTR MaLR 2 554 -817 2200 93 13 3 chr1 89375957 89376257 -153288096 + AluY SINE Alu 1 303 -8 794 312 31 35 chr1 89376257 89376310 -153288043 + MLT1F1-int LTR MaLR 554 606 -765 4209 74 19 26 chr1 89376534 89377155 -153287198 - L1PA8 LINE L1 -6 6166 5550 499 277 78 128 chr1 89377168 89377858 -153286495 + MLT1F1-int LTR MaLR 692 1347 -24 1505 279 79 28 chr1 89377888 89378418 -153285935 + MLT1F1 LTR MaLR 8 567 0 652 384 61 26 chr1 89378418 89378960 -153285393 - L2 LINE L2 -268 3045 2482 21 71 0 0 chr1 89380693 89380735 -153283618 + AT_rich Low_complexity Low_complexity 1 42 0 233 223 50 14 chr1 89381356 89381495 -153282858 + (TA)n Simple_repeat Simple_repeat 2 145 0 294 184 59 15 chr1 89381560 89381696 -153282657 + (TA)n Simple_repeat Simple_repeat 1 142 0 214 214 28 51 chr1 89381741 89381919 -153282434 + (TTATA)n Simple_repeat Simple_repeat 5 178 0 * 230 218 65 35 chr1 89381825 89381995 -153282358 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 36 77 0 0 chr1 89382671 89382749 -153281604 + AT_rich Low_complexity Low_complexity 1 78 0 219 213 0 0 chr1 89382954 89383034 -153281319 + (CTA)n Simple_repeat Simple_repeat 3 82 0 296 302 9 17 chr1 89383096 89383212 -153281141 - MER103 DNA DNA -2 164 50 11920 28 0 1 chr1 89383213 89385414 -153278939 + L1PA3 LINE L1 3944 6155 0 24 53 0 0 chr1 89385497 89385535 -153278818 + AT_rich Low_complexity Low_complexity 1 38 0 187 308 0 0 chr1 89386132 89386184 -153278169 - MIR SINE MIR 0 262 211 23 0 0 0 chr1 89386319 89386342 -153278011 + AT_rich Low_complexity Low_complexity 1 23 0 184 383 28 21 chr1 89387096 89387237 -153277116 + MIR SINE MIR 46 187 -75 1258 232 40 63 chr1 89387996 89388393 -153275960 - MLT1B LTR MaLR -2 388 1 3619 271 88 30 chr1 89388705 89389716 -153274637 + L1ME1 LINE L1 35 986 -5410 1629 193 94 8 chr1 89389716 89390078 -153274275 + MSTD LTR MaLR 1 393 -3 3619 271 88 30 chr1 89390078 89390342 -153274011 + L1ME1 LINE L1 986 1233 -5163 399 56 0 0 chr1 89390342 89390396 -153273957 + (CA)n Simple_repeat Simple_repeat 2 55 0 3619 271 88 30 chr1 89390396 89390764 -153273589 + L1ME1 LINE L1 1233 1775 -4621 5967 242 77 32 chr1 89390766 89392408 -153271945 + L1ME1 LINE L1 2952 4519 -1716 204 67 0 0 chr1 89392408 89392438 -153271915 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5967 242 77 32 chr1 89392438 89393896 -153270457 + L1ME1 LINE L1 4519 6186 -49 334 241 26 26 chr1 89393832 89393948 -153270405 + L1MA10 LINE L1 6280 6395 -8 * 22 0 0 0 chr1 89396196 89396218 -153268135 + AT_rich Low_complexity Low_complexity 1 22 0 1018 248 68 66 chr1 89396285 89396680 -153267673 - MLT1E2 LTR MaLR -146 480 85 204 233 0 0 chr1 89396689 89396732 -153267621 + (TATG)n Simple_repeat Simple_repeat 1 43 0 564 257 139 21 chr1 89398708 89398895 -153265458 + HsTC2 DNA Tc2 1282 1666 -232 2084 125 0 6 chr1 89398963 89399274 -153265079 - AluSc SINE Alu 0 309 1 5890 130 30 3 chr1 89399318 89400256 -153264097 - L1MA5A LINE L1 -4 6935 5969 2088 122 0 28 chr1 89400256 89400577 -153263776 - AluSx SINE Alu 0 312 1 5890 130 30 3 chr1 89400577 89400609 -153263744 - L1MA5A LINE L1 -970 5969 5939 189 74 0 0 chr1 89400613 89400640 -153263713 + (TTTCC)n Simple_repeat Simple_repeat 4 30 0 * 260 172 17 0 chr1 89400635 89400693 -153263660 + CT-rich Low_complexity Low_complexity 2 60 0 10494 197 46 4 chr1 89400693 89403100 -153261253 - L1MA5A LINE L1 -841 5947 3440 7179 206 51 72 chr1 89403115 89405090 -153259263 - L1MA5A LINE L1 -4620 2169 1 24 47 0 47 chr1 89405155 89405219 -153259134 + AT_rich Low_complexity Low_complexity 1 61 0 296 387 103 26 chr1 89405909 89406250 -153258103 - L2 LINE L2 -9 3263 2897 376 344 67 37 chr1 89406748 89407178 -153257175 - ERVL LTR ERVL -389 5375 4933 1611 178 48 40 chr1 89407246 89407443 -153256910 - MLT1B LTR MaLR 0 390 187 333 0 0 0 chr1 89407443 89407480 -153256873 + (TG)n Simple_repeat Simple_repeat 1 37 0 1611 178 48 40 chr1 89407480 89407659 -153256694 - MLT1B LTR MaLR -203 187 11 452 305 90 15 chr1 89407687 89407887 -153256466 - ERVL LTR ERVL -937 4827 4613 * 869 292 75 68 chr1 89407879 89408202 -153256151 - ERVL LTR ERVL -1324 4440 4110 2770 13 0 0 chr1 89408202 89408513 -153255840 + AluYa5 SINE Alu 1 311 0 869 292 75 68 chr1 89408513 89408706 -153255647 - ERVL LTR ERVL -1654 4110 3920 1706 175 31 21 chr1 89408711 89408978 -153255375 - MLT1A1 LTR MaLR 0 365 93 932 192 154 90 chr1 89408978 89409321 -153255032 - MLT1A1 LTR MaLR 0 365 1 1706 175 31 21 chr1 89409321 89409378 -153254975 - MLT1A1 LTR MaLR -272 93 38 189 147 0 0 chr1 89409409 89409443 -153254910 + (TTCCC)n Simple_repeat Simple_repeat 4 37 0 707 342 61 35 chr1 89409598 89410385 -153253968 - ERVL LTR ERVL -2098 3387 2580 3097 194 20 20 chr1 89410398 89411010 -153253343 + L1MA3 LINE L1 20 631 -6934 * 9135 159 35 26 chr1 89411007 89412355 -153251998 + L1MA3 LINE L1 1481 2848 -4717 21806 29 0 0 chr1 89412355 89415771 -153248582 + L1PA3 LINE L1 2735 6152 -3 9135 159 35 26 chr1 89415771 89416156 -153248197 + L1MA3 LINE L1 2848 3228 -4337 1384 223 18 68 chr1 89416149 89416549 -153247804 - L1 LINE L1 -3366 2780 2401 * 1664 197 0 0 chr1 89416551 89416835 -153247518 - AluJb SINE Alu -28 284 1 221 226 48 48 chr1 89416835 89416897 -153247456 - L2 LINE L2 -960 2354 2293 513 202 0 0 chr1 89416913 89417017 -153247336 - L1 LINE L1 -3748 2398 2295 * 9950 164 58 40 chr1 89417011 89419082 -153245271 + L1MA3 LINE L1 4188 6357 -1367 2670 102 6 0 chr1 89419082 89419444 -153244909 - THE1B LTR MaLR 0 364 1 9950 164 58 40 chr1 89419444 89420837 -153243516 + L1MA3 LINE L1 6357 7723 -1 787 338 44 25 chr1 89420956 89421273 -153243080 - ERVL LTR ERVL -3242 2412 2090 416 377 69 20 chr1 89421335 89421783 -153242570 - ERVL LTR ERVL -3740 2024 1555 2185 69 11 0 chr1 89422745 89423078 -153241275 + AluY SINE Alu 2 337 0 936 285 147 11 chr1 89423409 89423756 -153240597 - LTR33 LTR ERVL -1 520 127 1730 286 130 7 chr1 89423772 89424503 -153239850 + L2 LINE L2 1282 2102 -1212 523 265 59 34 chr1 89424836 89425040 -153239313 - MER63A DNA MER1_type -1 209 1 280 339 81 0 chr1 89425096 89425220 -153239133 + L2 LINE L2 3180 3313 0 1915 266 69 57 chr1 89425876 89428019 -153236334 + L1ME3A LINE L1 4009 6170 0 331 221 230 9 chr1 89428591 89428704 -153235649 + Tigger5 DNA MER2_type 1 138 -2185 * 1175 197 0 0 chr1 89428701 89428914 -153235439 + Tigger5 DNA MER2_type 2104 2316 -7 476 239 28 35 chr1 89429352 89429494 -153234859 + L1ME1 LINE L1 309 449 -5974 1649 292 62 41 chr1 89429759 89431398 -153232955 + L1ME1 LINE L1 820 2705 -4417 1022 157 5 26 chr1 89431397 89431588 -153232765 + L1MA4 LINE L1 5341 5527 -777 * 774 180 0 7 chr1 89431583 89431722 -153232631 + L1MA4 LINE L1 5883 6020 -280 * 375 189 33 0 chr1 89431729 89431819 -153232534 + L1MB3 LINE L1 6090 6182 -1 27 62 0 0 chr1 89431834 89431882 -153232471 + AT_rich Low_complexity Low_complexity 1 48 0 1481 171 25 29 chr1 89431886 89432167 -153232186 + AluJo SINE Alu 3 282 -30 183 80 0 0 chr1 89432172 89432197 -153232156 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 5797 159 89 13 chr1 89432245 89432292 -153232061 - Tigger3b DNA MER2_type -1797 1231 1189 2580 113 0 0 chr1 89432292 89432656 -153231697 - THE1B LTR MaLR 0 364 1 5797 159 89 13 chr1 89432656 89433487 -153230866 - Tigger3b DNA MER2_type -1839 1189 243 576 0 0 0 chr1 89433487 89433551 -153230802 + (TATAG)n Simple_repeat Simple_repeat 4 67 0 5797 159 89 13 chr1 89433551 89433815 -153230538 - Tigger3b DNA MER2_type -2785 243 1 5065 251 71 38 chr1 89433858 89435113 -153229240 + L1ME1 LINE L1 3869 5081 -1880 2424 168 22 11 chr1 89435113 89435566 -153228787 - L1PB4 LINE L1 -1 6155 5698 5065 251 71 38 chr1 89435566 89437304 -153227049 + L1ME1 LINE L1 5081 6953 -8 21 0 0 0 chr1 89438086 89438107 -153226246 + AT_rich Low_complexity Low_complexity 1 21 0 489 266 22 14 chr1 89439146 89439285 -153225068 + MIR SINE MIR 13 152 -110 1379 191 84 88 chr1 89439424 89439888 -153224465 + MER31B LTR ERV1 1 538 -5 213 39 0 0 chr1 89441145 89441171 -153223182 + (CA)n Simple_repeat Simple_repeat 1 26 0 188 190 51 0 chr1 89442081 89442160 -153222193 + (TA)n Simple_repeat Simple_repeat 1 83 0 189 0 0 0 chr1 89442448 89442469 -153221884 + (CAG)n Simple_repeat Simple_repeat 1 21 0 751 341 68 45 chr1 89443335 89444294 -153220059 + L2 LINE L2 2291 3272 0 29 0 0 0 chr1 89444432 89444461 -153219892 + AT_rich Low_complexity Low_complexity 1 29 0 188 284 27 122 chr1 89445755 89445903 -153218450 + MER5A DNA MER1_type 56 189 0 273 277 85 43 chr1 89446280 89446421 -153217932 + L2 LINE L2 3165 3311 -2 248 338 113 29 chr1 89446759 89446963 -153217390 + MLT1I LTR MaLR 82 302 -107 454 246 49 0 chr1 89447707 89447829 -153216524 - MER94 DNA DNA -1 133 6 263 361 144 15 chr1 89448414 89448616 -153215737 + MIR SINE MIR 22 249 -13 375 78 0 0 chr1 89451044 89451095 -153213258 + (CA)n Simple_repeat Simple_repeat 2 52 0 479 310 194 5 chr1 89452072 89452288 -153212065 + MIR SINE MIR 2 258 -4 220 327 40 50 chr1 89452389 89452490 -153211863 + MER91A DNA MER1_type 52 151 -45 214 180 160 40 chr1 89452509 89452559 -153211794 + MER91A DNA MER1_type 122 177 -19 1580 247 19 32 chr1 89452973 89453439 -153210914 - LTR40b LTR ERVL 0 462 3 24 0 0 0 chr1 89453847 89453871 -153210482 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr1 89454169 89454198 -153210155 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 296 294 43 55 chr1 89454801 89454964 -153209389 - MER63A DNA MER1_type -9 201 41 687 269 27 30 chr1 89455392 89455689 -153208664 - L1ME LINE L1 -350 5771 5476 239 250 47 61 chr1 89456137 89456285 -153208068 - L1ME LINE L1 -2348 5460 5315 275 351 66 0 chr1 89456747 89456898 -153207455 - L3 LINE CR1 -622 955 795 371 163 124 144 chr1 89457028 89457181 -153207172 + MER5C DNA MER1_type 11 160 -164 222 300 0 0 chr1 89457259 89457319 -153207034 - L3 LINE CR1 -870 707 648 10844 255 35 28 chr1 89457330 89463083 -153201270 + L1PA15 LINE L1 2 5781 -1803 29818 112 19 23 chr1 89463098 89469196 -153195157 + L1PA7 LINE L1 326 6466 -3 3764 190 10 11 chr1 89469189 89470000 -153194353 + L1PA15 LINE L1 5836 6645 -939 * 4092 143 35 1 chr1 89470000 89470693 -153193660 + L1PA15 LINE L1 6883 7599 -4 186 319 181 37 chr1 89470718 89470906 -153193447 - L3 LINE CR1 -966 611 397 220 325 57 32 chr1 89472739 89472862 -153191491 + L2 LINE L2 2932 3057 -215 21 0 0 0 chr1 89473623 89473644 -153190709 + AT_rich Low_complexity Low_complexity 1 21 0 292 330 71 50 chr1 89473651 89473933 -153190420 - L2 LINE L2 -866 2448 2161 1931 142 0 7 chr1 89473966 89474247 -153190106 + AluSx SINE Alu 1 279 -33 339 24 0 0 chr1 89474247 89474288 -153190065 + L1PA6 LINE L1 6105 6145 -9 189 0 0 0 chr1 89475444 89475465 -153188888 + (T)n Simple_repeat Simple_repeat 1 21 0 673 221 104 25 chr1 89475701 89475941 -153188412 - L1MCc LINE L1 -4954 1469 1211 1461 168 81 37 chr1 89475978 89476299 -153188054 - MER44D DNA MER2_type -1 608 4 898 290 42 23 chr1 89476303 89476613 -153187740 - L1MCc LINE L1 -5293 1130 815 2206 223 42 24 chr1 89476614 89477003 -153187350 - MLT2B2 LTR ERVL -7 508 107 898 198 61 134 chr1 89477003 89477397 -153186956 - MLT1A1 LTR MaLR 0 365 1 2206 223 42 24 chr1 89477397 89477504 -153186849 - MLT2B2 LTR ERVL -408 107 3 387 284 6 82 chr1 89477512 89477695 -153186658 - L1MCc LINE L1 -5607 816 648 634 78 0 0 chr1 89477895 89477985 -153186368 - AluY SINE Alu -4 307 218 1155 291 52 9 chr1 89477985 89478404 -153185949 - L1MCc LINE L1 -5968 455 19 23 0 0 0 chr1 89478570 89478593 -153185760 + AT_rich Low_complexity Low_complexity 1 23 0 4237 163 7 8 chr1 89478883 89479594 -153184759 - MER50 LTR ERV1 -24 710 1 447 225 72 7 chr1 89480335 89480473 -153183880 - MLT1J2 LTR MaLR -282 168 22 391 260 33 20 chr1 89480863 89481013 -153183340 - L1ME LINE L1 -451 5670 5519 28 0 0 0 chr1 89483301 89483329 -153181024 + AT_rich Low_complexity Low_complexity 1 28 0 349 299 42 60 chr1 89483813 89483980 -153180373 - L1MC4 LINE L1 -1339 6703 6540 32 0 0 0 chr1 89484021 89484053 -153180300 + AT_rich Low_complexity Low_complexity 1 32 0 313 200 53 0 chr1 89484148 89484223 -153180130 + MADE1 DNA Mariner 1 79 -1 2136 123 0 0 chr1 89484621 89484913 -153179440 + AluSg SINE Alu 3 294 -16 26 30 0 0 chr1 89485023 89485056 -153179297 + AT_rich Low_complexity Low_complexity 1 33 0 2271 237 44 22 chr1 89485191 89485777 -153178576 + MER90 LTR ERV1 1 599 -15 250 247 43 32 chr1 89486006 89486099 -153178254 - MIR SINE MIR -9 253 160 1164 270 119 22 chr1 89486271 89486982 -153177371 - L2 LINE L2 -1 3312 2520 196 264 163 70 chr1 89486967 89487096 -153177257 - MIR SINE MIR -121 141 1 * 1364 325 123 35 chr1 89488335 89489463 -153174890 + L2 LINE L2 1747 2973 -341 27 49 0 0 chr1 89490557 89490598 -153173755 + AT_rich Low_complexity Low_complexity 1 41 0 2477 58 0 0 chr1 89490769 89491061 -153173292 + AluY SINE Alu 1 292 -19 636 236 48 30 chr1 89491257 89491422 -153172931 - MIR SINE MIR -21 241 74 474 33 0 0 chr1 89491560 89491620 -153172733 + (CA)n Simple_repeat Simple_repeat 2 61 0 420 276 88 47 chr1 89491666 89491858 -153172495 - MIR SINE MIR -10 252 53 * 774 325 117 26 chr1 89491845 89492417 -153171936 - L2 LINE L2 -1086 2228 1605 1383 251 102 49 chr1 89492458 89492948 -153171405 + MLT2B1 LTR ERVL 5 520 0 345 292 241 7 chr1 89495347 89495484 -153168869 + L2 LINE L2 2577 2745 -569 2087 107 0 4 chr1 89495488 89495769 -153168584 + AluSg SINE Alu 3 282 -28 186 43 0 0 chr1 89495773 89495796 -153168557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 237 338 55 107 chr1 89495901 89496173 -153168180 + L2 LINE L2 3014 3271 -1 227 114 23 0 chr1 89497097 89497141 -153167212 + (TG)n Simple_repeat Simple_repeat 2 46 0 29 47 0 0 chr1 89497311 89497354 -153166999 + AT_rich Low_complexity Low_complexity 1 43 0 445 129 82 24 chr1 89499472 89499557 -153164796 + L2 LINE L2 3183 3272 0 21 0 0 0 chr1 89499962 89499983 -153164370 + AT_rich Low_complexity Low_complexity 1 21 0 254 186 0 0 chr1 89500434 89500477 -153163876 + MIR SINE MIR 109 151 -111 364 362 7 7 chr1 89501203 89501352 -153163001 + MIR SINE MIR 3 151 -111 2356 50 17 10 chr1 89503417 89503717 -153160636 + AluY SINE Alu 1 302 -9 229 363 19 51 chr1 89504210 89504367 -153159986 - MIR SINE MIR -92 170 19 25 65 0 0 chr1 89505637 89505683 -153158670 + AT_rich Low_complexity Low_complexity 1 46 0 294 226 83 0 chr1 89505709 89505793 -153158560 - MIR SINE MIR -73 189 99 1101 116 97 10 chr1 89505891 89506098 -153158255 - L1MA6 LINE L1 -3 6297 6073 341 117 17 0 chr1 89506576 89506636 -153157717 + (TA)n Simple_repeat Simple_repeat 2 62 0 326 319 72 51 chr1 89506914 89507190 -153157163 + L1MC4a LINE L1 2154 2435 -3711 1403 189 65 82 chr1 89507564 89508025 -153156328 + MLT2A2 LTR ERVL 1 453 0 234 0 0 0 chr1 89508158 89508184 -153156169 + (A)n Simple_repeat Simple_repeat 1 26 0 1765 182 80 44 chr1 89508972 89509336 -153155017 + MSTB1 LTR MaLR 16 396 -36 1921 164 0 0 chr1 89509336 89509628 -153154725 - AluSx SINE Alu -20 292 1 1765 182 80 44 chr1 89509628 89509653 -153154700 + MSTB1 LTR MaLR 396 419 -13 23 0 0 0 chr1 89510197 89510220 -153154133 + AT_rich Low_complexity Low_complexity 1 23 0 489 294 35 19 chr1 89510344 89510657 -153153696 + L1MC4a LINE L1 2852 3169 -2977 263 261 65 85 chr1 89510897 89511050 -153153303 + L1MC4a LINE L1 3692 3841 -2305 35 0 0 0 chr1 89511099 89511134 -153153219 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr1 89511178 89511204 -153153149 + (CA)n Simple_repeat Simple_repeat 1 26 0 481 306 42 21 chr1 89512227 89512560 -153151793 + L1MC4a LINE L1 5617 5959 -162 264 30 0 0 chr1 89512560 89512593 -153151760 + (TG)n Simple_repeat Simple_repeat 2 34 0 331 310 10 0 chr1 89513600 89513700 -153150653 - MER117 DNA MER1_type -41 156 56 1419 221 25 65 chr1 89514781 89515260 -153149093 - LTR37B LTR ERV1 0 468 9 23 0 0 0 chr1 89515666 89515689 -153148664 + AT_rich Low_complexity Low_complexity 1 23 0 222 236 69 42 chr1 89516384 89516456 -153147897 - MIR SINE MIR 0 262 189 270 331 110 16 chr1 89518425 89518552 -153145801 - L2 LINE L2 -5 3308 3170 366 347 6 36 chr1 89518747 89518914 -153145439 + LTR16A LTR ERVL 190 351 -99 341 306 10 97 chr1 89519898 89520101 -153144252 - MIR SINE MIR -56 206 18 2100 122 54 23 chr1 89520800 89521153 -153143200 + THE1B LTR MaLR 1 364 0 311 343 54 50 chr1 89521396 89521635 -153142718 - L2 LINE L2 -190 3082 2843 32 43 0 0 chr1 89522326 89522372 -153141981 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr1 89522883 89522907 -153141446 + AT_rich Low_complexity Low_complexity 1 24 0 272 373 64 10 chr1 89523059 89523263 -153141090 + L2 LINE L2 2837 3051 -221 26 0 0 0 chr1 89524029 89524055 -153140298 + AT_rich Low_complexity Low_complexity 1 26 0 5187 80 12 26 chr1 89524079 89524808 -153139545 - L1PA10 LINE L1 -17 6151 5433 1098 114 26 5 chr1 89524810 89525060 -153139293 + L1PA10 LINE L1 5189 5450 -724 40 21 0 0 chr1 89526121 89526168 -153138185 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr1 89526205 89526227 -153138126 + AT_rich Low_complexity Low_complexity 1 22 0 1126 183 33 116 chr1 89526797 89527195 -153137158 - MLT1A1 LTR MaLR 0 365 1 5024 237 70 38 chr1 89527199 89528556 -153135797 - MLT1A1-int LTR MaLR -11 1724 325 665 277 33 5 chr1 89528604 89528788 -153135565 - MER5A DNA MER1_type 0 189 1 181 0 69 0 chr1 89529195 89529224 -153135129 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 232 374 0 54 chr1 89529375 89529522 -153134831 + MIR3 SINE MIR 20 158 -50 193 394 92 14 chr1 89529544 89529686 -153134667 - MER5B DNA MER1_type -25 153 1 996 298 37 37 chr1 89530047 89530450 -153133903 - LTR16B LTR ERVL 0 464 62 319 301 53 0 chr1 89530945 89531058 -153133295 - MIR SINE MIR -56 206 88 304 333 70 26 chr1 89531838 89531994 -153132359 - MIR3 SINE MIR -41 167 5 417 375 110 38 chr1 89532388 89533136 -153131217 + L2 LINE L2 2452 3269 -3 978 288 79 45 chr1 89533614 89534781 -153129572 + L1ME LINE L1 141 1360 -4855 2136 112 3 3 chr1 89534781 89535085 -153129268 + AluY SINE Alu 1 304 -7 978 288 79 45 chr1 89535085 89535234 -153129119 + L1ME LINE L1 1360 1503 -4712 521 242 83 77 chr1 89535280 89535938 -153128415 + L1ME LINE L1 1925 2555 -3660 3472 260 88 45 chr1 89535995 89537447 -153126906 + L1M4 LINE L1 3209 4598 -1548 1910 234 78 37 chr1 89537447 89538046 -153126307 + MLT1E3 LTR MaLR 1 624 0 3472 260 88 45 chr1 89538046 89538446 -153125907 + L1M4 LINE L1 4598 5156 -990 1491 41 0 26 chr1 89538446 89538641 -153125712 + L1PA5 LINE L1 5963 6152 -2 3472 260 88 45 chr1 89538641 89538802 -153125551 + L1M4 LINE L1 5156 5309 -837 12229 168 35 23 chr1 89538828 89541192 -153123161 + L1M4c LINE L1 12 2414 -3968 2063 131 0 22 chr1 89541192 89541504 -153122849 + AluSx SINE Alu 1 305 -7 12229 168 35 23 chr1 89541504 89541669 -153122684 + L1M4c LINE L1 2414 2576 -3806 13615 16 1 0 chr1 89541770 89544126 -153120227 + L1HS LINE L1 3798 6155 0 25 0 0 0 chr1 89544126 89544151 -153120202 + AT_rich Low_complexity Low_complexity 1 25 0 229 150 150 0 chr1 89544151 89544211 -153120142 + L1ME LINE L1 5815 5883 -238 342 0 0 0 chr1 89544234 89544272 -153120081 + (A)n Simple_repeat Simple_repeat 1 38 0 648 229 34 23 chr1 89544272 89544447 -153119906 + MSTD LTR MaLR 69 245 -151 * 767 190 5 77 chr1 89544429 89544624 -153119729 + MSTD LTR MaLR 204 384 -12 2322 260 82 73 chr1 89544624 89547475 -153116878 - L1M4c LINE L1 -3180 3777 798 297 314 75 31 chr1 89547621 89547847 -153116506 - L1M4c LINE L1 -6613 246 11 547 343 64 0 chr1 89548208 89548427 -153115926 + MIR SINE MIR 20 252 -10 2089 167 47 28 chr1 89548847 89549272 -153115081 + Tigger2a DNA MER2_type 2 434 0 464 339 36 6 chr1 89550847 89551015 -153113338 + MIR SINE MIR 2 174 -88 26 0 0 0 chr1 89551040 89551066 -153113287 + AT_rich Low_complexity Low_complexity 1 26 0 2138 293 64 22 chr1 89551717 89553371 -153110982 - L1M2 LINE L1 -4177 1858 3 2160 87 0 14 chr1 89554119 89554459 -153109894 - AluY SINE Alu 0 336 1 273 288 0 0 chr1 89554541 89554607 -153109746 - L2 LINE L2 -3 3269 3204 207 0 0 0 chr1 89554863 89554886 -153109467 + (T)n Simple_repeat Simple_repeat 1 23 0 439 256 107 30 chr1 89555422 89555590 -153108763 - MER5A DNA MER1_type 0 189 9 518 355 77 39 chr1 89556252 89556771 -153107582 - L2 LINE L2 -1003 2311 1773 2044 152 10 68 chr1 89557788 89558202 -153106151 - MLT1B LTR MaLR 0 390 1 2001 258 98 9 chr1 89558204 89558736 -153105617 - MLT1E LTR MaLR -4 589 11 603 302 156 37 chr1 89559104 89559735 -153104618 - L2 LINE L2 -6 3307 2590 268 243 68 0 chr1 89559779 89559853 -153104500 + MER58 DNA MER1_type 44 122 -93 312 308 28 28 chr1 89559866 89559973 -153104380 - L2 LINE L2 -864 2450 2344 588 292 95 62 chr1 89560020 89560517 -153103836 + LTR67 LTR ERVL 43 555 -2 1678 183 3 3 chr1 89560684 89561001 -153103352 + L1MB3 LINE L1 5858 6174 -9 1335 251 40 3 chr1 89561010 89561381 -153102972 + L1ME3 LINE L1 5318 5702 -462 319 194 135 139 chr1 89561376 89561613 -153102740 + L1ME3 LINE L1 5916 6151 -11 * 237 108 0 0 chr1 89561615 89561652 -153102701 + (CAT)n Simple_repeat Simple_repeat 2 38 0 259 229 36 12 chr1 89561706 89561789 -153102564 + L1MC5 LINE L1 7832 7916 -45 320 358 123 11 chr1 89561917 89562104 -153102249 - MIR SINE MIR -50 212 5 21 0 0 0 chr1 89562196 89562217 -153102136 + AT_rich Low_complexity Low_complexity 1 21 0 245 29 0 29 chr1 89562635 89562670 -153101683 + (TA)n Simple_repeat Simple_repeat 1 34 0 243 0 0 0 chr1 89562669 89562696 -153101657 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 342 237 72 22 chr1 89562713 89562852 -153101501 + THE1C LTR MaLR 2 147 -228 1558 154 61 13 chr1 89562956 89563267 -153101086 + THE1C LTR MaLR 50 375 0 1712 213 30 3 chr1 89563306 89563644 -153100709 - MLT2C1 LTR ERVL -50 347 1 232 241 121 0 chr1 89565011 89565069 -153099284 + MIR SINE MIR 104 168 -94 * 240 342 13 0 chr1 89565053 89565129 -153099224 - L2 LINE L2 0 3272 3196 196 320 40 0 chr1 89565824 89565924 -153098429 - MIR SINE MIR -2 260 157 588 291 67 5 chr1 89565955 89566178 -153098175 + MIR SINE MIR 26 262 0 23 33 0 0 chr1 89567577 89567607 -153096746 + AT_rich Low_complexity Low_complexity 1 30 0 757 53 0 0 chr1 89568083 89568178 -153096175 - L1PA4 LINE L1 -5 6150 6056 376 291 31 8 chr1 89568851 89568978 -153095375 - L2 LINE L2 0 3313 3184 321 372 78 0 chr1 89569327 89569456 -153094897 + L2 LINE L2 3134 3272 0 23 68 0 0 chr1 89570027 89570071 -153094282 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr1 89570296 89570319 -153094034 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr1 89570716 89570751 -153093602 + AT_rich Low_complexity Low_complexity 1 35 0 2100 143 65 3 chr1 89572914 89573299 -153091054 - L1MA9 LINE L1 -121 6191 5783 573 238 7 0 chr1 89573403 89573554 -153090799 - L1MA9 LINE L1 0 6312 6161 228 35 0 0 chr1 89574408 89574437 -153089916 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr1 89575486 89575507 -153088846 + AT_rich Low_complexity Low_complexity 1 21 0 288 338 101 7 chr1 89575929 89576068 -153088285 - L3 LINE CR1 -23 1554 1403 2088 170 5 10 chr1 89576069 89576452 -153087901 - L1PB4 LINE L1 0 6156 5776 187 103 44 44 chr1 89576453 89576521 -153087832 + (CATAT)n Simple_repeat Simple_repeat 3 70 0 899 147 37 6 chr1 89576523 89576686 -153087667 - L1PB4 LINE L1 -367 5789 5622 709 347 169 9 chr1 89576718 89577246 -153087107 - L3 LINE CR1 -225 1352 741 266 360 75 6 chr1 89577287 89577448 -153086905 - L3 LINE CR1 -955 622 451 35 0 0 0 chr1 89578021 89578056 -153086297 + AT_rich Low_complexity Low_complexity 1 35 0 958 182 0 0 chr1 89578414 89578579 -153085774 + MER2 DNA MER2_type 41 205 -140 21 36 0 0 chr1 89578586 89578614 -153085739 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 89578738 89578768 -153085585 + AT_rich Low_complexity Low_complexity 1 30 0 216 330 75 11 chr1 89579176 89579270 -153085083 + MIR SINE MIR 1 100 -162 2212 214 40 6 chr1 89579297 89579436 -153084917 - MER45B DNA AcHobo -546 1035 902 2117 50 86 0 chr1 89579436 89579715 -153084638 - AluY SINE Alu -8 303 1 2212 214 40 6 chr1 89579715 89580095 -153084258 - MER45B DNA AcHobo -679 902 498 1045 281 33 13 chr1 89580195 89580494 -153083859 - MER45B DNA AcHobo -735 305 1 217 186 169 0 chr1 89580559 89580618 -153083735 + L2 LINE L2 3204 3272 0 23 0 0 0 chr1 89580646 89580669 -153083684 + AT_rich Low_complexity Low_complexity 1 23 0 215 333 12 24 chr1 89580881 89580965 -153083388 + L2 LINE L2 3195 3277 -36 486 139 13 0 chr1 89581810 89581889 -153082464 + MADE1 DNA Mariner 1 80 0 680 318 38 23 chr1 89581972 89582368 -153081985 - L1MC4a LINE L1 -1873 5935 5534 973 159 25 0 chr1 89583244 89583401 -153080952 + FRAM SINE Alu 1 158 -18 211 381 0 12 chr1 89583433 89583517 -153080836 + MER5A DNA MER1_type 99 181 -8 254 369 23 23 chr1 89583942 89584072 -153080281 - MIR SINE MIR -113 149 20 205 316 164 12 chr1 89584651 89584822 -153079531 - MIR SINE MIR -18 244 48 1135 273 63 32 chr1 89585967 89586647 -153077706 + L1ME3 LINE L1 5181 5874 -288 1774 158 59 0 chr1 89586855 89587178 -153077175 - MER2 DNA MER2_type 0 344 3 495 0 0 0 chr1 89587178 89587233 -153077120 + (TG)n Simple_repeat Simple_repeat 2 56 0 27 0 0 0 chr1 89587387 89587414 -153076939 + AT_rich Low_complexity Low_complexity 1 27 0 205 181 36 48 chr1 89587438 89587521 -153076832 + GA-rich Low_complexity Low_complexity 2 83 0 223 351 91 6 chr1 89587521 89587674 -153076679 + MIR SINE MIR 41 205 -57 767 194 19 57 chr1 89588372 89588583 -153075770 + MER20 DNA MER1_type 1 203 -16 22 0 0 0 chr1 89589116 89589138 -153075215 + AT_rich Low_complexity Low_complexity 1 22 0 1915 136 11 0 chr1 89589836 89590116 -153074237 + AluJb SINE Alu 1 283 -29 188 0 74 0 chr1 89590119 89590146 -153074207 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 289 324 10 0 chr1 89592213 89592315 -153072038 + T-rich Low_complexity Low_complexity 4 106 0 228 343 129 49 chr1 89592787 89593073 -153071280 - L3 LINE CR1 -187 1390 1082 189 0 0 0 chr1 89593456 89593477 -153070876 + (T)n Simple_repeat Simple_repeat 1 21 0 326 325 41 41 chr1 89594103 89594300 -153070053 - L3 LINE CR1 -709 868 672 23 33 0 0 chr1 89595128 89595158 -153069195 + AT_rich Low_complexity Low_complexity 1 30 0 377 324 81 29 chr1 89596688 89596732 -153067621 + Charlie8 DNA MER1_type 89 129 -2288 1901 109 8 0 chr1 89596732 89596999 -153067354 - AluSx SINE Alu -5 307 39 377 324 81 29 chr1 89596999 89597127 -153067226 + Charlie8 DNA MER1_type 129 270 -2147 1344 157 0 0 chr1 89598516 89598732 -153065621 + AluSg/x SINE Alu 95 310 0 1057 164 0 0 chr1 89599332 89599509 -153064844 - AluSg/x SINE Alu -2 310 134 572 200 0 0 chr1 89599597 89599702 -153064651 + L1P LINE L1 3359 3463 -2683 284 215 38 38 chr1 89600579 89600658 -153063695 + L3 LINE CR1 575 653 -924 382 314 58 47 chr1 89600964 89601155 -153063198 + MIR SINE MIR 24 216 -46 1713 127 0 16 chr1 89601321 89601590 -153062763 - AluSx SINE Alu 0 308 44 932 329 145 18 chr1 89601654 89602335 -153062018 + L3 LINE CR1 653 1420 -157 23 33 0 0 chr1 89602512 89602542 -153061811 + AT_rich Low_complexity Low_complexity 1 30 0 429 217 23 8 chr1 89603259 89603388 -153060965 + GA-rich Low_complexity Low_complexity 2 132 0 295 287 25 8 chr1 89605683 89605805 -153058548 + GA-rich Low_complexity Low_complexity 4 127 0 323 336 53 8 chr1 89606147 89606278 -153058075 + LTR16A LTR ERVL 81 217 -233 278 314 110 64 chr1 89606536 89606772 -153057581 - MIR SINE MIR -10 252 6 219 408 57 19 chr1 89606945 89607102 -153057251 - L2 LINE L2 -8 3264 3102 332 285 81 0 chr1 89607653 89607776 -153056577 + L2 LINE L2 3181 3313 0 210 254 0 79 chr1 89607797 89607860 -153056493 - L2 LINE L2 -2 3311 3254 484 295 35 59 chr1 89608136 89608390 -153055963 + MIR SINE MIR 9 256 -6 3234 153 61 11 chr1 89608434 89609004 -153055349 + LTR26 LTR ERV1 1 599 -4 232 289 54 114 chr1 89610901 89611067 -153053286 - MIR3 SINE MIR -37 171 16 21 36 0 0 chr1 89611073 89611101 -153053252 + AT_rich Low_complexity Low_complexity 1 28 0 330 303 15 8 chr1 89611174 89611306 -153053047 - MIR SINE MIR -51 211 79 321 257 42 117 chr1 89613027 89613251 -153051102 + MIR SINE MIR 5 215 -47 184 347 0 28 chr1 89613865 89613937 -153050416 - L2 LINE L2 -3 3269 3200 2465 179 27 5 chr1 89614358 89614805 -153049548 - MSTB2 LTR MaLR 0 457 1 200 317 154 0 chr1 89615780 89615884 -153048469 + L2 LINE L2 3153 3272 0 2832 10 0 0 chr1 89616045 89616357 -153047996 + AluYb8 SINE Alu 1 312 -6 23 0 0 0 chr1 89616642 89616665 -153047688 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 89616887 89616908 -153047445 + AT_rich Low_complexity Low_complexity 1 21 0 371 118 47 0 chr1 89616947 89617032 -153047321 + (TA)n Simple_repeat Simple_repeat 1 89 0 402 343 77 0 chr1 89617141 89617322 -153047031 + L2 LINE L2 2090 2284 -1030 1522 194 93 6 chr1 89667561 89667885 -152996468 - MLT1E1 LTR MaLR -301 353 2 31 0 0 0 chr1 89668211 89668242 -152996111 + AT_rich Low_complexity Low_complexity 1 31 0 315 85 0 0 chr1 89668461 89668508 -152995845 + (TC)n Simple_repeat Simple_repeat 2 48 0 262 229 0 0 chr1 89669066 89669127 -152995226 + (TA)n Simple_repeat Simple_repeat 2 62 0 2055 117 7 0 chr1 89669428 89669744 -152994609 + AluSx SINE Alu 1 318 0 32 57 0 0 chr1 89670701 89670754 -152993599 + AT_rich Low_complexity Low_complexity 1 53 0 241 290 11 32 chr1 89671549 89671642 -152992711 + MIR SINE MIR 159 249 -13 208 290 0 0 chr1 89671642 89671704 -152992649 + (CAT)n Simple_repeat Simple_repeat 2 63 0 242 333 67 17 chr1 89671710 89671830 -152992523 + MIR SINE MIR 10 135 -127 325 332 16 4 chr1 89673631 89673774 -152990579 + MIR SINE MIR 38 145 -63 216 264 88 22 chr1 89676752 89676767 -152987586 - MIR SINE MIR -50 212 199 816 265 0 0 chr1 89676767 89676956 -152987397 + MER5A DNA MER1_type 1 189 0 216 264 88 22 chr1 89676956 89677031 -152987322 - MIR SINE MIR -63 199 116 661 301 62 28 chr1 89677043 89677491 -152986862 - LTR33A LTR ERVL 0 523 1 208 302 38 57 chr1 89677497 89677603 -152986750 - MIR SINE MIR -145 117 14 305 24 24 0 chr1 89677977 89678019 -152986334 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr1 89678726 89678768 -152985585 + AT_rich Low_complexity Low_complexity 1 42 0 1463 249 37 64 chr1 89679772 89680094 -152984259 - LTR16A LTR ERVL 0 450 142 521 88 12 12 chr1 89680094 89680174 -152984179 + MADE1 DNA Mariner 1 80 0 1463 249 37 64 chr1 89680174 89680288 -152984065 - LTR16A LTR ERVL -308 142 26 301 274 0 0 chr1 89680415 89680477 -152983876 + L2 LINE L2 3246 3307 -6 258 360 0 0 chr1 89681495 89681584 -152982769 + CT-rich Low_complexity Low_complexity 2 90 0 243 0 0 0 chr1 89681791 89681818 -152982535 + (TAA)n Simple_repeat Simple_repeat 1 27 0 433 297 90 7 chr1 89683496 89683641 -152980712 - MIR SINE MIR -86 176 20 1969 98 4 4 chr1 89683741 89684016 -152980337 + AluY SINE Alu 37 311 0 349 297 51 0 chr1 89684672 89684790 -152979563 + MLT1J2 LTR MaLR 94 217 -233 39 0 0 0 chr1 89685125 89685164 -152979189 + AT_rich Low_complexity Low_complexity 1 39 0 735 310 76 34 chr1 89685216 89685623 -152978730 - L2 LINE L2 -3 3310 2887 1303 168 53 11 chr1 89685652 89685970 -152978383 - MLT1B LTR MaLR -10 380 1 373 272 172 17 chr1 89686013 89686193 -152978160 - L2 LINE L2 -524 2790 2583 220 243 129 0 chr1 89686296 89686366 -152977987 - MIR SINE MIR -64 144 66 457 331 88 11 chr1 89686457 89686717 -152977636 + L2 LINE L2 2967 3246 -67 351 167 33 0 chr1 89686742 89686832 -152977521 + (TA)n Simple_repeat Simple_repeat 1 93 0 231 0 77 0 chr1 89686966 89687005 -152977348 + T-rich Low_complexity Low_complexity 90 131 0 301 160 93 27 chr1 89687009 89687084 -152977269 - L1M4 LINE L1 -512 5672 5593 5196 63 17 19 chr1 89687086 89687789 -152976564 - SVA Other Other 0 1386 685 180 0 0 0 chr1 89689038 89689058 -152975295 + (T)n Simple_repeat Simple_repeat 1 20 0 908 208 98 76 chr1 89690739 89691095 -152973258 + MLT1J1 LTR MaLR 21 384 -62 320 340 59 44 chr1 89691342 89691545 -152972808 + MIR3 SINE MIR 3 208 0 415 301 51 20 chr1 89691890 89692086 -152972267 + MIR SINE MIR 58 259 -3 257 324 78 78 chr1 89692383 89692639 -152971714 - MIR SINE MIR -5 257 2 290 325 9 26 chr1 89693785 89693899 -152970454 - MLT1J1 LTR MaLR -65 484 373 1120 243 92 39 chr1 89696708 89697144 -152967209 + MER69 DNA AcHobo 47 505 -2021 1842 197 68 43 chr1 89697153 89697711 -152966642 + MER69 DNA AcHobo 1955 2526 0 339 78 0 0 chr1 89697745 89697796 -152966557 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 212 0 36 0 chr1 89698318 89698346 -152966007 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 21 0 0 0 chr1 89698581 89698602 -152965751 + AT_rich Low_complexity Low_complexity 1 21 0 308 372 22 22 chr1 89698659 89698842 -152965511 + MIR SINE MIR 30 212 -50 289 322 57 45 chr1 89699709 89699886 -152964467 - MIR SINE MIR -37 225 47 196 325 69 25 chr1 89699981 89700141 -152964212 - MIR SINE MIR -12 250 84 1239 180 9 5 chr1 89701066 89701288 -152963065 + AluJo SINE Alu 49 271 -41 1260 170 151 11 chr1 89701288 89701469 -152962884 + MSTA LTR MaLR 4 235 -193 198 0 0 0 chr1 89701469 89701491 -152962862 + (TC)n Simple_repeat Simple_repeat 1 22 0 1260 170 151 11 chr1 89701491 89701574 -152962779 + MSTA LTR MaLR 235 305 -123 227 248 124 39 chr1 89701686 89701815 -152962538 + LTR16C LTR ERVL 344 483 -8 410 219 37 0 chr1 89703622 89703704 -152960649 + L2 LINE L2 3225 3309 -4 652 270 107 30 chr1 89704390 89704660 -152959693 - MLT1J1 LTR MaLR -125 321 31 1349 284 42 13 chr1 89704661 89705109 -152959244 + LTR16B LTR ERVL 2 462 -2 1505 237 6 3 chr1 89706212 89706524 -152957829 + LTR16C LTR ERVL 179 491 0 493 263 36 0 chr1 89707054 89707191 -152957162 + MIR SINE MIR 86 227 -35 662 324 95 9 chr1 89707372 89707687 -152956666 + LTR16A LTR ERVL 109 450 0 615 315 122 22 chr1 89708293 89708696 -152955657 - L3 LINE CR1 -172 1405 963 28 29 0 0 chr1 89710192 89710227 -152954126 + AT_rich Low_complexity Low_complexity 1 35 0 2003 89 0 70 chr1 89710666 89711019 -152953334 + AluSx SINE Alu 1 332 0 383 250 9 65 chr1 89711498 89711606 -152952747 - MIR SINE MIR -79 183 82 25 0 0 0 chr1 89712434 89712459 -152951894 + AT_rich Low_complexity Low_complexity 1 25 0 5833 110 10 55 chr1 89712459 89713512 -152950841 - L1PA8 LINE L1 -11 6161 5115 2189 135 0 0 chr1 89713512 89713823 -152950530 - AluSx SINE Alu -1 311 1 5833 110 10 55 chr1 89713823 89713912 -152950441 - L1PA8 LINE L1 -1057 5115 5024 6646 104 14 4 chr1 89713916 89714920 -152949433 + L1PA8 LINE L1 3999 5012 -1134 2383 163 29 96 chr1 89715431 89715978 -152948375 + MLT2B3 LTR ERVL 1 506 -48 411 73 0 0 chr1 89715978 89716033 -152948320 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2383 163 29 96 chr1 89716033 89716079 -152948274 + MLT2B3 LTR ERVL 506 554 0 244 311 22 22 chr1 89716142 89716232 -152948121 - MLT1K LTR MaLR -490 98 9 355 388 104 17 chr1 89716766 89717111 -152947242 - L2 LINE L2 -337 2977 2603 1247 218 156 33 chr1 89717136 89717586 -152946767 - MLT1D LTR MaLR 0 505 1 236 305 232 0 chr1 89718745 89718896 -152945457 + L2 LINE L2 2154 2339 -975 859 294 110 33 chr1 89719281 89719736 -152944617 - MLT1H1 LTR MaLR -15 540 51 1929 65 0 12 chr1 89719744 89720014 -152944339 - AluY SINE Alu 0 304 38 26 64 0 0 chr1 89720189 89720236 -152944117 + AT_rich Low_complexity Low_complexity 1 47 0 411 272 99 30 chr1 89721202 89721404 -152942949 + MLT1L LTR MaLR 398 613 -2 232 302 0 0 chr1 89721977 89722040 -152942313 - L2 LINE L2 0 3272 3210 416 307 25 8 chr1 89723317 89723482 -152940871 + MIR3 SINE MIR 3 174 -34 21 0 0 0 chr1 89724673 89724694 -152939659 + AT_rich Low_complexity Low_complexity 1 21 0 1391 216 84 24 chr1 89724763 89725133 -152939220 - MLT1C LTR MaLR -8 459 68 3590 120 2 0 chr1 89725489 89726021 -152938332 - L1PA14 LINE L1 -4 6157 5625 180 158 0 0 chr1 89726124 89726162 -152938191 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 202 356 81 16 chr1 89726201 89726448 -152937905 + L2 LINE L2 1575 1837 -1477 386 261 139 9 chr1 89726491 89726606 -152937747 - L2 LINE L2 0 3272 3143 242 276 166 28 chr1 89726881 89727026 -152937327 + L2 LINE L2 3149 3313 0 392 296 130 0 chr1 89727035 89727150 -152937203 + L2 LINE L2 3143 3272 0 1941 122 0 3 chr1 89727535 89727853 -152936500 + AluSx SINE Alu 1 317 0 270 293 98 116 chr1 89728905 89729181 -152935172 + L2 LINE L2 2910 3189 -124 1080 200 23 9 chr1 89729181 89729396 -152934957 + MER20 DNA MER1_type 1 218 -1 270 293 98 116 chr1 89729396 89729424 -152934929 + L2 LINE L2 3189 3216 -97 2139 107 7 10 chr1 89729424 89729733 -152934620 + AluSc SINE Alu 1 308 -1 270 293 98 116 chr1 89729733 89729833 -152934520 + L2 LINE L2 3216 3308 -5 1227 220 3 24 chr1 89732061 89732396 -152931957 - AluJb SINE Alu 0 312 5 201 172 17 35 chr1 89732875 89732933 -152931420 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 315 85 0 0 chr1 89733123 89733170 -152931183 + (TC)n Simple_repeat Simple_repeat 2 48 0 254 321 57 47 chr1 89733369 89733475 -152930878 + MIR SINE MIR 18 124 -84 21 36 0 0 chr1 89733614 89733642 -152930711 + AT_rich Low_complexity Low_complexity 1 28 0 245 247 54 0 chr1 89733743 89733836 -152930517 - MER103 DNA DNA -53 113 16 187 268 0 0 chr1 89734978 89735019 -152929334 - MIR SINE MIR -76 132 92 378 279 147 0 chr1 89735363 89735492 -152928861 - MIR SINE MIR -21 241 94 337 323 44 52 chr1 89735525 89735754 -152928599 - MIR SINE MIR -27 235 9 591 343 50 0 chr1 89735966 89736205 -152928148 - MIR SINE MIR 0 262 12 24 0 0 0 chr1 89738623 89738647 -152925706 + AT_rich Low_complexity Low_complexity 1 24 0 419 113 14 0 chr1 89739539 89739610 -152924743 + (TA)n Simple_repeat Simple_repeat 1 72 0 185 407 66 0 chr1 89740738 89740829 -152923524 + L2 LINE L2 3199 3295 -18 447 322 174 43 chr1 89741185 89742068 -152922285 + L2 LINE L2 1049 1815 -1499 1125 239 5 0 chr1 89742068 89742290 -152922063 + MER58A DNA MER1_type 1 223 -1 447 322 174 43 chr1 89742290 89742852 -152921501 + L2 LINE L2 1815 2683 -631 312 48 0 0 chr1 89742899 89742941 -152921412 + (CA)n Simple_repeat Simple_repeat 2 43 0 279 415 7 0 chr1 89743089 89743224 -152921129 + L2 LINE L2 3137 3272 0 21 0 0 0 chr1 89743280 89743301 -152921052 + AT_rich Low_complexity Low_complexity 1 21 0 33 73 0 0 chr1 89743720 89743788 -152920565 + AT_rich Low_complexity Low_complexity 1 68 0 2308 83 0 23 chr1 89745315 89745616 -152918737 + AluSc SINE Alu 1 294 -15 2021 125 0 23 chr1 89745718 89746021 -152918332 + AluSc SINE Alu 14 309 0 279 271 90 45 chr1 89746227 89746360 -152917993 + MLT1J LTR MaLR 373 511 0 1082 200 78 6 chr1 89746366 89746698 -152917655 - MER119 DNA MER1_type -10 573 122 22 0 0 0 chr1 89749347 89749369 -152914984 + AT_rich Low_complexity Low_complexity 1 22 0 253 264 140 38 chr1 89751250 89751433 -152912920 + L1P4 LINE L1 5561 5790 -375 402 143 39 0 chr1 89751433 89751510 -152912843 + MER116 DNA Mariner 1 80 0 253 264 140 38 chr1 89751510 89751580 -152912773 + L1P4 LINE L1 5790 5851 -314 198 0 0 0 chr1 89751609 89751631 -152912722 + (TA)n Simple_repeat Simple_repeat 2 23 0 247 264 139 40 chr1 89752772 89752955 -152911398 + L1P4 LINE L1 5561 5788 -377 430 130 39 0 chr1 89752955 89753032 -152911321 + MER116 DNA Mariner 1 80 0 247 264 139 40 chr1 89753032 89753103 -152911250 + L1P4 LINE L1 5788 5851 -314 216 0 0 0 chr1 89753136 89753160 -152911193 + (TA)n Simple_repeat Simple_repeat 2 25 0 444 82 0 0 chr1 89754107 89754168 -152910185 + (TA)n Simple_repeat Simple_repeat 1 61 0 2113 94 3 44 chr1 89754897 89755216 -152909137 - AluSq SINE Alu -7 306 1 21 0 0 0 chr1 89755362 89755383 -152908970 + AT_rich Low_complexity Low_complexity 1 21 0 416 292 15 28 chr1 89755453 89755615 -152908738 - MIR SINE MIR -45 163 5 202 359 98 55 chr1 89755665 89756013 -152908340 - L2 LINE L2 -912 2402 2040 * 284 301 9 80 chr1 89756012 89756125 -152908228 + L2 LINE L2 3196 3300 -13 2070 144 0 0 chr1 89756210 89756516 -152907837 - AluSq SINE Alu -7 306 1 24 32 0 0 chr1 89757040 89757071 -152907282 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 89757177 89757199 -152907154 + AT_rich Low_complexity Low_complexity 1 22 0 365 312 57 19 chr1 89757310 89757467 -152906886 + MIR SINE MIR 19 181 -81 230 403 0 0 chr1 89757458 89757530 -152906823 + L2 LINE L2 3153 3224 -48 * 198 363 11 44 chr1 89758640 89758731 -152905622 + MIR SINE MIR 54 141 -67 318 321 18 67 chr1 89760058 89760223 -152904130 + MIR SINE MIR 70 226 -36 277 317 117 0 chr1 89760596 89760716 -152903637 - L3b LINE CR1 -171 1412 1279 427 323 16 0 chr1 89760866 89760993 -152903360 - L3b LINE CR1 -176 1407 1279 537 235 65 20 chr1 89762348 89762548 -152901805 - LTR54 LTR ERV1 -5 505 297 402 165 55 92 chr1 89762580 89762689 -152901664 - LTR54 LTR ERV1 -328 182 78 439 320 106 26 chr1 89762737 89763078 -152901275 - HAL1b LINE L1 -598 750 383 1921 86 7 76 chr1 89763080 89763384 -152900969 + AluSg1 SINE Alu 22 304 -5 689 222 75 0 chr1 89763392 89763613 -152900740 + L1ME2 LINE L1 5222 5456 -718 * 2389 157 57 22 chr1 89763607 89763733 -152900620 + L1MB3 LINE L1 5678 5798 -385 2619 36 0 3 chr1 89763733 89764041 -152900312 + AluY SINE Alu 1 307 -4 2389 157 57 22 chr1 89764041 89764374 -152899979 + L1MB3 LINE L1 5798 6153 -30 24 32 0 0 chr1 89764374 89764405 -152899948 + AT_rich Low_complexity Low_complexity 1 31 0 2098 219 129 19 chr1 89764514 89765150 -152899203 + L1ME2 LINE L1 5451 6156 -8 892 347 97 29 chr1 89765458 89766115 -152898238 + L2 LINE L2 1829 2530 -784 333 0 0 0 chr1 89766277 89766314 -152898039 + (CA)n Simple_repeat Simple_repeat 2 38 0 1624 161 0 19 chr1 89766320 89766587 -152897766 - AluJo SINE Alu -31 281 20 334 337 106 37 chr1 89766988 89767234 -152897119 + L2 LINE L2 2715 2977 -337 1532 232 14 17 chr1 89767474 89767836 -152896517 - MLT1A1 LTR MaLR -2 363 3 6162 108 21 11 chr1 89767923 89768887 -152895466 + L1MA3 LINE L1 5332 6304 -1 313 230 75 19 chr1 89769543 89769681 -152894672 + L1MDb LINE L1 1253 1403 -5006 5039 121 12 6 chr1 89769681 89771204 -152893149 - L1PA13 LINE L1 -4 6159 4597 313 230 75 19 chr1 89771204 89771226 -152893127 + L1MDb LINE L1 1403 1422 -4987 260 27 27 0 chr1 89771338 89771375 -152892978 + (TG)n Simple_repeat Simple_repeat 2 39 0 476 308 70 39 chr1 89771417 89771729 -152892624 + L1MDb LINE L1 2532 2853 -3553 1735 146 8 0 chr1 89771764 89772032 -152892321 + AluSx SINE Alu 9 278 -34 242 109 0 0 chr1 89772054 89772100 -152892253 - LTR66 LTR ERVL -171 439 394 204 125 0 0 chr1 89772104 89772136 -152892217 + (TA)n Simple_repeat Simple_repeat 2 33 0 687 314 111 58 chr1 89772280 89773183 -152891170 + L1MDb LINE L1 3175 4125 -2281 2118 111 0 0 chr1 89773199 89773497 -152890856 + AluSx SINE Alu 1 298 -14 770 319 62 24 chr1 89773668 89774380 -152889973 + L1MDb LINE L1 4369 5107 -1299 385 306 126 39 chr1 89774400 89774981 -152889372 + L1MDb LINE L1 5157 5796 -765 213 39 0 0 chr1 89775258 89775284 -152889069 + (TTA)n Simple_repeat Simple_repeat 2 27 0 5117 62 28 1 chr1 89775291 89775966 -152888387 - L1PA7 LINE L1 -15 6139 5447 474 0 0 0 chr1 89775966 89776022 -152888331 + L1PA7 LINE L1 5417 5472 -683 527 245 51 69 chr1 89776160 89776376 -152887977 - MER58C DNA MER1_type 0 215 4 1805 248 39 14 chr1 89776417 89777066 -152887287 - L1M4 LINE L1 -2724 3422 2758 1391 295 76 19 chr1 89777498 89778114 -152886239 + L1ME1 LINE L1 30 686 -5710 207 0 0 0 chr1 89778114 89778137 -152886216 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1391 295 76 19 chr1 89778137 89778161 -152886192 + L1ME1 LINE L1 686 707 -5689 * 2638 233 57 31 chr1 89778158 89779590 -152884763 + L1ME1 LINE L1 4773 6232 -3 2200 89 0 13 chr1 89779775 89780089 -152884264 + AluY SINE Alu 1 310 -1 793 146 13 0 chr1 89780089 89780240 -152884113 + GA-rich Low_complexity Low_complexity 2 154 0 195 42 0 0 chr1 89781015 89781039 -152883314 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 1291 269 94 54 chr1 89781164 89782057 -152882296 - L2 LINE L2 -37 3276 2359 200 359 68 8 chr1 89782081 89782198 -152882155 - L2 LINE L2 -20 3293 3170 21 0 0 0 chr1 89782749 89782770 -152881583 + AT_rich Low_complexity Low_complexity 1 21 0 248 204 19 0 chr1 89783246 89783300 -152881053 + (TA)n Simple_repeat Simple_repeat 2 56 0 417 219 28 177 chr1 89783376 89783664 -152880689 - MIR SINE MIR -10 252 8 1970 125 14 0 chr1 89785157 89785453 -152878900 - AluSx SINE Alu -12 300 1 2557 114 8 11 chr1 89786496 89786872 -152877481 + THE1C LTR MaLR 1 375 0 362 386 74 17 chr1 89788635 89789052 -152875301 - L2 LINE L2 -648 2666 2226 180 281 135 67 chr1 89789348 89789437 -152874916 + MIR SINE MIR 70 164 -98 244 298 50 25 chr1 89789687 89789808 -152874545 + MIR SINE MIR 80 203 -59 630 169 8 8 chr1 89789909 89790027 -152874326 - FLAM_C SINE Alu -15 118 1 395 292 33 0 chr1 89790396 89790516 -152873837 - MLT1I LTR MaLR -17 392 269 9669 202 29 14 chr1 89790539 89792907 -152871446 - L1PA16 LINE L1 -9 7595 5163 1795 185 0 3 chr1 89792907 89793209 -152871144 - AluJb SINE Alu -11 301 1 9669 202 29 14 chr1 89793209 89794197 -152870156 - L1PA16 LINE L1 -2441 5163 4191 1034 310 28 10 chr1 89794192 89794589 -152869764 - L1PA16 LINE L1 -4996 2585 2182 * 2230 103 0 7 chr1 89794678 89794979 -152869374 - AluSg SINE Alu -10 300 2 383 273 0 36 chr1 89795123 89795233 -152869120 - L1PA16 LINE L1 -5392 2189 2084 1316 318 17 38 chr1 89795328 89795969 -152868384 - L1PA16 LINE L1 -6170 1404 1 427 326 43 27 chr1 89796001 89796188 -152868165 - MLT1I LTR MaLR -157 252 63 764 276 114 44 chr1 89796425 89796766 -152867587 - MER115 DNA AcHobo -1 692 328 2079 125 7 3 chr1 89797133 89797437 -152866916 + AluSx SINE Alu 1 305 -7 1361 136 18 51 chr1 89797446 89797719 -152866634 + L1MA6 LINE L1 6032 6295 -5 27 49 0 0 chr1 89797931 89797972 -152866381 + AT_rich Low_complexity Low_complexity 1 41 0 618 328 49 18 chr1 89798970 89799378 -152864975 - L2 LINE L2 -264 3049 2624 2318 106 12 82 chr1 89800519 89800924 -152863429 - MER51B LTR ERV1 0 377 1 751 255 77 87 chr1 89801531 89801935 -152862418 - MLT1I LTR MaLR -9 400 1 3211 212 34 30 chr1 89802651 89803518 -152860835 - L1ME1 LINE L1 -9 6157 5287 21 36 0 0 chr1 89803522 89803550 -152860803 + AT_rich Low_complexity Low_complexity 1 28 0 1169 273 82 9 chr1 89803601 89804026 -152860327 - L1MC4 LINE L1 -144 7898 7443 449 215 89 25 chr1 89804049 89804065 -152860288 - L1MA10 LINE L1 0 6334 6319 2925 213 61 16 chr1 89804065 89804836 -152859517 - L1ME1 LINE L1 -5 6161 5356 939 303 105 26 chr1 89805400 89805790 -152858563 + MLT1J2 LTR MaLR 30 450 0 261 243 15 29 chr1 89805986 89806122 -152858231 + (TTAAA)n Simple_repeat Simple_repeat 3 136 0 407 301 136 24 chr1 89806648 89806854 -152857499 - MIR SINE MIR -14 248 20 237 33 0 0 chr1 89806877 89806907 -152857446 + (TG)n Simple_repeat Simple_repeat 1 30 0 699 126 63 16 chr1 89807157 89807284 -152857069 - THE1C LTR MaLR -240 135 3 23 0 0 0 chr1 89808626 89808649 -152855704 + AT_rich Low_complexity Low_complexity 1 23 0 1538 161 88 28 chr1 89809808 89810162 -152854191 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr1 89810396 89810417 -152853936 + AT_rich Low_complexity Low_complexity 1 21 0 400 295 128 7 chr1 89812638 89812787 -152851566 + MIR SINE MIR 28 194 -68 255 265 0 29 chr1 89814038 89814140 -152850213 + CT-rich Low_complexity Low_complexity 2 100 0 2011 122 162 5 chr1 89815016 89815386 -152848967 + MSTA LTR MaLR 1 428 0 224 333 91 59 chr1 89815931 89816150 -152848203 + L2 LINE L2 2596 2821 -493 337 282 64 27 chr1 89816476 89816586 -152847767 + MIR SINE MIR 32 145 -63 383 268 89 58 chr1 89816842 89817032 -152847321 - MIR SINE MIR -65 197 2 940 244 24 53 chr1 89817156 89817496 -152846857 + L2 LINE L2 2984 3313 0 2222 92 0 0 chr1 89817670 89817965 -152846388 + AluSc SINE Alu 1 295 -14 26 0 0 0 chr1 89818041 89818067 -152846286 + AT_rich Low_complexity Low_complexity 1 26 0 406 322 168 0 chr1 89818268 89818470 -152845883 + MIR SINE MIR 2 237 -25 395 345 108 76 chr1 89818498 89818895 -152845458 + L2 LINE L2 2863 3272 0 23 33 0 0 chr1 89820462 89820492 -152843861 + AT_rich Low_complexity Low_complexity 1 30 0 519 366 83 26 chr1 89822125 89822584 -152841769 - MLT1K LTR MaLR -64 524 40 2176 117 3 0 chr1 89823229 89823527 -152840826 - AluSq SINE Alu -14 299 1 209 105 0 26 chr1 89823800 89823838 -152840515 + (GAA)n Simple_repeat Simple_repeat 2 38 0 328 277 128 0 chr1 89824603 89824697 -152839656 + MIR SINE MIR 63 168 -94 31 26 0 0 chr1 89827102 89827140 -152837213 + AT_rich Low_complexity Low_complexity 1 38 0 1469 155 97 0 chr1 89827369 89827627 -152836726 - MER1B DNA MER1_type 0 339 57 923 70 78 0 chr1 89827658 89827787 -152836566 - MER85 DNA T2_type 0 139 1 27 29 0 0 chr1 89828538 89828572 -152835781 + AT_rich Low_complexity Low_complexity 1 34 0 228 135 0 0 chr1 89830969 89831006 -152833347 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 183 42 0 0 chr1 89831232 89831256 -152833097 + (TG)n Simple_repeat Simple_repeat 2 25 0 1064 257 29 4 chr1 89832331 89832576 -152831777 - MIR SINE MIR -10 252 2 494 299 19 59 chr1 89833450 89833721 -152830632 + MLT1K LTR MaLR 329 588 0 189 0 0 0 chr1 89833919 89833940 -152830413 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 208 121 0 0 chr1 89834164 89834197 -152830156 + (GTTTG)n Simple_repeat Simple_repeat 3 35 0 755 306 36 80 chr1 89834448 89834860 -152829493 + L2 LINE L2 2839 3232 -81 781 195 28 93 chr1 89836322 89836537 -152827816 + MER20 DNA MER1_type 1 201 -18 584 197 7 73 chr1 89836540 89836677 -152827676 + FLAM_A SINE Alu 1 128 -5 1660 181 3 0 chr1 89838010 89838344 -152826009 - AluJb SINE Alu 0 335 1 8587 114 20 6 chr1 89838700 89839969 -152824384 + HSMAR1 DNA Mariner 1 1287 0 400 235 104 0 chr1 89840904 89841019 -152823334 + MIR SINE MIR 40 166 -96 399 312 26 63 chr1 89841307 89841496 -152822857 - MER5A DNA MER1_type -7 182 1 357 289 25 31 chr1 89843586 89843745 -152820608 + L1ME3A LINE L1 5963 6120 -50 858 237 53 0 chr1 89843762 89843969 -152820384 - MER20 DNA MER1_type 0 219 2 22 0 0 0 chr1 89845681 89845703 -152818650 + AT_rich Low_complexity Low_complexity 1 22 0 1923 162 0 7 chr1 89845977 89846279 -152818074 - AluJb SINE Alu -8 304 5 6301 163 24 13 chr1 89846794 89847899 -152816454 + L1MA2 LINE L1 20 1136 -6429 613 143 0 0 chr1 89847899 89847997 -152816356 + AluJb SINE Alu 205 302 -10 13262 171 34 12 chr1 89848001 89852282 -152812071 + L1MA2 LINE L1 2840 7251 -472 740 174 0 0 chr1 89852282 89852399 -152811954 + L1MA2 LINE L1 7592 7723 0 21 0 0 0 chr1 89852399 89852420 -152811933 + AT_rich Low_complexity Low_complexity 1 21 0 302 275 0 70 chr1 89853914 89854029 -152810324 - MIR SINE MIR -63 145 66 188 318 129 12 chr1 89854256 89854341 -152810012 - L2 LINE L2 -20 3293 3199 1534 189 3 40 chr1 89855061 89855357 -152808996 + AluJo SINE Alu 1 285 -27 604 251 77 16 chr1 89855546 89855793 -152808560 - L1MA9 LINE L1 -38 6274 6013 * 5775 194 46 8 chr1 89855785 89856440 -152807913 - L1 LINE L1 -1062 6105 5383 1842 162 0 13 chr1 89856440 89856457 -152807896 - AluSx SINE Alu -13 299 283 273 29 0 0 chr1 89856457 89856491 -152807862 + (TG)n Simple_repeat Simple_repeat 1 34 0 1842 162 0 13 chr1 89856491 89856776 -152807577 - AluSx SINE Alu -29 283 1 5775 194 46 8 chr1 89856776 89857314 -152807039 - L1 LINE L1 -1784 5383 4867 * 7444 246 28 55 chr1 89857304 89859183 -152805170 - L1 LINE L1 -3233 3934 2006 1769 158 4 7 chr1 89859183 89859455 -152804898 + AluSx SINE Alu 5 275 -37 183 42 0 0 chr1 89859458 89859482 -152804871 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7444 246 28 55 chr1 89859482 89860497 -152803856 - L1 LINE L1 -5163 2004 1492 996 243 143 36 chr1 89860497 89860855 -152803498 - MSTD LTR MaLR 0 396 1 7444 246 28 55 chr1 89860855 89862283 -152802070 - L1 LINE L1 -5675 1492 27 26 0 0 0 chr1 89862563 89862589 -152801764 + AT_rich Low_complexity Low_complexity 1 26 0 2738 22 0 6 chr1 89863152 89863465 -152800888 - AluY SINE Alu 0 311 1 194 278 19 0 chr1 89863862 89863916 -152800437 - L2 LINE L2 -16 3297 3243 3934 144 99 24 chr1 89863919 89865312 -152799041 - pTR5 LTR ERV1 0 2606 1524 926 177 0 18 chr1 89865400 89865564 -152798789 - Tigger1 DNA MER2_type -1 2417 2257 1002 180 5 11 chr1 89865769 89865958 -152798395 + L1PA15 LINE L1 5577 5764 -401 1352 166 4 4 chr1 89865968 89866209 -152798144 + L1PA15 LINE L1 5925 6165 0 241 225 22 34 chr1 89866298 89866387 -152797966 - L1ME LINE L1 -687 5434 5347 12002 150 97 20 chr1 89866394 89868637 -152795716 - Tigger1 DNA MER2_type 0 2418 2 1687 174 0 10 chr1 89868684 89868972 -152795381 + AluJb SINE Alu 2 286 -26 29 28 0 0 chr1 89868973 89869009 -152795344 + AT_rich Low_complexity Low_complexity 1 36 0 789 353 76 21 chr1 89869010 89869724 -152794629 - L2 LINE L2 -214 3099 2355 337 355 0 42 chr1 89869832 89870049 -152794304 - MIR SINE MIR -45 217 10 2052 98 22 32 chr1 89870521 89870837 -152793516 + AluSp SINE Alu 1 313 0 2335 112 0 0 chr1 89871006 89871309 -152793044 + AluSx SINE Alu 1 303 -9 560 322 167 43 chr1 89871596 89872364 -152791989 - L2 LINE L2 -4 3268 2418 360 232 122 46 chr1 89872877 89872969 -152791384 - Charlie2a DNA MER1_type -1846 1016 932 2033 127 7 7 chr1 89872969 89873268 -152791085 + AluSp SINE Alu 1 299 -14 360 232 122 46 chr1 89873268 89873438 -152790915 - Charlie2a DNA MER1_type -1930 932 734 545 276 222 0 chr1 89873441 89873814 -152790539 - Charlie2 DNA MER1_type -2392 470 6 221 158 26 0 chr1 89874404 89874442 -152789911 + GA-rich Low_complexity Low_complexity 3 41 0 209 159 23 0 chr1 89874544 89874588 -152789765 + (TA)n Simple_repeat Simple_repeat 1 45 0 183 42 0 0 chr1 89874720 89874744 -152789609 + (TG)n Simple_repeat Simple_repeat 2 25 0 2228 94 3 0 chr1 89875399 89875696 -152788657 + AluSg SINE Alu 1 298 -12 2253 113 0 0 chr1 89876814 89877114 -152787239 - AluSq SINE Alu -13 300 1 237 276 61 0 chr1 89877120 89877218 -152787135 - MER112 DNA MER1_type -127 133 30 1282 123 85 0 chr1 89877483 89877695 -152786658 + MER30 DNA MER1_type 1 230 0 231 200 0 0 chr1 89877735 89877780 -152786573 + L2 LINE L2 3269 3313 0 2577 61 0 0 chr1 89878035 89878345 -152786008 - AluY SINE Alu -1 310 1 22 80 0 0 chr1 89878392 89878442 -152785911 + AT_rich Low_complexity Low_complexity 1 50 0 605 80 10 20 chr1 89878446 89878546 -152785807 - L1MA1 LINE L1 -1 6301 6203 23 0 0 0 chr1 89879150 89879173 -152785180 + AT_rich Low_complexity Low_complexity 1 23 0 502 325 107 13 chr1 89879860 89880094 -152784259 + MIR SINE MIR 6 261 -1 22 0 0 0 chr1 89880810 89880832 -152783521 + AT_rich Low_complexity Low_complexity 1 22 0 3542 193 169 97 chr1 89881317 89881840 -152782513 - L1MD3 LINE L1 -10 7985 7501 459 233 0 10 chr1 89881840 89881943 -152782410 - MLT1F1 LTR MaLR -442 125 24 3542 193 169 97 chr1 89881943 89882223 -152782130 - L1MD3 LINE L1 -494 7501 7243 1284 199 15 105 chr1 89882223 89882624 -152781729 - MLT1A1 LTR MaLR 0 365 1 3542 193 169 97 chr1 89882624 89883052 -152781301 - L1MD3 LINE L1 -752 7243 6555 22 56 0 0 chr1 89883129 89883165 -152781188 + AT_rich Low_complexity Low_complexity 1 36 0 188 305 200 0 chr1 89883316 89883411 -152780942 - L2 LINE L2 0 3313 3200 22 80 0 0 chr1 89884597 89884647 -152779706 + AT_rich Low_complexity Low_complexity 1 50 0 596 323 47 4 chr1 89885045 89885277 -152779076 - MIR SINE MIR -4 258 17 283 315 34 0 chr1 89885634 89885723 -152778630 + L2 LINE L2 3210 3301 -12 * 856 293 103 30 chr1 89885721 89886090 -152778263 - L2 LINE L2 -1 3312 2917 825 268 167 9 chr1 89886091 89886408 -152777945 - L2 LINE L2 -1381 1933 1567 339 276 44 77 chr1 89886609 89886790 -152777563 - MLT1J LTR MaLR -244 267 93 487 301 124 10 chr1 89887105 89887298 -152777055 + MIR SINE MIR 48 262 0 258 105 0 0 chr1 89887679 89887717 -152776636 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 207 302 163 23 chr1 89887745 89887874 -152776479 + MIR SINE MIR 52 198 -64 223 235 47 82 chr1 89887943 89888028 -152776325 + L2 LINE L2 3186 3267 -5 2280 136 16 13 chr1 89888041 89888415 -152775938 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr1 89890231 89890256 -152774097 + AT_rich Low_complexity Low_complexity 1 25 0 181 363 106 41 chr1 89890370 89890615 -152773738 - L3b LINE CR1 -6 1577 1317 23 0 0 0 chr1 89891042 89891065 -152773288 + AT_rich Low_complexity Low_complexity 1 23 0 243 267 12 47 chr1 89891215 89891301 -152773052 + MLT1L LTR MaLR 196 278 -337 39 80 0 0 chr1 89892914 89893002 -152771351 + AT_rich Low_complexity Low_complexity 1 88 0 3128 149 33 9 chr1 89893116 89894236 -152770117 + L1MA3 LINE L1 5110 6281 -10 1397 203 60 51 chr1 89897011 89897280 -152767073 - MLT1A1 LTR MaLR -7 358 84 991 54 78 0 chr1 89897280 89897409 -152766944 - MER85 DNA T2_type 0 139 1 1397 203 60 51 chr1 89897409 89897489 -152766864 - MLT1A1 LTR MaLR -281 84 6 186 191 0 0 chr1 89898276 89898323 -152766030 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 377 250 57 32 chr1 89898514 89898638 -152765715 - MIR SINE MIR -70 192 66 21 57 0 0 chr1 89899575 89899610 -152764743 + AT_rich Low_complexity Low_complexity 1 35 0 21 95 0 0 chr1 89900532 89900595 -152763758 + AT_rich Low_complexity Low_complexity 1 63 0 270 0 0 0 chr1 89900605 89900635 -152763718 + (TG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr1 89901257 89901280 -152763073 + AT_rich Low_complexity Low_complexity 1 23 0 1990 61 0 2 chr1 89901752 89902181 -152762172 - L1PA5 LINE L1 -3 6151 5636 270 0 0 0 chr1 89903267 89903297 -152761056 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr1 89904205 89904227 -152760126 + AT_rich Low_complexity Low_complexity 1 22 0 223 247 96 0 chr1 89904288 89904361 -152759992 - MIR SINE MIR -118 144 65 23 78 0 0 chr1 89904477 89904528 -152759825 + AT_rich Low_complexity Low_complexity 1 51 0 218 81 27 0 chr1 89904935 89904972 -152759381 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr1 89905640 89905668 -152758685 + AT_rich Low_complexity Low_complexity 1 28 0 233 343 14 0 chr1 89905726 89905799 -152758554 + L2 LINE L2 3234 3307 -6 820 118 8 0 chr1 89906616 89906743 -152757610 - L1MA3 LINE L1 0 6305 6178 3729 188 50 28 chr1 89906988 89908486 -152755867 + MER52A LTR ERV1 1 1755 0 2947 6 0 0 chr1 89908609 89908927 -152755426 + AluYb8 SINE Alu 1 318 0 1873 169 0 3 chr1 89910132 89910434 -152753919 + AluJb SINE Alu 1 301 -11 247 283 57 38 chr1 89911101 89911207 -152753146 + L2 LINE L2 3136 3243 -29 29 0 0 0 chr1 89911300 89911329 -152753024 + AT_rich Low_complexity Low_complexity 1 29 0 198 191 0 0 chr1 89914096 89914138 -152750215 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 2116 110 0 0 chr1 89916784 89917066 -152747287 + AluSc SINE Alu 1 282 -27 210 158 0 0 chr1 89918562 89918600 -152745753 + A-rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr1 89919994 89920019 -152744334 + AT_rich Low_complexity Low_complexity 1 25 0 294 143 0 0 chr1 89920098 89920147 -152744206 + (CA)n Simple_repeat Simple_repeat 2 50 0 320 343 21 0 chr1 89920605 89920748 -152743605 - MIR SINE MIR -7 255 110 1207 209 42 59 chr1 89921533 89921845 -152742508 + AluJo SINE Alu 2 308 0 3807 181 64 31 chr1 89922216 89923075 -152741278 + MER52A LTR ERV1 809 1755 0 1873 169 0 3 chr1 89924378 89924680 -152739673 + AluJb SINE Alu 1 301 -11 1803 33 5 0 chr1 89925294 89925506 -152738847 + AluY SINE Alu 93 305 -6 315 0 0 0 chr1 89925553 89925588 -152738765 + (TA)n Simple_repeat Simple_repeat 2 36 0 243 173 0 0 chr1 89927720 89927772 -152736581 + CT-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr1 89929596 89929617 -152734736 + AT_rich Low_complexity Low_complexity 1 21 0 632 187 142 8 chr1 89929650 89929784 -152734569 - L1MC1 LINE L1 0 6333 6182 21 0 0 0 chr1 89932107 89932128 -152732225 + AT_rich Low_complexity Low_complexity 1 21 0 267 333 6 68 chr1 89933151 89933313 -152731040 - MER91A DNA MER1_type -10 186 35 1462 82 24 0 chr1 89933593 89933801 -152730552 - L1PA7 LINE L1 -799 5347 5135 6262 57 4 0 chr1 89933801 89934583 -152729770 + L1PA7 LINE L1 5361 6152 -2 3401 67 0 7 chr1 89934710 89935161 -152729192 + LTR7 LTR ERV1 1 448 -2 19938 91 55 43 chr1 89935163 89938416 -152725937 + HERVH LTR ERV1 1 3290 -4423 3310 119 0 6 chr1 89938406 89938911 -152725442 + HERVH LTR ERV1 3492 3993 -3720 * 4192 149 0 19 chr1 89938913 89939585 -152724768 + HERVH LTR ERV1 4488 5146 -2567 1382 120 23 9 chr1 89939589 89939806 -152724547 + HERVH LTR ERV1 5600 5819 -1894 * 2525 77 45 13 chr1 89939804 89940182 -152724171 + HERVH LTR ERV1 7322 7711 -2 3373 73 0 7 chr1 89940184 89940635 -152723718 + LTR7 LTR ERV1 1 448 -2 276 364 40 0 chr1 89940643 89940742 -152723611 - MIR SINE MIR -66 142 40 183 167 0 0 chr1 89941021 89941063 -152723290 + (TG)n Simple_repeat Simple_repeat 1 42 0 585 196 92 18 chr1 89941216 89941379 -152722974 + 7SK RNA RNA 1 175 -18 250 77 26 0 chr1 89941401 89941440 -152722913 + 7SK RNA RNA 152 191 -2 207 0 0 0 chr1 89941440 89941463 -152722890 + (A)n Simple_repeat Simple_repeat 1 23 0 28 0 0 0 chr1 89941780 89941808 -152722545 + AT_rich Low_complexity Low_complexity 1 28 0 860 267 43 26 chr1 89943266 89943498 -152720855 - MIR SINE MIR 0 262 27 181 256 70 0 chr1 89945369 89945412 -152718941 + MER5A DNA MER1_type 13 58 -131 2546 118 3 0 chr1 89945473 89945836 -152718517 - THE1B LTR MaLR 0 364 1 1366 197 12 0 chr1 89946285 89946539 -152717814 - AluJb SINE Alu -55 257 1 352 323 63 13 chr1 89946694 89946852 -152717501 - MIR SINE MIR -65 197 32 832 211 6 17 chr1 89947595 89947770 -152716583 + FAM SINE Alu 1 173 -2 1090 283 112 36 chr1 89948085 89948953 -152715400 + L2 LINE L2 2364 3313 0 28 71 0 0 chr1 89949681 89949737 -152714616 + AT_rich Low_complexity Low_complexity 1 56 0 228 179 0 0 chr1 89949737 89949776 -152714577 - MIR SINE MIR -27 235 197 907 267 108 38 chr1 89949783 89950137 -152714216 + L2 LINE L2 2569 2897 -416 2275 98 0 9 chr1 89950137 89950452 -152713901 - AluSx SINE Alu 0 312 1 907 267 108 38 chr1 89950452 89950751 -152713602 + L2 LINE L2 2897 3270 -43 2797 140 6 2 chr1 89950751 89951235 -152713118 + L1MC2 LINE L1 5376 5869 -308 233 200 30 60 chr1 89951228 89951287 -152713066 - L1MCa LINE L1 -4362 2064 2008 * 2133 168 36 36 chr1 89951287 89951758 -152712595 + L1MC2 LINE L1 5866 6336 -8 233 200 30 60 chr1 89951758 89951798 -152712555 - L1MCa LINE L1 -4418 2008 1968 511 295 32 16 chr1 89951802 89951992 -152712361 - MIR SINE MIR -64 198 6 2060 115 11 0 chr1 89952057 89952363 -152711990 + AluSx SINE Alu 5 313 0 180 0 0 0 chr1 89953501 89953521 -152710832 + (A)n Simple_repeat Simple_repeat 1 20 0 249 33 0 0 chr1 89953908 89953938 -152710415 + (TA)n Simple_repeat Simple_repeat 2 31 0 315 0 0 0 chr1 89953940 89953975 -152710378 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr1 89955761 89955782 -152708571 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 89957288 89957309 -152707044 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr1 89957544 89957592 -152706761 + AT_rich Low_complexity Low_complexity 1 48 0 419 231 251 10 chr1 89958320 89958506 -152705847 + MIR SINE MIR 21 262 0 204 211 0 39 chr1 89960073 89960125 -152704228 + (TATG)n Simple_repeat Simple_repeat 2 51 0 281 91 91 136 chr1 89961228 89961294 -152703059 - LTR29 LTR ERV1 -78 544 482 1767 162 35 0 chr1 89961386 89961676 -152702677 + AluJb SINE Alu 1 300 -12 221 53 53 0 chr1 89963484 89963522 -152700831 + A-rich Low_complexity Low_complexity 3 42 0 1515 176 10 51 chr1 89964598 89964911 -152699442 + AluJo SINE Alu 3 302 -10 441 0 0 0 chr1 89966376 89966425 -152697928 + (TG)n Simple_repeat Simple_repeat 2 50 0 1581 182 144 9 chr1 89966949 89967268 -152697085 - MLT1A1 LTR MaLR 0 365 4 558 332 4 39 chr1 89967296 89967528 -152696825 - LTR16A LTR ERVL -109 341 118 2054 100 52 0 chr1 89967837 89968126 -152696227 - AluSp SINE Alu -9 304 1 1173 298 39 11 chr1 89968128 89968484 -152695869 - HERV16 LTR ERVL -1973 3023 2658 1144 312 50 17 chr1 89968558 89968978 -152695375 - HERV16 LTR ERVL -2429 2567 2134 869 316 61 38 chr1 89969686 89970042 -152694311 - HERV16 LTR ERVL -4333 663 253 1840 153 24 7 chr1 89970042 89970329 -152694024 - AluJb SINE Alu -19 293 2 869 316 61 38 chr1 89970329 89970589 -152693764 - HERV16 LTR ERVL -4743 253 1 953 298 43 3 chr1 89970594 89970893 -152693460 - LTR16A LTR ERVL -5 445 135 474 301 122 52 chr1 89971311 89971597 -152692756 + L2 LINE L2 3008 3313 0 351 300 165 29 chr1 89972269 89972439 -152691914 + MIR SINE MIR 20 212 -50 183 100 0 0 chr1 89972842 89972872 -152691481 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 536 222 111 0 chr1 89972895 89973012 -152691341 - FLAM_C SINE Alu -3 130 1 202 302 79 0 chr1 89973300 89973363 -152690990 - L2 LINE L2 -9 3263 3196 201 324 99 35 chr1 89973952 89974094 -152690259 - L2 LINE L2 -222 3050 2900 23 33 0 0 chr1 89974132 89974162 -152690191 + AT_rich Low_complexity Low_complexity 1 30 0 1979 140 7 0 chr1 89974211 89974497 -152689856 + AluSx SINE Alu 1 288 -24 227 292 0 0 chr1 89974532 89974621 -152689732 + L1MC4 LINE L1 6614 6702 -1340 384 152 0 0 chr1 89974622 89974688 -152689665 + (TG)n Simple_repeat Simple_repeat 2 67 0 1651 174 10 23 chr1 89974703 89975013 -152689340 + AluJo SINE Alu 4 309 -3 595 334 88 14 chr1 89975030 89975423 -152688930 + L2 LINE L2 2729 3149 -164 1102 189 204 0 chr1 89975429 89975714 -152688639 + L1MC3 LINE L1 7443 7785 0 1893 132 0 55 chr1 89975734 89976044 -152688309 + AluJb SINE Alu 9 301 -11 301 235 0 0 chr1 89976370 89976421 -152687932 + Tigger5 DNA MER2_type 2273 2323 0 21 0 0 0 chr1 89976526 89976547 -152687806 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 89976655 89976679 -152687674 + AT_rich Low_complexity Low_complexity 1 24 0 247 352 139 17 chr1 89979072 89979302 -152685051 - MIR SINE MIR 0 262 5 2302 132 31 14 chr1 89980016 89980373 -152683980 - THE1B LTR MaLR -1 363 1 748 339 61 0 chr1 89983056 89983489 -152680864 - L2 LINE L2 -157 3156 2688 275 336 44 80 chr1 89984542 89984679 -152679674 - L2 LINE L2 -19 3253 3122 793 321 102 56 chr1 89984990 89985782 -152678571 + L2 LINE L2 2238 3064 -208 397 104 26 0 chr1 89985860 89985937 -152678416 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 281 26 26 0 chr1 89987128 89987166 -152677187 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 1269 266 54 69 chr1 89987819 89988373 -152675980 - L2 LINE L2 -36 3277 2737 1017 255 57 64 chr1 89988373 89988843 -152675510 - MLT1C LTR MaLR 0 467 1 1269 266 54 69 chr1 89988843 89989146 -152675207 - L2 LINE L2 -576 2737 2431 898 272 149 28 chr1 89989434 89989804 -152674549 - MLT1H LTR MaLR -52 497 8 237 338 15 0 chr1 89989861 89989929 -152674424 + L2 LINE L2 3143 3211 -61 29 28 0 0 chr1 89990190 89990226 -152674127 + AT_rich Low_complexity Low_complexity 1 36 0 2794 10 0 3 chr1 89990404 89990714 -152673639 - AluY SINE Alu -2 309 1 251 344 74 37 chr1 89991589 89991833 -152672520 - LTR16B LTR ERVL -91 373 121 21 36 0 0 chr1 89992471 89992499 -152671854 + AT_rich Low_complexity Low_complexity 1 28 0 354 272 221 15 chr1 89994123 89994318 -152670035 - MIR SINE MIR 0 262 28 605 247 76 6 chr1 89999234 89999392 -152664961 - MIR SINE MIR -54 208 40 207 346 149 0 chr1 90002892 90002999 -152661354 + MIR SINE MIR 100 222 -40 21 57 0 0 chr1 90005423 90005458 -152658895 + AT_rich Low_complexity Low_complexity 1 35 0 210 118 0 0 chr1 90006058 90006092 -152658261 + (A)n Simple_repeat Simple_repeat 1 34 0 891 200 36 45 chr1 90006960 90007180 -152657173 + MER20 DNA MER1_type 1 218 -1 292 330 128 52 chr1 90007225 90007531 -152656822 + L2 LINE L2 2943 3271 -1 500 246 71 71 chr1 90008312 90008523 -152655830 + MIR SINE MIR 52 262 0 23 54 0 0 chr1 90008620 90008657 -152655696 + AT_rich Low_complexity Low_complexity 1 37 0 2580 47 6 22 chr1 90008864 90009182 -152655171 - AluSp SINE Alu 0 313 1 12921 126 35 26 chr1 90009711 90011870 -152652483 - Tigger1 DNA MER2_type -219 2199 23 23 78 0 0 chr1 90011923 90011974 -152652379 + AT_rich Low_complexity Low_complexity 1 51 0 337 273 23 0 chr1 90012037 90012125 -152652228 - L1MC4 LINE L1 -1339 6703 6614 * 344 273 23 0 chr1 90012051 90012139 -152652214 + L1MC4 LINE L1 6614 6703 -1339 874 333 64 19 chr1 90012191 90012753 -152651600 + L3 LINE CR1 601 1244 -333 2006 151 0 0 chr1 90012794 90013093 -152651260 - AluSx SINE Alu -13 299 1 1465 217 6 41 chr1 90013170 90013488 -152650865 - AluJo SINE Alu -5 307 1 376 310 79 79 chr1 90013655 90014155 -152650198 - L2 LINE L2 -217 3055 2530 2003 150 0 17 chr1 90014157 90014457 -152649896 + AluJb SINE Alu 1 295 -17 55 29 0 0 chr1 90014463 90014532 -152649821 + AT_rich Low_complexity Low_complexity 1 69 0 312 313 167 16 chr1 90014537 90014661 -152649692 - L2 LINE L2 -776 2538 2434 1952 155 0 0 chr1 90014661 90014952 -152649401 - AluSx SINE Alu -21 291 1 312 313 167 16 chr1 90014952 90015019 -152649334 - L2 LINE L2 -880 2434 2318 387 355 112 17 chr1 90015040 90015327 -152649026 + L3 LINE CR1 1255 1568 -9 284 290 26 58 chr1 90015607 90015762 -152648591 - MER117 DNA MER1_type -47 150 1 311 310 65 84 chr1 90019038 90019406 -152644947 - MLT1J LTR MaLR -150 361 1 363 289 33 41 chr1 90020907 90021028 -152643325 + L2 LINE L2 3149 3268 -4 416 298 7 53 chr1 90022916 90023067 -152641286 + MIR3 SINE MIR 29 172 -36 210 105 0 0 chr1 90023326 90023364 -152640989 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 2041 122 0 7 chr1 90023364 90023650 -152640703 - AluSg SINE Alu -26 284 1 505 218 109 0 chr1 90023935 90024045 -152640308 + MLT1A1 LTR MaLR 244 365 0 468 308 38 0 chr1 90024065 90024198 -152640155 + MIR SINE MIR 3 140 -122 188 286 125 0 chr1 90024997 90025053 -152639300 - MIR SINE MIR -151 111 49 194 315 127 51 chr1 90025155 90025352 -152639001 - MIR SINE MIR -50 212 1 219 103 0 0 chr1 90025769 90025808 -152638545 + (A)n Simple_repeat Simple_repeat 1 39 0 1958 217 87 84 chr1 90026650 90027472 -152636881 + LTR1B LTR ERV1 1 1020 0 1824 155 0 0 chr1 90028015 90028335 -152636018 + AluSx SINE Alu 1 320 0 360 309 110 15 chr1 90028647 90028783 -152635570 - MIR SINE MIR -109 153 5 492 337 70 41 chr1 90029050 90029293 -152635060 - MIR SINE MIR -4 258 9 261 234 104 26 chr1 90029371 90029448 -152634905 + L2 LINE L2 3154 3236 -36 207 0 0 0 chr1 90029515 90029538 -152634815 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 261 356 109 43 chr1 90029697 90030026 -152634327 + L2 LINE L2 2922 3272 0 340 359 52 21 chr1 90032629 90032821 -152631532 - MIR SINE MIR -49 213 16 2082 147 0 3 chr1 90033011 90033324 -152631029 - AluSx SINE Alu 0 312 1 818 207 11 113 chr1 90033437 90033878 -152630475 - MLT1A2 LTR MaLR -7 378 1 1010 116 7 13 chr1 90034011 90034166 -152630187 - AluSg/x SINE Alu -19 293 140 1694 207 22 39 chr1 90034167 90034331 -152630022 - MER63C DNA MER1_type -418 642 477 2300 78 37 0 chr1 90034331 90034627 -152629726 + AluSp SINE Alu 1 307 -6 1694 207 22 39 chr1 90034627 90034868 -152629485 - MER63C DNA MER1_type -583 477 244 27 0 0 0 chr1 90035091 90035118 -152629235 + AT_rich Low_complexity Low_complexity 1 27 0 398 183 108 21 chr1 90035140 90035233 -152629120 - MLT1F1 LTR MaLR -334 233 133 22 0 0 0 chr1 90035593 90035615 -152628738 + AT_rich Low_complexity Low_complexity 1 22 0 187 169 0 51 chr1 90035739 90035798 -152628555 + GA-rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr1 90035979 90036010 -152628343 + AT_rich Low_complexity Low_complexity 1 31 0 1109 217 16 110 chr1 90036494 90036876 -152627477 + MLT1A1 LTR MaLR 18 363 -2 3128 205 65 10 chr1 90036876 90037155 -152627198 + MLT1A1-int LTR MaLR 3 265 -1106 2089 119 7 7 chr1 90037155 90037449 -152626904 + AluSx SINE Alu 1 294 -18 3128 205 65 10 chr1 90037449 90037858 -152626495 + MLT1A1-int LTR MaLR 265 729 -642 268 250 0 12 chr1 90037989 90038069 -152626284 + MLT1A1-int LTR MaLR 689 767 -968 258 252 69 84 chr1 90038124 90038255 -152626098 + MLT1A1-int LTR MaLR 894 1022 -349 180 77 0 0 chr1 90038301 90038327 -152626026 + (CA)n Simple_repeat Simple_repeat 2 27 0 297 0 0 0 chr1 90039670 90039703 -152624650 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr1 90041509 90041530 -152622823 + AT_rich Low_complexity Low_complexity 1 21 0 265 271 90 33 chr1 90043053 90043175 -152621178 - MIR SINE MIR 0 262 134 271 343 49 0 chr1 90093669 90093771 -152570582 + L2 LINE L2 3121 3227 -45 270 170 21 0 chr1 90093793 90093840 -152570513 - MARNA DNA Mariner -375 211 164 1551 175 29 44 chr1 90094396 90094711 -152569642 + AluJo SINE Alu 1 310 -2 2192 110 0 0 chr1 90094786 90095077 -152569276 + AluSx SINE Alu 1 291 -21 7674 152 42 53 chr1 90095373 90095843 -152568510 + L1M4c LINE L1 314 787 -5597 1498 189 10 31 chr1 90095843 90096134 -152568219 + AluJb SINE Alu 3 287 -25 7674 152 42 53 chr1 90096134 90096376 -152567977 + L1M4c LINE L1 787 1030 -5354 2134 113 3 7 chr1 90096376 90096669 -152567684 + AluSx SINE Alu 1 292 -20 7674 152 42 53 chr1 90096669 90097550 -152566803 + L1M4c LINE L1 1030 1893 -4491 2231 122 0 0 chr1 90097550 90097853 -152566500 - AluSq SINE Alu -9 304 2 7674 152 42 53 chr1 90097853 90097881 -152566472 + L1M4c LINE L1 1893 1920 -4464 1347 262 61 15 chr1 90097881 90098339 -152566014 + L1ME3A LINE L1 5297 5775 -395 778 212 128 6 chr1 90098361 90098540 -152565813 - MER20 DNA MER1_type -17 202 2 831 276 101 12 chr1 90098547 90098873 -152565480 + L1ME3A LINE L1 5808 6162 -8 327 286 48 48 chr1 90099363 90099510 -152564843 + MLT1J LTR MaLR 307 453 -58 420 273 27 96 chr1 90100792 90100979 -152563374 - L2 LINE L2 0 3272 3099 697 195 6 25 chr1 90101197 90101356 -152562997 + MER103 DNA DNA 1 156 -10 227 318 9 36 chr1 90101814 90101924 -152562429 + CT-rich Low_complexity Low_complexity 3 109 0 180 0 0 0 chr1 90102705 90102725 -152561628 + (AGGGGG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 90104208 90104229 -152560124 + AT_rich Low_complexity Low_complexity 1 21 0 301 267 68 14 chr1 90104340 90104486 -152559867 - L1MC5 LINE L1 -36 7925 7772 997 112 0 0 chr1 90104643 90104777 -152559576 - AluSq/x SINE Alu -177 136 3 842 231 24 0 chr1 90104777 90104946 -152559407 + MER58A DNA MER1_type 34 206 -18 2054 122 0 11 chr1 90105133 90105420 -152558933 + AluSx SINE Alu 1 284 -28 223 37 0 0 chr1 90105420 90105447 -152558906 + (CAAA)n Simple_repeat Simple_repeat 2 144 0 1564 195 58 125 chr1 90105592 90105978 -152558375 + MLT1F LTR MaLR 6 417 -125 23 0 0 0 chr1 90105978 90106001 -152558352 + AT_rich Low_complexity Low_complexity 1 23 0 1710 197 0 7 chr1 90106001 90106295 -152558058 - AluJo SINE Alu -20 292 1 1564 195 58 125 chr1 90106295 90106459 -152557894 + MLT1F LTR MaLR 415 540 -2 579 242 86 11 chr1 90106469 90106655 -152557698 + MIR SINE MIR 49 248 -14 413 373 17 0 chr1 90108783 90108960 -152555393 - MIR3 SINE MIR -1 207 28 705 301 48 5 chr1 90111908 90112117 -152552236 + MIR SINE MIR 45 262 0 955 71 0 0 chr1 90112249 90112361 -152551992 + AluY SINE Alu 9 120 -191 180 0 0 0 chr1 90112361 90112381 -152551972 + (TAA)n Simple_repeat Simple_repeat 2 21 0 200 188 42 0 chr1 90112592 90112640 -152551713 + (TA)n Simple_repeat Simple_repeat 2 51 0 233 200 33 0 chr1 90114197 90114257 -152550096 + (TA)n Simple_repeat Simple_repeat 1 62 0 3249 177 31 36 chr1 90114431 90115171 -152549182 + L1MB3 LINE L1 5446 6181 -2 393 58 0 0 chr1 90116098 90116150 -152548203 + (CAG)n Simple_repeat Simple_repeat 1 52 0 180 77 0 0 chr1 90117685 90117711 -152546642 + (CAG)n Simple_repeat Simple_repeat 3 28 0 291 113 0 0 chr1 90118416 90118469 -152545884 + (CA)n Simple_repeat Simple_repeat 1 53 0 207 0 0 0 chr1 90118980 90119003 -152545350 + (A)n Simple_repeat Simple_repeat 1 23 0 1829 157 0 3 chr1 90119664 90119994 -152544359 + AluJo SINE Alu 1 329 0 279 286 0 0 chr1 90120021 90120098 -152544255 - MER103 DNA DNA -81 85 9 549 239 105 74 chr1 90120125 90120410 -152543943 - L2 LINE L2 0 3313 3020 1994 197 63 20 chr1 90121097 90121604 -152542749 - MER45B DNA AcHobo -1 1039 511 1499 235 47 0 chr1 90121598 90121939 -152542414 - MER45B DNA AcHobo -683 357 1 * 213 214 0 0 chr1 90123705 90123747 -152540606 + CT-rich Low_complexity Low_complexity 4 45 0 375 78 0 0 chr1 90128118 90128169 -152536184 + (CA)n Simple_repeat Simple_repeat 1 51 0 2058 132 3 0 chr1 90128196 90128485 -152535868 + AluSx SINE Alu 1 290 -22 21 57 0 0 chr1 90129432 90129467 -152534886 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 90130678 90130699 -152533654 + AT_rich Low_complexity Low_complexity 1 21 0 239 93 23 0 chr1 90131965 90132008 -152532345 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr1 90132113 90132134 -152532219 + AT_rich Low_complexity Low_complexity 1 21 0 305 367 72 42 chr1 90133482 90133853 -152530500 - L2 LINE L2 -249 3023 2645 582 230 251 48 chr1 90134075 90134405 -152529948 - LTR16A1 LTR ERVL -3 454 58 705 318 74 18 chr1 90134758 90135345 -152529008 - MERVL LTR ERVL -573 5191 4521 667 325 59 16 chr1 90135338 90135762 -152528591 - MERVL LTR ERVL -2730 2755 2314 * 380 250 12 0 chr1 90135945 90136025 -152528328 - MER81 DNA DNA 0 114 34 2192 128 0 3 chr1 90136347 90136652 -152527701 + AluSx SINE Alu 1 304 -8 207 204 0 0 chr1 90137230 90137279 -152527074 + (CA)n Simple_repeat Simple_repeat 1 49 0 194 150 25 0 chr1 90137508 90137548 -152526805 + GA-rich Low_complexity Low_complexity 1 41 0 2216 117 3 0 chr1 90137696 90137995 -152526358 - AluSx SINE Alu -12 300 1 2140 111 0 0 chr1 90137998 90138295 -152526058 - AluSg1 SINE Alu -8 301 5 996 123 0 0 chr1 90138304 90138434 -152525919 - AluSq/x SINE Alu -183 130 1 239 286 48 29 chr1 90139936 90140041 -152524312 + MIR3 SINE MIR 87 193 -15 337 242 121 40 chr1 90140786 90140910 -152523443 + MIR SINE MIR 46 179 -83 21 0 0 0 chr1 90140932 90140953 -152523400 + AT_rich Low_complexity Low_complexity 1 21 0 223 186 0 0 chr1 90141260 90141303 -152523050 - L2 LINE L2 -8 3305 3263 223 288 38 50 chr1 90142316 90142396 -152521957 + MIR SINE MIR 37 115 -147 832 304 50 12 chr1 90142466 90142804 -152521549 + LTR16C LTR ERVL 85 435 -56 250 254 0 0 chr1 90142804 90142859 -152521494 + Tigger5 DNA MER2_type 1 55 -2268 532 157 0 0 chr1 90142864 90142953 -152521400 + Tigger5 DNA MER2_type 2231 2319 -4 354 208 96 56 chr1 90143010 90143135 -152521218 + MIR SINE MIR 120 249 -13 1861 152 9 3 chr1 90144512 90144828 -152519525 + MLT1A1 LTR MaLR 48 365 0 424 333 56 19 chr1 90145490 90145652 -152518701 + L2 LINE L2 3104 3271 -1 781 271 47 24 chr1 90147082 90147337 -152517016 - MIR SINE MIR 0 262 2 265 255 21 21 chr1 90147705 90147799 -152516554 + LTR16A1 LTR ERVL 135 228 -229 598 165 123 29 chr1 90147872 90148042 -152516311 + LTR16A1 LTR ERVL 263 448 -9 730 198 198 0 chr1 90148192 90148379 -152515974 + MER58A DNA MER1_type 1 224 0 1230 241 34 34 chr1 90148548 90149080 -152515273 - MLT1E LTR MaLR 0 593 1 1354 353 70 29 chr1 90149093 90150199 -152514154 + HERV16 LTR ERVL 336 1487 -3509 1450 319 92 6 chr1 90150261 90150904 -152513449 + HERV16 LTR ERVL 1612 2309 -2687 2352 92 0 19 chr1 90151846 90152161 -152512192 - AluSc SINE Alu 0 309 1 195 333 48 0 chr1 90152468 90152552 -152511801 - MIR SINE MIR -72 190 103 422 263 168 6 chr1 90152650 90152829 -152511524 + MIR SINE MIR 49 256 -6 217 315 14 27 chr1 90154095 90154168 -152510185 + MIR3 SINE MIR 85 156 -52 1456 143 128 57 chr1 90154773 90155109 -152509244 - MER46B DNA MER2_type -1 235 1 186 253 56 59 chr1 90155553 90155661 -152508692 - MIR SINE MIR -62 146 83 306 273 105 28 chr1 90156410 90156828 -152507525 + L1ME LINE L1 5436 5891 -237 1881 157 3 26 chr1 90157031 90157343 -152507010 - AluJo SINE Alu -7 305 1 1413 170 11 19 chr1 90157558 90157823 -152506530 - L1MC1 LINE L1 0 6333 6071 7203 214 73 78 chr1 90157829 90158842 -152505511 - L1MCa LINE L1 -750 5676 4660 1920 172 13 0 chr1 90158842 90159144 -152505209 + AluJo SINE Alu 1 306 -6 7203 214 73 78 chr1 90159144 90160006 -152504347 - L1MCa LINE L1 -1766 4660 3795 1248 144 0 0 chr1 90160006 90160180 -152504173 - AluSg/x SINE Alu -5 305 132 1535 118 0 31 chr1 90160180 90160408 -152503945 - AluY SINE Alu -7 304 84 7203 214 73 78 chr1 90160408 90161290 -152503063 - L1MCa LINE L1 -2629 3797 2758 1929 163 38 88 chr1 90161298 90161778 -152502575 - LTR54 LTR ERV1 -33 477 20 2096 96 4 0 chr1 90161778 90162098 -152502255 - AluSc SINE Alu 0 321 1 1929 163 38 88 chr1 90162098 90162118 -152502235 - LTR54 LTR ERV1 -490 20 1 1658 213 133 11 chr1 90162151 90162587 -152501766 - MER57-int LTR ERV1 -414 7123 6635 746 216 19 62 chr1 90162680 90162896 -152501457 - L1MCa LINE L1 -3655 2771 2566 756 218 0 0 chr1 90162896 90163029 -152501324 - FLAM_C SINE Alu 0 133 1 746 216 19 62 chr1 90163029 90163071 -152501282 - L1MCa LINE L1 -3860 2566 2524 2041 134 0 3 chr1 90163084 90163389 -152500964 + AluSx SINE Alu 5 308 -4 1289 169 19 5 chr1 90163435 90163648 -152500705 - AluJo SINE Alu -15 297 82 3446 134 56 12 chr1 90163648 90164374 -152499979 - L1MCa LINE L1 -4051 2375 1530 364 250 0 0 chr1 90164374 90164458 -152499895 - Tigger3(Golem) DNA MER2_type -2944 85 2 23 0 0 0 chr1 90164854 90164877 -152499476 + AT_rich Low_complexity Low_complexity 1 23 0 465 265 96 6 chr1 90165000 90165166 -152499187 + MIR SINE MIR 13 193 -69 1998 123 0 27 chr1 90165307 90165599 -152498754 + AluSx SINE Alu 1 284 -28 234 184 41 82 chr1 90165624 90165722 -152498631 - MER103 DNA DNA -2 164 71 40 37 0 0 chr1 90166081 90166135 -152498218 + AT_rich Low_complexity Low_complexity 1 54 0 269 270 0 0 chr1 90166137 90166200 -152498153 + (CATA)n Simple_repeat Simple_repeat 3 65 0 186 286 116 18 chr1 90166342 90166454 -152497899 - L2 LINE L2 -2 3311 3189 1806 188 28 6 chr1 90166662 90167019 -152497334 + MLT1A1 LTR MaLR 1 365 0 202 286 16 0 chr1 90167050 90167113 -152497240 - L2 LINE L2 -299 2973 2910 891 269 59 34 chr1 90167143 90167500 -152496853 - LTR16C LTR ERVL -27 464 99 2026 106 43 7 chr1 90167629 90167930 -152496423 + AluSx SINE Alu 1 312 0 590 321 112 19 chr1 90167954 90168222 -152496131 - L2 LINE L2 -424 2890 2598 1144 261 137 0 chr1 90168230 90168602 -152495751 + L2 LINE L2 1920 2342 -972 735 259 97 36 chr1 90168609 90168825 -152495528 - L2 LINE L2 -718 2596 2358 2236 128 0 0 chr1 90168825 90169137 -152495216 - AluSx SINE Alu 0 312 1 735 259 97 36 chr1 90169137 90169198 -152495155 - L2 LINE L2 -956 2358 2302 1047 276 80 38 chr1 90169514 90169681 -152494672 + L2 LINE L2 2709 2868 -445 2422 55 14 3 chr1 90169681 90169974 -152494379 - AluY SINE Alu -15 296 1 1047 276 80 38 chr1 90169974 90170389 -152493964 + L2 LINE L2 2868 3313 0 566 239 136 7 chr1 90170753 90170908 -152493445 + MER5B DNA MER1_type 1 175 -3 2030 136 33 0 chr1 90170944 90171246 -152493107 + AluSx SINE Alu 1 312 0 246 299 0 0 chr1 90172023 90172090 -152492263 + L2 LINE L2 3247 3313 0 531 224 61 24 chr1 90172184 90172349 -152492004 + LTR16A1 LTR ERVL 287 457 0 306 205 36 0 chr1 90172354 90172466 -152491887 + (TATATG)n Simple_repeat Simple_repeat 5 120 0 256 254 16 0 chr1 90172478 90172541 -152491812 + MER112 DNA MER1_type 6 69 -191 752 176 0 0 chr1 90172560 90172679 -152491674 + FLAM_C SINE Alu 1 119 -24 381 238 0 0 chr1 90172688 90172789 -152491564 + (CA)n Simple_repeat Simple_repeat 2 102 0 287 282 0 35 chr1 90172792 90172877 -152491476 - L2 LINE L2 0 3313 3232 297 198 26 69 chr1 90172952 90173068 -152491285 + MER112 DNA MER1_type 144 254 -6 332 306 52 8 chr1 90173863 90173997 -152490356 + MIR SINE MIR 117 256 -6 333 274 85 12 chr1 90174262 90174426 -152489927 + MARNA DNA Mariner 256 431 -155 647 244 19 6 chr1 90174829 90174989 -152489364 + MIR SINE MIR 101 262 0 264 59 0 0 chr1 90175329 90175363 -152488990 + (TAA)n Simple_repeat Simple_repeat 2 35 0 183 300 83 0 chr1 90175637 90175697 -152488656 - L2 LINE L2 -10 3303 3239 1571 129 117 4 chr1 90175878 90176142 -152488211 + AluSg SINE Alu 1 294 -16 232 179 45 0 chr1 90177133 90177200 -152487153 + GA-rich Low_complexity Low_complexity 2 71 0 224 367 0 10 chr1 90177546 90177644 -152486709 - MIR3 SINE MIR -14 194 98 1887 89 0 4 chr1 90177904 90178152 -152486201 - AluSx SINE Alu -65 247 1 353 43 0 0 chr1 90178162 90178208 -152486145 + MADE1 DNA Mariner 35 80 0 * 1499 193 40 71 chr1 90178208 90178516 -152485837 - MLT1C LTR MaLR -7 460 171 2412 94 0 0 chr1 90178516 90178815 -152485538 + AluSg SINE Alu 1 299 -11 1499 193 40 71 chr1 90178815 90178981 -152485372 - MLT1C LTR MaLR -296 171 1 254 253 48 12 chr1 90179292 90179375 -152484978 + MER5A DNA MER1_type 9 94 -95 845 221 0 12 chr1 90179678 90179841 -152484512 - FRAM SINE Alu -14 162 2 2348 75 0 3 chr1 90179858 90180150 -152484203 - AluSc SINE Alu -18 291 1 1570 260 93 32 chr1 90180632 90181189 -152483164 - MLT1E LTR MaLR -2 591 1 249 211 79 44 chr1 90181938 90182052 -152482301 + MER113 DNA MER1_type? 2 119 -402 920 232 54 31 chr1 90182406 90182630 -152481723 - MIR SINE MIR -21 241 13 312 27 0 0 chr1 90182690 90182727 -152481626 + (CA)n Simple_repeat Simple_repeat 1 37 0 1115 173 35 0 chr1 90185115 90185317 -152479036 + MER3 DNA MER1_type 1 209 0 24 67 0 0 chr1 90185562 90185607 -152478746 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr1 90185714 90185744 -152478609 + AT_rich Low_complexity Low_complexity 1 30 0 230 333 131 33 chr1 90187268 90187451 -152476902 - MIR SINE MIR -57 205 5 1563 245 77 40 chr1 90187730 90188302 -152476051 + MLT1E LTR MaLR 1 593 0 512 323 48 28 chr1 90188403 90188654 -152475699 + MIR SINE MIR 3 258 -4 25 90 0 0 chr1 90189624 90189691 -152474662 + AT_rich Low_complexity Low_complexity 1 67 0 30 45 0 0 chr1 90189841 90189885 -152474468 + AT_rich Low_complexity Low_complexity 1 44 0 2089 120 3 10 chr1 90190754 90191113 -152473240 + AluSx SINE Alu 1 312 0 1163 248 29 95 chr1 90191158 90191735 -152472618 - L2 LINE L2 -16 3297 2768 843 295 13 9 chr1 90192067 90192291 -152472062 - MIR SINE MIR -37 225 1 417 304 0 10 chr1 90192414 90192516 -152471837 - MER91B DNA MER1_type 0 190 90 253 214 18 0 chr1 90192534 90192590 -152471763 - MER91B DNA MER1_type -61 129 73 184 290 20 50 chr1 90193242 90193342 -152471011 - MIR SINE MIR -62 200 104 298 208 13 26 chr1 90193766 90193843 -152470510 - MIR SINE MIR -3 259 184 544 297 48 56 chr1 90194369 90194618 -152469735 - L2 LINE L2 -1 3271 3025 1049 71 24 6 chr1 90194951 90195120 -152469233 + (TTTC)n Simple_repeat Simple_repeat 3 174 0 180 176 0 0 chr1 90195457 90195491 -152468862 + T-rich Low_complexity Low_complexity 1 34 0 1682 78 5 14 chr1 90195500 90195717 -152468636 - AluSg SINE Alu -95 215 1 23 0 0 0 chr1 90195875 90195898 -152468455 + AT_rich Low_complexity Low_complexity 1 23 0 977 143 40 23 chr1 90196025 90196200 -152468153 + AluSg/x SINE Alu 127 304 -6 2280 135 0 3 chr1 90196944 90197256 -152467097 + AluSq SINE Alu 1 311 -2 234 128 0 0 chr1 90199760 90199799 -152464554 + (T)n Simple_repeat Simple_repeat 1 39 0 349 282 260 0 chr1 90201239 90201420 -152462933 - MIR SINE MIR -12 250 23 275 230 162 0 chr1 90202021 90202095 -152462258 + MIR SINE MIR 58 143 -65 274 274 74 42 chr1 90202963 90203058 -152461295 - MIR SINE MIR -68 140 43 529 250 88 26 chr1 90204080 90204308 -152460045 - MER112 DNA MER1_type 0 260 19 266 257 121 21 chr1 90204368 90204508 -152459845 + MIR SINE MIR 106 259 -3 496 326 80 25 chr1 90206587 90206826 -152457527 + MIR SINE MIR 6 257 -5 2109 107 24 0 chr1 90206826 90207117 -152457236 + AluSx SINE Alu 1 298 -14 237 333 177 14 chr1 90207157 90207298 -152457055 + MIR SINE MIR 49 212 -50 935 315 66 46 chr1 90208088 90208871 -152455482 - L2 LINE L2 -1 3312 2521 1796 173 24 35 chr1 90208889 90209258 -152455095 - MLT1A1 LTR MaLR 0 365 1 2286 87 0 23 chr1 90210427 90210737 -152453616 - AluSp SINE Alu -10 303 1 408 297 191 45 chr1 90211494 90212065 -152452288 + L2 LINE L2 2568 3304 -9 353 273 30 61 chr1 90212247 90212379 -152451974 - MIR3 SINE MIR -27 181 54 563 322 31 25 chr1 90212497 90212783 -152451570 + MLT1J LTR MaLR 147 434 -77 266 247 172 35 chr1 90213087 90213314 -152451039 + MER20B DNA MER1_type 40 297 -486 270 125 0 0 chr1 90214276 90214324 -152450029 + (CA)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr1 90214435 90214456 -152449897 + AT_rich Low_complexity Low_complexity 1 21 0 2016 133 0 0 chr1 90215258 90215593 -152448760 + AluSx SINE Alu 1 335 0 2239 122 0 0 chr1 90216320 90216623 -152447730 - AluSx SINE Alu -9 303 1 437 0 19 0 chr1 90216724 90216777 -152447576 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 1822 154 0 30 chr1 90216778 90217077 -152447276 - AluJb SINE Alu -12 300 11 394 329 52 0 chr1 90217553 90217702 -152446651 - MIR SINE MIR -63 145 33 237 289 35 53 chr1 90218207 90218321 -152446032 - L2 LINE L2 -2 3311 3200 2267 122 0 3 chr1 90218613 90218917 -152445436 - AluSg SINE Alu -7 303 1 1891 137 3 10 chr1 90219071 90219363 -152444990 + AluJb SINE Alu 1 290 -22 21 0 0 0 chr1 90219366 90219387 -152444966 + AT_rich Low_complexity Low_complexity 1 21 0 299 342 13 19 chr1 90219867 90220022 -152444331 + MIR SINE MIR 4 157 -105 350 212 0 0 chr1 90220022 90220088 -152444265 - MER2 DNA MER2_type 0 345 280 191 350 52 67 chr1 90220715 90220909 -152443444 + L2 LINE L2 2861 3051 -221 250 316 13 13 chr1 90220951 90221027 -152443326 - L2 LINE L2 -7 3306 3231 2418 74 0 3 chr1 90221044 90221355 -152442998 - AluY SINE Alu -1 310 1 1435 204 16 70 chr1 90221465 90221631 -152442722 - MLT1A1 LTR MaLR -2 363 189 2393 79 0 0 chr1 90221631 90221934 -152442419 - AluY SINE Alu -8 303 1 1435 204 16 70 chr1 90221934 90221997 -152442356 - MLT1A1 LTR MaLR -176 189 124 2243 106 0 0 chr1 90221997 90222290 -152442063 - AluSx SINE Alu -19 293 1 1435 204 16 70 chr1 90222290 90222442 -152441911 - MLT1A1 LTR MaLR -241 124 2 535 198 9 9 chr1 90223954 90224070 -152440283 + MER63 DNA MER1_type 668 783 -278 2071 123 7 0 chr1 90224102 90224395 -152439958 + AluSx SINE Alu 1 295 -17 888 106 13 73 chr1 90224800 90224951 -152439402 - FRAM SINE Alu -15 161 20 592 298 59 60 chr1 90224992 90225334 -152439019 - L1MC4a LINE L1 -1889 5919 5578 2461 62 0 19 chr1 90225334 90225641 -152438712 - AluY SINE Alu -10 301 1 1891 153 3 14 chr1 90225643 90225938 -152438415 - AluSg1 SINE Alu -17 292 1 592 298 59 60 chr1 90225938 90226206 -152438147 - L1MC4a LINE L1 -2231 5577 5307 472 344 54 40 chr1 90226267 90226694 -152437659 - L1MC4a LINE L1 -1326 4820 4388 2193 122 0 0 chr1 90227455 90227758 -152436595 + AluSx SINE Alu 1 303 -9 402 260 0 10 chr1 90228559 90228659 -152435694 + MLT1J LTR MaLR 35 133 -378 333 229 48 0 chr1 90229068 90229151 -152435202 - MIR SINE MIR -21 241 155 585 139 0 0 chr1 90229152 90229238 -152435115 - AluSg/x SINE Alu -15 294 209 515 237 158 0 chr1 90229251 90229390 -152434963 - MIR SINE MIR -101 161 1 2283 87 30 10 chr1 90230475 90230774 -152433579 - AluSg SINE Alu -5 305 1 255 368 30 8 chr1 90231086 90231219 -152433134 - MIR SINE MIR -126 136 1 354 246 76 108 chr1 90231753 90232030 -152432323 + L1ME4a LINE L1 5576 5843 -278 408 293 107 10 chr1 90232150 90232355 -152431998 + L1ME4a LINE L1 5897 6121 0 267 79 0 0 chr1 90236526 90236564 -152427789 + (TG)n Simple_repeat Simple_repeat 1 38 0 704 209 0 8 chr1 90236571 90236705 -152427648 - FLAM_A SINE Alu 0 133 1 24 0 0 0 chr1 90236872 90236896 -152427457 + AT_rich Low_complexity Low_complexity 1 24 0 1866 151 11 54 chr1 90238830 90239181 -152425172 - MER1B DNA MER1_type -1 336 1 1987 157 0 3 chr1 90239268 90239581 -152424772 + AluJb SINE Alu 1 312 0 3720 60 249 0 chr1 90240592 90241143 -152423210 - LTR12 LTR ERV1 0 688 1 1450 162 74 30 chr1 90241203 90241503 -152422850 - AluJb SINE Alu 0 312 1 181 367 92 0 chr1 90242184 90242293 -152422060 + L3 LINE CR1 600 718 -859 822 245 79 12 chr1 90242945 90243186 -152421167 - MIR SINE MIR 0 262 6 182 253 53 27 chr1 90243176 90243251 -152421102 + L2 LINE L2 3150 3226 -87 * 823 167 59 4 chr1 90243340 90243531 -152420822 - L1M3 LINE L1 -684 5484 5291 373 239 63 69 chr1 90244025 90244553 -152419800 + MER5A DNA MER1_type 10 167 -22 446 246 14 58 chr1 90244051 90244119 -152420234 - MER5B DNA MER1_type -31 147 86 1819 141 57 43 chr1 90244119 90244489 -152419864 - THE1C LTR MaLR 0 375 1 446 246 14 58 chr1 90244489 90244558 -152419795 - MER5B DNA MER1_type -92 86 16 224 355 0 0 chr1 90244726 90244788 -152419565 - MIR SINE MIR -106 102 41 1285 336 48 8 chr1 90245148 90245767 -152418586 + L2 LINE L2 2387 3029 -284 2037 151 0 3 chr1 90246718 90247016 -152417337 + AluSx SINE Alu 1 297 -15 402 219 0 73 chr1 90247460 90247583 -152416770 - MER103 DNA DNA -48 118 5 478 399 47 32 chr1 90248452 90248795 -152415558 + L2 LINE L2 2914 3261 -11 327 104 0 0 chr1 90249265 90249313 -152415040 + (CA)n Simple_repeat Simple_repeat 2 49 0 200 289 0 0 chr1 90249388 90249440 -152414913 + A-rich Low_complexity Low_complexity 2 53 0 240 86 0 0 chr1 90249532 90249567 -152414786 + (TG)n Simple_repeat Simple_repeat 1 35 0 206 0 69 0 chr1 90250347 90250376 -152413977 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1189 180 125 23 chr1 90250379 90250635 -152413718 - AluJo SINE Alu -30 282 1 23 33 0 0 chr1 90251031 90251061 -152413292 + AT_rich Low_complexity Low_complexity 1 30 0 687 157 23 69 chr1 90251512 90251729 -152412624 - L1MC5 LINE L1 -440 7521 7315 257 262 32 24 chr1 90251886 90252012 -152412341 - L1ME LINE L1 -367 5799 5673 310 268 31 10 chr1 90252188 90252285 -152412068 + Charlie7 DNA MER1_type 1 99 -2513 248 314 156 49 chr1 90252453 90252554 -152411799 + L2 LINE L2 2290 2379 -935 2098 138 0 28 chr1 90252554 90252873 -152411480 - AluSx SINE Alu -2 310 1 248 314 156 49 chr1 90252873 90253099 -152411254 + L2 LINE L2 2379 2652 -662 292 278 0 93 chr1 90253297 90253405 -152410948 - MIR SINE MIR -8 254 157 370 238 16 66 chr1 90253422 90253544 -152410809 + MIR SINE MIR 26 141 -121 588 86 49 0 chr1 90253574 90253679 -152410674 - AluSg/x SINE Alu 0 303 195 1421 103 0 10 chr1 90253732 90253927 -152410426 - AluY SINE Alu -118 193 1 519 291 0 7 chr1 90253947 90254088 -152410265 - MIR SINE MIR -105 157 18 412 271 64 78 chr1 90254821 90255039 -152409314 - MIR SINE MIR -21 241 27 285 297 33 22 chr1 90255027 90255118 -152409235 + MIR SINE MIR 24 115 -147 * 2032 162 0 0 chr1 90255355 90255657 -152408696 + AluJb SINE Alu 1 302 -10 2096 174 5 11 chr1 90255750 90256117 -152408236 + MLT1A1 LTR MaLR 1 365 0 2147 107 4 0 chr1 90256741 90257022 -152407331 - AluSx SINE Alu -30 282 1 1682 163 0 0 chr1 90257046 90257322 -152407031 - L1PB4 LINE L1 -3 6153 5878 2262 115 0 0 chr1 90257382 90257678 -152406675 - AluSq SINE Alu -16 297 2 2182 134 3 3 chr1 90257680 90257986 -152406367 - AluSx SINE Alu -6 306 1 192 353 151 0 chr1 90259415 90259534 -152404819 - L2 LINE L2 -4 3309 3173 186 333 26 63 chr1 90259788 90259977 -152404376 - MIR SINE MIR -44 218 37 448 269 23 0 chr1 90260292 90260422 -152403931 - MER94 DNA DNA -1 133 1 1907 70 3 70 chr1 90260635 90260873 -152403480 - L1MA1 LINE L1 -3 6299 6047 2209 105 34 0 chr1 90260873 90261168 -152403185 - AluSg SINE Alu -5 305 1 2310 95 0 7 chr1 90261175 90261479 -152402874 - AluSg SINE Alu -8 302 1 1907 70 3 70 chr1 90261479 90261533 -152402820 - L1MA1 LINE L1 -261 6041 6019 1126 158 115 79 chr1 90261616 90261982 -152402371 + LTR48 LTR ERV1 73 451 -336 747 152 51 41 chr1 90262000 90262197 -152402156 + LTR48 LTR ERV1 589 787 0 442 357 35 25 chr1 90263517 90263716 -152400637 - L2 LINE L2 0 3272 3072 24 0 0 0 chr1 90265128 90265152 -152399201 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr1 90266451 90266480 -152397873 + AT_rich Low_complexity Low_complexity 1 29 0 1858 125 35 14 chr1 90266760 90267047 -152397306 + AluSg SINE Alu 1 293 -17 2281 92 3 25 chr1 90267173 90267489 -152396864 - AluSx SINE Alu -3 309 1 795 179 53 13 chr1 90267899 90268050 -152396303 + FAM SINE Alu 13 169 -16 453 244 204 12 chr1 90268083 90268255 -152396098 - L2 LINE L2 -3 3310 3106 2415 80 0 3 chr1 90268284 90268586 -152395767 + AluY SINE Alu 1 301 -10 1865 156 21 0 chr1 90269346 90269634 -152394719 - AluJb SINE Alu -18 294 1 231 125 25 0 chr1 90269667 90269707 -152394646 - Zaphod DNA AcHobo -13 4018 3978 404 169 0 0 chr1 90269832 90269903 -152394450 - MER115 DNA AcHobo -432 261 191 428 228 129 47 chr1 90270040 90270143 -152394210 - MER5A DNA MER1_type 0 189 63 2304 102 0 0 chr1 90270143 90270436 -152393917 - AluSx SINE Alu -19 293 1 428 228 129 47 chr1 90270436 90270502 -152393851 - MER5A DNA MER1_type -126 63 4 2553 46 0 10 chr1 90272135 90272439 -152391914 - AluY SINE Alu -10 301 1 21 0 0 0 chr1 90272621 90272642 -152391711 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 90272737 90272766 -152391587 + AT_rich Low_complexity Low_complexity 1 29 0 419 330 45 17 chr1 90272827 90273006 -152391347 + MIR SINE MIR 47 230 -32 202 150 25 0 chr1 90273537 90273577 -152390776 + A-rich Low_complexity Low_complexity 2 42 0 2283 114 0 3 chr1 90274195 90274502 -152389851 - AluSg SINE Alu -3 307 2 2234 97 6 28 chr1 90274613 90274932 -152389421 - AluSq SINE Alu -1 312 1 1574 197 38 17 chr1 90274934 90275224 -152389129 - AluJb SINE Alu -16 296 1 1902 82 60 11 chr1 90275302 90275597 -152388756 - AluY SINE Alu 0 308 1 2080 115 20 0 chr1 90275611 90275906 -152388447 - AluSp SINE Alu -12 301 1 188 338 62 25 chr1 90275926 90276006 -152388347 + MIR SINE MIR 41 123 -85 361 383 91 20 chr1 90276178 90276886 -152387467 + L2 LINE L2 2464 3308 -5 297 218 127 55 chr1 90278100 90278210 -152386143 + MIR SINE MIR 117 234 -28 21 0 0 0 chr1 90279325 90279346 -152385007 + AT_rich Low_complexity Low_complexity 1 21 0 296 136 23 0 chr1 90280723 90280767 -152383586 + (TG)n Simple_repeat Simple_repeat 2 46 0 2225 115 0 3 chr1 90281479 90281792 -152382561 + AluSx SINE Alu 1 312 0 14133 191 18 13 chr1 90281931 90282446 -152381907 - L1PB1 LINE L1 -3 6864 6353 2445 70 0 0 chr1 90282446 90282744 -152381609 - AluSg SINE Alu -12 298 1 14133 191 18 13 chr1 90282744 90287727 -152376626 - L1PB1 LINE L1 -514 6353 1360 2062 136 0 10 chr1 90288840 90289135 -152375218 + AluSx SINE Alu 1 292 -20 267 325 32 32 chr1 90289780 90289903 -152374450 - L3b LINE CR1 -70 1513 1391 2330 91 3 19 chr1 90290118 90290426 -152373927 - AluSp SINE Alu -10 303 1 312 315 0 0 chr1 90290485 90290574 -152373779 + L1MC4 LINE L1 6614 6702 -1340 369 204 22 51 chr1 90290577 90290714 -152373639 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 1167 58 7 0 chr1 90290760 90290899 -152373454 + AluSq/x SINE Alu 1 140 -172 252 98 0 49 chr1 90290899 90290960 -152373393 + Alu SINE Alu 247 305 0 403 221 39 78 chr1 90291388 90291542 -152372811 + Charlie8 DNA MER1_type 56 203 -2214 330 230 27 0 chr1 90292494 90292568 -152371785 - L2 LINE L2 0 3313 3238 209 355 0 32 chr1 90292619 90292712 -152371641 - L2 LINE L2 -180 3092 3003 758 225 75 16 chr1 90292896 90293083 -152371270 + MIR SINE MIR 39 236 -26 49 52 0 0 chr1 90293879 90293956 -152370397 + AT_rich Low_complexity Low_complexity 1 77 0 2200 122 0 10 chr1 90294172 90294475 -152369878 + AluSx SINE Alu 1 300 -12 347 317 42 77 chr1 90295016 90295105 -152369248 + L3 LINE CR1 78 169 -1408 2609 51 0 0 chr1 90295105 90295416 -152368937 + AluY SINE Alu 1 311 0 347 317 42 77 chr1 90295416 90295638 -152368715 + L3 LINE CR1 169 378 -1199 479 332 58 13 chr1 90295767 90295993 -152368360 + MIR SINE MIR 13 248 -14 184 292 195 0 chr1 90296131 90296244 -152368109 + L2 LINE L2 3136 3270 -2 * 1081 310 136 30 chr1 90296232 90296903 -152367450 + L3 LINE CR1 693 1434 -143 312 320 30 10 chr1 90300370 90300470 -152363883 - L2 LINE L2 -5 3267 3166 201 39 0 0 chr1 90301272 90301298 -152363055 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 189 0 0 0 chr1 90302057 90302078 -152362275 + (TTG)n Simple_repeat Simple_repeat 3 23 0 224 309 63 32 chr1 90303372 90303498 -152360855 - L2 LINE L2 -5 3308 3179 1876 110 70 15 chr1 90303670 90303964 -152360389 - AluSg1 SINE Alu 0 309 1 371 140 0 0 chr1 90304018 90304075 -152360278 - AluSc SINE Alu -138 161 105 1528 178 42 24 chr1 90304175 90304462 -152359891 + AluJo SINE Alu 3 294 -18 2215 96 33 7 chr1 90304468 90304769 -152359584 + AluSc SINE Alu 1 309 0 21 0 0 0 chr1 90304769 90304790 -152359563 + AT_rich Low_complexity Low_complexity 1 21 0 190 364 133 21 chr1 90304863 90305421 -152358932 - L2 LINE L2 -831 2483 1864 195 42 0 0 chr1 90306184 90306208 -152358145 + (TTG)n Simple_repeat Simple_repeat 1 24 0 218 171 0 0 chr1 90306655 90306690 -152357663 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 154 0 0 chr1 90307174 90307213 -152357140 + (TA)n Simple_repeat Simple_repeat 2 40 0 550 256 11 6 chr1 90307576 90307716 -152356637 - MER104 DNA Tc2 -1718 180 37 479 103 26 0 chr1 90307716 90307794 -152356559 - MADE1 DNA Mariner 0 80 1 550 256 11 6 chr1 90307794 90307829 -152356524 - MER104 DNA Tc2 -1861 37 4 22 0 0 0 chr1 90308112 90308134 -152356219 + AT_rich Low_complexity Low_complexity 1 22 0 644 161 19 68 chr1 90308807 90308885 -152355468 - Charlie1a DNA MER1_type -1306 1455 1388 2067 120 23 10 chr1 90308885 90309185 -152355168 + AluSx SINE Alu 6 309 -3 644 161 19 68 chr1 90309185 90309268 -152355085 - Charlie1a DNA MER1_type -1373 1388 1302 4633 192 20 54 chr1 90309268 90310392 -152353961 - Charlie1a DNA MER1_type -365 1090 5 440 291 50 16 chr1 90310996 90311178 -152353175 - MIR SINE MIR -55 207 20 2216 103 20 3 chr1 90311292 90311594 -152352759 - AluSx SINE Alu -5 307 1 25 0 0 0 chr1 90311607 90311632 -152352721 + AT_rich Low_complexity Low_complexity 1 25 0 212 324 118 0 chr1 90312061 90312163 -152352190 - MIR SINE MIR -11 251 138 359 293 110 18 chr1 90312201 90312365 -152351988 - MIR SINE MIR -82 180 2 2636 107 0 3 chr1 90312387 90312752 -152351601 - THE1B LTR MaLR 0 364 1 457 301 0 0 chr1 90312757 90312880 -152351473 + MER94 DNA DNA 9 131 -3 21 36 0 0 chr1 90313703 90313731 -152350622 + AT_rich Low_complexity Low_complexity 1 28 0 487 320 51 10 chr1 90314741 90314956 -152349397 + MIR SINE MIR 3 225 -37 409 250 139 50 chr1 90315373 90315553 -152348800 + MIR SINE MIR 13 208 -54 2163 72 0 0 chr1 90316582 90316845 -152347508 - AluSc SINE Alu -38 271 9 206 300 111 60 chr1 90318018 90318351 -152346002 - L3 LINE CR1 -288 1289 940 2008 104 47 7 chr1 90318708 90319007 -152345346 - AluSx SINE Alu -1 311 1 238 189 27 14 chr1 90319398 90319472 -152344881 + (TA)n Simple_repeat Simple_repeat 2 76 0 867 118 0 15 chr1 90319572 90319707 -152344646 - FLAM_C SINE Alu 0 133 1 865 146 0 15 chr1 90320009 90320146 -152344207 + AluJb SINE Alu 1 135 -177 2441 48 0 3 chr1 90320548 90320842 -152343511 + AluY SINE Alu 3 295 -16 2135 46 50 7 chr1 90322021 90322303 -152342050 - AluY SINE Alu -16 295 2 1638 110 30 4 chr1 90322456 90322524 -152341829 + AluSx SINE Alu 59 124 -188 237 33 0 0 chr1 90322524 90322554 -152341799 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 1638 110 30 4 chr1 90322554 90322722 -152341631 + AluSx SINE Alu 124 301 -11 304 267 47 0 chr1 90322847 90322933 -152341420 + L1MC4 LINE L1 6614 6703 -1339 * 310 294 0 22 chr1 90322859 90322951 -152341402 - L1MC4 LINE L1 -1339 6703 6614 250 181 14 14 chr1 90322951 90323023 -152341330 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 358 190 50 30 chr1 90323063 90323163 -152341190 - AluSg/x SINE Alu -18 282 181 304 267 47 0 chr1 90323285 90323371 -152340982 + L1MC4 LINE L1 6614 6703 -1339 341 300 0 0 chr1 90323385 90323475 -152340878 + L1MC4 LINE L1 6614 6703 -1339 2050 100 14 4 chr1 90323501 90323782 -152340571 - AluSx SINE Alu -28 284 1 21 71 0 0 chr1 90323784 90323826 -152340527 + AT_rich Low_complexity Low_complexity 1 42 0 318 26 0 0 chr1 90323878 90323917 -152340436 + (TG)n Simple_repeat Simple_repeat 2 40 0 209 184 0 0 chr1 90323918 90323956 -152340397 + GA-rich Low_complexity Low_complexity 2 39 0 295 320 90 41 chr1 90324064 90324186 -152340167 - MIR SINE MIR -62 146 19 2302 84 27 0 chr1 90324379 90324676 -152339677 + AluSc SINE Alu 3 307 -2 2286 111 0 0 chr1 90324841 90325148 -152339205 - AluSx SINE Alu -5 307 1 25 51 0 0 chr1 90325212 90325251 -152339102 + AT_rich Low_complexity Low_complexity 1 39 0 444 299 95 27 chr1 90325580 90325801 -152338552 + L2 LINE L2 3078 3313 0 280 156 0 0 chr1 90326161 90326206 -152338147 + L2 LINE L2 3268 3312 -1 2067 216 72 41 chr1 90326520 90326618 -152337735 + L1MC4 LINE L1 6457 6550 -1492 2129 123 0 3 chr1 90326618 90326926 -152337427 + AluSg1 SINE Alu 1 307 -2 2067 216 72 41 chr1 90326926 90327438 -152336915 + L1MC4 LINE L1 6550 7086 -956 1711 264 108 11 chr1 90327449 90328014 -152336339 + L1MC4 LINE L1 7280 7899 -143 1769 159 36 36 chr1 90328187 90328552 -152335801 + MLT1A1 LTR MaLR 1 365 0 889 181 124 10 chr1 90328710 90328903 -152335450 - AluJb SINE Alu -4 308 94 2375 101 19 27 chr1 90329301 90329668 -152334685 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr1 90329862 90329883 -152334470 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr1 90330330 90330358 -152333995 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 249 108 0 0 chr1 90330374 90330411 -152333942 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 405 305 92 0 chr1 90330441 90330582 -152333771 + MIR SINE MIR 49 202 -60 277 154 31 0 chr1 90330608 90330747 -152333606 + CT-rich Low_complexity Low_complexity 1 143 0 2385 88 3 3 chr1 90333420 90333728 -152330625 + AluSg SINE Alu 1 308 -2 2021 135 0 4 chr1 90333755 90334067 -152330286 + AluSg SINE Alu 2 312 0 1000 136 41 0 chr1 90334309 90334507 -152329846 + AluSg/x SINE Alu 106 310 0 417 327 108 48 chr1 90334528 90334838 -152329515 - MLT1K LTR MaLR -104 484 137 709 218 78 10 chr1 90334838 90335031 -152329322 + MER3 DNA MER1_type 2 207 -2 417 327 108 48 chr1 90335031 90335176 -152329177 - MLT1K LTR MaLR -451 137 2 189 206 0 0 chr1 90335638 90335672 -152328681 - L2 LINE L2 -80 3233 3200 397 232 173 46 chr1 90335735 90335939 -152328414 - L1ME4a LINE L1 -17 6104 5853 2199 115 0 0 chr1 90335939 90336227 -152328126 - AluSc SINE Alu -21 288 1 397 232 173 46 chr1 90336227 90336306 -152328047 - L1ME4a LINE L1 -268 5853 5785 435 269 9 9 chr1 90336399 90336507 -152327846 + L2 LINE L2 3200 3307 -6 314 282 51 0 chr1 90336535 90336652 -152327701 - L1ME4a LINE L1 -574 5547 5425 206 232 18 0 chr1 90337206 90337262 -152327091 + CT-rich Low_complexity Low_complexity 2 58 0 47 0 0 0 chr1 90337580 90337627 -152326726 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr1 90338844 90338875 -152325478 + AT_rich Low_complexity Low_complexity 1 31 0 2117 126 20 0 chr1 90338943 90339237 -152325116 + AluSx SINE Alu 1 300 -12 294 290 105 8 chr1 90340298 90340422 -152323931 - L2 LINE L2 0 3313 3178 2221 125 25 55 chr1 90341774 90342175 -152322178 - MLT1B LTR MaLR -1 389 1 1260 127 41 0 chr1 90342266 90342486 -152321867 + L1PA13 LINE L1 5930 6158 -5 2343 85 3 13 chr1 90342486 90342792 -152321561 + AluSp SINE Alu 1 303 -10 27 0 0 0 chr1 90342798 90342825 -152321528 + AT_rich Low_complexity Low_complexity 1 27 0 1233 221 19 4 chr1 90342849 90343107 -152321246 + MLT1C LTR MaLR 206 467 0 2114 119 3 7 chr1 90343242 90343536 -152320817 + AluSx SINE Alu 1 293 -19 2321 90 3 0 chr1 90343599 90343898 -152320455 + AluY SINE Alu 1 300 -11 236 268 0 0 chr1 90344177 90344248 -152320105 + (TTTA)n Simple_repeat Simple_repeat 1 71 0 2193 104 0 0 chr1 90344581 90344870 -152319483 - AluY SINE Alu -22 289 1 2034 109 160 21 chr1 90344922 90345297 -152319056 - MSTA LTR MaLR 0 428 2 180 0 0 0 chr1 90346855 90346875 -152317478 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 669 209 165 10 chr1 90346928 90347134 -152317219 + MIR SINE MIR 12 249 -13 25 0 0 0 chr1 90347354 90347379 -152316974 + AT_rich Low_complexity Low_complexity 1 25 0 289 302 38 9 chr1 90347532 90347638 -152316715 - MER20B DNA MER1_type -616 167 59 189 0 0 0 chr1 90348942 90348963 -152315390 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 30 27 0 0 chr1 90349557 90349594 -152314759 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr1 90350495 90350535 -152313818 + AT_rich Low_complexity Low_complexity 1 40 0 576 229 82 18 chr1 90351972 90352142 -152312211 - MIR SINE MIR -16 246 66 266 289 0 13 chr1 90353032 90353108 -152311245 + MIR SINE MIR 79 153 -109 196 180 320 0 chr1 90353115 90353165 -152311188 + MIR SINE MIR 90 155 -107 240 91 0 0 chr1 90353199 90353232 -152311121 + MER116 DNA Mariner 48 80 0 221 267 200 0 chr1 90353232 90353307 -152311046 + MIR SINE MIR 156 245 -17 21 57 0 0 chr1 90353997 90354032 -152310321 + AT_rich Low_complexity Low_complexity 1 35 0 2015 131 0 7 chr1 90354032 90354322 -152310031 - AluJb SINE Alu -24 288 1 21 0 0 0 chr1 90354482 90354503 -152309850 + AT_rich Low_complexity Low_complexity 1 21 0 360 318 0 0 chr1 90354559 90354647 -152309706 + (CATA)n Simple_repeat Simple_repeat 2 89 0 234 268 49 0 chr1 90354648 90354730 -152309623 - L1MC4 LINE L1 -1342 6700 6615 215 277 0 0 chr1 90354732 90354779 -152309574 + (TA)n Simple_repeat Simple_repeat 1 47 0 624 178 11 38 chr1 90354950 90355135 -152309218 + CT-rich Low_complexity Low_complexity 1 180 0 543 323 81 0 chr1 90355150 90355348 -152309005 + MIR SINE MIR 49 262 0 393 174 0 0 chr1 90355532 90355630 -152308723 + (TA)n Simple_repeat Simple_repeat 2 99 0 386 256 233 0 chr1 90356286 90356415 -152307938 + MER5A DNA MER1_type 30 188 -1 230 0 33 0 chr1 90356716 90356746 -152307607 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2946 109 9 2 chr1 90357705 90358136 -152306217 + MER57B LTR ERV1 1 434 0 373 354 88 12 chr1 90359150 90359390 -152304963 - L3 LINE CR1 -161 1416 1159 21 0 0 0 chr1 90362175 90362196 -152302157 + AT_rich Low_complexity Low_complexity 1 21 0 229 167 21 0 chr1 90363046 90363094 -152301259 + L1M1 LINE L1 5867 5915 -387 2414 79 13 0 chr1 90363169 90363474 -152300879 + AluY SINE Alu 1 309 -2 2026 144 0 13 chr1 90363701 90364000 -152300353 + AluSx SINE Alu 1 295 -17 2066 101 9 69 chr1 90364001 90364137 -152300216 + AluSg SINE Alu 1 144 -166 1848 112 66 0 chr1 90364137 90364423 -152299930 + AluSx SINE Alu 1 305 -7 2066 101 9 69 chr1 90364423 90364604 -152299749 + AluSg SINE Alu 144 299 -11 25 0 0 0 chr1 90365168 90365193 -152299160 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 90365993 90366015 -152298338 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 90366584 90366611 -152297742 + AT_rich Low_complexity Low_complexity 1 27 0 2410 96 3 0 chr1 90366944 90367256 -152297097 + AluSp SINE Alu 1 313 0 557 285 63 92 chr1 90367472 90367757 -152296596 - L1ME3A LINE L1 -230 5940 5648 818 226 108 0 chr1 90367757 90367952 -152296401 + MER20 DNA MER1_type 1 216 -3 557 285 63 92 chr1 90367952 90367985 -152296368 - L1ME3A LINE L1 -522 5648 5616 1686 172 57 7 chr1 90367985 90368282 -152296071 + AluJb SINE Alu 1 312 0 557 285 63 92 chr1 90368282 90368441 -152295912 - L1ME3A LINE L1 -554 5616 5481 1515 199 24 7 chr1 90368441 90368737 -152295616 - AluJo SINE Alu -11 301 1 557 285 63 92 chr1 90368737 90368875 -152295478 - L1ME3A LINE L1 -689 5481 5341 1823 168 10 0 chr1 90368876 90369168 -152295185 - AluJo SINE Alu -17 295 1 2127 109 7 14 chr1 90369194 90369488 -152294865 + AluSx SINE Alu 1 292 -20 297 315 27 7 chr1 90369557 90369706 -152294647 - L1ME3A LINE L1 -916 5230 5079 1102 273 104 45 chr1 90369713 90370248 -152294105 - L1ME3A LINE L1 -1111 5035 4533 2140 103 40 10 chr1 90370248 90370550 -152293803 - AluSx SINE Alu -1 311 1 2134 128 7 0 chr1 90370550 90370854 -152293499 - AluSg SINE Alu -3 307 1 1102 273 104 45 chr1 90370854 90370868 -152293485 - L1ME3A LINE L1 -1613 4533 4521 2336 80 3 3 chr1 90370868 90371167 -152293186 - AluSp SINE Alu -14 299 1 1102 273 104 45 chr1 90371167 90371706 -152292647 - L1ME3A LINE L1 -1625 4521 3880 437 334 74 27 chr1 90371940 90372278 -152292075 + L1MEd LINE L1 448 801 -5318 2340 96 0 0 chr1 90372361 90372662 -152291691 + AluSx SINE Alu 1 301 -11 2197 107 0 0 chr1 90372840 90373129 -152291224 + AluSx SINE Alu 1 289 -23 394 205 36 0 chr1 90373619 90373702 -152290651 + MLT1K LTR MaLR 503 588 0 2261 135 18 3 chr1 90374167 90374551 -152289802 + MLT1B LTR MaLR 1 390 0 382 312 19 25 chr1 90374829 90374986 -152289367 + MER5B DNA MER1_type 4 159 -19 206 303 157 0 chr1 90375859 90375948 -152288405 - L2 LINE L2 -9 3304 3202 2401 78 0 3 chr1 90376585 90376880 -152287473 - AluSc SINE Alu -15 294 1 202 158 26 0 chr1 90377068 90377106 -152287247 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 449 305 23 23 chr1 90377138 90377315 -152287038 + MIR SINE MIR 11 187 -75 1324 298 62 83 chr1 90377598 90377923 -152286430 - L3 LINE CR1 -489 1088 758 1727 164 32 0 chr1 90377923 90378203 -152286150 + AluJb SINE Alu 1 289 -23 1324 298 62 83 chr1 90378203 90378473 -152285880 - L3 LINE CR1 -819 758 510 2320 73 3 10 chr1 90378473 90378774 -152285579 + AluY SINE Alu 1 299 -12 1324 298 62 83 chr1 90378774 90378940 -152285413 - L3 LINE CR1 -1067 510 342 22 0 0 0 chr1 90378995 90379017 -152285336 + AT_rich Low_complexity Low_complexity 1 22 0 280 330 28 9 chr1 90379241 90379347 -152285006 + MIR SINE MIR 2 109 -153 654 244 144 22 chr1 90379514 90379785 -152284568 - L2 LINE L2 -5 3308 3005 23 68 0 0 chr1 90380645 90380689 -152283664 + AT_rich Low_complexity Low_complexity 1 44 0 387 319 31 31 chr1 90380836 90380996 -152283357 - MIR3 SINE MIR -7 201 42 235 109 18 109 chr1 90381059 90381114 -152283239 + MIR SINE MIR 132 181 -81 241 310 93 0 chr1 90381328 90381457 -152282896 + MIR SINE MIR 47 187 -75 271 304 134 0 chr1 90381519 90381631 -152282722 + L2 LINE L2 3142 3268 -4 1895 139 7 23 chr1 90383559 90383862 -152280491 - AluSx SINE Alu -14 298 1 215 236 69 0 chr1 90383862 90383934 -152280419 + T-rich Low_complexity Low_complexity 2 78 0 539 291 98 51 chr1 90384300 90384534 -152279819 - MIR SINE MIR 0 262 18 2230 130 0 0 chr1 90384878 90385179 -152279174 + AluSx SINE Alu 1 301 -11 1697 201 0 0 chr1 90385878 90386181 -152278172 + AluJo SINE Alu 1 303 -9 1611 173 14 0 chr1 90386269 90386553 -152277800 + AluJb SINE Alu 12 299 -13 1881 164 6 10 chr1 90386728 90387039 -152277314 + AluSx SINE Alu 1 310 -2 2393 98 11 22 chr1 90387308 90387667 -152276686 + THE1A LTR MaLR 1 355 0 2162 108 10 3 chr1 90387808 90388103 -152276250 + AluSx SINE Alu 1 297 -15 241 264 66 0 chr1 90388437 90388528 -152275825 - Charlie8 DNA MER1_type -1995 422 326 2310 149 65 2 chr1 90388643 90389040 -152275313 + MSTB LTR MaLR 5 426 0 389 217 12 171 chr1 90389082 90389155 -152275198 - Charlie8 DNA MER1_type -138 203 120 2226 100 0 7 chr1 90389155 90389446 -152274907 - AluSg SINE Alu -19 291 3 389 217 12 171 chr1 90389446 90389612 -152274741 - Charlie8 DNA MER1_type -221 120 2 211 197 183 14 chr1 90389662 90389733 -152274620 - L2 LINE L2 -107 3206 3124 1935 115 83 0 chr1 90389879 90390157 -152274196 + AluSc SINE Alu 2 302 -7 21 0 0 0 chr1 90390258 90390279 -152274074 + AT_rich Low_complexity Low_complexity 1 21 0 207 146 0 0 chr1 90390687 90390728 -152273625 + (CA)n Simple_repeat Simple_repeat 1 41 0 1110 193 4 13 chr1 90391299 90391527 -152272826 + AluJb SINE Alu 86 311 -1 25 0 0 0 chr1 90391600 90391625 -152272728 + AT_rich Low_complexity Low_complexity 1 25 0 207 100 0 0 chr1 90392879 90392909 -152271444 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 26 64 0 0 chr1 90392918 90392965 -152271388 + AT_rich Low_complexity Low_complexity 1 47 0 1476 198 51 3 chr1 90395543 90395836 -152268517 + AluJo SINE Alu 3 309 -3 2048 108 0 24 chr1 90396407 90396719 -152267634 - AluSg SINE Alu 0 306 2 22 35 0 0 chr1 90398826 90398855 -152265498 + AT_rich Low_complexity Low_complexity 1 29 0 360 88 0 0 chr1 90401825 90401882 -152262471 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2161 100 0 4 chr1 90401882 90402162 -152262191 - AluSc SINE Alu -30 279 1 2392 71 0 12 chr1 90402173 90402495 -152261858 - AluYb8 SINE Alu 0 318 1 348 233 0 23 chr1 90402503 90402589 -152261764 + L1M4 LINE L1 4899 4982 -1164 2241 113 0 3 chr1 90402589 90402891 -152261462 - AluSx SINE Alu -11 301 1 355 276 90 90 chr1 90404174 90404442 -152259911 - L1M2 LINE L1 -5870 979 712 25 0 0 0 chr1 90409338 90409363 -152254990 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr1 90413674 90413699 -152250654 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr1 90413856 90413897 -152250456 + AT_rich Low_complexity Low_complexity 1 41 0 29 0 0 0 chr1 90415790 90415819 -152248534 + AT_rich Low_complexity Low_complexity 1 29 0 723 210 90 31 chr1 90418354 90418566 -152245787 - L1PB4 LINE L1 -1 6155 5933 1338 169 55 41 chr1 90419273 90419563 -152244790 + AluJo SINE Alu 1 294 -18 23 0 0 0 chr1 90421357 90421380 -152242973 + AT_rich Low_complexity Low_complexity 1 23 0 225 213 33 33 chr1 90421551 90421612 -152242741 + L2 LINE L2 3250 3310 -3 182 300 60 0 chr1 90421793 90421843 -152242510 + L2 LINE L2 3209 3261 -11 180 0 0 0 chr1 90423419 90423439 -152240914 + (T)n Simple_repeat Simple_repeat 1 20 0 55 40 0 0 chr1 90423760 90423836 -152240517 + AT_rich Low_complexity Low_complexity 1 76 0 825 224 0 0 chr1 90423902 90424067 -152240286 - FRAM SINE Alu -6 170 6 576 195 19 6 chr1 90424681 90424840 -152239513 + CT-rich Low_complexity Low_complexity 2 162 0 205 227 23 0 chr1 90424854 90424898 -152239455 - L2 LINE L2 -10 3262 3218 257 313 17 70 chr1 90425110 90425225 -152239128 - L2 LINE L2 -252 3020 2912 22 0 0 0 chr1 90425248 90425270 -152239083 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1 90425323 90425357 -152238996 + AT_rich Low_complexity Low_complexity 1 34 0 1692 158 3 14 chr1 90425687 90425971 -152238382 - AluJo SINE Alu -31 281 1 387 41 0 0 chr1 90426344 90426393 -152237960 + (TC)n Simple_repeat Simple_repeat 1 49 0 1203 171 21 104 chr1 90426467 90426763 -152237590 + AluJo SINE Alu 1 269 -43 1965 116 18 11 chr1 90426763 90427048 -152237305 - AluSc SINE Alu -22 287 1 1203 171 21 104 chr1 90427048 90427078 -152237275 + AluJo SINE Alu 269 300 -12 1853 149 3 0 chr1 90428976 90429265 -152235088 - AluSx SINE Alu -22 290 1 737 278 10 5 chr1 90429487 90429685 -152234668 + MER58A DNA MER1_type 26 224 0 2159 108 0 0 chr1 90430308 90430596 -152233757 - AluSq SINE Alu -9 304 17 2264 81 3 0 chr1 90431909 90432207 -152232146 - AluSx SINE Alu -13 299 1 280 260 210 10 chr1 90433159 90433259 -152231094 + L2 LINE L2 3192 3311 -2 401 302 62 0 chr1 90433267 90433396 -152230957 + MIR SINE MIR 11 147 -115 2180 103 0 10 chr1 90433543 90433843 -152230510 - AluSg SINE Alu -13 297 1 183 80 0 0 chr1 90438927 90438952 -152225401 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 24 67 0 0 chr1 90439672 90439717 -152224636 + AT_rich Low_complexity Low_complexity 1 45 0 2265 147 13 5 chr1 90440787 90441169 -152223184 - L1PB1 LINE L1 -1 6150 5766 210 113 47 38 chr1 90441251 90441357 -152222996 + (TA)n Simple_repeat Simple_repeat 2 108 0 496 173 73 2 chr1 90441363 90441471 -152222882 - L1PB1 LINE L1 -361 5790 5678 203 363 11 0 chr1 90443011 90443102 -152221251 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 425 244 34 17 chr1 90443104 90443223 -152221130 + L2 LINE L2 3193 3313 0 362 219 21 42 chr1 90443409 90443505 -152220848 - MER5A DNA MER1_type -95 94 1 2086 136 0 0 chr1 90443752 90444054 -152220299 - AluSg SINE Alu -8 302 1 21 43 0 22 chr1 90444518 90444543 -152219810 + AT_rich Low_complexity Low_complexity 1 26 -19 2104 122 0 0 chr1 90444543 90444829 -152219524 - AluSg SINE Alu -24 286 1 21 43 0 22 chr1 90444829 90444849 -152219504 + AT_rich Low_complexity Low_complexity 26 45 0 25 51 0 0 chr1 90445500 90445539 -152218814 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr1 90446605 90446646 -152217707 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr1 90447400 90447423 -152216930 + AT_rich Low_complexity Low_complexity 1 23 0 518 255 163 0 chr1 90448629 90448770 -152215583 - MER5A DNA MER1_type -1 188 25 248 312 11 21 chr1 90449721 90449814 -152214539 - MIR3 SINE MIR -6 202 111 379 206 75 0 chr1 90452080 90452170 -152212183 + Charlie5 DNA MER1_type 1 88 -2524 21 57 0 0 chr1 90452942 90452977 -152211376 + AT_rich Low_complexity Low_complexity 1 35 0 309 51 0 0 chr1 90453132 90453171 -152211182 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr1 90453319 90453341 -152211012 + AT_rich Low_complexity Low_complexity 1 22 0 270 314 157 13 chr1 90455789 90455942 -152208411 + MIR SINE MIR 3 177 -85 276 282 19 39 chr1 90456450 90456553 -152207800 - MER102b DNA MER1_type -15 326 226 1860 171 0 7 chr1 90456554 90456859 -152207494 + AluJo SINE Alu 1 303 -9 198 167 0 0 chr1 90456924 90456960 -152207393 + CT-rich Low_complexity Low_complexity 2 37 0 481 258 66 20 chr1 90457037 90457188 -152207165 - MER102b DNA MER1_type -182 159 2 357 348 70 22 chr1 90458406 90458633 -152205720 - MIR SINE MIR 0 262 25 1901 153 0 3 chr1 90460804 90461105 -152203248 - AluJo SINE Alu -12 300 1 26 30 0 0 chr1 90461108 90461141 -152203212 + AT_rich Low_complexity Low_complexity 1 33 0 2004 104 8 4 chr1 90461341 90461619 -152202734 + AluSg SINE Alu 1 279 -31 226 0 0 0 chr1 90461619 90461644 -152202709 + (CAAAA)n Simple_repeat Simple_repeat 1 80 0 24 0 0 0 chr1 90461719 90461743 -152202610 + AT_rich Low_complexity Low_complexity 1 24 0 750 169 0 0 chr1 90461750 90461874 -152202479 - AluJb SINE Alu -188 124 1 2316 95 0 13 chr1 90462412 90462718 -152201635 - AluSq SINE Alu -11 302 1 1941 144 20 0 chr1 90463004 90463303 -152201050 + AluSx SINE Alu 1 305 -7 186 118 0 0 chr1 90463966 90464000 -152200353 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 21 0 0 0 chr1 90465894 90465915 -152198438 + AT_rich Low_complexity Low_complexity 1 21 0 1795 150 29 26 chr1 90466077 90466199 -152198154 + AluSx SINE Alu 1 121 -191 184 29 29 29 chr1 90466199 90466233 -152198120 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1795 150 29 26 chr1 90466233 90466416 -152197937 + AluSx SINE Alu 121 307 -5 357 341 43 12 chr1 90467328 90467492 -152196861 - MIR SINE MIR -85 177 9 442 278 180 51 chr1 90467558 90467892 -152196461 + L2 LINE L2 2937 3313 0 25 0 0 0 chr1 90467958 90467983 -152196370 + AT_rich Low_complexity Low_complexity 1 25 0 383 0 21 0 chr1 90469444 90469491 -152194862 + (TG)n Simple_repeat Simple_repeat 1 48 0 344 264 11 11 chr1 90469546 90469633 -152194720 - L2 LINE L2 -32 3281 3195 230 270 164 89 chr1 90469714 90470260 -152194093 + L2 LINE L2 2641 3237 -76 23 0 0 0 chr1 90471187 90471210 -152193143 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 90471553 90471574 -152192779 + AT_rich Low_complexity Low_complexity 1 21 0 7257 46 8 1 chr1 90472331 90473796 -152190557 - L1PA5 LINE L1 0 6154 4684 446 108 14 0 chr1 90475987 90476061 -152188292 + (TCTTG)n Simple_repeat Simple_repeat 3 77 0 1897 171 0 3 chr1 90476072 90476382 -152187971 - AluSx SINE Alu -3 309 1 21 36 0 0 chr1 90477675 90477703 -152186650 + AT_rich Low_complexity Low_complexity 1 28 0 199 333 32 57 chr1 90478029 90478152 -152186201 - MIR3 SINE MIR -51 157 38 471 277 143 45 chr1 90478624 90478848 -152185505 + MIR SINE MIR 7 252 -10 248 296 143 0 chr1 90480740 90480838 -152183515 + MIR3 SINE MIR 66 177 -31 1806 128 0 52 chr1 90481105 90481394 -152182959 + AluSx SINE Alu 1 274 -38 2239 156 92 28 chr1 90481784 90482251 -152182102 - MER61D LTR ERV1 0 501 5 2396 61 0 3 chr1 90482554 90482849 -152181504 - AluY SINE Alu -15 296 3 430 172 239 18 chr1 90484002 90484165 -152180188 + MER105 DNA DNA 4 202 -2 24 0 0 0 chr1 90484891 90484915 -152179438 + AT_rich Low_complexity Low_complexity 1 24 0 1393 199 62 4 chr1 90485370 90485646 -152178707 - AluJb SINE Alu -16 296 5 2037 107 4 7 chr1 90487565 90487845 -152176508 - AluSc SINE Alu -30 279 1 400 268 172 13 chr1 90488732 90488889 -152175464 - MER112 DNA MER1_type 0 260 79 6918 131 24 25 chr1 90489771 90489805 -152174548 + Tigger1 DNA MER2_type 24 57 -2361 2187 78 3 43 chr1 90489805 90490127 -152174226 - AluY SINE Alu -2 309 1 6918 131 24 25 chr1 90490127 90491253 -152173100 + Tigger1 DNA MER2_type 57 1183 -1235 21 57 0 0 chr1 90491698 90491733 -152172620 + AT_rich Low_complexity Low_complexity 1 35 0 284 237 26 18 chr1 90492531 90492645 -152171708 + (TTATA)n Simple_repeat Simple_repeat 4 118 0 294 29 0 0 chr1 90493335 90493370 -152170983 + (TG)n Simple_repeat Simple_repeat 1 35 0 396 323 30 12 chr1 90493446 90493613 -152170740 - MIR SINE MIR -58 204 35 422 254 95 0 chr1 90493981 90494107 -152170246 - MER58 DNA MER1_type -1 2419 2282 320 146 115 21 chr1 90494120 90494216 -152170137 - MER58 DNA MER1_type -2241 179 75 27 0 0 0 chr1 90494313 90494340 -152170013 + AT_rich Low_complexity Low_complexity 1 27 0 241 317 30 25 chr1 90494353 90494473 -152169880 - MIR SINE MIR -76 132 14 2302 76 20 7 chr1 90496769 90497070 -152167283 - AluSq SINE Alu -8 305 1 21 0 0 0 chr1 90497679 90497700 -152166653 + AT_rich Low_complexity Low_complexity 1 21 0 382 259 86 9 chr1 90498359 90498475 -152165878 + L2 LINE L2 3143 3267 -5 715 193 17 77 chr1 90499324 90499505 -152164848 + FRAM SINE Alu 1 167 -9 631 295 42 16 chr1 90501366 90501559 -152162794 + MIR SINE MIR 18 215 -47 333 253 78 54 chr1 90502096 90502262 -152162091 + L1M4 LINE L1 717 886 -5656 824 261 90 28 chr1 90502326 90502683 -152161670 + L1M4 LINE L1 894 1272 -5274 428 293 0 45 chr1 90502783 90502916 -152161437 - MER5A DNA MER1_type -45 144 18 25 31 0 0 chr1 90502937 90502969 -152161384 + AT_rich Low_complexity Low_complexity 1 32 0 2078 139 2 66 chr1 90503285 90503681 -152160672 - MER4B LTR ERV1 -47 563 193 1985 137 0 27 chr1 90503691 90503991 -152160362 + AluSx SINE Alu 1 292 -20 693 171 0 16 chr1 90504003 90504126 -152160227 - MER4D LTR ERV1 -694 209 89 249 239 0 60 chr1 90504468 90504535 -152159818 - MIR SINE MIR -61 147 85 457 300 56 56 chr1 90504798 90505048 -152159305 + MIR SINE MIR 10 259 -3 429 123 57 0 chr1 90505075 90505181 -152159172 + (TA)n Simple_repeat Simple_repeat 2 113 0 315 0 0 0 chr1 90505188 90505223 -152159130 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr1 90505305 90505342 -152159011 + AT_rich Low_complexity Low_complexity 1 37 0 673 217 34 11 chr1 90505772 90505947 -152158406 - MSTD LTR MaLR -2 394 216 1664 116 4 0 chr1 90506003 90506235 -152158118 + AluSg SINE Alu 1 233 -77 436 230 9 26 chr1 90506267 90506380 -152157973 - MSTD LTR MaLR -317 111 1 2072 106 3 7 chr1 90506475 90506767 -152157586 - AluSq SINE Alu -16 297 7 22 35 0 0 chr1 90507220 90507249 -152157104 + AT_rich Low_complexity Low_complexity 1 29 0 360 0 0 0 chr1 90507323 90507363 -152156990 + (TG)n Simple_repeat Simple_repeat 2 41 0 1304 203 59 7 chr1 90508995 90509266 -152155087 - L1MC1 LINE L1 -6 6327 6043 1260 195 13 119 chr1 90509269 90509654 -152154699 + MER7A DNA MER2_type 4 345 -1 2591 172 75 31 chr1 90509654 90510240 -152154113 - L1MC1 LINE L1 -290 6043 5351 2119 145 0 3 chr1 90510240 90510550 -152153803 - AluSx SINE Alu -3 309 1 2591 172 75 31 chr1 90510550 90510717 -152153636 - L1MC1 LINE L1 -982 5351 5193 2061 117 3 0 chr1 90511333 90511650 -152152703 + AluSx SINE Alu 2 319 0 2048 144 0 0 chr1 90513434 90513746 -152150607 - AluSx SINE Alu 0 312 1 181 326 12 35 chr1 90514951 90515037 -152149316 - MIR3 SINE MIR -8 200 117 23 0 0 0 chr1 90515322 90515345 -152149008 + AT_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr1 90515363 90515392 -152148961 + (CA)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr1 90515615 90515638 -152148715 + AT_rich Low_complexity Low_complexity 1 23 0 1409 147 82 18 chr1 90516474 90516753 -152147600 - AluJb SINE Alu -15 297 1 31 26 0 0 chr1 90518081 90518119 -152146234 + AT_rich Low_complexity Low_complexity 1 38 0 627 200 23 8 chr1 90518373 90518503 -152145850 - FLAM_C SINE Alu 0 133 2 3479 239 83 37 chr1 90519231 90520389 -152143964 + MER69B DNA AcHobo 15 1225 -1 25 31 0 0 chr1 90521333 90521365 -152142988 + AT_rich Low_complexity Low_complexity 1 32 0 674 269 77 50 chr1 90521757 90522173 -152142180 + LTR16A LTR ERVL 17 443 -7 726 183 0 0 chr1 90524108 90524245 -152140108 + FLAM_C SINE Alu 1 137 -6 224 237 17 0 chr1 90524282 90524341 -152140012 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 23 54 0 0 chr1 90528738 90528775 -152135578 + AT_rich Low_complexity Low_complexity 1 37 0 22 94 0 0 chr1 90528820 90528884 -152135469 + AT_rich Low_complexity Low_complexity 1 64 0 465 328 92 18 chr1 90531213 90531442 -152132911 - MIR SINE MIR -5 257 12 2005 119 0 52 chr1 90532224 90532551 -152131802 + AluSx SINE Alu 1 310 -2 1177 153 0 48 chr1 90533105 90533314 -152131039 - AluJb SINE Alu -113 199 1 565 239 15 85 chr1 90533941 90534065 -152130288 - MER5A DNA MER1_type -2 187 81 2270 74 6 26 chr1 90534065 90534376 -152129977 - AluSp SINE Alu -8 305 1 565 239 15 85 chr1 90534376 90534452 -152129901 - MER5A DNA MER1_type -108 81 1 23 54 0 0 chr1 90535363 90535400 -152128953 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr1 90535844 90535877 -152128476 + AT_rich Low_complexity Low_complexity 1 33 0 188 299 23 23 chr1 90537454 90537541 -152126812 - MIR SINE MIR -26 236 150 26 50 0 0 chr1 90541337 90541377 -152122976 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr1 90542588 90542630 -152121723 + AT_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr1 90547243 90547264 -152117089 + (TC)n Simple_repeat Simple_repeat 2 22 0 658 225 35 47 chr1 90548834 90549003 -152115350 + MIR SINE MIR 85 251 -11 21 36 0 0 chr1 90549052 90549080 -152115273 + AT_rich Low_complexity Low_complexity 1 28 0 2200 106 0 0 chr1 90549311 90549613 -152114740 + AluSc SINE Alu 1 302 -7 21 36 0 0 chr1 90549623 90549651 -152114702 + AT_rich Low_complexity Low_complexity 1 28 0 36 70 0 0 chr1 90558402 90558473 -152105880 + AT_rich Low_complexity Low_complexity 1 71 0 22 0 0 0 chr1 90558551 90558573 -152105780 + AT_rich Low_complexity Low_complexity 1 22 0 1862 140 0 33 chr1 90558794 90559101 -152105252 + AluJb SINE Alu 2 298 -14 902 93 23 8 chr1 90559260 90559389 -152104964 + AluSg SINE Alu 1 131 -179 1724 112 16 4 chr1 90559393 90559644 -152104709 + AluSq SINE Alu 40 293 -20 21 57 0 0 chr1 90559954 90559989 -152104364 + AT_rich Low_complexity Low_complexity 1 35 0 1216 248 48 44 chr1 90560013 90560449 -152103904 - L1ME1 LINE L1 -11 6155 5718 1169 185 68 23 chr1 90560460 90560877 -152103476 - L1ME1 LINE L1 -578 5586 5149 452 225 164 68 chr1 90560887 90561178 -152103175 - L1MC5 LINE L1 -102 7859 7597 2160 117 3 0 chr1 90561178 90561476 -152102877 - AluSq SINE Alu -14 299 1 452 225 164 68 chr1 90561476 90561696 -152102657 - L1MC5 LINE L1 -364 7597 7299 226 314 29 9 chr1 90561722 90561827 -152102526 - L1MC4a LINE L1 -458 7350 7244 2137 125 7 0 chr1 90561844 90562149 -152102204 - AluSx SINE Alu -5 307 1 439 249 20 109 chr1 90562206 90562407 -152101946 - MLT1I LTR MaLR -23 386 204 236 301 75 0 chr1 90562583 90562676 -152101677 - L1MC4 LINE L1 -16 8026 7927 2230 116 0 7 chr1 90562877 90563187 -152101166 - AluSq SINE Alu -5 308 1 293 333 130 9 chr1 90563438 90563669 -152100684 - L1ME LINE L1 -527 5642 5381 274 276 42 83 chr1 90563751 90564116 -152100237 - L1ME LINE L1 -872 5274 4924 721 277 116 44 chr1 90564234 90564870 -152099483 - L1ME LINE L1 -1426 4720 4039 303 267 53 80 chr1 90565286 90565436 -152098917 - L1ME LINE L1 -2661 3485 3340 1141 214 9 5 chr1 90566559 90566774 -152097579 - MER58A DNA MER1_type 0 224 9 2471 57 0 0 chr1 90568641 90568938 -152095415 - AluY SINE Alu -14 297 1 24 0 0 0 chr1 90573431 90573455 -152090898 + AT_rich Low_complexity Low_complexity 1 24 0 1715 180 0 3 chr1 90574007 90574302 -152090051 + AluJo SINE Alu 3 296 -16 21 0 0 0 chr1 90575313 90575334 -152089019 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 90576263 90576293 -152088060 + AT_rich Low_complexity Low_complexity 1 30 0 239 306 139 19 chr1 90579555 90579663 -152084690 + L2 LINE L2 3147 3267 -5 224 205 39 77 chr1 90580742 90580820 -152083533 - MIR SINE MIR -50 212 138 21 0 0 0 chr1 90582409 90582430 -152081923 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 90583464 90583492 -152080861 + AT_rich Low_complexity Low_complexity 1 28 0 244 250 88 38 chr1 90586291 90586371 -152077982 + L2 LINE L2 3183 3266 -6 30 27 0 0 chr1 90589002 90589039 -152075314 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr1 90590876 90590906 -152073447 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr1 90593556 90593590 -152070763 + AT_rich Low_complexity Low_complexity 1 34 0 452 18 18 0 chr1 90594409 90594466 -152069887 + (TA)n Simple_repeat Simple_repeat 2 59 0 818 81 0 0 chr1 90594467 90594578 -152069775 - AluSg/x SINE Alu 0 309 199 183 42 0 0 chr1 90595268 90595292 -152069061 + (TAA)n Simple_repeat Simple_repeat 1 24 0 549 184 0 0 chr1 90595301 90595399 -152068954 - AluJ/FLAM SINE Alu -213 99 2 923 101 8 0 chr1 90596530 90596659 -152067694 + AluSq/x SINE Alu 3 132 -180 1928 142 7 0 chr1 90596661 90596963 -152067390 + AluSx SINE Alu 1 304 -8 429 280 160 15 chr1 90598081 90598281 -152066072 - MIR SINE MIR -24 238 10 2033 106 7 27 chr1 90598812 90599113 -152065240 - AluSx SINE Alu -17 295 1 208 292 222 11 chr1 90599395 90599580 -152064773 - MIR SINE MIR -37 225 2 270 78 0 39 chr1 90599996 90600047 -152064306 + LTR66 LTR ERVL 391 439 -171 216 219 0 0 chr1 90600056 90600097 -152064256 + (TA)n Simple_repeat Simple_repeat 2 42 0 332 164 0 135 chr1 90600097 90600201 -152064152 - L1MC4 LINE L1 -1339 6703 6614 301 268 0 0 chr1 90600206 90600288 -152064065 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 336 267 23 0 chr1 90600290 90600376 -152063977 - L1MC4 LINE L1 -1340 6702 6615 446 231 0 6 chr1 90600378 90600538 -152063815 + (TA)n Simple_repeat Simple_repeat 2 160 0 1508 172 64 0 chr1 90601181 90601293 -152063060 + AluJo SINE Alu 1 104 -208 192 97 0 0 chr1 90601293 90601324 -152063029 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1508 172 64 0 chr1 90601324 90601478 -152062875 + AluJo SINE Alu 104 284 -28 192 265 72 48 chr1 90601651 90601734 -152062619 + MIR SINE MIR 42 126 -82 21 36 0 0 chr1 90602033 90602061 -152062292 + AT_rich Low_complexity Low_complexity 1 28 0 537 211 68 7 chr1 90602689 90602836 -152061517 + MIR SINE MIR 90 245 -17 209 277 0 0 chr1 90603193 90603240 -152061113 + CT-rich Low_complexity Low_complexity 5 51 0 234 289 167 22 chr1 90603293 90603383 -152060970 - L2 LINE L2 -1 3312 3210 534 308 14 57 chr1 90603397 90603608 -152060745 - MIR SINE MIR -2 260 59 2173 102 0 3 chr1 90603733 90604028 -152060325 + AluSc SINE Alu 1 294 -15 255 363 37 53 chr1 90604051 90604296 -152060057 - L2 LINE L2 -221 3051 2811 30 27 0 0 chr1 90604432 90604469 -152059884 + AT_rich Low_complexity Low_complexity 1 37 0 919 272 35 60 chr1 90604543 90604911 -152059442 - L1ME3A LINE L1 -48 6122 5764 325 347 0 0 chr1 90604924 90605022 -152059331 - MIR SINE MIR -108 154 57 479 315 9 42 chr1 90605314 90605527 -152058826 - MIR SINE MIR -43 219 14 365 328 57 45 chr1 90605538 90605782 -152058571 - L2 LINE L2 -204 3109 2863 1504 226 29 52 chr1 90607990 90608019 -152056334 - MLT2D LTR ERVL -12 402 374 366 23 0 0 chr1 90608019 90608062 -152056291 + (TG)n Simple_repeat Simple_repeat 2 44 0 1504 226 29 52 chr1 90608062 90608116 -152056237 - MLT2D LTR ERVL -40 374 320 2101 121 0 13 chr1 90608116 90608429 -152055924 + AluSx SINE Alu 1 309 -3 1504 226 29 52 chr1 90608429 90608752 -152055601 - MLT2D LTR ERVL -94 320 4 1043 58 30 34 chr1 90609424 90609710 -152054643 + (TTTC)n Simple_repeat Simple_repeat 1 465 0 1723 129 7 18 chr1 90609713 90609993 -152054360 - AluSx SINE Alu -6 306 30 311 308 19 39 chr1 90610241 90610397 -152053956 + L2 LINE L2 3161 3313 0 313 235 85 52 chr1 90610401 90610479 -152053874 + L1MEd LINE L1 2 76 -6043 2783 10 0 0 chr1 90610479 90610785 -152053568 + AluY SINE Alu 1 306 -5 313 235 85 52 chr1 90610785 90610859 -152053494 + L1MEd LINE L1 76 159 -5960 1991 134 3 3 chr1 90611513 90611812 -152052541 + AluSx SINE Alu 14 312 0 626 74 148 82 chr1 90611848 90611983 -152052370 + L1MB3 LINE L1 6031 6174 -9 5753 120 10 10 chr1 90611983 90613249 -152051104 - L1PA15 LINE L1 0 6165 4908 839 118 0 7 chr1 90613249 90613385 -152050968 - L1 LINE L1 -1403 4743 4609 201 294 155 21 chr1 90614061 90614255 -152050098 + L3b LINE CR1 1108 1327 -256 199 200 15 62 chr1 90614683 90614748 -152049605 + MIR SINE MIR 163 224 -38 306 197 13 40 chr1 90614782 90614858 -152049495 + L1MC4 LINE L1 6626 6699 -1343 183 80 0 0 chr1 90614913 90614938 -152049415 + (TAA)n Simple_repeat Simple_repeat 2 26 0 279 260 27 0 chr1 90614978 90615051 -152049302 - MIR SINE MIR -85 177 103 372 261 34 25 chr1 90617230 90617349 -152047004 - MIR3 SINE MIR -7 201 82 228 239 15 15 chr1 90617830 90617897 -152046456 + MLT1I LTR MaLR 340 406 -3 24 0 0 0 chr1 90618631 90618655 -152045698 + AT_rich Low_complexity Low_complexity 1 24 0 187 288 0 0 chr1 90618677 90618736 -152045617 + MIR SINE MIR 178 236 -26 181 238 71 48 chr1 90618859 90618943 -152045410 - MIR SINE MIR -118 144 59 236 200 0 67 chr1 90619075 90619180 -152045173 + A-rich Low_complexity Low_complexity 2 99 0 252 311 10 19 chr1 90619665 90619768 -152044585 + CT-rich Low_complexity Low_complexity 1 102 0 242 163 0 23 chr1 90620994 90621037 -152043316 - L2 LINE L2 -8 3305 3264 290 281 21 21 chr1 90621385 90621481 -152042872 - L2 LINE L2 -4 3268 3173 338 235 20 20 chr1 90671750 90671848 -151992505 + L1ME3 LINE L1 5787 5884 -280 378 196 23 81 chr1 90671888 90672072 -151992281 + L1ME3 LINE L1 5994 6165 -1 546 244 0 8 chr1 90673871 90673994 -151990359 - FRAM SINE Alu -6 170 49 302 258 41 107 chr1 90674003 90674186 -151990167 + MIR SINE MIR 3 172 -36 284 253 51 13 chr1 90674258 90674337 -151990016 + MER58A DNA MER1_type 1 82 -25 1980 196 7 5 chr1 90674438 90674841 -151989512 - L1 LINE L1 -1082 5064 4661 1531 164 178 0 chr1 90674842 90675146 -151989207 + MSTB LTR MaLR 69 426 0 952 253 109 42 chr1 90675368 90675917 -151988436 - LTR1B LTR ERV1 -75 751 119 407 183 32 0 chr1 90676627 90676720 -151987633 - MER5A DNA MER1_type -84 105 10 973 256 67 17 chr1 90677193 90677809 -151986544 + HsTC2a DNA Tc2 1 737 -5 408 374 49 0 chr1 90677951 90678114 -151986239 + MIR3 SINE MIR 15 185 -23 252 261 76 59 chr1 90678280 90678399 -151985954 - L3b LINE CR1 -268 1315 1195 310 234 64 64 chr1 90678783 90678924 -151985429 + LTR67 LTR ERVL 417 557 0 438 380 54 8 chr1 90679743 90679985 -151984368 + MIR SINE MIR 7 259 -3 27 49 0 0 chr1 90681302 90681343 -151983010 + AT_rich Low_complexity Low_complexity 1 41 0 2169 105 0 10 chr1 90681943 90682237 -151982116 - AluSx SINE Alu -21 291 1 358 328 25 8 chr1 90682246 90682368 -151981985 + MIR SINE MIR 6 129 -133 7304 231 14 8 chr1 90682496 90684658 -151979695 - L1 LINE L1 -2342 3804 1657 6965 16 0 0 chr1 90684654 90685453 -151978900 - L1PA2 LINE L1 -2 6153 5355 * 3136 128 32 4 chr1 90685453 90686009 -151978344 - L1PBa LINE L1 -4540 2323 1752 1938 164 55 10 chr1 90686169 90686613 -151977740 - MLT2B2 LTR ERVL -2 513 5 277 313 18 27 chr1 90686640 90686752 -151977601 - MIR SINE MIR -74 188 78 265 214 11 11 chr1 90687573 90687662 -151976691 + GA-rich Low_complexity Low_complexity 2 90 0 2540 58 0 10 chr1 90687922 90688235 -151976118 + AluY SINE Alu 1 310 -1 31 26 0 0 chr1 90688789 90688827 -151975526 + AT_rich Low_complexity Low_complexity 1 38 0 536 272 105 0 chr1 90689061 90689252 -151975101 + L1MA9 LINE L1 6064 6274 -38 289 307 89 49 chr1 90689519 90689744 -151974609 + L3 LINE CR1 185 418 -1159 963 281 86 90 chr1 90689762 90690341 -151974012 + L2 LINE L2 1311 1887 -1427 372 265 10 10 chr1 90690343 90690441 -151973912 - MER5B DNA MER1_type -78 100 3 303 385 8 16 chr1 90691210 90691332 -151973021 + MIR SINE MIR 20 140 -68 23 0 0 0 chr1 90692815 90692838 -151971515 + AT_rich Low_complexity Low_complexity 1 23 0 343 221 15 0 chr1 90692918 90692986 -151971367 - L2 LINE L2 0 3272 3204 452 268 80 22 chr1 90693616 90693754 -151970599 + MIR SINE MIR 45 190 -72 199 358 15 0 chr1 90693856 90693923 -151970430 - L2 LINE L2 -14 3299 3232 2264 118 0 10 chr1 90694085 90694398 -151969955 + AluSx SINE Alu 1 310 -2 249 300 17 0 chr1 90694455 90694515 -151969838 + MIR SINE MIR 6 66 -196 600 257 43 43 chr1 90694562 90694644 -151969709 + MIR SINE MIR 74 155 -107 1878 191 101 3 chr1 90694644 90695032 -151969321 + MSTB LTR MaLR 1 426 0 600 257 43 43 chr1 90695032 90695136 -151969217 + MIR SINE MIR 154 260 -2 276 170 0 0 chr1 90695170 90695223 -151969130 + (TG)n Simple_repeat Simple_repeat 2 54 0 355 309 87 16 chr1 90695832 90695958 -151968395 - L2 LINE L2 0 3272 3138 1545 59 0 10 chr1 90696406 90696608 -151967745 + L1PA5 LINE L1 5952 6151 -3 580 356 113 24 chr1 90696981 90697736 -151966617 - L2 LINE L2 -508 2806 1985 468 319 103 5 chr1 90697797 90697982 -151966371 - MIR SINE MIR -32 230 28 288 295 47 31 chr1 90698309 90698438 -151965915 - L2 LINE L2 -3 3269 3139 469 314 53 18 chr1 90698525 90698839 -151965514 + L2 LINE L2 2837 3220 -93 21 57 0 0 chr1 90700117 90700152 -151964201 + AT_rich Low_complexity Low_complexity 1 35 0 776 236 75 24 chr1 90700557 90700769 -151963584 + MER58A DNA MER1_type 1 223 -1 446 222 56 0 chr1 90700846 90700990 -151963363 + MER103 DNA DNA 9 160 -6 2741 144 130 84 chr1 90701688 90702256 -151962097 + Tigger4(Zombi) DNA MER2_type 2 595 -2136 310 210 210 49 chr1 90702584 90702727 -151961626 + L2 LINE L2 3148 3313 0 1471 230 21 6 chr1 90702845 90703176 -151961177 + MER58B DNA MER1_type 6 341 0 25 31 0 0 chr1 90703259 90703291 -151961062 + AT_rich Low_complexity Low_complexity 1 32 0 272 294 60 110 chr1 90704273 90704491 -151959862 - MLT1J LTR MaLR -145 334 95 306 98 0 0 chr1 90706621 90706672 -151957681 + (CA)n Simple_repeat Simple_repeat 2 52 0 25 83 0 0 chr1 90708153 90708213 -151956140 + AT_rich Low_complexity Low_complexity 1 60 0 303 292 41 103 chr1 90709585 90709780 -151954573 + MIR SINE MIR 20 202 -60 277 87 43 0 chr1 90709798 90709844 -151954509 - MADE1 DNA Mariner 0 80 33 619 316 147 11 chr1 90710224 90710572 -151953781 + L3b LINE CR1 1102 1496 -87 392 227 92 43 chr1 90711104 90711295 -151953058 + MLT1J2 LTR MaLR 254 489 -22 223 49 49 0 chr1 90711471 90711512 -151952841 + (TTA)n Simple_repeat Simple_repeat 3 45 0 36816 35 10 2 chr1 90711515 90717477 -151946876 - L1PA3 LINE L1 -20 6135 57 1592 238 23 9 chr1 90717763 90718112 -151946241 - MLT1A1 LTR MaLR -11 354 1 571 271 143 19 chr1 90718546 90718756 -151945597 + MIR SINE MIR 14 249 -13 548 278 82 9 chr1 90718794 90719008 -151945345 - MIR SINE MIR 0 262 35 21 57 0 0 chr1 90719058 90719093 -151945260 + AT_rich Low_complexity Low_complexity 1 35 0 393 293 39 82 chr1 90719756 90719964 -151944389 - MIR3 SINE MIR -2 206 8 397 303 129 0 chr1 90720044 90720176 -151944177 - MIR3 SINE MIR -15 193 45 527 340 52 26 chr1 90720221 90720417 -151943936 - MIR SINE MIR -13 249 45 1755 226 49 16 chr1 90720417 90720864 -151943489 - LTR40b LTR ERVL 0 462 1 527 340 52 26 chr1 90720864 90720899 -151943454 - MIR SINE MIR -217 45 12 355 289 54 27 chr1 90723275 90723424 -151940929 - MIR SINE MIR -19 243 91 490 222 164 6 chr1 90723819 90723990 -151940363 + MIR SINE MIR 64 261 -1 1721 103 56 38 chr1 90724153 90724391 -151939962 + L1MA5A LINE L1 5972 6219 -78 2784 91 3 3 chr1 90724391 90724764 -151939589 + THE1C LTR MaLR 1 373 -2 1721 103 56 38 chr1 90724764 90724845 -151939508 + L1MA5A LINE L1 6219 6297 0 219 36 0 0 chr1 90727029 90727057 -151937296 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 580 311 79 11 chr1 90727739 90727929 -151936424 + MIR SINE MIR 23 225 -37 396 288 67 22 chr1 90728045 90728312 -151936041 + L1ME4a LINE L1 5622 5900 -221 26 0 0 0 chr1 90728755 90728781 -151935572 + AT_rich Low_complexity Low_complexity 1 26 0 1734 185 7 0 chr1 90728781 90729079 -151935274 - AluJo SINE Alu -10 302 3 2310 81 6 38 chr1 90729982 90730302 -151934051 + AluSp SINE Alu 1 310 -3 27 0 0 0 chr1 90730478 90730505 -151933848 + AT_rich Low_complexity Low_complexity 1 27 0 323 266 62 23 chr1 90730603 90730780 -151933573 - L1ME LINE L1 -301 5820 5637 181 267 22 0 chr1 90730859 90730904 -151933449 - L2 LINE L2 -23 3290 3245 1412 260 35 158 chr1 90730918 90731039 -151933314 + L2 LINE L2 1870 2004 -1310 487 44 11 144 chr1 90731039 90731129 -151933224 + MADE1 DNA Mariner 3 80 0 1412 260 35 158 chr1 90731129 90732020 -151932333 + L2 LINE L2 2004 2745 -569 948 105 0 0 chr1 90732020 90732163 -151932190 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 1412 260 35 158 chr1 90732163 90732221 -151932132 + L2 LINE L2 2745 2809 -505 2415 286 112 49 chr1 90735825 90737079 -151927274 + L2 LINE L2 16 1347 -1967 699 306 20 5 chr1 90737155 90737351 -151927002 + MIR SINE MIR 64 262 0 1564 163 0 12 chr1 90737601 90737853 -151926500 + AluJb SINE Alu 54 302 -10 778 186 0 0 chr1 90737853 90737982 -151926371 + AluSx SINE Alu 1 129 -183 285 128 0 0 chr1 90737994 90738041 -151926312 + (TG)n Simple_repeat Simple_repeat 2 48 0 1140 141 0 0 chr1 90738043 90738232 -151926121 + AluSx SINE Alu 125 313 0 1884 163 47 16 chr1 90738562 90738925 -151925428 + THE1C LTR MaLR 2 375 0 388 274 25 45 chr1 90740205 90740362 -151923991 - MIR SINE MIR -2 260 107 2275 91 0 25 chr1 90740362 90740680 -151923673 + AluSg SINE Alu 1 310 0 514 231 8 8 chr1 90741145 90741262 -151923091 - MER94 DNA DNA 0 134 18 1043 246 109 44 chr1 90743888 90744184 -151920169 - L2 LINE L2 0 3313 3037 1905 133 0 51 chr1 90744184 90744548 -151919805 + AluSx SINE Alu 1 312 0 1043 246 109 44 chr1 90744548 90744909 -151919444 - L2 LINE L2 -276 3037 2630 434 260 24 39 chr1 90744919 90745046 -151919307 + MLT2D LTR ERVL 237 361 -53 482 0 17 0 chr1 90745076 90745134 -151919219 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 553 264 0 14 chr1 90745137 90745281 -151919072 - L2 LINE L2 -690 2624 2483 492 280 143 6 chr1 90745774 90745949 -151918404 - MIR SINE MIR -5 257 59 1145 208 26 30 chr1 90746015 90746279 -151918074 + MLT2D LTR ERVL 98 360 -54 308 24 24 0 chr1 90746304 90746345 -151918008 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 285 109 22 0 chr1 90746359 90746405 -151917948 + MLT2D LTR ERVL 351 397 0 622 229 0 0 chr1 90747595 90747717 -151916636 - FRAM SINE Alu -6 170 49 253 261 43 106 chr1 90747726 90747887 -151916466 + MIR3 SINE MIR 3 150 -69 1044 206 31 27 chr1 90747981 90748204 -151916149 + MER58A DNA MER1_type 1 224 0 1071 200 19 30 chr1 90748777 90749042 -151915311 + MIR SINE MIR 1 262 0 230 289 104 44 chr1 90749183 90749318 -151915035 - L2 LINE L2 -6 3307 3165 371 285 29 64 chr1 90749373 90749545 -151914808 - MIR SINE MIR -13 249 84 3948 152 12 49 chr1 90749838 90750011 -151914342 - L1MA7 LINE L1 -5 6286 6108 1478 191 42 17 chr1 90750011 90750299 -151914054 - AluJb SINE Alu -17 295 1 3948 152 12 49 chr1 90750299 90750934 -151913419 - L1MA7 LINE L1 -183 6108 5508 2265 116 0 0 chr1 90751022 90751316 -151913037 - AluSq SINE Alu -19 294 1 455 344 27 16 chr1 90751928 90752114 -151912239 + MER5A DNA MER1_type 1 188 -1 21 0 0 0 chr1 90752555 90752576 -151911777 + AT_rich Low_complexity Low_complexity 1 21 0 351 300 42 88 chr1 90752751 90752991 -151911362 - MIR SINE MIR -16 246 18 216 0 0 0 chr1 90753112 90753136 -151911217 + (T)n Simple_repeat Simple_repeat 1 24 0 1961 210 102 38 chr1 90753146 90753812 -151910541 + LTR1B LTR ERV1 1 751 -75 1536 164 178 0 chr1 90754034 90754338 -151910015 - MSTB LTR MaLR 0 426 69 3656 159 18 9 chr1 90754339 90755494 -151908859 + L1M2 LINE L1 4661 5824 -467 278 49 0 24 chr1 90756280 90756321 -151908032 + (TG)n Simple_repeat Simple_repeat 1 40 0 214 250 80 107 chr1 90757621 90757733 -151906620 + MIR3 SINE MIR 46 154 -54 21 57 0 0 chr1 90757749 90757784 -151906569 + AT_rich Low_complexity Low_complexity 1 35 0 326 306 102 8 chr1 90758623 90758858 -151905495 + MIR SINE MIR 5 261 -1 344 136 0 15 chr1 90759260 90759326 -151905027 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 192 202 48 12 chr1 90759307 90759391 -151904962 + CT-rich Low_complexity Low_complexity 3 89 0 * 29 0 0 0 chr1 90759548 90759577 -151904776 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 90761456 90761479 -151902874 + AT_rich Low_complexity Low_complexity 1 23 0 200 229 16 0 chr1 90761532 90761593 -151902760 + (TA)n Simple_repeat Simple_repeat 2 63 0 22 0 0 0 chr1 90761875 90761897 -151902456 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 90761957 90761987 -151902366 + AT_rich Low_complexity Low_complexity 1 30 0 1571 178 0 73 chr1 90761989 90762303 -151902050 - AluJb SINE Alu -21 291 1 393 327 10 0 chr1 90762395 90762496 -151901857 - L2 LINE L2 -18 3295 3194 363 23 0 0 chr1 90763237 90763281 -151901072 + (TG)n Simple_repeat Simple_repeat 2 45 0 1024 243 4 40 chr1 90763332 90763382 -151900971 - MER58A DNA MER1_type -2197 223 173 1406 90 90 0 chr1 90763382 90763593 -151900760 - MER30 DNA MER1_type 0 230 1 1024 243 4 40 chr1 90763593 90763768 -151900585 - MER58A DNA MER1_type -2247 173 6 1485 193 28 42 chr1 90764106 90764459 -151899894 - MLT1A1 LTR MaLR -17 348 1 268 85 128 21 chr1 90765287 90765334 -151899019 + MLT1C LTR MaLR 1 52 -415 515 278 166 9 chr1 90768584 90768807 -151895546 + MIR SINE MIR 3 260 -2 351 0 0 0 chr1 90769058 90769097 -151895256 + (TG)n Simple_repeat Simple_repeat 2 40 0 2072 117 0 0 chr1 90769099 90769373 -151894980 - AluSx SINE Alu -38 274 1 355 315 84 38 chr1 90769491 90769704 -151894649 + MIR SINE MIR 35 257 -5 416 296 61 10 chr1 90771183 90771383 -151892970 + MIR SINE MIR 38 252 -10 2204 299 305 16 chr1 90771551 90774133 -151890220 + L2 LINE L2 1 3313 0 317 271 23 39 chr1 90774696 90774825 -151889528 + L2 LINE L2 2211 2337 -977 306 366 101 16 chr1 90775271 90775528 -151888825 - L2 LINE L2 -466 2848 2570 1436 194 11 3 chr1 90775607 90775891 -151888462 - AluJo SINE Alu -4 308 23 492 346 126 22 chr1 90775933 90776514 -151887839 - L2 LINE L2 -924 2390 1750 344 285 43 0 chr1 90776549 90776673 -151887680 - MIR SINE MIR -65 143 10 235 341 0 0 chr1 90776854 90776942 -151887411 - L2 LINE L2 -817 2497 2410 676 307 49 4 chr1 90780661 90780886 -151883467 + MIR SINE MIR 25 259 -3 216 343 0 0 chr1 90781308 90781413 -151882940 + A-rich Low_complexity Low_complexity 1 105 0 236 288 73 73 chr1 90781459 90781636 -151882717 - MIR SINE MIR -14 248 72 182 368 69 11 chr1 90782073 90782160 -151882193 - L2 LINE L2 -38 3234 3143 22 80 0 0 chr1 90782178 90782228 -151882125 + AT_rich Low_complexity Low_complexity 1 50 0 597 246 0 11 chr1 90782561 90782746 -151881607 + L1MC/D LINE L1 5270 5451 -711 3877 253 15 22 chr1 90783005 90784145 -151880208 + L1MEc LINE L1 463 1594 -5231 1861 211 22 2 chr1 90784171 90784617 -151879736 - L1P5 LINE L1 -761 5385 4931 1713 111 0 19 chr1 90784617 90784879 -151879474 + L1P5 LINE L1 5393 5649 -507 590 243 149 36 chr1 90784919 90784931 -151879422 + L1MEc LINE L1 1501 1510 -5134 360 0 0 0 chr1 90784931 90784971 -151879382 + (CA)n Simple_repeat Simple_repeat 2 41 0 590 243 149 36 chr1 90784971 90785313 -151879040 + L1MEc LINE L1 1510 2000 -4644 2136 266 54 48 chr1 90785944 90787507 -151876846 + L1ME1 LINE L1 819 2616 -4506 276 271 35 28 chr1 90787521 90787665 -151876688 + L1ME1 LINE L1 2771 2915 -4207 1261 254 89 28 chr1 90787679 90788183 -151876170 + L1ME1 LINE L1 6422 6956 -5 976 227 61 0 chr1 90788476 90788721 -151875632 + MLT1J1 LTR MaLR 13 281 -169 2051 197 35 22 chr1 90790780 90791231 -151873122 + MSTB2 LTR MaLR 1 457 0 296 314 48 9 chr1 90791280 90791385 -151872968 + MIR3 SINE MIR 10 118 -90 187 237 34 17 chr1 90791500 90791559 -151872794 - MIR SINE MIR -150 112 53 925 202 13 61 chr1 90791948 90792176 -151872177 + MER20 DNA MER1_type 3 219 0 261 328 64 8 chr1 90792182 90792307 -151872046 - L2 LINE L2 -9 3304 3173 21 0 0 0 chr1 90797040 90797061 -151867292 + AT_rich Low_complexity Low_complexity 1 21 0 2177 100 0 0 chr1 90797632 90797973 -151866380 + AluSg SINE Alu 1 341 0 195 42 0 0 chr1 90798497 90798521 -151865832 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1971 143 0 29 chr1 90800243 90800557 -151863796 - AluSx SINE Alu -7 305 1 347 303 71 19 chr1 90800911 90801066 -151863287 - MIR SINE MIR -34 228 66 278 271 0 47 chr1 90802835 90802920 -151861433 + CT-rich Low_complexity Low_complexity 4 84 0 355 368 34 91 chr1 90803357 90803708 -151860645 + L2 LINE L2 2941 3271 -1 360 0 0 0 chr1 90803874 90803914 -151860439 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 601 63 0 0 chr1 90803914 90803993 -151860360 + LTR5 LTR ERVK 4 82 -887 697 45 0 0 chr1 90803994 90804082 -151860271 - HERVK LTR ERVK -1950 5293 5206 308 111 0 0 chr1 90804082 90804127 -151860226 - LTR5 LTR ERVK -924 45 1 191 35 0 35 chr1 90804127 90804156 -151860197 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1561 195 0 34 chr1 90804159 90804451 -151859902 - AluJo SINE Alu -30 282 1 223 318 0 34 chr1 90804509 90804597 -151859756 - MIR SINE MIR -72 190 106 1926 137 3 23 chr1 90805341 90805647 -151858706 - AluSx SINE Alu -10 302 3 613 94 85 9 chr1 90807115 90807221 -151857132 + L1PA5 LINE L1 6034 6147 -7 279 265 10 0 chr1 90809143 90809222 -151855131 - L1MC/D LINE L1 -525 5596 5539 264 236 127 18 chr1 90810941 90811051 -151853302 + MIR SINE MIR 66 187 -75 21 0 0 0 chr1 90811641 90811662 -151852691 + AT_rich Low_complexity Low_complexity 1 21 0 5959 149 27 9 chr1 90811669 90813382 -151850971 - L1MA6 LINE L1 -2 6298 4556 334 294 18 9 chr1 90814160 90814306 -151850047 + ALR/Alpha Satellite centromeric 1 147 -43 18769 159 17 23 chr1 90814391 90815506 -151848847 - L1PA10 LINE L1 -3 6480 5360 2149 107 16 10 chr1 90815506 90815814 -151848539 - AluSg SINE Alu 0 310 1 18769 159 17 23 chr1 90815814 90821213 -151843140 - L1PA10 LINE L1 -1123 5360 10 250 178 0 0 chr1 90821214 90821259 -151843094 - L1P LINE L1 -6099 47 3 520 340 45 10 chr1 90821422 90821622 -151842731 + MIR SINE MIR 8 214 -48 2340 192 55 81 chr1 90822595 90823308 -151841045 + LTR8A LTR ERV1 34 727 0 195 100 0 0 chr1 90825164 90825194 -151839159 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 432 286 24 0 chr1 90826095 90826243 -151838110 - MIR SINE MIR -12 250 99 300 53 0 0 chr1 90826458 90826496 -151837857 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 399 278 222 37 chr1 90826498 90826876 -151837477 - L2 LINE L2 -9 3304 2857 234 317 144 0 chr1 90827169 90827273 -151837080 - MIR SINE MIR -133 129 11 223 24 24 49 chr1 90827289 90827330 -151837023 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 529 219 39 16 chr1 90829576 90829704 -151834649 - MSTC LTR MaLR -297 131 1 * 659 285 36 32 chr1 90829704 90829923 -151834430 - MER69 DNA AcHobo -2306 220 1 246 143 20 0 chr1 90829934 90829983 -151834370 + HAL1 LINE L1 2124 2173 -334 298 268 10 21 chr1 90830017 90830114 -151834239 + HsTC2 DNA Tc2 39 134 -1764 1754 181 10 19 chr1 90830129 90830439 -151833914 + AluJb SINE Alu 1 307 -5 40779 33 25 1 chr1 90830651 90836650 -151827703 + L1PA3 LINE L1 3 6147 -8 976 245 79 8 chr1 90836653 90837045 -151827308 + HsTC2 DNA Tc2 1479 1898 0 342 227 85 14 chr1 90837045 90837186 -151827167 + HAL1 LINE L1 2181 2331 -176 740 140 0 0 chr1 90837186 90837300 -151827053 - MLT1B LTR MaLR 0 390 277 677 275 220 2 chr1 90837317 90837717 -151826636 - L2 LINE L2 -1631 1683 1197 309 313 104 31 chr1 90837745 90837937 -151826416 - L2 LINE L2 -818 2496 2291 7875 14 0 0 chr1 90838488 90839777 -151824576 + L1PA3 LINE L1 4864 6152 -3 30 0 0 0 chr1 90839777 90839807 -151824546 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 90840253 90840281 -151824072 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 90840335 90840356 -151823997 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr1 90840393 90840444 -151823909 + AT_rich Low_complexity Low_complexity 1 51 0 678 275 81 42 chr1 90841064 90841300 -151823053 + MIR SINE MIR 2 246 -16 2102 141 3 3 chr1 90841527 90841840 -151822513 - AluSp SINE Alu 0 313 1 470 333 28 99 chr1 90841994 90842365 -151821988 - L2 LINE L2 -1 3271 2933 2211 92 0 3 chr1 90842365 90842688 -151821665 + AluSq SINE Alu 1 322 0 470 333 28 99 chr1 90842688 90842747 -151821606 - L2 LINE L2 -339 2933 2871 * 484 305 38 54 chr1 90842741 90842980 -151821373 + MIR SINE MIR 11 245 -17 2334 126 22 0 chr1 90842985 90843343 -151821010 + MER47A DNA MER2_type 1 366 0 393 394 62 4 chr1 90843412 90843653 -151820700 - L2 LINE L2 -597 2717 2463 1993 111 3 3 chr1 90843995 90844292 -151820061 + L1PA13 LINE L1 5861 6157 -6 3494 120 27 12 chr1 90844540 90845058 -151819295 - MER1A DNA MER1_type -1 526 1 284 158 18 0 chr1 90845691 90845748 -151818605 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 839 158 0 0 chr1 90845880 90846019 -151818334 + AluSg/x SINE Alu 168 306 -4 1581 189 28 9 chr1 90846095 90846418 -151817935 - LTR26B LTR ERV1 0 531 203 2312 86 0 3 chr1 90846435 90846726 -151817627 - AluSc SINE Alu -19 290 1 203 310 14 42 chr1 90846727 90846798 -151817555 - MER5A DNA MER1_type -113 76 8 2154 106 7 0 chr1 90846866 90847168 -151817185 - AluSx SINE Alu 0 305 2 577 237 69 55 chr1 90847741 90847964 -151816389 + MIR SINE MIR 10 232 -30 1469 298 41 48 chr1 90848111 90849081 -151815272 - L1P3 LINE L1 -4985 2013 9 246 178 0 0 chr1 90849081 90849126 -151815227 - L1P LINE L1 -6099 47 3 523 340 45 10 chr1 90849289 90849489 -151814864 + MIR SINE MIR 8 214 -48 2298 194 56 80 chr1 90850462 90851173 -151813180 + LTR8A LTR ERV1 34 727 0 23 0 0 0 chr1 90851226 90851249 -151813104 + AT_rich Low_complexity Low_complexity 1 23 0 195 100 0 0 chr1 90853028 90853058 -151811295 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 432 286 24 0 chr1 90853961 90854109 -151810244 - MIR SINE MIR -12 250 99 285 29 0 0 chr1 90854324 90854358 -151809995 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 399 278 222 37 chr1 90854360 90854738 -151809615 - L2 LINE L2 -9 3304 2857 234 317 144 0 chr1 90855031 90855135 -151809218 - MIR SINE MIR -133 129 11 223 24 24 49 chr1 90855151 90855192 -151809161 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 188 381 27 0 chr1 90856323 90856408 -151807945 - MER5B DNA MER1_type -23 166 69 529 219 39 16 chr1 90857438 90857566 -151806787 - MSTC LTR MaLR -297 131 1 * 659 285 36 32 chr1 90857566 90857785 -151806568 - MER69 DNA AcHobo -2306 220 1 246 143 20 0 chr1 90857796 90857845 -151806508 + HAL1 LINE L1 2124 2173 -334 298 268 10 21 chr1 90857879 90857976 -151806377 + HsTC2 DNA Tc2 39 134 -1764 1754 181 10 19 chr1 90857991 90858301 -151806052 + AluJb SINE Alu 1 307 -5 40996 33 21 1 chr1 90858513 90864538 -151799815 + L1PA2 LINE L1 3 6152 -3 30 0 0 0 chr1 90864538 90864568 -151799785 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 90865014 90865042 -151799311 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 90865096 90865117 -151799236 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr1 90865154 90865205 -151799148 + AT_rich Low_complexity Low_complexity 1 51 0 678 275 81 42 chr1 90865826 90866062 -151798291 + MIR SINE MIR 2 246 -16 2102 141 3 3 chr1 90866289 90866602 -151797751 - AluSp SINE Alu 0 313 1 470 333 28 99 chr1 90866756 90867127 -151797226 - L2 LINE L2 -1 3271 2933 2199 95 0 3 chr1 90867127 90867455 -151796898 + AluSq SINE Alu 1 327 0 470 333 28 99 chr1 90867455 90867514 -151796839 - L2 LINE L2 -339 2933 2871 * 484 305 38 54 chr1 90867508 90867747 -151796606 + MIR SINE MIR 11 245 -17 2334 126 22 0 chr1 90867752 90868110 -151796243 + MER47A DNA MER2_type 1 366 0 365 403 62 4 chr1 90868179 90868420 -151795933 - L2 LINE L2 -597 2717 2463 1997 111 3 3 chr1 90868762 90869059 -151795294 + L1PA13 LINE L1 5861 6157 -6 3456 122 27 12 chr1 90869307 90869825 -151794528 - MER1A DNA MER1_type -1 526 1 284 158 18 0 chr1 90870454 90870511 -151793842 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1796 238 122 30 chr1 90870524 90871096 -151793257 - MLT1E2 LTR MaLR -1 625 1 186 378 60 0 chr1 90872837 90872988 -151791365 + MIR SINE MIR 102 261 -1 4208 138 40 3 chr1 90873908 90874590 -151789763 - MER39 LTR ERV1 0 707 1 317 344 20 33 chr1 90875542 90875693 -151788660 - MIR3 SINE MIR -6 202 54 2187 112 3 0 chr1 90876938 90877232 -151787121 + AluSx SINE Alu 3 297 -15 687 290 59 8 chr1 90877432 90877670 -151786683 + MIR SINE MIR 13 262 0 182 309 88 37 chr1 90878262 90878398 -151785955 + MIR SINE MIR 93 235 -27 418 221 164 0 chr1 90878645 90878767 -151785586 + LTR33 LTR ERVL 1 142 -379 256 202 22 45 chr1 90878932 90879021 -151785332 + LTR33 LTR ERVL 427 513 -8 2207 132 18 6 chr1 90879647 90880130 -151784223 + L1PA16 LINE L1 5595 6164 -2 2175 116 0 3 chr1 90880150 90880453 -151783900 + AluSx SINE Alu 1 302 -10 261 211 0 0 chr1 90881065 90881122 -151783231 + L1MC4 LINE L1 6653 6709 -1333 2190 84 35 0 chr1 90881421 90881706 -151782647 + AluSp SINE Alu 1 295 -18 23 0 0 0 chr1 90881706 90881729 -151782624 + AT_rich Low_complexity Low_complexity 1 23 0 234 188 0 43 chr1 90882154 90882223 -151782130 + A-rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr1 90884235 90884268 -151780085 + AT_rich Low_complexity Low_complexity 1 33 0 758 368 58 22 chr1 90884495 90885049 -151779304 + L2 LINE L2 2184 2757 -557 2025 110 11 0 chr1 90885305 90885587 -151778766 - AluSx SINE Alu -27 285 1 304 308 0 0 chr1 90885786 90885864 -151778489 + L2 LINE L2 3195 3272 0 2704 309 106 28 chr1 90886455 90887783 -151776570 + L2 LINE L2 1617 3074 -239 2560 116 6 0 chr1 90887783 90888145 -151776208 - THE1B LTR MaLR 0 364 1 2704 309 106 28 chr1 90888145 90888227 -151776126 + L2 LINE L2 3074 3148 -165 511 261 39 20 chr1 90888233 90888386 -151775967 - MIR SINE MIR -21 241 86 686 234 11 43 chr1 90888440 90888624 -151775729 + L2 LINE L2 3136 3313 0 395 370 74 16 chr1 90888910 90889167 -151775186 + L2 LINE L2 1752 2023 -1291 732 264 14 109 chr1 90890973 90891257 -151773096 + MLT1J2 LTR MaLR 4 260 -190 194 303 0 66 chr1 90891417 90891493 -151772860 - L3 LINE CR1 -912 665 595 642 221 0 0 chr1 90892765 90892887 -151771466 - FLAM_C SINE Alu -21 122 1 381 242 83 55 chr1 90894177 90894258 -151770095 + MIR SINE MIR 16 102 -128 1157 249 71 34 chr1 90894258 90894608 -151769745 - MLT1A1 LTR MaLR -2 363 1 381 242 83 55 chr1 90894608 90894677 -151769676 + MIR SINE MIR 102 168 -62 787 261 92 58 chr1 90896218 90896750 -151767603 + L1ME4a LINE L1 5502 6051 -70 426 250 10 10 chr1 90896832 90896936 -151767417 + L2 LINE L2 3210 3313 0 230 333 37 25 chr1 90897184 90897265 -151767088 - L2 LINE L2 0 3313 3232 1020 305 95 37 chr1 90897297 90897727 -151766626 + LTR67 LTR ERVL 22 476 -81 1152 331 176 8 chr1 90897787 90898748 -151765605 + L2 LINE L2 754 1875 -1439 981 292 108 10 chr1 90898748 90899361 -151764992 + L2 LINE L2 2633 3310 -3 225 0 0 0 chr1 90900227 90900252 -151764101 + (TG)n Simple_repeat Simple_repeat 2 26 0 1915 160 36 0 chr1 90900633 90900965 -151763388 - MER7A DNA MER2_type -4 342 1 504 343 131 11 chr1 90901070 90901603 -151762750 - MLT1L LTR MaLR -18 597 1 311 258 30 68 chr1 90901817 90901949 -151762404 + MIR SINE MIR 80 206 -56 208 309 12 0 chr1 90902444 90902525 -151761828 + (CA)n Simple_repeat Simple_repeat 1 82 0 349 355 13 33 chr1 90903184 90903336 -151761017 + L2 LINE L2 2550 2698 -616 2220 95 30 0 chr1 90903664 90903959 -151760394 - AluSx SINE Alu -8 304 1 1949 165 138 76 chr1 90903988 90904473 -151759880 + MLT2B2 LTR ERVL 1 515 0 241 299 126 11 chr1 90907832 90907919 -151756434 + MIR3 SINE MIR 87 183 -25 229 194 111 56 chr1 90907955 90908027 -151756326 + MIR SINE MIR 105 180 -82 180 179 0 0 chr1 90908073 90908112 -151756241 + (CAT)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr1 90908235 90908257 -151756096 + AT_rich Low_complexity Low_complexity 1 22 0 197 257 0 0 chr1 90908938 90908973 -151755380 - L2 LINE L2 -18 3254 3220 230 286 209 0 chr1 90908975 90909080 -151755273 - L2 LINE L2 0 3313 3187 1273 203 52 87 chr1 90909302 90909706 -151754647 - MLT1B LTR MaLR 0 390 1 350 297 112 67 chr1 90909832 90910384 -151753969 - L2 LINE L2 -557 2757 2181 408 20 0 0 chr1 90910974 90911023 -151753330 + (CA)n Simple_repeat Simple_repeat 2 50 0 244 278 0 128 chr1 90911139 90911272 -151753081 - L2 LINE L2 0 3313 3198 2423 176 33 15 chr1 90911298 90911816 -151752537 - L1MA9 LINE L1 -5 6307 5781 834 182 0 0 chr1 90911877 90912025 -151752328 - L1MA9 LINE L1 -519 5793 5646 2060 135 3 0 chr1 90913537 90913833 -151750520 - AluSx SINE Alu -15 297 1 245 269 0 0 chr1 90914424 90914476 -151749877 - L2 LINE L2 -4 3309 3258 836 275 36 29 chr1 90915450 90915726 -151748627 + LTR16A LTR ERVL 1 278 -172 861 264 117 44 chr1 90915744 90916267 -151748086 - L1MC4 LINE L1 -69 7973 7413 1925 195 26 29 chr1 90916574 90916989 -151747364 + MLT2D LTR ERVL 1 414 0 283 310 9 9 chr1 90916997 90917110 -151747243 - L1 LINE L1 -1146 5000 4888 2105 102 0 0 chr1 90917112 90917386 -151746967 + AluSg SINE Alu 25 298 -12 1670 237 156 16 chr1 90917798 90918413 -151745940 - L1ME2 LINE L1 -19 6145 5445 862 330 67 42 chr1 90918420 90919093 -151745260 - L1 LINE L1 -1442 4704 4015 205 104 0 42 chr1 90919174 90919222 -151745131 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 447 287 108 25 chr1 90919264 90919672 -151744681 - L1 LINE L1 -2180 3966 3525 2327 99 0 0 chr1 90919763 90920067 -151744286 - AluSx SINE Alu -8 304 1 22 35 0 0 chr1 90920209 90920238 -151744115 + AT_rich Low_complexity Low_complexity 1 29 0 748 309 72 68 chr1 90920245 90921135 -151743218 - L1 LINE L1 -2938 3208 2316 22 0 0 0 chr1 90921245 90921267 -151743086 + AT_rich Low_complexity Low_complexity 1 22 0 287 312 46 25 chr1 90921821 90922058 -151742295 - HAL1b LINE L1 -441 907 666 507 240 58 73 chr1 90922078 90922420 -151741933 - HAL1b LINE L1 -736 612 276 21 57 0 0 chr1 90922753 90922788 -151741565 + AT_rich Low_complexity Low_complexity 1 35 0 716 167 0 17 chr1 90923960 90924080 -151740273 - MER5A DNA MER1_type -71 118 1 1072 185 15 2 chr1 90925152 90925437 -151738916 - MER2 DNA MER2_type 0 345 1 236 200 156 0 chr1 90925504 90925594 -151738759 - L1ME3A LINE L1 -214 5956 5853 407 259 94 0 chr1 90925612 90925782 -151738571 - L1ME3A LINE L1 -602 5568 5383 * 853 251 126 43 chr1 90925775 90926218 -151738135 - L1ME3A LINE L1 -2647 3499 3094 1719 211 30 45 chr1 90926218 90926620 -151737733 + MSTD LTR MaLR 1 396 0 853 251 126 43 chr1 90926620 90927194 -151737159 - L1ME3A LINE L1 -3052 3094 2398 1701 194 20 38 chr1 90927474 90927866 -151736487 - MLT1B LTR MaLR -5 385 1 672 302 72 5 chr1 90928478 90928822 -151735531 + MLT1J2 LTR MaLR 73 439 -7 336 294 94 56 chr1 90929252 90929335 -151735018 - MIR SINE MIR -2 260 182 423 0 0 0 chr1 90929335 90929382 -151734971 + (TA)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr1 90929381 90929402 -151734951 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 336 294 94 56 chr1 90929382 90929404 -151734949 - MIR SINE MIR -80 182 162 1696 159 0 18 chr1 90929404 90929681 -151734672 - AluJo SINE Alu -38 274 3 336 294 94 56 chr1 90929681 90929754 -151734599 - MIR SINE MIR -100 162 95 1583 216 3 3 chr1 90929971 90930277 -151734076 - AluJo SINE Alu -6 306 1 24 32 0 0 chr1 90930816 90930847 -151733506 + AT_rich Low_complexity Low_complexity 1 31 0 181 333 143 33 chr1 90932337 90932547 -151731806 + MIR SINE MIR 14 246 -16 234 0 0 0 chr1 90932557 90932583 -151731770 + (GA)n Simple_repeat Simple_repeat 1 26 0 2434 43 0 46 chr1 90932625 90932951 -151731402 + AluY SINE Alu 1 311 0 236 54 54 0 chr1 90933923 90933960 -151730393 + A-rich Low_complexity Low_complexity 2 40 0 2080 134 0 0 chr1 90934712 90935004 -151729349 + AluSx SINE Alu 21 312 0 3064 157 27 85 chr1 90935209 90935942 -151728411 + LTR8 LTR ERV1 1 691 0 2372 86 0 10 chr1 90937132 90937434 -151726919 + AluSx SINE Alu 1 299 -13 1941 242 67 74 chr1 90938865 90939903 -151724450 - LTR27 LTR ERV1 -20 1735 3 419 285 66 13 chr1 90940096 90940247 -151724106 - MIR3 SINE MIR -3 205 47 336 320 60 52 chr1 90940281 90940474 -151723879 + MIR3 SINE MIR 1 202 -6 2092 125 30 3 chr1 90941350 90941645 -151722708 - AluSx SINE Alu -9 303 1 334 195 39 31 chr1 90943484 90943612 -151720741 + (TTATA)n Simple_repeat Simple_repeat 3 131 0 182 311 131 0 chr1 90943633 90943694 -151720659 - L2 LINE L2 -200 3072 3004 600 291 43 26 chr1 90945352 90945521 -151718832 + MIR SINE MIR 19 195 -67 2100 183 12 20 chr1 90945521 90945920 -151718433 + MSTD LTR MaLR 1 396 0 600 291 43 26 chr1 90945920 90945980 -151718373 + MIR SINE MIR 195 252 -10 355 316 36 36 chr1 90946078 90946217 -151718136 - MIR3 SINE MIR -62 146 8 261 98 0 0 chr1 90947409 90947450 -151716903 + (A)n Simple_repeat Simple_repeat 1 41 0 27 81 0 0 chr1 90947980 90948042 -151716311 + AT_rich Low_complexity Low_complexity 1 62 0 1920 142 0 24 chr1 90948646 90948942 -151715411 + AluSx SINE Alu 5 293 -19 288 233 54 93 chr1 90949163 90949292 -151715061 + L2 LINE L2 3189 3312 -1 202 332 83 36 chr1 90949432 90949625 -151714728 - L2 LINE L2 -544 2770 2569 2238 118 0 0 chr1 90950115 90950411 -151713942 + AluSx SINE Alu 1 296 -16 2703 88 0 3 chr1 90950520 90950895 -151713458 - MER9 LTR ERVK -137 374 1 3157 97 25 0 chr1 90952079 90952524 -151711829 + L1PA10 LINE L1 5698 6153 -15 3431 268 42 2 chr1 90952540 90953404 -151710949 - L1M4 LINE L1 -1286 4860 3932 210 37 0 0 chr1 90953404 90953431 -151710922 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3431 268 42 2 chr1 90953431 90953765 -151710588 - L1M4 LINE L1 -2214 3932 3613 675 130 0 19 chr1 90953866 90953965 -151710388 + AluSg/x SINE Alu 192 290 -19 1658 136 140 0 chr1 90953965 90954230 -151710123 - AluSx SINE Alu -10 302 1 219 319 0 14 chr1 90954388 90954457 -151709896 + L2 LINE L2 3246 3313 0 2317 99 0 3 chr1 90955581 90955883 -151708470 + AluSc SINE Alu 1 301 -8 553 307 32 5 chr1 90957057 90957246 -151707107 + MLT1I LTR MaLR 204 397 -12 1514 104 0 74 chr1 90958410 90958640 -151705713 + AluSg/x SINE Alu 83 295 -15 423 316 8 0 chr1 90960601 90960718 -151703635 + MIR3 SINE MIR 88 205 -3 646 280 75 0 chr1 90961517 90961703 -151702650 - MIR SINE MIR -2 260 61 2102 107 0 4 chr1 90961744 90962089 -151702264 + AluSg SINE Alu 1 344 0 874 260 22 5 chr1 90962146 90962369 -151701984 - MIR SINE MIR -16 246 20 2438 112 13 11 chr1 90962684 90963058 -151701295 - THE1C LTR MaLR 0 375 1 10431 111 24 20 chr1 90963058 90964633 -151699720 - THE1C-int LTR MaLR 0 1580 1 2439 112 30 8 chr1 90964635 90965000 -151699353 - THE1C LTR MaLR -2 373 1 1662 150 41 142 chr1 90965299 90965988 -151698365 + MER4A LTR ERV1 3 465 0 1044 289 167 44 chr1 90966332 90966432 -151697921 + L2 LINE L2 2070 2156 -1157 1686 176 10 10 chr1 90966432 90966728 -151697625 - AluJb SINE Alu -16 296 1 1044 289 167 44 chr1 90966728 90967157 -151697196 + L2 LINE L2 2156 2531 -782 1996 170 65 31 chr1 90967157 90967575 -151696778 - MSTB1 LTR MaLR 0 432 1 1044 289 167 44 chr1 90967575 90968064 -151696289 + L2 LINE L2 2531 3223 -90 1997 76 29 11 chr1 90968076 90968460 -151695893 - LTR7 LTR ERV1 -15 435 1 2452 109 5 13 chr1 90968460 90968853 -151695500 - HERVH LTR ERV1 0 7713 7324 1373 91 29 0 chr1 90968853 90969062 -151695291 - HERVH LTR ERV1 -1894 5819 5605 5851 122 12 1 chr1 90969068 90969987 -151694366 - HERVH LTR ERV1 -2564 5149 4221 1773 148 5 5 chr1 90969987 90970293 -151694060 - HERVH LTR ERV1 -3425 4288 3995 1459 155 4 4 chr1 90970303 90970548 -151693805 - HERVH LTR ERV1 -3977 3736 3492 800 136 79 0 chr1 90970538 90970678 -151693675 - HERVH LTR ERV1 -4423 3290 3140 * 8591 124 3 37 chr1 90970657 90972109 -151692244 - HERVH LTR ERV1 -4718 2995 1593 2667 150 35 63 chr1 90972216 90973363 -151690990 - HERVH LTR ERV1 -6503 1210 1 2564 86 134 2 chr1 90973365 90973761 -151690592 - LTR7 LTR ERV1 -2 448 1 406 273 109 0 chr1 90974459 90974569 -151689784 + MIR SINE MIR 68 189 -73 189 0 0 0 chr1 90974577 90974598 -151689755 + (TA)n Simple_repeat Simple_repeat 1 21 0 270 296 45 11 chr1 90974613 90974701 -151689652 + MIR SINE MIR 20 110 -152 296 257 28 22 chr1 90976705 90976810 -151687543 - MIR SINE MIR -37 171 62 246 213 88 25 chr1 90977567 90977647 -151686706 + LTR50 LTR ERVL 17 101 -694 862 339 60 10 chr1 90977824 90978237 -151686116 + ERVL LTR ERVL 4127 4560 -1204 882 189 0 13 chr1 90978365 90978518 -151685835 - Tigger3b DNA MER2_type 0 1231 1081 * 4703 145 48 22 chr1 90978511 90979380 -151684973 - Tigger3b DNA MER2_type -339 892 1 3804 274 45 26 chr1 90979383 90980891 -151683462 - ERVL LTR ERVL -429 5335 3767 2852 146 12 8 chr1 90981212 90981692 -151682661 + L1PA16 LINE L1 5685 6166 0 354 100 0 0 chr1 90981739 90981799 -151682554 + (GA)n Simple_repeat Simple_repeat 1 60 0 679 239 46 35 chr1 90981801 90982030 -151682323 + MLT1H1 LTR MaLR 299 570 -23 21 57 0 0 chr1 90982719 90982754 -151681599 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 90982785 90982822 -151681531 + AT_rich Low_complexity Low_complexity 1 37 0 313 241 52 12 chr1 90983319 90983438 -151680915 - L1ME LINE L1 -352 5817 5691 874 302 36 4 chr1 90984443 90984718 -151679635 - ERVL LTR ERVL -2306 3458 3175 362 302 67 13 chr1 90985399 90985548 -151678805 + L3 LINE CR1 1409 1565 -12 210 167 0 0 chr1 90985727 90985763 -151678590 + (TA)n Simple_repeat Simple_repeat 2 37 0 660 254 18 74 chr1 90986454 90986738 -151677615 - L1ME2 LINE L1 0 6164 5897 21 110 0 0 chr1 90987417 90987508 -151676845 + AT_rich Low_complexity Low_complexity 1 91 0 297 306 202 0 chr1 90987706 90987830 -151676523 + MIR SINE MIR 53 201 -61 333 0 0 0 chr1 90987862 90987899 -151676454 + (CAT)n Simple_repeat Simple_repeat 3 39 0 216 0 0 0 chr1 90988180 90988204 -151676149 + (TG)n Simple_repeat Simple_repeat 1 24 0 695 221 47 52 chr1 90990039 90990211 -151674142 - MER20 DNA MER1_type -48 171 1 207 100 0 0 chr1 90990501 90990531 -151673822 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 869 255 129 9 chr1 90992322 90992640 -151671713 - L1ME3A LINE L1 -14 6225 5870 779 290 113 7 chr1 90992657 90993055 -151671298 - L1ME3A LINE L1 -447 5792 5354 933 280 49 76 chr1 90993081 90994224 -151670129 - L1ME3A LINE L1 -883 5332 2320 365 241 128 92 chr1 90994230 90994558 -151669795 - L1ME3A LINE L1 -4058 2338 1999 524 307 118 34 chr1 90994708 90995525 -151668828 - L1ME3A LINE L1 -4634 1762 878 560 14 14 0 chr1 90995599 90995668 -151668685 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1629 192 6 3 chr1 90995981 90996304 -151668049 + L1MA4 LINE L1 5963 6286 -14 1445 246 47 29 chr1 90996457 90996704 -151667649 - Charlie4a DNA MER1_type -1455 506 265 1528 189 55 114 chr1 90996704 90996747 -151667606 - MLT2D LTR ERVL 0 414 370 222 37 0 0 chr1 90996747 90996774 -151667579 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 306 0 0 0 chr1 90996773 90996807 -151667546 + (GA)n Simple_repeat Simple_repeat 1 34 0 1528 189 55 114 chr1 90996774 90997098 -151667255 - MLT2D LTR ERVL -44 370 110 2107 111 0 7 chr1 90997098 90997404 -151666949 + AluSc SINE Alu 3 306 -3 1528 189 55 114 chr1 90997404 90997508 -151666845 - MLT2D LTR ERVL -304 110 1 1445 246 47 29 chr1 90997508 90997751 -151666602 - Charlie4a DNA MER1_type -1696 265 7 479 302 78 28 chr1 90997869 90998048 -151666305 - MIR SINE MIR -56 206 19 21 0 0 0 chr1 90998281 90998302 -151666051 + AT_rich Low_complexity Low_complexity 1 21 0 2133 126 0 0 chr1 90998313 90998614 -151665739 - AluSg SINE Alu -9 301 1 24 32 0 0 chr1 90999131 90999162 -151665191 + AT_rich Low_complexity Low_complexity 1 31 0 723 289 60 15 chr1 90999213 90999479 -151664874 - MLT1E2 LTR MaLR -146 480 203 375 177 0 0 chr1 90999602 90999664 -151664689 + L2 LINE L2 3211 3272 0 313 356 15 0 chr1 91000276 91000408 -151663945 - MER69A DNA AcHobo -43 134 1 272 89 0 22 chr1 91002081 91002126 -151662227 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1750 158 47 7 chr1 91002304 91002602 -151661751 + AluJo SINE Alu 1 310 -2 835 229 38 30 chr1 91002752 91002988 -151661365 - L1PB4 LINE L1 -7 6149 5912 6904 52 14 9 chr1 91004518 91005474 -151658879 + L1PA7 LINE L1 5190 6149 -5 335 320 46 81 chr1 91006905 91007102 -151657251 + MIR3 SINE MIR 14 203 -5 244 268 56 63 chr1 91007790 91007932 -151656421 + MER5B DNA MER1_type 2 142 -36 242 254 0 17 chr1 91008350 91008409 -151655944 + MIR SINE MIR 83 140 -68 261 269 67 52 chr1 91008467 91008601 -151655752 - MIR SINE MIR -3 259 124 2958 286 91 14 chr1 91008697 91010001 -151654352 + HAL1 LINE L1 116 1519 -988 834 237 0 21 chr1 91011189 91011375 -151652978 + MER5A DNA MER1_type 1 182 -7 265 276 0 0 chr1 91011625 91011683 -151652670 + MLT2B2 LTR ERVL 1 58 -457 3713 67 2 0 chr1 91012099 91012575 -151651778 - L1PA7 LINE L1 0 6154 5678 497 291 25 41 chr1 91014192 91014388 -151649965 + MIR SINE MIR 45 237 -25 228 278 99 85 chr1 91015560 91015772 -151648581 + MIR SINE MIR 45 259 -3 270 399 24 18 chr1 91015781 91015949 -151648404 + L2 LINE L2 3102 3270 -2 267 152 0 0 chr1 91016584 91016630 -151647723 + CT-rich Low_complexity Low_complexity 2 47 0 415 229 64 28 chr1 91016630 91016739 -151647614 - FLAM_A SINE Alu -20 113 1 2068 240 41 28 chr1 91016742 91017460 -151646893 - L1ME2 LINE L1 -256 6703 5979 1169 170 56 105 chr1 91017466 91017772 -151646581 + MLT2C1 LTR ERVL 2 292 -105 28 0 0 0 chr1 91017772 91017800 -151646553 + AT_rich Low_complexity Low_complexity 1 28 0 495 228 87 5 chr1 91017888 91018072 -151646281 - L1ME2 LINE L1 -1669 5272 5074 889 217 94 14 chr1 91018075 91018433 -151645920 - MLT1D LTR MaLR -7 498 22 297 109 0 0 chr1 91018433 91018488 -151645865 + (TG)n Simple_repeat Simple_repeat 2 56 0 889 217 94 14 chr1 91018488 91018512 -151645841 - MLT1D LTR MaLR -483 22 1 1284 280 89 46 chr1 91018541 91019797 -151644556 - L1ME2 LINE L1 -3943 3179 1677 363 239 8 98 chr1 91019933 91020110 -151644243 + L1 LINE L1 3106 3291 -2855 22 35 0 0 chr1 91020125 91020154 -151644199 + AT_rich Low_complexity Low_complexity 1 29 0 742 71 0 0 chr1 91020296 91020395 -151643958 + AluS SINE Alu 1 99 -213 322 339 55 37 chr1 91020995 91021213 -151643140 + MIR SINE MIR 5 226 -36 188 373 56 8 chr1 91021298 91021424 -151642929 - L2 LINE L2 -17 3296 3165 243 345 127 0 chr1 91021608 91021718 -151642635 - L2 LINE L2 0 3272 3149 671 214 0 0 chr1 91021844 91021970 -151642383 + FLAM_C SINE Alu 1 126 -7 375 258 44 61 chr1 91023876 91024041 -151640312 - L1ME2 LINE L1 -5324 1657 1364 315 263 69 50 chr1 91024047 91024207 -151640146 - L1ME2 LINE L1 -5132 1291 1129 23 0 0 0 chr1 91024451 91024474 -151639879 + AT_rich Low_complexity Low_complexity 1 23 0 279 253 63 58 chr1 91024619 91024809 -151639544 - L1ME2 LINE L1 -5967 456 266 25 0 0 0 chr1 91025989 91026014 -151638339 + AT_rich Low_complexity Low_complexity 1 25 0 261 0 0 0 chr1 91026355 91026384 -151637969 + (CA)n Simple_repeat Simple_repeat 2 30 0 2036 124 28 0 chr1 91026686 91026976 -151637377 - AluSx SINE Alu -14 298 1 7020 65 3 2 chr1 91027092 91028509 -151635844 + L1PA8 LINE L1 4751 6170 -2 251 341 75 4 chr1 91028901 91029064 -151635289 - MIR SINE MIR -69 139 18 292 207 17 0 chr1 91029740 91029798 -151634555 + AluJ/monomer SINE Alu 238 296 -6 22 35 0 0 chr1 91029805 91029834 -151634519 + AT_rich Low_complexity Low_complexity 1 29 0 287 148 0 33 chr1 91030067 91030128 -151634225 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 379 309 113 18 chr1 91030308 91030476 -151633877 - MIR SINE MIR -7 255 72 21 57 0 0 chr1 91030613 91030648 -151633705 + AT_rich Low_complexity Low_complexity 1 35 0 365 315 94 46 chr1 91030830 91031049 -151633304 - MIR SINE MIR -7 255 22 26 30 0 0 chr1 91031515 91031548 -151632805 + AT_rich Low_complexity Low_complexity 1 33 0 234 379 63 11 chr1 91032024 91032119 -151632234 - L2 LINE L2 -31 3241 3142 2039 138 24 6 chr1 91032140 91032481 -151631872 + MER47A DNA MER2_type 20 366 0 180 77 0 0 chr1 91032588 91032614 -151631739 + (GA)n Simple_repeat Simple_repeat 2 27 0 330 284 56 33 chr1 91032681 91032900 -151631453 - L1M4 LINE L1 -467 5697 5473 1368 197 47 89 chr1 91033127 91033339 -151631014 + MLT1A1 LTR MaLR 1 191 -174 2111 38 0 27 chr1 91033339 91033601 -151630752 - AluY SINE Alu 0 311 57 1368 197 47 89 chr1 91033601 91033769 -151630584 + MLT1A1 LTR MaLR 191 365 0 369 237 136 30 chr1 91033835 91034033 -151630320 - L1MEd LINE L1 -5303 816 598 360 251 31 0 chr1 91035023 91035129 -151629224 + L1MC5 LINE L1 6697 6795 -1166 275 24 0 49 chr1 91036255 91036296 -151628057 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 299 152 0 0 chr1 91037719 91037765 -151626588 + L2 LINE L2 3263 3308 -5 707 167 56 162 chr1 91038289 91038424 -151625929 + MER3 DNA MER1_type 1 102 -107 2268 106 16 47 chr1 91038424 91038810 -151625543 - THE1C LTR MaLR -1 374 1 707 167 56 162 chr1 91038810 91038908 -151625445 + MER3 DNA MER1_type 102 209 0 2568 10 0 33 chr1 91038913 91039213 -151625140 + AluYa5 SINE Alu 1 290 -21 415 208 17 17 chr1 91039706 91039826 -151624527 - Charlie5 DNA MER1_type -27 2585 2466 45 96 0 0 chr1 91039826 91039962 -151624391 + AT_rich Low_complexity Low_complexity 1 136 0 2182 219 47 31 chr1 91039970 91040503 -151623850 + MLT1F LTR MaLR 1 505 0 348 255 10 10 chr1 91040506 91040604 -151623749 + MLT1F-int LTR MaLR 5 102 -1269 751 281 58 4 chr1 91040664 91040938 -151623415 + MLT1F-int LTR MaLR 309 597 -774 2182 119 3 0 chr1 91041137 91041439 -151622914 - AluSp SINE Alu -10 303 1 423 356 11 11 chr1 91041479 91041667 -151622686 + MLT1F-int LTR MaLR 696 883 -488 500 270 20 125 chr1 91041856 91042208 -151622145 + MLT1F-int LTR MaLR 1023 1337 -34 1710 245 119 16 chr1 91042245 91042751 -151621602 + MLT1F1 LTR MaLR 10 567 0 604 204 45 22 chr1 91042751 91042904 -151621449 - MER33 DNA MER1_type -281 43 1 428 324 109 52 chr1 91042924 91043273 -151621080 + L2 LINE L2 2904 3272 0 202 310 0 0 chr1 91043274 91043332 -151621021 + L3 LINE CR1 1460 1517 -60 1638 181 6 19 chr1 91045201 91045516 -151618837 - AluJb SINE Alu -1 311 1 208 135 0 0 chr1 91045576 91045613 -151618740 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 931 183 31 13 chr1 91045613 91045842 -151618511 + L1MA7 LINE L1 6056 6288 -3 561 290 31 65 chr1 91046686 91046979 -151617374 - L2 LINE L2 -6 3307 3025 1295 261 65 36 chr1 91046980 91047429 -151616924 - MLT1C LTR MaLR 0 467 6 532 302 99 5 chr1 91047434 91047777 -151616576 - L2 LINE L2 -285 3028 1883 227 303 79 26 chr1 91047991 91048067 -151616286 + L2 LINE L2 3193 3272 0 275 330 10 25 chr1 91049375 91049575 -151614778 + MLT2E LTR ERVL 411 607 -21 213 121 0 0 chr1 91049575 91049608 -151614745 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 191 349 0 0 chr1 91050247 91050330 -151614023 - L3 LINE CR1 -919 658 576 1712 116 16 8 chr1 91050905 91051156 -151613197 + AluSq SINE Alu 32 284 -29 261 0 0 0 chr1 91051156 91051185 -151613168 + (CA)n Simple_repeat Simple_repeat 2 30 0 1176 252 40 26 chr1 91051185 91051605 -151612748 + HAL1 LINE L1 1886 2311 -196 290 246 45 36 chr1 91051629 91051739 -151612614 + HAL1 LINE L1 2397 2507 0 21 0 0 0 chr1 91051814 91051835 -151612518 + AT_rich Low_complexity Low_complexity 1 21 0 222 237 53 142 chr1 91052944 91053113 -151611240 - L2 LINE L2 -7 3306 3153 800 336 107 49 chr1 91053324 91053988 -151610365 - L2 LINE L2 -429 2885 2130 1690 187 0 0 chr1 91053988 91054266 -151610087 + AluJo SINE Alu 19 296 -16 800 336 107 49 chr1 91054266 91054717 -151609636 - L2 LINE L2 -1184 2130 1706 376 188 14 0 chr1 91054717 91054855 -151609498 + (TA)n Simple_repeat Simple_repeat 2 141 0 22 35 0 0 chr1 91055144 91055173 -151609180 + AT_rich Low_complexity Low_complexity 1 29 0 1498 250 25 83 chr1 91055245 91055377 -151608976 + MLT2B1 LTR ERVL 1 139 -381 1804 168 24 42 chr1 91055377 91055758 -151608595 - THE1C LTR MaLR 0 375 2 1498 250 25 83 chr1 91055758 91056131 -151608222 + MLT2B1 LTR ERVL 139 532 12 630 11 35 0 chr1 91056131 91056218 -151608135 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 192 40 0 0 chr1 91056224 91056249 -151608104 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 1498 250 25 83 chr1 91056249 91056287 -151608066 + MLT2B1 LTR ERVL 481 520 0 230 359 130 0 chr1 91056350 91056481 -151607872 - L2 LINE L2 -195 3077 2930 442 73 176 0 chr1 91056765 91056833 -151607520 - MADE1 DNA Mariner 0 80 1 * 1278 206 41 66 chr1 91056833 91057196 -151607157 - MLT1B LTR MaLR -32 358 5 2738 267 83 38 chr1 91057205 91057979 -151606374 - MLT1B-int LTR MaLR -6 1365 531 362 21 0 21 chr1 91057979 91058027 -151606326 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 2738 267 83 38 chr1 91058027 91058293 -151606060 - MLT1B-int LTR MaLR -840 531 278 490 138 11 11 chr1 91058284 91058371 -151605982 - MLT1B-int LTR MaLR -1283 88 2 * 11849 176 29 9 chr1 91058374 91060506 -151603847 + ERVL LTR ERVL 3592 5764 0 835 184 29 6 chr1 91060506 91060568 -151603785 + Ricksha DNA DNA 351 416 -1630 855 199 143 42 chr1 91060601 91060817 -151603536 + MLT2B1 LTR ERVL 283 520 0 539 133 12 0 chr1 91061933 91062016 -151602337 - MLT1A2 LTR MaLR -290 84 1 25 0 0 0 chr1 91062534 91062559 -151601794 + AT_rich Low_complexity Low_complexity 1 25 0 397 314 77 0 chr1 91063957 91064113 -151600240 - MIR SINE MIR -94 168 1 1077 216 176 13 chr1 91064521 91064914 -151599439 - Charlie1b DNA MER1_type -1 522 66 247 346 59 26 chr1 91065279 91065432 -151598921 - MIR SINE MIR -58 204 47 251 205 154 0 chr1 91065467 91065545 -151598808 + LTR37B LTR ERV1 3 92 -376 299 274 59 0 chr1 91065643 91065745 -151598608 + LTR37A LTR ERV1 111 218 -208 377 225 12 0 chr1 91065808 91065888 -151598465 + MER58 DNA MER1_type 134 2419 -1 1523 108 0 0 chr1 91066211 91066406 -151597947 + AluSx SINE Alu 1 195 -117 2011 191 31 8 chr1 91067659 91068046 -151596307 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr1 91068404 91068433 -151595920 + AT_rich Low_complexity Low_complexity 1 29 0 210 71 0 0 chr1 91069310 91069338 -151595015 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1854 165 52 0 chr1 91069653 91069981 -151594372 + MER7A DNA MER2_type 4 346 0 182 219 98 130 chr1 91070582 91070705 -151593648 - L3 LINE CR1 -869 708 590 282 340 19 10 chr1 91071228 91071331 -151593022 + MIR SINE MIR 20 123 -139 713 200 0 0 chr1 91071380 91071500 -151592853 + AluJb SINE Alu 1 120 -192 715 292 15 0 chr1 91072013 91072208 -151592145 - MIR SINE MIR -1 261 64 371 274 30 7 chr1 91072479 91072614 -151591739 - L1ME4a LINE L1 -3 6118 5981 470 176 0 8 chr1 91072798 91072923 -151591430 + (TA)n Simple_repeat Simple_repeat 2 125 0 25 0 0 0 chr1 91073374 91073399 -151590954 + AT_rich Low_complexity Low_complexity 1 25 0 303 346 0 19 chr1 91073469 91073628 -151590725 - L1ME4a LINE L1 -418 5703 5548 256 337 11 11 chr1 91074416 91074508 -151589845 - MIR SINE MIR -149 113 22 1852 223 3 0 chr1 91074633 91074997 -151589356 - MLT1A1 LTR MaLR 0 365 1 827 274 69 0 chr1 91075057 91075302 -151589051 + MIR SINE MIR 1 262 0 545 284 28 70 chr1 91076689 91077002 -151587351 - L2 LINE L2 -250 3063 2767 1139 216 60 33 chr1 91077064 91077301 -151587052 - L1MC3 LINE L1 0 7785 7535 4276 186 33 22 chr1 91077301 91078147 -151586206 - MER21B LTR ERV1 -4 859 5 1139 216 60 33 chr1 91078147 91078242 -151586111 - L1MC3 LINE L1 -250 7535 7444 1317 202 103 63 chr1 91078242 91078461 -151585892 - L1MC3 LINE L1 -672 7113 6904 243 0 0 0 chr1 91078461 91078488 -151585865 + (TG)n Simple_repeat Simple_repeat 2 28 0 1317 202 103 63 chr1 91078488 91078714 -151585639 - L1MC3 LINE L1 -881 6904 6650 365 254 184 0 chr1 91078728 91078842 -151585511 - L2 LINE L2 -602 2712 2578 21 36 0 0 chr1 91079734 91079762 -151584591 + AT_rich Low_complexity Low_complexity 1 28 0 212 348 44 61 chr1 91080221 91080404 -151583949 - MIR SINE MIR -55 207 29 260 209 64 81 chr1 91080451 91080560 -151583793 + MIR SINE MIR 94 196 -63 1553 207 28 23 chr1 91080986 91081338 -151583015 - MLT1A1 LTR MaLR 0 365 12 21 0 0 0 chr1 91082089 91082110 -151582243 + AT_rich Low_complexity Low_complexity 1 21 0 282 247 0 54 chr1 91082630 91082723 -151581630 - MIR SINE MIR -38 224 137 463 341 87 31 chr1 91083206 91083493 -151580860 - L2 LINE L2 0 3313 3011 385 309 62 28 chr1 91083566 91083744 -151580609 - MIR3 SINE MIR -2 206 23 274 222 28 0 chr1 91086473 91086545 -151577808 - MIR SINE MIR -45 217 144 292 306 97 14 chr1 91086621 91086765 -151577588 - MIR SINE MIR -105 157 2 551 216 115 11 chr1 91086836 91087015 -151577338 + MLT2E LTR ERVL 1 193 -435 464 286 80 49 chr1 91087020 91087244 -151577109 - L2 LINE L2 -396 2918 2688 680 287 120 38 chr1 91087244 91087404 -151576949 - L2 LINE L2 -1019 2295 2150 1751 190 3 3 chr1 91087404 91087699 -151576654 - AluJb SINE Alu -17 295 1 680 287 120 38 chr1 91087699 91087879 -151576474 - L2 LINE L2 -1164 2150 1927 231 95 0 0 chr1 91088431 91088473 -151575880 + LTR66 LTR ERVL 398 439 -171 229 75 50 0 chr1 91088475 91088515 -151575838 - L1MC4 LINE L1 -1339 6703 6662 24 0 0 0 chr1 91088563 91088587 -151575766 + AT_rich Low_complexity Low_complexity 1 24 0 1259 269 96 10 chr1 91089011 91089398 -151574955 + LTR16A LTR ERVL 16 435 -15 532 269 118 47 chr1 91089481 91089693 -151574660 + MIR SINE MIR 35 261 -1 332 329 125 20 chr1 91089731 91089883 -151574470 - MIR3 SINE MIR -31 177 10 1563 88 0 10 chr1 91090087 91090292 -151574061 + AluSg/x SINE Alu 103 305 -7 1468 154 0 5 chr1 91093482 91093703 -151570650 + AluJb SINE Alu 3 222 -90 216 97 0 0 chr1 91096591 91096622 -151567731 + (CA)n Simple_repeat Simple_repeat 2 32 0 729 261 126 52 chr1 91096736 91097219 -151567134 - LTR33A LTR ERVL -4 519 1 196 278 0 19 chr1 91097235 91097289 -151567064 + MIR SINE MIR 199 251 -11 242 182 15 15 chr1 91099161 91099170 -151565183 + (TA)n Simple_repeat Simple_repeat 2 10 -57 1932 89 0 0 chr1 91099170 91099406 -151564947 + AluSx SINE Alu 1 236 -76 242 182 15 15 chr1 91099406 91099462 -151564891 + (TA)n Simple_repeat Simple_repeat 9 67 0 236 186 10 29 chr1 91099549 91099651 -151564702 + (TA)n Simple_repeat Simple_repeat 2 101 0 190 273 0 0 chr1 91100603 91100658 -151563695 + L2 LINE L2 2043 2097 -1217 235 340 196 10 chr1 91100699 91100908 -151563445 + L2 LINE L2 3016 3263 -50 2050 134 127 21 chr1 91101456 91101843 -151562510 - MSTA LTR MaLR 0 428 1 9018 147 21 35 chr1 91101843 91103444 -151560909 - MSTA-int LTR MaLR 0 1580 3 1798 164 114 45 chr1 91103447 91103673 -151560680 - MSTA LTR MaLR -1 427 218 2852 3 0 3 chr1 91103673 91103985 -151560368 - AluYa5 SINE Alu 0 311 1 1798 164 114 45 chr1 91103985 91104154 -151560199 - MSTA LTR MaLR -210 218 5 203 125 25 0 chr1 91105531 91105571 -151558782 + (TG)n Simple_repeat Simple_repeat 1 41 0 368 238 56 56 chr1 91106621 91106747 -151557606 - MIR SINE MIR -65 197 72 546 300 80 31 chr1 91106748 91107164 -151557189 - LTR33 LTR ERVL -2 519 57 396 242 159 0 chr1 91107686 91107818 -151556535 + MER103 DNA DNA 2 154 -12 213 327 40 20 chr1 91108614 91108715 -151555638 + MIR SINE MIR 17 119 -89 206 345 0 36 chr1 91109241 91109325 -151555028 + MER5A DNA MER1_type 37 117 -72 186 143 0 0 chr1 91109325 91109360 -151554993 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 238 314 61 4 chr1 91109611 91109730 -151554623 - MIR SINE MIR -61 147 21 1130 299 224 18 chr1 91110918 91111647 -151552706 + L3 LINE CR1 383 1261 -316 418 312 63 53 chr1 91112172 91112473 -151551880 + L1 LINE L1 4749 5052 -1094 186 143 0 0 chr1 91112569 91112604 -151551749 + (GAA)n Simple_repeat Simple_repeat 2 36 0 588 300 59 83 chr1 91112664 91113037 -151551316 + L2 LINE L2 2373 2736 -578 427 299 39 29 chr1 91113026 91113233 -151551120 - L2 LINE L2 -2 3311 3103 * 207 328 54 86 chr1 91113254 91113440 -151550913 + MER91A DNA MER1_type 5 184 -12 2257 90 7 0 chr1 91113448 91113749 -151550604 - AluY SINE Alu -8 303 1 650 291 52 9 chr1 91113754 91113967 -151550386 - L2 LINE L2 -604 2710 2489 601 323 114 34 chr1 91114030 91114470 -151549883 + L2 LINE L2 2828 3302 -11 307 281 55 82 chr1 91115911 91116057 -151548296 + L2 LINE L2 3127 3268 -4 32 43 0 0 chr1 91116067 91116113 -151548240 + AT_rich Low_complexity Low_complexity 1 46 0 1777 171 0 25 chr1 91116276 91116592 -151547761 + AluJb SINE Alu 1 308 -4 23 0 0 0 chr1 91117420 91117443 -151546910 + AT_rich Low_complexity Low_complexity 1 23 0 217 399 24 24 chr1 91118329 91118542 -151545811 - L2 LINE L2 -905 2409 2197 196 348 76 34 chr1 91119807 91119925 -151544428 + L2 LINE L2 3187 3309 -4 310 228 0 0 chr1 91121449 91121528 -151542825 + L1MB1 LINE L1 6078 6156 -12 253 222 88 27 chr1 91121564 91121700 -151542653 + L1MA10 LINE L1 6014 6332 -1 252 318 246 0 chr1 91122407 91122533 -151541820 - L2 LINE L2 -3 3269 3113 446 190 91 8 chr1 91122629 91122750 -151541603 + MER53 DNA DNA 1 131 -58 342 204 0 0 chr1 91122762 91122850 -151541503 + (TA)n Simple_repeat Simple_repeat 2 89 0 303 364 24 38 chr1 91122904 91123113 -151541240 - L2 LINE L2 -213 3059 2854 554 296 76 48 chr1 91124384 91124578 -151539775 - L2 LINE L2 -6 3307 3101 1002 204 132 36 chr1 91124578 91124911 -151539442 + MLT1A1 LTR MaLR 1 365 0 554 296 76 48 chr1 91124911 91125007 -151539346 - L2 LINE L2 -212 3101 3009 2094 134 7 3 chr1 91125090 91125395 -151538958 + AluSx SINE Alu 1 306 -6 1136 315 0 18 chr1 91125521 91125864 -151538489 - LTR16A LTR ERVL 0 450 114 526 298 13 13 chr1 91126566 91126717 -151537636 + MER5A DNA MER1_type 2 152 -37 23 33 0 0 chr1 91130729 91130759 -151533594 + AT_rich Low_complexity Low_complexity 1 30 0 225 65 0 0 chr1 91130874 91130905 -151533448 + (TG)n Simple_repeat Simple_repeat 2 32 0 726 119 9 0 chr1 91130988 91131097 -151533256 - AluJb SINE Alu -190 122 13 22 0 0 0 chr1 91131279 91131301 -151533052 + AT_rich Low_complexity Low_complexity 1 22 0 2236 104 0 7 chr1 91132206 91132513 -151531840 + AluSc SINE Alu 1 305 -4 4936 218 14 9 chr1 91132741 91133943 -151530410 - L1 LINE L1 -2652 3494 2287 1793 94 45 4 chr1 91133937 91134132 -151530221 + L1PB1 LINE L1 5586 5796 -355 * 342 62 0 46 chr1 91134132 91134197 -151530156 + (TA)n Simple_repeat Simple_repeat 2 63 0 1793 94 45 4 chr1 91134197 91134267 -151530086 + L1PB1 LINE L1 5796 5862 -289 286 159 0 0 chr1 91134266 91134310 -151530043 - L1P5 LINE L1 -287 5864 5821 * 1221 113 0 0 chr1 91134308 91134485 -151529868 - L1PB1 LINE L1 -71 6080 5904 471 79 0 8 chr1 91134484 91134607 -151529746 + L1PB1 LINE L1 5871 6143 -8 * 25 0 0 0 chr1 91134788 91134813 -151529540 + AT_rich Low_complexity Low_complexity 1 25 0 23070 170 22 14 chr1 91135169 91140349 -151524004 - L1PA11 LINE L1 -2 7610 1578 189 74 0 0 chr1 91140349 91140376 -151523977 + (TTG)n Simple_repeat Simple_repeat 1 27 0 23070 170 22 14 chr1 91140376 91140741 -151523612 - L1PA11 LINE L1 -6034 1578 1217 354 223 151 22 chr1 91140760 91140899 -151523454 + MIR SINE MIR 5 161 -101 1402 176 8 0 chr1 91140900 91141139 -151523214 + MER7A DNA MER2_type 2 240 -106 580 241 63 45 chr1 91141176 91141534 -151522819 - MER61D LTR ERV1 -12 750 196 * 716 234 53 12 chr1 91141510 91141681 -151522672 - LTR28 LTR ERV1 -842 178 1 579 226 0 0 chr1 91141681 91141787 -151522566 + MER7A DNA MER2_type 228 333 -3 235 275 0 44 chr1 91141803 91141894 -151522459 + MIR SINE MIR 176 262 0 28 61 0 0 chr1 91142494 91142543 -151521810 + AT_rich Low_complexity Low_complexity 1 49 0 351 274 16 102 chr1 91143339 91143525 -151520828 - MIR SINE MIR -71 191 22 185 404 66 0 chr1 91143606 91143742 -151520611 - L2 LINE L2 -238 3034 2890 502 264 104 43 chr1 91144182 91144413 -151519940 - MIR SINE MIR -1 261 17 208 49 73 0 chr1 91144758 91144799 -151519554 + A-rich Low_complexity Low_complexity 2 45 0 14348 198 34 32 chr1 91146780 91151773 -151512580 + L1MA7 LINE L1 1209 6290 -237 910 185 0 0 chr1 91151777 91151923 -151512430 - AluSg/x SINE Alu -20 290 145 706 203 28 6 chr1 91151923 91152105 -151512248 + L1MA7 LINE L1 6342 6527 0 595 295 205 18 chr1 91152274 91152610 -151511743 + LTR33 LTR ERVL 1 399 -122 1627 266 53 2 chr1 91152686 91153081 -151511272 - MER70B LTR ERVL -152 426 12 2885 6 0 0 chr1 91153428 91153740 -151510613 - AluYb8 SINE Alu -6 312 1 24 0 0 0 chr1 91154827 91154851 -151509502 + AT_rich Low_complexity Low_complexity 1 24 0 571 316 11 6 chr1 91155442 91155616 -151508737 - MIR SINE MIR -59 203 29 287 325 75 25 chr1 91156011 91156171 -151508182 - L2 LINE L2 -213 3059 2892 568 332 56 0 chr1 91156338 91156570 -151507783 - HERV16 LTR ERVL -2095 2901 2657 1684 183 20 0 chr1 91156570 91156876 -151507477 + AluSx SINE Alu 1 312 0 664 137 24 0 chr1 91156891 91157015 -151507338 + GA-rich Low_complexity Low_complexity 2 128 0 1422 139 9 0 chr1 91157143 91157358 -151506995 + AluSg/x SINE Alu 86 302 -10 2122 317 59 22 chr1 91157497 91158918 -151505435 - HERV16 LTR ERVL -2488 2508 902 2295 98 0 3 chr1 91158918 91159223 -151505130 - AluSx SINE Alu -8 304 1 2122 317 59 22 chr1 91159223 91159762 -151504591 - HERV16 LTR ERVL -4094 902 384 23 0 0 0 chr1 91159907 91159930 -151504423 + AT_rich Low_complexity Low_complexity 1 23 0 1749 78 19 12 chr1 91160302 91160558 -151503795 - L1PA13 LINE L1 -6 6157 5900 240 413 35 31 chr1 91160602 91160859 -151503494 - L2 LINE L2 -2009 1305 1048 194 295 51 0 chr1 91161021 91161099 -151503254 - L2 LINE L2 -2502 812 731 953 318 90 6 chr1 91161126 91161592 -151502761 + L2 LINE L2 1932 2436 -878 445 258 8 8 chr1 91161662 91161782 -151502571 + MLT1H LTR MaLR 35 154 -395 243 155 0 183 chr1 91161999 91162070 -151502283 + MLT1H LTR MaLR 492 549 0 470 292 141 20 chr1 91162736 91162962 -151501391 + MIR SINE MIR 2 262 0 523 246 35 14 chr1 91162976 91163118 -151501235 + MLT1J1 LTR MaLR 1 145 -301 6749 135 43 24 chr1 91163278 91163338 -151501015 + Tigger1 DNA MER2_type 1 58 -2360 2221 123 3 0 chr1 91163338 91163646 -151500707 - AluSx SINE Alu -3 309 1 6749 135 43 24 chr1 91163646 91164757 -151499596 + Tigger1 DNA MER2_type 58 1194 -1224 342 246 128 75 chr1 91165163 91165468 -151498885 + L1ME LINE L1 5503 5823 -298 318 274 68 43 chr1 91165484 91165601 -151498752 + L2 LINE L2 3193 3312 -1 34 24 0 0 chr1 91165852 91165893 -151498460 + AT_rich Low_complexity Low_complexity 1 41 0 622 310 53 22 chr1 91165967 91166193 -151498160 - MIR SINE MIR 0 262 30 463 43 143 0 chr1 91166232 91166302 -151498051 + MADE1 DNA Mariner 1 80 0 338 310 55 114 chr1 91166791 91167152 -151497201 + L2 LINE L2 2933 3272 0 228 35 0 0 chr1 91167286 91167315 -151497038 + (CA)n Simple_repeat Simple_repeat 2 30 0 336 271 93 9 chr1 91167346 91167453 -151496900 - MIR SINE MIR -116 146 31 42 57 0 0 chr1 91170365 91170435 -151493918 + AT_rich Low_complexity Low_complexity 1 70 0 260 381 36 14 chr1 91170636 91170775 -151493578 + MIR3 SINE MIR 66 207 -1 2260 70 0 3 chr1 91175328 91175642 -151488711 + AluY SINE Alu 1 313 0 2265 296 116 10 chr1 91175956 91176882 -151487471 + L2 LINE L2 1634 2657 -657 438 262 67 76 chr1 91176885 91177095 -151487258 - LTR16C LTR ERVL 0 491 284 773 238 43 0 chr1 91177212 91177376 -151486977 - MER45A DNA AcHobo 0 178 8 351 331 59 20 chr1 91177492 91177746 -151486607 - L1ME LINE L1 -449 5672 5409 1325 188 45 27 chr1 91177802 91178137 -151486216 + L1ME1 LINE L1 4643 4983 -1163 207 0 0 0 chr1 91178347 91178370 -151485983 + (CA)n Simple_repeat Simple_repeat 1 23 0 2322 117 5 11 chr1 91178373 91178740 -151485613 + L1PA14 LINE L1 5796 6160 -1 1954 235 60 44 chr1 91178742 91179654 -151484699 + L1ME1 LINE L1 4987 5912 -254 936 204 0 0 chr1 91179892 91180054 -151484299 - FRAM SINE Alu -11 165 4 344 360 54 40 chr1 91180480 91180702 -151483651 - MIR SINE MIR -6 256 32 355 309 0 32 chr1 91180881 91181007 -151483346 - MIR SINE MIR -80 182 61 12856 24 5 2 chr1 91181471 91183437 -151480916 + L1PA4 LINE L1 3862 5832 -323 3557 194 42 6 chr1 91183578 91184285 -151480068 - MER44D DNA MER2_type 0 605 1 2332 83 3 0 chr1 91184612 91184912 -151479441 + AluSp SINE Alu 1 301 -12 22 35 0 0 chr1 91186288 91186317 -151478036 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 91186458 91186508 -151477845 + AT_rich Low_complexity Low_complexity 1 50 0 302 351 45 0 chr1 91187520 91187631 -151476722 + MIR SINE MIR 31 146 -116 464 268 63 66 chr1 91187895 91188275 -151476078 + L1MCa LINE L1 1026 1404 -5022 323 253 114 0 chr1 91188445 91188582 -151475771 + L1MDb LINE L1 1167 1356 -5114 36 0 0 0 chr1 91188591 91188627 -151475726 + AT_rich Low_complexity Low_complexity 1 36 0 340 318 15 30 chr1 91188639 91188840 -151475513 + L1MDb LINE L1 1806 2003 -4584 370 274 57 32 chr1 91189179 91189336 -151475017 + MLT1H1 LTR MaLR 353 513 -42 580 275 63 34 chr1 91189366 91189748 -151474605 + L1MDb LINE L1 2147 2539 -4048 391 285 120 22 chr1 91189757 91190256 -151474097 + L1MDb LINE L1 3199 3746 -2660 273 57 0 0 chr1 91190896 91190931 -151473422 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 30 45 0 0 chr1 91191120 91191164 -151473189 + AT_rich Low_complexity Low_complexity 1 44 0 2614 41 29 12 chr1 91191829 91192169 -151472184 + L1PA4 LINE L1 5807 6152 -3 26 30 0 0 chr1 91192169 91192202 -151472151 + AT_rich Low_complexity Low_complexity 1 33 0 2300 231 41 36 chr1 91192392 91192924 -151471429 - MLT1F LTR MaLR -7 535 1 617 290 77 14 chr1 91194121 91194328 -151470025 - MIR SINE MIR -25 237 18 2536 52 0 3 chr1 91195299 91195604 -151468749 - AluY SINE Alu -7 304 1 1396 229 164 34 chr1 91197184 91197661 -151466692 + MLT1F LTR MaLR 2 540 -2 315 261 78 59 chr1 91197873 91198026 -151466327 - MIR SINE MIR -59 203 48 1538 214 3 7 chr1 91198055 91198358 -151465995 - AluJo SINE Alu -10 302 1 207 0 0 0 chr1 91198464 91198487 -151465866 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2112 125 6 0 chr1 91198718 91199029 -151465324 - AluSq SINE Alu 0 313 1 270 95 0 0 chr1 91199606 91199648 -151464705 + (CA)n Simple_repeat Simple_repeat 2 43 0 612 276 103 0 chr1 91201240 91201425 -151462928 - MIR SINE MIR -11 251 48 214 261 0 72 chr1 91202649 91202718 -151461635 - L2 LINE L2 -43 3229 3166 21 36 0 0 chr1 91202848 91202876 -151461477 + AT_rich Low_complexity Low_complexity 1 28 0 368 97 16 0 chr1 91205575 91205637 -151458716 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 7913 153 31 40 chr1 91205741 91207206 -151457147 + Ricksha DNA DNA 1788 3238 -8 1023 290 133 26 chr1 91207787 91208280 -151456073 + L2 LINE L2 2251 2857 -457 260 380 42 21 chr1 91208325 91208517 -151455836 - L2 LINE L2 -2560 754 559 853 308 93 33 chr1 91208542 91208961 -151455392 - LTR16A LTR ERVL -6 444 1 700 144 0 68 chr1 91208982 91209114 -151455239 - AluJo SINE Alu -9 303 181 22 0 0 0 chr1 91209114 91209136 -151455217 + AT_rich Low_complexity Low_complexity 1 22 0 464 243 10 0 chr1 91209136 91209239 -151455114 - AluJo SINE Alu -202 110 7 193 375 42 50 chr1 91209255 91209514 -151454839 - L2 LINE L2 -2804 510 254 265 247 39 0 chr1 91209569 91209646 -151454707 + MIR SINE MIR 70 149 -113 189 147 0 0 chr1 91209700 91209734 -151454619 + (T)n Simple_repeat Simple_repeat 1 34 0 248 224 0 0 chr1 91211706 91211755 -151452598 + L2 LINE L2 3263 3311 -2 396 257 168 0 chr1 91214020 91214133 -151450220 - L2 LINE L2 0 3272 3141 2866 113 9 0 chr1 91214175 91214610 -151449743 + L1PB1 LINE L1 5710 6148 -3 558 244 16 119 chr1 91215160 91215463 -151448890 - LTR41 LTR ERVL -10 763 492 324 246 36 43 chr1 91215644 91215782 -151448571 - LTR41 LTR ERVL -636 137 1 2745 84 0 0 chr1 91216205 91216560 -151447793 + THE1A LTR MaLR 1 355 0 904 147 28 0 chr1 91216867 91217010 -151447343 - FAM SINE Alu -38 147 1 24 32 0 0 chr1 91218424 91218455 -151445898 + AT_rich Low_complexity Low_complexity 1 31 0 208 175 25 0 chr1 91218486 91218526 -151445827 + CT-rich Low_complexity Low_complexity 3 43 0 303 367 68 14 chr1 91220341 91220488 -151443865 + L2 LINE L2 3118 3272 0 359 327 120 34 chr1 91220856 91221064 -151443289 + MIR SINE MIR 30 255 -7 1684 306 196 49 chr1 91221137 91223600 -151440753 + L2 LINE L2 259 3083 -230 203 256 0 0 chr1 91223609 91223652 -151440701 + L2 LINE L2 3228 3270 -43 305 333 32 32 chr1 91224069 91224195 -151440158 - L2 LINE L2 -8 3305 3180 24 0 0 0 chr1 91224565 91224589 -151439764 + AT_rich Low_complexity Low_complexity 1 24 0 1611 152 0 19 chr1 91226009 91226239 -151438114 - L1MA4 LINE L1 -6 6294 6070 2325 94 3 0 chr1 91226239 91226537 -151437816 - AluSx SINE Alu -2 310 12 1611 152 0 19 chr1 91226537 91226615 -151437738 - L1MA4 LINE L1 -230 6070 5992 2571 184 125 18 chr1 91227201 91227858 -151436495 - LTR8A LTR ERV1 0 727 1 656 173 0 0 chr1 91227871 91227981 -151436372 - AluSg/x SINE Alu -9 300 191 3952 90 15 0 chr1 91228383 91228929 -151435424 + MER41A LTR ERV1 1 554 0 2384 179 58 43 chr1 91228929 91229698 -151434655 + MER41A-int LTR ERV1 1 1472 -5570 * 10231 119 40 21 chr1 91229674 91229842 -151434511 + MER41A-int LTR ERV1 909 1072 -4874 222 37 0 0 chr1 91229842 91229869 -151434484 + (TC)n Simple_repeat Simple_repeat 2 28 0 10231 119 40 21 chr1 91229869 91232948 -151431405 + MER41A-int LTR ERV1 1072 5944 -2 3193 115 78 2 chr1 91232948 91233463 -151430890 + MER41A LTR ERV1 1 554 0 4328 135 36 7 chr1 91233889 91234521 -151429832 - MER50 LTR ERV1 -25 709 54 378 0 0 0 chr1 91234521 91234563 -151429790 + (TG)n Simple_repeat Simple_repeat 2 43 0 4328 135 36 7 chr1 91234563 91234619 -151429734 - MER50 LTR ERV1 -680 54 1 314 363 14 27 chr1 91235220 91235366 -151428987 - MER5B DNA MER1_type -32 146 3 1943 258 86 11 chr1 91236065 91236632 -151427721 - MLT1E2 LTR MaLR -14 612 3 2317 208 54 15 chr1 91236746 91236768 -151427585 - MLT2B3 LTR ERVL 0 554 534 591 85 0 0 chr1 91236768 91236850 -151427503 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 2317 208 54 15 chr1 91236850 91237360 -151426993 - MLT2B3 LTR ERVL -20 534 1 941 137 0 0 chr1 91238794 91238933 -151425420 + FRAM SINE Alu 28 166 -10 218 250 203 0 chr1 91238966 91239030 -151425323 + L2 LINE L2 3234 3310 -3 319 239 0 15 chr1 91240116 91240183 -151424170 - L2 LINE L2 0 3272 3207 2103 127 3 22 chr1 91240949 91241264 -151423089 + AluSx SINE Alu 1 309 -3 246 122 0 0 chr1 91241708 91241749 -151422604 + MER52A LTR ERV1 1715 1755 0 298 330 47 39 chr1 91241783 91242016 -151422337 - MIR SINE MIR 0 262 28 579 269 51 0 chr1 91242320 91242476 -151421877 + MIR SINE MIR 94 257 -5 241 261 9 9 chr1 91243146 91243257 -151421096 + GA-rich Low_complexity Low_complexity 3 113 0 374 196 157 20 chr1 91243824 91243926 -151420427 - L2 LINE L2 -3 3310 3195 188 0 74 0 chr1 91244201 91244228 -151420125 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2240 107 0 0 chr1 91244447 91244746 -151419607 + AluSx SINE Alu 1 299 -13 5743 90 12 18 chr1 91245105 91245940 -151418413 + L1PA10 LINE L1 5334 6163 -5 201 94 0 0 chr1 91247121 91247153 -151417200 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 223 318 91 30 chr1 91248355 91248487 -151415866 + MIR SINE MIR 31 170 -92 327 273 18 64 chr1 91249370 91249480 -151414873 + L2 LINE L2 3168 3272 0 688 286 76 22 chr1 91249887 91250111 -151414242 - MIR SINE MIR -24 238 3 23 0 0 0 chr1 91250607 91250630 -151413723 + AT_rich Low_complexity Low_complexity 1 23 0 2796 230 86 22 chr1 91250981 91252040 -151412313 - L1ME2 LINE L1 -19 6145 5016 319 276 24 39 chr1 91252241 91252368 -151411985 - LTR33A LTR ERVL 0 523 399 290 326 109 0 chr1 91252540 91252687 -151411666 - LTR33A LTR ERVL -308 215 53 746 242 161 8 chr1 91253256 91253331 -151411022 + L1MB7 LINE L1 10 72 -6787 291 28 0 0 chr1 91253331 91253367 -151410986 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 746 242 161 8 chr1 91253367 91253539 -151410814 + L1MB7 LINE L1 72 295 -6564 1198 207 16 106 chr1 91253551 91253998 -151410355 + L1MB7 LINE L1 745 1253 -5606 7154 222 53 60 chr1 91254002 91254507 -151409846 + L1MB7 LINE L1 3276 3783 -3212 310 135 46 23 chr1 91254507 91254583 -151409770 - FRAM/FAM SINE Alu -93 82 25 7154 222 53 60 chr1 91254583 91254596 -151409757 + L1MB7 LINE L1 3783 3795 -3200 295 149 0 0 chr1 91254596 91254650 -151409703 + FLAM_A SINE Alu 70 114 -19 7154 222 53 60 chr1 91254650 91255990 -151408363 + L1MB7 LINE L1 3795 5143 -1852 2162 114 0 3 chr1 91255990 91256314 -151408039 + L1PB1 LINE L1 5828 6150 -1 7154 222 53 60 chr1 91256314 91258008 -151406345 + L1MB7 LINE L1 5143 6982 -13 330 288 31 86 chr1 91258129 91258292 -151406061 - MIR SINE MIR -49 213 60 297 395 40 7 chr1 91258897 91259049 -151405304 - MIR3 SINE MIR -21 187 31 195 42 0 0 chr1 91260108 91260132 -151404221 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 21 100 0 0 chr1 91260351 91260421 -151403932 + AT_rich Low_complexity Low_complexity 1 70 0 407 309 179 29 chr1 91262604 91262811 -151401542 + MIR SINE MIR 15 252 -10 23 0 0 0 chr1 91263848 91263871 -151400482 + AT_rich Low_complexity Low_complexity 1 23 0 32 57 0 0 chr1 91264805 91264858 -151399495 + AT_rich Low_complexity Low_complexity 1 53 0 2198 114 0 0 chr1 91264858 91265166 -151399187 + AluSg SINE Alu 1 308 -2 316 348 97 0 chr1 91265244 91265399 -151398954 + MIR SINE MIR 49 218 -44 1971 140 0 3 chr1 91265468 91265794 -151398559 - AluSx SINE Alu 0 325 1 287 55 455 0 chr1 91265994 91266049 -151398304 - MADE1 DNA Mariner 0 80 1 406 233 48 96 chr1 91266315 91266461 -151397892 + MIR SINE MIR 53 191 -71 555 299 24 18 chr1 91267709 91267876 -151396477 + MIR SINE MIR 25 192 -70 22 0 0 0 chr1 91267931 91267953 -151396400 + AT_rich Low_complexity Low_complexity 1 22 0 879 296 37 39 chr1 91269259 91269747 -151394606 - L2 LINE L2 -62 3251 2763 1262 93 0 0 chr1 91269873 91270035 -151394318 + AluY SINE Alu 132 293 -18 260 401 44 72 chr1 91270216 91270535 -151393818 + L2 LINE L2 2963 3272 0 1931 179 0 0 chr1 91270572 91270880 -151393473 - AluJb SINE Alu 0 312 5 507 348 85 43 chr1 91271535 91272308 -151392045 + L3 LINE CR1 675 1576 -1 186 257 203 0 chr1 91272415 91272489 -151391864 - MIR SINE MIR -16 246 158 182 294 0 20 chr1 91272628 91272679 -151391674 - MIR SINE MIR 0 262 213 6147 31 0 0 chr1 91272691 91273422 -151390931 - L1PA4 LINE L1 -3 6152 5422 460 271 60 23 chr1 91273442 91273575 -151390778 - MIR SINE MIR -120 142 5 270 0 0 0 chr1 91275697 91275727 -151388626 + (CA)n Simple_repeat Simple_repeat 1 30 0 320 346 101 56 chr1 91275783 91276179 -151388174 + L2 LINE L2 2207 2620 -694 229 132 0 0 chr1 91276461 91276499 -151387854 + Alu SINE Alu 256 293 -9 964 239 19 61 chr1 91278137 91278401 -151385952 - MIR SINE MIR 0 262 10 184 236 18 18 chr1 91278502 91278557 -151385796 - MER5A DNA MER1_type -6 183 129 2088 132 0 3 chr1 91278565 91278876 -151385477 + AluSx SINE Alu 1 310 -2 316 348 97 0 chr1 91278954 91279109 -151385244 + MIR SINE MIR 49 218 -44 245 50 0 25 chr1 91279178 91279218 -151385135 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1917 140 0 7 chr1 91279220 91279505 -151384848 - AluSx SINE Alu -29 283 1 287 55 455 0 chr1 91279705 91279760 -151384593 - MADE1 DNA Mariner 0 80 1 8010 13 2 0 chr1 91279958 91281462 -151382891 + L1HS LINE L1 4647 6153 -2 270 221 0 0 chr1 91281469 91281564 -151382789 + A-rich Low_complexity Low_complexity 1 95 0 400 231 48 102 chr1 91281636 91281783 -151382570 + MIR SINE MIR 53 191 -71 555 299 24 18 chr1 91283031 91283198 -151381155 + MIR SINE MIR 25 192 -70 22 0 0 0 chr1 91283253 91283275 -151381078 + AT_rich Low_complexity Low_complexity 1 22 0 846 295 36 44 chr1 91284581 91285072 -151379281 - L2 LINE L2 -62 3251 2763 1248 99 0 0 chr1 91285198 91285360 -151378993 + AluY SINE Alu 132 293 -18 260 401 44 72 chr1 91285541 91285860 -151378493 + L2 LINE L2 2963 3272 0 1916 182 0 0 chr1 91285897 91286205 -151378148 - AluJb SINE Alu 0 312 5 519 347 85 43 chr1 91286860 91287633 -151376720 + L3 LINE CR1 675 1576 -1 186 257 203 0 chr1 91287740 91287814 -151376539 - MIR SINE MIR -16 246 158 182 294 0 20 chr1 91287953 91288004 -151376349 - MIR SINE MIR 0 262 213 6147 31 0 0 chr1 91288016 91288747 -151375606 - L1PA4 LINE L1 -3 6152 5422 460 271 60 23 chr1 91288767 91288900 -151375453 - MIR SINE MIR -120 142 5 216 0 0 0 chr1 91291022 91291046 -151373307 + (CA)n Simple_repeat Simple_repeat 1 24 0 312 346 101 56 chr1 91291102 91291498 -151372855 + L2 LINE L2 2207 2620 -694 229 132 0 0 chr1 91291780 91291818 -151372535 + Alu SINE Alu 255 292 -9 825 180 74 66 chr1 91293132 91293388 -151370965 - L1MA9 LINE L1 -36 6276 6019 594 272 86 4 chr1 91294948 91295180 -151369173 - L1MC4a LINE L1 -1894 5914 5664 253 353 33 8 chr1 91295195 91295317 -151369036 - MIR SINE MIR -72 190 66 368 236 86 14 chr1 91296678 91296818 -151367535 - L1ME4a LINE L1 -13 6108 5959 237 337 107 51 chr1 91297125 91297303 -151367050 + MER5A DNA MER1_type 1 188 -1 250 336 53 18 chr1 91297606 91297719 -151366634 - MIR3 SINE MIR -23 185 69 21 0 0 0 chr1 91297980 91298001 -151366352 + AT_rich Low_complexity Low_complexity 1 21 0 570 336 106 14 chr1 91298059 91298428 -151365925 + LTR16B LTR ERVL 62 464 0 190 414 10 10 chr1 91299170 91299274 -151365079 - L2 LINE L2 -223 3049 2946 239 348 99 0 chr1 91299284 91299465 -151364888 - MIR SINE MIR -18 244 46 21 0 0 0 chr1 91300966 91300987 -151363366 + AT_rich Low_complexity Low_complexity 1 21 0 1385 292 60 23 chr1 91300997 91301484 -151362869 + MLT2F LTR ERVL 1 505 -158 33 25 0 0 chr1 91301969 91302009 -151362344 + AT_rich Low_complexity Low_complexity 1 40 0 206 75 47 65 chr1 91302009 91302116 -151362237 + (TATAA)n Simple_repeat Simple_repeat 3 107 0 352 351 105 20 chr1 91302335 91302631 -151361722 + L2 LINE L2 2988 3308 -5 2288 70 13 3 chr1 91302799 91303098 -151361255 - AluY SINE Alu -9 302 1 256 211 0 0 chr1 91303286 91303338 -151361015 - L2 LINE L2 0 3313 3262 235 337 45 11 chr1 91304440 91304529 -151359824 - L2 LINE L2 -2506 808 717 394 355 58 0 chr1 91304543 91304664 -151359689 + L2 LINE L2 3136 3263 -9 225 0 0 0 chr1 91304746 91304771 -151359582 + (A)n Simple_repeat Simple_repeat 1 25 0 476 267 90 42 chr1 91305135 91305423 -151358930 + L1MC/D LINE L1 5521 5822 -1986 15139 142 40 28 chr1 91305517 91306702 -151357651 + Tigger2 DNA MER2_type 8 1178 -1540 2292 92 0 22 chr1 91306702 91307017 -151357336 + AluY SINE Alu 1 308 -3 15139 142 40 28 chr1 91307017 91308398 -151355955 + Tigger2 DNA MER2_type 1178 2609 -109 2176 115 3 10 chr1 91308398 91308712 -151355641 - AluSq SINE Alu -1 312 1 15139 142 40 28 chr1 91308712 91308823 -151355530 + Tigger2 DNA MER2_type 2609 2717 -1 976 245 206 68 chr1 91308976 91309942 -151354411 - LTR28 LTR ERV1 -18 1737 1 211 348 93 0 chr1 91310099 91310217 -151354136 + L2 LINE L2 1295 1423 -1891 2539 105 8 0 chr1 91310266 91310618 -151353735 - THE1A LTR MaLR 0 355 1 291 331 128 35 chr1 91310639 91311146 -151353207 + L2 LINE L2 1574 2127 -1187 439 291 42 46 chr1 91311163 91311424 -151352929 + MER102a DNA MER1_type 38 297 -33 260 234 32 21 chr1 91311436 91311530 -151352823 - Charlie7 DNA MER1_type 0 2612 2518 608 322 30 66 chr1 91311534 91312108 -151352245 - L1MEd LINE L1 -5186 933 381 246 330 9 9 chr1 91312305 91312417 -151351936 - L1MEd LINE L1 -6006 113 2 916 234 310 11 chr1 91312418 91313124 -151351229 - Charlie7 DNA MER1_type -79 2533 1617 1140 246 11 22 chr1 91313214 91313491 -151350862 - L1MC4 LINE L1 -450 7592 7319 312 313 62 0 chr1 91313489 91313633 -151350720 - L1M4 LINE L1 -2207 3939 3787 * 516 252 79 67 chr1 91313640 91313991 -151350362 - L1ME LINE L1 -527 5643 5288 2250 116 3 0 chr1 91314049 91314360 -151349993 - AluSx SINE Alu 0 312 1 315 226 11 54 chr1 91314360 91314453 -151349900 - Charlie7 DNA MER1_type -1015 1597 1509 308 333 68 26 chr1 91314531 91314648 -151349705 - Charlie7 DNA MER1_type -2325 287 166 333 302 43 58 chr1 91315029 91315168 -151349185 + L2 LINE L2 3136 3272 0 202 356 93 0 chr1 91316382 91316500 -151347853 + L3 LINE CR1 1324 1452 -125 1365 209 68 51 chr1 91316557 91317025 -151347328 - Charlie1b DNA MER1_type -9 514 39 321 26 0 0 chr1 91317535 91317573 -151346780 + (TG)n Simple_repeat Simple_repeat 2 39 0 290 327 100 18 chr1 91317720 91317830 -151346523 + L2 LINE L2 3154 3272 0 256 380 93 7 chr1 91317955 91318105 -151346248 - L3 LINE CR1 -11 1566 1404 180 299 287 0 chr1 91318520 91318607 -151345746 - L2 LINE L2 -32 3240 3129 23 54 0 0 chr1 91320082 91320119 -151344234 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr1 91320250 91320280 -151344073 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr1 91321610 91321648 -151342705 + AT_rich Low_complexity Low_complexity 1 38 0 254 402 30 12 chr1 91321965 91322134 -151342219 - L2 LINE L2 -5 3267 3096 251 320 21 31 chr1 91322894 91322991 -151341362 + MIR SINE MIR 47 142 -66 218 182 23 0 chr1 91323192 91323236 -151341117 + L2 LINE L2 3269 3313 0 1835 132 7 7 chr1 91323275 91323571 -151340782 + AluSx SINE Alu 17 312 0 21 0 0 0 chr1 91325137 91325158 -151339195 + AT_rich Low_complexity Low_complexity 1 21 0 2143 75 11 0 chr1 91326057 91326339 -151338014 + AluY SINE Alu 1 285 -26 217 309 191 0 chr1 91326341 91326435 -151337918 - MIR SINE MIR -140 122 11 222 176 0 0 chr1 91327373 91327424 -151336929 + (TA)n Simple_repeat Simple_repeat 1 51 0 670 255 160 0 chr1 91327429 91327641 -151336712 + MIR SINE MIR 12 257 -5 2289 101 0 3 chr1 91329200 91329506 -151334847 - AluSx SINE Alu -7 305 1 482 281 113 69 chr1 91329760 91330914 -151333439 - L1ME3A LINE L1 -282 6386 5117 222 37 0 0 chr1 91330914 91330941 -151333412 + (TTA)n Simple_repeat Simple_repeat 1 27 0 482 281 113 69 chr1 91330941 91331519 -151332834 - L1ME3A LINE L1 -1551 5117 4566 270 0 0 0 chr1 91332712 91332742 -151331611 + (TG)n Simple_repeat Simple_repeat 2 31 0 689 197 121 25 chr1 91332742 91332940 -151331413 - L1MB7 LINE L1 -10 6174 5958 1976 264 101 22 chr1 91332940 91334482 -151329871 - L1M4 LINE L1 -3263 3381 1600 4213 260 23 37 chr1 91334513 91335853 -151328500 - L1M4 LINE L1 -5201 1341 20 189 0 0 0 chr1 91336091 91336112 -151328241 + (CA)n Simple_repeat Simple_repeat 1 21 0 2935 149 101 11 chr1 91336351 91336914 -151327439 + MER39 LTR ERV1 90 703 -4 368 309 16 16 chr1 91337699 91337825 -151326528 - MIR3 SINE MIR -1 207 82 1822 194 78 37 chr1 91338145 91338630 -151325723 + MLT1D LTR MaLR 1 505 0 5315 136 11 2 chr1 91340000 91341577 -151322776 - L1MA1 LINE L1 -4 6298 4592 188 297 144 18 chr1 91346361 91346472 -151317881 - L2 LINE L2 -263 3050 2926 917 191 35 0 chr1 91346625 91346798 -151317555 + AluJb SINE Alu 121 299 -13 206 250 145 13 chr1 91346827 91346903 -151317450 + MIR SINE MIR 176 261 -1 509 258 21 96 chr1 91347089 91347329 -151317024 + L2 LINE L2 3085 3306 -7 4182 173 49 48 chr1 91347339 91347941 -151316412 + L1MD1 LINE L1 5265 5870 -372 522 0 0 0 chr1 91347941 91347999 -151316354 + (CATAA)n Simple_repeat Simple_repeat 5 62 0 4182 173 49 48 chr1 91347999 91348373 -151315980 + L1MD1 LINE L1 5870 6242 0 483 259 80 12 chr1 91348420 91348582 -151315771 - MIR SINE MIR -10 252 80 754 223 55 29 chr1 91348613 91348887 -151315466 - L1MC5 LINE L1 -52 7909 7629 2503 279 65 34 chr1 91350537 91351901 -151312452 + L1MEc LINE L1 58 1644 -4573 463 286 51 29 chr1 91352186 91352361 -151311992 + L2 LINE L2 299 477 -2837 24 32 0 0 chr1 91352866 91352897 -151311456 + AT_rich Low_complexity Low_complexity 1 31 0 1939 172 3 0 chr1 91353295 91353603 -151310750 - AluSx SINE Alu -1 311 3 461 282 90 31 chr1 91354292 91354656 -151309697 + LTR16B LTR ERVL 1 464 0 296 227 13 0 chr1 91355041 91355116 -151309237 - MER116 DNA Mariner 0 80 5 1581 159 37 0 chr1 91355377 91355678 -151308675 + AluJb SINE Alu 3 313 0 2529 223 65 9 chr1 91355937 91356601 -151307752 - Tigger6a DNA MER2_type -22 1061 361 522 139 0 0 chr1 91356601 91356687 -151307666 + (TTCC)n Simple_repeat Simple_repeat 1 86 0 628 240 0 0 chr1 91356690 91356815 -151307538 - FLAM_A SINE Alu -6 127 3 787 65 14 22 chr1 91356829 91356968 -151307385 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 1867 210 8 3 chr1 91356982 91357358 -151306995 - Tigger6a DNA MER2_type -704 379 2 292 307 85 7 chr1 91357391 91357544 -151306809 + L2 LINE L2 3149 3313 0 765 292 29 5 chr1 91357670 91357879 -151306474 + MIR SINE MIR 48 261 -1 224 149 21 0 chr1 91358021 91358068 -151306285 + (TG)n Simple_repeat Simple_repeat 1 48 0 1705 283 40 25 chr1 91358987 91360045 -151304308 - L1ME3A LINE L1 -164 6006 4933 692 201 35 0 chr1 91360375 91360519 -151303834 - L1MB1 LINE L1 0 6168 6020 318 151 19 0 chr1 91360519 91360572 -151303781 + L2 LINE L2 2283 2336 -978 1747 251 33 41 chr1 91360573 91361114 -151303239 + MER34 LTR ERV1 1 537 -5 604 303 29 12 chr1 91361114 91361355 -151302998 + L2 LINE L2 2332 2576 -738 813 226 97 23 chr1 91361509 91361766 -151302587 + L2 LINE L2 2558 2833 -481 21 0 0 0 chr1 91362376 91362397 -151301956 + AT_rich Low_complexity Low_complexity 1 21 0 354 271 47 9 chr1 91362943 91363050 -151301303 - Charlie2 DNA MER1_type -2748 114 4 373 338 81 76 chr1 91364384 91364718 -151299635 - HAL1b LINE L1 -576 772 441 1613 186 0 25 chr1 91364718 91364859 -151299494 + AluJo SINE Alu 1 144 -168 321 0 61 0 chr1 91364859 91364908 -151299445 + (TA)n Simple_repeat Simple_repeat 2 53 0 1613 186 0 25 chr1 91364908 91365084 -151299269 + AluJo SINE Alu 144 310 -2 373 338 81 76 chr1 91365084 91365450 -151298903 - HAL1b LINE L1 -907 441 68 204 190 69 0 chr1 91365888 91365946 -151298407 + CT-rich Low_complexity Low_complexity 1 62 0 329 246 52 27 chr1 91365986 91366121 -151298232 + MIR SINE MIR 99 238 -24 31 92 0 0 chr1 91366157 91366244 -151298109 + AT_rich Low_complexity Low_complexity 1 87 0 26 0 0 0 chr1 91366847 91366873 -151297480 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr1 91367176 91367214 -151297139 + AT_rich Low_complexity Low_complexity 1 38 0 1032 267 41 64 chr1 91367800 91368403 -151295950 + L1MC5 LINE L1 6616 7223 -738 393 207 0 46 chr1 91368596 91368683 -151295670 + L2 LINE L2 3229 3311 -2 225 291 36 0 chr1 91370151 91370206 -151294147 + L2 LINE L2 3121 3177 -95 196 318 93 37 chr1 91374558 91374665 -151289688 - L2 LINE L2 -8 3305 3193 1065 200 9 18 chr1 91377093 91377313 -151287040 + MER20 DNA MER1_type 2 219 0 988 287 98 68 chr1 91377454 91378293 -151286060 - L1M4 LINE L1 -2896 3250 2377 1124 236 70 17 chr1 91378293 91378637 -151285716 + MLT1A1 LTR MaLR 4 365 0 988 287 98 68 chr1 91378637 91378873 -151285480 - L1M4 LINE L1 -3769 2377 2149 926 240 77 5 chr1 91378908 91379129 -151285224 - MER8 DNA MER2_type 0 239 3 189 269 0 0 chr1 91379163 91379230 -151285123 + CT-rich Low_complexity Low_complexity 3 69 0 1048 231 9 13 chr1 91380735 91380960 -151283393 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr1 91381570 91381591 -151282762 + AT_rich Low_complexity Low_complexity 1 21 0 258 294 112 14 chr1 91382855 91382998 -151281355 + MLT1J LTR MaLR 7 163 -348 204 97 0 0 chr1 91383325 91383356 -151280997 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1183 218 40 93 chr1 91386259 91386787 -151277566 - MLT1D LTR MaLR -5 500 1 340 302 116 0 chr1 91387939 91388068 -151276285 - MER45A DNA AcHobo -34 144 1 578 267 91 43 chr1 91388260 91388372 -151275981 + MIR SINE MIR 20 125 -137 15413 139 48 5 chr1 91388372 91390988 -151273365 + Tigger4(Zombi) DNA MER2_type 1 2727 -4 578 267 91 43 chr1 91390988 91391107 -151273246 + MIR SINE MIR 125 262 0 21 0 0 0 chr1 91391244 91391265 -151273088 + AT_rich Low_complexity Low_complexity 1 21 0 221 281 18 0 chr1 91391351 91391408 -151272945 - L2 LINE L2 -2 3311 3254 433 203 0 0 chr1 91393673 91393752 -151270601 + Tigger5 DNA MER2_type 1 79 -2244 238 255 0 0 chr1 91393754 91393805 -151270548 - Tigger5 DNA MER2_type -6 2317 2267 680 273 35 6 chr1 91393834 91394006 -151270347 - MER45A DNA AcHobo -1 177 1 270 143 0 0 chr1 91394230 91394279 -151270074 + (GA)n Simple_repeat Simple_repeat 2 50 0 931 177 99 51 chr1 91395779 91396089 -151268264 + MER66A LTR ERV1 97 344 -134 4223 121 174 98 chr1 91396110 91397536 -151266817 - pTR5 LTR ERV1 0 2438 744 427 182 23 0 chr1 91397536 91397624 -151266729 + MER66A LTR ERV1 385 474 -4 5350 227 60 33 chr1 91397632 91399206 -151265147 + MER66A-int LTR ERV1 1 1617 -5059 6804 221 47 33 chr1 91399224 91400961 -151263392 + MER66A-int LTR ERV1 1282 3417 -3190 283 286 11 0 chr1 91400961 91401052 -151263301 + LTR57-int LTR ERVL 1320 1411 -3932 6804 221 47 33 chr1 91401052 91401081 -151263272 + MER66A-int LTR ERV1 3417 3444 -3163 1610 167 71 57 chr1 91401072 91401679 -151262674 + MER66A-int LTR ERV1 3142 3739 -2937 * 2041 123 0 14 chr1 91401679 91401984 -151262369 - AluSg SINE Alu 0 301 1 1610 167 71 57 chr1 91401984 91402121 -151262232 + MER66A-int LTR ERV1 3739 4433 -2243 283 301 60 0 chr1 91402121 91402204 -151262149 + MER4D LTR ERV1 73 160 -712 277 149 0 0 chr1 91402273 91402320 -151262033 + PRIMA41-int LTR ERV1 5993 6039 -1717 2254 146 45 21 chr1 91402336 91402754 -151261599 + PRIMA41-int LTR ERV1 6248 6675 -1 1057 172 82 52 chr1 91402861 91403129 -151261224 + MER66A LTR ERV1 203 478 0 232 407 50 0 chr1 91403132 91403272 -151261081 + MIR SINE MIR 46 192 -70 4113 191 74 14 chr1 91403447 91404259 -151260094 + MER21B LTR ERV1 1 861 -2 1753 138 90 36 chr1 91404371 91404727 -151259626 - THE1C LTR MaLR 0 375 1 314 208 0 0 chr1 91404762 91404815 -151259538 - L2 LINE L2 -20 3293 3241 490 289 8 0 chr1 91404858 91404986 -151259367 + MIR SINE MIR 109 237 -25 853 279 53 0 chr1 91405036 91405262 -151259091 + MIR SINE MIR 21 258 -4 954 210 24 28 chr1 91405281 91405529 -151258824 + L1ME2 LINE L1 5909 6155 -9 323 310 60 0 chr1 91405783 91405899 -151258454 + MIR3 SINE MIR 85 207 -1 180 273 136 61 chr1 91408813 91408879 -151255474 + L2 LINE L2 3158 3228 -44 453 331 130 19 chr1 91409414 91409837 -151254516 - L1 LINE L1 -816 5330 4861 758 267 53 20 chr1 91410204 91410609 -151253744 + L1ME3A LINE L1 5204 5623 -543 2580 175 8 16 chr1 91410609 91411157 -151253196 + LTR27 LTR ERV1 3 1252 -137 423 234 35 35 chr1 91411174 91411315 -151253038 + LTR27 LTR ERV1 494 634 -2 1077 238 105 27 chr1 91411318 91411488 -151252865 + L1ME3A LINE L1 5633 5788 -382 393 239 46 86 chr1 91411488 91411685 -151252668 - MER5A DNA MER1_type 0 189 1 1077 238 105 27 chr1 91411685 91411922 -151252431 + L1ME3A LINE L1 5788 6072 -98 741 169 0 74 chr1 91413771 91413919 -151250434 + FRAM SINE Alu 5 141 -35 207 290 0 0 chr1 91413940 91414002 -151250351 + A-rich Low_complexity Low_complexity 1 62 0 251 244 22 78 chr1 91414114 91414204 -151250149 + L2 LINE L2 2677 2761 -553 326 305 93 25 chr1 91414336 91414454 -151249899 + L2 LINE L2 3138 3263 -9 2093 128 0 0 chr1 91414456 91414745 -151249608 + AluSx SINE Alu 1 289 -23 2453 166 65 62 chr1 91415777 91416392 -151247961 + MER39 LTR ERV1 91 707 0 1005 284 99 63 chr1 91417911 91418581 -151245772 + L2 LINE L2 2593 3286 -27 943 226 58 63 chr1 91418583 91418619 -151245734 - MLT1A1 LTR MaLR -2 363 328 2292 99 41 36 chr1 91418619 91418981 -151245372 - THE1B LTR MaLR 0 364 1 943 226 58 63 chr1 91418981 91419306 -151245047 - MLT1A1 LTR MaLR -37 328 4 421 373 19 10 chr1 91419394 91419603 -151244750 + L2 LINE L2 2844 3054 -218 252 59 0 0 chr1 91421098 91421132 -151243221 + (TG)n Simple_repeat Simple_repeat 1 34 0 206 251 48 42 chr1 91422122 91422231 -151242122 - MIR SINE MIR -74 134 27 207 0 0 0 chr1 91422565 91422588 -151241765 + (CA)n Simple_repeat Simple_repeat 1 23 0 2028 144 3 3 chr1 91422917 91423216 -151241137 + AluJb SINE Alu 1 299 -13 43 56 0 0 chr1 91423218 91423289 -151241064 + AT_rich Low_complexity Low_complexity 1 71 0 760 218 41 0 chr1 91424283 91424453 -151239900 + MER45A DNA AcHobo 1 177 -1 567 269 129 35 chr1 91425861 91426147 -151238206 - LTR16C LTR ERVL -1 490 178 397 274 28 0 chr1 91426688 91426794 -151237559 - L2 LINE L2 -1 3312 3204 187 146 0 42 chr1 91429322 91429370 -151234983 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 743 143 107 0 chr1 91430040 91430208 -151234145 - MER53 DNA DNA 0 189 4 614 295 84 7 chr1 91431839 91432066 -151232287 - MIR SINE MIR -6 256 18 1292 95 9 33 chr1 91432181 91432392 -151231961 - L1PB2 LINE L1 -2 6149 5944 2271 87 0 0 chr1 91432575 91432873 -151231480 + AluSg SINE Alu 1 298 -12 1249 173 69 106 chr1 91433865 91434241 -151230112 - MLT1A1 LTR MaLR 0 365 4 196 289 66 26 chr1 91434524 91434600 -151229753 + L2 LINE L2 3230 3308 -5 244 258 0 16 chr1 91435807 91435869 -151228484 - LTR33A LTR ERVL -19 504 444 901 243 60 41 chr1 91436170 91436315 -151228038 + L1MD3 LINE L1 6459 6600 -1395 239 0 32 0 chr1 91436315 91436346 -151228007 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 901 243 60 41 chr1 91436346 91436601 -151227752 + L1MD3 LINE L1 6600 6849 -1146 208 0 0 59 chr1 91436601 91436635 -151227718 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 901 243 60 41 chr1 91436635 91437449 -151226904 + L1MD3 LINE L1 6849 7799 -196 275 248 53 35 chr1 91437765 91437878 -151226475 - MLT2E LTR ERVL -486 142 28 2150 72 0 34 chr1 91437996 91438339 -151226014 + AluY SINE Alu 1 333 0 329 316 181 35 chr1 91438393 91438741 -151225612 - L2 LINE L2 0 3313 2915 276 340 94 38 chr1 91438800 91439012 -151225341 - L2 LINE L2 -580 2734 2511 712 182 0 15 chr1 91439597 91439729 -151224624 + FLAM_C SINE Alu 1 130 -3 180 125 0 0 chr1 91439869 91439901 -151224452 + (CA)n Simple_repeat Simple_repeat 2 33 0 288 0 0 0 chr1 91439901 91439933 -151224420 + (TAA)n Simple_repeat Simple_repeat 2 33 0 339 315 79 35 chr1 91439936 91440139 -151224214 - HAL1 LINE L1 -57 2450 2239 668 282 85 16 chr1 91440790 91441106 -151223247 - HAL1 LINE L1 -695 1812 1475 377 179 12 0 chr1 91441130 91441214 -151223139 + CT-rich Low_complexity Low_complexity 3 87 0 256 306 33 60 chr1 91441216 91441517 -151222836 - HAL1 LINE L1 -1046 1461 1169 327 372 35 22 chr1 91441819 91442045 -151222308 - L2 LINE L2 -463 2851 2623 225 0 0 0 chr1 91443268 91443293 -151221060 + (T)n Simple_repeat Simple_repeat 1 25 0 213 159 0 0 chr1 91443384 91443428 -151220925 + A-rich Low_complexity Low_complexity 1 44 0 192 40 0 0 chr1 91443786 91443811 -151220542 + (CAGC)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 91445951 91445972 -151218381 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 91446880 91446915 -151217438 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 91448776 91448798 -151215555 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 91448957 91448997 -151215356 + AT_rich Low_complexity Low_complexity 1 40 0 226 278 89 99 chr1 91451130 91451291 -151213062 - MIR SINE MIR -63 145 4 565 292 66 25 chr1 91451513 91451756 -151212597 - MIR SINE MIR -8 254 2 23 0 0 0 chr1 91452232 91452255 -151212098 + AT_rich Low_complexity Low_complexity 1 23 0 359 283 94 25 chr1 91452275 91452434 -151211919 + MIR SINE MIR 20 189 -73 334 300 50 50 chr1 91452433 91452553 -151211800 + L2 LINE L2 3151 3270 -2 * 25 65 0 0 chr1 91452606 91452652 -151211701 + AT_rich Low_complexity Low_complexity 1 46 0 714 244 55 20 chr1 91452659 91452983 -151211370 - LTR40a LTR ERVL -3 516 146 296 156 0 0 chr1 91452985 91453030 -151211323 - LTR40b LTR ERVL -417 45 1 417 341 122 34 chr1 91453453 91454077 -151210276 + L2 LINE L2 1729 2407 -907 194 247 71 47 chr1 91454933 91455018 -151209335 + L2 LINE L2 3227 3313 0 438 297 48 6 chr1 91455570 91455752 -151208601 - MIR SINE MIR -52 210 22 205 200 0 0 chr1 91457894 91457934 -151206419 + T-rich Low_complexity Low_complexity 1 40 0 270 0 0 0 chr1 91460643 91460673 -151203680 + (CA)n Simple_repeat Simple_repeat 2 31 0 252 0 0 0 chr1 91460672 91460700 -151203653 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 378 0 0 0 chr1 91461131 91461173 -151203180 + (CA)n Simple_repeat Simple_repeat 2 43 0 469 261 171 0 chr1 91461314 91461490 -151202863 + MIR SINE MIR 13 218 -44 22 35 0 0 chr1 91461682 91461711 -151202642 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr1 91462091 91462116 -151202237 + (A)n Simple_repeat Simple_repeat 1 25 0 454 305 80 7 chr1 91462123 91462274 -151202079 - MIR3 SINE MIR -5 203 42 24 0 0 0 chr1 91462572 91462596 -151201757 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr1 91464689 91464710 -151199643 + (ATG)n Simple_repeat Simple_repeat 2 22 0 408 55 0 0 chr1 91466685 91466740 -151197613 + (CA)n Simple_repeat Simple_repeat 2 56 0 208 232 18 0 chr1 91467593 91467649 -151196704 + (CA)n Simple_repeat Simple_repeat 1 57 0 231 270 40 0 chr1 91469508 91469582 -151194771 - MER117 DNA MER1_type -44 153 77 27 49 0 0 chr1 91469792 91469833 -151194520 + AT_rich Low_complexity Low_complexity 1 41 0 277 260 0 62 chr1 91470016 91470112 -151194241 - LTR33 LTR ERVL -158 363 274 424 316 32 0 chr1 91470169 91470327 -151194026 - LTR33 LTR ERVL -354 167 5 222 384 18 0 chr1 91470458 91470570 -151193783 - L2 LINE L2 -196 3076 2963 205 328 151 63 chr1 91470604 91470888 -151193465 - L2 LINE L2 -429 2885 2577 1616 215 8 14 chr1 91470936 91471303 -151193050 - MLT1A1 LTR MaLR 0 365 1 2287 253 24 25 chr1 91471303 91471893 -151192460 - MLT1A1-int LTR MaLR 0 1735 1147 3316 211 73 51 chr1 91471994 91472860 -151191493 - MLT1A1-int LTR MaLR -849 886 2 1782 175 8 40 chr1 91472863 91473237 -151191116 - MLT1A1 LTR MaLR -2 426 1 507 250 18 9 chr1 91473944 91474056 -151190297 - MIR SINE MIR -108 154 42 1039 198 73 42 chr1 91474195 91474508 -151189845 - L1ME1 LINE L1 -5 6161 5839 228 136 0 0 chr1 91474543 91474563 -151189790 + (T)n Simple_repeat Simple_repeat 1 20 -24 2673 59 3 0 chr1 91474563 91474903 -151189450 - L1PA7 LINE L1 0 6154 5814 228 136 0 0 chr1 91474903 91474926 -151189427 + (T)n Simple_repeat Simple_repeat 19 44 0 398 75 0 0 chr1 91474926 91474979 -151189374 - L1PA7 LINE L1 -320 5834 5782 1987 169 3 11 chr1 91475514 91475880 -151188473 + MLT1A1 LTR MaLR 1 363 -2 180 97 0 0 chr1 91476627 91476658 -151187695 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 656 266 31 21 chr1 91477591 91477783 -151186570 - MIR SINE MIR -43 219 26 455 309 26 17 chr1 91478527 91478768 -151185585 + HAL1b LINE L1 333 1659 -821 408 329 45 41 chr1 91480022 91480283 -151184070 + HAL1b LINE L1 105 364 -2077 2181 108 0 14 chr1 91480283 91480580 -151183773 - AluSg SINE Alu -17 293 1 408 329 45 41 chr1 91480580 91480775 -151183578 + HAL1b LINE L1 364 1607 -834 2167 119 0 0 chr1 91481077 91481387 -151182966 + AluSg SINE Alu 1 310 0 21 82 0 0 chr1 91481486 91481535 -151182818 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr1 91481626 91481650 -151182703 + AT_rich Low_complexity Low_complexity 1 24 0 494 331 78 70 chr1 91481734 91482275 -151182078 + L1ME LINE L1 5257 5801 -320 245 217 0 0 chr1 91482306 91482352 -151182001 + L1MC4 LINE L1 7382 7427 -615 422 242 21 0 chr1 91482353 91482448 -151181905 + L1MC4 LINE L1 7387 7483 -559 806 197 66 93 chr1 91482505 91482598 -151181755 + L1MC4 LINE L1 7487 7581 -461 1543 158 27 34 chr1 91482598 91482895 -151181458 + AluJb SINE Alu 1 295 -17 806 197 66 93 chr1 91482895 91483155 -151181198 + L1MC4 LINE L1 7581 7923 -119 2098 123 3 3 chr1 91483155 91483488 -151180865 - L1PA14 LINE L1 -1 6160 5828 806 197 66 93 chr1 91483488 91483605 -151180748 + L1MC4 LINE L1 7923 8042 0 204 40 0 0 chr1 91485367 91485392 -151178961 + (A)n Simple_repeat Simple_repeat 1 25 0 466 278 66 7 chr1 91485589 91485740 -151178613 + MIR SINE MIR 48 207 -55 378 0 0 0 chr1 91485782 91485824 -151178529 + (TA)n Simple_repeat Simple_repeat 1 42 0 603 131 0 0 chr1 91486497 91486581 -151177772 - AluSg/x SINE Alu -18 294 211 6944 58 0 0 chr1 91486606 91487528 -151176825 - L1PA5 LINE L1 -2 6152 5232 844 134 0 8 chr1 91487534 91487661 -151176692 - FLAM_C SINE Alu -17 126 1 777 274 31 41 chr1 91488286 91488578 -151175775 + L3b LINE CR1 1106 1394 -189 4431 216 57 17 chr1 91489020 91490358 -151173995 + Charlie1a DNA MER1_type 1 1455 0 434 347 6 35 chr1 91491241 91491411 -151172942 - LTR16A LTR ERVL -148 302 138 239 259 155 0 chr1 91491925 91491983 -151172370 - MIR3 SINE MIR -13 195 129 * 376 317 88 34 chr1 91491977 91492182 -151172171 - MIR SINE MIR 0 262 47 323 268 0 52 chr1 91492791 91492888 -151171465 - L1ME3A LINE L1 -15 6155 6064 187 288 29 88 chr1 91493287 91493457 -151170896 - L2 LINE L2 -817 2497 2338 231 204 0 0 chr1 91493606 91493655 -151170698 + GA-rich Low_complexity Low_complexity 2 50 0 233 352 92 39 chr1 91493989 91494370 -151169983 - L2 LINE L2 -2048 1266 866 210 286 174 10 chr1 91494632 91494730 -151169623 - MIR SINE MIR -68 194 81 2060 116 54 40 chr1 91494734 91495104 -151169249 - THE1C LTR MaLR 0 375 1 276 217 0 0 chr1 91496440 91496532 -151167821 + (TA)n Simple_repeat Simple_repeat 2 93 0 315 300 0 0 chr1 91496535 91496625 -151167728 - L1MC4 LINE L1 -1339 6703 6614 198 0 0 0 chr1 91496653 91496675 -151167678 + (TG)n Simple_repeat Simple_repeat 2 23 0 25 0 0 0 chr1 91497272 91497297 -151167056 + AT_rich Low_complexity Low_complexity 1 25 0 308 264 11 11 chr1 91497345 91497432 -151166921 + MIR3 SINE MIR 111 197 -11 24 0 0 0 chr1 91498161 91498185 -151166168 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr1 91498444 91498472 -151165881 + AT_rich Low_complexity Low_complexity 1 28 0 203 86 0 29 chr1 91498587 91498622 -151165731 + (CATA)n Simple_repeat Simple_repeat 2 35 0 1823 104 96 0 chr1 91498787 91499057 -151165296 + AluSx SINE Alu 14 309 -3 21 0 0 0 chr1 91499788 91499809 -151164544 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 91500809 91500842 -151163511 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr1 91501377 91501398 -151162955 + (TAA)n Simple_repeat Simple_repeat 1 21 0 273 330 132 51 chr1 91501740 91501937 -151162416 + MLT1J1 LTR MaLR 65 277 -169 * 342 244 13 0 chr1 91501931 91502009 -151162344 + MLT1J LTR MaLR 375 453 -58 265 316 0 0 chr1 91502113 91502192 -151162161 + GA-rich Low_complexity Low_complexity 2 80 0 644 313 6 0 chr1 91502429 91502605 -151161748 - MIR SINE MIR -25 237 61 256 274 133 0 chr1 91503430 91503543 -151160810 + MIR SINE MIR 135 262 0 3538 82 352 0 chr1 91504170 91504781 -151159572 - LTR12 LTR ERV1 0 826 1 208 304 89 54 chr1 91504827 91504939 -151159414 - L2 LINE L2 -9 3263 3148 505 324 80 5 chr1 91506103 91506316 -151158037 - MIR SINE MIR -24 238 10 2173 117 0 0 chr1 91506632 91506932 -151157421 - AluY SINE Alu -11 300 1 220 365 0 0 chr1 91507703 91507777 -151156576 - MIR SINE MIR -136 126 53 2511 50 0 0 chr1 91507860 91508159 -151156194 - AluY SINE Alu -12 299 1 287 263 0 0 chr1 91508536 91508593 -151155760 + MIR SINE MIR 47 103 -159 184 276 198 35 chr1 91508645 91508761 -151155592 + MIR SINE MIR 128 262 0 22 0 0 0 chr1 91509280 91509302 -151155051 + AT_rich Low_complexity Low_complexity 1 22 0 338 296 31 25 chr1 91510406 91510568 -151153785 - MLT1J LTR MaLR -143 368 206 574 267 124 45 chr1 91510568 91510770 -151153583 + MER20 DNA MER1_type 1 218 -1 239 214 54 0 chr1 91510891 91510947 -151153406 + MLT1J LTR MaLR 3 61 -450 404 158 0 53 chr1 91510959 91511035 -151153318 - MER20 DNA MER1_type -117 102 31 1149 182 13 38 chr1 91511150 91511176 -151153177 + MLT1E3 LTR MaLR 1 26 -598 1956 168 21 21 chr1 91511176 91511551 -151152802 + THE1C LTR MaLR 1 375 0 1149 182 13 38 chr1 91511551 91511760 -151152593 + MLT1E3 LTR MaLR 26 230 -394 1149 185 112 4 chr1 91511767 91511999 -151152354 + AluJb SINE Alu 1 257 -55 1440 223 129 9 chr1 91512015 91512356 -151151997 + MLT1E3 LTR MaLR 243 624 0 375 325 84 20 chr1 91512400 91512613 -151151740 - MIR SINE MIR -20 242 12 24 53 0 0 chr1 91512641 91512679 -151151674 + AT_rich Low_complexity Low_complexity 1 38 0 440 312 95 13 chr1 91513044 91513275 -151151078 - MIR SINE MIR -12 250 1 921 212 222 41 chr1 91516514 91517026 -151147327 + MLT1E1 LTR MaLR 1 653 -1 207 0 0 0 chr1 91518643 91518666 -151145687 + (TTG)n Simple_repeat Simple_repeat 2 24 0 796 265 94 76 chr1 91518758 91519271 -151145082 + LTR33A LTR ERVL 1 522 -1 686 325 40 0 chr1 91519487 91519761 -151144592 + Charlie2b DNA MER1_type 389 673 -2109 750 220 28 37 chr1 91519843 91520057 -151144296 + Charlie2a DNA MER1_type 1470 1681 -1181 1729 236 172 14 chr1 91520092 91520972 -151143381 + Charlie2a DNA MER1_type 1755 2773 -89 1764 196 25 40 chr1 91522102 91522143 -151142210 + MSTD LTR MaLR 1 41 -355 2085 108 11 0 chr1 91522143 91522471 -151141882 + AluSp SINE Alu 1 313 0 1764 196 25 40 chr1 91522471 91522831 -151141522 + MSTD LTR MaLR 41 396 0 299 262 168 9 chr1 91522964 91523071 -151141282 - MIR3 SINE MIR -4 204 81 456 302 64 23 chr1 91523151 91523323 -151141030 + MIR SINE MIR 28 206 -56 1390 196 35 28 chr1 91523919 91524205 -151140148 + AluJo SINE Alu 1 288 -24 2167 96 10 7 chr1 91525040 91525332 -151139021 - AluSc SINE Alu -16 293 1 424 130 43 0 chr1 91525726 91525795 -151138558 + MIR3 SINE MIR 103 174 -34 220 211 0 0 chr1 91525926 91525978 -151138375 + (TAA)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr1 91525983 91526004 -151138349 + AT_rich Low_complexity Low_complexity 1 21 0 622 250 69 6 chr1 91526841 91527001 -151137352 + MLT1B LTR MaLR 1 170 -220 22 56 0 0 chr1 91527129 91527165 -151137188 + AT_rich Low_complexity Low_complexity 1 36 0 803 237 16 0 chr1 91527282 91527468 -151136885 + MLT1B LTR MaLR 183 371 -19 393 239 113 168 chr1 91527484 91527815 -151136538 + L2 LINE L2 2835 3130 -183 1939 141 27 14 chr1 91527815 91528183 -151136170 - L1MA5 LINE L1 -2 6298 5926 393 239 113 168 chr1 91528183 91528357 -151135996 + L2 LINE L2 3130 3312 -1 2179 124 7 0 chr1 91528362 91528669 -151135684 - AluSx SINE Alu -3 309 1 22 0 0 0 chr1 91528679 91528701 -151135652 + AT_rich Low_complexity Low_complexity 1 22 0 281 240 90 30 chr1 91528775 91528875 -151135478 - L2 LINE L2 0 3313 3208 617 304 129 60 chr1 91529840 91530291 -151134062 - L3 LINE CR1 -13 1564 1083 1664 135 14 3 chr1 91530674 91530962 -151133391 - L1MA4 LINE L1 -7 6293 6003 212 329 109 75 chr1 91531068 91531390 -151132963 + L2 LINE L2 2932 3264 -8 900 291 83 14 chr1 91531735 91532327 -151132026 - L1ME3A LINE L1 -266 5904 5272 670 260 104 51 chr1 91532370 91532997 -151131356 - L1ME3A LINE L1 -1098 5048 4389 23 33 0 0 chr1 91533004 91533034 -151131319 + AT_rich Low_complexity Low_complexity 1 30 0 2007 106 29 0 chr1 91533110 91533384 -151130969 - AluSc SINE Alu -11 298 17 23 54 0 0 chr1 91533454 91533491 -151130862 + AT_rich Low_complexity Low_complexity 1 37 0 351 237 33 5 chr1 91533914 91534135 -151130218 + (TA)n Simple_repeat Simple_repeat 1 227 0 202 203 174 29 chr1 91534502 91534571 -151129782 - MIR SINE MIR -114 148 70 549 314 83 4 chr1 91535716 91535958 -151128395 - MIR SINE MIR 0 262 2 22 56 0 0 chr1 91536834 91536870 -151127483 + AT_rich Low_complexity Low_complexity 1 36 0 205 346 19 19 chr1 91536953 91537057 -151127296 - MIR SINE MIR -87 121 18 2240 119 0 3 chr1 91538455 91538757 -151125596 - AluSx SINE Alu -11 301 1 204 40 0 0 chr1 91541235 91541260 -151123093 + (TTG)n Simple_repeat Simple_repeat 3 27 0 203 204 23 0 chr1 91542895 91542939 -151121414 + (CAA)n Simple_repeat Simple_repeat 1 45 0 464 345 126 34 chr1 91544419 91545046 -151119307 + L2 LINE L2 2584 3254 -18 2300 104 0 0 chr1 91545689 91545986 -151118367 - AluSc SINE Alu -12 297 1 1835 194 111 39 chr1 91546328 91546813 -151117540 - MLT2B1 LTR ERVL 0 520 1 738 333 44 13 chr1 91547907 91548225 -151116128 + L3 LINE CR1 1250 1577 0 363 207 17 9 chr1 91548233 91548349 -151116004 + CT-rich Low_complexity Low_complexity 3 119 0 276 299 54 34 chr1 91549428 91549575 -151114778 + L2 LINE L2 2282 2431 -883 210 232 18 18 chr1 91549709 91549765 -151114588 + L2 LINE L2 3217 3272 0 319 290 43 58 chr1 91550522 91550660 -151113693 + L2 LINE L2 3178 3313 0 32 0 0 0 chr1 91551336 91551368 -151112985 + AT_rich Low_complexity Low_complexity 1 32 0 256 316 44 9 chr1 91551435 91551549 -151112804 - MIR SINE MIR -119 143 26 411 38 0 0 chr1 91551562 91551615 -151112738 + (TG)n Simple_repeat Simple_repeat 2 54 0 380 294 87 56 chr1 91552305 91552536 -151111817 - MIR SINE MIR -2 260 23 1926 139 35 37 chr1 91552757 91553132 -151111221 - THE1C LTR MaLR -1 374 1 220 136 99 20 chr1 91553832 91553891 -151110462 + MIR SINE MIR 88 141 -67 28 71 0 0 chr1 91554310 91554366 -151109987 + AT_rich Low_complexity Low_complexity 1 56 0 857 253 109 1 chr1 91554565 91554859 -151109494 - L1ME4a LINE L1 -281 5840 5517 307 272 69 35 chr1 91555011 91555184 -151109169 - L1ME4a LINE L1 -812 5334 5156 256 274 133 0 chr1 91556151 91556264 -151108089 + MIR SINE MIR 135 262 0 3538 82 352 0 chr1 91556891 91557502 -151106851 - LTR12 LTR ERV1 0 826 1 208 304 89 54 chr1 91557548 91557660 -151106693 - L2 LINE L2 -9 3263 3148 505 324 80 5 chr1 91558824 91559037 -151105316 - MIR SINE MIR -24 238 10 2173 117 0 0 chr1 91559353 91559653 -151104700 - AluY SINE Alu -11 300 1 220 365 0 0 chr1 91560424 91560498 -151103855 - MIR SINE MIR -136 126 53 2529 50 0 0 chr1 91560581 91560882 -151103471 - AluY SINE Alu -10 301 1 287 263 0 0 chr1 91561259 91561316 -151103037 + MIR SINE MIR 47 103 -159 184 276 198 35 chr1 91561368 91561484 -151102869 + MIR SINE MIR 128 262 0 22 0 0 0 chr1 91562003 91562025 -151102328 + AT_rich Low_complexity Low_complexity 1 22 0 346 284 37 31 chr1 91563129 91563291 -151101062 - MLT1J LTR MaLR -143 368 206 555 272 124 45 chr1 91563291 91563493 -151100860 + MER20 DNA MER1_type 1 218 -1 239 214 54 0 chr1 91563614 91563670 -151100683 + MLT1J LTR MaLR 3 61 -450 404 158 0 53 chr1 91563682 91563758 -151100595 - MER20 DNA MER1_type -117 102 31 1149 182 13 38 chr1 91563873 91563899 -151100454 + MLT1E3 LTR MaLR 1 26 -598 1956 168 21 21 chr1 91563899 91564274 -151100079 + THE1C LTR MaLR 1 375 0 1149 182 13 38 chr1 91564274 91564483 -151099870 + MLT1E3 LTR MaLR 26 230 -394 1165 184 107 4 chr1 91564490 91564723 -151099630 + AluJb SINE Alu 1 257 -55 1440 223 129 9 chr1 91564739 91565080 -151099273 + MLT1E3 LTR MaLR 243 624 0 375 326 89 21 chr1 91565124 91565344 -151099009 - MIR SINE MIR -20 242 2 24 53 0 0 chr1 91565365 91565403 -151098950 + AT_rich Low_complexity Low_complexity 1 38 0 440 312 95 13 chr1 91565768 91565999 -151098354 - MIR SINE MIR -12 250 1 921 212 222 41 chr1 91569238 91569750 -151094603 + MLT1E1 LTR MaLR 1 653 -1 207 0 0 0 chr1 91571367 91571390 -151092963 + (TTG)n Simple_repeat Simple_repeat 2 24 0 796 265 94 76 chr1 91571482 91571995 -151092358 + LTR33A LTR ERVL 1 522 -1 702 321 40 0 chr1 91572211 91572485 -151091868 + Charlie2b DNA MER1_type 389 673 -2109 750 220 28 37 chr1 91572567 91572781 -151091572 + Charlie2a DNA MER1_type 1470 1681 -1181 1729 236 172 14 chr1 91572816 91573696 -151090657 + Charlie2a DNA MER1_type 1755 2773 -89 1764 196 25 40 chr1 91574828 91574869 -151089484 + MSTD LTR MaLR 1 41 -355 2070 112 11 0 chr1 91574869 91575197 -151089156 + AluSp SINE Alu 1 313 0 1764 196 25 40 chr1 91575197 91575557 -151088796 + MSTD LTR MaLR 41 396 0 299 262 168 9 chr1 91575690 91575797 -151088556 - MIR3 SINE MIR -4 204 81 456 302 64 23 chr1 91575877 91576049 -151088304 + MIR SINE MIR 28 206 -56 1390 196 35 28 chr1 91576645 91576931 -151087422 + AluJo SINE Alu 1 288 -24 2176 96 10 7 chr1 91577767 91578060 -151086293 - AluSc SINE Alu -15 294 1 424 130 43 0 chr1 91578455 91578524 -151085829 + MIR3 SINE MIR 103 174 -34 220 211 0 0 chr1 91578655 91578707 -151085646 + (TAA)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr1 91578712 91578733 -151085620 + AT_rich Low_complexity Low_complexity 1 21 0 622 250 69 6 chr1 91579570 91579730 -151084623 + MLT1B LTR MaLR 1 170 -220 22 56 0 0 chr1 91579858 91579894 -151084459 + AT_rich Low_complexity Low_complexity 1 36 0 803 237 16 0 chr1 91580011 91580197 -151084156 + MLT1B LTR MaLR 183 371 -19 393 239 113 168 chr1 91580213 91580544 -151083809 + L2 LINE L2 2835 3130 -183 1939 141 27 14 chr1 91580544 91580912 -151083441 - L1MA5 LINE L1 -2 6298 5926 393 239 113 168 chr1 91580912 91581086 -151083267 + L2 LINE L2 3130 3312 -1 2179 124 7 0 chr1 91581091 91581398 -151082955 - AluSx SINE Alu -3 309 1 22 0 0 0 chr1 91581408 91581430 -151082923 + AT_rich Low_complexity Low_complexity 1 22 0 281 240 90 30 chr1 91581504 91581604 -151082749 - L2 LINE L2 0 3313 3208 617 304 129 60 chr1 91582569 91583020 -151081333 - L3 LINE CR1 -13 1564 1083 1664 135 14 3 chr1 91583403 91583691 -151080662 - L1MA4 LINE L1 -7 6293 6003 212 329 109 75 chr1 91583797 91584119 -151080234 + L2 LINE L2 2932 3264 -8 900 291 83 14 chr1 91584464 91585056 -151079297 - L1ME3A LINE L1 -266 5904 5272 658 263 102 51 chr1 91585099 91585727 -151078626 - L1ME3A LINE L1 -1098 5048 4389 1998 106 29 0 chr1 91585840 91586113 -151078240 - AluSc SINE Alu -12 297 17 23 54 0 0 chr1 91586183 91586220 -151078133 + AT_rich Low_complexity Low_complexity 1 37 0 351 237 33 5 chr1 91586643 91586864 -151077489 + (TA)n Simple_repeat Simple_repeat 1 227 0 202 203 174 29 chr1 91587231 91587300 -151077053 - MIR SINE MIR -114 148 70 549 314 83 4 chr1 91588445 91588687 -151075666 - MIR SINE MIR 0 262 2 22 56 0 0 chr1 91589563 91589599 -151074754 + AT_rich Low_complexity Low_complexity 1 36 0 205 346 19 19 chr1 91589682 91589786 -151074567 - MIR SINE MIR -87 121 18 2224 123 0 3 chr1 91591185 91591487 -151072866 - AluSx SINE Alu -11 301 1 204 40 0 0 chr1 91593965 91593990 -151070363 + (TTG)n Simple_repeat Simple_repeat 3 27 0 203 204 23 0 chr1 91595624 91595668 -151068685 + (CAA)n Simple_repeat Simple_repeat 1 45 0 464 346 126 33 chr1 91597147 91597773 -151066580 + L2 LINE L2 2584 3254 -18 2308 104 0 0 chr1 91598416 91598714 -151065639 - AluSc SINE Alu -11 298 1 1864 192 111 39 chr1 91599056 91599541 -151064812 - MLT2B1 LTR ERVL 0 520 1 738 333 44 13 chr1 91600635 91600953 -151063400 + L3 LINE CR1 1250 1577 0 363 207 17 9 chr1 91600961 91601077 -151063276 + CT-rich Low_complexity Low_complexity 3 119 0 284 293 54 34 chr1 91602156 91602303 -151062050 + L2 LINE L2 2282 2431 -883 210 232 18 18 chr1 91602437 91602493 -151061860 + L2 LINE L2 3217 3272 0 304 297 43 58 chr1 91603250 91603388 -151060965 + L2 LINE L2 3178 3313 0 32 0 0 0 chr1 91604065 91604097 -151060256 + AT_rich Low_complexity Low_complexity 1 32 0 256 316 44 9 chr1 91604164 91604278 -151060075 - MIR SINE MIR -119 143 26 393 39 0 0 chr1 91604291 91604342 -151060011 + (TG)n Simple_repeat Simple_repeat 2 52 0 380 294 87 56 chr1 91605033 91605264 -151059089 - MIR SINE MIR -2 260 23 1926 139 35 37 chr1 91605485 91605860 -151058493 - THE1C LTR MaLR -1 374 1 220 136 99 20 chr1 91606560 91606619 -151057734 + MIR SINE MIR 88 141 -67 28 71 0 0 chr1 91607038 91607094 -151057259 + AT_rich Low_complexity Low_complexity 1 56 0 857 253 109 1 chr1 91607293 91607587 -151056766 - L1ME4a LINE L1 -281 5840 5517 341 262 77 56 chr1 91607739 91607972 -151056381 - L1ME4a LINE L1 -812 5334 5097 359 279 132 39 chr1 91608130 91608517 -151055836 - HAL1 LINE L1 -77 2430 2008 1625 201 164 25 chr1 91608745 91609183 -151055170 - MLT1D LTR MaLR -2 503 5 709 278 76 18 chr1 91609315 91609538 -151054815 + MIR SINE MIR 1 236 -26 684 259 23 9 chr1 91609540 91609756 -151054597 - HAL1 LINE L1 -890 1617 1399 1221 303 43 5 chr1 91610035 91610478 -151053875 - LTR16B LTR ERVL -2 462 3 317 217 0 0 chr1 91611185 91611245 -151053108 - HERV16 LTR ERVL -612 4384 4325 1828 324 121 32 chr1 91611327 91611912 -151052441 - HERV16 LTR ERVL -3459 1537 1006 1080 205 41 108 chr1 91611912 91612327 -151052026 - MLT1B LTR MaLR 0 390 4 1828 324 121 32 chr1 91612327 91613061 -151051292 - HERV16 LTR ERVL -3990 1006 100 1550 265 55 11 chr1 91613150 91613584 -151050769 - LTR16B LTR ERVL -11 453 1 356 40 20 0 chr1 91614452 91614502 -151049851 + (TG)n Simple_repeat Simple_repeat 2 52 0 308 319 83 24 chr1 91615153 91615322 -151049031 - L2 LINE L2 0 3313 3135 1691 164 7 16 chr1 91615647 91615951 -151048402 + AluSx SINE Alu 1 301 -11 210 71 0 0 chr1 91616533 91616561 -151047792 + (TC)n Simple_repeat Simple_repeat 1 28 0 210 143 0 0 chr1 91616560 91616595 -151047758 + (CA)n Simple_repeat Simple_repeat 1 35 0 269 204 0 0 chr1 91618107 91618156 -151046197 + L2 LINE L2 3265 3313 0 226 310 88 18 chr1 91620766 91620879 -151043474 - L2 LINE L2 0 3313 3193 318 276 126 88 chr1 91621340 91621984 -151042369 + L1ME LINE L1 4126 4793 -1353 355 202 34 9 chr1 91622401 91622570 -151041783 + L1ME LINE L1 5289 5464 -702 261 256 0 26 chr1 91622731 91622809 -151041544 + L1P3 LINE L1 5695 5770 -384 309 282 14 0 chr1 91622898 91622969 -151041384 + MLT1H1 LTR MaLR 396 467 -88 438 345 68 5 chr1 91623504 91623695 -151040658 - L3 LINE CR1 -353 1224 1022 21 0 0 0 chr1 91624600 91624621 -151039732 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr1 91625135 91625173 -151039180 + AT_rich Low_complexity Low_complexity 1 38 0 3686 120 30 8 chr1 91625415 91625774 -151038579 - L1PB1 LINE L1 -3 6148 5769 285 75 0 0 chr1 91625774 91625814 -151038539 + (TA)n Simple_repeat Simple_repeat 2 41 0 3686 120 30 8 chr1 91625814 91626044 -151038309 - L1PB1 LINE L1 -382 5769 5546 197 329 63 38 chr1 91627093 91627172 -151037181 + MIR SINE MIR 36 116 -92 198 71 0 0 chr1 91627498 91627526 -151036827 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 579 264 35 98 chr1 91627526 91627868 -151036485 - L2 LINE L2 -13 3300 2980 2645 97 92 5 chr1 91627868 91628282 -151036071 + LTR7 LTR ERV1 1 450 0 19825 101 61 21 chr1 91628287 91631446 -151032907 + HERVH LTR ERV1 6 3290 -4423 3218 111 18 6 chr1 91631437 91631932 -151032421 + HERVH LTR ERV1 3493 3993 -3720 * 8159 108 7 2 chr1 91631996 91633144 -151031209 + HERVH LTR ERV1 3993 5146 -2567 1357 146 18 0 chr1 91633145 91633364 -151030989 + HERVH LTR ERV1 5597 5819 -1894 * 2262 113 47 16 chr1 91633362 91633742 -151030611 + HERVH LTR ERV1 7322 7713 0 2526 90 100 7 chr1 91633742 91634152 -151030201 + LTR7 LTR ERV1 1 448 -2 1772 308 159 42 chr1 91634160 91635457 -151028896 - L2 LINE L2 -337 2977 1530 516 232 104 69 chr1 91636322 91636737 -151027616 - MLT1H LTR MaLR 0 542 129 1780 169 3 13 chr1 91636834 91637141 -151027212 - AluJb SINE Alu -8 304 1 458 319 66 86 chr1 91637234 91637535 -151026818 + L2 LINE L2 2972 3266 -6 27 0 0 0 chr1 91638946 91638973 -151025380 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr1 91640390 91640414 -151023939 + AT_rich Low_complexity Low_complexity 1 24 0 350 264 0 38 chr1 91641332 91641438 -151022915 + Charlie7 DNA MER1_type 7 108 -2504 232 216 81 68 chr1 91641931 91642005 -151022348 + MER103 DNA DNA 45 119 -47 610 354 76 29 chr1 91642243 91642811 -151021542 - L2 LINE L2 -8 3264 2653 302 373 45 0 chr1 91642847 91642957 -151021396 + L2 LINE L2 3158 3272 0 262 296 14 0 chr1 91642969 91643040 -151021313 - L2 LINE L2 -679 2635 2564 21 0 0 0 chr1 91643359 91643380 -151020973 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 91643446 91643468 -151020885 + AT_rich Low_complexity Low_complexity 1 22 0 1217 217 76 63 chr1 91643496 91643878 -151020475 + MLT1B LTR MaLR 1 387 -3 1233 225 77 15 chr1 91644364 91644688 -151019665 - MER2 DNA MER2_type 0 344 1 25 0 0 0 chr1 91644766 91644791 -151019562 + AT_rich Low_complexity Low_complexity 1 25 0 3822 105 84 82 chr1 91645618 91646401 -151017952 + LTR1 LTR ERV1 1 785 0 9250 99 5 17 chr1 91646551 91647845 -151016508 - HSMAR1 DNA Mariner 0 1287 9 2506 84 0 0 chr1 91647893 91648201 -151016152 - AluSp SINE Alu -5 308 1 1788 163 3 16 chr1 91648351 91648658 -151015695 - AluJb SINE Alu -9 303 1 492 33 66 0 chr1 91648937 91649028 -151015325 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 367 228 50 10 chr1 91649844 91649945 -151014408 + MER103 DNA DNA 5 109 -57 659 123 0 9 chr1 91650174 91650288 -151014065 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 2480 150 39 31 chr1 91650295 91650829 -151013524 - MER41B LTR ERV1 -56 579 5 371 39 39 0 chr1 91650838 91650890 -151013463 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 241 354 35 42 chr1 91653333 91653477 -151010876 - MIR3 SINE MIR -1 207 65 248 256 120 60 chr1 91655968 91656085 -151008268 - MIR SINE MIR -46 216 93 285 316 110 67 chr1 91657242 91657451 -151006902 - MIR SINE MIR -29 233 16 183 343 29 14 chr1 91659116 91659186 -151005167 + L2 LINE L2 2573 2643 -671 301 288 50 50 chr1 91659730 91659869 -151004484 + MER91C DNA MER1_type 2 140 0 241 270 230 0 chr1 91659869 91659969 -151004384 + MIR SINE MIR 67 189 -73 187 284 104 37 chr1 91660008 91660142 -151004211 + L2 LINE L2 3171 3313 0 234 167 0 0 chr1 91660156 91660198 -151004155 + L2 LINE L2 3218 3259 -13 2057 85 3 34 chr1 91660611 91660969 -151003384 - AluY SINE Alu 0 349 1 418 242 183 46 chr1 91661880 91662033 -151002320 + MIR SINE MIR 62 235 -27 22 35 0 0 chr1 91662089 91662118 -151002235 + AT_rich Low_complexity Low_complexity 1 29 0 235 239 62 53 chr1 91664016 91664129 -151000224 - MIR SINE MIR -58 204 91 229 339 54 27 chr1 91664668 91664780 -150999573 - MIR SINE MIR -73 135 21 207 314 145 41 chr1 91664958 91665130 -150999223 - MIR SINE MIR -16 246 57 1650 156 173 19 chr1 91665410 91665781 -150998572 + MSTA LTR MaLR 1 428 0 219 261 0 0 chr1 91665806 91665852 -150998501 - L2 LINE L2 -45 3227 3182 2436 189 90 4 chr1 91666268 91666724 -150997629 + MLT2B3 LTR ERVL 1 495 -59 258 32 0 0 chr1 91666779 91666810 -150997543 + (TA)n Simple_repeat Simple_repeat 2 32 0 1307 167 30 63 chr1 91666889 91667158 -150997195 - AluJo SINE Alu -38 274 15 493 153 24 12 chr1 91667160 91667245 -150997108 + MER8 DNA MER2_type 149 234 -5 330 26 0 0 chr1 91667250 91667289 -150997064 + (TG)n Simple_repeat Simple_repeat 2 40 0 321 401 33 0 chr1 91667433 91667585 -150996768 - L2 LINE L2 -219 3053 2897 646 248 45 56 chr1 91669130 91669315 -150995038 + MIR SINE MIR 3 192 -70 1914 171 77 34 chr1 91669315 91669729 -150994624 + Tigger2a DNA MER2_type 2 433 -1 646 248 45 56 chr1 91669729 91669774 -150994579 + MIR SINE MIR 192 236 -26 670 286 103 52 chr1 91669981 91670496 -150993857 + MLT1H LTR MaLR 48 595 0 225 366 42 21 chr1 91670585 91670727 -150993626 + L2 LINE L2 2599 2743 -571 283 306 78 92 chr1 91670957 91671238 -150993115 + L2 LINE L2 2992 3268 -4 940 253 29 22 chr1 91671523 91671800 -150992553 - MLT1D LTR MaLR -116 389 111 2055 196 44 53 chr1 91671822 91672327 -150992026 - MLT1D LTR MaLR -3 502 3 342 0 0 0 chr1 91672569 91672607 -150991746 + (CA)n Simple_repeat Simple_repeat 1 38 0 28 48 0 0 chr1 91672810 91672852 -150991501 + AT_rich Low_complexity Low_complexity 1 42 0 243 292 49 32 chr1 91672901 91673086 -150991267 + L1M3 LINE L1 5386 5573 -610 236 257 21 79 chr1 91673201 91673341 -150991012 + L1ME LINE L1 5689 5820 -301 601 308 73 17 chr1 91673454 91673688 -150990665 - MIR SINE MIR -10 252 6 * 756 317 57 38 chr1 91673686 91674058 -150990295 - L2 LINE L2 0 3313 2935 2517 34 34 3 chr1 91674281 91674579 -150989774 + AluY SINE Alu 1 307 -4 23 0 0 0 chr1 91675473 91675496 -150988857 + AT_rich Low_complexity Low_complexity 1 23 0 234 246 33 0 chr1 91676966 91677027 -150987326 - MLT1K LTR MaLR -7 581 519 247 251 177 79 chr1 91677536 91677739 -150986614 - MIR SINE MIR -20 242 20 259 156 47 0 chr1 91677887 91677951 -150986402 + GA-rich Low_complexity Low_complexity 6 72 0 23 0 0 0 chr1 91678233 91678256 -150986097 + AT_rich Low_complexity Low_complexity 1 23 0 1371 215 7 36 chr1 91678478 91678785 -150985568 + AluJo SINE Alu 1 298 -14 675 210 0 16 chr1 91680188 91680312 -150984041 + FLAM_A SINE Alu 1 122 -11 334 284 62 68 chr1 91680320 91680496 -150983857 + MIR SINE MIR 4 178 -84 533 277 20 0 chr1 91680727 91680875 -150983478 + LTR16B LTR ERVL 1 151 -313 548 173 90 3 chr1 91680885 91681086 -150983267 + MLT2D LTR ERVL 1 291 -123 273 142 0 24 chr1 91681188 91681248 -150983105 + MLT2D LTR ERVL 370 412 -2 589 286 17 11 chr1 91681258 91681433 -150982920 + LTR16B LTR ERVL 167 342 -122 2480 62 0 0 chr1 91681545 91681851 -150982502 - AluY SINE Alu -5 306 1 209 190 103 17 chr1 91682818 91682876 -150981477 + MIR SINE MIR 105 167 -95 785 183 32 16 chr1 91683131 91683317 -150981036 - MER53 DNA DNA 0 189 1 2366 74 0 0 chr1 91683522 91683806 -150980547 + AluY SINE Alu 1 311 0 244 0 0 0 chr1 91683806 91683833 -150980520 + (TAAAA)n Simple_repeat Simple_repeat 2 175 0 226 224 20 0 chr1 91684273 91684322 -150980031 - HSMAR1 DNA Mariner -491 796 747 431 313 75 0 chr1 91684451 91684611 -150979742 + L1ME3A LINE L1 5477 5648 -514 310 220 35 165 chr1 91684651 91684778 -150979575 + MER112 DNA MER1_type 81 174 -86 378 0 0 0 chr1 91684778 91684820 -150979533 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 310 220 35 165 chr1 91684820 91684892 -150979461 + MER112 DNA MER1_type 174 254 -6 286 321 69 24 chr1 91684917 91685163 -150979190 + L1ME3A LINE L1 5689 5945 -225 21 36 0 0 chr1 91685534 91685562 -150978791 + AT_rich Low_complexity Low_complexity 1 28 0 406 336 57 78 chr1 91685697 91686030 -150978323 + L2 LINE L2 2945 3270 -2 217 301 15 98 chr1 91686625 91686758 -150977595 - L2 LINE L2 -15 3257 3136 378 335 121 19 chr1 91688192 91688398 -150975955 + L3b LINE CR1 1354 1580 -3 411 250 86 21 chr1 91689054 91689194 -150975159 - MER45C DNA AcHobo -44 909 761 356 261 117 0 chr1 91689206 91689317 -150975036 - MER45C DNA AcHobo -348 605 482 957 246 100 49 chr1 91689381 91689710 -150974643 - MER45C DNA AcHobo -607 346 1 1187 60 12 0 chr1 91690092 91690260 -150974093 + (AATAG)n Simple_repeat Simple_repeat 2 171 0 343 292 110 38 chr1 91690437 91690786 -150973567 - L1ME LINE L1 -504 5658 5284 402 290 71 56 chr1 91691033 91691637 -150972716 - L1MEd LINE L1 -971 1519 818 233 241 0 0 chr1 91691726 91691780 -150972573 - MER69 DNA AcHobo -1 2525 2472 210 167 0 0 chr1 91694327 91694363 -150969990 + T-rich Low_complexity Low_complexity 1 36 0 185 200 36 0 chr1 91694664 91694719 -150969634 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1096 144 31 15 chr1 91694791 91694986 -150969367 + Tigger1 DNA MER2_type 1964 2161 -257 745 253 31 31 chr1 91695275 91695504 -150968849 - MIR SINE MIR 0 262 34 301 342 88 0 chr1 91696081 91696195 -150968158 - L2 LINE L2 -10 3262 3139 346 324 58 0 chr1 91696469 91696608 -150967745 + MER117 DNA MER1_type 2 148 -49 2198 92 0 0 chr1 91698028 91698311 -150966042 - AluY SINE Alu -8 303 21 255 294 176 18 chr1 91699381 91699551 -150964802 + MIR SINE MIR 56 252 -10 199 317 37 37 chr1 91700450 91700532 -150963821 + MIR SINE MIR 5 86 -176 181 315 154 43 chr1 91700738 91700900 -150963453 + L2 LINE L2 2976 3155 -117 1350 154 7 92 chr1 91701052 91701324 -150963029 + AluSx SINE Alu 43 291 -21 23 0 0 0 chr1 91701342 91701365 -150962988 + AT_rich Low_complexity Low_complexity 1 23 0 200 209 0 15 chr1 91701858 91701902 -150962451 + (TA)n Simple_repeat Simple_repeat 1 45 -21 13297 140 57 10 chr1 91701902 91704212 -150960141 + Tigger1 DNA MER2_type 1 2418 0 200 209 0 15 chr1 91704212 91704234 -150960119 + (TA)n Simple_repeat Simple_repeat 45 66 0 1106 117 10 51 chr1 91754274 91754470 -150909883 + THE1B LTR MaLR 177 364 0 11761 91 11 2 chr1 91754470 91756036 -150908317 + THE1B-int LTR MaLR 1 1580 0 2159 109 53 34 chr1 91756036 91756393 -150907960 + THE1B LTR MaLR 1 364 0 180 118 147 0 chr1 91756398 91756432 -150907921 - L2 LINE L2 -15 3257 3219 * 464 271 126 25 chr1 91756403 91756602 -150907751 - MIR SINE MIR -15 247 29 940 247 38 68 chr1 91756923 91757291 -150907062 - MLT1A2 LTR MaLR 0 374 18 365 350 57 33 chr1 91757315 91757646 -150906707 + HAL1 LINE L1 1115 1453 -1054 1938 129 0 0 chr1 91757875 91758138 -150906215 - AluSx SINE Alu -49 263 1 1441 129 44 0 chr1 91758332 91758557 -150905796 - LTR12 LTR ERV1 0 714 480 308 245 10 0 chr1 91758558 91758656 -150905697 - LTR30 LTR ERV1 -80 642 544 1435 129 32 97 chr1 91758657 91758967 -150905386 - pTR5 LTR ERV1 -414 2024 1735 243 237 50 59 chr1 91758990 91759135 -150905218 + MLT1J2 LTR MaLR 247 446 -4 337 250 11 0 chr1 91759275 91759363 -150904990 + MLT1J2 LTR MaLR 17 105 -345 286 214 179 45 chr1 91759473 91759585 -150904768 + MLT1J1 LTR MaLR 285 411 -35 357 284 80 53 chr1 91759633 91759994 -150904359 + L1 LINE L1 2716 3093 -3053 8078 79 2 1 chr1 91759994 91761886 -150902467 + L1PA7 LINE L1 4255 6154 0 357 284 80 53 chr1 91761886 91761961 -150902392 + L1 LINE L1 3093 3164 -2982 568 239 0 42 chr1 91762023 91762165 -150902188 - MIR SINE MIR -21 241 106 300 296 105 19 chr1 91762167 91762329 -150902024 + L1 LINE L1 3176 3351 -2795 1966 100 3 52 chr1 91762348 91762638 -150901715 - AluSp SINE Alu -37 276 1 613 216 17 0 chr1 91762773 91762889 -150901464 + FLAM_C SINE Alu 1 118 -15 40 37 0 0 chr1 91762889 91762943 -150901410 + AT_rich Low_complexity Low_complexity 1 54 0 431 186 194 8 chr1 91763388 91763512 -150900841 + MLT1E LTR MaLR 2 148 -445 271 265 306 10 chr1 91763527 91763723 -150900630 + MLT1E LTR MaLR 119 372 -221 214 383 77 34 chr1 91763767 91763976 -150900377 + MIR SINE MIR 28 245 -17 183 229 0 0 chr1 91764161 91764222 -150900131 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 231 330 0 43 chr1 91764871 91764986 -150899367 - MIR SINE MIR -90 172 63 410 303 66 13 chr1 91765090 91765242 -150899111 + MIR SINE MIR 47 206 -56 24 0 0 0 chr1 91766049 91766073 -150898280 + AT_rich Low_complexity Low_complexity 1 24 0 1728 168 3 11 chr1 91767553 91767864 -150896489 - AluJo SINE Alu 0 309 1 211 239 60 15 chr1 91767872 91767939 -150896414 + MIR SINE MIR 124 193 -69 2183 136 24 21 chr1 91768184 91768558 -150895795 - THE1C LTR MaLR 0 375 1 1812 150 55 30 chr1 91769033 91769399 -150894954 - THE1C LTR MaLR 0 375 1 777 240 73 0 chr1 91769491 91769670 -150894683 - MIR SINE MIR -65 197 6 637 320 13 22 chr1 91769734 91769962 -150894391 - MIR SINE MIR -32 230 5 3414 58 2 0 chr1 91772556 91772989 -150891364 + L1PA6 LINE L1 5721 6154 0 2455 100 20 3 chr1 91773056 91773405 -150890948 - THE1A LTR MaLR 0 355 1 11247 99 10 23 chr1 91773405 91775006 -150889347 - THE1A-int LTR MaLR 0 1580 1 2580 104 0 0 chr1 91775006 91775361 -150888992 - THE1A LTR MaLR 0 355 1 182 337 18 86 chr1 91776476 91776639 -150887714 + MER5B DNA MER1_type 7 158 -20 252 304 43 35 chr1 91776699 91776814 -150887539 + L2 LINE L2 3152 3267 -5 333 314 21 31 chr1 91777175 91777369 -150886984 - L1MEd LINE L1 -5488 631 440 276 91 0 0 chr1 91777488 91777532 -150886821 + (TC)n Simple_repeat Simple_repeat 2 45 0 191 320 0 0 chr1 91777873 91777923 -150886430 + L2 LINE L2 3255 3304 -9 206 350 0 12 chr1 91778811 91778891 -150885462 + CT-rich Low_complexity Low_complexity 3 81 0 526 99 0 12 chr1 91779152 91779233 -150885120 - MADE1 DNA Mariner 0 80 1 462 259 98 17 chr1 91779237 91779411 -150884942 - MIR SINE MIR -3 259 72 2967 107 20 7 chr1 91780423 91780861 -150883492 + MLT2A1 LTR ERVL 1 444 0 26 30 0 0 chr1 91781348 91781381 -150882972 + AT_rich Low_complexity Low_complexity 1 33 0 182 286 0 0 chr1 91781453 91781502 -150882851 + L2 LINE L2 3264 3312 -1 51 70 0 0 chr1 91782612 91782712 -150881641 + AT_rich Low_complexity Low_complexity 1 100 0 460 244 99 54 chr1 91785797 91786039 -150878314 - L2 LINE L2 -871 2443 2191 673 157 0 0 chr1 91786244 91786346 -150878007 + FRAM SINE Alu 21 122 -54 189 234 0 0 chr1 91786931 91786995 -150877358 + CT-rich Low_complexity Low_complexity 4 67 0 227 284 74 53 chr1 91788100 91788195 -150876158 - L2 LINE L2 -30 3242 3146 310 340 158 5 chr1 91789083 91789292 -150875061 + MIR SINE MIR 12 252 -10 416 351 57 23 chr1 91789571 91789870 -150874483 + LTR16C LTR ERVL 89 397 -94 788 261 125 87 chr1 91789883 91790414 -150873939 + LTR41 LTR ERVL 1 561 -212 477 0 0 0 chr1 91790414 91790467 -150873886 + (TG)n Simple_repeat Simple_repeat 1 53 0 788 261 125 87 chr1 91790467 91790568 -150873785 + LTR41 LTR ERVL 561 657 -116 1652 146 146 3 chr1 91790833 91791135 -150873218 + MSTA LTR MaLR 1 345 -83 817 134 17 28 chr1 91791135 91791314 -150873039 + CT-rich Low_complexity Low_complexity 3 179 0 198 143 0 0 chr1 91791333 91791368 -150872985 + (TTCG)n Simple_repeat Simple_repeat 2 36 0 1883 171 0 10 chr1 91791370 91791675 -150872678 - AluJb SINE Alu -10 302 1 508 97 0 0 chr1 91791675 91791747 -150872606 + MSTA LTR MaLR 357 428 0 231 228 0 18 chr1 91791747 91791804 -150872549 + LTR41 LTR ERVL 717 772 -1 508 164 0 0 chr1 91791804 91791877 -150872476 + LTR16C LTR ERVL 418 490 -1 999 226 0 0 chr1 91792094 91792280 -150872073 + MER5A DNA MER1_type 1 186 -3 1489 223 25 25 chr1 91792647 91793006 -150871347 + MLT1A1 LTR MaLR 1 359 -6 409 335 41 57 chr1 91793499 91793840 -150870513 + HERVL LTR ERVL 3940 4349 -1415 212 231 0 31 chr1 91794161 91794226 -150870127 + (CATA)n Simple_repeat Simple_repeat 4 66 0 515 315 64 28 chr1 91794385 91794636 -150869717 - MIR SINE MIR 0 262 3 1170 247 54 65 chr1 91796120 91796581 -150867772 + L1MCb LINE L1 1 456 -5589 970 222 26 9 chr1 91797761 91797991 -150866362 - MER58 DNA MER1_type -2185 235 2 231 88 0 0 chr1 91798018 91798052 -150866301 + (TG)n Simple_repeat Simple_repeat 1 34 0 491 270 99 23 chr1 91799213 91799388 -150864965 + MLT1I LTR MaLR 251 407 -2 234 335 85 28 chr1 91800118 91800294 -150864059 - MIR SINE MIR -1 261 76 497 237 26 0 chr1 91801143 91801257 -150863096 + MIR SINE MIR 57 173 -89 1287 211 42 66 chr1 91802206 91802586 -150861767 + MLT1A2 LTR MaLR 4 374 0 189 74 0 0 chr1 91803267 91803294 -150861059 + (GGAAA)n Simple_repeat Simple_repeat 4 30 0 1390 146 68 118 chr1 91803615 91803998 -150860355 - MLT1A1 LTR MaLR -1 364 1 924 342 94 31 chr1 91804158 91805169 -150859184 - L2 LINE L2 -2 3311 2232 66 14 0 0 chr1 91806744 91806817 -150857536 + AT_rich Low_complexity Low_complexity 1 73 0 275 128 53 0 chr1 91806817 91806911 -150857442 + (TTTAA)n Simple_repeat Simple_repeat 4 102 0 230 18 36 91 chr1 91806922 91806977 -150857376 + (TTAAA)n Simple_repeat Simple_repeat 1 52 0 661 199 129 0 chr1 91807587 91807749 -150856604 - MER5A DNA MER1_type 0 189 4 264 237 50 101 chr1 91808299 91808438 -150855915 + MER5B DNA MER1_type 26 157 -21 704 257 11 6 chr1 91808668 91808843 -150855510 + MER5B DNA MER1_type 2 177 -1 236 174 22 0 chr1 91809392 91809438 -150854915 - L1ME1 LINE L1 -12 6154 6108 842 129 65 7 chr1 91809440 91809579 -150854774 + LTR40a LTR ERVL 4 150 -369 511 103 0 0 chr1 91809634 91809749 -150854604 - AluSg/x SINE Alu 0 329 215 6281 265 70 60 chr1 91809750 91812029 -150852324 + HERVL40 LTR ERVL 2280 4584 -946 1276 189 137 55 chr1 91812029 91812395 -150851958 + MSTD LTR MaLR 1 396 0 6281 265 70 60 chr1 91812395 91812463 -150851890 + HERVL40 LTR ERVL 4584 4650 -880 2559 94 33 46 chr1 91812571 91812626 -150851727 - MLT2A2 LTR ERVL 0 453 399 194 0 39 0 chr1 91812626 91812652 -150851701 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 2559 94 33 46 chr1 91812652 91812989 -150851364 - MLT2A2 LTR ERVL -54 399 66 856 182 22 6 chr1 91813117 91813298 -150851055 + MER53 DNA DNA 4 187 -2 792 163 139 0 chr1 91813762 91813928 -150850425 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr1 91815112 91815133 -150849220 + AT_rich Low_complexity Low_complexity 1 21 0 256 296 51 10 chr1 91815133 91815231 -150849122 - MIR SINE MIR -4 258 157 754 292 50 37 chr1 91817086 91817490 -150846863 + MLT1I LTR MaLR 1 409 0 842 114 38 0 chr1 91818593 91818725 -150845628 - L1PA16 LINE L1 -3 6163 6027 2506 107 11 0 chr1 91818771 91819136 -150845217 - L1PA16 LINE L1 -252 5914 5546 215 276 181 9 chr1 91819320 91819436 -150844917 - MIR SINE MIR -6 256 121 481 277 32 43 chr1 91820132 91820320 -150844033 + MIR SINE MIR 2 187 -75 206 31 0 31 chr1 91822561 91822593 -150841760 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 180 274 16 16 chr1 91822928 91822990 -150841363 - MIR SINE MIR -114 148 87 264 100 0 0 chr1 91823126 91823166 -150841187 + (A)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr1 91823247 91823271 -150841082 + AT_rich Low_complexity Low_complexity 1 24 0 226 254 72 94 chr1 91823374 91823512 -150840841 - MIR SINE MIR -41 221 87 267 152 0 0 chr1 91824397 91824443 -150839910 + (CA)n Simple_repeat Simple_repeat 1 46 0 322 329 167 9 chr1 91824571 91824799 -150839554 - L2 LINE L2 0 3272 3009 300 233 0 14 chr1 91826935 91827008 -150837345 + L1MC4 LINE L1 6641 6712 -1330 243 168 11 63 chr1 91827012 91827107 -150837246 + L1MC4 LINE L1 6614 6703 -1339 239 278 0 0 chr1 91827061 91827151 -150837202 - L1MC4 LINE L1 -1339 6703 6614 * 893 287 141 18 chr1 91827424 91827807 -150836546 + LTR16A LTR ERVL 21 450 0 180 0 0 0 chr1 91829047 91829067 -150835286 + (TA)n Simple_repeat Simple_repeat 2 21 0 2246 91 3 13 chr1 91829835 91830133 -150834220 + AluSp SINE Alu 8 302 -11 27 0 0 0 chr1 91830540 91830567 -150833786 + AT_rich Low_complexity Low_complexity 1 27 0 217 246 53 0 chr1 91831067 91831124 -150833229 - MIR SINE MIR -71 191 132 469 310 58 7 chr1 91831128 91831283 -150833070 - MIR SINE MIR -98 164 2 330 182 55 45 chr1 91831494 91831604 -150832749 - L1ME4a LINE L1 -224 5897 5787 502 319 106 44 chr1 91831679 91832065 -150832288 + MLT1K LTR MaLR 126 535 -53 2456 296 66 35 chr1 91832065 91832213 -150832140 - L2 LINE L2 -366 2948 2806 252 0 0 0 chr1 91832213 91832241 -150832112 + (TA)n Simple_repeat Simple_repeat 2 29 0 2456 296 66 35 chr1 91832241 91833009 -150831344 - L2 LINE L2 -508 2806 1998 1538 220 27 27 chr1 91833009 91833382 -150830971 + MLT1A2 LTR MaLR 2 374 0 2456 296 66 35 chr1 91833382 91833418 -150830935 - L2 LINE L2 -1316 1998 1965 310 232 207 0 chr1 91833479 91833561 -150830792 + MER45C DNA AcHobo 4 102 -851 1708 178 40 8 chr1 91833579 91833933 -150830420 - L1MB1 LINE L1 -1 6167 5803 227 33 0 0 chr1 91833937 91833967 -150830386 + L1P4 LINE L1 5401 5430 -735 752 286 154 15 chr1 91833968 91834241 -150830112 + MER45C DNA AcHobo 94 404 -549 435 229 169 42 chr1 91834246 91834412 -150829941 + MER45C DNA AcHobo 723 909 -44 259 229 0 0 chr1 91835149 91835197 -150829156 + L2 LINE L2 3221 3268 -4 286 336 144 49 chr1 91835348 91835738 -150828615 + L2 LINE L2 2844 3270 -2 339 272 81 35 chr1 91836043 91836216 -150828137 + MLT1K LTR MaLR 398 578 -10 414 0 0 0 chr1 91836561 91836607 -150827746 + (TG)n Simple_repeat Simple_repeat 1 46 0 255 91 73 18 chr1 91838699 91838732 -150825621 - MLT2C1 LTR ERVL 0 520 481 406 56 56 0 chr1 91838732 91838804 -150825549 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 255 91 73 18 chr1 91838804 91838825 -150825528 - MLT2C1 LTR ERVL -39 481 463 1418 171 20 0 chr1 91838916 91839160 -150825193 - MLT2C1 LTR ERVL -61 336 88 3752 213 16 8 chr1 91839160 91839887 -150824466 + MER44D DNA MER2_type 1 605 0 601 124 0 0 chr1 91839887 91839976 -150824377 - MLT2C1 LTR ERVL -308 89 1 740 148 18 59 chr1 91840246 91840290 -150824063 - MLT1C LTR MaLR -303 164 120 2209 81 0 11 chr1 91840290 91840625 -150823728 - AluY SINE Alu 0 332 1 740 148 18 59 chr1 91840625 91840748 -150823605 - MLT1C LTR MaLR -347 120 3 234 128 0 0 chr1 91840981 91841020 -150823333 + (TG)n Simple_repeat Simple_repeat 1 39 0 2269 39 70 11 chr1 91841318 91841603 -150822750 - AluY SINE Alu -9 302 1 661 303 57 15 chr1 91842081 91842345 -150822008 - MLT1J LTR MaLR -186 325 51 404 338 132 49 chr1 91842549 91843494 -150820859 - L2 LINE L2 -344 2970 1947 243 0 0 0 chr1 91843567 91843594 -150820759 + (TG)n Simple_repeat Simple_repeat 2 28 0 402 321 45 45 chr1 91844063 91844309 -150820044 - MIR SINE MIR 0 262 17 447 163 0 0 chr1 91845112 91845192 -150819161 + (TG)n Simple_repeat Simple_repeat 1 80 0 26 30 0 0 chr1 91846151 91846184 -150818169 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr1 91846298 91846336 -150818017 + AT_rich Low_complexity Low_complexity 1 38 0 1844 217 60 100 chr1 91846765 91847416 -150816937 - MLT1E2 LTR MaLR -1 625 1 1751 218 5 14 chr1 91847419 91847786 -150816567 - MLT1A1 LTR MaLR 0 365 2 2517 207 23 23 chr1 91848036 91848549 -150815804 - MLT2B2 LTR ERVL -2 513 1 420 287 81 35 chr1 91848726 91848984 -150815369 + L1ME1 LINE L1 184 453 -5970 352 279 18 9 chr1 91849236 91849347 -150815006 + L1ME1 LINE L1 817 928 -5495 1419 263 81 50 chr1 91849364 91850426 -150813927 + L1ME1 LINE L1 1248 2276 -4665 225 0 0 0 chr1 91850426 91850451 -150813902 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1419 263 81 50 chr1 91850451 91851500 -150812853 + L1ME1 LINE L1 2276 3577 -3364 2889 246 45 23 chr1 91851505 91852947 -150811406 + L1ME1 LINE L1 5343 6828 -133 210 37 0 0 chr1 91852947 91852974 -150811379 + (TG)n Simple_repeat Simple_repeat 2 28 0 2889 246 45 23 chr1 91852974 91853110 -150811243 + L1ME1 LINE L1 6828 6960 -1 313 290 32 41 chr1 91853126 91853347 -150811006 - HAL1b LINE L1 -462 886 668 378 211 32 11 chr1 91855882 91855977 -150808376 + MIR SINE MIR 156 252 -10 21 57 0 0 chr1 91855990 91856025 -150808328 + AT_rich Low_complexity Low_complexity 1 35 0 33 56 0 0 chr1 91856637 91856691 -150807662 + AT_rich Low_complexity Low_complexity 1 54 0 207 171 0 0 chr1 91856827 91856862 -150807491 + (ATTG)n Simple_repeat Simple_repeat 1 35 0 286 345 96 55 chr1 91857026 91857371 -150806982 - L2 LINE L2 -1 3271 2913 1423 244 135 37 chr1 91857520 91858060 -150806293 + MLT1E LTR MaLR 1 593 0 2214 89 30 3 chr1 91858164 91858467 -150805886 + AluY SINE Alu 1 311 0 16117 209 18 13 chr1 91858618 91863233 -150801120 - L1PA15 LINE L1 -2 7601 2772 2241 136 24 8 chr1 91863233 91863602 -150800751 + THE1C LTR MaLR 1 375 0 6435 116 316 4 chr1 91863602 91864797 -150799556 + THE1C-int LTR MaLR 1 1568 -12 2034 172 13 8 chr1 91864802 91865175 -150799178 + THE1C LTR MaLR 1 375 0 5538 298 32 38 chr1 91865175 91867609 -150796744 - L1PA15 LINE L1 -4798 2783 6 288 325 12 0 chr1 91868157 91868240 -150796113 - L2 LINE L2 -1 3312 3229 883 317 110 77 chr1 91868308 91868590 -150795763 - L2 LINE L2 -81 3232 2961 2183 117 7 13 chr1 91868590 91868899 -150795454 + AluSc SINE Alu 1 307 -2 883 317 110 77 chr1 91868899 91869715 -150794638 - L2 LINE L2 -352 2961 2090 1554 214 55 79 chr1 91869727 91870198 -150794155 + MLT1C LTR MaLR 1 460 -7 239 275 0 25 chr1 91870209 91870289 -150794064 - L2 LINE L2 -1317 1997 1920 856 243 51 5 chr1 91870372 91870586 -150793767 + L1MEc LINE L1 36 259 -6137 2170 238 49 86 chr1 91870588 91870887 -150793466 - MER21B LTR ERV1 -79 784 475 1565 190 121 0 chr1 91870887 91871218 -150793135 - MER93b LTR ERV1 0 373 3 2170 238 49 86 chr1 91871218 91871720 -150792633 - MER21B LTR ERV1 -388 475 13 1607 277 68 9 chr1 91871761 91872306 -150792047 + L1MEc LINE L1 286 862 -5534 190 299 129 46 chr1 91872447 91872688 -150791665 - L2 LINE L2 -1458 1856 1596 * 341 337 29 20 chr1 91872684 91872834 -150791519 + MIR3 SINE MIR 15 164 -62 303 315 159 17 chr1 91873838 91874070 -150790283 + MER90 LTR ERV1 246 510 -65 425 273 117 19 chr1 91875617 91875771 -150788582 - MIR SINE MIR -27 235 67 399 41 0 0 chr1 91877460 91877509 -150786844 + (TC)n Simple_repeat Simple_repeat 2 50 0 342 169 0 0 chr1 91877983 91878048 -150786305 + CT-rich Low_complexity Low_complexity 3 67 0 201 262 0 16 chr1 91879226 91879287 -150785066 + T-rich Low_complexity Low_complexity 5 64 0 272 330 40 39 chr1 91879679 91879863 -150784490 + MIR SINE MIR 25 208 -54 22 35 0 0 chr1 91880660 91880689 -150783664 + AT_rich Low_complexity Low_complexity 1 29 0 332 223 223 40 chr1 91880942 91881117 -150783236 + L1MC4 LINE L1 7836 8042 0 404 302 47 24 chr1 91881130 91881299 -150783054 - L2 LINE L2 -18 3295 3123 190 401 35 35 chr1 91882030 91882262 -150782091 + L2 LINE L2 2575 2806 -508 192 325 12 81 chr1 91882525 91882685 -150781668 + L2 LINE L2 3116 3264 -8 499 341 85 20 chr1 91883565 91883811 -150780542 - MIR SINE MIR 0 262 1 288 260 157 34 chr1 91884457 91884661 -150779692 - L1MC4a LINE L1 -1830 5978 5750 319 270 41 57 chr1 91884733 91884890 -150779463 + MLT1J2 LTR MaLR 67 218 -191 194 356 14 0 chr1 91885590 91885663 -150778690 + L2 LINE L2 2632 2705 -609 364 371 101 12 chr1 91885721 91886066 -150778287 + L2 LINE L2 2937 3312 -1 278 381 15 45 chr1 91886292 91886426 -150777927 + MIR SINE MIR 20 149 -59 270 309 44 29 chr1 91887599 91887735 -150776618 + MIR3 SINE MIR 3 140 -68 459 235 17 9 chr1 91888425 91888540 -150775813 - MER103 DNA DNA -48 118 3 25 31 0 0 chr1 91889227 91889259 -150775094 + AT_rich Low_complexity Low_complexity 1 32 0 4776 161 59 15 chr1 91889259 91890187 -150774166 - L1MC1 LINE L1 -1 6332 5364 777 171 0 0 chr1 91890267 91890390 -150773963 - FLAM_A SINE Alu -10 123 1 44138 42 1 3 chr1 91890500 91896702 -150767651 + L1PA4 LINE L1 4 6193 0 518 213 44 15 chr1 91896703 91896839 -150767514 + L1ME LINE L1 5609 5748 -373 186 128 0 0 chr1 91896869 91896908 -150767445 + (A)n Simple_repeat Simple_repeat 1 39 0 780 289 63 64 chr1 91897106 91897826 -150766527 - L2 LINE L2 -66 3247 2544 2552 293 27 13 chr1 91897826 91898649 -150765704 - L2 LINE L2 -1622 1692 859 11900 139 23 10 chr1 91899232 91899907 -150764446 - Tigger1 DNA MER2_type 0 2418 1753 1380 131 0 5 chr1 91899907 91900121 -150764232 - L1PA8 LINE L1 0 6172 5960 11900 139 23 10 chr1 91900121 91901784 -150762569 - Tigger1 DNA MER2_type -665 1753 1 1014 251 5 0 chr1 91902015 91902262 -150762091 - MIR SINE MIR -1 261 16 2012 119 0 34 chr1 91903015 91903340 -150761013 + AluSx SINE Alu 1 315 0 42093 38 23 2 chr1 91905254 91911281 -150753072 + L1PA2 LINE L1 3 6155 0 234 264 155 26 chr1 91912068 91912223 -150752130 - Tigger8 DNA MER2_type -491 175 1 707 366 81 14 chr1 91913841 91914357 -150749996 - L2 LINE L2 -445 2869 2319 256 338 77 35 chr1 91914381 91914668 -150749685 - L2 LINE L2 -2273 1041 743 455 288 8 0 chr1 91915233 91915351 -150749002 + MIR SINE MIR 46 164 -98 366 290 57 0 chr1 91915607 91915731 -150748622 + MLT1I LTR MaLR 10 140 -269 398 316 73 70 chr1 91916979 91917292 -150747061 + L2 LINE L2 2664 2977 -337 678 312 119 22 chr1 91918341 91918610 -150745743 + L2 LINE L2 2859 3183 -130 369 0 0 0 chr1 91918610 91918651 -150745702 + (TG)n Simple_repeat Simple_repeat 2 42 0 678 312 119 22 chr1 91918651 91918791 -150745562 + L2 LINE L2 3183 3308 -5 228 35 0 0 chr1 91919191 91919220 -150745133 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr1 91919689 91919724 -150744629 + AT_rich Low_complexity Low_complexity 1 35 0 579 184 123 17 chr1 91920014 91920193 -150744160 - MER5C DNA MER1_type 0 324 127 245 240 27 13 chr1 91920471 91920546 -150743807 - MER5C DNA MER1_type -202 122 47 236 246 29 0 chr1 91920571 91920640 -150743713 - L1MEc LINE L1 -6045 351 281 1106 117 10 51 chr1 91970757 91970953 -150693400 + THE1B LTR MaLR 177 364 0 11761 91 11 2 chr1 91970953 91972519 -150691834 + THE1B-int LTR MaLR 1 1580 0 2159 109 53 34 chr1 91972519 91972876 -150691477 + THE1B LTR MaLR 1 364 0 180 118 147 0 chr1 91972881 91972915 -150691438 - L2 LINE L2 -15 3257 3219 * 464 271 126 25 chr1 91972886 91973085 -150691268 - MIR SINE MIR -15 247 29 940 247 38 68 chr1 91973406 91973774 -150690579 - MLT1A2 LTR MaLR 0 374 18 365 350 57 33 chr1 91973798 91974129 -150690224 + HAL1 LINE L1 1115 1453 -1054 1938 129 0 0 chr1 91974358 91974621 -150689732 - AluSx SINE Alu -49 263 1 1441 129 44 0 chr1 91974815 91975040 -150689313 - LTR12 LTR ERV1 0 714 480 308 245 10 0 chr1 91975041 91975139 -150689214 - LTR30 LTR ERV1 -80 642 544 1435 129 32 97 chr1 91975140 91975450 -150688903 - pTR5 LTR ERV1 -414 2024 1735 243 237 50 59 chr1 91975473 91975618 -150688735 + MLT1J2 LTR MaLR 247 446 -4 337 250 11 0 chr1 91975758 91975846 -150688507 + MLT1J2 LTR MaLR 17 105 -345 286 214 179 45 chr1 91975956 91976068 -150688285 + MLT1J1 LTR MaLR 285 411 -35 357 284 80 53 chr1 91976116 91976477 -150687876 + L1 LINE L1 2716 3093 -3053 8100 78 2 2 chr1 91976477 91978370 -150685983 + L1PA7 LINE L1 4255 6154 0 357 284 80 53 chr1 91978370 91978445 -150685908 + L1 LINE L1 3093 3164 -2982 568 239 0 42 chr1 91978507 91978649 -150685704 - MIR SINE MIR -21 241 106 300 296 105 19 chr1 91978651 91978813 -150685540 + L1 LINE L1 3176 3351 -2795 1966 100 3 52 chr1 91978832 91979122 -150685231 - AluSp SINE Alu -37 276 1 613 216 17 0 chr1 91979257 91979373 -150684980 + FLAM_C SINE Alu 1 118 -15 41 36 0 0 chr1 91979373 91979428 -150684925 + AT_rich Low_complexity Low_complexity 1 55 0 431 186 194 8 chr1 91979873 91979997 -150684356 + MLT1E LTR MaLR 2 148 -445 271 265 306 10 chr1 91980012 91980208 -150684145 + MLT1E LTR MaLR 119 372 -221 208 381 76 38 chr1 91980252 91980462 -150683891 + MIR SINE MIR 28 245 -17 183 229 0 0 chr1 91980647 91980708 -150683645 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 231 330 0 43 chr1 91981357 91981472 -150682881 - MIR SINE MIR -90 172 63 410 303 66 13 chr1 91981576 91981728 -150682625 + MIR SINE MIR 47 206 -56 24 0 0 0 chr1 91982535 91982559 -150681794 + AT_rich Low_complexity Low_complexity 1 24 0 1728 168 3 11 chr1 91984039 91984350 -150680003 - AluJo SINE Alu 0 309 1 211 239 60 15 chr1 91984358 91984425 -150679928 + MIR SINE MIR 124 193 -69 2183 136 24 21 chr1 91984670 91985044 -150679309 - THE1C LTR MaLR 0 375 1 1812 150 55 30 chr1 91985519 91985885 -150678468 - THE1C LTR MaLR 0 375 1 777 240 73 0 chr1 91985977 91986156 -150678197 - MIR SINE MIR -65 197 6 618 314 22 22 chr1 91986219 91986448 -150677905 - MIR SINE MIR -29 233 5 3386 60 2 0 chr1 91989042 91989475 -150674878 + L1PA6 LINE L1 5721 6154 0 2434 103 20 3 chr1 91989542 91989891 -150674462 - THE1A LTR MaLR 0 355 1 11180 99 10 23 chr1 91989891 91991492 -150672861 - THE1A-int LTR MaLR 0 1580 1 2563 107 0 0 chr1 91991492 91991847 -150672506 - THE1A LTR MaLR 0 355 1 183 337 18 86 chr1 91992962 91993125 -150671228 + MER5B DNA MER1_type 7 158 -20 251 304 43 35 chr1 91993185 91993300 -150671053 + L2 LINE L2 3152 3267 -5 389 314 21 31 chr1 91993661 91993855 -150670498 - L1MEd LINE L1 -5488 631 440 276 91 0 0 chr1 91993974 91994018 -150670335 + (TC)n Simple_repeat Simple_repeat 2 45 0 231 250 0 15 chr1 91994035 91994103 -150670250 + HsTC2 DNA Tc2 1832 1898 0 190 320 0 0 chr1 91994359 91994409 -150669944 + L2 LINE L2 3255 3304 -9 217 311 14 0 chr1 91995302 91995376 -150668977 + CT-rich Low_complexity Low_complexity 2 76 0 530 99 0 12 chr1 91995637 91995718 -150668635 - MADE1 DNA Mariner 0 80 1 468 259 98 17 chr1 91995722 91995896 -150668457 - MIR SINE MIR -3 259 72 2964 107 20 7 chr1 91996908 91997346 -150667007 + MLT2A1 LTR ERVL 1 444 0 26 30 0 0 chr1 91997833 91997866 -150666487 + AT_rich Low_complexity Low_complexity 1 33 0 184 286 0 0 chr1 91997938 91997987 -150666366 + L2 LINE L2 3264 3312 -1 51 70 0 0 chr1 91999097 91999197 -150665156 + AT_rich Low_complexity Low_complexity 1 100 0 460 244 99 54 chr1 92002282 92002524 -150661829 - L2 LINE L2 -871 2443 2191 673 157 0 0 chr1 92002729 92002831 -150661522 + FRAM SINE Alu 21 122 -54 189 234 0 0 chr1 92003416 92003480 -150660873 + CT-rich Low_complexity Low_complexity 4 67 0 227 284 74 53 chr1 92004585 92004680 -150659673 - L2 LINE L2 -30 3242 3146 310 340 158 5 chr1 92005568 92005777 -150658576 + MIR SINE MIR 12 252 -10 416 351 57 23 chr1 92006056 92006355 -150657998 + LTR16C LTR ERVL 89 397 -94 770 262 125 87 chr1 92006368 92006899 -150657454 + LTR41 LTR ERVL 1 561 -212 405 0 0 0 chr1 92006899 92006944 -150657409 + (TG)n Simple_repeat Simple_repeat 1 45 0 770 262 125 87 chr1 92006944 92007045 -150657308 + LTR41 LTR ERVL 561 657 -116 1652 146 146 3 chr1 92007310 92007612 -150656741 + MSTA LTR MaLR 1 345 -83 869 138 6 28 chr1 92007612 92007793 -150656560 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 198 143 0 0 chr1 92007812 92007847 -150656506 + (TTCG)n Simple_repeat Simple_repeat 2 36 0 1869 169 0 10 chr1 92007853 92008154 -150656199 - AluJb SINE Alu -14 298 1 508 97 0 0 chr1 92008154 92008226 -150656127 + MSTA LTR MaLR 357 428 0 231 228 0 18 chr1 92008226 92008283 -150656070 + LTR41 LTR ERVL 717 772 -1 508 164 0 0 chr1 92008283 92008356 -150655997 + LTR16C LTR ERVL 418 490 -1 999 226 0 0 chr1 92008573 92008759 -150655594 + MER5A DNA MER1_type 1 186 -3 1513 220 25 25 chr1 92009126 92009485 -150654868 + MLT1A1 LTR MaLR 1 359 -6 421 332 41 57 chr1 92009978 92010319 -150654034 + HERVL LTR ERVL 3940 4349 -1415 212 231 0 31 chr1 92010640 92010705 -150653648 + (CATA)n Simple_repeat Simple_repeat 4 66 0 515 315 64 28 chr1 92010864 92011115 -150653238 - MIR SINE MIR 0 262 3 1150 249 54 65 chr1 92012599 92013060 -150651293 + L1MCb LINE L1 1 456 -5589 204 186 0 34 chr1 92013131 92013190 -150651163 + (TTATA)n Simple_repeat Simple_repeat 4 60 0 983 217 26 9 chr1 92014241 92014471 -150649882 - MER58 DNA MER1_type -106 235 2 231 88 0 0 chr1 92014498 92014532 -150649821 + (TG)n Simple_repeat Simple_repeat 1 34 0 491 270 99 23 chr1 92015693 92015868 -150648485 + MLT1I LTR MaLR 251 407 -2 234 335 85 28 chr1 92016598 92016774 -150647579 - MIR SINE MIR -1 261 76 497 237 26 0 chr1 92017623 92017737 -150646616 + MIR SINE MIR 57 173 -89 1287 211 42 66 chr1 92018686 92019066 -150645287 + MLT1A2 LTR MaLR 4 374 0 189 74 0 0 chr1 92019747 92019774 -150644579 + (GGAAA)n Simple_repeat Simple_repeat 4 30 0 1390 146 68 118 chr1 92020095 92020478 -150643875 - MLT1A1 LTR MaLR -1 364 1 924 342 94 31 chr1 92020638 92021649 -150642704 - L2 LINE L2 -2 3311 2232 22 0 0 0 chr1 92023219 92023241 -150641112 + AT_rich Low_complexity Low_complexity 1 22 0 248 168 59 40 chr1 92023242 92023343 -150641010 + (TTTAA)n Simple_repeat Simple_repeat 1 103 0 371 47 86 55 chr1 92023347 92023475 -150640878 + (TTAAA)n Simple_repeat Simple_repeat 1 132 0 639 205 130 0 chr1 92024085 92024247 -150640106 - MER5A DNA MER1_type 0 189 4 264 237 50 101 chr1 92024797 92024936 -150639417 + MER5B DNA MER1_type 26 157 -21 704 257 11 6 chr1 92025166 92025341 -150639012 + MER5B DNA MER1_type 2 177 -1 236 174 22 0 chr1 92025890 92025936 -150638417 - L1ME1 LINE L1 -12 6154 6108 842 129 65 7 chr1 92025938 92026077 -150638276 + LTR40a LTR ERVL 4 150 -369 511 103 0 0 chr1 92026132 92026247 -150638106 - AluSg/x SINE Alu 0 329 215 6315 265 70 60 chr1 92026248 92028527 -150635826 + HERVL40 LTR ERVL 2280 4584 -946 1276 189 137 55 chr1 92028527 92028893 -150635460 + MSTD LTR MaLR 1 396 0 6315 265 70 60 chr1 92028893 92028961 -150635392 + HERVL40 LTR ERVL 4584 4650 -880 2559 94 33 46 chr1 92029069 92029124 -150635229 - MLT2A2 LTR ERVL 0 453 399 194 0 39 0 chr1 92029124 92029150 -150635203 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 2559 94 33 46 chr1 92029150 92029487 -150634866 - MLT2A2 LTR ERVL -54 399 66 856 182 22 6 chr1 92029615 92029796 -150634557 + MER53 DNA DNA 4 187 -2 792 163 139 0 chr1 92030260 92030426 -150633927 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr1 92031610 92031631 -150632722 + AT_rich Low_complexity Low_complexity 1 21 0 256 296 51 10 chr1 92031631 92031729 -150632624 - MIR SINE MIR -4 258 157 754 292 50 37 chr1 92033584 92033988 -150630365 + MLT1I LTR MaLR 1 409 0 842 114 38 0 chr1 92035091 92035223 -150629130 - L1PA16 LINE L1 -3 6163 6027 2506 107 11 0 chr1 92035269 92035634 -150628719 - L1PA16 LINE L1 -252 5914 5546 228 267 181 9 chr1 92035818 92035934 -150628419 - MIR SINE MIR -6 256 121 481 277 32 43 chr1 92036630 92036818 -150627535 + MIR SINE MIR 2 187 -75 206 31 0 31 chr1 92039059 92039091 -150625262 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 180 274 16 16 chr1 92039426 92039488 -150624865 - MIR SINE MIR -114 148 87 264 100 0 0 chr1 92039624 92039664 -150624689 + (A)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr1 92039745 92039769 -150624584 + AT_rich Low_complexity Low_complexity 1 24 0 226 254 72 94 chr1 92039872 92040010 -150624343 - MIR SINE MIR -41 221 87 279 173 0 0 chr1 92040895 92040947 -150623406 + (CA)n Simple_repeat Simple_repeat 1 52 0 322 329 167 9 chr1 92041075 92041303 -150623050 - L2 LINE L2 0 3272 3009 300 233 0 14 chr1 92043439 92043512 -150620841 + L1MC4 LINE L1 6641 6712 -1330 243 168 11 63 chr1 92043516 92043611 -150620742 + L1MC4 LINE L1 6614 6703 -1339 239 278 0 0 chr1 92043565 92043655 -150620698 - L1MC4 LINE L1 -1339 6703 6614 * 893 287 141 18 chr1 92043928 92044311 -150620042 + LTR16A LTR ERVL 21 450 0 21 0 0 0 chr1 92045549 92045570 -150618783 + AT_rich Low_complexity Low_complexity 1 21 0 2229 91 3 14 chr1 92046337 92046633 -150617720 + AluSp SINE Alu 8 300 -13 27 0 0 0 chr1 92047040 92047067 -150617286 + AT_rich Low_complexity Low_complexity 1 27 0 217 246 53 0 chr1 92047567 92047624 -150616729 - MIR SINE MIR -71 191 132 469 310 58 7 chr1 92047628 92047783 -150616570 - MIR SINE MIR -98 164 2 330 182 55 45 chr1 92047994 92048104 -150616249 - L1ME4a LINE L1 -224 5897 5787 529 316 106 44 chr1 92048179 92048565 -150615788 + MLT1K LTR MaLR 126 535 -53 2469 294 66 35 chr1 92048565 92048713 -150615640 - L2 LINE L2 -366 2948 2806 594 0 0 0 chr1 92048713 92048779 -150615574 + (TA)n Simple_repeat Simple_repeat 2 67 0 2469 294 66 35 chr1 92048779 92049547 -150614806 - L2 LINE L2 -508 2806 1998 1524 223 27 27 chr1 92049547 92049920 -150614433 + MLT1A2 LTR MaLR 2 374 0 2469 294 66 35 chr1 92049920 92049956 -150614397 - L2 LINE L2 -1316 1998 1965 310 232 207 0 chr1 92050017 92050099 -150614254 + MER45C DNA AcHobo 4 102 -851 1708 178 40 8 chr1 92050117 92050471 -150613882 - L1MB1 LINE L1 -1 6167 5803 227 33 0 0 chr1 92050475 92050505 -150613848 + L1P4 LINE L1 5401 5430 -735 742 289 154 15 chr1 92050506 92050779 -150613574 + MER45C DNA AcHobo 94 404 -549 430 249 176 42 chr1 92050784 92050949 -150613404 + MER45C DNA AcHobo 723 909 -44 259 229 0 0 chr1 92051686 92051734 -150612619 + L2 LINE L2 3221 3268 -4 286 336 144 49 chr1 92051885 92052275 -150612078 + L2 LINE L2 2844 3270 -2 325 278 81 35 chr1 92052580 92052753 -150611600 + MLT1K LTR MaLR 398 578 -10 288 0 0 0 chr1 92053098 92053130 -150611223 + (TG)n Simple_repeat Simple_repeat 1 32 0 255 91 73 18 chr1 92055226 92055259 -150609094 - MLT2C1 LTR ERVL 0 520 481 452 85 24 0 chr1 92055259 92055341 -150609012 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 255 91 73 18 chr1 92055341 92055362 -150608991 - MLT2C1 LTR ERVL -39 481 463 1435 167 20 0 chr1 92055453 92055697 -150608656 - MLT2C1 LTR ERVL -61 336 88 3749 215 16 7 chr1 92055697 92056423 -150607930 + MER44D DNA MER2_type 1 605 0 601 124 0 0 chr1 92056423 92056512 -150607841 - MLT2C1 LTR ERVL -308 89 1 740 148 18 59 chr1 92056782 92056826 -150607527 - MLT1C LTR MaLR -303 164 120 2209 81 0 11 chr1 92056826 92057153 -150607200 - AluY SINE Alu 0 324 1 740 148 18 59 chr1 92057153 92057276 -150607077 - MLT1C LTR MaLR -347 120 3 234 128 0 0 chr1 92057509 92057548 -150606805 + (TG)n Simple_repeat Simple_repeat 1 39 0 2269 39 70 11 chr1 92057846 92058131 -150606222 - AluY SINE Alu -9 302 1 661 303 57 15 chr1 92058609 92058873 -150605480 - MLT1J LTR MaLR -186 325 51 404 338 132 49 chr1 92059077 92060022 -150604331 - L2 LINE L2 -344 2970 1947 243 0 0 0 chr1 92060095 92060122 -150604231 + (TG)n Simple_repeat Simple_repeat 2 28 0 402 321 45 45 chr1 92060591 92060837 -150603516 - MIR SINE MIR 0 262 17 513 163 0 0 chr1 92061640 92061732 -150602621 + (TG)n Simple_repeat Simple_repeat 1 92 0 26 30 0 0 chr1 92062691 92062724 -150601629 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr1 92062838 92062876 -150601477 + AT_rich Low_complexity Low_complexity 1 38 0 1844 217 60 100 chr1 92063305 92063956 -150600397 - MLT1E2 LTR MaLR -1 625 1 1751 218 5 14 chr1 92063959 92064326 -150600027 - MLT1A1 LTR MaLR 0 365 2 2517 207 23 23 chr1 92064576 92065089 -150599264 - MLT2B2 LTR ERVL -2 513 1 420 287 81 35 chr1 92065266 92065524 -150598829 + L1ME1 LINE L1 184 453 -5970 352 279 18 9 chr1 92065776 92065887 -150598466 + L1ME1 LINE L1 817 928 -5495 1419 263 81 50 chr1 92065904 92066966 -150597387 + L1ME1 LINE L1 1248 2276 -4665 225 0 0 0 chr1 92066966 92066991 -150597362 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1419 263 81 50 chr1 92066991 92068040 -150596313 + L1ME1 LINE L1 2276 3577 -3364 2889 246 45 23 chr1 92068045 92069487 -150594866 + L1ME1 LINE L1 5343 6828 -133 210 37 0 0 chr1 92069487 92069514 -150594839 + (TG)n Simple_repeat Simple_repeat 2 28 0 2889 246 45 23 chr1 92069514 92069650 -150594703 + L1ME1 LINE L1 6828 6960 -1 313 290 32 41 chr1 92069666 92069887 -150594466 - HAL1b LINE L1 -462 886 668 378 211 32 11 chr1 92072422 92072517 -150591836 + MIR SINE MIR 156 252 -10 21 57 0 0 chr1 92072527 92072562 -150591791 + AT_rich Low_complexity Low_complexity 1 35 0 33 56 0 0 chr1 92073174 92073228 -150591125 + AT_rich Low_complexity Low_complexity 1 54 0 207 171 0 0 chr1 92073364 92073399 -150590954 + (ATTG)n Simple_repeat Simple_repeat 1 35 0 286 345 96 55 chr1 92073563 92073908 -150590445 - L2 LINE L2 -1 3271 2913 1423 244 135 37 chr1 92074057 92074597 -150589756 + MLT1E LTR MaLR 1 593 0 2202 92 30 3 chr1 92074701 92075004 -150589349 + AluY SINE Alu 1 311 0 16118 209 18 13 chr1 92075155 92079770 -150584583 - L1PA15 LINE L1 -2 7601 2772 2241 136 24 8 chr1 92079770 92080139 -150584214 + THE1C LTR MaLR 1 375 0 6455 116 316 4 chr1 92080139 92081334 -150583019 + THE1C-int LTR MaLR 1 1568 -12 2034 172 13 8 chr1 92081339 92081712 -150582641 + THE1C LTR MaLR 1 375 0 5538 298 32 38 chr1 92081712 92084146 -150580207 - L1PA15 LINE L1 -4798 2783 6 288 325 12 0 chr1 92084694 92084777 -150579576 - L2 LINE L2 -1 3312 3229 883 317 110 79 chr1 92084845 92085127 -150579226 - L2 LINE L2 -81 3232 2960 2203 113 7 13 chr1 92085127 92085436 -150578917 + AluSc SINE Alu 1 307 -2 883 317 110 79 chr1 92085436 92086255 -150578098 - L2 LINE L2 -353 2960 2090 1554 214 55 79 chr1 92086267 92086738 -150577615 + MLT1C LTR MaLR 1 460 -7 239 275 0 25 chr1 92086749 92086829 -150577524 - L2 LINE L2 -1317 1997 1920 856 243 51 5 chr1 92086912 92087126 -150577227 + L1MEc LINE L1 36 259 -6137 2170 238 49 86 chr1 92087128 92087427 -150576926 - MER21B LTR ERV1 -79 784 475 1565 190 121 0 chr1 92087427 92087758 -150576595 - MER93b LTR ERV1 0 373 3 2170 238 49 86 chr1 92087758 92088260 -150576093 - MER21B LTR ERV1 -388 475 13 1637 278 68 7 chr1 92088301 92088845 -150575508 + L1MEc LINE L1 286 862 -5534 190 299 129 46 chr1 92088986 92089227 -150575126 - L2 LINE L2 -1458 1856 1596 * 341 337 29 20 chr1 92089223 92089373 -150574980 + MIR3 SINE MIR 15 164 -62 303 315 159 17 chr1 92090377 92090609 -150573744 + MER90 LTR ERV1 246 510 -65 425 273 117 19 chr1 92092155 92092309 -150572044 - MIR SINE MIR -27 235 67 417 39 0 0 chr1 92093999 92094050 -150570303 + (TC)n Simple_repeat Simple_repeat 2 52 0 342 169 0 0 chr1 92094524 92094589 -150569764 + CT-rich Low_complexity Low_complexity 3 67 0 201 262 0 16 chr1 92095767 92095828 -150568525 + T-rich Low_complexity Low_complexity 5 64 0 272 335 40 39 chr1 92096220 92096404 -150567949 + MIR SINE MIR 25 208 -54 22 35 0 0 chr1 92097201 92097230 -150567123 + AT_rich Low_complexity Low_complexity 1 29 0 332 223 223 40 chr1 92097483 92097658 -150566695 + L1MC4 LINE L1 7836 8042 0 404 302 47 24 chr1 92097671 92097840 -150566513 - L2 LINE L2 -18 3295 3123 190 401 35 35 chr1 92098571 92098803 -150565550 + L2 LINE L2 2575 2806 -508 192 325 12 81 chr1 92099066 92099226 -150565127 + L2 LINE L2 3116 3264 -8 499 341 85 20 chr1 92100106 92100352 -150564001 - MIR SINE MIR 0 262 1 288 260 157 34 chr1 92100998 92101202 -150563151 - L1MC4a LINE L1 -1830 5978 5750 319 270 41 57 chr1 92101274 92101431 -150562922 + MLT1J2 LTR MaLR 67 218 -191 194 356 14 0 chr1 92102131 92102204 -150562149 + L2 LINE L2 2632 2705 -609 364 371 101 12 chr1 92102262 92102607 -150561746 + L2 LINE L2 2937 3312 -1 278 381 15 45 chr1 92102833 92102967 -150561386 + MIR SINE MIR 20 149 -59 270 309 44 29 chr1 92104140 92104276 -150560077 + MIR3 SINE MIR 3 140 -68 459 235 17 9 chr1 92104966 92105081 -150559272 - MER103 DNA DNA -48 118 3 25 31 0 0 chr1 92105768 92105800 -150558553 + AT_rich Low_complexity Low_complexity 1 32 0 4776 161 59 15 chr1 92105800 92106728 -150557625 - L1MC1 LINE L1 -1 6332 5364 777 171 0 0 chr1 92106808 92106931 -150557422 - FLAM_A SINE Alu -10 123 1 43907 43 1 5 chr1 92107041 92113253 -150551100 + L1PA4 LINE L1 4 6193 0 518 213 44 15 chr1 92113254 92113390 -150550963 + L1ME LINE L1 5609 5748 -373 186 128 0 0 chr1 92113420 92113459 -150550894 + (A)n Simple_repeat Simple_repeat 1 39 0 771 288 65 64 chr1 92113657 92114377 -150549976 - L2 LINE L2 -66 3247 2544 2535 294 27 13 chr1 92114377 92115200 -150549153 - L2 LINE L2 -1622 1692 859 11900 139 23 10 chr1 92115783 92116458 -150547895 - Tigger1 DNA MER2_type 0 2418 1753 1380 131 0 5 chr1 92116458 92116672 -150547681 - L1PA8 LINE L1 0 6172 5960 11900 139 23 10 chr1 92116672 92118335 -150546018 - Tigger1 DNA MER2_type -665 1753 1 1014 251 5 0 chr1 92118566 92118813 -150545540 - MIR SINE MIR -1 261 16 2012 119 0 34 chr1 92119566 92119891 -150544462 + AluSx SINE Alu 1 315 0 42093 38 23 2 chr1 92121805 92127832 -150536521 + L1PA2 LINE L1 3 6155 0 234 264 155 26 chr1 92128619 92128774 -150535579 - Tigger8 DNA MER2_type -491 175 1 707 366 81 14 chr1 92130392 92130908 -150533445 - L2 LINE L2 -445 2869 2319 256 338 77 35 chr1 92130932 92131219 -150533134 - L2 LINE L2 -2273 1041 743 455 288 8 0 chr1 92131784 92131902 -150532451 + MIR SINE MIR 46 164 -98 366 290 57 0 chr1 92132158 92132282 -150532071 + MLT1I LTR MaLR 10 140 -269 398 316 73 70 chr1 92133530 92133843 -150530510 + L2 LINE L2 2664 2977 -337 678 312 119 22 chr1 92134892 92135161 -150529192 + L2 LINE L2 2859 3183 -130 369 0 0 0 chr1 92135161 92135202 -150529151 + (TG)n Simple_repeat Simple_repeat 2 42 0 678 312 119 22 chr1 92135202 92135342 -150529011 + L2 LINE L2 3183 3308 -5 228 35 0 0 chr1 92135742 92135771 -150528582 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr1 92136240 92136275 -150528078 + AT_rich Low_complexity Low_complexity 1 35 0 579 184 123 17 chr1 92136565 92136744 -150527609 - MER5C DNA MER1_type 0 324 127 245 240 27 13 chr1 92137022 92137097 -150527256 - MER5C DNA MER1_type -202 122 47 435 301 132 42 chr1 92137122 92137411 -150526942 - L1MEc LINE L1 -6045 351 37 494 261 53 9 chr1 92137436 92137662 -150526691 - L1M4 LINE L1 -3188 2958 2723 838 256 94 25 chr1 92137785 92137833 -150526520 - L1M4 LINE L1 -3570 2576 2533 2565 45 0 0 chr1 92137833 92138125 -150526228 + AluY SINE Alu 3 294 -17 838 256 94 25 chr1 92138125 92138513 -150525840 - L1M4 LINE L1 -3613 2533 2110 491 294 52 75 chr1 92138878 92139280 -150525073 - L1M4 LINE L1 -2195 3951 3559 2395 199 39 21 chr1 92139282 92139851 -150524502 + L1MA7 LINE L1 5702 6280 -11 1787 199 64 26 chr1 92140244 92140746 -150523607 + LTR27 LTR ERV1 11 501 0 2021 234 45 55 chr1 92140788 92141407 -150522946 - MLT1E3 LTR MaLR -11 613 1 384 302 66 28 chr1 92141529 92141741 -150522612 - L1M4 LINE L1 -3238 2908 2689 23 0 0 0 chr1 92141741 92141764 -150522589 + AT_rich Low_complexity Low_complexity 1 23 0 332 350 79 62 chr1 92142416 92143010 -150521343 + L2 LINE L2 2665 3271 -1 930 149 80 11 chr1 92143157 92143332 -150521021 + L1MC2 LINE L1 6132 6318 -26 199 260 26 39 chr1 92143558 92143635 -150520718 - L2 LINE L2 -205 3067 2992 528 345 103 48 chr1 92143698 92144156 -150520197 - L2 LINE L2 -531 2783 2301 818 246 96 0 chr1 92144564 92144844 -150519509 - MER20B DNA MER1_type -1 782 476 421 314 0 8 chr1 92144847 92144965 -150519388 + L2 LINE L2 3196 3312 -1 380 253 0 0 chr1 92144993 92145072 -150519281 - MER20B DNA MER1_type -336 447 369 2761 7 0 0 chr1 92145387 92145691 -150518662 + AluYa5 SINE Alu 1 304 -7 295 282 113 36 chr1 92145881 92146289 -150518064 + LTR16C LTR ERVL 14 482 -9 720 350 64 37 chr1 92146300 92146923 -150517430 + HERV16 LTR ERVL 10 649 -4347 677 296 59 64 chr1 92147140 92147529 -150516824 + HERV16 LTR ERVL 909 1295 -3701 1859 203 45 85 chr1 92148042 92148679 -150515674 - LTR9 LTR ERV1 0 612 1 29 28 0 0 chr1 92149160 92149196 -150515157 + AT_rich Low_complexity Low_complexity 1 36 0 423 318 50 68 chr1 92149311 92149480 -150514873 - L1ME4a LINE L1 -207 5914 5743 2263 174 39 74 chr1 92149480 92150019 -150514334 - MLT2B1 LTR ERVL 0 520 1 423 318 50 68 chr1 92150019 92150177 -150514176 - L1ME4a LINE L1 -378 5743 5592 1628 183 3 14 chr1 92150177 92150472 -150513881 + AluJb SINE Alu 1 292 -20 423 318 50 68 chr1 92150472 92150527 -150513826 - L1ME4a LINE L1 -529 5592 5538 23 33 0 0 chr1 92150557 92150587 -150513766 + AT_rich Low_complexity Low_complexity 1 30 0 248 287 0 20 chr1 92150587 92150688 -150513665 - L1ME4a LINE L1 -910 5393 5295 41 36 0 0 chr1 92151284 92151339 -150513014 + AT_rich Low_complexity Low_complexity 1 55 0 248 227 76 50 chr1 92151375 92151494 -150512859 - L1ME4a LINE L1 -1622 4524 4403 362 332 153 41 chr1 92151816 92152406 -150511947 + L2 LINE L2 2120 2775 -539 1862 106 53 0 chr1 92152534 92152830 -150511523 + AluSc SINE Alu 2 311 0 190 294 120 71 chr1 92155842 92156026 -150508327 - L2 LINE L2 -201 3071 2879 1348 252 34 3 chr1 92157723 92158045 -150506308 - LTR16C LTR ERVL -9 482 151 1185 339 94 15 chr1 92158196 92158912 -150505441 + L2 LINE L2 908 1679 -1635 305 328 34 0 chr1 92158954 92159073 -150505280 + MIR SINE MIR 96 218 -44 23 0 0 0 chr1 92159079 92159102 -150505251 + AT_rich Low_complexity Low_complexity 1 23 0 539 247 61 69 chr1 92159211 92159458 -150504895 + MLT1G1 LTR MaLR 5 249 -346 384 240 122 30 chr1 92159487 92159675 -150504678 + MLT1F LTR MaLR 229 368 -174 1521 190 28 3 chr1 92159942 92160232 -150504121 - MLT1B LTR MaLR -13 377 81 1244 272 19 9 chr1 92160237 92160557 -150503796 - MER93a LTR ERV1 -6 396 74 556 133 12 0 chr1 92160664 92160747 -150503606 - MLT1B LTR MaLR -306 84 1 245 186 0 0 chr1 92160944 92160987 -150503366 + L2 LINE L2 3267 3309 -4 22 0 0 0 chr1 92161744 92161766 -150502587 + AT_rich Low_complexity Low_complexity 1 22 0 955 133 13 0 chr1 92164456 92164629 -150499724 - AluSg/x SINE Alu 0 312 150 288 0 0 0 chr1 92164783 92164815 -150499538 + (TG)n Simple_repeat Simple_repeat 2 33 0 24 32 0 0 chr1 92165224 92165255 -150499098 + AT_rich Low_complexity Low_complexity 1 31 0 2352 84 0 0 chr1 92165576 92165886 -150498467 - AluSg SINE Alu 0 310 1 1335 185 42 0 chr1 92166492 92166752 -150497601 - MER46B DNA MER2_type -59 177 32 335 170 0 0 chr1 92166754 92166807 -150497546 + Tigger4(Zombi) DNA MER2_type 7 59 -2672 13853 143 19 31 chr1 92167021 92167454 -150496899 + Tigger1 DNA MER2_type 1 438 -1980 1140 107 132 10 chr1 92167454 92167659 -150496694 + MER30 DNA MER1_type 1 230 0 13853 143 19 31 chr1 92167659 92169672 -150494681 + Tigger1 DNA MER2_type 438 2417 -1 6894 11 0 0 chr1 92170033 92170860 -150493493 + L1PA3 LINE L1 5350 6176 0 223 273 171 11 chr1 92171297 92171385 -150492968 + L2 LINE L2 3208 3309 -4 219 69 0 0 chr1 92171487 92171516 -150492837 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 577 287 33 37 chr1 92171609 92171853 -150492500 - MLT1I LTR MaLR -67 342 100 743 169 49 22 chr1 92172150 92172333 -150492020 - MER53 DNA DNA 0 189 2 3992 190 38 5 chr1 92173145 92174007 -150490346 - L1 LINE L1 -2060 4086 3196 22 0 0 0 chr1 92174082 92174104 -150490249 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 92174399 92174429 -150489924 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 92174610 92174633 -150489720 + AT_rich Low_complexity Low_complexity 1 23 0 376 309 67 20 chr1 92174941 92175090 -150489263 + MIR3 SINE MIR 1 156 -52 279 164 0 0 chr1 92176097 92176158 -150488195 + (TA)n Simple_repeat Simple_repeat 2 62 0 21 71 0 0 chr1 92176302 92176344 -150488009 + AT_rich Low_complexity Low_complexity 1 42 0 369 244 114 8 chr1 92176858 92176981 -150487372 - L2 LINE L2 -2 3311 3176 1847 235 59 8 chr1 92177025 92177519 -150486834 + LTR40a LTR ERVL 1 519 0 817 268 39 26 chr1 92177703 92177934 -150486419 - MIR SINE MIR -13 249 16 2446 130 66 7 chr1 92178032 92178440 -150485913 + MSTB1 LTR MaLR 1 432 0 301 159 8 87 chr1 92179374 92179500 -150484853 + (TTTAA)n Simple_repeat Simple_repeat 1 116 0 30 0 0 0 chr1 92179683 92179713 -150484640 + AT_rich Low_complexity Low_complexity 1 30 0 1663 185 0 4 chr1 92179713 92179994 -150484359 + AluJb SINE Alu 1 280 -32 230 56 28 0 chr1 92179995 92180031 -150484322 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr1 92180538 92180566 -150483787 + AT_rich Low_complexity Low_complexity 1 28 0 432 314 59 52 chr1 92180672 92180962 -150483391 + L1M4 LINE L1 3602 3893 -2253 216 0 0 0 chr1 92181420 92181444 -150482909 + (TA)n Simple_repeat Simple_repeat 2 25 0 2047 129 3 0 chr1 92181444 92181739 -150482614 - AluSg SINE Alu -14 296 1 210 231 0 0 chr1 92181775 92181814 -150482539 + polypurine Low_complexity Low_complexity 2 40 0 2750 13 10 0 chr1 92182185 92182498 -150481855 + AluYb8 SINE Alu 1 316 -2 24 85 0 0 chr1 92182669 92182728 -150481625 + AT_rich Low_complexity Low_complexity 1 59 0 2339 41 14 3 chr1 92185671 92185961 -150478392 - AluY SINE Alu -18 293 1 22 35 0 0 chr1 92186204 92186233 -150478120 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 92186281 92186331 -150478022 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr1 92187124 92187146 -150477207 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 92187666 92187689 -150476664 + AT_rich Low_complexity Low_complexity 1 23 0 180 298 24 48 chr1 92188229 92188313 -150476040 - MIR SINE MIR -79 183 102 183 330 34 23 chr1 92188457 92188545 -150475808 - MIR3 SINE MIR -38 170 82 3088 245 101 35 chr1 92188602 92190019 -150474334 - L1ME1 LINE L1 -14 6221 4613 1557 201 7 7 chr1 92190019 92190327 -150474026 - AluJo SINE Alu 0 312 5 3088 245 101 35 chr1 92190327 92190981 -150473372 - L1ME1 LINE L1 -1622 4613 4003 4380 78 36 9 chr1 92190981 92192080 -150472273 - MER11A LTR ERVK 0 1266 1 2157 253 120 52 chr1 92192089 92194022 -150470331 - L1ME1 LINE L1 -2215 4000 1926 348 322 33 65 chr1 92194025 92194239 -150470114 - L1ME1 LINE L1 -6151 245 39 895 57 89 0 chr1 92195068 92195191 -150469162 - MER85 DNA T2_type -4 135 2 339 44 0 0 chr1 92195238 92195283 -150469070 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 409 328 56 8 chr1 92195360 92195485 -150468868 + L2 LINE L2 3137 3267 -5 305 321 57 53 chr1 92196203 92196468 -150467885 - MLT1L LTR MaLR -34 581 316 437 191 11 0 chr1 92196864 92196958 -150467395 + MER53 DNA DNA 1 95 -94 2136 128 0 0 chr1 92197461 92197751 -150466602 + AluSg SINE Alu 1 290 -20 26 30 0 0 chr1 92198044 92198077 -150466276 + AT_rich Low_complexity Low_complexity 1 33 0 340 267 33 0 chr1 92199793 92199913 -150464440 + MLT1L LTR MaLR 163 286 -329 2427 111 8 19 chr1 92200062 92200441 -150463912 - THE1C LTR MaLR 0 375 1 261 0 0 0 chr1 92200910 92200939 -150463414 + (CA)n Simple_repeat Simple_repeat 1 29 0 420 158 0 0 chr1 92201230 92201306 -150463047 + (TA)n Simple_repeat Simple_repeat 2 77 0 1074 179 56 0 chr1 92202218 92202413 -150461940 + AluSg/x SINE Alu 86 291 -21 190 204 19 74 chr1 92202475 92202529 -150461824 + MIR SINE MIR 103 153 -55 617 313 136 14 chr1 92202757 92203185 -150461168 + MLT1K LTR MaLR 81 560 -28 42527 35 22 1 chr1 92203236 92209260 -150455093 + L1PA3 LINE L1 4 6155 0 33 25 0 0 chr1 92209264 92209304 -150455049 + AT_rich Low_complexity Low_complexity 1 40 0 281 286 0 0 chr1 92212421 92212477 -150451876 - L2 LINE L2 -12 3260 3205 370 296 34 97 chr1 92215294 92215500 -150448853 - L1ME LINE L1 -574 5547 5355 290 307 44 0 chr1 92216170 92216284 -150448069 - MIR SINE MIR -44 218 100 237 119 0 0 chr1 92216349 92216391 -150447962 + (TG)n Simple_repeat Simple_repeat 2 43 0 2189 122 0 0 chr1 92216726 92217021 -150447332 - AluSx SINE Alu -17 295 1 32 26 0 0 chr1 92217023 92217062 -150447291 + AT_rich Low_complexity Low_complexity 1 39 0 240 273 42 31 chr1 92217175 92217285 -150447068 - MIR SINE MIR -73 135 40 215 305 102 51 chr1 92217350 92217468 -150446885 - L2 LINE L2 0 3313 3190 255 79 0 0 chr1 92217871 92217909 -150446444 + (TG)n Simple_repeat Simple_repeat 2 39 0 370 327 30 33 chr1 92217956 92218158 -150446195 - MIR SINE MIR -55 207 8 440 278 67 75 chr1 92218776 92219136 -150445217 + L1MEc LINE L1 2167 2523 -3873 2847 178 48 35 chr1 92219222 92220031 -150444322 - MER21A LTR ERV1 0 931 1 30 27 0 0 chr1 92220139 92220176 -150444177 + AT_rich Low_complexity Low_complexity 1 37 0 213 311 14 0 chr1 92220518 92220592 -150443761 - MIR SINE MIR -76 186 112 366 342 156 0 chr1 92220612 92220811 -150443542 + MIR SINE MIR 20 249 -13 317 248 105 0 chr1 92220963 92221068 -150443285 + L1M4 LINE L1 4500 4615 -1531 2198 92 23 7 chr1 92221120 92221423 -150442930 + AluSc SINE Alu 1 308 -1 25 0 0 0 chr1 92221662 92221687 -150442666 + AT_rich Low_complexity Low_complexity 1 25 0 212 0 36 0 chr1 92222065 92222093 -150442260 + (TA)n Simple_repeat Simple_repeat 1 29 0 6649 61 32 0 chr1 92222100 92223000 -150441353 - L1PA8A LINE L1 -16 6115 5209 249 273 20 15 chr1 92223240 92223352 -150441001 - MLT1L LTR MaLR -2 613 470 225 247 24 12 chr1 92223595 92223680 -150440673 + (TA)n Simple_repeat Simple_repeat 2 87 0 13742 127 44 35 chr1 92223822 92226217 -150438136 + Tigger1 DNA MER2_type 1 2418 0 659 306 68 22 chr1 92226219 92226763 -150437590 - L1M4c LINE L1 -4932 1452 1016 1477 178 92 13 chr1 92227781 92228084 -150436269 - MER44D DNA MER2_type -9 600 4 321 332 8 84 chr1 92228743 92228981 -150435372 + MIR3 SINE MIR 37 256 -6 191 226 113 0 chr1 92229755 92229817 -150434536 - MIR SINE MIR -10 252 184 2116 157 77 34 chr1 92230121 92230535 -150433818 + MSTB1 LTR MaLR 1 432 0 1804 210 43 50 chr1 92230751 92231212 -150433141 + MLT2B1 LTR ERVL 18 475 -45 219 170 21 53 chr1 92231213 92231307 -150433046 + (TTATA)n Simple_repeat Simple_repeat 1 91 0 279 0 0 0 chr1 92231313 92231344 -150433009 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 294 103 0 0 chr1 92231344 92231383 -150432970 + MLT2C2 LTR ERVL 419 457 -7 467 238 58 23 chr1 92231400 92231572 -150432781 + L1ME LINE L1 145 322 -5883 339 164 0 0 chr1 92231674 92231735 -150432618 + T-rich Low_complexity Low_complexity 1 61 0 375 310 15 107 chr1 92231735 92232006 -150432347 + L1ME LINE L1 434 679 -5526 492 288 124 55 chr1 92232203 92232886 -150431467 + L1ME LINE L1 993 1627 -4769 1730 183 30 0 chr1 92232886 92233220 -150431133 + MER2 DNA MER2_type 1 344 0 492 288 124 55 chr1 92233220 92233745 -150430608 + L1ME LINE L1 1627 2285 -4111 816 225 102 61 chr1 92233967 92234309 -150430044 + HAL1 LINE L1 1239 1594 -913 418 294 109 51 chr1 92234323 92234673 -150429680 + HAL1 LINE L1 1664 2033 -474 811 263 113 60 chr1 92235046 92235560 -150428793 + MLT1F LTR MaLR 1 541 -1 1057 316 155 24 chr1 92236579 92237090 -150427263 - L2 LINE L2 -97 3216 2773 2073 73 0 4 chr1 92237090 92237351 -150427002 + AluY SINE Alu 44 303 -8 1057 316 155 24 chr1 92237351 92237769 -150426584 - L2 LINE L2 -540 2773 2175 13925 198 35 9 chr1 92237809 92240568 -150423785 + L1PB1 LINE L1 6 2692 -4175 2230 57 7 14 chr1 92240568 92240849 -150423504 + AluY SINE Alu 27 305 -6 13925 198 35 9 chr1 92240849 92242875 -150421478 + L1PB1 LINE L1 2692 4664 -2203 269 61 0 41 chr1 92242875 92242924 -150421429 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 13925 198 35 9 chr1 92242924 92244652 -150419701 + L1PB1 LINE L1 4664 6866 -1 28 79 0 0 chr1 92244653 92244716 -150419637 + AT_rich Low_complexity Low_complexity 1 63 0 240 163 0 0 chr1 92245333 92245376 -150418977 + T-rich Low_complexity Low_complexity 1 43 0 219 114 0 0 chr1 92245413 92245448 -150418905 + (ATGGTG)n Simple_repeat Simple_repeat 1 35 0 180 391 124 4 chr1 92245494 92245727 -150418626 - MIR SINE MIR -1 261 1 970 252 70 24 chr1 92246018 92246316 -150418037 + LTR16C LTR ERVL 176 487 -4 13781 150 32 4 chr1 92246811 92249162 -150415191 - Tigger1 DNA MER2_type 0 2418 1 269 248 13 128 chr1 92250133 92250282 -150414071 + MIR SINE MIR 60 191 -71 580 306 126 14 chr1 92250333 92250555 -150413798 - MIR SINE MIR -1 261 15 307 266 62 9 chr1 92250581 92250780 -150413573 + MER5C DNA MER1_type 55 324 0 28 0 0 0 chr1 92251648 92251676 -150412677 + AT_rich Low_complexity Low_complexity 1 28 0 319 281 59 59 chr1 92251806 92251941 -150412412 + MIR SINE MIR 7 141 -121 253 210 16 16 chr1 92252206 92252268 -150412085 + MIR SINE MIR 201 262 0 372 248 40 0 chr1 92252310 92252435 -150411918 - MLT2E LTR ERVL -17 611 482 289 180 0 33 chr1 92252489 92252550 -150411803 + MER53 DNA DNA 4 62 -127 327 207 35 0 chr1 92252707 92252794 -150411559 + MER53 DNA DNA 99 188 -1 1444 267 34 24 chr1 92252797 92253175 -150411178 - MLT2E LTR ERVL -243 385 4 297 255 48 93 chr1 92253572 92253911 -150410442 - L1ME LINE L1 -359 5762 5441 693 266 79 35 chr1 92254446 92254675 -150409678 + MIR SINE MIR 23 261 -1 434 287 144 55 chr1 92254895 92255056 -150409297 - L2 LINE L2 -1103 2211 2066 1750 176 55 32 chr1 92255056 92255436 -150408917 + MLT1B LTR MaLR 2 390 0 434 287 144 55 chr1 92255436 92255636 -150408717 - L2 LINE L2 -1248 2066 1818 200 375 96 19 chr1 92255909 92256013 -150408340 + L2 LINE L2 3141 3252 -20 1184 173 165 34 chr1 92256265 92256531 -150407822 + AluJb SINE Alu 1 301 -1 322 202 45 0 chr1 92256650 92256661 -150407692 - L1MA10 LINE L1 -3 6331 6321 1182 198 169 3 chr1 92256661 92256975 -150407378 - L1ME1 LINE L1 -5 6161 5796 1928 179 75 59 chr1 92257083 92257574 -150406779 - MLT1D LTR MaLR -6 499 1 1435 262 86 7 chr1 92257583 92258006 -150406347 - L1ME1 LINE L1 -440 5724 5336 315 0 0 0 chr1 92258006 92258041 -150406312 + (TG)n Simple_repeat Simple_repeat 2 36 0 1435 262 86 7 chr1 92258041 92258421 -150405932 - L1ME1 LINE L1 -828 5336 4850 347 248 89 42 chr1 92258789 92259003 -150405350 + L1ME3A LINE L1 4399 4622 -1524 32 26 0 0 chr1 92259176 92259215 -150405138 + AT_rich Low_complexity Low_complexity 1 39 0 306 306 31 25 chr1 92259659 92259819 -150404534 + L1ME3A LINE L1 5266 5426 -2382 638 256 13 55 chr1 92259852 92260090 -150404263 - L2 LINE L2 -60 3253 3026 1273 279 30 45 chr1 92260115 92260645 -150403708 + L1ME3A LINE L1 5649 6170 0 271 171 29 29 chr1 92260647 92260717 -150403636 - HAL1b LINE L1 -961 387 318 183 42 0 0 chr1 92261077 92261101 -150403252 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 967 284 39 30 chr1 92261120 92261451 -150402902 + MLT1I LTR MaLR 76 409 0 180 244 73 0 chr1 92262353 92262394 -150401959 - MIR SINE MIR -3 259 216 307 243 159 0 chr1 92263172 92263279 -150401074 - HAL1 LINE L1 -693 1814 1691 552 254 102 99 chr1 92263334 92263716 -150400637 + MLT1J LTR MaLR 15 397 -114 885 297 42 66 chr1 92263861 92264584 -150399769 - HAL1 LINE L1 -835 1672 968 333 258 221 25 chr1 92265437 92265600 -150398753 - MLT1K LTR MaLR -73 515 321 422 249 124 32 chr1 92265801 92265986 -150398367 + MLT1J LTR MaLR 1 202 -309 347 212 152 66 chr1 92265982 92266133 -150398220 + MLT1J LTR MaLR 325 488 -23 * 2212 114 0 0 chr1 92266154 92266462 -150397891 - AluY SINE Alu -1 310 3 567 343 98 14 chr1 92268256 92268696 -150395657 + L2 LINE L2 1600 2076 -1238 372 339 25 0 chr1 92269124 92269245 -150395108 + L2 LINE L2 3190 3313 0 183 363 84 39 chr1 92269365 92269720 -150394633 + L2 LINE L2 2599 2969 -345 187 315 90 22 chr1 92269911 92270000 -150394353 + L2 LINE L2 3184 3278 -35 26 0 0 0 chr1 92270901 92270927 -150393426 + AT_rich Low_complexity Low_complexity 1 26 0 1611 313 75 50 chr1 92271937 92273205 -150391148 + L2 LINE L2 1788 3139 -174 319 272 95 82 chr1 92273916 92274148 -150390205 + MLT1L LTR MaLR 120 354 -261 672 311 50 8 chr1 92274786 92275027 -150389326 - MIR SINE MIR 0 262 12 21 36 0 0 chr1 92276247 92276275 -150388078 + AT_rich Low_complexity Low_complexity 1 28 0 2121 113 20 7 chr1 92276405 92276706 -150387647 - AluSx SINE Alu -7 305 1 267 299 70 32 chr1 92277044 92277106 -150387247 - MIR SINE MIR -14 248 190 2286 110 58 3 chr1 92277106 92277451 -150386902 + THE1B LTR MaLR 1 364 0 267 299 70 32 chr1 92277451 92277545 -150386808 - MIR SINE MIR -72 190 86 * 294 356 113 0 chr1 92277544 92277721 -150386632 - L2 LINE L2 0 3272 3076 332 351 93 13 chr1 92278213 92278438 -150385915 - L2 LINE L2 -937 2377 2135 210 37 0 0 chr1 92278585 92278612 -150385741 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 280 0 0 0 chr1 92278613 92278647 -150385706 - L1M2 LINE L1 -489 5802 5769 12556 21 0 0 chr1 92278649 92280889 -150383464 - L1PA2 LINE L1 0 6155 3923 5687 36 1 0 chr1 92280889 92281586 -150382767 + L1PA2 LINE L1 3227 3924 -2222 278 159 171 11 chr1 92282192 92282280 -150382073 + MER103 DNA DNA 1 102 -64 326 258 34 11 chr1 92282563 92282652 -150381701 + L2 LINE L2 3215 3305 -8 284 319 28 9 chr1 92283072 92283179 -150381174 - MIR SINE MIR -100 108 35 24 67 0 0 chr1 92283819 92283864 -150380489 + AT_rich Low_complexity Low_complexity 1 45 0 379 262 62 0 chr1 92285474 92285618 -150378735 - MIR SINE MIR -62 146 35 401 369 107 17 chr1 92285706 92286061 -150378292 - L3 LINE CR1 -106 1471 1085 198 264 94 0 chr1 92286878 92286931 -150377422 - L2 LINE L2 0 3313 3256 1504 244 34 6 chr1 92287011 92287331 -150377022 + MER45C DNA AcHobo 3 331 -622 496 307 114 39 chr1 92287373 92287653 -150376700 + MER45C DNA AcHobo 318 618 -335 338 294 31 77 chr1 92287796 92287990 -150376363 - L2 LINE L2 -244 3028 2844 23 0 0 0 chr1 92288938 92288961 -150375392 + AT_rich Low_complexity Low_complexity 1 23 0 215 303 40 20 chr1 92289113 92289212 -150375141 - MIR SINE MIR -115 147 47 1554 109 7 102 chr1 92289447 92289589 -150374764 - L1PA15 LINE L1 -10 7593 7439 204 40 0 0 chr1 92289589 92289614 -150374739 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 2254 93 0 0 chr1 92289615 92289894 -150374459 - AluSc SINE Alu -28 281 3 1554 109 7 102 chr1 92289894 92290042 -150374311 - L1PA15 LINE L1 -163 7440 7329 30869 32 13 5 chr1 92290042 92296093 -150368260 - L1PA2 LINE L1 -4 6151 1 16961 200 19 12 chr1 92296094 92300620 -150363733 - L1PA15 LINE L1 -256 7347 2798 285 309 0 0 chr1 92301859 92301927 -150362426 + MIR3 SINE MIR 110 177 -31 706 265 76 91 chr1 92302290 92302762 -150361591 + MLT1J LTR MaLR 3 467 -44 240 248 114 19 chr1 92304348 92304453 -150359900 + MLT1I LTR MaLR 278 392 -17 268 298 12 24 chr1 92305793 92305877 -150358476 - L2 LINE L2 -8 3305 3223 268 271 0 0 chr1 92305989 92306048 -150358305 + (TG)n Simple_repeat Simple_repeat 2 60 0 931 282 57 80 chr1 92306078 92306678 -150357675 - L1MC4a LINE L1 -1906 5902 5317 1760 201 87 28 chr1 92306801 92307259 -150357094 - L1MD2 LINE L1 -16 6343 5859 237 132 0 0 chr1 92307906 92307944 -150356409 + (TA)n Simple_repeat Simple_repeat 2 39 0 236 239 45 34 chr1 92307951 92308039 -150356314 + L1MC4 LINE L1 6615 6703 -1339 227 258 22 22 chr1 92308073 92308162 -150356191 + L1MC4 LINE L1 6614 6702 -1340 180 176 0 0 chr1 92308167 92308201 -150356152 + (TA)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chr1 92308696 92308717 -150355636 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 350 316 181 0 chr1 92310171 92310304 -150354049 - L2 LINE L2 0 3272 3116 2200 114 44 33 chr1 92310358 92310718 -150353635 - THE1B LTR MaLR 0 364 1 11464 98 7 6 chr1 92310718 92312293 -150352060 - THE1B-int LTR MaLR 0 1580 4 1966 143 50 34 chr1 92312296 92312654 -150351699 - THE1B LTR MaLR 0 364 1 2136 119 39 36 chr1 92313092 92313453 -150350900 - THE1B LTR MaLR 0 364 3 2460 257 22 5 chr1 92313456 92314101 -150350252 - L1MB8 LINE L1 -11 6167 5512 236 360 144 8 chr1 92314105 92314230 -150350123 - L2 LINE L2 -572 2742 2601 203 189 0 0 chr1 92315535 92315572 -150348781 + (TTA)n Simple_repeat Simple_repeat 1 37 0 211 283 0 0 chr1 92316122 92316182 -150348171 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 586 224 100 5 chr1 92316491 92316701 -150347652 - MER114 LTR ERV -56 592 363 4710 69 2 2 chr1 92316738 92317347 -150347006 - L1PA7 LINE L1 0 6154 5546 23 0 0 0 chr1 92317418 92317441 -150346912 + AT_rich Low_complexity Low_complexity 1 23 0 366 300 114 48 chr1 92318523 92318776 -150345577 + L1ME LINE L1 5313 5587 -2221 2361 84 0 10 chr1 92318776 92319084 -150345269 + AluY SINE Alu 1 305 -6 366 300 114 48 chr1 92319084 92319103 -150345250 + L1ME LINE L1 5587 5603 -2205 346 261 64 19 chr1 92319161 92319318 -150345035 + L1ME LINE L1 5636 5799 -322 1952 176 3 37 chr1 92319745 92320120 -150344233 - MLT1A1 LTR MaLR -3 362 1 21 57 0 0 chr1 92320532 92320567 -150343786 + AT_rich Low_complexity Low_complexity 1 35 0 892 283 8 26 chr1 92320600 92320865 -150343488 + MIR SINE MIR 2 261 -1 181 407 6 31 chr1 92321268 92321430 -150342923 - L2 LINE L2 -358 2956 2799 256 272 64 48 chr1 92321434 92321559 -150342794 + MER94 DNA DNA 1 127 -7 1677 186 10 10 chr1 92321608 92321904 -150342449 - AluJb SINE Alu -12 300 5 814 167 27 0 chr1 92322303 92322453 -150341900 + LOR1a LTR ERV1 1 154 -343 805 285 18 0 chr1 92322712 92322933 -150341420 - MLT1L LTR MaLR -17 598 374 386 339 101 12 chr1 92322980 92323228 -150341125 - MLT1L LTR MaLR -345 270 1 3479 191 30 71 chr1 92323609 92324407 -150339946 + L1MC1 LINE L1 19 783 -5643 * 7561 215 35 6 chr1 92324389 92324542 -150339811 + L1MC1 LINE L1 3473 3620 -2993 2210 121 0 7 chr1 92324542 92324849 -150339504 + AluSc SINE Alu 4 308 -1 7561 215 35 6 chr1 92324849 92327736 -150336617 + L1MC1 LINE L1 3620 6598 -15 271 361 94 0 chr1 92328026 92328176 -150336177 + MIR SINE MIR 17 180 -63 292 339 130 17 chr1 92328408 92328638 -150335715 - MIR SINE MIR -2 260 5 1068 68 0 0 chr1 92328926 92329073 -150335280 - L1PA12 LINE L1 -1 6167 6021 265 273 68 11 chr1 92329397 92329485 -150334868 + L2 LINE L2 3180 3272 0 183 129 0 0 chr1 92330992 92331023 -150333330 + (CA)n Simple_repeat Simple_repeat 2 32 0 284 338 66 0 chr1 92331539 92331675 -150332678 + MIR SINE MIR 75 219 -43 25 31 0 0 chr1 92331785 92331817 -150332536 + AT_rich Low_complexity Low_complexity 1 32 0 1846 214 101 68 chr1 92334301 92334903 -150329450 - MLT1E2 LTR MaLR -2 624 1 180 0 0 0 chr1 92335001 92335021 -150329332 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 316 335 106 34 chr1 92335063 92335299 -150329054 + L3 LINE CR1 1099 1351 -226 1947 132 36 38 chr1 92335979 92336344 -150328009 - THE1B LTR MaLR 0 364 1 28 48 0 0 chr1 92336698 92336740 -150327613 + AT_rich Low_complexity Low_complexity 1 42 0 275 299 60 26 chr1 92339095 92339212 -150325141 - MIR SINE MIR -65 143 23 1016 276 151 19 chr1 92341545 92342016 -150322337 + MLT1H LTR MaLR 1 533 -16 3138 198 65 16 chr1 92342146 92342875 -150321478 + L1MB8 LINE L1 5414 6177 -1 379 338 63 26 chr1 92343391 92343660 -150320693 + L2 LINE L2 2538 2816 -498 26 52 0 17 chr1 92343773 92343804 -150320549 + AT_rich Low_complexity Low_complexity 1 32 -25 829 180 41 0 chr1 92343804 92343976 -150320377 + L1MB1 LINE L1 5989 6167 -1 26 52 0 17 chr1 92343976 92344002 -150320351 + AT_rich Low_complexity Low_complexity 32 57 0 296 333 99 0 chr1 92344475 92344616 -150319737 + L2 LINE L2 3118 3272 0 861 313 133 14 chr1 92346395 92346810 -150317543 - LTR33 LTR ERVL -37 484 21 213 65 0 0 chr1 92346817 92346848 -150317505 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 372 215 13 27 chr1 92348213 92348362 -150315991 + (CATATA)n Simple_repeat Simple_repeat 3 149 0 623 226 0 6 chr1 92348392 92348573 -150315780 + (CA)n Simple_repeat Simple_repeat 1 180 0 387 324 47 97 chr1 92348860 92349159 -150315194 + L2 LINE L2 2989 3272 0 223 303 117 14 chr1 92349193 92349338 -150315015 - MIR SINE MIR -80 182 23 1281 90 0 0 chr1 92351074 92351241 -150313112 + AluSg/x SINE Alu 142 308 -4 28 48 0 0 chr1 92351907 92351949 -150312404 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr1 92353218 92353263 -150311090 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr1 92355061 92355082 -150309271 + AT_rich Low_complexity Low_complexity 1 21 0 2073 282 155 26 chr1 92355088 92356161 -150308192 - L2 LINE L2 -71 3242 2006 182 214 89 89 chr1 92357244 92357356 -150306997 + L3 LINE CR1 607 718 -859 44 70 0 0 chr1 92357436 92357522 -150306831 + AT_rich Low_complexity Low_complexity 1 86 0 1837 129 47 41 chr1 92357641 92358006 -150306347 - THE1C LTR MaLR -4 371 5 215 310 90 20 chr1 92358034 92358134 -150306219 - MIR SINE MIR -85 177 71 400 169 0 0 chr1 92358151 92358210 -150306143 + MER20 DNA MER1_type 31 89 -130 251 71 24 0 chr1 92358884 92358926 -150305427 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 700 281 159 1 chr1 92359030 92359369 -150304984 + L2 LINE L2 2765 3155 -158 470 311 18 40 chr1 92359391 92359619 -150304734 - LTR16C LTR ERVL -16 475 253 423 302 94 36 chr1 92360331 92360689 -150303664 - MERVL LTR ERVL -529 4956 4628 190 292 111 0 chr1 92360728 92360800 -150303553 + L2 LINE L2 3234 3313 0 186 387 0 0 chr1 92364208 92364283 -150300070 - MIR SINE MIR -72 136 62 227 325 82 41 chr1 92364544 92364738 -150299615 + L2 LINE L2 2616 2817 -497 804 118 0 0 chr1 92365417 92365544 -150298809 + (GAGAA)n Simple_repeat Simple_repeat 4 130 0 211 338 38 12 chr1 92365996 92366076 -150298277 + L2 LINE L2 3148 3229 -43 381 328 97 34 chr1 92367833 92368245 -150296108 - L2 LINE L2 -12 3301 2864 2235 74 0 10 chr1 92369099 92369408 -150294945 + L1PA8 LINE L1 5864 6169 -3 35 24 0 0 chr1 92369408 92369450 -150294903 + AT_rich Low_complexity Low_complexity 1 42 0 2681 259 74 76 chr1 92370148 92370723 -150293630 - MER69 DNA AcHobo -1451 1075 501 2131 180 49 13 chr1 92370723 92371172 -150293181 - L1MD1 LINE L1 0 6242 5778 2681 259 74 76 chr1 92371172 92371671 -150292682 - MER69 DNA AcHobo -2025 501 3 262 282 48 19 chr1 92372050 92372153 -150292200 - MIR SINE MIR -29 233 128 2345 264 46 5 chr1 92372179 92372947 -150291406 - L1M4 LINE L1 -1396 4750 3952 966 249 19 57 chr1 92372990 92373359 -150290994 - L1ME LINE L1 -3412 3529 3175 1573 263 82 62 chr1 92373382 92374919 -150289434 - L1ME LINE L1 -3991 3131 1344 249 33 0 0 chr1 92374919 92374949 -150289404 + (TC)n Simple_repeat Simple_repeat 1 30 0 1573 263 82 62 chr1 92374949 92375647 -150288706 - L1ME LINE L1 -5778 1344 661 734 322 44 26 chr1 92375977 92376311 -150288042 - L1ME LINE L1 -5958 465 120 2464 81 0 0 chr1 92376311 92376618 -150287735 - AluY SINE Alu -4 307 1 734 322 44 26 chr1 92376618 92376711 -150287642 - L1ME LINE L1 -6303 120 30 284 386 21 7 chr1 92376733 92376873 -150287480 - MIR SINE MIR -120 142 1 203 304 20 69 chr1 92377618 92377720 -150286633 - MIR SINE MIR -50 212 116 304 381 50 7 chr1 92378284 92378423 -150285930 + L2 LINE L2 3128 3272 0 183 80 0 0 chr1 92378662 92378687 -150285666 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr1 92378846 92378868 -150285485 + AT_rich Low_complexity Low_complexity 1 22 0 298 290 97 0 chr1 92379218 92379311 -150285042 - L2 LINE L2 0 3272 3171 282 338 30 2 chr1 92381073 92381199 -150283154 - MIR SINE MIR -65 143 16 2144 135 0 0 chr1 92381515 92381819 -150282534 + AluSx SINE Alu 1 304 -8 1643 91 0 30 chr1 92381830 92382062 -150282291 + AluSx SINE Alu 19 243 -69 2134 124 0 0 chr1 92382975 92383273 -150281080 - AluY SINE Alu -12 299 2 44 80 0 0 chr1 92383495 92383595 -150280758 + AT_rich Low_complexity Low_complexity 1 100 0 260 88 26 62 chr1 92383595 92383708 -150280645 + (TTATA)n Simple_repeat Simple_repeat 5 113 0 30 45 0 0 chr1 92383708 92383752 -150280601 + AT_rich Low_complexity Low_complexity 1 44 0 368 335 122 17 chr1 92383758 92383988 -150280365 - MIR SINE MIR -4 258 5 1675 209 98 12 chr1 92384551 92384981 -150279372 + MLT1C LTR MaLR 1 467 0 187 156 0 0 chr1 92386407 92386439 -150277914 - L2 LINE L2 0 3272 3241 637 290 116 5 chr1 92386458 92386682 -150277671 - MIR SINE MIR -1 261 13 213 220 176 33 chr1 92387246 92387337 -150277016 - MIR SINE MIR 0 262 159 323 224 0 0 chr1 92387593 92387651 -150276702 + MER2 DNA MER2_type 35 92 -253 22 0 0 0 chr1 92387671 92387693 -150276660 + AT_rich Low_complexity Low_complexity 1 22 0 216 283 67 0 chr1 92387700 92387760 -150276593 - MIR SINE MIR -15 247 184 960 241 36 12 chr1 92387793 92388046 -150276307 - MIR SINE MIR 0 262 4 346 277 40 90 chr1 92388046 92388223 -150276130 + MIR SINE MIR 20 187 -75 524 310 109 21 chr1 92388504 92388743 -150275610 - MIR SINE MIR 0 262 3 355 353 29 17 chr1 92389826 92389999 -150274354 + MIR SINE MIR 46 220 -42 2460 31 0 0 chr1 92390716 92391004 -150273349 - L1PA5 LINE L1 -4 6150 5863 1477 155 33 98 chr1 92391621 92391988 -150272365 + MER2 DNA MER2_type 1 343 -1 225 284 99 0 chr1 92392027 92392108 -150272245 + MER20B DNA MER1_type 87 175 -608 223 302 93 39 chr1 92392899 92393028 -150271325 - MIR3 SINE MIR -36 172 37 1025 246 18 0 chr1 92393559 92393779 -150270574 + MER58A DNA MER1_type 1 224 0 21 82 0 0 chr1 92396076 92396125 -150268228 + AT_rich Low_complexity Low_complexity 1 49 0 201 231 0 0 chr1 92396383 92396422 -150267931 - L2 LINE L2 0 3272 3234 181 255 39 0 chr1 92397494 92397545 -150266808 - MIR SINE MIR -124 138 86 288 0 0 0 chr1 92397812 92397844 -150266509 + (TG)n Simple_repeat Simple_repeat 2 33 0 26 30 0 0 chr1 92398659 92398692 -150265661 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr1 92399554 92399579 -150264774 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr1 92401150 92401174 -150263179 + AT_rich Low_complexity Low_complexity 1 24 0 2102 174 11 3 chr1 92401336 92401698 -150262655 - MLT1A1 LTR MaLR 0 365 1 2341 81 0 33 chr1 92402683 92402990 -150261363 + AluY SINE Alu 1 297 -14 2349 164 28 25 chr1 92403414 92403846 -150260507 - Tigger2a DNA MER2_type -1 433 1 396 0 0 0 chr1 92404872 92404916 -150259437 + (TTG)n Simple_repeat Simple_repeat 1 44 0 1955 113 4 0 chr1 92404945 92405211 -150259142 - AluSp SINE Alu -46 267 1 638 253 18 12 chr1 92405211 92405377 -150258976 + MER58B DNA MER1_type 172 338 -3 232 252 131 28 chr1 92405558 92405665 -150258688 + MIR SINE MIR 11 128 -134 23 33 0 0 chr1 92405807 92405837 -150258516 + AT_rich Low_complexity Low_complexity 1 30 0 257 0 30 0 chr1 92406289 92406322 -150258031 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 365 261 143 70 chr1 92407075 92407362 -150256991 + L2 LINE L2 3006 3313 0 266 316 82 64 chr1 92407596 92407767 -150256586 - MIR3 SINE MIR -25 183 10 279 289 164 35 chr1 92407847 92408048 -150256305 + MLT1L LTR MaLR 1 227 -388 225 311 57 19 chr1 92408114 92408220 -150256133 + MLT1K LTR MaLR 296 405 -183 435 245 138 44 chr1 92408237 92408396 -150255957 - MER58B DNA MER1_type -1 340 167 194 250 167 0 chr1 92409862 92409922 -150254431 + MIR3 SINE MIR 94 163 -45 793 154 0 37 chr1 92413108 92413244 -150251109 - FLAM_A SINE Alu -1 132 2 669 275 29 67 chr1 92413246 92413480 -150250873 - L1MC/D LINE L1 -2071 5737 5519 2015 119 6 47 chr1 92413480 92413800 -150250553 - AluSq SINE Alu -6 307 1 669 275 29 67 chr1 92413800 92413907 -150250446 - L1MC/D LINE L1 -2289 5519 5409 335 292 82 23 chr1 92413895 92414114 -150250239 - HAL1b LINE L1 -807 541 310 * 267 254 49 7 chr1 92415097 92415239 -150249114 - L1MC/D LINE L1 -2630 3516 3369 357 310 86 67 chr1 92415527 92415959 -150248394 - L1MC/D LINE L1 -3114 3032 2593 480 292 81 60 chr1 92416078 92416376 -150247977 + L2 LINE L2 3001 3304 -9 315 332 31 26 chr1 92416608 92416801 -150247552 + L1M4 LINE L1 4639 4832 -1314 401 250 48 54 chr1 92418161 92418245 -150246108 - MIR SINE MIR -8 254 171 1691 176 40 40 chr1 92418245 92418620 -150245733 - THE1C LTR MaLR 0 375 1 401 250 48 54 chr1 92418620 92418703 -150245650 - MIR SINE MIR -91 171 88 1890 162 77 6 chr1 92418752 92419116 -150245237 - MLT1B LTR MaLR 0 390 1 3813 291 95 35 chr1 92419170 92419323 -150245030 + L2 LINE L2 1117 1259 -2054 919 211 22 5 chr1 92419323 92419508 -150244845 - MER5A DNA MER1_type 0 189 2 3813 291 95 35 chr1 92419508 92421420 -150242933 + L2 LINE L2 1259 3305 -8 1786 199 40 9 chr1 92421545 92421973 -150242380 - Charlie4a DNA MER1_type -1 507 67 1393 161 21 112 chr1 92422324 92422654 -150241699 + AluJo SINE Alu 1 300 -12 23 68 0 0 chr1 92422688 92422732 -150241621 + AT_rich Low_complexity Low_complexity 1 44 0 288 119 0 45 chr1 92422761 92422828 -150241525 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 634 186 23 51 chr1 92423410 92423587 -150240766 + Charlie1 DNA MER1_type 2576 2747 -14 2124 110 0 17 chr1 92423767 92424066 -150240287 + AluY SINE Alu 1 294 -17 208 321 24 0 chr1 92425568 92425652 -150238701 + L2 LINE L2 2384 2469 -845 908 273 37 62 chr1 92426043 92426395 -150237958 - LTR16C LTR ERVL 0 491 149 180 344 122 11 chr1 92426733 92426823 -150237530 - MIR SINE MIR -115 147 48 181 297 253 0 chr1 92430857 92430948 -150233405 - L2 LINE L2 -25 3247 3134 435 371 79 18 chr1 92431135 92431415 -150232938 + L2 LINE L2 2976 3272 0 261 310 0 0 chr1 92432284 92432355 -150231998 + L2 LINE L2 3243 3313 0 237 167 0 76 chr1 92432510 92432550 -150231803 + A-rich Low_complexity Low_complexity 3 38 -25 777 247 0 0 chr1 92432550 92432724 -150231629 + MER69A DNA AcHobo 2 175 -2 237 167 0 76 chr1 92432724 92432749 -150231604 + A-rich Low_complexity Low_complexity 38 63 0 249 186 0 0 chr1 92432977 92433020 -150231333 - MIR SINE MIR -111 151 109 778 247 18 55 chr1 92433051 92433270 -150231083 + MLT1E2 LTR MaLR 17 227 -399 506 290 30 40 chr1 92433619 92433947 -150230406 + L1MEc LINE L1 1431 1755 -4641 1679 208 31 6 chr1 92434149 92434505 -150229848 - MLT1A1 LTR MaLR 0 365 1 213 266 0 38 chr1 92434629 92434708 -150229645 + A-rich Low_complexity Low_complexity 5 80 0 242 211 132 72 chr1 92434756 92434908 -150229445 + L1MEc LINE L1 2246 2406 -3809 491 255 71 47 chr1 92434917 92435340 -150229013 + L1MEc LINE L1 2932 3364 -2851 262 371 107 7 chr1 92435816 92435956 -150228397 + L2 LINE L2 3113 3266 -6 221 325 177 39 chr1 92439230 92439743 -150224610 - L2 LINE L2 -1124 2190 1607 266 388 30 0 chr1 92439775 92439940 -150224413 - L2 LINE L2 -1868 1446 1277 1938 284 109 18 chr1 92440965 92441709 -150222644 - L2 LINE L2 -493 2821 2010 218 98 73 0 chr1 92442110 92442151 -150222202 + T-rich Low_complexity Low_complexity 6 49 0 22 0 0 0 chr1 92443150 92443172 -150221181 + AT_rich Low_complexity Low_complexity 1 22 0 661 186 32 0 chr1 92443978 92444102 -150220251 + Charlie1 DNA MER1_type 1 128 -2633 1168 216 112 3 chr1 92444170 92444536 -150219817 + Charlie1 DNA MER1_type 2356 2761 0 1722 320 131 23 chr1 92444588 92445982 -150218371 + L2 LINE L2 1740 3294 -19 2113 136 7 0 chr1 92446300 92446610 -150217743 - AluSq SINE Alu -1 312 1 205 175 25 0 chr1 92447518 92447558 -150216795 + CT-rich Low_complexity Low_complexity 2 42 0 447 216 88 0 chr1 92449007 92449109 -150215244 - MER94 DNA DNA -22 112 2 1146 356 58 16 chr1 92449266 92449900 -150214453 + L3 LINE CR1 915 1575 -2 255 261 17 118 chr1 92450043 92450162 -150214191 + MER5A DNA MER1_type 23 129 -60 656 277 92 36 chr1 92450337 92450729 -150213624 - MLT1K LTR MaLR -9 579 100 195 129 0 0 chr1 92452797 92452828 -150211525 + (GA)n Simple_repeat Simple_repeat 2 32 0 198 373 17 77 chr1 92453356 92453589 -150210764 + L2 LINE L2 2716 2934 -380 2053 125 7 0 chr1 92453616 92453934 -150210419 - AluSx SINE Alu 0 320 1 1089 183 10 0 chr1 92454323 92454520 -150209833 - MLT1B LTR MaLR 0 390 192 983 153 34 23 chr1 92454707 92454883 -150209470 - MLT1B LTR MaLR -212 178 1 595 361 68 36 chr1 92455202 92455522 -150208831 - MLT1K LTR MaLR -7 581 235 213 65 0 0 chr1 92455522 92455553 -150208800 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 595 361 68 36 chr1 92455553 92455780 -150208573 - MLT1K LTR MaLR -353 235 17 1920 146 3 0 chr1 92456490 92456778 -150207575 + AluSp SINE Alu 1 289 -24 30 0 0 0 chr1 92456778 92456808 -150207545 + AT_rich Low_complexity Low_complexity 1 30 0 222 324 70 42 chr1 92457214 92457356 -150206997 - L2 LINE L2 -337 2976 2831 799 278 183 43 chr1 92457391 92457971 -150206382 - L2 LINE L2 -855 2459 1799 317 228 16 118 chr1 92457975 92458102 -150206251 + L2 LINE L2 3191 3304 -9 601 331 168 33 chr1 92458108 92458742 -150205611 - L2 LINE L2 -2086 1228 681 288 53 0 0 chr1 92458742 92458780 -150205573 + (TG)n Simple_repeat Simple_repeat 1 38 0 601 331 168 33 chr1 92458780 92459143 -150205210 - L2 LINE L2 -2633 681 96 1490 249 60 37 chr1 92459330 92459784 -150204569 - MLT1F LTR MaLR -75 467 4 445 311 41 107 chr1 92459793 92460231 -150204122 - MLT1F-int LTR MaLR -2 1369 961 1708 256 54 12 chr1 92462081 92462596 -150201757 - L1ME1 LINE L1 -122 6044 5508 231 167 21 0 chr1 92462631 92462679 -150201674 - L1ME1 LINE L1 -814 5428 5380 218 266 234 11 chr1 92462695 92462789 -150201564 + L2 LINE L2 3199 3313 0 233 255 0 0 chr1 92463131 92463178 -150201175 + polypyrimidine Low_complexity Low_complexity 2 48 0 367 273 61 30 chr1 92463190 92463322 -150201031 - MIR SINE MIR -10 252 117 346 354 116 5 chr1 92464586 92464801 -150199552 - L2 LINE L2 -875 2439 2201 873 277 32 66 chr1 92465533 92465929 -150198424 - LTR16A LTR ERVL -4 453 51 394 287 33 40 chr1 92466500 92466650 -150197703 + MIR SINE MIR 20 168 -94 416 328 21 21 chr1 92466677 92466866 -150197487 - MIR SINE MIR 0 262 74 6147 128 4 2 chr1 92468423 92469382 -150194971 - L1P LINE L1 -1622 4524 3564 5878 102 34 5 chr1 92469383 92470329 -150194024 + L1PA11 LINE L1 5203 6174 0 430 294 112 24 chr1 92470383 92470610 -150193743 - MIR SINE MIR -11 251 11 2908 230 95 12 chr1 92470843 92471742 -150192611 - MER97b DNA MER1_type? 0 1053 2 2044 110 6 52 chr1 92471930 92472257 -150192096 - AluSx SINE Alu 0 312 1 348 24 0 0 chr1 92472949 92472990 -150191363 + (CA)n Simple_repeat Simple_repeat 2 42 0 456 302 21 58 chr1 92473217 92473406 -150190947 + L2 LINE L2 312 493 -2821 3627 62 50 0 chr1 92473419 92473904 -150190449 - L1PA13 LINE L1 -7 6156 5648 192 304 116 27 chr1 92473967 92474079 -150190274 + L2 LINE L2 480 601 -2713 1178 308 179 20 chr1 92474086 92474801 -150189552 + L2 LINE L2 573 1401 -1913 6969 212 38 20 chr1 92474815 92474976 -150189377 + L1MC/D LINE L1 3392 3549 -2780 2298 110 0 0 chr1 92474976 92475275 -150189078 - AluSx SINE Alu -13 299 1 6969 212 38 20 chr1 92475275 92477269 -150187084 + L1MC/D LINE L1 3549 5586 -743 2046 62 3 65 chr1 92477269 92477559 -150186794 - AluY SINE Alu -12 299 28 498 285 8 0 chr1 92477667 92477790 -150186563 - L2 LINE L2 -1099 2215 2092 3071 123 11 43 chr1 92477835 92477867 -150186486 + L1MC1 LINE L1 5799 5831 -502 2323 100 7 0 chr1 92477867 92478177 -150186176 + AluSx SINE Alu 1 312 0 3071 123 11 43 chr1 92478177 92478424 -150185929 + L1MC1 LINE L1 5831 6054 -279 2170 118 0 0 chr1 92478424 92478720 -150185633 + AluSx SINE Alu 1 296 -16 3071 123 11 43 chr1 92478720 92478992 -150185361 + L1MC1 LINE L1 6054 6333 0 2562 299 120 32 chr1 92478994 92479337 -150185016 + L2 LINE L2 1413 1724 -1589 931 80 0 0 chr1 92479337 92479462 -150184891 + L1PA7 LINE L1 6030 6154 0 2562 299 120 32 chr1 92479462 92480712 -150183641 + L2 LINE L2 1724 3149 -164 879 197 221 24 chr1 92481600 92481989 -150182364 - LTR50 LTR ERVL -35 760 210 2284 112 3 0 chr1 92482327 92482639 -150181714 - AluSq SINE Alu 0 313 1 180 0 0 0 chr1 92483799 92483819 -150180534 + (TG)n Simple_repeat Simple_repeat 1 20 0 822 220 11 6 chr1 92485710 92485887 -150178466 - MER5B DNA MER1_type 0 178 1 437 286 286 0 chr1 92485888 92486080 -150178273 + MIR SINE MIR 10 256 -6 1705 198 49 57 chr1 92486224 92486733 -150177620 - MLT1D LTR MaLR 0 505 1 2476 80 0 3 chr1 92486965 92487276 -150177077 - AluSg SINE Alu 0 310 1 496 325 60 45 chr1 92487975 92488458 -150175895 - L2 LINE L2 -454 2860 2371 268 319 67 37 chr1 92488491 92488626 -150175727 + L2 LINE L2 2720 2858 -456 752 248 78 39 chr1 92488790 92489072 -150175281 + MLT1K LTR MaLR 290 582 -6 280 399 36 30 chr1 92489088 92489256 -150175097 + L2 LINE L2 2944 3112 -160 849 311 93 0 chr1 92489338 92489627 -150174726 + HAL1 LINE L1 30 345 -2162 461 276 99 74 chr1 92489751 92489994 -150174359 - MIR SINE MIR -8 254 6 541 297 58 49 chr1 92490004 92490415 -150173938 + HAL1 LINE L1 2083 2497 -10 181 297 107 57 chr1 92490428 92490691 -150173662 - L2 LINE L2 -1062 2252 1977 793 261 10 10 chr1 92492424 92492627 -150171726 + MIR SINE MIR 3 205 -57 212 211 18 18 chr1 92493458 92493515 -150170838 + (CATA)n Simple_repeat Simple_repeat 2 58 0 231 256 24 49 chr1 92493540 92493622 -150170731 + HAL1b LINE L1 1189 1268 -80 639 272 158 0 chr1 92496220 92496422 -150167931 + MIR SINE MIR 8 241 -21 489 236 32 8 chr1 92496873 92496996 -150167357 - MIR SINE MIR -26 236 111 447 251 84 42 chr1 92497148 92497339 -150167014 + MIR SINE MIR 10 208 -54 1637 142 39 12 chr1 92549672 92549926 -150114427 - AluSx SINE Alu -15 297 37 22 35 0 0 chr1 92549949 92549978 -150114375 + AT_rich Low_complexity Low_complexity 1 29 0 264 397 64 6 chr1 92550247 92550403 -150113950 + MIR3 SINE MIR 19 183 -25 219 340 163 7 chr1 92551358 92551505 -150112848 + L2 LINE L2 2307 2476 -838 405 0 0 0 chr1 92551586 92551631 -150112722 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1099 188 0 10 chr1 92551636 92551828 -150112525 - AluJo SINE Alu -36 276 87 755 227 143 58 chr1 92553346 92553689 -150110664 + LTR16A1 LTR ERVL 6 377 -80 308 231 86 39 chr1 92554144 92554259 -150110094 + MIR3 SINE MIR 66 187 -21 391 304 17 149 chr1 92554642 92555113 -150109240 + L2 LINE L2 2864 3272 0 1145 184 74 4 chr1 92555114 92555370 -150108983 + ORSL DNA AcHobo 2 275 0 258 395 54 22 chr1 92556087 92556272 -150108081 - L3 LINE CR1 -2 1575 1385 451 323 135 22 chr1 92556480 92556709 -150107644 + MIR SINE MIR 3 257 -5 2080 158 78 2 chr1 92557182 92557580 -150106773 + MSTA LTR MaLR 1 428 0 899 253 112 77 chr1 92558322 92558839 -150105514 - MLT1F LTR MaLR -5 537 3 367 268 103 61 chr1 92559179 92559392 -150104961 - MIR SINE MIR -39 223 2 1696 166 10 80 chr1 92559550 92559725 -150104628 + MLT1B LTR MaLR 2 188 -202 2316 103 3 0 chr1 92559725 92560027 -150104326 + AluSx SINE Alu 1 303 -9 1696 166 10 80 chr1 92560027 92560194 -150104159 + MLT1B LTR MaLR 188 313 -77 1917 176 0 3 chr1 92560194 92560507 -150103846 + AluJb SINE Alu 1 312 0 1696 166 10 80 chr1 92560507 92560574 -150103779 + MLT1B LTR MaLR 313 383 -7 286 235 35 0 chr1 92560588 92560673 -150103680 + (TA)n Simple_repeat Simple_repeat 2 89 0 367 305 8 34 chr1 92560831 92560949 -150103404 + MIR SINE MIR 20 134 -128 182 264 56 56 chr1 92560957 92561029 -150103324 - MIR SINE MIR -5 257 186 6248 53 13 13 chr1 92561575 92562355 -150101998 - LTR17 LTR ERV1 0 780 1 312 312 99 57 chr1 92562564 92562705 -150101648 - L2 LINE L2 -3 3269 3123 * 904 274 106 50 chr1 92562700 92563347 -150101006 + L2 LINE L2 2588 3290 -23 327 49 0 0 chr1 92563593 92563634 -150100719 + (TG)n Simple_repeat Simple_repeat 2 42 0 534 274 134 6 chr1 92567036 92567200 -150097153 + MIR SINE MIR 34 218 -44 282 222 208 0 chr1 92567608 92567680 -150096673 - L2 LINE L2 0 3272 3186 31 26 0 0 chr1 92568736 92568774 -150095579 + AT_rich Low_complexity Low_complexity 1 38 0 241 355 45 18 chr1 92569909 92570019 -150094334 + L2 LINE L2 3160 3272 0 213 189 0 0 chr1 92571546 92571583 -150092770 + (TG)n Simple_repeat Simple_repeat 2 38 0 2317 163 26 0 chr1 92571791 92572177 -150092176 - MSTD LTR MaLR 0 396 1 1464 204 40 48 chr1 92574309 92574686 -150089667 - MLT1A2 LTR MaLR 0 374 1 180 327 0 18 chr1 92576643 92576698 -150087655 - L2 LINE L2 -264 3049 2996 410 316 114 28 chr1 92577197 92577593 -150086760 - MLT1K LTR MaLR -14 574 145 326 324 88 7 chr1 92578304 92578440 -150085913 - L2 LINE L2 -10 3262 3116 274 267 163 18 chr1 92579635 92579856 -150084497 + MLT1L LTR MaLR 192 444 -171 217 332 98 38 chr1 92580153 92580388 -150083965 + L2 LINE L2 2728 2976 -338 2169 174 100 23 chr1 92580557 92580991 -150083362 + MLT2B2 LTR ERVL 1 477 -38 524 29 29 0 chr1 92580991 92581060 -150083293 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 2169 174 100 23 chr1 92581060 92581103 -150083250 + MLT2B2 LTR ERVL 477 515 0 23 0 0 0 chr1 92584554 92584577 -150079776 + AT_rich Low_complexity Low_complexity 1 23 0 416 238 185 7 chr1 92586013 92586164 -150078189 - MIR SINE MIR -43 219 42 261 0 0 0 chr1 92588190 92588219 -150076134 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 327 25 0 0 chr1 92588877 92588917 -150075436 + (CA)n Simple_repeat Simple_repeat 1 40 0 796 263 49 12 chr1 92590783 92591026 -150073327 - MIR SINE MIR -2 260 9 220 255 137 0 chr1 92591402 92591453 -150072900 - MER91A DNA MER1_type -44 152 95 24 32 0 0 chr1 92593559 92593590 -150070763 + AT_rich Low_complexity Low_complexity 1 31 0 231 61 0 0 chr1 92593772 92593805 -150070548 + (T)n Simple_repeat Simple_repeat 1 33 0 228 135 0 0 chr1 92594494 92594531 -150069822 + (CA)n Simple_repeat Simple_repeat 2 38 0 181 339 34 0 chr1 92594635 92594694 -150069659 + L3 LINE CR1 598 658 -919 240 309 49 41 chr1 92595055 92595178 -150069175 + MIR SINE MIR 24 147 -61 485 278 78 16 chr1 92596633 92596824 -150067529 - MIR SINE MIR 0 262 60 182 116 0 93 chr1 92596835 92596878 -150067475 + L2 LINE L2 3275 3313 0 356 234 160 0 chr1 92597023 92597117 -150067236 - MIR SINE MIR -93 169 61 260 316 76 0 chr1 92597400 92597479 -150066874 + L2 LINE L2 3188 3272 0 946 183 82 10 chr1 92597707 92597915 -150066438 - MER58A DNA MER1_type -1 223 1 198 0 0 0 chr1 92603712 92603734 -150060619 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2534 179 79 21 chr1 92604477 92605008 -150059345 - MER68 LTR ERV1 0 562 1 392 221 115 0 chr1 92605062 92605175 -150059178 + MER94 DNA DNA 1 126 -8 584 246 103 11 chr1 92605443 92605618 -150058735 + MIR SINE MIR 5 195 -67 264 247 100 7 chr1 92605619 92605816 -150058537 - HsTC2 DNA Tc2 0 1900 1662 * 847 243 184 15 chr1 92605812 92606154 -150058199 - HsTC2 DNA Tc2 -1495 403 4 442 235 76 0 chr1 92606159 92606278 -150058075 + MER69 DNA AcHobo 2 129 -2397 4273 255 77 30 chr1 92606278 92606634 -150057719 + L1ME2 LINE L1 3066 3404 -2760 1986 226 91 24 chr1 92606634 92607186 -150057167 + MLT1E LTR MaLR 3 591 -2 4273 255 77 30 chr1 92607186 92608833 -150055520 + L1ME2 LINE L1 3404 5254 -910 2172 84 11 3 chr1 92608833 92609120 -150055233 + AluSc SINE Alu 1 289 -20 4273 255 77 30 chr1 92609120 92610077 -150054276 + L1ME2 LINE L1 5254 6164 0 26 0 0 0 chr1 92610077 92610103 -150054250 + AT_rich Low_complexity Low_complexity 1 26 0 249 188 0 21 chr1 92611019 92611067 -150053286 + L2 LINE L2 3267 3313 0 456 324 86 12 chr1 92611155 92611399 -150052954 + MIR SINE MIR 1 262 0 424 263 50 21 chr1 92611435 92611614 -150052739 + MIR SINE MIR 5 255 -7 915 276 19 0 chr1 92611662 92611876 -150052477 + MIR SINE MIR 45 262 0 234 348 51 42 chr1 92612541 92612659 -150051694 - MIR3 SINE MIR -5 203 85 2589 44 0 25 chr1 92612760 92613077 -150051276 - AluY SINE Alu -2 309 1 513 287 34 48 chr1 92613105 92613324 -150051029 - MIR SINE MIR -52 210 2 242 323 0 0 chr1 92613812 92613874 -150050479 + MLT1K LTR MaLR 184 245 -343 1146 136 52 195 chr1 92615655 92616061 -150048292 + MER7A DNA MER2_type 1 346 0 394 20 0 0 chr1 92616652 92616702 -150047651 - MADE1 DNA Mariner 0 80 31 21 57 0 0 chr1 92617767 92617802 -150046551 + AT_rich Low_complexity Low_complexity 1 35 0 231 114 0 0 chr1 92617858 92617893 -150046460 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3416 124 43 54 chr1 92618972 92619468 -150044885 - MER4A LTR ERV1 0 600 111 2356 91 10 0 chr1 92619468 92619766 -150044587 - AluSc SINE Alu -8 301 1 3416 124 43 54 chr1 92619766 92619876 -150044477 - MER4A LTR ERV1 -489 111 1 181 306 0 0 chr1 92620076 92620125 -150044228 - L2 LINE L2 -2970 344 296 2244 92 3 7 chr1 92620834 92621138 -150043215 - AluSp SINE Alu -10 303 1 261 278 219 20 chr1 92621259 92621410 -150042943 - MER5A DNA MER1_type 0 189 9 256 372 97 5 chr1 92621412 92621608 -150042745 - L2 LINE L2 -696 2618 2405 204 219 0 0 chr1 92624173 92624214 -150040139 + GA-rich Low_complexity Low_complexity 4 44 0 639 0 0 0 chr1 92624509 92624580 -150039773 + (GAAA)n Simple_repeat Simple_repeat 1 71 0 337 267 128 29 chr1 92626061 92626202 -150038151 - MIR SINE MIR -68 140 33 285 275 23 15 chr1 92626546 92626677 -150037676 + L1ME LINE L1 5692 5823 -298 1645 164 17 34 chr1 92626692 92626990 -150037363 + AluJo SINE Alu 1 293 -19 634 293 123 0 chr1 92627031 92627243 -150037110 - MIR SINE MIR -20 242 5 2637 219 18 7 chr1 92627386 92627947 -150036406 - MLT1F1 LTR MaLR 0 567 1 1747 153 36 11 chr1 92627949 92628230 -150036123 + AluJo SINE Alu 1 288 -24 22 70 0 0 chr1 92628265 92628308 -150036045 + AT_rich Low_complexity Low_complexity 1 43 0 240 35 0 0 chr1 92628468 92628497 -150035856 + (CATA)n Simple_repeat Simple_repeat 2 30 0 611 233 124 48 chr1 92630538 92630748 -150033605 - MIR SINE MIR -35 227 2 982 224 72 48 chr1 92631001 92631383 -150032970 + MLT1J LTR MaLR 106 435 -11 584 349 6 17 chr1 92631383 92631555 -150032798 + MER91A DNA MER1_type 2 171 -25 244 293 0 0 chr1 92631586 92631644 -150032709 + MER91A DNA MER1_type 138 195 -1 2215 116 7 7 chr1 92631776 92632086 -150032267 + AluSx SINE Alu 1 310 -2 3458 100 16 2 chr1 92632122 92632630 -150031723 + L1PB2 LINE L1 5634 6148 -3 622 255 65 10 chr1 92632748 92632948 -150031405 - MIR SINE MIR -49 213 3 212 256 0 0 chr1 92633881 92633924 -150030429 + polypurine Low_complexity Low_complexity 3 45 0 2025 147 7 0 chr1 92634535 92634828 -150029525 - AluSx SINE Alu -17 295 1 461 267 40 16 chr1 92634832 92635020 -150029333 - MIR SINE MIR -48 214 24 766 158 7 33 chr1 92635513 92635665 -150028688 - Tigger7 DNA MER2_type 0 2487 2340 * 1568 245 15 0 chr1 92635661 92636000 -150028353 - Tigger7 DNA MER2_type -2143 344 1 861 257 116 45 chr1 92636000 92636535 -150027818 - L2 LINE L2 -50 3263 2666 393 308 39 39 chr1 92637129 92637259 -150027094 - MIR SINE MIR -131 131 2 241 196 0 20 chr1 92637746 92637797 -150026556 - L2 LINE L2 -1 3312 3263 193 355 105 17 chr1 92638624 92638796 -150025557 - MIR3 SINE MIR -13 195 9 1796 228 93 35 chr1 92638982 92639608 -150024745 - L1MC4 LINE L1 -143 7899 7238 987 260 154 40 chr1 92639580 92639929 -150024424 - L1MC4a LINE L1 -779 7029 6598 * 210 37 0 0 chr1 92639929 92639956 -150024397 + (CA)n Simple_repeat Simple_repeat 1 27 0 987 260 154 40 chr1 92639956 92640133 -150024220 - L1MC4a LINE L1 -1210 6598 6443 236 316 0 0 chr1 92640593 92640650 -150023703 + L2 LINE L2 3249 3305 -8 2343 137 19 31 chr1 92640776 92641137 -150023216 + MSTB1 LTR MaLR 1 358 -74 1568 134 56 106 chr1 92641137 92641532 -150022821 - THE1C LTR MaLR 0 375 1 2343 137 19 31 chr1 92641532 92641594 -150022759 + MSTB1 LTR MaLR 358 419 -13 7963 209 24 5 chr1 92641604 92643211 -150021142 + MSTB1-int LTR MaLR 1 1637 -14 2405 180 24 2 chr1 92643224 92643647 -150020706 + MSTB1 LTR MaLR 1 432 0 208 278 122 22 chr1 92644088 92644178 -150020175 + L2 LINE L2 3213 3311 -2 2858 152 29 6 chr1 92644354 92644921 -150019432 + L1MC1 LINE L1 5219 5796 -548 950 253 63 22 chr1 92644949 92645382 -150018971 - MER74A LTR ERVL -34 524 3 2869 147 3 62 chr1 92645403 92645980 -150018373 + L1MC1 LINE L1 5791 6333 0 256 253 53 106 chr1 92646158 92646328 -150018025 - MIR SINE MIR -10 252 92 330 361 79 32 chr1 92646716 92646993 -150017360 - L2 LINE L2 -417 2897 2608 818 256 30 52 chr1 92647140 92647445 -150016908 + L2 LINE L2 3016 3313 0 7333 44 0 0 chr1 92647552 92649129 -150015224 - L1PA5 LINE L1 0 6154 4577 1996 133 4 0 chr1 92649379 92649689 -150014664 - AluSx SINE Alu 0 314 4 223 328 31 31 chr1 92649708 92649836 -150014517 - MIR SINE MIR -56 206 79 660 288 122 9 chr1 92649920 92650142 -150014211 - MIR SINE MIR -14 248 2 225 348 93 25 chr1 92650922 92651040 -150013313 + L2 LINE L2 3145 3270 -2 220 263 18 0 chr1 92651749 92651806 -150012547 + L2 LINE L2 3215 3272 0 311 262 84 54 chr1 92651867 92652165 -150012188 + L2 LINE L2 2003 2309 -1005 428 306 117 65 chr1 92652173 92652845 -150011508 + L2 LINE L2 2569 3271 -1 601 265 15 59 chr1 92653980 92654184 -150010169 + MIR SINE MIR 1 195 -67 629 211 94 18 chr1 92654294 92654465 -150009888 - LOR1b LTR ERV1 0 461 278 * 798 170 205 0 chr1 92654462 92654633 -150009720 - LOR1a LTR ERV1 -211 286 81 2332 176 48 0 chr1 92655055 92655532 -150008821 - L1MB5 LINE L1 0 6174 5675 916 129 153 0 chr1 92655532 92655695 -150008658 - L1PB4 LINE L1 -7 6149 5962 * 2327 173 27 12 chr1 92655694 92656281 -150008072 - L1MB5 LINE L1 -487 5687 5092 23 0 0 0 chr1 92657167 92657190 -150007163 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 92657712 92657734 -150006619 + AT_rich Low_complexity Low_complexity 1 22 0 391 294 190 0 chr1 92658043 92658250 -150006103 + MIR SINE MIR 17 262 0 286 275 245 30 chr1 92659109 92659378 -150004975 + L3b LINE CR1 1188 1514 -69 216 130 0 0 chr1 92659762 92659808 -150004545 + (A)n Simple_repeat Simple_repeat 1 46 0 452 273 9 9 chr1 92661868 92661978 -150002375 - MIR SINE MIR -105 157 48 22 35 0 0 chr1 92663351 92663380 -150000973 + AT_rich Low_complexity Low_complexity 1 29 0 241 310 124 35 chr1 92664168 92664313 -150000040 - MER5B DNA MER1_type -3 175 18 247 283 117 25 chr1 92664190 92664310 -150000043 + MER5A DNA MER1_type 37 167 -22 * 568 321 18 45 chr1 92664308 92664638 -149999715 - L3 LINE CR1 -159 1418 1098 600 346 109 16 chr1 92665121 92665505 -149998848 - L3 LINE CR1 -827 750 331 310 269 120 19 chr1 92665582 92665690 -149998663 + L2 LINE L2 3154 3272 0 2232 193 118 23 chr1 92666730 92667331 -149997022 + L1ME2 LINE L1 5457 6114 -50 501 289 57 63 chr1 92667511 92667544 -149996809 - L2 LINE L2 -1483 1831 1799 1262 183 36 95 chr1 92667544 92667932 -149996421 + MLT1A1 LTR MaLR 1 365 0 501 289 57 63 chr1 92667932 92668199 -149996154 - L2 LINE L2 -1515 1799 1533 222 279 112 43 chr1 92669177 92669364 -149994989 - MIR SINE MIR -15 247 46 396 40 0 0 chr1 92669413 92669463 -149994890 + (TG)n Simple_repeat Simple_repeat 2 51 0 222 371 14 14 chr1 92670274 92670344 -149994009 - L2 LINE L2 -86 3186 3117 216 308 77 11 chr1 92670870 92670961 -149993392 + L2 LINE L2 2549 2645 -669 273 172 94 0 chr1 92671196 92671260 -149993093 + L1ME LINE L1 5603 5672 -449 220 254 202 35 chr1 92671270 92671384 -149992969 + L2 LINE L2 2828 2960 -312 180 0 0 0 chr1 92672508 92672528 -149991825 + (CAA)n Simple_repeat Simple_repeat 2 21 0 216 0 0 0 chr1 92672990 92673014 -149991339 + (CG)n Simple_repeat Simple_repeat 2 25 0 * 369 0 0 0 chr1 92673013 92673054 -149991299 + (CA)n Simple_repeat Simple_repeat 1 41 0 295 316 133 0 chr1 92674955 92675053 -149989300 - L2 LINE L2 -9 3263 3153 2212 120 0 0 chr1 92675694 92676003 -149988350 + AluY SINE Alu 1 309 -2 180 400 29 9 chr1 92676717 92676822 -149987531 - L2 LINE L2 -33 3239 3133 247 319 50 25 chr1 92677032 92677151 -149987202 - MIR SINE MIR -120 142 21 799 274 107 116 chr1 92677242 92678408 -149985945 + L2 LINE L2 1819 2974 -340 267 308 0 0 chr1 92678427 92678492 -149985861 + L2 LINE L2 3245 3309 -4 341 43 21 0 chr1 92678687 92678734 -149985619 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 732 261 6 0 chr1 92680626 92680791 -149983562 - MER63A DNA MER1_type 0 210 45 21 0 0 0 chr1 92680808 92680829 -149983524 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr1 92681739 92681775 -149982578 + AT_rich Low_complexity Low_complexity 1 36 0 760 274 17 0 chr1 92682379 92682558 -149981795 - MIR SINE MIR -77 185 4 270 310 103 35 chr1 92682902 92683018 -149981335 + L2 LINE L2 3182 3305 -8 308 300 107 101 chr1 92683302 92683899 -149980454 + L1M2 LINE L1 540 1140 -5709 24 53 0 0 chr1 92684747 92684785 -149979568 + AT_rich Low_complexity Low_complexity 1 38 0 347 276 46 7 chr1 92686660 92686812 -149977541 - MER103 DNA DNA -4 162 5 45 62 0 0 chr1 92686975 92687055 -149977298 + AT_rich Low_complexity Low_complexity 1 80 0 28 61 0 0 chr1 92687136 92687185 -149977168 + AT_rich Low_complexity Low_complexity 1 49 0 360 0 0 0 chr1 92687702 92687742 -149976611 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr1 92688668 92688699 -149975654 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 92689926 92689947 -149974406 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 92690280 92690303 -149974050 + (TG)n Simple_repeat Simple_repeat 2 24 0 2326 116 0 0 chr1 92691673 92692025 -149972328 - AluSq SINE Alu 0 352 1 1982 39 0 0 chr1 92692822 92693087 -149971266 + L1PA3 LINE L1 5900 6164 0 23 0 0 0 chr1 92693700 92693723 -149970630 + AT_rich Low_complexity Low_complexity 1 23 0 885 163 20 0 chr1 92694371 92694524 -149969829 + AluSg/x SINE Alu 154 309 -1 383 246 0 0 chr1 92694534 92694628 -149969725 + L1ME3A LINE L1 5469 5561 -603 369 143 0 43 chr1 92694657 92694727 -149969626 + Alu SINE Alu 234 300 0 1325 275 44 5 chr1 92694727 92695138 -149969215 + L1ME3A LINE L1 5570 5996 -174 1209 188 4 19 chr1 92695176 92695437 -149968916 + L1MB8 LINE L1 5922 6178 0 264 241 153 56 chr1 92695830 92696079 -149968274 + L2 LINE L2 2842 3114 -158 355 206 115 18 chr1 92696118 92696248 -149968105 + MIR SINE MIR 53 188 -74 222 250 15 15 chr1 92696314 92696382 -149967971 + MIR SINE MIR 195 262 0 25 0 0 0 chr1 92697502 92697527 -149966826 + AT_rich Low_complexity Low_complexity 1 25 0 7370 39 5 0 chr1 92697951 92699523 -149964830 + L1PA5 LINE L1 4578 6154 0 824 256 30 52 chr1 92699630 92699935 -149964418 - L2 LINE L2 0 3313 3016 329 356 79 36 chr1 92700081 92700359 -149963994 + L2 LINE L2 2608 2897 -417 301 311 39 31 chr1 92701002 92701180 -149963173 - MER5B DNA MER1_type -12 177 2 1704 180 92 32 chr1 92701743 92702143 -149962210 + MSTC LTR MaLR 5 428 0 630 294 75 36 chr1 92702144 92702396 -149961957 + MIR SINE MIR 1 262 0 891 135 0 0 chr1 92702987 92703120 -149961233 + FLAM_C SINE Alu 1 133 0 1158 140 18 0 chr1 92703132 92703303 -149961050 + AluSq SINE Alu 1 174 -139 404 312 103 67 chr1 92703713 92703995 -149960358 - L2 LINE L2 -8 3264 2973 2416 100 0 0 chr1 92704058 92704369 -149959984 + AluSq SINE Alu 3 313 0 24 32 0 0 chr1 92704553 92704584 -149959769 + AT_rich Low_complexity Low_complexity 1 31 0 243 161 32 0 chr1 92704714 92704776 -149959577 - L1MC4 LINE L1 -1339 6703 6640 1698 171 0 11 chr1 92704803 92705078 -149959275 - AluJo SINE Alu -40 272 1 2213 107 7 13 chr1 92705240 92705558 -149958795 - AluSx SINE Alu 0 316 1 2557 65 0 0 chr1 92705710 92706017 -149958336 - AluY SINE Alu -4 307 1 958 191 0 0 chr1 92706144 92706312 -149958041 - FAM SINE Alu -6 169 2 338 281 180 18 chr1 92706433 92706600 -149957753 + L2 LINE L2 3118 3311 -2 267 335 67 67 chr1 92706687 92707018 -149957335 - L2 LINE L2 -990 2324 1994 1776 112 4 34 chr1 92707576 92707843 -149956510 - AluSq SINE Alu -54 259 1 928 164 26 0 chr1 92707913 92708065 -149956288 - FAM SINE Alu -19 156 1 287 169 31 0 chr1 92708164 92708229 -149956124 - HAL1 LINE L1 -340 2167 2101 1641 170 64 0 chr1 92708343 92708608 -149955745 - AluJb SINE Alu -30 282 1 1332 253 89 39 chr1 92708762 92709245 -149955108 - HAL1 LINE L1 -585 1922 1416 598 186 57 32 chr1 92709287 92709411 -149954942 + FLAM_A SINE Alu 1 127 -6 3058 80 42 9 chr1 92710841 92711196 -149953157 - L1PB1 LINE L1 0 6151 5809 414 57 0 0 chr1 92711196 92711249 -149953104 + (TA)n Simple_repeat Simple_repeat 2 54 0 216 0 0 0 chr1 92711248 92711272 -149953081 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 3058 80 42 9 chr1 92711249 92711364 -149952989 - L1PB1 LINE L1 -342 5809 5689 487 328 92 40 chr1 92711464 92712037 -149952316 - L2 LINE L2 -848 2466 1864 682 176 17 0 chr1 92712165 92712284 -149952069 + AluJb SINE Alu 1 121 -191 820 136 0 0 chr1 92712384 92712502 -149951851 - AluSq/x SINE Alu -194 118 1 999 288 29 33 chr1 92712502 92712984 -149951369 - L2 LINE L2 -151 3162 2686 1595 163 0 0 chr1 92713066 92713312 -149951041 + AluJb SINE Alu 1 246 -66 2556 58 0 7 chr1 92714659 92714969 -149949384 + AluY SINE Alu 1 308 -3 1172 254 0 15 chr1 92715790 92716050 -149948303 - MIR SINE MIR -6 256 1 3287 171 37 34 chr1 92716999 92717760 -149946593 - L1MB4 LINE L1 -1 6179 5417 27 0 0 0 chr1 92717920 92717947 -149946406 + AT_rich Low_complexity Low_complexity 1 27 0 2650 281 92 35 chr1 92718048 92721469 -149942884 - L1ME3A LINE L1 0 6170 2485 23 0 0 0 chr1 92722006 92722029 -149942324 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 92723108 92723133 -149941220 + AT_rich Low_complexity Low_complexity 1 25 0 7665 20 5 0 chr1 92723557 92725173 -149939180 + L1PA3 LINE L1 4578 6198 0 189 154 0 0 chr1 92726233 92726272 -149938081 + (TG)n Simple_repeat Simple_repeat 1 39 0 982 157 6 13 chr1 92726276 92726435 -149937918 - FAM SINE Alu -17 158 1 195 42 0 0 chr1 92726914 92726938 -149937415 + (TG)n Simple_repeat Simple_repeat 2 25 0 339 85 0 0 chr1 92727007 92727054 -149937299 + (GA)n Simple_repeat Simple_repeat 2 48 0 2005 30 0 0 chr1 92727512 92727777 -149936576 + L1PA3 LINE L1 5900 6164 0 23 0 0 0 chr1 92728390 92728413 -149935940 + AT_rich Low_complexity Low_complexity 1 23 0 620 317 83 0 chr1 92730589 92730829 -149933524 + MIR SINE MIR 2 261 -1 2915 71 0 11 chr1 92731895 92732274 -149932079 - THE1C LTR MaLR 0 375 1 870 203 138 5 chr1 92732329 92732546 -149931807 + MIR SINE MIR 16 261 -1 881 204 0 33 chr1 92733429 92733610 -149930743 + AluJo SINE Alu 63 237 -75 524 292 78 49 chr1 92733652 92734228 -149930125 + L1ME LINE L1 4791 5383 -763 745 252 92 40 chr1 92734236 92734585 -149929768 + L1ME LINE L1 5423 5789 -375 1809 172 0 3 chr1 92734721 92735012 -149929341 - AluJb SINE Alu -22 290 1 231 146 0 0 chr1 92735080 92735121 -149929232 + (TA)n Simple_repeat Simple_repeat 1 41 0 353 225 45 22 chr1 92735122 92735211 -149929142 + L1MC4 LINE L1 6613 6703 -1339 337 237 0 62 chr1 92735232 92735329 -149929024 + L1MC4 LINE L1 6613 6703 -1339 351 238 7 20 chr1 92735333 92735629 -149928724 + (CATATA)n Simple_repeat Simple_repeat 1 292 0 481 351 0 0 chr1 92735700 92735871 -149928482 + (TATATG)n Simple_repeat Simple_repeat 4 174 0 549 149 8 16 chr1 92735871 92735992 -149928361 + GA-rich Low_complexity Low_complexity 2 121 0 252 86 0 0 chr1 92735989 92736024 -149928329 + (GGAGA)n Simple_repeat Simple_repeat 2 36 0 * 225 255 0 0 chr1 92737464 92737515 -149926838 - L2 LINE L2 -11 3261 3211 290 316 98 23 chr1 92737970 92738103 -149926250 + L2 LINE L2 2910 3052 -220 570 130 0 30 chr1 92738350 92738450 -149925903 - MIR SINE MIR -15 247 151 318 230 97 9 chr1 92738488 92738601 -149925752 - MER46C DNA MER2_type -137 201 79 426 159 0 0 chr1 92738664 92738733 -149925620 - MIR SINE MIR -115 147 79 327 232 14 0 chr1 92739608 92739677 -149924676 + L2 LINE L2 3242 3311 -2 219 273 15 45 chr1 92739717 92739783 -149924570 + L2 LINE L2 3204 3267 -5 1037 311 47 40 chr1 92739803 92740250 -149924103 + LTR16B LTR ERVL 1 450 -14 31 26 0 0 chr1 92741042 92741080 -149923273 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 92741208 92741229 -149923124 + AT_rich Low_complexity Low_complexity 1 21 0 445 302 65 42 chr1 92742985 92743363 -149920990 - L1ME LINE L1 -413 5708 5311 365 323 42 0 chr1 92743566 92743758 -149920595 - L1ME LINE L1 -1070 5076 4877 247 304 25 13 chr1 92743989 92744068 -149920285 + L2 LINE L2 3193 3272 0 1962 262 243 45 chr1 92744286 92745773 -149918580 + L2 LINE L2 1286 3180 -133 2006 131 8 50 chr1 92745773 92746132 -149918221 + MER2 DNA MER2_type 1 344 0 1962 262 243 45 chr1 92746132 92746299 -149918054 + L2 LINE L2 3180 3313 0 2008 148 0 0 chr1 92746686 92746969 -149917384 + AluSx SINE Alu 12 294 -18 27 29 0 0 chr1 92747257 92747291 -149917062 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr1 92747586 92747625 -149916728 + AT_rich Low_complexity Low_complexity 1 39 0 40 42 0 53 chr1 92747845 92747940 -149916413 + AT_rich Low_complexity Low_complexity 1 90 0 21 0 0 0 chr1 92748577 92748598 -149915755 + AT_rich Low_complexity Low_complexity 1 21 0 540 251 150 44 chr1 92750279 92750506 -149913847 - MIR SINE MIR -6 256 6 228 67 0 0 chr1 92751580 92751610 -149912743 + (T)n Simple_repeat Simple_repeat 1 30 0 24 32 0 0 chr1 92751906 92751937 -149912416 + AT_rich Low_complexity Low_complexity 1 31 0 225 94 0 0 chr1 92752338 92752370 -149911983 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 251 250 22 11 chr1 92752829 92752921 -149911432 + GA-rich Low_complexity Low_complexity 3 95 0 202 308 125 25 chr1 92753271 92753391 -149910962 - MIR3 SINE MIR -43 165 34 21 36 0 0 chr1 92753990 92754018 -149910335 + AT_rich Low_complexity Low_complexity 1 28 0 296 64 21 0 chr1 92754136 92754183 -149910170 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 0 0 0 chr1 92754316 92754340 -149910013 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr1 92754462 92754487 -149909866 + AT_rich Low_complexity Low_complexity 1 25 0 238 230 54 54 chr1 92756198 92756272 -149908081 + L2 LINE L2 2923 2996 -317 194 407 9 0 chr1 92756528 92756636 -149907717 + L2 LINE L2 2868 2976 -337 2424 82 0 0 chr1 92756646 92756951 -149907402 - AluSc SINE Alu -4 305 1 290 368 45 64 chr1 92757178 92757444 -149906909 - L2 LINE L2 -8 3264 3004 7541 26 3 0 chr1 92757522 92758973 -149905380 + L1PA4 LINE L1 4700 6153 -2 1747 156 7 39 chr1 92759131 92759438 -149904915 + AluJo SINE Alu 3 299 -13 22 35 0 0 chr1 92760877 92760906 -149903447 + AT_rich Low_complexity Low_complexity 1 29 0 437 224 75 40 chr1 92760960 92761134 -149903219 + L1MCc LINE L1 17 196 -6227 468 270 116 43 chr1 92761242 92761520 -149902833 + MLT1H1 LTR MaLR 187 530 -65 324 0 0 0 chr1 92761581 92761617 -149902736 + (TG)n Simple_repeat Simple_repeat 2 37 0 220 278 102 73 chr1 92762540 92762745 -149901608 - L2 LINE L2 -3035 279 69 227 344 61 37 chr1 92763943 92764106 -149900247 + MIR SINE MIR 21 187 -75 206 31 0 31 chr1 92764527 92764559 -149899794 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 332 395 31 17 chr1 92765073 92765364 -149898989 - L2 LINE L2 -583 2731 2437 322 254 14 42 chr1 92765609 92765751 -149898602 + A-rich Low_complexity Low_complexity 2 139 0 225 288 83 45 chr1 92766392 92766524 -149897829 - L2 LINE L2 -14 3299 3163 2207 139 14 26 chr1 92766661 92767079 -149897274 + L1MB3 LINE L1 5771 6183 0 440 278 136 70 chr1 92767372 92767703 -149896650 + L2 LINE L2 2109 2461 -853 218 262 131 0 chr1 92767709 92767770 -149896583 + L2 LINE L2 3198 3266 -6 201 372 0 0 chr1 92767944 92768022 -149896331 - L2 LINE L2 -845 2469 2392 204 377 113 9 chr1 92768028 92768134 -149896219 + L2 LINE L2 3104 3220 -52 2089 83 48 17 chr1 92768163 92768453 -149895900 + AluSq SINE Alu 1 299 -14 239 255 0 0 chr1 92768611 92768658 -149895695 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 219 69 0 0 chr1 92769064 92769093 -149895260 + (TTTAA)n Simple_repeat Simple_repeat 4 32 0 192 314 98 20 chr1 92769506 92769608 -149894745 - L2 LINE L2 -25 3288 3179 203 299 75 0 chr1 92770636 92770703 -149893650 - L3b LINE CR1 -1 1582 1511 * 219 298 0 0 chr1 92770692 92770739 -149893614 - L3 LINE CR1 -106 1471 1425 235 279 0 0 chr1 92770779 92770840 -149893513 - L3 LINE CR1 -280 1297 1237 238 300 30 50 chr1 92771039 92771139 -149893214 + MIR3 SINE MIR 110 207 -1 28 0 0 0 chr1 92771343 92771371 -149892982 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 92771954 92771989 -149892364 + AT_rich Low_complexity Low_complexity 1 35 0 271 291 122 34 chr1 92772381 92772701 -149891652 - L1ME4a LINE L1 -5 6116 5769 24 0 0 0 chr1 92773550 92773574 -149890779 + AT_rich Low_complexity Low_complexity 1 24 0 227 288 150 0 chr1 92773904 92773984 -149890369 + L2 LINE L2 3150 3241 -31 186 167 0 0 chr1 92774877 92774913 -149889440 + (CA)n Simple_repeat Simple_repeat 1 36 0 219 243 68 87 chr1 92775136 92775239 -149889114 + L3 LINE CR1 1451 1551 -26 465 265 301 18 chr1 92776184 92776577 -149887776 + L2 LINE L2 2793 3294 -19 451 295 148 0 chr1 92777053 92777236 -149887117 + MIR SINE MIR 17 226 -36 21 36 0 0 chr1 92778027 92778055 -149886298 + AT_rich Low_complexity Low_complexity 1 28 0 407 296 69 78 chr1 92778993 92779328 -149885025 + MER102b DNA MER1_type 10 341 0 1656 154 33 77 chr1 92779380 92779539 -149884814 + MER7A DNA MER2_type 2 166 -2872 2225 98 7 7 chr1 92779539 92779836 -149884517 - AluSx SINE Alu -15 297 1 1656 154 33 77 chr1 92779836 92780039 -149884314 + MER7A DNA MER2_type 166 346 0 379 215 65 28 chr1 92781391 92781498 -149882855 - L2 LINE L2 -1 3312 3202 238 211 18 0 chr1 92782202 92782259 -149882094 - L1ME4a LINE L1 -101 6020 5963 190 313 205 9 chr1 92782397 92782509 -149881844 - MIR SINE MIR -57 151 18 706 317 77 73 chr1 92782622 92783733 -149880620 + L2 LINE L2 2168 3265 -7 181 263 71 30 chr1 92784316 92784415 -149879938 + L2 LINE L2 2943 3045 -268 6137 213 76 33 chr1 92785092 92786720 -149877633 + L1M4 LINE L1 13 1711 -4831 2041 115 0 30 chr1 92786759 92787063 -149877290 + AluSx SINE Alu 1 295 -17 1620 239 81 21 chr1 92787070 92787909 -149876444 + L1M4 LINE L1 2197 3102 -3542 39 80 0 0 chr1 92788037 92788125 -149876228 + AT_rich Low_complexity Low_complexity 1 88 0 2331 59 7 0 chr1 92788396 92788684 -149875669 - AluY SINE Alu -21 290 1 724 113 43 0 chr1 92788799 92788914 -149875439 - Tigger3(Golem) DNA MER2_type -2745 284 165 25 0 0 0 chr1 92789412 92789437 -149874916 + AT_rich Low_complexity Low_complexity 1 25 0 486 219 41 41 chr1 92789744 92789867 -149874486 - L2 LINE L2 -1 3312 3190 251 203 85 0 chr1 92790436 92790495 -149873858 + MIR SINE MIR 182 245 -17 336 24 0 0 chr1 92790508 92790549 -149873804 + (CA)n Simple_repeat Simple_repeat 2 42 0 544 266 75 16 chr1 92790665 92790853 -149873500 + MIR3 SINE MIR 3 201 -7 2145 107 7 19 chr1 92791649 92791959 -149872394 - AluSc SINE Alu -3 306 1 2339 68 14 0 chr1 92793400 92793696 -149870657 + AluY SINE Alu 1 300 -11 23 33 0 0 chr1 92794432 92794462 -149869891 + AT_rich Low_complexity Low_complexity 1 30 0 362 217 203 0 chr1 92794995 92795133 -149869220 - MIR SINE MIR 0 262 97 390 339 98 0 chr1 92795915 92796098 -149868255 - MIR SINE MIR -13 249 49 717 144 138 31 chr1 92796882 92797042 -149867311 + MER5B DNA MER1_type 1 177 -1 327 226 71 0 chr1 92797568 92797652 -149866701 + L2 LINE L2 3217 3306 -7 1422 196 26 71 chr1 92797654 92798036 -149866317 + MLT1A1 LTR MaLR 1 365 0 1458 160 76 14 chr1 92798059 92798334 -149866019 + AluJb SINE Alu 1 292 -20 25 75 0 0 chr1 92798428 92798481 -149865872 + AT_rich Low_complexity Low_complexity 1 53 0 1341 173 17 13 chr1 92798485 92798599 -149865754 - AluJo SINE Alu -74 238 126 273 29 0 0 chr1 92798599 92798633 -149865720 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1341 173 17 13 chr1 92798633 92798755 -149865598 - AluJo SINE Alu -186 126 1 2372 80 0 7 chr1 92798758 92799060 -149865293 - AluSp SINE Alu -13 300 1 227 283 47 19 chr1 92799067 92799173 -149865180 + L1MC4a LINE L1 5864 5972 -1836 26 50 0 0 chr1 92799733 92799773 -149864580 + AT_rich Low_complexity Low_complexity 1 40 0 373 208 108 33 chr1 92799838 92799958 -149864395 - MIR SINE MIR -67 195 67 1011 170 0 22 chr1 92800123 92800305 -149864048 + MLT1A2 LTR MaLR 197 374 0 282 221 135 10 chr1 92800435 92800539 -149863814 - MIR SINE MIR -7 255 139 513 195 237 0 chr1 92801123 92801268 -149863085 - MER5A DNA MER1_type -1 188 4 828 142 61 7 chr1 92801464 92801612 -149862741 + MER5A DNA MER1_type 34 189 0 29 70 0 0 chr1 92802209 92802266 -149862087 + AT_rich Low_complexity Low_complexity 1 57 0 443 306 165 33 chr1 92802562 92802925 -149861428 - L2 LINE L2 -556 2758 2348 21 36 0 0 chr1 92803556 92803584 -149860769 + AT_rich Low_complexity Low_complexity 1 28 0 250 379 0 21 chr1 92804538 92804683 -149859670 + L2 LINE L2 2344 2485 -829 577 253 35 35 chr1 92804856 92805280 -149859073 + MLT1J LTR MaLR 2 613 -2 1055 317 52 17 chr1 92805361 92805781 -149858572 + MLT1K LTR MaLR 3 437 -151 21 36 0 0 chr1 92805872 92805900 -149858453 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 92806109 92806132 -149858221 + AT_rich Low_complexity Low_complexity 1 23 0 2017 144 29 29 chr1 92807508 92807882 -149856471 + THE1C LTR MaLR 1 374 -1 31 0 0 0 chr1 92808084 92808115 -149856238 + AT_rich Low_complexity Low_complexity 1 31 0 1951 183 67 22 chr1 92808324 92808775 -149855578 + MLT2D LTR ERVL 1 464 0 1451 235 58 7 chr1 92809143 92809555 -149854798 + HsTC2 DNA Tc2 1283 1891 -7 284 260 208 0 chr1 92809644 92809721 -149854632 - MER5A DNA MER1_type 0 189 97 184 339 152 30 chr1 92809856 92810021 -149854332 + MIR3 SINE MIR 17 201 -7 429 245 51 51 chr1 92810146 92810453 -149853900 + L1M4 LINE L1 91 627 -6228 199 194 0 0 chr1 92811303 92811339 -149853014 + L2 LINE L2 3273 3308 -5 490 285 52 31 chr1 92811886 92812174 -149852179 + L1ME3 LINE L1 5564 5857 -264 235 317 67 0 chr1 92812836 92812940 -149851413 - L2 LINE L2 -921 2393 2283 990 236 33 8 chr1 92813020 92813262 -149851091 - LTR16C LTR ERVL -2 489 242 5935 170 41 10 chr1 92814270 92816117 -149848236 - L1MC1 LINE L1 -2 6331 4429 1034 221 4 38 chr1 92816105 92816368 -149847985 + L1ME3 LINE L1 5901 6154 -8 * 239 295 0 0 chr1 92817376 92817437 -149846916 + MIR SINE MIR 198 258 -4 742 219 69 0 chr1 92817527 92817687 -149846666 - MER5B DNA MER1_type -7 171 1 398 200 183 8 chr1 92817687 92817802 -149846551 - MIR SINE MIR -46 216 81 409 188 167 0 chr1 92817834 92817930 -149846423 - MIR SINE MIR -61 201 90 456 203 106 111 chr1 92818208 92818363 -149845990 - MER112 DNA MER1_type -38 222 67 372 22 0 0 chr1 92818363 92818408 -149845945 + (TG)n Simple_repeat Simple_repeat 2 46 0 456 203 106 111 chr1 92818408 92818469 -149845884 - MER112 DNA MER1_type -193 67 7 29 47 0 0 chr1 92819366 92819409 -149844944 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr1 92820054 92820078 -149844275 + AT_rich Low_complexity Low_complexity 1 24 0 294 128 0 0 chr1 92820364 92820411 -149843942 - L1MA3 LINE L1 0 6305 6259 23 0 0 0 chr1 92820913 92820936 -149843417 + AT_rich Low_complexity Low_complexity 1 23 0 2723 196 47 49 chr1 92821424 92822081 -149842272 - LTR8A LTR ERV1 -38 689 34 1020 172 0 22 chr1 92822630 92822810 -149841543 - AluJo SINE Alu -56 256 81 2660 248 68 28 chr1 92822810 92823868 -149840485 + L1ME4a LINE L1 1848 2992 -3548 2318 64 3 10 chr1 92823868 92824166 -149840187 + AluY SINE Alu 1 296 -15 2660 248 68 28 chr1 92824166 92824794 -149839559 + L1ME4a LINE L1 2992 3593 -2947 5963 157 5 29 chr1 92824801 92825382 -149838971 + L1PA16 LINE L1 4321 4914 -1252 1948 125 7 0 chr1 92825382 92825670 -149838683 + AluSx SINE Alu 14 303 -9 5963 157 5 29 chr1 92825670 92826129 -149838224 + L1PA16 LINE L1 4914 5382 -784 1636 192 7 3 chr1 92826129 92826420 -149837933 + AluJo SINE Alu 1 292 -20 5963 157 5 29 chr1 92826420 92827240 -149837113 + L1PA16 LINE L1 5382 6140 -26 207 0 0 0 chr1 92827241 92827264 -149837089 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 251 167 10 98 chr1 92827265 92827320 -149837033 + L1ME4a LINE L1 3600 3644 -2896 2139 158 64 83 chr1 92827320 92827885 -149836468 - MLT2B3 LTR ERVL 0 554 1 251 167 10 98 chr1 92827885 92827931 -149836422 + L1ME4a LINE L1 3644 3692 -2848 433 118 15 0 chr1 92827935 92828003 -149836350 + FLAM SINE Alu 49 117 -26 222 37 0 0 chr1 92828006 92828033 -149836320 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2924 211 54 123 chr1 92828047 92828882 -149835471 + L1ME4a LINE L1 3700 4401 -2139 1930 136 20 3 chr1 92828882 92829183 -149835170 + AluSx SINE Alu 1 306 -6 2924 211 54 123 chr1 92829183 92829743 -149834610 + L1ME4a LINE L1 4401 4998 -1542 826 199 30 5 chr1 92829983 92830184 -149834169 + L1ME4a LINE L1 5505 5710 -830 5945 160 30 37 chr1 92830202 92831036 -149833317 - L1PA16 LINE L1 -9 6157 5318 2175 107 0 3 chr1 92831036 92831327 -149833026 - AluSc SINE Alu -19 290 1 5945 160 30 37 chr1 92831327 92832487 -149831866 - L1PA16 LINE L1 -848 5318 4175 2844 13 0 0 chr1 92832487 92832795 -149831558 - AluYb8 SINE Alu -10 308 1 5945 160 30 37 chr1 92832795 92832850 -149831503 - L1PA16 LINE L1 -1991 4175 4121 4181 150 38 20 chr1 92832846 92833657 -149830696 + L1MB2 LINE L1 5305 6130 -41 * 22 0 0 54 chr1 92833669 92833684 -149830669 + AT_rich Low_complexity Low_complexity 1 15 -20 1911 168 7 0 chr1 92833684 92833975 -149830378 + AluJo SINE Alu 1 293 -19 22 0 0 54 chr1 92833975 92833996 -149830357 + AT_rich Low_complexity Low_complexity 15 35 0 195 42 0 0 chr1 92835109 92835133 -149829220 + (T)n Simple_repeat Simple_repeat 1 24 0 2274 148 44 12 chr1 92837577 92837990 -149826363 + MSTB LTR MaLR 1 426 0 467 286 92 37 chr1 92838039 92838494 -149825859 + L1ME4a LINE L1 6003 6482 -33 349 257 159 18 chr1 92840432 92840545 -149823808 + MIR SINE MIR 7 135 -127 22 0 0 0 chr1 92841538 92841560 -149822793 + GC_rich Low_complexity Low_complexity 1 22 0 191 290 50 40 chr1 92842529 92842629 -149821724 - MIR SINE MIR -6 256 156 476 299 0 0 chr1 92844553 92844670 -149819683 - MIR SINE MIR -94 168 52 23 0 0 0 chr1 92844761 92844784 -149819569 + AT_rich Low_complexity Low_complexity 1 23 0 246 302 0 35 chr1 92844959 92845059 -149819294 - MER5B DNA MER1_type -83 106 10 378 305 112 21 chr1 92845376 92845707 -149818646 - L1 LINE L1 -1554 4592 4232 1430 200 15 0 chr1 92845747 92846017 -149818336 + AluJo SINE Alu 1 274 -38 27 49 0 0 chr1 92846019 92846060 -149818293 + AT_rich Low_complexity Low_complexity 1 41 0 563 312 60 36 chr1 92846232 92847218 -149817135 - L1 LINE L1 -2210 3936 2905 423 152 0 0 chr1 92847379 92847458 -149816895 + (TG)n Simple_repeat Simple_repeat 2 80 0 1377 181 91 0 chr1 92847491 92847745 -149816608 + AluJo SINE Alu 15 291 -21 1865 154 109 3 chr1 92847746 92848076 -149816277 + MLT1A1 LTR MaLR 1 365 0 2274 103 57 14 chr1 92848853 92849202 -149815151 - THE1C LTR MaLR -11 364 1 451 368 72 27 chr1 92849268 92849670 -149814683 - HAL1 LINE L1 -685 1822 1403 798 164 0 0 chr1 92849676 92849798 -149814555 + FLAM_C SINE Alu 1 122 -11 22 0 0 0 chr1 92853147 92853169 -149811184 + AT_rich Low_complexity Low_complexity 1 22 0 231 36 0 0 chr1 92853256 92853284 -149811069 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1547 222 3 13 chr1 92853621 92853936 -149810417 - AluJo SINE Alu 0 312 1 238 313 36 27 chr1 92853937 92854049 -149810304 + LTR67 LTR ERVL 431 543 -14 3100 272 100 31 chr1 92854099 92855308 -149809045 + L1MCc LINE L1 51 1369 -5054 1833 176 0 22 chr1 92855308 92855627 -149808726 + AluJo SINE Alu 1 312 0 3100 272 100 31 chr1 92855627 92855798 -149808555 + L1MCc LINE L1 1369 1527 -4896 1510 113 0 0 chr1 92855934 92856155 -149808198 - L1PA13 LINE L1 -436 5725 5505 2688 117 21 0 chr1 92856155 92856567 -149807786 + L1PA13 LINE L1 5737 6163 0 1624 252 44 7 chr1 92856603 92857031 -149807322 - L2 LINE L2 -795 2519 2076 1137 236 53 19 chr1 92857570 92858017 -149806336 + MER74A LTR ERVL 1 545 -13 2274 93 3 16 chr1 92858334 92858646 -149805707 - AluSc SINE Alu -1 308 1 210 91 0 0 chr1 92858762 92858795 -149805558 + (TA)n Simple_repeat Simple_repeat 2 34 0 2309 98 3 0 chr1 92858991 92859296 -149805057 - AluSp SINE Alu -7 306 1 42 78 0 9 chr1 92859783 92859795 -149804558 + AT_rich Low_complexity Low_complexity 1 12 -103 515 101 13 0 chr1 92859795 92859874 -149804479 + MADE1 DNA Mariner 1 80 0 42 78 0 9 chr1 92859874 92859977 -149804376 + AT_rich Low_complexity Low_complexity 12 115 0 568 221 136 7 chr1 92861030 92861184 -149803169 - MIR SINE MIR -42 220 47 204 253 147 13 chr1 92861363 92861438 -149802915 + L2 LINE L2 3134 3218 -54 341 340 146 0 chr1 92861650 92861794 -149802559 - MIR3 SINE MIR -6 202 38 1731 195 132 11 chr1 92862560 92863006 -149801347 + MER101B LTR ERV1 4 503 -67 2714 103 87 18 chr1 92863213 92863648 -149800705 - MER4C LTR ERV1 0 465 1 7251 169 49 36 chr1 92863656 92864175 -149800178 - MER4C-int LTR ERV1 -2 6596 6085 2459 96 8 8 chr1 92864175 92864530 -149799823 - THE1A LTR MaLR 0 355 1 7251 169 49 36 chr1 92864530 92864702 -149799651 - MER4C-int LTR ERV1 -513 6085 5917 222 37 0 0 chr1 92864702 92864729 -149799624 + (TC)n Simple_repeat Simple_repeat 2 28 0 7251 169 49 36 chr1 92864729 92865757 -149798596 - MER4C-int LTR ERV1 -681 5917 4854 460 296 117 0 chr1 92866514 92866676 -149797677 - MIR SINE MIR -79 183 3 1872 106 8 8 chr1 92866761 92867017 -149797336 - AluSg SINE Alu -8 302 47 429 320 77 26 chr1 92867884 92868196 -149796157 + MLT1I LTR MaLR 79 406 -3 433 304 83 25 chr1 92868351 92868555 -149795798 - L3 LINE CR1 -1 1576 1361 668 346 13 36 chr1 92868794 92869097 -149795256 - L3 LINE CR1 -338 1239 944 663 130 9 0 chr1 92869518 92869626 -149794727 + MLT1B LTR MaLR 281 389 -1 1630 174 10 0 chr1 92870242 92870536 -149793817 + ERVL-B1 LTR ERVL 2208 2504 -3260 365 61 0 0 chr1 92870536 92870585 -149793768 - MADE1 DNA Mariner 0 80 32 1067 89 0 0 chr1 92870586 92870721 -149793632 + AluSq/x SINE Alu 2 136 -176 2099 91 25 0 chr1 92870721 92871025 -149793328 + AluSx SINE Alu 1 311 0 272 95 0 0 chr1 92871043 92871085 -149793268 - MADE1 DNA Mariner -34 46 5 7864 164 38 19 chr1 92871089 92871628 -149792725 + ERVL-B1 LTR ERVL 2503 3031 -2733 3442 65 23 0 chr1 92871628 92872062 -149792291 + MLT2A1 LTR ERVL 1 444 0 7864 164 38 19 chr1 92872062 92873009 -149791344 + ERVL-B1 LTR ERVL 3031 4016 -1748 2499 108 17 6 chr1 92873009 92873369 -149790984 - THE1B LTR MaLR 0 364 1 7523 129 53 12 chr1 92873371 92874583 -149789770 - THE1B-int LTR MaLR -9 1571 310 988 138 18 0 chr1 92874560 92874727 -149789626 - THE1B-int LTR MaLR -1410 170 1 * 2452 114 19 6 chr1 92874727 92875086 -149789267 - THE1B LTR MaLR 0 364 1 9095 150 54 13 chr1 92875086 92876761 -149787592 + ERVL-B1 LTR ERVL 4012 5755 -9 1729 179 215 25 chr1 92876762 92877160 -149787193 + MLT2B1 LTR ERVL 1 491 -29 504 32 0 0 chr1 92877160 92877222 -149787131 + (CA)n Simple_repeat Simple_repeat 2 63 0 1729 179 215 25 chr1 92877222 92877260 -149787093 + MLT2B1 LTR ERVL 491 520 0 673 243 90 5 chr1 92877399 92877588 -149786765 + MIR SINE MIR 57 261 -1 295 122 0 0 chr1 92877606 92877647 -149786706 + MLT2B1 LTR ERVL 388 428 -92 5184 205 26 4 chr1 92878149 92879434 -149784919 - L1 LINE L1 -2007 4139 2826 1117 175 0 0 chr1 92879451 92879674 -149784679 + L1 LINE L1 4475 4697 -1449 473 157 20 0 chr1 92879717 92879819 -149784534 - L1 LINE L1 -3327 2819 2716 * 2218 164 82 1 chr1 92879816 92881243 -149783110 - L1PBa LINE L1 -5157 1706 16 6160 281 61 15 chr1 92881258 92883314 -149781039 + ERVL-F LTR ERVL 2685 4835 -929 688 192 42 0 chr1 92883316 92883483 -149780870 + MER96B DNA MER1_type? 3 176 -241 1102 264 26 18 chr1 92883752 92884093 -149780260 + ERVL-F LTR ERVL 4829 5172 -592 1385 221 31 9 chr1 92884094 92884443 -149779910 + L1MB7 LINE L1 5818 6174 -10 846 244 107 72 chr1 92884601 92885032 -149779321 + ERVL-F LTR ERVL 5308 5753 -11 1169 285 94 35 chr1 92885036 92885661 -149778692 + MLT2F LTR ERVL 2 663 0 391 314 20 26 chr1 92885689 92885842 -149778511 - MIR SINE MIR -5 257 106 2084 121 6 25 chr1 92886196 92886511 -149777842 + AluSp SINE Alu 1 309 -4 2115 112 0 0 chr1 92887326 92887603 -149776750 + AluSc SINE Alu 4 280 -29 23000 19 0 0 chr1 92887768 92891014 -149773339 + L1P1 LINE L1 2550 5794 -361 1732 203 63 47 chr1 92891331 92891824 -149772529 + MLT1D LTR MaLR 4 504 -1 22 56 0 0 chr1 92892031 92892067 -149772286 + AT_rich Low_complexity Low_complexity 1 36 0 313 254 19 144 chr1 92892873 92893137 -149771216 - MIR SINE MIR 0 262 32 1383 177 141 128 chr1 92893400 92893947 -149770406 - MLT2B3 LTR ERVL 0 554 1 288 244 191 0 chr1 92894002 92894031 -149770322 - L1MA10 LINE L1 -10 6324 6296 2791 222 43 28 chr1 92894031 92895074 -149769279 - L1ME1 LINE L1 -48 6118 5063 1918 253 27 27 chr1 92895071 92895256 -149769097 + L1M4 LINE L1 3515 3699 -2447 * 2178 97 6 35 chr1 92895256 92895575 -149768778 + AluSx SINE Alu 1 310 -2 1918 253 27 27 chr1 92895575 92896022 -149768331 + L1M4 LINE L1 3698 4147 -1999 1716 211 58 50 chr1 92896039 92896147 -149768206 + L1M4 LINE L1 4385 4491 -1655 2391 82 3 0 chr1 92896147 92896441 -149767912 + AluSx SINE Alu 6 300 -12 1716 211 58 50 chr1 92896441 92896975 -149767378 + L1M4 LINE L1 4491 5032 -1114 466 297 29 26 chr1 92897022 92897369 -149766984 - L1M4 LINE L1 -3346 2800 2453 280 331 93 43 chr1 92897539 92897916 -149766437 - L2 LINE L2 -191 3081 2689 226 331 61 31 chr1 92897957 92898120 -149766233 + MLT1J LTR MaLR 7 174 -337 216 0 0 0 chr1 92898187 92898211 -149766142 + (T)n Simple_repeat Simple_repeat 1 24 0 405 356 35 10 chr1 92898998 92899200 -149765153 + L1M4 LINE L1 4925 5131 -1015 207 162 0 0 chr1 92899221 92899258 -149765095 + A-rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 92899294 92899317 -149765036 + AT_rich Low_complexity Low_complexity 1 23 0 1006 96 0 0 chr1 92899704 92899850 -149764503 + HERVH LTR ERV1 1 146 -7567 * 1963 140 33 14 chr1 92899842 92900206 -149764147 + HERVH LTR ERV1 1769 2139 -5574 14671 49 65 4 chr1 92900213 92902236 -149762117 + L1P LINE L1 2 2148 -3998 379 276 23 19 chr1 92902486 92902700 -149761653 - L1MB2 LINE L1 -221 5950 5736 412 185 0 43 chr1 92902871 92902963 -149761390 + AluSc SINE Alu 186 273 -36 1413 197 0 55 chr1 92902964 92903254 -149761099 - AluJb SINE Alu -38 274 1 1808 105 25 13 chr1 92903427 92903742 -149760611 - L1P5 LINE L1 -547 5604 5286 1859 108 47 4 chr1 92903809 92904067 -149760286 - AluSg SINE Alu -7 303 35 229 218 26 0 chr1 92904412 92904490 -149759863 + GA-rich Low_complexity Low_complexity 1 80 0 1540 285 74 38 chr1 92904703 92905335 -149759018 + L2 LINE L2 2240 2894 -420 328 247 0 12 chr1 92905348 92905433 -149758920 + L2 LINE L2 2449 2532 -782 4274 116 28 37 chr1 92905436 92906194 -149758159 - Tigger3(Golem) DNA MER2_type -2 3027 2277 661 191 0 18 chr1 92906185 92906295 -149758058 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 3088 180 20 75 chr1 92907122 92907805 -149756548 - MER82 DNA MER2_type -7 646 1 321 388 12 0 chr1 92907909 92908074 -149756279 + HERV16 LTR ERVL 961 1127 -3869 512 321 31 0 chr1 92908307 92908466 -149755887 + HERV16 LTR ERVL 1410 1573 -3423 1836 322 20 29 chr1 92908548 92909263 -149755090 + HERV16 LTR ERVL 1798 2505 -3259 1238 241 78 17 chr1 92909391 92909735 -149754618 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr1 92910298 92910321 -149754032 + AT_rich Low_complexity Low_complexity 1 23 0 207 162 0 0 chr1 92910357 92910394 -149753959 + T-rich Low_complexity Low_complexity 1 37 0 406 356 35 10 chr1 92910415 92910617 -149753736 - L1M4 LINE L1 -1015 5131 4925 225 0 0 0 chr1 92911404 92911429 -149752924 + (A)n Simple_repeat Simple_repeat 1 25 0 274 331 61 31 chr1 92911496 92911659 -149752694 - MLT1J LTR MaLR -337 174 7 279 331 93 43 chr1 92911700 92912077 -149752276 + L2 LINE L2 2689 3081 -191 650 287 33 28 chr1 92912247 92912641 -149751712 + L1ME1 LINE L1 2453 2848 -3298 2062 209 55 49 chr1 92912641 92913176 -149751177 - L1M4 LINE L1 -1114 5032 4491 2380 82 3 0 chr1 92913176 92913470 -149750883 - AluSx SINE Alu -12 300 6 2062 209 55 49 chr1 92913470 92913584 -149750769 - L1M4 LINE L1 -1655 4491 4379 2086 253 27 27 chr1 92913595 92914042 -149750311 - L1M4 LINE L1 -1999 4147 3698 2143 97 6 38 chr1 92914042 92914361 -149749992 - AluSx SINE Alu -3 309 1 2086 253 27 27 chr1 92914361 92914546 -149749807 - L1M4 LINE L1 -2447 3699 3515 * 3012 223 47 28 chr1 92914543 92915616 -149748737 + L1ME1 LINE L1 5063 6324 -10 1381 177 141 128 chr1 92915671 92916218 -149748135 + MLT2B3 LTR ERVL 1 554 0 323 254 19 144 chr1 92916481 92916745 -149747608 + MIR SINE MIR 32 262 0 22 56 0 0 chr1 92917555 92917591 -149746762 + AT_rich Low_complexity Low_complexity 1 36 0 1991 203 51 26 chr1 92917798 92918290 -149746063 - MLT1D LTR MaLR -1 504 1 6418 84 15 20 chr1 92919120 92919248 -149745105 - L1PB1 LINE L1 -3 6148 6021 2290 110 0 0 chr1 92919248 92919557 -149744796 - AluSc SINE Alu 0 309 1 6418 84 15 20 chr1 92919557 92920403 -149743950 - L1PB1 LINE L1 -130 6021 5168 4694 109 74 75 chr1 92920403 92921761 -149742592 - MER4E-int LTR ERV1 -4085 2513 1266 474 18 0 0 chr1 92921779 92921834 -149742519 + (CA)n Simple_repeat Simple_repeat 2 56 0 5037 114 51 28 chr1 92921834 92922198 -149742155 - MER4E-int LTR ERV1 -5609 1149 795 180 0 0 0 chr1 92922198 92922218 -149742135 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 5037 114 51 28 chr1 92922218 92922924 -149741429 - MER4E-int LTR ERV1 -5963 795 1 788 53 35 18 chr1 92922924 92923037 -149741316 - MER4E LTR ERV1 0 766 652 513 117 106 0 chr1 92923387 92923481 -149740872 + Tigger4(Zombi) DNA MER2_type 1 104 -2627 228 293 57 57 chr1 92923584 92923830 -149740523 - L2 LINE L2 -700 2614 2369 23 54 0 0 chr1 92924149 92924186 -149740167 + AT_rich Low_complexity Low_complexity 1 37 0 211 365 71 46 chr1 92924330 92924527 -149739826 + MIR3 SINE MIR 5 206 -2 512 207 138 0 chr1 92926582 92926698 -149737655 - FLAM_A SINE Alu -2 140 9 358 238 59 20 chr1 92927757 92927858 -149736495 - L2 LINE L2 -1 3312 3208 1062 351 141 16 chr1 92928515 92929387 -149734966 + L2 LINE L2 542 1522 -1792 1137 266 61 25 chr1 92929387 92929897 -149734456 - MLT1G3 LTR MaLR 0 595 5 1774 163 0 10 chr1 92930629 92930935 -149733418 - AluJb SINE Alu -1 311 9 1405 253 100 96 chr1 92931228 92932408 -149731945 - L1ME3 LINE L1 -3 6228 5055 207 0 0 0 chr1 92932408 92932431 -149731922 + (TC)n Simple_repeat Simple_repeat 2 24 0 1405 253 100 96 chr1 92932431 92933577 -149730776 - L1ME3 LINE L1 -1176 5055 3818 412 221 185 54 chr1 92933609 92933831 -149730522 - L1ME3 LINE L1 -3230 2985 2735 183 80 0 0 chr1 92933849 92933874 -149730479 + (CA)n Simple_repeat Simple_repeat 1 25 0 1895 160 51 0 chr1 92933982 92934313 -149730040 + MER7A DNA MER2_type 1 346 0 652 308 57 20 chr1 92934453 92934908 -149729445 - L1ME3 LINE L1 -4690 1706 1235 395 272 142 22 chr1 92934927 92935159 -149729194 - L1ME3 LINE L1 -5336 1060 801 2265 247 44 62 chr1 92935911 92936604 -149727749 - L1ME3 LINE L1 -30 6132 5451 2365 155 28 113 chr1 92936604 92937172 -149727181 - MLT2B1 LTR ERVL 0 520 1 2265 247 44 62 chr1 92937172 92937612 -149726741 - L1ME3 LINE L1 -711 5451 5004 1893 262 112 9 chr1 92937621 92938204 -149726149 - L2 LINE L2 -1907 1407 765 21 57 0 0 chr1 92938544 92938579 -149725774 + AT_rich Low_complexity Low_complexity 1 35 0 2079 138 38 24 chr1 92939137 92939507 -149724846 - THE1C LTR MaLR 0 375 1 280 296 148 35 chr1 92939644 92939759 -149724594 - MIR SINE MIR -131 131 4 903 220 106 5 chr1 92939878 92940096 -149724257 - MIR SINE MIR -21 241 2 1758 179 28 43 chr1 92940193 92940584 -149723769 - MLT2C1 LTR ERVL 0 397 13 2090 92 0 59 chr1 92941247 92941552 -149722801 + AluSg SINE Alu 21 307 -3 569 236 99 107 chr1 92941910 92942292 -149722061 + MLT1G-int LTR MaLR 963 1341 -30 507 267 136 15 chr1 92942298 92942544 -149721809 + MLT1G LTR MaLR 1 285 -297 560 248 106 87 chr1 92942685 92942903 -149721450 + MLT1G LTR MaLR 374 590 0 4907 138 48 21 chr1 92942971 92943887 -149720466 - L1MA5 LINE L1 0 6300 5360 457 330 53 84 chr1 92944363 92944814 -149719539 + L2 LINE L2 2836 3272 0 23 0 0 0 chr1 92945050 92945073 -149719280 + AT_rich Low_complexity Low_complexity 1 23 0 750 199 15 0 chr1 92945926 92946062 -149718291 - MER3 DNA MER1_type -70 139 2 667 285 70 25 chr1 92946450 92946692 -149717661 + MIR SINE MIR 8 260 -2 21 36 0 0 chr1 92946955 92946983 -149717370 + AT_rich Low_complexity Low_complexity 1 28 0 213 341 130 8 chr1 92947831 92947954 -149716399 + MIR3 SINE MIR 36 173 -35 2396 85 0 0 chr1 92948734 92949028 -149715325 + AluSq SINE Alu 7 300 -13 210 265 0 0 chr1 92949481 92949549 -149714804 + (CA)n Simple_repeat Simple_repeat 2 69 0 400 293 204 64 chr1 92950457 92950894 -149713459 - L1M2 LINE L1 -5518 1331 834 758 267 47 0 chr1 92951733 92951924 -149712429 - MIR SINE MIR -55 207 8 442 205 8 41 chr1 92953158 92953280 -149711073 - MIR SINE MIR -88 174 57 297 0 0 0 chr1 92954196 92954229 -149710124 + (TA)n Simple_repeat Simple_repeat 1 33 0 543 256 48 0 chr1 92955232 92955357 -149708996 + L2 LINE L2 3183 3313 0 468 252 184 48 chr1 92955678 92955928 -149708425 - MLT1K LTR MaLR -7 581 298 3125 174 29 59 chr1 92957052 92957878 -149706475 - Charlie1 DNA MER1_type -1 2760 1960 375 280 36 10 chr1 92959102 92959236 -149705117 + MER5A DNA MER1_type 13 177 -1 883 188 81 0 chr1 92959620 92959780 -149704573 + MER5A DNA MER1_type 2 174 -15 1278 139 18 44 chr1 92960203 92960476 -149703877 + L1MD3 LINE L1 7730 7995 0 22 0 0 0 chr1 92960912 92960934 -149703419 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 92961873 92961896 -149702457 + AT_rich Low_complexity Low_complexity 1 23 0 907 232 12 41 chr1 92962865 92963111 -149701242 + MIR SINE MIR 11 249 -13 409 308 181 20 chr1 92963530 92963859 -149700494 - L2 LINE L2 -219 3053 2672 1230 274 216 26 chr1 92965055 92965609 -149698744 - L2 LINE L2 -828 2486 2039 2140 99 0 75 chr1 92965609 92965942 -149698411 + AluSg SINE Alu 1 308 -2 1230 274 216 26 chr1 92965942 92966201 -149698152 - L2 LINE L2 -1275 2039 1518 1500 152 37 77 chr1 92966457 92966754 -149697599 + AluJo SINE Alu 1 285 -27 1858 139 33 9 chr1 92967242 92967572 -149696781 + MER44D DNA MER2_type 1 608 -1 1455 218 22 0 chr1 92967778 92968053 -149696300 - AluJb SINE Alu -31 281 1 882 255 57 16 chr1 92968459 92968706 -149695647 - MIR SINE MIR 0 262 6 2141 173 25 41 chr1 92969052 92969441 -149694912 + MSTB1 LTR MaLR 1 384 -48 2039 141 16 0 chr1 92969441 92969745 -149694608 + AluSx SINE Alu 1 309 -3 2141 173 25 41 chr1 92969745 92969794 -149694559 + MSTB1 LTR MaLR 384 432 0 332 292 60 137 chr1 92969847 92970162 -149694191 - L2 LINE L2 -91 3181 2891 1633 183 3 14 chr1 92972689 92972984 -149691369 - AluJb SINE Alu -20 292 1 2435 88 7 0 chr1 92973857 92974162 -149690191 - AluSg SINE Alu -3 307 1 2269 85 3 0 chr1 92974398 92974704 -149689649 - AluSp SINE Alu 0 309 3 682 205 0 24 chr1 92974759 92974886 -149689467 + L2 LINE L2 3190 3313 0 2186 96 7 0 chr1 92975110 92975421 -149688932 - AluSp SINE Alu 0 313 1 327 364 68 6 chr1 92976266 92976442 -149687911 + MIR3 SINE MIR 9 195 -13 322 258 19 43 chr1 92976558 92976671 -149687682 - MIR3 SINE MIR -48 160 51 255 346 81 16 chr1 92977139 92977324 -149687029 + L2 LINE L2 2344 2540 -774 763 254 105 5 chr1 92977389 92977598 -149686755 + MIR SINE MIR 13 242 -20 2167 117 3 0 chr1 92977601 92977901 -149686452 - AluSx SINE Alu -11 301 1 743 92 21 35 chr1 92977903 92978045 -149686308 - MER39B LTR ERV1 -513 140 1 341 240 0 0 chr1 92979009 92979101 -149685252 - L1ME LINE L1 -470 5692 5598 * 30394 101 13 61 chr1 92979098 92985557 -149678796 - L1PA7 LINE L1 -4 6150 12 244 254 0 0 chr1 92985977 92986032 -149678321 + (TA)n Simple_repeat Simple_repeat 2 56 0 1780 186 7 0 chr1 92986402 92986698 -149677655 + AluJo SINE Alu 1 298 -14 7585 22 1 2 chr1 92986698 92987768 -149676585 + L1PA4 LINE L1 5074 6142 -13 1116 275 153 25 chr1 92987879 92988483 -149675870 - L2 LINE L2 0 3313 2622 2226 100 7 7 chr1 92988492 92988792 -149675561 - AluSx SINE Alu -12 300 1 240 254 17 17 chr1 92989700 92989759 -149674594 - L2 LINE L2 0 3272 3214 631 250 27 68 chr1 92991753 92991996 -149672357 + MIR SINE MIR 11 249 -13 813 320 60 45 chr1 92992920 92993435 -149670918 + L2 LINE L2 1753 2275 -1039 2154 102 13 26 chr1 92993778 92994082 -149670271 + AluSx SINE Alu 1 300 -12 237 202 10 39 chr1 92995138 92995242 -149669111 + (TA)n Simple_repeat Simple_repeat 1 101 0 21 0 0 0 chr1 92996143 92996164 -149668189 + AT_rich Low_complexity Low_complexity 1 21 0 692 270 41 91 chr1 92996242 92996522 -149667831 + MIR SINE MIR 1 258 -4 2025 112 34 7 chr1 92996601 92996896 -149667457 - AluSx SINE Alu -9 303 1 1211 29 0 0 chr1 92997171 92997309 -149667044 + AluY SINE Alu 158 295 -16 257 353 15 2 chr1 92998006 92998214 -149666139 + L1MCc LINE L1 1226 1646 -4983 231 36 0 0 chr1 92998687 92998715 -149665638 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 257 308 119 7 chr1 92998946 92999089 -149665264 - L2 LINE L2 -1112 2202 2044 347 318 29 73 chr1 92999218 92999492 -149664861 - L2 LINE L2 -1492 1822 1561 220 224 20 0 chr1 92999546 92999595 -149664758 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1473 167 22 44 chr1 93000027 93000302 -149664051 - AluJo SINE Alu 0 312 44 2063 79 4 4 chr1 93001140 93001407 -149662946 - AluY SINE Alu -3 308 42 296 319 68 8 chr1 93001901 93002019 -149662334 - MIR SINE MIR -32 176 53 2195 65 0 7 chr1 93002083 93002360 -149661993 + AluY SINE Alu 1 275 -36 396 0 0 0 chr1 93002360 93002404 -149661949 + (TAA)n Simple_repeat Simple_repeat 2 45 0 22 56 0 0 chr1 93002778 93002814 -149661539 + AT_rich Low_complexity Low_complexity 1 36 0 503 211 186 50 chr1 93002850 93003049 -149661304 - MIR SINE MIR -30 232 7 226 205 0 0 chr1 93003872 93003911 -149660442 - L2 LINE L2 -12 3301 3263 245 353 37 25 chr1 93004043 93004287 -149660066 + L2 LINE L2 2816 3062 -210 254 321 128 0 chr1 93004351 93004460 -149659893 - L3 LINE CR1 -5 1572 1450 847 283 178 30 chr1 93004487 93004957 -149659396 - L2 LINE L2 0 3313 2776 1096 340 93 29 chr1 93004964 93005684 -149658669 - L3 LINE CR1 -197 1380 615 210 314 105 0 chr1 93005690 93005776 -149658577 + L2 LINE L2 3200 3294 -19 1445 232 74 32 chr1 93005801 93006181 -149658172 + MSTD LTR MaLR 1 396 0 877 234 25 39 chr1 93006182 93006468 -149657885 - THE1B-int LTR MaLR -1039 612 331 693 153 0 8 chr1 93006471 93006602 -149657751 + MSTB2 LTR MaLR 328 457 0 1601 144 21 68 chr1 93007122 93007543 -149656810 - AluJb SINE Alu 0 406 1 2694 111 12 9 chr1 93008672 93009097 -149655256 - L1MA6 LINE L1 -1 6299 5874 3733 146 14 23 chr1 93009097 93009575 -149654778 + L1MA6 LINE L1 4920 5401 -899 2445 122 14 3 chr1 93009575 93009935 -149654418 - THE1B LTR MaLR 0 364 1 3733 146 14 23 chr1 93009935 93009989 -149654364 + L1MA6 LINE L1 5401 5454 -846 2381 103 3 0 chr1 93009989 93010299 -149654054 - AluSp SINE Alu 0 313 3 3733 146 14 23 chr1 93010299 93010748 -149653605 + L1MA6 LINE L1 5454 5888 -412 1168 157 0 0 chr1 93010766 93010938 -149653415 - FRAM SINE Alu -10 166 1 580 246 0 103 chr1 93011859 93011984 -149652369 + MIR SINE MIR 81 179 -83 2557 57 0 0 chr1 93011984 93012285 -149652068 + AluY SINE Alu 1 301 -10 580 246 0 103 chr1 93012285 93012362 -149651991 + MIR SINE MIR 179 262 0 842 114 23 38 chr1 93012540 93012672 -149651681 + FLAM_C SINE Alu 1 130 -3 208 245 19 19 chr1 93012856 93012909 -149651444 - L2 LINE L2 -18 3295 3243 313 314 0 12 chr1 93012914 93013000 -149651353 - MIR SINE MIR -111 151 67 506 368 158 9 chr1 93014096 93014873 -149649480 - L2 LINE L2 -463 2851 1959 396 293 10 0 chr1 93014868 93014967 -149649386 + L2 LINE L2 3172 3271 -1 * 698 311 34 38 chr1 93016144 93016379 -149647974 - MIR SINE MIR -3 259 26 207 0 0 0 chr1 93016828 93016851 -149647502 + (TC)n Simple_repeat Simple_repeat 2 24 0 522 0 0 0 chr1 93016852 93016910 -149647443 + (CA)n Simple_repeat Simple_repeat 2 59 0 377 274 55 85 chr1 93016911 93017112 -149647241 + MER102b DNA MER1_type 133 327 -14 182 304 157 10 chr1 93017125 93017227 -149647126 - MIR3 SINE MIR -48 160 44 471 301 26 6 chr1 93018786 93018942 -149645411 + Charlie8 DNA MER1_type 1 159 -2258 290 179 0 15 chr1 93019452 93019519 -149644834 + (TA)n Simple_repeat Simple_repeat 1 66 0 184 206 0 0 chr1 93021312 93021346 -149643007 - L2 LINE L2 -71 3201 3168 15749 137 34 22 chr1 93022157 93024229 -149640124 + Tigger2 DNA MER2_type 1 2113 -605 1528 185 6 66 chr1 93024229 93024548 -149639805 + AluJb SINE Alu 1 300 -12 15749 137 34 22 chr1 93024548 93025162 -149639191 + Tigger2 DNA MER2_type 2113 2718 0 203 254 149 0 chr1 93025181 93025248 -149639105 + MIR SINE MIR 168 244 -18 249 311 14 0 chr1 93025400 93025474 -149638879 + MIR SINE MIR 166 240 -22 194 254 42 0 chr1 93026456 93026527 -149637826 - MIR SINE MIR -3 259 186 1014 148 117 0 chr1 93027033 93027229 -149637124 - MER20 DNA MER1_type 0 219 1 468 340 123 39 chr1 93027725 93027939 -149636414 + L2 LINE L2 2218 2413 -859 2313 113 3 0 chr1 93027939 93028249 -149636104 - AluSp SINE Alu -2 311 1 468 340 123 39 chr1 93028249 93028913 -149635440 + L2 LINE L2 2413 3223 -49 485 321 30 12 chr1 93030861 93031029 -149633324 + MER5A DNA MER1_type 19 189 0 486 203 17 25 chr1 93031137 93031255 -149633098 - FLAM_C SINE Alu -23 120 4 21 36 0 0 chr1 93031327 93031355 -149632998 + AT_rich Low_complexity Low_complexity 1 28 0 1758 168 7 11 chr1 93031356 93031641 -149632712 + AluJo SINE Alu 1 284 -28 279 79 0 0 chr1 93031641 93031679 -149632674 + (TATG)n Simple_repeat Simple_repeat 2 39 0 450 0 0 0 chr1 93031682 93031732 -149632621 + (GA)n Simple_repeat Simple_repeat 1 50 0 1978 126 7 0 chr1 93031756 93032033 -149632320 - AluSx SINE Alu -33 279 1 195 42 0 0 chr1 93032041 93032065 -149632288 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 266 158 18 53 chr1 93032224 93032281 -149632072 + MIR SINE MIR 208 262 0 286 284 9 17 chr1 93032946 93033062 -149631291 - L1MEd LINE L1 -5046 1073 959 226 320 107 7 chr1 93033219 93033500 -149630853 - L1MEd LINE L1 -5189 930 622 344 196 31 62 chr1 93033904 93034001 -149630352 + L2 LINE L2 2987 3080 -192 750 194 56 0 chr1 93034118 93034278 -149630075 + MER58A DNA MER1_type 45 213 -11 418 233 9 69 chr1 93034285 93034401 -149629952 + L2 LINE L2 3204 3312 -1 350 270 185 5 chr1 93034592 93034803 -149629550 + MIR SINE MIR 8 256 -6 226 173 14 0 chr1 93035217 93035267 -149629086 + MIR SINE MIR 66 119 -89 1236 136 0 0 chr1 93035270 93035447 -149628906 - AluSg/x SINE Alu -2 310 134 2107 112 30 0 chr1 93035447 93035742 -149628611 - AluSx SINE Alu -8 304 1 513 306 131 4 chr1 93035978 93036207 -149628146 + MIR SINE MIR 5 262 0 22 0 0 0 chr1 93037132 93037154 -149627199 + AT_rich Low_complexity Low_complexity 1 22 0 688 154 0 0 chr1 93038473 93038577 -149625776 + 7SLRNA srpRNA srpRNA 214 317 -3 555 313 25 30 chr1 93038700 93038898 -149625455 - MIR SINE MIR -60 202 6 2015 165 13 7 chr1 93039432 93039799 -149624554 + AluJb SINE Alu 1 369 0 566 255 181 0 chr1 93040120 93040308 -149624045 - MIR SINE MIR -13 249 28 680 328 27 93 chr1 93040997 93041482 -149622871 - L2 LINE L2 0 3272 2820 454 281 72 26 chr1 93041921 93042074 -149622279 - MIR SINE MIR -74 188 29 462 313 40 13 chr1 93043034 93043184 -149621169 + MIR SINE MIR 32 185 -77 2345 87 0 32 chr1 93044375 93044686 -149619667 - AluSc SINE Alu -8 301 1 452 289 0 0 chr1 93045134 93045255 -149619098 + MER94 DNA DNA 1 121 -13 1380 144 216 26 chr1 93045742 93046159 -149618194 - LTR54B LTR ERV1 -2 496 1 22 0 0 0 chr1 93046160 93046182 -149618171 + AT_rich Low_complexity Low_complexity 1 22 0 327 203 0 0 chr1 93047315 93047394 -149616959 + CT-rich Low_complexity Low_complexity 2 80 0 452 127 15 60 chr1 93047733 93047867 -149616486 + CT-rich Low_complexity Low_complexity 2 129 0 1234 167 65 20 chr1 93047971 93048277 -149616076 - MER33 DNA MER1_type 0 324 5 238 323 110 59 chr1 93048439 93048776 -149615577 - L2 LINE L2 -4 3268 2915 395 295 64 64 chr1 93048997 93049231 -149615122 + MIR SINE MIR 2 235 -27 303 308 58 58 chr1 93049382 93049606 -149614747 - L2 LINE L2 -666 2648 2425 775 248 84 53 chr1 93049964 93050343 -149614010 - MLT1J1 LTR MaLR -29 417 27 183 371 45 0 chr1 93050380 93050469 -149613884 - L2 LINE L2 -1371 1943 1851 183 42 0 0 chr1 93052933 93052957 -149611396 + (TTG)n Simple_repeat Simple_repeat 2 25 0 569 296 25 83 chr1 93053310 93053587 -149610766 - MIR SINE MIR 0 262 2 243 282 16 66 chr1 93054165 93054260 -149610093 + MIR SINE MIR 20 111 -97 191 71 0 0 chr1 93054526 93054554 -149609799 - L2 LINE L2 0 3313 3286 307 253 27 13 chr1 93056342 93056417 -149607936 - L3 LINE CR1 -7 1570 1495 809 197 27 16 chr1 93056439 93056622 -149607731 - MER5A DNA MER1_type -2 187 3 636 214 9 0 chr1 93056684 93056796 -149607557 - MER81 DNA DNA -1 113 1 234 251 69 46 chr1 93056862 93057037 -149607316 - MER65A LTR ERV1 0 445 267 225 213 43 0 chr1 93057167 93057214 -149607139 - MER65B LTR ERV1 -403 128 80 424 130 114 73 chr1 93057220 93057343 -149607010 - MER65B LTR ERV1 -403 128 1 198 303 156 49 chr1 93057369 93057613 -149606740 - L3 LINE CR1 -91 1486 1217 402 246 63 8 chr1 93057733 93057859 -149606494 + MIR SINE MIR 87 219 -43 375 23 0 0 chr1 93058083 93058127 -149606226 + (TG)n Simple_repeat Simple_repeat 2 45 0 258 105 0 0 chr1 93058784 93058822 -149605531 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 362 373 109 32 chr1 93058833 93059117 -149605236 - L2 LINE L2 0 3272 2967 227 314 110 23 chr1 93059216 93059480 -149604873 - L2 LINE L2 -468 2846 2560 450 327 13 0 chr1 93059480 93059633 -149604720 + MER115 DNA AcHobo 2 156 -537 338 169 0 14 chr1 93059832 93059903 -149604450 + MER115 DNA AcHobo 425 494 -199 907 217 0 15 chr1 93060044 93060242 -149604111 + MER115 DNA AcHobo 499 693 0 186 71 0 0 chr1 93061210 93061238 -149603115 + (T)n Simple_repeat Simple_repeat 1 28 0 522 236 81 23 chr1 93063606 93063780 -149600573 + L1ME4a LINE L1 5938 6121 0 491 211 39 23 chr1 93064132 93064260 -149600093 + MIR SINE MIR 122 251 -11 240 35 0 0 chr1 93064607 93064636 -149599717 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1326 220 71 43 chr1 93066116 93066565 -149597788 - MLT1C LTR MaLR -1 466 1 603 241 58 40 chr1 93066714 93066888 -149597465 + MIR SINE MIR 16 192 -70 488 233 117 34 chr1 93066893 93067113 -149597240 - MLT1L LTR MaLR -6 609 279 1038 260 67 19 chr1 93067188 93067931 -149596422 + ERVL LTR ERVL 3 861 -4135 689 307 180 0 chr1 93068020 93068287 -149596066 + ERVL LTR ERVL 2576 2890 -2106 1038 207 5 5 chr1 93068293 93068481 -149595872 + MER58A DNA MER1_type 27 214 -10 1705 337 7 19 chr1 93068496 93068810 -149595543 + ERVL LTR ERVL 2934 3250 -2514 4841 172 31 40 chr1 93068810 93069675 -149594678 - MER21B LTR ERV1 -3 860 4 1705 337 7 19 chr1 93069675 93070037 -149594316 + ERVL LTR ERVL 3250 3602 -2162 1526 315 73 30 chr1 93070049 93071096 -149593257 + ERVL LTR ERVL 3427 4822 -621 528 277 103 11 chr1 93071396 93071580 -149592773 - MIR3 SINE MIR -3 205 5 210 105 0 0 chr1 93072101 93072139 -149592214 + (T)n Simple_repeat Simple_repeat 1 38 0 1074 259 157 5 chr1 93072453 93072835 -149591518 + MLT1J LTR MaLR 72 511 0 974 183 80 23 chr1 93072835 93073095 -149591258 + MER33 DNA MER1_type 49 323 -1 273 355 16 8 chr1 93073138 93073262 -149591091 - MIR SINE MIR -126 136 12 2232 76 7 0 chr1 93074609 93074927 -149589426 + AluSg SINE Alu 1 320 0 920 271 117 55 chr1 93076122 93076594 -149587759 + MLT1J LTR MaLR 11 511 0 191 205 0 0 chr1 93080069 93080108 -149584245 + MIR SINE MIR 77 115 -93 455 299 128 0 chr1 93081159 93081346 -149583007 + MIR SINE MIR 37 247 -15 218 306 176 19 chr1 93081651 93081759 -149582594 + MIR3 SINE MIR 30 154 -54 404 315 96 0 chr1 93082126 93082304 -149582049 + MIR SINE MIR 65 259 -3 924 140 0 37 chr1 93082321 93082457 -149581896 + FLAM_A SINE Alu 1 131 -2 296 281 157 13 chr1 93082807 93082960 -149581393 + MIR3 SINE MIR 19 193 -15 205 139 0 28 chr1 93084305 93084341 -149580012 - MIR SINE MIR -118 144 110 24 0 0 0 chr1 93084435 93084459 -149579894 + AT_rich Low_complexity Low_complexity 1 24 0 7267 65 6 10 chr1 93084459 93085998 -149578355 - L1PA10 LINE L1 -5 6163 4617 914 245 119 21 chr1 93086096 93086431 -149577922 + MLT1J1 LTR MaLR 33 400 -46 243 358 62 40 chr1 93086760 93087081 -149577272 + L2 LINE L2 1108 1435 -1879 2050 194 39 36 chr1 93087102 93087556 -149576797 - MLT2B1 LTR ERVL 0 444 1 26 50 0 0 chr1 93087645 93087685 -149576668 + AT_rich Low_complexity Low_complexity 1 40 0 3043 198 69 6 chr1 93087734 93088370 -149575983 - L1MB4 LINE L1 -3 6177 5502 11205 194 29 38 chr1 93088615 93089417 -149574936 + L1PA15 LINE L1 1253 2061 -4736 2222 101 48 77 chr1 93089417 93089586 -149574767 + THE1B LTR MaLR 1 173 -191 2263 121 0 0 chr1 93089586 93089891 -149574462 + AluSx SINE Alu 1 305 -7 2222 101 48 77 chr1 93089891 93090096 -149574257 + THE1B LTR MaLR 173 364 0 12944 78 11 1 chr1 93090096 93091657 -149572696 + THE1B-int LTR MaLR 1 1577 -3 2269 101 52 60 chr1 93091660 93092027 -149572326 + THE1B LTR MaLR 1 364 0 11205 194 29 38 chr1 93092027 93094590 -149569763 + L1PA15 LINE L1 2062 4625 -2172 6346 184 18 6 chr1 93094607 93096585 -149567768 + L1PA15 LINE L1 4811 6809 -7 437 221 158 38 chr1 93096896 93097054 -149567299 + MER69A DNA AcHobo 1 177 0 23 0 0 0 chr1 93097206 93097229 -149567124 + AT_rich Low_complexity Low_complexity 1 23 0 1920 170 47 30 chr1 93098962 93099327 -149565026 - MLT1A2 LTR MaLR 0 374 4 2538 206 84 18 chr1 93100788 93101385 -149562968 - L1ME2 LINE L1 -81 6083 5448 509 279 142 12 chr1 93101905 93102127 -149562226 - MIR SINE MIR -12 250 2 217 323 46 102 chr1 93103041 93103326 -149561027 + L2 LINE L2 2893 3161 -111 395 379 19 49 chr1 93103703 93103967 -149560386 - L2 LINE L2 -61 3211 2956 512 335 113 12 chr1 93103999 93104318 -149560035 - L2 LINE L2 -503 2811 2461 281 298 131 24 chr1 93104349 93104517 -149559836 - L2 LINE L2 -965 2349 2164 187 294 39 0 chr1 93104648 93104699 -149559654 + L2 LINE L2 3206 3258 -14 206 216 0 0 chr1 93104872 93104909 -149559444 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 57 0 0 chr1 93104990 93105025 -149559328 + AT_rich Low_complexity Low_complexity 1 35 0 279 75 0 57 chr1 93105312 93105365 -149558988 + L1PA14 LINE L1 6111 6160 -1 239 303 91 30 chr1 93105699 93105798 -149558555 + L2 LINE L2 3148 3252 -20 323 270 78 26 chr1 93105913 93106028 -149558325 - MIR SINE MIR -134 128 8 450 314 57 7 chr1 93106029 93106169 -149558184 - L2 LINE L2 0 3272 3126 28 48 0 0 chr1 93106941 93106983 -149557370 + AT_rich Low_complexity Low_complexity 1 42 0 1737 118 64 44 chr1 93108679 93108976 -149555377 - AluSx SINE Alu -9 303 1 10842 190 34 13 chr1 93109660 93112726 -149551627 + L1MB1 LINE L1 2591 5779 -389 590 221 15 7 chr1 93112733 93112845 -149551508 + FLAM_A SINE Alu 4 119 -192 2234 145 18 2 chr1 93112845 93113239 -149551114 + L1MB1 LINE L1 5769 6168 0 590 221 15 7 chr1 93113239 93113262 -149551091 + FLAM_A SINE Alu 119 140 -171 378 214 0 0 chr1 93113280 93113369 -149550984 + GA-rich Low_complexity Low_complexity 2 90 0 217 346 10 0 chr1 93115082 93115186 -149549167 + (TA)n Simple_repeat Simple_repeat 1 105 0 2277 202 110 8 chr1 93115453 93116096 -149548257 + Charlie5 DNA MER1_type 1 709 -1903 6492 169 115 40 chr1 93116104 93116956 -149547397 + Charlie5 DNA MER1_type 855 1642 -982 2300 107 7 0 chr1 93116956 93117266 -149547087 - AluSx SINE Alu 0 312 1 6492 169 115 40 chr1 93117266 93117847 -149546506 + Charlie5 DNA MER1_type 1642 2429 -195 1261 125 101 0 chr1 93117847 93118055 -149546298 - MER30 DNA MER1_type 0 230 2 6492 169 115 40 chr1 93118055 93118267 -149546086 + Charlie5 DNA MER1_type 2429 2624 0 693 276 55 32 chr1 93118275 93118645 -149545708 - L1ME LINE L1 -515 5647 5257 316 297 79 0 chr1 93119108 93119209 -149545144 + MIR SINE MIR 33 141 -67 209 309 203 41 chr1 93119276 93119399 -149544954 - MIR SINE MIR -79 183 41 552 142 23 28 chr1 93119506 93119622 -149544731 - L1MC4 LINE L1 0 8042 7844 899 182 18 18 chr1 93119808 93119978 -149544375 + MER20 DNA MER1_type 3 172 -47 246 137 59 0 chr1 93120028 93120079 -149544274 - MER3 DNA MER1_type 0 209 156 3325 246 136 20 chr1 93120082 93121409 -149542944 + L1ME1 LINE L1 37 1517 -4879 * 4376 203 65 37 chr1 93121402 93121434 -149542919 + L1ME1 LINE L1 4137 4167 -2068 1813 124 9 103 chr1 93121434 93121799 -149542554 - AluSx SINE Alu 0 312 1 4376 203 65 37 chr1 93121799 93123809 -149540544 + L1ME1 LINE L1 4167 6230 -5 880 193 0 12 chr1 93123815 93123981 -149540372 - MER3 DNA MER1_type -45 164 1 357 24 0 0 chr1 93125738 93125780 -149538573 + (TG)n Simple_repeat Simple_repeat 2 43 0 219 103 0 0 chr1 93128619 93128658 -149535695 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 187 140 40 0 chr1 93128782 93128832 -149535521 + (TG)n Simple_repeat Simple_repeat 1 52 0 507 62 0 0 chr1 93130411 93130503 -149533850 - Alu SINE Alu 0 312 221 549 272 42 84 chr1 93130788 93131053 -149533300 + MIR SINE MIR 4 262 0 189 335 227 15 chr1 93131099 93131349 -149533004 - L2 LINE L2 -662 2652 2456 14374 128 41 4 chr1 93131349 93131399 -149532954 + Tigger1 DNA MER2_type 3 50 -2368 192 40 0 0 chr1 93131399 93131424 -149532929 + (TTG)n Simple_repeat Simple_repeat 2 26 0 14374 128 41 4 chr1 93131424 93133703 -149530650 + Tigger1 DNA MER2_type 50 2418 0 189 335 227 15 chr1 93133703 93134060 -149530293 - L2 LINE L2 -858 2456 1916 1141 236 60 71 chr1 93134074 93134151 -149530202 + MER20B DNA MER1_type 13 89 -694 1801 126 95 26 chr1 93134151 93134500 -149529853 - THE1C LTR MaLR 0 375 3 1141 236 60 71 chr1 93134500 93134929 -149529424 + MER20B DNA MER1_type 89 592 -191 2232 111 3 0 chr1 93134929 93135226 -149529127 - AluSq SINE Alu -13 300 3 1141 236 60 71 chr1 93135226 93135415 -149528938 + MER20B DNA MER1_type 592 782 -1 1154 263 53 54 chr1 93135416 93136103 -149528250 - L2 LINE L2 0 3313 2550 956 233 72 11 chr1 93136115 93136377 -149527976 - L2 LINE L2 -3034 280 3 2271 117 3 0 chr1 93136947 93137256 -149527097 + AluSx SINE Alu 1 310 -2 2653 134 29 10 chr1 93137506 93137924 -149526429 - MSTA LTR MaLR -1 427 2 21 0 0 0 chr1 93137971 93137992 -149526361 + AT_rich Low_complexity Low_complexity 1 21 0 368 319 73 39 chr1 93138060 93138264 -149526089 - L1M4 LINE L1 -3555 2591 2381 2260 185 41 84 chr1 93138471 93139194 -149525159 - MER67B LTR ERV1 0 661 1 1762 242 130 32 chr1 93139193 93139730 -149524623 - MLT1E LTR MaLR -3 590 1 * 26 82 0 0 chr1 93139914 93139975 -149524378 + AT_rich Low_complexity Low_complexity 1 61 0 481 310 115 44 chr1 93140006 93140217 -149524136 - HAL1b LINE L1 -635 713 518 6022 133 23 33 chr1 93140217 93141299 -149523054 - MER11C LTR ERVK 0 1071 1 481 310 115 44 chr1 93141299 93141678 -149522675 - HAL1b LINE L1 -830 518 81 1623 209 74 27 chr1 93142647 93143093 -149521260 + MLT1C LTR MaLR 1 467 0 770 158 0 7 chr1 93143383 93143529 -149520824 + CT-rich Low_complexity Low_complexity 1 145 0 785 276 53 51 chr1 93144359 93144790 -149519563 + L1MEd LINE L1 847 1379 -1111 378 74 0 0 chr1 93144790 93144844 -149519509 + (CA)n Simple_repeat Simple_repeat 2 55 0 785 276 53 51 chr1 93144844 93145047 -149519306 + L1MEd LINE L1 1379 1580 -910 595 268 38 101 chr1 93145054 93145420 -149518933 - MLT1I LTR MaLR -2 407 65 1963 132 0 35 chr1 93145911 93146222 -149518131 + AluSq SINE Alu 2 301 -12 1332 304 52 48 chr1 93146383 93148134 -149516219 + L1MEd LINE L1 2180 3937 -2192 249 300 80 60 chr1 93148297 93148497 -149515856 + L2 LINE L2 2807 3010 -262 274 313 62 31 chr1 93148652 93148812 -149515541 - MIR SINE MIR -31 231 67 193 209 23 0 chr1 93148838 93148881 -149515472 + L2 LINE L2 3186 3229 -43 182 303 30 45 chr1 93148954 93149020 -149515333 + MIR SINE MIR 19 83 -125 2126 103 31 3 chr1 93149721 93150013 -149514340 - AluSq SINE Alu -13 300 1 192 179 0 0 chr1 93150690 93150729 -149513624 + A-rich Low_complexity Low_complexity 2 40 0 317 171 0 29 chr1 93151034 93151104 -149513249 - MLT1K LTR MaLR -17 571 504 369 230 61 0 chr1 93151798 93151894 -149512459 - MER5A DNA MER1_type -16 162 64 3237 182 38 2 chr1 93151895 93151993 -149512360 + L1MC1 LINE L1 1 94 -6332 1672 173 0 7 chr1 93151993 93152271 -149512082 + AluJb SINE Alu 3 278 -34 3237 182 38 2 chr1 93152271 93152749 -149511604 + L1MC1 LINE L1 94 598 -5828 1239 230 12 79 chr1 93152742 93153160 -149511193 + L1MC1 LINE L1 4234 4623 -1803 * 1156 168 10 34 chr1 93153160 93153369 -149510984 - MSTD LTR MaLR 0 396 193 629 202 126 38 chr1 93153388 93153571 -149510782 - MSTD LTR MaLR -158 238 40 6547 167 33 22 chr1 93153598 93155567 -149508786 + L1MC1 LINE L1 4619 6613 0 606 279 6 18 chr1 93155829 93155994 -149508359 - MER69A DNA AcHobo -14 163 1 2803 189 18 4 chr1 93156128 93156731 -149507622 + MER67B LTR ERV1 1 661 0 454 264 8 0 chr1 93156868 93156989 -149507364 + L2 LINE L2 2821 2942 -372 1509 244 61 64 chr1 93157074 93157330 -149507023 + L2 LINE L2 2453 2708 -605 2513 17 3 17 chr1 93157330 93157628 -149506725 + AluY SINE Alu 1 294 -17 1509 244 61 64 chr1 93157628 93157740 -149506613 + L2 LINE L2 2708 2819 -494 1501 126 39 78 chr1 93157740 93158073 -149506280 + MER33 DNA MER1_type 5 324 0 1509 244 61 64 chr1 93158073 93158561 -149505792 + L2 LINE L2 2819 3309 -4 285 210 136 12 chr1 93158579 93158660 -149505693 - MIR SINE MIR -56 152 62 22 0 0 0 chr1 93158972 93158994 -149505359 + AT_rich Low_complexity Low_complexity 1 22 0 300 199 96 163 chr1 93159018 93159184 -149505169 - L2 LINE L2 -1 3271 3117 1588 181 55 12 chr1 93159187 93159512 -149504841 - MLT1D LTR MaLR 0 505 167 41 0 0 0 chr1 93159529 93159570 -149504783 + AT_rich Low_complexity Low_complexity 1 41 0 773 105 8 0 chr1 93159581 93159705 -149504648 - L1MA7 LINE L1 -6 6285 6161 1186 125 54 8 chr1 93159705 93159942 -149504411 - MER7A DNA MER2_type -7 339 1 548 171 0 0 chr1 93159944 93160049 -149504304 - L1MA7 LINE L1 -123 6168 6064 517 125 10 58 chr1 93160049 93160153 -149504200 - MLT1D LTR MaLR -385 120 22 1750 217 105 28 chr1 93160388 93160891 -149503462 - MLT1F LTR MaLR 0 542 1 306 340 109 39 chr1 93160924 93161512 -149502841 - L2 LINE L2 -400 2914 2286 291 343 21 21 chr1 93161681 93161821 -149502532 - MIR SINE MIR -5 257 118 260 283 28 39 chr1 93161822 93161946 -149502407 - MIR SINE MIR -62 146 40 1445 115 55 0 chr1 93161946 93162164 -149502189 - MER30 DNA MER1_type 0 230 1 260 283 28 39 chr1 93162164 93162196 -149502157 - MIR SINE MIR -168 40 9 396 0 0 0 chr1 93162704 93162748 -149501605 + (TA)n Simple_repeat Simple_repeat 1 44 0 1923 99 85 0 chr1 93163350 93163633 -149500720 - AluSx SINE Alu -5 307 1 1850 124 67 0 chr1 93165447 93165729 -149498624 - AluSx SINE Alu -11 301 1 4435 142 71 15 chr1 93165948 93166793 -149497560 - L1MB3 LINE L1 -8 6175 5284 219 323 150 0 chr1 93167471 93167598 -149496755 + MIR SINE MIR 47 192 -70 443 302 27 0 chr1 93168230 93168379 -149495974 + MIR SINE MIR 58 210 -52 793 297 59 30 chr1 93169164 93169568 -149494785 + MLT1K LTR MaLR 11 426 -162 185 139 23 0 chr1 93169593 93169636 -149494717 + GA-rich Low_complexity Low_complexity 2 45 0 421 270 63 9 chr1 93169777 93169888 -149494465 + L2 LINE L2 3150 3266 -6 236 213 0 0 chr1 93171011 93171058 -149493295 - L2 LINE L2 0 3313 3267 200 278 58 13 chr1 93171245 93171334 -149493019 - MER5B DNA MER1_type -77 112 10 1183 241 90 37 chr1 93171513 93172093 -149492260 - MLT1D LTR MaLR 0 505 11 235 207 52 0 chr1 93172136 93172194 -149492159 - Charlie8 DNA MER1_type -1006 1411 1351 773 236 49 20 chr1 93172217 93172420 -149491933 - Charlie8 DNA MER1_type -2208 209 1 593 330 119 40 chr1 93172655 93172764 -149491589 + L2 LINE L2 2558 2657 -615 1581 176 33 36 chr1 93172764 93173127 -149491226 - MLT1A1 LTR MaLR 0 365 4 593 330 119 40 chr1 93173127 93173684 -149490669 + L2 LINE L2 2657 3272 0 525 318 91 14 chr1 93174529 93174749 -149489604 - MIR SINE MIR -3 259 23 229 227 23 0 chr1 93175474 93175518 -149488835 + L2 LINE L2 3208 3252 -20 1408 212 56 117 chr1 93176369 93176748 -149487605 - MLT1D LTR MaLR -16 489 157 1730 134 24 3 chr1 93176748 93177039 -149487314 + L1PA16 LINE L1 5861 6157 -9 1408 212 56 117 chr1 93177039 93177182 -149487171 - MLT1D LTR MaLR -348 157 7 1290 220 14 0 chr1 93177273 93177559 -149486794 + L1M2 LINE L1 2296 2585 -4264 23 0 0 0 chr1 93177601 93177624 -149486729 + AT_rich Low_complexity Low_complexity 1 23 0 434 296 82 15 chr1 93177982 93178178 -149486175 - L1MEd LINE L1 -5016 1103 895 753 310 107 61 chr1 93178273 93178976 -149485377 - L1MEd LINE L1 -5359 760 26 495 240 159 29 chr1 93179319 93179393 -149484960 - MIR SINE MIR -20 242 179 192 40 0 0 chr1 93179393 93179418 -149484935 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1590 103 5 0 chr1 93179421 93179634 -149484719 - AluSq SINE Alu -17 296 83 495 240 159 29 chr1 93179634 93179763 -149484590 - MIR SINE MIR -84 178 8 695 287 44 49 chr1 93179856 93180332 -149484021 - L1ME3A LINE L1 -286 5884 5424 1392 225 51 109 chr1 93180362 93180988 -149483365 - MLT1G LTR MaLR 0 590 1 32 0 0 0 chr1 93181477 93181509 -149482844 + AT_rich Low_complexity Low_complexity 1 32 0 475 262 63 59 chr1 93181688 93181925 -149482428 + MLT1K LTR MaLR 224 461 -127 2240 125 0 6 chr1 93182834 93183147 -149481206 + AluSx SINE Alu 1 311 -1 2135 110 0 7 chr1 93184088 93184380 -149479973 - AluSc SINE Alu -19 290 1 1460 246 163 32 chr1 93184461 93185270 -149479083 - HAL1b LINE L1 -263 1085 171 336 196 29 29 chr1 93185901 93186003 -149478350 - LTR33A LTR ERVL -13 510 409 6065 138 26 9 chr1 93186072 93186617 -149477736 + L1PB1 LINE L1 4766 5300 -851 2199 106 0 3 chr1 93186617 93186924 -149477429 + AluSx SINE Alu 1 306 0 6065 138 26 9 chr1 93186924 93187745 -149476608 + L1PB1 LINE L1 5300 6150 -1 23 0 0 0 chr1 93187745 93187768 -149476585 + AT_rich Low_complexity Low_complexity 1 23 0 1580 202 15 35 chr1 93187770 93188166 -149476187 + MLT1D LTR MaLR 118 505 0 1762 189 53 13 chr1 93188650 93189025 -149475328 - MLT1B LTR MaLR 0 390 1 186 214 0 24 chr1 93189993 93190035 -149474318 - MIR SINE MIR -50 212 172 359 311 216 7 chr1 93190370 93190518 -149473835 - MIR3 SINE MIR -11 197 19 40796 32 25 1 chr1 93193375 93199385 -149464968 + L1PA3 LINE L1 2 6155 0 250 298 137 46 chr1 93199847 93199978 -149464375 - MIR SINE MIR -71 191 49 245 260 83 30 chr1 93199997 93200166 -149464187 - Charlie7 DNA MER1_type 0 2612 2435 355 256 126 11 chr1 93201137 93201328 -149463025 + L1M4 LINE L1 3615 3827 -2319 250 103 0 0 chr1 93201472 93201511 -149462842 - U3 snRNA snRNA -178 39 1 372 312 122 40 chr1 93201513 93201965 -149462388 + L1M4 LINE L1 4057 4545 -1601 14325 180 34 29 chr1 93202333 93204647 -149459706 + L1MA4A LINE L1 21 2323 -5042 2464 81 0 3 chr1 93204647 93204955 -149459398 + AluY SINE Alu 1 307 -4 14325 180 34 29 chr1 93204955 93208809 -149455544 + L1MA4A LINE L1 2323 6169 -1196 2151 101 47 10 chr1 93208809 93209107 -149455246 + AluSq SINE Alu 5 313 0 14325 180 34 29 chr1 93209107 93210304 -149454049 + L1MA4A LINE L1 6169 7359 -6 1714 162 14 10 chr1 93210506 93210803 -149453550 - AluJb SINE Alu -14 298 1 379 323 0 16 chr1 93211185 93211309 -149453044 - MIR SINE MIR -121 141 20 481 314 37 1 chr1 93211486 93211642 -149452711 + MIR SINE MIR 30 188 -55 22 56 0 0 chr1 93211699 93211735 -149452618 + AT_rich Low_complexity Low_complexity 1 36 0 1825 174 0 16 chr1 93211954 93212264 -149452089 - AluJb SINE Alu -7 305 1 379 311 15 45 chr1 93212942 93213074 -149451279 + L2 LINE L2 3141 3268 -4 2061 139 0 7 chr1 93213521 93213823 -149450530 + AluSx SINE Alu 1 300 -12 231 290 58 0 chr1 93215387 93215456 -149448897 + L2 LINE L2 3123 3195 -77 726 193 7 15 chr1 93215489 93215624 -149448729 - L2 LINE L2 -1 3312 3179 331 281 20 75 chr1 93215639 93215785 -149448568 - MIR SINE MIR -111 151 14 377 250 131 48 chr1 93215973 93216141 -149448212 + MER5A DNA MER1_type 7 188 -1 584 292 87 32 chr1 93216470 93216689 -149447664 - MIR SINE MIR -24 238 8 297 0 0 0 chr1 93217156 93217189 -149447164 + (TG)n Simple_repeat Simple_repeat 1 33 0 310 317 144 0 chr1 93217692 93217859 -149446494 - MIR3 SINE MIR -7 201 11 430 222 93 0 chr1 93218304 93218412 -149445941 + L2 LINE L2 3196 3313 0 407 150 0 237 chr1 93218416 93218589 -149445764 - L2 LINE L2 -8 3305 3174 1163 273 94 25 chr1 93218644 93219165 -149445188 - L2 LINE L2 -522 2792 2142 227 391 102 0 chr1 93219251 93219379 -149444974 + MIR3 SINE MIR 54 194 -14 435 270 109 29 chr1 93219401 93219575 -149444778 + MIR SINE MIR 41 228 -34 1905 139 0 0 chr1 93220178 93220452 -149443901 + AluSx SINE Alu 29 302 -10 22 35 0 0 chr1 93220716 93220745 -149443608 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 93220955 93220977 -149443376 + AT_rich Low_complexity Low_complexity 1 22 0 2747 171 54 35 chr1 93221405 93221956 -149442397 + MER68 LTR ERV1 1 562 0 350 330 142 52 chr1 93225679 93226009 -149438344 + L3b LINE CR1 1216 1575 -8 1334 236 126 37 chr1 93226909 93227498 -149436855 + L1ME4a LINE L1 5285 5925 -196 6131 93 7 26 chr1 93227502 93228176 -149436177 + L1PA14 LINE L1 4821 5507 -654 1910 140 0 4 chr1 93228176 93228455 -149435898 + AluSx SINE Alu 5 282 -30 276 30 0 0 chr1 93228459 93228492 -149435861 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 6131 93 7 26 chr1 93228492 93229170 -149435183 + L1PA14 LINE L1 5510 6160 -1 225 83 0 42 chr1 93229178 93229226 -149435127 + LTR66 LTR ERVL 394 439 -171 244 302 23 0 chr1 93229226 93229312 -149435041 - L1MC4 LINE L1 -1341 6701 6614 * 277 276 23 0 chr1 93229240 93229327 -149435026 + L1MC4 LINE L1 6614 6702 -1340 228 135 0 19 chr1 93229362 93229414 -149434939 - LTR66 LTR ERVL -175 435 385 238 170 0 19 chr1 93229439 93229492 -149434861 - L1MC4 LINE L1 -1339 6703 6652 * 335 264 72 18 chr1 93229453 93229620 -149434733 + L1ME4a LINE L1 5935 6110 -11 787 221 119 17 chr1 93231101 93231336 -149433017 + MIR SINE MIR 2 260 -2 2330 94 0 0 chr1 93232388 93232687 -149431666 - AluSx SINE Alu -13 299 1 222 143 0 0 chr1 93232991 93233026 -149431327 + L2 LINE L2 3238 3272 0 1317 151 68 65 chr1 93233386 93233678 -149430675 - AluJb SINE Alu -9 293 1 2507 162 20 9 chr1 93234485 93234941 -149429412 + MER65C LTR ERV1 1 461 0 294 135 0 58 chr1 93235465 93235517 -149428836 + LTR57-int LTR ERVL 303 351 -4992 638 281 162 20 chr1 93235788 93236090 -149428263 + MER34 LTR ERV1 34 378 -164 976 207 96 43 chr1 93236090 93236413 -149427940 + MER65C-int LTR ERV1 1568 1907 -2964 583 226 53 109 chr1 93236413 93236467 -149427886 + LTR57-int LTR ERVL 700 1055 -4288 2550 130 3 3 chr1 93236467 93236858 -149427495 - L1PA16 LINE L1 -2 6164 5774 2951 185 26 14 chr1 93236860 93237573 -149426780 + L1PA15-16 LINE L1 2422 3150 -3699 1842 225 36 10 chr1 93237573 93238070 -149426283 + MER65C-int LTR ERV1 1978 2487 -2384 271 265 12 0 chr1 93238187 93238270 -149426083 + MER65C-int LTR ERV1 3766 3849 -3356 405 299 40 11 chr1 93238320 93238526 -149425827 + MER65C-int LTR ERV1 2372 4188 -2546 2065 191 83 118 chr1 93238798 93240374 -149423979 + MER65C-int LTR ERV1 2805 4978 -1353 276 159 0 0 chr1 93240420 93240464 -149423889 + MER65C-int LTR ERV1 5653 5696 -2424 2145 237 53 41 chr1 93240548 93241110 -149423243 + MER65C-int LTR ERV1 3605 4173 -698 861 301 57 35 chr1 93241196 93241688 -149422665 + MER65C-int LTR ERV1 4369 4871 0 2625 134 22 26 chr1 93241688 93241799 -149422554 + MER65C LTR ERV1 1 111 -350 2035 139 0 0 chr1 93241799 93242109 -149422244 + AluSx SINE Alu 1 310 -2 2625 134 22 26 chr1 93242109 93242460 -149421893 + MER65C LTR ERV1 111 461 0 26 74 0 0 chr1 93242806 93242860 -149421493 + AT_rich Low_complexity Low_complexity 1 54 0 31 26 0 0 chr1 93242940 93242978 -149421375 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 93243260 93243284 -149421069 + AT_rich Low_complexity Low_complexity 1 24 0 21 104 0 0 chr1 93243529 93243606 -149420747 + AT_rich Low_complexity Low_complexity 1 77 0 358 22 0 0 chr1 93244425 93244471 -149419882 + MADE1 DNA Mariner 1 46 -34 27 73 0 0 chr1 93244827 93244882 -149419471 + AT_rich Low_complexity Low_complexity 1 55 0 340 301 75 15 chr1 93245271 93245404 -149418949 + MIR3 SINE MIR 14 154 -54 1917 161 27 6 chr1 93245477 93245813 -149418540 + MER2 DNA MER2_type 2 344 0 35 41 0 0 chr1 93245840 93245889 -149418464 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr1 93247251 93247273 -149417080 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 93247324 93247347 -149417006 + AT_rich Low_complexity Low_complexity 1 23 0 2792 139 28 20 chr1 93247737 93248103 -149416250 - L1PB1 LINE L1 0 6151 5778 447 19 0 0 chr1 93248103 93248155 -149416198 + (TA)n Simple_repeat Simple_repeat 2 53 0 2792 139 28 20 chr1 93248155 93248284 -149416069 - L1PB1 LINE L1 -373 5778 5652 1843 47 4 0 chr1 93248299 93248531 -149415822 + L1PA7 LINE L1 5911 6143 -11 21 36 0 0 chr1 93248766 93248794 -149415559 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 93248817 93248852 -149415501 + AT_rich Low_complexity Low_complexity 1 35 0 1727 199 0 3 chr1 93250568 93250880 -149413473 - AluJo SINE Alu -1 311 1 22 35 0 0 chr1 93251043 93251072 -149413281 + AT_rich Low_complexity Low_complexity 1 29 0 250 291 0 4 chr1 93252213 93252285 -149412068 + MIR SINE MIR 28 98 -110 22 70 0 0 chr1 93253227 93253270 -149411083 + AT_rich Low_complexity Low_complexity 1 43 0 316 341 111 66 chr1 93253773 93254213 -149410140 - L2 LINE L2 -9 3263 2804 253 275 0 0 chr1 93256223 93256292 -149408061 - L1ME LINE L1 -653 5500 5432 764 305 72 18 chr1 93256339 93256739 -149407614 - L1ME LINE L1 -1678 4451 4030 467 239 199 73 chr1 93257097 93257478 -149406875 - L1ME LINE L1 -3084 3045 2617 1204 264 53 108 chr1 93257676 93258417 -149405936 - L1ME LINE L1 -5403 716 17 338 318 65 68 chr1 93258477 93258801 -149405552 - HAL1 LINE L1 -1064 1443 1121 249 323 77 26 chr1 93260638 93260793 -149403560 - L2 LINE L2 -2 3311 3149 517 364 132 24 chr1 93260924 93261430 -149402923 - L2 LINE L2 -409 2905 2345 27 73 0 0 chr1 93262885 93262940 -149401413 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr1 93263271 93263295 -149401058 + AT_rich Low_complexity Low_complexity 1 24 0 411 291 83 22 chr1 93264541 93264803 -149399550 + L1ME LINE L1 49 1000 -5947 232 327 160 7 chr1 93265109 93265259 -149399094 + L1ME LINE L1 1029 1201 -5654 7575 255 76 22 chr1 93265315 93270005 -149394348 + L1MB8 LINE L1 1188 6337 -652 1505 135 150 0 chr1 93270005 93270265 -149394088 + AluSx SINE Alu 4 302 0 7575 255 76 22 chr1 93270265 93270940 -149393413 + L1MB8 LINE L1 6337 6974 -15 579 301 65 80 chr1 93271388 93271724 -149392629 - MER102b DNA MER1_type -10 331 1 1623 171 3 24 chr1 93272059 93272346 -149392007 + AluJo SINE Alu 15 295 -17 5125 193 67 11 chr1 93272763 93273278 -149391075 - L1 LINE L1 -1446 4700 4215 180 0 0 0 chr1 93273278 93273298 -149391055 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 5125 193 67 11 chr1 93273298 93273962 -149390391 - L1 LINE L1 -1931 4215 3455 4551 192 48 43 chr1 93273961 93274893 -149389460 + L1MA9 LINE L1 5144 6084 -228 * 14716 121 40 5 chr1 93274893 93277229 -149387124 + Tigger1 DNA MER2_type 1 2417 -1 4551 192 48 43 chr1 93277229 93277454 -149386899 + L1MA9 LINE L1 6084 6306 -6 2308 146 35 22 chr1 93277555 93277958 -149386395 - MSTB LTR MaLR -5 421 14 26 0 0 0 chr1 93278012 93278038 -149386315 + AT_rich Low_complexity Low_complexity 1 26 0 1913 119 0 44 chr1 93278085 93278408 -149385945 - AluSx SINE Alu 0 310 1 25 0 0 0 chr1 93278488 93278513 -149385840 + AT_rich Low_complexity Low_complexity 1 25 0 542 213 128 5 chr1 93278559 93278747 -149385606 + L1ME4a LINE L1 5591 5801 -320 1869 163 0 3 chr1 93278830 93279124 -149385229 + AluJb SINE Alu 1 293 -19 318 240 116 0 chr1 93279145 93279274 -149385079 + L1ME4a LINE L1 5954 6097 -24 599 200 168 7 chr1 93279310 93279465 -149384888 - MER5A DNA MER1_type -1 188 9 181 310 84 14 chr1 93279878 93279949 -149384404 - L2 LINE L2 -60 3212 3137 214 204 21 32 chr1 93279978 93280071 -149384282 + (TATAA)n Simple_repeat Simple_repeat 4 95 0 21 36 0 0 chr1 93283268 93283296 -149381057 + AT_rich Low_complexity Low_complexity 1 28 0 1889 125 3 20 chr1 93284932 93285227 -149379126 - AluSx SINE Alu -22 290 1 204 125 0 0 chr1 93285375 93285407 -149378946 + (GGGAA)n Simple_repeat Simple_repeat 5 36 0 210 321 38 0 chr1 93285893 93285946 -149378407 + L2 LINE L2 3205 3259 -13 289 239 14 14 chr1 93286039 93286110 -149378243 + L2 LINE L2 2992 3062 -210 258 160 181 75 chr1 93287444 93287538 -149376815 - MIR SINE MIR -78 184 81 690 189 51 25 chr1 93287941 93288137 -149376216 - L1MC3 LINE L1 -1834 5951 5751 * 4863 237 55 29 chr1 93288119 93288310 -149376043 - L1MC3 LINE L1 -1249 4897 4713 2234 109 0 7 chr1 93288310 93288614 -149375739 - AluY SINE Alu -9 302 1 4863 237 55 29 chr1 93288614 93288943 -149375410 - L1MC3 LINE L1 -1433 4713 4394 457 139 13 0 chr1 93288943 93289022 -149375331 + MADE1 DNA Mariner 1 80 0 4863 237 55 29 chr1 93289022 93290045 -149374308 - L1MC3 LINE L1 -1752 4394 3312 * 7544 165 75 37 chr1 93290042 93291194 -149373159 - L1MC3 LINE L1 -814 6971 5865 1955 158 24 19 chr1 93291194 93291567 -149372786 - THE1C LTR MaLR 0 375 1 7544 165 75 37 chr1 93291567 93291867 -149372486 - L1MC3 LINE L1 -1920 5865 5578 264 30 0 0 chr1 93291867 93291900 -149372453 + (TG)n Simple_repeat Simple_repeat 1 33 0 7544 165 75 37 chr1 93291900 93292091 -149372262 - L1MC3 LINE L1 -2207 5578 5264 3783 242 52 27 chr1 93292077 93293386 -149370967 - L1MCb LINE L1 -2588 3976 2635 * 343 208 52 10 chr1 93293403 93293499 -149370854 + L1MCa LINE L1 1902 2001 -4425 1229 212 96 0 chr1 93293589 93293983 -149370370 - L1MCb LINE L1 -3939 2625 2195 2226 210 80 65 chr1 93293992 93294726 -149369627 + LTR1B LTR ERV1 1 745 -81 231 276 0 0 chr1 93294747 93294805 -149369548 + (CAAAG)n Simple_repeat Simple_repeat 4 61 0 3905 227 38 28 chr1 93294894 93296858 -149367495 - L1MCb LINE L1 -4431 2133 1 775 240 121 60 chr1 93296873 93297033 -149367320 - L1MDa LINE L1 -4051 2489 2340 1897 109 49 3 chr1 93297033 93297317 -149367036 - AluSp SINE Alu -16 297 1 775 240 121 60 chr1 93297317 93297668 -149366685 - L1MDa LINE L1 -4200 2340 1947 621 238 98 52 chr1 93297656 93298022 -149366331 - L1MDa LINE L1 -4825 1715 1333 * 2248 75 34 0 chr1 93298172 93298465 -149365888 - AluY SINE Alu 0 311 9 478 316 7 70 chr1 93298466 93298767 -149365586 - L1MDa LINE L1 -6258 282 1 854 201 60 15 chr1 93299386 93299585 -149364768 - MER3 DNA MER1_type -1 208 1 23 54 0 0 chr1 93299782 93299819 -149364534 + AT_rich Low_complexity Low_complexity 1 37 0 1658 108 0 0 chr1 93300172 93300394 -149363959 + AluSq SINE Alu 90 311 -2 877 294 55 39 chr1 93301413 93301678 -149362675 - L2 LINE L2 -653 2661 2387 2145 185 95 90 chr1 93301678 93302499 -149361854 + LTR1B LTR ERV1 1 825 -1 877 294 55 39 chr1 93302499 93302617 -149361736 - L2 LINE L2 -927 2387 2272 1630 251 141 16 chr1 93302830 93303385 -149360968 + MLT1E2 LTR MaLR 3 626 0 208 313 16 0 chr1 93304235 93304299 -149360054 + L2 LINE L2 3208 3272 0 447 234 110 48 chr1 93304589 93304734 -149359619 - MIR SINE MIR -25 237 84 185 329 13 51 chr1 93305939 93306018 -149358335 + L2 LINE L2 3230 3305 -8 1444 228 0 0 chr1 93306620 93306888 -149357465 + MER69 DNA AcHobo 6 273 -2253 1086 205 94 92 chr1 93306892 93307457 -149356896 + MER69 DNA AcHobo 1458 2023 -503 259 182 0 0 chr1 93307557 93307601 -149356752 + MER69 DNA AcHobo 1997 2040 -486 1103 232 90 31 chr1 93307690 93308103 -149356250 - HsTC2 DNA Tc2 0 1900 1288 379 302 108 22 chr1 93308096 93308235 -149356118 - HsTC2 DNA Tc2 -1747 151 1 * 509 267 28 28 chr1 93309403 93309583 -149354770 + MLT1K LTR MaLR 392 571 -17 303 185 9 102 chr1 93309982 93310090 -149354263 - L1ME4a LINE L1 -86 6035 5938 1708 304 2 0 chr1 93310135 93310579 -149353774 + L1M2 LINE L1 12 456 -6393 9172 169 37 11 chr1 93310580 93312603 -149351750 + L1MA4A LINE L1 2998 5183 -1120 2224 117 3 13 chr1 93312603 93312919 -149351434 - AluSp SINE Alu 0 313 1 9172 169 37 11 chr1 93312919 93314047 -149350306 + L1MA4A LINE L1 5183 6280 -23 240 230 75 10 chr1 93314278 93314382 -149349971 - L1ME4a LINE L1 -383 5787 5678 2333 227 79 9 chr1 93314511 93315146 -149349207 - L1MB7 LINE L1 -9 6175 5497 491 298 121 17 chr1 93315152 93315592 -149348761 - L1ME4a LINE L1 -475 5695 5211 316 270 124 44 chr1 93315816 93315953 -149348400 - LTR67 LTR ERVL 0 557 410 2254 118 0 13 chr1 93315983 93316297 -149348056 + AluSx SINE Alu 1 310 -2 388 196 11 11 chr1 93316689 93316781 -149347572 - L1MC4 LINE L1 -387 7655 7564 634 45 56 0 chr1 93316785 93316874 -149347479 - L1PA13 LINE L1 -1 6162 6069 207 167 0 0 chr1 93318121 93318163 -149346190 + (TA)n Simple_repeat Simple_repeat 1 42 0 805 189 90 47 chr1 93318173 93318406 -149345947 + MER2 DNA MER2_type 103 345 0 213 231 0 0 chr1 93318436 93318475 -149345878 + (CATA)n Simple_repeat Simple_repeat 4 42 0 22 35 0 0 chr1 93318573 93318602 -149345751 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 93318784 93318812 -149345541 + AT_rich Low_complexity Low_complexity 1 28 0 266 208 31 52 chr1 93318988 93319084 -149345269 + L1MC/D LINE L1 5723 5816 -1992 * 1638 241 88 29 chr1 93319081 93319607 -149344746 + L1ME4a LINE L1 5440 5996 -174 709 249 131 18 chr1 93319759 93319988 -149344365 + MIR SINE MIR 7 261 -1 5234 119 31 29 chr1 93320023 93321328 -149343025 - L1PA14 LINE L1 -5 6156 4846 750 134 8 15 chr1 93321371 93321505 -149342848 - L1PA15 LINE L1 -9 6156 6024 3829 181 11 1 chr1 93321561 93322294 -149342059 - L1PA14 LINE L1 -1302 4844 4105 1198 147 37 0 chr1 93322327 93322518 -149341835 + MER2 DNA MER2_type 1 198 -147 238 323 0 15 chr1 93322556 93322621 -149341732 + MER2 DNA MER2_type 280 343 -2 1963 137 0 7 chr1 93322642 93322977 -149341376 + AluSx SINE Alu 1 333 0 225 246 0 0 chr1 93322977 93323038 -149341315 + L1ME4a LINE L1 5996 6056 -65 205 287 13 71 chr1 93324581 93324684 -149339669 - MIR SINE MIR -73 135 54 230 204 20 0 chr1 93326508 93326557 -149337796 + MER116 DNA Mariner 1 50 -30 290 285 44 15 chr1 93326933 93327070 -149337283 - L2 LINE L2 -77 3236 3096 475 151 0 0 chr1 93327084 93327157 -149337196 - AluY SINE Alu -25 286 214 1022 143 7 0 chr1 93327158 93327305 -149337048 - AluSx SINE Alu -131 181 34 2097 256 134 15 chr1 93327307 93327645 -149336708 - L2 LINE L2 -239 3074 2778 1567 182 19 29 chr1 93327645 93327952 -149336401 + AluJb SINE Alu 6 309 -3 2097 256 134 15 chr1 93327952 93328554 -149335799 - L2 LINE L2 -535 2778 1999 2287 118 0 0 chr1 93328997 93329302 -149335051 + AluSx SINE Alu 3 307 -5 774 221 14 0 chr1 93329372 93329560 -149334793 + FRAM SINE Alu 1 55 0 382 293 164 5 chr1 93329942 93330134 -149334219 + MIR SINE MIR 37 257 -5 2450 188 29 2 chr1 93330966 93331476 -149332877 + L1MA9 LINE L1 4785 5308 -838 725 194 73 55 chr1 93331477 93331566 -149332787 + Tigger7 DNA MER2_type 2 97 -2390 2247 107 0 0 chr1 93331566 93331856 -149332497 - AluSg SINE Alu -20 290 1 725 194 73 55 chr1 93331856 93331931 -149332422 + Tigger7 DNA MER2_type 97 169 -2318 496 204 0 0 chr1 93331967 93332055 -149332298 + Tigger7 DNA MER2_type 2396 2483 -4 3212 162 21 28 chr1 93332058 93332815 -149331538 + L1MA9 LINE L1 5306 6031 -271 1746 192 23 54 chr1 93332811 93333101 -149331252 + L1MA9 LINE L1 5849 6122 -190 * 2154 117 3 3 chr1 93333101 93333408 -149330945 - AluSg SINE Alu -3 307 1 1746 192 23 54 chr1 93333408 93333559 -149330794 + L1MA9 LINE L1 6122 6276 -36 1453 138 5 5 chr1 93333593 93333817 -149330536 + AluSg/x SINE Alu 86 309 -1 253 338 166 0 chr1 93333880 93334031 -149330322 - L2 LINE L2 -921 2393 2218 815 137 137 0 chr1 93334527 93334666 -149329687 + MER20 DNA MER1_type 1 158 -61 345 292 77 36 chr1 93334911 93335131 -149329222 - L1MC/D LINE L1 -546 5813 5582 2290 99 0 6 chr1 93335866 93336179 -149328174 - AluSx SINE Alu -1 311 1 587 271 51 59 chr1 93336486 93336574 -149327779 - L2 LINE L2 -2 3311 3224 192 77 0 0 chr1 93336574 93336600 -149327753 + (CA)n Simple_repeat Simple_repeat 1 26 0 587 271 51 59 chr1 93336600 93336766 -149327587 - L2 LINE L2 -89 3224 3059 1199 212 277 9 chr1 93336795 93337253 -149327100 - L1MC4 LINE L1 -2 8040 7460 264 156 22 0 chr1 93337253 93337298 -149327055 - MER46B DNA MER2_type 0 236 191 1383 152 53 15 chr1 93337321 93337585 -149326768 - AluSg SINE Alu -36 274 1 1630 122 67 61 chr1 93337585 93337723 -149326630 - MER46B DNA MER2_type -2526 205 187 1916 128 24 3 chr1 93337723 93338011 -149326342 - AluSx SINE Alu -17 295 2 1630 122 67 61 chr1 93338011 93338200 -149326153 - MER46B DNA MER2_type -2544 187 1 808 159 28 34 chr1 93338213 93338389 -149325964 - L1MC4a LINE L1 -440 7368 7194 547 194 136 0 chr1 93338391 93338567 -149325786 - L1MC/D LINE L1 -650 5516 5308 2111 252 59 68 chr1 93338571 93338919 -149325434 - L2 LINE L2 -243 3070 2720 2576 55 0 3 chr1 93338919 93339226 -149325127 + AluY SINE Alu 1 306 -5 2111 252 59 68 chr1 93339226 93339741 -149324612 - L2 LINE L2 -593 2720 2210 519 275 158 30 chr1 93339769 93340311 -149324042 - L1ME LINE L1 -520 5644 5036 316 296 117 62 chr1 93340563 93340803 -149323550 - L1ME LINE L1 -1253 4893 4641 503 263 133 53 chr1 93340839 93341439 -149322914 - L1ME LINE L1 -1621 4525 3878 273 226 120 19 chr1 93341513 93341721 -149322632 - L1ME LINE L1 -2824 3322 3094 238 319 0 0 chr1 93341748 93341839 -149322514 - L1ME LINE L1 -3113 3033 2943 228 201 16 8 chr1 93341871 93341952 -149322401 + T-rich Low_complexity Low_complexity 1 81 0 1128 159 4 69 chr1 93342522 93342755 -149321598 - MER20 DNA MER1_type -1 218 1 282 333 99 75 chr1 93343250 93343634 -149320719 - L2 LINE L2 -8 3264 2872 24 32 0 0 chr1 93343914 93343945 -149320408 + AT_rich Low_complexity Low_complexity 1 31 0 1985 147 7 0 chr1 93344492 93344785 -149319568 + AluSx SINE Alu 1 295 -17 203 279 67 10 chr1 93344849 93344953 -149319400 + L3 LINE CR1 1174 1283 -294 463 286 108 42 chr1 93345047 93345260 -149319093 + MIR SINE MIR 29 255 -7 374 261 94 14 chr1 93345334 93345472 -149318881 - MER20B DNA MER1_type -592 191 43 253 326 57 14 chr1 93345553 93345694 -149318659 + MIR SINE MIR 90 236 -26 195 306 0 42 chr1 93345748 93345820 -149318533 + L3 LINE CR1 1473 1541 -36 180 0 0 0 chr1 93345946 93345966 -149318387 + (A)n Simple_repeat Simple_repeat 1 20 0 1516 137 126 0 chr1 93345971 93346226 -149318127 + AluJb SINE Alu 21 307 -5 1169 68 55 0 chr1 93349035 93349198 -149315155 + L1PA11 LINE L1 5999 6170 -4 521 218 147 41 chr1 93349252 93349422 -149314931 + MER5A DNA MER1_type 2 189 0 2103 113 7 3 chr1 93349474 93349783 -149314570 - AluY SINE Alu -1 310 1 374 249 207 5 chr1 93351474 93351667 -149312686 + L1MC/D LINE L1 5569 5800 -2008 1614 96 104 0 chr1 93352447 93352677 -149311676 + AluSx SINE Alu 1 254 -58 389 250 11 0 chr1 93352736 93352828 -149311525 + MER5A DNA MER1_type 14 106 -83 2467 60 10 0 chr1 93354745 93355044 -149309309 - AluSc SINE Alu -7 302 1 383 274 193 59 chr1 93356308 93356614 -149307739 - L2 LINE L2 -17 3255 2909 232 180 140 0 chr1 93356655 93356705 -149307648 - MER94 DNA DNA -47 87 31 203 179 26 64 chr1 93358538 93358616 -149305737 + (CCCG)n Simple_repeat Simple_repeat 2 76 0 1828 124 21 41 chr1 93358754 93359044 -149305309 + AluSg SINE Alu 3 286 -24 223 47 0 47 chr1 93359044 93359087 -149305266 + (TA)n Simple_repeat Simple_repeat 2 42 0 23 33 0 0 chr1 93359649 93359679 -149304674 + AT_rich Low_complexity Low_complexity 1 30 0 402 300 36 50 chr1 93359848 93359988 -149304365 - L2 LINE L2 -18 3254 3117 1644 135 18 18 chr1 93359999 93360273 -149304080 + AluSx SINE Alu 7 280 -32 23 33 0 0 chr1 93360634 93360664 -149303689 + AT_rich Low_complexity Low_complexity 1 30 0 402 300 36 50 chr1 93360833 93360973 -149303380 - L2 LINE L2 -18 3254 3117 2125 112 3 16 chr1 93360984 93361287 -149303066 + AluSx SINE Alu 7 305 -7 294 322 48 20 chr1 93362010 93362161 -149302192 + MIR SINE MIR 28 188 -63 1071 318 120 12 chr1 93362178 93362915 -149301438 - L2 LINE L2 -15 3298 2476 264 217 61 0 chr1 93363185 93363374 -149300979 + (TA)n Simple_repeat Simple_repeat 1 200 0 246 62 0 0 chr1 93363552 93363584 -149300769 + (T)n Simple_repeat Simple_repeat 1 32 0 34 24 0 0 chr1 93364590 93364631 -149299722 + AT_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chr1 93364870 93364913 -149299440 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 93366109 93366130 -149298223 + AT_rich Low_complexity Low_complexity 1 21 0 187 28 56 28 chr1 93366164 93366200 -149298153 + (TAAAAA)n Simple_repeat Simple_repeat 6 42 0 1126 159 14 14 chr1 93366209 93366417 -149297936 + MER3 DNA MER1_type 2 209 0 495 230 209 0 chr1 93367054 93367202 -149297151 - MER5A DNA MER1_type -1 188 10 * 701 257 55 37 chr1 93367201 93367419 -149296934 + MIR SINE MIR 20 241 -21 24 53 0 0 chr1 93367933 93367971 -149296382 + AT_rich Low_complexity Low_complexity 1 38 0 46 45 0 0 chr1 93368160 93368227 -149296126 + AT_rich Low_complexity Low_complexity 1 67 0 22 35 0 0 chr1 93368418 93368447 -149295906 + AT_rich Low_complexity Low_complexity 1 29 0 840 137 0 0 chr1 93368812 93368936 -149295417 + FLAM_C SINE Alu 15 138 -5 384 127 0 0 chr1 93370206 93370261 -149294092 + Tigger5 DNA MER2_type 1 55 -2268 272 232 116 0 chr1 93370281 93370350 -149294003 + Tigger5 DNA MER2_type 2247 2323 0 475 264 22 88 chr1 93370472 93370654 -149293699 + MER5B DNA MER1_type 1 170 -8 2369 83 0 7 chr1 93371234 93371535 -149292818 + AluSc SINE Alu 1 299 -10 2386 109 0 0 chr1 93372057 93372370 -149291983 + AluSq SINE Alu 1 313 0 2326 87 0 10 chr1 93372378 93372687 -149291666 + AluY SINE Alu 1 306 -5 1521 142 71 3 chr1 93372783 93373092 -149291261 + L1MA8 LINE L1 5949 6278 -13 2690 7 0 7 chr1 93373098 93373395 -149290958 - AluYa5 SINE Alu -16 295 1 24 0 0 0 chr1 93373397 93373421 -149290932 + AT_rich Low_complexity Low_complexity 1 24 0 2062 149 0 0 chr1 93373423 93373719 -149290634 + AluJo SINE Alu 1 296 -16 9385 150 88 60 chr1 93373847 93374143 -149290210 + Tigger1 DNA MER2_type 1 287 -2131 1963 154 0 3 chr1 93374143 93374436 -149289917 + AluSx SINE Alu 1 292 -20 9385 150 88 60 chr1 93374436 93374607 -149289746 + Tigger1 DNA MER2_type 287 452 -1966 2044 139 3 0 chr1 93374607 93374917 -149289436 + AluSx SINE Alu 1 311 -1 9385 150 88 60 chr1 93374917 93376799 -149287554 + Tigger1 DNA MER2_type 452 2418 0 358 236 49 8 chr1 93376900 93377023 -149287330 + MER103 DNA DNA 38 165 -1 26 0 0 0 chr1 93377560 93377586 -149286767 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr1 93378277 93378306 -149286047 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 93378480 93378509 -149285844 + AT_rich Low_complexity Low_complexity 1 29 0 410 191 43 11 chr1 93379345 93379439 -149284914 - FLAM_A SINE Alu -19 123 27 1529 182 51 27 chr1 93379559 93379855 -149284498 + AluJo SINE Alu 1 303 -9 1070 119 77 12 chr1 93379856 93380024 -149284329 + AluJb SINE Alu 133 311 -1 210 322 224 21 chr1 93380307 93380450 -149283903 + MIR SINE MIR 20 191 -71 37 23 0 0 chr1 93380572 93380616 -149283737 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr1 93380866 93380892 -149283461 + AT_rich Low_complexity Low_complexity 1 26 0 2056 106 17 20 chr1 93381432 93381725 -149282628 - AluSx SINE Alu -20 292 1 305 318 82 35 chr1 93382256 93382426 -149281927 + MIR3 SINE MIR 31 208 0 185 386 45 25 chr1 93382801 93383003 -149281350 + L2 LINE L2 2754 2959 -355 461 224 164 30 chr1 93383309 93383414 -149280939 + MER5A DNA MER1_type 3 93 -96 2620 105 78 5 chr1 93383414 93383813 -149280540 + MSTA LTR MaLR 1 428 0 461 224 164 30 chr1 93383813 93383872 -149280481 + MER5A DNA MER1_type 93 189 0 636 340 92 28 chr1 93385675 93386221 -149278132 - L2 LINE L2 -277 2995 2410 250 324 0 49 chr1 93386387 93386489 -149277864 - L2 LINE L2 0 3313 3217 239 343 92 38 chr1 93386669 93386984 -149277369 - L2 LINE L2 -342 2972 2641 24 0 0 0 chr1 93387009 93387033 -149277320 + AT_rich Low_complexity Low_complexity 1 24 0 2004 88 0 46 chr1 93387457 93387741 -149276612 - AluSx SINE Alu -9 303 33 987 235 72 34 chr1 93387853 93388202 -149276151 + MER93b LTR ERV1 12 373 0 367 214 47 70 chr1 93388746 93388895 -149275458 + MIR SINE MIR 3 147 -61 333 309 103 78 chr1 93389010 93389495 -149274858 - L1M2 LINE L1 -5746 1103 607 349 174 289 0 chr1 93389719 93389840 -149274513 + HAL1 LINE L1 13 168 -2339 580 256 161 22 chr1 93390080 93390404 -149273949 + HAL1 LINE L1 670 1038 -1469 2244 115 23 0 chr1 93390601 93390906 -149273447 + AluSx SINE Alu 1 312 0 1694 161 13 46 chr1 93390967 93391272 -149273081 + AluJb SINE Alu 1 295 -17 844 108 152 0 chr1 93391396 93391554 -149272799 - MER2 DNA MER2_type -153 192 11 836 191 48 2 chr1 93391673 93391897 -149272456 - MER68 LTR ERV1 0 562 274 480 139 148 19 chr1 93391895 93392003 -149272350 - MER68 LTR ERV1 -440 122 1 * 2163 122 3 0 chr1 93392047 93392390 -149271963 - L1MC1 LINE L1 -216 6117 5774 346 281 143 30 chr1 93392407 93392610 -149271743 - HAL1 LINE L1 -1575 932 707 273 266 0 0 chr1 93392651 93392715 -149271638 - HAL1 LINE L1 -1744 763 700 * 694 64 11 0 chr1 93392711 93392805 -149271548 - L1MC/D LINE L1 -564 5769 5675 1548 169 24 37 chr1 93392811 93393107 -149271246 - AluJo SINE Alu -20 292 1 2303 92 7 0 chr1 93393199 93393493 -149270860 + AluSg SINE Alu 1 296 -14 338 208 31 31 chr1 93393556 93393652 -149270701 + L1 LINE L1 4370 4465 -1681 1261 266 83 11 chr1 93393770 93394759 -149269594 + L1MC/D LINE L1 4616 5687 -524 752 262 121 22 chr1 93394767 93395313 -149269040 + L1M4 LINE L1 3905 4504 -1642 514 257 78 39 chr1 93395340 93395519 -149268834 - L2 LINE L2 -534 2780 2595 251 341 15 0 chr1 93395663 93395795 -149268558 - L2 LINE L2 -720 2594 2461 292 271 115 33 chr1 93395808 93395930 -149268423 + L2 LINE L2 3136 3267 -5 641 152 61 38 chr1 93396098 93396230 -149268123 - AluJo SINE Alu -177 135 1 304 293 86 52 chr1 93396690 93396806 -149267547 + L2 LINE L2 3138 3257 -15 202 146 0 24 chr1 93396982 93397023 -149267330 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 236 295 124 39 chr1 93397700 93397829 -149266524 - MIR SINE MIR -86 176 37 3377 131 65 22 chr1 93397916 93398503 -149265850 + LTR9 LTR ERV1 1 612 0 412 220 37 18 chr1 93398908 93399017 -149265336 + MER5A DNA MER1_type 1 111 -78 * 934 210 11 6 chr1 93399014 93399195 -149265158 - MER5A DNA MER1_type -7 182 1 572 241 84 42 chr1 93399443 93399634 -149264719 - MIR SINE MIR -39 223 25 2303 111 0 0 chr1 93399658 93399964 -149264389 - AluSq SINE Alu -7 306 1 2530 118 39 50 chr1 93400153 93400278 -149264075 - MER61C LTR ERV1 0 434 309 2232 128 13 0 chr1 93400278 93400584 -149263769 + AluSx SINE Alu 1 310 -2 2530 118 39 50 chr1 93400584 93400897 -149263456 - MER61C LTR ERV1 -125 309 1 1029 324 49 50 chr1 93401167 93401865 -149262488 - L3 LINE CR1 -89 1488 792 1799 164 144 43 chr1 93402212 93402533 -149261820 - MLT1C LTR MaLR 0 467 91 2324 101 0 3 chr1 93402533 93402829 -149261524 + AluSg SINE Alu 1 295 -15 1799 164 144 43 chr1 93402829 93402929 -149261424 - MLT1C LTR MaLR -376 91 3 214 306 0 0 chr1 93403067 93403129 -149261224 + (ATGGTG)n Simple_repeat Simple_repeat 5 66 0 250 360 35 0 chr1 93403384 93403470 -149260883 + MIR SINE MIR 29 117 -91 22 0 0 0 chr1 93404008 93404030 -149260323 + AT_rich Low_complexity Low_complexity 1 22 0 11676 196 39 14 chr1 93404311 93406422 -149257931 + L1PA11 LINE L1 1502 4493 -3091 2211 91 7 0 chr1 93406422 93406707 -149257646 + AluSg SINE Alu 1 287 -23 11676 196 39 14 chr1 93406707 93407456 -149256897 + L1PA11 LINE L1 4493 5222 -2362 1612 173 3 60 chr1 93407460 93407760 -149256593 + AluSx SINE Alu 1 283 -29 1132 130 0 24 chr1 93407760 93407916 -149256437 + AluSg/x SINE Alu 144 297 -15 9089 144 32 2 chr1 93407916 93410285 -149254068 + L1PA11 LINE L1 5213 7607 -5 1132 130 0 24 chr1 93410285 93410297 -149254056 + AluSg/x SINE Alu 297 308 -4 33 0 0 0 chr1 93410680 93410713 -149253640 + AT_rich Low_complexity Low_complexity 1 33 0 304 292 219 0 chr1 93410869 93411006 -149253347 + L2 LINE L2 2560 2726 -588 665 203 0 0 chr1 93411014 93411132 -149253221 + FLAM_A SINE Alu 4 121 -12 216 250 59 15 chr1 93411171 93411239 -149253114 + L2 LINE L2 2736 2806 -508 818 227 12 65 chr1 93411245 93411492 -149252861 - MLT1A1 LTR MaLR -112 253 20 452 305 50 0 chr1 93411640 93411785 -149252568 - MIR SINE MIR -61 147 37 204 310 0 70 chr1 93413313 93413384 -149250969 - L2 LINE L2 0 3272 3207 1277 162 77 42 chr1 93414531 93414790 -149249563 + AluJb SINE Alu 22 289 -23 198 0 0 0 chr1 93414790 93414812 -149249541 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 1845 147 21 7 chr1 93415982 93416268 -149248085 + AluJb SINE Alu 1 290 -22 2329 95 0 0 chr1 93416330 93416625 -149247728 - AluSc SINE Alu -14 295 1 1113 202 5 0 chr1 93416733 93416921 -149247432 + MER5A DNA MER1_type 1 189 0 196 139 0 0 chr1 93417248 93417284 -149247069 + L2 LINE L2 3226 3261 -11 610 289 64 18 chr1 93417387 93417605 -149246748 - MIR SINE MIR -12 250 23 1639 170 18 0 chr1 93417605 93417882 -149246471 - AluJb SINE Alu 0 312 31 6036 91 30 4 chr1 93417882 93418641 -149245712 + LTR19C LTR ERV1 1 779 0 24303 206 55 60 chr1 93418670 93419502 -149244851 + LTR19C-int LTR ERV1 30 864 -6132 228 122 0 49 chr1 93419502 93419543 -149244810 + Tigger3(Golem) DNA MER2_type 1085 1123 -1906 24303 206 55 60 chr1 93419543 93421623 -149242730 + LTR19C-int LTR ERV1 864 2952 -4044 3765 69 16 0 chr1 93421623 93422074 -149242279 + LTR22A LTR ERVK 1 458 0 24303 206 55 60 chr1 93422074 93425492 -149238861 + LTR19C-int LTR ERV1 2952 6369 -627 2117 123 75 31 chr1 93425492 93425841 -149238512 + THE1B LTR MaLR 1 364 0 24303 206 55 60 chr1 93425841 93426466 -149237887 + LTR19C-int LTR ERV1 6369 6995 -1 5437 104 60 5 chr1 93426469 93427019 -149237334 + LTR19C LTR ERV1 1 603 -176 2454 84 7 0 chr1 93427019 93427318 -149237035 - AluSc SINE Alu -8 301 1 5437 104 60 5 chr1 93427318 93427506 -149236847 + LTR19C LTR ERV1 603 779 0 2237 108 0 0 chr1 93428225 93428520 -149235833 + AluSq SINE Alu 1 295 -18 333 176 14 27 chr1 93428727 93428792 -149235561 - MLT1J LTR MaLR 0 511 448 1482 132 95 8 chr1 93428792 93429171 -149235182 - LOR1a LTR ERV1 -1 496 1 707 252 116 72 chr1 93429171 93429483 -149234870 - MLT1J LTR MaLR -83 428 103 4839 140 68 53 chr1 93429787 93430175 -149234178 + L1MA6 LINE L1 4890 5270 -1030 2042 130 0 0 chr1 93430175 93430459 -149233894 + AluSq SINE Alu 27 310 -3 4839 140 68 53 chr1 93430459 93430568 -149233785 + L1MA6 LINE L1 5270 5376 -924 207 100 0 0 chr1 93430568 93430598 -149233755 + (TA)n Simple_repeat Simple_repeat 2 31 0 4839 140 68 53 chr1 93430598 93431485 -149232868 + L1MA6 LINE L1 5376 6300 0 722 347 52 30 chr1 93431501 93432005 -149232348 - L2 LINE L2 -685 2629 2115 2019 127 3 31 chr1 93433834 93434156 -149230197 + AluSq SINE Alu 1 313 0 289 220 17 0 chr1 93434556 93434615 -149229738 - L1ME4a LINE L1 -74 6047 5988 954 210 49 89 chr1 93434628 93434975 -149229378 - MER4D LTR ERV1 -8 895 563 2188 93 0 0 chr1 93434982 93435304 -149229049 - AluSc SINE Alu 0 322 1 24 67 0 0 chr1 93435882 93435927 -149228426 + GC_rich Low_complexity Low_complexity 1 45 0 225 0 0 0 chr1 93436057 93436082 -149228271 + (TG)n Simple_repeat Simple_repeat 2 26 0 452 187 112 70 chr1 93436100 93436287 -149228066 - L1ME4a LINE L1 0 6121 5927 2324 96 0 3 chr1 93436566 93436869 -149227484 + AluSq SINE Alu 1 302 -11 551 130 10 0 chr1 93437372 93437472 -149226881 + (TC)n Simple_repeat Simple_repeat 2 102 0 589 113 0 0 chr1 93437727 93437807 -149226546 - MADE1 DNA Mariner 0 80 1 380 244 23 61 chr1 93437942 93438073 -149226280 + MIR SINE MIR 70 195 -67 236 329 43 5 chr1 93438249 93438375 -149225978 - MIR SINE MIR -69 139 22 2146 91 4 0 chr1 93439007 93439281 -149225072 - AluSp SINE Alu -38 275 1 1424 175 205 9 chr1 93440589 93440920 -149223433 + MSTD LTR MaLR 1 396 0 1742 196 15 3 chr1 93441580 93442109 -149222244 + Cheshire DNA MER1_type 1800 2417 -3 276 314 0 0 chr1 93442118 93442188 -149222165 + L2 LINE L2 3238 3307 -6 22 0 0 0 chr1 93442338 93442360 -149221993 + AT_rich Low_complexity Low_complexity 1 22 0 273 280 30 0 chr1 93442480 93442580 -149221773 - L1MC4 LINE L1 -1355 6687 6585 320 252 7 97 chr1 93442780 93442935 -149221418 - L2 LINE L2 -141 3172 3032 493 303 84 20 chr1 93442952 93443302 -149221051 + L1ME LINE L1 5352 5739 -382 288 0 0 0 chr1 93443391 93443423 -149220930 + (TG)n Simple_repeat Simple_repeat 1 32 0 2499 143 67 18 chr1 93444044 93444493 -149219860 + MER101 LTR ERV1 4 474 0 1456 182 3 69 chr1 93444628 93444947 -149219406 + AluJb SINE Alu 1 298 -14 1674 203 15 99 chr1 93445234 93445761 -149218592 + MLT1E LTR MaLR 111 593 0 1408 173 35 3 chr1 93446129 93446412 -149217941 + MER33 DNA MER1_type 1 292 -32 331 297 61 20 chr1 93447806 93447954 -149216399 + L2 LINE L2 2604 2757 -557 189 256 0 0 chr1 93448095 93448134 -149216219 + L2 LINE L2 2985 3023 -249 217 239 0 0 chr1 93448261 93448307 -149216046 + L2 LINE L2 3263 3308 -5 2043 131 13 19 chr1 93448436 93448750 -149215603 - AluJb SINE Alu 0 312 1 1089 143 0 44 chr1 93448831 93449013 -149215340 - FRAM SINE Alu 0 176 3 393 317 64 20 chr1 93449020 93449222 -149215131 + L2 LINE L2 2107 2317 -997 217 260 52 26 chr1 93449278 93449334 -149215019 + L2 LINE L2 2310 2370 -944 2161 197 118 65 chr1 93449334 93449908 -149214445 - MER77 LTR ERV1 0 605 1 217 260 52 26 chr1 93449908 93449928 -149214425 + L2 LINE L2 2370 2388 -926 311 323 81 0 chr1 93450555 93450679 -149213674 + L2 LINE L2 3179 3312 -1 4181 117 73 33 chr1 93451076 93451775 -149212578 - LTR8A LTR ERV1 0 727 1 562 285 53 10 chr1 93452038 93452245 -149212108 + MIR SINE MIR 47 262 0 2282 96 3 0 chr1 93452503 93452794 -149211559 + AluY SINE Alu 1 292 -19 3160 178 59 90 chr1 93453073 93453830 -149210523 - MER50 LTR ERV1 0 734 1 4039 112 22 48 chr1 93454141 93454422 -149209931 - MER4B LTR ERV1 0 610 323 2180 92 7 11 chr1 93454422 93454736 -149209617 - AluSg SINE Alu 0 313 1 4039 112 22 48 chr1 93454736 93455079 -149209274 - MER4B LTR ERV1 -287 323 1 244 184 0 0 chr1 93455168 93455217 -149209136 - MER94 DNA DNA -49 85 37 2094 135 0 0 chr1 93455389 93455685 -149208668 + AluSx SINE Alu 1 296 -16 2213 102 0 0 chr1 93455954 93456268 -149208085 - AluSq SINE Alu 0 314 1 1630 152 11 4 chr1 93457152 93457415 -149206938 + AluJb SINE Alu 1 265 -47 207 274 16 48 chr1 93457750 93457812 -149206541 + MIR SINE MIR 49 108 -154 204 310 62 70 chr1 93459146 93459275 -149205078 + L2 LINE L2 3144 3271 -1 21 57 0 0 chr1 93460843 93460878 -149203475 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr1 93461245 93461270 -149203083 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 93462536 93462558 -149201795 + AT_rich Low_complexity Low_complexity 1 22 0 884 192 53 0 chr1 93462574 93462725 -149201628 + AluJb SINE Alu 1 159 -153 279 136 85 0 chr1 93463266 93463325 -149201028 - MIR SINE MIR -46 216 153 23 0 0 0 chr1 93463410 93463433 -149200920 + AT_rich Low_complexity Low_complexity 1 23 0 555 291 107 22 chr1 93463619 93463890 -149200463 + L2 LINE L2 2479 2772 -542 463 226 130 28 chr1 93463902 93464079 -149200274 + L1MC5 LINE L1 7717 7911 -50 388 257 99 0 chr1 93464946 93465047 -149199306 + L2 LINE L2 3162 3272 0 2260 69 10 3 chr1 93465521 93465811 -149198542 - AluY SINE Alu -19 292 1 1482 186 39 11 chr1 93465840 93466125 -149198228 + AluJo SINE Alu 1 293 -19 2211 109 7 0 chr1 93466253 93466547 -149197806 + AluSx SINE Alu 1 296 -16 21 82 0 0 chr1 93466600 93466649 -149197704 + AT_rich Low_complexity Low_complexity 1 49 0 1587 191 0 3 chr1 93466960 93467247 -149197106 + AluJb SINE Alu 20 305 -7 2219 103 0 0 chr1 93467247 93467538 -149196815 + AluSg SINE Alu 1 291 -19 2468 66 0 28 chr1 93467541 93467861 -149196492 + AluY SINE Alu 1 311 0 446 297 133 63 chr1 93468580 93469008 -149195345 + HAL1 LINE L1 885 1342 -1165 399 238 126 56 chr1 93469022 93469291 -149195062 + HAL1 LINE L1 1397 1684 -823 271 237 90 39 chr1 93469627 93469783 -149194570 + HAL1b LINE L1 754 917 -431 308 279 124 81 chr1 93469843 93470141 -149194212 + HAL1 LINE L1 2182 2492 -15 30 27 0 0 chr1 93471456 93471493 -149192860 + AT_rich Low_complexity Low_complexity 1 37 0 320 264 150 36 chr1 93472036 93472256 -149192097 + L1ME4a LINE L1 5866 6110 -11 952 35 0 0 chr1 93472389 93472505 -149191848 - L1PB1 LINE L1 -23 6128 6013 1627 175 11 21 chr1 93472648 93472971 -149191382 + AluSx SINE Alu 1 320 0 2374 88 0 13 chr1 93474312 93474619 -149189734 + AluSc SINE Alu 1 303 -6 821 131 39 15 chr1 93474687 93474817 -149189536 + FLAM_C SINE Alu 1 133 0 1620 106 5 0 chr1 93475352 93475569 -149188784 + AluSp SINE Alu 71 288 -25 2134 98 3 57 chr1 93475569 93475885 -149188468 + AluSc SINE Alu 1 299 -10 198 398 34 42 chr1 93476163 93476281 -149188072 + L2 LINE L2 2931 3047 -225 601 212 70 129 chr1 93476541 93476782 -149187571 + MIR SINE MIR 10 236 -26 524 269 59 71 chr1 93477437 93477675 -149186678 + MIR SINE MIR 28 262 0 841 219 0 16 chr1 93477714 93477897 -149186456 + MER58A DNA MER1_type 37 216 -8 266 248 105 23 chr1 93478153 93478286 -149186067 - Tigger8 DNA MER2_type -174 492 349 373 284 91 23 chr1 93478333 93478509 -149185844 - Tigger8 DNA MER2_type -426 240 53 240 196 43 0 chr1 93479836 93479882 -149184471 - L2 LINE L2 -4 3309 3262 404 285 96 36 chr1 93481234 93481483 -149182870 - MARNA DNA Mariner -53 533 270 23 54 0 0 chr1 93481679 93481716 -149182637 + AT_rich Low_complexity Low_complexity 1 37 0 464 320 125 68 chr1 93481988 93482660 -149181693 + L2 LINE L2 2353 3067 -205 208 309 49 12 chr1 93482694 93482775 -149181578 + L2 LINE L2 3139 3222 -50 239 200 0 18 chr1 93483848 93483903 -149180450 + A-rich Low_complexity Low_complexity 1 54 0 1008 147 135 19 chr1 93484724 93484983 -149179370 + L1MA8 LINE L1 6002 6290 -1 209 252 243 10 chr1 93485109 93485212 -149179141 + MIR3 SINE MIR 30 156 -52 188 139 0 23 chr1 93485694 93485737 -149178616 + (CATA)n Simple_repeat Simple_repeat 3 44 0 233 271 150 22 chr1 93486525 93486796 -149177557 + L1ME2 LINE L1 5483 5793 -328 581 205 87 32 chr1 93487025 93487210 -149177143 - Charlie8 DNA MER1_type -2141 276 82 516 236 75 6 chr1 93487236 93487397 -149176956 + L1ME2 LINE L1 5983 6154 -10 2069 107 21 3 chr1 93487538 93487829 -149176524 + AluSx SINE Alu 3 298 -14 840 304 164 26 chr1 93487834 93488577 -149175776 - L2 LINE L2 -4 3309 2448 229 310 27 87 chr1 93488903 93489087 -149175266 + MIR SINE MIR 89 261 -1 3627 83 31 110 chr1 93490191 93490875 -149173478 + MER4A LTR ERV1 1 630 -34 317 258 92 50 chr1 93491401 93491508 -149172845 - MIR3 SINE MIR -69 139 25 2273 103 26 0 chr1 93491508 93491810 -149172543 - AluSx SINE Alu -2 310 1 317 258 92 50 chr1 93491810 93491822 -149172531 - MIR3 SINE MIR -183 25 15 1512 222 101 41 chr1 93492268 93492801 -149171552 + MLT1F1 LTR MaLR 4 567 0 408 229 184 0 chr1 93492992 93493101 -149171252 + L2 LINE L2 3139 3267 -5 234 231 87 19 chr1 93494424 93494528 -149169825 + MIR SINE MIR 123 233 -29 943 171 101 37 chr1 93494547 93494764 -149169589 - MIR SINE MIR -31 231 1 436 237 59 146 chr1 93495064 93495351 -149169002 + MIR SINE MIR 1 262 0 281 183 21 65 chr1 93496049 93496142 -149168211 + L1MC/D LINE L1 5699 5787 -2021 295 284 161 37 chr1 93497070 93497232 -149167121 + MIR3 SINE MIR 20 201 -7 2211 101 7 7 chr1 93497300 93497596 -149166757 - AluSg SINE Alu -14 296 1 565 270 113 10 chr1 93497676 93497880 -149166473 - MIR SINE MIR 0 262 38 754 66 260 0 chr1 93497946 93498087 -149166266 - L1PA8 LINE L1 -8 6164 5990 629 175 208 0 chr1 93498954 93499108 -149165245 + MER5A DNA MER1_type 4 189 0 466 210 99 82 chr1 93499373 93499606 -149164747 + L1ME3A LINE L1 5608 5844 -326 267 292 156 7 chr1 93500228 93500382 -149163971 - MIR SINE MIR -20 242 66 217 254 33 115 chr1 93500482 93500604 -149163749 + MIR3 SINE MIR 93 204 -4 22 35 0 0 chr1 93500966 93500995 -149163358 + AT_rich Low_complexity Low_complexity 1 29 0 410 300 211 11 chr1 93501848 93502028 -149162325 - MIR SINE MIR -16 246 31 182 345 112 9 chr1 93502249 93502365 -149161988 + L2 LINE L2 3139 3266 -6 194 271 86 14 chr1 93502840 93502910 -149161443 + L2 LINE L2 3194 3268 -4 402 253 128 107 chr1 93504708 93505406 -149158947 + L1M4c LINE L1 526 1060 -5789 1756 167 127 23 chr1 93506581 93507055 -149157298 - Charlie1b DNA MER1_type 0 523 1 279 312 168 15 chr1 93507091 93507302 -149157051 + MLT1L LTR MaLR 182 359 -256 13964 115 56 15 chr1 93507302 93508351 -149156002 + Tigger1 DNA MER2_type 1 1005 -1413 1882 127 65 14 chr1 93508351 93508643 -149155710 - AluJb SINE Alu -5 307 1 13964 115 56 15 chr1 93508643 93509915 -149154438 + Tigger1 DNA MER2_type 1005 2418 0 279 312 168 15 chr1 93509915 93510036 -149154317 + MLT1L LTR MaLR 359 565 -50 2404 147 49 2 chr1 93510111 93510520 -149153833 - MSTA LTR MaLR 0 428 1 997 273 87 31 chr1 93510648 93511264 -149153089 + L2 LINE L2 2644 3303 -10 231 279 0 0 chr1 93511267 93511335 -149153018 - MARNA DNA Mariner -62 524 457 29 47 0 0 chr1 93511420 93511463 -149152890 + AT_rich Low_complexity Low_complexity 1 43 0 225 274 27 0 chr1 93511599 93511672 -149152681 - MARNA DNA Mariner -361 225 151 255 309 211 15 chr1 93511775 93512111 -149152242 + L2 LINE L2 2625 3022 -291 319 268 36 36 chr1 93512152 93512264 -149152089 + L2 LINE L2 3159 3270 -43 955 248 32 3 chr1 93512286 93512596 -149151757 + L1M4c LINE L1 1981 2299 -4551 878 188 7 0 chr1 93512599 93512748 -149151605 + FRAM SINE Alu 1 150 -26 189 107 0 0 chr1 93514242 93514270 -149150083 + (CA)n Simple_repeat Simple_repeat 1 28 0 558 0 0 0 chr1 93514543 93514605 -149149748 + (CA)n Simple_repeat Simple_repeat 1 62 0 216 0 0 0 chr1 93514604 93514628 -149149725 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 218 213 64 0 chr1 93514934 93514981 -149149372 - L2 LINE L2 -2 3311 3262 289 216 129 29 chr1 93515126 93515265 -149149088 + MLT1L LTR MaLR 452 604 -11 181 250 197 0 chr1 93516893 93516969 -149147384 + MIR SINE MIR 2 92 -170 806 221 48 22 chr1 93517100 93517302 -149147051 - MIR SINE MIR -13 249 42 751 193 83 9 chr1 93517459 93517677 -149146676 + Charlie2 DNA MER1_type 37 270 -2592 2818 205 66 20 chr1 93517750 93518615 -149145738 + Charlie2 DNA MER1_type 1958 2862 0 263 306 122 10 chr1 93519176 93519274 -149145079 + MIR SINE MIR 36 144 -64 366 262 56 0 chr1 93519326 93519433 -149144920 - L2 LINE L2 -1 3312 3200 633 323 62 32 chr1 93519873 93520245 -149144108 - L2 LINE L2 -439 2875 2493 2578 239 119 110 chr1 93520379 93522271 -149142082 + L2 LINE L2 133 2125 -1189 671 190 136 15 chr1 93522276 93522478 -149141875 + MLT1E1 LTR MaLR 5 239 -415 471 303 26 13 chr1 93523048 93523203 -149141150 - MLT1K LTR MaLR 0 588 432 299 287 110 77 chr1 93525133 93525342 -149139011 - MLT1K LTR MaLR -366 222 7 267 216 52 72 chr1 93526255 93526352 -149138001 + MLT1K LTR MaLR 4 98 -490 650 187 81 0 chr1 93526385 93526508 -149137845 - FLAM_C SINE Alu 0 133 1 306 306 59 32 chr1 93526561 93526747 -149137606 + MLT1K LTR MaLR 143 333 -255 185 209 0 104 chr1 93527254 93527321 -149137032 - L2 LINE L2 -3158 156 97 593 362 73 145 chr1 93527528 93527867 -149136486 - L2 LINE L2 -33 3280 2918 2190 170 73 51 chr1 93527867 93527932 -149136421 - MLT1D LTR MaLR 0 505 443 1944 106 0 76 chr1 93527932 93528085 -149136268 + AluSg1 SINE Alu 1 118 -209 2530 59 0 3 chr1 93528085 93528388 -149135965 + AluY SINE Alu 1 302 -9 1944 106 0 76 chr1 93528388 93528584 -149135769 + AluSg1 SINE Alu 118 327 0 2190 170 73 51 chr1 93528584 93529011 -149135342 - MLT1D LTR MaLR -62 443 1 593 362 73 145 chr1 93529011 93529223 -149135130 - L2 LINE L2 -395 2918 2587 239 351 130 0 chr1 93529226 93529380 -149134973 + MIR SINE MIR 89 262 0 224 241 76 13 chr1 93529446 93529525 -149134828 - MIR SINE MIR -72 136 52 367 321 148 5 chr1 93529669 93529878 -149134475 + MIR SINE MIR 24 262 0 637 216 44 40 chr1 93531184 93531411 -149132942 + L1MC5 LINE L1 7351 7578 -383 5350 166 14 17 chr1 93531432 93531782 -149132571 + L1MA9 LINE L1 4986 5336 -976 2465 76 0 3 chr1 93531782 93532085 -149132268 + AluY SINE Alu 1 302 -9 5350 166 14 17 chr1 93532085 93533061 -149131292 + L1MA9 LINE L1 5336 6312 0 430 209 19 15 chr1 93533099 93533304 -149131049 + L1MC5 LINE L1 7688 7926 -35 237 316 13 25 chr1 93533430 93533509 -149130844 + MIR SINE MIR 185 262 0 211 218 146 0 chr1 93534889 93534944 -149129409 - L2 LINE L2 0 3272 3210 1885 98 9 14 chr1 93536578 93537119 -149127234 - MER4A LTR ERV1 0 664 1 225 233 0 0 chr1 93537127 93537170 -149127183 - LTR67 LTR ERVL -392 165 123 2042 164 47 17 chr1 93537564 93537966 -149126387 + MLT2D LTR ERVL 1 414 0 25 0 0 0 chr1 93538024 93538049 -149126304 + AT_rich Low_complexity Low_complexity 1 25 0 199 333 37 25 chr1 93539183 93539264 -149125089 - L2 LINE L2 -32 3240 3159 1089 146 156 0 chr1 93540006 93540205 -149124148 - MER30 DNA MER1_type 0 230 1 2355 100 121 21 chr1 93540670 93541059 -149123294 + MSTA LTR MaLR 1 428 0 1426 178 56 22 chr1 93541454 93541775 -149122578 - MLT2D LTR ERVL 0 414 83 16386 171 27 10 chr1 93542413 93544800 -149119553 - L1PA15 LINE L1 -4 6161 3815 1643 113 5 5 chr1 93544800 93545022 -149119331 - AluSq SINE Alu -91 222 1 16386 171 27 10 chr1 93545022 93546868 -149117485 - L1PA15 LINE L1 -2350 3815 1853 2476 89 0 13 chr1 93546868 93547182 -149117171 - AluY SINE Alu -1 310 1 16386 171 27 10 chr1 93547182 93547395 -149116958 - L1PA15 LINE L1 -4312 1853 1645 707 224 54 54 chr1 93548005 93548085 -149116268 - L1M4 LINE L1 -2360 3786 3707 2061 140 7 0 chr1 93548085 93548378 -149115975 - AluSx SINE Alu -17 295 1 707 224 54 54 chr1 93548378 93548538 -149115815 - L1M4 LINE L1 -2438 3708 3546 432 123 22 184 chr1 93548580 93548759 -149115594 - MER53 DNA DNA 0 189 40 804 172 0 0 chr1 93548760 93548905 -149115448 + L1MB7 LINE L1 5647 5791 -393 1981 173 106 34 chr1 93548905 93549378 -149114975 - MLT2B1 LTR ERVL -1 519 13 1883 180 8 0 chr1 93549389 93549756 -149114597 + L1MB7 LINE L1 5789 6158 -26 294 209 30 30 chr1 93549815 93549882 -149114471 - LTR67 LTR ERVL -377 180 114 1712 166 14 7 chr1 93549948 93550231 -149114122 + AluJo SINE Alu 21 305 -7 394 273 55 9 chr1 93550266 93550376 -149113977 + MIR SINE MIR 27 141 -121 747 239 6 18 chr1 93550389 93550552 -149113801 + L2 LINE L2 2613 2773 -541 342 335 126 50 chr1 93550926 93551592 -149112761 + L1M4c LINE L1 918 1634 -4750 21 0 0 0 chr1 93552061 93552082 -149112271 + GC_rich Low_complexity Low_complexity 1 21 0 373 268 137 7 chr1 93553284 93553437 -149110916 + MIR SINE MIR 34 206 -56 222 286 0 0 chr1 93553627 93553683 -149110670 - MIR3 SINE MIR -3 205 150 2120 86 7 20 chr1 93553890 93554191 -149110162 + AluSc SINE Alu 1 297 -12 6509 122 25 15 chr1 93554698 93555376 -149108977 + L1MA3 LINE L1 4370 5040 -1265 2095 128 0 10 chr1 93555376 93555674 -149108679 + AluSx SINE Alu 5 299 -13 6509 122 25 15 chr1 93555674 93555796 -149108557 + L1MA3 LINE L1 5040 5159 -1146 1456 155 105 22 chr1 93555796 93556073 -149108280 + AluJb SINE Alu 1 300 -12 6509 122 25 15 chr1 93556073 93557193 -149107160 + L1MA3 LINE L1 5159 6305 0 2342 96 3 3 chr1 93557559 93557872 -149106481 - AluSp SINE Alu 0 313 1 204 324 248 0 chr1 93558149 93558294 -149106059 - MIR3 SINE MIR -1 207 27 353 366 26 10 chr1 93558568 93558762 -149105591 - MER117 DNA MER1_type 0 197 1 188 35 35 0 chr1 93558996 93559025 -149105328 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2018 83 3 55 chr1 93559030 93559320 -149105033 - AluSp SINE Alu -33 280 6 2321 95 0 10 chr1 93559734 93560038 -149104315 - AluSx SINE Alu -11 301 1 1123 166 67 14 chr1 93560260 93560483 -149103870 - MER46A DNA MER2_type -1 235 1 2202 112 0 10 chr1 93560577 93560880 -149103473 + AluSx SINE Alu 1 300 -12 21 71 0 0 chr1 93561497 93561539 -149102814 + AT_rich Low_complexity Low_complexity 1 42 0 1532 270 62 18 chr1 93562393 93562841 -149101512 + L2 LINE L2 832 1299 -2015 2515 246 40 84 chr1 93562841 93563782 -149100571 + L2 LINE L2 1775 2674 -640 632 256 82 49 chr1 93563849 93564361 -149099992 + L1MC5 LINE L1 7262 7790 -171 671 277 136 27 chr1 93564412 93564846 -149099507 + L2 LINE L2 2702 3187 -126 24 0 0 0 chr1 93564846 93564870 -149099483 + AT_rich Low_complexity Low_complexity 1 24 0 645 189 209 26 chr1 93564917 93565108 -149099245 - MER96B DNA MER1_type? 0 417 192 749 203 14 7 chr1 93566885 93567023 -149097330 + AluJb SINE Alu 168 306 -6 308 174 0 14 chr1 93567030 93567099 -149097254 + GA-rich Low_complexity Low_complexity 3 70 0 1218 289 69 32 chr1 93567242 93567734 -149096619 + L2 LINE L2 2804 3313 0 2067 130 20 0 chr1 93568805 93569098 -149095255 - AluSx SINE Alu -13 299 1 391 273 76 30 chr1 93569365 93569497 -149094856 + L2 LINE L2 3134 3271 -1 242 245 19 0 chr1 93569745 93569798 -149094555 - L3 LINE CR1 -5 1572 1519 21 57 0 0 chr1 93569809 93569844 -149094509 + AT_rich Low_complexity Low_complexity 1 35 0 40 21 0 0 chr1 93569921 93569968 -149094385 + AT_rich Low_complexity Low_complexity 1 47 0 248 315 130 25 chr1 93570275 93570437 -149093916 - L2 LINE L2 -560 2754 2576 * 971 294 121 44 chr1 93570433 93570861 -149093492 + L2 LINE L2 2823 3290 -23 2057 103 37 0 chr1 93570861 93571160 -149093193 - AluSx SINE Alu 0 309 1 971 294 121 44 chr1 93571160 93571186 -149093167 + L2 LINE L2 3290 3313 0 257 356 0 0 chr1 93571246 93571319 -149093034 + MIR SINE MIR 28 100 -162 227 182 0 76 chr1 93571319 93571385 -149092968 + MIR SINE MIR 202 262 0 1893 163 7 3 chr1 93572480 93572781 -149091572 + AluJb SINE Alu 1 302 -10 22 35 0 0 chr1 93572787 93572816 -149091537 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 93572876 93572905 -149091448 + AT_rich Low_complexity Low_complexity 1 29 0 276 254 35 26 chr1 93573335 93573449 -149090904 - L1ME4a LINE L1 -69 6052 5938 24 53 0 0 chr1 93573494 93573532 -149090821 + AT_rich Low_complexity Low_complexity 1 38 0 2291 101 0 3 chr1 93573625 93573923 -149090430 - AluSx SINE Alu -15 297 1 625 203 36 0 chr1 93574107 93574245 -149090108 - L1M4 LINE L1 -3654 2492 2350 660 238 199 56 chr1 93574334 93574762 -149089591 - L1ME4a LINE L1 -206 5964 5476 21 36 0 0 chr1 93574892 93574920 -149089433 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr1 93575181 93575212 -149089141 + AT_rich Low_complexity Low_complexity 1 31 0 243 243 81 0 chr1 93575228 93575302 -149089051 + L2 LINE L2 3234 3313 0 24 0 0 0 chr1 93575418 93575442 -149088911 + AT_rich Low_complexity Low_complexity 1 24 0 1793 85 137 7 chr1 93575469 93575740 -149088613 - AluSg SINE Alu -4 306 1 2033 97 0 72 chr1 93575753 93576074 -149088279 - AluSx SINE Alu -14 298 1 281 365 39 0 chr1 93576116 93576220 -149088133 + MER91C DNA MER1_type 1 108 -32 303 286 111 24 chr1 93576579 93576705 -149087648 - MIR SINE MIR -119 143 7 2009 129 7 0 chr1 93577049 93577357 -149086996 - AluSx SINE Alu 0 310 1 1679 160 52 3 chr1 93577465 93577752 -149086601 - AluJb SINE Alu -10 302 2 2196 126 0 0 chr1 93578107 93578401 -149085952 + AluSx SINE Alu 1 294 -18 226 239 0 0 chr1 93578509 93578555 -149085798 - MER103 DNA DNA -113 53 8 21 36 0 0 chr1 93579384 93579412 -149084941 + AT_rich Low_complexity Low_complexity 1 28 0 220 189 0 0 chr1 93580059 93580096 -149084257 + MIR SINE MIR 74 110 -152 998 221 40 51 chr1 93580241 93580494 -149083859 - MIR SINE MIR 0 262 13 524 228 83 7 chr1 93580550 93580695 -149083658 - MIR SINE MIR -21 241 86 522 237 191 6 chr1 93580739 93580912 -149083441 + L2 LINE L2 1227 1431 -1883 2136 231 71 20 chr1 93580984 93581691 -149082662 - L1M4 LINE L1 -1225 4921 4179 2539 298 81 60 chr1 93582002 93582342 -149082011 + ERVL LTR ERVL 979 1310 -4454 2188 53 0 23 chr1 93582342 93582643 -149081710 - AluY SINE Alu -17 294 1 2539 298 81 60 chr1 93582643 93582767 -149081586 + ERVL LTR ERVL 1310 1430 -4334 2271 107 10 3 chr1 93582767 93583075 -149081278 - AluSg SINE Alu 0 310 1 2539 298 81 60 chr1 93583075 93584706 -149079647 + ERVL LTR ERVL 1430 3171 -2593 1896 154 0 3 chr1 93584706 93584998 -149079355 - AluJb SINE Alu -21 291 1 2539 298 81 60 chr1 93584998 93585153 -149079200 + ERVL LTR ERVL 3171 3321 -2443 269 200 33 0 chr1 93585163 93585223 -149079130 - L1M1 LINE L1 -545 5757 5696 451 298 85 16 chr1 93585229 93585645 -149078708 - L1ME LINE L1 -511 5720 5269 355 305 72 33 chr1 93585714 93586199 -149078154 - L1MEc LINE L1 -3582 2633 2168 251 303 148 25 chr1 93586390 93586667 -149077686 - HAL1b LINE L1 -491 857 547 557 220 163 0 chr1 93586704 93586845 -149077508 + MER58C DNA MER1_type 52 215 0 704 270 71 61 chr1 93586861 93587368 -149076985 - HAL1b LINE L1 -810 538 27 1868 98 22 22 chr1 93587847 93588121 -149076232 - AluSx SINE Alu 0 312 39 1777 102 118 41 chr1 93588752 93589067 -149075286 - MER44D DNA MER2_type 0 609 1 2566 97 123 5 chr1 93589223 93589604 -149074749 - MSTA LTR MaLR -2 426 1 217 293 120 58 chr1 93589797 93589988 -149074365 - L2 LINE L2 -890 2424 2222 1036 106 34 22 chr1 93590257 93590436 -149073917 + L1MB3 LINE L1 6001 6181 -2 2394 98 0 0 chr1 93590451 93590756 -149073597 - AluSx SINE Alu -7 305 1 1021 196 151 22 chr1 93592088 93592400 -149071953 + MLT1D LTR MaLR 4 355 -150 310 279 0 27 chr1 93592549 93592660 -149071693 - MIR SINE MIR -71 137 30 202 296 52 70 chr1 93592993 93593108 -149071245 - L2 LINE L2 -2914 400 288 454 260 119 60 chr1 93593723 93593958 -149070395 - MIR SINE MIR 0 262 14 271 311 16 49 chr1 93594014 93594136 -149070217 + L2 LINE L2 2539 2656 -658 2216 186 41 55 chr1 93594464 93594976 -149069377 + MLT1D LTR MaLR 1 505 0 289 261 57 23 chr1 93595010 93595098 -149069255 + L2 LINE L2 2934 3024 -248 219 300 11 78 chr1 93595234 93595324 -149069029 + L2 LINE L2 3224 3307 -6 2232 103 0 3 chr1 93595520 93595821 -149068532 - AluY SINE Alu -11 300 1 1508 150 9 91 chr1 93595941 93596261 -149068092 + AluJo SINE Alu 1 294 -18 352 179 284 52 chr1 93596634 93596701 -149067652 + MER5B DNA MER1_type 4 54 -124 2300 104 7 0 chr1 93596701 93596998 -149067355 - AluSq SINE Alu -14 299 1 352 179 284 52 chr1 93596998 93597064 -149067289 + MER5B DNA MER1_type 54 168 -10 396 281 58 8 chr1 93598991 93599112 -149065241 + L2 LINE L2 3146 3272 0 607 201 52 0 chr1 93599819 93599953 -149064400 + MER112 DNA MER1_type 114 254 -6 274 272 37 25 chr1 93600469 93600550 -149063803 + L2 LINE L2 3176 3257 -15 352 216 68 0 chr1 93600652 93600726 -149063627 + MER2 DNA MER2_type 42 120 -225 896 185 124 0 chr1 93600726 93600904 -149063449 + L1PB4 LINE L1 5953 6152 -4 804 194 152 42 chr1 93600904 93601141 -149063212 + MER2 DNA MER2_type 83 345 0 262 22 89 0 chr1 93601245 93601290 -149063063 + CT-rich Low_complexity Low_complexity 1 49 0 793 117 45 0 chr1 93601290 93601401 -149062952 - FLAM_C SINE Alu -17 126 11 215 316 128 0 chr1 93601432 93601549 -149062804 - L2 LINE L2 0 3272 3141 2276 106 3 0 chr1 93601676 93601979 -149062374 - AluSg SINE Alu -6 304 1 552 280 158 18 chr1 93602255 93602668 -149061685 + L2 LINE L2 2791 3313 0 27 0 0 0 chr1 93603977 93604004 -149060349 + AT_rich Low_complexity Low_complexity 1 27 0 180 254 0 0 chr1 93604106 93604165 -149060188 + (TA)n Simple_repeat Simple_repeat 1 59 0 322 257 101 9 chr1 93605584 93605693 -149058660 - L2 LINE L2 -1 3312 3194 1800 157 0 7 chr1 93606604 93606878 -149057475 + AluJo SINE Alu 23 294 -18 2191 108 0 7 chr1 93606880 93607185 -149057168 + AluSg1 SINE Alu 1 303 -6 664 163 10 0 chr1 93607195 93607293 -149057060 + AluJb SINE Alu 201 299 -13 270 320 104 0 chr1 93607424 93607549 -149056804 - MLT1L LTR MaLR 0 615 478 306 297 36 36 chr1 93607590 93607799 -149056554 - MLT1L LTR MaLR -224 391 80 446 255 50 35 chr1 93607898 93608039 -149056314 - MIR SINE MIR -108 154 12 2540 169 94 15 chr1 93609001 93609469 -149054884 + MLT1D LTR MaLR 1 505 0 219 103 0 0 chr1 93610172 93610211 -149054142 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1904 167 3 13 chr1 93610841 93611147 -149053206 + AluJo SINE Alu 1 303 -9 481 300 22 22 chr1 93611206 93611386 -149052967 - MER117 DNA MER1_type -1 196 17 1920 147 0 26 chr1 93611672 93611979 -149052374 + AluSx SINE Alu 14 312 0 308 231 167 28 chr1 93612424 93612532 -149051821 + L2 LINE L2 3148 3270 -2 194 347 69 0 chr1 93612728 93612800 -149051553 - MIR SINE MIR -111 97 21 201 74 0 0 chr1 93613178 93613205 -149051148 + (TTG)n Simple_repeat Simple_repeat 1 27 0 358 283 53 0 chr1 93613552 93613665 -149050688 + MIR SINE MIR 124 242 -20 1413 160 13 4 chr1 93613914 93614145 -149050208 - L1MC1 LINE L1 -6 6327 6095 231 61 0 0 chr1 93614178 93614211 -149050142 + (CA)n Simple_repeat Simple_repeat 2 34 0 257 277 139 0 chr1 93614283 93614384 -149049969 - L2 LINE L2 0 3272 3158 270 0 0 0 chr1 93615680 93615710 -149048643 + (TG)n Simple_repeat Simple_repeat 2 31 0 477 215 94 78 chr1 93616740 93616931 -149047422 - MER58C DNA MER1_type -1 214 21 404 335 18 18 chr1 93616941 93617108 -149047245 - L3 LINE CR1 -73 1504 1338 206 105 26 0 chr1 93617625 93617663 -149046690 + CT-rich Low_complexity Low_complexity 1 39 0 870 271 79 75 chr1 93617804 93618298 -149046055 + L1MC4a LINE L1 6414 6909 -899 351 239 58 58 chr1 93618359 93618514 -149045839 + L1ME3A LINE L1 6012 6166 -4 26 0 0 0 chr1 93619357 93619383 -149044970 + AT_rich Low_complexity Low_complexity 1 26 0 336 209 14 48 chr1 93619399 93619696 -149044657 + (TTATA)n Simple_repeat Simple_repeat 1 287 0 305 126 204 0 chr1 93619739 93619842 -149044511 + MER5C DNA MER1_type 199 322 -2 1292 257 92 28 chr1 93619842 93620500 -149043853 + L1ME3A LINE L1 5136 5851 -319 516 203 32 6 chr1 93620912 93621025 -149043328 - MLT1A2 LTR MaLR -276 98 1 1841 172 0 0 chr1 93621788 93622078 -149042275 - AluJb SINE Alu -22 290 1 1652 165 119 35 chr1 93622953 93623383 -149040970 + MLT1D LTR MaLR 2 467 -38 550 262 131 96 chr1 93623647 93624095 -149040258 - MLT1J LTR MaLR 0 615 28 488 213 166 41 chr1 93624419 93624588 -149039765 - MIR SINE MIR -43 219 30 3432 204 89 10 chr1 93624993 93625860 -149038493 - L1MC4a LINE L1 -196 7612 6678 205 309 136 0 chr1 93625947 93626028 -149038325 - MIR SINE MIR -164 98 7 201 289 133 12 chr1 93626424 93626507 -149037846 - MIR SINE MIR -78 130 38 529 259 31 72 chr1 93626819 93627012 -149037341 + MIR3 SINE MIR 9 193 -15 221 291 95 32 chr1 93628156 93628314 -149036039 + MIR3 SINE MIR 14 181 -27 363 243 86 26 chr1 93628559 93628711 -149035642 + MER117 DNA MER1_type 2 162 -35 211 320 0 13 chr1 93628779 93628854 -149035499 - MIR SINE MIR -115 93 20 312 203 0 0 chr1 93630667 93630726 -149033627 - L2 LINE L2 -1 3271 3213 23 33 0 0 chr1 93631766 93631796 -149032557 + AT_rich Low_complexity Low_complexity 1 30 0 1911 126 3 41 chr1 93632310 93632634 -149031719 + AluSx SINE Alu 1 313 0 391 299 34 8 chr1 93633066 93633183 -149031170 - L2 LINE L2 -3 3310 3191 3681 117 9 9 chr1 93633185 93633713 -149030640 + MER1A DNA MER1_type 1 528 -1 317 286 130 42 chr1 93633714 93633952 -149030401 - L2 LINE L2 -117 3196 2938 652 281 21 54 chr1 93634011 93634176 -149030177 - MIR SINE MIR -13 249 93 1370 66 172 10 chr1 93634176 93634374 -149029979 - MER30 DNA MER1_type 0 230 1 652 281 21 54 chr1 93634374 93634450 -149029903 - MIR SINE MIR -169 93 16 2609 171 51 48 chr1 93635425 93635993 -149028360 + L1MA9 LINE L1 5705 6274 -38 330 159 80 166 chr1 93636244 93636407 -149027946 + MIR SINE MIR 114 262 0 201 74 0 0 chr1 93636454 93636481 -149027872 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 305 289 224 30 chr1 93637979 93638283 -149026070 - L2 LINE L2 -1 3271 2909 186 308 19 0 chr1 93638250 93638302 -149026051 + L2 LINE L2 3198 3250 -22 * 189 286 0 0 chr1 93638462 93638504 -149025849 - L2 LINE L2 -571 2743 2702 259 271 52 10 chr1 93639081 93639177 -149025176 + MIR SINE MIR 159 258 -4 252 336 38 23 chr1 93639315 93639446 -149024907 + L2 LINE L2 3163 3295 -18 690 297 43 13 chr1 93640948 93641322 -149023031 + L1ME3A LINE L1 2485 2869 -3277 1387 127 32 32 chr1 93641332 93641553 -149022800 + L1MB5 LINE L1 5945 6165 -9 2378 91 3 0 chr1 93641589 93641885 -149022468 - AluSg SINE Alu -13 297 1 302 253 11 23 chr1 93641907 93641994 -149022359 + L1ME3A LINE L1 6068 6153 -17 651 270 158 32 chr1 93642227 93642727 -149021626 + L1ME3A LINE L1 3002 3564 -2582 1741 76 14 5 chr1 93643000 93643223 -149021130 - L1PA7 LINE L1 0 6154 5930 2064 239 124 16 chr1 93643397 93644099 -149020254 - LTR50 LTR ERVL -17 778 1 1775 272 75 55 chr1 93644941 93645196 -149019157 + L1ME3A LINE L1 3639 3887 -2259 2067 140 3 3 chr1 93645196 93645503 -149018850 - AluSx SINE Alu -5 307 1 1775 272 75 55 chr1 93645503 93646260 -149018093 + L1ME3A LINE L1 3887 4681 -1465 189 0 0 0 chr1 93646260 93646281 -149018072 + (TG)n Simple_repeat Simple_repeat 1 21 0 1775 272 75 55 chr1 93646281 93646458 -149017895 + L1ME3A LINE L1 4681 4853 -1293 880 268 70 57 chr1 93646683 93647623 -149016730 + L1ME3A LINE L1 4931 5883 -287 795 96 45 96 chr1 93647771 93647949 -149016404 - MER53 DNA DNA -20 169 1 189 0 0 0 chr1 93648209 93648230 -149016123 + (TC)n Simple_repeat Simple_repeat 2 22 0 301 243 19 37 chr1 93648757 93648864 -149015489 + L2 LINE L2 3208 3312 -1 1950 138 45 0 chr1 93649079 93649370 -149014983 - AluSx SINE Alu -8 304 1 286 191 103 0 chr1 93649624 93649692 -149014661 - L2 LINE L2 -2 3270 3196 410 236 87 31 chr1 93649692 93649819 -149014534 - MIR SINE MIR -10 252 119 478 312 158 0 chr1 93649877 93650156 -149014197 - L1ME LINE L1 -348 5822 5500 1900 227 89 24 chr1 93650248 93650741 -149013612 - MLT1E LTR MaLR -1 592 68 22 35 0 0 chr1 93651334 93651363 -149012990 + AT_rich Low_complexity Low_complexity 1 29 0 1547 229 53 35 chr1 93652172 93652626 -149011727 - MLT1C LTR MaLR 0 467 6 414 0 0 0 chr1 93652905 93652951 -149011402 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 258 176 0 0 chr1 93652952 93653003 -149011350 + (TA)n Simple_repeat Simple_repeat 2 52 0 1388 177 16 20 chr1 93653306 93653555 -149010798 + AluJo SINE Alu 27 274 -38 225 94 0 0 chr1 93653555 93653587 -149010766 + (GA)n Simple_repeat Simple_repeat 2 33 0 384 22 0 0 chr1 93653587 93653632 -149010721 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 1063 198 19 9 chr1 93653632 93653844 -149010509 + AluJo SINE Alu 99 312 0 1120 93 0 15 chr1 93653877 93654081 -149010272 + (GAAA)n Simple_repeat Simple_repeat 4 202 0 397 297 38 60 chr1 93654100 93654285 -149010068 + MIR SINE MIR 80 260 -2 1996 117 3 11 chr1 93654299 93654607 -149009746 + AluSx SINE Alu 1 306 0 1279 140 81 0 chr1 93654697 93654761 -149009592 + L1MA10 LINE L1 6094 6151 -183 234 105 0 0 chr1 93654761 93654799 -149009554 + (CA)n Simple_repeat Simple_repeat 1 38 0 1279 140 81 0 chr1 93654799 93654956 -149009397 + L1MA10 LINE L1 6151 6333 -1 2607 243 138 7 chr1 93655024 93656166 -149008187 - L2 LINE L2 -2 3311 2010 25 0 0 0 chr1 93656354 93656379 -149007974 + AT_rich Low_complexity Low_complexity 1 25 0 2309 96 3 3 chr1 93656667 93656970 -149007383 - AluSx SINE Alu -9 303 1 208 348 35 26 chr1 93657009 93657124 -149007229 + L2 LINE L2 3195 3310 -3 528 296 86 23 chr1 93658474 93658694 -149005659 + MIR SINE MIR 23 256 -6 399 238 168 0 chr1 93658848 93658949 -149005404 - MER5B DNA MER1_type -3 175 58 2770 278 148 19 chr1 93658960 93660189 -149004164 + L2 LINE L2 1128 2514 -800 855 234 98 0 chr1 93660277 93660482 -149003871 - MIR SINE MIR -33 229 5 2155 111 0 0 chr1 93661259 93661547 -149002806 - AluSc SINE Alu -21 288 1 312 27 0 0 chr1 93661638 93661675 -149002678 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2360 84 0 0 chr1 93661677 93661964 -149002389 - AluSg SINE Alu -23 287 1 352 213 118 44 chr1 93662426 93662562 -149001791 + LTR33A LTR ERVL 376 521 -2 1871 156 23 13 chr1 93662715 93663023 -149001330 + AluJb SINE Alu 1 311 -1 25 0 0 0 chr1 93663592 93663617 -149000736 + AT_rich Low_complexity Low_complexity 1 25 0 2015 136 3 14 chr1 93663619 93663913 -149000440 - AluSx SINE Alu -21 291 1 2151 136 0 7 chr1 93666582 93666891 -148997462 - AluSx SINE Alu -5 307 1 297 230 0 0 chr1 93667287 93667361 -148996992 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 241 294 0 22 chr1 93668622 93668714 -148995639 - MIR SINE MIR -59 203 114 184 324 162 50 chr1 93668748 93668970 -148995383 - L3 LINE CR1 -1072 505 259 753 239 119 4 chr1 93669179 93669405 -148994948 - MIR SINE MIR 0 262 11 264 269 172 8 chr1 93669477 93669611 -148994742 - L2 LINE L2 -5 3308 3153 322 264 143 48 chr1 93669720 93669909 -148994444 + MIR SINE MIR 3 209 -53 354 317 58 8 chr1 93670098 93670218 -148994135 + MIR SINE MIR 21 146 -62 2086 129 10 3 chr1 93670671 93670974 -148993379 + AluSx SINE Alu 1 305 -7 265 341 66 33 chr1 93671014 93671196 -148993157 - L3 LINE CR1 -216 1361 1174 279 0 0 0 chr1 93671415 93671446 -148992907 + (CA)n Simple_repeat Simple_repeat 1 31 0 185 128 0 26 chr1 93671909 93671948 -148992405 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 982 283 12 0 chr1 93672128 93672372 -148991981 + MIR SINE MIR 2 248 -14 304 251 109 38 chr1 93672979 93673162 -148991191 - L1MCa LINE L1 -3961 2465 2270 439 272 83 24 chr1 93673482 93673651 -148990702 + MER5A DNA MER1_type 1 179 -10 462 339 58 16 chr1 93674123 93674365 -148989988 - MIR SINE MIR -8 254 3 918 188 88 6 chr1 93674823 93675004 -148989349 + MER105 DNA DNA 2 197 -7 855 167 84 62 chr1 93675007 93675234 -148989119 - MER112 DNA MER1_type 0 260 29 283 350 31 25 chr1 93675663 93675823 -148988530 + MER5A DNA MER1_type 29 189 0 332 300 184 26 chr1 93675831 93676211 -148988142 - L2 LINE L2 -672 2642 2203 394 308 39 0 chr1 93678513 93678643 -148985710 - MER117 DNA MER1_type -60 137 3 405 302 177 19 chr1 93678643 93678858 -148985495 + MIR SINE MIR 10 258 -4 325 300 64 21 chr1 93678994 93679134 -148985219 + L2 LINE L2 3125 3270 -2 204 385 48 6 chr1 93679131 93679297 -148985056 + MIR3 SINE MIR 36 208 0 * 246 238 24 60 chr1 93679473 93679557 -148984796 - L2 LINE L2 -8 3264 3184 226 73 49 0 chr1 93680308 93680349 -148984004 + (TA)n Simple_repeat Simple_repeat 1 43 0 343 225 116 51 chr1 93680682 93680820 -148983533 + L1ME4a LINE L1 5773 5919 -202 280 313 42 10 chr1 93683058 93683154 -148981199 - L2 LINE L2 -8 3264 3166 184 279 70 58 chr1 93683141 93683227 -148981126 + L2 LINE L2 2966 3052 -261 * 252 0 0 0 chr1 93683310 93683338 -148981015 + (T)n Simple_repeat Simple_repeat 1 28 0 363 289 17 43 chr1 93683419 93683580 -148980773 - MER5A DNA MER1_type -20 158 1 258 385 50 39 chr1 93684574 93684834 -148979519 + L2 LINE L2 2985 3247 -25 958 203 6 0 chr1 93685467 93685625 -148978728 + FRAM SINE Alu 1 159 -7 226 178 11 67 chr1 93686757 93686847 -148977506 + L1MCa LINE L1 1983 2067 -4359 390 261 126 0 chr1 93687483 93687602 -148976751 + MIR SINE MIR 72 205 -57 830 243 20 49 chr1 93687714 93687961 -148976392 + MIR SINE MIR 6 245 -17 344 383 14 21 chr1 93688277 93688418 -148975935 + L2 LINE L2 3133 3272 0 1716 295 78 70 chr1 93688871 93690082 -148974271 - L3 LINE CR1 0 1577 357 243 0 0 0 chr1 93690132 93690159 -148974194 + (T)n Simple_repeat Simple_repeat 1 27 0 2018 158 0 3 chr1 93690180 93690483 -148973870 + AluJb SINE Alu 1 302 -10 192 212 0 0 chr1 93690876 93690909 -148973444 - MIR SINE MIR -62 146 114 486 191 18 9 chr1 93690977 93691087 -148973266 - L1MA6 LINE L1 0 6300 6190 2145 115 10 3 chr1 93691151 93691446 -148972907 - AluSg SINE Alu -13 297 1 573 328 88 49 chr1 93692535 93693069 -148971284 + L2 LINE L2 2407 2961 -353 399 235 67 17 chr1 93693153 93693272 -148971081 - MIR SINE MIR -23 239 115 1598 185 31 3 chr1 93693517 93693803 -148970550 + AluJo SINE Alu 1 294 -18 216 0 0 0 chr1 93693807 93693831 -148970522 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 476 304 191 0 chr1 93693847 93694041 -148970312 + MIR SINE MIR 2 232 -30 1638 165 14 11 chr1 93694065 93694350 -148970003 - AluJo SINE Alu -26 286 1 312 316 15 73 chr1 93696145 93696351 -148968002 + MLT1K LTR MaLR 379 572 -16 959 229 127 36 chr1 93697912 93698297 -148966056 + L2 LINE L2 2894 3313 0 335 289 140 39 chr1 93698496 93698852 -148965501 + L1ME4a LINE L1 5494 5885 -236 199 290 11 75 chr1 93699224 93699317 -148965036 + MIR SINE MIR 105 191 -71 264 245 96 11 chr1 93699404 93699498 -148964855 - MIR SINE MIR -51 211 110 2544 72 3 0 chr1 93703219 93703526 -148960827 + AluSc SINE Alu 1 308 -1 758 182 88 22 chr1 93704056 93704237 -148960116 + MER45 DNA AcHobo 1 193 -847 488 161 11 21 chr1 93704220 93704313 -148960040 + MER45 DNA AcHobo 1448 1539 -42 * 1512 161 3 96 chr1 93704400 93704735 -148959618 + AluJb SINE Alu 1 304 -8 350 221 255 7 chr1 93705146 93705291 -148959062 + MIR SINE MIR 65 245 -17 520 280 161 85 chr1 93705517 93705939 -148958414 - L2 LINE L2 -6 3266 2813 1967 95 9 98 chr1 93706176 93706503 -148957850 - AluSg SINE Alu -12 298 1 223 242 0 0 chr1 93707066 93707099 -148957254 + A-rich Low_complexity Low_complexity 1 36 -26 946 144 0 0 chr1 93707099 93707231 -148957122 + FLAM_C SINE Alu 2 133 0 223 242 0 0 chr1 93707231 93707259 -148957094 + A-rich Low_complexity Low_complexity 35 62 0 190 244 0 22 chr1 93708769 93708814 -148955539 + L2 LINE L2 3216 3259 -13 983 258 20 20 chr1 93711378 93711626 -148952727 - MIR SINE MIR 0 262 15 661 263 176 0 chr1 93711868 93712073 -148952280 + MIR SINE MIR 20 260 -2 230 228 43 43 chr1 93712147 93712239 -148952114 + MIR SINE MIR 165 256 -6 2022 124 6 22 chr1 93712324 93712638 -148951715 + AluSx SINE Alu 1 309 -3 263 241 218 23 chr1 93712712 93712799 -148951554 + MIR SINE MIR 34 137 -71 398 391 92 28 chr1 93712850 93713208 -148951145 - L2 LINE L2 -51 3221 2841 641 263 168 0 chr1 93713633 93713842 -148950511 + MER112 DNA MER1_type 8 251 -9 254 242 32 0 chr1 93714397 93714459 -148949894 - L3 LINE CR1 -10 1567 1504 2310 103 7 0 chr1 93714859 93715161 -148949192 - AluSx SINE Alu -6 306 3 369 154 0 15 chr1 93716332 93716397 -148947956 + FAM SINE Alu 89 152 -23 * 1298 174 116 48 chr1 93716393 93716704 -148947649 - MER1B DNA MER1_type -7 332 1 212 262 16 49 chr1 93716769 93716830 -148947523 - MER5A DNA MER1_type -76 113 55 201 39 0 0 chr1 93716834 93716860 -148947493 + (CTG)n Simple_repeat Simple_repeat 1 26 0 1770 171 13 3 chr1 93717402 93717711 -148946642 + AluJo SINE Alu 1 312 0 265 271 78 47 chr1 93717865 93718123 -148946230 - L1M4 LINE L1 -852 5294 5029 7808 150 19 13 chr1 93718317 93718665 -148945688 + L1PB1 LINE L1 3407 3751 -2400 2219 139 51 20 chr1 93718665 93719018 -148945335 - THE1B LTR MaLR 0 364 1 12104 84 8 0 chr1 93719018 93720585 -148943768 - THE1B-int LTR MaLR 0 1580 1 2080 126 46 52 chr1 93720585 93720661 -148943692 - THE1B LTR MaLR 0 364 289 2129 118 16 26 chr1 93720661 93720967 -148943386 + AluSq SINE Alu 1 303 -10 2080 126 46 52 chr1 93720967 93721256 -148943097 - THE1B LTR MaLR -75 289 1 7808 150 19 13 chr1 93721256 93723062 -148941291 + L1PB1 LINE L1 3751 5593 -558 1797 151 43 33 chr1 93723062 93723366 -148940987 - AluSx SINE Alu -5 307 1 7808 150 19 13 chr1 93723366 93723929 -148940424 + L1PB1 LINE L1 5593 6151 0 2159 105 4 0 chr1 93724002 93724306 -148940047 + AluSg SINE Alu 5 309 0 2128 120 0 7 chr1 93725466 93725793 -148938560 - AluSx SINE Alu 0 326 2 770 251 43 25 chr1 93726112 93726199 -148938154 - MIR SINE MIR -21 241 157 1276 135 43 26 chr1 93726199 93726429 -148937924 - MER46A DNA MER2_type -1 235 2 770 251 43 25 chr1 93726429 93726576 -148937777 - MIR SINE MIR -105 157 3 1607 283 26 96 chr1 93726984 93727051 -148937302 + L1M2c LINE L1 1 71 -7138 207 0 0 0 chr1 93727051 93727074 -148937279 + (CA)n Simple_repeat Simple_repeat 1 23 0 1607 283 26 96 chr1 93727074 93727728 -148936625 + L1M2c LINE L1 71 1055 -6154 3226 198 25 35 chr1 93727959 93728594 -148935759 + L1M2c LINE L1 1736 2376 -4833 1862 156 16 3 chr1 93728594 93728901 -148935452 + AluSx SINE Alu 1 311 -1 3226 198 25 35 chr1 93728901 93729099 -148935254 + L1M2c LINE L1 2376 2574 -4635 2420 75 0 23 chr1 93729099 93729407 -148934946 + AluY SINE Alu 1 301 -10 3226 198 25 35 chr1 93729407 93729914 -148934439 + L1M2c LINE L1 2574 3038 -4171 2376 60 0 0 chr1 93730169 93730483 -148933870 - AluY SINE Alu 0 314 1 969 167 0 6 chr1 93731869 93732037 -148932316 + L1PA16 LINE L1 5993 6159 -7 30 0 0 0 chr1 93732621 93732651 -148931702 + AT_rich Low_complexity Low_complexity 1 30 0 3027 161 56 78 chr1 93732877 93733647 -148930706 - L1MB8 LINE L1 -9 6169 5417 2202 197 11 23 chr1 93733638 93734110 -148930243 - L1MB8 LINE L1 -1026 5120 4655 * 1644 166 3 6 chr1 93734121 93734435 -148929918 - L1M4 LINE L1 -743 5403 5091 1625 171 8 0 chr1 93734531 93734789 -148929564 - AluSx SINE Alu -52 260 1 4446 207 62 23 chr1 93734789 93735736 -148928617 - L1M4 LINE L1 -838 5308 4304 2319 108 3 0 chr1 93735736 93736033 -148928320 - AluSx SINE Alu -14 298 1 4446 207 62 23 chr1 93736033 93736288 -148928065 - L1M4 LINE L1 -1842 4304 4060 398 322 0 8 chr1 93736634 93736755 -148927598 - MARNA DNA Mariner -89 497 378 483 234 61 126 chr1 93736756 93737034 -148927319 + MIR SINE MIR 2 261 -1 566 246 27 38 chr1 93737035 93737218 -148927135 + MIR SINE MIR 82 262 0 1532 171 94 16 chr1 93737359 93737668 -148926685 - MER1B DNA MER1_type -6 333 1 204 283 17 0 chr1 93738568 93738628 -148925725 - L2 LINE L2 -5 3308 3248 191 303 101 34 chr1 93739588 93739677 -148924676 + MIR3 SINE MIR 82 176 -32 1604 169 49 0 chr1 93739697 93740005 -148924348 + L1MB7 LINE L1 5734 6056 -128 247 353 49 57 chr1 93740271 93740515 -148923838 - L2 LINE L2 -1 3271 3030 1952 221 128 1 chr1 93740631 93741412 -148922941 + L1ME1 LINE L1 4969 5826 -340 3548 144 58 38 chr1 93741562 93741744 -148922609 + MER50 LTR ERV1 1 178 -556 2383 65 3 13 chr1 93741744 93742051 -148922302 + AluY SINE Alu 1 304 -7 3548 144 58 38 chr1 93742051 93742418 -148921935 + MER50 LTR ERV1 178 567 -167 2375 98 10 0 chr1 93742418 93742724 -148921629 - AluSg SINE Alu -1 309 1 3548 144 58 38 chr1 93742724 93742824 -148921529 + MER50 LTR ERV1 567 664 -70 1996 146 3 0 chr1 93743276 93743570 -148920783 - AluSx SINE Alu -17 295 1 515 244 128 55 chr1 93743860 93744134 -148920219 + MLT1H LTR MaLR 248 541 -8 249 290 86 0 chr1 93744243 93744336 -148920017 - L1ME LINE L1 -465 5656 5556 1785 189 71 53 chr1 93745355 93745728 -148918625 - MLT1C LTR MaLR 0 467 83 1807 155 3 43 chr1 93745728 93746032 -148918321 - AluJo SINE Alu -15 297 6 1785 189 71 53 chr1 93746032 93746108 -148918245 - MLT1C LTR MaLR -384 83 10 192 298 0 0 chr1 93746120 93746167 -148918186 + MIR SINE MIR 56 102 -160 498 261 96 60 chr1 93746851 93747071 -148917282 - MIR SINE MIR 0 262 31 2957 6 0 6 chr1 93747071 93747389 -148916964 - AluYb8 SINE Alu -2 316 1 498 261 96 60 chr1 93747389 93747417 -148916936 - MIR SINE MIR -231 31 5 421 100 0 0 chr1 93747666 93747726 -148916627 - AluJb SINE Alu -19 293 234 8980 156 62 49 chr1 93747730 93749463 -148914890 + MER52A LTR ERV1 1 1755 0 1720 124 0 4 chr1 93749464 93749697 -148914656 - AluJb SINE Alu -80 232 1 241 264 184 11 chr1 93749850 93749937 -148914416 + MER5B DNA MER1_type 1 102 -76 898 180 73 144 chr1 93750263 93750590 -148913763 - MLT1A1 LTR MaLR -61 304 1 26 50 0 0 chr1 93750594 93750634 -148913719 + AT_rich Low_complexity Low_complexity 1 40 0 2410 148 14 49 chr1 93750685 93751173 -148913180 - L1MB7 LINE L1 -8 6176 5706 469 204 23 0 chr1 93751293 93751381 -148912972 - L1MB7 LINE L1 -503 5675 5586 234 250 0 0 chr1 93751389 93751441 -148912912 + MER5B DNA MER1_type 127 178 0 261 351 117 19 chr1 93751532 93751686 -148912667 + L3 LINE CR1 509 677 -900 29 21 0 21 chr1 93751921 93751950 -148912403 + AT_rich Low_complexity Low_complexity 1 30 -16 791 101 18 0 chr1 93751950 93752059 -148912294 - L1PA10 LINE L1 -4 6164 6054 29 21 0 21 chr1 93752059 93752076 -148912277 + AT_rich Low_complexity Low_complexity 30 46 0 216 0 0 0 chr1 93752095 93752119 -148912234 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 211 204 56 19 chr1 93752130 93752184 -148912169 + L3 LINE CR1 1407 1462 -115 297 0 0 0 chr1 93752204 93752237 -148912116 + (TG)n Simple_repeat Simple_repeat 2 34 0 1449 143 155 8 chr1 93752282 93752533 -148911820 + AluJo SINE Alu 1 288 -14 1880 161 0 7 chr1 93752572 93752871 -148911482 - AluJo SINE Alu -15 297 1 347 206 75 88 chr1 93753090 93753250 -148911103 + L2 LINE L2 3154 3311 -2 2284 104 10 7 chr1 93753265 93753573 -148910780 - AluSq SINE Alu -4 309 1 229 272 11 43 chr1 93753827 93753919 -148910434 + MIR SINE MIR 45 133 -129 435 270 28 39 chr1 93755228 93755406 -148908947 + L2 LINE L2 3137 3312 -1 323 314 19 13 chr1 93755407 93755563 -148908790 - L2 LINE L2 -1318 1996 1840 2036 136 0 22 chr1 93756203 93756520 -148907833 + AluSx SINE Alu 1 310 -2 813 277 19 0 chr1 93757029 93757227 -148907126 - LTR16C LTR ERVL 0 491 290 551 211 16 7 chr1 93757227 93757356 -148906997 + MER33 DNA MER1_type 1 112 -78 360 0 0 0 chr1 93757359 93757399 -148906954 + (TA)n Simple_repeat Simple_repeat 1 40 0 475 124 165 0 chr1 93757829 93757926 -148906427 + L1MC2 LINE L1 6221 6333 -11 1828 165 6 22 chr1 93758959 93759275 -148905078 + AluJb SINE Alu 1 311 -1 327 353 19 6 chr1 93760771 93760857 -148903496 - MIR3 SINE MIR -1 207 117 2413 100 6 0 chr1 93760857 93761168 -148903185 + AluSq SINE Alu 1 313 0 327 353 19 6 chr1 93761168 93761237 -148903116 - MIR3 SINE MIR -91 117 50 1362 203 113 28 chr1 93761299 93761663 -148902690 + MSTD LTR MaLR 2 396 0 223 307 80 11 chr1 93761975 93762063 -148902290 + L2 LINE L2 3151 3244 -28 1736 173 0 4 chr1 93762636 93762913 -148901440 - AluJo SINE Alu -6 306 31 450 213 275 0 chr1 93764011 93764171 -148900182 + MIR SINE MIR 58 261 -1 194 335 98 55 chr1 93764249 93764413 -148899940 - L2 LINE L2 -1 3271 3101 1601 173 20 41 chr1 93764615 93764910 -148899443 - AluJo SINE Alu -22 290 2 456 342 33 8 chr1 93764999 93765239 -148899114 + MIR SINE MIR 2 247 -15 360 284 0 21 chr1 93765401 93765496 -148898857 + L2 LINE L2 2992 3084 -188 447 297 175 24 chr1 93765529 93765980 -148898373 + L2 LINE L2 1792 2310 -1004 502 305 67 14 chr1 93766000 93766223 -148898130 + L2 LINE L2 2475 2709 -605 280 311 206 11 chr1 93766310 93766577 -148897776 + L2 LINE L2 2855 3173 -140 328 294 63 0 chr1 93767369 93767495 -148896858 + MIR SINE MIR 105 238 -24 280 278 120 15 chr1 93767560 93767693 -148896660 + L2 LINE L2 3161 3307 -6 207 188 0 0 chr1 93769373 93769421 -148894932 + (CA)n Simple_repeat Simple_repeat 1 48 0 209 242 211 11 chr1 93769558 93769653 -148894700 + MIR SINE MIR 131 244 -18 1678 119 78 11 chr1 93769660 93769928 -148894425 - AluJb SINE Alu -16 296 11 620 216 0 8 chr1 93770450 93770575 -148893778 - L2 LINE L2 0 3313 3190 1202 107 0 6 chr1 93770626 93770795 -148893558 - AluSg/x SINE Alu -10 302 135 25 0 0 0 chr1 93770803 93770828 -148893525 + AT_rich Low_complexity Low_complexity 1 25 0 2221 119 0 0 chr1 93770828 93771121 -148893232 - AluSx SINE Alu -19 293 1 182 256 54 155 chr1 93771126 93771384 -148892969 - L2 LINE L2 -151 3162 2931 698 228 86 5 chr1 93771435 93771632 -148892721 - L2 LINE L2 -547 2767 2555 327 149 52 184 chr1 93771659 93771780 -148892573 - L2 LINE L2 -598 2716 2623 2840 115 159 37 chr1 93771780 93772327 -148892026 - LTR18B LTR ERVL 0 614 1 327 149 52 184 chr1 93772327 93772379 -148891974 - L2 LINE L2 -691 2623 2566 228 86 0 0 chr1 93772823 93772858 -148891495 + (TA)n Simple_repeat Simple_repeat 1 35 0 865 149 20 31 chr1 93772878 93773073 -148891280 + Charlie5 DNA MER1_type 2432 2624 0 2174 69 0 0 chr1 93774251 93774511 -148889842 - AluY SINE Alu -15 296 37 2526 77 3 0 chr1 93775887 93776187 -148888166 - AluSp SINE Alu -12 301 1 2204 113 3 0 chr1 93776187 93776480 -148887873 - AluSq SINE Alu -19 294 1 488 297 139 36 chr1 93776491 93776821 -148887532 - L2 LINE L2 -21 3292 2929 518 234 81 8 chr1 93776953 93777077 -148887276 - FLAM_A SINE Alu 0 133 1 244 314 45 26 chr1 93779477 93779633 -148884720 - MIR SINE MIR -13 249 91 1690 186 13 16 chr1 93779715 93780021 -148884332 + AluJo SINE Alu 5 309 -3 963 242 72 16 chr1 93780320 93780683 -148883670 - L1MC5 LINE L1 -58 7903 7521 2669 207 48 7 chr1 93780868 93781458 -148882895 + L1MC4a LINE L1 7194 7807 -1 384 22 0 0 chr1 93782547 93782592 -148881761 + (GA)n Simple_repeat Simple_repeat 1 45 0 268 165 0 132 chr1 93782761 93782852 -148881501 - L2 LINE L2 0 3313 3235 844 304 35 21 chr1 93783344 93783683 -148880670 - MLT1J LTR MaLR -167 344 1 243 230 108 0 chr1 93784278 93784352 -148880001 - MIR SINE MIR -74 188 107 410 241 0 27 chr1 93784353 93784465 -148879888 + MIR SINE MIR 154 262 0 201 196 98 20 chr1 93784816 93784867 -148879486 - MIR SINE MIR -180 82 28 2102 109 3 7 chr1 93785050 93785355 -148878998 - AluSc SINE Alu 0 304 1 349 323 75 15 chr1 93785975 93786108 -148878245 - L2 LINE L2 -10 3262 3122 1763 128 4 0 chr1 93786121 93786363 -148877990 - AluSx SINE Alu -69 243 1 204 292 111 49 chr1 93786427 93786571 -148877782 - L2 LINE L2 -15 3257 3105 1220 197 171 79 chr1 93786603 93787070 -148877283 + MLT2B1 LTR ERVL 11 520 0 414 231 0 0 chr1 93787208 93787325 -148877028 + C-rich Low_complexity Low_complexity 1 117 0 198 307 27 0 chr1 93788220 93788295 -148876058 + MIR SINE MIR 50 126 -136 5249 179 52 31 chr1 93789004 93789966 -148874387 - L1MB8 LINE L1 -9 6169 5228 1033 145 0 13 chr1 93789966 93790125 -148874228 - FRAM SINE Alu -7 159 3 5249 179 52 31 chr1 93790125 93791022 -148873331 - L1MB8 LINE L1 -950 5228 4271 2087 133 3 3 chr1 93791022 93791322 -148873031 - AluSx SINE Alu -12 300 1 5249 179 52 31 chr1 93791322 93791430 -148872923 - L1MB8 LINE L1 -1907 4271 4167 2675 255 74 28 chr1 93791400 93792203 -148872150 - L1M4b LINE L1 -5954 905 60 * 4537 67 5 0 chr1 93792203 93792773 -148871580 - L1PA7 LINE L1 -1 6153 5581 2675 255 74 28 chr1 93792773 93792816 -148871537 - L1M4b LINE L1 -6799 60 20 1801 199 58 5 chr1 93792853 93793229 -148871124 + MSTD LTR MaLR 1 396 0 185 295 33 0 chr1 93793398 93793459 -148870894 - L3 LINE CR1 -87 1490 1428 23 0 0 0 chr1 93793879 93793902 -148870451 + AT_rich Low_complexity Low_complexity 1 23 0 505 241 104 38 chr1 93793976 93794188 -148870165 + LTR33 LTR ERVL 1 226 -295 266 268 167 7 chr1 93794218 93794356 -148869997 + LTR33 LTR ERVL 323 482 -39 1323 165 45 39 chr1 93794871 93795180 -148869173 + L1MA9 LINE L1 5997 6307 -5 389 232 143 9 chr1 93796270 93796382 -148867971 + L2 LINE L2 3134 3260 -12 360 247 164 45 chr1 93797298 93797590 -148866763 + L1ME4a LINE L1 5795 6121 0 213 231 0 19 chr1 93798857 93798909 -148865444 + GA-rich Low_complexity Low_complexity 3 53 0 1731 178 0 34 chr1 93801478 93801799 -148862554 - AluJb SINE Alu -2 310 1 590 306 44 16 chr1 93802107 93802355 -148861998 + MIR SINE MIR 8 262 0 2026 134 31 0 chr1 93803270 93803561 -148860792 + AluJo SINE Alu 1 300 -12 1904 165 3 13 chr1 93803562 93803905 -148860448 + AluJb SINE Alu 1 312 0 249 294 0 0 chr1 93804904 93804955 -148859398 + (CG)n Simple_repeat Simple_repeat 1 51 0 280 323 44 38 chr1 93805024 93805182 -148859171 - MER5A DNA MER1_type -23 166 8 229 301 97 29 chr1 93805853 93805956 -148858397 - L2 LINE L2 -46 3226 3117 347 241 55 55 chr1 93806001 93806146 -148858207 - MIR3 SINE MIR -45 163 19 990 165 128 0 chr1 93806693 93806881 -148857472 + AluJb SINE Alu 56 267 -45 635 253 4 86 chr1 93807176 93807433 -148856920 + MIR SINE MIR 21 256 -6 195 100 0 0 chr1 93810984 93811014 -148853339 + (TA)n Simple_repeat Simple_repeat 1 30 0 12222 183 72 54 chr1 93811316 93813570 -148850783 + L1M2 LINE L1 3 2214 -4634 2002 147 32 32 chr1 93813570 93813945 -148850408 + THE1C LTR MaLR 1 375 0 12222 183 72 54 chr1 93813945 93813996 -148850357 + L1M2 LINE L1 2214 2263 -4585 1946 148 156 3 chr1 93813996 93814367 -148849986 + MSTA LTR MaLR 1 428 0 12222 183 72 54 chr1 93814367 93814927 -148849426 + L1M2 LINE L1 2263 2921 -3927 4043 180 39 49 chr1 93814961 93815250 -148849103 + L1MDa LINE L1 2597 2888 -3652 1889 161 0 14 chr1 93815250 93815591 -148848762 + AluJb SINE Alu 1 337 0 4043 180 39 49 chr1 93815591 93816393 -148847960 + L1MDa LINE L1 2888 3674 -2866 1786 111 39 33 chr1 93816387 93816694 -148847659 + L1MDa LINE L1 3996 4304 -2236 * 369 185 25 0 chr1 93816946 93817027 -148847326 + L1ME1 LINE L1 6080 6162 -4 2219 98 31 0 chr1 93817031 93817317 -148847036 - AluSg SINE Alu -15 295 1 290 275 0 55 chr1 93818195 93818304 -148846049 + MER5A DNA MER1_type 86 188 -1 2137 115 7 26 chr1 93818333 93818638 -148845715 + AluSx SINE Alu 1 299 -13 193 304 50 55 chr1 93820159 93820340 -148844013 + L2 LINE L2 2560 2739 -575 212 285 15 108 chr1 93820712 93820842 -148843511 + L2 LINE L2 3139 3256 -16 2498 62 7 0 chr1 93821108 93821416 -148842937 + AluY SINE Alu 1 310 -1 234 0 0 0 chr1 93821962 93821988 -148842365 + (TG)n Simple_repeat Simple_repeat 2 27 0 628 244 28 31 chr1 93822366 93822542 -148841811 + MER5B DNA MER1_type 1 188 -1 190 253 93 13 chr1 93822580 93822655 -148841698 - L3 LINE CR1 -11 1566 1486 182 36 0 36 chr1 93823913 93823941 -148840412 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 328 127 0 28 chr1 93824117 93824188 -148840165 + (TCCC)n Simple_repeat Simple_repeat 2 70 0 293 278 16 32 chr1 93824676 93824802 -148839551 - L1ME3A LINE L1 -175 5995 5872 2076 102 4 0 chr1 93825166 93825440 -148838913 + AluSx SINE Alu 9 283 -29 204 97 0 0 chr1 93825440 93825471 -148838882 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 7524 37 1 0 chr1 93826341 93827352 -148837001 + L1PA5 LINE L1 5143 6154 0 211 354 30 55 chr1 93828129 93828293 -148836060 + L2 LINE L2 2928 3087 -185 329 251 139 28 chr1 93829088 93829207 -148835146 + MIR SINE MIR 38 167 -62 316 318 149 0 chr1 93829213 93829320 -148835033 - L2 LINE L2 0 3272 3150 245 194 104 15 chr1 93829419 93829486 -148834867 + MIR SINE MIR 79 151 -57 187 298 0 0 chr1 93830517 93830564 -148833789 + L2 LINE L2 3201 3247 -25 958 120 0 0 chr1 93830637 93830770 -148833583 - FLAM_C SINE Alu 0 133 1 1471 117 13 0 chr1 93831332 93831562 -148832791 + L1MB3 LINE L1 5943 6175 -8 4044 154 99 16 chr1 93831650 93832447 -148831906 + MER6 DNA MER2_type 2 864 -1 23 0 0 0 chr1 93833270 93833293 -148831060 + AT_rich Low_complexity Low_complexity 1 23 0 331 296 96 49 chr1 93833777 93834203 -148830150 - L1MC5 LINE L1 -516 7445 7000 765 267 109 14 chr1 93834263 93835194 -148829159 + L1ME3A LINE L1 2888 3924 -2222 639 279 30 0 chr1 93835193 93835430 -148828923 + L1ME3A LINE L1 5612 5855 -315 * 230 279 60 65 chr1 93835588 93835789 -148828564 + L1ME3A LINE L1 5963 6162 -8 523 142 47 9 chr1 93836036 93836142 -148828211 + L1MB4 LINE L1 6069 6178 -2 230 264 47 57 chr1 93836891 93836997 -148827356 - MER91C DNA MER1_type -29 111 7 266 265 162 20 chr1 93837727 93837931 -148826422 + L1ME4a LINE L1 5883 6115 -6 2191 124 10 0 chr1 93837942 93838249 -148826104 + AluSx SINE Alu 1 310 -2 200 184 0 0 chr1 93838516 93838554 -148825799 + (CA)n Simple_repeat Simple_repeat 1 38 0 370 254 46 39 chr1 93841361 93841491 -148822862 + MIR SINE MIR 59 189 -73 204 273 0 0 chr1 93842023 93842067 -148822286 + CT-rich Low_complexity Low_complexity 4 47 0 655 234 63 24 chr1 93842160 93842365 -148821988 + MIR SINE MIR 50 262 0 362 212 0 61 chr1 93843618 93843717 -148820636 - MIR SINE MIR -76 186 94 2236 98 14 0 chr1 93844123 93844418 -148819935 - AluSq SINE Alu -14 299 1 694 271 92 8 chr1 93844590 93844830 -148819523 - MIR SINE MIR -2 260 1 1340 206 80 19 chr1 93845274 93845677 -148818676 + MLT1E1 LTR MaLR 1 401 -253 395 233 10 10 chr1 93847077 93847180 -148817173 - MIR SINE MIR 0 262 160 452 216 182 0 chr1 93847381 93847529 -148816824 + MLT1L LTR MaLR 427 601 -14 1380 154 5 0 chr1 93848627 93848848 -148815505 - AluJb SINE Alu -4 308 87 180 240 40 0 chr1 93848861 93848911 -148815442 + L2 LINE L2 3216 3267 -5 944 319 103 17 chr1 93849179 93849596 -148814757 - L2 LINE L2 -2 3311 2859 1927 144 56 0 chr1 93849596 93849937 -148814416 + MLT1B LTR MaLR 1 360 -30 1154 305 66 25 chr1 93849994 93850509 -148813844 - L2 LINE L2 -509 2805 2270 902 209 17 0 chr1 93850919 93851091 -148813262 + FAM SINE Alu 1 175 0 1837 145 25 90 chr1 93852903 93853304 -148811049 + THE1C LTR MaLR 1 375 0 194 326 242 0 chr1 93856643 93856775 -148807578 - MIR3 SINE MIR -3 205 42 27 49 0 0 chr1 93856884 93856925 -148807428 + AT_rich Low_complexity Low_complexity 1 41 0 2057 154 0 6 chr1 93857972 93858283 -148806070 - AluJb SINE Alu -3 309 1 384 269 141 13 chr1 93858698 93858847 -148805506 - MIR3 SINE MIR -8 200 33 196 306 0 24 chr1 93858935 93859020 -148805333 - MIR SINE MIR -48 214 132 233 186 17 34 chr1 93859115 93859174 -148805179 - MIR SINE MIR -119 143 86 459 284 167 25 chr1 93859276 93859600 -148804753 + L2 LINE L2 2351 2720 -594 250 241 81 11 chr1 93859685 93859772 -148804581 - MIR SINE MIR -70 192 100 891 259 50 16 chr1 93860195 93860516 -148803837 + MER46C DNA MER2_type 7 338 0 2220 80 35 3 chr1 93860529 93860818 -148803535 + AluSq SINE Alu 1 298 -15 303 261 9 73 chr1 93860830 93860923 -148803430 - L1MCa LINE L1 -4792 1634 1537 1378 108 14 0 chr1 93860923 93861136 -148803217 - L1PB2 LINE L1 0 6151 5936 303 261 9 73 chr1 93861136 93861242 -148803111 - L1MCa LINE L1 -4889 1537 1448 13622 125 54 29 chr1 93861242 93863600 -148800753 + Tigger1 DNA MER2_type 1 2418 0 303 261 9 73 chr1 93863600 93863617 -148800736 - L1MCa LINE L1 -4978 1448 1431 1196 270 56 27 chr1 93863641 93864155 -148800198 - L1MCa LINE L1 -5768 839 311 310 248 19 57 chr1 93865185 93865290 -148799063 + MIR SINE MIR 4 104 -158 2054 158 31 13 chr1 93865293 93865685 -148798668 - MSTB1 LTR MaLR 0 432 34 8339 186 22 7 chr1 93865707 93867329 -148797024 - MSTB1-int LTR MaLR -6 1645 1 2442 137 22 5 chr1 93867333 93867743 -148796610 - MSTB1 LTR MaLR -15 417 1 538 217 53 26 chr1 93867743 93867895 -148796458 + MIR SINE MIR 103 258 -4 395 300 86 0 chr1 93868486 93868626 -148795727 + MIR SINE MIR 5 156 -106 962 119 15 0 chr1 93868634 93868768 -148795585 + AluJo SINE Alu 1 136 -176 336 83 0 67 chr1 93868770 93868859 -148795494 + Alu SINE Alu 245 302 0 265 217 120 22 chr1 93868867 93868959 -148795394 + MIR SINE MIR 160 260 -2 192 328 0 16 chr1 93869047 93869111 -148795242 - L2 LINE L2 0 3272 3210 291 258 31 94 chr1 93869157 93869285 -148795068 + L2 LINE L2 3153 3272 0 417 81 80 4 chr1 93869959 93870031 -148794322 - THE1C LTR MaLR -280 75 1 332 271 17 34 chr1 93870309 93870427 -148793926 + MER57-int LTR ERV1 2439 2554 -3777 1071 167 0 0 chr1 93870895 93871057 -148793296 + AluJo SINE Alu 137 298 -4 573 13 13 0 chr1 93871575 93871653 -148792700 - L1PB1 LINE L1 -2 6149 6071 1631 162 27 85 chr1 93871684 93872049 -148792304 - MLT1B LTR MaLR -46 344 1 351 223 0 32 chr1 93872053 93872087 -148792266 + HERVL40 LTR ERVL 2710 2744 -2786 2431 84 3 0 chr1 93872087 93872396 -148791957 + AluSg SINE Alu 1 310 0 351 223 0 32 chr1 93872396 93872455 -148791898 + HERVL40 LTR ERVL 2744 2800 -2730 231 65 0 0 chr1 93872479 93872510 -148791843 + LTR40a LTR ERVL 488 518 -1 349 242 101 0 chr1 93872750 93872849 -148791504 - MIR SINE MIR -40 222 114 468 271 42 7 chr1 93872960 93873104 -148791249 + MER57-int LTR ERV1 841 989 -4134 652 283 115 4 chr1 93873104 93873330 -148791023 + MER34C LTR ERV1 157 407 -178 2350 200 104 85 chr1 93873331 93873669 -148790684 + MER57-int LTR ERV1 1198 1528 -4803 1318 199 155 37 chr1 93873669 93874076 -148790277 + MSTB2 LTR MaLR 1 455 -2 2350 200 104 85 chr1 93874076 93874969 -148789384 + MER57-int LTR ERV1 1528 2403 -3928 2328 104 3 0 chr1 93874969 93875276 -148789077 + AluSp SINE Alu 5 312 -1 2350 200 104 85 chr1 93875276 93875780 -148788573 + MER57-int LTR ERV1 2403 2896 -3435 2238 154 70 0 chr1 93875780 93876183 -148788170 - MSTB1 LTR MaLR 0 432 2 2350 200 104 85 chr1 93876183 93876327 -148788026 + MER57-int LTR ERV1 2896 3036 -3295 1834 174 0 7 chr1 93876327 93876626 -148787727 + AluJb SINE Alu 1 297 -15 2350 200 104 85 chr1 93876626 93877198 -148787155 + MER57-int LTR ERV1 3036 4935 -1396 637 176 37 22 chr1 93877197 93877333 -148787020 + MER57-int LTR ERV1 3687 3824 -1112 * 628 98 0 0 chr1 93877342 93877424 -148786929 + MSTB1 LTR MaLR 1 82 -344 1068 146 38 61 chr1 93877424 93877636 -148786717 + MSTB1 LTR MaLR 226 432 0 2375 205 108 63 chr1 93877636 93878649 -148785704 + MER57-int LTR ERV1 3362 4416 -520 1913 204 14 6 chr1 93878684 93879042 -148785311 + MER57-int LTR ERV1 6784 7144 -393 2307 152 36 72 chr1 93879042 93879569 -148784784 + LTR54 LTR ERV1 1 508 -2 1997 133 3 40 chr1 93879753 93880077 -148784276 - AluSx SINE Alu 0 312 1 1984 157 3 10 chr1 93881065 93881377 -148782976 - AluJb SINE Alu -2 310 1 1675 162 3 53 chr1 93881570 93881873 -148782480 - AluJo SINE Alu -22 290 3 2453 67 3 0 chr1 93882203 93882501 -148781852 + AluY SINE Alu 1 299 -12 252 293 19 9 chr1 93882725 93882831 -148781522 + L1MC4 LINE L1 6595 6701 -1341 250 270 67 0 chr1 93882803 93882892 -148781461 - L1MC4 LINE L1 -1339 6703 6609 * 458 273 91 16 chr1 93885563 93885750 -148778603 - MIR SINE MIR -2 260 60 882 159 79 5 chr1 93886147 93886336 -148778017 - L1MA8 LINE L1 -4 6287 6085 29 60 0 0 chr1 93886406 93886456 -148777897 + AT_rich Low_complexity Low_complexity 1 50 0 256 308 0 0 chr1 93887824 93887889 -148776464 + CT-rich Low_complexity Low_complexity 3 67 0 305 320 56 74 chr1 93887918 93888149 -148776204 - L1MC4a LINE L1 -1766 6042 5816 227 261 0 0 chr1 93888490 93888536 -148775817 - L2 LINE L2 -76 3196 3151 224 367 146 28 chr1 93888532 93888599 -148775754 + L2 LINE L2 2521 2579 -693 * 1522 116 31 5 chr1 93888599 93888823 -148775530 - MER30 DNA MER1_type 0 230 1 224 367 146 28 chr1 93888823 93889266 -148775087 + L2 LINE L2 2579 3091 -181 1945 153 0 0 chr1 93889573 93889868 -148774485 + AluJb SINE Alu 1 295 -17 2299 95 10 0 chr1 93889932 93890228 -148774125 + AluSp SINE Alu 1 299 -14 257 236 90 45 chr1 93891073 93891162 -148773191 + L2 LINE L2 3137 3229 -43 21 0 0 0 chr1 93891681 93891702 -148772651 + AT_rich Low_complexity Low_complexity 1 21 0 1700 192 0 0 chr1 93892293 93892585 -148771768 + AluJo SINE Alu 1 292 -20 201 185 154 46 chr1 93893567 93893632 -148770721 - MIR SINE MIR 0 262 191 568 247 79 79 chr1 93893667 93894175 -148770178 + L1 LINE L1 4755 5329 -817 508 260 64 64 chr1 93894352 93894580 -148769773 + L1ME3A LINE L1 5315 5541 -629 2266 104 0 7 chr1 93894580 93894889 -148769464 - AluSg SINE Alu -3 307 1 508 260 64 64 chr1 93894889 93895231 -148769122 + L1ME3A LINE L1 5541 5947 -223 1587 109 5 0 chr1 93895858 93896069 -148768284 - AluSq SINE Alu -101 212 1 1810 186 0 10 chr1 93896237 93896543 -148767810 - AluJb SINE Alu -7 305 3 241 244 221 47 chr1 93898702 93898788 -148765565 - MER91C DNA MER1_type -7 133 33 2145 119 0 3 chr1 93898842 93899135 -148765218 + AluSq SINE Alu 12 303 -10 1546 186 184 19 chr1 93899149 93899442 -148764911 - L1MC3 LINE L1 -1 7784 7541 180 0 0 0 chr1 93899442 93899462 -148764891 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1546 186 184 19 chr1 93899462 93899598 -148764755 - L1MC3 LINE L1 -244 7541 7284 * 4580 143 73 21 chr1 93899596 93900405 -148763948 - MSTA-int LTR MaLR -800 851 1 2783 120 29 0 chr1 93900405 93900821 -148763532 - MSTA LTR MaLR 0 428 1 5799 191 76 28 chr1 93900826 93902245 -148762108 - L1MC3 LINE L1 -745 5401 4754 1280 194 78 78 chr1 93902245 93902617 -148761736 + MLT1A2 LTR MaLR 1 372 -2 5799 191 76 28 chr1 93902617 93903914 -148760439 - L1MC3 LINE L1 -1392 4754 3520 27 0 0 0 chr1 93904316 93904343 -148760010 + AT_rich Low_complexity Low_complexity 1 27 0 376 289 42 49 chr1 93905322 93905464 -148758889 + MIR SINE MIR 3 143 -119 378 281 16 33 chr1 93905464 93905585 -148758768 - L2 LINE L2 0 3313 3195 416 274 38 0 chr1 93905597 93905703 -148758650 + MIR SINE MIR 139 248 -14 275 229 104 31 chr1 93905831 93905927 -148758426 + MIR SINE MIR 110 212 -50 2014 134 3 19 chr1 93906200 93906514 -148757839 + AluJo SINE Alu 1 309 -3 336 255 82 20 chr1 93906580 93906678 -148757675 - MIR3 SINE MIR -36 172 69 183 129 0 0 chr1 93907292 93907323 -148757030 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2798 88 0 3 chr1 93907785 93908149 -148756204 - THE1B LTR MaLR -1 363 1 6954 52 34 0 chr1 93908594 93909607 -148754746 - L1PA7 LINE L1 -3 6151 5125 9685 79 10 0 chr1 93909616 93910925 -148753428 - L1PA7 LINE L1 -1131 5015 3694 296 236 11 0 chr1 93911103 93911192 -148753161 + CT-rich Low_complexity Low_complexity 3 92 0 283 73 36 36 chr1 93912644 93912699 -148751654 + (CATA)n Simple_repeat Simple_repeat 2 56 0 26 74 0 0 chr1 93913540 93913594 -148750759 + AT_rich Low_complexity Low_complexity 1 54 0 326 262 163 79 chr1 93913722 93913992 -148750361 - L1M4 LINE L1 -1087 5059 4736 1665 142 91 7 chr1 93913992 93914266 -148750087 - AluSx SINE Alu -15 297 1 326 262 163 79 chr1 93914266 93914437 -148749916 - L1M4 LINE L1 -1410 4736 4581 24 85 0 0 chr1 93914448 93914507 -148749846 + AT_rich Low_complexity Low_complexity 1 59 0 697 101 37 9 chr1 93914750 93914859 -148749494 - HY1 scRNA scRNA 0 112 1 922 282 74 25 chr1 93914964 93915290 -148749063 - L2 LINE L2 0 3313 2972 1811 134 40 27 chr1 93915355 93915535 -148748818 - AluSx SINE Alu -10 302 115 207 0 0 0 chr1 93915535 93915558 -148748795 + (TG)n Simple_repeat Simple_repeat 2 24 0 1811 134 40 27 chr1 93915558 93915675 -148748678 - AluSx SINE Alu -197 115 1 22 0 0 0 chr1 93915798 93915820 -148748533 + AT_rich Low_complexity Low_complexity 1 22 0 754 228 18 66 chr1 93916496 93916797 -148747556 + MLT1F1 LTR MaLR 6 271 -284 2249 103 37 29 chr1 93916907 93917284 -148747069 + Tigger2a DNA MER2_type 2 381 -53 2666 133 20 11 chr1 93917468 93917920 -148746433 + L1PA15 LINE L1 5709 6164 -1 272 262 33 0 chr1 93918090 93918151 -148746202 + Tigger2a DNA MER2_type 382 444 0 683 271 13 0 chr1 93918165 93918320 -148746033 + MLT1F1 LTR MaLR 439 595 0 388 317 96 43 chr1 93918481 93918689 -148745664 + MIR SINE MIR 6 224 -38 2114 111 3 3 chr1 93920835 93921124 -148743229 + AluSc SINE Alu 1 289 -20 200 241 190 0 chr1 93921284 93921342 -148743011 - MIR SINE MIR -21 241 173 201 200 146 0 chr1 93921549 93921604 -148742749 - MIR SINE MIR -61 147 85 13857 52 8 0 chr1 93921607 93924077 -148740276 - L1PA5 LINE L1 -2 6152 3666 333 340 82 16 chr1 93924227 93924398 -148739955 - L2 LINE L2 -8 3264 3069 3654 82 0 0 chr1 93924398 93924839 -148739514 - MLT2A1 LTR ERVL -3 441 1 333 340 82 16 chr1 93924839 93924923 -148739430 - L2 LINE L2 -203 3069 2992 1507 199 36 0 chr1 93925194 93925475 -148738878 - AluJo SINE Alu -21 291 1 2337 129 35 24 chr1 93925697 93926068 -148738285 - THE1C LTR MaLR 0 375 1 1740 78 55 0 chr1 93927607 93927824 -148736529 - MER30 DNA MER1_type 0 230 2 278 333 222 24 chr1 93929741 93929867 -148734486 + L2 LINE L2 3121 3271 -1 212 304 70 35 chr1 93929840 93929955 -148734398 - MIR SINE MIR -84 178 60 * 474 273 134 33 chr1 93930957 93931150 -148733203 - MIR SINE MIR -20 242 30 189 0 0 0 chr1 93931903 93931924 -148732429 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 604 241 20 54 chr1 93931992 93932195 -148732158 + MER112 DNA MER1_type 65 260 0 843 168 69 65 chr1 93934135 93934367 -148729986 + MER112 DNA MER1_type 17 249 -11 2501 148 0 0 chr1 93935942 93936308 -148728045 + MER47A DNA MER2_type 1 366 0 410 300 118 57 chr1 93936826 93937123 -148727230 + L2 LINE L2 2941 3255 -17 2131 89 7 4 chr1 93937281 93937562 -148726791 - AluSq SINE Alu -31 282 1 1158 99 0 0 chr1 93937998 93938149 -148726204 - AluSc SINE Alu -7 302 152 469 185 42 59 chr1 93939585 93939704 -148724649 + MIR SINE MIR 57 173 -89 1072 154 6 0 chr1 93940539 93940701 -148723652 + FRAM SINE Alu 1 160 -16 381 327 124 7 chr1 93941231 93941384 -148722969 - L2 LINE L2 -3 3269 3099 685 311 40 18 chr1 93941471 93941699 -148722654 + MIR SINE MIR 28 260 -2 356 316 36 7 chr1 93941900 93942039 -148722314 - L2 LINE L2 -541 2773 2631 212 86 29 0 chr1 93942166 93942201 -148722152 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 512 269 183 0 chr1 93942504 93942679 -148721674 - MIR SINE MIR 0 262 56 198 0 0 0 chr1 93944163 93944185 -148720168 + (CA)n Simple_repeat Simple_repeat 2 23 0 35 41 0 0 chr1 93944251 93944300 -148720053 + GC_rich Low_complexity Low_complexity 1 49 0 183 42 0 0 chr1 93944637 93944661 -148719692 + (CGG)n Simple_repeat Simple_repeat 2 25 0 700 261 86 120 chr1 93945128 93945603 -148718750 - L3 LINE CR1 -160 1417 959 2241 100 13 0 chr1 93945814 93946123 -148718230 - AluSq SINE Alu 0 313 1 31 0 0 0 chr1 93946361 93946392 -148717961 + AT_rich Low_complexity Low_complexity 1 31 0 2386 93 3 0 chr1 93946400 93946711 -148717642 - AluSp SINE Alu -1 312 1 481 258 246 12 chr1 93946937 93947189 -148717164 - L3 LINE CR1 -625 952 642 195 379 29 43 chr1 93947324 93947464 -148716889 - L2 LINE L2 -1 3271 3134 947 285 37 51 chr1 93947705 93947905 -148716448 - MLT1J2 LTR MaLR -21 429 228 2799 106 0 32 chr1 93947905 93948096 -148716257 - THE1B LTR MaLR 0 364 189 2516 57 3 0 chr1 93948096 93948392 -148715961 - AluY SINE Alu -14 297 1 2799 106 0 32 chr1 93948392 93948576 -148715777 - THE1B LTR MaLR -175 189 1 947 285 37 51 chr1 93948576 93948807 -148715546 - MLT1J2 LTR MaLR -222 228 4 628 285 72 17 chr1 93948886 93949121 -148715232 + MIR SINE MIR 5 252 -10 379 256 0 0 chr1 93949305 93949383 -148714970 - L2 LINE L2 -2 3270 3193 414 198 66 0 chr1 93949444 93949535 -148714818 + LTR33A LTR ERVL 427 523 0 2381 128 27 35 chr1 93949713 93950080 -148714273 - THE1B LTR MaLR 0 364 1 199 167 0 48 chr1 93950407 93950449 -148713904 - L2 LINE L2 -1 3271 3232 310 281 12 12 chr1 93950472 93950554 -148713799 + MIR SINE MIR 13 94 -168 1286 279 92 15 chr1 93950562 93951017 -148713336 + LTR33 LTR ERVL 30 519 -2 4422 97 17 10 chr1 93951463 93952097 -148712256 + MER39B LTR ERV1 1 622 0 3324 147 13 9 chr1 93952299 93952843 -148711510 - L1PA16 LINE L1 -13 6153 5608 734 309 127 43 chr1 93953255 93954171 -148710182 + L2 LINE L2 2013 3075 -197 250 239 254 0 chr1 93954356 93954427 -148709926 + MIR3 SINE MIR 115 203 -5 566 252 63 7 chr1 93954473 93954616 -148709737 + MIR SINE MIR 46 196 -66 479 294 82 10 chr1 93954683 93954877 -148709476 + MIR SINE MIR 47 254 -8 192 77 0 0 chr1 93954893 93954919 -148709434 + (GGA)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr1 93955404 93955427 -148708926 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1807 151 3 37 chr1 93955437 93955736 -148708617 - AluJb SINE Alu -23 289 1 804 291 158 8 chr1 93955842 93956324 -148708029 - MLT1G LTR MaLR 0 590 37 443 299 65 7 chr1 93956626 93956780 -148707573 - L2 LINE L2 -213 3059 2897 215 130 0 78 chr1 93957192 93957269 -148707084 + (TA)n Simple_repeat Simple_repeat 1 71 0 2645 124 25 0 chr1 93957902 93958257 -148706096 - THE1B LTR MaLR 0 364 1 2893 16 0 0 chr1 93958729 93959047 -148705306 - AluYb8 SINE Alu 0 318 1 1854 161 4 0 chr1 93960040 93960356 -148703997 + AluSx SINE Alu 4 320 0 431 189 39 119 chr1 93960364 93960653 -148703700 + L1ME4a LINE L1 5726 6118 -3 2137 134 3 0 chr1 93960666 93960971 -148703382 - AluSx SINE Alu -6 306 1 21 0 0 0 chr1 93962437 93962458 -148701895 + AT_rich Low_complexity Low_complexity 1 21 0 2090 114 45 0 chr1 93962517 93962807 -148701546 + AluSx SINE Alu 1 303 -9 979 206 240 0 chr1 93963060 93963327 -148701026 - MER46C DNA MER2_type -7 331 1 37 39 0 0 chr1 93963833 93963884 -148700469 + AT_rich Low_complexity Low_complexity 1 51 0 242 263 137 70 chr1 93967176 93967476 -148696877 - L1MC4a LINE L1 -1633 6175 5856 2091 126 3 3 chr1 93967476 93967762 -148696591 + AluSx SINE Alu 1 286 -26 1925 194 5 24 chr1 93967788 93968169 -148696184 - MLT1A2 LTR MaLR 0 374 1 338 246 0 0 chr1 93968169 93968238 -148696115 - L1MC4a LINE L1 -1951 5857 5789 182 310 171 5 chr1 93969178 93969365 -148694988 - L2 LINE L2 -1148 2166 1949 24 0 0 0 chr1 93969443 93969467 -148694886 + AT_rich Low_complexity Low_complexity 1 24 0 1432 157 13 13 chr1 93970618 93970854 -148693499 - AluSg/x SINE Alu -7 305 70 536 338 67 46 chr1 93970874 93971265 -148693088 + MLT1K LTR MaLR 167 565 -23 250 179 0 54 chr1 93971486 93971542 -148692811 + MIR SINE MIR 112 164 -98 * 719 289 70 4 chr1 93971525 93971753 -148692600 - MIR SINE MIR 0 262 20 246 313 27 107 chr1 93972444 93972553 -148691800 + L2 LINE L2 3134 3229 -43 1269 125 60 96 chr1 93972553 93972834 -148691519 + ORSL DNA AcHobo 2 272 -3 246 313 27 107 chr1 93972834 93972874 -148691479 + L2 LINE L2 3229 3271 -1 24 0 0 0 chr1 93973086 93973110 -148691243 + AT_rich Low_complexity Low_complexity 1 24 0 880 250 86 59 chr1 93977922 93978211 -148686142 + L1MEc LINE L1 1833 2113 -4283 2133 139 0 10 chr1 93978211 93978521 -148685832 + AluSx SINE Alu 1 307 -5 880 250 86 59 chr1 93978521 93978791 -148685562 + L1MEc LINE L1 2113 2407 -3989 2170 93 28 7 chr1 93978967 93979258 -148685095 + AluSg SINE Alu 1 297 -13 210 267 200 11 chr1 93979299 93979389 -148684964 - MIR3 SINE MIR -98 110 4 505 241 23 10 chr1 93979423 93979621 -148684732 - L1MEc LINE L1 -4484 2028 1741 210 156 0 0 chr1 93979621 93979653 -148684700 + T-rich Low_complexity Low_complexity 5 36 0 819 165 17 6 chr1 93979653 93979829 -148684524 + CT-rich Low_complexity Low_complexity 3 180 0 2068 290 77 40 chr1 93979869 93981425 -148682928 - L1MEc LINE L1 -4748 1859 247 258 305 49 0 chr1 93981732 93981814 -148682539 + L2 LINE L2 3180 3265 -48 199 365 73 10 chr1 93981875 93981971 -148682382 - MIR SINE MIR -6 256 155 217 235 0 20 chr1 93982206 93982257 -148682096 + (CCA)n Simple_repeat Simple_repeat 1 50 0 2118 123 16 7 chr1 93982766 93983076 -148681277 - AluSq SINE Alu 0 313 1 666 37 0 0 chr1 93983093 93983174 -148681179 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 687 272 149 46 chr1 93983188 93983752 -148680601 - L2 LINE L2 -39 3274 2593 474 302 67 27 chr1 93984140 93984365 -148679988 - MIR SINE MIR -11 251 18 395 225 19 111 chr1 93984374 93984537 -148679816 + MER5A DNA MER1_type 1 161 -28 2053 92 22 4 chr1 93984547 93984819 -148679534 - AluSq SINE Alu 0 313 37 256 294 163 12 chr1 93985529 93985689 -148678664 - L2 LINE L2 -11 3302 3119 438 258 102 23 chr1 93985942 93986198 -148678155 + MER102b DNA MER1_type 62 337 -4 305 275 80 71 chr1 93986591 93986797 -148677556 - L1MC4 LINE L1 -29 8013 7810 1745 185 7 0 chr1 93986797 93987113 -148677240 + AluJb SINE Alu 1 318 0 305 275 80 71 chr1 93987113 93987876 -148676477 - L1MC4 LINE L1 -232 7810 7098 36521 85 5 13 chr1 93987925 93994117 -148670236 + L1PA6 LINE L1 10 6154 0 249 240 40 10 chr1 93994114 93994214 -148670139 - L1MC5 LINE L1 -899 7062 6960 * 1192 264 50 36 chr1 93994217 93994661 -148669692 - L1MC4a LINE L1 -807 7001 6552 936 121 36 0 chr1 93994682 93994822 -148669531 + AluSq/x SINE Alu 1 145 -167 1976 183 5 28 chr1 93995397 93995796 -148668557 - MLT1B LTR MaLR 0 390 1 358 263 55 49 chr1 93996287 93996434 -148667919 - MIR SINE MIR -67 141 1 615 252 59 43 chr1 93996506 93996760 -148667593 + MIR SINE MIR 5 262 0 230 298 53 0 chr1 93997732 93997789 -148666564 + MIR SINE MIR 26 85 -177 1750 224 98 81 chr1 93997795 93998382 -148665971 - MLT1E2 LTR MaLR 0 624 2 326 202 274 32 chr1 93998383 93998507 -148665846 + MIR SINE MIR 108 261 -1 242 307 64 0 chr1 93998515 93998655 -148665698 + L1MC4a LINE L1 5800 5948 -1860 2054 46 92 14 chr1 93998663 93998945 -148665408 - AluY SINE Alu -7 304 1 403 275 108 32 chr1 93999073 93999324 -148665029 + L1MDa LINE L1 2352 2621 -3919 248 51 0 26 chr1 93999547 93999586 -148664767 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1104 85 55 0 chr1 93999586 93999750 -148664603 - L1PB1 LINE L1 -51 6100 5928 324 302 125 35 chr1 94001229 94001540 -148662813 + L2 LINE L2 2975 3313 0 461 270 46 26 chr1 94002459 94002611 -148661742 - L2 LINE L2 0 3313 3159 367 299 197 0 chr1 94003157 94003304 -148661049 + MIR SINE MIR 86 261 -1 240 367 127 7 chr1 94003618 94003768 -148660585 - L2 LINE L2 -2 3270 3103 189 0 0 0 chr1 94005142 94005163 -148659190 + (CA)n Simple_repeat Simple_repeat 1 21 0 221 157 22 56 chr1 94007713 94007802 -148656551 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 508 222 118 7 chr1 94007802 94007955 -148656398 + MER112 DNA MER1_type 90 259 -1 1981 106 0 0 chr1 94008281 94008535 -148655818 + AluSg SINE Alu 14 267 -43 271 355 38 16 chr1 94009205 94009388 -148654965 + L2 LINE L2 3086 3272 0 199 314 0 0 chr1 94009768 94009819 -148654534 + L2 LINE L2 3258 3308 -5 431 122 14 0 chr1 94009933 94010007 -148654346 - MER116 DNA Mariner 0 80 6 2319 105 0 16 chr1 94010278 94010592 -148653761 + AluSx SINE Alu 1 309 -3 231 279 27 27 chr1 94010599 94010710 -148653643 - MER103 DNA DNA -54 112 2 252 275 39 97 chr1 94011060 94011267 -148653086 - MIR SINE MIR 0 262 68 568 274 121 11 chr1 94011295 94011485 -148652868 - MIR SINE MIR 0 262 52 725 227 97 22 chr1 94012065 94012250 -148652103 - MIR SINE MIR 0 262 64 566 169 144 25 chr1 94012910 94013028 -148651325 - FLAM_C SINE Alu -1 132 1 591 266 60 27 chr1 94013273 94013457 -148650896 + MIR SINE MIR 71 260 -2 226 217 0 0 chr1 94013577 94013623 -148650730 + L2 LINE L2 3268 3313 0 180 125 0 0 chr1 94013623 94013655 -148650698 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr1 94014420 94014442 -148649911 + AT_rich Low_complexity Low_complexity 1 22 0 795 265 85 0 chr1 94014803 94015026 -148649327 - L3b LINE CR1 -57 1526 1285 191 410 30 22 chr1 94015071 94015205 -148649148 - L3 LINE CR1 -1325 252 118 2967 129 48 114 chr1 94015233 94015553 -148648800 + L1MA6 LINE L1 5113 5452 -851 1749 158 84 0 chr1 94015553 94015837 -148648516 + AluSx SINE Alu 1 308 -4 2967 129 48 114 chr1 94015837 94015848 -148648505 + L1MA6 LINE L1 5452 5462 -841 2318 104 0 0 chr1 94015848 94016156 -148648197 + AluSc SINE Alu 2 309 0 2967 129 48 114 chr1 94016156 94016633 -148647720 + L1MA6 LINE L1 5462 5827 -476 1806 162 30 7 chr1 94016633 94016935 -148647418 + AluJb SINE Alu 1 309 -3 2967 129 48 114 chr1 94016935 94017206 -148647147 + L1MA6 LINE L1 5827 6114 -189 297 277 89 27 chr1 94017256 94017368 -148646985 + MER5B DNA MER1_type 1 119 -59 181 334 157 60 chr1 94018490 94018708 -148645645 + L2 LINE L2 2079 2274 -1040 2179 123 13 0 chr1 94018708 94019017 -148645336 - AluSq SINE Alu 0 313 1 181 334 157 60 chr1 94019017 94019418 -148644935 + L2 LINE L2 2274 2758 -556 282 187 220 0 chr1 94019454 94019545 -148644808 - MIR SINE MIR 0 262 152 24 32 0 0 chr1 94019636 94019667 -148644686 + AT_rich Low_complexity Low_complexity 1 31 0 2393 97 0 7 chr1 94020250 94020558 -148643795 + AluSx SINE Alu 1 306 -6 548 287 37 27 chr1 94021207 94021219 -148643134 - MIR SINE MIR -46 216 206 2094 168 8 6 chr1 94021219 94021583 -148642770 + MLT1A1 LTR MaLR 1 365 0 548 287 37 27 chr1 94021583 94021758 -148642595 - MIR SINE MIR -56 206 27 528 273 93 0 chr1 94022501 94022640 -148641713 - MIR SINE MIR -109 153 2 910 260 55 14 chr1 94023220 94023582 -148640771 + Tigger8 DNA MER2_type 172 548 -118 283 205 39 13 chr1 94025307 94025385 -148638968 + GA-rich Low_complexity Low_complexity 5 84 0 497 303 75 58 chr1 94025442 94025683 -148638670 + MIR SINE MIR 18 262 0 1856 191 68 31 chr1 94025683 94026065 -148638288 + MSTD LTR MaLR 1 396 0 532 263 42 21 chr1 94026663 94026853 -148637500 + MIR SINE MIR 7 200 -62 439 254 35 63 chr1 94026897 94027039 -148637314 - MIR3 SINE MIR -48 160 23 184 286 158 47 chr1 94027341 94027512 -148636841 + L3b LINE CR1 1278 1467 -116 377 340 19 6 chr1 94027815 94027971 -148636382 - MIR SINE MIR -56 206 49 205 328 0 0 chr1 94028203 94028267 -148636086 + MIR3 SINE MIR 144 207 -1 325 194 16 0 chr1 94028376 94028438 -148635915 - MER103 DNA DNA -41 125 63 802 232 18 0 chr1 94028875 94029043 -148635310 - MER5A DNA MER1_type -4 185 15 180 0 0 0 chr1 94030323 94030343 -148634010 + (CA)n Simple_repeat Simple_repeat 2 21 0 281 311 201 66 chr1 94031112 94031446 -148632907 - L2 LINE L2 -1 3271 2893 194 339 82 46 chr1 94031959 94032154 -148632199 + L2 LINE L2 2887 3088 -184 1826 244 98 14 chr1 94032386 94032921 -148631432 + MLT1H1 LTR MaLR 5 553 -2 198 0 0 0 chr1 94033851 94033873 -148630480 + (T)n Simple_repeat Simple_repeat 1 22 0 348 341 30 22 chr1 94034632 94034767 -148629586 + L2 LINE L2 3136 3271 -1 551 126 11 0 chr1 94035654 94035749 -148628604 + (TCC)n Simple_repeat Simple_repeat 3 98 0 2235 126 0 0 chr1 94036409 94036719 -148627634 + AluSx SINE Alu 1 310 -2 244 311 33 0 chr1 94036771 94036832 -148627521 + L2 LINE L2 3163 3225 -47 773 309 0 36 chr1 94036868 94037117 -148627236 - MIR SINE MIR 0 262 23 2635 148 5 13 chr1 94037189 94037582 -148626771 + MLT1B LTR MaLR 1 390 0 1942 146 17 0 chr1 94037659 94037954 -148626399 + AluSx SINE Alu 1 300 -12 572 229 195 20 chr1 94038251 94038543 -148625810 - L1ME4a LINE L1 -12 6109 5767 260 210 65 0 chr1 94038605 94038667 -148625686 + L1ME LINE L1 5565 5630 -491 183 340 0 0 chr1 94038702 94038752 -148625601 + L2 LINE L2 3029 3078 -235 3516 268 70 22 chr1 94038796 94040233 -148624120 + L1MEc LINE L1 577 2082 -4314 776 323 36 0 chr1 94040639 94040890 -148623463 + MIR SINE MIR 3 262 0 322 283 43 0 chr1 94041016 94041108 -148623245 + MIR SINE MIR 42 137 -71 2250 192 39 22 chr1 94041982 94042441 -148621912 + MLT1C LTR MaLR 1 467 0 4811 256 50 25 chr1 94042466 94043462 -148620891 + L1MEc LINE L1 34 1004 -5392 2067 114 4 4 chr1 94043462 94043772 -148620581 + AluSc SINE Alu 1 310 0 4811 256 50 25 chr1 94043772 94044156 -148620197 + L1MEc LINE L1 1004 1377 -5019 2022 122 27 7 chr1 94044156 94044452 -148619901 + AluSx SINE Alu 1 302 -10 4811 256 50 25 chr1 94044452 94044485 -148619868 + L1MEc LINE L1 1377 1408 -4988 2074 122 7 24 chr1 94044485 94044780 -148619573 + AluSg SINE Alu 1 290 -20 4811 256 50 25 chr1 94044780 94044933 -148619420 + L1MEc LINE L1 1408 1641 -4755 684 222 40 20 chr1 94044949 94045147 -148619206 + L1MD3 LINE L1 7784 7985 -10 650 201 174 23 chr1 94045148 94045367 -148618986 + L1MEc LINE L1 1629 1880 -4516 2364 103 0 0 chr1 94045369 94045681 -148618672 + AluSq SINE Alu 1 312 -1 1737 174 47 0 chr1 94045794 94046092 -148618261 + AluJb SINE Alu 1 312 0 496 235 168 0 chr1 94046100 94046279 -148618074 + L1MEc LINE L1 2251 2459 -3756 249 200 0 18 chr1 94046290 94046345 -148618008 - MLT2B1 LTR ERVL -3 517 464 243 146 0 0 chr1 94046345 94046386 -148617967 + (TG)n Simple_repeat Simple_repeat 2 42 0 1716 206 87 28 chr1 94046391 94046828 -148617525 - MLT2B1 LTR ERVL -55 465 3 2472 110 22 28 chr1 94046829 94047192 -148617161 + THE1B LTR MaLR 1 361 -3 2566 221 97 0 chr1 94047195 94047879 -148616474 + L1MEc LINE L1 2450 3199 -3016 239 308 90 0 chr1 94048516 94048594 -148615759 + L2 LINE L2 3142 3226 -46 334 297 90 0 chr1 94049649 94049760 -148614593 - MIR SINE MIR -71 191 71 297 68 0 0 chr1 94049923 94049967 -148614386 + (CA)n Simple_repeat Simple_repeat 1 44 0 536 283 89 6 chr1 94050531 94050711 -148613642 + MIR SINE MIR 20 214 -48 234 62 0 0 chr1 94051358 94051390 -148612963 + (T)n Simple_repeat Simple_repeat 1 32 0 258 367 41 14 chr1 94052018 94052165 -148612188 + MIR SINE MIR 64 214 -48 201 268 0 0 chr1 94052317 94052358 -148611995 - MIR3 SINE MIR -50 158 118 228 269 0 0 chr1 94052653 94052705 -148611648 - MIR SINE MIR -17 245 194 259 301 26 80 chr1 94053474 94053521 -148610832 - MIR3 SINE MIR -8 200 152 541 258 96 72 chr1 94053521 94053854 -148610499 + MER102b DNA MER1_type 1 341 0 259 301 26 80 chr1 94053854 94053919 -148610434 - MIR3 SINE MIR -56 152 94 213 250 0 19 chr1 94054231 94054283 -148610070 + L2 LINE L2 3203 3253 -19 912 96 0 0 chr1 94054336 94054451 -148609902 + AluSq/x SINE Alu 3 117 -196 22 35 0 0 chr1 94054462 94054491 -148609862 + AT_rich Low_complexity Low_complexity 1 29 0 1711 163 31 7 chr1 94054528 94054846 -148609507 + AluJb SINE Alu 1 312 0 378 275 108 0 chr1 94055307 94055427 -148608926 + MIR SINE MIR 2 134 -128 1709 55 0 0 chr1 94055444 94055645 -148608708 + L1PA4 LINE L1 5955 6155 0 21 36 0 0 chr1 94055645 94055673 -148608680 + AT_rich Low_complexity Low_complexity 1 28 0 253 361 17 8 chr1 94055674 94055793 -148608560 + MIR SINE MIR 137 256 -6 242 276 31 10 chr1 94055873 94055971 -148608382 - MIR SINE MIR -116 146 47 21 0 0 0 chr1 94056453 94056474 -148607879 + GC_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr1 94056525 94056558 -148607795 + (CCG)n Simple_repeat Simple_repeat 2 34 0 22 56 0 0 chr1 94056674 94056710 -148607643 + GC_rich Low_complexity Low_complexity 1 36 0 789 166 178 0 chr1 94057092 94057249 -148607104 + MER5A DNA MER1_type 1 185 -4 306 0 0 0 chr1 94060032 94060066 -148604287 + (CA)n Simple_repeat Simple_repeat 2 35 0 573 28 0 0 chr1 94060098 94060169 -148604184 + (CA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr1 94063597 94063619 -148600734 + AT_rich Low_complexity Low_complexity 1 22 0 262 245 136 26 chr1 94065656 94065788 -148598565 + MIR3 SINE MIR 3 151 -94 678 283 140 5 chr1 94066299 94066396 -148597957 + L2 LINE L2 2533 2616 -697 843 240 156 91 chr1 94066396 94066955 -148597398 + MLT1G1 LTR MaLR 1 595 0 678 283 140 5 chr1 94066955 94067323 -148597030 + L2 LINE L2 2616 3068 -245 23009 136 33 11 chr1 94067358 94069680 -148594673 + L1M1 LINE L1 17 2286 -5279 2418 106 63 20 chr1 94069680 94070029 -148594324 + THE1B LTR MaLR 1 364 0 23009 136 33 11 chr1 94070029 94070791 -148593562 + L1M1 LINE L1 2286 3030 -4535 2009 145 0 0 chr1 94070791 94071111 -148593242 + AluSx SINE Alu 1 320 0 23009 136 33 11 chr1 94071111 94071853 -148592500 + L1M1 LINE L1 3030 3934 -3631 445 263 38 6 chr1 94071950 94072110 -148592243 + L1M1 LINE L1 3903 4067 -3498 4416 110 38 3 chr1 94072111 94072749 -148591604 + L1MA2 LINE L1 5645 6304 0 205 198 185 37 chr1 94072762 94072843 -148591510 + L2 LINE L2 3111 3203 -110 1627 126 0 0 chr1 94072852 94073075 -148591278 + AluSc SINE Alu 87 309 0 187 244 163 12 chr1 94073255 94073341 -148591012 - L2 LINE L2 0 3272 3174 329 164 18 0 chr1 94073381 94073436 -148590917 - MLT1J LTR MaLR -6 505 450 471 159 0 0 chr1 94073441 94073510 -148590843 + AluJ/FLAM SINE Alu 5 73 -239 716 218 18 7 chr1 94073567 94073716 -148590637 - MLT1J LTR MaLR -336 146 1 261 308 48 39 chr1 94073751 94073855 -148590498 - L2 LINE L2 -178 3094 2990 2369 157 118 5 chr1 94074041 94074456 -148589897 - MLT2C2 LTR ERVL 0 464 3 186 400 11 0 chr1 94074969 94075064 -148589289 + L3 LINE CR1 1218 1313 -264 318 281 134 57 chr1 94075064 94075150 -148589203 + Charlie8 DNA MER1_type 1 79 -262 1653 179 4 7 chr1 94075150 94075429 -148588924 + AluJo SINE Alu 1 278 -34 333 0 0 0 chr1 94075429 94075466 -148588887 + (CA)n Simple_repeat Simple_repeat 2 38 0 318 281 134 57 chr1 94075466 94075624 -148588729 + Charlie8 DNA MER1_type 78 265 -76 2202 103 10 7 chr1 94075646 94075947 -148588406 + AluSx SINE Alu 1 302 -10 225 0 0 0 chr1 94075977 94076002 -148588351 + (TG)n Simple_repeat Simple_repeat 1 25 0 195 42 0 0 chr1 94077137 94077161 -148587192 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 450 0 0 0 chr1 94077160 94077210 -148587143 + (CA)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr1 94077283 94077308 -148587045 + AT_rich Low_complexity Low_complexity 1 25 0 684 230 63 16 chr1 94077792 94077983 -148586370 + MLT1L LTR MaLR 416 615 0 247 331 86 45 chr1 94078112 94078381 -148585972 - L2 LINE L2 -1 3271 2992 771 241 105 9 chr1 94079501 94079729 -148584624 + MIR SINE MIR 8 257 -5 1448 150 4 9 chr1 94080189 94080416 -148583937 - AluJb SINE Alu 0 312 87 1912 244 136 50 chr1 94080416 94081057 -148583296 + L2 LINE L2 1820 2405 -908 2098 142 0 0 chr1 94081057 94081367 -148582986 + AluJb SINE Alu 1 310 -2 1912 244 136 50 chr1 94081367 94081440 -148582913 + L2 LINE L2 2405 2470 -843 875 78 86 0 chr1 94081440 94081568 -148582785 + MER85 DNA T2_type 1 139 0 1912 244 136 50 chr1 94081568 94081705 -148582648 + L2 LINE L2 2470 2594 -719 1540 118 8 21 chr1 94081705 94081942 -148582411 + AluSg/x SINE Alu 79 312 0 1912 244 136 50 chr1 94081942 94082479 -148581874 + L2 LINE L2 2594 3310 -3 23 0 0 0 chr1 94084671 94084694 -148579659 + AT_rich Low_complexity Low_complexity 1 23 0 663 293 58 29 chr1 94084940 94085242 -148579111 - L1ME4a LINE L1 -246 5875 5560 2358 102 0 0 chr1 94085242 94085537 -148578816 - AluSx SINE Alu -17 295 1 663 293 58 29 chr1 94085537 94085579 -148578774 - L1ME4a LINE L1 -561 5560 5521 1339 207 107 27 chr1 94085692 94086030 -148578323 + MLT1A1 LTR MaLR 1 365 0 186 314 0 0 chr1 94087651 94087702 -148576651 + MIR SINE MIR 64 114 -148 804 227 100 0 chr1 94087734 94087954 -148576399 - MIR SINE MIR -18 244 3 604 226 58 34 chr1 94088893 94089101 -148575252 + L2 LINE L2 2925 3137 -176 558 81 0 0 chr1 94089138 94089219 -148575134 - L1MC3 LINE L1 -236 7572 7454 281 236 0 0 chr1 94089257 94089312 -148575041 + L2 LINE L2 3252 3306 -7 4250 161 30 46 chr1 94089635 94090519 -148573834 + L1MC3 LINE L1 6915 7784 -1 2228 109 3 3 chr1 94090869 94091180 -148573173 - AluSx SINE Alu -1 311 1 22 0 0 0 chr1 94091790 94091812 -148572541 + AT_rich Low_complexity Low_complexity 1 22 0 2298 113 0 0 chr1 94092027 94092327 -148572026 - AluSx SINE Alu -12 300 1 1457 192 115 28 chr1 94092455 94092819 -148571534 + MSTD LTR MaLR 1 396 0 449 289 154 10 chr1 94093425 94093626 -148570727 + LTR33 LTR ERVL 29 258 -263 421 254 24 16 chr1 94093652 94093778 -148570575 + LTR33 LTR ERVL 327 453 -68 285 346 0 9 chr1 94094733 94094840 -148569513 + Tigger8 DNA MER2_type 2 107 -559 248 372 54 23 chr1 94094899 94095028 -148569325 + L2 LINE L2 3133 3265 -7 2455 97 0 0 chr1 94096427 94096738 -148567615 - AluY SINE Alu 0 311 1 542 248 66 53 chr1 94096740 94096966 -148567387 + MLT1J LTR MaLR 34 262 -249 270 275 50 0 chr1 94097034 94097114 -148567239 + MER5C DNA MER1_type 36 119 -205 266 113 0 145 chr1 94097114 94097176 -148567177 + L1MA5A LINE L1 6200 6252 -45 1611 83 5 5 chr1 94097176 94097380 -148566973 + AluSp SINE Alu 2 205 -108 213 195 0 0 chr1 94098336 94098377 -148565976 + G-rich Low_complexity Low_complexity 2 42 0 318 308 65 37 chr1 94098377 94098591 -148565762 + MIR SINE MIR 31 250 -12 4736 179 8 16 chr1 94098988 94099887 -148564466 + L1 LINE L1 4018 4911 -1235 599 14 0 0 chr1 94099887 94099957 -148564396 + L1PA5 LINE L1 6083 6153 -1 4736 179 8 16 chr1 94099957 94099993 -148564360 + L1 LINE L1 4911 4946 -1200 396 220 22 0 chr1 94100042 94100133 -148564220 + MIR SINE MIR 96 188 -74 209 299 69 11 chr1 94100206 94100293 -148564060 + MIR SINE MIR 117 208 -54 2338 107 40 31 chr1 94101004 94101564 -148562789 + LTR10E LTR ERV1 1 623 -10 1034 183 16 16 chr1 94102195 94102386 -148561967 + MER20 DNA MER1_type 29 219 0 506 229 22 101 chr1 94102460 94102639 -148561714 + L1MC4 LINE L1 5453 5617 -2191 254 286 0 0 chr1 94102639 94102695 -148561658 + polypyrimidine Low_complexity Low_complexity 1 56 0 1196 199 120 3 chr1 94102937 94103238 -148561115 + L1MC4 LINE L1 6466 6801 -1241 397 237 10 0 chr1 94103224 94103321 -148561032 - L1MA9 LINE L1 -219 6093 5996 * 717 160 30 148 chr1 94103329 94103372 -148560981 + L1MA9 LINE L1 6066 6112 -200 1603 180 14 10 chr1 94103372 94103661 -148560692 + AluJo SINE Alu 1 290 -22 717 160 30 148 chr1 94103661 94103854 -148560499 + L1MA9 LINE L1 6112 6274 -38 2855 248 92 53 chr1 94103867 94104210 -148560143 + L1MC4 LINE L1 6789 7117 -925 2018 125 3 39 chr1 94104210 94104521 -148559832 + AluJb SINE Alu 1 300 -12 2855 248 92 53 chr1 94104521 94105233 -148559120 + L1MC4 LINE L1 7117 7885 -157 22 0 0 0 chr1 94105249 94105271 -148559082 + AT_rich Low_complexity Low_complexity 1 22 0 291 54 0 0 chr1 94105271 94105308 -148559045 + (CA)n Simple_repeat Simple_repeat 2 38 0 240 167 0 0 chr1 94105308 94105356 -148558997 + GA-rich Low_complexity Low_complexity 1 48 0 423 249 249 5 chr1 94107527 94107732 -148556621 - MIR SINE MIR -6 256 2 2150 95 0 3 chr1 94109059 94109389 -148554964 + AluSg SINE Alu 1 329 0 21 0 0 0 chr1 94110383 94110404 -148553949 + GC_rich Low_complexity Low_complexity 1 21 0 203 138 0 0 chr1 94111129 94111158 -148553195 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 1635 42 16 0 chr1 94111543 94111732 -148552621 + AluSg/x SINE Alu 91 282 -30 189 0 0 0 chr1 94112240 94112261 -148552092 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1963 148 0 7 chr1 94112690 94112980 -148551373 + AluSx SINE Alu 5 292 -20 1983 148 0 7 chr1 94114022 94114319 -148550034 + AluJb SINE Alu 18 312 0 21 0 0 0 chr1 94114703 94114724 -148549629 + AT_rich Low_complexity Low_complexity 1 21 0 2384 96 0 0 chr1 94114724 94115025 -148549328 + AluY SINE Alu 1 301 -10 2188 114 0 7 chr1 94115041 94115348 -148549005 + AluY SINE Alu 1 305 -6 708 276 56 6 chr1 94115355 94115672 -148548681 + MLT1I LTR MaLR 63 409 0 3760 104 6 11 chr1 94115680 94116209 -148548144 - MER1A DNA MER1_type -1 526 1 2251 100 0 26 chr1 94116709 94117018 -148547335 + AluSc SINE Alu 1 301 -8 2328 90 0 0 chr1 94118116 94118405 -148545948 - AluSc SINE Alu -20 289 1 5269 235 107 55 chr1 94118616 94118889 -148545464 + L1ME2 LINE L1 2456 2713 -3451 1159 97 6 11 chr1 94118889 94119065 -148545288 - L1PB1 LINE L1 -1 6150 5976 5269 235 107 55 chr1 94119065 94119358 -148544995 + L1ME2 LINE L1 2713 2989 -3175 287 224 0 53 chr1 94119358 94119434 -148544919 - Tigger5 DNA MER2_type 0 2323 2252 5269 235 107 55 chr1 94119434 94119810 -148544543 + L1ME2 LINE L1 2989 3344 -2820 5464 94 80 0 chr1 94119810 94120575 -148543778 + LTR12 LTR ERV1 1 826 0 5269 235 107 55 chr1 94120575 94121100 -148543253 + L1ME2 LINE L1 3344 3840 -2324 1988 124 7 0 chr1 94121100 94121411 -148542942 - AluSx SINE Alu 0 313 1 5269 235 107 55 chr1 94121411 94121440 -148542913 + L1ME2 LINE L1 3840 3866 -2298 1741 176 3 20 chr1 94121440 94121746 -148542607 + AluJo SINE Alu 1 301 -11 5269 235 107 55 chr1 94121746 94122128 -148542225 + L1ME2 LINE L1 3866 4227 -1937 2443 60 6 6 chr1 94122128 94122445 -148541908 + L1PA8 LINE L1 5848 6164 -8 5269 235 107 55 chr1 94122445 94123907 -148540446 + L1ME2 LINE L1 4227 6059 -105 594 201 157 19 chr1 94124396 94124555 -148539798 + MER5A DNA MER1_type 9 189 0 6700 78 0 2 chr1 94125492 94125847 -148538506 + L1PA8A LINE L1 4899 6131 0 6756 78 0 2 chr1 94125847 94126727 -148537626 + L1PA8A LINE L1 5254 6131 0 488 223 145 60 chr1 94126725 94127043 -148537310 + L1MEd LINE L1 895 1239 -4880 * 343 302 137 0 chr1 94127792 94128040 -148536313 + L1MEd LINE L1 2098 2379 -3750 286 216 0 57 chr1 94128617 94128705 -148535648 + MIR SINE MIR 130 212 -50 1793 158 3 0 chr1 94129082 94129366 -148534987 - AluJb SINE Alu -27 285 1 388 265 106 15 chr1 94129458 94129590 -148534763 - LTR16B LTR ERVL -320 144 1 1904 219 72 16 chr1 94129591 94130076 -148534277 + L1MC4 LINE L1 7331 7842 -200 338 204 11 75 chr1 94130838 94130931 -148533422 + MIR SINE MIR 61 147 -115 336 291 19 6 chr1 94130903 94131020 -148533333 - MIR SINE MIR -69 139 35 * 226 236 55 0 chr1 94131213 94131268 -148533085 + MIR SINE MIR 29 86 -176 240 250 125 14 chr1 94131390 94131462 -148532891 - L2 LINE L2 -19 3253 3174 2356 96 3 0 chr1 94131491 94131793 -148532560 - AluSg SINE Alu -7 303 1 372 212 0 0 chr1 94131876 94131942 -148532411 - AluJb SINE Alu -10 292 227 1082 169 0 17 chr1 94131944 94132121 -148532232 - AluJb SINE Alu -138 174 1 23 0 0 0 chr1 94132175 94132198 -148532155 + AT_rich Low_complexity Low_complexity 1 23 0 2194 105 3 7 chr1 94132222 94132527 -148531826 - AluSx SINE Alu -8 304 1 1192 65 0 0 chr1 94133652 94133791 -148530562 - MER85 DNA T2_type 0 139 1 1847 158 103 3 chr1 94134777 94135088 -148529265 - MER2 DNA MER2_type 0 344 3 304 192 33 25 chr1 94135091 94135211 -148529142 + (CATATA)n Simple_repeat Simple_repeat 2 122 0 225 111 0 48 chr1 94135601 94135664 -148528689 + (CATGC)n Simple_repeat Simple_repeat 5 64 0 266 297 149 14 chr1 94135775 94135923 -148528430 + L2 LINE L2 3143 3310 -3 3045 123 21 41 chr1 94137093 94137605 -148526748 + L1MC1 LINE L1 5832 6333 0 26 0 0 0 chr1 94137634 94137660 -148526693 + AT_rich Low_complexity Low_complexity 1 26 0 708 245 119 0 chr1 94137731 94137890 -148526463 - MER45A DNA AcHobo 0 178 1 3138 129 64 115 chr1 94138163 94138822 -148525531 + MER44D DNA MER2_type 2 626 -79 2481 96 47 0 chr1 94138822 94139166 -148525187 - MER46B DNA MER2_type -1 235 1 420 265 0 0 chr1 94139166 94139247 -148525106 + Tigger7 DNA MER2_type 2405 2485 -2 267 152 0 0 chr1 94139542 94139588 -148524765 + (TA)n Simple_repeat Simple_repeat 1 46 0 2655 58 0 3 chr1 94139590 94139902 -148524451 - AluY SINE Alu 0 311 1 345 275 281 0 chr1 94140573 94140751 -148523602 - MIR SINE MIR -3 259 32 221 308 65 65 chr1 94140907 94141014 -148523339 - MIR3 SINE MIR -90 118 12 1606 97 0 0 chr1 94141486 94141693 -148522660 - AluSg/x SINE Alu -10 302 96 2056 138 3 10 chr1 94141707 94142018 -148522335 + AluSc SINE Alu 1 309 0 1973 147 14 0 chr1 94143020 94143313 -148521040 - AluJb SINE Alu -15 297 1 186 43 0 0 chr1 94144027 94144050 -148520303 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1547 106 26 9 chr1 94144117 94144344 -148520009 + L1PA8 LINE L1 5942 6172 0 239 283 308 17 chr1 94144552 94144672 -148519681 - MIR3 SINE MIR -21 187 33 883 173 0 0 chr1 94144914 94145047 -148519306 - FLAM_C SINE Alu 0 133 1 1906 147 0 23 chr1 94147110 94147410 -148516943 + AluJo SINE Alu 3 295 -17 1660 179 7 0 chr1 94148869 94149149 -148515204 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr1 94149155 94149179 -148515174 + (CA)n Simple_repeat Simple_repeat 2 25 0 2047 122 10 3 chr1 94149342 94149638 -148514715 - AluSx SINE Alu -14 298 1 330 289 58 19 chr1 94151273 94151377 -148512976 - L2 LINE L2 -5 3267 3160 207 250 23 0 chr1 94151744 94151788 -148512565 + MIR SINE MIR 106 150 -112 1083 205 66 44 chr1 94152563 94152880 -148511473 + MER33 DNA MER1_type 1 324 0 443 245 0 11 chr1 94153129 94153223 -148511130 + MIR SINE MIR 15 107 -155 216 261 91 45 chr1 94154034 94154122 -148510231 + MIR SINE MIR 150 241 -21 348 227 292 26 chr1 94157092 94157246 -148507107 - MIR SINE MIR -46 216 22 2480 77 0 3 chr1 94158340 94158651 -148505702 + AluY SINE Alu 1 310 -1 21 0 0 0 chr1 94158685 94158706 -148505647 + AT_rich Low_complexity Low_complexity 1 21 0 362 271 142 40 chr1 94159093 94159318 -148505035 + L2 LINE L2 2837 3084 -229 915 250 26 9 chr1 94159436 94159668 -148504685 + MIR SINE MIR 1 236 -26 2833 129 44 2 chr1 94159760 94160171 -148504182 + MSTC LTR MaLR 1 428 0 299 396 7 20 chr1 94160826 94160975 -148503378 + MIR SINE MIR 89 235 -27 2234 92 4 0 chr1 94161378 94161686 -148502667 + AluSg SINE Alu 1 309 0 2106 120 0 7 chr1 94162846 94163173 -148501180 - AluSx SINE Alu 0 326 2 854 247 43 25 chr1 94163492 94163579 -148500774 - MIR SINE MIR -21 241 157 1384 130 39 26 chr1 94163579 94163810 -148500543 - MER46A DNA MER2_type -1 235 2 854 247 43 25 chr1 94163810 94163957 -148500396 - MIR SINE MIR -105 157 3 1583 289 23 93 chr1 94164365 94164432 -148499921 + L1M2c LINE L1 1 71 -7138 207 0 0 0 chr1 94164432 94164455 -148499898 + (CA)n Simple_repeat Simple_repeat 1 23 0 1583 289 23 93 chr1 94164455 94165109 -148499244 + L1M2c LINE L1 71 1055 -6154 3273 198 24 34 chr1 94165340 94165975 -148498378 + L1M2c LINE L1 1736 2376 -4833 1917 155 10 3 chr1 94165975 94166284 -148498069 + AluSx SINE Alu 1 311 -1 3273 198 24 34 chr1 94166284 94166482 -148497871 + L1M2c LINE L1 2376 2574 -4635 2416 71 0 23 chr1 94166482 94166790 -148497563 + AluY SINE Alu 1 301 -10 3273 198 24 34 chr1 94166790 94167297 -148497056 + L1M2c LINE L1 2574 3038 -4171 427 204 186 41 chr1 94168239 94168411 -148495942 + L2 LINE L2 3116 3312 -1 2039 119 0 45 chr1 94168916 94169226 -148495127 + AluSx SINE Alu 1 296 -16 3289 176 88 42 chr1 94169675 94170395 -148493958 + L1MC4 LINE L1 7187 7951 -91 2353 90 7 0 chr1 94170395 94170694 -148493659 + AluSq SINE Alu 1 301 -12 3289 176 88 42 chr1 94170694 94170791 -148493562 + L1MC4 LINE L1 7951 8042 0 246 326 71 14 chr1 94170896 94171037 -148493316 - MIR3 SINE MIR -45 163 15 206 186 23 0 chr1 94171070 94171113 -148493240 + L2 LINE L2 3254 3297 -16 240 280 56 47 chr1 94171164 94171271 -148493082 + L2 LINE L2 3167 3274 -39 722 217 55 87 chr1 94171535 94171788 -148492565 - MIR SINE MIR -3 259 15 893 287 201 26 chr1 94171861 94172067 -148492286 - L2 LINE L2 0 3313 3144 2939 86 19 8 chr1 94172067 94172438 -148491915 + THE1C LTR MaLR 1 375 0 893 287 201 26 chr1 94172438 94172872 -148491481 - L2 LINE L2 -169 3144 2555 382 256 139 9 chr1 94173950 94174165 -148490188 + L2 LINE L2 2815 3057 -256 372 108 0 84 chr1 94174176 94174259 -148490094 + L1MA7 LINE L1 6216 6291 0 941 179 95 54 chr1 94174458 94174870 -148489483 + MER110A LTR ERV1 26 477 -14 551 258 68 6 chr1 94174875 94175038 -148489315 + L2 LINE L2 3140 3312 -1 198 71 0 0 chr1 94175198 94175226 -148489127 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 575 179 132 0 chr1 94175226 94175332 -148489021 - AluJb SINE Alu -192 120 1 24 32 0 0 chr1 94175438 94175469 -148488884 + AT_rich Low_complexity Low_complexity 1 31 0 219 190 17 17 chr1 94176644 94176702 -148487651 + (CA)n Simple_repeat Simple_repeat 2 59 0 180 276 126 23 chr1 94176885 94176972 -148487381 + MIR3 SINE MIR 113 208 0 822 182 8 0 chr1 94177044 94177176 -148487177 + FLAM_A SINE Alu 1 133 0 469 254 77 0 chr1 94177287 94177456 -148486897 - MIR SINE MIR 0 262 81 21 0 0 0 chr1 94178069 94178090 -148486263 + AT_rich Low_complexity Low_complexity 1 21 0 297 308 0 48 chr1 94178256 94178360 -148485993 - MIR SINE MIR -151 111 13 1657 193 17 7 chr1 94179389 94179690 -148484663 + AluJo SINE Alu 1 304 -8 1034 269 17 4 chr1 94180183 94180421 -148483932 + MIR SINE MIR 20 260 -2 2320 115 136 16 chr1 94180623 94181005 -148483348 + MSTA LTR MaLR 1 428 0 3717 100 36 38 chr1 94181571 94182099 -148482254 - MER1A DNA MER1_type 0 527 1 2299 101 3 16 chr1 94183095 94183411 -148480942 + AluSx SINE Alu 1 312 0 218 250 17 0 chr1 94183511 94183571 -148480782 + (TG)n Simple_repeat Simple_repeat 1 61 0 242 141 272 22 chr1 94183930 94184022 -148480331 + Charlie7 DNA MER1_type 3 117 -2495 375 217 93 8 chr1 94184105 94184234 -148480119 + Charlie7 DNA MER1_type 2473 2612 0 589 279 154 0 chr1 94184249 94184450 -148479903 + MLT1K LTR MaLR 323 554 -34 832 180 0 23 chr1 94184780 94185024 -148479329 + GA-rich Low_complexity Low_complexity 1 238 0 2357 135 57 52 chr1 94185693 94186412 -148477941 + MER21A LTR ERV1 1 681 -199 2313 125 0 0 chr1 94186413 94186724 -148477629 + AluSx SINE Alu 1 311 -1 226 319 168 25 chr1 94186822 94186941 -148477412 - L2 LINE L2 -19 3253 3118 1890 149 0 40 chr1 94187512 94187834 -148476519 + AluSx SINE Alu 1 309 -3 29 0 0 0 chr1 94188469 94188498 -148475855 + AT_rich Low_complexity Low_complexity 1 29 0 432 37 0 0 chr1 94188616 94188670 -148475683 + (CA)n Simple_repeat Simple_repeat 2 55 0 1743 159 30 3 chr1 94188904 94189205 -148475148 + AluSx SINE Alu 1 309 -3 935 267 55 67 chr1 94190125 94190324 -148474029 + Charlie7 DNA MER1_type 1 201 -2411 1797 183 0 3 chr1 94190324 94190624 -148473729 + AluJo SINE Alu 6 304 -8 935 267 55 67 chr1 94190624 94190844 -148473509 + Charlie7 DNA MER1_type 201 415 -2197 21170 146 41 11 chr1 94190850 94193610 -148470743 + L1MA2 LINE L1 16 2692 -5031 2300 97 0 0 chr1 94193610 94193898 -148470455 + AluSg SINE Alu 1 288 -22 21170 146 41 11 chr1 94193898 94195868 -148468485 + L1MA2 LINE L1 2692 4602 -3121 3307 61 17 86 chr1 94195868 94196345 -148468008 - MLT2A1 LTR ERVL 0 444 1 21170 146 41 11 chr1 94196345 94199086 -148465267 + L1MA2 LINE L1 4602 7723 0 364 286 93 48 chr1 94199095 94199385 -148464968 + Charlie7 DNA MER1_type 400 702 -1910 837 120 0 100 chr1 94199410 94199560 -148464793 - FLAM_C SINE Alu -7 136 2 275 267 180 0 chr1 94199583 94199733 -148464620 + Charlie7 DNA MER1_type 2435 2611 -1 1716 120 0 56 chr1 94199873 94200139 -148464214 - AluSq SINE Alu -60 253 3 1745 183 10 10 chr1 94200381 94200693 -148463660 - AluJb SINE Alu 0 312 1 1273 245 128 43 chr1 94200743 94200796 -148463557 - HAL1 LINE L1 -110 2397 2350 2467 73 3 0 chr1 94200796 94201097 -148463256 - AluSg SINE Alu -8 302 1 1273 245 128 43 chr1 94201097 94201732 -148462621 - HAL1 LINE L1 -157 2350 1651 1853 138 14 7 chr1 94201837 94202126 -148462227 + AluJb SINE Alu 1 291 -21 472 293 134 29 chr1 94202315 94202725 -148461628 + L2 LINE L2 1851 2385 -929 2944 191 0 8 chr1 94202775 94203382 -148460971 + L1 LINE L1 4355 4956 -1190 2271 102 3 10 chr1 94203382 94203685 -148460668 + AluSp SINE Alu 1 301 -12 3833 87 26 0 chr1 94203685 94204296 -148460057 + L1P5 LINE L1 5162 5789 -362 318 26 0 0 chr1 94204300 94204339 -148460014 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 228 286 0 11 chr1 94204344 94204435 -148459918 - L1MC4 LINE L1 -1339 6703 6614 325 266 21 43 chr1 94204439 94204533 -148459820 + L1MC4 LINE L1 6614 6705 -1337 301 260 0 42 chr1 94204469 94204565 -148459788 - L1MC4 LINE L1 -1337 6705 6614 * 238 116 0 0 chr1 94204584 94204627 -148459726 + LTR66 LTR ERVL 399 441 -169 245 244 47 0 chr1 94204633 94204719 -148459634 + L1MC4 LINE L1 6614 6703 -1339 615 185 0 0 chr1 94204724 94204870 -148459483 + (TA)n Simple_repeat Simple_repeat 1 146 0 2780 91 8 0 chr1 94204873 94205235 -148459118 + L1PB1 LINE L1 5782 6146 -5 226 209 0 0 chr1 94205332 94205375 -148458978 + MER5B DNA MER1_type 7 49 -129 874 132 15 15 chr1 94205383 94205519 -148458834 - AluJo SINE Alu -176 136 1 582 227 15 23 chr1 94205519 94205651 -148458702 - MER5B DNA MER1_type -33 145 15 585 255 266 22 chr1 94205687 94206374 -148457979 + L2 LINE L2 2462 3313 0 188 143 24 0 chr1 94206436 94206478 -148457875 + (TAA)n Simple_repeat Simple_repeat 2 44 0 22 70 0 0 chr1 94206485 94206528 -148457825 + AT_rich Low_complexity Low_complexity 1 43 0 2535 73 0 10 chr1 94207182 94207495 -148456858 + AluSg SINE Alu 1 310 0 1098 40 0 0 chr1 94207495 94207620 -148456733 + L1PA3 LINE L1 6031 6155 0 1595 166 39 7 chr1 94207803 94207924 -148456429 + AluJo SINE Alu 1 117 -195 194 0 0 37 chr1 94207924 94207951 -148456402 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1595 166 39 7 chr1 94207951 94208113 -148456240 + AluJo SINE Alu 117 293 -19 16576 114 13 47 chr1 94209759 94210787 -148453566 - Tigger1 DNA MER2_type 0 2418 1357 2873 13 0 0 chr1 94210787 94211097 -148453256 - AluYb8 SINE Alu -8 310 1 16576 114 13 47 chr1 94211097 94212570 -148451783 - Tigger1 DNA MER2_type -1061 1357 1 23 68 0 0 chr1 94212939 94212983 -148451370 + AT_rich Low_complexity Low_complexity 1 44 0 356 86 0 17 chr1 94213541 94213599 -148450754 + (TA)n Simple_repeat Simple_repeat 2 58 0 207 0 0 0 chr1 94214337 94214360 -148449993 + (CCCCG)n Simple_repeat Simple_repeat 5 27 0 656 216 97 0 chr1 94214958 94215092 -148449261 - FRAM SINE Alu -19 147 1 369 154 0 15 chr1 94215965 94216030 -148448323 + FAM SINE Alu 89 152 -23 * 1508 153 105 48 chr1 94216026 94216340 -148448013 - MER1B DNA MER1_type -7 332 1 212 262 16 49 chr1 94216405 94216466 -148447887 - MER5A DNA MER1_type -76 113 55 201 39 0 0 chr1 94216470 94216496 -148447857 + (CTG)n Simple_repeat Simple_repeat 1 26 0 1770 171 13 3 chr1 94217038 94217347 -148447006 + AluJo SINE Alu 1 312 0 319 293 104 34 chr1 94217501 94217856 -148446497 - L1M4 LINE L1 -852 5294 4915 518 238 70 14 chr1 94217873 94218016 -148446337 - MER58B DNA MER1_type -3 338 188 5754 155 46 25 chr1 94218047 94218334 -148446019 - L1MC1 LINE L1 0 6333 6054 1672 187 15 91 chr1 94218334 94218729 -148445624 + MLT1A1 LTR MaLR 1 365 0 5754 155 46 25 chr1 94218729 94219466 -148444887 - L1MC1 LINE L1 -279 6054 5282 1422 160 102 36 chr1 94219466 94219741 -148444612 + AluJo SINE Alu 1 293 -19 5754 155 46 25 chr1 94219741 94219943 -148444410 - L1MC1 LINE L1 -1051 5282 5086 4361 94 58 9 chr1 94219958 94220599 -148443754 + L1PB1 LINE L1 3 674 -6189 14052 173 35 50 chr1 94220637 94223314 -148441039 + L1PB1 LINE L1 1301 4017 -2850 2255 130 0 0 chr1 94223314 94223615 -148440738 + AluSx SINE Alu 1 301 -11 14052 173 35 50 chr1 94223615 94223750 -148440603 + L1PB1 LINE L1 4017 4153 -2714 241 174 0 0 chr1 94223750 94223796 -148440557 - LTR66 LTR ERVL -171 439 394 14052 173 35 50 chr1 94223796 94224161 -148440192 + L1PB1 LINE L1 4153 4522 -2345 2219 139 51 20 chr1 94224161 94224514 -148439839 - THE1B LTR MaLR 0 364 1 12736 84 8 0 chr1 94224514 94226081 -148438272 - THE1B-int LTR MaLR 0 1580 1 2207 126 46 52 chr1 94226081 94226157 -148438196 - THE1B LTR MaLR 0 364 289 2116 118 16 26 chr1 94226157 94226463 -148437890 + AluSq SINE Alu 1 303 -10 2207 126 46 52 chr1 94226463 94226752 -148437601 - THE1B LTR MaLR -75 289 1 14052 173 35 50 chr1 94226752 94228554 -148435799 + L1PB1 LINE L1 4520 6297 -570 1784 151 43 33 chr1 94228554 94228858 -148435495 - AluSx SINE Alu -5 307 1 14052 173 35 50 chr1 94228858 94229421 -148434932 + L1PB1 LINE L1 6297 6867 0 2507 70 0 22 chr1 94229489 94229802 -148434551 + AluY SINE Alu 1 306 -5 7931 228 26 24 chr1 94229807 94230074 -148434279 - L1MC1 LINE L1 -1062 5084 4819 1829 157 3 27 chr1 94230074 94230374 -148433979 - AluJb SINE Alu -19 293 1 7931 228 26 24 chr1 94230374 94230445 -148433908 - L1MC1 LINE L1 -1327 4819 4750 2237 98 0 44 chr1 94230445 94230761 -148433592 - AluSq SINE Alu -11 302 1 7931 228 26 24 chr1 94230761 94232589 -148431764 - L1MC1 LINE L1 -1396 4750 2912 906 129 0 0 chr1 94232593 94232717 -148431636 - AluJb SINE Alu -11 301 178 234 247 67 11 chr1 94232743 94232832 -148431521 - L1M4 LINE L1 -1889 4257 4164 237 294 11 22 chr1 94233187 94233279 -148431074 + MER5A DNA MER1_type 22 112 -77 283 167 14 14 chr1 94233296 94233368 -148430985 + GA-rich Low_complexity Low_complexity 4 75 0 1950 146 0 29 chr1 94233427 94233736 -148430617 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 94234514 94234536 -148429817 + AT_rich Low_complexity Low_complexity 1 22 0 1769 148 14 11 chr1 94234799 94235083 -148429270 - AluJo SINE Alu -27 285 1 2248 129 68 0 chr1 94235415 94235741 -148428612 + MER7A DNA MER2_type 1 346 0 3447 228 143 84 chr1 94239611 94240236 -148424117 - L2 LINE L2 -4 3309 2722 1879 146 16 7 chr1 94240236 94240545 -148423808 - AluJo SINE Alu 0 312 1 3447 228 143 84 chr1 94240545 94241216 -148423137 - L2 LINE L2 -591 2722 2092 831 107 0 33 chr1 94241216 94241337 -148423016 + FRAM SINE Alu 38 154 -22 3447 228 143 84 chr1 94241337 94241896 -148422457 - L2 LINE L2 -1221 2092 1227 603 309 69 59 chr1 94242022 94242427 -148421926 + MLT1J2 LTR MaLR 2 410 -40 300 226 170 9 chr1 94242829 94242935 -148421418 - MER5A DNA MER1_type -66 123 1 2325 96 3 3 chr1 94243643 94243944 -148420409 + AluY SINE Alu 1 301 -10 1155 156 11 5 chr1 94244036 94244222 -148420131 - AluJb SINE Alu -125 187 1 570 276 75 6 chr1 94244265 94244439 -148419914 - L2 LINE L2 -15 3298 3113 958 257 30 13 chr1 94244441 94244678 -148419675 - MIR SINE MIR -1 261 21 550 147 284 0 chr1 94244694 94244810 -148419543 + MER5A DNA MER1_type 41 189 0 284 315 24 24 chr1 94244834 94244961 -148419392 - L2 LINE L2 -217 3096 2970 273 313 107 9 chr1 94245499 94245611 -148418742 + MER5A DNA MER1_type 66 188 -1 284 254 151 8 chr1 94245871 94245997 -148418356 + MIR SINE MIR 112 255 -7 306 269 166 14 chr1 94246463 94246608 -148417745 + MIR3 SINE MIR 36 202 -6 184 216 0 0 chr1 94247417 94247454 -148416899 + L2 LINE L2 3272 3308 -5 955 278 66 29 chr1 94247501 94248063 -148416290 + L1MEc LINE L1 1056 1638 -4758 1494 176 9 50 chr1 94248066 94248159 -148416194 + L1MA4 LINE L1 5962 6057 -243 2460 78 0 0 chr1 94248159 94248455 -148415898 + AluSc SINE Alu 1 296 -13 1494 176 9 50 chr1 94248455 94248684 -148415669 + L1MA4 LINE L1 6057 6271 -29 1927 176 67 21 chr1 94248721 94248959 -148415394 + L1MEc LINE L1 1624 1850 -4546 2405 58 0 14 chr1 94248959 94249251 -148415102 + AluY SINE Alu 1 288 -23 189 0 0 0 chr1 94249253 94249274 -148415079 + (GA)n Simple_repeat Simple_repeat 2 22 0 1927 176 67 21 chr1 94249274 94249453 -148414900 + L1MEc LINE L1 1850 2063 -4333 373 267 76 0 chr1 94249589 94249694 -148414659 - L2 LINE L2 -38 3275 3163 638 249 65 0 chr1 94250953 94251138 -148413215 + MIR SINE MIR 40 236 -26 1581 268 123 49 chr1 94252218 94252998 -148411355 + L2 LINE L2 1884 2721 -593 323 203 0 0 chr1 94252962 94253021 -148411332 + MIR SINE MIR 163 221 -41 * 693 308 145 17 chr1 94253035 94253357 -148410996 + L2 LINE L2 2922 3292 -21 2131 110 13 10 chr1 94253357 94253657 -148410696 - AluSg SINE Alu -9 301 1 693 308 145 17 chr1 94253657 94253678 -148410675 + L2 LINE L2 3292 3309 -4 716 250 252 24 chr1 94253717 94254186 -148410167 + L2 LINE L2 2716 3310 -3 2130 139 0 13 chr1 94255877 94256193 -148408160 + AluSx SINE Alu 1 312 0 967 231 143 40 chr1 94256403 94256724 -148407629 + MLT1A1 LTR MaLR 12 365 0 1579 143 23 34 chr1 94256867 94257132 -148407221 + AluJo SINE Alu 34 295 -17 29 0 0 0 chr1 94258021 94258050 -148406303 + AT_rich Low_complexity Low_complexity 1 29 0 2416 95 0 0 chr1 94258756 94259060 -148405293 + AluSp SINE Alu 1 304 -9 290 96 0 19 chr1 94259127 94259179 -148405174 + (CA)n Simple_repeat Simple_repeat 1 51 0 311 306 204 19 chr1 94259271 94259477 -148404876 - MIR SINE MIR -16 246 3 286 214 146 0 chr1 94259717 94259806 -148404547 - L2 LINE L2 -3 3269 3168 371 335 57 37 chr1 94260241 94260416 -148403937 + MIR SINE MIR 13 196 -66 2360 94 0 0 chr1 94260416 94260714 -148403639 + AluSx SINE Alu 1 298 -14 371 335 57 37 chr1 94260714 94260783 -148403570 + MIR SINE MIR 196 262 0 211 254 36 18 chr1 94260955 94261010 -148403343 + MIR SINE MIR 34 89 -173 494 79 0 0 chr1 94261010 94261073 -148403280 - AluJb SINE Alu -15 297 235 972 161 0 0 chr1 94261073 94261222 -148403131 - AluJb SINE Alu -163 149 1 208 232 161 0 chr1 94261224 94261280 -148403073 + MIR SINE MIR 81 145 -63 501 302 28 22 chr1 94263014 94263211 -148401142 + MIR SINE MIR 16 215 -47 364 289 98 98 chr1 94265048 94265611 -148398742 + L1M2 LINE L1 777 1339 -5510 23 33 0 0 chr1 94266379 94266409 -148397944 + AT_rich Low_complexity Low_complexity 1 30 0 235 299 103 19 chr1 94266850 94266957 -148397396 + MIR SINE MIR 21 136 -126 2516 113 96 32 chr1 94266991 94267459 -148396894 - LTR21A LTR ERV1 -7 498 1 1607 208 39 36 chr1 94267583 94267972 -148396381 + L1M4 LINE L1 4502 4891 -1255 1127 225 86 0 chr1 94267973 94268240 -148396113 - MER99 DNA DNA -131 697 408 2213 122 0 0 chr1 94268241 94268545 -148395808 - AluSx SINE Alu -8 304 1 6707 126 41 65 chr1 94268609 94269264 -148395089 + Tigger3b DNA MER2_type 15 684 -2344 2325 101 7 0 chr1 94269264 94269571 -148394782 + AluSg SINE Alu 1 309 -1 6707 126 41 65 chr1 94269571 94269638 -148394715 + Tigger3b DNA MER2_type 684 751 -2277 1740 161 7 3 chr1 94269638 94269930 -148394423 + AluJo SINE Alu 1 293 -19 6707 126 41 65 chr1 94269930 94270160 -148394193 + Tigger3b DNA MER2_type 751 985 -2043 2510 59 7 7 chr1 94270160 94270465 -148393888 - AluY SINE Alu -6 305 1 6707 126 41 65 chr1 94270465 94270757 -148393596 + Tigger3b DNA MER2_type 985 1231 0 331 191 124 19 chr1 94270757 94270862 -148393491 - MER99 DNA DNA -554 274 159 34 42 0 0 chr1 94271053 94271101 -148393252 + AT_rich Low_complexity Low_complexity 1 48 0 209 359 43 0 chr1 94271668 94271785 -148392568 - L2 LINE L2 -8 3305 3184 2305 143 27 16 chr1 94271948 94272319 -148392034 + THE1C LTR MaLR 1 375 0 686 235 49 49 chr1 94272522 94272786 -148391567 - L1MC/D LINE L1 -1993 5815 5552 1344 236 95 10 chr1 94272788 94273399 -148390954 - L2 LINE L2 -6 3307 2639 468 293 43 0 chr1 94273401 94273541 -148390812 - L2 LINE L2 -846 2468 2323 710 215 169 23 chr1 94273543 94273804 -148390549 - MER5C DNA MER1_type -1 323 25 306 231 0 51 chr1 94273833 94273911 -148390442 - L2 LINE L2 -966 2348 2275 2073 131 0 7 chr1 94274292 94274583 -148389770 + AluSx SINE Alu 1 289 -23 242 275 110 11 chr1 94274927 94275018 -148389335 - MIR SINE MIR -109 153 54 687 165 91 0 chr1 94276430 94276551 -148387802 + FLAM_C SINE Alu 2 133 0 357 380 76 22 chr1 94276618 94276842 -148387511 - L2 LINE L2 -86 3186 2951 300 301 88 114 chr1 94277277 94278069 -148386284 - L2 LINE L2 -416 2898 2127 1953 76 64 8 chr1 94278428 94278692 -148385661 - AluY SINE Alu -24 287 9 315 292 85 39 chr1 94279701 94279831 -148384522 - L2 LINE L2 0 3272 3137 331 210 25 49 chr1 94279873 94279954 -148384399 + L2 LINE L2 3174 3252 -20 351 78 0 0 chr1 94279956 94280007 -148384346 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 239 333 96 22 chr1 94280670 94280805 -148383548 + MER5A DNA MER1_type 4 148 -41 1040 184 172 0 chr1 94281020 94281379 -148382974 + Charlie4a DNA MER1_type 67 506 -2 261 0 0 0 chr1 94281747 94281776 -148382577 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 777 168 0 0 chr1 94281786 94281917 -148382436 + AluJo/FLAM SINE Alu 3 133 -169 2233 92 3 3 chr1 94281917 94282201 -148382152 + AluSx SINE Alu 1 284 -28 2456 143 20 29 chr1 94282465 94282914 -148381439 - MER65A LTR ERV1 0 445 1 2418 77 0 19 chr1 94283481 94283794 -148380559 - AluY SINE Alu -4 307 1 1818 205 50 26 chr1 94284721 94285180 -148379173 + MLT1D LTR MaLR 36 505 0 262 355 13 0 chr1 94285316 94285392 -148378961 - L2 LINE L2 -47 3225 3149 * 1534 248 58 24 chr1 94285385 94285849 -148378504 + L2 LINE L2 2318 2797 -517 697 272 35 23 chr1 94285989 94286274 -148378079 + MLT1I LTR MaLR 108 549 0 1084 237 206 31 chr1 94286275 94286693 -148377660 + L2 LINE L2 2819 3309 -4 703 88 0 0 chr1 94286747 94286838 -148377515 - AluSg SINE Alu -205 105 15 311 186 17 0 chr1 94286838 94286897 -148377456 + Alu SINE Alu 238 297 -5 2469 76 0 0 chr1 94287147 94287451 -148376902 + AluSg SINE Alu 1 304 -6 808 261 7 66 chr1 94287540 94287714 -148376639 + MIR SINE MIR 7 161 -101 1257 111 55 5 chr1 94287714 94287931 -148376422 + L1MA4 LINE L1 6067 6294 -6 808 261 7 66 chr1 94287931 94288028 -148376325 + MIR SINE MIR 161 262 0 730 268 11 6 chr1 94288253 94288436 -148375917 - MIR SINE MIR -66 196 13 2536 62 3 0 chr1 94289528 94289835 -148374518 + AluSg SINE Alu 1 308 -2 2411 72 7 0 chr1 94289839 94290146 -148374207 + AluY SINE Alu 1 309 -2 250 234 13 26 chr1 94290612 94290689 -148373664 + MARNA DNA Mariner 15 90 -496 909 263 60 18 chr1 94290800 94291085 -148373268 - L2 LINE L2 -467 2847 2551 298 270 0 14 chr1 94291128 94291202 -148373151 + L2 LINE L2 3240 3312 -1 * 597 320 122 27 chr1 94291200 94291765 -148372588 + L2 LINE L2 2447 3064 -249 1271 145 12 46 chr1 94291839 94292080 -148372273 + MER82 DNA MER2_type 30 262 -391 332 242 125 62 chr1 94292113 94292225 -148372128 + L2 LINE L2 3059 3163 -150 888 129 8 0 chr1 94292225 94292357 -148371996 - FLAM_C SINE Alu 0 133 1 332 242 125 62 chr1 94292357 94292484 -148371869 + L2 LINE L2 3163 3313 0 226 299 229 25 chr1 94292898 94293055 -148371298 - MIR SINE MIR -4 258 70 1850 181 17 38 chr1 94293055 94293476 -148370877 - MLT1D LTR MaLR 0 505 94 231 211 0 0 chr1 94293489 94293546 -148370807 + A-rich Low_complexity Low_complexity 1 57 0 458 195 25 51 chr1 94293550 94293611 -148370742 - MLT1D LTR MaLR -388 117 59 2324 94 83 9 chr1 94293611 94293950 -148370403 - THE1B LTR MaLR 0 364 1 458 195 25 51 chr1 94293950 94294006 -148370347 - MLT1D LTR MaLR -446 59 3 572 295 49 45 chr1 94294008 94294232 -148370121 + MIR SINE MIR 13 237 -25 1530 193 18 0 chr1 94294265 94294591 -148369762 + L1ME1 LINE L1 4780 5111 -1035 746 213 134 52 chr1 94294661 94295004 -148369349 + L1ME1 LINE L1 5791 6161 -5 744 220 23 51 chr1 94295329 94295559 -148368794 + MIR SINE MIR 19 240 -22 192 316 0 40 chr1 94296369 94296445 -148367908 - L2 LINE L2 -10 3303 3231 2118 86 69 0 chr1 94297204 94297494 -148366859 - AluY SINE Alu -1 310 1 210 235 107 86 chr1 94297617 94297804 -148366549 - L2 LINE L2 -1791 1523 1333 434 245 103 53 chr1 94297816 94298098 -148366255 + L1ME4a LINE L1 5593 5888 -233 299 195 11 46 chr1 94298131 94298218 -148366135 + L1ME4a LINE L1 5972 6055 -66 1590 166 53 4 chr1 94298809 94299098 -148365255 - AluJb SINE Alu 0 308 7 1308 153 10 5 chr1 94299622 94299824 -148364529 - AluJb SINE Alu -25 287 85 190 319 278 0 chr1 94300037 94300181 -148364172 + MIR SINE MIR 29 212 -50 1939 158 10 0 chr1 94300371 94300675 -148363678 + AluJb SINE Alu 1 307 -5 21 57 0 0 chr1 94300752 94300787 -148363566 + AT_rich Low_complexity Low_complexity 1 35 0 38 61 0 0 chr1 94300840 94300906 -148363447 + AT_rich Low_complexity Low_complexity 1 66 0 243 231 49 89 chr1 94301109 94301334 -148363019 - L1MC/D LINE L1 -1914 5894 5679 301 296 11 0 chr1 94301341 94301429 -148362924 - L1MC4 LINE L1 -1340 6702 6614 218 267 0 47 chr1 94301468 94301554 -148362799 + T-rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr1 94301630 94301652 -148362701 + AT_rich Low_complexity Low_complexity 1 22 0 248 286 69 84 chr1 94302004 94302017 -148362336 - LTR16A1 LTR ERVL 0 457 445 2285 190 17 9 chr1 94302017 94302480 -148361873 + MLT1C LTR MaLR 1 467 0 248 286 69 84 chr1 94302480 94302728 -148361625 - LTR16A1 LTR ERVL -12 445 200 264 342 66 40 chr1 94303481 94303633 -148360720 + L2 LINE L2 2651 2806 -508 1172 264 204 24 chr1 94303736 94304315 -148360038 + L2 LINE L2 2355 3111 -202 2417 97 0 0 chr1 94304315 94304623 -148359730 + AluSc SINE Alu 1 308 -1 1172 264 204 24 chr1 94304623 94304827 -148359526 + L2 LINE L2 3111 3277 -36 204 283 0 17 chr1 94304837 94304897 -148359456 + GA-rich Low_complexity Low_complexity 1 59 0 606 201 75 4 chr1 94305722 94305860 -148358493 - MIR SINE MIR -28 234 89 219 268 28 42 chr1 94306039 94306110 -148358243 - MIR3 SINE MIR -136 72 3 984 263 20 8 chr1 94306257 94306508 -148357845 - MIR SINE MIR 0 262 9 970 163 43 5 chr1 94306706 94306890 -148357463 - MER20 DNA MER1_type 0 219 29 573 202 40 0 chr1 94306923 94307047 -148357306 + L1MC4 LINE L1 7914 8042 0 26 0 0 0 chr1 94307147 94307173 -148357180 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr1 94307404 94307434 -148356919 + AT_rich Low_complexity Low_complexity 1 30 0 465 188 235 20 chr1 94309216 94309365 -148354988 - MER5A DNA MER1_type 0 189 9 330 218 159 4 chr1 94309833 94309952 -148354401 - MER20B DNA MER1_type -18 201 64 357 24 0 0 chr1 94309954 94309996 -148354357 + (CA)n Simple_repeat Simple_repeat 2 43 0 322 316 41 51 chr1 94310911 94311107 -148353246 - MIR SINE MIR -23 239 46 500 228 24 8 chr1 94311327 94311454 -148352899 - MER33 DNA MER1_type -191 133 5 242 256 30 45 chr1 94312158 94312291 -148352062 - Charlie8 DNA MER1_type -2252 165 35 21 0 0 0 chr1 94312419 94312440 -148351913 + AT_rich Low_complexity Low_complexity 1 21 0 243 246 15 0 chr1 94312693 94312758 -148351595 - L2 LINE L2 -60 3253 3188 294 136 37 0 chr1 94313606 94313687 -148350666 + (TA)n Simple_repeat Simple_repeat 2 85 0 231 276 164 26 chr1 94315095 94315211 -148349142 + MIR SINE MIR 20 151 -57 8852 26 1 0 chr1 94316447 94318272 -148346081 + L1PA4 LINE L1 4317 6152 -3 2527 45 0 19 chr1 94318581 94318895 -148345458 + AluY SINE Alu 1 308 -3 630 152 80 32 chr1 94319060 94319185 -148345168 + AluJb SINE Alu 1 131 -181 1437 167 7 20 chr1 94319205 94319505 -148344848 + L1MA4 LINE L1 6005 6300 0 238 283 113 30 chr1 94319611 94319876 -148344477 + L1ME LINE L1 5378 5664 -457 1964 138 3 0 chr1 94320748 94321076 -148343277 + AluSx SINE Alu 1 329 0 2183 93 0 3 chr1 94321263 94321563 -148342790 - AluY SINE Alu -12 299 1 197 280 93 0 chr1 94322508 94322583 -148341770 - MIR SINE MIR -13 249 168 599 80 34 0 chr1 94322608 94322696 -148341657 + AluSp/q SINE Alu 221 311 -2 1242 78 0 7 chr1 94323102 94323255 -148341098 + AluSc SINE Alu 106 257 -52 1492 159 2 6 chr1 94323352 94323689 -148340664 + L1M4 LINE L1 5091 5426 -743 2014 198 11 13 chr1 94323694 94324149 -148340204 + L1MB8 LINE L1 4667 5120 -1026 * 2782 164 52 79 chr1 94324140 94324914 -148339439 + L1MB8 LINE L1 5417 6169 -9 24 32 0 0 chr1 94325140 94325171 -148339182 + AT_rich Low_complexity Low_complexity 1 31 0 948 167 0 6 chr1 94325755 94325923 -148338430 - L1PA16 LINE L1 -7 6159 5993 2312 60 0 0 chr1 94327309 94327642 -148336711 + AluY SINE Alu 1 333 0 28 0 0 0 chr1 94328003 94328031 -148336322 + AT_rich Low_complexity Low_complexity 1 28 0 191 146 24 0 chr1 94328502 94328543 -148335810 + CT-rich Low_complexity Low_complexity 2 43 0 265 260 156 13 chr1 94328619 94328696 -148335657 - L2 LINE L2 -1 3312 3225 287 261 45 11 chr1 94328699 94328787 -148335566 - MIR SINE MIR -76 186 96 662 221 0 0 chr1 94328927 94329076 -148335277 - L1MA10 LINE L1 -3 6331 6183 315 190 58 58 chr1 94329091 94329212 -148335141 - L1ME1 LINE L1 -151 6015 5895 975 151 0 13 chr1 94329212 94329364 -148334989 - FRAM SINE Alu -19 157 8 4332 207 60 21 chr1 94329373 94329923 -148334430 - L1ME1 LINE L1 -279 5887 5360 1914 166 3 0 chr1 94329923 94330224 -148334129 - AluSx SINE Alu -10 302 1 4332 207 60 21 chr1 94330224 94331170 -148333183 - L1ME1 LINE L1 -806 5360 4304 2354 109 3 0 chr1 94331170 94331474 -148332879 - AluSx SINE Alu -7 305 1 4332 207 60 21 chr1 94331474 94331729 -148332624 - L1ME1 LINE L1 -1862 4304 4060 362 322 0 8 chr1 94332075 94332196 -148332157 - MARNA DNA Mariner -89 497 378 623 230 61 126 chr1 94332197 94332475 -148331878 + MIR SINE MIR 2 261 -1 621 269 25 35 chr1 94332462 94332659 -148331694 + MIR SINE MIR 68 262 0 * 1375 175 94 16 chr1 94332800 94333109 -148331244 - MER1B DNA MER1_type -6 333 1 1191 233 40 29 chr1 94333589 94334108 -148330245 - Charlie7 DNA MER1_type 0 2612 2088 341 268 59 26 chr1 94334408 94334561 -148329792 + L1ME4a LINE L1 5963 6120 -1 199 361 107 33 chr1 94335263 94335385 -148328968 - L2 LINE L2 -5 3267 3137 473 243 181 41 chr1 94335465 94335681 -148328672 - MIR SINE MIR 0 262 27 238 237 53 79 chr1 94335814 94335928 -148328425 - L2 LINE L2 -34 3279 3169 501 110 0 0 chr1 94336280 94336362 -148327991 - L1MB3 LINE L1 0 6183 6102 1097 158 24 0 chr1 94336400 94336609 -148327744 - L1MB3 LINE L1 -79 6104 5891 384 275 176 29 chr1 94336677 94336847 -148327506 + L2 LINE L2 2698 2916 -398 2415 105 0 6 chr1 94336847 94337161 -148327192 - AluSx SINE Alu 0 312 1 384 275 176 29 chr1 94337161 94337234 -148327119 + L2 LINE L2 2916 2977 -337 * 528 244 8 30 chr1 94337227 94337358 -148326995 - L2 LINE L2 -1 3312 3185 185 280 110 20 chr1 94337744 94337844 -148326509 + MIR SINE MIR 142 250 -12 194 315 79 34 chr1 94337898 94337987 -148326366 + L2 LINE L2 3137 3229 -43 305 306 54 9 chr1 94338202 94338313 -148326040 + MIR3 SINE MIR 86 201 -7 463 273 143 37 chr1 94339107 94339268 -148325085 + MER5A DNA MER1_type 12 189 0 21 0 0 0 chr1 94339305 94339326 -148325027 + AT_rich Low_complexity Low_complexity 1 21 0 697 327 126 29 chr1 94340147 94341020 -148323333 + L2 LINE L2 2350 3313 0 1737 138 14 18 chr1 94341714 94341990 -148322363 - AluJb SINE Alu -34 278 4 334 263 12 0 chr1 94342381 94342552 -148321801 + (TA)n Simple_repeat Simple_repeat 2 174 0 333 233 0 0 chr1 94343994 94344084 -148320269 + CT-rich Low_complexity Low_complexity 5 94 0 202 348 22 0 chr1 94344253 94344345 -148320008 - L3b LINE CR1 -359 1224 1131 459 205 74 8 chr1 94344567 94344689 -148319664 - FLAM_C SINE Alu -4 139 10 2018 139 0 34 chr1 94344994 94345317 -148319036 + AluJb SINE Alu 1 312 0 512 282 26 32 chr1 94347592 94347748 -148316605 + MIR3 SINE MIR 17 171 -37 597 12 24 12 chr1 94347808 94347891 -148316462 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 2362 86 10 0 chr1 94348330 94348631 -148315722 + AluSp SINE Alu 3 306 -7 21 57 0 0 chr1 94349037 94349072 -148315281 + AT_rich Low_complexity Low_complexity 1 35 0 366 234 19 28 chr1 94349305 94349412 -148314941 + MIR SINE MIR 138 243 -19 204 150 25 0 chr1 94349853 94349893 -148314460 + (CCTG)n Simple_repeat Simple_repeat 3 43 0 586 238 90 27 chr1 94350633 94350932 -148313421 + L1M4 LINE L1 3768 4085 -2061 286 346 74 6 chr1 94351385 94351547 -148312806 + MIR SINE MIR 63 235 -27 2051 268 92 29 chr1 94351559 94352344 -148312009 + L2 LINE L2 2119 2952 -362 1018 186 0 0 chr1 94352402 94352563 -148311790 - FRAM SINE Alu -16 160 1 190 139 56 0 chr1 94352563 94352599 -148311754 - L2 LINE L2 -9 3304 3267 * 316 245 186 0 chr1 94352596 94352698 -148311655 - L2 LINE L2 -233 3080 2960 184 271 68 0 chr1 94352874 94352933 -148311420 + MIR SINE MIR 190 252 -10 2254 123 3 0 chr1 94353052 94353361 -148310992 - AluSx SINE Alu 0 312 3 402 278 249 34 chr1 94354191 94354396 -148309957 + MIR SINE MIR 5 253 -9 228 35 0 0 chr1 94354429 94354458 -148309895 + (CA)n Simple_repeat Simple_repeat 1 29 0 2319 118 0 3 chr1 94355606 94355919 -148308434 + AluSq SINE Alu 1 312 -1 1355 163 9 9 chr1 94356068 94356295 -148308058 + AluSg/x SINE Alu 80 306 -6 372 248 108 8 chr1 94356517 94356646 -148307707 + MIR SINE MIR 79 220 -42 31 26 0 0 chr1 94356654 94356692 -148307661 + AT_rich Low_complexity Low_complexity 1 38 0 907 132 0 0 chr1 94356820 94356949 -148307404 + AluSq/x SINE Alu 1 129 -183 405 208 14 90 chr1 94357516 94357660 -148306693 + MLT1J2 LTR MaLR 67 199 -251 257 229 33 25 chr1 94357712 94357808 -148306545 + MLT1I LTR MaLR 316 401 -8 393 332 91 15 chr1 94358084 94358358 -148305995 + L2 LINE L2 2670 2964 -350 5214 160 37 1 chr1 94358481 94359627 -148304726 + L1MA4 LINE L1 5113 6294 -6 1583 236 119 49 chr1 94359819 94360296 -148304057 + MLT1G1 LTR MaLR 1 443 -152 234 0 0 0 chr1 94360296 94360322 -148304031 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1963 89 0 86 chr1 94360330 94360633 -148303720 - AluSx SINE Alu -35 277 1 1583 236 119 49 chr1 94360633 94360700 -148303653 + MLT1G1 LTR MaLR 449 593 -2 378 311 0 0 chr1 94360703 94360806 -148303547 + MIR SINE MIR 159 261 -1 802 217 26 49 chr1 94360825 94361051 -148303302 - MLT1D LTR MaLR -272 233 13 1371 205 147 30 chr1 94361578 94362007 -148302346 - MLT1D LTR MaLR -26 479 1 242 186 0 71 chr1 94362233 94362303 -148302050 + A-rich Low_complexity Low_complexity 4 68 0 348 319 105 5 chr1 94362631 94362914 -148301439 + HAL1b LINE L1 1115 1265 -83 6311 63 23 5 chr1 94363287 94364172 -148300181 - L1PA7 LINE L1 0 6154 5254 2072 228 79 23 chr1 94364186 94365211 -148299142 - L1ME LINE L1 -438 5728 4640 180 0 0 0 chr1 94365890 94365910 -148298443 + (T)n Simple_repeat Simple_repeat 1 20 0 1794 169 60 58 chr1 94366939 94367370 -148296983 - MSTB1 LTR MaLR 0 432 1 265 170 0 0 chr1 94367505 94367552 -148296801 - MER113 DNA MER1_type? -334 187 141 1687 118 13 0 chr1 94367701 94367930 -148296423 + AluSx SINE Alu 63 294 -18 276 287 37 18 chr1 94368347 94368511 -148295842 + L1MC4 LINE L1 7864 8030 -12 374 221 134 31 chr1 94369772 94369899 -148294454 - L2 LINE L2 0 3313 3174 201 74 0 0 chr1 94369899 94369926 -148294427 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 417 273 175 21 chr1 94370163 94370357 -148293996 - L2 LINE L2 -252 3061 2838 199 279 306 16 chr1 94370407 94370590 -148293763 - L2 LINE L2 -649 2665 2430 367 205 162 8 chr1 94370975 94371092 -148293261 - L1ME3 LINE L1 -10 6152 6018 22 35 0 0 chr1 94371350 94371379 -148292974 + AT_rich Low_complexity Low_complexity 1 29 0 1562 90 0 0 chr1 94371508 94371709 -148292644 - AluY SINE Alu -6 305 105 1955 76 23 105 chr1 94371752 94372094 -148292259 + AluYb8 SINE Alu 2 315 -3 487 225 278 0 chr1 94372271 94372444 -148291909 + L2 LINE L2 2393 2613 -701 563 274 35 30 chr1 94372444 94372674 -148291679 + HAL1 LINE L1 1511 1741 -766 387 141 0 0 chr1 94372681 94372745 -148291608 + (A)n Simple_repeat Simple_repeat 1 64 0 723 140 7 77 chr1 94373029 94373172 -148291181 + FLAM_C SINE Alu 1 133 0 924 126 0 15 chr1 94373937 94374072 -148290281 + FLAM_C SINE Alu 1 133 0 26 0 0 0 chr1 94374541 94374567 -148289786 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr1 94374723 94374768 -148289585 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr1 94375552 94375578 -148288775 + AT_rich Low_complexity Low_complexity 1 26 0 2291 94 3 0 chr1 94375768 94376067 -148288286 + AluSx SINE Alu 1 300 -12 2256 127 7 0 chr1 94379102 94379409 -148284944 + AluSx SINE Alu 1 309 -3 2015 100 0 4 chr1 94380765 94381034 -148283319 - AluSg SINE Alu -14 296 29 306 0 0 0 chr1 94381102 94381136 -148283217 + (TA)n Simple_repeat Simple_repeat 1 34 0 493 313 100 21 chr1 94381140 94381380 -148282973 - MIR SINE MIR 0 262 4 199 348 84 28 chr1 94381559 94381737 -148282616 - L2 LINE L2 -799 2515 2328 502 303 72 19 chr1 94381750 94381958 -148282395 - MIR SINE MIR -6 256 38 21 36 0 0 chr1 94382413 94382441 -148281912 + AT_rich Low_complexity Low_complexity 1 28 0 1887 146 10 0 chr1 94382607 94382895 -148281458 + AluSx SINE Alu 1 291 -21 215 170 0 21 chr1 94383227 94383274 -148281079 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1252 144 4 86 chr1 94383520 94383713 -148280640 - AluJo SINE Alu -6 306 135 2015 126 14 3 chr1 94383713 94384007 -148280346 + AluSx SINE Alu 1 297 -15 1252 144 4 86 chr1 94384007 94384056 -148280297 - AluJo SINE Alu -177 135 84 247 416 29 10 chr1 94384103 94384312 -148280041 - L2 LINE L2 -1379 1935 1723 2060 136 0 16 chr1 94384583 94384899 -148279454 + AluJb SINE Alu 1 311 -1 283 182 10 91 chr1 94384928 94385027 -148279326 + L1ME4a LINE L1 5596 5686 -435 1207 136 37 5 chr1 94385127 94385318 -148279035 - AluJb SINE Alu -29 283 87 190 356 41 34 chr1 94385340 94385486 -148278867 + MIR SINE MIR 15 161 -101 2121 124 0 7 chr1 94385488 94385786 -148278567 + AluSx SINE Alu 2 297 -15 333 220 114 15 chr1 94386304 94386436 -148277917 + L1ME4a LINE L1 5966 6110 -11 1329 199 98 7 chr1 94387769 94388046 -148276307 - AluJo SINE Alu -10 302 1 971 175 44 0 chr1 94388146 94388329 -148276024 + MER46A DNA MER2_type 4 194 -42 975 254 46 13 chr1 94388329 94388636 -148275717 - L1MC4a LINE L1 -1901 5907 5591 496 322 87 60 chr1 94388636 94389117 -148275236 - L2 LINE L2 -832 2482 1989 246 275 108 33 chr1 94389186 94389306 -148275047 + MER5B DNA MER1_type 1 129 -49 1046 334 70 35 chr1 94389406 94390151 -148274202 - L2 LINE L2 -1406 1908 1138 1851 248 47 6 chr1 94390155 94390687 -148273666 + L1MEc LINE L1 42 595 -5801 1719 138 71 78 chr1 94390689 94391151 -148273202 + MLT1C LTR MaLR 9 467 0 1627 225 102 24 chr1 94391158 94391775 -148272578 + L1MEc LINE L1 590 1254 -5142 561 211 34 84 chr1 94391812 94392110 -148272243 + L1MEc LINE L1 2553 2835 -3380 1851 131 59 3 chr1 94392871 94393161 -148271192 + AluSx SINE Alu 1 306 -6 22 70 0 0 chr1 94393720 94393763 -148270590 + AT_rich Low_complexity Low_complexity 1 43 0 510 241 59 25 chr1 94394353 94394556 -148269797 + L1MC5 LINE L1 7716 7925 -36 297 344 160 20 chr1 94394991 94395441 -148268912 + L2 LINE L2 2261 2773 -541 306 302 95 16 chr1 94396264 94396390 -148267963 + MIR SINE MIR 13 148 -114 22 0 0 0 chr1 94396520 94396542 -148267811 + AT_rich Low_complexity Low_complexity 1 22 0 2253 91 10 10 chr1 94398062 94398358 -148265995 + AluSg SINE Alu 1 296 -14 2246 117 3 0 chr1 94398793 94399092 -148265261 - AluSx SINE Alu -12 300 1 441 282 0 30 chr1 94399092 94399214 -148265139 - MIR3 SINE MIR -57 151 32 22 56 0 0 chr1 94399266 94399302 -148265051 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr1 94401037 94401064 -148263289 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr1 94401763 94401792 -148262561 + AT_rich Low_complexity Low_complexity 1 29 0 328 206 63 0 chr1 94401827 94401890 -148262463 + L2 LINE L2 3247 3313 0 351 318 95 19 chr1 94402037 94402248 -148262105 + L1ME4a LINE L1 5718 5944 -177 1334 140 77 73 chr1 94402252 94402538 -148261815 + AluJb SINE Alu 11 297 -15 236 165 21 41 chr1 94402817 94402914 -148261439 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 8088 21 9 0 chr1 94403049 94404053 -148260300 - L1PA3 LINE L1 -1596 4550 3538 7525 27 6 0 chr1 94404053 94405664 -148258689 + L1PA3 LINE L1 4535 6152 -3 844 285 161 20 chr1 94406145 94406549 -148257804 - LTR16C LTR ERVL -30 461 1 261 190 0 0 chr1 94406721 94406779 -148257574 - MER116 DNA Mariner -22 58 1 180 0 0 0 chr1 94407053 94407073 -148257280 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1939 167 3 0 chr1 94407196 94407495 -148256858 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr1 94408467 94408490 -148255863 + AT_rich Low_complexity Low_complexity 1 23 0 191 360 80 0 chr1 94409045 94409120 -148255233 - L2 LINE L2 -41 3231 3151 2391 87 0 0 chr1 94409120 94409419 -148254934 + AluSg SINE Alu 1 299 -11 1378 158 0 10 chr1 94409853 94410062 -148254291 + AluJo SINE Alu 85 291 -21 24 0 0 0 chr1 94410117 94410141 -148254212 + AT_rich Low_complexity Low_complexity 1 24 0 298 289 255 7 chr1 94410318 94410467 -148253886 - MIR SINE MIR -70 192 7 300 345 46 0 chr1 94410642 94410729 -148253624 - MIR SINE MIR -147 115 25 1706 172 3 24 chr1 94411273 94411570 -148252783 - AluJb SINE Alu -21 291 1 28 48 0 0 chr1 94411685 94411727 -148252626 + AT_rich Low_complexity Low_complexity 1 42 0 291 147 78 10 chr1 94412068 94412170 -148252183 + (TA)n Simple_repeat Simple_repeat 2 110 0 2476 54 0 0 chr1 94412522 94412816 -148251537 + AluY SINE Alu 1 294 -17 397 210 150 8 chr1 94413501 94413668 -148250685 - MIR SINE MIR -30 232 4 323 206 366 8 chr1 94413919 94414050 -148250303 + MER5A DNA MER1_type 12 189 0 2415 50 0 0 chr1 94415288 94415596 -148248757 - AluY SINE Alu 0 308 1 239 241 101 25 chr1 94415833 94415912 -148248441 + MIR SINE MIR 52 136 -126 306 283 141 96 chr1 94418040 94418737 -148245616 + L1M2 LINE L1 631 1358 -5491 232 242 0 0 chr1 94418811 94418877 -148245476 + (TCG)n Simple_repeat Simple_repeat 1 66 0 324 271 103 114 chr1 94418933 94419284 -148245069 + L1M2 LINE L1 674 1020 -5829 32 43 0 0 chr1 94419434 94419480 -148244873 + GC_rich Low_complexity Low_complexity 1 46 0 304 231 39 87 chr1 94420368 94420472 -148243881 + L2 LINE L2 3215 3313 0 1571 189 0 75 chr1 94420719 94421052 -148243301 + AluJb SINE Alu 1 308 -4 220 365 25 95 chr1 94421052 94421326 -148243027 + L2 LINE L2 3014 3268 -4 226 132 0 0 chr1 94422096 94422134 -148242219 + L1ME3A LINE L1 6128 6165 -5 1830 166 7 0 chr1 94422934 94423218 -148241135 + AluSx SINE Alu 1 286 -26 2396 74 13 16 chr1 94423228 94423540 -148240813 + AluY SINE Alu 1 311 0 836 225 65 32 chr1 94424141 94424911 -148239442 + L1MC5 LINE L1 7056 7913 -48 1211 257 171 32 chr1 94425141 94425709 -148238644 + L2 LINE L2 438 1084 -2230 867 133 31 0 chr1 94425724 94425852 -148238501 - FLAM_C SINE Alu -11 132 1 824 274 168 32 chr1 94425854 94426580 -148237773 + L2 LINE L2 1075 3189 -124 1328 179 63 50 chr1 94426766 94426799 -148237554 + L1MB7 LINE L1 5843 5874 -310 1740 160 56 3 chr1 94426799 94427087 -148237266 + AluJb SINE Alu 1 303 -9 1328 179 63 50 chr1 94427087 94427372 -148236981 + L1MB7 LINE L1 5874 6165 -19 1503 155 0 8 chr1 94427402 94427641 -148236712 - AluSg/x SINE Alu -2 308 72 1139 224 48 24 chr1 94427833 94428168 -148236185 + MER2 DNA MER2_type 2 344 0 2427 49 0 3 chr1 94428739 94429043 -148235310 + AluY SINE Alu 1 303 -8 2108 88 47 0 chr1 94429201 94429498 -148234855 - AluY SINE Alu 0 311 1 1786 107 4 8 chr1 94429636 94429878 -148234475 + AluSg/x SINE Alu 65 305 -7 1634 133 47 36 chr1 94430363 94430642 -148233711 + AluJo SINE Alu 3 284 -28 2530 49 13 0 chr1 94430803 94431110 -148233243 - AluY SINE Alu 0 311 1 246 186 71 43 chr1 94431290 94431360 -148232993 - Charlie8 DNA MER1_type 0 2417 2346 301 342 37 47 chr1 94432870 94433060 -148231293 + L1MDa LINE L1 117 304 -6236 530 242 0 128 chr1 94433597 94433816 -148230537 + L1MDa LINE L1 909 1099 -5444 821 181 0 0 chr1 94433821 94433948 -148230405 + FLAM_C SINE Alu 1 127 -16 1278 228 37 21 chr1 94433953 94434306 -148230047 + L1MDa LINE L1 1086 1447 -5096 825 183 23 8 chr1 94434306 94434437 -148229916 + FLAM_C SINE Alu 1 133 0 1278 228 37 21 chr1 94434437 94434465 -148229888 + L1MDa LINE L1 1447 1473 -5070 206 152 0 22 chr1 94434465 94434511 -148229842 + GA-rich Low_complexity Low_complexity 1 45 0 239 307 0 0 chr1 94434516 94434604 -148229749 + L1MDa LINE L1 1437 1524 -5019 1232 181 29 0 chr1 94434604 94434836 -148229517 + AluJb SINE Alu 85 312 0 1487 223 106 32 chr1 94434838 94435331 -148229022 + L1MDa LINE L1 1516 2044 -4496 2077 134 0 0 chr1 94435390 94435682 -148228671 + AluJb SINE Alu 12 303 -9 1032 257 61 44 chr1 94435682 94436043 -148228310 - L1MDa LINE L1 -4006 2534 2162 2388 93 3 0 chr1 94436043 94436355 -148227998 - AluSq SINE Alu 0 313 1 1032 257 61 44 chr1 94436355 94436468 -148227885 - L1MDa LINE L1 -4378 2162 2052 1071 287 87 10 chr1 94436497 94436898 -148227455 + ERVL LTR ERVL 4206 4637 -1127 1062 174 0 0 chr1 94436898 94437076 -148227277 + AluJb SINE Alu 131 308 -4 1209 272 17 70 chr1 94437077 94437492 -148226861 + ERVL LTR ERVL 4633 5025 -739 236 255 96 32 chr1 94437522 94437616 -148226737 - MLT1I LTR MaLR -29 380 281 379 211 40 0 chr1 94437693 94437769 -148226584 - MLT1H LTR MaLR -341 208 130 313 282 205 0 chr1 94437960 94438116 -148226237 - MIR SINE MIR -6 256 69 229 325 33 8 chr1 94438372 94438492 -148225861 - L2 LINE L2 -263 3009 2887 1832 164 10 10 chr1 94439491 94439795 -148224558 - AluJo SINE Alu -8 304 1 400 265 271 16 chr1 94439871 94439985 -148224368 + L2 LINE L2 2725 2809 -504 2051 132 114 18 chr1 94439985 94440318 -148224035 - MLT1A1 LTR MaLR 0 365 1 400 265 271 16 chr1 94440318 94440603 -148223750 + L2 LINE L2 2809 3219 -94 351 0 0 0 chr1 94440698 94440737 -148223616 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 3193 158 30 4 chr1 94440914 94441413 -148222940 - MER41E LTR ERV1 0 512 1 372 237 92 0 chr1 94444532 94444663 -148219690 - L1ME4a LINE L1 -4 6117 5975 810 296 59 51 chr1 94444946 94445452 -148218901 - L1ME4a LINE L1 -1985 5823 5314 1144 109 6 0 chr1 94445663 94445819 -148218534 + AluSp SINE Alu 137 293 -20 1548 149 11 0 chr1 94445855 94446117 -148218236 - L1MA8 LINE L1 -2 6289 6025 1879 160 13 20 chr1 94446139 94446445 -148217908 - AluJo SINE Alu -8 304 1 446 286 40 18 chr1 94446764 94446988 -148217365 - L1ME4a LINE L1 -1310 4836 4608 796 257 44 10 chr1 94447032 94447095 -148217258 + MLT1J LTR MaLR 1 60 -451 1821 183 0 7 chr1 94447095 94447395 -148216958 + AluJo SINE Alu 1 298 -14 796 257 44 10 chr1 94447395 94447537 -148216816 + MLT1J LTR MaLR 60 213 -298 3204 102 18 60 chr1 94447544 94448045 -148216308 + MER1A DNA MER1_type 50 529 0 789 241 197 41 chr1 94448052 94448417 -148215936 + LTR16A LTR ERVL 19 440 -10 618 164 129 13 chr1 94448422 94448607 -148215746 + MLT1J LTR MaLR 199 463 -48 26 30 0 0 chr1 94448747 94448780 -148215573 + AT_rich Low_complexity Low_complexity 1 33 0 517 125 11 23 chr1 94448812 94448900 -148215453 - AluJ/FRAM SINE Alu 0 312 226 8105 170 20 9 chr1 94448952 94449554 -148214799 - L1PA16 LINE L1 -3 6163 5569 2148 121 6 13 chr1 94449554 94449867 -148214486 - AluSx SINE Alu -1 311 1 8105 170 20 9 chr1 94449867 94451557 -148212796 - L1PA16 LINE L1 -597 5569 3786 1379 195 101 0 chr1 94451557 94451824 -148212529 - AluJb SINE Alu -18 294 1 8105 170 20 9 chr1 94451824 94451925 -148212428 - L1PA16 LINE L1 -2380 3786 3688 1198 168 0 0 chr1 94451971 94452144 -148212209 - FAM SINE Alu -2 173 1 1998 124 32 3 chr1 94452152 94452434 -148211919 - AluSx SINE Alu -22 290 1 583 218 112 65 chr1 94452452 94452622 -148211731 + MIR SINE MIR 5 182 -80 612 217 60 36 chr1 94452622 94452788 -148211565 - MER93b LTR ERV1 0 373 204 791 167 0 0 chr1 94452790 94452943 -148211410 + FLAM_C SINE Alu 2 154 0 229 224 0 0 chr1 94452944 94452993 -148211360 + (TA)n Simple_repeat Simple_repeat 1 49 0 765 150 21 96 chr1 94452994 94453073 -148211280 - MER93b LTR ERV1 -196 177 94 1731 146 0 0 chr1 94453073 94453326 -148211027 - AluSx SINE Alu -11 301 49 765 150 21 96 chr1 94453326 94453433 -148210920 - MER93b LTR ERV1 -279 94 5 369 173 37 12 chr1 94453439 94453520 -148210833 + MIR SINE MIR 180 262 0 434 311 95 52 chr1 94453687 94453993 -148210360 - MLT1I LTR MaLR -62 347 29 477 289 28 0 chr1 94454274 94454416 -148209937 - MIR SINE MIR -107 155 10 226 254 16 16 chr1 94454520 94454583 -148209770 - MIR3 SINE MIR -8 200 138 265 326 128 27 chr1 94454632 94454819 -148209534 - MLT1J LTR MaLR -69 442 237 329 161 0 0 chr1 94455398 94455454 -148208899 - MER92C LTR ERV1 -8 546 491 425 193 79 89 chr1 94455513 94455615 -148208738 - MER92B LTR ERV1 -375 179 66 2271 116 0 0 chr1 94455615 94455918 -148208435 - AluSx SINE Alu -7 305 3 425 193 79 89 chr1 94455918 94455984 -148208369 - MER92B LTR ERV1 -488 66 1 1805 256 65 22 chr1 94456003 94456605 -148207748 - L1MC4a LINE L1 -1773 6035 5408 1374 154 6 113 chr1 94456651 94456995 -148207358 + AluJo SINE Alu 1 307 -5 260 173 27 80 chr1 94457149 94457224 -148207129 + MER103 DNA DNA 17 87 -79 377 279 0 25 chr1 94458633 94458755 -148205598 + L1ME4a LINE L1 5659 5777 -344 874 223 0 32 chr1 94458778 94458800 -148205553 - AluJo SINE Alu -31 281 260 2988 117 11 28 chr1 94458800 94459196 -148205157 + MSTA LTR MaLR 1 391 -37 2643 45 0 3 chr1 94459196 94459506 -148204847 - AluY SINE Alu -2 309 1 2988 117 11 28 chr1 94459506 94459544 -148204809 + MSTA LTR MaLR 391 428 0 874 223 0 32 chr1 94459544 94459678 -148204675 - AluJo SINE Alu -52 260 130 1367 86 16 5 chr1 94459690 94459877 -148204476 - AluSc SINE Alu -32 277 89 838 174 8 0 chr1 94459890 94460022 -148204331 - AluJo SINE Alu -169 133 1 2196 109 3 0 chr1 94460043 94460345 -148204008 - AluSx SINE Alu -9 303 1 2233 107 3 3 chr1 94460350 94460649 -148203704 - AluSc SINE Alu -10 299 1 401 221 133 25 chr1 94460681 94460839 -148203514 + L1ME4a LINE L1 5945 6119 -2 908 183 168 0 chr1 94463206 94463408 -148200945 + MIR SINE MIR 24 259 -3 327 286 141 41 chr1 94463852 94464142 -148200211 - L2 LINE L2 -963 2351 2033 356 141 205 26 chr1 94464337 94464415 -148199938 - L2 LINE L2 -7 3306 3215 26 0 0 0 chr1 94464883 94464909 -148199444 + AT_rich Low_complexity Low_complexity 1 26 0 1181 158 5 45 chr1 94465405 94465600 -148198753 - AluJo SINE Alu -13 299 98 2464 141 5 16 chr1 94465600 94465968 -148198385 - THE1B LTR MaLR 0 364 1 12578 92 8 1 chr1 94465968 94467537 -148196816 - THE1B-int LTR MaLR 0 1580 1 2230 109 59 42 chr1 94467537 94467895 -148196458 - THE1B LTR MaLR 0 364 1 1181 158 5 45 chr1 94467895 94467919 -148196434 - AluJo SINE Alu -211 101 87 842 173 0 0 chr1 94468860 94468987 -148195366 - FLAM_C SINE Alu -16 127 1 585 93 264 0 chr1 94469219 94469348 -148195005 - MER53 DNA DNA 0 189 27 185 358 0 0 chr1 94469458 94469525 -148194828 - L2 LINE L2 -220 3052 2986 426 306 155 5 chr1 94469532 94469738 -148194615 + MIR SINE MIR 14 250 -12 1650 52 16 0 chr1 94470657 94470851 -148193502 - MER107 DNA MER1_type 0 197 1 2391 90 0 0 chr1 94472026 94472326 -148192027 - AluY SINE Alu -10 301 2 2459 64 0 0 chr1 94472906 94473201 -148191152 + AluSg SINE Alu 1 295 -15 288 257 51 91 chr1 94473853 94474028 -148190325 + MIR SINE MIR 46 213 -49 211 254 30 0 chr1 94474036 94474103 -148190250 + MIR SINE MIR 66 134 -128 2568 61 0 0 chr1 94474170 94474481 -148189872 + AluY SINE Alu 1 311 0 225 336 129 21 chr1 94475196 94475336 -148189017 - L2 LINE L2 -564 2750 2596 2208 79 3 49 chr1 94475475 94475803 -148188550 + AluSq SINE Alu 1 313 0 208 297 55 11 chr1 94478003 94478094 -148186259 + L2 LINE L2 2187 2281 -1033 395 291 18 18 chr1 94478461 94478571 -148185782 + L2 LINE L2 3155 3264 -8 1525 224 93 49 chr1 94478679 94479124 -148185229 - MER77 LTR ERV1 -17 588 196 979 293 139 5 chr1 94479329 94479738 -148184615 + L2 LINE L2 1881 2344 -970 1181 223 19 7 chr1 94479781 94480050 -148184303 - L1MC4 LINE L1 -529 7513 7242 1672 164 49 0 chr1 94480051 94480338 -148184015 - AluSx SINE Alu -6 306 6 1868 150 85 12 chr1 94480343 94480683 -148183670 - L1MC4 LINE L1 -960 7082 6718 496 295 126 29 chr1 94480686 94480964 -148183389 + L2 LINE L2 2918 3222 -91 335 294 88 76 chr1 94480936 94481166 -148183187 + MIR SINE MIR 8 243 -19 * 624 229 78 18 chr1 94481166 94481332 -148183021 - MER5B DNA MER1_type -2 176 1 704 211 80 13 chr1 94481607 94481848 -148182505 + L1M4 LINE L1 4946 5191 -955 579 137 63 0 chr1 94481952 94482047 -148182306 + HY1 scRNA scRNA 12 112 0 1861 142 38 26 chr1 94482053 94482415 -148181938 + L1MC2 LINE L1 5815 6184 -160 2428 97 0 0 chr1 94482415 94482725 -148181628 + AluSx SINE Alu 1 310 -2 2457 78 0 3 chr1 94482729 94483037 -148181316 + AluY SINE Alu 1 307 -4 2304 123 9 23 chr1 94483366 94483715 -148180638 - MER2 DNA MER2_type 0 344 1 542 240 64 35 chr1 94483734 94483905 -148180448 - MER104 DNA MER2_type 0 180 5 387 297 36 29 chr1 94483906 94484044 -148180309 + L2 LINE L2 3133 3271 -1 249 290 242 34 chr1 94484863 94485156 -148179197 - L2 LINE L2 -1 3271 2918 520 353 89 39 chr1 94485956 94486497 -148177856 - L3 LINE CR1 -14 1563 996 219 303 0 0 chr1 94486656 94486722 -148177631 + L2 LINE L2 3202 3267 -5 283 289 35 9 chr1 94486785 94486899 -148177454 - L3 LINE CR1 -644 933 817 500 240 163 70 chr1 94486899 94487339 -148177014 - MLT1H LTR MaLR -19 530 1 272 339 113 5 chr1 94487490 94487676 -148176677 - MIR SINE MIR -55 207 2 246 207 0 0 chr1 94489082 94489140 -148175213 + (CA)n Simple_repeat Simple_repeat 1 58 0 203 280 150 0 chr1 94489659 94489759 -148174594 - L2 LINE L2 -276 3037 2923 626 240 40 7 chr1 94490249 94490399 -148173954 + MIR SINE MIR 108 262 0 275 267 109 24 chr1 94491871 94492077 -148172276 + L2 LINE L2 2952 3254 -18 692 194 118 43 chr1 94492212 94492398 -148171955 - MIR SINE MIR 0 262 63 2039 131 0 22 chr1 94492461 94492773 -148171580 - L1MB3 LINE L1 -9 6174 5870 22 56 0 0 chr1 94492781 94492817 -148171536 + AT_rich Low_complexity Low_complexity 1 36 0 338 282 35 31 chr1 94492903 94493095 -148171258 - L1MC4a LINE L1 -104 6017 5821 255 172 138 0 chr1 94493112 94493170 -148171183 + L1ME3A LINE L1 6097 6162 -8 693 200 130 33 chr1 94493200 94493415 -148170938 - L1ME3A LINE L1 -8 6162 5927 744 184 52 81 chr1 94493428 94493626 -148170727 - AluJo SINE Alu 0 310 118 240 279 51 0 chr1 94493628 94493707 -148170646 - L1ME3A LINE L1 -248 5922 5840 387 248 124 29 chr1 94495740 94495877 -148168476 - MIR3 SINE MIR -7 201 52 2379 100 3 0 chr1 94496299 94496609 -148167744 + AluSp SINE Alu 1 311 -2 382 269 24 24 chr1 94497023 94497146 -148167207 - MIR3 SINE MIR -6 202 79 494 274 107 12 chr1 94497846 94498067 -148166286 - MIR SINE MIR -10 252 13 188 0 74 0 chr1 94498250 94498277 -148166076 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr1 94498350 94498373 -148165980 + (TTTCC)n Simple_repeat Simple_repeat 2 24 0 23 92 0 0 chr1 94499592 94499657 -148164696 + AT_rich Low_complexity Low_complexity 1 65 0 2508 69 0 7 chr1 94501362 94501668 -148162685 - AluY SINE Alu -7 304 1 338 293 106 16 chr1 94501699 94501822 -148162531 - L2 LINE L2 -2 3270 3137 261 286 26 26 chr1 94501878 94501955 -148162398 - MIR SINE MIR -74 134 58 201 279 0 25 chr1 94502150 94502229 -148162124 + MIR SINE MIR 156 232 -30 347 241 37 19 chr1 94502418 94502526 -148161827 - MIR SINE MIR -12 250 141 530 295 72 28 chr1 94502583 94502834 -148161519 + MIR SINE MIR 1 262 0 2216 268 101 38 chr1 94503081 94503164 -148161189 + L1MEd LINE L1 56 132 -5987 360 0 0 0 chr1 94503164 94503204 -148161149 + (CA)n Simple_repeat Simple_repeat 2 41 0 2216 268 101 38 chr1 94503204 94504118 -148160235 + L1MEd LINE L1 132 1116 -5003 1431 280 156 41 chr1 94504314 94505186 -148159167 - L2 LINE L2 -62 3251 2285 1617 157 58 17 chr1 94506200 94506493 -148157860 + AluSx SINE Alu 1 305 -7 36 40 0 0 chr1 94507250 94507300 -148157053 + AT_rich Low_complexity Low_complexity 1 50 0 722 307 134 20 chr1 94507524 94508022 -148156331 - L1MC4a LINE L1 -1873 5935 5381 1090 95 0 95 chr1 94508295 94508474 -148155879 - L1PA8A LINE L1 0 6131 5970 358 257 35 35 chr1 94509228 94509341 -148155012 - L2 LINE L2 0 3313 3201 716 323 116 34 chr1 94509366 94509952 -148154401 - L2 LINE L2 -530 2784 2151 2272 102 3 13 chr1 94510709 94511014 -148153339 - AluSg SINE Alu -8 302 1 203 192 0 19 chr1 94512142 94512194 -148152159 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 183 129 0 0 chr1 94512217 94512248 -148152105 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 31 0 0 chr1 94512590 94512622 -148151731 + AT_rich Low_complexity Low_complexity 1 32 0 879 268 193 80 chr1 94512988 94513353 -148151000 + L3 LINE CR1 725 1047 -530 2249 118 0 0 chr1 94513353 94513659 -148150694 + AluSg SINE Alu 1 306 -4 879 268 193 80 chr1 94513659 94514048 -148150305 + L3 LINE CR1 1047 1565 -12 23 33 0 0 chr1 94514241 94514271 -148150082 + AT_rich Low_complexity Low_complexity 1 30 0 529 310 134 13 chr1 94514547 94514786 -148149567 - MLT1K LTR MaLR -140 448 181 1626 218 39 36 chr1 94515517 94515929 -148148424 + MLT2D LTR ERVL 1 413 -1 21 0 0 0 chr1 94515973 94515994 -148148359 + AT_rich Low_complexity Low_complexity 1 21 0 614 229 77 29 chr1 94516624 94516794 -148147559 + MLT1J LTR MaLR 1 178 -333 23 33 0 0 chr1 94518506 94518536 -148145817 + AT_rich Low_complexity Low_complexity 1 30 0 2603 118 23 8 chr1 94518651 94519048 -148145305 + MSTA LTR MaLR 1 403 -25 412 264 35 75 chr1 94519061 94519217 -148145136 + MIR SINE MIR 26 175 -33 887 253 120 33 chr1 94519224 94519524 -148144829 + HsTC2a DNA Tc2 64 389 -355 1256 224 34 31 chr1 94519526 94519853 -148144500 + L1M2a LINE L1 -779 363 -5950 5862 212 71 70 chr1 94520130 94522092 -148142261 + L1M2a LINE L1 800 2555 -3827 1981 158 0 13 chr1 94522092 94522271 -148142082 - AluSx SINE Alu 0 312 137 2128 97 52 3 chr1 94522271 94522561 -148141792 - AluSq SINE Alu -9 304 1 1981 158 0 13 chr1 94522561 94522697 -148141656 - AluSx SINE Alu -175 137 1 5862 212 71 70 chr1 94522697 94524308 -148140045 + L1M2a LINE L1 2555 4164 -2218 45332 36 1 3 chr1 94524312 94530470 -148133883 + L1PA3 LINE L1 7 6155 0 4865 145 90 26 chr1 94530476 94530875 -148133478 + L1M2a LINE L1 4148 4520 -1862 2426 83 0 0 chr1 94530875 94531175 -148133178 - AluY SINE Alu -10 301 2 4865 145 90 26 chr1 94531175 94531764 -148132589 + L1M2a LINE L1 4520 5199 -1183 317 263 131 51 chr1 94532773 94532948 -148131405 + MLT1K LTR MaLR 376 564 -24 1864 151 46 109 chr1 94532982 94533440 -148130913 - MSTB1 LTR MaLR -3 429 1 1960 137 0 23 chr1 94533682 94533982 -148130371 - AluSg SINE Alu -17 293 1 295 324 119 43 chr1 94535545 94535730 -148128623 + L2 LINE L2 3073 3271 -1 1083 189 36 27 chr1 94535947 94536169 -148128184 + MER58A DNA MER1_type 1 224 0 204 125 0 0 chr1 94536213 94536245 -148128108 + (TA)n Simple_repeat Simple_repeat 2 33 0 202 200 0 0 chr1 94536699 94536739 -148127614 - MIR SINE MIR -7 255 216 211 306 135 9 chr1 94536796 94536907 -148127446 - L2 LINE L2 -963 2351 2227 775 196 0 20 chr1 94537105 94537253 -148127100 + FRAM SINE Alu 12 156 -20 347 250 136 29 chr1 94537431 94537571 -148126782 - MIR SINE MIR -20 242 88 206 296 74 12 chr1 94537996 94538077 -148126276 + L2 LINE L2 2438 2523 -791 258 333 121 0 chr1 94538952 94539051 -148125302 + L2 LINE L2 3162 3272 0 800 158 0 8 chr1 94540088 94540221 -148124132 - FLAM_C SINE Alu 0 133 2 2062 115 10 0 chr1 94540772 94541068 -148123285 + AluSp SINE Alu 5 303 -10 25 0 0 0 chr1 94543009 94543034 -148121319 + AT_rich Low_complexity Low_complexity 1 25 0 205 254 0 79 chr1 94543152 94543215 -148121138 + MIR3 SINE MIR 113 170 -38 650 286 40 0 chr1 94543408 94543583 -148120770 + MIR SINE MIR 32 213 -49 323 250 43 11 chr1 94544511 94544603 -148119750 + MIR3 SINE MIR 112 206 -2 193 197 76 45 chr1 94545258 94545324 -148119029 + MIR SINE MIR 119 186 -76 281 297 133 40 chr1 94545462 94545675 -148118678 + MIR SINE MIR 3 228 -34 237 294 15 29 chr1 94545696 94545764 -148118589 - L2 LINE L2 -14 3299 3233 2957 166 15 8 chr1 94545845 94546684 -148117669 - L1PA12 LINE L1 -4124 3460 2619 1688 122 72 0 chr1 94546684 94546963 -148117390 + L1PA13 LINE L1 5865 6163 0 1825 124 4 0 chr1 94547012 94547270 -148117083 - AluSx SINE Alu -16 296 38 1125 111 21 85 chr1 94547403 94547468 -148116885 - L1MA9 LINE L1 -6 6306 6238 901 96 7 22 chr1 94547468 94547603 -148116750 - FLAM_C SINE Alu 0 133 1 1125 111 21 85 chr1 94547603 94547772 -148116581 - L1MA9 LINE L1 -74 6238 6087 388 295 89 37 chr1 94548030 94548220 -148116133 - MIR3 SINE MIR -2 206 7 * 476 155 0 36 chr1 94548212 94548296 -148116057 - L2 LINE L2 0 3272 3192 196 303 0 15 chr1 94549408 94549474 -148114879 + MIR SINE MIR 195 259 -3 1289 229 160 12 chr1 94549584 94549827 -148114526 - Charlie2 DNA MER1_type -4 2858 2652 1863 138 3 51 chr1 94549827 94550138 -148114215 + AluSx SINE Alu 1 296 -16 216 0 0 0 chr1 94550138 94550162 -148114191 + (TA)n Simple_repeat Simple_repeat 2 25 0 1289 229 160 12 chr1 94550162 94550405 -148113948 - Charlie2 DNA MER1_type -209 2653 2299 210 236 0 36 chr1 94551096 94551151 -148113202 + MER5A DNA MER1_type 1 53 -136 1049 191 139 40 chr1 94551999 94552272 -148112081 + AluJo SINE Alu 1 300 -2 195 290 97 0 chr1 94553117 94553179 -148111174 + L2 LINE L2 3139 3206 -66 203 294 69 49 chr1 94553221 94553323 -148111030 + MIR SINE MIR 95 198 -64 226 312 13 0 chr1 94553381 94553458 -148110895 - MIR SINE MIR -111 151 74 2202 106 0 7 chr1 94556743 94557044 -148107309 - AluY SINE Alu -12 299 1 232 65 0 0 chr1 94557104 94557135 -148107218 + Alu SINE Alu 1 31 -270 40341 34 1 1 chr1 94607135 94612799 -148051554 + L1PA3 LINE L1 489 6152 -3 4679 143 90 27 chr1 94612808 94613207 -148051146 + L1 LINE L1 3912 4285 -1861 2392 87 0 0 chr1 94613207 94613507 -148050846 - AluY SINE Alu -10 301 2 4679 143 90 27 chr1 94613507 94614097 -148050256 + L1 LINE L1 4285 4963 -1183 302 269 131 51 chr1 94615105 94615280 -148049073 + MLT1K LTR MaLR 376 564 -24 1708 151 46 107 chr1 94615314 94615771 -148048582 - MSTB1 LTR MaLR -3 429 1 1990 137 0 23 chr1 94616013 94616313 -148048040 - AluSg SINE Alu -17 293 1 1074 191 139 40 chr1 94618262 94618535 -148045818 + AluJo SINE Alu 1 300 -2 197 290 97 0 chr1 94619380 94619442 -148044911 + L2 LINE L2 3139 3206 -66 201 284 69 49 chr1 94619484 94619586 -148044767 + MIR SINE MIR 95 198 -64 228 286 78 0 chr1 94619644 94619736 -148044617 - MIR SINE MIR -73 135 54 1701 158 0 10 chr1 94623006 94623298 -148041055 - AluY SINE Alu -12 299 11 2207 114 3 0 chr1 94623435 94623734 -148040619 + AluSp SINE Alu 4 303 -10 25 0 0 0 chr1 94625675 94625700 -148038653 + AT_rich Low_complexity Low_complexity 1 25 0 205 254 0 79 chr1 94625818 94625881 -148038472 + MIR3 SINE MIR 113 170 -38 650 280 40 0 chr1 94626074 94626249 -148038104 + MIR SINE MIR 32 213 -49 320 250 43 11 chr1 94627178 94627270 -148037083 + MIR3 SINE MIR 112 206 -2 193 197 76 45 chr1 94627894 94627960 -148036393 + MIR SINE MIR 119 186 -76 279 297 133 40 chr1 94628098 94628311 -148036042 + MIR SINE MIR 3 228 -34 233 294 15 29 chr1 94628332 94628400 -148035953 - L2 LINE L2 -14 3299 3233 2956 162 15 14 chr1 94628481 94629330 -148035023 - L1PA12 LINE L1 -4124 3460 2619 1695 122 72 0 chr1 94629330 94629609 -148034744 + L1PA13 LINE L1 5865 6163 0 1836 128 4 0 chr1 94629658 94629916 -148034437 - AluSx SINE Alu -16 296 38 1108 111 21 85 chr1 94630049 94630114 -148034239 - L1MA9 LINE L1 -6 6306 6238 915 96 7 22 chr1 94630114 94630249 -148034104 - FLAM_C SINE Alu 0 133 1 1108 111 21 85 chr1 94630249 94630418 -148033935 - L1MA9 LINE L1 -74 6238 6087 384 295 89 37 chr1 94630677 94630867 -148033486 - MIR3 SINE MIR -2 206 7 * 478 155 0 36 chr1 94630859 94630943 -148033410 - L2 LINE L2 0 3272 3192 204 288 0 15 chr1 94632053 94632119 -148032234 + MIR SINE MIR 195 259 -3 1091 221 177 23 chr1 94632340 94632580 -148031773 - Charlie2 DNA MER1_type -4 2858 2656 1982 133 3 50 chr1 94632580 94632902 -148031451 + AluSx SINE Alu 1 307 -5 252 0 0 0 chr1 94632902 94632930 -148031423 + (TA)n Simple_repeat Simple_repeat 2 29 0 1091 221 177 23 chr1 94632930 94633173 -148031180 - Charlie2 DNA MER1_type -205 2657 2299 361 274 15 88 chr1 94633864 94634068 -148030285 + MER5A DNA MER1_type 1 189 0 299 324 119 43 chr1 94634703 94634888 -148029465 + L2 LINE L2 3073 3271 -1 1080 189 36 27 chr1 94635105 94635327 -148029026 + MER58A DNA MER1_type 1 224 0 204 125 0 0 chr1 94635371 94635403 -148028950 + (TA)n Simple_repeat Simple_repeat 2 33 0 204 200 0 0 chr1 94635857 94635897 -148028456 - MIR SINE MIR -7 255 216 209 306 135 9 chr1 94635954 94636065 -148028288 - L2 LINE L2 -963 2351 2227 789 196 0 20 chr1 94636263 94636411 -148027942 + FRAM SINE Alu 12 156 -20 349 250 136 29 chr1 94636589 94636729 -148027624 - MIR SINE MIR -20 242 88 213 276 79 13 chr1 94637154 94637230 -148027123 + L2 LINE L2 2438 2518 -796 262 333 121 0 chr1 94638109 94638208 -148026145 + L2 LINE L2 3162 3272 0 813 158 0 8 chr1 94639245 94639378 -148024975 - FLAM_C SINE Alu 0 133 2 8308 107 40 19 chr1 94640325 94640998 -148023355 - Tigger1 DNA MER2_type -1085 1333 675 2582 56 3 0 chr1 94640998 94641300 -148023053 + AluSp SINE Alu 1 303 -10 8308 107 40 19 chr1 94641300 94641922 -148022431 - Tigger1 DNA MER2_type -1743 675 11 701 289 69 24 chr1 94642853 94643099 -148021254 - MIR SINE MIR 0 262 6 902 235 61 20 chr1 94643249 94643496 -148020857 + MIR SINE MIR 3 259 -3 260 318 0 26 chr1 94644142 94644293 -148020060 + G-rich Low_complexity Low_complexity 4 150 0 2351 92 0 0 chr1 94644792 94645084 -148019269 - AluY SINE Alu -15 296 5 350 284 134 46 chr1 94645658 94645815 -148018538 + MIR SINE MIR 42 221 -41 1945 139 0 37 chr1 94645815 94646139 -148018214 + AluSx SINE Alu 1 312 0 350 284 134 46 chr1 94646139 94646175 -148018178 + MIR SINE MIR 221 252 -10 1748 92 0 0 chr1 94646680 94646897 -148017456 + AluSc SINE Alu 83 299 -10 872 213 53 76 chr1 94646957 94647220 -148017133 - MIR SINE MIR 0 262 6 360 291 67 30 chr1 94647687 94647852 -148016501 + MLT1L LTR MaLR 445 615 0 396 233 107 53 chr1 94648537 94648743 -148015610 + MER20 DNA MER1_type 2 218 -1 226 323 88 62 chr1 94649107 94649333 -148015020 + L2 LINE L2 2828 3059 -213 197 268 94 81 chr1 94649514 94649580 -148014773 + MER5A DNA MER1_type 1 65 -124 2281 90 0 0 chr1 94649580 94649869 -148014484 + AluSx SINE Alu 1 289 -23 197 268 94 81 chr1 94649869 94649960 -148014393 + MER5A DNA MER1_type 65 188 -1 356 159 48 0 chr1 94649972 94650035 -148014318 - MIR SINE MIR -103 159 94 22 56 0 0 chr1 94650055 94650091 -148014262 + AT_rich Low_complexity Low_complexity 1 36 0 1640 162 44 0 chr1 94650451 94650723 -148013630 + AluSx SINE Alu 1 284 -28 1671 111 0 0 chr1 94650724 94650940 -148013413 + AluSx SINE Alu 2 217 -95 472 258 114 62 chr1 94652065 94652371 -148011982 + L1MEd LINE L1 826 1147 -5058 339 243 27 18 chr1 94652417 94652528 -148011825 + L1MEd LINE L1 1362 1473 -4923 909 268 193 80 chr1 94652858 94653223 -148011130 + L3 LINE CR1 725 1047 -530 2241 114 0 0 chr1 94653223 94653529 -148010824 + AluSg SINE Alu 1 306 -4 909 268 193 80 chr1 94653529 94653918 -148010435 + L3 LINE CR1 1047 1565 -12 23 33 0 0 chr1 94654111 94654141 -148010212 + AT_rich Low_complexity Low_complexity 1 30 0 526 322 130 8 chr1 94654417 94654656 -148009697 - MLT1K LTR MaLR -140 448 181 1465 218 39 36 chr1 94655389 94655801 -148008552 + MLT2D LTR ERVL 1 413 -1 21 0 0 0 chr1 94655845 94655866 -148008487 + AT_rich Low_complexity Low_complexity 1 21 0 601 229 77 29 chr1 94656495 94656665 -148007688 + MLT1J LTR MaLR 1 178 -333 23 33 0 0 chr1 94658377 94658407 -148005946 + AT_rich Low_complexity Low_complexity 1 30 0 2582 116 23 8 chr1 94658522 94658919 -148005434 + MSTA LTR MaLR 1 403 -25 416 264 35 75 chr1 94658932 94659088 -148005265 + MIR SINE MIR 26 175 -33 863 253 120 33 chr1 94659095 94659395 -148004958 + HsTC2a DNA Tc2 64 389 -355 1227 230 34 31 chr1 94659397 94659724 -148004629 + L1M2a LINE L1 -779 363 -5950 230 357 77 30 chr1 94659818 94659986 -148004367 + L1M2a LINE L1 872 1047 -5266 5397 214 68 76 chr1 94660001 94661994 -148002359 + L1M2a LINE L1 800 2541 -3841 1723 166 0 14 chr1 94661994 94662134 -148002219 - AluSx SINE Alu -39 273 137 2122 93 52 3 chr1 94662134 94662424 -148001929 - AluSq SINE Alu -9 304 1 1723 166 0 14 chr1 94662424 94662560 -148001793 - AluSx SINE Alu -175 137 1 5397 214 68 76 chr1 94662560 94664171 -148000182 + L1M2a LINE L1 2541 4164 -2218 842 10 0 0 chr1 94664175 94664271 -148000082 + L1P LINE L1 7 102 -6044 2123 118 0 28 chr1 94664745 94665066 -147999287 - AluSx SINE Alu 0 312 1 1598 161 9 41 chr1 94665105 94665421 -147998932 + AluJo SINE Alu 1 306 -6 278 212 0 15 chr1 94665516 94665582 -147998771 + L1ME4a LINE L1 5984 6048 -73 604 182 45 0 chr1 94665803 94665940 -147998413 - L1ME3A LINE L1 -279 5899 5752 2243 78 7 45 chr1 94667198 94667507 -147996846 - AluY SINE Alu -14 297 1 1865 163 3 7 chr1 94668120 94668414 -147995939 + AluJb SINE Alu 5 297 -15 2245 92 0 16 chr1 94668420 94668723 -147995630 + AluY SINE Alu 1 298 -13 23 33 0 0 chr1 94668843 94668873 -147995480 + AT_rich Low_complexity Low_complexity 1 30 0 911 198 22 45 chr1 94668972 94669194 -147995159 - MER20 DNA MER1_type 0 219 3 747 213 28 52 chr1 94669553 94669764 -147994589 + MER106A DNA MER1_type 1 206 -30 756 268 87 44 chr1 94670124 94670583 -147993770 + L1ME4a LINE L1 5385 5863 -258 1469 176 75 7 chr1 94670762 94671041 -147993312 - AluJo SINE Alu -14 298 1 1537 179 7 17 chr1 94671575 94671866 -147992487 + AluSx SINE Alu 5 292 -20 323 252 175 10 chr1 94672008 94672111 -147992242 - MIR SINE MIR -94 168 49 2349 88 0 0 chr1 94672343 94672639 -147991714 + AluY SINE Alu 1 296 -15 496 118 0 26 chr1 94672764 94672840 -147991513 - AluJo SINE Alu -14 298 225 256 245 0 0 chr1 94672840 94672889 -147991464 - AluJo SINE Alu -153 149 101 582 254 40 96 chr1 94672954 94673380 -147990973 - L1ME4a LINE L1 -237 5884 5483 2338 53 0 56 chr1 94673438 94673758 -147990595 - AluY SINE Alu -9 302 1 261 254 169 25 chr1 94674322 94674440 -147989913 - L1ME4a LINE L1 -1524 4622 4488 271 187 133 13 chr1 94675071 94675146 -147989207 - L1MC4 LINE L1 -11 8031 7948 519 230 97 6 chr1 94675310 94675475 -147988878 + MER46C DNA MER2_type 80 259 -79 254 240 107 40 chr1 94675527 94675602 -147988751 - MIR SINE MIR -26 236 157 196 255 39 0 chr1 94675811 94675862 -147988491 - L3 LINE CR1 -646 931 879 310 158 0 35 chr1 94676026 94676083 -147988270 + MER20 DNA MER1_type 1 55 -164 551 334 51 14 chr1 94676177 94676548 -147987805 + L1MC4a LINE L1 5513 5897 -1911 300 235 24 12 chr1 94676661 94676746 -147987607 + L1ME4a LINE L1 5964 6049 -72 214 346 118 15 chr1 94676778 94676914 -147987439 - MIR SINE MIR -1 261 112 1703 146 0 0 chr1 94677404 94677650 -147986703 - AluSx SINE Alu -21 291 46 258 302 86 17 chr1 94677834 94677950 -147986403 - MIR3 SINE MIR -25 183 60 395 293 167 0 chr1 94678360 94678510 -147985843 + MER5A DNA MER1_type 9 183 -6 267 31 0 0 chr1 94678530 94678562 -147985791 + (CA)n Simple_repeat Simple_repeat 2 33 0 323 204 235 0 chr1 94678570 94678668 -147985685 - MER5C DNA MER1_type -203 121 1 537 261 171 22 chr1 94678922 94679144 -147985209 - MIR SINE MIR 0 262 8 266 261 0 29 chr1 94679379 94679448 -147984905 + 7SK RNA RNA 1 67 -126 1407 285 48 15 chr1 94679940 94681028 -147983325 + L1ME3A LINE L1 4697 5825 -337 250 280 110 8 chr1 94681038 94681156 -147983197 + L1ME3A LINE L1 5988 6117 -53 998 292 117 34 chr1 94681548 94681800 -147982553 + L2 LINE L2 2505 2735 -578 1982 145 0 7 chr1 94681800 94682104 -147982249 - AluJb SINE Alu -10 302 1 998 292 117 34 chr1 94682104 94682600 -147981753 + L2 LINE L2 2735 3308 -5 23 54 0 0 chr1 94683117 94683154 -147981199 + AT_rich Low_complexity Low_complexity 1 37 0 306 314 15 51 chr1 94685371 94685508 -147978845 + MIR SINE MIR 99 230 -32 213 336 35 49 chr1 94685751 94685894 -147978459 + MIR SINE MIR 99 239 -23 2313 180 81 4 chr1 94686061 94686582 -147977771 - L1M4 LINE L1 -364 5797 5237 1001 246 142 77 chr1 94686584 94686872 -147977481 + MLT1F LTR MaLR 1 269 -273 1702 188 41 44 chr1 94686872 94687261 -147977092 + MLT1B LTR MaLR 3 390 0 1001 246 142 77 chr1 94687261 94687480 -147976873 + MLT1F LTR MaLR 269 541 -1 1102 186 34 23 chr1 94687488 94687593 -147976760 - L1M4 LINE L1 -905 5224 5122 2156 94 20 13 chr1 94687593 94687891 -147976462 - AluSx SINE Alu -12 300 1 1102 186 34 23 chr1 94687891 94688048 -147976305 - L1M4 LINE L1 -1007 5122 4959 293 217 108 24 chr1 94688052 94688135 -147976218 + MER8 DNA MER2_type 2 91 -148 2380 208 76 12 chr1 94688240 94688767 -147975586 - L1M4 LINE L1 -1179 4950 4373 2006 134 0 26 chr1 94688767 94689074 -147975279 - AluJb SINE Alu -13 299 1 2380 208 76 12 chr1 94689074 94689191 -147975162 - L1M4 LINE L1 -1756 4373 4265 242 205 116 36 chr1 94689213 94689325 -147975028 - L1M4 LINE L1 -2374 3755 3635 258 337 72 6 chr1 94689326 94689492 -147974861 - L1M4 LINE L1 -5022 1097 921 2244 116 0 0 chr1 94689569 94689872 -147974481 - AluSq SINE Alu -10 303 1 4680 150 17 30 chr1 94690817 94691811 -147972542 - MER11C LTR ERVK 0 1071 1 383 288 53 53 chr1 94691891 94692061 -147972292 + MER5A DNA MER1_type 20 189 0 1518 135 43 23 chr1 94692077 94692311 -147972042 + MER33 DNA MER1_type 1 244 -2341 1983 141 17 0 chr1 94692311 94692610 -147971743 - AluSx SINE Alu -5 307 4 1518 135 43 23 chr1 94692610 94692678 -147971675 + MER33 DNA MER1_type 244 309 -15 256 367 25 25 chr1 94692794 94692990 -147971363 + L2 LINE L2 2659 2854 -460 225 0 0 0 chr1 94693082 94693107 -147971246 + (TG)n Simple_repeat Simple_repeat 2 26 0 349 306 103 83 chr1 94693277 94693578 -147970775 - L2 LINE L2 -27 3245 2939 936 191 86 24 chr1 94693602 94693925 -147970428 + MSTD LTR MaLR 6 365 0 31 68 0 0 chr1 94694411 94694470 -147969883 + AT_rich Low_complexity Low_complexity 1 59 0 2273 113 3 0 chr1 94694966 94695277 -147969076 + AluSx SINE Alu 1 312 0 324 209 75 134 chr1 94695893 94696080 -147968273 - MER69A DNA AcHobo 0 177 2 927 243 93 18 chr1 94696358 94696619 -147967734 + L1MEc LINE L1 1361 1662 -4734 1652 157 45 7 chr1 94696619 94696905 -147967448 + AluJb SINE Alu 3 299 -13 927 243 93 18 chr1 94696905 94697030 -147967323 + L1MEc LINE L1 1662 1776 -4620 21 0 0 0 chr1 94697030 94697051 -147967302 + AT_rich Low_complexity Low_complexity 1 21 0 437 263 43 60 chr1 94697078 94697310 -147967043 + L1MEc LINE L1 1864 2091 -4305 304 261 52 26 chr1 94697342 94697457 -147966896 + L1ME LINE L1 477 594 -5936 456 278 62 82 chr1 94698034 94698094 -147966259 + L1ME LINE L1 1285 1345 -5232 2129 119 7 3 chr1 94698094 94698397 -147965956 + AluSx SINE Alu 1 304 -8 456 278 62 82 chr1 94698397 94698881 -147965472 + L1ME LINE L1 1345 1846 -4731 2140 116 7 0 chr1 94698881 94699200 -147965153 + AluSx SINE Alu 1 321 0 456 278 62 82 chr1 94699200 94699459 -147964894 + L1ME LINE L1 1846 2109 -4468 * 988 183 37 11 chr1 94699453 94699671 -147964682 + L1 LINE L1 5081 5307 -865 207 0 0 0 chr1 94699671 94699694 -147964659 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 988 183 37 11 chr1 94699694 94699712 -147964641 + L1 LINE L1 5307 5323 -849 * 2011 139 30 6 chr1 94699706 94700178 -147964175 + L1MA4 LINE L1 5127 5608 -692 743 119 0 119 chr1 94700180 94700340 -147964013 + L1MA4 LINE L1 6154 6294 -6 419 167 0 0 chr1 94700545 94700617 -147963736 - AluS SINE Alu -13 299 228 1923 149 0 30 chr1 94700646 94700947 -147963406 - AluSx SINE Alu -13 299 8 1084 244 81 41 chr1 94700989 94701466 -147962887 + L1ME LINE L1 2365 2839 -3701 786 244 24 29 chr1 94701466 94701675 -147962678 - MER63A DNA MER1_type 0 210 3 1084 244 81 41 chr1 94701675 94701821 -147962532 + L1ME LINE L1 2839 2978 -3562 267 333 40 20 chr1 94701929 94702028 -147962325 - MIR SINE MIR -92 116 16 2321 93 3 3 chr1 94702084 94702385 -147961968 - AluSp SINE Alu -12 301 1 36 40 0 0 chr1 94702487 94702537 -147961816 + AT_rich Low_complexity Low_complexity 1 50 0 521 238 100 25 chr1 94702678 94702838 -147961515 - MIR SINE MIR -7 255 84 3197 153 8 22 chr1 94703170 94703757 -147960596 - L1MB4 LINE L1 -7 6173 5595 189 254 0 0 chr1 94703757 94703828 -147960525 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 759 208 6 6 chr1 94703842 94704001 -147960352 - L1MB4 LINE L1 -575 5605 5447 1414 269 122 53 chr1 94704004 94704736 -147959617 - MER21B LTR ERV1 -81 782 1 2447 178 31 19 chr1 94704740 94704796 -147959557 - L1MB4 LINE L1 -733 5447 5393 1919 175 0 7 chr1 94704796 94705104 -147959249 - AluJo SINE Alu -6 306 1 2447 178 31 19 chr1 94705104 94705668 -147958685 - L1MB4 LINE L1 -787 5393 4823 208 290 48 0 chr1 94707368 94707430 -147956923 + MIR SINE MIR 172 236 -26 289 360 39 7 chr1 94707965 94708118 -147956235 - MIR3 SINE MIR 0 208 51 357 174 69 90 chr1 94708638 94708782 -147955571 + MIR SINE MIR 86 226 -36 2474 75 3 0 chr1 94708811 94709119 -147955234 - AluY SINE Alu -2 309 1 197 119 24 0 chr1 94709187 94709229 -147955124 + T-rich Low_complexity Low_complexity 3 45 0 316 302 154 13 chr1 94709301 94709450 -147954903 + MIR SINE MIR 86 255 -7 1240 188 5 5 chr1 94709896 94710119 -147954234 - MER58A DNA MER1_type -1 223 1 2096 131 0 3 chr1 94710173 94710471 -147953882 - AluSx SINE Alu -15 297 1 216 0 0 0 chr1 94710476 94710500 -147953853 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 2221 119 0 0 chr1 94710500 94710793 -147953560 - AluSx SINE Alu -19 293 1 266 125 21 0 chr1 94711006 94711054 -147953299 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 827 198 32 78 chr1 94711686 94711903 -147952450 + MER63A DNA MER1_type 1 207 -3 275 306 0 0 chr1 94712140 94712212 -147952141 + L2 LINE L2 3242 3313 0 238 227 45 0 chr1 94712473 94712539 -147951814 + A-rich Low_complexity Low_complexity 3 71 0 219 200 0 83 chr1 94712565 94712625 -147951728 - MIR3 SINE MIR -31 177 123 420 269 67 8 chr1 94712634 94712768 -147951585 + MIR SINE MIR 101 242 -20 191 239 22 22 chr1 94712800 94712846 -147951507 - MIR SINE MIR -139 69 24 2172 123 0 3 chr1 94714153 94714454 -147949899 - AluSx SINE Alu -12 300 1 755 152 164 18 chr1 94715455 94715620 -147948733 - MER5A DNA MER1_type 0 189 1 2642 254 161 45 chr1 94716016 94717050 -147947303 + L2 LINE L2 347 1500 -1814 1200 167 0 36 chr1 94717052 94717273 -147947080 - AluSq SINE Alu -25 288 76 1634 97 4 45 chr1 94717385 94717632 -147946721 + AluSq SINE Alu 76 312 -1 331 320 70 50 chr1 94717704 94717963 -147946390 - L1MEd LINE L1 -5343 776 513 3676 293 42 19 chr1 94718297 94718611 -147945742 + L2 LINE L2 1826 2131 -1182 2237 103 3 7 chr1 94718611 94718913 -147945440 - AluSc SINE Alu -5 304 4 3676 293 42 19 chr1 94718913 94719278 -147945075 + L2 LINE L2 2131 2486 -827 889 71 79 8 chr1 94719278 94719405 -147944948 + MER85 DNA T2_type 1 136 -3 3676 293 42 19 chr1 94719405 94720009 -147944344 + L2 LINE L2 2486 3136 -177 230 161 0 18 chr1 94720367 94720423 -147943930 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr1 94722533 94722554 -147941799 + AT_rich Low_complexity Low_complexity 1 21 0 553 311 60 50 chr1 94722899 94723282 -147941071 - L2 LINE L2 -40 3273 2887 3859 214 62 36 chr1 94723482 94723586 -147940767 - Charlie1a DNA MER1_type -1307 1454 1354 2415 80 0 13 chr1 94723586 94723897 -147940456 - AluSx SINE Alu -5 307 1 3859 214 62 36 chr1 94723897 94724889 -147939464 - Charlie1a DNA MER1_type -1407 1354 330 43054 30 21 1 chr1 94725003 94731031 -147933322 + L1HS LINE L1 1 6154 -1 2909 230 69 9 chr1 94731046 94731891 -147932462 + L1MB3 LINE L1 947 1841 -4543 5138 167 19 34 chr1 94731892 94732615 -147931738 + L1MB3 LINE L1 4903 5635 -784 2241 99 3 0 chr1 94732615 94732908 -147931445 + AluSx SINE Alu 1 294 -18 5138 167 19 34 chr1 94732908 94733716 -147930637 + L1MB3 LINE L1 5635 6417 -2 289 284 131 28 chr1 94733739 94733915 -147930438 + L1MC/D LINE L1 5611 5804 -2004 394 213 126 55 chr1 94733922 94734049 -147930304 - Charlie1a DNA MER1_type -1214 241 106 256 172 109 0 chr1 94734138 94734202 -147930151 + L2 LINE L2 3194 3264 -8 625 235 45 49 chr1 94735151 94735286 -147929067 + MER112 DNA MER1_type 6 141 -119 796 178 6 50 chr1 94735286 94735466 -147928887 - L1MB5 LINE L1 0 6174 6003 625 235 45 49 chr1 94735466 94735573 -147928780 + MER112 DNA MER1_type 141 247 -13 180 328 49 0 chr1 94735766 94735827 -147928526 - L2 LINE L2 -92 3221 3158 237 53 26 0 chr1 94736530 94736568 -147927785 + (TTTG)n Simple_repeat Simple_repeat 1 164 0 1611 133 128 0 chr1 94736568 94736817 -147927536 - AluSx SINE Alu 0 319 1 301 344 82 0 chr1 94737578 94737700 -147926653 - MIR SINE MIR -14 248 117 2058 136 0 3 chr1 94739607 94739902 -147924451 + AluSx SINE Alu 1 294 -18 2332 92 0 16 chr1 94739951 94740268 -147924085 - AluSx SINE Alu 0 312 1 464 146 67 56 chr1 94740623 94740712 -147923641 - MER20 DNA MER1_type -55 164 75 450 0 0 0 chr1 94740929 94740979 -147923374 + (CA)n Simple_repeat Simple_repeat 2 51 0 357 384 20 7 chr1 94741052 94741198 -147923155 + MIR3 SINE MIR 34 181 -27 620 184 0 52 chr1 94741243 94741379 -147922974 - FLAM_A SINE Alu -6 136 8 1375 208 49 3 chr1 94741896 94742018 -147922335 + AluJo SINE Alu 1 116 -196 300 83 0 0 chr1 94742018 94742066 -147922287 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1375 208 49 3 chr1 94742066 94742227 -147922126 + AluJo SINE Alu 116 297 -15 2035 144 3 13 chr1 94742559 94742872 -147921481 + AluSx SINE Alu 3 312 0 2210 89 4 0 chr1 94743297 94743609 -147920744 + AluY SINE Alu 1 313 0 859 276 212 26 chr1 94744332 94744979 -147919374 - L2 LINE L2 -2 3311 2550 420 313 125 29 chr1 94745092 94745300 -147919053 - L3 LINE CR1 -2 1575 1348 348 303 0 0 chr1 94745508 94745597 -147918756 - L3 LINE CR1 -255 1322 1234 543 233 136 57 chr1 94745631 94745910 -147918443 - L2 LINE L2 -8 3305 3005 274 253 93 28 chr1 94746157 94746335 -147918018 - L3 LINE CR1 -364 1213 977 241 189 33 89 chr1 94746958 94747048 -147917305 + L1MA9 LINE L1 6121 6205 -107 5331 54 1 0 chr1 94747584 94748252 -147916101 - L1PA7 LINE L1 -8 6146 5478 279 0 0 0 chr1 94748252 94748283 -147916070 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 21063 79 2 0 chr1 94748283 94751987 -147912366 - L1PA2 LINE L1 -11 6144 2507 256 377 0 0 chr1 94752041 94752110 -147912243 - L2 LINE L2 -56 3257 3189 1403 197 29 10 chr1 94752587 94752897 -147911456 - L1M4 LINE L1 -3171 2975 2660 310 328 86 23 chr1 94752948 94753204 -147911149 - L1ME4a LINE L1 -175 5946 5675 2165 108 0 0 chr1 94753410 94753719 -147910634 - AluSc SINE Alu 0 311 3 527 280 109 58 chr1 94753752 94754266 -147910087 - L1MC4a LINE L1 -73 6048 5509 446 0 19 0 chr1 94754497 94754551 -147909802 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 25 0 0 0 chr1 94754589 94754614 -147909739 + AT_rich Low_complexity Low_complexity 1 25 0 1465 202 4 0 chr1 94754614 94754876 -147909477 - AluJo SINE Alu -49 263 1 2303 104 3 0 chr1 94755079 94755377 -147908976 - AluSq SINE Alu -14 299 1 1072 166 36 31 chr1 94755467 94755690 -147908663 - AluJo SINE Alu -3 309 86 465 258 157 63 chr1 94755853 94756121 -147908232 + MLT1L LTR MaLR 305 597 -18 21 36 0 0 chr1 94756433 94756461 -147907892 + AT_rich Low_complexity Low_complexity 1 28 0 332 320 47 23 chr1 94757047 94757175 -147907178 + MIR SINE MIR 61 191 -71 363 185 173 0 chr1 94758214 94758295 -147906058 + MIR SINE MIR 118 212 -50 1950 138 0 21 chr1 94758572 94758861 -147905492 - AluSx SINE Alu -29 283 1 473 60 0 0 chr1 94758870 94758937 -147905416 - L1PA4 LINE L1 -4 6151 6085 1162 28 21 0 chr1 94758937 94759079 -147905274 + L1PA4 LINE L1 5757 5901 -254 266 306 53 39 chr1 94760149 94760355 -147903998 + L1MC4 LINE L1 7832 8040 -2 1874 178 3 3 chr1 94761195 94761504 -147902849 - AluJo SINE Alu -3 309 1 4404 199 89 49 chr1 94763423 94763674 -147900679 + Cheshire DNA MER1_type 5 244 -2176 13639 119 13 18 chr1 94763674 94764560 -147899793 - L1PA10 LINE L1 0 6168 5279 2286 102 0 3 chr1 94764560 94764864 -147899489 - AluY SINE Alu -8 303 1 13639 119 13 18 chr1 94764864 94767013 -147897340 - L1PA10 LINE L1 -889 5279 3161 4404 199 89 49 chr1 94767013 94767928 -147896425 + Cheshire DNA MER1_type 244 1218 -1202 1737 174 53 27 chr1 94767928 94768302 -147896051 + Cheshire DNA MER1_type 1773 2156 -264 538 205 109 24 chr1 94768426 94768636 -147895717 + Cheshire DNA MER1_type 2176 2403 -17 193 371 33 40 chr1 94768740 94768878 -147895475 - L2 LINE L2 -1 3312 3174 1665 163 0 80 chr1 94768878 94769215 -147895138 + AluJo SINE Alu 3 312 0 193 371 33 40 chr1 94769215 94769227 -147895126 - L2 LINE L2 -139 3174 3163 405 198 26 0 chr1 94769876 94769992 -147894361 + GA-rich Low_complexity Low_complexity 2 120 0 32 26 0 0 chr1 94771216 94771255 -147893098 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr1 94771298 94771322 -147893031 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr1 94771882 94771919 -147892434 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr1 94772196 94772228 -147892125 + AT_rich Low_complexity Low_complexity 1 32 0 314 238 139 10 chr1 94773050 94773151 -147891202 + L2 LINE L2 3200 3313 0 322 286 0 20 chr1 94773204 94773302 -147891051 - MIR SINE MIR -37 225 130 2389 73 0 25 chr1 94773391 94773707 -147890646 + AluY SINE Alu 1 308 -3 319 357 211 16 chr1 94773707 94774029 -147890324 - L2 LINE L2 -3 3269 2885 * 943 280 20 4 chr1 94774027 94774277 -147890076 + MIR SINE MIR 9 262 0 1857 150 3 29 chr1 94774384 94774691 -147889662 + AluJo SINE Alu 1 299 -13 582 15 0 0 chr1 94775687 94775754 -147888599 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr1 94776230 94776252 -147888101 + AT_rich Low_complexity Low_complexity 1 22 0 270 342 147 19 chr1 94776628 94776941 -147887412 + L2 LINE L2 1605 1957 -1357 452 289 22 0 chr1 94776944 94777079 -147887274 - LTR67 LTR ERVL -2 555 418 374 356 40 48 chr1 94777113 94777363 -147886990 - LTR67 LTR ERVL -215 342 95 1579 299 142 29 chr1 94777535 94777722 -147886631 + L2 LINE L2 1967 2131 -1183 1179 289 82 29 chr1 94777722 94778213 -147886140 + LTR33 LTR ERVL 1 517 -4 1579 299 142 29 chr1 94778213 94778931 -147885422 + L2 LINE L2 2131 2975 -339 1752 223 86 34 chr1 94779069 94779626 -147884727 - L1ME1 LINE L1 -4 6162 5577 1815 133 68 0 chr1 94779659 94779967 -147884386 + AluSg SINE Alu 1 326 0 1166 205 111 16 chr1 94779969 94780355 -147883998 - L1ME1 LINE L1 -1598 4548 4126 270 146 0 0 chr1 94780371 94780412 -147883941 - L1ME1 LINE L1 -1997 4149 4109 2209 114 42 25 chr1 94780949 94781307 -147883046 - THE1B LTR MaLR 0 364 1 406 323 50 81 chr1 94781320 94781347 -147883006 + L1M4 LINE L1 3996 4022 -2124 1457 208 39 3 chr1 94781347 94781631 -147882722 - AluJo SINE Alu -16 296 3 406 323 50 81 chr1 94781631 94781999 -147882354 + L1M4 LINE L1 4022 4379 -1767 609 256 54 6 chr1 94782064 94782241 -147882112 + MIR SINE MIR 68 253 -9 2466 62 0 3 chr1 94782285 94782590 -147881763 + AluY SINE Alu 1 304 -7 338 257 57 45 chr1 94782634 94782879 -147881474 + L1M4 LINE L1 4545 4792 -1354 1341 180 75 7 chr1 94782879 94783157 -147881196 - MER58B DNA MER1_type 0 341 45 258 200 171 0 chr1 94783244 94783314 -147881039 + LTR33 LTR ERVL 4 85 -436 255 272 58 87 chr1 94783628 94783834 -147880519 + HERVL LTR ERVL 1169 1368 -4396 1585 313 107 60 chr1 94783997 94785205 -147879148 + HERVL LTR ERVL 1621 2885 -2879 2294 147 88 176 chr1 94785215 94786012 -147878341 - LTR8A LTR ERV1 0 727 1 294 68 55 27 chr1 94786240 94786313 -147878040 + (TA)n Simple_repeat Simple_repeat 1 75 0 1185 181 24 8 chr1 94786313 94786563 -147877790 - L1MB3 LINE L1 -35 6144 5884 1972 180 6 88 chr1 94786586 94787004 -147877349 + MER41B LTR ERV1 150 365 -121 1871 158 113 40 chr1 94787004 94787402 -147876951 + MSTA LTR MaLR 1 427 -1 1972 180 6 88 chr1 94787402 94787507 -147876846 + MER41B LTR ERV1 365 477 -9 1111 170 29 98 chr1 94787511 94787822 -147876531 - L1MB3 LINE L1 -247 5936 5650 1611 174 13 62 chr1 94787895 94788279 -147876074 - L1MB3 LINE L1 -494 5689 5325 1639 337 52 24 chr1 94788279 94789431 -147874922 + HERVL LTR ERVL 3049 4314 -1450 2846 3 0 3 chr1 94790030 94790342 -147874011 - AluYa5 SINE Alu 0 311 1 279 297 10 10 chr1 94790541 94790642 -147873711 + LTR67 LTR ERVL 428 528 -29 21 0 0 0 chr1 94791466 94791487 -147872866 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 94791897 94791918 -147872435 + AT_rich Low_complexity Low_complexity 1 21 0 495 289 7 15 chr1 94792536 94792671 -147871682 + HERVL LTR ERVL 4161 4294 -1360 428 292 68 67 chr1 94794652 94794861 -147869492 + MIR3 SINE MIR 44 251 -9 299 293 146 8 chr1 94794907 94795030 -147869323 - L2 LINE L2 0 3313 3174 21 0 0 0 chr1 94796162 94796183 -147868170 + AT_rich Low_complexity Low_complexity 1 21 0 2331 116 0 0 chr1 94796328 94796639 -147867714 - AluSx SINE Alu -1 311 1 455 331 20 13 chr1 94797837 94797988 -147866365 + MIR3 SINE MIR 36 187 -21 28 0 0 0 chr1 94798618 94798646 -147865707 + AT_rich Low_complexity Low_complexity 1 28 0 2964 104 12 61 chr1 94799147 94799655 -147864698 + MER31A LTR ERV1 1 483 -2 222 37 0 0 chr1 94800424 94800451 -147863902 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1388 204 166 34 chr1 94800465 94800911 -147863442 + MLT1D LTR MaLR 1 505 0 333 0 0 0 chr1 94801395 94801432 -147862921 + (TTA)n Simple_repeat Simple_repeat 3 39 0 42732 34 22 1 chr1 94801432 94807436 -147856917 - L1PA3 LINE L1 -18 6137 6 219 308 149 0 chr1 94808152 94808259 -147856094 - L2 LINE L2 -214 3058 2936 309 300 8 58 chr1 94808259 94808379 -147855974 - L2 LINE L2 -612 2702 2589 10909 22 1 0 chr1 94808379 94809658 -147854695 - L1PA4 LINE L1 -954 5192 3913 7418 36 5 0 chr1 94809658 94810618 -147853735 + L1PA4 LINE L1 5189 6152 -3 276 148 0 0 chr1 94810762 94810823 -147853530 + (GA)n Simple_repeat Simple_repeat 2 62 0 322 336 85 31 chr1 94810824 94811047 -147853306 - L2 LINE L2 -832 2482 2248 291 326 0 0 chr1 94811494 94811586 -147852767 + L2 LINE L2 3156 3247 -25 2035 95 3 44 chr1 94811623 94811919 -147852434 - AluSc SINE Alu -25 284 1 1271 152 125 4 chr1 94812065 94812321 -147852032 + L1MB5 LINE L1 5801 6087 -87 991 223 69 42 chr1 94812321 94812810 -147851543 + MER39 LTR ERV1 1 541 -1 528 137 0 0 chr1 94812815 94812910 -147851443 + L1MB4 LINE L1 6086 6180 0 181 237 0 0 chr1 94814486 94814524 -147849829 - L2 LINE L2 -243 3070 3033 856 299 51 40 chr1 94814576 94814950 -147849403 - L2 LINE L2 -3 3310 2933 1888 150 4 0 chr1 94815409 94815726 -147848627 + AluJb SINE Alu 3 320 0 1504 134 70 46 chr1 94815931 94816215 -147848138 + AluJo SINE Alu 1 291 -21 388 237 54 0 chr1 94818101 94818194 -147846159 + FLAM_A SINE Alu 1 98 -35 27 0 0 0 chr1 94818372 94818399 -147845954 + AT_rich Low_complexity Low_complexity 1 27 0 187 178 111 0 chr1 94819383 94819428 -147844925 - MIR SINE MIR -90 172 123 239 250 0 0 chr1 94819601 94819653 -147844700 - MIR SINE MIR -128 134 83 195 129 0 0 chr1 94820603 94820634 -147843719 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 608 314 184 27 chr1 94820792 94821500 -147842853 + L1M4 LINE L1 2875 3693 -2453 430 322 14 5 chr1 94821596 94821810 -147842543 + L1M4 LINE L1 3729 3944 -2202 640 281 37 15 chr1 94821814 94822084 -147842269 + L1M4 LINE L1 3894 4169 -1977 316 288 81 77 chr1 94822477 94823129 -147841224 + L1M4 LINE L1 4741 5395 -751 22 35 0 0 chr1 94823242 94823271 -147841082 + AT_rich Low_complexity Low_complexity 1 29 0 22 88 0 0 chr1 94824407 94824464 -147839889 + AT_rich Low_complexity Low_complexity 1 57 0 186 103 0 0 chr1 94824535 94824564 -147839789 + (TATG)n Simple_repeat Simple_repeat 4 32 0 2197 130 0 0 chr1 94824792 94825099 -147839254 - AluSx SINE Alu -5 307 1 25 0 0 0 chr1 94825683 94825708 -147838645 + AT_rich Low_complexity Low_complexity 1 25 0 206 143 0 0 chr1 94826861 94826896 -147837457 + L2 LINE L2 3278 3312 -1 475 336 57 32 chr1 94827100 94827347 -147837006 + MIR SINE MIR 10 262 0 227 111 0 0 chr1 94827480 94827525 -147836828 + LTR66 LTR ERVL 394 438 -172 958 269 61 76 chr1 94827792 94829304 -147835049 - L1ME LINE L1 -359 5811 4309 689 189 0 0 chr1 94829306 94829428 -147834925 - FLAM_A SINE Alu -10 132 11 321 257 92 48 chr1 94829436 94829451 -147834902 + L2 LINE L2 2193 2206 -1108 10969 202 26 10 chr1 94829451 94831195 -147833158 - L1PA15 LINE L1 -1 6164 4354 1949 104 4 0 chr1 94831195 94831454 -147832899 - AluSc SINE Alu -12 297 38 10969 202 26 10 chr1 94831454 94832996 -147831357 - L1PA15 LINE L1 -1811 4354 2837 321 257 92 48 chr1 94832996 94833186 -147831167 + L2 LINE L2 2206 2407 -907 273 98 0 0 chr1 94833948 94833989 -147830364 + (A)n Simple_repeat Simple_repeat 1 41 0 1128 340 73 17 chr1 94834422 94835079 -147829274 + L2 LINE L2 2407 3099 -214 372 88 0 0 chr1 94835106 94835163 -147829190 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 460 217 149 68 chr1 94835163 94835222 -147829131 + L2 LINE L2 3045 3098 -215 1423 184 40 20 chr1 94835222 94835521 -147828832 - AluJb SINE Alu -3 309 5 460 217 149 68 chr1 94835521 94835710 -147828643 + L2 LINE L2 3098 3313 0 418 337 109 4 chr1 94835722 94835989 -147828364 + Tigger8 DNA MER2_type 366 660 -6 685 170 0 18 chr1 94836336 94836448 -147827905 + FLAM_A SINE Alu 12 121 -21 3810 162 95 23 chr1 94836719 94836948 -147827405 - L1MB8 LINE L1 -47 6131 5920 2414 88 0 0 chr1 94836948 94837255 -147827098 + AluY SINE Alu 1 307 -4 3810 162 95 23 chr1 94837255 94837964 -147826389 - L1MB8 LINE L1 -258 5920 5134 1030 174 5 5 chr1 94837967 94838163 -147826190 - L1MB8 LINE L1 -1081 5065 4870 779 367 27 31 chr1 94838249 94838805 -147825548 + L2 LINE L2 2761 3312 -1 4603 38 0 0 chr1 94839328 94839902 -147824451 - L1P LINE L1 -1517 4629 4056 6898 48 15 5 chr1 94839902 94841039 -147823314 + L1PA5 LINE L1 5004 6149 -5 1981 130 21 0 chr1 94842468 94842752 -147821601 + AluSx SINE Alu 1 290 -22 268 275 156 18 chr1 94842807 94842916 -147821437 + MIR SINE MIR 68 191 -71 2041 131 0 0 chr1 94842979 94843281 -147821072 + AluSx SINE Alu 1 302 0 2097 106 4 0 chr1 94844245 94844519 -147819834 - AluSx SINE Alu -25 287 13 24 53 0 0 chr1 94845559 94845597 -147818756 + AT_rich Low_complexity Low_complexity 1 38 0 28273 49 7 1 chr1 94845805 94850326 -147814027 + L1PA5 LINE L1 1608 6151 -3 1956 151 3 18 chr1 94851272 94851610 -147812743 + MER1B DNA MER1_type 7 339 0 323 197 0 0 chr1 94852743 94852819 -147811534 - L1MA7 LINE L1 -12 6279 6204 181 266 13 51 chr1 94852926 94853005 -147811348 + MIR SINE MIR 91 166 -96 459 0 0 0 chr1 94853844 94853895 -147810458 + (CA)n Simple_repeat Simple_repeat 2 52 0 183 413 13 20 chr1 94854105 94854255 -147810098 - L2 LINE L2 -449 2865 2717 402 325 81 33 chr1 94854399 94854731 -147809622 - L2 LINE L2 -796 2518 2171 23 0 0 0 chr1 94855166 94855189 -147809164 + AT_rich Low_complexity Low_complexity 1 23 0 2135 126 0 0 chr1 94855496 94855790 -147808563 - AluSq SINE Alu -19 294 1 230 271 68 0 chr1 94855875 94855934 -147808419 - L2 LINE L2 0 3272 3210 1205 151 18 0 chr1 94856043 94856262 -147808091 - L1MC2 LINE L1 -377 6385 6163 1638 191 54 3 chr1 94856262 94856598 -147807755 - MLT1A1 LTR MaLR 0 365 10 8277 197 76 58 chr1 94856618 94857373 -147806980 - L1MC2 LINE L1 -597 6165 5425 288 0 0 0 chr1 94857373 94857405 -147806948 + (TG)n Simple_repeat Simple_repeat 2 33 0 8277 197 76 58 chr1 94857405 94857616 -147806737 - L1MC2 LINE L1 -1337 5425 5219 1870 159 118 33 chr1 94857616 94858013 -147806340 - Tigger2a DNA MER2_type 0 434 4 8277 197 76 58 chr1 94858013 94859371 -147804982 - L1MC2 LINE L1 -1543 5219 3887 279 0 0 0 chr1 94859371 94859402 -147804951 + (CAAAT)n Simple_repeat Simple_repeat 4 34 0 8277 197 76 58 chr1 94859402 94859501 -147804852 - L1MC2 LINE L1 -2875 3887 3791 1986 90 0 30 chr1 94859501 94859767 -147804586 + AluSg SINE Alu 39 296 -14 8277 197 76 58 chr1 94859767 94860322 -147804031 - L1MC2 LINE L1 -2971 3791 3247 2308 41 48 3 chr1 94860322 94860617 -147803736 + AluY SINE Alu 1 308 -3 8277 197 76 58 chr1 94860617 94861332 -147803021 - L1MC2 LINE L1 -3515 3247 2546 1907 178 0 9 chr1 94861332 94861647 -147802706 - AluSx SINE Alu 0 312 1 8277 197 76 58 chr1 94861647 94861804 -147802549 - L1MC2 LINE L1 -4216 2546 2393 678 192 0 0 chr1 94861804 94861924 -147802429 - 5S rRNA rRNA 0 121 2 8277 197 76 58 chr1 94861924 94862275 -147802078 - L1MC2 LINE L1 -4369 2393 1880 2389 225 91 65 chr1 94862272 94863311 -147801042 - L1MC2 LINE L1 -4978 1067 1 * 1872 133 26 26 chr1 94863325 94863504 -147800849 - AluSx SINE Alu -10 302 121 189 0 0 0 chr1 94863504 94863525 -147800828 + (TA)n Simple_repeat Simple_repeat 1 21 0 1872 133 26 26 chr1 94863525 94863647 -147800706 - AluSx SINE Alu -190 122 1 2607 117 18 37 chr1 94863665 94864119 -147800234 - MER65A LTR ERV1 0 445 1 1248 139 77 5 chr1 94864194 94864388 -147799965 - AluSg/x SINE Alu -17 295 88 3674 119 7 0 chr1 94865640 94866251 -147798102 + HERVH48 LTR ERV1 578 1192 -5462 4833 124 1 0 chr1 94866258 94866985 -147797368 + HERVH48 LTR ERV1 1809 2536 -4118 10462 97 19 2 chr1 94867093 94868614 -147795739 + HERVH48 LTR ERV1 4627 6173 -481 10175 100 25 3 chr1 94868746 94870266 -147794087 + L1P LINE L1 1 1554 -4592 1429 193 21 3 chr1 94870378 94870709 -147793644 - L1 LINE L1 -3153 4412 4076 3160 213 12 36 chr1 94870710 94872054 -147792299 - L1 LINE L1 -3533 4032 2724 647 220 28 7 chr1 94872158 94872299 -147792054 + MER5A DNA MER1_type 23 166 -23 733 161 0 0 chr1 94872975 94873105 -147791248 - MER83C LTR ERV1 -30 343 214 2565 118 0 0 chr1 94873109 94873473 -147790880 - MER48 LTR ERV1 0 387 24 941 362 49 4 chr1 94873584 94874376 -147789977 + HERV16 LTR ERVL 4196 5062 -655 715 308 63 27 chr1 94874617 94874951 -147789402 + LTR16A LTR ERVL 96 441 -9 2516 54 0 0 chr1 94876023 94876320 -147788033 + AluY SINE Alu 1 297 -14 776 286 14 5 chr1 94876912 94877129 -147787224 + MLT1I LTR MaLR 191 409 0 304 258 67 54 chr1 94877213 94877255 -147787098 + MLT1J1 LTR MaLR 255 295 -151 1954 134 13 26 chr1 94877255 94877568 -147786785 + AluJo SINE Alu 1 309 -3 304 258 67 54 chr1 94877568 94877734 -147786619 + MLT1J1 LTR MaLR 295 446 0 33715 74 56 6 chr1 94878848 94884699 -147779654 + L1PA6 LINE L1 11 6164 0 206 287 144 46 chr1 94884703 94884877 -147779476 - L2 LINE L2 -1254 2060 1870 40987 32 21 1 chr1 94884927 94890960 -147773393 + L1HS LINE L1 1 6155 0 1245 212 38 12 chr1 94891741 94892208 -147772145 - MLT1F LTR MaLR -4 538 1 779 247 72 0 chr1 94892515 94892709 -147771644 + MER58A DNA MER1_type 1 208 -16 21 36 0 0 chr1 94893027 94893055 -147771298 + AT_rich Low_complexity Low_complexity 1 28 0 266 299 11 0 chr1 94893405 94893492 -147770861 + LTR16A LTR ERVL 165 252 -198 1036 302 84 24 chr1 94893787 94894540 -147769813 + HERV16 LTR ERVL 702 3537 -1948 430 344 46 31 chr1 94894541 94894867 -147769486 + HERV16 LTR ERVL 3281 3611 -1385 306 0 0 0 chr1 94895075 94895109 -147769244 + (A)n Simple_repeat Simple_repeat 1 34 0 321 333 128 19 chr1 94896057 94896213 -147768140 + MIR3 SINE MIR 30 202 -6 246 270 0 95 chr1 94896495 94896621 -147767732 + L2 LINE L2 3156 3269 -3 11581 151 23 15 chr1 94897231 94899194 -147765159 + Ricksha_c DNA DNA 9 1987 -59 3418 30 0 0 chr1 94899266 94899669 -147764684 - L1PA3 LINE L1 0 6155 5753 2406 80 0 6 chr1 94899674 94899987 -147764366 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 94900079 94900100 -147764253 + AT_rich Low_complexity Low_complexity 1 21 0 2826 188 19 21 chr1 94900572 94901135 -147763218 + MER68 LTR ERV1 1 562 0 202 286 86 0 chr1 94901678 94901748 -147762605 + MIR SINE MIR 180 255 -7 221 366 107 0 chr1 94901932 94902044 -147762309 - L2 LINE L2 -8 3264 3141 2810 7 0 0 chr1 94902911 94903220 -147761133 + AluY SINE Alu 1 309 -2 791 95 0 240 chr1 94903361 94903582 -147760771 + L1P LINE L1 3613 3780 -2366 200 306 0 0 chr1 94903744 94903793 -147760560 - MIR SINE MIR -213 49 1 287 280 30 40 chr1 94903842 94903942 -147760411 - L2 LINE L2 -5 3267 3169 248 239 318 0 chr1 94904174 94904262 -147760091 - L2 LINE L2 -6 3307 3192 221 259 49 62 chr1 94904289 94904370 -147759983 + L2 LINE L2 2563 2642 -672 188 349 61 57 chr1 94904547 94904776 -147759577 + L2 LINE L2 2831 3060 -212 195 293 49 37 chr1 94904870 94904952 -147759401 + L2 LINE L2 3229 3311 -2 203 331 40 48 chr1 94905586 94905710 -147758643 + L2 LINE L2 2857 2979 -293 180 336 99 32 chr1 94906003 94906256 -147758097 - L2 LINE L2 -196 3076 2807 1084 191 42 5 chr1 94907282 94907497 -147756856 + MER58A DNA MER1_type 1 223 -1 189 240 0 80 chr1 94908211 94908261 -147756092 + L2 LINE L2 3227 3272 0 619 270 86 19 chr1 94909068 94909302 -147755051 + MIR SINE MIR 19 262 0 3024 171 46 33 chr1 94909658 94910353 -147754000 + LTR1 LTR ERV1 18 785 0 510 302 29 11 chr1 94910722 94910906 -147753447 + MIR SINE MIR 12 198 -64 3015 64 64 0 chr1 94911617 94912025 -147752328 + L1PA8 LINE L1 5726 6159 -13 26 0 0 0 chr1 94912025 94912051 -147752302 + AT_rich Low_complexity Low_complexity 1 26 0 455 341 134 25 chr1 94912254 94912650 -147751703 + L2 LINE L2 2469 2907 -407 525 294 72 26 chr1 94912684 94912878 -147751475 - MIR SINE MIR -1 261 59 390 303 123 43 chr1 94912887 94913164 -147751189 + L2 LINE L2 2947 3245 -68 373 365 57 21 chr1 94913210 94913402 -147750951 - L3 LINE CR1 -125 1452 1254 228 286 130 0 chr1 94913987 94914064 -147750289 - L3 LINE CR1 -3 1574 1488 656 303 74 33 chr1 94914103 94914347 -147750006 + MIR SINE MIR 3 256 -6 280 246 16 0 chr1 94914349 94914410 -147749943 - L3 LINE CR1 -125 1452 1391 2017 131 0 3 chr1 94915266 94915579 -147748774 + AluSx SINE Alu 1 312 0 678 78 0 0 chr1 94916088 94916178 -147748175 + L1PA10 LINE L1 6071 6160 -8 1644 174 169 8 chr1 94916245 94916613 -147747740 - MSTA LTR MaLR -1 427 1 187 265 69 49 chr1 94916692 94916794 -147747559 - L2 LINE L2 -15 3298 3195 888 246 10 65 chr1 94916904 94917197 -147747156 + MER46C DNA MER2_type 1 277 -61 1253 192 79 7 chr1 94917498 94917790 -147746563 + MER33 DNA MER1_type 12 324 0 616 226 110 103 chr1 94918937 94919243 -147745110 + LTR37B LTR ERV1 9 320 -148 1427 154 0 17 chr1 94919243 94919483 -147744870 + MER46A DNA MER2_type 1 236 0 616 226 110 103 chr1 94919483 94919631 -147744722 + LTR37B LTR ERV1 320 466 -2 22 35 0 0 chr1 94919804 94919833 -147744520 + AT_rich Low_complexity Low_complexity 1 29 0 635 264 68 23 chr1 94919862 94920082 -147744271 - L2 LINE L2 -3 3310 3081 4012 264 204 33 chr1 94920349 94922292 -147742061 - L2 LINE L2 -281 3032 740 1260 139 9 40 chr1 94922292 94922482 -147741871 - MER1B DNA MER1_type -2427 285 101 3125 77 33 7 chr1 94922482 94922912 -147741441 + MLT2A1 LTR ERVL 4 444 0 1260 139 9 40 chr1 94922912 94922944 -147741409 - MER1B DNA MER1_type -2611 101 70 2479 93 0 0 chr1 94923971 94924283 -147740070 + AluSx SINE Alu 1 312 0 1694 163 14 0 chr1 94925579 94925856 -147738497 + AluJo SINE Alu 1 281 -31 289 283 220 6 chr1 94927518 94927695 -147736658 + MLT1K LTR MaLR 374 588 0 237 324 42 99 chr1 94927855 94927997 -147736356 - L2 LINE L2 -1 3271 3138 514 324 131 4 chr1 94928475 94928950 -147735403 + L1M4 LINE L1 2177 2711 -3435 410 301 20 30 chr1 94928981 94929184 -147735169 + L1ME3A LINE L1 5746 5946 -224 187 329 41 14 chr1 94929414 94929487 -147734866 + MIR SINE MIR 17 91 -171 3861 134 27 14 chr1 94929621 94930283 -147734070 + L1MA4 LINE L1 5338 6008 -292 * 16121 172 39 18 chr1 94930282 94935278 -147729075 + L1MB1 LINE L1 36 5162 -1700 2275 73 0 30 chr1 94935278 94935579 -147728774 + AluY SINE Alu 4 295 -16 16121 172 39 18 chr1 94935579 94936489 -147727864 + L1MB1 LINE L1 5162 6052 -810 2371 165 15 35 chr1 94936584 94937090 -147727263 + L1MB1 LINE L1 6380 6872 -12 201 277 50 109 chr1 94939002 94939204 -147725149 + L2 LINE L2 3124 3313 0 418 320 78 35 chr1 94939369 94939600 -147724753 + L2 LINE L2 2295 2535 -779 440 343 69 46 chr1 94939624 94940319 -147724034 - L2 LINE L2 -2 3270 2559 458 144 44 0 chr1 94940522 94940612 -147723741 - MER53 DNA DNA 0 189 96 319 361 96 51 chr1 94940613 94940945 -147723408 + L2 LINE L2 2923 3269 -3 194 413 16 0 chr1 94940974 94941095 -147723258 + L2 LINE L2 2632 2754 -560 492 257 224 0 chr1 94941177 94941329 -147723024 + MIR SINE MIR 21 206 -56 1140 229 103 42 chr1 94942570 94942997 -147721356 + LTR37B LTR ERV1 10 462 -6 453 346 111 57 chr1 94944309 94944734 -147719619 + L2 LINE L2 2814 3261 -11 195 42 0 0 chr1 94944767 94944791 -147719562 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1760 200 64 98 chr1 94944909 94944933 -147719420 + L1MC5 LINE L1 6788 6811 -1150 2157 142 21 6 chr1 94944933 94945265 -147719088 - MER1B DNA MER1_type 0 337 1 1760 200 64 98 chr1 94945265 94945991 -147718362 + L1MC5 LINE L1 6811 7512 -449 285 241 88 60 chr1 94946050 94946266 -147718087 + L1ME3A LINE L1 5949 6170 0 256 336 66 0 chr1 94946281 94946403 -147717950 + HAL1 LINE L1 1 130 -2377 212 109 109 0 chr1 94946502 94946557 -147717796 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 3018 29 0 29 chr1 94946557 94946940 -147717413 - L1PA4 LINE L1 0 6155 5784 25 0 0 0 chr1 94947360 94947385 -147716968 + AT_rich Low_complexity Low_complexity 1 25 0 518 223 8 52 chr1 94948021 94948213 -147716140 + L1ME1 LINE L1 5821 6015 -149 673 210 19 0 chr1 94948230 94948392 -147715961 + L1MA10 LINE L1 6168 6332 -2 308 244 23 12 chr1 94950458 94950544 -147713809 - 7SLRNA srpRNA srpRNA -10 310 224 684 209 0 8 chr1 94950556 94950685 -147713668 - FLAM_A SINE Alu -4 129 2 473 195 70 79 chr1 94950841 94950980 -147713373 + L1MA10 LINE L1 5945 6084 -245 1866 114 228 8 chr1 94950980 94951331 -147713022 + MSTA LTR MaLR 1 428 0 473 195 70 79 chr1 94951331 94951423 -147712930 + L1MA10 LINE L1 6084 6324 -5 1524 105 156 0 chr1 94951694 94951974 -147712379 + AluSx SINE Alu 1 302 0 313 318 23 0 chr1 94952006 94952094 -147712259 - L2 LINE L2 -33 3280 3191 303 355 57 0 chr1 94952328 94952452 -147711901 + L1MC4 LINE L1 6653 6783 -1259 911 295 63 76 chr1 94952657 94952803 -147711550 + MLT1K LTR MaLR 71 217 -371 1986 92 8 0 chr1 94952803 94953065 -147711288 + AluSc SINE Alu 1 264 -45 911 295 63 76 chr1 94953065 94953443 -147710910 + MLT1K LTR MaLR 217 588 0 487 331 0 6 chr1 94953444 94953601 -147710752 + L2 LINE L2 2883 3038 -234 222 369 60 12 chr1 94953769 94953853 -147710500 + L2 LINE L2 3132 3219 -53 1239 258 26 73 chr1 94953865 94954331 -147710022 + LTR40b LTR ERVL 4 447 -15 1381 198 116 101 chr1 94954336 94954643 -147709710 + HERVL40 LTR ERVL 1 319 -5211 1306 186 50 40 chr1 94954643 94954983 -147709370 + AluJb SINE Alu 1 312 0 1381 198 116 101 chr1 94954983 94955140 -147709213 + HERVL40 LTR ERVL 319 472 -5058 190 345 118 0 chr1 94957276 94957386 -147706967 + L2 LINE L2 3150 3272 0 4959 337 43 24 chr1 94957507 94960259 -147704094 + ERVL LTR ERVL 2324 5126 -638 414 319 21 2 chr1 94960298 94960467 -147703886 + ERVL LTR ERVL 4720 4887 -109 659 348 40 16 chr1 94960485 94960936 -147703417 + L1MC1 LINE L1 2581 3042 -3104 5720 173 51 25 chr1 94960955 94962241 -147702112 + L1MC1 LINE L1 4075 5327 -1006 1484 183 7 11 chr1 94962241 94962539 -147701814 + AluJo SINE Alu 11 307 0 216 0 0 0 chr1 94962539 94962563 -147701790 + (CCA)n Simple_repeat Simple_repeat 1 24 0 5720 173 51 25 chr1 94962563 94963336 -147701017 + L1MC1 LINE L1 5326 6212 -121 295 263 66 29 chr1 94963329 94963466 -147700887 + L1MC/D LINE L1 3776 3917 -2229 * 1323 179 20 8 chr1 94963552 94963798 -147700555 - AluJb SINE Alu -14 298 50 1375 289 58 35 chr1 94963830 94964625 -147699728 + L1MC/D LINE L1 4016 4859 -1302 3130 162 40 27 chr1 94964625 94965219 -147699134 - MER7C DNA MER2_type 0 602 1 1375 289 58 35 chr1 94965219 94965793 -147698560 + L1MC/D LINE L1 4859 5418 -743 959 221 62 19 chr1 94965804 94966062 -147698291 + L1MC/D LINE L1 5541 5809 -1999 23 54 0 0 chr1 94966469 94966506 -147697847 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 94966713 94966748 -147697605 + AT_rich Low_complexity Low_complexity 1 35 0 3013 155 64 28 chr1 94966957 94967538 -147696815 - MER7C DNA MER2_type 0 602 1 705 272 30 24 chr1 94967579 94968112 -147696241 + L1MC4a LINE L1 4885 5418 -743 1870 229 56 42 chr1 94968123 94968712 -147695641 + L1MC4a LINE L1 5541 6137 -1671 23 54 0 0 chr1 94968745 94968782 -147695571 + AT_rich Low_complexity Low_complexity 1 37 0 221 305 49 12 chr1 94969186 94969268 -147695085 + L2 LINE L2 1128 1212 -2102 192 300 0 0 chr1 94969548 94969598 -147694755 - MER5A DNA MER1_type -72 117 68 757 196 0 8 chr1 94969604 94969737 -147694616 - FLAM_C SINE Alu -11 132 1 36 0 0 0 chr1 94969737 94969773 -147694580 + AT_rich Low_complexity Low_complexity 1 36 0 186 265 0 20 chr1 94969773 94969822 -147694531 - MER5B DNA MER1_type -129 49 2 2263 104 0 0 chr1 94969926 94970235 -147694118 + AluY SINE Alu 1 309 -2 923 267 32 41 chr1 94970237 94970564 -147693789 + L2 LINE L2 2635 2955 -317 189 0 0 0 chr1 94970571 94970592 -147693761 + (TGG)n Simple_repeat Simple_repeat 1 21 0 627 251 80 0 chr1 94970593 94970756 -147693597 - MIR SINE MIR -6 256 81 2181 131 0 0 chr1 94971174 94971486 -147692867 + AluSx SINE Alu 1 312 0 631 217 66 24 chr1 94971758 94971970 -147692383 - L1M4 LINE L1 -3137 3009 2789 203 316 52 104 chr1 94972026 94972333 -147692020 + L2 LINE L2 2188 2478 -836 1262 161 125 54 chr1 94973509 94973789 -147690564 - AluJo SINE Alu -2 300 1 204 97 0 0 chr1 94974087 94974118 -147690235 + (TG)n Simple_repeat Simple_repeat 2 32 0 680 205 19 39 chr1 94975280 94975436 -147688917 + MIR SINE MIR 99 251 -11 196 300 11 33 chr1 94976527 94976617 -147687736 - L3b LINE CR1 -168 1415 1328 1322 176 33 92 chr1 94976899 94977205 -147687148 + AluJo SINE Alu 1 288 -24 414 241 51 108 chr1 94977634 94977695 -147686658 - MIR3 SINE MIR -10 198 135 2186 125 0 0 chr1 94977695 94978000 -147686353 - AluSg SINE Alu -5 305 1 414 241 51 108 chr1 94978000 94978133 -147686220 - MIR3 SINE MIR -73 135 15 623 261 62 58 chr1 94979019 94979276 -147685077 + MIR SINE MIR 1 258 -4 25 108 0 0 chr1 94979276 94979378 -147684975 + AT_rich Low_complexity Low_complexity 1 102 0 34 0 0 0 chr1 94980434 94980468 -147683885 + AT_rich Low_complexity Low_complexity 1 34 0 263 196 0 0 chr1 94981039 94981085 -147683268 - L2 LINE L2 -3 3310 3265 182 321 156 28 chr1 94981194 94981303 -147683050 - L2 LINE L2 -2 3270 3148 291 340 39 43 chr1 94983329 94983585 -147680768 + L2 LINE L2 2804 3058 -214 1875 155 24 21 chr1 94983950 94984324 -147680029 + THE1C LTR MaLR 1 375 0 10110 119 11 30 chr1 94984324 94985935 -147678418 + THE1C-int LTR MaLR 1 1580 0 1929 143 32 22 chr1 94985935 94986306 -147678047 + THE1C LTR MaLR 1 375 0 227 239 22 0 chr1 94986397 94986443 -147677910 - L2 LINE L2 -20 3252 3206 275 324 0 0 chr1 94986907 94986975 -147677378 + MIR SINE MIR 28 95 -167 914 196 0 18 chr1 94987250 94987418 -147676935 - FRAM SINE Alu -11 165 1 207 92 0 138 chr1 94987723 94987788 -147676565 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 723 208 0 7 chr1 94988392 94988536 -147675817 - FLAM_C SINE Alu 0 143 1 1799 243 109 2 chr1 94988602 94989162 -147675191 + L1MA8 LINE L1 5653 6272 -19 23 78 0 0 chr1 94989286 94989337 -147675016 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr1 94990422 94990443 -147673910 + AT_rich Low_complexity Low_complexity 1 21 0 763 309 40 16 chr1 94991945 94992197 -147672156 - MIR SINE MIR -3 259 2 1577 144 25 11 chr1 94993110 94993394 -147670959 + L1MB7 LINE L1 5897 6184 0 290 248 129 40 chr1 94993600 94993802 -147670551 - Zaphod DNA AcHobo -1651 2380 2161 622 205 0 8 chr1 94993803 94993925 -147670428 - FLAM_C SINE Alu -22 121 1 2728 217 69 156 chr1 94993925 94996154 -147668199 - Zaphod DNA AcHobo -1838 2193 185 2310 206 51 19 chr1 94996154 94996679 -147667674 + MLT1F LTR MaLR 1 542 0 2728 217 69 156 chr1 94996679 94996850 -147667503 - Zaphod DNA AcHobo -3846 185 1 1040 128 10 39 chr1 94997952 94998155 -147666198 - L1PA6 LINE L1 0 6154 5958 24 53 0 0 chr1 95000152 95000190 -147664163 + AT_rich Low_complexity Low_complexity 1 38 0 304 115 16 0 chr1 95000933 95000994 -147663359 + L1MA2 LINE L1 6243 6304 0 25 65 0 0 chr1 95000994 95001040 -147663313 + AT_rich Low_complexity Low_complexity 1 46 0 2376 97 0 0 chr1 95001155 95001463 -147662890 - AluSc SINE Alu -1 308 1 2259 113 0 0 chr1 95002617 95002927 -147661426 - AluSx SINE Alu -2 310 1 349 327 33 40 chr1 95003556 95003706 -147660647 + MIR SINE MIR 19 167 -95 310 250 38 0 chr1 95003903 95003983 -147660370 + MIR3 SINE MIR 109 191 -17 558 294 25 29 chr1 95005038 95005242 -147659111 + MIR SINE MIR 2 204 -58 280 298 8 0 chr1 95005242 95005363 -147658990 + (TA)n Simple_repeat Simple_repeat 1 122 0 311 188 14 14 chr1 95005412 95005481 -147658872 + MLT1L LTR MaLR 546 614 -1 263 254 14 14 chr1 95005813 95005884 -147658469 + (TA)n Simple_repeat Simple_repeat 2 72 0 2999 300 77 29 chr1 95005995 95006132 -147658221 + Charlie8 DNA MER1_type 936 1065 -1352 2437 68 0 0 chr1 95006132 95006427 -147657926 - AluY SINE Alu -16 295 1 2999 300 77 29 chr1 95006427 95007701 -147656652 + Charlie8 DNA MER1_type 1065 2415 -2 21 36 0 0 chr1 95007993 95008021 -147656332 + AT_rich Low_complexity Low_complexity 1 28 0 202 379 33 33 chr1 95008566 95008780 -147655573 - L2 LINE L2 -493 2821 2608 206 406 98 7 chr1 95008804 95008947 -147655406 - L2 LINE L2 -2 3270 3115 219 324 98 44 chr1 95009394 95009598 -147654755 - L2 LINE L2 -842 2472 2258 2642 132 34 13 chr1 95009914 95010391 -147653962 + L1MB3 LINE L1 5682 6168 -15 5594 135 7 0 chr1 95011618 95012934 -147651419 + L1PA16 LINE L1 4828 6148 -18 404 259 103 63 chr1 95013342 95013478 -147650875 - MIR SINE MIR -70 192 46 2243 99 10 0 chr1 95013478 95013770 -147650583 + AluSg SINE Alu 1 295 -15 404 259 103 63 chr1 95013770 95013807 -147650546 - MIR SINE MIR -216 46 12 301 297 77 38 chr1 95013914 95014121 -147650232 + MIR SINE MIR 3 216 -46 2234 114 0 0 chr1 95014211 95014519 -147649834 + AluSg SINE Alu 1 308 -2 29 47 0 0 chr1 95014589 95014632 -147649721 + AT_rich Low_complexity Low_complexity 1 43 0 2201 179 52 5 chr1 95014643 95015050 -147649303 + MSTB LTR MaLR 1 426 0 188 316 0 40 chr1 95015306 95015382 -147648971 - L2 LINE L2 -13 3259 3187 28 0 0 0 chr1 95015951 95015979 -147648374 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 95016014 95016043 -147648310 + AT_rich Low_complexity Low_complexity 1 29 0 1304 165 143 30 chr1 95017348 95017676 -147646677 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr1 95017810 95017838 -147646515 + AT_rich Low_complexity Low_complexity 1 28 0 212 191 21 0 chr1 95017846 95017893 -147646460 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 180 167 271 0 chr1 95018276 95018324 -147646029 - MIR SINE MIR -6 256 196 28 29 0 0 chr1 95018515 95018550 -147645803 + AT_rich Low_complexity Low_complexity 1 35 0 785 294 23 5 chr1 95018555 95018776 -147645577 - MIR SINE MIR -10 252 28 249 83 0 0 chr1 95020995 95021031 -147643322 + (TG)n Simple_repeat Simple_repeat 1 36 0 244 329 0 0 chr1 95021043 95021116 -147643237 + Charlie4 DNA MER1_type 1888 1960 -1 49 76 0 0 chr1 95021508 95021613 -147642740 + AT_rich Low_complexity Low_complexity 1 105 0 610 142 75 0 chr1 95023304 95023410 -147640943 + FLAM_A SINE Alu 21 134 -8 2419 55 0 19 chr1 95023868 95024180 -147640173 - AluY SINE Alu -5 306 1 204 320 278 0 chr1 95024284 95024381 -147639972 + MIR3 SINE MIR 46 169 -39 2320 92 3 7 chr1 95024492 95024798 -147639555 + AluSx SINE Alu 1 305 -7 192 404 18 9 chr1 95024903 95025012 -147639341 - L2 LINE L2 -646 2668 2559 249 108 0 0 chr1 95025120 95025157 -147639196 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 21 36 0 0 chr1 95025279 95025307 -147639046 + AT_rich Low_complexity Low_complexity 1 28 0 19360 154 70 11 chr1 95025706 95029456 -147634897 + L1MA2 LINE L1 12 3985 -3580 17124 98 19 13 chr1 95029457 95035629 -147628724 + L1PA7 LINE L1 113 6466 -3 9400 141 25 8 chr1 95035631 95038220 -147626133 + L1MA2 LINE L1 5103 7723 0 4792 189 88 8 chr1 95038514 95039510 -147624843 - Tigger6a DNA MER2_type -7 1076 1 270 356 103 27 chr1 95039818 95040115 -147624238 + L2 LINE L2 2720 3037 -235 252 139 66 8 chr1 95040237 95040359 -147623994 + (TA)n Simple_repeat Simple_repeat 1 129 0 1328 160 22 4 chr1 95040401 95040632 -147623721 - MER46A DNA MER2_type -1 235 1 2409 52 0 3 chr1 95040652 95040941 -147623412 + AluY SINE Alu 1 288 -23 21 0 0 0 chr1 95040941 95040962 -147623391 + AT_rich Low_complexity Low_complexity 1 21 0 221 127 0 70 chr1 95040981 95041052 -147623301 + (TA)n Simple_repeat Simple_repeat 1 66 0 187 225 211 28 chr1 95041428 95041499 -147622854 - L2 LINE L2 -1 3312 3229 21 57 0 0 chr1 95041921 95041956 -147622397 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 95043033 95043064 -147621289 + AT_rich Low_complexity Low_complexity 1 31 0 2985 151 19 0 chr1 95043920 95044385 -147619968 + L1M2c LINE L1 1240 1713 -5076 512 277 74 20 chr1 95045697 95045899 -147618454 - MIR SINE MIR -11 251 39 23 0 0 0 chr1 95046165 95046188 -147618165 + AT_rich Low_complexity Low_complexity 1 23 0 234 174 0 0 chr1 95046747 95046793 -147617560 + A-rich Low_complexity Low_complexity 1 46 0 2064 104 3 23 chr1 95047174 95047481 -147616872 + AluSq SINE Alu 1 301 -12 226 315 153 0 chr1 95047824 95047935 -147616418 + MIR SINE MIR 19 146 -62 186 103 0 0 chr1 95047936 95047965 -147616388 + (ATG)n Simple_repeat Simple_repeat 1 29 0 272 159 0 0 chr1 95048874 95048918 -147615435 + L1MA4 LINE L1 6252 6295 -5 240 364 63 21 chr1 95049325 95049468 -147614885 + MIR3 SINE MIR 2 150 -58 234 135 19 0 chr1 95050379 95050431 -147613922 + L1ME4a LINE L1 6067 6119 -2 1101 146 0 16 chr1 95050944 95051131 -147613222 - L1PA13 LINE L1 -1174 4972 4788 6126 79 24 5 chr1 95051131 95052263 -147612090 + L1PA13 LINE L1 4996 6145 -18 272 304 39 29 chr1 95052470 95052572 -147611781 - MIR3 SINE MIR -39 169 67 24 32 0 0 chr1 95052627 95052658 -147611695 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr1 95053305 95053340 -147611013 + AT_rich Low_complexity Low_complexity 1 35 0 1357 290 196 39 chr1 95054014 95054958 -147609395 + L2 LINE L2 799 1890 -1424 371 223 0 10 chr1 95054997 95055100 -147609253 + CT-rich Low_complexity Low_complexity 1 102 0 446 286 95 5 chr1 95055447 95055657 -147608696 + L1 LINE L1 4778 5006 -1140 1874 98 3 61 chr1 95055908 95056226 -147608127 + AluSx SINE Alu 5 305 0 21 0 0 0 chr1 95056360 95056381 -147607972 + AT_rich Low_complexity Low_complexity 1 21 0 452 268 83 67 chr1 95056873 95057186 -147607167 - L1MC/D LINE L1 -2015 5793 5476 813 179 121 68 chr1 95057230 95057437 -147606916 - AluJo SINE Alu -9 303 86 575 266 49 86 chr1 95057601 95057905 -147606448 - MER102b DNA MER1_type -10 331 39 1755 125 0 19 chr1 95057992 95058256 -147606097 + AluSx SINE Alu 35 293 -19 1957 246 23 53 chr1 95058365 95058935 -147605418 - MLT2B3 LTR ERVL -1 553 1 2764 132 61 26 chr1 95058935 95059224 -147605129 - ERVL-B3 LTR ERVL -8 5756 5478 2138 139 0 0 chr1 95059224 95059533 -147604820 + AluSx SINE Alu 4 312 0 2764 132 61 26 chr1 95059533 95059567 -147604786 - ERVL-B3 LTR ERVL -286 5478 5447 360 0 0 0 chr1 95059567 95059607 -147604746 + (CA)n Simple_repeat Simple_repeat 1 40 0 2764 132 61 26 chr1 95059607 95059775 -147604578 - ERVL-B3 LTR ERVL -317 5447 5247 945 182 7 30 chr1 95059777 95060050 -147604303 + MLT1A2 LTR MaLR 4 374 0 4498 131 26 6 chr1 95060051 95060732 -147603621 - ERVL-B3 LTR ERVL -513 5251 4557 1401 137 41 48 chr1 95060857 95061149 -147603204 - MER33 DNA MER1_type 0 324 35 307 240 200 32 chr1 95061162 95061287 -147603066 + MIR SINE MIR 68 213 -49 674 321 75 17 chr1 95061711 95062060 -147602293 + L2 LINE L2 2945 3313 0 285 244 130 26 chr1 95062186 95062301 -147602052 + L2 LINE L2 3187 3313 0 280 136 0 0 chr1 95064248 95064292 -147600061 + U5 snRNA snRNA 1 44 -72 189 0 0 0 chr1 95064654 95064675 -147599678 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 498 292 103 21 chr1 95067255 95067488 -147596865 - MIR SINE MIR 0 262 11 21 0 0 0 chr1 95067869 95067890 -147596463 + AT_rich Low_complexity Low_complexity 1 21 0 2354 113 26 16 chr1 95070856 95071236 -147593117 - L1MA4A LINE L1 -2 6301 5918 599 286 93 91 chr1 95071275 95071789 -147592564 - MER34 LTR ERV1 -27 515 1 4613 135 43 17 chr1 95071789 95072063 -147592290 - L1MA4A LINE L1 -382 5921 5656 2221 87 3 46 chr1 95072063 95072386 -147591967 - AluSq SINE Alu -2 311 3 4613 135 43 17 chr1 95072386 95073255 -147591098 - L1MA4A LINE L1 -647 5656 4742 1751 188 3 0 chr1 95073255 95073558 -147590795 - AluJo SINE Alu -8 304 1 4613 135 43 17 chr1 95073558 95073758 -147590595 - L1MA4A LINE L1 -1561 4742 4549 271 238 16 0 chr1 95074029 95074092 -147590261 + MIR3 SINE MIR 95 158 -50 857 307 117 3 chr1 95074909 95075277 -147589076 + L2 LINE L2 2902 3311 -2 2103 80 17 0 chr1 95076487 95076774 -147587579 - L1PA11 LINE L1 0 6174 5883 2330 33 3 36 chr1 95077111 95077414 -147586939 + AluY SINE Alu 1 293 -18 266 259 136 0 chr1 95078067 95078148 -147586205 - MIR3 SINE MIR -24 184 93 777 129 0 16 chr1 95078720 95078844 -147585509 + FLAM_C SINE Alu 1 122 -11 27 29 0 0 chr1 95078847 95078881 -147585472 + AT_rich Low_complexity Low_complexity 1 34 0 1446 225 64 102 chr1 95079171 95079835 -147584518 - L1MEc LINE L1 -3549 2666 2065 231 224 0 0 chr1 95079835 95079884 -147584469 - MER58A DNA MER1_type 0 224 176 1446 225 64 102 chr1 95079884 95080457 -147583896 - L1MEc LINE L1 -4150 2065 1472 414 255 0 11 chr1 95080487 95080581 -147583772 + MIR SINE MIR 54 146 -116 2227 86 0 44 chr1 95081301 95081616 -147582737 + AluY SINE Alu 1 301 -10 249 250 36 0 chr1 95081646 95081702 -147582651 + L2 LINE L2 3242 3299 -14 5102 155 34 1 chr1 95082038 95082916 -147581437 + L1MB3 LINE L1 5268 6174 -9 184 387 80 22 chr1 95084099 95084236 -147580117 + L2 LINE L2 3104 3248 -24 345 310 237 40 chr1 95084420 95084917 -147579436 - L2 LINE L2 -672 2642 2048 849 215 77 19 chr1 95084995 95085204 -147579149 + MER58A DNA MER1_type 4 224 0 244 217 22 0 chr1 95085266 95085312 -147579041 - MER91B DNA MER1_type -131 59 13 21 0 0 0 chr1 95085540 95085561 -147578792 + AT_rich Low_complexity Low_complexity 1 21 0 2261 90 0 0 chr1 95085983 95086271 -147578082 - AluY SINE Alu -13 298 11 333 286 11 38 chr1 95086414 95086599 -147577754 + GA-rich Low_complexity Low_complexity 1 180 0 437 241 82 59 chr1 95086734 95086904 -147577449 - L2 LINE L2 -2204 1110 937 222 118 0 0 chr1 95086940 95086974 -147577379 + (TTCTCC)n Simple_repeat Simple_repeat 6 39 0 781 264 85 19 chr1 95086977 95087284 -147577069 + L2 LINE L2 2037 2363 -951 510 319 54 24 chr1 95087308 95087640 -147576713 + L1ME LINE L1 26 367 -5703 210 218 36 0 chr1 95087640 95087695 -147576658 + GA-rich Low_complexity Low_complexity 5 61 0 259 278 87 48 chr1 95087695 95087821 -147576532 + L1ME LINE L1 329 459 -5611 303 291 102 24 chr1 95088127 95088254 -147576099 + L1ME LINE L1 530 666 -5404 1608 224 154 4 chr1 95088302 95088816 -147575537 + L1ME LINE L1 2570 3160 -2920 1126 260 66 38 chr1 95088910 95089276 -147575077 + L2 LINE L2 2411 2786 -528 343 0 0 0 chr1 95089285 95089327 -147575026 - L1PA3 LINE L1 -3 6152 6111 1263 14 0 0 chr1 95089327 95089474 -147574879 + L1P2 LINE L1 5645 5791 -364 508 185 46 92 chr1 95089607 95089802 -147574551 - L1MC5 LINE L1 -770 7191 7006 1892 232 99 85 chr1 95089802 95090531 -147573822 + MER21B LTR ERV1 1 739 -124 14550 195 29 18 chr1 95090588 95095399 -147568954 - L1PA13 LINE L1 -1853 4944 1 28 29 0 0 chr1 95095642 95095677 -147568676 + AT_rich Low_complexity Low_complexity 1 35 0 235 269 84 42 chr1 95096550 95096669 -147567684 + MIR SINE MIR 65 188 -74 2077 37 4 4 chr1 95096852 95097144 -147567209 - AluY SINE Alu 0 326 35 27 0 0 0 chr1 95097508 95097535 -147566818 + AT_rich Low_complexity Low_complexity 1 27 0 285 88 147 59 chr1 95097537 95097605 -147566748 - L1MA4 LINE L1 -29 6271 6198 2005 107 0 75 chr1 95097844 95098163 -147566190 + AluSp SINE Alu 1 295 -18 458 105 53 13 chr1 95098254 95098330 -147566023 + MADE1 DNA Mariner 1 79 -1 539 310 47 24 chr1 95098751 95098964 -147565389 - MIR SINE MIR -40 222 5 1618 166 124 27 chr1 95099127 95099458 -147564895 + MLT1A1 LTR MaLR 1 363 -2 24 0 0 0 chr1 95099478 95099502 -147564851 + AT_rich Low_complexity Low_complexity 1 24 0 37 0 0 0 chr1 95099511 95099548 -147564805 + AT_rich Low_complexity Low_complexity 1 37 0 6192 143 121 102 chr1 95099727 95101395 -147562958 + pTR5 LTR ERV1 741 2438 0 182 326 44 59 chr1 95102026 95102161 -147562192 + L2 LINE L2 2890 3022 -250 418 234 78 16 chr1 95102499 95102627 -147561726 - MIR SINE MIR -13 249 114 1884 155 3 16 chr1 95102895 95103211 -147561142 + AluJo SINE Alu 1 312 0 198 103 0 0 chr1 95105486 95105515 -147558838 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 1645 172 89 15 chr1 95106528 95106866 -147557487 + MLT1A1 LTR MaLR 1 363 -2 697 339 21 9 chr1 95107168 95107401 -147556952 + MIR SINE MIR 20 255 -7 2317 91 0 7 chr1 95107410 95107706 -147556647 - AluSg SINE Alu -16 294 1 297 318 119 52 chr1 95107927 95108418 -147555935 - L2 LINE L2 -99 3214 2690 7286 45 1 0 chr1 95109192 95110643 -147553710 + L1PA6 LINE L1 4698 6150 -4 412 213 88 29 chr1 95111253 95111389 -147552964 + HAL1b LINE L1 332 475 -873 412 313 138 61 chr1 95111410 95112119 -147552234 + L2 LINE L2 1820 2583 -731 669 288 90 0 chr1 95112322 95112534 -147551819 + MIR SINE MIR 31 261 -1 188 268 0 0 chr1 95112860 95112901 -147551452 + L2 LINE L2 3224 3264 -8 24 96 0 0 chr1 95113271 95113344 -147551009 + AT_rich Low_complexity Low_complexity 1 73 0 1542 199 46 0 chr1 95115818 95116100 -147548253 - AluJo SINE Alu -14 298 4 201 274 212 18 chr1 95116689 95116802 -147547551 + L2 LINE L2 3179 3313 0 232 311 56 25 chr1 95118135 95118296 -147546057 - L1M4 LINE L1 -2311 3835 3670 620 288 120 38 chr1 95118464 95119693 -147544660 - L1M4 LINE L1 -2670 3476 2148 319 253 113 54 chr1 95120019 95120205 -147544148 - HAL1b LINE L1 -415 933 737 566 322 59 28 chr1 95120253 95120713 -147543640 - HAL1b LINE L1 -706 642 169 * 26233 42 6 1 chr1 95120706 95124782 -147539571 - L1PA4 LINE L1 0 6155 2061 543 246 8 30 chr1 95125901 95126035 -147538318 - MIR SINE MIR -118 144 14 796 284 24 0 chr1 95126649 95126857 -147537496 - MIR SINE MIR -9 253 41 277 272 202 47 chr1 95126983 95127196 -147537157 + L2 LINE L2 2146 2391 -923 607 330 147 4 chr1 95127214 95127472 -147536881 + L2 LINE L2 2677 2971 -343 522 185 17 73 chr1 95127533 95127695 -147536658 + MER77 LTR ERV1 472 673 -7 2156 113 72 20 chr1 95127736 95128082 -147536271 + THE1B LTR MaLR 1 364 0 212 232 71 18 chr1 95128235 95128291 -147536062 + L2 LINE L2 2978 3036 -236 310 255 20 20 chr1 95128491 95128593 -147535760 + GA-rich Low_complexity Low_complexity 2 103 0 815 285 40 12 chr1 95129423 95129672 -147534681 - MIR SINE MIR -5 257 2 468 231 98 122 chr1 95130347 95130684 -147533669 + HAL1 LINE L1 39 367 -2140 261 325 0 12 chr1 95130835 95130915 -147533438 + HAL1 LINE L1 586 664 -1843 2319 253 153 49 chr1 95130936 95131046 -147533307 + HAL1 LINE L1 721 818 -1689 1871 146 20 10 chr1 95131046 95131341 -147533012 - AluSx SINE Alu -14 298 1 2319 253 153 49 chr1 95131341 95131585 -147532768 + HAL1 LINE L1 818 1035 -1472 2572 61 0 0 chr1 95131585 95131896 -147532457 + AluY SINE Alu 1 311 0 2319 253 153 49 chr1 95131896 95133150 -147531203 + HAL1 LINE L1 1035 2498 -9 21 57 0 0 chr1 95133633 95133668 -147530685 + AT_rich Low_complexity Low_complexity 1 35 0 278 306 182 0 chr1 95133842 95133963 -147530390 + MIR SINE MIR 107 249 -13 347 325 95 20 chr1 95134028 95134228 -147530125 + MIR SINE MIR 29 243 -19 750 235 183 0 chr1 95135655 95135868 -147528485 + MIR SINE MIR 10 261 -1 356 265 142 31 chr1 95136914 95137076 -147527277 - MER5A DNA MER1_type -3 186 7 958 183 44 0 chr1 95137238 95137418 -147526935 - MER5A DNA MER1_type 0 189 2 261 86 0 0 chr1 95137479 95137514 -147526839 - MER5B DNA MER1_type -13 165 131 2210 98 3 46 chr1 95137515 95137695 -147526658 - AluSq SINE Alu 0 313 152 6035 23 0 0 chr1 95137695 95138392 -147525961 - L1PA3 LINE L1 -3 6152 5456 2210 98 3 46 chr1 95138392 95138538 -147525815 - AluSq SINE Alu -161 152 1 439 203 101 72 chr1 95138538 95138676 -147525677 - MER5B DNA MER1_type -33 145 4 194 268 0 31 chr1 95140374 95140471 -147523882 + (TA)n Simple_repeat Simple_repeat 1 94 0 2080 130 49 3 chr1 95141585 95141930 -147522423 + MER46B DNA MER2_type 1 236 0 199 226 16 48 chr1 95142105 95142167 -147522186 + L2 LINE L2 3254 3313 0 518 330 93 40 chr1 95142304 95142759 -147521594 + L2 LINE L2 2791 3268 -4 290 26 26 0 chr1 95147098 95147137 -147517216 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 269 261 109 43 chr1 95147146 95147238 -147517115 + L2 LINE L2 3179 3276 -37 1882 190 30 89 chr1 95147481 95147612 -147516741 - L1MC4a LINE L1 -2 7806 7669 2264 110 13 0 chr1 95147612 95147920 -147516433 + AluSx SINE Alu 1 312 0 1882 190 30 89 chr1 95147920 95148414 -147515939 - L1MC4a LINE L1 -139 7669 7218 403 271 9 19 chr1 95149164 95149271 -147515082 - L2 LINE L2 -19 3294 3189 297 361 96 8 chr1 95149591 95149851 -147514502 - L2 LINE L2 -970 2344 2062 238 297 137 36 chr1 95149895 95150056 -147514297 - MIR SINE MIR -4 258 68 2112 134 0 25 chr1 95150056 95150376 -147513977 - AluSx SINE Alu 0 312 1 238 297 137 36 chr1 95150376 95150433 -147513920 - MIR SINE MIR -194 68 18 312 48 0 0 chr1 95150438 95150480 -147513873 + (TC)n Simple_repeat Simple_repeat 1 42 0 257 356 48 7 chr1 95150767 95150913 -147513440 - L2 LINE L2 0 3272 3121 991 246 88 26 chr1 95151075 95151494 -147512859 - L1MC4 LINE L1 -1 8041 7597 487 226 19 9 chr1 95151501 95151607 -147512746 - MER81 DNA DNA -2 112 6 40549 54 3 1 chr1 95151705 95157834 -147506519 - L1PA5 LINE L1 -9 6145 2 2196 105 0 14 chr1 95157837 95158133 -147506220 - AluSg SINE Alu -18 292 1 415 278 105 51 chr1 95158183 95158504 -147505849 + L1ME4a LINE L1 5337 5714 -407 440 219 101 56 chr1 95158539 95158845 -147505508 + L1ME4a LINE L1 5798 6117 -4 1982 108 42 52 chr1 95159580 95159887 -147504466 + AluSp SINE Alu 1 304 -9 629 322 43 4 chr1 95160873 95161103 -147503250 - MIR SINE MIR -4 258 20 499 298 30 8 chr1 95161110 95161241 -147503112 - MER5A DNA MER1_type 0 189 56 186 229 0 0 chr1 95161509 95161544 -147502809 - MIR SINE MIR -18 244 210 1650 116 64 61 chr1 95161986 95162297 -147502056 - AluJb SINE Alu 0 312 1 3522 134 37 8 chr1 95163211 95163810 -147500543 - L1PA15 LINE L1 0 6165 5550 23 54 0 0 chr1 95164334 95164371 -147499982 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr1 95166715 95166741 -147497612 + AT_rich Low_complexity Low_complexity 1 26 0 746 307 25 0 chr1 95166977 95167179 -147497174 + MIR SINE MIR 46 252 -10 199 270 180 0 chr1 95167213 95167313 -147497040 - MIR SINE MIR -101 161 44 827 341 75 7 chr1 95168139 95168555 -147495798 + L3 LINE CR1 273 716 -861 583 225 9 0 chr1 95168563 95168674 -147495679 - MER81 DNA DNA -2 112 1 184 320 0 0 chr1 95168738 95168788 -147495565 - L2 LINE L2 -354 2918 2869 3543 128 68 104 chr1 95168841 95169663 -147494690 - L1MB3 LINE L1 0 6183 5333 13109 34 6 1 chr1 95169663 95172014 -147492339 - L1PA4 LINE L1 0 6155 3795 1840 145 4 7 chr1 95172015 95172291 -147492062 - AluSx SINE Alu -37 275 1 3543 128 68 104 chr1 95172291 95172421 -147491932 - L1MB3 LINE L1 -849 5334 5263 310 358 202 13 chr1 95172442 95173067 -147491286 - L2 LINE L2 -505 2809 2067 350 291 79 53 chr1 95173078 95173267 -147491086 + L3 LINE CR1 1333 1526 -51 430 182 371 0 chr1 95174252 95174384 -147489969 + MIR SINE MIR 54 234 -28 442 256 83 44 chr1 95174746 95174926 -147489427 - MIR3 SINE MIR -2 206 20 229 301 82 0 chr1 95175160 95175233 -147489120 - L2 LINE L2 -26 3246 3168 1456 212 40 40 chr1 95176549 95176680 -147487673 - L1ME2 LINE L1 -47 6117 5987 195 42 0 0 chr1 95176680 95176704 -147487649 + (CA)n Simple_repeat Simple_repeat 2 25 0 1456 212 40 40 chr1 95176704 95176997 -147487356 - L1ME2 LINE L1 -176 5988 5693 523 246 164 77 chr1 95177007 95178018 -147486335 - L1MEc LINE L1 -4170 2968 1823 534 263 45 69 chr1 95178049 95178279 -147486074 - L1MEc LINE L1 -5075 1874 1640 2183 138 0 0 chr1 95178279 95178575 -147485778 + AluSx SINE Alu 1 296 -16 534 263 45 69 chr1 95178575 95178757 -147485596 - L1MEc LINE L1 -5309 1640 1378 526 212 26 20 chr1 95179212 95179363 -147484990 - L1MEc LINE L1 -6209 929 778 211 297 76 42 chr1 95179378 95179496 -147484857 - L2 LINE L2 -853 2461 2340 218 267 0 17 chr1 95180342 95180402 -147483951 + CT-rich Low_complexity Low_complexity 2 60 0 479 290 7 29 chr1 95180815 95180953 -147483400 + MIR SINE MIR 54 188 -74 1505 212 28 53 chr1 95181252 95181724 -147482629 + MLT1C LTR MaLR 8 467 0 261 329 79 18 chr1 95182473 95182637 -147481716 + MIR SINE MIR 78 251 -11 254 288 0 15 chr1 95182996 95183062 -147481291 + MIR3 SINE MIR 108 172 -36 441 313 124 15 chr1 95183090 95183291 -147481062 + MIR SINE MIR 30 252 -10 713 194 103 29 chr1 95183305 95183480 -147480873 - MER5A DNA MER1_type 0 189 2 1198 188 0 0 chr1 95183488 95183695 -147480658 + MER58A DNA MER1_type 1 207 -17 203 349 139 19 chr1 95184376 95184585 -147479768 + MIR SINE MIR 18 251 -11 31 26 0 0 chr1 95187499 95187537 -147476816 + AT_rich Low_complexity Low_complexity 1 38 0 2197 104 0 0 chr1 95188886 95189173 -147475180 - AluSx SINE Alu -25 287 1 2415 50 0 83 chr1 95189606 95189943 -147474410 + AluY SINE Alu 1 309 -2 387 214 28 138 chr1 95190031 95190176 -147474177 + MER63 DNA MER1_type 1 755 -81 248 360 37 48 chr1 95191777 95192049 -147472304 + L2 LINE L2 389 657 -2657 249 358 48 24 chr1 95192051 95192216 -147472137 + L2 LINE L2 1099 1267 -2047 394 190 162 28 chr1 95192274 95192416 -147471937 + LTR41 LTR ERVL 1 161 -612 1070 336 105 25 chr1 95193116 95193847 -147470506 + L2 LINE L2 1784 2573 -741 209 345 0 69 chr1 95193861 95193977 -147470376 - L2 LINE L2 -251 3021 2914 1367 169 31 4 chr1 95194020 95194275 -147470078 + MLT2C1 LTR ERVL 13 274 -123 519 188 14 7 chr1 95194292 95194430 -147469923 + (CA)n Simple_repeat Simple_repeat 2 140 0 284 300 33 0 chr1 95197070 95197160 -147467193 + L3b LINE CR1 1139 1231 -352 364 294 156 24 chr1 95197199 95197410 -147466943 - MIR SINE MIR 0 262 24 342 0 0 0 chr1 95197666 95197704 -147466649 + (CA)n Simple_repeat Simple_repeat 2 39 0 239 79 26 0 chr1 95197818 95197856 -147466497 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 372 352 47 13 chr1 95198237 95198470 -147465883 + L2 LINE L2 2809 3049 -223 1021 140 6 23 chr1 95199376 95199547 -147464806 + L1PA10 LINE L1 5990 6157 -11 219 308 67 33 chr1 95199773 95199893 -147464460 - MIR3 SINE MIR 0 208 85 23 33 0 0 chr1 95199969 95199999 -147464354 + AT_rich Low_complexity Low_complexity 1 30 0 2507 128 58 0 chr1 95200169 95200567 -147463786 - MER1A DNA MER1_type 0 529 109 741 173 8 8 chr1 95200574 95200707 -147463646 + Tigger2 DNA MER2_type 2576 2708 -10 289 93 23 0 chr1 95200707 95200750 -147463603 + MSTB2 LTR MaLR 409 452 -5 560 262 24 40 chr1 95200763 95200946 -147463407 - MIR SINE MIR -43 219 40 308 285 86 103 chr1 95200992 95201410 -147462943 + L2 LINE L2 2827 3237 -35 524 233 16 23 chr1 95201471 95201600 -147462753 + L2 LINE L2 3185 3312 -1 531 15 0 0 chr1 95201673 95201741 -147462612 - L1PA3 LINE L1 -2 6153 6086 2265 62 0 4 chr1 95201746 95202054 -147462299 + AluY SINE Alu 37 343 0 21 36 0 0 chr1 95202229 95202257 -147462096 + AT_rich Low_complexity Low_complexity 1 28 0 359 295 79 14 chr1 95202467 95202606 -147461747 - L1ME4a LINE L1 -157 5964 5817 189 184 26 0 chr1 95202691 95202729 -147461624 + L2 LINE L2 3275 3313 0 490 28 14 0 chr1 95203722 95203794 -147460559 - L1PB2 LINE L1 -2 6149 6077 1220 98 6 6 chr1 95204761 95204935 -147459418 + L1PB2 LINE L1 5976 6149 -2 21 0 0 0 chr1 95206498 95206519 -147457834 + AT_rich Low_complexity Low_complexity 1 21 0 518 305 84 9 chr1 95206756 95206969 -147457384 + MIR SINE MIR 28 256 -6 341 267 95 71 chr1 95206993 95207203 -147457150 + L1ME LINE L1 2 216 -5854 1394 237 21 51 chr1 95207715 95207908 -147456445 + L1MC4a LINE L1 6441 6638 -1170 456 51 0 0 chr1 95207908 95207967 -147456386 + (CA)n Simple_repeat Simple_repeat 2 60 0 1394 237 21 51 chr1 95207967 95208204 -147456149 + L1MC4a LINE L1 6638 6858 -950 1494 219 52 14 chr1 95208209 95208575 -147455778 - MLT1E LTR MaLR 0 593 214 1153 233 47 20 chr1 95208621 95209029 -147455324 + L1M4 LINE L1 3660 4078 -2068 459 53 0 189 chr1 95211177 95211272 -147453081 - MADE1 DNA Mariner -3 77 1 387 281 10 0 chr1 95211409 95211505 -147452848 - MIR SINE MIR -94 168 72 200 280 56 75 chr1 95211739 95211846 -147452507 + MIR SINE MIR 39 143 -65 187 325 72 0 chr1 95212163 95212246 -147452107 + L2 LINE L2 3152 3240 -32 439 185 0 83 chr1 95213497 95213605 -147450748 - Tigger1 DNA MER2_type -2318 100 2 1709 217 68 14 chr1 95214442 95214885 -147449468 + MLT1C LTR MaLR 1 467 0 2046 126 0 54 chr1 95215609 95215926 -147448427 - AluSx SINE Alu -12 300 1 350 231 15 0 chr1 95216475 95216540 -147447813 - L2 LINE L2 -34 3279 3214 323 246 0 0 chr1 95216613 95216674 -147447679 + MER5B DNA MER1_type 2 62 -116 283 344 25 0 chr1 95216677 95216840 -147447513 + L1ME LINE L1 2 168 -5902 482 0 17 0 chr1 95216866 95216924 -147447429 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 335 333 8 107 chr1 95216927 95217161 -147447192 + L1ME LINE L1 328 538 -5532 295 271 46 110 chr1 95217196 95217477 -147446876 - L2 LINE L2 -584 2730 2468 351 242 12 4 chr1 95217493 95217647 -147446706 + MER20 DNA MER1_type 2 219 0 939 149 41 10 chr1 95217816 95218011 -147446342 - L1MC2 LINE L1 -8 6336 6136 305 241 21 128 chr1 95218115 95218302 -147446051 - MIR SINE MIR -17 245 79 244 214 0 43 chr1 95219613 95219683 -147444670 + CT-rich Low_complexity Low_complexity 4 70 0 1259 236 50 50 chr1 95219885 95220266 -147444087 + L2 LINE L2 2928 3308 -5 9024 134 63 50 chr1 95320307 95322133 -147342220 - HERVH LTR ERV1 -5863 1850 1 2608 83 134 2 chr1 95322135 95322531 -147341822 - LTR7 LTR ERV1 -2 448 1 399 284 94 16 chr1 95323229 95323356 -147340997 + MIR SINE MIR 68 204 -58 267 296 45 11 chr1 95323379 95323467 -147340886 + MIR SINE MIR 20 110 -152 294 257 28 22 chr1 95325476 95325581 -147338772 - MIR SINE MIR -37 171 62 248 213 88 25 chr1 95326338 95326418 -147337935 + LTR50 LTR ERVL 17 101 -694 864 336 61 10 chr1 95326595 95327006 -147337347 + ERVL LTR ERVL 4127 4558 -1206 878 189 0 13 chr1 95327136 95327289 -147337064 - Tigger3b DNA MER2_type 0 1231 1081 * 4669 145 48 22 chr1 95327282 95328151 -147336202 - Tigger3b DNA MER2_type -339 892 1 3787 274 45 26 chr1 95328154 95329662 -147334691 - ERVL LTR ERVL -429 5335 3767 2851 148 12 8 chr1 95329983 95330463 -147333890 + L1PA16 LINE L1 5685 6166 0 354 100 0 0 chr1 95330510 95330570 -147333783 + (GA)n Simple_repeat Simple_repeat 1 60 0 615 237 66 36 chr1 95330572 95330797 -147333556 + MLT1H1 LTR MaLR 299 570 -23 21 57 0 0 chr1 95331486 95331521 -147332832 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 95331552 95331589 -147332764 + AT_rich Low_complexity Low_complexity 1 37 0 303 241 52 12 chr1 95332086 95332205 -147332148 - L1ME LINE L1 -352 5817 5691 846 301 38 4 chr1 95333219 95333485 -147330868 - ERVL LTR ERVL -2315 3449 3175 384 245 66 19 chr1 95334209 95334315 -147330038 + L3 LINE CR1 1455 1565 -12 210 167 0 0 chr1 95334494 95334530 -147329823 + (TA)n Simple_repeat Simple_repeat 2 37 0 647 237 21 79 chr1 95335220 95335499 -147328854 - L1ME2 LINE L1 0 6959 6697 896 194 0 0 chr1 95335513 95335693 -147328660 + C-rich Low_complexity Low_complexity 1 180 0 227 350 0 0 chr1 95335693 95335753 -147328600 + polypyrimidine Low_complexity Low_complexity 1 60 0 264 122 0 0 chr1 95335854 95335895 -147328458 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 406 220 64 28 chr1 95335895 95336004 -147328349 - FLAM_A SINE Alu -29 113 1 2013 240 41 28 chr1 95336007 95336725 -147327628 - L1ME2 LINE L1 -256 6703 5979 1208 175 45 104 chr1 95336731 95337040 -147327313 + MLT2C1 LTR ERVL 2 292 -105 28 0 0 0 chr1 95337040 95337068 -147327285 + AT_rich Low_complexity Low_complexity 1 28 0 472 228 87 5 chr1 95337156 95337340 -147327013 - L1ME2 LINE L1 -1669 5272 5074 888 217 94 14 chr1 95337343 95337701 -147326652 - MLT1D LTR MaLR -7 498 22 297 109 0 0 chr1 95337701 95337756 -147326597 + (TG)n Simple_repeat Simple_repeat 2 56 0 888 217 94 14 chr1 95337756 95337780 -147326573 - MLT1D LTR MaLR -483 22 1 1361 268 90 52 chr1 95337894 95339575 -147324778 - L1ME2 LINE L1 -4027 3095 1129 21 0 0 0 chr1 95339819 95339840 -147324513 + AT_rich Low_complexity Low_complexity 1 21 0 279 253 63 58 chr1 95339985 95340175 -147324178 - L1ME2 LINE L1 -5967 456 266 261 0 0 0 chr1 95341713 95341742 -147322611 + (CA)n Simple_repeat Simple_repeat 2 30 0 2036 124 28 0 chr1 95342044 95342334 -147322019 - AluSx SINE Alu -14 298 1 7020 65 3 2 chr1 95342450 95343867 -147320486 + L1PA8 LINE L1 4751 6170 -2 266 333 75 4 chr1 95344259 95344422 -147319931 - MIR SINE MIR -69 139 18 1251 84 0 28 chr1 95345007 95345186 -147319167 - AluSg/x SINE Alu 0 312 139 561 290 31 65 chr1 95345420 95345713 -147318640 - L2 LINE L2 -6 3307 3025 1295 261 65 36 chr1 95345714 95346163 -147318190 - MLT1C LTR MaLR 0 467 6 532 308 99 5 chr1 95346168 95346511 -147317842 - L2 LINE L2 -285 3028 1883 212 316 79 26 chr1 95346725 95346801 -147317552 + L2 LINE L2 3193 3272 0 267 314 13 23 chr1 95348109 95348309 -147316044 + MLT2E LTR ERVL 411 607 -21 213 121 0 0 chr1 95348309 95348342 -147316011 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 191 356 0 0 chr1 95348977 95349064 -147315289 - L3 LINE CR1 -915 662 576 834 237 0 21 chr1 95351070 95351256 -147313097 + MER5A DNA MER1_type 1 182 -7 265 259 0 0 chr1 95351506 95351564 -147312789 + MLT2B3 LTR ERVL 1 58 -496 4758 66 2 0 chr1 95351980 95352583 -147311770 - L1PA7 LINE L1 0 6154 5551 1572 57 0 0 chr1 95352584 95352778 -147311575 + L1PA7 LINE L1 5367 5560 -594 497 291 25 41 chr1 95355139 95355335 -147309018 + MIR SINE MIR 45 237 -25 228 278 99 85 chr1 95356513 95356725 -147307628 + MIR SINE MIR 45 259 -3 270 399 24 18 chr1 95356734 95356902 -147307451 + L2 LINE L2 3102 3270 -2 429 208 17 17 chr1 95358741 95358861 -147305492 - Charlie5 DNA MER1_type -27 2585 2466 45 96 0 0 chr1 95358861 95358997 -147305356 + AT_rich Low_complexity Low_complexity 1 136 0 2180 218 47 31 chr1 95359005 95359538 -147304815 + MLT1F LTR MaLR 1 505 0 345 255 10 10 chr1 95359541 95359639 -147304714 + MLT1F-int LTR MaLR 5 102 -1269 761 281 58 4 chr1 95359699 95359973 -147304380 + MLT1F-int LTR MaLR 309 597 -774 2147 120 3 0 chr1 95360172 95360473 -147303880 - AluSp SINE Alu -11 302 1 438 356 11 11 chr1 95360513 95360701 -147303652 + MLT1F-int LTR MaLR 696 883 -488 518 261 34 139 chr1 95360890 95361242 -147303111 + MLT1F-int LTR MaLR 1023 1337 -34 1723 245 119 16 chr1 95361279 95361785 -147302568 + MLT1F1 LTR MaLR 10 567 0 615 208 45 27 chr1 95361785 95361938 -147302415 - MER33 DNA MER1_type -265 59 1 430 324 109 52 chr1 95361958 95362307 -147302046 + L2 LINE L2 2904 3272 0 199 310 0 0 chr1 95362308 95362366 -147301987 + L3 LINE CR1 1460 1517 -60 1609 181 6 19 chr1 95364235 95364550 -147299803 - AluJb SINE Alu -1 311 1 208 135 0 0 chr1 95364610 95364647 -147299706 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 945 183 31 13 chr1 95364647 95364876 -147299477 + L1MA7 LINE L1 6056 6288 -3 1387 181 65 18 chr1 95365804 95366081 -147298272 - AluJb SINE Alu -22 290 1 186 143 0 0 chr1 95366547 95366582 -147297771 + (CA)n Simple_repeat Simple_repeat 1 35 0 435 285 22 7 chr1 95367806 95367943 -147296410 - MER117 DNA MER1_type -58 139 1 381 329 118 63 chr1 95368487 95369239 -147295114 - L2 LINE L2 0 3313 2499 1442 214 28 3 chr1 95369240 95369529 -147294824 + AluJo SINE Alu 1 296 -16 22 35 0 0 chr1 95369536 95369565 -147294788 + AT_rich Low_complexity Low_complexity 1 29 0 287 148 0 33 chr1 95369798 95369859 -147294494 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 383 309 113 18 chr1 95370039 95370207 -147294146 - MIR SINE MIR -7 255 72 21 57 0 0 chr1 95370344 95370379 -147293974 + AT_rich Low_complexity Low_complexity 1 35 0 355 315 94 49 chr1 95370561 95370780 -147293573 - MIR SINE MIR -7 255 22 26 30 0 0 chr1 95371246 95371279 -147293074 + AT_rich Low_complexity Low_complexity 1 33 0 236 379 63 11 chr1 95371756 95371851 -147292502 - L2 LINE L2 -31 3241 3142 2053 138 24 6 chr1 95371872 95372213 -147292140 + MER47A DNA MER2_type 20 366 0 180 77 0 0 chr1 95372320 95372346 -147292007 + (GA)n Simple_repeat Simple_repeat 2 27 0 339 284 56 33 chr1 95372413 95372632 -147291721 - L1M4 LINE L1 -467 5697 5473 1437 204 49 57 chr1 95372859 95373058 -147291295 + MLT1A1 LTR MaLR 1 197 -168 2073 38 0 30 chr1 95373058 95373320 -147291033 - AluY SINE Alu -1 310 57 1437 204 49 57 chr1 95373320 95373488 -147290865 + MLT1A1 LTR MaLR 197 365 0 372 237 136 30 chr1 95373554 95373752 -147290601 - L1MEd LINE L1 -5303 816 598 401 240 30 0 chr1 95374748 95374848 -147289505 + L1MC5 LINE L1 6693 6795 -1166 320 22 0 43 chr1 95375974 95376020 -147288333 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 299 152 0 0 chr1 95377443 95377489 -147286864 + L2 LINE L2 3263 3308 -5 712 167 56 162 chr1 95378013 95378148 -147286205 + MER3 DNA MER1_type 1 102 -107 2243 106 16 47 chr1 95378148 95378534 -147285819 - THE1C LTR MaLR -1 374 1 712 167 56 162 chr1 95378534 95378632 -147285721 + MER3 DNA MER1_type 102 209 0 2708 6 0 31 chr1 95378637 95378957 -147285396 + AluYa5 SINE Alu 1 310 -1 328 341 55 36 chr1 95380116 95380336 -147284017 + MIR SINE MIR 3 226 -36 188 373 56 8 chr1 95380421 95380547 -147283806 - L2 LINE L2 -17 3296 3165 243 345 127 0 chr1 95380731 95380841 -147283512 - L2 LINE L2 0 3272 3149 660 214 0 0 chr1 95380967 95381093 -147283260 + FLAM_C SINE Alu 1 126 -7 297 306 202 0 chr1 95384093 95384217 -147280136 + MIR SINE MIR 53 201 -61 279 0 0 0 chr1 95384249 95384280 -147280073 + (CAT)n Simple_repeat Simple_repeat 3 33 0 216 0 0 0 chr1 95384561 95384585 -147279768 + (TG)n Simple_repeat Simple_repeat 1 24 0 695 221 47 52 chr1 95386420 95386592 -147277761 - MER20 DNA MER1_type -48 171 1 207 100 0 0 chr1 95386882 95386912 -147277441 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 869 255 129 9 chr1 95388704 95389022 -147275331 - L1ME3A LINE L1 -14 6225 5870 779 290 113 7 chr1 95389039 95389437 -147274916 - L1ME3A LINE L1 -447 5792 5354 933 280 49 76 chr1 95389463 95390606 -147273747 - L1ME3A LINE L1 -883 5332 2320 365 241 128 92 chr1 95390612 95390940 -147273413 - L1ME3A LINE L1 -4058 2338 1999 524 307 118 34 chr1 95391090 95391907 -147272446 - L1ME3A LINE L1 -4634 1762 878 524 15 15 0 chr1 95391981 95392046 -147272307 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 1629 192 6 3 chr1 95392359 95392682 -147271671 + L1MA4 LINE L1 5963 6286 -14 1445 246 47 29 chr1 95392835 95393082 -147271271 - Charlie4a DNA MER1_type -1455 506 265 1545 186 55 114 chr1 95393082 95393125 -147271228 - MLT2D LTR ERVL 0 414 370 222 37 0 0 chr1 95393125 95393152 -147271201 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 360 0 0 0 chr1 95393151 95393191 -147271162 + (GA)n Simple_repeat Simple_repeat 1 40 0 1545 186 55 114 chr1 95393152 95393482 -147270871 - MLT2D LTR ERVL -44 370 110 2115 111 0 7 chr1 95393482 95393789 -147270564 + AluSc SINE Alu 3 307 -2 1545 186 55 114 chr1 95393789 95393893 -147270460 - MLT2D LTR ERVL -304 110 1 1445 246 47 29 chr1 95393893 95394136 -147270217 - Charlie4a DNA MER1_type -1696 265 7 479 302 78 28 chr1 95394254 95394433 -147269920 - MIR SINE MIR -56 206 19 21 0 0 0 chr1 95394666 95394687 -147269666 + AT_rich Low_complexity Low_complexity 1 21 0 2133 126 0 0 chr1 95394698 95394999 -147269354 - AluSg SINE Alu -9 301 1 24 32 0 0 chr1 95395516 95395547 -147268806 + AT_rich Low_complexity Low_complexity 1 31 0 723 289 60 15 chr1 95395598 95395864 -147268489 - MLT1E2 LTR MaLR -146 480 203 375 177 0 0 chr1 95395987 95396049 -147268304 + L2 LINE L2 3211 3272 0 313 356 15 0 chr1 95396570 95396702 -147267651 - MER69A DNA AcHobo -43 134 1 272 89 0 22 chr1 95398377 95398422 -147265931 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1735 159 47 7 chr1 95398600 95398896 -147265457 + AluJo SINE Alu 1 308 -4 1851 161 31 52 chr1 95399056 95399440 -147264913 - L1PB4 LINE L1 -13 6143 5768 6904 52 14 9 chr1 95400891 95401847 -147262506 + L1PA7 LINE L1 5190 6149 -5 348 315 46 81 chr1 95403278 95403475 -147260878 + MIR3 SINE MIR 14 203 -5 244 268 56 63 chr1 95404163 95404305 -147260048 + MER5B DNA MER1_type 2 142 -36 242 254 0 17 chr1 95404723 95404782 -147259571 + MIR SINE MIR 83 140 -68 261 269 67 52 chr1 95404840 95404974 -147259379 - MIR SINE MIR -3 259 124 4392 275 116 25 chr1 95404997 95406396 -147257957 + HAL1 LINE L1 17 1288 -1219 2950 89 16 23 chr1 95406396 95406835 -147257518 - L1PA11 LINE L1 -2 6172 5737 4392 275 116 25 chr1 95406835 95407141 -147257212 + HAL1 LINE L1 1288 1565 -942 1687 112 16 8 chr1 95407141 95407392 -147256961 + AluSq SINE Alu 32 284 -29 315 0 0 0 chr1 95407392 95407427 -147256926 + (CA)n Simple_repeat Simple_repeat 2 36 0 4392 275 116 25 chr1 95407427 95407981 -147256372 + HAL1 LINE L1 1564 2507 0 21 0 0 0 chr1 95408056 95408077 -147256276 + AT_rich Low_complexity Low_complexity 1 21 0 236 237 53 142 chr1 95409185 95409354 -147254999 - L2 LINE L2 -7 3306 3153 808 334 107 49 chr1 95409565 95410229 -147254124 - L2 LINE L2 -429 2885 2130 1687 184 0 0 chr1 95410229 95410507 -147253846 + AluJo SINE Alu 19 296 -16 808 334 107 49 chr1 95410507 95410958 -147253395 - L2 LINE L2 -1184 2130 1706 376 188 14 0 chr1 95410958 95411096 -147253257 + (TA)n Simple_repeat Simple_repeat 2 141 0 183 375 16 0 chr1 95411393 95411457 -147252896 - L2 LINE L2 -36 3236 3172 1502 250 25 83 chr1 95411486 95411618 -147252735 + MLT2B1 LTR ERVL 1 139 -381 1794 168 24 42 chr1 95411618 95411999 -147252354 - THE1C LTR MaLR 0 375 2 1502 250 25 83 chr1 95411999 95412372 -147251981 + MLT2B1 LTR ERVL 139 532 12 630 11 35 0 chr1 95412372 95412459 -147251894 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 192 40 0 0 chr1 95412465 95412490 -147251863 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 1502 250 25 83 chr1 95412490 95412528 -147251825 + MLT2B1 LTR ERVL 481 520 0 227 359 130 0 chr1 95412591 95412722 -147251631 - L2 LINE L2 -195 3077 2930 1253 203 42 67 chr1 95413119 95413478 -147250875 - MLT1B LTR MaLR -36 354 5 2754 267 83 38 chr1 95413487 95414261 -147250092 - MLT1B-int LTR MaLR -6 1365 531 398 19 0 19 chr1 95414261 95414313 -147250040 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2754 267 83 38 chr1 95414313 95414579 -147249774 - MLT1B-int LTR MaLR -840 531 278 489 138 11 11 chr1 95414570 95414657 -147249696 - MLT1B-int LTR MaLR -1283 88 2 * 2264 189 19 15 chr1 95414660 95415125 -147249228 + ERVL LTR ERVL 3592 4058 -1706 9367 174 32 11 chr1 95415235 95416928 -147247425 + ERVL LTR ERVL 4037 5764 0 841 184 29 6 chr1 95416928 95416990 -147247363 + Ricksha DNA DNA 351 416 -1630 847 199 143 42 chr1 95417023 95417239 -147247114 + MLT2B1 LTR ERVL 283 520 0 538 133 12 0 chr1 95418355 95418438 -147245915 - MLT1A2 LTR MaLR -290 84 1 25 0 0 0 chr1 95418956 95418981 -147245372 + AT_rich Low_complexity Low_complexity 1 25 0 401 314 77 0 chr1 95420379 95420535 -147243818 - MIR SINE MIR -94 168 1 1110 216 176 13 chr1 95420943 95421336 -147243017 - Charlie1b DNA MER1_type -1 522 66 260 346 59 26 chr1 95421701 95421854 -147242499 - MIR SINE MIR -58 204 47 256 205 154 0 chr1 95421889 95421967 -147242386 + LTR37B LTR ERV1 3 92 -376 302 274 59 0 chr1 95422065 95422167 -147242186 + LTR37A LTR ERV1 111 218 -208 379 225 12 0 chr1 95422230 95422310 -147242043 + MER58 DNA MER1_type 134 2419 -1 1502 108 0 0 chr1 95422633 95422828 -147241525 + AluSx SINE Alu 1 195 -117 1997 191 31 8 chr1 95424081 95424468 -147239885 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr1 95424826 95424855 -147239498 + AT_rich Low_complexity Low_complexity 1 29 0 210 71 0 0 chr1 95425732 95425760 -147238593 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1855 165 52 0 chr1 95426075 95426403 -147237950 + MER7A DNA MER2_type 4 346 0 185 219 98 130 chr1 95427004 95427127 -147237226 - L3 LINE CR1 -869 708 590 281 340 19 10 chr1 95427650 95427753 -147236600 + MIR SINE MIR 20 123 -139 703 200 0 0 chr1 95427802 95427922 -147236431 + AluJb SINE Alu 1 120 -192 723 292 15 0 chr1 95428435 95428630 -147235723 - MIR SINE MIR -1 261 64 385 274 30 7 chr1 95428901 95429036 -147235317 - L1ME4a LINE L1 -3 6118 5981 488 173 0 8 chr1 95429220 95429347 -147235006 + (TA)n Simple_repeat Simple_repeat 2 127 0 25 0 0 0 chr1 95429798 95429823 -147234530 + AT_rich Low_complexity Low_complexity 1 25 0 317 346 0 19 chr1 95429893 95430052 -147234301 - L1ME4a LINE L1 -418 5703 5548 255 337 11 11 chr1 95430840 95430932 -147233421 - MIR SINE MIR -149 113 22 1828 223 3 0 chr1 95431057 95431421 -147232932 - MLT1A1 LTR MaLR 0 365 1 836 274 69 0 chr1 95431481 95431726 -147232627 + MIR SINE MIR 1 262 0 536 284 28 70 chr1 95433113 95433426 -147230927 - L2 LINE L2 -250 3063 2767 900 217 77 4 chr1 95433488 95433723 -147230630 - L1MC3 LINE L1 0 7785 7534 4365 186 30 20 chr1 95433741 95434571 -147229782 - MER21B LTR ERV1 -21 842 5 344 221 53 0 chr1 95434575 95434670 -147229683 - L1MC3 LINE L1 -249 7536 7437 1061 189 66 89 chr1 95434782 95434905 -147229448 - L1MC3 LINE L1 -794 6991 6867 243 0 0 0 chr1 95434905 95434932 -147229421 + (TG)n Simple_repeat Simple_repeat 2 28 0 1061 189 66 89 chr1 95434932 95435158 -147229195 - L1MC3 LINE L1 -918 6867 6650 368 261 176 0 chr1 95435167 95435286 -147229067 - L2 LINE L2 -597 2717 2578 21 36 0 0 chr1 95436178 95436206 -147228147 + AT_rich Low_complexity Low_complexity 1 28 0 228 375 27 44 chr1 95436665 95436848 -147227505 - MIR SINE MIR -55 207 29 269 209 64 81 chr1 95436895 95437004 -147227349 + MIR SINE MIR 94 196 -63 1549 207 28 23 chr1 95437430 95437782 -147226571 - MLT1A1 LTR MaLR 0 365 12 21 0 0 0 chr1 95438533 95438554 -147225799 + AT_rich Low_complexity Low_complexity 1 21 0 286 247 0 54 chr1 95439074 95439167 -147225186 - MIR SINE MIR -38 224 137 465 343 88 32 chr1 95439654 95439937 -147224416 - L2 LINE L2 -4 3309 3011 397 309 62 28 chr1 95440010 95440188 -147224165 - MIR3 SINE MIR -2 206 23 277 222 28 0 chr1 95442917 95442989 -147221364 - MIR SINE MIR -45 217 144 297 306 97 14 chr1 95443065 95443209 -147221144 - MIR SINE MIR -105 157 2 548 216 115 11 chr1 95443280 95443459 -147220894 + MLT2E LTR ERVL 1 193 -435 459 286 80 49 chr1 95443464 95443688 -147220665 - L2 LINE L2 -396 2918 2688 678 287 120 38 chr1 95443688 95443848 -147220505 - L2 LINE L2 -1019 2295 2150 1724 190 3 3 chr1 95443848 95444143 -147220210 - AluJb SINE Alu -17 295 1 678 287 120 38 chr1 95444143 95444323 -147220030 - L2 LINE L2 -1164 2150 1927 231 119 0 0 chr1 95444875 95444917 -147219436 + LTR66 LTR ERVL 398 439 -171 232 75 50 0 chr1 95444917 95444957 -147219396 - L1MC4 LINE L1 -1339 6703 6662 24 0 0 0 chr1 95445005 95445029 -147219324 + AT_rich Low_complexity Low_complexity 1 24 0 1238 282 88 3 chr1 95445453 95445840 -147218513 + LTR16A LTR ERVL 16 435 -15 200 359 0 0 chr1 95445922 95445986 -147218367 + MIR SINE MIR 35 98 -110 1176 200 9 4 chr1 95546120 95546350 -147118003 - MIR SINE MIR 0 262 32 414 298 86 0 chr1 95546378 95546576 -147117777 - L2 LINE L2 -1193 2121 1907 508 249 139 6 chr1 95548644 95548809 -147115544 + MIR SINE MIR 20 206 -56 315 127 0 0 chr1 95551760 95551815 -147112538 + AluSc SINE Alu 245 299 0 225 0 0 0 chr1 95552649 95552674 -147111679 + (A)n Simple_repeat Simple_repeat 1 25 0 331 289 141 14 chr1 95552683 95552825 -147111528 - L2 LINE L2 -535 2779 2620 2090 104 0 4 chr1 95552837 95553163 -147111190 + AluSx SINE Alu 5 329 0 237 294 42 76 chr1 95553216 95553478 -147110875 + L2 LINE L2 2708 2960 -354 2141 118 3 7 chr1 95554718 95555015 -147109338 + AluSx SINE Alu 1 296 -16 658 279 81 0 chr1 95555061 95555283 -147109070 - MIR SINE MIR -10 252 13 186 262 65 84 chr1 95555443 95555550 -147108803 - L2 LINE L2 -8 3264 3160 304 290 32 21 chr1 95556785 95556878 -147107475 + L2 LINE L2 3212 3305 -8 2163 116 0 0 chr1 95557133 95557427 -147106926 - AluSx SINE Alu -18 294 1 21 0 0 0 chr1 95557496 95557517 -147106836 + AT_rich Low_complexity Low_complexity 1 21 0 207 344 25 25 chr1 95558046 95558168 -147106185 + L2 LINE L2 3179 3300 -13 965 191 23 12 chr1 95558211 95558384 -147105969 + MER5B DNA MER1_type 1 175 -3 390 306 41 0 chr1 95558698 95558796 -147105557 - L2 LINE L2 -2 3270 3169 207 290 75 58 chr1 95559554 95559723 -147104630 + MIR SINE MIR 21 220 -42 256 344 11 0 chr1 95560083 95560173 -147104180 + MIR SINE MIR 53 143 -119 342 306 31 117 chr1 95560440 95560800 -147103553 + L2 LINE L2 2897 3225 -47 2270 92 3 10 chr1 95561041 95561344 -147103009 + AluSp SINE Alu 13 313 0 202 119 0 48 chr1 95561556 95561598 -147102755 - MIR SINE MIR -64 198 159 243 216 20 0 chr1 95561599 95561650 -147102703 + MER63 DNA MER1_type 1 52 -384 723 183 34 17 chr1 95562121 95562296 -147102057 + MER63 DNA MER1_type 849 1026 -35 262 291 74 61 chr1 95562300 95562448 -147101905 - MIR SINE MIR -98 164 15 848 159 0 0 chr1 95562890 95563016 -147101337 + AluJb SINE Alu 141 266 -46 1145 94 7 0 chr1 95563018 95563167 -147101186 + L1PA10 LINE L1 6007 6156 -12 251 363 41 7 chr1 95564149 95564295 -147100058 - MIR3 SINE MIR -5 203 53 23 33 0 0 chr1 95564895 95564925 -147099428 + AT_rich Low_complexity Low_complexity 1 30 0 185 286 143 0 chr1 95565291 95565354 -147098999 + MIR3 SINE MIR 116 187 -21 2159 115 0 0 chr1 95565742 95566068 -147098285 + AluSq SINE Alu 1 326 0 903 280 50 22 chr1 95566349 95566757 -147097596 + L1MC4a LINE L1 5513 6052 -1756 181 363 27 27 chr1 95567049 95567195 -147097158 + L2 LINE L2 2252 2397 -917 190 349 151 6 chr1 95567402 95567574 -147096779 + L2 LINE L2 2554 2750 -564 495 194 10 0 chr1 95568260 95568358 -147095995 + L1ME2 LINE L1 6064 6162 -2 359 137 14 0 chr1 95569048 95569121 -147095232 + (TG)n Simple_repeat Simple_repeat 1 74 0 417 311 168 0 chr1 95569428 95569637 -147094716 + MIR SINE MIR 1 244 -18 182 256 26 0 chr1 95571385 95571424 -147092929 + MER5A DNA MER1_type 107 146 -43 258 273 0 15 chr1 95572971 95573037 -147091316 - MIR SINE MIR -110 152 88 237 336 105 58 chr1 95573474 95573751 -147090602 + L2 LINE L2 2935 3224 -48 202 274 206 0 chr1 95574308 95574381 -147089972 + MER91A DNA MER1_type 10 97 -99 264 238 60 48 chr1 95576001 95576085 -147088268 + MIR3 SINE MIR 73 157 -51 206 269 90 0 chr1 95576908 95576975 -147087378 - MER5A DNA MER1_type -77 112 40 230 62 0 0 chr1 95577834 95577866 -147086487 + L1MB8 LINE L1 6146 6177 -1 472 277 82 80 chr1 95577878 95578530 -147085823 - L2 LINE L2 -31 3282 2575 2884 7 0 0 chr1 95579148 95579457 -147084896 + AluYa5 SINE Alu 1 309 -2 2531 112 59 6 chr1 95579538 95579877 -147084476 + LTR18A LTR ERVL 1 357 0 5295 194 9 33 chr1 95579891 95580327 -147084026 + HERVL18 LTR ERVL 9 454 -5593 2008 134 7 0 chr1 95580327 95580619 -147083734 + AluSx SINE Alu 1 294 -18 5295 194 9 33 chr1 95580619 95581174 -147083179 + HERVL18 LTR ERVL 454 976 -5071 2487 94 94 11 chr1 95581234 95581607 -147082746 - MLT2A1 LTR ERVL -40 404 1 16176 161 10 4 chr1 95581607 95586551 -147077802 + HERVL18 LTR ERVL 971 6047 0 2191 112 140 3 chr1 95586552 95586866 -147077487 + LTR18A LTR ERVL 1 357 0 1904 161 0 7 chr1 95586867 95587171 -147077182 - AluJb SINE Alu -4 308 7 2402 87 0 0 chr1 95587941 95588240 -147076113 - AluSq SINE Alu -14 299 1 724 227 0 0 chr1 95588798 95588939 -147075414 + MIR SINE MIR 13 153 -109 408 287 63 13 chr1 95589378 95589565 -147074788 + MLT1L LTR MaLR 321 597 -2 192 360 40 0 chr1 95590662 95590762 -147073591 - MIR SINE MIR -3 259 156 752 205 137 44 chr1 95592202 95592407 -147071946 + MLT1A2 LTR MaLR 151 374 0 994 210 95 11 chr1 95592516 95593473 -147070880 + L1ME3 LINE L1 4724 5806 -358 2541 138 24 21 chr1 95593479 95593899 -147070454 - MSTB LTR MaLR -5 421 1 233 129 0 129 chr1 95593899 95593969 -147070384 + L1ME3 LINE L1 5798 5858 -308 287 135 0 0 chr1 95593972 95594024 -147070329 + L1ME2 LINE L1 5810 5861 -303 226 156 0 0 chr1 95594076 95594121 -147070232 - LTR66 LTR ERVL -172 438 394 548 203 48 47 chr1 95594121 95594294 -147070059 + L1ME2 LINE L1 5862 6036 -128 275 284 9 61 chr1 95594269 95594469 -147069884 + L1ME3 LINE L1 5977 6161 -1 * 267 323 10 8 chr1 95594687 95594826 -147069527 + ERVL LTR ERVL 481 617 -5037 630 166 22 14 chr1 95595029 95595168 -147069185 - MER33 DNA MER1_type -9 315 176 295 79 0 0 chr1 95595173 95595211 -147069142 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 * 660 179 142 12 chr1 95595206 95595368 -147068985 - MER33 DNA MER1_type -130 194 12 647 177 136 41 chr1 95595381 95595528 -147068825 - MER20 DNA MER1_type 0 219 59 708 295 109 64 chr1 95595726 95595884 -147068469 + ERVL LTR ERVL 1100 1249 -4405 1606 154 17 27 chr1 95595884 95596177 -147068176 + L1MA4 LINE L1 6000 6289 -11 708 295 109 64 chr1 95596177 95596627 -147067726 + ERVL LTR ERVL 1249 1702 -3952 904 264 45 5 chr1 95596656 95596876 -147067477 + ERVL LTR ERVL 2199 2427 -3337 478 191 29 81 chr1 95597070 95597175 -147067178 + MER58B DNA MER1_type 210 308 -2112 1793 122 38 139 chr1 95597175 95597592 -147066761 - THE1C LTR MaLR 0 375 1 478 191 29 81 chr1 95597592 95597622 -147066731 + MER58B DNA MER1_type 308 338 -3 257 244 49 12 chr1 95597897 95597979 -147066374 - MIR3 SINE MIR -15 193 109 345 225 72 33 chr1 95599178 95599324 -147065029 + MIR SINE MIR 33 139 -69 2565 48 0 10 chr1 95599544 95599858 -147064495 + AluY SINE Alu 1 311 0 1563 62 16 0 chr1 95600262 95600456 -147063897 - AluSc SINE Alu -16 293 97 243 345 12 0 chr1 95600470 95600554 -147063799 + MIR SINE MIR 53 137 -125 250 208 0 0 chr1 95600765 95600813 -147063540 - MER94 DNA DNA -86 48 1 25 51 0 0 chr1 95601792 95601831 -147062522 + AT_rich Low_complexity Low_complexity 1 39 0 10547 172 36 18 chr1 95601867 95603576 -147060777 - L1PB1 LINE L1 -1 6150 4473 192 77 0 0 chr1 95603576 95603602 -147060751 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 10547 172 36 18 chr1 95603602 95604256 -147060097 - L1PB1 LINE L1 -1678 4473 3832 2267 89 3 0 chr1 95604256 95604547 -147059806 - AluSg1 SINE Alu -17 292 1 10547 172 36 18 chr1 95604547 95605393 -147058960 - L1PB1 LINE L1 -2319 3832 2894 26 0 0 0 chr1 95607895 95607921 -147056432 + AT_rich Low_complexity Low_complexity 1 26 0 2076 127 0 37 chr1 95608000 95608324 -147056029 + AluSx SINE Alu 1 312 0 696 242 119 0 chr1 95608738 95608998 -147055355 - HsTC2 DNA Tc2 -18 1880 1590 839 159 18 6 chr1 95610324 95610487 -147053866 - L1MB8 LINE L1 -5 6173 6009 334 252 82 6 chr1 95610692 95610851 -147053502 - L1ME4a LINE L1 -124 5997 5827 255 316 29 7 chr1 95611039 95611178 -147053175 - L1ME4a LINE L1 -280 5841 5700 22 35 0 0 chr1 95612728 95612757 -147051596 + AT_rich Low_complexity Low_complexity 1 29 0 263 257 0 0 chr1 95612761 95612831 -147051522 - L1ME4a LINE L1 -113 6008 5939 26 0 0 0 chr1 95614035 95614061 -147050292 + AT_rich Low_complexity Low_complexity 1 26 0 2685 135 14 5 chr1 95615410 95615832 -147048521 - MSTA LTR MaLR 0 428 3 2112 122 44 22 chr1 95615833 95616193 -147048160 + THE1C LTR MaLR 8 375 0 9901 123 16 31 chr1 95616193 95617797 -147046556 + THE1C-int LTR MaLR 1 1580 0 2255 146 5 8 chr1 95617797 95618173 -147046180 + THE1C LTR MaLR 1 375 0 330 242 56 31 chr1 95618717 95618878 -147045475 - MER103 DNA DNA -1 165 1 35 41 0 0 chr1 95619098 95619147 -147045206 + AT_rich Low_complexity Low_complexity 1 49 0 456 246 57 8 chr1 95619262 95619384 -147044969 + MIR SINE MIR 74 201 -61 448 304 67 97 chr1 95619389 95619790 -147044563 + L2 LINE L2 2881 3269 -44 186 305 29 109 chr1 95619872 95620082 -147044271 - L2 LINE L2 -1335 1979 1787 229 284 176 0 chr1 95620086 95620160 -147044193 + MER20B DNA MER1_type 97 183 -600 22 80 0 0 chr1 95620368 95620418 -147043935 + AT_rich Low_complexity Low_complexity 1 50 0 212 292 0 0 chr1 95620498 95620546 -147043807 + L2 LINE L2 3266 3313 0 455 204 19 29 chr1 95620721 95620824 -147043529 - L2 LINE L2 -18 3295 3194 299 178 0 0 chr1 95621063 95621117 -147043236 + FLAM SINE Alu 76 119 -14 321 151 17 34 chr1 95621120 95621239 -147043114 + (TA)n Simple_repeat Simple_repeat 2 118 0 616 180 0 31 chr1 95621244 95621372 -147042981 + FRAM SINE Alu 4 127 -49 2935 113 29 0 chr1 95621558 95622008 -147042345 - L1PB2 LINE L1 0 6151 5689 22 0 0 0 chr1 95622418 95622440 -147041913 + AT_rich Low_complexity Low_complexity 1 22 0 2277 91 0 10 chr1 95622479 95622777 -147041576 - AluSc SINE Alu -14 295 1 23 33 0 0 chr1 95622998 95623028 -147041325 + AT_rich Low_complexity Low_complexity 1 30 0 639 233 133 60 chr1 95625851 95626182 -147038171 - L1ME LINE L1 -359 5762 5408 227 54 27 0 chr1 95627090 95627127 -147037226 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 1624 266 113 48 chr1 95627181 95627933 -147036420 - HAL1 LINE L1 -601 1906 1106 1446 138 115 26 chr1 95628066 95628214 -147036139 - AluJo SINE Alu -19 293 160 576 65 0 0 chr1 95628214 95628291 -147036062 + (TG)n Simple_repeat Simple_repeat 2 78 0 1446 138 115 26 chr1 95628291 95628411 -147035942 - AluJo SINE Alu -152 160 1 24 0 0 0 chr1 95628426 95628450 -147035903 + AT_rich Low_complexity Low_complexity 1 24 0 287 263 88 12 chr1 95629282 95629362 -147034991 + L2 LINE L2 3169 3254 -18 539 285 67 16 chr1 95629382 95629575 -147034778 - MIR SINE MIR -2 260 58 734 285 105 68 chr1 95629753 95630163 -147034190 - MLT1J LTR MaLR -1 510 86 211 363 73 0 chr1 95630197 95630321 -147034032 + L2 LINE L2 2918 3050 -222 231 214 36 18 chr1 95630367 95630423 -147033930 + L2 LINE L2 3254 3310 -3 28 29 0 0 chr1 95630983 95631018 -147033335 + AT_rich Low_complexity Low_complexity 1 35 0 1459 258 167 2 chr1 95631269 95631718 -147032635 + L2 LINE L2 2183 2705 -609 2007 118 20 3 chr1 95631726 95632023 -147032330 + AluSx SINE Alu 1 302 -10 1300 218 39 7 chr1 95632094 95632374 -147031979 + AluJb SINE Alu 3 291 -21 26 50 0 0 chr1 95632374 95632414 -147031939 + AT_rich Low_complexity Low_complexity 1 40 0 415 263 174 52 chr1 95632414 95632842 -147031511 + L2 LINE L2 2710 3220 -52 21 89 0 0 chr1 95632949 95633005 -147031348 + AT_rich Low_complexity Low_complexity 1 56 0 1728 252 41 2 chr1 95633159 95633575 -147030778 + LTR40b LTR ERVL 26 457 -5 22 0 0 0 chr1 95634024 95634046 -147030307 + AT_rich Low_complexity Low_complexity 1 22 0 2060 130 20 3 chr1 95634865 95635166 -147029187 + AluSx SINE Alu 1 306 -6 28 0 0 0 chr1 95635912 95635940 -147028413 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 95636399 95636420 -147027933 + AT_rich Low_complexity Low_complexity 1 21 0 292 326 61 7 chr1 95637054 95637201 -147027152 + L2 LINE L2 3158 3312 -1 327 317 39 0 chr1 95638668 95638772 -147025581 + L2 LINE L2 3205 3312 -1 1708 107 27 4 chr1 95638889 95639152 -147025201 + L1PA13 LINE L1 5893 6161 -2 230 356 76 8 chr1 95640555 95640673 -147023680 - L2 LINE L2 -3 3269 3144 7261 78 17 3 chr1 95642816 95644578 -147019775 + L1PA7 LINE L1 4379 6154 0 42 65 0 0 chr1 95646287 95646364 -147017989 + AT_rich Low_complexity Low_complexity 1 77 0 202 304 22 0 chr1 95647337 95647383 -147016970 + L2 LINE L2 3140 3186 -86 459 151 157 32 chr1 95647625 95647797 -147016556 - MIR SINE MIR -13 249 7 1270 138 192 24 chr1 95649167 95649464 -147014889 + MSTA LTR MaLR 1 347 -81 5872 90 9 23 chr1 95649464 95650159 -147014194 + L1PB1 LINE L1 5277 5959 -192 2732 10 0 0 chr1 95650159 95650461 -147013892 + AluY SINE Alu 1 302 -9 5872 90 9 23 chr1 95650461 95650645 -147013708 + L1PB1 LINE L1 5959 6144 -7 180 252 68 19 chr1 95650994 95651097 -147013256 - MER5C DNA MER1_type -41 283 176 15538 105 21 10 chr1 95651097 95654908 -147009445 - HERVH48 LTR ERV1 -2731 3923 1 2203 111 47 64 chr1 95654908 95655313 -147009040 - MER48 LTR ERV1 0 398 1 978 244 48 16 chr1 95655358 95655674 -147008679 + L1M4 LINE L1 3532 3857 -2289 2510 240 85 40 chr1 95655687 95656807 -147007546 + L1M4 LINE L1 3927 5096 -1050 35 0 0 0 chr1 95656832 95656867 -147007486 + AT_rich Low_complexity Low_complexity 1 35 0 219 88 0 0 chr1 95657008 95657042 -147007311 + (TA)n Simple_repeat Simple_repeat 2 35 0 686 250 122 21 chr1 95659300 95659588 -147004765 - L1MC5 LINE L1 -386 7575 7259 31142 48 4 3 chr1 95659706 95664437 -146999916 - L1PA5 LINE L1 -4 6150 1413 1211 124 26 0 chr1 95664437 95664630 -146999723 + L1PA5 LINE L1 1246 1443 -4703 696 211 111 14 chr1 95664629 95664878 -146999475 - L1MC4 LINE L1 -728 7233 6979 * 24 0 0 0 chr1 95664973 95664997 -146999356 + AT_rich Low_complexity Low_complexity 1 24 0 1880 160 24 18 chr1 95665169 95665417 -146998936 + MER44D DNA MER2_type 1 246 -2245 2175 157 61 10 chr1 95665417 95665824 -146998529 + MSTA LTR MaLR 1 428 0 1880 160 24 18 chr1 95665824 95665912 -146998441 + MER44D DNA MER2_type 246 609 0 929 120 23 17 chr1 95666282 95666457 -146997896 + L1MA5A LINE L1 6103 6278 -19 26 30 0 0 chr1 95666495 95666528 -146997825 + AT_rich Low_complexity Low_complexity 1 33 0 260 306 72 31 chr1 95666700 95666893 -146997460 - HAL1b LINE L1 -816 532 332 28 61 0 0 chr1 95668296 95668345 -146996008 + AT_rich Low_complexity Low_complexity 1 49 0 232 235 88 0 chr1 95669716 95669784 -146994569 - L2 LINE L2 0 3272 3199 275 258 45 0 chr1 95669944 95670010 -146994343 + MLT1J LTR MaLR 110 178 -333 1295 235 221 7 chr1 95670293 95670736 -146993617 + MLT1F LTR MaLR 1 538 -4 724 293 81 100 chr1 95670991 95672010 -146992343 - L2 LINE L2 -85 3228 2222 257 205 0 51 chr1 95672250 95672328 -146992025 - Charlie4 DNA MER1_type -643 1318 1245 1117 205 36 53 chr1 95672942 95673163 -146991190 - Charlie4 DNA MER1_type -1664 297 81 2341 96 0 0 chr1 95673163 95673465 -146990888 + AluSx SINE Alu 1 302 -10 1117 205 36 53 chr1 95673465 95673545 -146990808 - Charlie4 DNA MER1_type -1880 81 1 445 338 75 14 chr1 95674522 95674735 -146989618 - MIR SINE MIR -12 250 25 311 273 82 21 chr1 95674980 95675174 -146989179 - LTR33A LTR ERVL -51 472 267 21 36 0 0 chr1 95676129 95676157 -146988196 + AT_rich Low_complexity Low_complexity 1 28 0 271 233 42 138 chr1 95676419 95676608 -146987745 + LTR37A LTR ERV1 14 184 -242 665 159 7 7 chr1 95676628 95676766 -146987587 + LTR37A LTR ERV1 289 426 0 440 248 109 36 chr1 95676775 95676937 -146987416 - MIR SINE MIR -61 147 22 274 275 31 11 chr1 95677033 95677170 -146987183 - MIR SINE MIR 0 262 78 241 200 0 55 chr1 95677203 95677258 -146987095 + MER5B DNA MER1_type 4 55 -123 239 191 0 21 chr1 95677262 95677309 -146987044 - MER5B DNA MER1_type -113 65 20 547 279 61 25 chr1 95677979 95678205 -146986148 + MLT1L LTR MaLR 286 615 0 1523 188 10 23 chr1 95678915 95679218 -146985135 - AluJo SINE Alu -13 299 1 2197 174 28 0 chr1 95679688 95680080 -146984273 - MER57A LTR ERV1 0 403 1 616 206 20 20 chr1 95680214 95680360 -146983993 - LTR54B LTR ERV1 -352 146 1 6830 188 13 19 chr1 95680364 95681663 -146982690 - LTR23-int LTR ERV1 -420 7117 5826 5488 167 61 63 chr1 95682003 95683373 -146980980 - LTR23-int LTR ERV1 -1732 5805 4440 280 163 0 0 chr1 95683386 95683429 -146980924 - MER4D LTR ERV1 -73 830 788 477 199 54 103 chr1 95683429 95683727 -146980626 - LTR23-int LTR ERV1 -2286 3977 2357 676 217 116 35 chr1 95683730 95684198 -146980155 - LTR23-int LTR ERV1 -2817 2119 1734 583 209 37 15 chr1 95684208 95684342 -146980011 + MIR SINE MIR 99 235 -27 189 244 0 0 chr1 95684647 95684692 -146979661 + L2 LINE L2 1966 2010 -1304 314 301 97 10 chr1 95685631 95685734 -146978619 - MIR SINE MIR -131 131 20 253 372 34 0 chr1 95686041 95686189 -146978164 - LTR67 LTR ERVL -2 555 403 1663 284 176 57 chr1 95686325 95686419 -146977934 + MER45C DNA AcHobo 2 83 -1498 2587 64 0 0 chr1 95686419 95686730 -146977623 - AluY SINE Alu 0 311 1 1663 284 176 57 chr1 95686730 95687483 -146976870 + MER45C DNA AcHobo 83 950 -3 351 304 33 0 chr1 95687509 95687601 -146976752 - LTR67 LTR ERVL -364 193 99 277 224 75 37 chr1 95687707 95687814 -146976539 + L2 LINE L2 3199 3309 -4 768 212 13 20 chr1 95689017 95689168 -146975185 - MLT1D LTR MaLR -353 152 3 1608 180 29 14 chr1 95689352 95689630 -146974723 - AluJo SINE Alu -30 282 1 23 0 0 0 chr1 95691718 95691741 -146972612 + AT_rich Low_complexity Low_complexity 1 23 0 234 287 60 48 chr1 95691920 95692087 -146972266 + L1MB7 LINE L1 3788 3956 -2190 14619 152 56 9 chr1 95692446 95692572 -146971781 + L1MA1 LINE L1 3529 3648 -4073 180 0 0 0 chr1 95692572 95692592 -146971761 + (CA)n Simple_repeat Simple_repeat 2 21 0 14619 152 56 9 chr1 95692592 95696463 -146967890 + L1MA1 LINE L1 3648 7721 0 251 264 0 0 chr1 95696485 95696538 -146967815 + GA-rich Low_complexity Low_complexity 1 53 0 5325 51 8 3 chr1 95696566 95697234 -146967119 + L1PA8 LINE L1 5498 6168 -4 4365 161 90 7 chr1 95697536 95698349 -146966004 - MER49 LTR ERV1 -43 880 1 602 330 38 17 chr1 95698796 95699032 -146965321 - MIR SINE MIR -11 251 11 26 0 0 0 chr1 95699224 95699250 -146965103 + AT_rich Low_complexity Low_complexity 1 26 0 617 151 0 0 chr1 95699317 95699410 -146964943 + AluJb SINE Alu 205 297 -15 2119 129 0 3 chr1 95699707 95700017 -146964336 + AluSg SINE Alu 1 309 -1 4459 257 70 39 chr1 95700135 95701788 -146962565 + L1MEc LINE L1 37 1741 -4655 3359 224 148 45 chr1 95701919 95702306 -146962047 + L1MB7 LINE L1 4058 4403 -1781 2008 164 0 0 chr1 95702306 95702604 -146961749 + AluSx SINE Alu 1 298 -14 3359 224 148 45 chr1 95702604 95703396 -146960957 + L1MB7 LINE L1 4403 5111 -1073 2250 134 103 0 chr1 95703396 95703784 -146960569 - MSTA LTR MaLR 0 428 1 3359 224 148 45 chr1 95703784 95704508 -146959845 + L1MB7 LINE L1 5111 6184 0 278 359 16 0 chr1 95705878 95706006 -146958347 + LTR67 LTR ERVL 407 536 -21 296 250 118 75 chr1 95706099 95706327 -146958026 - MLT1J LTR MaLR -50 461 224 1768 150 13 42 chr1 95706376 95706683 -146957670 + AluJo SINE Alu 1 298 -14 241 277 12 36 chr1 95707092 95707175 -146957178 - L2 LINE L2 -49 3264 3184 1973 166 7 0 chr1 95707552 95707860 -146956493 + AluJb SINE Alu 1 310 -2 288 200 0 0 chr1 95707862 95707932 -146956421 + GA-rich Low_complexity Low_complexity 3 72 0 1118 155 114 27 chr1 95707933 95708248 -146956105 - LTR44 LTR ERV1 -129 390 1 489 238 56 23 chr1 95708359 95708597 -146955756 - L1ME4a LINE L1 -235 6280 6029 832 297 87 50 chr1 95708620 95708924 -146955429 - L1ME4a LINE L1 -1170 5370 5079 575 229 57 0 chr1 95708924 95709046 -146955307 - FLAM_A SINE Alu -4 129 1 832 297 87 50 chr1 95709046 95709918 -146954435 - L1ME4a LINE L1 -1461 5079 4151 592 310 128 44 chr1 95710177 95711372 -146952981 - L1MDa LINE L1 -2792 3748 2430 2026 173 45 123 chr1 95711476 95712038 -146952315 - MLT2B1 LTR ERVL -2 518 1 11355 163 34 10 chr1 95712038 95714156 -146950197 - ERVL-B1 LTR ERVL -7 5757 3590 412 291 73 45 chr1 95714395 95714615 -146949738 - HAL1b LINE L1 -408 940 715 21 0 0 0 chr1 95714978 95714999 -146949354 + AT_rich Low_complexity Low_complexity 1 21 0 14654 154 29 9 chr1 95716074 95718668 -146945685 + L1M1 LINE L1 12 2657 -4908 6123 0 1 0 chr1 95718675 95719383 -146944970 - L1HS LINE L1 0 6155 5447 722 63 71 24 chr1 95719381 95719507 -146944846 + L1M1 LINE L1 2837 2968 -4597 * 3828 116 62 7 chr1 95719510 95720185 -146944168 + L1M1 LINE L1 2674 3385 -4180 300 326 124 0 chr1 95720650 95720779 -146943574 - MIR SINE MIR -31 231 87 1986 137 3 13 chr1 95720801 95721100 -146943253 - AluSx SINE Alu -16 296 1 2923 9 0 0 chr1 95721729 95722046 -146942307 + AluYb8 SINE Alu 1 317 -1 453 268 42 7 chr1 95723189 95723331 -146941022 + MIR SINE MIR 104 250 -12 252 359 43 17 chr1 95724035 95724152 -146940201 - L2 LINE L2 -10 3303 3184 712 234 146 0 chr1 95724289 95724447 -146939906 - MER5A DNA MER1_type -2 187 7 273 134 164 0 chr1 95724461 95724528 -146939825 - MER5B DNA MER1_type 0 178 101 197 284 40 27 chr1 95725411 95725485 -146938868 + L2 LINE L2 218 292 -3022 346 290 11 0 chr1 95725516 95725609 -146938744 + MIR SINE MIR 152 245 -17 696 221 82 54 chr1 95725713 95725959 -146938394 + MIR SINE MIR 1 257 -5 261 301 11 0 chr1 95726256 95726349 -146938004 - L1P LINE L1 -2460 3686 3593 2099 114 16 16 chr1 95726446 95726753 -146937600 - AluSx SINE Alu -5 307 1 248 290 65 9 chr1 95726817 95727048 -146937305 - L1M4 LINE L1 -2691 3455 3212 781 274 125 48 chr1 95727055 95727293 -146937060 - L1M4 LINE L1 -2983 3163 2945 1690 164 25 14 chr1 95727293 95727579 -146936774 + AluJo SINE Alu 5 293 -19 781 274 125 48 chr1 95727579 95727876 -146936477 - L1M4 LINE L1 -3201 2945 2587 358 298 22 34 chr1 95727903 95728081 -146936272 - L1M4 LINE L1 -3739 2407 2232 387 243 186 7 chr1 95728580 95728720 -146935633 + MIR SINE MIR 79 243 -19 23 33 0 0 chr1 95729339 95729369 -146934984 + AT_rich Low_complexity Low_complexity 1 30 0 2014 130 3 0 chr1 95729807 95730120 -146934233 - AluSq SINE Alu 0 314 1 662 290 204 13 chr1 95731225 95731608 -146932745 + L2 LINE L2 1937 2392 -922 2268 105 0 7 chr1 95731728 95732033 -146932320 + AluSx SINE Alu 1 303 -9 1885 146 7 17 chr1 95732178 95732480 -146931873 + AluSx SINE Alu 2 300 -12 2576 209 58 22 chr1 95732637 95733384 -146930969 - L1ME1 LINE L1 0 6178 5380 417 268 191 23 chr1 95733477 95733697 -146930656 + MIR SINE MIR 5 261 -1 310 276 0 122 chr1 95734214 95734370 -146929983 + L2 LINE L2 3175 3311 -2 192 328 0 0 chr1 95734389 95734447 -146929906 - L2 LINE L2 -323 2949 2892 514 273 45 7 chr1 95734480 95734634 -146929719 - MIR SINE MIR 0 262 103 354 314 103 70 chr1 95734660 95735029 -146929324 - L2 LINE L2 -479 2835 2455 240 100 0 0 chr1 95735359 95735399 -146928954 + (TG)n Simple_repeat Simple_repeat 2 41 0 832 245 63 21 chr1 95736559 95736796 -146927557 - MIR SINE MIR -4 258 12 196 208 62 21 chr1 95736899 95736947 -146927406 - L3 LINE CR1 -155 1422 1373 249 342 34 20 chr1 95738724 95738873 -146925480 + GA-rich Low_complexity Low_complexity 4 154 0 979 212 47 4 chr1 95738892 95739135 -146925218 - MER58 DNA MER1_type -62 279 28 561 165 57 6 chr1 95739142 95739300 -146925053 + MER63 DNA MER1_type 848 1013 -47 23 77 0 0 chr1 95739634 95739673 -146924680 + AT_rich Low_complexity Low_complexity 1 39 0 181 258 27 147 chr1 95742122 95742421 -146921932 + L2 LINE L2 2639 2901 -413 27 0 0 0 chr1 95742944 95742971 -146921382 + AT_rich Low_complexity Low_complexity 1 27 0 548 89 0 0 chr1 95743426 95743505 -146920848 - L1PA2 LINE L1 -306 5849 5771 281 306 0 34 chr1 95744835 95744982 -146919371 + G-rich Low_complexity Low_complexity 4 145 0 2469 206 16 3 chr1 95745436 95746067 -146918286 + L1 LINE L1 4355 4993 -1153 343 245 53 40 chr1 95746327 95746478 -146917875 + LTR16C LTR ERVL 339 491 0 4077 22 0 0 chr1 95746654 95747153 -146917200 + L1P LINE L1 4159 4657 -1489 375 320 70 6 chr1 95748338 95748510 -146915843 + MIR SINE MIR 68 250 -12 277 135 54 95 chr1 95748992 95749066 -146915287 + MIR SINE MIR 132 202 -60 244 248 29 29 chr1 95749067 95749172 -146915181 + L1MD3 LINE L1 7891 7995 0 279 116 0 0 chr1 95749179 95749222 -146915131 + MIR SINE MIR 216 258 -4 260 229 12 0 chr1 95750205 95750288 -146914065 + (CA)n Simple_repeat Simple_repeat 2 85 0 313 314 186 0 chr1 95750417 95750519 -146913834 - L2 LINE L2 -1 3271 3151 23 0 0 0 chr1 95750790 95750813 -146913540 + AT_rich Low_complexity Low_complexity 1 23 0 335 282 92 0 chr1 95750905 95751036 -146913317 - MIR SINE MIR -97 165 23 1168 272 143 35 chr1 95751048 95751650 -146912703 + L2 LINE L2 1512 2178 -1136 570 236 127 36 chr1 95752133 95752353 -146912000 - MIR SINE MIR -4 258 19 627 219 92 15 chr1 95753388 95753446 -146910907 - MER5A DNA MER1_type 0 189 137 2265 39 0 0 chr1 95753446 95753704 -146910649 + AluY SINE Alu 37 294 -17 627 219 92 15 chr1 95753704 95753816 -146910537 - MER5A DNA MER1_type -52 137 4 508 358 57 57 chr1 95754532 95754985 -146909368 - L2 LINE L2 0 3272 2820 1391 162 5 0 chr1 95756055 95756265 -146908088 - AluJb SINE Alu -20 292 82 686 145 0 101 chr1 95756269 95756407 -146907946 - FLAM_C SINE Alu -9 124 1 255 321 82 38 chr1 95756645 95756985 -146907368 + L1ME4a LINE L1 3602 3956 -2190 2144 95 14 20 chr1 95757284 95757578 -146906775 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr1 95757971 95757992 -146906361 + AT_rich Low_complexity Low_complexity 1 21 0 373 326 146 16 chr1 95758041 95758740 -146905613 + L1ME4a LINE L1 3983 4772 -1374 2413 63 0 3 chr1 95758740 95759051 -146905302 + AluY SINE Alu 1 310 0 589 272 131 16 chr1 95759443 95759546 -146904807 + L1ME4a LINE L1 5264 5354 -767 1613 132 0 28 chr1 95759546 95759797 -146904556 + AluJb SINE Alu 69 312 0 589 272 131 16 chr1 95759797 95760035 -146904318 + L1ME4a LINE L1 5354 5663 -458 1928 139 10 13 chr1 95760273 95760576 -146903777 - AluSx SINE Alu -10 302 1 36 0 0 0 chr1 95760584 95760620 -146903733 + AT_rich Low_complexity Low_complexity 1 36 0 270 240 104 16 chr1 95760692 95760817 -146903536 + L1ME4a LINE L1 5982 6117 -4 218 327 125 30 chr1 95762252 95762420 -146901933 + MER5A DNA MER1_type 6 189 0 189 222 333 17 chr1 95762732 95762849 -146901504 - MIR SINE MIR -6 256 103 189 246 35 53 chr1 95762863 95762920 -146901433 - L2 LINE L2 -12 3260 3205 1963 174 50 11 chr1 95762956 95763317 -146901036 - THE1C LTR MaLR 0 375 1 2245 136 49 27 chr1 95764993 95765155 -146899198 - THE1C LTR MaLR 0 375 218 225 0 0 0 chr1 95765155 95765180 -146899173 + (GA)n Simple_repeat Simple_repeat 1 25 0 2245 136 49 27 chr1 95765180 95765384 -146898969 - THE1C LTR MaLR -157 218 1 23 0 0 0 chr1 95767503 95767526 -146896827 + AT_rich Low_complexity Low_complexity 1 23 0 202 74 0 0 chr1 95768339 95768366 -146895987 + L2 LINE L2 3139 3165 -107 1310 244 85 41 chr1 95769029 95769464 -146894889 - LTR16A1 LTR ERVL 0 457 4 1662 158 20 50 chr1 95769921 95770224 -146894129 + AluJb SINE Alu 1 294 -18 354 271 52 0 chr1 95770977 95771073 -146893280 + MIR SINE MIR 34 134 -74 180 111 0 0 chr1 95773906 95773933 -146890420 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1180 219 23 5 chr1 95774909 95775124 -146889229 - MER20 DNA MER1_type 0 219 1 470 273 149 10 chr1 95775141 95775335 -146889018 + MIR SINE MIR 42 262 0 2333 77 7 0 chr1 95775879 95776165 -146888188 - AluSc SINE Alu -21 288 1 2128 111 17 0 chr1 95776998 95777287 -146887066 + AluSq SINE Alu 1 294 -19 468 35 0 0 chr1 95777289 95777347 -146887006 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 244 226 52 22 chr1 95778327 95778452 -146885901 + MER5A DNA MER1_type 8 189 0 279 309 12 12 chr1 95779971 95780055 -146884298 - L2 LINE L2 0 3272 3189 26 30 0 0 chr1 95780505 95780538 -146883815 + AT_rich Low_complexity Low_complexity 1 33 0 299 175 0 0 chr1 95781872 95781929 -146882424 + HERVK22 LTR ERVK 279 335 -7618 289 298 40 66 chr1 95783958 95784384 -146879969 + HERVK22 LTR ERVK 3471 3885 -2952 346 275 29 29 chr1 95784967 95785138 -146879215 + HERVK22 LTR ERVK 4443 4613 -2224 476 325 40 40 chr1 95786320 95786772 -146877581 + HERVK22 LTR ERVK 6071 6522 -315 242 164 75 0 chr1 95788302 95788369 -146875984 - MER116 DNA Mariner 0 80 9 216 272 53 61 chr1 95788382 95788496 -146875857 + L2 LINE L2 791 903 -2411 251 392 20 20 chr1 95788716 95788818 -146875535 - L2 LINE L2 0 3272 3171 6486 91 10 0 chr1 95788861 95789748 -146874605 + L1PA14 LINE L1 5266 6161 0 23 0 0 0 chr1 95790043 95790066 -146874287 + AT_rich Low_complexity Low_complexity 1 23 0 1505 156 44 8 chr1 95790073 95790124 -146874229 - L1MA7 LINE L1 -11 6280 6232 312 27 0 0 chr1 95790124 95790161 -146874192 + (TA)n Simple_repeat Simple_repeat 1 37 0 1505 156 44 8 chr1 95790161 95790488 -146873865 - L1MA7 LINE L1 -59 6232 5782 360 0 0 0 chr1 95790502 95790542 -146873811 + (TG)n Simple_repeat Simple_repeat 2 41 0 224 200 17 0 chr1 95790544 95790604 -146873749 + (TA)n Simple_repeat Simple_repeat 2 62 0 2307 149 33 3 chr1 95790640 95791030 -146873323 - L1MA7 LINE L1 -535 5756 5355 20980 65 10 8 chr1 95791030 95793657 -146870696 + HERVL-A1 LTR ERVL 3015 5646 -8 3600 72 19 0 chr1 95793657 95794090 -146870263 + MLT2A1 LTR ERVL 4 444 0 1576 158 17 7 chr1 95794090 95794381 -146869972 - L1MA7 LINE L1 -786 5360 5067 195 42 0 0 chr1 95795235 95795259 -146869094 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1428 311 77 23 chr1 95795299 95795872 -146868481 - MER115 DNA AcHobo -1 692 89 5275 200 32 23 chr1 95795873 95796022 -146868331 - MER45B DNA AcHobo -541 1040 894 219 36 0 0 chr1 95796022 95796050 -146868303 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5275 200 32 23 chr1 95796050 95796931 -146867422 - MER45B DNA AcHobo -687 894 1 232 320 62 31 chr1 95796972 95797100 -146867253 - MIR SINE MIR -128 134 3 690 227 55 41 chr1 95797403 95797623 -146866730 - MIR SINE MIR -8 254 32 812 139 0 66 chr1 95798274 95798411 -146865942 - FLAM_C SINE Alu -4 129 2 207 152 0 0 chr1 95798828 95798874 -146865479 + T-rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr1 95798997 95799027 -146865326 + AT_rich Low_complexity Low_complexity 1 30 0 395 231 323 0 chr1 95799299 95799429 -146864924 - MER5A DNA MER1_type -7 182 11 252 271 198 10 chr1 95800101 95800197 -146864156 - L2 LINE L2 -33 3280 3167 210 118 0 0 chr1 95800197 95800231 -146864122 + (TAATG)n Simple_repeat Simple_repeat 3 36 0 537 342 49 23 chr1 95801495 95801840 -146862513 - L2 LINE L2 -1052 2262 1909 3744 163 93 0 chr1 95802266 95802892 -146861461 - LTR12 LTR ERV1 0 688 5 1711 208 57 50 chr1 95802907 95803507 -146860846 - pTR5 LTR ERV1 -1092 1346 743 2139 200 53 29 chr1 95803857 95804313 -146860040 - MLT1C LTR MaLR 0 467 1 5002 140 52 13 chr1 95804733 95804824 -146859529 + L1PA16 LINE L1 5231 5317 -849 2078 95 4 7 chr1 95804824 95805098 -146859255 + AluSg SINE Alu 17 289 -21 5002 140 52 13 chr1 95805098 95805889 -146858464 + L1PA16 LINE L1 5317 6148 -18 21 0 0 0 chr1 95805892 95805913 -146858440 + AT_rich Low_complexity Low_complexity 1 21 0 271 337 0 10 chr1 95805928 95806026 -146858327 - MIR3 SINE MIR -5 203 107 421 207 5 23 chr1 95806349 95806479 -146857874 + MLT1K LTR MaLR 142 248 -340 839 289 51 8 chr1 95806725 95806960 -146857393 - MIR SINE MIR -13 249 5 423 351 26 32 chr1 95806987 95807141 -146857212 + L2 LINE L2 3111 3263 -9 4181 139 27 28 chr1 95807302 95808052 -146856301 - L1MB3 LINE L1 -2 6181 5433 210 126 84 42 chr1 95808498 95808593 -146855760 + (TTATA)n Simple_repeat Simple_repeat 2 100 0 3447 8 0 0 chr1 95808691 95809079 -146855274 - L1PA2 LINE L1 0 6155 5768 611 196 152 44 chr1 95809685 95809843 -146854510 - MER5A DNA MER1_type 0 189 15 2120 130 0 10 chr1 95809844 95810143 -146854210 - AluSx SINE Alu -14 298 3 1186 69 0 50 chr1 95810227 95810386 -146853967 + AluSg/x SINE Alu 145 295 -17 380 280 125 12 chr1 95810437 95810605 -146853748 + MLT1J LTR MaLR 277 463 -48 2310 82 0 7 chr1 95810732 95811025 -146853328 + AluSc SINE Alu 1 291 -18 8046 196 42 20 chr1 95811097 95814293 -146850060 - L1MC1 LINE L1 0 6613 3350 11012 150 86 44 chr1 95814294 95816742 -146847611 - L1MC1 LINE L1 -3855 2571 21 301 247 37 12 chr1 95816830 95816889 -146847464 - MIR SINE MIR 0 262 199 351 0 0 0 chr1 95816889 95816928 -146847425 + (TA)n Simple_repeat Simple_repeat 2 40 0 301 247 37 12 chr1 95816928 95816949 -146847404 - MIR SINE MIR -63 199 180 188 111 28 0 chr1 95817071 95817107 -146847246 + A-rich Low_complexity Low_complexity 1 37 0 698 273 92 17 chr1 95817613 95817851 -146846502 + MIR SINE MIR 3 258 -4 487 322 66 40 chr1 95817865 95818259 -146846094 - LTR16A1 LTR ERVL 0 479 73 557 298 41 6 chr1 95818402 95818573 -146845780 + MIR SINE MIR 49 225 -37 281 270 40 32 chr1 95818828 95818954 -146845399 - MER113 DNA MER1_type? -123 398 272 398 226 12 0 chr1 95819097 95819181 -146845172 + MIR3 SINE MIR 98 182 -26 2186 109 0 0 chr1 95820125 95820439 -146843914 + AluSx SINE Alu 1 314 0 1064 94 56 17 chr1 95821238 95821418 -146842935 + L1MA4 LINE L1 5951 6137 -163 1225 133 28 0 chr1 95821418 95821599 -146842754 + AluSx SINE Alu 1 186 -126 765 140 37 37 chr1 95821599 95821763 -146842590 + L1MA4 LINE L1 6132 6295 -5 763 269 16 0 chr1 95822832 95823014 -146841339 + MIR SINE MIR 13 197 -65 6344 147 22 29 chr1 95823428 95825073 -146839280 + L1PB1 LINE L1 3964 5592 -559 2091 112 24 0 chr1 95825073 95825194 -146839159 + AluSg SINE Alu 1 118 -192 225 65 0 0 chr1 95825194 95825225 -146839128 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2091 112 24 0 chr1 95825225 95825390 -146838963 + AluSg SINE Alu 118 294 -16 6344 147 22 29 chr1 95825390 95825947 -146838406 + L1PB1 LINE L1 5592 6151 0 5436 171 23 5 chr1 95826463 95827522 -146836831 - L1MA5 LINE L1 -2 6298 5215 2232 109 0 10 chr1 95827536 95827847 -146836506 + AluSg SINE Alu 1 308 -2 584 265 180 75 chr1 95828156 95829039 -146835314 - L2 LINE L2 -90 3223 2243 307 309 93 19 chr1 95829619 95829781 -146834572 - MIR SINE MIR -26 236 63 801 116 8 16 chr1 95829782 95829911 -146834442 + AluSx SINE Alu 182 309 0 2467 63 0 0 chr1 95829967 95830268 -146834085 - AluY SINE Alu -10 301 1 2144 103 3 3 chr1 95832792 95833082 -146831271 + AluSx SINE Alu 3 292 -20 2689 81 10 15 chr1 95833123 95833516 -146830837 - L1PA14 LINE L1 0 6161 5771 1144 111 0 0 chr1 95833549 95833702 -146830651 - AluSq SINE Alu -160 153 1 17567 177 26 21 chr1 95833703 95837634 -146826719 - L1PA14 LINE L1 -376 5785 1827 2518 95 27 16 chr1 95837634 95838004 -146826349 - THE1C LTR MaLR -1 374 1 17567 177 26 21 chr1 95838004 95838301 -146826052 - L1PA14 LINE L1 -4334 1827 1533 246 343 94 17 chr1 95838612 95838793 -146825560 - MIR SINE MIR -43 219 25 545 306 44 29 chr1 95839555 95839761 -146824592 + MIR SINE MIR 16 224 -38 361 189 14 0 chr1 95839981 95840055 -146824298 + MER116 DNA Mariner 6 80 0 185 0 0 39 chr1 95841208 95841234 -146823119 + (CA)n Simple_repeat Simple_repeat 2 26 0 416 234 182 13 chr1 95841527 95841681 -146822672 - MER5A DNA MER1_type 0 189 10 2230 113 0 3 chr1 95841710 95842019 -146822334 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr1 95842266 95842288 -146822065 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 95842370 95842410 -146821943 + AT_rich Low_complexity Low_complexity 1 40 0 269 118 118 0 chr1 95842470 95842521 -146821832 - MER106A DNA MER1_type -134 102 46 200 146 0 42 chr1 95842601 95842649 -146821704 + (TATAA)n Simple_repeat Simple_repeat 2 47 0 200 321 49 0 chr1 95844670 95844751 -146819602 + MIR SINE MIR 178 262 0 29 0 0 0 chr1 95844902 95844931 -146819422 + AT_rich Low_complexity Low_complexity 1 29 0 434 286 68 51 chr1 95845379 95845613 -146818740 + L2 LINE L2 3032 3269 -3 520 345 82 5 chr1 95847265 95847471 -146816882 + MIR SINE MIR 10 231 -31 41 66 0 0 chr1 95847498 95847574 -146816779 + AT_rich Low_complexity Low_complexity 1 76 0 214 350 23 45 chr1 95847733 95847910 -146816443 + L2 LINE L2 2816 2988 -325 422 266 48 0 chr1 95848035 95848159 -146816194 + MIR SINE MIR 47 176 -86 401 345 158 33 chr1 95848205 95848743 -146815610 - L2 LINE L2 -85 3228 2622 236 200 146 0 chr1 95848977 95849032 -146815321 + L2 LINE L2 3233 3295 -18 202 248 248 38 chr1 95850454 95850559 -146813794 - L2 LINE L2 -9 3263 3137 257 255 61 31 chr1 95852420 95852518 -146811835 + L2 LINE L2 2391 2491 -823 943 191 63 0 chr1 95852962 95853151 -146811202 + L1MA8 LINE L1 6031 6231 -60 248 262 16 0 chr1 95854881 95854942 -146809411 + MIR SINE MIR 191 252 -10 1912 151 0 3 chr1 95854946 95855231 -146809122 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr1 95855248 95855270 -146809083 + AT_rich Low_complexity Low_complexity 1 22 0 1559 168 3 72 chr1 95855287 95855620 -146808733 - AluJb SINE Alu -2 310 1 349 248 4 3 chr1 95856466 95856544 -146807809 - MER5A DNA MER1_type -10 179 91 214 179 26 0 chr1 95857371 95857410 -146806943 + MIR SINE MIR 205 244 -18 2390 105 0 3 chr1 95857437 95857779 -146806574 - L1PA13 LINE L1 -3 6160 5820 759 246 18 0 chr1 95861322 95861493 -146802860 - MER45A DNA AcHobo -4 174 1 232 369 12 0 chr1 95862127 95862211 -146802142 + MLT1F LTR MaLR 1 85 -457 429 237 224 23 chr1 95862397 95862569 -146801784 + MLT1H LTR MaLR 390 555 0 1728 278 110 9 chr1 95862578 95863144 -146801209 - MLT2E LTR ERVL 0 628 3 927 373 20 1 chr1 95863144 95863455 -146800898 + L1MA8 LINE L1 5867 6228 -63 419 174 0 0 chr1 95863456 95863525 -146800828 + Tigger1 DNA MER2_type 1 69 -2349 319 294 49 0 chr1 95864072 95864174 -146800179 - MER91C DNA MER1_type -33 107 1 486 70 0 0 chr1 95864807 95864878 -146799475 + (TC)n Simple_repeat Simple_repeat 2 72 0 288 0 0 0 chr1 95864878 95864910 -146799443 + (CA)n Simple_repeat Simple_repeat 1 32 0 296 337 84 48 chr1 95865009 95865341 -146799012 + L2 LINE L2 2349 2692 -622 252 306 224 0 chr1 95865360 95865458 -146798895 + L2 LINE L2 3192 3311 -2 351 286 23 88 chr1 95866124 95866295 -146798058 + MER91A DNA MER1_type 5 164 -32 306 323 61 0 chr1 95866355 95866454 -146797899 + L2 LINE L2 2668 2772 -542 445 221 10 10 chr1 95866501 95866605 -146797748 + LTR45B LTR ERV1 24 127 -362 753 148 46 74 chr1 95866671 95866866 -146797487 + LTR45B LTR ERV1 322 521 -4 285 323 96 89 chr1 95867087 95867390 -146796963 + L2 LINE L2 2968 3272 0 531 306 164 18 chr1 95867930 95868260 -146796093 + L2 LINE L2 2935 3312 -1 1119 248 13 48 chr1 95868429 95868740 -146795613 - L1ME3A LINE L1 -62 6108 5809 377 294 59 55 chr1 95868960 95869260 -146795093 - L1ME3A LINE L1 -611 5559 5261 268 256 51 0 chr1 95869308 95869386 -146794967 - L1M4 LINE L1 -690 5484 5403 203 309 41 41 chr1 95870067 95870154 -146794199 + L3b LINE CR1 1384 1473 -110 2262 123 0 7 chr1 95870154 95870464 -146793889 + AluY SINE Alu 2 309 -2 203 309 41 41 chr1 95870464 95870499 -146793854 + L3b LINE CR1 1472 1506 -77 251 273 45 83 chr1 95870908 95871040 -146793313 + MIR SINE MIR 119 245 -17 267 280 119 59 chr1 95871084 95871202 -146793151 - L2 LINE L2 -10 3262 3138 180 0 0 0 chr1 95871202 95871222 -146793131 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2192 146 97 3 chr1 95871601 95871992 -146792361 - MSTA LTR MaLR 0 428 1 8257 170 38 58 chr1 95871997 95872510 -146791843 - MSTA-int LTR MaLR -5 1646 1124 4703 120 4 3 chr1 95872510 95873200 -146791153 + LTR8 LTR ERV1 1 691 0 8257 170 38 58 chr1 95873200 95873897 -146790456 - MSTA-int LTR MaLR -527 1124 477 1994 125 7 16 chr1 95873897 95874200 -146790153 + AluSq SINE Alu 1 300 -13 8257 170 38 58 chr1 95874200 95874666 -146789687 - MSTA-int LTR MaLR -1174 477 3 1864 169 91 18 chr1 95874670 95875066 -146789287 - MSTA LTR MaLR -2 426 2 197 116 0 116 chr1 95875270 95875313 -146789040 - L2 LINE L2 -5 3308 3271 2573 142 22 37 chr1 95875446 95875904 -146788449 + MER4C LTR ERV1 14 464 -1 21762 41 0 1 chr1 95876071 95878764 -146785589 + L1P LINE L1 2246 4936 -1210 357 138 15 0 chr1 95878766 95878831 -146785522 - L1P5 LINE L1 -627 5524 5459 22 88 0 0 chr1 95879078 95879135 -146785218 + AT_rich Low_complexity Low_complexity 1 57 0 1391 156 0 5 chr1 95879387 95879598 -146784755 - AluJb SINE Alu -101 211 2 284 191 189 0 chr1 95879599 95879744 -146784609 - L1MC4a LINE L1 -831 6977 6914 276 59 0 59 chr1 95879753 95879804 -146784549 - L1MB3 LINE L1 -13 6170 6123 1783 143 14 4 chr1 95879955 95880266 -146784087 + AluSx SINE Alu 1 314 0 1928 190 10 13 chr1 95880287 95880681 -146783672 - L1MB5 LINE L1 -57 6117 5725 931 242 38 4 chr1 95880682 95880922 -146783431 - L1M4c LINE L1 -4748 1636 1389 6676 133 10 17 chr1 95880959 95881593 -146782760 - L1MA2 LINE L1 0 6304 5667 2247 83 0 4 chr1 95881593 95881871 -146782482 + AluY SINE Alu 16 292 -19 6676 133 10 17 chr1 95881871 95882943 -146781410 - L1MA2 LINE L1 -637 5667 4612 1782 140 54 57 chr1 95882943 95883369 -146780984 - THE1C LTR MaLR 0 428 1 22587 186 17 31 chr1 95883378 95885747 -146778606 - L1P LINE L1 -1545 4601 2284 336 24 0 0 chr1 95885747 95885788 -146778565 + MADE1 DNA Mariner 2 42 -38 22587 186 17 31 chr1 95885788 95888042 -146776311 - L1P LINE L1 -3862 2284 1 181 274 118 0 chr1 95889017 95889068 -146775285 - MIR SINE MIR -157 105 49 1510 186 0 58 chr1 95890158 95890486 -146773867 + AluJo SINE Alu 1 309 -3 315 0 0 0 chr1 95890547 95890582 -146773771 + (TG)n Simple_repeat Simple_repeat 2 36 0 188 380 73 64 chr1 95891535 95891864 -146772489 + L2 LINE L2 2842 3173 -99 253 111 0 0 chr1 95892022 95892058 -146772295 - L2 LINE L2 -15 3298 3263 182 241 52 0 chr1 95892504 95892562 -146771791 - MIR SINE MIR -53 209 149 570 293 52 24 chr1 95893593 95893842 -146770511 + MIR SINE MIR 5 260 -2 26 30 0 0 chr1 95893842 95893875 -146770478 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr1 95893954 95893985 -146770368 + AT_rich Low_complexity Low_complexity 1 31 0 255 329 51 15 chr1 95894875 95895012 -146769341 - L2 LINE L2 -214 3058 2917 703 292 62 0 chr1 95895013 95895191 -146769162 + MER91B DNA MER1_type 1 189 -1 311 347 196 21 chr1 95895191 95895558 -146768795 - L2 LINE L2 -384 2930 2498 2142 101 0 0 chr1 95896943 95897211 -146767142 + AluSx SINE Alu 1 268 -44 511 250 170 10 chr1 95897360 95897648 -146766705 - L1ME4a LINE L1 -196 5925 5592 23 54 0 0 chr1 95897661 95897698 -146766655 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr1 95898055 95898080 -146766273 + AT_rich Low_complexity Low_complexity 1 25 0 2149 117 3 0 chr1 95898511 95898846 -146765507 + AluSx SINE Alu 1 336 0 28 0 0 0 chr1 95898849 95898877 -146765476 + AT_rich Low_complexity Low_complexity 1 28 0 1680 192 14 0 chr1 95898889 95899186 -146765167 + AluJb SINE Alu 1 301 -11 2182 108 10 0 chr1 95899590 95899885 -146764468 + AluSq SINE Alu 1 298 -15 287 243 78 21 chr1 95900416 95900526 -146763827 - MIR3 SINE MIR -40 168 81 231 353 29 48 chr1 95900510 95900717 -146763636 + L2 LINE L2 2442 2644 -670 * 338 283 40 30 chr1 95902914 95903013 -146761340 - MIR SINE MIR -162 100 1 510 282 58 26 chr1 95903468 95903624 -146760729 - L2 LINE L2 -1 3271 3111 2285 80 3 13 chr1 95903763 95904074 -146760279 + AluSx SINE Alu 2 309 -3 205 211 0 0 chr1 95905179 95905217 -146759136 - L2 LINE L2 -8 3305 3268 226 393 0 0 chr1 95905934 95906018 -146758335 + MIR3 SINE MIR 82 165 -43 262 30 0 0 chr1 95906923 95906956 -146757397 + L2 LINE L2 3275 3307 -6 219 340 9 38 chr1 95906994 95907017 -146757336 - MIR SINE MIR -125 137 115 2253 100 0 13 chr1 95907017 95907326 -146757027 + AluSc SINE Alu 5 309 0 219 340 9 38 chr1 95907326 95907408 -146756945 - MIR SINE MIR -147 115 35 23 54 0 0 chr1 95907415 95907452 -146756901 + AT_rich Low_complexity Low_complexity 1 37 0 2988 69 5 24 chr1 95907452 95907872 -146756481 - L1MA2 LINE L1 0 6304 5893 21 0 0 0 chr1 95908772 95908793 -146755560 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 95909059 95909081 -146755272 + AT_rich Low_complexity Low_complexity 1 22 0 420 286 29 0 chr1 95909377 95909482 -146754871 + L2 LINE L2 3200 3307 -6 417 278 46 17 chr1 95909850 95910023 -146754330 + L1M4 LINE L1 3740 3917 -2229 315 291 139 19 chr1 95910348 95910506 -146753847 + L1M4 LINE L1 4149 4325 -1821 1947 229 59 84 chr1 95910510 95911135 -146753218 + L1MCa LINE L1 32 640 -5786 1361 118 0 36 chr1 95911135 95911355 -146752998 + L1PA15 LINE L1 5954 6165 0 1947 229 59 84 chr1 95911355 95911422 -146752931 + L1MCa LINE L1 640 707 -5719 38413 84 4 7 chr1 95911426 95917589 -146746764 + L1PA6 LINE L1 11 6154 0 392 164 0 0 chr1 95917586 95917653 -146746700 + L1MCa LINE L1 689 755 -5671 * 15909 155 17 15 chr1 95917766 95921900 -146742453 + L1MA3 LINE L1 3312 7464 -260 9558 25 7 2 chr1 95921900 95923819 -146740534 + L1PA4 LINE L1 4229 6155 0 1285 233 38 59 chr1 95923819 95924296 -146740057 + L1MCb LINE L1 613 1079 -4966 * 7297 172 9 8 chr1 95924290 95925521 -146738832 + L1M1 LINE L1 7 1238 -6327 3275 185 7 4 chr1 95925525 95926087 -146738266 - L1M1 LINE L1 -6995 570 7 1082 223 47 53 chr1 95926081 95926422 -146737931 - L1MCb LINE L1 -4966 1079 741 * 6583 145 13 2 chr1 95926414 95927416 -146736937 + L1M1 LINE L1 1238 2250 -5315 759 137 23 0 chr1 95927412 95927543 -146736810 + L1M1 LINE L1 3654 3787 -3778 * 15914 148 16 16 chr1 95927525 95932329 -146732024 + L1MA3 LINE L1 2648 7464 -260 9602 23 5 0 chr1 95932329 95934243 -146730110 + L1PA3 LINE L1 4229 6150 -5 1610 95 21 0 chr1 95934248 95934489 -146729864 + L1MA3 LINE L1 7479 7724 0 761 185 0 0 chr1 95934580 95934699 -146729654 + FLAM_C SINE Alu 1 119 -24 252 0 0 0 chr1 95934699 95934727 -146729626 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1171 157 63 65 chr1 95934729 95935318 -146729035 + L1MCb LINE L1 1076 1855 -4709 1932 96 96 0 chr1 95935318 95935590 -146728763 - AluSx SINE Alu -13 299 2 1171 157 63 65 chr1 95935590 95935706 -146728647 + L1MCb LINE L1 1855 1970 -4594 367 239 11 22 chr1 95935707 95935799 -146728554 + MLT1F LTR MaLR 1 91 -451 404 260 39 24 chr1 95935863 95935990 -146728363 + MLT1F-int LTR MaLR 1243 1371 0 2155 238 35 28 chr1 95935990 95936528 -146727825 + MLT1F LTR MaLR 1 542 0 328 331 141 23 chr1 95936603 95936908 -146727445 + L1M3 LINE L1 4696 5036 -1110 322 264 69 64 chr1 95936912 95937361 -146726992 + L1M3 LINE L1 5010 5463 -801 5362 203 38 26 chr1 95937366 95938036 -146726317 + L1 LINE L1 3371 4065 -2081 2281 77 3 77 chr1 95938036 95938374 -146725979 + AluSq SINE Alu 1 313 0 5362 203 38 26 chr1 95938374 95938984 -146725369 + L1 LINE L1 4065 4666 -1480 36059 26 0 0 chr1 95939304 95944388 -146719965 - L1HS LINE L1 0 6155 1072 20441 152 39 9 chr1 95944888 95948319 -146716034 - L1M1 LINE L1 -3940 3625 84 1733 145 57 11 chr1 95948319 95948601 -146715752 + AluSx SINE Alu 1 295 -17 20441 152 39 9 chr1 95948601 95948666 -146715687 - L1M1 LINE L1 -7481 84 22 294 122 0 0 chr1 95948667 95948716 -146715637 - L1M4c LINE L1 -5002 1382 1334 * 402 195 0 24 chr1 95948714 95948796 -146715557 + L1ME LINE L1 5561 5640 -530 380 288 25 6 chr1 95948930 95949093 -146715260 + L1ME LINE L1 5620 5785 -377 850 195 117 12 chr1 95949094 95949350 -146715003 + L1M4 LINE L1 4376 4658 -1488 28937 73 15 5 chr1 95949375 95953252 -146711101 - L1P LINE L1 -2224 3922 9 2240 103 0 17 chr1 95953521 95953822 -146710531 - AluSg SINE Alu -14 296 1 615 271 80 49 chr1 95954001 95954226 -146710127 - L2 LINE L2 -968 2346 2115 254 354 96 52 chr1 95954516 95955023 -146709330 - L2 LINE L2 0 3272 2752 232 367 50 8 chr1 95955123 95955243 -146709110 - L2 LINE L2 -256 3057 2933 354 123 228 70 chr1 95955354 95955468 -146708885 - Zaphod DNA AcHobo -1 4030 3899 1865 158 61 22 chr1 95955631 95955992 -146708361 - THE1C LTR MaLR 0 375 1 1399 167 20 13 chr1 95956369 95956675 -146707678 - L1MA4 LINE L1 -5 6295 5988 23 68 0 0 chr1 95956793 95956837 -146707516 + AT_rich Low_complexity Low_complexity 1 44 0 429 20 0 0 chr1 95956883 95956933 -146707420 + (TG)n Simple_repeat Simple_repeat 1 50 0 479 259 149 59 chr1 95958248 95958537 -146705816 + L2 LINE L2 1541 1855 -1459 1359 321 89 14 chr1 95958559 95959262 -146705091 + L2 LINE L2 2304 3053 -260 373 267 95 0 chr1 95959262 95959378 -146704975 + L2 LINE L2 3175 3301 -12 2572 267 79 53 chr1 95959516 95960281 -146704072 + L1 LINE L1 1 808 -5333 5183 83 18 0 chr1 95960281 95960990 -146703363 + LTR30 LTR ERV1 1 722 0 2572 267 79 53 chr1 95960990 95961401 -146702952 + L1 LINE L1 808 1207 -4934 4230 179 61 9 chr1 95961403 95962351 -146702002 + L1PBa LINE L1 6 1002 -5861 2452 185 4 0 chr1 95962356 95962837 -146701516 + L1 LINE L1 3696 4178 -2032 424 206 26 58 chr1 95963230 95963385 -146700968 - L1MC5 LINE L1 -212 7749 7600 277 366 46 8 chr1 95963412 95963543 -146700810 + L2 LINE L2 2699 2834 -480 704 163 74 15 chr1 95964101 95964236 -146700117 + AluJb SINE Alu 1 143 -169 625 149 0 0 chr1 95964235 95964329 -146700024 + AluSg/x SINE Alu 205 298 -14 * 544 332 88 56 chr1 95964330 95964700 -146699653 + L2 LINE L2 2360 2716 -556 972 207 87 57 chr1 95964700 95965034 -146699319 - MER2 DNA MER2_type 0 344 1 544 332 88 56 chr1 95965034 95965534 -146698819 + L2 LINE L2 2716 3272 0 197 295 0 16 chr1 95965529 95965590 -146698763 + MIR SINE MIR 185 244 -18 * 324 227 0 34 chr1 95965993 95966081 -146698272 - MIR SINE MIR 0 262 178 24 32 0 0 chr1 95966229 95966260 -146698093 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr1 95966287 95966313 -146698040 + AT_rich Low_complexity Low_complexity 1 26 0 1599 56 0 0 chr1 95966313 95966511 -146697842 - L1PA5 LINE L1 -2 6152 5955 595 295 40 44 chr1 95966622 95966873 -146697480 + MIR SINE MIR 7 256 -6 187 318 143 8 chr1 95967243 95967369 -146696984 + L2 LINE L2 2595 2737 -577 23 54 0 0 chr1 95967517 95967554 -146696799 + AT_rich Low_complexity Low_complexity 1 37 0 2362 68 45 0 chr1 95967979 95968271 -146696082 - AluSp SINE Alu -8 305 1 322 279 49 0 chr1 95968273 95968395 -146695958 - L1ME LINE L1 -334 5828 5701 27224 57 3 0 chr1 95968400 95972005 -146692348 + L1P LINE L1 2 3617 -2529 * 38294 45 0 3 chr1 95972002 95976949 -146687404 + L1P LINE L1 1 4936 -1210 4924 193 13 2 chr1 95976951 95978264 -146686089 - L1P5 LINE L1 -627 5524 4204 36433 34 29 1 chr1 95978384 95983057 -146681296 - L1P LINE L1 -1345 4801 2 322 279 49 0 chr1 95983062 95983184 -146681169 + L1ME LINE L1 5701 5828 -334 2388 62 45 0 chr1 95983186 95983478 -146680875 + AluSp SINE Alu 1 305 -8 23 54 0 0 chr1 95983903 95983940 -146680413 + AT_rich Low_complexity Low_complexity 1 37 0 187 318 143 8 chr1 95984088 95984214 -146680139 - L2 LINE L2 -577 2737 2595 595 295 40 44 chr1 95984584 95984835 -146679518 - MIR SINE MIR -6 256 7 1599 56 0 0 chr1 95984946 95985144 -146679209 + L1PA5 LINE L1 5955 6152 -2 26 0 0 0 chr1 95985144 95985170 -146679183 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr1 95985197 95985228 -146679125 + AT_rich Low_complexity Low_complexity 1 31 0 324 227 0 34 chr1 95985376 95985464 -146678889 + MIR SINE MIR 178 262 0 24 32 0 0 chr1 95985464 95985495 -146678858 + AT_rich Low_complexity Low_complexity 1 31 0 197 295 0 16 chr1 95985867 95985928 -146678425 - MIR SINE MIR -18 244 185 * 544 332 88 56 chr1 95985923 95986423 -146677930 - L2 LINE L2 0 3272 2716 972 207 87 57 chr1 95986423 95986757 -146677596 + MER2 DNA MER2_type 1 344 0 544 332 88 56 chr1 95986757 95987127 -146677226 - L2 LINE L2 -556 2716 2360 625 149 0 0 chr1 95987128 95987222 -146677131 - AluSg/x SINE Alu -14 295 202 * 704 163 74 15 chr1 95987221 95987356 -146676997 - AluJb SINE Alu -169 143 1 277 366 46 8 chr1 95987914 95988045 -146676308 - L2 LINE L2 -480 2834 2699 424 206 26 58 chr1 95988072 95988227 -146676126 + L1MC5 LINE L1 7600 7749 -212 512 300 65 119 chr1 95988231 95988843 -146675510 - L2 LINE L2 -1073 2241 1683 2460 70 0 3 chr1 95988843 95989143 -146675210 + AluY SINE Alu 1 299 -12 512 300 65 119 chr1 95989143 95989354 -146674999 - L2 LINE L2 -1631 1683 1462 258 145 29 29 chr1 95989679 95989748 -146674605 + (TA)n Simple_repeat Simple_repeat 2 70 0 541 279 57 95 chr1 95989806 95990121 -146674232 - HAL1 LINE L1 -833 1674 1372 571 236 89 42 chr1 95990121 95990434 -146673919 - L1MEd LINE L1 -4862 1257 930 3585 109 25 7 chr1 95990485 95991033 -146673320 - LTR9B LTR ERV1 -86 558 1 12067 104 38 6 chr1 95991036 95992820 -146671533 - HUERS-P3b LTR ERV1 -6 7412 5572 259 341 0 0 chr1 95992926 95993011 -146671342 + L2 LINE L2 2221 2305 -1009 648 285 105 14 chr1 95994214 95994653 -146669700 - L1ME4a LINE L1 -159 5962 5484 295 248 127 43 chr1 95994674 95994973 -146669380 + HAL1b LINE L1 788 1111 -237 278 235 31 10 chr1 95995052 95995150 -146669203 + HAL1b LINE L1 1243 1342 -6 314 288 150 31 chr1 95995289 95995515 -146668838 - L1MC4a LINE L1 -1726 6082 5830 287 286 0 13 chr1 95995525 95995602 -146668751 + MER45B DNA AcHobo 203 278 -762 1358 158 65 25 chr1 95995631 95995910 -146668443 + MER45B DNA AcHobo 496 785 -255 5264 82 9 3 chr1 95995919 95996672 -146667681 - L1PB1 LINE L1 0 6151 5394 1243 135 43 57 chr1 95996672 95996709 -146667644 + MER45B DNA AcHobo 764 800 -781 2069 108 25 0 chr1 95996709 95996987 -146667366 + AluSg SINE Alu 1 285 -25 594 0 0 0 chr1 95996987 95997053 -146667300 + (CATAA)n Simple_repeat Simple_repeat 2 67 0 1243 135 43 57 chr1 95997053 95997295 -146667058 + MER45B DNA AcHobo 798 1040 0 383 169 13 13 chr1 95997367 95997444 -146666909 + MLT1L LTR MaLR 3 79 -536 282 132 0 0 chr1 95997531 95997584 -146666769 + (TA)n Simple_repeat Simple_repeat 2 54 0 295 273 30 28 chr1 95997786 95998016 -146666337 + MLT1J LTR MaLR 220 497 -14 474 264 33 157 chr1 95998034 95998282 -146666071 + L1MEd LINE L1 27 304 -5815 2896 134 27 10 chr1 95998282 95998797 -146665556 + L1MA8 LINE L1 5758 6281 -10 2307 87 21 0 chr1 95998805 95999092 -146665261 - AluSq SINE Alu -20 293 1 474 264 33 157 chr1 95999092 95999502 -146664851 + L1MEd LINE L1 311 611 -5508 385 240 65 7 chr1 95999795 96000028 -146664325 + L1MC4 LINE L1 7583 7995 0 22 0 0 0 chr1 96000383 96000405 -146663948 + AT_rich Low_complexity Low_complexity 1 22 0 620 200 166 14 chr1 96000511 96000656 -146663697 + MER5B DNA MER1_type 4 170 -8 2195 110 3 3 chr1 96000827 96001119 -146663234 + AluSx SINE Alu 1 292 -20 265 254 79 0 chr1 96002070 96002133 -146662220 + L2 LINE L2 3244 3311 -2 22 35 0 0 chr1 96002427 96002456 -146661897 + GC_rich Low_complexity Low_complexity 1 29 0 320 291 134 9 chr1 96004010 96004179 -146660174 - MIR SINE MIR -34 228 49 254 313 0 0 chr1 96004221 96004285 -146660068 - MIR3 SINE MIR -6 202 139 634 287 145 49 chr1 96004926 96005464 -146658889 - L2 LINE L2 -15 3298 2436 366 188 59 151 chr1 96005521 96005590 -146658763 + L1MC5 LINE L1 7713 7787 -174 2189 108 10 0 chr1 96005590 96005886 -146658467 - AluSq SINE Alu -9 304 6 366 188 59 151 chr1 96005886 96006055 -146658298 + L1MC5 LINE L1 7787 7929 -32 29 47 0 0 chr1 96006933 96006976 -146657377 + AT_rich Low_complexity Low_complexity 1 43 0 214 277 62 15 chr1 96007380 96007445 -146656908 - L2 LINE L2 -51 3221 3154 2368 91 0 0 chr1 96008212 96008510 -146655843 - AluSx SINE Alu -14 298 1 819 206 17 28 chr1 96008833 96009013 -146655340 + MER5B DNA MER1_type 1 178 0 23 54 0 0 chr1 96009839 96009876 -146654477 + AT_rich Low_complexity Low_complexity 1 37 0 32 57 0 0 chr1 96010044 96010097 -146654256 + AT_rich Low_complexity Low_complexity 1 53 0 222 268 241 0 chr1 96010345 96010457 -146653896 + MIR SINE MIR 3 141 -121 200 125 0 25 chr1 96011062 96011102 -146653251 + (TTTTA)n Simple_repeat Simple_repeat 4 42 0 274 143 0 0 chr1 96011107 96011149 -146653204 - AluJb SINE Alu -20 282 241 1084 143 0 11 chr1 96011152 96011327 -146653026 - AluJb SINE Alu -139 173 1 196 288 62 55 chr1 96011497 96011643 -146652710 + L2 LINE L2 2964 3110 -203 731 251 56 10 chr1 96011760 96011955 -146652398 + L2 LINE L2 3109 3312 -1 386 340 84 9 chr1 96013131 96013346 -146651007 - MIR SINE MIR -25 237 7 2015 113 0 34 chr1 96014198 96014528 -146649825 - AluSg SINE Alu 0 320 1 213 333 14 0 chr1 96014666 96014735 -146649618 - MIR SINE MIR -108 100 31 791 172 7 7 chr1 96014942 96015087 -146649266 + L1PA16 LINE L1 6019 6163 -3 2101 116 0 7 chr1 96015327 96015667 -146648686 - AluSx SINE Alu 0 312 1 2074 132 0 20 chr1 96015988 96016291 -146648062 - AluSx SINE Alu -15 297 1 28 0 0 0 chr1 96017209 96017237 -146647116 + AT_rich Low_complexity Low_complexity 1 28 0 36 77 0 0 chr1 96017251 96017329 -146647024 + AT_rich Low_complexity Low_complexity 1 78 0 2425 86 0 3 chr1 96017659 96017963 -146646390 + AluY SINE Alu 1 303 -8 227 195 171 0 chr1 96018324 96018406 -146645947 + L1ME4a LINE L1 5991 6086 -35 221 231 83 56 chr1 96018900 96019008 -146645345 - L2 LINE L2 -2 3311 3201 450 233 156 22 chr1 96019217 96019397 -146644956 - MIR SINE MIR -56 206 3 1479 102 107 20 chr1 96019712 96019956 -146644397 + MER2 DNA MER2_type 1 265 -80 717 155 14 35 chr1 96019956 96020098 -146644255 - FLAM_A SINE Alu -3 139 1 543 132 11 44 chr1 96020102 96020193 -146644160 + MER2 DNA MER2_type 258 345 0 2221 95 0 7 chr1 96021175 96021492 -146642861 + AluSx SINE Alu 1 315 0 646 246 97 17 chr1 96021807 96021982 -146642371 - MER20 DNA MER1_type -9 210 22 24 0 0 0 chr1 96022055 96022079 -146642274 + AT_rich Low_complexity Low_complexity 1 24 0 1866 152 3 7 chr1 96022536 96022839 -146641514 + AluJb SINE Alu 1 302 -10 454 122 47 0 chr1 96022839 96022946 -146641407 + (TA)n Simple_repeat Simple_repeat 1 112 0 228 284 15 0 chr1 96023237 96023304 -146641049 + MARNA DNA Mariner 466 533 -53 32 43 0 0 chr1 96023334 96023380 -146640973 + AT_rich Low_complexity Low_complexity 1 46 0 188 352 111 9 chr1 96025020 96025128 -146639225 - L2 LINE L2 -18 3295 3177 1080 168 123 0 chr1 96025364 96025567 -146638786 + MER46A DNA MER2_type 1 228 -8 361 291 10 0 chr1 96027679 96027782 -146636571 - MIR3 SINE MIR -3 205 102 22 56 0 0 chr1 96028355 96028391 -146635962 + AT_rich Low_complexity Low_complexity 1 36 0 2157 101 0 7 chr1 96028450 96028747 -146635606 - AluSq SINE Alu -18 295 1 1898 126 56 0 chr1 96029745 96030030 -146634323 + AluSq SINE Alu 3 303 -10 531 234 85 14 chr1 96031691 96031832 -146632521 - MER63B DNA MER1_type -242 194 44 528 311 60 68 chr1 96033613 96034206 -146630147 - L2 LINE L2 -2 3311 2718 506 209 47 47 chr1 96034950 96035098 -146629255 - MIR SINE MIR 0 262 115 5565 247 148 57 chr1 96035566 96036183 -146628170 - L2 LINE L2 -46 3267 2708 2239 71 0 0 chr1 96036183 96036494 -146627859 - AluY SINE Alu 0 327 17 5565 247 148 57 chr1 96036494 96036584 -146627769 - L2 LINE L2 -605 2708 2628 2003 129 0 4 chr1 96036584 96036885 -146627468 - AluSq SINE Alu 0 304 5 5565 247 148 57 chr1 96036885 96037808 -146626545 - L2 LINE L2 -685 2628 1791 1821 156 3 20 chr1 96037808 96038109 -146626244 + AluSq SINE Alu 1 296 -17 5565 247 148 57 chr1 96038109 96039209 -146625144 - L2 LINE L2 -1522 1791 261 26 82 0 0 chr1 96040500 96040561 -146623792 + AT_rich Low_complexity Low_complexity 1 61 0 1989 141 0 7 chr1 96040622 96040912 -146623441 + AluJb SINE Alu 1 288 -24 24 0 0 0 chr1 96041573 96041597 -146622756 + AT_rich Low_complexity Low_complexity 1 24 0 555 268 88 75 chr1 96042252 96042491 -146621862 - L2 LINE L2 0 3272 3031 474 276 68 59 chr1 96043079 96043300 -146621053 + MIR SINE MIR 34 256 -6 2175 115 3 3 chr1 96044532 96044828 -146619525 + AluSx SINE Alu 1 296 -16 357 216 0 14 chr1 96044844 96044918 -146619435 + MER5A DNA MER1_type 1 73 -116 235 270 48 0 chr1 96044979 96045042 -146619311 - L3 LINE CR1 -289 1288 1223 540 266 39 7 chr1 96045083 96045237 -146619116 + L2 LINE L2 3154 3312 -1 * 558 228 49 0 chr1 96045235 96045358 -146618995 + MER5A DNA MER1_type 61 189 0 1157 220 152 31 chr1 96045820 96046307 -146618046 - L1ME4a LINE L1 -65 6056 5511 274 248 83 50 chr1 96046681 96046802 -146617551 + MIR SINE MIR 63 187 -75 186 314 14 14 chr1 96047833 96047903 -146616450 + L2 LINE L2 3000 3069 -203 231 235 49 25 chr1 96048391 96048472 -146615881 + CT-rich Low_complexity Low_complexity 2 84 0 411 293 89 13 chr1 96049776 96049933 -146614420 + MIR SINE MIR 7 175 -87 781 190 86 0 chr1 96049935 96050098 -146614255 + MER5A DNA MER1_type 11 187 -2 266 341 11 0 chr1 96050100 96050188 -146614165 + MIR SINE MIR 174 262 0 418 271 8 42 chr1 96050894 96051012 -146613341 + MIR3 SINE MIR 81 194 -14 255 306 222 6 chr1 96051358 96051538 -146612815 - MIR SINE MIR -34 228 10 382 169 55 16 chr1 96051808 96051891 -146612462 + MER5A DNA MER1_type 93 188 -1 404 296 62 43 chr1 96052312 96052474 -146611879 - MIR SINE MIR -12 250 86 2408 74 0 0 chr1 96053290 96053601 -146610752 + AluY SINE Alu 1 311 0 538 268 141 27 chr1 96053818 96054038 -146610315 - MIR SINE MIR 0 262 18 681 283 117 0 chr1 96054646 96054869 -146609484 - MIR SINE MIR 0 262 14 233 229 143 0 chr1 96055230 96055300 -146609053 + MIR SINE MIR 150 229 -33 281 403 37 44 chr1 96056863 96057136 -146607217 + L2 LINE L2 2997 3267 -5 851 259 138 67 chr1 96057317 96057673 -146606680 - MLT1G1 LTR MaLR -3 592 182 2802 180 2 0 chr1 96057673 96057705 -146606648 - L1MB2 LINE L1 -2 6169 6139 2243 110 3 0 chr1 96057705 96058005 -146606348 + AluSx SINE Alu 3 303 -9 2802 180 2 0 chr1 96058005 96058478 -146605875 - L1MB2 LINE L1 -32 6139 5663 851 259 138 67 chr1 96058478 96058672 -146605681 - MLT1G1 LTR MaLR -413 182 3 801 234 98 16 chr1 96058803 96059047 -146605306 + L2 LINE L2 3050 3313 0 356 290 65 47 chr1 96059255 96059424 -146604929 - MIR3 SINE MIR 0 208 37 704 289 83 36 chr1 96059535 96060002 -146604351 + LTR16C LTR ERVL 1 489 -2 554 256 6 29 chr1 96060159 96060331 -146604022 + MER104 DNA Tc2 1 168 -12 2532 69 0 0 chr1 96061174 96061479 -146602874 - AluY SINE Alu -5 306 2 362 206 76 43 chr1 96061537 96061629 -146602724 + MER119 DNA MER1_type 40 134 -449 * 580 189 61 23 chr1 96061616 96061748 -146602605 + MER119 DNA MER1_type 446 582 -1 1805 166 0 31 chr1 96061756 96062076 -146602277 - AluJo SINE Alu 0 312 3 574 217 45 32 chr1 96062536 96062693 -146601660 + L2 LINE L2 3152 3310 -3 966 189 38 0 chr1 96062693 96062878 -146601475 + MER105 DNA DNA 12 203 -1 5799 151 31 17 chr1 96063470 96064923 -146599430 - L1PA16 LINE L1 0 6166 4708 525 214 67 73 chr1 96064962 96065140 -146599213 - MLT1L LTR MaLR -409 206 30 2235 206 76 6 chr1 96065673 96066145 -146598208 - MLT1D LTR MaLR 0 505 1 1528 280 17 15 chr1 96066418 96066821 -146597532 - MLT1I LTR MaLR -4 405 2 547 266 47 0 chr1 96066934 96067062 -146597291 + FLAM_A SINE Alu 2 135 -7 446 107 0 13 chr1 96067062 96067137 -146597216 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 284 140 18 35 chr1 96067137 96067194 -146597159 + GA-rich Low_complexity Low_complexity 3 58 0 424 158 13 0 chr1 96067303 96067379 -146596974 + MER112 DNA MER1_type 8 84 -176 315 92 81 6 chr1 96067459 96067516 -146596837 - MLT2B3 LTR ERVL 0 554 462 344 143 14 0 chr1 96067518 96067588 -146596765 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 2880 146 62 29 chr1 96067588 96068073 -146596280 - MLT2B3 LTR ERVL -20 534 34 381 360 34 7 chr1 96068359 96068506 -146595847 - L2 LINE L2 -1 3271 3121 882 174 71 11 chr1 96069162 96069346 -146595007 - Charlie2a DNA MER1_type -1199 1663 1469 510 83 0 0 chr1 96069389 96069461 -146594892 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 227 260 198 0 chr1 96069472 96069568 -146594785 - Charlie2b DNA MER1_type -2112 670 556 684 257 151 15 chr1 96069569 96069841 -146594512 - Charlie2b DNA MER1_type -2553 309 1 1553 97 27 66 chr1 96070127 96070386 -146593967 - L1MA4 LINE L1 -5 6295 6047 193 179 0 51 chr1 96070826 96070865 -146593488 - L2 LINE L2 -81 3191 3155 223 352 62 47 chr1 96073105 96073233 -146591120 + MIR SINE MIR 20 149 -59 239 314 57 19 chr1 96073596 96073701 -146590652 + L2 LINE L2 3183 3291 -22 255 298 161 31 chr1 96073775 96073936 -146590417 + MIR SINE MIR 10 191 -71 1604 205 33 0 chr1 96074451 96074753 -146589600 - AluJb SINE Alu 0 312 1 1264 113 0 0 chr1 96074795 96074955 -146589398 + AluSg/x SINE Alu 136 295 -15 441 279 144 67 chr1 96074973 96075124 -146589229 - L3 LINE CR1 -522 1055 917 2176 130 13 0 chr1 96075124 96075424 -146588929 - AluSx SINE Alu -8 304 1 441 279 144 67 chr1 96075424 96075648 -146588705 - L3 LINE CR1 -660 917 651 212 313 0 60 chr1 96075768 96075851 -146588502 + L2 LINE L2 3147 3224 -48 292 352 41 14 chr1 96076792 96076936 -146587417 - MIR SINE MIR -65 143 2 263 260 52 13 chr1 96076936 96077012 -146587341 - L2 LINE L2 -5 3267 3189 509 275 135 15 chr1 96077076 96077276 -146587077 + MIR SINE MIR 5 228 -34 252 282 29 29 chr1 96077754 96077857 -146586496 + MIR SINE MIR 64 166 -96 485 273 74 0 chr1 96077888 96078009 -146586344 + MIR SINE MIR 44 173 -89 732 264 125 61 chr1 96078021 96078582 -146585771 - L1MC4 LINE L1 0 8042 7446 679 301 68 52 chr1 96078582 96079005 -146585348 + L1MB2 LINE L1 173 746 -5557 1963 111 7 52 chr1 96079099 96079406 -146584947 + AluSq SINE Alu 1 293 -20 2972 207 70 34 chr1 96079467 96079654 -146584699 + L1MB2 LINE L1 803 982 -5333 306 0 0 0 chr1 96079654 96079688 -146584665 + (CA)n Simple_repeat Simple_repeat 2 35 0 2972 207 70 34 chr1 96079688 96080404 -146583949 + L1MB2 LINE L1 982 1612 -4703 1619 166 19 45 chr1 96080404 96080717 -146583636 + AluJb SINE Alu 1 305 -7 2972 207 70 34 chr1 96080717 96080913 -146583440 + L1MB2 LINE L1 1612 1799 -4516 4449 225 30 83 chr1 96080940 96081211 -146583142 + L1MB2 LINE L1 2551 2835 -3547 2277 71 21 0 chr1 96081211 96081491 -146582862 + AluY SINE Alu 17 302 -9 4449 225 30 83 chr1 96081491 96082525 -146581828 + L1MB2 LINE L1 2835 3842 -2540 483 123 0 25 chr1 96082525 96082606 -146581747 - AluSc SINE Alu -3 306 228 4449 225 30 83 chr1 96082606 96082824 -146581529 + L1MB2 LINE L1 3842 4070 -2312 5100 186 11 67 chr1 96083451 96084668 -146579685 + L1MB2 LINE L1 4057 5205 -1177 1403 99 31 0 chr1 96084668 96084859 -146579494 + MSTB LTR MaLR 1 197 -229 1170 84 0 0 chr1 96084859 96085002 -146579351 + AluY SINE Alu 156 298 -13 1313 144 48 22 chr1 96085006 96085235 -146579118 + MSTB LTR MaLR 192 426 0 4867 191 17 10 chr1 96085237 96086432 -146577921 + L1MB2 LINE L1 5203 6407 0 298 301 36 0 chr1 96086429 96086512 -146577841 - L1MC4 LINE L1 -576 7466 7381 * 510 176 51 11 chr1 96087408 96087540 -146576813 + MIR SINE MIR 76 212 -50 1551 162 4 8 chr1 96087620 96087873 -146576480 - AluJb SINE Alu -47 265 14 2260 95 26 3 chr1 96088426 96088731 -146575622 + AluSx SINE Alu 1 312 0 957 155 107 19 chr1 96088827 96089033 -146575320 + L1ME1 LINE L1 5126 5349 -797 293 214 0 12 chr1 96089035 96089119 -146575234 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 1875 206 27 50 chr1 96089126 96089374 -146574979 + L1ME1 LINE L1 5357 5592 -574 1917 164 0 0 chr1 96089374 96089666 -146574687 + AluSx SINE Alu 1 292 -20 1875 206 27 50 chr1 96089666 96089859 -146574494 + L1ME1 LINE L1 5592 5788 -378 317 250 0 0 chr1 96089891 96089967 -146574386 + L1MA10 LINE L1 6240 6315 -19 * 788 168 143 93 chr1 96089959 96090239 -146574114 + L1ME1 LINE L1 5778 6071 -95 960 179 17 6 chr1 96090259 96090438 -146573915 - L1MC1 LINE L1 0 6333 6153 564 185 0 42 chr1 96090438 96090552 -146573801 + L1MA10 LINE L1 6219 6332 -2 279 53 70 18 chr1 96091748 96091805 -146572548 + CT-rich Low_complexity Low_complexity 3 62 0 1971 119 3 14 chr1 96091867 96092184 -146572169 + AluSq SINE Alu 1 314 0 2045 117 7 0 chr1 96092196 96092478 -146571875 + AluSq SINE Alu 1 284 -29 1994 118 14 0 chr1 96092898 96093186 -146571167 + AluSx SINE Alu 1 292 -20 955 235 96 48 chr1 96093201 96093640 -146570713 + LTR37B LTR ERV1 9 468 0 1377 236 36 12 chr1 96093701 96094031 -146570322 - LTR16C LTR ERVL 0 491 154 2306 99 7 0 chr1 96094275 96094568 -146569785 - AluSp SINE Alu -18 295 1 2102 114 0 3 chr1 96094950 96095239 -146569114 + AluSq SINE Alu 1 288 -25 482 44 113 0 chr1 96095239 96095448 -146568905 + (TA)n Simple_repeat Simple_repeat 1 232 0 517 69 44 66 chr1 96095450 96095817 -146568536 + (TATAA)n Simple_repeat Simple_repeat 1 358 0 372 69 106 6 chr1 96095793 96095953 -146568400 + (TA)n Simple_repeat Simple_repeat 2 177 0 * 2387 87 0 0 chr1 96095981 96096280 -146568073 + AluSc SINE Alu 1 299 -10 1010 111 111 0 chr1 96096280 96096424 -146567929 + AluSg/x SINE Alu 134 293 -19 710 108 144 18 chr1 96096459 96096570 -146567783 + AluSg/x SINE Alu 176 300 -12 207 267 0 0 chr1 96097312 96097387 -146566966 + CT-rich Low_complexity Low_complexity 2 76 0 321 335 102 51 chr1 96097705 96098181 -146566172 + L2 LINE L2 2552 3081 -191 353 298 65 16 chr1 96098726 96098850 -146565503 + L2 LINE L2 3179 3308 -5 539 199 87 181 chr1 96098854 96098942 -146565411 - MIR SINE MIR -4 258 163 2215 99 0 3 chr1 96098942 96099235 -146565118 - AluSg1 SINE Alu -16 293 2 539 199 87 181 chr1 96099235 96099412 -146564941 - MIR SINE MIR -99 163 18 4731 103 178 0 chr1 96099563 96100264 -146564089 - LTR12 LTR ERV1 0 826 1 5008 83 0 2 chr1 96100267 96100908 -146563445 - HERV9 LTR ERV1 -4 8395 7756 2342 177 132 56 chr1 96100902 96101721 -146562632 - Harlequin LTR ERV1 -5176 1720 840 * 24737 78 3 3 chr1 96101714 96104877 -146559476 - Harlequin LTR ERV1 -3445 4954 1792 2759 92 128 130 chr1 96104877 96105728 -146558625 + pTR5 LTR ERV1 1 714 0 * 3356 103 0 21 chr1 96105728 96106204 -146558149 - Harlequin LTR ERV1 -6954 1445 980 276 207 0 35 chr1 96106309 96106367 -146557986 + MLT1A1 LTR MaLR 310 365 0 404 263 0 102 chr1 96106730 96106867 -146557486 - L2 LINE L2 -27 3286 3164 2244 124 0 0 chr1 96106913 96107220 -146557133 + AluSg SINE Alu 1 307 -3 1026 184 0 24 chr1 96107232 96107400 -146556953 + FRAM SINE Alu 1 164 -2 2276 106 0 13 chr1 96107403 96107715 -146556638 + AluSg SINE Alu 1 308 -2 217 151 38 0 chr1 96107770 96107823 -146556530 + CT-rich Low_complexity Low_complexity 4 58 0 2208 119 10 7 chr1 96107940 96108250 -146556103 + AluSx SINE Alu 1 311 -1 2757 201 50 34 chr1 96108282 96109046 -146555307 + L1MC4 LINE L1 6441 7280 -608 2415 161 89 40 chr1 96109055 96109528 -146554825 + MLT1D LTR MaLR 9 504 -1 846 188 73 153 chr1 96109529 96109992 -146554361 + L1MC4 LINE L1 7304 7729 -313 329 220 53 0 chr1 96109993 96110077 -146554276 + L1MC4 LINE L1 7688 8042 0 2582 47 0 7 chr1 96110767 96111068 -146553285 + AluY SINE Alu 1 299 -12 204 257 300 0 chr1 96111097 96111167 -146553186 + MIR SINE MIR 117 207 -55 304 140 0 0 chr1 96111167 96111217 -146553136 - Alu SINE Alu 0 302 253 198 242 0 91 chr1 96111218 96111284 -146553069 + MIR SINE MIR 203 262 0 * 318 338 70 0 chr1 96111274 96111431 -146552922 - MIR SINE MIR -3 259 92 257 235 184 41 chr1 96111428 96111526 -146552827 - L2 LINE L2 -17 3255 3144 * 222 306 28 14 chr1 96111523 96111595 -146552758 - MIR SINE MIR -170 92 20 * 2269 101 0 0 chr1 96111629 96111916 -146552437 + AluSc SINE Alu 1 287 -22 284 289 237 11 chr1 96111919 96112109 -146552244 - MIR SINE MIR -10 252 20 2257 103 3 3 chr1 96112282 96112584 -146551769 - AluSp SINE Alu -11 302 1 249 188 142 114 chr1 96112608 96112784 -146551569 - MLT1K LTR MaLR -32 556 376 427 200 0 0 chr1 96112836 96112916 -146551437 - MLT1K LTR MaLR -317 271 192 31 44 0 0 chr1 96113336 96113381 -146550972 + AT_rich Low_complexity Low_complexity 1 45 0 337 279 131 16 chr1 96113737 96113859 -146550494 + L2 LINE L2 3137 3272 0 246 265 0 0 chr1 96114193 96114261 -146550092 - LTR33 LTR ERVL -29 492 425 2524 86 0 0 chr1 96114281 96114594 -146549759 - AluSq SINE Alu 0 313 1 524 284 82 10 chr1 96114625 96114969 -146549384 - LTR33 LTR ERVL -113 408 9 2141 87 42 7 chr1 96115072 96115359 -146548994 + AluY SINE Alu 1 297 -14 2332 102 0 0 chr1 96115404 96115709 -146548644 + AluSc SINE Alu 1 305 -4 595 257 0 40 chr1 96115800 96115952 -146548401 - MIR3 SINE MIR -39 169 24 536 261 140 24 chr1 96116042 96116249 -146548104 + MIR SINE MIR 32 262 0 861 271 89 16 chr1 96116400 96116765 -146547588 + MLT1K LTR MaLR 70 461 -127 846 221 0 31 chr1 96116765 96116960 -146547393 - MER58A DNA MER1_type 0 224 36 392 256 8 8 chr1 96116983 96117100 -146547253 + MLT1K LTR MaLR 464 580 -8 2264 113 0 0 chr1 96117204 96117504 -146546849 + AluSq SINE Alu 1 300 -13 851 100 31 23 chr1 96118382 96118512 -146545841 + FLAM_C SINE Alu 1 131 -2 32 57 0 0 chr1 96118520 96118573 -146545780 + AT_rich Low_complexity Low_complexity 1 53 0 2339 62 0 17 chr1 96118581 96118716 -146545637 + AluY SINE Alu 1 137 -169 2432 67 0 3 chr1 96118716 96119014 -146545339 + AluY SINE Alu 1 297 -14 2339 62 0 17 chr1 96119014 96119189 -146545164 + AluY SINE Alu 137 306 0 498 314 8 0 chr1 96119189 96119313 -146545040 - L2 LINE L2 -9 3263 3139 243 0 0 0 chr1 96119612 96119639 -146544714 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2296 79 3 0 chr1 96119639 96119924 -146544429 - AluSp SINE Alu -27 286 1 4823 105 18 65 chr1 96120079 96120896 -146543457 - MER4E LTR ERV1 0 779 1 2239 111 7 0 chr1 96121515 96121813 -146542540 + AluSx SINE Alu 1 300 -12 211 273 174 87 chr1 96122170 96122342 -146542011 - L2 LINE L2 -1160 2154 1998 2250 116 0 3 chr1 96122342 96122652 -146541701 + AluSq SINE Alu 1 309 -4 211 273 174 87 chr1 96122652 96122790 -146541563 - L2 LINE L2 -1316 1998 1817 277 337 41 52 chr1 96123523 96123695 -146540658 - MIR SINE MIR -71 191 22 2259 103 0 0 chr1 96123954 96124245 -146540108 - AluSg SINE Alu -19 291 1 2146 103 9 100 chr1 96124461 96124556 -146539797 + MLT1B LTR MaLR 10 112 -278 2077 113 0 0 chr1 96124556 96124855 -146539498 - AluSc SINE Alu 0 303 5 2146 103 9 100 chr1 96124855 96125177 -146539176 + MLT1B LTR MaLR 112 390 0 469 300 153 17 chr1 96125185 96125485 -146538868 + L2 LINE L2 1875 2215 -1099 266 316 83 8 chr1 96125817 96125950 -146538403 + L2 LINE L2 2232 2374 -940 580 273 63 81 chr1 96126040 96126247 -146538106 + MER102a DNA MER1_type 2 202 -1215 2213 119 6 3 chr1 96126247 96126558 -146537795 - AluSx SINE Alu 0 312 1 580 273 63 81 chr1 96126558 96126683 -146537670 + MER102a DNA MER1_type 202 328 -2 288 252 268 0 chr1 96126720 96126843 -146537510 + L2 LINE L2 2570 2725 -589 2485 55 0 7 chr1 96126919 96127227 -146537126 - AluY SINE Alu -5 306 1 490 326 12 17 chr1 96127227 96127399 -146536954 + MER5A DNA MER1_type 19 189 0 730 99 0 0 chr1 96128068 96128179 -146536174 + AluSp/q SINE Alu 201 311 -2 241 396 61 6 chr1 96128296 96128460 -146535893 - L3 LINE CR1 -1125 452 280 2624 130 19 28 chr1 96128755 96128990 -146535363 - MSTA LTR MaLR 0 428 197 1668 171 3 10 chr1 96128990 96129289 -146535064 - AluJb SINE Alu -15 297 1 2624 130 19 28 chr1 96129289 96129485 -146534868 - MSTA LTR MaLR -231 197 1 2079 153 44 62 chr1 96129610 96130060 -146534293 - MLT2C2 LTR ERVL -6 458 17 2227 84 10 7 chr1 96130269 96130565 -146533788 - AluSq SINE Alu -16 297 1 25 31 0 0 chr1 96130761 96130793 -146533560 + AT_rich Low_complexity Low_complexity 1 32 0 728 224 88 53 chr1 96130833 96131252 -146533101 + MLT1G1 LTR MaLR 10 545 -50 1845 137 4 11 chr1 96131253 96131530 -146532823 - AluJo SINE Alu -25 287 13 886 143 44 74 chr1 96131552 96131679 -146532674 + MER30 DNA MER1_type 1 121 -109 2392 71 13 23 chr1 96131679 96131988 -146532365 + AluY SINE Alu 1 306 -5 886 143 44 74 chr1 96131988 96132063 -146532290 + MER30 DNA MER1_type 121 197 -33 2199 106 0 0 chr1 96132079 96132389 -146531964 - AluSq SINE Alu 0 310 1 264 190 17 0 chr1 96132395 96132453 -146531900 + MLT1G1 LTR MaLR 537 595 0 2118 120 0 20 chr1 96132623 96132924 -146531429 + AluSx SINE Alu 5 299 -13 2193 91 34 0 chr1 96133540 96133837 -146530516 + AluSg SINE Alu 1 307 -3 1515 110 86 47 chr1 96133848 96133967 -146530386 + L1MA2 LINE L1 5992 6105 -199 2297 62 14 0 chr1 96133967 96134255 -146530098 - AluY SINE Alu -19 292 1 1515 110 86 47 chr1 96134255 96134436 -146529917 + L1MA2 LINE L1 6105 6304 0 479 304 68 85 chr1 96134676 96135074 -146529279 + L2 LINE L2 2824 3214 -58 2517 151 99 19 chr1 96135251 96135794 -146528559 + L1MB8 LINE L1 5505 6106 -72 1188 137 113 0 chr1 96135794 96136006 -146528347 + MER46A DNA MER2_type 1 236 0 2517 151 99 19 chr1 96136006 96136086 -146528267 + L1MB8 LINE L1 6106 6178 0 2434 89 0 0 chr1 96136089 96136393 -146527960 + AluSq SINE Alu 1 304 -9 2111 205 95 5 chr1 96136428 96136988 -146527365 + MER82 DNA MER2_type 37 646 -7 25 31 0 0 chr1 96138440 96138472 -146525881 + AT_rich Low_complexity Low_complexity 1 32 0 2172 85 7 3 chr1 96138533 96138816 -146525537 + AluSp SINE Alu 1 284 -29 201 94 0 0 chr1 96138816 96138848 -146525505 + (CATA)n Simple_repeat Simple_repeat 2 33 0 231 36 0 0 chr1 96140394 96140422 -146523931 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 705 158 58 0 chr1 96140422 96140542 -146523811 - AluJb SINE Alu -30 282 156 2193 88 17 7 chr1 96141230 96141525 -146522828 - AluSq SINE Alu -15 298 1 27 49 0 0 chr1 96141585 96141626 -146522727 + AT_rich Low_complexity Low_complexity 1 41 0 305 253 13 0 chr1 96141653 96141732 -146522621 + L1MB2 LINE L1 3718 3797 -2349 350 154 81 0 chr1 96141733 96141802 -146522551 + L1MC2 LINE L1 5228 5309 -880 252 0 0 0 chr1 96141802 96141830 -146522523 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 350 154 81 0 chr1 96141830 96141858 -146522495 + L1MC2 LINE L1 5309 5333 -856 * 3962 162 66 29 chr1 96141842 96142501 -146521852 + L1MB2 LINE L1 5106 5739 -432 1698 188 3 10 chr1 96142501 96142809 -146521544 + AluJo SINE Alu 1 306 -6 348 43 0 0 chr1 96142809 96142855 -146521498 + (TG)n Simple_repeat Simple_repeat 2 47 0 3962 162 66 29 chr1 96142855 96143227 -146521126 + L1MB2 LINE L1 5738 6171 0 2238 161 35 25 chr1 96143215 96143794 -146520559 + L1MC2 LINE L1 5312 5972 -372 * 1957 122 3 21 chr1 96143794 96144119 -146520234 + AluSx SINE Alu 1 320 0 2238 161 35 25 chr1 96144119 96144488 -146519865 + L1MC2 LINE L1 5972 6336 -8 237 61 0 0 chr1 96144523 96144556 -146519797 - L1MA4A LINE L1 -11 6292 6260 22 70 0 0 chr1 96144562 96144605 -146519748 + AT_rich Low_complexity Low_complexity 1 43 0 212 158 0 26 chr1 96145140 96145178 -146519175 + GA-rich Low_complexity Low_complexity 6 42 0 474 263 108 61 chr1 96145560 96145857 -146518496 + L1ME LINE L1 5355 5662 -459 272 91 23 0 chr1 96146284 96146328 -146518025 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 2094 93 0 77 chr1 96146330 96146653 -146517700 - AluSc SINE Alu -2 307 10 2390 54 0 7 chr1 96147213 96147508 -146516845 - AluY SINE Alu -18 293 1 1677 157 40 11 chr1 96148596 96148947 -146515406 - Looper DNA T2_type 0 1558 1198 2244 87 0 39 chr1 96148947 96149259 -146515094 - AluSp SINE Alu -2 311 12 1539 104 35 62 chr1 96149263 96149350 -146515003 + AluSx SINE Alu 52 140 -172 2109 57 14 25 chr1 96149350 96149698 -146514655 + AluY SINE Alu 1 345 0 1539 104 35 62 chr1 96149698 96149867 -146514486 + AluSx SINE Alu 140 303 -9 682 154 47 13 chr1 96149868 96150017 -146514336 - Looper DNA T2_type -744 814 661 522 229 102 12 chr1 96150021 96150158 -146514195 + MER3 DNA MER1_type 6 162 -47 2322 112 0 3 chr1 96150158 96150461 -146513892 + AluSp SINE Alu 1 302 -11 522 229 102 12 chr1 96150461 96150489 -146513864 + MER3 DNA MER1_type 162 186 -23 822 142 53 30 chr1 96150501 96150670 -146513683 - Looper DNA T2_type -889 669 497 993 99 0 0 chr1 96150727 96150858 -146513495 - AluSg SINE Alu -179 131 1 2249 107 0 22 chr1 96151541 96151860 -146512493 + AluSx SINE Alu 1 312 0 191 376 40 69 chr1 96152158 96152331 -146512022 - L2 LINE L2 -3 3269 3102 353 363 102 23 chr1 96152558 96153001 -146511352 - L2 LINE L2 -530 2784 2307 304 255 245 20 chr1 96153017 96153119 -146511234 + MER5A DNA MER1_type 57 181 -8 * 307 312 101 28 chr1 96153112 96153439 -146510914 - L2 LINE L2 -977 2337 1987 210 203 17 68 chr1 96153702 96153761 -146510592 + L2 LINE L2 3256 3311 -2 382 145 34 128 chr1 96153779 96153896 -146510457 - MIR SINE MIR -33 229 124 1013 161 60 27 chr1 96154001 96154248 -146510105 - Tigger4(Zombi) DNA MER2_type 0 2731 1 975 240 23 0 chr1 96154301 96154518 -146509835 + MER58A DNA MER1_type 1 222 -2 2181 106 13 7 chr1 96154989 96155290 -146509063 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr1 96155502 96155523 -146508830 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 96155891 96155911 -146508442 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2359 68 0 36 chr1 96156725 96157034 -146507319 - AluSg SINE Alu -12 298 1 26 50 0 0 chr1 96157349 96157389 -146506964 + AT_rich Low_complexity Low_complexity 1 40 0 198 0 0 0 chr1 96158221 96158243 -146506110 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2274 86 0 52 chr1 96158541 96158865 -146505488 + AluSc SINE Alu 1 307 -2 3493 155 75 25 chr1 96158981 96159433 -146504920 + L1MB3 LINE L1 5372 5879 -304 2193 107 7 3 chr1 96159433 96159733 -146504620 + AluSq SINE Alu 1 301 -12 3493 155 75 25 chr1 96159733 96160040 -146504313 + L1MB3 LINE L1 5879 6169 -14 209 338 42 14 chr1 96160528 96160599 -146503754 + L2 LINE L2 3009 3081 -191 459 125 0 0 chr1 96160927 96160999 -146503354 + (CA)n Simple_repeat Simple_repeat 1 72 0 328 166 0 41 chr1 96161756 96161842 -146502511 + Tigger4(Zombi) DNA MER2_type 1 2731 0 207 179 26 0 chr1 96162095 96162134 -146502219 + (CCA)n Simple_repeat Simple_repeat 3 42 0 378 321 107 18 chr1 96162299 96162467 -146501886 + MIR SINE MIR 1 183 -79 768 270 0 6 chr1 96162712 96162886 -146501467 + MER5B DNA MER1_type 6 178 0 2254 98 3 10 chr1 96164568 96164874 -146499479 + AluSx SINE Alu 1 304 -8 826 143 8 0 chr1 96165040 96165159 -146499194 - FLAM_C SINE Alu -19 124 5 1915 86 66 4 chr1 96165263 96165519 -146498834 - AluSx SINE Alu -23 289 18 2133 131 0 13 chr1 96165903 96166217 -146498136 + AluSg SINE Alu 1 310 0 368 342 152 19 chr1 96166339 96166807 -146497546 + L2 LINE L2 2430 2959 -355 1665 153 3 68 chr1 96167078 96167399 -146496954 - AluJb SINE Alu -12 300 1 2338 106 3 0 chr1 96167636 96167938 -146496415 - AluSp SINE Alu -10 303 1 27 0 0 0 chr1 96168229 96168256 -146496097 + AT_rich Low_complexity Low_complexity 1 27 0 476 237 150 23 chr1 96168323 96168496 -146495857 + MIR SINE MIR 68 262 0 2117 98 3 30 chr1 96168522 96168827 -146495526 - AluY SINE Alu -14 297 1 200 306 93 19 chr1 96169506 96169614 -146494739 - MIR SINE MIR -51 211 96 * 606 299 86 18 chr1 96169590 96169811 -146494542 + MIR SINE MIR 6 241 -21 1911 94 10 56 chr1 96169916 96170249 -146494104 + AluSc SINE Alu 5 324 0 23 33 0 0 chr1 96170923 96170953 -146493400 + AT_rich Low_complexity Low_complexity 1 30 0 1613 204 10 0 chr1 96171149 96171478 -146492875 + AluJo SINE Alu 3 312 0 859 288 47 0 chr1 96172002 96172238 -146492115 - MIR SINE MIR -13 249 3 2086 88 0 49 chr1 96172535 96172841 -146491512 + AluSq SINE Alu 1 291 -22 233 327 204 0 chr1 96173269 96173382 -146490971 + L3 LINE CR1 463 598 -979 1970 80 76 4 chr1 96173613 96173876 -146490477 + AluSq SINE Alu 1 282 -31 1429 104 0 5 chr1 96175159 96175352 -146489001 - AluSg/x SINE Alu 0 310 119 9028 23 3 256 chr1 96175376 96177227 -146487126 - SVA Other Other -3 1383 2 258 125 0 0 chr1 96177232 96177280 -146487073 + (GGGAGA)n Simple_repeat Simple_repeat 1 48 0 1125 69 0 0 chr1 96177293 96177424 -146486929 - AluY SINE Alu -177 134 4 1377 148 0 0 chr1 96177494 96177696 -146486657 - AluJb SINE Alu -24 288 87 2044 94 54 0 chr1 96180191 96180468 -146483885 - AluSc SINE Alu -16 293 2 319 345 58 20 chr1 96180783 96180983 -146483370 + MIR3 SINE MIR 3 206 -56 408 301 138 51 chr1 96181395 96181787 -146482566 + L2 LINE L2 2078 2503 -811 198 333 60 17 chr1 96181943 96182060 -146482293 + L2 LINE L2 2933 3054 -218 694 218 34 105 chr1 96182337 96182576 -146481777 - MER58A DNA MER1_type -1 223 2 1143 207 143 102 chr1 96182918 96183484 -146480869 + MLT1G1 LTR MaLR 5 593 -2 335 341 53 0 chr1 96183718 96183850 -146480503 + MIR SINE MIR 122 260 -2 2159 127 3 10 chr1 96184291 96184599 -146479754 + AluSq SINE Alu 1 306 -7 544 286 107 19 chr1 96184943 96185149 -146479204 - MIR SINE MIR -37 225 2 1919 102 58 4 chr1 96186313 96186587 -146477766 + AluSg SINE Alu 1 289 -21 2412 81 0 0 chr1 96187013 96187311 -146477042 + AluSc SINE Alu 1 298 -11 308 356 12 74 chr1 96187559 96187882 -146476471 - L2 LINE L2 -4 3268 2966 372 312 163 47 chr1 96188113 96188374 -146475979 - L2 LINE L2 -556 2758 2456 1993 114 68 0 chr1 96188374 96188654 -146475699 - AluSx SINE Alu -13 299 1 372 312 163 47 chr1 96188654 96188693 -146475660 - L2 LINE L2 -858 2456 2423 237 345 155 7 chr1 96188773 96188921 -146475432 - L2 LINE L2 -706 2608 2439 977 270 105 36 chr1 96189003 96189480 -146474873 + MLT1H LTR MaLR 36 545 -4 183 156 0 0 chr1 96191264 96191296 -146473057 + GA-rich Low_complexity Low_complexity 3 34 0 2290 112 0 0 chr1 96193826 96194138 -146470215 + AluSx SINE Alu 1 312 0 534 221 15 30 chr1 96194139 96194270 -146470083 - MIR SINE MIR -119 143 15 24 0 0 0 chr1 96194828 96194852 -146469501 + AT_rich Low_complexity Low_complexity 1 24 0 423 251 23 41 chr1 96194883 96195054 -146469299 - L1MC4a LINE L1 -1916 5961 5794 467 299 104 40 chr1 96195096 96195536 -146468817 - L1MC4a LINE L1 -799 5416 5267 1630 104 127 19 chr1 96195536 96195834 -146468519 - AluSg1 SINE Alu 0 309 1 467 299 104 40 chr1 96195834 96196054 -146468299 - L1MC4a LINE L1 -948 5267 5062 538 250 88 19 chr1 96197339 96197499 -146466854 + L2 LINE L2 1454 1624 -1690 892 92 87 27 chr1 96197501 96197685 -146466668 + L1MA8 LINE L1 6097 6291 0 4907 251 99 31 chr1 96197690 96198031 -146466322 - L1MEc LINE L1 -3424 2791 2474 1307 203 116 46 chr1 96198031 96198401 -146465952 + MSTD LTR MaLR 1 396 0 4907 251 99 31 chr1 96198401 96199009 -146465344 - L1MEc LINE L1 -3741 2474 1908 249 33 0 0 chr1 96199009 96199039 -146465314 + (TG)n Simple_repeat Simple_repeat 1 30 0 4907 251 99 31 chr1 96199039 96199812 -146464541 - L1MEc LINE L1 -4307 1908 1189 1820 121 104 52 chr1 96199812 96199988 -146464365 - THE1B LTR MaLR 0 364 199 2420 81 0 0 chr1 96199988 96200284 -146464069 - AluY SINE Alu -14 297 2 1820 121 104 52 chr1 96200284 96200453 -146463900 - THE1B LTR MaLR -165 199 1 11715 80 22 3 chr1 96200453 96202003 -146462350 - THE1B-int LTR MaLR 0 1580 1 1910 134 87 29 chr1 96202003 96202347 -146462006 - THE1B LTR MaLR 0 364 1 4907 251 99 31 chr1 96202347 96203235 -146461118 - L1MEc LINE L1 -5025 1190 39 235 243 129 0 chr1 96205612 96205682 -146458671 - MIR SINE MIR -1 261 183 213 238 0 0 chr1 96206210 96206252 -146458101 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 718 215 0 0 chr1 96208532 96208662 -146455691 - FLAM_C SINE Alu -2 131 2 646 139 84 69 chr1 96208760 96208962 -146455391 + L1MA4A LINE L1 5874 6078 -225 257 209 121 11 chr1 96209460 96209551 -146454802 - MARNA DNA Mariner -91 495 395 32 57 0 0 chr1 96209584 96209637 -146454716 + AT_rich Low_complexity Low_complexity 1 53 0 2482 196 58 48 chr1 96209750 96211235 -146453118 - L1MCa LINE L1 -4854 1053 113 2347 85 0 3 chr1 96211235 96211542 -146452811 + AluY SINE Alu 1 306 -5 2482 196 58 48 chr1 96211542 96211630 -146452723 - L1MCa LINE L1 -5794 113 27 2047 153 0 3 chr1 96212045 96212353 -146452000 - AluSx SINE Alu -5 307 1 833 201 50 72 chr1 96212408 96212659 -146451694 - L1MD3 LINE L1 0 7995 6111 34 0 0 0 chr1 96212795 96212829 -146451524 + AT_rich Low_complexity Low_complexity 1 34 0 398 297 74 39 chr1 96213059 96213273 -146451080 - MIR SINE MIR -2 260 37 2196 98 0 29 chr1 96213407 96213713 -146450640 + AluSx SINE Alu 5 301 -11 25 0 0 0 chr1 96213952 96213977 -146450376 + AT_rich Low_complexity Low_complexity 1 25 0 494 228 188 7 chr1 96216132 96216281 -146448072 - MER5B DNA MER1_type -1 177 2 1636 182 7 32 chr1 96216671 96216979 -146447374 + AluJo SINE Alu 1 300 -12 1603 178 27 14 chr1 96217298 96217590 -146446763 + AluJo SINE Alu 1 296 -16 2256 95 0 10 chr1 96218079 96218384 -146445969 + AluSx SINE Alu 1 302 -10 192 329 128 20 chr1 96219411 96219560 -146444793 + L2 LINE L2 2365 2529 -785 1763 162 20 20 chr1 96220026 96220329 -146444024 + AluJb SINE Alu 3 305 -7 2211 102 10 3 chr1 96220333 96220626 -146443727 + AluSq SINE Alu 1 295 -18 2104 124 10 0 chr1 96220944 96221243 -146443110 - AluSx SINE Alu -10 302 1 298 310 146 13 chr1 96221946 96222104 -146442249 - MIR SINE MIR -12 250 72 859 161 0 0 chr1 96222376 96222506 -146441847 + FLAM_C SINE Alu 1 130 -3 304 285 76 42 chr1 96222858 96223002 -146441351 - MIR3 SINE MIR -9 199 51 416 100 100 0 chr1 96223516 96223576 -146440777 - LTR40b LTR ERVL 0 462 397 715 223 60 29 chr1 96223609 96223888 -146440465 - LTR40a LTR ERVL -144 318 1 24 0 0 0 chr1 96224106 96224130 -146440223 + AT_rich Low_complexity Low_complexity 1 24 0 183 231 0 0 chr1 96224409 96224448 -146439905 - L2 LINE L2 -301 2971 2933 775 223 18 18 chr1 96224873 96225039 -146439314 - FAM SINE Alu -7 168 3 2069 151 0 0 chr1 96225690 96225994 -146438359 - AluSx SINE Alu -4 308 5 21 0 0 0 chr1 96226010 96226031 -146438322 + AT_rich Low_complexity Low_complexity 1 21 0 809 149 0 0 chr1 96226054 96226175 -146438178 + AluSg/x SINE Alu 178 298 -14 562 239 65 7 chr1 96226229 96226367 -146437986 - MER3 DNA MER1_type -63 146 1 239 229 165 9 chr1 96226568 96226677 -146437676 + L1MC4 LINE L1 7127 7252 -790 875 252 62 111 chr1 96226686 96227431 -146436922 + L1MC4 LINE L1 7335 8042 0 12658 128 62 18 chr1 96227924 96228838 -146435515 - Tigger1 DNA MER2_type 0 2418 1546 2046 138 0 0 chr1 96228838 96229127 -146435226 - AluSx SINE Alu -23 289 1 12658 128 62 18 chr1 96229127 96230068 -146434285 - Tigger1 DNA MER2_type -872 1546 456 2198 98 3 23 chr1 96230068 96230375 -146433978 + AluSx SINE Alu 5 305 -7 12658 128 62 18 chr1 96230375 96230622 -146433731 - Tigger1 DNA MER2_type -1962 456 221 207 0 0 0 chr1 96230630 96230653 -146433700 + (A)n Simple_repeat Simple_repeat 1 23 0 2278 90 3 0 chr1 96230659 96230948 -146433405 + AluSg SINE Alu 1 290 -20 237 167 0 21 chr1 96230948 96230989 -146433364 - Tigger1 DNA MER2_type -2363 55 14 1207 144 0 6 chr1 96231465 96231645 -146432708 + AluJb SINE Alu 62 240 -72 303 176 0 0 chr1 96231659 96231710 -146432643 - L1ME3 LINE L1 -18 6144 6094 1084 126 307 20 chr1 96231852 96232106 -146432247 + MER1B DNA MER1_type 2 328 -11 1644 179 6 13 chr1 96232293 96232605 -146431748 + AluJo SINE Alu 1 310 -2 201 294 0 0 chr1 96232655 96232706 -146431647 + (TA)n Simple_repeat Simple_repeat 1 51 0 358 237 175 40 chr1 96233829 96234006 -146430347 - MIR SINE MIR -56 206 6 2175 104 10 13 chr1 96234373 96234681 -146429672 - AluSx SINE Alu -5 307 1 2687 148 16 30 chr1 96234705 96235144 -146429209 - Tigger2a DNA MER2_type 0 434 2 4906 245 81 24 chr1 96235233 96235965 -146428388 + L1M4 LINE L1 3546 4235 -1911 2232 96 0 0 chr1 96235965 96236247 -146428106 + AluSx SINE Alu 1 282 -30 4906 245 81 24 chr1 96236247 96237082 -146427271 + L1M4 LINE L1 4235 5202 -944 530 286 107 19 chr1 96237473 96237679 -146426674 + MIR SINE MIR 2 225 -37 2146 127 3 10 chr1 96238023 96238331 -146426022 - AluSq SINE Alu -7 306 1 330 341 53 0 chr1 96238772 96238904 -146425449 - MIR SINE MIR -2 260 122 1337 210 141 102 chr1 96239138 96239705 -146424648 - MLT1G1 LTR MaLR -2 593 5 751 210 33 119 chr1 96240047 96240290 -146424063 + MER58A DNA MER1_type 2 223 -1 187 333 60 17 chr1 96240567 96240684 -146423669 - L2 LINE L2 -218 3054 2933 371 296 140 54 chr1 96240840 96241232 -146423121 - L2 LINE L2 -811 2503 2078 314 347 56 20 chr1 96241644 96241844 -146422509 - MIR3 SINE MIR -57 205 3 2051 94 54 0 chr1 96242159 96242436 -146421917 + AluSc SINE Alu 2 293 -16 1400 144 0 0 chr1 96244932 96245134 -146419219 + AluJb SINE Alu 87 288 -24 2428 78 0 0 chr1 96245204 96245500 -146418853 + AluSc SINE Alu 4 299 -10 1019 110 110 0 chr1 96245500 96245645 -146418708 + AluSg/x SINE Alu 134 294 -18 710 108 144 18 chr1 96245680 96245791 -146418562 + AluSg/x SINE Alu 174 298 -12 207 267 0 0 chr1 96246533 96246608 -146417745 + CT-rich Low_complexity Low_complexity 2 76 0 331 329 102 51 chr1 96246924 96247400 -146416953 + L2 LINE L2 2552 3081 -191 353 298 65 16 chr1 96247943 96248067 -146416286 + L2 LINE L2 3179 3308 -5 539 199 87 181 chr1 96248071 96248159 -146416194 - MIR SINE MIR -4 258 163 2215 99 0 3 chr1 96248159 96248452 -146415901 - AluSg1 SINE Alu -16 293 2 539 199 87 181 chr1 96248452 96248629 -146415724 - MIR SINE MIR -99 163 18 4846 102 168 0 chr1 96248780 96249487 -146414866 - LTR12 LTR ERV1 0 826 1 5021 81 0 2 chr1 96249490 96250131 -146414222 - HERV9 LTR ERV1 -4 8395 7756 2326 178 132 56 chr1 96250125 96250944 -146413409 - HERV9 LTR ERV1 -5176 1720 840 * 24755 78 3 3 chr1 96250937 96254100 -146410253 - HERV9 LTR ERV1 -3445 4954 1792 2759 97 167 120 chr1 96254100 96254974 -146409379 + pTR5 LTR ERV1 1 714 0 * 10360 112 3 8 chr1 96254974 96256427 -146407926 - HERV9 LTR ERV1 -6954 1445 1 4300 91 255 1 chr1 96256427 96257086 -146407267 - LTR12 LTR ERV1 0 826 1 426 337 32 21 chr1 96257219 96257409 -146406944 - MLT1K LTR MaLR -3 585 394 2386 89 3 0 chr1 96257506 96257808 -146406545 + AluSp SINE Alu 1 303 -10 297 0 0 0 chr1 96257897 96257930 -146406423 + (TG)n Simple_repeat Simple_repeat 2 34 0 312 27 0 0 chr1 96257931 96257968 -146406385 + (GA)n Simple_repeat Simple_repeat 2 38 0 210 371 0 0 chr1 96258072 96258134 -146406219 - L3 LINE CR1 -8 1569 1508 186 351 26 0 chr1 96258225 96258302 -146406051 - L3 LINE CR1 -273 1304 1226 2112 108 42 0 chr1 96259150 96259436 -146404917 - AluSg SINE Alu -12 298 1 241 87 22 22 chr1 96259910 96259956 -146404397 + MADE1 DNA Mariner 1 46 -34 301 242 291 6 chr1 96259997 96260179 -146404174 - MIR SINE MIR -8 254 21 1028 176 0 21 chr1 96260269 96260457 -146403896 - AluJo SINE Alu -9 303 120 606 156 21 0 chr1 96260780 96260876 -146403477 - FLAM_A SINE Alu -35 107 10 27402 55 4 1 chr1 96260961 96264456 -146399897 + L1P LINE L1 9 3521 -2625 614 49 0 0 chr1 96264471 96264553 -146399800 + L1P LINE L1 3874 3955 -2191 * 2926 99 9 12 chr1 96264552 96264975 -146399378 - L1P LINE L1 -5541 605 184 15900 32 3 0 chr1 96264983 96267651 -146396702 + L1PA4 LINE L1 3479 6155 0 1545 152 61 96 chr1 96267706 96268015 -146396338 - MLT1A1 LTR MaLR 0 365 47 2146 106 0 3 chr1 96268015 96268333 -146396020 - AluSg SINE Alu 0 317 1 2200 112 0 0 chr1 96268342 96268629 -146395724 - AluY SINE Alu -24 287 1 1545 152 61 96 chr1 96268629 96268683 -146395670 - MLT1A1 LTR MaLR -326 39 4 231 114 0 0 chr1 96268945 96268980 -146395373 + (TG)n Simple_repeat Simple_repeat 2 36 0 535 258 86 0 chr1 96269043 96269194 -146395159 - MIR SINE MIR -97 165 2 325 261 151 0 chr1 96270820 96270939 -146393414 + L1ME4a LINE L1 5984 6120 -1 2224 124 0 0 chr1 96271568 96271866 -146392487 + AluSg SINE Alu 1 298 -12 672 284 7 83 chr1 96271896 96272174 -146392179 + MIR SINE MIR 6 262 0 1010 296 74 25 chr1 96272331 96272737 -146391616 - LTR33 LTR ERVL -5 516 91 629 179 0 18 chr1 96273322 96273434 -146390919 - FLAM_A SINE Alu -32 110 1 417 316 149 36 chr1 96273434 96274151 -146390202 - L2 LINE L2 -9 3263 2463 2162 153 11 32 chr1 96274325 96274698 -146389655 + MLT1A1 LTR MaLR 1 365 0 415 254 45 0 chr1 96274755 96274889 -146389464 + MER103 DNA DNA 15 154 -12 782 181 167 73 chr1 96274957 96275205 -146389148 + MER5C DNA MER1_type 3 283 -41 288 0 0 0 chr1 96275205 96275237 -146389116 + (CA)n Simple_repeat Simple_repeat 1 32 0 782 181 167 73 chr1 96275237 96275275 -146389078 + MER5C DNA MER1_type 283 316 -8 612 238 60 0 chr1 96275308 96275476 -146388877 - MER5B DNA MER1_type 0 178 1 437 305 30 24 chr1 96275571 96275735 -146388618 + MER5B DNA MER1_type 14 178 0 2386 98 0 0 chr1 96275823 96276128 -146388225 + AluSg SINE Alu 1 305 -5 4014 163 130 21 chr1 96276732 96276827 -146387526 + Charlie1 DNA MER1_type 1647 1730 -1031 1318 207 120 47 chr1 96276827 96277253 -146387100 + MSTB2 LTR MaLR 1 457 0 4014 163 130 21 chr1 96277253 96278162 -146386191 + Charlie1 DNA MER1_type 1730 2761 0 190 145 0 97 chr1 96278325 96278387 -146385966 + L2 LINE L2 2924 2979 -334 2342 64 0 0 chr1 96278425 96278706 -146385647 + AluY SINE Alu 29 309 -2 526 330 104 36 chr1 96279004 96279419 -146384934 - L3 LINE CR1 -14 1563 1121 196 187 0 206 chr1 96279607 96279667 -146384686 + MIR SINE MIR 160 190 -72 2335 82 7 0 chr1 96279667 96279960 -146384393 + AluY SINE Alu 1 295 -16 196 187 0 206 chr1 96279960 96280006 -146384347 + MIR SINE MIR 190 244 -18 234 296 11 34 chr1 96280016 96280104 -146384249 - L3 LINE CR1 -556 1021 936 280 127 18 0 chr1 96281008 96281063 -146383290 - L1MD3 LINE L1 -10 7985 7930 22 35 0 0 chr1 96281183 96281212 -146383141 + AT_rich Low_complexity Low_complexity 1 29 0 279 292 168 49 chr1 96281315 96281541 -146382812 + MIR SINE MIR 8 260 -2 360 176 0 0 chr1 96282041 96282109 -146382244 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 1472 218 66 58 chr1 96282958 96283457 -146380896 + MLT1D LTR MaLR 1 503 -2 2117 118 3 23 chr1 96283609 96283914 -146380439 - AluSg SINE Alu -11 299 1 299 270 191 7 chr1 96283914 96284066 -146380287 - LTR67 LTR ERVL -5 552 373 320 345 74 7 chr1 96284171 96284319 -146380034 + L2 LINE L2 2776 2933 -381 881 38 0 0 chr1 96284783 96284889 -146379464 + HERVK11 LTR ERVK 6662 6767 -1186 * 5605 47 13 0 chr1 96284874 96285552 -146378801 + HERVK11 LTR ERVK 6957 7643 -310 502 176 59 0 chr1 96285563 96285665 -146378688 - MER34C LTR ERV1 -318 267 160 453 217 24 72 chr1 96285668 96285834 -146378519 - LTR23-int LTR ERV1 -4133 990 833 948 233 72 11 chr1 96286009 96286288 -146378065 - L1 LINE L1 -867 5279 4984 23 0 0 0 chr1 96288051 96288074 -146376279 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr1 96288662 96288703 -146375650 + AT_rich Low_complexity Low_complexity 1 41 0 3512 145 57 73 chr1 96288741 96289568 -146374785 - L1MB5 LINE L1 -9 6165 5352 538 220 25 6 chr1 96289563 96289722 -146374631 - L1ME LINE L1 -3084 2996 2835 * 3610 199 87 29 chr1 96289712 96290845 -146373508 - L1ME LINE L1 -4031 2049 839 287 308 37 0 chr1 96292411 96292518 -146371835 - L1MC5 LINE L1 -58 7903 7793 231 61 0 0 chr1 96292806 96292839 -146371514 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2140 96 3 3 chr1 96292842 96293124 -146371229 - AluSq SINE Alu -31 282 1 22 0 0 0 chr1 96293331 96293353 -146371000 + AT_rich Low_complexity Low_complexity 1 22 0 2213 185 46 52 chr1 96294085 96294582 -146369771 + MLT1D LTR MaLR 9 502 -3 271 119 0 0 chr1 96295145 96295187 -146369166 - MER65B LTR ERV1 -489 42 1 2451 102 28 0 chr1 96295229 96295583 -146368770 + THE1B LTR MaLR 1 364 0 9907 105 46 31 chr1 96295583 96297140 -146367213 + THE1B-int LTR MaLR 1 1580 0 2456 91 5 57 chr1 96297140 96297524 -146366829 + THE1B LTR MaLR 1 364 0 1654 135 23 8 chr1 96298191 96298450 -146365903 + AluJo SINE Alu 1 263 -49 23 0 0 0 chr1 96298450 96298473 -146365880 + AT_rich Low_complexity Low_complexity 1 23 0 2049 119 14 0 chr1 96298648 96298977 -146365376 + AluSx SINE Alu 1 333 0 1167 119 72 37 chr1 96300701 96301033 -146363320 - MLT1B LTR MaLR 0 390 1 920 213 0 6 chr1 96301665 96301829 -146362524 - AluJb SINE Alu -18 294 132 427 156 26 0 chr1 96301978 96302055 -146362298 - AluJ/FLAM SINE Alu -233 79 1 277 304 44 7 chr1 96302459 96302594 -146361759 + L1MC4a LINE L1 5409 5548 -2260 268 290 43 0 chr1 96302888 96302981 -146361372 + L1MC4a LINE L1 5435 5531 -2277 187 242 0 97 chr1 96302991 96303053 -146361300 - L2 LINE L2 -64 3208 3153 878 288 48 17 chr1 96303398 96303752 -146360601 + L1MC4a LINE L1 5552 5916 -1892 413 339 36 0 chr1 96303832 96303944 -146360409 + L2 LINE L2 3150 3265 -7 435 194 46 37 chr1 96304202 96304310 -146360043 + L3 LINE CR1 1264 1372 -205 2177 113 3 7 chr1 96304459 96304768 -146359585 + AluSg SINE Alu 1 308 -2 528 274 142 5 chr1 96304772 96304969 -146359384 + MIR SINE MIR 36 259 -3 795 269 80 58 chr1 96305247 96305777 -146358576 - LTR50 LTR ERVL 0 523 1 2092 122 7 7 chr1 96307618 96307914 -146356439 - AluSx SINE Alu -16 296 1 379 275 40 13 chr1 96308980 96309129 -146355224 + L1M4 LINE L1 3743 3895 -2251 2217 91 16 3 chr1 96309451 96309758 -146354595 - AluSp SINE Alu -1 312 2 991 227 74 28 chr1 96309784 96310258 -146354095 - MER39 LTR ERV1 0 638 6 409 281 28 40 chr1 96310695 96310944 -146353409 - MER34B LTR ERV1 0 565 320 444 267 121 29 chr1 96312759 96313032 -146351321 - L2 LINE L2 0 3313 3016 22 0 0 0 chr1 96313100 96313122 -146351231 + AT_rich Low_complexity Low_complexity 1 22 0 2436 86 3 0 chr1 96313264 96313567 -146350786 + AluSp SINE Alu 1 304 -9 317 269 54 0 chr1 96313750 96313880 -146350473 + L1MEd LINE L1 697 833 -5286 23 101 0 0 chr1 96315199 96315278 -146349075 + AT_rich Low_complexity Low_complexity 1 79 0 611 310 77 41 chr1 96315517 96315856 -146348497 + L3 LINE CR1 1216 1566 -11 2071 121 0 0 chr1 96316232 96316522 -146347831 - AluSx SINE Alu -22 290 1 1866 166 27 18 chr1 96316688 96317025 -146347328 + MER2 DNA MER2_type 6 345 0 21 57 0 0 chr1 96317374 96317409 -146346944 + AT_rich Low_complexity Low_complexity 1 35 0 384 301 98 16 chr1 96318119 96318312 -146346041 + MIR SINE MIR 48 256 -6 323 371 41 6 chr1 96319313 96319483 -146344870 + L3 LINE CR1 1399 1574 -3 2176 106 10 0 chr1 96321375 96321668 -146342685 - AluSx SINE Alu -16 296 1 2061 227 84 53 chr1 96321668 96322704 -146341649 - L1ME LINE L1 -560 5606 4543 1687 77 0 0 chr1 96322804 96323012 -146341341 - AluSg1 SINE Alu -101 208 1 2124 128 0 0 chr1 96323862 96324151 -146340202 - AluJb SINE Alu -23 289 1 433 104 45 15 chr1 96325203 96325270 -146339083 + Tigger2 DNA MER2_type 1 69 -2649 * 1043 150 55 35 chr1 96325260 96325460 -146338893 + Tigger2 DNA MER2_type 2273 2476 -242 670 144 8 53 chr1 96325463 96325595 -146338758 + FLAM_A SINE Alu 1 126 -7 827 117 19 102 chr1 96325608 96325813 -146338540 + Tigger2 DNA MER2_type 2457 2644 -74 9898 64 14 0 chr1 96325813 96327198 -146337155 + L1P3 LINE L1 4064 5465 -707 1889 143 0 52 chr1 96328074 96328402 -146335951 - AluJb SINE Alu -1 311 1 2371 75 0 0 chr1 96328501 96328795 -146335558 + AluY SINE Alu 1 294 -17 2099 107 4 0 chr1 96328810 96329090 -146335263 + AluSp SINE Alu 11 291 -22 402 327 85 77 chr1 96331013 96331521 -146332832 + L1ME LINE L1 23 534 -5536 546 139 0 23 chr1 96331737 96331823 -146332530 - Tigger7 DNA MER2_type 0 2491 2408 1096 245 32 4 chr1 96331826 96332091 -146332262 - Tigger7 DNA MER2_type -459 274 1 514 206 116 16 chr1 96332931 96333092 -146331261 + MER5A DNA MER1_type 4 183 -6 2172 110 10 3 chr1 96333275 96333583 -146330770 - AluSp SINE Alu -3 310 1 23 0 0 0 chr1 96333588 96333611 -146330742 + AT_rich Low_complexity Low_complexity 1 23 0 1730 144 92 14 chr1 96333756 96334104 -146330249 + THE1C LTR MaLR 1 375 0 9345 126 15 56 chr1 96334106 96334530 -146329823 + THE1C-int LTR MaLR 3 443 -1137 2420 68 0 0 chr1 96334530 96334825 -146329528 + AluY SINE Alu 1 295 -16 9345 126 15 56 chr1 96334825 96336045 -146328308 + THE1C-int LTR MaLR 443 1579 -1 1637 117 58 96 chr1 96336045 96336421 -146327932 + THE1B LTR MaLR 3 364 0 549 276 13 32 chr1 96337085 96337241 -146327112 + L2 LINE L2 3161 3313 0 3298 180 34 24 chr1 96337401 96338156 -146326197 + L1MB3 LINE L1 5419 6181 -2 1911 150 31 0 chr1 96338188 96338482 -146325871 + AluJb SINE Alu 1 303 -9 22 35 0 0 chr1 96338595 96338624 -146325729 + AT_rich Low_complexity Low_complexity 1 29 0 1087 158 99 116 chr1 96339037 96339391 -146324962 - MER7A DNA MER2_type 0 346 1 1394 193 72 0 chr1 96340211 96340501 -146323852 - AluJo SINE Alu -1 311 1 29 28 0 0 chr1 96340561 96340597 -146323756 + AT_rich Low_complexity Low_complexity 1 36 0 1147 227 87 34 chr1 96342517 96342874 -146321479 - MER21B LTR ERV1 -51 812 437 1069 222 185 8 chr1 96343180 96343647 -146320706 + L1MC4 LINE L1 7261 7740 -68 1645 150 30 50 chr1 96343651 96343829 -146320524 - MER44D DNA MER2_type -1882 609 429 921 154 13 19 chr1 96343829 96343985 -146320368 + FRAM SINE Alu 1 155 -11 1645 150 30 50 chr1 96343985 96344145 -146320208 - MER44D DNA MER2_type -2062 429 8 282 29 0 0 chr1 96345019 96345054 -146319299 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 288 306 129 0 chr1 96345459 96345544 -146318809 + L2 LINE L2 3176 3271 -1 28 0 0 0 chr1 96345707 96345735 -146318618 + AT_rich Low_complexity Low_complexity 1 28 0 25 62 0 16 chr1 96345914 96345935 -146318418 + AT_rich Low_complexity Low_complexity 1 21 -42 1946 122 25 3 chr1 96345935 96346221 -146318132 + AluSx SINE Alu 1 292 -20 25 62 0 16 chr1 96346221 96346263 -146318090 + AT_rich Low_complexity Low_complexity 21 63 0 2418 77 3 0 chr1 96346488 96346786 -146317567 - AluSp SINE Alu -14 299 1 22 0 0 0 chr1 96346800 96346822 -146317531 + AT_rich Low_complexity Low_complexity 1 22 0 53 40 0 0 chr1 96346871 96346945 -146317408 + AT_rich Low_complexity Low_complexity 1 74 0 1452 171 69 4 chr1 96347925 96348199 -146316154 + AluJo SINE Alu 1 292 -20 5563 137 19 0 chr1 96348360 96349322 -146315031 + L1PB3 LINE L1 5171 6147 -7 21 36 0 0 chr1 96349322 96349350 -146315003 + AT_rich Low_complexity Low_complexity 1 28 0 537 118 10 49 chr1 96349435 96349537 -146314816 + AluS SINE Alu 1 98 -215 710 197 32 10 chr1 96349733 96349933 -146314420 - L1MDa LINE L1 -3893 2647 2552 208 163 0 23 chr1 96350344 96350387 -146313966 - MER5B DNA MER1_type -31 147 106 2054 141 0 0 chr1 96351673 96351963 -146312390 + AluJb SINE Alu 1 290 -22 497 211 168 19 chr1 96352579 96352740 -146311613 + MER5A DNA MER1_type 5 189 0 21 0 0 0 chr1 96353597 96353618 -146310735 + AT_rich Low_complexity Low_complexity 1 21 0 2046 212 122 23 chr1 96353818 96354576 -146309777 - L1MDa LINE L1 -5305 1235 18 1848 157 0 20 chr1 96354784 96355077 -146309276 - AluJo SINE Alu -25 287 1 346 206 43 65 chr1 96356568 96356660 -146307693 - Tigger2 DNA MER2_type 0 2718 2629 3786 52 8 2 chr1 96356686 96357166 -146307187 - L1PA7 LINE L1 -1 6153 5671 229 295 49 0 chr1 96357499 96357560 -146306793 + L2 LINE L2 3250 3313 0 22 0 0 0 chr1 96359221 96359243 -146305110 + AT_rich Low_complexity Low_complexity 1 22 0 2119 108 11 0 chr1 96359324 96359610 -146304743 - AluSq SINE Alu -5 308 20 431 265 175 26 chr1 96360258 96360447 -146303906 + L1MC4 LINE L1 7462 7678 -364 659 261 21 26 chr1 96360451 96360685 -146303668 + L1MC4 LINE L1 7810 8042 0 239 271 47 75 chr1 96361206 96361313 -146303040 - MER5A DNA MER1_type -77 112 9 971 300 135 14 chr1 96361408 96361912 -146302441 + L2 LINE L2 2752 3311 -2 1985 114 3 36 chr1 96363296 96363602 -146300751 - AluSx SINE Alu -16 296 1 1253 170 58 97 chr1 96363920 96364231 -146300122 + AluJo SINE Alu 1 299 -13 2782 179 24 6 chr1 96364665 96365156 -146299197 + L1 LINE L1 13 512 -7053 * 3439 213 52 3 chr1 96365128 96365894 -146298459 + L1 LINE L1 3808 4668 -2897 2078 74 55 4 chr1 96365894 96366165 -146298188 + AluSc SINE Alu 25 309 0 3439 213 52 3 chr1 96366165 96366322 -146298031 + L1 LINE L1 4668 4816 -2749 24 75 0 0 chr1 96367702 96367742 -146296611 + AT_rich Low_complexity Low_complexity 1 40 0 309 222 0 0 chr1 96368235 96368334 -146296019 + CT-rich Low_complexity Low_complexity 1 99 0 617 104 0 0 chr1 96368334 96368411 -146295942 - AluJ/FLAM SINE Alu -234 78 2 24 0 0 0 chr1 96368662 96368686 -146295667 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr1 96368771 96368796 -146295557 + AT_rich Low_complexity Low_complexity 1 25 0 1127 207 62 9 chr1 96369698 96369925 -146294428 + MER8 DNA MER2_type 1 239 0 22 35 0 0 chr1 96370429 96370458 -146293895 + AT_rich Low_complexity Low_complexity 1 29 0 573 314 15 10 chr1 96371383 96371587 -146292766 + MIR SINE MIR 31 235 -27 1756 217 56 29 chr1 96371845 96372288 -146292065 - L1ME1 LINE L1 -268 5898 5444 296 295 74 0 chr1 96373742 96373837 -146290516 - L2 LINE L2 -22 3291 3190 859 301 98 28 chr1 96374106 96374729 -146289624 + L2 LINE L2 2655 3313 0 23 0 0 0 chr1 96375644 96375667 -146288686 + AT_rich Low_complexity Low_complexity 1 23 0 181 305 29 57 chr1 96376618 96376723 -146287630 + L2 LINE L2 2653 2754 -560 356 347 70 84 chr1 96376876 96377219 -146287134 + L2 LINE L2 2935 3272 0 1006 264 25 16 chr1 96377859 96378101 -146286252 - MIR SINE MIR 0 262 19 4180 133 59 100 chr1 96379153 96379227 -146285126 - Charlie1 DNA MER1_type 0 2761 2685 225 0 0 0 chr1 96379227 96379252 -146285101 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4180 133 59 100 chr1 96379252 96380060 -146284293 - Charlie1 DNA MER1_type -76 2685 1922 1177 181 54 5 chr1 96380060 96380265 -146284088 - MER20 DNA MER1_type 0 219 5 4180 133 59 100 chr1 96380265 96380368 -146283985 - Charlie1 DNA MER1_type -839 1922 1816 2147 91 0 0 chr1 96380879 96381188 -146283165 - AluSc SINE Alu 0 313 5 1043 191 4 112 chr1 96382225 96382281 -146282072 + MER58A DNA MER1_type 1 61 -2359 2178 108 14 0 chr1 96382281 96382578 -146281775 - AluSx SINE Alu -11 301 1 1043 191 4 112 chr1 96382578 96382699 -146281654 + MER58A DNA MER1_type 61 193 -2227 2481 136 71 22 chr1 96382699 96383105 -146281248 - MSTB LTR MaLR 0 426 1 8391 164 64 52 chr1 96383105 96384156 -146280197 - MSTB-int LTR MaLR 0 1651 614 1532 173 99 0 chr1 96384156 96384428 -146279925 + AluJb SINE Alu 5 303 -9 8391 164 64 52 chr1 96384428 96384657 -146279696 - MSTB-int LTR MaLR -1037 614 389 2491 81 7 0 chr1 96384657 96384966 -146279387 - AluSx SINE Alu -1 311 1 8391 164 64 52 chr1 96384966 96385315 -146279038 - MSTB-int LTR MaLR -1262 389 1 2667 158 12 26 chr1 96385317 96385549 -146278804 - MSTB LTR MaLR -2 424 198 2180 101 3 3 chr1 96385549 96385858 -146278495 - AluSp SINE Alu 0 309 1 2667 158 12 26 chr1 96385858 96386054 -146278299 - MSTB LTR MaLR -228 198 1 1043 191 4 112 chr1 96386054 96386122 -146278231 + MER58A DNA MER1_type 193 224 0 377 258 12 114 chr1 96386190 96386357 -146277996 - MIR3 SINE MIR -11 197 48 21 0 0 0 chr1 96386434 96386455 -146277898 + AT_rich Low_complexity Low_complexity 1 21 0 193 233 0 23 chr1 96387197 96387240 -146277113 + L2 LINE L2 3201 3242 -71 651 213 31 25 chr1 96388948 96389108 -146275245 - MER58A DNA MER1_type -44 180 20 195 42 0 0 chr1 96389626 96389650 -146274703 + (TA)n Simple_repeat Simple_repeat 2 25 0 184 255 43 21 chr1 96391724 96391771 -146272582 + MIR3 SINE MIR 8 55 -153 230 163 0 41 chr1 96394434 96394483 -146269870 - L2 LINE L2 -16 3297 3251 223 275 184 0 chr1 96394548 96394657 -146269696 - MIR SINE MIR -26 236 108 619 225 148 30 chr1 96394775 96394944 -146269409 + MER5A DNA MER1_type 1 189 0 288 174 57 153 chr1 96394954 96395094 -146269259 - MIR SINE MIR -65 143 17 265 219 14 27 chr1 96395863 96395936 -146268417 - MIR SINE MIR -12 250 179 766 182 74 27 chr1 96395938 96396086 -146268267 - FRAM SINE Alu -21 155 1 668 240 82 0 chr1 96396086 96396257 -146268096 - MIR SINE MIR -70 192 8 809 104 0 0 chr1 96396318 96396424 -146267929 + AluSq/x SINE Alu 1 106 -207 1855 88 0 0 chr1 96396424 96396652 -146267701 + AluSx SINE Alu 63 290 -22 233 377 22 14 chr1 96398685 96398823 -146265530 + L2 LINE L2 2714 2852 -462 253 326 105 33 chr1 96399050 96399231 -146265122 + MIR SINE MIR 23 216 -46 205 276 35 35 chr1 96399396 96399483 -146264870 + MIR SINE MIR 71 157 -105 21 0 0 0 chr1 96400038 96400059 -146264294 + AT_rich Low_complexity Low_complexity 1 21 0 2350 102 0 0 chr1 96400251 96400546 -146263807 - AluSc SINE Alu -14 295 1 2140 111 0 19 chr1 96400548 96400855 -146263498 - AluSx SINE Alu -11 301 1 396 0 0 0 chr1 96401024 96401068 -146263285 + (TG)n Simple_repeat Simple_repeat 2 45 0 782 215 44 91 chr1 96401099 96401373 -146262980 + MLT1D LTR MaLR 12 272 -233 685 157 9 0 chr1 96401380 96401495 -146262858 + MLT1D LTR MaLR 387 502 -3 2159 98 7 7 chr1 96404745 96405042 -146259311 + AluSc SINE Alu 7 303 -6 210 71 0 0 chr1 96406190 96406218 -146258135 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1776 164 10 3 chr1 96406230 96406535 -146257818 - L1MB3 LINE L1 0 6183 5877 331 95 0 0 chr1 96406824 96406866 -146257487 - MER46A DNA MER2_type 0 236 195 1067 176 133 9 chr1 96406955 96407165 -146257188 - MER46A DNA MER2_type 0 236 1 2186 100 17 0 chr1 96407751 96408076 -146256277 - AluSp SINE Alu 0 313 12 22 65 0 0 chr1 96408268 96408299 -146256054 + AT_rich Low_complexity Low_complexity 1 31 0 2328 91 7 0 chr1 96408299 96408595 -146255758 - AluSq SINE Alu -15 298 1 417 312 82 0 chr1 96408633 96408803 -146255550 + MIR SINE MIR 10 193 -69 227 174 43 0 chr1 96408979 96409025 -146255328 - MER5B DNA MER1_type -4 174 127 24 32 0 0 chr1 96409712 96409743 -146254610 + AT_rich Low_complexity Low_complexity 1 31 0 497 254 107 23 chr1 96410174 96410351 -146254002 + MER91A DNA MER1_type 1 192 -4 379 353 68 24 chr1 96410456 96410751 -146253602 - L2 LINE L2 -55 3217 2910 336 294 129 18 chr1 96412657 96412820 -146251533 - MIR3 SINE MIR -12 196 16 205 398 28 0 chr1 96413586 96413694 -146250659 - MIR3 SINE MIR -1 207 97 247 315 43 11 chr1 96413868 96413960 -146250393 - MIR3 SINE MIR -110 98 4 552 257 76 33 chr1 96415610 96415820 -146248533 + MIR SINE MIR 43 261 -1 200 224 15 0 chr1 96417007 96417074 -146247279 + (TA)n Simple_repeat Simple_repeat 1 68 0 24 32 0 0 chr1 96418942 96418973 -146245380 + AT_rich Low_complexity Low_complexity 1 31 0 207 186 23 0 chr1 96419710 96419753 -146244600 + G-rich Low_complexity Low_complexity 4 47 0 2971 277 54 21 chr1 96420852 96421747 -146242606 - MER45C DNA AcHobo -22 931 8 201 182 0 0 chr1 96422228 96422261 -146242092 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 250 330 128 0 chr1 96422263 96422372 -146241981 - L2 LINE L2 -5 3308 3186 241 220 0 0 chr1 96424670 96424720 -146239633 + L1MCb LINE L1 375 424 -5621 246 128 0 0 chr1 96425522 96425561 -146238792 + (ATG)n Simple_repeat Simple_repeat 2 40 0 489 228 228 16 chr1 96425571 96425760 -146238593 - MIR SINE MIR -28 234 6 238 255 138 11 chr1 96425928 96426022 -146238331 - L2 LINE L2 -14 3299 3194 2323 202 26 67 chr1 96426138 96426708 -146237645 + MLT2B3 LTR ERVL 1 547 -7 686 213 30 6 chr1 96426714 96426878 -146237475 - MIR SINE MIR -34 228 61 3747 144 23 17 chr1 96427194 96427834 -146236519 - L1MA7 LINE L1 -53 6238 5595 230 150 25 0 chr1 96428021 96428061 -146236292 - MIR SINE MIR -61 147 107 318 167 0 0 chr1 96428666 96428726 -146235627 + CT-rich Low_complexity Low_complexity 4 63 0 1699 189 3 26 chr1 96428727 96429039 -146235314 - AluJo SINE Alu -7 305 1 180 77 0 0 chr1 96429149 96429175 -146235178 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 22 0 0 0 chr1 96432612 96432634 -146231719 + AT_rich Low_complexity Low_complexity 1 22 0 1048 171 11 0 chr1 96433079 96433266 -146231087 - MER53 DNA DNA 0 189 1 290 311 61 45 chr1 96434981 96435113 -146229240 - L2 LINE L2 0 3272 3139 226 211 0 39 chr1 96439110 96439162 -146225191 + LTR3 LTR ERVK 262 311 -121 24 32 0 0 chr1 96439333 96439364 -146224989 + AT_rich Low_complexity Low_complexity 1 31 0 251 180 60 0 chr1 96439522 96439572 -146224781 + L2 LINE L2 3261 3313 0 201 217 36 72 chr1 96440059 96440142 -146224211 + CT-rich Low_complexity Low_complexity 2 81 0 832 226 6 0 chr1 96440586 96440763 -146223590 - MIR SINE MIR -25 237 60 1405 282 14 21 chr1 96440790 96441219 -146223134 + LTR16A LTR ERVL 25 450 0 3567 274 87 17 chr1 96441219 96442379 -146221974 + HERV16 LTR ERVL 1 1241 -3755 809 308 38 31 chr1 96442432 96442859 -146221494 + ERVL LTR ERVL 3346 3814 -1923 1551 311 71 33 chr1 96442997 96444175 -146220178 + ERVL LTR ERVL 3837 5323 -441 479 339 56 53 chr1 96444434 96444753 -146219600 - L2 LINE L2 -5 3267 2948 242 358 24 0 chr1 96444795 96444918 -146219435 - L2 LINE L2 -466 2848 2723 256 325 25 0 chr1 96446857 96446937 -146217416 + MIR3 SINE MIR 116 197 -11 2586 157 60 61 chr1 96447526 96447903 -146216450 - MLT2B1 LTR ERVL 0 520 142 1511 203 3 7 chr1 96447903 96448213 -146216140 - AluJo SINE Alu 0 309 1 2586 157 60 61 chr1 96448213 96448355 -146215998 - MLT2B1 LTR ERVL -378 142 1 188 296 0 0 chr1 96448592 96448646 -146215707 + L2 LINE L2 3136 3189 -83 426 244 18 39 chr1 96448818 96448993 -146215360 - MIR SINE MIR -57 205 40 545 261 67 17 chr1 96451565 96451745 -146212608 + MER5A DNA MER1_type 1 189 0 189 324 88 37 chr1 96455800 96455936 -146208417 - L2 LINE L2 -226 3087 2945 312 318 9 9 chr1 96455938 96456048 -146208305 - MIR SINE MIR -11 251 142 898 182 35 52 chr1 96456060 96456291 -146208062 - MIR SINE MIR -8 254 28 227 261 15 0 chr1 96457097 96457162 -146207191 - MIR SINE MIR -120 142 77 2698 20 0 7 chr1 96457389 96457686 -146206667 + AluY SINE Alu 1 295 -16 235 303 136 30 chr1 96457829 96457961 -146206392 - L2 LINE L2 0 3272 3127 297 233 44 11 chr1 96458123 96458213 -146206140 - MIR SINE MIR -121 141 49 1367 207 153 37 chr1 96458309 96458715 -146205638 + MSTB2 LTR MaLR 4 456 -1 661 295 16 0 chr1 96460322 96460505 -146203848 - MIR SINE MIR -37 225 40 306 252 73 57 chr1 96460822 96460945 -146203408 + L2 LINE L2 3184 3308 -5 239 100 86 71 chr1 96464525 96464595 -146199758 - LTR67 LTR ERVL -10 547 477 234 45 68 0 chr1 96464747 96464791 -146199562 + CT-rich Low_complexity Low_complexity 5 51 0 268 193 0 18 chr1 96464910 96464967 -146199386 - MLT1K LTR MaLR -347 241 186 270 116 0 0 chr1 96466052 96466095 -146198258 + (CAA)n Simple_repeat Simple_repeat 3 45 0 446 240 41 25 chr1 96466413 96466534 -146197819 + L2 LINE L2 3191 3313 0 1238 189 50 53 chr1 96466635 96466916 -146197437 + AluJb SINE Alu 25 304 -8 639 315 131 55 chr1 96467044 96467728 -146196625 + L2 LINE L2 2486 3248 -24 1851 130 0 0 chr1 96467728 96467982 -146196371 - AluSx SINE Alu -20 292 39 639 315 131 55 chr1 96467982 96468010 -146196343 + L2 LINE L2 3248 3272 0 209 397 84 6 chr1 96468117 96468296 -146196057 + MIR SINE MIR 20 212 -50 248 365 10 0 chr1 96468328 96468432 -146195921 - MIR3 SINE MIR -18 190 86 191 272 168 40 chr1 96468463 96468588 -146195765 - MIR SINE MIR 0 262 122 228 275 14 14 chr1 96469137 96469206 -146195147 + CT-rich Low_complexity Low_complexity 3 71 0 518 250 116 62 chr1 96469575 96469799 -146194554 - MIR SINE MIR -25 237 2 2233 112 0 3 chr1 96469846 96470151 -146194202 + AluSx SINE Alu 1 304 -8 28 48 0 0 chr1 96471304 96471346 -146193007 + AT_rich Low_complexity Low_complexity 1 42 0 388 269 104 8 chr1 96471643 96471777 -146192576 + L2 LINE L2 3167 3313 0 478 244 177 74 chr1 96471798 96472069 -146192284 + L2 LINE L2 2920 3218 -95 332 209 35 58 chr1 96472281 96472367 -146191986 + L2 LINE L2 3230 3313 0 902 246 133 70 chr1 96472870 96473334 -146191019 + MLT1H LTR MaLR 4 545 -4 327 333 122 0 chr1 96473336 96473483 -146190870 + MIR SINE MIR 92 256 -6 21 36 0 0 chr1 96475524 96475552 -146188801 + AT_rich Low_complexity Low_complexity 1 28 0 517 237 59 24 chr1 96475672 96475841 -146188512 - HAL1b LINE L1 -411 937 763 180 0 0 0 chr1 96476223 96476243 -146188110 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 201 74 0 0 chr1 96476242 96476269 -146188084 + (CA)n Simple_repeat Simple_repeat 1 27 0 1374 288 108 30 chr1 96476284 96476896 -146187457 + MER39 LTR ERV1 6 707 0 819 261 92 96 chr1 96476896 96477657 -146186696 - HAL1 LINE L1 -908 1599 842 244 278 0 0 chr1 96477977 96478031 -146186322 + MER94 DNA DNA 1 54 -80 196 286 76 105 chr1 96479255 96479426 -146184927 - L2 LINE L2 -203 3069 2904 200 255 21 0 chr1 96479737 96479784 -146184569 - L2 LINE L2 -2 3270 3223 256 264 35 35 chr1 96480038 96480125 -146184228 + MLT1K LTR MaLR 182 268 -320 340 275 42 17 chr1 96480326 96480446 -146183907 + MLT1K LTR MaLR 466 588 0 374 324 22 76 chr1 96480496 96480721 -146183632 - L2 LINE L2 -200 3072 2860 225 277 85 0 chr1 96481954 96482048 -146182305 - L2 LINE L2 -11 3302 3201 467 250 189 20 chr1 96482071 96482267 -146182086 + MIR SINE MIR 31 259 -3 227 301 98 38 chr1 96482317 96482450 -146181903 - L2 LINE L2 -181 3091 2951 1771 128 27 131 chr1 96483635 96484010 -146180343 + MER44D DNA MER2_type 4 609 0 539 357 41 4 chr1 96484068 96484312 -146180041 + MIR SINE MIR 10 262 0 332 332 33 52 chr1 96487757 96487892 -146176461 + L2 LINE L2 2579 2710 -604 2239 175 56 14 chr1 96487892 96488338 -146176015 + MLT1C LTR MaLR 3 467 0 332 332 33 52 chr1 96488338 96488413 -146175940 + L2 LINE L2 2710 2785 -529 522 133 3 24 chr1 96488420 96488519 -146175834 + MLT1B LTR MaLR 321 390 0 625 306 85 36 chr1 96488525 96489056 -146175297 + L2 LINE L2 2716 3272 0 1219 246 83 13 chr1 96489456 96489842 -146174511 + MLT1J1 LTR MaLR 1 413 -33 248 318 36 45 chr1 96490355 96490465 -146173888 + L2 LINE L2 3164 3272 0 276 276 121 35 chr1 96490757 96490873 -146173480 + MLT1I LTR MaLR 284 409 0 880 294 72 30 chr1 96490873 96491278 -146173075 + MLT1L LTR MaLR 22 443 -172 309 326 130 7 chr1 96491325 96491463 -146172890 - MIR3 SINE MIR -36 172 18 319 277 92 0 chr1 96491472 96491591 -146172762 + MER117 DNA MER1_type 2 131 -66 912 253 105 79 chr1 96491695 96492161 -146172192 - MLT1E LTR MaLR 0 593 116 311 313 67 45 chr1 96493412 96493591 -146170762 + L3 LINE CR1 208 390 -1187 280 217 0 17 chr1 96494916 96494976 -146169377 - MIR SINE MIR -84 178 120 438 247 74 31 chr1 96495553 96495715 -146168638 - MIR SINE MIR -34 228 60 279 79 0 0 chr1 96496121 96496159 -146168194 + (TA)n Simple_repeat Simple_repeat 2 39 0 2093 125 3 0 chr1 96496159 96496446 -146167907 - AluSx SINE Alu -20 292 5 339 283 33 11 chr1 96496640 96496732 -146167621 + MIR3 SINE MIR 93 186 -22 2871 13 0 0 chr1 96497925 96498238 -146166115 + AluYb8 SINE Alu 1 313 -5 24 53 0 0 chr1 96500654 96500692 -146163661 + AT_rich Low_complexity Low_complexity 1 38 0 398 292 70 35 chr1 96501075 96501246 -146163107 - MLT1K LTR MaLR 0 588 412 275 165 76 13 chr1 96502099 96502178 -146162175 - L1ME4a LINE L1 -1 6120 6037 180 0 0 0 chr1 96502279 96502299 -146162054 + (TA)n Simple_repeat Simple_repeat 2 21 0 520 218 131 15 chr1 96502322 96502528 -146161825 - L1ME4a LINE L1 -255 5866 5637 235 314 255 0 chr1 96503165 96503318 -146161035 - MIR SINE MIR -36 226 35 259 338 61 61 chr1 96504271 96504419 -146159934 - L2 LINE L2 0 3272 3125 256 250 12 12 chr1 96504517 96504601 -146159752 + GA-rich Low_complexity Low_complexity 2 85 0 576 290 17 6 chr1 96506640 96506816 -146157537 + MIR SINE MIR 85 262 0 462 264 28 60 chr1 96507378 96507560 -146156793 - MIR SINE MIR -50 212 37 316 325 141 43 chr1 96508210 96508487 -146155866 - L2 LINE L2 -82 3190 2887 1118 221 53 89 chr1 96508745 96509138 -146155215 - MLT2D LTR ERVL -2 412 34 754 100 55 0 chr1 96509266 96509376 -146154977 - AluSq/x SINE Alu -195 117 2 577 181 16 39 chr1 96509388 96509515 -146154838 - MER31B LTR ERV1 -342 124 1 480 259 118 0 chr1 96509515 96509650 -146154703 - MIR SINE MIR -89 173 23 959 259 47 0 chr1 96511043 96511279 -146153074 - MIR SINE MIR -15 247 1 1130 296 94 12 chr1 96512669 96513084 -146151269 + MLT1J2 LTR MaLR 2 450 0 6313 78 27 1 chr1 96513277 96514675 -146149678 - L1PA10 LINE L1 -12 6156 4711 375 282 0 27 chr1 96514724 96514834 -146149519 + MLT1J2-int LTR MaLR 9 102 -1269 439 251 46 128 chr1 96515794 96516160 -146148193 + MLT1J2-int LTR MaLR 1035 1370 -1 1026 263 141 50 chr1 96516196 96516615 -146147738 + MLT1G1 LTR MaLR 56 528 -67 648 49 0 0 chr1 96516615 96516696 -146147657 + L1PA5 LINE L1 6073 6153 -1 1026 263 141 50 chr1 96516696 96516771 -146147582 + MLT1G1 LTR MaLR 528 595 0 415 308 17 0 chr1 96516771 96516891 -146147462 + MER117 DNA MER1_type 44 165 -32 268 276 0 118 chr1 96517398 96517525 -146146828 - L2 LINE L2 -35 3278 3167 841 61 69 0 chr1 96517644 96517775 -146146578 - L1MB7 LINE L1 0 6184 6045 494 296 30 44 chr1 96517982 96518185 -146146168 - MIR SINE MIR -14 248 49 338 301 18 9 chr1 96520587 96520700 -146143653 + MIR SINE MIR 133 246 -16 237 222 0 0 chr1 96521014 96521059 -146143294 - MLT1D LTR MaLR -60 445 401 246 260 114 49 chr1 96521503 96521626 -146142727 - MIR SINE MIR -50 212 82 511 148 0 0 chr1 96521632 96521713 -146142640 - MLT1D LTR MaLR 0 505 425 605 215 114 19 chr1 96521783 96521941 -146142412 - MLT1D LTR MaLR -332 173 1 181 330 155 10 chr1 96522822 96522925 -146141428 - MIR SINE MIR -112 150 33 367 242 269 26 chr1 96524226 96524588 -146139765 + L2 LINE L2 2610 3059 -254 354 23 0 0 chr1 96524593 96524636 -146139717 + (CA)n Simple_repeat Simple_repeat 1 43 0 1016 155 121 19 chr1 96524747 96524954 -146139399 - MSTA LTR MaLR -200 228 1 471 286 53 12 chr1 96525210 96525381 -146138972 - MIR3 SINE MIR -5 203 26 521 282 13 0 chr1 96526182 96526338 -146138015 + MIR SINE MIR 84 241 -21 230 378 93 0 chr1 96526353 96526504 -146137849 + L2 LINE L2 3108 3272 0 188 300 38 12 chr1 96527136 96527216 -146137137 - MIR SINE MIR -62 146 65 4515 125 14 95 chr1 96527591 96527747 -146136606 - L1MC3 LINE L1 0 7785 7618 2254 94 3 0 chr1 96527747 96528033 -146136320 + AluSp SINE Alu 1 287 -26 4515 125 14 95 chr1 96528033 96528591 -146135762 - L1MC3 LINE L1 -167 7618 7159 2324 79 0 14 chr1 96528591 96528882 -146135471 + AluY SINE Alu 1 287 -24 4515 125 14 95 chr1 96528882 96529085 -146135268 - L1MC3 LINE L1 -626 7159 6941 931 233 166 39 chr1 96529109 96529495 -146134858 + MLT1J LTR MaLR 70 504 -7 2599 63 0 9 chr1 96529588 96529904 -146134449 + AluSq SINE Alu 1 313 0 1070 144 0 62 chr1 96530341 96530382 -146133971 + MLT1K LTR MaLR 1 43 -347 2006 123 24 7 chr1 96530382 96530675 -146133678 + AluSx SINE Alu 1 298 -14 1070 144 0 62 chr1 96530675 96530827 -146133526 + MLT1K LTR MaLR 43 182 -208 944 204 51 15 chr1 96531164 96531360 -146132993 - MER3 DNA MER1_type -4 205 3 2464 136 63 5 chr1 96531489 96531931 -146132422 - L1MB3 LINE L1 -2 6181 5714 1232 245 114 29 chr1 96531951 96532364 -146131989 + MLT1K LTR MaLR 141 588 0 656 355 68 17 chr1 96532378 96533015 -146131338 - L2 LINE L2 -601 2713 2045 444 314 46 10 chr1 96533169 96533363 -146130990 + MIR SINE MIR 45 245 -17 393 22 0 0 chr1 96534067 96534113 -146130240 + (CA)n Simple_repeat Simple_repeat 1 46 0 35 0 0 0 chr1 96534951 96534986 -146129367 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr1 96535645 96535682 -146128671 + AT_rich Low_complexity Low_complexity 1 37 0 210 292 15 0 chr1 96537148 96537213 -146127140 + (TA)n Simple_repeat Simple_repeat 2 67 0 396 265 133 51 chr1 96537598 96537832 -146126521 - MIR SINE MIR 0 262 10 481 298 46 7 chr1 96538610 96538761 -146125592 - MIR SINE MIR -70 192 36 561 267 31 81 chr1 96538764 96539022 -146125331 - MIR SINE MIR -2 260 16 2687 74 3 69 chr1 96539365 96539592 -146124761 - THE1B LTR MaLR 0 364 171 1817 156 0 0 chr1 96539592 96539877 -146124476 + AluSx SINE Alu 23 307 0 2687 74 3 69 chr1 96539877 96540038 -146124315 - THE1B LTR MaLR -193 171 1 301 372 32 6 chr1 96540180 96540336 -146124017 + L2 LINE L2 3109 3268 -4 2024 150 73 0 chr1 96540620 96540960 -146123393 + MLT1A1 LTR MaLR 1 365 0 577 257 33 11 chr1 96541524 96541707 -146122646 + MIR SINE MIR 2 188 -74 636 82 0 0 chr1 96543819 96543904 -146120449 + AluSc SINE Alu 209 293 -16 2102 124 3 37 chr1 96544697 96545020 -146119333 + AluSq SINE Alu 1 312 -1 691 243 111 7 chr1 96546129 96546417 -146117936 - MER113 DNA MER1_type? 0 521 204 495 252 52 0 chr1 96546472 96546607 -146117746 - MIR SINE MIR 0 262 121 1427 160 0 17 chr1 96546773 96547010 -146117343 - MER46A DNA MER2_type 0 236 4 1847 163 0 13 chr1 96547087 96547393 -146116960 - AluJo SINE Alu -10 302 1 1337 161 5 14 chr1 96548649 96548866 -146115487 + AluJo SINE Alu 1 215 -97 235 238 12 12 chr1 96550000 96550084 -146114269 + CT-rich Low_complexity Low_complexity 4 87 0 213 250 39 0 chr1 96550108 96550160 -146114193 + CT-rich Low_complexity Low_complexity 4 57 0 644 251 70 0 chr1 96550455 96550642 -146113711 - MIR SINE MIR 0 262 63 464 289 42 18 chr1 96550660 96550826 -146113527 - Charlie8 DNA MER1_type -2247 170 1 395 312 57 6 chr1 96550901 96551058 -146113295 + MIR SINE MIR 21 185 -77 333 303 28 35 chr1 96551254 96551399 -146112954 - MIR SINE MIR -67 141 1 2035 128 10 14 chr1 96551805 96552102 -146112251 + AluSx SINE Alu 1 296 -16 324 120 0 0 chr1 96552823 96552873 -146111480 + (TG)n Simple_repeat Simple_repeat 2 51 0 1098 255 100 65 chr1 96554722 96554776 -146109577 - MLT1L LTR MaLR -6 609 558 2028 117 0 11 chr1 96554776 96555059 -146109294 + AluSx SINE Alu 23 302 -10 1098 255 100 65 chr1 96555059 96555592 -146108761 - MLT1L LTR MaLR -57 558 1 244 375 26 7 chr1 96555812 96555964 -146108389 + MIR3 SINE MIR 47 201 -7 410 253 35 70 chr1 96557049 96557268 -146107085 + MLT1L LTR MaLR 1 252 -363 1286 294 133 18 chr1 96557288 96557964 -146106389 + L2 LINE L2 1907 2660 -654 294 293 13 0 chr1 96558984 96559059 -146105294 - MIR3 SINE MIR -40 168 93 23 0 0 0 chr1 96559108 96559131 -146105222 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr1 96561475 96561508 -146102845 + GC_rich Low_complexity Low_complexity 1 33 0 30 0 0 0 chr1 96563714 96563744 -146100609 + GC_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr1 96564274 96564316 -146100037 + GC_rich Low_complexity Low_complexity 1 42 0 223 161 0 65 chr1 96564341 96564403 -146099950 + G-rich Low_complexity Low_complexity 2 59 0 209 146 0 49 chr1 96564561 96564602 -146099751 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 195 69 0 0 chr1 96566663 96566692 -146097661 + (A)n Simple_repeat Simple_repeat 1 29 0 182 121 0 0 chr1 96567874 96567907 -146096446 + L2 LINE L2 3240 3272 0 1652 212 47 70 chr1 96569088 96569645 -146094708 - MLT1E3 LTR MaLR -2 622 1 27 0 0 0 chr1 96570516 96570543 -146093810 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 96572076 96572097 -146092256 + AT_rich Low_complexity Low_complexity 1 21 0 1352 147 92 55 chr1 96572921 96573213 -146091140 + AluJo SINE Alu 1 303 -9 21 0 0 0 chr1 96573875 96573896 -146090457 + AT_rich Low_complexity Low_complexity 1 21 0 2030 136 24 41 chr1 96575030 96575189 -146089164 + MLT1B LTR MaLR 5 165 -428 2337 98 11 53 chr1 96575189 96575312 -146089041 + THE1B LTR MaLR 3 130 -234 2015 158 3 0 chr1 96575312 96575615 -146088738 - AluSx SINE Alu -8 304 1 2337 98 11 53 chr1 96575615 96575869 -146088484 + THE1B LTR MaLR 130 364 0 2030 136 24 41 chr1 96575869 96576100 -146088253 + MLT1B LTR MaLR 165 593 0 307 270 101 0 chr1 96576511 96576600 -146087753 - MER63A DNA MER1_type -7 203 106 333 242 84 0 chr1 96576843 96576938 -146087415 - MER5A DNA MER1_type -61 128 26 222 37 0 0 chr1 96578062 96578089 -146086264 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 369 0 0 0 chr1 96578723 96578764 -146085589 + (TG)n Simple_repeat Simple_repeat 2 42 0 238 283 48 55 chr1 96578772 96578917 -146085436 + L1ME4a LINE L1 5974 6117 -4 336 326 0 0 chr1 96579487 96579582 -146084771 - MIR3 SINE MIR -16 192 98 1969 156 0 6 chr1 96579831 96580145 -146084208 - AluJb SINE Alu 0 312 1 491 418 37 70 chr1 96580234 96580251 -146084102 - L1MC4a LINE L1 -1893 5915 5899 2526 118 42 37 chr1 96580251 96580683 -146083670 + Tigger2a DNA MER2_type 1 434 0 491 418 37 70 chr1 96580683 96581067 -146083286 - L1MC4a LINE L1 -1909 5899 5527 804 269 89 52 chr1 96581688 96582502 -146081851 + L1MEd LINE L1 534 1429 -4881 2470 81 0 0 chr1 96582502 96582810 -146081543 - AluY SINE Alu -3 308 1 804 269 89 52 chr1 96582810 96583010 -146081343 + L1MEd LINE L1 1429 1620 -4690 1440 129 0 0 chr1 96583236 96583429 -146080924 + AluSp SINE Alu 107 299 -14 1675 178 0 18 chr1 96583495 96583781 -146080572 + AluJo SINE Alu 1 281 -31 1101 276 35 8 chr1 96583889 96584291 -146080062 + LTR16A LTR ERVL 34 446 -4 2059 73 106 0 chr1 96584662 96584936 -146079417 + AluY SINE Alu 1 303 -8 473 291 109 14 chr1 96585712 96585932 -146078421 + MIR SINE MIR 21 261 -1 519 330 33 62 chr1 96587258 96587534 -146076819 - L2 LINE L2 -3 3269 3002 976 302 87 18 chr1 96587664 96588065 -146076288 + L3 LINE CR1 398 826 -751 290 271 112 0 chr1 96588283 96588390 -146075963 - MLT1J LTR MaLR -34 477 359 672 254 83 65 chr1 96588444 96588795 -146075558 - MLT1J LTR MaLR -154 357 1 475 327 180 1 chr1 96588798 96589103 -146075250 + L2 LINE L2 2659 3014 -299 1127 124 9 76 chr1 96589580 96589616 -146074737 - MER20 DNA MER1_type -7 212 175 2330 94 0 7 chr1 96589616 96589913 -146074440 + AluSx SINE Alu 1 295 -17 1127 124 9 76 chr1 96589913 96590101 -146074252 - MER20 DNA MER1_type -44 175 3 359 289 35 52 chr1 96590188 96590361 -146073992 + MIR SINE MIR 56 225 -37 348 231 0 13 chr1 96590641 96590719 -146073634 + L2 LINE L2 2527 2603 -711 1911 141 0 26 chr1 96590835 96591140 -146073213 - AluJo SINE Alu -15 297 1 679 228 15 56 chr1 96591164 96591361 -146072992 + MIR SINE MIR 29 217 -45 866 304 112 67 chr1 96591401 96592240 -146072113 - L3 LINE CR1 -388 1189 313 388 297 63 0 chr1 96592984 96593095 -146071258 + L2 LINE L2 3155 3272 0 338 268 53 71 chr1 96595064 96595261 -146069092 - MIR3 SINE MIR -66 142 3 340 306 168 5 chr1 96595726 96595935 -146068418 - L3 LINE CR1 -98 1479 1237 486 171 11 0 chr1 96595961 96596049 -146068304 + MLT1B LTR MaLR 1 89 -301 2043 140 151 8 chr1 96596051 96596422 -146067931 - MSTA LTR MaLR 0 428 5 6085 193 51 14 chr1 96596426 96597897 -146066456 - MSTA-int LTR MaLR 0 1580 1 2135 132 137 8 chr1 96597897 96598276 -146066077 - MSTA LTR MaLR 0 428 1 1429 156 24 34 chr1 96598276 96598571 -146065782 + MLT1B LTR MaLR 88 379 -11 281 218 55 0 chr1 96599408 96599463 -146064890 - AluJo SINE Alu -34 268 211 995 188 6 12 chr1 96599464 96599634 -146064719 - AluJo SINE Alu -143 169 1 983 152 55 0 chr1 96599637 96599802 -146064551 - AluSg/x SINE Alu -5 307 134 1995 154 0 0 chr1 96599802 96600108 -146064245 - AluSg SINE Alu -4 306 1 29 0 0 0 chr1 96603673 96603702 -146060651 + AT_rich Low_complexity Low_complexity 1 29 0 297 319 121 25 chr1 96604280 96604437 -146059916 + MIR SINE MIR 36 207 -55 21 0 0 0 chr1 96605455 96605476 -146058877 + AT_rich Low_complexity Low_complexity 1 21 0 647 166 13 236 chr1 96605477 96605699 -146058654 - L1MD3 LINE L1 -1 7994 7816 627 122 0 0 chr1 96605699 96605789 -146058564 - 5S rRNA rRNA -31 90 1 647 166 13 236 chr1 96605789 96605935 -146058418 - L1MD3 LINE L1 -179 7816 7639 2138 209 116 26 chr1 96605935 96606597 -146057756 - MER50 LTR ERV1 0 734 13 1262 217 13 19 chr1 96606597 96606826 -146057527 - L1MC4a LINE L1 -329 7479 7251 4202 116 33 33 chr1 96606826 96607553 -146056800 + LTR8A LTR ERV1 1 727 0 1262 217 13 19 chr1 96607553 96607632 -146056721 - L1MC4a LINE L1 -557 7251 7173 * 1768 235 95 61 chr1 96607629 96608627 -146055726 - L1MC4a LINE L1 -797 5349 4968 959 282 67 22 chr1 96608648 96609456 -146054897 - L1MC4a LINE L1 -1273 4873 4030 1753 123 6 27 chr1 96609475 96609824 -146054529 - MER4A LTR ERV1 -4 660 261 474 112 31 41 chr1 96609825 96609923 -146054430 - MER4A LTR ERV1 -567 97 1 309 193 22 89 chr1 96609930 96610065 -146054288 - L1MC4a LINE L1 -2146 4000 3875 1100 242 155 35 chr1 96610077 96610187 -146054166 + MLT1D LTR MaLR 1 96 -409 2748 19 0 0 chr1 96610187 96610494 -146053859 - AluYa5 SINE Alu -4 307 1 1100 242 155 35 chr1 96610494 96610717 -146053636 + MLT1D LTR MaLR 96 291 -214 1608 193 3 17 chr1 96610717 96611018 -146053335 - AluJb SINE Alu -15 297 1 1100 242 155 35 chr1 96611018 96611134 -146053219 + MLT1D LTR MaLR 291 505 0 2664 206 6 37 chr1 96611134 96611934 -146052419 + MLT1D-int LTR MaLR 1 887 -484 1339 226 62 83 chr1 96612013 96612481 -146051872 + MLT1D-int LTR MaLR 881 1338 -33 1220 223 104 50 chr1 96612508 96612783 -146051570 + MLT1D LTR MaLR 1 314 -191 1661 209 86 30 chr1 96612783 96613214 -146051139 - MSTB2 LTR MaLR 0 457 3 1220 223 104 50 chr1 96613214 96613417 -146050936 + MLT1D LTR MaLR 314 505 0 570 302 61 26 chr1 96613476 96614095 -146050258 - L1MC4a LINE L1 -2316 3830 3190 450 323 84 18 chr1 96614154 96614643 -146049710 - HAL1b LINE L1 -543 805 285 3822 198 27 10 chr1 96615445 96616339 -146048014 + L1MA9 LINE L1 5366 6274 -38 487 269 118 71 chr1 96616937 96617260 -146047093 + L2 LINE L2 2182 2519 -795 2125 161 17 48 chr1 96617754 96618233 -146046120 - Charlie4a DNA MER1_type -44 464 1 411 196 0 98 chr1 96619672 96619739 -146044614 + MER5A DNA MER1_type 8 63 -126 2247 113 0 0 chr1 96619739 96620041 -146044312 + AluY SINE Alu 1 302 -9 411 196 0 98 chr1 96620041 96620075 -146044278 + MER5A DNA MER1_type 63 99 -90 267 174 43 43 chr1 96620877 96620946 -146043407 + MER8 DNA MER2_type 111 179 -60 537 170 0 20 chr1 96620970 96621070 -146043283 - MER2 DNA MER2_type -247 98 1 2029 117 3 42 chr1 96621192 96621500 -146042853 - AluSx SINE Alu -16 296 1 346 326 85 51 chr1 96621526 96621762 -146042591 - MIR SINE MIR 0 262 19 186 355 16 0 chr1 96621878 96621940 -146042413 + MIR SINE MIR 82 144 -118 255 271 47 9 chr1 96623346 96623453 -146040900 + MLT1J1 LTR MaLR 21 131 -315 414 247 80 76 chr1 96623455 96623614 -146040739 + MLT1J2 LTR MaLR 168 330 -120 1423 177 23 101 chr1 96623614 96623914 -146040439 - MLT1A1 LTR MaLR 0 365 102 2096 148 0 7 chr1 96623914 96624218 -146040135 - AluSx SINE Alu -10 302 1 1423 177 23 101 chr1 96624218 96624313 -146040040 - MLT1A1 LTR MaLR -263 102 1 414 247 80 76 chr1 96624313 96624404 -146039949 + MLT1J2 LTR MaLR 330 419 -31 619 281 105 18 chr1 96624555 96624783 -146039570 - MIR SINE MIR -14 248 1 338 121 17 0 chr1 96625473 96625531 -146038822 - MADE1 DNA Mariner 0 80 22 552 287 47 21 chr1 96625544 96625744 -146038609 + MIR SINE MIR 2 199 -63 346 310 123 6 chr1 96627753 96627924 -146036429 - MIR SINE MIR -6 256 66 344 321 131 0 chr1 96627946 96628083 -146036270 + L2 LINE L2 3118 3272 0 901 236 89 20 chr1 96628681 96629051 -146035302 + MSTC LTR MaLR 1 428 0 5927 231 77 34 chr1 96629055 96630572 -146033781 + MSTC-int LTR MaLR 4 1601 -134 2307 90 0 3 chr1 96630572 96630873 -146033480 - AluY SINE Alu -11 300 1 5927 231 77 34 chr1 96630873 96631015 -146033338 + MSTC-int LTR MaLR 1601 1735 0 611 192 74 35 chr1 96631015 96631290 -146033063 + MLT1A2 LTR MaLR 1 331 -97 32 26 0 0 chr1 96631745 96631784 -146032569 + AT_rich Low_complexity Low_complexity 1 39 0 2340 88 7 3 chr1 96632726 96633033 -146031320 - AluSg SINE Alu -2 308 1 254 248 103 21 chr1 96633653 96633798 -146030555 - L1ME4a LINE L1 -1 6120 5964 1275 141 0 0 chr1 96633888 96634073 -146030280 + AluSx SINE Alu 5 189 -123 236 132 0 57 chr1 96634078 96634131 -146030222 - L1ME4a LINE L1 -280 5841 5792 432 213 189 16 chr1 96634730 96634852 -146029501 - MIR SINE MIR -4 258 116 777 302 107 64 chr1 96635122 96636167 -146028186 - L1M4 LINE L1 -897 5249 4160 229 327 39 0 chr1 96636170 96636274 -146028079 - L1M4 LINE L1 -2008 4138 4031 23 54 0 0 chr1 96636297 96636334 -146028019 + AT_rich Low_complexity Low_complexity 1 37 0 1764 190 22 96 chr1 96636451 96636721 -146027632 + LTR40a LTR ERVL 1 211 -308 2078 42 0 0 chr1 96636721 96636957 -146027396 + AluY SINE Alu 68 303 -8 1764 190 22 96 chr1 96636957 96637239 -146027114 + LTR40a LTR ERVL 211 512 -7 1853 159 10 26 chr1 96637240 96637542 -146026811 - AluJo SINE Alu -15 297 1 861 336 124 35 chr1 96637565 96637770 -146026583 - L1M4 LINE L1 -2385 3761 3576 1995 135 0 53 chr1 96637770 96638088 -146026265 + AluSx SINE Alu 1 301 -11 861 336 124 35 chr1 96638088 96638878 -146025475 - L1M4 LINE L1 -2570 3576 2677 27 0 0 0 chr1 96639186 96639213 -146025140 + AT_rich Low_complexity Low_complexity 1 27 0 49 71 0 0 chr1 96639316 96639414 -146024939 + AT_rich Low_complexity Low_complexity 1 98 0 1164 89 0 6 chr1 96639416 96639585 -146024768 - L1MA1 LINE L1 -4 6298 6131 691 34 0 0 chr1 96639585 96639669 -146024684 - L1PA4 LINE L1 -3 6152 6064 6098 105 9 6 chr1 96639669 96640707 -146023646 - L1MA1 LINE L1 -147 6155 5107 23 78 0 0 chr1 96640886 96640937 -146023416 + AT_rich Low_complexity Low_complexity 1 51 0 460 277 53 58 chr1 96641028 96641216 -146023137 - MIR3 SINE MIR -6 202 16 288 297 71 77 chr1 96643326 96643508 -146020845 - MIR3 SINE MIR -4 204 24 403 280 225 0 chr1 96643790 96643972 -146020381 + MIR SINE MIR 25 247 -15 351 268 169 33 chr1 96643966 96644179 -146020174 - MIR SINE MIR -2 260 19 * 462 298 50 39 chr1 96644235 96644416 -146019937 + MIR SINE MIR 2 184 -78 2058 243 86 6 chr1 96645969 96646483 -146017870 - MLT1H1 LTR MaLR 0 555 1 277 234 21 53 chr1 96646918 96647012 -146017341 - MLT1H1-int LTR MaLR -995 376 286 2097 231 33 4 chr1 96647147 96647658 -146016695 - MLT1H1 LTR MaLR 0 555 30 193 339 73 37 chr1 96647755 96647864 -146016489 + MIR SINE MIR 34 146 -62 392 272 114 38 chr1 96648539 96648723 -146015630 + MIR3 SINE MIR 2 199 -9 4401 257 122 25 chr1 96648796 96650690 -146013663 - L2 LINE L2 0 3313 1234 26 0 0 0 chr1 96651315 96651341 -146013012 + AT_rich Low_complexity Low_complexity 1 26 0 412 187 0 0 chr1 96652597 96652672 -146011681 + MER116 DNA Mariner 1 75 -5 592 328 27 46 chr1 96652978 96653347 -146011006 + L2 LINE L2 1684 2045 -1269 273 280 56 16 chr1 96653355 96653480 -146010873 + L2 LINE L2 3182 3311 -2 922 224 5 5 chr1 96655098 96655328 -146009025 - L1MA9 LINE L1 -1 6299 6068 274 337 57 51 chr1 96655456 96655631 -146008722 + MIR SINE MIR 66 241 -21 230 349 0 0 chr1 96655631 96655714 -146008639 + MIR SINE MIR 174 256 -6 581 245 67 29 chr1 96655858 96656066 -146008287 + LTR16C LTR ERVL 273 488 -3 562 275 97 75 chr1 96656184 96656504 -146007849 - L2 LINE L2 0 3313 2987 228 240 300 32 chr1 96656868 96657024 -146007329 - MIR SINE MIR -66 196 8 210 236 0 36 chr1 96657817 96657872 -146006481 - MIR SINE MIR -74 188 136 509 336 21 17 chr1 96657963 96658204 -146006149 + MIR SINE MIR 13 254 -8 1641 125 42 125 chr1 96658221 96658630 -146005723 - THE1C LTR MaLR 0 375 1 334 260 60 0 chr1 96658650 96658750 -146005603 - MER94 DNA DNA -3 131 26 1754 218 16 0 chr1 96658752 96659137 -146005216 + L1MD2 LINE L1 5944 6334 -25 182 371 69 0 chr1 96659210 96659326 -146005027 + L2 LINE L2 3050 3173 -140 * 356 250 171 51 chr1 96659319 96659495 -146004858 - L2 LINE L2 -1 3312 3116 1363 232 101 63 chr1 96659508 96659997 -146004356 - MLT2B1 LTR ERVL -8 442 4 225 300 33 22 chr1 96660028 96660118 -146004235 - L2 LINE L2 -235 3078 2988 * 537 206 145 8 chr1 96660117 96660248 -146004105 + L2 LINE L2 3162 3310 -3 269 302 73 10 chr1 96660258 96660354 -146003999 + L2 LINE L2 3168 3269 -3 301 250 17 112 chr1 96660385 96660501 -146003852 + L2 LINE L2 3199 3303 -10 288 336 10 10 chr1 96660511 96660615 -146003738 - MIR SINE MIR -71 137 34 290 301 52 137 chr1 96664182 96664264 -146000089 - L2 LINE L2 -2 3270 3183 2260 98 7 10 chr1 96664264 96664569 -145999784 + AluSq SINE Alu 1 304 -9 290 301 52 137 chr1 96664569 96664931 -145999422 - L2 LINE L2 -89 3183 2864 499 328 113 26 chr1 96664991 96665381 -145998972 - MLT1K LTR MaLR -65 523 100 2230 86 38 3 chr1 96665595 96665887 -145998466 - AluSx SINE Alu -7 305 4 499 319 0 0 chr1 96666104 96666248 -145998105 - MIR SINE MIR -50 212 69 1042 190 85 61 chr1 96666333 96666435 -145997918 + MER2 DNA MER2_type 1 99 -246 2372 68 0 0 chr1 96666435 96666731 -145997622 + AluY SINE Alu 1 296 -15 1042 190 85 61 chr1 96666731 96666957 -145997396 + MER2 DNA MER2_type 99 345 0 1957 154 42 0 chr1 96667058 96667414 -145996939 - L1MB4 LINE L1 -10 6170 5800 226 233 111 33 chr1 96667676 96667766 -145996587 + L2 LINE L2 3209 3305 -8 270 314 124 16 chr1 96667776 96667897 -145996456 - L2 LINE L2 -4 3309 3176 658 275 134 35 chr1 96670564 96670960 -145993393 - LTR16A LTR ERVL 0 450 16 317 376 46 5 chr1 96672166 96672360 -145991993 - L3b LINE CR1 -20 1563 1362 302 309 57 72 chr1 96672359 96672553 -145991800 + MIR SINE MIR 20 210 -52 * 610 213 0 16 chr1 96673898 96674020 -145990333 - L2 LINE L2 0 3313 3194 253 356 57 8 chr1 96675092 96675217 -145989136 - MIR SINE MIR -62 146 39 186 43 0 0 chr1 96677002 96677025 -145987328 + (CA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr1 96679675 96679696 -145984657 + AT_rich Low_complexity Low_complexity 1 21 0 529 238 131 30 chr1 96684242 96684410 -145979943 - MIR SINE MIR 0 262 78 189 147 0 0 chr1 96685409 96685443 -145978910 + (A)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chr1 96685573 96685612 -145978741 + AT_rich Low_complexity Low_complexity 1 39 0 270 268 124 10 chr1 96689834 96689931 -145974422 - MIR SINE MIR -50 212 105 793 219 56 17 chr1 96689940 96690173 -145974180 + MER96B DNA MER1_type? 1 242 -175 203 245 0 61 chr1 96693123 96693172 -145971181 + MIR SINE MIR 25 70 -138 227 246 35 0 chr1 96693226 96693283 -145971070 + MIR SINE MIR 89 147 -115 333 236 220 26 chr1 96693671 96693862 -145970491 - MIR SINE MIR -6 256 29 452 282 94 29 chr1 96694191 96694361 -145969992 - MIR SINE MIR -42 220 40 228 387 36 0 chr1 96694388 96694499 -145969854 - MIR SINE MIR -67 195 81 303 319 150 0 chr1 96695194 96695307 -145969046 + L2 LINE L2 3142 3271 -1 291 28 0 0 chr1 96697236 96697272 -145967081 + (TG)n Simple_repeat Simple_repeat 2 37 0 523 197 55 16 chr1 96697365 96697492 -145966861 + MIR3 SINE MIR 67 198 -10 997 184 61 106 chr1 96698333 96698807 -145965546 + MLT1G LTR MaLR 1 492 -50 30 0 0 0 chr1 96698809 96698839 -145965514 + AT_rich Low_complexity Low_complexity 1 30 0 697 174 0 38 chr1 96698839 96698971 -145965382 - FLAM_C SINE Alu -3 130 4 301 161 16 16 chr1 96698971 96699033 -145965320 + MLT1G LTR MaLR 531 592 -3 292 365 39 19 chr1 96699179 96699335 -145965018 + MIR3 SINE MIR 43 201 -7 1054 292 92 16 chr1 96699551 96700104 -145964249 - L2 LINE L2 0 3313 2706 233 29 0 29 chr1 96700109 96700144 -145964209 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2163 72 0 45 chr1 96700146 96700438 -145963915 - AluY SINE Alu -32 279 1 458 317 156 15 chr1 96700634 96701038 -145963315 - L2 LINE L2 -383 2931 2471 4019 75 31 4 chr1 96701501 96702045 -145962308 + L1PA10 LINE L1 5607 6165 -3 243 0 0 0 chr1 96702509 96702536 -145961817 + (T)n Simple_repeat Simple_repeat 1 27 0 706 204 65 32 chr1 96702550 96702736 -145961617 + MIR SINE MIR 5 196 -66 * 724 237 30 6 chr1 96702726 96702895 -145961458 + MIR SINE MIR 12 184 -78 692 298 107 5 chr1 96703595 96703810 -145960543 - MIR SINE MIR -4 258 22 196 306 51 41 chr1 96704568 96704666 -145959687 + L2 LINE L2 3210 3308 -5 12167 70 6 4 chr1 96704754 96707234 -145957119 - L1PA7 LINE L1 -30 6124 3636 278 333 82 19 chr1 96707434 96707593 -145956760 + MIR3 SINE MIR 25 193 -15 247 0 0 73 chr1 96708195 96708236 -145956117 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 453 215 168 36 chr1 96708251 96708483 -145955870 - MIR SINE MIR 0 262 10 270 0 0 0 chr1 96709071 96709101 -145955252 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 694 248 104 5 chr1 96710432 96710634 -145953719 + MIR SINE MIR 4 225 -37 197 342 45 27 chr1 96710675 96710786 -145953567 - L2 LINE L2 -1 3312 3200 1083 122 0 0 chr1 96711324 96711480 -145952873 + AluSg/x SINE Alu 147 302 -10 400 365 90 3 chr1 96711486 96711774 -145952579 - L2 LINE L2 -23 3249 2937 2330 40 0 4 chr1 96712000 96712278 -145952075 - AluY SINE Alu -4 307 31 1995 141 24 0 chr1 96713368 96713666 -145950687 - AluSq SINE Alu -8 305 1 22 35 0 0 chr1 96713924 96713953 -145950400 + AT_rich Low_complexity Low_complexity 1 29 0 201 167 0 0 chr1 96714048 96714084 -145950269 + T-rich Low_complexity Low_complexity 1 36 0 2304 78 7 10 chr1 96714101 96714407 -145949946 + AluY SINE Alu 1 305 -6 18538 168 15 8 chr1 96714529 96715188 -145949165 - L1PA14 LINE L1 0 6161 5509 2104 127 17 0 chr1 96715188 96715488 -145948865 - AluSx SINE Alu -6 306 2 18538 168 15 8 chr1 96715488 96719425 -145944928 - L1PA14 LINE L1 -652 5509 1529 783 322 87 53 chr1 96719426 96720068 -145944285 - L1PA14 LINE L1 -968 1539 876 23 78 0 0 chr1 96720616 96720667 -145943686 + AT_rich Low_complexity Low_complexity 1 51 0 287 257 98 33 chr1 96720689 96720872 -145943481 - HAL1 LINE L1 0 2507 2313 484 295 148 53 chr1 96720921 96721186 -145943167 - HAL1 LINE L1 -187 2320 2082 803 183 8 0 chr1 96721186 96721317 -145943036 - FLAM_A SINE Alu 0 133 2 484 295 148 53 chr1 96721317 96721884 -145942469 - HAL1 LINE L1 -425 2082 1372 1744 232 61 22 chr1 96722014 96722651 -145941702 - L1M4 LINE L1 -3373 2773 2112 1521 218 155 30 chr1 96722784 96723462 -145940891 - LTR50 LTR ERVL 0 795 5 23 0 0 0 chr1 96723500 96723523 -145940830 + AT_rich Low_complexity Low_complexity 1 23 0 300 373 66 14 chr1 96723733 96723945 -145940408 - L2 LINE L2 -184 3088 2866 922 230 77 18 chr1 96727590 96727812 -145936541 + MIR SINE MIR 10 244 -18 1610 137 29 87 chr1 96728326 96728706 -145935647 + MLT2D LTR ERVL 1 358 -56 533 222 48 32 chr1 96732291 96732417 -145931936 + MIR SINE MIR 12 139 -123 197 62 0 31 chr1 96732421 96732453 -145931900 + (TAA)n Simple_repeat Simple_repeat 2 32 0 187 290 14 14 chr1 96732704 96732773 -145931580 + MIR SINE MIR 194 262 0 426 185 0 0 chr1 96733648 96733729 -145930624 - AluJo SINE Alu -2 310 230 3895 80 192 2 chr1 96733729 96734307 -145930046 + LTR12 LTR ERV1 1 688 0 1451 171 0 34 chr1 96734309 96734548 -145929805 - AluJo SINE Alu -81 231 1 346 296 9 9 chr1 96735089 96735197 -145929156 + MLT1I LTR MaLR 294 401 -8 310 289 11 11 chr1 96736805 96736895 -145927458 + HAL1 LINE L1 1381 1470 -1037 1372 108 26 0 chr1 96736900 96737095 -145927258 + AluSp SINE Alu 106 305 -8 903 222 154 8 chr1 96737109 96737460 -145926893 + HAL1 LINE L1 1478 1879 -628 328 309 0 59 chr1 96737600 96737736 -145926617 + HAL1b LINE L1 746 873 -475 621 183 70 0 chr1 96738102 96738217 -145926136 - FLAM_A SINE Alu -10 123 1 1479 169 31 69 chr1 96738229 96738263 -145926090 + MER46B DNA MER2_type 26 60 -2671 1448 203 7 36 chr1 96738263 96738569 -145925784 - AluJb SINE Alu -15 297 1 1479 169 31 69 chr1 96738569 96738883 -145925470 + MER46B DNA MER2_type 60 236 0 257 259 0 0 chr1 96738899 96738953 -145925400 + Tigger5 DNA MER2_type 2 55 -2268 276 213 0 16 chr1 96738974 96739035 -145925318 + Tigger5 DNA MER2_type 2264 2323 0 387 0 0 0 chr1 96742253 96742296 -145922057 + (CA)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr1 96742903 96742925 -145921428 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2236 85 7 7 chr1 96742927 96743220 -145921133 - AluSp SINE Alu -20 293 1 236 305 40 79 chr1 96744380 96744557 -145919796 - L2 LINE L2 -168 3104 2935 495 188 247 6 chr1 96746213 96746383 -145917970 - MER58C DNA MER1_type -1 214 4 23 0 0 0 chr1 96746512 96746535 -145917818 + AT_rich Low_complexity Low_complexity 1 23 0 367 269 9 46 chr1 96746863 96746971 -145917382 - L2 LINE L2 -23 3290 3187 266 264 66 0 chr1 96747024 96747115 -145917238 - MIR SINE MIR -35 227 131 185 207 0 52 chr1 96749299 96749357 -145914996 + MIR SINE MIR 88 142 -120 225 160 0 40 chr1 96749662 96749712 -145914641 + L2 LINE L2 3266 3313 0 426 159 0 0 chr1 96751528 96751597 -145912756 + Tigger2 DNA MER2_type 1 69 -2649 * 2332 114 13 76 chr1 96751581 96751775 -145912578 + Tigger2 DNA MER2_type 2267 2472 -246 2202 130 55 6 chr1 96751775 96752122 -145912231 + THE1B LTR MaLR 1 364 0 2332 114 13 76 chr1 96752122 96752336 -145912017 + Tigger2 DNA MER2_type 2472 2644 -74 2312 111 0 0 chr1 96752336 96752633 -145911720 + AluSx SINE Alu 1 297 -15 2332 114 13 76 chr1 96752633 96752695 -145911658 + Tigger2 DNA MER2_type 2644 2708 -10 205 234 0 21 chr1 96752741 96752788 -145911565 - L3b LINE CR1 -10 1573 1528 203 371 0 0 chr1 96752809 96752879 -145911474 + MER5A DNA MER1_type 65 134 -55 723 156 0 0 chr1 96752957 96753066 -145911287 - FLAM_C SINE Alu -25 118 10 279 258 135 80 chr1 96753067 96753230 -145911123 - MER5B DNA MER1_type -6 172 1 285 346 29 15 chr1 96753288 96753424 -145910929 - L3 LINE CR1 -147 1430 1293 299 318 11 0 chr1 96753667 96753755 -145910598 - L2 LINE L2 0 3313 3225 * 419 302 106 21 chr1 96753745 96753934 -145910419 - L3 LINE CR1 -489 1088 884 198 245 75 0 chr1 96754016 96754069 -145910284 - MIR SINE MIR -76 186 130 790 184 61 10 chr1 96754070 96754266 -145910087 - MLT1A1 LTR MaLR 0 365 160 222 239 0 0 chr1 96754486 96754557 -145909796 + (TG)n Simple_repeat Simple_repeat 2 72 0 2347 225 93 3 chr1 96754732 96755323 -145909030 + MLT1E1 LTR MaLR 3 646 -8 258 32 0 0 chr1 96755516 96755547 -145908806 + (TG)n Simple_repeat Simple_repeat 1 31 0 1321 207 15 22 chr1 96755566 96755890 -145908463 - L1MB7 LINE L1 -16 6168 5847 335 127 16 0 chr1 96755896 96755959 -145908394 + L1MB7 LINE L1 5767 5830 -344 828 234 37 7 chr1 96755960 96756229 -145908124 - L1M4 LINE L1 -3654 2492 2216 248 242 242 7 chr1 96756540 96756689 -145907664 + MLT1J2 LTR MaLR 267 450 0 22 0 0 0 chr1 96761382 96761404 -145902949 + AT_rich Low_complexity Low_complexity 1 22 0 397 241 0 12 chr1 96763030 96763113 -145901240 + MIR SINE MIR 34 115 -147 4434 111 44 0 chr1 96763126 96763785 -145900568 - LTR12 LTR ERV1 0 688 1 542 254 35 56 chr1 96763864 96764152 -145900201 - pTR5 LTR ERV1 -1410 1028 747 380 173 49 12 chr1 96764152 96764233 -145900120 + MIR SINE MIR 158 241 -21 3501 115 23 6 chr1 96765648 96766161 -145898192 + MER1A DNA MER1_type 5 526 -1 225 266 104 99 chr1 96766258 96766480 -145897873 + L2 LINE L2 3086 3308 -5 23 54 0 0 chr1 96766562 96766599 -145897754 + AT_rich Low_complexity Low_complexity 1 37 0 1322 192 36 0 chr1 96766599 96766901 -145897452 - L1MA4 LINE L1 -1 6299 5987 371 285 58 68 chr1 96767201 96767408 -145896945 - HAL1b LINE L1 -418 930 726 23 33 0 0 chr1 96767794 96767824 -145896529 + AT_rich Low_complexity Low_complexity 1 30 0 467 284 93 73 chr1 96767874 96768213 -145896140 - HAL1 LINE L1 -698 1809 1451 2392 76 0 10 chr1 96768213 96768514 -145895839 - AluY SINE Alu -13 298 1 467 284 93 73 chr1 96768514 96768775 -145895578 - HAL1 LINE L1 -1056 1451 1197 485 339 66 21 chr1 96768814 96769056 -145895297 - HAL1 LINE L1 -1444 1063 811 2418 96 0 10 chr1 96769188 96769501 -145894852 - AluY SINE Alu -1 310 1 22 56 0 0 chr1 96770474 96770510 -145893843 + AT_rich Low_complexity Low_complexity 1 36 0 22183 144 21 10 chr1 96770539 96777867 -145886486 - L1MA3 LINE L1 -296 7428 16 867 190 0 0 chr1 96777873 96778010 -145886343 - AluJo SINE Alu -175 137 1 2352 109 0 3 chr1 96778025 96778338 -145886015 - AluSq SINE Alu -1 312 1 225 182 0 0 chr1 96778350 96778405 -145885948 + T-rich Low_complexity Low_complexity 1 55 0 6017 36 0 0 chr1 96778418 96779132 -145885221 - L1PA4 LINE L1 0 6155 5442 195 191 0 24 chr1 96779138 96779180 -145885173 - L3 LINE CR1 -3 1574 1534 219 269 204 0 chr1 96781567 96781675 -145882678 + MIR SINE MIR 22 151 -111 2431 139 26 33 chr1 96781762 96782222 -145882131 - MSTB2 LTR MaLR 0 457 1 330 253 12 0 chr1 96784397 96784480 -145879873 - L2 LINE L2 -2 3311 3228 338 376 76 19 chr1 96784483 96784693 -145879660 + L2 LINE L2 3018 3239 -33 2937 125 0 5 chr1 96784755 96785194 -145879159 - L1PA15 LINE L1 0 6165 5729 830 278 130 37 chr1 96785194 96785680 -145878673 + MLT1H LTR MaLR 18 548 -1 218 338 59 22 chr1 96785836 96785972 -145878381 - MIR3 SINE MIR -1 207 67 352 329 168 20 chr1 96787769 96787918 -145876435 - L2 LINE L2 0 3272 3102 207 0 0 0 chr1 96788477 96788500 -145875853 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2257 89 0 0 chr1 96789549 96789851 -145874502 + AluY SINE Alu 1 302 -9 877 275 47 4 chr1 96791520 96791756 -145872597 - MIR SINE MIR 0 262 17 238 214 82 51 chr1 96796054 96796152 -145868201 - Charlie7 DNA MER1_type 0 2612 2512 323 300 117 0 chr1 96796153 96796333 -145868020 - Charlie7 DNA MER1_type -1922 690 490 240 259 125 0 chr1 96796598 96796710 -145867643 - Charlie7 DNA MER1_type -2426 186 61 292 346 58 67 chr1 96796955 96797378 -145866975 - L2 LINE L2 -61 3211 2712 220 316 0 0 chr1 96797395 96797452 -145866901 + MIR SINE MIR 206 262 0 406 157 14 0 chr1 96797675 96797745 -145866608 - Tigger5 DNA MER2_type -3 2320 2250 259 103 0 221 chr1 96797751 96797819 -145866534 + Tigger5 DNA MER2_type 2265 2317 -6 416 208 0 0 chr1 96797823 96797900 -145866453 - Tigger5 DNA MER2_type -2246 77 1 303 28 0 0 chr1 96798232 96798268 -145866085 + (TG)n Simple_repeat Simple_repeat 2 37 0 246 331 14 21 chr1 96800035 96800180 -145864173 + CT-rich Low_complexity Low_complexity 4 147 0 22 0 0 0 chr1 96800482 96800504 -145863849 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr1 96800975 96801004 -145863349 + (TG)n Simple_repeat Simple_repeat 2 30 0 1326 179 64 78 chr1 96801029 96801198 -145863155 - AluJo SINE Alu -20 292 127 2431 53 40 0 chr1 96801198 96801497 -145862856 - AluY SINE Alu 0 311 1 1326 179 64 78 chr1 96801497 96801623 -145862730 - AluJo SINE Alu -185 127 1 546 242 18 65 chr1 96801867 96802086 -145862267 - MLT1I LTR MaLR -124 285 83 1944 103 51 87 chr1 96802335 96802406 -145861947 - THE1C LTR MaLR 0 375 303 2444 80 3 3 chr1 96802406 96802718 -145861635 + AluSp SINE Alu 1 312 -1 1944 103 51 87 chr1 96802718 96803035 -145861318 - THE1C LTR MaLR -72 303 1 180 0 0 0 chr1 96803168 96803188 -145861165 + (T)n Simple_repeat Simple_repeat 1 20 0 269 191 0 0 chr1 96803517 96803564 -145860789 + L2 LINE L2 3267 3313 0 231 203 17 34 chr1 96804071 96804130 -145860223 + L2 LINE L2 3253 3310 -3 424 271 112 48 chr1 96805695 96805940 -145858413 - MIR SINE MIR 0 262 5 254 213 0 13 chr1 96806367 96806442 -145857911 + GA-rich Low_complexity Low_complexity 3 76 0 2310 52 6 52 chr1 96806505 96806831 -145857522 - AluY SINE Alu 0 311 1 451 295 11 49 chr1 96806898 96807081 -145857272 - MIR SINE MIR -56 206 31 886 358 126 22 chr1 96807152 96807876 -145856477 + L2 LINE L2 1846 2644 -670 337 250 148 17 chr1 96808117 96808293 -145856060 + L2 LINE L2 3086 3284 -29 869 259 73 53 chr1 96808304 96808795 -145855558 - LTR33 LTR ERVL 0 521 21 319 287 50 0 chr1 96809503 96809604 -145854749 + L2 LINE L2 3208 3313 0 2235 100 0 3 chr1 96809758 96810047 -145854306 - AluSc SINE Alu -21 288 1 3408 220 52 27 chr1 96810600 96811557 -145852796 - L1ME2 LINE L1 -10 6154 5162 2160 117 0 0 chr1 96811557 96811871 -145852482 - AluSc SINE Alu 0 309 1 3408 220 52 27 chr1 96811871 96812513 -145851840 - L1ME2 LINE L1 -1002 5162 4538 900 154 100 75 chr1 96812541 96812820 -145851533 + AluJo SINE Alu 1 286 -16 300 305 62 0 chr1 96812841 96813051 -145851302 - L1ME2 LINE L1 -1597 4549 4327 879 287 74 28 chr1 96815357 96815751 -145848602 - MLT1J2 LTR MaLR 0 450 39 561 276 68 31 chr1 96815951 96816143 -145848210 + MIR3 SINE MIR 2 200 -8 347 261 156 17 chr1 96817210 96817390 -145846963 - MIR SINE MIR -46 216 12 1059 188 16 0 chr1 96818797 96818983 -145845370 + MER5A DNA MER1_type 1 189 0 246 253 48 103 chr1 96820031 96820177 -145844176 + L2 LINE L2 3161 3298 -15 195 42 0 0 chr1 96820178 96820202 -145844151 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 366 269 51 74 chr1 96822178 96822353 -145842000 + MIR SINE MIR 20 190 -72 354 276 15 108 chr1 96822984 96823039 -145841314 + MIR3 SINE MIR 14 73 -135 2149 75 44 17 chr1 96823039 96823333 -145841020 - AluY SINE Alu -9 302 1 354 276 15 108 chr1 96823333 96823434 -145840919 + MIR3 SINE MIR 73 149 -59 785 269 5 0 chr1 96823434 96823642 -145840711 - MER3 DNA MER1_type 0 209 1 354 276 15 108 chr1 96823642 96823687 -145840666 + MIR3 SINE MIR 149 197 -11 793 205 60 0 chr1 96825268 96825434 -145838919 - MER45A DNA AcHobo -1 177 2 225 250 0 0 chr1 96825452 96825512 -145838841 + CT-rich Low_complexity Low_complexity 3 62 0 548 188 36 12 chr1 96825543 96825708 -145838645 + CT-rich Low_complexity Low_complexity 2 170 0 2402 46 0 3 chr1 96825834 96826155 -145838198 + AluY SINE Alu 1 320 0 245 331 8 62 chr1 96826182 96826312 -145838041 - MIR SINE MIR -63 145 23 325 226 161 7 chr1 96826774 96826911 -145837442 + MER103 DNA DNA 8 165 -1 857 210 84 105 chr1 96827022 96827499 -145836854 + MLT1C LTR MaLR 1 467 0 1605 161 35 87 chr1 96831422 96831789 -145832564 + MER7A DNA MER2_type 1 346 0 2447 74 0 13 chr1 96832775 96833087 -145831266 + AluSg SINE Alu 1 308 -2 6508 134 19 28 chr1 96833981 96834657 -145829696 - L1MA8 LINE L1 -43 6248 5568 1076 142 40 0 chr1 96834657 96834883 -145829470 - L1MA7 LINE L1 -10 6281 6047 6508 134 19 28 chr1 96834883 96836360 -145827993 - L1MA8 LINE L1 -723 5568 4114 2222 126 0 0 chr1 96836684 96836978 -145827375 + AluSg SINE Alu 1 294 -16 714 274 100 24 chr1 96836991 96837450 -145826903 + L1ME4a LINE L1 5493 5986 -135 332 314 70 67 chr1 96838026 96838456 -145825897 - MLT1K LTR MaLR -18 570 140 2437 85 0 3 chr1 96838974 96839280 -145825073 - AluY SINE Alu -6 305 1 1235 166 55 107 chr1 96839364 96839749 -145824604 - MLT1A1 LTR MaLR 0 365 1 985 260 39 21 chr1 96839908 96840243 -145824110 - MARNA DNA Mariner -167 419 79 225 65 0 0 chr1 96840267 96840298 -145824055 + (TG)n Simple_repeat Simple_repeat 2 32 0 2207 80 0 45 chr1 96840736 96841049 -145823304 + AluSc SINE Alu 1 299 -10 346 242 67 87 chr1 96841403 96841552 -145822801 + MIR SINE MIR 7 152 -110 241 260 137 14 chr1 96842513 96842586 -145821767 + L2 LINE L2 3191 3272 0 218 261 102 0 chr1 96844082 96844170 -145820183 + MIR SINE MIR 30 126 -82 485 119 0 12 chr1 96844304 96844388 -145819965 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 1759 161 3 13 chr1 96844843 96845141 -145819212 - AluJb SINE Alu -13 299 5 1749 176 0 23 chr1 96845166 96845467 -145818886 - AluJo SINE Alu -18 294 1 434 260 169 26 chr1 96845865 96846019 -145818334 - MER5B DNA MER1_type 0 178 3 342 250 13 0 chr1 96846093 96846169 -145818184 - MER81 DNA DNA -36 78 2 2291 85 0 29 chr1 96846186 96846493 -145817860 - AluSc SINE Alu -11 298 1 1168 153 0 6 chr1 96846785 96846962 -145817391 - AluSx SINE Alu -16 296 121 2040 136 7 7 chr1 96847086 96847396 -145816957 + AluSq SINE Alu 1 310 -3 48 53 0 0 chr1 96847860 96847936 -145816417 + AT_rich Low_complexity Low_complexity 1 76 0 1582 199 43 32 chr1 96848553 96849235 -145815118 - L1M3 LINE L1 -523 5657 4967 21 21 0 64 chr1 96849532 96849579 -145814774 + AT_rich Low_complexity Low_complexity 1 44 0 768 110 28 0 chr1 96851200 96851309 -145813044 - AluSx SINE Alu -200 112 1 645 289 25 0 chr1 96852111 96852315 -145812038 + L2 LINE L2 878 1086 -2228 242 278 28 14 chr1 96852329 96852401 -145811952 + L2 LINE L2 2684 2756 -558 486 295 58 68 chr1 96852523 96853173 -145811180 + L1ME3 LINE L1 683 1326 -4879 280 325 62 4 chr1 96853193 96853436 -145810917 + L1ME3 LINE L1 1341 1597 -4618 2320 89 0 13 chr1 96853437 96853740 -145810613 + AluY SINE Alu 1 299 -12 376 316 62 56 chr1 96853902 96854260 -145810093 + L1ME3 LINE L1 1848 2207 -4189 508 215 47 0 chr1 96854310 96854482 -145809871 + L1ME3 LINE L1 2252 2431 -3784 2307 98 13 3 chr1 96855158 96855465 -145808888 - AluSx SINE Alu -2 310 1 2342 82 16 0 chr1 96855488 96855794 -145808559 - AluY SINE Alu 0 311 1 813 169 0 0 chr1 96855813 96855931 -145808422 - FLAM_C SINE Alu -15 118 1 301 285 95 7 chr1 96856384 96856521 -145807832 - MIR SINE MIR -51 211 63 413 347 81 17 chr1 96858550 96858959 -145805394 + MLT1K LTR MaLR 148 582 -6 600 219 46 39 chr1 96861175 96861435 -145802918 + L1ME3 LINE L1 5039 5300 -915 267 246 0 23 chr1 96861443 96861573 -145802780 + (TA)n Simple_repeat Simple_repeat 2 128 0 624 219 53 39 chr1 96861575 96861816 -145802537 + L1ME3 LINE L1 5289 5536 -695 3561 135 56 87 chr1 96861821 96861987 -145802366 + LTR1 LTR ERV1 12 181 -604 2197 84 37 0 chr1 96861987 96862283 -145802070 + AluSc SINE Alu 1 307 -2 3561 135 56 87 chr1 96862283 96862914 -145801439 + LTR1 LTR ERV1 181 785 0 1642 253 85 18 chr1 96862914 96863129 -145801224 + L1ME3 LINE L1 5525 5724 -507 180 0 0 0 chr1 96863129 96863149 -145801204 + (CA)n Simple_repeat Simple_repeat 1 20 0 1642 253 85 18 chr1 96863149 96863594 -145800759 + L1ME3 LINE L1 5724 6229 -2 1987 100 52 0 chr1 96863877 96864169 -145800184 + AluY SINE Alu 1 306 0 1247 120 6 0 chr1 96864176 96864351 -145800002 + AluSg/x SINE Alu 127 302 -10 2469 83 3 0 chr1 96865199 96865500 -145798853 + AluSp SINE Alu 1 302 -11 238 373 133 0 chr1 96865969 96866127 -145798226 + MIR3 SINE MIR 19 197 -11 2864 158 0 16 chr1 96866314 96866613 -145797740 - MER66B LTR ERV1 0 486 197 2329 114 28 19 chr1 96866613 96866974 -145797379 + THE1B LTR MaLR 1 364 0 2864 158 0 16 chr1 96866974 96867168 -145797185 - MER66B LTR ERV1 -289 197 1 293 359 92 7 chr1 96867785 96867927 -145796426 + L3 LINE CR1 220 373 -1204 207 203 0 38 chr1 96868090 96868146 -145796207 + MIR SINE MIR 100 152 -61 558 242 9 64 chr1 96868149 96868368 -145795985 - MER112 DNA MER1_type -2 258 52 5444 151 11 41 chr1 96868368 96869513 -145794840 + pTR5 LTR ERV1 57 274 -440 301 274 10 0 chr1 96869513 96869615 -145794738 + LTR30 LTR ERV1 541 643 -79 1447 104 45 0 chr1 96869620 96869840 -145794513 + LTR12 LTR ERV1 485 714 0 2464 63 3 31 chr1 96869987 96870306 -145794047 - AluY SINE Alu -1 310 1 4000 125 55 75 chr1 96870739 96871540 -145792813 + LTR1 LTR ERV1 1 785 0 734 271 49 34 chr1 96871820 96872068 -145792285 - L1ME LINE L1 -520 5650 5392 2061 110 79 0 chr1 96872068 96872358 -145791995 - AluSq SINE Alu 0 313 1 734 271 49 34 chr1 96872358 96872496 -145791857 - L1ME LINE L1 -778 5392 5258 1574 199 59 11 chr1 96872519 96872876 -145791477 - MLT1A2 LTR MaLR 0 374 1 794 309 78 64 chr1 96873004 96873364 -145790989 - L1ME LINE L1 -1094 5052 4678 1960 133 3 50 chr1 96873364 96873681 -145790672 - AluSx SINE Alu -8 304 3 794 309 78 64 chr1 96873681 96873965 -145790388 - L1ME LINE L1 -1468 4678 4399 198 71 0 0 chr1 96874007 96874035 -145790318 + (GA)n Simple_repeat Simple_repeat 2 29 0 291 222 0 56 chr1 96874248 96874338 -145790015 - L1ME LINE L1 -1999 4147 4063 559 296 106 34 chr1 96874358 96875146 -145789207 - L1ME LINE L1 -2203 3943 3214 1056 181 41 27 chr1 96875146 96875367 -145788986 - MER58A DNA MER1_type 0 224 1 5648 196 72 16 chr1 96875367 96876678 -145787675 + Charlie1a DNA MER1_type 5 1398 -1363 2099 136 0 3 chr1 96876678 96876973 -145787380 - AluSg SINE Alu -16 294 1 5648 196 72 16 chr1 96876973 96877035 -145787318 + Charlie1a DNA MER1_type 1398 1455 0 559 296 106 34 chr1 96877035 96877223 -145787130 - L1ME LINE L1 -2931 3215 2895 635 299 28 16 chr1 96878209 96878463 -145785890 - MIR SINE MIR -5 257 1 2158 113 0 13 chr1 96878505 96878806 -145785547 - AluSg SINE Alu -13 297 1 524 294 55 0 chr1 96880257 96880446 -145783907 + MIR SINE MIR 6 201 -61 380 160 107 46 chr1 96880713 96880844 -145783509 + L1ME4a LINE L1 5982 6120 -1 291 294 145 45 chr1 96880893 96881114 -145783239 - MIR SINE MIR 0 262 20 417 275 0 88 chr1 96881204 96881375 -145782978 + MIR3 SINE MIR 4 159 -49 231 167 0 0 chr1 96882959 96883001 -145781352 + CT-rich Low_complexity Low_complexity 2 43 0 273 351 63 23 chr1 96884843 96885017 -145779336 + MIR SINE MIR 23 203 -59 1956 148 30 7 chr1 96885806 96886111 -145778242 + AluSx SINE Alu 1 312 0 2527 77 0 0 chr1 96886114 96886425 -145777928 + AluY SINE Alu 1 311 0 218 272 175 29 chr1 96886481 96886577 -145777776 - L2 LINE L2 0 3313 3200 192 77 0 0 chr1 96886577 96886603 -145777750 + (CA)n Simple_repeat Simple_repeat 2 27 0 754 226 154 23 chr1 96886909 96887130 -145777223 + MIR SINE MIR 11 260 -2 1361 230 42 21 chr1 96887137 96887516 -145776837 + MLT1B LTR MaLR 1 387 -3 262 290 159 21 chr1 96887962 96888181 -145776172 + MIR3 SINE MIR 11 252 -10 271 338 26 33 chr1 96889881 96890032 -145774321 - MIR SINE MIR -93 169 20 411 21 0 0 chr1 96891175 96891223 -145773130 + (TG)n Simple_repeat Simple_repeat 2 49 0 837 306 59 6 chr1 96891895 96892215 -145772138 - MER46C DNA MER2_type 0 338 2 2421 125 50 22 chr1 96892268 96892684 -145771669 - MSTA LTR MaLR 0 428 1 685 268 102 36 chr1 96892802 96893164 -145771189 + MLT1D LTR MaLR 120 505 0 985 178 68 14 chr1 96893164 96893535 -145770818 + MLT1D-int LTR MaLR 1 489 -16 391 286 41 20 chr1 96893640 96893787 -145770566 + MIR SINE MIR 107 256 -6 621 172 0 0 chr1 96894483 96894582 -145769771 - FRAM SINE Alu -77 99 1 203 291 52 97 chr1 96895000 96895134 -145769219 + MIR3 SINE MIR 15 142 -66 2435 112 25 6 chr1 96895154 96895519 -145768834 + THE1C LTR MaLR 4 375 0 777 243 131 0 chr1 96895587 96895793 -145768560 + MIR SINE MIR 9 241 -21 180 185 0 0 chr1 96896480 96896507 -145767846 + L2 LINE L2 3211 3237 -35 265 328 148 39 chr1 96896507 96896845 -145767508 + L2 LINE L2 1994 2368 -946 1837 139 41 30 chr1 96896846 96897184 -145767169 + THE1B LTR MaLR 1 342 -22 1474 196 112 5 chr1 96897530 96898084 -145766269 - L1MC4 LINE L1 -460 7582 6879 495 282 101 39 chr1 96898095 96898808 -145765545 - L1MEc LINE L1 -4764 1632 876 263 211 0 0 chr1 96899684 96899741 -145764612 - MER116 DNA Mariner -2 78 22 2180 98 0 0 chr1 96899904 96900178 -145764175 + AluSc SINE Alu 4 277 -32 7121 48 6 5 chr1 96900184 96901333 -145763020 + L1PA5 LINE L1 5000 6149 -5 294 29 0 0 chr1 96901371 96901406 -145762947 + (CA)n Simple_repeat Simple_repeat 2 36 0 848 189 42 19 chr1 96901695 96901907 -145762446 - MER96B DNA MER1_type? -198 219 3 254 218 0 36 chr1 96902258 96902313 -145762040 + polypurine Low_complexity Low_complexity 3 55 0 1697 179 40 17 chr1 96902454 96902807 -145761546 - THE1C LTR MaLR 0 375 15 261 0 0 0 chr1 96902982 96903011 -145761342 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1299 185 77 15 chr1 96903021 96903280 -145761073 - AluJo SINE Alu -37 275 1 297 282 89 0 chr1 96903289 96903537 -145760816 - L1M3c LINE L1 -3642 2573 2304 323 298 101 43 chr1 96903873 96904184 -145760169 - L1M3c LINE L1 -4542 1604 1255 25 31 0 0 chr1 96905297 96905329 -145759024 + AT_rich Low_complexity Low_complexity 1 32 0 285 298 146 18 chr1 96906283 96906454 -145757899 + MIR SINE MIR 49 241 -21 1316 160 134 36 chr1 96906665 96906940 -145757413 - AluJo SINE Alu -10 302 1 518 310 60 19 chr1 96907010 96907226 -145757127 + MIR SINE MIR 10 234 -28 332 290 65 19 chr1 96907510 96907617 -145756736 + L2 LINE L2 3192 3303 -10 2320 93 3 3 chr1 96907674 96907975 -145756378 - AluSc SINE Alu -8 301 1 23 86 0 0 chr1 96908000 96908058 -145756295 + AT_rich Low_complexity Low_complexity 1 58 0 707 197 120 72 chr1 96908731 96908939 -145755414 - MER20 DNA MER1_type 0 219 2 471 210 17 50 chr1 96908948 96909067 -145755286 + L2 LINE L2 3193 3307 -6 2047 144 3 0 chr1 96909135 96909441 -145754912 + AluJb SINE Alu 1 307 -5 291 85 0 0 chr1 96909683 96909730 -145754623 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 344 262 152 14 chr1 96910642 96910787 -145753566 + MIR SINE MIR 14 178 -84 2209 167 17 0 chr1 96911320 96911679 -145752674 + MLT1A1 LTR MaLR 1 365 0 213 228 215 0 chr1 96912211 96912290 -145752063 + L2 LINE L2 2564 2659 -655 270 301 89 16 chr1 96912621 96912744 -145751609 + L2 LINE L2 2722 2853 -461 335 337 11 0 chr1 96912942 96913037 -145751316 + L2 LINE L2 3145 3240 -32 743 248 26 96 chr1 96913126 96913268 -145751085 + MER93b LTR ERV1 61 148 -225 2349 70 0 3 chr1 96913268 96913582 -145750771 + AluY SINE Alu 1 313 0 743 248 26 96 chr1 96913582 96913778 -145750575 + MER93b LTR ERV1 148 356 -17 854 203 47 5 chr1 96913885 96914077 -145750276 + MER3 DNA MER1_type 9 208 -1 772 202 34 39 chr1 96914161 96914369 -145749984 - MER3 DNA MER1_type 0 209 3 198 103 0 0 chr1 96915393 96915422 -145748931 + (TTC)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr1 96918242 96918271 -145746082 + AT_rich Low_complexity Low_complexity 1 29 0 368 352 135 5 chr1 96919548 96919741 -145744612 - L2 LINE L2 0 3272 3055 23 33 0 0 chr1 96919874 96919904 -145744449 + AT_rich Low_complexity Low_complexity 1 30 0 742 258 89 0 chr1 96919945 96920170 -145744183 - MIR SINE MIR -2 260 16 430 366 67 12 chr1 96920912 96921280 -145743073 + L1ME LINE L1 5413 5801 -320 49 0 0 0 chr1 96922775 96922824 -145741529 + AT_rich Low_complexity Low_complexity 1 49 0 227 305 160 30 chr1 96922925 96923056 -145741297 - MIR3 SINE MIR -52 156 9 269 159 0 14 chr1 96923156 96923225 -145741128 + GA-rich Low_complexity Low_complexity 4 71 0 3313 265 70 22 chr1 96923451 96923515 -145740838 + L1MEc LINE L1 2025 2084 -4131 2113 96 3 31 chr1 96923515 96923832 -145740521 + AluY SINE Alu 1 309 0 3313 265 70 22 chr1 96923832 96925599 -145738754 + L1MEc LINE L1 2084 3919 -2296 455 73 15 0 chr1 96925601 96925669 -145738684 + MER41A LTR ERV1 398 466 -88 422 223 6 25 chr1 96925674 96925831 -145738522 + L1MEc LINE L1 3908 4061 -2154 1162 145 32 54 chr1 96927070 96927291 -145737062 + AluJb SINE Alu 86 301 -11 342 191 67 67 chr1 96927419 96927492 -145736861 + L2 LINE L2 3180 3255 -17 16187 138 27 15 chr1 96927492 96930108 -145734245 + Tigger2 DNA MER2_type 1 2651 -67 2291 59 7 7 chr1 96930108 96930398 -145733955 + AluSc SINE Alu 1 290 -19 16187 138 27 15 chr1 96930398 96930466 -145733887 + Tigger2 DNA MER2_type 2651 2717 -1 342 191 67 67 chr1 96930466 96930481 -145733872 + L2 LINE L2 3254 3268 -4 370 385 72 12 chr1 96931787 96932036 -145732317 + L2 LINE L2 2915 3178 -94 1438 152 11 102 chr1 96932041 96932145 -145732208 + L1MC1 LINE L1 5594 5706 -627 1540 221 24 0 chr1 96932145 96932259 -145732094 + AluJo SINE Alu 1 111 -201 198 0 0 0 chr1 96932259 96932281 -145732072 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 1540 221 24 0 chr1 96932281 96932464 -145731889 + AluJo SINE Alu 111 305 -7 1438 152 11 102 chr1 96932464 96932556 -145731797 + L1MC1 LINE L1 5706 5805 -528 2167 125 19 33 chr1 96932556 96932924 -145731429 - THE1B LTR MaLR -1 363 1 1438 152 11 102 chr1 96932924 96933088 -145731265 + L1MC1 LINE L1 5805 5922 -411 2783 123 20 11 chr1 96933089 96933536 -145730817 - Tigger2 DNA MER2_type 0 2718 2268 26 50 0 0 chr1 96933552 96933592 -145730761 + AT_rich Low_complexity Low_complexity 1 40 0 2057 134 7 3 chr1 96933606 96933911 -145730442 + AluSq SINE Alu 1 306 -7 330 75 45 0 chr1 96933932 96933999 -145730354 + (TA)n Simple_repeat Simple_repeat 1 70 0 207 0 0 0 chr1 96933998 96934021 -145730332 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 1781 156 29 34 chr1 96934022 96934401 -145729952 + L1MB2 LINE L1 5786 6162 -9 584 282 114 58 chr1 96934425 96934450 -145729903 + L1MC/D LINE L1 3760 3782 -2364 2250 108 0 7 chr1 96934450 96934755 -145729598 + AluSc SINE Alu 1 303 -6 584 282 114 58 chr1 96934755 96935199 -145729154 + L1MC/D LINE L1 3782 4199 -1947 2129 113 0 0 chr1 96935199 96935517 -145728836 + AluY SINE Alu 1 318 0 584 282 114 58 chr1 96935517 96935702 -145728651 + L1MC/D LINE L1 4199 4372 -1774 663 199 8 0 chr1 96935702 96935833 -145728520 - FLAM_C SINE Alu 0 133 2 584 282 114 58 chr1 96935833 96935897 -145728456 + L1MC/D LINE L1 4372 4431 -1715 1484 175 56 4 chr1 96935897 96936199 -145728154 + AluJb SINE Alu 1 316 0 584 282 114 58 chr1 96936199 96936796 -145727557 + L1MC/D LINE L1 4431 5176 -970 2008 149 24 0 chr1 96936796 96937092 -145727261 + AluJb SINE Alu 5 307 -5 584 282 114 58 chr1 96937092 96937256 -145727097 + L1MC/D LINE L1 5176 5329 -817 324 265 141 24 chr1 96937342 96937482 -145726871 + L1MC/D LINE L1 5384 5506 -656 3138 128 46 36 chr1 96937482 96938004 -145726349 + MER1A DNA MER1_type 1 527 0 324 265 141 24 chr1 96938004 96938142 -145726211 + L1MC/D LINE L1 5506 5702 -460 367 304 45 0 chr1 96938143 96938255 -145726098 + L2 LINE L2 3180 3296 -17 354 179 15 0 chr1 96940080 96940147 -145724206 - MIR SINE MIR -96 166 99 558 240 5 66 chr1 96940413 96940609 -145723744 + L2 LINE L2 3085 3268 -45 262 319 118 17 chr1 96940665 96940784 -145723569 - MIR3 SINE MIR -68 140 10 26 0 0 0 chr1 96941122 96941148 -145723205 + AT_rich Low_complexity Low_complexity 1 26 0 523 229 25 8 chr1 96941517 96941635 -145722718 - MIR SINE MIR -109 153 34 484 303 115 17 chr1 96942290 96942524 -145721829 - MIR SINE MIR -1 261 5 278 349 98 66 chr1 96943791 96944366 -145719987 - L2 LINE L2 -240 3032 2453 263 323 43 37 chr1 96944607 96944768 -145719585 - L2 LINE L2 -879 2435 2274 314 80 20 0 chr1 96945805 96945855 -145718498 + (TC)n Simple_repeat Simple_repeat 2 52 0 318 50 0 0 chr1 96945861 96945901 -145718452 + (TG)n Simple_repeat Simple_repeat 2 41 0 410 266 151 26 chr1 96945912 96946104 -145718249 - MIR SINE MIR 0 262 47 465 199 163 54 chr1 96946168 96946334 -145718019 + MIR SINE MIR 66 249 -13 180 152 0 0 chr1 96948080 96948113 -145716240 + GA-rich Low_complexity Low_complexity 2 34 0 553 294 0 0 chr1 96948663 96948809 -145715544 - MIR SINE MIR -28 234 89 1981 136 0 3 chr1 96948825 96949135 -145715218 - AluSx SINE Alu 0 309 1 324 182 0 30 chr1 96950409 96950475 -145713878 - MIR SINE MIR -20 242 179 241 180 82 66 chr1 96951439 96951500 -145712853 - MIR SINE MIR -90 172 111 358 276 76 9 chr1 96952552 96952657 -145711696 - L2 LINE L2 -9 3304 3193 971 287 64 10 chr1 96952852 96953256 -145711097 + LTR33 LTR ERVL 96 521 0 2372 70 3 19 chr1 96953403 96953719 -145710634 - AluY SINE Alu 0 311 1 2906 136 36 8 chr1 96953756 96954256 -145710097 - L1MB1 LINE L1 -1 6167 5654 2203 243 33 26 chr1 96954309 96954882 -145709471 + MLT2F LTR ERVL 24 600 -63 270 143 0 0 chr1 96955071 96955120 -145709233 + (CA)n Simple_repeat Simple_repeat 2 50 0 1612 198 88 68 chr1 96955425 96955914 -145708439 + MLT2B1 LTR ERVL 10 508 -7 2416 43 0 4 chr1 96956574 96956854 -145707499 + AluY SINE Alu 17 295 -16 2372 97 0 0 chr1 96956864 96957162 -145707191 + AluY SINE Alu 1 298 -13 630 303 56 77 chr1 96957313 96957847 -145706506 + HAL1 LINE L1 958 1480 -1027 237 292 67 22 chr1 96958039 96958128 -145706225 + L2 LINE L2 3160 3252 -20 227 335 145 26 chr1 96958434 96958661 -145705692 - L2 LINE L2 -182 3090 2837 243 152 0 0 chr1 96959078 96959124 -145705229 + (CATA)n Simple_repeat Simple_repeat 3 48 0 4100 162 14 34 chr1 96960254 96960711 -145703642 - L1MB2 LINE L1 -7 6164 5729 2088 141 3 13 chr1 96960711 96961016 -145703337 - AluSx SINE Alu -10 302 1 4100 162 14 34 chr1 96961016 96961384 -145702969 - L1MB2 LINE L1 -442 5729 5355 21 0 0 0 chr1 96961515 96961536 -145702817 + AT_rich Low_complexity Low_complexity 1 21 0 313 375 44 6 chr1 96962986 96963146 -145701207 - L2 LINE L2 -5 3267 3102 279 194 0 155 chr1 96963395 96963524 -145700829 - MIR SINE MIR -10 252 144 835 188 25 6 chr1 96963524 96963684 -145700669 - AluJb SINE Alu -13 299 137 348 217 130 26 chr1 96963688 96963803 -145700550 - MIR SINE MIR -115 147 21 331 271 72 11 chr1 96964056 96964219 -145700134 + MIR SINE MIR 12 182 -80 755 215 36 87 chr1 96964606 96964825 -145699528 + MER20 DNA MER1_type 1 208 -11 1750 140 45 31 chr1 96964848 96965204 -145699149 + THE1C LTR MaLR 1 361 -14 2347 32 0 4 chr1 96965204 96965483 -145698870 + L1PA3 LINE L1 5875 6152 -3 26 0 0 0 chr1 96965483 96965509 -145698844 + AT_rich Low_complexity Low_complexity 1 26 0 993 266 51 75 chr1 96965830 96966360 -145697993 - LTR33A LTR ERVL -2 521 5 33 80 0 0 chr1 96966432 96966507 -145697846 + AT_rich Low_complexity Low_complexity 1 75 0 536 259 43 19 chr1 96967802 96967964 -145696389 - MIR3 SINE MIR -7 201 36 731 236 50 46 chr1 96968106 96968347 -145696006 + MIR SINE MIR 3 244 -18 735 262 39 5 chr1 96969575 96969781 -145694572 + MIR SINE MIR 16 228 -34 1417 228 136 28 chr1 96969950 96969984 -145694369 - L2 LINE L2 -179 3134 3105 2166 117 0 25 chr1 96969984 96970301 -145694052 + AluSg1 SINE Alu 1 309 0 1417 228 136 28 chr1 96970301 96970879 -145693474 - L2 LINE L2 -208 3105 2445 1415 205 53 18 chr1 96970890 96971227 -145693126 - MLT2B1 LTR ERVL -171 349 1 219 222 37 0 chr1 96974323 96974404 -145689949 + (TA)n Simple_repeat Simple_repeat 1 84 0 471 35 0 0 chr1 96975085 96975142 -145689211 + (TG)n Simple_repeat Simple_repeat 1 57 0 200 402 10 10 chr1 96975625 96975727 -145688626 + MIR SINE MIR 40 141 -67 278 284 29 106 chr1 96975789 96975997 -145688356 + MIR SINE MIR 15 206 -56 21 0 0 0 chr1 96976029 96976050 -145688303 + AT_rich Low_complexity Low_complexity 1 21 0 2341 196 105 63 chr1 96978144 96978937 -145685416 + LTR1B LTR ERV1 1 826 0 468 315 87 23 chr1 96979886 96980105 -145684248 + MIR SINE MIR 12 244 -18 199 89 0 44 chr1 96980397 96980442 -145683911 + (GAAAA)n Simple_repeat Simple_repeat 1 43 0 761 275 59 18 chr1 96980761 96980983 -145683370 - MIR SINE MIR -2 260 30 353 236 85 47 chr1 96980990 96981096 -145683257 + MER91C DNA MER1_type 1 110 -30 2583 58 3 0 chr1 96983749 96984058 -145680295 + AluY SINE Alu 1 310 -1 815 124 0 7 chr1 96985175 96985312 -145679041 + (TTCC)n Simple_repeat Simple_repeat 3 138 0 387 149 53 88 chr1 96985893 96986007 -145678346 - MIR SINE MIR -17 245 136 202 220 0 0 chr1 96986023 96986073 -145678280 + (TAA)n Simple_repeat Simple_repeat 3 52 0 780 304 36 16 chr1 96986073 96986323 -145678030 - MIR SINE MIR 0 262 8 527 305 105 31 chr1 96986399 96986789 -145677564 + L2 LINE L2 2895 3313 0 210 182 0 23 chr1 96987587 96987631 -145676722 + GA-rich Low_complexity Low_complexity 2 44 0 688 251 97 18 chr1 96987721 96987948 -145676405 - MIR SINE MIR -15 247 3 2456 70 3 6 chr1 96988155 96988467 -145675886 + AluY SINE Alu 1 311 0 2040 149 0 0 chr1 96988535 96988837 -145675516 - AluSx SINE Alu -10 302 1 1448 157 42 11 chr1 96988887 96989149 -145675204 + L1MC1 LINE L1 6064 6333 0 284 227 40 40 chr1 96990782 96990857 -145673496 + L2 LINE L2 3195 3269 -3 228 111 0 0 chr1 96994192 96994228 -145670125 + (CATA)n Simple_repeat Simple_repeat 4 39 0 28 29 0 0 chr1 96994320 96994355 -145669998 + AT_rich Low_complexity Low_complexity 1 35 0 2378 86 0 3 chr1 96994772 96995076 -145669277 + AluY SINE Alu 1 303 -8 1748 206 7 0 chr1 96995086 96995396 -145668957 + AluJb SINE Alu 1 312 0 371 322 14 10 chr1 96995398 96995606 -145668747 + L1ME4a LINE L1 5724 5932 -189 434 155 0 12 chr1 96996140 96996224 -145668129 + CT-rich Low_complexity Low_complexity 3 85 0 218 356 69 0 chr1 96996240 96996341 -145668012 - L2 LINE L2 -23 3290 3183 186 217 11 22 chr1 96996598 96996690 -145667663 + GA-rich Low_complexity Low_complexity 1 91 0 240 319 125 65 chr1 96996722 96997001 -145667352 - L2 LINE L2 -354 2960 2665 342 321 145 9 chr1 96997178 96997394 -145666959 + MIR SINE MIR 9 243 -19 21 0 0 0 chr1 96998374 96998395 -145665958 + AT_rich Low_complexity Low_complexity 1 21 0 379 308 0 8 chr1 96999064 96999181 -145665172 + L2 LINE L2 3198 3313 0 2410 61 0 7 chr1 96999449 96999746 -145664607 + AluY SINE Alu 1 295 -16 330 357 82 63 chr1 96999778 97000190 -145664163 + L1ME LINE L1 2 421 -5698 229 335 89 34 chr1 97000194 97000430 -145663923 + L1ME LINE L1 438 686 -5433 276 30 0 0 chr1 97000832 97000865 -145663488 + (TA)n Simple_repeat Simple_repeat 2 34 0 1804 277 126 46 chr1 97001101 97001929 -145662424 + L1ME LINE L1 2864 3624 -2505 186 43 0 0 chr1 97001929 97001952 -145662401 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1804 277 126 46 chr1 97001952 97003175 -145661178 + L1ME LINE L1 3624 5079 -1050 405 276 81 34 chr1 97003272 97003597 -145660756 + L1P5 LINE L1 5258 5599 -552 910 203 31 4 chr1 97003668 97003895 -145660458 + Charlie1 DNA MER1_type 2351 2583 -178 1298 203 40 37 chr1 97003914 97004235 -145660118 - MLT1A1 LTR MaLR -41 324 3 693 223 5 27 chr1 97004237 97004425 -145659928 + Charlie1 DNA MER1_type 2578 2761 0 301 238 50 0 chr1 97004522 97004602 -145659751 + L1ME LINE L1 5708 5791 -354 520 97 0 23 chr1 97004999 97005099 -145659254 - L1MA8 LINE L1 -131 6160 6079 236 233 33 17 chr1 97005167 97005227 -145659126 + GA-rich Low_complexity Low_complexity 6 66 0 373 333 75 36 chr1 97006928 97007180 -145657173 + MIR SINE MIR 1 262 0 274 298 155 22 chr1 97007345 97007526 -145656827 - MIR SINE MIR -12 250 46 1983 246 20 18 chr1 97007819 97008373 -145655980 + L1MB8 LINE L1 5615 6169 -9 24 53 0 0 chr1 97008565 97008603 -145655750 + AT_rich Low_complexity Low_complexity 1 38 0 573 55 0 0 chr1 97009563 97009636 -145654717 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 1705 125 0 12 chr1 97009637 97009893 -145654460 - AluSx SINE Alu -26 286 34 432 0 0 0 chr1 97010521 97010569 -145653784 + (TG)n Simple_repeat Simple_repeat 2 49 0 509 283 128 22 chr1 97011320 97011703 -145652650 - Charlie8 DNA MER1_type -12 2405 97 2228 114 3 0 chr1 97011724 97012031 -145652322 + AluSg SINE Alu 1 308 -2 199 366 12 0 chr1 97012218 97012300 -145652053 + L3 LINE CR1 1279 1361 -216 607 330 69 0 chr1 97012604 97012822 -145651531 + MIR SINE MIR 25 257 -5 289 323 0 0 chr1 97012937 97012999 -145651354 + L2 LINE L2 3147 3208 -64 403 267 0 35 chr1 97014392 97014508 -145649845 + MER5A DNA MER1_type 1 112 -77 290 256 100 11 chr1 97014497 97014587 -145649766 + L2 LINE L2 3173 3270 -2 * 187 301 108 104 chr1 97016807 97017056 -145647297 - MIR SINE MIR -11 251 2 317 254 0 0 chr1 97017419 97017486 -145646867 + L2 LINE L2 3202 3268 -4 261 306 63 18 chr1 97019724 97019835 -145644518 + L2 LINE L2 3141 3256 -16 340 292 149 15 chr1 97023025 97023220 -145641133 - MIR SINE MIR -40 222 2 384 314 113 16 chr1 97023824 97023948 -145640405 - L2 LINE L2 -4 3268 3133 473 175 49 88 chr1 97025673 97025891 -145638462 + MER69 DNA AcHobo 2251 2526 0 193 288 80 90 chr1 97026039 97026251 -145638102 + L2 LINE L2 2393 2602 -712 26 64 0 0 chr1 97026361 97026408 -145637945 + AT_rich Low_complexity Low_complexity 1 47 0 297 75 0 0 chr1 97026834 97026874 -145637479 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 288 334 184 22 chr1 97027076 97027435 -145636918 - L2 LINE L2 -40 3232 2816 536 255 28 67 chr1 97030949 97031204 -145633149 + MER112 DNA MER1_type 15 259 -1 491 219 65 22 chr1 97031222 97031381 -145632972 - MIR SINE MIR -4 258 15 304 306 67 108 chr1 97031722 97031990 -145632363 + L2 LINE L2 2818 3074 -198 32 0 0 0 chr1 97032572 97032604 -145631749 + AT_rich Low_complexity Low_complexity 1 32 0 685 283 101 7 chr1 97032789 97033097 -145631256 - MLT2C1 LTR ERVL 0 397 61 9598 193 38 30 chr1 97033125 97035216 -145629137 - ERVL-C1 LTR ERVL -8 5756 3648 222 262 0 0 chr1 97035217 97035301 -145629052 + (TG)n Simple_repeat Simple_repeat 2 85 0 280 315 125 46 chr1 97036127 97036343 -145628010 - MIR SINE MIR -21 241 9 315 302 52 9 chr1 97036466 97036582 -145627771 + MIR SINE MIR 48 168 -94 440 323 16 0 chr1 97036874 97036998 -145627355 + MIR3 SINE MIR 73 198 -10 318 306 124 32 chr1 97039234 97039420 -145624933 - MIR SINE MIR -50 212 10 570 176 8 24 chr1 97039731 97039856 -145624497 + Charlie5 DNA MER1_type 1 123 -2489 1199 199 118 17 chr1 97039856 97040212 -145624141 + Charlie5 DNA MER1_type 2233 2624 0 487 216 40 24 chr1 97040521 97040646 -145623707 + LTR52-int LTR ERVL 1731 1857 -1699 953 233 47 24 chr1 97040658 97040954 -145623399 + LTR52 LTR ERVL 119 421 0 610 280 130 69 chr1 97040991 97041446 -145622907 - L1MEd LINE L1 -954 1536 1110 2179 102 0 0 chr1 97041446 97041730 -145622623 + AluY SINE Alu 14 297 -14 610 280 130 69 chr1 97041730 97041954 -145622399 - L1MEd LINE L1 -1380 1110 901 2392 80 3 0 chr1 97041954 97042253 -145622100 - AluSp SINE Alu -12 301 2 610 280 130 69 chr1 97042253 97042933 -145621420 - L1MEd LINE L1 -1589 901 2 210 150 0 0 chr1 97043976 97044016 -145620337 + (CA)n Simple_repeat Simple_repeat 2 41 0 183 365 96 9 chr1 97045832 97045947 -145618406 - L2 LINE L2 -10 3303 3179 2122 121 0 29 chr1 97045972 97046279 -145618074 + AluSx SINE Alu 3 300 -12 281 333 63 42 chr1 97046589 97046826 -145617527 - L2 LINE L2 -441 2873 2632 182 362 58 43 chr1 97047460 97047717 -145616636 + L2 LINE L2 2716 2976 -338 511 322 34 7 chr1 97047930 97048076 -145616277 + L2 LINE L2 3118 3267 -5 305 294 0 0 chr1 97049627 97049695 -145614658 + L2 LINE L2 3187 3254 -18 1332 201 51 61 chr1 97049775 97050169 -145614184 - MLT1B LTR MaLR 0 390 1 2235 120 13 0 chr1 97050210 97050519 -145613834 + AluSq SINE Alu 1 313 0 315 340 177 0 chr1 97050585 97050726 -145613627 + MIR3 SINE MIR 33 198 -10 277 256 8 103 chr1 97050902 97051019 -145613334 + L2 LINE L2 3204 3309 -4 2048 140 49 22 chr1 97051680 97052045 -145612308 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr1 97053226 97053247 -145611106 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chr1 97054561 97054605 -145609748 + AT_rich Low_complexity Low_complexity 1 44 0 29 60 0 0 chr1 97054766 97054816 -145609537 + AT_rich Low_complexity Low_complexity 1 50 0 754 156 0 0 chr1 97055334 97055475 -145608878 + MER53 DNA DNA 38 178 -11 198 0 0 0 chr1 97055550 97055572 -145608781 + (TG)n Simple_repeat Simple_repeat 2 23 0 192 373 127 0 chr1 97055601 97055711 -145608642 - L3 LINE CR1 -39 1538 1415 256 276 33 42 chr1 97055752 97055961 -145608392 - L3 LINE CR1 -257 1320 1143 814 245 179 70 chr1 97056157 97056586 -145607767 - L2 LINE L2 0 3313 2838 526 267 30 15 chr1 97157194 97157325 -145507028 - L2 LINE L2 -1 3271 3139 476 233 133 13 chr1 97157347 97157497 -145506856 - MLT1I LTR MaLR -5 404 237 322 210 34 84 chr1 97157529 97157648 -145506705 - MLT1I LTR MaLR -278 131 19 540 293 32 13 chr1 97157782 97157939 -145506414 - L2 LINE L2 -212 3060 2901 515 232 123 0 chr1 97157970 97158108 -145506245 + MIR SINE MIR 32 186 -76 195 184 0 0 chr1 97158394 97158432 -145505921 + GA-rich Low_complexity Low_complexity 1 38 0 556 320 124 0 chr1 97159432 97159657 -145504696 - MIR SINE MIR -1 261 9 245 299 22 60 chr1 97161017 97161151 -145503202 - L2 LINE L2 0 3272 3144 408 277 181 0 chr1 97161200 97161355 -145502998 - MIR SINE MIR -32 230 48 303 309 43 42 chr1 97161436 97161630 -145502723 - MIR SINE MIR -64 198 9 193 217 0 43 chr1 97161938 97161984 -145502369 + MIR SINE MIR 81 124 -138 318 254 134 15 chr1 97163139 97163273 -145501080 + MIR SINE MIR 56 205 -57 231 87 43 43 chr1 97163503 97163549 -145500804 - L3 LINE CR1 -2 1575 1530 357 62 0 0 chr1 97163669 97163717 -145500636 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 561 322 81 9 chr1 97163836 97164047 -145500306 - MIR SINE MIR -17 245 20 826 285 57 21 chr1 97164404 97164685 -145499668 + L2 LINE L2 3020 3310 -3 181 229 21 21 chr1 97165321 97165369 -145498984 + L2 LINE L2 61 108 -3206 270 143 0 0 chr1 97166595 97166644 -145497709 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr1 97166940 97166963 -145497390 + AT_rich Low_complexity Low_complexity 1 23 0 250 211 0 28 chr1 97167591 97167662 -145496691 + A-rich Low_complexity Low_complexity 4 72 0 4086 287 53 22 chr1 97167662 97169386 -145494967 + L1MEc LINE L1 134 1911 -4485 1477 194 115 30 chr1 97169386 97169751 -145494602 + MSTD LTR MaLR 1 396 0 236 81 0 0 chr1 97169779 97169816 -145494537 - MADE1 DNA Mariner -43 37 1 426 252 56 14 chr1 97169938 97170081 -145494272 - MER103 DNA DNA -6 160 12 545 246 6 14 chr1 97170250 97170417 -145493936 - L1MA10 LINE L1 -5 6320 5992 485 258 164 19 chr1 97170480 97170639 -145493714 - MER5A DNA MER1_type -4 185 4 225 0 0 0 chr1 97170974 97170999 -145493354 + (CAT)n Simple_repeat Simple_repeat 2 26 0 233 205 0 0 chr1 97172048 97172087 -145492266 - MLT1A2 LTR MaLR -14 360 322 1141 175 0 0 chr1 97172237 97172408 -145491945 - AluJb SINE Alu -33 279 109 821 187 7 7 chr1 97172912 97173067 -145491286 - MLT1D LTR MaLR 0 505 351 * 972 248 5 0 chr1 97173065 97173287 -145491066 + MLT1D LTR MaLR 283 505 0 436 250 180 8 chr1 97173330 97173458 -145490895 + MER5A DNA MER1_type 32 181 -8 419 278 114 0 chr1 97173994 97174170 -145490183 - L1MEd LINE L1 -1273 4856 4661 683 222 23 57 chr1 97174217 97174393 -145489960 + MER58B DNA MER1_type 172 341 0 285 151 0 0 chr1 97174393 97174446 -145489907 - L1MEd LINE L1 -1461 4668 4616 345 47 0 0 chr1 97174462 97174505 -145489848 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1168 96 13 0 chr1 97174508 97174664 -145489689 - AluSc SINE Alu -25 284 127 557 253 92 29 chr1 97174667 97174983 -145489370 - L1MEd LINE L1 -1555 4574 4239 3550 295 79 39 chr1 97174993 97178064 -145486289 - L1MEd LINE L1 -2191 3938 775 433 329 26 13 chr1 97179222 97179344 -145485009 - MIR3 SINE MIR -8 200 77 256 341 11 11 chr1 97179344 97179432 -145484921 + MIR SINE MIR 2 89 -173 410 331 40 17 chr1 97179494 97179669 -145484684 + MIR SINE MIR 84 262 0 195 265 0 20 chr1 97179866 97179915 -145484438 + L2 LINE L2 3221 3268 -4 218 274 179 0 chr1 97179969 97180053 -145484300 + L2 LINE L2 3174 3272 0 312 160 0 0 chr1 97180311 97180361 -145483992 - MLT1H LTR MaLR 0 549 500 357 233 0 12 chr1 97180424 97180510 -145483843 - MLT1H-int LTR MaLR -1276 95 11 642 260 118 73 chr1 97180515 97180923 -145483430 - MLT1H LTR MaLR -1 548 123 633 216 11 6 chr1 97181072 97181248 -145483105 + (TA)n Simple_repeat Simple_repeat 1 177 0 261 273 15 0 chr1 97181252 97181318 -145483035 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 263 231 0 11 chr1 97181474 97181656 -145482697 + G-rich Low_complexity Low_complexity 1 180 0 306 245 0 0 chr1 97181754 97181852 -145482501 + (TA)n Simple_repeat Simple_repeat 1 98 0 308 304 9 17 chr1 97181868 97181983 -145482370 + (TATATG)n Simple_repeat Simple_repeat 4 117 0 225 326 0 0 chr1 97181984 97182073 -145482280 + L1MC4 LINE L1 6615 6703 -1339 * 235 315 0 0 chr1 97182011 97182100 -145482253 - L1MC4 LINE L1 -1339 6703 6615 290 195 0 59 chr1 97182139 97182308 -145482045 + (TA)n Simple_repeat Simple_repeat 2 160 0 1720 150 104 0 chr1 97182601 97182928 -145481425 + MER46B DNA MER2_type 1 236 0 273 119 0 0 chr1 97183081 97183123 -145481230 + (CA)n Simple_repeat Simple_repeat 2 43 0 541 248 54 70 chr1 97183217 97183464 -145480889 + MIR SINE MIR 19 258 -4 1026 222 20 0 chr1 97183852 97184055 -145480298 - MIR SINE MIR -44 218 12 216 232 87 0 chr1 97183993 97184062 -145480291 + MIR SINE MIR 13 87 -175 * 307 322 0 0 chr1 97184156 97184243 -145480110 - MIR SINE MIR -112 150 64 280 192 0 0 chr1 97184472 97184524 -145479829 - L2 LINE L2 0 3313 3262 24 0 0 0 chr1 97186197 97186221 -145478132 + AT_rich Low_complexity Low_complexity 1 24 0 367 360 56 47 chr1 97188772 97189217 -145475136 - L2 LINE L2 -468 2846 2398 239 410 49 7 chr1 97189207 97189351 -145475002 + L3 LINE CR1 1425 1574 -3 * 255 291 154 0 chr1 97189348 97189458 -145474895 + L2 LINE L2 3182 3308 -5 380 328 128 48 chr1 97191351 97191748 -145472605 - L3b LINE CR1 -5 1578 1150 36 0 0 0 chr1 97191778 97191814 -145472539 + AT_rich Low_complexity Low_complexity 1 36 0 662 286 26 0 chr1 97191869 97192058 -145472295 + L1ME LINE L1 5490 5683 -438 441 0 0 0 chr1 97192069 97192118 -145472235 + (CA)n Simple_repeat Simple_repeat 2 50 0 392 315 54 73 chr1 97192158 97192418 -145471935 - MIR SINE MIR -5 257 3 283 157 22 152 chr1 97192434 97192612 -145471741 + L1ME4a LINE L1 5967 6121 0 234 0 0 0 chr1 97192668 97192694 -145471659 + (CA)n Simple_repeat Simple_repeat 1 26 0 548 205 90 0 chr1 97193260 97193382 -145470971 - L2 LINE L2 -4 3268 3136 238 340 164 42 chr1 97193372 97193951 -145470402 - L2 LINE L2 -468 2846 2197 * 499 313 48 82 chr1 97194374 97194477 -145469876 + L2 LINE L2 2565 2670 -602 1450 113 45 9 chr1 97194477 97194699 -145469654 + MER30 DNA MER1_type 1 230 0 499 313 48 82 chr1 97194699 97195319 -145469034 + L2 LINE L2 2670 3272 0 261 83 0 0 chr1 97195738 97195774 -145468579 + (TC)n Simple_repeat Simple_repeat 2 37 0 346 325 8 8 chr1 97196357 97196474 -145467879 + L2 LINE L2 2256 2372 -942 643 255 26 7 chr1 97196479 97196632 -145467721 + MIR SINE MIR 6 161 -101 928 275 33 0 chr1 97196826 97197066 -145467287 + MIR SINE MIR 15 262 0 347 290 169 0 chr1 97197324 97197448 -145466905 + MIR SINE MIR 20 164 -98 260 301 41 0 chr1 97197844 97197917 -145466436 + L2 LINE L2 3230 3305 -8 242 369 12 0 chr1 97198135 97198219 -145466134 + L2 LINE L2 2235 2319 -995 341 247 30 55 chr1 97198424 97198593 -145465760 - HAL1b LINE L1 -3 6118 1191 506 267 143 26 chr1 97198925 97199191 -145465162 - L1MC/D LINE L1 -1984 5824 5528 475 331 39 13 chr1 97199363 97199668 -145464685 - L1MC/D LINE L1 -1085 5061 4749 4259 192 49 7 chr1 97199759 97200657 -145463696 - L1MD2 LINE L1 0 6753 5716 3648 229 43 41 chr1 97200663 97201421 -145462932 - L1MD2 LINE L1 -1214 5326 4571 1829 153 130 18 chr1 97201421 97201806 -145462547 - MSTA LTR MaLR 0 428 1 3648 229 43 41 chr1 97201806 97202217 -145462136 - L1MD2 LINE L1 -1969 4571 4151 2402 95 10 0 chr1 97202217 97202523 -145461830 - AluSx SINE Alu -3 309 1 3648 229 43 41 chr1 97202523 97202569 -145461784 - L1MD2 LINE L1 -2389 4151 4107 2243 234 4 7 chr1 97202560 97203014 -145461339 + L1M2 LINE L1 8 460 -6389 * 661 207 0 0 chr1 97203013 97203129 -145461224 - L1MD2 LINE L1 -6055 485 370 * 624 219 130 118 chr1 97203130 97203492 -145460861 + MLT2D LTR ERVL 1 370 -44 285 51 0 0 chr1 97203492 97203531 -145460822 + (TG)n Simple_repeat Simple_repeat 2 40 0 624 219 130 118 chr1 97203531 97203575 -145460778 + MLT2D LTR ERVL 370 412 -2 724 251 18 6 chr1 97203575 97203746 -145460607 - L1MD2 LINE L1 -6170 370 198 681 200 8 0 chr1 97203752 97203882 -145460471 - L1MD2 LINE L1 -6409 131 1 190 313 90 0 chr1 97204014 97204081 -145460272 + L2 LINE L2 3227 3299 -14 330 268 119 95 chr1 97205118 97205361 -145458992 - L2 LINE L2 0 3313 3065 1258 105 0 0 chr1 97205378 97205569 -145458784 - L1MA6 LINE L1 0 6300 6110 491 310 37 11 chr1 97205769 97205956 -145458397 - L2 LINE L2 -233 3080 2889 2738 239 87 9 chr1 97205961 97206651 -145457702 + Zaphod DNA AcHobo 1 764 -3267 4459 130 9 1 chr1 97206651 97207337 -145457016 - L1PA15 LINE L1 -1 6164 5474 2738 239 87 9 chr1 97207337 97207453 -145456900 + Zaphod DNA AcHobo 764 870 -3161 940 200 64 44 chr1 97207500 97207750 -145456603 + Zaphod DNA AcHobo 3771 4025 -6 313 292 10 0 chr1 97207777 97207873 -145456480 - L2 LINE L2 -497 2817 2721 669 274 58 36 chr1 97208207 97208430 -145455923 + MIR SINE MIR 31 258 -4 282 355 78 21 chr1 97208529 97208670 -145455683 + L3 LINE CR1 1426 1574 -3 289 254 304 0 chr1 97209206 97209344 -145455009 + MER5A DNA MER1_type 9 188 -1 372 246 95 40 chr1 97209351 97209477 -145454876 + MER5B DNA MER1_type 1 133 -45 265 291 19 48 chr1 97209655 97209758 -145454595 + MIR SINE MIR 77 176 -86 919 300 30 33 chr1 97209840 97210203 -145454150 + L2 LINE L2 2952 3313 0 6639 133 14 4 chr1 97212411 97213445 -145450908 - L1MC1 LINE L1 -6 6327 5284 850 165 0 0 chr1 97213741 97213874 -145450479 - MSTD LTR MaLR 0 396 264 805 227 88 121 chr1 97213888 97214386 -145449967 - LTR8 LTR ERV1 0 727 246 976 220 28 5 chr1 97214728 97214942 -145449411 - MSTD LTR MaLR -177 219 1 811 353 36 12 chr1 97215571 97215982 -145448371 + L3b LINE CR1 1163 1583 0 537 288 113 0 chr1 97217399 97217559 -145446794 - MER45A DNA AcHobo 0 178 1 14345 128 29 29 chr1 97217869 97220282 -145444071 + Tigger1 DNA MER2_type 4 2418 0 388 309 27 0 chr1 97220593 97220703 -145443650 - MIR SINE MIR -148 114 2 217 265 147 0 chr1 97221191 97221259 -145443094 + MIR SINE MIR 47 124 -138 1011 251 76 0 chr1 97221397 97221620 -145442733 - MIR SINE MIR -5 257 18 321 322 86 28 chr1 97221692 97221947 -145442406 + L1MC/D LINE L1 5022 5291 -855 760 305 40 20 chr1 97221948 97222388 -145441965 + L1MC/D LINE L1 5273 5726 -395 207 0 0 0 chr1 97222388 97222411 -145441942 + (CAA)n Simple_repeat Simple_repeat 2 24 0 760 305 40 20 chr1 97222411 97222468 -145441885 + L1MC/D LINE L1 5726 5780 -341 913 175 100 30 chr1 97222484 97222684 -145441669 - Tigger2a DNA MER2_type -14 430 217 19351 164 41 9 chr1 97222692 97225838 -145438515 + L1MA2 LINE L1 19 3064 -4659 2366 71 43 0 chr1 97225838 97226161 -145438192 + L1PA13 LINE L1 5825 6161 -2 19351 164 41 9 chr1 97226161 97230484 -145433869 + L1MA2 LINE L1 3064 7723 0 1294 131 13 39 chr1 97230487 97230716 -145433637 - Tigger2a DNA MER2_type -211 223 1 237 266 38 0 chr1 97230734 97230813 -145433540 + L1MC/D LINE L1 5829 5910 -1898 1953 187 38 50 chr1 97231236 97231734 -145432619 + MLT1D LTR MaLR 9 500 -5 276 161 27 116 chr1 97231734 97231781 -145432572 - L1ME4a LINE L1 -39 6082 6032 2183 103 0 3 chr1 97231781 97232081 -145432272 + AluSx SINE Alu 1 299 -13 276 161 27 116 chr1 97232081 97232145 -145432208 - L1ME4a LINE L1 -89 6032 5981 3172 206 64 53 chr1 97232202 97233822 -145430531 - L1ME1 LINE L1 -5 6161 4520 289 274 80 44 chr1 97233918 97234031 -145430322 - L2 LINE L2 0 3313 3197 382 153 0 0 chr1 97234055 97234127 -145430226 - L1PB1 LINE L1 -2211 3935 3864 6201 168 9 13 chr1 97234127 97236341 -145428012 + L1PB1 LINE L1 3937 6143 -8 29 0 0 0 chr1 97236341 97236370 -145427983 + AT_rich Low_complexity Low_complexity 1 29 0 1320 152 26 0 chr1 97236719 97236949 -145427404 - L1MA6 LINE L1 -72 6228 5993 28 29 0 0 chr1 97236961 97236996 -145427357 + AT_rich Low_complexity Low_complexity 1 35 0 326 271 45 75 chr1 97237061 97237194 -145427159 - MIR SINE MIR -133 129 1 202 258 34 0 chr1 97239350 97239439 -145424914 + (TA)n Simple_repeat Simple_repeat 2 93 0 28 48 0 0 chr1 97239521 97239563 -145424790 + AT_rich Low_complexity Low_complexity 1 42 0 229 309 0 37 chr1 97239821 97239902 -145424451 - L2 LINE L2 0 3272 3195 469 295 38 43 chr1 97240293 97240503 -145423850 - MIR SINE MIR -48 214 6 907 163 50 50 chr1 97240889 97241110 -145423243 - L1MA10 LINE L1 0 6334 6114 361 283 232 0 chr1 97243238 97243376 -145420977 + MIR3 SINE MIR 30 199 -9 29 101 0 0 chr1 97244027 97244126 -145420227 + AT_rich Low_complexity Low_complexity 1 99 0 24 0 0 29 chr1 97244240 97244254 -145420099 + AT_rich Low_complexity Low_complexity 1 14 -20 1819 104 78 11 chr1 97244254 97244522 -145419831 + AluSc SINE Alu 2 287 -22 24 0 0 29 chr1 97244522 97244542 -145419811 + AT_rich Low_complexity Low_complexity 14 34 0 1397 98 19 51 chr1 97244549 97244763 -145419590 - AluSg/x SINE Alu -7 305 99 1380 220 3 10 chr1 97244764 97245068 -145419285 + L1MC4a LINE L1 5597 5898 -1910 363 44 0 0 chr1 97245070 97245115 -145419238 + (TG)n Simple_repeat Simple_repeat 2 46 0 304 287 11 0 chr1 97245208 97245295 -145419058 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 746 247 82 42 chr1 97245345 97245701 -145418652 + L1MC4a LINE L1 5909 6278 -1530 192 278 0 0 chr1 97245723 97245795 -145418558 + GA-rich Low_complexity Low_complexity 3 74 0 2179 135 23 46 chr1 97245931 97246483 -145417870 - MER51A LTR ERV1 0 634 1 1036 241 179 14 chr1 97246483 97246918 -145417435 + L1MC4 LINE L1 6404 6910 -1132 1011 95 12 12 chr1 97246918 97247086 -145417267 + (GAAA)n Simple_repeat Simple_repeat 3 170 0 225 0 0 0 chr1 97247085 97247110 -145417243 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 * 1154 291 20 33 chr1 97247116 97247607 -145416746 + L1MC4 LINE L1 7092 7576 -466 840 231 23 25 chr1 97248273 97248624 -145415729 - L1MEc LINE L1 -3322 2893 2435 198 71 0 0 chr1 97248663 97248691 -145415662 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 755 136 0 8 chr1 97248692 97248810 -145415543 - AluJb SINE Alu -195 117 1 506 223 102 35 chr1 97248823 97249079 -145415274 - L1MEc LINE L1 -4005 2391 2119 1174 164 0 0 chr1 97249558 97249777 -145414576 + L1MA5 LINE L1 6082 6300 0 389 136 0 0 chr1 97249829 97249888 -145414465 - AluJb SINE Alu -5 297 239 1065 141 0 0 chr1 97249888 97250037 -145414316 - AluJb SINE Alu -110 202 54 301 217 0 0 chr1 97250101 97250161 -145414192 - AluJb SINE Alu -242 60 1 1820 228 128 44 chr1 97251082 97251765 -145412588 + HsTC2a DNA Tc2 2 740 -4 1744 298 81 40 chr1 97252560 97253876 -145410477 + L1ME1 LINE L1 35 1262 -4955 186 43 0 0 chr1 97253876 97253899 -145410454 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1744 298 81 40 chr1 97253899 97254066 -145410287 + L1ME1 LINE L1 1262 1421 -4796 * 3054 229 95 10 chr1 97254062 97255226 -145409127 + L1ME1 LINE L1 2098 3326 -2889 * 3293 238 75 39 chr1 97255212 97256307 -145408046 + L1ME1 LINE L1 4073 5279 -956 1749 152 0 14 chr1 97256307 97256583 -145407770 + AluSx SINE Alu 34 305 -7 3293 238 75 39 chr1 97256583 97257506 -145406847 + L1ME1 LINE L1 5279 6167 -68 240 239 90 0 chr1 97258175 97258242 -145406111 + L1MC/D LINE L1 5694 5766 -2042 35 0 0 0 chr1 97258458 97258493 -145405860 + AT_rich Low_complexity Low_complexity 1 35 0 376 229 0 0 chr1 97258667 97258750 -145405603 - L1MA9 LINE L1 -38 6274 6192 * 509 210 67 0 chr1 97258735 97258854 -145405499 + L1MA9 LINE L1 6071 6197 -115 282 164 0 33 chr1 97258855 97258916 -145405437 - L1M LINE L1 -781 5387 5329 * 1432 226 13 3 chr1 97258911 97259229 -145405124 + L1 LINE L1 4959 5279 -867 1381 159 114 19 chr1 97259231 97259495 -145404858 + AluJb SINE Alu 3 291 -21 348 24 0 0 chr1 97259513 97259554 -145404799 + (CA)n Simple_repeat Simple_repeat 2 42 0 265 338 37 39 chr1 97259664 97259854 -145404499 + MIR SINE MIR 16 203 -59 268 286 0 0 chr1 97260755 97260832 -145403521 - MIR SINE MIR -5 257 181 603 285 68 19 chr1 97261634 97261841 -145402512 - MIR SINE MIR -3 259 43 195 316 191 20 chr1 97262051 97262203 -145402150 - MIR3 SINE MIR -15 193 16 323 332 78 43 chr1 97262481 97262827 -145401526 + L2 LINE L2 2946 3303 -10 363 371 16 0 chr1 97263594 97263718 -145400635 - MIR3 SINE MIR -2 206 81 2975 117 2 0 chr1 97264159 97264595 -145399758 - L1PA15 LINE L1 -6 6159 5723 4751 194 9 1 chr1 97264595 97265522 -145398831 + L1P LINE L1 3856 4789 -1357 408 253 40 10 chr1 97266318 97266417 -145397936 - MIR SINE MIR -99 163 62 235 261 0 0 chr1 97266462 97266508 -145397845 - L2 LINE L2 -12 3260 3215 455 349 26 54 chr1 97267691 97267909 -145396444 + L2 LINE L2 2397 2601 -713 868 211 22 40 chr1 97267909 97268132 -145396221 + MER20 DNA MER1_type 1 219 0 455 349 26 54 chr1 97268132 97268300 -145396053 + L2 LINE L2 2601 2772 -542 273 357 23 47 chr1 97268781 97269021 -145395332 - MIR SINE MIR -10 252 20 270 273 18 9 chr1 97269064 97269174 -145395179 + (TA)n Simple_repeat Simple_repeat 1 111 0 198 0 0 0 chr1 97269536 97269558 -145394795 + (A)n Simple_repeat Simple_repeat 1 22 0 2028 151 0 0 chr1 97270193 97270505 -145393848 + AluSx SINE Alu 1 312 0 4960 168 36 9 chr1 97270579 97272156 -145392197 + L1PB4 LINE L1 4532 6154 -2 520 316 31 89 chr1 97272890 97273248 -145391105 - L2 LINE L2 -3 3269 2933 1761 145 69 3 chr1 97273857 97274174 -145390179 - MER44D DNA MER2_type -1 608 1 793 198 29 33 chr1 97274255 97274498 -145389855 + L1MC4a LINE L1 6909 7150 -658 1698 236 111 7 chr1 97274501 97275043 -145389310 + L1MC4a LINE L1 7211 7808 0 192 356 154 0 chr1 97275375 97275479 -145388874 - L2 LINE L2 -15 3257 3138 1435 189 105 27 chr1 97275582 97275916 -145388437 - MLT1B LTR MaLR 0 390 31 2081 134 0 7 chr1 97275916 97276215 -145388138 - AluSq SINE Alu -16 297 1 441 0 0 0 chr1 97278812 97278861 -145385492 + (CA)n Simple_repeat Simple_repeat 2 50 0 233 122 24 0 chr1 97280133 97280174 -145384179 - L2 LINE L2 0 3313 3272 392 290 81 21 chr1 97281356 97281542 -145382811 + L2 LINE L2 3117 3313 0 319 191 45 11 chr1 97281999 97282067 -145382286 - L1MCa LINE L1 -4361 2065 1992 180 0 0 0 chr1 97282067 97282087 -145382266 + (GA)n Simple_repeat Simple_repeat 2 21 0 319 191 45 11 chr1 97282087 97282107 -145382246 - L1MCa LINE L1 -4434 1992 1974 1896 165 3 0 chr1 97282392 97282689 -145381664 + AluJb SINE Alu 1 298 -14 29 28 0 0 chr1 97284292 97284328 -145380025 + AT_rich Low_complexity Low_complexity 1 36 0 217 373 0 13 chr1 97284542 97284617 -145379736 - MER5C DNA MER1_type -250 74 1 1105 147 41 83 chr1 97285700 97285736 -145378617 - MER58B DNA MER1_type -2081 339 303 1946 143 37 0 chr1 97285736 97285856 -145378497 + AluJo SINE Alu 1 115 -197 297 0 0 0 chr1 97285856 97285889 -145378464 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 1946 143 37 0 chr1 97285889 97286062 -145378291 + AluJo SINE Alu 115 305 -7 1105 147 41 83 chr1 97286062 97286291 -145378062 - MER58B DNA MER1_type -2117 303 85 4479 155 60 23 chr1 97286306 97287153 -145377200 + L1MB2 LINE L1 5134 6023 -148 2148 159 83 8 chr1 97287153 97287549 -145376804 + MSTB LTR MaLR 1 426 0 4479 155 60 23 chr1 97287549 97287700 -145376653 + L1MB2 LINE L1 6023 6167 -4 365 250 132 0 chr1 97287710 97287786 -145376567 - MER58B DNA MER1_type -253 88 3 353 345 154 28 chr1 97288005 97288890 -145375463 - L2 LINE L2 -229 3043 2047 478 270 102 36 chr1 97288902 97289098 -145375255 - MIR SINE MIR -7 255 47 292 365 27 62 chr1 97289102 97289472 -145374881 - L2 LINE L2 -1261 2053 1697 427 308 34 14 chr1 97290366 97290512 -145373841 + L2 LINE L2 2954 3102 -170 403 204 46 37 chr1 97290916 97291024 -145373329 - MER103 DNA DNA -50 116 8 14805 188 41 11 chr1 97291728 97298072 -145366281 - L1PB1 LINE L1 0 6867 179 207 100 0 0 chr1 97298312 97298342 -145366011 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 294 29 0 0 chr1 97299725 97299760 -145364593 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 97301874 97301895 -145362458 + AT_rich Low_complexity Low_complexity 1 21 0 282 395 18 0 chr1 97302303 97302417 -145361936 - L2 LINE L2 -39 3233 3118 334 307 59 0 chr1 97302521 97302622 -145361731 + L2 LINE L2 3207 3313 0 279 271 49 33 chr1 97302680 97302802 -145361551 - L2 LINE L2 -342 2930 2807 272 301 84 34 chr1 97302914 97303210 -145361143 + L2 LINE L2 2886 3196 -76 185 111 28 56 chr1 97303405 97303441 -145360912 + MIR SINE MIR 86 120 -142 23 0 0 0 chr1 97303774 97303797 -145360556 + AT_rich Low_complexity Low_complexity 1 23 0 460 289 32 34 chr1 97305414 97305637 -145358716 + MIR3 SINE MIR 2 223 -39 204 40 0 0 chr1 97306082 97306107 -145358246 + (CA)n Simple_repeat Simple_repeat 2 26 0 389 265 52 107 chr1 97306209 97306537 -145357816 + L2 LINE L2 2897 3206 -107 596 172 52 17 chr1 97307465 97307581 -145356772 - MLT1L LTR MaLR -84 531 412 436 314 24 12 chr1 97307632 97307801 -145356552 - MLT1L LTR MaLR -352 263 93 221 327 39 49 chr1 97308427 97308632 -145355721 - L2 LINE L2 -19 3294 3092 243 88 0 0 chr1 97309288 97309322 -145355031 + (TA)n Simple_repeat Simple_repeat 1 34 0 189 0 0 0 chr1 97310549 97310570 -145353783 + (ATTTG)n Simple_repeat Simple_repeat 5 25 0 1829 58 37 4 chr1 97310570 97310813 -145353540 - L1PA10 LINE L1 -21 6147 5897 691 213 0 0 chr1 97310822 97310944 -145353409 - FLAM_A SINE Alu -11 122 1 186 43 0 0 chr1 97312637 97312660 -145351693 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2421 133 11 0 chr1 97312853 97313213 -145351140 + THE1B LTR MaLR 1 364 0 2288 89 0 0 chr1 97313932 97314246 -145350107 + AluY SINE Alu 1 314 0 228 191 36 0 chr1 97314383 97314467 -145349886 + (TA)n Simple_repeat Simple_repeat 1 87 0 298 299 0 0 chr1 97315923 97315990 -145348363 - L2 LINE L2 -3 3310 3244 2920 103 21 2 chr1 97316143 97316562 -145347791 + MSTA LTR MaLR 2 428 0 638 289 60 78 chr1 97316863 97317378 -145346975 - REP3 LTR ERV -55 507 2 369 244 12 0 chr1 97317682 97317764 -145346589 - L2 LINE L2 -36 3277 3195 276 316 71 0 chr1 97318481 97318553 -145345800 + L2 LINE L2 3151 3229 -43 467 311 176 14 chr1 97318553 97318775 -145345578 + MIR SINE MIR 4 261 -1 389 20 0 20 chr1 97319085 97319136 -145345217 + (CA)n Simple_repeat Simple_repeat 2 51 0 2281 190 33 66 chr1 97319806 97320339 -145344014 + MLT2B3 LTR ERVL 1 515 -39 522 0 0 0 chr1 97320339 97320397 -145343956 + (TA)n Simple_repeat Simple_repeat 1 58 0 2281 190 33 66 chr1 97320397 97320436 -145343917 + MLT2B3 LTR ERVL 515 554 0 444 312 80 42 chr1 97320694 97320957 -145343396 + MLT1K LTR MaLR 316 588 0 1984 274 42 32 chr1 97321224 97322062 -145342291 + L1ME LINE L1 911 1756 -4628 * 6601 211 55 47 chr1 97322053 97324726 -145339627 + L1ME LINE L1 3318 6119 -281 7139 157 46 9 chr1 97324737 97325323 -145339030 + L1MA4A LINE L1 3868 4431 -1872 417 90 0 0 chr1 97325323 97325390 -145338963 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 7139 157 46 9 chr1 97325390 97326612 -145337741 + L1MA4A LINE L1 4431 5752 -551 6115 96 22 9 chr1 97326615 97328362 -145335991 + L1PA14 LINE L1 4398 6157 -4 2869 137 5 45 chr1 97328363 97328918 -145335435 + L1MA4A LINE L1 5771 6303 0 535 315 34 17 chr1 97329279 97329457 -145334896 - MIR SINE MIR -81 181 1 288 253 112 59 chr1 97330673 97330843 -145333510 - MIR SINE MIR -64 198 20 198 319 160 0 chr1 97332402 97332496 -145331857 - L2 LINE L2 -6 3266 3158 823 268 121 18 chr1 97334312 97334651 -145329702 - L2 LINE L2 0 3313 2940 275 291 71 41 chr1 97335199 97335395 -145328958 - L2 LINE L2 0 3313 3112 355 206 132 37 chr1 97335747 97335883 -145328470 + L2 LINE L2 3165 3313 0 249 108 0 0 chr1 97337413 97337450 -145326903 + (A)n Simple_repeat Simple_repeat 1 37 0 27 0 0 0 chr1 97338072 97338099 -145326254 + AT_rich Low_complexity Low_complexity 1 27 0 227 176 39 0 chr1 97339869 97339920 -145324433 + (TA)n Simple_repeat Simple_repeat 1 53 0 282 153 0 0 chr1 97340700 97340759 -145323594 + (TG)n Simple_repeat Simple_repeat 1 59 0 22 0 0 0 chr1 97341988 97342010 -145322343 + AT_rich Low_complexity Low_complexity 1 22 0 4124 183 35 4 chr1 97342192 97343023 -145321330 - L1MB2 LINE L1 0 6171 5315 503 188 9 0 chr1 97343026 97343138 -145321215 - L1MA4 LINE L1 -7 6293 6181 1988 128 15 9 chr1 97343577 97343912 -145320441 + L1MA2 LINE L1 5968 6304 0 2044 108 24 3 chr1 97343934 97344221 -145320132 + AluSx SINE Alu 1 293 -19 303 197 40 0 chr1 97347100 97347176 -145317177 + MER103 DNA DNA 25 103 -63 198 279 0 44 chr1 97347177 97347245 -145317108 - L2 LINE L2 -46 3267 3203 228 314 157 28 chr1 97347909 97348164 -145316189 + L2 LINE L2 3017 3304 -9 700 277 94 53 chr1 97348573 97349010 -145315343 + MLT1J LTR MaLR 1 455 -56 216 307 175 18 chr1 97350506 97350620 -145313733 + MIR3 SINE MIR 10 141 -67 243 0 0 0 chr1 97350620 97350647 -145313706 + (CTGGGG)n Simple_repeat Simple_repeat 3 29 0 530 282 109 27 chr1 97352973 97353193 -145311160 - MIR SINE MIR -10 252 15 25 31 0 0 chr1 97355090 97355122 -145309231 + AT_rich Low_complexity Low_complexity 1 32 0 12522 48 2 0 chr1 97356099 97357782 -145306571 + L1PA5 LINE L1 2259 3945 -2201 8026 31 0 0 chr1 97357776 97358771 -145305582 - L1PA5 LINE L1 -1258 4888 3894 * 7298 34 10 13 chr1 97358771 97360045 -145304308 + L1PA5 LINE L1 4884 6154 0 180 255 39 0 chr1 97360558 97360609 -145303744 + L2 LINE L2 3182 3234 -38 234 290 0 14 chr1 97360657 97360726 -145303627 + GA-rich Low_complexity Low_complexity 1 68 0 255 250 52 86 chr1 97361311 97361427 -145302926 + MIR SINE MIR 101 212 -50 308 286 41 28 chr1 97362707 97362823 -145301530 - MIR SINE MIR -85 123 4 360 333 60 19 chr1 97363229 97363445 -145300908 - L2 LINE L2 -493 2821 2597 419 356 55 32 chr1 97365212 97365465 -145298888 + MIR SINE MIR 2 260 -2 44 46 0 0 chr1 97366293 97366358 -145297995 + AT_rich Low_complexity Low_complexity 1 65 0 764 286 75 9 chr1 97367195 97367422 -145296931 + MIR SINE MIR 20 261 -1 240 265 0 0 chr1 97368187 97368236 -145296117 + polypurine Low_complexity Low_complexity 4 52 0 499 281 7 7 chr1 97368513 97368659 -145295694 + MER117 DNA MER1_type 2 147 -50 2253 110 7 0 chr1 97369031 97369341 -145295012 + AluSx SINE Alu 1 312 0 219 69 0 0 chr1 97370574 97370603 -145293750 + (T)n Simple_repeat Simple_repeat 1 29 0 186 71 0 0 chr1 97371657 97371685 -145292668 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2550 57 0 0 chr1 97372824 97373125 -145291228 - AluY SINE Alu -10 301 1 181 255 0 59 chr1 97373530 97373581 -145290772 - L2 LINE L2 -585 2729 2682 433 365 157 9 chr1 97373967 97374419 -145289934 - L2 LINE L2 -681 2633 2115 292 253 27 0 chr1 97374428 97374503 -145289850 + FLAM SINE Alu 50 115 -18 208 204 37 0 chr1 97374628 97374682 -145289671 + (TG)n Simple_repeat Simple_repeat 1 56 0 229 243 29 14 chr1 97374759 97374829 -145289524 + GA-rich Low_complexity Low_complexity 5 75 0 180 0 0 0 chr1 97374876 97374896 -145289457 + (TG)n Simple_repeat Simple_repeat 2 21 0 755 261 62 93 chr1 97377394 97377799 -145286554 - MLT1H LTR MaLR -4 545 160 488 243 79 96 chr1 97377799 97378153 -145286200 - LTR52 LTR ERVL 0 421 74 2157 126 3 7 chr1 97378153 97378462 -145285891 + AluSq SINE Alu 1 308 -5 488 243 79 96 chr1 97378462 97378535 -145285818 - LTR52 LTR ERVL -347 74 1 755 261 62 93 chr1 97378535 97378680 -145285673 - MLT1H LTR MaLR -389 160 12 231 298 19 19 chr1 97379671 97379775 -145284578 + L2 LINE L2 2464 2567 -747 242 374 48 14 chr1 97380190 97380337 -145284016 + L2 LINE L2 3162 3313 0 290 336 118 0 chr1 97381919 97382038 -145282315 + L2 LINE L2 3140 3272 0 201 308 88 39 chr1 97383359 97383541 -145280812 + L2 LINE L2 2299 2489 -825 597 308 28 6 chr1 97384753 97384935 -145279418 - MIR SINE MIR -4 258 73 1911 143 4 0 chr1 97385139 97385419 -145278934 - AluSx SINE Alu -31 281 1 314 324 90 21 chr1 97385490 97385635 -145278718 - MIR3 SINE MIR -19 189 35 208 212 165 47 chr1 97385711 97385796 -145278557 + MIR SINE MIR 3 97 -165 2600 90 3 6 chr1 97385801 97386157 -145278196 + THE1A LTR MaLR 1 355 0 252 342 77 50 chr1 97387894 97388154 -145276199 + L2 LINE L2 3005 3271 -1 601 345 70 22 chr1 97388313 97388870 -145275483 - L2 LINE L2 -66 3247 2667 985 235 23 9 chr1 97388953 97389174 -145275179 - MER58A DNA MER1_type 0 224 1 345 292 131 21 chr1 97389174 97389503 -145274850 - L1M4 LINE L1 -2122 4024 3660 2667 95 11 0 chr1 97389516 97389875 -145274478 - THE1B LTR MaLR -1 363 1 275 290 57 76 chr1 97389946 97390208 -145274145 + HAL1 LINE L1 118 374 -2133 346 227 57 0 chr1 97390245 97390333 -145274020 + L1MDa LINE L1 1817 1909 -4631 1010 184 52 88 chr1 97390344 97390509 -145273844 + L1MB3 LINE L1 5810 5979 -204 2211 114 0 9 chr1 97390509 97390824 -145273529 + AluSx SINE Alu 1 312 0 1010 184 52 88 chr1 97390824 97391044 -145273309 + L1MB3 LINE L1 5979 6181 -2 4117 201 77 45 chr1 97391086 97392169 -145272184 + L1MDb LINE L1 55 1199 -5207 1674 86 116 135 chr1 97392169 97392531 -145271822 - THE1A LTR MaLR 0 355 1 4117 201 77 45 chr1 97392531 97393225 -145271128 + L1MDb LINE L1 1199 1869 -4537 711 179 0 8 chr1 97393955 97394078 -145270275 - MSTA LTR MaLR 0 428 307 956 114 0 0 chr1 97394229 97394361 -145269992 - AluY SINE Alu -179 132 1 189 0 0 0 chr1 97394361 97394382 -145269971 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1586 146 89 0 chr1 97394385 97394666 -145269687 - L1MC3 LINE L1 -370 7415 7110 6986 88 29 1 chr1 97394666 97395599 -145268754 + HSMAR1 DNA Mariner 8 966 -321 1943 88 13 52 chr1 97395599 97395905 -145268448 + AluSc SINE Alu 1 294 -15 1088 243 88 54 chr1 97396213 97396715 -145267638 + LTR53 LTR ERVL 1 519 0 21156 96 17 2 chr1 97397106 97400970 -145263383 + L1PA7 LINE L1 2262 6152 -2 23 0 0 0 chr1 97401027 97401050 -145263303 + AT_rich Low_complexity Low_complexity 1 23 0 731 270 26 8 chr1 97401191 97401457 -145262896 - L1ME LINE L1 -301 5820 5550 28 0 0 0 chr1 97401792 97401820 -145262533 + AT_rich Low_complexity Low_complexity 1 28 0 1283 85 6 0 chr1 97401918 97402095 -145262258 + L1MA1 LINE L1 6125 6302 0 230 272 52 52 chr1 97402399 97402535 -145261818 + L1P LINE L1 4955 5090 -1056 477 309 108 46 chr1 97402733 97403231 -145261122 + L1MC1 LINE L1 5313 5841 -1967 212 169 34 17 chr1 97403487 97403546 -145260807 + (TA)n Simple_repeat Simple_repeat 2 61 0 180 244 24 0 chr1 97404387 97404428 -145259925 + MIR SINE MIR 156 197 -65 516 279 89 30 chr1 97404844 97405081 -145259272 + L1M2 LINE L1 5322 5572 -740 372 301 72 4 chr1 97405094 97405330 -145259023 + L1ME3A LINE L1 5632 5883 -287 402 97 32 0 chr1 97405458 97405520 -145258833 - THE1C LTR MaLR 0 375 312 528 201 118 42 chr1 97405727 97405871 -145258482 + L1MC1 LINE L1 6180 6327 -6 2072 114 77 11 chr1 97406170 97406522 -145257831 - THE1C LTR MaLR 0 375 1 351 256 11 0 chr1 97406899 97406989 -145257364 - MER103 DNA DNA -74 92 2 191 260 20 0 chr1 97407512 97407562 -145256791 + L2 LINE L2 3263 3313 0 26 0 0 0 chr1 97407767 97407793 -145256560 + AT_rich Low_complexity Low_complexity 1 26 0 1716 161 39 0 chr1 97408396 97408675 -145255678 + AluJo SINE Alu 1 290 -22 818 152 0 29 chr1 97410181 97410319 -145254034 + FLAM_C SINE Alu 1 134 -9 915 174 0 36 chr1 97410319 97410486 -145253867 + MER58B DNA MER1_type 181 341 0 360 321 69 8 chr1 97410902 97411033 -145253320 + MIR3 SINE MIR 21 159 -49 488 278 63 24 chr1 97411038 97411243 -145253110 - MIR SINE MIR -2 260 48 307 289 93 0 chr1 97411434 97411531 -145252822 + MLT1J1 LTR MaLR 71 176 -270 181 308 94 44 chr1 97411533 97411692 -145252661 - MIR SINE MIR 0 262 96 186 263 105 0 chr1 97411721 97411778 -145252575 + L2 LINE L2 3174 3236 -36 236 326 57 106 chr1 97413084 97413188 -145251165 - L2 LINE L2 -8 3264 3157 1130 130 22 87 chr1 97413188 97413419 -145250934 - MER20 DNA MER1_type 0 219 4 236 326 57 106 chr1 97413419 97413541 -145250812 - L2 LINE L2 -115 3157 3049 1022 211 10 10 chr1 97413630 97413834 -145250519 - MIR SINE MIR -23 239 36 764 270 141 34 chr1 97414370 97414725 -145249628 + L2 LINE L2 2920 3312 -1 419 241 152 18 chr1 97414869 97414981 -145249372 - MIR SINE MIR -118 144 18 341 261 20 72 chr1 97415060 97415213 -145249140 - MIR SINE MIR -60 202 58 2349 73 0 52 chr1 97415325 97415655 -145248698 - AluSp SINE Alu 0 313 1 237 296 14 42 chr1 97416140 97416282 -145248071 + L1P LINE L1 4882 5019 -1127 453 280 128 18 chr1 97416666 97416948 -145247405 + L1ME4a LINE L1 5510 5822 -299 305 224 191 7 chr1 97417288 97417440 -145246913 + L1ME4a LINE L1 5941 6120 -1 352 282 134 17 chr1 97417463 97417754 -145246599 + L1ME4a LINE L1 5795 6119 -2 238 281 49 0 chr1 97418039 97418121 -145246232 - MIR SINE MIR -93 115 30 221 0 35 0 chr1 97418600 97418629 -145245724 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 1422 120 30 4 chr1 97419391 97419625 -145244728 - MSTA LTR MaLR -188 240 1 245 294 0 0 chr1 97420162 97420230 -145244123 + L1PA15-16 LINE L1 1476 1543 -5306 5307 232 44 61 chr1 97420252 97422318 -145242035 + L1PA15-16 LINE L1 1355 3456 -3393 183 42 0 0 chr1 97422318 97422342 -145242011 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5307 232 44 61 chr1 97422342 97422506 -145241847 + L1PA15-16 LINE L1 3456 3621 -3228 1774 62 0 0 chr1 97422506 97422717 -145241636 + AluY SINE Alu 24 234 -77 5307 232 44 61 chr1 97422717 97423643 -145240710 + L1PA15-16 LINE L1 3621 4458 -2391 2138 252 116 39 chr1 97423672 97424783 -145239570 + L1MEc LINE L1 207 1275 -4942 2189 107 7 7 chr1 97424785 97425093 -145239260 + AluY SINE Alu 1 308 -3 1534 147 124 3 chr1 97425093 97425407 -145238946 + L1MC3 LINE L1 7430 7781 -4 2371 84 10 0 chr1 97425542 97425850 -145238503 + AluSp SINE Alu 3 313 0 303 71 14 57 chr1 97426115 97426185 -145238168 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr1 97430527 97430549 -145233804 + AT_rich Low_complexity Low_complexity 1 22 0 639 298 51 69 chr1 97430882 97431315 -145233038 + MARNA DNA Mariner 73 497 -89 1397 296 70 35 chr1 97431955 97432093 -145232260 + HERV16 LTR ERVL 1005 1137 -3859 2246 58 0 0 chr1 97432093 97432368 -145231985 + AluY SINE Alu 1 275 -36 236 53 26 0 chr1 97432368 97432406 -145231947 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1397 296 70 35 chr1 97432406 97433247 -145231106 + HERV16 LTR ERVL 1136 2084 -2912 324 283 73 24 chr1 97433256 97433461 -145230892 + LTR16A LTR ERVL 239 453 -4 1312 195 43 0 chr1 97433640 97433917 -145230436 + L1MD1 LINE L1 5901 6189 -53 207 0 0 0 chr1 97433917 97433940 -145230413 + (T)n Simple_repeat Simple_repeat 1 23 0 2154 121 0 26 chr1 97434126 97434432 -145229921 - AluSx SINE Alu -12 300 3 459 84 0 0 chr1 97434433 97434504 -145229849 + L1MD2 LINE L1 6287 6357 -2 218 158 70 18 chr1 97435000 97435057 -145229296 + (CAGA)n Simple_repeat Simple_repeat 3 62 0 4877 181 38 58 chr1 97435091 97435611 -145228742 + L1MB1 LINE L1 4052 4581 -1608 270 0 0 0 chr1 97435611 97435641 -145228712 + (TG)n Simple_repeat Simple_repeat 2 31 0 4877 181 38 58 chr1 97435641 97437286 -145227067 + L1MB1 LINE L1 4581 6166 -23 1793 157 24 7 chr1 97437687 97437974 -145226379 + AluSx SINE Alu 1 292 -20 330 271 59 29 chr1 97438011 97438181 -145226172 + L1MC4a LINE L1 5769 5943 -1865 2070 132 0 0 chr1 97438185 97438472 -145225881 + AluSx SINE Alu 3 289 -23 21 36 0 0 chr1 97438650 97438678 -145225675 + AT_rich Low_complexity Low_complexity 1 28 0 239 242 125 16 chr1 97438764 97438892 -145225461 + MIR SINE MIR 66 207 -55 850 301 45 35 chr1 97439168 97439567 -145224786 - LTR16C LTR ERVL 0 491 89 6907 56 1 22 chr1 97439979 97441248 -145223105 - L1PA7 LINE L1 -4 6150 4905 2451 79 7 0 chr1 97441248 97441553 -145222800 + AluY SINE Alu 2 308 -3 6907 56 1 22 chr1 97441553 97441708 -145222645 - L1PA7 LINE L1 -1249 4905 4748 3365 71 0 0 chr1 97441708 97442158 -145222195 + L1PA7 LINE L1 4295 4744 -1402 1911 169 148 14 chr1 97443244 97443683 -145220670 + MLT1D LTR MaLR 6 503 -2 22 35 0 0 chr1 97443831 97443860 -145220493 + AT_rich Low_complexity Low_complexity 1 29 0 1738 160 0 29 chr1 97444016 97444297 -145220056 + AluJo SINE Alu 1 273 -39 320 203 0 27 chr1 97444314 97444388 -145219965 + AluJ/FRAM SINE Alu 224 295 -7 393 188 0 0 chr1 97444388 97444468 -145219885 + GA-rich Low_complexity Low_complexity 1 80 0 547 280 104 7 chr1 97444598 97444886 -145219467 + HAL1b LINE L1 399 660 -688 1784 116 8 8 chr1 97445298 97445557 -145218796 - AluSc SINE Alu -14 295 37 381 286 133 15 chr1 97445695 97445891 -145218462 + HAL1 LINE L1 1 219 -2288 43 35 0 0 chr1 97446084 97446141 -145218212 + AT_rich Low_complexity Low_complexity 1 57 0 1606 181 13 30 chr1 97446168 97446471 -145217882 + AluJb SINE Alu 9 306 -6 275 125 0 0 chr1 97446661 97446709 -145217644 - Alu SINE Alu 0 302 255 1721 160 3 34 chr1 97446709 97447002 -145217351 - AluJo SINE Alu -28 284 1 28 0 0 0 chr1 97447050 97447078 -145217275 + AT_rich Low_complexity Low_complexity 1 28 0 314 190 0 0 chr1 97447087 97447145 -145217208 + Tigger3(Golem) DNA MER2_type 2970 3027 -2 1268 287 134 19 chr1 97447154 97447820 -145216533 + HAL1 LINE L1 1035 1776 -731 395 246 121 37 chr1 97447827 97448099 -145216254 + HAL1 LINE L1 1845 2139 -368 439 268 111 39 chr1 97448100 97448253 -145216100 + MIR SINE MIR 95 258 -4 225 172 35 17 chr1 97448274 97448332 -145216021 + HAL1 LINE L1 2146 2204 -303 456 243 74 26 chr1 97448359 97448548 -145215805 + HAL1 LINE L1 2310 2507 0 2492 124 8 5 chr1 97448779 97449151 -145215202 - THE1C LTR MaLR -2 373 1 230 358 55 9 chr1 97449884 97449993 -145214360 + L2 LINE L2 3182 3295 -18 195 100 0 0 chr1 97450164 97450194 -145214159 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 433 153 14 0 chr1 97450277 97450349 -145214004 + L1MC3 LINE L1 6702 6774 -1011 288 53 0 0 chr1 97550775 97550813 -145113540 + (TG)n Simple_repeat Simple_repeat 2 39 0 26 30 0 0 chr1 97551992 97552025 -145112328 + AT_rich Low_complexity Low_complexity 1 33 0 528 303 13 0 chr1 97552190 97552345 -145112008 + MIR SINE MIR 100 256 -6 291 93 0 0 chr1 97552347 97552390 -145111963 + (ATG)n Simple_repeat Simple_repeat 1 43 0 283 360 30 10 chr1 97552428 97552528 -145111825 + L2 LINE L2 3169 3270 -2 551 231 21 4 chr1 97552865 97553108 -145111245 + CT-rich Low_complexity Low_complexity 1 247 0 252 243 95 41 chr1 97553970 97554139 -145110214 + L2 LINE L2 3049 3226 -87 308 252 8 46 chr1 97554212 97554343 -145110010 + L1ME3A LINE L1 6045 6170 0 222 336 126 14 chr1 97555976 97556119 -145108234 + MIR SINE MIR 34 192 -70 342 45 0 0 chr1 97558264 97558308 -145106045 + (CA)n Simple_repeat Simple_repeat 2 45 0 183 162 0 0 chr1 97558309 97558346 -145106007 + (CCA)n Simple_repeat Simple_repeat 3 39 0 1797 131 10 69 chr1 97558878 97559184 -145105169 + AluSx SINE Alu 3 290 -22 198 0 0 0 chr1 97559188 97559210 -145105143 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2824 10 0 0 chr1 97561668 97561973 -145102380 - AluYa5 SINE Alu -6 305 1 1165 292 79 41 chr1 97563051 97563619 -145100734 - Charlie7 DNA MER1_type -1927 685 87 2575 27 0 61 chr1 97563619 97563947 -145100406 + AluY SINE Alu 1 308 -3 1165 292 79 41 chr1 97563947 97564038 -145100315 - Charlie7 DNA MER1_type -2525 87 1 240 35 0 0 chr1 97564163 97564192 -145100161 + (TA)n Simple_repeat Simple_repeat 1 29 0 256 322 109 42 chr1 97564344 97564627 -145099726 + L2 LINE L2 2560 2861 -453 286 250 50 83 chr1 97565022 97565142 -145099211 - L2 LINE L2 -11 3302 3187 22 0 0 0 chr1 97565345 97565367 -145098986 + AT_rich Low_complexity Low_complexity 1 22 0 706 297 26 0 chr1 97565726 97565918 -145098435 - MIR SINE MIR -28 234 38 491 275 115 40 chr1 97566684 97566884 -145097469 + MIR SINE MIR 32 246 -16 22 35 0 0 chr1 97567529 97567558 -145096795 + AT_rich Low_complexity Low_complexity 1 29 0 396 301 18 0 chr1 97567704 97567817 -145096536 - MIR SINE MIR -86 176 62 2844 3 0 0 chr1 97567915 97568220 -145096133 - AluYb8 SINE Alu -13 305 1 244 167 56 19 chr1 97568863 97568917 -145095436 + MARNA DNA Mariner 9 64 -522 317 286 126 8 chr1 97570812 97570944 -145093409 + MIR3 SINE MIR 9 152 -67 404 345 42 5 chr1 97571120 97571311 -145093042 - MIR SINE MIR 0 262 65 677 268 32 78 chr1 97573570 97573854 -145090499 - MER115 DNA AcHobo -421 272 2 189 195 0 0 chr1 97574216 97574257 -145090096 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 181 302 12 58 chr1 97576638 97576724 -145087629 - MIR SINE MIR -21 241 160 23 33 0 0 chr1 97577148 97577178 -145087175 + AT_rich Low_complexity Low_complexity 1 30 0 468 277 23 0 chr1 97579135 97579265 -145085088 - L2 LINE L2 -2 3311 3179 1613 247 39 25 chr1 97579702 97580196 -145084157 - MLT1D LTR MaLR -6 490 1 384 328 53 32 chr1 97580197 97580535 -145083818 - L1MC/D LINE L1 -2059 5749 5405 374 257 66 59 chr1 97581063 97581215 -145083138 + HAL1 LINE L1 813 965 -1542 359 331 143 25 chr1 97581292 97581606 -145082747 + L1ME4a LINE L1 5771 6121 0 2218 108 26 0 chr1 97582882 97583187 -145081166 + AluSq SINE Alu 1 313 0 828 228 56 6 chr1 97583189 97583369 -145080984 + MIR SINE MIR 25 213 -49 6457 225 51 30 chr1 97583544 97583668 -145080685 - L1MB7 LINE L1 -326 6356 6236 726 197 0 0 chr1 97583668 97583790 -145080563 - FLAM_A SINE Alu -11 122 1 6457 225 51 30 chr1 97583790 97586277 -145078076 - L1MB7 LINE L1 -446 6236 3685 4926 214 51 38 chr1 97586263 97586659 -145077694 - L1MB7 LINE L1 -5082 1460 1071 * 284 0 28 0 chr1 97586659 97586695 -145077658 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4926 214 51 38 chr1 97586695 97587733 -145076620 - L1MB7 LINE L1 -5471 1071 3 758 297 35 9 chr1 97592673 97592905 -145071448 + MIR SINE MIR 3 240 -22 368 321 103 22 chr1 97593172 97593356 -145070997 + MIR SINE MIR 32 230 -32 591 268 128 0 chr1 97593925 97594089 -145070264 - MIR3 SINE MIR -10 198 14 183 80 0 0 chr1 97594319 97594344 -145070009 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr1 97594419 97594442 -145069911 + AT_rich Low_complexity Low_complexity 1 23 0 318 321 27 9 chr1 97594783 97594895 -145069458 + L1MC4 LINE L1 6590 6703 -1339 662 262 99 6 chr1 97594906 97595078 -145069275 - MIR SINE MIR -74 188 1 44 0 0 0 chr1 97595345 97595389 -145068964 + AT_rich Low_complexity Low_complexity 1 44 0 541 89 13 0 chr1 97595678 97595757 -145068596 + MADE1 DNA Mariner 1 80 0 535 89 0 13 chr1 97595913 97595992 -145068361 - MADE1 DNA Mariner -2 78 1 2039 127 0 3 chr1 97597184 97597476 -145066877 - AluSc SINE Alu -18 291 1 292 351 27 0 chr1 97597590 97597701 -145066652 + MIR3 SINE MIR 77 190 -18 694 185 8 15 chr1 97597725 97597855 -145066498 - FLAM_A SINE Alu -3 130 2 1374 279 111 62 chr1 97598043 97598703 -145065650 - MER115 DNA AcHobo -1 692 1 724 190 38 13 chr1 97598816 97598974 -145065379 + MLT2C1 LTR ERVL 228 389 -8 295 296 75 43 chr1 97599153 97599339 -145065014 + MIR SINE MIR 10 201 -61 449 264 130 38 chr1 97599471 97599710 -145064643 + MIR SINE MIR 2 262 0 227 309 0 0 chr1 97599735 97599790 -145064563 - L2 LINE L2 -4 3309 3255 272 336 40 40 chr1 97601355 97601480 -145062873 + MIR SINE MIR 17 141 -67 504 184 0 0 chr1 97601623 97601710 -145062643 - MER94 DNA DNA -4 130 44 28 48 0 0 chr1 97602052 97602094 -145062259 + AT_rich Low_complexity Low_complexity 1 42 0 1923 175 3 7 chr1 97603343 97603652 -145060701 + AluSx SINE Alu 2 309 -3 551 259 104 41 chr1 97604202 97604422 -145059931 + L1MEd LINE L1 895 1128 -4991 28 0 0 0 chr1 97604422 97604450 -145059903 + AT_rich Low_complexity Low_complexity 1 28 0 45 75 0 0 chr1 97604892 97604986 -145059367 + AT_rich Low_complexity Low_complexity 1 94 0 746 149 8 8 chr1 97605100 97605221 -145059132 + FLAM_C SINE Alu 7 127 -16 250 322 60 54 chr1 97606057 97606206 -145058147 - MIR SINE MIR -5 257 108 934 119 0 0 chr1 97606374 97606500 -145057853 - AluSg SINE Alu -16 294 169 1202 110 12 0 chr1 97606663 97606827 -145057526 - AluSg SINE Alu -144 166 1 25 0 0 0 chr1 97606945 97606970 -145057383 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr1 97606978 97606998 -145057355 + (TA)n Simple_repeat Simple_repeat 1 20 0 195 204 0 0 chr1 97608172 97608221 -145056132 + (CATA)n Simple_repeat Simple_repeat 2 50 0 286 320 0 29 chr1 97608368 97608471 -145055882 - L2 LINE L2 0 3272 3173 2354 51 0 42 chr1 97608606 97608917 -145055436 + AluY SINE Alu 1 298 -13 228 357 71 0 chr1 97613120 97613204 -145051149 - L2 LINE L2 -18 3254 3165 191 364 28 56 chr1 97613446 97613589 -145050764 - L2 LINE L2 -25 3247 3109 638 284 102 25 chr1 97615623 97615859 -145048494 - MIR SINE MIR -1 261 8 414 333 97 46 chr1 97615856 97616431 -145047922 - L2 LINE L2 -58 3255 2641 * 381 289 35 35 chr1 97616478 97616620 -145047733 - MIR SINE MIR -108 154 13 195 214 114 29 chr1 97616908 97616978 -145047375 + MIR SINE MIR 154 229 -33 620 275 49 20 chr1 97617536 97617783 -145046570 - MER112 DNA MER1_type -2 254 1 487 256 101 0 chr1 97618138 97618267 -145046086 - MIR SINE MIR -10 252 111 333 0 0 0 chr1 97618397 97618434 -145045919 + (TG)n Simple_repeat Simple_repeat 2 38 0 195 139 0 0 chr1 97618435 97618471 -145045882 + (GA)n Simple_repeat Simple_repeat 2 37 0 2133 138 7 0 chr1 97618811 97619116 -145045237 - AluSx SINE Alu -5 307 1 368 338 45 5 chr1 97619766 97619964 -145044389 + L2 LINE L2 3098 3303 -10 339 330 51 10 chr1 97620620 97620817 -145043536 - L2 LINE L2 -11 3302 3098 605 322 130 48 chr1 97621586 97622350 -145042003 - L2 LINE L2 -1 3271 2446 353 333 29 7 chr1 97622758 97622896 -145041457 + MIR3 SINE MIR 3 143 -65 210 71 0 0 chr1 97623057 97623085 -145041268 + (CA)n Simple_repeat Simple_repeat 1 28 0 284 329 95 0 chr1 97623176 97623313 -145041040 - MLT1J LTR MaLR -125 386 237 2172 112 0 0 chr1 97623807 97624101 -145040252 + AluSg SINE Alu 1 294 -16 2423 84 0 25 chr1 97625693 97626014 -145038339 - AluSq SINE Alu 0 313 1 253 137 233 41 chr1 97627192 97627265 -145037088 + MIR SINE MIR 58 144 -118 761 220 6 17 chr1 97627389 97627566 -145036787 - MER5B DNA MER1_type -3 175 1 395 303 171 7 chr1 97627699 97627851 -145036502 + MER5A DNA MER1_type 13 189 0 249 33 0 0 chr1 97627866 97627896 -145036457 + (TC)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr1 97628016 97628037 -145036316 + (T)n Simple_repeat Simple_repeat 1 21 0 220 195 0 0 chr1 97631070 97631111 -145033242 + (CA)n Simple_repeat Simple_repeat 2 42 0 209 161 0 0 chr1 97631605 97631636 -145032717 + polypyrimidine Low_complexity Low_complexity 3 33 0 334 231 252 21 chr1 97631689 97631832 -145032521 + MIR3 SINE MIR 21 196 -12 215 326 41 58 chr1 97631972 97632144 -145032209 - L3b LINE CR1 -185 1398 1230 1569 96 0 5 chr1 97633075 97633283 -145031070 + AluSg/x SINE Alu 100 306 -4 231 253 84 32 chr1 97633405 97633500 -145030853 - MIR SINE MIR 0 262 163 436 278 152 15 chr1 97633500 97633698 -145030655 - MIR SINE MIR -1 261 37 312 359 102 16 chr1 97633687 97633815 -145030538 + L2 LINE L2 3133 3271 -1 * 326 194 0 0 chr1 97633935 97633997 -145030356 - L2 LINE L2 -2 3311 3250 286 188 0 0 chr1 97634746 97634794 -145029559 + L2 LINE L2 3219 3266 -6 336 363 44 19 chr1 97634826 97634986 -145029367 + MIR3 SINE MIR 36 199 -9 485 296 104 26 chr1 97635009 97635239 -145029114 + MIR SINE MIR 10 257 -5 321 241 72 90 chr1 97635554 97635720 -145028633 + MLT1H LTR MaLR 387 549 0 283 335 92 26 chr1 97636681 97636833 -145027520 - MIR SINE MIR -98 164 3 241 314 12 12 chr1 97636839 97636925 -145027428 + MIR SINE MIR 168 253 -9 375 244 92 8 chr1 97637558 97637677 -145026676 + L2 LINE L2 3142 3270 -2 446 285 44 19 chr1 97639268 97639426 -145024927 + MIR SINE MIR 83 244 -18 415 280 53 77 chr1 97640167 97640335 -145024018 + MIR SINE MIR 7 171 -91 871 167 32 16 chr1 97640335 97640521 -145023832 - MER53 DNA DNA 0 189 1 415 280 53 77 chr1 97640521 97640559 -145023794 + MIR SINE MIR 171 208 -54 186 133 0 0 chr1 97641314 97641344 -145023009 + (T)n Simple_repeat Simple_repeat 1 30 0 792 241 64 5 chr1 97642166 97642369 -145021984 + MIR SINE MIR 48 262 0 812 210 6 6 chr1 97643162 97643343 -145021010 - MER45B DNA AcHobo -8 1032 852 2487 209 46 54 chr1 97643375 97644005 -145020348 - MER45B DNA AcHobo -411 629 5 207 176 0 0 chr1 97647264 97647298 -145017055 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 360 252 8 17 chr1 97647792 97647911 -145016442 + (TA)n Simple_repeat Simple_repeat 2 119 0 326 257 14 0 chr1 97648134 97648204 -145016149 + L2 LINE L2 3202 3272 0 1150 262 139 31 chr1 97648337 97648722 -145015631 - MER34 LTR ERV1 0 542 91 2197 135 46 3 chr1 97648722 97649071 -145015282 + THE1B LTR MaLR 1 364 0 1150 262 139 31 chr1 97649071 97649174 -145015179 - MER34 LTR ERV1 -451 91 1 234 0 0 0 chr1 97649311 97649337 -145015016 + (A)n Simple_repeat Simple_repeat 1 26 0 655 305 24 28 chr1 97649425 97649638 -145014715 + MIR SINE MIR 2 213 -49 998 188 65 4 chr1 97651714 97651975 -145012378 - MER33 DNA MER1_type -22 302 26 239 77 0 26 chr1 97653379 97653418 -145010935 + (GAAAA)n Simple_repeat Simple_repeat 5 42 0 2661 162 28 0 chr1 97653787 97654250 -145010103 + L1MC1 LINE L1 5840 6315 -18 254 372 0 0 chr1 97654301 97654387 -145009966 - MIR SINE MIR -66 142 57 361 303 37 0 chr1 97654631 97654740 -145009613 + L2 LINE L2 3160 3272 0 263 211 123 0 chr1 97655992 97656049 -145008304 + L2 LINE L2 3250 3313 0 2019 189 76 2 chr1 97656522 97656919 -145007434 + MSTB LTR MaLR 1 426 0 204 40 0 0 chr1 97658305 97658330 -145006023 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 468 346 75 9 chr1 97660077 97660291 -145004062 + MIR SINE MIR 15 242 -20 877 232 14 32 chr1 97661562 97661782 -145002571 + MER20 DNA MER1_type 1 216 -3 280 348 35 14 chr1 97662250 97662391 -145001962 - MIR3 SINE MIR -7 201 58 469 279 251 1 chr1 97663192 97663367 -145000986 + MIR SINE MIR 25 241 -21 198 315 0 0 chr1 97663333 97663387 -145000966 + L2 LINE L2 3253 3306 -7 * 414 0 0 0 chr1 97664862 97664908 -144999445 + (TC)n Simple_repeat Simple_repeat 2 47 0 448 327 74 22 chr1 97665118 97665387 -144998966 - MLT1I LTR MaLR -20 389 107 250 208 10 158 chr1 97665486 97665544 -144998809 + MIR SINE MIR 52 90 -172 1801 129 111 7 chr1 97665544 97665824 -144998529 + AluSg1 SINE Alu 1 309 0 250 208 10 158 chr1 97665824 97665866 -144998487 + MIR SINE MIR 90 137 -125 427 270 74 58 chr1 97665871 97666257 -144998096 + MLT1I LTR MaLR 20 409 0 239 250 26 13 chr1 97666277 97666353 -144998000 + LTR33A LTR ERVL 447 523 0 238 341 83 23 chr1 97666357 97666489 -144997864 - L2 LINE L2 -200 3072 2933 616 377 49 46 chr1 97666644 97667236 -144997117 - L2 LINE L2 -548 2766 2173 2325 117 8 36 chr1 97667355 97667739 -144996614 + THE1C LTR MaLR 1 373 -2 182 341 45 82 chr1 97668158 97668560 -144995793 - L2 LINE L2 -2303 1011 625 1121 236 85 57 chr1 97669552 97669989 -144994364 + MLT2B1 LTR ERVL 1 449 -71 192 77 0 0 chr1 97669989 97670015 -144994338 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 352 221 0 39 chr1 97670145 97670249 -144994104 + LTR67 LTR ERVL 458 557 0 193 353 73 59 chr1 97670476 97670915 -144993438 + L3 LINE CR1 300 744 -833 28 20 0 40 chr1 97671421 97671440 -144992913 + AT_rich Low_complexity Low_complexity 1 19 -29 2088 131 3 0 chr1 97671440 97671759 -144992594 + AluSq SINE Alu 1 320 0 28 20 0 40 chr1 97671759 97671788 -144992565 + AT_rich Low_complexity Low_complexity 19 48 0 588 266 94 35 chr1 97672046 97672332 -144992021 - MLT1J2 LTR MaLR -147 303 1 293 259 170 37 chr1 97672461 97672596 -144991757 - MIR SINE MIR -76 186 34 238 288 36 27 chr1 97672738 97672849 -144991504 - MIR SINE MIR -9 253 142 262 302 10 31 chr1 97674146 97674242 -144990111 - L2 LINE L2 0 3313 3220 2235 293 52 47 chr1 97674273 97675404 -144988949 - L2 LINE L2 -197 3116 1988 352 250 170 25 chr1 97675769 97675969 -144988384 - MIR SINE MIR -12 250 22 22 35 0 0 chr1 97676523 97676552 -144987801 + AT_rich Low_complexity Low_complexity 1 29 0 280 348 6 37 chr1 97677757 97677918 -144986435 + MIR SINE MIR 48 203 -59 272 238 0 0 chr1 97678676 97678739 -144985614 + MIR SINE MIR 179 241 -21 206 180 40 0 chr1 97679193 97679243 -144985110 + (TATG)n Simple_repeat Simple_repeat 3 54 0 196 288 14 27 chr1 97679248 97679321 -144985032 - L2 LINE L2 -67 3246 3175 810 192 60 0 chr1 97680324 97680475 -144983878 - FRAM SINE Alu -17 159 1 349 303 26 7 chr1 97680477 97680629 -144983724 - L1MC4a LINE L1 -1983 5825 5671 340 93 56 19 chr1 97680648 97680756 -144983597 + (TA)n Simple_repeat Simple_repeat 2 113 0 23 68 0 0 chr1 97681124 97681168 -144983185 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 97682291 97682313 -144982040 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 97682410 97682432 -144981921 + AT_rich Low_complexity Low_complexity 1 22 0 201 237 0 0 chr1 97683178 97683237 -144981116 + (TA)n Simple_repeat Simple_repeat 1 59 0 291 28 0 0 chr1 97683936 97683972 -144980381 + (CA)n Simple_repeat Simple_repeat 1 36 0 295 303 0 11 chr1 97684819 97684908 -144979445 + GA-rich Low_complexity Low_complexity 4 91 0 707 123 9 0 chr1 97735816 97735922 -144928431 + AluJb SINE Alu 191 297 -15 210 91 0 0 chr1 97737622 97737655 -144926698 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 195 114 0 0 chr1 97741745 97741780 -144922573 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2134 81 0 0 chr1 97742008 97742281 -144922072 - AluY SINE Alu -16 295 23 423 294 33 7 chr1 97746197 97746350 -144918003 + MLT1J2 LTR MaLR 1 157 -293 225 295 0 0 chr1 97746458 97746519 -144917834 + MLT1J2 LTR MaLR 346 406 -44 195 304 244 22 chr1 97746638 97746773 -144917580 - L2 LINE L2 -5 3267 3103 279 0 0 0 chr1 97747156 97747187 -144917166 + (CA)n Simple_repeat Simple_repeat 2 32 0 348 43 0 0 chr1 97748826 97748872 -144915481 + (CA)n Simple_repeat Simple_repeat 1 46 0 231 253 11 23 chr1 97749282 97749369 -144914984 + L1MEd LINE L1 974 1059 -5060 418 335 61 47 chr1 97749413 97749989 -144914364 + HAL1 LINE L1 1185 1768 -739 1738 213 27 5 chr1 97750203 97750579 -144913774 - MER63B DNA MER1_type -52 384 1 25 65 0 0 chr1 97750619 97750665 -144913688 + AT_rich Low_complexity Low_complexity 1 46 0 204 231 0 0 chr1 97750675 97750727 -144913626 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 323 291 126 35 chr1 97750734 97750933 -144913420 + HAL1 LINE L1 880 1096 -1411 332 248 161 27 chr1 97752235 97752384 -144911969 + MIR3 SINE MIR 34 202 -6 1757 252 92 4 chr1 97752896 97753428 -144910925 + MER119 DNA MER1_type 5 583 0 307 145 0 40 chr1 97753517 97753593 -144910760 + (GGA)n Simple_repeat Simple_repeat 3 75 0 266 284 11 11 chr1 97753605 97753693 -144910660 - MIR SINE MIR -1 261 174 195 202 50 118 chr1 97753895 97754014 -144910339 - MIR SINE MIR -22 240 130 1984 116 0 38 chr1 97754865 97755157 -144909196 - AluSc SINE Alu -26 283 3 405 308 60 8 chr1 97755863 97755980 -144908373 - MIR3 SINE MIR -54 154 32 224 336 76 50 chr1 97756100 97756219 -144908134 - L2 LINE L2 -5 3267 3146 235 345 34 34 chr1 97757465 97757584 -144906769 - L2 LINE L2 0 3272 3154 319 314 59 0 chr1 97757921 97758023 -144906330 - MER91C DNA MER1_type -32 108 1 555 233 208 5 chr1 97758220 97758422 -144905931 - MIR SINE MIR -8 254 12 2322 96 0 3 chr1 97758426 97758738 -144905615 + AluY SINE Alu 1 311 0 1604 308 115 23 chr1 97758779 97759806 -144904547 - L2 LINE L2 0 3313 2191 180 269 219 65 chr1 97759806 97760007 -144904346 - L2 LINE L2 -1068 2246 2015 293 341 104 17 chr1 97760158 97760331 -144904022 + MIR SINE MIR 57 244 -18 478 274 99 35 chr1 97760363 97760564 -144903789 + MIR SINE MIR 6 219 -43 1647 203 22 19 chr1 97761608 97761972 -144902381 + MLT1A1 LTR MaLR 1 365 0 356 264 66 0 chr1 97762269 97762360 -144901993 + MIR SINE MIR 93 189 -73 25 31 0 0 chr1 97762603 97762635 -144901718 + AT_rich Low_complexity Low_complexity 1 32 0 365 311 157 56 chr1 97763433 97763739 -144900614 - L2 LINE L2 0 3272 2936 193 257 171 0 chr1 97763739 97763809 -144900544 + L2 LINE L2 3231 3312 -1 449 309 34 47 chr1 97764303 97764452 -144899901 + MER91A DNA MER1_type 28 174 -22 341 280 185 35 chr1 97766167 97766367 -144897986 + MIR SINE MIR 20 249 -13 21 0 0 0 chr1 97767485 97767506 -144896847 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr1 97768005 97768031 -144896322 + (TA)n Simple_repeat Simple_repeat 2 27 0 435 330 109 53 chr1 97768694 97769033 -144895320 - L2 LINE L2 0 3272 2915 2124 120 3 0 chr1 97769670 97769971 -144894382 - AluSx SINE Alu -10 302 1 240 231 46 15 chr1 97769971 97770036 -144894317 + MIR SINE MIR 66 132 -130 868 170 74 84 chr1 97770216 97770539 -144893814 - MER33 DNA MER1_type 0 324 5 2229 102 0 3 chr1 97770826 97771119 -144893234 + AluSg SINE Alu 1 292 -18 386 331 76 7 chr1 97771124 97771269 -144893084 + MIR3 SINE MIR 14 168 -40 529 238 38 12 chr1 97771293 97771453 -144892900 - L1ME1 LINE L1 -7 6159 5996 1352 175 25 66 chr1 97771561 97771881 -144892472 - L1ME1 LINE L1 -554 5610 5304 876 247 84 3 chr1 97771923 97772231 -144892122 - L1ME1 LINE L1 -940 5206 4874 204 40 0 0 chr1 97773449 97773474 -144890879 + (TG)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr1 97773564 97773586 -144890767 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr1 97773750 97773771 -144890582 + (TG)n Simple_repeat Simple_repeat 2 22 0 23 78 0 0 chr1 97773961 97774012 -144890341 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr1 97774371 97774392 -144889961 + AT_rich Low_complexity Low_complexity 1 21 0 1674 177 17 17 chr1 97774720 97775014 -144889339 - AluJo SINE Alu -16 296 3 211 338 14 0 chr1 97775090 97775164 -144889189 + L2 LINE L2 3239 3313 0 611 181 154 33 chr1 97776641 97776823 -144887530 + MIR SINE MIR 56 259 -3 376 311 109 0 chr1 97777489 97777608 -144886745 - L2 LINE L2 -1 3271 3140 515 334 58 65 chr1 97778199 97778612 -144885741 + L2 LINE L2 2851 3260 -12 225 289 19 0 chr1 97778755 97778807 -144885546 - L2 LINE L2 -12 3260 3208 199 306 212 0 chr1 97778789 97778874 -144885479 + MIR SINE MIR 46 148 -114 * 221 278 86 73 chr1 97779023 97779174 -144885179 - L2 LINE L2 -834 2480 2328 398 258 180 12 chr1 97779276 97779443 -144884910 - L2 LINE L2 -1 3312 3118 247 333 104 56 chr1 97779430 97779787 -144884566 - L2 LINE L2 -1068 2246 1873 * 551 53 13 0 chr1 97780614 97780689 -144883664 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 1455 230 0 20 chr1 97783398 97783698 -144880655 + AluJo SINE Alu 2 295 -17 2144 73 234 8 chr1 97783698 97784082 -144880271 - L1PA7 LINE L1 -811 5335 4865 6326 55 9 0 chr1 97784082 97784883 -144879470 + L1PA7 LINE L1 5347 6154 0 353 309 159 0 chr1 97785197 97785323 -144879030 - L2 LINE L2 -5 3267 3122 286 352 30 30 chr1 97785539 97785738 -144878615 - L3b LINE CR1 -233 1350 1152 414 314 92 22 chr1 97786183 97786412 -144877941 + MIR SINE MIR 9 253 -9 517 296 41 6 chr1 97786987 97787156 -144877197 + MLT1L LTR MaLR 410 584 -31 345 262 116 38 chr1 97788391 97788632 -144875721 + MLT1J LTR MaLR 153 476 -35 35 0 0 0 chr1 97789873 97789908 -144874445 + AT_rich Low_complexity Low_complexity 1 35 0 380 227 34 119 chr1 97790559 97790802 -144873551 + L1ME3A LINE L1 5810 6039 -131 182 198 12 35 chr1 97791659 97791745 -144872608 + (TA)n Simple_repeat Simple_repeat 2 85 0 1889 210 78 10 chr1 97792493 97792979 -144871374 + Charlie1b DNA MER1_type 5 523 0 33 25 0 0 chr1 97793114 97793154 -144871199 + AT_rich Low_complexity Low_complexity 1 40 0 371 316 151 5 chr1 97795076 97795294 -144869059 - MIR SINE MIR -1 261 12 2319 124 45 5 chr1 97795300 97795679 -144868674 + MSTA LTR MaLR 1 394 -34 1236 43 0 6 chr1 97796379 97796543 -144867810 + L1P LINE L1 5017 5179 -967 1489 296 104 14 chr1 97797091 97797848 -144866505 + L2 LINE L2 2431 3272 0 209 214 0 36 chr1 97798276 97798332 -144866021 + GA-rich Low_complexity Low_complexity 3 56 0 672 227 52 6 chr1 97801579 97801751 -144862602 + MIR SINE MIR 70 249 -13 1805 172 3 7 chr1 97802907 97803215 -144861138 + AluJb SINE Alu 1 307 -5 584 280 158 22 chr1 97804212 97804523 -144859830 + Charlie7 DNA MER1_type 40 392 -2220 1814 253 169 27 chr1 97804546 97804590 -144859763 + Charlie7 DNA MER1_type 1358 1394 -1218 2316 93 3 0 chr1 97804590 97804890 -144859463 + AluY SINE Alu 1 301 -10 1814 253 169 27 chr1 97804890 97805943 -144858410 + Charlie7 DNA MER1_type 1394 2611 -1 233 219 141 0 chr1 97806215 97806279 -144858074 - L2 LINE L2 0 3313 3241 561 236 91 18 chr1 97807094 97807259 -144857094 - MIR SINE MIR -74 188 12 1282 161 77 7 chr1 97807270 97807551 -144856802 + MER33 DNA MER1_type 1 294 -30 235 257 14 29 chr1 97810307 97810377 -144853976 + GA-rich Low_complexity Low_complexity 5 73 0 267 250 12 25 chr1 97810492 97810572 -144853781 + CT-rich Low_complexity Low_complexity 2 80 0 723 258 14 29 chr1 97810885 97811094 -144853259 - MIR SINE MIR -1 261 56 228 300 0 0 chr1 97815632 97815692 -144848661 + L2 LINE L2 3254 3313 0 238 250 0 0 chr1 97819042 97819086 -144845267 - MIR SINE MIR -157 105 62 26 30 0 0 chr1 97819723 97819756 -144844597 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr1 97820218 97820245 -144844108 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr1 97820298 97820320 -144844033 + (T)n Simple_repeat Simple_repeat 1 22 0 3325 226 34 8 chr1 97823555 97824381 -144839972 + L1MC3 LINE L1 6938 7784 -1 258 245 20 20 chr1 97824536 97824634 -144839719 + (CATA)n Simple_repeat Simple_repeat 4 101 0 354 333 40 32 chr1 97824668 97824794 -144839559 - L2 LINE L2 0 3272 3146 516 302 28 39 chr1 97824878 97825060 -144839293 + MIR SINE MIR 32 211 -51 350 323 6 57 chr1 97825255 97825413 -144838940 - MIR SINE MIR -83 179 30 23 0 0 0 chr1 97826175 97826198 -144838155 + AT_rich Low_complexity Low_complexity 1 23 0 201 414 27 0 chr1 97826273 97826384 -144837969 - L2 LINE L2 -235 3037 2924 1457 120 88 0 chr1 97826483 97826699 -144837654 + AluSx SINE Alu 47 281 -31 198 0 0 0 chr1 97826702 97826724 -144837629 + (CAA)n Simple_repeat Simple_repeat 2 23 0 313 250 12 12 chr1 97826968 97827048 -144837305 - LTR33A LTR ERVL 0 523 444 1703 78 22 4 chr1 97827734 97827966 -144836387 + AluY SINE Alu 1 236 -75 2305 73 33 7 chr1 97828301 97828601 -144835752 - AluSp SINE Alu -5 308 1 458 311 104 42 chr1 97828729 97829131 -144835222 + L2 LINE L2 2878 3304 -9 1151 94 0 11 chr1 97829135 97829316 -144835037 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 477 0 0 0 chr1 97830477 97830530 -144833823 + (CA)n Simple_repeat Simple_repeat 2 54 0 840 304 8 8 chr1 97830551 97830798 -144833555 + MIR SINE MIR 3 249 -13 872 203 132 0 chr1 97830982 97831164 -144833189 - MER58A DNA MER1_type -17 207 2 191 272 44 61 chr1 97831223 97831337 -144833016 - L3b LINE CR1 -133 1450 1339 315 313 119 0 chr1 97831497 97831657 -144832696 + L2 LINE L2 2506 2684 -630 199 284 54 14 chr1 97834062 97834136 -144830217 - L2 LINE L2 -7 3265 3189 211 306 0 0 chr1 97835451 97835500 -144828853 - L2 LINE L2 -38 3234 3186 489 271 83 11 chr1 97835743 97835924 -144828429 - MIR SINE MIR -21 241 48 225 286 29 0 chr1 97836829 97836899 -144827454 - MIR SINE MIR -110 152 81 206 219 188 62 chr1 97839038 97839102 -144825251 - L2 LINE L2 0 3272 3201 22 0 0 0 chr1 97839538 97839560 -144824793 + AT_rich Low_complexity Low_complexity 1 22 0 485 273 0 38 chr1 97839588 97839720 -144824633 + L3 LINE CR1 1216 1342 -235 7708 20 0 1 chr1 97839890 97841034 -144823319 + L1PA3 LINE L1 5010 6152 -3 892 263 125 3 chr1 97842678 97843013 -144821340 - L1MDa LINE L1 -4216 2190 1815 1406 134 126 0 chr1 97843050 97843288 -144821065 + AluSg SINE Alu 38 305 -5 1338 190 45 24 chr1 97843299 97844141 -144820212 - L1MDa LINE L1 -4621 1785 855 252 265 73 0 chr1 97844552 97844620 -144819733 + L2 LINE L2 3179 3251 -62 212 318 69 47 chr1 97845770 97846003 -144818350 + L2 LINE L2 2815 3052 -220 244 326 22 0 chr1 97846118 97846210 -144818143 - MER5A DNA MER1_type -5 184 91 2021 201 117 43 chr1 97846210 97846796 -144817557 + MLT1E2 LTR MaLR 3 621 -5 232 186 23 0 chr1 97846800 97846843 -144817510 - MER5A DNA MER1_type -92 97 54 579 283 251 17 chr1 97847515 97847869 -144816484 - L3 LINE CR1 -3 1574 1138 389 303 48 43 chr1 97849669 97849857 -144814496 - MIR SINE MIR -51 211 23 484 319 28 94 chr1 97849972 97850260 -144814093 - L2 LINE L2 0 3272 3004 343 365 58 29 chr1 97850354 97850696 -144813657 - L2 LINE L2 -474 2840 2489 637 282 33 33 chr1 97851213 97851426 -144812927 + MIR SINE MIR 16 228 -34 466 331 41 11 chr1 97852760 97852932 -144811421 - MIR3 SINE MIR -1 207 31 24 53 0 0 chr1 97853679 97853717 -144810636 + AT_rich Low_complexity Low_complexity 1 38 0 239 167 60 36 chr1 97853717 97853801 -144810552 - L1ME4a LINE L1 -4 6117 6032 1413 193 19 22 chr1 97854166 97854477 -144809876 + L1MA9 LINE L1 5978 6287 -25 26 0 0 0 chr1 97854937 97854963 -144809390 + AT_rich Low_complexity Low_complexity 1 26 0 192 77 0 0 chr1 97855035 97855061 -144809292 + (CATA)n Simple_repeat Simple_repeat 2 27 0 331 261 72 14 chr1 97855073 97855211 -144809142 - L1ME LINE L1 -434 5687 5542 390 287 73 37 chr1 97856018 97856097 -144808256 - MIR SINE MIR -89 173 98 234 0 0 0 chr1 97856097 97856123 -144808230 + (TC)n Simple_repeat Simple_repeat 1 26 0 390 287 73 37 chr1 97856123 97856207 -144808146 - MIR SINE MIR -164 98 4 301 386 8 0 chr1 97856666 97856793 -144807560 - MIR3 SINE MIR -48 160 33 2393 59 0 0 chr1 97856966 97857253 -144807100 + AluY SINE Alu 1 287 -24 528 356 55 53 chr1 97857354 97858062 -144806291 - L2 LINE L2 -10 3262 2554 21 0 0 0 chr1 97858549 97858570 -144805783 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 97859225 97859247 -144805106 + AT_rich Low_complexity Low_complexity 1 22 0 994 293 78 22 chr1 97860409 97861056 -144803297 + L2 LINE L2 2636 3313 0 436 279 16 8 chr1 97861123 97861252 -144803101 + MIR SINE MIR 102 231 -31 213 139 23 0 chr1 97861596 97861639 -144802714 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 579 245 22 0 chr1 97862133 97862272 -144802081 + MER103 DNA DNA 20 161 -5 6011 57 5 4 chr1 97862637 97863394 -144800959 - L1PA7 LINE L1 -20 6134 5377 2398 86 0 3 chr1 97865387 97865690 -144798663 - AluY SINE Alu -9 302 1 27 29 0 0 chr1 97865856 97865890 -144798463 + AT_rich Low_complexity Low_complexity 1 34 0 13324 83 3 1 chr1 97868477 97869222 -144795131 + L1PA7 LINE L1 3506 4248 -1906 2167 100 3 34 chr1 97869222 97869542 -144794811 + AluY SINE Alu 1 310 -1 13324 83 3 1 chr1 97869542 97871460 -144792893 + L1PA7 LINE L1 4248 6141 -13 650 298 89 23 chr1 97871491 97871928 -144792425 + L1MEd LINE L1 456 921 -5198 270 0 0 0 chr1 97871947 97871977 -144792376 + (CA)n Simple_repeat Simple_repeat 2 31 0 342 305 146 20 chr1 97872517 97872763 -144791590 + L1ME3A LINE L1 1008 1284 -5132 315 264 92 61 chr1 97872866 97873029 -144791324 + L1ME3A LINE L1 1138 1305 -5121 340 291 94 5 chr1 97873171 97873394 -144790959 + L1ME3A LINE L1 1724 1966 -4641 431 264 58 6 chr1 97873420 97873594 -144790759 + L1ME3A LINE L1 4780 4962 -1464 308 314 69 25 chr1 97873617 97873776 -144790577 + L1ME3A LINE L1 6065 6230 -220 184 128 21 21 chr1 97873832 97873879 -144790474 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 21 82 0 0 chr1 97874048 97874097 -144790256 + AT_rich Low_complexity Low_complexity 1 49 0 542 171 0 89 chr1 97874276 97874399 -144789954 + MLT1B LTR MaLR 1 112 -278 1622 160 7 28 chr1 97874442 97874729 -144789624 - AluJb SINE Alu -24 288 8 1172 150 3 173 chr1 97874736 97875089 -144789264 + MLT1B LTR MaLR 98 390 0 22 70 0 0 chr1 97875697 97875740 -144788613 + AT_rich Low_complexity Low_complexity 1 43 0 240 275 158 25 chr1 97875938 97876058 -144788295 + MIR SINE MIR 117 252 -10 23 33 0 0 chr1 97876295 97876325 -144788028 + AT_rich Low_complexity Low_complexity 1 30 0 786 327 175 31 chr1 97876424 97877373 -144786980 - L3 LINE CR1 -16 1561 476 1662 171 0 30 chr1 97877487 97877791 -144786562 - AluJb SINE Alu -17 295 1 308 189 14 0 chr1 97877959 97878033 -144786320 + GA-rich Low_complexity Low_complexity 4 78 0 372 339 134 31 chr1 97878638 97879209 -144785144 + L2 LINE L2 2438 3064 -208 77 31 0 0 chr1 97879480 97879578 -144784775 + AT_rich Low_complexity Low_complexity 1 98 0 577 298 101 74 chr1 97879640 97880164 -144784189 - L2 LINE L2 -38 3275 2738 186 328 82 0 chr1 97880245 97880306 -144784047 + L2 LINE L2 2577 2642 -672 1905 228 93 39 chr1 97880865 97881885 -144782468 - L1ME1 LINE L1 -76 6159 5055 3076 275 90 46 chr1 97881893 97884968 -144779385 - L1ME1 LINE L1 -3024 3191 37 848 235 95 5 chr1 97885523 97885744 -144778609 - MIR SINE MIR -10 252 12 444 325 123 7 chr1 97885753 97885907 -144778446 + MER5B DNA MER1_type 7 178 0 507 277 174 62 chr1 97886921 97886986 -144777367 - MLT1I LTR MaLR 0 409 353 997 40 0 8 chr1 97886986 97887131 -144777222 - L1PA2 LINE L1 0 6155 6021 507 277 174 62 chr1 97887131 97887433 -144776920 - MLT1I LTR MaLR -56 353 1 226 183 17 33 chr1 97888468 97888528 -144775825 - MLT1I-int LTR MaLR -1674 61 3 1103 284 65 29 chr1 97888529 97888913 -144775440 - MLT1I LTR MaLR 0 409 12 23 0 0 0 chr1 97890369 97890392 -144773961 + AT_rich Low_complexity Low_complexity 1 23 0 602 257 115 59 chr1 97890531 97890945 -144773408 + MLT1H LTR MaLR 102 542 0 25 31 0 0 chr1 97892190 97892222 -144772131 + AT_rich Low_complexity Low_complexity 1 32 0 252 73 0 0 chr1 97892988 97893029 -144771324 - L1MA3 LINE L1 0 6305 6265 1046 95 7 0 chr1 97892989 97893137 -144771216 - L1MA2 LINE L1 0 6304 6156 1050 45 8 0 chr1 97893137 97893270 -144771083 + L1MA3 LINE L1 5867 6000 -305 243 282 24 81 chr1 97894868 97894992 -144769361 - MIR SINE MIR -46 216 100 408 268 111 7 chr1 97895771 97895924 -144768429 + MIR SINE MIR 32 200 -62 285 337 72 30 chr1 97897053 97897219 -144767134 + MIR SINE MIR 35 207 -55 21 36 0 0 chr1 97899249 97899277 -144765076 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr1 97899448 97899469 -144764884 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 213 253 101 20 chr1 97901797 97901896 -144762457 - MIR SINE MIR 0 262 156 207 246 72 29 chr1 97902331 97902400 -144761953 + L2 LINE L2 3241 3312 -1 378 0 0 0 chr1 97902522 97902564 -144761789 + (TG)n Simple_repeat Simple_repeat 1 42 0 234 0 0 0 chr1 97902563 97902589 -144761764 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 2306 106 0 10 chr1 97903337 97903677 -144760676 - AluSx SINE Alu 0 312 1 243 0 0 0 chr1 97904437 97904464 -144759889 + (A)n Simple_repeat Simple_repeat 1 27 0 1707 171 3 16 chr1 97905030 97905335 -144759018 + AluJb SINE Alu 1 301 -11 609 264 105 42 chr1 97905560 97905799 -144758554 + MIR SINE MIR 2 255 -7 1867 95 0 4 chr1 97906017 97906259 -144758094 + AluSx SINE Alu 4 244 -68 2303 120 8 37 chr1 97906692 97907067 -144757286 - THE1B LTR MaLR 0 364 1 688 269 12 6 chr1 97907608 97907779 -144756574 + L3 LINE CR1 630 801 -776 629 350 100 25 chr1 97907779 97908139 -144756214 + L3 LINE CR1 1054 1440 -137 343 245 86 36 chr1 97908390 97908529 -144755824 - MIR SINE MIR 0 262 117 284 331 111 36 chr1 97908627 97908987 -144755366 + L2 LINE L2 2921 3307 -6 234 272 12 62 chr1 97909130 97909211 -144755142 + L2 LINE L2 2714 2790 -524 549 289 199 39 chr1 97909858 97910326 -144754027 + L1ME4a LINE L1 5522 6064 -57 21 0 0 0 chr1 97910355 97910376 -144753977 + AT_rich Low_complexity Low_complexity 1 21 0 1710 161 26 108 chr1 97911145 97911673 -144752680 - MER31A LTR ERV1 0 485 1 248 402 9 0 chr1 97911924 97912031 -144752322 + MIR SINE MIR 34 141 -67 911 172 52 6 chr1 97912135 97912309 -144752044 + MER20 DNA MER1_type 33 214 -5 21 0 0 0 chr1 97913148 97913169 -144751184 + AT_rich Low_complexity Low_complexity 1 21 0 345 302 107 12 chr1 97913911 97914080 -144750273 + MIR SINE MIR 28 212 -50 2364 66 13 3 chr1 97915676 97915977 -144748376 - AluY SINE Alu -7 304 1 913 208 0 0 chr1 97916212 97916385 -144747968 - FRAM SINE Alu -3 173 1 283 313 64 31 chr1 97916514 97916671 -144747682 + MIR SINE MIR 41 200 -62 422 254 76 8 chr1 97916904 97917022 -144747331 - L2 LINE L2 0 3313 3188 205 250 0 19 chr1 97917188 97917240 -144747113 + L2 LINE L2 3257 3307 -6 602 249 76 25 chr1 97919984 97920181 -144744172 - MIR SINE MIR -40 222 16 237 108 0 0 chr1 97922639 97922676 -144741677 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 97922885 97922908 -144741445 + AT_rich Low_complexity Low_complexity 1 23 0 1024 210 50 126 chr1 97923173 97923660 -144740693 + MER39 LTR ERV1 255 585 0 229 216 0 0 chr1 97924557 97924608 -144739745 + A-rich Low_complexity Low_complexity 1 51 0 582 309 38 49 chr1 97926428 97926693 -144737660 - MIR SINE MIR 0 262 1 962 176 78 21 chr1 97926860 97927053 -144737300 + MER3 DNA MER1_type 1 204 -5 310 256 44 33 chr1 97927099 97927189 -144737164 - L2 LINE L2 0 3313 3223 617 313 74 68 chr1 97927199 97927835 -144736518 - L2 LINE L2 -1224 2090 1451 2133 110 32 0 chr1 97929304 97929586 -144734767 + AluSc SINE Alu 1 291 -18 24 0 0 0 chr1 97929586 97929610 -144734743 + AT_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr1 97929610 97929647 -144734706 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr1 97930902 97930924 -144733429 + AT_rich Low_complexity Low_complexity 1 22 0 390 340 62 51 chr1 97932177 97932609 -144731744 + MLT1L LTR MaLR 1 446 -142 302 307 117 22 chr1 97934105 97934242 -144730111 + L2 LINE L2 2943 3092 -180 208 352 48 29 chr1 97935249 97935354 -144728999 - L2 LINE L2 -13 3300 3194 820 281 192 13 chr1 97936571 97936952 -144727401 - L2 LINE L2 0 3313 2865 3675 106 2 4 chr1 97937072 97937584 -144726769 - MER9 LTR ERVK 0 511 1 2336 256 134 39 chr1 97938268 97939392 -144724961 + L2 LINE L2 2022 3237 -76 194 212 76 45 chr1 97939427 97939493 -144724860 + L2 LINE L2 3245 3312 -1 640 260 93 45 chr1 97939677 97939923 -144724430 + MIR SINE MIR 2 259 -3 301 218 0 39 chr1 97940126 97940204 -144724149 - MER116 DNA Mariner -5 75 1 781 81 16 0 chr1 97940512 97940635 -144723718 + (TAGA)n Simple_repeat Simple_repeat 1 125 0 333 68 0 0 chr1 97940841 97940885 -144723468 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 863 236 6 6 chr1 97940974 97941156 -144723197 - MLT2C2 LTR ERVL -48 416 235 1739 194 102 21 chr1 97941167 97941599 -144722754 + MLT1C LTR MaLR 1 467 0 402 312 41 64 chr1 97941663 97941958 -144722395 + L2 LINE L2 2534 2821 -493 237 33 0 0 chr1 97944279 97944309 -144720044 + (CA)n Simple_repeat Simple_repeat 1 30 0 183 309 181 11 chr1 97944319 97944413 -144719940 - MIR SINE MIR -148 114 5 195 313 36 24 chr1 97944453 97944536 -144719817 + MIR SINE MIR 86 169 -93 2276 102 0 0 chr1 97946937 97947231 -144717122 - AluSg SINE Alu -16 294 1 306 0 0 0 chr1 97947585 97947619 -144716734 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr1 97948657 97948678 -144715675 + AT_rich Low_complexity Low_complexity 1 21 0 202 288 0 51 chr1 97949645 97949704 -144714649 - L2 LINE L2 -10 3262 3207 367 182 65 13 chr1 97949733 97949810 -144714543 + MIR SINE MIR 171 251 -11 310 308 50 17 chr1 97949930 97950050 -144714303 + L2 LINE L2 3149 3272 0 307 355 14 7 chr1 97950730 97950868 -144713485 + LTR67 LTR ERVL 418 556 -1 198 254 68 17 chr1 97950912 97950971 -144713382 + MIR SINE MIR 42 103 -159 1418 174 105 21 chr1 97950982 97951313 -144713040 - MSTA LTR MaLR 0 428 25 2030 133 52 17 chr1 97951313 97951675 -144712678 - THE1C LTR MaLR 0 375 1 1418 174 105 21 chr1 97951675 97951687 -144712666 - MSTA LTR MaLR -403 25 15 241 345 44 0 chr1 97951690 97951803 -144712550 + MIR SINE MIR 144 261 -1 986 246 99 71 chr1 97953012 97953519 -144710834 + MLT1H LTR MaLR 27 547 -8 302 148 37 0 chr1 97953910 97953964 -144710389 - MER94 DNA DNA -78 56 1 482 259 61 15 chr1 97954567 97954698 -144709655 - MIR SINE MIR -108 154 18 263 295 21 167 chr1 97956392 97956601 -144707752 - L2 LINE L2 -57 3215 3072 1638 217 66 10 chr1 97956601 97956993 -144707360 - MLT2D LTR ERVL 0 414 1 263 295 21 167 chr1 97956993 97957119 -144707234 - L2 LINE L2 -200 3072 2929 457 220 18 28 chr1 97957134 97957243 -144707110 + L2 LINE L2 3200 3307 -6 781 203 7 26 chr1 97957488 97957667 -144706686 - FRAM SINE Alu 0 172 1 1772 149 75 37 chr1 97958360 97958736 -144705617 + MLT1B LTR MaLR 1 390 0 411 225 23 70 chr1 97959147 97959276 -144705077 - MIR SINE MIR -65 197 75 304 192 10 125 chr1 97959283 97959338 -144705015 + MLT1J2 LTR MaLR 1 40 -410 1180 228 0 0 chr1 97959338 97959562 -144704791 + MER58A DNA MER1_type 1 224 0 304 192 10 125 chr1 97959562 97959610 -144704743 + MLT1J2 LTR MaLR 40 92 -358 368 318 122 0 chr1 97959617 97959806 -144704547 + MLT1J2 LTR MaLR 202 413 -37 234 290 80 51 chr1 97959996 97960134 -144704219 + MER117 DNA MER1_type 8 149 -48 180 0 0 0 chr1 97960508 97960528 -144703825 + (TTA)n Simple_repeat Simple_repeat 2 21 0 620 311 52 12 chr1 97962949 97963197 -144701156 + MIR SINE MIR 2 259 -3 898 311 92 20 chr1 97963197 97963589 -144700764 - L2 LINE L2 -1 3312 2893 199 292 67 79 chr1 97963605 97963694 -144700659 + MER5A DNA MER1_type 86 173 -16 278 218 35 11 chr1 97965332 97965419 -144698934 - MER117 DNA MER1_type -98 99 11 235 278 189 11 chr1 97965622 97965712 -144698641 + L2 LINE L2 3193 3298 -15 212 377 55 41 chr1 97965774 97965920 -144698433 - L2 LINE L2 -182 3090 2943 765 259 93 23 chr1 97966104 97966575 -144697778 + L1ME4a LINE L1 5615 6118 -3 2183 98 0 7 chr1 97967250 97967545 -144696808 - AluSx SINE Alu -19 293 1 329 263 13 0 chr1 97967745 97967821 -144696532 + L2 LINE L2 3233 3309 -4 381 254 56 36 chr1 97968031 97968183 -144696170 + MIR SINE MIR 3 163 -62 347 291 12 0 chr1 97968399 97968485 -144695868 - MIR SINE MIR -114 148 62 502 130 14 178 chr1 97968508 97968654 -144695699 - MLT1C LTR MaLR -343 124 3 42621 35 21 1 chr1 97969384 97975409 -144688944 + L1PA2 LINE L1 4 6150 -5 27 0 0 0 chr1 97975409 97975436 -144688917 + AT_rich Low_complexity Low_complexity 1 27 0 2186 103 23 54 chr1 97977079 97977466 -144686887 - THE1C LTR MaLR 0 375 1 246 302 106 28 chr1 97977467 97977788 -144686565 + L1M4 LINE L1 4505 4850 -1296 228 131 33 33 chr1 97978002 97978063 -144686290 + GA-rich Low_complexity Low_complexity 2 62 0 372 220 100 20 chr1 97978418 97978518 -144685835 - Charlie8 DNA MER1_type -2195 222 115 227 345 160 0 chr1 97978896 97979015 -144685338 + L2 LINE L2 2933 3070 -202 336 247 155 0 chr1 97979024 97979121 -144685232 - L2 LINE L2 -10 3303 3192 225 323 54 23 chr1 97980587 97980717 -144683636 - L2 LINE L2 -2 3270 3137 205 103 0 51 chr1 97981312 97981351 -144683002 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1280 294 46 5 chr1 97982628 97983060 -144681293 + LTR16A LTR ERVL 1 450 0 452 316 72 24 chr1 97985558 97985767 -144678586 + HAL1 LINE L1 1136 1354 -1153 446 267 68 23 chr1 97985780 97986001 -144678352 + HAL1 LINE L1 1554 1784 -723 234 261 76 43 chr1 97986446 97986630 -144677723 + HAL1b LINE L1 748 937 -411 357 357 32 11 chr1 97986719 97986904 -144677449 + HAL1 LINE L1 2245 2433 -74 303 238 24 36 chr1 97987343 97987427 -144676926 - MLT1K LTR MaLR 0 588 506 262 279 68 84 chr1 97988266 97988517 -144675836 - MARNA DNA Mariner -204 382 136 183 42 0 0 chr1 97988539 97988563 -144675790 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5997 135 13 9 chr1 97988563 97990019 -144674334 - L1PB2 LINE L1 -6 6145 4685 356 194 0 0 chr1 97990072 97990144 -144674209 - L1PB1 LINE L1 -123 6028 5957 619 274 18 6 chr1 97990220 97990384 -144673969 - MER58B DNA MER1_type 0 341 176 1202 189 26 99 chr1 97990394 97990442 -144673911 - MLT2B3 LTR ERVL -2 552 502 580 62 0 37 chr1 97990442 97990523 -144673830 + MADE1 DNA Mariner 1 78 -2 1202 189 26 99 chr1 97990523 97990776 -144673577 - MLT2B3 LTR ERVL -52 502 273 * 2111 196 33 2 chr1 97990773 97991170 -144673183 - MLT2B1 LTR ERVL -109 411 3 21 82 0 0 chr1 97992356 97992405 -144671948 + AT_rich Low_complexity Low_complexity 1 49 0 1277 253 208 25 chr1 97992483 97993012 -144671341 + MLT1E2 LTR MaLR 1 626 0 1209 276 115 30 chr1 97993087 97993915 -144670438 - HAL1b LINE L1 -229 1119 190 23 0 0 0 chr1 97993915 97993938 -144670415 + AT_rich Low_complexity Low_complexity 1 23 0 1209 276 115 30 chr1 97993938 97993963 -144670390 - HAL1b LINE L1 -1158 190 169 230 313 0 24 chr1 97995510 97995593 -144668760 - Tigger3(Golem) DNA MER2_type -1954 1075 995 2167 124 0 3 chr1 97996370 97996677 -144667676 + AluSx SINE Alu 5 310 -2 25 0 0 0 chr1 98000486 98000511 -144663842 + AT_rich Low_complexity Low_complexity 1 25 0 879 237 123 14 chr1 98000548 98000767 -144663586 - MIR SINE MIR 0 262 20 526 270 81 73 chr1 98001313 98001820 -144662533 - MLT1J LTR MaLR 0 511 1 482 280 21 32 chr1 98001919 98002108 -144662245 - MLT1K LTR MaLR -7 581 395 356 301 16 0 chr1 98002503 98002626 -144661727 - MER103 DNA DNA -24 142 18 325 198 99 25 chr1 98003350 98003431 -144660922 - MIR SINE MIR 0 262 176 333 0 0 0 chr1 98005366 98005403 -144658950 + (TG)n Simple_repeat Simple_repeat 2 38 0 459 279 20 34 chr1 98005621 98005768 -144658585 - MIR SINE MIR -72 190 46 4724 209 10 10 chr1 98006293 98007204 -144657149 - ERVL LTR ERVL -3557 2207 1297 1886 154 13 17 chr1 98008269 98008614 -144655739 - Charlie3 DNA MER1_type 0 2712 1 253 317 49 12 chr1 98008614 98008696 -144655657 + L2 LINE L2 3148 3232 -40 602 285 6 6 chr1 98009486 98009644 -144654709 - L1ME LINE L1 -578 5588 5431 358 319 62 37 chr1 98009649 98009922 -144654431 - L1ME LINE L1 -747 5399 5120 2427 183 7 76 chr1 98010074 98010627 -144653726 - MLT2B2 LTR ERVL 0 515 1 504 236 115 6 chr1 98010903 98011060 -144653293 - L2 LINE L2 -4 3309 3136 402 69 0 0 chr1 98011611 98011669 -144652684 + (CA)n Simple_repeat Simple_repeat 1 58 0 5936 143 20 9 chr1 98012049 98013881 -144650472 + L1PB3 LINE L1 4300 6152 -2 977 257 196 66 chr1 98013889 98014095 -144650258 - L2 LINE L2 -297 3016 2838 757 168 6 35 chr1 98014095 98014268 -144650085 - L1MA3 LINE L1 0 6305 6138 977 257 196 66 chr1 98014268 98014706 -144649647 - L2 LINE L2 -475 2838 2227 605 318 10 7 chr1 98014732 98015021 -144649332 - L1ME LINE L1 -2277 3869 3580 579 303 172 20 chr1 98015028 98015272 -144649081 - L2 LINE L2 -508 2806 2526 2348 108 0 0 chr1 98015326 98015632 -144648721 + AluSg SINE Alu 3 308 -2 21 0 0 0 chr1 98015884 98015905 -144648448 + AT_rich Low_complexity Low_complexity 1 21 0 380 291 0 0 chr1 98015937 98016040 -144648313 - MER70B LTR ERVL -18 560 458 256 304 152 54 chr1 98017536 98017708 -144646645 + MIR SINE MIR 3 192 -58 2366 93 3 0 chr1 98018432 98018744 -144645609 - AluSp SINE Alu 0 313 1 1762 251 51 21 chr1 98018744 98019273 -144645080 - MLT-int LTR MaLR -1189 546 2 2403 141 69 19 chr1 98019275 98019695 -144644658 - MSTB2 LTR MaLR 0 457 17 259 295 0 16 chr1 98019739 98019800 -144644553 - MER91B DNA MER1_type -127 63 4 2111 124 3 3 chr1 98020150 98020449 -144643904 - AluSx SINE Alu -13 299 1 21 0 0 0 chr1 98020563 98020584 -144643769 + AT_rich Low_complexity Low_complexity 1 21 0 5865 149 16 10 chr1 98020621 98021911 -144642442 + L1PB1 LINE L1 4464 5769 -382 252 0 0 0 chr1 98021911 98021939 -144642414 + (TG)n Simple_repeat Simple_repeat 2 29 0 5865 149 16 10 chr1 98021939 98022324 -144642029 + L1PB1 LINE L1 5769 6150 -1 2383 66 0 10 chr1 98023488 98023792 -144640561 + AluY SINE Alu 1 301 -10 4837 113 18 22 chr1 98023972 98024153 -144640200 + pTR5 LTR ERV1 848 1028 -1410 198 0 0 0 chr1 98024153 98024175 -144640178 + (CCCGG)n Simple_repeat Simple_repeat 3 24 0 4837 113 18 22 chr1 98024175 98025118 -144639235 + pTR5 LTR ERV1 1028 2115 -323 627 197 8 12 chr1 98025218 98025462 -144638891 + CT-rich Low_complexity Low_complexity 1 243 0 2092 236 31 86 chr1 98025473 98026428 -144637925 - L1MC5 LINE L1 -523 7438 6536 776 89 0 9 chr1 98026447 98026559 -144637794 - L1MA1 LINE L1 0 6302 6192 3794 166 11 3 chr1 98026671 98027328 -144637025 - MLT1A1-int LTR MaLR -1073 662 1 1812 191 43 3 chr1 98027328 98027352 -144637001 - MLT1A1 LTR MaLR 0 365 343 198 0 0 0 chr1 98027352 98027374 -144636979 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1812 191 43 3 chr1 98027374 98027700 -144636653 - MLT1A1 LTR MaLR -22 343 1 21 36 0 0 chr1 98027701 98027729 -144636624 + AT_rich Low_complexity Low_complexity 1 28 0 389 307 88 21 chr1 98027854 98028046 -144636307 - MLT1J1 LTR MaLR -241 205 1 552 275 5 78 chr1 98028742 98028935 -144635418 + MIR3 SINE MIR 30 208 0 25 0 0 0 chr1 98030385 98030410 -144633943 + AT_rich Low_complexity Low_complexity 1 25 0 9650 149 24 3 chr1 98030773 98033121 -144631232 - L1MA2 LINE L1 -415 5889 3491 517 81 57 8 chr1 98035613 98035737 -144628616 + (TG)n Simple_repeat Simple_repeat 1 130 0 959 173 110 16 chr1 98036635 98036826 -144627527 + MER3 DNA MER1_type 1 209 0 294 29 0 0 chr1 98036866 98036901 -144627452 + (TG)n Simple_repeat Simple_repeat 2 36 0 1554 210 86 6 chr1 98036962 98037300 -144627053 - MLT1A1 LTR MaLR 0 365 1 3405 220 83 87 chr1 98037300 98038312 -144626041 - MLT1A1-int LTR MaLR 0 1735 726 1964 195 26 15 chr1 98038312 98038701 -144625652 + MSTD LTR MaLR 4 396 0 3405 220 83 87 chr1 98038701 98038757 -144625596 - MLT1A1-int LTR MaLR -1009 726 671 356 181 75 43 chr1 98038863 98038957 -144625396 - MER106A DNA MER1_type -23 213 117 181 330 28 28 chr1 98038986 98039095 -144625258 - MIR SINE MIR -73 135 27 503 307 8 36 chr1 98041481 98041646 -144622707 - MIR SINE MIR -49 213 53 23 0 0 0 chr1 98042486 98042509 -144621844 + AT_rich Low_complexity Low_complexity 1 23 0 607 118 0 0 chr1 98042606 98042691 -144621662 - AluS SINE Alu -227 85 1 420 313 76 40 chr1 98043110 98043308 -144621045 + MIR SINE MIR 46 250 -12 198 0 0 0 chr1 98045008 98045030 -144619323 + (A)n Simple_repeat Simple_repeat 1 22 0 2569 129 13 37 chr1 98045051 98045094 -144619259 + MER65A LTR ERV1 1 44 -401 198 0 0 0 chr1 98045094 98045116 -144619237 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2569 129 13 37 chr1 98045116 98045528 -144618825 + MER65A LTR ERV1 44 445 0 348 140 0 0 chr1 98047787 98047844 -144616509 + pTR5 LTR ERV1 741 797 -1641 277 44 33 0 chr1 98047944 98047989 -144616364 + pTR5 LTR ERV1 356 2438 0 247 266 170 11 chr1 98047995 98048089 -144616264 - L2 LINE L2 -5 3308 3200 628 298 96 58 chr1 98048814 98049264 -144615089 - MLT1J LTR MaLR -30 481 15 1471 97 5 5 chr1 98049896 98050103 -144614250 - AluSq SINE Alu -13 300 94 959 285 12 0 chr1 98051646 98051899 -144612454 - MIR SINE MIR -1 261 6 402 377 0 0 chr1 98052034 98052156 -144612197 + L2 LINE L2 3142 3263 -9 274 294 32 71 chr1 98052208 98052334 -144612019 + MIR SINE MIR 16 136 -72 20188 164 35 21 chr1 98053329 98058042 -144606311 - L1 LINE L1 -2765 4800 16 21 0 0 0 chr1 98058219 98058240 -144606113 + AT_rich Low_complexity Low_complexity 1 21 0 386 179 128 0 chr1 98058492 98058570 -144605783 - L2 LINE L2 -1 3312 3225 2832 157 2 20 chr1 98058746 98059237 -144605116 - L1MB3 LINE L1 -96 6323 5842 1254 114 5 19 chr1 98059237 98059447 -144604906 - L1MA4A LINE L1 0 7722 7516 5774 156 22 30 chr1 98059457 98059831 -144604522 - L1MA4A LINE L1 -321 7401 7026 2456 85 0 0 chr1 98059831 98060137 -144604216 - AluSq SINE Alu -7 306 1 5774 156 22 30 chr1 98060137 98060305 -144604048 - L1MA4A LINE L1 -696 7026 6858 1677 201 0 0 chr1 98060305 98060594 -144603759 - AluJo SINE Alu -23 289 1 5774 156 22 30 chr1 98060594 98061715 -144602638 - L1MA4A LINE L1 -864 6858 5628 * 15530 173 37 6 chr1 98061713 98064437 -144599916 - L1MA4A LINE L1 -4738 2827 19 10882 219 59 31 chr1 98064444 98066972 -144597381 - L1M2 LINE L1 -4246 2603 5 3313 211 26 15 chr1 98066974 98068011 -144596342 - L1MB3 LINE L1 -575 5844 4793 2699 142 16 14 chr1 98068011 98068359 -144595994 - MSTA LTR MaLR -4 424 73 1752 155 67 28 chr1 98068359 98068720 -144595633 + THE1C LTR MaLR 1 375 0 2699 142 16 14 chr1 98068720 98068794 -144595559 - MSTA LTR MaLR -355 73 1 2369 161 0 5 chr1 98068794 98069185 -144595168 - MSTA-int LTR MaLR 0 1651 1263 434 105 0 0 chr1 98069191 98069248 -144595105 - MER61C LTR ERV1 -377 57 1 4932 203 31 71 chr1 98069248 98069652 -144594701 - L1MB3 LINE L1 -1582 4800 4381 3628 104 7 7 chr1 98069652 98070192 -144594161 - L1MA1 LINE L1 0 6302 5763 4932 203 31 71 chr1 98070192 98071388 -144592965 - L1MB3 LINE L1 -2001 4381 3264 314 175 0 135 chr1 98071391 98071524 -144592829 - L1PB4 LINE L1 0 6166 6055 603 217 0 0 chr1 98071524 98071685 -144592668 - L1MB3 LINE L1 -3105 3277 3117 4829 134 26 7 chr1 98071785 98072554 -144591799 + Tigger1 DNA MER2_type 892 1675 -743 358 287 90 8 chr1 98073013 98073135 -144591218 - MIR SINE MIR -49 213 82 2951 177 39 18 chr1 98073242 98074060 -144590293 - L1MB3 LINE L1 -3625 2757 1923 1706 203 0 3 chr1 98074060 98074356 -144589997 - AluJb SINE Alu -17 295 1 2951 177 39 18 chr1 98074356 98074377 -144589976 - L1MB3 LINE L1 -4459 1923 1904 2478 154 28 28 chr1 98074434 98074927 -144589426 - L1MB3 LINE L1 -4437 1947 1455 4883 156 47 0 chr1 98074928 98075736 -144588617 + Tigger1 DNA MER2_type 1 846 -1572 2085 124 0 10 chr1 98076209 98076499 -144587854 + AluSx SINE Alu 1 287 -25 189 0 0 0 chr1 98076504 98076525 -144587828 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 420 287 27 13 chr1 98076946 98077096 -144587257 - MLT1F-int LTR MaLR -819 552 401 276 263 80 22 chr1 98077149 98077286 -144587067 - MLT1F-int LTR MaLR -1225 146 2 441 310 11 27 chr1 98077287 98077471 -144586882 - MLT1F LTR MaLR 0 542 362 3395 143 15 0 chr1 98077857 98078376 -144585977 - MER1A DNA MER1_type 0 527 1 1802 252 41 37 chr1 98078481 98078659 -144585694 + MLT1F LTR MaLR 26 202 -340 1466 108 35 39 chr1 98078659 98078890 -144585463 + MER30 DNA MER1_type 1 230 0 1802 252 41 37 chr1 98078890 98079226 -144585127 + MLT1F LTR MaLR 202 542 0 23 33 0 0 chr1 98080966 98080996 -144583357 + AT_rich Low_complexity Low_complexity 1 30 0 292 338 62 100 chr1 98081316 98081636 -144582717 + L2 LINE L2 2963 3270 -2 396 0 0 0 chr1 98082184 98082228 -144582125 + (CA)n Simple_repeat Simple_repeat 1 44 0 203 213 21 0 chr1 98082417 98082464 -144581889 + A-rich Low_complexity Low_complexity 3 50 0 273 163 0 0 chr1 98082959 98083023 -144581330 + AluSp/q SINE Alu 245 308 0 1699 242 29 7 chr1 98083138 98083585 -144580768 + Charlie4a DNA MER1_type 2 458 -50 1550 205 19 32 chr1 98083632 98084003 -144580350 + MLT1A2 LTR MaLR 1 366 -8 552 30 0 0 chr1 98084025 98084091 -144580262 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 1865 154 3 3 chr1 98084093 98084391 -144579962 - 7SLRNA srpRNA srpRNA 0 320 23 423 274 178 33 chr1 98086143 98086413 -144577940 + L2 LINE L2 3003 3311 -2 2125 151 25 6 chr1 98086414 98086772 -144577581 - MLT1A1 LTR MaLR 0 365 1 1412 171 0 8 chr1 98086983 98087222 -144577131 + AluJb SINE Alu 45 281 -31 243 0 0 0 chr1 98087244 98087271 -144577082 + (TTA)n Simple_repeat Simple_repeat 3 29 0 2407 137 13 5 chr1 98087456 98087843 -144576510 + MLT1B LTR MaLR 1 390 0 365 279 146 13 chr1 98087939 98088097 -144576256 - L3b LINE CR1 -125 1458 1280 297 295 124 7 chr1 98088555 98088771 -144575582 + L2 LINE L2 2765 3013 -300 2449 238 82 41 chr1 98088943 98090010 -144574343 + L2 LINE L2 2138 3228 -85 203 324 18 36 chr1 98091231 98091342 -144573011 + GA-rich Low_complexity Low_complexity 5 113 0 503 278 28 0 chr1 98093098 98093242 -144571111 - MIR SINE MIR 0 262 115 198 0 0 0 chr1 98093250 98093272 -144571081 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2774 229 80 47 chr1 98097350 98098677 -144565676 + L1MDa LINE L1 21 1688 -4852 2021 153 32 3 chr1 98098913 98099481 -144564872 + L1M4 LINE L1 4980 5563 -621 606 217 10 10 chr1 98099542 98099717 -144564636 + L1MB8 LINE L1 5519 5698 -476 722 181 60 6 chr1 98099725 98099891 -144564462 + L1MB8 LINE L1 5995 6169 -9 241 254 17 17 chr1 98101428 98101487 -144562866 - L2 LINE L2 -19 3294 3236 27 0 0 0 chr1 98101596 98101623 -144562730 + AT_rich Low_complexity Low_complexity 1 27 0 296 203 49 63 chr1 98101630 98101773 -144562580 - L1ME4a LINE L1 -15 6106 5966 769 254 100 19 chr1 98101835 98102146 -144562207 - L1ME4a LINE L1 -301 5820 5485 433 258 33 33 chr1 98102280 98102400 -144561953 - L2 LINE L2 -6 3307 3188 2123 107 4 0 chr1 98102739 98103020 -144561333 + AluSc SINE Alu 1 282 -27 423 0 0 0 chr1 98103020 98103067 -144561286 + (CA)n Simple_repeat Simple_repeat 2 48 0 4431 251 56 20 chr1 98103220 98104747 -144559606 - L1ME4a LINE L1 -1492 4654 3073 229 218 82 64 chr1 98105226 98105336 -144559017 - L1ME3 LINE L1 -88 6074 5963 600 141 51 13 chr1 98105480 98105636 -144558717 + CT-rich Low_complexity Low_complexity 2 163 0 509 138 11 0 chr1 98105666 98105760 -144558593 + CT-rich Low_complexity Low_complexity 3 97 0 2344 67 3 55 chr1 98106000 98106328 -144558025 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr1 98107303 98107323 -144557030 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 495 250 131 6 chr1 98107791 98107951 -144556402 - MLT1J LTR MaLR -2 509 330 280 299 39 8 chr1 98108014 98108141 -144556212 + HAL1 LINE L1 2375 2505 -2 612 268 102 56 chr1 98108190 98108474 -144555879 + L2 LINE L2 3016 3312 -1 257 271 53 30 chr1 98108699 98108784 -144555569 - MER103 DNA DNA -2 164 73 2081 95 3 43 chr1 98108784 98109088 -144555265 - AluSx SINE Alu -20 292 1 257 271 53 30 chr1 98109088 98109135 -144555218 - MER103 DNA DNA -93 73 29 360 175 0 12 chr1 98110405 98110485 -144553868 - MER116 DNA Mariner -1 79 1 1774 252 81 16 chr1 98111351 98111910 -144552443 + MLT1G1 LTR MaLR 1 595 0 202 328 57 8 chr1 98111984 98112106 -144552247 - L3b LINE CR1 -342 1241 1114 267 31 0 0 chr1 98112539 98112571 -144551782 + (CA)n Simple_repeat Simple_repeat 2 33 0 909 271 94 37 chr1 98112660 98113498 -144550855 - L1ME3 LINE L1 -366 5804 4830 2202 101 7 0 chr1 98113498 98113795 -144550558 - AluSx SINE Alu -13 299 1 909 271 94 37 chr1 98113795 98114193 -144550160 - L1ME3 LINE L1 -1340 4830 4456 578 209 0 0 chr1 98114203 98114308 -144550045 - MER82 DNA MER2_type 0 653 549 229 277 0 0 chr1 98117356 98117403 -144546950 - MIR SINE MIR -12 250 204 218 208 21 0 chr1 98117459 98117507 -144546846 + GA-rich Low_complexity Low_complexity 1 49 0 572 178 0 34 chr1 98118315 98118433 -144545920 - AluJb SINE Alu 0 312 199 357 303 55 67 chr1 98118808 98119244 -144545109 + L1ME LINE L1 3879 4309 -1837 546 203 5 137 chr1 98119260 98119428 -144544925 - MIR SINE MIR -17 245 109 1919 195 76 11 chr1 98119428 98119863 -144544490 + MLT1C LTR MaLR 1 463 -4 546 203 5 137 chr1 98119863 98119906 -144544447 - MIR SINE MIR -153 109 62 930 279 92 37 chr1 98119906 98120049 -144544304 + L1ME LINE L1 4297 4431 -1739 3321 206 9 8 chr1 98120049 98120701 -144543652 + MER82 DNA MER2_type 1 653 0 930 279 92 37 chr1 98120701 98121109 -144543244 + L1ME LINE L1 4431 4815 -1355 2179 104 7 0 chr1 98121109 98121406 -144542947 + AluSx SINE Alu 1 299 -13 930 279 92 37 chr1 98121406 98122244 -144542109 + L1ME LINE L1 4815 5804 -366 357 24 0 0 chr1 98122333 98122375 -144541978 + (TG)n Simple_repeat Simple_repeat 2 43 0 202 328 57 8 chr1 98122808 98122930 -144541423 + L3b LINE CR1 1114 1241 -342 1753 254 81 16 chr1 98123004 98123563 -144540790 - MLT1G1 LTR MaLR 0 595 1 360 175 0 12 chr1 98124429 98124509 -144539844 + MER116 DNA Mariner 1 79 -1 2087 96 3 40 chr1 98125825 98126128 -144538225 + AluSx SINE Alu 1 292 -20 606 254 99 53 chr1 98126438 98126722 -144537631 - L2 LINE L2 -1 3312 3016 280 299 39 8 chr1 98126771 98126898 -144537455 - HAL1 LINE L1 -2 2505 2375 495 250 131 6 chr1 98126961 98127121 -144537232 + MLT1J LTR MaLR 330 509 -2 180 0 0 0 chr1 98127589 98127609 -144536744 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2352 67 3 55 chr1 98128572 98128901 -144535452 - AluSx SINE Alu 0 312 1 488 276 153 63 chr1 98128909 98129340 -144535013 - HAL1 LINE L1 -810 1697 1228 21 0 0 0 chr1 98129460 98129481 -144534872 + AT_rich Low_complexity Low_complexity 1 21 0 2353 115 36 8 chr1 98130132 98130497 -144533856 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr1 98130640 98130665 -144533688 + AT_rich Low_complexity Low_complexity 1 25 0 314 240 41 103 chr1 98130869 98131015 -144533338 - L2 LINE L2 -216 3056 2920 367 234 65 103 chr1 98132019 98132203 -144532150 - MER69A DNA AcHobo 0 177 1 22 35 0 0 chr1 98133828 98133857 -144530496 + AT_rich Low_complexity Low_complexity 1 29 0 253 329 0 24 chr1 98134064 98134149 -144530204 + MIR3 SINE MIR 5 87 -121 405 325 162 31 chr1 98134161 98134543 -144529810 - L2 LINE L2 -1 3312 2881 189 179 30 90 chr1 98134625 98134692 -144529661 + L2 LINE L2 3251 3313 0 2176 119 0 0 chr1 98134778 98135073 -144529280 + AluSx SINE Alu 3 297 -15 3349 150 42 24 chr1 98135924 98136590 -144527763 + L1MC3 LINE L1 6936 7613 -172 987 229 26 4 chr1 98136964 98137191 -144527162 - MIR SINE MIR 0 262 31 940 246 25 8 chr1 98137376 98137620 -144526733 - LTR16A LTR ERVL 0 450 203 304 193 18 0 chr1 98140335 98140392 -144523961 - Tigger5 DNA MER2_type -2265 58 1 1850 144 17 27 chr1 98142273 98142571 -144521782 - AluJb SINE Alu -17 295 1 233 29 29 0 chr1 98142710 98142744 -144521609 + (TG)n Simple_repeat Simple_repeat 1 35 0 302 350 83 0 chr1 98143097 98143217 -144521136 + MIR SINE MIR 69 198 -64 1785 160 0 0 chr1 98144262 98144544 -144519809 + AluSx SINE Alu 14 295 -17 280 264 232 24 chr1 98144656 98144781 -144519572 - L2 LINE L2 0 3272 3122 383 101 159 0 chr1 98144798 98144867 -144519486 + MADE1 DNA Mariner 1 80 0 2107 117 0 0 chr1 98145222 98145530 -144518823 - AluY SINE Alu 0 308 1 992 112 0 8 chr1 98145531 98145665 -144518688 - AluSg1 SINE Alu -176 133 1 819 203 176 0 chr1 98147180 98147367 -144516986 + MER58A DNA MER1_type 1 220 -4 279 224 35 17 chr1 98148544 98148602 -144515751 + MER5B DNA MER1_type 120 178 0 1664 174 39 13 chr1 98148780 98149091 -144515262 - MER7A DNA MER2_type 0 346 30 1429 184 51 60 chr1 98149093 98149528 -144514825 - MLT1C LTR MaLR -31 436 6 6476 52 1 1 chr1 98149839 98151119 -144513234 + L1PA8A LINE L1 4557 5836 -295 1779 145 41 62 chr1 98151221 98151608 -144512745 - MSTB LTR MaLR -47 379 1 1525 221 13 20 chr1 98151981 98152374 -144511979 + MER74A LTR ERVL 1 390 -168 7188 99 11 5 chr1 98152670 98153715 -144510638 - HSMAR1 DNA Mariner -236 1051 1 21 0 0 0 chr1 98153732 98153753 -144510600 + AT_rich Low_complexity Low_complexity 1 21 0 460 246 24 8 chr1 98155148 98155274 -144509079 + MER46C DNA MER2_type 208 335 -3 231 130 0 22 chr1 98155383 98155429 -144508924 + MLT1F1 LTR MaLR 6 50 -517 180 309 34 57 chr1 98157423 98157598 -144506755 - L3 LINE CR1 -73 1504 1334 1635 173 29 4 chr1 98157598 98157896 -144506457 - AluSx SINE Alu 0 305 1 2309 110 7 0 chr1 98158431 98158739 -144505614 + AluSg SINE Alu 1 310 0 244 341 61 23 chr1 98158891 98159023 -144505330 + MER5B DNA MER1_type 4 140 -38 186 273 164 0 chr1 98159960 98160070 -144504283 - L2 LINE L2 0 3272 3145 192 239 164 0 chr1 98160841 98160908 -144503445 - MIR SINE MIR -10 252 175 468 322 75 17 chr1 98161125 98161299 -144503054 - MIR SINE MIR -71 191 8 21 0 0 0 chr1 98161972 98161993 -144502360 + AT_rich Low_complexity Low_complexity 1 21 0 2345 139 43 0 chr1 98162710 98163084 -144501269 - MLT1B LTR MaLR 0 390 1 1022 144 23 0 chr1 98165113 98165287 -144499066 - MER5B DNA MER1_type 0 178 1 209 284 69 69 chr1 98165418 98165520 -144498833 - L3 LINE CR1 -2 1575 1474 21 0 0 0 chr1 98166435 98166456 -144497897 + AT_rich Low_complexity Low_complexity 1 21 0 846 169 51 7 chr1 98166837 98167212 -144497141 + GA-rich Low_complexity Low_complexity 1 391 0 26 50 0 0 chr1 98167470 98167510 -144496843 + AT_rich Low_complexity Low_complexity 1 40 0 2155 143 3 0 chr1 98168206 98168506 -144495847 + AluSg SINE Alu 1 301 -9 315 283 7 41 chr1 98169081 98169226 -144495127 + A-rich Low_complexity Low_complexity 2 141 0 1751 184 0 10 chr1 98170499 98170792 -144493561 - AluJo SINE Alu -22 290 1 189 74 0 0 chr1 98171021 98171048 -144493305 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 369 325 118 6 chr1 98171134 98171303 -144493050 + MIR3 SINE MIR 16 203 -5 2872 262 136 22 chr1 98171523 98172902 -144491451 + L2 LINE L2 1796 3313 0 401 202 56 0 chr1 98173246 98173335 -144491018 - MIR SINE MIR 0 262 169 313 214 12 0 chr1 98174109 98174193 -144490160 + L1ME LINE L1 5738 5822 -340 229 327 29 10 chr1 98174763 98174867 -144489486 - L2 LINE L2 -223 3049 2944 252 383 81 14 chr1 98174897 98175106 -144489247 + MIR SINE MIR 21 243 -19 253 204 0 41 chr1 98175134 98175183 -144489170 - MIR SINE MIR -141 67 21 559 296 214 17 chr1 98177542 98177893 -144486460 + L3 LINE CR1 449 868 -709 320 285 31 31 chr1 98177981 98178111 -144486242 + MIR SINE MIR 104 233 -29 305 294 118 10 chr1 98178246 98178348 -144486005 - L2 LINE L2 -10 3262 3150 212 326 11 34 chr1 98178428 98178517 -144485836 + L2 LINE L2 3186 3272 0 * 300 253 59 65 chr1 98178503 98178673 -144485680 + L3 LINE CR1 1188 1356 -221 465 135 11 0 chr1 98182832 98182921 -144481432 + L1MB2 LINE L1 6078 6167 -4 719 266 189 28 chr1 98183169 98183665 -144480688 - MLT1K LTR MaLR -12 576 1 4708 186 71 12 chr1 98183693 98184675 -144479678 - MER45B DNA AcHobo 0 1040 1 263 70 0 23 chr1 98184818 98184861 -144479492 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 726 259 161 15 chr1 98184923 98185309 -144479044 - L1MC/D LINE L1 -299 5822 5380 408 239 154 64 chr1 98185450 98185684 -144478669 - MIR SINE MIR 0 262 8 423 0 0 0 chr1 98188481 98188528 -144475825 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 348 68 51 chr1 98189640 98189876 -144474477 - MIR SINE MIR 0 262 23 2130 159 74 17 chr1 98190708 98191111 -144473242 - MSTB LTR MaLR 0 426 1 365 354 0 9 chr1 98191262 98191375 -144472978 + L2 LINE L2 3160 3271 -1 2257 206 75 20 chr1 98191906 98192449 -144471904 + MLT1E2 LTR MaLR 52 624 -2 21 0 0 0 chr1 98192481 98192502 -144471851 + AT_rich Low_complexity Low_complexity 1 21 0 186 382 67 0 chr1 98192673 98192762 -144471591 - L2 LINE L2 -2 3270 3176 831 339 61 40 chr1 98192884 98193581 -144470772 + L2 LINE L2 2496 3211 -61 2192 102 38 0 chr1 98194503 98194796 -144469557 + AluSq SINE Alu 1 304 -9 192 333 79 34 chr1 98194860 98195037 -144469316 - L2 LINE L2 -1897 1417 1233 192 125 0 0 chr1 98196323 98196355 -144467998 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 236 242 0 0 chr1 98196772 98196838 -144467515 - MER117 DNA MER1_type -103 94 29 200 419 122 7 chr1 98199629 98199777 -144464576 + L2 LINE L2 3076 3240 -32 295 333 21 10 chr1 98199784 98199880 -144464473 - L2 LINE L2 -35 3237 3141 363 246 0 0 chr1 98200086 98200155 -144464198 - L2 LINE L2 -3 3269 3201 1284 284 58 5 chr1 98200262 98200692 -144463661 - LTR33 LTR ERVL 0 521 69 406 318 85 23 chr1 98200819 98200995 -144463358 + MIR3 SINE MIR 15 201 -7 251 114 0 0 chr1 98202870 98202914 -144461439 - L1PA5 LINE L1 -1 6153 6110 389 324 80 80 chr1 98203329 98203579 -144460774 + MIR SINE MIR 2 251 -11 569 327 31 13 chr1 98204658 98204884 -144459469 - MIR SINE MIR -14 248 19 23 0 0 0 chr1 98206228 98206251 -144458102 + AT_rich Low_complexity Low_complexity 1 23 0 861 327 128 36 chr1 98207257 98207580 -144456773 + L2 LINE L2 1293 1585 -1729 246 32 0 0 chr1 98207580 98207611 -144456742 + (TC)n Simple_repeat Simple_repeat 1 31 0 861 327 128 36 chr1 98207611 98208722 -144455631 + L2 LINE L2 1585 2859 -455 241 195 0 0 chr1 98209580 98209621 -144454732 - 5S rRNA rRNA -79 42 2 242 301 184 20 chr1 98209659 98209855 -144454498 - MIR SINE MIR -1 261 34 406 201 6 90 chr1 98211548 98211630 -144452723 + L1ME3 LINE L1 6003 6057 -113 1990 133 29 50 chr1 98211630 98212013 -144452340 - THE1C LTR MaLR 0 375 1 406 201 6 90 chr1 98212013 98212119 -144452234 + L1ME3 LINE L1 6057 6170 0 479 322 38 27 chr1 98213154 98213337 -144451016 - MIR3 SINE MIR -7 201 17 2163 54 32 14 chr1 98213866 98214196 -144450157 - AluY SINE Alu 0 335 1 419 286 117 31 chr1 98215758 98215954 -144448399 - MIR SINE MIR -2 260 48 2112 92 12 67 chr1 98216671 98216998 -144447355 + AluSx SINE Alu 2 310 -2 514 296 79 30 chr1 98217134 98217337 -144447016 + MIR SINE MIR 20 232 -30 1557 164 39 52 chr1 98217844 98218149 -144446204 + AluJo SINE Alu 1 301 -11 217 306 62 76 chr1 98218859 98219003 -144445350 + L2 LINE L2 3116 3257 -15 22 0 0 0 chr1 98219948 98219970 -144444383 + AT_rich Low_complexity Low_complexity 1 22 0 465 348 89 56 chr1 98220544 98220846 -144443507 + L2 LINE L2 2933 3244 -28 455 342 111 44 chr1 98220944 98221690 -144442663 + L2 LINE L2 2136 2931 -383 1583 224 26 0 chr1 98221811 98222226 -144442127 + Charlie4a DNA MER1_type 18 443 -65 2452 70 0 3 chr1 98222544 98222846 -144441507 - AluY SINE Alu -8 303 3 291 238 24 24 chr1 98223087 98223213 -144441140 + (TA)n Simple_repeat Simple_repeat 2 127 0 410 303 35 77 chr1 98223941 98224205 -144440148 - MIR SINE MIR 0 262 3 265 271 0 43 chr1 98224633 98224773 -144439580 + LTR16A LTR ERVL 136 269 -181 935 308 75 9 chr1 98224829 98225254 -144439099 + HERV16 LTR ERVL 20 472 -4524 2754 290 79 6 chr1 98225335 98227280 -144437073 + HERV16 LTR ERVL 580 2802 -2194 978 338 10 49 chr1 98227711 98228154 -144436199 + HERV16 LTR ERVL 2812 3271 -2383 2386 99 0 0 chr1 98228154 98228458 -144435895 + AluSg SINE Alu 3 306 -4 1989 99 18 11 chr1 98228461 98228733 -144435620 + AluSc SINE Alu 29 302 -7 978 338 10 49 chr1 98228733 98228901 -144435452 + HERV16 LTR ERVL 3273 3403 -2251 1213 261 81 24 chr1 98229062 98229472 -144434881 + LTR16A LTR ERVL 18 450 0 1023 195 0 0 chr1 98229526 98229690 -144434663 - FAM SINE Alu -10 165 2 526 359 46 78 chr1 98230148 98230696 -144433657 - L2 LINE L2 0 3272 2728 13481 162 38 45 chr1 98230790 98233039 -144431314 + L1MA2 LINE L1 9 2272 -5452 2099 141 0 3 chr1 98233039 98233345 -144431008 + AluSx SINE Alu 1 305 -7 13481 162 38 45 chr1 98233345 98234392 -144429961 + L1MA2 LINE L1 2272 3325 -4399 19212 111 0 0 chr1 98234392 98238223 -144426130 + L1PA8 LINE L1 2287 6164 -8 13481 162 38 45 chr1 98238223 98238742 -144425611 + L1MA2 LINE L1 3325 3846 -3878 2435 75 3 0 chr1 98238742 98239050 -144425303 - AluY SINE Alu -2 309 1 13481 162 38 45 chr1 98239050 98239359 -144424994 + L1MA2 LINE L1 3846 4156 -3568 1656 195 10 13 chr1 98239359 98239666 -144424687 + AluJb SINE Alu 6 311 -1 13481 162 38 45 chr1 98239666 98240049 -144424304 + L1MA2 LINE L1 4156 4540 -3184 1689 188 45 0 chr1 98240049 98240337 -144424016 + AluJb SINE Alu 1 301 -11 13481 162 38 45 chr1 98240337 98241925 -144422428 + L1MA2 LINE L1 4540 6463 -1261 2246 111 3 13 chr1 98241925 98242240 -144422113 + AluSx SINE Alu 1 312 0 13481 162 38 45 chr1 98242240 98243078 -144421275 + L1MA2 LINE L1 6463 7305 -419 1724 109 25 0 chr1 98243082 98243358 -144420995 + L1MA2 LINE L1 7441 7723 0 663 288 21 41 chr1 98243949 98244192 -144420161 - MIR SINE MIR 0 262 25 338 281 224 26 chr1 98244501 98244693 -144419660 - MIR SINE MIR -18 244 15 2790 92 18 8 chr1 98245274 98245667 -144418686 + MLT2A2 LTR ERVL 2 398 -55 275 0 0 28 chr1 98245667 98245703 -144418650 + (TA)n Simple_repeat Simple_repeat 2 36 0 363 97 0 9 chr1 98245799 98245860 -144418493 + MLT2A2 LTR ERVL 401 453 0 25627 68 15 6 chr1 98245860 98247046 -144417307 + HERVL-A2-A2 LTR ERVL 1 1174 -4480 2323 85 0 0 chr1 98247046 98247341 -144417012 + AluY SINE Alu 1 295 -16 25627 68 15 6 chr1 98247341 98251756 -144412597 + HERVL-A2-A2 LTR ERVL 1174 5654 0 2720 92 35 8 chr1 98251756 98252158 -144412195 + MLT2A2 LTR ERVL 1 413 -40 530 274 6 0 chr1 98252163 98252342 -144412011 + (TA)n Simple_repeat Simple_repeat 1 180 0 232 113 57 19 chr1 98252342 98252363 -144411990 + MLT2A2 LTR ERVL 390 409 -35 414 0 0 0 chr1 98252363 98252409 -144411944 + (GA)n Simple_repeat Simple_repeat 2 47 0 232 113 57 19 chr1 98252409 98252440 -144411913 + MLT2A2 LTR ERVL 409 444 0 266 211 0 19 chr1 98252452 98252504 -144411849 + L2 LINE L2 3204 3254 -18 2095 100 6 44 chr1 98253345 98253664 -144410689 + AluSx SINE Alu 1 307 -5 1086 185 51 5 chr1 98253694 98253910 -144410443 + AluJb SINE Alu 86 311 -1 296 360 0 0 chr1 98255258 98255347 -144409006 - MIR SINE MIR -71 137 49 1868 150 3 36 chr1 98255715 98256021 -144408332 - AluSx SINE Alu -16 296 1 2110 230 52 18 chr1 98256196 98256795 -144407558 + L1MC4a LINE L1 7190 7808 0 470 267 119 53 chr1 98256892 98257614 -144406739 + L1ME4a LINE L1 5334 6103 -18 180 239 87 0 chr1 98257926 98257972 -144406381 + L2 LINE L2 3262 3311 -2 1917 167 0 7 chr1 98257990 98258296 -144406057 + AluJb SINE Alu 1 304 -8 483 351 32 7 chr1 98259033 98259187 -144405166 + L2 LINE L2 3115 3272 0 185 349 160 0 chr1 98259446 98259552 -144404801 - L2 LINE L2 -2 3270 3148 1822 162 0 0 chr1 98259647 98259962 -144404391 - AluJb SINE Alu 0 332 18 2226 117 0 0 chr1 98259962 98260270 -144404083 + AluSq SINE Alu 1 308 -5 638 322 23 8 chr1 98260600 98260998 -144403355 - L1M4 LINE L1 -1114 5032 4629 1923 162 13 3 chr1 98261115 98261424 -144402929 - AluJo SINE Alu 0 312 1 543 253 64 124 chr1 98261617 98262150 -144402203 + MLT1J LTR MaLR 9 509 -2 621 119 0 0 chr1 98262356 98262440 -144401913 + AluS SINE Alu 1 84 -229 1854 129 47 4 chr1 98262558 98262837 -144401516 + AluSg SINE Alu 1 291 -19 274 336 147 26 chr1 98262928 98263044 -144401309 - L2 LINE L2 -7 3265 3136 26 30 0 0 chr1 98263312 98263345 -144401008 + AT_rich Low_complexity Low_complexity 1 33 0 753 162 0 0 chr1 98263345 98263462 -144400891 + FRAM SINE Alu 43 159 -17 268 315 69 31 chr1 98263510 98263640 -144400713 + MIR SINE MIR 57 191 -71 296 206 301 0 chr1 98263662 98263808 -144400545 - L2 LINE L2 -12 3301 3112 386 274 126 17 chr1 98263939 98264114 -144400239 - L2 LINE L2 -227 3086 2893 447 332 136 0 chr1 98264329 98264549 -144399804 - MIR SINE MIR -10 252 3 366 232 101 10 chr1 98264684 98264783 -144399570 - L2 LINE L2 0 3313 3206 24 32 0 0 chr1 98264848 98264879 -144399474 + AT_rich Low_complexity Low_complexity 1 31 0 878 221 20 0 chr1 98265471 98265666 -144398687 + MER3 DNA MER1_type 1 199 -10 2390 88 0 0 chr1 98265712 98266007 -144398346 - AluSg SINE Alu -15 295 1 779 169 38 0 chr1 98266072 98266255 -144398098 - L1MA7 LINE L1 0 6291 6102 2646 122 9 7 chr1 98266529 98266964 -144397389 + L1MB3 LINE L1 5747 6182 -1 927 131 56 12 chr1 98267137 98267297 -144397056 - THE1C LTR MaLR -208 167 1 9343 136 17 34 chr1 98267297 98268902 -144395451 - THE1C-int LTR MaLR 0 1580 3 1505 166 48 63 chr1 98268904 98269283 -144395070 - THE1C LTR MaLR 0 375 3 3916 190 45 16 chr1 98269286 98270631 -144393722 + L1PA14 LINE L1 2551 3923 -3661 13011 178 24 23 chr1 98270633 98271984 -144392369 + L1PA14 LINE L1 4050 5398 -2201 1822 149 35 0 chr1 98271984 98272266 -144392087 + AluSx SINE Alu 1 292 -20 13011 178 24 23 chr1 98272266 98273670 -144390683 + L1PA14 LINE L1 5398 6796 -803 2024 152 0 0 chr1 98273670 98273966 -144390387 + AluSx SINE Alu 1 296 -16 13011 178 24 23 chr1 98273966 98274766 -144389587 + L1PA14 LINE L1 6796 7594 -5 440 191 43 0 chr1 98274787 98274881 -144389472 + MLT1J1 LTR MaLR 63 160 -286 * 1045 163 5 20 chr1 98274870 98275066 -144389287 + MER20 DNA MER1_type 27 219 0 350 221 66 16 chr1 98275161 98275335 -144389018 + MLT1J LTR MaLR 252 504 -7 442 289 85 47 chr1 98275430 98275847 -144388506 + MLT1K LTR MaLR 23 530 -58 1806 94 0 0 chr1 98275847 98276080 -144388273 - AluSg SINE Alu -15 295 63 442 289 85 47 chr1 98276080 98276142 -144388211 + MLT1K LTR MaLR 530 588 0 2055 129 0 0 chr1 98277002 98277288 -144387065 - AluSg SINE Alu -24 286 1 392 208 0 0 chr1 98277351 98277423 -144386930 + MIR SINE MIR 78 149 -113 276 30 0 0 chr1 98277562 98277595 -144386758 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 219 291 63 38 chr1 98277746 98277825 -144386528 + L2 LINE L2 2890 2970 -343 203 343 64 93 chr1 98277908 98278080 -144386273 + L2 LINE L2 3008 3174 -98 545 376 40 43 chr1 98279006 98279177 -144385176 - L2 LINE L2 -455 2859 2689 1921 136 46 10 chr1 98279177 98279479 -144384874 + AluSq SINE Alu 1 313 0 545 376 40 43 chr1 98279479 98279679 -144384674 - L2 LINE L2 -625 2689 2489 228 299 31 10 chr1 98279688 98279785 -144384568 + MER81 DNA DNA 6 104 -10 836 306 62 77 chr1 98279858 98280594 -144383759 - L2 LINE L2 -885 2429 1705 3061 209 40 10 chr1 98280927 98281330 -144383023 - L1 LINE L1 -3048 3800 3411 1629 201 0 29 chr1 98281330 98281638 -144382715 + AluJo SINE Alu 1 299 -13 3061 209 40 10 chr1 98281638 98282033 -144382320 - L1 LINE L1 -3437 3411 2978 462 88 22 33 chr1 98282043 98282134 -144382219 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 1664 162 0 8 chr1 98282144 98282409 -144381944 - AluJb SINE Alu -1 311 49 5622 207 52 11 chr1 98282409 98283966 -144380387 - L1 LINE L1 -3859 2989 1357 861 270 123 3 chr1 98284503 98284802 -144379551 - MER69 DNA AcHobo -2004 522 188 1620 193 112 57 chr1 98284802 98284832 -144379521 - MLT2B1 LTR ERVL 0 520 493 378 0 0 0 chr1 98284832 98284874 -144379479 + (TG)n Simple_repeat Simple_repeat 2 43 0 1620 193 112 57 chr1 98284874 98285277 -144379076 - MLT2B1 LTR ERVL -27 493 54 2101 129 48 28 chr1 98285277 98285634 -144378719 + THE1B LTR MaLR 1 364 0 1620 193 112 57 chr1 98285634 98285692 -144378661 - MLT2B1 LTR ERVL -466 54 1 1674 212 44 38 chr1 98285692 98286111 -144378242 - ERVL-B1 LTR ERVL -7 5757 5333 2404 79 3 0 chr1 98286111 98286414 -144377939 - AluY SINE Alu -7 304 1 1674 212 44 38 chr1 98286414 98286499 -144377854 - ERVL-B1 LTR ERVL -431 5333 5250 1362 174 21 4 chr1 98286502 98286738 -144377615 - ERVL-B1 LTR ERVL -1472 4292 4053 12323 173 11 13 chr1 98286749 98288993 -144375360 - ERVL-B1 LTR ERVL -519 5245 3006 1103 140 24 29 chr1 98288994 98289201 -144375152 - MSTA LTR MaLR -222 206 1 2455 233 41 4 chr1 98289206 98289769 -144374584 - ERVL-B1 LTR ERVL -5179 585 2 284 193 0 0 chr1 98289770 98289827 -144374526 - MLT2B1 LTR ERVL 0 520 464 494 43 0 29 chr1 98289885 98289955 -144374398 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 965 242 82 34 chr1 98289955 98290334 -144374019 - MLT2B1 LTR ERVL -20 534 92 747 176 0 42 chr1 98290336 98290478 -144373875 + AluJo SINE Alu 1 136 -176 504 179 11 0 chr1 98290492 98290587 -144373766 - MLT2B1 LTR ERVL -422 98 3 334 214 279 29 chr1 98290589 98290729 -144373624 - MER69 DNA AcHobo -1034 192 18 1438 222 30 7 chr1 98291637 98291934 -144372419 + AluJb SINE Alu 1 304 -8 1868 135 7 7 chr1 98292866 98293147 -144371206 - AluSx SINE Alu -31 281 1 837 30 0 0 chr1 98293656 98293756 -144370597 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 3900 136 14 1 chr1 98294151 98294805 -144369548 + L1MC1 LINE L1 5649 6310 -23 936 267 108 3 chr1 98294840 98295128 -144369225 - L3b LINE CR1 -11 1572 1255 270 0 0 0 chr1 98295412 98295442 -144368911 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 202 234 0 0 chr1 98296037 98296084 -144368269 + T-rich Low_complexity Low_complexity 1 47 0 588 209 54 7 chr1 98296554 98296715 -144367638 + MLT1H LTR MaLR 4 210 -339 221 281 0 0 chr1 98298276 98298333 -144366020 - MIR SINE MIR -66 142 91 2726 10 0 3 chr1 98298438 98298742 -144365611 + AluYa5 SINE Alu 1 303 -8 582 313 143 13 chr1 98298829 98299059 -144365294 - MIR SINE MIR -1 261 2 205 360 95 46 chr1 98299461 98299828 -144364525 - L2 LINE L2 -632 2682 2298 440 200 50 10 chr1 98299830 98299930 -144364423 - L2 LINE L2 -10 3303 3200 616 326 67 42 chr1 98300455 98300768 -144363585 + MER102b DNA MER1_type 20 340 -1 199 328 0 0 chr1 98300944 98301008 -144363345 + MIR SINE MIR 88 151 -111 797 163 0 0 chr1 98301010 98301133 -144363220 + L1M2 LINE L1 5620 5742 -558 3398 122 37 17 chr1 98301133 98301731 -144362622 + L1MA8 LINE L1 5676 6285 -6 210 269 15 15 chr1 98301787 98301854 -144362499 + MIR SINE MIR 183 249 -13 2047 111 4 7 chr1 98301932 98302242 -144362111 - AluSg1 SINE Alu 0 309 10 206 286 143 36 chr1 98302279 98302363 -144361990 - L2 LINE L2 -18 3295 3203 2124 131 3 3 chr1 98302504 98302816 -144361537 + AluSx SINE Alu 1 312 0 631 315 27 35 chr1 98302936 98303193 -144361160 - MIR SINE MIR -2 260 6 731 159 0 30 chr1 98303542 98303674 -144360679 + FLAM_A SINE Alu 1 128 -5 239 279 103 52 chr1 98303866 98304002 -144360351 - MIR SINE MIR -2 260 118 267 188 0 0 chr1 98305199 98305247 -144359106 - L2 LINE L2 0 3313 3266 2624 41 0 19 chr1 98305682 98305999 -144358354 + AluY SINE Alu 1 311 0 29 28 0 0 chr1 98306202 98306238 -144358115 + AT_rich Low_complexity Low_complexity 1 36 0 957 158 11 23 chr1 98306238 98306415 -144357938 - AluJo SINE Alu -18 294 120 959 234 52 12 chr1 98306487 98306739 -144357614 - MIR SINE MIR 0 262 1 842 191 89 13 chr1 98307679 98307915 -144356438 - MER69 DNA AcHobo -7 2519 2266 569 191 48 0 chr1 98307911 98308037 -144356316 - MER69 DNA AcHobo -449 2077 1946 * 338 289 0 0 chr1 98308051 98308127 -144356226 - MER69 DNA AcHobo -1149 77 2 522 210 29 71 chr1 98308609 98308847 -144355506 - L1MC5 LINE L1 -104 7857 7630 437 248 138 7 chr1 98309070 98309215 -144355138 + MIR SINE MIR 95 258 -4 271 315 65 0 chr1 98309339 98309447 -144354906 - MIR SINE MIR -76 132 18 310 252 23 69 chr1 98310122 98310253 -144354100 - L1 LINE L1 -1661 4485 4361 21 0 0 0 chr1 98310710 98310731 -144353622 + AT_rich Low_complexity Low_complexity 1 21 0 288 379 50 6 chr1 98310774 98310935 -144353418 + L3b LINE CR1 1283 1450 -133 381 322 95 81 chr1 98311571 98312065 -144352288 - L2 LINE L2 -473 2841 2341 742 164 0 8 chr1 98312425 98312547 -144351806 + FLAM_C SINE Alu 1 121 -22 317 283 42 17 chr1 98312554 98312674 -144351679 + MER5A DNA MER1_type 61 183 -6 2253 48 42 7 chr1 98312988 98313277 -144351076 - AluY SINE Alu -12 299 1 437 103 39 26 chr1 98313467 98313545 -144350808 + MER116 DNA Mariner 1 79 -1 195 304 113 0 chr1 98314017 98314132 -144350221 + MIR SINE MIR 81 208 -54 262 316 0 51 chr1 98314170 98314268 -144350085 - L2 LINE L2 -2 3270 3178 1821 67 109 28 chr1 98315190 98315473 -144348880 + AluYa8 SINE Alu 3 308 -2 362 340 51 13 chr1 98315606 98315762 -144348591 - L2 LINE L2 0 3272 3111 228 315 87 34 chr1 98315858 98316007 -144348346 + MLT1K LTR MaLR 203 359 -229 311 230 81 75 chr1 98316028 98316202 -144348151 + MLT1K LTR MaLR 332 506 -82 * 470 217 66 0 chr1 98316199 98316305 -144348048 - MLT1J LTR MaLR -96 415 303 1658 209 11 19 chr1 98316332 98316700 -144347653 - MLT1A1 LTR MaLR 0 365 1 481 339 93 29 chr1 98317966 98318344 -144346009 - L2 LINE L2 -739 2575 2174 769 272 92 2 chr1 98319343 98319551 -144344802 + MIR SINE MIR 7 230 -32 1774 152 52 7 chr1 98320276 98320585 -144343768 - MER2 DNA MER2_type -6 339 17 391 149 23 11 chr1 98323210 98323297 -144341056 - AluSx SINE Alu -2 300 213 1710 101 9 0 chr1 98323602 98323829 -144340524 - AluSx SINE Alu -83 229 1 201 74 0 0 chr1 98324937 98324964 -144339389 + (A)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr1 98326048 98326072 -144338281 + GC_rich Low_complexity Low_complexity 1 24 0 234 91 0 0 chr1 98326287 98326320 -144338033 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 955 120 0 0 chr1 98328616 98328749 -144335604 - AluSq/x SINE Alu -179 133 1 1055 225 30 105 chr1 98328928 98329290 -144335063 - MLT1G LTR MaLR -59 531 152 529 260 74 48 chr1 98329406 98329765 -144334588 + MLT1J2 LTR MaLR 8 377 -134 497 215 86 0 chr1 98330311 98330404 -144333949 + Charlie1 DNA MER1_type 1 101 -2660 1000 90 0 90 chr1 98330408 98330574 -144333779 + AluSq/x SINE Alu 1 151 -162 1110 60 0 0 chr1 98330725 98330858 -144333495 + AluSg/x SINE Alu 166 298 -12 616 252 14 0 chr1 98330859 98331002 -144333351 + Charlie1 DNA MER1_type 94 238 -2523 504 194 37 9 chr1 98330993 98331101 -144333252 + Charlie1 DNA MER1_type 2628 2738 -23 * 1612 186 47 14 chr1 98331101 98331445 -144332908 - MLT1A1 LTR MaLR 0 365 11 372 350 0 32 chr1 98332791 98332948 -144331405 + L2 LINE L2 2553 2704 -610 602 222 0 22 chr1 98333002 98333137 -144331216 - FLAM_C SINE Alu 0 133 2 663 221 214 22 chr1 98333214 98333485 -144330868 + MLT1I LTR MaLR 79 401 -8 252 393 9 0 chr1 98333586 98333693 -144330660 + L2 LINE L2 2935 3042 -230 201 389 0 0 chr1 98333745 98333817 -144330536 + L2 LINE L2 3183 3254 -59 180 0 0 0 chr1 98334415 98334435 -144329918 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr1 98334789 98334817 -144329536 + AT_rich Low_complexity Low_complexity 1 28 0 896 156 14 0 chr1 98335308 98335449 -144328904 + FRAM SINE Alu 11 153 -23 339 316 83 47 chr1 98335560 98335753 -144328600 + MIR3 SINE MIR 2 201 -7 1995 98 4 0 chr1 98335925 98336191 -144328162 + AluSc SINE Alu 2 268 -41 510 304 124 10 chr1 98336550 98336751 -144327602 - MIR SINE MIR -4 258 35 2353 87 0 3 chr1 98336761 98337059 -144327294 - AluSg SINE Alu -12 298 2 187 216 98 0 chr1 98337448 98337499 -144326854 + L2 LINE L2 3255 3310 -3 310 283 57 9 chr1 98337843 98337949 -144326404 - L1ME4a LINE L1 -1 6120 6010 2160 128 0 0 chr1 98338204 98338494 -144325859 + AluSx SINE Alu 1 290 -22 1774 189 0 3 chr1 98339727 98340040 -144324313 - AluJb SINE Alu 0 312 1 1507 116 122 63 chr1 98340397 98340716 -144323637 + MER44D DNA MER2_type 2 609 0 1076 229 79 82 chr1 98340816 98341411 -144322942 - L1ME4a LINE L1 -310 5860 5268 630 158 18 26 chr1 98342109 98342223 -144322130 - MER6B DNA MER2_type 0 210 98 960 202 6 0 chr1 98342233 98342406 -144321947 + FRAM SINE Alu 1 166 -10 566 206 10 0 chr1 98342407 98342509 -144321844 - MER6B DNA MER2_type -173 103 1 230 327 9 0 chr1 98342513 98342620 -144321733 - L1ME4a LINE L1 -1034 5112 5005 4846 150 46 2 chr1 98342639 98343506 -144320847 - L1MC1 LINE L1 0 6333 5429 1997 53 40 0 chr1 98343568 98343815 -144320538 + AluY SINE Alu 38 294 -17 243 132 88 29 chr1 98343929 98343997 -144320356 + (TTAA)n Simple_repeat Simple_repeat 3 74 0 221 288 52 52 chr1 98344697 98344850 -144319503 + L2 LINE L2 1968 2120 -1194 23 86 0 0 chr1 98345723 98345781 -144318572 + AT_rich Low_complexity Low_complexity 1 58 0 993 198 0 42 chr1 98346753 98346945 -144317408 + MER39B LTR ERV1 1 184 -469 225 265 99 46 chr1 98347591 98347742 -144316611 - HAL1b LINE L1 -432 916 758 208 191 24 0 chr1 98347742 98347784 -144316569 + CT-rich Low_complexity Low_complexity 1 43 0 396 279 97 23 chr1 98347816 98348000 -144316353 - L1MEd LINE L1 -1258 1232 947 2465 95 14 3 chr1 98348095 98348443 -144315910 - L1PA11 LINE L1 -8 6166 5815 1716 113 0 8 chr1 98348444 98348684 -144315669 - AluSg/x SINE Alu 0 310 73 1897 85 27 0 chr1 98348795 98349055 -144315298 - L1PA11 LINE L1 -344 5830 5564 2327 156 44 38 chr1 98349055 98349528 -144314825 + MER39B LTR ERV1 168 643 -10 1402 94 0 6 chr1 98349875 98350055 -144314298 + AluSq SINE Alu 1 179 -134 2074 130 3 3 chr1 98350663 98350971 -144313382 - AluSx SINE Alu -2 310 3 361 269 37 19 chr1 98352165 98352273 -144312080 - MIR SINE MIR -81 127 18 365 254 132 18 chr1 98352472 98352586 -144311767 - MIR3 SINE MIR -45 163 37 618 234 12 29 chr1 98352679 98352703 -144311650 - L1MA10 LINE L1 0 6334 6311 2095 240 37 37 chr1 98352703 98353345 -144311008 - L1ME1 LINE L1 -11 6224 5583 877 207 12 0 chr1 98353346 98353515 -144310838 + AluJb SINE Alu 134 304 -8 4636 202 52 53 chr1 98353515 98354127 -144310226 - L1ME1 LINE L1 -642 5593 4982 2082 82 7 24 chr1 98354127 98354418 -144309935 + AluY SINE Alu 1 286 -25 4636 202 52 53 chr1 98354418 98355459 -144308894 - L1ME1 LINE L1 -1253 4982 3945 535 185 159 5 chr1 98355448 98355637 -144308716 - L1ME1 LINE L1 -3143 3072 2855 * 439 257 41 41 chr1 98355635 98355806 -144308547 - L1ME1 LINE L1 -6199 197 27 * 252 234 39 52 chr1 98356265 98356342 -144308011 - L1ME LINE L1 -480 5641 5566 231 289 82 7 chr1 98356383 98356518 -144307835 - L1ME LINE L1 -886 5473 5329 872 133 0 15 chr1 98357341 98357476 -144306877 - AluSq/x SINE Alu -179 133 1 345 288 0 138 chr1 98357692 98357774 -144306579 - L2 LINE L2 -1 3271 3220 2035 127 10 3 chr1 98357774 98358066 -144306287 - AluSx SINE Alu -18 294 1 345 288 0 138 chr1 98358066 98358143 -144306210 - L2 LINE L2 -52 3220 3134 281 296 163 32 chr1 98358633 98358910 -144305443 - L2 LINE L2 -814 2500 2188 5378 90 17 12 chr1 98359264 98360034 -144304319 + L1PA13 LINE L1 5390 6163 0 200 216 0 0 chr1 98360622 98360659 -144303694 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 223 273 30 30 chr1 98360957 98361023 -144303330 + L2 LINE L2 3242 3307 -6 36058 65 5 12 chr1 98361491 98367169 -144297184 - L1PA6 LINE L1 -1 6153 518 184 242 121 71 chr1 98367399 98367498 -144296855 - L3b LINE CR1 -80 1503 1400 224 232 189 0 chr1 98367731 98367826 -144296527 - L3b LINE CR1 -178 1405 1293 23 33 0 0 chr1 98368603 98368633 -144295720 + AT_rich Low_complexity Low_complexity 1 30 0 273 320 55 23 chr1 98368638 98368735 -144295618 - MIR SINE MIR -128 134 31 1762 137 50 4 chr1 98368735 98369034 -144295319 - AluJb SINE Alu 0 312 1 273 320 55 23 chr1 98369034 98369064 -144295289 - MIR SINE MIR -231 31 3 252 217 83 0 chr1 98369186 98369246 -144295107 - MER20B DNA MER1_type -712 71 7 4937 83 12 22 chr1 98369345 98370078 -144294275 - L1PB1 LINE L1 0 6151 5426 1493 167 7 42 chr1 98371241 98371529 -144292824 + AluJb SINE Alu 35 312 0 245 253 33 66 chr1 98371539 98371630 -144292723 - L2 LINE L2 -48 3224 3137 2162 108 3 0 chr1 98371830 98372127 -144292226 - AluSx SINE Alu -14 298 1 1747 142 8 4 chr1 98372135 98372403 -144291950 - AluSx SINE Alu -9 303 35 284 337 12 0 chr1 98372869 98372952 -144291401 - MIR SINE MIR -94 114 31 2239 96 0 7 chr1 98373290 98373583 -144290770 - AluSg SINE Alu -16 294 4 1060 136 12 0 chr1 98373601 98373763 -144290590 - AluSg/x SINE Alu 0 312 149 2010 183 78 78 chr1 98373771 98374618 -144289735 - L1MC/D LINE L1 -536 6217 5383 * 2422 248 81 9 chr1 98374612 98375426 -144288927 - L1MC/D LINE L1 -1687 4853 3981 291 212 35 0 chr1 98375429 98375514 -144288839 - L1MC/D LINE L1 -2677 3863 3776 1264 233 90 31 chr1 98375521 98376055 -144288298 - L1MDa LINE L1 -3359 3181 2558 850 154 0 0 chr1 98376055 98376185 -144288168 - FLAM_C SINE Alu -3 130 1 1264 233 90 31 chr1 98376185 98376544 -144287809 - L1MDa LINE L1 -3982 2558 2222 990 266 110 29 chr1 98376573 98376990 -144287363 - L1MDa LINE L1 -6087 453 3 253 128 43 0 chr1 98377246 98377293 -144287060 - L1MC2 LINE L1 -11 6333 6285 1601 136 4 0 chr1 98377297 98377547 -144286806 + L1MC3 LINE L1 6328 6578 -1207 2368 77 7 0 chr1 98377609 98377908 -144286445 - AluSp SINE Alu -12 301 1 267 240 0 0 chr1 98377997 98378047 -144286306 + L2 LINE L2 2580 2629 -685 459 248 38 138 chr1 98378100 98378390 -144285963 - MLT1H LTR MaLR -114 435 175 231 222 0 0 chr1 98378447 98378492 -144285861 - MLT1H LTR MaLR -481 61 17 504 190 16 91 chr1 98378553 98378634 -144285719 + L2 LINE L2 2704 2775 -539 2058 58 4 4 chr1 98378634 98378892 -144285461 + AluY SINE Alu 37 294 -17 504 190 16 91 chr1 98378892 98378931 -144285422 + L2 LINE L2 2775 2815 -499 356 262 10 19 chr1 98378931 98379034 -144285319 - MLT1J LTR MaLR -54 457 356 518 255 73 18 chr1 98379035 98379231 -144285122 - MLT1L LTR MaLR -88 527 239 192 204 91 0 chr1 98379537 98379581 -144284772 - MIR SINE MIR -98 164 117 263 344 117 19 chr1 98380207 98380361 -144283992 + MIR3 SINE MIR 32 200 -8 23 0 0 0 chr1 98381335 98381358 -144282995 + AT_rich Low_complexity Low_complexity 1 23 0 1339 179 69 0 chr1 98381497 98381759 -144282594 + L1MA6 LINE L1 5760 6039 -261 4267 211 44 56 chr1 98381804 98382418 -144281935 - L1M2 LINE L1 -536 7174 6554 1052 194 48 9 chr1 98382418 98382602 -144281751 - MER46A DNA MER2_type -2495 236 40 1716 176 7 7 chr1 98382602 98382892 -144281461 + AluJo SINE Alu 12 301 -11 1052 194 48 9 chr1 98382892 98382934 -144281419 - MER46A DNA MER2_type -2691 40 1 4267 211 44 56 chr1 98382934 98383869 -144280484 - L1M2 LINE L1 -1156 6554 5610 1382 225 10 19 chr1 98383869 98384176 -144280177 - AluJo SINE Alu -8 304 1 4267 211 44 56 chr1 98384176 98385080 -144279273 - L1M2 LINE L1 -2100 5610 4697 1736 149 35 17 chr1 98385080 98385369 -144278984 - AluSx SINE Alu -18 294 1 4267 211 44 56 chr1 98385369 98386189 -144278164 - L1M2 LINE L1 -3013 4697 1350 1450 228 23 8 chr1 98386410 98386761 -144277592 - L1M2 LINE L1 -6666 823 468 405 272 0 10 chr1 98387298 98387401 -144276952 + MER119 DNA MER1_type 482 583 0 700 186 16 0 chr1 98387906 98388035 -144276318 + FLAM_C SINE Alu 1 131 -12 999 211 204 14 chr1 98388653 98388942 -144275411 - MER2 DNA MER2_type 0 344 1 563 114 0 0 chr1 98389089 98389177 -144275176 - L1PB4 LINE L1 0 6156 6069 429 309 76 34 chr1 98389192 98389428 -144274925 - MIR SINE MIR 0 262 17 25 65 0 0 chr1 98390576 98390622 -144273731 + AT_rich Low_complexity Low_complexity 1 46 0 1977 148 3 0 chr1 98391623 98391914 -144272439 + AluSx SINE Alu 1 292 -20 633 290 16 59 chr1 98391919 98392174 -144272179 - L1ME2 LINE L1 -9 6155 5912 294 369 135 20 chr1 98392175 98392419 -144271934 + L2 LINE L2 2976 3247 -25 25 0 0 0 chr1 98392703 98392728 -144271625 + AT_rich Low_complexity Low_complexity 1 25 0 2030 114 0 7 chr1 98393137 98393435 -144270918 - AluSc SINE Alu -13 296 1 6895 157 40 35 chr1 98393724 98396113 -144268240 + L1MA7 LINE L1 3888 6291 0 22 56 0 0 chr1 98396324 98396360 -144267993 + AT_rich Low_complexity Low_complexity 1 36 0 2437 227 56 22 chr1 98396831 98397367 -144266986 - L1ME1 LINE L1 -29 6137 5572 1717 197 17 0 chr1 98397367 98397662 -144266691 + AluJo SINE Alu 1 300 -12 2437 227 56 22 chr1 98397662 98397799 -144266554 - L1ME1 LINE L1 -594 5572 5441 800 84 0 0 chr1 98398030 98398137 -144266216 + AluSc SINE Alu 192 298 -11 272 302 43 52 chr1 98398717 98398833 -144265520 + MIR3 SINE MIR 63 177 -31 262 310 85 82 chr1 98399197 98399610 -144264743 + L2 LINE L2 2162 2575 -739 212 339 32 59 chr1 98399645 98399831 -144264522 + L2 LINE L2 2676 2856 -458 208 190 0 69 chr1 98399992 98400050 -144264303 + (CATA)n Simple_repeat Simple_repeat 1 54 0 267 31 0 0 chr1 98400086 98400118 -144264235 + (CA)n Simple_repeat Simple_repeat 2 33 0 267 222 0 0 chr1 98400199 98400253 -144264100 + LTR33A LTR ERVL 439 492 -31 497 299 75 18 chr1 98400515 98401205 -144263148 - L1MEd LINE L1 -4763 1547 692 591 260 67 64 chr1 98401262 98401692 -144262661 - L1MEd LINE L1 -3645 2484 2085 274 116 0 0 chr1 98401876 98401919 -144262434 - MADE1 DNA Mariner -1 79 37 572 290 98 40 chr1 98402003 98402183 -144262170 - L1MEd LINE L1 -4612 1698 1530 2565 144 42 5 chr1 98402183 98402593 -144261760 - MSTA LTR MaLR -2 426 2 572 290 98 40 chr1 98402593 98403059 -144261294 - L1MEd LINE L1 -4780 1530 964 278 353 29 69 chr1 98403073 98403246 -144261107 - L2 LINE L2 -92 3180 3015 251 232 121 20 chr1 98404176 98404275 -144260078 + MIR SINE MIR 84 192 -70 512 299 184 14 chr1 98404315 98404522 -144259831 - MIR SINE MIR -15 247 6 2132 82 54 0 chr1 98404631 98404910 -144259443 - AluSc SINE Alu -15 294 1 666 333 106 21 chr1 98404926 98405313 -144259040 - L3 LINE CR1 -47 1530 1111 706 270 33 47 chr1 98405517 98405732 -144258621 - MIR SINE MIR -10 252 41 261 238 95 12 chr1 98405890 98405974 -144258379 + MIR SINE MIR 113 203 -59 427 187 0 0 chr1 98406034 98406135 -144258218 - FLAM_A SINE Alu 0 143 43 2347 88 7 3 chr1 98406475 98406781 -144257572 + AluSg1 SINE Alu 1 307 -2 1122 166 56 6 chr1 98407051 98407088 -144257265 + L1P LINE L1 3314 3348 -2798 5962 95 60 11 chr1 98407088 98407797 -144256556 - L1PA13 LINE L1 -2 6161 5436 2276 97 0 0 chr1 98407797 98408087 -144256266 + AluSg SINE Alu 1 290 -20 5962 95 60 11 chr1 98408087 98408434 -144255919 - L1PA13 LINE L1 -727 5436 5108 1122 166 56 6 chr1 98408434 98408647 -144255706 + L1P LINE L1 3348 3566 -2580 1155 240 28 21 chr1 98409126 98409409 -144254944 - MER82 DNA MER2_type -10 643 359 390 161 111 0 chr1 98409576 98409657 -144254696 + L1MD3 LINE L1 7905 7994 -1 201 305 17 17 chr1 98409903 98409962 -144254391 + MIR3 SINE MIR 149 207 -1 26 64 0 0 chr1 98410051 98410098 -144254255 + AT_rich Low_complexity Low_complexity 1 47 0 811 156 0 15 chr1 98410208 98410343 -144254010 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr1 98410601 98410629 -144253724 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 98411024 98411053 -144253300 + AT_rich Low_complexity Low_complexity 1 29 0 187 226 145 65 chr1 98411759 98411821 -144252532 + MER5B DNA MER1_type 87 153 -25 2362 102 3 0 chr1 98412040 98412345 -144252008 + AluSp SINE Alu 1 306 -7 1012 298 98 18 chr1 98412716 98413294 -144251059 + L2 LINE L2 2682 3313 0 1921 122 7 21 chr1 98413629 98413943 -144250410 - AluSx SINE Alu 0 310 1 417 177 121 78 chr1 98414189 98414330 -144250023 - L1MA10 LINE L1 -18 6316 6170 195 129 0 0 chr1 98414367 98414398 -144249955 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1930 122 0 53 chr1 98414507 98414827 -144249526 - AluSx SINE Alu -9 303 1 357 197 53 0 chr1 98415292 98415368 -144248985 - MER116 DNA Mariner 0 80 1 1387 134 87 4 chr1 98416125 98416356 -144247997 - Tigger3(Golem) DNA MER2_type 0 3029 2780 277 171 0 0 chr1 98416356 98416397 -144247956 - Tigger3(Golem) DNA MER2_type -2979 50 10 1773 207 57 51 chr1 98416915 98417408 -144246945 - MLT1D LTR MaLR -4 501 6 2125 158 44 22 chr1 98417464 98417886 -144246467 - MSTB1 LTR MaLR 0 419 1 2163 210 34 19 chr1 98418265 98418794 -144245559 + L1MA9 LINE L1 5738 6274 -38 21 0 0 0 chr1 98418794 98418815 -144245538 + AT_rich Low_complexity Low_complexity 1 21 0 2816 10 0 0 chr1 98419292 98419599 -144244754 - AluYa5 SINE Alu -4 307 1 206 57 57 0 chr1 98419782 98419817 -144244536 + T-rich Low_complexity Low_complexity 3 39 0 25 0 0 0 chr1 98420282 98420307 -144244046 + AT_rich Low_complexity Low_complexity 1 25 0 1879 178 12 30 chr1 98420683 98421082 -144243271 - L1MB5 LINE L1 0 6672 6281 1031 133 64 43 chr1 98421082 98421270 -144243083 + MER46A DNA MER2_type 44 235 -1 1198 243 37 10 chr1 98421270 98421566 -144242787 - L1MB5 LINE L1 -390 6282 5979 689 241 14 67 chr1 98421581 98421863 -144242490 - L1MB5 LINE L1 -3569 3075 2809 365 226 118 20 chr1 98421864 98421966 -144242387 - L1MB5 LINE L1 -3888 2758 2647 1165 155 0 0 chr1 98421982 98422156 -144242197 - AluSx SINE Alu -83 229 56 886 192 0 0 chr1 98422160 98422311 -144242042 - AluSq/x SINE Alu -162 151 1 971 201 0 0 chr1 98422344 98422518 -144241835 + FRAM SINE Alu 1 171 -5 1328 278 26 102 chr1 98422548 98423290 -144241063 - MER21B LTR ERV1 -155 708 24 344 209 57 48 chr1 98423309 98423414 -144240939 - L1MB5 LINE L1 -4020 2626 2521 1790 183 3 3 chr1 98423422 98423723 -144240630 - AluJo SINE Alu -11 301 1 1188 158 5 0 chr1 98423783 98423967 -144240386 - AluJo SINE Alu -116 196 12 1865 114 13 13 chr1 98423994 98424300 -144240053 - L1MC1 LINE L1 -347 5986 5681 414 261 192 0 chr1 98424302 98424536 -144239817 - L1MB5 LINE L1 -4180 2466 2188 2492 53 0 10 chr1 98424538 98424838 -144239515 + AluY SINE Alu 1 297 -14 245 125 0 21 chr1 98424901 98424949 -144239404 + (CCCCCT)n Simple_repeat Simple_repeat 4 50 0 3268 237 108 39 chr1 98424990 98425177 -144239176 - L1MB5 LINE L1 -4627 2019 1846 2194 119 0 0 chr1 98425177 98425470 -144238883 + AluSx SINE Alu 6 298 -14 3268 237 108 39 chr1 98425470 98426356 -144237997 - L1MB5 LINE L1 -4800 1846 1023 3331 119 14 74 chr1 98426356 98427004 -144237349 + MER4B LTR ERV1 1 609 -1 3268 237 108 39 chr1 98427004 98427428 -144236925 - L1MB5 LINE L1 -5623 1023 630 2336 78 0 32 chr1 98427428 98427737 -144236616 - AluY SINE Alu -12 299 1 3268 237 108 39 chr1 98427737 98428085 -144236268 - L1MB5 LINE L1 -6016 630 49 1954 197 80 48 chr1 98428561 98429124 -144235229 + MER119 DNA MER1_type 3 583 0 210 305 67 67 chr1 98429288 98429393 -144234960 + L2 LINE L2 3149 3253 -19 362 224 22 60 chr1 98430678 98430812 -144233541 - L1MB8 LINE L1 -4 6174 6046 2724 221 161 72 chr1 98430907 98431473 -144232880 - L1MEc LINE L1 -4898 1498 984 299 184 3 0 chr1 98431473 98431537 -144232816 + MLT1E1 LTR MaLR 403 654 0 2724 221 161 72 chr1 98431537 98432205 -144232148 - L1MEc LINE L1 -5412 984 85 1528 154 104 11 chr1 98432847 98433126 -144231227 - AluSx SINE Alu -7 305 1 30 0 0 0 chr1 98433639 98433669 -144230684 + AT_rich Low_complexity Low_complexity 1 30 0 1651 170 59 0 chr1 98433849 98434138 -144230215 - AluJo SINE Alu -6 306 1 319 252 45 0 chr1 98435435 98435546 -144228807 + Charlie7 DNA MER1_type 40 155 -2457 234 322 168 28 chr1 98436103 98436246 -144228107 - MIR3 SINE MIR -31 177 15 222 284 70 22 chr1 98437072 98437155 -144227198 - MIR3 SINE MIR -62 146 67 2275 109 3 0 chr1 98437155 98437459 -144226894 - AluSp SINE Alu -8 305 1 222 284 70 22 chr1 98437459 98437519 -144226834 - MIR3 SINE MIR -141 67 11 707 303 46 8 chr1 98437831 98438092 -144226261 - L2 LINE L2 -2296 1018 748 1971 124 3 7 chr1 98438094 98438422 -144225931 + AluSx SINE Alu 1 327 0 2243 258 164 33 chr1 98438448 98439091 -144225262 - HAL1 LINE L1 -195 2312 1754 521 101 13 0 chr1 98439091 98439170 -144225183 + MADE1 DNA Mariner 1 80 0 2243 258 164 33 chr1 98439170 98439870 -144224483 - HAL1 LINE L1 -753 1754 786 1884 138 35 3 chr1 98439870 98440159 -144224194 + AluSq SINE Alu 1 298 -15 2243 258 164 33 chr1 98440159 98440176 -144224177 - HAL1 LINE L1 -1721 786 773 2239 81 7 0 chr1 98440837 98441146 -144223207 + AluSx SINE Alu 1 311 0 782 147 0 70 chr1 98441200 98441357 -144222996 - Tigger2 DNA MER2_type -1 2717 2572 * 5001 146 26 6 chr1 98441353 98442189 -144222164 - Tigger2 DNA MER2_type -1863 855 3 1910 145 33 12 chr1 98442331 98442668 -144221685 + MER2 DNA MER2_type 1 344 0 2387 81 3 0 chr1 98442804 98443100 -144221253 + AluSp SINE Alu 5 301 -12 780 200 24 24 chr1 98443148 98443313 -144221040 + AluJo SINE Alu 116 280 -32 190 302 23 0 chr1 98443335 98443378 -144220975 + L2 LINE L2 3211 3254 -18 566 296 54 0 chr1 98444248 98444434 -144219919 - MIR SINE MIR -38 224 29 604 226 51 0 chr1 98444587 98444724 -144219629 - MIR SINE MIR -62 200 57 189 216 20 39 chr1 98444736 98444787 -144219566 - L2 LINE L2 -4 3268 3219 998 176 95 31 chr1 98444817 98445039 -144219314 - MER46A DNA MER2_type 0 236 1 227 387 95 7 chr1 98445470 98445607 -144218746 + L2 LINE L2 3123 3271 -1 2406 98 0 0 chr1 98445766 98446072 -144218281 + AluSq SINE Alu 1 306 -7 2266 93 14 0 chr1 98446078 98446367 -144217986 + AluSc SINE Alu 3 295 -14 589 183 135 0 chr1 98446561 98446665 -144217688 + FLAM_C SINE Alu 1 118 -15 250 215 139 0 chr1 98446883 98446962 -144217391 + L1MEd LINE L1 682 771 -5348 31 76 0 0 chr1 98446962 98447028 -144217325 + AT_rich Low_complexity Low_complexity 1 66 0 301 143 133 48 chr1 98447101 98447206 -144217147 + L1MC5 LINE L1 7737 7850 -111 694 256 85 22 chr1 98447212 98447561 -144216792 + L1MEd LINE L1 895 1306 -4880 942 310 58 24 chr1 98448233 98448614 -144215739 + LTR33 LTR ERVL 126 519 -2 1710 213 93 30 chr1 98448862 98449356 -144214997 - MER119 DNA MER1_type -3 580 56 2289 116 0 3 chr1 98449816 98450127 -144214226 + AluSq SINE Alu 1 310 -3 2327 149 148 25 chr1 98450378 98450940 -144213413 - LTR10E LTR ERV1 -2 631 1 2138 121 3 3 chr1 98451043 98451340 -144213013 - AluSx SINE Alu -15 297 1 300 307 0 30 chr1 98452556 98452657 -144211696 + MIR SINE MIR 159 256 -6 21 0 0 0 chr1 98453079 98453100 -144211253 + AT_rich Low_complexity Low_complexity 1 21 0 595 323 16 11 chr1 98453319 98453505 -144210848 + MIR3 SINE MIR 16 202 -6 642 201 83 35 chr1 98453746 98453975 -144210378 - L1MC5 LINE L1 -32 7929 7690 2224 110 0 46 chr1 98454857 98455184 -144209169 - AluSq SINE Alu -1 312 1 2215 109 6 0 chr1 98455421 98455732 -144208621 - AluSp SINE Alu 0 313 1 610 165 10 0 chr1 98455778 98455881 -144208472 + FLAM_A SINE Alu 30 133 -9 24 0 0 0 chr1 98456371 98456395 -144207958 + AT_rich Low_complexity Low_complexity 1 24 0 2152 100 4 0 chr1 98457000 98457318 -144207035 - AluSc SINE Alu 0 319 1 196 289 23 70 chr1 98457540 98457668 -144206685 + MIR SINE MIR 21 142 -66 1347 186 63 22 chr1 98458354 98458623 -144205730 - AluJo SINE Alu -30 282 3 2122 125 0 3 chr1 98458841 98459136 -144205217 - AluSq SINE Alu -19 294 1 2261 104 0 0 chr1 98459333 98459621 -144204732 - AluSx SINE Alu -24 288 1 414 329 85 6 chr1 98460303 98460467 -144203886 + L2 LINE L2 2370 2546 -768 1690 184 14 7 chr1 98461177 98461459 -144202894 + AluJo SINE Alu 6 289 -23 21 0 0 0 chr1 98462826 98462847 -144201506 + AT_rich Low_complexity Low_complexity 1 21 0 188 250 0 0 chr1 98463110 98463146 -144201207 - MIR SINE MIR -180 82 47 647 268 68 86 chr1 98463169 98463505 -144200848 + L2 LINE L2 2217 2546 -768 532 314 89 22 chr1 98464012 98464327 -144200026 + L2 LINE L2 2973 3308 -5 318 295 193 6 chr1 98464344 98464510 -144199843 + MIR SINE MIR 52 248 -14 2057 116 7 10 chr1 98464571 98464873 -144199480 + AluSx SINE Alu 1 301 -11 2167 125 0 0 chr1 98464958 98465261 -144199092 - AluSx SINE Alu -9 303 1 801 103 0 0 chr1 98465493 98465600 -144198753 + U6 snRNA snRNA 1 107 0 11460 107 40 1 chr1 98465600 98466140 -144198213 + L1PA7 LINE L1 3476 3994 -2160 2125 111 0 10 chr1 98466140 98466447 -144197906 + AluSg SINE Alu 1 304 -6 11460 107 40 1 chr1 98466447 98467080 -144197273 + L1PA7 LINE L1 3994 4601 -1553 2373 113 0 0 chr1 98467080 98467391 -144196962 + AluSx SINE Alu 1 311 -1 11460 107 40 1 chr1 98467391 98468857 -144195496 + L1PA7 LINE L1 4601 6141 -13 489 17 0 0 chr1 98468895 98468953 -144195400 + (TA)n Simple_repeat Simple_repeat 1 58 0 2255 108 7 0 chr1 98468968 98469275 -144195078 + AluSp SINE Alu 2 310 -3 196 293 24 49 chr1 98469610 98469692 -144194661 - L2 LINE L2 -30 3283 3204 256 333 129 62 chr1 98469698 98470466 -144193887 + L2 LINE L2 2245 3084 -188 307 250 29 0 chr1 98470497 98470565 -144193788 + L2 LINE L2 3244 3313 0 2260 94 7 3 chr1 98471294 98471593 -144192760 - AluSq SINE Alu -13 300 1 1765 168 7 19 chr1 98471653 98471962 -144192391 + AluJb SINE Alu 3 307 -5 2211 120 0 7 chr1 98472134 98472443 -144191910 + AluSx SINE Alu 1 307 -5 2256 108 0 0 chr1 98472443 98472740 -144191613 + AluSg SINE Alu 1 297 -13 431 273 14 43 chr1 98473571 98473710 -144190643 + MIR SINE MIR 16 150 -112 293 299 0 23 chr1 98473763 98473850 -144190503 + L2 LINE L2 3184 3268 -4 704 323 156 50 chr1 98474027 98474974 -144189379 + L2 LINE L2 2205 3266 -6 300 245 106 11 chr1 98475020 98475114 -144189239 - MIR SINE MIR -4 258 156 22 0 0 0 chr1 98475127 98475149 -144189204 + AT_rich Low_complexity Low_complexity 1 22 0 1035 194 0 5 chr1 98475149 98475345 -144189008 - L1PB4 LINE L1 -2 6154 5960 412 308 34 7 chr1 98475345 98475491 -144188862 - MIR SINE MIR -100 162 13 23 54 0 0 chr1 98475620 98475657 -144188696 + AT_rich Low_complexity Low_complexity 1 37 0 1777 132 117 6 chr1 98475985 98476310 -144188043 - MER46B DNA MER2_type 0 236 1 453 133 0 0 chr1 98476316 98476391 -144187962 + (TCCCC)n Simple_repeat Simple_repeat 4 78 0 2108 117 3 19 chr1 98476430 98476739 -144187614 - AluSq SINE Alu -9 304 1 27 0 0 0 chr1 98478130 98478157 -144186196 + AT_rich Low_complexity Low_complexity 1 27 0 808 271 35 9 chr1 98478708 98478937 -144185416 - MIR SINE MIR -26 236 2 240 143 0 0 chr1 98481124 98481166 -144183187 + (AAATG)n Simple_repeat Simple_repeat 3 44 0 240 35 0 0 chr1 98481319 98481348 -144183005 + (TTG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr1 98484266 98484288 -144180065 + AT_rich Low_complexity Low_complexity 1 22 0 471 271 138 59 chr1 98485789 98485987 -144178366 + L1ME3A LINE L1 682 863 -5342 1574 169 9 85 chr1 98485987 98486306 -144178047 + AluJo SINE Alu 1 295 -17 471 271 138 59 chr1 98486306 98486579 -144177774 + L1ME3A LINE L1 863 1190 -5015 270 229 229 0 chr1 98486587 98486683 -144177670 + L1ME3A LINE L1 1226 1343 -4862 323 273 169 23 chr1 98486703 98486875 -144177478 + HAL1 LINE L1 1397 1593 -914 307 309 41 21 chr1 98487277 98487533 -144176820 + L1ME3A LINE L1 2204 2431 -3784 2417 141 20 3 chr1 98487573 98487963 -144176390 - Tigger4(Zombi) DNA MER2_type -136 2595 2199 829 145 45 3 chr1 98487965 98488190 -144176163 - AluJb SINE Alu -19 293 1 2005 123 7 7 chr1 98488217 98488509 -144175844 + AluSp SINE Alu 1 292 -21 1998 141 21 0 chr1 98488518 98488801 -144175552 + AluSx SINE Alu 1 289 -23 957 117 89 39 chr1 98488801 98488817 -144175536 - Tigger4(Zombi) DNA MER2_type -547 2184 2170 261 0 0 0 chr1 98488817 98488846 -144175507 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 957 117 89 39 chr1 98488846 98489009 -144175344 - Tigger4(Zombi) DNA MER2_type -561 2170 1996 364 250 214 5 chr1 98489014 98489234 -144175119 + L1ME3A LINE L1 3690 3955 -2260 25 0 0 0 chr1 98489303 98489328 -144175025 + AT_rich Low_complexity Low_complexity 1 25 0 970 260 157 11 chr1 98489328 98489979 -144174374 + L1ME3A LINE L1 4079 4831 -1384 239 241 51 38 chr1 98490175 98490254 -144174099 + L1ME3A LINE L1 4976 5055 -1160 276 265 51 8 chr1 98490287 98490404 -144173949 + L1ME3A LINE L1 5164 5285 -930 2131 96 0 0 chr1 98490404 98490674 -144173679 + AluSg1 SINE Alu 1 270 -39 2138 121 3 3 chr1 98491783 98492080 -144172273 + AluSx SINE Alu 1 297 -15 537 203 271 20 chr1 98492183 98492434 -144171919 + LTR10E LTR ERV1 1 314 -319 1242 151 13 27 chr1 98492443 98492668 -144171685 + AluSg/x SINE Alu 91 312 0 276 30 0 0 chr1 98493458 98493491 -144170862 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1824 136 4 11 chr1 98493491 98493771 -144170582 - AluSx SINE Alu -32 280 3 2373 82 7 0 chr1 98494145 98494450 -144169903 + AluSx SINE Alu 1 307 -5 3613 86 56 11 chr1 98494453 98494989 -144169364 + L1PA10 LINE L1 5599 6158 -10 1108 255 106 12 chr1 98494989 98495471 -144168882 + L1ME3A LINE L1 5458 5984 -255 239 304 43 0 chr1 98495650 98495765 -144168588 + L2 LINE L2 1002 1121 -2193 2045 125 7 0 chr1 98495772 98496068 -144168285 - AluSq SINE Alu -15 298 1 2320 109 0 3 chr1 98496186 98496498 -144167855 - AluSx SINE Alu -1 311 1 1798 143 13 10 chr1 98496683 98496816 -144167537 + AluJo SINE Alu 1 132 -180 2293 88 3 10 chr1 98496816 98497111 -144167242 + AluSx SINE Alu 2 294 -18 1798 143 13 10 chr1 98497111 98497277 -144167076 + AluJo SINE Alu 132 301 -11 181 275 0 0 chr1 98497371 98497411 -144166942 - MIR SINE MIR -164 98 59 705 281 89 3 chr1 98497526 98497853 -144166500 - L1MC4 LINE L1 -568 7474 7120 297 264 22 0 chr1 98497998 98498089 -144166264 - L1MC4a LINE L1 -963 6845 6759 187 315 0 0 chr1 98498090 98498144 -144166209 - L2 LINE L2 -212 3060 3007 2751 204 105 17 chr1 98498182 98498875 -144165478 + MER21B LTR ERV1 50 803 -60 306 0 0 0 chr1 98499115 98499149 -144165204 + (TG)n Simple_repeat Simple_repeat 2 35 0 310 331 96 7 chr1 98499698 98499834 -144164519 + MIR3 SINE MIR 10 157 -51 2208 87 14 0 chr1 98500007 98500294 -144164059 + AluSx SINE Alu 5 295 -17 216 0 0 0 chr1 98501188 98501212 -144163141 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1472 204 25 0 chr1 98501370 98501645 -144162708 + AluJo SINE Alu 1 282 -30 825 106 9 0 chr1 98501694 98501836 -144162517 + AluSg/x SINE Alu 169 311 0 1990 108 0 28 chr1 98502653 98502939 -144161414 + AluSx SINE Alu 11 288 -24 22 0 0 0 chr1 98503298 98503320 -144161033 + AT_rich Low_complexity Low_complexity 1 22 0 2363 66 0 3 chr1 98504020 98504308 -144160045 + AluSc SINE Alu 1 287 -22 2022 127 24 0 chr1 98505001 98505292 -144159061 - AluSx SINE Alu -14 298 1 1958 143 23 0 chr1 98505850 98506150 -144158203 - AluSx SINE Alu -5 307 1 1269 161 5 28 chr1 98506156 98506374 -144157979 - AluSg/x SINE Alu -17 293 81 2008 132 13 10 chr1 98506485 98506796 -144157557 + AluSx SINE Alu 1 312 0 2314 104 3 0 chr1 98507303 98507600 -144156753 - AluSx SINE Alu -14 298 1 2331 106 3 0 chr1 98508191 98508494 -144155859 - AluSx SINE Alu -8 304 1 2060 118 21 3 chr1 98508522 98508811 -144155542 - AluSg SINE Alu -16 294 1 2397 91 0 0 chr1 98509381 98509679 -144154674 - AluSg SINE Alu -12 298 1 2103 124 0 7 chr1 98510070 98510382 -144153971 + AluSx SINE Alu 5 312 0 748 286 122 15 chr1 98511010 98511615 -144152738 + L1M4 LINE L1 3656 4325 -1821 1092 97 0 0 chr1 98511760 98511905 -144152448 + AluSp/q SINE Alu 156 300 -13 928 206 6 0 chr1 98511908 98512073 -144152280 + AluJo/FRAM SINE Alu 137 302 -10 363 315 107 28 chr1 98512079 98512295 -144152058 + L1M4 LINE L1 3750 3982 -2164 1640 172 10 10 chr1 98512484 98512774 -144151579 + AluJb SINE Alu 3 292 -20 611 169 22 81 chr1 98512791 98512884 -144151469 + AluJo/FLAM SINE Alu 6 90 -222 1878 106 22 22 chr1 98512884 98513157 -144151196 - AluSg1 SINE Alu -36 273 1 611 169 22 81 chr1 98513157 98513199 -144151154 + AluJo/FLAM SINE Alu 90 133 -179 287 250 121 16 chr1 98513346 98513470 -144150883 - MIR SINE MIR -1 261 125 2121 100 0 42 chr1 98513567 98513877 -144150476 - AluSg SINE Alu -13 297 1 314 275 232 7 chr1 98515030 98515168 -144149185 - MIR SINE MIR -17 245 77 223 256 139 81 chr1 98515384 98515556 -144148797 + MIR SINE MIR 65 246 -16 1100 52 15 0 chr1 98515662 98515797 -144148556 + AluSp SINE Alu 1 137 -176 1840 131 55 0 chr1 98515799 98516090 -144148263 + AluSp SINE Alu 5 311 -2 33 0 0 0 chr1 98516211 98516244 -144148109 + AT_rich Low_complexity Low_complexity 1 33 0 1727 126 63 19 chr1 98516301 98516570 -144147783 + AluJb SINE Alu 1 281 -31 1709 176 20 17 chr1 98516622 98516923 -144147430 - AluJb SINE Alu -4 308 7 2384 63 0 13 chr1 98518998 98519298 -144145055 - AluY SINE Alu -15 296 1 1673 152 103 17 chr1 98519299 98519601 -144144752 - MER2 DNA MER2_type -13 332 5 667 221 167 65 chr1 98519619 98519882 -144144471 + L1ME2 LINE L1 5729 6018 -146 1908 150 10 0 chr1 98519888 98520182 -144144171 - AluSg SINE Alu -13 297 1 1885 73 4 0 chr1 98520190 98520422 -144143931 - AluY SINE Alu -15 296 64 741 111 0 0 chr1 98570422 98570521 -144093832 - FLAM_C SINE Alu -38 105 7 2873 136 37 4 chr1 98570980 98571789 -144092564 - MER54A LTR ERVL 0 901 1 1755 156 0 11 chr1 98571880 98572208 -144092145 + AluJb SINE Alu 10 334 0 254 263 126 21 chr1 98572579 98572674 -144091679 + MIR SINE MIR 77 181 -81 187 200 0 0 chr1 98572672 98572707 -144091646 + L2 LINE L2 3263 3297 -16 * 1583 169 49 7 chr1 98573960 98574268 -144090085 + MLT1A1 LTR MaLR 6 326 -39 1368 280 130 20 chr1 98574665 98575286 -144089067 + L2 LINE L2 2458 3143 -170 2379 113 0 0 chr1 98575286 98575597 -144088756 - AluSq SINE Alu 0 313 3 44 0 0 0 chr1 98575690 98575734 -144088619 + AT_rich Low_complexity Low_complexity 1 44 0 845 163 64 69 chr1 98575842 98576075 -144088278 + MLT1D LTR MaLR 5 236 -269 1073 119 0 6 chr1 98576080 98576248 -144088105 + MLT1D LTR MaLR 337 503 -2 534 273 28 23 chr1 98576333 98576384 -144087969 - L1MC/D LINE L1 -2103 5705 5656 2656 112 46 7 chr1 98576384 98576796 -144087557 + MSTA LTR MaLR 1 428 0 534 273 28 23 chr1 98576796 98576920 -144087433 - L1MC/D LINE L1 -2152 5656 5529 2166 129 3 7 chr1 98577327 98577630 -144086723 + AluSx SINE Alu 1 302 -10 2119 118 16 0 chr1 98578202 98578507 -144085846 - AluSq SINE Alu -3 310 1 1011 239 70 12 chr1 98578590 98578833 -144085520 + MIR SINE MIR 6 262 0 1544 171 56 30 chr1 98579071 98579375 -144084978 - AluJb SINE Alu 0 312 1 24 32 0 0 chr1 98579748 98579779 -144084574 + AT_rich Low_complexity Low_complexity 1 31 0 781 191 7 7 chr1 98579998 98580134 -144084219 + MER5A DNA MER1_type 1 136 -53 303 122 0 0 chr1 98580139 98580188 -144084165 + (TG)n Simple_repeat Simple_repeat 2 50 0 682 178 49 12 chr1 98580193 98580356 -144083997 - L1MB7 LINE L1 -9 6175 6007 1003 173 163 5 chr1 98580378 98580691 -144083662 + MER82 DNA MER2_type 251 653 0 385 374 75 33 chr1 98580735 98581069 -144083284 - L2 LINE L2 0 3272 2925 342 324 43 75 chr1 98582243 98582616 -144081737 + L2 LINE L2 2115 2475 -839 21 0 0 0 chr1 98582727 98582748 -144081605 + AT_rich Low_complexity Low_complexity 1 21 0 1247 171 5 9 chr1 98582916 98583127 -144081226 - AluJo SINE Alu -102 210 1 623 269 172 43 chr1 98583198 98583547 -144080806 - L2 LINE L2 -1 3312 2919 507 221 98 8 chr1 98585075 98585197 -144079156 - L2 LINE L2 0 3313 3181 1024 108 29 0 chr1 98585548 98585687 -144078666 - AluSq/x SINE Alu -169 143 1 356 270 140 41 chr1 98585914 98586200 -144078153 - L2 LINE L2 -47 3266 2079 265 352 151 20 chr1 98586467 98586666 -144077687 + L2 LINE L2 3047 3271 -1 2268 88 7 0 chr1 98586813 98587107 -144077246 + AluSq SINE Alu 1 296 -17 947 262 31 19 chr1 98587300 98587624 -144076729 + L1ME3 LINE L1 5834 6161 -1 22 0 0 73 chr1 98587994 98588035 -144076318 + AT_rich Low_complexity Low_complexity 1 38 0 30 27 0 0 chr1 98588867 98588904 -144075449 + AT_rich Low_complexity Low_complexity 1 37 0 317 270 90 0 chr1 98589107 98589196 -144075157 - MER58A DNA MER1_type -10 97 1 670 219 46 5 chr1 98589196 98589392 -144074961 - L1M4 LINE L1 -1566 4580 4377 1148 269 27 0 chr1 98589535 98589936 -144074417 - L1M4 LINE L1 -2573 3573 3162 301 311 33 0 chr1 98591200 98591290 -144073063 + L2 LINE L2 3184 3276 -37 1427 196 36 53 chr1 98591716 98592017 -144072336 - AluJb SINE Alu -16 296 1 648 178 48 154 chr1 98592295 98592588 -144071765 - MIR SINE MIR 0 262 1 625 241 47 30 chr1 98593509 98593741 -144070612 - MER106A DNA MER1_type 0 236 1 221 326 14 64 chr1 98593760 98593901 -144070452 + L2 LINE L2 2957 3090 -182 1302 143 0 5 chr1 98593915 98594139 -144070214 - MER6 DNA MER2_type 0 865 643 * 1752 138 93 0 chr1 98594134 98594445 -144069908 - MLT2D LTR ERVL -56 358 19 182 229 66 82 chr1 98594450 98594511 -144069842 + L2 LINE L2 3250 3309 -4 1060 261 89 3 chr1 98594567 98594881 -144069472 - MLT1I LTR MaLR -2 407 67 2133 191 53 13 chr1 98594961 98595410 -144068943 + MLT1C LTR MaLR 1 467 0 907 95 16 0 chr1 98596528 98596654 -144067699 - AluSg/x SINE Alu -6 306 179 1668 75 136 288 chr1 98596659 98597344 -144067009 + LTR12 LTR ERV1 1 581 -133 1295 97 0 0 chr1 98597344 98597509 -144066844 - AluY SINE Alu -146 165 1 5682 108 72 51 chr1 98597732 98597811 -144066542 + Tigger3b DNA MER2_type 2 78 -2950 2127 126 3 0 chr1 98597811 98598105 -144066248 + AluSx SINE Alu 1 295 -17 5682 108 72 51 chr1 98598105 98598135 -144066218 + Tigger3b DNA MER2_type 78 106 -2922 2343 86 0 0 chr1 98598135 98598427 -144065926 + AluSg SINE Alu 1 292 -18 5682 108 72 51 chr1 98598427 98599079 -144065274 + Tigger3b DNA MER2_type 106 797 -2231 1636 129 21 104 chr1 98599079 98599264 -144065089 - AluYb8 SINE Alu -18 300 152 2330 96 0 0 chr1 98599264 98599556 -144064797 - AluSq SINE Alu -17 296 5 1636 129 21 104 chr1 98599556 98599696 -144064657 - AluYb8 SINE Alu -166 152 2 5682 108 72 51 chr1 98599696 98600065 -144064288 + Tigger3b DNA MER2_type 797 1157 -74 333 158 37 0 chr1 98600108 98600190 -144064163 + (TA)n Simple_repeat Simple_repeat 2 86 0 1402 148 33 73 chr1 98600407 98600567 -144063786 - AluJo SINE Alu -20 292 148 1755 149 7 50 chr1 98600567 98600869 -144063484 - AluJb SINE Alu -23 289 1 1402 148 33 73 chr1 98600869 98601011 -144063342 - AluJo SINE Alu -164 148 2 2993 195 84 19 chr1 98601478 98602382 -144061971 + L1ME1 LINE L1 5205 6332 -2 1965 121 16 7 chr1 98606262 98606567 -144057786 - AluSx SINE Alu -4 308 1 1006 193 137 24 chr1 98606725 98607104 -144057249 + LTR37A LTR ERV1 5 426 0 374 350 42 18 chr1 98607585 98607802 -144056551 + MIR SINE MIR 14 235 -27 2066 129 0 0 chr1 98607956 98608250 -144056103 + AluSq SINE Alu 1 294 -19 201 39 0 0 chr1 98608250 98608276 -144056077 + (GA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr1 98608369 98608390 -144055963 + AT_rich Low_complexity Low_complexity 1 21 0 673 67 0 11 chr1 98608401 98608491 -144055862 + AluY SINE Alu 1 89 -222 968 145 50 6 chr1 98608491 98608650 -144055703 - AluJo SINE Alu -146 166 1 333 162 78 0 chr1 98609009 98609089 -144055264 + L1M4 LINE L1 5550 5645 -519 213 254 18 18 chr1 98609142 98609197 -144055156 + MER5B DNA MER1_type 1 55 -123 1562 189 14 14 chr1 98609705 98609990 -144054363 + AluJo SINE Alu 13 297 -15 2311 101 14 0 chr1 98609994 98610291 -144054062 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr1 98610591 98610619 -144053734 + AT_rich Low_complexity Low_complexity 1 28 0 241 148 131 0 chr1 98611919 98611980 -144052373 + MER116 DNA Mariner 1 69 -11 313 315 40 22 chr1 98612104 98612380 -144051973 - L1MC5 LINE L1 -178 7783 7503 217 247 10 93 chr1 98612451 98612548 -144051805 + MIR SINE MIR 168 256 -6 283 282 169 0 chr1 98613685 98613809 -144050544 + L1M4 LINE L1 3740 3884 -2262 300 357 41 18 chr1 98613904 98614075 -144050278 - L2 LINE L2 -2951 363 189 409 321 267 19 chr1 98614325 98615138 -144049215 + L2 LINE L2 1177 2191 -1123 261 337 124 51 chr1 98615551 98615824 -144048529 + L3 LINE CR1 645 937 -640 2496 31 0 0 chr1 98616418 98616708 -144047645 - AluY SINE Alu -8 303 14 28 0 0 0 chr1 98616994 98617022 -144047331 + GC_rich Low_complexity Low_complexity 1 28 0 389 222 46 0 chr1 98618286 98618394 -144045959 - MER90 LTR ERV1 -237 338 226 * 852 217 62 56 chr1 98618385 98618689 -144045664 - MER90 LTR ERV1 -269 306 1 556 256 186 16 chr1 98618735 98618977 -144045376 - L2 LINE L2 -103 3210 2928 2328 102 0 19 chr1 98619025 98619339 -144045014 + AluSg SINE Alu 1 308 -2 842 178 115 0 chr1 98619572 98619746 -144044607 + MIR SINE MIR 4 197 -65 876 262 55 52 chr1 98619941 98620342 -144044011 + MLT1J LTR MaLR 52 453 -58 3727 246 29 8 chr1 98621054 98622053 -144042300 + L1P LINE L1 2675 3703 -2443 2321 66 3 3 chr1 98622053 98622355 -144041998 + AluY SINE Alu 1 302 -9 3727 246 29 8 chr1 98622355 98622503 -144041850 + L1P LINE L1 3703 3846 -2300 1503 144 0 93 chr1 98622501 98622849 -144041504 + L1P5 LINE L1 5420 5730 -424 * 553 227 39 54 chr1 98623108 98623311 -144041042 - L2 LINE L2 -1 3312 3113 806 113 0 0 chr1 98623423 98623529 -144040824 + FLAM_C SINE Alu 1 106 -37 252 0 0 0 chr1 98623539 98623567 -144040786 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1025 155 0 18 chr1 98623643 98623811 -144040542 - FRAM SINE Alu -12 164 1 668 197 8 0 chr1 98623857 98623984 -144040369 - FLAM_A SINE Alu -2 131 4 467 184 0 10 chr1 98623992 98624095 -144040258 + CT-rich Low_complexity Low_complexity 3 104 0 2992 240 31 31 chr1 98624625 98625678 -144038675 - L1M4 LINE L1 -1682 5180 4128 350 241 107 0 chr1 98626140 98626251 -144038102 + L1MC5 LINE L1 6769 6891 -917 188 260 70 110 chr1 98626318 98626418 -144037935 - MER5A DNA MER1_type -59 130 35 * 292 219 86 67 chr1 98626335 98626440 -144037913 + MER5A DNA MER1_type 83 189 0 10370 181 92 10 chr1 98626589 98629210 -144035143 - L1PBa LINE L1 -2788 4074 1066 1525 215 57 41 chr1 98629210 98629420 -144034933 + LTR2 LTR ERV1 1 206 -243 180 111 0 0 chr1 98629420 98629447 -144034906 + (TTCTG)n Simple_repeat Simple_repeat 2 28 0 1525 215 57 41 chr1 98629447 98629678 -144034675 + LTR2 LTR ERV1 206 449 0 10370 181 92 10 chr1 98629678 98630706 -144033647 - L1PBa LINE L1 -5796 1066 124 767 219 114 0 chr1 98630844 98631045 -144033308 + MER58A DNA MER1_type 1 224 0 365 318 104 7 chr1 98632993 98633147 -144031206 + MIR SINE MIR 63 231 -31 36 23 0 0 chr1 98633749 98633792 -144030561 + AT_rich Low_complexity Low_complexity 1 43 0 280 216 166 29 chr1 98634332 98634471 -144029882 + MLT1K LTR MaLR 420 577 -11 2443 78 0 0 chr1 98634567 98634862 -144029491 - AluSc SINE Alu -14 295 1 1636 164 34 0 chr1 98634881 98635150 -144029203 - AluJb SINE Alu -31 281 4 339 281 3 11 chr1 98636580 98636670 -144027683 + MER5A DNA MER1_type 27 113 -65 189 331 93 58 chr1 98636688 98636860 -144027493 + L2 LINE L2 3134 3311 -2 725 217 59 30 chr1 98636905 98637108 -144027245 + MER3 DNA MER1_type 1 209 0 1955 134 0 0 chr1 98637312 98637580 -144026773 - AluSx SINE Alu -44 268 1 792 244 6 0 chr1 98637909 98638089 -144026264 - MER58A DNA MER1_type -17 207 27 949 73 0 8 chr1 98640084 98640208 -144024145 + AluSg/x SINE Alu 182 304 -8 3950 214 84 28 chr1 98640223 98640667 -144023686 + L1MB3 LINE L1 3975 4393 -1790 1933 107 13 57 chr1 98640667 98640985 -144023368 + AluSc SINE Alu 1 304 -5 3950 214 84 28 chr1 98640985 98641029 -144023324 + L1MB3 LINE L1 4393 4433 -1750 1769 178 28 0 chr1 98641029 98641316 -144023037 - AluJb SINE Alu -17 295 1 3950 214 84 28 chr1 98641316 98642238 -144022115 + L1MB3 LINE L1 4433 5302 -881 2106 128 0 0 chr1 98642238 98642534 -144021819 + AluSx SINE Alu 1 296 -16 6899 50 48 0 chr1 98642544 98643400 -144020953 + MER11D LTR ERVK 1 897 0 3950 214 84 28 chr1 98643400 98643725 -144020628 + L1MB3 LINE L1 5310 5615 -568 2147 111 30 0 chr1 98643725 98644023 -144020330 - AluSp SINE Alu -6 307 1 3950 214 84 28 chr1 98644023 98644369 -144019984 + L1MB3 LINE L1 5615 6175 -8 1511 158 8 0 chr1 98644457 98644691 -144019662 + AluJb SINE Alu 59 294 -18 666 78 9 70 chr1 98644691 98644806 -144019547 - HY1 scRNA scRNA -3 109 2 550 245 40 20 chr1 98645582 98645733 -144018620 - L1M4b LINE L1 -6700 159 6 745 174 0 7 chr1 98645743 98645881 -144018472 - MER69 DNA AcHobo -1088 138 2 318 148 0 0 chr1 98645933 98645987 -144018366 + (CA)n Simple_repeat Simple_repeat 2 55 0 233 262 0 16 chr1 98646159 98646220 -144018133 + GA-rich Low_complexity Low_complexity 2 61 0 402 21 0 0 chr1 98646230 98646277 -144018076 + (GA)n Simple_repeat Simple_repeat 1 47 0 323 264 212 31 chr1 98647696 98647889 -144016464 - MIR SINE MIR -33 229 2 2002 131 0 26 chr1 98648271 98648577 -144015776 - AluSx SINE Alu -14 298 1 1747 286 39 2 chr1 98648636 98649122 -144015231 + L1M4b LINE L1 97 600 -6259 505 273 0 0 chr1 98649125 98649246 -144015107 + L1M4b LINE L1 665 785 -6074 512 352 22 41 chr1 98649247 98649562 -144014791 + L1M4b LINE L1 2407 2715 -4423 428 299 48 53 chr1 98649705 98649912 -144014441 + L1M4b LINE L1 2619 2824 -4314 2175 249 46 23 chr1 98649914 98650134 -144014219 + L1M4b LINE L1 3852 4066 -2891 210 71 0 0 chr1 98650134 98650162 -144014191 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 2175 249 46 23 chr1 98650162 98650392 -144013961 + L1M4b LINE L1 4066 4289 -2668 1778 139 121 12 chr1 98650392 98650730 -144013623 - THE1C LTR MaLR 0 375 1 2175 249 46 23 chr1 98650730 98651217 -144013136 + L1M4b LINE L1 4289 4811 -2146 734 200 154 0 chr1 98651229 98651449 -144012904 - L1MC4 LINE L1 -1 8041 7788 2555 83 24 19 chr1 98651506 98651878 -144012475 - L1PA11 LINE L1 0 6174 5801 23576 79 9 11 chr1 98652967 98659126 -144005227 - L1PA6 LINE L1 -6 6148 11 955 303 61 24 chr1 98659835 98660247 -144004106 + L2 LINE L2 2887 3313 0 30 77 0 0 chr1 98660483 98660548 -144003805 + AT_rich Low_complexity Low_complexity 1 65 0 3703 40 2 0 chr1 98660548 98660997 -144003356 - L1PA3 LINE L1 -2 6153 5704 299 292 23 31 chr1 98661060 98661190 -144003163 - MIR SINE MIR -10 252 124 2025 124 45 0 chr1 98661214 98661504 -144002849 - AluSx SINE Alu -9 303 1 327 327 117 12 chr1 98662425 98662587 -144001766 - L2 LINE L2 -27 3245 3067 684 176 14 0 chr1 98662710 98662852 -144001501 + L1 LINE L1 4781 4924 -1222 391 246 25 0 chr1 98662857 98662975 -144001378 + L1 LINE L1 5024 5144 -1002 462 143 0 14 chr1 98662983 98663053 -144001300 - AluJ/FLAM SINE Alu -243 69 1 1229 33 0 7 chr1 98663113 98663264 -144001089 - L1PA10 LINE L1 -1 6167 6018 1020 50 0 0 chr1 98663834 98663954 -144000399 - AluSp/q SINE Alu -19 294 175 1354 197 80 0 chr1 98664590 98665008 -143999345 - AluJb SINE Alu 0 441 1 1941 82 39 4 chr1 98665124 98665404 -143998949 + L1PA13 LINE L1 5856 6145 -18 248 250 12 0 chr1 98665411 98665491 -143998862 + GA-rich Low_complexity Low_complexity 4 84 0 1306 262 89 57 chr1 98665641 98665949 -143998404 + L1ME3A LINE L1 5428 5725 -445 1854 164 3 14 chr1 98665949 98666242 -143998111 + AluSx SINE Alu 1 290 -22 1306 262 89 57 chr1 98666242 98666639 -143997714 + L1ME3A LINE L1 5725 6156 -14 447 273 38 6 chr1 98666663 98666846 -143997507 + L1ME3A LINE L1 4409 4597 -1549 227 251 29 74 chr1 98666878 98666918 -143997435 + L1ME3A LINE L1 4881 4921 -1225 8383 174 38 66 chr1 98666918 98668723 -143995630 - MER52A LTR ERV1 0 1755 1 227 251 29 74 chr1 98668723 98668857 -143995496 + L1ME3A LINE L1 4921 5047 -1099 752 270 47 39 chr1 98669054 98669436 -143994917 + L1ME3A LINE L1 5264 5648 -516 351 281 7 0 chr1 98669456 98669591 -143994762 + L1ME3A LINE L1 5837 5972 -198 666 286 62 40 chr1 98669600 98669922 -143994431 - MLT1E LTR MaLR 0 593 265 254 219 0 10 chr1 98669967 98670063 -143994290 + GA-rich Low_complexity Low_complexity 1 95 0 1188 309 192 11 chr1 98670296 98670946 -143993407 - L2 LINE L2 -641 2673 1906 729 277 94 87 chr1 98670975 98671444 -143992909 - L2 LINE L2 -2450 864 393 230 310 50 0 chr1 98671474 98671574 -143992779 + MIR SINE MIR 109 213 -49 1617 179 0 44 chr1 98671752 98672071 -143992282 - AluJo SINE Alu -7 305 1 363 290 13 7 chr1 98672888 98673043 -143991310 + MER70-int LTR ERVL 4516 4671 -352 2233 112 3 0 chr1 98673277 98673589 -143990764 - AluSp SINE Alu 0 313 1 1438 177 90 22 chr1 98673874 98674196 -143990157 + MER101 LTR ERV1 24 367 -107 1066 209 45 32 chr1 98674430 98674865 -143989488 + LTR45B LTR ERV1 12 488 -1 990 253 153 43 chr1 98674867 98675494 -143988859 + L1M2 LINE L1 376 1377 -5832 2470 57 0 0 chr1 98675590 98675886 -143988467 - AluY SINE Alu -15 296 1 874 218 73 5 chr1 98676465 98676671 -143987682 + MER58A DNA MER1_type 1 220 -4 302 181 14 28 chr1 98678006 98678078 -143986275 - LTR18B LTR ERVL -542 72 2 230 279 117 27 chr1 98678429 98678540 -143985813 + MIR SINE MIR 62 182 -80 2221 78 18 3 chr1 98678553 98678837 -143985516 - AluY SINE Alu -19 292 5 228 254 159 14 chr1 98680060 98680198 -143984155 + MLT1K LTR MaLR 420 577 -11 356 289 24 0 chr1 98681668 98681751 -143982602 + MER5A DNA MER1_type 21 105 -84 222 319 165 0 chr1 98681871 98681962 -143982391 + L2 LINE L2 3206 3311 -2 469 262 59 25 chr1 98682007 98682209 -143982144 + MER3 DNA MER1_type 1 209 0 978 214 0 37 chr1 98682720 98682935 -143981418 - MER58A DNA MER1_type -17 207 1 255 61 0 0 chr1 98683963 98683996 -143980357 + (T)n Simple_repeat Simple_repeat 1 33 0 285 337 66 33 chr1 98684284 98684465 -143979888 - MIR SINE MIR -61 201 15 4072 221 48 9 chr1 98684950 98687107 -143977246 + L1MB3 LINE L1 3941 6181 -2 335 295 47 23 chr1 98688117 98688246 -143976107 - L1M4b LINE L1 -6718 141 10 635 188 0 8 chr1 98688260 98688388 -143975965 - MER69 DNA AcHobo -1088 138 12 211 263 0 18 chr1 98688576 98688633 -143975720 + GA-rich Low_complexity Low_complexity 3 58 0 378 0 0 0 chr1 98688640 98688682 -143975671 + (TG)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr1 98688681 98688716 -143975637 + (GA)n Simple_repeat Simple_repeat 1 35 0 * 239 256 231 31 chr1 98690172 98690367 -143973986 - MIR SINE MIR -27 235 2 28 48 0 0 chr1 98690393 98690435 -143973918 + AT_rich Low_complexity Low_complexity 1 42 0 680 205 0 0 chr1 98690598 98690720 -143973633 - AluJb SINE Alu -190 122 1 2401 97 6 0 chr1 98690748 98691059 -143973294 - AluSp SINE Alu 0 313 1 1163 260 35 30 chr1 98691269 98691306 -143973047 + L1M4b LINE L1 97 132 -6727 8388 47 8 0 chr1 98691306 98692264 -143972089 - LTR5 LTR ERVK -3 966 1 1163 260 35 30 chr1 98692264 98692599 -143971754 + L1M4b LINE L1 132 471 -6388 1539 182 66 31 chr1 98692601 98693208 -143971145 - LTR8 LTR ERV1 -2 689 1 582 133 17 75 chr1 98693348 98693468 -143970885 + L1M4b LINE L1 672 784 -6075 429 263 30 83 chr1 98693482 98693782 -143970571 + L1M4b LINE L1 2418 2701 -4437 887 224 11 83 chr1 98694127 98694573 -143969780 + L1M4b LINE L1 3851 4264 -2693 316 288 54 36 chr1 98695094 98695205 -143969148 - L2 LINE L2 -35 3237 3125 2103 200 91 7 chr1 98695464 98696035 -143968318 + L1MA5 LINE L1 4783 5401 -745 27364 120 22 25 chr1 98696044 98702429 -143961924 + L1PA8 LINE L1 6 6467 -20 3675 153 47 10 chr1 98702427 98702689 -143961664 + L1MA5 LINE L1 5397 5648 -652 * 1057 160 10 19 chr1 98702689 98702889 -143961464 + L1PA15 LINE L1 5959 6162 -3 3675 153 47 10 chr1 98702889 98703399 -143960954 + L1MA5 LINE L1 5648 6197 -103 648 144 0 0 chr1 98703844 98703955 -143960398 + L1MA5 LINE L1 6189 6299 -1 6312 112 35 14 chr1 98704129 98705164 -143959189 + MER11C LTR ERVK 1 1057 -14 635 181 24 0 chr1 98705461 98705588 -143958765 - L1MB2 LINE L1 -21 6150 6021 618 298 60 12 chr1 98706898 98707297 -143957056 + L1ME3A LINE L1 5720 6154 -8 375 222 134 23 chr1 98707312 98707483 -143956870 + L1ME3A LINE L1 4403 4592 -1554 365 307 75 30 chr1 98707521 98707853 -143956500 + L1ME3A LINE L1 4882 5228 -918 709 263 33 51 chr1 98707895 98708230 -143956123 + L1ME3A LINE L1 5317 5645 -525 266 236 27 36 chr1 98708281 98708365 -143955988 + L1ME3A LINE L1 5864 5947 -223 2056 118 0 4 chr1 98708365 98708645 -143955708 + AluSg SINE Alu 1 279 -31 244 68 23 23 chr1 98708648 98708692 -143955661 + (CAA)n Simple_repeat Simple_repeat 2 45 0 266 236 27 36 chr1 98708692 98708713 -143955640 + L1ME3A LINE L1 5949 5972 -198 347 247 22 11 chr1 98708818 98708907 -143955446 - L2 LINE L2 -1317 1997 1908 642 282 93 93 chr1 98708907 98709414 -143954939 - L2 LINE L2 -2418 896 390 255 293 181 0 chr1 98709432 98709565 -143954788 + MIR SINE MIR 62 218 -44 2191 160 18 12 chr1 98709821 98710222 -143954131 + L1PA15 LINE L1 5763 6165 0 194 388 16 41 chr1 98710313 98710434 -143953919 - L2 LINE L2 -2804 510 393 7203 158 27 9 chr1 98710730 98712057 -143952296 - HERVK LTR ERVK -530 5852 3538 6704 105 4 6 chr1 98712096 98713067 -143951286 - HERVK LTR ERVK -1782 5461 4493 951 148 19 0 chr1 98713048 98713210 -143951143 + HERVKC4 LTR ERVK 3573 3737 -1525 * 1364 138 14 0 chr1 98713211 98713428 -143950925 - L1P3 LINE L1 -6232 229 10 998 144 6 0 chr1 98714083 98714264 -143950089 - L1MA4 LINE L1 0 6300 6119 198 326 35 0 chr1 98714832 98714918 -143949435 - MIR SINE MIR -126 136 48 23 33 0 0 chr1 98715078 98715108 -143949245 + AT_rich Low_complexity Low_complexity 1 30 0 777 60 0 0 chr1 98715641 98715741 -143948612 - L1PA8 LINE L1 -4 6168 6069 1414 30 0 0 chr1 98715741 98715910 -143948443 - L1P3 LINE L1 -370 5802 5634 1538 258 105 47 chr1 98715947 98716216 -143948137 + L1M4c LINE L1 34 286 -6027 2680 35 0 0 chr1 98716216 98716527 -143947826 - AluY SINE Alu 0 311 1 1538 258 105 47 chr1 98716527 98717096 -143947257 + L1M4c LINE L1 286 790 -5523 313 282 86 20 chr1 98717213 98717458 -143946895 + L1M4c LINE L1 2053 2313 -4069 1464 151 18 97 chr1 98717465 98717557 -143946796 + Tigger2 DNA MER2_type 2413 2511 -207 1492 208 18 4 chr1 98717557 98717831 -143946522 - AluJo SINE Alu -30 282 5 1464 151 18 97 chr1 98717831 98718069 -143946284 + Tigger2 DNA MER2_type 2511 2717 -1 12021 193 24 36 chr1 98718069 98719986 -143944367 + L1MA7 LINE L1 2685 4531 -1996 207 114 0 0 chr1 98719986 98720021 -143944332 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 12021 193 24 36 chr1 98720021 98721993 -143942360 + L1MA7 LINE L1 4531 6525 -2 358 285 112 64 chr1 98722073 98722225 -143942128 - L1M4 LINE L1 -1293 4853 4710 2240 109 42 28 chr1 98722225 98722584 -143941769 + THE1B LTR MaLR 1 364 0 358 285 112 64 chr1 98722584 98722869 -143941484 - L1M4 LINE L1 -1436 4710 4395 752 264 35 35 chr1 98723141 98723395 -143940958 + MER89-int LTR ERV1 446 699 -6102 1179 177 35 17 chr1 98723412 98723644 -143940709 - LTR58 LTR ERV1 0 679 444 1008 223 49 64 chr1 98723681 98724027 -143940326 + MER89-int LTR ERV1 819 1159 -5642 455 153 0 0 chr1 98724097 98724169 -143940184 + LTR44 LTR ERV1 25 96 -423 852 173 32 54 chr1 98724170 98724355 -143939998 + LTR44 LTR ERV1 339 519 0 757 237 28 23 chr1 98724355 98724532 -143939821 + MER89-int LTR ERV1 1180 1357 -5444 1016 236 66 32 chr1 98724533 98724880 -143939473 + MLT1A2 LTR MaLR 1 359 -15 1702 148 35 38 chr1 98724883 98725227 -143939126 - MER61A LTR ERV1 0 343 1 4082 203 40 73 chr1 98725255 98726365 -143937988 + MER89-int LTR ERV1 1355 2428 -4373 2003 144 3 0 chr1 98727198 98727490 -143936863 + AluSx SINE Alu 1 293 -19 239 0 32 0 chr1 98727490 98727521 -143936832 + (TA)n Simple_repeat Simple_repeat 2 33 0 264 263 42 85 chr1 98727524 98727642 -143936711 - MIR SINE MIR -17 245 133 2383 48 14 3 chr1 98727787 98728077 -143936276 + AluY SINE Alu 1 293 -18 245 350 68 19 chr1 98731259 98731362 -143932991 + LTR67 LTR ERVL 58 165 -392 2264 100 3 0 chr1 98733492 98733791 -143930562 - AluSp SINE Alu -13 300 1 186 264 124 33 chr1 98733928 98734049 -143930304 + MIR SINE MIR 97 228 -34 3192 78 46 65 chr1 98734911 98735450 -143928903 + L1PB1 LINE L1 5620 6148 -3 1838 184 9 0 chr1 98735467 98735809 -143928544 + L1 LINE L1 3704 4048 -2098 1565 100 14 93 chr1 98735945 98736234 -143928119 + L1MA2 LINE L1 6025 6290 -14 388 232 89 27 chr1 98736278 98736390 -143927963 + MIR SINE MIR 144 262 0 345 204 58 48 chr1 98736437 98736540 -143927813 + L2 LINE L2 3210 3313 0 292 305 152 33 chr1 98737281 98737491 -143926862 + MIR SINE MIR 13 247 -15 24 0 0 0 chr1 98737871 98737895 -143926458 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 98738932 98738953 -143925400 + AT_rich Low_complexity Low_complexity 1 21 0 438 236 38 0 chr1 98739036 98739142 -143925211 - MER81 DNA DNA 0 114 5 629 361 48 47 chr1 98739165 98739896 -143924457 + L2 LINE L2 2169 2900 -414 1401 206 4 29 chr1 98739909 98740190 -143924163 - AluJo SINE Alu -28 284 11 24 0 0 0 chr1 98740299 98740323 -143924030 + AT_rich Low_complexity Low_complexity 1 24 0 1738 166 0 3 chr1 98740324 98740607 -143923746 - AluJb SINE Alu -30 282 1 1546 296 77 94 chr1 98742115 98743614 -143920739 - L2 LINE L2 0 3313 1839 969 302 150 38 chr1 98743618 98744271 -143920082 - L2 LINE L2 -2487 827 102 212 300 122 11 chr1 98744567 98744657 -143919696 + MIR SINE MIR 41 140 -122 26 30 0 0 chr1 98745203 98745236 -143919117 + AT_rich Low_complexity Low_complexity 1 33 0 5916 219 84 80 chr1 98746379 98748640 -143915713 - L1MC4a LINE L1 -2 7806 5535 21 0 0 0 chr1 98750770 98750791 -143913562 + AT_rich Low_complexity Low_complexity 1 21 0 1208 223 89 0 chr1 98750881 98751037 -143913316 - AluJo SINE Alu -5 297 156 231 114 0 0 chr1 98751037 98751072 -143913281 + (TG)n Simple_repeat Simple_repeat 1 35 0 1208 223 89 0 chr1 98751072 98751184 -143913169 - AluJo SINE Alu -146 156 5 4744 140 100 131 chr1 98751308 98752896 -143911457 - pTR5 LTR ERV1 0 2438 743 227 287 88 44 chr1 98752947 98753083 -143911270 - MIR SINE MIR -21 241 100 207 0 0 0 chr1 98753241 98753264 -143911089 + (TG)n Simple_repeat Simple_repeat 1 23 0 233 331 109 3 chr1 98754960 98755107 -143909246 + MIR SINE MIR 30 191 -68 769 289 83 37 chr1 98755353 98755861 -143908492 - L1MC4a LINE L1 -1904 5904 5374 2902 279 32 36 chr1 98757574 98758711 -143905642 + L1PA15 LINE L1 5 1570 -5217 15469 235 29 18 chr1 98758893 98762640 -143901713 + L1PA15 LINE L1 1650 5453 -1344 189 0 0 0 chr1 98762640 98762661 -143901692 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 15469 235 29 18 chr1 98762661 98763264 -143901089 + L1PA15 LINE L1 5453 6048 -749 6451 114 8 24 chr1 98763266 98764656 -143899697 + L1PA4 LINE L1 4781 6155 0 4731 135 9 1 chr1 98764668 98765415 -143898938 + L1PA15 LINE L1 6064 6816 0 22 0 0 0 chr1 98766277 98766299 -143898054 + AT_rich Low_complexity Low_complexity 1 22 0 1276 209 45 14 chr1 98766461 98766748 -143897605 - AluJo SINE Alu -16 296 1 316 100 80 0 chr1 98767009 98767059 -143897294 - MSTA LTR MaLR 0 428 375 1041 270 97 8 chr1 98767065 98767406 -143896947 - L1ME3A LINE L1 -325 5845 5474 217 274 78 0 chr1 98767416 98767467 -143896886 - MIR SINE MIR -60 148 94 25 31 0 0 chr1 98767711 98767743 -143896610 + AT_rich Low_complexity Low_complexity 1 32 0 1734 164 114 12 chr1 98767748 98768089 -143896264 - MSTA LTR MaLR -45 383 8 3888 154 9 14 chr1 98768098 98768766 -143895587 - L1PA16 LINE L1 -33 6133 5469 2997 172 24 66 chr1 98768786 98769150 -143895203 - L1MA9 LINE L1 -1 6311 5990 2349 98 0 0 chr1 98769150 98769447 -143894906 - AluSc SINE Alu -12 297 1 2997 172 24 66 chr1 98769447 98769790 -143894563 - L1MA9 LINE L1 -322 5990 5634 * 4013 185 50 38 chr1 98769789 98771099 -143893254 + L1M2 LINE L1 4249 5597 -715 335 320 74 23 chr1 98771147 98771322 -143893031 + MIR SINE MIR 62 245 -17 285 296 96 52 chr1 98772068 98772183 -143892170 + MIR3 SINE MIR 5 124 -84 295 252 178 0 chr1 98772554 98772661 -143891692 + MLT1E2 LTR MaLR 16 141 -513 449 213 115 25 chr1 98772736 98772858 -143891495 + MLT1E2 LTR MaLR 160 292 -334 423 297 8 0 chr1 98772859 98772977 -143891376 + MLT1E2 LTR MaLR 435 553 -73 21 0 0 0 chr1 98773027 98773048 -143891305 + AT_rich Low_complexity Low_complexity 1 21 0 564 173 137 7 chr1 98773118 98773257 -143891096 - L1MA8 LINE L1 -66 6225 6069 371 338 91 0 chr1 98774112 98774266 -143890087 - MER45A DNA AcHobo -10 168 1 1538 233 19 12 chr1 98775129 98775541 -143888812 - L1MA9 LINE L1 -33 6279 5865 1725 196 73 2 chr1 98776987 98777385 -143886968 + MER95 LTR ERV 6 431 0 237 231 0 0 chr1 98777424 98777476 -143886877 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 1974 155 24 0 chr1 98778545 98778841 -143885512 - AluSx SINE Alu -9 303 1 243 0 0 0 chr1 98778899 98778926 -143885427 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 29 0 0 0 chr1 98778986 98779015 -143885338 + AT_rich Low_complexity Low_complexity 1 29 0 36095 67 3 4 chr1 98779017 98784568 -143879785 + L1PA5 LINE L1 606 6149 -5 1001 233 38 0 chr1 98784620 98784856 -143879497 + MIR SINE MIR 8 252 -10 11138 138 27 15 chr1 98785020 98787830 -143876523 - L1PA13 LINE L1 -44 6119 3275 198 103 0 0 chr1 98788027 98788056 -143876297 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2149 129 0 0 chr1 98788058 98788369 -143875984 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 98788695 98788716 -143875637 + AT_rich Low_complexity Low_complexity 1 21 0 1223 195 41 105 chr1 98789314 98789419 -143874934 + MLT1A1 LTR MaLR 1 111 -254 2194 112 3 10 chr1 98789419 98789724 -143874629 + AluSc SINE Alu 1 303 -6 1223 195 41 105 chr1 98789724 98789796 -143874557 + MLT1A1 LTR MaLR 111 186 -179 2448 76 6 3 chr1 98789796 98790125 -143874228 + L1PA7 LINE L1 5820 6149 -5 1223 195 41 105 chr1 98790125 98790336 -143874017 + MLT1A1 LTR MaLR 186 365 0 354 253 211 26 chr1 98790812 98791006 -143873347 + MER65A LTR ERV1 1 230 -215 324 291 93 61 chr1 98791345 98791623 -143872730 + MER65B-int LTR ERV1 27 313 -4558 192 40 0 0 chr1 98791624 98791649 -143872704 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 365 277 11 57 chr1 98791863 98792040 -143872313 - MER54B LTR ERVL -547 246 78 513 250 19 91 chr1 98792040 98792248 -143872105 + MER65B-int LTR ERV1 662 854 -4017 1079 197 53 116 chr1 98792441 98792853 -143871500 + MER65B-int LTR ERV1 1178 1615 -4306 2299 69 0 10 chr1 98792853 98792982 -143871371 + AluSp SINE Alu 1 130 -183 288 0 0 0 chr1 98792982 98793014 -143871339 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2299 69 0 10 chr1 98793014 98793172 -143871181 + AluSp SINE Alu 130 285 -28 186 71 0 0 chr1 98793176 98793204 -143871149 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1079 197 53 116 chr1 98793204 98793528 -143870825 + MER65B-int LTR ERV1 1618 2843 -3078 2455 233 42 53 chr1 98793533 98794263 -143870090 + MER65B-int LTR ERV1 3452 4173 -698 1256 291 36 9 chr1 98794438 98794858 -143869495 + MER65B-int LTR ERV1 4440 4870 -1 560 234 39 19 chr1 98794859 98795013 -143869340 + MER65B LTR ERV1 1 157 -374 35 54 0 0 chr1 98795676 98795732 -143868621 + AT_rich Low_complexity Low_complexity 1 56 0 6713 219 62 52 chr1 98796327 98798574 -143865779 - L1MC4a LINE L1 -7 7801 5534 232 290 0 0 chr1 98799567 98799629 -143864724 + L1MC4a LINE L1 5985 6046 -1762 193 366 97 0 chr1 98800662 98800755 -143863598 + L2 LINE L2 3152 3253 -19 186 279 162 15 chr1 98800837 98800905 -143863448 - MIR SINE MIR -148 114 37 186 293 49 98 chr1 98800992 98801156 -143863197 - MIR SINE MIR -55 207 52 200 283 0 17 chr1 98801210 98801270 -143863083 + GA-rich Low_complexity Low_complexity 2 60 0 2209 116 3 0 chr1 98801499 98801793 -143862560 - AluSp SINE Alu -18 295 1 908 237 125 9 chr1 98801801 98802111 -143862242 + LTR68 LTR ERV1 81 584 -156 1991 128 3 7 chr1 98802248 98802536 -143861817 + AluSx SINE Alu 2 288 -24 4584 108 25 31 chr1 98802564 98803363 -143860990 + MER51B-int LTR ERV1 1852 2645 -2572 2364 144 0 0 chr1 98803409 98803762 -143860591 + MER51B-int LTR ERV1 7464 7816 0 1887 83 12 2 chr1 98803763 98804080 -143860273 + MER51B LTR ERV1 1 377 0 290 307 73 0 chr1 98805070 98805207 -143859146 - L1MC4a LINE L1 -1892 5916 5770 442 184 11 43 chr1 98805226 98805312 -143859041 + (TA)n Simple_repeat Simple_repeat 2 89 -91 2562 88 128 8 chr1 98805312 98805712 -143858641 - LTR7 LTR ERV1 -2 448 1 442 184 11 43 chr1 98805712 98805810 -143858543 + (TA)n Simple_repeat Simple_repeat 89 180 0 731 240 0 0 chr1 98806059 98806251 -143858102 + L1PA15 LINE L1 4342 4533 -1613 3806 59 16 22 chr1 98806365 98806687 -143857666 - LTR2B LTR ERV1 0 490 171 2442 32 4 0 chr1 98806687 98806966 -143857387 - AluY SINE Alu -11 300 21 3806 59 16 22 chr1 98806966 98807136 -143857217 - LTR2B LTR ERV1 -319 171 1 5219 127 36 19 chr1 98807201 98807804 -143856549 + L1PA15 LINE L1 4577 5168 -997 1619 201 7 7 chr1 98807804 98808108 -143856245 + AluJb SINE Alu 1 304 -8 5219 127 36 19 chr1 98808108 98809079 -143855274 + L1PA15 LINE L1 5168 6164 -1 400 192 39 0 chr1 98811007 98811111 -143853242 - L1MA9 LINE L1 -188 6124 6017 1487 173 30 48 chr1 98811635 98812147 -143852206 + L1M2 LINE L1 5089 5596 -716 389 298 47 11 chr1 98812168 98812342 -143852011 + MIR SINE MIR 34 212 -50 195 69 0 0 chr1 98812361 98812390 -143851963 + (CAT)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr1 98812535 98812558 -143851795 + AT_rich Low_complexity Low_complexity 1 23 0 349 329 81 6 chr1 98813090 98813251 -143851102 + MIR3 SINE MIR 5 177 -31 461 183 158 9 chr1 98813604 98813885 -143850468 + MLT1E2 LTR MaLR 1 291 -335 * 751 248 15 10 chr1 98813869 98814067 -143850286 + MLT1E2 LTR MaLR 420 618 -8 312 263 40 0 chr1 98814957 98815056 -143849297 - MER45 DNA AcHobo -1478 103 1 25 0 0 0 chr1 98815143 98815168 -143849185 + AT_rich Low_complexity Low_complexity 1 25 0 192 213 0 43 chr1 98816353 98816400 -143847953 + L2 LINE L2 3228 3272 0 198 0 0 0 chr1 98817655 98817677 -143846676 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 252 333 61 34 chr1 98817947 98818094 -143846259 - L2 LINE L2 0 3272 3122 391 303 114 31 chr1 98819958 98820575 -143843778 + L1ME3A LINE L1 5279 5957 -207 247 250 93 0 chr1 98820706 98820814 -143843539 + L1ME3A LINE L1 6038 6155 -15 337 360 101 0 chr1 98820944 98821211 -143843142 - L2 LINE L2 -1604 1710 1417 474 219 21 94 chr1 98821948 98822066 -143842287 - L2 LINE L2 -2 3311 3211 3626 107 27 18 chr1 98822066 98822625 -143841728 - LTR6A LTR ERV1 0 564 1 474 219 21 94 chr1 98822625 98822698 -143841655 - L2 LINE L2 -102 3211 3134 202 286 0 0 chr1 98823392 98823462 -143840891 + T-rich Low_complexity Low_complexity 1 70 0 207 100 0 0 chr1 98824022 98824052 -143840301 + (A)n Simple_repeat Simple_repeat 1 30 0 1714 169 0 36 chr1 98824181 98824482 -143839871 + AluJb SINE Alu 1 290 -22 1329 202 26 83 chr1 98825301 98825688 -143838665 - MLT1A1 LTR MaLR 0 365 1 266 339 69 8 chr1 98826181 98826311 -143838042 - MER45A DNA AcHobo -35 143 6 239 224 35 0 chr1 98826345 98826403 -143837950 + T-rich Low_complexity Low_complexity 3 62 0 306 378 187 5 chr1 98826755 98826964 -143837389 + L2 LINE L2 3016 3262 -10 1841 141 176 16 chr1 98828177 98828546 -143835807 + MSTA LTR MaLR 1 428 0 8953 135 17 42 chr1 98828548 98830082 -143834271 + MSTA-int LTR MaLR 3 1496 -84 3470 34 10 0 chr1 98830082 98830518 -143833835 + L1PA4 LINE L1 5717 6156 0 8953 135 17 42 chr1 98830518 98830601 -143833752 + MSTA-int LTR MaLR 1496 1580 0 1728 158 174 11 chr1 98830601 98830969 -143833384 + MSTA LTR MaLR 1 428 0 763 297 95 23 chr1 98831299 98831774 -143832579 - MLT1J LTR MaLR 0 511 3 256 221 90 41 chr1 98833050 98833195 -143831158 + L2 LINE L2 3004 3155 -158 495 128 47 0 chr1 98833456 98833542 -143830811 - LOR1a LTR ERV1 0 497 408 473 160 0 0 chr1 98833548 98833623 -143830730 + LOR1a LTR ERV1 423 497 0 5749 126 51 30 chr1 98833623 98834688 -143829665 + LOR1a-int LTR ERV1 1 1087 -7033 * 24591 105 34 18 chr1 98834671 98835782 -143828571 + LOR1a-int LTR ERV1 1269 2361 -5759 2382 95 0 0 chr1 98835782 98836078 -143828275 - AluY SINE Alu -15 296 1 24591 105 34 18 chr1 98836078 98839157 -143825196 + LOR1a-int LTR ERV1 2361 5524 -2596 1639 138 7 7 chr1 98839147 98839422 -143824931 + LOR1a-int LTR ERV1 5801 6075 -2045 * 652 89 0 0 chr1 98839413 98839503 -143824850 + LOR1b-int LTR ERV1 8031 8120 0 * 2224 168 41 0 chr1 98839503 98839920 -143824433 + LOR1b LTR ERV1 1 434 -27 298 250 74 46 chr1 98839942 98840050 -143824303 + MIR SINE MIR 23 133 -129 5643 75 13 29 chr1 98840267 98841107 -143823246 - L1PA8A LINE L1 -1 6130 5304 2269 199 34 2 chr1 98842114 98842561 -143821792 - LOR1b LTR ERV1 0 461 1 1422 94 67 5 chr1 98842689 98842912 -143821441 - LTR12 LTR ERV1 0 714 478 341 245 0 10 chr1 98842928 98843030 -143821323 - LTR30 LTR ERV1 -98 624 524 1397 114 124 0 chr1 98843030 98843384 -143820969 - LTR12 LTR ERV1 -456 1683 57 3380 82 16 12 chr1 98843774 98844259 -143820094 - LTR15 LTR ERV1 -6 487 1 238 254 0 15 chr1 98844569 98844636 -143819717 + CT-rich Low_complexity Low_complexity 1 66 0 5746 271 21 9 chr1 98846188 98848150 -143816203 + L1P LINE L1 1670 3656 -2490 4186 100 44 2 chr1 98848161 98848779 -143815574 - L1PA10 LINE L1 -5 6163 5520 5701 75 3 0 chr1 98848779 98849556 -143814797 - L1PA6 LINE L1 0 6154 5376 2976 81 0 24 chr1 98849549 98850005 -143814348 - L1PA6 LINE L1 -2095 4051 3607 * 7576 64 13 13 chr1 98849999 98851103 -143813250 - L1PA10 LINE L1 -756 5390 4287 * 23504 114 18 12 chr1 98851099 98854953 -143809400 - L1PA10 LINE L1 -2261 3885 11 22862 179 26 20 chr1 98854965 98859496 -143804857 - L1PA8A LINE L1 -600 5846 1254 324 0 0 0 chr1 98859496 98859532 -143804821 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22862 179 26 20 chr1 98859532 98860785 -143803568 - L1PA8A LINE L1 -5192 1254 10 379 192 45 11 chr1 98860797 98860903 -143803450 + L1P LINE L1 3645 3754 -2392 2022 110 3 21 chr1 98861078 98861396 -143802957 + AluSg SINE Alu 5 310 0 195 209 23 0 chr1 98862359 98862402 -143801951 - L2 LINE L2 0 3272 3229 298 200 14 0 chr1 98863078 98863148 -143801205 - L1P4 LINE L1 -669 5497 5427 * 6279 239 25 13 chr1 98863144 98864924 -143799429 - L1P4 LINE L1 -1280 4866 3065 529 214 21 14 chr1 98864917 98865057 -143799296 - L1P4 LINE L1 -3900 2246 2106 * 4720 238 11 20 chr1 98865058 98865798 -143798555 - L1PA15-16 LINE L1 -3071 3726 2981 2595 138 16 16 chr1 98865798 98866226 -143798127 + MSTA LTR MaLR 1 428 0 4720 238 11 20 chr1 98866226 98866351 -143798002 - L1PA15-16 LINE L1 -3816 2981 2856 2455 95 0 0 chr1 98866351 98866657 -143797696 - AluY SINE Alu -5 306 1 4720 238 11 20 chr1 98866657 98867546 -143796807 - L1PA15-16 LINE L1 -3941 2856 1978 6769 69 0 2 chr1 98867548 98868683 -143795670 - L1PA6 LINE L1 -8 6146 5007 2397 97 3 0 chr1 98868694 98868994 -143795359 + AluY SINE Alu 1 301 -10 22811 66 2 7 chr1 98868997 98872202 -143792151 + L1P LINE L1 1813 5002 -1144 351 227 10 0 chr1 98872195 98872292 -143792061 - L1PA15-16 LINE L1 -4809 1978 1881 * 16164 168 28 9 chr1 98872322 98877861 -143786492 + L1MA2 LINE L1 547 6241 -1482 2140 60 3 21 chr1 98877861 98878178 -143786175 + AluY SINE Alu 1 312 0 16164 168 28 9 chr1 98878178 98879690 -143784663 + L1MA2 LINE L1 6241 7723 0 22 0 0 0 chr1 98879690 98879712 -143784641 + AT_rich Low_complexity Low_complexity 1 22 0 2184 136 0 0 chr1 98879805 98880113 -143784240 + AluSx SINE Alu 4 311 -1 434 259 164 0 chr1 98880113 98880333 -143784020 + L1ME3A LINE L1 5693 5948 -222 358 298 40 49 chr1 98880684 98880909 -143783444 - L1M4 LINE L1 -1038 5108 4886 2314 144 11 3 chr1 98881137 98881498 -143782855 - THE1B LTR MaLR 0 364 1 210 274 12 12 chr1 98881600 98881684 -143782669 + (TAA)n Simple_repeat Simple_repeat 1 84 0 917 176 68 0 chr1 98881813 98881989 -143782364 - MLT1D LTR MaLR 0 505 318 473 176 33 35 chr1 98883896 98884040 -143780313 + LTR21B LTR ERV1 326 438 0 1599 179 48 27 chr1 98884067 98884397 -143779956 - MER1B DNA MER1_type 0 337 1 21 36 0 0 chr1 98884635 98884663 -143779690 + AT_rich Low_complexity Low_complexity 1 28 0 409 281 76 23 chr1 98885534 98885705 -143778648 + MIR SINE MIR 62 241 -21 896 246 50 0 chr1 98885951 98886171 -143778182 - MIR SINE MIR -9 253 23 447 329 13 48 chr1 98887189 98887502 -143776851 + MLT1K LTR MaLR 277 578 -10 27 0 0 0 chr1 98889409 98889436 -143774917 + AT_rich Low_complexity Low_complexity 1 27 0 2191 71 0 0 chr1 98889529 98889797 -143774556 + AluY SINE Alu 38 305 -6 220 294 153 12 chr1 98890033 98890118 -143774235 + L2 LINE L2 3173 3269 -3 27 29 0 0 chr1 98890850 98890884 -143773469 + AT_rich Low_complexity Low_complexity 1 34 0 298 304 0 29 chr1 98891903 98892005 -143772348 - MIR SINE MIR -52 210 112 795 217 38 52 chr1 98892099 98892311 -143772042 - MER63A DNA MER1_type 0 210 2 189 329 49 0 chr1 98895327 98895409 -143768944 + MIR SINE MIR 45 130 -78 4391 111 293 112 chr1 98896499 98897935 -143766418 - pTR5 LTR ERV1 0 2438 743 2425 83 0 6 chr1 98898001 98898314 -143766039 + AluY SINE Alu 1 311 0 425 317 134 11 chr1 98898975 98899161 -143765192 - MIR SINE MIR -13 249 41 695 311 31 16 chr1 98899365 98899683 -143764670 - LTR16C LTR ERVL -35 456 134 189 0 0 0 chr1 98899883 98899904 -143764449 + (CA)n Simple_repeat Simple_repeat 2 22 0 543 312 61 49 chr1 98899920 98900414 -143763939 - ERVL LTR ERVL -384 5380 4881 726 322 60 42 chr1 98900580 98901062 -143763291 - ERVL LTR ERVL -1120 4644 4154 885 220 0 0 chr1 98901454 98901640 -143762713 + L1PB4 LINE L1 5968 6153 -3 254 335 11 80 chr1 98902124 98902312 -143762041 + LTR16C LTR ERVL 317 491 0 848 255 18 102 chr1 98902609 98902993 -143761360 + MLT1H1 LTR MaLR 204 555 0 1585 245 5 24 chr1 98903287 98903659 -143760694 + MLT1A1 LTR MaLR 1 365 0 919 104 0 0 chr1 98903683 98903818 -143760535 + L1PB1 LINE L1 6012 6146 -5 315 345 59 48 chr1 98904305 98904595 -143759758 + LTR16C LTR ERVL 199 491 0 272 97 75 0 chr1 98904762 98904855 -143759498 + (TA)n Simple_repeat Simple_repeat 1 100 0 761 303 132 26 chr1 98904864 98905585 -143758768 + L2 LINE L2 2520 3312 -1 2051 143 73 12 chr1 98906045 98906388 -143757965 - THE1B LTR MaLR 0 364 1 240 255 28 19 chr1 98906559 98906665 -143757688 + HAL1 LINE L1 1198 1304 -1203 2104 123 0 0 chr1 98906821 98907134 -143757219 - AluSx SINE Alu 0 313 1 10204 92 6 1 chr1 98907821 98909251 -143755102 + THE1B-int LTR MaLR 132 1569 -11 1431 110 68 38 chr1 98909261 98909524 -143754829 + THE1B LTR MaLR 1 271 -93 1164 217 54 87 chr1 98909546 98909993 -143754360 - MSTB1 LTR MaLR 0 432 1 454 327 149 32 chr1 98911443 98912029 -143752324 + L2 LINE L2 2661 3312 -1 1715 211 58 5 chr1 98912557 98912955 -143751398 - MLT1A1-int LTR MaLR -1 1370 952 2293 207 109 18 chr1 98913045 98913615 -143750738 - MLT1A1-int LTR MaLR -393 978 357 25 0 0 0 chr1 98913615 98913640 -143750713 + AT_rich Low_complexity Low_complexity 1 25 0 663 130 17 9 chr1 98914401 98914516 -143749837 - L1PA4 LINE L1 -227 5928 5813 655 191 40 8 chr1 98914519 98914645 -143749708 - FLAM_C SINE Alu -3 130 1 249 200 0 17 chr1 98914647 98914707 -143749646 - MLT1A1-int LTR MaLR -1391 344 286 1754 200 38 5 chr1 98914908 98915303 -143749050 - MLT2C2 LTR ERVL -48 416 9 243 288 0 0 chr1 98915323 98915403 -143748950 - MER70B LTR ERVL -17 561 482 1429 288 52 14 chr1 98916665 98917148 -143747205 - MER70-int LTR ERVL -1494 3529 3029 2614 97 17 6 chr1 98917171 98917531 -143746822 - THE1B LTR MaLR 0 364 1 417 312 45 41 chr1 98918323 98918592 -143745761 - MER70-int LTR ERVL -2485 2538 2269 11806 138 33 6 chr1 98919414 98921728 -143742625 + L1PA8A LINE L1 3157 5531 -600 23285 105 8 12 chr1 98921740 98925412 -143738941 + L1P LINE L1 11 3668 -2478 27279 44 3 3 chr1 98975415 98976232 -143688121 + L1PA4 LINE L1 2023 2839 -3316 2815 16 0 0 chr1 98976232 98976538 -143687815 + AluYa5 SINE Alu 1 306 -5 27279 44 3 3 chr1 98976538 98979858 -143684495 + L1PA4 LINE L1 2839 6155 0 381 22 0 0 chr1 98980072 98980118 -143684235 + (TG)n Simple_repeat Simple_repeat 2 47 0 213 300 69 62 chr1 98980919 98981049 -143683304 - MIR SINE MIR -120 142 12 2090 88 7 11 chr1 98981776 98982087 -143682266 + AluY SINE Alu 1 310 0 524 259 70 32 chr1 98982089 98982274 -143682079 - MIR SINE MIR -6 256 65 1995 171 40 17 chr1 98982380 98982732 -143681621 - MLT1A1 LTR MaLR -3 362 3 1926 177 13 47 chr1 98983161 98983545 -143680808 - MER73 LTR ERVL -268 376 6 1398 215 18 7 chr1 98983549 98983828 -143680525 + L1M1 LINE L1 16 297 -7268 1931 200 15 0 chr1 98983833 98984158 -143680195 + L1M1 LINE L1 1535 1864 -5701 2744 89 17 0 chr1 98984209 98984558 -143679795 + THE1A LTR MaLR 1 355 0 12414 94 3 6 chr1 98984558 98986143 -143678210 + THE1A-int LTR MaLR 1 1580 0 1628 85 9 0 chr1 98986143 98986355 -143677998 + THE1A LTR MaLR 1 214 -141 31469 165 18 17 chr1 98986436 98992212 -143672141 + HUERS-P2 LTR ERV1 627 6603 -417 2151 133 9 12 chr1 98992233 98992557 -143671796 + HUERS-P2 LTR ERV1 2766 3088 0 4132 169 111 5 chr1 98992557 98993304 -143671049 + LTR1B LTR ERV1 1 826 0 20353 87 9 8 chr1 98993304 98996805 -143667548 + HERVL LTR ERVL 1944 5550 -104 302 288 51 37 chr1 98996952 98997142 -143667211 + MIR SINE MIR 54 251 -11 254 286 100 0 chr1 98997315 98997385 -143666968 - MIR SINE MIR -171 91 15 2921 44 15 3 chr1 98997732 98998073 -143666280 - L1PA3 LINE L1 -5 6150 5806 5967 38 0 0 chr1 98998074 98998788 -143665565 + L1P LINE L1 3193 3906 -2240 1806 239 110 47 chr1 98998939 98999621 -143664732 + MER50 LTR ERV1 10 734 0 1826 209 158 5 chr1 98999656 99000092 -143664261 - MLT1D LTR MaLR 0 505 3 619 229 20 13 chr1 99000193 99000346 -143664007 + MIR SINE MIR 1 154 -108 24 53 0 0 chr1 99000824 99000862 -143663491 + AT_rich Low_complexity Low_complexity 1 38 0 247 385 67 0 chr1 99001818 99001922 -143662431 + L2 LINE L2 3155 3265 -7 2490 182 33 0 chr1 99002402 99002857 -143661496 - L1MC1 LINE L1 0 6333 5864 234 206 0 0 chr1 99003066 99003129 -143661224 + CT-rich Low_complexity Low_complexity 2 64 0 489 264 48 81 chr1 99003738 99004275 -143660078 - L1MC5 LINE L1 -10 8032 7492 774 308 28 42 chr1 99004352 99004713 -143659640 - L1MC4 LINE L1 -1012 7030 6675 281 224 64 40 chr1 99004808 99004933 -143659420 - MER90 LTR ERV1 -46 529 402 668 206 75 0 chr1 99005234 99005394 -143658959 - L1MA10 LINE L1 -1 6333 6162 857 199 68 14 chr1 99005558 99005783 -143658570 - L1M3 LINE L1 -598 5573 5337 * 987 151 6 0 chr1 99005761 99005933 -143658420 - L1M3 LINE L1 -1314 4832 4660 1590 192 25 6 chr1 99005983 99006301 -143658052 + MER74A LTR ERVL 4 327 -231 454 267 29 70 chr1 99006349 99006521 -143657832 + MER5B DNA MER1_type 14 178 0 2351 70 0 17 chr1 99006798 99007099 -143657254 - AluY SINE Alu -15 296 1 714 192 160 0 chr1 99007449 99007605 -143656748 + MER1B DNA MER1_type 1 181 -116 975 141 20 0 chr1 99007605 99007771 -143656582 - L1PB4 LINE L1 -188 5968 5799 195 42 0 0 chr1 99007777 99007801 -143656552 + (TC)n Simple_repeat Simple_repeat 2 25 0 318 50 0 0 chr1 99008865 99008905 -143655448 + (TG)n Simple_repeat Simple_repeat 1 40 0 193 238 0 0 chr1 99009093 99009135 -143655218 + MER5A DNA MER1_type 120 161 -28 21 36 0 0 chr1 99009169 99009197 -143655156 + AT_rich Low_complexity Low_complexity 1 28 0 1569 65 4 108 chr1 99009201 99009461 -143654892 - L1PA8 LINE L1 -72 6100 5868 446 50 83 0 chr1 99009457 99009517 -143654836 + L1P LINE L1 5138 5202 -944 * 232 378 36 16 chr1 99010008 99010201 -143654152 - MIR SINE MIR -9 253 57 3729 177 87 31 chr1 99011042 99012073 -143652280 - L1MB3 LINE L1 -12 6171 5082 433 327 71 52 chr1 99013274 99013751 -143650602 + L2 LINE L2 1528 2013 -1301 518 256 57 6 chr1 99014354 99014530 -143649823 - LTR16A LTR ERVL -102 348 164 2396 154 13 70 chr1 99015003 99015547 -143648806 - L1MA9 LINE L1 -1 6311 5799 15204 40 0 0 chr1 99015547 99018177 -143646176 + L1PA3 LINE L1 3528 6155 0 305 206 48 0 chr1 99018223 99018286 -143646067 + MER77 LTR ERV1 536 601 -4 2006 126 0 46 chr1 99018829 99019131 -143645222 - AluSx SINE Alu -24 288 1 747 311 55 8 chr1 99019400 99019779 -143644574 - HERV16 LTR ERVL -2944 2052 1656 404 291 10 20 chr1 99020582 99020817 -143643536 - L1MC4a LINE L1 -304 5817 5681 2215 107 17 0 chr1 99020949 99021240 -143643113 + AluSx SINE Alu 1 296 -16 258 303 87 27 chr1 99023477 99023662 -143640691 + MIR SINE MIR 67 262 0 23 54 0 0 chr1 99023749 99023786 -143640567 + AT_rich Low_complexity Low_complexity 1 37 0 299 369 0 0 chr1 99024302 99024413 -143639940 + MIR3 SINE MIR 93 203 -5 249 268 0 0 chr1 99025161 99025217 -143639136 + (CA)n Simple_repeat Simple_repeat 1 56 0 1942 136 63 0 chr1 99025493 99025779 -143638574 - AluSx SINE Alu -8 304 1 1629 218 3 3 chr1 99026632 99026926 -143637427 - AluJb SINE Alu -18 294 1 2111 150 90 23 chr1 99027375 99027774 -143636579 + MSTB LTR MaLR 1 426 0 345 187 11 55 chr1 99029939 99030030 -143634323 - FLAM SINE Alu -8 125 39 1818 204 14 10 chr1 99030030 99030447 -143633906 + L1 LINE L1 4610 5028 -1118 2276 165 7 21 chr1 99030448 99030884 -143633469 + L1MA8 LINE L1 5620 6049 -242 459 253 27 7 chr1 99030906 99031056 -143633297 + L1 LINE L1 5030 5182 -964 4372 40 0 0 chr1 99031161 99031717 -143632636 - L1P LINE L1 -1003 5143 4588 1616 268 58 6 chr1 99031719 99032186 -143632167 - MER77 LTR ERV1 -58 547 57 1186 208 17 25 chr1 99032439 99032680 -143631673 - MER8 DNA MER2_type 0 239 1 315 295 68 68 chr1 99033775 99033965 -143630388 - L2 LINE L2 -20 3293 3104 4091 90 36 12 chr1 99034742 99035407 -143628946 + L1M1 LINE L1 2929 3609 -3956 621 58 0 0 chr1 99036758 99036844 -143627509 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 477 155 2 50 chr1 99036844 99036965 -143627388 + L1MDa LINE L1 2580 2695 -3845 868 240 61 40 chr1 99036979 99037354 -143626999 + L1MDa LINE L1 2765 3147 -3393 1638 189 58 2 chr1 99037408 99037859 -143626494 + L1MDa LINE L1 3416 3891 -2649 281 206 15 0 chr1 99038775 99038843 -143625510 + L1MB8 LINE L1 6108 6176 -2 1470 214 92 6 chr1 99039032 99039368 -143624985 + MLT1A1 LTR MaLR 1 365 0 2279 114 0 0 chr1 99039409 99039706 -143624647 + AluSx SINE Alu 1 297 -15 1654 133 0 0 chr1 99040936 99041169 -143623184 + AluSx SINE Alu 1 233 -79 28 0 0 0 chr1 99041236 99041264 -143623089 + AT_rich Low_complexity Low_complexity 1 28 0 306 219 11 0 chr1 99041283 99041372 -143622981 - MLT1A1 LTR MaLR 0 365 305 3461 67 2 17 chr1 99041626 99042091 -143622262 + L1PA8 LINE L1 5701 6158 -14 322 303 33 8 chr1 99042188 99042310 -143622043 - L1M4 LINE L1 -4835 2020 1896 341 239 60 41 chr1 99042316 99042534 -143621819 - L1M4 LINE L1 -5189 1670 1449 643 193 21 0 chr1 99042580 99042720 -143621633 - L1MA6 LINE L1 0 6300 6158 4048 171 20 21 chr1 99042826 99043669 -143620684 - L1MA6 LINE L1 -14 6286 5445 1449 95 9 0 chr1 99043682 99043892 -143620461 - LTR12 LTR ERV1 -23 691 480 304 263 10 0 chr1 99043892 99043991 -143620362 - LTR30 LTR ERV1 -79 643 544 4159 150 76 81 chr1 99043992 99045117 -143619236 - pTR5 LTR ERV1 -414 2024 769 3524 184 30 24 chr1 99045123 99045289 -143619064 - L1MA6 LINE L1 -747 5399 5235 3212 138 24 6 chr1 99045289 99045833 -143618520 - LTR38 LTR ERV1 0 556 3 3524 184 30 24 chr1 99045833 99046545 -143617808 - L1MA6 LINE L1 -911 5235 4557 871 221 64 33 chr1 99046573 99046838 -143617515 + MER39 LTR ERV1 13 432 -275 425 267 28 68 chr1 99046931 99047107 -143617246 + MER5B DNA MER1_type 7 175 -3 413 331 99 21 chr1 99047923 99048207 -143616146 - ERVL LTR ERVL -2553 3211 2906 632 194 32 26 chr1 99048319 99048474 -143615879 + MLT1E LTR MaLR 438 593 0 636 252 43 9 chr1 99048485 99048715 -143615638 - L1ME3A LINE L1 -199 5971 5734 993 287 77 34 chr1 99048727 99049789 -143614564 - L1ME3A LINE L1 -498 5672 4570 321 250 0 0 chr1 99049792 99049864 -143614489 + MSTB LTR MaLR 1 72 -354 935 263 125 0 chr1 99049965 99050349 -143614004 - L1ME LINE L1 -381 5781 5350 356 365 37 28 chr1 99051959 99052173 -143612180 + L2 LINE L2 2653 2868 -446 1880 158 25 36 chr1 99052635 99053078 -143611275 - LTR21B LTR ERV1 0 438 1 370 169 11 79 chr1 99053592 99053681 -143610672 + MER20 DNA MER1_type 1 83 -136 2512 155 5 7 chr1 99053698 99054112 -143610241 - MER61B LTR ERV1 0 425 13 6505 130 17 15 chr1 99054113 99055535 -143608818 - MER61B-int LTR ERV1 0 5217 3755 8595 102 9 24 chr1 99055535 99056839 -143607514 - MER61B-int LTR ERV1 -1644 3573 2290 2245 104 0 10 chr1 99056839 99057136 -143607217 + AluSx SINE Alu 2 295 -17 8595 102 9 24 chr1 99057136 99057256 -143607097 - MER61B-int LTR ERV1 -2927 2290 2170 9959 146 33 23 chr1 99057262 99059883 -143604470 + L1P3 LINE L1 6 2651 -3810 9808 166 23 14 chr1 99059890 99063311 -143601042 - L1 LINE L1 -2354 5211 1766 582 116 47 0 chr1 99063295 99063381 -143600972 - L1 LINE L1 -7004 561 472 * 2445 191 20 11 chr1 99063455 99063910 -143600443 - L1 LINE L1 -7095 470 12 343 334 210 24 chr1 99064244 99064582 -143599771 + L2 LINE L2 2912 3312 -1 1205 194 56 53 chr1 99064790 99065074 -143599279 + AluJo SINE Alu 9 293 -19 10739 82 13 1 chr1 99066092 99067489 -143596864 + L1P LINE L1 22 1435 -4711 208 188 62 0 chr1 99118300 99118364 -143545989 + (TA)n Simple_repeat Simple_repeat 2 69 0 21 0 0 0 chr1 99118607 99118628 -143545725 + AT_rich Low_complexity Low_complexity 1 21 0 276 214 14 29 chr1 99118726 99118796 -143545557 + L1ME LINE L1 5532 5600 -521 760 237 53 37 chr1 99119260 99119505 -143544848 - MIR SINE MIR -12 250 2 1906 200 84 23 chr1 99119608 99120082 -143544271 + MLT1D LTR MaLR 3 505 0 259 301 0 41 chr1 99120159 99120232 -143544121 - MIR SINE MIR -123 85 16 363 284 86 9 chr1 99120561 99120677 -143543676 + MIR SINE MIR 19 143 -65 283 354 89 0 chr1 99120792 99120950 -143543403 - MIR SINE MIR -11 251 80 225 214 89 112 chr1 99121107 99121263 -143543090 - MIR SINE MIR -103 105 2 256 329 0 0 chr1 99122152 99122222 -143542131 + GA-rich Low_complexity Low_complexity 1 70 0 925 139 19 0 chr1 99122283 99122441 -143541912 - L1PA15 LINE L1 -5 6160 6000 249 253 182 18 chr1 99122464 99122634 -143541719 + L1M4 LINE L1 2733 2930 -3216 2548 37 0 7 chr1 99123282 99123579 -143540774 + AluY SINE Alu 1 295 -16 21 57 0 0 chr1 99123863 99123898 -143540455 + AT_rich Low_complexity Low_complexity 1 35 0 273 128 0 0 chr1 99124348 99124395 -143539958 + (TC)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr1 99125247 99125268 -143539085 + AT_rich Low_complexity Low_complexity 1 21 0 1515 100 0 0 chr1 99125962 99126172 -143538181 + L1PA7 LINE L1 5944 6153 -1 236 253 116 21 chr1 99126728 99126823 -143537530 - MIR SINE MIR -85 177 74 209 384 10 20 chr1 99127082 99127181 -143537172 - L2 LINE L2 -180 3092 2995 18593 193 16 31 chr1 99128105 99133791 -143530562 + L1PA12 LINE L1 1 6485 -1099 360 285 43 40 chr1 99133895 99134148 -143530205 - L1ME LINE L1 -645 5517 5264 1422 192 81 43 chr1 99134481 99134850 -143529503 + MER52A LTR ERV1 1 383 -1372 3703 99 0 2 chr1 99134867 99135384 -143528969 - HERVL-A2 LTR ERVL -769 4885 4370 4633 56 16 11 chr1 99135384 99136503 -143527850 + MER11A LTR ERVK 1 1266 0 31130 78 6 1 chr1 99136503 99140756 -143523597 - HERVL-A2 LTR ERVL -1279 4375 1 3129 114 13 2 chr1 99140756 99141204 -143523149 - MLT2A2 LTR ERVL 0 453 1 18876 153 49 28 chr1 99141204 99141340 -143523013 - L1 LINE L1 -3804 3761 3629 2093 115 7 7 chr1 99141340 99141654 -143522699 - AluSq SINE Alu 0 313 1 18876 153 49 28 chr1 99141654 99141665 -143522688 - L1 LINE L1 -3936 3629 3620 2441 74 0 0 chr1 99141665 99141961 -143522392 - AluY SINE Alu -15 296 1 18876 153 49 28 chr1 99141961 99145457 -143518896 - L1 LINE L1 -3945 3620 5 6235 196 22 4 chr1 99145456 99146836 -143517517 + L1 LINE L1 3711 5119 -1027 * 1125 139 20 10 chr1 99146836 99147037 -143517316 + L1MA2 LINE L1 6101 6304 0 6235 196 22 4 chr1 99147037 99147051 -143517302 + L1 LINE L1 5119 5131 -1015 1143 244 169 2 chr1 99147228 99147666 -143516687 + MER34 LTR ERV1 28 538 -4 371 347 65 14 chr1 99147671 99147887 -143516466 + MER93a LTR ERV1 140 366 -36 560 141 20 27 chr1 99147937 99148086 -143516267 + (TA)n Simple_repeat Simple_repeat 1 148 0 13228 145 29 25 chr1 99148090 99150497 -143513856 + Tigger1 DNA MER2_type 1 2418 0 252 86 0 0 chr1 99151637 99151672 -143512681 + (TA)n Simple_repeat Simple_repeat 2 36 0 549 125 0 0 chr1 99151681 99151761 -143512592 + Tigger1 DNA MER2_type 1023 1102 -1316 347 244 0 0 chr1 99151959 99152037 -143512316 + FRAM/FAM SINE Alu 1 72 -94 786 186 124 0 chr1 99152082 99152259 -143512094 - MER58A DNA MER1_type -25 199 1 96 85 0 0 chr1 99153046 99153282 -143511071 + AT_rich Low_complexity Low_complexity 1 236 0 524 333 89 4 chr1 99153465 99153735 -143510618 - LTR16C LTR ERVL -39 452 160 641 58 0 0 chr1 99154207 99154294 -143510059 - L1PA8 LINE L1 0 6172 6086 406 277 23 79 chr1 99154409 99154586 -143509767 - MER5B DNA MER1_type -1 177 11 1528 194 22 6 chr1 99154615 99154934 -143509419 - MER74A LTR ERVL -231 327 4 887 152 6 0 chr1 99154984 99155148 -143509205 + L1MB1 LINE L1 4660 4824 -1322 2874 173 54 9 chr1 99155190 99155298 -143509055 + L1MB1 LINE L1 5380 5482 -707 1775 179 7 16 chr1 99155298 99155606 -143508747 + AluJb SINE Alu 1 305 -7 2874 173 54 9 chr1 99155606 99156128 -143508225 + L1MB1 LINE L1 5482 6038 -151 1122 171 22 4 chr1 99156128 99156354 -143507999 + L1MA10 LINE L1 6102 6333 -1 247 255 134 13 chr1 99156536 99156693 -143507660 + L1MC4 LINE L1 7866 8041 -1 925 196 0 0 chr1 99156757 99156920 -143507433 + FRAM SINE Alu 1 157 -19 442 324 123 31 chr1 99157126 99157419 -143506934 - L2 LINE L2 -6 3307 2988 225 234 65 32 chr1 99157651 99157775 -143506578 + L1ME4a LINE L1 5990 6117 -4 215 224 13 0 chr1 99158323 99158399 -143505954 + GA-rich Low_complexity Low_complexity 2 78 0 2468 164 26 0 chr1 99158605 99159063 -143505290 + L1MC1 LINE L1 5864 6333 0 6150 101 12 14 chr1 99159290 99160476 -143503877 + L1PA11 LINE L1 4976 6174 0 1456 199 3 0 chr1 99160560 99160852 -143503501 + L1MB3 LINE L1 5814 6106 -77 1811 154 53 36 chr1 99160874 99161230 -143503123 - THE1B LTR MaLR -2 362 1 12094 82 9 0 chr1 99161230 99162796 -143501557 - THE1B-int LTR MaLR 0 1580 1 1124 184 36 31 chr1 99162796 99163100 -143501253 - THE1B LTR MaLR 0 355 1 628 241 29 12 chr1 99163100 99163341 -143501012 + L1M4 LINE L1 2148 2392 -3754 671 224 63 0 chr1 99163359 99163533 -143500820 + L1ME3A LINE L1 5794 5978 -192 657 167 8 8 chr1 99163537 99163669 -143500684 - L1PA12 LINE L1 -5201 2380 2249 21 0 0 0 chr1 99164055 99164076 -143500277 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 99165104 99165128 -143499225 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr1 99165486 99165515 -143498838 + AT_rich Low_complexity Low_complexity 1 29 0 1368 217 128 21 chr1 99165588 99166082 -143498271 + MLT1F LTR MaLR 1 534 -8 307 339 45 0 chr1 99166678 99166790 -143497563 - L2 LINE L2 -10 3303 3187 1603 196 7 23 chr1 99168258 99168564 -143495789 + AluJo SINE Alu 1 301 -11 849 208 79 0 chr1 99168963 99169141 -143495212 + LTR47A LTR ERVL 261 452 0 320 261 0 0 chr1 99169304 99169369 -143494984 + LOR1-int LTR ERV1 3968 4032 -4088 10394 188 17 15 chr1 99169633 99171462 -143492891 + L1M1 LINE L1 15 1846 -5719 2353 140 34 17 chr1 99171462 99171820 -143492533 - THE1B LTR MaLR 0 364 1 1328 79 6 0 chr1 99171820 99171998 -143492355 - THE1B-int LTR MaLR 0 1580 1402 45027 39 2 2 chr1 99172005 99178153 -143486200 + L1PA3 LINE L1 8 6155 0 22 35 0 0 chr1 99178161 99178190 -143486163 + AT_rich Low_complexity Low_complexity 1 29 0 6807 115 36 4 chr1 99178213 99179365 -143484988 + L1MA3 LINE L1 5106 6295 -10 664 212 95 22 chr1 99179392 99179571 -143484782 + LTR47A LTR ERVL 261 452 0 549 280 70 20 chr1 99179994 99180194 -143484159 - MIR SINE MIR 0 262 53 343 301 123 35 chr1 99180672 99180875 -143483478 + MIR SINE MIR 29 249 -13 371 250 50 50 chr1 99180943 99181063 -143483290 + L2 LINE L2 3193 3312 -1 383 319 155 0 chr1 99182450 99182657 -143481696 + MIR SINE MIR 20 258 -4 1712 167 3 11 chr1 99183500 99183782 -143480571 + AluJb SINE Alu 1 280 -32 396 0 0 0 chr1 99183783 99183827 -143480526 + (CA)n Simple_repeat Simple_repeat 1 44 0 259 325 122 20 chr1 99185314 99185514 -143478839 + MIR SINE MIR 1 219 -43 241 244 64 13 chr1 99185655 99185733 -143478620 + LTR16A1 LTR ERVL 36 117 -340 403 260 10 0 chr1 99185783 99185879 -143478474 + LTR16A1 LTR ERVL 359 455 -2 3113 293 68 16 chr1 99185990 99186247 -143478106 + L1M4b LINE L1 5 247 -6612 3381 141 73 2 chr1 99186247 99186764 -143477589 + MER41C LTR ERV1 1 554 0 3113 293 68 16 chr1 99186764 99187536 -143476817 + L1M4b LINE L1 247 1087 -5772 1209 153 113 29 chr1 99187537 99187840 -143476513 + LTR48 LTR ERV1 9 305 -339 1276 190 86 4 chr1 99187894 99188078 -143476275 - L1M4 LINE L1 -563 5621 5405 3046 87 2 21 chr1 99188078 99188504 -143475849 - L1PA14 LINE L1 -1 6160 5743 1276 190 86 4 chr1 99188504 99188598 -143475755 - L1M4 LINE L1 -779 5405 5320 3330 174 25 37 chr1 99188621 99189272 -143475081 - L1MB2 LINE L1 -30 6377 5735 871 259 29 66 chr1 99189272 99189651 -143474702 - LTR8 LTR ERV1 0 691 327 2392 26 0 0 chr1 99189651 99189916 -143474437 + AluYb8 SINE Alu 48 312 -6 1407 97 5 5 chr1 99189922 99190128 -143474225 + L1P LINE L1 3672 3877 -2269 1380 153 59 118 chr1 99190128 99190501 -143473852 - LTR8A LTR ERV1 -375 352 2 6457 213 41 33 chr1 99190507 99190973 -143473380 - L1MB2 LINE L1 -686 5733 5272 3508 47 0 0 chr1 99190973 99191375 -143472978 - L1PA5 LINE L1 -4 6150 5749 6457 213 41 33 chr1 99191375 99192812 -143471541 - L1MB2 LINE L1 -1147 5272 3814 2889 187 38 8 chr1 99192809 99193723 -143470630 - L1MB2 LINE L1 -3515 2867 1919 * 4208 178 45 36 chr1 99193720 99194585 -143469768 - L1MB2 LINE L1 -5495 889 17 554 175 15 29 chr1 99194594 99194648 -143469705 - L1M4 LINE L1 -816 5330 5277 2588 161 47 5 chr1 99194648 99195057 -143469296 - MSTB LTR MaLR 0 426 1 554 175 15 29 chr1 99195057 99195139 -143469214 - L1M4 LINE L1 -869 5277 5196 214 298 107 25 chr1 99195576 99195697 -143468656 - L2 LINE L2 0 3313 3183 2412 172 38 19 chr1 99195842 99196266 -143468087 + MSTB1 LTR MaLR 1 432 0 271 264 35 23 chr1 99196267 99196354 -143467999 - MIR3 SINE MIR -34 174 87 540 266 182 5 chr1 99196356 99196559 -143467794 - MIR SINE MIR -1 261 23 229 288 0 38 chr1 99197049 99197129 -143467224 - L2 LINE L2 0 3313 3237 2334 107 0 0 chr1 99198313 99198623 -143465730 + AluSg SINE Alu 1 310 0 236 200 40 80 chr1 99198679 99198754 -143465599 + L2 LINE L2 3242 3313 0 2411 64 0 10 chr1 99200168 99200466 -143463887 - AluY SINE Alu -16 295 1 1846 179 0 10 chr1 99200581 99200894 -143463459 + AluJo SINE Alu 1 310 -2 220 278 61 35 chr1 99201856 99201971 -143462382 + L2 LINE L2 3168 3285 -28 928 145 38 170 chr1 99201971 99202067 -143462286 + MER4C LTR ERV1 1 108 -357 7570 33 30 2 chr1 99202067 99203575 -143460778 + L1PA4 LINE L1 4626 6155 0 928 145 38 170 chr1 99203575 99204221 -143460132 + MER4C LTR ERV1 108 460 -5 228 269 9 19 chr1 99205702 99205810 -143458543 + CT-rich Low_complexity Low_complexity 1 107 0 2241 95 0 0 chr1 99207225 99207520 -143456833 - AluSx SINE Alu -4 308 14 1151 265 48 66 chr1 99209575 99210073 -143454280 - MLT1J LTR MaLR 0 511 23 187 336 37 19 chr1 99210115 99210222 -143454131 + MIR SINE MIR 150 258 -4 366 286 0 50 chr1 99210899 99211018 -143453335 - L2 LINE L2 -22 3250 3138 2268 62 0 38 chr1 99211085 99211377 -143452976 + AluY SINE Alu 1 281 -30 293 0 27 0 chr1 99211380 99211417 -143452936 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3201 120 25 34 chr1 99212265 99212844 -143451509 - LTR49 LTR ERV1 -23 599 1 796 253 126 43 chr1 99213018 99213366 -143450987 + L2 LINE L2 2892 3268 -45 2411 111 53 14 chr1 99213408 99213769 -143450584 + THE1C LTR MaLR 1 375 0 380 326 31 31 chr1 99214160 99214356 -143449997 + L2 LINE L2 2660 2855 -459 1418 196 144 32 chr1 99215152 99215529 -143448824 - Charlie2 DNA MER1_type 0 2862 2416 249 33 0 0 chr1 99215529 99215559 -143448794 + (CA)n Simple_repeat Simple_repeat 2 31 0 1418 196 144 32 chr1 99215559 99215675 -143448678 - Charlie2 DNA MER1_type -446 2416 2314 800 235 70 40 chr1 99215696 99215994 -143448359 - Charlie2 DNA MER1_type -728 2134 1828 501 272 7 7 chr1 99215977 99216113 -143448240 - Charlie2 DNA MER1_type -2547 315 180 * 548 187 161 58 chr1 99216414 99216569 -143447784 + FRAM SINE Alu 2 172 -4 277 246 57 33 chr1 99216569 99216691 -143447662 - Charlie2 DNA MER1_type -176 2686 2562 253 310 97 39 chr1 99217179 99217334 -143447019 - MIR SINE MIR -49 213 50 180 369 12 0 chr1 99217417 99217501 -143446852 + MIR SINE MIR 157 241 -21 593 245 119 48 chr1 99217507 99217776 -143446577 - L2 LINE L2 -5 3308 3021 21 36 0 0 chr1 99217885 99217913 -143446440 + AT_rich Low_complexity Low_complexity 1 28 0 183 353 20 29 chr1 99218015 99218117 -143446236 - MIR3 SINE MIR -49 159 59 544 174 73 0 chr1 99218185 99218294 -143446059 + FAM SINE Alu 53 169 -16 1466 221 16 68 chr1 99218340 99218479 -143445874 + MLT1A1 LTR MaLR 1 146 -219 216 0 0 0 chr1 99218479 99218503 -143445850 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2125 114 0 0 chr1 99218505 99218786 -143445567 - AluSx SINE Alu -26 286 6 1466 221 16 68 chr1 99218786 99219028 -143445325 + MLT1A1 LTR MaLR 147 365 0 291 133 0 0 chr1 99219156 99219201 -143445152 + AluSq SINE Alu 138 182 -121 2234 119 3 3 chr1 99219730 99220040 -143444313 - AluSq SINE Alu -3 310 1 28 0 0 0 chr1 99220820 99220848 -143443505 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 99221160 99221188 -143443165 + AT_rich Low_complexity Low_complexity 1 28 0 2847 6 0 0 chr1 99222448 99222759 -143441594 + AluYa5 SINE Alu 1 311 0 240 248 95 131 chr1 99223379 99223516 -143440837 + L2 LINE L2 3167 3298 -15 279 54 0 0 chr1 99223518 99223555 -143440798 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 322 290 181 0 chr1 99223659 99223814 -143440539 + MIR SINE MIR 72 254 -8 2107 142 0 0 chr1 99224519 99224815 -143439538 - AluSx SINE Alu -16 296 1 1790 162 0 27 chr1 99224816 99225113 -143439240 - AluJo SINE Alu -21 291 3 223 308 84 9 chr1 99226417 99226524 -143437829 - MIR SINE MIR -147 115 1 279 240 20 20 chr1 99226989 99227089 -143437264 + L1MC5 LINE L1 7827 7926 -35 228 344 21 43 chr1 99227347 99227440 -143436913 + L3 LINE CR1 1016 1106 -471 1628 196 106 10 chr1 99227909 99228307 -143436046 - MER63B DNA MER1_type 0 436 1 344 205 107 9 chr1 99228307 99228419 -143435934 + L1MC5 LINE L1 7666 7788 -173 225 263 25 0 chr1 99228435 99228515 -143435838 + L1MC4 LINE L1 7960 8041 -1 450 290 91 11 chr1 99230041 99230227 -143434126 - L2 LINE L2 -2 3311 3111 24 32 0 0 chr1 99230815 99230846 -143433507 + AT_rich Low_complexity Low_complexity 1 31 0 281 336 26 0 chr1 99230923 99231039 -143433314 + L2 LINE L2 2258 2376 -938 206 341 24 48 chr1 99231773 99231899 -143432454 + L2 LINE L2 2539 2661 -653 21 0 0 0 chr1 99232943 99232964 -143431389 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 99233248 99233283 -143431070 + AT_rich Low_complexity Low_complexity 1 35 0 186 310 0 117 chr1 99234834 99234979 -143429374 + L2 LINE L2 2630 2757 -557 186 315 51 81 chr1 99235404 99235601 -143428752 + L2 LINE L2 3115 3305 -8 2352 231 31 33 chr1 99236997 99237639 -143426714 + MER21B LTR ERV1 98 738 -125 211 326 79 34 chr1 99238459 99238637 -143425716 - MIR SINE MIR -29 233 48 273 291 184 45 chr1 99239445 99239650 -143424703 - L2 LINE L2 -600 2714 2539 1123 209 104 46 chr1 99239650 99239995 -143424358 - MLT1A1 LTR MaLR 0 365 1 273 291 184 45 chr1 99239995 99240301 -143424052 - L2 LINE L2 -775 2539 2132 1381 147 167 0 chr1 99240383 99240634 -143423719 + AluJo SINE Alu 2 294 -18 354 123 0 0 chr1 99240647 99240704 -143423649 + (CA)n Simple_repeat Simple_repeat 2 58 0 26 0 0 0 chr1 99240778 99240804 -143423549 + AT_rich Low_complexity Low_complexity 1 26 0 347 338 50 35 chr1 99241032 99241230 -143423123 - MIR3 SINE MIR -5 203 3 7828 14 0 0 chr1 99241409 99242918 -143421435 - L1PA2 LINE L1 -2 6153 4643 288 0 0 0 chr1 99243170 99243202 -143421151 + (CA)n Simple_repeat Simple_repeat 2 33 0 1700 179 14 7 chr1 99243493 99243789 -143420564 - AluJb SINE Alu -14 298 1 21 89 0 0 chr1 99244186 99244242 -143420111 + AT_rich Low_complexity Low_complexity 1 56 0 281 105 140 0 chr1 99244254 99244311 -143420042 - L1MB3 LINE L1 -42 6141 6077 537 295 83 46 chr1 99244712 99244929 -143419424 - MIR SINE MIR -3 259 35 237 260 143 50 chr1 99245469 99245589 -143418764 + MIR SINE MIR 50 172 -40 456 288 155 11 chr1 99248517 99248961 -143415392 + L1ME4a LINE L1 5382 5889 -232 245 360 67 12 chr1 99250142 99250306 -143414047 - L3 LINE CR1 -474 1103 931 24 0 0 0 chr1 99250309 99250333 -143414020 + AT_rich Low_complexity Low_complexity 1 24 0 2213 164 10 0 chr1 99250333 99250716 -143413637 - L1PA16 LINE L1 -9 6157 5771 6484 161 35 8 chr1 99250731 99252791 -143411562 - L1PA13 LINE L1 -3 6811 4719 1468 164 19 19 chr1 99252801 99253111 -143411242 - L1PA13 LINE L1 -3373 3424 3115 * 2378 181 4 4 chr1 99253105 99253611 -143410742 - L1PA13 LINE L1 -4241 2556 1996 2497 69 3 0 chr1 99254036 99254340 -143410013 + AluY SINE Alu 1 305 -6 202 187 13 53 chr1 99254382 99254457 -143409896 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 728 282 59 24 chr1 99254882 99255333 -143409020 + MLT1G1 LTR MaLR 71 555 0 784 250 70 5 chr1 99256164 99256460 -143407893 + MLT1H1 LTR MaLR 1 378 -217 402 234 78 64 chr1 99257389 99257530 -143406823 - MER5B DNA MER1_type -35 143 1 718 257 22 6 chr1 99257540 99257723 -143406630 + MER5A DNA MER1_type 3 188 -1 311 339 35 41 chr1 99259013 99259184 -143405169 + MIR SINE MIR 47 216 -46 485 181 12 0 chr1 99260414 99260497 -143403856 + AluJ/FLAM SINE Alu 1 84 -228 564 340 154 32 chr1 99260893 99261491 -143402862 - L3 LINE CR1 -12 1565 895 1860 108 87 31 chr1 99262027 99262314 -143402039 + AluSg SINE Alu 1 303 -7 530 210 118 0 chr1 99263126 99263270 -143401083 + FLAM_C SINE Alu 1 158 0 307 283 43 0 chr1 99265961 99266053 -143398300 + MIR SINE MIR 157 252 -10 1220 113 5 16 chr1 99266670 99266856 -143397497 + AluSc SINE Alu 126 309 0 932 218 0 0 chr1 99267143 99267308 -143397045 - MER5A DNA MER1_type -18 171 7 24 53 0 0 chr1 99267389 99267427 -143396926 + AT_rich Low_complexity Low_complexity 1 38 0 291 310 154 62 chr1 99267874 99268309 -143396044 + L3 LINE CR1 1100 1574 -3 1784 116 4 0 chr1 99268327 99268569 -143395784 + AluSg SINE Alu 58 300 -10 591 277 105 88 chr1 99268703 99269226 -143395127 - LTR67 LTR ERVL -1 556 25 463 222 40 0 chr1 99269317 99269416 -143394937 + MER103 DNA DNA 57 159 -7 243 277 201 31 chr1 99269800 99269834 -143394519 - MIR3 SINE MIR -7 201 174 1143 194 99 73 chr1 99269834 99270206 -143394147 + MER58D DNA MER1_type 4 385 -1 243 277 201 31 chr1 99270206 99270330 -143394023 - MIR3 SINE MIR -34 174 16 227 266 25 38 chr1 99270809 99270888 -143393465 + MER117 DNA MER1_type 70 147 -50 1218 150 50 0 chr1 99271875 99272075 -143392278 + MER20 DNA MER1_type 3 212 -7 267 303 92 25 chr1 99272087 99272206 -143392147 + L2 LINE L2 3144 3270 -2 22 0 0 0 chr1 99273135 99273157 -143391196 + AT_rich Low_complexity Low_complexity 1 22 0 2262 100 0 10 chr1 99274108 99274409 -143389944 + AluSx SINE Alu 1 298 -14 25 75 0 0 chr1 99275086 99275139 -143389214 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr1 99277513 99277542 -143386811 + AT_rich Low_complexity Low_complexity 1 29 0 353 286 151 5 chr1 99282375 99282581 -143381772 - MIR SINE MIR -1 261 26 192 278 14 69 chr1 99282994 99283066 -143381287 - MIR3 SINE MIR -132 76 9 189 286 36 0 chr1 99283132 99283188 -143381165 - MIR3 SINE MIR -41 167 110 275 282 199 39 chr1 99283209 99283415 -143380938 - MIR SINE MIR -15 247 9 184 370 14 14 chr1 99283419 99283492 -143380861 - MIR SINE MIR -113 95 23 266 268 183 0 chr1 99285651 99285733 -143378620 + MIR SINE MIR 47 143 -65 253 324 48 48 chr1 99285738 99285843 -143378510 - L2 LINE L2 -5 3267 3163 219 308 39 0 chr1 99285848 99285926 -143378427 + MIR SINE MIR 161 241 -21 409 289 88 81 chr1 99285984 99286268 -143378085 + L2 LINE L2 2914 3199 -73 210 341 46 64 chr1 99287040 99287213 -143377140 + L2 LINE L2 2909 3078 -194 550 271 23 0 chr1 99287605 99287734 -143376619 - MIR SINE MIR -121 141 10 429 194 16 62 chr1 99287808 99287937 -143376416 + MIR3 SINE MIR 82 204 -4 409 289 31 44 chr1 99288781 99288940 -143375413 + MIR SINE MIR 7 163 -99 537 333 16 21 chr1 99289068 99289254 -143375099 + MIR SINE MIR 22 206 -56 1973 191 16 24 chr1 99289308 99289684 -143374669 + MLT1A2 LTR MaLR 1 373 -1 7388 160 66 55 chr1 99290020 99291555 -143372798 - MER52A LTR ERV1 0 1755 204 253 259 0 0 chr1 99291845 99291903 -143372450 - MER52A LTR ERV1 -1697 58 1 506 341 46 0 chr1 99292114 99292287 -143372066 + MIR SINE MIR 60 240 -22 473 259 135 18 chr1 99292990 99293160 -143371193 - MIR SINE MIR -16 246 57 226 293 17 0 chr1 99293197 99293255 -143371098 + MIR SINE MIR 169 227 -35 2048 130 0 3 chr1 99293570 99293871 -143370482 + AluSg SINE Alu 1 300 -10 1470 196 39 0 chr1 99294208 99294520 -143369833 + MER33 DNA MER1_type 1 324 0 333 0 0 0 chr1 99294699 99294736 -143369617 + (A)n Simple_repeat Simple_repeat 1 37 0 1368 176 58 8 chr1 99294966 99295227 -143369126 - AluJb SINE Alu -34 278 5 1481 249 141 20 chr1 99295231 99296119 -143368234 + L2 LINE L2 2313 3313 0 2100 125 0 0 chr1 99296143 99296431 -143367922 + AluSx SINE Alu 1 288 -24 225 213 68 66 chr1 99296439 99296566 -143367787 - MIR SINE MIR -133 129 3 186 320 164 8 chr1 99297767 99297895 -143366458 + MIR SINE MIR 32 179 -83 1741 265 62 69 chr1 99298632 99299352 -143365001 - MER21B LTR ERV1 -148 715 1 74 86 0 0 chr1 99300349 99300535 -143363818 + AT_rich Low_complexity Low_complexity 1 186 0 632 283 11 5 chr1 99300773 99300957 -143363396 - MIR SINE MIR 0 262 78 1827 184 54 40 chr1 99300995 99301349 -143363004 - MLT1A1 LTR MaLR -4 361 3 21 0 0 0 chr1 99301595 99301616 -143362737 + AT_rich Low_complexity Low_complexity 1 21 0 2316 54 7 34 chr1 99302194 99302492 -143361861 + AluY SINE Alu 1 290 -21 785 285 8 48 chr1 99303165 99303352 -143361001 + MIR SINE MIR 19 195 -67 2537 44 0 3 chr1 99303352 99303649 -143360704 - AluY SINE Alu -15 296 1 785 285 8 48 chr1 99303649 99303710 -143360643 + MIR SINE MIR 195 257 -5 378 61 0 0 chr1 99304168 99304217 -143360136 + (CA)n Simple_repeat Simple_repeat 2 50 0 29 47 0 0 chr1 99304258 99304301 -143360052 + AT_rich Low_complexity Low_complexity 1 43 0 2329 101 0 0 chr1 99304457 99304754 -143359599 + AluY SINE Alu 1 297 -14 1815 249 79 22 chr1 99304890 99305381 -143358972 - LTR40a LTR ERVL 0 519 1 571 233 23 8 chr1 99305824 99305953 -143358400 + MER103 DNA DNA 1 131 -35 506 288 32 48 chr1 99306264 99306444 -143357909 - MIR3 SINE MIR -37 171 12 2255 239 33 92 chr1 99307300 99307977 -143356376 - MER21B LTR ERV1 -57 806 176 432 0 0 0 chr1 99307977 99308025 -143356328 + (CA)n Simple_repeat Simple_repeat 2 49 0 2255 239 33 92 chr1 99308025 99308100 -143356253 - MER21B LTR ERV1 -687 176 98 355 219 0 73 chr1 99308221 99308317 -143356036 - MER21B LTR ERV1 -774 89 1 642 320 25 5 chr1 99308664 99308867 -143355486 + MIR SINE MIR 12 218 -44 953 178 141 0 chr1 99308875 99309060 -143355293 + MER46A DNA MER2_type 26 236 0 892 165 49 6 chr1 99309234 99309398 -143354955 - MER39 LTR ERV1 0 707 537 747 237 11 11 chr1 99309403 99309580 -143354773 - AluJo SINE Alu -9 303 127 2197 144 100 31 chr1 99309580 99310031 -143354322 - MER39B LTR ERV1 -171 482 1 350 335 60 37 chr1 99310673 99310891 -143353462 - L2 LINE L2 -40 3232 3010 1779 93 86 43 chr1 99310893 99311171 -143353182 + AluSx SINE Alu 1 290 -22 236 179 103 51 chr1 99311293 99311371 -143352982 - MIR SINE MIR -74 188 107 195 237 0 0 chr1 99311923 99311961 -143352392 - MER5A DNA MER1_type -1 188 151 295 253 121 0 chr1 99312137 99312236 -143352117 - MIR SINE MIR 0 262 152 21 71 0 0 chr1 99313996 99314038 -143350315 + GC_rich Low_complexity Low_complexity 1 42 0 25 65 0 0 chr1 99315634 99315680 -143348673 + AT_rich Low_complexity Low_complexity 1 46 0 181 351 149 7 chr1 99316420 99316568 -143347785 - MIR SINE MIR -48 214 46 561 314 80 0 chr1 99317027 99317253 -143347100 + MIR SINE MIR 4 247 -15 297 130 0 0 chr1 99317778 99317824 -143346529 - Alu SINE Alu -255 46 1 25 31 0 0 chr1 99317836 99317868 -143346485 + AT_rich Low_complexity Low_complexity 1 32 0 572 210 68 49 chr1 99319562 99319724 -143344629 - MER106A DNA MER1_type -71 165 1 2020 108 0 25 chr1 99320178 99320509 -143343844 - AluSc SINE Alu 0 324 1 409 235 49 29 chr1 99320867 99320969 -143343384 + L2 LINE L2 3150 3253 -19 21 0 0 0 chr1 99321162 99321183 -143343170 + AT_rich Low_complexity Low_complexity 1 21 0 2057 140 0 0 chr1 99321294 99321586 -143342767 - AluSg SINE Alu -18 292 1 23 0 0 0 chr1 99322106 99322129 -143342224 + AT_rich Low_complexity Low_complexity 1 23 0 2248 114 0 10 chr1 99323656 99323791 -143340562 + AluSx SINE Alu 1 136 -176 2349 96 0 0 chr1 99323791 99324092 -143340261 + AluSg1 SINE Alu 1 301 -8 2248 114 0 10 chr1 99324092 99324262 -143340091 + AluSx SINE Alu 136 303 -9 1613 195 34 0 chr1 99324307 99324605 -143339748 - AluJb SINE Alu -4 308 1 1721 277 97 48 chr1 99325311 99325389 -143338964 + L1ME LINE L1 19 92 -5988 1555 173 81 3 chr1 99325389 99325672 -143338681 - AluSg SINE Alu -3 307 3 1721 277 97 48 chr1 99325672 99326914 -143337439 + L1ME LINE L1 92 1353 -4727 1079 247 71 58 chr1 99326930 99327182 -143337171 + L1ME LINE L1 2701 2948 -3132 261 0 0 0 chr1 99327182 99327211 -143337142 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 1079 247 71 58 chr1 99327211 99327617 -143336736 + L1ME LINE L1 2948 3368 -2712 1030 195 152 74 chr1 99327660 99328107 -143336246 + L1ME LINE L1 3729 4210 -1870 1566 138 4 28 chr1 99329053 99329306 -143335047 + AluJo SINE Alu 50 296 -16 2303 214 52 11 chr1 99329802 99330364 -143333989 - L1MB7 LINE L1 -9 6175 5591 1392 191 146 5 chr1 99331441 99331844 -143332509 - LTR37B LTR ERV1 0 468 9 409 308 47 28 chr1 99332380 99332510 -143331843 + MER58C DNA MER1_type 1 138 -2282 2473 79 0 0 chr1 99332510 99332814 -143331539 + AluY SINE Alu 1 304 -7 409 308 47 28 chr1 99332814 99332894 -143331459 + MER58C DNA MER1_type 138 215 0 589 251 236 13 chr1 99334090 99334373 -143329980 - L2 LINE L2 -293 3020 2673 632 193 172 6 chr1 99334385 99334750 -143329603 - Charlie1b DNA MER1_type -12 511 48 1197 282 41 13 chr1 99334772 99335080 -143329273 - L2 LINE L2 -660 2654 2331 2968 129 21 74 chr1 99335080 99335647 -143328706 + L1PB4 LINE L1 5617 6153 -3 1197 282 41 13 chr1 99335647 99335725 -143328628 - L2 LINE L2 -983 2331 2257 1136 246 115 52 chr1 99335739 99336098 -143328255 - HAL1 LINE L1 -800 1707 1291 844 174 0 0 chr1 99336098 99336230 -143328123 - FLAM_A SINE Alu -1 132 1 1136 246 115 52 chr1 99336230 99336487 -143327866 - HAL1 LINE L1 -1216 1291 1052 229 286 43 0 chr1 99336488 99336558 -143327795 - HAL1 LINE L1 -1485 1022 950 226 256 11 33 chr1 99336612 99336702 -143327651 - HAL1 LINE L1 -1589 918 831 1019 173 41 65 chr1 99336704 99337001 -143327352 - MSTD LTR MaLR 0 396 66 446 240 101 21 chr1 99337050 99337233 -143327120 - MLT1J LTR MaLR -242 269 34 351 310 35 18 chr1 99338182 99338295 -143326058 - MIR SINE MIR -147 115 1 2243 113 3 0 chr1 99338683 99338983 -143325370 + AluSg SINE Alu 1 301 -9 306 0 0 0 chr1 99340284 99340318 -143324035 + (TG)n Simple_repeat Simple_repeat 1 34 0 417 343 60 9 chr1 99340518 99340734 -143323619 + MIR SINE MIR 12 238 -24 196 315 96 68 chr1 99341001 99341220 -143323133 - L2 LINE L2 -40 3232 3008 680 171 74 74 chr1 99341507 99341683 -143322670 - MER5B DNA MER1_type -1 177 2 180 77 0 0 chr1 99342203 99342229 -143322124 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1065 242 46 125 chr1 99342756 99343229 -143321124 - L2 LINE L2 -10 3303 2909 1341 130 54 22 chr1 99343229 99343452 -143320901 + MER30 DNA MER1_type 1 230 0 1065 242 46 125 chr1 99343452 99343815 -143320538 - L2 LINE L2 -404 2909 2519 11059 81 14 1 chr1 99344000 99344465 -143319888 - L1PA7 LINE L1 -1 6153 5696 2549 54 0 0 chr1 99344465 99344763 -143319590 + AluY SINE Alu 1 298 -13 11059 81 14 1 chr1 99344763 99345271 -143319082 - L1PA7 LINE L1 -458 5696 5196 207 0 0 0 chr1 99345271 99345294 -143319059 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 11059 81 14 1 chr1 99345294 99346626 -143317727 - L1PA7 LINE L1 -958 5196 3833 3999 144 46 7 chr1 99346626 99347325 -143317028 + Tigger3(Golem) DNA MER2_type 2303 3028 -1 721 68 3 52 chr1 99347459 99347607 -143316746 + L1PA5 LINE L1 6023 6151 -4 952 264 23 83 chr1 99347939 99348326 -143316027 - L2 LINE L2 -1 3312 2949 * 968 261 96 20 chr1 99348315 99348671 -143315682 + L2 LINE L2 2125 2507 -807 471 303 118 5 chr1 99349824 99350019 -143314334 + MIR SINE MIR 22 238 -24 2443 133 43 14 chr1 99350182 99350627 -143313726 + L1MB1 LINE L1 5708 6165 -3 690 272 85 17 chr1 99350694 99350929 -143313424 - MIR SINE MIR -2 260 10 844 120 0 73 chr1 99352221 99352371 -143311982 - FRAM SINE Alu -4 172 34 221 333 12 0 chr1 99352457 99352538 -143311815 + GA-rich Low_complexity Low_complexity 3 84 0 402 298 26 33 chr1 99353515 99353666 -143310687 + L2 LINE L2 3164 3313 0 204 345 48 12 chr1 99353669 99353753 -143310600 - L2 LINE L2 -39 3233 3147 261 0 0 0 chr1 99353959 99353988 -143310365 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 600 301 36 98 chr1 99354831 99355167 -143309186 - L2 LINE L2 0 3272 2958 207 0 0 0 chr1 99356371 99356394 -143307959 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 531 297 50 11 chr1 99358726 99358908 -143305445 + MIR3 SINE MIR 9 197 -11 480 236 0 93 chr1 99359431 99359592 -143304761 - L2 LINE L2 -3 3310 3165 2200 120 3 0 chr1 99359595 99359904 -143304449 + AluSp SINE Alu 1 310 -3 1629 210 118 59 chr1 99359915 99360448 -143303905 - L2 LINE L2 -800 2514 1943 2122 139 0 0 chr1 99360448 99360751 -143303602 + AluSx SINE Alu 1 303 -9 1629 210 118 59 chr1 99360751 99360792 -143303561 - L2 LINE L2 -1371 1943 1906 2506 60 0 13 chr1 99361251 99361553 -143302800 - AluY SINE Alu -13 298 1 2167 148 0 0 chr1 99361726 99362037 -143302316 - AluSx SINE Alu -1 311 1 2516 91 37 0 chr1 99362638 99362989 -143301364 - THE1B LTR MaLR 0 364 1 230 243 29 14 chr1 99362994 99363064 -143301289 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 2372 55 0 0 chr1 99363089 99363364 -143300989 + AluY SINE Alu 18 292 -19 4993 166 82 84 chr1 99363652 99364539 -143299814 + Charlie1a DNA MER1_type 4 887 -1874 2218 100 10 0 chr1 99364539 99364830 -143299523 - AluSc SINE Alu -15 294 1 4993 166 82 84 chr1 99364830 99365398 -143298955 + Charlie1a DNA MER1_type 887 1455 0 239 369 0 0 chr1 99365622 99365706 -143298647 - L2 LINE L2 -4 3268 3185 2767 10 10 10 chr1 99366279 99366591 -143297762 - AluYb8 SINE Alu -6 312 1 801 252 81 16 chr1 99369044 99369290 -143295063 - MIR SINE MIR 0 262 1 925 252 45 45 chr1 99369378 99369759 -143294594 - L2 LINE L2 0 3313 2933 1646 255 189 11 chr1 99370349 99370784 -143293569 - L2 LINE L2 -377 2937 2374 2326 103 0 0 chr1 99370784 99371085 -143293268 + AluSx SINE Alu 1 301 -11 1646 255 189 11 chr1 99371085 99371221 -143293132 - L2 LINE L2 -940 2374 2264 231 289 100 22 chr1 99372182 99372272 -143292081 - L2 LINE L2 -8 3264 3168 287 221 57 55 chr1 99372530 99372657 -143291696 + MER20B DNA MER1_type 68 198 -21 402 278 128 22 chr1 99372701 99372881 -143291472 - MIR SINE MIR -62 200 2 23 33 0 0 chr1 99373009 99373039 -143291314 + AT_rich Low_complexity Low_complexity 1 30 0 2241 123 7 0 chr1 99374772 99375081 -143289272 - AluSx SINE Alu -1 311 1 724 197 0 0 chr1 99375576 99375708 -143288645 - FLAM_A SINE Alu -1 132 1 1956 108 22 14 chr1 99375708 99375985 -143288368 - AluSx SINE Alu -5 307 29 2381 81 7 0 chr1 99376050 99376347 -143288006 - AluSx SINE Alu -13 299 1 21 0 0 0 chr1 99376838 99376859 -143287494 + AT_rich Low_complexity Low_complexity 1 21 0 187 345 163 7 chr1 99376916 99377049 -143287304 + MIR SINE MIR 41 190 -53 181 207 17 17 chr1 99377592 99377650 -143286703 + GA-rich Low_complexity Low_complexity 1 58 0 235 216 0 0 chr1 99379469 99379520 -143284833 - L2 LINE L2 -1 3312 3262 2827 153 24 32 chr1 99380138 99380692 -143283661 + L1MC1 LINE L1 5785 6333 0 496 138 0 0 chr1 99381573 99381653 -143282700 + MADE1 DNA Mariner 1 80 0 861 149 0 0 chr1 99382135 99382256 -143282097 + FLAM_C SINE Alu 11 131 -12 2521 70 0 16 chr1 99382320 99382636 -143281717 + AluY SINE Alu 1 311 0 321 330 0 66 chr1 99382636 99382742 -143281611 + L1MC4a LINE L1 5484 5582 -2226 1674 138 0 90 chr1 99383578 99383890 -143280463 + AluJo SINE Alu 1 284 -28 443 311 106 45 chr1 99383897 99384257 -143280096 + L1M4 LINE L1 1274 1761 -4873 314 334 76 18 chr1 99384276 99384617 -143279736 + HAL1 LINE L1 1403 1763 -744 21 0 0 0 chr1 99384628 99384649 -143279704 + AT_rich Low_complexity Low_complexity 1 21 0 533 241 88 35 chr1 99385225 99385463 -143278890 - L1ME1 LINE L1 -63 6120 5861 261 291 50 21 chr1 99385488 99385629 -143278724 + L1MC4a LINE L1 5765 5909 -1899 6801 19 0 0 chr1 99385786 99386561 -143277792 + L1PA3 LINE L1 5380 6154 -1 252 0 0 0 chr1 99386580 99386608 -143277745 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1197 153 28 14 chr1 99386622 99386838 -143277515 + AluJb SINE Alu 1 219 -93 336 283 155 32 chr1 99387016 99387267 -143277086 + L1M4 LINE L1 4383 4664 -1482 2403 93 0 0 chr1 99388324 99388625 -143275728 + AluSg SINE Alu 1 301 -9 327 25 0 0 chr1 99388833 99388873 -143275480 + (TG)n Simple_repeat Simple_repeat 2 41 0 294 87 0 0 chr1 99389768 99389814 -143274539 + (GAA)n Simple_repeat Simple_repeat 1 46 0 482 230 59 53 chr1 99390397 99390549 -143273804 + MIR SINE MIR 13 165 -97 556 320 58 0 chr1 99390565 99390737 -143273616 - MER91A DNA MER1_type -11 185 4 2512 62 0 0 chr1 99390939 99391248 -143273105 - AluY SINE Alu -2 309 1 195 210 48 32 chr1 99391367 99391429 -143272924 + MIR SINE MIR 156 218 -44 363 262 69 0 chr1 99391518 99391663 -143272690 + Charlie7 DNA MER1_type 1 155 -2457 466 253 18 24 chr1 99392068 99392216 -143272137 + MIR SINE MIR 50 199 -63 209 321 0 0 chr1 99392390 99392446 -143271907 - L2 LINE L2 -10 3303 3248 2226 119 0 0 chr1 99393312 99393605 -143270748 - AluSq SINE Alu -20 293 1 32 43 0 0 chr1 99396309 99396355 -143267998 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr1 99396946 99396986 -143267367 + AT_rich Low_complexity Low_complexity 1 40 0 2055 140 30 3 chr1 99397186 99397521 -143266832 - MER2 DNA MER2_type 0 344 1 2655 13 3 3 chr1 99403244 99403569 -143260784 + AluYa5 SINE Alu 1 325 0 199 362 53 59 chr1 99404179 99404331 -143260022 + L2 LINE L2 3102 3252 -20 1974 160 120 17 chr1 99404425 99404843 -143259510 - MLT1C LTR MaLR -6 461 1 1718 247 87 24 chr1 99405029 99405620 -143258733 - MLT1G LTR MaLR 0 590 1 208 217 102 96 chr1 99407565 99407722 -143256631 + L2 LINE L2 2597 2754 -560 302 300 50 10 chr1 99407791 99407891 -143256462 + MIR SINE MIR 23 126 -136 401 339 85 0 chr1 99408181 99408346 -143256007 + MIR SINE MIR 47 225 -37 186 261 22 0 chr1 99408443 99408489 -143255864 - MIR SINE MIR -9 253 207 205 314 105 91 chr1 99408622 99409052 -143255301 - L2 LINE L2 -5 3267 2832 247 306 120 23 chr1 99410840 99411009 -143253344 + L1ME4a LINE L1 5778 5982 -139 2272 118 0 0 chr1 99411009 99411315 -143253038 + AluSx SINE Alu 1 306 -6 247 306 120 23 chr1 99411315 99411403 -143252950 + L1ME4a LINE L1 5982 6060 -61 52 50 0 0 chr1 99411600 99411680 -143252673 + AT_rich Low_complexity Low_complexity 1 80 0 446 291 78 74 chr1 99411980 99412251 -143252102 - L2 LINE L2 -4 3268 2997 756 163 70 35 chr1 99412488 99412660 -143251693 + LTR47A LTR ERVL 275 452 0 727 140 205 0 chr1 99412761 99412932 -143251421 + MER3 DNA MER1_type 1 206 -3 4947 144 45 1 chr1 99413176 99414176 -143250177 + L1PA16 LINE L1 5124 6161 -5 1317 268 56 25 chr1 99414307 99415034 -143249319 + L1ME4a LINE L1 5359 6117 -4 219 197 13 26 chr1 99415753 99415829 -143248524 + GA-rich Low_complexity Low_complexity 2 76 0 201 147 0 0 chr1 99416756 99416790 -143247563 + (CA)n Simple_repeat Simple_repeat 1 34 0 930 268 65 22 chr1 99417013 99417475 -143246878 + L1ME4a LINE L1 5584 6065 -56 567 279 84 15 chr1 99417911 99418124 -143246229 + MIR SINE MIR 3 226 -36 345 191 73 0 chr1 99418251 99418319 -143246034 + L2 LINE L2 3241 3313 0 6769 110 60 60 chr1 99418472 99419702 -143244651 - Tigger3b DNA MER2_type -1 1230 1 861 141 190 58 chr1 99419868 99420110 -143244243 - ORSL DNA AcHobo 0 275 2 549 186 16 24 chr1 99421179 99421303 -143243050 + L1MC1 LINE L1 6211 6333 0 193 213 43 0 chr1 99421624 99421686 -143242667 + MIR SINE MIR 103 167 -95 541 193 109 25 chr1 99421711 99421830 -143242523 - FLAM_C SINE Alu -4 129 1 720 260 29 53 chr1 99421844 99422125 -143242228 + L2 LINE L2 3038 3311 -2 2711 229 43 65 chr1 99422431 99423236 -143241117 - MER21B LTR ERV1 -58 805 18 441 218 0 0 chr1 99423254 99423332 -143241021 - MER21B LTR ERV1 -773 90 13 213 229 82 16 chr1 99423367 99423428 -143240925 - MER91A DNA MER1_type -1 195 131 305 297 103 35 chr1 99423439 99423584 -143240769 - MER91A DNA MER1_type -41 155 1 708 210 22 0 chr1 99423908 99424046 -143240307 + MLT2F LTR ERVL 1 141 -522 515 145 24 0 chr1 99424170 99424253 -143240100 - MLT1A2 LTR MaLR -289 85 1 2132 134 3 10 chr1 99425621 99425935 -143238418 - AluSx SINE Alu 0 312 1 252 310 100 0 chr1 99425939 99426039 -143238314 - L2 LINE L2 -1 3312 3203 375 270 30 0 chr1 99426682 99426782 -143237571 - L3 LINE CR1 -2 1575 1473 484 306 124 8 chr1 99427229 99427471 -143236882 - L3 LINE CR1 -143 1434 1165 198 288 50 25 chr1 99427490 99427570 -143236783 - MIR3 SINE MIR -25 183 102 1036 306 37 29 chr1 99427687 99428168 -143236185 - L3 LINE CR1 -414 1163 679 281 234 59 17 chr1 99428214 99428302 -143236051 + MLT1I LTR MaLR 72 160 -249 43994 30 22 1 chr1 99428308 99434334 -143230019 - L1PA2 LINE L1 0 6155 3 502 126 34 50 chr1 99434514 99434633 -143229720 + L1MA8 LINE L1 6145 6261 -30 245 154 39 0 chr1 99434634 99434686 -143229667 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 2159 96 0 57 chr1 99434696 99435010 -143229343 - AluSq SINE Alu -17 296 1 23 33 0 0 chr1 99435013 99435043 -143229310 + AT_rich Low_complexity Low_complexity 1 30 0 296 276 87 8 chr1 99435088 99435215 -143229138 - L2 LINE L2 -556 2758 2622 227 407 44 0 chr1 99435214 99435349 -143229004 + L3 LINE CR1 280 420 -1157 * 230 317 132 58 chr1 99435405 99435648 -143228705 + L2 LINE L2 2843 3103 -169 1144 163 60 23 chr1 99436007 99436222 -143228131 + MER58A DNA MER1_type 1 223 -1 512 172 107 8 chr1 99436884 99437006 -143227347 + MLT1B LTR MaLR 1 134 -256 529 286 81 26 chr1 99437230 99437464 -143226889 - MIR SINE MIR 0 262 16 2128 133 0 3 chr1 99437684 99437984 -143226369 - AluJb SINE Alu -13 299 1 1763 226 104 45 chr1 99441073 99441754 -143222599 + L1ME3 LINE L1 4583 5303 -843 1807 194 43 3 chr1 99441754 99442105 -143222248 + MLT1A1 LTR MaLR 1 365 0 322 242 40 30 chr1 99442191 99442290 -143222063 - MER5A DNA MER1_type -39 150 51 189 319 44 44 chr1 99442193 99442328 -143222025 + MER5A DNA MER1_type 50 184 -5 * 2303 116 0 0 chr1 99442370 99442672 -143221681 + AluSx SINE Alu 2 303 -9 233 173 19 19 chr1 99443877 99443929 -143220424 + (CA)n Simple_repeat Simple_repeat 2 53 0 270 366 0 0 chr1 99445142 99445243 -143219110 + MIR SINE MIR 162 262 0 1007 288 85 30 chr1 99445354 99445809 -143218544 + L2 LINE L2 2565 3040 -273 1658 149 33 30 chr1 99445809 99446110 -143218243 + AluJb SINE Alu 1 302 -10 1007 288 85 30 chr1 99446110 99446215 -143218138 + L2 LINE L2 3040 3138 -175 522 208 23 17 chr1 99446231 99446389 -143217964 + L1ME3 LINE L1 5468 5629 -562 29 60 0 0 chr1 99446445 99446495 -143217858 + AT_rich Low_complexity Low_complexity 1 50 0 696 238 70 8 chr1 99446583 99446827 -143217526 + L1ME3 LINE L1 5727 5985 -177 443 262 134 86 chr1 99447065 99447416 -143216937 + MLT1L LTR MaLR 12 379 -236 376 228 40 10 chr1 99447475 99447576 -143216777 + MLT1L LTR MaLR 507 610 -5 3818 236 75 27 chr1 99447988 99448191 -143216162 + MER69 DNA AcHobo 4 196 -2330 2035 132 0 29 chr1 99448191 99448501 -143215852 - AluSx SINE Alu -11 301 1 3818 236 75 27 chr1 99448501 99449370 -143214983 + MER69 DNA AcHobo 196 1127 -1399 340 139 25 219 chr1 99449367 99449492 -143214861 + MER69 DNA AcHobo 2278 2337 -189 * 425 234 0 28 chr1 99449492 99449599 -143214754 - U13 snRNA snRNA 0 104 1 340 139 25 219 chr1 99449599 99449710 -143214643 + MER69 DNA AcHobo 2337 2468 -58 366 216 62 21 chr1 99449743 99449840 -143214513 + MER69 DNA AcHobo 2426 2526 0 2431 92 0 0 chr1 99452279 99452583 -143211770 + AluSq SINE Alu 1 304 -9 1892 169 3 0 chr1 99452936 99453231 -143211122 + AluJb SINE Alu 2 297 -15 286 284 45 0 chr1 99453839 99453927 -143210426 - L2 LINE L2 -26 3246 3155 446 280 32 25 chr1 99454195 99454352 -143210001 + L2 LINE L2 3156 3313 0 2056 125 3 19 chr1 99455699 99456012 -143208341 - AluSx SINE Alu -4 308 1 259 364 47 8 chr1 99456249 99456286 -143208067 + L2 LINE L2 3139 3173 -99 2320 189 21 35 chr1 99456286 99456798 -143207555 + MLT1D LTR MaLR 1 505 0 259 364 47 8 chr1 99456798 99456889 -143207464 + L2 LINE L2 3173 3272 0 2464 163 54 10 chr1 99456922 99457292 -143207061 - L1MB4 LINE L1 0 6180 5783 396 0 0 0 chr1 99457292 99457336 -143207017 + (TG)n Simple_repeat Simple_repeat 2 45 0 2464 163 54 10 chr1 99457336 99457450 -143206903 - L1MB4 LINE L1 -397 5783 5675 762 0 31 0 chr1 99457478 99457576 -143206777 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 585 0 50 0 chr1 99457624 99457704 -143206649 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1990 162 20 28 chr1 99457717 99458112 -143206241 - L1MB4 LINE L1 -509 5671 5280 * 6682 37 0 0 chr1 99458081 99458860 -143205493 - L1PA3 LINE L1 -2 6153 5375 421 234 48 0 chr1 99458841 99458986 -143205367 - L1M4 LINE L1 -822 5324 5173 * 2232 102 24 0 chr1 99459026 99459319 -143205034 - AluSc SINE Alu -9 300 1 1477 208 87 37 chr1 99459417 99459788 -143204565 + L1ME3 LINE L1 5703 6101 -61 198 0 0 0 chr1 99459788 99459810 -143204543 + (TG)n Simple_repeat Simple_repeat 2 23 0 1477 208 87 37 chr1 99459810 99459875 -143204478 + L1ME3 LINE L1 6101 6161 -1 2427 92 3 0 chr1 99460043 99460348 -143204005 + AluSq SINE Alu 1 306 -7 2437 81 3 0 chr1 99461308 99461604 -143202749 - AluSc SINE Alu -12 297 1 1543 181 60 7 chr1 99462189 99462470 -143201883 - AluJb SINE Alu -16 296 1 671 231 0 0 chr1 99462495 99462616 -143201737 + FLAM_A SINE Alu 1 121 -12 1360 199 136 49 chr1 99462828 99463254 -143201099 - MER21B LTR ERV1 -21 842 380 811 253 87 1 chr1 99463284 99463541 -143200812 - MER21B LTR ERV1 -553 310 12 311 224 0 0 chr1 99464040 99464098 -143200255 - MIR SINE MIR -2 260 203 584 257 28 11 chr1 99464112 99464291 -143200062 - L2 LINE L2 0 3313 3132 3616 110 57 6 chr1 99464293 99464871 -143199482 - LTR38B LTR ERV1 0 611 1 895 264 95 60 chr1 99464983 99465166 -143199187 - L2 LINE L2 -358 2956 2781 1923 155 10 3 chr1 99465166 99465463 -143198890 + AluJb SINE Alu 1 299 -13 895 264 95 60 chr1 99465463 99465646 -143198707 - L2 LINE L2 -533 2781 2577 954 275 69 18 chr1 99465646 99465850 -143198503 - LTR16A LTR ERVL -17 433 241 1575 179 137 66 chr1 99465850 99466318 -143198035 - MLT1D LTR MaLR -4 501 1 954 275 69 18 chr1 99466318 99466502 -143197851 - LTR16A LTR ERVL -209 241 25 367 277 162 0 chr1 99466527 99466675 -143197678 - L2 LINE L2 -751 2563 2392 516 260 27 14 chr1 99466680 99466826 -143197527 - MIR SINE MIR -63 199 52 759 222 54 6 chr1 99467099 99467266 -143197087 + AluJb SINE Alu 122 296 -16 2374 98 0 0 chr1 99467268 99467563 -143196790 + AluSc SINE Alu 1 295 -14 605 289 18 80 chr1 99467930 99468317 -143196036 - MLT1J LTR MaLR -18 493 131 279 219 86 57 chr1 99468307 99468412 -143195941 - MLT1L LTR MaLR -506 109 2 * 2099 222 39 34 chr1 99468467 99469003 -143195350 - MER44D DNA MER2_type 0 605 12 496 170 0 62 chr1 99469145 99469257 -143195096 + MIR SINE MIR 46 150 -112 1270 181 80 43 chr1 99469277 99469603 -143194750 + MER2 DNA MER2_type 8 345 0 22 0 0 0 chr1 99469644 99469666 -143194687 + AT_rich Low_complexity Low_complexity 1 22 0 476 309 74 17 chr1 99469894 99470124 -143194229 + MIR SINE MIR 14 256 -6 1841 169 0 7 chr1 99470453 99470748 -143193605 + AluJb SINE Alu 3 295 -17 387 0 0 0 chr1 99470841 99470884 -143193469 + (CA)n Simple_repeat Simple_repeat 1 43 0 817 172 8 0 chr1 99471044 99471172 -143193181 - AluJo SINE Alu -178 134 6 225 214 0 0 chr1 99472111 99472153 -143192200 - L2 LINE L2 -1 3271 3230 29 28 0 0 chr1 99472273 99472309 -143192044 + AT_rich Low_complexity Low_complexity 1 36 0 655 275 106 49 chr1 99472616 99473088 -143191265 + MLT1J LTR MaLR 1 499 -12 1953 203 42 75 chr1 99473254 99473630 -143190723 + MLT1F LTR MaLR 42 429 -113 3946 156 30 14 chr1 99473630 99473704 -143190649 + L1MA9 LINE L1 5543 5614 -698 2254 126 128 8 chr1 99473704 99474086 -143190267 - MSTA LTR MaLR 0 428 1 3946 156 30 14 chr1 99474086 99474258 -143190095 + L1MA9 LINE L1 5614 5782 -530 1953 135 3 29 chr1 99474258 99474569 -143189784 + AluSx SINE Alu 2 304 -8 3946 156 30 14 chr1 99474569 99474932 -143189421 + L1MA9 LINE L1 5782 6170 -142 258 105 0 0 chr1 99474932 99474970 -143189383 + (CA)n Simple_repeat Simple_repeat 1 38 0 3946 156 30 14 chr1 99474970 99475097 -143189256 + L1MA9 LINE L1 6170 6293 -19 1953 203 42 75 chr1 99475097 99475238 -143189115 + MLT1F LTR MaLR 429 542 0 2076 112 11 4 chr1 99475943 99476220 -143188133 - AluSc SINE Alu -30 279 1 209 255 196 20 chr1 99476312 99476414 -143187939 - L2 LINE L2 -2 3270 3151 7587 38 0 0 chr1 99476670 99477809 -143186544 - L1PA6 LINE L1 -11 6143 5005 701 149 113 7 chr1 99478228 99478369 -143185984 + MLT1C LTR MaLR 6 161 -306 7703 109 27 53 chr1 99478374 99479738 -143184615 - SVA Other Other 0 1386 85 318 62 0 0 chr1 99479738 99479786 -143184567 + AluSp/q SINE Alu 256 303 0 300 169 183 0 chr1 99481773 99481844 -143182509 + MER5A DNA MER1_type 9 92 -97 2069 127 0 3 chr1 99482094 99482398 -143181955 - AluSx SINE Alu 0 303 1 288 306 14 0 chr1 99482767 99482839 -143181514 - MIR SINE MIR -100 108 36 1553 203 3 3 chr1 99484257 99484557 -143179796 + AluJo SINE Alu 1 300 -12 308 214 22 0 chr1 99484665 99484754 -143179599 - MIR SINE MIR 0 262 172 2076 121 0 10 chr1 99484908 99485198 -143179155 - AluSx SINE Alu -17 295 9 399 305 17 0 chr1 99485325 99485443 -143178910 - MIR SINE MIR -59 149 30 327 335 12 12 chr1 99485475 99485636 -143178717 - MIR3 SINE MIR -4 204 44 198 103 0 0 chr1 99485656 99485685 -143178668 + (GAA)n Simple_repeat Simple_repeat 2 30 0 404 255 49 0 chr1 99486283 99486385 -143177968 - MIR SINE MIR -72 190 84 207 0 0 0 chr1 99486541 99486564 -143177789 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 404 349 34 11 chr1 99486834 99487009 -143177344 - MER5A DNA MER1_type 0 189 11 256 337 31 0 chr1 99487800 99487898 -143176455 - L2 LINE L2 -8 3264 3164 681 253 42 21 chr1 99488229 99488333 -143176020 - MIR SINE MIR -32 230 119 1240 181 5 168 chr1 99488333 99488507 -143175846 + MLT1A2 LTR MaLR 1 59 -315 1779 169 17 0 chr1 99488507 99488797 -143175556 + AluJo SINE Alu 1 295 -17 1240 181 5 168 chr1 99488797 99489069 -143175284 + MLT1A2 LTR MaLR 59 374 0 681 253 42 21 chr1 99489069 99489154 -143175199 - MIR SINE MIR -143 119 37 200 302 103 9 chr1 99489452 99489568 -143174785 - L3 LINE CR1 -2 1575 1449 189 0 0 0 chr1 99491145 99491166 -143173187 + (CCA)n Simple_repeat Simple_repeat 3 23 0 189 268 113 84 chr1 99492488 99492630 -143171723 + L2 LINE L2 3117 3262 -10 479 238 63 16 chr1 99493031 99493157 -143171196 - Charlie8 DNA MER1_type -2276 141 10 2989 185 16 30 chr1 99493407 99493969 -143170384 - MLT2B3 LTR ERVL 0 554 1 2354 88 3 3 chr1 99494915 99495212 -143169141 + AluSp SINE Alu 1 297 -16 655 216 121 44 chr1 99495429 99495702 -143168651 - L2 LINE L2 0 3313 3020 2112 237 221 16 chr1 99495714 99496575 -143167778 - L2 LINE L2 -499 2815 1779 217 257 29 43 chr1 99496576 99496646 -143167707 - L2 LINE L2 -1797 1517 1449 813 152 0 36 chr1 99496760 99496898 -143167455 - FLAM_C SINE Alu 0 133 1 941 178 25 30 chr1 99497215 99497412 -143166941 + AluJo SINE Alu 87 282 -30 244 0 56 0 chr1 99497415 99497451 -143166902 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 431 151 82 94 chr1 99497777 99497936 -143166417 - MIR SINE MIR -10 252 96 193 282 167 0 chr1 99498164 99498242 -143166111 - L2 LINE L2 -30 3283 3193 488 301 84 15 chr1 99498405 99498608 -143165745 + MIR SINE MIR 8 224 -38 1709 182 24 48 chr1 99498966 99499269 -143165084 + MLT1A1 LTR MaLR 1 295 -70 2320 106 0 0 chr1 99499269 99499570 -143164783 - AluSx SINE Alu -11 301 1 1709 182 24 48 chr1 99499570 99499640 -143164713 + MLT1A1 LTR MaLR 295 365 0 756 261 73 92 chr1 99499659 99500288 -143164065 - L1ME4a LINE L1 0 6121 5505 2189 116 0 0 chr1 99500416 99500717 -143163636 - AluSg SINE Alu -9 301 1 21 0 0 0 chr1 99500717 99500738 -143163615 + AT_rich Low_complexity Low_complexity 1 21 0 210 143 0 0 chr1 99502263 99502298 -143162055 + (CCG)n Simple_repeat Simple_repeat 2 36 0 22 70 0 0 chr1 99502384 99502427 -143161926 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 99502995 99503016 -143161337 + GC_rich Low_complexity Low_complexity 1 21 0 299 307 204 53 chr1 99503834 99504460 -143159893 - L3 LINE CR1 -109 1468 748 294 298 99 7 chr1 99505548 99505587 -143158766 - MIR3 SINE MIR -5 203 169 315 0 0 0 chr1 99505587 99505622 -143158731 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 2303 41 45 0 chr1 99505625 99505893 -143158460 - AluY SINE Alu -31 280 1 294 298 99 7 chr1 99505893 99505990 -143158363 - MIR3 SINE MIR -40 168 50 2250 92 24 0 chr1 99506410 99506703 -143157650 + AluSx SINE Alu 1 300 -12 235 125 0 83 chr1 99506850 99506898 -143157455 + L2 LINE L2 3188 3231 -82 206 244 167 0 chr1 99507087 99507165 -143157188 + L2 LINE L2 3210 3300 -13 475 222 70 76 chr1 99507246 99507417 -143156936 + MER5B DNA MER1_type 7 176 -2 485 266 74 15 chr1 99508595 99508798 -143155555 - MIR SINE MIR -2 260 46 23 0 0 0 chr1 99508834 99508857 -143155496 + AT_rich Low_complexity Low_complexity 1 23 0 763 202 65 0 chr1 99510000 99510168 -143154185 - Charlie8 DNA MER1_type -2212 205 27 2446 89 0 0 chr1 99510245 99510547 -143153806 - AluSx SINE Alu -10 302 1 464 199 139 111 chr1 99512201 99512417 -143151936 - MIR SINE MIR -21 241 20 221 286 2 28 chr1 99512857 99512941 -143151412 + MIR SINE MIR 13 96 -112 341 288 29 36 chr1 99513732 99513871 -143150482 - MIR SINE MIR -78 184 47 188 311 61 61 chr1 99514196 99514360 -143149993 - L2 LINE L2 -429 2885 2722 269 232 36 80 chr1 99514421 99514559 -143149794 + MER5A DNA MER1_type 32 163 -26 207 337 43 0 chr1 99514597 99514689 -143149664 - L2 LINE L2 -1040 2274 2179 524 204 238 6 chr1 99514950 99515131 -143149222 + MIR SINE MIR 21 243 -19 758 170 77 46 chr1 99516826 99517020 -143147333 + MIR SINE MIR 15 214 -48 1784 136 9 57 chr1 99517416 99517733 -143146620 + AluJb SINE Alu 1 302 -10 230 305 172 20 chr1 99518095 99518246 -143146107 + MIR3 SINE MIR 24 197 -11 1113 214 56 10 chr1 99520227 99520580 -143143773 - L1MCa LINE L1 -3947 2479 2202 300 212 35 51 chr1 99520618 99520685 -143143668 + L1ME4a LINE L1 5946 6004 -117 2398 86 10 3 chr1 99520685 99520988 -143143365 + AluSp SINE Alu 1 305 -8 300 212 35 51 chr1 99520988 99521061 -143143292 + L1ME4a LINE L1 6004 6077 -44 248 303 98 33 chr1 99521518 99521640 -143142713 + MIR SINE MIR 62 191 -71 251 367 108 22 chr1 99521705 99522166 -143142187 + L2 LINE L2 2148 2648 -666 232 361 57 61 chr1 99522308 99522715 -143141638 + L2 LINE L2 2839 3243 -29 2169 118 3 7 chr1 99523388 99523693 -143140660 + AluSx SINE Alu 2 305 -7 201 196 0 0 chr1 99524095 99524146 -143140207 + A-rich Low_complexity Low_complexity 1 51 0 2742 117 43 43 chr1 99524414 99524920 -143139433 + L1PA13 LINE L1 5657 6162 -1 603 239 28 23 chr1 99525094 99525270 -143139083 - MLT1A2 LTR MaLR -197 177 1 270 297 47 0 chr1 99525274 99525338 -143139015 + L2 LINE L2 3003 3069 -244 228 219 104 21 chr1 99525398 99525494 -143138859 - MLT1F LTR MaLR -166 376 273 1248 159 30 0 chr1 99525578 99525779 -143138574 + AluJo SINE Alu 76 282 -30 2242 111 0 7 chr1 99525779 99526086 -143138267 - AluSx SINE Alu -7 305 1 462 309 7 15 chr1 99526289 99526425 -143137928 + L2 LINE L2 3179 3313 0 450 260 58 51 chr1 99526499 99526691 -143137662 - MIR SINE MIR -50 212 26 1578 165 3 62 chr1 99527309 99527618 -143136735 - AluJo SINE Alu -21 291 1 588 194 61 0 chr1 99527632 99527797 -143136556 - MER45B DNA AcHobo -92 948 774 1580 78 0 28 chr1 99527797 99528014 -143136339 + AluSg SINE Alu 1 211 -99 1792 180 70 143 chr1 99529235 99529392 -143134961 + LTR8A LTR ERV1 1 168 -559 829 121 0 57 chr1 99529392 99529533 -143134820 - FLAM_C SINE Alu 0 133 1 1792 180 70 143 chr1 99529533 99530138 -143134215 + LTR8A LTR ERV1 168 707 -20 2191 100 0 7 chr1 99530738 99531029 -143133324 + AluSq SINE Alu 2 290 -23 30 45 0 0 chr1 99531418 99531462 -143132891 + AT_rich Low_complexity Low_complexity 1 44 0 2320 96 0 0 chr1 99533268 99533561 -143130792 + AluSc SINE Alu 1 293 -16 225 0 0 0 chr1 99533577 99533602 -143130751 + (TA)n Simple_repeat Simple_repeat 2 26 0 245 293 98 51 chr1 99533736 99533951 -143130402 + L3 LINE CR1 1321 1545 -32 476 170 0 0 chr1 99534135 99534229 -143130124 - MER117 DNA MER1_type -50 147 54 2335 106 0 0 chr1 99534253 99534556 -143129797 + AluSg SINE Alu 1 303 -7 261 331 106 0 chr1 99535076 99535218 -143129135 + L2 LINE L2 2155 2311 -1003 328 279 200 0 chr1 99535261 99535426 -143128927 - MIR SINE MIR -35 227 30 244 333 21 10 chr1 99539116 99539212 -143125141 - MIR3 SINE MIR -14 194 98 378 325 86 7 chr1 99539606 99539757 -143124596 - MIR SINE MIR -89 173 11 874 263 19 5 chr1 99540084 99540289 -143124064 + MIR SINE MIR 49 256 -6 203 365 61 22 chr1 99541392 99541622 -143122731 + L2 LINE L2 2395 2633 -681 409 333 135 51 chr1 99541797 99542190 -143122163 + L2 LINE L2 2844 3269 -3 270 0 0 0 chr1 99542336 99542366 -143121987 + (TA)n Simple_repeat Simple_repeat 1 30 0 1355 183 72 64 chr1 99544001 99544405 -143119948 - L1MB8 LINE L1 0 6178 5772 566 141 0 0 chr1 99544399 99544498 -143119855 - L1MB2 LINE L1 -51 6120 6022 * 1154 131 52 40 chr1 99544490 99544742 -143119611 - L1MB8 LINE L1 -398 5786 5532 323 115 0 0 chr1 99544745 99544797 -143119556 - L1MB8 LINE L1 -747 5431 5380 694 262 86 13 chr1 99545570 99545803 -143118550 - MIR SINE MIR 0 262 13 2138 142 0 0 chr1 99545902 99546211 -143118142 - AluSx SINE Alu -3 309 1 3579 109 47 16 chr1 99546264 99546837 -143117516 + L1P LINE L1 1261 1856 -4290 2220 116 0 0 chr1 99546837 99547129 -143117224 + AluSg SINE Alu 6 297 -13 3579 109 47 16 chr1 99547129 99547167 -143117186 + L1P LINE L1 1856 1891 -4255 2263 105 0 7 chr1 99547200 99547505 -143116848 + AluSc SINE Alu 2 304 -5 201 74 0 0 chr1 99548866 99548893 -143115460 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 486 315 15 13 chr1 99551243 99551401 -143112952 + MIR3 SINE MIR 10 170 -38 342 0 0 0 chr1 99551448 99551486 -143112867 + (TG)n Simple_repeat Simple_repeat 1 38 0 449 285 119 32 chr1 99552351 99552604 -143111749 - L2 LINE L2 0 3313 3039 240 325 52 0 chr1 99552637 99552714 -143111639 + L2 LINE L2 3187 3267 -5 684 205 108 0 chr1 99552727 99552893 -143111460 - MIR SINE MIR -5 257 74 542 284 15 0 chr1 99553288 99553422 -143110931 + MER5A DNA MER1_type 6 141 -48 848 230 26 0 chr1 99553661 99553852 -143110501 + MER58A DNA MER1_type 22 217 -7 568 198 15 86 chr1 99553875 99554072 -143110281 + MER3 DNA MER1_type 27 209 0 719 227 92 0 chr1 99554284 99554469 -143109884 + MIR SINE MIR 61 262 0 2441 83 0 3 chr1 99555687 99555989 -143108364 + AluSq SINE Alu 1 301 -12 277 341 0 0 chr1 99556332 99556420 -143107933 + L3 LINE CR1 1315 1402 -175 25 51 0 0 chr1 99556710 99556749 -143107604 + AT_rich Low_complexity Low_complexity 1 39 0 207 273 0 15 chr1 99557028 99557094 -143107259 - MIR SINE MIR 0 262 198 1378 242 116 24 chr1 99558235 99558693 -143105660 - L2 LINE L2 -1844 1470 971 327 343 20 0 chr1 99559205 99559304 -143105049 - L2 LINE L2 -8 3264 3164 185 311 39 39 chr1 99559478 99559581 -143104772 - L2 LINE L2 -34 3238 3136 181 222 93 0 chr1 99559666 99559720 -143104633 + L2 LINE L2 3214 3272 0 848 193 19 6 chr1 99560051 99560212 -143104141 + FAM SINE Alu 1 163 -12 195 100 0 0 chr1 99560215 99560245 -143104108 + (TG)n Simple_repeat Simple_repeat 2 31 0 369 267 113 50 chr1 99561579 99561800 -143102553 + MIR SINE MIR 13 247 -15 183 333 89 30 chr1 99562180 99562315 -143102038 + L2 LINE L2 2824 2966 -306 2044 127 39 0 chr1 99564381 99564665 -143099688 - AluSx SINE Alu -17 295 1 2151 100 10 10 chr1 99564717 99565018 -143099335 - AluSp SINE Alu -12 301 1 219 315 105 25 chr1 99565288 99565450 -143098903 - MIR SINE MIR -68 194 20 809 196 14 48 chr1 99569241 99569450 -143094903 + MER20 DNA MER1_type 1 202 -17 244 183 160 30 chr1 99570518 99570649 -143093704 + L1ME4a LINE L1 5969 6116 -5 220 271 17 0 chr1 99570928 99570987 -143093366 + MIR SINE MIR 182 241 -21 212 290 16 32 chr1 99571027 99571089 -143093264 + L2 LINE L2 3208 3268 -4 458 305 176 26 chr1 99571090 99571506 -143092847 - L3 LINE CR1 -410 1167 690 7358 175 69 10 chr1 99571741 99573334 -143091019 + L1MC3 LINE L1 6071 7785 0 1911 152 0 3 chr1 99573348 99573650 -143090703 + AluJb SINE Alu 3 303 -9 2362 97 0 3 chr1 99573652 99573963 -143090390 + AluY SINE Alu 1 310 -1 3442 198 53 11 chr1 99574342 99574619 -143089734 - L1MC4a LINE L1 0 7808 7544 2283 88 7 0 chr1 99574619 99574925 -143089428 - AluY SINE Alu -3 308 1 3442 198 53 11 chr1 99574925 99575401 -143088952 - L1MC4a LINE L1 -264 7544 7023 181 237 17 34 chr1 99575457 99575516 -143088837 - MIR SINE MIR 0 262 205 250 306 71 0 chr1 99575691 99575776 -143088577 + L2 LINE L2 3177 3267 -5 786 297 161 31 chr1 99575857 99576263 -143088090 - L3 LINE CR1 -606 971 492 2346 80 7 7 chr1 99576263 99576565 -143087788 - AluY SINE Alu -9 302 1 786 297 161 31 chr1 99576565 99576636 -143087717 - L3 LINE CR1 -1085 492 432 800 284 210 3 chr1 99576722 99577084 -143087269 - L2 LINE L2 0 3313 2877 391 130 101 14 chr1 99577715 99577784 -143086569 + MLT1A1 LTR MaLR 1 75 -299 1244 218 35 11 chr1 99577884 99578168 -143086185 + MLT1A1 LTR MaLR 75 365 0 436 296 49 0 chr1 99580155 99580297 -143084056 - MIR3 SINE MIR -27 181 33 242 164 18 0 chr1 99580578 99580633 -143083720 + CT-rich Low_complexity Low_complexity 2 57 0 314 328 45 45 chr1 99580707 99580884 -143083469 - MIR SINE MIR 0 262 86 364 289 239 11 chr1 99582208 99582388 -143081965 - MIR SINE MIR -13 249 29 * 424 286 19 26 chr1 99582385 99582539 -143081814 + L3 LINE CR1 1270 1422 -155 278 229 0 0 chr1 99582560 99582621 -143081732 - L1MB7 LINE L1 -10 6174 6114 204 293 0 52 chr1 99582627 99582685 -143081668 + L3 LINE CR1 1417 1471 -106 381 299 18 54 chr1 99582926 99583093 -143081260 + MER5B DNA MER1_type 17 177 -1 22 0 0 0 chr1 99583690 99583712 -143080641 + AT_rich Low_complexity Low_complexity 1 22 0 231 324 39 0 chr1 99584023 99584125 -143080228 + MIR SINE MIR 87 192 -70 195 222 0 0 chr1 99585082 99585127 -143079226 + (CA)n Simple_repeat Simple_repeat 2 46 0 2334 92 0 10 chr1 99586814 99587119 -143077234 + AluSc SINE Alu 1 302 -7 26 0 0 0 chr1 99587285 99587311 -143077042 + AT_rich Low_complexity Low_complexity 1 26 0 209 32 0 32 chr1 99587313 99587344 -143077009 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1754 153 0 38 chr1 99587349 99587637 -143076716 - AluJo SINE Alu -31 281 5 653 203 0 60 chr1 99587889 99588022 -143076331 + FLAM_A SINE Alu 2 126 -7 1972 172 94 41 chr1 99588771 99589399 -143074954 + MER39 LTR ERV1 1 707 0 1501 131 0 0 chr1 99589648 99589869 -143074484 - AluSg/x SINE Alu -8 304 84 243 310 53 26 chr1 99590130 99590243 -143074110 + MIR SINE MIR 106 221 -41 438 331 60 69 chr1 99590244 99590591 -143073762 - L2 LINE L2 -19 3253 2910 488 312 53 12 chr1 99591581 99591751 -143072602 + MIR3 SINE MIR 12 188 -20 25 0 0 0 chr1 99592013 99592038 -143072315 + AT_rich Low_complexity Low_complexity 1 25 0 2302 70 43 3 chr1 99592844 99593143 -143071210 - AluY SINE Alu 0 311 1 790 283 39 4 chr1 99593281 99593514 -143070839 - MIR SINE MIR -17 245 5 288 321 46 46 chr1 99595048 99595179 -143069174 + MIR SINE MIR 47 177 -85 232 237 13 53 chr1 99597266 99597342 -143067011 - MER5A DNA MER1_type -92 97 25 2304 105 7 0 chr1 99597503 99597809 -143066544 - AluSx SINE Alu -4 308 1 207 0 0 0 chr1 99598421 99598444 -143065909 + (ATG)n Simple_repeat Simple_repeat 1 23 0 329 319 151 22 chr1 99598585 99598767 -143065586 - MIR SINE MIR -50 212 8 279 104 0 0 chr1 99599462 99599510 -143064843 + (TG)n Simple_repeat Simple_repeat 2 49 0 2593 60 0 0 chr1 99600037 99600339 -143064014 + AluY SINE Alu 1 302 -9 441 317 47 25 chr1 99601055 99601253 -143063100 + MIR SINE MIR 12 214 -48 621 303 148 25 chr1 99602161 99602561 -143061792 + L2 LINE L2 1869 2317 -997 259 336 29 15 chr1 99602627 99602764 -143061589 + L2 LINE L2 2619 2757 -557 232 194 78 97 chr1 99602862 99602965 -143061388 + MER92C LTR ERV1 62 162 -392 367 155 0 0 chr1 99603032 99603090 -143061263 + MER92C LTR ERV1 497 554 0 223 248 18 26 chr1 99603118 99603231 -143061122 + (TTATA)n Simple_repeat Simple_repeat 4 115 0 303 267 33 11 chr1 99603395 99603485 -143060868 - MLT1J LTR MaLR -40 471 380 415 239 66 99 chr1 99603498 99603734 -143060619 - MLT1J LTR MaLR -183 269 68 411 41 0 0 chr1 99604637 99604686 -143059667 - pTR5 LTR ERV1 -2046 392 344 * 1134 200 0 39 chr1 99604684 99604964 -143059389 - pTR5 LTR ERV1 -1415 1023 755 711 143 126 0 chr1 99605196 99605315 -143059038 - AluJo SINE Alu -177 135 2 263 211 113 14 chr1 99605420 99605469 -143058884 + L2 LINE L2 3151 3210 -62 394 18 36 0 chr1 99605469 99605524 -143058829 + (TG)n Simple_repeat Simple_repeat 2 58 0 263 211 113 14 chr1 99605524 99605545 -143058808 + L2 LINE L2 3210 3228 -44 212 316 32 110 chr1 99607378 99607533 -143056820 - MIR SINE MIR -113 149 7 236 277 80 89 chr1 99607663 99607876 -143056477 + L2 LINE L2 2543 2753 -561 687 264 48 0 chr1 99608156 99608323 -143056030 - MER69A DNA AcHobo 0 177 3 240 371 61 8 chr1 99608387 99608519 -143055834 + L2 LINE L2 3134 3272 0 253 167 14 69 chr1 99608735 99608807 -143055546 - MIR SINE MIR 0 262 195 282 190 157 50 chr1 99609383 99609504 -143054849 - L2 LINE L2 0 3313 3180 24 0 0 0 chr1 99610257 99610281 -143054072 + AT_rich Low_complexity Low_complexity 1 24 0 1819 125 96 7 chr1 99611534 99611815 -143052538 + AluJb SINE Alu 1 306 -6 258 0 71 0 chr1 99611967 99612009 -143052344 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1974 135 4 0 chr1 99612015 99612296 -143052057 - AluSx SINE Alu -30 282 1 181 265 24 84 chr1 99612406 99612489 -143051864 - MIR SINE MIR -165 97 20 2114 111 0 17 chr1 99612519 99612817 -143051536 - AluSq SINE Alu -20 293 1 216 267 17 33 chr1 99613013 99613073 -143051280 - L2 LINE L2 -4 3268 3210 621 162 0 0 chr1 99613305 99613410 -143050943 - L1MB8 LINE L1 -2 6176 6072 5672 118 31 25 chr1 99613924 99615438 -143048915 + L1PA16 LINE L1 4529 6058 -108 3805 136 8 0 chr1 99615438 99615959 -143048394 + MER1A DNA MER1_type 3 527 0 5672 118 31 25 chr1 99615959 99616051 -143048302 + L1PA16 LINE L1 6058 6148 -18 294 333 93 46 chr1 99616451 99616704 -143047649 + L2 LINE L2 2892 3169 -144 458 88 176 0 chr1 99616704 99616772 -143047581 - MADE1 DNA Mariner 0 80 1 294 333 93 46 chr1 99616772 99616884 -143047469 + L2 LINE L2 3169 3274 -39 280 253 71 30 chr1 99617100 99617199 -143047154 + MIR SINE MIR 90 192 -70 198 303 155 39 chr1 99617278 99617433 -143046920 + MIR SINE MIR 20 192 -70 1590 229 33 8 chr1 99617828 99618194 -143046159 - L1ME3A LINE L1 -342 5828 5454 263 274 55 14 chr1 99618434 99618507 -143045846 - L2 LINE L2 -57 3215 3140 2155 100 0 7 chr1 99618523 99618823 -143045530 - AluSx SINE Alu -14 298 1 531 341 100 32 chr1 99619495 99619864 -143044489 - L2 LINE L2 -18 3254 2861 602 173 48 0 chr1 99620067 99620171 -143044182 - Tigger3(Golem) DNA MER2_type 0 3038 2930 2192 151 6 29 chr1 99620257 99620602 -143043751 + MER1B DNA MER1_type 1 337 0 2023 118 11 0 chr1 99620664 99620934 -143043419 - AluSx SINE Alu -29 283 11 460 176 0 0 chr1 99620941 99621009 -143043344 - Tigger3(Golem) DNA MER2_type -2960 69 2 216 0 0 0 chr1 99621456 99621480 -143042873 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr1 99621648 99621669 -143042684 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr1 99621711 99621732 -143042621 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr1 99622066 99622089 -143042264 + AT_rich Low_complexity Low_complexity 1 23 0 3147 174 27 22 chr1 99622872 99623060 -143041293 + L1MB7 LINE L1 5096 5282 -902 1384 174 68 64 chr1 99623060 99623174 -143041179 + AluJb SINE Alu 1 113 -199 207 0 0 0 chr1 99623174 99623197 -143041156 + (TATTG)n Simple_repeat Simple_repeat 2 24 0 1384 174 68 64 chr1 99623197 99623393 -143040960 + AluJb SINE Alu 113 312 0 3147 174 27 22 chr1 99623393 99623632 -143040721 + L1MB7 LINE L1 5282 5518 -666 2294 87 28 0 chr1 99623632 99623920 -143040433 + AluSc SINE Alu 2 297 -12 3147 174 27 22 chr1 99623920 99624305 -143040048 + L1MB7 LINE L1 5518 5886 -298 3794 192 79 29 chr1 99624321 99625122 -143039231 - MER21B LTR ERV1 -11 852 12 826 221 47 16 chr1 99625142 99625332 -143039021 + L1MB7 LINE L1 5881 6076 -108 617 165 41 8 chr1 99625326 99625447 -143038906 + L1MB8 LINE L1 6017 6141 -37 * 233 176 162 0 chr1 99625467 99625535 -143038818 + L1MB8 LINE L1 6092 6170 -8 2110 32 0 0 chr1 99625590 99625837 -143038516 - L1P LINE L1 -2136 4010 3764 8233 20 2 1 chr1 99625837 99626939 -143037414 + L1PA3 LINE L1 5053 6155 0 229 320 48 10 chr1 99626995 99627098 -143037255 + L3 LINE CR1 563 669 -908 354 267 167 0 chr1 99627102 99627222 -143037131 + LTR33 LTR ERVL 20 159 -362 215 298 0 0 chr1 99627643 99627690 -143036663 + L3 LINE CR1 1051 1097 -480 312 374 97 13 chr1 99628114 99628269 -143036084 - MIR3 SINE MIR -16 192 25 354 192 64 104 chr1 99628481 99628575 -143035778 - L2 LINE L2 -4 3309 3220 2089 111 10 10 chr1 99628575 99628872 -143035481 + AluSg SINE Alu 1 297 -13 354 192 64 104 chr1 99628872 99628902 -143035451 - L2 LINE L2 -93 3220 3190 1910 214 93 59 chr1 99628961 99629417 -143034936 + MLT1F LTR MaLR 1 479 -63 2346 109 3 0 chr1 99629417 99629728 -143034625 - AluSx SINE Alu 0 312 1 1910 214 93 59 chr1 99629728 99629795 -143034558 + MLT1F LTR MaLR 479 542 0 1411 43 0 0 chr1 99630034 99630198 -143034155 + AluY SINE Alu 144 307 -4 1037 245 135 30 chr1 99630510 99630873 -143033480 + MLT1I LTR MaLR 5 405 -4 2345 200 77 39 chr1 99630938 99631200 -143033153 + LTR48B LTR ERV1 1 251 -393 2315 64 0 58 chr1 99631200 99631528 -143032825 + AluSg1 SINE Alu 1 309 0 2345 200 77 39 chr1 99631528 99631885 -143032468 + LTR48B LTR ERV1 251 644 0 343 297 168 20 chr1 99631930 99632132 -143032221 - MIR SINE MIR -29 233 2 187 350 57 24 chr1 99632366 99632489 -143031864 - MIR SINE MIR -38 224 98 2249 96 3 7 chr1 99632526 99632819 -143031534 + AluSp SINE Alu 1 292 -21 1511 168 44 54 chr1 99632919 99633217 -143031136 - AluJo SINE Alu -13 299 5 1307 231 120 24 chr1 99633316 99633692 -143030661 + MER20B DNA MER1_type 82 493 -290 2370 100 3 0 chr1 99633784 99634094 -143030259 - AluSp SINE Alu -2 311 1 2382 95 0 0 chr1 99634528 99634824 -143029529 + AluSx SINE Alu 1 296 -16 419 221 23 46 chr1 99634824 99634955 -143029398 + MER20B DNA MER1_type 518 645 -138 325 243 14 14 chr1 99634955 99635025 -143029328 - MER81 DNA DNA -44 70 1 27 0 0 0 chr1 99635068 99635095 -143029258 + AT_rich Low_complexity Low_complexity 1 27 0 276 310 71 32 chr1 99635120 99635275 -143029078 + MIR SINE MIR 102 262 0 2302 133 44 3 chr1 99635561 99635928 -143028425 + MLT1B LTR MaLR 1 382 -8 386 275 60 70 chr1 99636179 99636379 -143027974 - L2 LINE L2 -2 3311 3114 514 332 20 81 chr1 99636410 99636708 -143027645 - L2 LINE L2 -5 3267 2988 1732 168 24 10 chr1 99637516 99637808 -143026545 + AluJb SINE Alu 1 296 -16 1575 189 33 10 chr1 99638094 99638395 -143025958 - AluJo SINE Alu -4 308 1 2078 88 64 17 chr1 99639077 99639372 -143024981 + AluSc SINE Alu 1 309 0 365 252 8 34 chr1 99639686 99639805 -143024548 + MIR SINE MIR 97 212 -50 235 269 109 31 chr1 99641783 99641932 -143022421 - L1ME4a LINE L1 -152 5969 5833 2135 114 17 0 chr1 99641932 99642222 -143022131 - AluJo SINE Alu -6 306 12 235 269 109 31 chr1 99642222 99642328 -143022025 - L1ME4a LINE L1 -288 5833 5694 2219 88 7 3 chr1 99642371 99642666 -143021687 - AluSq SINE Alu -17 296 1 2324 54 4 0 chr1 99642743 99643020 -143021333 + AluSp SINE Alu 1 278 -35 2028 246 52 30 chr1 99643077 99643420 -143020933 - L1ME1 LINE L1 -5 6161 5827 1505 157 89 32 chr1 99643420 99643701 -143020652 - AluJb SINE Alu -8 304 8 2028 246 52 30 chr1 99643701 99644227 -143020126 - L1ME1 LINE L1 -339 5827 5243 2290 109 3 0 chr1 99644233 99644544 -143019809 - AluSx SINE Alu 0 312 1 688 207 14 0 chr1 99644580 99644720 -143019633 - L1ME1 LINE L1 -864 5282 5141 2095 107 0 10 chr1 99644963 99645252 -143019101 - AluSg SINE Alu -14 296 11 1911 85 85 11 chr1 99646105 99646388 -143017965 - AluSx SINE Alu -8 304 1 1917 53 148 11 chr1 99646907 99647170 -143017183 - AluSg1 SINE Alu -10 299 1 226 145 0 130 chr1 99647209 99647278 -143017075 + MIR SINE MIR 74 133 -129 1979 148 7 3 chr1 99648013 99648316 -143016037 - AluSx SINE Alu -8 304 1 2588 194 27 42 chr1 99648338 99648958 -143015395 - L1MC3 LINE L1 -1 7784 7174 1498 100 5 5 chr1 99648958 99649178 -143015175 - pTR5 LTR ERV1 -2047 391 172 302 224 31 20 chr1 99649181 99649279 -143015074 - LTR30 LTR ERV1 -80 642 544 4277 130 123 39 chr1 99649279 99650253 -143014100 - pTR5 LTR ERV1 -413 2025 743 228 233 117 89 chr1 99650587 99650767 -143013586 + HAL1 LINE L1 2255 2439 -68 213 39 0 0 chr1 99651103 99651129 -143013224 + (A)n Simple_repeat Simple_repeat 1 26 0 210 311 67 33 chr1 99651565 99651655 -143012698 + MER5B DNA MER1_type 84 176 -2 912 174 47 29 chr1 99651945 99652117 -143012236 - AluJb SINE Alu -2 310 136 279 306 116 50 chr1 99652655 99652776 -143011577 - L2 LINE L2 -5 3267 3139 349 291 8 24 chr1 99652889 99653016 -143011337 - 7SK RNA RNA -64 129 5 288 214 167 12 chr1 99653509 99653593 -143010760 + MIR SINE MIR 71 167 -95 875 235 39 13 chr1 99653673 99653907 -143010446 + MIR SINE MIR 23 262 0 1969 107 16 13 chr1 99654211 99654521 -143009832 + AluY SINE Alu 1 311 0 416 318 98 9 chr1 99654883 99655097 -143009256 - L2 LINE L2 -204 3068 2836 251 268 0 0 chr1 99655493 99655549 -143008804 + L2 LINE L2 3258 3313 0 25 51 0 0 chr1 99656375 99656414 -143007939 + AT_rich Low_complexity Low_complexity 1 39 0 1993 153 3 3 chr1 99657416 99657711 -143006642 + AluJo SINE Alu 1 295 -17 180 0 0 0 chr1 99657976 99657996 -143006357 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 720 242 88 23 chr1 99659779 99659994 -143004359 + MIR SINE MIR 19 247 -15 462 227 93 113 chr1 99660015 99660113 -143004240 + MLT1J LTR MaLR 6 104 -407 688 194 16 31 chr1 99660113 99660242 -143004111 + FLAM_A SINE Alu 1 127 -6 1895 144 7 3 chr1 99660244 99660543 -143003810 + AluJb SINE Alu 1 300 -12 462 227 93 113 chr1 99660543 99660688 -143003665 + MLT1J LTR MaLR 105 247 -264 241 204 82 0 chr1 99660807 99660856 -143003497 + MLT1J LTR MaLR 418 470 -41 391 259 171 25 chr1 99660894 99661052 -143003301 + MER5A DNA MER1_type 9 189 0 2067 99 0 18 chr1 99661728 99662011 -143002342 + AluSx SINE Alu 35 312 0 322 287 78 0 chr1 99662077 99662206 -143002147 - L3b LINE CR1 -237 1346 1208 2017 138 7 0 chr1 99662468 99662759 -143001594 + AluSx SINE Alu 1 293 -19 219 313 146 0 chr1 99662853 99662949 -143001404 - MIR SINE MIR -113 149 40 * 247 329 110 18 chr1 99662925 99663089 -143001264 - MIR SINE MIR -39 223 45 516 219 205 7 chr1 99663675 99663826 -143000527 + MER5A DNA MER1_type 9 189 0 499 306 128 47 chr1 99663838 99664522 -142999831 - L2 LINE L2 -208 3064 2316 2271 184 78 0 chr1 99664526 99664913 -142999440 + MER47B DNA MER2_type 2 418 0 291 347 11 11 chr1 99665579 99665674 -142998679 + MER5B DNA MER1_type 84 178 0 757 141 0 101 chr1 99667066 99667215 -142997138 + AluJo SINE Alu 2 135 -177 24 77 0 0 chr1 99668073 99668125 -142996228 + GC_rich Low_complexity Low_complexity 1 52 0 1125 139 0 0 chr1 99669290 99669456 -142994897 + AluSp SINE Alu 137 302 -11 611 197 53 40 chr1 99669596 99669748 -142994605 + MER97a DNA MER1_type? 16 169 -725 2174 107 3 0 chr1 99670078 99670368 -142993985 - AluSg SINE Alu -19 291 1 258 105 0 0 chr1 99672030 99672068 -142992285 + (AGGGGG)n Simple_repeat Simple_repeat 1 38 0 203 365 17 34 chr1 99672245 99672423 -142991930 + MER5B DNA MER1_type 4 178 0 731 268 16 121 chr1 99672497 99672878 -142991475 - L2 LINE L2 -5 3308 2968 1631 172 0 21 chr1 99673118 99673397 -142990956 + AluJo SINE Alu 5 277 -35 1310 274 55 29 chr1 99673539 99673700 -142990653 - L2 LINE L2 -337 2977 2822 1258 146 52 19 chr1 99673700 99673912 -142990441 - MER20 DNA MER1_type 0 219 1 1310 274 55 29 chr1 99673912 99674169 -142990184 - L2 LINE L2 -492 2822 2548 950 110 0 15 chr1 99674218 99674354 -142989999 - AluSp/q SINE Alu -10 303 170 2193 113 0 13 chr1 99674225 99674527 -142989826 - AluSq SINE Alu -15 298 1 193 188 0 83 chr1 99674947 99674995 -142989358 + MIR SINE MIR 216 259 -3 738 196 31 6 chr1 99675283 99675446 -142988907 + MER33 DNA MER1_type 1 167 -157 * 1564 194 31 14 chr1 99675438 99675793 -142988560 - Charlie1 DNA MER1_type -529 2232 1872 2483 66 3 7 chr1 99675795 99676100 -142988253 - AluY SINE Alu -6 305 2 367 306 27 9 chr1 99676407 99676518 -142987835 + MIR3 SINE MIR 89 201 -7 36 53 0 0 chr1 99676570 99676627 -142987726 + AT_rich Low_complexity Low_complexity 1 57 0 1052 113 0 0 chr1 99677238 99677379 -142986974 + AluJb SINE Alu 1 141 -171 189 0 0 0 chr1 99677468 99677489 -142986864 + (T)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr1 99678428 99678454 -142985899 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr1 99682241 99682266 -142982087 + (T)n Simple_repeat Simple_repeat 1 25 0 619 249 24 30 chr1 99682950 99683119 -142981234 + MIR SINE MIR 89 256 -6 1758 184 87 16 chr1 99683519 99683889 -142980464 - MSTD LTR MaLR 0 396 1 1738 175 0 21 chr1 99684370 99684655 -142979698 + AluJb SINE Alu 1 279 -33 470 241 9 26 chr1 99685007 99685123 -142979230 + MIR SINE MIR 94 207 -55 251 247 13 52 chr1 99685495 99685572 -142978781 - L2 LINE L2 -2 3311 3238 1355 144 9 5 chr1 99685702 99685917 -142978436 + AluSg/x SINE Alu 85 300 -10 411 228 32 41 chr1 99687498 99687621 -142976732 - MIR SINE MIR -123 139 18 21 36 0 0 chr1 99687767 99687795 -142976558 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr1 99688485 99688507 -142975846 + (T)n Simple_repeat Simple_repeat 1 22 0 3278 176 42 42 chr1 99688545 99688796 -142975557 + L1MB5 LINE L1 5433 5683 -491 180 0 0 0 chr1 99688796 99688816 -142975537 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1895 142 14 0 chr1 99688819 99689100 -142975253 - AluSx SINE Alu -25 287 3 3278 176 42 42 chr1 99689100 99689578 -142974775 + L1MB5 LINE L1 5684 6166 -8 396 232 0 0 chr1 99689818 99689917 -142974436 - MER113 DNA MER1_type? -410 111 13 2264 68 10 17 chr1 99690750 99691044 -142973309 + AluY SINE Alu 1 292 -19 405 164 0 0 chr1 99691599 99691666 -142972687 + FLAM SINE Alu 64 130 -13 2057 142 0 7 chr1 99692368 99692664 -142971689 + AluJb SINE Alu 3 296 -16 640 242 147 33 chr1 99693068 99693279 -142971074 - MIR SINE MIR -13 249 15 2254 119 0 3 chr1 99693404 99693715 -142970638 + AluSx SINE Alu 3 312 0 1386 71 0 0 chr1 99694923 99695093 -142969260 + AluSg/x SINE Alu 130 299 -13 188 42 42 62 chr1 99695942 99695990 -142968363 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 379 355 149 40 chr1 99696107 99697086 -142967267 + L2 LINE L2 1805 2890 -424 722 250 104 17 chr1 99697849 99698089 -142966264 + MIR SINE MIR 2 262 0 277 327 47 9 chr1 99700188 99700295 -142964058 - L3b LINE CR1 -322 1261 1151 600 256 160 0 chr1 99700664 99700820 -142963533 + MER5A DNA MER1_type 9 189 0 878 199 0 7 chr1 99701413 99701564 -142962789 - FRAM SINE Alu -26 150 1 203 326 0 10 chr1 99701692 99701790 -142962563 + T-rich Low_complexity Low_complexity 4 100 0 960 113 120 0 chr1 99702095 99702237 -142962116 - AluSg/x SINE Alu -26 286 128 322 343 9 19 chr1 99702237 99702345 -142962008 - MER5A DNA MER1_type -35 154 48 183 282 26 39 chr1 99702341 99702419 -142961934 + MER5B DNA MER1_type 76 152 -26 * 205 344 47 0 chr1 99702457 99702521 -142961832 + L2 LINE L2 1863 1929 -1385 307 330 58 47 chr1 99702649 99702753 -142961600 + L2 LINE L2 1962 2063 -1251 1899 115 68 0 chr1 99702753 99703031 -142961322 - AluY SINE Alu -14 297 1 307 330 58 47 chr1 99703031 99703268 -142961085 + L2 LINE L2 2063 2307 -1007 21 0 0 0 chr1 99703280 99703301 -142961052 + AT_rich Low_complexity Low_complexity 1 21 0 192 344 76 19 chr1 99703393 99703550 -142960803 + L2 LINE L2 2599 2764 -550 240 111 0 0 chr1 99703840 99703876 -142960477 + (TG)n Simple_repeat Simple_repeat 1 36 0 380 251 0 15 chr1 99704228 99704432 -142959921 + GA-rich Low_complexity Low_complexity 1 201 0 1810 138 71 3 chr1 99705604 99705887 -142958466 - AluJb SINE Alu -9 303 2 544 323 156 0 chr1 99706863 99707126 -142957227 + L2 LINE L2 2431 2734 -580 211 311 170 7 chr1 99707217 99707352 -142957001 + L2 LINE L2 2873 3029 -243 1814 164 30 0 chr1 99707443 99707741 -142956612 - AluJo SINE Alu 0 312 6 211 297 16 16 chr1 99707755 99707819 -142956534 - MER5A DNA MER1_type -120 69 6 315 81 35 58 chr1 99708253 99708339 -142956014 - L1MB4 LINE L1 0 6180 6097 2077 130 3 10 chr1 99708345 99708644 -142955709 - AluSx SINE Alu -14 298 2 273 216 324 0 chr1 99709965 99710067 -142954286 + MER58C DNA MER1_type 80 214 -1 254 267 29 29 chr1 99710382 99710487 -142953866 + L1MCa LINE L1 1088 1192 -5234 275 299 51 17 chr1 99710551 99710668 -142953685 + L2 LINE L2 3193 3313 0 383 295 63 46 chr1 99710846 99711083 -142953270 + HAL1 LINE L1 1431 1671 -836 437 272 75 0 chr1 99712415 99712562 -142951791 - MLT1J LTR MaLR -30 481 324 2278 68 11 0 chr1 99712575 99712882 -142951471 + AluY SINE Alu 1 310 0 590 256 76 6 chr1 99712930 99713102 -142951251 - MLT1J LTR MaLR -302 209 26 2320 112 0 0 chr1 99713342 99713647 -142950706 + AluSx SINE Alu 3 307 -5 366 270 76 14 chr1 99713974 99714135 -142950218 + L1MC4a LINE L1 5471 5649 -472 349 247 0 0 chr1 99714270 99714351 -142950002 - HsTC2 DNA Tc2 -1783 115 35 448 217 87 9 chr1 99714514 99714629 -142949724 + MLT1J LTR MaLR 26 149 -362 543 237 116 47 chr1 99714650 99714882 -142949471 + L1MC4a LINE L1 5665 5912 -209 340 288 40 16 chr1 99715310 99715435 -142948918 - L2 LINE L2 -926 2388 2261 342 327 90 6 chr1 99715601 99715757 -142948596 + MIR SINE MIR 58 226 -36 207 0 0 0 chr1 99715804 99715827 -142948526 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1013 176 83 10 chr1 99717200 99717404 -142946949 - MER20 DNA MER1_type 0 219 1 329 279 48 54 chr1 99717633 99717780 -142946573 + L2 LINE L2 3127 3272 0 426 325 32 8 chr1 99717921 99718047 -142946306 - L2 LINE L2 0 3272 3144 1296 189 4 9 chr1 99718311 99718539 -142945814 + MER6 DNA MER2_type 32 258 -607 983 297 197 2 chr1 99718948 99719359 -142944994 + L2 LINE L2 2805 3295 -18 308 260 85 56 chr1 99719590 99719950 -142944403 - MLT1L LTR MaLR -11 604 127 467 194 24 65 chr1 99720210 99720334 -142944019 - MIR SINE MIR -127 135 17 2149 118 10 0 chr1 99720415 99720711 -142943642 + AluSx SINE Alu 2 300 -12 343 324 18 9 chr1 99720973 99721084 -142943269 + L2 LINE L2 3149 3260 -12 332 332 93 60 chr1 99721156 99721880 -142942473 - L2 LINE L2 -215 3057 2310 360 111 0 0 chr1 99722141 99722195 -142942158 + (TG)n Simple_repeat Simple_repeat 2 55 0 848 221 13 43 chr1 99723536 99723771 -142940582 + L2 LINE L2 3080 3307 -6 22 0 0 0 chr1 99724968 99724990 -142939363 + AT_rich Low_complexity Low_complexity 1 22 0 562 299 46 28 chr1 99725145 99725362 -142938991 - MIR SINE MIR -1 261 41 2045 125 0 10 chr1 99725420 99725716 -142938637 - AluSx SINE Alu -19 293 1 1745 150 7 7 chr1 99725769 99726043 -142938310 - AluJb SINE Alu -36 276 3 2331 87 0 10 chr1 99726054 99726364 -142937989 - AluY SINE Alu -4 307 1 858 285 27 5 chr1 99726427 99726648 -142937705 + MIR SINE MIR 3 228 -34 2927 126 49 16 chr1 99727408 99727776 -142936577 + MER75 DNA T2_type 1 390 -124 1841 133 106 6 chr1 99727776 99728115 -142936238 + THE1C LTR MaLR 3 375 0 2927 126 49 16 chr1 99728115 99728237 -142936116 + MER75 DNA T2_type 390 507 -7 695 237 35 24 chr1 99728579 99728748 -142935605 - MIR3 SINE MIR -30 178 8 734 267 76 5 chr1 99728765 99728975 -142935378 - MIR SINE MIR 0 262 38 629 329 60 30 chr1 99730033 99730331 -142934022 + L1MEd LINE L1 792 1098 -5021 290 212 12 47 chr1 99730354 99730439 -142933914 - LTR33 LTR ERVL 0 521 440 428 271 72 57 chr1 99730512 99730844 -142933509 + L1MEd LINE L1 2468 2804 -3325 479 299 72 53 chr1 99730864 99731185 -142933168 + L1MEd LINE L1 2878 3204 -2925 588 161 30 107 chr1 99731192 99731360 -142932993 - MIR SINE MIR 0 262 108 243 317 54 21 chr1 99731432 99731672 -142932681 + L1MEd LINE L1 3328 3575 -2554 290 145 0 0 chr1 99731718 99731780 -142932573 - L1MB5 LINE L1 0 6174 6113 * 744 311 71 37 chr1 99731771 99732771 -142931582 + L1MEd LINE L1 3608 4641 -1488 824 209 118 4 chr1 99733102 99733356 -142930997 + Charlie4a DNA MER1_type 119 401 -107 185 0 40 0 chr1 99733360 99733385 -142930968 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 40819 34 21 2 chr1 99733409 99739442 -142924911 - L1PA3 LINE L1 0 6155 3 384 208 40 20 chr1 99739449 99739550 -142924803 + Charlie4a DNA MER1_type 406 508 0 358 296 153 45 chr1 99739550 99739969 -142924384 - L2 LINE L2 -1318 1996 1533 231 36 0 0 chr1 99740342 99740370 -142923983 + (TG)n Simple_repeat Simple_repeat 2 29 0 2912 57 3 3 chr1 99740405 99740776 -142923577 + L1PA7 LINE L1 5784 6154 0 198 103 0 0 chr1 99740964 99740993 -142923360 + (TTC)n Simple_repeat Simple_repeat 2 30 0 647 293 64 32 chr1 99741490 99741835 -142922518 - MARNA DNA Mariner -25 561 206 224 318 56 48 chr1 99741886 99742012 -142922341 - L2 LINE L2 -469 2845 2719 224 259 164 35 chr1 99742062 99742178 -142922175 - L3 LINE CR1 -1123 454 324 381 323 24 8 chr1 99742693 99742817 -142921536 - L2 LINE L2 0 3313 3188 198 336 103 17 chr1 99742887 99743003 -142921350 + L2 LINE L2 2676 2801 -513 250 281 47 0 chr1 99743019 99743083 -142921270 + L2 LINE L2 3247 3313 0 209 311 60 93 chr1 99744007 99744158 -142920195 + MIR3 SINE MIR 2 147 -61 290 226 107 12 chr1 99744250 99744334 -142920019 - MIR SINE MIR -19 243 152 458 205 0 12 chr1 99744410 99744493 -142919860 - AluJ/FLAM SINE Alu -228 84 3 231 114 0 0 chr1 99744703 99744738 -142919615 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 233 368 48 40 chr1 99744859 99744984 -142919369 + L2 LINE L2 2917 3042 -230 691 68 10 10 chr1 99745029 99745132 -142919221 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 1061 65 24 12 chr1 99745391 99745559 -142918794 + (TTTC)n Simple_repeat Simple_repeat 1 170 0 1879 145 10 3 chr1 99745562 99745851 -142918502 - AluJo SINE Alu -21 291 1 366 297 119 35 chr1 99745868 99746178 -142918175 + MLT1I LTR MaLR 47 382 -27 290 264 0 58 chr1 99746250 99746337 -142918016 + L2 LINE L2 3186 3267 -5 308 128 51 0 chr1 99746532 99746610 -142917743 + (TA)n Simple_repeat Simple_repeat 1 82 0 688 358 107 25 chr1 99746932 99747720 -142916633 + L2 LINE L2 693 1544 -1770 554 320 73 49 chr1 99747780 99748148 -142916205 - L2 LINE L2 -1156 2158 1774 2275 108 7 3 chr1 99748148 99748454 -142915899 + AluSc SINE Alu 1 307 -2 554 320 73 49 chr1 99748454 99748576 -142915777 - L2 LINE L2 -1540 1774 1656 2428 91 0 0 chr1 99748656 99748964 -142915389 - AluY SINE Alu -3 308 1 400 371 24 21 chr1 99748966 99749300 -142915053 + L2 LINE L2 2149 2483 -831 408 237 137 29 chr1 99749417 99749556 -142914797 + L2 LINE L2 3158 3311 -2 372 294 34 20 chr1 99749597 99749743 -142914610 - MIR SINE MIR -59 203 56 189 121 0 0 chr1 99749942 99749975 -142914378 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 500 279 168 0 chr1 99749983 99750180 -142914173 + MIR SINE MIR 33 262 0 430 292 146 0 chr1 99750598 99750742 -142913611 - MIR SINE MIR -17 245 81 382 331 13 13 chr1 99750920 99751074 -142913279 - MER5A DNA MER1_type -10 179 26 304 261 11 0 chr1 99751997 99752089 -142912264 - L1MA9 LINE L1 -225 6087 5995 552 98 70 0 chr1 99752108 99752328 -142912025 + (TA)n Simple_repeat Simple_repeat 1 235 0 539 134 35 24 chr1 99752358 99752491 -142911862 - L1MB1 LINE L1 -237 5927 5793 6882 58 7 9 chr1 99752493 99753058 -142911295 + L1MB1 LINE L1 5215 5779 -375 2468 66 0 3 chr1 99753058 99753359 -142910994 + AluY SINE Alu 1 300 -11 6882 58 7 9 chr1 99753359 99753727 -142910626 + L1PA7 LINE L1 5779 6146 -8 2539 173 31 11 chr1 99754063 99754602 -142909751 - L1MB1 LINE L1 -509 5803 5254 5574 183 18 18 chr1 99754609 99755882 -142908471 - L1MB1 LINE L1 -1416 4730 3457 1759 184 0 7 chr1 99755882 99756181 -142908172 - AluJo SINE Alu -15 297 1 5574 183 18 18 chr1 99756181 99756219 -142908134 - L1MB1 LINE L1 -2689 3457 3420 6562 33 4 0 chr1 99756261 99757045 -142907308 + L1PA4 LINE L1 5367 6153 -2 378 271 53 53 chr1 99757233 99757384 -142906969 + L2 LINE L2 2573 2723 -591 302 301 0 0 chr1 99757386 99757459 -142906894 + L2 LINE L2 3237 3309 -4 485 353 43 62 chr1 99757554 99757922 -142906431 + L2 LINE L2 2844 3204 -68 529 300 74 5 chr1 99758195 99758385 -142905968 + L2 LINE L2 2551 2753 -561 181 422 12 0 chr1 99758332 99758415 -142905938 - MIR SINE MIR -80 128 45 * 314 187 0 56 chr1 99759552 99759605 -142904748 - L1MC4 LINE L1 0 8042 7996 1776 179 14 10 chr1 99759605 99759902 -142904451 - AluJb SINE Alu -14 298 1 314 187 0 56 chr1 99759902 99759955 -142904398 - L1MC4 LINE L1 -46 7996 7942 192 40 0 0 chr1 99759993 99760018 -142904335 + (TC)n Simple_repeat Simple_repeat 2 26 0 188 243 14 0 chr1 99760018 99760092 -142904261 + (TA)n Simple_repeat Simple_repeat 1 75 0 4287 205 21 74 chr1 99760100 99760273 -142904080 - L1MC4 LINE L1 -144 7898 7717 1874 150 116 0 chr1 99760273 99760634 -142903719 - MER57A LTR ERV1 0 403 1 4287 205 21 74 chr1 99760634 99761704 -142902649 - L1MC4 LINE L1 -325 7717 6721 276 247 35 0 chr1 99762272 99762357 -142901996 + MER103 DNA DNA 77 164 -2 2084 106 25 0 chr1 99762848 99763131 -142901222 - AluSg SINE Alu -20 290 1 311 345 35 0 chr1 99765514 99765630 -142898723 - L2 LINE L2 -1 3312 3193 598 250 8 0 chr1 99765639 99765763 -142898590 - MER58A DNA MER1_type 0 125 1 244 294 20 39 chr1 99765939 99766041 -142898312 - L2 LINE L2 -266 3006 2907 578 292 26 63 chr1 99766041 99766466 -142897887 + MLT1I LTR MaLR 1 409 0 196 360 0 13 chr1 99766895 99766970 -142897383 + MIR3 SINE MIR 11 84 -124 345 259 107 38 chr1 99767197 99767328 -142897025 - MIR3 SINE MIR -67 141 2 2607 139 28 12 chr1 99768268 99768693 -142895660 + Tigger2a DNA MER2_type 1 432 -2 1007 223 143 17 chr1 99769263 99769550 -142894803 - MLT2B3 LTR ERVL -227 327 5 359 276 105 19 chr1 99769644 99769854 -142894499 + LTR33A LTR ERVL 178 405 -118 2012 164 20 0 chr1 99771354 99771695 -142892658 - MER7A DNA MER2_type 0 346 1 267 275 123 0 chr1 99771812 99771950 -142892403 + L1MC4a LINE L1 3791 3945 -2201 559 324 50 62 chr1 99772081 99772341 -142892012 + L1MC4a LINE L1 4048 4303 -1843 1881 158 39 0 chr1 99772341 99772625 -142891728 - AluJb SINE Alu -17 295 1 559 324 50 62 chr1 99772625 99772784 -142891569 + L1MC4a LINE L1 4303 4462 -1684 7550 39 0 0 chr1 99772850 99774553 -142889800 + L1PA4 LINE L1 4452 6155 0 370 268 55 0 chr1 99774659 99774842 -142889511 + L1MC4a LINE L1 4467 4659 -1487 25 75 0 0 chr1 99774979 99775032 -142889321 + AT_rich Low_complexity Low_complexity 1 53 0 422 290 43 27 chr1 99775463 99775649 -142888704 + L1MC4a LINE L1 5465 5653 -468 241 114 13 76 chr1 99775666 99775745 -142888608 + (TA)n Simple_repeat Simple_repeat 2 75 0 458 299 33 78 chr1 99775792 99775914 -142888439 + L1MC4a LINE L1 5700 5826 -295 2495 57 7 0 chr1 99775914 99776214 -142888139 + AluY SINE Alu 1 302 -9 458 299 33 78 chr1 99776214 99776422 -142887931 + L1MC4a LINE L1 5826 6017 -104 2104 97 7 0 chr1 99776476 99776745 -142887608 + AluSq SINE Alu 35 305 -8 1071 273 74 34 chr1 99776939 99777346 -142887007 + LTR16C LTR ERVL 69 491 0 291 191 0 0 chr1 99777716 99777779 -142886574 + (TG)n Simple_repeat Simple_repeat 1 63 0 2189 105 3 7 chr1 99779552 99779848 -142884505 - AluSx SINE Alu -17 295 1 294 214 186 0 chr1 99779858 99779928 -142884425 + MIR SINE MIR 110 192 -70 434 342 89 9 chr1 99780468 99780693 -142883660 - MIR SINE MIR -11 251 9 285 256 12 35 chr1 99780828 99780914 -142883439 - L2 LINE L2 0 3272 3189 24 0 0 0 chr1 99783037 99783061 -142881292 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 99783911 99783933 -142880420 + AT_rich Low_complexity Low_complexity 1 22 0 1384 250 32 66 chr1 99786278 99786911 -142877442 - L1MC4a LINE L1 -1869 5939 5329 33 0 0 0 chr1 99787487 99787520 -142876833 + AT_rich Low_complexity Low_complexity 1 33 0 1523 172 54 21 chr1 99787522 99787801 -142876552 - AluJo SINE Alu -24 288 1 404 175 42 8 chr1 99788164 99788293 -142876060 - L1ME1 LINE L1 -328 5838 5707 198 197 0 115 chr1 99788354 99788415 -142875938 - MIR SINE MIR -126 136 83 583 160 160 0 chr1 99888767 99888873 -142775480 - AluJb SINE Alu -24 288 166 678 257 36 72 chr1 99889046 99889203 -142775150 + L1ME3A LINE L1 5894 6038 -132 2382 101 0 0 chr1 99889203 99889511 -142774842 - AluSg SINE Alu -2 308 1 678 257 36 72 chr1 99889511 99889629 -142774724 + L1ME3A LINE L1 6038 6159 -11 226 240 0 0 chr1 99890353 99890403 -142773950 + L1ME4a LINE L1 5633 5682 -439 496 296 89 12 chr1 99890405 99890574 -142773779 + MER5A DNA MER1_type 7 188 -1 370 255 78 31 chr1 99890575 99890767 -142773586 + L1ME4a LINE L1 5685 5885 -236 266 274 77 0 chr1 99890817 99890934 -142773419 + L1ME4a LINE L1 5989 6114 -7 429 304 106 30 chr1 99893088 99893325 -142771028 - MIR SINE MIR -4 258 4 304 310 3 6 chr1 99893516 99893623 -142770730 + MIR SINE MIR 19 124 -84 313 324 142 0 chr1 99893798 99893946 -142770407 - MER117 DNA MER1_type -26 171 3 446 276 30 0 chr1 99894161 99894295 -142770058 - MIR SINE MIR -55 207 70 332 116 43 0 chr1 99894736 99894805 -142769548 - L1PB4 LINE L1 -1 6155 6084 477 191 35 35 chr1 99894821 99894936 -142769417 - MLT1G LTR MaLR -24 566 452 229 188 45 125 chr1 99895703 99895815 -142768538 - L2 LINE L2 -2 3270 3168 2018 88 10 41 chr1 99895837 99896131 -142768222 + AluSx SINE Alu 1 285 -27 349 167 0 69 chr1 99896420 99896492 -142767861 + MER5A DNA MER1_type 9 75 -114 2487 164 24 14 chr1 99896571 99897066 -142767287 + L1MA4 LINE L1 5800 6299 -1 237 167 345 12 chr1 99897078 99897162 -142767191 + MER5A DNA MER1_type 78 189 0 240 326 63 11 chr1 99897213 99897308 -142767045 + L2 LINE L2 3153 3252 -20 474 287 59 51 chr1 99898429 99898683 -142765670 + MIR SINE MIR 1 256 -6 395 197 26 0 chr1 99898836 99898912 -142765441 - AluJ/FLAM SINE Alu -224 78 1 8619 114 20 6 chr1 99899268 99900537 -142763816 + HSMAR1 DNA Mariner 1 1287 0 406 235 104 0 chr1 99901472 99901587 -142762766 + MIR SINE MIR 40 166 -96 394 312 26 63 chr1 99901876 99902065 -142762288 - MER5A DNA MER1_type -7 182 1 354 289 25 31 chr1 99904151 99904310 -142760043 + L1ME3A LINE L1 5963 6120 -50 863 237 53 0 chr1 99904327 99904534 -142759819 - MER20 DNA MER1_type 0 219 2 22 0 0 0 chr1 99906246 99906268 -142758085 + AT_rich Low_complexity Low_complexity 1 22 0 1946 162 0 7 chr1 99906542 99906844 -142757509 - AluJb SINE Alu -8 304 5 3843 163 26 20 chr1 99907359 99908047 -142756306 + L1MA2 LINE L1 20 711 -6854 26 30 0 0 chr1 99908556 99908589 -142755764 + AT_rich Low_complexity Low_complexity 1 33 0 14035 189 49 14 chr1 99908603 99908953 -142755400 + L1MA2 LINE L1 2863 3199 -4524 210 91 0 0 chr1 99908953 99908986 -142755367 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 14035 189 49 14 chr1 99908986 99912861 -142751492 + L1MA2 LINE L1 3199 7251 -472 740 174 0 0 chr1 99912861 99912978 -142751375 + L1MA2 LINE L1 7592 7723 0 21 0 0 0 chr1 99912978 99912999 -142751354 + AT_rich Low_complexity Low_complexity 1 21 0 302 275 0 70 chr1 99914493 99914608 -142749745 - MIR SINE MIR -63 145 66 188 318 129 12 chr1 99914835 99914920 -142749433 - L2 LINE L2 -20 3293 3199 1534 189 3 40 chr1 99915640 99915936 -142748417 + AluJo SINE Alu 1 285 -27 604 251 77 16 chr1 99916125 99916372 -142747981 - L1MA9 LINE L1 -38 6274 6013 * 5775 194 46 8 chr1 99916364 99917019 -142747334 - L1 LINE L1 -1062 6503 5781 1842 162 0 13 chr1 99917019 99917036 -142747317 - AluSx SINE Alu -13 299 283 273 29 0 0 chr1 99917036 99917070 -142747283 + (TG)n Simple_repeat Simple_repeat 1 34 0 1842 162 0 13 chr1 99917070 99917355 -142746998 - AluSx SINE Alu -29 283 1 5775 194 46 8 chr1 99917355 99917893 -142746460 - L1 LINE L1 -1784 5781 5265 3463 252 29 25 chr1 99917883 99919762 -142744591 - L1 LINE L1 -3233 4332 2462 * 1769 158 4 7 chr1 99919762 99920034 -142744319 + AluSx SINE Alu 5 275 -37 183 42 0 0 chr1 99920037 99920061 -142744292 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3463 252 29 25 chr1 99920061 99920302 -142744051 - L1 LINE L1 -5104 2461 2190 783 286 75 9 chr1 99921242 99921469 -142742884 - MIR SINE MIR -1 261 20 40 49 0 0 chr1 99922309 99922370 -142741983 + AT_rich Low_complexity Low_complexity 1 61 0 519 244 52 70 chr1 99923296 99923509 -142740844 - MER58C DNA MER1_type -3 212 4 1640 250 42 14 chr1 99923550 99924197 -142740156 - L1M4 LINE L1 -2724 3422 2758 1383 295 76 19 chr1 99924628 99925244 -142739109 + L1ME1 LINE L1 30 686 -5710 207 0 0 0 chr1 99925244 99925267 -142739086 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1383 295 76 19 chr1 99925267 99925291 -142739062 + L1ME1 LINE L1 686 707 -5689 * 2304 232 61 34 chr1 99925288 99926717 -142737636 + L1ME1 LINE L1 4773 6230 -5 2194 81 0 37 chr1 99926904 99927226 -142737127 + AluY SINE Alu 1 310 -1 293 232 10 40 chr1 99927226 99927325 -142737028 - L1M LINE L1 -2408 5400 5305 393 55 0 0 chr1 99927359 99927414 -142736939 + L1PA6 LINE L1 6098 6152 -2 25 31 0 0 chr1 99927414 99927446 -142736907 + AT_rich Low_complexity Low_complexity 1 32 0 502 168 0 53 chr1 99927455 99927568 -142736785 - L1PA15 LINE L1 0 6165 6059 1863 251 79 15 chr1 99927706 99928444 -142735909 - L1 LINE L1 -2609 3537 2753 1010 312 28 10 chr1 99928439 99928836 -142735517 - L1PA12 LINE L1 -4996 2585 2182 * 2263 103 0 7 chr1 99928925 99929226 -142735127 - AluSg SINE Alu -10 300 2 389 273 0 36 chr1 99929370 99929480 -142734873 - L1PA12 LINE L1 -5392 2189 2084 1343 320 17 38 chr1 99929575 99930216 -142734137 - L1PA12 LINE L1 -6170 1404 1 422 305 48 32 chr1 99930248 99930435 -142733918 - MLT1I LTR MaLR -157 252 63 775 261 114 44 chr1 99930672 99931013 -142733340 - MER115 DNA AcHobo -1 692 328 1950 151 7 3 chr1 99931380 99931684 -142732669 + AluSx SINE Alu 1 305 -7 447 115 0 26 chr1 99931693 99931771 -142732582 + L1MA6 LINE L1 6032 6107 -193 751 255 77 87 chr1 99931907 99932311 -142732042 - MLT1I LTR MaLR -9 400 1 3154 212 34 30 chr1 99933027 99933894 -142730459 - L1ME1 LINE L1 -9 6157 5287 21 36 0 0 chr1 99933898 99933926 -142730427 + AT_rich Low_complexity Low_complexity 1 28 0 1139 270 84 10 chr1 99933987 99934402 -142729951 - L1MC4 LINE L1 -154 7888 7443 419 221 89 25 chr1 99934425 99934441 -142729912 - L1MA10 LINE L1 0 6334 6319 2893 213 61 16 chr1 99934441 99935212 -142729141 - L1ME1 LINE L1 -5 6161 5356 930 277 121 41 chr1 99935776 99936166 -142728187 + MLT1J2 LTR MaLR 30 450 0 261 243 15 29 chr1 99936362 99936498 -142727855 + (TTAAA)n Simple_repeat Simple_repeat 3 136 0 389 298 142 24 chr1 99937024 99937229 -142727124 - MIR SINE MIR -14 248 20 237 33 0 0 chr1 99937252 99937282 -142727071 + (TG)n Simple_repeat Simple_repeat 1 30 0 674 125 62 23 chr1 99937532 99937660 -142726693 - THE1C LTR MaLR -240 135 3 23 0 0 0 chr1 99939029 99939052 -142725301 + AT_rich Low_complexity Low_complexity 1 23 0 1556 161 88 28 chr1 99940210 99940564 -142723789 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr1 99940798 99940819 -142723534 + AT_rich Low_complexity Low_complexity 1 21 0 396 295 128 7 chr1 99943042 99943191 -142721162 + MIR SINE MIR 28 194 -68 255 265 0 29 chr1 99944570 99944672 -142719681 + CT-rich Low_complexity Low_complexity 2 100 0 2040 122 162 5 chr1 99945548 99945918 -142718435 + MSTA LTR MaLR 1 428 0 220 333 91 59 chr1 99946463 99946682 -142717671 + L2 LINE L2 2596 2821 -493 337 282 64 27 chr1 99947008 99947118 -142717235 + MIR SINE MIR 32 145 -63 382 268 89 58 chr1 99947374 99947564 -142716789 - MIR SINE MIR -65 197 2 929 244 24 53 chr1 99947688 99948028 -142716325 + L2 LINE L2 2984 3313 0 2257 92 0 0 chr1 99948202 99948497 -142715856 + AluSc SINE Alu 1 295 -14 26 0 0 0 chr1 99948573 99948599 -142715754 + AT_rich Low_complexity Low_complexity 1 26 0 406 322 168 0 chr1 99948800 99949002 -142715351 + MIR SINE MIR 2 237 -25 391 345 108 76 chr1 99949030 99949427 -142714926 + L2 LINE L2 2863 3272 0 23 33 0 0 chr1 99950994 99951024 -142713329 + AT_rich Low_complexity Low_complexity 1 30 0 502 362 85 28 chr1 99952657 99953116 -142711237 - MLT1K LTR MaLR -64 524 40 2207 117 3 0 chr1 99953761 99954059 -142710294 - AluSq SINE Alu -14 299 1 209 105 0 26 chr1 99954332 99954370 -142709983 + (GAA)n Simple_repeat Simple_repeat 2 38 0 328 277 128 0 chr1 99955135 99955229 -142709124 + MIR SINE MIR 63 168 -94 31 26 0 0 chr1 99957633 99957671 -142706682 + AT_rich Low_complexity Low_complexity 1 38 0 1488 162 84 1 chr1 99957900 99958174 -142706179 - MER1B DNA MER1_type 0 339 1 927 70 78 0 chr1 99958189 99958318 -142706035 - MER85 DNA T2_type 0 139 1 27 29 0 0 chr1 99959069 99959103 -142705250 + AT_rich Low_complexity Low_complexity 1 34 0 195 42 0 0 chr1 99960921 99960945 -142703408 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 1271 271 87 56 chr1 99961070 99961968 -142702385 - L2 LINE L2 -37 3276 2359 202 359 68 8 chr1 99961992 99962109 -142702244 - L2 LINE L2 -20 3293 3170 391 225 22 185 chr1 99962605 99962881 -142701472 - MIR SINE MIR -24 238 8 1995 128 14 0 chr1 99964374 99964670 -142699683 - AluSx SINE Alu -12 300 1 2634 106 8 11 chr1 99965711 99966087 -142698266 + THE1C LTR MaLR 1 375 0 366 386 74 17 chr1 99967847 99968264 -142696089 - L2 LINE L2 -648 2666 2226 243 298 50 25 chr1 99968899 99969020 -142695333 + MIR SINE MIR 80 203 -59 623 178 8 8 chr1 99969122 99969240 -142695113 - FLAM_C SINE Alu -15 118 1 408 283 33 0 chr1 99969609 99969729 -142694624 - MLT1I LTR MaLR -17 392 269 648 159 53 0 chr1 99969752 99969884 -142694469 - L1PA16 LINE L1 -9 6157 6019 228 135 0 0 chr1 99970772 99970809 -142693544 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 183 42 0 0 chr1 99971035 99971059 -142693294 + (TG)n Simple_repeat Simple_repeat 2 25 0 1065 257 29 4 chr1 99972134 99972379 -142691974 - MIR SINE MIR -10 252 2 1107 176 0 42 chr1 99973381 99973642 -142690711 - pTR5 LTR ERV1 -1446 992 743 926 177 0 18 chr1 99973730 99973894 -142690459 - Tigger1 DNA MER2_type -1 2417 2257 1002 180 5 11 chr1 99974099 99974288 -142690065 + L1PA15 LINE L1 5577 5764 -401 1352 166 4 4 chr1 99974298 99974539 -142689814 + L1PA15 LINE L1 5925 6165 0 241 225 22 34 chr1 99974628 99974717 -142689636 - L1ME LINE L1 -687 5434 5347 12008 150 97 19 chr1 99974724 99976966 -142687387 - Tigger1 DNA MER2_type 0 2418 2 1687 174 0 10 chr1 99977013 99977301 -142687052 + AluJb SINE Alu 2 286 -26 29 28 0 0 chr1 99977302 99977338 -142687015 + AT_rich Low_complexity Low_complexity 1 36 0 789 353 76 21 chr1 99977339 99978053 -142686300 - L2 LINE L2 -214 3099 2355 337 355 0 42 chr1 99978161 99978378 -142685975 - MIR SINE MIR -45 217 10 2052 98 22 32 chr1 99978850 99979166 -142685187 + AluSp SINE Alu 1 313 0 2357 109 0 0 chr1 99979335 99979639 -142684714 + AluSx SINE Alu 1 304 -8 4861 236 32 104 chr1 99980054 99980492 -142683861 - L1M2a LINE L1 -5410 1758 1290 996 243 143 36 chr1 99980492 99980850 -142683503 - MSTD LTR MaLR 0 396 1 4861 236 32 104 chr1 99980850 99982193 -142682160 - L1M2a LINE L1 -5878 1290 104 5069 150 34 8 chr1 99982294 99983795 -142680558 - L1PA13 LINE L1 -31 6132 4597 260 27 27 0 chr1 99983929 99983966 -142680387 + (TG)n Simple_repeat Simple_repeat 2 39 0 441 307 70 42 chr1 99984008 99984321 -142680032 + L1MC4a LINE L1 2272 2593 -3553 1767 146 8 0 chr1 99984356 99984624 -142679729 + AluSx SINE Alu 9 278 -34 254 89 0 0 chr1 99984643 99984688 -142679665 - LTR66 LTR ERVL -172 438 394 228 133 0 0 chr1 99984653 99984698 -142679655 + LTR66 LTR ERVL 395 439 -171 * 686 313 111 58 chr1 99984868 99985771 -142678582 + L1MC4a LINE L1 2915 3865 -2281 2169 107 0 0 chr1 99985787 99986085 -142678268 + AluSx SINE Alu 1 298 -14 282 268 14 58 chr1 99986270 99986408 -142677945 + L1MC4a LINE L1 4123 4254 -1892 991 223 13 35 chr1 99987913 99988142 -142676211 + MER58A DNA MER1_type 1 224 0 180 0 0 0 chr1 99988388 99988408 -142675945 + (T)n Simple_repeat Simple_repeat 1 20 0 226 281 135 0 chr1 99988410 99988506 -142675847 - Charlie3 DNA MER1_type -297 2413 2305 794 300 51 16 chr1 99989382 99989635 -142674718 - MIR SINE MIR 0 262 1 460 289 105 65 chr1 99989713 99990038 -142674315 + LTR67 LTR ERVL 218 555 -2 852 330 51 64 chr1 99990155 99990937 -142673416 - L2 LINE L2 -631 2683 1912 1997 136 3 20 chr1 99992068 99992370 -142671983 - AluSx SINE Alu -15 297 1 369 343 0 0 chr1 99992921 99993026 -142671327 - L2 LINE L2 0 3272 3168 232 298 51 56 chr1 99993169 99993384 -142670969 + L1MC4a LINE L1 4906 5119 -1027 955 196 68 14 chr1 99993385 99993715 -142670638 - MLT1E1 LTR MaLR -170 423 53 5107 124 3 8 chr1 99993777 99994545 -142669808 + L1PA15 LINE L1 5402 6165 0 25 31 0 0 chr1 99994554 99994586 -142669767 + AT_rich Low_complexity Low_complexity 1 32 0 417 37 0 0 chr1 99994586 99994640 -142669713 - L1PA6 LINE L1 -3 6151 6098 963 252 140 62 chr1 99994674 99994785 -142669568 + L1MC4a LINE L1 5305 5406 -2402 2382 41 41 3 chr1 99994785 99995080 -142669273 - AluY SINE Alu -5 306 1 963 252 140 62 chr1 99995080 99995598 -142668755 + L1MC4a LINE L1 5406 5983 -1825 189 74 0 0 chr1 99995669 99995696 -142668657 + (TAGG)n Simple_repeat Simple_repeat 4 30 0 318 275 104 72 chr1 99996126 99996348 -142668005 + HAL1 LINE L1 12 240 -2267 371 221 26 0 chr1 99996449 99996526 -142667827 + MER5A DNA MER1_type 26 104 -85 504 304 80 21 chr1 99996585 99996911 -142667442 + HAL1 LINE L1 361 705 -1802 1325 153 9 0 chr1 99996966 99997181 -142667172 + U3 snRNA snRNA 1 217 0 585 262 51 38 chr1 99997385 99997622 -142666731 + L1MC4a LINE L1 5681 5920 -1888 316 329 89 59 chr1 99997975 99998516 -142665837 + L2 LINE L2 2334 2890 -424 1487 158 4 12 chr1 99998578 99998831 -142665522 - AluJo SINE Alu -2 310 60 343 232 0 0 chr1 99998938 99999007 -142665346 + L2 LINE L2 3203 3271 -1 2251 107 0 0 chr1 99999415 99999704 -142664649 + AluSg SINE Alu 1 289 -21 417 252 120 84 chr1 100001794 100001959 -142662394 + MIR SINE MIR 4 182 -80 2018 122 10 10 chr1 100001959 100002255 -142662098 + AluSx SINE Alu 1 296 -16 417 252 120 84 chr1 100002255 100002339 -142662014 + MIR SINE MIR 182 262 0 461 264 91 0 chr1 100002424 100002534 -142661819 + MIR3 SINE MIR 41 160 -48 885 272 0 13 chr1 100002894 100003129 -142661224 + L2 LINE L2 2398 2629 -685 1510 286 115 34 chr1 100003145 100004445 -142659908 - L1MEc LINE L1 -3873 2523 1119 560 284 54 106 chr1 100005347 100005847 -142658506 + L2 LINE L2 2445 2918 -396 537 286 0 14 chr1 100005865 100006005 -142658348 + L2 LINE L2 3176 3313 0 201 175 0 0 chr1 100006432 100006472 -142657881 + (TG)n Simple_repeat Simple_repeat 1 40 0 229 156 0 0 chr1 100006472 100006517 -142657836 - LTR66 LTR ERVL -172 438 394 208 154 39 19 chr1 100006519 100006571 -142657782 + (TA)n Simple_repeat Simple_repeat 1 53 0 288 270 6 11 chr1 100006665 100006843 -142657510 + (TA)n Simple_repeat Simple_repeat 1 177 0 257 43 109 0 chr1 100006909 100006955 -142657398 + LTR66 LTR ERVL 389 439 -171 279 265 0 12 chr1 100006962 100007045 -142657308 + (TA)n Simple_repeat Simple_repeat 1 82 0 288 0 0 0 chr1 100007750 100007782 -142656571 + (GTTTG)n Simple_repeat Simple_repeat 1 32 0 421 228 126 16 chr1 100008373 100008500 -142655853 + Charlie8 DNA MER1_type 1 141 -2276 1873 158 7 3 chr1 100008501 100008805 -142655548 + AluJb SINE Alu 1 305 -7 324 278 26 115 chr1 100008808 100008999 -142655354 + MER91A DNA MER1_type 11 184 -12 368 279 129 7 chr1 100009309 100009456 -142654897 + MIR SINE MIR 78 242 -20 330 248 156 18 chr1 100009566 100009675 -142654678 + L2 LINE L2 3190 3313 0 438 187 0 0 chr1 100009968 100010059 -142654294 + L1MA4 LINE L1 6191 6281 -19 21 0 0 0 chr1 100010300 100010321 -142654032 + AT_rich Low_complexity Low_complexity 1 21 0 820 153 0 23 chr1 100011926 100012057 -142652296 - FLAM_A SINE Alu -4 129 2 260 308 76 61 chr1 100012491 100012689 -142651664 + L2 LINE L2 3112 3312 -1 1553 225 138 47 chr1 100012816 100013358 -142650995 - MLT1E LTR MaLR 0 593 2 650 312 57 19 chr1 100013362 100013676 -142650677 - LTR16C LTR ERVL -11 480 155 38 22 0 0 chr1 100013890 100013935 -142650418 + AT_rich Low_complexity Low_complexity 1 45 0 9581 232 62 32 chr1 100014209 100017869 -142646484 + L1MDb LINE L1 762 4574 -2045 2007 144 9 18 chr1 100017869 100018208 -142646145 + MER1B DNA MER1_type 1 336 -1 9581 232 62 32 chr1 100018208 100019646 -142644707 + L1MDb LINE L1 4574 5967 -652 865 347 28 12 chr1 100019668 100019991 -142644362 + LTR16A LTR ERVL 123 450 0 237 33 0 0 chr1 100020311 100020341 -142644012 + (TA)n Simple_repeat Simple_repeat 2 31 0 1742 164 0 24 chr1 100020351 100020643 -142643710 + AluJo SINE Alu 1 285 -27 446 75 15 0 chr1 100020643 100020710 -142643643 + (CATA)n Simple_repeat Simple_repeat 4 71 0 905 230 85 26 chr1 100022328 100022598 -142641755 + AluJb SINE Alu 2 287 -15 1782 204 73 23 chr1 100022821 100023261 -142641092 - LTR40b LTR ERVL 0 462 1 2925 179 30 16 chr1 100023406 100023965 -142640388 - MLT1F1 LTR MaLR 0 567 1 11258 157 28 62 chr1 100024123 100024438 -142639915 - Tigger1 DNA MER2_type -1 2417 2093 1741 178 0 7 chr1 100024438 100024719 -142639634 - AluJb SINE Alu -28 284 6 11258 157 28 62 chr1 100024719 100025024 -142639329 - Tigger1 DNA MER2_type -325 2093 1779 2778 3 0 7 chr1 100025024 100025331 -142639022 - AluYa5 SINE Alu -6 305 1 11258 157 28 62 chr1 100025331 100025730 -142638623 - Tigger1 DNA MER2_type -639 1779 1368 2066 103 64 0 chr1 100025730 100026012 -142638341 + AluSg SINE Alu 1 300 -10 11258 157 28 62 chr1 100026012 100027490 -142636863 - Tigger1 DNA MER2_type -1050 1368 4 662 308 72 56 chr1 100027924 100028139 -142636214 - L2 LINE L2 -678 2636 2426 482 248 9 0 chr1 100028139 100028252 -142636101 - MER81 DNA DNA 0 114 1 662 308 72 56 chr1 100028252 100028702 -142635651 - L2 LINE L2 -888 2426 1960 1570 107 9 0 chr1 100028955 100029170 -142635183 - AluSq SINE Alu 0 313 97 353 222 120 9 chr1 100029272 100029380 -142634973 - MIR SINE MIR -6 256 137 844 11 0 0 chr1 100032182 100032376 -142631977 + AluY SINE Alu 191 384 0 25 65 0 0 chr1 100032571 100032617 -142631736 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr1 100033491 100033514 -142630839 + AT_rich Low_complexity Low_complexity 1 23 0 259 238 32 0 chr1 100035148 100035211 -142629142 + A-rich Low_complexity Low_complexity 2 66 0 21 23 0 47 chr1 100037058 100037073 -142627280 + AT_rich Low_complexity Low_complexity 1 15 -26 2238 103 0 3 chr1 100037073 100037363 -142626990 + AluSx SINE Alu 1 289 -23 21 23 0 47 chr1 100037363 100037390 -142626963 + AT_rich Low_complexity Low_complexity 15 41 0 30 27 0 0 chr1 100037409 100037446 -142626907 + AT_rich Low_complexity Low_complexity 1 37 0 192 340 39 0 chr1 100037468 100037571 -142626782 - L2 LINE L2 -12 3301 3195 2407 84 3 0 chr1 100037789 100038087 -142626266 - AluY SINE Alu -12 299 1 1017 161 54 74 chr1 100038147 100038389 -142625964 - AluJo SINE Alu -75 237 1 1732 157 52 0 chr1 100038424 100038710 -142625643 - AluJb SINE Alu -9 303 3 879 198 6 6 chr1 100042044 100042201 -142622152 + AluJb SINE Alu 122 278 -34 405 0 0 0 chr1 100042201 100042246 -142622107 + (TC)n Simple_repeat Simple_repeat 2 46 0 600 94 28 0 chr1 100042246 100042352 -142622001 + (TA)n Simple_repeat Simple_repeat 2 110 0 1945 161 0 7 chr1 100042453 100042751 -142621602 - AluJb SINE Alu -14 298 3 228 361 0 0 chr1 100043244 100043305 -142621048 + L3b LINE CR1 1510 1570 -13 783 169 17 11 chr1 100048421 100048598 -142615755 + GA-rich Low_complexity Low_complexity 3 180 0 219 116 23 47 chr1 100051141 100051184 -142613169 + CT-rich Low_complexity Low_complexity 2 43 0 22 35 0 0 chr1 100054234 100054263 -142610090 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr1 100054387 100054409 -142609944 + (T)n Simple_repeat Simple_repeat 1 22 0 189 121 0 0 chr1 100056042 100056075 -142608278 + (CGG)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr1 100056110 100056135 -142608218 + GC_rich Low_complexity Low_complexity 1 25 0 257 325 0 0 chr1 100056717 100056799 -142607554 + G-rich Low_complexity Low_complexity 1 82 0 231 191 0 0 chr1 100057049 100057112 -142607241 + GA-rich Low_complexity Low_complexity 2 64 0 46 54 0 0 chr1 100057212 100057286 -142607067 + GC_rich Low_complexity Low_complexity 1 74 0 243 0 0 0 chr1 100058721 100058748 -142605605 + (A)n Simple_repeat Simple_repeat 1 27 0 187 309 118 45 chr1 100061441 100061631 -142602722 + MIR3 SINE MIR 14 212 -50 181 300 20 0 chr1 100061752 100061802 -142602551 - L2 LINE L2 0 3313 3263 336 102 0 0 chr1 100068010 100068059 -142596294 + (GGA)n Simple_repeat Simple_repeat 1 49 0 25 0 0 0 chr1 100068515 100068540 -142595813 + AT_rich Low_complexity Low_complexity 1 25 0 211 196 0 0 chr1 100069744 100069790 -142594563 + (CCG)n Simple_repeat Simple_repeat 3 48 0 198 103 0 0 chr1 100070012 100070041 -142594312 + (TTC)n Simple_repeat Simple_repeat 2 30 0 183 42 0 0 chr1 100072784 100072808 -142591545 + (TTG)n Simple_repeat Simple_repeat 2 25 0 249 33 0 0 chr1 100074599 100074629 -142589724 + (CA)n Simple_repeat Simple_repeat 2 31 0 2336 82 3 3 chr1 100075492 100075786 -142588567 + AluSc SINE Alu 1 294 -15 217 273 12 155 chr1 100075885 100076207 -142588146 - L2 LINE L2 -61 3211 2936 223 200 20 0 chr1 100076538 100076588 -142587765 - MIR SINE MIR -50 212 162 1010 160 0 29 chr1 100076589 100076764 -142587589 + FRAM SINE Alu 1 164 -12 2397 94 0 0 chr1 100077011 100077318 -142587035 + AluSx SINE Alu 2 308 -4 260 219 16 0 chr1 100077428 100077492 -142586861 - L3 LINE CR1 -201 1376 1312 238 232 18 0 chr1 100077502 100077556 -142586797 - L3 LINE CR1 -369 1208 1154 196 293 146 0 chr1 100077556 100077679 -142586674 + MIR SINE MIR 1 141 -121 22 35 0 0 chr1 100077738 100077767 -142586586 + AT_rich Low_complexity Low_complexity 1 29 0 304 291 47 0 chr1 100077767 100077853 -142586500 - L3 LINE CR1 -427 1150 1061 203 0 37 0 chr1 100078600 100078627 -142585726 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 236 348 22 0 chr1 100078653 100078742 -142585611 + MIR SINE MIR 29 119 -89 377 197 0 13 chr1 100079620 100079696 -142584657 + LTR33A LTR ERVL 444 518 -5 216 405 15 0 chr1 100079728 100079859 -142584494 - L3 LINE CR1 -66 1511 1379 368 211 156 8 chr1 100079910 100080038 -142584315 + MIR SINE MIR 46 192 -70 263 233 14 14 chr1 100080057 100080130 -142584223 - L3 LINE CR1 -200 1377 1305 416 368 26 0 chr1 100080138 100080290 -142584063 - MER91A DNA MER1_type -1 195 40 3181 172 56 32 chr1 100080795 100081637 -142582716 - Zaphod DNA AcHobo -2 4029 3168 1104 170 5 58 chr1 100081637 100081860 -142582493 + AluJo SINE Alu 87 297 -15 2281 218 50 42 chr1 100081880 100082232 -142582121 - Zaphod DNA AcHobo -857 3174 2826 2271 109 0 0 chr1 100082232 100082526 -142581827 + AluSx SINE Alu 1 294 -18 2281 218 50 42 chr1 100082526 100082933 -142581420 - Zaphod DNA AcHobo -1205 2826 2409 2340 222 67 2 chr1 100082936 100083504 -142580849 - Zaphod DNA AcHobo -3252 779 175 277 287 129 0 chr1 100083791 100083892 -142580461 - MIR SINE MIR -61 147 34 222 322 119 0 chr1 100084548 100084666 -142579687 + L2 LINE L2 3182 3313 0 1998 134 7 0 chr1 100084678 100084968 -142579385 - AluJo SINE Alu -15 297 6 615 163 22 7 chr1 100084983 100085118 -142579235 - Charlie1 DNA MER1_type -6 2755 2619 * 1850 230 32 2 chr1 100085102 100085563 -142578790 - Charlie1 DNA MER1_type -2281 480 6 1427 212 92 49 chr1 100085692 100086241 -142578112 - MLT1F1 LTR MaLR 0 593 1 619 262 71 86 chr1 100086525 100086925 -142577428 + MLT1J LTR MaLR 16 461 -21 381 172 16 78 chr1 100087015 100087143 -142577210 + L1MC1 LINE L1 6213 6332 -1 323 263 89 80 chr1 100087206 100087419 -142576934 - L2 LINE L2 -6 3307 3093 290 266 11 43 chr1 100088157 100088251 -142576102 + MIR SINE MIR 3 93 -169 706 251 38 11 chr1 100088288 100088471 -142575882 + MIR SINE MIR 75 262 0 544 298 232 6 chr1 100091115 100091434 -142572919 + L2 LINE L2 2862 3252 -61 488 287 59 51 chr1 100091988 100092242 -142572111 - MIR SINE MIR -6 256 1 249 326 63 11 chr1 100093364 100093459 -142570894 - L2 LINE L2 -20 3252 3153 238 167 345 12 chr1 100093510 100093594 -142570759 - MER5A DNA MER1_type 0 189 78 2448 164 24 14 chr1 100093606 100094101 -142570252 - L1MA4 LINE L1 -1 6299 5800 355 167 0 69 chr1 100094180 100094252 -142570101 - MER5A DNA MER1_type -114 75 9 24 0 0 0 chr1 100094508 100094532 -142569821 + AT_rich Low_complexity Low_complexity 1 24 0 2318 84 0 0 chr1 100094539 100094826 -142569527 - AluSx SINE Alu -25 287 1 2085 125 0 0 chr1 100095207 100095527 -142568826 + AluSx SINE Alu 5 324 0 517 235 101 7 chr1 100095584 100095733 -142568620 + MIR SINE MIR 66 228 -34 2735 148 11 38 chr1 100096005 100096384 -142567969 - L1MB3 LINE L1 -10 6173 5785 2310 112 0 0 chr1 100096384 100096688 -142567665 + AluSx SINE Alu 1 304 -8 2735 148 11 38 chr1 100096688 100096749 -142567604 - L1MB3 LINE L1 -398 5785 5747 2716 85 3 6 chr1 100096749 100097114 -142567239 + THE1B LTR MaLR 1 364 0 2735 148 11 38 chr1 100097114 100097194 -142567159 - L1MB3 LINE L1 -436 5747 5666 286 301 133 0 chr1 100097398 100097511 -142566842 - MIR SINE MIR -117 145 18 331 272 72 7 chr1 100097709 100097896 -142566457 - LTR16A LTR ERVL 0 450 216 1255 149 14 34 chr1 100097905 100098113 -142566240 - AluJo SINE Alu -23 289 86 256 229 189 7 chr1 100098803 100098956 -142565397 - L1ME4a LINE L1 0 6121 5941 390 280 128 18 chr1 100099296 100099578 -142564775 - L1ME4a LINE L1 -299 5822 5510 239 311 50 8 chr1 100100000 100100119 -142564234 - L1ME4a LINE L1 -1161 4985 4862 315 274 85 104 chr1 100100302 100100589 -142563764 - L1ME4a LINE L1 -3226 2920 2629 2284 88 0 52 chr1 100100589 100100919 -142563434 + AluSp SINE Alu 1 313 0 315 274 85 104 chr1 100100919 100101000 -142563353 - L1ME4a LINE L1 -3517 2629 2548 2431 127 11 5 chr1 100101000 100101371 -142562982 + THE1C LTR MaLR 1 373 -2 315 274 85 104 chr1 100101371 100101509 -142562844 - L1ME4a LINE L1 -3598 2548 2423 406 243 74 26 chr1 100101602 100101791 -142562562 - HAL1 LINE L1 0 2507 2310 430 268 111 39 chr1 100101897 100102050 -142562303 - MIR SINE MIR -4 258 95 341 206 109 23 chr1 100102051 100102226 -142562127 - HAL1 LINE L1 -368 2139 1950 1102 287 134 19 chr1 100102330 100102996 -142561357 - HAL1 LINE L1 -731 1776 1035 296 190 0 0 chr1 100103005 100103063 -142561290 - Tigger3(Golem) DNA MER2_type -1 3028 2971 28 0 0 0 chr1 100103072 100103100 -142561253 + AT_rich Low_complexity Low_complexity 1 28 0 1749 160 3 34 chr1 100103148 100103441 -142560912 + AluJo SINE Alu 1 284 -28 263 125 0 0 chr1 100103441 100103489 -142560864 + Alu SINE Alu 255 302 0 1641 181 13 30 chr1 100103679 100103982 -142560371 - AluJb SINE Alu -6 306 9 43 35 0 0 chr1 100104009 100104066 -142560287 + AT_rich Low_complexity Low_complexity 1 57 0 326 286 133 15 chr1 100104259 100104455 -142559898 - HAL1 LINE L1 -2288 219 1 1785 120 8 8 chr1 100104593 100104852 -142559501 + AluSc SINE Alu 37 295 -14 415 288 108 4 chr1 100105312 100105552 -142558801 - HAL1 LINE L1 -815 1692 1428 387 157 0 0 chr1 100105688 100105758 -142558595 + CT-rich Low_complexity Low_complexity 1 70 0 298 203 0 27 chr1 100105758 100105832 -142558521 - AluJ/FRAM SINE Alu -7 295 224 1757 160 0 29 chr1 100105849 100106130 -142558223 - AluJo SINE Alu -39 273 1 22 35 0 0 chr1 100106286 100106315 -142558038 + AT_rich Low_complexity Low_complexity 1 29 0 1665 167 156 16 chr1 100106463 100106900 -142557453 - MLT1D LTR MaLR -2 503 6 452 228 18 0 chr1 100107117 100107231 -142557122 + Charlie1 DNA MER1_type 101 216 -2545 536 0 16 0 chr1 100107276 100107340 -142557013 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2131 118 13 65 chr1 100107353 100107537 -142556816 + THE1B LTR MaLR 1 156 -208 6794 54 19 1 chr1 100107537 100108464 -142555889 + L1PA6 LINE L1 5199 6141 -13 2131 118 13 65 chr1 100108464 100108662 -142555691 + THE1B LTR MaLR 156 363 -1 374 121 55 110 chr1 100108663 100108754 -142555599 + Charlie1 DNA MER1_type 2676 2761 0 275 282 0 0 chr1 100109313 100109391 -142554962 - HAL1 LINE L1 -839 1668 1591 390 330 80 47 chr1 100109476 100109752 -142554601 - L1MEd LINE L1 -5776 343 59 1917 134 12 47 chr1 100111185 100111506 -142552847 + AluJo SINE Alu 1 310 -2 487 378 23 5 chr1 100111651 100111868 -142552485 - MIR SINE MIR -19 243 23 650 306 69 13 chr1 100111883 100112259 -142552094 + L1MC4a LINE L1 5496 5892 -1916 644 316 110 4 chr1 100113409 100113646 -142550707 - MIR SINE MIR 0 262 1 1104 311 56 20 chr1 100114351 100115204 -142549149 + HERVL LTR ERVL 3910 4858 -906 457 255 28 95 chr1 100115209 100115566 -142548787 + HERVL LTR ERVL 5046 5378 -386 1036 287 63 6 chr1 100115608 100116098 -142548255 - L2 LINE L2 -184 3129 2613 425 221 24 154 chr1 100116444 100116717 -142547636 - MIR SINE MIR -28 234 9 1938 128 14 4 chr1 100118052 100118375 -142545978 - AluSx SINE Alu 0 326 1 459 326 67 6 chr1 100118424 100118602 -142545751 - MIR SINE MIR -54 208 20 910 254 28 5 chr1 100119699 100119912 -142544441 - MIR SINE MIR -38 224 7 433 288 85 61 chr1 100120000 100120212 -142544141 + MIR SINE MIR 2 218 -44 816 236 162 32 chr1 100120607 100120921 -142543432 + L2 LINE L2 2959 3313 0 389 323 81 8 chr1 100120919 100121043 -142543310 - MIR3 SINE MIR -66 142 10 * 1135 216 95 86 chr1 100121776 100122313 -142542040 - MLT1H LTR MaLR -3 546 5 897 324 143 23 chr1 100122316 100123269 -142541084 + L2 LINE L2 1720 2786 -528 220 337 106 48 chr1 100123832 100123949 -142540404 + L2 LINE L2 2867 2976 -337 2009 92 0 0 chr1 100123949 100124235 -142540118 - AluSc SINE Alu 0 318 33 220 337 106 48 chr1 100124235 100124493 -142539860 + L2 LINE L2 2976 3308 -5 258 150 0 0 chr1 100124511 100124551 -142539802 - MSTA LTR MaLR 0 428 389 2088 109 0 38 chr1 100124552 100124885 -142539468 + AluSg SINE Alu 1 322 0 517 235 101 7 chr1 100124942 100125091 -142539262 + MIR SINE MIR 66 228 -34 2735 148 11 38 chr1 100125363 100125742 -142538611 - L1MB3 LINE L1 -10 6173 5785 2318 112 0 0 chr1 100125742 100126047 -142538306 + AluSx SINE Alu 1 305 -7 2735 148 11 38 chr1 100126047 100126108 -142538245 - L1MB3 LINE L1 -398 5785 5747 2716 85 3 6 chr1 100126108 100126473 -142537880 + THE1B LTR MaLR 1 364 0 2735 148 11 38 chr1 100126473 100126553 -142537800 - L1MB3 LINE L1 -436 5747 5666 286 301 133 0 chr1 100126757 100126870 -142537483 - MIR SINE MIR -117 145 18 331 272 72 7 chr1 100127068 100127255 -142537098 - LTR16A LTR ERVL 0 450 216 1255 149 14 34 chr1 100127264 100127472 -142536881 - AluJo SINE Alu -23 289 86 2313 117 0 0 chr1 100131345 100131653 -142532700 - AluSx SINE Alu -4 308 1 237 218 103 23 chr1 100131653 100131740 -142532613 + MER94 DNA DNA 26 119 -15 2775 119 10 5 chr1 100131996 100132409 -142531944 - MER41B LTR ERV1 0 635 221 1117 135 0 0 chr1 100132410 100132607 -142531746 - AluSg/x SINE Alu 0 310 132 1481 144 4 0 chr1 100132607 100132836 -142531517 - MER41B LTR ERV1 -405 230 1 270 215 0 0 chr1 100132869 100132948 -142531405 + (CTA)n Simple_repeat Simple_repeat 3 81 0 273 220 0 0 chr1 100132948 100132998 -142531355 - MIR SINE MIR -2 260 211 335 244 13 0 chr1 100133083 100133161 -142531192 - MIR SINE MIR -83 179 101 574 286 76 30 chr1 100133476 100133738 -142530615 - L3 LINE CR1 -31 1546 1273 13342 113 10 47 chr1 100134012 100136839 -142527514 - L1PA10 LINE L1 -15 6153 3393 303 28 0 0 chr1 100138068 100138104 -142526249 + (TG)n Simple_repeat Simple_repeat 2 37 0 221 317 0 0 chr1 100138164 100138224 -142526129 - L2 LINE L2 -4 3309 3250 1462 136 28 0 chr1 100138740 100138953 -142525400 - MER20 DNA MER1_type 0 219 1 213 414 47 9 chr1 100139387 100139619 -142524734 - L2 LINE L2 -644 2670 2430 906 230 40 5 chr1 100140095 100140317 -142524036 + Charlie1 DNA MER1_type 9 238 -2523 572 0 15 0 chr1 100140345 100140413 -142523940 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2286 120 13 65 chr1 100140426 100140610 -142523743 + THE1B LTR MaLR 1 156 -208 7117 52 36 1 chr1 100140610 100141523 -142522830 + L1PA6 LINE L1 5199 6141 -13 2286 120 13 65 chr1 100141523 100141721 -142522632 + THE1B LTR MaLR 156 363 -1 415 121 55 110 chr1 100141722 100141813 -142522540 + Charlie1 DNA MER1_type 2676 2761 0 301 245 78 39 chr1 100142348 100142450 -142521903 - HAL1 LINE L1 -811 1696 1591 371 330 80 47 chr1 100142535 100142811 -142521542 - L1MEd LINE L1 -5776 343 59 1909 133 12 47 chr1 100144243 100144565 -142519788 + AluJo SINE Alu 1 311 -1 484 350 37 18 chr1 100144710 100144927 -142519426 - MIR SINE MIR -19 243 23 803 295 72 16 chr1 100144942 100145318 -142519035 + L1MC4a LINE L1 5496 5892 -1916 629 300 118 13 chr1 100146467 100146704 -142517649 - MIR SINE MIR 0 262 1 1263 307 58 22 chr1 100147409 100148262 -142516091 + ERVL LTR ERVL 3950 4858 -906 575 257 25 95 chr1 100148267 100148625 -142515728 + ERVL LTR ERVL 5046 5378 -386 1037 288 63 5 chr1 100148667 100149156 -142515197 - L2 LINE L2 -184 3129 2613 421 221 24 154 chr1 100149502 100149775 -142514578 - MIR SINE MIR -28 234 9 1931 128 14 4 chr1 100151110 100151433 -142512920 - AluSx SINE Alu 0 326 1 442 326 67 6 chr1 100151482 100151660 -142512693 - MIR SINE MIR -54 208 20 910 254 28 5 chr1 100152757 100152970 -142511383 - MIR SINE MIR -38 224 7 420 288 85 61 chr1 100153058 100153270 -142511083 + MIR SINE MIR 2 218 -44 806 242 162 32 chr1 100153665 100153979 -142510374 + L2 LINE L2 2959 3313 0 375 323 81 8 chr1 100153977 100154101 -142510252 - MIR3 SINE MIR -66 142 10 * 1320 206 101 90 chr1 100154834 100155367 -142508986 - MLT1H LTR MaLR -3 546 8 872 321 144 23 chr1 100155374 100156326 -142508027 + L2 LINE L2 1720 2786 -528 2010 92 0 0 chr1 100157006 100157292 -142507061 - AluSc SINE Alu 0 318 33 183 258 65 32 chr1 100157489 100157551 -142506802 + L2 LINE L2 3245 3308 -5 2354 112 140 29 chr1 100157569 100157610 -142506743 - MSTA LTR MaLR 0 428 393 2123 127 0 35 chr1 100157610 100157925 -142506428 + AluSg SINE Alu 1 304 -6 2354 112 140 29 chr1 100157925 100158268 -142506085 - MSTA LTR MaLR -35 393 1 667 208 8 8 chr1 100158269 100158389 -142505964 + MER5A DNA MER1_type 1 120 -69 1928 205 28 49 chr1 100158390 100158859 -142505494 + MLT1D LTR MaLR 2 460 -45 1282 131 10 30 chr1 100158920 100159034 -142505319 - L1PB4 LINE L1 -2 6154 6044 2074 139 54 35 chr1 100159034 100159402 -142504951 - THE1C LTR MaLR 0 375 1 1282 131 10 30 chr1 100159402 100159485 -142504868 - L1PB4 LINE L1 -112 6044 5961 1987 90 10 41 chr1 100159726 100160052 -142504301 - AluSx SINE Alu 0 317 1 236 188 45 125 chr1 100160074 100160186 -142504167 + L2 LINE L2 3168 3270 -2 488 185 22 11 chr1 100160977 100161069 -142503284 + MLT1D LTR MaLR 474 566 -24 358 116 43 0 chr1 100161085 100161154 -142503199 + L1PB4 LINE L1 6084 6155 -1 438 276 30 0 chr1 100161595 100161729 -142502624 + MIR SINE MIR 70 207 -55 317 324 142 0 chr1 100161945 100162093 -142502260 + MER117 DNA MER1_type 3 171 -26 290 284 2 0 chr1 100162268 100162348 -142502005 - MIR SINE MIR -84 124 44 380 295 106 30 chr1 100162566 100162803 -142501550 + MIR SINE MIR 4 258 -4 255 203 136 42 chr1 100164952 100165070 -142499283 - L1ME4a LINE L1 -4 6117 5989 414 234 83 36 chr1 100165120 100165312 -142499041 - L1ME4a LINE L1 -236 5885 5685 464 302 89 12 chr1 100165313 100165482 -142498871 - MER5A DNA MER1_type -1 188 7 236 240 0 0 chr1 100165484 100165534 -142498819 - L1ME4a LINE L1 -439 5682 5633 730 260 37 62 chr1 100166258 100166376 -142497977 - L1ME3A LINE L1 -11 6159 6039 2351 110 0 0 chr1 100166376 100166686 -142497667 + AluSg SINE Alu 1 310 0 730 260 37 62 chr1 100166686 100166840 -142497513 - L1ME3A LINE L1 -131 6039 5894 714 156 139 0 chr1 100167013 100167135 -142497218 + AluJb SINE Alu 166 304 -8 338 336 109 38 chr1 100167252 100167490 -142496863 + MIR SINE MIR 2 256 -6 201 39 0 0 chr1 100169697 100169723 -142494630 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6476 137 7 29 chr1 100169756 100170816 -142493537 - L1MC1 LINE L1 -1 6612 5577 2417 72 3 10 chr1 100170821 100171126 -142493227 - AluSc SINE Alu -6 303 1 379 292 33 0 chr1 100171130 100171250 -142493103 - L1MC1 LINE L1 -984 5442 5319 3611 162 22 29 chr1 100171252 100171628 -142492725 + MER73 LTR ERVL 18 390 -254 1643 173 14 14 chr1 100171628 100171923 -142492430 + AluJb SINE Alu 1 295 -17 3611 162 22 29 chr1 100171923 100172177 -142492176 + MER73 LTR ERVL 390 644 0 8117 210 36 51 chr1 100172177 100172890 -142491463 - L1MC1 LINE L1 -1103 5323 4601 274 111 0 0 chr1 100172890 100172926 -142491427 - MADE1 DNA Mariner 0 80 45 8117 210 36 51 chr1 100172926 100174191 -142490162 - L1MC1 LINE L1 -1825 4601 3345 830 133 27 40 chr1 100174191 100174341 -142490012 - L1PA15 LINE L1 -1 6164 6017 8117 210 36 51 chr1 100174341 100174571 -142489782 - L1MC1 LINE L1 -3081 3345 3113 5453 169 45 75 chr1 100174543 100175712 -142488641 - L1MC1 LINE L1 -5288 1138 6 * 982 257 127 29 chr1 100175814 100176199 -142488154 - MLT1H LTR MaLR -98 451 29 355 266 240 13 chr1 100176215 100176369 -142487984 + MIR SINE MIR 45 233 -29 2320 101 3 0 chr1 100177009 100177315 -142487038 - AluSc SINE Alu -2 307 1 2251 131 0 0 chr1 100179062 100179367 -142484986 - AluSx SINE Alu -7 305 1 239 277 36 24 chr1 100179375 100179458 -142484895 - MIR SINE MIR -75 187 104 341 333 7 29 chr1 100179747 100179885 -142484468 - L2 LINE L2 0 3313 3179 2185 137 0 0 chr1 100179939 100180245 -142484108 - AluSq SINE Alu -7 306 1 1391 208 66 64 chr1 100180479 100180932 -142483421 + L1MC5 LINE L1 7076 7529 -432 2027 125 4 0 chr1 100180936 100181217 -142483136 + AluSx SINE Alu 1 282 -30 1164 155 21 50 chr1 100181551 100181790 -142482563 - AluJb SINE Alu 0 312 81 1699 186 7 7 chr1 100181839 100182130 -142482223 + AluJo SINE Alu 1 291 -21 23 0 0 0 chr1 100183485 100183508 -142480845 + AT_rich Low_complexity Low_complexity 1 23 0 536 267 68 0 chr1 100184263 100184409 -142479944 + MIR SINE MIR 1 156 -106 285 299 195 14 chr1 100184678 100184899 -142479454 + L2 LINE L2 2245 2505 -809 821 345 82 21 chr1 100185010 100185436 -142478917 + MLT1K LTR MaLR 121 572 -16 788 298 29 76 chr1 100185457 100185941 -142478412 + L2 LINE L2 2517 2977 -337 228 269 0 51 chr1 100186125 100186203 -142478150 + L2 LINE L2 3184 3257 -15 442 278 15 0 chr1 100186222 100186355 -142477998 + MIR SINE MIR 55 189 -73 2555 175 11 81 chr1 100186399 100186441 -142477912 - MLT2B1 LTR ERVL 0 520 477 355 38 38 0 chr1 100186441 100186494 -142477859 + (CA)n Simple_repeat Simple_repeat 2 56 0 2555 175 11 81 chr1 100186494 100186513 -142477840 - MLT2B1 LTR ERVL -43 477 458 301 75 38 0 chr1 100186513 100186566 -142477787 + (TA)n Simple_repeat Simple_repeat 2 56 0 2555 175 11 81 chr1 100186566 100186977 -142477376 - MLT2B1 LTR ERVL -62 458 89 2305 124 33 28 chr1 100186977 100187339 -142477014 + THE1B LTR MaLR 1 364 0 2555 175 11 81 chr1 100187339 100187423 -142476930 - MLT2B1 LTR ERVL -431 89 1 1414 193 70 21 chr1 100187637 100187964 -142476389 - MER2 DNA MER2_type -1 343 1 2336 88 14 0 chr1 100188438 100188735 -142475618 + AluSq SINE Alu 1 301 -12 306 280 72 52 chr1 100188773 100188966 -142475387 + L2 LINE L2 3117 3313 0 2022 117 3 39 chr1 100191154 100191463 -142472890 + AluSx SINE Alu 13 310 -2 228 303 103 41 chr1 100191893 100192088 -142472265 - L2 LINE L2 -489 2825 2619 396 0 0 0 chr1 100192586 100192630 -142471723 + (CA)n Simple_repeat Simple_repeat 2 45 0 240 336 0 10 chr1 100192995 100193099 -142471254 + T-rich Low_complexity Low_complexity 1 103 0 206 292 34 11 chr1 100193402 100193491 -142470862 + MIR SINE MIR 63 153 -109 642 243 221 39 chr1 100194009 100194470 -142469883 - MLT1H LTR MaLR 0 549 5 354 140 0 0 chr1 100194592 100194649 -142469704 - MLT2B2 LTR ERVL 0 520 464 206 262 0 0 chr1 100194651 100194693 -142469660 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 246 238 5 0 chr1 100194694 100194771 -142469582 - L1MC4 LINE L1 -1339 6983 2006 322 250 17 17 chr1 100194781 100194901 -142469452 + (CATATA)n Simple_repeat Simple_repeat 3 122 0 1679 170 174 20 chr1 100194902 100195295 -142469058 - MLT2B2 LTR ERVL -56 440 1 214 343 14 0 chr1 100196171 100196244 -142468109 - L2 LINE L2 -635 2679 2606 322 331 44 28 chr1 100196652 100196833 -142467520 - MIR SINE MIR -59 203 20 2438 81 3 0 chr1 100206696 100206992 -142457361 + AluSq SINE Alu 1 297 -16 429 144 0 0 chr1 100206992 100207082 -142457271 + (TA)n Simple_repeat Simple_repeat 1 90 0 2031 116 10 10 chr1 100207739 100208031 -142456322 + AluSx SINE Alu 11 302 -10 212 162 27 0 chr1 100209991 100210028 -142454325 + GA-rich Low_complexity Low_complexity 2 39 0 2256 94 19 3 chr1 100212565 100212872 -142451481 - AluSp SINE Alu -1 312 1 356 223 101 40 chr1 100213042 100213190 -142451163 - MIR SINE MIR -26 236 80 472 298 53 6 chr1 100213619 100213790 -142450563 - MIR SINE MIR -83 179 1 1832 156 0 17 chr1 100215217 100215550 -142448803 + AluJb SINE Alu 1 328 0 2170 133 0 0 chr1 100215716 100216017 -142448336 - AluSx SINE Alu -10 302 2 681 267 136 36 chr1 100217437 100217767 -142446586 + MARNA DNA Mariner 178 540 -46 211 288 0 12 chr1 100220250 100220330 -142444023 + C-rich Low_complexity Low_complexity 3 81 0 2342 90 0 19 chr1 100221155 100221466 -142442887 + AluSx SINE Alu 1 305 -7 235 227 0 0 chr1 100222104 100222148 -142442205 - MIR SINE MIR -2 260 217 418 200 25 0 chr1 100222160 100222240 -142442113 - Tigger5 DNA MER2_type 0 2323 2242 * 460 207 0 0 chr1 100222230 100222312 -142442041 + Tigger5 DNA MER2_type 2242 2323 0 335 155 0 113 chr1 100222312 100222377 -142441976 - Tigger5 DNA MER2_type -2266 57 1 433 315 111 6 chr1 100222377 100222558 -142441795 - MIR SINE MIR -58 204 5 22 56 0 0 chr1 100223415 100223451 -142440902 + AT_rich Low_complexity Low_complexity 1 36 0 2181 113 0 3 chr1 100224218 100224519 -142439834 - AluSq SINE Alu -13 300 1 22 0 0 0 chr1 100226170 100226192 -142438161 + AT_rich Low_complexity Low_complexity 1 22 0 2395 97 0 0 chr1 100227081 100227380 -142436973 + AluSq SINE Alu 1 299 -14 24 32 0 0 chr1 100227418 100227449 -142436904 + AT_rich Low_complexity Low_complexity 1 31 0 34 0 0 0 chr1 100227727 100227761 -142436592 + AT_rich Low_complexity Low_complexity 1 34 0 1082 279 67 51 chr1 100228187 100228681 -142435672 - MLT1L LTR MaLR -75 540 39 629 250 140 15 chr1 100228706 100228997 -142435356 + MLT1H1 LTR MaLR 186 548 -7 2731 208 111 52 chr1 100228999 100229407 -142434946 + L1M4 LINE L1 2210 2593 -3553 2845 65 6 0 chr1 100229407 100229760 -142434593 - THE1A LTR MaLR 0 355 1 12094 87 7 1 chr1 100229760 100231331 -142433022 - THE1A-int LTR MaLR 0 1580 1 2638 103 11 0 chr1 100231331 100231682 -142432671 - THE1A LTR MaLR 0 355 1 2731 208 111 52 chr1 100231682 100231989 -142432364 + L1M4 LINE L1 2593 2881 -3265 2032 115 11 0 chr1 100231989 100232275 -142432078 - AluSq SINE Alu -24 289 1 2731 208 111 52 chr1 100232275 100232339 -142432014 + L1M4 LINE L1 2881 2940 -3206 1988 133 3 22 chr1 100232339 100232655 -142431698 + AluSx SINE Alu 3 312 0 2731 208 111 52 chr1 100232655 100232966 -142431387 + L1M4 LINE L1 2940 3368 -2778 596 220 23 8 chr1 100233066 100233247 -142431106 - FLAM_C SINE Alu 0 143 10 1778 169 0 7 chr1 100233289 100233573 -142430780 + AluJo SINE Alu 5 286 -26 2783 248 94 29 chr1 100233606 100233778 -142430575 + L1M4 LINE L1 3425 3584 -2562 2100 132 3 0 chr1 100233778 100234073 -142430280 + AluSx SINE Alu 1 296 -16 2783 248 94 29 chr1 100234073 100234380 -142429973 + L1M4 LINE L1 3584 3869 -2277 2081 133 3 0 chr1 100234380 100234674 -142429679 - AluSx SINE Alu -17 295 1 2783 248 94 29 chr1 100234674 100234830 -142429523 + L1M4 LINE L1 3869 4013 -2133 2380 94 0 3 chr1 100234830 100235139 -142429214 - AluSg SINE Alu -2 308 1 2783 248 94 29 chr1 100235139 100235781 -142428572 + L1M4 LINE L1 4013 4788 -1358 489 194 0 0 chr1 100235804 100235896 -142428457 + (TA)n Simple_repeat Simple_repeat 1 95 -8 2312 91 3 0 chr1 100235896 100236193 -142428160 - AluSq SINE Alu -14 299 2 489 194 0 0 chr1 100236193 100236203 -142428150 + (TA)n Simple_repeat Simple_repeat 94 103 0 233 204 37 0 chr1 100236261 100236315 -142428038 + L1MC4 LINE L1 6819 6874 -1168 3056 77 11 16 chr1 100236499 100236941 -142427412 + L1PA8 LINE L1 5733 6172 0 4642 141 31 39 chr1 100237052 100237072 -142427281 - L1MB3 LINE L1 0 6183 6164 703 217 0 0 chr1 100237072 100237192 -142427161 + FLAM_A SINE Alu 2 121 -12 4642 141 31 39 chr1 100237192 100238043 -142426310 - L1MB3 LINE L1 -19 6164 5317 2331 96 0 3 chr1 100238043 100238346 -142426007 - AluSx SINE Alu -10 302 1 4642 141 31 39 chr1 100238346 100238409 -142425944 - L1MB3 LINE L1 -866 5317 5255 708 241 22 45 chr1 100238558 100238782 -142425571 + MIR SINE MIR 42 260 -2 204 237 0 0 chr1 100239056 100239094 -142425259 + MIR SINE MIR 40 77 -131 642 271 12 24 chr1 100240535 100240705 -142423648 - L2 LINE L2 -225 3088 2921 783 224 51 66 chr1 100240801 100240972 -142423381 + MER93b LTR ERV1 74 246 -127 2152 133 0 0 chr1 100240972 100241266 -142423087 - AluSg SINE Alu -16 294 1 1783 151 45 0 chr1 100241265 100241556 -142422797 - AluJb SINE Alu -3 309 6 * 783 224 51 66 chr1 100241266 100241708 -142422645 + MER93b LTR ERV1 246 373 0 187 328 22 90 chr1 100241708 100241842 -142422511 - L2 LINE L2 -357 2915 2799 2261 111 7 0 chr1 100241898 100242196 -142422157 + AluSg SINE Alu 1 300 -10 489 213 0 0 chr1 100242198 100242292 -142422061 - L2 LINE L2 -691 2623 2530 2493 199 53 34 chr1 100242304 100243004 -142421349 - L1ME1 LINE L1 -5 6161 5449 257 239 11 54 chr1 100243022 100243115 -142421238 + MLT1G1 LTR MaLR 15 143 -406 2347 202 97 32 chr1 100243146 100243254 -142421099 - L1MB2 LINE L1 -17 6652 6552 2229 100 28 0 chr1 100243254 100243545 -142420808 - AluSg SINE Alu -9 301 3 2347 202 97 32 chr1 100243545 100244494 -142419859 - L1MB2 LINE L1 -117 6552 5529 1361 53 6 0 chr1 100244495 100244664 -142419689 + AluY SINE Alu 128 297 -14 6430 215 70 30 chr1 100244668 100245192 -142419161 - L1MB2 LINE L1 -1112 5532 5030 2368 77 7 3 chr1 100245192 100245492 -142418861 - AluY SINE Alu -10 301 1 6430 215 70 30 chr1 100245492 100246893 -142417460 - L1MB2 LINE L1 -1614 5030 3276 2238 114 0 9 chr1 100246893 100247209 -142417144 - AluSq SINE Alu 0 313 1 6430 215 70 30 chr1 100247209 100247824 -142416529 - L1MB2 LINE L1 -3368 3276 2687 * 6508 205 58 12 chr1 100247800 100249731 -142414622 - L1MB2 LINE L1 -4623 2023 17 908 277 108 47 chr1 100249736 100250165 -142414188 + MLT1G1 LTR MaLR 93 587 -8 3038 62 65 7 chr1 100250189 100250606 -142413747 - MLT2A1 LTR ERVL -1 443 3 464 277 33 73 chr1 100250795 100251095 -142413258 + MLT1G1-int LTR MaLR 314 601 -770 454 238 32 24 chr1 100251365 100251491 -142412862 + MLT1G1-int LTR MaLR 756 882 -489 1260 251 122 34 chr1 100252043 100252532 -142411821 + MLT1G1 LTR MaLR 14 595 0 422 160 68 24 chr1 100252537 100252786 -142411567 - L1ME1 LINE L1 -727 5435 5127 395 274 54 81 chr1 100252795 100253018 -142411335 - MIR SINE MIR -41 221 5 303 319 42 34 chr1 100253049 100253168 -142411185 + MIR SINE MIR 65 184 -78 322 128 90 64 chr1 100254124 100254202 -142410151 - MER116 DNA Mariner 0 80 1 21 0 0 0 chr1 100254321 100254342 -142410011 + AT_rich Low_complexity Low_complexity 1 21 0 2047 125 0 26 chr1 100254933 100255236 -142409117 + AluSq SINE Alu 1 295 -18 637 151 0 9 chr1 100255918 100256024 -142408329 + MSTA LTR MaLR 1 105 -321 1061 152 22 0 chr1 100256039 100256223 -142408130 + MSTA LTR MaLR 233 420 -8 240 250 210 10 chr1 100256578 100256678 -142407675 + MIR SINE MIR 86 205 -57 2074 72 4 4 chr1 100257451 100257714 -142406639 - AluSp SINE Alu -50 263 1 633 222 71 80 chr1 100257847 100258059 -142406294 - MER63A DNA MER1_type 0 210 1 1964 130 27 3 chr1 100258072 100258364 -142405989 - AluSx SINE Alu -13 299 1 531 246 177 0 chr1 100259067 100259242 -142405111 - L3b LINE CR1 -120 1463 1258 21 0 0 0 chr1 100259732 100259753 -142404600 + AT_rich Low_complexity Low_complexity 1 21 0 6826 61 15 10 chr1 100259763 100261201 -142403152 - SVA Other Other -875 1369 4 288 0 0 0 chr1 100261318 100261350 -142403003 + (ATG)n Simple_repeat Simple_repeat 2 33 0 225 324 93 19 chr1 100261462 100261570 -142402783 - L2 LINE L2 -938 2376 2261 897 119 30 8 chr1 100262676 100262810 -142401543 + AluJo SINE Alu 1 137 -175 192 77 0 0 chr1 100264424 100264450 -142399903 + (CAT)n Simple_repeat Simple_repeat 3 28 0 21 57 0 0 chr1 100265508 100265543 -142398810 + AT_rich Low_complexity Low_complexity 1 35 0 260 113 151 0 chr1 100265850 100265903 -142398450 + MLT1L LTR MaLR 147 207 -408 692 268 121 5 chr1 100266830 100267054 -142397299 + MIR SINE MIR 12 261 -1 263 247 71 24 chr1 100267096 100267181 -142397172 - L2 LINE L2 -1534 1780 1692 1019 274 27 44 chr1 100267181 100267594 -142396759 - L2 LINE L2 -2160 1154 749 451 279 133 7 chr1 100267613 100267847 -142396506 + L2 LINE L2 2782 3037 -276 354 275 247 6 chr1 100267848 100268030 -142396323 - L2 LINE L2 -2617 697 472 1869 161 10 13 chr1 100268246 100268551 -142395802 + AluJo SINE Alu 1 304 -8 518 274 165 32 chr1 100270096 100270538 -142393815 + HAL1 LINE L1 1234 1734 -773 1110 210 17 0 chr1 100270612 100270845 -142393508 + L1MB5 LINE L1 5938 6174 0 785 170 97 0 chr1 100270846 100271011 -142393342 - Charlie1 DNA MER1_type -976 1785 1605 1053 92 0 14 chr1 100271833 100271975 -142392378 + FRAM SINE Alu 28 167 -9 581 320 172 9 chr1 100272015 100272334 -142392019 + HAL1 LINE L1 1128 1498 -1009 424 340 73 12 chr1 100272679 100272938 -142391415 + L1 LINE L1 4733 5007 -1139 2342 106 0 3 chr1 100273452 100273764 -142390589 + AluSx SINE Alu 1 311 -1 30 45 0 0 chr1 100273813 100273857 -142390496 + AT_rich Low_complexity Low_complexity 1 44 0 304 257 82 71 chr1 100273870 100274053 -142390300 + L1M4 LINE L1 2647 2831 -3315 365 314 67 22 chr1 100274300 100274705 -142389648 + L1M4 LINE L1 3325 3747 -2399 535 141 0 0 chr1 100274707 100274792 -142389561 - MER46B DNA MER2_type -2 234 150 1548 86 90 19 chr1 100274878 100275145 -142389208 - MER46B DNA MER2_type -75 161 1 893 325 143 33 chr1 100275176 100275986 -142388367 + L1M4 LINE L1 3784 4682 -1464 2197 136 0 0 chr1 100275992 100276301 -142388052 + AluSx SINE Alu 1 309 -3 232 333 147 0 chr1 100276305 100276407 -142387946 - L2 LINE L2 0 3313 3197 581 280 169 48 chr1 100276766 100277485 -142386868 + L1ME3A LINE L1 527 1336 -4793 240 224 0 0 chr1 100277564 100277631 -142386722 + L1ME3A LINE L1 1451 1517 -4612 1345 271 45 26 chr1 100277862 100278360 -142385993 + L1ME3A LINE L1 5279 5793 -360 2355 83 3 7 chr1 100278360 100278662 -142385691 + AluSx SINE Alu 1 301 -11 1345 271 45 26 chr1 100278662 100278786 -142385567 + L1ME3A LINE L1 5793 5913 -240 25 75 0 0 chr1 100279991 100280044 -142384309 + AT_rich Low_complexity Low_complexity 1 53 0 514 235 89 73 chr1 100280168 100280380 -142383973 + L1ME4a LINE L1 5497 5719 -402 2261 117 0 0 chr1 100280380 100280671 -142383682 - AluSx SINE Alu -21 291 1 514 235 89 73 chr1 100280671 100280841 -142383512 + L1ME4a LINE L1 5719 5885 -236 307 260 19 39 chr1 100281488 100281592 -142382761 + L1ME4a LINE L1 5977 6078 -43 1683 160 20 24 chr1 100281606 100281900 -142382453 - AluJo SINE Alu -19 293 1 2280 78 3 3 chr1 100282188 100282484 -142381869 - AluY SINE Alu -15 296 1 1943 179 0 3 chr1 100283022 100283324 -142381029 + AluJb SINE Alu 1 301 -11 2181 120 0 0 chr1 100286123 100286423 -142377930 - AluSx SINE Alu -12 300 1 193 261 0 0 chr1 100288357 100288403 -142375950 + L2 LINE L2 3263 3308 -5 28 48 0 0 chr1 100290114 100290156 -142374197 + AT_rich Low_complexity Low_complexity 1 42 0 1730 105 29 7 chr1 100291211 100291487 -142372866 - L1PA15 LINE L1 -4 6161 5880 614 243 111 7 chr1 100291745 100291889 -142372464 + MER45A DNA AcHobo 4 162 -16 1946 147 27 23 chr1 100293720 100294148 -142370205 + LTR23 LTR ERV1 2 463 -4 2468 218 79 44 chr1 100294476 100295156 -142369197 + MER72 LTR ERV1 1 704 -18 256 100 20 20 chr1 100296430 100296480 -142367873 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 2109 99 0 10 chr1 100296480 100296772 -142367581 - AluSx SINE Alu -23 289 1 1190 118 0 0 chr1 100296774 100296943 -142367410 - AluSg/x SINE Alu -8 304 136 2027 119 10 16 chr1 100296945 100297248 -142367105 - AluSq SINE Alu -12 301 1 2234 85 3 0 chr1 100298630 100298913 -142365440 + AluSp SINE Alu 1 284 -29 357 228 47 39 chr1 100299183 100299310 -142365043 - MER112 DNA MER1_type -1 259 132 298 221 116 0 chr1 100299650 100299736 -142364617 + MER94 DNA DNA 2 97 -37 2121 98 0 7 chr1 100302005 100302317 -142362036 + AluSx SINE Alu 1 310 0 851 275 62 17 chr1 100302409 100302649 -142361704 + MIR SINE MIR 4 254 -8 924 155 14 0 chr1 100303548 100303690 -142360663 - FAM SINE Alu -41 144 1 408 298 83 0 chr1 100311066 100311187 -142353166 + L2 LINE L2 3137 3267 -5 330 337 20 0 chr1 100311472 100311573 -142352780 - L2 LINE L2 -3 3310 3208 2365 93 0 0 chr1 100311785 100312095 -142352258 + AluY SINE Alu 1 310 -1 22 0 0 0 chr1 100314760 100314782 -142349571 + AT_rich Low_complexity Low_complexity 1 22 0 299 275 66 33 chr1 100314997 100315088 -142349265 + L3 LINE CR1 1461 1554 -23 947 189 280 0 chr1 100316330 100316616 -142347737 - MER47A DNA MER2_type 0 366 1 687 276 29 6 chr1 100317093 100317263 -142347090 + MER8 DNA MER2_type 3 176 -63 286 226 32 16 chr1 100317241 100317303 -142347050 + MER2 DNA MER2_type 282 344 -1 * 529 123 0 0 chr1 100317303 100317375 -142346978 - Tigger2 DNA MER2_type -2646 72 1 30 45 0 0 chr1 100317814 100317858 -142346495 + AT_rich Low_complexity Low_complexity 1 44 0 266 222 74 0 chr1 100318165 100318219 -142346134 - MER2 DNA MER2_type -3 342 285 984 214 19 0 chr1 100318262 100318468 -142345885 - MER2 DNA MER2_type -135 210 1 1953 106 7 3 chr1 100318621 100318904 -142345449 + AluSx SINE Alu 1 284 -28 210 71 0 0 chr1 100318904 100318932 -142345421 + (GGGAA)n Simple_repeat Simple_repeat 1 28 0 399 21 0 0 chr1 100318935 100318983 -142345370 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 369 335 16 22 chr1 100319169 100319354 -142344999 + L1MB5 LINE L1 2420 2603 -3526 767 233 86 24 chr1 100319376 100319586 -142344767 + Charlie2a DNA MER1_type 1 223 -2559 1439 252 78 78 chr1 100319624 100320467 -142343886 + L2 LINE L2 2431 3267 -46 266 250 0 16 chr1 100320470 100320534 -142343819 + Charlie2a DNA MER1_type 240 302 -2480 217 174 0 22 chr1 100320655 100320701 -142343652 + CT-rich Low_complexity Low_complexity 2 46 0 519 240 110 7 chr1 100320757 100320911 -142343442 + Charlie2a DNA MER1_type 1476 1645 -1217 399 229 110 0 chr1 100320949 100321058 -142343295 + Charlie2a DNA MER1_type 2742 2862 0 419 266 38 62 chr1 100321205 100321629 -142342724 + L1MEd LINE L1 961 1416 -4882 267 193 114 23 chr1 100321760 100321845 -142342508 + MER90 LTR ERV1 220 312 -302 13638 137 36 32 chr1 100321845 100321974 -142342379 - Tigger1 DNA MER2_type 0 2418 2291 1313 88 57 0 chr1 100321974 100322168 -142342185 + L1PA10 LINE L1 5954 6158 -10 13638 137 36 32 chr1 100322168 100322259 -142342094 - Tigger1 DNA MER2_type -127 2291 2202 2159 101 13 3 chr1 100322259 100322567 -142341786 + AluSx SINE Alu 1 311 -1 13638 137 36 32 chr1 100322567 100323037 -142341316 - Tigger1 DNA MER2_type -216 2202 1735 2214 109 0 0 chr1 100323037 100323330 -142341023 - AluSx SINE Alu -17 295 3 13638 137 36 32 chr1 100323330 100325045 -142339308 - Tigger1 DNA MER2_type -683 1735 3 821 206 19 43 chr1 100325107 100325348 -142339005 + L1MEd LINE L1 2910 3143 -2986 512 175 58 0 chr1 100325355 100325458 -142338895 + FLAM_A SINE Alu 25 133 -9 5371 213 69 79 chr1 100325493 100326695 -142337658 + L1MB5 LINE L1 3182 4394 -1763 458 109 27 2 chr1 100326695 100326879 -142337474 + AluSq SINE Alu 83 303 0 5371 213 69 79 chr1 100326879 100328442 -142335911 + L1MB5 LINE L1 4394 6082 -75 3733 186 55 0 chr1 100328442 100329137 -142335216 + MER44D DNA MER2_type 1 605 0 5371 213 69 79 chr1 100329137 100329202 -142335151 + L1MB5 LINE L1 6082 6146 -11 1028 240 41 8 chr1 100329208 100329454 -142334899 + MER90 LTR ERV1 361 614 0 389 239 104 39 chr1 100329463 100329743 -142334610 + L1ME3A LINE L1 1799 2096 -4444 1842 158 71 13 chr1 100330015 100330408 -142333945 + Charlie1b DNA MER1_type 12 427 -96 725 151 167 73 chr1 100330407 100330599 -142333754 + MER20 DNA MER1_type 6 215 -4 * 233 236 90 11 chr1 100330700 100330789 -142333564 + L1ME3A LINE L1 4886 4981 -1559 180 0 0 0 chr1 100330867 100330887 -142333466 + (TTA)n Simple_repeat Simple_repeat 3 22 0 549 306 35 24 chr1 100330892 100331147 -142333206 + L1ME3A LINE L1 5150 5407 -1133 630 211 27 60 chr1 100331229 100331414 -142332939 - MER20 DNA MER1_type -4 215 37 625 288 26 7 chr1 100331486 100331757 -142332596 + L1ME3A LINE L1 5445 5720 -820 1609 226 150 41 chr1 100331931 100332565 -142331788 + L1ME3A LINE L1 5855 6557 -7 1440 207 15 81 chr1 100333769 100334175 -142330178 - MLT1B LTR MaLR -11 379 1 627 288 164 39 chr1 100334359 100334384 -142329969 + L2 LINE L2 2834 2854 -459 2216 92 0 3 chr1 100334384 100334676 -142329677 - AluSq SINE Alu -22 291 1 627 288 164 39 chr1 100334676 100335039 -142329314 + L2 LINE L2 2854 3271 -42 2242 115 7 3 chr1 100335092 100335396 -142328957 + AluSx SINE Alu 1 305 -7 271 311 165 47 chr1 100335596 100335989 -142328364 + L2 LINE L2 2646 3078 -194 2282 82 0 47 chr1 100336391 100336709 -142327644 + AluSg SINE Alu 1 303 -7 1517 148 19 51 chr1 100337711 100338031 -142326322 + MLT1B LTR MaLR 1 358 -32 1623 185 45 13 chr1 100338031 100338339 -142326014 + Tigger7 DNA MER2_type 1 318 -415 856 161 92 0 chr1 100338335 100338509 -142325844 + Tigger7 DNA MER2_type 2302 2491 0 * 203 316 115 22 chr1 100338981 100339120 -142325233 + MER5B DNA MER1_type 12 163 -15 230 333 101 23 chr1 100339151 100339280 -142325073 - MER5B DNA MER1_type -34 144 6 2022 94 0 0 chr1 100339389 100339644 -142324709 + AluSc SINE Alu 45 299 -10 1009 215 4 18 chr1 100339751 100340030 -142324323 + L1MB3 LINE L1 3735 4009 -2137 2039 132 7 20 chr1 100340037 100340340 -142324013 - AluSg SINE Alu -9 301 3 296 203 0 0 chr1 100340351 100340410 -142323943 + L1MB3 LINE L1 4102 4160 -1986 782 176 7 14 chr1 100340616 100340764 -142323589 + AluSg/x SINE Alu 152 298 -12 4628 154 65 8 chr1 100340768 100341760 -142322593 + L1MB3 LINE L1 5138 6183 0 23 33 0 0 chr1 100341959 100341989 -142322364 + AT_rich Low_complexity Low_complexity 1 30 0 396 220 424 6 chr1 100342004 100342181 -142322172 + MIR SINE MIR 2 252 -10 252 143 533 19 chr1 100342503 100342608 -142321745 + MER34 LTR ERV1 23 122 -420 248 242 0 32 chr1 100342579 100342641 -142321712 + MER39 LTR ERV1 223 282 -425 * 618 157 35 26 chr1 100342677 100342792 -142321561 + MER39 LTR ERV1 389 504 -203 1101 136 62 6 chr1 100342792 100342968 -142321385 + AluSg/x SINE Alu 108 293 -17 476 307 127 38 chr1 100343029 100343738 -142320615 + L2 LINE L2 2283 3058 -214 266 360 26 44 chr1 100343738 100343852 -142320501 - L2 LINE L2 0 3272 3161 2331 91 0 19 chr1 100344062 100344369 -142319984 - AluSx SINE Alu -11 301 1 277 347 58 25 chr1 100344397 100344518 -142319835 + MIR SINE MIR 21 145 -63 341 308 170 45 chr1 100344805 100345052 -142319301 + L2 LINE L2 2988 3265 -7 181 327 19 0 chr1 100345051 100345103 -142319250 + L3 LINE CR1 628 680 -897 * 601 157 10 20 chr1 100345391 100345493 -142318860 + MER2 DNA MER2_type 1 101 -244 391 296 134 19 chr1 100346176 100346490 -142317863 + L1ME3 LINE L1 5437 5786 -335 22 0 0 0 chr1 100346658 100346680 -142317673 + AT_rich Low_complexity Low_complexity 1 22 0 2159 124 0 0 chr1 100346695 100346994 -142317359 + AluSq SINE Alu 1 299 -14 190 133 0 0 chr1 100347150 100347180 -142317173 - MIR SINE MIR -131 131 102 2110 126 3 7 chr1 100347815 100348117 -142316236 + AluSq SINE Alu 1 301 -12 284 336 164 8 chr1 100348730 100348852 -142315501 - L2 LINE L2 -9 3263 3123 1391 210 50 52 chr1 100349200 100349604 -142314749 + L1ME3 LINE L1 5759 6161 -1 23 68 0 0 chr1 100351246 100351290 -142313063 + AT_rich Low_complexity Low_complexity 1 44 0 1746 200 36 72 chr1 100352028 100352270 -142312083 + MLT1D LTR MaLR 1 250 -255 2199 112 3 7 chr1 100352270 100352575 -142311778 + AluSx SINE Alu 1 304 -8 1746 200 36 72 chr1 100352575 100352856 -142311497 + MLT1D LTR MaLR 250 505 0 420 136 45 0 chr1 100352920 100352986 -142311367 - MLT1B LTR MaLR 0 390 322 976 201 94 47 chr1 100352987 100353082 -142311271 + MLT1B LTR MaLR 79 168 -222 1692 114 0 21 chr1 100353082 100353318 -142311035 - AluSx SINE Alu -81 231 1 976 201 94 47 chr1 100353318 100353520 -142310833 + MLT1B LTR MaLR 168 390 0 478 94 115 21 chr1 100353538 100353634 -142310719 + L1MB3 LINE L1 6077 6181 -2 29 0 0 25 chr1 100353782 100353800 -142310553 + AT_rich Low_complexity Low_complexity 1 18 -21 4770 121 28 19 chr1 100353800 100354613 -142309740 - L1MA7 LINE L1 -4 6287 5467 29 0 0 25 chr1 100354613 100354634 -142309719 + AT_rich Low_complexity Low_complexity 18 39 0 829 174 71 75 chr1 100354826 100355079 -142309274 + L1MC3 LINE L1 7343 7594 -191 877 167 29 15 chr1 100355079 100355283 -142309070 + L1MC2 LINE L1 6137 6343 -1 3530 214 38 35 chr1 100355401 100356504 -142307849 + L1MB2 LINE L1 2732 3837 -2309 5561 193 47 23 chr1 100356508 100357892 -142306461 + L1MB2 LINE L1 3961 5412 -759 1749 176 25 3 chr1 100357892 100358176 -142306177 + AluJb SINE Alu 1 290 -22 5561 193 47 23 chr1 100358176 100358951 -142305402 + L1MB2 LINE L1 5412 6167 -4 778 267 94 21 chr1 100358984 100359507 -142304846 + L1MEc LINE L1 50 650 -5746 550 243 60 6 chr1 100359533 100359705 -142304648 + L1MA10 LINE L1 5988 6327 -5 2389 224 96 38 chr1 100359714 100360097 -142304256 + L1ME1 LINE L1 5288 5647 -519 2110 145 117 8 chr1 100360097 100360483 -142303870 - MSTA LTR MaLR 0 428 1 2389 224 96 38 chr1 100360483 100360925 -142303428 + L1ME1 LINE L1 5647 6161 -5 1272 246 60 111 chr1 100361303 100361391 -142302962 + MLT1H LTR MaLR 11 102 -447 1933 156 10 7 chr1 100361391 100361693 -142302660 + AluJo SINE Alu 2 304 -8 1272 246 60 111 chr1 100361693 100362170 -142302183 + MLT1H LTR MaLR 102 547 -2 443 330 72 52 chr1 100362595 100362941 -142301412 + MLT1K LTR MaLR 123 475 -113 303 301 9 0 chr1 100363065 100363178 -142301175 + L1ME LINE L1 332 445 -5625 * 1201 263 135 41 chr1 100363170 100364433 -142299920 + L1ME LINE L1 99 1406 -4676 745 178 44 0 chr1 100364507 100364642 -142299711 + MLT1A1 LTR MaLR 225 365 0 315 225 7 94 chr1 100364662 100364800 -142299553 + L1ME LINE L1 5343 5468 -696 261 218 23 11 chr1 100364787 100364874 -142299479 + L1 LINE L1 5206 5293 -853 * 4057 206 99 32 chr1 100364879 100365128 -142299225 + L1M4 LINE L1 5 236 -6306 1457 205 20 14 chr1 100365128 100365425 -142298928 + AluJo SINE Alu 1 299 -3 4057 206 99 32 chr1 100365425 100366191 -142298162 + L1M4 LINE L1 236 1088 -5454 41580 56 6 2 chr1 100366196 100372322 -142292031 + L1PA5 LINE L1 1 6154 0 3817 231 157 14 chr1 100372307 100374882 -142289471 + L1M4 LINE L1 1057 4025 -2619 * 915 174 0 24 chr1 100374882 100375049 -142289304 + FRAM SINE Alu 1 161 -15 653 207 85 5 chr1 100375050 100375238 -142289115 + L1M4 LINE L1 4015 4217 -2427 2746 259 147 32 chr1 100375258 100375851 -142288502 - HAL1 LINE L1 -590 1917 1393 2013 112 77 0 chr1 100375851 100376138 -142288215 - AluSx SINE Alu -2 310 2 2746 259 147 32 chr1 100376138 100376840 -142287513 - HAL1 LINE L1 -1114 1393 474 284 350 0 17 chr1 100376936 100377056 -142287297 - HAL1 LINE L1 -2197 310 193 708 146 41 8 chr1 100377582 100377705 -142286648 + FLAM_C SINE Alu 1 127 -16 1802 121 4 46 chr1 100378862 100379142 -142285211 - AluSx SINE Alu -9 303 36 1325 156 0 38 chr1 100380896 100381133 -142283220 + AluJb SINE Alu 85 312 0 418 206 22 81 chr1 100381135 100381271 -142283082 + L1ME3 LINE L1 5937 6064 -98 385 193 91 1 chr1 100381382 100381485 -142282868 + L1ME3 LINE L1 6058 6170 0 1986 156 0 7 chr1 100381692 100381999 -142282354 - AluSx SINE Alu -5 307 3 468 51 0 0 chr1 100382077 100382136 -142282217 + (CA)n Simple_repeat Simple_repeat 1 59 0 1191 143 103 27 chr1 100382331 100382631 -142281722 + MER33 DNA MER1_type 2 324 0 1073 152 71 0 chr1 100382680 100382904 -142281449 - L1MA8 LINE L1 -1 6290 6051 188 226 170 0 chr1 100383566 100383619 -142280734 + MIR SINE MIR 123 184 -78 1870 157 20 26 chr1 100384900 100385250 -142279103 - MER7A DNA MER2_type 0 346 1 2183 112 0 7 chr1 100385464 100385758 -142278595 - AluSx SINE Alu -20 292 1 2173 121 0 0 chr1 100386306 100386612 -142277741 + AluSx SINE Alu 2 307 -5 2223 98 14 0 chr1 100388195 100388490 -142275863 - AluSc SINE Alu -10 299 1 224 290 65 11 chr1 100388684 100388777 -142275576 + MIR3 SINE MIR 103 200 -8 329 321 148 68 chr1 100390008 100390584 -142273769 + L1M2 LINE L1 778 1399 -5450 24 0 0 0 chr1 100391603 100391627 -142272726 + AT_rich Low_complexity Low_complexity 1 24 0 309 266 78 5 chr1 100391831 100391984 -142272369 - MIR SINE MIR -2 260 36 250 274 0 0 chr1 100392330 100392392 -142271961 + (TAG)n Simple_repeat Simple_repeat 3 64 0 4858 123 7 1 chr1 100393708 100394396 -142269957 - L1PA13 LINE L1 -2 6161 5470 2429 76 0 0 chr1 100394505 100394807 -142269546 + AluY SINE Alu 1 302 -9 187 270 14 54 chr1 100395126 100395200 -142269153 + L2 LINE L2 3228 3298 -15 * 287 287 35 35 chr1 100395199 100395286 -142269067 - L2 LINE L2 -1 3271 3185 431 172 178 38 chr1 100396174 100396331 -142268022 + MER104 DNA Tc2 1 179 -1 2272 101 3 0 chr1 100396578 100396876 -142267477 + AluSx SINE Alu 1 299 -13 667 311 33 0 chr1 100397256 100397407 -142266946 + MER91A DNA MER1_type 1 156 -40 341 275 12 117 chr1 100397563 100397734 -142266619 - L2 LINE L2 -88 3184 3032 326 271 24 0 chr1 100397734 100397819 -142266534 + L2 LINE L2 2946 3032 -240 408 185 29 21 chr1 100397906 100398146 -142266207 + (TA)n Simple_repeat Simple_repeat 1 242 0 2329 97 17 0 chr1 100398209 100398508 -142265845 - AluSx SINE Alu -8 304 1 318 343 80 0 chr1 100399241 100399378 -142264975 + L2 LINE L2 3161 3308 -5 1859 136 42 3 chr1 100399412 100399699 -142264654 - AluJb SINE Alu -5 307 10 240 393 40 25 chr1 100399704 100399905 -142264448 - L2 LINE L2 -252 3020 2817 2663 196 53 33 chr1 100400295 100401578 -142262775 + L1ME1 LINE L1 4753 6164 0 255 307 70 35 chr1 100402132 100402246 -142262107 - L2 LINE L2 0 3313 3196 2050 124 3 0 chr1 100402467 100402758 -142261595 - AluSg SINE Alu -18 292 1 180 0 0 0 chr1 100403107 100403127 -142261226 + (CA)n Simple_repeat Simple_repeat 2 21 0 2071 145 0 0 chr1 100403734 100404031 -142260322 - AluSx SINE Alu -15 297 1 2347 78 0 10 chr1 100404043 100404336 -142260017 - AluSc SINE Alu -19 290 1 2399 40 40 10 chr1 100404594 100404896 -142259457 + AluY SINE Alu 1 311 0 402 293 0 41 chr1 100405327 100405450 -142258903 - L2 LINE L2 -4 3309 3192 377 164 33 16 chr1 100405536 100405643 -142258710 + MLT2A2 LTR ERVL 101 209 -235 755 261 52 17 chr1 100405899 100406129 -142258224 + MIR SINE MIR 12 249 -13 224 253 0 95 chr1 100406162 100406257 -142258096 - L2 LINE L2 -9 3263 3178 1243 306 101 48 chr1 100406452 100407438 -142256915 + L2 LINE L2 1988 3089 -183 475 304 42 111 chr1 100407452 100407481 -142256872 - L2 LINE L2 -13 3259 3230 1987 156 0 0 chr1 100407481 100407782 -142256571 + AluJb SINE Alu 1 301 -11 475 304 42 111 chr1 100407782 100408071 -142256282 - L2 LINE L2 -42 3230 2976 2333 109 0 0 chr1 100408071 100408383 -142255970 - AluSx SINE Alu 0 312 1 475 304 42 111 chr1 100408383 100408497 -142255856 - L2 LINE L2 -296 2976 2856 2939 67 41 8 chr1 100408502 100408889 -142255464 + MLT2A1 LTR ERVL 1 400 -44 230 143 0 0 chr1 100408891 100408933 -142255420 - LTR66 LTR ERVL -171 439 398 247 229 0 62 chr1 100408935 100409031 -142255322 + L1MC4 LINE L1 6614 6703 -1339 558 210 0 0 chr1 100409036 100409160 -142255193 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 417 73 0 0 chr1 100409160 100409215 -142255138 + MLT2A2 LTR ERVL 399 453 0 8930 68 2 11 chr1 100409215 100410356 -142253997 + HERVL-A2 LTR ERVL 1 1130 -4524 1557 151 0 4 chr1 100410356 100410588 -142253765 + AluSx SINE Alu 1 231 -81 2262 98 3 3 chr1 100410621 100410917 -142253436 + AluSq SINE Alu 1 296 -17 3857 54 0 25 chr1 100410920 100411405 -142252948 + HERVL LTR ERVL 1128 1600 -4054 * 15057 68 2 13 chr1 100411401 100413291 -142251062 + HERVL LTR ERVL 2319 4187 -1467 6184 62 17 0 chr1 100413279 100414059 -142250294 + HERVL LTR ERVL 4477 5269 -385 * 350 268 82 82 chr1 100414192 100414483 -142249870 - L1M2 LINE L1 -5875 974 684 953 151 0 0 chr1 100415084 100415223 -142249130 - FRAM SINE Alu -12 164 26 325 237 186 17 chr1 100416046 100416164 -142248189 + MIR SINE MIR 96 233 -29 203 259 37 37 chr1 100416234 100416315 -142248038 - L2 LINE L2 -1103 2211 2131 * 1276 267 57 30 chr1 100416295 100416896 -142247457 + L2 LINE L2 2680 3308 -5 4428 132 9 11 chr1 100417079 100417740 -142246613 - Tigger1 DNA MER2_type -1758 660 1 2525 210 54 63 chr1 100417740 100417815 -142246538 + L1ME1 LINE L1 5487 5561 -605 2098 97 10 13 chr1 100417815 100418113 -142246240 - AluSx SINE Alu -7 305 9 2525 210 54 63 chr1 100418113 100418526 -142245827 + L1ME1 LINE L1 5561 5971 -195 2225 84 7 7 chr1 100418526 100418834 -142245519 - AluSq SINE Alu 0 308 1 2525 210 54 63 chr1 100418834 100419029 -142245324 + L1ME1 LINE L1 5971 6166 0 478 186 23 0 chr1 100419034 100419120 -142245233 + AluJ/FLAM SINE Alu 2 89 -223 2618 131 14 2 chr1 100419638 100420051 -142244302 + HERVL-A1 LTR ERVL 5237 5654 0 3335 77 42 7 chr1 100420051 100420480 -142243873 + MLT2A1 LTR ERVL 1 444 0 467 341 38 52 chr1 100420486 100420852 -142243501 - L2 LINE L2 -466 2848 2488 207 186 0 0 chr1 100421348 100421391 -142242962 + T-rich Low_complexity Low_complexity 1 43 0 513 300 142 12 chr1 100421391 100421638 -142242715 - L2 LINE L2 -923 2391 2113 191 255 101 74 chr1 100421903 100422052 -142242301 + L2 LINE L2 3130 3282 -31 2099 128 7 0 chr1 100422293 100422581 -142241772 - AluSx SINE Alu -22 290 1 701 187 14 7 chr1 100422924 100423063 -142241290 + MSTD LTR MaLR 256 395 -1 1359 221 47 64 chr1 100423063 100423494 -142240859 - L1M4 LINE L1 -962 5184 4760 2072 124 28 0 chr1 100423494 100423785 -142240568 - AluSx SINE Alu -13 299 1 1359 221 47 64 chr1 100423785 100423838 -142240515 - L1M4 LINE L1 -1386 4760 4708 511 167 115 0 chr1 100423982 100424078 -142240275 - FRAM SINE Alu -32 144 38 987 214 11 34 chr1 100424140 100424402 -142239951 - L1M4 LINE L1 -1398 4748 4493 2009 85 0 0 chr1 100424779 100425025 -142239328 + AluSx SINE Alu 1 246 -66 22 0 0 0 chr1 100425428 100425450 -142238903 + AT_rich Low_complexity Low_complexity 1 22 0 2302 85 16 3 chr1 100425581 100425888 -142238465 + AluSq SINE Alu 1 311 -2 208 89 22 44 chr1 100426211 100426256 -142238097 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 317 331 15 23 chr1 100426475 100426605 -142237748 - L2 LINE L2 -5 3308 3180 529 311 17 17 chr1 100426796 100426973 -142237380 + MIR SINE MIR 16 192 -70 195 182 355 27 chr1 100427354 100427464 -142236889 + L2 LINE L2 2367 2512 -802 1823 223 138 41 chr1 100427680 100428218 -142236135 + MLT1E2 LTR MaLR 37 626 0 221 341 23 11 chr1 100428428 100428516 -142235837 + L2 LINE L2 2981 3069 -203 710 289 107 84 chr1 100428521 100429568 -142234785 - L2 LINE L2 -1 3312 2257 3688 67 18 2 chr1 100429568 100430014 -142234339 - MLT2A2 LTR ERVL 0 453 1 9421 77 7 1 chr1 100430014 100431202 -142233151 - HERVL-A2 LTR ERVL 0 5654 4460 2274 100 3 0 chr1 100431272 100431571 -142232782 - AluSx SINE Alu -7 305 6 288 291 102 8 chr1 100431649 100431776 -142232577 + L2 LINE L2 3132 3270 -2 298 242 112 36 chr1 100431844 100432022 -142232331 + L1ME4a LINE L1 5936 6746 -38 357 158 40 26 chr1 100432499 100432575 -142231778 - MER116 DNA Mariner 0 80 4 188 214 18 0 chr1 100433448 100433504 -142230849 + GA-rich Low_complexity Low_complexity 2 58 0 237 111 0 0 chr1 100434195 100434231 -142230122 - AluJb SINE Alu -7 295 260 1231 149 0 5 chr1 100434232 100434420 -142229933 - AluJb SINE Alu -125 187 1 1669 219 68 24 chr1 100434448 100434863 -142229490 + MLT1D LTR MaLR 1 433 -72 1816 113 0 4 chr1 100434863 100435103 -142229250 + AluSx SINE Alu 43 281 -31 510 288 47 91 chr1 100435353 100435627 -142228726 - L2 LINE L2 -3 3269 3008 244 271 119 0 chr1 100435635 100435694 -142228659 - L2 LINE L2 -61 3211 3146 333 295 98 0 chr1 100436740 100436852 -142227501 - MER5A DNA MER1_type 0 189 67 948 107 0 0 chr1 100436910 100437041 -142227312 - AluSg/x SINE Alu -6 304 174 289 359 33 58 chr1 100437404 100437617 -142226736 + L1MEd LINE L1 322 524 -5595 2952 82 0 3 chr1 100437617 100437973 -142226380 + THE1A LTR MaLR 1 355 0 289 359 33 58 chr1 100437973 100438118 -142226235 + L1MEd LINE L1 524 671 -5448 272 295 155 16 chr1 100438139 100438268 -142226085 + MLT1H LTR MaLR 8 154 -395 242 302 0 35 chr1 100438587 100438673 -142225680 + MLT1H-int LTR MaLR 798 880 -491 332 265 131 92 chr1 100438807 100439134 -142225219 + MLT1H-int LTR MaLR 942 1290 -81 2289 89 10 0 chr1 100439134 100439427 -142224926 - AluSx SINE Alu -12 300 5 332 265 131 92 chr1 100439427 100439511 -142224842 + MLT1H-int LTR MaLR 1290 1369 -2 361 289 42 118 chr1 100439515 100439948 -142224405 + MLT1H LTR MaLR 3 402 -147 2149 116 3 0 chr1 100440346 100440638 -142223715 - AluSx SINE Alu -19 293 1 589 290 51 54 chr1 100440672 100440948 -142223405 + MLT1J LTR MaLR 1 275 -236 641 212 185 0 chr1 100440991 100441142 -142223211 - MER5A DNA MER1_type 0 189 11 373 293 202 5 chr1 100441947 100442145 -142222208 + MIR SINE MIR 20 256 -6 2217 104 3 0 chr1 100442191 100442478 -142221875 - AluSq SINE Alu -25 288 1 1281 315 90 37 chr1 100442665 100443500 -142220853 - L2 LINE L2 -1208 2106 1228 2023 150 61 17 chr1 100443526 100443885 -142220468 - THE1C LTR MaLR 0 375 1 1853 193 70 31 chr1 100443950 100444008 -142220345 + MER63B DNA MER1_type 5 59 -1003 1735 155 7 40 chr1 100444008 100444312 -142220041 - AluJb SINE Alu -18 294 1 1853 193 70 31 chr1 100444312 100444667 -142219686 + MER63B DNA MER1_type 59 434 -2 354 23 0 0 chr1 100445654 100445697 -142218656 + (CA)n Simple_repeat Simple_repeat 2 44 0 5130 103 4 0 chr1 100445916 100446602 -142217751 + L1PA16 LINE L1 5469 6157 -9 2140 103 0 24 chr1 100446739 100447059 -142217294 - AluSp SINE Alu 0 313 1 487 317 81 18 chr1 100447271 100447492 -142216861 + MIR SINE MIR 2 236 -26 337 345 40 34 chr1 100447893 100448041 -142216312 + MIR SINE MIR 7 155 -107 2283 114 0 3 chr1 100448055 100448363 -142215990 + AluSx SINE Alu 1 307 -5 385 255 0 38 chr1 100448435 100448541 -142215812 + MIR SINE MIR 160 261 -1 364 301 101 75 chr1 100448907 100448959 -142215394 - L2 LINE L2 -41 3231 3182 2153 117 3 3 chr1 100448959 100449257 -142215096 + AluSx SINE Alu 1 298 -14 364 301 101 75 chr1 100449257 100449517 -142214836 - L2 LINE L2 -90 3182 2905 315 85 0 0 chr1 100449517 100449564 -142214789 + (TG)n Simple_repeat Simple_repeat 1 47 0 364 301 101 75 chr1 100449564 100449635 -142214718 - L2 LINE L2 -367 2905 2837 669 280 59 113 chr1 100450282 100450584 -142213769 + L2 LINE L2 2006 2270 -1044 1274 227 42 79 chr1 100450584 100450989 -142213364 + MLT1B LTR MaLR 1 390 0 669 280 59 113 chr1 100450989 100451197 -142213156 + L2 LINE L2 2270 2488 -826 369 302 146 32 chr1 100451197 100451493 -142212860 + L2 LINE L2 2654 2994 -278 2200 122 0 0 chr1 100452648 100452943 -142211410 + AluSq SINE Alu 4 298 -15 285 247 0 43 chr1 100452943 100453036 -142211317 - L1MC4 LINE L1 -1340 6702 6614 242 271 0 62 chr1 100453052 100453148 -142211205 - L1MC4 LINE L1 -1339 6703 6614 285 238 48 0 chr1 100453183 100453267 -142211086 + L1MC4 LINE L1 6613 6700 -1342 232 143 0 0 chr1 100453309 100453351 -142211002 - LTR66 LTR ERVL -171 439 398 213 175 0 0 chr1 100453352 100453392 -142210961 + (TA)n Simple_repeat Simple_repeat 1 40 0 455 299 70 20 chr1 100453608 100453809 -142210544 - MIR SINE MIR -6 256 46 205 250 21 0 chr1 100454021 100454069 -142210284 - L2 LINE L2 -8 3305 3257 2416 84 0 0 chr1 100454200 100454508 -142209845 + AluSq SINE Alu 1 308 -5 529 117 0 0 chr1 100454586 100454663 -142209690 + AluS SINE Alu 227 303 -6 304 296 78 62 chr1 100455010 100455189 -142209164 + MLT1K LTR MaLR 189 370 -218 2197 107 10 0 chr1 100455791 100456090 -142208263 - AluSx SINE Alu -10 302 1 249 313 55 39 chr1 100456137 100456227 -142208126 + MIR SINE MIR 110 204 -58 2053 134 0 3 chr1 100456227 100456532 -142207821 + AluSx SINE Alu 1 304 -8 249 313 55 39 chr1 100456532 100456569 -142207784 + MIR SINE MIR 204 239 -23 200 204 20 20 chr1 100456580 100456629 -142207724 + (TGG)n Simple_repeat Simple_repeat 3 51 0 1517 167 27 4 chr1 100457780 100458037 -142206316 - AluJb SINE Alu -23 289 27 5799 70 12 0 chr1 100458037 100458719 -142205634 + LTR8 LTR ERV1 2 691 0 13670 71 32 4 chr1 100458724 100460493 -142203860 + HUERS-P1 LTR ERV1 19 1836 -4427 * 21728 57 11 16 chr1 100460490 100462169 -142202184 + HUERS-P1 LTR ERV1 3475 5161 -1102 2047 89 0 14 chr1 100462169 100462449 -142201904 - AluY SINE Alu -14 297 22 21728 57 11 16 chr1 100462449 100462930 -142201423 + HUERS-P1 LTR ERV1 5161 5643 -620 2165 112 7 0 chr1 100462930 100463225 -142201128 + AluSx SINE Alu 1 297 -15 21728 57 11 16 chr1 100463225 100463553 -142200800 + HUERS-P1 LTR ERV1 5643 5971 -292 2279 90 0 7 chr1 100463553 100463852 -142200501 + AluSc SINE Alu 1 297 -12 2204 111 0 3 chr1 100463852 100464148 -142200205 + AluY SINE Alu 1 296 -15 21728 57 11 16 chr1 100464148 100464459 -142199894 + HUERS-P1 LTR ERV1 5969 6263 0 5990 67 0 0 chr1 100464459 100465150 -142199203 + LTR8 LTR ERV1 1 691 0 186 103 0 0 chr1 100465572 100465601 -142198752 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 231 262 0 0 chr1 100465602 100465644 -142198709 + MER68 LTR ERV1 237 278 -284 709 189 16 0 chr1 100465646 100465768 -142198585 + FLAM_A SINE Alu 4 127 -6 21 0 0 0 chr1 100465768 100465789 -142198564 + AT_rich Low_complexity Low_complexity 1 21 0 2058 136 0 3 chr1 100465796 100466098 -142198255 + AluSx SINE Alu 1 301 -11 1088 237 48 21 chr1 100466107 100466398 -142197955 + MER77 LTR ERV1 303 601 -4 427 223 98 36 chr1 100466647 100466759 -142197594 - MIR SINE MIR -132 130 12 201 290 0 16 chr1 100466870 100466932 -142197421 + CT-rich Low_complexity Low_complexity 6 66 0 215 348 43 35 chr1 100466987 100467102 -142197251 - L2 LINE L2 -773 2541 2426 2607 226 32 29 chr1 100467218 100467287 -142197066 - L1ME2 LINE L1 -55 6109 6042 934 212 0 18 chr1 100467287 100467457 -142196896 + FAM SINE Alu 1 167 -8 333 0 0 0 chr1 100467461 100467498 -142196855 + (TG)n Simple_repeat Simple_repeat 2 38 0 2607 226 32 29 chr1 100467498 100468103 -142196250 - L1ME2 LINE L1 -124 6040 5428 1479 214 8 30 chr1 100468111 100468443 -142195910 - L1ME1 LINE L1 -5 6161 5823 2042 213 72 40 chr1 100468443 100468714 -142195639 - LTR40a LTR ERVL 0 519 258 188 0 74 0 chr1 100468714 100468741 -142195612 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1521 182 29 29 chr1 100468741 100469021 -142195332 - AluJb SINE Alu -32 280 1 2042 213 72 40 chr1 100469021 100469231 -142195122 - LTR40a LTR ERVL -261 258 18 2638 48 3 3 chr1 100469231 100469540 -142194813 - AluSp SINE Alu -4 309 1 2042 213 72 40 chr1 100469540 100469559 -142194794 - LTR40a LTR ERVL -501 18 1 1479 214 8 30 chr1 100469559 100469591 -142194762 - L1ME1 LINE L1 -343 5823 5805 624 114 43 14 chr1 100469597 100469737 -142194616 + CT-rich Low_complexity Low_complexity 2 145 0 2432 55 0 32 chr1 100469799 100470111 -142194242 + AluY SINE Alu 1 302 -9 1367 101 0 0 chr1 100470111 100470289 -142194064 + AluSg/x SINE Alu 132 309 -1 4401 209 127 32 chr1 100470293 100470715 -142193638 - L1ME1 LINE L1 -586 5592 5211 2431 80 0 10 chr1 100470715 100471026 -142193327 - AluY SINE Alu -3 308 1 2286 106 3 0 chr1 100471030 100471332 -142193021 - AluSp SINE Alu -10 303 1 4401 209 127 32 chr1 100471332 100472341 -142192012 - L1ME1 LINE L1 -969 5209 4020 248 143 18 0 chr1 100472501 100472557 -142191796 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 311 251 140 47 chr1 100473134 100473305 -142191048 - MER5A DNA MER1_type -2 187 1 2099 82 39 0 chr1 100473305 100473584 -142190769 + AluSg SINE Alu 1 290 -20 506 77 0 0 chr1 100473605 100473670 -142190683 - MER41A LTR ERV1 0 554 490 4087 76 9 10 chr1 100473673 100474231 -142190122 - MER41A LTR ERV1 -5 549 1 221 379 0 10 chr1 100474585 100474688 -142189665 + MIR SINE MIR 46 147 -61 229 312 121 25 chr1 100474722 100474910 -142189443 - MIR SINE MIR -51 211 4 225 163 47 0 chr1 100475310 100475353 -142189000 - MIR SINE MIR -93 169 125 562 174 68 63 chr1 100475447 100475621 -142188732 - LTR48 LTR ERV1 0 768 488 380 336 70 35 chr1 100475717 100475946 -142188407 - MIR SINE MIR -6 256 20 372 250 73 0 chr1 100476007 100476103 -142188250 + MER34 LTR ERV1 24 126 -416 317 156 13 78 chr1 100476085 100476162 -142188191 + LTR29 LTR ERV1 137 208 -414 * 698 204 124 40 chr1 100476140 100476233 -142188120 + LTR48B LTR ERV1 84 168 -476 3780 71 11 0 chr1 100476233 100476681 -142187672 - MLT2A2 LTR ERVL 0 453 1 698 204 124 40 chr1 100476681 100476812 -142187541 + LTR48B LTR ERV1 168 327 -317 1265 135 78 43 chr1 100476873 100476998 -142187355 + AluSx SINE Alu 60 198 -114 5393 79 31 0 chr1 100476998 100477668 -142186685 - LTR8 LTR ERV1 0 691 1 1265 135 78 43 chr1 100477668 100477772 -142186581 + AluSx SINE Alu 198 297 -15 937 186 40 35 chr1 100477774 100478000 -142186353 + LTR48B LTR ERV1 400 626 -18 201 290 21 32 chr1 100478217 100478310 -142186043 + MIR SINE MIR 6 97 -165 288 0 0 0 chr1 100479416 100479448 -142184905 + (CTTG)n Simple_repeat Simple_repeat 2 33 0 1060 157 17 0 chr1 100479482 100479654 -142184699 - AluY SINE Alu -7 304 130 476 271 77 33 chr1 100480147 100480328 -142184025 + MER5A DNA MER1_type 1 189 0 4499 151 124 18 chr1 100480388 100480733 -142183620 - MER4D LTR ERV1 -2 901 594 2138 111 7 7 chr1 100480733 100481031 -142183322 + AluSx SINE Alu 1 298 -14 4499 151 124 18 chr1 100481031 100481500 -142182853 - MER4D LTR ERV1 -309 594 1 12911 33 1 1 chr1 100481632 100483843 -142180510 - L1PA5 LINE L1 -16 6138 3925 14753 182 44 17 chr1 100484032 100487179 -142177174 + L1MA3 LINE L1 3513 6749 -816 1060 148 0 45 chr1 100487195 100487371 -142176982 + AluJb SINE Alu 5 172 -140 6245 103 7 14 chr1 100487371 100487429 -142176924 + L1MA3 LINE L1 6761 6818 -906 2081 141 3 0 chr1 100487429 100487735 -142176618 + AluSx SINE Alu 1 307 -5 6245 103 7 14 chr1 100487735 100488625 -142175728 + L1MA3 LINE L1 6818 7712 -12 1561 129 58 116 chr1 100488625 100488660 -142175693 - THE1C LTR MaLR 0 375 340 2303 90 0 7 chr1 100488660 100488959 -142175394 + AluSq SINE Alu 10 306 -7 1561 129 58 116 chr1 100488959 100489282 -142175071 - THE1C LTR MaLR -35 340 40 1882 58 78 0 chr1 100489282 100489524 -142174829 + AluY SINE Alu 39 299 -12 1561 129 58 116 chr1 100489524 100489560 -142174793 - THE1C LTR MaLR -335 40 3 6245 103 7 14 chr1 100489560 100489588 -142174765 + L1MA3 LINE L1 7712 7724 0 2269 89 0 26 chr1 100489751 100490054 -142174299 - AluSx SINE Alu -16 296 2 294 309 117 0 chr1 100490427 100490521 -142173832 - MIR SINE MIR -74 188 84 2160 106 33 13 chr1 100490572 100490753 -142173600 - AluSp SINE Alu -6 307 116 203 0 37 0 chr1 100490753 100490780 -142173573 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2160 106 33 13 chr1 100490780 100490899 -142173454 - AluSp SINE Alu -197 116 1 2037 173 111 38 chr1 100491041 100491640 -142172713 - MER39 LTR ERV1 -6 701 1 1420 235 59 35 chr1 100491672 100492178 -142172175 + MER39 LTR ERV1 5 595 0 624 160 46 8 chr1 100492295 100492426 -142171927 - MER33 DNA MER1_type 0 363 228 1270 152 34 112 chr1 100492426 100492749 -142171604 - AluJb SINE Alu -3 299 2 1250 70 6 58 chr1 100492787 100492958 -142171395 - AluSp SINE Alu -151 162 1 371 128 58 12 chr1 100492960 100493046 -142171307 - MER33 DNA MER1_type -134 229 140 318 306 0 31 chr1 100493013 100493111 -142171242 - MER33 DNA MER1_type -229 95 1 * 2515 69 0 0 chr1 100493144 100493447 -142170906 + AluY SINE Alu 1 303 -8 2106 72 29 25 chr1 100493447 100493725 -142170628 + AluSc SINE Alu 1 279 -30 1778 149 3 14 chr1 100493789 100494077 -142170276 + AluJo SINE Alu 3 287 -25 1865 176 3 0 chr1 100494146 100494448 -142169905 + AluJb SINE Alu 5 307 -5 226 227 30 15 chr1 100495130 100495196 -142169157 - L2 LINE L2 0 3272 3206 236 339 25 33 chr1 100496269 100496390 -142167963 - MIR3 SINE MIR -19 189 70 363 250 30 10 chr1 100496854 100496954 -142167399 + MIR SINE MIR 47 148 -114 22 70 0 0 chr1 100497126 100497169 -142167184 + AT_rich Low_complexity Low_complexity 1 43 0 290 167 0 30 chr1 100497773 100497839 -142166514 + GA-rich Low_complexity Low_complexity 4 67 0 397 266 94 73 chr1 100498730 100498788 -142165565 + L2 LINE L2 2583 2638 -676 668 268 84 5 chr1 100498788 100498978 -142165375 - MER63A DNA MER1_type -4 206 2 397 266 94 73 chr1 100498978 100499152 -142165201 + L2 LINE L2 2638 2820 -494 514 250 154 67 chr1 100499267 100499623 -142164730 + MLT1I LTR MaLR 7 393 -16 6524 147 45 85 chr1 100499623 100500141 -142164212 - Charlie1a DNA MER1_type -1306 1455 918 1817 120 50 17 chr1 100500141 100500440 -142163913 - AluSx SINE Alu -3 309 1 6524 147 45 85 chr1 100500440 100501434 -142162919 - Charlie1a DNA MER1_type -1843 918 3 329 339 98 38 chr1 100501456 100501772 -142162581 + L2 LINE L2 2935 3269 -3 376 303 9 18 chr1 100502193 100502302 -142162051 + L2 LINE L2 3157 3264 -8 377 221 264 14 chr1 100502581 100502721 -142161632 + MER5B DNA MER1_type 4 178 0 711 325 16 4 chr1 100503859 100504108 -142160245 + MIR SINE MIR 3 254 -8 758 232 18 6 chr1 100504431 100504599 -142159754 + MLT1J2 LTR MaLR 41 210 -240 309 270 4 4 chr1 100504663 100504754 -142159599 + MLT1J2 LTR MaLR 312 406 -44 720 156 25 0 chr1 100504971 100505093 -142159260 + AluJo SINE Alu 12 136 -176 13094 89 24 28 chr1 100505100 100507114 -142157239 + L1P3 LINE L1 1 2046 -4415 2360 80 6 0 chr1 100507114 100507427 -142156926 + L1PA7 LINE L1 5840 6154 0 13094 89 24 28 chr1 100507427 100507438 -142156915 + L1P3 LINE L1 2046 2056 -4405 554 269 33 6 chr1 100507650 100507832 -142156521 + MIR SINE MIR 76 262 0 222 309 118 0 chr1 100507851 100507961 -142156392 - L2 LINE L2 -1 3312 3190 223 234 62 16 chr1 100508565 100508629 -142155724 - L3 LINE CR1 -3 1574 1508 3253 120 41 0 chr1 100508983 100509476 -142154877 + MER75 DNA T2_type 1 513 -1 2433 78 7 3 chr1 100509497 100509804 -142154549 + AluSg SINE Alu 3 310 0 1840 176 92 77 chr1 100509999 100510509 -142153844 + MLT2B3 LTR ERVL 1 521 -33 263 28 28 0 chr1 100510509 100510545 -142153808 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1840 176 92 77 chr1 100510545 100510580 -142153773 + MLT2B3 LTR ERVL 521 554 0 363 292 19 16 chr1 100510610 100510747 -142153606 + MIR3 SINE MIR 34 173 -35 672 291 57 0 chr1 100510803 100511013 -142153340 + MIR SINE MIR 41 262 0 22 35 0 0 chr1 100511163 100511192 -142153161 + AT_rich Low_complexity Low_complexity 1 29 0 1740 179 7 0 chr1 100511192 100511498 -142152855 + AluJo SINE Alu 1 308 0 237 203 85 0 chr1 100511499 100511558 -142152795 - MIR SINE MIR -43 219 156 2225 98 6 16 chr1 100512051 100512366 -142151987 + AluSp SINE Alu 1 312 -1 236 217 101 0 chr1 100512962 100513031 -142151322 + MLT1K LTR MaLR 498 573 -15 1008 245 70 67 chr1 100514189 100514788 -142149565 + L1ME4a LINE L1 5520 6120 -1 201 175 0 0 chr1 100514799 100514839 -142149514 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 234 87 0 0 chr1 100514860 100514906 -142149447 + LTR66 LTR ERVL 394 439 -171 1710 108 124 12 chr1 100514913 100515171 -142149182 - AluSg SINE Alu -23 287 1 701 279 49 18 chr1 100515411 100515637 -142148716 - MIR SINE MIR -8 254 22 2125 101 11 3 chr1 100515723 100516009 -142148344 - AluSx SINE Alu -24 288 1 191 303 26 0 chr1 100516192 100516268 -142148085 - MIR3 SINE MIR -54 154 77 842 253 22 31 chr1 100516315 100516540 -142147813 - MLT1K LTR MaLR 0 588 366 235 257 162 9 chr1 100516802 100516907 -142147446 - L1M4 LINE L1 -1334 6231 6111 184 98 24 24 chr1 100516909 100516950 -142147403 + (TTC)n Simple_repeat Simple_repeat 3 43 0 3125 231 84 10 chr1 100516956 100517414 -142146939 - L1ME1 LINE L1 -5 6161 5738 2099 150 3 0 chr1 100517414 100517720 -142146633 - AluSx SINE Alu -5 307 1 3125 231 84 10 chr1 100517720 100518096 -142146257 - L1ME1 LINE L1 -428 5738 5391 9318 88 41 0 chr1 100518096 100519332 -142145021 - HSMAR1 DNA Mariner 0 1287 1 3125 231 84 10 chr1 100519332 100519458 -142144895 - L1ME1 LINE L1 -775 5391 5276 2365 101 0 0 chr1 100519458 100519764 -142144589 - AluSc SINE Alu -3 306 1 3125 231 84 10 chr1 100519764 100519854 -142144499 - L1ME1 LINE L1 -890 5276 5042 * 8437 136 45 16 chr1 100519836 100519855 -142144498 - L1M4 LINE L1 -2963 4602 4585 2233 109 3 13 chr1 100519855 100520168 -142144185 - AluSg SINE Alu 0 310 1 8437 136 45 16 chr1 100520168 100521351 -142143002 - L1M4 LINE L1 -2980 4585 3437 2131 122 37 0 chr1 100521351 100521647 -142142706 - AluSx SINE Alu -5 307 1 8437 136 45 16 chr1 100521647 100522786 -142141567 - L1M4 LINE L1 -4128 3437 2203 3726 185 18 39 chr1 100522778 100523303 -142141050 - L1M4 LINE L1 -6842 723 216 * 2219 110 0 35 chr1 100523303 100523613 -142140740 - AluSx SINE Alu -11 301 3 3726 185 18 39 chr1 100523613 100523813 -142140540 - L1M4 LINE L1 -7349 216 13 453 117 26 0 chr1 100523818 100523895 -142140458 + L1 LINE L1 4005 4083 -2063 3201 153 13 31 chr1 100523901 100524457 -142139896 - Tigger1 DNA MER2_type -1807 611 66 3066 208 69 9 chr1 100524479 100525343 -142139010 - L1 LINE L1 -2728 3418 2503 881 191 0 13 chr1 100525345 100525497 -142138856 - AluJo SINE Alu -162 150 1 262 368 21 10 chr1 100525504 100525649 -142138704 - MIR SINE MIR -64 144 36 2164 113 0 0 chr1 100526240 100526524 -142137829 + AluSx SINE Alu 21 304 -8 550 301 131 18 chr1 100527312 100527594 -142136759 - LTR16C LTR ERVL -10 481 168 559 293 38 19 chr1 100527936 100528148 -142136205 + MIR SINE MIR 47 262 0 22 0 0 0 chr1 100529257 100529279 -142135074 + AT_rich Low_complexity Low_complexity 1 22 0 259 289 13 13 chr1 100530370 100530446 -142133907 - L2 LINE L2 -7 3265 3190 197 240 0 20 chr1 100531061 100531111 -142133242 - MER5A DNA MER1_type -121 68 20 186 303 76 110 chr1 100531194 100531458 -142132895 - L2 LINE L2 -509 2805 2551 2584 83 118 2 chr1 100531726 100532124 -142132229 - MLT2A1 LTR ERVL 0 444 1 2120 174 42 68 chr1 100532457 100532551 -142131802 + MLT1D LTR MaLR 1 96 -409 1635 194 128 24 chr1 100532551 100532806 -142131547 - MLT1C LTR MaLR 0 467 240 2436 62 3 0 chr1 100532806 100533096 -142131257 - AluY SINE Alu -20 291 1 1635 194 128 24 chr1 100533096 100533263 -142131090 - MLT1C LTR MaLR -227 240 1 2120 174 42 68 chr1 100533263 100533371 -142130982 + MLT1D LTR MaLR 96 205 -300 2569 4 0 0 chr1 100533371 100533642 -142130711 + AluYa5 SINE Alu 37 307 -4 2120 174 42 68 chr1 100533642 100533956 -142130397 + MLT1D LTR MaLR 205 505 0 4064 145 18 37 chr1 100534061 100534207 -142130146 - MER50 LTR ERV1 -23 711 564 2015 94 7 24 chr1 100534207 100534514 -142129839 + AluSp SINE Alu 1 302 0 4064 145 18 37 chr1 100534514 100535091 -142129262 - MER50 LTR ERV1 -170 564 1 204 213 0 0 chr1 100535832 100535879 -142128474 + T-rich Low_complexity Low_complexity 4 50 0 1647 160 43 7 chr1 100536903 100537185 -142127168 - AluJb SINE Alu -20 292 1 195 286 0 0 chr1 100537248 100537290 -142127063 - MIR SINE MIR -55 153 112 499 255 52 86 chr1 100537394 100537684 -142126669 - Charlie8 DNA MER1_type -2137 280 1 254 184 20 0 chr1 100537698 100537747 -142126606 - L2 LINE L2 -17 3255 3206 592 160 0 9 chr1 100537884 100537990 -142126363 + L1MB3 LINE L1 6077 6181 -2 644 235 22 33 chr1 100538257 100538440 -142125913 - MIR SINE MIR -34 228 48 24 0 0 0 chr1 100540275 100540299 -142124054 + AT_rich Low_complexity Low_complexity 1 24 0 293 247 63 111 chr1 100540696 100540947 -142123406 - MLT1L LTR MaLR -52 536 321 2350 104 0 19 chr1 100541007 100541325 -142123028 - AluSx SINE Alu 0 312 1 405 0 0 0 chr1 100542621 100542666 -142121687 + (TG)n Simple_repeat Simple_repeat 2 46 0 410 309 0 0 chr1 100542666 100542977 -142121376 + (TA)n Simple_repeat Simple_repeat 1 311 0 259 273 23 0 chr1 100542978 100543066 -142121287 - L1MC4 LINE L1 -1339 6703 6614 378 171 0 0 chr1 100543068 100543138 -142121215 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 311 303 0 0 chr1 100543138 100543227 -142121126 - L1MC4 LINE L1 -1339 6703 6615 231 253 21 42 chr1 100543237 100543332 -142121021 - L1MC4 LINE L1 -1336 6706 6614 279 224 30 0 chr1 100543336 100543403 -142120950 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 234 216 68 45 chr1 100543403 100543491 -142120862 - L1MC4 LINE L1 -1336 6706 6617 211 256 0 0 chr1 100543493 100543536 -142120817 + (TA)n Simple_repeat Simple_repeat 2 44 0 301 167 71 0 chr1 100543536 100543620 -142120733 + L1MC4 LINE L1 6614 6703 -1339 326 157 0 14 chr1 100543620 100543690 -142120663 + (TA)n Simple_repeat Simple_repeat 1 69 0 770 165 24 0 chr1 100543724 100543851 -142120502 - FLAM_A SINE Alu -3 130 1 807 267 46 4 chr1 100543936 100544176 -142120177 - MIR SINE MIR -11 251 2 227 256 109 25 chr1 100544405 100544553 -142119800 - MIR SINE MIR -62 146 38 365 303 20 56 chr1 100545392 100545587 -142118766 - MIR SINE MIR -5 257 70 928 103 0 48 chr1 100547058 100547203 -142117150 + L1MC1 LINE L1 6181 6318 -15 507 233 87 24 chr1 100547750 100548087 -142116266 - MLT1J2 LTR MaLR -4 422 73 1786 174 3 7 chr1 100548601 100548906 -142115447 + AluJb SINE Alu 1 304 -8 250 263 0 0 chr1 100551084 100551141 -142113212 + L2 LINE L2 3207 3263 -9 228 111 0 0 chr1 100551234 100551270 -142113083 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 11575 41 4 6 chr1 100553268 100554640 -142109713 + HERV17 LTR ERV1 4651 6019 -2607 2384 55 3 0 chr1 100554663 100554953 -142109400 + HERV17 LTR ERV1 8336 8626 0 2860 34 0 0 chr1 100554953 100555279 -142109074 + LTR17 LTR ERV1 1 326 -454 219 69 0 0 chr1 100555279 100555308 -142109045 + (A)n Simple_repeat Simple_repeat 1 29 0 2026 113 32 3 chr1 100555320 100555604 -142108749 + AluSq SINE Alu 1 292 -21 1639 171 10 101 chr1 100555997 100556395 -142107958 - MLT1A1 LTR MaLR 0 365 4 25 51 0 0 chr1 100556710 100556749 -142107604 + AT_rich Low_complexity Low_complexity 1 39 0 31948 107 21 57 chr1 100556830 100563207 -142101146 - L1PA7 LINE L1 -4 6150 12 2086 142 129 5 chr1 100563833 100564214 -142100139 - MSTA LTR MaLR 0 428 1 1955 148 9 31 chr1 100564534 100564852 -142099501 + AluJb SINE Alu 1 311 -1 548 300 65 33 chr1 100565351 100565748 -142098605 + L2 LINE L2 24 433 -2881 221 256 110 0 chr1 100565750 100565832 -142098521 + L2 LINE L2 949 1039 -2275 1570 262 151 23 chr1 100565832 100566767 -142097586 + L2 LINE L2 2225 3294 -19 283 291 23 0 chr1 100566917 100567003 -142097350 + L2 LINE L2 3185 3272 0 1380 172 0 13 chr1 100567179 100567412 -142096941 + AluJo SINE Alu 2 231 -81 1155 147 11 31 chr1 100568468 100568659 -142095694 + MER5A DNA MER1_type 1 187 -2 355 249 64 64 chr1 100569106 100569176 -142095177 - MIR SINE MIR -87 175 106 264 30 0 0 chr1 100569176 100569209 -142095144 + (TA)n Simple_repeat Simple_repeat 2 34 0 2412 104 0 0 chr1 100569209 100569516 -142094837 - AluSx SINE Alu -5 307 1 2059 146 0 3 chr1 100569519 100569814 -142094539 - AluJo SINE Alu -16 296 3 355 249 64 64 chr1 100569814 100569911 -142094442 - MIR SINE MIR -156 106 3 487 179 154 32 chr1 100572109 100572232 -142092121 + MER69 DNA AcHobo 267 404 -2122 950 202 46 21 chr1 100572317 100572612 -142091741 + MER69 DNA AcHobo 1967 2352 -174 2134 117 0 0 chr1 100572612 100572893 -142091460 - AluSg1 SINE Alu -27 282 2 950 202 46 21 chr1 100572893 100573073 -142091280 + MER69 DNA AcHobo 2352 2526 0 894 60 0 0 chr1 100573736 100573853 -142090500 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 1494 138 15 92 chr1 100573866 100574191 -142090162 + AluJb SINE Alu 1 300 -12 196 167 56 56 chr1 100576296 100576350 -142088003 + MIR SINE MIR 89 142 -66 242 233 39 10 chr1 100576368 100576471 -142087882 + (TA)n Simple_repeat Simple_repeat 1 106 0 1014 183 0 0 chr1 100576505 100576680 -142087673 - FRAM SINE Alu -2 174 1 349 305 43 21 chr1 100576701 100576842 -142087511 - MER5B DNA MER1_type -25 164 21 436 230 121 30 chr1 100576893 100576998 -142087355 + MER5A DNA MER1_type 4 132 -57 2012 131 0 0 chr1 100576998 100577321 -142087032 - AluSx SINE Alu 0 323 1 436 230 121 30 chr1 100577321 100577379 -142086974 + MER5A DNA MER1_type 132 183 -6 287 286 45 36 chr1 100577941 100578053 -142086300 - L3 LINE CR1 -30 1547 1435 1065 199 61 71 chr1 100578077 100578155 -142086198 + LTR56 LTR ERV1 10 87 -489 2070 108 4 4 chr1 100578155 100578470 -142085883 + AluSc SINE Alu 1 315 0 1065 199 61 71 chr1 100578470 100578591 -142085762 + LTR56 LTR ERV1 87 208 -368 2446 155 36 5 chr1 100578591 100579004 -142085349 - MSTB LTR MaLR 0 426 1 1065 199 61 71 chr1 100579004 100579258 -142085095 + LTR56 LTR ERV1 208 559 -17 1905 144 3 69 chr1 100579338 100579536 -142084817 - AluJb SINE Alu 0 312 143 2217 131 0 6 chr1 100579536 100579849 -142084504 - AluSx SINE Alu -1 311 1 1905 144 3 69 chr1 100579849 100579984 -142084369 - AluJb SINE Alu -169 143 1 730 129 22 36 chr1 100580232 100580371 -142083982 + LTR49 LTR ERV1 459 595 0 348 193 53 1 chr1 100580373 100580483 -142083870 + LTR49-int LTR ERV1 1 132 -6199 1075 72 43 0 chr1 100580495 100580634 -142083719 + MER51B LTR ERV1 1 145 -232 1634 162 194 14 chr1 100580647 100581064 -142083289 - LTR10A LTR ERV1 -61 548 13 20316 96 55 68 chr1 100581115 100584915 -142079438 - Harlequin LTR ERV1 -26 7759 930 588 261 108 60 chr1 100585128 100585481 -142078872 - Harlequin LTR ERV1 -5944 705 336 288 0 0 0 chr1 100585548 100585580 -142078773 + (CA)n Simple_repeat Simple_repeat 1 32 0 526 86 37 0 chr1 100585602 100585683 -142078670 + MER51-int LTR ERV1 2588 2671 -5145 37796 36 25 3 chr1 100585687 100590755 -142073598 + L1PA4 LINE L1 675 5862 -293 3437 31 17 2 chr1 100590755 100591200 -142073153 + L1PA4 LINE L1 5718 6170 0 4668 241 56 35 chr1 100591252 100592088 -142072265 - L1MB7 LINE L1 -15 6169 5353 2145 125 0 29 chr1 100592088 100592400 -142071953 - AluSx SINE Alu -9 303 1 4668 241 56 35 chr1 100592400 100592706 -142071647 - L1MB7 LINE L1 -831 5353 5055 2209 101 0 38 chr1 100592706 100593023 -142071330 - AluSq SINE Alu -7 306 2 4668 241 56 35 chr1 100593023 100593801 -142070552 - L1MB7 LINE L1 -1129 5055 4295 1923 176 0 0 chr1 100593801 100594113 -142070240 - AluJo SINE Alu 0 312 1 4668 241 56 35 chr1 100594113 100594298 -142070055 - L1MB7 LINE L1 -1889 4295 4115 2258 107 10 0 chr1 100594298 100594607 -142069746 + AluSp SINE Alu 1 312 -1 4668 241 56 35 chr1 100594607 100595427 -142068926 - L1MB7 LINE L1 -2069 4115 3164 1975 156 3 7 chr1 100595691 100595999 -142068354 - AluJb SINE Alu -5 307 1 896 302 117 19 chr1 100596097 100596776 -142067577 - L1MEc LINE L1 -4748 1859 926 966 202 0 6 chr1 100596779 100596947 -142067406 - FAM SINE Alu -8 167 1 687 315 39 23 chr1 100597948 100598330 -142066023 + L1MC5 LINE L1 6476 6872 -936 785 216 98 30 chr1 100598381 100598678 -142065675 + L1MC5 LINE L1 7612 7928 -33 2733 75 0 8 chr1 100598794 100599152 -142065201 + THE1A LTR MaLR 1 355 0 11756 90 2 11 chr1 100599152 100599616 -142064737 + THE1A-int LTR MaLR 1 468 -1112 2099 100 0 0 chr1 100599616 100599885 -142064468 + AluSx SINE Alu 28 296 -16 11756 90 2 11 chr1 100599885 100601014 -142063339 + THE1A-int LTR MaLR 468 1580 0 2724 85 3 0 chr1 100601014 100601368 -142062985 + THE1A LTR MaLR 1 355 0 30 27 0 0 chr1 100601899 100601936 -142062417 + AT_rich Low_complexity Low_complexity 1 37 0 1660 170 3 18 chr1 100602510 100602793 -142061560 - AluJo SINE Alu -22 290 12 22 0 0 0 chr1 100602953 100602975 -142061378 + AT_rich Low_complexity Low_complexity 1 22 0 393 253 214 96 chr1 100603268 100603497 -142060856 + MIR SINE MIR 3 258 -4 33 66 0 0 chr1 100604764 100604825 -142059528 + AT_rich Low_complexity Low_complexity 1 61 0 454 307 22 63 chr1 100605165 100605379 -142058974 + L2 LINE L2 2708 2909 -363 2407 81 7 0 chr1 100605379 100605689 -142058664 + AluSp SINE Alu 1 312 -1 454 307 22 63 chr1 100605689 100605717 -142058636 + L2 LINE L2 2909 2937 -335 198 0 0 0 chr1 100607837 100607859 -142056494 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 290 266 0 0 chr1 100608072 100608136 -142056217 - L2 LINE L2 0 3313 3250 22 0 0 0 chr1 100608807 100608829 -142055524 + AT_rich Low_complexity Low_complexity 1 22 0 250 159 43 87 chr1 100609217 100609286 -142055067 - MLT1J LTR MaLR -72 439 374 2013 119 0 7 chr1 100609407 100609715 -142054638 + AluSx SINE Alu 1 306 0 21 71 0 0 chr1 100609998 100610040 -142054313 + AT_rich Low_complexity Low_complexity 1 42 0 425 287 16 8 chr1 100610215 100610344 -142054009 + MIR3 SINE MIR 74 203 -5 31 0 0 0 chr1 100611271 100611302 -142053051 + AT_rich Low_complexity Low_complexity 1 31 0 272 281 12 37 chr1 100611610 100611692 -142052661 - L2 LINE L2 0 3313 3234 211 128 26 0 chr1 100611783 100611822 -142052531 + (CTA)n Simple_repeat Simple_repeat 2 41 0 217 284 0 74 chr1 100611937 100612032 -142052321 + MIR SINE MIR 110 197 -65 396 146 42 31 chr1 100613096 100613192 -142051161 + L1M1 LINE L1 15 111 -7454 226 154 0 0 chr1 100613208 100613247 -142051106 + L1M1 LINE L1 97 135 -7430 * 11760 123 44 63 chr1 100613244 100615480 -142048873 + L1M1 LINE L1 1417 3609 -3956 1276 199 0 9 chr1 100615481 100615712 -142048641 + AluJb SINE Alu 1 229 -83 3568 190 30 5 chr1 100615712 100616491 -142047862 + L1M1 LINE L1 3887 4684 -2881 6205 174 34 2 chr1 100618515 100619743 -142044610 + L1M1 LINE L1 4672 5939 -1626 7440 115 11 12 chr1 100619747 100619861 -142044492 + L1MA2 LINE L1 4353 4466 -1838 2244 122 0 0 chr1 100619861 100620172 -142044181 + AluSx SINE Alu 1 311 -1 7440 115 11 12 chr1 100620172 100622011 -142042342 + L1MA2 LINE L1 4466 6304 0 486 261 102 60 chr1 100622411 100622626 -142041727 + MIR SINE MIR 11 234 -28 2420 71 0 7 chr1 100622896 100623193 -142041160 + AluSg SINE Alu 1 295 -15 759 270 201 0 chr1 100623974 100624233 -142040120 + LTR16B LTR ERVL 3 313 -151 200 182 0 0 chr1 100624294 100624327 -142040026 + CT-rich Low_complexity Low_complexity 4 36 0 270 136 0 0 chr1 100624464 100624508 -142039845 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 234 229 0 31 chr1 100624545 100624707 -142039646 + CT-rich Low_complexity Low_complexity 1 156 0 4562 102 14 0 chr1 100624823 100625468 -142038885 + L1PA11 LINE L1 5487 6140 -34 339 298 46 15 chr1 100625978 100626109 -142038244 + MLT1B LTR MaLR 187 321 -69 8590 229 100 26 chr1 100626122 100628266 -142036087 + L1PA13 LINE L1 1 1983 -4814 1751 178 7 14 chr1 100628266 100628558 -142035795 - AluJb SINE Alu -22 290 1 8590 229 100 26 chr1 100628558 100630494 -142033859 + L1PA13 LINE L1 1983 4441 -2356 195 42 0 0 chr1 100630496 100630520 -142033833 + (GA)n Simple_repeat Simple_repeat 1 24 0 1164 242 61 33 chr1 100630521 100631011 -142033342 + MER39 LTR ERV1 4 707 0 2462 65 0 13 chr1 100631196 100631502 -142032851 + AluY SINE Alu 3 304 -7 23 0 0 0 chr1 100631811 100631834 -142032519 + AT_rich Low_complexity Low_complexity 1 23 0 470 252 49 0 chr1 100632020 100632143 -142032210 - MIR SINE MIR -47 215 87 437 266 35 41 chr1 100632209 100632378 -142031975 - HAL1 LINE L1 -6 2501 2334 373 295 154 0 chr1 100632740 100632896 -142031457 - L2 LINE L2 -33 3280 3101 189 107 0 0 chr1 100632949 100632977 -142031376 + (TTTCC)n Simple_repeat Simple_repeat 3 30 0 1581 180 26 29 chr1 100632985 100633296 -142031057 - AluJo SINE Alu -2 310 1 728 320 47 2 chr1 100633447 100633768 -142030585 - L2 LINE L2 -263 3050 2715 2227 163 27 69 chr1 100633908 100634386 -142029967 + MER39 LTR ERV1 250 707 0 21 0 0 0 chr1 100634924 100634945 -142029408 + AT_rich Low_complexity Low_complexity 1 21 0 1462 185 57 14 chr1 100635093 100635374 -142028979 + AluJo SINE Alu 5 297 -15 533 243 8 15 chr1 100636037 100636181 -142028172 + L1ME3 LINE L1 5575 5714 -456 834 201 56 64 chr1 100636230 100636464 -142027889 + L1ME3 LINE L1 5931 6162 0 852 282 97 21 chr1 100636498 100636878 -142027475 + L1MC/D LINE L1 5412 5820 -1988 1520 195 14 27 chr1 100636886 100637178 -142027175 + AluJo SINE Alu 1 288 -24 1939 143 10 3 chr1 100637254 100637548 -142026805 + AluSx SINE Alu 1 296 -16 1980 243 80 12 chr1 100637548 100637717 -142026636 + MLT1F1 LTR MaLR 19 175 -392 222 105 0 0 chr1 100637717 100637755 -142026598 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 1980 243 80 12 chr1 100637755 100638099 -142026254 + MLT1F1 LTR MaLR 175 567 0 25 75 0 0 chr1 100639469 100639522 -142024831 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr1 100639618 100639639 -142024714 + AT_rich Low_complexity Low_complexity 1 21 0 279 297 116 7 chr1 100640314 100640452 -142023901 + MER20B DNA MER1_type 37 189 -594 189 0 0 0 chr1 100641901 100641922 -142022431 + (A)n Simple_repeat Simple_repeat 1 21 0 277 294 0 37 chr1 100641993 100642102 -142022251 + L1M2a LINE L1 15 119 -7049 255 241 15 113 chr1 100642109 100642312 -142022041 + L1M2a LINE L1 1932 2114 -5054 10633 104 30 27 chr1 100642753 100644470 -142019883 - L1P3 LINE L1 -4734 1727 6 2247 126 3 0 chr1 100644508 100644810 -142019543 + AluSx SINE Alu 9 311 -1 567 200 48 42 chr1 100645316 100645419 -142018934 + MER58B DNA MER1_type 176 282 -2138 1199 238 149 27 chr1 100645419 100645868 -142018485 + MLT1D LTR MaLR 1 504 -1 567 200 48 42 chr1 100645868 100645929 -142018424 + MER58B DNA MER1_type 282 341 0 1107 203 29 7 chr1 100646082 100646358 -142017995 - L1MC3 LINE L1 0 7785 7504 201 246 262 0 chr1 100646406 100646467 -142017886 - L2 LINE L2 -49 3223 3147 2232 125 0 0 chr1 100646595 100646900 -142017453 - AluSx SINE Alu -7 305 1 535 285 20 35 chr1 100646929 100647129 -142017224 - L2 LINE L2 -654 2660 2464 235 336 37 69 chr1 100647130 100647347 -142017006 + L2 LINE L2 2846 3055 -258 2348 85 10 0 chr1 100647668 100647963 -142016390 + AluSq SINE Alu 1 298 -15 710 136 0 0 chr1 100648141 100648251 -142016102 - FLAM_A SINE Alu -1 141 32 1853 118 0 8 chr1 100648251 100648506 -142015847 - AluSx SINE Alu -59 253 1 2280 88 10 0 chr1 100649396 100649691 -142014662 + AluSp SINE Alu 1 298 -15 23 0 0 0 chr1 100649919 100649942 -142014411 + AT_rich Low_complexity Low_complexity 1 23 0 2268 83 0 27 chr1 100649942 100650242 -142014111 - AluSq SINE Alu -19 294 3 59 46 0 0 chr1 100650283 100650370 -142013983 + AT_rich Low_complexity Low_complexity 1 87 0 1911 149 0 17 chr1 100650382 100650671 -142013682 - AluJo SINE Alu -28 284 1 24 0 0 0 chr1 100651431 100651455 -142012898 + AT_rich Low_complexity Low_complexity 1 24 0 518 262 94 53 chr1 100651876 100652141 -142012212 + MIR SINE MIR 2 262 0 22 56 0 0 chr1 100652313 100652349 -142012004 + AT_rich Low_complexity Low_complexity 1 36 0 1487 137 37 124 chr1 100653041 100653420 -142010933 - MER7A DNA MER2_type -1 345 2 1542 246 131 42 chr1 100653478 100655310 -142009043 - L1MEc LINE L1 -4140 2256 222 2306 106 0 0 chr1 100657018 100657319 -142007034 + AluSx SINE Alu 1 301 -11 198 0 0 0 chr1 100657358 100657380 -142006973 + (A)n Simple_repeat Simple_repeat 1 22 0 37397 74 11 14 chr1 100657399 100662838 -142001515 + L1PA6 LINE L1 11 5422 -732 2551 53 0 3 chr1 100662838 100663138 -142001215 + AluY SINE Alu 1 299 -12 37397 74 11 14 chr1 100663138 100663853 -142000500 + L1PA6 LINE L1 5422 6138 -16 3762 7 0 0 chr1 100664132 100664574 -141999779 + L1HS LINE L1 5713 6154 -1 21 0 0 0 chr1 100664905 100664926 -141999427 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 100666503 100666525 -141997828 + AT_rich Low_complexity Low_complexity 1 22 0 1106 89 101 0 chr1 100666672 100666830 -141997523 - AluSg/x SINE Alu 0 312 139 21 57 0 0 chr1 100666883 100666918 -141997435 + AT_rich Low_complexity Low_complexity 1 35 0 639 263 129 18 chr1 100667243 100667460 -141996893 - MIR SINE MIR -2 260 20 387 0 0 0 chr1 100668486 100668529 -141995824 + (CA)n Simple_repeat Simple_repeat 1 43 0 890 315 27 25 chr1 100668936 100669301 -141995052 + L2 LINE L2 1991 2356 -958 264 238 0 0 chr1 100670908 100671013 -141993340 + C-rich Low_complexity Low_complexity 1 105 0 198 0 0 0 chr1 100672395 100672417 -141991936 + (A)n Simple_repeat Simple_repeat 1 22 0 452 225 0 36 chr1 100672485 100672596 -141991757 + L1MA9 LINE L1 411 517 -7049 9904 207 28 23 chr1 100672603 100674989 -141989364 + L1MA9 LINE L1 2096 4444 -3121 1809 85 5 0 chr1 100674989 100675213 -141989140 - AluSp SINE Alu -14 299 75 9904 207 28 23 chr1 100675213 100676846 -141987507 + L1MA9 LINE L1 4444 6068 -1497 830 79 0 3 chr1 100676847 100677038 -141987315 + AluY SINE Alu 36 291 -20 1790 197 32 2 chr1 100677045 100677477 -141986876 + L1MA9 LINE L1 6059 6503 -1062 21864 158 28 18 chr1 100677500 100682948 -141981405 + L1PA11 LINE L1 670 6172 -2 3096 190 69 63 chr1 100682939 100683332 -141981021 + L1MA9 LINE L1 6771 7160 -571 * 360 64 0 0 chr1 100683332 100683379 -141980974 + (TA)n Simple_repeat Simple_repeat 1 47 0 2375 67 0 10 chr1 100683379 100683676 -141980677 - AluY SINE Alu -15 296 3 3096 190 69 63 chr1 100683676 100683701 -141980652 + L1MA9 LINE L1 7160 7183 -548 234 91 0 0 chr1 100683701 100683734 -141980619 + (CA)n Simple_repeat Simple_repeat 2 34 0 3096 190 69 63 chr1 100683734 100684244 -141980109 + L1MA9 LINE L1 7183 7706 -25 396 322 72 43 chr1 100684496 100684704 -141979649 - MIR SINE MIR -16 246 33 235 359 0 0 chr1 100684714 100684806 -141979547 + A-rich Low_complexity Low_complexity 4 95 0 497 248 59 7 chr1 100685055 100685208 -141979145 + MARNA DNA Mariner 133 293 -293 40931 46 7 0 chr1 100685383 100691493 -141972860 + L1PA4 LINE L1 3 6155 0 1661 335 91 31 chr1 100692169 100692217 -141972136 - L2 LINE L2 -16 3297 3253 2090 179 86 8 chr1 100692217 100692614 -141971739 + MSTA LTR MaLR 1 428 0 1661 335 91 31 chr1 100692614 100693832 -141970521 - L2 LINE L2 -60 3253 1941 260 250 0 29 chr1 100693968 100694036 -141970317 - MIR SINE MIR -106 156 91 22 35 0 0 chr1 100694703 100694732 -141969621 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 100695402 100695423 -141968930 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 100695486 100695510 -141968843 + AT_rich Low_complexity Low_complexity 1 24 0 453 258 266 3 chr1 100695530 100695887 -141968466 + L1ME4a LINE L1 5483 5933 -188 295 299 186 12 chr1 100696011 100696178 -141968175 - L2 LINE L2 -1313 2001 1806 23 68 0 0 chr1 100696965 100697009 -141967344 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr1 100697361 100697401 -141966952 + AT_rich Low_complexity Low_complexity 1 40 0 331 286 7 78 chr1 100697590 100697744 -141966609 - L1M4 LINE L1 -812 5334 5192 449 265 22 74 chr1 100698065 100698114 -141966239 + HAL1 LINE L1 2289 2339 -168 1270 108 74 78 chr1 100698114 100698345 -141966008 + MER30 DNA MER1_type 1 230 0 449 265 22 74 chr1 100698345 100698525 -141965828 + HAL1 LINE L1 2339 2506 -1 1673 159 0 0 chr1 100699217 100699468 -141964885 + AluSx SINE Alu 1 251 -61 229 340 67 33 chr1 100699499 100699649 -141964704 - L2 LINE L2 0 3313 3159 971 234 89 89 chr1 100700627 100701237 -141963116 + L2 LINE L2 2690 3296 -17 794 150 0 13 chr1 100702565 100702718 -141961635 + L1MA9 LINE L1 6157 6307 -5 32 0 0 0 chr1 100702721 100702753 -141961600 + AT_rich Low_complexity Low_complexity 1 32 0 352 289 12 0 chr1 100703394 100703477 -141960876 - MER5C DNA MER1_type -239 85 2 2177 115 3 3 chr1 100703493 100703788 -141960565 - AluSg SINE Alu -15 295 1 24 32 0 0 chr1 100703998 100704029 -141960324 + AT_rich Low_complexity Low_complexity 1 31 0 1888 215 22 88 chr1 100704787 100705364 -141958989 + MLT1F LTR MaLR 1 539 -3 349 233 0 14 chr1 100705901 100705974 -141958379 + MER21B LTR ERV1 230 301 -562 2992 12 0 0 chr1 100706336 100706675 -141957678 + L1HS LINE L1 5817 6155 0 22 35 0 0 chr1 100706675 100706704 -141957649 + AT_rich Low_complexity Low_complexity 1 29 0 1627 248 57 23 chr1 100706723 100707159 -141957194 + MER21B LTR ERV1 289 739 -124 3180 156 18 47 chr1 100707195 100707798 -141956555 + L1MB7 LINE L1 4838 5393 -791 1098 217 58 69 chr1 100707798 100707878 -141956475 + MLT1A2 LTR MaLR 1 80 -294 1998 83 0 83 chr1 100707878 100708179 -141956174 - AluSg SINE Alu -8 302 27 1098 217 58 69 chr1 100708179 100708476 -141955877 + MLT1A2 LTR MaLR 80 374 0 3180 156 18 47 chr1 100708476 100708903 -141955450 + L1MB7 LINE L1 5393 5831 -353 1984 142 20 3 chr1 100708903 100709206 -141955147 + AluSc SINE Alu 1 308 -1 189 147 0 0 chr1 100709206 100709240 -141955113 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 1118 172 12 142 chr1 100709240 100709303 -141955050 + L1MB7 LINE L1 5817 5887 -297 11336 48 2 3 chr1 100709303 100711505 -141952848 + L1PA6 LINE L1 3943 6154 0 1118 172 12 142 chr1 100711505 100711779 -141952574 + L1MB7 LINE L1 5887 6110 -74 472 47 0 0 chr1 100711823 100711887 -141952466 + L1MB7 LINE L1 6114 6177 -7 688 326 124 21 chr1 100711905 100712522 -141951831 + L2 LINE L2 1233 2741 -573 353 240 0 13 chr1 100712535 100712610 -141951743 - MER5A DNA MER1_type -1 188 115 22 35 0 0 chr1 100712808 100712837 -141951516 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 100713837 100713867 -141950486 + AT_rich Low_complexity Low_complexity 1 30 0 266 259 59 0 chr1 100713894 100713979 -141950374 - L1ME2 LINE L1 -220 5944 5855 448 133 53 0 chr1 100714249 100714324 -141950029 - 7SLRNA srpRNA srpRNA -6 314 236 455 140 0 32 chr1 100714425 100714518 -141949835 - L1MA4 LINE L1 -6 6294 6205 1670 108 75 8 chr1 100714597 100714837 -141949516 - AluSg SINE Alu -15 295 40 415 161 0 32 chr1 100714884 100714977 -141949376 - L1MA4 LINE L1 -11 6292 6204 1928 137 76 13 chr1 100715572 100715887 -141948466 + MER1B DNA MER1_type 3 337 0 183 310 46 23 chr1 100716224 100716311 -141948042 + L2 LINE L2 3175 3263 -50 2090 207 18 11 chr1 100716415 100716920 -141947433 - MER68 LTR ERV1 0 562 1 2032 144 0 3 chr1 100717435 100717733 -141946620 - AluSx SINE Alu -10 302 6 330 206 63 0 chr1 100717835 100717898 -141946455 - L2 LINE L2 0 3313 3247 304 268 103 0 chr1 100718632 100718729 -141945624 - MER94 DNA DNA -21 113 7 2147 112 7 7 chr1 100719226 100719529 -141944824 - AluSx SINE Alu -9 303 1 22 56 0 0 chr1 100719877 100719913 -141944440 + AT_rich Low_complexity Low_complexity 1 36 0 339 303 14 83 chr1 100720085 100720230 -141944123 + L2 LINE L2 2955 3089 -183 382 186 200 14 chr1 100720323 100720468 -141943885 + L1MC5 LINE L1 7760 7931 -30 527 255 138 25 chr1 100721827 100722023 -141942330 + L2 LINE L2 3096 3313 0 358 330 133 6 chr1 100724310 100724483 -141939870 + MIR SINE MIR 62 256 -6 1470 216 56 6 chr1 100724731 100725050 -141939303 + MLT1A1 LTR MaLR 31 365 0 207 100 0 0 chr1 100725154 100725184 -141939169 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 976 246 112 4 chr1 100725465 100725741 -141938612 + L1M4b LINE L1 11 316 -6543 752 199 32 0 chr1 100725762 100725918 -141938435 - L1MB4 LINE L1 -2 6178 6018 1477 77 0 0 chr1 100725918 100726113 -141938240 + L1PA6 LINE L1 5958 6152 -2 2613 115 7 38 chr1 100726113 100726557 -141937796 - L1MB4 LINE L1 -146 6034 5605 1314 187 0 0 chr1 100726680 100726905 -141937448 + AluJo SINE Alu 86 310 -2 207 77 51 26 chr1 100727223 100727262 -141937091 + CT-rich Low_complexity Low_complexity 3 42 0 1304 167 13 105 chr1 100727263 100727754 -141936599 - AluJo SINE Alu 0 495 33 183 42 0 0 chr1 100728776 100728800 -141935553 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 372 93 56 0 chr1 100731394 100731448 -141932905 + U2 snRNA snRNA 1 57 -131 357 295 75 115 chr1 100731916 100732238 -141932115 + L3 LINE CR1 1055 1363 -214 2552 220 60 57 chr1 100732285 100733070 -141931283 - L1ME1 LINE L1 -5 6230 5444 1452 226 60 36 chr1 100733088 100733609 -141930744 - L1ME1 LINE L1 -836 5379 4847 1085 260 63 43 chr1 100733581 100733891 -141930462 - L1ME1 LINE L1 -3979 2417 2115 * 2069 92 64 7 chr1 100733891 100734174 -141930179 - AluSg1 SINE Alu -10 299 1 1085 260 63 43 chr1 100734174 100734497 -141929856 - L1ME1 LINE L1 -4281 2115 1771 324 277 0 34 chr1 100734516 100734635 -141929718 - L1ME1 LINE L1 -7 6157 6043 295 181 48 72 chr1 100735340 100735423 -141928930 + MLT1J2 LTR MaLR 77 157 -252 1905 149 32 35 chr1 100735620 100735996 -141928357 + THE1C LTR MaLR 1 375 0 751 274 138 24 chr1 100737053 100737422 -141926931 + MLT1J2 LTR MaLR 1 411 -39 366 201 8 75 chr1 100737732 100737866 -141926487 - L1ME3A LINE L1 -3 6159 6035 1857 221 91 20 chr1 100737878 100738315 -141926038 - L1ME3A LINE L1 -213 5957 5478 1863 129 43 0 chr1 100738315 100738593 -141925760 - AluSx SINE Alu -18 294 5 1857 221 91 20 chr1 100738593 100738662 -141925691 - L1ME3A LINE L1 -692 5478 5415 2182 102 17 3 chr1 100738670 100738965 -141925388 - AluSx SINE Alu -13 299 1 1311 246 178 4 chr1 100739078 100739634 -141924719 - L1ME3A LINE L1 -955 5191 4539 327 299 102 6 chr1 100739634 100739791 -141924562 + L2 LINE L2 3133 3304 -9 348 325 9 128 chr1 100739830 100740165 -141924188 + L2 LINE L2 2970 3264 -8 194 199 7 199 chr1 100740351 100740487 -141923866 - MER5A DNA MER1_type -68 121 12 318 206 186 29 chr1 100740836 100740938 -141923415 + MIR SINE MIR 74 191 -71 29934 106 11 56 chr1 100741115 100747636 -141916717 - L1PA8 LINE L1 -6 6166 12 2254 123 3 0 chr1 100747678 100747980 -141916373 + AluSx SINE Alu 9 311 -1 666 188 48 42 chr1 100748486 100748589 -141915764 + MER58B DNA MER1_type 176 282 -2138 1388 238 149 27 chr1 100748589 100749038 -141915315 + MLT1D LTR MaLR 1 504 -1 666 188 48 42 chr1 100749038 100749099 -141915254 + MER58B DNA MER1_type 282 341 0 1242 207 29 4 chr1 100749252 100749527 -141914826 - L1MC3 LINE L1 0 7785 7504 200 246 262 0 chr1 100749575 100749636 -141914717 - L2 LINE L2 -49 3223 3147 2270 118 0 0 chr1 100749764 100750070 -141914283 - AluSx SINE Alu -6 306 1 527 285 20 35 chr1 100750099 100750299 -141914054 - L2 LINE L2 -654 2660 2464 243 316 47 72 chr1 100750324 100750517 -141913836 + L2 LINE L2 2868 3055 -258 2324 88 10 0 chr1 100750838 100751132 -141913221 + AluSq SINE Alu 1 297 -16 761 136 0 0 chr1 100751310 100751420 -141912933 - FLAM_A SINE Alu -1 141 32 1854 118 0 8 chr1 100751420 100751675 -141912678 - AluSx SINE Alu -59 253 1 2285 88 10 0 chr1 100752565 100752860 -141911493 + AluSp SINE Alu 1 298 -15 23 0 0 0 chr1 100753088 100753111 -141911242 + AT_rich Low_complexity Low_complexity 1 23 0 2276 83 0 27 chr1 100753111 100753411 -141910942 - AluSq SINE Alu -19 294 3 59 46 0 0 chr1 100753452 100753539 -141910814 + AT_rich Low_complexity Low_complexity 1 87 0 1893 149 0 17 chr1 100753551 100753840 -141910513 - AluJo SINE Alu -28 284 1 24 0 0 0 chr1 100754600 100754624 -141909729 + AT_rich Low_complexity Low_complexity 1 24 0 514 262 94 53 chr1 100755045 100755310 -141909043 + MIR SINE MIR 2 262 0 22 56 0 0 chr1 100755482 100755518 -141908835 + AT_rich Low_complexity Low_complexity 1 36 0 1645 137 37 124 chr1 100756210 100756589 -141907764 - MER7A DNA MER2_type -1 345 2 1970 243 131 42 chr1 100756647 100758480 -141905873 - L1MEc LINE L1 -4140 2256 221 2303 106 0 0 chr1 100760187 100760488 -141903865 + AluSx SINE Alu 1 301 -11 207 0 0 0 chr1 100760527 100760550 -141903803 + (A)n Simple_repeat Simple_repeat 1 23 0 40280 74 10 13 chr1 100760569 100766004 -141898349 + L1PA6 LINE L1 11 5423 -731 2579 57 0 0 chr1 100766004 100766303 -141898050 + AluY SINE Alu 1 299 -12 40280 74 10 13 chr1 100766303 100767018 -141897335 + L1PA6 LINE L1 5423 6138 -16 4000 11 0 0 chr1 100767295 100767739 -141896614 + L1HS LINE L1 5711 6154 -1 21 0 0 0 chr1 100768070 100768091 -141896262 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 100769669 100769691 -141894662 + AT_rich Low_complexity Low_complexity 1 22 0 1106 89 101 0 chr1 100769837 100769995 -141894358 - AluSg/x SINE Alu 0 312 139 21 57 0 0 chr1 100770048 100770083 -141894270 + AT_rich Low_complexity Low_complexity 1 35 0 630 263 129 18 chr1 100770408 100770625 -141893728 - MIR SINE MIR -2 260 20 369 0 0 0 chr1 100771654 100771695 -141892658 + (CA)n Simple_repeat Simple_repeat 1 41 0 859 315 27 25 chr1 100772102 100772467 -141891886 + L2 LINE L2 1991 2356 -958 262 393 71 31 chr1 100774442 100774796 -141889557 + L2 LINE L2 2454 2821 -493 579 256 21 99 chr1 100774837 100775079 -141889274 + MER102b DNA MER1_type 103 325 -16 262 330 51 46 chr1 100775144 100775341 -141889012 + L2 LINE L2 2887 3084 -188 302 263 39 128 chr1 100775872 100776028 -141888325 + MIR SINE MIR 2 143 -119 223 154 77 19 chr1 100776529 100776581 -141887772 + MIR SINE MIR 175 229 -33 21 82 0 0 chr1 100777355 100777404 -141886949 + AT_rich Low_complexity Low_complexity 1 49 0 842 209 10 68 chr1 100777684 100777890 -141886463 + MLT1A1 LTR MaLR 1 194 -171 310 77 0 53 chr1 100777904 100777970 -141886383 - MLT2A1 LTR ERVL 0 453 389 512 45 94 18 chr1 100777986 100778214 -141886139 + (TA)n Simple_repeat Simple_repeat 1 245 0 2986 91 0 10 chr1 100778216 100778622 -141885731 - MLT2A1 LTR ERVL -40 404 3 45223 62 10 14 chr1 100778624 100782544 -141881809 - HERVL-A1 LTR ERVL 0 5654 1722 2240 119 0 3 chr1 100782544 100782847 -141881506 - AluSx SINE Alu -10 302 1 45223 62 10 14 chr1 100782847 100783977 -141880376 - HERVL-A1 LTR ERVL -3932 1722 590 7658 43 35 0 chr1 100783977 100784844 -141879509 + MER11D LTR ERVK 1 897 0 45223 62 10 14 chr1 100784844 100785294 -141879059 - HERVL-A1 LTR ERVL -5064 590 140 2358 165 55 25 chr1 100785294 100785768 -141878585 + LTR22B LTR ERVK 1 488 -4 45223 62 10 14 chr1 100785768 100785814 -141878539 - HERVL-A1 LTR ERVL -5514 140 95 1886 136 33 0 chr1 100785814 100786109 -141878244 + AluSx SINE Alu 1 304 0 45223 62 10 14 chr1 100786109 100786232 -141878121 - HERVL-A1 LTR ERVL -5559 95 1 3181 94 34 16 chr1 100786232 100786273 -141878080 - MLT2A1 LTR ERVL 0 444 405 1221 105 0 0 chr1 100786273 100786484 -141877869 + (TA)n Simple_repeat Simple_repeat 1 211 0 3181 94 34 16 chr1 100786484 100786875 -141877478 - MLT2A1 LTR ERVL -39 405 1 789 163 11 103 chr1 100786924 100787108 -141877245 + MLT1A1 LTR MaLR 199 365 0 2809 209 20 11 chr1 100787108 100787273 -141877080 + MLT1A1-int LTR MaLR 1 163 -1572 2660 151 16 25 chr1 100787273 100787705 -141876648 + MSTC LTR MaLR 1 428 0 2809 209 20 11 chr1 100787705 100788079 -141876274 + MLT1A1-int LTR MaLR 163 545 -1190 4560 207 18 33 chr1 100788109 100789050 -141875303 + MLT1A1-int LTR MaLR 809 1735 0 1549 174 23 89 chr1 100789050 100789441 -141874912 + MLT1A1 LTR MaLR 1 365 0 320 284 17 26 chr1 100790165 100790281 -141874072 + MER94 DNA DNA 1 115 -19 805 263 38 42 chr1 100791877 100792139 -141872214 - MIR SINE MIR 0 262 2 372 388 77 0 chr1 100792147 100792356 -141871997 + L2 LINE L2 2621 2845 -469 252 0 0 0 chr1 100792437 100792465 -141871888 + (CA)n Simple_repeat Simple_repeat 2 29 0 241 303 211 0 chr1 100792619 100792728 -141871625 + L2 LINE L2 3136 3267 -5 2163 109 0 7 chr1 100792753 100793046 -141871307 + AluSg SINE Alu 1 291 -19 2333 105 0 0 chr1 100793138 100793433 -141870920 - AluSq SINE Alu -18 295 1 1910 136 37 10 chr1 100793433 100793728 -141870625 - AluJb SINE Alu -9 303 1 186 315 41 14 chr1 100793747 100793820 -141870533 - MIR SINE MIR -77 185 111 201 244 0 0 chr1 100794724 100794765 -141869588 - MIR3 SINE MIR -17 191 151 534 222 20 52 chr1 100795035 100795091 -141869262 - MIR SINE MIR -48 214 158 1960 172 110 62 chr1 100795091 100795563 -141868790 + MLT1D LTR MaLR 1 498 -7 1990 124 43 0 chr1 100795563 100795862 -141868491 + AluSx SINE Alu 1 312 0 534 222 20 52 chr1 100795871 100795967 -141868386 - MIR SINE MIR -104 158 67 245 333 7 54 chr1 100796737 100796884 -141867469 - MIR3 SINE MIR -48 160 21 2134 124 3 0 chr1 100796971 100797280 -141867073 + AluSx SINE Alu 1 310 0 28 29 0 0 chr1 100797542 100797577 -141866776 + AT_rich Low_complexity Low_complexity 1 35 0 1112 99 0 6 chr1 100797900 100798082 -141866271 + L1 LINE L1 4619 4799 -1347 1437 191 4 8 chr1 100798082 100798338 -141866015 - AluJb SINE Alu -53 259 5 23 33 0 0 chr1 100798478 100798508 -141865845 + AT_rich Low_complexity Low_complexity 1 30 0 234 317 16 0 chr1 100799024 100799097 -141865256 + MIR SINE MIR 53 127 -81 2113 98 0 7 chr1 100799190 100799467 -141864886 + AluSx SINE Alu 1 275 -37 266 0 0 29 chr1 100799467 100799502 -141864851 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1349 222 66 50 chr1 100799797 100800252 -141864101 + MLT1C LTR MaLR 6 467 0 343 310 208 35 chr1 100800254 100800451 -141863902 - MIR SINE MIR -6 256 26 186 222 0 79 chr1 100800429 100800492 -141863861 + L3 LINE CR1 918 975 -602 * 2237 118 0 0 chr1 100800498 100800795 -141863558 - AluSx SINE Alu -15 297 1 1635 229 59 3 chr1 100800939 100801310 -141863043 - MSTD LTR MaLR -4 392 1 7246 106 4 22 chr1 100801362 100802453 -141861900 - MER11C LTR ERVK 0 1071 1 286 242 116 42 chr1 100802540 100802635 -141861718 - L2 LINE L2 -4 3309 3208 531 248 93 0 chr1 100803096 100803225 -141861128 + LTR40a LTR ERVL 4 144 -375 264 51 0 0 chr1 100803218 100803257 -141861096 + LTR5 LTR ERVK 767 805 -164 * 1176 279 25 30 chr1 100803270 100803326 -141861027 + LTR40a LTR ERVL 120 175 -344 1329 161 90 59 chr1 100803326 100803680 -141860673 - MLT1A1 LTR MaLR 0 365 1 1176 279 25 30 chr1 100803680 100804025 -141860328 + LTR40a LTR ERVL 175 519 0 2501 135 22 0 chr1 100804705 100805113 -141859240 - MSTA LTR MaLR -11 417 1 21 0 0 0 chr1 100805675 100805696 -141858657 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr1 100805857 100805884 -141858469 + (TA)n Simple_repeat Simple_repeat 1 27 0 1743 141 90 0 chr1 100805884 100806161 -141858192 - AluSx SINE Alu -10 302 1 1678 157 26 16 chr1 100807011 100807324 -141857029 - MER58B DNA MER1_type -5 336 21 2092 124 0 0 chr1 100807451 100807757 -141856596 + AluSx SINE Alu 1 306 0 2446 161 51 43 chr1 100808997 100809037 -141855316 + L1MB3 LINE L1 4917 4955 -1228 2321 94 3 0 chr1 100809037 100809344 -141855009 + AluSq SINE Alu 1 308 -5 2446 161 51 43 chr1 100809344 100810185 -141854168 + L1MB3 LINE L1 4955 5783 -400 2076 138 9 0 chr1 100810185 100810519 -141853834 + MER2 DNA MER2_type 1 337 -8 2246 129 23 10 chr1 100810536 100810931 -141853422 + L1MB3 LINE L1 5781 6180 -3 304 281 158 37 chr1 100810987 100811048 -141853305 + MIR SINE MIR 47 99 -163 1773 163 7 14 chr1 100811048 100811343 -141853010 - AluJb SINE Alu -19 293 1 304 281 158 37 chr1 100811343 100811445 -141852908 + MIR SINE MIR 99 230 -32 186 43 0 0 chr1 100812629 100812652 -141851701 + (TC)n Simple_repeat Simple_repeat 2 24 0 1467 162 0 0 chr1 100812657 100812898 -141851455 - L1PB4 LINE L1 -6 6150 5910 302 383 115 3 chr1 100812929 100813326 -141851027 + L2 LINE L2 2634 3082 -190 282 333 10 0 chr1 100813322 100813421 -141850932 + MIR SINE MIR 162 261 -1 * 1823 154 0 72 chr1 100814200 100814531 -141849822 - AluJb SINE Alu -5 307 1 225 0 0 0 chr1 100814675 100814700 -141849653 + (T)n Simple_repeat Simple_repeat 1 25 0 399 41 0 0 chr1 100815241 100815290 -141849063 + (CA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr1 100815399 100815420 -141848933 + AT_rich Low_complexity Low_complexity 1 21 0 776 220 50 0 chr1 100815489 100815630 -141848723 + AluJb SINE Alu 135 282 -30 227 111 0 22 chr1 100815633 100815678 -141848675 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 244 273 15 15 chr1 100815696 100815762 -141848591 - L2 LINE L2 -3 3269 3204 360 176 103 109 chr1 100815814 100815979 -141848374 - MIR SINE MIR -24 238 75 1523 282 186 42 chr1 100816120 100816545 -141847808 + L2 LINE L2 1843 2206 -1107 3623 162 13 2 chr1 100816545 100817151 -141847202 - MER90 LTR ERV1 0 614 2 1523 282 186 42 chr1 100817151 100817973 -141846380 + L2 LINE L2 2206 3295 -18 279 198 0 142 chr1 100819889 100819995 -141844358 + L2 LINE L2 3223 3313 0 334 238 71 0 chr1 100821057 100821141 -141843212 + L2 LINE L2 3222 3311 -2 435 275 113 87 chr1 100821268 100821613 -141842740 - L1ME4a LINE L1 -72 6049 5696 1759 155 10 26 chr1 100821667 100821970 -141842383 - AluJo SINE Alu -14 298 1 352 231 22 11 chr1 100822180 100822271 -141842082 - MER94 DNA DNA -20 114 23 1041 211 151 107 chr1 100822394 100823043 -141841310 - L2 LINE L2 -1 3312 2618 1288 178 47 22 chr1 100823558 100823861 -141840492 - AluJo SINE Alu 0 310 1 2156 131 0 0 chr1 100824229 100824526 -141839827 + AluSx SINE Alu 1 297 -15 348 255 27 60 chr1 100824553 100824702 -141839651 + MIR SINE MIR 81 224 -38 1258 290 200 39 chr1 100826341 100827509 -141836844 + L2 LINE L2 1638 3094 -219 1730 164 45 14 chr1 100827509 100827796 -141836557 + AluJo SINE Alu 3 298 -14 1258 290 200 39 chr1 100827796 100828059 -141836294 + L2 LINE L2 3094 3313 0 191 293 50 20 chr1 100828637 100828736 -141835617 + L2 LINE L2 2381 2482 -832 432 233 22 0 chr1 100828745 100828835 -141835518 + MIR SINE MIR 2 93 -169 188 379 30 0 chr1 100828900 100828966 -141835387 + L2 LINE L2 2569 2636 -678 512 239 117 32 chr1 100829542 100829789 -141834564 - L1MA9 LINE L1 -38 6274 6007 318 298 44 9 chr1 100829977 100830091 -141834262 + MIR3 SINE MIR 87 204 -4 2242 107 7 0 chr1 100834344 100834634 -141829719 + AluSx SINE Alu 1 292 -20 602 293 143 62 chr1 100834636 100835377 -141828976 - L2 LINE L2 -427 2887 2070 2214 100 13 7 chr1 100835377 100835678 -141828675 + AluSg SINE Alu 1 303 -7 602 293 143 62 chr1 100835678 100835771 -141828582 - L2 LINE L2 -1244 2070 1986 5165 89 18 14 chr1 100835844 100836369 -141827984 + L1MA2 LINE L1 5539 6060 -244 1697 176 0 4 chr1 100836369 100836641 -141827712 + AluJb SINE Alu 31 301 -11 5165 89 18 14 chr1 100836641 100836722 -141827631 + L1MA2 LINE L1 6060 6139 -165 1588 156 7 69 chr1 100836722 100837011 -141827342 + AluSx SINE Alu 33 303 -9 5165 89 18 14 chr1 100837011 100837165 -141827188 + L1MA2 LINE L1 6139 6303 -1 21 36 0 0 chr1 100837179 100837207 -141827146 + AT_rich Low_complexity Low_complexity 1 28 0 645 274 42 6 chr1 100837464 100837632 -141826721 + MER5B DNA MER1_type 5 178 0 22 56 0 0 chr1 100837641 100837677 -141826676 + AT_rich Low_complexity Low_complexity 1 36 0 199 241 120 131 chr1 100838715 100838906 -141825447 + MER5A DNA MER1_type 1 189 0 2155 137 0 0 chr1 100839446 100839745 -141824608 + AluSc SINE Alu 1 299 -10 377 222 362 18 chr1 100840678 100840899 -141823454 - L2 LINE L2 0 3313 3017 505 337 92 28 chr1 100840930 100841256 -141823097 - L2 LINE L2 -9 3263 2917 279 0 0 0 chr1 100841456 100841487 -141822866 + (TG)n Simple_repeat Simple_repeat 2 32 0 208 307 27 0 chr1 100846576 100846651 -141817702 - L3b LINE CR1 -254 1329 1253 358 270 20 61 chr1 100847823 100848019 -141816334 + L2 LINE L2 2916 3103 -169 331 306 117 0 chr1 100848259 100848370 -141815983 + L2 LINE L2 3147 3270 -2 2211 115 3 7 chr1 100848566 100848871 -141815482 - AluSx SINE Alu -8 304 1 1163 117 7 0 chr1 100849177 100849366 -141814987 - AluSp SINE Alu 0 317 128 204 167 48 0 chr1 100850459 100850501 -141813852 + MIR SINE MIR 95 138 -124 180 0 0 0 chr1 100850798 100850818 -141813535 + (CA)n Simple_repeat Simple_repeat 1 20 0 796 184 0 0 chr1 100853466 100853591 -141810762 - FLAM_A SINE Alu -8 125 1 383 213 27 0 chr1 100853654 100853729 -141810624 - AluJb SINE Alu -106 196 120 2330 87 10 3 chr1 100853740 100854049 -141810304 + AluSq SINE Alu 1 311 -2 347 235 0 12 chr1 100854138 100854219 -141810134 + MER116 DNA Mariner 1 80 0 181 322 116 8 chr1 100856338 100856459 -141807894 + MIR3 SINE MIR 6 139 -69 3188 161 16 16 chr1 100856652 100857210 -141807143 - MER74A LTR ERVL 0 558 1 225 314 39 39 chr1 100857287 100857389 -141806964 - L2 LINE L2 -527 2787 2686 292 296 20 0 chr1 100857445 100857543 -141806810 - L2 LINE L2 -815 2499 2400 314 285 7 44 chr1 100858621 100858758 -141805595 + L2 LINE L2 3182 3313 0 299 286 127 0 chr1 100858753 100858879 -141805474 - MIR SINE MIR -62 200 59 * 1936 144 26 7 chr1 100860293 100860598 -141803755 - AluJo SINE Alu -1 311 1 525 223 95 20 chr1 100860622 100860770 -141803583 - MIR SINE MIR -84 178 20 261 57 0 0 chr1 100860828 100860863 -141803490 + (CA)n Simple_repeat Simple_repeat 1 35 0 356 225 22 80 chr1 100860905 100861043 -141803310 - L1MB7 LINE L1 -3 6175 6046 * 5149 190 114 7 chr1 100861039 100862735 -141801618 - L1ME1 LINE L1 -216 5950 4076 250 356 37 5 chr1 100863202 100863390 -141800963 + L2 LINE L2 2871 3064 -208 207 125 0 0 chr1 100864929 100864969 -141799384 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 393 22 0 0 chr1 100865419 100865465 -141798888 + (TG)n Simple_repeat Simple_repeat 2 47 0 494 250 162 0 chr1 100865543 100865691 -141798662 + MER5A DNA MER1_type 18 189 0 241 273 131 30 chr1 100866277 100866376 -141797977 - L2 LINE L2 -9 3263 3155 377 298 120 31 chr1 100866390 100866615 -141797738 - MIR SINE MIR -8 254 10 304 256 51 0 chr1 100866625 100866703 -141797650 + L2 LINE L2 3190 3271 -1 1122 140 11 0 chr1 100867694 100867873 -141796480 + L1PA2 LINE L1 5975 6155 0 2959 106 12 7 chr1 100867994 100868420 -141795933 + MSTA LTR MaLR 1 428 0 428 257 21 21 chr1 100868428 100868572 -141795781 + MIR SINE MIR 118 261 -1 466 283 113 39 chr1 100869330 100869613 -141794740 - L2 LINE L2 0 3313 3010 648 265 140 36 chr1 100870165 100870443 -141793910 - MLT1J2 LTR MaLR -122 328 22 193 231 77 0 chr1 100870529 100870581 -141793772 + L2 LINE L2 3216 3271 -1 307 309 0 11 chr1 100871401 100871495 -141792858 + L2 LINE L2 3168 3260 -12 1400 170 37 81 chr1 100872090 100872472 -141791881 - MLT1A1 LTR MaLR 0 365 1 333 341 91 22 chr1 100874233 100874594 -141789759 - L2 LINE L2 -25 3247 2862 378 226 12 0 chr1 100874958 100875042 -141789311 + MIR SINE MIR 27 111 -151 861 162 15 171 chr1 100875194 100875521 -141788832 - MER33 DNA MER1_type 0 324 49 374 212 62 18 chr1 100875603 100875716 -141788637 + MIR SINE MIR 75 192 -70 219 273 78 0 chr1 100875751 100875828 -141788525 + L2 LINE L2 2926 3008 -264 667 193 15 0 chr1 100875850 100875985 -141788368 - L1MB7 LINE L1 -7 6177 6041 1962 107 6 22 chr1 100876043 100876361 -141787992 - L1MA5 LINE L1 0 6300 5988 203 347 0 57 chr1 100876361 100876485 -141787868 + L2 LINE L2 2996 3112 -160 274 175 127 43 chr1 100876555 100876649 -141787704 + HsTC2 DNA Tc2 1 1835 -63 2005 155 3 3 chr1 100878206 100878515 -141785838 + AluJb SINE Alu 1 309 -3 2483 39 0 7 chr1 100878515 100878868 -141785485 + AluY SINE Alu 1 351 0 1157 229 98 19 chr1 100879697 100880063 -141784290 + L1MC4 LINE L1 7513 7907 -135 265 311 197 12 chr1 100880114 100880358 -141783995 + L1MC5 LINE L1 5613 5901 -1907 183 80 0 0 chr1 100880359 100880384 -141783969 + (TA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr1 100880435 100880456 -141783897 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 100880575 100880596 -141783757 + AT_rich Low_complexity Low_complexity 1 21 0 4716 197 26 72 chr1 100880815 100882378 -141781975 + L1MC5 LINE L1 6429 7917 -44 259 345 91 12 chr1 100883224 100883389 -141780964 - L2 LINE L2 -3 3269 3092 2093 123 3 10 chr1 100883491 100883791 -141780562 + AluSx SINE Alu 1 298 -14 952 210 65 0 chr1 100884281 100884481 -141779872 - MER20 DNA MER1_type -5 214 2 654 316 15 27 chr1 100884514 100884777 -141779576 - MIR SINE MIR -2 260 1 1875 126 4 0 chr1 100884982 100885237 -141779116 - AluSx SINE Alu -56 256 1 350 294 43 37 chr1 100885647 100885810 -141778543 + MIR SINE MIR 49 212 -50 1970 148 0 3 chr1 100886011 100886302 -141778051 + AluJb SINE Alu 1 290 -22 1993 102 4 0 chr1 100886304 100886559 -141777794 + AluSg SINE Alu 42 297 -13 552 171 0 41 chr1 100886911 100887034 -141777319 - MIR SINE MIR -110 152 35 246 32 0 0 chr1 100887140 100887156 -141777197 + (TG)n Simple_repeat Simple_repeat 1 47 0 246 32 0 0 chr1 100887156 100887187 -141777166 + (TG)n Simple_repeat Simple_repeat 1 31 0 340 191 21 11 chr1 100887338 100887432 -141776921 + GA-rich Low_complexity Low_complexity 4 98 0 745 176 8 0 chr1 100888355 100888480 -141775873 + FLAM_A SINE Alu 8 133 -9 612 266 41 0 chr1 100888702 100888871 -141775482 - MER69A DNA AcHobo -1 176 1 279 316 166 16 chr1 100890196 100890389 -141773964 - MIR SINE MIR -15 247 26 2434 71 86 0 chr1 100890456 100890792 -141773561 - L1PA13 LINE L1 -4 6159 5795 581 320 26 23 chr1 100891074 100891296 -141773057 + L2 LINE L2 2239 2464 -850 1296 163 87 109 chr1 100891296 100891756 -141772597 - LTR7 LTR ERV1 0 450 1 581 320 26 23 chr1 100891756 100891839 -141772514 + L2 LINE L2 2464 2545 -769 24 32 0 0 chr1 100892465 100892496 -141771857 + AT_rich Low_complexity Low_complexity 1 31 0 432 0 0 0 chr1 100892582 100892630 -141771723 + (TG)n Simple_repeat Simple_repeat 2 49 0 956 151 0 0 chr1 100893270 100893409 -141770944 - FRAM SINE Alu -12 164 26 291 237 186 17 chr1 100894232 100894350 -141770003 + MIR SINE MIR 96 233 -29 1217 269 58 22 chr1 100894481 100895079 -141769274 + L2 LINE L2 2680 3308 -5 366 288 106 8 chr1 100895120 100895252 -141769101 - MER5A DNA MER1_type -10 179 35 592 274 91 18 chr1 100896789 100897008 -141767345 - MIR SINE MIR -13 249 15 243 274 163 47 chr1 100897043 100897233 -141767120 + MIR SINE MIR 1 212 -50 4583 180 35 5 chr1 100897816 100898934 -141765419 + L1MB1 LINE L1 5009 6165 -3 806 265 173 28 chr1 100899766 100900264 -141764089 - MLT1L LTR MaLR -4 611 42 396 232 116 0 chr1 100901450 100901562 -141762791 - MIR3 SINE MIR -6 202 78 207 284 179 0 chr1 100901701 100901796 -141762557 + MIR SINE MIR 137 248 -14 207 234 207 45 chr1 100901839 100901950 -141762403 + MIR3 SINE MIR 3 131 -77 390 245 168 7 chr1 100902012 100902167 -141762186 - MER5A DNA MER1_type 0 189 10 230 196 0 36 chr1 100903257 100903313 -141761040 + GA-rich Low_complexity Low_complexity 3 56 0 2527 66 3 0 chr1 100904277 100904578 -141759775 - AluSp SINE Alu -11 302 1 1395 248 184 19 chr1 100904657 100905226 -141759127 + MLT2F LTR ERVL 1 663 0 2383 97 0 3 chr1 100905702 100906013 -141758340 - AluSq SINE Alu -3 310 1 253 260 219 0 chr1 100906153 100906249 -141758104 - MER5B DNA MER1_type 0 178 62 774 254 102 26 chr1 100906440 100906822 -141757531 + L1ME4a LINE L1 5484 5894 -227 2104 106 18 0 chr1 100907526 100907810 -141756543 - AluSc SINE Alu -16 293 5 203 294 59 29 chr1 100909342 100909444 -141754909 + MIR SINE MIR 22 126 -136 2138 93 10 0 chr1 100909667 100909958 -141754395 - AluY SINE Alu -17 294 1 1747 133 8 12 chr1 100911022 100911278 -141753075 - AluSx SINE Alu -30 282 28 346 176 0 0 chr1 100911378 100911429 -141752924 - AluSx SINE Alu -251 51 1 557 225 26 46 chr1 100911471 100911622 -141752731 - MIR SINE MIR -108 154 7 203 225 0 0 chr1 100911633 100911673 -141752680 - MIR SINE MIR -22 240 201 1172 157 185 17 chr1 100911679 100911966 -141752387 - MER47A DNA MER2_type -12 354 20 533 268 45 6 chr1 100911974 100912153 -141752200 - MIR SINE MIR -67 195 10 432 243 196 47 chr1 100912855 100913069 -141751284 + MIR SINE MIR 17 262 0 412 236 179 7 chr1 100913672 100913812 -141750541 - MER5A DNA MER1_type 0 189 26 830 147 35 0 chr1 100913897 100914040 -141750313 + L1ME LINE L1 5330 5477 -689 10375 111 27 5 chr1 100914048 100915573 -141748780 - Tigger1 DNA MER2_type 0 2418 860 260 146 104 0 chr1 100915707 100915755 -141748598 + FLAM SINE Alu 73 125 -8 261 264 58 58 chr1 100916320 100916441 -141747912 + L2 LINE L2 2979 3099 -173 666 105 0 0 chr1 100917257 100917362 -141746991 + (CA)n Simple_repeat Simple_repeat 2 106 0 4952 198 39 21 chr1 100917737 100918077 -141746276 - MER45B DNA AcHobo -541 1040 707 2320 102 0 0 chr1 100918077 100918372 -141745981 - AluSg SINE Alu -15 295 1 4952 198 39 21 chr1 100918372 100919053 -141745300 - MER45B DNA AcHobo -874 707 1 579 208 71 56 chr1 100919261 100919458 -141744895 - MIR SINE MIR -15 247 48 583 176 0 69 chr1 100919462 100919621 -141744732 - MER45B DNA AcHobo -66 974 827 943 148 0 0 chr1 100920286 100920428 -141743925 + MLT1A1 LTR MaLR 1 142 -223 943 97 0 22 chr1 100920447 100920581 -141743772 + AluSg/x SINE Alu 170 300 -12 1022 148 32 60 chr1 100920587 100920803 -141743550 + MLT1A1 LTR MaLR 156 365 0 480 77 0 0 chr1 100920857 100920922 -141743431 + (CA)n Simple_repeat Simple_repeat 2 66 0 343 255 160 0 chr1 100921158 100921264 -141743089 + L2 LINE L2 3191 3313 0 24 0 0 0 chr1 100922445 100922469 -141741884 + AT_rich Low_complexity Low_complexity 1 24 0 846 141 0 0 chr1 100922469 100922590 -141741763 - AluJb SINE Alu -191 121 1 6490 133 1 1 chr1 100922608 100923888 -141740465 - L1PB1 LINE L1 0 6151 4872 434 254 17 0 chr1 100923894 100924012 -141740341 - L1ME4a LINE L1 -294 5827 5708 879 238 36 22 chr1 100926175 100926398 -141737955 + MIR SINE MIR 37 262 0 507 355 52 4 chr1 100927821 100928052 -141736301 - MIR SINE MIR 0 262 21 1793 177 10 0 chr1 100928195 100928500 -141735853 + AluJo SINE Alu 1 308 -4 2126 131 0 7 chr1 100928502 100928808 -141735545 + AluSq SINE Alu 1 304 -9 234 234 0 0 chr1 100929235 100929282 -141735071 - MER116 DNA Mariner -26 54 8 1183 152 107 36 chr1 100929775 100930038 -141734315 - AluJo SINE Alu 0 312 50 2329 89 3 0 chr1 100930231 100930524 -141733829 - AluSg SINE Alu -16 294 1 1800 139 9 65 chr1 100930845 100931168 -141733185 - AluJo SINE Alu -7 305 1 2104 148 0 0 chr1 100931173 100931477 -141732876 - AluJb SINE Alu -7 305 2 281 281 39 31 chr1 100931597 100931725 -141732628 - L2 LINE L2 -1010 2304 2176 775 276 78 42 chr1 100931816 100932149 -141732204 + MLT1J2 LTR MaLR 52 396 -54 440 310 111 18 chr1 100933826 100934052 -141730301 - L3 LINE CR1 -72 1505 1259 1955 123 50 17 chr1 100934325 100934625 -141729728 - AluJo SINE Alu -2 310 1 34 65 0 0 chr1 100935600 100935662 -141728691 + AT_rich Low_complexity Low_complexity 1 62 0 1978 91 0 4 chr1 100935830 100936084 -141728269 - AluSx SINE Alu -21 291 39 846 279 32 38 chr1 100936093 100936433 -141727920 + HAL1b LINE L1 326 663 -685 434 299 90 0 chr1 100988337 100988471 -141675882 + L2 LINE L2 3121 3266 -6 284 309 53 0 chr1 100989420 100989572 -141674781 + L1MC/D LINE L1 5303 5462 -2346 318 316 59 51 chr1 100989900 100990137 -141674216 + L1 LINE L1 4973 5211 -935 522 298 77 77 chr1 100990297 100990726 -141673627 + L2 LINE L2 2885 3313 0 1213 144 0 5 chr1 100990959 100991161 -141673192 - Tigger5 DNA MER2_type 0 2323 2123 477 113 0 0 chr1 100991182 100991253 -141673100 - Tigger5 DNA MER2_type -2214 109 39 2138 130 7 0 chr1 100991862 100992163 -141672190 + AluSx SINE Alu 1 303 -9 280 87 0 0 chr1 100992202 100992248 -141672105 - Alu SINE Alu 0 302 257 243 83 0 0 chr1 100992250 100992286 -141672067 - Alu SINE Alu -165 138 103 1137 93 0 0 chr1 100992297 100992436 -141671917 - AluSq/x SINE Alu -174 139 1 245 271 167 14 chr1 100992688 100992909 -141671444 - L1MC4a LINE L1 -1875 5933 5679 316 319 178 18 chr1 100992962 100993294 -141671059 + L1M4 LINE L1 2489 2873 -3273 2352 87 0 3 chr1 100993299 100993609 -141670744 + AluSc SINE Alu 1 309 0 276 180 138 66 chr1 100993658 100993706 -141670647 + L1M4 LINE L1 2872 2915 -3231 1955 124 0 0 chr1 100993706 100993980 -141670373 + AluSx SINE Alu 39 312 0 276 180 138 66 chr1 100993980 100994098 -141670255 + L1M4 LINE L1 2915 3050 -3096 293 268 52 26 chr1 100994297 100994450 -141669903 - LTR33A LTR ERVL -5 518 362 216 189 0 78 chr1 100994649 100994739 -141669614 + A-rich Low_complexity Low_complexity 2 84 0 289 303 21 28 chr1 100994829 100994974 -141669379 - L1MC4a LINE L1 -487 5634 5491 240 287 128 0 chr1 100995068 100995162 -141669191 + MIR SINE MIR 157 262 0 342 248 153 20 chr1 100995268 100995470 -141668883 - L1MC4a LINE L1 -798 5348 5120 267 273 76 8 chr1 100995520 100995652 -141668701 - L1MC4a LINE L1 -1105 5041 4901 189 0 0 0 chr1 100996022 100996043 -141668310 + (GA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr1 100996701 100996723 -141667630 + (CA)n Simple_repeat Simple_repeat 1 22 0 1939 138 24 0 chr1 100997127 100997417 -141666936 - AluJb SINE Alu -15 297 1 566 303 106 0 chr1 100998262 100998546 -141665807 + L2 LINE L2 2467 2780 -534 2395 248 61 32 chr1 100998608 100998861 -141665492 - L1MC4a LINE L1 -1778 6030 5786 2228 129 0 0 chr1 100998861 100999171 -141665182 - AluSg SINE Alu 0 310 1 2395 248 61 32 chr1 100999171 100999672 -141664681 - L1MC4a LINE L1 -2022 5786 5254 372 271 98 58 chr1 100999719 101000047 -141664306 + L2 LINE L2 2853 3193 -120 1927 193 68 27 chr1 101000064 101000505 -141663848 + LTR2B LTR ERV1 32 490 0 2601 126 3 10 chr1 101000505 101000895 -141663458 + Harlequin LTR ERV1 1 387 -6509 * 4313 62 6 4 chr1 101000888 101001433 -141662920 + Harlequin LTR ERV1 263 808 -6088 304 75 0 0 chr1 101001429 101001469 -141662884 + Harlequin LTR ERV1 769 808 -6088 * 285 100 0 0 chr1 101001465 101001505 -141662848 + Harlequin LTR ERV1 769 808 -6088 * 285 100 0 0 chr1 101001501 101001541 -141662812 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101001537 101001577 -141662776 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101001573 101001613 -141662740 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101001609 101001649 -141662704 + Harlequin LTR ERV1 769 808 -6088 * 304 75 0 0 chr1 101001645 101001685 -141662668 + Harlequin LTR ERV1 769 808 -6088 304 75 0 0 chr1 101001681 101001721 -141662632 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101001717 101001757 -141662596 + Harlequin LTR ERV1 769 808 -6088 * 276 83 0 0 chr1 101001757 101001793 -141662560 + Harlequin LTR ERV1 773 808 -6088 * 304 75 0 0 chr1 101001789 101001829 -141662524 + Harlequin LTR ERV1 769 808 -6088 304 75 0 0 chr1 101001825 101001865 -141662488 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101001861 101001901 -141662452 + Harlequin LTR ERV1 769 808 -6088 * 285 100 0 0 chr1 101001897 101001937 -141662416 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101001969 101002009 -141662344 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101002005 101002045 -141662308 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101002041 101002081 -141662272 + Harlequin LTR ERV1 769 808 -6088 285 100 0 0 chr1 101002077 101002117 -141662236 + Harlequin LTR ERV1 769 808 -6088 259 146 0 0 chr1 101002112 101002153 -141662200 + Harlequin LTR ERV1 765 805 -7008 * 4362 58 47 20 chr1 101002149 101002694 -141661659 + Harlequin LTR ERV1 769 1335 -5561 213 39 0 0 chr1 101002694 101002720 -141661633 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4362 58 47 20 chr1 101002720 101002811 -141661542 + Harlequin LTR ERV1 1335 1422 -5474 * 6201 78 6 7 chr1 101002792 101003679 -141660674 + Harlequin LTR ERV1 1806 2691 -4205 214 246 121 3 chr1 101004406 101004637 -141659716 + L2 LINE L2 278 584 -2730 1386 255 94 19 chr1 101004655 101005196 -141659157 + L2 LINE L2 2047 2628 -686 564 281 138 0 chr1 101005284 101005501 -141658852 - HERV16 LTR ERVL -3784 1212 966 1886 198 89 36 chr1 101005502 101006013 -141658340 + MLT1E LTR MaLR 3 593 0 1057 305 23 18 chr1 101006307 101006697 -141657656 - LTR16A LTR ERVL 0 450 59 198 313 61 0 chr1 101007061 101007160 -141657193 - MIR SINE MIR -62 200 96 1239 233 73 152 chr1 101007239 101007762 -141656591 + L2 LINE L2 2168 2730 -583 533 152 0 0 chr1 101007762 101007841 -141656512 + FLAM SINE Alu 38 116 -27 1239 233 73 152 chr1 101007841 101007854 -141656499 + L2 LINE L2 2730 2742 -571 1569 208 25 0 chr1 101007854 101008138 -141656215 + AluJo SINE Alu 1 291 -21 1239 233 73 152 chr1 101008138 101008736 -141655617 + L2 LINE L2 2742 3313 0 23 0 0 0 chr1 101009097 101009120 -141655233 + AT_rich Low_complexity Low_complexity 1 23 0 725 338 38 55 chr1 101009530 101010184 -141654169 + L1MEc LINE L1 37 679 -5717 632 263 14 5 chr1 101010256 101010465 -141653888 + L1MEc LINE L1 674 884 -5512 295 210 86 12 chr1 101010683 101010764 -141653589 - MIR3 SINE MIR -11 197 111 232 104 0 104 chr1 101010865 101010913 -141653440 + LTR11 LTR ERV 56 98 -586 786 307 22 19 chr1 101010913 101011278 -141653075 - L2 LINE L2 -59 3254 2889 206 362 109 36 chr1 101011490 101011711 -141652642 + MIR SINE MIR 20 256 -6 369 256 34 26 chr1 101011791 101011908 -141652445 - L2 LINE L2 -5 3308 3191 2076 170 70 32 chr1 101011915 101012357 -141651996 - LTR2B LTR ERV1 0 490 32 33862 64 6 5 chr1 101012376 101016583 -141647770 - Harlequin LTR ERV1 0 6896 2687 266 224 0 0 chr1 101016766 101016815 -141647538 - MER5B DNA MER1_type -104 74 26 230 246 58 72 chr1 101016818 101016956 -141647397 - MER112 DNA MER1_type -23 237 102 296 224 0 15 chr1 101018303 101018370 -141645983 - MIR3 SINE MIR 0 208 143 198 0 0 0 chr1 101018855 101018877 -141645476 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 204 81 0 54 chr1 101018881 101018918 -141645435 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 324 70 0 0 chr1 101018919 101018962 -141645391 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 1763 155 11 4 chr1 101018965 101019242 -141645111 - AluJo SINE Alu -33 279 1 360 304 94 16 chr1 101019544 101019735 -141644618 - MIR SINE MIR -27 235 30 974 200 11 0 chr1 101020509 101020694 -141643659 + MER5A DNA MER1_type 2 188 -1 228 287 66 25 chr1 101020751 101020873 -141643480 + MIR3 SINE MIR 78 204 -4 232 293 38 19 chr1 101022582 101022688 -141641665 - MER5B DNA MER1_type -5 173 66 285 146 0 0 chr1 101023682 101023730 -141640623 + (TG)n Simple_repeat Simple_repeat 1 48 0 420 20 0 0 chr1 101023800 101023849 -141640504 + (TG)n Simple_repeat Simple_repeat 1 49 0 402 21 0 0 chr1 101023919 101023966 -141640387 + (TG)n Simple_repeat Simple_repeat 1 47 0 323 257 101 18 chr1 101025509 101025618 -141638735 + MIR SINE MIR 25 142 -66 234 0 0 0 chr1 101026180 101026206 -141638147 + (T)n Simple_repeat Simple_repeat 1 26 0 225 295 53 42 chr1 101027172 101027362 -141636991 + MIR SINE MIR 6 197 -65 189 287 139 0 chr1 101027469 101027577 -141636776 + MIR SINE MIR 108 230 -32 225 160 20 40 chr1 101028737 101028787 -141635566 + CT-rich Low_complexity Low_complexity 3 51 0 1883 180 3 0 chr1 101029488 101029793 -141634560 - AluJo SINE Alu -2 310 5 22 0 0 0 chr1 101029865 101029887 -141634466 + AT_rich Low_complexity Low_complexity 1 22 0 2176 135 37 0 chr1 101030048 101030375 -141633978 + MER7A DNA MER2_type 1 337 -9 463 249 60 0 chr1 101031606 101031756 -141632597 + MIR SINE MIR 23 185 -60 788 194 17 28 chr1 101032316 101032496 -141631857 - MER5B DNA MER1_type 0 178 1 347 299 30 45 chr1 101032496 101032630 -141631723 - MIR3 SINE MIR -45 163 32 209 339 82 23 chr1 101034196 101034367 -141629986 - L3b LINE CR1 -82 1501 1321 458 288 26 52 chr1 101034691 101034882 -141629471 - MIR3 SINE MIR -3 205 20 21 0 0 0 chr1 101035101 101035122 -141629231 + AT_rich Low_complexity Low_complexity 1 21 0 547 263 101 35 chr1 101037421 101037649 -141626704 - MIR SINE MIR 0 262 20 47 33 0 0 chr1 101038952 101039013 -141625340 + AT_rich Low_complexity Low_complexity 1 61 0 340 242 55 0 chr1 101042450 101042541 -141621812 - MIR3 SINE MIR -29 179 84 1621 167 45 3 chr1 101042947 101043235 -141621118 + AluJo SINE Alu 1 300 -12 1656 146 22 4 chr1 101043553 101043820 -141620533 + Tigger5 DNA MER2_type 2051 2322 -1 370 318 15 50 chr1 101045704 101045902 -141618451 + MIR3 SINE MIR 2 192 -16 4273 121 11 17 chr1 101046199 101046838 -141617515 - MER41B LTR ERV1 0 635 1 2228 97 3 23 chr1 101047468 101047776 -141616577 + AluSg SINE Alu 1 302 -8 600 255 274 5 chr1 101048340 101048544 -141615809 - MIR SINE MIR -1 261 3 2398 107 0 0 chr1 101048641 101048951 -141615402 - AluSx SINE Alu -2 310 1 2287 91 0 0 chr1 101049948 101050234 -141614119 - AluSx SINE Alu -26 286 1 581 183 84 21 chr1 101050297 101050439 -141613914 - L1MC5 LINE L1 -112 7849 7699 224 30 30 0 chr1 101050480 101050513 -141613840 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1042 42 0 0 chr1 101050513 101050631 -141613722 - AluY SINE Alu -192 119 2 975 207 13 48 chr1 101050799 101051026 -141613327 - MER20 DNA MER1_type 0 219 1 205 39 0 0 chr1 101052435 101052461 -141611892 + MER91B DNA MER1_type 36 61 -129 1437 197 52 0 chr1 101052796 101053086 -141611267 - MER58B DNA MER1_type 0 341 37 213 292 124 18 chr1 101053214 101053327 -141611026 + MIR SINE MIR 24 148 -114 235 292 115 0 chr1 101053445 101053541 -141610812 - L2 LINE L2 -2 3270 3164 252 122 0 0 chr1 101053542 101053583 -141610770 + (A)n Simple_repeat Simple_repeat 1 41 0 223 361 56 35 chr1 101053852 101054140 -141610213 - L2 LINE L2 -467 2847 2554 1604 152 47 20 chr1 101054190 101054486 -141609867 + AluJb SINE Alu 1 304 -8 209 261 46 31 chr1 101055420 101055485 -141608868 - MIR3 SINE MIR -32 176 111 182 238 71 0 chr1 101057365 101057407 -141606946 + L2 LINE L2 3223 3267 -5 1659 125 39 4 chr1 101058729 101058985 -141605368 + AluJb SINE Alu 26 290 -22 1178 256 156 7 chr1 101060530 101060941 -141603412 - HAL1 LINE L1 0 2507 2036 917 113 0 0 chr1 101060969 101061102 -141603251 - AluY SINE Alu 0 311 179 802 251 187 9 chr1 101061106 101062270 -141602083 - HAL1 LINE L1 -484 2023 618 1814 266 42 19 chr1 101062590 101063113 -141601240 - HAL1 LINE L1 -1962 545 11 216 0 0 0 chr1 101063132 101063156 -141601197 + (T)n Simple_repeat Simple_repeat 1 24 0 324 305 51 68 chr1 101063165 101063342 -141601011 - MIR3 SINE MIR -27 181 8 407 254 72 29 chr1 101063501 101063639 -141600714 - L2 LINE L2 -4 3309 3166 699 294 77 8 chr1 101065108 101065356 -141598997 - L3b LINE CR1 -59 1524 1260 790 178 52 46 chr1 101065641 101065815 -141598538 - FAM SINE Alu 0 175 1 2276 105 0 0 chr1 101067375 101067681 -141596672 + AluY SINE Alu 1 306 -5 375 141 0 0 chr1 101069245 101069309 -141595044 + (CAGCC)n Simple_repeat Simple_repeat 1 64 0 195 42 0 0 chr1 101070571 101070595 -141593758 + (A)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr1 101071477 101071503 -141592850 + AT_rich Low_complexity Low_complexity 1 26 0 31 26 0 0 chr1 101071525 101071563 -141592790 + AT_rich Low_complexity Low_complexity 1 38 0 562 261 78 59 chr1 101072965 101073287 -141591066 + L2 LINE L2 2369 2696 -618 2478 206 114 31 chr1 101073411 101074110 -141590243 + MER21B LTR ERV1 96 852 -11 272 309 235 29 chr1 101074302 101074351 -141590002 + L3 LINE CR1 398 436 -1141 2348 118 96 70 chr1 101074351 101074407 -141589946 + MSTA LTR MaLR 1 54 -374 2301 101 0 0 chr1 101074407 101074703 -141589650 + AluSx SINE Alu 1 296 -16 2316 104 3 3 chr1 101074713 101075022 -141589331 + AluSx SINE Alu 1 309 -3 2348 118 96 70 chr1 101075022 101075371 -141588982 + MSTA LTR MaLR 62 428 0 272 309 235 29 chr1 101075371 101075767 -141588586 + L3 LINE CR1 436 935 -642 * 460 271 159 39 chr1 101075756 101076149 -141588204 + L2 LINE L2 2559 3016 -297 344 261 8 75 chr1 101076178 101076312 -141588041 + L2 LINE L2 3137 3261 -11 2597 150 21 26 chr1 101076339 101076765 -141587588 - MSTB LTR MaLR -2 424 1 1288 198 61 77 chr1 101076839 101077218 -141587135 - MLT2D LTR ERVL -41 373 1 327 320 216 18 chr1 101077294 101077572 -141586781 + L3 LINE CR1 1160 1492 -85 284 284 163 9 chr1 101081847 101081977 -141582376 - MIR SINE MIR -72 136 8 2119 114 0 0 chr1 101082193 101082526 -141581827 - AluSx SINE Alu 0 333 1 210 71 0 0 chr1 101083307 101083335 -141581018 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 2284 114 56 15 chr1 101083467 101083791 -141580562 + MER1B DNA MER1_type 1 337 0 2135 116 0 13 chr1 101084632 101084934 -141579419 + AluSx SINE Alu 1 298 -14 1887 159 0 3 chr1 101086224 101086514 -141577839 - AluJo SINE Alu -20 292 4 675 236 19 0 chr1 101086732 101086889 -141577464 - MIR SINE MIR -75 187 28 524 286 42 16 chr1 101086932 101087121 -141577232 - L2 LINE L2 0 3313 3120 1813 154 4 4 chr1 101087187 101087467 -141576886 + AluJb SINE Alu 1 280 -32 1968 128 27 20 chr1 101088787 101089083 -141575270 + AluSx SINE Alu 6 303 -9 674 140 28 9 chr1 101089275 101089382 -141574971 - FLAM_C SINE Alu -18 125 17 362 219 136 45 chr1 101091612 101091767 -141572586 + MIR SINE MIR 20 188 -74 266 345 28 45 chr1 101093504 101093681 -141570672 - L2 LINE L2 -23 3290 3117 953 266 37 13 chr1 101093904 101094266 -141570087 - MLT1J LTR MaLR -3 508 75 537 296 136 42 chr1 101094325 101094885 -141569468 - L2 LINE L2 -427 2887 2254 2174 124 7 0 chr1 101094885 101095191 -141569162 + AluSx SINE Alu 1 308 -4 537 296 136 42 chr1 101095191 101095291 -141569062 - L2 LINE L2 -1060 2254 2165 373 215 136 44 chr1 101095584 101095750 -141568603 - L1MC/D LINE L1 -459 5662 5529 362 255 120 38 chr1 101095834 101096018 -141568335 - L1MC4 LINE L1 -1 8041 7843 186 293 248 0 chr1 101096289 101096422 -141567931 + MIR SINE MIR 85 250 -12 2347 84 7 0 chr1 101096445 101096743 -141567610 - AluSq SINE Alu -13 300 1 1007 165 0 6 chr1 101097018 101097176 -141567177 - AluJb SINE Alu -12 300 144 297 240 0 0 chr1 101097185 101097260 -141567093 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 253 191 0 0 chr1 101097260 101097302 -141567051 + (TG)n Simple_repeat Simple_repeat 2 43 0 803 179 0 0 chr1 101097302 101097436 -141566917 - AluJb SINE Alu -178 134 1 437 300 49 63 chr1 101098770 101098993 -141565360 - L2 LINE L2 0 3272 3053 1696 153 7 53 chr1 101100559 101100860 -141563493 + AluJo SINE Alu 1 287 -25 284 234 297 0 chr1 101101165 101101293 -141563060 - MIR SINE MIR -11 251 86 2850 154 44 41 chr1 101102617 101103089 -141561264 + L1MB8 LINE L1 5566 6042 -136 2279 104 3 0 chr1 101103089 101103386 -141560967 + AluSx SINE Alu 1 298 -14 2850 154 44 41 chr1 101103386 101103524 -141560829 + L1MB8 LINE L1 6042 6178 0 2245 124 0 3 chr1 101103762 101104069 -141560284 - AluSx SINE Alu -6 306 1 2076 151 14 12 chr1 101107124 101107469 -141556884 - MER7A DNA MER2_type -2 344 1 212 270 27 14 chr1 101107471 101107545 -141556808 + CT-rich Low_complexity Low_complexity 1 75 0 2277 70 3 40 chr1 101108276 101108576 -141555777 - AluSc SINE Alu -20 289 1 1626 117 140 19 chr1 101109635 101109899 -141554454 - AluJb SINE Alu -16 296 1 461 184 41 0 chr1 101110166 101110264 -141554089 + MIR SINE MIR 57 158 -104 2372 94 0 7 chr1 101110264 101110571 -141553782 - AluSc SINE Alu -4 305 1 2323 112 0 0 chr1 101110819 101111123 -141553230 - AluSx SINE Alu -8 304 1 2070 136 14 0 chr1 101111528 101111823 -141552530 + AluJb SINE Alu 1 299 -13 191 350 20 20 chr1 101111828 101111928 -141552425 - L2 LINE L2 -182 3090 2991 2099 153 32 48 chr1 101112067 101112504 -141551849 - L1MB7 LINE L1 0 6184 5755 841 189 56 28 chr1 101112504 101112684 -141551669 + MER58A DNA MER1_type 40 224 0 441 0 0 0 chr1 101116658 101116707 -141547646 + (TG)n Simple_repeat Simple_repeat 2 50 0 2357 98 7 0 chr1 101116734 101117040 -141547313 + AluSq SINE Alu 1 308 -5 1814 223 80 17 chr1 101117364 101117839 -141546514 + MLT1D LTR MaLR 1 505 0 278 288 140 36 chr1 101117853 101118075 -141546278 + L2 LINE L2 2354 2598 -716 865 268 38 0 chr1 101118116 101118351 -141546002 + MIR SINE MIR 18 261 -1 661 312 161 8 chr1 101118369 101118920 -141545433 + L2 LINE L2 2667 3308 -5 393 75 0 0 chr1 101119970 101120023 -141544330 + (CTGGGG)n Simple_repeat Simple_repeat 1 53 0 412 294 28 28 chr1 101121003 101121146 -141543207 - MIR SINE MIR -71 191 49 255 149 0 162 chr1 101121222 101121296 -141543057 - L2 LINE L2 -3 3269 3208 498 285 111 8 chr1 101122061 101122296 -141542057 - L2 LINE L2 -251 3062 2804 457 292 56 0 chr1 101122485 101122646 -141541707 + MIR3 SINE MIR 37 206 -2 2145 113 20 0 chr1 101123156 101123448 -141540905 + AluSx SINE Alu 1 298 -14 2081 122 0 7 chr1 101123899 101124194 -141540159 - AluSx SINE Alu -19 293 1 229 272 111 0 chr1 101124240 101124321 -141540032 - MIR3 SINE MIR -7 201 112 855 152 23 8 chr1 101124363 101124495 -141539858 - AluSq/x SINE Alu -179 134 1 246 239 0 42 chr1 101125687 101125758 -141538595 + L2 LINE L2 3123 3190 -82 231 250 36 62 chr1 101125787 101125868 -141538485 + MER113 DNA MER1_type? 3 82 -439 2474 70 0 7 chr1 101125868 101126169 -141538184 - AluY SINE Alu -12 299 1 231 250 36 62 chr1 101126169 101126199 -141538154 + MER113 DNA MER1_type? 82 111 -410 719 275 48 8 chr1 101128355 101128606 -141535747 - MIR SINE MIR 0 262 2 2740 120 51 5 chr1 101128732 101129141 -141535212 - MSTA LTR MaLR 0 428 1 2438 81 3 0 chr1 101129363 101129661 -141534692 - AluSp SINE Alu -14 299 1 219 262 153 11 chr1 101129909 101130026 -141534327 + MIR SINE MIR 20 150 -108 3231 127 33 14 chr1 101130467 101130985 -141533368 - LTR26B LTR ERV1 -3 528 1 1555 161 25 52 chr1 101131267 101131553 -141532800 + AluJo SINE Alu 12 289 -23 279 281 46 114 chr1 101132278 101132430 -141531923 - L2 LINE L2 0 3272 3146 1407 103 70 5 chr1 101132430 101132643 -141531710 + MER30 DNA MER1_type 4 230 0 279 281 46 114 chr1 101132643 101132771 -141531582 - L2 LINE L2 -126 3146 3011 204 97 0 0 chr1 101133252 101133283 -141531070 + (T)n Simple_repeat Simple_repeat 1 31 0 189 147 0 0 chr1 101135795 101135829 -141528524 + (T)n Simple_repeat Simple_repeat 1 34 0 289 103 0 0 chr1 101137098 101137137 -141527216 + U2 snRNA snRNA 2 40 -148 1436 130 39 17 chr1 101137156 101137386 -141526967 - AluSg/x SINE Alu -10 302 68 198 0 0 0 chr1 101138186 101138208 -141526145 + (T)n Simple_repeat Simple_repeat 1 22 0 396 133 27 0 chr1 101138621 101138696 -141525657 - MER116 DNA Mariner -3 77 1 3155 196 85 49 chr1 101139880 101140854 -141523499 + L1MC4 LINE L1 7033 8041 -1 412 286 113 11 chr1 101140994 101141179 -141523174 - MIR SINE MIR -11 251 48 430 183 0 24 chr1 101141374 101141456 -141522897 - Charlie5 DNA MER1_type -2527 85 6 207 257 257 9 chr1 101141510 101141623 -141522730 + MIR SINE MIR 85 225 -37 1208 159 65 0 chr1 101143414 101143646 -141520707 + L1MB7 LINE L1 5330 5576 -598 2793 148 26 8 chr1 101143651 101144152 -141520201 + L1MB7 LINE L1 5662 6171 -13 2033 147 0 16 chr1 101144173 101144487 -141519866 - AluJb SINE Alu -2 310 2 1936 162 0 13 chr1 101144536 101144851 -141519502 - AluJb SINE Alu -1 311 1 888 177 39 11 chr1 101145256 101145437 -141518916 + MER53 DNA DNA 4 189 0 730 216 11 33 chr1 101145479 101145660 -141518693 + MIR3 SINE MIR 30 206 -2 194 303 101 8 chr1 101146484 101146603 -141517750 - L2 LINE L2 -1 3271 3142 602 241 113 10 chr1 101148615 101148810 -141515543 - MIR SINE MIR -5 257 43 279 0 0 0 chr1 101148838 101148869 -141515484 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1491 242 8 22 chr1 101149590 101149991 -141514362 - MLT2C1 LTR ERVL -2 395 1 359 320 40 20 chr1 101150691 101150841 -141513512 + MIR3 SINE MIR 5 157 -51 933 208 80 58 chr1 101153119 101153207 -141511146 - MER33 DNA MER1_type -2262 323 238 2315 94 7 3 chr1 101153207 101153506 -141510847 + AluSq SINE Alu 1 300 -13 933 208 80 58 chr1 101153506 101153729 -141510624 - MER33 DNA MER1_type -2347 238 5 294 227 0 15 chr1 101153798 101153864 -141510489 - MER117 DNA MER1_type -84 113 49 381 325 110 27 chr1 101153888 101154180 -141510173 - L2 LINE L2 -1 3312 2997 361 348 52 47 chr1 101155204 101155566 -141508787 - L2 LINE L2 -5 3267 2904 717 255 87 13 chr1 101156491 101156722 -141507631 + MIR SINE MIR 15 262 0 2600 40 7 3 chr1 101157099 101157396 -141506957 - AluY SINE Alu -13 298 1 302 308 37 0 chr1 101157605 101157712 -141506641 - L2 LINE L2 -248 3024 2914 634 275 275 9 chr1 101158211 101158549 -141505804 - LTR16A LTR ERVL -7 443 16 1151 264 42 91 chr1 101158661 101159332 -141505021 + HAL1 LINE L1 421 1058 -1449 815 267 90 6 chr1 101159333 101159586 -141504767 - MLT1J1 LTR MaLR -68 378 99 603 259 144 65 chr1 101159675 101159777 -141504576 + HAL1 LINE L1 1840 1932 -575 1705 137 103 0 chr1 101159777 101160048 -141504305 + AluJo SINE Alu 1 299 -13 603 259 144 65 chr1 101160048 101160562 -141503791 + HAL1 LINE L1 1932 2505 -2 338 217 98 22 chr1 101160567 101160659 -141503694 - MLT1K LTR MaLR -90 498 400 4251 189 13 35 chr1 101160659 101161533 -141502820 + MER21B LTR ERV1 1 854 -9 397 294 105 13 chr1 101161547 101161700 -141502653 - MLT1K LTR MaLR -184 404 238 23 0 0 0 chr1 101162126 101162149 -141502204 + AT_rich Low_complexity Low_complexity 1 23 0 188 270 27 40 chr1 101162231 101162305 -141502048 - MIR3 SINE MIR -34 174 102 259 315 0 0 chr1 101162853 101162964 -141501389 + CT-rich Low_complexity Low_complexity 1 111 0 286 225 12 0 chr1 101164282 101164362 -141499991 + CT-rich Low_complexity Low_complexity 1 81 0 2304 96 8 41 chr1 101164785 101164846 -141499507 - THE1A LTR MaLR -1 354 293 2160 104 0 50 chr1 101164846 101165163 -141499190 - AluSc SINE Alu -8 301 1 2304 96 8 41 chr1 101165163 101165467 -141498886 - THE1A LTR MaLR -62 293 1 1337 36 12 0 chr1 101165467 101165633 -141498720 - THE1-int LTR MaLR 0 1580 1413 436 17 17 33 chr1 101165633 101165693 -141498660 - THE1B LTR MaLR -305 59 1 691 251 84 0 chr1 101166116 101166331 -141498022 - MIR SINE MIR -2 260 28 2765 120 21 16 chr1 101166445 101166484 -141497869 - MSTA LTR MaLR 0 428 391 2326 109 0 0 chr1 101166484 101166786 -141497567 + AluSc SINE Alu 1 302 -7 2765 120 21 16 chr1 101166786 101167172 -141497181 - MSTA LTR MaLR -37 391 1 2156 78 0 11 chr1 101167345 101167613 -141496740 + AluSg SINE Alu 38 302 -8 735 270 124 20 chr1 101167625 101167981 -141496372 + L1ME4a LINE L1 5695 6087 -34 923 118 24 0 chr1 101168092 101168219 -141496134 - AluSp SINE Alu -183 130 1 2235 109 0 7 chr1 101168287 101168590 -141495763 + AluSx SINE Alu 3 303 -9 380 290 206 9 chr1 101169668 101169882 -141494471 - MIR SINE MIR 0 262 7 216 169 31 62 chr1 101170315 101170354 -141493999 + GA-rich Low_complexity Low_complexity 1 39 -24 987 168 0 19 chr1 101170354 101170515 -141493838 + FRAM SINE Alu 2 159 -7 216 169 31 62 chr1 101170515 101170540 -141493813 + GA-rich Low_complexity Low_complexity 39 63 0 202 273 61 0 chr1 101172144 101172210 -141492143 - MIR SINE MIR -96 166 97 1129 125 0 28 chr1 101172385 101172561 -141491792 + FRAM SINE Alu 1 167 -9 602 241 122 27 chr1 101172570 101172640 -141491713 + L1ME4a LINE L1 5611 5673 -448 2124 129 148 20 chr1 101172640 101172810 -141491543 + LTR54B LTR ERV1 1 148 -350 2072 134 0 16 chr1 101172810 101173124 -141491229 + AluSx SINE Alu 1 309 -3 2124 129 148 20 chr1 101173124 101173393 -141490960 + LTR54B LTR ERV1 148 496 -2 602 241 122 27 chr1 101173393 101173617 -141490736 + L1ME4a LINE L1 5673 5933 -188 2224 118 0 3 chr1 101174170 101174467 -141489886 - AluSq SINE Alu -17 296 1 970 250 83 74 chr1 101174501 101175333 -141489020 + L2 LINE L2 2474 3313 0 25 31 0 0 chr1 101175414 101175446 -141488907 + AT_rich Low_complexity Low_complexity 1 32 0 4374 169 95 16 chr1 101175474 101176518 -141487835 - L1MB8 LINE L1 -1 6177 5058 1375 182 7 81 chr1 101176519 101176826 -141487527 - AluJb SINE Alu -2 310 27 4512 215 58 113 chr1 101176857 101177974 -141486379 - L1MB8 LINE L1 -1112 5034 3856 646 200 0 22 chr1 101177974 101178109 -141486244 - AluJo SINE Alu -76 236 105 4512 215 58 113 chr1 101178109 101178354 -141485999 - L1MB8 LINE L1 -2290 3856 3599 2588 57 0 10 chr1 101178354 101178668 -141485685 - AluY SINE Alu 0 311 1 4512 215 58 113 chr1 101178668 101178771 -141485582 - L1MB8 LINE L1 -2547 3599 3492 2505 60 0 0 chr1 101178771 101179069 -141485284 - AluY SINE Alu -13 298 1 4512 215 58 113 chr1 101179069 101179140 -141485213 - L1MB8 LINE L1 -2654 3492 3419 1284 155 88 118 chr1 101179140 101179604 -141484749 - LTR7 LTR ERV1 0 450 1 4512 215 58 113 chr1 101179604 101179781 -141484572 - L1MB8 LINE L1 -2727 3419 3287 220 283 0 17 chr1 101180622 101180682 -141483671 + L2 LINE L2 3195 3253 -60 912 185 6 11 chr1 101181340 101181518 -141482835 - MER96B DNA MER1_type? -240 177 1 262 196 0 0 chr1 101181825 101181876 -141482477 + L1MC5 LINE L1 7728 7778 -183 5780 110 34 16 chr1 101181909 101182837 -141481516 - L1PA13 LINE L1 -2 6161 5222 1143 265 152 29 chr1 101184868 101185416 -141478937 - MLT1L LTR MaLR 0 615 1 846 279 32 38 chr1 101185547 101185887 -141478466 - HAL1b LINE L1 -685 663 326 1956 94 0 4 chr1 101185896 101186150 -141478203 + AluSx SINE Alu 39 291 -21 34 65 0 0 chr1 101186318 101186380 -141477973 + AT_rich Low_complexity Low_complexity 1 62 0 1946 124 50 17 chr1 101187356 101187655 -141476698 + AluJo SINE Alu 1 309 -3 440 310 111 18 chr1 101187928 101188154 -141476199 + L3 LINE CR1 1259 1505 -72 776 276 78 42 chr1 101189830 101190163 -141474190 - MLT1J2 LTR MaLR -54 396 52 281 281 39 31 chr1 101190255 101190383 -141473970 + L2 LINE L2 2176 2304 -1010 2127 145 0 0 chr1 101190503 101190807 -141473546 + AluJb SINE Alu 2 305 -7 1800 139 9 65 chr1 101190812 101191135 -141473218 + AluJo SINE Alu 1 305 -7 2329 89 3 0 chr1 101191456 101191749 -141472604 + AluSg SINE Alu 1 294 -16 1227 151 102 36 chr1 101191942 101192206 -141472147 + AluJo SINE Alu 50 312 0 234 234 0 0 chr1 101192699 101192746 -141471607 + MER116 DNA Mariner 8 54 -26 2099 128 3 7 chr1 101193172 101193477 -141470876 - AluSq SINE Alu -9 304 1 1797 164 16 7 chr1 101193479 101193784 -141470569 - AluJo SINE Alu -4 308 1 507 355 52 4 chr1 101193927 101194158 -141470195 + MIR SINE MIR 21 262 0 879 238 36 22 chr1 101195581 101195804 -141468549 - MIR SINE MIR 0 262 37 434 254 17 0 chr1 101197966 101198084 -141466269 + L1ME4a LINE L1 5708 5827 -294 6575 130 1 1 chr1 101198090 101199370 -141464983 + L1PB1 LINE L1 4872 6151 0 829 149 0 0 chr1 101199388 101199509 -141464844 + AluJb SINE Alu 1 121 -191 24 0 0 0 chr1 101199509 101199533 -141464820 + AT_rich Low_complexity Low_complexity 1 24 0 343 255 160 0 chr1 101200714 101200820 -141463533 - L2 LINE L2 0 3313 3191 468 51 0 0 chr1 101201059 101201118 -141463235 + (TG)n Simple_repeat Simple_repeat 2 60 0 1046 148 32 60 chr1 101201172 101201388 -141462965 - MLT1A1 LTR MaLR 0 365 156 898 104 0 37 chr1 101201394 101201528 -141462825 - AluSg/x SINE Alu -14 298 170 943 161 2 11 chr1 101201528 101201692 -141462661 - MLT1A1 LTR MaLR -223 142 1 558 182 0 69 chr1 101202357 101202516 -141461837 + MER45B DNA AcHobo 827 974 -66 567 223 66 51 chr1 101202520 101202717 -141461636 + MIR SINE MIR 48 247 -15 2750 202 59 4 chr1 101202925 101203464 -141460889 + MER45B DNA AcHobo 1 569 -471 991 139 7 0 chr1 101203566 101203710 -141460643 + AluSg/x SINE Alu 152 296 -16 335 341 111 0 chr1 101204201 101204405 -141459948 + MIR SINE MIR 14 240 -22 2368 49 0 11 chr1 101204730 101205017 -141459336 + AluY SINE Alu 1 284 -27 453 89 0 133 chr1 101205327 101205377 -141458976 - MADE1 DNA Mariner -2 78 44 2163 116 10 3 chr1 101205377 101205679 -141458674 + AluSx SINE Alu 1 304 -8 453 89 0 133 chr1 101205679 101205718 -141458635 - MADE1 DNA Mariner -36 44 1 22 0 0 0 chr1 101205768 101205790 -141458563 + AT_rich Low_complexity Low_complexity 1 22 0 231 204 327 9 chr1 101206095 101206208 -141458145 + MIR SINE MIR 113 261 -1 221 273 34 45 chr1 101206232 101206320 -141458033 + MIR3 SINE MIR 111 197 -11 234 0 0 0 chr1 101206620 101206646 -141457707 + (A)n Simple_repeat Simple_repeat 1 26 0 1901 151 7 16 chr1 101206967 101207272 -141457081 + AluJb SINE Alu 1 302 -10 489 279 87 75 chr1 101207298 101207563 -141456790 - L2 LINE L2 -7 3265 2998 2125 198 85 37 chr1 101207619 101208171 -141456182 + L1ME2 LINE L1 5556 6137 -27 1859 176 0 0 chr1 101208171 101208461 -141455892 + AluJb SINE Alu 2 291 -21 234 227 227 0 chr1 101208539 101208605 -141455748 + MIR SINE MIR 8 88 -174 1098 154 8 124 chr1 101208873 101209001 -141455352 + L1MB8 LINE L1 5435 5518 -666 2149 104 4 0 chr1 101209001 101209280 -141455073 + AluSg SINE Alu 1 280 -30 1098 154 8 124 chr1 101209280 101209417 -141454936 + L1MB8 LINE L1 5518 5669 -515 2528 189 19 17 chr1 101209455 101209984 -141454369 + L1MB8 LINE L1 5649 6178 0 2193 102 7 0 chr1 101210027 101210312 -141454041 + AluSx SINE Alu 10 296 -16 266 254 71 56 chr1 101210739 101210865 -141453488 + MLT1L LTR MaLR 142 269 -346 21 0 0 0 chr1 101211060 101211081 -141453272 + AT_rich Low_complexity Low_complexity 1 21 0 300 196 0 0 chr1 101211977 101212028 -141452325 + L2 LINE L2 3216 3266 -6 2166 121 0 13 chr1 101213394 101213709 -141450644 + AluSx SINE Alu 1 311 -1 207 69 0 0 chr1 101214045 101214074 -141450279 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1624 151 4 31 chr1 101214074 101214333 -141450020 - 7SLRNA srpRNA srpRNA -21 299 48 689 226 26 21 chr1 101216714 101216904 -141447449 - MIR SINE MIR 0 262 72 2002 143 0 17 chr1 101217022 101217323 -141447030 + AluSx SINE Alu 1 296 -16 2102 117 20 3 chr1 101217323 101217622 -141446731 + AluSg SINE Alu 1 305 -5 1181 121 0 0 chr1 101217622 101217788 -141446565 + AluSg/x SINE Alu 139 304 -8 2048 136 0 38 chr1 101217788 101218104 -141446249 + AluSx SINE Alu 1 304 -8 186 103 0 0 chr1 101218195 101218224 -141446129 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 351 241 29 73 chr1 101218825 101218962 -141445391 - L2 LINE L2 -22 3291 3161 183 42 0 0 chr1 101218973 101218997 -141445356 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2109 116 0 3 chr1 101218997 101219281 -141445072 - AluSx SINE Alu -28 284 2 313 333 0 0 chr1 101219632 101219743 -141444610 + L3 LINE CR1 1295 1405 -172 2549 72 3 0 chr1 101219850 101220157 -141444196 + AluY SINE Alu 1 308 -3 2235 93 3 14 chr1 101220276 101220586 -141443767 + AluSp SINE Alu 9 313 0 498 257 145 6 chr1 101220652 101220831 -141443522 - MIR SINE MIR -51 211 8 22 0 0 0 chr1 101220931 101220953 -141443400 + AT_rich Low_complexity Low_complexity 1 22 0 2135 105 14 14 chr1 101221517 101221835 -141442518 - AluSg SINE Alu 0 318 1 1048 162 83 23 chr1 101222489 101222754 -141441599 - Charlie1a DNA MER1_type -1 1454 1174 2441 55 0 32 chr1 101222754 101223062 -141441291 - AluY SINE Alu -13 298 1 1293 165 23 55 chr1 101223103 101223262 -141441091 - Charlie1a DNA MER1_type -1579 1182 1036 1753 194 0 3 chr1 101223262 101223572 -141440781 - AluJo SINE Alu -3 309 1 1293 165 23 55 chr1 101223572 101223721 -141440632 - Charlie1a DNA MER1_type -1725 1036 884 2579 205 55 2 chr1 101223747 101224309 -141440044 + L1MD3 LINE L1 7404 7995 0 2096 114 7 39 chr1 101224320 101224628 -141439725 + AluSx SINE Alu 1 298 -14 2712 184 158 52 chr1 101224628 101224963 -141439390 - Charlie1a DNA MER1_type -1871 890 592 2364 97 0 0 chr1 101224963 101225263 -141439090 - AluSq SINE Alu -13 300 1 2712 184 158 52 chr1 101225263 101225665 -141438688 - Charlie1a DNA MER1_type -2169 592 74 2399 90 0 3 chr1 101225665 101225966 -141438387 + AluSg SINE Alu 1 300 -10 1717 164 26 10 chr1 101225975 101226280 -141438073 + AluJo SINE Alu 1 310 -2 438 235 24 42 chr1 101226325 101226491 -141437862 - L2 LINE L2 -100 3213 3051 199 260 144 0 chr1 101226901 101227005 -141437348 - MIR SINE MIR -27 235 117 180 0 0 0 chr1 101227037 101227057 -141437296 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1413 173 26 97 chr1 101227303 101227684 -141436669 + MLT1A1 LTR MaLR 1 354 -11 350 198 0 33 chr1 101227760 101227851 -141436502 - MIR SINE MIR -56 206 119 404 179 0 12 chr1 101228588 101228672 -141435681 + L1M4 LINE L1 4455 4537 -1609 2527 75 3 0 chr1 101231474 101231782 -141432571 + AluSp SINE Alu 1 309 -4 377 254 215 0 chr1 101232410 101232540 -141431813 + MER5A DNA MER1_type 10 167 -22 22 0 0 0 chr1 101232674 101232696 -141431657 + AT_rich Low_complexity Low_complexity 1 22 0 1165 256 89 11 chr1 101233308 101233912 -141430441 + L2 LINE L2 2646 3313 0 2576 58 7 0 chr1 101233954 101234263 -141430090 + AluY SINE Alu 1 311 0 2068 142 3 3 chr1 101234649 101234952 -141429401 + AluJb SINE Alu 1 303 -9 2057 144 13 0 chr1 101236113 101236412 -141427941 + AluJo SINE Alu 1 303 -9 239 133 22 0 chr1 101236523 101236568 -141427785 + (TG)n Simple_repeat Simple_repeat 2 47 0 1205 89 0 0 chr1 101236715 101236872 -141427481 - AluSq SINE Alu -16 297 141 2037 147 0 10 chr1 101237018 101237325 -141427028 + AluJb SINE Alu 1 304 -8 267 103 0 0 chr1 101237404 101237443 -141426910 + (A)n Simple_repeat Simple_repeat 1 39 0 2048 119 4 89 chr1 101237641 101237875 -141426478 + L1MA8 LINE L1 5736 5908 -383 2009 112 14 4 chr1 101237875 101238153 -141426200 + AluSg SINE Alu 1 281 -29 2048 119 4 89 chr1 101238153 101238340 -141426013 + L1MA8 LINE L1 5908 6109 -182 1113 111 17 0 chr1 101238699 101238880 -141425473 + L1MA8 LINE L1 6096 6279 -12 277 314 29 9 chr1 101238989 101239094 -141425259 + MIR SINE MIR 97 203 -59 212 68 0 91 chr1 101239685 101239729 -141424624 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 2414 57 3 14 chr1 101240211 101240508 -141423845 - AluY SINE Alu -17 294 1 707 216 55 39 chr1 101241023 101241204 -141423149 + MIR SINE MIR 12 195 -67 27 0 0 0 chr1 101241492 101241519 -141422834 + AT_rich Low_complexity Low_complexity 1 27 0 819 188 0 0 chr1 101241799 101241932 -141422421 + FLAM_C SINE Alu 1 133 0 815 280 31 16 chr1 101242099 101242356 -141421997 + MIR SINE MIR 2 262 0 2145 121 16 3 chr1 101242475 101242780 -141421573 + AluSx SINE Alu 1 309 -3 2175 106 3 14 chr1 101242923 101243216 -141421137 + AluSx SINE Alu 9 298 -14 2106 85 57 4 chr1 101243784 101244065 -141420288 + AluSg SINE Alu 1 296 -14 437 241 60 79 chr1 101244200 101244465 -141419888 + MIR SINE MIR 2 261 -1 2024 127 0 0 chr1 101244811 101245094 -141419259 + AluSx SINE Alu 25 307 -5 1690 188 7 0 chr1 101245251 101245533 -141418820 + AluJo SINE Alu 1 284 -28 2484 71 3 0 chr1 101245989 101246284 -141418069 - AluSg SINE Alu -14 296 1 236 229 0 0 chr1 101246823 101246871 -141417482 - L2 LINE L2 -5 3267 3220 21 57 0 0 chr1 101247087 101247122 -141417231 + AT_rich Low_complexity Low_complexity 1 35 0 423 246 149 26 chr1 101247471 101247666 -141416687 + MIR SINE MIR 44 262 0 2286 122 0 0 chr1 101249051 101249363 -141414990 + AluSx SINE Alu 1 312 0 505 32 0 0 chr1 101249373 101249436 -141414917 + MER41B LTR ERV1 485 547 -88 859 56 0 92 chr1 101249450 101249592 -141414761 + L1PA6 LINE L1 6023 6151 -3 2610 56 0 0 chr1 101249759 101250063 -141414290 + AluY SINE Alu 1 304 -7 459 216 81 9 chr1 101250566 101250677 -141413676 - L2 LINE L2 -8 3305 3187 182 278 21 62 chr1 101250757 101250854 -141413499 - L2 LINE L2 -71 3242 3150 331 321 62 6 chr1 101251002 101251164 -141413189 - L2 LINE L2 -569 2745 2575 314 233 29 48 chr1 101251165 101251268 -141413085 + MIR SINE MIR 117 217 -45 267 227 171 11 chr1 101251886 101251974 -141412379 + MIR SINE MIR 50 151 -111 2125 141 3 0 chr1 101252041 101252345 -141412008 - AluSx SINE Alu -7 305 1 385 188 0 0 chr1 101252915 101252979 -141411374 + AluJb SINE Alu 87 150 -152 270 335 73 26 chr1 101253111 101253302 -141411051 + L2 LINE L2 2871 3070 -202 2169 129 3 0 chr1 101253510 101253813 -141410540 + AluSx SINE Alu 1 304 -8 341 320 0 0 chr1 101254499 101254602 -141409751 - MIR3 SINE MIR -48 160 58 424 276 32 54 chr1 101254753 101254842 -141409511 - MIR SINE MIR -70 192 103 1510 146 16 96 chr1 101254842 101254981 -141409372 + AluJo SINE Alu 1 101 -211 189 0 0 0 chr1 101254981 101255002 -141409351 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1510 146 16 96 chr1 101255002 101255184 -141409169 + AluJo SINE Alu 101 296 -16 424 276 32 54 chr1 101255184 101255279 -141409074 - MIR SINE MIR -159 103 12 1306 259 69 2 chr1 101255486 101255879 -141408474 - L2 LINE L2 0 3313 2895 615 284 91 12 chr1 101255882 101256125 -141408228 + MIR SINE MIR 1 262 0 1512 197 3 28 chr1 101257109 101257398 -141406955 - AluJo SINE Alu -30 282 1 1933 112 9 56 chr1 101257407 101257729 -141406624 - AluSq SINE Alu -6 307 1 2195 119 0 10 chr1 101257793 101258096 -141406257 + AluSx SINE Alu 1 300 -12 1023 265 97 40 chr1 101258111 101258656 -141405697 - L2 LINE L2 -2 3311 2740 2140 79 15 0 chr1 101258656 101258921 -141405432 - AluSg SINE Alu -41 269 1 1023 265 97 40 chr1 101258921 101259026 -141405327 - L2 LINE L2 -573 2740 2642 233 235 20 0 chr1 101259628 101259679 -141404674 + GA-rich Low_complexity Low_complexity 1 52 0 2217 105 0 60 chr1 101259734 101260066 -141404287 + AluSx SINE Alu 1 312 0 1139 118 7 0 chr1 101261474 101261627 -141402726 - AluJb SINE Alu -30 282 129 2168 121 0 0 chr1 101263118 101263408 -141400945 + AluSx SINE Alu 4 293 -19 21 71 0 0 chr1 101264405 101264447 -141399906 + AT_rich Low_complexity Low_complexity 1 42 0 2497 62 7 0 chr1 101264447 101264752 -141399601 + AluY SINE Alu 1 307 -4 811 165 23 0 chr1 101264860 101264993 -141399360 + AluJo SINE Alu 1 136 -176 213 196 54 11 chr1 101264993 101265085 -141399268 + (TA)n Simple_repeat Simple_repeat 1 96 0 2122 109 0 0 chr1 101265886 101266201 -141398152 + AluY SINE Alu 1 315 0 2051 122 17 0 chr1 101267894 101268182 -141396171 - AluSx SINE Alu -19 293 1 268 171 50 31 chr1 101268387 101268471 -141395882 - MER4D LTR ERV1 -635 87 1 29 60 0 0 chr1 101268491 101268541 -141395812 + AT_rich Low_complexity Low_complexity 1 50 0 479 128 39 0 chr1 101268550 101268628 -141395725 + AluJ/FLAM SINE Alu 2 82 -230 251 279 0 0 chr1 101268633 101268701 -141395652 + L2 LINE L2 1332 1399 -1915 745 266 150 39 chr1 101268807 101269236 -141395117 + L2 LINE L2 1682 2168 -1146 2256 84 0 7 chr1 101269236 101269520 -141394833 - AluSc SINE Alu -27 282 1 745 266 150 39 chr1 101269520 101269556 -141394797 + L2 LINE L2 2168 2199 -1115 2419 155 31 3 chr1 101269556 101269937 -141394416 + MSTA LTR MaLR 3 394 -34 773 173 8 8 chr1 101269937 101270070 -141394283 - FLAM_C SINE Alu -9 134 2 844 286 129 14 chr1 101270092 101270512 -141393841 + L2 LINE L2 2194 2661 -653 379 318 9 0 chr1 101270619 101270726 -141393627 + L2 LINE L2 3145 3252 -20 22 56 0 0 chr1 101271397 101271433 -141392920 + AT_rich Low_complexity Low_complexity 1 36 0 231 269 111 9 chr1 101272226 101272334 -141392019 - L1ME4a LINE L1 -34 6087 5969 822 109 0 90 chr1 101272356 101272512 -141391841 + FLAM_C SINE Alu 1 142 -1 2477 62 3 7 chr1 101272879 101273187 -141391166 - AluY SINE Alu -4 307 1 238 140 20 40 chr1 101273224 101273274 -141391079 + Alu SINE Alu 116 164 -139 971 121 66 0 chr1 101273521 101273687 -141390666 + L1MA7 LINE L1 6063 6239 -52 1555 171 62 7 chr1 101273687 101273961 -141390392 + AluJb SINE Alu 1 289 -23 947 179 30 0 chr1 101274258 101274426 -141389927 + FAM SINE Alu 1 173 -2 2177 122 3 0 chr1 101274569 101274864 -141389489 - AluSx SINE Alu -16 296 1 632 242 0 0 chr1 101275348 101275468 -141388885 - FLAM_A SINE Alu -14 128 9 814 158 1 45 chr1 101275479 101275643 -141388710 - L1ME4a LINE L1 -550 5621 5469 1570 158 8 12 chr1 101276097 101276356 -141387997 + AluJo SINE Alu 14 271 -41 22 35 0 0 chr1 101276469 101276498 -141387855 + AT_rich Low_complexity Low_complexity 1 29 0 1848 146 17 23 chr1 101276706 101276723 -141387630 - AluJo SINE Alu -13 299 283 252 0 0 0 chr1 101276723 101276751 -141387602 + (TG)n Simple_repeat Simple_repeat 1 28 0 1848 146 17 23 chr1 101276751 101277034 -141387319 - AluJo SINE Alu -29 283 1 210 118 0 0 chr1 101277042 101277076 -141387277 + (T)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr1 101277477 101277498 -141386855 + AT_rich Low_complexity Low_complexity 1 21 0 2072 126 6 28 chr1 101277501 101277818 -141386535 + AluSx SINE Alu 1 310 -2 1169 180 54 18 chr1 101277914 101278136 -141386217 + AluJo SINE Alu 1 230 -82 2031 105 7 34 chr1 101278343 101278639 -141385714 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr1 101278740 101278762 -141385591 + (T)n Simple_repeat Simple_repeat 1 22 0 2096 114 31 14 chr1 101278860 101279015 -141385338 - AluSg SINE Alu -15 295 131 2342 99 0 3 chr1 101279015 101279317 -141385036 - AluSq SINE Alu -12 301 1 2096 114 31 14 chr1 101279317 101279451 -141384902 - AluSg SINE Alu -179 131 1 300 223 100 15 chr1 101279451 101279581 -141384772 + MIR SINE MIR 122 262 0 1376 114 0 10 chr1 101279876 101280078 -141384275 - AluSg/x SINE Alu -5 307 108 1631 133 4 17 chr1 101280205 101280439 -141383914 - AluSx SINE Alu -81 231 1 1994 138 21 0 chr1 101280666 101280956 -141383397 + AluSx SINE Alu 1 296 -16 1753 232 133 70 chr1 101281171 101281795 -141382558 + MER21B LTR ERV1 1 681 -182 2519 72 0 0 chr1 101281795 101282100 -141382253 - AluSg SINE Alu -5 305 1 1753 232 133 70 chr1 101282100 101282222 -141382131 + MER21B LTR ERV1 681 794 -69 809 175 0 21 chr1 101282414 101282557 -141381796 - AluJo SINE Alu -162 150 11 606 183 14 78 chr1 101282573 101282715 -141381638 - MER21B LTR ERV1 -635 228 96 492 264 10 16 chr1 101282685 101282844 -141381509 - MER21B LTR ERV1 -407 198 1 * 1656 131 97 0 chr1 101282849 101283139 -141381214 - Tigger7 DNA MER2_type 0 2487 2170 804 244 6 0 chr1 101283137 101283305 -141381048 - Tigger7 DNA MER2_type -2318 169 1 * 2074 108 4 0 chr1 101283376 101283690 -141380663 - AluSg SINE Alu 0 317 3 1569 127 115 20 chr1 101283823 101284075 -141380278 - AluJb SINE Alu -19 293 18 687 179 0 66 chr1 101284109 101284260 -141380093 + FLAM_C SINE Alu 2 142 -1 2129 116 17 0 chr1 101284300 101284594 -141379759 + AluSx SINE Alu 1 299 -13 2478 56 0 17 chr1 101284594 101284896 -141379457 + AluY SINE Alu 1 297 -14 314 180 140 10 chr1 101284897 101284997 -141379356 + L1ME LINE L1 2988 3100 -3046 1854 150 133 48 chr1 101284997 101285397 -141378956 + Tigger2a DNA MER2_type 1 434 0 437 228 40 0 chr1 101285402 101285503 -141378850 + L1ME LINE L1 5524 5628 -538 25 31 0 0 chr1 101286190 101286222 -141378131 + GC_rich Low_complexity Low_complexity 1 32 0 284 0 0 27 chr1 101286682 101286719 -141377634 + (TG)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr1 101286718 101286742 -141377611 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 250 189 19 160 chr1 101287397 101287503 -141376850 + MIR SINE MIR 167 257 -5 337 281 89 37 chr1 101287714 101287849 -141376504 + MIR3 SINE MIR 3 144 -64 1348 163 194 3 chr1 101288872 101289160 -141375193 - MSTD LTR MaLR -2 394 52 1735 194 11 0 chr1 101289163 101289447 -141374906 - AluJo SINE Alu -25 287 1 23 0 0 0 chr1 101289560 101289583 -141374770 + AT_rich Low_complexity Low_complexity 1 23 0 832 204 22 22 chr1 101289911 101290092 -141374261 - MLT1A1 LTR MaLR 0 365 185 272 149 85 0 chr1 101290102 101290149 -141374204 - MLT1A1 LTR MaLR -314 51 1 189 0 0 0 chr1 101290230 101290251 -141374102 + (T)n Simple_repeat Simple_repeat 1 21 0 2145 60 0 30 chr1 101290284 101290553 -141373800 + AluY SINE Alu 42 302 -9 2066 130 17 17 chr1 101290874 101291175 -141373178 - AluSx SINE Alu -11 301 1 459 174 33 0 chr1 101291852 101291944 -141372409 + MER21B LTR ERV1 405 499 -364 208 156 0 0 chr1 101291944 101291976 -141372377 + A-rich Low_complexity Low_complexity 1 32 0 466 188 230 24 chr1 101291992 101292157 -141372196 + MLT1C LTR MaLR 269 467 0 526 306 71 20 chr1 101292160 101292415 -141371938 - L2 LINE L2 -838 2476 2209 1313 130 126 72 chr1 101292438 101292570 -141371783 - AluJo SINE Alu -18 294 171 2235 94 16 10 chr1 101292570 101292877 -141371476 - AluSg1 SINE Alu 0 309 1 1313 130 126 72 chr1 101292877 101293021 -141371332 - AluJo SINE Alu -141 171 3 814 160 0 8 chr1 101293035 101293160 -141371193 - FLAM_C SINE Alu -9 124 1 2054 132 3 0 chr1 101293503 101293790 -141370563 - AluSx SINE Alu -20 292 5 199 320 120 16 chr1 101294556 101294681 -141369672 + L2 LINE L2 3134 3271 -1 947 151 0 0 chr1 101295843 101295989 -141368364 - AluSg/x SINE Alu -13 299 154 2376 82 7 0 chr1 101296100 101296391 -141367962 - AluSc SINE Alu -16 293 1 815 129 32 0 chr1 101296507 101296631 -141367722 - AluJb SINE Alu -15 297 170 877 134 0 0 chr1 101296631 101296750 -141367603 + FAM SINE Alu 22 140 -45 1071 264 7 20 chr1 101296752 101297047 -141367306 + AluJb SINE Alu 2 292 -10 235 51 26 26 chr1 101297190 101297229 -141367124 - Alu SINE Alu -263 39 1 299 233 0 0 chr1 101297288 101297348 -141367005 - MLT1K LTR MaLR -8 580 521 283 276 32 144 chr1 101297374 101297558 -141366795 - MLT1K LTR MaLR -179 409 259 2145 72 36 11 chr1 101297558 101297678 -141366675 + AluSc SINE Alu 1 117 -192 207 0 0 0 chr1 101297678 101297701 -141366652 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2145 72 36 11 chr1 101297701 101297859 -141366494 + AluSc SINE Alu 117 286 -23 283 276 32 144 chr1 101297859 101297924 -141366429 - MLT1K LTR MaLR -329 259 188 1555 91 21 12 chr1 101298644 101298886 -141365467 + L1MA2 LINE L1 6061 6304 0 2342 104 3 0 chr1 101298945 101299243 -141365110 + AluSx SINE Alu 1 299 -13 2213 96 10 3 chr1 101299333 101299624 -141364729 + AluSp SINE Alu 2 294 -19 2111 146 0 0 chr1 101299983 101300291 -141364062 + AluSx SINE Alu 1 308 -4 27 62 0 0 chr1 101300445 101300493 -141363860 + AT_rich Low_complexity Low_complexity 1 48 0 2114 99 3 7 chr1 101300751 101301034 -141363319 - AluSp SINE Alu -4 309 28 2435 76 0 7 chr1 101301140 101301442 -141362911 + AluSp SINE Alu 1 300 -13 2282 110 0 0 chr1 101301455 101301756 -141362597 + AluSq SINE Alu 9 309 -4 3868 161 43 14 chr1 101301757 101302452 -141361901 - MER21A-int LTR ERV1 -636 3555 2841 * 5089 188 87 41 chr1 101302449 101302672 -141361681 - MER21A-int LTR ERV1 -1802 2389 2178 1964 123 13 3 chr1 101302672 101302974 -141361379 + AluY SINE Alu 1 305 -6 5089 188 87 41 chr1 101302974 101302988 -141361365 - MER21A-int LTR ERV1 -2013 2178 2166 903 133 16 0 chr1 101302988 101303116 -141361237 + FLAM_C SINE Alu 1 130 -3 5089 188 87 41 chr1 101303116 101303262 -141361091 - MER21A-int LTR ERV1 -2025 2166 2028 2214 93 17 0 chr1 101303262 101303553 -141360800 - AluSq SINE Alu -17 296 1 5089 188 87 41 chr1 101303553 101303809 -141360544 - MER21A-int LTR ERV1 -2163 2028 1785 1771 164 25 0 chr1 101303809 101304095 -141360258 + AluSx SINE Alu 2 294 -18 5089 188 87 41 chr1 101304095 101304573 -141359780 - MER21A-int LTR ERV1 -2406 1785 1218 258 32 0 0 chr1 101304573 101304604 -141359749 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 1239 178 4 9 chr1 101304619 101304844 -141359509 - AluJo SINE Alu -2 310 87 4755 156 66 17 chr1 101304860 101304923 -141359430 - MER21A-int LTR ERV1 -2532 4226 4168 2246 105 3 3 chr1 101304923 101305219 -141359134 + AluSx SINE Alu 1 296 -16 4755 156 66 17 chr1 101305219 101305637 -141358716 - MER21A-int LTR ERV1 -2590 4168 3772 2757 23 3 0 chr1 101305637 101305946 -141358407 - AluY SINE Alu -1 310 1 4755 156 66 17 chr1 101305946 101306363 -141357990 - MER21A-int LTR ERV1 -2986 3772 3283 1369 128 5 0 chr1 101306355 101306551 -141357802 - MER21A-int LTR ERV1 -3994 197 1 * 2805 129 65 40 chr1 101306551 101307055 -141357298 - MER21A LTR ERV1 0 931 415 397 234 58 44 chr1 101307056 101307193 -141357160 - MLT1C LTR MaLR -219 248 110 1668 176 0 14 chr1 101307195 101307484 -141356869 - AluSg SINE Alu -7 303 19 290 268 307 17 chr1 101307656 101307887 -141356466 + L2 LINE L2 2244 2541 -773 212 175 0 0 chr1 101307924 101307964 -141356389 + A-rich Low_complexity Low_complexity 1 40 0 2131 138 0 7 chr1 101308041 101308346 -141356007 + AluSx SINE Alu 1 303 -9 245 363 18 42 chr1 101308643 101308811 -141355542 - L2 LINE L2 -443 2871 2708 2180 93 0 42 chr1 101308813 101309123 -141355230 - AluSg SINE Alu -13 297 1 785 201 50 0 chr1 101309161 101309300 -141355053 + FRAM SINE Alu 8 153 -23 361 226 10 39 chr1 101309531 101309633 -141354720 - AluJb SINE Alu -192 110 12 2176 95 0 3 chr1 101311305 101311588 -141352765 + AluSx SINE Alu 1 282 -30 196 336 87 20 chr1 101311630 101311779 -141352574 - L2 LINE L2 -182 3090 2932 216 0 0 0 chr1 101311823 101311847 -141352506 + (T)n Simple_repeat Simple_repeat 1 24 0 2054 95 11 11 chr1 101311893 101312177 -141352176 + AluSx SINE Alu 12 295 -17 527 207 112 0 chr1 101312182 101312298 -141352055 - FAM SINE Alu -35 150 22 1871 63 94 12 chr1 101312653 101312907 -141351446 + AluSg SINE Alu 1 275 -35 1141 191 164 12 chr1 101312918 101313174 -141351179 + AluJo SINE Alu 6 300 -12 207 241 0 108 chr1 101313186 101313269 -141351084 + L2 LINE L2 3199 3272 0 369 295 77 29 chr1 101313282 101313489 -141350864 - L2 LINE L2 -1283 2031 1815 798 164 8 22 chr1 101313803 101313937 -141350416 + FLAM_C SINE Alu 7 138 -5 1420 43 0 0 chr1 101314090 101314253 -141350100 - L1PA5 LINE L1 0 6154 5992 1942 124 0 0 chr1 101314536 101314802 -141349551 + AluSx SINE Alu 1 266 -46 2005 148 0 25 chr1 101315063 101315097 -141349256 - AluSx SINE Alu -1 311 278 181 0 69 0 chr1 101315097 101315126 -141349227 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2005 148 0 25 chr1 101315126 101315409 -141348944 - AluSx SINE Alu -34 278 2 1916 166 0 0 chr1 101315410 101315711 -141348642 - AluJb SINE Alu -4 308 8 1915 129 7 23 chr1 101315812 101316114 -141348239 + AluJb SINE Alu 1 297 -15 2065 125 13 7 chr1 101316314 101316619 -141347734 + AluSx SINE Alu 3 309 -3 251 169 289 0 chr1 101317087 101317170 -141347183 - L1MC4 LINE L1 -8 8034 7928 831 203 126 6 chr1 101317558 101317740 -141346613 + MER3 DNA MER1_type 2 205 -4 1483 172 29 55 chr1 101317797 101318105 -141346248 + AluJo SINE Alu 6 305 -7 282 103 0 0 chr1 101318350 101318389 -141345964 + Alu SINE Alu 1 39 -269 297 349 0 8 chr1 101318511 101318640 -141345713 - L1MC4 LINE L1 -570 7472 7345 703 219 64 78 chr1 101318673 101319111 -141345242 - L1MC5 LINE L1 -728 7233 6737 1171 323 101 38 chr1 101319846 101320895 -141343458 - L2 LINE L2 0 3272 2150 1449 242 85 64 chr1 101320905 101321207 -141343146 + L1MEd LINE L1 421 715 -5404 2316 90 3 0 chr1 101321207 101321496 -141342857 + AluSx SINE Alu 13 302 -10 1449 242 85 64 chr1 101321496 101321867 -141342486 + L1MEd LINE L1 715 1108 -5011 272 248 60 34 chr1 101322119 101322236 -141342117 + L1MEd LINE L1 2153 2272 -3857 267 114 0 0 chr1 101322876 101322920 -141341433 + (GA)n Simple_repeat Simple_repeat 2 45 0 1505 261 92 28 chr1 101323290 101323534 -141340819 + L1MEd LINE L1 2420 2647 -3482 983 118 0 15 chr1 101323534 101323669 -141340684 - FLAM_C SINE Alu 0 133 1 1505 261 92 28 chr1 101323669 101324394 -141339959 + L1MEd LINE L1 2647 3451 -2678 2255 97 3 3 chr1 101324490 101324788 -141339565 - AluSx SINE Alu -14 298 1 2117 133 0 3 chr1 101324788 101325096 -141339257 - AluSx SINE Alu -5 307 1 2232 236 48 14 chr1 101325226 101325870 -141338483 - L1M4 LINE L1 -1140 5006 4341 993 35 0 0 chr1 101325918 101326033 -141338320 + AluY SINE Alu 192 306 -5 297 269 128 0 chr1 101326648 101326726 -141337627 + L2 LINE L2 3224 3311 -2 586 155 0 21 chr1 101326735 101326832 -141337521 + FRAM SINE Alu 70 164 -12 657 237 0 8 chr1 101326838 101326956 -141337397 + FLAM_C SINE Alu 1 117 -16 32 0 0 0 chr1 101327140 101327172 -141337181 + AT_rich Low_complexity Low_complexity 1 32 0 1890 115 52 0 chr1 101329784 101330092 -141334261 - AluSx SINE Alu 0 322 1 2123 103 3 32 chr1 101330345 101330514 -141333839 - AluSq SINE Alu -10 303 146 2443 71 0 0 chr1 101330514 101330808 -141333545 - AluY SINE Alu -17 294 1 2123 103 3 32 chr1 101330808 101330950 -141333403 - AluSq SINE Alu -167 146 1 29 70 0 0 chr1 101331333 101331390 -141332963 + AT_rich Low_complexity Low_complexity 1 57 0 1427 196 25 18 chr1 101331464 101331740 -141332613 + AluJo SINE Alu 27 304 -8 1431 239 15 56 chr1 101332185 101332575 -141331778 - MLT1A2 LTR MaLR 0 374 1 517 135 0 34 chr1 101332580 101332669 -141331684 - AluJ/FRAM SINE Alu -1 311 226 * 632 161 0 0 chr1 101332664 101332751 -141331602 + AluJo/FRAM SINE Alu 204 290 -22 22 0 0 54 chr1 101332751 101332770 -141331583 + AT_rich Low_complexity Low_complexity 1 19 -16 384 119 0 0 chr1 101332770 101332829 -141331524 + (CA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 54 chr1 101332829 101332846 -141331507 + AT_rich Low_complexity Low_complexity 19 35 0 2160 123 0 16 chr1 101332924 101333234 -141331119 - AluSx SINE Alu -7 305 1 2349 94 0 0 chr1 101333672 101333970 -141330383 + AluSx SINE Alu 1 298 -14 1245 188 0 5 chr1 101334032 101334240 -141330113 - AluJb SINE Alu -105 207 1 2549 54 0 0 chr1 101335919 101336216 -141328137 + AluY SINE Alu 1 297 -14 504 311 119 28 chr1 101336488 101336936 -141327417 + L2 LINE L2 2698 3206 -107 201 39 0 0 chr1 101337102 101337128 -141327225 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2294 91 17 0 chr1 101337128 101337417 -141326936 - AluSp SINE Alu -16 297 1 1489 113 14 0 chr1 101337420 101337632 -141326721 - AluSg/x SINE Alu -14 298 84 185 208 42 0 chr1 101338332 101338380 -141325973 + L2 LINE L2 3263 3312 -1 189 107 0 0 chr1 101338565 101338593 -141325760 + (T)n Simple_repeat Simple_repeat 1 28 0 224 359 116 45 chr1 101338792 101338926 -141325427 - L2 LINE L2 -45 3227 3104 700 256 124 17 chr1 101338926 101339160 -141325193 + MIR SINE MIR 4 262 0 224 359 116 45 chr1 101339160 101339767 -141324586 - L2 LINE L2 -168 3104 2424 1522 103 63 62 chr1 101339899 101340059 -141324294 - Tigger4(Zombi) DNA MER2_type 0 2731 2573 2101 183 59 16 chr1 101340059 101340501 -141323852 - MER65C LTR ERV1 0 461 1 1522 103 63 62 chr1 101340501 101340674 -141323679 - Tigger4(Zombi) DNA MER2_type -158 2573 1 24 0 0 0 chr1 101341672 101341696 -141322657 + AT_rich Low_complexity Low_complexity 1 24 0 2210 90 0 71 chr1 101342037 101342359 -141321994 + AluSc SINE Alu 1 299 -10 763 125 15 44 chr1 101342371 101342507 -141321846 + FLAM_C SINE Alu 2 133 0 24 32 0 0 chr1 101343529 101343560 -141320793 + AT_rich Low_complexity Low_complexity 1 31 0 389 188 31 0 chr1 101344014 101344110 -141320243 + L1ME4a LINE L1 6021 6119 -2 23 0 0 0 chr1 101345637 101345660 -141318693 + AT_rich Low_complexity Low_complexity 1 23 0 2212 108 0 3 chr1 101345710 101346042 -141318311 - AluSq SINE Alu 0 313 1 27 73 0 0 chr1 101346132 101346187 -141318166 + AT_rich Low_complexity Low_complexity 1 55 0 2320 101 0 3 chr1 101346197 101346504 -141317849 - AluSx SINE Alu -6 306 1 910 186 0 33 chr1 101347151 101347334 -141317019 + AluSq SINE Alu 117 293 -20 830 159 0 16 chr1 101347336 101347462 -141316891 - AluJo/FLAM SINE Alu -187 125 2 384 252 39 51 chr1 101347463 101347743 -141316610 - L1M4 LINE L1 -987 5159 4869 548 274 79 34 chr1 101347966 101348219 -141316134 - L1M4 LINE L1 -1393 4753 4478 2486 52 0 13 chr1 101348219 101348525 -141315828 - AluY SINE Alu -9 302 1 548 274 79 34 chr1 101348525 101348625 -141315728 - L1M4 LINE L1 -1668 4478 4384 1001 161 6 0 chr1 101348632 101348793 -141315560 + AluJb SINE Alu 136 297 -15 536 244 97 83 chr1 101348794 101348876 -141315477 - L1ME LINE L1 -667 5497 5418 780 142 0 64 chr1 101348876 101349017 -141315336 - FLAM_C SINE Alu 0 133 2 536 244 97 83 chr1 101349017 101349306 -141315047 - L1ME LINE L1 -746 5418 5129 1063 167 45 20 chr1 101349553 101349751 -141314602 - MER3 DNA MER1_type 0 209 7 2288 101 0 16 chr1 101349810 101350116 -141314237 - AluSc SINE Alu -8 301 1 1236 137 18 32 chr1 101350124 101350343 -141314010 - AluJo SINE Alu -2 310 95 1757 186 17 77 chr1 101350451 101350714 -141313639 - MLT1B LTR MaLR 0 390 113 1842 172 0 7 chr1 101350714 101351016 -141313337 + AluJo SINE Alu 5 304 -8 1757 186 17 77 chr1 101351016 101351080 -141313273 - MLT1B LTR MaLR -277 113 91 2150 139 33 12 chr1 101351080 101351417 -141312936 - MER2 DNA MER2_type 0 344 1 1757 186 17 77 chr1 101351417 101351503 -141312850 - MLT1B LTR MaLR -299 91 1 455 216 37 15 chr1 101351519 101351653 -141312700 - L1ME LINE L1 -2171 3975 3839 2356 85 3 3 chr1 101351951 101352257 -141312096 + AluSg SINE Alu 1 306 -4 1068 136 6 6 chr1 101352262 101352424 -141311929 + FRAM SINE Alu 1 162 -14 1003 221 85 50 chr1 101352495 101352587 -141311766 + MLT1C LTR MaLR 1 88 -379 1948 144 7 3 chr1 101352587 101352885 -141311468 + AluSx SINE Alu 1 299 -13 1003 221 85 50 chr1 101352885 101352980 -141311373 + MLT1C LTR MaLR 88 178 -289 1556 182 54 0 chr1 101352980 101353260 -141311093 + AluJb SINE Alu 1 295 -17 1003 221 85 50 chr1 101353260 101353388 -141310965 + MLT1C LTR MaLR 178 328 -139 2515 166 46 46 chr1 101353425 101353949 -141310404 + Tigger7 DNA MER2_type 3 526 -1961 386 169 130 0 chr1 101353985 101354062 -141310291 + Tigger7 DNA MER2_type 2501 2587 0 441 198 0 11 chr1 101354066 101354157 -141310196 + MLT1C LTR MaLR 378 467 0 2215 89 4 0 chr1 101354191 101354471 -141309882 + AluSp SINE Alu 1 281 -32 468 0 0 0 chr1 101354471 101354523 -141309830 + (TAAAA)n Simple_repeat Simple_repeat 1 52 0 331 170 0 0 chr1 101354523 101354588 -141309765 + FRAM/FAM SINE Alu 30 85 -90 294 195 26 13 chr1 101354598 101354675 -141309678 + MER21-int LTR ERV1 3293 3370 -821 2221 89 0 13 chr1 101354959 101355263 -141309090 + AluSx SINE Alu 1 300 -12 813 130 6 111 chr1 101355439 101355500 -141308853 + 7SLRNA srpRNA srpRNA 152 218 -102 1915 140 4 0 chr1 101355500 101355779 -141308574 + AluSx SINE Alu 1 280 -32 194 0 0 37 chr1 101355779 101355806 -141308547 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 813 130 6 111 chr1 101355806 101355905 -141308448 + 7SLRNA srpRNA srpRNA 216 296 -24 540 0 0 0 chr1 101355909 101355969 -141308384 + (TA)n Simple_repeat Simple_repeat 2 61 0 2041 126 10 0 chr1 101356182 101356476 -141307877 + AluJb SINE Alu 1 297 -15 2045 128 13 7 chr1 101356676 101356981 -141307372 + AluSx SINE Alu 3 309 -3 719 150 116 7 chr1 101357919 101358066 -141306287 + MER3 DNA MER1_type 2 164 -45 1500 169 29 55 chr1 101358158 101358466 -141305887 + AluJo SINE Alu 6 305 -7 2433 65 0 0 chr1 101358711 101359005 -141305348 + AluY SINE Alu 1 294 -17 1272 170 188 19 chr1 101359006 101359328 -141305025 - L1MC1 LINE L1 -13 6320 6054 1749 153 19 25 chr1 101359328 101359642 -141304711 - AluSx SINE Alu 0 312 1 1272 170 188 19 chr1 101359642 101359714 -141304639 - L1MC1 LINE L1 -279 6054 5996 2030 153 3 0 chr1 101359714 101360015 -141304338 - AluSx SINE Alu -10 302 1 1272 170 188 19 chr1 101360015 101360174 -141304179 - L1MC1 LINE L1 -337 5996 5673 1539 194 35 3 chr1 101360273 101360562 -141303791 + AluJo SINE Alu 1 298 -14 477 137 0 0 chr1 101360619 101360692 -141303661 + AluS SINE Alu 226 298 -14 242 178 0 0 chr1 101360810 101360855 -141303498 + HsTC2 DNA Tc2 1441 1485 -413 455 130 0 0 chr1 101360915 101360992 -141303361 - FLAM_A SINE Alu 0 142 66 1830 159 0 7 chr1 101360992 101361282 -141303071 - AluJb SINE Alu -24 288 1 426 254 139 85 chr1 101361376 101361504 -141302849 - MER5B DNA MER1_type -1 177 37 3476 164 40 14 chr1 101361504 101362209 -141302144 + L1MB2 LINE L1 5448 6170 -1 426 254 139 85 chr1 101362209 101362245 -141302108 - MER5B DNA MER1_type -141 37 4 2226 131 0 0 chr1 101362528 101362840 -141301513 + AluSx SINE Alu 1 312 0 1840 153 7 3 chr1 101362847 101363129 -141301224 + AluSx SINE Alu 1 283 -29 2203 80 40 3 chr1 101363375 101363675 -141300678 + AluY SINE Alu 1 311 0 2068 142 0 0 chr1 101363845 101364134 -141300219 - AluSq SINE Alu -24 289 1 2177 92 34 0 chr1 101364542 101364837 -141299516 + AluSp SINE Alu 1 305 -8 1691 148 13 46 chr1 101365381 101365549 -141298804 - AluSx SINE Alu -19 293 138 2231 122 0 0 chr1 101365549 101365861 -141298492 - AluSx SINE Alu 0 312 1 1691 148 13 46 chr1 101365861 101365995 -141298358 - AluSx SINE Alu -174 138 1 234 0 0 0 chr1 101366379 101366405 -141297948 + (TG)n Simple_repeat Simple_repeat 2 27 0 2167 102 3 16 chr1 101366411 101366714 -141297639 - AluSx SINE Alu -13 299 1 2217 102 3 0 chr1 101367068 101367362 -141296991 + AluSc SINE Alu 1 295 -14 262 65 0 43 chr1 101367362 101367408 -141296945 - MER4B-int LTR ERV1 -2590 4168 4125 444 84 0 0 chr1 101367519 101367590 -141296763 - Alu SINE Alu 0 309 239 691 202 16 0 chr1 101367907 101368031 -141296322 - FLAM_A SINE Alu -7 126 1 2080 109 0 0 chr1 101368291 101368567 -141295786 + AluSg SINE Alu 3 278 -32 377 307 177 22 chr1 101368968 101369336 -141295017 - L2 LINE L2 -582 2732 2308 1757 118 69 0 chr1 101369445 101369707 -141294646 - AluJb SINE Alu -9 303 24 1807 139 10 26 chr1 101369841 101370144 -141294209 - AluJb SINE Alu -14 298 1 337 229 29 0 chr1 101370204 101370261 -141294092 + 5S rRNA rRNA 1 59 -62 225 171 0 0 chr1 101370261 101370296 -141294057 + Alu SINE Alu 1 35 -265 * 255 212 0 24 chr1 101370290 101370351 -141294002 - AluYb8 SINE Alu -123 185 135 272 323 93 31 chr1 101370411 101370637 -141293716 - L2 LINE L2 -1320 1994 1755 193 217 22 0 chr1 101371056 101371102 -141293251 - L2 LINE L2 -957 2357 2311 1573 150 41 24 chr1 101371520 101371814 -141292539 - AluJb SINE Alu -13 299 1 198 167 0 0 chr1 101372159 101372195 -141292158 + (TA)n Simple_repeat Simple_repeat 2 37 0 529 257 70 18 chr1 101372208 101372446 -141291907 + MER57B LTR ERV1 1 251 -159 430 255 11 0 chr1 101372446 101372540 -141291813 + MER2 DNA MER2_type 1 95 -250 574 138 11 0 chr1 101372541 101372628 -141291725 + AluSx SINE Alu 1 88 -225 3532 174 90 28 chr1 101372628 101373406 -141290947 - LTR1B LTR ERV1 0 826 1 1614 92 0 35 chr1 101373407 101373634 -141290719 + AluSx SINE Alu 86 304 -8 1973 139 0 4 chr1 101373634 101373914 -141290439 + AluSx SINE Alu 1 279 -33 1201 126 49 0 chr1 101373933 101374156 -141290197 + L1 LINE L1 4416 4649 -1497 69 11 0 11 chr1 101374156 101374185 -141290168 + AT_rich Low_complexity Low_complexity 1 29 -57 1931 130 14 3 chr1 101374185 101374470 -141289883 - AluSx SINE Alu -24 288 1 69 11 0 11 chr1 101374470 101374527 -141289826 + AT_rich Low_complexity Low_complexity 29 86 0 698 104 32 8 chr1 101374527 101374652 -141289701 + MER2 DNA MER2_type 83 210 -135 22 0 0 0 chr1 101374690 101374712 -141289641 + AT_rich Low_complexity Low_complexity 1 22 0 334 125 18 0 chr1 101374712 101374768 -141289585 + AluJ/FLAM SINE Alu 1 57 -245 234 207 195 35 chr1 101374882 101374969 -141289384 + L2 LINE L2 3169 3269 -3 1834 147 17 37 chr1 101374985 101375284 -141289069 - AluJo SINE Alu -19 293 1 2225 104 7 3 chr1 101375717 101376016 -141288337 - AluSc SINE Alu -9 300 1 372 276 112 15 chr1 101376614 101376748 -141287605 + MIR SINE MIR 116 262 0 460 288 40 0 chr1 101377245 101377370 -141286983 + MIR3 SINE MIR 58 187 -21 24 0 0 0 chr1 101377448 101377472 -141286881 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr1 101383037 101383071 -141281282 + AT_rich Low_complexity Low_complexity 1 34 0 2293 111 0 0 chr1 101383869 101384167 -141280186 - AluSx SINE Alu -14 298 1 608 186 200 0 chr1 101384343 101384488 -141279865 + FRAM SINE Alu 1 174 -2 29 90 0 0 chr1 101385082 101385160 -141279193 + AT_rich Low_complexity Low_complexity 1 78 0 186 43 0 0 chr1 101385930 101385953 -141278400 + (CTG)n Simple_repeat Simple_repeat 1 23 0 507 361 29 5 chr1 101386632 101386840 -141277513 - MIR SINE MIR -1 261 49 26 0 0 0 chr1 101387000 101387026 -141277327 + AT_rich Low_complexity Low_complexity 1 26 0 2172 131 3 3 chr1 101387306 101387618 -141276735 - AluSx SINE Alu 0 312 1 2562 72 0 0 chr1 101387628 101387932 -141276421 - AluSc SINE Alu -5 304 1 227 325 26 0 chr1 101388298 101388375 -141275978 + MIR SINE MIR 49 127 -81 1449 167 12 12 chr1 101388697 101388937 -141275416 + AluJb SINE Alu 58 297 -15 462 206 86 46 chr1 101388937 101389112 -141275241 - L1MC5 LINE L1 -56 7905 7724 425 239 270 0 chr1 101389282 101389441 -141274912 - MIR SINE MIR -11 251 50 2322 85 3 0 chr1 101389906 101390200 -141274153 + AluSp SINE Alu 1 295 -18 711 171 65 106 chr1 101390687 101390932 -141273421 - L1MB2 LINE L1 -18 6153 5919 2235 108 0 0 chr1 101391026 101391322 -141273031 - AluSq SINE Alu -17 296 1 27 49 0 0 chr1 101392263 101392304 -141272049 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr1 101393531 101393559 -141270794 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr1 101394663 101394697 -141269656 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr1 101394966 101394996 -141269357 + AT_rich Low_complexity Low_complexity 1 30 0 653 58 0 0 chr1 101395457 101395544 -141268809 - L1PA5 LINE L1 0 6154 6068 2305 127 0 0 chr1 101396410 101396718 -141267635 + AluSx SINE Alu 5 312 0 559 206 148 47 chr1 101397189 101397377 -141266976 + MLT1H LTR MaLR 3 251 -298 320 180 31 62 chr1 101397370 101397549 -141266804 + MLT1G1 LTR MaLR 377 590 -2 * 466 291 24 8 chr1 101397763 101397890 -141266463 + L2 LINE L2 3134 3262 -10 1127 169 6 0 chr1 101397991 101398163 -141266190 - FRAM SINE Alu -11 165 1 1702 109 109 0 chr1 101398178 101398434 -141265919 + AluY SINE Alu 1 284 -27 838 158 0 20 chr1 101398442 101398588 -141265765 - L1MC1 LINE L1 -13 6320 6178 1342 251 47 19 chr1 101398604 101399393 -141264960 + L1M4c LINE L1 1969 2788 -3594 829 219 0 48 chr1 101399423 101399610 -141264743 + AluJo SINE Alu 5 182 -130 353 153 0 0 chr1 101399714 101399773 -141264580 - AluJ/FRAM SINE Alu -23 279 221 1982 139 0 4 chr1 101399773 101400053 -141264300 - AluSx SINE Alu -33 279 1 849 163 0 0 chr1 101400061 101400184 -141264169 - FLAM_C SINE Alu -20 123 1 343 159 0 0 chr1 101400714 101400777 -141263576 + LTR30 LTR ERV1 552 614 -108 651 266 93 49 chr1 101400881 101401005 -141263348 - L1MC4a LINE L1 -1789 6019 5902 2627 55 0 3 chr1 101401005 101401316 -141263037 - AluY SINE Alu -1 310 1 651 266 93 49 chr1 101401316 101401579 -141262774 - L1MC4a LINE L1 -1906 5902 5615 293 269 54 40 chr1 101401588 101401737 -141262616 - LTR16C LTR ERVL -2 489 339 363 265 204 8 chr1 101401751 101401883 -141262470 + MER5A DNA MER1_type 31 188 -1 360 343 39 11 chr1 101401895 101402073 -141262280 - LTR16C LTR ERVL -158 333 151 355 209 45 18 chr1 101402427 101402537 -141261816 - MER112 DNA MER1_type -99 161 49 317 343 99 0 chr1 101402609 101402892 -141261461 - L1MC4a LINE L1 -2244 5564 5254 11028 197 57 57 chr1 101403134 101404915 -141259438 + L1MB1 LINE L1 2 1781 -4211 1943 164 0 13 chr1 101404915 101405226 -141259127 + AluJb SINE Alu 4 310 -2 11028 197 57 57 chr1 101405226 101405333 -141259020 + L1MB1 LINE L1 1781 1886 -4106 1635 174 75 0 chr1 101405333 101405598 -141258755 + AluJb SINE Alu 1 285 -27 838 158 0 20 chr1 101405606 101405752 -141258601 - L1MC1 LINE L1 -13 6320 6178 11028 197 57 57 chr1 101405752 101406586 -141257767 + L1MB1 LINE L1 1892 2724 -3268 1440 196 21 32 chr1 101406586 101406895 -141257458 + AluJo SINE Alu 5 310 0 11028 197 57 57 chr1 101406895 101408784 -141255569 + L1MB1 LINE L1 2724 4611 -1381 1130 141 0 0 chr1 101408784 101408940 -141255413 + FRAM SINE Alu 1 155 -21 11028 197 57 57 chr1 101408940 101410095 -141254258 + L1MB1 LINE L1 4611 5494 -498 2666 139 14 9 chr1 101410095 101410519 -141253834 - MSTB LTR MaLR 0 426 1 11028 197 57 57 chr1 101410519 101411018 -141253335 + L1MB1 LINE L1 5494 5991 -1 311 188 58 14 chr1 101412017 101412086 -141252267 - L2 LINE L2 -8 3264 3193 308 313 62 0 chr1 101412266 101412378 -141251975 + MIR SINE MIR 49 167 -95 2266 121 23 28 chr1 101412448 101412838 -141251515 + L1PB2 LINE L1 5761 6148 -3 2151 117 7 3 chr1 101413019 101413318 -141251035 - AluSq SINE Alu -13 300 1 4275 164 41 9 chr1 101413464 101414275 -141250078 + MER6 DNA MER2_type 2 838 -27 2134 221 99 9 chr1 101414321 101414878 -141249475 - MLT2F LTR ERVL -54 609 3 3423 215 69 49 chr1 101414879 101416372 -141247981 - ERVL LTR ERVL -16 5748 4148 301 104 0 0 chr1 101416373 101416421 -141247932 + MLT2F LTR ERVL 613 660 -3 3732 149 11 3 chr1 101417436 101418085 -141246268 + L1MC1 LINE L1 5659 6312 -21 2395 75 0 3 chr1 101418395 101418689 -141245664 - AluSg SINE Alu -17 293 1 2016 124 3 29 chr1 101419124 101419438 -141244915 + AluSx SINE Alu 1 306 -6 333 68 0 0 chr1 101419534 101419578 -141244775 + (TG)n Simple_repeat Simple_repeat 2 45 0 1752 159 42 11 chr1 101419580 101419863 -141244490 - AluJo SINE Alu -20 292 1 284 115 0 58 chr1 101420215 101420267 -141244086 + L1MD3 LINE L1 7730 7778 -217 2107 107 3 3 chr1 101421115 101421431 -141242922 + AluSq SINE Alu 1 316 0 286 316 173 0 chr1 101421445 101421578 -141242775 + MIR3 SINE MIR 53 208 0 240 35 0 0 chr1 101422022 101422051 -141242302 + (TC)n Simple_repeat Simple_repeat 2 30 0 1893 148 33 3 chr1 101422062 101422365 -141241988 - AluJo SINE Alu 0 312 1 732 251 121 52 chr1 101422559 101423037 -141241316 + L2 LINE L2 2715 3253 -60 1732 162 14 28 chr1 101423254 101423538 -141240815 + AluJo SINE Alu 2 281 -31 360 0 0 0 chr1 101423788 101423828 -141240525 + (TG)n Simple_repeat Simple_repeat 1 40 0 2350 58 0 0 chr1 101423828 101424106 -141240247 - AluY SINE Alu -33 278 1 1945 165 3 0 chr1 101424382 101424685 -141239668 - AluJb SINE Alu -8 304 1 204 339 27 5 chr1 101424809 101424902 -141239451 + MIR SINE MIR 9 101 -107 538 72 0 0 chr1 101424909 101424978 -141239375 - AluSq/x SINE Alu -177 135 67 313 235 71 20 chr1 101424978 101425076 -141239277 + MIR SINE MIR 114 216 -46 248 270 40 0 chr1 101425161 101425235 -141239118 + MIR SINE MIR 65 141 -67 506 155 35 0 chr1 101425292 101425408 -141238945 + CT-rich Low_complexity Low_complexity 2 121 0 1242 133 0 51 chr1 101425509 101425705 -141238648 - AluJo SINE Alu -100 212 27 1041 148 0 0 chr1 101426325 101426480 -141237873 + AluSg/x SINE Alu 139 293 -19 180 0 0 0 chr1 101426480 101426500 -141237853 + (TA)n Simple_repeat Simple_repeat 2 21 0 290 254 0 0 chr1 101426500 101426555 -141237798 + MER2 DNA MER2_type 291 345 0 564 236 14 0 chr1 101426558 101426706 -141237647 + MER57A LTR ERV1 250 399 -4 594 188 103 0 chr1 101426922 101427039 -141237314 - AluSq/x SINE Alu -179 133 5 2165 113 20 3 chr1 101427057 101427359 -141236994 - AluSg SINE Alu -3 307 1 925 142 50 123 chr1 101427900 101428119 -141236234 + MLT1C LTR MaLR 185 464 -3 424 252 209 33 chr1 101428524 101428734 -141235619 + MIR SINE MIR 16 262 0 550 132 0 0 chr1 101429452 101429543 -141234810 + L1PA12 LINE L1 5929 6019 -149 1242 136 47 21 chr1 101429779 101430014 -141234339 + MER2 DNA MER2_type 9 249 -96 1045 169 47 33 chr1 101430461 101430674 -141233679 + MER20 DNA MER1_type 2 217 -2 225 266 21 64 chr1 101431031 101431125 -141233228 - L3 LINE CR1 -799 778 689 6148 64 58 31 chr1 101431125 101432072 -141232281 - SVA Other Other 0 1386 433 1241 97 9 68 chr1 101432088 101432552 -141231801 - SVA Other Other -518 868 508 779 144 40 0 chr1 101433419 101433544 -141230809 + FLAM_C SINE Alu 1 130 -3 771 117 0 0 chr1 101433664 101433767 -141230586 + FLAM_C SINE Alu 8 110 -33 216 0 0 0 chr1 101433779 101433803 -141230550 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 420 220 158 34 chr1 101434398 101434575 -141229778 + MLT1J LTR MaLR 1 199 -312 1941 99 0 91 chr1 101434605 101434947 -141229406 + AluY SINE Alu 1 311 0 1489 151 19 35 chr1 101435418 101435676 -141228677 + AluJo SINE Alu 28 281 -31 211 292 14 56 chr1 101436047 101436119 -141228234 - MIR SINE MIR -188 74 6 * 477 264 99 40 chr1 101436100 101436301 -141228052 - MIR SINE MIR -46 216 4 193 261 0 22 chr1 101436539 101436585 -141227768 - L2 LINE L2 -88 3225 3181 24 0 0 0 chr1 101436872 101436896 -141227457 + AT_rich Low_complexity Low_complexity 1 24 0 604 174 97 107 chr1 101438610 101438806 -141225547 - MER20 DNA MER1_type -3 216 23 357 232 135 14 chr1 101438828 101438979 -141225374 + L1ME3 LINE L1 5660 5829 -333 1939 176 0 7 chr1 101441103 101441405 -141222948 + AluJb SINE Alu 5 304 -8 841 210 258 0 chr1 101441463 101441734 -141222619 - MER2 DNA MER2_type -2 342 2 1797 167 42 42 chr1 101441868 101442167 -141222186 + Tigger1 DNA MER2_type 3 304 -2114 1941 140 7 3 chr1 101442167 101442452 -141221901 + AluSx SINE Alu 4 289 -23 1797 167 42 42 chr1 101442452 101442553 -141221800 + Tigger1 DNA MER2_type 303 403 -2015 1424 193 0 4 chr1 101443705 101443943 -141220410 - AluJo SINE Alu -63 249 13 2103 96 90 11 chr1 101444348 101444703 -141219650 - MER11C LTR ERVK 0 1071 689 2893 147 32 56 chr1 101444828 101445488 -141218865 - L1 LINE L1 -2313 3833 3190 27 29 0 0 chr1 101445509 101445543 -141218810 + AT_rich Low_complexity Low_complexity 1 34 0 231 36 0 0 chr1 101445847 101445875 -141218478 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 250 253 86 86 chr1 101445881 101446150 -141218203 - MLT1L LTR MaLR -335 280 12 207 330 51 91 chr1 101446271 101446468 -141217885 + MIR3 SINE MIR 4 192 -16 22 70 0 0 chr1 101446673 101446716 -141217637 + AT_rich Low_complexity Low_complexity 1 43 0 636 148 0 67 chr1 101447608 101447743 -141216610 - MLT1C LTR MaLR -341 126 1 519 266 45 25 chr1 101447743 101447941 -141216412 + MLT1F LTR MaLR 337 538 -4 187 150 150 0 chr1 101450987 101451027 -141213326 - L2 LINE L2 -7 3306 3261 1824 133 14 18 chr1 101451447 101451732 -141212621 + AluSx SINE Alu 5 288 -24 2698 147 70 16 chr1 101451877 101452451 -141211902 + Tigger7 DNA MER2_type 1 2487 0 292 221 0 57 chr1 101452718 101452840 -141211513 + AluSp/q SINE Alu 177 291 -12 2373 62 0 31 chr1 101452978 101453299 -141211054 - AluY SINE Alu 0 311 1 2300 109 0 3 chr1 101453886 101454190 -141210163 - AluSx SINE Alu -9 303 1 912 203 11 28 chr1 101454328 101454505 -141209848 - AluJo SINE Alu -16 296 123 485 180 9 9 chr1 101454629 101454740 -141209613 - MLT1A1-int LTR MaLR -1622 113 3 2222 142 22 30 chr1 101454741 101455107 -141209246 - MLT1A1 LTR MaLR -2 363 1 309 213 113 0 chr1 101455130 101455210 -141209143 - L1ME3A LINE L1 -196 5974 5886 535 282 67 5 chr1 101455378 101455573 -141208780 + MIR SINE MIR 52 258 -4 271 316 108 6 chr1 101456558 101456716 -141207637 + MARNA DNA Mariner 66 239 -347 2126 103 10 0 chr1 101456762 101457075 -141207278 - AluSp SINE Alu 0 313 1 1673 229 87 0 chr1 101457076 101457525 -141206828 - L1M4 LINE L1 -816 5330 4843 645 173 0 153 chr1 101457532 101457682 -141206671 + FLAM_A SINE Alu 6 132 -10 784 206 48 43 chr1 101457683 101457892 -141206461 - L1M4 LINE L1 -1287 4859 4650 891 220 6 0 chr1 101457895 101458068 -141206285 - FRAM SINE Alu -8 168 1 3012 177 86 11 chr1 101458190 101458421 -141205932 + MER4B-int LTR ERV1 3471 3683 -3075 2736 20 3 0 chr1 101458421 101458726 -141205627 + AluY SINE Alu 1 306 -5 3012 177 86 11 chr1 101458726 101459143 -141205210 + MER4B-int LTR ERV1 3683 4168 -2590 2014 138 3 3 chr1 101459144 101459440 -141204913 - AluSx SINE Alu -16 296 1 1234 258 87 34 chr1 101459509 101460007 -141204346 + MER77 LTR ERV1 52 599 -6 708 227 32 0 chr1 101460164 101460318 -141204035 + MLT1C LTR MaLR 287 445 -22 479 285 68 38 chr1 101460798 101461061 -141203292 + MLT1L LTR MaLR 21 291 -324 2480 54 0 3 chr1 101461216 101461512 -141202841 - AluSg SINE Alu -15 295 1 848 118 15 15 chr1 101461512 101461647 -141202706 - AluSq/x SINE Alu -177 135 1 216 0 0 0 chr1 101462031 101462055 -141202298 + (TG)n Simple_repeat Simple_repeat 2 25 0 2139 99 3 20 chr1 101462062 101462366 -141201987 - AluSx SINE Alu -13 299 1 2251 98 3 0 chr1 101462720 101463015 -141201338 + AluSc SINE Alu 1 296 -13 1046 201 37 127 chr1 101463063 101463279 -141201074 + L1ME3A LINE L1 5728 5890 -274 2089 134 7 3 chr1 101463279 101463584 -141200769 + AluSx SINE Alu 1 306 -6 1046 201 37 127 chr1 101463584 101463776 -141200577 + L1ME3A LINE L1 5890 6098 -66 211 175 0 0 chr1 101464083 101464123 -141200230 - L2 LINE L2 -2 3311 3272 23 0 0 0 chr1 101464189 101464212 -141200141 + AT_rich Low_complexity Low_complexity 1 23 0 2108 127 3 13 chr1 101464958 101465266 -141199087 - AluSx SINE Alu -7 305 1 472 186 121 24 chr1 101466052 101466176 -141198177 + MER3 DNA MER1_type 41 129 -80 * 998 193 206 3 chr1 101466171 101466492 -141197861 + MER3 DNA MER1_type 2238 2623 0 660 174 0 9 chr1 101468145 101468260 -141196093 + FRAM SINE Alu 48 161 -15 234 244 205 0 chr1 101468312 101468390 -141195963 + MIR SINE MIR 136 229 -33 1571 201 146 37 chr1 101468576 101469047 -141195306 - L1MEc LINE L1 -3238 2977 2559 197 33 33 0 chr1 101469047 101469077 -141195276 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2097 94 7 4 chr1 101469087 101469362 -141194991 - AluSq SINE Alu -37 276 1 2145 120 0 3 chr1 101469371 101469672 -141194681 - AluSq SINE Alu -1 312 13 1571 201 146 37 chr1 101469672 101469827 -141194526 - L1MEc LINE L1 -3671 2544 2407 2647 95 14 0 chr1 101469827 101470186 -141194167 - L1PA14 LINE L1 0 6161 5798 1571 201 146 37 chr1 101470186 101470481 -141193872 - L1MEc LINE L1 -3808 2407 1765 288 77 0 0 chr1 101470481 101470520 -141193833 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 2095 118 7 0 chr1 101470521 101470810 -141193543 - AluSq SINE Alu -21 292 2 972 135 0 0 chr1 101470813 101470946 -141193407 - AluSq/x SINE Alu -179 133 1 2273 78 3 7 chr1 101471084 101471391 -141192962 - AluY SINE Alu -5 306 1 2218 80 0 11 chr1 101471417 101471728 -141192625 + AluY SINE Alu 1 308 0 854 129 8 8 chr1 101472135 101472259 -141192094 - FLAM_C SINE Alu -19 124 1 2392 71 0 0 chr1 101472996 101473291 -141191062 + AluSc SINE Alu 1 295 -14 477 185 134 0 chr1 101473579 101473698 -141190655 + MIR SINE MIR 82 216 -46 479 265 34 0 chr1 101473969 101474086 -141190267 - MIR SINE MIR -22 240 120 204 170 19 38 chr1 101475249 101475302 -141189051 + C-rich Low_complexity Low_complexity 5 56 0 190 248 224 64 chr1 101476061 101476186 -141188167 + MIR3 SINE MIR 60 204 -4 1926 128 0 61 chr1 101476188 101476517 -141187836 - AluSx SINE Alu -3 309 1 195 205 0 0 chr1 101476689 101476728 -141187625 + L2 LINE L2 2596 2634 -680 229 268 56 14 chr1 101476744 101476815 -141187538 - L2 LINE L2 -13 3300 3227 2605 118 11 14 chr1 101476915 101477280 -141187073 + THE1B LTR MaLR 1 364 0 2163 110 14 0 chr1 101477372 101477663 -141186690 + AluSq SINE Alu 1 295 -18 2343 96 0 10 chr1 101477823 101478136 -141186217 - AluSx SINE Alu -2 310 1 1812 138 65 21 chr1 101478620 101478911 -141185442 - AluSq SINE Alu -7 306 3 2354 97 7 0 chr1 101479361 101479669 -141184684 - AluSq SINE Alu -3 310 1 689 112 112 32 chr1 101479669 101479794 -141184559 - MIR SINE MIR -112 150 16 2144 133 0 3 chr1 101479850 101480150 -141184203 - AluSx SINE Alu -13 299 1 1654 194 7 17 chr1 101480288 101480587 -141183766 - AluJo SINE Alu -16 296 1 2427 137 60 38 chr1 101480612 101480650 -141183703 - MSTB LTR MaLR 0 426 390 1472 215 13 10 chr1 101480650 101480961 -141183392 + AluJo SINE Alu 1 312 0 2427 137 60 38 chr1 101480961 101481339 -141183014 - MSTB LTR MaLR -36 390 1 392 277 64 21 chr1 101481593 101481734 -141182619 - L2 LINE L2 -5 3308 3162 218 231 58 0 chr1 101481756 101481808 -141182545 - L2 LINE L2 -327 2986 2932 336 322 191 21 chr1 101481841 101482323 -141182030 + L2 LINE L2 1539 2102 -1212 * 705 298 84 20 chr1 101482300 101482599 -141181754 + L2 LINE L2 2985 3302 -11 414 310 31 23 chr1 101482579 101482708 -141181645 - L2 LINE L2 -7 3265 3136 * 340 285 225 49 chr1 101482944 101483211 -141181142 - L2 LINE L2 -157 3156 2843 5788 34 6 0 chr1 101483211 101483892 -141180461 - L1PA5 LINE L1 -1402 4744 4060 7903 36 6 1 chr1 101483897 101485310 -141179043 + L1PA5 LINE L1 4732 6149 -5 1150 259 140 0 chr1 101485380 101485751 -141178602 - L2 LINE L2 -524 2790 2368 362 192 162 0 chr1 101486832 101486931 -141177422 + Charlie7 DNA MER1_type 43 157 -2455 276 281 82 7 chr1 101487440 101487586 -141176767 - L1ME4a LINE L1 0 6121 5965 1802 141 14 10 chr1 101487609 101487899 -141176454 + AluSx SINE Alu 1 291 -21 236 216 103 0 chr1 101488019 101488116 -141176237 + L1MC4 LINE L1 7918 8024 -18 276 56 0 0 chr1 101488427 101488463 -141175890 + MADE1 DNA Mariner 41 76 -4 2305 64 14 7 chr1 101488739 101489055 -141175298 + AluY SINE Alu 1 311 0 2168 104 3 3 chr1 101489137 101489435 -141174918 - AluSp SINE Alu -15 298 1 21 71 0 0 chr1 101489939 101489981 -141174372 + AT_rich Low_complexity Low_complexity 1 42 0 776 136 0 2 chr1 101490148 101490394 -141173959 + AluJ SINE Alu 3 295 -17 222 62 0 0 chr1 101491418 101491450 -141172903 + (TATG)n Simple_repeat Simple_repeat 3 34 0 765 167 8 0 chr1 101491450 101491565 -141172788 - FLAM_C SINE Alu -17 116 1 189 0 0 0 chr1 101491692 101491713 -141172640 + (CAG)n Simple_repeat Simple_repeat 2 22 0 2332 62 35 0 chr1 101493285 101493573 -141170780 - AluY SINE Alu -13 298 1 1877 128 65 0 chr1 101493699 101493989 -141170364 - AluSx SINE Alu -3 309 1 33 53 0 26 chr1 101494626 101494665 -141169688 + AT_rich Low_complexity Low_complexity 1 39 -35 1818 126 14 24 chr1 101494665 101494958 -141169395 - AluJb SINE Alu -22 290 1 33 53 0 26 chr1 101494958 101494994 -141169359 + AT_rich Low_complexity Low_complexity 39 74 0 1960 83 76 0 chr1 101495101 101495378 -141168975 - AluY SINE Alu -12 299 2 1012 120 0 0 chr1 101495381 101495514 -141168839 - AluSq/x SINE Alu -180 133 1 2553 43 3 0 chr1 101495652 101495957 -141168396 - AluY SINE Alu -5 306 1 1729 136 75 4 chr1 101496959 101497239 -141167114 - AluSx SINE Alu -12 300 1 2150 100 0 44 chr1 101497346 101497665 -141166688 - AluSg SINE Alu -5 305 1 2094 130 3 0 chr1 101497866 101498166 -141166187 - AluSg SINE Alu -9 301 1 2076 124 0 0 chr1 101498404 101498720 -141165633 - AluSx SINE Alu 0 312 1 23 0 0 0 chr1 101498957 101498980 -141165373 + AT_rich Low_complexity Low_complexity 1 23 0 640 91 0 0 chr1 101499035 101499112 -141165241 - AluS SINE Alu -230 82 6 2039 136 0 0 chr1 101499394 101499680 -141164673 - AluSx SINE Alu -26 286 1 2259 101 0 0 chr1 101500820 101501116 -141163237 - AluY SINE Alu -15 296 1 22 0 0 0 chr1 101501165 101501187 -141163166 + AT_rich Low_complexity Low_complexity 1 22 0 2025 101 51 3 chr1 101501730 101502026 -141162327 + AluY SINE Alu 1 310 -1 28 48 0 0 chr1 101502379 101502421 -141161932 + AT_rich Low_complexity Low_complexity 1 42 0 730 118 0 0 chr1 101502733 101502835 -141161518 - AluSg/x SINE Alu 0 312 211 2117 138 0 0 chr1 101503256 101503554 -141160799 - AluSx SINE Alu -14 298 1 425 276 99 0 chr1 101504088 101504269 -141160084 + MIR SINE MIR 64 262 0 320 281 114 0 chr1 101504570 101504684 -141159669 + MIR SINE MIR 65 191 -71 2796 16 0 6 chr1 101505303 101505614 -141158739 + AluYa5 SINE Alu 1 311 0 387 0 0 0 chr1 101506122 101506165 -141158188 + (TG)n Simple_repeat Simple_repeat 2 44 0 1148 110 0 31 chr1 101506173 101506336 -141158017 - AluSg/x SINE Alu -21 289 132 1936 112 4 4 chr1 101506336 101506604 -141157749 - AluSq SINE Alu -5 308 41 2098 138 7 0 chr1 101506948 101507253 -141157100 - AluSx SINE Alu -5 307 1 556 325 114 41 chr1 101507510 101508188 -141156165 - L2 LINE L2 -954 2360 1634 2586 66 30 0 chr1 101508878 101509212 -141155141 + L1PA7 LINE L1 5805 6148 -6 186 329 101 31 chr1 101509615 101509843 -141154510 - L2 LINE L2 -475 2839 2596 305 351 40 14 chr1 101510442 101510590 -141153763 + L2 LINE L2 2227 2378 -936 1624 157 34 34 chr1 101510595 101510888 -141153465 - AluJb SINE Alu -19 293 1 282 261 59 34 chr1 101511493 101511612 -141152741 - MLT1K LTR MaLR -22 566 445 226 253 60 12 chr1 101511852 101511935 -141152418 - MLT1L LTR MaLR -409 206 120 254 191 0 0 chr1 101511984 101512026 -141152327 + L2 LINE L2 3221 3262 -10 352 41 0 20 chr1 101512069 101512118 -141152235 + MSTC LTR MaLR 1 48 -380 1983 151 3 3 chr1 101512125 101512423 -141151930 + AluSq SINE Alu 1 298 -15 2121 127 3 13 chr1 101513070 101513378 -141150975 - AluSx SINE Alu -7 305 1 412 186 121 24 chr1 101514164 101514288 -141150065 + MER3 DNA MER1_type 41 129 -80 * 820 194 171 3 chr1 101514283 101514587 -141149766 + MER3 DNA MER1_type 2238 2592 0 629 165 0 9 chr1 101516257 101516372 -141147981 + FRAM SINE Alu 48 161 -15 252 266 170 11 chr1 101516408 101516502 -141147851 + MIR SINE MIR 121 229 -33 1609 217 80 39 chr1 101516687 101517160 -141147193 - L1MEc LINE L1 -3238 2977 2525 279 0 0 0 chr1 101517160 101517191 -141147162 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2178 99 3 3 chr1 101517196 101517479 -141146874 - AluSq SINE Alu -30 283 1 2153 120 0 3 chr1 101517488 101517789 -141146564 - AluSq SINE Alu -1 312 13 1609 217 80 39 chr1 101517789 101517944 -141146409 - L1MEc LINE L1 -3700 2515 2368 2458 95 14 0 chr1 101517944 101518303 -141146050 - L1PA14 LINE L1 0 6161 5798 1609 217 80 39 chr1 101518303 101518642 -141145711 - L1MEc LINE L1 -3847 2368 2044 2227 110 0 0 chr1 101518642 101518934 -141145419 - AluSq SINE Alu -21 292 1 1609 217 80 39 chr1 101518934 101519085 -141145268 - L1MEc LINE L1 -4171 2044 1628 2403 185 73 36 chr1 101519087 101519577 -141144776 - L1MC2 LINE L1 -10 6334 5814 2651 139 79 19 chr1 101519577 101520110 -141144243 - L1MA8 LINE L1 -8 6283 5719 2403 185 73 36 chr1 101520110 101520252 -141144101 - L1MC2 LINE L1 -530 5814 5679 1805 147 9 67 chr1 101520263 101520590 -141143763 - AluJb SINE Alu -4 308 1 1040 264 140 42 chr1 101520591 101520987 -141143366 - L1MEc LINE L1 -4619 1596 1241 1948 128 0 50 chr1 101520987 101521306 -141143047 - AluSx SINE Alu -7 305 3 1040 264 140 42 chr1 101521306 101521695 -141142658 - L1MEc LINE L1 -4974 1241 758 625 209 54 0 chr1 101521974 101522122 -141142231 + MER3 DNA MER1_type 16 124 -85 238 91 0 0 chr1 101522227 101522260 -141142093 - Alu SINE Alu -100 33 1 2050 118 42 0 chr1 101522747 101523035 -141141318 + AluSq SINE Alu 1 300 -13 2118 137 3 0 chr1 101523349 101523648 -141140705 + AluSx SINE Alu 1 300 -12 2002 147 7 10 chr1 101523658 101523965 -141140388 + AluSx SINE Alu 2 307 -5 23 0 0 0 chr1 101524198 101524221 -141140132 + AT_rich Low_complexity Low_complexity 1 23 0 209 188 0 0 chr1 101524442 101524474 -141139879 - MIR SINE MIR -171 91 60 23 0 0 0 chr1 101524789 101524812 -141139541 + AT_rich Low_complexity Low_complexity 1 23 0 1818 176 16 7 chr1 101525568 101525875 -141138478 + AluJb SINE Alu 2 311 -1 1060 165 0 6 chr1 101525878 101526048 -141138305 + AluJb SINE Alu 141 309 -3 21 57 0 0 chr1 101526084 101526119 -141138234 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 101526425 101526455 -141137898 + AT_rich Low_complexity Low_complexity 1 30 0 1653 151 0 29 chr1 101526552 101526830 -141137523 + AluJb SINE Alu 11 280 -32 183 42 0 0 chr1 101526830 101526854 -141137499 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 33 25 0 0 chr1 101526933 101526973 -141137380 + AT_rich Low_complexity Low_complexity 1 40 0 294 370 58 14 chr1 101527228 101527365 -141136988 + L2 LINE L2 211 353 -2961 870 199 58 0 chr1 101527365 101527536 -141136817 + MER5A DNA MER1_type 2 182 -7 2487 252 170 34 chr1 101527536 101528071 -141136282 + L2 LINE L2 386 847 -2467 1971 123 7 18 chr1 101528071 101528382 -141135971 - AluSx SINE Alu 0 308 1 2487 252 170 34 chr1 101528382 101528869 -141135484 + L2 LINE L2 847 1548 -1766 2362 72 0 16 chr1 101529061 101529366 -141134987 - AluY SINE Alu -11 300 1 252 157 0 0 chr1 101529393 101529444 -141134909 - L1MB7 LINE L1 -42 6142 6092 25 0 0 0 chr1 101529643 101529668 -141134685 + AT_rich Low_complexity Low_complexity 1 25 0 2098 97 0 0 chr1 101529745 101530003 -141134350 - AluSc SINE Alu -15 294 37 348 286 176 31 chr1 101530173 101530478 -141133875 - L1ME LINE L1 -299 5822 5446 1855 153 0 37 chr1 101530478 101530799 -141133554 - AluJo SINE Alu 0 312 4 348 286 176 31 chr1 101530799 101530885 -141133468 - L1ME LINE L1 -675 5446 5374 25 31 0 0 chr1 101530981 101531013 -141133340 + AT_rich Low_complexity Low_complexity 1 32 0 2206 117 7 0 chr1 101531842 101532140 -141132213 + AluSx SINE Alu 1 300 -12 292 233 30 23 chr1 101532219 101532352 -141132001 + L1MEd LINE L1 945 1078 -5041 271 143 16 63 chr1 101532352 101532415 -141131938 + MER58 DNA MER1_type 2361 2420 0 312 314 122 17 chr1 101532496 101532668 -141131685 + L1MEd LINE L1 1055 1244 -4887 255 263 12 12 chr1 101532693 101532773 -141131580 + L1MEd LINE L1 1436 1515 -4795 1599 133 82 30 chr1 101533087 101533357 -141130996 + AluSx SINE Alu 2 285 -27 2140 117 0 31 chr1 101533764 101534081 -141130272 - AluJb SINE Alu 0 312 6 287 296 0 0 chr1 101534091 101534179 -141130174 - MLT1J2 LTR MaLR -273 177 90 346 245 112 31 chr1 101534230 101534426 -141129927 + L1ME3 LINE L1 5339 5550 -614 721 216 60 12 chr1 101534426 101534593 -141129760 + AluJo SINE Alu 121 295 -17 311 266 104 120 chr1 101534594 101534634 -141129719 + L1ME3 LINE L1 5567 5606 -556 2193 137 77 10 chr1 101534634 101535035 -141129318 + MSTA LTR MaLR 1 428 0 311 266 104 120 chr1 101535035 101535310 -141129043 + L1ME3 LINE L1 5606 5877 -285 266 265 119 48 chr1 101535334 101535628 -141128725 - L1M4 LINE L1 -1780 4366 4052 303 262 131 16 chr1 101535692 101535883 -141128470 - L1M4 LINE L1 -2189 3957 3745 6342 83 15 16 chr1 101536077 101537637 -141126716 - SVA Other Other -760 1385 23 1015 177 11 11 chr1 101537777 101537952 -141126401 + FAM SINE Alu 1 175 0 438 263 83 0 chr1 101538021 101538154 -141126199 + L1MEd LINE L1 2669 2812 -3317 720 203 0 8 chr1 101538156 101538279 -141126074 + FLAM_C SINE Alu 2 123 -10 2171 129 0 7 chr1 101538381 101538691 -141125662 - AluSx SINE Alu -2 310 3 1925 163 0 3 chr1 101538720 101539015 -141125338 - AluJb SINE Alu -18 294 1 318 182 84 91 chr1 101539052 101539104 -141125249 + L1MEd LINE L1 2931 2982 -3147 2116 66 52 24 chr1 101539104 101539393 -141124960 + AluY SINE Alu 2 298 -13 318 182 84 91 chr1 101539393 101539494 -141124859 + L1MEd LINE L1 2982 3083 -3046 1808 145 133 48 chr1 101539494 101539894 -141124459 + Tigger2a DNA MER2_type 1 434 0 397 228 40 0 chr1 101539899 101540000 -141124353 + L1ME LINE L1 5524 5628 -538 25 31 0 0 chr1 101540687 101540719 -141123634 + GC_rich Low_complexity Low_complexity 1 32 0 413 18 0 18 chr1 101541181 101541236 -141123117 + (TG)n Simple_repeat Simple_repeat 1 54 0 207 0 0 0 chr1 101541236 101541259 -141123094 + (GA)n Simple_repeat Simple_repeat 2 24 0 287 206 20 128 chr1 101541914 101542016 -141122337 + MIR SINE MIR 167 257 -5 379 281 89 37 chr1 101542231 101542366 -141121987 + MIR3 SINE MIR 3 144 -64 1213 163 194 3 chr1 101543389 101543677 -141120676 - MSTD LTR MaLR -2 394 52 1737 197 11 0 chr1 101543680 101543964 -141120389 - AluJo SINE Alu -25 287 1 23 0 0 0 chr1 101544077 101544100 -141120253 + AT_rich Low_complexity Low_complexity 1 23 0 795 193 22 22 chr1 101544428 101544609 -141119744 - MLT1A1 LTR MaLR 0 365 185 256 95 95 0 chr1 101544624 101544666 -141119687 - MLT1A1 LTR MaLR -319 46 1 207 0 0 0 chr1 101544747 101544770 -141119583 + (T)n Simple_repeat Simple_repeat 1 23 0 2074 63 0 34 chr1 101544803 101545072 -141119281 + AluY SINE Alu 42 301 -10 2066 130 17 17 chr1 101545394 101545694 -141118659 - AluSx SINE Alu -12 300 1 312 228 0 138 chr1 101546313 101546360 -141117993 - MIR SINE MIR -1 261 209 1395 86 40 0 chr1 101546360 101546558 -141117795 - L1PA10 LINE L1 -3 6165 5960 312 228 0 138 chr1 101546558 101546633 -141117720 - MIR SINE MIR -53 209 156 245 271 17 0 chr1 101549217 101549276 -141115077 - L2 LINE L2 -1 3312 3253 879 259 21 17 chr1 101549604 101549843 -141114510 + MIR SINE MIR 23 262 0 268 379 142 8 chr1 101549957 101550218 -141114135 - L2 LINE L2 -556 2758 2463 2209 95 0 0 chr1 101550391 101550706 -141113647 - AluSq SINE Alu 0 315 1 1877 160 7 13 chr1 101550929 101551098 -141113255 - AluJb SINE Alu -8 304 136 2064 96 71 0 chr1 101551098 101551379 -141112974 - AluSp SINE Alu -12 301 1 1877 160 7 13 chr1 101551379 101551515 -141112838 - AluJb SINE Alu -176 136 1 191 259 103 0 chr1 101552263 101552321 -141112032 - L3 LINE CR1 -1110 467 404 2218 116 0 26 chr1 101552513 101552824 -141111529 + AluSp SINE Alu 1 303 -10 839 122 9 0 chr1 101552834 101552949 -141111404 + FLAM_C SINE Alu 1 116 -17 2115 153 0 3 chr1 101553197 101553510 -141110843 + AluJb SINE Alu 1 312 0 665 119 4 2 chr1 101553987 101554231 -141110122 + AluSq SINE Alu 3 303 -10 248 242 27 44 chr1 101554375 101554495 -141109858 - MLT1G LTR MaLR -3 566 432 1650 139 6 89 chr1 101555717 101556041 -141108312 - AluJo SINE Alu -15 297 1 290 200 0 0 chr1 101556364 101556419 -141107934 + Alu SINE Alu 243 297 -5 1984 143 3 3 chr1 101556755 101557063 -141107290 + AluSx SINE Alu 1 308 -4 270 299 131 43 chr1 101557124 101557733 -141106620 + L1ME4a LINE L1 5255 5917 -204 1853 164 6 0 chr1 101557752 101558076 -141106277 + MLT2C1 LTR ERVL 10 335 -62 1951 122 28 7 chr1 101558077 101558364 -141105989 - AluJb SINE Alu -19 293 1 915 94 31 0 chr1 101558368 101558528 -141105825 + CT-rich Low_complexity Low_complexity 2 166 0 1218 116 6 23 chr1 101558528 101558700 -141105653 - AluSx SINE Alu -32 280 112 592 109 129 10 chr1 101558863 101558964 -141105389 - AluSx SINE Alu -200 113 1 782 280 81 16 chr1 101558986 101559307 -141105046 + MLT1J LTR MaLR 168 509 -2 796 209 0 0 chr1 101559615 101559763 -141104590 - FRAM SINE Alu -31 145 1 1395 243 97 65 chr1 101559814 101559859 -141104494 - HAL1 LINE L1 0 2507 2465 1906 132 11 0 chr1 101559859 101560164 -141104189 + AluSx SINE Alu 1 308 0 1395 243 97 65 chr1 101560164 101560959 -141103394 - HAL1 LINE L1 -42 2465 1637 777 179 0 8 chr1 101560959 101561093 -141103260 + FLAM_C SINE Alu 1 133 0 1572 205 96 48 chr1 101561206 101561810 -141102543 - HAL1 LINE L1 -1054 1453 821 247 229 0 0 chr1 101564049 101564097 -141100256 - LTR52 LTR ERVL -37 384 337 862 201 76 9 chr1 101564123 101564347 -141100006 - LTR52 LTR ERVL -182 239 1 22 70 0 0 chr1 101564555 101564598 -141099755 + AT_rich Low_complexity Low_complexity 1 43 0 11354 159 42 16 chr1 101564600 101566717 -141097636 - L1M2 LINE L1 -743 5403 3341 1822 162 3 33 chr1 101566717 101567019 -141097334 - AluJo SINE Alu -19 293 1 11354 159 42 16 chr1 101567019 101567129 -141097224 - L1M2 LINE L1 -2805 3341 3235 2282 125 0 0 chr1 101567129 101567441 -141096912 - AluSx SINE Alu 0 312 1 11354 159 42 16 chr1 101567441 101567683 -141096670 - L1M2 LINE L1 -2911 3235 2935 541 314 59 56 chr1 101568447 101568855 -141095498 - HAL1b LINE L1 -859 489 81 2940 164 43 14 chr1 101570737 101571161 -141093192 - Charlie1a DNA MER1_type -1307 1454 1044 2395 87 0 0 chr1 101571161 101571470 -141092883 - AluSg SINE Alu -1 309 1 2940 164 43 14 chr1 101571470 101571949 -141092404 - Charlie1a DNA MER1_type -1717 1044 472 993 146 58 29 chr1 101571951 101572122 -141092231 + AluJb SINE Alu 121 296 -16 1834 193 21 74 chr1 101572122 101572608 -141091745 - Charlie1a DNA MER1_type -991 464 5 1462 170 57 53 chr1 101573411 101573711 -141090642 - AluJo SINE Alu -11 301 1 216 111 0 0 chr1 101573727 101573763 -141090590 + (TA)n Simple_repeat Simple_repeat 1 36 0 799 286 179 24 chr1 101573764 101574272 -141090081 + L2 LINE L2 2724 3313 0 2348 103 3 3 chr1 101574525 101574837 -141089516 + AluSx SINE Alu 1 312 0 28 48 0 0 chr1 101575149 101575191 -141089162 + AT_rich Low_complexity Low_complexity 1 42 0 2027 128 47 0 chr1 101575544 101575840 -141088513 - AluJb SINE Alu -1 311 2 926 230 94 47 chr1 101575895 101576458 -141087895 - L1MC5 LINE L1 -202 7759 7260 612 233 54 22 chr1 101576491 101576714 -141087639 - L1MC5 LINE L1 -728 7233 7004 408 266 87 22 chr1 101576745 101576929 -141087424 - L1MC4 LINE L1 -1031 7011 6816 1222 326 98 35 chr1 101577664 101578713 -141085640 - L2 LINE L2 0 3272 2150 1180 234 90 58 chr1 101578765 101579025 -141085328 + L1ME4a LINE L1 710 960 -5412 2318 90 3 0 chr1 101579025 101579314 -141085039 + AluSx SINE Alu 13 302 -10 1180 234 90 58 chr1 101579314 101579685 -141084668 + L1ME4a LINE L1 960 1361 -5011 386 291 90 32 chr1 101579762 101580083 -141084270 + L1ME4a LINE L1 2221 2560 -3822 267 114 0 0 chr1 101580694 101580738 -141083615 + (GA)n Simple_repeat Simple_repeat 2 45 0 1260 266 104 48 chr1 101581122 101581352 -141083001 + L1ME4a LINE L1 2698 2914 -3468 924 118 0 15 chr1 101581352 101581487 -141082866 - FLAM_C SINE Alu 0 133 1 1260 266 104 48 chr1 101581487 101582308 -141082045 + L1ME4a LINE L1 2914 3687 -2695 2261 100 0 7 chr1 101582308 101582607 -141081746 - AluSx SINE Alu -15 297 1 1260 266 104 48 chr1 101582607 101582864 -141081489 + L1ME4a LINE L1 3687 3928 -2454 2224 114 3 0 chr1 101582864 101583163 -141081190 + AluSp SINE Alu 1 300 -13 1260 266 104 48 chr1 101583163 101583293 -141081060 + L1ME4a LINE L1 3928 4219 -2163 180 0 0 0 chr1 101583384 101583404 -141080949 + (TAA)n Simple_repeat Simple_repeat 2 21 0 339 267 78 49 chr1 101583768 101583857 -141080496 + L1ME4a LINE L1 4241 4326 -2056 2055 128 3 3 chr1 101583857 101584155 -141080198 + AluSx SINE Alu 1 298 -14 339 267 78 49 chr1 101584155 101584366 -141079987 + L1ME4a LINE L1 4326 4555 -1827 691 185 73 20 chr1 101584562 101584713 -141079640 - FRAM SINE Alu -14 162 4 1340 157 28 120 chr1 101584833 101585157 -141079196 + AluJo SINE Alu 1 294 -18 35 0 0 0 chr1 101585160 101585195 -141079158 + AT_rich Low_complexity Low_complexity 1 35 0 280 275 114 8 chr1 101585206 101585337 -141079016 + L1ME4a LINE L1 4797 4941 -1441 688 117 0 0 chr1 101585340 101585434 -141078919 + AluS SINE Alu 1 94 -219 2187 96 24 0 chr1 101585586 101585878 -141078475 - AluSx SINE Alu -13 299 1 570 275 73 25 chr1 101586140 101586467 -141077886 + L1ME4a LINE L1 5775 6117 -240 23 54 0 0 chr1 101586573 101586610 -141077743 + AT_rich Low_complexity Low_complexity 1 37 0 828 129 0 0 chr1 101586629 101586745 -141077608 + FLAM_C SINE Alu 1 116 -17 2310 106 0 3 chr1 101587007 101587318 -141077035 + AluSg SINE Alu 1 310 0 682 202 119 37 chr1 101587463 101587681 -141076672 - MER106A DNA MER1_type 0 236 1 1700 164 0 28 chr1 101588561 101588848 -141075505 + AluJb SINE Alu 1 279 -33 510 187 49 32 chr1 101588942 101589065 -141075288 + L2 LINE L2 3189 3313 0 2027 158 30 0 chr1 101589161 101589465 -141074888 + AluSq SINE Alu 1 313 0 254 293 177 20 chr1 101589811 101589958 -141074395 - MIR SINE MIR -80 182 13 1783 174 23 0 chr1 101592866 101593165 -141071188 + AluJb SINE Alu 1 306 -6 2098 129 3 3 chr1 101593281 101593591 -141070762 - AluSp SINE Alu -3 310 1 267 152 114 13 chr1 101593696 101593775 -141070578 - MER69 DNA AcHobo -93 2433 2347 734 296 120 9 chr1 101593780 101594343 -141070010 - MER69 DNA AcHobo -1770 756 13 248 278 0 28 chr1 101594350 101594422 -141069931 + GA-rich Low_complexity Low_complexity 3 72 0 1016 183 0 0 chr1 101594769 101594933 -141069420 + FRAM SINE Alu 1 161 -15 28 0 0 0 chr1 101594975 101595003 -141069350 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chr1 101595038 101595089 -141069264 + AT_rich Low_complexity Low_complexity 1 51 0 2494 66 0 0 chr1 101595111 101595412 -141068941 + AluSg SINE Alu 1 301 -9 304 286 16 79 chr1 101595417 101595543 -141068810 - L1ME3A LINE L1 -88 6082 5965 1865 166 23 3 chr1 101595606 101595950 -141068403 + MLT2D LTR ERVL 2 352 -62 354 100 0 0 chr1 101595965 101596025 -141068328 + (CA)n Simple_repeat Simple_repeat 1 60 0 246 61 0 0 chr1 101596025 101596058 -141068295 - MLT2B1 LTR ERVL -11 509 477 489 0 70 0 chr1 101596071 101596142 -141068211 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 873 222 78 43 chr1 101596253 101596623 -141067730 - L1MC5 LINE L1 -435 7526 7144 341 237 140 0 chr1 101596924 101597017 -141067336 - MIR SINE MIR -51 211 106 228 329 96 0 chr1 101597075 101597148 -141067205 - MIR SINE MIR -171 91 12 1875 170 0 3 chr1 101597325 101597631 -141066722 - AluJb SINE Alu -7 305 1 368 280 89 54 chr1 101597657 101598265 -141066088 + L1M4 LINE L1 4744 5372 -774 280 173 0 29 chr1 101599277 101599381 -141064972 + (CAT)n Simple_repeat Simple_repeat 3 103 0 276 179 0 64 chr1 101600184 101600262 -141064091 + L1MC4a LINE L1 5859 5931 -1877 2077 133 3 3 chr1 101600420 101600721 -141063632 - AluSq SINE Alu -11 302 2 188 33 0 33 chr1 101600742 101600772 -141063581 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 660 209 0 0 chr1 101600783 101600888 -141063465 + FLAM_A SINE Alu 1 105 -37 888 104 16 0 chr1 101600931 101601056 -141063297 - AluSg/x SINE Alu -24 288 162 1687 167 14 17 chr1 101601082 101601244 -141063109 - AluJo SINE Alu -19 293 131 396 0 0 0 chr1 101601244 101601288 -141063065 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1687 167 14 17 chr1 101601288 101601419 -141062934 - AluJo SINE Alu -181 131 1 917 161 21 38 chr1 101601778 101601964 -141062389 - AluJo SINE Alu -8 304 122 1956 127 22 38 chr1 101602021 101602336 -141062017 - AluSx SINE Alu -2 310 1 3083 123 113 38 chr1 101602521 101602849 -141061504 - L1MA9 LINE L1 -40 6272 5970 2264 84 7 7 chr1 101602849 101603146 -141061207 - AluY SINE Alu -2 309 13 3083 123 113 38 chr1 101603146 101603507 -141060846 - L1MA9 LINE L1 -342 5970 5531 728 243 28 6 chr1 101603612 101603789 -141060564 + MIR SINE MIR 82 262 0 941 88 0 22 chr1 101604012 101604148 -141060205 - AluJo SINE Alu -169 133 1 1007 113 7 0 chr1 101604210 101604352 -141060001 - AluJb SINE Alu -8 304 162 381 186 65 82 chr1 101606086 101606233 -141058120 - MER5A DNA MER1_type -40 138 1 2456 58 0 0 chr1 101606278 101606573 -141057780 - AluSx SINE Alu -17 295 1 243 301 82 75 chr1 101607003 101607149 -141057204 - L2 LINE L2 0 3313 3167 272 287 55 73 chr1 101607174 101607338 -141057015 - L2 LINE L2 -222 3050 2890 354 280 88 0 chr1 101607558 101607683 -141056670 - MIR SINE MIR -7 255 120 1089 130 7 0 chr1 101607698 101607852 -141056501 + AluSg/x SINE Alu 143 297 -13 227 233 0 0 chr1 101607852 101607895 -141056458 - MIR SINE MIR -189 73 31 * 242 197 242 15 chr1 101607890 101607956 -141056397 - MIR SINE MIR -147 115 35 205 299 91 0 chr1 101608418 101608495 -141055858 - L2 LINE L2 -647 2667 2584 21 36 0 0 chr1 101608948 101608976 -141055377 + AT_rich Low_complexity Low_complexity 1 28 0 1660 187 30 6 chr1 101608988 101609325 -141055028 + LTR32 LTR ERVL 8 352 -119 782 173 20 7 chr1 101609332 101609482 -141054871 + LTR32 LTR ERVL 317 468 -3 387 319 142 0 chr1 101609802 101609915 -141054438 + L2 LINE L2 3133 3261 -11 311 64 21 0 chr1 101609955 101610002 -141054351 + MSTD LTR MaLR 1 48 -380 1750 104 0 0 chr1 101610009 101610229 -141054124 + AluSx SINE Alu 1 220 -92 439 115 0 0 chr1 101610229 101610290 -141054063 + AluSc SINE Alu 150 210 -99 1043 121 0 0 chr1 101610290 101610431 -141053922 + AluSg/x SINE Alu 144 284 -28 414 178 14 0 chr1 101610446 101610519 -141053834 + AluJb SINE Alu 1 74 -238 3634 106 49 29 chr1 101610519 101611113 -141053240 - LTR14B LTR ERVK 0 608 3 1462 170 0 0 chr1 101611117 101611346 -141053007 + AluJb SINE Alu 70 298 -14 1121 198 188 7 chr1 101611347 101611645 -141052708 + MSTD LTR MaLR 45 396 0 262 246 156 8 chr1 101611673 101611795 -141052558 + MLT1L LTR MaLR 441 580 -35 245 255 7 134 chr1 101612275 101612424 -141051929 - L2 LINE L2 -86 3186 3057 26 30 0 0 chr1 101612995 101613028 -141051325 + AT_rich Low_complexity Low_complexity 1 33 0 388 189 30 3 chr1 101613911 101614073 -141050280 - MER20 DNA MER1_type 0 219 1 2150 159 19 16 chr1 101614168 101614532 -141049821 - MLT1A1 LTR MaLR 0 365 1 2410 173 43 36 chr1 101614666 101615347 -141049006 - L1MB8 LINE L1 -345 5833 5158 2128 129 0 7 chr1 101615347 101615642 -141048711 + AluSx SINE Alu 1 293 -19 2410 173 43 36 chr1 101615642 101615748 -141048605 - L1MB8 LINE L1 -1020 5158 5054 2091 113 106 28 chr1 101615750 101616147 -141048206 + MSTA LTR MaLR 1 428 0 261 83 0 0 chr1 101616150 101616186 -141048167 + (TG)n Simple_repeat Simple_repeat 2 37 0 909 42 34 0 chr1 101616236 101616354 -141047999 - AluY SINE Alu -14 297 176 363 178 167 11 chr1 101616355 101616450 -141047903 - FLAM_A SINE Alu -43 90 2 550 237 31 52 chr1 101616466 101616660 -141047693 - L1MB8 LINE L1 -1112 5034 4845 1283 178 50 58 chr1 101616661 101616819 -141047534 + MLT1A2 LTR MaLR 1 159 -215 1601 178 30 7 chr1 101616819 101617117 -141047236 + AluJb SINE Alu 1 305 -7 1283 178 50 58 chr1 101617117 101617317 -141047036 + MLT1A2 LTR MaLR 159 356 -18 298 221 0 48 chr1 101617320 101617424 -141046929 - L1MB8 LINE L1 -1288 4858 4760 2337 105 3 3 chr1 101617887 101618191 -141046162 - AluSp SINE Alu -9 304 1 595 211 145 18 chr1 101618272 101618438 -141045915 + MIR SINE MIR 61 247 -15 232 221 139 81 chr1 101618923 101619009 -141045344 + L2 LINE L2 3196 3286 -27 456 245 0 47 chr1 101619593 101619699 -141044654 + L2 LINE L2 376 476 -2838 1885 231 25 42 chr1 101619711 101620234 -141044119 + MER74A LTR ERVL 42 555 -3 3537 249 103 36 chr1 101620252 101620674 -141043679 + L2 LINE L2 504 896 -2418 1924 151 10 0 chr1 101620674 101620966 -141043387 - AluSx SINE Alu -15 297 3 3537 249 103 36 chr1 101620966 101621246 -141043107 + L2 LINE L2 896 1156 -2158 1775 188 45 0 chr1 101621246 101621538 -141042815 - AluJo SINE Alu -7 305 1 3537 249 103 36 chr1 101621538 101622081 -141042272 + L2 LINE L2 1156 1834 -1480 1796 176 38 5 chr1 101622083 101622452 -141041901 - L1MB7 LINE L1 -16 6168 5788 2429 214 49 4 chr1 101622457 101622985 -141041368 - MER68 LTR ERV1 -4 558 7 6702 204 70 19 chr1 101622992 101625290 -141039063 - L1MB7 LINE L1 -393 5791 3379 2183 92 0 17 chr1 101625293 101625610 -141038743 - AluSg SINE Alu 0 310 1 1777 95 18 15 chr1 101625629 101625902 -141038451 - L1PB1 LINE L1 0 6151 5878 1971 167 3 3 chr1 101626388 101626700 -141037653 - AluJo SINE Alu 0 312 1 2039 142 16 7 chr1 101626712 101627021 -141037332 - AluSx SINE Alu 0 312 1 25 0 0 0 chr1 101627141 101627166 -141037187 + AT_rich Low_complexity Low_complexity 1 25 0 403 299 130 11 chr1 101628145 101628329 -141036024 - LTR40a LTR ERVL -77 442 237 417 308 29 17 chr1 101629069 101629241 -141035112 - MIR SINE MIR -56 206 33 426 292 146 4 chr1 101629326 101629559 -141034794 + L2 LINE L2 1851 2116 -1198 2246 95 0 3 chr1 101629640 101629934 -141034419 - AluY SINE Alu -18 293 1 1819 161 3 19 chr1 101629939 101630255 -141034098 - AluJb SINE Alu -1 311 1 884 244 111 13 chr1 101630384 101630754 -141033599 - MER57A LTR ERV1 0 403 41 610 327 20 20 chr1 101630776 101631082 -141033271 - MER57-int LTR ERV1 -389 7148 6843 2278 122 0 3 chr1 101631082 101631393 -141032960 + AluY SINE Alu 2 311 0 1253 167 14 27 chr1 101631576 101631798 -141032555 + AluJo SINE Alu 76 294 -18 22 80 0 0 chr1 101631891 101631941 -141032412 + AT_rich Low_complexity Low_complexity 1 50 0 1995 151 51 0 chr1 101632030 101632361 -141031992 + MER7A DNA MER2_type 1 346 0 24 0 0 0 chr1 101633988 101634012 -141030341 + AT_rich Low_complexity Low_complexity 1 24 0 724 242 16 32 chr1 101634939 101635125 -141029228 + MIR SINE MIR 7 189 -73 1920 68 0 4 chr1 101635312 101635549 -141028804 - AluY SINE Alu -75 236 1 21 36 0 0 chr1 101635560 101635588 -141028765 + AT_rich Low_complexity Low_complexity 1 28 0 2111 134 0 3 chr1 101635700 101635999 -141028354 - AluSx SINE Alu -14 298 1 718 250 58 16 chr1 101636290 101636478 -141027875 + MIR SINE MIR 66 261 -1 1747 168 29 4 chr1 101636837 101637117 -141027236 + AluJo SINE Alu 4 290 -22 804 318 42 33 chr1 101638017 101638437 -141025916 - LTR16B LTR ERVL -7 457 31 2388 87 0 0 chr1 101638437 101638736 -141025617 + AluY SINE Alu 1 299 -12 804 318 42 33 chr1 101638736 101638768 -141025585 - LTR16B LTR ERVL -433 31 1 22 35 0 0 chr1 101639119 101639148 -141025205 + AT_rich Low_complexity Low_complexity 1 29 0 3241 218 51 11 chr1 101640579 101641558 -141022795 - L1MEc LINE L1 -3019 3196 2179 1578 186 17 7 chr1 101641563 101641854 -141022499 - AluJo SINE Alu -18 294 1 989 301 84 32 chr1 101641857 101642598 -141021755 - L1MEc LINE L1 -5468 928 150 3687 180 56 38 chr1 101642708 101643598 -141020755 - L1MC3 LINE L1 -21 7764 6855 237 33 0 0 chr1 101643598 101643628 -141020725 + (TG)n Simple_repeat Simple_repeat 2 31 0 3687 180 56 38 chr1 101643628 101643661 -141020692 - L1MC3 LINE L1 -930 6855 6824 4428 130 66 26 chr1 101643667 101643982 -141020371 - Tigger3b DNA MER2_type -2067 961 660 1905 186 0 0 chr1 101643982 101644294 -141020059 - AluJo SINE Alu 0 312 1 4428 130 66 26 chr1 101644294 101644324 -141020029 - Tigger3b DNA MER2_type -2368 660 633 1859 73 147 7 chr1 101644324 101644596 -141019757 - AluY SINE Alu -1 310 1 2155 106 33 3 chr1 101644597 101644898 -141019455 - AluSx SINE Alu -2 310 1 4428 130 66 26 chr1 101644898 101645473 -141018880 - Tigger3b DNA MER2_type -2394 634 1 1697 138 0 8 chr1 101645524 101645771 -141018582 - AluSx SINE Alu -67 245 1 1342 243 15 32 chr1 101645782 101646251 -141018102 - L1M4 LINE L1 -2189 3957 3497 512 278 26 5 chr1 101646279 101646473 -141017880 - L1ME1 LINE L1 -7 6159 5962 402 92 8 133 chr1 101646470 101646543 -141017810 - L1M LINE L1 -955 5389 5335 * 852 167 0 0 chr1 101646543 101646675 -141017678 - FLAM_A SINE Alu 0 133 2 402 92 8 133 chr1 101646675 101646721 -141017632 - L1M LINE L1 -1009 5335 5285 * 996 185 39 8 chr1 101646710 101646964 -141017389 - L1ME1 LINE L1 -187 5977 5716 2445 76 0 0 chr1 101646972 101647262 -141017091 - AluSc SINE Alu -19 290 1 2126 133 0 3 chr1 101647262 101647570 -141016783 - AluSx SINE Alu -5 307 1 1963 238 44 13 chr1 101647713 101648344 -141016009 - L1ME1 LINE L1 -1155 4991 4341 994 35 0 0 chr1 101648392 101648508 -141015845 + AluY SINE Alu 192 307 -4 301 269 128 0 chr1 101649123 101649201 -141015152 + L2 LINE L2 3224 3311 -2 543 155 0 21 chr1 101649210 101649307 -141015046 + FRAM SINE Alu 70 164 -12 617 237 0 8 chr1 101649313 101649431 -141014922 + FLAM_C SINE Alu 1 117 -16 32 0 0 0 chr1 101649615 101649647 -141014706 + AT_rich Low_complexity Low_complexity 1 32 0 1885 115 52 0 chr1 101652261 101652565 -141011788 - AluSx SINE Alu 0 318 1 2295 83 0 35 chr1 101652818 101652988 -141011365 - AluSq SINE Alu -10 303 147 2429 71 0 0 chr1 101652988 101653282 -141011071 - AluY SINE Alu -17 294 1 2295 83 0 35 chr1 101653282 101653425 -141010928 - AluSq SINE Alu -166 147 1 29 70 0 0 chr1 101653808 101653865 -141010488 + AT_rich Low_complexity Low_complexity 1 57 0 1460 196 25 18 chr1 101653939 101654215 -141010138 + AluJo SINE Alu 27 304 -8 1273 236 15 56 chr1 101654660 101655050 -141009303 - MLT1A2 LTR MaLR 0 374 1 495 148 0 0 chr1 101655063 101655144 -141009209 - AluJ/FRAM SINE Alu -6 306 226 * 617 156 0 0 chr1 101655139 101655229 -141009124 + AluJo/FRAM SINE Alu 204 293 -19 384 119 0 0 chr1 101655244 101655303 -141009050 + (CA)n Simple_repeat Simple_repeat 2 60 0 2170 123 0 16 chr1 101655398 101655708 -141008645 - AluSx SINE Alu -7 305 1 1367 278 135 55 chr1 101705881 101707241 -140957112 - L1M4 LINE L1 -1250 4896 3392 2309 75 0 3 chr1 101707241 101707533 -140956820 + AluY SINE Alu 1 291 -20 1367 278 135 55 chr1 101707533 101707733 -140956620 - L1M4 LINE L1 -2754 3392 3210 578 275 60 64 chr1 101707736 101708220 -140956133 - L1M4 LINE L1 -3193 2953 2472 287 231 17 51 chr1 101708225 101708342 -140956011 - L1M4 LINE L1 -3633 2513 2401 1552 193 33 10 chr1 101708388 101708689 -140955664 - AluJb SINE Alu -4 308 1 300 282 45 36 chr1 101708689 101708791 -140955562 - L1M4 LINE L1 -3835 2311 2206 23 54 0 0 chr1 101709627 101709664 -140954689 + AT_rich Low_complexity Low_complexity 1 37 0 621 235 9 0 chr1 101709704 101709819 -140954534 + FLAM_A SINE Alu 1 116 -17 207 69 0 0 chr1 101709869 101709898 -140954455 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1298 167 22 37 chr1 101710221 101710490 -140953863 - MLT2B1 LTR ERVL -253 267 3 965 301 79 24 chr1 101710508 101710926 -140953427 - MLT1J2 LTR MaLR 0 450 10 1756 177 10 10 chr1 101710926 101711226 -140953127 - AluJo SINE Alu -12 300 1 400 262 71 0 chr1 101711227 101711353 -140953000 + MIR3 SINE MIR 74 208 0 252 227 193 23 chr1 101711834 101711922 -140952431 + L2 LINE L2 3156 3258 -55 2422 70 17 0 chr1 101712057 101712357 -140951996 - AluSx SINE Alu -7 305 1 858 283 4 21 chr1 101712968 101713208 -140951145 - MIR SINE MIR 0 262 27 2347 100 17 0 chr1 101713799 101714098 -140950255 + AluSx SINE Alu 3 306 -6 351 278 39 69 chr1 101714788 101715124 -140949229 + L1M4 LINE L1 1611 2084 -4741 1993 95 92 0 chr1 101715124 101715408 -140948945 + AluSp SINE Alu 1 310 -3 1586 173 10 17 chr1 101715581 101715882 -140948471 + AluJb SINE Alu 5 303 -9 184 173 135 19 chr1 101716232 101716284 -140948069 + MIR SINE MIR 203 260 -2 32 43 0 0 chr1 101716285 101716331 -140948022 + AT_rich Low_complexity Low_complexity 1 46 0 341 217 96 0 chr1 101716480 101716563 -140947790 + MIR3 SINE MIR 64 154 -54 192 77 0 0 chr1 101716636 101716662 -140947691 + (A)n Simple_repeat Simple_repeat 1 26 0 230 206 0 88 chr1 101717617 101717685 -140946668 + L1ME4a LINE L1 5959 6020 -101 242 128 43 0 chr1 101717780 101717827 -140946526 + GA-rich Low_complexity Low_complexity 2 50 0 626 237 92 34 chr1 101717971 101718233 -140946120 + L1ME3 LINE L1 5674 5950 -212 276 231 29 0 chr1 101718233 101718337 -140946016 + (TA)n Simple_repeat Simple_repeat 1 107 0 23 0 0 0 chr1 101718738 101718761 -140945592 + AT_rich Low_complexity Low_complexity 1 23 0 417 193 0 45 chr1 101720274 101720362 -140943991 - L2 LINE L2 0 3313 3230 338 213 12 25 chr1 101720379 101720459 -140943894 + L2 LINE L2 3231 3309 -4 309 313 102 17 chr1 101720727 101720903 -140943450 - MIR3 SINE MIR -4 204 14 312 242 75 83 chr1 101721630 101721750 -140942603 + L2 LINE L2 3154 3272 0 210 118 0 0 chr1 101723228 101723262 -140941091 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 246 88 0 0 chr1 101723263 101723297 -140941056 - L1PA10 LINE L1 -11 6157 6124 898 130 0 0 chr1 101728673 101728788 -140935565 - FLAM_C SINE Alu -17 116 2 371 244 78 16 chr1 101728998 101729155 -140935198 + MIR SINE MIR 15 175 -66 2341 103 0 0 chr1 101729164 101729464 -140934889 - AluSg SINE Alu -10 300 1 30 27 0 0 chr1 101729576 101729613 -140934740 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr1 101729815 101729855 -140934498 + AT_rich Low_complexity Low_complexity 1 40 0 563 293 48 4 chr1 101729893 101730122 -140934231 - L1ME LINE L1 -299 5822 5584 243 227 84 34 chr1 101731889 101732008 -140932345 - L1ME4a LINE L1 -27 6094 5970 288 271 65 50 chr1 101732034 101732233 -140932120 - L1ME4a LINE L1 -313 5808 5607 771 164 16 8 chr1 101732270 101732398 -140931955 - FLAM_C SINE Alu -14 129 1 310 265 12 0 chr1 101732398 101732481 -140931872 - L1ME4a LINE L1 -502 5619 5536 855 207 142 30 chr1 101732514 101732746 -140931607 + MIR SINE MIR 2 259 -3 262 291 53 17 chr1 101732789 101732922 -140931431 - MIR SINE MIR -45 163 23 2451 90 0 0 chr1 101733021 101733332 -140931021 - AluSx SINE Alu -1 311 1 2230 102 0 0 chr1 101733625 101733953 -140930400 + AluSx SINE Alu 1 328 0 198 342 81 67 chr1 101734281 101734430 -140929923 - L2 LINE L2 -10 3303 3153 458 168 0 11 chr1 101734867 101734962 -140929391 + CT-rich Low_complexity Low_complexity 3 96 0 24 32 0 0 chr1 101735944 101735975 -140928378 + AT_rich Low_complexity Low_complexity 1 31 0 1151 155 0 0 chr1 101736143 101736311 -140928042 - AluSg/x SINE Alu -11 301 134 2174 125 0 7 chr1 101736311 101736614 -140927739 - AluSq SINE Alu -12 301 1 2292 39 18 0 chr1 101736614 101736896 -140927457 - HERVL-A2 LTR ERVL -5367 287 1 3231 97 51 0 chr1 101736896 101736938 -140927415 - MLT2A2 LTR ERVL 0 453 415 312 70 0 0 chr1 101736938 101736981 -140927372 + (CA)n Simple_repeat Simple_repeat 2 44 0 3231 97 51 0 chr1 101736981 101737369 -140926984 - MLT2A2 LTR ERVL -38 415 1 929 48 0 32 chr1 101737693 101737817 -140926536 - L1PA8 LINE L1 -1 6171 6052 554 232 32 32 chr1 101737849 101738034 -140926319 - L1MC5 LINE L1 -74 7887 7703 * 6308 91 24 2 chr1 101738031 101739010 -140925343 + L1PA10 LINE L1 5141 6137 -31 1854 154 50 3 chr1 101739146 101739444 -140924909 + AluJb SINE Alu 1 312 0 2388 110 18 94 chr1 101739561 101740008 -140924345 - L1MA8 LINE L1 -6 6285 5873 1204 122 68 0 chr1 101740462 101740667 -140923686 + L1MD3 LINE L1 7777 7995 0 * 2150 157 27 16 chr1 101740663 101741201 -140923152 + L1MB7 LINE L1 4945 5490 -684 534 133 10 0 chr1 101741203 101741301 -140923052 + L1MA7 LINE L1 6193 6291 0 3922 136 33 39 chr1 101741334 101741462 -140922891 + L1MB7 LINE L1 5488 5615 -569 2464 70 0 0 chr1 101741462 101741761 -140922592 + AluY SINE Alu 1 299 -12 3922 136 33 39 chr1 101741761 101742332 -140922021 + L1MB7 LINE L1 5615 6183 -1 1159 258 38 57 chr1 101742410 101742445 -140921908 + MLT1I LTR MaLR 102 136 -273 2357 95 13 0 chr1 101742445 101742569 -140921784 + AluSg SINE Alu 1 122 -188 441 0 0 0 chr1 101742569 101742618 -140921735 + (CA)n Simple_repeat Simple_repeat 2 50 0 2357 95 13 0 chr1 101742618 101742799 -140921554 + AluSg SINE Alu 122 310 0 1159 258 38 57 chr1 101742799 101743077 -140921276 + MLT1I LTR MaLR 136 409 0 184 236 109 18 chr1 101743354 101743409 -140920944 - L2 LINE L2 -18 3295 3236 217 276 17 0 chr1 101745077 101745135 -140919218 + MIR SINE MIR 28 86 -176 845 205 285 9 chr1 101745200 101745537 -140918816 - L2 LINE L2 0 3313 2884 966 131 0 0 chr1 101745729 101745859 -140918494 - FLAM_C SINE Alu -2 131 2 3294 157 61 57 chr1 101745896 101746615 -140917738 - L1MB4 LINE L1 -34 6146 5425 198 167 0 0 chr1 101746672 101746708 -140917645 + (TG)n Simple_repeat Simple_repeat 2 37 0 746 180 0 16 chr1 101746726 101746854 -140917499 - FLAM_C SINE Alu -6 127 2 432 0 0 0 chr1 101746856 101746904 -140917449 + (TG)n Simple_repeat Simple_repeat 2 49 0 1089 146 40 71 chr1 101747064 101747290 -140917063 + MER20 DNA MER1_type 1 219 0 2259 71 18 0 chr1 101747639 101747921 -140916432 + AluSp SINE Alu 1 287 -26 2196 98 7 3 chr1 101748091 101748387 -140915966 - AluSx SINE Alu -11 301 5 21 0 0 0 chr1 101748720 101748741 -140915612 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr1 101749169 101749196 -140915157 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1031 156 0 24 chr1 101749253 101749420 -140914933 - FAM SINE Alu -11 174 12 1497 171 23 0 chr1 101750342 101750600 -140913753 - MER58B DNA MER1_type 0 341 78 2189 121 13 3 chr1 101750926 101751232 -140913121 + AluSx SINE Alu 2 310 -2 283 223 17 23 chr1 101751283 101751312 -140913041 + MIR SINE MIR 35 63 -145 826 146 0 23 chr1 101751312 101751442 -140912911 + FLAM_C SINE Alu 2 128 -5 283 223 17 23 chr1 101751442 101751492 -140912861 + MIR SINE MIR 63 110 -98 2297 115 0 3 chr1 101752624 101752936 -140911417 + AluSx SINE Alu 1 311 -1 534 31 0 0 chr1 101753270 101753334 -140911019 + (TA)n Simple_repeat Simple_repeat 2 65 0 384 252 81 76 chr1 101753847 101753907 -140910446 - MIR SINE MIR 0 262 204 2165 114 0 23 chr1 101753907 101754215 -140910138 - AluJb SINE Alu -11 301 1 384 252 81 76 chr1 101754215 101754364 -140909989 - MIR SINE MIR -58 204 52 672 201 149 9 chr1 101754365 101754579 -140909774 - L1MC5 LINE L1 -51 7910 7667 721 292 161 16 chr1 101756276 101756519 -140907834 - MER115 DNA AcHobo -369 324 47 1961 169 43 0 chr1 101756861 101757187 -140907166 - MER2 DNA MER2_type -2 342 3 1890 145 3 29 chr1 101757645 101757956 -140906397 - AluJb SINE Alu -8 304 2 412 261 78 20 chr1 101758217 101758370 -140905983 + HAL1 LINE L1 713 874 -1633 1070 214 82 79 chr1 101758442 101758798 -140905555 + HAL1 LINE L1 1300 1656 -851 845 219 88 75 chr1 101758869 101759244 -140905109 + HAL1 LINE L1 1663 2042 -465 1555 169 111 33 chr1 101759289 101759369 -140904984 + L1MB8 LINE L1 5783 5855 -323 2224 120 0 10 chr1 101759369 101759677 -140904676 + AluSx SINE Alu 1 305 -7 1555 169 111 33 chr1 101759677 101759958 -140904395 + L1MB8 LINE L1 5855 6172 -6 346 201 164 38 chr1 101760168 101760327 -140904026 + HAL1 LINE L1 2137 2315 -192 2046 145 0 10 chr1 101760327 101760630 -140903723 + AluJo SINE Alu 1 300 -12 1956 151 0 3 chr1 101760717 101761021 -140903332 - AluJb SINE Alu -9 303 1 2381 94 0 3 chr1 101761167 101761466 -140902887 + AluSx SINE Alu 1 298 -14 305 280 153 65 chr1 101761659 101762115 -140902238 - L1ME4a LINE L1 -74 6047 5534 2139 104 17 0 chr1 101762115 101762413 -140901940 + AluSg SINE Alu 2 304 -6 305 280 153 65 chr1 101762413 101762499 -140901854 - L1ME4a LINE L1 -587 5534 5457 1604 215 3 7 chr1 101762529 101762817 -140901536 - AluJo SINE Alu -15 287 1 749 189 33 0 chr1 101762827 101762949 -140901404 - FLAM_C SINE Alu -7 126 1 261 284 37 0 chr1 101762978 101763059 -140901294 - L1MC5 LINE L1 -66 7895 7812 42 0 0 0 chr1 101763176 101763218 -140901135 + AT_rich Low_complexity Low_complexity 1 42 0 2251 115 0 34 chr1 101763562 101763885 -140900468 + AluSx SINE Alu 1 312 0 330 269 74 19 chr1 101763912 101764020 -140900333 - MER5A DNA MER1_type -50 139 26 2013 137 7 10 chr1 101764587 101764887 -140899466 - AluSx SINE Alu -13 299 1 2023 144 7 0 chr1 101765026 101765325 -140899028 - AluSx SINE Alu -11 301 1 1937 165 0 0 chr1 101765818 101766115 -140898238 - AluJb SINE Alu -15 297 1 2526 163 37 23 chr1 101766307 101766792 -140897561 + L1MC2 LINE L1 5844 6335 -9 2091 147 0 0 chr1 101766889 101767201 -140897152 + AluSx SINE Alu 1 312 0 1865 242 99 16 chr1 101767239 101767797 -140896556 - L1ME3 LINE L1 -1 6161 5558 1450 267 57 7 chr1 101767945 101768075 -140896278 + L1ME3 LINE L1 5492 5614 -548 516 244 81 8 chr1 101768075 101768198 -140896155 - MER94 DNA DNA 0 134 3 1450 267 57 7 chr1 101768198 101768524 -140895829 + L1ME3 LINE L1 5614 5971 -191 1546 101 22 38 chr1 101768636 101768903 -140895450 - AluSq SINE Alu -50 263 1 3411 172 45 22 chr1 101768904 101769304 -140895049 - L1MB4 LINE L1 -289 5891 5502 796 143 0 60 chr1 101769304 101769437 -140894916 - FLAM_C SINE Alu -8 125 1 3411 172 45 22 chr1 101769437 101769496 -140894857 - L1MB4 LINE L1 -678 5502 5446 2352 81 30 0 chr1 101769496 101769793 -140894560 - AluSg SINE Alu -4 306 1 3411 172 45 22 chr1 101769793 101770322 -140894031 - L1MB4 LINE L1 -734 5446 4884 338 234 64 21 chr1 101770682 101770776 -140893577 - MIR SINE MIR -27 235 138 * 463 288 39 7 chr1 101770772 101770925 -140893428 + MIR SINE MIR 102 259 -3 2232 101 10 0 chr1 101771545 101771842 -140892511 + AluSx SINE Alu 3 302 -10 1253 138 0 0 chr1 101771851 101772032 -140892321 + AluSg/x SINE Alu 123 303 -9 359 321 92 8 chr1 101773139 101773270 -140891083 - MIR3 SINE MIR -45 163 22 2361 103 0 0 chr1 101773664 101773976 -140890377 - AluSx SINE Alu 0 312 1 2200 89 0 0 chr1 101774118 101774398 -140889955 - AluSx SINE Alu -32 280 1 398 213 80 73 chr1 101774616 101774766 -140889587 + MIR SINE MIR 25 175 -87 235 228 15 132 chr1 101776235 101776330 -140888023 - MER96B DNA MER1_type? 0 417 340 2113 110 4 0 chr1 101776330 101776650 -140887703 - AluSx SINE Alu 0 321 1 235 228 15 132 chr1 101776650 101776689 -140887664 - MER96B DNA MER1_type? -77 340 298 321 221 0 67 chr1 101776813 101776870 -140887483 - MER46A DNA MER2_type -43 193 144 1101 139 42 0 chr1 101776870 101777035 -140887318 + Tigger4(Zombi) DNA MER2_type 2 173 -2558 * 1856 98 38 54 chr1 101777033 101777156 -140887197 + Tigger4(Zombi) DNA MER2_type 2422 2545 -186 2211 92 20 3 chr1 101777156 101777449 -140886904 + AluSx SINE Alu 1 298 -14 1856 98 38 54 chr1 101777449 101777557 -140886796 + Tigger4(Zombi) DNA MER2_type 2545 2649 -82 225 0 0 0 chr1 101777557 101777582 -140886771 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1856 98 38 54 chr1 101777582 101777664 -140886689 + Tigger4(Zombi) DNA MER2_type 2649 2731 0 414 208 10 50 chr1 101777664 101777765 -140886588 - MER96B DNA MER1_type? -318 99 3 426 240 186 9 chr1 101777871 101778016 -140886337 + MIR3 SINE MIR 30 199 -9 440 272 79 0 chr1 101778271 101778385 -140885968 - MIR3 SINE MIR -76 132 10 210 37 0 0 chr1 101778621 101778648 -140885705 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 811 144 29 75 chr1 101778737 101778800 -140885553 - MIR SINE MIR -83 179 115 2205 121 3 3 chr1 101778800 101779106 -140885247 + AluSg SINE Alu 1 306 -4 811 144 29 75 chr1 101779106 101779215 -140885138 - MIR SINE MIR -147 115 15 223 373 10 0 chr1 101779249 101779351 -140885002 - L3 LINE CR1 -110 1467 1365 1367 189 73 15 chr1 101779716 101780000 -140884353 + AluJb SINE Alu 9 307 0 257 298 12 68 chr1 101780055 101780216 -140884137 + L1MC1 LINE L1 5735 5886 -1922 1657 150 12 78 chr1 101780222 101780542 -140883811 + AluJo SINE Alu 1 299 -13 41534 67 6 3 chr1 101780545 101786669 -140877684 + L1PA5 LINE L1 13 6154 0 34 55 0 0 chr1 101786681 101786736 -140877617 + AT_rich Low_complexity Low_complexity 1 55 0 611 144 11 0 chr1 101787265 101787355 -140876998 + L1MC1 LINE L1 6225 6315 -18 225 0 0 0 chr1 101787361 101787386 -140876967 + (TG)n Simple_repeat Simple_repeat 2 26 0 1373 132 0 29 chr1 101787716 101787921 -140876432 + AluSx SINE Alu 1 199 -113 23 0 0 0 chr1 101788101 101788124 -140876229 + AT_rich Low_complexity Low_complexity 1 23 0 2164 75 4 0 chr1 101789014 101789282 -140875071 + AluSc SINE Alu 1 269 -40 2655 183 71 53 chr1 101789383 101789458 -140874895 + L1ME1 LINE L1 5219 5291 -875 2162 129 7 3 chr1 101789458 101789767 -140874586 + AluSx SINE Alu 1 310 -2 2655 183 71 53 chr1 101789767 101790393 -140873960 + L1ME1 LINE L1 5291 5927 -239 1901 78 0 0 chr1 101790406 101790636 -140873717 + AluY SINE Alu 1 230 -81 2393 87 3 6 chr1 101792138 101792450 -140871903 + AluY SINE Alu 1 311 0 1529 70 45 5 chr1 101793266 101793467 -140870886 - L1PA7 LINE L1 -1 6153 5945 1144 181 120 21 chr1 101793729 101794047 -140870306 + MSTD LTR MaLR 1 396 0 1963 143 18 0 chr1 101794387 101794673 -140869680 - AluJo SINE Alu -21 291 1 736 118 0 0 chr1 101794750 101794852 -140869501 - FLAM_A SINE Alu -8 134 33 786 154 83 0 chr1 101794895 101795064 -140869289 - MER33 DNA MER1_type -3 360 178 180 0 0 0 chr1 101795164 101795184 -140869169 + (A)n Simple_repeat Simple_repeat 1 20 0 5996 151 40 35 chr1 101795194 101796352 -140868001 + L1P LINE L1 11 1173 -4973 23 0 0 0 chr1 101796541 101796564 -140867789 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr1 101796940 101796975 -140867378 + AT_rich Low_complexity Low_complexity 1 35 0 304 179 60 0 chr1 101796980 101797047 -140867306 - L1PB4 LINE L1 -7 6149 6079 488 190 21 2 chr1 101797647 101797790 -140866563 - MER58B DNA MER1_type -16 325 30 1341 181 28 28 chr1 101797843 101798092 -140866261 - AluJb SINE Alu -63 249 1 619 281 81 9 chr1 101798632 101798853 -140865500 - MIR SINE MIR -19 243 7 1724 198 8 48 chr1 101799352 101799630 -140864723 + MER2 DNA MER2_type 5 268 -76 1954 141 3 16 chr1 101799630 101799799 -140864554 - AluSx SINE Alu -11 301 136 2158 126 0 0 chr1 101799799 101800100 -140864253 - AluSx SINE Alu -11 301 1 1954 141 3 16 chr1 101800100 101800235 -140864118 - AluSx SINE Alu -176 136 1 1724 198 8 48 chr1 101800235 101800310 -140864043 + MER2 DNA MER2_type 268 344 0 28 0 0 0 chr1 101800650 101800678 -140863675 + AT_rich Low_complexity Low_complexity 1 28 0 1039 123 13 7 chr1 101800678 101800833 -140863520 - L1PB2 LINE L1 -3 6148 5993 280 325 160 5 chr1 101801294 101801488 -140862865 + L2 LINE L2 1872 2095 -1219 650 242 172 11 chr1 101801510 101801696 -140862657 + MER58A DNA MER1_type 9 224 0 1888 141 10 3 chr1 101801910 101802209 -140862144 - AluSx SINE Alu -11 301 1 1725 254 140 13 chr1 101802209 101802886 -140861467 - L2 LINE L2 -2236 1078 316 312 305 245 0 chr1 101802889 101803040 -140861313 - L2 LINE L2 -3110 204 17 4183 177 37 19 chr1 101803286 101804036 -140860317 - MER21B LTR ERV1 -99 764 1 238 321 170 12 chr1 101804255 101804420 -140859933 - L2 LINE L2 -753 2561 2371 608 250 73 32 chr1 101804443 101804691 -140859662 - L1MC5 LINE L1 -44 7917 7660 1765 166 0 7 chr1 101804714 101805004 -140859349 - AluJb SINE Alu -24 288 1 228 209 30 0 chr1 101805084 101805151 -140859202 + (TA)n Simple_repeat Simple_repeat 1 69 0 1781 157 3 18 chr1 101805151 101805437 -140858916 - AluJb SINE Alu -24 288 7 237 298 154 17 chr1 101805536 101805828 -140858525 - L2 LINE L2 -1230 2084 1753 291 368 43 0 chr1 101805972 101806089 -140858264 - MIR3 SINE MIR -6 202 81 677 214 224 9 chr1 101806116 101806326 -140858027 - MER112 DNA MER1_type 0 256 2 1918 139 4 0 chr1 101806372 101806646 -140857707 - AluSx SINE Alu -37 275 1 204 156 22 0 chr1 101806654 101806699 -140857654 + (TTA)n Simple_repeat Simple_repeat 3 48 0 280 183 33 0 chr1 101807236 101807296 -140857057 + MIR3 SINE MIR 140 201 -7 585 129 0 0 chr1 101807630 101807723 -140856630 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 2453 79 0 0 chr1 101807808 101808099 -140856254 - AluSc SINE Alu -17 292 2 2056 151 0 7 chr1 101808279 101808584 -140855769 - AluSx SINE Alu -9 303 1 2110 113 3 7 chr1 101809563 101809856 -140854497 + AluSx SINE Alu 21 312 0 1927 140 14 7 chr1 101809873 101810158 -140854195 + AluSx SINE Alu 1 287 -25 39 22 0 0 chr1 101810158 101810204 -140854149 + AT_rich Low_complexity Low_complexity 1 46 0 587 131 24 18 chr1 101810205 101810373 -140853980 + (TA)n Simple_repeat Simple_repeat 2 170 0 440 300 104 18 chr1 101812141 101812361 -140851992 + MIR SINE MIR 11 249 -13 295 366 13 0 chr1 101812887 101813040 -140851313 - L1ME3 LINE L1 -28 6134 5980 20169 77 12 7 chr1 101813151 101816658 -140847695 + L1PA7 LINE L1 2451 5967 -187 6265 166 44 31 chr1 101816758 101817737 -140846616 - L1 LINE L1 -1862 4284 3319 1786 162 3 33 chr1 101817737 101818039 -140846314 - AluJo SINE Alu -19 293 1 6265 166 44 31 chr1 101818039 101818149 -140846204 - L1 LINE L1 -2827 3319 3212 2251 125 0 0 chr1 101818149 101818461 -140845892 - AluSx SINE Alu 0 312 1 6265 166 44 31 chr1 101818461 101818703 -140845650 - L1 LINE L1 -2934 3212 2935 2330 98 0 0 chr1 101819669 101819965 -140844388 + AluSg SINE Alu 1 296 -14 182 114 0 29 chr1 101820036 101820071 -140844282 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 1870 101 13 42 chr1 101820073 101820380 -140843973 + L1MA8 LINE L1 5644 5941 -350 1026 153 12 0 chr1 101820390 101820553 -140843800 + FRAM SINE Alu 1 165 -1 1021 94 25 0 chr1 101820629 101820788 -140843565 + L1MA8 LINE L1 6125 6287 -4 1520 154 42 46 chr1 101821276 101821561 -140842792 + AluJo SINE Alu 1 284 -28 488 301 216 26 chr1 101821646 101822025 -140842328 - L2 LINE L2 -9 3304 2854 1037 98 0 0 chr1 101822258 101822391 -140841962 + AluSq/x SINE Alu 1 133 -179 198 0 0 0 chr1 101822391 101822413 -140841940 + (A)n Simple_repeat Simple_repeat 1 22 0 217 415 9 9 chr1 101822517 101822623 -140841730 + L2 LINE L2 2985 3090 -182 2316 110 3 0 chr1 101822709 101823017 -140841336 - AluSp SINE Alu -4 309 1 248 306 0 0 chr1 101823040 101823089 -140841264 + L2 LINE L2 3134 3182 -90 342 111 0 19 chr1 101823193 101823247 -140841106 - Alu SINE Alu -246 56 4 876 170 94 0 chr1 101823277 101823448 -140840905 - MIR SINE MIR -40 222 36 481 251 63 46 chr1 101824303 101824478 -140839875 + MIR SINE MIR 34 211 -51 741 155 7 1 chr1 101825018 101825151 -140839202 - L1MB3 LINE L1 0 6174 6035 532 215 118 48 chr1 101825162 101825208 -140839145 - MIR SINE MIR -54 154 113 2255 94 7 3 chr1 101825208 101825507 -140838846 - AluSg SINE Alu -10 300 1 532 215 118 48 chr1 101825507 101825645 -140838708 - MIR SINE MIR -95 113 13 186 167 0 0 chr1 101826251 101826287 -140838066 + (TA)n Simple_repeat Simple_repeat 2 37 0 1732 159 96 3 chr1 101827174 101827507 -140836846 + Tigger1 DNA MER2_type 1 364 -2054 264 314 69 53 chr1 101828071 101828259 -140836094 - L1ME3A LINE L1 -8 6162 5972 22 0 0 0 chr1 101828408 101828430 -140835923 + AT_rich Low_complexity Low_complexity 1 22 0 1177 141 112 0 chr1 101828444 101828650 -140835703 - AluJo SINE Alu -83 229 1 798 245 182 57 chr1 101828651 101828841 -140835512 - L1ME3A LINE L1 -277 5885 5720 2223 115 69 10 chr1 101828841 101829231 -140835122 - L1MB3 LINE L1 -7 6176 5764 798 245 182 57 chr1 101829231 101829778 -140834575 - L1ME3A LINE L1 -442 5720 5243 2458 60 0 3 chr1 101829778 101830077 -140834276 - AluY SINE Alu -11 300 3 1799 149 7 7 chr1 101830086 101830375 -140833978 - AluSx SINE Alu -22 290 2 798 245 182 57 chr1 101830375 101830641 -140833712 - L1ME3A LINE L1 -926 5236 4774 464 278 17 29 chr1 101831291 101831464 -140832889 + MIR SINE MIR 92 262 0 31 76 0 0 chr1 101831586 101831652 -140832701 + AT_rich Low_complexity Low_complexity 1 66 0 809 108 50 0 chr1 101832189 101832309 -140832044 - FLAM_C SINE Alu -7 126 1 1034 103 57 0 chr1 101832317 101832492 -140831861 - L1MA7 LINE L1 -5 6286 6102 34 24 0 0 chr1 101832933 101832974 -140831379 + AT_rich Low_complexity Low_complexity 1 41 0 780 169 0 15 chr1 101832974 101833110 -140831243 - FLAM_C SINE Alu -9 134 1 460 262 73 42 chr1 101833341 101833532 -140830821 + L2 LINE L2 3117 3313 0 1920 119 106 3 chr1 101834132 101834444 -140829909 + MER7A DNA MER2_type 1 342 -4 854 150 0 0 chr1 101837188 101837321 -140827032 + FLAM_C SINE Alu 1 133 0 1825 124 79 28 chr1 101837816 101838170 -140826183 + THE1C LTR MaLR 4 375 0 606 284 171 5 chr1 101838556 101838778 -140825575 - MIR SINE MIR 0 262 4 359 280 101 75 chr1 101838837 101839265 -140825088 - L2 LINE L2 -833 2481 2043 2122 126 7 0 chr1 101839461 101839762 -140824591 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr1 101839842 101839870 -140824483 + AT_rich Low_complexity Low_complexity 1 28 0 931 110 225 11 chr1 101839892 101840083 -140824270 + Tigger7 DNA MER2_type 2356 2587 0 2524 101 52 24 chr1 101840185 101840609 -140823744 - L1MA1 LINE L1 0 6302 5867 36 0 0 21 chr1 101841180 101841202 -140823151 + AT_rich Low_complexity Low_complexity 1 22 -24 1583 194 7 7 chr1 101841202 101841491 -140822862 + AluJo SINE Alu 1 289 -23 36 0 0 21 chr1 101841491 101841515 -140822838 + AT_rich Low_complexity Low_complexity 22 46 0 517 180 62 31 chr1 101841792 101841920 -140822433 + MER33 DNA MER1_type 33 164 -160 1784 75 26 0 chr1 101842020 101842296 -140822057 - L1M1 LINE L1 -743 5403 5237 1764 152 21 0 chr1 101842323 101842606 -140821747 - AluJb SINE Alu -23 289 1 186 384 105 0 chr1 101842630 101842716 -140821637 + L2 LINE L2 3203 3297 -16 216 339 15 0 chr1 101843677 101843742 -140820611 + MER5A DNA MER1_type 80 145 -44 190 379 95 17 chr1 101843710 101843826 -140820527 - MIR3 SINE MIR -29 179 55 * 212 196 22 22 chr1 101844849 101844895 -140819458 + L2 LINE L2 3261 3306 -7 407 210 160 0 chr1 101845532 101845632 -140818721 - MER104 DNA Tc2 -30 150 35 23 0 0 0 chr1 101846127 101846150 -140818203 + AT_rich Low_complexity Low_complexity 1 23 0 802 227 22 27 chr1 101846150 101846335 -140818018 + AluJo SINE Alu 2 185 -127 452 238 76 41 chr1 101846703 101846875 -140817478 + MER5B DNA MER1_type 1 178 0 1087 133 0 13 chr1 101847517 101847675 -140816678 + FRAM SINE Alu 1 153 -23 1840 100 0 0 chr1 101849517 101849757 -140814596 + AluSg SINE Alu 56 295 -15 1325 204 15 68 chr1 101850640 101850964 -140813389 - AluJo SINE Alu -1 311 5 2118 133 0 3 chr1 101851237 101851546 -140812807 - AluSx SINE Alu -2 310 3 1821 151 7 17 chr1 101852068 101852359 -140811994 - AluJb SINE Alu -24 288 1 531 328 162 57 chr1 101852373 101854093 -140810260 - L2 LINE L2 -1113 2201 301 1780 162 0 35 chr1 101854543 101854857 -140809496 + AluJb SINE Alu 1 303 -9 226 296 25 49 chr1 101855374 101855455 -140808898 - MIR SINE MIR -163 99 21 1897 186 69 129 chr1 101855916 101856618 -140807735 - MLT1E1 LTR MaLR 0 654 3 735 300 80 58 chr1 101857104 101857545 -140806808 + L2 LINE L2 2559 3014 -299 38 0 0 0 chr1 101857595 101857633 -140806720 + AT_rich Low_complexity Low_complexity 1 38 0 544 315 97 13 chr1 101857765 101858003 -140806350 - MIR SINE MIR 0 262 5 2197 160 108 9 chr1 101858030 101858455 -140805898 - MLT1C LTR MaLR 0 467 1 211 220 0 20 chr1 101858456 101858506 -140805847 + (TATG)n Simple_repeat Simple_repeat 4 52 0 21 0 0 0 chr1 101859076 101859097 -140805256 + AT_rich Low_complexity Low_complexity 1 21 0 1669 161 62 3 chr1 101859097 101859388 -140804965 + AluJb SINE Alu 1 308 -4 21 0 0 0 chr1 101860139 101860160 -140804193 + AT_rich Low_complexity Low_complexity 1 21 0 2308 94 0 3 chr1 101860787 101861094 -140803259 + AluSg SINE Alu 1 306 -4 1765 173 10 3 chr1 101861594 101861894 -140802459 - AluJb SINE Alu -10 302 1 202 222 0 74 chr1 101862287 101862341 -140802012 - MIR SINE MIR -83 125 76 389 238 25 113 chr1 101863945 101864185 -140800168 - L1MC5 LINE L1 -27 7934 7716 518 205 35 105 chr1 101864220 101864420 -140799933 - L1ME2 LINE L1 -10 6154 5969 687 181 7 34 chr1 101864442 101864591 -140799762 - AluJb SINE Alu -25 287 143 278 279 108 8 chr1 101864593 101864722 -140799631 - MIR SINE MIR -89 173 32 810 184 13 25 chr1 101865141 101865299 -140799054 - FRAM SINE Alu -3 173 18 772 180 58 23 chr1 101865903 101866075 -140798278 + MER5B DNA MER1_type 1 178 0 198 284 10 69 chr1 101866239 101866341 -140798012 - L2 LINE L2 -181 3091 2996 529 341 170 20 chr1 101866439 101866975 -140797378 - L2 LINE L2 -468 2846 2231 495 348 110 45 chr1 101867080 101867361 -140796992 + L2 LINE L2 1061 1322 -1992 2383 102 19 118 chr1 101867361 101867843 -140796510 - Tigger2a DNA MER2_type 0 434 1 495 348 110 45 chr1 101867843 101868271 -140796082 + L2 LINE L2 1322 1816 -1498 22 35 0 0 chr1 101869715 101869744 -140794609 + AT_rich Low_complexity Low_complexity 1 29 0 392 288 51 8 chr1 101870027 101870145 -140794208 - L2 LINE L2 -10 3303 3181 305 172 16 0 chr1 101870279 101870343 -140794010 + (TA)n Simple_repeat Simple_repeat 2 66 0 234 333 50 25 chr1 101871066 101871186 -140793167 + L2 LINE L2 1845 1967 -1347 276 318 194 20 chr1 101871301 101871502 -140792851 + MIR SINE MIR 21 256 -6 2248 128 0 0 chr1 101871802 101872114 -140792239 + AluSq SINE Alu 2 313 0 1649 161 43 40 chr1 101872534 101872833 -140791520 + AluJo SINE Alu 1 300 -12 379 290 131 18 chr1 101872987 101873277 -140791076 - L2 LINE L2 -209 3063 2738 663 160 0 0 chr1 101873383 101873489 -140790864 + FRAM SINE Alu 54 159 -17 1936 146 17 3 chr1 101873589 101873884 -140790469 + AluSx SINE Alu 1 299 -13 252 302 85 28 chr1 101874188 101874294 -140790059 + L2 LINE L2 3185 3296 -17 261 57 0 0 chr1 101874295 101874330 -140790023 + (TG)n Simple_repeat Simple_repeat 2 36 0 1173 122 0 18 chr1 101874335 101874499 -140789854 - AluSg/x SINE Alu -10 302 142 2306 106 3 3 chr1 101876170 101876472 -140787881 - AluSx SINE Alu -10 302 1 2035 146 0 0 chr1 101876476 101876784 -140787569 - AluSx SINE Alu 0 308 1 453 36 0 0 chr1 101877037 101877092 -140787261 + (TG)n Simple_repeat Simple_repeat 2 56 0 646 215 5 97 chr1 101878013 101878208 -140786145 - L2 LINE L2 -18 3295 3119 1099 163 92 0 chr1 101878217 101878401 -140785952 + AluJb SINE Alu 87 287 -25 34 24 0 0 chr1 101878443 101878484 -140785869 + AT_rich Low_complexity Low_complexity 1 41 0 2166 131 0 0 chr1 101878488 101878778 -140785575 - AluSx SINE Alu -21 291 2 4854 236 91 43 chr1 101878792 101879042 -140785311 - L2 LINE L2 -241 3072 2835 2079 141 13 16 chr1 101879042 101879418 -140784935 + THE1C LTR MaLR 1 375 0 4854 236 91 43 chr1 101879418 101879493 -140784860 - L2 LINE L2 -478 2835 2765 2201 115 3 3 chr1 101879493 101879797 -140784556 - AluSp SINE Alu -9 304 1 4854 236 91 43 chr1 101879797 101880871 -140783482 - L2 LINE L2 -548 2765 1744 270 0 0 0 chr1 101880871 101880901 -140783452 + (TA)n Simple_repeat Simple_repeat 2 31 0 2149 120 7 3 chr1 101880901 101881192 -140783161 - AluSg SINE Alu -18 292 1 4854 236 91 43 chr1 101881192 101881390 -140782963 - L2 LINE L2 -1568 1745 1394 200 226 19 19 chr1 101881462 101881515 -140782838 - L2 LINE L2 -1933 1381 1329 310 206 0 0 chr1 101881517 101881580 -140782773 - MLT1A1 LTR MaLR 0 365 303 2378 70 7 0 chr1 101882098 101882398 -140781955 - AluSg SINE Alu -8 302 1 191 259 94 12 chr1 101882913 101882998 -140781355 - MIR3 SINE MIR -28 180 89 559 123 9 26 chr1 101883134 101883248 -140781105 - L1PA15 LINE L1 0 6165 6054 277 221 59 29 chr1 101883354 101883422 -140780931 - MIR SINE MIR -57 151 82 304 202 202 0 chr1 101883819 101883913 -140780440 - L2 LINE L2 0 3313 3201 439 278 35 9 chr1 101883950 101884065 -140780288 + L3 LINE CR1 1336 1453 -124 699 139 0 0 chr1 101884074 101884182 -140780171 - AluSg/x SINE Alu -1 308 201 2695 109 73 113 chr1 101884182 101884237 -140780116 - L1MC3 LINE L1 -629 7156 7100 981 209 0 0 chr1 101884237 101884400 -140779953 - FAM SINE Alu -12 163 1 2695 109 73 113 chr1 101884400 101884928 -140779425 - L1MC3 LINE L1 -685 7100 6601 1867 154 77 3 chr1 101884928 101885252 -140779101 - MER7A DNA MER2_type 0 346 1 2695 109 73 113 chr1 101885252 101885348 -140779005 - L1MC3 LINE L1 -1184 6601 6503 562 227 15 8 chr1 101885403 101885535 -140778818 - L1ME LINE L1 -456 5714 5582 545 186 95 2 chr1 101885535 101885667 -140778686 - LTR40b LTR ERVL 0 462 338 2758 97 10 8 chr1 101885687 101886089 -140778264 + L1PA16 LINE L1 5764 6166 0 425 150 0 0 chr1 101886546 101886606 -140777747 + AluS SINE Alu 5 64 -245 9265 108 14 19 chr1 101886706 101888685 -140775668 - L1P3 LINE L1 -3729 2732 750 259 130 101 43 chr1 101888691 101888760 -140775593 - L1PA16 LINE L1 -1 6165 6093 346 125 0 0 chr1 101889431 101889487 -140774866 - MER3 DNA MER1_type -1 208 153 664 215 118 0 chr1 101889487 101889631 -140774722 - FRAM SINE Alu -5 161 1 1957 114 0 18 chr1 101889820 101890101 -140774252 + AluSx SINE Alu 23 298 -14 1773 183 106 52 chr1 101890205 101890821 -140773532 - L1ME LINE L1 -883 5263 4615 655 217 104 50 chr1 101890827 101891067 -140773286 + L1ME1 LINE L1 5909 6161 -5 326 226 146 30 chr1 101891428 101891592 -140772761 + L1ME3A LINE L1 5768 5950 -220 2057 167 71 11 chr1 101891932 101892399 -140771954 + L1MA4A LINE L1 5808 6302 -1 394 267 188 48 chr1 101892647 101892939 -140771414 - L1ME4a LINE L1 -114 6007 5675 1616 222 26 0 chr1 101894845 101895147 -140769206 - AluJb SINE Alu -2 310 1 24 96 0 0 chr1 101896099 101896172 -140768181 + AT_rich Low_complexity Low_complexity 1 73 0 752 196 81 0 chr1 101898041 101898189 -140766164 - MER21B LTR ERV1 -376 487 328 2302 107 0 0 chr1 101898249 101898547 -140765806 + AluSg SINE Alu 1 298 -12 369 216 0 0 chr1 101898692 101898766 -140765587 + MIR SINE MIR 76 149 -113 547 218 97 32 chr1 101899978 101900102 -140764251 - FLAM_A SINE Alu -1 132 1 1731 147 72 0 chr1 101900131 101900396 -140763957 + AluSx SINE Alu 9 292 -20 1539 142 88 0 chr1 101900405 101900706 -140763647 + AluJb SINE Alu 1 324 0 882 172 0 0 chr1 101901070 101901204 -140763149 + AluJo SINE Alu 1 134 -178 21 0 0 0 chr1 101901204 101901225 -140763128 + AT_rich Low_complexity Low_complexity 1 21 0 232 308 47 0 chr1 101901449 101901556 -140762797 + L1ME LINE L1 147 258 -5947 698 155 5 126 chr1 101901815 101901988 -140762365 - MER105 DNA DNA 0 204 58 633 157 87 65 chr1 101901988 101902130 -140762223 + MER53 DNA DNA 1 149 -40 2223 122 3 3 chr1 101902130 101902425 -140761928 - AluSx SINE Alu -17 295 1 633 157 87 65 chr1 101902425 101902467 -140761886 + MER53 DNA DNA 149 189 0 698 155 5 126 chr1 101902467 101902499 -140761854 - MER105 DNA DNA -146 58 24 803 154 21 21 chr1 101903071 101903214 -140761139 + FLAM_C SINE Alu 1 143 0 345 242 0 10 chr1 101903669 101903768 -140760585 - MER103 DNA DNA -12 154 57 2008 114 10 33 chr1 101903894 101904201 -140760152 + AluSg SINE Alu 1 300 -10 754 61 0 0 chr1 101904399 101904497 -140759856 + L1PA3 LINE L1 1 98 -6048 * 36929 39 4 0 chr1 101904466 101910013 -140754340 + L1PA3 LINE L1 580 6147 -8 954 219 94 31 chr1 101910991 101911311 -140753042 - LTR40b LTR ERVL -2 460 121 474 130 0 110 chr1 101911326 101911350 -140753003 - MER5A DNA MER1_type -100 89 64 1212 187 37 67 chr1 101911350 101911499 -140752854 - AluJo SINE Alu -22 290 153 2411 73 0 13 chr1 101911499 101911799 -140752554 - AluY SINE Alu -15 296 1 1212 187 37 67 chr1 101911799 101911948 -140752405 - AluJo SINE Alu -159 153 1 474 130 0 110 chr1 101911948 101912023 -140752330 - MER5A DNA MER1_type -125 64 1 404 261 57 37 chr1 101912266 101912511 -140751842 - L1M4 LINE L1 -813 5333 5084 592 346 102 42 chr1 101913907 101914564 -140749789 + L1ME LINE L1 1021 1637 -4759 2423 66 13 3 chr1 101914564 101914869 -140749484 - AluY SINE Alu -3 308 1 592 346 102 42 chr1 101914869 101915546 -140748807 + L1ME LINE L1 1637 2435 -3961 306 164 0 0 chr1 101915704 101915759 -140748594 + (TG)n Simple_repeat Simple_repeat 1 55 0 898 212 95 66 chr1 101915767 101916023 -140748330 + L1MEc LINE L1 1952 2199 -4016 428 188 31 0 chr1 101916023 101916119 -140748234 + L1MB7 LINE L1 6067 6165 -19 898 212 95 66 chr1 101916119 101916488 -140747865 + L1MEc LINE L1 2199 2561 -3654 1077 210 83 35 chr1 101916497 101916730 -140747623 + L1MEc LINE L1 2864 3084 -3131 1591 169 44 20 chr1 101916730 101917026 -140747327 + AluJb SINE Alu 1 303 -9 1077 210 83 35 chr1 101917026 101917096 -140747257 + L1MEc LINE L1 3084 3149 -3066 2122 90 41 0 chr1 101917096 101917386 -140746967 + AluSc SINE Alu 1 302 -7 1077 210 83 35 chr1 101917386 101917515 -140746838 + L1MEc LINE L1 3149 3318 -2897 1046 211 14 14 chr1 101917514 101917789 -140746564 + L1M4 LINE L1 4898 5172 -974 * 2146 93 7 0 chr1 101917789 101918069 -140746284 + AluY SINE Alu 1 282 -29 21 0 0 0 chr1 101918069 101918090 -140746263 + AT_rich Low_complexity Low_complexity 1 21 0 996 276 105 0 chr1 101918190 101918589 -140745764 - L1ME LINE L1 -380 5773 5333 660 124 19 0 chr1 101918593 101918698 -140745655 - L1PBa LINE L1 -5440 1423 1317 2621 162 152 3 chr1 101918702 101919288 -140745065 - L1PBa LINE L1 -5700 1163 491 728 156 0 0 chr1 101919285 101919407 -140744946 - L1 LINE L1 -3408 2738 2617 * 226 267 0 0 chr1 101919443 101919503 -140744850 - L1ME LINE L1 -3217 2912 2853 * 11993 108 153 6 chr1 101919501 101921822 -140742531 - L1PBa LINE L1 -3562 3300 636 811 112 0 0 chr1 101921836 101921961 -140742392 - L1PBa LINE L1 -6736 127 3 354 273 8 8 chr1 101921976 101922108 -140742245 - L1M4 LINE L1 -2299 3847 3716 343 232 97 65 chr1 101922128 101922313 -140742040 - LTR33 LTR ERVL 0 521 331 533 263 51 0 chr1 101922371 101922508 -140741845 - LTR33 LTR ERVL -343 178 35 495 196 123 11 chr1 101922532 101922711 -140741642 - L1M4 LINE L1 -2443 3703 3505 2133 122 6 16 chr1 101922718 101923030 -140741323 - AluSx SINE Alu -3 309 1 590 219 148 30 chr1 101923099 101923268 -140741085 + MER5A DNA MER1_type 1 189 0 474 271 96 4 chr1 101923299 101923528 -140740825 - L1 LINE L1 -3562 2584 2335 434 299 55 19 chr1 101923565 101923926 -140740427 - L1ME LINE L1 -4094 2216 1843 536 288 127 3 chr1 101923991 101924321 -140740032 - L1ME LINE L1 -4584 1726 1356 588 289 128 23 chr1 101924324 101924722 -140739631 - L1ME LINE L1 -4916 1203 764 282 320 70 26 chr1 101925414 101925570 -140738783 - MIR SINE MIR -95 167 5 283 253 27 14 chr1 101926673 101926819 -140737534 + L1MC5 LINE L1 7630 7777 -184 1234 159 65 30 chr1 101926844 101926982 -140737371 + AluJo SINE Alu 2 153 -159 2386 88 0 7 chr1 101926982 101927288 -140737065 + AluY SINE Alu 1 304 -7 1234 159 65 30 chr1 101927288 101927381 -140736972 + AluJo SINE Alu 153 241 -71 781 68 8 8 chr1 101927389 101927506 -140736847 - L1M1 LINE L1 -723 5581 5465 305 266 70 7 chr1 101927677 101927692 -140736661 - HAL1b LINE L1 -6 1342 1328 708 219 90 117 chr1 101927692 101928249 -140736104 - L1ME4a LINE L1 -44 6077 1191 26 50 0 0 chr1 101928581 101928621 -140735732 + AT_rich Low_complexity Low_complexity 1 40 0 196 174 0 65 chr1 101928773 101928819 -140735534 - MIR SINE MIR -142 120 78 21 36 0 0 chr1 101929466 101929494 -140734859 + AT_rich Low_complexity Low_complexity 1 28 0 1089 126 218 61 chr1 101930926 101931187 -140733166 - AluJo SINE Alu 0 302 1 600 164 25 179 chr1 101931524 101931725 -140732628 - MER5B DNA MER1_type -8 170 1 22 0 0 0 chr1 101931741 101931763 -140732590 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1 101931976 101932002 -140732351 + AT_rich Low_complexity Low_complexity 1 26 0 268 114 0 5 chr1 101932003 101932049 -140732304 + Alu SINE Alu 2 38 -264 478 245 15 45 chr1 101932143 101932343 -140732010 + L1MC5 LINE L1 7717 7910 -51 592 230 35 35 chr1 101932794 101932968 -140731385 - MER5B DNA MER1_type 0 178 5 21 57 0 0 chr1 101933163 101933198 -140731155 + AT_rich Low_complexity Low_complexity 1 35 0 1931 168 0 0 chr1 101933283 101933586 -140730767 - AluJb SINE Alu -9 303 1 180 0 0 0 chr1 101933762 101933782 -140730571 + (AAATG)n Simple_repeat Simple_repeat 3 22 0 206 269 45 30 chr1 101933804 101933871 -140730482 + L2 LINE L2 3246 3313 0 2035 137 3 0 chr1 101933935 101934220 -140730133 - AluSg SINE Alu -24 286 1 2950 254 108 46 chr1 101934291 101935612 -140728741 - L2 LINE L2 -35 3278 1865 440 256 158 0 chr1 101935580 101935744 -140728609 - MIR SINE MIR -72 190 1 * 429 251 227 67 chr1 101935893 101936236 -140728117 - L2 LINE L2 0 3313 2916 2045 125 17 0 chr1 101936405 101936693 -140727660 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr1 101936772 101936793 -140727560 + AT_rich Low_complexity Low_complexity 1 21 0 427 266 121 43 chr1 101936804 101937208 -140727145 - L1MC/D LINE L1 -457 5664 5292 22 0 0 0 chr1 101937208 101937230 -140727123 + AT_rich Low_complexity Low_complexity 1 22 0 1032 194 0 0 chr1 101937498 101937673 -140726680 + FAM SINE Alu 1 175 0 324 143 0 0 chr1 101937700 101937756 -140726597 + (GGGA)n Simple_repeat Simple_repeat 4 59 0 1917 174 0 0 chr1 101938431 101938742 -140725611 - AluJo SINE Alu -1 311 1 2018 98 69 0 chr1 101940191 101940467 -140723886 - AluSg SINE Alu -15 295 1 1855 166 3 0 chr1 101941925 101942208 -140722145 + AluJo SINE Alu 2 285 -27 2050 120 28 0 chr1 101942936 101943219 -140721134 + AluSx SINE Alu 1 291 -21 2193 123 17 0 chr1 101943310 101943611 -140720742 + AluSc SINE Alu 1 306 -3 3240 138 34 12 chr1 101945014 101945609 -140718744 - L1MB7 LINE L1 -58 6126 5519 1323 169 52 17 chr1 101947171 101947432 -140716921 - AluJb SINE Alu 0 312 44 31 26 0 0 chr1 101947438 101947476 -140716877 + AT_rich Low_complexity Low_complexity 1 38 0 212 310 0 0 chr1 101947546 101947604 -140716749 + MIR SINE MIR 58 115 -147 494 96 0 0 chr1 101947978 101948051 -140716302 + MER46A DNA MER2_type 24 96 -140 326 324 59 7 chr1 101948154 101948290 -140716063 - MIR SINE MIR -67 195 53 2464 85 3 0 chr1 101948302 101948607 -140715746 + AluSc SINE Alu 1 306 -3 354 279 43 14 chr1 101948656 101948796 -140715557 + MER117 DNA MER1_type 12 155 -42 336 48 0 0 chr1 101949241 101949283 -140715070 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2104 92 7 34 chr1 101949283 101949576 -140714777 - AluSx SINE Alu -27 285 1 262 301 12 24 chr1 101950061 101950144 -140714209 - L3 LINE CR1 -106 1471 1390 22 0 0 0 chr1 101950293 101950315 -140714038 + AT_rich Low_complexity Low_complexity 1 22 0 2169 106 21 0 chr1 101950716 101950998 -140713355 + AluSx SINE Alu 1 288 -24 40 0 0 0 chr1 101950998 101951038 -140713315 + AT_rich Low_complexity Low_complexity 1 40 0 2127 105 0 59 chr1 101951041 101951364 -140712989 + AluSx SINE Alu 1 304 -8 23 54 0 0 chr1 101952653 101952690 -140711663 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 101952814 101952837 -140711516 + AT_rich Low_complexity Low_complexity 1 23 0 11399 29 10 1 chr1 101952837 101954982 -140709371 - L1PA4 LINE L1 -3 6152 3994 31 26 0 0 chr1 101954989 101955027 -140709326 + AT_rich Low_complexity Low_complexity 1 38 0 2284 83 3 3 chr1 101955032 101955322 -140709031 - AluSc SINE Alu -19 290 1 1647 262 48 31 chr1 101955896 101955931 -140708422 - MLT1E LTR MaLR 0 593 560 180 0 0 0 chr1 101955931 101955951 -140708402 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1647 262 48 31 chr1 101955951 101956492 -140707861 - MLT1E LTR MaLR -33 560 7 1824 115 0 52 chr1 101956875 101957162 -140707191 - AluSg SINE Alu 0 310 39 273 322 78 0 chr1 101957961 101958051 -140706302 + MIR SINE MIR 30 126 -82 664 186 77 5 chr1 101958511 101958705 -140705648 + L1MB7 LINE L1 4265 4472 -1674 889 150 7 0 chr1 101958711 101958851 -140705502 + FLAM_C SINE Alu 1 141 -2 34096 97 18 9 chr1 101958854 101964937 -140699416 + L1PA7 LINE L1 13 6152 -2 1110 173 0 0 chr1 101964950 101965123 -140699230 + AluJb SINE Alu 129 301 -11 3812 181 85 35 chr1 101965126 101965805 -140698548 + L1MB7 LINE L1 4477 5120 -1064 1836 174 0 0 chr1 101965805 101966110 -140698243 + AluJb SINE Alu 1 305 -7 3812 181 85 35 chr1 101966110 101966651 -140697702 + L1MB7 LINE L1 5120 5632 -552 782 212 0 0 chr1 101966651 101966783 -140697570 - FLAM_A SINE Alu 0 133 2 3812 181 85 35 chr1 101966783 101967086 -140697267 + L1MB7 LINE L1 5632 5918 -266 216 0 0 0 chr1 101967086 101967110 -140697243 + (TG)n Simple_repeat Simple_repeat 1 24 0 2239 85 4 0 chr1 101967110 101967391 -140696962 - AluSp SINE Alu -31 282 1 3812 181 85 35 chr1 101967391 101967488 -140696865 + L1MB7 LINE L1 5917 6175 -9 1784 162 0 16 chr1 101967558 101967861 -140696492 + AluJo SINE Alu 1 298 -14 1175 168 15 10 chr1 101968129 101968325 -140696028 + L1MD3 LINE L1 6741 6937 -1058 1910 116 35 3 chr1 101968326 101968610 -140695743 + AluJo SINE Alu 1 293 -19 1287 86 29 0 chr1 101968610 101968785 -140695568 + L1MA3 LINE L1 6126 6305 0 334 270 79 53 chr1 101970489 101970641 -140693712 - MIR3 SINE MIR -29 179 24 1506 151 33 70 chr1 101970881 101971180 -140693173 - AluJo SINE Alu -24 288 1 2374 108 29 37 chr1 101971372 101971750 -140692603 - THE1C LTR MaLR 0 375 1 3225 244 42 24 chr1 101971966 101972927 -140691426 - L1M4 LINE L1 -1873 4273 3296 1864 165 7 0 chr1 101973071 101973368 -140690985 - 7SLRNA srpRNA srpRNA -21 299 1 2266 100 30 0 chr1 101973438 101973739 -140690614 + AluSq SINE Alu 1 310 -3 719 267 34 28 chr1 101973745 101974101 -140690252 - L1MEc LINE L1 -4751 1645 1288 1966 157 0 3 chr1 101974102 101974407 -140689946 - AluJo SINE Alu -8 304 1 2063 138 0 0 chr1 101974436 101974732 -140689621 + AluSg SINE Alu 1 296 -14 771 284 31 21 chr1 101974851 101975140 -140689213 - L1MEc LINE L1 -6083 313 22 1900 141 0 0 chr1 101975154 101975417 -140688936 + AluSx SINE Alu 36 298 -14 2033 142 3 7 chr1 101975494 101975796 -140688557 - AluJb SINE Alu -11 301 1 2191 120 7 3 chr1 101975883 101976191 -140688162 + AluSq SINE Alu 3 311 -2 1620 168 0 68 chr1 101976916 101977067 -140687286 + AluJo SINE Alu 3 124 -188 2401 83 10 3 chr1 101977067 101977367 -140686986 + AluSq SINE Alu 1 302 -11 1620 168 0 68 chr1 101977367 101977524 -140686829 + AluJo SINE Alu 124 290 -22 25 0 0 0 chr1 101977650 101977675 -140686678 + AT_rich Low_complexity Low_complexity 1 25 0 2080 121 3 16 chr1 101977692 101977997 -140686356 - AluSx SINE Alu -11 301 1 2270 99 0 0 chr1 101978013 101978339 -140686014 - AluSx SINE Alu 0 326 1 302 306 56 42 chr1 101978558 101978702 -140685651 - L2 LINE L2 -7 3306 3161 2099 125 10 3 chr1 101978767 101979052 -140685301 + AluSx SINE Alu 1 290 -22 225 0 0 0 chr1 101979052 101979077 -140685276 + (CA)n Simple_repeat Simple_repeat 2 26 0 2099 125 10 3 chr1 101979077 101979096 -140685257 + AluSx SINE Alu 290 307 -5 1699 166 136 6 chr1 101979105 101979436 -140684917 + MSTD LTR MaLR 23 396 0 982 327 62 19 chr1 101979474 101980029 -140684324 - L2 LINE L2 -231 3082 2492 243 88 0 0 chr1 101980784 101980818 -140683535 + (TCC)n Simple_repeat Simple_repeat 1 34 0 273 333 27 9 chr1 101981043 101981154 -140683199 + L2 LINE L2 3146 3258 -14 455 231 141 20 chr1 101981300 101981464 -140682889 - MIR SINE MIR -65 143 13 366 336 85 9 chr1 101981764 101981987 -140682366 + MIR SINE MIR 2 241 -21 2048 153 7 0 chr1 101983045 101983353 -140681000 - AluJo SINE Alu -2 310 1 342 310 70 70 chr1 101983449 101983791 -140680562 + L2 LINE L2 228 569 -2745 1028 279 83 30 chr1 101984253 101984626 -140679727 + MLT1J LTR MaLR 96 488 -23 522 289 183 37 chr1 101984808 101985070 -140679283 + L1M4 LINE L1 4282 4504 -1642 1811 156 39 7 chr1 101985070 101985353 -140679000 + AluJb SINE Alu 1 292 -20 522 289 183 37 chr1 101985353 101985369 -140678984 + L1M4 LINE L1 4504 4516 -1630 411 21 0 0 chr1 101985369 101985417 -140678936 + (TG)n Simple_repeat Simple_repeat 1 48 0 522 289 183 37 chr1 101985417 101985618 -140678735 + L1M4 LINE L1 4516 4832 -1314 815 151 7 13 chr1 101985685 101985837 -140678516 - L1MA8 LINE L1 -35 6256 6106 878 116 0 23 chr1 101985844 101985973 -140678380 + FLAM_C SINE Alu 2 127 -16 2341 117 0 0 chr1 101985996 101986304 -140678049 + AluSx SINE Alu 1 308 -4 1708 186 3 7 chr1 101986344 101986635 -140677718 + AluJb SINE Alu 1 290 -22 710 195 0 23 chr1 101986657 101986785 -140677568 + FRAM SINE Alu 37 161 -15 504 0 0 0 chr1 101986828 101986884 -140677469 + (TG)n Simple_repeat Simple_repeat 2 57 0 963 150 0 0 chr1 101987012 101987145 -140677208 - FLAM_C SINE Alu 0 133 1 1531 159 34 41 chr1 101987146 101987441 -140676912 - AluJb SINE Alu -19 293 1 247 202 64 64 chr1 101987657 101987751 -140676602 - MLT1L LTR MaLR -415 200 107 2380 86 0 0 chr1 101987827 101988119 -140676234 + AluSq SINE Alu 3 294 -19 339 270 112 51 chr1 101988207 101988422 -140675931 - L2 LINE L2 -233 3039 2812 263 247 188 100 chr1 101988478 101988648 -140675705 + MIR SINE MIR 2 186 -76 2239 103 20 0 chr1 101989433 101989733 -140674620 + AluSx SINE Alu 1 306 -6 419 250 50 0 chr1 101989758 101989858 -140674495 + MIR SINE MIR 49 153 -109 2089 126 0 7 chr1 101989901 101990187 -140674166 + AluSx SINE Alu 9 292 -20 207 0 0 0 chr1 101990191 101990214 -140674139 + (TG)n Simple_repeat Simple_repeat 2 24 0 439 314 167 25 chr1 101990474 101990834 -140673519 - L2 LINE L2 -2 3270 2860 2131 126 3 0 chr1 101991035 101991336 -140673017 + AluSx SINE Alu 1 302 -10 286 258 11 22 chr1 101991353 101991442 -140672911 - L2 LINE L2 -612 2702 2615 982 93 0 8 chr1 101991467 101991596 -140672757 - AluSg SINE Alu -182 128 1 968 151 76 0 chr1 101991841 101991856 -140672497 + AluSg/x SINE Alu 121 133 -179 2241 102 7 0 chr1 101991856 101992151 -140672202 + AluSg SINE Alu 2 298 -12 968 151 76 0 chr1 101992151 101992307 -140672046 + AluSg/x SINE Alu 133 305 -7 555 291 85 26 chr1 101992315 101992453 -140671900 - L2 LINE L2 -1065 2249 2121 2217 112 16 0 chr1 101992453 101992758 -140671595 + AluSx SINE Alu 1 310 -2 555 291 85 26 chr1 101992758 101992925 -140671428 - L2 LINE L2 -1193 2121 1926 362 347 13 13 chr1 101993182 101993332 -140671021 + MIR3 SINE MIR 56 205 -3 2101 92 25 3 chr1 101993391 101993674 -140670679 + AluSc SINE Alu 1 289 -20 1808 166 0 14 chr1 101993687 101993982 -140670371 + AluJo SINE Alu 1 291 -21 26 0 0 0 chr1 101993982 101994008 -140670345 + AT_rich Low_complexity Low_complexity 1 26 0 2366 86 6 10 chr1 101994067 101994381 -140669972 - AluSp SINE Alu 0 313 1 695 138 69 69 chr1 101994452 101994597 -140669756 + 7SLRNA srpRNA srpRNA 161 305 -15 329 289 50 58 chr1 101994773 101994894 -140669459 - L2 LINE L2 -15 3257 3138 197 308 174 33 chr1 101995392 101995691 -140668662 - L2 LINE L2 -1201 2113 1773 613 230 75 24 chr1 101995732 101995945 -140668408 + L1ME4a LINE L1 5621 5844 -277 17663 79 55 1 chr1 101996623 101998951 -140665402 - L1P LINE L1 -1341 4805 2352 2377 85 3 0 chr1 101998952 101999247 -140665106 - AluSg SINE Alu -14 296 1 375 230 14 0 chr1 101999357 101999431 -140664922 + MIR SINE MIR 38 112 -96 203 295 98 0 chr1 101999494 101999555 -140664798 + MIR3 SINE MIR 118 184 -24 207 334 39 36 chr1 101999662 101999897 -140664456 - L2 LINE L2 -208 3064 2004 746 144 54 0 chr1 102000294 102000405 -140663948 + FLAM_C SINE Alu 1 117 -16 33 25 0 0 chr1 102000406 102000446 -140663907 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr1 102000944 102000974 -140663379 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 102001186 102001209 -140663144 + AT_rich Low_complexity Low_complexity 1 23 0 2071 161 15 35 chr1 102001303 102001701 -140662652 - L1MB8 LINE L1 -5 6173 5784 13230 102 110 44 chr1 102001703 102003928 -140660425 + Tigger1 DNA MER2_type 1 2372 -46 2474 173 56 17 chr1 102003928 102004449 -140659904 - L1MB8 LINE L1 -412 5766 5221 2355 100 0 0 chr1 102004561 102004872 -140659481 - AluSx SINE Alu -1 311 1 4489 180 43 9 chr1 102004924 102005976 -140658377 + L1MB8 LINE L1 5090 6333 -1 2404 75 0 3 chr1 102006097 102006403 -140657950 - AluY SINE Alu -6 305 1 371 252 10 10 chr1 102006473 102006576 -140657777 + MIR SINE MIR 160 262 0 334 337 112 27 chr1 102006607 102007140 -140657213 + L2 LINE L2 2687 3270 -2 22 0 0 0 chr1 102009540 102009562 -140654791 + AT_rich Low_complexity Low_complexity 1 22 0 29678 89 13 6 chr1 102009742 102014788 -140649565 - L1PA7 LINE L1 0 6469 1402 26 82 0 0 chr1 102015151 102015212 -140649141 + AT_rich Low_complexity Low_complexity 1 61 0 877 172 7 7 chr1 102015272 102015417 -140648936 + FRAM SINE Alu 1 145 -31 1787 135 14 28 chr1 102015516 102015798 -140648555 + AluSx SINE Alu 25 302 -10 2119 87 7 30 chr1 102016756 102017081 -140647272 + AluSx SINE Alu 1 312 0 338 233 244 40 chr1 102017108 102017284 -140647069 + MIR SINE MIR 50 261 -1 2302 104 0 3 chr1 102017325 102017632 -140646721 + AluSx SINE Alu 1 306 -6 242 285 23 8 chr1 102017649 102017779 -140646574 + L1ME LINE L1 90 221 -5984 577 281 111 55 chr1 102017958 102018464 -140645889 + L1ME LINE L1 438 971 -5234 907 80 0 0 chr1 102018488 102018600 -140645753 + AluSq/x SINE Alu 1 112 -201 2109 109 0 0 chr1 102018974 102019258 -140645095 + AluSx SINE Alu 29 312 0 300 181 0 28 chr1 102019260 102019332 -140645021 + L1ME LINE L1 2198 2267 -4129 829 99 59 46 chr1 102019347 102019499 -140644854 + MER3 DNA MER1_type 50 203 -6 766 239 32 4 chr1 102019509 102019671 -140644682 + L1ME LINE L1 2232 2405 -3810 2364 107 0 3 chr1 102019671 102019980 -140644373 + AluSg SINE Alu 1 308 -2 766 239 32 4 chr1 102019980 102020068 -140644285 + L1ME LINE L1 2405 2489 -3726 668 172 23 0 chr1 102020091 102020219 -140644134 - FLAM_C SINE Alu -4 139 9 1318 168 65 62 chr1 102020240 102020579 -140643774 - L1MA10 LINE L1 -1 6333 5994 1006 232 39 53 chr1 102020580 102020727 -140643626 + L1ME LINE L1 3616 3764 -2451 549 30 0 0 chr1 102020727 102020794 -140643559 + (TC)n Simple_repeat Simple_repeat 2 68 0 1558 152 0 31 chr1 102020796 102021053 -140643300 - AluJo SINE Alu -25 287 39 1006 232 39 53 chr1 102021053 102021193 -140643160 + L1ME LINE L1 3765 3903 -2312 2250 98 3 3 chr1 102021193 102021488 -140642865 + AluSp SINE Alu 1 295 -18 1006 232 39 53 chr1 102021488 102021554 -140642799 + L1ME LINE L1 3903 3968 -2247 2174 99 3 0 chr1 102021574 102021880 -140642473 + AluSp SINE Alu 1 307 0 2275 198 42 87 chr1 102021884 102022352 -140642001 + L1ME LINE L1 4601 5089 -1146 2064 111 24 17 chr1 102022352 102022650 -140641703 + AluSg SINE Alu 5 304 -6 2275 198 42 87 chr1 102022650 102022830 -140641523 + L1ME LINE L1 5089 5276 -959 2307 94 0 0 chr1 102022830 102023117 -140641236 + AluSc SINE Alu 2 288 -21 2275 198 42 87 chr1 102023117 102023180 -140641173 + L1ME LINE L1 5276 5340 -895 2298 109 3 0 chr1 102023180 102023482 -140640871 + AluSq SINE Alu 9 311 -2 2275 198 42 87 chr1 102023482 102023784 -140640569 + L1ME LINE L1 5340 5654 -581 2371 72 7 3 chr1 102023784 102024090 -140640263 + AluSx SINE Alu 1 307 -5 2275 198 42 87 chr1 102024090 102024211 -140640142 + L1ME LINE L1 5654 5657 -578 2237 113 0 0 chr1 102024211 102024520 -140639833 + AluSx SINE Alu 1 309 -3 2275 198 42 87 chr1 102024520 102024616 -140639737 + L1ME LINE L1 5657 5756 -479 2187 119 0 6 chr1 102024621 102024932 -140639421 + AluSg SINE Alu 1 309 -1 6115 124 14 19 chr1 102024948 102026047 -140638306 + L1MA4A LINE L1 5156 6248 -55 2266 117 0 0 chr1 102026047 102026346 -140638007 + AluSg SINE Alu 2 300 -10 6115 124 14 19 chr1 102026346 102026398 -140637955 + L1MA4A LINE L1 6248 6299 -4 287 140 220 20 chr1 102026413 102026513 -140637840 + L1ME LINE L1 5748 5867 -366 293 259 0 19 chr1 102026622 102026730 -140637623 - L1ME LINE L1 -301 5820 5715 609 303 61 22 chr1 102026951 102027179 -140637174 - L2 LINE L2 -2026 1288 1052 28989 69 5 2 chr1 102027182 102032062 -140632291 - L1PA6 LINE L1 -2 6152 1267 2257 98 10 0 chr1 102032581 102032877 -140631476 - AluSx SINE Alu -13 299 1 307 253 0 0 chr1 102033188 102033263 -140631090 - L1MC4a LINE L1 -1900 5908 5834 2144 91 52 3 chr1 102033585 102033871 -140630482 + AluSq SINE Alu 1 300 -13 734 195 60 0 chr1 102034189 102034338 -140630015 + Tigger3(Golem) DNA MER2_type 1 158 -2871 584 131 0 0 chr1 102034972 102035056 -140629297 - AluJ/FLAM SINE Alu -228 84 1 29 28 0 0 chr1 102036234 102036270 -140628083 + AT_rich Low_complexity Low_complexity 1 36 0 392 185 148 0 chr1 102037110 102037191 -140627162 - L2 LINE L2 -4 3309 3217 1877 167 6 3 chr1 102037197 102037526 -140626827 - MER7A DNA MER2_type -1 345 18 438 362 54 29 chr1 102037559 102037901 -140626452 - L2 LINE L2 -164 3149 2791 23 86 0 0 chr1 102038017 102038075 -140626278 + AT_rich Low_complexity Low_complexity 1 58 0 208 268 0 52 chr1 102038182 102038279 -140626074 + (CATA)n Simple_repeat Simple_repeat 3 94 0 283 253 48 0 chr1 102038336 102038419 -140625934 - L1MC4a LINE L1 -1982 5826 5740 2463 90 0 6 chr1 102038451 102038762 -140625591 + AluSx SINE Alu 1 309 -3 203 191 0 24 chr1 102038941 102038983 -140625370 + CT-rich Low_complexity Low_complexity 1 41 0 2125 134 3 0 chr1 102040166 102040458 -140623895 + AluSx SINE Alu 1 293 -19 234 62 0 0 chr1 102040589 102040621 -140623732 + (T)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr1 102040621 102040641 -140623712 + (G)n Simple_repeat Simple_repeat 1 20 0 324 209 35 12 chr1 102040754 102040840 -140623513 - FRAM/FAM SINE Alu -80 86 1 2023 109 13 48 chr1 102041140 102041451 -140622902 - AluSx SINE Alu -2 310 11 1961 141 24 0 chr1 102041589 102041760 -140622593 - AluSx SINE Alu -14 298 116 189 0 0 0 chr1 102041760 102041781 -140622572 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1961 141 24 0 chr1 102041781 102041900 -140622453 - AluSx SINE Alu -196 116 1 761 284 194 74 chr1 102041978 102042585 -140621768 + L2 LINE L2 1979 2512 -760 828 154 0 8 chr1 102042585 102042715 -140621638 + FLAM_A SINE Alu 3 131 -2 761 284 194 74 chr1 102042715 102042831 -140621522 + L2 LINE L2 2512 2613 -659 1846 169 24 6 chr1 102042831 102043169 -140621184 + MER2 DNA MER2_type 1 344 0 761 284 194 74 chr1 102043169 102043354 -140620999 + L2 LINE L2 2613 2774 -498 2461 81 0 7 chr1 102043354 102043661 -140620692 + AluSg SINE Alu 1 305 -5 761 284 194 74 chr1 102043661 102043714 -140620639 + L2 LINE L2 2774 3049 -223 196 250 15 59 chr1 102043721 102043789 -140620564 - L2 LINE L2 -2 3270 3206 751 208 16 11 chr1 102043789 102043972 -140620381 + L1ME3A LINE L1 5385 5568 -594 1355 215 69 28 chr1 102043974 102044397 -140619956 + L1ME3A LINE L1 5706 6145 -25 1842 146 0 48 chr1 102044411 102044727 -140619626 - AluJb SINE Alu -11 301 1 250 139 0 0 chr1 102045333 102045369 -140618984 - L1MC3 LINE L1 -1047 6738 6703 26 0 0 0 chr1 102045947 102045973 -140618380 + AT_rich Low_complexity Low_complexity 1 26 0 647 259 188 31 chr1 102046645 102047187 -140617166 + L2 LINE L2 2694 3298 -15 4746 106 1 0 chr1 102047575 102048274 -140616079 + L1P LINE L1 1 700 -5446 21 0 0 31 chr1 102048538 102048557 -140615796 + AT_rich Low_complexity Low_complexity 1 20 -11 2307 75 3 7 chr1 102048557 102048849 -140615504 + AluY SINE Alu 1 291 -20 21 0 0 31 chr1 102048849 102048861 -140615492 + AT_rich Low_complexity Low_complexity 20 31 0 2114 94 10 17 chr1 102050233 102050530 -140613823 - AluSp SINE Alu -18 295 1 529 196 114 44 chr1 102050851 102051009 -140613344 + MIR SINE MIR 72 240 -22 597 194 82 51 chr1 102051009 102051076 -140613277 - MER105 DNA DNA -1 203 140 2402 138 48 21 chr1 102051076 102051496 -140612857 - Tigger2a DNA MER2_type -3 431 1 597 194 82 51 chr1 102051496 102051624 -140612729 - MER105 DNA DNA -64 140 2 1638 194 13 10 chr1 102051701 102052011 -140612342 - AluJb SINE Alu -1 311 1 3470 109 118 5 chr1 102052361 102052991 -140611362 - Tigger3(Golem) DNA MER2_type -1 3028 2328 695 87 9 43 chr1 102052992 102053107 -140611246 + AluSq/x SINE Alu 1 111 -201 2308 79 10 7 chr1 102053615 102053905 -140610448 - AluSq SINE Alu -20 293 3 1762 182 0 37 chr1 102054110 102054434 -140609919 - AluJo SINE Alu 0 312 1 365 278 154 94 chr1 102054562 102055099 -140609254 + L1MEd LINE L1 621 1344 -1146 2204 27 0 0 chr1 102055099 102055357 -140608996 + L1PA2 LINE L1 5897 6154 -1 365 278 154 94 chr1 102055357 102055659 -140608694 + L1MEd LINE L1 1344 1627 -863 2291 82 10 13 chr1 102055664 102055967 -140608386 + AluY SINE Alu 1 302 -9 861 172 18 35 chr1 102056029 102056198 -140608155 + FAM SINE Alu 1 49 0 225 230 0 68 chr1 102056484 102056558 -140607795 + GA-rich Low_complexity Low_complexity 4 72 0 2406 90 3 3 chr1 102056674 102056985 -140607368 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr1 102058164 102058193 -140606160 + AT_rich Low_complexity Low_complexity 1 29 0 316 274 94 75 chr1 102059305 102059517 -140604836 + L1MC4 LINE L1 7826 8041 -1 432 226 9 9 chr1 102060073 102060179 -140604174 + MLT1K LTR MaLR 481 586 -2 259 327 43 43 chr1 102060248 102060410 -140603943 + MER5B DNA MER1_type 1 162 -16 597 291 66 47 chr1 102062238 102062660 -140601693 - L1MC4 LINE L1 -17 8025 7596 720 206 52 0 chr1 102062665 102062820 -140601533 - AluSg/x SINE Alu -2 310 148 389 169 0 0 chr1 102063459 102063530 -140600823 + L1MC4 LINE L1 6935 7005 -1037 1646 169 14 18 chr1 102064446 102064618 -140599735 - AluJb SINE Alu 0 305 133 2419 86 0 0 chr1 102064618 102064921 -140599432 - AluSg SINE Alu -7 303 1 1646 169 14 18 chr1 102064921 102065054 -140599299 - AluJb SINE Alu -172 133 1 543 313 66 11 chr1 102065648 102065830 -140598523 + MIR3 SINE MIR 10 201 -7 1712 168 3 37 chr1 102066008 102066329 -140598024 + AluJb SINE Alu 2 311 -1 22 0 0 0 chr1 102066881 102066903 -140597450 + AT_rich Low_complexity Low_complexity 1 22 0 11892 78 30 5 chr1 102067054 102068749 -140595604 + HERVL-A1 LTR ERVL 2 1737 -3917 * 18281 64 12 8 chr1 102068743 102071171 -140593182 + HERVL-A1 LTR ERVL 3209 5645 -9 1266 249 77 48 chr1 102071172 102071188 -140593165 + L1MCb LINE L1 1029 1043 -5702 2493 93 111 20 chr1 102071188 102071554 -140592799 + MLT2A1 LTR ERVL 1 409 -35 180 0 0 0 chr1 102071554 102071574 -140592779 + (TA)n Simple_repeat Simple_repeat 2 21 0 2493 93 111 20 chr1 102071574 102071614 -140592739 + MLT2A1 LTR ERVL 409 444 0 1266 249 77 48 chr1 102071614 102071747 -140592606 + L1MCb LINE L1 1043 1171 -5574 750 141 31 31 chr1 102071747 102071875 -140592478 + FLAM_C SINE Alu 2 129 -4 1266 249 77 48 chr1 102071875 102072170 -140592183 + L1MCb LINE L1 1171 1456 -5289 2292 104 3 7 chr1 102072170 102072478 -140591875 + AluSp SINE Alu 1 307 -6 1266 249 77 48 chr1 102072478 102073351 -140591002 + L1MCb LINE L1 1456 2586 -4159 316 118 0 0 chr1 102073416 102073467 -140590886 - Alu SINE Alu -4 297 247 1006 121 0 13 chr1 102073567 102073724 -140590629 + AluSc SINE Alu 142 296 -13 561 166 85 116 chr1 102073741 102073940 -140590413 - HAL1 LINE L1 -2314 193 1 242 296 56 24 chr1 102073937 102074062 -140590291 - HAL1 LINE L1 -2332 175 47 * 183 340 0 0 chr1 102074135 102074188 -140590165 - MIR3 SINE MIR -7 201 149 26 0 0 0 chr1 102074358 102074384 -140589969 + AT_rich Low_complexity Low_complexity 1 26 0 2268 94 0 10 chr1 102074393 102074692 -140589661 + AluSq SINE Alu 1 296 -17 3035 146 112 30 chr1 102074710 102075076 -140589277 + L1MB2 LINE L1 5417 5752 -419 2331 86 3 0 chr1 102075076 102075367 -140588986 + AluSx SINE Alu 1 292 -20 3035 146 112 30 chr1 102075367 102075694 -140588659 + L1MB2 LINE L1 5752 6167 -4 2046 211 154 37 chr1 102075715 102076587 -140587766 - L1MEd LINE L1 -2848 3281 2308 414 0 0 0 chr1 102076606 102076652 -140587701 + (CA)n Simple_repeat Simple_repeat 1 46 0 410 267 103 14 chr1 102076695 102076841 -140587512 - L1MEd LINE L1 -5960 159 1 1828 137 20 30 chr1 102076945 102077244 -140587109 - AluJb SINE Alu -16 296 1 1665 171 29 0 chr1 102077547 102077827 -140586526 + AluJo SINE Alu 11 298 -14 1016 205 96 46 chr1 102077957 102078308 -140586045 + MER57A LTR ERV1 50 399 -4 1692 151 16 26 chr1 102078449 102078753 -140585600 + AluJb SINE Alu 1 301 -11 1107 154 12 0 chr1 102078753 102078915 -140585438 + AluJb SINE Alu 134 297 -15 1127 183 114 24 chr1 102079062 102079352 -140585001 - MER2 DNA MER2_type -16 329 14 421 81 0 16 chr1 102079374 102079436 -140584917 - MLT1C LTR MaLR -4 463 403 1227 199 0 0 chr1 102079437 102079653 -140584700 + AluSx SINE Alu 1 216 -96 201 128 51 0 chr1 102080283 102080322 -140584031 + (TA)n Simple_repeat Simple_repeat 2 42 0 2878 56 36 5 chr1 102080326 102080718 -140583635 - MLT2A1 LTR ERVL -40 404 1 1229 225 22 38 chr1 102080718 102081087 -140583266 - L1MCc LINE L1 -4997 1426 1064 1831 158 10 17 chr1 102081221 102081519 -140582834 + AluJo SINE Alu 4 299 -13 2083 102 33 0 chr1 102081520 102081831 -140582522 + AluSq SINE Alu 1 320 0 2407 99 0 3 chr1 102082370 102082683 -140581670 - AluSx SINE Alu 0 312 1 225 230 0 68 chr1 102082799 102082873 -140581480 + CT-rich Low_complexity Low_complexity 4 72 0 861 172 18 35 chr1 102083159 102083328 -140581025 - FAM SINE Alu 0 49 1 2291 82 10 13 chr1 102083390 102083693 -140580660 - AluY SINE Alu -9 302 1 365 252 174 121 chr1 102083698 102084000 -140580353 - L1MEd LINE L1 -863 1627 1342 2204 27 0 0 chr1 102084000 102084258 -140580095 - L1PA2 LINE L1 -1 6154 5897 365 252 174 121 chr1 102084258 102084795 -140579558 - L1MEd LINE L1 -1148 1342 621 1762 185 0 37 chr1 102084923 102085247 -140579106 + AluJb SINE Alu 1 312 0 855 120 0 16 chr1 102085452 102085577 -140578776 + AluSq/x SINE Alu 3 125 -187 837 239 19 39 chr1 102085680 102085939 -140578414 - MER46C DNA MER2_type -65 273 20 22 88 0 0 chr1 102086043 102086100 -140578253 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr1 102086706 102086728 -140577625 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chr1 102087111 102087146 -140577207 + (CA)n Simple_repeat Simple_repeat 1 35 0 1908 74 0 23 chr1 102088127 102088383 -140575970 + AluY SINE Alu 44 293 -18 207 0 0 0 chr1 102088387 102088410 -140575943 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1964 156 16 0 chr1 102088645 102088952 -140575401 + AluSx SINE Alu 1 312 0 355 284 77 26 chr1 102089064 102089219 -140575134 + MIR SINE MIR 53 215 -47 2236 83 14 3 chr1 102089588 102089878 -140574475 - AluSq SINE Alu -20 293 1 397 243 17 52 chr1 102089924 102090101 -140574252 + L1ME4a LINE L1 5622 5810 -352 1580 196 86 52 chr1 102090121 102090485 -140573868 - MLT1D LTR MaLR 0 505 120 2178 91 10 20 chr1 102090485 102090783 -140573570 - AluY SINE Alu -16 295 1 1580 196 86 52 chr1 102090783 102090882 -140573471 - MLT1D LTR MaLR -385 120 26 239 205 18 108 chr1 102091029 102091195 -140573158 + L1ME4a LINE L1 5926 6076 -45 398 278 98 63 chr1 102091211 102091489 -140572864 - L2 LINE L2 -1318 1996 1700 1881 168 0 13 chr1 102091489 102091798 -140572555 - AluJb SINE Alu -7 305 1 398 278 98 63 chr1 102091798 102091886 -140572467 - L2 LINE L2 -1614 1700 1617 2134 139 0 0 chr1 102092288 102092589 -140571764 - AluSx SINE Alu -11 301 1 215 305 17 0 chr1 102092668 102092727 -140571626 - MIR SINE MIR -133 129 70 21 57 0 0 chr1 102092762 102092797 -140571556 + AT_rich Low_complexity Low_complexity 1 35 0 2142 188 118 18 chr1 102092900 102093284 -140571069 - MER44D DNA MER2_type -1883 604 102 2222 112 0 3 chr1 102093284 102093587 -140570766 - AluSx SINE Alu -10 302 1 2142 188 118 18 chr1 102093587 102093701 -140570652 - MER44D DNA MER2_type -2385 102 1 383 0 0 21 chr1 102094242 102094290 -140570063 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1450 183 0 73 chr1 102094293 102094593 -140569760 - AluJo SINE Alu -34 278 1 962 104 0 15 chr1 102095034 102095168 -140569185 + FLAM_C SINE Alu 2 133 0 771 225 25 0 chr1 102096576 102096736 -140567617 - FRAM SINE Alu -2 164 1 23 0 0 0 chr1 102096744 102096767 -140567586 + AT_rich Low_complexity Low_complexity 1 23 0 1010 178 0 0 chr1 102096768 102096925 -140567428 - AluJo/FRAM SINE Alu -25 287 131 281 156 0 0 chr1 102096925 102096970 -140567383 - Alu SINE Alu -254 48 4 29 28 0 0 chr1 102097031 102097067 -140567286 + AT_rich Low_complexity Low_complexity 1 36 0 1686 166 14 20 chr1 102097109 102097404 -140566949 - AluJb SINE Alu -19 293 1 1044 125 24 6 chr1 102097407 102097575 -140566778 - L1PB4 LINE L1 0 6156 5986 963 168 43 57 chr1 102098039 102098248 -140566105 - AluSx SINE Alu -106 206 1 393 192 20 30 chr1 102098255 102098354 -140565999 - L1MB7 LINE L1 -11 6173 6076 2326 85 3 7 chr1 102098475 102098782 -140565571 + AluSg SINE Alu 1 306 -4 707 181 33 55 chr1 102098845 102099027 -140565326 + Charlie4 DNA MER1_type 1784 1961 0 347 290 188 23 chr1 102099033 102099209 -140565144 + L1ME3A LINE L1 5655 5859 -311 21 0 0 0 chr1 102099280 102099301 -140565052 + AT_rich Low_complexity Low_complexity 1 21 0 223 282 0 64 chr1 102100252 102100298 -140564055 - MER91C DNA MER1_type -32 108 67 1161 178 9 18 chr1 102100298 102100517 -140563836 + MER20 DNA MER1_type 3 219 0 223 282 0 64 chr1 102100517 102100548 -140563805 - MER91C DNA MER1_type -73 67 36 319 235 70 43 chr1 102101014 102101129 -140563224 - MIR SINE MIR 0 262 145 942 75 0 17 chr1 102101193 102101313 -140563040 + AluSq/x SINE Alu 1 118 -195 285 29 0 0 chr1 102101324 102101358 -140562995 + (A)n Simple_repeat Simple_repeat 1 34 0 218 216 0 0 chr1 102101433 102101470 -140562883 + MER91C DNA MER1_type 39 75 -115 412 78 13 52 chr1 102101471 102101548 -140562805 + MER20 DNA MER1_type 4 77 -142 186 266 101 25 chr1 102101551 102101630 -140562723 - MIR SINE MIR -133 129 45 339 202 0 53 chr1 102101793 102101887 -140562466 - MER5C DNA MER1_type 0 324 236 2747 181 61 14 chr1 102102672 102103292 -140561061 - L1MB7 LINE L1 -11 6173 5525 5866 96 21 4 chr1 102103661 102104427 -140559926 - L1PB1 LINE L1 -8 6143 5386 2315 84 3 7 chr1 102104427 102104725 -140559628 - AluSg1 SINE Alu -12 297 1 5866 96 21 4 chr1 102104725 102105206 -140559147 - L1PB1 LINE L1 -765 5386 4914 310 335 72 24 chr1 102106103 102106270 -140558083 - L3 LINE CR1 -13 1564 1390 40295 50 7 4 chr1 102106304 102112435 -140551918 - L1PA4 LINE L1 -1 6154 3 180 244 11 78 chr1 102112467 102112557 -140551796 - L3 LINE CR1 -281 1296 1213 1129 171 114 0 chr1 102113316 102113597 -140550756 + MER33 DNA MER1_type 12 324 0 2061 106 0 4 chr1 102113761 102114035 -140550318 + AluSx SINE Alu 29 301 -11 379 211 325 26 chr1 102115263 102115457 -140548896 - MIR SINE MIR -6 256 5 32 67 0 0 chr1 102115471 102115531 -140548822 + AT_rich Low_complexity Low_complexity 1 60 0 5643 100 37 2 chr1 102116313 102117845 -140546508 + L1PA8A LINE L1 4549 6131 0 2067 104 29 0 chr1 102118501 102118780 -140545573 + AluY SINE Alu 7 293 -18 1353 174 99 18 chr1 102119929 102120211 -140544142 - AluJo SINE Alu -7 305 1 719 238 44 34 chr1 102120579 102120899 -140543454 + L1MC4 LINE L1 7128 7450 -592 2383 215 104 68 chr1 102121018 102122007 -140542346 - L1M4 LINE L1 -2850 3296 2272 2182 148 39 26 chr1 102123312 102123839 -140540514 - L1M3 LINE L1 -499 5681 5146 185 0 40 0 chr1 102123852 102123877 -140540476 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1291 218 13 50 chr1 102123992 102124290 -140540063 + AluJo SINE Alu 5 291 -21 2400 138 50 27 chr1 102124962 102125498 -140538855 - L1MA8 LINE L1 -277 6021 5443 1887 146 46 6 chr1 102125842 102126165 -140538188 + MER1B DNA MER1_type 1 336 -1 220 211 0 0 chr1 102127127 102127179 -140537174 + (TA)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr1 102127436 102127458 -140536895 + AT_rich Low_complexity Low_complexity 1 22 0 257 152 0 45 chr1 102127589 102127655 -140536698 + (TA)n Simple_repeat Simple_repeat 1 63 0 276 288 6 75 chr1 102128232 102128290 -140536063 + L2 LINE L2 3102 3162 -151 1120 86 62 0 chr1 102128290 102128452 -140535901 - L1PA14 LINE L1 0 6161 5990 276 288 6 75 chr1 102128452 102128553 -140535800 + L2 LINE L2 3162 3250 -63 382 155 0 0 chr1 102128583 102128641 -140535712 + AluS SINE Alu 229 286 -14 1844 163 0 0 chr1 102128641 102128918 -140535435 - AluJo SINE Alu -35 277 1 217 274 0 39 chr1 102128933 102128984 -140535369 + L2 LINE L2 3211 3259 -13 332 290 84 0 chr1 102129593 102129724 -140534629 + MIR SINE MIR 70 211 -51 608 119 0 0 chr1 102129935 102130019 -140534334 + AluS SINE Alu 1 84 -228 574 222 6 90 chr1 102130189 102130303 -140534050 - MIR SINE MIR 0 262 165 1687 171 6 29 chr1 102130303 102130619 -140533734 - AluJb SINE Alu -2 310 2 574 222 6 90 chr1 102130619 102130671 -140533682 - MIR SINE MIR -97 165 110 41867 53 8 3 chr1 102131116 102134430 -140529923 - L1PA4 LINE L1 0 6155 2799 2420 82 0 0 chr1 102134430 102134733 -140529620 - AluY SINE Alu -8 303 1 41867 53 8 3 chr1 102134733 102137543 -140526810 - L1PA4 LINE L1 -3356 2799 3 183 244 11 78 chr1 102137575 102137665 -140526688 - L3 LINE CR1 -281 1296 1213 1208 171 114 0 chr1 102138424 102138705 -140525648 + MER33 DNA MER1_type 12 324 0 2048 106 0 4 chr1 102138869 102139143 -140525210 + AluSx SINE Alu 29 301 -11 379 211 325 26 chr1 102140371 102140565 -140523788 - MIR SINE MIR -6 256 5 32 67 0 0 chr1 102140579 102140639 -140523714 + AT_rich Low_complexity Low_complexity 1 60 0 5566 98 51 2 chr1 102141421 102142953 -140521400 + L1PA8A LINE L1 4549 6131 0 2039 111 29 0 chr1 102143609 102143888 -140520465 + AluY SINE Alu 7 293 -18 1353 174 99 18 chr1 102145037 102145319 -140519034 - AluJo SINE Alu -7 305 1 683 244 44 34 chr1 102145687 102146007 -140518346 + L1MC4 LINE L1 7128 7450 -592 186 71 0 0 chr1 102146212 102146240 -140518113 + (A)n Simple_repeat Simple_repeat 1 28 0 1198 115 11 0 chr1 102146240 102146431 -140517922 + AluY SINE Alu 119 311 0 4112 186 36 40 chr1 102146440 102147562 -140516791 - L1MB5 LINE L1 -46 6128 5022 1690 179 21 3 chr1 102147562 102147852 -140516501 + AluJb SINE Alu 1 295 -17 4112 186 36 40 chr1 102147852 102148533 -140515820 - L1MB5 LINE L1 -1152 5022 4340 426 259 142 19 chr1 102148535 102148851 -140515502 - L1MEc LINE L1 -4002 2394 2040 747 302 106 32 chr1 102148852 102149229 -140515124 + L2 LINE L2 2895 3299 -14 1136 155 43 14 chr1 102149478 102149497 -140514856 + L1MB4 LINE L1 5595 5612 -688 3619 176 28 19 chr1 102149497 102149598 -140514755 + L1MB4 LINE L1 5430 5529 -651 2774 16 0 0 chr1 102149598 102149903 -140514450 + AluYa5 SINE Alu 1 305 -6 3619 176 28 19 chr1 102149903 102150545 -140513808 + L1MB4 LINE L1 5529 6180 0 1136 155 43 14 chr1 102150545 102150732 -140513621 + L1MB4 LINE L1 5612 5807 -493 1052 358 37 17 chr1 102150736 102151324 -140513029 + L1PB4 LINE L1 1 890 -6319 356 324 36 36 chr1 102151552 102151774 -140512579 + L1PB4 LINE L1 1154 1375 -5834 7894 210 56 103 chr1 102151882 102153857 -140510496 + L1PB4 LINE L1 1359 3425 -3793 253 157 0 39 chr1 102153857 102153908 -140510445 + MER4D LTR ERV1 781 829 -74 7894 210 56 103 chr1 102153908 102155410 -140508943 + L1PB4 LINE L1 3425 4996 -2222 1983 165 7 0 chr1 102155410 102155719 -140508634 + AluJb SINE Alu 2 312 0 7894 210 56 103 chr1 102155719 102155730 -140508623 + L1PB4 LINE L1 4996 5006 -2212 1904 156 134 0 chr1 102155730 102156095 -140508258 - MSTA LTR MaLR -14 414 1 7894 210 56 103 chr1 102156095 102158260 -140506093 + L1PB4 LINE L1 5006 7213 -5 2609 113 24 12 chr1 102158258 102158672 -140505681 + L1MA6 LINE L1 5798 6216 -84 * 960 211 142 0 chr1 102158721 102158981 -140505372 + L1ME1 LINE L1 5865 6161 -5 1587 200 0 38 chr1 102161754 102162074 -140502279 - AluJo SINE Alu -2 310 3 2284 104 0 3 chr1 102162953 102163260 -140501093 + AluSc SINE Alu 1 306 -3 733 166 0 86 chr1 102164184 102164359 -140499994 + AluJo SINE Alu 1 160 -152 477 162 0 229 chr1 102164335 102164619 -140499734 + AluJb SINE Alu 71 289 -23 * 210 71 0 0 chr1 102164619 102164647 -140499706 + (GGGGA)n Simple_repeat Simple_repeat 2 29 0 235 158 18 18 chr1 102165568 102165625 -140498728 + GA-rich Low_complexity Low_complexity 1 57 0 1699 158 27 10 chr1 102165941 102166233 -140498120 + AluJb SINE Alu 1 297 -15 2056 110 0 0 chr1 102166573 102166846 -140497507 - AluY SINE Alu -38 273 1 249 376 124 11 chr1 102167852 102168030 -140496323 + MIR SINE MIR 3 200 -62 2094 142 0 0 chr1 102168197 102168493 -140495860 + AluSx SINE Alu 1 296 -16 393 249 42 37 chr1 102169012 102169201 -140495152 + L1ME LINE L1 5570 5759 -362 4473 263 157 24 chr1 102169201 102170736 -140493617 + L2 LINE L2 840 2753 -560 1737 159 10 17 chr1 102170736 102171026 -140493327 - AluJo SINE Alu -14 298 11 4473 263 157 24 chr1 102171026 102171668 -140492685 + L2 LINE L2 2753 3308 -5 349 330 123 18 chr1 102171820 102172047 -140492306 + MIR SINE MIR 1 251 -11 963 73 0 37 chr1 102172427 102172563 -140491790 - FLAM_C SINE Alu -2 131 1 3432 45 5 2 chr1 102173203 102173628 -140490725 + L1PA7 LINE L1 5729 6154 0 1961 141 0 7 chr1 102173992 102174289 -140490064 + AluJb SINE Alu 1 295 -17 2549 71 0 0 chr1 102174606 102174916 -140489437 + AluY SINE Alu 1 310 -1 1318 194 94 6 chr1 102176544 102176863 -140487490 + L1MC4a LINE L1 7009 7355 -453 1787 148 3 0 chr1 102176864 102177148 -140487205 + L1PA16 LINE L1 5873 6157 -9 1584 150 4 4 chr1 102177187 102177440 -140486913 + AluJb SINE Alu 8 260 -52 307 325 49 0 chr1 102177599 102177762 -140486591 + MARNA DNA Mariner 195 365 -221 195 286 242 0 chr1 102177762 102177853 -140486500 - MIR SINE MIR -66 196 84 2125 140 3 20 chr1 102177901 102178244 -140486109 + MER1B DNA MER1_type 1 337 0 234 275 88 0 chr1 102178284 102178364 -140485989 + MARNA DNA Mariner 409 495 -91 839 151 41 12 chr1 102178454 102178626 -140485727 - L1MC3 LINE L1 -8 7777 7601 1402 113 20 116 chr1 102178631 102178932 -140485421 - L1MC3 LINE L1 -323 7462 7191 303 364 64 16 chr1 102178955 102179142 -140485211 + L2 LINE L2 2594 2789 -525 3638 196 93 64 chr1 102179143 102180029 -140484324 + L1MC4 LINE L1 6806 7734 -308 549 52 39 0 chr1 102180029 102180106 -140484247 - MADE1 DNA Mariner 0 80 1 3638 196 93 64 chr1 102180106 102180360 -140483993 + L1MC4 LINE L1 7734 7979 -63 307 231 149 32 chr1 102180460 102180630 -140483723 + L2 LINE L2 2627 2994 -278 564 236 149 23 chr1 102180640 102180814 -140483539 + MER3 DNA MER1_type 10 205 -4 895 129 0 0 chr1 102180919 102181043 -140483310 - AluJb SINE Alu -188 124 1 658 314 102 23 chr1 102181046 102181399 -140482954 + L2 LINE L2 2881 3261 -52 1871 110 85 11 chr1 102181411 102181693 -140482660 + AluSx SINE Alu 1 303 -9 225 239 168 35 chr1 102181776 102181889 -140482464 - Charlie2a DNA MER1_type -2 2860 2733 579 226 72 11 chr1 102181902 102182083 -140482270 - Charlie2a DNA MER1_type -1199 1663 1472 32562 78 8 7 chr1 102182153 102187264 -140477089 + L1PA5 LINE L1 826 6149 -5 410 70 0 0 chr1 102187264 102187320 -140477033 + L1PA5 LINE L1 6097 6153 -1 631 272 4 67 chr1 102187370 102187624 -140476729 - Charlie2 DNA MER1_type -2447 335 98 371 257 28 0 chr1 102187986 102188095 -140476258 + L1P5 LINE L1 5355 5466 -690 1664 189 0 20 chr1 102188304 102188600 -140475753 - AluJb SINE Alu -22 290 1 1611 161 46 11 chr1 102188824 102189109 -140475244 - AluJo SINE Alu -17 295 1 1693 181 20 23 chr1 102189282 102189581 -140474772 - AluJb SINE Alu -14 298 1 296 286 79 30 chr1 102189615 102190022 -140474331 + L1MC5 LINE L1 7236 7490 -471 392 347 82 30 chr1 102190087 102190418 -140473935 + L1MC4 LINE L1 7695 8042 0 717 189 0 38 chr1 102191488 102191620 -140472733 - FLAM_A SINE Alu -5 128 2 1660 142 0 102 chr1 102192003 102192335 -140472018 + AluJo SINE Alu 3 300 -12 2187 130 0 10 chr1 102192911 102193218 -140471135 + AluSx SINE Alu 1 304 -8 789 254 26 10 chr1 102193422 102193615 -140470738 - MER58A DNA MER1_type -1 223 28 688 224 36 61 chr1 102193931 102194127 -140470226 + MIR SINE MIR 15 205 -57 1872 175 0 3 chr1 102194866 102195163 -140469190 - AluJb SINE Alu -16 296 1 1640 167 3 87 chr1 102195265 102195588 -140468765 + AluJb SINE Alu 3 298 -14 261 93 70 0 chr1 102195640 102195683 -140468670 + L1MA5A LINE L1 6248 6293 -4 2251 69 0 17 chr1 102195685 102196003 -140468350 + AluY SINE Alu 1 313 0 28 0 0 0 chr1 102196198 102196226 -140468127 + AT_rich Low_complexity Low_complexity 1 28 0 191 36 36 0 chr1 102196373 102196401 -140467952 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 1003 278 134 31 chr1 102197151 102197719 -140466634 - L2 LINE L2 0 3313 2695 703 258 116 65 chr1 102198076 102198463 -140465890 + L2 LINE L2 28 434 -2880 1807 150 42 10 chr1 102198470 102198776 -140465577 - MER7A DNA MER2_type -19 327 14 200 297 0 31 chr1 102199080 102199144 -140465209 + MIR SINE MIR 36 97 -111 582 30 0 0 chr1 102199799 102199866 -140464487 - U4 snRNA snRNA -78 67 1 23 0 0 0 chr1 102200012 102200035 -140464318 + AT_rich Low_complexity Low_complexity 1 23 0 240 287 52 47 chr1 102200108 102200227 -140464126 + MIR3 SINE MIR 5 129 -103 * 410 266 150 6 chr1 102200225 102200398 -140463955 - MIR SINE MIR -29 233 36 450 0 0 0 chr1 102201373 102201423 -140462930 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 2404 87 0 0 chr1 102201460 102201760 -140462593 + AluSq SINE Alu 1 300 -13 23 54 0 0 chr1 102202557 102202594 -140461759 + AT_rich Low_complexity Low_complexity 1 37 0 180 203 136 17 chr1 102202622 102202681 -140461672 + L3 LINE CR1 649 714 -863 1439 182 49 19 chr1 102202976 102203240 -140461113 + AluJo SINE Alu 1 272 -40 28 29 0 0 chr1 102203242 102203277 -140461076 + AT_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chr1 102203780 102203825 -140460528 + AT_rich Low_complexity Low_complexity 1 45 0 438 248 46 147 chr1 102204182 102204489 -140459864 + Charlie8 DNA MER1_type 41 316 -2101 195 241 138 0 chr1 102204548 102204606 -140459747 + MIR3 SINE MIR 115 180 -28 24 53 0 0 chr1 102205115 102205153 -140459200 + AT_rich Low_complexity Low_complexity 1 38 0 2032 217 87 26 chr1 102205769 102205836 -140458517 + L1ME2 LINE L1 4990 5052 -1114 2527 61 10 0 chr1 102205836 102206146 -140458207 + AluSp SINE Alu 1 313 0 2032 217 87 26 chr1 102206146 102206990 -140457363 + L1ME2 LINE L1 5052 5950 -216 * 3708 195 74 18 chr1 102206987 102208071 -140456282 + L1MB7 LINE L1 5039 6176 -8 438 203 44 121 chr1 102208105 102208287 -140456066 + L1ME2 LINE L1 5991 6158 -6 1512 160 4 23 chr1 102209037 102209293 -140455060 + AluJb SINE Alu 41 291 -21 317 374 11 11 chr1 102210086 102210265 -140454088 - L2 LINE L2 -939 2375 2197 918 153 0 0 chr1 102210468 102210599 -140453754 + AluJb SINE Alu 160 290 -22 1460 201 93 0 chr1 102210740 102211074 -140453279 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr1 102211474 102211503 -140452850 + AT_rich Low_complexity Low_complexity 1 29 0 260 211 14 14 chr1 102211784 102211855 -140452498 - MER33 DNA MER1_type 0 324 254 24 67 0 0 chr1 102211857 102211902 -140452451 + AT_rich Low_complexity Low_complexity 1 45 0 595 156 83 0 chr1 102211915 102212024 -140452329 - FLAM_C SINE Alu -25 118 1 654 225 99 24 chr1 102212024 102212237 -140452116 - MER33 DNA MER1_type -89 235 7 2030 132 0 7 chr1 102212430 102212719 -140451634 + AluSx SINE Alu 1 287 -25 1630 200 0 3 chr1 102213538 102213823 -140450530 - AluJo SINE Alu -23 289 6 2300 93 0 10 chr1 102213942 102214242 -140450111 - AluSx SINE Alu -11 301 5 31860 83 19 21 chr1 102214430 102220616 -140443737 + L1PA6 LINE L1 11 6143 -11 22 35 0 0 chr1 102220980 102221009 -140443344 + AT_rich Low_complexity Low_complexity 1 29 0 1117 124 163 0 chr1 102221011 102221244 -140443109 - L1MA8 LINE L1 -13 6278 6008 2034 50 0 4 chr1 102221254 102221512 -140442841 - L1PA4 LINE L1 -3 6152 5896 4559 168 63 33 chr1 102222270 102223309 -140441044 + MER11C LTR ERVK 1 1071 0 3731 239 109 63 chr1 102223354 102223463 -140440890 + L1ME2 LINE L1 45 147 -6249 1791 190 0 0 chr1 102223463 102223758 -140440595 + AluJb SINE Alu 1 295 -17 3731 239 109 63 chr1 102223758 102224455 -140439898 + L1ME2 LINE L1 147 810 -5586 1485 160 0 0 chr1 102224455 102224674 -140439679 + AluJb SINE Alu 78 296 -16 3731 239 109 63 chr1 102224674 102225995 -140438358 + L1ME2 LINE L1 810 2272 -4124 1478 137 39 25 chr1 102226006 102226291 -140438062 + L1MB7 LINE L1 5854 6142 -42 423 289 103 50 chr1 102226320 102226562 -140437791 + MLT1I LTR MaLR 93 347 -62 952 261 95 5 chr1 102226569 102226676 -140437677 + L1ME2 LINE L1 2223 2319 -3896 1590 181 76 10 chr1 102226676 102226964 -140437389 + AluJo SINE Alu 6 312 0 952 261 95 5 chr1 102226964 102227266 -140437087 + L1ME2 LINE L1 2319 2669 -3546 4067 186 5 21 chr1 102227275 102227312 -140437041 + MER44D DNA MER2_type 2 38 -2449 2209 109 0 22 chr1 102227312 102227624 -140436729 - AluSx SINE Alu -6 306 2 4067 186 5 21 chr1 102227624 102228329 -140436024 + MER44D DNA MER2_type 38 604 -1 758 204 33 33 chr1 102228464 102228675 -140435678 + MER2 DNA MER2_type 1 211 -134 2806 213 165 45 chr1 102228783 102229022 -140435331 + L1ME2 LINE L1 3808 4017 -2198 1504 183 41 17 chr1 102229022 102229317 -140435036 + AluJb SINE Alu 2 303 -9 2806 213 165 45 chr1 102229317 102229341 -140435012 + L1ME2 LINE L1 4017 4037 -2178 1620 190 33 20 chr1 102229341 102229641 -140434712 + AluJo SINE Alu 1 304 -8 2806 213 165 45 chr1 102229641 102229979 -140434374 + L1ME2 LINE L1 4037 4333 -1882 2020 142 17 0 chr1 102229979 102230275 -140434078 + AluSx SINE Alu 1 301 -11 2806 213 165 45 chr1 102230275 102230953 -140433400 + L1ME2 LINE L1 4333 5244 -971 2233 100 3 3 chr1 102231556 102231857 -140432496 + AluSg SINE Alu 1 301 -9 850 127 0 63 chr1 102231868 102232010 -140432343 + FLAM_C SINE Alu 1 133 0 1880 144 3 30 chr1 102232344 102232649 -140431704 - AluSx SINE Alu -15 297 1 449 270 145 16 chr1 102232760 102233008 -140431345 - MLT1I LTR MaLR -62 347 68 217 352 24 24 chr1 102233064 102233189 -140431164 - MIR3 SINE MIR -34 174 50 689 93 0 0 chr1 102233403 102233500 -140430853 - AluY SINE Alu -7 304 208 794 220 208 0 chr1 102233624 102234399 -140429954 + L1ME2 LINE L1 5228 6184 -49 373 267 69 0 chr1 102234312 102234443 -140429910 + L1MA10 LINE L1 6260 6399 -4 * 251 93 47 35 chr1 102234512 102234598 -140429755 + (TA)n Simple_repeat Simple_repeat 2 88 0 369 130 37 31 chr1 102234638 102234799 -140429554 + (TATAA)n Simple_repeat Simple_repeat 4 165 0 243 234 65 0 chr1 102235909 102235986 -140428367 - MER112 DNA MER1_type -175 85 4 472 339 91 42 chr1 102236017 102236401 -140427952 + L3 LINE CR1 1163 1565 -12 2360 89 0 3 chr1 102237927 102238230 -140426123 + AluSq SINE Alu 1 302 -11 1407 162 53 0 chr1 102238282 102238547 -140425806 + L1MB7 LINE L1 5887 6165 -19 220 182 45 0 chr1 102239571 102239615 -140424738 + (TATG)n Simple_repeat Simple_repeat 2 47 0 199 245 94 0 chr1 102239619 102239672 -140424681 - L2 LINE L2 -10 3262 3205 847 242 75 9 chr1 102239981 102240208 -140424145 - MIR SINE MIR -10 252 11 251 256 73 24 chr1 102240656 102240738 -140423615 - MIR SINE MIR -64 198 113 3872 138 78 63 chr1 102240755 102241172 -140423181 + L1MB3 LINE L1 4985 5394 -789 862 145 0 0 chr1 102241172 102241296 -140423057 - FLAM_A SINE Alu -9 124 1 3872 138 78 63 chr1 102241296 102241328 -140423025 + L1MB3 LINE L1 5394 5424 -759 2292 101 0 0 chr1 102241328 102241624 -140422729 + AluSq SINE Alu 1 296 -17 3872 138 78 63 chr1 102241624 102242008 -140422345 + L1MB3 LINE L1 5424 5801 -382 2331 86 3 0 chr1 102242008 102242299 -140422054 + AluSx SINE Alu 1 292 -20 3872 138 78 63 chr1 102242299 102242626 -140421727 + L1MB3 LINE L1 5801 6179 -4 2046 211 154 37 chr1 102242647 102243519 -140420834 - L1MEd LINE L1 -2848 3281 2308 414 0 0 0 chr1 102243536 102243582 -140420771 + (CA)n Simple_repeat Simple_repeat 1 46 0 410 267 103 14 chr1 102243625 102243771 -140420582 - L1MEd LINE L1 -5960 159 1 1828 137 20 30 chr1 102243875 102244174 -140420179 - AluJb SINE Alu -16 296 1 1665 171 29 0 chr1 102244477 102244757 -140419596 + AluJo SINE Alu 11 298 -14 1016 205 96 46 chr1 102244887 102245238 -140419115 + MER57A LTR ERV1 50 399 -4 1679 155 16 26 chr1 102245379 102245683 -140418670 + AluJb SINE Alu 1 301 -11 1107 154 12 0 chr1 102245683 102245845 -140418508 + AluJb SINE Alu 134 297 -15 1127 183 114 24 chr1 102245992 102246282 -140418071 - MER2 DNA MER2_type -16 329 14 1109 178 31 108 chr1 102246304 102246367 -140417986 - MLT1C LTR MaLR -4 463 397 2278 123 0 0 chr1 102246367 102246675 -140417678 + AluSx SINE Alu 1 308 -4 1109 178 31 108 chr1 102246675 102247028 -140417325 - MLT1C LTR MaLR -70 397 1 1109 219 85 27 chr1 102247028 102247500 -140416853 + MLT1G3 LTR MaLR 20 555 0 2449 93 3 0 chr1 102247720 102248032 -140416321 + AluSp SINE Alu 1 313 0 274 306 0 24 chr1 102248424 102248509 -140415844 + L2 LINE L2 3185 3267 -5 182 133 0 22 chr1 102248519 102248564 -140415789 + (TA)n Simple_repeat Simple_repeat 1 44 0 640 230 109 94 chr1 102248845 102249250 -140415103 + L1MEd LINE L1 638 1048 -5071 2179 228 80 62 chr1 102249670 102249804 -140414549 - HAL1 LINE L1 -221 2286 2156 2471 78 0 0 chr1 102249804 102250110 -140414243 + AluY SINE Alu 1 306 -5 2179 228 80 62 chr1 102250110 102250668 -140413685 - HAL1 LINE L1 -351 2156 1610 1956 128 3 14 chr1 102250668 102250958 -140413395 + AluSx SINE Alu 3 289 -23 2179 228 80 62 chr1 102250958 102251130 -140413223 - HAL1 LINE L1 -897 1610 1400 2172 99 0 14 chr1 102251130 102251414 -140412939 - AluSx SINE Alu -32 280 1 2179 228 80 62 chr1 102251414 102251490 -140412863 - HAL1 LINE L1 -1107 1400 1327 535 175 26 26 chr1 102251657 102251771 -140412582 + LTR45 LTR ERV1 412 525 0 422 389 69 27 chr1 102251777 102252109 -140412244 - L2 LINE L2 -2 3270 2925 673 167 0 0 chr1 102252155 102252257 -140412096 + FLAM_C SINE Alu 13 114 -29 258 81 0 0 chr1 102252257 102252294 -140412059 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 1157 172 59 50 chr1 102252299 102252619 -140411734 - MER33 DNA MER1_type -1 323 1 235 259 141 96 chr1 102253185 102253320 -140411033 - L2 LINE L2 -5 3267 3127 2069 229 78 0 chr1 102253344 102253820 -140410533 - MLT1F LTR MaLR -29 513 1 189 0 0 0 chr1 102254004 102254025 -140410328 + (T)n Simple_repeat Simple_repeat 1 21 0 2052 142 0 7 chr1 102254062 102254372 -140409981 + AluSx SINE Alu 1 308 -4 2197 122 0 19 chr1 102256556 102256868 -140407485 + AluSx SINE Alu 1 306 -6 366 248 26 0 chr1 102256869 102256986 -140407367 + L1ME LINE L1 5703 5822 -299 2089 133 0 3 chr1 102257223 102257524 -140406829 + AluJb SINE Alu 1 300 -12 1693 151 65 4 chr1 102257892 102258171 -140406182 + AluSx SINE Alu 1 296 -16 1889 147 64 80 chr1 102258409 102258911 -140405442 - L1MB4 LINE L1 -7 6173 5680 2189 106 3 7 chr1 102259386 102259687 -140404666 + AluSx SINE Alu 1 300 -12 2460 62 0 7 chr1 102259711 102260016 -140404337 + AluY SINE Alu 1 303 -8 27 0 0 0 chr1 102260065 102260092 -140404261 + AT_rich Low_complexity Low_complexity 1 27 0 704 197 0 0 chr1 102260582 102260699 -140403654 - FLAM_A SINE Alu -18 124 8 526 228 187 29 chr1 102261250 102261421 -140402932 - MIR SINE MIR -7 255 58 1044 125 24 6 chr1 102261749 102261917 -140402436 + L1PB4 LINE L1 5986 6156 0 1686 166 14 20 chr1 102261920 102262215 -140402138 + AluJb SINE Alu 1 293 -19 29 28 0 0 chr1 102262257 102262293 -140402060 + AT_rich Low_complexity Low_complexity 1 36 0 281 156 0 0 chr1 102262354 102262399 -140401954 + Alu SINE Alu 4 48 -254 1010 178 0 0 chr1 102262399 102262556 -140401797 + AluJo/FRAM SINE Alu 131 287 -25 23 0 0 0 chr1 102262557 102262580 -140401773 + AT_rich Low_complexity Low_complexity 1 23 0 771 225 25 0 chr1 102262588 102262748 -140401605 + FRAM SINE Alu 1 164 -2 962 104 0 15 chr1 102264156 102264290 -140400063 - FLAM_C SINE Alu 0 133 2 1477 173 0 73 chr1 102264730 102265030 -140399323 + AluJo SINE Alu 1 278 -34 302 0 0 26 chr1 102265033 102265072 -140399281 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2136 180 118 18 chr1 102265613 102265727 -140398626 + MER44D DNA MER2_type 1 102 -2385 2207 116 0 3 chr1 102265727 102266030 -140398323 + AluSx SINE Alu 1 302 -10 2136 180 118 18 chr1 102266030 102266414 -140397939 + MER44D DNA MER2_type 102 604 -1 21 57 0 0 chr1 102266517 102266552 -140397801 + AT_rich Low_complexity Low_complexity 1 35 0 215 305 17 0 chr1 102266587 102266646 -140397707 + MIR SINE MIR 70 129 -133 2134 139 0 0 chr1 102266725 102267026 -140397327 + AluSx SINE Alu 1 301 -11 398 278 98 63 chr1 102267428 102267516 -140396837 + L2 LINE L2 1617 1700 -1614 1881 168 0 13 chr1 102267516 102267825 -140396528 + AluJb SINE Alu 1 305 -7 398 278 98 63 chr1 102267825 102268103 -140396250 + L2 LINE L2 1700 1996 -1318 239 205 18 108 chr1 102268119 102268285 -140396068 - L1ME4a LINE L1 -45 6076 5926 1580 196 86 52 chr1 102268432 102268531 -140395822 + MLT1D LTR MaLR 26 120 -385 2178 91 10 20 chr1 102268531 102268829 -140395524 + AluY SINE Alu 1 295 -16 1580 196 86 52 chr1 102268829 102269193 -140395160 + MLT1D LTR MaLR 120 505 0 397 256 48 48 chr1 102269213 102269390 -140394963 - L1ME4a LINE L1 -549 5810 5622 2436 67 3 0 chr1 102269436 102269734 -140394619 + AluY SINE Alu 1 299 -12 2034 120 38 0 chr1 102269750 102270041 -140394312 - AluSx SINE Alu -9 303 2 210 312 116 11 chr1 102270081 102270270 -140394083 + L2 LINE L2 1983 2191 -1123 1302 99 0 6 chr1 102270525 102270696 -140393657 - AluSg/x SINE Alu -4 308 139 2426 84 3 0 chr1 102270782 102271078 -140393275 - AluSg SINE Alu -13 297 1 1332 80 0 0 chr1 102271241 102271404 -140392949 + AluY SINE Alu 1 163 -148 1383 197 94 34 chr1 102271411 102271547 -140392806 + L1ME2 LINE L1 5570 5696 -468 2227 112 0 10 chr1 102271547 102271851 -140392502 + AluSq SINE Alu 1 301 -12 2166 97 38 0 chr1 102271852 102272141 -140392212 + AluSp SINE Alu 1 300 -13 1383 197 94 34 chr1 102272141 102272383 -140391970 + L1ME2 LINE L1 5695 5973 -191 1057 178 79 5 chr1 102272385 102272587 -140391766 + AluJo SINE Alu 85 301 -11 1940 160 0 19 chr1 102272669 102272981 -140391372 + AluJo SINE Alu 1 306 -6 477 157 181 0 chr1 102272989 102273072 -140391281 - Tigger7 DNA MER2_type -2389 98 1 1822 152 49 52 chr1 102274010 102274074 -140390279 + MER7A DNA MER2_type 1 64 -2974 2054 143 3 0 chr1 102274074 102274368 -140389985 + AluSx SINE Alu 3 297 -15 1822 152 49 52 chr1 102274368 102274652 -140389701 + MER7A DNA MER2_type 64 346 0 2586 57 0 0 chr1 102274753 102275052 -140389301 + AluY SINE Alu 1 299 -12 2154 114 0 32 chr1 102275562 102275730 -140388623 - AluSx SINE Alu -14 298 143 2605 54 3 0 chr1 102275730 102276028 -140388325 - AluY SINE Alu -12 299 1 2154 114 0 32 chr1 102276028 102276167 -140388186 - AluSx SINE Alu -169 143 1 26 0 0 0 chr1 102276176 102276202 -140388151 + AT_rich Low_complexity Low_complexity 1 26 0 285 296 56 24 chr1 102276498 102276623 -140387730 + HAL1 LINE L1 47 175 -2332 * 1278 241 167 64 chr1 102276620 102276836 -140387517 + HAL1 LINE L1 1 193 -2314 2381 78 0 3 chr1 102276836 102277132 -140387221 - AluSc SINE Alu -14 295 1 1278 241 167 64 chr1 102277132 102277591 -140386762 + HAL1 LINE L1 193 746 -1761 333 164 0 0 chr1 102277595 102277650 -140386703 - MER5B DNA MER1_type -7 171 117 608 220 136 31 chr1 102277650 102277841 -140386512 + L1ME2 LINE L1 5948 6158 -6 304 252 146 0 chr1 102277853 102277956 -140386397 - MER5B DNA MER1_type -60 118 1 886 222 70 33 chr1 102277995 102278166 -140386187 + HAL1 LINE L1 772 956 -1551 1989 139 17 0 chr1 102278166 102278461 -140385892 + AluSx SINE Alu 1 300 -12 886 222 70 33 chr1 102278461 102278532 -140385821 + HAL1 LINE L1 956 1023 -1484 267 111 0 67 chr1 102278610 102278655 -140385698 + MER57A LTR ERV1 295 336 -67 32 0 0 0 chr1 102278661 102278693 -140385660 + AT_rich Low_complexity Low_complexity 1 32 0 285 292 18 95 chr1 102278693 102278861 -140385492 + HAL1 LINE L1 239 393 -2114 1946 146 64 14 chr1 102278910 102279267 -140385086 + THE1C LTR MaLR 1 375 0 1188 207 100 101 chr1 102279391 102279652 -140384701 + L1ME2 LINE L1 4704 4964 -1198 462 221 82 16 chr1 102279652 102279774 -140384579 + FLAM_C SINE Alu 1 130 -3 2498 74 0 0 chr1 102279779 102280076 -140384277 - AluSg SINE Alu -13 297 1 1188 207 100 101 chr1 102280076 102280155 -140384198 + L1ME2 LINE L1 4968 5046 -1116 1590 161 65 21 chr1 102280155 102280434 -140383919 + AluJb SINE Alu 5 295 -17 1188 207 100 101 chr1 102280434 102280593 -140383760 + L1ME2 LINE L1 5046 5204 -958 2008 142 3 22 chr1 102280593 102280904 -140383449 + AluJb SINE Alu 1 305 -7 2294 104 3 0 chr1 102280904 102281203 -140383150 + AluSc SINE Alu 1 300 -9 1188 207 100 101 chr1 102281203 102281678 -140382675 + L1ME2 LINE L1 5202 5653 -509 244 107 223 125 chr1 102281679 102281742 -140382611 + L1ME3A LINE L1 6037 6092 -78 1929 156 0 3 chr1 102281742 102282044 -140382309 - AluJb SINE Alu -9 303 3 244 107 223 125 chr1 102282044 102282092 -140382261 + L1ME3A LINE L1 6092 6159 -11 1575 73 0 39 chr1 102282169 102282373 -140381980 + AluSx SINE Alu 1 196 -116 327 113 0 0 chr1 102282376 102282455 -140381898 + AluSx SINE Alu 249 327 -316 2327 85 10 3 chr1 102282455 102282760 -140381593 + AluSc SINE Alu 1 307 -2 327 113 0 0 chr1 102282760 102282771 -140381582 + AluSx SINE Alu 326 643 0 189 0 0 0 chr1 102283099 102283120 -140381233 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr1 102283651 102283675 -140380678 + GC_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr1 102283710 102283741 -140380612 + GC_rich Low_complexity Low_complexity 1 31 0 2244 82 0 38 chr1 102284720 102285035 -140379318 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr1 102285093 102285116 -140379237 + AT_rich Low_complexity Low_complexity 1 23 0 716 292 66 47 chr1 102285394 102285881 -140378472 + L2 LINE L2 2479 2974 -340 1835 166 3 29 chr1 102286372 102286686 -140377667 + AluJb SINE Alu 1 306 -6 936 180 102 20 chr1 102286851 102287106 -140377247 + L1ME2 LINE L1 5889 6164 0 1990 121 3 24 chr1 102287110 102287433 -140376920 + AluSx SINE Alu 1 317 0 2205 121 3 0 chr1 102287437 102287742 -140376611 + AluSg SINE Alu 1 306 -4 26 0 0 0 chr1 102287746 102287772 -140376581 + AT_rich Low_complexity Low_complexity 1 26 0 479 342 22 18 chr1 102287773 102288001 -140376352 - MIR SINE MIR -2 260 32 482 179 0 21 chr1 102288139 102288234 -140376119 - FLAM_A SINE Alu -5 137 45 2291 86 31 0 chr1 102288234 102288524 -140375829 - AluY SINE Alu -12 299 1 883 128 83 69 chr1 102288882 102288952 -140375401 - MER3 DNA MER1_type -1 208 141 1609 178 27 17 chr1 102288952 102289244 -140375109 + AluJo SINE Alu 1 295 -17 883 128 83 69 chr1 102289244 102289377 -140374976 - MER3 DNA MER1_type -68 141 2 1048 148 0 28 chr1 102289592 102289768 -140374585 + AluJb SINE Alu 134 304 -8 223 340 53 0 chr1 102290267 102290361 -140373992 + MIR SINE MIR 104 202 -60 204 299 175 0 chr1 102290474 102290571 -140373782 + MIR SINE MIR 56 169 -93 416 124 31 10 chr1 102291536 102291633 -140372720 + CT-rich Low_complexity Low_complexity 2 100 0 707 195 0 0 chr1 102292014 102292137 -140372216 - FLAM_A SINE Alu -10 132 10 298 219 177 0 chr1 102292163 102292259 -140372094 - MIR SINE MIR -21 241 129 221 139 23 0 chr1 102293093 102293136 -140371217 + GA-rich Low_complexity Low_complexity 3 46 0 203 303 61 0 chr1 102293136 102293202 -140371151 - L2 LINE L2 0 3313 3244 1628 230 84 44 chr1 102293250 102293367 -140370986 + MLT1F LTR MaLR 22 133 -409 2202 124 0 0 chr1 102293367 102293666 -140370687 + AluSx SINE Alu 1 299 -13 1628 230 84 44 chr1 102293666 102293978 -140370375 + MLT1F LTR MaLR 133 468 -74 384 167 0 45 chr1 102293970 102294036 -140370317 + AluJ/FRAM SINE Alu 228 290 -12 * 4238 179 40 6 chr1 102294048 102294482 -140369871 + L1MB4 LINE L1 5326 5744 -436 1832 92 0 8 chr1 102294482 102294722 -140369631 + AluSg/x SINE Alu 65 302 -10 4238 179 40 6 chr1 102294722 102295107 -140369246 + L1MB4 LINE L1 5744 6173 -7 856 186 66 0 chr1 102295335 102295502 -140368851 - AluJ SINE Alu -14 298 121 930 132 0 0 chr1 102295549 102295678 -140368675 - AluJ SINE Alu -181 131 3 833 250 68 23 chr1 102295685 102295736 -140368617 - L2 LINE L2 -239 3074 3027 2002 142 3 3 chr1 102295736 102296038 -140368315 + AluSq SINE Alu 1 302 -11 833 250 68 23 chr1 102296038 102296288 -140368065 - L2 LINE L2 -286 3027 2750 327 25 0 0 chr1 102296312 102296352 -140368001 + (TG)n Simple_repeat Simple_repeat 2 41 0 474 229 0 0 chr1 102296352 102296435 -140367918 - FAM SINE Alu -23 162 80 235 238 0 0 chr1 102296435 102296477 -140367876 - Alu SINE Alu -132 176 135 771 229 142 28 chr1 102296478 102296766 -140367587 - L2 LINE L2 -598 2716 2396 401 208 32 80 chr1 102296770 102296895 -140367458 + AluSq/x SINE Alu 33 151 -152 672 142 9 0 chr1 102296944 102297050 -140367303 + FRAM SINE Alu 18 124 -52 321 222 74 46 chr1 102297270 102297378 -140366975 - MLT1I LTR MaLR -21 388 278 198 0 0 0 chr1 102297450 102297472 -140366881 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 303 314 113 6 chr1 102297473 102297632 -140366721 - L2 LINE L2 -12 3301 3126 22 0 0 0 chr1 102297680 102297702 -140366651 + AT_rich Low_complexity Low_complexity 1 22 0 1302 86 0 0 chr1 102297713 102297876 -140366477 + AluSc SINE Alu 1 163 -146 1530 101 9 18 chr1 102297876 102298095 -140366258 + AluSg/x SINE Alu 83 299 -11 1818 160 24 0 chr1 102298103 102298390 -140365963 + AluJb SINE Alu 1 294 -18 185 65 32 0 chr1 102298575 102298606 -140365747 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2378 85 3 3 chr1 102298827 102299134 -140365219 - AluSx SINE Alu -4 308 2 2271 98 3 25 chr1 102299138 102299453 -140364900 - AluSc SINE Alu -1 308 1 835 165 0 0 chr1 102299472 102299599 -140364754 - FLAM_C SINE Alu -16 127 1 301 316 124 39 chr1 102299706 102299839 -140364514 + L1MDa LINE L1 1705 1825 -4715 2542 62 3 0 chr1 102299839 102300147 -140364206 + AluY SINE Alu 1 309 -2 2333 115 0 6 chr1 102300157 102300471 -140363882 + AluSx SINE Alu 1 312 0 301 316 124 39 chr1 102300471 102300608 -140363745 + L1MDa LINE L1 1833 2010 -4530 247 263 9 5 chr1 102300612 102300732 -140363621 - MER5A DNA MER1_type 0 189 18 1125 169 0 0 chr1 102301024 102301207 -140363146 - MER5A DNA MER1_type 0 189 7 2290 104 7 0 chr1 102301319 102301617 -140362736 - AluSx SINE Alu -12 300 1 252 208 19 0 chr1 102301622 102301675 -140362678 - L1MC5 LINE L1 -178 7783 7730 1609 152 52 11 chr1 102301804 102302073 -140362280 + AluJb SINE Alu 1 280 -32 285 29 0 0 chr1 102302075 102302109 -140362244 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 400 229 21 64 chr1 102302405 102302495 -140361858 - L1ME4a LINE L1 0 6121 6042 809 213 30 0 chr1 102302495 102302659 -140361694 + FAM SINE Alu 1 169 -6 400 229 21 64 chr1 102302659 102302756 -140361597 - L1ME4a LINE L1 -79 6042 5942 2145 106 0 0 chr1 102302845 102303127 -140361226 - AluSx SINE Alu -30 282 1 503 223 117 56 chr1 102303137 102303334 -140361019 - L2 LINE L2 -1102 2212 2004 696 181 17 0 chr1 102303370 102303486 -140360867 + FLAM_C SINE Alu 2 119 -24 311 0 0 25 chr1 102303486 102303526 -140360827 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 245 118 274 0 chr1 102303529 102303580 -140360773 - L2 LINE L2 -1347 1967 1903 841 158 8 0 chr1 102303923 102304050 -140360303 + AluJo SINE Alu 6 133 -179 734 229 20 0 chr1 102304104 102304257 -140360096 + AluJo SINE Alu 142 297 -15 309 237 53 26 chr1 102304268 102304382 -140359971 - MER65A LTR ERV1 -328 117 1 2018 232 51 34 chr1 102304385 102304611 -140359742 - L2 LINE L2 -1410 1904 1683 2737 88 3 0 chr1 102304611 102304965 -140359388 + THE1A LTR MaLR 1 355 0 2018 232 51 34 chr1 102304965 102305325 -140359028 - L2 LINE L2 -1631 1683 1308 1927 185 3 22 chr1 102305331 102305688 -140358665 + MLT1A1 LTR MaLR 16 365 0 2267 122 0 0 chr1 102305707 102306010 -140358343 + AluSx SINE Alu 1 303 -9 1238 162 12 117 chr1 102306132 102306466 -140357887 - AluJo SINE Alu 0 302 4 2418 54 20 10 chr1 102306466 102306763 -140357590 - AluY SINE Alu -11 300 1 1318 159 43 0 chr1 102307095 102307303 -140357050 - AluJb SINE Alu -11 301 85 2058 201 43 38 chr1 102308224 102308667 -140355686 - MLT2C2 LTR ERVL -19 445 1 227 221 0 150 chr1 102308694 102308807 -140355546 - MIR SINE MIR -28 234 139 2408 71 0 0 chr1 102308841 102309154 -140355199 - AluY SINE Alu 0 314 2 549 264 14 21 chr1 102309154 102309298 -140355055 - MIR SINE MIR -99 163 21 2084 38 0 0 chr1 102309722 102309959 -140354394 - AluY SINE Alu -8 303 67 1928 159 13 0 chr1 102310498 102310806 -140353547 + AluJb SINE Alu 1 312 0 331 54 71 0 chr1 102310818 102310874 -140353479 + GA-rich Low_complexity Low_complexity 3 62 0 24 0 0 0 chr1 102310885 102310909 -140353444 + AT_rich Low_complexity Low_complexity 1 24 0 291 224 0 0 chr1 102310909 102310967 -140353386 + MSTD LTR MaLR 40 97 -331 757 251 30 0 chr1 102310968 102311171 -140353182 - L1M1 LINE L1 -4840 2725 2517 3832 172 25 31 chr1 102311174 102311601 -140352752 + L1MA6 LINE L1 4769 5197 -1103 2280 109 0 0 chr1 102311601 102311895 -140352458 + AluSx SINE Alu 1 294 -18 3832 172 25 31 chr1 102311895 102312941 -140351412 + L1MA6 LINE L1 5197 6290 -10 1183 211 88 27 chr1 102312954 102313009 -140351344 + MSTD LTR MaLR 85 135 -261 1816 171 0 13 chr1 102313009 102313173 -140351180 - AluJo SINE Alu -15 297 137 1788 154 3 42 chr1 102313173 102313485 -140350868 - AluSx SINE Alu -12 300 1 1816 171 0 13 chr1 102313485 102313619 -140350734 - AluJo SINE Alu -175 137 3 1183 211 88 27 chr1 102313619 102313857 -140350496 + MSTD LTR MaLR 135 396 0 340 253 33 0 chr1 102313900 102313991 -140350362 - MIR SINE MIR -69 193 100 2290 115 0 0 chr1 102314248 102314553 -140349800 - AluSx SINE Alu -7 305 1 987 172 31 0 chr1 102314599 102314803 -140349550 - AluJb SINE Alu 0 325 117 285 75 0 0 chr1 102314960 102315000 -140349353 + (TG)n Simple_repeat Simple_repeat 2 41 0 825 145 0 0 chr1 102315000 102315117 -140349236 - AluJb SINE Alu -195 117 1 419 259 36 93 chr1 102315686 102315825 -140348528 - AluJo SINE Alu -160 142 18 203 0 0 36 chr1 102317538 102317566 -140346787 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1939 127 0 62 chr1 102317583 102317721 -140346632 + AluSx SINE Alu 1 146 -166 2329 115 0 0 chr1 102317721 102318033 -140346320 + AluSx SINE Alu 1 312 0 1939 127 0 62 chr1 102318033 102318217 -140346136 + AluSx SINE Alu 146 303 -9 922 128 0 0 chr1 102318223 102318348 -140346005 + FLAM_C SINE Alu 1 125 -18 1816 160 24 3 chr1 102318356 102318644 -140345709 + AluJo SINE Alu 1 294 -18 1309 252 151 26 chr1 102318771 102319538 -140344815 - L2 LINE L2 -18 3295 2443 258 105 0 0 chr1 102320137 102320175 -140344178 + (TA)n Simple_repeat Simple_repeat 1 38 0 246 281 0 0 chr1 102320179 102320268 -140344085 - L1MC4 LINE L1 -1340 6702 6614 244 311 0 0 chr1 102320250 102320340 -140344013 + L1MC4 LINE L1 6614 6703 -1339 * 251 264 46 0 chr1 102320306 102320393 -140343960 - L1MC4 LINE L1 -1339 6703 6613 435 152 0 0 chr1 102320395 102320474 -140343879 + (TA)n Simple_repeat Simple_repeat 2 80 0 2339 82 0 3 chr1 102320513 102320807 -140343546 - AluSg SINE Alu -17 293 1 2435 79 7 0 chr1 102321036 102321341 -140343012 - AluSx SINE Alu -5 307 1 880 163 0 0 chr1 102321550 102321685 -140342668 + AluSg/x SINE Alu 158 292 -20 897 153 0 29 chr1 102321689 102321826 -140342527 - FLAM_C SINE Alu 0 133 1 913 201 6 0 chr1 102321947 102322111 -140342242 + FRAM SINE Alu 1 165 -11 1709 232 28 110 chr1 102322181 102322292 -140342061 + Zaphod DNA AcHobo 2 120 -3911 2179 117 3 3 chr1 102322292 102322600 -140341753 + AluSg SINE Alu 1 308 -2 1709 232 28 110 chr1 102322600 102323053 -140341300 + Zaphod DNA AcHobo 120 520 -3511 3172 179 61 136 chr1 102323056 102323229 -140341124 + Zaphod DNA AcHobo 2721 2905 -1126 2104 126 0 3 chr1 102323229 102323522 -140340831 - AluJb SINE Alu -20 292 1 3172 179 61 136 chr1 102323522 102323551 -140340802 + Zaphod DNA AcHobo 2905 2935 -1096 2206 95 0 14 chr1 102323551 102323845 -140340508 + AluSc SINE Alu 4 293 -16 3172 179 61 136 chr1 102323845 102324247 -140340106 + Zaphod DNA AcHobo 2935 3365 -666 2388 87 0 7 chr1 102324247 102324556 -140339797 + AluSc SINE Alu 1 307 -2 3172 179 61 136 chr1 102324556 102324799 -140339554 + Zaphod DNA AcHobo 3365 3562 -469 771 107 0 0 chr1 102324799 102324902 -140339451 + AluJb SINE Alu 5 107 -205 3172 179 61 136 chr1 102324902 102325179 -140339174 + Zaphod DNA AcHobo 3562 3858 -173 2438 76 7 0 chr1 102325179 102325483 -140338870 - AluY SINE Alu -5 306 1 1638 175 10 14 chr1 102325586 102325877 -140338476 + AluJo SINE Alu 11 300 -12 1413 189 14 44 chr1 102325883 102325998 -140338355 + AluJo SINE Alu 1 118 -194 2487 74 0 0 chr1 102325998 102326297 -140338056 - AluY SINE Alu -12 299 1 1413 189 14 44 chr1 102326297 102326478 -140337875 + AluJo SINE Alu 118 288 -24 1224 102 51 113 chr1 102326609 102326883 -140337470 - L1MA8 LINE L1 -11 6280 6024 761 140 38 25 chr1 102327069 102327226 -140337127 - MLT1A1 LTR MaLR -47 318 160 2292 100 0 0 chr1 102327284 102327584 -140336769 - AluSg SINE Alu -10 300 1 1716 185 7 7 chr1 102327671 102327974 -140336379 - AluJb SINE Alu -9 303 1 2069 180 28 136 chr1 102327984 102328289 -140336064 - L1MC4 LINE L1 0 8042 7860 2343 82 3 10 chr1 102328289 102328583 -140335770 + AluSp SINE Alu 1 292 -21 2069 180 28 136 chr1 102328583 102329003 -140335350 - L1MC4 LINE L1 -182 7860 7396 776 133 7 44 chr1 102329003 102329138 -140335215 - FLAM_C SINE Alu 0 143 14 259 254 0 30 chr1 102329139 102329206 -140335147 - L1MC4 LINE L1 -632 7410 7346 855 150 0 0 chr1 102329428 102329555 -140334798 - AluJb SINE Alu -185 127 1 2379 77 7 0 chr1 102329566 102329865 -140334488 - AluSc SINE Alu -8 301 1 387 279 0 0 chr1 102329885 102329971 -140334382 + Zaphod DNA AcHobo 3946 4031 0 21 0 0 0 chr1 102330631 102330652 -140333701 + AT_rich Low_complexity Low_complexity 1 21 0 477 0 0 0 chr1 102330680 102330733 -140333620 + (CAAAA)n Simple_repeat Simple_repeat 4 56 0 1213 138 18 14 chr1 102330993 102331211 -140333142 + L1MA5 LINE L1 5977 6195 -105 524 253 130 12 chr1 102331309 102331471 -140332882 + MIR SINE MIR 2 182 -80 306 218 30 89 chr1 102331492 102331593 -140332760 - MLT1H LTR MaLR -1 548 454 1699 188 3 28 chr1 102331754 102332074 -140332279 - AluJo SINE Alu 0 312 1 267 234 178 19 chr1 102332118 102332210 -140332143 - MLT1I LTR MaLR -285 124 11 1235 204 9 13 chr1 102332210 102332435 -140331918 - MER58A DNA MER1_type 0 224 1 267 234 178 19 chr1 102332435 102332449 -140331904 - MLT1I LTR MaLR -398 11 1 329 229 42 0 chr1 102332453 102332549 -140331804 + MIR SINE MIR 163 262 0 232 303 25 34 chr1 102332554 102332673 -140331680 + L1P1 LINE L1 5696 5813 -342 781 173 0 24 chr1 102332728 102332855 -140331498 + FLAM_C SINE Alu 5 128 -5 1934 145 7 0 chr1 102332870 102333159 -140331194 - AluJo SINE Alu -21 291 1 322 229 42 17 chr1 102334267 102334426 -140329927 + MER3 DNA MER1_type 1 209 0 252 255 274 29 chr1 102334467 102334569 -140329784 + MER5A DNA MER1_type 59 185 -4 2178 113 0 23 chr1 102334571 102334880 -140329473 + AluSq SINE Alu 1 302 -11 1905 121 0 4 chr1 102334977 102335241 -140329112 + AluJb SINE Alu 30 292 -20 657 229 47 0 chr1 102335244 102335414 -140328939 - Zaphod DNA AcHobo -1133 2898 2721 1709 232 28 110 chr1 102335417 102335870 -140328483 - Zaphod DNA AcHobo -3511 520 120 2144 117 3 7 chr1 102335870 102336179 -140328174 - AluSg SINE Alu -2 308 1 1709 232 28 110 chr1 102336179 102336290 -140328063 - Zaphod DNA AcHobo -3911 120 2 913 201 6 0 chr1 102336360 102336524 -140327829 - FRAM SINE Alu -11 165 1 421 146 0 0 chr1 102336660 102336715 -140327638 + AluJ/FLAM SINE Alu 12 66 -246 275 276 92 11 chr1 102337564 102337651 -140326702 - MIR SINE MIR -63 145 52 1646 188 0 3 chr1 102340335 102340623 -140323730 - AluJo SINE Alu -13 299 13 2180 131 0 7 chr1 102340652 102340957 -140323396 - AluSx SINE Alu -9 303 1 2085 104 13 29 chr1 102341630 102341946 -140322407 - AluSx SINE Alu -1 311 1 827 138 0 36 chr1 102342130 102342268 -140322085 - FLAM_C SINE Alu 0 133 1 313 252 175 0 chr1 102342466 102342569 -140321784 - L2 LINE L2 -15 3257 3137 528 160 30 0 chr1 102342608 102342708 -140321645 + MER53 DNA DNA 1 103 -86 990 309 117 60 chr1 102342777 102343689 -140320664 - L2 LINE L2 -214 3058 2050 1565 139 13 4 chr1 102343689 102343926 -140320427 + AluJb SINE Alu 50 288 -24 990 309 117 60 chr1 102343926 102344056 -140320297 - L2 LINE L2 -1222 2050 1929 2031 148 0 0 chr1 102344093 102344398 -140319955 + AluSx SINE Alu 1 305 -7 955 246 101 4 chr1 102344427 102344703 -140319650 + L1M4 LINE L1 3890 4192 -1954 2196 85 7 0 chr1 102344923 102345205 -140319148 + AluSp SINE Alu 6 289 -24 23 33 0 0 chr1 102345205 102345235 -140319118 + AT_rich Low_complexity Low_complexity 1 30 0 449 257 127 58 chr1 102345256 102345529 -140318824 - L1M4 LINE L1 -2620 3526 3273 1963 149 10 3 chr1 102345529 102345837 -140318516 - AluJb SINE Alu -2 310 1 449 257 127 58 chr1 102345837 102345918 -140318435 - L1M4 LINE L1 -2873 3273 3199 1619 170 34 27 chr1 102345918 102346212 -140318141 - AluJo SINE Alu -11 301 6 449 257 127 58 chr1 102346212 102346528 -140317825 - L1M4 LINE L1 -2947 3199 2809 683 268 119 13 chr1 102347199 102347434 -140316919 + MIR SINE MIR 2 261 -1 2008 163 0 0 chr1 102347452 102347753 -140316600 + AluJb SINE Alu 4 304 -8 347 289 110 6 chr1 102347792 102347965 -140316388 - HAL1b LINE L1 -655 693 503 260 293 27 0 chr1 102348019 102348094 -140316259 - MIR SINE MIR -73 189 113 557 234 14 21 chr1 102348096 102348241 -140316112 - HAL1b LINE L1 -851 497 354 1895 88 20 4 chr1 102348356 102348607 -140315746 - AluSx SINE Alu -57 255 1 1603 184 58 56 chr1 102348753 102349149 -140315204 + MLT2C1 LTR ERVL 1 397 0 448 232 208 22 chr1 102349222 102349415 -140314938 - MIR SINE MIR 0 262 36 1011 84 0 0 chr1 102349427 102349558 -140314795 - AluSc SINE Alu -178 131 1 2045 131 0 3 chr1 102349705 102350011 -140314342 - AluSx SINE Alu 0 305 1 635 312 91 45 chr1 102350609 102350889 -140313464 + L2 LINE L2 2916 3219 -94 2304 105 0 0 chr1 102350889 102351184 -140313169 + AluSx SINE Alu 1 295 -17 635 312 91 45 chr1 102351184 102351278 -140313075 + L2 LINE L2 3219 3307 -6 225 0 0 0 chr1 102351358 102351383 -140312970 + (TTA)n Simple_repeat Simple_repeat 2 26 0 940 257 76 32 chr1 102351729 102352044 -140312309 + L2 LINE L2 2289 2617 -697 7747 148 33 24 chr1 102352044 102353485 -140310868 - L1MA5 LINE L1 -335 5965 4512 1785 170 0 7 chr1 102353485 102353767 -140310586 - AluJb SINE Alu -32 280 1 7747 148 33 24 chr1 102353767 102354365 -140309988 - L1MA5 LINE L1 -1788 4512 3921 427 242 24 16 chr1 102354513 102354637 -140309716 + MER103 DNA DNA 4 128 -38 882 201 0 7 chr1 102355164 102355318 -140309035 + FRAM SINE Alu 4 156 -20 2352 103 0 0 chr1 102355405 102355705 -140308648 - AluSx SINE Alu -12 300 1 694 68 11 0 chr1 102356610 102356698 -140307655 - AluSg SINE Alu -220 90 2 1927 116 0 14 chr1 102356706 102357015 -140307338 - AluSc SINE Alu 0 312 8 25 31 0 0 chr1 102357286 102357318 -140307035 + AT_rich Low_complexity Low_complexity 1 32 0 1059 161 38 5 chr1 102357425 102357611 -140306742 - MER20 DNA MER1_type -27 192 1 524 191 25 38 chr1 102358257 102358414 -140305939 - L1MC5 LINE L1 -282 7679 7525 1096 176 0 92 chr1 102358415 102358579 -140305774 - AluJb SINE Alu -15 297 119 2066 120 0 23 chr1 102358579 102358754 -140305599 - AluSx SINE Alu -6 306 128 315 0 0 0 chr1 102358754 102358789 -140305564 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2338 46 7 3 chr1 102358789 102359071 -140305282 - AluY SINE Alu -28 283 1 2066 120 0 23 chr1 102359071 102359193 -140305160 - AluSx SINE Alu -182 130 15 1096 176 0 92 chr1 102359193 102359267 -140305086 - AluJb SINE Alu -193 119 81 16317 42 2 6 chr1 102359367 102361416 -140302937 + L1P LINE L1 1168 3207 -2939 1061 155 6 17 chr1 102411610 102411784 -140252569 + FAM SINE Alu 1 172 -3 1648 210 52 8 chr1 102412021 102412402 -140251951 + MLT1H1 LTR MaLR 158 555 0 353 244 70 35 chr1 102412405 102412520 -140251833 + MIR3 SINE MIR 85 203 -5 1536 172 16 59 chr1 102412590 102412735 -140251618 + AluJo SINE Alu 1 151 -161 1929 159 7 0 chr1 102412735 102413036 -140251317 + AluJb SINE Alu 1 303 -9 1536 172 16 59 chr1 102413036 102413210 -140251143 + AluJo SINE Alu 151 306 -6 372 301 16 40 chr1 102414322 102414507 -140249846 + MIR SINE MIR 13 192 -70 354 98 0 0 chr1 102414509 102414560 -140249793 + (TA)n Simple_repeat Simple_repeat 1 51 0 186 289 0 22 chr1 102414595 102414640 -140249713 + L2 LINE L2 3133 3176 -96 1160 56 6 0 chr1 102414829 102414991 -140249362 + L1PA8 LINE L1 5898 6060 -112 3293 42 5 2 chr1 102414992 102415399 -140248954 + L1PA7 LINE L1 5740 6147 -7 5031 81 15 20 chr1 102415973 102416478 -140247875 - L1MA2 LINE L1 0 6304 5803 2216 105 20 3 chr1 102416478 102416774 -140247579 + AluSc SINE Alu 1 301 -8 5031 81 15 20 chr1 102416774 102417021 -140247332 - L1MA2 LINE L1 -501 5803 5556 315 314 19 0 chr1 102417304 102417409 -140246944 - MIR SINE MIR 0 262 156 291 272 160 16 chr1 102417525 102417650 -140246703 - MIR SINE MIR -115 147 5 4767 173 57 11 chr1 102418625 102419084 -140245269 + L1MC2 LINE L1 5010 5446 -898 216 0 0 0 chr1 102419084 102419108 -140245245 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4767 173 57 11 chr1 102419108 102419922 -140244431 + L1MC2 LINE L1 5446 6342 -2 640 309 88 56 chr1 102419924 102420092 -140244261 - L2 LINE L2 -21 3292 3131 2081 112 3 17 chr1 102420092 102420388 -140243965 + AluSg SINE Alu 1 292 -18 414 0 0 0 chr1 102420397 102420443 -140243910 + (CA)n Simple_repeat Simple_repeat 2 47 0 640 309 88 56 chr1 102420443 102420878 -140243475 - L2 LINE L2 -189 3124 2664 1056 188 19 0 chr1 102420881 102421088 -140243265 - MER20 DNA MER1_type -3 216 6 315 332 52 37 chr1 102421092 102421363 -140242990 - L2 LINE L2 -645 2669 2395 270 122 0 0 chr1 102421471 102421512 -140242841 + MER57A LTR ERV1 295 335 -68 320 97 16 0 chr1 102421517 102421579 -140242774 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 276 239 31 92 chr1 102421632 102421786 -140242567 + MLT1G1 LTR MaLR 21 169 -386 2105 129 45 47 chr1 102421789 102422141 -140242212 + MSTA LTR MaLR 3 355 -73 1768 53 0 0 chr1 102422141 102422366 -140241987 - L1PA4 LINE L1 -2 6153 5929 2105 129 45 47 chr1 102422366 102422438 -140241915 + MSTA LTR MaLR 355 426 -2 1078 227 83 75 chr1 102422463 102422847 -140241506 + MLT1G1 LTR MaLR 200 595 0 301 205 121 0 chr1 102422848 102422931 -140241422 + MIR SINE MIR 104 196 -66 574 256 77 29 chr1 102423083 102423290 -140241063 + L2 LINE L2 3097 3313 0 703 222 8 0 chr1 102423356 102423482 -140240871 - FLAM_A SINE Alu -6 127 1 566 217 117 8 chr1 102423941 102424061 -140240292 - FLAM_A SINE Alu 0 133 1 1645 164 93 8 chr1 102424555 102424951 -140239402 + L1M4 LINE L1 4974 5403 -743 987 193 84 5 chr1 102424954 102425167 -140239186 + LTR16A LTR ERVL 221 450 0 723 142 0 0 chr1 102425542 102425648 -140238705 + MER75 DNA T2_type 1 106 -408 2273 59 0 42 chr1 102425661 102425968 -140238385 - AluY SINE Alu 0 311 18 2670 95 4 78 chr1 102426102 102426169 -140238184 + MER75 DNA T2_type 93 163 -351 2053 125 0 10 chr1 102426169 102426464 -140237889 + AluSx SINE Alu 9 300 -12 2670 95 4 78 chr1 102426464 102426847 -140237506 + MER75 DNA T2_type 163 510 -4 1321 157 91 58 chr1 102427550 102427845 -140236508 - AluJo SINE Alu 0 304 1 506 241 21 48 chr1 102428231 102428376 -140235977 + MIR SINE MIR 117 257 -5 1838 80 0 8 chr1 102428590 102428827 -140235526 + AluY SINE Alu 70 304 -7 2073 145 0 0 chr1 102429077 102429374 -140234979 + AluSx SINE Alu 3 299 -13 834 191 0 0 chr1 102429578 102429709 -140234644 + AluSx SINE Alu 2 132 -181 249 93 0 47 chr1 102429711 102429754 -140234599 + MADE1 DNA Mariner 38 78 -2 1166 130 0 0 chr1 102429754 102429915 -140234438 + AluSx SINE Alu 123 283 -27 233 160 255 0 chr1 102431025 102431131 -140233222 - L1ME4a LINE L1 -3 6118 5986 1047 128 7 0 chr1 102431151 102431300 -140233053 - Tigger3(Golem) DNA MER2_type 0 3038 2889 28 29 0 0 chr1 102431581 102431616 -140232737 + AT_rich Low_complexity Low_complexity 1 35 0 1837 160 3 3 chr1 102431700 102431988 -140232365 + AluJo SINE Alu 7 294 -18 3705 138 17 66 chr1 102432178 102432861 -140231492 + MER51A LTR ERV1 1 640 0 2275 62 0 46 chr1 102433184 102433491 -140230862 + AluY SINE Alu 1 293 -18 2161 105 20 0 chr1 102433987 102434291 -140230062 + AluSp SINE Alu 2 311 -2 1383 244 90 28 chr1 102434291 102434657 -140229696 + L1MC4a LINE L1 5356 5759 -2049 1033 181 60 47 chr1 102434657 102434872 -140229481 - MER20 DNA MER1_type 0 219 2 1383 244 90 28 chr1 102434872 102434972 -140229381 + L1MC4a LINE L1 5759 5851 -1957 2160 102 7 13 chr1 102435086 102435390 -140228963 - AluSq SINE Alu -10 303 2 222 362 96 17 chr1 102435935 102436112 -140228241 - L2 LINE L2 -4 3268 3078 190 280 40 0 chr1 102436232 102436282 -140228071 + L2 LINE L2 3008 3059 -254 201 39 0 0 chr1 102436382 102436408 -140227945 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 522 279 61 0 chr1 102436427 102436592 -140227761 - MIR SINE MIR -80 182 8 1114 82 0 0 chr1 102436687 102436822 -140227531 + AluSq/x SINE Alu 1 135 -177 1563 113 129 16 chr1 102436822 102436958 -140227395 + AluSx SINE Alu 1 120 -192 2406 74 0 0 chr1 102436958 102437254 -140227099 + AluY SINE Alu 1 296 -15 1563 113 129 16 chr1 102437254 102437365 -140226988 + AluSx SINE Alu 120 276 -36 245 300 100 0 chr1 102438006 102438116 -140226237 - MIR SINE MIR -139 123 3 22 0 0 0 chr1 102438497 102438519 -140225834 + AT_rich Low_complexity Low_complexity 1 22 0 2015 116 14 14 chr1 102438648 102438941 -140225412 + AluSg SINE Alu 1 293 -17 411 21 0 0 chr1 102439003 102439051 -140225302 + (TG)n Simple_repeat Simple_repeat 1 48 0 2773 32 0 6 chr1 102439366 102439679 -140224674 - AluY SINE Alu 0 311 1 1611 132 78 68 chr1 102439683 102439979 -140224374 - AluSq SINE Alu -14 299 1 265 284 65 115 chr1 102440050 102440149 -140224204 + L2 LINE L2 2827 2929 -343 1463 171 94 7 chr1 102440149 102440436 -140223917 - AluJb SINE Alu 0 312 1 265 284 65 115 chr1 102440436 102440720 -140223633 + L2 LINE L2 2929 3191 -81 1894 151 0 16 chr1 102441479 102441783 -140222570 - AluJb SINE Alu -13 299 1 924 224 6 6 chr1 102441833 102442007 -140222346 + FAM SINE Alu 1 174 -1 966 161 0 6 chr1 102442091 102442259 -140222094 + L1MB8 LINE L1 5707 5873 -311 533 253 0 0 chr1 102442261 102442356 -140221997 + AluJ/FLAM SINE Alu 2 96 -216 393 175 0 0 chr1 102442359 102442422 -140221931 - AluSp SINE Alu -110 193 131 837 161 0 7 chr1 102442429 102442572 -140221781 + L1MB8 LINE L1 6031 6172 -6 4818 192 43 11 chr1 102442576 102443501 -140220852 - MER45B DNA AcHobo -85 955 1 2871 6 0 3 chr1 102444259 102444571 -140219782 + AluYa5 SINE Alu 1 311 0 2390 88 0 0 chr1 102445703 102445998 -140218355 + AluSc SINE Alu 1 295 -14 350 326 64 52 chr1 102446132 102446365 -140217988 + L3 LINE CR1 398 633 -944 1564 174 4 15 chr1 102446491 102446755 -140217598 - AluJo SINE Alu -51 261 1 2204 111 0 7 chr1 102446947 102447245 -140217108 - AluSq SINE Alu -17 296 1 787 277 16 27 chr1 102447245 102447501 -140216852 - MIR SINE MIR 0 262 10 267 155 28 14 chr1 102448194 102448265 -140216088 + (TA)n Simple_repeat Simple_repeat 1 72 0 825 288 35 31 chr1 102449198 102449763 -140214590 + ERVL LTR ERVL 3960 4530 -1124 709 47 0 0 chr1 102449802 102449888 -140214465 + HY3 scRNA scRNA 15 100 -1 1637 161 11 7 chr1 102449995 102450275 -140214078 + MLT1B LTR MaLR 1 281 -109 1514 58 5 0 chr1 102450439 102450628 -140213725 - AluY SINE Alu -2 309 120 2228 66 4 0 chr1 102450775 102451047 -140213306 - AluY SINE Alu -38 273 1 787 145 22 106 chr1 102451166 102451345 -140213008 - 7SK RNA RNA -29 164 1 916 76 8 0 chr1 102451345 102451463 -140212890 + MLT1B LTR MaLR 272 390 0 246 289 106 24 chr1 102451517 102451674 -140212679 - MIR SINE MIR -69 193 21 252 319 96 15 chr1 102451674 102451809 -140212544 + L2 LINE L2 2716 2861 -453 228 404 18 9 chr1 102451892 102452006 -140212347 + L2 LINE L2 2944 3058 -214 225 273 15 15 chr1 102452067 102452133 -140212220 + MIR SINE MIR 7 72 -190 218 235 113 70 chr1 102452136 102452251 -140212102 - L2 LINE L2 -5 3308 3189 411 221 96 32 chr1 102452325 102452483 -140211870 + MIR SINE MIR 94 259 -3 183 265 82 71 chr1 102452460 102452558 -140211795 + L2 LINE L2 3108 3206 -66 * 2264 102 0 7 chr1 102452719 102453022 -140211331 + AluSx SINE Alu 1 301 -11 1609 129 25 0 chr1 102453141 102453382 -140210971 + AluSx SINE Alu 60 306 -6 306 0 0 0 chr1 102453739 102453773 -140210580 + (CA)n Simple_repeat Simple_repeat 1 34 0 2208 125 3 3 chr1 102454326 102454638 -140209715 - AluJb SINE Alu 0 312 1 431 236 128 6 chr1 102454958 102455118 -140209235 - MIR3 SINE MIR -16 192 13 22 35 0 0 chr1 102455493 102455522 -140208831 + AT_rich Low_complexity Low_complexity 1 29 0 831 265 100 4 chr1 102455955 102456194 -140208159 + MIR SINE MIR 6 257 -5 187 206 0 0 chr1 102456270 102456304 -140208049 + MIR SINE MIR 90 123 -139 1342 157 0 42 chr1 102456325 102456586 -140207767 + AluJb SINE Alu 1 250 -62 4709 170 22 19 chr1 102456702 102457361 -140206992 - L1MC3 LINE L1 -536 7249 6585 1553 182 10 17 chr1 102457361 102457652 -140206701 + AluJo SINE Alu 1 289 -23 4709 170 22 19 chr1 102457652 102457898 -140206455 - L1MC3 LINE L1 -1200 6585 6341 6018 109 23 12 chr1 102457918 102458378 -140205975 - L1PB3 LINE L1 -2 6152 5699 183 42 0 0 chr1 102458378 102458402 -140205951 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2048 126 0 14 chr1 102458402 102458687 -140205666 - AluSx SINE Alu -31 281 1 6018 109 23 12 chr1 102458687 102459250 -140205103 - L1PB3 LINE L1 -454 5700 5116 2356 169 24 98 chr1 102459272 102459827 -140204526 - L1MC3 LINE L1 -1447 6338 5836 2322 84 7 7 chr1 102459827 102460124 -140204229 - AluSx SINE Alu -15 297 1 2356 169 24 98 chr1 102460124 102460209 -140204144 - L1MC3 LINE L1 -1949 5836 5746 187 197 164 49 chr1 102460647 102460708 -140203645 - MIR SINE MIR -20 242 175 1050 226 189 60 chr1 102461978 102462077 -140202276 + MLT1J LTR MaLR 1 86 -425 2223 128 0 0 chr1 102462077 102462381 -140201972 + AluSq SINE Alu 1 304 -9 1050 226 189 60 chr1 102462381 102462732 -140201621 + MLT1J LTR MaLR 86 509 -2 1311 172 9 18 chr1 102463093 102463314 -140201039 + MER20 DNA MER1_type 1 219 0 241 358 0 0 chr1 102464391 102464472 -140199881 - L2 LINE L2 -5 3308 3228 249 287 69 26 chr1 102464798 102464914 -140199439 - L1MC3 LINE L1 -359 5762 5643 1906 143 23 10 chr1 102465122 102465422 -140198931 + AluJo SINE Alu 3 306 -6 2313 167 58 15 chr1 102465914 102466060 -140198293 - L1MB7 LINE L1 -14 6170 6032 2148 120 3 0 chr1 102466060 102466360 -140197993 + AluSx SINE Alu 1 301 -11 2313 167 58 15 chr1 102466360 102466675 -140197678 - L1MB7 LINE L1 -152 6032 5689 2226 60 18 14 chr1 102466702 102467014 -140197339 - AluY SINE Alu 0 313 1 694 134 0 45 chr1 102467036 102467118 -140197235 - U6 snRNA snRNA 0 107 30 10025 82 19 10 chr1 102467118 102468392 -140195961 + HSMAR1 DNA Mariner 1 1285 -2 694 134 0 45 chr1 102468392 102468421 -140195932 - U6 snRNA snRNA -77 30 1 478 189 0 21 chr1 102468421 102468516 -140195837 - L1MB7 LINE L1 -490 5694 5602 493 174 35 52 chr1 102468535 102468650 -140195703 - L1MC1 LINE L1 -9 6324 6212 406 259 94 125 chr1 102468827 102469402 -140194951 - MLT1K LTR MaLR -30 558 2 2206 115 7 0 chr1 102469487 102469782 -140194571 - AluSx SINE Alu -15 297 1 2429 88 0 0 chr1 102470208 102470516 -140193837 - AluSg SINE Alu -2 308 1 2095 131 7 0 chr1 102470931 102471229 -140193124 + AluSx SINE Alu 1 300 -12 1148 143 0 0 chr1 102471233 102471394 -140192959 + AluJb SINE Alu 138 298 -14 219 175 0 0 chr1 102471518 102471575 -140192778 + GA-rich Low_complexity Low_complexity 2 58 0 382 196 18 45 chr1 102471647 102471759 -140192594 + L1ME4a LINE L1 5966 6074 -47 205 149 43 0 chr1 102471764 102471811 -140192542 + A-rich Low_complexity Low_complexity 4 52 0 353 208 66 85 chr1 102472316 102472422 -140191931 + L2 LINE L2 3210 3313 0 557 183 0 42 chr1 102472652 102472772 -140191581 + L1MA9 LINE L1 5916 6030 -282 487 258 55 12 chr1 102472768 102472931 -140191422 + L1MA10 LINE L1 6165 6334 0 * 263 242 144 77 chr1 102473128 102473322 -140191031 - L2 LINE L2 -406 2908 2702 21 0 0 0 chr1 102473322 102473343 -140191010 + AT_rich Low_complexity Low_complexity 1 21 0 2141 116 0 3 chr1 102473344 102473636 -140190717 + AluSc SINE Alu 1 291 -18 253 0 0 0 chr1 102473649 102473677 -140190676 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 404 127 0 0 chr1 102473677 102473733 -140190620 - AluJ/FRAM SINE Alu -1 310 228 824 81 0 9 chr1 102473835 102473946 -140190407 + AluSg/x SINE Alu 185 294 -18 217 0 0 0 chr1 102473959 102473983 -140190370 + (TTTA)n Simple_repeat Simple_repeat 3 180 0 1963 126 0 18 chr1 102473983 102474270 -140190083 - AluJo SINE Alu -1 306 2 412 281 124 67 chr1 102474272 102474539 -140189814 - L2 LINE L2 -602 2712 2431 * 551 286 79 22 chr1 102474507 102474836 -140189517 - L2 LINE L2 -213 3059 2713 703 258 220 43 chr1 102475245 102475664 -140188689 - LTR33 LTR ERVL -16 505 13 849 143 0 41 chr1 102475751 102475898 -140188455 - FLAM_C SINE Alu -2 141 1 602 155 17 17 chr1 102476024 102476140 -140188213 - L1MA7 LINE L1 -12 6279 6164 1676 172 4 7 chr1 102478018 102478297 -140186056 + AluJo SINE Alu 14 291 -21 580 278 116 20 chr1 102480073 102480271 -140184082 + MIR SINE MIR 12 228 -34 2275 95 3 0 chr1 102480873 102481177 -140183176 + AluSx SINE Alu 1 305 -7 634 133 0 0 chr1 102483076 102483159 -140181194 - AluS SINE Alu -229 84 2 1538 296 74 21 chr1 102483169 102484238 -140180115 - ERVL LTR ERVL -1216 4548 3380 2754 311 49 35 chr1 102484247 102485626 -140178727 + HERVL LTR ERVL 2778 4174 -1480 978 298 71 34 chr1 102485633 102486048 -140178305 + HERVL LTR ERVL 3898 4633 -710 962 169 257 56 chr1 102486137 102486386 -140177967 - AluJo SINE Alu -2 300 2 786 229 14 0 chr1 102487040 102487184 -140177169 + FRAM SINE Alu 1 146 -30 951 119 24 0 chr1 102487394 102487520 -140176833 + FLAM_A SINE Alu 5 133 0 7907 216 48 35 chr1 102487523 102488695 -140175658 + L1ME1 LINE L1 3071 4225 -1941 1828 172 0 35 chr1 102488695 102489014 -140175339 + AluJo SINE Alu 1 308 -4 7907 216 48 35 chr1 102489014 102489616 -140174737 + L1ME1 LINE L1 4225 4817 -1349 1839 187 19 32 chr1 102489616 102489995 -140174358 + MLT1A2 LTR MaLR 1 374 0 7907 216 48 35 chr1 102489995 102490301 -140174052 + L1ME1 LINE L1 4817 5117 -1049 1827 176 0 0 chr1 102490301 102490596 -140173757 + AluJo SINE Alu 3 297 -15 2102 89 4 4 chr1 102490598 102490902 -140173451 + AluSg SINE Alu 1 304 0 7907 216 48 35 chr1 102490902 102491871 -140172482 + L1ME1 LINE L1 5117 6162 -4 516 195 85 25 chr1 102492043 102492161 -140172192 - MLT1J LTR MaLR 0 511 387 2258 122 0 0 chr1 102492203 102492506 -140171847 - AluSx SINE Alu -9 303 1 3665 76 14 12 chr1 102492507 102492852 -140171501 - Tigger1 DNA MER2_type -332 2086 1738 2355 97 3 0 chr1 102492852 102493151 -140171202 - AluSp SINE Alu -13 300 1 3665 76 14 12 chr1 102493151 102493304 -140171049 - Tigger1 DNA MER2_type -680 1738 1587 861 168 60 7 chr1 102493307 102493456 -140170897 - FAM SINE Alu -20 165 9 9479 117 35 57 chr1 102493460 102493626 -140170727 - Tigger1 DNA MER2_type -824 1594 1426 1836 147 42 0 chr1 102493626 102493912 -140170441 - AluJb SINE Alu -14 298 1 9479 117 35 57 chr1 102493912 102494384 -140169969 - Tigger1 DNA MER2_type -992 1426 945 1892 182 0 3 chr1 102494384 102494697 -140169656 + AluJb SINE Alu 1 312 0 9479 117 35 57 chr1 102494697 102494753 -140169600 - Tigger1 DNA MER2_type -1473 945 889 1913 148 0 0 chr1 102494753 102495060 -140169293 + AluSq SINE Alu 1 307 0 9479 117 35 57 chr1 102495060 102495969 -140168384 - Tigger1 DNA MER2_type -1529 889 23 1810 178 7 3 chr1 102496187 102496496 -140167857 + AluJb SINE Alu 1 310 -2 433 336 82 29 chr1 102496496 102496574 -140167779 + L1MC/D LINE L1 5505 5577 -2231 1154 169 46 59 chr1 102496574 102496811 -140167542 + MER46A DNA MER2_type 2 235 -1 433 336 82 29 chr1 102496811 102497005 -140167348 + L1MC/D LINE L1 5577 5795 -2013 21 0 0 0 chr1 102497008 102497029 -140167324 + AT_rich Low_complexity Low_complexity 1 21 0 1540 137 51 0 chr1 102497098 102497332 -140167021 + AluSx SINE Alu 55 300 -12 198 71 0 0 chr1 102497586 102497614 -140166739 + (CA)n Simple_repeat Simple_repeat 2 29 0 2639 48 0 6 chr1 102498057 102498370 -140165983 + AluY SINE Alu 1 311 0 1184 128 0 0 chr1 102499219 102499375 -140164978 + AluSx SINE Alu 1 156 -156 1321 98 167 0 chr1 102499383 102499587 -140164766 + AluSg/x SINE Alu 72 309 -1 812 192 0 8 chr1 102499656 102499786 -140164567 + FLAM_A SINE Alu 1 129 -4 1265 246 126 35 chr1 102499791 102500275 -140164078 + MER34 LTR ERV1 15 542 0 628 333 58 62 chr1 102500402 102500868 -140163485 - L2 LINE L2 0 3272 2809 2251 55 0 92 chr1 102501015 102501342 -140163011 + AluY SINE Alu 1 297 -14 1436 159 7 30 chr1 102501457 102501727 -140162626 + 7SLRNA srpRNA srpRNA 4 267 -53 837 193 6 30 chr1 102501842 102502008 -140162345 + FRAM SINE Alu 1 156 -20 2216 92 0 7 chr1 102502010 102502367 -140161986 + AluSg SINE Alu 1 355 0 550 282 44 28 chr1 102502492 102502673 -140161680 - MIR SINE MIR -50 212 29 2739 140 35 17 chr1 102503304 102503783 -140160570 + L1MC1 LINE L1 5742 6229 -104 2495 84 0 0 chr1 102503784 102504451 -140159902 + AluY SINE Alu 1 784 0 653 154 0 43 chr1 102504451 102504568 -140159785 + L1MC1 LINE L1 6222 6333 0 2407 48 45 0 chr1 102506237 102506526 -140157827 - AluY SINE Alu -9 302 1 1616 127 44 73 chr1 102506527 102506843 -140157510 - AluSx SINE Alu -5 307 1 216 0 0 0 chr1 102509004 102509028 -140155325 + (T)n Simple_repeat Simple_repeat 1 24 0 368 204 143 10 chr1 102509279 102509377 -140154976 - FLAM_A SINE Alu -1 132 22 286 295 119 36 chr1 102509492 102509685 -140154668 - L2 LINE L2 -7 3306 3098 * 3891 223 98 87 chr1 102509672 102510325 -140154028 - L2 LINE L2 -907 2407 1763 679 138 0 28 chr1 102510325 102510434 -140153919 + FRAM SINE Alu 67 172 -4 3891 223 98 87 chr1 102510434 102511186 -140153167 - L2 LINE L2 -1551 1763 877 1507 180 3 118 chr1 102511200 102511523 -140152830 + AluJb SINE Alu 1 286 -16 1885 173 87 13 chr1 102511540 102511921 -140152432 + LTR52 LTR ERVL 11 419 -2 1669 261 144 24 chr1 102511933 102512606 -140151747 - L2 LINE L2 -2449 865 112 1005 211 52 64 chr1 102513214 102513387 -140150966 - Charlie2 DNA MER1_type 0 2862 2693 2443 65 0 16 chr1 102513387 102513695 -140150658 + AluSg1 SINE Alu 1 303 -6 1005 211 52 64 chr1 102513695 102513867 -140150486 - Charlie2 DNA MER1_type -169 2693 2521 793 216 40 45 chr1 102513878 102514054 -140150299 - FRAM SINE Alu 0 40 1 206 118 0 0 chr1 102514120 102514154 -140150199 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 32 67 0 0 chr1 102514366 102514426 -140149927 + AT_rich Low_complexity Low_complexity 1 60 0 513 301 54 29 chr1 102514726 102514965 -140149388 + MER102b DNA MER1_type 97 341 0 748 142 0 0 chr1 102516167 102516273 -140148080 - U6 snRNA snRNA 0 107 2 510 244 203 30 chr1 102516720 102516917 -140147436 + MIR SINE MIR 11 241 -21 194 0 39 0 chr1 102516981 102517007 -140147346 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 496 119 15 0 chr1 102517107 102517174 -140147179 - AluS SINE Alu -242 69 2 1256 123 0 0 chr1 102518302 102518472 -140145881 + AluSg/x SINE Alu 131 300 -12 954 274 38 19 chr1 102518930 102519367 -140144986 + LTR33A LTR ERVL 2 523 0 258 95 0 0 chr1 102519386 102519428 -140144925 + (TA)n Simple_repeat Simple_repeat 2 43 0 1929 132 0 14 chr1 102519428 102519717 -140144636 - AluJb SINE Alu -16 296 12 190 316 76 25 chr1 102519833 102519912 -140144441 - L2 LINE L2 -2 3270 3188 1933 106 68 31 chr1 102519934 102520227 -140144126 + AluSx SINE Alu 3 306 -6 2035 145 0 0 chr1 102520568 102520858 -140143495 + AluSx SINE Alu 1 290 -22 2196 121 0 0 chr1 102521606 102521904 -140142449 - AluSx SINE Alu -14 298 1 444 338 10 5 chr1 102522582 102522786 -140141567 + L1MC4a LINE L1 7082 7286 -522 367 215 75 0 chr1 102522851 102522934 -140141419 - MER5A DNA MER1_type -95 94 4 350 316 34 15 chr1 102522936 102523142 -140141211 + L1MC4 LINE L1 7689 7898 -144 225 0 0 0 chr1 102523505 102523530 -140140823 + (TG)n Simple_repeat Simple_repeat 2 26 0 565 335 43 10 chr1 102524667 102524876 -140139477 - MIR SINE MIR -44 218 3 973 188 43 11 chr1 102525288 102525474 -140138879 + AluJo SINE Alu 120 311 -1 30 45 0 0 chr1 102525845 102525889 -140138464 + AT_rich Low_complexity Low_complexity 1 44 0 5749 87 12 2 chr1 102525981 102526812 -140137541 + L1PA11 LINE L1 5334 6172 -2 1728 213 126 46 chr1 102526841 102527666 -140136687 - L1MDa LINE L1 -4292 2248 1358 5395 137 35 27 chr1 102527685 102528621 -140135732 + Tigger7 DNA MER2_type 15 961 -1526 2140 108 0 14 chr1 102528621 102528916 -140135437 + AluSg SINE Alu 1 291 -19 5395 137 35 27 chr1 102528916 102528950 -140135403 + Tigger7 DNA MER2_type 961 993 -1494 1140 125 62 0 chr1 102528972 102529180 -140135173 + Tigger7 DNA MER2_type 2271 2491 0 21 0 0 0 chr1 102529401 102529422 -140134931 + AT_rich Low_complexity Low_complexity 1 21 0 285 346 0 0 chr1 102529845 102529926 -140134427 - MER102b DNA MER1_type -260 81 1 428 242 50 0 chr1 102530200 102530299 -140134054 - FLAM_A SINE Alu -26 116 13 2223 113 0 0 chr1 102530299 102530590 -140133763 + AluSp SINE Alu 1 291 -22 25 31 0 0 chr1 102530607 102530639 -140133714 + AT_rich Low_complexity Low_complexity 1 32 0 4398 61 9 0 chr1 102530821 102531375 -140132978 - L1PA7 LINE L1 0 6154 5596 342 209 54 62 chr1 102531468 102531597 -140132756 - L1MC5 LINE L1 -29 7932 7805 330 252 39 10 chr1 102531604 102531707 -140132646 + MER94 DNA DNA 6 111 -23 1773 140 79 34 chr1 102532156 102532512 -140131841 - THE1C LTR MaLR -3 372 1 9614 129 22 35 chr1 102532512 102534111 -140130242 - THE1C-int LTR MaLR 0 1580 3 351 115 0 0 chr1 102534142 102534194 -140130159 + MSTA LTR MaLR 341 392 -36 461 105 23 23 chr1 102534194 102534280 -140130073 - THE1-int LTR MaLR -451 1129 1044 1378 167 75 41 chr1 102534287 102534605 -140129748 - THE1C LTR MaLR -46 329 1 750 166 36 26 chr1 102534605 102534798 -140129555 - L1MC5 LINE L1 -240 7721 7527 508 110 0 0 chr1 102535526 102535599 -140128754 + AluS SINE Alu 1 73 -239 22215 50 7 2 chr1 102535963 102539659 -140124694 + L1PA5 LINE L1 2352 6065 -89 586 226 2 22 chr1 102539759 102539938 -140124415 + L1 LINE L1 2899 3075 -3071 330 214 0 0 chr1 102539997 102540081 -140124272 - L1 LINE L1 -3354 2792 2709 267 108 0 0 chr1 102540132 102540169 -140124184 + FLAM SINE Alu 87 123 -10 6458 152 16 29 chr1 102540223 102540733 -140123620 + L1 LINE L1 3100 3615 -2531 1907 168 10 0 chr1 102540733 102541031 -140123322 - AluJb SINE Alu -11 301 1 6458 152 16 29 chr1 102541031 102541411 -140122942 + L1 LINE L1 3615 3998 -2148 2394 88 0 3 chr1 102541411 102541717 -140122636 + AluSg1 SINE Alu 1 305 -4 6458 152 16 29 chr1 102541717 102542013 -140122340 + L1 LINE L1 3998 4270 -1876 1841 185 0 3 chr1 102542013 102542321 -140122032 + AluJb SINE Alu 6 312 0 6458 152 16 29 chr1 102542321 102542497 -140121856 + L1 LINE L1 4270 4447 -1699 935 150 6 24 chr1 102542501 102542668 -140121685 + FRAM SINE Alu 4 167 -9 39 22 0 0 chr1 102542722 102542768 -140121585 + AT_rich Low_complexity Low_complexity 1 46 0 573 298 203 35 chr1 102544547 102544916 -140119437 - L2 LINE L2 0 3313 2883 1794 156 51 31 chr1 102544973 102545363 -140118990 - L1MB5 LINE L1 0 6174 5777 2132 131 83 0 chr1 102545363 102545699 -140118654 + THE1B LTR MaLR 1 364 0 10182 96 52 3 chr1 102545699 102547205 -140117148 + THE1B-int LTR MaLR 1 1580 0 2224 119 73 14 chr1 102547205 102547549 -140116804 + THE1B LTR MaLR 1 364 0 1499 181 54 23 chr1 102547549 102547903 -140116450 - L1MB5 LINE L1 -393 5781 5417 1269 278 99 58 chr1 102547906 102547979 -140116374 - L2 LINE L2 -528 2786 2717 2189 134 0 7 chr1 102547979 102548285 -140116068 - AluSg SINE Alu -6 304 1 1269 278 99 58 chr1 102548285 102548472 -140115881 - L2 LINE L2 -597 2717 2539 1961 122 43 0 chr1 102548472 102548751 -140115602 + AluSq SINE Alu 1 291 -22 1269 278 99 58 chr1 102548751 102549126 -140115227 - L2 LINE L2 -775 2539 2124 568 275 69 23 chr1 102549314 102549532 -140114821 + MIR SINE MIR 19 246 -16 357 288 129 43 chr1 102550864 102551003 -140113350 - MIR3 SINE MIR -28 180 30 1423 253 250 25 chr1 102551860 102552465 -140111888 - L2 LINE L2 -2518 796 56 535 166 7 138 chr1 102552793 102552938 -140111415 + MER5B DNA MER1_type 52 177 -1 273 363 44 9 chr1 102553029 102553142 -140111211 - L2 LINE L2 -2 3270 3154 901 282 93 30 chr1 102553877 102554544 -140109809 + L2 LINE L2 1459 2260 -1054 1361 182 18 39 chr1 102554613 102554763 -140109590 + AluJb SINE Alu 2 154 -160 423 0 0 0 chr1 102554763 102554810 -140109543 + (CA)n Simple_repeat Simple_repeat 1 47 0 1361 182 18 39 chr1 102554810 102554978 -140109375 + AluJb SINE Alu 154 314 0 2427 89 0 0 chr1 102555297 102555601 -140108752 + AluSc SINE Alu 1 304 -5 279 279 43 64 chr1 102555742 102555860 -140108493 + HAL1 LINE L1 1805 1917 -590 2154 93 14 0 chr1 102555860 102556149 -140108204 + AluSp SINE Alu 1 293 -20 279 279 43 64 chr1 102556149 102556263 -140108090 + HAL1 LINE L1 1917 2032 -475 2068 136 0 0 chr1 102556772 102557066 -140107287 - AluSx SINE Alu -18 294 1 472 268 79 43 chr1 102557606 102557860 -140106493 + MER68 LTR ERV1 180 442 -120 200 188 0 0 chr1 102557904 102557936 -140106417 + (TTG)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr1 102558198 102558225 -140106128 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chr1 102558325 102558382 -140105971 + AT_rich Low_complexity Low_complexity 1 57 0 219 355 110 0 chr1 102559110 102559265 -140105088 + L2 LINE L2 2567 2738 -576 537 221 123 62 chr1 102559477 102559576 -140104777 + MIR SINE MIR 2 93 -169 1856 146 7 17 chr1 102559576 102559877 -140104476 - AluJb SINE Alu -14 298 1 537 221 123 62 chr1 102559877 102559972 -140104381 + MIR SINE MIR 93 208 -54 662 227 23 32 chr1 102560185 102560204 -140104149 - LTR54 LTR ERV1 0 510 492 1860 168 0 16 chr1 102560204 102560514 -140103839 + AluJb SINE Alu 1 305 -7 662 227 23 32 chr1 102560514 102560714 -140103639 - LTR54 LTR ERV1 -18 492 293 269 151 0 19 chr1 102560759 102560812 -140103541 - LTR54 LTR ERV1 -384 126 75 195 219 0 0 chr1 102561058 102561099 -140103254 + L2 LINE L2 3273 3313 0 798 247 0 0 chr1 102561944 102562106 -140102247 + FRAM SINE Alu 1 162 -4 1819 176 0 13 chr1 102562253 102562560 -140101793 + AluJb SINE Alu 1 303 -9 535 245 14 85 chr1 102562638 102562850 -140101503 + LTR33 LTR ERVL 1 197 -324 358 229 0 0 chr1 102562883 102562953 -140101400 - MER81 DNA DNA 0 114 45 577 248 0 8 chr1 102563227 102563360 -140100993 - MIR SINE MIR -8 254 123 215 292 326 11 chr1 102563434 102563610 -140100743 + L2 LINE L2 3032 3263 -50 893 152 0 152 chr1 102563610 102563705 -140100648 - MER5A DNA MER1_type -2 187 79 2135 151 0 0 chr1 102563705 102564017 -140100336 - AluSx SINE Alu 0 312 1 893 152 0 152 chr1 102564017 102564064 -140100289 - MER5A DNA MER1_type -110 79 85 2248 125 0 0 chr1 102564064 102564369 -140099984 - AluSx SINE Alu -7 305 1 893 152 0 152 chr1 102564369 102564442 -140099911 - MER5A DNA MER1_type -103 86 4 2337 82 3 20 chr1 102564823 102565126 -140099227 + AluY SINE Alu 1 298 -13 11625 106 10 24 chr1 102565181 102566752 -140097601 + Tigger1 DNA MER2_type 24 1566 -852 2463 81 3 0 chr1 102566752 102567059 -140097294 + AluY SINE Alu 1 308 -3 11625 106 10 24 chr1 102567059 102567328 -140097025 + Tigger1 DNA MER2_type 1566 1837 -581 1089 148 9 43 chr1 102567343 102567525 -140096828 - L1MB5 LINE L1 0 6174 5998 1963 141 154 19 chr1 102567525 102567901 -140096452 + MSTA LTR MaLR 2 428 0 1089 148 9 43 chr1 102567901 102567928 -140096425 - L1MB5 LINE L1 -176 5998 5972 3149 86 51 96 chr1 102567934 102568001 -140096352 + Tigger1 DNA MER2_type 1821 1889 -529 2275 113 0 0 chr1 102568001 102568302 -140096051 + AluSx SINE Alu 1 301 -11 3149 86 51 96 chr1 102568302 102568407 -140095946 + Tigger1 DNA MER2_type 1889 1997 -421 2259 112 0 3 chr1 102568407 102568710 -140095643 + AluSq SINE Alu 1 302 -11 1513 178 0 41 chr1 102568718 102568988 -140095365 - AluJb SINE Alu -53 259 1 3149 86 51 96 chr1 102568988 102569431 -140094922 + Tigger1 DNA MER2_type 2004 2418 0 372 183 37 0 chr1 102569448 102569530 -140094823 - MLT1I LTR MaLR 0 409 325 1893 155 0 24 chr1 102569561 102569858 -140094495 - AluJb SINE Alu -22 290 1 2649 192 95 60 chr1 102569859 102570107 -140094246 + L1ME1 LINE L1 4941 5179 -987 1562 186 0 31 chr1 102570107 102570398 -140093955 + AluJo SINE Alu 11 292 -20 2649 192 95 60 chr1 102570398 102570691 -140093662 + L1ME1 LINE L1 5179 5460 -706 2359 92 0 0 chr1 102570700 102570993 -140093360 + AluSg SINE Alu 1 293 -17 879 129 0 50 chr1 102570993 102571122 -140093231 - FLAM_C SINE Alu -177 125 2 2649 192 95 60 chr1 102571122 102571697 -140092656 + L1ME1 LINE L1 5460 6085 -81 401 224 152 73 chr1 102571798 102571888 -140092465 - MLT1I LTR MaLR -231 178 97 2199 110 7 0 chr1 102571888 102572188 -140092165 - AluSx SINE Alu -10 302 1 401 224 152 73 chr1 102572188 102572262 -140092091 - MLT1I LTR MaLR -312 97 1 225 0 0 0 chr1 102572344 102572369 -140091984 + (T)n Simple_repeat Simple_repeat 1 25 0 1039 168 64 39 chr1 102572372 102572575 -140091778 - AluJo SINE Alu -89 223 16 244 250 0 0 chr1 102572823 102572879 -140091474 + L3 LINE CR1 1443 1498 -79 26 0 0 0 chr1 102572987 102573013 -140091340 + AT_rich Low_complexity Low_complexity 1 26 0 2485 76 0 3 chr1 102573049 102573351 -140091002 - AluSp SINE Alu -12 301 1 225 314 88 22 chr1 102575459 102575596 -140088757 - MIR SINE MIR -67 195 50 960 185 40 0 chr1 102576920 102577120 -140087233 + MER3 DNA MER1_type 2 209 0 1684 160 26 45 chr1 102577522 102577834 -140086519 - AluJo SINE Alu -6 306 1 294 172 0 31 chr1 102577865 102577929 -140086424 - L1ME2 LINE L1 -10 6154 6093 * 4418 196 67 39 chr1 102577923 102578252 -140086101 - L1MB7 LINE L1 -13 6171 5853 1317 190 216 3 chr1 102578252 102578604 -140085749 - MSTA LTR MaLR 0 428 2 4418 196 67 39 chr1 102578604 102579976 -140084377 - L1MB7 LINE L1 -331 5853 4413 740 93 7 147 chr1 102579985 102580135 -140084218 + FRAM SINE Alu 24 152 -24 2126 97 43 7 chr1 102580429 102580729 -140083624 - AluY SINE Alu 0 311 1 1863 142 13 19 chr1 102580729 102581038 -140083315 - AluJo SINE Alu -5 307 1 510 275 0 8 chr1 102581038 102581158 -140083195 - MER8 DNA MER2_type -119 120 2 1399 174 63 15 chr1 102581160 102581430 -140082923 - Tigger3(Golem) DNA MER2_type -2745 284 2 2142 108 30 7 chr1 102581473 102581770 -140082583 + AluSx SINE Alu 1 304 -8 1432 164 122 24 chr1 102582109 102582438 -140081915 - MER46B DNA MER2_type 0 236 1 2278 104 0 0 chr1 102582543 102582840 -140081513 + AluSx SINE Alu 1 297 -15 1910 145 0 20 chr1 102583829 102584126 -140080227 - AluSx SINE Alu -21 291 1 644 170 5 160 chr1 102584838 102585044 -140079309 - AluJo SINE Alu -61 251 78 1036 147 115 5 chr1 102585044 102585098 -140079255 - AluSq SINE Alu -101 212 165 1734 113 117 15 chr1 102585098 102585235 -140079118 - AluSx SINE Alu -10 302 180 2426 71 0 0 chr1 102585235 102585531 -140078822 - AluY SINE Alu -15 296 1 1734 113 117 15 chr1 102585531 102585667 -140078686 - AluSx SINE Alu -132 180 1 1036 147 115 5 chr1 102585667 102585803 -140078550 - AluSq SINE Alu -148 165 1 2403 84 0 0 chr1 102585920 102586218 -140078135 - AluY SINE Alu -13 298 1 221 363 94 6 chr1 102586411 102586571 -140077782 + L2 LINE L2 1901 2074 -1240 625 211 0 9 chr1 102586637 102586751 -140077602 - FLAM_C SINE Alu -30 113 1 262 206 56 28 chr1 102587380 102587487 -140076866 - HAL1 LINE L1 -1450 1057 948 238 219 152 73 chr1 102587672 102587850 -140076503 - HAL1 LINE L1 -31 2476 2285 2263 108 0 0 chr1 102588156 102588451 -140075902 + AluY SINE Alu 1 295 -16 1354 214 147 82 chr1 102588643 102588968 -140075385 - HAL1 LINE L1 -574 1933 1631 958 163 19 6 chr1 102588968 102589128 -140075225 - FAM SINE Alu -13 162 1 1354 214 147 82 chr1 102589128 102589525 -140074828 - HAL1 LINE L1 -876 1631 1164 1058 183 89 60 chr1 102589725 102590140 -140074213 - L1MC5 LINE L1 -433 7528 7102 1080 154 32 118 chr1 102590277 102590557 -140073796 - AluJo SINE Alu -22 290 35 2181 110 3 13 chr1 102590589 102590899 -140073454 - AluSq SINE Alu -6 307 1 2298 121 0 0 chr1 102590900 102591207 -140073146 - AluSg SINE Alu -1 309 3 334 277 75 85 chr1 102591213 102591401 -140072952 - HAL1 LINE L1 -2167 340 155 207 293 150 36 chr1 102591554 102591694 -140072659 + L2 LINE L2 2151 2306 -1008 842 238 93 42 chr1 102591714 102592055 -140072298 - L1M4 LINE L1 -2911 3235 2858 2021 154 3 0 chr1 102592055 102592366 -140071987 - AluJb SINE Alu 0 312 1 842 238 93 42 chr1 102592366 102592528 -140071825 - L1M4 LINE L1 -3288 2858 2706 325 351 9 0 chr1 102592605 102592719 -140071634 + L2 LINE L2 2422 2536 -778 2103 133 0 0 chr1 102592852 102593152 -140071201 - AluSx SINE Alu -10 302 3 231 260 170 40 chr1 102593221 102593321 -140071032 - L2 LINE L2 -1 3312 3200 * 416 359 77 48 chr1 102593320 102593760 -140070593 + L2 LINE L2 2814 3266 -6 429 326 6 11 chr1 102594399 102594580 -140069773 + HAL1 LINE L1 734 913 -1594 720 273 256 30 chr1 102594580 102595041 -140069312 + HAL1 LINE L1 1336 1900 -607 364 300 120 26 chr1 102595120 102595470 -140068883 + HAL1 LINE L1 2047 2429 -78 2240 77 0 11 chr1 102595548 102595863 -140068490 - AluY SINE Alu 0 312 1 843 168 158 42 chr1 102596623 102596813 -140067540 - AluJo SINE Alu -19 293 82 1745 177 16 10 chr1 102596819 102597129 -140067224 - AluJo SINE Alu 0 312 1 564 197 92 14 chr1 102597129 102597271 -140067082 - L1MB2 LINE L1 -41 6130 5978 1664 137 63 39 chr1 102597568 102597853 -140066500 + AluJb SINE Alu 1 292 -20 330 281 46 46 chr1 102598013 102598101 -140066252 + L1MC5 LINE L1 7751 7841 -120 2151 101 10 10 chr1 102598101 102598397 -140065956 + AluSg SINE Alu 1 296 -14 330 281 46 46 chr1 102598397 102598461 -140065892 + L1MC5 LINE L1 7840 7903 -58 25 51 0 0 chr1 102598490 102598529 -140065824 + AT_rich Low_complexity Low_complexity 1 39 0 26 88 0 0 chr1 102598732 102598800 -140065553 + AT_rich Low_complexity Low_complexity 1 68 0 1744 160 0 4 chr1 102599226 102599489 -140064864 - AluJb SINE Alu -48 264 3 2351 95 0 0 chr1 102599652 102599946 -140064407 + AluSc SINE Alu 3 296 -13 210 274 16 32 chr1 102600058 102600120 -140064233 - L2 LINE L2 -30 3242 3182 2461 31 42 0 chr1 102600125 102600414 -140063939 + AluY SINE Alu 1 301 -10 285 271 49 12 chr1 102600786 102600905 -140063448 + L2 LINE L2 3182 3268 -4 2145 99 0 7 chr1 102600934 102601226 -140063127 - AluSg SINE Alu -20 290 1 212 222 0 48 chr1 102601477 102601540 -140062813 - L2 LINE L2 -50 3222 3163 2168 107 3 7 chr1 102601772 102602070 -140062283 - AluSp SINE Alu -16 297 1 494 180 120 10 chr1 102602322 102602422 -140061931 + Charlie1 DNA MER1_type 1450 1560 -1201 2099 123 3 7 chr1 102602468 102602769 -140061584 - AluSx SINE Alu -6 306 7 564 85 12 0 chr1 102602810 102602892 -140061461 + Charlie1 DNA MER1_type 1727 1809 -952 1535 157 49 26 chr1 102603019 102603324 -140061029 - AluJo SINE Alu 0 312 1 219 69 0 0 chr1 102603517 102603546 -140060807 + (TG)n Simple_repeat Simple_repeat 2 30 0 1589 224 26 28 chr1 102603593 102604021 -140060332 - L1M4c LINE L1 -4656 1728 1302 1147 140 74 13 chr1 102604015 102604244 -140060109 - L1MB3 LINE L1 -118 6065 5823 * 2343 99 0 3 chr1 102604573 102604885 -140059468 - AluSx SINE Alu -1 311 1 1563 208 3 7 chr1 102608344 102608642 -140055711 + AluJo SINE Alu 1 297 -15 262 321 28 0 chr1 102608740 102608846 -140055507 + L1ME LINE L1 5724 5832 -289 386 285 207 0 chr1 102608921 102609114 -140055239 + MIR SINE MIR 3 235 -27 21 0 0 0 chr1 102609307 102609328 -140055025 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 102611212 102611236 -140053117 + AT_rich Low_complexity Low_complexity 1 24 0 952 174 0 45 chr1 102611345 102611523 -140052830 - AluJo SINE Alu -51 261 92 2770 149 67 36 chr1 102611564 102611749 -140052604 - Tigger1 DNA MER2_type -1795 623 445 1740 161 20 10 chr1 102611749 102612048 -140052305 - AluJo SINE Alu -10 302 1 2770 149 67 36 chr1 102612048 102612384 -140051969 - Tigger1 DNA MER2_type -1973 445 86 529 221 49 25 chr1 102612504 102612626 -140051727 + FLAM_A SINE Alu 1 125 -8 1407 197 21 17 chr1 102612992 102613281 -140051072 + AluJb SINE Alu 1 290 -22 21 0 0 0 chr1 102613509 102613530 -140050823 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 102613811 102613840 -140050513 + AT_rich Low_complexity Low_complexity 1 29 0 226 243 15 118 chr1 102614087 102614223 -140050130 + MIR3 SINE MIR 2 123 -85 22 0 0 0 chr1 102614437 102614459 -140049894 + AT_rich Low_complexity Low_complexity 1 22 0 2099 102 6 49 chr1 102615247 102615572 -140048781 + AluSq SINE Alu 1 311 -2 2246 115 0 0 chr1 102617040 102617336 -140047017 - AluSx SINE Alu -16 296 1 23 78 0 0 chr1 102617410 102617461 -140046892 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr1 102617624 102617648 -140046705 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr1 102618441 102618466 -140045887 + (T)n Simple_repeat Simple_repeat 1 25 0 532 156 92 37 chr1 102618497 102618606 -140045747 - FRAM SINE Alu -17 159 45 579 165 9 9 chr1 102619085 102619194 -140045159 - L1MC1 LINE L1 -81 6252 6144 381 291 81 78 chr1 102620614 102621034 -140043319 + L3 LINE CR1 480 986 -591 286 211 0 0 chr1 102621039 102621091 -140043262 + L3 LINE CR1 1235 1286 -291 325 333 101 25 chr1 102621127 102621286 -140043067 + L3 LINE CR1 1406 1576 -1 182 231 154 0 chr1 102621405 102621457 -140042896 + L2 LINE L2 3210 3269 -3 376 309 96 0 chr1 102621465 102621601 -140042752 + MIR3 SINE MIR 47 195 -13 456 259 65 29 chr1 102622255 102622394 -140041959 - MIR3 SINE MIR -62 146 3 23 0 0 0 chr1 102623180 102623203 -140041150 + AT_rich Low_complexity Low_complexity 1 23 0 2346 88 7 0 chr1 102623510 102623807 -140040546 + AluSx SINE Alu 1 299 -13 28 29 0 0 chr1 102624474 102624509 -140039844 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr1 102624791 102624811 -140039542 + (T)n Simple_repeat Simple_repeat 1 20 0 213 65 0 0 chr1 102624962 102624993 -140039360 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1922 277 114 90 chr1 102625197 102625528 -140038825 - L2 LINE L2 -243 3070 2748 2300 92 3 0 chr1 102625528 102625821 -140038532 + AluSx SINE Alu 1 294 -18 1922 277 114 90 chr1 102625821 102626175 -140038178 - L2 LINE L2 -565 2748 2404 249 98 0 0 chr1 102626175 102626216 -140038137 + (CA)n Simple_repeat Simple_repeat 2 42 0 1922 277 114 90 chr1 102626216 102627295 -140037058 - L2 LINE L2 -909 2404 1285 299 271 101 8 chr1 102627295 102627424 -140036929 - L2 LINE L2 -1883 1431 1291 25 0 0 0 chr1 102628825 102628850 -140035503 + AT_rich Low_complexity Low_complexity 1 25 0 1614 193 10 13 chr1 102629756 102630056 -140034297 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 102630064 102630085 -140034268 + AT_rich Low_complexity Low_complexity 1 21 0 2197 123 0 7 chr1 102630194 102630504 -140033849 - AluSx SINE Alu -4 308 1 569 288 38 64 chr1 102630696 102630784 -140033569 - MIR SINE MIR -3 259 170 1531 170 83 0 chr1 102630784 102631060 -140033293 + AluJo SINE Alu 1 299 -13 569 288 38 64 chr1 102631060 102631235 -140033118 - MIR SINE MIR -92 170 3 428 266 148 24 chr1 102631250 102631419 -140032934 - MIR3 SINE MIR -1 207 18 2323 74 0 29 chr1 102634661 102634970 -140029383 + AluY SINE Alu 1 300 -11 3111 168 50 21 chr1 102636248 102636831 -140027522 + MER106B DNA MER1_type 1 610 -449 2041 164 0 10 chr1 102636831 102637141 -140027212 + AluJo SINE Alu 1 307 -5 3111 168 50 21 chr1 102637141 102637271 -140027082 + MER106B DNA MER1_type 610 735 -324 23 68 0 0 chr1 102639086 102639130 -140025223 + AT_rich Low_complexity Low_complexity 1 44 0 325 113 38 0 chr1 102639166 102639254 -140025099 - AluS SINE Alu 0 317 228 1930 139 6 63 chr1 102639423 102639614 -140024739 - AluSx SINE Alu 0 312 146 2186 109 3 3 chr1 102639614 102639908 -140024445 - AluSq SINE Alu -19 294 1 1930 139 6 63 chr1 102639908 102640047 -140024306 - AluSx SINE Alu -166 146 1 1919 112 11 11 chr1 102640332 102640619 -140023734 - AluY SINE Alu -24 287 1 2343 67 0 10 chr1 102640718 102641016 -140023337 + AluY SINE Alu 1 295 -16 1816 140 21 3 chr1 102641110 102641396 -140022957 + AluJb SINE Alu 1 291 -21 219 36 0 0 chr1 102641396 102641424 -140022929 + (TG)n Simple_repeat Simple_repeat 2 29 0 1241 249 91 16 chr1 102641692 102642122 -140022231 - MLT1C LTR MaLR 0 467 6 10192 137 79 52 chr1 102642874 102645102 -140019251 + Tigger7 DNA MER2_type 108 2397 -90 724 123 9 0 chr1 102645102 102645208 -140019145 + AluJb SINE Alu 1 107 -205 2073 183 109 32 chr1 102645275 102645845 -140018508 - L1MD2 LINE L1 -244 6115 5502 255 279 122 99 chr1 102645922 102646094 -140018259 - L3 LINE CR1 -17 1560 1385 234 354 124 0 chr1 102646725 102646838 -140017515 + MER5A DNA MER1_type 58 184 -5 28 48 0 0 chr1 102648592 102648634 -140015719 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr1 102650127 102650153 -140014200 + AT_rich Low_complexity Low_complexity 1 26 0 1448 192 46 18 chr1 102650188 102650469 -140013884 + AluJo SINE Alu 1 289 -23 180 0 0 0 chr1 102650765 102650785 -140013568 + (T)n Simple_repeat Simple_repeat 1 20 0 721 208 94 0 chr1 102650860 102651009 -140013344 - FAM SINE Alu -12 163 1 24 0 0 0 chr1 102651352 102651376 -140012977 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 102651496 102651517 -140012836 + AT_rich Low_complexity Low_complexity 1 21 0 1223 174 174 15 chr1 102651801 102652060 -140012293 + AluSg SINE Alu 1 300 0 21 71 0 0 chr1 102652288 102652330 -140012023 + AT_rich Low_complexity Low_complexity 1 42 0 1050 122 131 5 chr1 102652456 102652677 -140011676 + MER106B DNA MER1_type 325 573 -486 1385 173 97 28 chr1 102652680 102652969 -140011384 + AluJo SINE Alu 1 309 -3 2589 40 3 0 chr1 102653075 102653378 -140010975 + AluY SINE Alu 1 304 -7 884 265 111 4 chr1 102653384 102653618 -140010735 + MIR SINE MIR 3 261 -1 2166 105 24 0 chr1 102653803 102654098 -140010255 - AluSc SINE Alu -7 302 1 286 290 114 30 chr1 102654455 102654586 -140009767 + MIR SINE MIR 46 187 -75 262 222 0 19 chr1 102655579 102655633 -140008720 - MIR3 SINE MIR -18 190 138 1710 73 131 4 chr1 102655808 102656053 -140008300 + AluSg1 SINE Alu 1 276 -33 497 231 84 42 chr1 102656368 102656511 -140007842 - MIR SINE MIR -34 228 80 325 315 45 0 chr1 102656556 102656645 -140007708 - MIR SINE MIR -168 94 2 898 62 86 0 chr1 102656717 102656845 -140007508 - MER85 DNA T2_type 0 139 1 2092 128 0 22 chr1 102657547 102657866 -140006487 + AluSx SINE Alu 1 312 0 401 301 118 63 chr1 102657877 102658155 -140006198 + HAL1 LINE L1 1316 1616 -891 889 222 0 0 chr1 102658155 102658322 -140006031 + FAM SINE Alu 1 167 -8 401 301 118 63 chr1 102658322 102658375 -140005978 + HAL1 LINE L1 1616 1665 -842 2188 112 10 3 chr1 102658579 102658875 -140005478 - AluSx SINE Alu -14 298 1 2014 135 3 23 chr1 102658926 102659230 -140005123 + AluSx SINE Alu 1 298 -14 281 194 65 21 chr1 102659384 102659477 -140004876 + L1MEd LINE L1 313 409 -6007 871 287 68 55 chr1 102659544 102660001 -140004352 + L1MEd LINE L1 526 988 -5428 1124 219 171 128 chr1 102660001 102660516 -140003837 + MLT1E LTR MaLR 3 590 -3 459 130 138 16 chr1 102660517 102660640 -140003713 + L1MEd LINE L1 1871 2008 -4418 555 135 218 0 chr1 102660649 102660782 -140003571 + L1MEd LINE L1 2059 2220 -4206 1268 92 0 0 chr1 102660794 102660979 -140003374 - L1MA2 LINE L1 0 6304 6120 8230 129 13 10 chr1 102661011 102663349 -140001004 - L1MA2 LINE L1 -165 6139 3797 3230 231 58 23 chr1 102663365 102663786 -140000567 + L1MEd LINE L1 2243 2648 -3778 2135 95 0 20 chr1 102663786 102664081 -140000272 + AluSc SINE Alu 1 289 -20 3230 231 58 23 chr1 102664081 102664998 -139999355 + L1MEd LINE L1 2648 3623 -2803 1565 181 64 0 chr1 102664999 102665116 -139999237 + AluJo SINE Alu 1 109 -203 333 0 0 0 chr1 102665116 102665153 -139999200 + (CA)n Simple_repeat Simple_repeat 2 38 0 1565 181 64 0 chr1 102665153 102665316 -139999037 + AluJo SINE Alu 109 299 -13 3270 101 159 100 chr1 102665328 102666645 -139997708 + pTR5 LTR ERV1 743 2438 0 3557 240 24 25 chr1 102666651 102667759 -139996594 + L1MEd LINE L1 3626 4731 -1695 588 165 28 0 chr1 102667762 102667871 -139996482 + FLAM_A SINE Alu 21 132 -10 2730 119 129 41 chr1 102667874 102668454 -139995899 + L1MA7 LINE L1 5530 6160 -131 260 191 64 11 chr1 102668578 102668672 -139995681 + L1MEd LINE L1 1000 1098 -5021 2164 99 3 48 chr1 102669171 102669485 -139994868 - AluSg SINE Alu -10 300 1 619 190 17 35 chr1 102669578 102669694 -139994659 + FLAM_A SINE Alu 3 116 -17 3693 81 15 20 chr1 102669697 102670238 -139994115 - L1PA14 LINE L1 -1 6160 5623 33 0 0 0 chr1 102670302 102670335 -139994018 + AT_rich Low_complexity Low_complexity 1 33 0 247 97 16 48 chr1 102670355 102670417 -139993936 + (TA)n Simple_repeat Simple_repeat 1 60 0 225 0 0 0 chr1 102670532 102670557 -139993796 + (CA)n Simple_repeat Simple_repeat 2 26 0 335 188 36 0 chr1 102670584 102670696 -139993657 + (TA)n Simple_repeat Simple_repeat 1 116 0 21 0 0 0 chr1 102670924 102670945 -139993408 + AT_rich Low_complexity Low_complexity 1 21 0 204 222 14 111 chr1 102671007 102671079 -139993274 - L2 LINE L2 -1 3312 3248 413 258 103 26 chr1 102671088 102671243 -139993110 - MIR SINE MIR -5 257 91 291 302 123 60 chr1 102671224 102671492 -139992861 + L2 LINE L2 2673 2957 -357 * 213 200 0 22 chr1 102671714 102671759 -139992594 + (CA)n Simple_repeat Simple_repeat 1 44 0 1823 164 11 3 chr1 102671759 102672046 -139992307 - AluJo SINE Alu -23 289 1 257 246 18 0 chr1 102672057 102672114 -139992239 + L2 LINE L2 3194 3251 -21 2284 96 6 25 chr1 102672512 102672826 -139991527 + AluSx SINE Alu 1 308 -4 469 189 176 137 chr1 102672910 102673143 -139991210 - MIR SINE MIR -6 256 15 331 339 18 0 chr1 102673222 102673334 -139991019 + L2 LINE L2 2599 2712 -602 232 321 142 101 chr1 102673542 102673860 -139990493 + L2 LINE L2 2926 3256 -16 246 295 167 13 chr1 102673875 102673953 -139990400 + MIR SINE MIR 32 121 -87 331 228 132 42 chr1 102674232 102674294 -139990059 + L1ME4a LINE L1 5764 5819 -302 2487 62 0 20 chr1 102674294 102674599 -139989754 + AluSx SINE Alu 2 300 -12 331 228 132 42 chr1 102674599 102674703 -139989650 + L1ME4a LINE L1 5819 5945 -176 878 126 0 15 chr1 102676249 102676384 -139987969 + FLAM_C SINE Alu 1 133 0 2348 68 0 7 chr1 102676831 102677127 -139987226 - AluSg1 SINE Alu -13 296 3 402 311 33 8 chr1 102678165 102678287 -139986066 + MIR SINE MIR 26 150 -112 47 33 0 0 chr1 102679417 102679478 -139984875 + AT_rich Low_complexity Low_complexity 1 61 0 1823 258 96 24 chr1 102680226 102680938 -139983415 + L1MC4a LINE L1 5263 6025 -1783 34 55 0 0 chr1 102681068 102681123 -139983230 + AT_rich Low_complexity Low_complexity 1 55 0 534 264 49 80 chr1 102681146 102681454 -139982899 - L1ME LINE L1 -400 5770 5474 406 257 91 27 chr1 102682123 102682310 -139982043 - L1ME4a LINE L1 -199 5922 5724 270 225 70 0 chr1 102682331 102682402 -139981951 + L1ME LINE L1 5723 5798 -323 255 268 28 0 chr1 102682482 102682553 -139981800 + MIR SINE MIR 175 247 -15 226 246 0 18 chr1 102682639 102682696 -139981657 + (TATG)n Simple_repeat Simple_repeat 2 57 0 336 277 169 12 chr1 102683505 102683671 -139980682 - HAL1 LINE L1 -605 1902 1711 408 294 84 0 chr1 102683853 102683996 -139980357 - HAL1 LINE L1 -1056 1451 1297 5689 87 21 2 chr1 102684012 102684836 -139979517 - L1MA2 LINE L1 0 6304 5466 1952 141 20 14 chr1 102684839 102685136 -139979217 - AluJb SINE Alu -13 299 1 411 235 229 43 chr1 102685148 102685383 -139978970 - HAL1 LINE L1 -1365 1142 952 2370 76 3 0 chr1 102685383 102685672 -139978681 + AluSc SINE Alu 1 290 -19 411 235 229 43 chr1 102685672 102685781 -139978572 - HAL1 LINE L1 -1555 952 734 359 354 81 37 chr1 102686372 102686643 -139977710 - HAL1 LINE L1 -1954 553 271 31 96 0 0 chr1 102686805 102686899 -139977454 + AT_rich Low_complexity Low_complexity 1 94 0 1646 176 3 20 chr1 102687612 102687913 -139976440 - AluJo SINE Alu -16 296 1 663 239 136 0 chr1 102687992 102688147 -139976206 + MER5A DNA MER1_type 2 177 -12 234 201 239 0 chr1 102688159 102688293 -139976060 - L1M4 LINE L1 -1670 4476 4311 280 304 120 25 chr1 102688382 102688750 -139975603 - L1M4 LINE L1 -1938 4208 3806 22 35 0 0 chr1 102689048 102689077 -139975276 + AT_rich Low_complexity Low_complexity 1 29 0 327 330 108 28 chr1 102689618 102689794 -139974559 + MIR SINE MIR 2 191 -71 2060 131 0 0 chr1 102690043 102690346 -139974007 - AluSx SINE Alu 0 303 1 280 324 29 29 chr1 102690487 102690623 -139973730 - L2 LINE L2 -462 2852 2717 874 259 42 45 chr1 102690668 102691147 -139973206 + MLT1A1 LTR MaLR 1 365 0 739 290 72 56 chr1 102691252 102691312 -139973041 + L1M4 LINE L1 2219 2277 -3869 1822 183 0 3 chr1 102691312 102691612 -139972741 + AluJb SINE Alu 3 301 -11 739 290 72 56 chr1 102691612 102692774 -139971579 + L1M4 LINE L1 2277 3460 -2686 213 213 0 0 chr1 102692776 102692823 -139971530 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1689 215 131 49 chr1 102692909 102693010 -139971343 + L1ME3 LINE L1 5447 5538 -624 2618 58 0 0 chr1 102693010 102693320 -139971033 - AluY SINE Alu -1 310 1 1689 215 131 49 chr1 102693320 102693854 -139970499 + L1ME3 LINE L1 5538 6134 -28 1543 208 3 10 chr1 102693923 102694216 -139970137 - AluJo SINE Alu -21 291 1 353 189 82 41 chr1 102694224 102694346 -139970007 - MER74B LTR ERVL 0 622 496 4113 148 19 25 chr1 102694346 102695035 -139969318 - MER52A LTR ERV1 0 1755 1071 1763 165 34 0 chr1 102695253 102695544 -139968809 - AluJo SINE Alu -10 302 2 22 0 0 0 chr1 102695598 102695620 -139968733 + AT_rich Low_complexity Low_complexity 1 22 0 601 198 0 0 chr1 102695629 102695740 -139968613 + FLAM_C SINE Alu 1 111 -32 22 0 0 0 chr1 102696520 102696542 -139967811 + AT_rich Low_complexity Low_complexity 1 22 0 226 285 60 53 chr1 102697782 102697933 -139966420 - L2 LINE L2 -1021 2293 2142 445 336 35 7 chr1 102697960 102698103 -139966250 - L2 LINE L2 -5 3267 3121 420 341 197 23 chr1 102698263 102698954 -139965399 - L2 LINE L2 -568 2746 1936 948 202 0 0 chr1 102698954 102699122 -139965231 + FRAM SINE Alu 1 167 -9 198 339 98 18 chr1 102699125 102699349 -139965004 - L2 LINE L2 -1363 1951 1710 249 0 0 0 chr1 102700028 102700062 -139964291 - L1PA3 LINE L1 -3 6152 6119 244 316 53 0 chr1 102701248 102701324 -139963029 - MIR3 SINE MIR -41 167 88 1269 193 158 40 chr1 102701573 102701997 -139962356 - HsTC2 DNA Tc2 -2 1896 1423 499 234 37 0 chr1 102702111 102702218 -139962135 + MIR SINE MIR 65 175 -87 3428 187 77 13 chr1 102702888 102703595 -139960758 - L1MB7 LINE L1 0 6184 5423 1603 127 131 8 chr1 102703595 102703862 -139960491 - AluSg SINE Alu 0 300 1 3428 187 77 13 chr1 102703862 102703918 -139960435 - L1MB7 LINE L1 -761 5423 5372 2086 126 3 0 chr1 102703937 102704231 -139960122 - AluSc SINE Alu -14 295 1 2330 92 3 0 chr1 102704231 102704525 -139959828 - AluSp SINE Alu -18 295 1 370 331 118 0 chr1 102704778 102704905 -139959448 - MIR3 SINE MIR -31 177 36 1729 164 28 7 chr1 102705048 102705335 -139959018 + AluJo SINE Alu 1 293 -19 375 243 54 20 chr1 102705824 102705972 -139958381 - L1ME3 LINE L1 -279 5883 5731 2337 77 7 10 chr1 102706262 102706559 -139957794 + AluSg SINE Alu 1 296 -14 701 286 75 6 chr1 102706972 102707341 -139957012 - L1ME LINE L1 -298 5823 5425 21 36 0 0 chr1 102707602 102707630 -139956723 + AT_rich Low_complexity Low_complexity 1 28 0 1580 70 33 0 chr1 102707630 102707844 -139956509 - L1PA13 LINE L1 -1 6162 5942 317 208 61 144 chr1 102707978 102708008 -139956345 - L1ME2 LINE L1 -15 6319 6288 3539 124 11 9 chr1 102708008 102708534 -139955819 - MER1A DNA MER1_type 0 527 1 317 208 61 144 chr1 102708534 102708675 -139955678 - L1ME2 LINE L1 -46 6288 6000 1190 209 113 12 chr1 102708730 102709074 -139955279 - L1M4 LINE L1 -3068 4497 4119 595 200 61 0 chr1 102709393 102709508 -139954845 - FLAM_A SINE Alu -11 122 1 371 311 59 8 chr1 102710613 102710732 -139953621 - MER5A DNA MER1_type -4 185 61 1749 170 19 16 chr1 102710733 102711044 -139953309 - AluJo SINE Alu 0 312 1 197 262 0 0 chr1 102711171 102711213 -139953140 + L3b LINE CR1 1285 1326 -257 313 219 49 0 chr1 102711511 102711593 -139952760 - L1ME4a LINE L1 -67 6054 5969 2180 113 10 3 chr1 102712217 102712526 -139951827 - AluSx SINE Alu -1 311 1 219 175 25 0 chr1 102712653 102712693 -139951660 + (CA)n Simple_repeat Simple_repeat 2 42 0 406 344 28 17 chr1 102713292 102713373 -139950980 + MIR3 SINE MIR 19 98 -110 226 0 0 56 chr1 102713373 102713409 -139950944 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 406 344 28 17 chr1 102713409 102713507 -139950846 + MIR3 SINE MIR 98 200 -8 3531 216 84 15 chr1 102713853 102715331 -139949022 - L1M4 LINE L1 -3552 4013 2423 387 60 0 0 chr1 102715332 102715382 -139948971 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 1172 182 47 47 chr1 102715409 102715667 -139948686 - AluJb SINE Alu -44 268 11 1750 286 28 6 chr1 102715676 102716221 -139948132 - L1M4 LINE L1 -5131 2434 1878 608 358 57 33 chr1 102716688 102717289 -139947064 - L1M3a LINE L1 -5255 700 86 180 0 0 0 chr1 102717314 102717334 -139947019 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 424 103 13 26 chr1 102717497 102717575 -139946778 - L1PB3 LINE L1 -1 6153 6077 265 204 0 0 chr1 102717578 102717632 -139946721 - L1M3a LINE L1 -5882 73 20 200 357 71 0 chr1 102718144 102718228 -139946125 + L2 LINE L2 3171 3260 -12 2415 88 0 0 chr1 102718282 102718590 -139945763 - AluSg SINE Alu -2 308 1 1660 186 0 17 chr1 102718788 102719146 -139945207 + AluJb SINE Alu 1 353 0 605 78 56 0 chr1 102719985 102720075 -139944278 + L1MB4 LINE L1 6080 6174 -6 2168 121 0 19 chr1 102720294 102720608 -139943745 + AluSg SINE Alu 1 308 -2 352 103 9 9 chr1 102771450 102771514 -139892839 - Alu SINE Alu -263 45 1 2064 125 3 0 chr1 102771569 102771864 -139892489 - AluSc SINE Alu -13 296 1 2298 92 3 0 chr1 102771864 102772158 -139892195 - AluSp SINE Alu -18 295 1 363 339 118 0 chr1 102772411 102772538 -139891815 - MIR3 SINE MIR -31 177 36 1730 160 28 7 chr1 102772681 102772968 -139891385 + AluJo SINE Alu 1 293 -19 387 243 54 20 chr1 102773457 102773605 -139890748 - L1ME3 LINE L1 -279 5883 5731 2262 81 7 10 chr1 102773895 102774190 -139890163 + AluSg SINE Alu 1 294 -16 730 290 94 22 chr1 102774509 102774951 -139889402 - L1ME2 LINE L1 -278 5886 5425 21 36 0 0 chr1 102775212 102775240 -139889113 + AT_rich Low_complexity Low_complexity 1 28 0 1575 70 33 0 chr1 102775240 102775454 -139888899 - L1PA13 LINE L1 -1 6162 5942 321 208 61 144 chr1 102775588 102775618 -139888735 - L1ME2 LINE L1 -15 6319 6288 3522 120 11 9 chr1 102775618 102776144 -139888209 - MER1A DNA MER1_type 0 527 1 321 208 61 144 chr1 102776144 102776285 -139888068 - L1ME2 LINE L1 -46 6288 6000 1215 209 113 12 chr1 102776340 102776684 -139887669 - L1M4 LINE L1 -3068 3078 2700 585 200 61 0 chr1 102777003 102777118 -139887235 - FLAM_A SINE Alu -11 122 1 369 311 59 8 chr1 102778223 102778342 -139886011 - MER5A DNA MER1_type -4 185 61 1729 170 19 16 chr1 102778343 102778654 -139885699 - AluJo SINE Alu 0 312 1 197 262 0 0 chr1 102778781 102778823 -139885530 + L3b LINE CR1 1285 1326 -257 321 219 49 0 chr1 102779121 102779203 -139885150 - L1ME4a LINE L1 -67 6054 5969 2471 56 7 7 chr1 102779827 102780132 -139884221 - AluY SINE Alu -6 305 1 1295 177 44 20 chr1 102780352 102780600 -139883753 - AluJb SINE Alu -21 291 38 211 232 18 36 chr1 102780855 102780911 -139883442 - MIR SINE MIR -114 94 40 1290 119 52 0 chr1 102781149 102781359 -139882994 - Tigger7 DNA MER2_type 0 2587 2367 5730 142 35 26 chr1 102781381 102781415 -139882938 - Tigger7 DNA MER2_type -1494 993 961 2113 112 0 14 chr1 102781415 102781710 -139882643 - AluSg SINE Alu -19 291 1 5730 142 35 26 chr1 102781710 102782660 -139881693 - Tigger7 DNA MER2_type -1526 961 1 1934 216 125 45 chr1 102782665 102783490 -139880863 + L1MDa LINE L1 1358 2248 -4292 6061 86 14 1 chr1 102783519 102784347 -139880006 - L1PA11 LINE L1 -2 6172 5334 30 45 0 0 chr1 102784440 102784484 -139879869 + AT_rich Low_complexity Low_complexity 1 44 0 940 188 43 11 chr1 102784855 102785041 -139879312 - AluJo SINE Alu -1 311 120 569 335 43 10 chr1 102785453 102785662 -139878691 + MIR SINE MIR 3 218 -44 369 0 0 0 chr1 102786799 102786840 -139877513 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 83 0 0 chr1 102786944 102787004 -139877349 + AT_rich Low_complexity Low_complexity 1 60 0 317 296 44 24 chr1 102787154 102787360 -139876993 - L1MC4 LINE L1 -144 7898 7689 360 215 75 0 chr1 102787362 102787445 -139876908 + MER5A DNA MER1_type 4 94 -95 431 338 10 5 chr1 102787510 102787711 -139876642 - L1MC4a LINE L1 -522 7286 7085 2181 121 0 0 chr1 102788393 102788691 -139875662 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr1 102789423 102789443 -139874910 + (TA)n Simple_repeat Simple_repeat 2 21 0 2030 142 0 0 chr1 102789443 102789732 -139874621 - AluSx SINE Alu -23 289 1 1919 103 69 31 chr1 102790073 102790364 -139873989 - AluSx SINE Alu -8 304 3 199 316 76 25 chr1 102790386 102790465 -139873888 + L2 LINE L2 3188 3270 -2 1921 132 0 14 chr1 102790581 102790870 -139873483 + AluJb SINE Alu 12 296 -16 204 111 0 0 chr1 102790870 102790906 -139873447 + (TA)n Simple_repeat Simple_repeat 2 37 0 955 273 45 21 chr1 102790925 102791362 -139872991 - LTR33A LTR ERVL 0 523 2 1250 123 0 0 chr1 102791821 102791991 -139872362 - AluSg/x SINE Alu -12 300 131 2133 83 48 17 chr1 102793118 102793408 -139870945 + AluY SINE Alu 1 299 -12 22 88 0 0 chr1 102794271 102794328 -139870025 + AT_rich Low_complexity Low_complexity 1 57 0 27 0 0 0 chr1 102794428 102794455 -139869898 + AT_rich Low_complexity Low_complexity 1 27 0 200 188 0 0 chr1 102794717 102794749 -139869604 + (CAA)n Simple_repeat Simple_repeat 2 33 0 556 268 79 43 chr1 102794793 102795047 -139869306 - MER68 LTR ERV1 -120 442 180 2037 139 0 0 chr1 102795587 102795881 -139868472 + AluSx SINE Alu 1 294 -18 334 279 43 64 chr1 102796390 102796504 -139867849 - HAL1 LINE L1 -475 2032 1924 2194 96 7 0 chr1 102796504 102796795 -139867558 - AluSp SINE Alu -20 293 1 334 279 43 64 chr1 102796795 102796913 -139867440 - HAL1 LINE L1 -583 1924 1805 2406 89 0 0 chr1 102797054 102797358 -139866995 - AluSc SINE Alu -5 304 1 1398 184 16 36 chr1 102797677 102797835 -139866518 - AluJb SINE Alu -8 304 153 333 0 0 0 chr1 102797835 102797872 -139866481 + (TG)n Simple_repeat Simple_repeat 1 37 0 1398 184 16 36 chr1 102797872 102798022 -139866331 - AluJb SINE Alu -159 153 2 901 282 93 30 chr1 102798091 102798758 -139865595 - L2 LINE L2 -1054 2260 1459 274 363 44 9 chr1 102799493 102799606 -139864747 + L2 LINE L2 3154 3270 -2 532 166 7 138 chr1 102799697 102799842 -139864511 - MER5B DNA MER1_type -1 177 52 1400 253 250 25 chr1 102800170 102800775 -139863578 + L2 LINE L2 56 796 -2518 365 281 129 43 chr1 102801621 102801760 -139862593 + MIR3 SINE MIR 30 180 -28 569 275 69 23 chr1 102803093 102803311 -139861042 - MIR SINE MIR -16 246 19 1260 277 99 61 chr1 102803499 102803874 -139860479 + L2 LINE L2 2124 2483 -831 1930 122 43 0 chr1 102803874 102804153 -139860200 - AluSq SINE Alu -22 291 1 1260 277 99 61 chr1 102804153 102804342 -139860011 + L2 LINE L2 2483 2717 -597 2150 132 0 7 chr1 102804342 102804645 -139859708 + AluSg SINE Alu 3 303 -7 1260 277 99 61 chr1 102804645 102804718 -139859635 + L2 LINE L2 2717 2786 -528 1606 181 54 23 chr1 102804721 102805075 -139859278 + L1MB5 LINE L1 5417 5781 -393 2268 121 74 0 chr1 102805075 102805414 -139858939 - THE1B LTR MaLR 0 364 1 10795 95 52 3 chr1 102805414 102806920 -139857433 - THE1B-int LTR MaLR 0 1580 1 2127 131 83 0 chr1 102806920 102807256 -139857097 - THE1B LTR MaLR 0 364 1 1849 154 51 31 chr1 102807256 102807646 -139856707 + L1MB5 LINE L1 5777 6174 0 610 301 194 35 chr1 102807703 102808075 -139856278 + L2 LINE L2 2883 3313 0 32 43 0 0 chr1 102809854 102809900 -139854453 + AT_rich Low_complexity Low_complexity 1 46 0 928 150 6 24 chr1 102809954 102810121 -139854232 - FRAM SINE Alu -9 167 4 6861 152 15 29 chr1 102810125 102810301 -139854052 - L1 LINE L1 -1699 4335 4158 1809 185 0 3 chr1 102810301 102810609 -139853744 - AluJb SINE Alu 0 312 6 6861 152 15 29 chr1 102810609 102810905 -139853448 - L1 LINE L1 -1876 4158 3860 2381 88 0 3 chr1 102810905 102811212 -139853141 - AluSg1 SINE Alu -3 306 1 6861 152 15 29 chr1 102811212 102811592 -139852761 - L1 LINE L1 -2174 3860 3476 1917 163 10 0 chr1 102811592 102811893 -139852460 + AluJb SINE Alu 1 304 -8 6861 152 15 29 chr1 102811893 102812404 -139851949 - L1 LINE L1 -2558 3476 2988 281 108 0 0 chr1 102812458 102812495 -139851858 - FLAM SINE Alu -10 123 87 346 226 0 0 chr1 102812546 102812630 -139851723 + L1 LINE L1 2709 2792 -3354 3531 221 64 26 chr1 102812689 102813081 -139851272 - L1 LINE L1 -3071 2963 2588 1530 114 9 9 chr1 102813081 102813301 -139851052 + AluJo SINE Alu 87 306 -6 3531 221 64 26 chr1 102813301 102814893 -139849460 - L1 LINE L1 -3446 2588 892 351 65 0 0 chr1 102814894 102814940 -139849413 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1176 186 43 43 chr1 102814967 102815225 -139849128 - AluJb SINE Alu -44 268 11 1750 286 28 6 chr1 102815234 102815779 -139848574 - L1 LINE L1 -5131 903 347 705 354 5 29 chr1 102816471 102816847 -139847506 - L1 LINE L1 -5503 452 86 180 0 0 0 chr1 102816872 102816892 -139847461 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 424 103 13 26 chr1 102817055 102817133 -139847220 - L1PB3 LINE L1 -1 6153 6077 265 204 0 0 chr1 102817136 102817190 -139847163 - L1 LINE L1 -5882 73 20 200 357 71 0 chr1 102817702 102817786 -139846567 + L2 LINE L2 3171 3260 -12 2423 87 0 0 chr1 102817840 102818149 -139846204 - AluSg SINE Alu -1 309 1 1660 186 0 17 chr1 102818347 102818696 -139845657 + AluJb SINE Alu 1 344 0 605 78 56 0 chr1 102819535 102819625 -139844728 + L1MB4 LINE L1 6080 6174 -6 2168 121 0 19 chr1 102819844 102820158 -139844195 + AluSg SINE Alu 1 308 -2 197 28 83 69 chr1 102820954 102821026 -139843327 + (TTAA)n Simple_repeat Simple_repeat 4 76 0 23 0 0 0 chr1 102821536 102821559 -139842794 + AT_rich Low_complexity Low_complexity 1 23 0 726 230 124 6 chr1 102821934 102822112 -139842241 + MIR SINE MIR 3 201 -61 310 346 0 0 chr1 102822546 102822627 -139841726 - Charlie8 DNA MER1_type -2336 81 1 424 242 50 0 chr1 102822901 102823000 -139841353 - FLAM_A SINE Alu -26 116 13 2213 113 0 0 chr1 102823000 102823291 -139841062 + AluSp SINE Alu 1 291 -22 25 31 0 0 chr1 102823308 102823340 -139841013 + AT_rich Low_complexity Low_complexity 1 32 0 4420 60 9 0 chr1 102823522 102824076 -139840277 - L1PA7 LINE L1 0 6154 5596 342 209 54 62 chr1 102824169 102824298 -139840055 - L1MC5 LINE L1 -29 7932 7805 360 252 39 10 chr1 102824305 102824408 -139839945 + MER94 DNA DNA 6 111 -23 1762 140 76 31 chr1 102824748 102825104 -139839249 - THE1C LTR MaLR -3 372 1 9577 129 22 35 chr1 102825104 102826703 -139837650 - THE1C-int LTR MaLR 0 1580 3 369 115 0 0 chr1 102826734 102826786 -139837567 + MSTA LTR MaLR 341 392 -36 492 105 23 23 chr1 102826786 102826872 -139837481 - THE1-int LTR MaLR -451 1129 1044 1462 166 72 41 chr1 102826879 102827198 -139837155 - THE1C LTR MaLR -46 329 1 800 191 41 32 chr1 102827198 102827444 -139836909 - L1MC5 LINE L1 -240 7721 7474 496 110 0 0 chr1 102828119 102828192 -139836161 + AluS SINE Alu 1 73 -239 16202 49 10 2 chr1 102828556 102832321 -139832032 + L1PA5 LINE L1 2352 6138 -16 287 114 0 0 chr1 102833189 102833233 -139831120 - L2 LINE L2 -1 3312 3269 225 246 8 59 chr1 102833905 102834023 -139830330 + GA-rich Low_complexity Low_complexity 1 112 0 732 182 16 0 chr1 102834452 102834573 -139829780 + FLAM_A SINE Alu 1 123 -10 550 260 94 11 chr1 102835052 102835233 -139829120 + L2 LINE L2 3117 3312 -1 2067 266 108 28 chr1 102835350 102835964 -139828389 - L2 LINE L2 -1220 2094 1404 2586 46 0 0 chr1 102835964 102836266 -139828087 - AluY SINE Alu -9 302 1 2067 266 108 28 chr1 102836266 102836428 -139827925 - L2 LINE L2 -1910 1404 1256 436 277 22 71 chr1 102836428 102836612 -139827741 - MER20B DNA MER1_type -608 175 1 378 181 121 0 chr1 102836735 102836818 -139827535 - MIR SINE MIR -21 241 149 222 200 73 18 chr1 102836844 102836899 -139827454 - MIR SINE MIR -86 176 119 2228 102 0 0 chr1 102837021 102837316 -139827037 + AluSg1 SINE Alu 1 295 -14 1443 145 21 21 chr1 102837461 102837702 -139826651 + AluJo SINE Alu 1 241 -71 2069 133 10 3 chr1 102838014 102838307 -139826046 - AluSx SINE Alu -17 295 1 23 0 0 0 chr1 102838447 102838470 -139825883 + AT_rich Low_complexity Low_complexity 1 23 0 8312 55 1 0 chr1 102839683 102840648 -139823705 - LTR5 LTR ERVK -3 966 1 2174 98 0 7 chr1 102840864 102841187 -139823166 - AluSq SINE Alu 0 313 1 22 35 0 0 chr1 102841480 102841509 -139822844 + AT_rich Low_complexity Low_complexity 1 29 0 33 25 0 0 chr1 102841526 102841566 -139822787 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr1 102841648 102841669 -139822684 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 102842134 102842164 -139822189 + AT_rich Low_complexity Low_complexity 1 30 0 184 286 0 36 chr1 102842194 102842250 -139822103 - MIR SINE MIR 0 262 209 1528 91 7 130 chr1 102842253 102842299 -139822054 - THE1B LTR MaLR 0 364 314 2379 68 20 3 chr1 102842299 102842593 -139821760 + AluY SINE Alu 1 299 -12 1528 91 7 130 chr1 102842593 102842638 -139821715 - THE1B LTR MaLR -50 314 265 2082 118 3 7 chr1 102842638 102842934 -139821419 - AluSq SINE Alu -18 295 1 1528 91 7 130 chr1 102842934 102843148 -139821205 - THE1B LTR MaLR -99 265 96 616 224 92 27 chr1 102843305 102843725 -139820628 + L1MDa LINE L1 1290 1756 -4784 2229 142 91 5 chr1 102843804 102844198 -139820155 - MSTA LTR MaLR 0 428 1 1485 106 16 20 chr1 102844198 102844452 -139819901 - MSTA-int LTR MaLR 0 1580 1328 676 101 24 3 chr1 102844452 102844570 -139819783 - MSTA LTR MaLR -248 127 1 870 234 59 19 chr1 102844579 102844950 -139819403 + L1MDa LINE L1 2664 3049 -3491 1454 171 4 38 chr1 102844958 102845221 -139819132 + AluJb SINE Alu 1 254 -58 804 144 7 50 chr1 102845221 102845360 -139818993 + AluSg/x SINE Alu 140 272 -38 199 149 66 0 chr1 102845361 102845482 -139818871 + (TA)n Simple_repeat Simple_repeat 1 129 0 1708 200 0 3 chr1 102845496 102845796 -139818557 + AluJo SINE Alu 1 299 -13 420 252 112 0 chr1 102845837 102845980 -139818373 + L1MEc LINE L1 85 243 -6153 2565 224 69 32 chr1 102845985 102846493 -139817860 + L1MEc LINE L1 286 774 -5622 1106 165 0 0 chr1 102846493 102846657 -139817696 + FAM SINE Alu 2 165 -10 2565 224 69 32 chr1 102846657 102847110 -139817243 + L1MEc LINE L1 774 1282 -5114 1908 223 41 69 chr1 102847179 102847267 -139817086 + L1MEc LINE L1 1888 1977 -4238 2216 101 14 0 chr1 102847267 102847564 -139816789 - AluSc SINE Alu -8 301 1 1908 223 41 69 chr1 102847564 102848047 -139816306 + L1MEc LINE L1 1977 2472 -3743 2176 146 0 3 chr1 102848047 102848356 -139815997 + AluSx SINE Alu 1 308 -4 1908 223 41 69 chr1 102848356 102848367 -139815986 + L1MEc LINE L1 2472 2482 -3733 186 43 0 0 chr1 102848367 102848390 -139815963 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1908 223 41 69 chr1 102848390 102848935 -139815418 + L1MEc LINE L1 2482 2949 -3266 1496 218 3 3 chr1 102848937 102849221 -139815132 + AluJo SINE Alu 4 287 -25 2355 135 15 8 chr1 102849227 102849628 -139814725 + HSMAR2 DNA Mariner 875 1278 -24 422 240 45 7 chr1 102849649 102849803 -139814550 + L1MEc LINE L1 3092 3251 -2964 * 1962 178 66 35 chr1 102849799 102850221 -139814132 + L1MA3 LINE L1 12 446 -7119 2683 73 30 11 chr1 102850221 102850589 -139813764 + THE1C LTR MaLR 1 375 0 6329 98 50 53 chr1 102850589 102851630 -139812723 + THE1C-int LTR MaLR 1 1038 -542 2852 190 43 22 chr1 102851630 102852367 -139811986 - HUERS-P3 LTR ERV1 -8083 836 1 2292 174 43 77 chr1 102852367 102853001 -139811352 - LTR9 LTR ERV1 0 612 1 13508 167 42 17 chr1 102853006 102853307 -139811046 + L1MA3 LINE L1 3441 3733 -3991 2118 140 3 0 chr1 102853307 102853615 -139810738 + AluSx SINE Alu 1 309 -3 13508 167 42 17 chr1 102853615 102854788 -139809565 + L1MA3 LINE L1 3733 4875 -2849 2043 123 0 14 chr1 102854788 102855080 -139809273 - AluSx SINE Alu -24 288 1 13508 167 42 17 chr1 102855080 102855215 -139809138 + L1MA3 LINE L1 4875 5005 -2719 204 40 0 0 chr1 102855215 102855240 -139809113 + (CAA)n Simple_repeat Simple_repeat 2 26 0 13508 167 42 17 chr1 102855240 102857776 -139806577 + L1MA3 LINE L1 5005 7663 -61 830 176 0 0 chr1 102857776 102857907 -139806446 + FLAM_C SINE Alu 1 131 -2 13508 167 42 17 chr1 102857907 102857971 -139806382 + L1MA3 LINE L1 7663 7724 0 683 276 62 9 chr1 102857980 102858317 -139806036 + L1MEc LINE L1 3238 3592 -2623 21 36 0 0 chr1 102858395 102858423 -139805930 + AT_rich Low_complexity Low_complexity 1 28 0 2313 102 0 0 chr1 102858879 102859183 -139805170 + AluSx SINE Alu 1 304 -8 245 286 75 25 chr1 102859249 102859410 -139804943 + MER109 Unknown Unknown 69 237 -2195 4362 137 20 1 chr1 102859551 102860237 -139804116 - L1M1 LINE L1 -6851 714 16 363 23 0 0 chr1 102860262 102860306 -139804047 + (CA)n Simple_repeat Simple_repeat 2 45 0 1080 205 11 23 chr1 102860306 102860569 -139803784 + L1MEc LINE L1 4027 4286 -1929 1448 198 145 73 chr1 102860570 102861111 -139803242 + L1MEc LINE L1 4659 5258 -957 2472 73 0 0 chr1 102861111 102861412 -139802941 - AluY SINE Alu -10 301 1 1448 198 145 73 chr1 102861412 102861537 -139802816 + L1MEc LINE L1 5258 5373 -842 282 106 0 0 chr1 102861545 102861592 -139802761 + (TG)n Simple_repeat Simple_repeat 2 48 0 2192 82 0 11 chr1 102861592 102861874 -139802479 - AluSx SINE Alu -18 294 16 353 257 112 28 chr1 102861982 102862196 -139802157 + L1ME LINE L1 4996 5227 -919 236 232 73 8 chr1 102862255 102862378 -139801975 + L1ME LINE L1 5551 5686 -476 607 222 231 23 chr1 102862386 102862612 -139801741 - MLT1E2 LTR MaLR -199 427 249 1782 135 82 0 chr1 102862612 102862879 -139801474 - AluJo SINE Alu -23 289 1 607 222 231 23 chr1 102862879 102863002 -139801351 - MLT1E2 LTR MaLR -377 249 19 207 0 0 0 chr1 102863005 102863028 -139801325 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1692 152 51 4 chr1 102863034 102863310 -139801043 - AluJo SINE Alu -23 289 1 2335 92 3 0 chr1 102863513 102863807 -139800546 + AluSp SINE Alu 1 295 -18 217 298 0 0 chr1 102863979 102864026 -139800327 - MER5A DNA MER1_type -77 112 66 670 229 138 22 chr1 102864669 102864900 -139799453 + MER34C LTR ERV1 41 298 -287 260 174 41 82 chr1 102865049 102865147 -139799206 + MER34 LTR ERV1 449 542 0 410 304 311 7 chr1 102865209 102865781 -139798572 + L2 LINE L2 1948 2693 -621 446 208 0 19 chr1 102865952 102866058 -139798295 + LTR56 LTR ERV1 9 112 -333 2139 151 3 0 chr1 102866090 102866401 -139797952 - AluSx SINE Alu 0 312 1 637 215 42 88 chr1 102866463 102866567 -139797786 + LTR56 LTR ERV1 172 279 -166 1704 137 74 11 chr1 102866567 102866851 -139797502 - AluJo SINE Alu -10 302 1 637 215 42 88 chr1 102866851 102867006 -139797347 + LTR56 LTR ERV1 279 419 -26 638 130 10 0 chr1 102867006 102867106 -139797247 - FLAM_A SINE Alu -11 131 31 1817 154 39 0 chr1 102868797 102869076 -139795277 + AluJo SINE Alu 9 298 -14 228 370 44 37 chr1 102869079 102869214 -139795139 - L2 LINE L2 -12 3260 3125 339 183 49 12 chr1 102869414 102869496 -139794857 - L2 LINE L2 -2 3270 3186 2001 270 229 28 chr1 102869499 102871145 -139793208 + L2 LINE L2 1294 3312 -1 1747 191 27 0 chr1 102871356 102871655 -139792698 - AluJb SINE Alu -5 307 1 1283 194 116 24 chr1 102871994 102872365 -139791988 - L1ME1 LINE L1 -5 6161 5757 2131 133 7 0 chr1 102872416 102872725 -139791628 + AluSx SINE Alu 1 311 -1 21 71 0 0 chr1 102873043 102873085 -139791268 + AT_rich Low_complexity Low_complexity 1 42 0 4864 146 14 26 chr1 102873259 102873636 -139790717 + L1 LINE L1 4019 4399 -1747 2270 108 7 0 chr1 102873636 102873932 -139790421 + AluSq SINE Alu 2 299 -14 4864 146 14 26 chr1 102873932 102874493 -139789860 + L1 LINE L1 4399 4946 -1200 13761 160 23 59 chr1 102874494 102875238 -139789115 + L1M1 LINE L1 3173 3942 -3623 2560 52 3 10 chr1 102875238 102875548 -139788805 + AluY SINE Alu 1 308 -3 13761 160 23 59 chr1 102875548 102875835 -139788518 + L1M1 LINE L1 3942 4238 -3327 2112 153 0 3 chr1 102875835 102876148 -139788205 - AluSx SINE Alu 0 312 1 13761 160 23 59 chr1 102876148 102876583 -139787770 + L1M1 LINE L1 4238 4687 -2878 2089 114 17 3 chr1 102876583 102876880 -139787473 + AluSg SINE Alu 1 301 -9 13761 160 23 59 chr1 102876880 102877255 -139787098 + L1M1 LINE L1 4687 5074 -2491 642 133 0 0 chr1 102877255 102877353 -139787000 - AluY SINE Alu 0 311 214 13761 160 23 59 chr1 102877353 102877664 -139786689 + L1M1 LINE L1 5074 5395 -2170 1906 173 0 0 chr1 102877664 102877948 -139786405 - AluJo SINE Alu -28 284 1 13761 160 23 59 chr1 102877948 102878050 -139786303 + L1M1 LINE L1 5395 5499 -2066 2120 137 0 0 chr1 102878050 102878349 -139786004 + AluSx SINE Alu 1 299 -13 13761 160 23 59 chr1 102878349 102879193 -139785160 + L1M1 LINE L1 5499 6234 -1331 2340 106 0 3 chr1 102879193 102879504 -139784849 + AluSx SINE Alu 1 310 -2 13761 160 23 59 chr1 102879504 102879918 -139784435 + L1M1 LINE L1 6234 6661 -904 22 56 0 0 chr1 102879918 102879954 -139784399 + AT_rich Low_complexity Low_complexity 1 36 0 426 268 65 34 chr1 102880136 102880367 -139783986 + MLT1H LTR MaLR 22 299 -250 337 318 94 24 chr1 102880585 102880755 -139783598 + MER5A DNA MER1_type 4 185 -4 1829 239 69 43 chr1 102881426 102881965 -139782388 - MLT1H1 LTR MaLR -2 553 1 189 228 70 18 chr1 102882031 102882088 -139782265 + L2 LINE L2 2108 2167 -1147 288 0 0 0 chr1 102882111 102882146 -139782207 - MER30 DNA MER1_type -66 164 130 495 0 0 0 chr1 102882148 102882203 -139782150 + (TG)n Simple_repeat Simple_repeat 2 56 0 923 65 173 0 chr1 102882234 102882273 -139782080 - MER30 DNA MER1_type -66 164 133 315 0 0 0 chr1 102882273 102882308 -139782045 + (TG)n Simple_repeat Simple_repeat 2 36 0 923 65 173 0 chr1 102882308 102882407 -139781946 - MER30 DNA MER1_type -97 133 2 2327 269 47 53 chr1 102882407 102883269 -139781084 + L2 LINE L2 2164 3004 -309 3401 132 13 23 chr1 102883269 102883801 -139780552 - MER1A DNA MER1_type 0 527 1 2327 269 47 53 chr1 102883801 102884101 -139780252 + L2 LINE L2 3004 3304 -9 2294 95 0 0 chr1 102884148 102884442 -139779911 + AluSx SINE Alu 1 294 -18 418 90 149 0 chr1 102885325 102885392 -139778961 - MADE1 DNA Mariner 0 80 4 542 286 125 0 chr1 102887214 102887406 -139776947 + L2 LINE L2 2570 2785 -529 216 160 0 40 chr1 102887409 102887459 -139776894 + (TAA)n Simple_repeat Simple_repeat 3 50 0 479 340 42 0 chr1 102887529 102887673 -139776680 + L2 LINE L2 3122 3271 -1 210 354 0 51 chr1 102887660 102887739 -139776614 - L3b LINE CR1 -1 1582 1508 * 485 207 7 76 chr1 102888137 102888282 -139776071 - MER112 DNA MER1_type -125 135 1 2125 128 34 0 chr1 102888421 102888718 -139775635 - AluSx SINE Alu -5 307 1 815 221 221 26 chr1 102888969 102888994 -139775359 - L2 LINE L2 -1874 1440 1421 2442 80 3 0 chr1 102888994 102889305 -139775048 - AluSp SINE Alu -1 312 1 815 221 221 26 chr1 102889305 102889551 -139774802 - L2 LINE L2 -1893 1421 1116 21 0 0 0 chr1 102889618 102889639 -139774714 + AT_rich Low_complexity Low_complexity 1 21 0 1885 88 0 19 chr1 102889644 102889906 -139774447 + AluSc SINE Alu 44 300 -9 199 292 0 0 chr1 102889906 102889954 -139774399 - L2 LINE L2 -68 3204 3157 505 139 20 40 chr1 102890021 102890122 -139774231 - MER53 DNA DNA 0 189 91 300 289 0 24 chr1 102890133 102890216 -139774137 - L2 LINE L2 -185 3087 3007 180 0 0 0 chr1 102890315 102890335 -139774018 + (TC)n Simple_repeat Simple_repeat 1 20 0 2273 139 3 3 chr1 102890412 102890778 -139773575 - MER47A DNA MER2_type 0 366 1 695 193 28 55 chr1 102891512 102891657 -139772696 - MER70A LTR ERVL -328 144 4 242 251 104 55 chr1 102891750 102891913 -139772440 + MLT1K LTR MaLR 186 356 -232 258 322 137 20 chr1 102892283 102892471 -139771882 + MIR SINE MIR 3 206 -56 293 215 13 13 chr1 102892570 102892649 -139771704 - L1ME LINE L1 -373 5748 5670 2076 107 7 10 chr1 102892650 102892948 -139771405 - AluSx SINE Alu -15 297 1 1207 158 0 5 chr1 102892948 102893132 -139771221 - AluJo SINE Alu -129 183 1 398 234 70 38 chr1 102894143 102894301 -139770052 - L1MEc LINE L1 -6199 197 35 369 257 103 22 chr1 102894828 102894964 -139769389 + L2 LINE L2 3151 3297 -16 180 77 0 0 chr1 102894966 102894992 -139769361 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr1 102895831 102895852 -139768501 + AT_rich Low_complexity Low_complexity 1 21 0 248 247 52 93 chr1 102896053 102896087 -139768266 - L1ME LINE L1 -223 5898 5864 2405 87 0 0 chr1 102896087 102896387 -139767966 + AluSc SINE Alu 2 301 -8 248 247 52 93 chr1 102896387 102896546 -139767807 - L1ME LINE L1 -257 5864 5713 240 163 0 0 chr1 102896592 102896635 -139767718 + GA-rich Low_complexity Low_complexity 4 46 0 369 324 46 18 chr1 102896675 102896894 -139767459 - L1ME LINE L1 -617 5504 5280 1612 160 6 86 chr1 102896945 102897282 -139767071 - AluJo SINE Alu -2 310 1 30 0 0 0 chr1 102897324 102897354 -139766999 + AT_rich Low_complexity Low_complexity 1 30 0 999 168 26 0 chr1 102897612 102897767 -139766586 - FAM SINE Alu -16 159 1 25 0 0 0 chr1 102898165 102898190 -139766163 + AT_rich Low_complexity Low_complexity 1 25 0 2422 83 3 0 chr1 102898230 102898532 -139765821 + AluSg SINE Alu 1 303 -7 761 66 139 0 chr1 102898987 102899109 -139765244 + MER85 DNA T2_type 1 139 0 2312 62 45 0 chr1 102899835 102900125 -139764228 - AluY SINE Alu -8 303 1 239 307 13 13 chr1 102900134 102900209 -139764144 - MIR SINE MIR -114 148 74 412 262 156 8 chr1 102900298 102900420 -139763933 + MIR SINE MIR 2 141 -121 1424 164 0 21 chr1 102900758 102900996 -139763357 - AluJo SINE Alu -31 281 49 205 182 0 0 chr1 102901028 102901061 -139763292 + T-rich Low_complexity Low_complexity 3 35 0 332 314 113 64 chr1 102901889 102902217 -139762136 + L2 LINE L2 2928 3271 -1 280 272 151 83 chr1 102902233 102902498 -139761855 + MLT1H LTR MaLR 251 533 -16 30 27 0 0 chr1 102902718 102902755 -139761598 + AT_rich Low_complexity Low_complexity 1 37 0 302 230 40 70 chr1 102903071 102903171 -139761182 + L2 LINE L2 3212 3308 -5 298 191 223 21 chr1 102904271 102904365 -139759988 - L2 LINE L2 -10 3303 3191 226 332 117 50 chr1 102904570 102904853 -139759500 + L2 LINE L2 2505 2806 -508 408 269 84 8 chr1 102904855 102904974 -139759379 + MIR SINE MIR 29 156 -106 419 340 85 30 chr1 102905092 102905292 -139759061 + MIR SINE MIR 31 241 -21 240 366 76 47 chr1 102905438 102905714 -139758639 + L2 LINE L2 2972 3255 -17 964 178 19 0 chr1 102905877 102906034 -139758319 - AluJb SINE Alu -12 300 141 233 280 227 9 chr1 102906371 102906524 -139757829 - MIR3 SINE MIR -70 192 7 2083 135 0 3 chr1 102906808 102907104 -139757249 - AluSx SINE Alu -17 295 1 950 156 6 28 chr1 102907481 102907660 -139756693 - AluJ SINE Alu 0 312 138 335 41 20 0 chr1 102907728 102907777 -139756576 + (TA)n Simple_repeat Simple_repeat 2 51 0 779 130 8 23 chr1 102907777 102907908 -139756445 - AluJ SINE Alu -172 130 2 203 235 0 20 chr1 102908983 102909034 -139755319 + (CGG)n Simple_repeat Simple_repeat 1 50 0 212 119 0 24 chr1 102909061 102909103 -139755250 + (CGG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr1 102910864 102910893 -139753460 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 102912153 102912175 -139752178 + AT_rich Low_complexity Low_complexity 1 22 0 652 220 165 17 chr1 102912619 102912855 -139751498 - MER5C DNA MER1_type -45 279 9 21 71 0 0 chr1 102913001 102913043 -139751310 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 102913706 102913728 -139750625 + AT_rich Low_complexity Low_complexity 1 22 0 710 245 21 36 chr1 102913758 102913950 -139750403 - MER91B DNA MER1_type -1 189 1 1947 144 20 0 chr1 102914328 102914634 -139749719 - AluSx SINE Alu 0 312 1 25 31 0 0 chr1 102914708 102914740 -139749613 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 102914818 102914841 -139749512 + AT_rich Low_complexity Low_complexity 1 23 0 215 254 99 0 chr1 102914869 102914940 -139749413 - MIR SINE MIR -18 244 167 1732 160 3 7 chr1 102914986 102915268 -139749085 - AluY SINE Alu -30 281 1 21 0 0 0 chr1 102915701 102915722 -139748631 + AT_rich Low_complexity Low_complexity 1 21 0 1858 191 0 0 chr1 102915790 102916093 -139748260 - AluJo SINE Alu -9 303 1 355 252 28 0 chr1 102917784 102917891 -139746462 - MIR SINE MIR 0 262 153 21 82 0 0 chr1 102918097 102918146 -139746207 + AT_rich Low_complexity Low_complexity 1 49 0 471 273 31 16 chr1 102918182 102918310 -139746043 - L2 LINE L2 -2 3311 3182 252 316 0 53 chr1 102918343 102918438 -139745915 - MIR SINE MIR -170 92 3 1022 179 6 0 chr1 102919131 102919304 -139745049 - FAM SINE Alu -1 174 1 2346 94 0 0 chr1 102919622 102919920 -139744433 - AluSx SINE Alu -14 298 1 827 242 0 0 chr1 102920259 102920443 -139743910 + FAM SINE Alu 1 49 0 886 145 0 0 chr1 102920890 102921014 -139743339 + FLAM_C SINE Alu 1 124 -19 1945 238 184 3 chr1 102921093 102921765 -139742588 + LTR50 LTR ERVL 1 794 -1 294 29 0 0 chr1 102925718 102925753 -139738600 + (T)n Simple_repeat Simple_repeat 1 35 0 1784 244 37 32 chr1 102925994 102926221 -139738132 - L1ME3A LINE L1 -72 6098 5874 1862 189 111 24 chr1 102926221 102926680 -139737673 - MLT1D LTR MaLR -4 501 3 1784 244 37 32 chr1 102926680 102926990 -139737363 - L1ME3A LINE L1 -296 5874 5558 23 33 0 0 chr1 102927267 102927297 -139737056 + AT_rich Low_complexity Low_complexity 1 30 0 2573 54 0 13 chr1 102927741 102928055 -139736298 - AluY SINE Alu -1 310 1 497 173 0 0 chr1 102928080 102928155 -139736198 - FAM SINE Alu -54 131 57 1009 162 0 100 chr1 102928224 102928465 -139735888 - MER20 DNA MER1_type 0 219 3 2471 152 89 4 chr1 102928809 102929282 -139735071 - L1MB3 LINE L1 -2 6181 5669 1388 123 37 12 chr1 102929374 102929617 -139734736 - MER6 DNA MER2_type 0 865 617 1891 146 10 3 chr1 102929620 102929908 -139734445 + AluJb SINE Alu 1 290 -22 636 128 0 0 chr1 102929978 102930072 -139734281 + AluJb SINE Alu 213 306 -6 3496 156 55 2 chr1 102930072 102930630 -139733723 - MER6 DNA MER2_type -252 613 21 2153 110 7 3 chr1 102930630 102930931 -139733422 + AluSc SINE Alu 1 302 -7 3496 156 55 2 chr1 102930931 102930954 -139733399 - MER6 DNA MER2_type -844 21 1 417 129 40 5 chr1 102931906 102932045 -139732308 - MER2 DNA MER2_type -142 203 1 320 290 53 23 chr1 102932980 102933111 -139731242 + L2 LINE L2 2601 2735 -579 391 349 54 64 chr1 102933247 102933542 -139730811 + L2 LINE L2 2933 3224 -48 909 213 19 0 chr1 102933732 102933892 -139730461 + FRAM SINE Alu 2 164 -12 2319 92 3 3 chr1 102934077 102934372 -139729981 + AluSq SINE Alu 1 295 -18 1491 152 141 0 chr1 102934532 102934795 -139729558 - AluJo SINE Alu 0 302 3 666 267 165 56 chr1 102934809 102934828 -139729525 - MLT1H1 LTR MaLR -18 537 521 2182 133 3 0 chr1 102934828 102935136 -139729217 + AluJo SINE Alu 1 309 -3 666 267 165 56 chr1 102935136 102935546 -139728807 - MLT1H1 LTR MaLR -34 521 61 2766 32 0 0 chr1 102936249 102936560 -139727793 + AluY SINE Alu 1 311 0 13267 155 102 41 chr1 102936959 102939996 -139724357 + L1M1 LINE L1 17 2928 -4637 1805 112 4 0 chr1 102939997 102940239 -139724114 + AluSx SINE Alu 1 243 -69 2730 97 114 2 chr1 102940239 102940764 -139723589 + L1M1 LINE L1 3041 3624 -3941 212 59 29 0 chr1 102940764 102940798 -139723555 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1859 174 0 0 chr1 102940800 102941087 -139723266 + AluJb SINE Alu 1 287 -25 2661 195 19 7 chr1 102941220 102941835 -139722518 + L1M1 LINE L1 3669 4291 -3274 2598 177 28 0 chr1 102941834 102942370 -139721983 + L1M1 LINE L1 4762 5312 -2253 * 6318 101 21 5 chr1 102942358 102943359 -139720994 + L1MA3 LINE L1 5280 6296 -9 658 220 43 21 chr1 102943614 102943800 -139720553 + L1M1 LINE L1 5380 5569 -1996 238 337 89 20 chr1 102944182 102944283 -139720070 - L2 LINE L2 -49 3223 3116 452 342 89 62 chr1 102944762 102945410 -139718943 + L2 LINE L2 2604 3268 -4 354 251 131 12 chr1 102945492 102945788 -139718565 + MLT1L LTR MaLR 14 380 -235 1173 207 0 5 chr1 102945828 102946041 -139718312 + AluJo SINE Alu 91 302 -10 1326 169 9 0 chr1 102946070 102946283 -139718070 + AluJo SINE Alu 84 298 -14 1747 102 52 3 chr1 102946287 102946592 -139717761 - LTR24C LTR ERV1 -41 594 275 424 190 0 0 chr1 102946599 102946678 -139717675 + L1ME1 LINE L1 5695 5773 -2012 343 257 56 49 chr1 102946708 102946852 -139717501 + L1ME1 LINE L1 6010 6154 -12 357 193 57 23 chr1 102948446 102948529 -139715824 - MLT1I LTR MaLR -6 403 318 1458 178 51 70 chr1 102948529 102948609 -139715744 + MLT1A1 LTR MaLR 1 81 -284 742 48 57 0 chr1 102948609 102948714 -139715639 + HY1 scRNA scRNA 1 111 -1 1458 178 51 70 chr1 102948714 102949003 -139715350 + MLT1A1 LTR MaLR 81 363 -2 3510 121 2 6 chr1 102949078 102949591 -139714762 - MER9 LTR ERVK 0 511 1 1250 183 102 0 chr1 102949646 102949920 -139714433 - MER21B LTR ERV1 -1 862 561 2194 119 10 0 chr1 102950167 102950470 -139713883 - AluSx SINE Alu -6 306 1 871 163 51 51 chr1 102950519 102950813 -139713540 + Charlie2 DNA MER1_type 2337 2630 -232 16735 50 2 1 chr1 102950896 102953795 -139710558 - L1PA5 LINE L1 0 6154 3270 7794 42 2 86 chr1 102953795 102955037 -139709316 + L1PA5 LINE L1 2127 3263 -2883 567 236 99 57 chr1 102955149 102955361 -139708992 - MLT1J2 LTR MaLR -221 229 9 252 108 0 0 chr1 102955543 102955580 -139708773 - LTR49-int LTR ERV1 -392 5939 5903 2194 142 26 16 chr1 102955607 102956031 -139708322 - LTR49-int LTR ERV1 -541 5790 5363 783 194 0 0 chr1 102956040 102956174 -139708179 + AluJo SINE Alu 1 134 -178 27 29 0 0 chr1 102956174 102956208 -139708145 + AT_rich Low_complexity Low_complexity 1 34 0 2932 174 53 18 chr1 102956229 102956883 -139707470 - LTR49-int LTR ERV1 -1014 5317 4641 730 137 0 0 chr1 102956956 102957058 -139707295 - FLAM_C SINE Alu -25 118 17 2843 176 41 60 chr1 102957067 102957155 -139707198 - LTR49-int LTR ERV1 -1693 4638 4550 1573 122 0 9 chr1 102957155 102957384 -139706969 + AluSx SINE Alu 41 267 -45 2843 176 41 60 chr1 102957384 102958102 -139706251 - LTR49-int LTR ERV1 -1781 4550 3847 1012 210 0 36 chr1 102958102 102958315 -139706038 - AluJo SINE Alu -9 303 98 1453 173 4 20 chr1 102958315 102958563 -139705790 - AluJo SINE Alu -68 244 1 1347 151 25 52 chr1 102958569 102958893 -139705460 - LTR49-int LTR ERV1 -3215 3116 2802 214 0 111 0 chr1 102958894 102958930 -139705423 + T-rich Low_complexity Low_complexity 2 41 0 350 102 34 0 chr1 102958931 102958990 -139705363 - LTR49-int LTR ERV1 -3530 2801 2741 265 146 0 0 chr1 102959022 102959070 -139705283 + MER54A LTR ERVL 854 901 0 2658 188 22 81 chr1 102959070 102959548 -139704805 - LTR49-int LTR ERV1 -3662 3413 2909 2175 62 0 7 chr1 102959548 102959823 -139704530 + AluY SINE Alu 33 305 -6 2658 188 22 81 chr1 102959823 102960372 -139703981 - LTR49-int LTR ERV1 -4166 2909 1734 283 324 0 0 chr1 102960375 102960446 -139703907 + (CA)n Simple_repeat Simple_repeat 2 72 0 1692 183 14 7 chr1 102960447 102960731 -139703622 - AluJb SINE Alu -26 286 1 1655 116 55 74 chr1 102960731 102961110 -139703243 - LTR49-int LTR ERV1 -4589 1742 1371 466 140 0 21 chr1 102961254 102961347 -139703006 - LTR49-int LTR ERV1 -4949 1382 1292 706 164 29 88 chr1 102961347 102961518 -139702835 - LTR8A LTR ERV1 0 727 567 842 227 57 0 chr1 102961518 102961712 -139702641 - LTR49-int LTR ERV1 -4281 2050 1846 1625 173 63 92 chr1 102961716 102962207 -139702146 - LTR8A LTR ERV1 -144 583 107 3139 159 48 78 chr1 102962211 102962738 -139701615 - LTR49-int LTR ERV1 -5108 1223 682 1842 130 109 62 chr1 102962738 102963170 -139701183 - LTR47A LTR ERVL 0 452 1 3139 159 48 78 chr1 102963170 102963323 -139701030 - LTR49-int LTR ERV1 -5649 682 566 1613 152 33 26 chr1 102963323 102963625 -139700728 + AluJo SINE Alu 1 304 -8 3139 159 48 78 chr1 102963625 102963708 -139700645 - LTR49-int LTR ERV1 -5765 566 482 1100 109 89 45 chr1 102963710 102964065 -139700288 + MER4B LTR ERV1 2 457 -153 2040 142 19 24 chr1 102964066 102964440 -139699913 + THE1C LTR MaLR 4 375 0 2773 105 0 0 chr1 102964440 102964841 -139699512 + THE1C-int LTR MaLR 1 401 -1179 41642 46 2 0 chr1 102964856 102970997 -139693356 - L1PA4 LINE L1 0 6155 7 5647 148 22 13 chr1 102971077 102972059 -139692294 + THE1C-int LTR MaLR 427 1417 -163 561 184 9 35 chr1 102972059 102972106 -139692247 - AluJb SINE Alu -131 181 134 180 0 0 0 chr1 102972106 102972126 -139692227 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 561 184 9 35 chr1 102972126 102972192 -139692161 - AluJb SINE Alu -178 134 71 525 152 20 10 chr1 102972192 102972291 -139692062 - LTR49-int LTR ERV1 -950 5381 5282 541 171 0 0 chr1 102972291 102972373 -139691980 - AluS SINE Alu -228 84 3 3520 206 37 66 chr1 102972384 102972672 -139691681 - LTR49-int LTR ERV1 -2643 2480 2185 1554 201 20 10 chr1 102972672 102972976 -139691377 - AluJo SINE Alu -5 307 1 3520 206 37 66 chr1 102972976 102973998 -139690355 - LTR49-int LTR ERV1 -2938 2185 1207 761 214 121 18 chr1 102973999 102974223 -139690130 - MER34C LTR ERV1 -179 406 160 1440 213 53 74 chr1 102974223 102974605 -139689748 - LTR49-int LTR ERV1 -3688 2643 2255 2243 161 160 33 chr1 102974605 102974974 -139689379 - LTR18B LTR ERVL 0 614 152 2247 122 0 0 chr1 102974974 102975262 -139689091 - AluSc SINE Alu -21 288 1 2243 161 160 33 chr1 102975262 102975437 -139688916 - LTR18B LTR ERVL -462 152 1 1440 213 53 74 chr1 102975437 102975690 -139688663 - LTR49-int LTR ERV1 -4076 2255 754 956 153 0 25 chr1 102975808 102975965 -139688388 - AluJb SINE Alu -5 307 155 4571 121 27 31 chr1 102975970 102976747 -139687606 - MER4E LTR ERV1 -5 774 1 867 144 0 0 chr1 102976772 102976904 -139687449 - FLAM_C SINE Alu 0 133 2 22 35 0 0 chr1 102978043 102978072 -139686281 + AT_rich Low_complexity Low_complexity 1 29 0 274 231 0 46 chr1 102978136 102978201 -139686152 - MIR SINE MIR -108 154 93 233 290 0 0 chr1 102978186 102978248 -139686105 - MIR SINE MIR 0 262 201 * 530 262 134 0 chr1 102978493 102978657 -139685696 + MIR SINE MIR 12 197 -65 226 262 71 50 chr1 102978690 102978831 -139685522 + L1ME LINE L1 40 183 -5887 210 234 0 31 chr1 102978847 102978911 -139685442 + T-rich Low_complexity Low_complexity 4 65 0 1468 166 31 28 chr1 102979274 102979594 -139684759 + THE1C LTR MaLR 55 375 0 5478 137 19 32 chr1 102979597 102981016 -139683337 + L1PB2 LINE L1 4730 6150 -1 2388 45 28 0 chr1 102981258 102981546 -139682807 + AluY SINE Alu 1 296 -15 1214 250 35 10 chr1 102981988 102982384 -139681969 - L1MB7 LINE L1 0 6184 5779 448 186 41 10 chr1 102982393 102982490 -139681863 - MLT1J2 LTR MaLR -306 144 45 2188 135 0 6 chr1 102982555 102982867 -139681486 + AluSx SINE Alu 2 311 -1 2101 112 0 63 chr1 102982875 102983206 -139681147 + AluSg SINE Alu 1 310 0 367 119 0 0 chr1 102983308 102983367 -139680986 - MLT1D LTR MaLR 0 505 447 27 62 0 0 chr1 102983390 102983438 -139680915 + AT_rich Low_complexity Low_complexity 1 48 0 * 315 210 66 0 chr1 102983412 102983579 -139680774 + (TA)n Simple_repeat Simple_repeat 1 178 0 2202 174 33 57 chr1 102983580 102984039 -139680314 - MLT1D LTR MaLR -57 448 1 2315 229 99 94 chr1 102984042 102984378 -139679975 + L1ME1 LINE L1 128 461 -5935 896 118 0 22 chr1 102984378 102984514 -139679839 - FLAM_C SINE Alu 0 133 1 2315 229 99 94 chr1 102984514 102984525 -139679828 + L1ME1 LINE L1 461 470 -5926 1949 94 7 14 chr1 102984525 102984802 -139679551 - AluY SINE Alu -2 309 35 2315 229 99 94 chr1 102984802 102985435 -139678918 + L1ME1 LINE L1 470 1304 -5092 2240 91 0 10 chr1 102985435 102985733 -139678620 - AluY SINE Alu -16 295 1 2315 229 99 94 chr1 102985733 102986102 -139678251 + L1ME1 LINE L1 1304 1670 -4726 711 227 7 13 chr1 102986125 102986275 -139678078 + MLT1A1 LTR MaLR 171 319 -46 198 0 0 0 chr1 102986287 102986309 -139678044 + (GA)n Simple_repeat Simple_repeat 1 22 0 1877 169 0 7 chr1 102986348 102986649 -139677704 + AluSx SINE Alu 1 299 -13 2430 53 36 3 chr1 102986651 102986952 -139677401 + AluY SINE Alu 1 311 0 887 160 31 198 chr1 102986970 102987130 -139677223 + L1ME1 LINE L1 1703 1888 -4508 632 242 0 8 chr1 102987130 102987262 -139677091 + FLAM_A SINE Alu 1 131 -2 1376 149 65 11 chr1 102987269 102987531 -139676822 + L1MB8 LINE L1 5885 6160 -18 1782 176 0 30 chr1 102987537 102987839 -139676514 - AluJb SINE Alu -17 295 3 887 160 31 198 chr1 102987839 102987911 -139676442 + L1ME1 LINE L1 1900 1855 -4541 1578 191 3 17 chr1 102987911 102988204 -139676149 + AluJo SINE Alu 1 289 -23 887 160 31 198 chr1 102988204 102988374 -139675979 + L1ME1 LINE L1 1854 2051 -4345 3556 183 42 15 chr1 102988377 102989115 -139675238 + L1MB8 LINE L1 5409 6166 -12 332 103 0 86 chr1 102989124 102989146 -139675207 + AluJo SINE Alu 84 106 -196 5245 206 66 91 chr1 102989146 102990946 -139673407 + MER52A LTR ERV1 1 1755 0 332 103 0 86 chr1 102990946 102990981 -139673372 + AluJo SINE Alu 106 136 -166 832 248 0 0 chr1 102990981 102991138 -139673215 + AluJo SINE Alu 137 293 -9 7731 233 59 51 chr1 102991155 102991628 -139672725 + L1ME1 LINE L1 2034 2502 -3713 1580 189 47 10 chr1 102991628 102991924 -139672429 + AluJb SINE Alu 3 309 -3 7731 233 59 51 chr1 102991924 102993319 -139671034 + L1ME1 LINE L1 2502 3885 -2330 441 0 0 0 chr1 102993319 102993368 -139670985 + (CA)n Simple_repeat Simple_repeat 2 50 0 7731 233 59 51 chr1 102993368 102993582 -139670771 + L1ME1 LINE L1 3885 4096 -2119 1700 163 7 31 chr1 102993582 102993871 -139670482 - AluJb SINE Alu -21 291 10 7731 233 59 51 chr1 102993871 102994156 -139670197 + L1ME1 LINE L1 4096 4377 -1838 1906 155 7 0 chr1 102994156 102994440 -139669913 - AluSx SINE Alu -24 288 3 7731 233 59 51 chr1 102994440 102995244 -139669109 + L1ME1 LINE L1 4377 5194 -1021 1439 296 74 28 chr1 102995248 102995819 -139668534 - MLT1E LTR MaLR 0 593 1 1498 199 44 51 chr1 102995861 102995985 -139668368 + L1ME1 LINE L1 5268 5391 -842 845 190 11 35 chr1 102995985 102996159 -139668194 + FAM SINE Alu 1 170 -5 1498 199 44 51 chr1 102996159 102996442 -139667911 + L1ME1 LINE L1 5391 5682 -551 5092 177 21 11 chr1 102996443 102997617 -139666736 - MER52A LTR ERV1 0 1755 903 233 211 0 0 chr1 102997620 102997658 -139666695 - MER52A LTR ERV1 -743 1012 975 3881 176 189 34 chr1 102997659 102998615 -139665738 - MER52A LTR ERV1 -650 1105 1 2315 174 40 32 chr1 102998645 102999140 -139665213 - MLT1D LTR MaLR 0 505 7 342 176 0 137 chr1 102999147 102999200 -139665153 + L1ME1 LINE L1 5703 5737 -691 1812 186 3 0 chr1 102999200 102999496 -139664857 - AluJb SINE Alu -15 297 1 342 176 0 137 chr1 102999496 102999544 -139664809 + L1ME1 LINE L1 5737 5790 -638 1286 247 94 18 chr1 102999612 103000050 -139664303 + L1ME1 LINE L1 5760 6230 -5 1854 167 0 7 chr1 103000413 103000712 -139663641 - AluJb SINE Alu -15 297 1 2672 251 96 20 chr1 103001281 103002339 -139662014 - L1ME3A LINE L1 -14 6156 5019 1755 181 3 13 chr1 103002723 103003033 -139661320 - AluJo SINE Alu -5 307 1 205 250 0 19 chr1 103003602 103003654 -139660699 - MER5B DNA MER1_type -78 100 50 544 86 343 7 chr1 103004128 103004268 -139660085 - MER53 DNA DNA -2 187 1 933 179 19 118 chr1 103004514 103004777 -139659576 + AluJo SINE Alu 64 300 -12 3418 83 7 0 chr1 103005084 103005518 -139658835 - LTR3b LTR ERVK 0 437 1 482 230 88 0 chr1 103005775 103005888 -139658465 + MER63 DNA MER1_type 1 749 -87 266 250 125 0 chr1 103005891 103005955 -139658398 + MER63 DNA MER1_type 980 1051 -11 250 229 0 0 chr1 103006455 103006503 -139657850 + CT-rich Low_complexity Low_complexity 2 49 0 28 29 0 0 chr1 103007469 103007504 -139656849 + AT_rich Low_complexity Low_complexity 1 35 0 654 224 0 0 chr1 103007504 103007620 -139656733 - FLAM_C SINE Alu -26 117 2 21 0 0 0 chr1 103008081 103008102 -139656251 + AT_rich Low_complexity Low_complexity 1 21 0 1673 148 39 43 chr1 103008157 103008279 -139656074 + AluJb SINE Alu 1 122 -190 245 27 54 0 chr1 103008279 103008316 -139656037 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1673 148 39 43 chr1 103008316 103008498 -139655855 + AluJb SINE Alu 122 304 -8 1785 155 13 13 chr1 103008696 103009005 -139655348 + AluJb SINE Alu 3 311 -1 2297 101 0 0 chr1 103009135 103009431 -139654922 + AluSq SINE Alu 1 296 -17 29 0 0 0 chr1 103010384 103010413 -139653940 + AT_rich Low_complexity Low_complexity 1 29 0 200 206 32 32 chr1 103010913 103010976 -139653377 + (CCCCG)n Simple_repeat Simple_repeat 4 66 0 279 226 36 12 chr1 103011965 103012049 -139652304 + CT-rich Low_complexity Low_complexity 4 89 0 338 249 98 52 chr1 103012449 103012622 -139651731 - L3 LINE CR1 -12 1565 1385 34 0 0 0 chr1 103012777 103012811 -139651542 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 103014542 103014563 -139649790 + AT_rich Low_complexity Low_complexity 1 21 0 2125 106 3 0 chr1 103014563 103014847 -139649506 - AluSg SINE Alu -25 285 1 232 233 137 0 chr1 103014866 103014939 -139649414 + L3 LINE CR1 444 526 -1051 317 254 109 0 chr1 103015385 103015495 -139648858 + L3 LINE CR1 952 1073 -504 436 204 32 0 chr1 103015504 103015597 -139648756 - FLAM_A SINE Alu -21 121 26 215 306 0 0 chr1 103016708 103016770 -139647583 - L2 LINE L2 -5 3308 3247 219 192 151 14 chr1 103017009 103017082 -139647271 + L2 LINE L2 3222 3304 -9 300 70 0 0 chr1 103017212 103017255 -139647098 + (TG)n Simple_repeat Simple_repeat 2 44 0 27 73 0 0 chr1 103017455 103017510 -139646843 + AT_rich Low_complexity Low_complexity 1 55 0 834 148 117 141 chr1 103017563 103017800 -139646553 - MER2 DNA MER2_type -2 343 102 2258 93 0 0 chr1 103017800 103018125 -139646228 - AluY SINE Alu 0 311 1 1669 159 16 0 chr1 103018135 103018386 -139645967 - AluJo SINE Alu -57 255 1 834 148 117 141 chr1 103018386 103018428 -139645925 - MER2 DNA MER2_type -252 93 60 654 221 16 0 chr1 103018885 103019007 -139645346 + FLAM_A SINE Alu 2 125 -8 1617 148 23 53 chr1 103019385 103019688 -139644665 + AluJb SINE Alu 1 294 -18 22 56 0 0 chr1 103019872 103019908 -139644445 + AT_rich Low_complexity Low_complexity 1 36 0 2365 89 10 0 chr1 103022069 103022373 -139641980 - AluSx SINE Alu 0 307 1 330 267 125 75 chr1 103022515 103022610 -139641743 - L1ME4a LINE L1 -128 5993 5904 2265 101 0 3 chr1 103022610 103022906 -139641447 - AluSg SINE Alu -15 295 1 330 267 125 75 chr1 103022906 103023050 -139641303 - L1ME4a LINE L1 -217 5904 5742 1125 191 25 8 chr1 103023057 103023292 -139641061 - MIR SINE MIR -10 252 14 417 205 0 77 chr1 103024023 103024140 -139640213 - MIR SINE MIR -67 195 88 272 353 22 0 chr1 103025056 103025192 -139639161 + L2 LINE L2 2652 2790 -524 560 214 104 19 chr1 103025231 103025385 -139638968 + MIR SINE MIR 3 169 -93 363 282 45 65 chr1 103025435 103025680 -139638673 + L2 LINE L2 2831 3070 -243 839 142 137 33 chr1 103025705 103025888 -139638465 + MER3 DNA MER1_type 3 204 -5 392 211 18 78 chr1 103025946 103026112 -139638241 + L2 LINE L2 3158 3313 0 1697 160 38 7 chr1 103026214 103026507 -139637846 - AluJo SINE Alu -10 302 1 180 77 0 0 chr1 103027228 103027254 -139637099 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 605 228 57 44 chr1 103028591 103028819 -139635534 - MIR SINE MIR -15 247 17 1592 165 95 0 chr1 103029337 103029610 -139634743 + AluJb SINE Alu 1 299 -13 297 219 114 41 chr1 103029733 103029856 -139634497 + MIR3 SINE MIR 39 170 -38 273 235 107 54 chr1 103029921 103030070 -139634283 + MIR SINE MIR 106 262 0 442 268 79 18 chr1 103030576 103030740 -139633613 + MIR SINE MIR 35 208 -54 590 239 14 14 chr1 103031485 103031623 -139632730 - MER91A DNA MER1_type -20 176 39 2367 90 7 0 chr1 103031796 103032106 -139632247 - AluSp SINE Alu -1 312 1 582 315 29 48 chr1 103033098 103033517 -139630836 - L2 LINE L2 -527 2787 2377 1006 173 49 0 chr1 103033606 103033768 -139630585 + AluJb SINE Alu 136 305 -7 472 341 43 37 chr1 103033793 103034168 -139630185 - L2 LINE L2 -1136 2178 1802 270 0 0 0 chr1 103035084 103035114 -139629239 + (CA)n Simple_repeat Simple_repeat 2 31 0 306 280 53 0 chr1 103035149 103035224 -139629129 - L2 LINE L2 -58 3214 3136 1535 177 10 48 chr1 103035675 103035969 -139628384 + AluJo SINE Alu 1 283 -29 181 139 139 0 chr1 103036311 103036347 -139628006 - L2 LINE L2 -4 3309 3269 1822 154 17 7 chr1 103036352 103036651 -139627702 - AluJb SINE Alu -10 302 1 418 205 5 0 chr1 103036653 103036764 -139627589 - L1ME2 LINE L1 -181 5981 5869 203 59 0 29 chr1 103037215 103037249 -139627104 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2293 80 3 0 chr1 103037269 103037557 -139626796 - AluY SINE Alu -22 289 1 275 167 53 83 chr1 103037571 103037703 -139626650 - HAL1 LINE L1 -1398 1109 982 258 0 0 0 chr1 103037731 103037762 -139626591 + L1MA8 LINE L1 4920 4950 -1196 861 156 7 7 chr1 103037762 103037897 -139626456 - AluJo SINE Alu -177 135 1 2563 156 30 6 chr1 103037897 103038175 -139626178 + L1MA8 LINE L1 4941 5211 -1080 1114 143 131 78 chr1 103038175 103038460 -139625893 + MER44D DNA MER2_type 1 269 -2222 1751 144 53 14 chr1 103038460 103038744 -139625609 + AluSx SINE Alu 1 295 -17 1114 143 131 78 chr1 103038744 103038779 -139625574 + MER44D DNA MER2_type 269 608 -1 2563 156 30 6 chr1 103038779 103039280 -139625073 + L1MA8 LINE L1 5211 5736 -555 1308 222 10 70 chr1 103039280 103039352 -139625001 + MLT1A1 LTR MaLR 1 76 -289 1312 140 35 18 chr1 103039352 103039409 -139624944 - MER46A DNA MER2_type -2499 232 177 333 0 0 0 chr1 103039409 103039446 -139624907 + (TG)n Simple_repeat Simple_repeat 2 38 0 1312 140 35 18 chr1 103039446 103039616 -139624737 - MER46A DNA MER2_type -2554 177 1 1308 222 10 70 chr1 103039616 103039931 -139624422 + MLT1A1 LTR MaLR 76 365 0 462 177 31 0 chr1 103039931 103040027 -139624326 + L1MA8 LINE L1 5732 5830 -461 252 128 0 0 chr1 103040029 103040068 -139624285 + MER4E LTR ERV1 654 692 -74 1718 146 35 0 chr1 103040068 103040383 -139623970 + L1MA8 LINE L1 5815 6140 -151 22 70 0 0 chr1 103040387 103040430 -139623923 + AT_rich Low_complexity Low_complexity 1 43 0 423 198 0 18 chr1 103040445 103040556 -139623797 - HAL1 LINE L1 -1553 954 846 281 179 115 0 chr1 103041118 103041196 -139623157 - MLT1L LTR MaLR -508 107 21 5725 146 122 113 chr1 103041748 103042296 -139622057 - L1MC3 LINE L1 0 7785 7243 252 283 28 9 chr1 103042296 103042402 -139621951 - MLT1F1 LTR MaLR -436 131 24 5725 146 122 113 chr1 103042402 103042869 -139621484 - L1MC3 LINE L1 -542 7243 6781 248 185 92 15 chr1 103042869 103042934 -139621419 - Tigger5 DNA MER2_type -1 2322 2253 5725 146 122 113 chr1 103042934 103043499 -139620854 - L1MC3 LINE L1 -1004 6781 6020 1169 175 57 0 chr1 103043501 103043730 -139620623 + L1MB3 LINE L1 5445 5686 -497 678 292 130 35 chr1 103043864 103044549 -139619804 - L1MEd LINE L1 -4947 1172 423 7083 55 7 3 chr1 103044672 103046334 -139618019 - L1PA6 LINE L1 -1 6153 4489 2110 124 3 0 chr1 103046341 103046624 -139617729 - AluSx SINE Alu -28 284 1 2564 156 19 50 chr1 103046625 103047096 -139617257 + L1MB3 LINE L1 5662 6146 -37 1027 188 0 0 chr1 103047096 103047261 -139617092 + FAM SINE Alu 1 165 -10 597 207 9 0 chr1 103047265 103047376 -139616977 + FLAM_A SINE Alu 5 116 -17 2564 156 19 50 chr1 103047376 103047436 -139616917 + L1MB3 LINE L1 6149 6181 -2 300 221 147 0 chr1 103047449 103047517 -139616836 - L1MC1 LINE L1 -300 6033 5956 2990 169 38 42 chr1 103047520 103047895 -139616458 - L1MB8 LINE L1 -126 6052 5680 1988 162 0 0 chr1 103047895 103048198 -139616155 - AluJb SINE Alu -9 303 1 2990 169 38 42 chr1 103048198 103048537 -139615816 - L1MB8 LINE L1 -498 5680 5341 3977 59 0 6 chr1 103048553 103049059 -139615294 - L1PA6 LINE L1 -1 6153 5651 1400 166 62 39 chr1 103049197 103049456 -139614897 + AluJo SINE Alu 42 306 -6 1824 171 20 0 chr1 103049597 103049895 -139614458 - AluJo SINE Alu -8 304 1 2319 97 0 0 chr1 103050058 103050357 -139613996 + AluSx SINE Alu 1 299 -13 1057 155 75 31 chr1 103050562 103050788 -139613565 - MER46A DNA MER2_type 0 236 1 1919 157 0 3 chr1 103050879 103051184 -139613169 + AluJo SINE Alu 3 306 -6 440 255 38 57 chr1 103051492 103051649 -139612704 + MER5A DNA MER1_type 36 189 0 373 270 43 26 chr1 103051810 103051925 -139612428 - MIR SINE MIR -143 119 3 2403 100 0 0 chr1 103051998 103052309 -139612044 + AluY SINE Alu 1 311 0 286 321 64 0 chr1 103052771 103052880 -139611473 - MIR SINE MIR -29 233 118 193 322 68 0 chr1 103053009 103053068 -139611285 - L2 LINE L2 -9 3263 3201 961 262 117 19 chr1 103053146 103053455 -139610898 - LTR33 LTR ERVL 0 521 151 2093 102 7 0 chr1 103053455 103053730 -139610623 + AluSx SINE Alu 26 302 -10 961 262 117 19 chr1 103053730 103053882 -139610471 - LTR33 LTR ERVL -370 151 15 231 189 176 40 chr1 103054064 103054138 -139610215 - MER5B DNA MER1_type -66 112 29 213 301 54 32 chr1 103054163 103054256 -139610097 - L2 LINE L2 -423 2891 2797 35 0 0 0 chr1 103054702 103054737 -139609616 + AT_rich Low_complexity Low_complexity 1 35 0 1665 144 70 21 chr1 103054743 103055028 -139609325 + AluJb SINE Alu 1 299 -13 431 281 97 56 chr1 103055380 103055576 -139608777 - L1 LINE L1 -1807 4339 4136 339 264 91 9 chr1 103055780 103055890 -139608463 + MIR SINE MIR 111 229 -33 720 260 36 10 chr1 103056351 103056543 -139607810 - MIR SINE MIR -64 198 2 553 354 23 0 chr1 103056545 103056720 -139607633 - L2 LINE L2 -590 2724 2546 470 199 168 12 chr1 103058161 103058322 -139606031 + L1MC4 LINE L1 6468 6653 -1389 6712 65 156 31 chr1 103058494 103059619 -139604734 - MER11A LTR ERVK 0 1266 1 273 202 172 50 chr1 103059846 103059945 -139604408 + MIR SINE MIR 96 206 -56 2076 58 106 7 chr1 103060054 103060329 -139604024 - AluY SINE Alu -9 302 1 1974 122 3 11 chr1 103061345 103061662 -139602691 + AluJb SINE Alu 1 315 0 24 53 0 0 chr1 103061876 103061914 -139602439 + AT_rich Low_complexity Low_complexity 1 38 0 1786 149 29 29 chr1 103062078 103062216 -139602137 + AluJb SINE Alu 1 138 -174 2456 57 3 0 chr1 103062216 103062514 -139601839 + AluY SINE Alu 12 310 -1 1786 149 29 29 chr1 103062514 103062683 -139601670 + AluJb SINE Alu 137 308 -4 343 273 165 8 chr1 103063380 103063408 -139600945 + MIR3 SINE MIR 60 82 -126 2235 101 0 0 chr1 103063408 103063694 -139600659 - AluSg SINE Alu -24 286 1 343 273 165 8 chr1 103063694 103063786 -139600567 + MIR3 SINE MIR 82 199 -9 1933 151 16 7 chr1 103064341 103064645 -139599708 + AluJo SINE Alu 3 309 -3 27 29 0 0 chr1 103064858 103064892 -139599461 + AT_rich Low_complexity Low_complexity 1 34 0 222 269 108 90 chr1 103065128 103065171 -139599182 - MIR SINE MIR -27 235 194 2226 95 0 10 chr1 103065171 103065465 -139598888 - AluSg SINE Alu -19 291 1 222 269 108 90 chr1 103065465 103065588 -139598765 - MIR SINE MIR -68 194 66 413 250 19 10 chr1 103065948 103066052 -139598301 - MIR SINE MIR -51 211 107 1821 267 127 9 chr1 103066099 103066680 -139597673 + L2 LINE L2 1372 2021 -1293 1728 291 130 64 chr1 103067172 103067730 -139596623 + L2 LINE L2 2007 2527 -787 212 86 29 0 chr1 103067730 103067765 -139596588 + (TG)n Simple_repeat Simple_repeat 2 37 0 1728 291 130 64 chr1 103067765 103067798 -139596555 + L2 LINE L2 2527 2556 -758 761 164 0 8 chr1 103067798 103067920 -139596433 - 5S rRNA rRNA 0 121 1 1728 291 130 64 chr1 103067920 103068201 -139596152 + L2 LINE L2 2556 2938 -376 1665 264 94 63 chr1 103068258 103069085 -139595268 - L2 LINE L2 -1782 1532 680 21 36 0 0 chr1 103069090 103069118 -139595235 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 103069626 103069654 -139594699 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 103069841 103069876 -139594477 + AT_rich Low_complexity Low_complexity 1 35 0 1709 147 14 34 chr1 103070419 103070712 -139593641 - AluJo SINE Alu -25 287 1 866 163 0 69 chr1 103070853 103071013 -139593340 - FRAM SINE Alu -19 157 9 334 179 0 0 chr1 103071040 103071096 -139593257 - AluJ/FLAM SINE Alu -238 64 9 27 73 0 0 chr1 103071357 103071412 -139592941 + AT_rich Low_complexity Low_complexity 1 55 0 444 221 59 15 chr1 103071865 103072001 -139592352 + Charlie7 DNA MER1_type 36 177 -2435 570 165 16 30 chr1 103072033 103072286 -139592067 + AluJo SINE Alu 1 311 -1 1353 169 0 0 chr1 103072482 103072683 -139591670 + AluJb SINE Alu 34 234 -78 532 145 0 0 chr1 103072691 103072774 -139591579 + FRAM SINE Alu 22 104 -72 2301 138 82 17 chr1 103072823 103073285 -139591068 - L1MB3 LINE L1 -1 6182 5691 2053 261 49 31 chr1 103073370 103074018 -139590335 - MER21B LTR ERV1 -61 802 143 2450 98 22 27 chr1 103074169 103074535 -139589818 - THE1B LTR MaLR 0 364 1 1422 225 276 30 chr1 103074550 103075391 -139588962 + Charlie7 DNA MER1_type 910 1957 -655 1002 164 80 177 chr1 103075390 103075724 -139588629 - MLT2D LTR ERVL -6 408 128 * 1146 247 40 24 chr1 103075724 103075882 -139588471 - AluJo SINE Alu -1 301 134 1621 190 18 11 chr1 103075882 103076161 -139588192 - AluJb SINE Alu -21 291 11 1146 247 40 24 chr1 103076161 103076298 -139588055 - AluJo SINE Alu -168 134 1 1002 164 80 177 chr1 103076298 103076415 -139587938 - MLT2D LTR ERVL -286 128 1 1168 198 97 74 chr1 103076418 103076438 -139587915 + Charlie7 DNA MER1_type 1974 1992 -620 2303 72 3 10 chr1 103076438 103076729 -139587624 - AluY SINE Alu -22 289 1 1168 198 97 74 chr1 103076729 103077099 -139587254 + Charlie7 DNA MER1_type 1992 2386 -226 2325 97 0 0 chr1 103077099 103077387 -139586966 - AluSx SINE Alu -24 288 1 1168 198 97 74 chr1 103077387 103077615 -139586738 + Charlie7 DNA MER1_type 2386 2607 -5 204 182 30 30 chr1 103077728 103077794 -139586559 + T-rich Low_complexity Low_complexity 4 69 0 362 297 52 32 chr1 103078268 103078423 -139585930 - MIR SINE MIR -68 194 37 310 262 39 29 chr1 103078422 103078525 -139585828 - L2 LINE L2 -1 3271 3168 * 265 279 0 15 chr1 103079917 103079985 -139584368 + GA-rich Low_complexity Low_complexity 1 67 0 22 35 0 0 chr1 103080544 103080573 -139583780 + AT_rich Low_complexity Low_complexity 1 29 0 1982 145 128 27 chr1 103080744 103081157 -139583196 - MSTB2 LTR MaLR 0 457 3 452 282 124 73 chr1 103081274 103081796 -139582557 + L1ME4a LINE L1 5568 6116 -5 29 47 0 0 chr1 103081840 103081883 -139582470 + AT_rich Low_complexity Low_complexity 1 43 0 2286 100 106 0 chr1 103082558 103082897 -139581456 - THE1C LTR MaLR 0 375 1 1049 59 0 0 chr1 103083850 103083986 -139580367 + THE1A LTR MaLR 220 355 0 1447 181 152 6 chr1 103084057 103084575 -139579778 - L1M2 LINE L1 -748 5564 4949 1191 90 0 30 chr1 103084575 103084682 -139579671 - AluSq SINE Alu -9 304 202 4366 44 53 4 chr1 103084682 103085245 -139579108 - LTR10C LTR ERV1 0 591 1 1566 101 0 0 chr1 103085245 103085444 -139578909 - AluSg SINE Alu -111 199 1 1191 90 0 30 chr1 103085245 103085304 -139579049 - AluSq SINE Alu -111 202 143 30 59 0 0 chr1 103085559 103085610 -139578743 + AT_rich Low_complexity Low_complexity 1 51 0 468 0 0 0 chr1 103086524 103086576 -139577777 + (CA)n Simple_repeat Simple_repeat 2 53 0 441 81 0 0 chr1 103086576 103086638 -139577715 + (TC)n Simple_repeat Simple_repeat 1 62 0 2094 130 0 0 chr1 103087116 103087416 -139576937 - AluSx SINE Alu -12 300 1 23 0 0 0 chr1 103087419 103087442 -139576911 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 103087566 103087589 -139576764 + AT_rich Low_complexity Low_complexity 1 23 0 1778 161 7 7 chr1 103087681 103087967 -139576386 + AluSx SINE Alu 1 286 -26 914 277 213 0 chr1 103088363 103088659 -139575694 - MLT1K LTR MaLR 0 588 230 233 242 63 63 chr1 103088744 103088839 -139575514 - MLT1I LTR MaLR 0 409 315 42291 36 25 3 chr1 103089215 103091299 -139573054 + L1PA3 LINE L1 4 2042 -4113 2817 7 0 0 chr1 103091299 103091603 -139572750 + AluYa5 SINE Alu 1 304 -7 42291 36 25 3 chr1 103091603 103095542 -139568811 + L1PA3 LINE L1 2042 6155 0 585 40 0 13 chr1 103095889 103095964 -139568389 - tRNA-Cys-TGC tRNA tRNA -1 74 1 1235 108 70 16 chr1 103096148 103096333 -139568020 + AluSq SINE Alu 1 195 -118 1780 142 3 21 chr1 103096601 103096925 -139567428 - AluSx SINE Alu 0 353 35 896 178 0 18 chr1 103096936 103097105 -139567248 - FRAM SINE Alu 0 166 1 528 228 20 0 chr1 103097181 103097282 -139567071 - MER58A DNA MER1_type 0 141 39 440 277 163 6 chr1 103097477 103097643 -139566710 + MIR SINE MIR 59 250 -12 21 36 0 0 chr1 103098042 103098070 -139566283 + AT_rich Low_complexity Low_complexity 1 28 0 1114 150 60 17 chr1 103098309 103098542 -139565811 - L1MB7 LINE L1 -8 6176 5934 190 324 56 47 chr1 103098835 103099048 -139565305 + L2 LINE L2 2809 3023 -249 236 216 196 20 chr1 103099160 103099262 -139565091 - Charlie7 DNA MER1_type 0 2612 2493 1466 140 17 30 chr1 103099292 103099527 -139564826 + AluJo SINE Alu 11 242 -70 290 296 172 11 chr1 103099684 103099870 -139564483 + L2 LINE L2 3098 3313 0 807 204 251 12 chr1 103099982 103100237 -139564116 - MER5C DNA MER1_type 0 324 9 498 211 124 87 chr1 103100249 103100384 -139563969 - MIR SINE MIR -50 212 84 1939 117 36 0 chr1 103100384 103100658 -139563695 + AluSx SINE Alu 1 284 -28 423 38 0 0 chr1 103100660 103100713 -139563640 + (CCAA)n Simple_repeat Simple_repeat 2 54 0 498 211 124 87 chr1 103100713 103100759 -139563594 - MIR SINE MIR -178 84 21 260 276 95 29 chr1 103100861 103100966 -139563387 + L3b LINE CR1 1202 1313 -270 1225 187 113 20 chr1 103101090 103101390 -139562963 + MER2 DNA MER2_type 18 345 0 42 82 0 0 chr1 103101777 103101875 -139562478 + AT_rich Low_complexity Low_complexity 1 98 0 1370 221 64 16 chr1 103103284 103103596 -139560757 + MER58B DNA MER1_type 7 333 -8 215 95 48 0 chr1 103103809 103103851 -139560502 + T-rich Low_complexity Low_complexity 2 45 0 186 43 0 0 chr1 103104193 103104216 -139560137 + (T)n Simple_repeat Simple_repeat 1 23 0 357 308 0 0 chr1 103104342 103104446 -139559907 + MIR3 SINE MIR 102 205 -3 223 389 56 0 chr1 103105435 103105507 -139558846 - L2 LINE L2 -61 3211 3136 302 279 61 7 chr1 103105581 103105728 -139558625 + HAL1 LINE L1 1910 2064 -443 491 320 76 26 chr1 103105882 103106185 -139558168 - MLT1L LTR MaLR -95 520 203 3460 266 88 41 chr1 103107101 103108604 -139555749 + HAL1 LINE L1 574 2148 -359 294 324 19 0 chr1 103108628 103108733 -139555620 + L1MEd LINE L1 567 673 -5446 28 0 0 0 chr1 103108808 103108836 -139555517 + AT_rich Low_complexity Low_complexity 1 28 0 1048 53 0 0 chr1 103109065 103109196 -139555157 - L1PA7 LINE L1 -10 6144 6014 333 198 8 151 chr1 103110063 103110189 -139554164 - MER92B LTR ERV1 -16 620 513 27 29 0 0 chr1 103110189 103110223 -139554130 + AT_rich Low_complexity Low_complexity 1 34 0 2430 66 0 13 chr1 103111801 103112104 -139552249 + AluSc SINE Alu 1 299 -10 21 57 0 0 chr1 103115752 103115787 -139548566 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 103116471 103116495 -139547858 + AT_rich Low_complexity Low_complexity 1 24 0 289 306 20 10 chr1 103116959 103117057 -139547296 + CT-rich Low_complexity Low_complexity 2 100 0 24 32 0 0 chr1 103117452 103117483 -139546870 + AT_rich Low_complexity Low_complexity 1 31 0 766 161 0 0 chr1 103117484 103117602 -139546751 - FLAM_C SINE Alu -20 123 6 180 77 0 0 chr1 103119680 103119706 -139544647 + (TG)n Simple_repeat Simple_repeat 2 27 0 189 213 0 0 chr1 103119784 103119831 -139544522 + (TA)n Simple_repeat Simple_repeat 1 47 0 21 89 0 0 chr1 103121655 103121711 -139542642 + AT_rich Low_complexity Low_complexity 1 56 0 788 154 0 63 chr1 103121765 103121908 -139542445 + FRAM SINE Alu 22 155 -21 207 0 0 0 chr1 103122058 103122081 -139542272 + (A)n Simple_repeat Simple_repeat 1 23 0 2322 73 0 38 chr1 103122391 103122708 -139541645 - AluSq SINE Alu -8 305 1 21 0 0 0 chr1 103123659 103123680 -139540673 + AT_rich Low_complexity Low_complexity 1 21 0 271 247 157 0 chr1 103124330 103124419 -139539934 + L3b LINE CR1 1261 1363 -220 2236 223 27 19 chr1 103124487 103125007 -139539346 + MER82 DNA MER2_type 4 527 -126 518 331 154 30 chr1 103125213 103125914 -139538439 - L2 LINE L2 -577 2737 1950 383 297 55 30 chr1 103127579 103127744 -139536609 + MIR SINE MIR 46 214 -48 21 36 0 0 chr1 103128002 103128030 -139536323 + AT_rich Low_complexity Low_complexity 1 28 0 568 216 156 60 chr1 103128119 103128318 -139536035 - MLT1K LTR MaLR -4 584 367 702 203 39 0 chr1 103129817 103129945 -139534408 + FLAM_A SINE Alu 1 133 0 275 325 24 16 chr1 103130277 103130400 -139533953 + MIR SINE MIR 88 211 -51 1079 123 92 10 chr1 103135156 103135351 -139529002 - MER46A DNA MER2_type 0 236 26 180 0 0 0 chr1 103135374 103135394 -139528959 + (A)n Simple_repeat Simple_repeat 1 20 0 280 282 153 46 chr1 103135613 103135744 -139528609 + L3 LINE CR1 322 466 -1111 543 178 206 45 chr1 103136487 103136734 -139527619 - L1ME2 LINE L1 -262 5885 5599 5019 178 51 13 chr1 103136751 103137124 -139527229 - L1PA16 LINE L1 -18 6146 5788 2284 81 14 0 chr1 103137124 103137421 -139526932 - AluSq SINE Alu -12 301 1 5019 178 51 13 chr1 103137421 103138908 -139525445 - L1PA16 LINE L1 -376 5788 4125 518 299 82 15 chr1 103138911 103139239 -139525114 - L1ME2 LINE L1 -558 5589 5240 1647 207 69 45 chr1 103139271 103139691 -139524662 - MLT1F LTR MaLR -110 432 3 413 285 141 0 chr1 103139738 103139987 -139524366 - L1ME2 LINE L1 -946 5183 4900 458 248 126 76 chr1 103140095 103140357 -139523996 - L1ME2 LINE L1 -5533 586 312 273 306 127 15 chr1 103140485 103140619 -139523734 - L1ME2 LINE L1 -5967 152 4 181 305 93 68 chr1 103141129 103141247 -139523106 - MIR3 SINE MIR -85 123 3 2398 50 7 7 chr1 103142104 103142406 -139521947 + AluY SINE Alu 3 304 -7 3032 205 91 22 chr1 103142681 103143305 -139521048 - L1ME1 LINE L1 -5 6161 5582 2176 109 0 3 chr1 103143305 103143608 -139520745 - AluSx SINE Alu -10 302 1 3032 205 91 22 chr1 103143608 103143897 -139520456 - L1ME1 LINE L1 -584 5582 5314 2248 68 58 0 chr1 103143897 103144192 -139520161 - AluSp SINE Alu -1 312 1 3032 205 91 22 chr1 103144192 103144463 -139519890 - L1ME1 LINE L1 -852 5314 4811 1249 170 121 8 chr1 103144715 103144980 -139519373 - AluSx SINE Alu -7 295 1 329 295 14 36 chr1 103145570 103145709 -139518644 + L2 LINE L2 2624 2759 -555 2005 95 0 0 chr1 103146380 103146642 -139517711 - AluSx SINE Alu -50 262 1 2251 104 3 0 chr1 103147519 103147827 -139516526 + AluSx SINE Alu 1 309 -3 274 291 48 0 chr1 103148327 103148430 -139515923 - L1MC/D LINE L1 -1947 5861 5754 919 175 7 0 chr1 103148444 103148598 -139515755 - AluJb SINE Alu -19 293 139 522 193 143 0 chr1 103148823 103148942 -139515411 - MIR SINE MIR -71 191 56 2206 105 0 0 chr1 103150536 103150832 -139513521 + AluSx SINE Alu 1 296 -16 1743 145 53 0 chr1 103150843 103151125 -139513228 + AluSx SINE Alu 3 299 -13 373 284 57 77 chr1 103152610 103152743 -139511610 + MIR SINE MIR 73 202 -60 1638 128 22 7 chr1 103152743 103153016 -139511337 + AluSx SINE Alu 16 292 -20 373 284 57 77 chr1 103153016 103153076 -139511277 + MIR SINE MIR 202 262 0 205 309 0 0 chr1 103153119 103153174 -139511179 + CT-rich Low_complexity Low_complexity 6 60 0 2069 109 3 3 chr1 103153219 103153543 -139510810 - AluJb SINE Alu 0 324 1 532 273 55 0 chr1 103154700 103154828 -139509525 - MER3 DNA MER1_type -74 135 1 1636 182 10 0 chr1 103156487 103156783 -139507570 + AluJo SINE Alu 1 299 -13 183 171 0 0 chr1 103157100 103157135 -139507218 + MIR SINE MIR 110 144 -64 293 245 282 25 chr1 103158441 103158604 -139505749 - MIR SINE MIR -10 252 48 1857 174 12 3 chr1 103160058 103160385 -139503968 - MER2 DNA MER2_type 0 345 16 2006 134 0 3 chr1 103160493 103160791 -139503562 + AluJb SINE Alu 1 297 -15 361 285 62 56 chr1 103160890 103161026 -139503327 + HAL1b LINE L1 1167 1306 -42 1989 115 14 0 chr1 103161026 103161321 -139503032 - AluSp SINE Alu -14 299 1 361 285 62 56 chr1 103161321 103161363 -139502990 + HAL1b LINE L1 1306 1346 -2 592 253 175 0 chr1 103163312 103163478 -139500875 + MIR SINE MIR 33 227 -35 1219 131 0 0 chr1 103165355 103165531 -139498822 - AluJ SINE Alu -14 298 123 7057 73 28 29 chr1 103165534 103166450 -139497903 - L1MA1 LINE L1 -4 6298 5382 1683 113 38 0 chr1 103166450 103166689 -139497664 - AluSx SINE Alu -64 248 1 7057 73 28 29 chr1 103166689 103166804 -139497549 - L1MA1 LINE L1 -920 5382 5268 831 185 0 0 chr1 103166804 103166934 -139497419 - AluJ SINE Alu -176 136 7 493 282 150 24 chr1 103166969 103167182 -139497171 - MIR SINE MIR 0 262 23 202 414 41 0 chr1 103167630 103167775 -139496578 + L2 LINE L2 2127 2277 -1037 209 362 68 30 chr1 103168132 103168367 -139495986 + L2 LINE L2 2807 3050 -222 498 312 66 43 chr1 103169197 103169546 -139494807 - L2 LINE L2 -2 3311 2955 552 277 108 0 chr1 103169904 103170052 -139494301 + MIR SINE MIR 33 196 -66 249 276 157 31 chr1 103170309 103170591 -139493762 + L1ME4a LINE L1 5596 5933 -188 216 0 0 0 chr1 103170783 103170807 -139493546 + (A)n Simple_repeat Simple_repeat 1 24 0 2157 118 0 0 chr1 103170809 103171106 -139493247 + AluSx SINE Alu 3 299 -13 654 193 269 42 chr1 103172427 103172691 -139491662 + MER5C DNA MER1_type 1 324 0 1717 119 28 75 chr1 103172971 103173289 -139491064 - AluJb SINE Alu -9 303 1 261 0 0 0 chr1 103173343 103173372 -139490981 + (CAA)n Simple_repeat Simple_repeat 2 30 0 304 225 93 101 chr1 103173713 103173842 -139490511 + L2 LINE L2 3168 3295 -18 660 227 80 37 chr1 103173889 103174255 -139490098 + MLT1J LTR MaLR 36 509 -2 193 284 50 113 chr1 103174303 103174525 -139489828 - L3b LINE CR1 -219 1364 1157 227 158 0 53 chr1 103174915 103174972 -139489381 + GA-rich Low_complexity Low_complexity 4 57 0 230 222 83 0 chr1 103175974 103176046 -139488307 - L3b LINE CR1 -380 1203 1126 685 200 71 29 chr1 103177098 103177268 -139487085 + MIR SINE MIR 65 241 -21 22 0 0 0 chr1 103177971 103177993 -139486360 + AT_rich Low_complexity Low_complexity 1 22 0 210 368 18 0 chr1 103178252 103178366 -139485987 + MIR SINE MIR 31 146 -116 300 332 24 44 chr1 103178689 103178939 -139485414 + MLT1K LTR MaLR 183 427 -161 307 317 0 0 chr1 103178971 103179053 -139485300 + MLT1K LTR MaLR 500 581 -7 180 289 172 66 chr1 103179260 103179516 -139484837 + L2 LINE L2 2219 2501 -813 297 263 66 0 chr1 103180463 103180539 -139483814 + L2 LINE L2 3172 3252 -20 332 278 133 26 chr1 103180646 103180797 -139483556 + MIR SINE MIR 85 251 -11 808 126 175 0 chr1 103181723 103181866 -139482487 - FRAM SINE Alu -8 168 1 542 324 7 7 chr1 103182921 103183057 -139481296 + MER91B DNA MER1_type 47 182 -8 506 307 151 20 chr1 103185995 103186635 -139477718 - L2 LINE L2 -733 2581 1853 949 250 42 4 chr1 103186637 103186873 -139477480 + L1PB4 LINE L1 5912 6156 0 215 290 101 31 chr1 103187234 103187428 -139476925 + L2 LINE L2 2799 3090 -182 247 259 116 26 chr1 103189332 103189521 -139474832 + L2 LINE L2 2848 3053 -219 265 329 24 41 chr1 103189856 103190026 -139474327 + L2 LINE L2 2815 2981 -291 1892 84 99 4 chr1 103190278 103190551 -139473802 + AluSq SINE Alu 1 299 -14 195 42 0 0 chr1 103194616 103194640 -139469713 + (T)n Simple_repeat Simple_repeat 1 24 0 1272 71 56 66 chr1 103198465 103198540 -139465813 - MER107 DNA MER1_type -2 195 121 2160 62 19 53 chr1 103198540 103198860 -139465493 - AluSc SINE Alu 0 309 1 1272 71 56 66 chr1 103198860 103198981 -139465372 - MER107 DNA MER1_type -76 121 1 460 263 211 6 chr1 103199485 103199656 -139464697 + MIR SINE MIR 46 251 -11 2056 89 0 86 chr1 103201477 103201813 -139462540 - AluSg SINE Alu -3 307 1 186 228 53 35 chr1 103201858 103201915 -139462438 - MIR SINE MIR -82 180 123 274 322 84 42 chr1 103203004 103203243 -139461110 + MLT1K LTR MaLR 168 416 -172 2249 75 0 3 chr1 103204543 103204835 -139459518 + AluY SINE Alu 1 291 -20 6138 189 50 20 chr1 103206039 103207451 -139456902 + Charlie1a DNA MER1_type 1 1455 0 918 239 186 34 chr1 103207778 103208502 -139455851 + L2 LINE L2 2457 3297 -16 453 248 188 5 chr1 103208502 103208704 -139455649 + L1MC4a LINE L1 5670 5908 -1900 1061 50 163 0 chr1 103209676 103209836 -139454517 + L1MA3 LINE L1 6120 6305 0 221 226 238 28 chr1 103209877 103209955 -139454398 - L2 LINE L2 -73 3240 3180 1735 156 0 32 chr1 103209955 103210269 -139454084 + AluJb SINE Alu 1 304 -8 221 226 238 28 chr1 103210269 103210371 -139453982 - L2 LINE L2 -133 3180 3022 534 259 144 37 chr1 103210388 103210574 -139453779 - MIR SINE MIR -4 258 37 1885 176 69 29 chr1 103210574 103211023 -139453330 - MLT1C LTR MaLR 0 467 1 534 259 144 37 chr1 103211023 103211063 -139453290 - MIR SINE MIR -225 37 3 731 204 34 7 chr1 103211948 103212095 -139452258 + Tigger5 DNA MER2_type 9 159 -2164 783 134 0 0 chr1 103212113 103212232 -139452121 + Tigger5 DNA MER2_type 2205 2323 0 944 223 81 32 chr1 103212232 103212382 -139451971 - MER58 DNA MER1_type -81 260 92 1854 100 4 4 chr1 103212382 103212641 -139451712 + AluSq SINE Alu 33 291 -22 944 223 81 32 chr1 103212641 103212737 -139451616 - MER58 DNA MER1_type -249 92 2 1754 101 56 21 chr1 103213252 103213538 -139450815 - AluSg SINE Alu -14 296 1 1450 234 73 52 chr1 103213561 103213857 -139450496 - L1ME1 LINE L1 -6 6160 5871 2329 88 77 43 chr1 103213857 103214023 -139450330 + THE1B LTR MaLR 1 160 -204 1901 138 0 10 chr1 103214023 103214344 -139450009 + AluSx SINE Alu 1 312 0 2329 88 77 43 chr1 103214344 103214529 -139449824 + THE1B LTR MaLR 160 364 0 1450 234 73 52 chr1 103214529 103214565 -139449788 - L1ME1 LINE L1 -295 5871 5837 1505 172 48 0 chr1 103214565 103214855 -139449498 + AluJo SINE Alu 1 304 -8 1450 234 73 52 chr1 103214855 103215016 -139449337 - L1ME1 LINE L1 -329 5837 5656 1696 177 7 3 chr1 103216428 103216728 -139447625 + AluJo SINE Alu 1 301 -11 1931 98 58 0 chr1 103216789 103217066 -139447287 - AluSx SINE Alu -17 295 3 192 330 122 9 chr1 103217453 103217568 -139446785 - MIR3 SINE MIR -7 201 74 2217 90 0 0 chr1 103217585 103217875 -139446478 + AluY SINE Alu 5 294 -17 2351 83 0 0 chr1 103219089 103219389 -139444964 - AluSq SINE Alu -12 301 2 329 250 40 80 chr1 103220533 103220633 -139443720 + MER91C DNA MER1_type 27 122 -18 1180 203 84 42 chr1 103221408 103221719 -139442634 + MER46C DNA MER2_type 3 326 -12 2107 99 3 0 chr1 103222559 103222853 -139441500 + AluSp SINE Alu 1 295 -18 1984 111 0 66 chr1 103222855 103223188 -139441165 + AluSx SINE Alu 1 311 -1 1080 207 34 50 chr1 103223211 103223526 -139440827 + L1MA9 LINE L1 5959 6270 -42 5247 105 29 11 chr1 103223526 103224291 -139440062 + MER4E LTR ERV1 1 779 0 3841 113 13 11 chr1 103224298 103224837 -139439516 + MER4E-int LTR ERV1 8 547 -6211 2643 104 157 25 chr1 103224830 103225308 -139439045 + MER4E-int LTR ERV1 675 1177 -5421 * 3004 140 69 45 chr1 103225370 103225934 -139438419 + MER4E-int LTR ERV1 1460 1870 -4728 2297 83 3 0 chr1 103225934 103226235 -139438118 + AluSp SINE Alu 1 302 -11 3004 140 69 45 chr1 103226235 103226866 -139437487 + MER4E-int LTR ERV1 1870 2485 -4113 388 80 0 0 chr1 103226877 103226927 -139437426 + MER4B-int LTR ERV1 4018 4067 -2691 967 111 28 0 chr1 103226936 103227080 -139437273 + MER4B-int LTR ERV1 4452 4599 -2159 363 209 313 0 chr1 103227080 103227195 -139437158 - MER3 DNA MER1_type -55 154 4 2081 90 21 7 chr1 103227397 103227685 -139436668 - AluSx SINE Alu -18 294 3 383 308 54 8 chr1 103229292 103229422 -139434931 + L3 LINE CR1 349 484 -1093 1958 126 11 0 chr1 103229723 103230009 -139434344 + AluSx SINE Alu 5 293 -19 817 245 21 56 chr1 103230046 103230279 -139434074 + MIR SINE MIR 13 237 -25 808 305 143 51 chr1 103230369 103231031 -139433322 + L3 LINE CR1 778 1500 -77 296 242 194 24 chr1 103231068 103231192 -139433161 - MIR SINE MIR 0 262 118 21 0 0 0 chr1 103231963 103231984 -139432369 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 103232250 103232274 -139432079 + AT_rich Low_complexity Low_complexity 1 24 0 446 304 123 64 chr1 103233144 103233502 -139430851 - L2 LINE L2 -4 3268 2890 1468 212 245 39 chr1 103233723 103234233 -139430120 + MLT1E3 LTR MaLR 2 616 -8 1022 276 132 26 chr1 103234242 103234666 -139429687 + L2 LINE L2 2837 3305 -8 642 345 57 18 chr1 103234731 103235120 -139429233 - L2 LINE L2 -466 2848 2445 234 154 58 39 chr1 103235135 103235187 -139429166 + L2 LINE L2 3257 3309 -4 226 270 122 0 chr1 103235701 103235816 -139428537 - L1MEd LINE L1 -4840 1291 1163 1284 253 93 62 chr1 103235828 103236222 -139428131 - L1MEd LINE L1 -4928 1191 764 1456 168 141 0 chr1 103236222 103236484 -139427869 - AluJo SINE Alu -3 299 1 1284 253 93 62 chr1 103236484 103236802 -139427551 - L1MEd LINE L1 -5355 764 457 925 236 75 124 chr1 103236869 103237342 -139427011 + L1M4 LINE L1 3442 3937 -2209 183 129 0 0 chr1 103237342 103237373 -139426980 + (A)n Simple_repeat Simple_repeat 1 31 0 925 236 75 124 chr1 103237373 103237561 -139426792 + L1M4 LINE L1 3937 4133 -2013 2070 93 21 0 chr1 103237561 103237852 -139426501 - AluSc SINE Alu -12 297 1 925 236 75 124 chr1 103237852 103238045 -139426308 + L1M4 LINE L1 4133 4281 -1865 1499 123 13 21 chr1 103238045 103238281 -139426072 + AluJb SINE Alu 65 298 -14 925 236 75 124 chr1 103238281 103238331 -139426022 + L1M4 LINE L1 4281 4332 -1814 1632 156 7 42 chr1 103238798 103239106 -139425247 - AluJo SINE Alu -15 297 1 283 321 48 0 chr1 103239548 103239632 -139424721 + L2 LINE L2 3127 3214 -58 270 0 0 0 chr1 103239667 103239697 -139424656 + (TG)n Simple_repeat Simple_repeat 2 31 0 180 111 0 0 chr1 103240320 103240347 -139424006 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 956 137 0 0 chr1 103240349 103240495 -139423858 - AluSg/x SINE Alu -33 279 134 2126 92 0 36 chr1 103240495 103240657 -139423696 - AluSq SINE Alu -18 295 148 2240 88 3 0 chr1 103240657 103240952 -139423401 - AluSp SINE Alu -17 296 1 2126 92 0 36 chr1 103240952 103241095 -139423258 - AluSq SINE Alu -165 148 1 2006 111 7 13 chr1 103241104 103241402 -139422951 - AluSx SINE Alu -16 296 1 811 334 204 34 chr1 103241754 103242634 -139421719 - L3 LINE CR1 -483 1094 65 255 258 124 0 chr1 103243283 103243372 -139420981 + L2 LINE L2 3214 3313 0 2222 87 3 3 chr1 103243734 103244032 -139420321 - AluSp SINE Alu -15 298 1 1042 258 87 99 chr1 103245068 103245817 -139418536 + L2 LINE L2 2049 2788 -526 637 186 150 0 chr1 103245829 103246022 -139418331 - Charlie5 DNA MER1_type -27 2585 2364 418 362 47 43 chr1 103246026 103246261 -139418092 + L2 LINE L2 3036 3271 -1 354 241 125 18 chr1 103246672 103246784 -139417569 - MIR3 SINE MIR -76 132 9 208 262 20 42 chr1 103247045 103247144 -139417209 - MIR SINE MIR -107 101 15 2162 116 0 7 chr1 103248316 103248626 -139415727 - AluSx SINE Alu -4 308 1 2276 114 3 6 chr1 103249378 103249711 -139414642 + L1PB1 LINE L1 5820 6151 0 253 312 64 18 chr1 103250177 103250286 -139414067 + MIR SINE MIR 43 156 -106 2040 118 0 7 chr1 103250618 103250906 -139413447 - AluSg SINE Alu -24 286 1 472 294 119 50 chr1 103252529 103252872 -139411481 + L2 LINE L2 2849 3215 -98 978 218 29 60 chr1 103253585 103253891 -139410462 + L1MC5 LINE L1 7628 7925 -36 2041 99 15 0 chr1 103253891 103254163 -139410190 - AluSg SINE Alu -34 276 1 225 0 0 0 chr1 103255539 103255564 -139408789 + (A)n Simple_repeat Simple_repeat 1 25 0 258 279 47 58 chr1 103257902 103258074 -139406279 + L2 LINE L2 2829 2998 -274 1998 211 63 38 chr1 103258076 103258597 -139405756 - MLT1F LTR MaLR -2 540 7 1042 267 67 0 chr1 103258708 103258978 -139405375 - MLT1H LTR MaLR -251 298 11 372 171 0 66 chr1 103258990 103259066 -139405287 + L2 LINE L2 3243 3313 0 471 281 179 10 chr1 103259304 103259500 -139404853 + MIR SINE MIR 24 252 -10 571 334 63 1 chr1 103259959 103260190 -139404163 - MIR SINE MIR -13 249 6 1042 198 20 0 chr1 103260340 103260537 -139403816 + MER3 DNA MER1_type 8 208 -1 189 195 0 0 chr1 103261184 103261225 -139403128 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2376 52 3 0 chr1 103261316 103261604 -139402749 - AluY SINE Alu -22 289 1 375 316 36 7 chr1 103261640 103261779 -139402574 + L2 LINE L2 3162 3304 -9 21 57 0 0 chr1 103262099 103262134 -139402219 + AT_rich Low_complexity Low_complexity 1 35 0 322 104 21 0 chr1 103262375 103262423 -139401930 - L2 LINE L2 -3 3310 3262 330 306 9 18 chr1 103262742 103262853 -139401500 - MIR SINE MIR -119 143 34 192 250 0 54 chr1 103263662 103263718 -139400635 + MIR SINE MIR 25 77 -131 191 343 78 0 chr1 103263737 103263839 -139400514 + L2 LINE L2 2724 2833 -481 970 295 58 25 chr1 103263839 103264232 -139400121 - LTR16C LTR ERVL 0 491 86 1710 219 108 11 chr1 103264284 103264718 -139399635 + MLT1H LTR MaLR 71 546 -3 2084 101 27 10 chr1 103264766 103265064 -139399289 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr1 103265424 103265448 -139398905 + AT_rich Low_complexity Low_complexity 1 24 0 690 266 112 19 chr1 103265760 103265974 -139398379 + MIR SINE MIR 8 241 -21 1868 157 0 22 chr1 103266006 103266325 -139398028 - AluJb SINE Alu 0 312 1 2329 69 3 7 chr1 103266659 103266965 -139397388 - AluY SINE Alu -6 305 1 660 200 0 17 chr1 103267225 103267345 -139397008 - FAM SINE Alu -16 169 52 383 333 8 0 chr1 103268650 103268770 -139395583 + L2 LINE L2 2935 3055 -217 450 287 261 11 chr1 103269118 103269306 -139395047 + MIR SINE MIR 28 262 0 467 298 25 61 chr1 103272342 103272587 -139391766 + L2 LINE L2 3078 3313 0 530 269 25 14 chr1 103272696 103272968 -139391385 - L1M LINE L1 -739 5423 5147 927 288 48 44 chr1 103272981 103273384 -139390969 - L1M4 LINE L1 -1048 5098 4689 1662 173 6 26 chr1 103273384 103273696 -139390657 - AluJo SINE Alu -6 306 1 927 288 48 44 chr1 103273696 103273911 -139390442 - L1M4 LINE L1 -1457 4689 4477 516 239 6 54 chr1 103273916 103274083 -139390270 + MER104 DNA Tc2 19 177 -3 251 236 109 33 chr1 103274201 103274339 -139390014 - L1M LINE L1 -744 5402 5273 436 309 49 25 chr1 103274364 103274568 -139389785 - L1MEd LINE L1 -5346 773 565 428 132 54 70 chr1 103274963 103275092 -139389261 - L1ME4a LINE L1 -11 6110 5984 1383 212 94 40 chr1 103275098 103275523 -139388830 + MLT1C LTR MaLR 8 455 -12 4131 123 66 85 chr1 103275523 103276323 -139388030 - LTR1 LTR ERV1 0 785 1 2118 149 37 0 chr1 103276484 103276832 -139387521 - MER47A DNA MER2_type 0 366 6 780 251 60 7 chr1 103276850 103277119 -139387234 - LTR16A LTR ERVL -97 360 58 204 309 32 53 chr1 103277742 103277836 -139386517 + L2 LINE L2 3216 3307 -6 3054 186 52 26 chr1 103278067 103278745 -139385608 + L1MC3 LINE L1 7062 7756 -29 447 19 0 0 chr1 103278965 103279017 -139385336 + (TAAAA)n Simple_repeat Simple_repeat 1 52 0 1935 153 0 6 chr1 103279656 103279969 -139384384 + AluSx SINE Alu 1 311 -1 209 361 9 9 chr1 103280980 103281088 -139383265 + (TG)n Simple_repeat Simple_repeat 1 108 0 658 300 39 54 chr1 103282174 103282454 -139381899 + L2 LINE L2 2987 3262 -10 21 0 0 0 chr1 103282800 103282821 -139381532 + AT_rich Low_complexity Low_complexity 1 21 0 2210 95 7 3 chr1 103283504 103283810 -139380543 - AluSq SINE Alu -6 307 1 732 222 70 0 chr1 103284219 103284390 -139379963 + MER5A DNA MER1_type 7 189 0 2036 201 42 31 chr1 103284557 103285014 -139379339 + MLT1C LTR MaLR 6 467 0 1491 196 10 14 chr1 103285166 103285457 -139378896 - AluJo SINE Alu -22 290 1 356 211 42 0 chr1 103285527 103285598 -139378755 + MIR SINE MIR 118 191 -71 189 74 0 0 chr1 103285945 103285972 -139378381 + (CAGGG)n Simple_repeat Simple_repeat 2 28 0 289 136 0 0 chr1 103286111 103286155 -139378198 - MER53 DNA DNA 0 189 146 637 233 7 27 chr1 103286873 103287019 -139377334 + MER45A DNA AcHobo 36 178 0 2257 100 0 3 chr1 103287076 103287387 -139376966 + AluSx SINE Alu 1 310 -2 918 256 64 0 chr1 103288654 103288873 -139375480 + MIR SINE MIR 18 250 -12 263 276 99 87 chr1 103288813 103288878 -139375475 - MIR SINE MIR -6 256 193 * 190 0 67 0 chr1 103288878 103288908 -139375445 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2006 99 7 7 chr1 103288911 103289194 -139375159 - AluSq SINE Alu -30 283 1 263 276 99 87 chr1 103289194 103289348 -139375005 - MIR SINE MIR -70 192 36 293 263 86 27 chr1 103291442 103291553 -139372800 - MIR SINE MIR -62 146 67 818 143 0 27 chr1 103293081 103293228 -139371125 + FLAM_C SINE Alu 1 143 0 320 323 193 17 chr1 103294015 103294368 -139369985 + L2 LINE L2 1750 2164 -1150 427 275 90 59 chr1 103294383 103294713 -139369640 + LTR67 LTR ERVL 3 367 -190 433 387 128 11 chr1 103294835 103295217 -139369136 + L2 LINE L2 2524 2950 -364 318 277 89 18 chr1 103295433 103295545 -139368808 - L2 LINE L2 0 3272 3153 194 276 95 9 chr1 103295763 103295868 -139368485 - L2 LINE L2 -1011 2303 2190 815 147 104 12 chr1 103296033 103296196 -139368157 + MER5B DNA MER1_type 1 178 0 493 200 43 50 chr1 103296297 103296437 -139367916 - L2 LINE L2 0 3313 3175 644 270 172 48 chr1 103296495 103296873 -139367480 - L2 LINE L2 -5 3308 2884 616 261 86 45 chr1 103296982 103297204 -139367149 + MIR SINE MIR 6 236 -26 25 51 0 0 chr1 103299634 103299673 -139364680 + GC_rich Low_complexity Low_complexity 1 39 0 1846 262 107 27 chr1 103300305 103300534 -139363819 + L1ME3A LINE L1 4713 4922 -1248 2200 86 7 0 chr1 103300534 103300826 -139363527 - AluSq SINE Alu -19 294 1 1846 262 107 27 chr1 103300826 103301908 -139362445 + L1ME3A LINE L1 4922 6161 -9 365 280 147 0 chr1 103302343 103302486 -139361867 + MIR SINE MIR 88 251 -11 381 250 33 0 chr1 103302510 103302602 -139361751 - MIR SINE MIR -71 191 97 253 209 0 0 chr1 103302611 103302654 -139361699 - L2 LINE L2 -4 3309 3267 186 279 23 0 chr1 103302649 103302692 -139361661 - MIR SINE MIR -168 94 51 * 2069 124 7 0 chr1 103302697 103303003 -139361350 - AluSx SINE Alu -4 308 1 209 173 231 0 chr1 103303054 103303106 -139361247 + L2 LINE L2 3234 3297 -16 * 215 200 0 0 chr1 103303074 103303109 -139361244 + MIR SINE MIR 221 255 -7 2111 243 158 14 chr1 103303163 103303327 -139361026 - L1MC4a LINE L1 -1656 6152 6013 258 81 0 0 chr1 103303327 103303364 -139360989 + (TG)n Simple_repeat Simple_repeat 2 38 0 2111 243 158 14 chr1 103303364 103303985 -139360368 - L1MC4a LINE L1 -1795 6013 5254 988 148 43 0 chr1 103304234 103304396 -139359957 + FAM SINE Alu 2 170 -5 335 262 208 18 chr1 103304455 103304623 -139359730 - MIR SINE MIR -28 234 35 198 286 18 0 chr1 103304883 103304939 -139359414 + L2 LINE L2 3021 3077 -195 2093 132 3 0 chr1 103305270 103305580 -139358773 - AluSx SINE Alu -1 311 1 1930 133 16 10 chr1 103306555 103306737 -139357616 - AluSx SINE Alu -1 311 125 295 21 64 0 chr1 103306737 103306784 -139357569 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 1930 133 16 10 chr1 103306784 103306910 -139357443 - AluSx SINE Alu -187 125 1 182 292 46 15 chr1 103306990 103307055 -139357298 - L2 LINE L2 -15 3298 3232 1479 132 23 137 chr1 103307178 103307520 -139356833 + AluYb8 SINE Alu 1 303 -5 250 248 119 18 chr1 103308007 103308116 -139356237 + L1MC/D LINE L1 5772 5891 -1917 918 224 112 0 chr1 103308315 103308529 -139355824 - MIR SINE MIR -13 249 12 602 277 124 15 chr1 103308542 103308776 -139355577 + MIR SINE MIR 5 259 -3 264 320 102 22 chr1 103309024 103309168 -139355185 - MIR3 SINE MIR -74 134 8 474 277 72 11 chr1 103310480 103310669 -139353684 - MIR SINE MIR -29 233 36 238 222 0 0 chr1 103310802 103310847 -139353506 + L2 LINE L2 3255 3299 -14 195 235 255 0 chr1 103311012 103311114 -139353239 + MER5A DNA MER1_type 26 153 -36 665 243 96 11 chr1 103311905 103312082 -139352271 - MIR SINE MIR -43 219 28 181 120 0 0 chr1 103312195 103312220 -139352133 - L3 LINE CR1 -611 966 942 242 318 9 9 chr1 103312440 103312550 -139351803 + CT-rich Low_complexity Low_complexity 4 113 0 194 298 89 40 chr1 103312603 103312727 -139351626 + MER5A DNA MER1_type 36 165 -24 2518 75 0 0 chr1 103413169 103413476 -139250877 + AluY SINE Alu 1 307 -4 183 212 0 0 chr1 103413664 103413697 -139250656 - L2 LINE L2 -30 3283 3251 * 715 284 45 5 chr1 103413668 103413890 -139250463 - MIR SINE MIR -28 234 4 234 128 0 0 chr1 103413930 103413969 -139250384 + (CA)n Simple_repeat Simple_repeat 1 39 0 696 267 43 26 chr1 103413977 103414325 -139250028 + L1MC4a LINE L1 5125 5497 -665 1988 233 37 29 chr1 103414381 103414892 -139249461 - MER68 LTR ERV1 -45 517 3 556 279 121 25 chr1 103414925 103415205 -139249148 + L1MC4a LINE L1 5576 5882 -239 407 284 76 48 chr1 103415215 103415465 -139248888 + L2 LINE L2 3037 3293 -20 5221 116 45 23 chr1 103415474 103416193 -139248160 + L1PA16 LINE L1 5048 5799 -367 333 0 0 0 chr1 103416193 103416230 -139248123 + (TA)n Simple_repeat Simple_repeat 2 38 0 5221 116 45 23 chr1 103416230 103416598 -139247755 + L1PA16 LINE L1 5799 6157 -9 667 139 120 0 chr1 103416985 103417093 -139247260 + FLAM_C SINE Alu 2 122 -21 31 44 0 0 chr1 103417093 103417138 -139247215 + AT_rich Low_complexity Low_complexity 1 45 0 838 207 30 0 chr1 103417428 103417597 -139246756 - MER45A DNA AcHobo 0 178 5 607 304 142 15 chr1 103417662 103417994 -139246359 + MLT1J LTR MaLR 8 381 -130 282 160 0 0 chr1 103418707 103418757 -139245596 + (CA)n Simple_repeat Simple_repeat 1 50 0 203 293 131 20 chr1 103419070 103419169 -139245184 - MIR SINE MIR -75 133 24 199 313 119 37 chr1 103420789 103420923 -139243430 - L2 LINE L2 -21 3251 3107 277 350 17 8 chr1 103421247 103421367 -139242986 - MER5A DNA MER1_type -3 186 66 2111 119 3 23 chr1 103422991 103423293 -139241060 + AluSx SINE Alu 1 296 -16 251 231 192 39 chr1 103423760 103423864 -139240489 - MIR SINE MIR -109 153 34 2411 149 23 41 chr1 103424189 103424364 -139239989 + MSTA LTR MaLR 1 178 -250 2316 88 0 3 chr1 103424364 103424688 -139239665 - AluSx SINE Alu 0 323 1 2411 149 23 41 chr1 103424688 103424947 -139239406 + MSTA LTR MaLR 178 428 0 503 264 31 0 chr1 103425271 103425400 -139238953 - MIR SINE MIR -82 180 48 968 194 0 0 chr1 103425421 103425586 -139238767 - FRAM SINE Alu -1 165 1 252 0 0 0 chr1 103425623 103425651 -139238702 + (TTTAA)n Simple_repeat Simple_repeat 2 29 0 5450 153 31 20 chr1 103426010 103426956 -139237397 + L1M4c LINE L1 14 969 -5415 1904 88 0 0 chr1 103426956 103427184 -139237169 + AluSq SINE Alu 1 228 -85 1361 126 0 0 chr1 103427288 103427471 -139236882 - AluSg/x SINE Alu -20 292 110 266 253 58 11 chr1 103428067 103428154 -139236199 - MIR SINE MIR -161 101 11 2352 53 11 7 chr1 103429171 103429487 -139234866 - AluY SINE Alu 0 317 1 2514 56 7 7 chr1 103429920 103430224 -139234129 - AluY SINE Alu -7 304 1 284 263 42 0 chr1 103430311 103430406 -139233947 + Charlie2 DNA MER1_type 45 143 -2719 450 294 101 16 chr1 103431250 103431498 -139232855 + L2 LINE L2 1830 2098 -1216 23 0 0 0 chr1 103431507 103431530 -139232823 + AT_rich Low_complexity Low_complexity 1 23 0 1317 252 100 11 chr1 103431539 103431980 -139232373 - L1ME3A LINE L1 -13 6157 5678 423 262 87 0 chr1 103433724 103433827 -139230526 - MER91A DNA MER1_type 0 196 85 292 309 132 0 chr1 103433823 103433959 -139230394 - MER91A DNA MER1_type -22 174 21 * 3933 149 64 30 chr1 103435172 103435606 -139228747 + L1MB3 LINE L1 5394 5811 -372 2218 110 6 19 chr1 103435606 103435923 -139228430 + AluSp SINE Alu 1 313 0 3933 149 64 30 chr1 103435923 103435940 -139228413 + L1MB3 LINE L1 5811 5826 -357 2196 176 3 6 chr1 103435940 103436304 -139228049 + MLT1A1 LTR MaLR 1 363 -2 3933 149 64 30 chr1 103436304 103436596 -139227757 + L1MB3 LINE L1 5826 6164 -19 311 287 52 65 chr1 103436890 103437273 -139227080 + L2 LINE L2 2213 2590 -724 378 0 0 0 chr1 103437498 103437540 -139226813 + (CAT)n Simple_repeat Simple_repeat 3 44 0 393 233 93 7 chr1 103437685 103437824 -139226529 + MIR SINE MIR 53 206 -56 22 56 0 0 chr1 103437829 103437865 -139226488 + AT_rich Low_complexity Low_complexity 1 36 0 365 306 48 7 chr1 103438284 103438431 -139225922 - MER117 DNA MER1_type -26 171 19 205 71 95 0 chr1 103439146 103439188 -139225165 + (GGGTG)n Simple_repeat Simple_repeat 3 48 0 785 182 34 34 chr1 103439508 103439684 -139224669 + MER104 DNA MER2_type 1 176 -4 750 236 167 10 chr1 103440283 103440571 -139223782 - LTR50 LTR ERVL -59 736 404 237 246 29 14 chr1 103440948 103441017 -139223336 - L2 LINE L2 -42 3230 3161 403 265 75 20 chr1 103441798 103441945 -139222408 - MIR SINE MIR -10 252 98 658 233 8 0 chr1 103442072 103442205 -139222148 + MER94 DNA DNA 1 134 0 192 313 0 0 chr1 103442214 103442262 -139222091 - L2 LINE L2 -81 3191 3144 878 139 17 17 chr1 103442985 103443165 -139221188 + GA-rich Low_complexity Low_complexity 1 180 0 562 240 16 16 chr1 103443595 103443724 -139220629 - MER5B DNA MER1_type 0 178 50 737 299 35 16 chr1 103444339 103444593 -139219760 - MIR SINE MIR -3 259 1 196 268 56 0 chr1 103444593 103444662 -139219691 - MIR SINE MIR -102 160 88 446 307 9 9 chr1 103445090 103445204 -139219149 - L2 LINE L2 -2 3311 3198 2535 60 0 3 chr1 103445279 103445577 -139218776 + AluY SINE Alu 1 297 -14 201 121 0 0 chr1 103446385 103446418 -139217935 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 380 288 64 16 chr1 103446457 103446582 -139217771 + MIR SINE MIR 18 148 -60 295 164 0 104 chr1 103446610 103446677 -139217676 + MER5A DNA MER1_type 37 96 -93 1617 201 11 0 chr1 103447267 103447550 -139216803 - AluJb SINE Alu -26 286 1 260 225 270 45 chr1 103448264 103448375 -139215978 + L2 LINE L2 3136 3271 -1 418 188 12 0 chr1 103449738 103449818 -139214535 + MER58B DNA MER1_type 223 303 -38 229 260 14 14 chr1 103450210 103450283 -139214070 - MLT1K LTR MaLR -4 584 512 2415 60 28 0 chr1 103450996 103451281 -139213072 + AluY SINE Alu 1 293 -18 349 352 122 36 chr1 103451536 103452392 -139211961 - L2 LINE L2 -1674 1640 712 320 301 115 26 chr1 103453044 103453270 -139211083 - L2 LINE L2 -7 3265 3020 207 290 0 43 chr1 103454861 103454930 -139209423 - L2 LINE L2 -2 3270 3205 405 215 0 0 chr1 103455035 103455128 -139209225 + (TG)n Simple_repeat Simple_repeat 2 94 0 310 203 259 51 chr1 103455985 103456143 -139208210 - MIR SINE MIR -1 261 71 869 194 85 35 chr1 103456426 103456627 -139207726 - MER20 DNA MER1_type 0 219 9 343 268 24 0 chr1 103457283 103457365 -139206988 - MIR3 SINE MIR -10 198 115 * 458 326 61 32 chr1 103457353 103457632 -139206721 - L2 LINE L2 -12 3301 3015 289 342 155 6 chr1 103457917 103458078 -139206275 - MIR SINE MIR -59 203 19 796 211 63 6 chr1 103458088 103458263 -139206090 + MER5A DNA MER1_type 3 187 -2 231 302 0 0 chr1 103459437 103459500 -139204853 + L2 LINE L2 2974 3036 -236 895 218 33 14 chr1 103459588 103459799 -139204554 + MIR SINE MIR 48 262 0 758 187 29 23 chr1 103460270 103460441 -139203912 - MER53 DNA DNA -8 181 10 1677 198 82 52 chr1 103460576 103461041 -139203312 - MLT1D LTR MaLR 0 505 27 359 283 175 11 chr1 103461553 103461730 -139202623 + MIR SINE MIR 7 212 -50 310 319 47 63 chr1 103461978 103462019 -139202334 - MER5A DNA MER1_type 0 189 149 2410 46 0 33 chr1 103462019 103462341 -139202012 + AluY SINE Alu 1 311 0 310 319 47 63 chr1 103462341 103462490 -139201863 - MER5A DNA MER1_type -40 149 2 617 250 0 0 chr1 103463803 103463927 -139200426 - MER5B DNA MER1_type -54 124 1 225 154 0 0 chr1 103465285 103465324 -139199029 + CT-rich Low_complexity Low_complexity 3 41 0 195 377 0 0 chr1 103466536 103466597 -139197756 - L2 LINE L2 -5 3267 3207 414 0 0 0 chr1 103468448 103468494 -139195859 + (TG)n Simple_repeat Simple_repeat 1 46 0 212 259 0 19 chr1 103468819 103468873 -139195480 + L2 LINE L2 3216 3268 -4 291 272 62 148 chr1 103469265 103469603 -139194750 - L2 LINE L2 0 3272 2964 2942 154 18 20 chr1 103469805 103470240 -139194113 + MER6A DNA MER2_type 60 495 -370 2140 124 23 3 chr1 103470240 103470546 -139193807 + AluSx SINE Alu 1 312 0 2942 154 18 20 chr1 103470546 103470656 -139193697 + MER6A DNA MER2_type 495 604 -1 703 322 158 15 chr1 103471438 103472053 -139192300 - L2 LINE L2 -927 2387 1685 458 200 160 0 chr1 103472115 103472215 -139192138 + L2 LINE L2 3191 3306 -7 1998 150 83 6 chr1 103472790 103473129 -139191224 + MLT1A1 LTR MaLR 1 365 0 235 213 0 0 chr1 103473322 103473369 -139190984 + L1ME4a LINE L1 5974 6020 -101 326 289 143 40 chr1 103474028 103474472 -139189881 - L2 LINE L2 -160 3112 2621 793 267 78 18 chr1 103474647 103475029 -139189324 - L1MC5 LINE L1 -58 7903 7499 184 298 21 0 chr1 103477205 103477252 -139187101 - L2 LINE L2 -56 3216 3169 258 160 0 0 chr1 103478359 103478409 -139185944 + (CA)n Simple_repeat Simple_repeat 2 51 0 2283 78 0 3 chr1 103478751 103479058 -139185295 - AluY SINE Alu 0 306 1 225 0 0 0 chr1 103480726 103480751 -139183602 + (TG)n Simple_repeat Simple_repeat 1 25 0 205 370 102 28 chr1 103482635 103482851 -139181502 + L2 LINE L2 2262 2493 -821 * 611 289 61 31 chr1 103482850 103483078 -139181275 - MIR SINE MIR -1 261 27 234 261 176 33 chr1 103483513 103483666 -139180687 - MLT1K LTR MaLR -53 535 361 5232 85 25 4 chr1 103484652 103485366 -139178987 - L1PA8 LINE L1 -1 6171 5443 3120 102 6 0 chr1 103485368 103485837 -139178516 - L1PA8 LINE L1 -890 5256 4785 305 370 0 0 chr1 103485839 103485931 -139178422 + MER5A DNA MER1_type 64 155 -34 728 191 307 0 chr1 103486306 103486495 -139177858 + MIR SINE MIR 13 259 -3 415 272 108 25 chr1 103488311 103488527 -139175826 - MIR SINE MIR -16 246 16 205 161 0 0 chr1 103492083 103492114 -139172239 + MIR SINE MIR 4 34 -228 412 265 10 10 chr1 103492163 103492265 -139172088 + MIR SINE MIR 161 262 0 291 269 87 19 chr1 103492274 103492378 -139171975 - MIR SINE MIR -38 224 114 1067 186 50 0 chr1 103492999 103493198 -139171155 - MER3 DNA MER1_type 0 209 1 305 300 46 34 chr1 103493288 103493442 -139170911 + MIR3 SINE MIR 25 180 -28 197 340 144 0 chr1 103494631 103494728 -139169625 + MIR SINE MIR 36 146 -62 378 248 21 99 chr1 103494825 103494966 -139169387 + MIR SINE MIR 17 146 -62 250 250 17 0 chr1 103495143 103495203 -139169150 - MER81 DNA DNA -20 94 34 722 210 31 12 chr1 103495301 103495463 -139168890 - MER5B DNA MER1_type -13 165 1 451 279 52 95 chr1 103495491 103495817 -139168536 + L2 LINE L2 2939 3250 -22 22 70 0 0 chr1 103496978 103497021 -139167332 + AT_rich Low_complexity Low_complexity 1 43 0 230 241 0 0 chr1 103499157 103499211 -139165142 - L2 LINE L2 -3 3310 3257 1854 167 0 0 chr1 103501334 103501640 -139162713 + AluSx SINE Alu 1 306 -6 1274 169 264 0 chr1 103502676 103502971 -139161382 - MER93b LTR ERV1 0 373 1 1092 271 87 49 chr1 103505021 103505805 -139158548 + L2 LINE L2 2497 3298 -15 1265 199 48 70 chr1 103506181 103506537 -139157816 - MLT1B LTR MaLR 0 390 43 435 262 109 33 chr1 103506555 103506738 -139157615 - MER21B LTR ERV1 -53 810 614 546 229 58 33 chr1 103506779 103507107 -139157246 - MER21B LTR ERV1 -351 580 98 434 224 0 84 chr1 103507076 103507237 -139157116 - MER21B LTR ERV1 -404 201 14 * 360 280 24 24 chr1 103507441 103507566 -139156787 - L2 LINE L2 -1 3271 3147 779 301 32 4 chr1 103507730 103507976 -139156377 + MIR SINE MIR 9 261 -1 198 150 0 0 chr1 103509195 103509235 -139155118 + (T)n Simple_repeat Simple_repeat 1 40 0 26 64 0 0 chr1 103509309 103509356 -139154997 + AT_rich Low_complexity Low_complexity 1 47 0 222 62 0 0 chr1 103510135 103510167 -139154186 + (TG)n Simple_repeat Simple_repeat 2 33 0 2290 86 0 0 chr1 103510349 103510651 -139153702 - AluSg SINE Alu -8 302 1 708 295 26 13 chr1 103512501 103512733 -139151620 + MIR SINE MIR 18 252 -10 203 258 45 0 chr1 103513312 103513378 -139150975 - MIR SINE MIR -92 116 48 1962 105 21 62 chr1 103513509 103513834 -139150519 - AluSx SINE Alu 0 312 1 385 284 57 0 chr1 103514540 103514681 -139149672 - MIR SINE MIR 0 262 114 663 187 18 12 chr1 103515850 103516016 -139148337 + GA-rich Low_complexity Low_complexity 3 169 0 190 229 0 36 chr1 103516161 103516244 -139148109 + GA-rich Low_complexity Low_complexity 3 82 0 813 235 42 103 chr1 103516245 103516721 -139147632 - L1ME4a LINE L1 -56 6065 5619 2162 84 0 28 chr1 103518091 103518411 -139145942 - AluY SINE Alu 0 311 1 195 307 40 40 chr1 103519479 103519554 -139144799 + MIR SINE MIR 40 114 -94 517 262 104 18 chr1 103522395 103522559 -139141794 - MIR SINE MIR -21 241 64 2044 101 31 0 chr1 103523555 103523843 -139140510 + AluSq SINE Alu 1 297 -16 783 288 33 5 chr1 103525127 103525339 -139139014 + MIR SINE MIR 1 218 -44 311 328 53 23 chr1 103525404 103525535 -139138818 - MIR SINE MIR -47 215 81 1807 164 8 74 chr1 103525738 103526105 -139138248 - LTR3b LTR ERVK 0 500 158 243 297 115 71 chr1 103526727 103526771 -139137582 - MIR SINE MIR -60 202 161 1944 136 0 13 chr1 103526771 103527081 -139137272 - AluJo SINE Alu -1 311 6 243 297 115 71 chr1 103527081 103527218 -139137135 - MIR SINE MIR -101 161 13 1942 123 6 25 chr1 103527551 103527869 -139136484 - AluSx SINE Alu 0 312 1 191 242 16 81 chr1 103529586 103529648 -139134705 + L2 LINE L2 3209 3266 -6 332 243 72 59 chr1 103529915 103530067 -139134286 - L3 LINE CR1 -86 1491 1338 1880 136 13 13 chr1 103531377 103531687 -139132666 - AluSx SINE Alu -2 310 1 252 274 41 0 chr1 103531702 103531775 -139132578 - L1ME LINE L1 -351 5770 5695 379 223 96 0 chr1 103532165 103532259 -139132094 + MIR SINE MIR 101 203 -59 348 234 21 0 chr1 103532268 103532362 -139131991 - MLT1J LTR MaLR -3 508 413 693 170 0 0 chr1 103533211 103533376 -139130977 + CT-rich Low_complexity Low_complexity 1 165 0 280 192 82 27 chr1 103533495 103533568 -139130785 + MIR3 SINE MIR 121 197 -11 476 298 57 61 chr1 103533766 103534009 -139130344 + MIR SINE MIR 4 250 -12 523 315 178 17 chr1 103534372 103535131 -139129222 - L2 LINE L2 -1 3312 2423 210 296 107 82 chr1 103537631 103537790 -139126563 - L2 LINE L2 -531 2783 2621 486 329 29 0 chr1 103539873 103540013 -139124340 - MER91A DNA MER1_type -11 185 42 237 280 0 27 chr1 103540062 103540137 -139124216 - L1ME LINE L1 -232 5889 5817 388 308 130 0 chr1 103540170 103540316 -139124037 + L1M4 LINE L1 4211 4375 -1771 204 274 0 0 chr1 103540488 103540539 -139123814 + CT-rich Low_complexity Low_complexity 4 54 0 749 137 34 112 chr1 103541157 103541362 -139122991 - MER53 DNA DNA 0 189 1 3236 242 223 5 chr1 103542589 103543746 -139120607 - L1MC4 LINE L1 -190 7852 6471 187 240 198 0 chr1 103544343 103544439 -139119914 - MIR3 SINE MIR 0 208 94 275 218 19 0 chr1 103545073 103545143 -139119210 + MIR SINE MIR 82 141 -67 234 175 138 75 chr1 103545390 103545470 -139118883 - MIR SINE MIR -68 194 110 564 168 33 0 chr1 103545919 103546136 -139118217 + CT-rich Low_complexity Low_complexity 1 224 0 218 335 81 67 chr1 103547708 103548141 -139116212 - L2 LINE L2 -7 3265 2827 393 261 222 17 chr1 103551073 103551249 -139113104 - MIR SINE MIR -19 243 32 1220 182 50 34 chr1 103552151 103552476 -139111877 - MER33 DNA MER1_type 0 324 1 505 207 0 54 chr1 103554973 103555084 -139109269 - L2 LINE L2 0 3313 3209 3055 239 55 80 chr1 103555084 103556281 -139108072 + L1MC4a LINE L1 5583 6749 -1059 308 242 45 0 chr1 103556387 103556453 -139107900 + L1MC4a LINE L1 6758 6826 -982 1920 129 0 14 chr1 103556472 103556758 -139107595 + AluJo SINE Alu 1 282 -30 27 0 0 0 chr1 103556758 103556785 -139107568 + AT_rich Low_complexity Low_complexity 1 27 0 1843 246 59 32 chr1 103556791 103557422 -139106931 + L1MC4 LINE L1 7276 7923 -119 499 271 108 19 chr1 103557510 103557779 -139106574 - L2 LINE L2 -105 3208 2916 271 275 175 0 chr1 103557853 103558013 -139106340 + L2 LINE L2 3119 3306 -7 188 311 27 14 chr1 103560227 103560301 -139104052 - L2 LINE L2 0 3313 3239 2136 140 0 0 chr1 103561064 103561357 -139102996 + AluSx SINE Alu 1 293 -19 2065 91 0 43 chr1 103561359 103561635 -139102718 + AluSq SINE Alu 1 264 -49 514 0 30 0 chr1 103561649 103561715 -139102638 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 1815 139 35 10 chr1 103561903 103562191 -139102162 - AluJo SINE Alu -7 305 11 295 189 24 89 chr1 103562826 103562876 -139101477 - L1ME2 LINE L1 -3 6181 6129 1520 178 0 43 chr1 103562876 103563157 -139101196 + AluJb SINE Alu 37 305 -7 295 189 24 89 chr1 103563157 103563210 -139101143 - L1ME2 LINE L1 -55 6129 6072 2629 146 6 26 chr1 103563234 103563701 -139100652 - L1MB3 LINE L1 -2 6181 5724 21 36 0 0 chr1 103563703 103563731 -139100622 + AT_rich Low_complexity Low_complexity 1 28 0 2142 129 0 3 chr1 103568056 103568358 -139095995 + AluSc SINE Alu 1 301 -8 1874 91 17 74 chr1 103569379 103569676 -139094677 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr1 103569677 103569702 -139094651 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 312 242 0 45 chr1 103570681 103570747 -139093606 + MER115 DNA AcHobo 177 239 -454 431 211 128 31 chr1 103570769 103571028 -139093325 + MER115 DNA AcHobo 354 670 -23 242 297 54 0 chr1 103571449 103571523 -139092830 - L2 LINE L2 -47 3266 3189 695 207 15 7 chr1 103571542 103571677 -139092676 - MER58B DNA MER1_type -15 326 191 204 216 39 0 chr1 103572731 103572782 -139091571 - MIR SINE MIR -17 245 193 181 175 70 0 chr1 103572842 103572899 -139091454 + GA-rich Low_complexity Low_complexity 6 66 0 198 339 18 9 chr1 103573010 103573119 -139091234 + L2 LINE L2 2745 2854 -460 253 209 44 77 chr1 103573238 103573329 -139091024 + L1M4 LINE L1 4914 5001 -1145 2166 219 117 13 chr1 103573427 103573984 -139090369 - L1MC4 LINE L1 -139 7903 7289 1617 214 198 6 chr1 103573979 103574297 -139090056 - L1MC4 LINE L1 -958 7084 6828 * 237 65 0 0 chr1 103574297 103574328 -139090025 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1617 214 198 6 chr1 103574328 103574519 -139089834 - L1MC4 LINE L1 -1214 6828 6477 316 186 398 0 chr1 103574596 103574709 -139089644 + MIR SINE MIR 13 170 -92 227 290 48 0 chr1 103574918 103574980 -139089373 + MER113 DNA MER1_type? 456 520 -1 282 281 96 55 chr1 103575132 103575278 -139089075 - MIR SINE MIR -50 212 61 40729 51 4 2 chr1 103575360 103580354 -139083999 + L1PA4 LINE L1 3 5004 -1142 5446 44 8 5 chr1 103580454 103581118 -139083235 + L1PA4 LINE L1 5487 6152 -3 2451 82 52 28 chr1 103581153 103581517 -139082836 + THE1C LTR MaLR 3 375 0 237 284 64 74 chr1 103581517 103581558 -139082795 + MIR SINE MIR 14 54 -208 1138 196 192 0 chr1 103581558 103581808 -139082545 - AluJo SINE Alu -3 299 2 237 284 64 74 chr1 103581808 103582057 -139082296 + MIR SINE MIR 54 262 0 2390 87 0 3 chr1 103582179 103582477 -139081876 + AluSg SINE Alu 2 298 -12 304 363 62 0 chr1 103582661 103582807 -139081546 - MIR SINE MIR -62 200 46 492 253 0 39 chr1 103584173 103584327 -139080026 + MER5A DNA MER1_type 41 188 -1 482 344 0 17 chr1 103585051 103585231 -139079122 + MER5B DNA MER1_type 2 178 0 23 68 0 0 chr1 103585621 103585665 -139078688 + AT_rich Low_complexity Low_complexity 1 44 0 330 233 40 80 chr1 103586513 103586689 -139077664 - L1M4 LINE L1 -1949 4197 4029 2093 90 25 4 chr1 103587787 103588118 -139076235 + AluSx SINE Alu 1 337 0 1722 253 121 80 chr1 103588324 103589622 -139074731 - L1M4 LINE L1 -1550 4596 3055 923 64 0 0 chr1 103589622 103589732 -139074621 - AluSq/x SINE Alu -202 110 1 1722 253 121 80 chr1 103589732 103590191 -139074162 - L1M4 LINE L1 -3091 3055 2616 279 0 0 0 chr1 103591072 103591103 -139073250 + (CA)n Simple_repeat Simple_repeat 2 32 0 483 177 10 0 chr1 103593142 103593238 -139071115 - L1MA7 LINE L1 -22 6269 6173 657 286 91 8 chr1 103593283 103593524 -139070829 + MIR SINE MIR 1 261 -1 561 135 108 243 chr1 103594036 103594295 -139070058 - MER58A DNA MER1_type 0 224 1 23 54 0 0 chr1 103594462 103594499 -139069854 + AT_rich Low_complexity Low_complexity 1 37 0 5333 104 18 5 chr1 103595397 103596166 -139068187 - MER4E LTR ERV1 0 779 1 227 179 30 60 chr1 103596456 103596523 -139067830 + MIR SINE MIR 196 260 -2 223 262 262 10 chr1 103596568 103596671 -139067682 + MIR SINE MIR 20 148 -114 222 136 0 0 chr1 103596956 103597000 -139067353 + (A)n Simple_repeat Simple_repeat 1 44 0 1509 35 0 0 chr1 103597056 103597226 -139067127 + AluY SINE Alu 17 186 -125 207 304 105 42 chr1 103597828 103598019 -139066334 - MIR SINE MIR -25 237 35 313 302 222 5 chr1 103598069 103598281 -139066072 - MIR SINE MIR 0 262 5 2314 91 3 3 chr1 103598723 103599020 -139065333 + AluSp SINE Alu 1 297 -16 275 270 90 21 chr1 103599186 103599346 -139065007 + L1ME4a LINE L1 5495 5660 -461 183 80 0 0 chr1 103599428 103599453 -139064900 + (TA)n Simple_repeat Simple_repeat 2 26 0 215 200 0 0 chr1 103599473 103599508 -139064845 + (CA)n Simple_repeat Simple_repeat 2 36 0 512 186 10 10 chr1 103599529 103599631 -139064722 - U13 snRNA snRNA 0 104 3 1064 84 0 0 chr1 103599780 103599911 -139064442 + AluY SINE Alu 1 131 -180 242 264 150 29 chr1 103649912 103650052 -139014301 + L1ME4a LINE L1 5822 5978 -143 330 233 108 23 chr1 103650089 103650218 -139014135 + L1ME4a LINE L1 5935 6074 -47 454 275 36 29 chr1 103650219 103650357 -139013996 - MER5B DNA MER1_type -16 162 24 2471 65 3 0 chr1 103651911 103652203 -139012150 + AluSg SINE Alu 3 295 -15 2229 88 17 0 chr1 103652388 103652685 -139011668 + AluSx SINE Alu 3 304 -8 26 30 0 0 chr1 103654282 103654315 -139010038 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr1 103654447 103654470 -139009883 + AT_rich Low_complexity Low_complexity 1 23 0 397 123 0 0 chr1 103654496 103654553 -139009800 - L2 LINE L2 0 3272 3216 2245 114 0 0 chr1 103654664 103654962 -139009391 + AluSx SINE Alu 1 298 -14 2431 82 0 0 chr1 103654962 103655256 -139009097 + AluSc SINE Alu 1 294 -15 2026 153 10 3 chr1 103655817 103656124 -139008229 - AluJb SINE Alu -3 309 1 1025 206 6 6 chr1 103656225 103656400 -139007953 - FAM SINE Alu 0 175 1 1093 172 30 35 chr1 103656470 103656652 -139007701 + L1ME2 LINE L1 5726 5908 -256 2244 127 0 0 chr1 103656652 103656959 -139007394 - AluJb SINE Alu -5 307 1 1093 172 30 35 chr1 103656959 103657008 -139007345 + L1ME2 LINE L1 5908 5956 -208 993 187 107 113 chr1 103657072 103657449 -139006904 - MLT1F1 LTR MaLR -163 404 13 2284 138 102 10 chr1 103657664 103658056 -139006297 - Tigger2a DNA MER2_type -6 428 1 328 239 0 0 chr1 103658447 103658518 -139005835 + MIR SINE MIR 176 246 -16 606 256 88 115 chr1 103658918 103659209 -139005144 - MLT1J LTR MaLR -4 507 231 2139 76 0 18 chr1 103659209 103659485 -139004868 + AluSx SINE Alu 23 293 -19 606 256 88 115 chr1 103659485 103659635 -139004718 - MLT1J LTR MaLR -280 231 78 231 36 0 0 chr1 103659861 103659889 -139004464 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2123 117 3 0 chr1 103661352 103661652 -139002701 - AluSg SINE Alu -9 301 1 183 204 0 0 chr1 103663290 103663334 -139001019 + GA-rich Low_complexity Low_complexity 1 44 0 803 143 71 13 chr1 103663556 103663710 -139000643 + FRAM SINE Alu 1 162 -14 264 326 43 29 chr1 103664449 103664587 -138999766 + L2 LINE L2 2181 2320 -994 243 308 105 8 chr1 103664749 103664882 -138999471 + L2 LINE L2 2568 2713 -601 828 154 0 0 chr1 103664883 103665000 -138999353 + FLAM_C SINE Alu 1 117 -26 1022 166 150 16 chr1 103665307 103665500 -138998853 - MER20 DNA MER1_type 0 219 1 801 191 0 15 chr1 103665890 103666026 -138998327 - AluJb SINE Alu -177 135 2 1675 144 3 88 chr1 103666027 103666368 -138997985 - AluJo SINE Alu 0 312 1 27 0 0 0 chr1 103666777 103666804 -138997549 + AT_rich Low_complexity Low_complexity 1 27 0 294 130 0 0 chr1 103666898 103666944 -138997409 + L2 LINE L2 3267 3312 -1 286 269 134 42 chr1 103668357 103668476 -138995877 + L2 LINE L2 3142 3271 -1 1162 143 298 16 chr1 103669036 103669358 -138994995 - Charlie1b DNA MER1_type -110 413 1 260 316 0 53 chr1 103669584 103669660 -138994693 + L2 LINE L2 3141 3212 -60 189 74 0 0 chr1 103670225 103670252 -138994101 + (TG)n Simple_repeat Simple_repeat 2 28 0 7104 51 36 0 chr1 103670676 103671749 -138992604 - L1PA7 LINE L1 -1 6153 5062 1775 126 100 0 chr1 103672080 103672351 -138992002 - AluSx SINE Alu -14 298 1 2346 83 10 3 chr1 103672514 103672815 -138991538 - AluSx SINE Alu -9 303 1 311 215 43 65 chr1 103673794 103673887 -138990466 + MER5B DNA MER1_type 9 99 -79 551 219 192 44 chr1 103675164 103675576 -138988777 + LTR33A LTR ERVL 1 523 0 183 259 56 19 chr1 103675607 103675661 -138988692 - L2 LINE L2 -3 3269 3214 306 287 102 9 chr1 103675756 103675864 -138988489 - L2 LINE L2 -4 3268 3151 229 227 91 0 chr1 103675953 103676019 -138988334 - MIR SINE MIR -5 257 186 454 129 207 35 chr1 103676069 103676185 -138988168 - MIR SINE MIR -56 206 71 1096 204 115 102 chr1 103676275 103676736 -138987617 + MLT1J LTR MaLR 42 508 -3 343 265 140 7 chr1 103677227 103677363 -138986990 + MIR SINE MIR 106 259 -3 1960 51 13 0 chr1 103677551 103677786 -138986567 - AluSp SINE Alu -2 311 74 44280 44 4 2 chr1 103677804 103683944 -138980409 - L1PA4 LINE L1 0 6155 2 615 165 0 0 chr1 103683945 103684030 -138980323 - AluSp SINE Alu -227 86 2 375 246 76 8 chr1 103684033 103684151 -138980202 + L2 LINE L2 2153 2278 -1036 302 170 0 0 chr1 103684202 103684255 -138980098 - L2 LINE L2 0 3272 3220 * 858 308 84 38 chr1 103684251 103684784 -138979569 + L2 LINE L2 2279 2836 -478 2325 91 3 3 chr1 103685041 103685338 -138979015 - AluSp SINE Alu -16 297 1 21 36 0 0 chr1 103685348 103685376 -138978977 + AT_rich Low_complexity Low_complexity 1 28 0 231 279 35 12 chr1 103685465 103685551 -138978802 - HAL1b LINE L1 -77 1271 1184 463 241 68 43 chr1 103685593 103685853 -138978500 - L1MC4a LINE L1 -361 5809 5653 305 195 109 155 chr1 103685881 103686325 -138978028 + L1 LINE L1 3770 4272 -1874 4391 124 35 40 chr1 103686325 103686780 -138977573 - L1MB7 LINE L1 -19 6165 5714 1931 125 0 37 chr1 103686780 103687075 -138977278 + AluJb SINE Alu 1 284 -28 4391 124 35 40 chr1 103687075 103687363 -138976990 - L1MB7 LINE L1 -470 5714 5426 305 195 109 155 chr1 103687363 103687536 -138976817 + L1 LINE L1 4272 4451 -1695 550 120 0 20 chr1 103687653 103687753 -138976600 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 1927 139 0 0 chr1 103687756 103688029 -138976324 - AluSx SINE Alu -39 273 1 942 221 55 0 chr1 103688151 103688368 -138975985 + MIR SINE MIR 34 262 0 8191 52 47 0 chr1 103688442 103689404 -138974949 + LTR13 LTR ERVK 1 1007 0 2244 109 0 3 chr1 103689559 103689853 -138974500 + AluSx SINE Alu 1 293 -19 1127 245 43 55 chr1 103690203 103690310 -138974043 + L1MC/D LINE L1 5313 5420 -2388 1714 183 0 3 chr1 103690310 103690594 -138973759 + AluJo SINE Alu 3 285 -27 1127 245 43 55 chr1 103690594 103690992 -138973361 + L1MC/D LINE L1 5420 5812 -1996 349 275 46 23 chr1 103691446 103691577 -138972776 + MER5A DNA MER1_type 52 185 -4 243 0 0 0 chr1 103691753 103691780 -138972573 + (CCG)n Simple_repeat Simple_repeat 3 29 0 435 94 0 141 chr1 103692019 103692104 -138972249 - tRNA-Arg-AGA tRNA tRNA -3 73 1 21 0 0 0 chr1 103692644 103692665 -138971688 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 103692920 103692942 -138971411 + GC_rich Low_complexity Low_complexity 1 22 0 291 279 64 70 chr1 103693499 103693671 -138970682 - MIR SINE MIR -41 221 51 1753 215 39 14 chr1 103693673 103694087 -138970266 - LTR40c LTR ERVL -13 452 29 360 0 0 0 chr1 103694174 103694214 -138970139 + (TA)n Simple_repeat Simple_repeat 1 40 0 1197 139 0 0 chr1 103694804 103694970 -138969383 + FRAM SINE Alu 1 166 0 2093 124 34 0 chr1 103695349 103695640 -138968713 - AluSg SINE Alu -9 301 1 391 263 273 10 chr1 103696102 103696300 -138968053 + MIR SINE MIR 12 261 -1 2051 119 0 20 chr1 103697235 103697528 -138966825 + AluSx SINE Alu 11 297 -15 242 289 141 8 chr1 103698294 103698415 -138965938 - L2 LINE L2 0 3272 3136 246 296 17 111 chr1 103698638 103698810 -138965543 + L2 LINE L2 3117 3272 0 196 307 47 73 chr1 103698834 103698984 -138965369 + L2 LINE L2 3161 3306 -7 387 259 26 17 chr1 103699263 103699379 -138964974 - MIR SINE MIR -36 226 110 642 194 0 16 chr1 103699530 103699654 -138964699 + MER5B DNA MER1_type 51 172 -6 484 224 184 13 chr1 103699677 103699829 -138964524 + MER5A DNA MER1_type 12 189 0 2095 97 56 0 chr1 103700367 103700655 -138963698 - AluSq SINE Alu -8 305 2 2712 157 16 7 chr1 103701109 103701561 -138962792 + MSTB2 LTR MaLR 1 456 -1 385 107 0 0 chr1 103702373 103702429 -138961924 - MSTA LTR MaLR 0 428 373 1053 120 7 0 chr1 103702432 103702582 -138961771 - AluSg/x SINE Alu -2 310 160 2272 101 125 22 chr1 103702588 103702996 -138961357 - LTR7 LTR ERV1 0 450 1 2755 93 48 12 chr1 103702996 103703417 -138960936 - HERVH LTR ERV1 0 7713 7278 8323 126 5 5 chr1 103703435 103705289 -138959064 - HERVH LTR ERV1 -1841 5250 3357 12780 144 17 35 chr1 103705289 103705573 -138958780 - HERVH LTR ERV1 -4883 2830 2542 5917 145 24 32 chr1 103705573 103706653 -138957700 + MER11C LTR ERVK 1 1071 0 12780 144 17 35 chr1 103706653 103708929 -138955424 - HERVH LTR ERV1 -5171 2542 1 2191 119 112 17 chr1 103708929 103709340 -138955013 - LTR7 LTR ERV1 0 450 1 719 183 15 0 chr1 103709365 103709496 -138954857 - FLAM_C SINE Alu 0 133 1 2707 115 18 5 chr1 103709496 103709879 -138954474 - MSTA LTR MaLR -40 388 1 821 123 0 8 chr1 103709904 103710026 -138954327 - MER39 LTR ERV1 0 707 587 384 96 0 0 chr1 103710026 103710078 -138954275 + AluJb SINE Alu 1 52 -249 1558 240 62 79 chr1 103710084 103710733 -138953620 + LTR9B LTR ERV1 7 644 0 1747 117 12 0 chr1 103710734 103710974 -138953379 + AluJb SINE Alu 50 292 -20 2344 139 76 13 chr1 103710974 103711370 -138952983 - MER39 LTR ERV1 -115 592 172 1233 146 0 34 chr1 103711372 103711578 -138952775 - AluJo SINE Alu -30 282 84 611 195 0 9 chr1 103711579 103711692 -138952661 - FRAM SINE Alu -64 112 1 1101 92 86 6 chr1 103711692 103711866 -138952487 - MER39 LTR ERV1 -519 188 1 279 263 0 0 chr1 103711903 103711983 -138952370 + CT-rich Low_complexity Low_complexity 2 81 0 375 301 92 13 chr1 103712015 103712168 -138952185 + MIR3 SINE MIR 37 201 -7 220 316 60 26 chr1 103712552 103712669 -138951684 - L2 LINE L2 -1 3271 3151 228 182 0 0 chr1 103712839 103712883 -138951470 + (CA)n Simple_repeat Simple_repeat 2 45 0 192 269 109 17 chr1 103713306 103713425 -138950928 - L2 LINE L2 -244 3028 2899 223 310 0 0 chr1 103713578 103713636 -138950717 + CT-rich Low_complexity Low_complexity 2 59 0 184 178 367 56 chr1 103715539 103715629 -138948724 - L2 LINE L2 -5 3308 3191 2316 98 3 0 chr1 103715679 103715985 -138948368 + AluSc SINE Alu 1 307 -2 371 257 146 14 chr1 103716377 103716763 -138947590 - MLT1L LTR MaLR -7 608 153 2110 119 7 3 chr1 103717038 103717333 -138947020 + AluSq SINE Alu 1 296 -17 1128 95 42 12 chr1 103717333 103717501 -138946852 + AluSg/x SINE Alu 132 304 -6 385 198 38 173 chr1 103717764 103718001 -138946352 + MIR SINE MIR 58 262 0 494 167 13 0 chr1 103718576 103718654 -138945699 + MER21B LTR ERV1 12 90 -773 2892 247 35 27 chr1 103718696 103719472 -138944881 + MER21B LTR ERV1 25 806 -57 2118 110 3 0 chr1 103719624 103719952 -138944401 + L1PA15 LINE L1 5870 6198 0 24 0 0 0 chr1 103720110 103720134 -138944219 + AT_rich Low_complexity Low_complexity 1 24 0 2183 116 3 0 chr1 103720313 103720606 -138943747 + AluSc SINE Alu 1 294 -15 320 229 42 10 chr1 103720729 103720825 -138943528 - MIR SINE MIR -2 260 162 473 233 122 63 chr1 103720875 103721064 -138943289 + L2 LINE L2 3108 3307 -6 * 554 191 53 8 chr1 103721060 103721191 -138943162 - MIR SINE MIR -95 167 31 200 305 68 45 chr1 103721433 103721610 -138942743 - L2 LINE L2 -11 3302 3122 516 297 43 30 chr1 103722074 103722306 -138942047 + MIR SINE MIR 13 247 -15 2421 97 3 0 chr1 103722977 103723285 -138941068 - AluSg SINE Alu -1 309 1 374 274 12 0 chr1 103723495 103723579 -138940774 - L2 LINE L2 -28 3244 3160 234 301 195 0 chr1 103724551 103724674 -138939679 + L2 LINE L2 3117 3263 -9 385 223 64 11 chr1 103725296 103725390 -138938963 - MIR SINE MIR -128 134 36 298 57 0 0 chr1 103725436 103725471 -138938882 - U2 snRNA snRNA -153 35 1 2036 217 69 55 chr1 103725532 103726201 -138938152 + L1MC4 LINE L1 7365 8042 0 331 167 122 33 chr1 103726816 103726906 -138937447 - MER5A DNA MER1_type -83 106 9 741 256 45 15 chr1 103727681 103727880 -138936473 + MER63A DNA MER1_type 1 205 -5 367 203 27 0 chr1 103728744 103728818 -138935535 + MIR3 SINE MIR 87 162 -46 2197 85 41 14 chr1 103729464 103729758 -138934595 - AluSx SINE Alu -10 302 1 2339 116 0 0 chr1 103729880 103730190 -138934163 - AluSx SINE Alu -1 311 2 261 243 14 0 chr1 103730751 103730825 -138933528 - HAL1 LINE L1 -355 2152 2078 629 250 49 11 chr1 103731142 103731326 -138933027 - HAL1 LINE L1 -761 1746 1556 386 211 44 9 chr1 103731329 103731443 -138932910 - HAL1 LINE L1 -1040 1467 1350 656 164 276 26 chr1 103731451 103731603 -138932750 + LTR48B LTR ERV1 1 116 -528 1417 186 29 58 chr1 103731604 103731916 -138932437 - AluJb SINE Alu 0 312 10 2159 158 97 68 chr1 103731917 103732505 -138931848 + LTR48 LTR ERV1 183 787 0 1643 183 46 0 chr1 103732557 103732841 -138931512 - AluJb SINE Alu -15 297 1 1858 185 114 17 chr1 103732864 103733275 -138931078 + LTR48 LTR ERV1 1 451 -336 868 189 97 31 chr1 103733303 103733530 -138930823 + LTR48 LTR ERV1 544 785 -2 766 308 33 45 chr1 103733532 103734048 -138930305 - HAL1 LINE L1 -1235 1272 763 278 303 30 0 chr1 103734588 103734687 -138929666 - L1ME LINE L1 -403 5718 5617 1035 165 5 48 chr1 103734693 103734899 -138929454 + L1ME LINE L1 5580 5776 -390 2881 164 2 2 chr1 103734903 103735348 -138929005 + MER44D DNA MER2_type 1 500 -105 703 227 0 0 chr1 103735519 103735647 -138928706 - FLAM_C SINE Alu -14 129 2 253 235 70 61 chr1 103735835 103735950 -138928403 + MER4D LTR ERV1 712 827 -45 1480 189 0 84 chr1 103737344 103737516 -138926837 - AluJo SINE Alu -7 305 173 2212 96 3 53 chr1 103737516 103737839 -138926514 - AluSg SINE Alu -3 307 1 1480 189 0 84 chr1 103737839 103737999 -138926354 - AluJo SINE Alu -139 173 1 21 0 0 0 chr1 103738941 103738962 -138925391 + AT_rich Low_complexity Low_complexity 1 21 0 2103 120 0 7 chr1 103739074 103739385 -138924968 - AluSx SINE Alu 0 309 1 899 321 55 33 chr1 103739542 103740000 -138924353 + MER4D-int LTR ERV1 119 586 -4061 406 307 12 19 chr1 103740998 103741162 -138923191 + HERVR LTR ERV1 4068 4217 -3175 23 0 0 0 chr1 103741310 103741333 -138923020 + AT_rich Low_complexity Low_complexity 1 23 0 36879 28 17 1 chr1 103742995 103749024 -138915329 + L1PA2 LINE L1 2 6155 0 210 162 0 0 chr1 103749027 103749064 -138915289 + A-rich Low_complexity Low_complexity 1 37 0 1159 188 129 33 chr1 103750401 103750673 -138913680 + AluJo SINE Alu 1 298 -4 183 80 0 0 chr1 103750691 103750716 -138913637 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 5312 205 16 11 chr1 103750986 103752372 -138911981 + L1 LINE L1 1769 3155 -2991 203 275 100 12 chr1 103752644 103752724 -138911629 + MER5B DNA MER1_type 1 87 -91 2234 243 46 36 chr1 103753079 103753457 -138910896 - MLT1G1 LTR MaLR 0 595 207 2868 13 0 0 chr1 103753457 103753765 -138910588 - AluY SINE Alu -3 308 1 2234 243 46 36 chr1 103753765 103753974 -138910379 - MLT1G1 LTR MaLR -388 207 2 520 267 77 36 chr1 103754167 103754388 -138909965 + MER102b DNA MER1_type 103 332 -9 1400 248 163 38 chr1 103755406 103755935 -138908418 - MLT1G1 LTR MaLR 0 595 1 331 335 139 0 chr1 103755969 103756163 -138908190 - L1ME3A LINE L1 -219 5951 5731 751 211 74 17 chr1 103756295 103756470 -138907883 + MER20 DNA MER1_type 34 218 -1 692 263 83 24 chr1 103756476 103756942 -138907411 - L1ME3A LINE L1 -511 5651 5067 427 279 167 0 chr1 103757994 103758209 -138906144 + MIR SINE MIR 11 261 -1 1037 185 78 0 chr1 103758301 103758506 -138905847 + MER58 DNA MER1_type 4 224 -117 727 271 110 24 chr1 103760062 103760390 -138903963 + L2 LINE L2 2958 3313 0 1616 221 54 72 chr1 103761204 103761947 -138902406 + L1MC5 LINE L1 6414 7005 -803 988 140 18 37 chr1 103761952 103762116 -138902237 + AluJo SINE Alu 1 161 -151 1075 115 0 11 chr1 103762116 103762298 -138902055 + (GGA)n Simple_repeat Simple_repeat 1 180 0 426 217 126 59 chr1 103762320 103762388 -138901965 + L1MC5 LINE L1 7143 7205 -756 1790 193 84 25 chr1 103762388 103762829 -138901524 - MLT1C LTR MaLR 0 467 1 426 217 126 59 chr1 103762829 103763436 -138900917 + L1MC5 LINE L1 7205 7915 -46 334 288 116 25 chr1 103763909 103764107 -138900246 - L1MC4a LINE L1 -1914 5894 5679 2287 94 0 7 chr1 103765177 103765474 -138898879 - AluSc SINE Alu -14 295 1 209 317 29 39 chr1 103766635 103766739 -138897614 + MIR3 SINE MIR 6 108 -100 2197 119 0 7 chr1 103766773 103767083 -138897270 + AluSc SINE Alu 1 308 -1 303 306 151 5 chr1 103767157 103767356 -138896997 + L3 LINE CR1 834 1061 -516 392 294 98 26 chr1 103767364 103767558 -138896795 + L2 LINE L2 2640 2847 -467 457 310 113 26 chr1 103768387 103768616 -138895737 + MIR SINE MIR 14 262 0 234 238 0 16 chr1 103770128 103770191 -138894162 - L3b LINE CR1 -225 1358 1297 477 0 0 0 chr1 103770268 103770321 -138894032 + (CA)n Simple_repeat Simple_repeat 2 54 0 264 30 0 0 chr1 103771386 103771419 -138892934 + (CA)n Simple_repeat Simple_repeat 2 34 0 1604 87 57 0 chr1 103771850 103772080 -138892273 + MER75B DNA T2_type 1 243 0 2153 137 0 3 chr1 103772136 103772436 -138891917 - AluJb SINE Alu -13 299 1 1650 179 42 71 chr1 103773531 103773712 -138890641 + L1MA10 LINE L1 5940 6125 -209 2258 96 14 0 chr1 103773712 103774004 -138890349 + AluSg SINE Alu 1 296 -14 1650 179 42 71 chr1 103774004 103774229 -138890124 + L1MA10 LINE L1 6125 6334 0 344 269 98 36 chr1 103775685 103775878 -138888475 + L2 LINE L2 3089 3293 -20 5221 116 45 23 chr1 103775887 103776606 -138887747 + L1PA16 LINE L1 5048 5799 -367 333 0 0 0 chr1 103776606 103776643 -138887710 + (TA)n Simple_repeat Simple_repeat 1 37 0 5221 116 45 23 chr1 103776643 103777011 -138887342 + L1PA16 LINE L1 5799 6157 -9 667 139 120 0 chr1 103777398 103777506 -138886847 + FLAM_C SINE Alu 2 122 -21 31 44 0 0 chr1 103777506 103777551 -138886802 + AT_rich Low_complexity Low_complexity 1 45 0 838 207 30 0 chr1 103777841 103778010 -138886343 - MER45A DNA AcHobo 0 178 5 607 304 142 15 chr1 103778075 103778407 -138885946 + MLT1J LTR MaLR 8 381 -130 282 160 0 0 chr1 103779120 103779170 -138885183 + (CA)n Simple_repeat Simple_repeat 1 50 0 203 293 131 20 chr1 103779483 103779582 -138884771 - MIR SINE MIR -75 133 24 199 313 119 37 chr1 103781202 103781336 -138883017 - L2 LINE L2 -21 3251 3107 277 350 17 8 chr1 103781660 103781780 -138882573 - MER5A DNA MER1_type -3 186 66 2111 119 3 23 chr1 103783404 103783706 -138880647 + AluSx SINE Alu 1 296 -16 251 231 192 39 chr1 103784173 103784277 -138880076 - MIR SINE MIR -109 153 34 2411 149 23 41 chr1 103784602 103784777 -138879576 + MSTA LTR MaLR 1 178 -250 2316 88 0 3 chr1 103784777 103785101 -138879252 - AluSx SINE Alu 0 323 1 2411 149 23 41 chr1 103785101 103785360 -138878993 + MSTA LTR MaLR 178 428 0 503 264 31 0 chr1 103785684 103785813 -138878540 - MIR SINE MIR -82 180 48 968 194 0 0 chr1 103785834 103785999 -138878354 - FRAM SINE Alu -1 165 1 252 0 0 0 chr1 103786036 103786064 -138878289 + (TTTAA)n Simple_repeat Simple_repeat 2 29 0 5472 154 30 20 chr1 103786423 103787370 -138876983 + L1M4c LINE L1 14 969 -5415 2297 109 0 0 chr1 103787370 103787664 -138876689 + AluSx SINE Alu 1 294 -18 243 206 14 110 chr1 103788236 103788309 -138876044 + MIR3 SINE MIR 122 187 -21 1911 178 26 32 chr1 103788555 103788903 -138875450 + MLT1A1 LTR MaLR 10 355 -10 5145 124 68 7 chr1 103789204 103790034 -138874319 - Tigger3(Golem) DNA MER2_type -1 3028 2149 317 257 17 91 chr1 103790111 103790286 -138874067 + L2 LINE L2 3062 3223 -90 2341 209 65 104 chr1 103790288 103791057 -138873296 + MER21B LTR ERV1 1 739 -124 297 220 0 0 chr1 103791098 103791157 -138873196 + L2 LINE L2 3255 3313 0 714 304 13 21 chr1 103794630 103794867 -138869486 + MIR SINE MIR 18 252 -10 21 0 0 0 chr1 103795293 103795314 -138869039 + AT_rich Low_complexity Low_complexity 1 21 0 467 259 7 14 chr1 103795828 103795971 -138868382 - MIR SINE MIR -30 232 91 190 260 20 0 chr1 103796054 103796104 -138868249 - L2 LINE L2 -337 2976 2926 183 292 42 0 chr1 103797013 103797085 -138867268 - L2 LINE L2 0 3272 3198 570 281 103 0 chr1 103797140 103797343 -138867010 + MIR SINE MIR 18 241 -21 247 307 39 39 chr1 103797372 103797550 -138866803 - L2 LINE L2 -182 3090 2914 180 333 121 10 chr1 103797838 103797937 -138866416 + L2 LINE L2 3151 3260 -12 810 217 6 11 chr1 103798191 103798371 -138865982 + AluJo SINE Alu 118 291 -21 418 336 0 8 chr1 103798756 103798878 -138865475 - MIR SINE MIR -58 150 30 1437 169 0 0 chr1 103799022 103799258 -138865095 - MER46A DNA MER2_type 0 236 1 221 301 129 81 chr1 103799347 103799656 -138864697 - L2 LINE L2 -4 3268 2945 200 331 66 22 chr1 103799828 103799964 -138864389 - L2 LINE L2 -869 2445 2304 399 132 0 13 chr1 103801598 103801674 -138862679 - L1M2 LINE L1 -5146 1703 1629 10258 159 32 40 chr1 103801976 103803813 -138860540 + L1MA4A LINE L1 827 2646 -4202 2327 78 0 39 chr1 103803813 103804120 -138860233 + AluY SINE Alu 1 295 -16 10258 159 32 40 chr1 103804120 103804466 -138859887 + L1MA4A LINE L1 2646 2993 -3855 832 138 39 0 chr1 103804466 103804596 -138859757 + AluJo SINE Alu 1 135 -177 6039 179 22 14 chr1 103804634 103805365 -138858988 + L1MA4A LINE L1 3012 3761 -3087 2349 117 0 0 chr1 103805365 103805672 -138858681 - AluSx SINE Alu -5 307 1 6039 179 22 14 chr1 103805672 103806329 -138858024 + L1MA4A LINE L1 3761 4411 -2437 7059 94 6 20 chr1 103806330 103807403 -138856950 + MER11C LTR ERVK 1 1058 -13 7447 138 65 45 chr1 103807419 103807707 -138856646 + L1MA4A LINE L1 4407 4688 -2317 1913 136 57 35 chr1 103807707 103808074 -138856279 + THE1C LTR MaLR 1 375 0 9534 129 17 37 chr1 103808076 103809686 -138854667 + THE1C-int LTR MaLR 3 1580 0 1867 136 65 44 chr1 103809686 103810053 -138854300 + THE1C LTR MaLR 1 375 0 7447 138 65 45 chr1 103810053 103811971 -138852382 + L1MA4A LINE L1 4688 6692 -313 2148 117 3 20 chr1 103811971 103812271 -138852082 + AluSg SINE Alu 1 295 -15 7447 138 65 45 chr1 103812271 103812574 -138851779 + L1MA4A LINE L1 6692 6988 -17 1910 85 88 4 chr1 103813078 103813361 -138850992 - AluSg SINE Alu 0 305 1 5345 147 3 12 chr1 103813361 103813631 -138850722 + L1MA6 LINE L1 5338 5609 -691 1967 120 27 17 chr1 103813631 103813930 -138850423 + AluJb SINE Alu 1 302 -10 5345 147 3 12 chr1 103813930 103814628 -138849725 + L1MA6 LINE L1 5609 6297 -3 357 272 24 16 chr1 103814691 103814816 -138849537 + L1MB8 LINE L1 5905 6030 -148 1853 154 14 0 chr1 103814816 103815102 -138849251 - AluSx SINE Alu -22 290 1 1857 169 0 25 chr1 103815317 103815636 -138848717 - AluJo SINE Alu -1 311 1 243 329 27 34 chr1 103815774 103815920 -138848433 - MIR3 SINE MIR -45 163 19 2564 64 0 0 chr1 103815933 103816244 -138848109 - AluY SINE Alu 0 311 1 708 239 63 63 chr1 103816755 103816899 -138847454 - MIR SINE MIR -18 244 98 2020 161 0 0 chr1 103816899 103817203 -138847150 + AluSx SINE Alu 1 304 -8 708 239 63 63 chr1 103817203 103817297 -138847056 - MIR SINE MIR -163 99 6 297 255 121 6 chr1 103817648 103817805 -138846548 - LTR67 LTR ERVL -2 555 381 4214 50 2 0 chr1 103817843 103818387 -138845966 - L1PA5 LINE L1 -1580 4566 4022 7149 50 6 0 chr1 103818387 103819972 -138844381 + L1PA5 LINE L1 4560 6149 -5 426 307 137 11 chr1 103820836 103821255 -138843098 + L1MC4a LINE L1 5434 5801 -369 1977 142 18 0 chr1 103822693 103823024 -138841329 - Tigger1 DNA MER2_type 0 2418 2082 * 5598 96 20 1 chr1 103823018 103823859 -138840494 - Tigger1 DNA MER2_type -652 1766 910 799 154 0 29 chr1 103824670 103824806 -138839547 + FLAM_C SINE Alu 1 132 -1 14767 203 12 12 chr1 103825359 103825415 -138838938 - L1PB1 LINE L1 0 6151 6096 2338 105 0 10 chr1 103825415 103825729 -138838624 - AluSx SINE Alu 0 312 2 14767 203 12 12 chr1 103825729 103826052 -138838301 - L1PB1 LINE L1 -55 6096 5774 378 0 0 0 chr1 103826052 103826094 -138838259 + (TA)n Simple_repeat Simple_repeat 2 43 0 14767 203 12 12 chr1 103826094 103830451 -138833902 - L1PB1 LINE L1 -377 5774 1436 2078 140 32 9 chr1 103830451 103830794 -138833559 - MSTA LTR MaLR -77 351 1 1890 70 147 4 chr1 103831720 103831979 -138832374 - AluSq SINE Alu -17 296 1 1821 143 10 23 chr1 103832591 103832891 -138831462 - AluJb SINE Alu -16 296 1 1355 168 0 0 chr1 103833983 103834192 -138830161 - AluJb SINE Alu -17 295 87 638 231 0 8 chr1 103834970 103835104 -138829249 - FLAM_A SINE Alu 0 133 1 1727 161 36 10 chr1 103835240 103835544 -138828809 - AluJb SINE Alu 0 312 1 2043 121 11 0 chr1 103836515 103836827 -138827526 + AluSx SINE Alu 1 315 0 195 42 0 0 chr1 103837685 103837709 -138826644 + (CAG)n Simple_repeat Simple_repeat 1 24 0 750 153 8 0 chr1 103838141 103838259 -138826094 - FLAM_C SINE Alu -22 121 3 252 0 0 0 chr1 103838272 103838300 -138826053 + (A)n Simple_repeat Simple_repeat 1 28 0 2307 114 0 0 chr1 103838390 103838689 -138825664 + AluSx SINE Alu 1 299 -13 434 349 47 0 chr1 103839332 103839481 -138824872 + L2 LINE L2 3117 3272 0 2385 106 0 6 chr1 103839855 103840166 -138824187 + AluSx SINE Alu 1 309 -3 1760 191 3 3 chr1 103840569 103840873 -138823480 - AluJo SINE Alu -8 304 1 231 316 58 23 chr1 103841291 103841438 -138822915 + MIR SINE MIR 5 216 -46 223 220 55 44 chr1 103841534 103841625 -138822728 - MIR SINE MIR -20 242 151 283 136 11 148 chr1 103841626 103841678 -138822675 - MER116 DNA Mariner -3 77 40 2477 63 0 7 chr1 103841678 103841980 -138822373 + AluY SINE Alu 3 302 -9 283 136 11 148 chr1 103841980 103842015 -138822338 - MER116 DNA Mariner -40 40 2 189 380 41 25 chr1 103842033 103842154 -138822199 - MIR SINE MIR -135 127 5 15044 78 12 10 chr1 103842319 103848363 -138815990 + L1PA6 LINE L1 9 6151 -3 342 297 120 75 chr1 103849462 103850029 -138814324 + L1M2 LINE L1 535 1329 -5520 22 70 0 0 chr1 103850079 103850122 -138814231 + GC_rich Low_complexity Low_complexity 1 43 0 282 67 0 22 chr1 103850573 103850618 -138813735 + L1MA4A LINE L1 6195 6238 -65 500 99 0 0 chr1 103850673 103850754 -138813599 + L1MA4A LINE L1 6219 6299 -4 329 176 95 0 chr1 103850971 103851045 -138813308 + MIR SINE MIR 133 213 -49 322 260 71 26 chr1 103851551 103851705 -138812648 + MER112 DNA MER1_type 2 162 -98 407 307 120 13 chr1 103851882 103852107 -138812246 + L3 LINE CR1 1312 1560 -17 425 254 98 17 chr1 103853196 103853432 -138810921 - MER112 DNA MER1_type 0 256 2 333 343 46 46 chr1 103853599 103853774 -138810579 - MER5A DNA MER1_type -2 187 13 215 254 102 0 chr1 103853808 103853867 -138810486 + MIR SINE MIR 3 67 -195 1993 149 10 7 chr1 103853907 103854208 -138810145 - AluSx SINE Alu -10 302 1 2178 116 0 23 chr1 103855482 103855792 -138808561 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr1 103855792 103855821 -138808532 + AT_rich Low_complexity Low_complexity 1 29 0 3825 146 11 63 chr1 103855829 103856612 -138807741 + L1MC1 LINE L1 5591 6333 0 2360 53 0 4 chr1 103856622 103856936 -138807417 + AluY SINE Alu 1 313 0 201 39 0 0 chr1 103857223 103857249 -138807104 + (CA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr1 103857389 103857417 -138806936 + AT_rich Low_complexity Low_complexity 1 28 0 191 330 126 0 chr1 103857959 103858062 -138806291 - L2 LINE L2 -3 3269 3154 527 282 133 30 chr1 103858063 103858297 -138806056 + MIR SINE MIR 3 260 -2 200 200 25 0 chr1 103858300 103858340 -138806013 + (TTG)n Simple_repeat Simple_repeat 1 41 0 629 244 141 33 chr1 103858405 103858618 -138805735 - MIR SINE MIR -1 261 26 444 275 113 88 chr1 103859278 103859711 -138804642 + L1ME LINE L1 5376 5819 -302 2016 94 58 0 chr1 103859727 103860004 -138804349 + AluSx SINE Alu 1 293 -19 1496 164 97 4 chr1 103860198 103860466 -138803887 + AluJo SINE Alu 1 293 -19 808 161 0 0 chr1 103860468 103860586 -138803767 + FLAM_C SINE Alu 9 126 -17 21 0 0 0 chr1 103860631 103860652 -138803701 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr1 103860770 103860796 -138803557 + (T)n Simple_repeat Simple_repeat 1 26 0 2480 91 0 0 chr1 103862839 103863146 -138801207 + AluSg SINE Alu 1 307 -3 2380 92 0 3 chr1 103863784 103864087 -138800266 + AluSx SINE Alu 1 302 -10 1885 167 0 3 chr1 103864828 103865122 -138799231 - AluJb SINE Alu -17 295 3 262 312 159 0 chr1 103865761 103865918 -138798435 - MIR SINE MIR -34 228 47 775 199 61 5 chr1 103867074 103867258 -138797095 + MIR SINE MIR 42 231 -31 181 167 0 0 chr1 103867261 103867291 -138797062 - MIR SINE MIR -3 259 230 1230 294 81 21 chr1 103867423 103867893 -138796460 - L2 LINE L2 0 3313 2816 1938 140 6 37 chr1 103867914 103868235 -138796118 + AluJo SINE Alu 2 312 0 347 207 50 71 chr1 103868248 103868388 -138795965 + L1ME4a LINE L1 5518 5654 -467 2253 104 7 0 chr1 103868890 103869179 -138795174 + AluSx SINE Alu 1 291 -21 25 0 0 0 chr1 103869179 103869204 -138795149 + AT_rich Low_complexity Low_complexity 1 25 0 423 254 75 40 chr1 103869204 103869432 -138794921 + L1ME4a LINE L1 5691 5926 -195 328 281 96 55 chr1 103869854 103870000 -138794353 - MIR SINE MIR -50 212 61 40853 51 5 2 chr1 103870082 103876214 -138788139 + L1PA4 LINE L1 3 6152 -3 2413 80 30 36 chr1 103876249 103876613 -138787740 + THE1B LTR MaLR 3 364 0 288 254 38 182 chr1 103876613 103876654 -138787699 + MIR SINE MIR 14 59 -203 1119 204 192 0 chr1 103876654 103876904 -138787449 - AluJb SINE Alu -3 299 2 288 254 38 182 chr1 103876904 103877153 -138787200 + MIR SINE MIR 59 262 0 2368 87 0 3 chr1 103877275 103877573 -138786780 + AluSg SINE Alu 2 298 -12 372 344 108 0 chr1 103877717 103877903 -138786450 - MIR SINE MIR -11 251 46 514 260 0 39 chr1 103879255 103879409 -138784944 + MER5A DNA MER1_type 41 188 -1 187 279 0 33 chr1 103880054 103880115 -138784238 - L2 LINE L2 -15 3257 3199 516 356 0 17 chr1 103880133 103880313 -138784040 + MER5B DNA MER1_type 2 178 0 23 68 0 0 chr1 103880702 103880746 -138783607 + AT_rich Low_complexity Low_complexity 1 44 0 243 250 42 71 chr1 103881602 103881770 -138782583 - L1M4 LINE L1 -1955 4191 4029 463 167 10 0 chr1 103882661 103882757 -138781596 - L1MA7 LINE L1 -22 6269 6173 736 286 91 8 chr1 103882802 103883043 -138781310 + MIR SINE MIR 1 261 -1 550 131 108 246 chr1 103883555 103883815 -138780538 - MER58A DNA MER1_type 0 224 1 23 54 0 0 chr1 103883982 103884019 -138780334 + AT_rich Low_complexity Low_complexity 1 37 0 5353 104 17 5 chr1 103884917 103885687 -138778666 - MER4E LTR ERV1 0 779 1 228 179 30 60 chr1 103885977 103886044 -138778309 + MIR SINE MIR 196 260 -2 224 262 262 10 chr1 103886089 103886192 -138778161 + MIR SINE MIR 20 148 -114 222 136 0 0 chr1 103886477 103886521 -138777832 + (A)n Simple_repeat Simple_repeat 1 44 0 1753 35 0 0 chr1 103886577 103886777 -138777576 + AluY SINE Alu 17 216 -95 30087 70 15 6 chr1 103886877 103888518 -138775835 - L1HS LINE L1 -5 6150 4525 2281 26 22 4 chr1 103888518 103888789 -138775564 - AluY SINE Alu -9 302 27 30087 70 15 6 chr1 103888789 103892249 -138772104 - L1HS LINE L1 -1630 4525 1002 459 232 61 0 chr1 103892602 103892701 -138771652 - L2 LINE L2 -2 3270 3166 336 331 29 22 chr1 103893128 103893267 -138771086 - MIR3 SINE MIR -56 152 13 348 153 42 0 chr1 103894959 103895031 -138769322 - L1M4 LINE L1 -1134 5012 4938 2232 228 89 17 chr1 103895056 103895752 -138768601 - L1ME3A LINE L1 -9 6161 5416 765 177 76 0 chr1 103895775 103895933 -138768420 - MLT1A1 LTR MaLR -47 318 149 2105 124 0 7 chr1 103895935 103896241 -138768112 - AluSg SINE Alu -6 304 1 292 287 130 9 chr1 103896605 103896713 -138767640 + MER91C DNA MER1_type 3 123 -17 257 269 11 86 chr1 103897303 103897396 -138766957 - L2 LINE L2 -3 3269 3184 * 1589 260 169 19 chr1 103897379 103898222 -138766131 - L2 LINE L2 -243 3070 2107 788 284 173 34 chr1 103898376 103899242 -138765111 - L2 LINE L2 -1 3312 2317 190 103 0 0 chr1 103899284 103899313 -138765040 + L2 LINE L2 3283 3311 -2 1008 236 18 0 chr1 103900219 103900448 -138763905 + MIR SINE MIR 4 236 -26 22 35 0 0 chr1 103900472 103900501 -138763852 + AT_rich Low_complexity Low_complexity 1 29 0 194 302 60 35 chr1 103900503 103900619 -138763734 + MER5A DNA MER1_type 49 167 -22 737 202 24 65 chr1 103900907 103901123 -138763230 - L1ME2 LINE L1 -2 6165 5966 270 0 0 0 chr1 103901236 103901266 -138763087 + (A)n Simple_repeat Simple_repeat 1 30 0 246 202 96 43 chr1 103901266 103901360 -138762993 + MLT1H LTR MaLR 264 362 -180 499 185 43 0 chr1 103901400 103901492 -138762861 + MLT1H LTR MaLR 454 549 0 350 164 16 0 chr1 103902530 103902591 -138761762 + MER5A DNA MER1_type 41 102 -87 300 250 49 56 chr1 103902659 103902803 -138761550 + MIR SINE MIR 74 216 -46 29 47 0 0 chr1 103903236 103903279 -138761074 + AT_rich Low_complexity Low_complexity 1 43 0 261 0 0 0 chr1 103903639 103903668 -138760685 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 450 36 0 0 chr1 103903924 103903980 -138760373 + (TG)n Simple_repeat Simple_repeat 2 57 0 416 274 135 43 chr1 103904077 103904285 -138760068 + MIR SINE MIR 30 256 -6 2873 183 16 27 chr1 103904388 103904939 -138759414 + MER68 LTR ERV1 1 545 -17 2232 88 11 0 chr1 103905185 103905501 -138758852 + AluSp SINE Alu 1 319 0 1501 112 40 13 chr1 103905522 103905746 -138758607 + MER30 DNA MER1_type 1 230 0 183 296 0 0 chr1 103906003 103906047 -138758306 - L2 LINE L2 -4 3268 3225 2419 81 0 0 chr1 103906296 103906594 -138757759 + AluY SINE Alu 1 298 -13 226 62 0 0 chr1 103906616 103906648 -138757705 - Alu SINE Alu -8 293 262 984 240 18 0 chr1 103906914 103907143 -138757210 + MIR SINE MIR 4 236 -26 22 35 0 0 chr1 103907167 103907196 -138757157 + AT_rich Low_complexity Low_complexity 1 29 0 194 302 60 35 chr1 103907198 103907314 -138757039 + MER5A DNA MER1_type 49 167 -22 4848 168 19 15 chr1 103907603 103908827 -138755526 - L1MB7 LINE L1 -19 6165 4938 2534 214 95 23 chr1 103908852 103909548 -138754805 - L1ME3A LINE L1 -9 6161 5416 1666 162 41 32 chr1 103909571 103909731 -138754622 - MLT1A1 LTR MaLR -47 318 161 1921 142 0 53 chr1 103909731 103909906 -138754447 - AluSx SINE Alu -6 306 154 297 0 0 0 chr1 103909906 103909939 -138754414 + (TG)n Simple_repeat Simple_repeat 2 34 0 1921 142 0 53 chr1 103909939 103910086 -138754267 - AluSx SINE Alu -158 154 1 1666 162 41 32 chr1 103910086 103910240 -138754113 - MLT1A1 LTR MaLR -204 161 1 395 186 0 69 chr1 103910242 103910344 -138754009 - L1ME3A LINE L1 -752 5418 5324 23 54 0 0 chr1 103910381 103910418 -138753935 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr1 103911870 103911894 -138752459 + AT_rich Low_complexity Low_complexity 1 24 0 410 313 27 0 chr1 103912062 103912174 -138752179 + MIR SINE MIR 60 174 -88 572 99 0 0 chr1 103912756 103912847 -138751506 + L1M4 LINE L1 4378 4468 -1678 399 317 43 48 chr1 103912877 103913023 -138751330 - MIR3 SINE MIR -46 162 17 223 275 58 14 chr1 103913754 103913823 -138750530 - L2 LINE L2 0 3313 3242 1994 116 0 32 chr1 103913836 103914121 -138750232 + AluSq SINE Alu 1 276 -37 225 0 0 0 chr1 103914124 103914149 -138750204 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 397 269 48 0 chr1 103914276 103914380 -138749973 + L2 LINE L2 3162 3270 -2 186 300 17 17 chr1 103914428 103914488 -138749865 - MIR SINE MIR -67 141 82 249 266 18 124 chr1 103914545 103914577 -138749776 + MIR3 SINE MIR 97 131 -77 2343 108 3 0 chr1 103914577 103914884 -138749469 - AluSg1 SINE Alu -1 308 1 249 266 18 124 chr1 103914884 103914964 -138749389 + MIR3 SINE MIR 131 197 -11 5347 163 23 4 chr1 103915401 103917228 -138747125 + L1MB7 LINE L1 4312 6174 -10 255 310 0 0 chr1 103917488 103917546 -138746807 - L2 LINE L2 -14 3299 3242 687 287 92 38 chr1 103917646 103917907 -138746446 - LTR16C LTR ERVL -2 489 215 322 327 26 45 chr1 103918557 103918713 -138745640 - L2 LINE L2 -227 3045 2893 2369 84 0 7 chr1 103919377 103919685 -138744668 - AluY SINE Alu -5 306 1 2570 133 64 7 chr1 103920062 103920467 -138743886 + MSTA LTR MaLR 1 428 0 6105 187 27 29 chr1 103920471 103920856 -138743497 + ERVL LTR ERVL 1679 2063 -3701 180 0 0 0 chr1 103920856 103920876 -138743477 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1628 161 0 15 chr1 103920883 103921157 -138743196 - AluJb SINE Alu -37 275 6 6105 187 27 29 chr1 103921157 103921934 -138742419 + ERVL LTR ERVL 2069 2847 -2917 4928 231 41 13 chr1 103921938 103923260 -138741093 + L1ME4a LINE L1 3910 5268 -878 2717 196 53 19 chr1 103923261 103924036 -138740317 + L1MB8 LINE L1 4617 5308 -838 5544 146 32 8 chr1 103924037 103925274 -138739079 + L1MA4 LINE L1 4943 6203 -97 2908 233 81 15 chr1 103925315 103925330 -138739023 + L1MB8 LINE L1 5295 5308 -870 2189 127 0 13 chr1 103925330 103925637 -138738716 + AluSx SINE Alu 1 303 -9 2908 233 81 15 chr1 103925637 103926420 -138737933 + L1MB8 LINE L1 5308 6146 -32 343 60 20 0 chr1 103926429 103926479 -138737874 + MADE1 DNA Mariner 30 80 0 575 253 81 11 chr1 103928830 103929004 -138735349 + MIR SINE MIR 45 230 -32 2309 105 0 7 chr1 103929406 103929712 -138734641 - AluSx SINE Alu -8 304 1 262 206 190 7 chr1 103931643 103931723 -138732630 - MIR SINE MIR -33 175 86 1061 219 164 12 chr1 103932104 103932360 -138731993 + AluSc SINE Alu 3 297 -2 196 258 109 78 chr1 103932568 103932696 -138731657 - L2 LINE L2 -897 2417 2286 405 297 113 42 chr1 103933188 103933298 -138731055 + L1ME4a LINE L1 5385 5486 -635 339 208 195 71 chr1 103933298 103933464 -138730889 - MER112 DNA MER1_type -1 255 52 261 0 0 0 chr1 103933464 103933493 -138730860 + (TG)n Simple_repeat Simple_repeat 2 30 0 339 208 195 71 chr1 103933493 103933552 -138730801 - MER112 DNA MER1_type -204 52 2 405 297 113 42 chr1 103933552 103933944 -138730409 + L1ME4a LINE L1 5486 5925 -196 542 309 74 13 chr1 103933988 103934218 -138730135 + MIR SINE MIR 13 256 -6 355 200 56 11 chr1 103934257 103934347 -138730006 + L1ME4a LINE L1 5991 6084 -37 295 254 90 8 chr1 103934884 103935006 -138729347 - L1ME4a LINE L1 -31 6090 5959 322 265 92 78 chr1 103935047 103935341 -138729012 - L1ME4a LINE L1 -236 5885 5588 562 249 131 46 chr1 103935593 103935728 -138728625 - MIR SINE MIR -3 259 137 2316 117 0 0 chr1 103935728 103936037 -138728316 + AluSx SINE Alu 1 309 -3 562 249 131 46 chr1 103936037 103936138 -138728215 - MIR SINE MIR -125 137 3 22 35 0 0 chr1 103936801 103936830 -138727523 + AT_rich Low_complexity Low_complexity 1 29 0 274 271 14 0 chr1 103937611 103937681 -138726672 + MER96 DNA MER1_type? 1 71 -104 377 230 0 0 chr1 103939205 103939279 -138725074 - MLT1B LTR MaLR -236 154 81 532 46 15 0 chr1 103939438 103939503 -138724850 - MLT1B LTR MaLR -324 66 1 273 260 80 10 chr1 103939862 103939962 -138724391 - MER5A DNA MER1_type -44 145 39 2002 114 26 0 chr1 103940221 103940493 -138723860 + AluSx SINE Alu 9 287 -25 553 277 19 25 chr1 103940553 103940712 -138723641 - MIR SINE MIR -84 178 21 1911 142 3 20 chr1 103940995 103941291 -138723062 + AluJo SINE Alu 1 291 -21 274 235 0 25 chr1 103941512 103941593 -138722760 + A-rich Low_complexity Low_complexity 5 83 0 343 236 79 42 chr1 103941672 103941837 -138722516 - L1M4 LINE L1 -2881 3265 3095 311 270 117 9 chr1 103941861 103941972 -138722381 - MIR3 SINE MIR -9 199 77 216 250 0 21 chr1 103942025 103942073 -138722280 + polypyrimidine Low_complexity Low_complexity 5 51 0 425 172 11 11 chr1 103942351 103942438 -138721915 + LTR43 LTR ERV1 191 277 -325 496 175 0 12 chr1 103942566 103942646 -138721707 + LTR35 LTR ERV1 540 618 0 2126 100 7 7 chr1 103942887 103943178 -138721175 + AluSc SINE Alu 1 291 -18 1930 117 67 0 chr1 103943251 103943534 -138720819 + AluSg SINE Alu 1 302 -8 185 0 40 0 chr1 103944073 103944098 -138720255 + (CA)n Simple_repeat Simple_repeat 2 27 0 31 26 0 0 chr1 103944739 103944777 -138719576 + AT_rich Low_complexity Low_complexity 1 38 0 701 174 9 0 chr1 103944786 103944901 -138719452 - FLAM_C SINE Alu -26 117 2 1494 148 18 0 chr1 103944902 103945125 -138719228 - L1PA16 LINE L1 -7 6159 5933 2392 97 0 0 chr1 103945289 103945588 -138718765 + AluSx SINE Alu 1 299 -13 2282 120 0 0 chr1 103945996 103946295 -138718058 + AluSx SINE Alu 1 299 -13 267 325 194 16 chr1 103946544 103946920 -138717433 + L2 LINE L2 2825 3267 -5 1944 165 90 63 chr1 103948207 103948686 -138715667 + LTR22B LTR ERVK 1 492 0 1375 218 64 74 chr1 103948707 103949299 -138715054 - L1MC5 LINE L1 -40 7921 7336 814 218 42 57 chr1 103949393 103949655 -138714698 - L1MC5 LINE L1 -781 7180 6923 310 253 96 27 chr1 103949658 103949804 -138714549 - MER110 LTR ERV1 -135 356 201 21 36 0 0 chr1 103949917 103949945 -138714408 + AT_rich Low_complexity Low_complexity 1 28 0 372 331 46 30 chr1 103949992 103950358 -138713995 - L1MEc LINE L1 -2451 3764 3393 614 256 144 13 chr1 103950376 103950751 -138713602 - L1MEc LINE L1 -2869 3346 2923 2465 123 80 5 chr1 103950814 103951212 -138713141 + MSTA LTR MaLR 1 428 0 658 178 42 0 chr1 103951217 103951335 -138713018 - MLT1E LTR MaLR 0 593 471 725 224 31 19 chr1 103951345 103951398 -138712955 - MLT1E LTR MaLR -430 163 112 1317 182 104 118 chr1 103951398 103951925 -138712428 - MLT2B1 LTR ERVL 0 520 1 725 224 31 19 chr1 103951925 103952032 -138712321 - MLT1E LTR MaLR -481 112 1 411 285 7 7 chr1 103952291 103952428 -138711925 - L1MEc LINE L1 -3560 2655 2519 321 300 45 53 chr1 103952444 103952683 -138711670 - L1MEc LINE L1 -3774 2441 2242 682 197 171 80 chr1 103952683 103952922 -138711431 + MIR SINE MIR 2 262 0 321 300 45 53 chr1 103952922 103953019 -138711334 - L1MEc LINE L1 -3973 2242 2146 1602 219 105 8 chr1 103953555 103953956 -138710397 - L1ME1 LINE L1 -5 6161 5722 361 235 68 30 chr1 103955166 103955298 -138709055 + MIR SINE MIR 21 157 -105 360 111 0 0 chr1 103955704 103955758 -138708595 + (CCCCAG)n Simple_repeat Simple_repeat 2 55 0 30 0 0 0 chr1 103956192 103956222 -138708131 + AT_rich Low_complexity Low_complexity 1 30 0 592 137 11 0 chr1 103958296 103958391 -138705962 + AluJo SINE Alu 39 134 -178 218 217 0 0 chr1 103959439 103959485 -138704868 + A-rich Low_complexity Low_complexity 1 46 0 575 268 62 16 chr1 103960151 103960345 -138704008 + MIR SINE MIR 5 207 -55 2193 112 7 0 chr1 103960705 103961009 -138703344 - AluY SINE Alu -5 306 1 2501 127 59 35 chr1 103961338 103961756 -138702597 + L1MB3 LINE L1 5708 6139 -44 2026 110 46 3 chr1 103961756 103962038 -138702315 + AluSg SINE Alu 6 299 -11 2501 127 59 35 chr1 103962038 103962077 -138702276 + L1MB3 LINE L1 6139 6176 -7 240 244 104 37 chr1 103963987 103964122 -138700231 - L2 LINE L2 -1 3312 3169 1798 97 9 130 chr1 103964340 103964679 -138699674 + AluSx SINE Alu 1 298 -4 253 288 110 0 chr1 103964851 103964924 -138699429 + L2 LINE L2 3187 3267 -5 351 233 151 87 chr1 103965213 103965432 -138698921 + MER112 DNA MER1_type 28 260 0 2248 96 0 7 chr1 103965600 103965892 -138698461 - AluSc SINE Alu -19 290 1 537 234 190 5 chr1 103966242 103966426 -138697927 - MIR SINE MIR -1 261 44 2091 102 28 7 chr1 103967273 103967558 -138696795 + AluSq SINE Alu 1 291 -22 394 267 42 0 chr1 103967581 103967701 -138696652 + L1ME2 LINE L1 6039 6163 -1 1739 170 25 0 chr1 103968073 103968350 -138696003 + AluJo SINE Alu 1 284 -28 26 0 0 0 chr1 103968351 103968377 -138695976 + AT_rich Low_complexity Low_complexity 1 26 0 657 195 226 49 chr1 103969209 103969435 -138694918 + L1MC4a LINE L1 6159 6416 -1392 1174 201 162 16 chr1 103969517 103969820 -138694533 + L1MD3 LINE L1 6690 7036 -959 195 100 0 0 chr1 103969820 103969850 -138694503 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2305 91 7 0 chr1 103969869 103970165 -138694188 - AluY SINE Alu -13 298 1 218 255 153 20 chr1 103972652 103972750 -138691603 + MIR3 SINE MIR 64 174 -34 391 224 128 45 chr1 103973272 103973451 -138690902 + MIR SINE MIR 62 255 -7 223 313 131 10 chr1 103975413 103975512 -138688841 - MIR3 SINE MIR -32 176 66 2331 92 20 0 chr1 103975722 103976026 -138688327 + AluSp SINE Alu 1 310 -3 309 212 254 42 chr1 103977001 103977119 -138687234 + MIR SINE MIR 9 151 -111 2120 112 10 10 chr1 103977147 103977450 -138686903 + AluSq SINE Alu 11 313 0 201 283 167 40 chr1 103978260 103978458 -138685895 - L3b LINE CR1 -120 1463 1241 22 0 0 0 chr1 103980032 103980054 -138684299 + AT_rich Low_complexity Low_complexity 1 22 0 1368 216 27 27 chr1 103980295 103980633 -138683720 + MER58B DNA MER1_type 4 341 0 408 281 130 11 chr1 103986052 103986237 -138678116 - L3b LINE CR1 -186 1397 1191 2165 238 120 62 chr1 103986591 103988809 -138675544 - HAL1 LINE L1 -1 2506 62 2153 86 4 7 chr1 103989126 103989442 -138674911 + AluSc SINE Alu 1 315 0 250 26 0 103 chr1 103989992 103990004 -138674349 - MER41A LTR ERV1 -122 432 420 2450 80 0 3 chr1 103990004 103990306 -138674047 + AluSc SINE Alu 1 301 -8 250 26 0 103 chr1 103990306 103990332 -138674021 - MER41A LTR ERV1 -134 420 398 208 326 0 94 chr1 103991041 103991085 -138673268 - MIR SINE MIR -118 144 97 2142 134 0 3 chr1 103991085 103991390 -138672963 + AluSx SINE Alu 1 304 -8 208 326 0 94 chr1 103991390 103991483 -138672870 - MIR SINE MIR -165 97 20 369 285 30 80 chr1 103991700 103991900 -138672453 + MIR SINE MIR 44 233 -29 252 0 0 0 chr1 103993212 103993240 -138671113 + (CTGGGG)n Simple_repeat Simple_repeat 4 31 0 464 187 12 111 chr1 103993240 103993411 -138670942 - MER20 DNA MER1_type -65 154 1 224 209 0 30 chr1 103993963 103994030 -138670323 + L2 LINE L2 2162 2226 -1088 188 296 23 0 chr1 103994164 103994208 -138670145 - L2 LINE L2 -15 3257 3213 2731 268 195 18 chr1 103994306 103996025 -138668328 + L2 LINE L2 1282 3313 0 383 250 83 69 chr1 103996647 103996851 -138667502 + L2 LINE L2 3106 3312 -1 1466 166 101 11 chr1 103998076 103998353 -138666000 + AluJb SINE Alu 11 312 0 2452 64 0 3 chr1 103999867 104000164 -138664189 - AluY SINE Alu -15 296 1 227 361 80 17 chr1 104000214 104000452 -138663901 + MIR SINE MIR 4 256 -6 1068 308 90 7 chr1 104000535 104001000 -138663353 + MLT1J LTR MaLR 5 508 -3 203 182 18 36 chr1 104001455 104001510 -138662843 + MER5C DNA MER1_type 1 54 -270 355 275 22 10 chr1 104001705 104001840 -138662513 + MER5B DNA MER1_type 51 178 0 2419 88 0 0 chr1 104001947 104002244 -138662109 - AluSg SINE Alu -13 297 1 231 328 46 38 chr1 104002975 104003106 -138661247 - L2 LINE L2 -4 3268 3137 530 323 82 19 chr1 104003260 104003896 -138660457 + L2 LINE L2 1665 2433 -881 210 133 22 44 chr1 104004221 104004266 -138660087 + (CACCC)n Simple_repeat Simple_repeat 5 48 0 1942 163 41 15 chr1 104006816 104007154 -138657199 + MER7A DNA MER2_type 2 346 0 2240 138 0 0 chr1 104007521 104007868 -138656485 + AluJb SINE Alu 1 347 0 277 277 69 10 chr1 104007885 104007986 -138656367 + MIR3 SINE MIR 77 183 -25 2303 103 3 3 chr1 104008422 104008733 -138655620 + AluSx SINE Alu 1 311 -1 489 248 160 29 chr1 104009009 104009215 -138655138 + MIR SINE MIR 28 260 -2 2631 173 36 12 chr1 104010659 104011163 -138653190 - L1MA9 LINE L1 -30 6282 5767 1933 153 17 0 chr1 104011173 104011474 -138652879 - AluJb SINE Alu -4 308 3 1487 172 54 84 chr1 104012522 104012808 -138651545 - L1MD3 LINE L1 0 7995 7702 966 137 0 0 chr1 104012808 104012939 -138651414 - FLAM_C SINE Alu -12 131 1 1487 172 54 84 chr1 104012939 104013227 -138651126 - L1MD3 LINE L1 -293 7702 7187 441 132 92 0 chr1 104013230 104013306 -138651047 - MLT1F1 LTR MaLR -448 119 37 2278 98 7 3 chr1 104013323 104013619 -138650734 + AluSx SINE Alu 3 299 -13 195 100 0 0 chr1 104013638 104013668 -138650685 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1174 201 162 16 chr1 104013668 104013971 -138650382 - L1MD3 LINE L1 -959 7036 6690 657 195 226 49 chr1 104014053 104014279 -138650074 - L1MC4a LINE L1 -1392 6416 6159 26 0 0 0 chr1 104015111 104015137 -138649216 + AT_rich Low_complexity Low_complexity 1 26 0 1739 170 25 0 chr1 104015138 104015415 -138648938 - AluJo SINE Alu -28 284 1 394 267 42 0 chr1 104015787 104015907 -138648446 - L1ME2 LINE L1 -1 6163 6039 2091 102 28 7 chr1 104015930 104016215 -138648138 - AluSq SINE Alu -22 291 1 537 234 190 5 chr1 104017062 104017246 -138647107 + MIR SINE MIR 44 261 -1 2248 96 0 7 chr1 104017596 104017888 -138646465 + AluSc SINE Alu 1 290 -19 351 233 151 87 chr1 104018056 104018275 -138646078 - MER112 DNA MER1_type 0 260 28 253 288 110 0 chr1 104018564 104018637 -138645716 - L2 LINE L2 -5 3267 3187 1292 103 0 0 chr1 104018809 104018974 -138645379 - AluSc SINE Alu -14 295 131 1876 104 11 32 chr1 104019077 104019355 -138644998 + AluSx SINE Alu 40 311 -1 25 0 0 0 chr1 104021493 104021518 -138642835 + AT_rich Low_complexity Low_complexity 1 25 0 192 163 0 0 chr1 104021690 104021733 -138642620 + T-rich Low_complexity Low_complexity 1 43 0 604 224 15 22 chr1 104021900 104022034 -138642319 - MER45 DNA AcHobo -905 135 3 391 229 266 9 chr1 104022040 104022149 -138642204 + MIR SINE MIR 35 171 -91 2305 104 3 13 chr1 104022149 104022458 -138641895 - AluSq SINE Alu -7 306 1 207 0 0 0 chr1 104022733 104022756 -138641597 + (A)n Simple_repeat Simple_repeat 1 23 0 340 260 31 10 chr1 104023490 104023586 -138640767 + MIR SINE MIR 15 112 -150 2362 72 0 42 chr1 104023779 104024085 -138640268 - AluSg SINE Alu -17 293 1 2306 98 9 25 chr1 104025098 104025414 -138638939 - AluSx SINE Alu -1 311 1 441 243 27 27 chr1 104025442 104025553 -138638800 - MIR SINE MIR -145 117 7 21 57 0 0 chr1 104025557 104025592 -138638761 + AT_rich Low_complexity Low_complexity 1 35 0 299 277 50 42 chr1 104025599 104025718 -138638635 - L2 LINE L2 -189 3124 3005 2274 97 3 3 chr1 104026058 104026358 -138637995 + AluSg1 SINE Alu 1 300 -9 569 179 36 50 chr1 104026408 104026468 -138637885 - Charlie1 DNA MER1_type 0 2761 2702 2115 137 0 7 chr1 104026468 104026767 -138637586 + AluJb SINE Alu 1 297 -15 569 179 36 50 chr1 104026767 104026846 -138637507 - Charlie1 DNA MER1_type -59 2702 2624 * 1029 190 77 5 chr1 104026835 104027056 -138637297 - Charlie1 DNA MER1_type -2524 237 1 757 183 0 29 chr1 104027085 104027222 -138637131 - FLAM_C SINE Alu 0 133 1 1087 170 97 28 chr1 104027251 104027498 -138636855 - MLT1E3 LTR MaLR 0 624 361 1065 149 105 60 chr1 104027499 104027712 -138636641 - MLT1E3 LTR MaLR -395 259 32 2168 112 3 0 chr1 104027712 104028006 -138636347 - AluSx SINE Alu -14 298 4 1065 149 105 60 chr1 104028006 104028040 -138636313 - MLT1E3 LTR MaLR -622 32 1 367 203 203 23 chr1 104028186 104028314 -138636039 + MIR SINE MIR 94 244 -18 2514 52 0 52 chr1 104028374 104028699 -138635654 - AluY SINE Alu -3 308 1 3947 153 34 4 chr1 104028728 104029403 -138634950 + L1MB7 LINE L1 5454 6148 -36 1315 253 17 3 chr1 104029404 104029697 -138634656 + MLT1G LTR MaLR 292 588 -2 2363 86 0 10 chr1 104030236 104030538 -138633815 - AluSg SINE Alu -11 299 1 335 252 88 44 chr1 104031067 104031226 -138633127 + L1MC5 LINE L1 7708 7873 -88 2299 81 0 39 chr1 104031449 104031758 -138632595 + AluSc SINE Alu 1 297 -12 415 239 22 0 chr1 104032125 104032217 -138632136 + MER115 DNA AcHobo 154 247 -446 240 154 0 0 chr1 104032384 104032423 -138631930 + Zaphod DNA AcHobo 3992 4030 -1 334 284 59 0 chr1 104032424 104032526 -138631827 - MIR SINE MIR -95 167 60 294 257 0 0 chr1 104033248 104033318 -138631035 - MIR SINE MIR -40 222 153 373 40 20 0 chr1 104033318 104033368 -138630985 + MADE1 DNA Mariner 1 51 -29 420 208 0 0 chr1 104033754 104033850 -138630503 + (TA)n Simple_repeat Simple_repeat 2 97 0 230 160 32 11 chr1 104033888 104033982 -138630371 + (TA)n Simple_repeat Simple_repeat 2 97 0 875 143 0 0 chr1 104034052 104034171 -138630182 + FLAM_C SINE Alu 9 127 -16 26 50 0 0 chr1 104034171 104034211 -138630142 + AT_rich Low_complexity Low_complexity 1 40 0 189 242 30 30 chr1 104034212 104034278 -138630075 - L2 LINE L2 -14 3299 3234 444 292 113 29 chr1 104034536 104034776 -138629577 - MIR SINE MIR -1 261 2 1940 147 3 16 chr1 104035025 104035338 -138629015 + AluJo SINE Alu 1 309 -3 693 276 91 55 chr1 104035356 104035740 -138628613 - MLT1K LTR MaLR -21 567 170 21 0 0 0 chr1 104037247 104037268 -138627085 + AT_rich Low_complexity Low_complexity 1 21 0 2353 91 0 28 chr1 104037573 104037893 -138626460 + AluY SINE Alu 1 311 0 2138 103 11 0 chr1 104038397 104038707 -138625646 + AluSx SINE Alu 1 313 0 1911 162 13 3 chr1 104038960 104039268 -138625085 + AluJo SINE Alu 1 311 -1 2320 104 0 3 chr1 104039578 104039877 -138624476 - AluSg SINE Alu -12 298 1 459 178 0 11 chr1 104040390 104040480 -138623873 - AluJb SINE Alu -22 290 202 2440 85 3 0 chr1 104040512 104040818 -138623535 + AluSx SINE Alu 1 307 -5 772 259 103 0 chr1 104040935 104041159 -138623194 + MIR SINE MIR 2 248 -14 489 113 14 0 chr1 104042541 104042612 -138621741 - AluSp SINE Alu -122 191 120 207 194 0 174 chr1 104042613 104042711 -138621642 + MIR SINE MIR 70 150 -112 1650 132 7 82 chr1 104043226 104043564 -138620789 + AluSx SINE Alu 1 315 0 1567 160 66 10 chr1 104044278 104044566 -138619787 + AluJo SINE Alu 1 304 -8 2192 106 3 0 chr1 104044773 104045079 -138619274 + AluSx SINE Alu 1 307 0 1217 223 21 7 chr1 104045861 104046143 -138618210 + MLT2D LTR ERVL 21 306 -108 870 181 54 0 chr1 104046143 104046309 -138618044 - FRAM SINE Alu -6 170 1 570 144 8 121 chr1 104046310 104046442 -138617911 + MLT2D LTR ERVL 298 414 0 * 692 278 102 29 chr1 104046442 104046748 -138617605 - MLT1J2 LTR MaLR -21 429 101 1549 182 31 3 chr1 104047096 104047387 -138616966 + AluJo SINE Alu 1 299 -13 2263 114 0 0 chr1 104047467 104047764 -138616589 + AluSx SINE Alu 1 297 -15 225 281 71 46 chr1 104047986 104048182 -138616171 + L2 LINE L2 2517 2717 -597 1244 223 73 83 chr1 104048247 104048740 -138615613 + MLT1H LTR MaLR 22 512 -37 2061 134 0 3 chr1 104048740 104049058 -138615295 - AluSx SINE Alu 0 317 1 1244 223 73 83 chr1 104049058 104049096 -138615257 + MLT1H LTR MaLR 512 549 0 305 299 156 22 chr1 104049205 104049436 -138614917 - L2 LINE L2 -979 2335 2074 231 146 0 0 chr1 104050141 104050182 -138614171 + (GA)n Simple_repeat Simple_repeat 2 42 0 423 0 0 0 chr1 104050184 104050231 -138614122 + (TG)n Simple_repeat Simple_repeat 1 47 0 414 203 0 25 chr1 104050459 104050538 -138613815 + MER63 DNA MER1_type 673 749 -313 880 122 23 0 chr1 104050616 104050747 -138613606 + AluSg SINE Alu 1 134 -176 491 111 0 12 chr1 104050847 104050928 -138613425 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 21 57 0 0 chr1 104051040 104051075 -138613278 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 104052562 104052590 -138611763 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chr1 104052829 104052870 -138611483 + (TG)n Simple_repeat Simple_repeat 2 42 0 1564 264 87 4 chr1 104052870 104053321 -138611032 - LTR16C LTR ERVL -3 488 1 267 312 26 39 chr1 104053517 104053671 -138610682 + L2 LINE L2 2867 3018 -254 323 322 81 38 chr1 104053816 104054027 -138610326 + L2 LINE L2 3039 3258 -14 279 79 0 0 chr1 104054260 104054298 -138610055 + (TC)n Simple_repeat Simple_repeat 2 39 0 489 291 8 0 chr1 104054311 104054438 -138609915 - L2 LINE L2 -6 3307 3180 810 271 196 14 chr1 104054774 104055055 -138609298 - L1MD2 LINE L1 -29 6330 5999 3559 206 50 65 chr1 104055060 104056208 -138608145 - L1M4 LINE L1 -850 5296 4166 316 342 45 40 chr1 104058540 104058742 -138605611 - L2 LINE L2 -231 3041 2839 1700 203 26 80 chr1 104058749 104059264 -138605089 - MLT2B1 LTR ERVL 0 445 3 1669 169 7 14 chr1 104059502 104059797 -138604556 - AluJo SINE Alu -15 297 5 321 176 44 44 chr1 104059902 104059970 -138604383 + L2 LINE L2 3240 3307 -6 3689 150 28 7 chr1 104060834 104061402 -138602951 + LTR22 LTR ERVK 1 580 0 383 155 14 0 chr1 104061445 104061516 -138602837 + L1M2 LINE L1 5386 5457 -843 204 105 0 53 chr1 104061535 104061592 -138602761 + (TA)n Simple_repeat Simple_repeat 2 55 0 2562 165 20 26 chr1 104061597 104061699 -138602654 - L1MA6 LINE L1 -61 6239 6138 1810 157 31 0 chr1 104061699 104061986 -138602367 + AluSx SINE Alu 1 296 -16 2562 165 20 26 chr1 104061986 104062373 -138601980 - L1MA6 LINE L1 -162 6138 5753 * 7731 147 12 20 chr1 104062349 104062375 -138601978 - L1MA6 LINE L1 -743 5403 5378 2086 106 0 0 chr1 104062375 104062650 -138601703 - AluSg SINE Alu -35 275 1 7731 147 12 20 chr1 104062650 104064126 -138600227 - L1MA6 LINE L1 -768 5378 4028 790 248 90 43 chr1 104064478 104064800 -138599553 + L2 LINE L2 2513 2849 -465 1351 263 53 22 chr1 104064995 104065444 -138598909 + L2 LINE L2 2851 3313 0 567 264 123 22 chr1 104066248 104066525 -138597828 - L1ME4a LINE L1 -218 5903 5599 530 284 149 5 chr1 104066528 104066722 -138597631 - MIR SINE MIR 0 262 41 2578 194 19 8 chr1 104066925 104067436 -138596917 + LTR27 LTR ERV1 3 490 -11 773 293 104 58 chr1 104067890 104067981 -138596372 + MLT1L LTR MaLR 154 239 -376 2303 121 0 0 chr1 104067981 104068288 -138596065 + AluSx SINE Alu 3 309 -3 773 293 104 58 chr1 104068288 104068630 -138595723 + MLT1L LTR MaLR 239 607 -8 2150 108 0 0 chr1 104069365 104069726 -138594627 - AluSg SINE Alu 0 363 3 1432 247 118 19 chr1 104070113 104070586 -138593767 + LTR33 LTR ERVL 1 520 -1 2393 80 0 13 chr1 104070770 104071082 -138593271 - AluY SINE Alu -3 308 1 2230 134 191 38 chr1 104071647 104072071 -138592282 + LTR45B LTR ERV1 1 489 0 250 343 83 39 chr1 104072143 104072324 -138592029 - L2 LINE L2 -179 3093 2905 2768 82 14 8 chr1 104072354 104072707 -138591646 + THE1A LTR MaLR 1 355 0 207 69 0 0 chr1 104073452 104073481 -138590872 + (TC)n Simple_repeat Simple_repeat 2 30 0 301 293 32 16 chr1 104074515 104074638 -138589715 - MIR SINE MIR -58 204 80 486 0 0 0 chr1 104075998 104076052 -138588301 + (TG)n Simple_repeat Simple_repeat 2 55 0 3946 161 59 9 chr1 104076052 104076786 -138587567 - L1MB8 LINE L1 -3 6175 5406 331 313 72 30 chr1 104077081 104077385 -138586968 + L1MC5 LINE L1 7501 7817 -144 2137 124 0 7 chr1 104077643 104077941 -138586412 + AluSx SINE Alu 1 296 -16 1438 224 71 37 chr1 104078471 104078824 -138585529 + MLT1A1 LTR MaLR 1 365 0 462 204 37 28 chr1 104079343 104079451 -138584902 - MIR3 SINE MIR -2 206 98 203 313 12 36 chr1 104079644 104079727 -138584626 - MIR3 SINE MIR -29 179 99 290 313 89 27 chr1 104079809 104079921 -138584432 + L2 LINE L2 3150 3268 -4 1953 92 4 8 chr1 104080789 104081050 -138583303 - AluSx SINE Alu -15 297 38 481 231 35 24 chr1 104081162 104081331 -138583022 + MLT1K LTR MaLR 146 316 -272 255 255 115 45 chr1 104081317 104081474 -138582879 + LTR16A LTR ERVL 276 443 -7 * 24 0 0 0 chr1 104081551 104081575 -138582778 + AT_rich Low_complexity Low_complexity 1 24 0 328 229 114 38 chr1 104082094 104082199 -138582154 + MER91A DNA MER1_type 53 165 -31 464 118 0 71 chr1 104082731 104082816 -138581537 - MADE1 DNA Mariner 0 80 2 483 259 13 3 chr1 104083940 104084259 -138580094 + (TCCA)n Simple_repeat Simple_repeat 1 322 0 646 263 91 0 chr1 104084446 104084621 -138579732 + MIR SINE MIR 66 256 -6 1363 117 53 117 chr1 104084701 104084983 -138579370 + MER75 DNA T2_type 1 264 -250 2027 154 3 0 chr1 104085213 104085525 -138578828 - AluSp SINE Alu 0 313 1 2243 96 7 0 chr1 104085541 104085833 -138578520 - AluSx SINE Alu -18 294 1 1405 57 0 31 chr1 104086242 104086435 -138577918 + MER75B DNA T2_type 51 237 -6 4873 146 18 31 chr1 104087468 104088262 -138576091 + LTR39 LTR ERV1 1 783 0 3479 98 22 4 chr1 104089646 104090103 -138574250 + MER4C LTR ERV1 1 465 0 2532 141 71 26 chr1 104090115 104090606 -138573747 + MER4C-int LTR ERV1 9 568 -6030 212 0 36 0 chr1 104090606 104090634 -138573719 + (TTG)n Simple_repeat Simple_repeat 2 30 0 250 254 0 0 chr1 104090637 104090692 -138573661 + MER4C-int LTR ERV1 632 686 -5912 4046 151 33 9 chr1 104090792 104091486 -138572867 - MER50 LTR ERV1 -23 711 1 1758 221 59 40 chr1 104091505 104091930 -138572423 + MER4C-int LTR ERV1 1839 2271 -4060 281 229 82 3 chr1 104091934 104092019 -138572334 + MER4C-int LTR ERV1 851 1388 -3829 305 148 0 19 chr1 104092044 104092098 -138572255 + MER34C LTR ERV1 160 212 -373 2632 155 20 33 chr1 104092163 104092740 -138571613 + MER4C-int LTR ERV1 1840 3024 -3734 4657 150 55 59 chr1 104092741 104094381 -138569972 + MER4C-int LTR ERV1 786 3779 -2819 * 14118 144 34 34 chr1 104094377 104095477 -138568876 + MER4C-int LTR ERV1 3942 5041 -1557 2487 72 7 0 chr1 104095477 104095783 -138568570 - AluSp SINE Alu -5 308 1 14118 144 34 34 chr1 104095783 104097339 -138567014 + MER4C-int LTR ERV1 5041 6596 -2 2957 106 53 29 chr1 104097347 104097801 -138566552 + MER4C LTR ERV1 1 465 0 289 319 25 25 chr1 104097805 104097924 -138566429 - MIR SINE MIR -74 134 16 256 296 156 30 chr1 104098288 104098423 -138565930 - MIR SINE MIR -35 227 76 980 142 67 205 chr1 104098845 104098901 -138565452 - LTR7 LTR ERV1 0 450 388 3032 51 0 0 chr1 104098901 104099252 -138565101 - L1PA4 LINE L1 -3 6152 5802 980 142 67 205 chr1 104099252 104099717 -138564636 - LTR7 LTR ERV1 -62 388 1 2204 117 0 19 chr1 104099985 104100302 -138564051 - AluSx SINE Alu -1 311 1 288 324 45 9 chr1 104100657 104100768 -138563585 - MIR SINE MIR -64 144 30 2879 86 58 21 chr1 104101220 104101652 -138562701 + LTR7 LTR ERV1 1 448 -2 201 94 0 0 chr1 104101951 104101983 -138562370 + (TG)n Simple_repeat Simple_repeat 2 33 0 2136 105 7 3 chr1 104102271 104102566 -138561787 + AluSx SINE Alu 1 296 -16 1833 150 14 7 chr1 104103001 104103287 -138561066 + AluJo SINE Alu 1 288 -24 189 292 125 14 chr1 104103475 104103619 -138560734 + L2 LINE L2 2738 2897 -417 223 239 163 22 chr1 104103790 104103882 -138560471 + L2 LINE L2 3209 3313 0 324 254 41 41 chr1 104104351 104104473 -138559880 + MIR SINE MIR 29 150 -112 1230 117 0 0 chr1 104105774 104105936 -138558417 - AluSg/x SINE Alu -17 293 132 2426 80 0 3 chr1 104105936 104106237 -138558116 - AluY SINE Alu -11 300 1 3173 115 14 16 chr1 104106308 104106813 -138557540 + L1MA5A LINE L1 5794 6297 0 237 246 18 0 chr1 104107409 104107466 -138556887 + L1ME4a LINE L1 5521 5578 -543 612 222 116 65 chr1 104109705 104109980 -138554373 + L1ME4a LINE L1 5800 6088 -33 349 282 108 20 chr1 104110074 104110269 -138554084 - MIR SINE MIR -20 242 31 455 245 31 0 chr1 104111389 104111487 -138552866 + MIR3 SINE MIR 87 187 -21 202 321 109 30 chr1 104111683 104111848 -138552505 + MIR SINE MIR 65 242 -20 1009 189 54 16 chr1 104111948 104111978 -138552375 + AluJb SINE Alu 91 118 -194 324 0 0 0 chr1 104111978 104112014 -138552339 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1009 189 54 16 chr1 104112014 104112168 -138552185 + AluJb SINE Alu 118 282 -30 219 186 0 0 chr1 104112173 104112216 -138552137 + GA-rich Low_complexity Low_complexity 3 45 0 309 175 16 16 chr1 104112233 104112296 -138552057 - AluSp SINE Alu -110 193 131 280 218 6 173 chr1 104112526 104112682 -138551671 + L2 LINE L2 3143 3272 0 2464 74 0 13 chr1 104113150 104113462 -138550891 - AluY SINE Alu -3 308 1 2248 104 0 3 chr1 104113462 104113758 -138550595 - AluSg SINE Alu -14 296 1 259 246 16 0 chr1 104114122 104114183 -138550170 + MER91 DNA MER1_type 3 64 -76 231 254 0 48 chr1 104114820 104114883 -138549470 - L2 LINE L2 -3 3269 3210 451 264 43 31 chr1 104114896 104115059 -138549294 - L2 LINE L2 -243 3070 2906 1798 117 0 8 chr1 104115169 104115417 -138548936 - AluSx SINE Alu -66 246 1 260 250 26 0 chr1 104115986 104116062 -138548291 - MLT1K LTR MaLR 0 588 511 1432 284 41 24 chr1 104116244 104116706 -138547647 + MLT1J LTR MaLR 5 474 -37 1695 155 70 26 chr1 104117408 104117749 -138546604 - MLT1A1 LTR MaLR 0 365 10 2062 244 33 50 chr1 104117758 104118304 -138546049 - MLT1A1-int LTR MaLR 0 1735 1199 356 191 0 0 chr1 104118380 104118443 -138545910 - MLT1A1-int LTR MaLR -994 741 679 3120 202 38 14 chr1 104118590 104119230 -138545123 - MLT1A1-int LTR MaLR -1080 655 1 1475 202 30 19 chr1 104119230 104119591 -138544762 - MLT1A1 LTR MaLR 0 365 1 372 218 78 28 chr1 104119796 104119938 -138544415 + MIR SINE MIR 86 234 -28 220 329 24 12 chr1 104120030 104120115 -138544238 - MIR SINE MIR -156 106 21 186 304 0 43 chr1 104120288 104120357 -138543996 - L2 LINE L2 -181 3091 3026 508 200 40 0 chr1 104120733 104120833 -138543520 + L2 LINE L2 3210 3313 0 2007 128 0 72 chr1 104121139 104121474 -138542879 + AluJb SINE Alu 1 311 -1 1088 179 0 0 chr1 104121475 104121648 -138542705 + AluJo/FRAM SINE Alu 131 303 -9 2033 157 0 3 chr1 104121655 104121960 -138542393 + AluSx SINE Alu 1 304 -8 895 218 142 46 chr1 104122114 104122417 -138541936 + MSTD LTR MaLR 1 332 -64 1869 149 0 23 chr1 104122421 104122723 -138541630 - AluSx SINE Alu -16 296 2 355 200 0 12 chr1 104122730 104122810 -138541543 - MLT1A1 LTR MaLR -8 449 371 223 247 11 79 chr1 104122867 104122956 -138541397 - MIR3 SINE MIR -45 163 81 2437 167 9 27 chr1 104123073 104123515 -138540838 - Tigger2a DNA MER2_type 0 434 1 1626 191 24 53 chr1 104123599 104123975 -138540378 - MLT1A1 LTR MaLR 0 365 1 435 19 0 0 chr1 104124189 104124241 -138540112 + (TA)n Simple_repeat Simple_repeat 2 53 0 301 314 162 16 chr1 104124622 104125093 -138539260 + L2 LINE L2 2773 3309 -4 1374 218 81 9 chr1 104125193 104125541 -138538812 - MER93b LTR ERV1 0 373 1 220 313 188 0 chr1 104125543 104125639 -138538714 - L2 LINE L2 -13 3259 3146 456 195 0 0 chr1 104125692 104125774 -138538579 - AluJo SINE Alu -12 300 219 588 141 11 0 chr1 104125779 104125871 -138538482 - AluJo SINE Alu -173 139 47 1665 154 86 4 chr1 104127067 104127347 -138537006 - AluJb SINE Alu -9 303 1 379 242 46 31 chr1 104127742 104127901 -138536452 + MIR SINE MIR 42 206 -56 245 311 138 88 chr1 104127922 104128363 -138535990 - L2 LINE L2 -2 3270 2808 2188 181 137 15 chr1 104128595 104129136 -138535217 - L1MB3 LINE L1 -2 6181 5575 393 271 16 31 chr1 104129321 104129450 -138534903 - MER69A DNA AcHobo -10 167 41 689 303 133 20 chr1 104129520 104129963 -138534390 + MLT1K LTR MaLR 61 553 -35 673 213 21 7 chr1 104130204 104130345 -138534008 + MER21B LTR ERV1 323 465 -398 1860 119 27 37 chr1 104130442 104130737 -138533616 - AluSx SINE Alu -20 292 1 352 309 59 7 chr1 104130835 104130987 -138533366 + MIR SINE MIR 22 181 -81 249 203 47 16 chr1 104131000 104131064 -138533289 + MER94 DNA DNA 1 66 -68 314 164 36 0 chr1 104131094 104131149 -138533204 - MER94 DNA DNA -63 71 15 193 263 0 0 chr1 104131169 104131207 -138533146 + L2 LINE L2 3252 3289 -24 4027 93 28 0 chr1 104131305 104131844 -138532509 - MER41A LTR ERV1 0 554 1 3817 192 30 24 chr1 104132196 104133077 -138531276 + L1ME1 LINE L1 5276 6161 -5 4324 140 27 13 chr1 104133133 104133826 -138530527 + MER50 LTR ERV1 12 714 -20 657 176 42 0 chr1 104134069 104134188 -138530165 - L1MB4 LINE L1 -54 6126 6003 23 0 0 0 chr1 104134684 104134707 -138529646 + AT_rich Low_complexity Low_complexity 1 23 0 918 139 0 0 chr1 104134708 104134837 -138529516 - FLAM_C SINE Alu -12 131 3 22 94 0 0 chr1 104135894 104135958 -138528395 + GC_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr1 104136428 104136454 -138527899 + GC_rich Low_complexity Low_complexity 1 26 0 236 205 68 120 chr1 104138388 104138505 -138525848 - MIR SINE MIR -68 194 84 2344 86 0 7 chr1 104138611 104138915 -138525438 - AluSx SINE Alu -10 302 1 330 268 22 22 chr1 104139249 104139387 -138524966 + MIR SINE MIR 28 165 -97 682 175 67 0 chr1 104141001 104141121 -138523232 - FLAM_C SINE Alu -5 128 1 2118 142 0 3 chr1 104141830 104142141 -138522212 - AluSx SINE Alu -2 310 1 343 113 42 28 chr1 104142364 104142435 -138521918 - MER69 DNA AcHobo -4 2522 2451 232 71 143 0 chr1 104142432 104142474 -138521879 - MER69 DNA AcHobo -2380 146 99 * 691 191 136 10 chr1 104142529 104142728 -138521625 + MIR SINE MIR 3 226 -36 2178 122 10 0 chr1 104144345 104144641 -138519712 - AluSx SINE Alu -13 299 1 2148 134 0 3 chr1 104144734 104145040 -138519313 - AluSx SINE Alu -7 305 1 2277 101 3 7 chr1 104145913 104146221 -138518132 + AluSp SINE Alu 1 307 -6 377 293 162 6 chr1 104146405 104146572 -138517781 - MIR SINE MIR -57 205 13 195 288 55 0 chr1 104146730 104146803 -138517550 - L2 LINE L2 -1347 1967 1891 1392 91 0 6 chr1 104146867 104147043 -138517310 - AluJb SINE Alu -52 260 86 1305 152 28 14 chr1 104148150 104148367 -138515986 + AluJo SINE Alu 83 302 -10 573 274 40 73 chr1 104149419 104149773 -138514580 - L3 LINE CR1 -220 1357 1016 1967 106 44 41 chr1 104151173 104151466 -138512887 - AluSq SINE Alu -19 294 1 1720 159 51 0 chr1 104151474 104151750 -138512603 - AluJb SINE Alu -22 290 1 195 241 0 0 chr1 104152237 104152291 -138512062 - L2 LINE L2 -307 2965 2912 226 167 42 21 chr1 104152905 104152953 -138511400 + L2 LINE L2 3179 3227 -86 658 189 21 95 chr1 104153817 104154062 -138510291 - MER106B DNA MER1_type 0 236 1 1565 189 10 13 chr1 104154082 104154388 -138509965 - AluJo SINE Alu -7 305 1 28 0 0 0 chr1 104154393 104154421 -138509932 + AT_rich Low_complexity Low_complexity 1 28 0 2221 101 0 0 chr1 104154435 104154721 -138509632 + AluSx SINE Alu 25 310 -2 2385 92 0 0 chr1 104155363 104155669 -138508684 - AluY SINE Alu -1 310 5 222 249 8 21 chr1 104156170 104156249 -138508104 - MIR SINE MIR -122 86 8 2278 103 0 0 chr1 104156969 104157260 -138507093 + AluSx SINE Alu 1 291 -21 624 143 0 0 chr1 104157392 104157490 -138506863 + AluJ/FLAM SINE Alu 2 99 -213 1654 181 11 0 chr1 104158505 104158781 -138505572 - AluJo SINE Alu -30 282 4 27 49 0 0 chr1 104158879 104158920 -138505433 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr1 104161835 104161863 -138502490 + AT_rich Low_complexity Low_complexity 1 28 0 2343 111 0 0 chr1 104161873 104162180 -138502173 - AluSx SINE Alu -5 307 1 786 199 0 0 chr1 104162182 104162313 -138502040 - AluJo/FLAM SINE Alu -180 132 2 397 249 90 23 chr1 104162842 104163019 -138501334 + L1ME4a LINE L1 5922 6110 -11 192 276 114 67 chr1 104164869 104164974 -138499379 - MIR SINE MIR -62 146 37 27 0 0 0 chr1 104166254 104166281 -138498072 + AT_rich Low_complexity Low_complexity 1 27 0 261 219 73 49 chr1 104167245 104167327 -138497026 + MER5B DNA MER1_type 94 177 -1 270 323 10 0 chr1 104167520 104167619 -138496734 - L2 LINE L2 -241 3031 2932 979 182 12 0 chr1 104167812 104167982 -138496371 + FAM SINE Alu 1 172 -3 781 174 161 11 chr1 104168489 104168756 -138495597 - LTR49 LTR ERV1 -1 594 434 963 166 99 71 chr1 104168776 104169029 -138495324 - LTR29 LTR ERV1 -360 262 3 2158 111 0 0 chr1 104169157 104169437 -138494916 - AluSx SINE Alu -30 282 3 2278 88 17 3 chr1 104169575 104169870 -138494483 + AluSp SINE Alu 1 299 -14 2294 107 0 0 chr1 104171321 104171611 -138492742 - AluSx SINE Alu -22 290 1 285 219 333 0 chr1 104171784 104171907 -138492446 + MIR SINE MIR 88 251 -11 994 144 19 0 chr1 104172390 104172550 -138491803 - AluSg/x SINE Alu -13 299 137 2393 84 3 10 chr1 104173102 104173410 -138490943 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr1 104173494 104173515 -138490838 + AT_rich Low_complexity Low_complexity 1 21 0 291 308 100 0 chr1 104173567 104173697 -138490656 - L1ME LINE L1 -371 5750 5608 324 0 0 0 chr1 104173698 104173734 -138490619 + (TG)n Simple_repeat Simple_repeat 1 36 0 2019 121 14 10 chr1 104174198 104174330 -138490023 + AluSg SINE Alu 1 131 -179 234 91 0 0 chr1 104174330 104174363 -138489990 + (TA)n Simple_repeat Simple_repeat 2 34 0 2019 121 14 10 chr1 104174363 104174527 -138489826 + AluSg SINE Alu 131 298 -12 22 0 0 0 chr1 104174954 104174976 -138489377 + AT_rich Low_complexity Low_complexity 1 22 0 845 201 29 29 chr1 104175031 104175240 -138489113 + MIR SINE MIR 8 216 -46 348 242 178 32 chr1 104177417 104177574 -138486779 - MIR SINE MIR 0 262 83 1997 105 74 0 chr1 104178012 104178297 -138486056 - AluSx SINE Alu -6 306 1 695 266 123 27 chr1 104179207 104179609 -138484744 - HAL1b LINE L1 -26 6095 891 1707 173 7 23 chr1 104179737 104180044 -138484309 - AluJb SINE Alu -10 302 1 198 344 146 0 chr1 104180333 104180484 -138483869 - MIR3 SINE MIR -15 193 21 409 270 56 34 chr1 104181012 104181190 -138483163 + MIR SINE MIR 70 251 -11 2304 70 3 48 chr1 104181220 104181535 -138482818 - AluSc SINE Alu -7 302 2 2499 68 0 0 chr1 104181545 104181841 -138482512 - AluY SINE Alu -15 296 1 646 222 0 0 chr1 104182211 104182337 -138482016 - FLAM_A SINE Alu -3 130 5 1082 185 59 23 chr1 104182350 104182634 -138481719 - L1MB2 LINE L1 0 6171 5887 3526 168 39 51 chr1 104182794 104183396 -138480957 - L1MB2 LINE L1 -248 5923 5315 2497 97 0 0 chr1 104183396 104183707 -138480646 - AluY SINE Alu 0 311 1 2473 92 0 0 chr1 104183707 104184011 -138480342 - AluSg SINE Alu -6 304 1 3526 168 39 51 chr1 104184011 104184595 -138479758 - L1MB2 LINE L1 -854 5317 4743 2528 48 6 10 chr1 104184999 104185311 -138479042 - AluY SINE Alu 0 311 1 218 255 153 20 chr1 104187801 104187899 -138476454 + MIR3 SINE MIR 64 174 -34 402 218 128 45 chr1 104188421 104188600 -138475753 + MIR SINE MIR 62 255 -7 223 313 131 10 chr1 104190562 104190661 -138473692 - MIR3 SINE MIR -32 176 66 2331 92 20 0 chr1 104190871 104191175 -138473178 + AluSp SINE Alu 1 310 -3 309 212 254 42 chr1 104192150 104192268 -138472085 + MIR SINE MIR 9 151 -111 2120 112 10 10 chr1 104192296 104192599 -138471754 + AluSq SINE Alu 11 313 0 201 283 167 40 chr1 104193410 104193608 -138470745 - L3b LINE CR1 -120 1463 1241 22 0 0 0 chr1 104195182 104195204 -138469149 + AT_rich Low_complexity Low_complexity 1 22 0 1371 213 27 27 chr1 104195445 104195783 -138468570 + MER58B DNA MER1_type 4 341 0 408 281 130 11 chr1 104201203 104201388 -138462965 - L3b LINE CR1 -186 1397 1191 2165 239 119 62 chr1 104201742 104203962 -138460391 - HAL1 LINE L1 -1 2506 62 2168 82 4 7 chr1 104204279 104204599 -138459754 + AluSc SINE Alu 1 319 0 250 26 0 103 chr1 104205149 104205161 -138459192 - MER41B LTR ERV1 -122 513 501 2442 80 0 3 chr1 104205161 104205462 -138458891 + AluSc SINE Alu 1 300 -9 250 26 0 103 chr1 104205462 104205488 -138458865 - MER41B LTR ERV1 -134 501 479 208 326 0 94 chr1 104206197 104206241 -138458112 - MIR SINE MIR -118 144 97 2142 134 0 3 chr1 104206241 104206546 -138457807 + AluSx SINE Alu 1 304 -8 208 326 0 94 chr1 104206546 104206639 -138457714 - MIR SINE MIR -165 97 20 369 285 30 80 chr1 104206856 104207056 -138457297 + MIR SINE MIR 44 233 -29 252 0 0 0 chr1 104208368 104208396 -138455957 + (CTGGGG)n Simple_repeat Simple_repeat 4 31 0 464 187 12 111 chr1 104208396 104208567 -138455786 - MER20 DNA MER1_type -65 154 1 224 209 0 30 chr1 104209119 104209186 -138455167 + L2 LINE L2 2162 2226 -1088 188 296 23 0 chr1 104209320 104209364 -138454989 - L2 LINE L2 -15 3257 3213 2740 267 196 18 chr1 104209463 104211182 -138453171 + L2 LINE L2 1282 3313 0 383 250 83 69 chr1 104211804 104212008 -138452345 + L2 LINE L2 3106 3312 -1 1484 163 101 11 chr1 104213235 104213512 -138450841 + AluJb SINE Alu 11 312 0 2475 61 0 3 chr1 104215029 104215326 -138449027 - AluY SINE Alu -15 296 1 227 361 80 17 chr1 104215376 104215614 -138448739 + MIR SINE MIR 4 256 -6 1001 300 117 7 chr1 104215697 104216151 -138448202 + MLT1J LTR MaLR 5 508 -3 203 182 18 36 chr1 104216606 104216661 -138447692 + MER5C DNA MER1_type 1 54 -270 355 275 22 10 chr1 104216856 104216991 -138447362 + MER5B DNA MER1_type 51 178 0 2423 90 0 0 chr1 104217098 104217397 -138446956 - AluSg SINE Alu -11 299 1 218 344 46 38 chr1 104218128 104218259 -138446094 - L2 LINE L2 -4 3268 3137 530 321 77 20 chr1 104218413 104219028 -138445325 + L2 LINE L2 1665 2407 -907 186 385 14 56 chr1 104219272 104219558 -138444795 + L2 LINE L2 2550 2823 -491 1942 163 41 15 chr1 104221974 104222312 -138442041 + MER7A DNA MER2_type 2 346 0 2250 135 0 0 chr1 104222679 104223026 -138441327 + AluJb SINE Alu 1 347 0 277 277 69 10 chr1 104223043 104223144 -138441209 + MIR3 SINE MIR 77 183 -25 462 82 0 0 chr1 104223581 104223642 -138440711 + Alu SINE Alu 2 62 -256 6761 121 66 60 chr1 104223743 104224611 -138439742 - Tigger1 DNA MER2_type -964 1454 592 2426 75 0 0 chr1 104224611 104224903 -138439450 - AluY SINE Alu -19 292 1 6761 121 66 60 chr1 104224903 104225134 -138439219 - Tigger1 DNA MER2_type -1826 592 345 447 19 0 0 chr1 104225134 104225186 -138439167 + (TG)n Simple_repeat Simple_repeat 1 52 0 6761 121 66 60 chr1 104225186 104225318 -138439035 - Tigger1 DNA MER2_type -2073 345 215 1489 113 0 0 chr1 104225318 104225513 -138438840 + AluSx SINE Alu 1 195 -117 789 177 0 0 chr1 104225553 104225683 -138438670 - MLT1A1 LTR MaLR 0 365 236 832 269 163 21 chr1 104226173 104226764 -138437589 + L1MC4a LINE L1 5217 5400 -746 1035 149 7 7 chr1 104226829 104226983 -138437370 - AluJb SINE Alu -21 291 138 * 1076 181 48 0 chr1 104226982 104227170 -138437183 - AluJo SINE Alu -115 197 1 1798 143 70 3 chr1 104227207 104227493 -138436860 + AluSx SINE Alu 1 305 -7 2362 226 34 21 chr1 104227661 104228196 -138436157 - MLT1F LTR MaLR 0 542 1 1052 196 175 38 chr1 104228752 104229043 -138435310 - MER46C DNA MER2_type -6 332 2 21 0 0 0 chr1 104229181 104229202 -138435151 + AT_rich Low_complexity Low_complexity 1 21 0 458 258 0 8 chr1 104230358 104230478 -138433875 + L2 LINE L2 3195 3313 0 2911 148 64 4 chr1 104231114 104231663 -138432690 - L1MB4 LINE L1 -6 6174 5593 35 41 0 0 chr1 104231663 104231712 -138432641 + AT_rich Low_complexity Low_complexity 1 49 0 263 246 0 0 chr1 104232064 104232125 -138432228 + L1MD3 LINE L1 7626 7686 -309 254 130 0 0 chr1 104232225 104232271 -138432082 + L1MC4a LINE L1 7763 7808 0 1853 187 11 38 chr1 104233433 104233732 -138430621 + MLT1A1 LTR MaLR 1 290 -75 2250 88 40 7 chr1 104233732 104234028 -138430325 - AluY SINE Alu -5 306 1 1853 187 11 38 chr1 104234028 104234097 -138430256 + MLT1A1 LTR MaLR 290 359 -6 2198 123 48 31 chr1 104234207 104234565 -138429788 + THE1B LTR MaLR 1 364 0 2318 108 0 3 chr1 104235501 104235808 -138428545 - AluSq SINE Alu -7 306 1 877 236 24 0 chr1 104236362 104236570 -138427783 + MIR SINE MIR 19 231 -31 24 32 0 0 chr1 104237387 104237418 -138426935 + AT_rich Low_complexity Low_complexity 1 31 0 620 251 42 37 chr1 104237439 104237630 -138426723 + MIR SINE MIR 2 193 -69 24 0 0 0 chr1 104238167 104238191 -138426162 + AT_rich Low_complexity Low_complexity 1 24 0 353 342 24 10 chr1 104239300 104239465 -138424888 + MIR SINE MIR 21 185 -62 33 105 0 0 chr1 104240736 104240860 -138423493 + AT_rich Low_complexity Low_complexity 1 124 0 229 274 195 0 chr1 104242034 104242147 -138422206 + L2 LINE L2 3137 3271 -1 2441 85 7 0 chr1 104242275 104242580 -138421773 - AluSx SINE Alu -5 307 1 205 333 0 0 chr1 104242703 104242754 -138421599 - MIR SINE MIR -161 101 51 202 295 0 13 chr1 104243145 104243223 -138421130 + G-rich Low_complexity Low_complexity 3 79 0 1508 202 3 35 chr1 104244232 104244544 -138419809 - AluJo SINE Alu -10 302 1 470 319 80 11 chr1 104244798 104244986 -138419367 - MIR SINE MIR -31 231 31 2351 105 0 0 chr1 104245000 104245306 -138419047 - AluSx SINE Alu -6 306 1 2058 92 22 7 chr1 104245306 104245579 -138418774 - AluY SINE Alu -34 277 1 1567 115 0 0 chr1 104245590 104245798 -138418555 - AluSg/x SINE Alu -12 298 91 193 402 25 0 chr1 104245909 104246031 -138418322 - L2 LINE L2 -223 3049 2925 2456 239 100 1 chr1 104246536 104247207 -138417146 + MER20B DNA MER1_type 46 782 -1 686 274 6 0 chr1 104247614 104247778 -138416575 - L3 LINE CR1 -349 1228 1064 415 282 20 106 chr1 104248078 104248333 -138416020 - MIR SINE MIR 0 262 30 241 348 37 53 chr1 104248798 104248893 -138415460 - MIR SINE MIR -14 248 156 1790 144 21 21 chr1 104248893 104249184 -138415169 - AluJb SINE Alu -21 291 1 241 348 37 53 chr1 104249184 104249275 -138415078 - MIR SINE MIR -106 156 65 363 243 78 0 chr1 104249337 104249440 -138414913 + MIR3 SINE MIR 63 173 -35 539 278 13 7 chr1 104250936 104251087 -138413266 - Charlie2 DNA MER1_type -2259 603 452 810 237 39 78 chr1 104251644 104251864 -138412489 + L1ME4a LINE L1 5484 5674 -447 1649 104 153 0 chr1 104251864 104252113 -138412240 + AluSp SINE Alu 1 287 -26 810 237 39 78 chr1 104252113 104252330 -138412023 + L1ME4a LINE L1 5674 5898 -223 320 310 18 0 chr1 104253176 104253289 -138411064 + HERV16 LTR ERVL 2716 2830 -2166 262 223 16 166 chr1 104253434 104253641 -138410712 + L1MC/D LINE L1 5668 5835 -394 2248 125 0 0 chr1 104253720 104254023 -138410330 - AluSx SINE Alu -8 304 2 319 296 101 41 chr1 104254316 104254679 -138409674 + LTR16A1 LTR ERVL 73 446 -11 257 282 26 60 chr1 104254699 104254816 -138409537 - MIR SINE MIR -1 261 149 649 218 93 31 chr1 104254823 104255016 -138409337 + MIR SINE MIR 7 211 -51 1119 129 16 52 chr1 104255093 104255287 -138409066 + AluJo SINE Alu 24 210 -102 262 296 25 16 chr1 104255312 104255423 -138408930 - MIR SINE MIR -93 115 4 219 224 20 0 chr1 104256211 104256260 -138408093 - L2 LINE L2 -1 3312 3263 303 71 0 0 chr1 104256345 104256387 -138407966 + (TG)n Simple_repeat Simple_repeat 1 42 0 203 189 74 95 chr1 104256471 104256566 -138407787 - MIR SINE MIR -12 250 158 189 333 12 0 chr1 104257245 104257326 -138407027 + L2 LINE L2 2826 2907 -406 536 75 0 12 chr1 104257335 104257415 -138406938 - MER53 DNA DNA 0 189 111 861 201 143 123 chr1 104257415 104257503 -138406850 + MLT1A1 LTR MaLR 1 86 -279 1658 148 5 119 chr1 104257503 104257880 -138406473 - MER1B DNA MER1_type 0 337 4 861 201 143 123 chr1 104257880 104258149 -138406204 + MLT1A1 LTR MaLR 86 365 0 232 180 66 33 chr1 104258149 104258207 -138406146 + MER53 DNA DNA 85 144 -45 744 277 85 9 chr1 104258278 104258606 -138405747 + L2 LINE L2 2961 3313 0 183 100 0 0 chr1 104258722 104258752 -138405601 + (GA)n Simple_repeat Simple_repeat 1 30 0 876 279 82 42 chr1 104260200 104260674 -138403679 - L2 LINE L2 0 3313 2821 468 221 107 36 chr1 104260710 104260850 -138403503 - MER69A DNA AcHobo -9 168 19 362 183 0 33 chr1 104261594 104261714 -138402639 + CT-rich Low_complexity Low_complexity 1 116 0 246 276 41 31 chr1 104261923 104262021 -138402332 - MIR SINE MIR -148 114 16 193 239 0 0 chr1 104262681 104262727 -138401626 + L2 LINE L2 3263 3308 -5 220 348 4 10 chr1 104262810 104262939 -138401414 - MIR SINE MIR -65 143 30 650 303 28 74 chr1 104262939 104263371 -138400982 + MER34 LTR ERV1 1 412 -130 431 192 0 0 chr1 104263369 104263447 -138400906 + LTR32 LTR ERVL 10 87 -384 * 1445 150 17 17 chr1 104263463 104263703 -138400650 + LTR32 LTR ERVL 232 471 0 312 239 0 43 chr1 104263721 104263813 -138400540 + MER34 LTR ERV1 435 522 -20 300 27 0 0 chr1 104264902 104264939 -138399414 + (TG)n Simple_repeat Simple_repeat 2 38 0 316 263 125 0 chr1 104264948 104265108 -138399245 - L1ME4a LINE L1 -3 6118 5939 437 265 7 29 chr1 104265459 104265595 -138398758 + L2 LINE L2 3181 3313 0 189 416 0 0 chr1 104265605 104265694 -138398659 - L2 LINE L2 0 3272 3184 467 315 30 6 chr1 104265737 104265902 -138398451 + L3 LINE CR1 1404 1572 -5 1053 105 0 0 chr1 104267191 104267353 -138397000 + (TCCA)n Simple_repeat Simple_repeat 1 162 0 203 289 42 84 chr1 104267357 104267499 -138396854 - L2 LINE L2 -1 3271 3136 366 123 0 0 chr1 104268763 104268820 -138395533 + (TG)n Simple_repeat Simple_repeat 2 58 0 309 300 0 0 chr1 104268822 104268912 -138395441 - L1MC4 LINE L1 -1339 6703 6614 1693 180 23 84 chr1 104268993 104269420 -138394933 - MER57A LTR ERV1 0 403 3 276 183 99 14 chr1 104269859 104269930 -138394423 + L2 LINE L2 3168 3244 -28 235 328 16 23 chr1 104271734 104271862 -138392491 - MIR SINE MIR -58 150 24 2088 128 20 0 chr1 104271904 104272209 -138392144 - AluSx SINE Alu -1 311 1 391 299 80 35 chr1 104272652 104272853 -138391500 - MIR SINE MIR 0 262 53 21 0 0 0 chr1 104273549 104273570 -138390783 + AT_rich Low_complexity Low_complexity 1 21 0 390 208 0 50 chr1 104274577 104274678 -138389675 + L2 LINE L2 3217 3312 -1 472 264 334 13 chr1 104276055 104276354 -138387999 - MLT1K LTR MaLR -193 395 1 394 262 0 41 chr1 104277086 104277208 -138387145 + MIR SINE MIR 138 254 -8 22 35 0 0 chr1 104277234 104277263 -138387090 + AT_rich Low_complexity Low_complexity 1 29 0 222 276 76 48 chr1 104277466 104277571 -138386782 - MIR SINE MIR -60 148 41 1676 257 89 67 chr1 104278796 104279379 -138384974 - MLT1F1 LTR MaLR 0 587 1 452 293 80 0 chr1 104279430 104279580 -138384773 + MLT1L LTR MaLR 452 613 -2 415 231 118 153 chr1 104279672 104279993 -138384360 - L2 LINE L2 0 3313 3004 180 231 58 0 chr1 104280102 104280154 -138384199 - L2 LINE L2 -552 2762 2708 31062 62 8 3 chr1 104280158 104284951 -138379402 - L1PA6 LINE L1 0 6154 1338 633 220 6 60 chr1 104284957 104285139 -138379214 - L1MA9 LINE L1 -205 6107 5936 1269 241 0 4 chr1 104285143 104285417 -138378936 + MER82 DNA MER2_type 349 621 -32 1924 144 20 0 chr1 104285556 104285848 -138378505 - AluSx SINE Alu -3 309 12 26 0 0 0 chr1 104286263 104286289 -138378064 + AT_rich Low_complexity Low_complexity 1 26 0 2567 63 0 3 chr1 104287494 104287824 -138376529 - AluY SINE Alu 0 329 1 706 279 39 13 chr1 104288158 104288387 -138375966 + MIR SINE MIR 28 262 0 194 365 40 16 chr1 104289018 104289144 -138375209 - L2 LINE L2 -5 3308 3180 2465 96 0 0 chr1 104289194 104289497 -138374856 - AluSg SINE Alu -7 303 1 200 322 11 44 chr1 104290157 104290247 -138374106 + L3b LINE CR1 1177 1263 -320 1992 117 4 0 chr1 104291548 104291822 -138372531 + AluY SINE Alu 1 275 -36 7359 53 0 2 chr1 104291822 104293419 -138370934 + L1PA5 LINE L1 4558 6153 -1 5829 139 30 4 chr1 104293419 104294394 -138369959 + Ricksha DNA DNA 2246 3245 -6 548 120 0 0 chr1 104294403 104294478 -138369875 - AluS SINE Alu -236 77 3 2823 213 46 44 chr1 104294480 104294533 -138369820 - L1MEc LINE L1 -3001 3214 3163 1111 59 5 43 chr1 104294533 104294719 -138369634 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2823 213 46 44 chr1 104294719 104294761 -138369592 - L1MEc LINE L1 -3052 3163 3123 1641 168 31 62 chr1 104294761 104295082 -138369271 - AluJo SINE Alu -1 311 1 2823 213 46 44 chr1 104295082 104296097 -138368256 - L1MEc LINE L1 -3092 3123 2144 227 247 65 26 chr1 104296764 104296841 -138367512 - MIR SINE MIR -111 97 18 1968 166 69 49 chr1 104298494 104298987 -138365366 + MLT1D LTR MaLR 1 503 -2 1785 171 93 6 chr1 104300439 104300772 -138363581 + MLT1A1 LTR MaLR 1 362 -3 419 270 76 38 chr1 104301259 104301444 -138362909 - MIR SINE MIR -14 248 57 439 282 79 70 chr1 104303143 104303459 -138360894 + LTR16C LTR ERVL 55 373 -118 558 258 99 24 chr1 104305618 104305831 -138358522 + MIR SINE MIR 34 262 0 8764 48 8 11 chr1 104306497 104307569 -138356784 + MER11C LTR ERVK 1 1069 -2 299 276 35 77 chr1 104307676 104307846 -138356507 + MIR3 SINE MIR 42 204 -4 4109 137 14 11 chr1 104308024 104308657 -138355696 - MER41B LTR ERV1 0 635 1 441 241 100 13 chr1 104308764 104308916 -138355437 + MIR SINE MIR 40 208 -54 307 280 43 0 chr1 104308935 104309028 -138355325 + MIR SINE MIR 166 262 0 221 239 22 0 chr1 104309726 104309772 -138354581 - L2 LINE L2 0 3313 3267 231 214 60 83 chr1 104310171 104310255 -138354098 + MER9 LTR ERVK 55 136 -375 500 316 20 20 chr1 104310394 104310546 -138353807 + L3 LINE CR1 1387 1538 -39 408 197 16 87 chr1 104312024 104312151 -138352202 + MIR SINE MIR 17 134 -74 * 793 307 84 45 chr1 104312143 104312623 -138351730 + L2 LINE L2 2164 2624 -648 2146 110 0 0 chr1 104312623 104312915 -138351438 - AluSx SINE Alu -15 297 6 793 307 84 45 chr1 104312915 104313492 -138350861 + L2 LINE L2 2624 3272 0 1830 140 20 128 chr1 104314261 104314667 -138349686 - MLT1A1 LTR MaLR -2 363 2 1749 179 46 46 chr1 104315009 104315399 -138348954 + MLT1B LTR MaLR 1 390 0 326 254 108 65 chr1 104315995 104316227 -138348126 - HAL1 LINE L1 0 2507 2266 350 269 12 53 chr1 104316277 104316448 -138347905 - HAL1b LINE L1 -439 909 746 816 244 161 33 chr1 104317087 104317571 -138346782 - HAL1 LINE L1 -863 1644 1099 343 329 43 22 chr1 104318435 104318584 -138345769 - MIR SINE MIR -73 135 20 734 216 0 61 chr1 104318725 104318906 -138345447 + MIR SINE MIR 45 214 -48 5325 125 39 4 chr1 104319149 104319991 -138344362 + L1PA16 LINE L1 5294 6165 -1 1088 119 59 64 chr1 104321012 104321231 -138343122 + MER20 DNA MER1_type 1 218 -1 188 264 0 57 chr1 104321627 104321680 -138342673 - L2 LINE L2 -35 3237 3188 303 286 11 18 chr1 104321760 104321882 -138342471 - MIR SINE MIR -78 130 12 250 122 20 20 chr1 104322880 104322929 -138341424 + MLT1K LTR MaLR 194 242 -346 4363 99 60 81 chr1 104323044 104323839 -138340514 - MER4E LTR ERV1 0 779 1 224 122 24 0 chr1 104323922 104323963 -138340390 + (CA)n Simple_repeat Simple_repeat 2 43 0 359 275 119 31 chr1 104324541 104324701 -138339652 + L1ME4a LINE L1 5843 6016 -105 2193 86 0 7 chr1 104324817 104325109 -138339244 - AluSc SINE Alu -19 290 1 342 296 50 64 chr1 104325152 104325432 -138338921 + L2 LINE L2 2838 3113 -159 1678 146 24 7 chr1 104326186 104326660 -138337693 + AluJo SINE Alu 1 312 0 1035 139 18 6 chr1 104327336 104327474 -138336879 + AluSg/x SINE Alu 135 277 -35 1857 46 0 0 chr1 104327474 104327693 -138336660 + AluY SINE Alu 1 219 -92 1035 139 18 6 chr1 104327693 104327719 -138336634 + AluSg/x SINE Alu 277 301 -11 523 267 30 0 chr1 104328120 104328251 -138336102 - L2 LINE L2 0 3313 3179 191 245 20 0 chr1 104328434 104328483 -138335870 + L3b LINE CR1 1109 1158 -425 2312 103 0 0 chr1 104328925 104329235 -138335118 + AluSq SINE Alu 1 310 -3 1063 237 190 19 chr1 104329408 104329839 -138334514 + LTR33 LTR ERVL 16 520 -1 319 337 77 20 chr1 104329947 104330143 -138334210 - MIR SINE MIR 0 262 56 180 341 61 12 chr1 104330263 104330345 -138334008 - L2 LINE L2 -76 3196 3111 494 275 88 6 chr1 104330413 104330573 -138333780 + MER63A DNA MER1_type 1 173 -37 674 223 78 16 chr1 104330748 104330910 -138333443 + MER33 DNA MER1_type 1 174 -150 1323 138 44 6 chr1 104330910 104331343 -138333010 + LTR54 LTR ERV1 1 510 0 669 141 67 0 chr1 104331343 104331492 -138332861 + MER33 DNA MER1_type 205 363 0 242 330 251 12 chr1 104331498 104331913 -138332440 - L2 LINE L2 -529 2785 2272 * 1069 298 99 12 chr1 104331912 104332653 -138331700 + L2 LINE L2 2509 3313 0 714 306 27 9 chr1 104332658 104332877 -138331476 + MIR SINE MIR 1 223 -39 207 212 106 15 chr1 104332895 104332961 -138331392 + MIR SINE MIR 181 252 -10 1032 209 74 70 chr1 104332974 104333315 -138331038 + MSTD LTR MaLR 11 347 -49 944 143 14 0 chr1 104333315 104333494 -138330859 + AluJb SINE Alu 134 314 0 415 93 0 0 chr1 104333494 104333548 -138330805 + MSTD LTR MaLR 343 396 0 402 154 0 77 chr1 104334627 104334705 -138329648 + Tigger5 DNA MER2_type 3 74 -2249 250 245 19 0 chr1 104334706 104334759 -138329594 - Tigger5 DNA MER2_type -5 2318 2265 238 200 36 18 chr1 104334711 104334766 -138329587 + Tigger5 DNA MER2_type 2268 2323 0 * 307 291 4 40 chr1 104334790 104334938 -138329415 - L1ME3 LINE L1 -62 6108 5963 818 303 14 9 chr1 104334971 104335192 -138329161 + MIR SINE MIR 2 223 -39 255 250 110 30 chr1 104335823 104335923 -138328430 - L1ME4a LINE L1 -46 6075 5968 520 325 66 16 chr1 104336619 104336862 -138327491 - MIR SINE MIR -1 261 7 2014 120 0 3 chr1 104336972 104337254 -138327099 + AluSg SINE Alu 1 283 -27 270 0 0 0 chr1 104337254 104337284 -138327069 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2014 120 0 3 chr1 104337284 104337301 -138327052 + AluSg SINE Alu 283 299 -11 308 337 52 15 chr1 104338456 104338626 -138325727 + MER20B DNA MER1_type 30 202 -17 4440 83 0 0 chr1 104339571 104340125 -138324228 - MER41A LTR ERV1 0 554 1 5901 115 36 3 chr1 104340541 104341421 -138322932 + MER49 LTR ERV1 1 909 -14 1589 268 75 27 chr1 104341489 104342012 -138322341 - MLT1K LTR MaLR -27 561 14 2145 103 0 41 chr1 104342183 104342503 -138321850 + AluSg SINE Alu 1 307 -3 304 306 128 55 chr1 104342619 104342838 -138321515 + MIR SINE MIR 20 254 -8 301 336 0 14 chr1 104344892 104345035 -138319318 + GA-rich Low_complexity Low_complexity 1 141 0 477 216 204 24 chr1 104345113 104345280 -138319073 - L2 LINE L2 -23 3290 3094 1474 172 28 32 chr1 104345289 104345574 -138318779 + AluJo SINE Alu 22 305 -7 458 162 0 0 chr1 104345648 104345722 -138318631 - MER92C LTR ERV1 0 554 481 268 220 101 64 chr1 104345786 104345895 -138318458 - MER92C LTR ERV1 -385 169 57 547 288 102 19 chr1 104346080 104346295 -138318058 - MLT1J2 LTR MaLR -217 233 1 323 326 49 90 chr1 104346297 104346641 -138317712 + L2 LINE L2 2943 3272 0 2393 59 3 7 chr1 104347334 104347637 -138316716 + AluY SINE Alu 1 302 -9 339 309 44 22 chr1 104348202 104348338 -138316015 - MIR SINE MIR -1 261 123 243 303 11 0 chr1 104348472 104348561 -138315792 + L2 LINE L2 2519 2608 -706 356 279 19 10 chr1 104348569 104348673 -138315680 - MIR SINE MIR 0 262 158 555 271 71 0 chr1 104348766 104348921 -138315432 - MIR SINE MIR -95 167 2 1028 286 74 49 chr1 104348932 104349611 -138314742 + L2 LINE L2 2615 3313 0 247 244 209 0 chr1 104349760 104349846 -138314507 - MIR SINE MIR -9 253 150 322 348 52 7 chr1 104351213 104351348 -138313005 - MIR SINE MIR -88 174 34 249 33 0 0 chr1 104352691 104352721 -138311632 + (TA)n Simple_repeat Simple_repeat 2 31 0 253 348 148 39 chr1 104352984 104353289 -138311064 + L2 LINE L2 2926 3263 -9 1736 264 51 31 chr1 104353706 104354008 -138310345 + MLT1J LTR MaLR 5 322 -189 1988 112 0 51 chr1 104354008 104354321 -138310032 + AluSc SINE Alu 1 297 -12 1736 264 51 31 chr1 104354321 104354507 -138309846 + MLT1J LTR MaLR 322 503 -8 1560 175 55 0 chr1 104354623 104354915 -138309438 + AluJb SINE Alu 4 311 -1 519 328 60 30 chr1 104355124 104355359 -138308994 - MIR SINE MIR -13 249 8 1825 168 3 0 chr1 104355866 104356175 -138308178 + AluSx SINE Alu 1 310 -2 1866 113 62 3 chr1 104357444 104357735 -138306618 + AluSx SINE Alu 1 308 -4 333 304 98 0 chr1 104358534 104358626 -138305727 - L2 LINE L2 -1 3271 3171 1946 99 9 65 chr1 104358633 104358956 -138305397 - MER1B DNA MER1_type 0 339 35 931 262 191 11 chr1 104359025 104359392 -138304961 - LTR16A LTR ERVL 0 450 18 312 315 73 19 chr1 104359909 104360104 -138304249 + MIR3 SINE MIR 4 208 -54 1649 176 4 4 chr1 104361314 104361587 -138302766 + AluJb SINE Alu 1 273 -39 252 0 0 0 chr1 104361819 104361847 -138302506 + (T)n Simple_repeat Simple_repeat 1 28 0 2137 106 7 7 chr1 104363765 104364083 -138300270 - AluSx SINE Alu 0 318 1 1358 161 4 47 chr1 104364156 104364411 -138299942 + AluJo SINE Alu 1 244 -68 688 261 144 25 chr1 104365800 104366160 -138298193 - L1ME3 LINE L1 0 6162 5760 24 0 0 0 chr1 104367477 104367501 -138296852 + AT_rich Low_complexity Low_complexity 1 24 0 657 234 51 0 chr1 104367660 104367835 -138296518 - MIR SINE MIR -75 187 4 291 309 31 56 chr1 104368589 104368751 -138295602 - MIR3 SINE MIR -5 203 46 248 317 0 0 chr1 104369263 104369345 -138295008 - MIR SINE MIR -98 110 29 2370 105 0 3 chr1 104369439 104369752 -138294601 + AluSx SINE Alu 1 312 0 1727 168 46 61 chr1 104369849 104369964 -138294389 + MLT1B LTR MaLR 3 118 -272 2348 102 0 10 chr1 104369964 104370269 -138294084 + AluSc SINE Alu 1 302 -7 1727 168 46 61 chr1 104370269 104370547 -138293806 + MLT1B LTR MaLR 118 390 0 5493 197 75 22 chr1 104370992 104372261 -138292092 + L1M4 LINE L1 -256 1079 -5201 22793 171 23 46 chr1 104372261 104375687 -138288666 + L1PA11 LINE L1 3 3506 -4106 2199 86 6 77 chr1 104375687 104376023 -138288330 + AluSp SINE Alu 1 312 -1 22793 171 23 46 chr1 104376023 104376451 -138287902 + L1PA11 LINE L1 3506 3942 -3670 2445 62 7 3 chr1 104376451 104376758 -138287595 + AluY SINE Alu 1 308 -3 22793 171 23 46 chr1 104376758 104379614 -138284739 + L1PA11 LINE L1 3942 7591 -21 2399 201 47 45 chr1 104379617 104380279 -138284074 + L1M4 LINE L1 1045 1707 -4677 3138 86 20 9 chr1 104380279 104380722 -138283631 + LTR7 LTR ERV1 1 448 -2 14231 126 11 37 chr1 104380724 104382016 -138282337 + HERVH LTR ERV1 1 1325 -6388 2387 93 0 0 chr1 104382016 104382316 -138282037 + AluY SINE Alu 1 300 -11 14231 126 11 37 chr1 104382316 104383929 -138280424 + HERVH LTR ERV1 1325 2995 -4718 963 126 7 7 chr1 104383908 104384059 -138280294 + HERVH LTR ERV1 3140 3290 -4423 * 9883 109 33 79 chr1 104384049 104385786 -138278567 + HERVH LTR ERV1 3492 5149 -2564 2807 110 14 14 chr1 104385803 104386240 -138278113 + HERVH LTR ERV1 7277 7713 0 2013 107 25 9 chr1 104386240 104386630 -138277723 + LTR7 LTR ERV1 1 443 -7 580 249 161 61 chr1 104386638 104387050 -138277303 + L1M4 LINE L1 1719 2213 -4171 192 228 0 18 chr1 104387205 104387262 -138277091 - L2 LINE L2 0 3272 3217 444 284 219 35 chr1 104387430 104387800 -138276553 - L2 LINE L2 -4 3309 2872 352 219 81 47 chr1 104388122 104388369 -138275984 - L2 LINE L2 -71 3242 2921 606 326 64 3 chr1 104388994 104389276 -138275077 - L2 LINE L2 -2 3311 3013 200 111 28 0 chr1 104389286 104389322 -138275031 + A-rich Low_complexity Low_complexity 5 41 0 3157 139 52 8 chr1 104390282 104390787 -138273566 + MER1A DNA MER1_type 1 527 0 812 257 100 76 chr1 104391100 104391759 -138272594 - L2 LINE L2 -1 3312 2631 1216 169 39 99 chr1 104391910 104392001 -138272352 + MER33 DNA MER1_type 13 108 -2477 2499 60 7 10 chr1 104392001 104392302 -138272051 + AluY SINE Alu 1 300 -11 1216 169 39 99 chr1 104392302 104392542 -138271811 + MER33 DNA MER1_type 108 324 0 3078 50 8 5 chr1 104393553 104393936 -138270417 - L1PA6 LINE L1 -1 6153 5770 4687 110 34 6 chr1 104393955 104394662 -138269691 - L1PA16 LINE L1 0 6166 5440 263 125 42 0 chr1 104394675 104394723 -138269630 + L1P LINE L1 5356 5405 -761 204 40 0 0 chr1 104395268 104395293 -138269060 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 40 0 0 0 chr1 104395568 104395608 -138268745 + AT_rich Low_complexity Low_complexity 1 40 0 1970 126 7 3 chr1 104395898 104396213 -138268140 + AluSq SINE Alu 1 316 0 298 280 38 45 chr1 104396644 104396801 -138267552 - MIR SINE MIR -71 191 36 687 262 75 21 chr1 104397295 104397755 -138266598 - LTR33A LTR ERVL 0 523 3 247 276 58 0 chr1 104398330 104398417 -138265936 - L2 LINE L2 -1 3312 3221 572 282 10 34 chr1 104400665 104400874 -138263479 + MIR SINE MIR 15 218 -44 252 0 0 0 chr1 104402723 104402751 -138261602 + (CA)n Simple_repeat Simple_repeat 2 29 0 674 275 58 10 chr1 104403745 104403952 -138260401 + MIR SINE MIR 8 224 -38 2420 157 23 5 chr1 104404336 104404730 -138259623 + Tigger1 DNA MER2_type 2018 2418 0 1676 203 46 3 chr1 104404823 104405173 -138259180 + MLT1A1 LTR MaLR 1 365 0 265 267 67 19 chr1 104405287 104405392 -138258961 - L2 LINE L2 -22 3250 3141 1460 160 109 48 chr1 104405694 104406025 -138258328 - MLT1A1 LTR MaLR 0 365 15 2167 105 10 7 chr1 104406768 104407074 -138257279 + AluSp SINE Alu 2 308 -5 305 263 95 0 chr1 104407108 104407203 -138257150 + L2 LINE L2 3210 3313 0 207 259 171 47 chr1 104408947 104409117 -138255236 + MIR3 SINE MIR 15 205 -3 250 206 14 27 chr1 104411217 104411290 -138253063 + G-rich Low_complexity Low_complexity 3 74 0 341 315 25 0 chr1 104414367 104414489 -138249864 - MIR SINE MIR -64 144 11 538 293 78 16 chr1 104416055 104416246 -138248107 + MIR SINE MIR 60 262 0 442 279 127 24 chr1 104416469 104416634 -138247719 + MIR SINE MIR 7 188 -74 501 174 245 0 chr1 104416659 104416757 -138247596 + FLAM_C SINE Alu 2 123 -20 646 156 213 0 chr1 104418507 104418667 -138245686 + MER33 DNA MER1_type 6 199 -125 1909 109 71 129 chr1 104418668 104418921 -138245432 - Tigger2 DNA MER2_type 0 2718 2503 2253 121 0 9 chr1 104418921 104419236 -138245117 + AluSx SINE Alu 1 312 0 1909 109 71 129 chr1 104419236 104419448 -138244905 - Tigger2 DNA MER2_type -215 2503 2280 435 159 0 0 chr1 104419446 104419515 -138244838 - Tigger2 DNA MER2_type -2649 69 1 * 685 120 8 8 chr1 104419517 104419642 -138244711 + MER33 DNA MER1_type 238 362 -1 316 272 128 72 chr1 104420101 104420281 -138244072 + MIR3 SINE MIR 2 191 -17 237 289 0 0 chr1 104421006 104421058 -138243295 - L2 LINE L2 -20 3252 3201 2190 138 0 0 chr1 104421486 104421797 -138242556 + AluSx SINE Alu 2 312 0 2295 102 3 3 chr1 104422988 104423291 -138241062 - AluSx SINE Alu -9 303 1 21 36 0 0 chr1 104423721 104423749 -138240604 + AT_rich Low_complexity Low_complexity 1 28 0 292 274 80 111 chr1 104423829 104424117 -138240236 - MLT1I LTR MaLR -26 383 105 2039 118 45 0 chr1 104425641 104425928 -138238425 - AluSx SINE Alu -12 300 1 387 328 85 24 chr1 104426288 104426535 -138237818 + MLT1K LTR MaLR 154 415 -173 283 221 56 9 chr1 104426698 104426814 -138237539 + MLT1L LTR MaLR 455 606 -9 1631 281 64 55 chr1 104426953 104427749 -138236604 + L2 LINE L2 1920 2722 -592 939 262 55 15 chr1 104427808 104428079 -138236274 + MLT2E LTR ERVL 19 300 -328 1889 127 22 54 chr1 104428898 104429213 -138235140 - AluSx SINE Alu -7 305 1 21 36 0 0 chr1 104429523 104429551 -138234802 + AT_rich Low_complexity Low_complexity 1 28 0 778 193 133 18 chr1 104429698 104429864 -138234489 + MER5A DNA MER1_type 5 189 0 283 171 83 5 chr1 104430073 104430145 -138234208 - MLT1K LTR MaLR 0 615 517 497 222 257 0 chr1 104430824 104430968 -138233385 + MER5A DNA MER1_type 9 189 0 285 297 190 71 chr1 104431476 104431745 -138232608 - L2 LINE L2 -22 3250 2950 585 204 105 0 chr1 104432132 104432313 -138232040 - L1M4 LINE L1 -3614 2532 2333 800 226 176 23 chr1 104432368 104432766 -138231587 + L1ME3A LINE L1 5315 5773 -397 346 226 0 12 chr1 104432781 104432865 -138231488 - Tigger5 DNA MER2_type -1 2322 2240 238 211 0 35 chr1 104432878 104432935 -138231418 - Tigger5 DNA MER2_type -2268 55 1 596 221 181 40 chr1 104432935 104433211 -138231142 + L1ME3A LINE L1 5792 6106 -64 347 226 66 9 chr1 104433303 104433409 -138230944 + HAL1 LINE L1 2285 2396 -111 181 280 37 65 chr1 104436796 104436903 -138227450 - MIR SINE MIR -49 213 110 459 183 0 25 chr1 104437156 104437276 -138227077 + GA-rich Low_complexity Low_complexity 4 120 0 582 303 48 0 chr1 104438388 104438616 -138225737 - MER46C DNA MER2_type -99 239 1 886 150 44 84 chr1 104438676 104438902 -138225451 + MER20 DNA MER1_type 1 217 -2 501 250 250 0 chr1 104440002 104440146 -138224207 - MER5A DNA MER1_type 0 189 10 209 268 0 0 chr1 104440812 104440853 -138223500 + polypurine Low_complexity Low_complexity 4 44 0 34819 32 1 1 chr1 104440861 104446091 -138218262 + L1PA3 LINE L1 919 6151 -4 22 70 0 0 chr1 104446091 104446134 -138218219 + AT_rich Low_complexity Low_complexity 1 43 0 408 348 67 13 chr1 104446953 104447177 -138217176 - L1MC/D LINE L1 -2251 5557 5322 1153 301 66 80 chr1 104447214 104447571 -138216782 + L2 LINE L2 1902 2262 -1052 1449 184 10 52 chr1 104447571 104447876 -138216477 + AluJo SINE Alu 1 292 -20 1153 301 66 80 chr1 104447876 104448497 -138215856 + L2 LINE L2 2262 2867 -447 1765 136 7 45 chr1 104448690 104448874 -138215479 + AluSx SINE Alu 24 195 -117 2376 114 0 0 chr1 104448874 104449181 -138215172 + AluSg SINE Alu 1 307 -3 1765 136 7 45 chr1 104449181 104449282 -138215071 + AluSx SINE Alu 195 298 -14 1572 118 9 0 chr1 104449914 104450142 -138214211 + MER30 DNA MER1_type 1 230 0 585 299 15 78 chr1 104450144 104450289 -138214064 + MIR SINE MIR 9 131 -131 2228 104 0 10 chr1 104450289 104450587 -138213766 + AluSx SINE Alu 5 299 -13 585 299 15 78 chr1 104450587 104450712 -138213641 + MIR SINE MIR 131 262 0 888 130 0 0 chr1 104451800 104451931 -138212422 - AluSg/x SINE Alu -6 306 176 1175 165 31 22 chr1 104452620 104452844 -138211509 - AluJo SINE Alu -6 306 81 1467 179 51 26 chr1 104454714 104454987 -138209366 + AluJo SINE Alu 2 281 -31 542 282 8 29 chr1 104455107 104455348 -138209005 - L1MC4a LINE L1 -1876 5932 5697 624 273 55 146 chr1 104455714 104456102 -138208251 - L2 LINE L2 -5 3308 2982 1700 94 0 0 chr1 104456102 104456315 -138208038 + AluSg/x SINE Alu 84 296 -14 624 273 55 146 chr1 104456315 104456531 -138207822 - L2 LINE L2 -331 2982 2748 2420 136 54 7 chr1 104456532 104456606 -138207747 + L1MB4 LINE L1 5705 5774 -406 243 0 0 0 chr1 104456606 104456633 -138207720 + (CA)n Simple_repeat Simple_repeat 2 28 0 2420 136 54 7 chr1 104456633 104457000 -138207353 + L1MB4 LINE L1 5774 6167 -13 1415 185 16 8 chr1 104457998 104458252 -138206101 - AluJb SINE Alu -24 288 33 7672 18 11 5 chr1 104458980 104460102 -138204251 - L1PA3 LINE L1 -3 6152 5030 982 184 45 5 chr1 104460906 104461107 -138203246 - MER3 DNA MER1_type 0 209 1 5141 148 28 44 chr1 104461935 104462986 -138201367 + L1MA9 LINE L1 5263 6296 -16 622 173 83 8 chr1 104464029 104464162 -138200191 + L1MA10 LINE L1 6179 6321 -13 216 67 0 0 chr1 104464236 104464266 -138200087 + (GA)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr1 104465046 104465071 -138199282 + AT_rich Low_complexity Low_complexity 1 25 0 244 158 0 0 chr1 104465626 104465664 -138198689 - L2 LINE L2 -1 3271 3234 928 328 91 14 chr1 104466164 104466603 -138197750 + L2 LINE L2 2804 3276 -37 738 285 69 33 chr1 104466598 104466745 -138197608 - L2 LINE L2 -16 3297 3157 * 1647 113 57 85 chr1 104466745 104466888 -138197465 + MER2 DNA MER2_type 1 147 -197 2198 98 0 0 chr1 104466888 104467175 -138197178 - AluSx SINE Alu -25 287 1 1647 113 57 85 chr1 104467175 104467385 -138196968 + MER2 DNA MER2_type 147 344 0 738 285 69 33 chr1 104467385 104467542 -138196811 - L2 LINE L2 -156 3157 2982 379 293 49 16 chr1 104467731 104467854 -138196499 + L2 LINE L2 3185 3311 -2 993 237 37 19 chr1 104467956 104468171 -138196182 + MER58A DNA MER1_type 6 224 0 6945 56 7 0 chr1 104468283 104469586 -138194767 - L1PA5 LINE L1 0 6154 4847 216 67 0 0 chr1 104469742 104469772 -138194581 + (TG)n Simple_repeat Simple_repeat 2 31 0 272 374 61 0 chr1 104470511 104470626 -138193727 - MIR SINE MIR -121 141 20 780 279 132 52 chr1 104471078 104471631 -138192722 + MLT1L LTR MaLR 9 605 -10 476 307 127 28 chr1 104471832 104472044 -138192309 - MIR SINE MIR -10 252 20 213 400 170 15 chr1 104473435 104473635 -138190718 + L2 LINE L2 3017 3247 -25 868 120 8 8 chr1 104474383 104474516 -138189837 - FLAM_C SINE Alu 0 133 1 1325 125 217 0 chr1 104475499 104475739 -138188614 - AluJb SINE Alu -10 292 1 243 0 0 0 chr1 104475829 104475856 -138188497 + (T)n Simple_repeat Simple_repeat 1 27 0 180 176 0 0 chr1 104476142 104476176 -138188177 + (CATA)n Simple_repeat Simple_repeat 1 34 0 207 69 0 0 chr1 104476177 104476206 -138188147 + (GA)n Simple_repeat Simple_repeat 2 30 0 25 31 0 0 chr1 104477167 104477199 -138187154 + AT_rich Low_complexity Low_complexity 1 32 0 269 275 214 8 chr1 104477563 104477694 -138186659 - MIR3 SINE MIR -4 204 47 27 0 0 0 chr1 104477803 104477830 -138186523 + AT_rich Low_complexity Low_complexity 1 27 0 388 204 102 0 chr1 104478867 104478955 -138185398 + MER20 DNA MER1_type 41 137 -82 779 201 128 17 chr1 104479760 104479939 -138184414 - MER58A DNA MER1_type -19 205 7 24 32 0 0 chr1 104480064 104480095 -138184258 + AT_rich Low_complexity Low_complexity 1 31 0 481 227 23 16 chr1 104480377 104480505 -138183848 + MER103 DNA DNA 15 143 -23 1250 201 5 0 chr1 104481599 104481808 -138182545 - AluJo SINE Alu -102 210 1 26 30 0 0 chr1 104481903 104481936 -138182417 + AT_rich Low_complexity Low_complexity 1 33 0 1127 243 211 16 chr1 104481981 104482545 -138181808 + HAL1 LINE L1 745 1418 -1089 548 178 0 40 chr1 104482705 104482806 -138181547 + MER5B DNA MER1_type 79 175 -3 1885 267 50 66 chr1 104482807 104483148 -138181205 + HAL1 LINE L1 1536 1881 -626 2145 85 0 0 chr1 104483148 104483420 -138180933 + AluY SINE Alu 30 301 -10 1885 267 50 66 chr1 104483420 104484052 -138180301 + HAL1 LINE L1 1881 2494 -13 361 347 35 35 chr1 104484776 104484946 -138179407 + L2 LINE L2 3102 3271 -1 315 342 71 26 chr1 104485336 104485491 -138178862 - MIR3 SINE MIR -15 193 32 186 141 0 169 chr1 104485648 104485719 -138178634 - L2 LINE L2 -93 3220 3162 255 155 17 35 chr1 104486939 104486997 -138177356 + L1ME4a LINE L1 6064 6120 -1 2070 153 97 3 chr1 104487791 104488182 -138176171 + MSTA LTR MaLR 1 428 0 450 326 43 36 chr1 104488472 104488728 -138175625 - L2 LINE L2 -271 3042 2789 422 334 145 26 chr1 104488877 104489301 -138175052 - L2 LINE L2 -81 3232 2753 209 121 30 0 chr1 104489694 104489727 -138174626 - MIR SINE MIR -28 234 201 183 284 126 11 chr1 104489968 104490063 -138174290 - L2 LINE L2 0 3313 3208 26 0 0 0 chr1 104490869 104490895 -138173458 + AT_rich Low_complexity Low_complexity 1 26 0 388 296 115 49 chr1 104491141 104491428 -138172925 + L1MC/D LINE L1 5515 5820 -1988 1119 332 118 52 chr1 104492228 104492925 -138171428 + L3 LINE CR1 122 915 -662 3162 141 32 11 chr1 104492925 104493480 -138170873 + L1MB7 LINE L1 5610 6176 -8 1119 332 118 52 chr1 104493480 104493853 -138170500 + L3 LINE CR1 915 1262 -315 820 198 11 39 chr1 104493874 104494056 -138170297 + FRAM SINE Alu 1 176 0 394 138 11 23 chr1 104494059 104494146 -138170207 + G-rich Low_complexity Low_complexity 4 89 0 223 323 86 32 chr1 104494274 104494367 -138169986 + L3 LINE CR1 1478 1575 -2 438 250 114 38 chr1 104494762 104494946 -138169407 + MLT1H LTR MaLR 100 297 -252 258 233 33 0 chr1 104494946 104495006 -138169347 - MIR SINE MIR -113 149 88 527 278 64 58 chr1 104495246 104495592 -138168761 - LTR16A LTR ERVL -78 372 25 5253 108 21 17 chr1 104495878 104496505 -138167848 + L1MA9 LINE L1 5187 5934 -378 1978 146 0 9 chr1 104496505 104496820 -138167533 + AluSx SINE Alu 1 312 0 5253 108 21 17 chr1 104496820 104497130 -138167223 + L1MA9 LINE L1 5934 6241 -71 2320 104 3 0 chr1 104497459 104497757 -138166596 + AluSp SINE Alu 2 300 -13 25 0 0 0 chr1 104498064 104498089 -138166264 + AT_rich Low_complexity Low_complexity 1 25 0 2169 135 0 0 chr1 104498131 104498428 -138165925 + AluSx SINE Alu 1 297 -15 289 317 164 73 chr1 104498567 104498964 -138165389 + L2 LINE L2 2244 2676 -638 271 281 0 22 chr1 104498973 104499062 -138165291 + (CATATA)n Simple_repeat Simple_repeat 1 87 0 469 284 207 22 chr1 104499064 104499465 -138164888 + L1M4 LINE L1 2951 3425 -2721 2529 47 7 0 chr1 104499465 104499765 -138164588 + AluY SINE Alu 1 302 -9 1953 118 0 4 chr1 104500072 104500369 -138163984 + AluSx SINE Alu 28 312 0 24 67 0 0 chr1 104500472 104500517 -138163836 + AT_rich Low_complexity Low_complexity 1 45 0 286 318 11 0 chr1 104500531 104500619 -138163734 + L2 LINE L2 2764 2852 -462 347 179 39 13 chr1 104500653 104500731 -138163622 + MER116 DNA Mariner 1 80 0 551 216 18 0 chr1 104500876 104500987 -138163366 - MER94 DNA DNA -20 114 2 206 333 114 57 chr1 104501287 104501497 -138162856 - L2 LINE L2 -872 2442 2221 367 359 87 15 chr1 104501614 104501879 -138162474 + L1MEd LINE L1 541 824 -5295 3390 78 60 8 chr1 104502293 104502779 -138161574 - MER9 LTR ERVK 0 511 1 9417 97 5 5 chr1 104502779 104504424 -138159929 - HERVK9 LTR ERVK 0 8048 4369 * 22541 79 14 3 chr1 104504422 104507385 -138156968 - HERVK9 LTR ERVK -1997 3919 927 2510 86 64 34 chr1 104507373 104507781 -138156572 - HERVK9 LTR ERVK -5496 420 1 * 3147 119 8 10 chr1 104507781 104508260 -138156093 - MER9 LTR ERVK 0 511 34 313 156 117 169 chr1 104508409 104508563 -138155790 + L1M4 LINE L1 2888 3033 -3113 26 0 0 0 chr1 104508589 104508615 -138155738 + AT_rich Low_complexity Low_complexity 1 26 0 709 181 47 0 chr1 104508615 104508727 -138155626 + AluJo/FLAM SINE Alu 1 121 -191 2234 113 0 3 chr1 104508727 104509028 -138155325 - AluSc SINE Alu -9 300 1 709 181 47 0 chr1 104509028 104509042 -138155311 + AluJo/FLAM SINE Alu 121 133 -179 386 224 140 21 chr1 104509045 104509188 -138155165 + L1M4 LINE L1 3134 3293 -2853 5703 133 28 23 chr1 104509254 104510593 -138153760 + L1PB4 LINE L1 4807 6143 -13 23 0 0 0 chr1 104510619 104510642 -138153711 + AT_rich Low_complexity Low_complexity 1 23 0 1210 202 87 7 chr1 104510846 104511179 -138153174 - L1MD3 LINE L1 0 8042 7696 753 238 98 10 chr1 104511176 104512079 -138152274 - L1MC4a LINE L1 -863 5283 5024 * 926 203 0 0 chr1 104513047 104513205 -138151148 + FAM SINE Alu 1 158 -17 209 229 0 52 chr1 104513299 104513395 -138150958 + A-rich Low_complexity Low_complexity 1 91 0 1899 135 46 0 chr1 104513439 104513720 -138150633 - AluSx SINE Alu -18 294 1 599 289 94 11 chr1 104513740 104514100 -138150253 + HAL1b LINE L1 346 735 -613 10518 120 47 17 chr1 104514136 104514736 -138149617 - Tigger1 DNA MER2_type -8 2410 1829 483 18 0 0 chr1 104514736 104514792 -138149561 + (TG)n Simple_repeat Simple_repeat 1 56 0 2181 87 4 4 chr1 104514792 104515068 -138149285 - AluSc SINE Alu -33 276 1 10518 120 47 17 chr1 104515068 104516287 -138148066 - Tigger1 DNA MER2_type -588 1830 536 1632 129 8 0 chr1 104516290 104516554 -138147799 - Tigger1 DNA MER2_type -2151 267 2 2047 218 52 93 chr1 104516885 104517537 -138146816 + L1MC5 LINE L1 6633 7239 -722 1642 167 36 11 chr1 104517537 104517818 -138146535 - AluJo SINE Alu -24 288 1 2047 218 52 93 chr1 104517818 104518082 -138146271 + L1MC5 LINE L1 7239 7512 -449 504 216 39 67 chr1 104518181 104518389 -138145964 + L1ME3A LINE L1 5963 6164 -6 2427 143 85 0 chr1 104518426 104518873 -138145480 + Tigger3b DNA MER2_type 1 485 -746 2592 111 32 49 chr1 104518894 104519127 -138145226 + Tigger3b DNA MER2_type 772 1007 -2021 1790 163 0 28 chr1 104519127 104519447 -138144906 + AluSx SINE Alu 1 311 -1 2592 111 32 49 chr1 104519447 104519622 -138144731 + Tigger3b DNA MER2_type 1007 1183 -1845 2165 111 3 0 chr1 104519622 104519920 -138144433 + AluSq SINE Alu 1 299 -14 2383 89 0 10 chr1 104519920 104520224 -138144129 + AluSg SINE Alu 1 301 -9 2592 111 32 49 chr1 104520224 104520280 -138144073 + Tigger3b DNA MER2_type 1181 1230 -1 397 262 115 8 chr1 104520482 104520604 -138143749 + MIR SINE MIR 125 259 -3 249 270 100 30 chr1 104520615 104520715 -138143638 + L2 LINE L2 2871 2977 -295 1150 157 17 0 chr1 104521322 104521500 -138142853 + AluJb SINE Alu 107 287 -25 21 0 0 0 chr1 104521513 104521534 -138142819 + AT_rich Low_complexity Low_complexity 1 21 0 206 359 58 29 chr1 104521599 104521702 -138142651 + L2 LINE L2 3141 3246 -26 370 69 10 186 chr1 104522027 104522129 -138142224 - HsTC2 DNA Tc2 -1813 85 2 24 53 0 0 chr1 104522223 104522261 -138142092 + AT_rich Low_complexity Low_complexity 1 38 0 2182 104 61 17 chr1 104522341 104522686 -138141667 - THE1B LTR MaLR -4 360 1 11872 87 12 0 chr1 104522686 104524247 -138140106 - THE1B-int LTR MaLR 0 1580 1 1651 109 78 21 chr1 104524247 104524531 -138139822 - THE1B LTR MaLR 0 364 65 255 31 0 0 chr1 104524976 104525008 -138139345 + (A)n Simple_repeat Simple_repeat 1 32 0 588 222 8 17 chr1 104525302 104525419 -138138934 + AluSq/x SINE Alu 1 116 -197 255 367 51 32 chr1 104525548 104525706 -138138647 + L3 LINE CR1 227 387 -1190 225 305 64 28 chr1 104526014 104526155 -138138198 + L3 LINE CR1 575 720 -857 198 0 0 0 chr1 104526206 104526228 -138138125 + (A)n Simple_repeat Simple_repeat 1 22 0 2239 104 0 7 chr1 104526232 104526529 -138137824 + AluSx SINE Alu 1 295 -17 200 332 101 35 chr1 104526644 104526843 -138137510 + L3 LINE CR1 969 1180 -397 190 211 0 0 chr1 104526851 104526889 -138137464 + L3 LINE CR1 1540 1577 0 475 259 148 37 chr1 104527024 104527240 -138137113 - MIR SINE MIR -20 242 3 588 291 149 60 chr1 104527248 104527887 -138136466 + L1ME4a LINE L1 5361 6056 -65 1023 238 80 75 chr1 104528117 104528360 -138135993 - L2 LINE L2 -12 3301 3054 1832 172 20 0 chr1 104528360 104528662 -138135691 + AluJo SINE Alu 1 308 -4 1023 238 80 75 chr1 104528662 104528805 -138135548 - L2 LINE L2 -259 3054 2913 492 399 18 11 chr1 104529833 104530116 -138134237 - L2 LINE L2 -198 3074 2791 207 300 32 146 chr1 104530458 104530571 -138133782 - L2 LINE L2 -81 3191 3113 2091 125 43 15 chr1 104530571 104530899 -138133454 - MER1B DNA MER1_type 0 337 1 207 300 32 146 chr1 104530899 104531005 -138133348 - L2 LINE L2 -159 3113 2997 249 147 6 6 chr1 104531010 104531066 -138133287 + Alu SINE Alu 2 39 -260 261 0 0 0 chr1 104531485 104531514 -138132839 + (CA)n Simple_repeat Simple_repeat 2 30 0 407 249 86 34 chr1 104531633 104531842 -138132511 + L1ME2 LINE L1 5935 6154 -10 636 174 105 32 chr1 104532760 104532950 -138131403 + L1ME3A LINE L1 5949 6152 -18 3265 91 0 0 chr1 104534169 104534622 -138129731 + THE1-int LTR MaLR 815 1267 -313 207 0 0 0 chr1 104534772 104534795 -138129558 + (CGG)n Simple_repeat Simple_repeat 3 25 0 29 70 0 0 chr1 104534839 104534896 -138129457 + GC_rich Low_complexity Low_complexity 1 57 0 544 224 98 53 chr1 104535360 104535605 -138128748 - MER112 DNA MER1_type 0 256 1 3280 120 59 30 chr1 104536081 104536689 -138127664 - MER39B LTR ERV1 -26 627 2 182 330 23 57 chr1 104536896 104536984 -138127369 - L2 LINE L2 -219 3053 2969 1647 229 69 25 chr1 104537249 104537725 -138126628 - LTR65 LTR ERV1 -6 663 167 1995 208 114 4 chr1 104537922 104538394 -138125959 + MLT1F LTR MaLR 1 524 -18 273 370 87 21 chr1 104538419 104538797 -138125556 - L2 LINE L2 -337 2977 2575 21 0 0 0 chr1 104540123 104540144 -138124209 + AT_rich Low_complexity Low_complexity 1 21 0 1022 268 138 22 chr1 104540254 104540878 -138123475 + L1MC4a LINE L1 5272 5967 -1841 4397 147 40 42 chr1 104541044 104542323 -138122030 - L1MB5 LINE L1 0 6174 4903 21 0 0 0 chr1 104543044 104543065 -138121288 + AT_rich Low_complexity Low_complexity 1 21 0 1850 109 36 3 chr1 104543842 104544145 -138120208 - L1MA3 LINE L1 0 6305 5993 331 348 44 25 chr1 104544335 104544539 -138119814 + L2 LINE L2 2636 2843 -471 2081 117 0 36 chr1 104544600 104544907 -138119446 - AluSx SINE Alu -8 304 9 1650 198 0 18 chr1 104545153 104545481 -138118872 - MER58B DNA MER1_type -15 326 5 662 284 24 10 chr1 104545634 104545790 -138118563 + L1MC4 LINE L1 4367 4519 -1627 2187 93 4 0 chr1 104545790 104546070 -138118283 + AluSp SINE Alu 25 305 -8 662 284 24 10 chr1 104546070 104546159 -138118194 + L1MC4 LINE L1 4519 4619 -1527 234 0 0 0 chr1 104546159 104546185 -138118168 + (TTG)n Simple_repeat Simple_repeat 2 27 0 662 284 24 10 chr1 104546185 104546227 -138118126 + L1MC4 LINE L1 4619 4659 -1487 1201 257 64 45 chr1 104547000 104547740 -138116613 + L1MC4 LINE L1 4734 5073 -1073 2182 88 25 0 chr1 104547740 104548025 -138116328 + AluSp SINE Alu 9 300 -13 1201 257 64 45 chr1 104548025 104548362 -138115991 + L1MC4 LINE L1 5073 5402 -744 652 108 10 0 chr1 104548368 104548470 -138115883 - AluSg/x SINE Alu 0 309 207 3491 249 57 99 chr1 104548470 104550183 -138114170 + L1MC4 LINE L1 5817 7459 -536 3008 17 0 8 chr1 104550183 104550535 -138113818 + L1PA2 LINE L1 5807 6155 0 3491 249 57 99 chr1 104550535 104551051 -138113302 + L1MC4 LINE L1 7459 7995 0 1665 221 39 11 chr1 104551062 104551519 -138112834 + L1ME2 LINE L1 5679 6148 -16 1993 141 105 15 chr1 104552145 104552536 -138111817 - MSTC LTR MaLR -2 426 1 1987 125 17 3 chr1 104552902 104553199 -138111154 - AluSx SINE Alu -1 311 11 492 178 109 0 chr1 104553292 104553393 -138110960 - FRAM SINE Alu -27 149 38 392 279 169 37 chr1 104553707 104553842 -138110511 + MIR SINE MIR 16 165 -58 338 248 29 15 chr1 104554129 104554288 -138110065 + L1MC4 LINE L1 5972 6159 -49 1084 212 66 88 chr1 104554363 104554390 -138109963 + L1MC4a LINE L1 6156 6182 -1626 2095 121 0 29 chr1 104554390 104554703 -138109650 - AluSg SINE Alu -6 304 1 1084 212 66 88 chr1 104554703 104555132 -138109221 + L1MC4a LINE L1 6182 6589 -1219 2889 151 135 144 chr1 104555156 104555508 -138108845 + L1MD3 LINE L1 6927 7280 -715 540 240 0 0 chr1 104555508 104555633 -138108720 + MLT1F1 LTR MaLR 1 125 -442 2889 151 135 144 chr1 104555633 104556234 -138108119 + L1MD3 LINE L1 7280 7995 0 21 36 0 0 chr1 104556342 104556370 -138107983 + AT_rich Low_complexity Low_complexity 1 28 0 264 167 0 0 chr1 104556700 104556748 -138107605 + (CA)n Simple_repeat Simple_repeat 2 49 0 744 238 32 22 chr1 104557033 104557218 -138107135 - MIR SINE MIR -62 200 14 266 172 21 0 chr1 104557406 104557499 -138106854 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 186 143 0 0 chr1 104557499 104557534 -138106819 + (CA)n Simple_repeat Simple_repeat 1 35 0 296 48 0 0 chr1 104557594 104557636 -138106717 + MADE1 DNA Mariner 35 76 -4 1158 283 110 17 chr1 104557639 104558102 -138106251 + LTR33 LTR ERVL 14 519 -2 304 137 0 0 chr1 104558487 104558538 -138105815 - tRNA-Phe-TTC tRNA tRNA -25 51 1 1676 301 60 8 chr1 104558881 104559535 -138104818 + HERV16 LTR ERVL 2545 3232 -2532 2266 132 0 0 chr1 104559671 104559982 -138104371 - AluSx SINE Alu -1 311 1 204 169 0 56 chr1 104560009 104560080 -138104273 + CT-rich Low_complexity Low_complexity 3 69 0 192 294 20 20 chr1 104560081 104560132 -138104221 - L2 LINE L2 -12 3301 3251 2292 99 17 0 chr1 104560205 104560507 -138103846 - AluSc SINE Alu -2 307 1 849 295 28 14 chr1 104560852 104561137 -138103216 - MLT1I LTR MaLR -9 400 112 2256 92 3 30 chr1 104561226 104561564 -138102789 + MER51A LTR ERV1 2 330 -304 462 374 62 14 chr1 104561569 104561922 -138102431 + HERV16 LTR ERVL 1135 1504 -3492 1679 107 22 22 chr1 104562088 104562360 -138101993 - L1MB7 LINE L1 -303 5881 5610 2335 311 65 40 chr1 104562563 104563146 -138101207 + HERV16 LTR ERVL 1726 2350 -2646 2084 147 0 0 chr1 104563146 104563458 -138100895 + AluSx SINE Alu 1 312 0 2335 311 65 40 chr1 104563458 104563933 -138100420 + HERV16 LTR ERVL 2350 2811 -2185 3758 106 10 4 chr1 104563989 104564497 -138099856 - MER9 LTR ERVK 0 511 1 425 362 65 25 chr1 104564746 104565025 -138099328 + LTR16C LTR ERVL 200 489 -2 389 356 32 36 chr1 104565118 104565371 -138098982 + MLT1K LTR MaLR 173 424 -164 257 269 0 15 chr1 104565727 104565794 -138098559 + MIR SINE MIR 67 132 -130 357 179 13 26 chr1 104565795 104565873 -138098480 - LTR33A LTR ERVL 0 523 447 910 129 0 7 chr1 104566864 104567003 -138097350 - AluSg/x SINE Alu -1 311 174 231 36 0 0 chr1 104567668 104567696 -138096657 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 725 287 53 20 chr1 104569187 104569434 -138094919 - MIR SINE MIR -1 261 7 198 256 0 0 chr1 104569715 104569754 -138094599 - MIR SINE MIR -20 242 204 1892 164 52 19 chr1 104569766 104570133 -138094220 - L1MB3 LINE L1 -1 6182 5804 369 229 246 28 chr1 104570266 104570297 -138094056 - MIR SINE MIR -44 218 195 2212 123 0 3 chr1 104570297 104570607 -138093746 + AluSc SINE Alu 1 309 0 369 229 246 28 chr1 104570607 104570754 -138093599 - MIR SINE MIR -67 195 1 378 0 0 0 chr1 104570756 104570798 -138093555 + (TA)n Simple_repeat Simple_repeat 2 43 0 198 0 0 0 chr1 104570948 104570970 -138093383 + (TA)n Simple_repeat Simple_repeat 2 23 0 2271 101 0 13 chr1 104570970 104571278 -138093075 - AluSg SINE Alu -6 304 1 2414 112 154 120 chr1 104572098 104572136 -138092217 - MER4A LTR ERV1 0 664 629 2216 112 0 3 chr1 104572136 104572432 -138091921 - AluSx SINE Alu -17 295 1 2414 112 154 120 chr1 104572432 104573035 -138091318 - MER4A LTR ERV1 -35 629 1 2221 131 0 0 chr1 104573239 104573544 -138090809 + AluSx SINE Alu 1 305 -7 1468 225 35 64 chr1 104574130 104575115 -138089238 + L1MD2 LINE L1 2449 3346 -2800 1300 90 250 0 chr1 104575116 104575316 -138089037 + LTR12 LTR ERV1 8 257 -457 368 189 82 82 chr1 104575316 104575438 -138088915 + LTR30 LTR ERV1 553 716 -78 727 121 0 0 chr1 104575438 104575537 -138088816 + LTR12 LTR ERV1 616 714 0 35600 102 7 10 chr1 104575550 104580504 -138083849 + HERV9 LTR ERV1 40 4978 -3421 601 140 31 52 chr1 104580491 104580684 -138083669 + Harlequin LTR ERV1 953 1141 -5755 * 6616 101 3 0 chr1 104580682 104581576 -138082777 + Harlequin LTR ERV1 7503 8399 0 1389 104 29 138 chr1 104581576 104581944 -138082409 + LTR12 LTR ERV1 1 2032 -406 269 226 75 0 chr1 104581945 104582038 -138082315 + LTR30 LTR ERV1 553 652 -70 657 153 0 0 chr1 104582038 104582136 -138082217 + LTR12 LTR ERV1 617 714 0 3992 239 34 8 chr1 104582192 104583313 -138081040 + L1MD2 LINE L1 3373 4522 -1624 39133 84 7 8 chr1 104583486 104589635 -138074718 + L1PA6 LINE L1 11 6154 0 5702 186 53 16 chr1 104589622 104589843 -138074510 + L1MD2 LINE L1 4478 4689 -1670 * 2098 126 0 3 chr1 104589843 104590154 -138074199 + AluSg SINE Alu 1 310 0 5702 186 53 16 chr1 104590154 104590397 -138073956 + L1MD2 LINE L1 4689 4922 -1437 378 0 0 0 chr1 104590397 104590439 -138073914 + (CA)n Simple_repeat Simple_repeat 2 43 0 5702 186 53 16 chr1 104590439 104591790 -138072563 + L1MD2 LINE L1 4922 6357 -2 30 27 0 0 chr1 104591912 104591949 -138072404 + AT_rich Low_complexity Low_complexity 1 37 0 384 227 0 0 chr1 104591955 104592021 -138072332 - Tigger3(Golem) DNA MER2_type -2954 75 10 2465 96 37 40 chr1 104592021 104592345 -138072008 + THE1C LTR MaLR 1 325 -50 2399 100 0 0 chr1 104592345 104592655 -138071698 + AluSx SINE Alu 1 310 -2 2465 96 37 40 chr1 104592655 104592706 -138071647 + THE1C LTR MaLR 325 375 0 2148 131 77 6 chr1 104593054 104593404 -138070949 + THE1C LTR MaLR 1 375 0 337 280 136 8 chr1 104593493 104593618 -138070735 - MIR SINE MIR -116 146 6 419 209 78 31 chr1 104594042 104594171 -138070182 + L1MC2 LINE L1 6210 6344 0 414 306 27 7 chr1 104594495 104594642 -138069711 + MIR SINE MIR 28 177 -85 1100 239 35 67 chr1 104594659 104595035 -138069318 - L1ME3A LINE L1 -68 6102 5739 22 0 0 0 chr1 104595173 104595195 -138069158 + AT_rich Low_complexity Low_complexity 1 22 0 497 189 154 94 chr1 104595572 104595805 -138068548 - MER112 DNA MER1_type -1 259 13 898 122 0 24 chr1 104596370 104596534 -138067819 + (TCTA)n Simple_repeat Simple_repeat 1 160 0 210 147 0 0 chr1 104596616 104596650 -138067703 + L2 LINE L2 3280 3313 0 291 257 139 10 chr1 104596686 104596787 -138067566 + L2 LINE L2 3199 3312 -1 1129 217 78 42 chr1 104596853 104597185 -138067168 + MER2 DNA MER2_type 1 344 0 34 24 0 0 chr1 104597455 104597496 -138066857 + AT_rich Low_complexity Low_complexity 1 41 0 206 262 33 0 chr1 104598454 104598515 -138065838 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 676 278 81 5 chr1 104599026 104599249 -138065104 + MIR SINE MIR 13 252 -10 296 209 232 36 chr1 104599379 104599521 -138064832 - MLT1L LTR MaLR -169 446 333 1770 141 0 4 chr1 104599521 104599777 -138064576 + AluJb SINE Alu 6 260 -52 296 209 232 36 chr1 104599777 104599900 -138064453 - MLT1L LTR MaLR -282 333 101 808 207 0 20 chr1 104600133 104600283 -138064070 + FRAM SINE Alu 11 157 -19 1419 225 37 52 chr1 104600456 104600737 -138063616 - LTR40b LTR ERVL 0 462 223 1998 131 7 0 chr1 104600737 104601047 -138063306 + AluSq SINE Alu 1 312 0 1419 225 37 52 chr1 104601047 104601147 -138063206 - LTR40b LTR ERVL -239 223 123 1214 215 41 0 chr1 104601148 104601394 -138062959 - HERVL40 LTR ERVL -28 5502 5247 573 335 32 7 chr1 104601334 104601612 -138062741 - MER89-int LTR ERV1 -297 6504 6220 * 511 295 49 49 chr1 104601887 104602131 -138062222 - HERVL40 LTR ERVL -333 2704 2461 254 149 0 149 chr1 104602195 104602269 -138062084 - HERVL40 LTR ERVL -602 2435 2373 1720 205 30 35 chr1 104602617 104603139 -138061214 - HERVL40 LTR ERVL -1089 4441 3876 979 281 33 13 chr1 104603137 104603443 -138060910 - HERVL40 LTR ERVL -4327 1203 892 * 619 236 37 6 chr1 104603447 104603608 -138060745 - HERVL40 LTR ERVL -5318 212 47 2002 211 56 20 chr1 104603643 104604089 -138060264 - LTR40b LTR ERVL 0 462 1 238 294 0 49 chr1 104604273 104604375 -138059978 - LTR67 LTR ERVL -2 555 459 287 317 30 20 chr1 104604501 104604602 -138059751 - LTR67 LTR ERVL -341 216 115 1354 101 0 35 chr1 104604947 104604969 -138059384 + L1PA15 LINE L1 5463 5484 -681 2361 94 3 0 chr1 104604969 104605266 -138059087 + AluSp SINE Alu 1 298 -15 1354 101 0 35 chr1 104605266 104605442 -138058911 + L1PA15 LINE L1 5484 5654 -511 2260 154 56 18 chr1 104605452 104605848 -138058505 - MSTA LTR MaLR -10 418 8 3461 126 13 13 chr1 104605849 104606372 -138057981 + L1PA15 LINE L1 5643 6165 0 2179 103 3 7 chr1 104607097 104607389 -138056964 - AluSg SINE Alu -19 291 1 199 167 30 0 chr1 104607452 104607518 -138056835 + (TTATA)n Simple_repeat Simple_repeat 2 69 0 1303 238 60 12 chr1 104607913 104608245 -138056108 + L1ME1 LINE L1 5721 6068 -98 978 162 47 31 chr1 104608247 104608438 -138055915 - L1MB4 LINE L1 -1 6179 5986 449 34 17 0 chr1 104608788 104608847 -138055506 + (CA)n Simple_repeat Simple_repeat 2 61 0 329 75 19 0 chr1 104608901 104608954 -138055399 + (CA)n Simple_repeat Simple_repeat 2 55 0 2267 112 3 0 chr1 104609445 104609750 -138054603 + AluSx SINE Alu 1 306 -6 930 302 91 16 chr1 104611056 104611507 -138052846 - LTR33 LTR ERVL -35 486 2 690 304 109 0 chr1 104611597 104611817 -138052536 + MIR SINE MIR 19 262 0 428 277 124 49 chr1 104611824 104612091 -138052262 + L1ME LINE L1 5460 5746 -375 997 215 5 24 chr1 104612119 104612328 -138052025 - MLT1F1 LTR MaLR 0 567 363 321 291 17 17 chr1 104612767 104612884 -138051469 - L3 LINE CR1 -324 1253 1137 275 298 110 70 chr1 104613014 104613390 -138050963 - MLT1K LTR MaLR 0 615 200 436 299 208 13 chr1 104613593 104613978 -138050375 - L2 LINE L2 -3 3310 2851 186 328 16 0 chr1 104614567 104614631 -138049722 + L2 LINE L2 2910 2974 -298 40 37 0 0 chr1 104614726 104614780 -138049573 + AT_rich Low_complexity Low_complexity 1 54 0 1033 152 42 21 chr1 104615477 104615668 -138048685 + MER20 DNA MER1_type 25 219 0 2434 104 0 0 chr1 104615770 104616079 -138048274 - AluSc SINE Alu 0 309 1 4092 131 22 14 chr1 104616353 104617001 -138047352 + MER39B LTR ERV1 1 653 0 325 276 154 13 chr1 104617031 104617187 -138047166 + MIR SINE MIR 61 238 -24 1711 100 56 16 chr1 104617303 104617554 -138046799 - AluSg SINE Alu -10 300 40 21 0 0 0 chr1 104618138 104618159 -138046194 + AT_rich Low_complexity Low_complexity 1 21 0 528 245 34 7 chr1 104618895 104619042 -138045311 - MIR SINE MIR -68 194 44 2350 85 7 0 chr1 104619730 104620024 -138044329 - AluSx SINE Alu -16 296 1 184 324 14 78 chr1 104620070 104620212 -138044141 - L3 LINE CR1 -2 1575 1443 2124 114 26 23 chr1 104621232 104621365 -138042988 - L1PA13 LINE L1 0 6163 6032 2451 85 0 0 chr1 104621365 104621660 -138042693 - AluSc SINE Alu -14 295 1 2124 114 26 23 chr1 104621660 104621877 -138042476 - L1PA13 LINE L1 -131 6032 5812 1855 155 3 10 chr1 104621888 104622179 -138042174 - AluSx SINE Alu -6 306 18 183 114 0 0 chr1 104622695 104622730 -138041623 + (T)n Simple_repeat Simple_repeat 1 35 0 1667 194 0 3 chr1 104622893 104623181 -138041172 + AluJb SINE Alu 1 287 -25 427 264 132 11 chr1 104624007 104624117 -138040236 - MIR SINE MIR -46 216 121 189 0 0 0 chr1 104624117 104624138 -138040215 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 427 264 132 11 chr1 104624138 104624201 -138040152 - MIR SINE MIR -141 121 22 24 32 0 0 chr1 104625175 104625206 -138039147 + AT_rich Low_complexity Low_complexity 1 31 0 718 48 19 10 chr1 104628662 104628765 -138035588 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 1787 199 0 3 chr1 104628773 104629085 -138035268 - AluJo SINE Alu -1 311 1 1365 219 74 44 chr1 104629693 104630164 -138034189 - MER39 LTR ERV1 0 682 6 192 319 123 10 chr1 104630772 104630976 -138033377 - L2 LINE L2 -213 3059 2833 456 265 101 70 chr1 104630994 104631292 -138033061 + L2 LINE L2 2967 3273 -40 269 192 0 0 chr1 104631973 104632025 -138032328 - L2 LINE L2 0 3313 3262 2063 98 4 0 chr1 104632444 104632710 -138031643 - AluSp SINE Alu -6 307 41 2317 113 0 0 chr1 104633213 104633522 -138030831 - AluSx SINE Alu -3 309 1 1102 173 33 14 chr1 104633541 104633755 -138030598 + L1MC1 LINE L1 6116 6333 0 263 218 287 23 chr1 104633805 104633892 -138030461 - MER69A DNA AcHobo -66 111 2 1736 204 0 0 chr1 104634971 104635270 -138029083 - AluJo SINE Alu -13 299 1 346 172 58 0 chr1 104635403 104635490 -138028863 + MIR SINE MIR 116 207 -55 381 250 0 0 chr1 104635523 104635599 -138028754 - MER69 DNA AcHobo 0 2526 2451 * 630 214 0 78 chr1 104635598 104635752 -138028601 - MER69 DNA AcHobo -1084 142 1 273 167 0 0 chr1 104635788 104635836 -138028517 - L2 LINE L2 0 3313 3266 1194 157 16 41 chr1 104636082 104636200 -138028153 - L1MB3 LINE L1 -10 6173 6063 1631 162 19 55 chr1 104636200 104636508 -138027845 - AluJo SINE Alu -15 297 1 1194 157 16 41 chr1 104636508 104636631 -138027722 - L1MB3 LINE L1 -120 6063 5938 1558 138 4 15 chr1 104636684 104636944 -138027409 - L1MB3 LINE L1 -241 5942 5686 446 265 0 52 chr1 104637119 104637255 -138027098 + MIR3 SINE MIR 30 158 -50 390 194 0 0 chr1 104637302 104637364 -138026989 - MER81 DNA DNA -52 62 1 1676 175 42 0 chr1 104637999 104638285 -138026068 + AluJb SINE Alu 1 298 -14 1950 156 0 0 chr1 104638535 104638845 -138025508 - AluSx SINE Alu 0 310 1 273 292 32 11 chr1 104639006 104639111 -138025242 - MIR SINE MIR -60 148 40 689 276 94 46 chr1 104639654 104639761 -138024592 - L2 LINE L2 -27 3286 3186 5761 55 10 0 chr1 104639761 104640464 -138023889 - L1PA6 LINE L1 0 6154 5445 689 276 94 46 chr1 104640464 104640707 -138023646 - L2 LINE L2 -127 3186 2919 2007 248 79 108 chr1 104640712 104641165 -138023188 - L2 LINE L2 -833 2481 2016 2180 125 0 3 chr1 104641165 104641460 -138022893 + AluSx SINE Alu 5 298 -14 271 226 0 0 chr1 104641466 104641528 -138022825 + L1MC1 LINE L1 6259 6320 -13 2007 248 79 108 chr1 104641528 104642302 -138022051 - L2 LINE L2 -1303 2011 1224 201 74 0 0 chr1 104642505 104642532 -138021821 + (GA)n Simple_repeat Simple_repeat 2 28 0 400 301 124 5 chr1 104643134 104643320 -138021033 - L2 LINE L2 -2223 1091 884 391 355 60 31 chr1 104643318 104643732 -138020621 - L3 LINE CR1 -303 1274 849 * 361 296 44 6 chr1 104644196 104644355 -138019998 + L2 LINE L2 1611 1775 -1539 494 252 21 15 chr1 104644550 104644702 -138019651 + MIR SINE MIR 40 192 -65 290 285 105 41 chr1 104646047 104646486 -138017867 - L1M4 LINE L1 -1090 5056 4590 245 314 159 8 chr1 104646529 104646793 -138017560 - L2 LINE L2 -1950 1364 1061 194 304 88 33 chr1 104648146 104648327 -138016026 + L2 LINE L2 2464 2654 -660 207 288 0 0 chr1 104649392 104649451 -138014902 - L2 LINE L2 -217 3055 2997 1674 160 4 18 chr1 104649452 104649733 -138014620 + AluJb SINE Alu 1 277 -35 418 292 88 5 chr1 104650031 104650223 -138014130 + MIR SINE MIR 6 213 -49 219 276 11 35 chr1 104650195 104650282 -138014071 - MIR SINE MIR 0 262 178 * 2425 113 3 3 chr1 104650297 104650660 -138013693 - L1MB3 LINE L1 -7 6176 5814 289 156 10 0 chr1 104651921 104651988 -138012365 - L1MB3 LINE L1 -353 5830 5766 282 280 50 20 chr1 104651988 104652088 -138012265 - MIR SINE MIR -130 132 30 468 251 70 41 chr1 104652467 104652638 -138011715 + MLT1K LTR MaLR 413 588 0 396 336 10 10 chr1 104653118 104653222 -138011131 - L2 LINE L2 -35 3237 3134 207 359 19 0 chr1 104653636 104653739 -138010614 - L2 LINE L2 0 3272 3168 327 311 143 60 chr1 104655880 104656334 -138008019 - MLT1K LTR MaLR -63 525 34 284 306 31 0 chr1 104656370 104656468 -138007885 + MIR SINE MIR 161 261 -1 237 208 144 80 chr1 104656544 104656669 -138007684 + MARNA DNA Mariner 17 149 -437 838 270 28 39 chr1 104657101 104657292 -138007061 + LTR33 LTR ERVL 4 193 -328 3327 136 32 9 chr1 104657292 104657829 -138006524 - MER44D DNA MER2_type 0 605 2 838 270 28 39 chr1 104657829 104657922 -138006431 + LTR33 LTR ERVL 193 285 -236 337 330 113 12 chr1 104658430 104658776 -138005577 + L2 LINE L2 952 1332 -1982 404 340 47 25 chr1 104658783 104659101 -138005252 + L2 LINE L2 1782 2106 -1208 1224 183 118 19 chr1 104659257 104659519 -138004834 + AluJo SINE Alu 1 288 -24 291 286 0 13 chr1 104659519 104659596 -138004757 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 2337 203 27 13 chr1 104659718 104660153 -138004200 + MER21B LTR ERV1 1 441 -422 432 145 0 0 chr1 104660153 104660222 -138004131 - THE1C LTR MaLR 0 428 360 15672 90 21 8 chr1 104660231 104662553 -138001800 + L1PA6 LINE L1 11 2302 -3862 275 49 24 0 chr1 104662553 104662594 -138001759 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 15672 90 21 8 chr1 104662594 104666349 -137998004 + L1PA6 LINE L1 2302 6164 0 1520 113 103 34 chr1 104666349 104666641 -137997712 - THE1C LTR MaLR -63 312 1 * 1579 127 38 91 chr1 104666641 104666985 -137997368 + MER21A LTR ERV1 537 925 -6 2068 147 0 0 chr1 104667162 104667455 -137996898 - AluJb SINE Alu -17 295 3 1410 225 92 12 chr1 104667489 104667835 -137996518 + MLT1A2 LTR MaLR 1 374 0 2309 97 0 0 chr1 104667940 104668229 -137996124 - AluSc SINE Alu -1 308 20 576 336 30 68 chr1 104668240 104668576 -137995777 + L2 LINE L2 2948 3270 -2 486 248 38 15 chr1 104668815 104668948 -137995405 + L3 LINE CR1 960 1095 -482 230 178 0 0 chr1 104668953 104668998 -137995355 - L2 LINE L2 0 3313 3269 1315 257 41 18 chr1 104669063 104669390 -137994963 - MLT1I LTR MaLR 0 409 86 209 303 155 21 chr1 104669422 104669564 -137994789 + MIR SINE MIR 99 259 -3 21 0 0 0 chr1 104670352 104670373 -137993980 + AT_rich Low_complexity Low_complexity 1 21 0 1625 164 42 0 chr1 104671278 104671579 -137992774 + AluJb SINE Alu 12 323 0 381 269 15 69 chr1 104671598 104671728 -137992625 + MER5A DNA MER1_type 17 139 -50 212 216 98 0 chr1 104673184 104673235 -137991118 - L2 LINE L2 0 3313 3258 25 0 0 0 chr1 104673359 104673384 -137990969 + AT_rich Low_complexity Low_complexity 1 25 0 195 325 65 39 chr1 104673388 104673542 -137990811 + L2 LINE L2 3107 3264 -8 330 138 15 0 chr1 104673706 104673771 -137990582 + L1MB4 LINE L1 6100 6165 -15 360 287 39 39 chr1 104674423 104674552 -137989801 - L2 LINE L2 -211 3061 2933 254 370 0 0 chr1 104675284 104675376 -137988977 + MIR SINE MIR 50 141 -67 23 0 0 0 chr1 104675500 104675523 -137988830 + AT_rich Low_complexity Low_complexity 1 23 0 1557 205 10 20 chr1 104675523 104675821 -137988532 - AluJo SINE Alu -17 295 1 21 0 0 0 chr1 104676353 104676374 -137987979 + AT_rich Low_complexity Low_complexity 1 21 0 2281 105 0 43 chr1 104677045 104677370 -137986983 - AluJo SINE Alu -1 311 1 1898 156 3 3 chr1 104677584 104677879 -137986474 - AluSx SINE Alu -17 295 1 954 192 34 43 chr1 104679505 104679713 -137984640 + MER58A DNA MER1_type 19 224 0 450 299 92 17 chr1 104679730 104679904 -137984449 + MIR SINE MIR 76 262 0 1297 312 13 35 chr1 104680984 104681445 -137982908 - LTR16B LTR ERVL -13 451 1 472 315 48 72 chr1 104681461 104682149 -137982204 - HERV16 LTR ERVL -17 5287 4555 307 269 13 0 chr1 104682206 104682284 -137982069 - ERVL LTR ERVL -1073 4691 4613 1810 274 53 29 chr1 104682415 104682966 -137981387 + MLT1E LTR MaLR 30 593 0 1068 326 48 19 chr1 104682979 104683495 -137980858 - ERVL LTR ERVL -1907 3857 3327 1166 289 70 16 chr1 104683497 104683871 -137980482 - ERVL LTR ERVL -2006 2990 2597 269 372 0 25 chr1 104683882 104684003 -137980350 - ERVL LTR ERVL -2846 2150 2033 631 255 47 0 chr1 104684020 104684169 -137980184 + L2 LINE L2 3154 3309 -4 238 200 67 0 chr1 104684175 104684235 -137980118 - L1ME LINE L1 -685 5436 5373 29 47 0 0 chr1 104684260 104684303 -137980050 + AT_rich Low_complexity Low_complexity 1 43 0 284 320 78 20 chr1 104684487 104684640 -137979713 + L2 LINE L2 3108 3269 -3 184 167 42 0 chr1 104684893 104684941 -137979412 + (TA)n Simple_repeat Simple_repeat 1 50 0 205 93 0 47 chr1 104685022 104685065 -137979288 + (TA)n Simple_repeat Simple_repeat 2 42 0 483 155 179 0 chr1 104685068 104685152 -137979201 + FRAM SINE Alu 63 161 -15 406 223 122 91 chr1 104685217 104685414 -137978939 - L2 LINE L2 -7 3306 3104 244 398 0 8 chr1 104685504 104685632 -137978721 - L2 LINE L2 -223 3090 2964 508 304 14 20 chr1 104686074 104686222 -137978131 - MIR SINE MIR -115 147 1 586 223 50 36 chr1 104686814 104686953 -137977400 + MIR3 SINE MIR 3 143 -65 969 271 115 54 chr1 104689702 104690259 -137974094 + L1ME4a LINE L1 5527 6117 -4 6624 91 11 4 chr1 104690450 104692376 -137971977 - L1PA13 LINE L1 0 6163 4215 1512 209 126 19 chr1 104694051 104694473 -137969880 - MLT1C LTR MaLR 0 467 1 668 260 78 18 chr1 104694947 104695166 -137969187 + MIR SINE MIR 10 241 -21 475 274 59 65 chr1 104695388 104695574 -137968779 + Charlie8 DNA MER1_type 4 188 -2229 397 299 26 0 chr1 104695583 104695700 -137968653 + MER94 DNA DNA 10 129 -5 1722 206 3 6 chr1 104696120 104696431 -137967922 - AluJo SINE Alu -2 310 1 2210 120 0 0 chr1 104696435 104696735 -137967618 - AluSc SINE Alu -9 300 1 2703 39 0 3 chr1 104696999 104697310 -137967043 + AluY SINE Alu 1 310 -1 354 349 13 18 chr1 104697663 104697860 -137966493 + MIR SINE MIR 18 212 -50 2333 127 22 50 chr1 104698409 104698810 -137965543 - MLT1B LTR MaLR 0 390 1 294 29 0 0 chr1 104700177 104700212 -137964141 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 2130 113 3 0 chr1 104700579 104700871 -137963482 + AluY SINE Alu 4 296 -15 210 273 15 15 chr1 104700871 104700931 -137963422 + L3 LINE CR1 1518 1577 0 484 256 98 12 chr1 104701378 104701542 -137962811 - HERVL LTR ERVL -637 5017 4840 935 278 30 67 chr1 104701834 104702266 -137962087 - L2 LINE L2 -42 3271 2856 364 211 21 99 chr1 104702354 104702406 -137961947 + MIR SINE MIR 100 154 -108 1848 90 116 4 chr1 104702406 104702673 -137961680 + AluYa8 SINE Alu 1 297 -13 364 211 21 99 chr1 104702673 104702762 -137961591 + MIR SINE MIR 154 230 -32 374 266 0 0 chr1 104703484 104703563 -137960790 + L2 LINE L2 3234 3312 -1 2329 96 3 3 chr1 104704071 104704374 -137959979 - AluSp SINE Alu -8 305 3 1712 148 3 38 chr1 104704833 104705123 -137959230 + AluJo SINE Alu 3 282 -30 216 0 0 0 chr1 104705128 104705152 -137959201 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr1 104705383 104705404 -137958949 + AT_rich Low_complexity Low_complexity 1 21 0 248 220 0 0 chr1 104705556 104705606 -137958747 - L2 LINE L2 -3 3269 3220 331 274 129 84 chr1 104706010 104706103 -137958250 - L1M2 LINE L1 -6003 846 759 189 0 0 0 chr1 104706103 104706124 -137958229 + (TGG)n Simple_repeat Simple_repeat 3 23 0 331 274 129 84 chr1 104706124 104706409 -137957944 - L1M2 LINE L1 -6090 759 451 266 147 232 74 chr1 104707425 104707520 -137956833 - MER69 DNA AcHobo -33 2493 2384 296 226 0 0 chr1 104707613 104707666 -137956687 - MER69 DNA AcHobo -2461 65 13 2392 211 67 13 chr1 104708308 104709051 -137955302 - L1ME1 LINE L1 -229 6006 5221 * 6677 224 100 16 chr1 104709040 104711469 -137952884 - L1ME1 LINE L1 -1773 4442 1836 756 292 91 53 chr1 104711578 104712071 -137952282 - L1ME1 LINE L1 -5831 565 54 453 93 34 17 chr1 104712076 104712194 -137952159 + (TA)n Simple_repeat Simple_repeat 1 120 0 2373 76 0 3 chr1 104712203 104712493 -137951860 - AluSq SINE Alu -24 289 1 593 247 63 5 chr1 104712497 104712687 -137951666 - L1MC5 LINE L1 -430 7531 7331 1111 128 17 17 chr1 104712688 104712868 -137951485 - MER20 DNA MER1_type 0 219 40 186 150 33 17 chr1 104714225 104714285 -137950068 + CT-rich Low_complexity Low_complexity 4 64 0 21 0 0 0 chr1 104714489 104714510 -137949843 + AT_rich Low_complexity Low_complexity 1 21 0 219 327 0 19 chr1 104715055 104715159 -137949194 + CT-rich Low_complexity Low_complexity 1 102 0 2100 115 6 26 chr1 104715460 104715773 -137948580 + AluSx SINE Alu 3 309 -3 606 289 104 78 chr1 104716024 104716704 -137947649 - L1M2 LINE L1 -5457 1392 511 542 241 135 14 chr1 104716711 104716918 -137947435 - MIR SINE MIR -21 241 10 25 0 0 0 chr1 104717125 104717150 -137947203 + AT_rich Low_complexity Low_complexity 1 25 0 190 226 0 57 chr1 104718382 104718435 -137945918 - MIR SINE MIR -26 236 187 21 0 0 0 chr1 104719442 104719463 -137944890 + AT_rich Low_complexity Low_complexity 1 21 0 273 299 80 123 chr1 104719574 104719898 -137944455 - L2 LINE L2 -37 3235 2926 444 200 21 11 chr1 104719909 104720004 -137944349 - MER112 DNA MER1_type -8 252 157 599 317 161 10 chr1 104720128 104720519 -137943834 - L2 LINE L2 -405 2909 2460 1552 162 12 79 chr1 104720575 104720903 -137943450 + AluJo SINE Alu 1 306 -6 227 281 18 0 chr1 104721213 104721270 -137943083 - MIR SINE MIR -156 106 49 221 154 26 0 chr1 104721444 104721483 -137942870 + (TG)n Simple_repeat Simple_repeat 1 40 0 400 279 128 50 chr1 104721519 104721698 -137942655 - MIR SINE MIR -44 218 26 418 277 96 37 chr1 104721816 104722004 -137942349 + MIR SINE MIR 13 211 -51 21 0 0 0 chr1 104722040 104722061 -137942292 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 104723669 104723699 -137940654 + AT_rich Low_complexity Low_complexity 1 30 0 229 333 56 19 chr1 104725290 104725398 -137938955 + MIR3 SINE MIR 2 113 -95 820 226 93 29 chr1 104727289 104727493 -137936860 + MIR SINE MIR 2 218 -44 319 312 47 45 chr1 104728370 104728627 -137935726 - MIR SINE MIR -3 259 8 524 121 169 24 chr1 104729154 104729278 -137935075 - Charlie1 DNA MER1_type -22 2739 2598 2067 123 7 10 chr1 104729719 104730019 -137934334 + AluSx SINE Alu 1 299 -13 255 152 0 0 chr1 104730186 104730232 -137934121 + (TA)n Simple_repeat Simple_repeat 1 46 0 1087 225 64 0 chr1 104730292 104730528 -137933825 - MIR SINE MIR -10 252 2 2439 48 0 3 chr1 104730584 104730879 -137933474 + AluY SINE Alu 1 294 -17 4928 183 66 41 chr1 104730946 104732093 -137932260 - L1MC3 LINE L1 -1 7784 6609 304 277 21 0 chr1 104732138 104732232 -137932121 + L1MC4 LINE L1 6611 6706 -1336 349 273 9 0 chr1 104732232 104732342 -137932011 + (TA)n Simple_repeat Simple_repeat 1 111 0 281 247 52 13 chr1 104732387 104732464 -137931889 + MIR SINE MIR 183 262 0 458 264 61 33 chr1 104732746 104732958 -137931395 - MER102b DNA MER1_type -38 303 86 231 226 0 0 chr1 104732982 104733035 -137931318 + L1ME2 LINE L1 6111 6163 -1 21 36 0 0 chr1 104733406 104733434 -137930919 + AT_rich Low_complexity Low_complexity 1 28 0 1578 183 3 42 chr1 104735954 104736266 -137928087 - AluJo SINE Alu -7 305 6 2059 126 14 0 chr1 104736283 104736576 -137927777 - AluSx SINE Alu -15 297 1 929 263 194 43 chr1 104737361 104737993 -137926360 - L1MC3 LINE L1 -474 5647 5269 268 297 169 12 chr1 104738257 104738494 -137925859 - L1MC3 LINE L1 -1254 4892 4694 183 42 0 0 chr1 104738494 104738518 -137925835 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 268 297 169 12 chr1 104738518 104738707 -137925646 - L1MC3 LINE L1 -1452 4694 4399 617 217 94 57 chr1 104738760 104739004 -137925349 - MER112 DNA MER1_type -7 253 1 209 306 56 66 chr1 104739162 104739358 -137924995 - L2 LINE L2 -652 2662 2469 329 281 245 20 chr1 104739577 104739773 -137924580 - MIR SINE MIR -22 240 1 * 334 148 136 45 chr1 104739773 104739855 -137924498 - MIR SINE MIR -111 151 62 743 236 183 0 chr1 104739957 104740165 -137924188 - MIR SINE MIR 0 262 17 595 185 38 2 chr1 104740165 104740345 -137924008 + MER58A DNA MER1_type 1 216 -8 2370 53 0 10 chr1 104740346 104740650 -137923703 + AluY SINE Alu 1 301 -10 304 206 165 10 chr1 104741381 104741478 -137922875 - L1MA10 LINE L1 0 6334 6223 1813 190 52 90 chr1 104741507 104741555 -137922798 - L1MEc LINE L1 -3174 3041 2993 1582 89 101 28 chr1 104741555 104741802 -137922551 - AluSx SINE Alu -18 294 30 1813 190 52 90 chr1 104741802 104741866 -137922487 - L1MEc LINE L1 -3222 2993 2928 1529 69 5 0 chr1 104741866 104742070 -137922283 + L1PA4 LINE L1 5948 6152 -3 1813 190 52 90 chr1 104742070 104742514 -137921839 - L1MEc LINE L1 -3287 2928 2508 2167 122 0 6 chr1 104742514 104742825 -137921528 - AluSx SINE Alu -3 309 1 1813 190 52 90 chr1 104742825 104742897 -137921456 - L1MEc LINE L1 -3707 2508 2435 836 189 22 39 chr1 104742907 104743087 -137921266 - AluJo SINE Alu -14 298 122 319 185 98 22 chr1 104743098 104743190 -137921163 - L1MEc LINE L1 -6293 103 5 504 233 64 52 chr1 104743375 104743547 -137920806 + MER5B DNA MER1_type 4 177 -1 195 42 0 0 chr1 104743998 104744022 -137920331 + (TATATG)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr1 104744825 104744847 -137919506 + AT_rich Low_complexity Low_complexity 1 22 0 2339 93 0 0 chr1 104745068 104745368 -137918985 + AluSx SINE Alu 1 300 -12 701 208 0 8 chr1 104745564 104745689 -137918664 + AluJb SINE Alu 3 126 -186 1396 192 60 26 chr1 104745690 104745992 -137918361 + AluJo SINE Alu 1 312 0 23 0 0 0 chr1 104746052 104746075 -137918278 + AT_rich Low_complexity Low_complexity 1 23 0 1923 136 4 0 chr1 104746524 104746826 -137917527 + AluSx SINE Alu 5 307 0 256 165 51 13 chr1 104746848 104746927 -137917426 + (TA)n Simple_repeat Simple_repeat 1 82 0 1642 164 21 14 chr1 104746927 104747213 -137917140 - AluSx SINE Alu -24 288 1 423 250 136 28 chr1 104747231 104747407 -137916946 - MIR SINE MIR -21 241 47 874 177 20 35 chr1 104747513 104747711 -137916642 - MER3 DNA MER1_type -2 207 13 307 333 92 0 chr1 104748927 104749047 -137915306 - L2 LINE L2 -21 3251 3121 326 268 132 82 chr1 104749115 104749358 -137914995 - MIR SINE MIR -2 260 6 242 301 144 62 chr1 104749375 104749521 -137914832 + MER5B DNA MER1_type 21 178 0 643 136 0 143 chr1 104749529 104749683 -137914670 + FLAM_A SINE Alu 1 132 -1 1785 152 10 10 chr1 104750078 104750375 -137913978 - AluJb SINE Alu -15 297 1 574 211 160 13 chr1 104751347 104751503 -137912850 - MER5A DNA MER1_type -9 180 2 587 121 0 0 chr1 104752155 104752238 -137912115 + AluJ/FLAM SINE Alu 1 83 -229 413 187 0 11 chr1 104752291 104752382 -137911971 + GA-rich Low_complexity Low_complexity 3 92 0 2974 222 69 13 chr1 104752811 104753895 -137910458 - L1ME1 LINE L1 -39 6521 5324 1878 247 46 6 chr1 104753952 104754430 -137909923 - MER74B LTR ERVL -67 555 59 6830 211 62 83 chr1 104754433 104754580 -137909773 - L1ME1 LINE L1 -1212 5328 5179 1929 78 7 7 chr1 104754580 104754849 -137909504 - L1PA6 LINE L1 -4 6150 5882 6830 211 62 83 chr1 104754849 104755334 -137909019 - L1ME1 LINE L1 -1361 5179 4685 1800 153 23 7 chr1 104755334 104755634 -137908719 - AluJo SINE Alu -7 305 1 6830 211 62 83 chr1 104755634 104757267 -137907086 - L1ME1 LINE L1 -1855 4685 3143 2784 13 0 0 chr1 104757267 104757577 -137906776 + AluY SINE Alu 1 310 -1 6830 211 62 83 chr1 104757577 104758357 -137905996 - L1ME1 LINE L1 -3397 3143 2348 1071 156 204 48 chr1 104759089 104759403 -137904950 + MLT1A1 LTR MaLR 1 363 -2 2706 254 79 27 chr1 104759703 104760987 -137903366 - L1ME1 LINE L1 -4184 2356 1006 21 36 0 0 chr1 104761710 104761738 -137902615 + AT_rich Low_complexity Low_complexity 1 28 0 229 240 20 0 chr1 104761764 104761814 -137902539 - L3 LINE CR1 -3 1574 1524 446 299 69 0 chr1 104761843 104761987 -137902366 - MIR SINE MIR 0 262 109 387 308 158 14 chr1 104761989 104762135 -137902218 + MER5A DNA MER1_type 7 173 -16 461 332 98 44 chr1 104762529 104763096 -137901257 + L2 LINE L2 2653 3259 -54 248 282 14 0 chr1 104763095 104763166 -137901187 + MIR SINE MIR 170 241 -21 * 325 304 48 77 chr1 104765103 104765271 -137899082 - L1ME3A LINE L1 -53 6117 5955 206 330 21 32 chr1 104765643 104765737 -137898616 - MIR SINE MIR -158 104 12 844 306 70 40 chr1 104766128 104766527 -137897826 + L3 LINE CR1 1150 1560 -17 195 360 54 18 chr1 104766841 104766952 -137897401 - L2 LINE L2 -5 3267 3153 21 0 0 0 chr1 104768609 104768630 -137895723 + AT_rich Low_complexity Low_complexity 1 21 0 1602 134 14 47 chr1 104769047 104769323 -137895030 - AluJb SINE Alu -6 306 40 1691 101 16 4 chr1 104770620 104770877 -137893476 - L1MA5A LINE L1 -2 6295 6036 375 23 0 0 chr1 104770972 104771016 -137893337 + (TTTTG)n Simple_repeat Simple_repeat 4 47 0 2059 264 173 37 chr1 104771039 104771746 -137892607 - HAL1 LINE L1 -817 1690 1080 1300 151 90 10 chr1 104771746 104772045 -137892308 - MER33 DNA MER1_type -1 323 1 2059 264 173 37 chr1 104772045 104772058 -137892295 - HAL1 LINE L1 -1427 1080 1070 198 0 0 0 chr1 104772058 104772080 -137892273 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2059 264 173 37 chr1 104772080 104772758 -137891595 - HAL1 LINE L1 -1437 1070 101 212 307 56 47 chr1 104772979 104773171 -137891182 - MIR SINE MIR -21 241 45 321 163 76 33 chr1 104774155 104774203 -137890150 - L1MB2 LINE L1 -2 6169 6125 2431 91 3 0 chr1 104774203 104774510 -137889843 - AluSg SINE Alu -1 309 2 321 163 76 33 chr1 104774510 104774553 -137889800 - L1MB2 LINE L1 -46 6125 6074 208 290 130 38 chr1 104774626 104774757 -137889596 - L2 LINE L2 -7 3265 3123 240 348 192 18 chr1 104774893 104775382 -137888971 - L2 LINE L2 -341 2973 2400 2220 88 14 3 chr1 104776918 104777212 -137887141 + AluSq SINE Alu 1 297 -16 297 278 99 56 chr1 104777219 104777381 -137886972 - MIR SINE MIR -6 256 88 472 309 112 4 chr1 104777465 104777698 -137886655 - MIR SINE MIR 0 262 5 2146 145 0 0 chr1 104777822 104778132 -137886221 + AluSg SINE Alu 1 310 0 180 0 0 0 chr1 104781192 104781212 -137883141 + (TA)n Simple_repeat Simple_repeat 2 21 0 642 293 35 31 chr1 104781495 104781754 -137882599 - MIR SINE MIR 0 262 3 736 99 31 99 chr1 104781802 104781964 -137882389 - L1MB3 LINE L1 -3 6180 6030 500 256 81 39 chr1 104782849 104783158 -137881195 + L1M4 LINE L1 4283 4604 -1542 3098 223 168 21 chr1 104783164 104784379 -137879974 - L1MC4 LINE L1 -181 7861 6469 2486 93 0 0 chr1 104785157 104785459 -137878894 + AluSg SINE Alu 1 302 -8 299 225 58 25 chr1 104786059 104786184 -137878169 - L1M3 LINE L1 -362 5803 5698 2105 135 3 0 chr1 104786213 104786524 -137877829 - AluSx SINE Alu 0 312 1 3011 69 57 2 chr1 104786603 104786987 -137877366 + MLT2A1 LTR ERVL 1 411 -33 240 35 0 0 chr1 104786987 104787016 -137877337 + (TG)n Simple_repeat Simple_repeat 2 30 0 3011 69 57 2 chr1 104787016 104787052 -137877301 + MLT2A1 LTR ERVL 411 444 0 4435 66 26 13 chr1 104787052 104787675 -137876678 + HERVL-A1-A1 LTR ERVL 1 631 -5023 * 15285 70 6 5 chr1 104787673 104789702 -137874651 + HERVL-A1-A1 LTR ERVL 1335 3366 -2288 13284 60 13 1 chr1 104789720 104791246 -137873107 + HERVL-A1-A1 LTR ERVL 3882 5433 -221 2314 80 0 3 chr1 104791246 104791547 -137872806 + AluY SINE Alu 1 300 -11 13284 60 13 1 chr1 104791547 104791772 -137872581 + HERVL-A1-A1 LTR ERVL 5433 5654 0 3275 63 45 2 chr1 104791772 104792198 -137872155 + MLT2A1 LTR ERVL 1 444 0 269 348 27 9 chr1 104792203 104792315 -137872038 - MIR SINE MIR -108 154 41 245 374 126 34 chr1 104792964 104793170 -137871183 + L3 LINE CR1 1337 1561 -16 399 272 51 6 chr1 104793345 104793503 -137870850 + L1MEc LINE L1 1598 1762 -4634 1311 102 34 0 chr1 104793524 104793700 -137870653 + AluSp SINE Alu 130 311 -2 1827 274 98 11 chr1 104793928 104794930 -137869423 + L1MEc LINE L1 2111 3153 -3062 899 64 0 0 chr1 104794932 104795042 -137869311 + AluSq/x SINE Alu 1 110 -203 666 259 139 13 chr1 104795052 104795527 -137868826 + L1MEc LINE L1 3230 3764 -2451 1490 259 71 39 chr1 104795535 104796337 -137868016 + L1MEc LINE L1 3835 4662 -1553 2232 86 14 0 chr1 104796546 104796873 -137867480 - AluSx SINE Alu 0 331 1 688 269 99 43 chr1 104797766 104798089 -137866264 + L3 LINE CR1 1138 1478 -99 1656 163 10 116 chr1 104798089 104798495 -137865858 - MLT1A1 LTR MaLR 0 365 3 304 314 49 0 chr1 104798790 104798892 -137865461 - L2 LINE L2 -5 3267 3161 1146 173 5 0 chr1 104799230 104799438 -137864915 - MER3 DNA MER1_type 0 209 1 2332 100 6 3 chr1 104799784 104800095 -137864258 + AluSx SINE Alu 1 312 0 188 309 105 42 chr1 104800590 104800781 -137863572 - MIR SINE MIR -25 237 35 323 302 222 5 chr1 104800831 104801043 -137863310 - MIR SINE MIR 0 262 5 2335 91 3 3 chr1 104801485 104801782 -137862571 + AluSp SINE Alu 1 297 -16 241 271 83 8 chr1 104801973 104802106 -137862247 + L1ME LINE L1 5518 5660 -461 183 80 0 0 chr1 104802191 104802216 -137862137 + (TA)n Simple_repeat Simple_repeat 2 26 0 215 200 0 0 chr1 104802236 104802271 -137862082 + (CA)n Simple_repeat Simple_repeat 2 36 0 509 186 10 10 chr1 104802292 104802394 -137861959 - U13 snRNA snRNA 0 104 3 1398 72 0 39 chr1 104802543 104802723 -137861630 + AluY SINE Alu 1 173 -138 682 175 67 0 chr1 104853961 104854081 -137810272 - FLAM_C SINE Alu -5 128 1 2118 142 0 3 chr1 104854791 104855102 -137809251 - AluSx SINE Alu -2 310 1 343 113 42 28 chr1 104855325 104855396 -137808957 - MER69 DNA AcHobo -4 2522 2451 232 71 143 0 chr1 104855393 104855435 -137808918 - MER69 DNA AcHobo -2380 146 99 * 691 191 136 10 chr1 104855490 104855689 -137808664 + MIR SINE MIR 3 226 -36 2178 122 10 0 chr1 104857305 104857601 -137806752 - AluSx SINE Alu -13 299 1 2131 139 0 3 chr1 104857692 104858002 -137806351 - AluSx SINE Alu -3 309 1 2277 101 3 7 chr1 104858875 104859183 -137805170 + AluSp SINE Alu 1 307 -6 377 293 162 6 chr1 104859367 104859534 -137804819 - MIR SINE MIR -57 205 13 195 288 55 0 chr1 104859692 104859765 -137804588 - L2 LINE L2 -1347 1967 1891 1392 91 0 6 chr1 104859829 104860005 -137804348 - AluJb SINE Alu -52 260 86 1305 152 28 14 chr1 104861112 104861329 -137803024 + AluJo SINE Alu 83 302 -10 573 274 40 73 chr1 104862559 104862913 -137801440 - L3 LINE CR1 -220 1357 1016 1981 102 44 41 chr1 104864313 104864606 -137799747 - AluSq SINE Alu -19 294 1 1720 159 51 0 chr1 104864614 104864890 -137799463 - AluJb SINE Alu -22 290 1 195 241 0 0 chr1 104865377 104865431 -137798922 - L2 LINE L2 -307 2965 2912 226 167 42 21 chr1 104866044 104866092 -137798261 + L2 LINE L2 3179 3227 -86 658 189 21 95 chr1 104866956 104867201 -137797152 - MER106B DNA MER1_type 0 236 1 1559 189 10 16 chr1 104867221 104867528 -137796825 - AluJo SINE Alu -7 305 1 27 0 0 0 chr1 104867533 104867560 -137796793 + AT_rich Low_complexity Low_complexity 1 27 0 2221 101 0 0 chr1 104867574 104867860 -137796493 + AluSx SINE Alu 25 310 -2 2419 88 0 0 chr1 104868502 104868808 -137795545 - AluY SINE Alu -1 310 5 222 249 8 21 chr1 104869309 104869388 -137794965 - MIR SINE MIR -122 86 8 2292 100 0 0 chr1 104870107 104870398 -137793955 + AluSx SINE Alu 1 291 -21 624 143 0 0 chr1 104870530 104870628 -137793725 + AluJ/FLAM SINE Alu 2 99 -213 1651 181 11 0 chr1 104871643 104871919 -137792434 - AluJo SINE Alu -30 282 4 27 49 0 0 chr1 104872017 104872058 -137792295 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr1 104874973 104875001 -137789352 + AT_rich Low_complexity Low_complexity 1 28 0 2329 114 0 0 chr1 104875011 104875318 -137789035 - AluSx SINE Alu -5 307 1 786 199 0 0 chr1 104875320 104875451 -137788902 - AluJo/FLAM SINE Alu -180 132 2 397 249 90 23 chr1 104875980 104876157 -137788196 + L1ME4a LINE L1 5922 6110 -11 192 276 114 67 chr1 104877710 104877815 -137786538 - MIR SINE MIR -62 146 37 195 42 0 0 chr1 104878697 104878721 -137785632 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr1 104879100 104879127 -137785226 + AT_rich Low_complexity Low_complexity 1 27 0 261 219 73 49 chr1 104880086 104880168 -137784185 + MER5B DNA MER1_type 94 177 -1 270 323 10 0 chr1 104880361 104880460 -137783893 - L2 LINE L2 -241 3031 2932 970 183 12 0 chr1 104880653 104880822 -137783531 + FAM SINE Alu 1 171 -4 781 174 161 11 chr1 104881329 104881596 -137782757 - LTR49 LTR ERV1 -1 594 434 963 166 99 71 chr1 104881616 104881869 -137782484 - LTR29 LTR ERV1 -360 262 3 2158 111 0 0 chr1 104881997 104882277 -137782076 - AluSx SINE Alu -30 282 3 1471 75 27 0 chr1 104882532 104882718 -137781635 + AluSp SINE Alu 109 299 -14 2294 107 0 0 chr1 104884169 104884459 -137779894 - AluSx SINE Alu -22 290 1 285 219 333 0 chr1 104884632 104884755 -137779598 + MIR SINE MIR 88 251 -11 994 144 19 0 chr1 104885238 104885398 -137778955 - AluSg/x SINE Alu -13 299 137 2393 84 3 10 chr1 104885950 104886258 -137778095 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr1 104886342 104886363 -137777990 + AT_rich Low_complexity Low_complexity 1 21 0 291 308 100 0 chr1 104886415 104886545 -137777808 - L1ME LINE L1 -371 5750 5608 270 0 0 0 chr1 104886545 104886575 -137777778 + (TG)n Simple_repeat Simple_repeat 1 30 0 2010 122 14 10 chr1 104887039 104887171 -137777182 + AluSg SINE Alu 1 131 -179 252 86 0 0 chr1 104887171 104887206 -137777147 + (TA)n Simple_repeat Simple_repeat 2 36 0 2010 122 14 10 chr1 104887206 104887369 -137776984 + AluSg SINE Alu 131 297 -13 22 0 0 0 chr1 104887797 104887819 -137776534 + AT_rich Low_complexity Low_complexity 1 22 0 845 201 29 29 chr1 104887874 104888083 -137776270 + MIR SINE MIR 8 216 -46 364 236 178 32 chr1 104890168 104890325 -137774028 - MIR SINE MIR 0 262 83 1957 107 75 0 chr1 104890763 104891043 -137773310 - AluSx SINE Alu -11 301 1 718 280 128 25 chr1 104891953 104892353 -137772000 - HAL1b LINE L1 -17 1331 891 1707 173 7 23 chr1 104892481 104892788 -137771565 - AluJb SINE Alu -10 302 1 198 344 146 0 chr1 104893077 104893228 -137771125 - MIR3 SINE MIR -15 193 21 409 270 56 34 chr1 104893756 104893934 -137770419 + MIR SINE MIR 70 251 -11 2275 76 3 45 chr1 104893964 104894278 -137770075 - AluSc SINE Alu -7 302 2 2499 68 0 0 chr1 104894288 104894584 -137769769 - AluY SINE Alu -15 296 1 646 222 0 0 chr1 104894954 104895080 -137769273 - FLAM_A SINE Alu -3 130 5 1082 185 59 23 chr1 104895092 104895376 -137768977 - L1MB2 LINE L1 0 6171 5887 3507 167 40 50 chr1 104895536 104896138 -137768215 - L1MB2 LINE L1 -248 5923 5316 2497 97 0 0 chr1 104896138 104896449 -137767904 - AluY SINE Alu 0 311 1 2490 92 0 0 chr1 104896449 104896755 -137767598 - AluSg SINE Alu -4 306 1 3507 167 40 50 chr1 104896755 104897338 -137767015 - L1MB2 LINE L1 -853 5318 4743 188 86 29 0 chr1 104897727 104897762 -137766591 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2463 42 7 3 chr1 104897765 104898054 -137766299 - AluY SINE Alu -21 290 1 218 255 153 20 chr1 104900541 104900639 -137763714 + MIR3 SINE MIR 64 174 -34 391 224 128 45 chr1 104901161 104901340 -137763013 + MIR SINE MIR 62 255 -7 223 313 131 10 chr1 104903302 104903401 -137760952 - MIR3 SINE MIR -32 176 66 2331 92 20 0 chr1 104903611 104903915 -137760438 + AluSp SINE Alu 1 310 -3 309 212 254 42 chr1 104904890 104905008 -137759345 + MIR SINE MIR 9 151 -111 2120 112 10 10 chr1 104905036 104905339 -137759014 + AluSq SINE Alu 11 313 0 201 283 167 40 chr1 104906150 104906348 -137758005 - L3b LINE CR1 -120 1463 1241 22 0 0 0 chr1 104907922 104907944 -137756409 + AT_rich Low_complexity Low_complexity 1 22 0 1368 216 27 27 chr1 104908185 104908523 -137755830 + MER58B DNA MER1_type 4 341 0 408 281 130 11 chr1 104913942 104914127 -137750226 - L3b LINE CR1 -186 1397 1191 2165 238 120 63 chr1 104914481 104916700 -137747653 - HAL1 LINE L1 -1 2506 62 2153 86 4 7 chr1 104917017 104917333 -137747020 + AluSc SINE Alu 1 315 0 250 26 0 103 chr1 104917883 104917895 -137746458 - MER41B LTR ERV1 -122 513 501 2450 80 0 3 chr1 104917895 104918197 -137746156 + AluSc SINE Alu 1 301 -8 250 26 0 103 chr1 104918197 104918223 -137746130 - MER41B LTR ERV1 -134 501 479 208 326 0 94 chr1 104918932 104918976 -137745377 - MIR SINE MIR -118 144 97 2142 134 0 3 chr1 104918976 104919281 -137745072 + AluSx SINE Alu 1 304 -8 208 326 0 94 chr1 104919281 104919374 -137744979 - MIR SINE MIR -165 97 20 369 285 30 80 chr1 104919591 104919791 -137744562 + MIR SINE MIR 44 233 -29 252 0 0 0 chr1 104921103 104921131 -137743222 + (CTGGGG)n Simple_repeat Simple_repeat 4 31 0 464 187 12 111 chr1 104921131 104921302 -137743051 - MER20 DNA MER1_type -65 154 1 224 209 0 30 chr1 104921854 104921921 -137742432 + L2 LINE L2 2162 2226 -1088 188 296 23 0 chr1 104922055 104922099 -137742254 - L2 LINE L2 -15 3257 3213 2731 268 195 18 chr1 104922197 104923916 -137740437 + L2 LINE L2 1282 3313 0 383 250 83 69 chr1 104924538 104924742 -137739611 + L2 LINE L2 3106 3312 -1 1466 166 101 11 chr1 104925969 104926246 -137738107 + AluJb SINE Alu 11 312 0 2452 64 0 3 chr1 104927763 104928060 -137736293 - AluY SINE Alu -15 296 1 227 361 80 17 chr1 104928110 104928348 -137736005 + MIR SINE MIR 4 256 -6 1068 308 90 7 chr1 104928431 104928896 -137735457 + MLT1J LTR MaLR 5 508 -3 203 182 18 36 chr1 104929351 104929406 -137734947 + MER5C DNA MER1_type 1 54 -270 355 275 22 10 chr1 104929601 104929736 -137734617 + MER5B DNA MER1_type 51 178 0 2419 88 0 0 chr1 104929843 104930140 -137734213 - AluSg SINE Alu -13 297 1 231 328 46 38 chr1 104930871 104931002 -137733351 - L2 LINE L2 -4 3268 3137 530 323 82 19 chr1 104931156 104931792 -137732561 + L2 LINE L2 1665 2433 -881 210 133 22 44 chr1 104932117 104932162 -137732191 + (CACCC)n Simple_repeat Simple_repeat 5 48 0 1942 163 41 15 chr1 104934712 104935050 -137729303 + MER7A DNA MER2_type 2 346 0 2240 138 0 0 chr1 104935417 104935764 -137728589 + AluJb SINE Alu 1 347 0 277 277 69 10 chr1 104935781 104935882 -137728471 + MIR3 SINE MIR 77 183 -25 2346 103 0 3 chr1 104936318 104936630 -137727723 + AluSx SINE Alu 1 311 -1 489 248 160 29 chr1 104936906 104937112 -137727241 + MIR SINE MIR 28 260 -2 2631 173 36 12 chr1 104938556 104939060 -137725293 - L1MA9 LINE L1 -30 6282 5767 1933 153 17 0 chr1 104939070 104939371 -137724982 - AluJb SINE Alu -4 308 3 1487 172 54 84 chr1 104940422 104940708 -137723645 - L1MD3 LINE L1 0 7995 7702 966 137 0 0 chr1 104940708 104940839 -137723514 - FLAM_C SINE Alu -12 131 1 1487 172 54 84 chr1 104940839 104941127 -137723226 - L1MD3 LINE L1 -293 7702 7187 467 143 78 0 chr1 104941130 104941207 -137723146 - MLT1F1 LTR MaLR -448 119 37 2313 98 7 0 chr1 104941224 104941519 -137722834 + AluSx SINE Alu 3 299 -13 195 100 0 0 chr1 104941538 104941568 -137722785 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1174 201 162 16 chr1 104941568 104941871 -137722482 - L1MD3 LINE L1 -959 7036 6690 657 195 226 49 chr1 104941953 104942179 -137722174 - L1MC4a LINE L1 -1392 6416 6159 26 0 0 0 chr1 104943011 104943037 -137721316 + AT_rich Low_complexity Low_complexity 1 26 0 1739 170 25 0 chr1 104943038 104943315 -137721038 - AluJo SINE Alu -28 284 1 394 267 42 0 chr1 104943687 104943807 -137720546 - L1ME2 LINE L1 -1 6163 6039 2091 102 28 7 chr1 104943830 104944115 -137720238 - AluSq SINE Alu -22 291 1 537 234 190 5 chr1 104944962 104945146 -137719207 + MIR SINE MIR 44 261 -1 2248 96 0 7 chr1 104945496 104945788 -137718565 + AluSc SINE Alu 1 290 -19 351 233 151 87 chr1 104945956 104946175 -137718178 - MER112 DNA MER1_type 0 260 28 253 288 110 0 chr1 104946464 104946537 -137717816 - L2 LINE L2 -5 3267 3187 1798 97 9 130 chr1 104946709 104947048 -137717305 - AluSx SINE Alu -4 298 1 240 244 104 37 chr1 104947266 104947401 -137716952 + L2 LINE L2 3169 3312 -1 2501 127 59 35 chr1 104949355 104949394 -137714959 - L1MB3 LINE L1 -7 6176 6139 2026 110 46 3 chr1 104949394 104949676 -137714677 - AluSg SINE Alu -11 299 6 2501 127 59 35 chr1 104949676 104950094 -137714259 - L1MB3 LINE L1 -44 6139 5708 2193 112 7 0 chr1 104950423 104950727 -137713626 + AluY SINE Alu 1 306 -5 575 268 62 16 chr1 104951087 104951281 -137713072 - MIR SINE MIR -55 207 5 218 217 0 0 chr1 104951946 104951992 -137712361 + T-rich Low_complexity Low_complexity 1 46 0 592 137 11 0 chr1 104953040 104953135 -137711218 - AluJo SINE Alu -178 134 39 30 0 0 0 chr1 104955209 104955239 -137709114 + AT_rich Low_complexity Low_complexity 1 30 0 360 111 0 0 chr1 104955673 104955727 -137708626 + (CTGGGG)n Simple_repeat Simple_repeat 2 55 0 361 235 68 30 chr1 104956133 104956265 -137708088 - MIR SINE MIR -105 157 21 1602 219 105 8 chr1 104957475 104957876 -137706477 + L1ME1 LINE L1 5722 6161 -5 508 268 121 83 chr1 104958412 104958509 -137705844 + L1MEc LINE L1 2146 2238 -3977 682 197 171 80 chr1 104958509 104958748 -137705605 - MIR SINE MIR 0 262 2 508 268 121 83 chr1 104958748 104959362 -137704991 + L1MEc LINE L1 2238 2831 -3384 725 224 31 19 chr1 104959399 104959506 -137704847 + MLT1E LTR MaLR 1 112 -481 1317 182 104 118 chr1 104959506 104960033 -137704320 + MLT2B1 LTR ERVL 1 520 0 725 224 31 19 chr1 104960033 104960086 -137704267 + MLT1E LTR MaLR 112 163 -430 658 178 42 0 chr1 104960096 104960214 -137704139 + MLT1E LTR MaLR 471 593 0 2465 123 80 5 chr1 104960219 104960617 -137703736 - MSTA LTR MaLR 0 428 1 588 256 144 13 chr1 104960680 104961055 -137703298 + L1MEc LINE L1 2923 3346 -2869 321 317 60 44 chr1 104961073 104961439 -137702914 + L1MEc LINE L1 3393 3764 -2451 21 36 0 0 chr1 104961486 104961514 -137702839 + AT_rich Low_complexity Low_complexity 1 28 0 306 253 96 27 chr1 104961627 104961773 -137702580 + MER110 LTR ERV1 201 356 -135 791 218 42 57 chr1 104961776 104962038 -137702315 + L1MC5 LINE L1 6923 7180 -781 1334 218 64 74 chr1 104962132 104962724 -137701629 + L1MC5 LINE L1 7336 7921 -40 1820 165 90 63 chr1 104962745 104963224 -137701129 - LTR22B LTR ERVK 0 492 1 202 214 0 0 chr1 104964511 104964553 -137699800 - L2 LINE L2 -5 3267 3226 257 338 15 0 chr1 104964682 104964815 -137699538 - L2 LINE L2 -224 3048 2914 2296 120 0 0 chr1 104965136 104965435 -137698918 - AluSx SINE Alu -13 299 1 2413 97 0 0 chr1 104965843 104966142 -137698211 - AluSx SINE Alu -13 299 1 1411 148 18 0 chr1 104966306 104966529 -137697824 + L1PA16 LINE L1 5933 6159 -7 656 174 9 0 chr1 104966530 104966645 -137697708 + FLAM_C SINE Alu 2 117 -26 31 26 0 0 chr1 104966654 104966692 -137697661 + AT_rich Low_complexity Low_complexity 1 38 0 185 0 40 0 chr1 104967333 104967358 -137696995 + (TG)n Simple_repeat Simple_repeat 2 27 0 1966 117 67 0 chr1 104967897 104968180 -137696173 - AluSg SINE Alu -8 302 1 2146 100 7 7 chr1 104968253 104968544 -137695809 - AluSc SINE Alu -18 291 1 496 175 0 12 chr1 104968785 104968865 -137695488 - LTR35 LTR ERV1 0 618 540 425 172 11 11 chr1 104968993 104969080 -137695273 - LTR43 LTR ERV1 -325 277 191 216 250 0 21 chr1 104969358 104969406 -137694947 + polypurine Low_complexity Low_complexity 5 51 0 311 270 117 9 chr1 104969459 104969570 -137694783 + MIR3 SINE MIR 77 199 -9 343 236 79 42 chr1 104969594 104969759 -137694594 + L1M4 LINE L1 3095 3265 -2881 274 235 0 25 chr1 104969838 104969919 -137694434 + T-rich Low_complexity Low_complexity 5 83 0 1911 142 3 20 chr1 104970140 104970436 -137693917 - AluJo SINE Alu -21 291 1 553 277 19 25 chr1 104970719 104970878 -137693475 + MIR SINE MIR 21 178 -84 2002 114 26 0 chr1 104970938 104971210 -137693143 - AluSx SINE Alu -25 287 9 273 260 80 10 chr1 104971469 104971569 -137692784 + MER5A DNA MER1_type 39 145 -44 532 46 15 0 chr1 104971928 104971993 -137692360 + MLT1B LTR MaLR 1 66 -324 377 230 0 0 chr1 104972152 104972226 -137692127 + MLT1B LTR MaLR 81 154 -236 274 271 14 0 chr1 104973750 104973820 -137690533 - MER96 DNA MER1_type? -104 71 1 22 35 0 0 chr1 104974601 104974630 -137689723 + AT_rich Low_complexity Low_complexity 1 29 0 562 249 131 46 chr1 104975293 104975394 -137688959 + MIR SINE MIR 3 94 -168 2334 116 0 0 chr1 104975394 104975705 -137688648 - AluSx SINE Alu -1 311 1 562 249 131 46 chr1 104975705 104975840 -137688513 + MIR SINE MIR 94 259 -3 322 265 92 78 chr1 104976092 104976386 -137687967 + L1ME4a LINE L1 5588 5885 -236 295 254 90 8 chr1 104976427 104976549 -137687804 + L1ME4a LINE L1 5959 6090 -31 355 200 56 11 chr1 104977086 104977176 -137687177 - L1ME4a LINE L1 -37 6084 5991 542 309 74 13 chr1 104977215 104977445 -137686908 - MIR SINE MIR -6 256 13 405 297 113 42 chr1 104977489 104977881 -137686472 - L1ME4a LINE L1 -196 5925 5486 339 208 195 71 chr1 104977881 104977940 -137686413 + MER112 DNA MER1_type 2 52 -204 297 0 0 0 chr1 104977940 104977973 -137686380 + (CA)n Simple_repeat Simple_repeat 2 34 0 339 208 195 71 chr1 104977973 104978139 -137686214 + MER112 DNA MER1_type 52 255 -1 405 297 113 42 chr1 104978139 104978249 -137686104 - L1ME4a LINE L1 -635 5486 5385 196 258 109 78 chr1 104978741 104978869 -137685484 + L2 LINE L2 2286 2417 -897 1061 219 164 12 chr1 104979077 104979333 -137685020 - AluSc SINE Alu -2 297 3 262 206 190 7 chr1 104979714 104979794 -137684559 + MIR SINE MIR 86 175 -33 2346 101 0 7 chr1 104981726 104982032 -137682321 + AluSx SINE Alu 1 304 -8 575 253 81 11 chr1 104982434 104982608 -137681745 - MIR SINE MIR -32 230 45 343 60 20 0 chr1 104984958 104985008 -137679345 - MADE1 DNA Mariner 0 80 30 2908 233 81 15 chr1 104985017 104985800 -137678553 - L1MB8 LINE L1 -32 6146 5308 2189 127 0 13 chr1 104985800 104986107 -137678246 - AluSx SINE Alu -9 303 1 2908 233 81 15 chr1 104986107 104986122 -137678231 - L1MB8 LINE L1 -870 5308 5295 5544 146 32 8 chr1 104986163 104987400 -137676953 - L1MA4 LINE L1 -97 6203 4943 2717 196 53 19 chr1 104987401 104988176 -137676177 - L1MB8 LINE L1 -838 5672 4617 4928 231 41 13 chr1 104988177 104989499 -137674854 - L1ME4a LINE L1 -878 5268 3910 6105 187 27 29 chr1 104989503 104990280 -137674073 - ERVL LTR ERVL -2917 2847 2070 1628 161 0 15 chr1 104990280 104990554 -137673799 + AluJb SINE Alu 6 275 -37 180 0 0 0 chr1 104990561 104990581 -137673772 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6105 187 27 29 chr1 104990581 104990966 -137673387 - ERVL LTR ERVL -3700 2064 1679 2570 133 64 7 chr1 104990970 104991375 -137672978 - MSTA LTR MaLR 0 428 1 2369 84 0 7 chr1 104991752 104992060 -137672293 + AluY SINE Alu 1 306 -5 322 327 26 45 chr1 104992724 104992880 -137671473 + L2 LINE L2 2893 3045 -227 218 329 0 0 chr1 104993085 104993155 -137671198 + L2 LINE L2 3208 3277 -36 560 284 82 22 chr1 104993173 104993405 -137670948 - MIR SINE MIR -1 261 16 208 239 0 0 chr1 104994065 104994111 -137670242 + L2 LINE L2 3263 3308 -5 260 309 38 79 chr1 104994131 104994323 -137670030 - MIR SINE MIR -50 212 30 657 292 35 81 chr1 104994323 104994755 -137669598 + MER34 LTR ERV1 1 412 -130 425 192 0 0 chr1 104994753 104994831 -137669522 + LTR32 LTR ERVL 10 87 -384 * 1440 150 17 17 chr1 104994847 104995087 -137669266 + LTR32 LTR ERVL 232 471 0 318 239 0 43 chr1 104995105 104995197 -137669156 + MER34 LTR ERV1 435 522 -20 191 299 90 37 chr1 104996134 104996268 -137668085 - L2 LINE L2 -212 3060 2920 300 27 0 0 chr1 104996286 104996323 -137668030 + (TG)n Simple_repeat Simple_repeat 2 38 0 334 263 125 0 chr1 104996332 104996492 -137667861 - L1ME4a LINE L1 -3 6118 5939 478 265 7 29 chr1 104996843 104996979 -137667374 + L2 LINE L2 3181 3313 0 211 416 0 0 chr1 104996989 104997078 -137667275 - L2 LINE L2 0 3272 3184 518 315 30 6 chr1 104997121 104997286 -137667067 + L3 LINE CR1 1404 1572 -5 184 348 0 43 chr1 104998447 104998539 -137665814 + L2 LINE L2 3185 3272 0 1053 105 0 0 chr1 104998575 104998737 -137665616 + (TCCA)n Simple_repeat Simple_repeat 1 162 0 243 289 42 84 chr1 104998741 104998883 -137665470 - L2 LINE L2 -1 3271 3136 366 123 0 0 chr1 105000147 105000204 -137664149 + (TG)n Simple_repeat Simple_repeat 2 58 0 317 300 0 0 chr1 105000206 105000296 -137664057 - L1MC4 LINE L1 -1339 6703 6614 309 273 66 25 chr1 105000224 105000345 -137664008 + L1MCa LINE L1 1995 2120 -4306 * 304 138 52 0 chr1 105000377 105000435 -137663918 - MER57A LTR ERV1 0 403 343 888 152 7 13 chr1 105000562 105000713 -137663640 - MER57A LTR ERV1 -251 152 3 302 183 99 14 chr1 105001152 105001223 -137663130 + L2 LINE L2 3168 3244 -28 279 368 14 14 chr1 105003011 105003155 -137661198 - MIR3 SINE MIR -41 167 24 2071 128 20 0 chr1 105003197 105003502 -137660851 - AluSx SINE Alu -1 311 1 447 294 80 35 chr1 105003945 105004146 -137660207 - MIR SINE MIR 0 262 53 21 0 0 0 chr1 105004842 105004863 -137659490 + AT_rich Low_complexity Low_complexity 1 21 0 419 208 0 50 chr1 105005869 105005970 -137658383 + L2 LINE L2 3217 3312 -1 471 264 334 13 chr1 105007347 105007646 -137656707 - MLT1K LTR MaLR -193 395 1 442 298 94 33 chr1 105008319 105008500 -137655853 + MIR SINE MIR 63 254 -8 22 35 0 0 chr1 105008526 105008555 -137655798 + AT_rich Low_complexity Low_complexity 1 29 0 253 270 162 48 chr1 105008738 105008889 -137655464 - MIR3 SINE MIR -25 183 21 1680 257 89 67 chr1 105010088 105010671 -137653682 - MLT1F1 LTR MaLR 0 587 1 463 293 80 0 chr1 105010722 105010872 -137653481 + MLT1L LTR MaLR 452 613 -2 492 241 101 89 chr1 105010964 105011446 -137652907 - L2 LINE L2 0 3313 2708 31279 62 8 3 chr1 105011450 105016244 -137648109 - L1PA6 LINE L1 0 6154 1338 639 220 6 60 chr1 105016250 105016432 -137647921 - L1MA9 LINE L1 -205 6107 5936 1286 241 0 4 chr1 105016436 105016710 -137647643 + MER82 DNA MER2_type 349 621 -32 1914 144 20 0 chr1 105016849 105017141 -137647212 - AluSx SINE Alu -3 309 12 26 0 0 0 chr1 105017556 105017582 -137646771 + AT_rich Low_complexity Low_complexity 1 26 0 2570 59 0 3 chr1 105018787 105019117 -137645236 - AluY SINE Alu 0 329 1 773 276 35 31 chr1 105019426 105019680 -137644673 + MIR SINE MIR 8 262 0 225 365 40 16 chr1 105020311 105020437 -137643916 - L2 LINE L2 -5 3308 3180 2449 96 0 0 chr1 105020487 105020790 -137643563 - AluSg SINE Alu -7 303 1 213 312 21 43 chr1 105021450 105021543 -137642810 + L3b LINE CR1 1177 1267 -316 1972 117 4 0 chr1 105022841 105023115 -137641238 + AluY SINE Alu 1 275 -36 7714 52 0 2 chr1 105023115 105024712 -137639641 + L1PA5 LINE L1 4558 6153 -1 5907 139 30 4 chr1 105024712 105025687 -137638666 + Ricksha DNA DNA 2246 3245 -6 582 120 0 0 chr1 105025696 105025771 -137638582 - AluS SINE Alu -236 77 3 2931 214 47 44 chr1 105025773 105025825 -137638528 - L1MEc LINE L1 -3001 3214 3164 1111 59 5 43 chr1 105025825 105026011 -137638342 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2931 214 47 44 chr1 105026011 105026053 -137638300 - L1MEc LINE L1 -3051 3164 3124 1631 168 31 62 chr1 105026053 105026374 -137637979 - AluJo SINE Alu -1 311 1 2931 214 47 44 chr1 105026374 105027441 -137636912 - L1MEc LINE L1 -3091 3124 2092 212 239 22 0 chr1 105027856 105027902 -137636451 - L2 LINE L2 0 3313 3267 231 214 60 83 chr1 105028301 105028385 -137635968 + MER9 LTR ERVK 55 136 -375 487 316 20 20 chr1 105028524 105028676 -137635677 + L3 LINE CR1 1387 1538 -39 408 198 16 79 chr1 105030154 105030280 -137634073 + MIR SINE MIR 17 134 -74 * 725 299 90 51 chr1 105030272 105030752 -137633601 + L2 LINE L2 2164 2624 -648 2261 110 0 0 chr1 105030752 105031044 -137633309 - AluSx SINE Alu -15 297 6 725 299 90 51 chr1 105031044 105031621 -137632732 + L2 LINE L2 2624 3272 0 1959 140 20 128 chr1 105032390 105032796 -137631557 - MLT1A1 LTR MaLR -2 363 2 1862 179 46 46 chr1 105033138 105033528 -137630825 + MLT1B LTR MaLR 1 390 0 282 242 62 75 chr1 105034195 105034356 -137629997 - HAL1 LINE L1 -83 2424 2266 363 263 12 53 chr1 105034406 105034577 -137629776 - HAL1b LINE L1 -439 909 746 233 222 67 33 chr1 105136204 105136294 -137528059 + MER112 DNA MER1_type 1 93 -167 1210 119 6 0 chr1 105136966 105137142 -137527211 - AluSg/x SINE Alu -14 296 120 1641 137 44 26 chr1 105137522 105137821 -137526532 + AluSx SINE Alu 6 309 0 821 131 0 51 chr1 105138407 105138544 -137525809 - FLAM_C SINE Alu -3 130 1 585 93 144 0 chr1 105140946 105141043 -137523310 - HY1 scRNA scRNA -1 111 1 1122 210 114 33 chr1 105141305 105141576 -137522777 + AluJo SINE Alu 3 295 -17 2161 139 0 3 chr1 105141578 105141881 -137522472 + AluSx SINE Alu 1 302 -10 493 272 183 35 chr1 105141927 105142354 -137521999 - MLT1H1 LTR MaLR -16 539 50 388 288 103 22 chr1 105142433 105142617 -137521736 - MIR SINE MIR -31 231 33 294 266 62 9 chr1 105143137 105143250 -137521103 + MER69A DNA AcHobo 31 149 -28 702 175 25 0 chr1 105143406 105143526 -137520827 + AluSg/x SINE Alu 152 274 -38 24 0 0 0 chr1 105143837 105143861 -137520492 + AT_rich Low_complexity Low_complexity 1 24 0 2166 122 0 0 chr1 105144893 105145181 -137519172 + AluSx SINE Alu 1 288 -24 2121 125 3 10 chr1 105145573 105145885 -137518468 - AluSg SINE Alu 0 310 1 421 297 206 42 chr1 105146489 105147216 -137517137 - L2 LINE L2 -5 3267 2422 2142 161 74 37 chr1 105147216 105147610 -137516743 + MSTB2 LTR MaLR 1 414 -43 2247 109 0 7 chr1 105147610 105147912 -137516441 + AluSx SINE Alu 5 304 -8 2142 161 74 37 chr1 105147912 105147952 -137516401 + MSTB2 LTR MaLR 414 451 -6 943 293 202 60 chr1 105147968 105148620 -137515733 - L2 LINE L2 -898 2416 1858 325 87 0 0 chr1 105148620 105148666 -137515687 - L1PA4 LINE L1 -164 5991 5946 1389 24 12 0 chr1 105148666 105148829 -137515524 + L1PA4 LINE L1 5987 6155 0 943 293 202 60 chr1 105148829 105150044 -137514309 - L2 LINE L2 -1455 1859 231 693 328 0 25 chr1 105150271 105150475 -137513878 - MIR SINE MIR -17 245 47 202 315 56 37 chr1 105150766 105150816 -137513537 - L3 LINE CR1 -246 1331 1283 2175 133 0 16 chr1 105150816 105151131 -137513222 - AluSx SINE Alu -2 310 1 202 315 56 37 chr1 105151131 105151172 -137513181 - L3 LINE CR1 -294 1283 1235 1734 145 60 11 chr1 105151172 105151455 -137512898 - AluJb SINE Alu -15 297 1 202 315 56 37 chr1 105151455 105151470 -137512883 - L3 LINE CR1 -342 1235 1222 24 0 0 0 chr1 105151473 105151497 -137512856 + AT_rich Low_complexity Low_complexity 1 24 0 713 329 151 10 chr1 105151707 105152196 -137512157 - L3 LINE CR1 -622 955 398 291 329 0 0 chr1 105153078 105153148 -137511205 + polypyrimidine Low_complexity Low_complexity 1 70 0 1681 180 0 10 chr1 105153148 105153442 -137510911 - AluJo SINE Alu -8 304 14 5942 93 28 147 chr1 105153851 105154323 -137510030 - Tigger3b DNA MER2_type -1797 1232 706 1785 147 63 20 chr1 105154323 105154622 -137509731 + AluJo SINE Alu 1 312 0 5942 93 28 147 chr1 105154622 105154873 -137509480 - Tigger3b DNA MER2_type -2323 706 427 2185 115 7 3 chr1 105154873 105155177 -137509176 - AluSq SINE Alu -8 305 1 5942 93 28 147 chr1 105155177 105155861 -137508492 - Tigger3b DNA MER2_type -2602 427 1 369 0 0 0 chr1 105157210 105157251 -137507102 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr1 105157709 105157730 -137506623 + (T)n Simple_repeat Simple_repeat 1 21 0 3291 125 68 48 chr1 105157827 105158087 -137506266 - MER51A LTR ERV1 0 634 380 2073 106 0 14 chr1 105158087 105158370 -137505983 + AluSg SINE Alu 1 279 -31 3291 125 68 48 chr1 105158370 105158731 -137505622 - MER51A LTR ERV1 -254 380 1 234 271 86 0 chr1 105158893 105158963 -137505390 - MIR3 SINE MIR -38 170 95 21 0 0 0 chr1 105159521 105159542 -137504811 + AT_rich Low_complexity Low_complexity 1 21 0 33 66 0 0 chr1 105159967 105160028 -137504325 + AT_rich Low_complexity Low_complexity 1 61 0 2288 119 0 0 chr1 105160096 105160408 -137503945 - AluSx SINE Alu 0 312 1 33 0 0 0 chr1 105162054 105162087 -137502266 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr1 105162394 105162425 -137501928 + AT_rich Low_complexity Low_complexity 1 31 0 2306 114 0 0 chr1 105162494 105162791 -137501562 - AluSx SINE Alu -15 297 1 346 235 151 25 chr1 105165978 105166097 -137498256 + MER69 DNA AcHobo 14 147 -2379 24 0 0 0 chr1 105166168 105166192 -137498161 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr1 105166293 105166339 -137498014 + AT_rich Low_complexity Low_complexity 1 46 0 286 318 68 15 chr1 105166358 105166393 -137497960 - L2 LINE L2 0 3272 3240 562 101 0 0 chr1 105166393 105166472 -137497881 - MADE1 DNA Mariner 0 80 2 286 318 68 15 chr1 105166472 105166568 -137497785 - L2 LINE L2 -32 3240 3134 24 0 0 0 chr1 105167750 105167774 -137496579 + AT_rich Low_complexity Low_complexity 1 24 0 454 104 0 0 chr1 105168483 105168550 -137495803 - AluSc SINE Alu -11 298 232 1171 128 10 0 chr1 105168552 105168747 -137495606 + L1MB4 LINE L1 5983 6179 -1 989 304 158 51 chr1 105168751 105169560 -137494793 + L3 LINE CR1 676 1571 -6 463 316 16 49 chr1 105170376 105170620 -137493733 - L3 LINE CR1 -160 1417 1182 321 89 0 0 chr1 105170730 105170775 -137493578 + (TAGTG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr1 105171175 105171196 -137493157 + AT_rich Low_complexity Low_complexity 1 21 0 194 49 0 98 chr1 105171477 105171518 -137492835 + (T)n Simple_repeat Simple_repeat 1 37 0 447 295 0 0 chr1 105173115 105173264 -137491089 + L1MC4 LINE L1 6888 7036 -1006 21 0 0 0 chr1 105173275 105173296 -137491057 + AT_rich Low_complexity Low_complexity 1 21 0 580 266 51 68 chr1 105173357 105173653 -137490700 - MLT1H1 LTR MaLR -234 356 38 1879 143 30 13 chr1 105173908 105174209 -137490144 - AluJb SINE Alu -6 306 1 236 30 30 0 chr1 105174218 105174251 -137490102 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1258 92 25 5 chr1 105174251 105174447 -137489906 - L1PA5 LINE L1 -16 6138 5939 236 30 30 0 chr1 105174563 105174596 -137489757 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 26290 53 3 0 chr1 105174596 105178880 -137485473 - L1PA5 LINE L1 -16 6138 1844 14110 104 12 4 chr1 105178982 105181109 -137483244 - L1P LINE L1 -4002 2144 1 242 291 22 52 chr1 105181125 105181259 -137483094 - HAL1b LINE L1 -473 875 746 483 249 58 12 chr1 105181559 105181732 -137482621 - HAL1 LINE L1 -702 1805 1625 2267 91 3 3 chr1 105181942 105182240 -137482113 - AluSq SINE Alu -15 298 1 246 348 128 23 chr1 105182462 105182767 -137481586 + L3 LINE CR1 1235 1571 -6 1724 162 17 35 chr1 105183214 105183504 -137480849 - AluJo SINE Alu -22 290 6 238 281 215 33 chr1 105183594 105183715 -137480638 - MIR SINE MIR -70 192 50 4636 48 39 3 chr1 105183914 105184498 -137479855 + LTR14B LTR ERVK 4 608 0 299 230 108 38 chr1 105184600 105184733 -137479620 - MIR SINE MIR -72 190 45 514 130 241 9 chr1 105185043 105185151 -137479202 - FLAM_C SINE Alu 0 133 1 245 295 0 26 chr1 105185278 105185356 -137478997 - L2 LINE L2 -37 3276 3201 865 185 34 6 chr1 105185592 105185770 -137478583 - MER5A DNA MER1_type -6 183 1 24 32 0 0 chr1 105186109 105186140 -137478213 + AT_rich Low_complexity Low_complexity 1 31 0 764 217 0 43 chr1 105186160 105186321 -137478032 - AluJo SINE Alu -22 290 137 2477 76 3 0 chr1 105186802 105187103 -137477250 - AluY SINE Alu -9 302 1 759 172 0 15 chr1 105187592 105187726 -137476627 - AluJo SINE Alu -180 132 1 2261 156 83 11 chr1 105188255 105188691 -137475662 + MLT1C LTR MaLR 1 467 0 1298 33 0 0 chr1 105189786 105189938 -137474415 - AluY SINE Alu -14 297 146 432 276 0 9 chr1 105190480 105190585 -137473768 - MIR SINE MIR -109 153 50 22 0 0 0 chr1 105190830 105190852 -137473501 + AT_rich Low_complexity Low_complexity 1 22 0 1299 174 47 77 chr1 105190862 105191160 -137473193 + AluJo SINE Alu 1 289 -23 2153 115 3 0 chr1 105191263 105191550 -137472803 - AluSq SINE Alu -25 288 1 3959 168 41 32 chr1 105191550 105192240 -137472113 - L1MB2 LINE L1 -41 6130 5448 2147 142 0 0 chr1 105192240 105192550 -137471803 - AluJb SINE Alu -2 310 1 3959 168 41 32 chr1 105192550 105192665 -137471688 - L1MB2 LINE L1 -723 5448 5336 2024 150 10 0 chr1 105192665 105192965 -137471388 - AluSx SINE Alu -9 303 1 3959 168 41 32 chr1 105192965 105193441 -137470912 - L1MB2 LINE L1 -835 5336 4824 36 0 0 0 chr1 105194037 105194073 -137470280 + AT_rich Low_complexity Low_complexity 1 36 0 2159 123 13 0 chr1 105194398 105194722 -137469631 - AluSx SINE Alu 0 328 1 2156 121 0 16 chr1 105194724 105195038 -137469315 - AluSx SINE Alu -3 309 1 263 337 0 10 chr1 105195200 105195298 -137469055 + MIR SINE MIR 86 182 -80 592 248 5 60 chr1 105195574 105195792 -137468561 - MER3 DNA MER1_type 0 209 4 754 226 60 46 chr1 105195805 105196022 -137468331 + MER58A DNA MER1_type 5 224 0 194 347 107 33 chr1 105196146 105196296 -137468057 + L2 LINE L2 2719 2879 -435 214 313 50 12 chr1 105196528 105196608 -137467745 + L2 LINE L2 3229 3311 -2 1362 134 0 0 chr1 105197401 105197587 -137466766 + AluSg/x SINE Alu 113 298 -14 4568 197 55 49 chr1 105197587 105198043 -137466310 - Charlie1a DNA MER1_type -1449 1312 860 1897 86 0 79 chr1 105198043 105198390 -137465963 - AluSg SINE Alu 0 324 2 4568 197 55 49 chr1 105198390 105199229 -137465124 - Charlie1a DNA MER1_type -1901 860 8 2215 70 25 41 chr1 105200029 105200343 -137464010 + AluSc SINE Alu 1 309 0 305 20 0 41 chr1 105201503 105201552 -137462801 - L1PA2 LINE L1 0 6155 6109 381 203 0 0 chr1 105201898 105201967 -137462386 + Tigger2 DNA MER2_type 1 69 -2649 * 1742 152 125 32 chr1 105201957 105202365 -137461988 + Tigger2 DNA MER2_type 2273 2718 0 370 206 88 73 chr1 105202642 105202778 -137461575 - MIR SINE MIR -94 168 31 9637 186 50 46 chr1 105203577 105204210 -137460143 - L1MC3 LINE L1 0 7785 7156 1443 186 43 63 chr1 105204210 105204578 -137459775 - MLT1B LTR MaLR 0 390 29 2665 33 0 3 chr1 105204578 105204885 -137459468 + AluY SINE Alu 1 306 -5 1443 186 43 63 chr1 105204885 105204914 -137459439 - MLT1B LTR MaLR -361 29 1 9637 186 50 46 chr1 105204914 105206565 -137457788 - L1MC3 LINE L1 -629 7156 5512 1632 124 4 0 chr1 105206565 105206791 -137457562 - AluSq SINE Alu -2 311 85 252 0 0 0 chr1 105206791 105206819 -137457534 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 2087 107 4 0 chr1 105206819 105207099 -137457254 - AluSg1 SINE Alu -28 281 1 688 81 0 0 chr1 105207099 105207186 -137457167 - AluSq SINE Alu -217 95 9 9637 186 50 46 chr1 105207186 105207947 -137456406 - L1MC3 LINE L1 -2272 5513 4639 2361 85 3 10 chr1 105208487 105208793 -137455560 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr1 105210370 105210394 -137453959 + AT_rich Low_complexity Low_complexity 1 24 0 635 154 9 9 chr1 105215436 105215546 -137448807 + FLAM_A SINE Alu 24 133 -9 242 261 250 0 chr1 105215750 105215838 -137448515 + MIR3 SINE MIR 86 195 -13 2005 141 3 3 chr1 105216839 105217145 -137447208 - AluSx SINE Alu -6 306 1 442 327 42 0 chr1 105217858 105218026 -137446327 + MIR3 SINE MIR 33 207 -1 2079 127 3 7 chr1 105218029 105218336 -137446017 + AluSx SINE Alu 1 306 -6 2061 115 39 21 chr1 105219182 105219513 -137444840 - MER1B DNA MER1_type -2 337 1 2304 117 0 0 chr1 105219724 105220033 -137444320 - AluSx SINE Alu -3 309 1 262 279 47 0 chr1 105220295 105220381 -137443972 - L2 LINE L2 -42 3271 3182 1634 182 28 31 chr1 105220398 105220755 -137443598 + MLT1A1 LTR MaLR 10 365 0 876 250 113 34 chr1 105220909 105221454 -137442899 - L2 LINE L2 -15 3298 2708 655 247 72 8 chr1 105221460 105221695 -137442658 + MER112 DNA MER1_type 5 254 -6 642 293 49 13 chr1 105221695 105221920 -137442433 - L2 LINE L2 -724 2590 2358 1631 176 26 68 chr1 105222263 105222644 -137441709 - MLT1A1 LTR MaLR 0 365 1 222 350 70 0 chr1 105223176 105223276 -137441077 - L2 LINE L2 -16 3297 3191 526 186 16 31 chr1 105223299 105223428 -137440925 - L1MC3 LINE L1 -6 7779 7653 398 266 0 28 chr1 105223524 105223633 -137440720 - MIR3 SINE MIR -16 192 87 300 297 42 17 chr1 105223746 105223864 -137440489 - L2 LINE L2 -1 3312 3192 2083 180 83 15 chr1 105223982 105224449 -137439904 + MLT1D LTR MaLR 2 500 -5 1414 214 38 55 chr1 105224656 105225076 -137439277 + L1ME3A LINE L1 5702 6114 -56 25 31 0 0 chr1 105225690 105225722 -137438631 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr1 105226571 105226605 -137437748 + AT_rich Low_complexity Low_complexity 1 34 0 416 270 0 0 chr1 105226818 105226918 -137437435 - MER5A DNA MER1_type -80 109 10 1166 138 98 13 chr1 105226940 105227165 -137437188 - MSTA LTR MaLR 0 428 185 34967 84 4 28 chr1 105227165 105233461 -137430892 - L1PA6 LINE L1 -3 6151 11 841 121 83 19 chr1 105233486 105233643 -137430710 - MSTA LTR MaLR -208 167 1 582 168 10 0 chr1 105234487 105234588 -137429765 - MER90 LTR ERV1 0 614 513 307 219 156 44 chr1 105234734 105234939 -137429414 - L2 LINE L2 -1232 2082 1855 1849 166 39 0 chr1 105234949 105235280 -137429073 - MER2 DNA MER2_type 0 344 1 225 0 0 0 chr1 105235330 105235355 -137428998 + (TG)n Simple_repeat Simple_repeat 2 26 0 1127 166 63 8 chr1 105235543 105235796 -137428557 - L1MC3 LINE L1 -1 7784 7518 1226 177 183 7 chr1 105235846 105236146 -137428207 + MER93b LTR ERV1 17 369 -4 2368 173 11 9 chr1 105236152 105236604 -137427749 - L1MC3 LINE L1 -285 7500 7048 2242 107 0 7 chr1 105236644 105236942 -137427411 + AluSc SINE Alu 1 296 -13 1662 188 19 23 chr1 105237231 105237540 -137426813 - AluJo SINE Alu -4 308 1 610 282 28 4 chr1 105237627 105237822 -137426531 + MIR SINE MIR 2 200 -62 2068 147 0 0 chr1 105238875 105239181 -137425172 + AluSx SINE Alu 1 306 -6 329 309 168 13 chr1 105239634 105239783 -137424570 - MIR3 SINE MIR -23 185 14 366 283 201 33 chr1 105240332 105240516 -137423837 + MIR SINE MIR 48 262 0 1256 204 59 59 chr1 105240620 105241046 -137423307 - HsTC2 DNA Tc2 -3 1895 1294 301 245 20 20 chr1 105241124 105241226 -137423127 - HsTC2 DNA Tc2 -1787 111 10 864 160 0 0 chr1 105241233 105241358 -137422995 + FLAM_C SINE Alu 3 127 -16 25 0 0 28 chr1 105241428 105241444 -137422909 + AT_rich Low_complexity Low_complexity 1 16 -19 2756 13 0 6 chr1 105241444 105241756 -137422597 + AluYa5 SINE Alu 1 310 -1 25 0 0 28 chr1 105241756 105241775 -137422578 + AT_rich Low_complexity Low_complexity 16 35 0 2106 133 7 7 chr1 105241820 105242120 -137422233 + AluSx SINE Alu 2 301 -11 499 234 117 7 chr1 105242517 105242671 -137421682 - L1ME2 LINE L1 -6 6158 5988 424 299 62 7 chr1 105243468 105243612 -137420741 - L2 LINE L2 -1 3312 3161 183 327 19 0 chr1 105243653 105243705 -137420648 - L2 LINE L2 -251 3021 2969 183 100 0 0 chr1 105243990 105244020 -137420333 + (GA)n Simple_repeat Simple_repeat 2 31 0 2491 28 0 47 chr1 105244348 105244666 -137419687 - AluY SINE Alu -8 303 1 384 277 134 8 chr1 105244685 105244804 -137419549 + L2 LINE L2 3138 3271 -1 230 369 39 19 chr1 105244985 105245088 -137419265 + L2 LINE L2 3149 3253 -19 429 239 23 46 chr1 105245128 105245258 -137419095 - L2 LINE L2 -1 3312 3186 1648 125 14 10 chr1 105245260 105245555 -137418798 + L1 LINE L1 4951 5246 -900 380 254 86 39 chr1 105245687 105245919 -137418434 + MLT1J LTR MaLR 269 511 0 469 235 35 41 chr1 105246125 105246295 -137418058 - L1MC5 LINE L1 -44 7917 7749 347 260 20 20 chr1 105246417 105246517 -137417836 + CT-rich Low_complexity Low_complexity 4 103 0 2240 93 0 10 chr1 105248588 105248888 -137415465 - AluSx SINE Alu -15 297 1 21 57 0 0 chr1 105248962 105248997 -137415356 + AT_rich Low_complexity Low_complexity 1 35 0 261 268 14 28 chr1 105250085 105250156 -137414197 + L2 LINE L2 3201 3270 -43 216 176 20 49 chr1 105250486 105250588 -137413765 + (CCCCG)n Simple_repeat Simple_repeat 5 103 0 23 33 0 0 chr1 105250597 105250627 -137413726 + GC_rich Low_complexity Low_complexity 1 30 0 499 135 22 0 chr1 105251374 105251463 -137412890 - AluSp/q SINE Alu -19 294 204 250 182 0 55 chr1 105251463 105251501 -137412852 - AluJb SINE Alu -131 171 132 2338 42 0 21 chr1 105251501 105251825 -137412528 - AluY SINE Alu 0 318 1 2445 72 0 3 chr1 105251825 105252132 -137412221 - AluY SINE Alu -5 306 1 250 182 0 55 chr1 105252132 105252146 -137412207 - AluJb SINE Alu -168 134 120 2343 79 3 13 chr1 105252518 105252821 -137411532 + AluSq SINE Alu 1 300 -13 213 226 38 0 chr1 105252943 105252996 -137411357 - L2 LINE L2 0 3272 3218 224 275 72 0 chr1 105254235 105254304 -137410049 - MIR SINE MIR -90 172 99 221 170 75 38 chr1 105254526 105254579 -137409774 - MIR SINE MIR -96 166 112 942 155 43 16 chr1 105256516 105256703 -137407650 - MLT1D LTR MaLR -313 192 1 797 194 0 78 chr1 105257363 105257543 -137406810 + FRAM SINE Alu 1 166 0 1011 264 69 35 chr1 105257774 105258119 -137406234 - LTR40a LTR ERVL -131 388 28 1712 189 43 73 chr1 105258119 105258626 -137405727 - LTR22B LTR ERVK 0 492 1 1011 264 69 35 chr1 105258626 105258655 -137405698 - LTR40a LTR ERVL -491 28 1 208 217 14 29 chr1 105258663 105258732 -137405621 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 352 270 87 0 chr1 105258787 105258902 -137405451 + L2 LINE L2 3148 3272 0 2363 91 0 0 chr1 105259110 105259406 -137404947 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 105261844 105261865 -137402488 + AT_rich Low_complexity Low_complexity 1 21 0 707 312 17 26 chr1 105262622 105262856 -137401497 - MIR SINE MIR -29 233 2 22 35 0 0 chr1 105264030 105264059 -137400294 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr1 105264503 105264526 -137399827 + (T)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr1 105264927 105264949 -137399404 + AT_rich Low_complexity Low_complexity 1 22 0 1729 155 3 27 chr1 105265809 105266105 -137398248 + AluJb SINE Alu 1 289 -23 292 153 139 0 chr1 105266144 105266216 -137398137 - LTR33A LTR ERVL -3 520 439 328 222 71 56 chr1 105266595 105266721 -137397632 - LTR50 LTR ERVL -628 167 40 553 271 65 9 chr1 105267096 105267310 -137397043 - ERVL LTR ERVL -334 5430 5205 181 211 0 26 chr1 105267420 105267458 -137396895 - L3 LINE CR1 -44 1533 1497 1356 310 29 17 chr1 105267458 105267821 -137396532 - ERVL LTR ERVL -745 5019 4647 2156 115 10 3 chr1 105267821 105268116 -137396237 - AluSx SINE Alu -14 298 2 1356 310 29 17 chr1 105268116 105268272 -137396081 - ERVL LTR ERVL -1117 4647 4494 2343 306 85 15 chr1 105268312 105269358 -137394995 - ERVL LTR ERVL -1268 4386 3415 2511 63 7 0 chr1 105269358 105269660 -137394693 + AluY SINE Alu 1 304 -7 2343 306 85 15 chr1 105269660 105270527 -137393826 - ERVL LTR ERVL -2239 3415 2340 242 178 0 0 chr1 105270530 105270575 -137393778 + L1ME3A LINE L1 4887 4931 -1215 1372 243 62 74 chr1 105270631 105270779 -137393574 + L1ME3A LINE L1 5047 5195 -967 2367 91 7 0 chr1 105270779 105271088 -137393265 + AluY SINE Alu 1 311 0 1372 243 62 74 chr1 105271088 105271858 -137392495 + L1ME3A LINE L1 5195 5948 -214 331 304 13 44 chr1 105271929 105272087 -137392266 + L1ME3A LINE L1 5962 6114 -56 25 90 0 0 chr1 105272150 105272217 -137392136 + AT_rich Low_complexity Low_complexity 1 67 0 349 292 62 0 chr1 105272275 105272371 -137391982 - L2 LINE L2 -233 3080 2979 422 244 215 0 chr1 105272510 105272658 -137391695 + MER5A DNA MER1_type 4 188 -1 840 288 71 9 chr1 105272691 105273111 -137391242 - Tigger8 DNA MER2_type -46 620 175 1457 192 49 68 chr1 105273529 105273564 -137390789 - MLT2C2 LTR ERVL 0 464 430 423 0 0 0 chr1 105273564 105273611 -137390742 + (TG)n Simple_repeat Simple_repeat 1 47 0 1457 192 49 68 chr1 105273611 105274048 -137390305 - MLT2C2 LTR ERVL -34 430 1 380 350 16 16 chr1 105274674 105274860 -137389493 + L2 LINE L2 2175 2360 -954 1043 213 28 102 chr1 105275123 105275485 -137388868 - MER46C DNA MER2_type -3 335 1 317 277 64 50 chr1 105275857 105275998 -137388355 + MIR SINE MIR 117 259 -3 1356 263 123 41 chr1 105276661 105277575 -137386778 - L1ME3A LINE L1 -15 6155 5158 2200 193 10 58 chr1 105277678 105278191 -137386162 + LTR42 LTR ERVL 1 488 -7 1854 221 133 13 chr1 105278238 105278691 -137385662 - L1ME2 LINE L1 -116 6048 5520 444 75 0 161 chr1 105278691 105278753 -137385600 + MADE1 DNA Mariner 2 46 -34 2265 111 0 0 chr1 105278753 105279051 -137385302 - AluSq SINE Alu -15 298 1 444 75 0 161 chr1 105279051 105279081 -137385272 + MADE1 DNA Mariner 46 79 -1 1854 221 133 13 chr1 105279081 105279162 -137385191 - L1ME2 LINE L1 -644 5520 5450 192 40 0 0 chr1 105280524 105280549 -137383804 + (A)n Simple_repeat Simple_repeat 1 25 0 1805 143 184 8 chr1 105281244 105281430 -137382923 - MSTA LTR MaLR 0 428 276 468 48 0 0 chr1 105281430 105281493 -137382860 + (GA)n Simple_repeat Simple_repeat 1 63 0 1805 143 184 8 chr1 105281493 105281670 -137382683 - MSTA LTR MaLR -152 276 1 255 219 41 0 chr1 105282114 105282187 -137382166 + T-rich Low_complexity Low_complexity 4 79 0 236 287 124 16 chr1 105282396 105282525 -137381828 - MIR3 SINE MIR -6 202 60 2168 130 3 0 chr1 105282667 105282974 -137381379 - AluSx SINE Alu -4 308 1 1357 316 80 10 chr1 105283308 105283823 -137380530 - L3 LINE CR1 -1 1576 1026 209 188 0 145 chr1 105284720 105284789 -137379564 + L2 LINE L2 3251 3309 -4 207 271 34 0 chr1 105287023 105287082 -137377271 - MIR SINE MIR -132 130 70 1363 199 31 93 chr1 105287205 105287592 -137376761 - MLT1A1 LTR MaLR -2 363 1 14746 166 22 22 chr1 105287738 105289313 -137375040 + L1MA5A LINE L1 2128 3702 -2595 459 35 0 0 chr1 105289313 105289370 -137374983 + (GA)n Simple_repeat Simple_repeat 2 58 0 14746 166 22 22 chr1 105289370 105291958 -137372395 + L1MA5A LINE L1 3702 6291 -6 1411 209 38 35 chr1 105292778 105293035 -137371318 - MER58B DNA MER1_type -2079 341 81 2178 112 3 7 chr1 105293035 105293340 -137371013 + AluSx SINE Alu 1 304 -8 1411 209 38 35 chr1 105293340 105293421 -137370932 - MER58B DNA MER1_type -2339 81 2 432 332 89 5 chr1 105293426 105293628 -137370725 + MIR SINE MIR 31 249 -13 1804 73 5 0 chr1 105293807 105294027 -137370326 + AluSp SINE Alu 1 221 -92 388 254 26 35 chr1 105294060 105294174 -137370179 - MIR SINE MIR -65 197 85 359 297 59 89 chr1 105294221 105294659 -137369694 + MLT1K LTR MaLR 69 493 -95 707 248 43 47 chr1 105294978 105295420 -137368933 + LTR33 LTR ERVL 5 520 -1 441 301 46 13 chr1 105295429 105295661 -137368692 - L1MC/D LINE L1 -836 5464 5285 410 279 134 11 chr1 105295662 105295924 -137368429 - L1MC/D LINE L1 -1753 4393 4100 287 152 0 0 chr1 105296165 105296211 -137368142 - MER103 DNA DNA -48 118 73 360 0 0 0 chr1 105296608 105296648 -137367705 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 271 43 0 chr1 105296729 105296799 -137367554 + CT-rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr1 105298627 105298649 -137365704 + AT_rich Low_complexity Low_complexity 1 22 0 191 263 123 0 chr1 105300242 105300299 -137364054 + MIR SINE MIR 49 112 -150 188 164 18 109 chr1 105300463 105300518 -137363835 - MIR SINE MIR -60 148 99 22 0 0 0 chr1 105300535 105300557 -137363796 + AT_rich Low_complexity Low_complexity 1 22 0 190 338 52 32 chr1 105300714 105300868 -137363485 + L2 LINE L2 1751 1907 -1407 698 300 63 4 chr1 105301100 105301337 -137363016 - MIR SINE MIR -10 252 2 214 264 154 0 chr1 105301510 105301601 -137362752 + MIR SINE MIR 63 167 -95 235 184 0 20 chr1 105302084 105302133 -137362220 - L2 LINE L2 -5 3308 3261 268 232 111 20 chr1 105302147 105302246 -137362107 + MER117 DNA MER1_type 12 119 -78 1517 201 99 2 chr1 105303892 105304294 -137360059 + Charlie4a DNA MER1_type 20 460 -48 337 308 56 0 chr1 105304490 105304597 -137359756 + L2 LINE L2 3199 3311 -2 218 204 19 0 chr1 105304921 105304975 -137359378 + (TG)n Simple_repeat Simple_repeat 2 56 0 272 289 60 0 chr1 105305003 105305086 -137359267 - MIR3 SINE MIR -21 187 100 * 281 250 43 11 chr1 105305085 105305177 -137359176 + L2 LINE L2 1897 1991 -1323 214 304 29 39 chr1 105305162 105305264 -137359089 + L2 LINE L2 2914 3014 -258 * 947 157 32 85 chr1 105305322 105305570 -137358783 - MER106A DNA MER1_type -1 235 1 471 347 58 58 chr1 105306129 105306397 -137357956 + L2 LINE L2 2910 3180 -92 594 112 61 178 chr1 105306397 105306611 -137357742 + MER53 DNA DNA 1 189 0 471 347 58 58 chr1 105306611 105306705 -137357648 + L2 LINE L2 3179 3272 0 600 241 58 11 chr1 105306706 105306880 -137357473 - L2 LINE L2 -50 3263 3082 * 1892 286 30 56 chr1 105306877 105307401 -137356952 + L2 LINE L2 2355 2836 -477 435 241 9 26 chr1 105307401 105307517 -137356836 - MER81 DNA DNA 0 114 1 1892 286 30 56 chr1 105307517 105307983 -137356370 + L2 LINE L2 2836 3312 -1 1363 281 51 24 chr1 105308055 105308587 -137355766 - L2 LINE L2 -312 3001 2456 289 268 0 0 chr1 105308606 105308677 -137355676 - L1ME3A LINE L1 -5 6165 6095 42835 31 22 1 chr1 105308689 105314710 -137349643 - L1PA3 LINE L1 0 6155 5 365 270 20 40 chr1 105314707 105314855 -137349498 - L1ME3A LINE L1 -63 6107 5963 * 1392 218 247 29 chr1 105314852 105315582 -137348771 - L1MCc LINE L1 -3143 3798 2910 979 274 149 27 chr1 105315592 105316700 -137347653 - L1MCc LINE L1 -4343 2779 1278 697 270 56 34 chr1 105316796 105317029 -137347324 + MIR SINE MIR 20 257 -5 1836 131 11 21 chr1 105317035 105317317 -137347036 - AluJo SINE Alu -13 299 21 38 22 0 0 chr1 105318617 105318662 -137345691 + AT_rich Low_complexity Low_complexity 1 45 0 240 365 19 10 chr1 105319367 105319471 -137344882 + L2 LINE L2 3160 3264 -8 1386 125 4 8 chr1 105320122 105320362 -137343991 - L1MB3 LINE L1 -1 6182 5944 1811 163 26 16 chr1 105321483 105321790 -137342563 + AluJb SINE Alu 1 310 -2 212 273 0 0 chr1 105322903 105322947 -137341406 + L2 LINE L2 3266 3309 -4 405 214 57 79 chr1 105323047 105323187 -137341166 + MIR SINE MIR 16 152 -56 213 190 86 17 chr1 105323341 105323399 -137340954 + MIR3 SINE MIR 131 192 -16 236 355 40 61 chr1 105323495 105323872 -137340481 + L2 LINE L2 2364 2732 -582 418 353 65 70 chr1 105323898 105324314 -137340039 + L2 LINE L2 2841 3254 -18 233 222 37 19 chr1 105324781 105324835 -137339518 - MER91A DNA MER1_type -2 188 134 227 248 354 0 chr1 105324876 105324989 -137339364 - MER91A DNA MER1_type -20 176 24 540 149 9 19 chr1 105326629 105326736 -137337617 + L1MA8 LINE L1 6183 6288 -3 198 71 0 0 chr1 105328772 105328800 -137335553 + (TC)n Simple_repeat Simple_repeat 2 29 0 325 325 94 8 chr1 105331323 105331440 -137332913 - L2 LINE L2 -5 3267 3141 216 0 0 0 chr1 105331508 105331532 -137332821 + (CAA)n Simple_repeat Simple_repeat 1 24 0 361 241 215 13 chr1 105331537 105331695 -137332658 - MIR SINE MIR 0 262 73 587 265 41 110 chr1 105331705 105332097 -137332256 + L2 LINE L2 2512 2866 -448 1141 216 18 0 chr1 105332097 105332315 -137332038 - MER58A DNA MER1_type -2 222 1 587 265 41 110 chr1 105332315 105332405 -137331948 + L2 LINE L2 2866 2961 -353 387 316 55 43 chr1 105332444 105332700 -137331653 + L2 LINE L2 3050 3308 -5 604 251 185 5 chr1 105333372 105333567 -137330786 - MIR SINE MIR -19 243 14 232 135 39 19 chr1 105336005 105336057 -137328296 + GA-rich Low_complexity Low_complexity 3 55 0 204 125 0 0 chr1 105336472 105336504 -137327849 + (T)n Simple_repeat Simple_repeat 1 32 0 332 200 50 10 chr1 105336550 105336650 -137327703 + MER113 DNA MER1_type? 5 108 -413 23 0 0 0 chr1 105337373 105337396 -137326957 + AT_rich Low_complexity Low_complexity 1 23 0 298 311 37 25 chr1 105339258 105339377 -137324976 - MIR SINE MIR -52 156 35 225 264 35 58 chr1 105340022 105340109 -137324244 - L2 LINE L2 0 3313 3229 385 249 249 5 chr1 105340369 105340578 -137323775 + MIR SINE MIR 1 260 -2 365 308 25 8 chr1 105341589 105341709 -137322644 - MER5A DNA MER1_type -6 183 62 23 0 0 0 chr1 105343287 105343310 -137321043 + AT_rich Low_complexity Low_complexity 1 23 0 4292 87 68 2 chr1 105343310 105343668 -137320685 - L1PB1 LINE L1 -1 6150 5732 234 0 0 0 chr1 105343668 105343694 -137320659 + (TA)n Simple_repeat Simple_repeat 2 27 0 4292 87 68 2 chr1 105343694 105343956 -137320397 - L1PB1 LINE L1 -419 5732 5489 624 141 0 0 chr1 105343956 105344055 -137320298 + L1PB1 LINE L1 5386 5484 -667 615 314 50 36 chr1 105344188 105344631 -137319722 + HAL1b LINE L1 69 517 -831 1018 165 71 107 chr1 105344770 105345237 -137319116 - L1MC5 LINE L1 -35 7926 7477 4731 166 34 35 chr1 105345245 105345269 -137319084 - L1MB2 LINE L1 -2 6169 6146 1852 201 23 25 chr1 105345269 105345666 -137318687 - MSTD LTR MaLR 0 396 1 4731 166 34 35 chr1 105345666 105346871 -137317482 - L1MB2 LINE L1 -25 6146 4942 272 200 0 14 chr1 105346891 105346961 -137317392 + HAL1b LINE L1 711 779 -569 304 285 119 7 chr1 105347536 105347687 -137316666 + L1M4 LINE L1 2235 2402 -3744 1612 233 65 26 chr1 105347694 105348037 -137316316 - MLT1G LTR MaLR -1 589 226 2018 132 16 13 chr1 105348037 105348348 -137316005 - AluSx SINE Alu 0 312 1 1612 233 65 26 chr1 105348348 105348421 -137315932 - MLT1G LTR MaLR -364 226 157 1846 121 57 51 chr1 105348427 105348586 -137315767 + THE1C LTR MaLR 2 159 -216 2045 123 31 0 chr1 105348586 105348879 -137315474 - AluSg SINE Alu -8 302 1 1846 121 57 51 chr1 105348879 105349091 -137315262 + THE1C LTR MaLR 159 375 0 663 221 0 7 chr1 105349093 105349229 -137315124 - MLT1A1 LTR MaLR -1 364 230 511 235 0 0 chr1 105349230 105349332 -137315021 + MLT-int LTR MaLR 430 531 -1204 676 161 15 8 chr1 105349907 105350037 -137314316 + MLT-int LTR MaLR 526 656 -1079 2183 145 14 43 chr1 105350037 105350384 -137313969 - MLT1A1-int LTR MaLR -1332 403 68 1954 91 8 4 chr1 105350384 105350649 -137313704 - AluSc SINE Alu -2 307 42 2183 145 14 43 chr1 105350649 105350716 -137313637 - MLT1A1-int LTR MaLR -1667 68 1 2133 179 6 3 chr1 105350717 105351075 -137313278 - MLT1A1 LTR MaLR -1 364 6 634 195 38 44 chr1 105351075 105351234 -137313119 - MLT1A1 LTR MaLR -432 158 1 784 316 143 47 chr1 105351288 105351879 -137312474 + L1M4 LINE L1 3959 4492 -1654 1962 150 0 7 chr1 105351879 105352179 -137312174 + AluJb SINE Alu 1 298 -14 784 316 143 47 chr1 105352179 105352587 -137311766 + L1M4 LINE L1 4492 5054 -1092 447 315 64 34 chr1 105353982 105354280 -137310073 - L2 LINE L2 -712 2602 2296 182 333 0 0 chr1 105354336 105354387 -137309966 + L2 LINE L2 2184 2234 -1080 665 310 39 39 chr1 105354387 105354406 -137309947 + MLT1I LTR MaLR 1 19 -390 2087 143 33 33 chr1 105354406 105354770 -137309583 + THE1B LTR MaLR 1 364 0 665 310 39 39 chr1 105354770 105355034 -137309319 + MLT1I LTR MaLR 18 284 -125 395 240 0 0 chr1 105355090 105355190 -137309163 - L1P LINE L1 -963 5183 5084 1457 167 4 4 chr1 105355190 105355465 -137308888 - Tigger2 DNA MER2_type -2443 275 1 520 317 43 22 chr1 105355605 105355835 -137308518 + MIR SINE MIR 15 249 -13 233 296 70 64 chr1 105406650 105406822 -137257531 - MLT1K LTR MaLR -400 188 16 2280 113 0 0 chr1 105408164 105408455 -137255898 + AluSx SINE Alu 1 291 -21 1126 246 72 28 chr1 105408735 105409097 -137255256 - MLT1B LTR MaLR -12 378 1 333 235 15 0 chr1 105409097 105409165 -137255188 + MIR SINE MIR 90 158 -104 184 323 131 30 chr1 105409239 105409338 -137255015 + MIR SINE MIR 154 262 0 266 312 163 17 chr1 105409998 105410293 -137254060 - L2 LINE L2 -653 2661 2324 5465 159 20 7 chr1 105411780 105413001 -137251352 - L1MA7 LINE L1 0 6291 5059 522 339 75 8 chr1 105414208 105414447 -137249906 - MIR SINE MIR -6 256 2 225 253 21 21 chr1 105415164 105415259 -137249094 - L1MEc LINE L1 -4734 1662 1568 541 315 27 10 chr1 105415305 105415603 -137248750 - L1MEc LINE L1 -4916 1289 987 1761 228 55 47 chr1 105415684 105416262 -137248091 - L1ME1 LINE L1 -6 6229 5647 361 250 24 16 chr1 105416269 105416393 -137247960 - L1ME1 LINE L1 -1805 4410 4286 857 264 18 43 chr1 105416402 105416685 -137247668 - L1ME1 LINE L1 -2467 3748 3473 1942 176 0 0 chr1 105416685 105416986 -137247367 + AluJb SINE Alu 1 301 -11 857 264 18 43 chr1 105416986 105417028 -137247325 - L1ME1 LINE L1 -2742 3473 3431 505 256 34 34 chr1 105417048 105417224 -137247129 - L1ME1 LINE L1 -4307 2089 1914 282 349 94 73 chr1 105417423 105417615 -137246738 - L2 LINE L2 -100 3172 2977 22 0 0 0 chr1 105418132 105418154 -137246199 + AT_rich Low_complexity Low_complexity 1 22 0 209 237 34 0 chr1 105419062 105419121 -137245232 + (TATG)n Simple_repeat Simple_repeat 4 64 0 411 147 53 7 chr1 105420063 105420213 -137244140 + (TA)n Simple_repeat Simple_repeat 2 158 0 21 0 0 0 chr1 105420219 105420240 -137244113 + AT_rich Low_complexity Low_complexity 1 21 0 380 157 45 8 chr1 105420260 105420394 -137243959 + (TA)n Simple_repeat Simple_repeat 2 140 0 301 253 11 22 chr1 105420485 105420576 -137243777 - L1MC4 LINE L1 -1339 6703 6614 277 340 94 60 chr1 105421611 105422026 -137242327 + L2 LINE L2 1863 2291 -1023 207 309 0 0 chr1 105422263 105422318 -137242035 + CT-rich Low_complexity Low_complexity 2 56 0 2223 218 71 46 chr1 105422580 105423858 -137240495 + L1MC4 LINE L1 6450 7698 -110 206 275 0 14 chr1 105424258 105424327 -137240026 + CT-rich Low_complexity Low_complexity 1 68 0 772 290 88 22 chr1 105424835 105425290 -137239063 - L1ME4a LINE L1 -102 6019 5535 366 217 36 0 chr1 105425305 105425388 -137238965 - L1ME3 LINE L1 0 6162 6077 1958 146 144 5 chr1 105425392 105425768 -137238585 + MSTA LTR MaLR 1 428 0 9092 151 6 41 chr1 105425770 105427405 -137236948 + MSTA-int LTR MaLR 3 1580 0 2032 148 134 0 chr1 105427405 105427778 -137236575 + MSTA LTR MaLR 1 423 -5 1429 284 68 8 chr1 105427779 105428308 -137236045 - L1ME3 LINE L1 -88 6074 5514 4073 150 20 4 chr1 105428308 105429008 -137235345 - MER50 LTR ERV1 -23 711 1 216 359 0 13 chr1 105429162 105429240 -137235113 - L2 LINE L2 -4 3309 3233 727 300 68 14 chr1 105429409 105429629 -137234724 - MIR SINE MIR 0 262 31 180 152 0 0 chr1 105431915 105431948 -137232405 + A-rich Low_complexity Low_complexity 1 33 0 2419 179 19 25 chr1 105432682 105433200 -137231153 - MER34B LTR ERV1 0 565 51 1643 177 92 44 chr1 105433200 105433636 -137230717 - LTR2B LTR ERV1 0 490 34 438 119 0 0 chr1 105433655 105433728 -137230625 - MER34C LTR ERV1 -472 93 1 276 261 26 124 chr1 105434294 105434447 -137229906 - L2 LINE L2 -3 3310 3173 21 0 0 0 chr1 105435554 105435575 -137228778 + AT_rich Low_complexity Low_complexity 1 21 0 2813 150 46 8 chr1 105435599 105436193 -137228160 + MER39 LTR ERV1 19 707 0 927 216 35 94 chr1 105436231 105436634 -137227719 + LTR37B LTR ERV1 90 468 0 225 205 13 39 chr1 105436921 105436999 -137227354 + (TA)n Simple_repeat Simple_repeat 2 77 0 1914 180 115 22 chr1 105437267 105437352 -137227001 - MLT1D LTR MaLR 0 505 429 939 64 41 177 chr1 105437352 105437572 -137226781 - MER30B DNA MER1_type 0 190 1 1914 180 115 22 chr1 105437572 105437948 -137226405 - MLT1D LTR MaLR -76 429 1 501 275 126 0 chr1 105438010 105438177 -137226176 - MER5A DNA MER1_type -1 188 1 24 32 0 0 chr1 105438270 105438301 -137226052 + AT_rich Low_complexity Low_complexity 1 31 0 450 270 38 87 chr1 105438419 105438540 -137225813 + MIR SINE MIR 87 197 -65 2320 97 0 0 chr1 105438540 105438840 -137225513 + AluY SINE Alu 2 301 -10 450 270 38 87 chr1 105438840 105438903 -137225450 + MIR SINE MIR 197 262 0 2783 82 3 6 chr1 105440191 105440556 -137223797 - THE1B LTR MaLR 0 364 1 250 211 69 4 chr1 105440572 105440646 -137223707 - MIR SINE MIR -66 142 69 2057 137 0 0 chr1 105440666 105440979 -137223374 + AluSx SINE Alu 1 313 0 825 117 0 0 chr1 105442108 105442236 -137222117 + (TTCC)n Simple_repeat Simple_repeat 1 128 0 319 317 126 52 chr1 105442240 105442888 -137221465 - L2 LINE L2 -17 3296 2581 1954 194 117 31 chr1 105442888 105443367 -137220986 + MLT2B1 LTR ERVL 1 520 0 319 317 126 52 chr1 105443367 105443472 -137220881 - L2 LINE L2 -732 2581 2485 414 169 48 0 chr1 105443630 105443713 -137220640 + Tigger5 DNA MER2_type 2237 2323 0 22 35 0 0 chr1 105444188 105444217 -137220136 + AT_rich Low_complexity Low_complexity 1 29 0 323 284 20 0 chr1 105444852 105444954 -137219399 - MER5A DNA MER1_type -77 112 9 547 232 42 7 chr1 105445105 105445247 -137219106 + MIR SINE MIR 31 177 -85 333 0 0 0 chr1 105446090 105446127 -137218226 + (TG)n Simple_repeat Simple_repeat 1 37 0 216 0 0 0 chr1 105446531 105446555 -137217798 + (CA)n Simple_repeat Simple_repeat 2 25 0 242 281 182 8 chr1 105446865 105446986 -137217367 - MIR SINE MIR -12 250 109 2249 151 42 53 chr1 105447122 105447513 -137216840 - MSTB LTR MaLR 0 426 39 2105 123 17 0 chr1 105447513 105447813 -137216540 + AluSx SINE Alu 1 305 -7 2249 151 42 53 chr1 105447813 105447852 -137216501 - MSTB LTR MaLR -387 39 1 319 248 119 0 chr1 105448203 105448304 -137216049 - MER81 DNA DNA 0 114 2 320 153 47 71 chr1 105448415 105448500 -137215853 + LTR16A1 LTR ERVL 375 457 0 * 772 257 171 18 chr1 105448500 105448935 -137215418 - LTR33A LTR ERVL -11 512 11 182 331 105 38 chr1 105449128 105449261 -137215092 + L2 LINE L2 3121 3262 -10 413 265 130 48 chr1 105449761 105449991 -137214362 + MIR SINE MIR 14 262 0 258 276 64 90 chr1 105451320 105451439 -137212914 + MIR SINE MIR 6 122 -140 1870 234 91 20 chr1 105451439 105451943 -137212410 + MLT1F LTR MaLR 1 540 -2 258 276 64 90 chr1 105451943 105451979 -137212374 + MIR SINE MIR 122 157 -105 1441 209 79 6 chr1 105451989 105452329 -137212024 + MLT1A1 LTR MaLR 1 365 0 1808 111 12 8 chr1 105454414 105454666 -137209687 + AluSg SINE Alu 38 290 -20 1785 99 25 4 chr1 105454669 105454912 -137209441 + AluSc SINE Alu 49 296 -13 1405 240 130 30 chr1 105455655 105455958 -137208395 - L1ME3A LINE L1 -62 6108 5837 1525 154 29 6 chr1 105455958 105456270 -137208083 + MER33 DNA MER1_type 5 323 -1 1405 240 130 30 chr1 105456270 105456590 -137207763 - L1ME3A LINE L1 -333 5837 5423 1376 158 17 30 chr1 105456590 105456668 -137207685 + AluJo SINE Alu 52 129 -186 180 0 0 0 chr1 105456668 105456688 -137207665 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1376 158 17 30 chr1 105456688 105456876 -137207477 + AluJo SINE Alu 129 315 0 1221 239 68 26 chr1 105456894 105457468 -137206885 - L1ME3A LINE L1 -1425 4721 4124 1262 229 25 17 chr1 105458005 105458192 -137206161 + MLT1A1 LTR MaLR 1 194 -171 2666 205 92 19 chr1 105458192 105458875 -137205478 + MER44D DNA MER2_type 1 605 0 1262 229 25 17 chr1 105458875 105459041 -137205312 + MLT1A1 LTR MaLR 194 357 -8 257 321 101 43 chr1 105460448 105460725 -137203628 + L2 LINE L2 3017 3309 -4 298 233 0 0 chr1 105461202 105461275 -137203078 + GA-rich Low_complexity Low_complexity 1 73 0 555 263 90 83 chr1 105461394 105461571 -137202782 + L2 LINE L2 3012 3193 -120 1729 115 7 7 chr1 105461571 105461866 -137202487 - L1MA4A LINE L1 -7 6296 6002 555 263 90 83 chr1 105461866 105461988 -137202365 + L2 LINE L2 3193 3313 0 22 0 0 0 chr1 105462013 105462035 -137202318 + AT_rich Low_complexity Low_complexity 1 22 0 2022 180 9 28 chr1 105462149 105462583 -137201770 - L1MB8 LINE L1 -6 6172 5747 287 160 0 0 chr1 105462592 105462642 -137201711 - MLT1L LTR MaLR -415 200 151 22 0 0 0 chr1 105462858 105462880 -137201473 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr1 105464852 105464888 -137199465 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr1 105465945 105465979 -137198374 + AT_rich Low_complexity Low_complexity 1 34 0 4728 147 68 8 chr1 105466175 105467783 -137196570 - L1MA4 LINE L1 -23 7696 5985 606 277 132 0 chr1 105468228 105468441 -137195912 - MIR SINE MIR -2 260 20 2017 111 10 0 chr1 105468752 105469058 -137195295 - L1MA3 LINE L1 0 6305 5997 19900 148 28 3 chr1 105469064 105472435 -137191918 - L1MA4 LINE L1 -4100 3465 12 228 135 0 0 chr1 105472781 105472818 -137191535 + (CA)n Simple_repeat Simple_repeat 2 38 0 259 167 46 37 chr1 105472821 105472915 -137191438 + (TA)n Simple_repeat Simple_repeat 2 99 -11 748 168 28 0 chr1 105472915 105473058 -137191295 - L1MC1 LINE L1 -6 6327 6181 259 167 46 37 chr1 105473058 105473071 -137191282 + (TA)n Simple_repeat Simple_repeat 99 110 0 25 0 0 0 chr1 105473960 105473985 -137190368 + AT_rich Low_complexity Low_complexity 1 25 0 896 125 31 0 chr1 105473998 105474126 -137190227 - AluSp/q SINE Alu -19 294 163 537 77 13 0 chr1 105475633 105475711 -137188642 + MADE1 DNA Mariner 2 80 0 266 348 187 23 chr1 105475814 105476162 -137188191 - L2 LINE L2 -5 3267 2863 395 264 149 0 chr1 105476733 105476907 -137187446 - HAL1 LINE L1 -607 1900 1701 464 224 106 102 chr1 105477140 105477386 -137186967 + LTR33A LTR ERVL 12 258 -265 351 227 174 8 chr1 105477508 105477640 -137186713 + MER106B DNA MER1_type 902 1055 -4 1304 191 154 22 chr1 105477991 105478394 -137185959 - LTR48 LTR ERV1 0 787 332 18741 80 7 1 chr1 105478356 105481736 -137182617 + L1PA7 LINE L1 2741 6150 -4 1839 167 36 9 chr1 105482120 105482456 -137181897 - LTR48 LTR ERV1 -442 345 1 281 234 37 19 chr1 105482458 105482565 -137181788 - L1M1 LINE L1 -502 5803 5695 276 330 33 0 chr1 105482703 105482915 -137181438 - L1ME LINE L1 -689 5481 5263 1047 255 132 45 chr1 105483486 105484267 -137180086 - HAL1 LINE L1 -847 1660 812 545 306 90 35 chr1 105484795 105485105 -137179248 - LTR33 LTR ERVL -192 329 3 1708 219 19 22 chr1 105485229 105485595 -137178758 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr1 105486672 105486693 -137177660 + AT_rich Low_complexity Low_complexity 1 21 0 19046 151 32 38 chr1 105486693 105490130 -137174223 - L1MA2 LINE L1 0 7723 4265 751 194 0 0 chr1 105490130 105490254 -137174099 - FLAM_C SINE Alu -17 126 3 19046 151 32 38 chr1 105490254 105494459 -137169894 - L1MA2 LINE L1 -3458 4265 19 472 317 96 34 chr1 105494478 105494863 -137169490 - L1M4 LINE L1 -2846 3300 2892 202 154 103 0 chr1 105495264 105495303 -137169050 + L2 LINE L2 3190 3232 -81 219 114 0 0 chr1 105495977 105496012 -137168341 + (CAA)n Simple_repeat Simple_repeat 2 36 0 784 265 91 9 chr1 105496023 105496253 -137168100 - MIR SINE MIR -12 250 2 439 324 45 34 chr1 105496337 105496516 -137167837 - MIR3 SINE MIR -9 199 19 317 313 30 0 chr1 105496692 105496791 -137167562 - MIR SINE MIR -111 151 50 1990 126 30 54 chr1 105499555 105499928 -137164425 + THE1B LTR MaLR 1 364 0 11071 95 31 15 chr1 105499928 105501483 -137162870 + THE1B-int LTR MaLR 1 1580 0 2109 133 13 45 chr1 105501483 105501859 -137162494 + THE1B LTR MaLR 1 364 0 2294 104 0 3 chr1 105502303 105502601 -137161752 - AluY SINE Alu -14 297 1 21 36 0 0 chr1 105502892 105502920 -137161433 + AT_rich Low_complexity Low_complexity 1 28 0 372 43 0 0 chr1 105502922 105502968 -137161385 + (CA)n Simple_repeat Simple_repeat 2 47 0 293 250 95 108 chr1 105503529 105503761 -137160592 + L2 LINE L2 3075 3303 -10 443 209 12 193 chr1 105503771 105504025 -137160328 + MIR SINE MIR 2 209 -53 24144 143 22 10 chr1 105505329 105506552 -137157801 + L1PA8 LINE L1 8 1215 -5272 210 91 0 0 chr1 105506552 105506585 -137157768 + (CAA)n Simple_repeat Simple_repeat 1 33 0 24144 143 22 10 chr1 105506585 105511696 -137152657 + L1PA8 LINE L1 1215 6485 -2 295 333 16 0 chr1 105511910 105512033 -137152320 + CT-rich Low_complexity Low_complexity 2 126 0 2460 300 114 27 chr1 105512621 105513810 -137150543 - L2 LINE L2 0 3313 1969 2088 151 53 6 chr1 105513810 105514168 -137150185 - THE1C LTR MaLR 0 375 1 2460 300 114 27 chr1 105514168 105514463 -137149890 - L2 LINE L2 -1344 1969 1701 22 0 0 0 chr1 105515077 105515099 -137149254 + AT_rich Low_complexity Low_complexity 1 22 0 746 272 40 35 chr1 105515984 105516212 -137148141 - MIR SINE MIR -21 241 13 344 87 0 5 chr1 105516249 105516306 -137148047 - L1PA7 LINE L1 -213 5961 5907 1336 48 6 0 chr1 105516306 105516467 -137147886 + L1PA7 LINE L1 5981 6146 -8 580 309 126 16 chr1 105516477 105516969 -137147384 - L1MC4a LINE L1 -1967 5841 5296 202 216 0 0 chr1 105517293 105517344 -137147009 + (TTTA)n Simple_repeat Simple_repeat 4 54 0 542 286 35 35 chr1 105567397 105567715 -137096638 + HAL1 LINE L1 1367 1684 -823 356 287 61 37 chr1 105567749 105567913 -137096440 + HAL1 LINE L1 2057 2224 -283 3667 45 4 0 chr1 105567934 105568417 -137095936 + L1P LINE L1 3411 3895 -2251 1081 178 13 13 chr1 105568521 105568752 -137095601 + L1MB8 LINE L1 5948 6178 0 433 222 0 0 chr1 105569708 105569798 -137094555 - Tigger5 DNA MER2_type 0 2323 2234 1569 203 14 3 chr1 105570950 105571309 -137093044 + L1M4c LINE L1 1424 1786 -4598 2771 23 0 0 chr1 105571309 105571619 -137092734 + AluY SINE Alu 1 310 -1 282 352 63 21 chr1 105571937 105572079 -137092274 - MIR3 SINE MIR -47 161 14 600 263 223 3 chr1 105574391 105574710 -137089643 + LTR16C LTR ERVL 89 477 -14 282 316 112 66 chr1 105574824 105575020 -137089333 - L3 LINE CR1 -278 1299 1095 21 0 0 0 chr1 105575332 105575353 -137089000 + AT_rich Low_complexity Low_complexity 1 21 0 350 74 19 0 chr1 105577944 105577998 -137086355 + (TC)n Simple_repeat Simple_repeat 2 56 0 195 42 0 0 chr1 105577998 105578022 -137086331 + (CA)n Simple_repeat Simple_repeat 1 24 0 1108 166 65 23 chr1 105578716 105579023 -137085330 - MER33 DNA MER1_type 0 324 5 274 289 55 70 chr1 105580311 105580439 -137083914 + L2 LINE L2 3187 3312 -1 199 328 69 17 chr1 105580792 105580908 -137083445 - L3 LINE CR1 -247 1330 1209 280 281 59 67 chr1 105581156 105581291 -137083062 + MER5A DNA MER1_type 56 189 0 403 273 117 8 chr1 105581920 105582048 -137082305 - L2 LINE L2 -5 3308 3167 2023 185 8 3 chr1 105582984 105583347 -137081006 - MLT1A1 LTR MaLR 0 365 1 4438 215 84 39 chr1 105583347 105584424 -137079929 - MLT1A1-int LTR MaLR 0 1735 610 772 202 167 89 chr1 105584434 105584498 -137079855 + MLT1A1 LTR MaLR 4 62 -303 2398 170 22 22 chr1 105584498 105584958 -137079395 + LOR1b LTR ERV1 2 461 0 772 202 167 89 chr1 105584958 105585229 -137079124 + MLT1A1 LTR MaLR 62 365 0 2964 211 20 0 chr1 105585230 105585826 -137078527 - MLT1A1-int LTR MaLR -1127 608 1 1338 229 81 23 chr1 105585826 105586171 -137078182 - MLT1A1 LTR MaLR 0 365 1 1836 139 53 39 chr1 105586271 105586630 -137077723 - THE1B LTR MaLR 0 364 1 195 129 0 0 chr1 105587090 105587121 -137077232 + (A)n Simple_repeat Simple_repeat 1 31 0 824 218 59 23 chr1 105587171 105587490 -137076863 + MSTD LTR MaLR 1 394 -2 393 193 34 23 chr1 105587490 105587557 -137076796 + MSTB2 LTR MaLR 390 457 0 1723 216 37 16 chr1 105587772 105588282 -137076071 - L1M4c LINE L1 -3941 2443 1923 2294 109 88 8 chr1 105588396 105588814 -137075539 - LTR12 LTR ERV1 -283 2155 57 236 289 0 0 chr1 105588814 105588866 -137075487 - LTR30 LTR ERV1 -670 52 1 693 188 60 0 chr1 105589045 105589178 -137075175 + MER58B DNA MER1_type 197 337 -4 918 342 72 20 chr1 105589262 105589750 -137074603 - MLT1K LTR MaLR -74 514 2 244 213 49 0 chr1 105589934 105589995 -137074358 - L1M3 LINE L1 -726 5445 5382 2229 113 0 10 chr1 105590017 105590317 -137074036 - AluSc SINE Alu -12 297 1 2321 202 61 75 chr1 105590821 105591523 -137072830 + L1MA9 LINE L1 5621 6312 0 23 68 0 0 chr1 105591644 105591688 -137072665 + AT_rich Low_complexity Low_complexity 1 44 0 1117 127 7 0 chr1 105592368 105592635 -137071718 - L1PA16 LINE L1 -9 6157 5840 612 250 36 6 chr1 105592890 105593058 -137071295 - MIR SINE MIR -59 203 31 182 234 187 37 chr1 105593105 105593212 -137071141 + L2 LINE L2 446 568 -2746 396 291 123 18 chr1 105593307 105593534 -137070819 - L3b LINE CR1 -229 1354 1104 34 65 0 0 chr1 105594800 105594862 -137069491 + AT_rich Low_complexity Low_complexity 1 62 0 456 344 117 9 chr1 105594941 105595267 -137069086 + L1MC4a LINE L1 5506 5866 -1942 823 231 9 9 chr1 105595289 105595518 -137068835 - HAL1 LINE L1 -401 2106 1878 381 327 9 0 chr1 105595527 105595634 -137068719 - HAL1 LINE L1 -1661 846 739 1721 177 5 96 chr1 105596441 105596870 -137067483 + MLT1B LTR MaLR 1 390 0 563 327 142 31 chr1 105598386 105598997 -137065356 + L2 LINE L2 2069 2747 -567 478 297 97 88 chr1 105599586 105599997 -137064356 + L2 LINE L2 2841 3255 -17 202 132 26 0 chr1 105600426 105600464 -137063889 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 212 217 24 36 chr1 105600714 105600797 -137063556 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 788 264 113 55 chr1 105600880 105601225 -137063128 - MLT1I LTR MaLR -40 369 5 408 246 8 63 chr1 105601995 105602121 -137062232 + MIR SINE MIR 118 236 -26 401 219 90 109 chr1 105602274 105602530 -137061823 - MER112 DNA MER1_type -2 254 4 1131 261 132 27 chr1 105603284 105603762 -137060591 + L2 LINE L2 361 888 -2426 1218 253 89 34 chr1 105604801 105605216 -137059137 + MLT1J1 LTR MaLR 9 446 0 697 309 98 32 chr1 105606089 105606556 -137057797 - HAL1 LINE L1 -813 1694 1186 1823 158 11 3 chr1 105606556 105606841 -137057512 - AluJb SINE Alu -25 287 1 697 309 98 32 chr1 105606841 105606903 -137057450 - HAL1 LINE L1 -1321 1186 1130 5553 109 77 29 chr1 105606903 105608021 -137056332 + MER11A LTR ERVK 1 1265 -1 2307 101 7 0 chr1 105608118 105608424 -137055929 - AluSp SINE Alu -5 308 1 343 308 62 43 chr1 105608434 105608642 -137055711 - HAL1 LINE L1 -1432 1075 864 1423 234 125 56 chr1 105609478 105610086 -137054267 - MLT1E1 LTR MaLR -4 650 1 604 290 44 26 chr1 105610088 105610360 -137053993 - LTR16A LTR ERVL -15 435 159 5265 236 66 30 chr1 105613641 105613713 -137050640 - L1ME1 LINE L1 -9 6437 6369 2842 128 14 0 chr1 105613713 105614135 -137050218 - MSTA LTR MaLR 0 428 1 5265 236 66 30 chr1 105614135 105614901 -137049452 - L1ME1 LINE L1 -77 6369 5631 2149 128 3 0 chr1 105614901 105615197 -137049156 - AluSq SINE Alu -16 297 1 5265 236 66 30 chr1 105615197 105616821 -137047532 - L1ME1 LINE L1 -815 5631 3762 273 220 30 10 chr1 105616822 105616922 -137047431 + (TA)n Simple_repeat Simple_repeat 2 103 0 339 252 0 0 chr1 105616925 105617028 -137047325 - L1ME1 LINE L1 -2674 3752 3650 * 540 246 72 42 chr1 105617008 105617375 -137046978 - L1ME1 LINE L1 -4713 1845 1311 695 264 92 41 chr1 105617666 105617961 -137046392 + L2 LINE L2 3004 3313 0 1674 154 77 6 chr1 105618315 105618626 -137045727 - MER1B DNA MER1_type -6 333 1 632 264 0 66 chr1 105618820 105619017 -137045336 - L2 LINE L2 0 3313 3130 2740 10 0 0 chr1 105620135 105620435 -137043918 - AluYa5 SINE Alu -11 300 1 891 317 121 17 chr1 105620614 105621034 -137043319 - L2 LINE L2 0 3313 2850 933 235 5 25 chr1 105621045 105621245 -137043108 - MLT1A1 LTR MaLR -8 357 162 241 276 17 0 chr1 105621252 105621310 -137043043 - MIR3 SINE MIR -21 187 129 400 290 0 0 chr1 105621338 105621431 -137042922 - L2 LINE L2 0 3313 3221 1604 186 13 75 chr1 105621689 105622076 -137042277 + MLT1A1 LTR MaLR 1 363 -2 1034 287 78 14 chr1 105622296 105622655 -137041698 - ERVL LTR ERVL -2979 2785 2404 318 381 32 11 chr1 105623961 105624242 -137040111 - ERVL LTR ERVL -5042 722 436 3050 174 56 9 chr1 105624629 105625163 -137039190 - MLT1F1 LTR MaLR -8 559 1 318 276 112 84 chr1 105625265 105625740 -137038613 - LTR33A LTR ERVL -307 488 1 2098 282 23 61 chr1 105626877 105627951 -137036402 + L2 LINE L2 2284 3313 0 268 242 45 0 chr1 105627979 105628045 -137036308 + MIR3 SINE MIR 129 197 -11 192 271 71 0 chr1 105628702 105628772 -137035581 + L3b LINE CR1 1254 1328 -255 391 211 53 0 chr1 105628779 105628855 -137035498 - L2 LINE L2 0 3313 3234 582 345 72 51 chr1 105628882 105629783 -137034570 - L2 LINE L2 -4 3268 2313 24 0 0 0 chr1 105630306 105630330 -137034023 + AT_rich Low_complexity Low_complexity 1 24 0 225 289 250 0 chr1 105630450 105630554 -137033799 + L2 LINE L2 3143 3272 0 359 299 53 7 chr1 105630636 105630779 -137033574 - MIR SINE MIR -62 146 15 21 0 0 0 chr1 105632215 105632236 -137032117 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr1 105633645 105633695 -137030658 + AT_rich Low_complexity Low_complexity 1 50 0 224 291 13 13 chr1 105634842 105634921 -137029432 + L2 LINE L2 3235 3313 0 432 235 49 10 chr1 105635386 105635488 -137028865 - MER81 DNA DNA 0 114 9 196 231 200 0 chr1 105635785 105635850 -137028503 - MIR SINE MIR -178 84 7 350 319 92 6 chr1 105636607 105636770 -137027583 + MIR SINE MIR 84 260 -2 303 329 152 13 chr1 105636772 105636930 -137027423 + L3 LINE CR1 1345 1524 -53 1414 128 50 0 chr1 105637577 105637796 -137026557 - MER30 DNA MER1_type 0 230 1 805 263 140 3 chr1 105638144 105638501 -137025852 + L1M4 LINE L1 3690 4095 -2051 34 55 0 0 chr1 105638502 105638557 -137025796 + AT_rich Low_complexity Low_complexity 1 55 0 6946 62 6 0 chr1 105638589 105640187 -137024166 + L1PA7 LINE L1 4546 6148 -6 875 269 44 47 chr1 105640697 105640995 -137023358 - LTR33A LTR ERVL -2 521 225 254 265 0 24 chr1 105641021 105641104 -137023249 - LTR33A LTR ERVL -442 81 1 442 337 61 86 chr1 105641839 105642314 -137022039 - L2 LINE L2 0 3272 2810 323 271 12 24 chr1 105642402 105642487 -137021866 - L2 LINE L2 -50 3222 3139 354 369 24 12 chr1 105642645 105642813 -137021540 - L2 LINE L2 -239 3033 2864 25 0 0 0 chr1 105643788 105643813 -137020540 + AT_rich Low_complexity Low_complexity 1 25 0 192 325 133 10 chr1 105644036 105644149 -137020204 + MIR SINE MIR 20 144 -93 3304 226 26 5 chr1 105644219 105645026 -137019327 - L1PA15 LINE L1 -2497 3649 2826 8470 193 66 11 chr1 105645027 105647492 -137016861 + L1PA15 LINE L1 3639 6159 -6 208 269 343 0 chr1 105647493 105647560 -137016793 - L2 LINE L2 -19 3253 3164 419 290 67 85 chr1 105647602 105647826 -137016527 - MIR SINE MIR -12 250 31 24 32 0 0 chr1 105647886 105647917 -137016436 + AT_rich Low_complexity Low_complexity 1 31 0 1781 247 106 17 chr1 105648628 105649280 -137015073 - L1ME3 LINE L1 -112 6050 5341 1875 204 40 78 chr1 105649280 105649805 -137014548 + MLT1D LTR MaLR 1 505 0 5083 168 54 16 chr1 105649907 105650381 -137013972 - L1MA9 LINE L1 0 6312 5857 255 103 0 0 chr1 105650381 105650420 -137013933 + (TG)n Simple_repeat Simple_repeat 2 40 0 5083 168 54 16 chr1 105650420 105651543 -137012810 - L1MA9 LINE L1 -455 5857 4651 2678 268 67 27 chr1 105651529 105652920 -137011433 - L1ME3 LINE L1 -2406 3740 2294 * 1217 263 106 44 chr1 105653105 105653994 -137010359 + HAL1b LINE L1 311 1341 -7 240 289 93 31 chr1 105654534 105654631 -137009722 - MIR SINE MIR -82 180 78 288 0 0 0 chr1 105654986 105655018 -137009335 + (A)n Simple_repeat Simple_repeat 1 32 0 417 259 92 40 chr1 105655987 105656161 -137008192 - MIR SINE MIR -1 261 79 2492 41 0 14 chr1 105656279 105656599 -137007754 - AluY SINE Alu 0 311 2 205 222 93 0 chr1 105658695 105658749 -137005604 - L2 LINE L2 -60 3253 3195 229 326 97 61 chr1 105659108 105659927 -137004426 - L2 LINE L2 -103 3169 2323 2014 157 43 3 chr1 105660290 105660640 -137003713 + MER47A DNA MER2_type 3 366 0 341 286 174 0 chr1 105660887 105661048 -137003305 - MIR SINE MIR -73 189 1 315 0 0 0 chr1 105662216 105662251 -137002102 + (CA)n Simple_repeat Simple_repeat 1 35 0 219 265 0 0 chr1 105663074 105663123 -137001230 + MIR SINE MIR 81 129 -133 440 77 15 0 chr1 105664187 105664252 -137000101 + (TG)n Simple_repeat Simple_repeat 1 66 0 243 267 0 0 chr1 105664976 105665062 -136999291 + CT-rich Low_complexity Low_complexity 4 89 0 251 320 52 0 chr1 105666366 105666463 -136997890 - MLT1L LTR MaLR -2 613 512 317 327 51 32 chr1 105666735 105666891 -136997462 - MLT1K LTR MaLR -412 176 18 372 22 0 0 chr1 105666994 105667039 -136997314 + (CA)n Simple_repeat Simple_repeat 2 46 0 455 237 179 32 chr1 105667493 105667683 -136996670 + L2 LINE L2 3096 3313 0 238 288 17 0 chr1 105669092 105669151 -136995202 - MIR SINE MIR -67 141 82 189 358 25 0 chr1 105670704 105670785 -136993568 + L3 LINE CR1 95 177 -1400 1603 169 110 8 chr1 105671220 105671593 -136992760 - MER74A LTR ERVL -27 531 121 1766 203 11 11 chr1 105671628 105671992 -136992361 + MLT1A1 LTR MaLR 1 364 -1 232 208 278 0 chr1 105672244 105672316 -136992037 + MLT1I LTR MaLR 315 406 -3 225 230 149 14 chr1 105672332 105672406 -136991947 + MIR SINE MIR 176 259 -3 488 294 21 7 chr1 105672648 105672791 -136991562 - MIR SINE MIR -114 148 4 511 284 55 58 chr1 105673218 105673599 -136990754 + MLT1L LTR MaLR 214 593 -22 306 253 118 32 chr1 105673668 105673889 -136990464 - L1ME LINE L1 -333 5788 5549 387 267 34 41 chr1 105674375 105674521 -136989832 - MIR SINE MIR -109 153 9 450 279 91 43 chr1 105674866 105675074 -136989279 + MIR SINE MIR 32 249 -13 3396 73 2 0 chr1 105675086 105675540 -136988813 + L1P5 LINE L1 5333 5787 -364 305 234 45 42 chr1 105675770 105675953 -136988400 + MLT1J2 LTR MaLR 58 237 -172 819 156 0 0 chr1 105676020 105676142 -136988211 - FLAM_C SINE Alu -19 124 3 1047 249 0 4 chr1 105676177 105676402 -136987951 + Charlie1 DNA MER1_type 2 225 -2536 628 170 7 35 chr1 105676400 105676541 -136987812 + Charlie1 DNA MER1_type 2624 2760 -1 * 29 78 0 0 chr1 105677129 105677193 -136987160 + AT_rich Low_complexity Low_complexity 1 64 0 2030 275 126 18 chr1 105677466 105678339 -136986014 - L2 LINE L2 0 3313 2311 2150 160 28 3 chr1 105678339 105678695 -136985658 + MLT1A1 LTR MaLR 1 365 0 2030 275 126 18 chr1 105678695 105678895 -136985458 - L2 LINE L2 -1002 2311 2134 325 224 32 32 chr1 105679306 105679431 -136984922 - L1MB3 LINE L1 -1 6182 6058 * 2132 136 14 19 chr1 105679403 105679628 -136984725 - L1MA4 LINE L1 -288 6012 5788 2488 111 19 5 chr1 105679628 105679998 -136984355 + THE1C LTR MaLR 1 375 0 2132 136 14 19 chr1 105679998 105680133 -136984220 - L1MA4 LINE L1 -512 5788 5654 1075 94 6 6 chr1 105682447 105682607 -136981746 + L1PA8 LINE L1 6012 6171 -1 2531 93 21 8 chr1 105683860 105684235 -136980118 + MLT2A1 LTR ERVL 1 380 -64 292 326 62 8 chr1 105684471 105684600 -136979753 - MIR SINE MIR -70 192 57 260 342 63 0 chr1 105684815 105684894 -136979459 - L2 LINE L2 -33 3280 3197 1109 189 43 8 chr1 105685096 105685350 -136979003 + ORSL DNA AcHobo 1 263 -12 350 330 89 15 chr1 105688474 105688677 -136975676 + L3 LINE CR1 1073 1290 -287 249 287 0 11 chr1 105688719 105688806 -136975547 - MER117 DNA MER1_type -56 141 56 284 314 183 7 chr1 105688864 105689001 -136975352 + L3 LINE CR1 1298 1458 -119 2311 89 33 3 chr1 105689578 105689881 -136974472 + AluSx SINE Alu 1 312 0 195 385 31 21 chr1 105689884 105689980 -136974373 + L3 LINE CR1 1478 1574 -3 183 283 0 33 chr1 105690010 105690070 -136974283 - L3 LINE CR1 -351 1226 1169 457 220 29 58 chr1 105690224 105690311 -136974042 + MER69A DNA AcHobo 1 82 -2444 689 190 5 36 chr1 105690311 105690395 -136973958 + MER53 DNA DNA 1 86 -103 324 0 0 0 chr1 105690395 105690431 -136973922 + (TA)n Simple_repeat Simple_repeat 1 36 0 689 190 5 36 chr1 105690431 105690541 -136973812 + MER53 DNA DNA 86 189 0 457 220 29 58 chr1 105690541 105690626 -136973727 + MER69A DNA AcHobo 82 168 -9 388 256 113 6 chr1 105692154 105692314 -136972039 - MIR SINE MIR -10 252 76 747 277 27 18 chr1 105692538 105692758 -136971595 - MIR SINE MIR -2 260 39 258 211 0 18 chr1 105692803 105692860 -136971493 + MIR SINE MIR 204 259 -3 242 333 89 0 chr1 105692870 105692993 -136971360 - MIR SINE MIR -28 234 101 358 75 4 0 chr1 105692993 105693109 -136971244 - MADE1 DNA Mariner 0 80 3 1525 202 74 48 chr1 105694199 105694619 -136969734 - MLT1D LTR MaLR 0 505 75 559 217 54 68 chr1 105694672 105694893 -136969460 - MLT1C LTR MaLR -153 314 97 3421 58 37 2 chr1 105694893 105695322 -136969031 - MLT2A1 LTR ERVL 0 444 1 25599 72 7 1 chr1 105695322 105698724 -136965629 - HERVL-A1 LTR ERVL 0 5654 2234 1972 118 19 10 chr1 105698724 105699037 -136965316 - THE1C LTR MaLR -59 316 1 243 267 47 35 chr1 105699165 105699251 -136965102 + MIR3 SINE MIR 69 155 -53 1688 92 9 13 chr1 105699300 105699527 -136964826 + AluSg/x SINE Alu 74 299 -10 800 203 12 0 chr1 105700763 105700926 -136963427 + MER2 DNA MER2_type 4 168 -177 335 239 343 0 chr1 105701038 105701172 -136963181 + MER5A DNA MER1_type 9 188 -1 287 309 44 15 chr1 105701206 105701342 -136963011 - MLT1L LTR MaLR -73 542 403 384 278 104 0 chr1 105701661 105701805 -136962548 + MER103 DNA DNA 7 165 -1 271 219 62 0 chr1 105701875 105701939 -136962414 - MER58 DNA MER1_type -62 279 212 235 244 0 0 chr1 105701952 105701997 -136962356 - MER58 DNA MER1_type -170 45 1 283 183 65 0 chr1 105702091 105702184 -136962169 + (TA)n Simple_repeat Simple_repeat 2 100 0 264 364 17 8 chr1 105702674 105702792 -136961561 + L2 LINE L2 3158 3276 -37 195 152 0 0 chr1 105703203 105703249 -136961104 + (CA)n Simple_repeat Simple_repeat 2 47 0 1456 194 96 26 chr1 105706702 105707047 -136957306 + MSTD LTR MaLR 26 394 -2 305 271 62 69 chr1 105707074 105707218 -136957135 + MIR SINE MIR 53 195 -67 243 315 14 0 chr1 105707242 105707315 -136957038 - L2 LINE L2 -2 3311 3238 251 297 16 0 chr1 105707734 105707798 -136956555 - L2 LINE L2 -2 3311 3247 1097 228 77 0 chr1 105708397 105708688 -136955665 + L1MB7 LINE L1 5851 6165 -19 286 340 0 9 chr1 105708758 105708864 -136955489 - MIR SINE MIR -124 138 34 329 220 33 22 chr1 105709502 105709593 -136954760 - MLT1K LTR MaLR -17 571 480 196 336 47 56 chr1 105710426 105710533 -136953820 - MIR SINE MIR -61 147 42 210 311 41 25 chr1 105711234 105711356 -136952997 + MIR SINE MIR 139 262 0 285 188 10 94 chr1 105711648 105711744 -136952609 - L1M LINE L1 -763 5405 5318 25 0 0 0 chr1 105711744 105711769 -136952584 + AT_rich Low_complexity Low_complexity 1 25 0 1967 152 0 0 chr1 105711769 105712059 -136952294 - AluSx SINE Alu -22 290 1 2313 211 12 25 chr1 105712059 105712114 -136952239 - L1 LINE L1 -815 5331 5277 2765 62 0 43 chr1 105712114 105712350 -136952003 + THE1A LTR MaLR 1 217 -138 2143 125 6 3 chr1 105712350 105712661 -136951692 + AluSx SINE Alu 1 312 0 2765 62 0 43 chr1 105712661 105712795 -136951558 + THE1A LTR MaLR 217 355 0 2313 211 12 25 chr1 105712795 105713340 -136951013 - L1 LINE L1 -869 5277 4739 3260 193 29 47 chr1 105713343 105713566 -136950787 + L1MA9 LINE L1 5396 5621 -691 5325 82 112 1 chr1 105713566 105714310 -136950043 - LTR12 LTR ERV1 0 826 1 3260 193 29 47 chr1 105714310 105714380 -136949973 + L1MA9 LINE L1 5621 5691 -621 2330 100 0 3 chr1 105714380 105714689 -136949664 + AluSc SINE Alu 2 309 0 3260 193 29 47 chr1 105714689 105714791 -136949562 + L1MA9 LINE L1 5691 5793 -519 180 77 0 0 chr1 105714791 105714817 -136949536 + (CA)n Simple_repeat Simple_repeat 1 26 0 3260 193 29 47 chr1 105714817 105715314 -136949039 + L1MA9 LINE L1 5793 6274 -38 2035 236 91 47 chr1 105715716 105716444 -136947909 - MER21B LTR ERV1 -61 802 43 334 268 0 0 chr1 105716447 105716518 -136947835 - MER21B LTR ERV1 -774 89 19 230 253 48 24 chr1 105716525 105716608 -136947745 - MER21B LTR ERV1 -767 96 12 259 317 65 16 chr1 105716623 105716746 -136947607 + LTR16C LTR ERVL 351 479 -12 830 303 30 23 chr1 105716923 105717223 -136947130 + LTR16A LTR ERVL 116 417 -33 421 281 65 16 chr1 105717238 105717423 -136946930 + HERV16 LTR ERVL 3 196 -4800 2354 217 100 24 chr1 105717520 105717785 -136946568 + L1ME2 LINE L1 4800 5043 -1121 985 222 91 60 chr1 105717785 105718137 -136946216 - MLT1A1 LTR MaLR -2 363 1 2354 217 100 24 chr1 105718137 105718982 -136945371 + L1ME2 LINE L1 5043 5980 -184 4266 145 94 88 chr1 105718982 105720392 -136943961 - pTR5 LTR ERV1 -42 2396 745 569 278 17 6 chr1 105720392 105720572 -136943781 + L1ME2 LINE L1 5974 6155 -9 28 0 0 0 chr1 105720932 105720960 -136943393 + AT_rich Low_complexity Low_complexity 1 28 0 1561 261 86 29 chr1 105722712 105723199 -136941154 + MLT1F LTR MaLR 1 515 -27 318 26 0 0 chr1 105723717 105723756 -136940597 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr1 105726250 105726274 -136938079 + AT_rich Low_complexity Low_complexity 1 24 0 670 241 82 0 chr1 105730103 105730273 -136934080 + MER5A DNA MER1_type 3 186 -3 2586 152 11 5 chr1 105730466 105730907 -136933446 - L1PA16 LINE L1 -18 6148 5705 571 309 11 64 chr1 105730983 105731248 -136933105 + MIR SINE MIR 12 262 0 458 337 40 12 chr1 105731894 105732146 -136932207 + MIR SINE MIR 3 261 -1 990 287 38 3 chr1 105732151 105732562 -136931791 - LTR16B LTR ERVL -13 451 3 468 304 94 17 chr1 105732593 105732774 -136931579 + MER91A DNA MER1_type 2 196 0 213 65 0 0 chr1 105736218 105736249 -136928104 + (A)n Simple_repeat Simple_repeat 1 31 0 203 280 91 49 chr1 105736864 105737007 -136927346 - MIR SINE MIR -21 241 93 303 28 0 0 chr1 105738549 105738585 -136925768 + (TG)n Simple_repeat Simple_repeat 2 37 0 200 191 0 24 chr1 105738867 105738909 -136925444 + CT-rich Low_complexity Low_complexity 2 42 0 805 199 51 0 chr1 105739188 105739364 -136924989 - MER3 DNA MER1_type -10 199 15 237 288 30 15 chr1 105739453 105739585 -136924768 - L1ME4a LINE L1 -4 6117 5984 207 0 0 0 chr1 105739604 105739627 -136924726 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1357 169 45 26 chr1 105739627 105739894 -136924459 - L1PA15 LINE L1 -5 6160 5889 180 286 24 0 chr1 105739926 105739968 -136924385 - L2 LINE L2 -61 3211 3169 183 328 114 15 chr1 105740573 105740704 -136923649 + L2 LINE L2 2385 2528 -786 444 270 27 0 chr1 105741009 105741120 -136923233 - L2 LINE L2 0 3313 3200 181 204 0 56 chr1 105741280 105741334 -136923019 - L2 LINE L2 -1 3312 3262 205 311 54 0 chr1 105741520 105741594 -136922759 - MIR SINE MIR -165 97 20 190 254 159 0 chr1 105741635 105741698 -136922655 + L2 LINE L2 3241 3313 0 21 0 0 0 chr1 105741909 105741930 -136922423 + AT_rich Low_complexity Low_complexity 1 21 0 435 216 108 98 chr1 105743489 105743614 -136920739 + MIR SINE MIR 19 148 -114 2100 129 3 0 chr1 105743614 105743909 -136920444 + AluSp SINE Alu 1 296 -17 435 216 108 98 chr1 105743909 105743987 -136920366 + MIR SINE MIR 148 224 -38 242 289 132 9 chr1 105745534 105745648 -136918705 + MIR SINE MIR 124 251 -11 252 0 0 0 chr1 105745957 105745985 -136918368 + (TG)n Simple_repeat Simple_repeat 2 29 0 26 30 0 0 chr1 105748148 105748181 -136916172 + AT_rich Low_complexity Low_complexity 1 33 0 505 292 39 90 chr1 105748656 105749143 -136915210 + MARNA DNA Mariner 15 476 -110 364 264 33 0 chr1 105750455 105750546 -136913807 + MIR3 SINE MIR 111 204 -4 1686 212 8 27 chr1 105750980 105751348 -136913005 - MLT1A1 LTR MaLR 0 365 5 5637 228 186 25 chr1 105751401 105752687 -136911666 + L1M3e LINE L1 1 1079 -6028 1857 187 0 0 chr1 105752687 105752987 -136911366 - AluSx SINE Alu -12 300 1 5637 228 186 25 chr1 105752987 105753938 -136910415 + L1M3e LINE L1 1079 2597 -4510 4786 168 14 16 chr1 105754059 105754276 -136910077 - L1 LINE L1 -745 5401 5185 195 69 0 0 chr1 105754276 105754305 -136910048 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4786 168 14 16 chr1 105754305 105755050 -136909303 - L1 LINE L1 -961 5185 4441 965 224 6 105 chr1 105755056 105755163 -136909190 + MLT1A2 LTR MaLR 93 209 -165 297 0 0 0 chr1 105755163 105755196 -136909157 + (TG)n Simple_repeat Simple_repeat 1 33 0 965 224 6 105 chr1 105755196 105755401 -136908952 + MLT1A2 LTR MaLR 209 374 0 545 137 0 0 chr1 105755483 105755578 -136908775 - L1M2 LINE L1 -859 5432 5338 296 245 80 49 chr1 105755861 105755995 -136908358 - MIR SINE MIR -64 144 31 200 333 90 0 chr1 105756419 105756497 -136907856 + L3 LINE CR1 1033 1117 -460 267 31 0 0 chr1 105756546 105756578 -136907775 + (T)n Simple_repeat Simple_repeat 1 32 0 1030 234 71 48 chr1 105757165 105757519 -136906834 - MER21B LTR ERV1 -112 751 390 2768 278 118 38 chr1 105757590 105758789 -136905564 - L2 LINE L2 -672 2642 1347 2113 170 32 27 chr1 105758790 105759340 -136905013 - MLT2A2 LTR ERVL 0 554 1 293 284 0 0 chr1 105759354 105759428 -136904925 - L2 LINE L2 -1978 1336 1263 2443 285 69 48 chr1 105759466 105760431 -136903922 - L2 LINE L2 -2014 1300 315 486 206 43 0 chr1 105763396 105763488 -136900865 - MER5A DNA MER1_type -84 105 10 1424 143 30 43 chr1 105763505 105763833 -136900520 - MER33 DNA MER1_type 0 324 1 191 293 107 0 chr1 105764295 105764370 -136899983 + MIR SINE MIR 168 250 -12 200 389 0 40 chr1 105766740 105766866 -136897487 - MIR SINE MIR -108 154 34 25 31 0 0 chr1 105766886 105766918 -136897435 + AT_rich Low_complexity Low_complexity 1 32 0 416 298 87 6 chr1 105766961 105767122 -136897231 - MIR SINE MIR -49 213 40 294 302 70 3 chr1 105767156 105767336 -136897017 + MIR SINE MIR 24 260 -2 338 194 0 118 chr1 105768104 105768160 -136896193 + MIR3 SINE MIR 106 148 -60 646 225 178 16 chr1 105768160 105768351 -136896002 + MER58A DNA MER1_type 2 223 -1 338 194 0 118 chr1 105768351 105768387 -136895966 + MIR3 SINE MIR 148 187 -21 * 511 244 55 69 chr1 105768383 105768600 -136895753 + MIR SINE MIR 48 261 -1 1218 216 102 0 chr1 105768646 105768901 -136895452 + AluJo SINE Alu 1 281 -31 251 387 88 7 chr1 105770570 105770707 -136893646 - L2 LINE L2 0 3272 3125 189 107 0 0 chr1 105771919 105771947 -136892406 + (T)n Simple_repeat Simple_repeat 1 28 0 2508 33 0 7 chr1 105773001 105773304 -136891049 - L1PA4 LINE L1 0 6155 5855 404 284 93 66 chr1 105773536 105773681 -136890672 + MIR SINE MIR 7 160 -102 2338 88 3 0 chr1 105773681 105773978 -136890375 + AluSp SINE Alu 3 300 -13 404 284 93 66 chr1 105773978 105774068 -136890285 + MIR SINE MIR 160 246 -16 334 89 0 0 chr1 105775320 105775365 -136888988 - MSTB2 LTR MaLR 0 457 413 643 230 84 69 chr1 105775365 105775674 -136888679 - MST-int LTR MaLR -736 915 605 2797 136 69 10 chr1 105775675 105776154 -136888199 - MER4B LTR ERV1 -103 507 1 1972 207 68 7 chr1 105776154 105776593 -136887760 - MSTD-int LTR MaLR -1268 467 2 1664 202 40 11 chr1 105776595 105776971 -136887382 - MSTD LTR MaLR 0 396 10 313 260 10 60 chr1 105777127 105777227 -136887126 + MIR SINE MIR 87 181 -81 1773 185 0 6 chr1 105777280 105777594 -136886759 + AluJb SINE Alu 1 312 0 388 311 102 0 chr1 105778178 105778384 -136885969 - LTR33A LTR ERVL 0 523 297 720 275 194 13 chr1 105778389 105778771 -136885582 - LTR50 LTR ERVL -344 451 1 407 316 88 16 chr1 105779129 105779322 -136885031 - MIR3 SINE MIR -1 207 1 284 130 22 0 chr1 105779832 105779878 -136884475 + MLT2B1 LTR ERVL 1 47 -473 2020 174 15 57 chr1 105779979 105780381 -136883972 + MLT2B2 LTR ERVL 3 387 -128 296 214 89 45 chr1 105780405 105780517 -136883836 - MIR3 SINE MIR -1 207 91 722 135 0 95 chr1 105780517 105780620 -136883733 + MLT2B2 LTR ERVL 382 468 -47 231 36 0 0 chr1 105780620 105780648 -136883705 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 722 135 0 95 chr1 105780648 105780692 -136883661 + MLT2B2 LTR ERVL 468 515 0 305 335 181 14 chr1 105781221 105781442 -136882911 - L2 LINE L2 -997 2317 2060 1421 191 38 14 chr1 105781448 105781772 -136882581 - MER61B LTR ERV1 0 425 1 180 0 0 0 chr1 105782078 105782098 -136882255 + (A)n Simple_repeat Simple_repeat 1 20 0 1325 189 176 24 chr1 105782867 105783378 -136880975 + MER4A LTR ERV1 1 446 -19 461 0 33 0 chr1 105784387 105784447 -136879906 + (TTTTA)n Simple_repeat Simple_repeat 4 180 0 2096 96 3 7 chr1 105784447 105784729 -136879624 - AluSq SINE Alu -1 342 3 312 319 35 43 chr1 105784730 105784962 -136879391 - L2 LINE L2 -11 3302 3073 2077 81 3 33 chr1 105784988 105785295 -136879058 - L1PB1 LINE L1 -1 6150 5853 376 309 69 56 chr1 105835522 105835614 -136828739 - L3 LINE CR1 -726 851 762 32 26 0 0 chr1 105835614 105835653 -136828700 + AT_rich Low_complexity Low_complexity 1 39 0 376 309 69 56 chr1 105835653 105835810 -136828543 - L3 LINE CR1 -815 762 560 22 35 0 0 chr1 105836274 105836303 -136828050 + AT_rich Low_complexity Low_complexity 1 29 0 734 282 26 0 chr1 105836366 105836561 -136827792 + MER20 DNA MER1_type 20 219 0 446 248 90 60 chr1 105836947 105837246 -136827107 - LTR16A1 LTR ERVL 0 457 150 30 27 0 0 chr1 105837927 105837964 -136826389 + AT_rich Low_complexity Low_complexity 1 37 0 1132 214 115 54 chr1 105838388 105838761 -136825592 + MSTD LTR MaLR 1 396 0 555 236 61 14 chr1 105839254 105839402 -136824951 - MLT1J LTR MaLR -316 195 41 300 186 29 0 chr1 105839592 105839662 -136824691 - L1MA10 LINE L1 -1 6333 6262 264 267 30 10 chr1 105839664 105839765 -136824588 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 10008 192 4 13 chr1 105839810 105841840 -136822513 - L1P LINE L1 -1134 5012 3001 1598 220 73 48 chr1 105841940 105842503 -136821850 - L1M4 LINE L1 -1301 4845 4269 24 0 0 0 chr1 105842589 105842613 -136821740 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr1 105842634 105842677 -136821676 + AT_rich Low_complexity Low_complexity 1 43 0 588 245 2 102 chr1 105842721 105843005 -136821348 - L1M4 LINE L1 -1922 4224 3962 1719 276 65 6 chr1 105843047 105843859 -136820494 - L1M4 LINE L1 -2620 3526 2667 1165 233 39 26 chr1 105843928 105844310 -136820043 - L1M4 LINE L1 -1353 4862 4476 343 262 9 9 chr1 105844485 105844592 -136819761 - L1MEc LINE L1 -3061 3154 3048 898 205 13 0 chr1 105844592 105844748 -136819605 + MER20 DNA MER1_type 1 158 -61 2896 282 54 21 chr1 105844763 105845642 -136818711 - L1MEc LINE L1 -3162 3053 2205 207 0 0 0 chr1 105845642 105845665 -136818688 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2896 282 54 21 chr1 105845665 105845683 -136818670 - L1MEc LINE L1 -4010 2205 2189 2148 117 0 0 chr1 105845683 105845973 -136818380 - AluSx SINE Alu -22 290 1 2896 282 54 21 chr1 105845973 105846766 -136817587 - L1MEc LINE L1 -4026 2189 1294 904 58 0 17 chr1 105846766 105846886 -136817467 - L1PA7 LINE L1 -3 6151 6034 2896 282 54 21 chr1 105846886 105847531 -136816822 - L1MEc LINE L1 -4921 1294 672 372 321 35 14 chr1 105847621 105847953 -136816400 - L1MEc LINE L1 -5837 559 35 590 309 51 25 chr1 105847978 105848253 -136816100 - L1MEc LINE L1 -6069 327 46 541 128 11 0 chr1 105848446 105848540 -136815813 + L1MA3 LINE L1 6198 6292 -13 25 51 0 0 chr1 105848540 105848579 -136815774 + AT_rich Low_complexity Low_complexity 1 39 0 1894 251 19 23 chr1 105848585 105849107 -136815246 + L1MA5A LINE L1 2172 2693 -3453 5427 158 22 33 chr1 105849107 105850186 -136814167 - MER11C LTR ERVK -4 1067 1 1894 251 19 23 chr1 105850186 105850232 -136814121 + L1MA5A LINE L1 2693 2738 -3408 9192 179 23 5 chr1 105850252 105853032 -136811321 + L1MA5A LINE L1 3467 6292 -5 460 272 101 32 chr1 105853283 105853629 -136810724 - L1MDa LINE L1 -4512 2028 1659 807 304 76 5 chr1 105853950 105854332 -136810021 + L1MC/D LINE L1 5364 5772 -2036 21 95 0 0 chr1 105854386 105854449 -136809904 + AT_rich Low_complexity Low_complexity 1 63 0 1209 118 123 0 chr1 105855971 105856174 -136808179 - MER30 DNA MER1_type -2 228 1 641 253 82 22 chr1 105857050 105857232 -136807121 + MIR SINE MIR 70 262 0 192 77 0 0 chr1 105858419 105858445 -136805908 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 212 297 0 27 chr1 105858864 105858938 -136805415 - L2 LINE L2 -831 2483 2412 697 314 112 32 chr1 105858964 105859340 -136805013 - L2 LINE L2 0 3313 2908 2299 119 3 0 chr1 105859432 105859744 -136804609 + AluSp SINE Alu 1 313 0 262 355 53 30 chr1 105859747 105860009 -136804344 - L2 LINE L2 -981 2333 2066 376 281 46 61 chr1 105860216 105860412 -136803941 - MLT1I LTR MaLR -123 286 94 2836 126 12 79 chr1 105860412 105860929 -136803424 + MER41B-int LTR ERV1 209 690 -5256 1363 178 9 0 chr1 105860930 105861155 -136803198 + MER41B-int LTR ERV1 1392 1618 -4328 802 167 5 99 chr1 105861132 105861182 -136803171 + MER41B-int LTR ERV1 2456 2509 -5028 * 2027 142 0 3 chr1 105861182 105861484 -136802869 - AluSq SINE Alu -12 301 1 802 167 5 99 chr1 105861484 105861625 -136802728 + MER41B-int LTR ERV1 2509 2629 -4908 * 3556 156 16 30 chr1 105861621 105862423 -136801930 + MER41B-int LTR ERV1 2167 3358 -3000 * 16780 111 21 19 chr1 105862410 105864314 -136800039 + MER41B-int LTR ERV1 3300 5214 -732 2164 102 0 3 chr1 105864314 105864625 -136799728 + AluSq SINE Alu 3 312 0 16780 111 21 19 chr1 105864625 105865360 -136798993 + MER41B-int LTR ERV1 5214 5946 0 2352 147 20 3 chr1 105865362 105865873 -136798480 + MER41B LTR ERV1 1 554 0 1259 146 55 23 chr1 105866071 105866341 -136798012 + LTR49 LTR ERV1 2 414 -337 358 197 0 42 chr1 105866325 105866396 -136797957 + LTR29 LTR ERV1 555 622 0 * 570 198 41 0 chr1 105866606 105866727 -136797626 - MIR SINE MIR -10 252 127 1904 170 82 0 chr1 105866731 105867073 -136797280 + LTR32 LTR ERVL 15 384 -87 2499 195 16 8 chr1 105867101 105867598 -136796755 + MER41B LTR ERV1 130 630 -5 421 214 48 0 chr1 105867615 105867699 -136796654 + LTR32 LTR ERVL 381 468 -3 338 382 46 7 chr1 105867781 105867933 -136796420 + MER5A DNA MER1_type 31 188 -1 1757 235 22 39 chr1 105868218 105868514 -136795839 - MER82 DNA MER2_type -4 649 362 2024 110 7 36 chr1 105868514 105868823 -136795530 + AluSx SINE Alu 3 302 -10 1757 235 22 39 chr1 105868823 105868985 -136795368 - MER82 DNA MER2_type -291 362 199 1014 191 11 0 chr1 105869281 105869459 -136794894 - MER82 DNA MER2_type -457 196 17 582 328 88 3 chr1 105869476 105869760 -136794593 - L2 LINE L2 -31 3282 2975 220 303 25 76 chr1 105870386 105870505 -136793848 - L2 LINE L2 0 3313 3201 1047 199 106 71 chr1 105870702 105871154 -136793199 - LTR37B LTR ERV1 0 468 1 239 265 0 0 chr1 105871188 105871237 -136793116 + L2 LINE L2 3217 3265 -7 374 240 25 41 chr1 105873541 105873662 -136790691 + MIR SINE MIR 63 181 -81 233 353 92 84 chr1 105873685 105873934 -136790419 - L2 LINE L2 -21 3251 3001 207 160 69 69 chr1 105873991 105874135 -136790218 + (TATAA)n Simple_repeat Simple_repeat 2 145 0 1125 290 33 78 chr1 105874277 105875009 -136789344 + L1MD2 LINE L1 56 754 -5316 546 81 0 0 chr1 105875009 105875083 -136789270 - MADE1 DNA Mariner -6 74 1 1715 273 105 27 chr1 105875083 105876810 -136787543 + L1MD2 LINE L1 753 2639 -3441 1054 186 24 119 chr1 105876838 105877166 -136787187 - MER82 DNA MER2_type -356 297 1 982 276 143 10 chr1 105877179 105877669 -136786684 + L1MD2 LINE L1 5308 5862 -431 1087 125 7 0 chr1 105877669 105877821 -136786532 - AluSg/x SINE Alu -16 296 144 390 259 133 13 chr1 105877821 105877979 -136786374 + L1ME2 LINE L1 5925 6101 -63 254 256 51 44 chr1 105878166 105878303 -136786050 + L1MC4 LINE L1 7904 8041 -1 823 323 35 41 chr1 105878313 105878799 -136785554 + MARNA DNA Mariner 28 510 -76 21 0 0 0 chr1 105879469 105879490 -136784863 + AT_rich Low_complexity Low_complexity 1 21 0 320 260 41 8 chr1 105879635 105879758 -136784595 + L1ME4a LINE L1 5954 6080 -41 267 227 0 0 chr1 105879774 105879840 -136784513 + GA-rich Low_complexity Low_complexity 3 68 0 201 229 0 0 chr1 105879953 105880001 -136784352 + GA-rich Low_complexity Low_complexity 2 49 0 367 342 111 29 chr1 105880079 105880459 -136783894 - L2 LINE L2 -740 2574 2164 1798 161 49 27 chr1 105880505 105880872 -136783481 + THE1C LTR MaLR 1 375 0 9224 136 12 53 chr1 105880875 105881295 -136783058 + THE1C-int LTR MaLR 4 440 -1140 1863 123 15 0 chr1 105881295 105881555 -136782798 + AluSx SINE Alu 1 264 -48 9224 136 12 53 chr1 105881555 105882771 -136781582 + THE1C-int LTR MaLR 440 1572 -8 1307 152 50 115 chr1 105882779 105883180 -136781173 + THE1C LTR MaLR 1 375 0 186 189 0 0 chr1 105885303 105885340 -136779013 + GA-rich Low_complexity Low_complexity 2 38 0 209 228 0 51 chr1 105885363 105885442 -136778911 + GA-rich Low_complexity Low_complexity 3 77 0 405 341 96 10 chr1 105885559 105885852 -136778501 - L1 LINE L1 -1552 4594 4277 21 0 0 0 chr1 105885911 105885932 -136778421 + AT_rich Low_complexity Low_complexity 1 21 0 1703 162 28 7 chr1 105886299 105886703 -136777650 + L1MB7 LINE L1 5171 5590 -594 2549 180 22 30 chr1 105886706 105887245 -136777108 + L1MB7 LINE L1 5649 6183 -1 2537 65 0 3 chr1 105887579 105887887 -136776466 + AluY SINE Alu 1 307 -4 2588 215 48 6 chr1 105888735 105889382 -136774971 - L1P LINE L1 -3167 2979 2306 1219 243 89 12 chr1 105889388 105889711 -136774642 - L1 LINE L1 -1119 5027 4730 2062 138 0 13 chr1 105889711 105890040 -136774313 - AluSg SINE Alu 0 310 1 1219 243 89 12 chr1 105890040 105890278 -136774075 - L1 LINE L1 -1416 4730 2895 23 54 0 0 chr1 105890279 105890316 -136774037 + AT_rich Low_complexity Low_complexity 1 37 0 584 260 54 10 chr1 105890630 105890834 -136773519 + L1ME3 LINE L1 5625 5837 -325 259 338 29 29 chr1 105891712 105891851 -136772502 + L2 LINE L2 2537 2675 -639 1912 98 0 107 chr1 105892206 105892543 -136771810 - AluSx SINE Alu -1 301 1 2155 117 3 10 chr1 105893024 105893331 -136771022 + AluSq SINE Alu 1 305 -8 436 353 30 0 chr1 105893652 105893785 -136770568 + L2 LINE L2 3127 3263 -9 283 336 138 31 chr1 105893979 105894363 -136769990 + L2 LINE L2 1881 2305 -1009 209 317 0 90 chr1 105894621 105894766 -136769587 + L2 LINE L2 2718 2849 -465 354 298 86 7 chr1 105894920 105895071 -136769282 - L2 LINE L2 -5 3308 3146 213 385 94 0 chr1 105895189 105895306 -136769047 + L2 LINE L2 3144 3271 -1 1245 60 6 16 chr1 105897050 105897232 -136767121 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 279 279 34 57 chr1 105900621 105900777 -136763576 - MLT1L LTR MaLR -243 275 137 3994 164 49 31 chr1 105901101 105902023 -136762330 - L1MA4A LINE L1 -28 6275 5277 10281 240 49 28 chr1 105902025 105904310 -136760043 - L1 LINE L1 -1268 5580 3345 2302 171 31 0 chr1 105904310 105904725 -136759628 - MSTA LTR MaLR 0 428 1 10281 240 49 28 chr1 105904725 105907797 -136756556 - L1 LINE L1 -3503 3345 1 27 0 0 0 chr1 105908369 105908396 -136755957 + AT_rich Low_complexity Low_complexity 1 27 0 34 72 0 0 chr1 105910125 105910194 -136754159 + AT_rich Low_complexity Low_complexity 1 69 0 1290 194 112 8 chr1 105910499 105910757 -136753596 - AluJb SINE Alu -13 299 15 530 245 38 76 chr1 105910773 105910957 -136753396 + L2 LINE L2 3137 3313 0 402 202 139 0 chr1 105911189 105911318 -136753035 + L1ME2 LINE L1 5019 5165 -981 715 262 39 46 chr1 105911372 105911654 -136752699 + L1ME2 LINE L1 5875 6154 -10 1048 323 104 36 chr1 105911731 105911823 -136752530 + L1ME2 LINE L1 3936 4020 -2126 1465 119 26 13 chr1 105911823 105912050 -136752303 - MER30 DNA MER1_type 0 230 1 1048 323 104 36 chr1 105912050 105912375 -136751978 + L1ME2 LINE L1 4020 4322 -1824 938 238 4 35 chr1 105912375 105912421 -136751932 + MER58A DNA MER1_type 1 47 -2373 2279 107 3 0 chr1 105912421 105912720 -136751633 - AluSp SINE Alu -13 300 1 938 238 4 35 chr1 105912720 105912904 -136751449 + MER58A DNA MER1_type 47 224 0 1048 323 104 36 chr1 105912904 105913590 -136750763 + L1ME2 LINE L1 4322 5115 -1031 305 285 73 84 chr1 105913651 105913870 -136750483 + L1ME2 LINE L1 5267 5482 -877 1445 200 0 21 chr1 105913870 105914155 -136750198 - AluJo SINE Alu -30 282 4 305 285 73 84 chr1 105914155 105914279 -136750074 + L1ME2 LINE L1 5482 5606 -753 355 321 117 8 chr1 105914537 105914802 -136749551 + L1ME2 LINE L1 5617 5910 -254 438 36 0 0 chr1 105914890 105914946 -136749407 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1948 256 52 34 chr1 105916911 105917275 -136747078 - L1ME2 LINE L1 -15 6149 5766 180 0 0 0 chr1 105917275 105917295 -136747058 + (TA)n Simple_repeat Simple_repeat 1 20 0 1948 256 52 34 chr1 105917295 105917586 -136746767 - L1ME2 LINE L1 -398 5766 5482 243 258 62 109 chr1 105918835 105918963 -136745390 + MIR SINE MIR 91 212 -50 22 0 0 0 chr1 105919550 105919572 -136744781 + AT_rich Low_complexity Low_complexity 1 22 0 1641 250 47 18 chr1 105920727 105921239 -136743114 - L1ME1 LINE L1 -5 6161 5635 644 296 82 42 chr1 105921291 105921740 -136742613 - L1MEc LINE L1 -5792 604 138 38 39 0 0 chr1 105922002 105922054 -136742299 + AT_rich Low_complexity Low_complexity 1 52 0 318 357 42 0 chr1 105922080 105922223 -136742130 - MIR SINE MIR -56 206 58 303 273 52 104 chr1 105922390 105922544 -136741809 - L2 LINE L2 -188 3084 2939 285 349 52 96 chr1 105922839 105923163 -136741190 - L2 LINE L2 -8 3264 2955 282 308 113 0 chr1 105924058 105924191 -136740162 + MIR SINE MIR 97 244 -18 2582 116 25 19 chr1 105924603 105925034 -136739319 - MER61C LTR ERV1 0 434 1 2077 141 5 25 chr1 105926135 105926503 -136737850 + MER46B DNA MER2_type 1 236 0 802 235 37 37 chr1 105926530 105926747 -136737606 - MER20 DNA MER1_type -1 218 2 224 170 21 0 chr1 105927259 105927306 -136737047 + A-rich Low_complexity Low_complexity 5 52 0 249 254 0 0 chr1 105927556 105927615 -136736738 + (CA)n Simple_repeat Simple_repeat 2 60 0 1909 144 29 32 chr1 105928064 105928439 -136735914 - THE1C LTR MaLR -1 374 1 230 260 200 20 chr1 105928707 105928807 -136735546 + LTR33 LTR ERVL 54 171 -350 380 283 49 54 chr1 105928893 105928969 -136735384 + LTR33 LTR ERVL 337 412 -109 2207 147 28 17 chr1 105928969 105929329 -136735024 + THE1B LTR MaLR 1 364 0 11048 103 11 6 chr1 105929329 105929776 -136734577 + THE1B-int LTR MaLR 1 445 -1135 2014 110 27 23 chr1 105929776 105930076 -136734277 + AluSx SINE Alu 4 304 -8 11048 103 11 6 chr1 105930076 105931201 -136733152 + THE1B-int LTR MaLR 445 1580 0 2138 147 37 11 chr1 105931201 105931556 -136732797 + THE1B LTR MaLR 1 364 0 380 283 49 54 chr1 105931556 105931589 -136732764 + LTR33 LTR ERVL 410 442 -79 6187 150 62 9 chr1 105931589 105932757 -136731596 - Tigger3b DNA MER2_type 0 1231 1 380 283 49 54 chr1 105932757 105932828 -136731525 + LTR33 LTR ERVL 442 519 -2 6517 207 62 77 chr1 105933708 105935444 -136728909 + MER52A LTR ERV1 46 1755 0 2349 117 22 11 chr1 105935547 105935907 -136728446 - THE1B LTR MaLR 0 364 1 2006 230 85 20 chr1 105935907 105936495 -136727858 - L1ME1 LINE L1 -11 6435 5810 250 275 29 0 chr1 105936605 105936674 -136727679 + MLT1G1 LTR MaLR 154 224 -371 2503 270 86 19 chr1 105936914 105937258 -136727095 - L1ME1 LINE L1 -2497 3929 3610 1509 184 7 101 chr1 105937258 105937442 -136726911 + MLT1A2 LTR MaLR 2 166 -208 195 114 0 0 chr1 105937442 105937477 -136726876 + (TC)n Simple_repeat Simple_repeat 2 36 0 1509 184 7 101 chr1 105937477 105937665 -136726688 + MLT1A2 LTR MaLR 166 370 -4 2503 270 86 19 chr1 105937665 105937773 -136726580 - L1ME1 LINE L1 -2816 3610 3511 183 100 0 0 chr1 105937773 105937803 -136726550 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2503 270 86 19 chr1 105937803 105938414 -136725939 - L1ME1 LINE L1 -2915 3511 2793 1854 172 61 3 chr1 105938462 105938822 -136725531 - L1MC1 LINE L1 -30 6303 5923 7653 219 134 16 chr1 105938840 105940777 -136723576 - L1ME1 LINE L1 -4226 2200 34 1169 282 45 38 chr1 105940778 105941532 -136722821 - L1MEc LINE L1 -3656 2559 1842 2081 135 3 3 chr1 105942316 105942628 -136721725 + AluSq SINE Alu 1 312 -1 413 231 108 31 chr1 105942692 105942822 -136721531 + MIR SINE MIR 90 229 -33 5038 171 32 51 chr1 105943055 105944229 -136720124 - L1MC2 LINE L1 -23 6321 5175 214 200 0 62 chr1 105944885 105944950 -136719403 + A-rich Low_complexity Low_complexity 2 62 0 811 238 72 27 chr1 105944979 105945184 -136719169 - MIR SINE MIR -28 234 17 328 302 74 62 chr1 105945184 105945588 -136718765 - MLT1I LTR MaLR 0 409 1 811 238 72 27 chr1 105945588 105945605 -136718748 - MIR SINE MIR -245 17 2 377 311 50 44 chr1 105945931 105946252 -136718101 + HAL1b LINE L1 373 695 -653 1471 174 44 17 chr1 105946436 105946729 -136717624 + AluSx SINE Alu 3 303 -9 25 51 0 0 chr1 105946779 105946818 -136717535 + AT_rich Low_complexity Low_complexity 1 39 0 399 347 42 82 chr1 105948613 105949086 -136715267 - L2 LINE L2 0 3272 2819 811 203 16 57 chr1 105949097 105949310 -136715043 - MSTB2 LTR MaLR 0 457 223 447 255 80 37 chr1 105949750 105949938 -136714415 - MER46C DNA MER2_type -12 326 131 262 374 15 61 chr1 105952666 105952864 -136711489 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr1 105953072 105953096 -136711257 + AT_rich Low_complexity Low_complexity 1 24 0 343 324 58 46 chr1 105954483 105954680 -136709673 - MIR SINE MIR -42 220 21 2157 71 3 3 chr1 105955098 105955381 -136708972 - AluY SINE Alu -28 283 1 1368 90 0 11 chr1 105955452 105955630 -136708723 + AluSp SINE Alu 103 278 -35 409 19 0 0 chr1 105955630 105955683 -136708670 + L1HS LINE L1 6103 6155 0 612 51 0 0 chr1 105955897 105955975 -136708378 - MADE1 DNA Mariner 0 80 3 435 274 105 86 chr1 105956180 105956553 -136707800 + L2 LINE L2 2934 3313 0 517 269 81 0 chr1 105957254 105957414 -136706939 - Zaphod DNA AcHobo 0 4031 3859 731 239 40 11 chr1 105957455 105957631 -136706722 - Zaphod DNA AcHobo -3431 600 420 253 325 12 12 chr1 105957633 105957716 -136706637 - Zaphod DNA AcHobo -3857 174 92 25 0 0 0 chr1 105957820 105957845 -136706508 + AT_rich Low_complexity Low_complexity 1 25 0 1332 178 11 14 chr1 105957845 105958121 -136706232 - L1MA9 LINE L1 -38 6274 6000 2279 88 0 0 chr1 105958178 105958472 -136705881 - AluY SINE Alu -17 294 1 220 322 0 35 chr1 105958513 105958600 -136705753 - MER5A DNA MER1_type -74 115 32 359 250 159 34 chr1 105959262 105959470 -136704883 - L1ME4a LINE L1 -264 5857 5624 369 0 0 0 chr1 105960380 105960421 -136703932 + (CA)n Simple_repeat Simple_repeat 1 41 0 891 185 0 0 chr1 105960423 105960569 -136703784 - FRAM SINE Alu -30 146 1 298 268 159 7 chr1 105960641 105960779 -136703574 + MIR SINE MIR 66 224 -38 21 0 0 0 chr1 105961231 105961252 -136703101 + AT_rich Low_complexity Low_complexity 1 21 0 209 292 0 0 chr1 105961753 105961818 -136702535 + A-rich Low_complexity Low_complexity 1 65 0 24 53 0 0 chr1 105962865 105962903 -136701450 + AT_rich Low_complexity Low_complexity 1 38 0 320 321 37 8 chr1 105963285 105963419 -136700934 + MER69 DNA AcHobo 1 138 -2388 355 358 115 65 chr1 105963937 105964416 -136699937 + L2 LINE L2 2767 3267 -5 1606 193 97 5 chr1 105964675 105965058 -136699295 + LTR52 LTR ERVL 4 421 0 186 167 0 0 chr1 105965469 105965505 -136698848 + T-rich Low_complexity Low_complexity 52 87 0 2077 135 3 0 chr1 105965507 105965818 -136698535 - AluSx SINE Alu 0 312 1 468 0 0 0 chr1 105966719 105966771 -136697582 + (TG)n Simple_repeat Simple_repeat 2 53 0 270 0 0 0 chr1 105967412 105967442 -136696911 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr1 105968405 105968426 -136695927 + AT_rich Low_complexity Low_complexity 1 21 0 4599 42 33 0 chr1 105968751 105969323 -136695030 + LTR10C LTR ERV1 1 591 0 272 317 28 76 chr1 105969742 105969887 -136694466 - L2 LINE L2 -1 3271 3134 618 250 133 15 chr1 105971617 105971813 -136692540 - MIR SINE MIR -41 221 3 442 320 72 69 chr1 105971888 105972222 -136692131 + L3 LINE CR1 1117 1451 -126 626 290 58 85 chr1 105972278 105972553 -136691800 - L2 LINE L2 -74 3239 2958 3792 94 0 4 chr1 105972553 105973066 -136691287 + MER9 LTR ERVK 1 511 0 626 290 58 85 chr1 105973066 105973367 -136690986 - L2 LINE L2 -355 2958 2670 299 307 29 36 chr1 105973399 105973536 -136690817 + L3 LINE CR1 1441 1576 -1 2340 82 0 35 chr1 105973836 105974154 -136690199 - AluY SINE Alu -4 307 1 6576 119 19 27 chr1 105974278 105975487 -136688866 - L1MA3 LINE L1 -2 7722 6525 6548 182 46 22 chr1 105975459 105977901 -136686452 - L1MA3 LINE L1 -2378 5187 2686 * 1675 190 64 0 chr1 105979127 105979453 -136684900 - MER7A DNA MER2_type 0 346 2 219 323 42 10 chr1 105980887 105980983 -136683370 - MIR SINE MIR -59 149 51 195 42 0 0 chr1 105982245 105982269 -136682084 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 27776 141 17 31 chr1 105982271 105988668 -136675685 - L1PA8 LINE L1 -13 6474 10 22 0 0 0 chr1 105989659 105989681 -136674672 + AT_rich Low_complexity Low_complexity 1 22 0 229 347 69 28 chr1 105991041 105991185 -136673168 + MIR3 SINE MIR 20 169 -39 2861 258 46 10 chr1 105991965 105993130 -136671223 - L1ME1 LINE L1 -5 6161 4954 231 284 14 27 chr1 105993164 105993238 -136671115 + CT-rich Low_complexity Low_complexity 3 75 0 1797 266 53 25 chr1 105993238 105994009 -136670344 - L1ME1 LINE L1 -1194 4952 4160 751 261 56 45 chr1 105993999 105994218 -136670135 - L1ME1 LINE L1 -2846 3300 3085 * 379 92 0 53 chr1 105994218 105994294 -136670059 - L1PA15 LINE L1 0 6165 6094 751 261 56 45 chr1 105994294 105994518 -136669835 - L1ME1 LINE L1 -3061 3085 2852 1243 248 114 22 chr1 105994526 105995026 -136669327 - L1ME1 LINE L1 -3353 2793 2248 717 61 35 0 chr1 105995714 105995829 -136668524 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 622 295 136 32 chr1 105995941 105996344 -136668009 - L2 LINE L2 -173 3140 2711 550 233 14 41 chr1 105996436 105996582 -136667771 - MER69 DNA AcHobo -2384 142 1 1017 274 36 51 chr1 105996583 105996974 -136667379 - L2 LINE L2 -597 2717 2333 310 250 0 15 chr1 105999590 105999658 -136664695 - L2 LINE L2 0 3272 3206 183 205 0 0 chr1 105999661 105999700 -136664653 + (TA)n Simple_repeat Simple_repeat 2 40 0 301 286 214 0 chr1 105999936 106000048 -136664305 - L2 LINE L2 -217 3055 2920 686 141 91 25 chr1 106000118 106000228 -136664125 + FLAM_C SINE Alu 1 121 -191 222 37 0 0 chr1 106000228 106000255 -136664098 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2021 108 17 14 chr1 106001608 106001905 -136662448 - AluSx SINE Alu -14 298 1 338 241 51 0 chr1 106002092 106002171 -136662182 + MIR SINE MIR 168 250 -12 218 146 0 104 chr1 106002139 106002187 -136662166 + L2 LINE L2 3264 3306 -7 * 225 182 30 15 chr1 106002265 106002331 -136662022 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 282 130 0 143 chr1 106002355 106002432 -136661921 + MLT2B1 LTR ERVL 455 520 0 320 280 63 35 chr1 106003387 106003530 -136660823 + MIR SINE MIR 66 212 -50 264 291 0 58 chr1 106003949 106004035 -136660318 - L2 LINE L2 -14 3258 3178 22 0 0 0 chr1 106004111 106004133 -136660220 + AT_rich Low_complexity Low_complexity 1 22 0 374 323 37 98 chr1 106004210 106004415 -136659938 + L1MC4 LINE L1 6762 6944 -1098 1935 150 0 0 chr1 106004415 106004729 -136659624 + AluSx SINE Alu 1 314 0 374 323 37 98 chr1 106004729 106004848 -136659505 + L1MC4 LINE L1 6944 7069 -973 304 234 86 31 chr1 106004922 106005050 -136659303 - L2 LINE L2 -106 3207 3073 1112 286 213 16 chr1 106005236 106005813 -136658540 - L2 LINE L2 -628 2686 1996 2488 229 155 1 chr1 106007066 106007868 -136656485 - Charlie1a DNA MER1_type -1 1454 530 455 276 24 8 chr1 106007866 106007993 -136656360 - Charlie1a DNA MER1_type -1326 129 1 * 184 273 26 91 chr1 106008032 106008109 -136656244 - L2 LINE L2 -200 3072 3001 256 388 99 7 chr1 106008203 106008355 -136655998 - L2 LINE L2 -517 2797 2632 249 33 0 0 chr1 106008454 106008484 -136655869 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 248 261 104 26 chr1 106008608 106008723 -136655630 - L2 LINE L2 -1007 2307 2184 208 350 75 0 chr1 106009608 106009688 -136654665 - L2 LINE L2 -35 3278 3193 2617 99 5 11 chr1 106010341 106010716 -136653637 - THE1C LTR MaLR 0 375 3 186 133 0 0 chr1 106011157 106011187 -136653166 + (T)n Simple_repeat Simple_repeat 1 30 0 2353 81 0 3 chr1 106011347 106011642 -136652711 - AluY SINE Alu -17 294 1 4400 225 88 6 chr1 106011715 106012923 -136651430 + L1MC/D LINE L1 2788 4094 -2052 881 211 50 73 chr1 106012925 106013302 -136651051 + MSTC LTR MaLR 1 421 -7 4233 232 31 12 chr1 106013302 106014201 -136650152 + L1MC/D LINE L1 4085 5024 -1320 204 97 0 0 chr1 106014201 106014232 -136650121 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4233 232 31 12 chr1 106014232 106014851 -136649502 + L1MC/D LINE L1 5024 5629 -715 675 241 65 0 chr1 106016408 106016578 -136647775 + MIR SINE MIR 53 233 -29 27 29 0 0 chr1 106016588 106016622 -136647731 + AT_rich Low_complexity Low_complexity 1 34 0 862 278 37 37 chr1 106016902 106017229 -136647124 + MER69 DNA AcHobo 72 398 -828 403 188 31 0 chr1 106017253 106017349 -136647004 - L1MA8 LINE L1 -2 6289 6191 601 178 16 0 chr1 106017367 106017496 -136646857 + MER69 DNA AcHobo 1962 2092 -434 21 36 0 0 chr1 106017496 106017524 -136646829 + AT_rich Low_complexity Low_complexity 1 28 0 2027 194 74 176 chr1 106017629 106017972 -136646381 - L1MC3 LINE L1 -56 6114 5738 287 225 0 88 chr1 106017972 106018052 -136646301 - MLT1F1 LTR MaLR -449 118 46 2027 194 74 176 chr1 106018052 106018899 -136645454 - L1MC3 LINE L1 -432 5738 6387 1385 210 43 4 chr1 106018899 106019175 -136645178 - AluJb SINE Alu -15 287 1 2027 194 74 176 chr1 106019175 106019477 -136644876 - L1MC3 LINE L1 218 6388 6057 22 35 0 0 chr1 106020108 106020137 -136644216 + AT_rich Low_complexity Low_complexity 1 29 0 405 340 0 7 chr1 106020948 106021098 -136643255 - MER117 DNA MER1_type -1 196 48 231 318 47 12 chr1 106022768 106022853 -136641500 + MIR SINE MIR 56 143 -65 189 0 0 0 chr1 106023143 106023164 -136641189 + (TG)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr1 106023211 106023246 -136641107 + AT_rich Low_complexity Low_complexity 1 35 0 314 307 62 73 chr1 106024437 106024616 -136639737 + MIR SINE MIR 15 191 -71 327 331 49 25 chr1 106024842 106025005 -136639348 + L2 LINE L2 1814 1980 -1334 2048 197 22 19 chr1 106025207 106025624 -136638729 - MER47B DNA MER2_type 0 418 1 944 182 73 0 chr1 106026061 106026253 -136638100 - MER2 DNA MER2_type -139 206 1 464 303 87 25 chr1 106026276 106026517 -136637836 - MIR SINE MIR -1 261 6 1853 163 48 3 chr1 106026656 106027011 -136637342 - L1PB4 LINE L1 -2 6154 5784 343 214 48 24 chr1 106027701 106027785 -136636568 - L1MC4 LINE L1 -1343 6699 6614 282 342 74 60 chr1 106028600 106029033 -136635320 + L2 LINE L2 2827 3265 -7 33 43 0 0 chr1 106029827 106029874 -136634479 + AT_rich Low_complexity Low_complexity 1 47 0 541 174 74 67 chr1 106030651 106030800 -136633553 - MER20 DNA MER1_type 0 219 70 230 298 48 0 chr1 106030802 106030886 -136633467 + L1MC4 LINE L1 6614 6701 -1341 266 303 0 0 chr1 106030886 106031004 -136633349 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr1 106031005 106031026 -136633327 + (TG)n Simple_repeat Simple_repeat 2 22 0 306 186 0 100 chr1 106031034 106031104 -136633249 - MER20 DNA MER1_type -156 63 1 226 236 18 0 chr1 106031711 106031766 -136632587 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 1859 182 7 82 chr1 106032103 106032531 -136631822 - MSTD LTR MaLR 0 396 1 304 236 0 0 chr1 106032859 106032914 -136631439 - L2 LINE L2 -32 3240 3186 180 325 72 0 chr1 106035131 106035214 -136629139 + MIR SINE MIR 124 212 -50 567 329 61 4 chr1 106036889 106037120 -136627233 + MLT1L LTR MaLR 330 573 -42 2023 119 14 14 chr1 106037152 106037445 -136626908 + AluSx SINE Alu 3 295 -17 37 23 0 0 chr1 106037934 106037978 -136626375 + AT_rich Low_complexity Low_complexity 1 44 0 420 273 77 95 chr1 106038728 106039116 -136625237 + HAL1 LINE L1 881 1261 -1246 2077 141 23 0 chr1 106039415 106039534 -136624819 + AluSx SINE Alu 1 116 -196 198 0 0 0 chr1 106039534 106039556 -136624797 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2077 141 23 0 chr1 106039556 106039741 -136624612 + AluSx SINE Alu 116 312 0 366 264 138 22 chr1 106040480 106040737 -136623616 + L1MEc LINE L1 802 1040 -5178 1473 225 59 68 chr1 106040737 106041322 -136623031 + L1MDa LINE L1 21 1039 -5501 3073 177 34 2 chr1 106041322 106041854 -136622499 - MER52A LTR ERV1 0 1755 1207 * 4441 177 96 20 chr1 106041836 106042773 -136621580 - MER52A LTR ERV1 -676 1079 1 4321 200 77 54 chr1 106042774 106044160 -136620193 + L1MDa LINE L1 1037 2453 -4087 1143 286 105 22 chr1 106044172 106045021 -136619332 + L1M4 LINE L1 3530 4484 -1662 257 203 14 0 chr1 106045055 106045124 -136619229 + L1M4 LINE L1 4618 4687 -1459 24 32 0 0 chr1 106045801 106045832 -136618521 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr1 106045851 106045893 -136618460 + AT_rich Low_complexity Low_complexity 1 42 0 1226 231 96 89 chr1 106046005 106046884 -136617469 - HAL1b LINE L1 -173 1175 291 21 0 0 0 chr1 106048053 106048074 -136616279 + AT_rich Low_complexity Low_complexity 1 21 0 247 305 171 0 chr1 106049091 106049196 -136615157 - L2 LINE L2 -1 3271 3149 345 56 0 37 chr1 106052551 106052605 -136611748 + L1PA8 LINE L1 6115 6166 -6 8080 138 8 13 chr1 106052656 106053956 -136610397 + HSMAR2 DNA Mariner 8 1301 -1 292 232 24 0 chr1 106053956 106054038 -136610315 + (TA)n Simple_repeat Simple_repeat 2 85 0 992 161 0 0 chr1 106054038 106054200 -136610153 + HSMAR2 DNA Mariner 649 810 -492 185 306 0 16 chr1 106055708 106055770 -136608583 - L3b LINE CR1 -167 1416 1356 22 35 0 0 chr1 106055770 106055799 -136608554 + AT_rich Low_complexity Low_complexity 1 29 0 2403 100 0 0 chr1 106055802 106056111 -136608242 + AluSx SINE Alu 1 309 -3 314 352 31 20 chr1 106056186 106056382 -136607971 - L3 LINE CR1 -314 1263 1066 206 32 32 0 chr1 106056423 106056454 -136607899 + (TA)n Simple_repeat Simple_repeat 2 33 0 1920 150 0 14 chr1 106056454 106056747 -136607606 - AluJb SINE Alu -22 290 2 287 320 41 14 chr1 106057041 106057188 -136607165 - MIR SINE MIR -46 216 66 334 331 52 7 chr1 106057284 106057438 -136606915 + MIR SINE MIR 53 213 -49 466 277 90 11 chr1 106057833 106058010 -136606343 + Charlie2a DNA MER1_type 200 390 -2472 400 281 133 5 chr1 106058058 106058120 -136606233 + Charlie2a DNA MER1_type 734 787 -2075 2033 224 75 44 chr1 106058120 106058736 -136605617 + MER92B LTR ERV1 2 636 0 400 281 133 5 chr1 106058736 106058869 -136605484 + Charlie2a DNA MER1_type 787 954 -1908 516 200 9 0 chr1 106058895 106059000 -136605353 + Charlie2a DNA MER1_type 2753 2858 -4 2173 105 0 0 chr1 106059313 106059590 -136604763 + AluSc SINE Alu 1 277 -32 267 0 70 0 chr1 106059592 106059635 -136604718 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 270 307 144 51 chr1 106060166 106060576 -136603777 - LTR33 LTR ERVL -55 466 19 39 22 0 0 chr1 106060762 106060808 -136603545 + AT_rich Low_complexity Low_complexity 1 46 0 23 68 0 0 chr1 106061134 106061178 -136603175 + AT_rich Low_complexity Low_complexity 1 44 0 601 325 47 5 chr1 106061283 106061495 -136602858 - MIR SINE MIR -2 260 40 966 246 5 19 chr1 106061607 106061818 -136602535 + MER58A DNA MER1_type 17 224 0 2930 164 47 2 chr1 106061964 106062457 -136601896 - MLT2B2 LTR ERVL 0 515 1 186 43 0 0 chr1 106062588 106062611 -136601742 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 371 324 93 17 chr1 106064272 106064597 -136599756 + MLT1J1 LTR MaLR 17 331 -115 44265 39 1 1 chr1 106064884 106071038 -136593315 - L1PA3 LINE L1 -3 6152 1 473 238 9 9 chr1 106071510 106071615 -136592738 + L2 LINE L2 3168 3272 0 1691 218 11 16 chr1 106071872 106072239 -136592114 + MLT1A1 LTR MaLR 1 365 0 180 320 27 0 chr1 106073196 106073271 -136591082 + MIR SINE MIR 185 261 -1 180 293 53 27 chr1 106074431 106074506 -136589847 - L3 LINE CR1 -130 1447 1371 26 19 0 58 chr1 106075210 106075262 -136589091 + AT_rich Low_complexity Low_complexity 1 49 0 271 200 20 0 chr1 106075680 106075730 -136588623 + MER5A DNA MER1_type 2 52 -137 1530 156 103 14 chr1 106075912 106076194 -136588159 + AluJo SINE Alu 1 307 -5 190 285 95 95 chr1 106076720 106076835 -136587518 + L2 LINE L2 3136 3253 -19 7706 18 3 4 chr1 106076835 106078435 -136585918 + L1PA3 LINE L1 4557 6155 0 190 285 95 95 chr1 106078435 106078456 -136585897 + L2 LINE L2 3252 3272 0 1847 192 29 5 chr1 106078725 106079141 -136585212 - L1PB4 LINE L1 -1 6857 6432 1864 184 47 24 chr1 106079141 106079680 -136584673 + MLT2A2 LTR ERVL 2 546 -8 13758 200 25 25 chr1 106079683 106084188 -136580165 - L1PB4 LINE L1 -420 6438 1917 605 349 10 5 chr1 106084197 106084392 -136579961 - L1PB4 LINE L1 -5965 884 689 1674 290 15 17 chr1 106084696 106085175 -136579178 - L1PB4 LINE L1 -6362 487 10 244 379 11 11 chr1 106085336 106085423 -136578930 + L2 LINE L2 3141 3227 -45 750 313 65 0 chr1 106086039 106086285 -136578068 + MIR SINE MIR 1 262 0 283 325 122 16 chr1 106086814 106086937 -136577416 + MIR SINE MIR 35 170 -92 208 151 19 19 chr1 106087192 106087245 -136577108 + GA-rich Low_complexity Low_complexity 2 54 0 181 313 12 25 chr1 106090075 106090155 -136574198 + MIR SINE MIR 66 144 -118 1112 199 42 0 chr1 106090331 106090567 -136573786 + MIR SINE MIR 16 261 -1 1932 140 36 0 chr1 106090717 106090996 -136573357 - AluSx SINE Alu -23 289 1 21 82 0 0 chr1 106091601 106091650 -136572703 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr1 106091800 106091821 -136572532 + AT_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr1 106092079 106092109 -136572244 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 707 270 89 47 chr1 106092791 106092877 -136571476 + L1ME LINE L1 2 83 -5987 180 0 0 0 chr1 106092877 106092897 -136571456 + (CAA)n Simple_repeat Simple_repeat 2 21 0 707 270 89 47 chr1 106092897 106093258 -136571095 + L1ME LINE L1 83 468 -5602 230 162 0 0 chr1 106093270 106093307 -136571046 - THE1C LTR MaLR 0 428 392 973 61 0 15 chr1 106093307 106093615 -136570738 + L1PA8 LINE L1 6037 6172 0 215 30 0 30 chr1 106093615 106093648 -136570705 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 1861 139 41 24 chr1 106093651 106093992 -136570361 - THE1C LTR MaLR -27 401 1 321 281 56 50 chr1 106095336 106095496 -136568857 - MIR SINE MIR -11 251 91 624 288 50 108 chr1 106095496 106096035 -136568318 + LTR67 LTR ERVL 19 526 -31 1847 168 69 0 chr1 106096133 106096497 -136567856 + MLT1B LTR MaLR 1 389 -1 2323 46 46 0 chr1 106097160 106097445 -136566908 + AluY SINE Alu 13 310 -1 352 285 20 53 chr1 106097495 106097646 -136566707 - L2 LINE L2 0 3313 3168 227 322 11 0 chr1 106098484 106098574 -136565779 - L1ME4a LINE L1 -84 6037 5947 332 309 28 6 chr1 106099155 106099333 -136565020 + L1ME3A LINE L1 5767 5948 -222 24 0 0 0 chr1 106099553 106099577 -136564776 + AT_rich Low_complexity Low_complexity 1 24 0 308 237 245 7 chr1 106099587 106099726 -136564627 + L3 LINE CR1 1239 1410 -167 234 361 66 0 chr1 106100082 106100204 -136564149 + L3 LINE CR1 1414 1543 -34 265 250 0 0 chr1 106100217 106100273 -136564080 - L2 LINE L2 0 3272 3217 348 274 28 19 chr1 106100478 106100584 -136563769 - MIR3 SINE MIR -3 205 99 214 380 0 13 chr1 106101254 106101333 -136563020 + L2 LINE L2 2560 2637 -677 1574 327 119 41 chr1 106101460 106103438 -136560915 + L2 LINE L2 1237 3272 0 795 288 48 13 chr1 106103915 106104224 -136560129 - L1MC4a LINE L1 -1768 6040 5721 23 0 0 0 chr1 106104286 106104309 -136560044 + AT_rich Low_complexity Low_complexity 1 23 0 533 268 91 5 chr1 106104319 106104517 -136559836 - L1MC4a LINE L1 -2277 5531 5317 448 275 42 21 chr1 106104519 106104708 -136559645 - L1MC4a LINE L1 -1463 4683 4491 21 36 0 0 chr1 106105425 106105453 -136558900 + AT_rich Low_complexity Low_complexity 1 28 0 295 212 88 44 chr1 106105545 106105658 -136558695 - HAL1b LINE L1 -1025 323 206 1361 272 105 16 chr1 106106935 106107362 -136556991 - MER115 DNA AcHobo 0 693 229 185 73 0 73 chr1 106108548 106108589 -136555764 + (T)n Simple_repeat Simple_repeat 1 38 0 210 167 0 0 chr1 106111112 106111148 -136553205 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr1 106111795 106111817 -136552536 + AT_rich Low_complexity Low_complexity 1 22 0 194 140 0 100 chr1 106114923 106114973 -136549380 + MIR SINE MIR 216 260 -2 1741 172 30 0 chr1 106115238 106115534 -136548819 - AluJb SINE Alu -7 305 1 274 336 43 64 chr1 106115914 106116054 -136548299 + MIR3 SINE MIR 39 175 -33 2216 123 22 27 chr1 106116138 106116504 -136547849 + THE1B LTR MaLR 1 364 0 608 350 17 0 chr1 106116762 106116996 -136547357 - MIR SINE MIR -11 251 14 204 159 0 23 chr1 106118616 106118660 -136545693 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 908 209 0 6 chr1 106119561 106119724 -136544629 - FRAM SINE Alu -3 163 2 1877 133 25 7 chr1 106119980 106120258 -136544095 + AluJb SINE Alu 5 287 -25 385 349 23 28 chr1 106120951 106121166 -136543187 - L2 LINE L2 -538 2776 2563 894 228 82 26 chr1 106121170 106121402 -136542951 + MIR SINE MIR 15 259 -3 1982 130 14 7 chr1 106122238 106122530 -136541823 - AluSx SINE Alu -14 298 5 461 304 34 20 chr1 106122837 106122985 -136541368 - L2 LINE L2 -19 3294 3145 298 262 95 0 chr1 106123321 106123405 -136540948 - MLT1J LTR MaLR -415 96 5 397 331 184 11 chr1 106123494 106123847 -136540506 - L1ME LINE L1 -351 5753 5340 1527 171 32 0 chr1 106124624 106124875 -136539478 + AluJb SINE Alu 1 259 -53 603 280 90 41 chr1 106125111 106125163 -136539190 + L2 LINE L2 3028 3076 -237 2470 30 40 0 chr1 106125163 106125461 -136538892 + AluY SINE Alu 1 310 -1 603 280 90 41 chr1 106125461 106125676 -136538677 + L2 LINE L2 3076 3308 -5 575 319 75 7 chr1 106125682 106125961 -136538392 - MLT1I LTR MaLR -49 360 63 201 434 12 0 chr1 106126928 106127011 -136537342 - L2 LINE L2 -87 3185 3102 4085 118 8 61 chr1 106127061 106127446 -136536907 + L1MC1 LINE L1 5353 5682 -651 1801 163 0 0 chr1 106127446 106127728 -136536625 - AluSx SINE Alu -30 282 1 4085 118 8 61 chr1 106127728 106128079 -136536274 + L1MC1 LINE L1 5682 6050 -283 1597 143 18 11 chr1 106128129 106128408 -136535945 + L1MC1 LINE L1 6053 6333 0 2443 126 6 6 chr1 106128725 106129089 -136535264 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr1 106129212 106129244 -136535109 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr1 106129418 106129445 -136534908 + AT_rich Low_complexity Low_complexity 1 27 0 978 282 94 47 chr1 106131926 106133105 -136531248 - L1ME LINE L1 -984 5145 3911 474 205 0 0 chr1 106133208 106133291 -136531062 - FRAM/FAM SINE Alu -94 82 1 246 284 88 77 chr1 106133291 106134169 -136530184 - L1ME LINE L1 -3012 3117 2231 482 167 33 11 chr1 106135084 106135174 -136529179 + MLT1D LTR MaLR 1 92 -413 1648 294 66 55 chr1 106135177 106136187 -136528166 - L1ME LINE L1 -5097 1022 2 434 345 82 0 chr1 106136805 106136999 -136527354 - MIR SINE MIR -16 246 37 1116 230 58 140 chr1 106137121 106137707 -136526646 + MER77 LTR ERV1 41 578 -27 244 261 141 0 chr1 106138019 106138111 -136526242 - MER104 DNA Tc2 -70 110 6 13780 127 20 60 chr1 106138170 106139078 -136525275 + Tigger1 DNA MER2_type 1 943 -1475 1944 125 3 17 chr1 106139078 106139396 -136524957 + AluSx SINE Alu 1 314 0 13780 127 20 60 chr1 106139396 106141002 -136523351 + Tigger1 DNA MER2_type 943 2417 -1 239 376 8 8 chr1 106141192 106141309 -136523044 - MIR SINE MIR -120 142 26 737 200 0 21 chr1 106141357 106141502 -136522851 + FLAM_C SINE Alu 1 142 -1 187 356 198 12 chr1 106141645 106141974 -136522379 - L2 LINE L2 -816 2498 2109 1147 233 107 68 chr1 106141995 106142480 -136521873 - MLT1H LTR MaLR -45 504 1 352 222 0 0 chr1 106142873 106142945 -136521408 - LTR16B LTR ERVL 0 464 393 192 97 0 0 chr1 106145085 106145116 -136519237 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2535 57 0 0 chr1 106145390 106145689 -136518664 - AluY SINE Alu -12 299 1 203 349 45 0 chr1 106145813 106145879 -136518474 + MIR SINE MIR 32 100 -162 1770 162 3 3 chr1 106145904 106146188 -136518165 + AluJb SINE Alu 1 284 -28 212 57 0 29 chr1 106146188 106146223 -136518130 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 320 288 34 51 chr1 106146241 106146359 -136517994 - L2 LINE L2 -5 3308 3193 1767 83 0 12 chr1 106146798 106147040 -136517313 - AluY SINE Alu 0 311 73 1832 136 0 14 chr1 106147051 106147345 -136517008 - L1PA16 LINE L1 -106 6060 5771 2392 81 13 0 chr1 106147345 106147654 -136516699 - AluSq SINE Alu 0 313 1 202 239 0 0 chr1 106148858 106148904 -136515449 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 844 153 15 0 chr1 106149701 106149832 -136514521 + FLAM_C SINE Alu 1 133 0 2377 92 0 0 chr1 106149894 106150199 -136514154 + AluSg SINE Alu 1 305 -5 237 299 115 45 chr1 106150777 106150934 -136513419 - MIR3 SINE MIR -1 207 40 994 101 0 0 chr1 106151391 106151530 -136512823 - AluY SINE Alu 0 311 173 1727 173 36 7 chr1 106151880 106152050 -136512303 - AluJo SINE Alu -2 310 126 198 0 0 0 chr1 106152050 106152072 -136512281 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1727 173 36 7 chr1 106152072 106152202 -136512151 - AluJo SINE Alu -186 126 1 1295 274 224 9 chr1 106152251 106153013 -136511340 - L2 LINE L2 0 3313 2375 518 306 123 50 chr1 106153064 106153423 -136510930 - HAL1 LINE L1 -636 1871 1487 2233 45 368 164 chr1 106153425 106153915 -136510438 + LTR12 LTR ERV1 1 634 -80 11256 23 1 0 chr1 106153915 106156007 -136508346 - L1PA3 LINE L1 0 6155 4061 2233 45 368 164 chr1 106156007 106156109 -136508244 + LTR12 LTR ERV1 634 714 0 985 299 106 37 chr1 106156116 106156795 -136507558 - HAL1 LINE L1 -1027 1480 755 333 0 0 0 chr1 106159723 106159760 -136504593 + (TG)n Simple_repeat Simple_repeat 2 38 0 373 161 0 0 chr1 106159912 106159968 -136504385 - LTR29 LTR ERV1 0 622 567 * 1557 157 203 16 chr1 106159958 106160333 -136504020 - LTR29 LTR ERV1 -177 445 1 237 108 0 0 chr1 106160436 106160473 -136503880 + (TG)n Simple_repeat Simple_repeat 2 38 0 1480 225 4 4 chr1 106160476 106160756 -136503597 - AluJb SINE Alu -31 281 2 5331 70 133 0 chr1 106160972 106161701 -136502652 + LTR12 LTR ERV1 1 826 0 20883 103 4 6 chr1 106161725 106164645 -136499708 + HERV9 LTR ERV1 58 2972 -5427 1294 134 5 22 chr1 106164644 106164867 -136499486 + HERV9 LTR ERV1 4756 4974 -3425 * 2250 178 111 74 chr1 106164835 106165673 -136498680 + Harlequin LTR ERV1 841 1709 -5187 * 4581 86 29 0 chr1 106165672 106166297 -136498056 + Harlequin LTR ERV1 7757 8399 0 226 269 0 0 chr1 106166297 106166349 -136498004 + LTR30 LTR ERV1 1 52 -670 1410 92 40 134 chr1 106166353 106166682 -136497671 + LTR12 LTR ERV1 57 2025 -413 284 189 0 0 chr1 106166682 106166735 -136497618 + LTR30 LTR ERV1 544 596 -126 15062 111 10 21 chr1 106166736 106169085 -136495268 - MER61C-int LTR ERV1 -912 4305 1983 4111 144 92 112 chr1 106169075 106170334 -136494019 - MER61C-int LTR ERV1 -3577 1640 407 * 1274 172 3 78 chr1 106170346 106170642 -136493711 - MER61C-int LTR ERV1 -4763 454 181 736 204 13 33 chr1 106170741 106170893 -136493460 - MER61C-int LTR ERV1 -5065 152 4 1216 148 39 39 chr1 106170895 106171124 -136493229 - MER61C LTR ERV1 0 434 206 * 1558 141 94 7 chr1 106171120 106171417 -136492936 - LTR23 LTR ERV1 -114 323 1 1391 163 74 115 chr1 106173052 106173487 -136490866 - MER96B DNA MER1_type? 0 417 1 3564 186 61 46 chr1 106173580 106174892 -136489461 + L1MB8 LINE L1 4834 6166 -12 195 42 0 0 chr1 106175126 106175150 -136489203 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 443 181 0 0 chr1 106175150 106175244 -136489109 - L1MA8 LINE L1 -10 6281 6188 987 113 20 0 chr1 106175244 106175395 -136488958 + L1MA7 LINE L1 5741 5894 -397 23 0 0 0 chr1 106175533 106175556 -136488797 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr1 106175775 106175804 -136488549 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 451 303 155 40 chr1 106176024 106176404 -136487949 + L3 LINE CR1 1154 1577 0 195 69 0 0 chr1 106176560 106176589 -136487764 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 246 335 47 21 chr1 106178795 106179031 -136485322 - HAL1 LINE L1 -7 2500 2259 750 163 16 0 chr1 106179104 106179227 -136485126 + FLAM_C SINE Alu 1 125 -18 30 0 0 0 chr1 106179227 106179257 -136485096 + AT_rich Low_complexity Low_complexity 1 30 0 244 296 9 37 chr1 106179556 106179664 -136484689 + MLT1K LTR MaLR 484 588 0 2391 75 0 0 chr1 106179922 106180214 -136484139 - AluSq SINE Alu -16 297 6 346 265 20 31 chr1 106180430 106180528 -136483825 - MLT1K LTR MaLR -229 359 263 1055 246 103 47 chr1 106180538 106181074 -136483279 - L1MDa LINE L1 -4697 1843 1278 288 298 76 23 chr1 106181076 106181207 -136483146 + MIR SINE MIR 61 198 -64 508 200 53 0 chr1 106181260 106181389 -136482964 - AluJb SINE Alu 0 328 195 768 156 39 0 chr1 106181569 106181697 -136482656 - AluSg/x SINE Alu -4 308 176 181 331 50 25 chr1 106182110 106182231 -136482122 + L2 LINE L2 3190 3313 0 1463 245 109 29 chr1 106182380 106182900 -136481453 - MLT1F1 LTR MaLR -1 566 1 274 202 137 32 chr1 106182925 106183049 -136481304 - L1ME4a LINE L1 -1 6120 5984 1700 167 3 55 chr1 106183248 106183559 -136480794 - AluJo SINE Alu -17 295 1 198 269 154 13 chr1 106183936 106184014 -136480339 - MIR SINE MIR -96 166 78 609 252 0 0 chr1 106184521 106184636 -136479717 + FLAM_A SINE Alu 2 116 -17 1576 234 103 42 chr1 106184886 106185437 -136478916 - L1MD2 LINE L1 -2 6357 5773 25 0 0 0 chr1 106186246 106186271 -136478082 + AT_rich Low_complexity Low_complexity 1 25 0 7677 22 1 0 chr1 106186359 106187655 -136476698 + L1PA3 LINE L1 4859 6155 0 538 269 180 17 chr1 106187702 106188218 -136476135 + L1ME4a LINE L1 5271 5882 -239 208 234 32 64 chr1 106189857 106189951 -136474402 - L2 LINE L2 -129 3184 3094 338 211 0 11 chr1 106190569 106190664 -136473689 + GA-rich Low_complexity Low_complexity 3 96 0 317 325 0 16 chr1 106190668 106190791 -136473562 + A-rich Low_complexity Low_complexity 5 125 0 1168 184 87 0 chr1 106194352 106194559 -136469794 - AluJb SINE Alu -12 300 76 369 0 0 0 chr1 106195627 106195668 -136468685 + (TG)n Simple_repeat Simple_repeat 2 42 0 755 222 0 45 chr1 106195668 106195844 -136468509 - AluJb SINE Alu -31 281 114 398 20 20 0 chr1 106195993 106196044 -136468309 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 510 149 0 0 chr1 106196255 106196342 -136468011 + (TG)n Simple_repeat Simple_repeat 2 88 0 324 0 0 0 chr1 106196342 106196378 -136467975 + (TA)n Simple_repeat Simple_repeat 2 37 0 1932 155 0 10 chr1 106196471 106196775 -136467578 + AluJb SINE Alu 1 301 -11 1716 173 0 24 chr1 106199085 106199374 -136464979 - AluJo SINE Alu -26 286 5 773 285 29 21 chr1 106199826 106200068 -136464285 + MIR SINE MIR 15 258 -4 234 309 116 44 chr1 106200146 106200327 -136464026 + L2 LINE L2 3120 3313 0 209 337 120 23 chr1 106200451 106200626 -136463727 - L3b LINE CR1 -141 1442 1251 201 39 0 0 chr1 106201943 106201969 -136462384 + (CAT)n Simple_repeat Simple_repeat 2 27 0 2483 300 64 43 chr1 106203167 106204794 -136459559 + L1ME LINE L1 10 1593 -4622 2203 149 65 7 chr1 106204802 106205205 -136459148 + MSTA LTR MaLR 1 426 -2 8723 171 41 28 chr1 106205211 106206838 -136457515 + MSTA-int LTR MaLR 5 1651 0 2304 143 59 7 chr1 106206838 106207243 -136457110 + MSTA LTR MaLR 1 426 -2 2054 249 41 44 chr1 106207256 106208544 -136455809 + L1ME LINE L1 1677 2936 -3279 444 306 168 40 chr1 106208552 106208950 -136455403 + L1ME LINE L1 4180 4628 -1587 430 192 34 20 chr1 106208967 106209113 -136455240 + GA-rich Low_complexity Low_complexity 3 150 0 571 357 79 5 chr1 106209114 106209506 -136454847 + L1ME LINE L1 4652 5072 -1143 3625 168 84 27 chr1 106209687 106210442 -136453911 + L1MC3 LINE L1 6918 7725 -60 2011 183 19 6 chr1 106210442 106210802 -136453551 - MLT1A1 LTR MaLR 0 365 1 3625 168 84 27 chr1 106210802 106210866 -136453487 + L1MC3 LINE L1 7725 7784 -1 270 282 21 25 chr1 106210861 106211156 -136453197 + L1ME LINE L1 5260 5553 -756 * 1493 159 189 32 chr1 106211400 106211770 -136452583 + MSTA LTR MaLR 1 428 0 1565 170 103 0 chr1 106211846 106212128 -136452225 - AluJb SINE Alu -1 311 1 2420 59 7 16 chr1 106212284 106212591 -136451762 + AluY SINE Alu 1 304 -7 253 264 55 0 chr1 106212591 106212682 -136451671 + Charlie2b DNA MER1_type 560 655 -2127 857 166 44 0 chr1 106212784 106212965 -136451388 + Charlie2a DNA MER1_type 1478 1666 -1196 277 265 51 0 chr1 106212970 106213068 -136451285 + Charlie2a DNA MER1_type 2716 2818 -44 270 248 1 10 chr1 106213069 106213175 -136451178 + L1ME LINE L1 5807 5910 -329 900 285 155 44 chr1 106213237 106213759 -136450594 - L2 LINE L2 -16 3297 2738 1321 269 82 27 chr1 106214080 106215194 -136449159 + L1ME3A LINE L1 3573 4624 -1546 2138 90 29 0 chr1 106215194 106215498 -136448855 + AluY SINE Alu 1 312 0 1321 269 82 27 chr1 106215498 106216769 -136447584 + L1ME3A LINE L1 4624 6158 -12 21 100 0 0 chr1 106216814 106216884 -136447469 + AT_rich Low_complexity Low_complexity 1 70 0 1888 159 33 49 chr1 106217045 106217436 -136446917 - MLT1B LTR MaLR 0 390 6 1906 152 50 17 chr1 106218613 106218975 -136445378 + THE1C LTR MaLR 2 375 0 182 211 84 70 chr1 106219025 106219096 -136445257 + L2 LINE L2 3011 3082 -190 258 210 49 37 chr1 106219171 106219252 -136445101 + L2 LINE L2 3195 3276 -37 21 0 0 0 chr1 106220875 106220896 -136443457 + AT_rich Low_complexity Low_complexity 1 21 0 188 229 0 0 chr1 106225623 106225658 -136438695 + MIR3 SINE MIR 122 156 -52 1103 168 39 0 chr1 106225745 106225948 -136438405 - AluJo SINE Alu -15 297 87 333 0 0 0 chr1 106226156 106226193 -136438160 + (CA)n Simple_repeat Simple_repeat 2 38 0 2081 115 7 7 chr1 106227864 106228152 -136436201 - AluSx SINE Alu -20 292 5 669 189 37 52 chr1 106228230 106228421 -136435932 - MER53 DNA DNA -1 188 1 218 352 55 0 chr1 106229074 106229165 -136435188 - L2 LINE L2 -53 3219 3124 624 288 22 5 chr1 106232239 106232423 -136431930 + MIR3 SINE MIR 16 202 -6 868 215 15 31 chr1 106232724 106232919 -136431434 + MER20 DNA MER1_type 24 215 -4 2322 101 0 0 chr1 106235270 106235568 -136428785 + AluY SINE Alu 1 298 -13 3742 133 43 129 chr1 106236671 106237570 -136426783 - LTR12 LTR ERV1 0 826 5 2944 154 16 29 chr1 106237584 106238196 -136426157 - pTR5 LTR ERV1 -1092 1346 743 1619 271 110 56 chr1 106238712 106239193 -136425160 + HAL1 LINE L1 33 486 -2021 932 173 12 0 chr1 106239193 106239355 -136424998 + U1 snRNA snRNA 2 165 0 1619 271 110 56 chr1 106239355 106240025 -136424328 + HAL1 LINE L1 486 1247 -1260 30 0 0 0 chr1 106240050 106240080 -136424273 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 106240301 106240329 -136424024 + AT_rich Low_complexity Low_complexity 1 28 0 2201 244 34 28 chr1 106240390 106241039 -136423314 - L1ME1 LINE L1 -44 6122 5470 1149 263 101 35 chr1 106241382 106241868 -136422485 + LTR33 LTR ERVL 4 521 0 386 242 85 36 chr1 106241880 106242045 -136422308 + MLT1L LTR MaLR 383 555 -60 200 265 88 49 chr1 106242705 106242807 -136421546 - MIR SINE MIR 0 262 157 2113 152 28 3 chr1 106244078 106244433 -136419920 - THE1B LTR MaLR 0 364 1 483 351 50 12 chr1 106244435 106244677 -136419676 + MIR SINE MIR 12 262 0 1906 212 37 8 chr1 106245117 106245499 -136418854 + MLT1F1 LTR MaLR 128 520 -47 26 30 0 0 chr1 106245540 106245573 -136418780 + AT_rich Low_complexity Low_complexity 1 33 0 2374 68 0 7 chr1 106245904 106246198 -136418155 + AluY SINE Alu 3 294 -17 180 353 24 12 chr1 106246573 106246658 -136417695 - MIR SINE MIR -80 128 43 292 348 103 19 chr1 106247418 106247573 -136416780 - MIR SINE MIR -74 188 21 282 372 70 6 chr1 106250273 106250445 -136413908 - MER91A DNA MER1_type 0 196 14 227 189 0 0 chr1 106250456 106250493 -136413860 + MIR SINE MIR 197 233 -29 279 54 0 0 chr1 106250511 106250548 -136413805 + (CAT)n Simple_repeat Simple_repeat 2 38 0 2223 171 18 71 chr1 106252666 106253156 -136411197 + MLT2C2 LTR ERVL 1 464 0 605 329 13 30 chr1 106253201 106253435 -136410918 + MIR SINE MIR 20 249 -13 284 193 35 0 chr1 106253676 106253733 -136410620 - MER103 DNA DNA -46 120 62 451 287 45 0 chr1 106253758 106253915 -136410438 + MLT1I LTR MaLR 1 164 -245 42603 35 23 4 chr1 106254067 106256957 -136407396 - L1PA3 LINE L1 0 6155 3321 2840 13 0 0 chr1 106256957 106257268 -136407085 - AluYa5 SINE Alu 0 311 1 42603 35 23 4 chr1 106257268 106260408 -136403945 - L1PA3 LINE L1 -2834 3321 10 323 219 49 12 chr1 106260445 106260527 -136403826 + MLT1I LTR MaLR 316 400 -9 2104 175 35 29 chr1 106260606 106261155 -136403198 + MLT2A2 LTR ERVL 1 554 0 196 364 27 9 chr1 106261447 106261557 -136402796 + L2 LINE L2 2945 3056 -216 21 0 0 0 chr1 106261647 106261668 -136402685 + AT_rich Low_complexity Low_complexity 1 21 0 656 235 45 6 chr1 106261839 106262018 -136402335 - MIR SINE MIR -4 258 73 231 246 111 79 chr1 106262787 106262913 -136401440 - L2 LINE L2 -9 3304 3175 224 403 82 8 chr1 106263258 106263392 -136400961 - MIR3 SINE MIR -63 145 2 242 200 46 15 chr1 106263927 106263992 -136400361 + MLT1K LTR MaLR 515 581 -7 383 240 52 10 chr1 106264498 106264594 -136399759 + MIR SINE MIR 6 105 -157 456 273 6 37 chr1 106264635 106264796 -136399557 - MLT1H LTR MaLR -7 542 387 885 272 94 21 chr1 106264938 106265225 -136399128 - MLT1H LTR MaLR -241 308 1 446 228 0 0 chr1 106265225 106265317 -136399036 + MIR SINE MIR 140 231 -31 288 372 47 7 chr1 106265516 106265664 -136398689 + MIR3 SINE MIR 35 188 -20 1897 158 66 17 chr1 106267741 106268088 -136396265 + THE1B LTR MaLR 1 364 0 745 213 0 0 chr1 106268424 106268574 -136395779 + L1PA16 LINE L1 6017 6166 0 2209 158 54 19 chr1 106268585 106269067 -136395286 - L1MB2 LINE L1 -25 6146 5682 316 211 53 13 chr1 106269230 106269306 -136395047 + MLT1K LTR MaLR 510 588 0 21 36 0 0 chr1 106270021 106270049 -136394304 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 106270538 106270562 -136393791 + AT_rich Low_complexity Low_complexity 1 24 0 835 149 0 0 chr1 106270915 106271036 -136393317 + AluJo SINE Alu 6 126 -186 194 284 126 55 chr1 106271195 106271322 -136393031 - L2 LINE L2 0 3272 3137 4588 262 117 37 chr1 106273496 106274969 -136389384 + L1MEc LINE L1 54 1743 -4653 6259 27 1 0 chr1 106274969 106275704 -136388649 + L1PA4 LINE L1 5419 6154 -1 4588 262 117 37 chr1 106275704 106276320 -136388033 + L1MEc LINE L1 1743 2309 -4087 2023 243 100 16 chr1 106276318 106276998 -136387355 + L1MEc LINE L1 3668 4404 -1811 * 523 229 25 0 chr1 106277026 106277148 -136387205 + L1MEc LINE L1 4686 4810 -1405 1059 157 67 0 chr1 106277170 106277380 -136386973 - L1MC3 LINE L1 -657 7128 6905 977 169 7 0 chr1 106277432 106277580 -136386773 + AluJo SINE Alu 134 282 -30 1839 215 77 27 chr1 106277601 106277627 -136386726 + L1MEc LINE L1 4816 4839 -1427 2036 139 19 45 chr1 106277627 106278001 -136386352 - THE1B LTR MaLR 0 364 1 1839 215 77 27 chr1 106278001 106278611 -136385742 + L1MEc LINE L1 4839 5477 -789 507 118 80 14 chr1 106278614 106279122 -136385231 + (TA)n Simple_repeat Simple_repeat 1 541 0 255 110 105 0 chr1 106279135 106279382 -136384971 + (TA)n Simple_repeat Simple_repeat 1 273 0 1270 255 127 21 chr1 106279391 106280045 -136384308 + L1MB8 LINE L1 5397 6310 -24 237 122 0 0 chr1 106280366 106280407 -136383946 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 -5 1305 20 0 0 chr1 106280407 106280559 -136383794 - L1PA4 LINE L1 -11 6144 5993 237 122 0 0 chr1 106280559 106280566 -136383787 + (TTTTTA)n Simple_repeat Simple_repeat 44 50 0 26 74 0 0 chr1 106280964 106281018 -136383335 + AT_rich Low_complexity Low_complexity 1 54 0 7771 172 71 104 chr1 106281527 106281990 -136382363 - L1MC3 LINE L1 -18 7767 7290 2411 55 0 10 chr1 106281990 106282298 -136382055 - AluY SINE Alu -6 305 1 7771 172 71 104 chr1 106282298 106283842 -136380511 - L1MC3 LINE L1 -495 7290 5848 2254 104 30 0 chr1 106283842 106284177 -136380176 + L1PA13 LINE L1 5814 6158 -5 7771 172 71 104 chr1 106284177 106284535 -136379818 - L1MC3 LINE L1 -1937 5848 5480 2125 271 17 27 chr1 106284528 106285431 -136378922 - L1MCb LINE L1 -3318 3246 2388 * 4607 139 13 97 chr1 106285427 106286447 -136377906 - L1MA9 LINE L1 0 7272 6339 1385 104 30 24 chr1 106286447 106286805 -136377548 - MSTA LTR MaLR 0 428 1 5186 167 28 56 chr1 106286805 106287868 -136376485 - L1MA9 LINE L1 -763 6343 5252 1983 140 32 69 chr1 106287868 106288246 -136376107 + THE1B LTR MaLR 1 364 0 11312 104 15 0 chr1 106288255 106289812 -136374541 + THE1B-int LTR MaLR 1 1580 0 1769 164 44 33 chr1 106289812 106290172 -136374181 + THE1B LTR MaLR 1 364 0 5186 167 28 56 chr1 106290172 106290283 -136374070 - L1MA9 LINE L1 -1860 5246 5191 2506 253 82 28 chr1 106290273 106291971 -136372382 - L1MA9 LINE L1 -4562 2475 1 * 7417 35 0 0 chr1 106292009 106293023 -136371330 - L1PA4 LINE L1 -3 6152 5137 2554 38 0 3 chr1 106293023 106293341 -136371012 + L1PA4 LINE L1 4842 5158 -988 * 3084 210 163 135 chr1 106293330 106295444 -136368909 - L1MCb LINE L1 -4235 2329 46 19804 184 28 22 chr1 106296678 106303315 -136361038 - L1PA13 LINE L1 -4 6810 1 283 331 89 99 chr1 106304797 106305099 -136359254 - L3 LINE CR1 -28 1549 1251 325 232 12 12 chr1 106305196 106305278 -136359075 + MIR SINE MIR 151 232 -30 862 319 35 44 chr1 106305299 106305349 -136359004 - L3 LINE CR1 -366 1211 1162 1933 132 49 0 chr1 106305349 106305637 -136358716 - AluSx SINE Alu -10 302 1 862 319 35 44 chr1 106305637 106306019 -136358334 - L3 LINE CR1 -415 1162 783 202 370 46 0 chr1 106306095 106306203 -136358150 + MIR SINE MIR 134 246 -16 189 353 121 17 chr1 106306261 106306377 -136357976 - L3 LINE CR1 -940 637 510 443 317 124 0 chr1 106306895 106307040 -136357313 - L2 LINE L2 0 3272 3110 14028 200 37 17 chr1 106307298 106307912 -136356441 - L1PA13 LINE L1 -1765 5032 4432 2556 62 3 0 chr1 106307912 106308220 -136356133 + AluSp SINE Alu 1 309 -4 14028 200 37 17 chr1 106308220 106311482 -136352871 - L1PA13 LINE L1 -2365 4432 1083 1466 228 57 26 chr1 106311486 106311977 -136352376 + L1MC4 LINE L1 7531 8036 -6 334 226 68 7 chr1 106311981 106312127 -136352226 + L1M4 LINE L1 5191 5345 -801 329 284 43 16 chr1 106312196 106312560 -136351793 - L1MDa LINE L1 -3728 2401 2030 29 28 0 0 chr1 106312574 106312610 -136351743 + AT_rich Low_complexity Low_complexity 1 36 0 345 261 35 0 chr1 106312964 106313102 -136351251 - L1MDa LINE L1 -863 1627 1384 733 289 88 65 chr1 106313169 106313941 -136350412 - L1MDa LINE L1 -4865 1254 465 2189 114 0 0 chr1 106313965 106314277 -136350076 + AluSc SINE Alu 1 309 0 7041 56 6 0 chr1 106314277 106315471 -136348882 + L1PA7 LINE L1 4954 6152 -2 261 238 48 0 chr1 106315518 106315581 -136348772 - L1MDa LINE L1 -5798 321 256 217 170 38 19 chr1 106315925 106315978 -136348375 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 349 396 46 5 chr1 106316272 106316489 -136347864 - L1ME LINE L1 -408 5754 5529 1081 296 65 35 chr1 106317752 106318212 -136346141 - MLT1J LTR MaLR -33 478 5 31 0 0 0 chr1 106318708 106318739 -136345614 + AT_rich Low_complexity Low_complexity 1 31 0 1030 261 93 38 chr1 106318743 106319161 -136345192 + LTR16A1 LTR ERVL 17 457 0 2071 133 3 0 chr1 106319370 106319670 -136344683 + AluSq SINE Alu 1 301 -12 21 57 0 0 chr1 106319727 106319762 -136344591 + AT_rich Low_complexity Low_complexity 1 35 0 2056 92 69 12 chr1 106320941 106321276 -136343077 - L1PA10 LINE L1 -4 6164 5811 2233 104 0 19 chr1 106321503 106321819 -136342534 - AluSx SINE Alu 0 312 3 1984 224 110 88 chr1 106322063 106323248 -136341105 - L1MC4a LINE L1 -1333 6544 5334 1028 153 9 90 chr1 106323329 106323551 -136340802 + MER3 DNA MER1_type 6 209 0 242 130 0 87 chr1 106323516 106323562 -136340791 - MER3 DNA MER1_type -127 82 41 * 479 276 180 7 chr1 106323573 106324018 -136340335 - L1MC4a LINE L1 -1120 5095 4574 359 244 0 0 chr1 106324015 106324097 -136340256 - L1MC4 LINE L1 -646 7396 7315 * 423 300 86 0 chr1 106324097 106324330 -136340023 - L1MC4a LINE L1 -2299 3916 3664 616 286 36 16 chr1 106324352 106324740 -136339613 - L1MC4a LINE L1 -2747 3468 3073 197 103 69 11 chr1 106324760 106324847 -136339506 + (TTATA)n Simple_repeat Simple_repeat 3 94 0 23 0 0 0 chr1 106324860 106324883 -136339470 + AT_rich Low_complexity Low_complexity 1 23 0 900 255 107 49 chr1 106324898 106325728 -136338625 - L1MC4a LINE L1 -3159 3056 2179 608 307 49 9 chr1 106326052 106326397 -136337956 - L1MC4a LINE L1 -4727 1669 1311 536 272 168 0 chr1 106327155 106327328 -136337025 + MIR SINE MIR 12 213 -49 264 340 66 0 chr1 106327670 106327776 -136336577 + L2 LINE L2 3160 3272 0 353 218 23 23 chr1 106329402 106329489 -136334864 - MER58 DNA MER1_type -1 2419 128 1654 140 35 70 chr1 106329500 106329899 -136334454 - L1MA7 LINE L1 -2 6289 5905 534 235 0 0 chr1 106329899 106329997 -136334356 - Tigger7 DNA MER2_type 0 2491 2394 1129 213 0 0 chr1 106329998 106330195 -136334158 - Tigger7 DNA MER2_type -468 265 69 39929 56 2 1 chr1 106330297 106336176 -136328177 + L1PA5 LINE L1 267 6146 -8 186 217 253 24 chr1 106336349 106336432 -136327921 - MIR SINE MIR -49 213 112 415 292 18 9 chr1 106338452 106338565 -136325788 + L2 LINE L2 3200 3313 0 222 149 21 0 chr1 106339703 106339750 -136324603 + A-rich Low_complexity Low_complexity 2 49 0 282 252 70 35 chr1 106341340 106341455 -136322898 + MIR3 SINE MIR 73 191 -17 508 248 0 0 chr1 106341805 106341910 -136322443 - Tigger7 DNA MER2_type -626 107 3 231 167 0 0 chr1 106341910 106341952 -136322401 - L1M1 LINE L1 -396 5907 5866 * 2953 144 44 11 chr1 106341933 106342539 -136321814 - L1MA7 LINE L1 -446 5845 5219 534 254 18 0 chr1 106342551 106342665 -136321688 - MER58 DNA MER1_type -99 116 1 456 301 20 0 chr1 106343355 106343501 -136320852 - MLT1J LTR MaLR -40 471 323 1053 244 37 26 chr1 106343563 106343834 -136320519 + L1M3e LINE L1 1 274 -6756 1647 226 42 19 chr1 106343885 106344549 -136319804 + L1M3e LINE L1 1606 2294 -4743 1002 243 25 113 chr1 106344550 106344949 -136319404 + MLT1A1 LTR MaLR 1 364 -1 11771 198 54 52 chr1 106344962 106348342 -136316011 + L1MA9 LINE L1 1161 4565 -1983 1731 182 31 0 chr1 106348342 106348633 -136315720 + AluJb SINE Alu 1 300 -12 11771 198 54 52 chr1 106348633 106350596 -136313757 + L1MA9 LINE L1 4565 6523 -25 374 212 0 0 chr1 106351411 106351477 -136312876 - AluJ/FLAM SINE Alu -236 66 1 1527 138 13 105 chr1 106351529 106351834 -136312519 + AluJb SINE Alu 1 277 -35 226 286 16 0 chr1 106352172 106352235 -136312118 + MER5B DNA MER1_type 4 67 -111 523 296 37 6 chr1 106352338 106352500 -136311853 + MIR SINE MIR 1 167 -95 332 336 64 14 chr1 106352543 106352683 -136311670 - MIR SINE MIR -61 201 55 313 378 58 9 chr1 106352732 106353076 -136311277 - L2 LINE L2 -963 2351 1991 2413 142 14 67 chr1 106353533 106354039 -136310314 + L1MA6 LINE L1 5764 6242 -58 724 265 82 9 chr1 106355306 106355525 -136308828 + MIR SINE MIR 28 262 0 186 71 0 0 chr1 106355533 106355561 -136308792 + (TG)n Simple_repeat Simple_repeat 1 28 0 243 203 0 0 chr1 106356029 106356088 -136308265 + (TA)n Simple_repeat Simple_repeat 2 60 0 360 277 81 20 chr1 106357381 106357529 -136306824 + MIR SINE MIR 55 211 -51 4873 156 24 7 chr1 106357627 106358503 -136305850 - L1MA8 LINE L1 -1 6290 5400 209 286 70 80 chr1 106358700 106358899 -136305454 - L2 LINE L2 -210 3062 2866 1566 195 24 7 chr1 106359364 106359543 -136304810 - AluJb SINE Alu -9 303 116 279 79 0 0 chr1 106359543 106359581 -136304772 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1566 195 24 7 chr1 106359581 106359699 -136304654 - AluJb SINE Alu -196 116 1 1268 217 130 3 chr1 106360165 106360465 -136303888 + MER58B DNA MER1_type 4 341 0 370 264 114 7 chr1 106361288 106361428 -136302925 + MIR SINE MIR 102 256 -6 223 297 40 0 chr1 106361898 106361972 -136302381 - L2 LINE L2 -9 3304 3228 3555 113 6 17 chr1 106361995 106362388 -136301965 + L1PA14 LINE L1 5344 5731 -430 1856 148 60 35 chr1 106362388 106362754 -136301599 - THE1C LTR MaLR 0 375 1 3555 113 6 17 chr1 106362754 106362899 -136301454 + L1PA14 LINE L1 5731 5876 -285 2320 117 14 0 chr1 106362900 106363250 -136301103 + L1PA14 LINE L1 5805 6159 -2 213 313 106 28 chr1 106363292 106363471 -136300882 - L2 LINE L2 -147 3166 2974 799 316 80 35 chr1 106363474 106363850 -136300503 + LTR33 LTR ERVL 6 398 -123 771 285 29 21 chr1 106364437 106364679 -136299674 + MIR SINE MIR 15 258 -4 240 309 116 44 chr1 106364757 106364938 -136299415 + L2 LINE L2 3120 3313 0 207 337 120 23 chr1 106365062 106365237 -136299116 - L3b LINE CR1 -141 1442 1251 201 39 0 0 chr1 106366554 106366580 -136297773 + (CAT)n Simple_repeat Simple_repeat 2 27 0 2597 300 64 43 chr1 106367778 106369405 -136294948 + L1ME LINE L1 10 1593 -4622 2182 149 65 7 chr1 106369413 106369816 -136294537 + MSTA LTR MaLR 1 426 -2 8667 171 41 28 chr1 106369822 106371449 -136292904 + MSTA-int LTR MaLR 5 1651 0 2283 143 59 7 chr1 106371449 106371854 -136292499 + MSTA LTR MaLR 1 426 -2 2124 250 41 44 chr1 106371861 106373155 -136291198 + L1ME LINE L1 1671 2936 -3279 453 306 168 40 chr1 106373163 106373561 -136290792 + L1ME LINE L1 4180 4628 -1587 430 192 34 20 chr1 106373578 106373724 -136290629 + GA-rich Low_complexity Low_complexity 3 150 0 254 353 52 9 chr1 106373774 106374117 -136290236 + L1ME LINE L1 4715 5072 -1143 3680 168 84 27 chr1 106374298 106375053 -136289300 + L1MC3 LINE L1 6918 7725 -60 2000 183 19 6 chr1 106375053 106375413 -136288940 - MLT1A1 LTR MaLR 0 365 1 3680 168 84 27 chr1 106375413 106375477 -136288876 + L1MC3 LINE L1 7725 7784 -1 293 282 21 25 chr1 106375472 106375767 -136288586 + L1ME LINE L1 5260 5553 -756 * 1469 159 189 32 chr1 106376011 106376381 -136287972 + MSTA LTR MaLR 1 428 0 1543 170 103 0 chr1 106376457 106376739 -136287614 - AluJb SINE Alu -1 311 1 2383 59 7 16 chr1 106376895 106377202 -136287151 + AluY SINE Alu 1 304 -7 254 264 55 0 chr1 106377202 106377293 -136287060 + Charlie2b DNA MER1_type 560 655 -2127 873 169 44 0 chr1 106377393 106377576 -136286777 + Charlie2a DNA MER1_type 1476 1666 -1196 289 265 51 0 chr1 106377581 106377679 -136286674 + Charlie2a DNA MER1_type 2716 2818 -44 263 243 1 32 chr1 106377680 106377786 -136286567 + L1ME LINE L1 5807 5910 -329 896 285 155 44 chr1 106377848 106378370 -136285983 - L2 LINE L2 -16 3297 2738 1354 271 82 27 chr1 106378691 106379805 -136284548 + L1ME3A LINE L1 3573 4624 -1546 2101 90 29 0 chr1 106379805 106380109 -136284244 + AluY SINE Alu 1 312 0 1354 271 82 27 chr1 106380109 106381380 -136282973 + L1ME3A LINE L1 4624 6158 -12 21 100 0 0 chr1 106381425 106381495 -136282858 + AT_rich Low_complexity Low_complexity 1 70 0 1878 159 33 49 chr1 106381656 106382047 -136282306 - MLT1B LTR MaLR 0 390 6 1885 152 50 17 chr1 106383224 106383586 -136280767 + THE1C LTR MaLR 2 375 0 257 210 49 37 chr1 106383782 106383863 -136280490 + L2 LINE L2 3195 3276 -37 21 0 0 0 chr1 106385486 106385507 -136278846 + AT_rich Low_complexity Low_complexity 1 21 0 185 229 0 0 chr1 106390234 106390269 -136274084 + MIR3 SINE MIR 122 156 -52 1086 168 39 0 chr1 106390356 106390559 -136273794 - AluJo SINE Alu -15 297 87 333 0 0 0 chr1 106390767 106390804 -136273549 + (CA)n Simple_repeat Simple_repeat 2 38 0 2051 115 7 7 chr1 106392475 106392763 -136271590 - AluSx SINE Alu -20 292 5 678 189 37 52 chr1 106392841 106393032 -136271321 - MER53 DNA DNA -1 188 1 215 352 55 0 chr1 106393685 106393776 -136270577 - L2 LINE L2 -53 3219 3124 626 288 22 5 chr1 106396850 106397034 -136267319 + MIR3 SINE MIR 16 202 -6 800 215 15 31 chr1 106397335 106397530 -136266823 + MER20 DNA MER1_type 24 215 -4 2339 101 0 0 chr1 106399881 106400179 -136264174 + AluY SINE Alu 1 298 -13 3768 135 43 129 chr1 106401282 106402181 -136262172 - LTR12 LTR ERV1 0 826 5 2741 154 16 29 chr1 106402195 106402807 -136261546 - pTR5 LTR ERV1 -1092 1346 743 1279 267 112 57 chr1 106403323 106403804 -136260549 + HAL1 LINE L1 33 486 -2021 936 173 12 0 chr1 106403804 106403966 -136260387 + U1 snRNA snRNA 2 165 0 1279 267 112 57 chr1 106403966 106404636 -136259717 + HAL1 LINE L1 486 1247 -1260 30 0 0 0 chr1 106404661 106404691 -136259662 + AT_rich Low_complexity Low_complexity 1 30 0 352 277 81 20 chr1 106404823 106404971 -136259382 + MIR SINE MIR 55 211 -51 4573 157 23 7 chr1 106405069 106405946 -136258407 - L1MA8 LINE L1 -1 6290 5400 225 311 68 78 chr1 106406135 106406341 -136258012 - L2 LINE L2 -203 3069 2866 1622 195 24 7 chr1 106406806 106406985 -136257368 - AluJb SINE Alu -9 303 116 279 79 0 0 chr1 106406985 106407023 -136257330 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1622 195 24 7 chr1 106407023 106407141 -136257212 - AluJb SINE Alu -196 116 1 1218 220 130 3 chr1 106407607 106407907 -136256446 + MER58B DNA MER1_type 4 341 0 359 264 114 7 chr1 106408730 106408870 -136255483 + MIR SINE MIR 102 256 -6 220 297 40 0 chr1 106409340 106409414 -136254939 - L2 LINE L2 -9 3304 3228 3368 113 6 17 chr1 106409437 106409830 -136254523 + L1PA14 LINE L1 5344 5731 -430 1875 148 60 35 chr1 106409830 106410196 -136254157 - THE1C LTR MaLR 0 375 1 3368 113 6 17 chr1 106410196 106410341 -136254012 + L1PA14 LINE L1 5731 5876 -285 2334 114 14 0 chr1 106410342 106410692 -136253661 + L1PA14 LINE L1 5805 6159 -2 209 302 112 34 chr1 106410734 106410913 -136253440 - L2 LINE L2 -147 3166 2974 690 314 80 35 chr1 106410916 106411292 -136253061 + LTR33 LTR ERVL 6 398 -123 1507 184 83 12 chr1 106411686 106412022 -136252331 - MLT1A1 LTR MaLR 0 365 6 1143 308 58 25 chr1 106412098 106412766 -136251587 + ERVL LTR ERVL 2241 2930 -2724 219 36 0 0 chr1 106412779 106412807 -136251546 + (CA)n Simple_repeat Simple_repeat 1 28 0 1550 207 49 41 chr1 106412930 106413348 -136251005 + MSTC LTR MaLR 8 428 0 1159 329 57 24 chr1 106413370 106414720 -136249633 + ERVL LTR ERVL 3589 5029 -735 21 0 0 0 chr1 106414816 106414837 -136249516 + AT_rich Low_complexity Low_complexity 1 21 0 380 321 149 36 chr1 106414842 106415366 -136248987 - L2 LINE L2 -320 2952 2292 277 350 25 31 chr1 106416028 106416191 -136248162 - MLT1K LTR MaLR -341 247 86 4830 73 16 5 chr1 106416225 106417115 -136247238 - L1PA8 LINE L1 -574 5557 4664 4345 83 8 3 chr1 106417115 106417738 -136246615 + L1PA8 LINE L1 5558 6172 0 303 306 36 48 chr1 106419228 106419702 -136244651 - L1M4 LINE L1 -1089 5040 4573 611 294 78 40 chr1 106419766 106420433 -136243920 - L1MEc LINE L1 -2643 3486 2769 807 167 0 0 chr1 106420433 106420559 -136243794 - FLAM_C SINE Alu -7 126 1 611 294 78 40 chr1 106420559 106420869 -136243484 - L1MEc LINE L1 -3360 2769 2472 28 0 0 0 chr1 106420869 106420897 -136243456 + AT_rich Low_complexity Low_complexity 1 28 0 298 172 0 17 chr1 106420904 106420962 -136243391 + Tigger2 DNA MER2_type 14 70 -2648 784 242 0 28 chr1 106420998 106421180 -136243173 - MER8 DNA MER2_type -62 177 1 515 329 41 56 chr1 106421206 106421693 -136242660 - L1MEc LINE L1 -3684 2445 2007 548 245 13 122 chr1 106422288 106422525 -136241828 - MIR SINE MIR -51 211 1 934 200 42 23 chr1 106422589 106422715 -136241638 - MER58B DNA MER1_type -2087 333 211 1926 129 0 0 chr1 106422715 106422978 -136241375 + AluSx SINE Alu 31 293 -19 934 200 42 23 chr1 106422978 106423111 -136241242 - MER58B DNA MER1_type -2209 211 69 1588 206 138 18 chr1 106423113 106423569 -136240784 + L1MCa LINE L1 20 530 -5896 205 224 0 26 chr1 106423657 106423733 -136240620 + (TATG)n Simple_repeat Simple_repeat 4 77 0 566 247 24 0 chr1 106423738 106423908 -136240445 + L1MC2 LINE L1 6168 6341 -3 257 254 101 42 chr1 106424064 106424281 -136240072 - L1MEc LINE L1 -4704 1606 1377 39 0 0 0 chr1 106424386 106424425 -136239928 + AT_rich Low_complexity Low_complexity 1 39 0 1060 337 15 15 chr1 106424527 106424922 -136239431 + LTR16C LTR ERVL 89 483 -8 433 365 50 41 chr1 106424926 106425031 -136239322 - L1MEc LINE L1 -5295 824 721 225 0 0 0 chr1 106425031 106425056 -136239297 + (TG)n Simple_repeat Simple_repeat 2 26 0 433 365 50 41 chr1 106425056 106425268 -136239085 - L1MEc LINE L1 -5398 721 504 253 326 74 16 chr1 106425518 106425708 -136238645 - L1MEc LINE L1 -5644 475 275 24 32 0 0 chr1 106425978 106426009 -136238344 + AT_rich Low_complexity Low_complexity 1 31 0 575 326 6 12 chr1 106426114 106426286 -136238067 - MER5B DNA MER1_type -4 174 4 590 318 41 25 chr1 106426689 106426934 -136237419 + MIR SINE MIR 14 262 0 288 313 7 73 chr1 106427107 106427257 -136237096 - L2 LINE L2 0 3272 3133 348 94 0 0 chr1 106427317 106427370 -136236983 + (CA)n Simple_repeat Simple_repeat 1 53 0 229 333 53 0 chr1 106427974 106428088 -136236265 - MIR SINE MIR -89 173 54 301 252 84 23 chr1 106430538 106430669 -136233684 - MLT1L LTR MaLR -10 605 467 321 281 120 28 chr1 106430700 106430917 -136233436 - MLT1L LTR MaLR -225 390 154 2168 127 0 0 chr1 106431003 106431295 -136233058 + AluSx SINE Alu 1 292 -20 247 278 22 11 chr1 106431346 106431436 -136232917 - LTR33 LTR ERVL -104 417 327 421 249 93 44 chr1 106431513 106431718 -136232635 - LTR33 LTR ERVL -306 215 1 399 309 58 16 chr1 106432426 106432617 -136231736 - MIR SINE MIR -58 204 6 238 278 0 0 chr1 106432869 106432923 -136231430 + GA-rich Low_complexity Low_complexity 3 56 0 475 357 68 37 chr1 106433409 106433922 -136230431 + L2 LINE L2 2365 2893 -421 1345 324 61 51 chr1 106434804 106435619 -136228734 - L2 LINE L2 0 3313 2463 2213 122 20 0 chr1 106435619 106435922 -136228431 + AluSx SINE Alu 1 309 -3 1345 324 61 51 chr1 106435922 106436170 -136228183 - L2 LINE L2 -850 2463 2219 361 63 0 288 chr1 106436637 106436748 -136227605 - MADE1 DNA Mariner 0 80 2 247 346 87 39 chr1 106438308 106438435 -136225918 + L2 LINE L2 3122 3254 -18 300 299 0 0 chr1 106439281 106439358 -136224995 + MIR SINE MIR 70 146 -62 5563 125 37 35 chr1 106439364 106439917 -136224436 + Tigger3b DNA MER2_type 1 552 -2476 2076 134 0 3 chr1 106439917 106440215 -136224138 - AluSx SINE Alu -15 297 1 5563 125 37 35 chr1 106440215 106440555 -136223798 + Tigger3b DNA MER2_type 552 890 -2138 198 0 0 0 chr1 106440555 106440577 -136223776 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1738 160 0 53 chr1 106440580 106440880 -136223473 - AluJo SINE Alu -28 284 1 5563 125 37 35 chr1 106440880 106441123 -136223230 + Tigger3b DNA MER2_type 891 1199 -32 2569 166 38 25 chr1 106441432 106441609 -136222744 + MER50 LTR ERV1 1 174 -560 2246 117 10 0 chr1 106441609 106441918 -136222435 + AluSq SINE Alu 1 312 -1 2569 166 38 25 chr1 106441918 106442293 -136222060 + MER50 LTR ERV1 174 560 -174 1667 108 170 81 chr1 106442293 106442664 -136221689 - MER4A LTR ERV1 0 664 261 580 120 0 20 chr1 106442664 106442764 -136221589 - MER4A LTR ERV1 -566 98 1 * 884 169 0 24 chr1 106442764 106442919 -136221434 + MER50 LTR ERV1 561 711 -23 254 363 24 16 chr1 106443270 106443394 -136220959 + L3b LINE CR1 1405 1529 -54 2447 70 0 3 chr1 106443544 106443846 -136220507 - AluY SINE Alu -10 301 1 388 322 0 94 chr1 106444048 106444142 -136220211 - MER5A DNA MER1_type -6 183 116 2213 60 0 0 chr1 106444142 106444411 -136219942 + AluY SINE Alu 32 300 -11 388 322 0 94 chr1 106444411 106444518 -136219835 - MER5A DNA MER1_type -73 116 1 1957 227 55 26 chr1 106444661 106445449 -136218904 + L1ME1 LINE L1 4704 5508 -743 690 260 55 52 chr1 106445458 106445823 -136218530 + L1ME1 LINE L1 5792 6157 -9 745 287 33 31 chr1 106445837 106446277 -136218076 + HAL1 LINE L1 2000 2438 -69 268 291 44 63 chr1 106446616 106446774 -136217579 + LTR40b LTR ERVL 133 287 -175 556 216 10 0 chr1 106446780 106446882 -136217471 - MLT1E1 LTR MaLR -48 606 504 483 229 53 6 chr1 106446936 106447106 -136217247 + L1ME2 LINE L1 5795 5972 -192 1582 245 27 41 chr1 106447120 106447618 -136216735 - MLT1E1 LTR MaLR -183 442 1 1727 206 11 14 chr1 106447715 106448079 -136216274 + MLT1A1 LTR MaLR 1 363 -2 12615 190 28 5 chr1 106448275 106451840 -136212513 + L1PB1 LINE L1 6 3940 -2922 6175 37 0 0 chr1 106451841 106452601 -136211752 - L1PA3 LINE L1 -2131 4015 3256 11423 29 0 0 chr1 106452601 106454717 -136209636 + L1PA3 LINE L1 4037 6152 -3 9058 194 11 6 chr1 106454723 106457419 -136206934 + L1PB1 LINE L1 3928 6632 -235 5820 181 18 13 chr1 106457541 106459165 -136205188 + L1MC1 LINE L1 4699 6332 -1 2932 166 18 32 chr1 106459219 106459772 -136204581 + MER74A LTR ERVL 14 558 0 39 38 0 0 chr1 106460004 106460057 -136204296 + AT_rich Low_complexity Low_complexity 1 53 0 487 281 43 24 chr1 106460501 106460665 -136203688 - MLT1H LTR MaLR -243 306 140 444 286 60 91 chr1 106461208 106461722 -136202631 + MLT1J LTR MaLR 11 508 -3 349 103 205 0 chr1 106461764 106461842 -136202511 + L1MA8 LINE L1 6194 6287 -4 21 0 0 0 chr1 106461842 106461863 -136202490 + AT_rich Low_complexity Low_complexity 1 21 0 274 203 47 0 chr1 106462169 106462233 -136202120 - L2 LINE L2 -3 3310 3244 3488 130 50 10 chr1 106462483 106463104 -136201249 - L1MA4 LINE L1 -6 6294 5649 1385 112 20 0 chr1 106463832 106464028 -136200325 - L1PA16 LINE L1 -293 5873 5674 1864 147 15 0 chr1 106464038 106464567 -136199786 - L1PA16 LINE L1 -740 5560 5024 2161 156 120 0 chr1 106464592 106465042 -136199311 + L1 LINE L1 4500 5003 -1143 1795 204 28 32 chr1 106465518 106465695 -136198658 + MLT1C LTR MaLR 4 180 -287 405 0 0 0 chr1 106465695 106465740 -136198613 + (CA)n Simple_repeat Simple_repeat 2 46 0 1795 204 28 32 chr1 106465740 106466028 -136198325 + MLT1C LTR MaLR 180 467 0 201 222 22 0 chr1 106466584 106466629 -136197724 + (TA)n Simple_repeat Simple_repeat 2 47 0 420 267 39 15 chr1 106468472 106468585 -136195768 - MER20B DNA MER1_type -49 170 53 1670 67 0 19 chr1 106468635 106468844 -136195509 - AluSg/x SINE Alu -24 286 82 236 299 184 25 chr1 106468999 106469200 -136195153 - L2 LINE L2 -1416 1898 1666 226 264 0 0 chr1 106469296 106469349 -136195004 + (TA)n Simple_repeat Simple_repeat 1 53 0 544 325 50 10 chr1 106470057 106470359 -136193994 + L1ME4a LINE L1 5331 5644 -477 385 307 88 47 chr1 106470428 106470656 -136193697 + L1ME4a LINE L1 5742 5992 -129 1387 164 206 0 chr1 106470656 106470836 -136193517 - MER44D DNA MER2_type -1882 609 467 186 43 0 0 chr1 106470836 106470859 -136193494 + (TC)n Simple_repeat Simple_repeat 2 24 0 1387 164 206 0 chr1 106470859 106470959 -136193394 - MER44D DNA MER2_type -2024 467 1 385 307 88 47 chr1 106470959 106471095 -136193258 + L1ME4a LINE L1 5992 6121 0 538 211 27 26 chr1 106471303 106471571 -136192782 + L1MB2 LINE L1 5825 6082 -89 473 178 40 30 chr1 106471543 106471644 -136192709 + L1M3f LINE L1 1238 1339 -5226 * 1389 192 23 63 chr1 106471648 106472091 -136192262 + L1M3f LINE L1 3182 3606 -3959 2471 189 30 42 chr1 106472091 106472733 -136191620 - L1P4 LINE L1 -749 5397 4764 1607 64 0 18 chr1 106472732 106472950 -136191403 + L1P4 LINE L1 5405 5618 -548 * 2054 146 30 86 chr1 106472936 106473403 -136190950 + L1MA4 LINE L1 5855 6295 -5 24 0 0 0 chr1 106473404 106473428 -136190925 + AT_rich Low_complexity Low_complexity 1 24 0 616 141 50 0 chr1 106473494 106473615 -136190738 + L1MB7 LINE L1 6058 6184 0 422 215 11 11 chr1 106473615 106473708 -136190645 + MIR SINE MIR 168 260 -2 601 182 59 81 chr1 106475301 106475537 -136188816 + AluSq SINE Alu 1 231 -82 234 262 115 0 chr1 106475771 106475832 -136188521 + MIR3 SINE MIR 111 178 -30 1643 199 18 0 chr1 106476152 106476438 -136187915 + AluJb SINE Alu 5 295 -17 535 98 37 0 chr1 106476555 106476637 -136187716 - L1MA3 LINE L1 -6 6299 6215 226 388 27 49 chr1 106476702 106476885 -136187468 - L2 LINE L2 -583 2731 2553 667 136 25 17 chr1 106477582 106477700 -136186653 - L1MA2 LINE L1 0 6304 6186 3394 193 7 24 chr1 106477981 106478891 -136185462 - L1PB4 LINE L1 -874 5272 4407 5049 143 32 7 chr1 106478893 106479754 -136184599 + L1PB4 LINE L1 5269 6151 -5 814 291 35 0 chr1 106479761 106479988 -136184365 + MIR SINE MIR 27 261 -1 509 369 53 14 chr1 106480017 106480372 -136183981 + L2 LINE L2 2494 2862 -452 221 374 12 0 chr1 106480423 106480506 -136183847 + L2 LINE L2 2959 3042 -230 201 237 0 0 chr1 106480628 106480666 -136183687 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 235 361 83 29 chr1 106480962 106481167 -136183186 - L2 LINE L2 -556 2758 2543 1747 124 0 0 chr1 106482554 106482795 -136181558 - AluSx SINE Alu -9 303 63 420 259 114 6 chr1 106483603 106483761 -136180592 - MIR SINE MIR 0 262 88 23 0 0 0 chr1 106484530 106484553 -136179800 + AT_rich Low_complexity Low_complexity 1 23 0 276 169 24 36 chr1 106485199 106485282 -136179071 + (TA)n Simple_repeat Simple_repeat 2 83 0 974 281 60 7 chr1 106486780 106487079 -136177274 - LTR16C LTR ERVL 0 491 177 2453 84 0 0 chr1 106487653 106487962 -136176391 + AluY SINE Alu 1 309 -2 2183 107 7 3 chr1 106487975 106488284 -136176069 + AluSg SINE Alu 1 310 0 712 297 140 9 chr1 106488340 106488759 -136175594 - MLT1J2 LTR MaLR -6 444 1 1438 176 40 7 chr1 106490219 106490492 -136173861 - L1PA16 LINE L1 -4 6162 5881 2071 80 23 4 chr1 106490514 106490776 -136173577 + AluSg SINE Alu 23 289 -21 21 0 0 0 chr1 106491454 106491475 -136172878 + AT_rich Low_complexity Low_complexity 1 21 0 2000 96 92 0 chr1 106493732 106494014 -136170339 + AluSp SINE Alu 1 308 -5 21 0 0 0 chr1 106494177 106494198 -136170155 + AT_rich Low_complexity Low_complexity 1 21 0 444 263 93 45 chr1 106495012 106495411 -136168942 - L1ME4a LINE L1 -17 6104 5687 290 366 46 13 chr1 106495817 106495970 -136168383 - MLT1I LTR MaLR -9 400 243 34 93 0 0 chr1 106496898 106496995 -136167358 + AT_rich Low_complexity Low_complexity 1 97 0 228 35 0 0 chr1 106497537 106497566 -136166787 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 475 290 90 55 chr1 106498256 106498456 -136165897 + MIR3 SINE MIR 2 208 0 298 286 226 0 chr1 106500259 106500427 -136163926 + MIR SINE MIR 51 256 -6 13939 215 11 7 chr1 106500980 106505729 -136158624 - L1PB1 LINE L1 0 6867 2028 38402 71 6 7 chr1 106505732 106511893 -136152460 - L1PA5 LINE L1 0 6154 1 4545 111 13 1 chr1 106511893 106512662 -136151691 - L1PB1 LINE L1 -4830 2033 1106 987 172 5 0 chr1 106512662 106512854 -136151499 - L1PB1 LINE L1 -6668 195 3 185 270 81 14 chr1 106513263 106513337 -136151016 + L2 LINE L2 1884 1962 -1352 253 258 31 21 chr1 106513414 106513511 -136150842 + MLT1J2 LTR MaLR 66 163 -287 379 306 83 16 chr1 106513572 106513765 -136150588 + MLT1J2 LTR MaLR 245 450 0 323 364 58 10 chr1 106514097 106514303 -136150050 + L2 LINE L2 2404 2619 -695 308 294 33 112 chr1 106514304 106514580 -136149773 + MIR SINE MIR 8 261 -1 24 0 0 0 chr1 106514821 106514845 -136149508 + AT_rich Low_complexity Low_complexity 1 24 0 2141 164 13 51 chr1 106515379 106515536 -136148817 + Tigger2a DNA MER2_type 1 162 -2546 2153 117 0 3 chr1 106515536 106515827 -136148526 - AluSx SINE Alu -22 290 1 2141 164 13 51 chr1 106515827 106516119 -136148234 + Tigger2a DNA MER2_type 162 433 -1 209 290 29 14 chr1 106516119 106516188 -136148165 - MIR SINE MIR -112 150 81 424 283 69 14 chr1 106517144 106517289 -136147064 + LTR33 LTR ERVL 31 183 -338 282 331 75 33 chr1 106517314 106517649 -136146704 + LTR33 LTR ERVL 162 510 -11 2079 94 0 8 chr1 106518381 106518647 -136145706 + AluSp SINE Alu 1 264 -49 278 0 54 0 chr1 106518658 106518695 -136145658 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 671 172 0 16 chr1 106518717 106518839 -136145514 + FLAM_C SINE Alu 23 142 -1 2436 276 83 30 chr1 106520916 106522136 -136142217 + L1ME3 LINE L1 3391 4546 -1624 1526 204 27 10 chr1 106522136 106522430 -136141923 - AluJb SINE Alu -13 299 1 2436 276 83 30 chr1 106522430 106522618 -136141735 + L1ME3 LINE L1 4546 4723 -1447 2214 115 3 0 chr1 106522618 106522914 -136141439 + AluSx SINE Alu 3 299 -13 2436 276 83 30 chr1 106522914 106523770 -136140583 + L1ME3 LINE L1 4723 5780 -390 2039 126 21 3 chr1 106523770 106524055 -136140298 + AluSx SINE Alu 1 290 -22 2436 276 83 30 chr1 106524055 106524108 -136140245 + L1ME3 LINE L1 5780 5829 -341 23 0 0 0 chr1 106524408 106524431 -136139922 + AT_rich Low_complexity Low_complexity 1 23 0 594 282 66 7 chr1 106524432 106524705 -136139648 + L1ME3 LINE L1 5856 6144 -18 226 250 0 14 chr1 106524710 106524782 -136139571 + (TAAA)n Simple_repeat Simple_repeat 1 71 0 1133 168 20 157 chr1 106525214 106525559 -136138794 + AluJb SINE Alu 1 298 -4 482 347 36 20 chr1 106526337 106526585 -136137768 + MIR SINE MIR 8 259 -3 7195 209 51 15 chr1 106526614 106527793 -136136560 - L1MC1 LINE L1 0 6613 5478 2228 122 0 3 chr1 106527793 106528104 -136136249 - AluSg SINE Alu 0 310 1 7195 209 51 15 chr1 106528104 106528767 -136135586 - L1MC1 LINE L1 -1135 5478 4840 1937 163 3 0 chr1 106528767 106529068 -136135285 - AluSx SINE Alu -8 304 3 7195 209 51 15 chr1 106529068 106530495 -136133858 - L1MC1 LINE L1 -1773 4840 3220 2182 164 13 22 chr1 106530493 106530945 -136133408 - L1MC1 LINE L1 -5203 1223 776 * 642 170 7 50 chr1 106532145 106532286 -136132067 + FLAM_C SINE Alu 9 143 0 951 191 0 6 chr1 106532298 106532471 -136131882 + AluSg/x SINE Alu 127 298 -12 1304 177 25 92 chr1 106532554 106532870 -136131483 + AluJb SINE Alu 1 295 -17 226 236 36 0 chr1 106533017 106533072 -136131281 - L2 LINE L2 0 3313 3257 554 228 75 48 chr1 106534310 106534644 -136129709 - MER34B LTR ERV1 -10 555 213 1723 167 40 3 chr1 106534721 106535021 -136129332 - AluJb SINE Alu -1 311 1 269 186 46 16 chr1 106535024 106535137 -136129216 - MER34C LTR ERV1 -409 133 17 267 242 116 0 chr1 106535529 106535624 -136128729 - MIR3 SINE MIR -1 207 102 376 345 113 7 chr1 106535739 106535881 -136128472 + MER91A DNA MER1_type 40 196 0 246 317 10 10 chr1 106536241 106536342 -136128011 + (TA)n Simple_repeat Simple_repeat 2 102 0 387 73 0 0 chr1 106536346 106536401 -136127952 + (TG)n Simple_repeat Simple_repeat 2 56 0 306 398 20 36 chr1 106537386 106537582 -136126771 + L2 LINE L2 3063 3255 -17 183 80 0 0 chr1 106537582 106537607 -136126746 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 487 276 8 30 chr1 106539275 106539409 -136124944 - MIR SINE MIR -113 149 19 434 268 177 41 chr1 106539757 106539977 -136124376 + MIR SINE MIR 7 256 -6 10771 38 2 108 chr1 106541389 106542940 -136121413 - SVA Other Other 0 1386 1 204 67 0 0 chr1 106542940 106542970 -136121383 + (GGGAGA)n Simple_repeat Simple_repeat 2 31 0 260 294 139 26 chr1 106543823 106544017 -136120336 + LTR16C LTR ERVL 196 411 -80 1124 191 9 0 chr1 106544027 106544247 -136120106 - MLT1D LTR MaLR -6 499 278 1828 209 32 45 chr1 106544267 106544774 -136119579 - LTR54 LTR ERV1 -10 500 1 558 176 109 55 chr1 106544774 106544939 -136119414 - MLT1D LTR MaLR -262 243 70 217 338 84 14 chr1 106545093 106545235 -136119118 - L2 LINE L2 -1293 2021 1870 375 302 45 83 chr1 106545392 106545657 -136118696 + L2 LINE L2 3017 3271 -1 359 198 21 42 chr1 106545743 106545839 -136118514 - MER5A DNA MER1_type -91 98 5 479 233 15 134 chr1 106545845 106546047 -136118306 - MER5B DNA MER1_type 0 178 1 424 250 36 43 chr1 106546048 106546188 -136118165 - MIR3 SINE MIR -49 159 21 363 229 0 12 chr1 106547254 106547337 -136117016 - MER5A DNA MER1_type -80 109 28 1553 147 67 27 chr1 106547723 106548073 -136116280 + MER67C LTR ERV1 33 403 -243 356 216 144 0 chr1 106548083 106548222 -136116131 + MER67D LTR ERV1 356 514 0 258 32 0 0 chr1 106548252 106548283 -136116070 + (TATG)n Simple_repeat Simple_repeat 2 32 0 184 217 22 0 chr1 106548375 106548421 -136115932 + L2 LINE L2 2652 2698 -616 2384 162 69 30 chr1 106549503 106550066 -136114287 + MER34C LTR ERV1 1 585 0 326 291 63 8 chr1 106550400 106550527 -136113826 + MIR SINE MIR 117 250 -12 361 214 71 71 chr1 106551328 106551468 -136112885 - MIR SINE MIR -1 261 122 30 66 0 13 chr1 106551684 106551704 -136112649 + AT_rich Low_complexity Low_complexity 1 20 -55 1340 25 0 0 chr1 106551704 106551861 -136112492 + L1PA3 LINE L1 5995 6151 -4 30 66 0 13 chr1 106551861 106551916 -136112437 + AT_rich Low_complexity Low_complexity 20 75 0 2664 14 0 0 chr1 106551978 106552272 -136112081 - AluY SINE Alu -17 294 1 28 38 0 19 chr1 106552310 106552331 -136112022 + AT_rich Low_complexity Low_complexity 1 21 -31 2227 125 0 0 chr1 106552331 106552626 -136111727 - AluSx SINE Alu -17 295 1 28 38 0 19 chr1 106552626 106552657 -136111696 + AT_rich Low_complexity Low_complexity 21 52 0 195 100 0 0 chr1 106553566 106553596 -136110757 + (TTA)n Simple_repeat Simple_repeat 1 30 0 594 170 36 62 chr1 106554006 106554200 -136110153 - MER112 DNA MER1_type -6 254 66 2620 40 0 0 chr1 106555455 106555755 -136108598 + AluY SINE Alu 1 300 -11 277 318 11 0 chr1 106555945 106556033 -136108320 + MIR SINE MIR 25 113 -95 191 303 0 61 chr1 106556906 106557005 -136107348 + L2 LINE L2 3180 3272 0 473 302 63 24 chr1 106557455 106557707 -136106646 + MIR SINE MIR 1 262 0 5458 126 36 8 chr1 106557860 106558784 -136105569 + Tigger3b DNA MER2_type 1 950 -281 1096 95 0 7 chr1 106558789 106558936 -136105417 - AluSg/x SINE Alu -9 301 156 1405 153 19 19 chr1 106558937 106559205 -136105148 + Tigger3b DNA MER2_type 963 1230 -1 213 94 0 0 chr1 106560033 106560065 -136104288 + (CA)n Simple_repeat Simple_repeat 2 33 0 578 306 122 9 chr1 106561039 106561268 -136103085 + MIR SINE MIR 8 262 0 1854 117 85 7 chr1 106562076 106562358 -136101995 + AluSx SINE Alu 1 304 -8 265 280 0 0 chr1 106562459 106562534 -136101819 + MER103 DNA DNA 43 117 -49 2000 153 17 0 chr1 106562805 106563099 -136101254 + AluSx SINE Alu 1 299 -13 293 281 52 59 chr1 106563244 106563379 -136100974 + MIR3 SINE MIR 59 192 -16 1050 321 101 26 chr1 106563379 106563946 -136100407 - L3 LINE CR1 -1 1576 968 532 229 0 25 chr1 106563940 106564062 -136100291 - MIR SINE MIR -22 240 122 * 406 269 235 20 chr1 106564078 106564227 -136100126 - MER5A DNA MER1_type 0 189 9 473 230 30 174 chr1 106564451 106564721 -136099632 - MIR SINE MIR 0 262 32 180 236 146 0 chr1 106565104 106565159 -136099194 - L2 LINE L2 -97 3175 3113 2063 132 0 3 chr1 106566198 106566494 -136097859 - AluSx SINE Alu -16 296 2 22 0 0 0 chr1 106567689 106567711 -136096642 + AT_rich Low_complexity Low_complexity 1 22 0 383 285 0 39 chr1 106567954 106568084 -136096269 + L2 LINE L2 3186 3310 -3 274 298 145 15 chr1 106568097 106568228 -136096125 + MIR SINE MIR 6 153 -109 216 300 67 0 chr1 106568872 106568932 -136095421 - L2 LINE L2 -4 3268 3205 579 227 50 71 chr1 106569347 106569545 -136094808 + MIR SINE MIR 54 247 -15 581 270 6 6 chr1 106571405 106571564 -136092789 - MER58B DNA MER1_type -1 340 182 189 195 0 0 chr1 106571564 106571605 -136092748 + GA-rich Low_complexity Low_complexity 1 41 0 380 281 77 29 chr1 106572209 106572651 -136091702 - L1ME4a LINE L1 -2 6119 5657 329 349 92 23 chr1 106572708 106572926 -136091427 - L1ME4a LINE L1 -2250 5558 5326 2381 87 3 0 chr1 106573074 106573373 -136090980 - AluSx SINE Alu -12 300 1 192 97 0 0 chr1 106573491 106573522 -136090831 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 767 150 8 0 chr1 106573977 106574104 -136090249 + LTR51 LTR ERV1 1 128 -543 269 250 0 0 chr1 106574313 106574365 -136089988 + polypyrimidine Low_complexity Low_complexity 3 54 0 396 318 99 64 chr1 106574404 106574920 -136089433 - L1MB8 LINE L1 -289 5889 5522 384 304 26 10 chr1 106574947 106575226 -136089127 - L1MB8 LINE L1 -704 5538 5255 404 300 145 29 chr1 106575344 106575719 -136088634 - L1MB8 LINE L1 -1087 5059 4631 1637 180 3 11 chr1 106575834 106576147 -136088206 - AluJo SINE Alu 0 311 1 422 320 106 23 chr1 106576205 106576717 -136087636 - L1MB8 LINE L1 -1804 4342 3789 494 316 73 46 chr1 106577230 106577844 -136086509 - L1MB8 LINE L1 -2990 3156 2526 321 309 58 51 chr1 106577846 106578140 -136086213 - L1MB8 LINE L1 -3722 2424 2129 188 307 88 26 chr1 106578255 106578369 -136085984 + MIR SINE MIR 132 252 -10 349 320 70 56 chr1 106578410 106578701 -136085652 - HAL1b LINE L1 -900 448 150 1655 186 3 20 chr1 106578701 106579002 -136085351 + AluJb SINE Alu 5 300 -12 349 320 70 56 chr1 106579002 106579066 -136085287 - HAL1b LINE L1 -1198 150 88 733 299 16 5 chr1 106581975 106582169 -136082184 - MIR SINE MIR -65 197 2 1744 139 63 36 chr1 106583807 106584110 -136080243 + AluJo SINE Alu 1 311 -1 2143 139 0 3 chr1 106584220 106584522 -136079831 + AluSq SINE Alu 2 302 -11 235 234 0 0 chr1 106586066 106586113 -136078240 + (CA)n Simple_repeat Simple_repeat 2 48 0 603 312 52 13 chr1 106587209 106587440 -136076913 - MIR SINE MIR -6 256 17 374 321 103 5 chr1 106587895 106588079 -136076274 + MIR3 SINE MIR 1 202 -6 186 127 18 36 chr1 106588962 106589017 -136075336 + (TA)n Simple_repeat Simple_repeat 2 55 0 333 312 55 55 chr1 106589086 106589144 -136075209 + L1MC4a LINE L1 5674 5731 -2077 2147 130 0 0 chr1 106589144 106589437 -136074916 + AluSc SINE Alu 1 293 -16 333 312 55 55 chr1 106589437 106589670 -136074683 + L1MC4a LINE L1 5730 5965 -1843 2133 132 0 3 chr1 106589836 106590139 -136074214 - AluSx SINE Alu -10 302 1 225 0 0 0 chr1 106590262 106590287 -136074066 + (ATG)n Simple_repeat Simple_repeat 3 27 0 1603 162 7 32 chr1 106590645 106590887 -136073466 + AluJb SINE Alu 1 235 -77 3321 134 12 71 chr1 106590887 106591537 -136072816 - LTR9 LTR ERV1 0 612 1 1603 162 7 32 chr1 106591537 106591603 -136072750 + AluJb SINE Alu 235 301 -11 331 267 0 50 chr1 106591624 106591725 -136072628 + MIR SINE MIR 38 133 -75 2272 57 3 3 chr1 106591803 106592110 -136072243 - AluY SINE Alu 0 307 1 317 286 65 0 chr1 106592113 106592190 -136072163 + L2 LINE L2 3223 3304 -9 276 30 0 0 chr1 106593142 106593175 -136071178 + (TG)n Simple_repeat Simple_repeat 2 34 0 2095 114 19 41 chr1 106594008 106594324 -136070029 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr1 106594440 106594461 -136069892 + AT_rich Low_complexity Low_complexity 1 21 0 207 298 231 16 chr1 106594518 106594639 -136069714 + L2 LINE L2 3126 3272 0 285 392 33 0 chr1 106595077 106595197 -136069156 - L2 LINE L2 -5 3267 3144 661 189 15 30 chr1 106595634 106595766 -136068587 - FLAM_A SINE Alu -3 130 1 600 339 30 71 chr1 106597276 106597642 -136066711 - L2 LINE L2 -7 3265 2915 2935 171 19 66 chr1 106598455 106598911 -136065442 + LTR8 LTR ERV1 1 412 -279 246 32 0 0 chr1 106598911 106598942 -136065411 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2935 171 19 66 chr1 106598942 106599210 -136065143 + LTR8 LTR ERV1 412 691 0 378 308 56 98 chr1 106599494 106599799 -136064554 + L2 LINE L2 2981 3272 0 380 293 45 38 chr1 106600600 106600733 -136063620 - L2 LINE L2 0 3313 3180 2177 119 51 23 chr1 106600792 106601146 -136063207 + THE1B LTR MaLR 1 364 0 11057 97 4 11 chr1 106601146 106602000 -136062353 + THE1B-int LTR MaLR 1 840 -740 5119 24 0 0 chr1 106602000 106602592 -136061761 + L1PA3 LINE L1 5564 6155 0 11057 97 4 11 chr1 106602592 106603328 -136061025 + THE1B-int LTR MaLR 840 1580 0 2048 127 54 25 chr1 106603328 106603682 -136060671 + THE1B LTR MaLR 1 364 0 192 264 75 0 chr1 106604302 106604355 -136059998 - L2 LINE L2 -70 3202 3146 2434 96 11 8 chr1 106605375 106605729 -136058624 + THE1A LTR MaLR 1 355 0 640 200 19 6 chr1 106605775 106605935 -136058418 - L1MA8 LINE L1 -3 6288 6127 999 148 11 0 chr1 106605935 106606111 -136058242 + L1PB4 LINE L1 5879 6056 -100 1220 122 41 32 chr1 106606118 106606339 -136058014 + MER30 DNA MER1_type 6 228 -2 586 148 10 0 chr1 106606341 106606442 -136057911 + L1PB4 LINE L1 6054 6155 -1 415 125 0 0 chr1 106606449 106606521 -136057832 - L1MA8 LINE L1 -150 6141 6070 401 188 211 31 chr1 106607917 106608045 -136056308 - MIR SINE MIR 0 262 112 238 245 0 64 chr1 106608413 106608507 -136055846 - MIR SINE MIR -1 261 174 280 411 25 41 chr1 106609063 106609306 -136055047 - L2 LINE L2 -61 3211 2973 33 56 0 0 chr1 106609695 106609749 -136054604 + AT_rich Low_complexity Low_complexity 1 54 0 963 181 151 10 chr1 106609771 106609854 -136054499 - AluJb SINE Alu -83 229 159 249 33 0 0 chr1 106609854 106609884 -136054469 + (TTG)n Simple_repeat Simple_repeat 1 30 0 963 181 151 10 chr1 106609884 106609999 -136054354 - AluJb SINE Alu -153 159 3 474 293 14 14 chr1 106610299 106610446 -136053907 + MIR3 SINE MIR 51 197 -11 446 291 107 58 chr1 106610450 106610776 -136053577 - MLT1I LTR MaLR -27 382 41 5009 89 11 7 chr1 106612625 106612650 -136051703 - L1PB2 LINE L1 -2 6149 6126 2273 105 76 15 chr1 106612650 106612993 -136051360 - THE1B LTR MaLR 0 364 1 5009 89 11 7 chr1 106612993 106613711 -136050642 - L1PB2 LINE L1 -25 6126 5403 319 317 81 6 chr1 106614998 106615159 -136049194 + Charlie8 DNA MER1_type 39 211 -2206 277 231 94 69 chr1 106615263 106615423 -136048930 + Charlie8 DNA MER1_type 345 508 -1909 180 310 17 0 chr1 106615758 106615816 -136048537 - L2 LINE L2 -4 3309 3251 288 264 88 123 chr1 106615837 106615972 -136048381 - MIR SINE MIR -12 250 125 1891 181 3 0 chr1 106615972 106616282 -136048071 + AluJo SINE Alu 1 311 -1 288 264 88 123 chr1 106616282 106616373 -136047980 - MIR SINE MIR -137 125 32 655 279 49 0 chr1 106617220 106617403 -136046950 + MIR SINE MIR 1 192 -70 339 242 188 12 chr1 106619351 106619516 -136044837 - MER117 DNA MER1_type 0 197 4 1592 215 69 51 chr1 106619804 106620256 -136044097 - MLT2C2 LTR ERVL 0 464 5 385 269 136 24 chr1 106620824 106621184 -136043169 + L1ME LINE L1 5378 5786 -380 25 0 0 0 chr1 106621382 106621407 -136042946 + AT_rich Low_complexity Low_complexity 1 25 0 1649 189 0 65 chr1 106621418 106621529 -136042824 + AluJb SINE Alu 6 123 -189 2127 74 88 0 chr1 106621529 106621813 -136042540 - AluY SINE Alu -2 309 1 1649 189 0 65 chr1 106621813 106622024 -136042329 + AluJb SINE Alu 123 307 -5 346 282 113 0 chr1 106623430 106623554 -136040799 - L2 LINE L2 -1 3312 3175 1647 181 33 7 chr1 106623877 106624180 -136040173 - AluJb SINE Alu -1 311 1 520 192 100 46 chr1 106627067 106627197 -136037156 - MIR SINE MIR -1 261 125 1853 145 19 35 chr1 106627463 106627773 -136036580 - AluJo SINE Alu -7 305 1 238 285 7 69 chr1 106627838 106627982 -136036371 - L1M4 LINE L1 -5362 1180 1046 588 336 30 71 chr1 106729376 106729742 -135934611 - L2 LINE L2 -7 3265 2915 3228 167 23 70 chr1 106730555 106731011 -135933342 + LTR8 LTR ERV1 1 412 -279 246 32 0 0 chr1 106731011 106731042 -135933311 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3228 167 23 70 chr1 106731042 106731310 -135933043 + LTR8 LTR ERV1 412 691 0 372 308 56 98 chr1 106731594 106731899 -135932454 + L2 LINE L2 2981 3272 0 823 200 56 6 chr1 106732216 106732396 -135931957 + AluJb SINE Alu 123 311 -1 326 282 113 0 chr1 106732719 106732843 -135931510 + L2 LINE L2 3175 3312 -1 246 269 0 0 chr1 106734155 106734222 -135930131 - L1MC4 LINE L1 -62 7980 7914 1110 215 0 0 chr1 106734249 106734449 -135929904 - AluJb SINE Alu -5 307 108 2133 77 87 0 chr1 106734460 106734746 -135929607 + AluY SINE Alu 1 311 0 396 283 146 41 chr1 106734913 106735132 -135929221 - L1ME LINE L1 -375 5789 5548 399 168 306 34 chr1 106735138 106735347 -135929006 - L1ME LINE L1 -638 5524 5259 1792 215 69 51 chr1 106735841 106736293 -135928060 + MLT2C2 LTR ERVL 5 464 0 402 249 188 12 chr1 106736580 106736745 -135927608 + MER117 DNA MER1_type 4 197 0 646 279 49 0 chr1 106738664 106738847 -135925506 - MIR SINE MIR -70 192 1 276 264 88 123 chr1 106739694 106739785 -135924568 + MIR SINE MIR 32 125 -137 1857 181 3 0 chr1 106739785 106740095 -135924258 - AluJo SINE Alu -1 311 1 276 264 88 123 chr1 106740095 106740230 -135924123 + MIR SINE MIR 125 250 -12 338 231 94 69 chr1 106740644 106740804 -135923549 - Charlie8 DNA MER1_type -1909 508 345 386 317 81 6 chr1 106740908 106741069 -135923284 - Charlie8 DNA MER1_type -2206 211 39 5424 91 11 7 chr1 106742351 106743074 -135921279 + L1PB2 LINE L1 5398 6126 -25 2440 105 76 15 chr1 106743074 106743417 -135920936 + THE1B LTR MaLR 1 364 0 5424 91 11 7 chr1 106743417 106743442 -135920911 + L1PB2 LINE L1 6126 6149 -2 2029 138 0 10 chr1 106744672 106744970 -135919383 + AluSg SINE Alu 2 296 -14 285 340 28 0 chr1 106746096 106746202 -135918151 + CT-rich Low_complexity Low_complexity 1 109 0 246 386 0 19 chr1 106746231 106746389 -135917964 + C-rich Low_complexity Low_complexity 3 157 0 2149 129 0 3 chr1 106746791 106747094 -135917259 - AluSx SINE Alu -10 302 1 225 0 0 0 chr1 106747217 106747242 -135917111 + (ATG)n Simple_repeat Simple_repeat 3 27 0 1547 152 7 45 chr1 106747600 106747842 -135916511 + AluJb SINE Alu 1 230 -82 3548 140 12 71 chr1 106747842 106748492 -135915861 - LTR9 LTR ERV1 0 612 1 1547 152 7 45 chr1 106748492 106748558 -135915795 + AluJb SINE Alu 230 297 -15 332 267 0 50 chr1 106748579 106748680 -135915673 + MIR SINE MIR 38 133 -75 2313 53 3 3 chr1 106748758 106749065 -135915288 - AluY SINE Alu 0 307 1 312 286 65 0 chr1 106749068 106749145 -135915208 + L2 LINE L2 3223 3304 -9 9295 100 4 13 chr1 106749769 106750297 -135914056 + THE1B-int LTR MaLR 328 859 -721 5407 27 0 0 chr1 106750297 106750889 -135913464 + L1PA3 LINE L1 5564 6155 0 9295 100 4 13 chr1 106750889 106751625 -135912728 + THE1B-int LTR MaLR 859 1580 0 2249 119 54 25 chr1 106751625 106751979 -135912374 + THE1B LTR MaLR 1 364 0 613 202 9 12 chr1 106752530 106752740 -135911613 - MLT1A1 LTR MaLR -102 263 1 558 217 42 0 chr1 106752750 106752893 -135911460 - MER3 DNA MER1_type -28 181 33 1098 259 130 32 chr1 106753134 106753633 -135910720 + MLT1H LTR MaLR 2 549 0 2266 75 34 3 chr1 106753695 106753988 -135910365 + AluY SINE Alu 3 304 -7 623 315 97 21 chr1 106753998 106754277 -135910076 - MLT1K LTR MaLR -162 426 127 2277 164 28 84 chr1 106754365 106754900 -135909453 - MLT1D LTR MaLR 0 505 1 238 223 207 25 chr1 106755610 106755731 -135908622 + MIR SINE MIR 88 230 -32 247 254 0 0 chr1 106755773 106755828 -135908525 - L2 LINE L2 -8 3264 3210 436 271 82 74 chr1 106756034 106756113 -135908240 - MLT1K LTR MaLR -155 433 356 4624 75 139 64 chr1 106756113 106756221 -135908132 - LTR12 LTR ERV1 0 826 728 2276 54 0 51 chr1 106756221 106756517 -135907836 + AluY SINE Alu 17 297 -14 4624 75 139 64 chr1 106756517 106757176 -135907177 - LTR12 LTR ERV1 -98 728 1 436 271 82 74 chr1 106757176 106757340 -135907013 - MLT1K LTR MaLR -232 356 188 297 0 0 0 chr1 106757469 106757502 -135906851 + (CA)n Simple_repeat Simple_repeat 2 34 0 427 312 64 45 chr1 106757607 106758006 -135906347 - MLT1K LTR MaLR -6 582 145 234 247 0 65 chr1 106758088 106758181 -135906172 - L2 LINE L2 0 3313 3227 33 43 0 0 chr1 106758538 106758585 -135905768 + AT_rich Low_complexity Low_complexity 1 47 0 1829 149 15 49 chr1 106759170 106759515 -135904838 + L1MB4 LINE L1 5802 6134 -46 2329 110 0 0 chr1 106759515 106759824 -135904529 - AluSx SINE Alu -3 309 1 1829 149 15 49 chr1 106759824 106759868 -135904485 + L1MB4 LINE L1 6134 6178 -2 711 168 15 0 chr1 106759925 106760062 -135904291 - MER53 DNA DNA 0 189 51 364 225 22 0 chr1 106760064 106760153 -135904200 - MER53 DNA DNA -97 92 2 214 292 123 0 chr1 106760156 106760221 -135904132 - L2 LINE L2 -31 3241 3169 305 320 80 11 chr1 106760734 106760909 -135903444 + L2 LINE L2 2689 2875 -439 342 239 22 109 chr1 106761053 106761283 -135903070 + MER112 DNA MER1_type 19 228 -32 268 119 0 0 chr1 106761320 106761362 -135902991 + MADE1 DNA Mariner 39 80 0 268 208 38 0 chr1 106762881 106762934 -135901419 - L2 LINE L2 0 3313 3259 2208 179 11 39 chr1 106763304 106763768 -135900585 + L1MD3 LINE L1 7528 7978 -17 215 355 91 16 chr1 106764086 106764207 -135900146 - L2 LINE L2 -1 3271 3142 427 252 31 47 chr1 106764212 106764339 -135900014 - L2 LINE L2 -2 3311 3187 1994 128 0 26 chr1 106765257 106765561 -135898792 - AluSx SINE Alu -16 296 1 916 301 83 40 chr1 106766179 106766601 -135897752 - LTR16B LTR ERVL -19 445 6 7086 60 5 0 chr1 106766804 106767756 -135896597 - L1PA6 LINE L1 -3 6151 5199 23 0 0 0 chr1 106767816 106767839 -135896514 + AT_rich Low_complexity Low_complexity 1 23 0 261 246 0 31 chr1 106767974 106768039 -135896314 - L2 LINE L2 0 3313 3251 27 0 0 0 chr1 106768135 106768162 -135896191 + AT_rich Low_complexity Low_complexity 1 27 0 261 57 0 0 chr1 106769050 106769085 -135895268 + (A)n Simple_repeat Simple_repeat 1 35 0 1455 71 10 15 chr1 106769179 106769376 -135894977 + AluY SINE Alu 105 300 -11 10036 162 71 39 chr1 106770150 106772531 -135891822 + L1MC1 LINE L1 9 2466 -3960 * 21624 138 21 14 chr1 106772521 106774706 -135889647 + L1MA3 LINE L1 16 2184 -5381 2214 112 3 0 chr1 106774706 106775000 -135889353 + AluSp SINE Alu 1 295 -18 21624 138 21 14 chr1 106775000 106775788 -135888565 + L1MA3 LINE L1 2184 3020 -4545 2856 113 32 7 chr1 106775788 106776221 -135888132 - MLT2A1 LTR ERVL 0 444 1 21624 138 21 14 chr1 106776221 106776670 -135887683 + L1MA3 LINE L1 3020 3464 -4101 1485 191 41 29 chr1 106776670 106776984 -135887369 + THE1C LTR MaLR 55 372 -3 13705 170 59 17 chr1 106776988 106777366 -135886987 + L1MA3 LINE L1 3483 3844 -3880 234 0 0 0 chr1 106777366 106777392 -135886961 + (TG)n Simple_repeat Simple_repeat 2 27 0 13705 170 59 17 chr1 106777392 106779186 -135885167 + L1MA3 LINE L1 3844 5562 -2162 3419 72 13 30 chr1 106779186 106779647 -135884706 - MLT2A2 LTR ERVL 0 453 1 13705 170 59 17 chr1 106779647 106781540 -135882813 + L1MA3 LINE L1 5562 7724 0 5399 196 46 28 chr1 106781558 106781658 -135882695 + L1MC1 LINE L1 2463 2560 -4053 1980 126 0 20 chr1 106781658 106781985 -135882368 + AluSx SINE Alu 1 321 0 5399 196 46 28 chr1 106781985 106784903 -135879450 + L1MC1 LINE L1 2560 5424 -1189 2059 98 0 7 chr1 106784903 106785177 -135879176 + AluSx SINE Alu 32 303 -9 1986 137 7 0 chr1 106785186 106785464 -135878889 + AluSx SINE Alu 6 285 -27 249 33 0 0 chr1 106785465 106785495 -135878858 + (CA)n Simple_repeat Simple_repeat 2 31 0 5399 196 46 28 chr1 106785495 106786449 -135877904 + L1MC1 LINE L1 5430 6613 0 790 190 98 0 chr1 106787377 106787551 -135876802 - LTR47A LTR ERVL -1 451 261 22 0 0 0 chr1 106787786 106787808 -135876545 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 106787960 106788000 -135876353 + AT_rich Low_complexity Low_complexity 1 40 0 2039 147 7 0 chr1 106788096 106788403 -135875950 - AluSx SINE Alu -3 309 1 324 276 64 32 chr1 106788709 106788865 -135875488 - HAL1b LINE L1 -411 937 777 1510 203 7 4 chr1 106788946 106789222 -135875131 + AluJo SINE Alu 3 279 -33 27 73 0 0 chr1 106789227 106789282 -135875071 + AT_rich Low_complexity Low_complexity 1 55 0 450 375 45 11 chr1 106789576 106789692 -135874661 - HAL1 LINE L1 -585 1922 1811 347 60 0 0 chr1 106789692 106789742 -135874611 - L1PA10 LINE L1 -4 6164 6115 450 375 45 11 chr1 106789742 106789894 -135874459 - HAL1 LINE L1 -696 1811 1645 1573 145 4 8 chr1 106790113 106790348 -135874005 + AluJb SINE Alu 61 294 -18 235 309 0 15 chr1 106790458 106790526 -135873827 + CT-rich Low_complexity Low_complexity 3 69 0 38290 76 9 9 chr1 106790526 106796671 -135867682 - L1PA4 LINE L1 -2 6153 12 543 125 0 0 chr1 106796778 106796858 -135867495 - MADE1 DNA Mariner 0 80 1 297 0 0 0 chr1 106797349 106797382 -135866971 + (CA)n Simple_repeat Simple_repeat 2 34 0 265 322 62 13 chr1 106798719 106798887 -135865466 - MIR SINE MIR -46 216 40 454 325 40 0 chr1 106799896 106800047 -135864306 - L2 LINE L2 0 3272 3116 211 271 42 0 chr1 106800042 106800090 -135864263 + L2 LINE L2 3219 3268 -4 * 1757 32 0 9 chr1 106800535 106800753 -135863600 + L1PA5 LINE L1 5939 6154 0 186 191 0 0 chr1 106800884 106800926 -135863427 + (TG)n Simple_repeat Simple_repeat 1 42 0 1725 159 16 25 chr1 106801022 106801207 -135863146 - AluJb SINE Alu 0 312 130 189 0 0 0 chr1 106801207 106801228 -135863125 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1725 159 16 25 chr1 106801228 106801357 -135862996 - AluJb SINE Alu -182 130 1 186 351 0 0 chr1 106801594 106801651 -135862702 - L2 LINE L2 -48 3224 3168 448 289 96 24 chr1 106802209 106802417 -135861936 + MLT1J LTR MaLR 239 461 -50 578 286 34 55 chr1 106804352 106804534 -135859819 - MIR SINE MIR -10 252 75 2346 100 3 0 chr1 106804534 106804835 -135859518 + AluSq SINE Alu 1 302 -11 578 286 34 55 chr1 106804835 106804890 -135859463 - MIR SINE MIR -187 75 20 486 301 10 5 chr1 106805231 106805430 -135858923 + L1ME3A LINE L1 5740 5939 -231 198 0 0 0 chr1 106807810 106807832 -135856521 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3168 231 68 15 chr1 106807900 106809432 -135854921 - L1MD2 LINE L1 -2 6357 4751 301 211 0 0 chr1 106810371 106810447 -135853906 - L1M4 LINE L1 -1276 4870 4795 317 315 37 0 chr1 106810499 106810607 -135853746 + L1MC4 LINE L1 6614 6725 -1317 236 244 0 0 chr1 106810641 106810686 -135853667 + (CA)n Simple_repeat Simple_repeat 2 46 0 31 26 0 0 chr1 106810812 106810850 -135853503 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr1 106811579 106811613 -135852740 + AT_rich Low_complexity Low_complexity 1 34 0 42 77 0 0 chr1 106811642 106811733 -135852620 + AT_rich Low_complexity Low_complexity 1 91 0 253 313 125 8 chr1 106812790 106812918 -135851435 - MIR SINE MIR -9 253 111 930 201 6 11 chr1 106812919 106813098 -135851255 + MER45A DNA AcHobo 1 178 0 1373 170 21 60 chr1 106813815 106814145 -135850208 + AluJo SINE Alu 12 330 0 236 268 51 87 chr1 106814250 106814388 -135849965 - L2 LINE L2 -1 3271 3139 360 0 0 0 chr1 106814442 106814482 -135849871 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2202 86 0 4 chr1 106814483 106814763 -135849590 - AluSx SINE Alu -33 279 1 1466 232 69 11 chr1 106815522 106815884 -135848469 - LTR40a LTR ERVL -81 438 56 2519 80 0 0 chr1 106816129 106816429 -135847924 + AluSq SINE Alu 1 300 -13 29 0 0 0 chr1 106816799 106816828 -135847525 + AT_rich Low_complexity Low_complexity 1 29 0 2693 249 58 29 chr1 106817168 106818210 -135846143 - L1ME3 LINE L1 -27 6135 5033 2166 109 3 14 chr1 106818210 106818528 -135845825 + AluSx SINE Alu 1 312 0 2693 249 58 29 chr1 106818528 106818948 -135845405 - L1ME3 LINE L1 -1129 5033 4627 22 0 0 0 chr1 106819083 106819105 -135845248 + AT_rich Low_complexity Low_complexity 1 22 0 1368 117 35 9 chr1 106819111 106819341 -135845012 - L1PA15 LINE L1 -2 6163 5928 1503 206 201 11 chr1 106819341 106819729 -135844624 + MLT2B1 LTR ERVL 1 482 -38 234 91 0 0 chr1 106819729 106819762 -135844591 + (CA)n Simple_repeat Simple_repeat 1 33 0 1503 206 201 11 chr1 106819762 106819810 -135844543 + MLT2B1 LTR ERVL 482 520 0 2169 111 0 13 chr1 106819924 106820230 -135844123 + AluSx SINE Alu 7 308 -4 1256 111 5 0 chr1 106820642 106820832 -135843521 - L1PA13 LINE L1 -1 6162 5972 34 24 0 0 chr1 106822320 106822361 -135841992 + AT_rich Low_complexity Low_complexity 1 41 0 1358 193 50 48 chr1 106823370 106823523 -135840830 - MER46B DNA MER2_type -2498 233 202 2574 134 46 5 chr1 106823523 106823934 -135840419 - MSTA LTR MaLR 0 428 1 1358 193 50 48 chr1 106823934 106824137 -135840216 - MER46B DNA MER2_type -2529 202 1 618 139 0 10 chr1 106824143 106824244 -135840109 - AluSg1 SINE Alu -15 297 198 1944 102 29 10 chr1 106824244 106824626 -135839727 + LTR7 LTR ERV1 9 450 0 1537 97 0 5 chr1 106824627 106824833 -135839520 - AluSg1 SINE Alu -104 205 1 956 156 50 6 chr1 106826086 106826266 -135838087 - MSTA LTR MaLR 0 428 241 940 105 15 0 chr1 106826421 106826554 -135837799 + AluSq/x SINE Alu 1 135 -177 412 141 43 22 chr1 106826606 106826698 -135837655 + MER34B LTR ERV1 450 543 -22 * 1264 166 25 17 chr1 106826697 106826938 -135837415 - MSTA LTR MaLR -185 243 1 373 202 34 0 chr1 106826938 106827027 -135837326 + MER39 LTR ERV1 616 707 0 270 288 75 3 chr1 106827033 106827129 -135837224 - MIR SINE MIR -61 147 47 308 381 29 29 chr1 106827180 106827353 -135837000 - MER5B DNA MER1_type 0 178 6 237 288 17 0 chr1 106827537 106827596 -135836757 + MER34B LTR ERV1 65 124 -441 497 206 62 70 chr1 106827719 106827962 -135836391 + MER34B LTR ERV1 322 562 -3 1898 186 38 32 chr1 106828464 106829010 -135835343 + MLT2A2 LTR ERVL 2 554 0 569 276 76 11 chr1 106829010 106829195 -135835158 - MIR SINE MIR -51 211 15 35717 87 9 25 chr1 106829954 106831905 -135832448 + L1PA6 LINE L1 11 1992 -4162 405 161 0 11 chr1 106831905 106831992 -135832361 + AluJ/FRAM SINE Alu 227 312 0 35717 87 9 25 chr1 106831992 106836199 -135828154 + L1PA6 LINE L1 1992 6151 -3 327 272 39 19 chr1 106836233 106836336 -135828017 + MIR SINE MIR 128 232 -30 189 336 58 19 chr1 106836418 106836522 -135827831 + L2 LINE L2 3190 3297 -16 30 45 0 0 chr1 106837128 106837172 -135827181 + AT_rich Low_complexity Low_complexity 1 44 0 40587 35 24 2 chr1 106837542 106843556 -135820797 - L1PA2 LINE L1 -1 6154 1 43 20 0 0 chr1 106843559 106843609 -135820744 + AT_rich Low_complexity Low_complexity 1 50 0 2258 114 0 7 chr1 106843888 106844185 -135820168 + AluSg SINE Alu 2 296 -14 21 0 0 0 chr1 106845303 106845324 -135819029 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 106845745 106845766 -135818587 + AT_rich Low_complexity Low_complexity 1 21 0 385 294 77 24 chr1 106845874 106846044 -135818309 - L2 LINE L2 -17 3296 3118 2165 118 0 0 chr1 106846131 106846419 -135817934 + AluSx SINE Alu 1 288 -24 2460 206 55 2 chr1 106846636 106847200 -135817153 + L1MB5 LINE L1 5581 6174 0 702 245 47 47 chr1 106848088 106848132 -135816221 + L2 LINE L2 3102 3145 -168 1972 154 0 3 chr1 106848132 106848430 -135815923 - AluJb SINE Alu -15 297 1 702 245 47 47 chr1 106848430 106848597 -135815756 + L2 LINE L2 3144 3313 0 27 0 0 0 chr1 106848794 106848821 -135815532 + AT_rich Low_complexity Low_complexity 1 27 0 426 293 52 51 chr1 106848984 106849143 -135815210 + MIR3 SINE MIR 42 200 -8 241 348 43 14 chr1 106851117 106851255 -135813098 - MER5A DNA MER1_type -14 175 34 * 447 313 7 14 chr1 106851133 106851277 -135813076 + MER5A DNA MER1_type 47 189 0 1473 142 12 137 chr1 106851725 106851801 -135812552 + AluJb SINE Alu 1 85 -217 2272 117 0 3 chr1 106851801 106852108 -135812245 - AluSc SINE Alu -3 306 1 1473 142 12 137 chr1 106852108 106852375 -135811978 + AluJb SINE Alu 85 301 -1 1611 183 42 17 chr1 106852394 106852749 -135811604 + MER93b LTR ERV1 10 373 0 1807 185 97 19 chr1 106853049 106853481 -135810872 + MER31B LTR ERV1 1 466 0 5893 205 64 58 chr1 106853525 106854812 -135809541 + MER31B-int LTR ERV1 10 1312 -3624 2058 162 86 5 chr1 106854812 106855206 -135809147 + MSTB LTR MaLR 1 426 0 5893 205 64 58 chr1 106855206 106855584 -135808769 + MER31B-int LTR ERV1 1312 1686 -3250 479 233 9 91 chr1 106855459 106855678 -135808675 + LTR57-int LTR ERVL 1311 1511 -3832 * 351 161 90 58 chr1 106855694 106855849 -135808504 + MER31B-int LTR ERV1 1686 1845 -3091 297 141 90 64 chr1 106855853 106855931 -135808422 + MER31B-int LTR ERV1 4180 4259 -3861 278 260 10 29 chr1 106855968 106856072 -135808281 + MER31B-int LTR ERV1 3833 3934 -2664 2003 130 51 0 chr1 106856111 106856403 -135807950 - AluSx SINE Alu -2 310 4 1377 133 10 0 chr1 106856508 106856704 -135807649 + AluSc SINE Alu 88 285 -24 2486 209 53 36 chr1 106856727 106857391 -135806962 + MER31B-int LTR ERV1 2609 3283 -1653 1435 195 68 41 chr1 106857565 106857903 -135806450 + MER31B-int LTR ERV1 4565 4911 -25 2164 175 63 25 chr1 106857905 106858351 -135806002 + MER31B LTR ERV1 1 463 -3 2514 47 0 3 chr1 106858444 106858742 -135805611 - AluY SINE Alu -14 297 1 863 275 24 0 chr1 106861609 106861820 -135802533 - MIR SINE MIR 0 262 47 255 226 17 2 chr1 106861821 106861880 -135802473 - MIR SINE MIR -58 150 99 1682 174 61 7 chr1 106861920 106862214 -135802139 + AluJb SINE Alu 1 310 -2 184 106 0 149 chr1 106862555 106862602 -135801751 - MER5B DNA MER1_type -25 153 114 196 333 227 0 chr1 106862814 106862955 -135801398 - L3 LINE CR1 -504 1073 901 302 322 35 28 chr1 106862990 106863133 -135801220 - L3 LINE CR1 -752 825 682 274 163 0 0 chr1 106863517 106863560 -135800793 - Alu SINE Alu -258 44 2 216 218 35 0 chr1 106863651 106863738 -135800615 + (TA)n Simple_repeat Simple_repeat 1 90 0 2437 86 0 3 chr1 106863992 106864294 -135800059 - AluSg SINE Alu -9 301 1 1674 159 12 72 chr1 106864379 106864712 -135799641 - 7SLRNA srpRNA srpRNA -4 316 4 309 312 99 35 chr1 106868068 106868209 -135796144 + MLT1I LTR MaLR 98 247 -162 189 107 0 0 chr1 106868944 106868972 -135795381 + (GA)n Simple_repeat Simple_repeat 1 28 0 302 115 19 0 chr1 106869585 106869637 -135794716 + CT-rich Low_complexity Low_complexity 3 55 0 694 311 19 5 chr1 106869765 106869977 -135794376 - MIR SINE MIR -43 219 5 446 286 49 27 chr1 106870740 106870925 -135793428 + MER5A DNA MER1_type 1 189 0 4489 148 75 1 chr1 106872390 106873159 -135791194 + LTR1B LTR ERV1 1 826 0 190 241 223 45 chr1 106873627 106873739 -135790614 - L2 LINE L2 0 3313 3182 2188 68 44 0 chr1 106875759 106876053 -135788300 - AluY SINE Alu -4 307 1 2449 53 0 3 chr1 106876552 106876851 -135787502 + AluY SINE Alu 1 298 -13 230 174 43 14 chr1 106879222 106879291 -135785062 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 297 0 0 0 chr1 106879382 106879415 -135784938 + (TG)n Simple_repeat Simple_repeat 2 34 0 324 253 0 42 chr1 106879429 106879524 -135784829 - L1MC4 LINE L1 -1339 6703 6613 577 335 16 0 chr1 106881569 106881760 -135782593 - MIR SINE MIR -51 211 18 333 341 29 36 chr1 106882075 106882213 -135782140 + MIR SINE MIR 3 139 -123 35 71 0 0 chr1 106882357 106882427 -135781926 + AT_rich Low_complexity Low_complexity 1 70 0 881 150 0 0 chr1 106882598 106882725 -135781628 + FLAM_C SINE Alu 1 127 -6 27 0 0 0 chr1 106882729 106882756 -135781597 + AT_rich Low_complexity Low_complexity 1 27 0 2073 134 7 0 chr1 106883062 106883361 -135780992 + AluSp SINE Alu 1 301 -12 446 50 0 0 chr1 106883887 106883947 -135780406 - AluSc SINE Alu -7 302 243 2184 67 50 0 chr1 106883970 106884253 -135780100 - AluSp SINE Alu -12 301 5 2894 198 91 26 chr1 106885099 106885837 -135778516 - LTR48 LTR ERV1 -1 786 1 2370 88 0 0 chr1 106886146 106886440 -135777913 + AluSg SINE Alu 1 294 -16 885 168 0 0 chr1 106886460 106886603 -135777750 + FRAM SINE Alu 1 40 0 1505 256 53 44 chr1 106886678 106887154 -135777199 - MER21B LTR ERV1 -125 738 227 3627 146 22 0 chr1 106887154 106887744 -135776609 - LTR26 LTR ERV1 0 603 1 1505 256 53 44 chr1 106887744 106887966 -135776387 - MER21B LTR ERV1 -636 227 8 587 293 12 18 chr1 106888202 106888369 -135775984 + MIR SINE MIR 17 182 -80 590 278 6 24 chr1 106888661 106888830 -135775523 + MER63A DNA MER1_type 43 208 -2 225 0 0 0 chr1 106888830 106888855 -135775498 + (TG)n Simple_repeat Simple_repeat 2 26 0 211 192 39 0 chr1 106888861 106888913 -135775440 + (TA)n Simple_repeat Simple_repeat 1 54 0 247 263 0 0 chr1 106889251 106889308 -135775045 + L1MEd LINE L1 445 501 -5618 748 238 61 12 chr1 106889706 106889870 -135774483 - MER5A DNA MER1_type -16 173 2 356 282 6 25 chr1 106889875 106890038 -135774315 + L1MEd LINE L1 942 1101 -5018 252 287 22 22 chr1 106890042 106890178 -135774175 + L1MEd LINE L1 1176 1311 -4999 809 164 0 15 chr1 106891219 106891353 -135773000 - FLAM_C SINE Alu 0 133 2 632 350 38 23 chr1 106891362 106891754 -135772599 + L1MEc LINE L1 35 432 -5964 276 288 24 65 chr1 106892211 106892381 -135771972 + L1MEc LINE L1 589 751 -5362 1818 145 19 35 chr1 106892446 106892756 -135771597 + AluJo SINE Alu 1 305 -7 525 192 100 46 chr1 106893022 106893152 -135771201 + MIR SINE MIR 125 261 -1 257 290 80 56 chr1 106945440 106945602 -135718751 + L2 LINE L2 2229 2394 -920 410 35 0 18 chr1 106946462 106946519 -135717834 + (TG)n Simple_repeat Simple_repeat 2 57 0 3510 168 47 6 chr1 106946683 106947350 -135717003 - L1MC1 LINE L1 -17 6316 5623 6503 23 0 0 chr1 106947350 106948095 -135716258 + L1PA4 LINE L1 5401 6152 -3 297 0 0 0 chr1 106948321 106948354 -135715999 + (TG)n Simple_repeat Simple_repeat 2 34 0 1830 97 123 15 chr1 106948533 106948802 -135715551 + AluSx SINE Alu 1 298 -14 221 234 166 33 chr1 106949115 106949243 -135715110 - MIR SINE MIR -69 139 4 346 194 48 81 chr1 106949405 106949529 -135714824 - MIR SINE MIR -29 233 114 2712 154 2 8 chr1 106949591 106950066 -135714287 - L1MA9 LINE L1 -5 6307 5836 2136 150 19 8 chr1 106950068 106950442 -135713911 - L1MA9 LINE L1 -2116 4030 3653 1757 153 63 41 chr1 106950442 106950710 -135713643 + THE1C LTR MaLR 1 281 -94 2529 113 3 22 chr1 106950710 106951081 -135713272 + THE1B LTR MaLR 1 364 0 1757 153 63 41 chr1 106951081 106951179 -135713174 + THE1C LTR MaLR 281 375 0 570 140 75 0 chr1 106951211 106951318 -135713035 + L1 LINE L1 3546 3660 -2486 3584 192 48 57 chr1 106951319 106952371 -135711982 - L1MA9 LINE L1 -2631 3515 2473 697 301 70 45 chr1 106953026 106953415 -135710938 + MER93a LTR ERV1 1 396 -7 871 237 78 108 chr1 106953567 106954056 -135710297 + L1MC4 LINE L1 7358 7831 -211 230 193 18 0 chr1 106954094 106954151 -135710202 + (TA)n Simple_repeat Simple_repeat 1 58 0 1475 161 14 53 chr1 106954217 106954502 -135709851 - AluJo SINE Alu -38 274 1 288 341 39 47 chr1 106954579 106954708 -135709645 - L2 LINE L2 0 3313 3186 12405 159 32 16 chr1 106956211 106958901 -135705452 - L1MA6 LINE L1 -3 6297 3528 562 88 0 0 chr1 106958901 106958981 -135705372 - MADE1 DNA Mariner 0 80 1 12405 159 32 16 chr1 106958981 106959685 -135704668 - L1MA6 LINE L1 -2772 3528 2836 205 129 16 81 chr1 106960378 106960440 -135703913 + A-rich Low_complexity Low_complexity 4 61 0 513 301 78 26 chr1 106960604 106960873 -135703480 - L1ME4a LINE L1 -228 5893 5611 391 130 73 0 chr1 106961271 106961589 -135702764 + (TA)n Simple_repeat Simple_repeat 1 341 0 238 252 151 47 chr1 106962336 106962594 -135701759 - L1ME4a LINE L1 -112 6009 5725 22 0 0 0 chr1 106962598 106962620 -135701733 + AT_rich Low_complexity Low_complexity 1 22 0 807 58 0 0 chr1 106962896 106963000 -135701353 - L1PA8 LINE L1 -222 5950 5847 225 0 0 0 chr1 106963102 106963127 -135701226 + (TTA)n Simple_repeat Simple_repeat 3 27 0 11052 88 5 8 chr1 106963128 106965463 -135698890 - L1PA7 LINE L1 -16 6138 3808 622 127 8 8 chr1 106965463 106965581 -135698772 - L1PA7 LINE L1 -3181 2965 2848 268 283 70 53 chr1 106965730 106965917 -135698436 - L1ME LINE L1 -299 5822 5633 24 0 0 0 chr1 106966067 106966091 -135698262 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr1 106966612 106966645 -135697708 + AT_rich Low_complexity Low_complexity 1 33 0 2128 78 0 0 chr1 106966645 106966903 -135697450 + AluY SINE Alu 37 294 -17 26 30 0 0 chr1 106966978 106967011 -135697342 + AT_rich Low_complexity Low_complexity 1 33 0 770 311 34 21 chr1 106967057 106967354 -135696999 + L1M3d LINE L1 1 564 -5327 303 355 28 0 chr1 106967462 106967569 -135696784 + L1M3d LINE L1 202 311 -5580 189 74 0 0 chr1 106967845 106967872 -135696481 + (GA)n Simple_repeat Simple_repeat 1 27 0 1350 256 9 28 chr1 106968019 106968444 -135695909 + L1M3d LINE L1 694 1110 -4781 * 2925 168 41 12 chr1 106968424 106968647 -135695706 + L1MB1 LINE L1 5254 5469 -699 279 54 0 0 chr1 106968647 106968684 -135695669 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2925 168 41 12 chr1 106968684 106968774 -135695579 + L1MB1 LINE L1 5469 5555 -613 3289 109 16 35 chr1 106968774 106969289 -135695064 + LTR10B LTR ERV1 1 505 0 2925 168 41 12 chr1 106969289 106969541 -135694812 + L1MB1 LINE L1 5555 5836 -332 495 130 44 118 chr1 106969643 106969672 -135694681 + L1MB1 LINE L1 6032 6062 -109 503 98 0 24 chr1 106969672 106969754 -135694599 - MADE1 DNA Mariner 0 80 1 495 130 44 118 chr1 106969754 106969873 -135694480 + L1MB1 LINE L1 6062 6169 -2 180 0 0 0 chr1 106969960 106969980 -135694373 + (TA)n Simple_repeat Simple_repeat 1 20 0 1622 141 4 30 chr1 106970307 106970570 -135693783 - AluJb SINE Alu -22 290 35 348 315 169 0 chr1 106971340 106971553 -135692800 - MIR SINE MIR -13 249 1 23 33 0 0 chr1 106971759 106971789 -135692564 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr1 106973838 106973885 -135690468 + AT_rich Low_complexity Low_complexity 1 47 0 270 353 67 73 chr1 106974339 106974639 -135689714 + L2 LINE L2 2904 3201 -71 187 261 72 72 chr1 106974698 106974767 -135689586 - MIR SINE MIR -165 97 29 384 179 53 60 chr1 106975126 106975142 -135689211 - L1MA10 LINE L1 -1 6333 6318 2051 213 64 45 chr1 106975142 106975781 -135688572 - L1ME1 LINE L1 -5 7580 6930 877 266 87 25 chr1 106975770 106976232 -135688121 - L1ME1 LINE L1 -4445 3301 2724 * 262 274 94 113 chr1 106976224 106976659 -135687694 + L1PBb LINE L1 11 437 -6413 * 320 363 72 5 chr1 106977275 106977468 -135686885 + L1PBb LINE L1 1000 1205 -5645 289 280 13 0 chr1 106977481 106977556 -135686797 + L1PBb LINE L1 1473 1548 -5301 6174 249 71 19 chr1 106977557 106978065 -135686288 + L1PBb LINE L1 1355 1835 -5014 240 35 0 0 chr1 106978065 106978094 -135686259 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6174 249 71 19 chr1 106978094 106980722 -135683631 + L1PBb LINE L1 1835 4828 -2021 777 346 30 25 chr1 106980723 106981281 -135683072 - L1MEc LINE L1 -5746 650 90 197 345 12 0 chr1 106981321 106981405 -135682948 + MIR SINE MIR 107 191 -71 28 0 0 0 chr1 106981938 106981966 -135682387 + AT_rich Low_complexity Low_complexity 1 28 0 218 308 19 58 chr1 106982402 106982506 -135681847 + MIR SINE MIR 17 116 -92 281 314 20 72 chr1 106982935 106983088 -135681265 + MIR SINE MIR 47 191 -71 298 263 121 30 chr1 106983368 106983467 -135680886 + MIR SINE MIR 34 141 -121 1772 163 154 0 chr1 106984219 106984557 -135679796 + MLT1B LTR MaLR 1 390 0 383 267 31 75 chr1 106984794 106984955 -135679398 + MIR3 SINE MIR 35 188 -20 1883 134 14 14 chr1 106984955 106985246 -135679107 - AluSx SINE Alu -19 293 3 344 286 22 0 chr1 106985308 106985399 -135678954 + MER58 DNA MER1_type 7 99 -2321 632 269 112 15 chr1 106985445 106985642 -135678711 - MIR SINE MIR -31 231 16 999 147 23 100 chr1 106985812 106986111 -135678242 + MER58 DNA MER1_type 2145 2420 0 27 49 0 0 chr1 106986248 106986289 -135678064 + AT_rich Low_complexity Low_complexity 1 41 0 10525 208 33 57 chr1 106986648 106991102 -135673251 + L1M2b LINE L1 1 4271 -2937 44060 37 1 3 chr1 106991103 106997270 -135667083 + L1PA3 LINE L1 1 6155 0 923 151 5 21 chr1 106997263 106997449 -135666904 + L1M2b LINE L1 4253 4435 -2773 * 634 108 0 20 chr1 106997450 106997544 -135666809 + L1MA4A LINE L1 5688 5775 -376 276 30 0 0 chr1 106997544 106997577 -135666776 + (TG)n Simple_repeat Simple_repeat 1 33 0 634 108 0 20 chr1 106997577 106997594 -135666759 + L1MA4A LINE L1 5775 5791 -360 203 149 0 43 chr1 106997595 106997642 -135666711 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 3055 125 10 13 chr1 106997642 106998163 -135666190 + L1MA4A LINE L1 5785 6303 0 384 330 113 9 chr1 106998678 106998908 -135665445 - MIR SINE MIR -3 259 6 2204 120 8 41 chr1 107000171 107000538 -135663815 - THE1A LTR MaLR 0 355 1 11804 94 4 1 chr1 107000538 107002114 -135662239 - THE1A-int LTR MaLR 0 1580 1 2487 93 8 8 chr1 107002114 107002469 -135661884 - THE1A LTR MaLR 0 355 1 723 199 131 5 chr1 107003453 107003644 -135660709 + MER20 DNA MER1_type 1 215 -4 188 57 0 57 chr1 107003678 107003713 -135660640 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2458 78 0 0 chr1 107004017 107004323 -135660030 - AluSq SINE Alu -7 306 1 219 305 12 24 chr1 107004409 107004491 -135659862 + G-rich Low_complexity Low_complexity 1 81 0 231 246 188 0 chr1 107005378 107005447 -135658906 - L2 LINE L2 -8 3264 3183 294 288 63 18 chr1 107005465 107005576 -135658777 - MIR SINE MIR -15 247 132 1585 181 31 31 chr1 107006801 107007150 -135657203 + MLT1A2 LTR MaLR 1 349 -25 2398 87 3 3 chr1 107008765 107009077 -135655276 + AluSp SINE Alu 2 313 0 323 387 63 30 chr1 107009908 107010241 -135654112 - L3 LINE CR1 -1200 377 34 186 231 92 31 chr1 107011001 107011066 -135653287 + MIR3 SINE MIR 132 200 -8 331 301 31 73 chr1 107011210 107011499 -135652854 + L2 LINE L2 2303 2579 -735 264 77 0 0 chr1 107011992 107012031 -135652322 + (GA)n Simple_repeat Simple_repeat 2 40 0 281 314 47 64 chr1 107012883 107013055 -135651298 + MIR SINE MIR 19 187 -75 331 310 155 16 chr1 107013904 107014091 -135650262 + MIR SINE MIR 3 215 -47 219 69 0 0 chr1 107014149 107014178 -135650175 + (CAT)n Simple_repeat Simple_repeat 3 31 0 274 306 44 49 chr1 107014910 107015093 -135649260 + L2 LINE L2 2974 3155 -158 816 259 89 100 chr1 107015238 107015681 -135648672 + MER110 LTR ERV1 68 484 0 258 32 0 0 chr1 107015819 107015850 -135648503 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 666 238 166 5 chr1 107016309 107016502 -135647851 - MER58A DNA MER1_type 0 224 1 211 270 60 20 chr1 107016517 107016617 -135647736 + MIR SINE MIR 144 247 -15 * 420 353 75 21 chr1 107016587 107016921 -135647432 - L2 LINE L2 -1391 1923 1572 1138 86 99 0 chr1 107017826 107017988 -135646365 + AluSp SINE Alu 134 311 -2 206 272 78 68 chr1 107019870 107019973 -135644380 - MIR SINE MIR -66 196 93 192 77 0 0 chr1 107023024 107023050 -135641303 + (A)n Simple_repeat Simple_repeat 1 26 0 312 359 132 7 chr1 107024270 107024551 -135639802 + L2 LINE L2 2432 2747 -567 903 125 151 0 chr1 107024603 107024755 -135639598 + MER46A DNA MER2_type 1 175 -61 2159 98 10 10 chr1 107024997 107025303 -135639050 + AluSg SINE Alu 2 307 -3 23 0 0 0 chr1 107025632 107025655 -135638698 + AT_rich Low_complexity Low_complexity 1 23 0 271 212 91 23 chr1 107026711 107026843 -135637510 - L1M4 LINE L1 -2889 3257 3117 1031 181 5 39 chr1 107026979 107027203 -135637150 + AluJb SINE Alu 88 304 0 453 312 174 33 chr1 107027204 107027832 -135636521 - L1M4 LINE L1 -3248 2898 2183 282 106 0 0 chr1 107027868 107027915 -135636438 + (TG)n Simple_repeat Simple_repeat 2 48 0 1487 208 50 55 chr1 107028114 107028498 -135635855 + MLT1B LTR MaLR 4 385 -5 229 194 8 104 chr1 107030488 107030622 -135633731 + GA-rich Low_complexity Low_complexity 5 125 0 189 94 0 0 chr1 107031843 107031875 -135632478 + (CAG)n Simple_repeat Simple_repeat 1 32 0 467 200 0 18 chr1 107033335 107033445 -135630908 - L1MC5 LINE L1 -45 7916 7809 476 202 8 48 chr1 107034395 107034475 -135629878 - Charlie1 DNA MER1_type -5 2756 2681 2558 59 0 0 chr1 107034475 107034782 -135629571 - AluY SINE Alu -4 307 1 476 202 8 48 chr1 107034782 107034825 -135629528 - Charlie1 DNA MER1_type -80 2681 2638 2217 104 0 19 chr1 107034832 107035139 -135629214 - AluSq SINE Alu -12 301 1 378 309 16 24 chr1 107035193 107035319 -135629034 - Charlie1 DNA MER1_type -2617 144 20 24 67 0 0 chr1 107035541 107035586 -135628767 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr1 107035887 107035927 -135628426 + AT_rich Low_complexity Low_complexity 1 40 0 1779 161 3 7 chr1 107035969 107036260 -135628093 - AluJo SINE Alu -20 292 3 22 0 0 0 chr1 107036294 107036316 -135628037 + AT_rich Low_complexity Low_complexity 1 22 0 190 306 144 18 chr1 107036763 107036874 -135627479 - L3b LINE CR1 -119 1464 1340 1883 74 0 4 chr1 107037175 107037417 -135626936 + AluY SINE Alu 60 300 -11 869 172 95 60 chr1 107037820 107038105 -135626248 - L1MC3 LINE L1 -12 7773 7479 2038 131 0 0 chr1 107038290 107038572 -135625781 - AluSx SINE Alu -14 298 17 1399 59 0 0 chr1 107038617 107038787 -135625566 - AluY SINE Alu -11 300 131 1567 159 69 14 chr1 107038803 107039093 -135625260 - MER2 DNA MER2_type -1 344 39 786 163 0 15 chr1 107040406 107040541 -135623812 - FLAM_C SINE Alu 0 133 1 474 280 28 21 chr1 107040706 107040849 -135623504 - MIR SINE MIR 0 262 119 180 322 23 35 chr1 107040896 107040983 -135623370 + L2 LINE L2 1704 1789 -1525 198 274 129 32 chr1 107042038 107042100 -135622253 + L2 LINE L2 3199 3266 -47 2117 106 0 10 chr1 107043041 107043353 -135621000 + AluY SINE Alu 1 309 -2 26 0 0 0 chr1 107043645 107043671 -135620682 + AT_rich Low_complexity Low_complexity 1 26 0 684 266 89 10 chr1 107044239 107044442 -135619911 + MIR SINE MIR 12 230 -32 2362 65 0 19 chr1 107044575 107044885 -135619468 + AluY SINE Alu 1 304 -7 333 228 76 58 chr1 107046052 107046305 -135618048 + L1MC5 LINE L1 6996 7260 -728 877 274 71 34 chr1 107046429 107046992 -135617361 + L1MC5 LINE L1 7298 7881 -80 23 0 0 0 chr1 107047010 107047033 -135617320 + AT_rich Low_complexity Low_complexity 1 23 0 307 333 74 9 chr1 107047213 107047321 -135617032 - MER5B DNA MER1_type 0 178 64 334 279 99 6 chr1 107048684 107048845 -135615508 + L1ME LINE L1 5524 5699 -422 1993 135 0 3 chr1 107049390 107049687 -135614666 + AluSx SINE Alu 1 296 -16 397 267 8 76 chr1 107052317 107052448 -135611905 + MIR SINE MIR 85 206 -56 377 365 109 31 chr1 107054942 107055483 -135608870 - L2 LINE L2 -67 3205 2621 188 304 29 69 chr1 107055519 107055621 -135608732 + MER5C DNA MER1_type 1 98 -226 276 356 19 0 chr1 107055688 107055792 -135608561 - L2 LINE L2 -715 2599 2494 322 329 170 50 chr1 107056057 107056881 -135607472 - L2 LINE L2 -1240 2074 1152 28 29 0 0 chr1 107058520 107058555 -135605798 + AT_rich Low_complexity Low_complexity 1 35 0 200 189 0 0 chr1 107058688 107058725 -135605628 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 488 270 46 11 chr1 107059725 107059899 -135604454 - MER104 DNA Tc2 0 180 1 1075 251 51 17 chr1 107060990 107061570 -135602783 - L1ME3A LINE L1 -5 6165 5436 201 370 112 22 chr1 107061891 107062167 -135602186 - L2 LINE L2 -537 2777 2477 499 233 158 14 chr1 107062570 107062716 -135601637 - FRAM SINE Alu -9 167 1 2290 62 45 0 chr1 107062728 107063017 -135601336 - AluY SINE Alu -9 302 1 251 283 147 62 chr1 107063404 107063565 -135600788 + L2 LINE L2 2930 3109 -204 1988 114 6 41 chr1 107063565 107063881 -135600472 - AluSx SINE Alu -7 305 1 251 283 147 62 chr1 107063881 107063896 -135600457 + L2 LINE L2 3109 3121 -192 1089 165 28 63 chr1 107063993 107064248 -135600105 + L1MA7 LINE L1 5860 6105 -186 986 180 67 6 chr1 107064248 107064426 -135599927 + MER21B LTR ERV1 1 189 -674 1940 125 67 44 chr1 107064428 107064788 -135599565 + MER21A LTR ERV1 538 905 -26 727 152 82 6 chr1 107064805 107064976 -135599377 + L1MA7 LINE L1 6106 6289 -2 22 56 0 0 chr1 107066023 107066059 -135598294 + AT_rich Low_complexity Low_complexity 1 36 0 1679 171 87 13 chr1 107067330 107067640 -135596713 + MER7A DNA MER2_type 1 331 -15 289 308 0 39 chr1 107068386 107068490 -135595863 - L2 LINE L2 0 3272 3173 363 287 56 28 chr1 107069706 107069849 -135594504 - MIR SINE MIR -111 151 5 378 0 0 0 chr1 107070961 107071003 -135593350 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1877 147 7 0 chr1 107071003 107071282 -135593071 - AluSx SINE Alu -31 281 1 290 25 0 25 chr1 107073079 107073119 -135591234 + (CCCCCT)n Simple_repeat Simple_repeat 2 40 0 6414 55 22 71 chr1 107073124 107074973 -135589380 + SVA Other Other 32 1386 0 387 0 0 0 chr1 107075322 107075365 -135588988 + (CA)n Simple_repeat Simple_repeat 2 44 0 3033 246 159 28 chr1 107075528 107075967 -135588386 - L1ME2 LINE L1 -114 6119 5739 2326 95 0 3 chr1 107075967 107076271 -135588082 + AluSc SINE Alu 1 303 -6 3033 246 159 28 chr1 107076271 107076570 -135587783 - L1ME2 LINE L1 -494 5739 5481 1957 119 76 48 chr1 107076570 107076924 -135587429 + THE1B LTR MaLR 1 364 0 3033 246 159 28 chr1 107076924 107078546 -135585807 - L1ME2 LINE L1 -752 5481 3436 1656 240 90 17 chr1 107078840 107079584 -135584769 - L1ME2 LINE L1 -3200 3015 2214 4690 150 45 7 chr1 107079612 107080308 -135584045 - L1MC1 LINE L1 0 6333 5598 2052 118 3 7 chr1 107080308 107080595 -135583758 - AluSp SINE Alu -27 286 1 4690 150 45 7 chr1 107080595 107080751 -135583602 - L1MC1 LINE L1 -735 5598 5449 2383 231 55 32 chr1 107080755 107082143 -135582210 - L1ME1 LINE L1 -44 6122 4697 485 274 103 40 chr1 107082135 107082456 -135581897 - L1ME2 LINE L1 -4278 2118 1778 * 508 268 139 55 chr1 107082515 107083255 -135581098 - L1ME2 LINE L1 -4883 1513 661 305 336 70 39 chr1 107083644 107083903 -135580450 - L1ME2 LINE L1 -6023 373 107 21 0 0 0 chr1 107085321 107085342 -135579011 + AT_rich Low_complexity Low_complexity 1 21 0 777 254 33 22 chr1 107086509 107086690 -135577663 + MER5A DNA MER1_type 7 189 0 379 237 162 46 chr1 107086793 107086966 -135577387 + MIR SINE MIR 60 252 -10 21 0 0 0 chr1 107088042 107088063 -135576290 + AT_rich Low_complexity Low_complexity 1 21 0 252 269 112 10 chr1 107089176 107089373 -135574980 + L1ME LINE L1 4940 5156 -990 905 169 58 0 chr1 107089593 107089765 -135574588 + L1PA16 LINE L1 5968 6149 -17 650 102 19 0 chr1 107089767 107089875 -135574478 + (GGGA)n Simple_repeat Simple_repeat 4 113 0 194 0 0 37 chr1 107089873 107089900 -135574453 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 * 1025 150 12 17 chr1 107089991 107090164 -135574189 - FRAM SINE Alu -12 164 1 581 268 75 73 chr1 107090219 107090616 -135573737 + L1ME LINE L1 5320 5720 -442 2200 116 0 3 chr1 107090616 107090927 -135573426 - AluSg SINE Alu 0 310 1 581 268 75 73 chr1 107090927 107091022 -135573331 + L1ME LINE L1 5720 5813 -349 2132 97 17 0 chr1 107091250 107091538 -135572815 + AluY SINE Alu 1 293 -18 23 0 0 0 chr1 107092375 107092398 -135571955 + AT_rich Low_complexity Low_complexity 1 23 0 692 144 0 0 chr1 107092479 107092583 -135571770 - AluSg/x SINE Alu -21 291 188 1358 125 0 62 chr1 107092583 107092807 -135571546 - AluSg SINE Alu -93 217 8 306 234 190 89 chr1 107093025 107093419 -135570934 + L1MC5 LINE L1 6994 7427 -534 2282 66 35 3 chr1 107093419 107093707 -135570646 - AluY SINE Alu -14 297 1 206 217 0 0 chr1 107093746 107093792 -135570561 + A-rich Low_complexity Low_complexity 4 49 0 239 245 194 19 chr1 107093796 107093951 -135570402 + L1MC5 LINE L1 7614 7795 -166 323 298 91 8 chr1 107094147 107094268 -135570085 + L1MB2 LINE L1 3171 3301 -2845 368 298 158 23 chr1 107094568 107095044 -135569309 + L1MB2 LINE L1 4557 5096 -1050 1614 207 3 10 chr1 107095150 107095464 -135568889 + AluJb SINE Alu 1 312 0 306 270 66 15 chr1 107095553 107095714 -135568639 + L1MB2 LINE L1 5409 5582 -582 1326 219 8 87 chr1 107096147 107096536 -135567817 + MLT1A2 LTR MaLR 4 361 -13 768 146 3 8 chr1 107096554 107096693 -135567660 + L1MB2 LINE L1 5767 5907 -264 766 127 6 127 chr1 107096697 107096788 -135567565 - MER46A DNA MER2_type -97 139 73 2192 46 52 46 chr1 107096788 107097093 -135567260 + AluY SINE Alu 1 307 -4 766 127 6 127 chr1 107097093 107097158 -135567195 - MER46A DNA MER2_type -163 73 2 960 158 85 62 chr1 107097158 107097418 -135566935 + L1MB2 LINE L1 5904 6169 -2 251 178 148 20 chr1 107097532 107097633 -135566720 - L1ME4a LINE L1 -40 6081 5968 322 308 96 19 chr1 107098025 107098181 -135566172 - MIR SINE MIR -65 197 30 1767 68 85 0 chr1 107098185 107098421 -135565932 + AluY SINE Alu 47 302 -9 861 206 67 44 chr1 107099357 107099446 -135564907 - MER33 DNA MER1_type -2263 322 236 2093 89 45 0 chr1 107099446 107099737 -135564616 + AluY SINE Alu 1 304 -7 1688 167 24 10 chr1 107099745 107100038 -135564315 + AluJo SINE Alu 14 310 -2 861 206 67 44 chr1 107100038 107100254 -135564099 - MER33 DNA MER1_type -2355 230 1 21 36 0 0 chr1 107100323 107100351 -135564002 + AT_rich Low_complexity Low_complexity 1 28 0 517 279 57 41 chr1 107100456 107101040 -135563313 - L1MEc LINE L1 -4646 1664 998 202 293 111 10 chr1 107101212 107101311 -135563042 - MIR SINE MIR -70 192 84 2159 122 0 25 chr1 107101494 107101814 -135562539 + AluSx SINE Alu 1 312 0 1072 243 62 73 chr1 107101921 107102564 -135561789 + L1MC5 LINE L1 7255 7890 -71 799 154 11 104 chr1 107102820 107103002 -135561351 - Tigger2a DNA MER2_type -269 165 1 1658 152 43 4 chr1 107103029 107103305 -135561048 - AluJo SINE Alu -15 297 11 760 204 193 22 chr1 107103382 107103656 -135560697 + MLT1D LTR MaLR 131 451 -54 189 107 0 0 chr1 107103675 107103703 -135560650 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 191 326 71 20 chr1 107104190 107104288 -135560065 - L2 LINE L2 -15 3298 3196 246 312 128 0 chr1 107105370 107105511 -135558842 + L1MC/D LINE L1 5482 5640 -481 280 161 36 161 chr1 107105528 107105665 -135558688 + L1MC/D LINE L1 5713 5832 -1976 1115 265 66 27 chr1 107105691 107106102 -135558251 + L1ME1 LINE L1 20 446 -5950 * 2124 234 73 31 chr1 107106080 107106685 -135557668 + L1ME1 LINE L1 2774 3425 -2790 2155 88 31 3 chr1 107106685 107106979 -135557374 + AluSg SINE Alu 1 302 -8 2124 234 73 31 chr1 107106979 107107204 -135557149 + L1ME1 LINE L1 3425 3639 -2576 2914 219 65 42 chr1 107107219 107107390 -135556963 + L1ME1 LINE L1 4133 4299 -1936 1901 136 18 0 chr1 107107390 107107669 -135556684 + AluSx SINE Alu 1 284 -28 2914 219 65 42 chr1 107107669 107108425 -135555928 + L1ME1 LINE L1 4299 5037 -1198 1726 190 10 0 chr1 107108425 107108714 -135555639 + AluJo SINE Alu 1 292 -20 2914 219 65 42 chr1 107108714 107109803 -135554550 + L1ME1 LINE L1 5037 6230 -5 2130 100 0 51 chr1 107109829 107109975 -135554378 + AluSc SINE Alu 1 124 -185 2275 91 0 0 chr1 107109975 107110272 -135554081 + AluY SINE Alu 1 297 -14 2130 100 0 51 chr1 107110272 107110436 -135553917 + AluSc SINE Alu 124 295 -14 21 0 0 0 chr1 107110502 107110523 -135553830 + AT_rich Low_complexity Low_complexity 1 21 0 2466 68 13 0 chr1 107110607 107110914 -135553439 - AluY SINE Alu 0 311 1 1981 51 8 0 chr1 107111174 107111410 -135552943 + AluY SINE Alu 62 299 -12 1248 34 0 0 chr1 107111852 107112000 -135552353 - L1PA4 LINE L1 -10 6145 5998 2154 97 9 50 chr1 107112147 107112466 -135551887 + AluSx SINE Alu 1 306 -6 354 286 62 9 chr1 107113483 107113595 -135550758 + MIR SINE MIR 27 144 -64 217 302 10 21 chr1 107114549 107114645 -135549708 + C-rich Low_complexity Low_complexity 6 100 0 2396 65 3 0 chr1 107116094 107116387 -135547966 - AluSp SINE Alu -19 294 1 2560 56 7 0 chr1 107116534 107116838 -135547515 + AluSp SINE Alu 1 306 -7 371 307 26 79 chr1 107117380 107117495 -135546858 + MIR SINE MIR 46 145 -117 2235 112 0 0 chr1 107117495 107117799 -135546554 + AluSc SINE Alu 1 304 -5 371 307 26 79 chr1 107117799 107117911 -135546442 + MIR SINE MIR 145 261 -1 927 224 33 8 chr1 107118663 107118904 -135545449 + L1MB8 LINE L1 5923 6169 -9 550 283 33 11 chr1 107118948 107119132 -135545221 - HAL1 LINE L1 -721 1786 1599 679 291 27 29 chr1 107119290 107119699 -135544654 - L1MC4a LINE L1 -1830 5978 5571 280 312 102 0 chr1 107119762 107119948 -135544405 + L1MC/D LINE L1 5254 5458 -2350 1152 279 84 65 chr1 107120012 107120828 -135543525 + HAL1 LINE L1 1599 2435 -72 3002 125 82 43 chr1 107120828 107121411 -135542942 + MER4B LTR ERV1 1 606 -4 1152 279 84 65 chr1 107121411 107121485 -135542868 + HAL1 LINE L1 2435 2506 -1 2084 104 0 14 chr1 107121946 107122224 -135542129 + AluSq SINE Alu 1 274 -39 207 0 0 0 chr1 107122224 107122247 -135542106 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 206 189 426 8 chr1 107122634 107122756 -135541597 + L3 LINE CR1 679 851 -726 2868 102 48 0 chr1 107122762 107123195 -135541158 + L1PA13 LINE L1 5710 6163 0 814 311 47 0 chr1 107123354 107123611 -135540742 - L2 LINE L2 0 3313 3045 233 319 44 0 chr1 107123961 107124052 -135540301 + L3 LINE CR1 969 1063 -514 2344 103 0 0 chr1 107124486 107124786 -135539567 - AluSx SINE Alu -12 300 1 1049 263 96 49 chr1 107124786 107125427 -135538926 + L2 LINE L2 2660 3313 0 1242 302 58 17 chr1 107125554 107125964 -135538389 + L3 LINE CR1 1144 1570 -7 2269 89 0 10 chr1 107125973 107126275 -135538078 + AluSg SINE Alu 1 299 -11 183 100 0 0 chr1 107126738 107126768 -135537585 + (TCTCTG)n Simple_repeat Simple_repeat 5 34 0 2300 96 3 10 chr1 107126993 107127296 -135537057 + AluSp SINE Alu 1 301 -12 987 296 71 41 chr1 107127831 107127880 -135536473 + L2 LINE L2 2833 2879 -434 844 249 61 0 chr1 107127880 107128077 -135536276 + MER63A DNA MER1_type 1 209 -1 987 296 71 41 chr1 107128077 107128494 -135535859 + L2 LINE L2 2879 3313 0 2324 95 0 3 chr1 107128523 107128818 -135535535 + AluSg SINE Alu 1 294 -16 275 232 130 0 chr1 107128832 107128901 -135535452 + L2 LINE L2 3194 3271 -1 279 282 14 0 chr1 107129614 107129685 -135534668 - L2 LINE L2 0 3313 3242 21 89 0 0 chr1 107129737 107129793 -135534560 + AT_rich Low_complexity Low_complexity 1 56 0 443 243 94 112 chr1 107129807 107130074 -135534279 + L2 LINE L2 3052 3313 0 * 672 317 39 19 chr1 107130055 107130367 -135533986 - L2 LINE L2 0 3313 2996 24 67 0 0 chr1 107130447 107130492 -135533861 + AT_rich Low_complexity Low_complexity 1 45 0 2138 111 3 0 chr1 107130504 107130793 -135533560 + AluSp SINE Alu 1 290 -23 218 286 0 0 chr1 107131078 107131141 -135533212 - L2 LINE L2 -295 2977 2915 27 0 0 0 chr1 107131925 107131952 -135532401 + AT_rich Low_complexity Low_complexity 1 27 0 228 135 0 0 chr1 107132024 107132061 -135532292 + (GGA)n Simple_repeat Simple_repeat 3 39 0 1291 272 97 66 chr1 107135706 107135728 -135528625 + L1MEc LINE L1 108 128 -6268 2373 119 13 21 chr1 107135728 107136106 -135528247 - THE1C LTR MaLR 0 375 1 1291 272 97 66 chr1 107136106 107136856 -135527497 + L1MEc LINE L1 128 853 -5543 2040 144 10 0 chr1 107136856 107137161 -135527192 + AluSx SINE Alu 1 308 -4 1291 272 97 66 chr1 107137161 107137172 -135527181 + L1MEc LINE L1 853 862 -5534 2257 106 0 10 chr1 107137172 107137473 -135526880 + AluY SINE Alu 1 298 -13 1291 272 97 66 chr1 107137473 107138118 -135526235 + L1MEc LINE L1 862 1583 -4813 558 180 4 11 chr1 107138126 107138374 -135525979 + AluJb SINE Alu 1 309 -3 693 241 55 51 chr1 107138376 107138591 -135525762 + L1MEc LINE L1 1587 1805 -4591 1319 196 3 107 chr1 107138591 107138937 -135525416 - AluJo SINE Alu -2 310 1 693 241 55 51 chr1 107138937 107139032 -135525321 + L1MEc LINE L1 1805 1898 -4498 579 239 81 88 chr1 107139167 107139230 -135525123 + L1MEc LINE L1 1919 1981 -4415 1942 115 58 4 chr1 107139230 107139508 -135524845 - AluSx SINE Alu -19 293 1 579 239 81 88 chr1 107139508 107139744 -135524609 + L1MEc LINE L1 1981 2219 -4177 2202 78 0 4 chr1 107139744 107140054 -135524299 - AluY SINE Alu 0 309 1 579 239 81 88 chr1 107140054 107140181 -135524172 + L1MEc LINE L1 2219 2345 -4051 41 36 0 0 chr1 107140181 107140236 -135524117 + AT_rich Low_complexity Low_complexity 1 55 0 721 181 0 95 chr1 107140536 107140746 -135523607 + 7SK RNA RNA 1 190 -3 380 226 0 161 chr1 107141066 107141221 -135523132 - MER94 DNA DNA -4 130 1 1199 175 6 8 chr1 107141277 107141589 -135522764 - MLT1A1 LTR MaLR 0 365 1 522 209 30 0 chr1 107141599 107141733 -135522620 - MER3 DNA MER1_type -28 181 44 1083 259 130 32 chr1 107141983 107142482 -135521871 + MLT1H LTR MaLR 2 549 0 2274 78 34 3 chr1 107142542 107142837 -135521516 + AluY SINE Alu 1 304 -7 533 315 97 21 chr1 107142847 107143126 -135521227 - MLT1K LTR MaLR -162 426 127 2266 164 28 84 chr1 107143214 107143749 -135520604 - MLT1D LTR MaLR 0 505 1 230 223 207 25 chr1 107144459 107144580 -135519773 + MIR SINE MIR 88 230 -32 249 254 0 0 chr1 107144622 107144677 -135519676 - L2 LINE L2 -8 3264 3210 365 299 57 49 chr1 107144883 107144962 -135519391 - MLT1K LTR MaLR -155 433 356 4656 75 139 64 chr1 107144962 107145070 -135519283 - LTR12 LTR ERV1 0 826 728 2268 54 0 54 chr1 107145070 107145367 -135518986 + AluY SINE Alu 17 297 -14 4656 75 139 64 chr1 107145367 107146026 -135518327 - LTR12 LTR ERV1 -98 728 1 365 299 57 49 chr1 107146026 107146190 -135518163 - MLT1K LTR MaLR -232 356 188 279 0 0 0 chr1 107146319 107146350 -135518003 + (CA)n Simple_repeat Simple_repeat 2 32 0 369 310 71 36 chr1 107146455 107146854 -135517499 - MLT1K LTR MaLR -6 582 145 234 247 0 65 chr1 107146936 107147029 -135517324 - L2 LINE L2 0 3313 3227 33 43 0 0 chr1 107147386 107147433 -135516920 + AT_rich Low_complexity Low_complexity 1 47 0 1803 149 15 49 chr1 107148018 107148363 -135515990 + L1MB4 LINE L1 5802 6134 -46 2356 110 0 0 chr1 107148363 107148672 -135515681 - AluSx SINE Alu -3 309 1 1803 149 15 49 chr1 107148672 107148716 -135515637 + L1MB4 LINE L1 6134 6178 -2 675 168 15 0 chr1 107148773 107148910 -135515443 - MER53 DNA DNA 0 189 51 341 225 22 0 chr1 107148912 107149001 -135515352 - MER53 DNA DNA -97 92 2 217 292 123 0 chr1 107149004 107149069 -135515284 - L2 LINE L2 -31 3241 3169 306 322 111 31 chr1 107149497 107149758 -135514595 + L2 LINE L2 2594 2875 -439 287 244 17 104 chr1 107149902 107150132 -135514221 + MER112 DNA MER1_type 19 228 -32 255 119 0 0 chr1 107150169 107150211 -135514142 + MADE1 DNA Mariner 39 80 0 264 208 38 0 chr1 107151730 107151783 -135512570 - L2 LINE L2 0 3313 3259 2064 179 11 39 chr1 107152153 107152617 -135511736 + L1MD3 LINE L1 7528 7978 -17 217 355 91 16 chr1 107152935 107153056 -135511297 - L2 LINE L2 -1 3271 3142 441 258 23 47 chr1 107153061 107153189 -135511164 - L2 LINE L2 -2 3311 3187 2012 128 0 26 chr1 107154107 107154411 -135509942 - AluSx SINE Alu -16 296 1 780 301 83 40 chr1 107155029 107155451 -135508902 - LTR16B LTR ERVL -19 445 6 7117 60 0 0 chr1 107155654 107156607 -135507746 - L1PA6 LINE L1 -3 6151 5199 23 0 0 0 chr1 107156667 107156690 -135507663 + AT_rich Low_complexity Low_complexity 1 23 0 257 246 0 31 chr1 107156825 107156890 -135507463 - L2 LINE L2 0 3313 3251 27 0 0 0 chr1 107156986 107157013 -135507340 + AT_rich Low_complexity Low_complexity 1 27 0 252 0 0 0 chr1 107157901 107157929 -135506424 + (A)n Simple_repeat Simple_repeat 1 28 0 1459 71 10 15 chr1 107158031 107158228 -135506125 + AluY SINE Alu 105 300 -11 11887 164 75 9 chr1 107159002 107161306 -135503047 + L1MC1 LINE L1 9 2466 -3960 * 21607 138 21 14 chr1 107161296 107163481 -135500872 + L1MA3 LINE L1 16 2184 -5381 2214 112 3 0 chr1 107163481 107163775 -135500578 + AluSp SINE Alu 1 295 -18 21607 138 21 14 chr1 107163775 107164563 -135499790 + L1MA3 LINE L1 2184 3020 -4545 2856 113 32 7 chr1 107164563 107164996 -135499357 - MLT2A1 LTR ERVL 0 444 1 21607 138 21 14 chr1 107164996 107165445 -135498908 + L1MA3 LINE L1 3020 3464 -4101 1485 191 41 29 chr1 107165445 107165759 -135498594 + THE1C LTR MaLR 55 372 -3 13705 170 59 17 chr1 107165763 107166141 -135498212 + L1MA3 LINE L1 3483 3844 -3880 234 0 0 0 chr1 107166141 107166167 -135498186 + (TG)n Simple_repeat Simple_repeat 2 27 0 13705 170 59 17 chr1 107166167 107167961 -135496392 + L1MA3 LINE L1 3844 5562 -2162 3419 72 13 30 chr1 107167961 107168422 -135495931 - MLT2A2 LTR ERVL 0 453 1 13705 170 59 17 chr1 107168422 107170315 -135494038 + L1MA3 LINE L1 5562 7724 0 5399 196 46 28 chr1 107170333 107170433 -135493920 + L1MC1 LINE L1 2463 2560 -4053 1980 126 0 20 chr1 107170433 107170760 -135493593 + AluSx SINE Alu 1 321 0 5399 196 46 28 chr1 107170760 107173678 -135490675 + L1MC1 LINE L1 2560 5424 -1189 2059 98 0 7 chr1 107173678 107173952 -135490401 + AluSx SINE Alu 32 303 -9 1986 137 7 0 chr1 107173961 107174239 -135490114 + AluSx SINE Alu 6 285 -27 249 33 0 0 chr1 107174240 107174270 -135490083 + (CA)n Simple_repeat Simple_repeat 2 31 0 5399 196 46 28 chr1 107174270 107175224 -135489129 + L1MC1 LINE L1 5430 6613 0 790 190 98 0 chr1 107176152 107176326 -135488027 - LTR47A LTR ERVL -1 451 261 22 0 0 0 chr1 107176561 107176583 -135487770 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 107176735 107176775 -135487578 + AT_rich Low_complexity Low_complexity 1 40 0 2039 147 7 0 chr1 107176871 107177178 -135487175 - AluSx SINE Alu -3 309 1 324 276 64 32 chr1 107177484 107177640 -135486713 - HAL1b LINE L1 -411 937 777 1510 203 7 4 chr1 107177721 107177997 -135486356 + AluJo SINE Alu 3 279 -33 27 73 0 0 chr1 107178002 107178057 -135486296 + AT_rich Low_complexity Low_complexity 1 55 0 450 375 45 11 chr1 107178351 107178467 -135485886 - HAL1 LINE L1 -585 1922 1811 347 60 0 0 chr1 107178467 107178517 -135485836 - L1PA10 LINE L1 -4 6164 6115 450 375 45 11 chr1 107178517 107178669 -135485684 - HAL1 LINE L1 -696 1811 1645 1573 145 4 8 chr1 107178888 107179123 -135485230 + AluJb SINE Alu 61 294 -18 235 309 0 15 chr1 107179233 107179301 -135485052 + CT-rich Low_complexity Low_complexity 3 69 0 38290 77 9 9 chr1 107179301 107185446 -135478907 - L1PA4 LINE L1 -2 6153 12 543 125 0 0 chr1 107185553 107185633 -135478720 - MADE1 DNA Mariner 0 80 1 297 0 0 0 chr1 107186124 107186157 -135478196 + (CA)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr1 107186467 107186489 -135477864 + (TTG)n Simple_repeat Simple_repeat 2 23 0 265 322 62 13 chr1 107187494 107187662 -135476691 - MIR SINE MIR -46 216 40 454 325 40 0 chr1 107188670 107188821 -135475532 - L2 LINE L2 0 3272 3116 211 271 42 0 chr1 107188816 107188864 -135475489 + L2 LINE L2 3219 3268 -4 * 1757 32 0 9 chr1 107189309 107189527 -135474826 + L1PA5 LINE L1 5939 6154 0 186 191 0 0 chr1 107189658 107189700 -135474653 + (TG)n Simple_repeat Simple_repeat 1 42 0 1725 159 16 25 chr1 107189795 107189980 -135474373 - AluJb SINE Alu 0 312 130 189 0 0 0 chr1 107189980 107190001 -135474352 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1725 159 16 25 chr1 107190001 107190130 -135474223 - AluJb SINE Alu -182 130 1 186 351 0 0 chr1 107190367 107190424 -135473929 - L2 LINE L2 -48 3224 3168 448 289 96 24 chr1 107190982 107191190 -135473163 + MLT1J LTR MaLR 239 461 -50 581 283 33 62 chr1 107193125 107193309 -135471044 - MIR SINE MIR -10 252 75 2327 97 3 0 chr1 107193309 107193608 -135470745 + AluSq SINE Alu 3 302 -11 581 283 33 62 chr1 107193608 107193663 -135470690 - MIR SINE MIR -187 75 20 536 301 10 5 chr1 107194004 107194203 -135470150 + L1ME3A LINE L1 5740 5939 -231 198 0 0 0 chr1 107196583 107196605 -135467748 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3468 231 68 15 chr1 107196673 107198205 -135466148 - L1MD2 LINE L1 -2 6637 5031 320 158 26 26 chr1 107199145 107199221 -135465132 - L1 LINE L1 -1277 4869 4794 225 227 15 30 chr1 107199248 107199314 -135465039 - L1MD2 LINE L1 -4357 2069 2005 * 237 308 39 0 chr1 107199272 107199376 -135464977 + L1MC4 LINE L1 6614 6721 -1321 236 244 0 0 chr1 107199414 107199459 -135464894 + (CA)n Simple_repeat Simple_repeat 2 46 0 31 26 0 0 chr1 107199585 107199623 -135464730 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr1 107200352 107200386 -135463967 + AT_rich Low_complexity Low_complexity 1 34 0 42 77 0 0 chr1 107200415 107200506 -135463847 + AT_rich Low_complexity Low_complexity 1 91 0 254 313 125 8 chr1 107201563 107201691 -135462662 - MIR SINE MIR -9 253 111 929 201 6 11 chr1 107201692 107201871 -135462482 + MER45A DNA AcHobo 1 178 0 1363 174 21 60 chr1 107202588 107202918 -135461435 + AluJo SINE Alu 12 330 0 235 268 51 87 chr1 107203023 107203161 -135461192 - L2 LINE L2 -1 3271 3139 324 0 0 0 chr1 107203215 107203251 -135461102 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2189 89 0 4 chr1 107203252 107203532 -135460821 - AluSx SINE Alu -33 279 1 1594 232 69 11 chr1 107204291 107204653 -135459700 - LTR40a LTR ERVL -81 438 56 2497 80 0 0 chr1 107204898 107205198 -135459155 + AluSq SINE Alu 1 300 -13 29 0 0 0 chr1 107205568 107205597 -135458756 + AT_rich Low_complexity Low_complexity 1 29 0 2723 246 72 22 chr1 107205935 107206711 -135457642 - L1ME3 LINE L1 -25 6137 5323 4239 201 31 7 chr1 107206713 107207982 -135456371 + L1M2 LINE L1 2611 3911 -2937 27440 35 1 2 chr1 107207983 107214150 -135450203 + L1PA3 LINE L1 1 6155 0 875 151 5 21 chr1 107214143 107214329 -135450024 + L1M2 LINE L1 3893 4075 -2773 * 601 96 0 11 chr1 107214330 107214424 -135449929 + L1MA4A LINE L1 5688 5780 -520 258 32 0 0 chr1 107214424 107214455 -135449898 + (TG)n Simple_repeat Simple_repeat 1 31 0 273 196 0 0 chr1 107214464 107214520 -135449833 + (TA)n Simple_repeat Simple_repeat 1 56 0 3019 125 10 13 chr1 107214520 107215041 -135449312 + L1MA4A LINE L1 5785 6303 0 368 330 113 9 chr1 107215556 107215786 -135448567 - MIR SINE MIR -3 259 6 2205 120 8 41 chr1 107217048 107217415 -135446938 - THE1A LTR MaLR 0 355 1 11876 94 4 1 chr1 107217415 107218991 -135445362 - THE1A-int LTR MaLR 0 1580 1 2494 93 8 8 chr1 107218991 107219346 -135445007 - THE1A LTR MaLR 0 355 1 774 189 131 5 chr1 107220330 107220521 -135443832 + MER20 DNA MER1_type 1 215 -4 188 57 0 57 chr1 107220555 107220590 -135443763 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2473 78 0 0 chr1 107220894 107221200 -135443153 - AluSq SINE Alu -7 306 1 219 305 12 24 chr1 107221286 107221368 -135442985 + G-rich Low_complexity Low_complexity 1 81 0 236 246 188 0 chr1 107222255 107222324 -135442029 - L2 LINE L2 -8 3264 3183 286 288 63 18 chr1 107222342 107222453 -135441900 - MIR SINE MIR -15 247 132 1487 181 31 31 chr1 107223678 107224027 -135440326 + MLT1A2 LTR MaLR 1 349 -25 2448 87 3 3 chr1 107225642 107225954 -135438399 + AluSp SINE Alu 2 313 0 307 399 60 27 chr1 107226785 107227118 -135437235 - L3 LINE CR1 -1200 377 34 184 231 92 31 chr1 107227878 107227943 -135436410 + MIR3 SINE MIR 132 200 -8 358 332 10 25 chr1 107228087 107228283 -135436070 + L2 LINE L2 2303 2495 -819 264 77 0 0 chr1 107228869 107228908 -135435445 + (GA)n Simple_repeat Simple_repeat 2 40 0 279 314 47 64 chr1 107229760 107229932 -135434421 + MIR SINE MIR 19 187 -75 331 302 184 11 chr1 107230789 107230968 -135433385 + MIR SINE MIR 6 215 -47 219 69 0 0 chr1 107231026 107231055 -135433298 + (CAT)n Simple_repeat Simple_repeat 3 31 0 185 255 176 10 chr1 107231244 107231346 -135433007 + MIR3 SINE MIR 10 128 -80 284 306 44 49 chr1 107231787 107231970 -135432383 + L2 LINE L2 2974 3155 -158 711 273 73 38 chr1 107232188 107232558 -135431795 + MER110 LTR ERV1 102 484 -7 258 32 0 0 chr1 107232695 107232726 -135431627 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 620 231 15 0 chr1 107233185 107233319 -135431034 - MER58B DNA MER1_type 0 341 206 201 270 60 20 chr1 107233393 107233493 -135430860 + MIR SINE MIR 144 247 -15 * 395 356 75 21 chr1 107233463 107233797 -135430556 - L2 LINE L2 -1391 1923 1572 1164 92 98 0 chr1 107234701 107234864 -135429489 + AluSp SINE Alu 134 312 -1 27 29 0 0 chr1 107236228 107236262 -135428091 + AT_rich Low_complexity Low_complexity 1 34 0 263 113 19 0 chr1 107238635 107238688 -135425665 + (TA)n Simple_repeat Simple_repeat 1 54 0 442 232 10 20 chr1 107239361 107239460 -135424893 - L2 LINE L2 0 3313 3216 233 307 157 68 chr1 107239527 107240100 -135424253 - L2 LINE L2 -2532 782 159 231 313 90 0 chr1 107240174 107240241 -135424112 + MIR SINE MIR 22 94 -168 2226 53 49 11 chr1 107240282 107240566 -135423787 - AluY SINE Alu -16 295 1 880 220 17 12 chr1 107240877 107241050 -135423303 - MER5A DNA MER1_type 0 189 16 408 111 0 0 chr1 107241366 107241429 -135422924 + (CA)n Simple_repeat Simple_repeat 2 64 0 206 307 247 18 chr1 107241718 107241884 -135422469 + MIR SINE MIR 59 262 0 1651 166 56 7 chr1 107243321 107243605 -135420748 + AluJb SINE Alu 1 298 -14 2158 121 7 7 chr1 107244085 107244391 -135419962 + AluSx SINE Alu 1 306 -6 279 248 132 31 chr1 107245182 107245245 -135419108 + L2 LINE L2 3172 3227 -86 506 81 54 0 chr1 107245245 107245319 -135419034 + MADE1 DNA Mariner 1 78 -2 279 248 132 31 chr1 107245319 107245384 -135418969 + L2 LINE L2 3227 3313 0 2113 114 4 0 chr1 107245418 107245723 -135418630 + AluSx SINE Alu 1 306 0 293 289 56 0 chr1 107246239 107246329 -135418024 - MIR SINE MIR -98 164 70 217 185 185 15 chr1 107247180 107247245 -135417108 - MIR SINE MIR -63 199 124 24 0 0 0 chr1 107247628 107247652 -135416701 + AT_rich Low_complexity Low_complexity 1 24 0 229 321 121 14 chr1 107248424 107248564 -135415789 + MIR3 SINE MIR 30 184 -24 296 239 28 42 chr1 107248742 107248813 -135415540 - MER5A DNA MER1_type -108 81 12 327 243 214 12 chr1 107248911 107249084 -135415269 + L1MC5 LINE L1 7717 7924 -37 486 271 23 15 chr1 107300221 107300354 -135363999 + MIR SINE MIR 113 246 -16 1973 130 20 10 chr1 107302073 107302209 -135362144 + AluSx SINE Alu 1 134 -178 2109 127 0 29 chr1 107302209 107302523 -135361830 + AluSq SINE Alu 1 305 -8 1973 130 20 10 chr1 107302523 107302685 -135361668 + AluSx SINE Alu 134 302 -10 2166 188 30 40 chr1 107303516 107303946 -135360407 + MSTB LTR MaLR 1 426 0 393 258 12 0 chr1 107304174 107304258 -135360095 - MER2 DNA MER2_type -150 89 6 339 268 0 134 chr1 107304755 107304897 -135359456 - L2 LINE L2 0 3313 3191 640 296 87 41 chr1 107304969 107305314 -135359039 + L3 LINE CR1 1214 1574 -3 228 309 132 0 chr1 107305599 107305667 -135358686 + MIR SINE MIR 65 141 -67 3461 200 66 4 chr1 107305992 107306261 -135358092 + L1MB7 LINE L1 5368 5619 -565 1933 129 4 7 chr1 107306261 107306539 -135357814 + AluSx SINE Alu 35 311 -1 3461 200 66 4 chr1 107306539 107307038 -135357315 + L1MB7 LINE L1 5619 6184 0 227 286 32 48 chr1 107307630 107307693 -135356660 - MIR SINE MIR -150 112 51 225 227 53 0 chr1 107311531 107311606 -135352747 + MLT1L LTR MaLR 495 573 -42 217 200 31 0 chr1 107312585 107312650 -135351703 + (TA)n Simple_repeat Simple_repeat 1 67 0 2315 62 38 0 chr1 107313466 107313754 -135350599 + AluSq SINE Alu 1 299 -14 511 104 13 0 chr1 107313804 107313881 -135350472 + L1PA10 LINE L1 6085 6162 -6 22 0 0 0 chr1 107314380 107314402 -135349951 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr1 107316223 107316277 -135348076 + AT_rich Low_complexity Low_complexity 1 54 0 199 338 29 0 chr1 107317179 107317247 -135347106 + MIR3 SINE MIR 139 208 0 1315 192 42 45 chr1 107318878 107319212 -135345141 + Charlie1a DNA MER1_type 1 333 -1122 1218 187 5 18 chr1 107319235 107319454 -135344899 - AluJo SINE Alu -20 292 77 4159 209 31 21 chr1 107319462 107320353 -135344000 + Charlie1a DNA MER1_type 340 1246 -1515 2350 97 3 0 chr1 107320353 107320664 -135343689 - AluSx SINE Alu 0 312 1 4159 209 31 21 chr1 107320664 107320877 -135343476 + Charlie1a DNA MER1_type 1246 1455 0 636 71 0 0 chr1 107321584 107321669 -135342684 + MER93b LTR ERV1 289 373 0 379 351 43 5 chr1 107322188 107322373 -135341980 + L3b LINE CR1 1294 1485 -98 414 0 0 0 chr1 107322406 107322452 -135341901 + (TG)n Simple_repeat Simple_repeat 2 47 0 277 246 14 0 chr1 107323080 107323149 -135341204 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 493 291 121 0 chr1 107323965 107324147 -135340206 - MIR SINE MIR -13 249 46 1142 212 61 53 chr1 107324386 107324797 -135339556 - MLT1C LTR MaLR 0 467 54 618 200 42 0 chr1 107326617 107326737 -135337616 + FRAM SINE Alu 16 140 -36 815 208 66 62 chr1 107328899 107329140 -135335213 - MIR SINE MIR -20 242 1 21 0 0 0 chr1 107330063 107330084 -135334269 + AT_rich Low_complexity Low_complexity 1 21 0 2169 107 68 33 chr1 107331290 107331717 -135332636 + MER1A DNA MER1_type 45 529 0 195 333 0 0 chr1 107331895 107331946 -135332407 - L2 LINE L2 -16 3297 3247 2218 112 0 10 chr1 107332367 107332670 -135331683 - AluSq SINE Alu -13 300 1 26 50 0 0 chr1 107332722 107332762 -135331591 + AT_rich Low_complexity Low_complexity 1 40 0 2115 118 126 50 chr1 107333340 107333738 -135330615 - MSTA LTR MaLR 0 428 1 2794 149 15 0 chr1 107333738 107334215 -135330138 - MER67C LTR ERV1 -1 709 226 364 179 32 53 chr1 107334222 107334317 -135330036 - MER67C LTR ERV1 -615 95 3 380 329 65 18 chr1 107334733 107334903 -135329450 - MER5B DNA MER1_type 0 178 1 272 192 64 13 chr1 107335969 107336047 -135328306 - MER103 DNA DNA -62 104 23 275 0 0 28 chr1 107336271 107336307 -135328046 + (TAA)n Simple_repeat Simple_repeat 2 36 0 215 213 262 0 chr1 107336938 107336999 -135327354 - MIR SINE MIR -108 154 78 446 313 33 0 chr1 107337124 107337274 -135327079 - MIR SINE MIR -2 260 106 1911 192 44 64 chr1 107337340 107337856 -135326497 - MLT1D LTR MaLR 0 555 1 206 231 0 0 chr1 107338140 107338179 -135326174 + CT-rich Low_complexity Low_complexity 2 40 0 29 47 0 0 chr1 107338227 107338270 -135326083 + AT_rich Low_complexity Low_complexity 1 43 0 497 239 11 78 chr1 107338446 107338626 -135325727 - L2 LINE L2 0 3313 3146 3239 275 198 9 chr1 107338765 107340303 -135324050 - L2 LINE L2 -216 3097 1273 362 303 46 18 chr1 107341584 107341693 -135322660 - L2 LINE L2 -12 3260 3149 1490 211 61 22 chr1 107341715 107342160 -135322193 + MLT1C LTR MaLR 6 467 0 225 0 0 0 chr1 107342983 107343008 -135321345 + (TG)n Simple_repeat Simple_repeat 2 26 0 2220 48 3 52 chr1 107343728 107344038 -135320315 + AluY SINE Alu 1 295 -16 554 40 26 0 chr1 107344038 107344114 -135320239 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 208 305 152 19 chr1 107344192 107344297 -135320056 - L2 LINE L2 0 3313 3195 2093 200 32 4 chr1 107344378 107344844 -135319509 - L1ME2 LINE L1 -9 6155 5677 2548 229 112 16 chr1 107344846 107345818 -135318535 - L1ME2 LINE L1 -886 5260 4196 1333 199 9 36 chr1 107345981 107346009 -135318344 - MER33 DNA MER1_type -2262 323 296 1741 192 10 0 chr1 107346009 107346306 -135318047 + AluJo SINE Alu 1 300 -12 1333 199 9 36 chr1 107346306 107346609 -135317744 - MER33 DNA MER1_type -2289 296 1 677 243 26 103 chr1 107346788 107347060 -135317293 + MIR SINE MIR 11 261 -1 336 48 0 0 chr1 107347073 107347115 -135317238 + (TG)n Simple_repeat Simple_repeat 2 43 0 2887 102 20 16 chr1 107348360 107348801 -135315552 - MLT2A1 LTR ERVL -1 443 1 1837 132 78 0 chr1 107349905 107350186 -135314167 - AluSx SINE Alu -9 303 1 363 44 0 0 chr1 107350315 107350360 -135313993 + (TG)n Simple_repeat Simple_repeat 2 46 0 1332 73 0 11 chr1 107350495 107350674 -135313679 - L1PA6 LINE L1 -7 6147 5971 763 288 18 14 chr1 107350966 107351185 -135313168 - MIR SINE MIR -41 221 2 234 344 46 30 chr1 107351229 107351360 -135312993 + L2 LINE L2 3138 3270 -2 212 368 87 35 chr1 107351448 107351679 -135312674 - L3 LINE CR1 -1119 458 216 1962 176 19 3 chr1 107352471 107352830 -135311523 - MLT1A1 LTR MaLR 0 365 1 449 338 25 0 chr1 107353371 107353531 -135310822 + MIR3 SINE MIR 39 202 -6 428 294 8 0 chr1 107353874 107354000 -135310353 + MIR SINE MIR 71 197 -65 511 242 87 0 chr1 107354124 107354273 -135310080 + MER93b LTR ERV1 1 162 -211 206 163 150 75 chr1 107354646 107354726 -135309627 - L2 LINE L2 -1868 1446 1361 189 147 0 0 chr1 107356053 107356087 -135308266 + (CA)n Simple_repeat Simple_repeat 2 35 0 2277 113 3 0 chr1 107356414 107356724 -135307629 - AluSq SINE Alu -2 311 1 321 225 93 70 chr1 107357261 107357390 -135306963 + MIR SINE MIR 112 243 -19 236 310 120 13 chr1 107357833 107357998 -135306355 - MIR SINE MIR -7 201 13 4804 80 34 10 chr1 107358490 107359202 -135305151 - L1PA8A LINE L1 0 6131 5403 2290 135 8 24 chr1 107359231 107359601 -135304752 - THE1B LTR MaLR 0 364 1 1822 187 35 28 chr1 107360487 107361041 -135303312 + MLT2A2 LTR ERVL 1 554 0 2045 118 10 10 chr1 107362101 107362390 -135301963 - AluSx SINE Alu -10 302 14 667 206 14 27 chr1 107362756 107362902 -135301451 - LTR16C LTR ERVL 0 491 348 21 0 0 0 chr1 107363979 107364000 -135300353 + AT_rich Low_complexity Low_complexity 1 21 0 381 263 97 20 chr1 107364336 107364503 -135299850 + MIR SINE MIR 22 205 -40 198 248 330 9 chr1 107365748 107365857 -135298496 + MIR SINE MIR 119 262 0 2343 261 35 38 chr1 107366078 107366783 -135297570 - L2 LINE L2 -483 2831 2129 2819 161 139 41 chr1 107366944 107367585 -135296768 + MER39 LTR ERV1 4 707 0 2709 207 65 83 chr1 107367644 107368561 -135295792 + L1ME1 LINE L1 5254 6154 -12 2184 95 0 32 chr1 107368562 107368877 -135295476 + AluSx SINE Alu 1 305 -7 21 57 0 0 chr1 107368895 107368930 -135295423 + AT_rich Low_complexity Low_complexity 1 35 0 400 364 57 18 chr1 107370077 107370305 -135294048 + MIR SINE MIR 23 259 -3 391 265 94 18 chr1 107370352 107370522 -135293831 - L2 LINE L2 -1020 2294 2112 595 225 145 98 chr1 107372128 107372555 -135291798 - MLT1H LTR MaLR 0 549 103 360 303 79 7 chr1 107372820 107372972 -135291381 + MER112 DNA MER1_type 97 259 -1 265 237 269 0 chr1 107372973 107373066 -135291287 - MIR3 SINE MIR -54 154 37 455 175 0 50 chr1 107373802 107373922 -135290431 - MER33 DNA MER1_type -1 362 249 759 196 30 6 chr1 107373922 107374090 -135290263 - L1MD3 LINE L1 -23 7972 7801 1083 196 15 0 chr1 107374102 107374306 -135290047 - MER33 DNA MER1_type -117 207 1 516 211 59 78 chr1 107374408 107374678 -135289675 + MIR SINE MIR 3 256 -6 371 291 136 0 chr1 107374787 107374897 -135289456 - L2 LINE L2 -10 3303 3179 28 0 0 0 chr1 107374988 107375016 -135289337 + AT_rich Low_complexity Low_complexity 1 28 0 2228 108 0 0 chr1 107375064 107375361 -135288992 + AluSc SINE Alu 1 297 -12 1093 122 2 9 chr1 107375921 107376168 -135288185 + (TTCC)n Simple_repeat Simple_repeat 2 423 0 543 107 0 0 chr1 107376204 107376288 -135288065 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 576 279 17 77 chr1 107376454 107376687 -135287666 + MIR SINE MIR 37 255 -7 669 283 43 17 chr1 107377718 107377951 -135286402 - L2 LINE L2 -868 2446 2208 512 297 50 67 chr1 107378991 107379230 -135285123 + MIR SINE MIR 12 246 -16 834 278 78 0 chr1 107381181 107381411 -135282942 - MIR SINE MIR -6 256 9 2168 115 0 6 chr1 107382908 107383220 -135281133 - AluSg SINE Alu 0 310 1 224 276 11 23 chr1 107384545 107384632 -135279721 + CT-rich Low_complexity Low_complexity 5 90 0 229 299 39 0 chr1 107384803 107384880 -135279473 - Charlie4 DNA MER1_type 0 1961 1882 617 289 93 5 chr1 107385078 107385272 -135279081 - MIR SINE MIR -3 259 49 1010 41 0 0 chr1 107385527 107385649 -135278704 + AluY SINE Alu 179 300 -11 1931 163 17 57 chr1 107388377 107388781 -135275572 - MLT1B LTR MaLR -2 388 1 273 57 0 0 chr1 107389904 107389939 -135274414 + (TA)n Simple_repeat Simple_repeat 2 36 0 399 296 179 15 chr1 107389993 107390189 -135274164 + MIR SINE MIR 8 235 -27 229 313 8 47 chr1 107390232 107390360 -135273993 + CT-rich Low_complexity Low_complexity 3 125 0 3708 190 48 56 chr1 107391273 107392106 -135272247 + L1MCa LINE L1 1 826 -5600 2415 200 58 18 chr1 107392103 107392801 -135271552 + L1MA6 LINE L1 2696 3428 -3420 * 3863 176 11 22 chr1 107392835 107394216 -135270137 + L1MA6 LINE L1 5320 6686 -316 286 95 0 0 chr1 107394267 107394309 -135270044 - L1MCa LINE L1 -5052 1374 1333 1165 152 24 100 chr1 107394481 107394771 -135269582 - L1MA6 LINE L1 -316 5984 5717 4931 210 71 42 chr1 107394784 107397323 -135267030 + L1MCa LINE L1 1368 3982 -2444 * 15083 159 33 19 chr1 107397320 107397743 -135266610 + L1M1 LINE L1 12 428 -7137 2060 99 24 3 chr1 107397743 107398036 -135266317 - AluSx SINE Alu -13 299 1 15083 159 33 19 chr1 107398036 107400252 -135264101 + L1M1 LINE L1 428 2688 -4877 14611 147 11 23 chr1 107400225 107402829 -135261524 + L1P LINE L1 3804 6375 -1190 * 4250 143 41 21 chr1 107402826 107403373 -135260980 - L1MA6 LINE L1 -1153 4993 4458 * 1090 30 0 0 chr1 107403373 107403505 -135260848 - L1PA5 LINE L1 0 6154 6023 4250 143 41 21 chr1 107403505 107403541 -135260812 - L1MA6 LINE L1 -1688 4458 4424 189 0 0 0 chr1 107403541 107403562 -135260791 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 4250 143 41 21 chr1 107403562 107403786 -135260567 - L1MA6 LINE L1 -1722 4424 4169 * 6025 146 23 24 chr1 107403783 107404029 -135260324 + L1MA5A LINE L1 5036 5281 -1016 1971 133 10 10 chr1 107404029 107404323 -135260030 - AluSx SINE Alu -18 294 1 6025 146 23 24 chr1 107404323 107405328 -135259025 + L1MA5A LINE L1 5281 6297 0 4570 140 29 36 chr1 107405360 107406223 -135258130 + L1MC1 LINE L1 5461 6317 -16 25 31 0 0 chr1 107406233 107406265 -135258088 + AT_rich Low_complexity Low_complexity 1 32 0 568 256 6 83 chr1 107407008 107407188 -135257165 + MIR SINE MIR 4 169 -93 687 226 6 24 chr1 107408698 107408866 -135255487 - MIR SINE MIR 0 262 98 414 0 0 0 chr1 107409771 107409817 -135254536 + (CA)n Simple_repeat Simple_repeat 2 47 0 366 287 132 0 chr1 107410038 107410174 -135254179 - MIR SINE MIR -56 206 53 2096 86 3 65 chr1 107410479 107410804 -135253549 + AluSc SINE Alu 3 307 -2 231 320 33 25 chr1 107410969 107411091 -135253262 - L2 LINE L2 0 3313 3191 821 217 51 36 chr1 107411319 107411656 -135252697 + MER4C LTR ERV1 169 465 0 230 317 99 20 chr1 107411668 107411769 -135252584 + L2 LINE L2 2245 2353 -961 12100 231 23 25 chr1 107411978 107418962 -135245391 - L1PA15 LINE L1 0 7603 110 1184 254 94 18 chr1 107419032 107419487 -135244866 - MER110A LTR ERV1 0 468 9 619 179 0 9 chr1 107419491 107419597 -135244756 + MLT1C LTR MaLR 358 462 -5 1821 216 44 26 chr1 107420295 107420749 -135243604 - MLT1C LTR MaLR -5 462 1 342 0 0 0 chr1 107421954 107421992 -135242361 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr1 107422013 107422034 -135242319 + AT_rich Low_complexity Low_complexity 1 21 0 506 286 9 9 chr1 107422946 107423058 -135241295 + L2 LINE L2 3150 3261 -11 265 241 0 0 chr1 107423297 107423351 -135241002 - L2 LINE L2 -8 3264 3211 509 285 21 0 chr1 107423789 107423933 -135240420 - L3b LINE CR1 -196 1387 1241 25 0 0 0 chr1 107424224 107424249 -135240104 + AT_rich Low_complexity Low_complexity 1 25 0 2399 164 38 58 chr1 107425632 107426179 -135238174 + L1MB7 LINE L1 5649 6184 0 23 33 0 0 chr1 107426182 107426212 -135238141 + AT_rich Low_complexity Low_complexity 1 30 0 567 308 89 19 chr1 107426524 107426738 -135237615 + MIR SINE MIR 23 251 -11 25 65 0 0 chr1 107426740 107426786 -135237567 + AT_rich Low_complexity Low_complexity 1 46 0 490 320 154 4 chr1 107428266 107428538 -135235815 + L2 LINE L2 2554 2866 -448 253 269 15 22 chr1 107428902 107428918 -135235435 - L1MA10 LINE L1 0 6334 6319 1901 220 71 21 chr1 107428918 107429436 -135234917 - L1ME1 LINE L1 -5 6161 5618 1695 202 35 38 chr1 107429443 107429683 -135234670 - MLT1A2 LTR MaLR 0 374 135 2428 112 22 0 chr1 107429683 107430050 -135234303 + THE1C LTR MaLR 1 375 0 10114 122 38 1 chr1 107430050 107431572 -135232781 + THE1C-int LTR MaLR 1 1579 -1 2816 91 8 0 chr1 107431573 107431945 -135232408 + THE1C LTR MaLR 1 375 0 1695 202 35 38 chr1 107431945 107432073 -135232280 - MLT1A2 LTR MaLR -237 137 4 334 195 81 81 chr1 107432078 107432349 -135232004 - L1ME1 LINE L1 -553 5613 5159 24 0 0 0 chr1 107432582 107432606 -135231747 + AT_rich Low_complexity Low_complexity 1 24 0 185 329 57 0 chr1 107432640 107432710 -135231643 + L2 LINE L2 3177 3250 -22 400 164 15 0 chr1 107432722 107432789 -135231564 - L2 LINE L2 -4 3309 3242 193 343 41 0 chr1 107432839 107432912 -135231441 + L2 LINE L2 3196 3271 -1 443 316 26 0 chr1 107434639 107434794 -135229559 + MIR SINE MIR 104 262 0 226 227 0 61 chr1 107434794 107434860 -135229493 + (TTA)n Simple_repeat Simple_repeat 3 64 0 811 234 43 86 chr1 107435196 107435546 -135228807 + MER46C DNA MER2_type 1 335 -3 1554 157 37 202 chr1 107435658 107436167 -135228186 + MER61D LTR ERV1 1 501 0 234 0 0 0 chr1 107436256 107436282 -135228071 + (T)n Simple_repeat Simple_repeat 1 26 0 237 301 75 11 chr1 107437362 107437455 -135226898 - L2 LINE L2 -12 3301 3203 348 234 124 53 chr1 107437643 107437762 -135226591 - MER102a DNA MER1_type -1107 310 201 633 224 59 36 chr1 107437762 107437981 -135226372 - MER58A DNA MER1_type 0 224 1 348 234 124 53 chr1 107437981 107438070 -135226283 - MER102a DNA MER1_type -1216 201 87 4129 197 43 18 chr1 107439879 107441142 -135223211 + L1MB8 LINE L1 4887 6177 -1 232 291 0 0 chr1 107441165 107441220 -135223133 - L2 LINE L2 -32 3240 3186 595 266 131 9 chr1 107441624 107441838 -135222515 - MIR SINE MIR -11 251 12 200 293 0 40 chr1 107441867 107441942 -135222411 + L2 LINE L2 3201 3272 0 25 0 0 0 chr1 107442156 107442181 -135222172 + AT_rich Low_complexity Low_complexity 1 25 0 262 337 11 0 chr1 107442194 107442283 -135222070 - MIR SINE MIR -6 256 167 854 277 85 0 chr1 107442304 107442539 -135221814 + MIR SINE MIR 7 261 -1 430 256 50 16 chr1 107442562 107442683 -135221670 - MIR SINE MIR -123 139 15 241 270 48 0 chr1 107442830 107442893 -135221460 + L2 LINE L2 3237 3302 -11 249 379 0 23 chr1 107442913 107443045 -135221308 + L2 LINE L2 2531 2659 -655 1939 188 0 6 chr1 107443437 107443773 -135220580 - MLT1A1 LTR MaLR 0 365 32 381 216 0 0 chr1 107443765 107443839 -135220514 - MLT1E2 LTR MaLR -534 92 19 * 739 228 47 38 chr1 107443923 107444134 -135220219 + MLT1K LTR MaLR 374 586 -2 213 231 0 0 chr1 107446293 107446345 -135218008 + (TA)n Simple_repeat Simple_repeat 2 53 0 2252 104 0 0 chr1 107446429 107446718 -135217635 - AluSg SINE Alu -19 291 3 334 227 103 21 chr1 107446945 107447042 -135217311 - MIR SINE MIR -92 170 66 353 313 60 0 chr1 107447169 107447303 -135217050 + MIR SINE MIR 51 192 -70 274 167 22 56 chr1 107447612 107447702 -135216651 - LTR37A LTR ERV1 -33 393 307 318 230 133 52 chr1 107447846 107447981 -135216372 - MIR SINE MIR -65 197 52 551 298 197 8 chr1 107448587 107448943 -135215410 + L2 LINE L2 2890 3312 -1 369 268 45 27 chr1 107449168 107449280 -135215073 - MIR SINE MIR -147 115 2 343 250 47 88 chr1 107449496 107449544 -135214809 + L2 LINE L2 3172 3220 -93 1681 205 5 60 chr1 107449544 107449930 -135214423 + MLT1A1 LTR MaLR 1 365 0 343 250 47 88 chr1 107449930 107450029 -135214324 + L2 LINE L2 3220 3313 0 348 318 23 62 chr1 107450103 107450224 -135214129 + MIR SINE MIR 79 192 -70 1263 247 34 53 chr1 107450224 107450697 -135213656 - MLT2C2 LTR ERVL 0 464 1 348 318 23 62 chr1 107450697 107450751 -135213602 + MIR SINE MIR 192 247 -15 22 70 0 0 chr1 107452073 107452116 -135212237 + AT_rich Low_complexity Low_complexity 1 43 0 234 91 0 0 chr1 107453954 107453987 -135210366 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 27 29 0 0 chr1 107455215 107455249 -135209104 + AT_rich Low_complexity Low_complexity 1 34 0 339 130 0 0 chr1 107455768 107455822 -135208531 + (T)n Simple_repeat Simple_repeat 1 54 0 202 352 19 19 chr1 107458370 107458478 -135205875 + L2 LINE L2 2951 3058 -214 215 347 0 13 chr1 107458511 107458586 -135205767 + CT-rich Low_complexity Low_complexity 6 79 0 234 309 266 5 chr1 107458627 107458834 -135205519 - MIR SINE MIR 0 262 2 21 0 0 0 chr1 107459008 107459029 -135205324 + AT_rich Low_complexity Low_complexity 1 21 0 2144 75 7 0 chr1 107460135 107460439 -135203914 - AluSg SINE Alu 0 306 1 21 0 0 0 chr1 107460442 107460463 -135203890 + AT_rich Low_complexity Low_complexity 1 21 0 227 326 76 15 chr1 107460554 107460686 -135203667 - L3 LINE CR1 -758 819 680 353 195 0 39 chr1 107460694 107460771 -135203582 - Tigger5 DNA MER2_type -2237 86 13 232 207 17 52 chr1 107460832 107460890 -135203463 - Tigger5 DNA MER2_type -2267 56 1 214 327 191 0 chr1 107461098 107461260 -135203093 - L3 LINE CR1 -1192 385 193 213 65 0 0 chr1 107463906 107463937 -135200416 + (T)n Simple_repeat Simple_repeat 1 31 0 670 268 119 4 chr1 107464364 107464599 -135199754 + MIR SINE MIR 1 262 0 468 325 35 75 chr1 107464638 107464893 -135199460 + L2 LINE L2 3016 3260 -12 255 307 57 11 chr1 107464942 107465030 -135199323 + L2 LINE L2 3179 3270 -2 677 217 19 13 chr1 107465868 107466025 -135198328 + L2 LINE L2 2598 2755 -559 * 1017 273 122 23 chr1 107466011 107466396 -135197957 + L2 LINE L2 2890 3312 -1 522 303 66 38 chr1 107467123 107467410 -135196943 + L2 LINE L2 3010 3304 -9 544 248 203 30 chr1 107467567 107467769 -135196584 - MIR SINE MIR -2 260 24 290 353 108 34 chr1 107468351 107468904 -135195449 - L2 LINE L2 -569 2745 2152 195 129 0 0 chr1 107469709 107469740 -135194613 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 235 216 20 0 chr1 107470572 107470623 -135193730 + LTR30 LTR ERV1 1 52 -670 726 140 61 19 chr1 107470635 107470771 -135193582 + LTR12 LTR ERV1 100 233 -481 325 274 17 0 chr1 107470859 107470976 -135193377 + LTR30 LTR ERV1 524 642 -80 660 130 0 0 chr1 107470979 107471079 -135193274 + LTR12 LTR ERV1 615 714 0 1679 205 26 0 chr1 107471694 107472035 -135192318 + L1MD2 LINE L1 6000 6349 -10 207 0 0 0 chr1 107475558 107475581 -135188772 + (A)n Simple_repeat Simple_repeat 1 23 0 282 56 0 0 chr1 107476485 107476521 -135187832 + (TA)n Simple_repeat Simple_repeat 2 37 0 347 0 23 0 chr1 107476542 107476585 -135187768 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr1 107476601 107476621 -135187732 + (TG)n Simple_repeat Simple_repeat 2 21 0 248 220 34 17 chr1 107476739 107476798 -135187555 - L2 LINE L2 -3 3310 3251 180 273 0 0 chr1 107477164 107477208 -135187145 + MIR SINE MIR 170 213 -49 521 330 52 0 chr1 107477744 107477935 -135186418 + MIR SINE MIR 10 210 -52 258 32 0 0 chr1 107478297 107478328 -135186025 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 181 288 58 73 chr1 107478630 107478835 -135185518 - L2 LINE L2 -197 3075 2874 224 288 14 14 chr1 107479347 107479420 -135184933 + GA-rich Low_complexity Low_complexity 4 76 0 247 250 16 0 chr1 107480233 107480297 -135184056 + L3 LINE CR1 1482 1546 -31 1653 206 12 46 chr1 107480348 107480795 -135183558 + MLT2B2 LTR ERVL 1 442 -112 606 248 15 0 chr1 107480799 107480936 -135183417 + Ricksha DNA DNA 735 873 -1173 234 128 106 0 chr1 107481054 107481101 -135183252 + MLT2B2 LTR ERVL 469 520 0 227 281 47 82 chr1 107481639 107481810 -135182543 - MIR SINE MIR -3 259 95 586 281 27 11 chr1 107482269 107482454 -135181899 + MIR3 SINE MIR 3 190 -18 349 226 21 32 chr1 107483100 107483193 -135181160 + MIR SINE MIR 76 167 -95 26 50 0 0 chr1 107483935 107483975 -135180378 + AT_rich Low_complexity Low_complexity 1 40 0 260 399 13 51 chr1 107484269 107484427 -135179926 - L2 LINE L2 0 3272 3121 733 313 86 48 chr1 107484427 107484975 -135179378 + L2 LINE L2 1459 2034 -1280 784 152 8 23 chr1 107484975 107485107 -135179246 + FLAM_C SINE Alu 1 130 -3 733 313 86 48 chr1 107485107 107485166 -135179187 + L2 LINE L2 2034 2089 -1225 997 323 126 17 chr1 107485173 107485876 -135178477 + L2 LINE L2 2533 3312 -1 483 290 81 26 chr1 107485904 107486112 -135178241 + MIR SINE MIR 25 246 -16 21 36 0 0 chr1 107486231 107486259 -135178094 + AT_rich Low_complexity Low_complexity 1 28 0 303 204 23 11 chr1 107487834 107487922 -135176431 - HsTC2 DNA Tc2 -175 1723 1635 261 221 58 12 chr1 107487930 107488016 -135176337 - MER104 DNA Tc2 -88 92 3 268 164 14 68 chr1 107489565 107489638 -135174715 + L1ME4a LINE L1 5852 5920 -201 285 203 14 0 chr1 107489643 107489712 -135174641 + L1ME4a LINE L1 6049 6118 -3 1863 162 3 0 chr1 107490485 107490781 -135173572 + AluJb SINE Alu 7 303 -9 1977 113 13 50 chr1 107490958 107491259 -135173094 + AluSx SINE Alu 3 292 -20 408 320 103 58 chr1 107491689 107492174 -135172179 - L1 LINE L1 -2384 3762 3256 290 319 95 63 chr1 107495328 107495613 -135168740 + L2 LINE L2 3005 3298 -15 186 326 185 33 chr1 107496055 107496239 -135168114 - L2 LINE L2 -185 3087 2876 1464 215 103 6 chr1 107499658 107499988 -135164365 + MLT1A1 LTR MaLR 1 362 -3 204 329 91 41 chr1 107500466 107500685 -135163668 + L2 LINE L2 2824 3053 -219 245 261 52 98 chr1 107501011 107501164 -135163189 - L2 LINE L2 -1 3312 3167 227 192 68 82 chr1 107502020 107502093 -135162260 + L2 LINE L2 3201 3272 0 2147 104 14 7 chr1 107503155 107503452 -135160901 - AluSx SINE Alu -11 301 3 816 156 12 6 chr1 107504751 107504918 -135159435 + CT-rich Low_complexity Low_complexity 1 168 0 225 83 0 0 chr1 107504918 107504954 -135159399 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 308 301 89 0 chr1 107506967 107507113 -135157240 - L1ME LINE L1 -624 5497 5339 22 0 0 0 chr1 107507689 107507711 -135156642 + AT_rich Low_complexity Low_complexity 1 22 0 2269 113 0 3 chr1 107507714 107508016 -135156337 + AluSx SINE Alu 1 301 -11 252 0 0 0 chr1 107508016 107508044 -135156309 + (TA)n Simple_repeat Simple_repeat 2 29 0 476 348 27 11 chr1 107508336 107508520 -135155833 + MIR SINE MIR 10 196 -66 191 271 17 34 chr1 107508571 107508630 -135155723 - L2 LINE L2 -218 3054 2997 28 0 0 0 chr1 107508952 107508980 -135155373 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 107509503 107509525 -135154828 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 107509617 107509640 -135154713 + AT_rich Low_complexity Low_complexity 1 23 0 303 329 86 14 chr1 107509947 107510087 -135154266 - MIR3 SINE MIR -30 178 29 416 268 49 8 chr1 107510248 107510371 -135153982 - MIR SINE MIR -19 243 116 24 0 0 0 chr1 107513324 107513348 -135151005 + AT_rich Low_complexity Low_complexity 1 24 0 4634 233 14 21 chr1 107514501 107515743 -135148610 - L1P LINE L1 -3085 3061 1829 767 264 48 51 chr1 107515743 107516096 -135148257 + MLT1E2 LTR MaLR 275 626 0 218 273 0 0 chr1 107517799 107517843 -135146510 + L2 LINE L2 3215 3258 -14 976 280 104 51 chr1 107517969 107518440 -135145913 + L2 LINE L2 2818 3313 0 180 200 0 0 chr1 107519096 107519141 -135145212 + A-rich Low_complexity Low_complexity 3 47 0 289 268 145 13 chr1 107519563 107519798 -135144555 - L1ME4a LINE L1 -3 6118 5853 23 68 0 0 chr1 107519807 107519851 -135144502 + AT_rich Low_complexity Low_complexity 1 44 0 224 191 29 0 chr1 107522715 107522783 -135141570 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 465 219 81 16 chr1 107522931 107523054 -135141299 + MER94 DNA DNA 2 132 -2 188 65 0 32 chr1 107523158 107523189 -135141164 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1983 106 11 11 chr1 107523709 107524030 -135140323 + AluSc SINE Alu 1 321 0 203 111 0 22 chr1 107524870 107524915 -135139438 + (TG)n Simple_repeat Simple_repeat 2 45 0 2164 124 0 3 chr1 107525899 107526197 -135138156 - AluSx SINE Alu -15 297 1 380 334 111 64 chr1 107526197 107526271 -135138082 + L2 LINE L2 2548 2617 -655 723 273 11 0 chr1 107526271 107526447 -135137906 - MER45A DNA AcHobo 0 178 1 380 334 111 64 chr1 107526447 107527053 -135137300 + L2 LINE L2 2617 3258 -14 189 107 0 0 chr1 107527054 107527082 -135137271 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 243 305 0 67 chr1 107527910 107528015 -135136338 - MIR SINE MIR -59 203 106 2409 89 0 3 chr1 107528036 107528349 -135136004 + AluSq SINE Alu 1 312 -1 411 83 0 0 chr1 107529079 107529139 -135135214 + (CA)n Simple_repeat Simple_repeat 1 60 0 219 228 57 19 chr1 107529143 107529301 -135135052 + (TA)n Simple_repeat Simple_repeat 2 165 0 22 70 0 0 chr1 107529343 107529386 -135134967 + AT_rich Low_complexity Low_complexity 1 43 0 5981 88 13 28 chr1 107530061 107531132 -135133221 + L1PB1 LINE L1 4899 5957 -194 1075 178 202 0 chr1 107531132 107531379 -135132974 + AluSx SINE Alu 1 297 -5 5981 88 13 28 chr1 107531379 107531571 -135132782 + L1PB1 LINE L1 5957 6150 -1 580 226 152 6 chr1 107532542 107532706 -135131647 - MER5A DNA MER1_type -1 188 1 7749 19 1 0 chr1 107532954 107533930 -135130423 + L1PA3 LINE L1 5176 6152 -3 2346 256 98 36 chr1 107535062 107535126 -135129227 + L1ME LINE L1 2 61 -6019 360 0 0 0 chr1 107535126 107535166 -135129187 + (CA)n Simple_repeat Simple_repeat 2 41 0 2346 256 98 36 chr1 107535166 107536208 -135128145 + L1ME LINE L1 61 1163 -4917 218 236 0 14 chr1 107536543 107536615 -135127738 + CT-rich Low_complexity Low_complexity 3 73 0 6429 24 0 0 chr1 107538213 107538957 -135125396 - L1PA3 LINE L1 -3 6152 5409 8483 31 1 1 chr1 107538957 107539989 -135124364 + L1P LINE L1 4328 5359 -787 1122 216 28 111 chr1 107540101 107540499 -135123854 - MLT1A1 LTR MaLR 0 365 1 4973 181 3 0 chr1 107540606 107541507 -135122846 + L1PA13 LINE L1 3681 4584 -1562 1074 76 0 0 chr1 107541514 107541646 -135122707 - AluY SINE Alu -179 132 1 5046 131 37 18 chr1 107541648 107543210 -135121143 + L1PA13 LINE L1 4572 6157 -6 21 0 0 0 chr1 107543572 107543593 -135120760 + AT_rich Low_complexity Low_complexity 1 21 0 235 344 87 10 chr1 107544966 107545161 -135119192 + MIR SINE MIR 49 258 -4 2172 127 0 3 chr1 107545487 107545786 -135118567 - AluSx SINE Alu -13 299 2 477 0 0 0 chr1 107546163 107546216 -135118137 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 460 98 0 0 chr1 107546219 107546280 -135118073 - AluSp/q SINE Alu -33 280 220 203 237 53 53 chr1 107547220 107547296 -135117057 + L2 LINE L2 577 652 -2662 2284 98 3 0 chr1 107547330 107547627 -135116726 - AluSg SINE Alu -12 298 1 188 189 27 0 chr1 107549758 107549795 -135114558 + MIR SINE MIR 108 145 -63 262 220 22 44 chr1 107549795 107549886 -135114467 + L1MC4 LINE L1 6615 6703 -1339 230 266 0 43 chr1 107549894 107549988 -135114365 - L1MC4 LINE L1 -1339 6703 6614 * 278 228 22 43 chr1 107549980 107550072 -135114281 + L1MC4 LINE L1 6614 6703 -1339 232 215 37 65 chr1 107550004 107550111 -135114242 - L1MC4 LINE L1 -1339 6703 6600 * 217 204 23 0 chr1 107550111 107550155 -135114198 + (TA)n Simple_repeat Simple_repeat 1 45 0 351 308 59 55 chr1 107550471 107550708 -135113645 + L1ME2 LINE L1 3928 4165 -1981 246 271 73 10 chr1 107551476 107551572 -135112781 + L1ME2 LINE L1 4746 4847 -1299 2876 140 39 2 chr1 107551801 107552286 -135112067 + L1PA15 LINE L1 5662 6164 -1 23 0 0 0 chr1 107552290 107552313 -135112040 + AT_rich Low_complexity Low_complexity 1 23 0 523 254 72 48 chr1 107553121 107553330 -135111023 - HAL1 LINE L1 -728 1779 1566 489 276 231 0 chr1 107554272 107554497 -135109856 - L1ME2 LINE L1 -36 6128 5852 1067 207 106 0 chr1 107554511 107554738 -135109615 - L1ME2 LINE L1 -486 5678 5428 261 0 0 0 chr1 107556342 107556371 -135107982 + (TG)n Simple_repeat Simple_repeat 2 30 0 304 339 64 50 chr1 107556723 107557021 -135107332 - L2 LINE L2 -1264 2050 1749 1862 228 73 65 chr1 107557463 107557746 -135106607 + L1ME2 LINE L1 5254 5533 -637 2126 113 3 3 chr1 107557746 107558046 -135106307 + AluSg SINE Alu 1 300 -10 1862 228 73 65 chr1 107558046 107558705 -135105648 + L1ME2 LINE L1 5533 6170 0 2152 114 16 0 chr1 107558871 107559179 -135105174 + AluSq SINE Alu 1 313 0 207 139 0 0 chr1 107559394 107559430 -135104923 + (CA)n Simple_repeat Simple_repeat 1 36 0 437 226 10 0 chr1 107561455 107561557 -135102796 + L1MC3 LINE L1 7682 7784 -1 708 280 36 56 chr1 107562997 107563086 -135101267 - MIR SINE MIR -11 251 162 2252 103 63 26 chr1 107563086 107563437 -135100916 + THE1B LTR MaLR 1 364 0 708 280 36 56 chr1 107563437 107563597 -135100756 - MIR SINE MIR -100 162 7 215 283 0 50 chr1 107564031 107564086 -135100267 + CT-rich Low_complexity Low_complexity 1 50 -44 2648 87 5 22 chr1 107564086 107564456 -135099897 + THE1B LTR MaLR 1 364 0 215 283 0 50 chr1 107564456 107564499 -135099854 + CT-rich Low_complexity Low_complexity 50 94 0 231 229 0 28 chr1 107565290 107565321 -135099032 + (TA)n Simple_repeat Simple_repeat 1 31 -75 195 42 0 0 chr1 107565321 107565345 -135099008 + (GA)n Simple_repeat Simple_repeat 2 25 0 231 229 0 28 chr1 107565345 107565422 -135098931 + (TA)n Simple_repeat Simple_repeat 31 106 0 235 117 17 50 chr1 107565424 107565484 -135098869 + L1MC4 LINE L1 6655 6712 -1330 28 48 0 0 chr1 107565523 107565565 -135098788 + AT_rich Low_complexity Low_complexity 1 42 0 367 342 111 68 chr1 107565588 107566030 -135098323 - L2 LINE L2 -1 3271 2811 464 289 0 15 chr1 107566372 107566507 -135097846 + LTR16C LTR ERVL 359 491 0 778 145 15 8 chr1 107567255 107567386 -135096967 - FRAM SINE Alu -25 151 20 21 0 0 0 chr1 107568354 107568375 -135095978 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 107569362 107569385 -135094968 + (T)n Simple_repeat Simple_repeat 1 23 0 308 259 129 26 chr1 107569560 107569676 -135094677 - MIR SINE MIR -17 245 118 302 420 64 20 chr1 107569762 107570057 -135094296 + L2 LINE L2 2879 3186 -86 560 297 79 0 chr1 107570123 107570288 -135094065 + MIR SINE MIR 83 260 -2 267 335 120 70 chr1 107573541 107573825 -135090528 + L2 LINE L2 2680 2977 -337 2456 129 61 19 chr1 107573857 107574268 -135090085 + MSTC LTR MaLR 1 428 0 191 284 63 32 chr1 107574288 107574383 -135089970 + L2 LINE L2 3191 3288 -25 313 353 88 20 chr1 107574421 107574775 -135089578 - L3 LINE CR1 -542 1035 658 317 291 214 21 chr1 107575420 107575709 -135088644 + MARNA DNA Mariner 23 367 -219 354 23 0 0 chr1 107577347 107577390 -135086963 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr1 107577499 107577520 -135086833 + AT_rich Low_complexity Low_complexity 1 21 0 4436 185 35 23 chr1 107578321 107578937 -135085416 - L1ME3 LINE L1 -4 6277 5670 716 52 10 0 chr1 107578937 107579034 -135085319 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 4436 185 35 23 chr1 107579034 107579409 -135084944 - L1ME3 LINE L1 -611 5670 5301 1453 198 12 15 chr1 107579502 107579840 -135084513 - L1 LINE L1 -823 5323 4987 4433 203 26 5 chr1 107579851 107580820 -135083533 + L1 LINE L1 3639 4627 -1519 2130 117 3 25 chr1 107581004 107581320 -135083033 + AluSc SINE Alu 1 309 0 627 139 56 0 chr1 107581405 107581513 -135082840 + L1MA3 LINE L1 6187 6300 -5 23 0 0 0 chr1 107581564 107581587 -135082766 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 107581798 107581820 -135082533 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 107581945 107581966 -135082387 + AT_rich Low_complexity Low_complexity 1 21 0 427 257 9 106 chr1 107581984 107582202 -135082151 + L2 LINE L2 3117 3313 0 2430 65 0 34 chr1 107582871 107583192 -135081161 + AluY SINE Alu 1 310 -1 396 0 0 0 chr1 107583506 107583550 -135080803 + (TA)n Simple_repeat Simple_repeat 1 44 0 348 176 29 0 chr1 107583680 107583748 -135080605 - L1MDa LINE L1 -4564 1976 1907 3478 102 10 0 chr1 107584097 107584609 -135079744 + L1PA13 LINE L1 5647 6163 0 2217 111 29 20 chr1 107585308 107585649 -135078704 - THE1B LTR MaLR -20 344 1 25 0 0 0 chr1 107585682 107585707 -135078646 + AT_rich Low_complexity Low_complexity 1 25 0 7343 210 102 18 chr1 107585965 107587788 -135076565 - L1MDa LINE L1 -4468 2072 96 223 347 74 23 chr1 107590053 107590229 -135074124 - MIR SINE MIR -58 204 20 2066 219 56 105 chr1 107591062 107591918 -135072435 - L1ME3 LINE L1 -878 5268 4455 * 5092 141 2 2 chr1 107591902 107592701 -135071652 - L1PA13 LINE L1 -3 6160 5362 1714 241 68 15 chr1 107592724 107593251 -135071102 - L1ME3 LINE L1 -1687 4459 3905 * 2003 232 68 10 chr1 107593243 107593898 -135070455 + L1ME2 LINE L1 5243 5938 -226 510 278 5 63 chr1 107594017 107594208 -135070145 + L1ME2 LINE L1 5976 6155 -9 4825 161 28 42 chr1 107594463 107594794 -135069559 - L1PB4 LINE L1 0 6156 5822 1942 127 3 10 chr1 107594794 107595102 -135069251 + AluSx SINE Alu 5 310 -2 4825 161 28 42 chr1 107595102 107596337 -135068016 - L1PB4 LINE L1 -334 5822 4612 904 200 144 49 chr1 107598028 107598333 -135066020 - MER46C DNA MER2_type -4 334 1 257 305 37 0 chr1 107598333 107598415 -135065938 - MIR SINE MIR -105 157 73 281 331 30 15 chr1 107598854 107598987 -135065366 + MER5A DNA MER1_type 46 180 -9 357 109 0 0 chr1 107599523 107599578 -135064775 + (CA)n Simple_repeat Simple_repeat 2 56 0 309 0 0 0 chr1 107599625 107599662 -135064691 + L1PA6 LINE L1 6111 6147 -7 22 35 0 0 chr1 107599669 107599698 -135064655 + AT_rich Low_complexity Low_complexity 1 29 0 240 140 180 0 chr1 107601789 107601839 -135062514 - L2 LINE L2 -1 3312 3254 480 339 11 6 chr1 107601845 107602025 -135062328 + L1ME1 LINE L1 5963 6143 -23 210 291 94 8 chr1 107602032 107602149 -135062204 + L3 LINE CR1 1345 1471 -106 776 357 55 18 chr1 107602189 107602626 -135061727 + L2 LINE L2 2818 3270 -2 2552 99 3 46 chr1 107602629 107602975 -135061378 + THE1C LTR MaLR 1 360 -15 243 0 0 0 chr1 107602975 107603002 -135061351 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2029 113 0 0 chr1 107603004 107603278 -135061075 - AluSc SINE Alu -35 274 1 2552 99 3 46 chr1 107603278 107603320 -135061033 + THE1C LTR MaLR 361 375 0 195 363 23 23 chr1 107603462 107603633 -135060720 + L2 LINE L2 2201 2371 -943 363 23 0 0 chr1 107603995 107604039 -135060314 + (GA)n Simple_repeat Simple_repeat 1 44 0 828 100 0 0 chr1 107604045 107604165 -135060188 + (TA)n Simple_repeat Simple_repeat 2 121 0 1600 174 51 14 chr1 107604570 107604752 -135059601 - AluJo SINE Alu -7 305 106 219 36 0 0 chr1 107604752 107604780 -135059573 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1600 174 51 14 chr1 107604780 107604891 -135059462 - AluJo SINE Alu -206 106 1 748 270 10 10 chr1 107605038 107605242 -135059111 - MIR SINE MIR -3 259 56 328 268 203 39 chr1 107606549 107606702 -135057651 - MER5A DNA MER1_type -6 183 6 338 319 80 37 chr1 107608120 107608283 -135056070 + MIR SINE MIR 20 189 -73 331 256 154 26 chr1 107609203 107609359 -135054994 - MIR3 SINE MIR -31 177 2 181 370 65 11 chr1 107609420 107609512 -135054841 - MIR SINE MIR -76 132 36 25 0 0 0 chr1 107610027 107610052 -135054301 + AT_rich Low_complexity Low_complexity 1 25 0 618 12 37 0 chr1 107610359 107610441 -135053912 + L1PA2 LINE L1 6071 6155 0 225 0 0 0 chr1 107610596 107610621 -135053732 + (A)n Simple_repeat Simple_repeat 1 25 0 419 232 30 0 chr1 107611360 107611459 -135052894 + MER94 DNA DNA 4 105 -29 2604 142 24 20 chr1 107611787 107612280 -135052073 - L1MC2 LINE L1 -5 6339 5845 21 57 0 0 chr1 107612391 107612426 -135051927 + AT_rich Low_complexity Low_complexity 1 35 0 254 236 130 41 chr1 107612453 107612576 -135051777 - L1MC4 LINE L1 -326 7716 7583 547 247 96 24 chr1 107612672 107612838 -135051515 - MER45B DNA AcHobo -725 315 138 472 228 103 15 chr1 107612823 107612959 -135051394 - MER21B LTR ERV1 -361 502 355 * 673 309 20 24 chr1 107613132 107613381 -135050972 - MIR SINE MIR -13 249 2 450 0 0 0 chr1 107613441 107613491 -135050862 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 29 chr1 107614764 107614783 -135049570 + AT_rich Low_complexity Low_complexity 1 19 -14 6408 24 0 0 chr1 107614783 107615527 -135048826 - L1PA3 LINE L1 -3 6152 5409 * 8983 21 1 0 chr1 107615526 107617349 -135047004 + L1PA3 LINE L1 4327 6152 -3 23 0 0 29 chr1 107615527 107617363 -135046990 + AT_rich Low_complexity Low_complexity 19 33 0 2382 264 94 30 chr1 107618481 107618545 -135045808 + L1ME LINE L1 2 60 -5918 468 0 0 0 chr1 107618545 107618597 -135045756 + (CA)n Simple_repeat Simple_repeat 2 53 0 2382 264 94 30 chr1 107618597 107619626 -135044727 + L1ME LINE L1 60 1051 -4927 218 236 0 14 chr1 107619974 107620046 -135044307 + CT-rich Low_complexity Low_complexity 3 73 0 794 273 41 36 chr1 107622333 107622553 -135041800 - MIR SINE MIR -2 260 40 2041 116 7 7 chr1 107623770 107624071 -135040282 + AluSx SINE Alu 1 301 -11 2298 95 0 0 chr1 107624189 107624493 -135039860 + AluSx SINE Alu 6 309 -3 572 162 68 26 chr1 107624808 107624925 -135039428 - L1MDa LINE L1 -6405 135 14 24 67 0 0 chr1 107625415 107625460 -135038893 + AT_rich Low_complexity Low_complexity 1 45 0 2123 109 0 20 chr1 107626367 107626670 -135037683 + AluSx SINE Alu 10 306 -6 25 0 0 0 chr1 107626948 107626973 -135037380 + AT_rich Low_complexity Low_complexity 1 25 0 184 50 100 0 chr1 107627409 107627449 -135036904 + (TTAAA)n Simple_repeat Simple_repeat 3 46 0 2133 142 19 87 chr1 107627479 107627950 -135036403 + L1MC1 LINE L1 5887 6325 -8 2148 92 0 71 chr1 107627957 107628294 -135036059 + AluSq SINE Alu 1 313 0 563 318 85 0 chr1 107630746 107630957 -135033396 + MIR SINE MIR 33 261 -1 307 372 55 6 chr1 107632333 107632497 -135031856 - MIR SINE MIR -12 250 79 317 392 39 35 chr1 107632634 107632866 -135031487 + MIR SINE MIR 2 234 -28 396 0 0 0 chr1 107633147 107633191 -135031162 + (TA)n Simple_repeat Simple_repeat 1 44 0 338 267 96 30 chr1 107634497 107634632 -135029721 - MIR SINE MIR -18 244 101 30 83 0 0 chr1 107636252 107636324 -135028029 + AT_rich Low_complexity Low_complexity 1 72 0 300 232 0 0 chr1 107637238 107637363 -135026990 + A-rich Low_complexity Low_complexity 1 125 0 302 271 0 0 chr1 107637936 107637984 -135026369 + A-rich Low_complexity Low_complexity 1 48 0 1670 131 40 77 chr1 107638029 107638326 -135026027 - AluJo SINE Alu -14 298 13 228 323 30 90 chr1 107638511 107638678 -135025675 - MIR3 SINE MIR -38 170 14 749 318 121 5 chr1 107638945 107639367 -135024986 + L2 LINE L2 2843 3313 0 466 149 0 0 chr1 107640306 107640380 -135023973 - MSTD LTR MaLR 0 396 323 6759 55 0 1 chr1 107640381 107641223 -135023130 - L1PA6 LINE L1 0 6154 5314 253 125 0 0 chr1 107641218 107641258 -135023095 + L1P3 LINE L1 1685 1724 -4737 * 1195 191 47 100 chr1 107641282 107641643 -135022710 - MSTD LTR MaLR -54 342 1 736 292 102 7 chr1 107641648 107641932 -135022421 - MLT1A2-int LTR MaLR -6 1729 1419 47 73 0 0 chr1 107641953 107642049 -135022304 + AT_rich Low_complexity Low_complexity 1 96 0 5730 243 36 37 chr1 107642580 107644059 -135020294 - MLT1A2-int LTR MaLR -257 1478 1 1407 194 28 77 chr1 107644060 107644452 -135019901 - MLT1A2 LTR MaLR 0 374 2 219 237 216 10 chr1 107644611 107644708 -135019645 + L2 LINE L2 3192 3308 -5 309 314 39 45 chr1 107645415 107645571 -135018782 - L2 LINE L2 -1 3312 3158 2115 175 41 19 chr1 107648739 107649156 -135015197 + MSTB LTR MaLR 1 426 0 568 88 0 0 chr1 107649220 107649300 -135015053 + MADE1 DNA Mariner 1 80 0 181 396 28 22 chr1 107649614 107649796 -135014557 - L2 LINE L2 -367 2947 2765 * 304 355 25 16 chr1 107649785 107649906 -135014447 + L2 LINE L2 2978 3099 -173 261 270 60 92 chr1 107649950 107650135 -135014218 + MIR SINE MIR 6 184 -78 631 326 61 15 chr1 107650454 107650718 -135013635 + L2 LINE L2 2066 2341 -973 316 174 102 102 chr1 107650718 107650816 -135013537 - L1PA16 LINE L1 -1046 5100 5003 * 3144 251 16 25 chr1 107650814 107651215 -135013138 + L1PA16 LINE L1 5090 5493 -673 246 98 0 0 chr1 107651215 107651256 -135013097 + Alu SINE Alu 258 298 -2 3144 251 16 25 chr1 107651256 107651935 -135012418 + L1PA16 LINE L1 5493 6166 0 222 37 0 0 chr1 107651955 107651982 -135012371 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 928 308 111 45 chr1 107651995 107652527 -135011826 + L2 LINE L2 2348 2914 -400 688 174 0 0 chr1 107653565 107653680 -135010673 - L1PA16 LINE L1 -10 6156 6042 263 176 0 0 chr1 107653799 107653850 -135010503 + HAL1 LINE L1 147 197 -2310 1914 119 4 0 chr1 107654046 107654350 -135010003 - AluSx SINE Alu 0 317 13 679 248 119 88 chr1 107654427 107654954 -135009399 + HAL1 LINE L1 528 1088 -1419 3454 142 38 6 chr1 107654954 107655582 -135008771 + L1MA6 LINE L1 5650 6297 -3 679 248 119 88 chr1 107655582 107655845 -135008508 + HAL1 LINE L1 1088 1342 -1165 37839 88 10 8 chr1 107705877 107711858 -134952495 - L1PA6 LINE L1 -146 6008 14 1557 173 39 7 chr1 107711860 107712144 -134952209 + L1PB4 LINE L1 5849 6141 -15 4455 179 31 69 chr1 107712152 107714232 -134950121 + L1MA7 LINE L1 4114 6084 -207 968 145 26 67 chr1 107714334 107714603 -134949750 + L1MA7 LINE L1 6034 6291 0 226 301 0 65 chr1 107714951 107715044 -134949309 + L2 LINE L2 3186 3272 0 201 156 0 0 chr1 107715044 107715076 -134949277 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 786 239 42 2 chr1 107715765 107715954 -134948399 - MIR SINE MIR -63 145 3 1919 268 84 4 chr1 107717568 107718328 -134946025 - L1MEc LINE L1 -2457 3758 2938 2201 76 42 0 chr1 107718331 107718619 -134945734 + AluSp SINE Alu 1 300 -13 3543 254 65 36 chr1 107718619 107720535 -134943818 - L1MEc LINE L1 -4087 2309 332 478 243 14 14 chr1 107720560 107720700 -134943653 - L1MEc LINE L1 -6203 193 54 24 0 0 0 chr1 107720842 107720866 -134943487 + AT_rich Low_complexity Low_complexity 1 24 0 383 241 193 30 chr1 107722648 107722814 -134941539 + MIR SINE MIR 60 252 -10 23 0 0 0 chr1 107722826 107722849 -134941504 + AT_rich Low_complexity Low_complexity 1 23 0 294 217 0 0 chr1 107722914 107722983 -134941370 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 245 304 9 62 chr1 107722991 107723103 -134941250 - MER5B DNA MER1_type -72 106 1 378 231 54 54 chr1 107723105 107723235 -134941118 + Charlie4a DNA MER1_type 1 130 -378 2941 151 28 30 chr1 107723270 107723845 -134940508 + MER49 LTR ERV1 204 777 -146 755 176 49 0 chr1 107723871 107724013 -134940340 + MER49 LTR ERV1 691 839 -84 2290 106 0 3 chr1 107724063 107724364 -134939989 - AluSq SINE Alu -13 300 1 1171 205 136 6 chr1 107724393 107724724 -134939629 + Charlie4a DNA MER1_type 132 505 -3 248 278 0 0 chr1 107725272 107725326 -134939027 + polypyrimidine Low_complexity Low_complexity 2 55 0 270 298 135 10 chr1 107726298 107726402 -134937951 - L2 LINE L2 -5 3308 3192 832 199 6 28 chr1 107726490 107726671 -134937682 - MER69A DNA AcHobo 0 177 1 1810 122 26 4 chr1 107729820 107730090 -134934263 + AluSx SINE Alu 1 276 -36 239 200 14 14 chr1 107730275 107730345 -134934008 + T-rich Low_complexity Low_complexity 2 71 0 240 211 0 0 chr1 107731299 107731356 -134932997 + T-rich Low_complexity Low_complexity 1 57 0 230 197 56 0 chr1 107731426 107731497 -134932856 + (TA)n Simple_repeat Simple_repeat 2 76 0 1594 130 7 44 chr1 107731688 107731958 -134932395 + AluJb SINE Alu 21 280 -32 204 333 0 0 chr1 107732914 107732971 -134931382 - MIR SINE MIR -110 98 42 180 328 148 16 chr1 107734298 107734426 -134929927 + MIR SINE MIR 112 256 -6 639 303 153 50 chr1 107735130 107736246 -134928107 + L1MEd LINE L1 6 1236 -4883 447 307 83 46 chr1 107736280 107736688 -134927665 + HAL1b LINE L1 321 5934 -211 1365 193 151 37 chr1 107737289 107737563 -134926790 + LTR48 LTR ERV1 3 245 -542 2256 99 7 0 chr1 107737563 107737866 -134926487 + AluSp SINE Alu 1 305 -8 1365 193 151 37 chr1 107737866 107738207 -134926146 + LTR48 LTR ERV1 245 769 -18 26 0 0 0 chr1 107738460 107738486 -134925867 + AT_rich Low_complexity Low_complexity 1 26 0 4837 147 45 18 chr1 107739213 107739950 -134924403 + MER4D LTR ERV1 1 717 252 2096 124 60 14 chr1 107739950 107740298 -134924055 + THE1B LTR MaLR 1 364 0 11112 108 8 14 chr1 107740298 107740763 -134923590 + THE1B-int LTR MaLR 1 467 -1113 2125 121 0 0 chr1 107740763 107741104 -134923249 + AluSx SINE Alu 1 341 0 11112 108 8 14 chr1 107741104 107742227 -134922126 + THE1B-int LTR MaLR 467 1580 0 2186 119 50 42 chr1 107742227 107742588 -134921765 + THE1B LTR MaLR 1 364 0 4837 147 45 18 chr1 107742588 107742696 -134921657 + MER4D LTR ERV1 326 430 -35 1227 183 43 0 chr1 107742698 107742906 -134921447 + AluJb SINE Alu 65 281 -31 268 173 0 0 chr1 107742908 107742960 -134921393 + MER4D LTR ERV1 821 872 0 298 303 9 0 chr1 107743528 107743637 -134920716 - MER103 DNA DNA -45 121 12 4407 157 25 25 chr1 107743710 107744476 -134919877 + LTR39 LTR ERV1 1 766 -17 237 214 29 43 chr1 107744494 107744564 -134919789 - Charlie7 DNA MER1_type 0 2612 2544 958 189 12 141 chr1 107744786 107745081 -134919272 - MER58B DNA MER1_type -2079 341 108 2056 176 11 8 chr1 107745081 107745445 -134918908 + MLT1A1 LTR MaLR 1 365 0 958 189 12 141 chr1 107745445 107745540 -134918813 - MER58B DNA MER1_type -2312 108 2 294 87 0 0 chr1 107746204 107746250 -134918103 + (A)n Simple_repeat Simple_repeat 1 46 0 184 340 135 14 chr1 107746546 107746687 -134917666 + L3 LINE CR1 348 505 -1072 367 319 47 26 chr1 107746978 107747169 -134917184 + MIR SINE MIR 2 196 -66 2108 112 28 0 chr1 107747522 107747808 -134916545 + AluSq SINE Alu 1 294 -19 232 175 16 48 chr1 107748129 107748192 -134916161 + L3 LINE CR1 705 765 -812 1453 186 4 23 chr1 107750469 107750733 -134913620 + AluJb SINE Alu 1 259 -53 487 238 111 6 chr1 107752457 107752639 -134911714 + L1ME1 LINE L1 4096 4299 -1847 359 260 71 8 chr1 107752665 107752792 -134911561 + MER96B DNA MER1_type? 283 417 0 2850 237 55 20 chr1 107752807 107753760 -134910593 + L1ME1 LINE L1 4271 5256 -890 1895 209 44 74 chr1 107753747 107754355 -134909998 + L1ME1 LINE L1 5552 6141 -25 * 26 50 0 0 chr1 107754357 107754397 -134909956 + AT_rich Low_complexity Low_complexity 1 40 0 253 363 19 35 chr1 107756442 107756615 -134907738 - MIR SINE MIR -75 133 8 21 0 0 0 chr1 107757241 107757262 -134907091 + AT_rich Low_complexity Low_complexity 1 21 0 641 152 0 0 chr1 107758071 107758170 -134906183 - AluSg/x SINE Alu -16 296 198 453 317 36 12 chr1 107758961 107759154 -134905199 - MIR SINE MIR -32 230 35 22 56 0 0 chr1 107759703 107759739 -134904614 + AT_rich Low_complexity Low_complexity 1 36 0 213 237 282 23 chr1 107760425 107760556 -134903797 + MIR3 SINE MIR 43 207 -1 469 350 36 78 chr1 107765472 107766011 -134898342 + L2 LINE L2 2752 3254 -18 28 29 0 0 chr1 107766472 107766507 -134897846 + AT_rich Low_complexity Low_complexity 1 35 0 284 302 28 9 chr1 107767059 107767165 -134897188 - L2 LINE L2 0 3313 3206 190 0 67 0 chr1 107767200 107767230 -134897123 + (TTG)n Simple_repeat Simple_repeat 2 33 0 196 312 112 24 chr1 107767634 107767759 -134896594 - MIR SINE MIR -64 144 23 * 305 359 20 86 chr1 107767752 107768053 -134896300 - L2 LINE L2 -49 3223 2943 443 358 25 50 chr1 107768085 107768367 -134895986 - L2 LINE L2 -412 2902 2628 248 325 108 0 chr1 107768475 107768632 -134895721 + LTR33 LTR ERVL 1 174 -347 324 345 17 4 chr1 107768880 107769060 -134895293 + L1ME LINE L1 5499 5633 -488 23 0 0 0 chr1 107769131 107769154 -134895199 + AT_rich Low_complexity Low_complexity 1 23 0 305 354 47 16 chr1 107769542 107769734 -134894619 - L2 LINE L2 -833 2481 2284 2160 113 17 0 chr1 107770207 107770500 -134893853 + AluSx SINE Alu 1 298 -14 183 42 0 0 chr1 107771280 107771304 -134893049 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 194 250 75 38 chr1 107773466 107773546 -134890807 - L2 LINE L2 -2 3270 3188 35 0 0 0 chr1 107773998 107774033 -134890320 + AT_rich Low_complexity Low_complexity 1 35 0 230 282 0 59 chr1 107774351 107774436 -134889917 - MIR SINE MIR -73 189 110 568 331 152 30 chr1 107774462 107774669 -134889684 - L2 LINE L2 -2 3311 3130 1680 146 103 0 chr1 107774669 107774950 -134889403 - AluSx SINE Alu -2 310 1 568 331 152 30 chr1 107774950 107775105 -134889248 - L2 LINE L2 -183 3130 2905 264 276 7 117 chr1 107775266 107775411 -134888942 - L2 LINE L2 -5 3267 3139 28 29 0 0 chr1 107775500 107775535 -134888818 + AT_rich Low_complexity Low_complexity 1 35 0 1734 181 69 41 chr1 107775608 107776155 -134888198 - MLT2A2 LTR ERVL 0 554 1 7711 99 19 2 chr1 107776155 107777230 -134887123 - HERVL-A2 LTR ERVL 0 5654 4561 1056 60 27 7 chr1 107777540 107777689 -134886664 - L1PA8 LINE L1 -239 5933 5782 * 1798 33 5 0 chr1 107777683 107777898 -134886455 + L1PA8 LINE L1 5565 5780 -392 198 329 27 27 chr1 107779504 107779577 -134884776 - L3 LINE CR1 -1 1576 1504 492 305 120 10 chr1 107781922 107782122 -134882231 - MIR SINE MIR -7 255 34 2453 68 10 0 chr1 107782518 107782826 -134881527 + AluY SINE Alu 1 311 0 1783 125 52 7 chr1 107782841 107783129 -134881224 + AluSx SINE Alu 1 301 -11 227 291 76 57 chr1 107783657 107783815 -134880538 + MIR SINE MIR 6 166 -96 938 300 12 4 chr1 107784071 107784321 -134880032 - MIR SINE MIR 0 262 11 23 0 0 0 chr1 107784420 107784443 -134879910 + AT_rich Low_complexity Low_complexity 1 23 0 334 264 82 9 chr1 107784615 107784725 -134879628 - L3 LINE CR1 -103 1474 1357 207 0 0 0 chr1 107784946 107784969 -134879384 + (TG)n Simple_repeat Simple_repeat 2 24 0 377 277 30 0 chr1 107784988 107785089 -134879264 + MIR SINE MIR 28 131 -131 40 0 0 0 chr1 107785138 107785178 -134879175 + AT_rich Low_complexity Low_complexity 1 40 0 196 118 20 20 chr1 107785443 107785494 -134878859 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 557 341 126 18 chr1 107785657 107785675 -134878678 + L3 LINE CR1 1021 1036 -541 2123 98 7 3 chr1 107785675 107785971 -134878382 - AluSx SINE Alu -11 301 5 557 341 126 18 chr1 107785971 107786342 -134878011 + L3 LINE CR1 1036 1452 -125 3234 159 23 25 chr1 107786908 107787550 -134876803 - L1MA9 LINE L1 -1 6311 5671 1689 185 5 63 chr1 107787550 107787811 -134876542 + L1M2 LINE L1 5322 5558 -754 1876 161 0 28 chr1 107787811 107788128 -134876225 + AluJb SINE Alu 2 309 -3 1689 185 5 63 chr1 107788128 107788233 -134876120 + L1M2 LINE L1 5558 5667 -645 306 311 89 58 chr1 107789132 107789527 -134874826 + L1ME LINE L1 4754 5160 -986 837 231 67 0 chr1 107789656 107789864 -134874489 - MER58A DNA MER1_type -2 222 1 259 286 57 43 chr1 107790704 107790844 -134873509 + L1MC/D LINE L1 5606 5747 -2061 3896 129 121 5 chr1 107790849 107791521 -134872832 - Tigger1 DNA MER2_type 0 2418 1669 567 91 0 0 chr1 107791531 107791608 -134872745 - Tigger1 DNA MER2_type -1946 472 396 407 195 0 0 chr1 107791604 107791681 -134872672 - Tigger1 DNA MER2_type -750 1668 1592 * 2583 14 0 0 chr1 107791820 107792106 -134872247 - AluYb8 SINE Alu -6 312 27 8777 152 43 19 chr1 107792106 107792489 -134871864 - Tigger1 DNA MER2_type -829 1589 1217 2206 129 0 0 chr1 107792489 107792798 -134871555 - AluSc SINE Alu 0 309 1 8777 152 43 19 chr1 107792798 107793965 -134870388 - Tigger1 DNA MER2_type -1201 1217 1 263 308 70 13 chr1 107794022 107794202 -134870151 + MLT1J LTR MaLR 6 201 -310 247 292 14 0 chr1 107794271 107794343 -134870010 + HAL1 LINE L1 1503 1575 -932 330 335 87 35 chr1 107794654 107794884 -134869469 + HAL1 LINE L1 2265 2506 -1 2304 92 3 3 chr1 107794911 107795215 -134869138 + AluSq SINE Alu 1 304 -9 504 291 80 47 chr1 107795277 107795814 -134868539 + L1ME LINE L1 5266 5819 -302 181 292 69 0 chr1 107795818 107795890 -134868463 - L2 LINE L2 -74 3239 3163 488 303 128 44 chr1 107797001 107797569 -134866784 - HAL1 LINE L1 -229 2278 1663 979 235 146 36 chr1 107797584 107797639 -134866714 + MSTD LTR MaLR 1 49 -347 1558 104 46 0 chr1 107797639 107797879 -134866474 + L1PA10 LINE L1 5917 6167 -1 979 235 146 36 chr1 107797879 107798180 -134866173 + MSTD LTR MaLR 49 396 0 807 289 129 28 chr1 107798182 107798237 -134866116 - HAL1 LINE L1 -889 1618 1570 2145 123 3 0 chr1 107798237 107798546 -134865807 + AluSx SINE Alu 3 312 0 807 289 129 28 chr1 107798546 107799178 -134865175 - HAL1 LINE L1 -937 1570 861 496 242 130 43 chr1 107799188 107799413 -134864940 - L1MEd LINE L1 -4862 1257 1064 2031 129 0 13 chr1 107799413 107799715 -134864638 - AluSx SINE Alu -14 298 1 496 242 130 43 chr1 107799715 107799902 -134864451 - L1MEd LINE L1 -5055 1064 895 245 245 0 116 chr1 107799996 107800143 -134864210 - HAL1 LINE L1 -2295 212 83 328 250 17 25 chr1 107801383 107801503 -134862850 + L1MC4a LINE L1 5777 5895 -1913 * 4020 195 16 37 chr1 107801488 107801605 -134862748 + L1MD2 LINE L1 5328 5446 -913 2515 61 0 0 chr1 107801605 107801915 -134862438 + AluY SINE Alu 1 310 -1 4020 195 16 37 chr1 107801915 107802719 -134861634 + L1MD2 LINE L1 5446 6230 -129 2890 146 10 14 chr1 107802809 107803297 -134861056 + MER66B LTR ERV1 1 486 0 455 216 9 9 chr1 107803629 107803740 -134860613 + L1MD2 LINE L1 6108 6218 -141 368 284 42 84 chr1 107803849 107804064 -134860289 - MIR SINE MIR 0 262 57 571 266 13 19 chr1 107804225 107804383 -134859970 + MIR SINE MIR 91 247 -15 225 118 98 20 chr1 107804525 107804627 -134859726 + (TA)n Simple_repeat Simple_repeat 2 111 0 * 395 157 27 65 chr1 107804556 107804741 -134859612 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 206 125 0 25 chr1 107805669 107805709 -134858644 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 23 78 0 0 chr1 107807070 107807121 -134857232 + AT_rich Low_complexity Low_complexity 1 51 0 346 254 12 13 chr1 107807215 107807311 -134857042 + MIR SINE MIR 63 158 -50 410 295 163 0 chr1 107807581 107807710 -134856643 + MIR SINE MIR 1 150 -112 2390 97 3 0 chr1 107807745 107808055 -134856298 + AluSx SINE Alu 1 311 -1 591 276 145 18 chr1 107808076 107808304 -134856049 - MIR SINE MIR -3 259 3 1695 188 0 7 chr1 107808376 107808679 -134855674 + AluJo SINE Alu 1 301 -11 300 384 72 0 chr1 107808928 107809053 -134855300 + L2 LINE L2 3137 3270 -2 1563 150 47 18 chr1 107811089 107811363 -134852990 + AluJo SINE Alu 10 291 -21 804 301 9 9 chr1 107811417 107811636 -134852717 + MIR SINE MIR 23 241 -21 244 320 27 0 chr1 107811937 107812012 -134852341 + L3 LINE CR1 1228 1304 -273 288 226 23 30 chr1 107812016 107812149 -134852204 + T-rich Low_complexity Low_complexity 1 132 0 225 233 10 19 chr1 107812494 107812597 -134851756 + GA-rich Low_complexity Low_complexity 5 106 0 24 0 0 0 chr1 107812757 107812781 -134851572 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 107813602 107813623 -134850730 + AT_rich Low_complexity Low_complexity 1 21 0 256 341 159 0 chr1 107815058 107815146 -134849207 + MER91A DNA MER1_type 24 125 -71 248 250 15 29 chr1 107815740 107815808 -134848545 - L2 LINE L2 -17 3296 3230 1795 311 145 45 chr1 107817598 107819399 -134844954 - L2 LINE L2 -4 3309 1313 1033 172 0 16 chr1 107819403 107819589 -134844764 + FRAM SINE Alu 1 175 -1 23 0 0 0 chr1 107820231 107820254 -134844099 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 107820878 107820899 -134843454 + AT_rich Low_complexity Low_complexity 1 21 0 520 343 90 42 chr1 107821075 107821675 -134842678 + L2 LINE L2 1812 2440 -874 546 283 93 3 chr1 107821679 107821847 -134842506 - MER5B DNA MER1_type 0 189 1 182 320 243 17 chr1 107821853 107822034 -134842319 + L2 LINE L2 2521 2742 -572 776 171 46 4 chr1 107822356 107822593 -134841760 - Tigger1 DNA MER2_type -1 2417 2078 506 206 0 0 chr1 107822601 107822703 -134841650 - FRAM SINE Alu -6 170 69 3946 133 41 17 chr1 107822704 107823544 -134840809 - Tigger1 DNA MER2_type -325 2093 1275 7314 42 0 0 chr1 107823544 107824616 -134839737 - L1PA5 LINE L1 0 6154 5083 3946 133 41 17 chr1 107824616 107825001 -134839352 - Tigger1 DNA MER2_type -1143 1275 1 213 321 19 66 chr1 107825028 107825134 -134839219 - L2 LINE L2 -298 2974 2874 46 0 0 0 chr1 107825411 107825457 -134838896 + AT_rich Low_complexity Low_complexity 1 46 0 25 75 0 0 chr1 107825524 107825577 -134838776 + AT_rich Low_complexity Low_complexity 1 53 0 392 289 111 32 chr1 107825606 107825796 -134838557 - MIR SINE MIR -56 206 2 1369 259 136 10 chr1 107825857 107826343 -134838010 + MLT1H LTR MaLR 2 548 -1 408 351 65 0 chr1 107826362 107826547 -134837806 - MIR SINE MIR 0 262 66 23 0 0 0 chr1 107827372 107827395 -134836958 + AT_rich Low_complexity Low_complexity 1 23 0 2379 135 26 9 chr1 107827597 107828018 -134836335 - L1MC1 LINE L1 -155 6973 6546 17169 48 2 0 chr1 107828118 107830961 -134833392 - L1PA5 LINE L1 -88 6066 3218 6655 202 24 18 chr1 107830970 107831387 -134832966 - L1MC1 LINE L1 -743 6198 5785 2057 121 0 0 chr1 107831387 107831692 -134832661 - AluSx SINE Alu 0 305 1 6655 202 24 18 chr1 107831692 107833216 -134831137 - L1MC1 LINE L1 -1156 5785 4416 413 192 0 13 chr1 107833217 107833295 -134831058 - Tigger5 DNA MER2_type 0 2323 2247 348 157 14 57 chr1 107833300 107833370 -134830983 + Tigger5 DNA MER2_type 2251 2317 -6 261 222 0 32 chr1 107833372 107833435 -134830918 - Tigger5 DNA MER2_type -2244 79 19 966 244 75 6 chr1 107833435 107833754 -134830599 - L1MC1 LINE L1 -2524 4417 4077 210 366 37 0 chr1 107833877 107833959 -134830394 + MIR SINE MIR 58 142 -66 916 195 12 0 chr1 107836483 107836647 -134827706 - FRAM SINE Alu -11 165 1 1261 166 5 0 chr1 107836832 107837037 -134827316 + AluJo SINE Alu 87 292 -20 345 47 0 0 chr1 107837037 107837080 -134827273 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 389 30 0 chr1 107837093 107837224 -134827129 - L2 LINE L2 -221 3051 2917 218 264 55 66 chr1 107838288 107838379 -134825974 + L2 LINE L2 3141 3230 -42 3026 176 60 31 chr1 107839642 107840356 -134823997 + L1MB7 LINE L1 5424 6158 -26 243 0 0 0 chr1 107840525 107840552 -134823801 + (TG)n Simple_repeat Simple_repeat 2 28 0 645 174 20 85 chr1 107840689 107840890 -134823463 - L1MA7 LINE L1 -5 6286 6099 25 0 0 0 chr1 107842455 107842480 -134821873 + AT_rich Low_complexity Low_complexity 1 25 0 938 265 59 61 chr1 107842866 107843007 -134821346 - L1MC1 LINE L1 -4888 1535 1395 4486 121 12 20 chr1 107843007 107843759 -134820594 - L1MA4 LINE L1 -6 6294 5549 938 265 59 61 chr1 107843759 107844293 -134820060 - L1MC1 LINE L1 -5028 1395 1129 472 313 89 44 chr1 107844598 107845071 -134819282 - L1MC1 LINE L1 -5911 512 19 195 120 0 0 chr1 107845296 107845321 -134819032 + (T)n Simple_repeat Simple_repeat 1 25 0 1590 163 45 31 chr1 107846128 107846417 -134817936 + AluJo SINE Alu 1 293 -19 586 315 87 12 chr1 107847092 107847425 -134816928 - L2 LINE L2 -406 2908 2551 28 0 0 0 chr1 107847540 107847568 -134816785 + AT_rich Low_complexity Low_complexity 1 28 0 547 278 69 26 chr1 107848067 107848459 -134815894 + LTR16B LTR ERVL 32 463 -1 214 113 100 50 chr1 107850149 107850229 -134814124 + A-rich Low_complexity Low_complexity 4 87 0 195 100 0 0 chr1 107850366 107850396 -134813957 + (CA)n Simple_repeat Simple_repeat 2 31 0 380 254 70 28 chr1 107852538 107852680 -134811673 + L3 LINE CR1 1133 1280 -297 1373 289 60 2 chr1 107852708 107853124 -134811229 - L2 LINE L2 0 3313 2874 186 229 21 21 chr1 107853346 107853394 -134810959 - MIR3 SINE MIR -52 156 109 622 317 55 61 chr1 107853492 107853949 -134810404 + MLT1H LTR MaLR 95 548 -1 268 301 85 67 chr1 107854996 107855325 -134809028 + MLT1H-int LTR MaLR 1033 1367 -4 740 295 36 16 chr1 107855332 107855583 -134808770 + MLT1H LTR MaLR 8 263 -286 251 259 36 71 chr1 107855822 107855934 -134808419 + MLT1H LTR MaLR 395 502 -47 275 256 181 15 chr1 107855935 107856068 -134808285 + MIR SINE MIR 92 246 -16 28 29 0 0 chr1 107856277 107856312 -134808041 + AT_rich Low_complexity Low_complexity 1 35 0 434 318 11 48 chr1 107856317 107856506 -134807847 + L3 LINE CR1 1291 1472 -105 190 303 76 15 chr1 107856891 107856957 -134807396 - L2 LINE L2 -8 3264 3195 21 0 0 0 chr1 107857929 107857950 -134806403 + AT_rich Low_complexity Low_complexity 1 21 0 183 317 49 37 chr1 107861052 107861134 -134803219 + MIR SINE MIR 18 100 -108 200 281 66 58 chr1 107861385 107861506 -134802847 + MIR SINE MIR 132 253 -9 213 227 0 0 chr1 107861566 107861610 -134802743 + CT-rich Low_complexity Low_complexity 1 44 0 211 261 14 14 chr1 107862428 107862497 -134801856 + L3b LINE CR1 1337 1405 -178 219 167 0 21 chr1 107862895 107862943 -134801410 + A-rich Low_complexity Low_complexity 1 47 0 445 311 69 51 chr1 107863451 107863840 -134800513 + L1ME4a LINE L1 5698 6093 -28 2200 112 48 28 chr1 107863894 107864251 -134800102 - THE1B LTR MaLR 0 364 1 283 366 81 12 chr1 107864357 107864529 -134799824 - MIR3 SINE MIR -18 190 7 29 0 0 0 chr1 107864696 107864725 -134799628 + AT_rich Low_complexity Low_complexity 1 29 0 228 231 269 0 chr1 107864891 107864969 -134799384 - L2 LINE L2 -1 3312 3214 6001 76 9 0 chr1 107865238 107866029 -134798324 - L1PA7 LINE L1 -1 6153 5356 * 7188 88 8 2 chr1 107866028 107867087 -134797266 + L1P LINE L1 4351 5416 -738 1540 68 16 0 chr1 107867196 107867387 -134796966 + AluYb8 SINE Alu 2 195 -123 404 181 84 0 chr1 107867907 107867990 -134796363 + L1MCa LINE L1 6 95 -6331 337 23 23 0 chr1 107867990 107868033 -134796320 - L1P3 LINE L1 -594 5560 5517 1666 45 0 0 chr1 107868033 107868257 -134796096 + L1PA7 LINE L1 5942 6166 0 37 69 0 0 chr1 107868281 107868353 -134796000 + AT_rich Low_complexity Low_complexity 1 72 0 2047 213 16 5 chr1 107868353 107868786 -134795567 + L1MCa LINE L1 70 507 -5919 3949 188 36 21 chr1 107868790 107868831 -134795522 + L1MCa LINE L1 1561 1600 -4826 2109 132 3 7 chr1 107868831 107869141 -134795212 + AluSx SINE Alu 1 309 -3 3949 188 36 21 chr1 107869141 107870959 -134793394 + L1MCa LINE L1 1600 3545 -2881 284 286 120 51 chr1 107871073 107871248 -134793105 - L3 LINE CR1 -255 1322 1136 224 403 13 26 chr1 107871886 107872119 -134792234 + L2 LINE L2 2819 3048 -224 786 153 74 18 chr1 107872141 107872304 -134792049 + L1MB2 LINE L1 5993 6164 -7 21 36 0 0 chr1 107872312 107872340 -134792013 + AT_rich Low_complexity Low_complexity 1 28 0 325 297 172 43 chr1 107872530 107872739 -134791614 + L3 LINE CR1 1342 1577 0 1160 252 103 41 chr1 107873086 107873522 -134790831 + L2 LINE L2 2230 2692 -622 418 235 17 17 chr1 107873556 107873671 -134790682 + L1ME1 LINE L1 6058 6331 -3 186 273 91 0 chr1 107873787 107873842 -134790511 + L2 LINE L2 3250 3309 -4 288 0 0 0 chr1 107874067 107874099 -134790254 + (GA)n Simple_repeat Simple_repeat 2 33 0 306 125 0 0 chr1 107874174 107874222 -134790131 + (TG)n Simple_repeat Simple_repeat 2 49 0 342 0 0 0 chr1 107874287 107874325 -134790028 + (TG)n Simple_repeat Simple_repeat 2 39 0 461 269 32 81 chr1 107874693 107874879 -134789474 + MER5B DNA MER1_type 1 177 -1 301 252 106 11 chr1 107875250 107875340 -134789013 - MIR SINE MIR -63 145 54 2324 86 3 0 chr1 107875384 107875686 -134788667 - AluY SINE Alu -8 303 1 23 0 0 0 chr1 107875917 107875940 -134788413 + AT_rich Low_complexity Low_complexity 1 23 0 186 133 0 0 chr1 107876104 107876134 -134788219 + (A)n Simple_repeat Simple_repeat 1 30 0 276 206 0 48 chr1 107876748 107876811 -134787542 + tRNA-Gln-CAG tRNA tRNA 1 60 -15 449 339 194 24 chr1 107876882 107877428 -134786925 + L2 LINE L2 2339 2977 -337 231 333 0 15 chr1 107877590 107877656 -134786697 - L2 LINE L2 -17 3255 3191 705 216 36 0 chr1 107877783 107877950 -134786403 - L1MA10 LINE L1 0 6334 6162 734 170 13 29 chr1 107877963 107878277 -134786076 + CT-rich Low_complexity Low_complexity 1 309 0 7143 187 119 25 chr1 107878292 107878515 -134785838 - L1MA10 LINE L1 -192 5997 5796 2599 55 0 0 chr1 107878515 107878826 -134785527 - AluY SINE Alu 0 311 1 7143 187 119 25 chr1 107878826 107881231 -134783122 - L1MA10 LINE L1 -393 5796 3068 218 32 32 0 chr1 107881231 107881262 -134783091 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7143 187 119 25 chr1 107881262 107881422 -134782931 - L1MA10 LINE L1 -3121 3068 2925 728 75 9 9 chr1 107881427 107881533 -134782820 - MSTA LTR MaLR -322 106 1 188 156 31 0 chr1 107882405 107882437 -134781916 - L2 LINE L2 -18 3295 3263 181 259 161 25 chr1 107882449 107882530 -134781823 - L2 LINE L2 -29 3284 3193 307 333 29 9 chr1 107882766 107882871 -134781482 + MIR3 SINE MIR 9 115 -93 30 27 0 0 chr1 107883168 107883205 -134781148 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 107884213 107884236 -134780117 + AT_rich Low_complexity Low_complexity 1 23 0 1338 94 0 0 chr1 107886224 107886394 -134777959 + AluSp SINE Alu 130 299 -14 328 124 41 10 chr1 107887733 107887830 -134776523 + (TA)n Simple_repeat Simple_repeat 2 101 0 21 0 0 0 chr1 107888923 107888944 -134775409 + AT_rich Low_complexity Low_complexity 1 21 0 252 412 39 0 chr1 107889108 107889261 -134775092 + L2 LINE L2 3107 3265 -7 189 154 0 0 chr1 107889412 107889451 -134774902 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 246 310 0 0 chr1 107889686 107889757 -134774596 - MIR3 SINE MIR -41 167 97 21 0 0 0 chr1 107892742 107892763 -134771590 + AT_rich Low_complexity Low_complexity 1 21 0 247 269 0 0 chr1 107893043 107893095 -134771258 + (CATA)n Simple_repeat Simple_repeat 3 54 0 2132 93 10 26 chr1 107893163 107893474 -134770879 - AluY SINE Alu -5 306 1 2196 91 10 7 chr1 107894585 107894893 -134769460 + AluY SINE Alu 1 309 -2 928 150 19 0 chr1 107896009 107896169 -134768184 + MER5A DNA MER1_type 26 188 -1 1954 123 91 9 chr1 107896315 107896657 -134767696 + THE1C LTR MaLR 4 373 -2 1951 158 0 3 chr1 107897884 107898194 -134766159 - AluJb SINE Alu -3 309 1 339 298 120 13 chr1 107898454 107898612 -134765741 + MIR SINE MIR 54 228 -34 24 0 0 0 chr1 107898697 107898721 -134765632 + AT_rich Low_complexity Low_complexity 1 24 0 2214 180 42 0 chr1 107900631 107901036 -134763317 - MSTB LTR MaLR -4 422 1 1927 144 20 0 chr1 107902375 107902680 -134761673 - AluSx SINE Alu 0 312 2 1988 102 7 3 chr1 107903532 107903825 -134760528 + L1P LINE L1 3851 4144 -2002 684 326 88 16 chr1 107904052 107904543 -134759810 - HAL1b LINE L1 -769 579 54 302 143 89 0 chr1 107907563 107907619 -134756734 - MIR3 SINE MIR -16 192 132 371 327 112 22 chr1 107907671 107907894 -134756459 - L2 LINE L2 -64 3208 2966 188 283 0 38 chr1 107907899 107907952 -134756401 - MIR SINE MIR -142 120 70 418 325 50 12 chr1 107908124 107908284 -134756069 - L2 LINE L2 0 3272 3107 2143 104 3 3 chr1 107910932 107911221 -134753132 + AluSx SINE Alu 1 289 -23 302 125 0 0 chr1 107911351 107911399 -134752954 + L1PA3 LINE L1 6098 6145 -10 321 82 0 0 chr1 107911399 107911448 -134752905 + (TTAAA)n Simple_repeat Simple_repeat 4 52 0 6973 63 2 0 chr1 107911451 107912613 -134751740 + L1PA7 LINE L1 4992 6154 0 1715 132 6 93 chr1 107912942 107913275 -134751078 - AluSx SINE Alu -8 304 1 597 232 114 46 chr1 107913479 107913757 -134750596 - L1MC4a LINE L1 -204 5917 5620 440 213 25 16 chr1 107913810 107913932 -134750421 - L1MC4a LINE L1 -2340 5468 5346 503 311 31 0 chr1 107914041 107914202 -134750151 - MIR SINE MIR 0 262 97 397 341 211 5 chr1 107914588 107914811 -134749542 + L3b LINE CR1 1193 1461 -122 206 277 158 20 chr1 107915311 107915412 -134748941 + L2 LINE L2 2616 2730 -584 284 317 87 0 chr1 107915583 107915687 -134748666 + L2 LINE L2 3134 3246 -26 206 315 130 11 chr1 107915754 107915846 -134748507 - L2 LINE L2 0 3272 3170 189 0 0 0 chr1 107916234 107916255 -134748098 + (CA)n Simple_repeat Simple_repeat 2 22 0 219 291 38 13 chr1 107918466 107918545 -134745808 + L2 LINE L2 3232 3312 -1 1935 166 19 14 chr1 107919823 107920185 -134744168 + MER31A LTR ERV1 1 364 -121 569 147 9 55 chr1 107920226 107920309 -134744044 - MER31A LTR ERV1 -381 104 26 2052 74 15 0 chr1 107920309 107920398 -134743955 + AluY SINE Alu 37 123 -188 243 0 0 0 chr1 107920398 107920425 -134743928 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2052 74 15 0 chr1 107920425 107920605 -134743748 + AluY SINE Alu 123 310 -1 569 147 9 55 chr1 107920605 107920630 -134743723 - MER31A LTR ERV1 -459 26 1 1576 219 0 13 chr1 107920710 107921021 -134743332 + AluJo SINE Alu 2 308 -4 694 254 24 0 chr1 107923002 107923167 -134741186 - MER5A DNA MER1_type -20 169 1 825 207 57 22 chr1 107923212 107923439 -134740914 + MER106A DNA MER1_type 2 236 0 240 293 60 52 chr1 107923728 107923844 -134740509 + MIR SINE MIR 122 238 -24 2096 200 23 58 chr1 107925066 107925606 -134738747 - MER54A LTR ERVL 0 901 164 2114 118 0 19 chr1 107925774 107925797 -134738556 - AluSq SINE Alu -5 308 286 198 0 0 0 chr1 107925797 107925819 -134738534 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2114 118 0 19 chr1 107925819 107926109 -134738244 - AluSq SINE Alu -27 286 1 222 257 176 0 chr1 107926140 107926214 -134738139 - MIR SINE MIR 0 262 176 199 239 22 0 chr1 107926452 107926498 -134737855 - MIR SINE MIR -112 150 104 1028 294 85 53 chr1 107927320 107927993 -134736360 + L2 LINE L2 2592 3296 -17 216 97 0 0 chr1 107927999 107928030 -134736323 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 239 274 16 0 chr1 107928284 107928346 -134736007 - L2 LINE L2 -9 3304 3242 2393 52 0 3 chr1 107928908 107929197 -134735156 - AluY SINE Alu -23 288 1 235 273 18 18 chr1 107932025 107932135 -134732218 + (TA)n Simple_repeat Simple_repeat 1 110 0 22 35 0 0 chr1 107932340 107932369 -134731984 + AT_rich Low_complexity Low_complexity 1 29 0 342 259 132 58 chr1 107932489 107932733 -134731620 + L1ME4a LINE L1 5352 5613 -581 246 232 116 0 chr1 107932973 107933085 -134731268 + L1ME4a LINE L1 5993 6117 -4 192 186 68 68 chr1 107933590 107933649 -134730704 + MIR SINE MIR 91 149 -113 186 191 0 0 chr1 107935087 107935129 -134729224 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 503 331 77 53 chr1 107935287 107935906 -134728447 + L2 LINE L2 2619 3253 -60 362 213 206 45 chr1 107936510 107936665 -134727688 + MIR SINE MIR 83 262 0 256 288 47 53 chr1 107936964 107937134 -134727219 + L2 LINE L2 2142 2310 -1004 231 368 34 34 chr1 107937333 107937450 -134726903 + L2 LINE L2 2507 2623 -691 201 350 103 43 chr1 107937736 107938085 -134726268 + L2 LINE L2 2596 2965 -349 267 277 0 0 chr1 107938259 107938306 -134726047 + L2 LINE L2 3242 3288 -25 * 327 284 68 0 chr1 107938303 107938377 -134725976 + L2 LINE L2 3194 3272 0 240 206 200 100 chr1 107938756 107938916 -134725437 - MIR SINE MIR -12 250 75 2123 114 26 54 chr1 107938931 107939317 -134725036 - THE1C LTR MaLR 0 375 1 237 219 0 0 chr1 107939735 107939776 -134724577 - MIR SINE MIR -118 144 104 358 293 38 30 chr1 107940225 107940358 -134723995 - MIR SINE MIR -70 192 59 389 279 180 31 chr1 107941923 107942145 -134722208 - L2 LINE L2 -527 2787 2533 21 0 0 0 chr1 107943182 107943203 -134721150 + AT_rich Low_complexity Low_complexity 1 21 0 199 345 108 7 chr1 107943446 107943585 -134720768 - L2 LINE L2 -971 2343 2191 194 0 39 0 chr1 107945558 107945584 -134718769 + (TTG)n Simple_repeat Simple_repeat 2 28 0 747 167 0 0 chr1 107945587 107945701 -134718652 - FRAM SINE Alu -31 145 32 2158 125 3 0 chr1 107946342 107946639 -134717714 + AluSx SINE Alu 1 298 -14 32 0 0 0 chr1 107946639 107946671 -134717682 + AT_rich Low_complexity Low_complexity 1 32 0 306 305 35 35 chr1 107947605 107947746 -134716607 + L2 LINE L2 3173 3313 0 1900 173 6 14 chr1 107948377 107948723 -134715630 - MER2 DNA MER2_type 0 344 2 739 233 44 0 chr1 107948723 107948882 -134715471 + MER69A DNA AcHobo 12 177 0 186 244 0 0 chr1 107948882 107948923 -134715430 + L2 LINE L2 3217 3257 -15 828 74 41 0 chr1 107951019 107951140 -134713213 - AluSc SINE Alu -183 126 1 23 0 0 0 chr1 107951371 107951394 -134712959 + AT_rich Low_complexity Low_complexity 1 23 0 186 133 0 0 chr1 107951558 107951588 -134712765 + (A)n Simple_repeat Simple_repeat 1 30 0 276 206 0 48 chr1 107952202 107952265 -134712088 + tRNA-Gln-CAG tRNA tRNA 1 60 -15 441 347 190 22 chr1 107952336 107952883 -134711470 + L2 LINE L2 2339 2977 -337 231 333 0 15 chr1 107953045 107953111 -134711242 - L2 LINE L2 -17 3255 3191 705 216 36 0 chr1 107953238 107953405 -134710948 - L1MA10 LINE L1 0 6334 6162 734 168 10 32 chr1 107953418 107953704 -134710649 + CT-rich Low_complexity Low_complexity 1 279 0 979 231 23 9 chr1 107953714 107953970 -134710383 - L1MB1 LINE L1 -192 5997 5771 2502 70 0 3 chr1 107953970 107954282 -134710071 - AluY SINE Alu 0 311 1 544 15 0 0 chr1 107954330 107954398 -134709955 - L1PA3 LINE L1 0 6155 6088 221 254 0 0 chr1 107954618 107954681 -134709672 + T-rich Low_complexity Low_complexity 1 63 0 4275 26 10 1 chr1 107954809 107955600 -134708753 - L1PA4 LINE L1 -383 5772 4978 3055 35 5 3 chr1 107955600 107955998 -134708355 + L1PA4 LINE L1 5777 6155 0 227 289 48 12 chr1 107956312 107956395 -134707958 - L2 LINE L2 -188 3084 2999 30 59 0 0 chr1 107956550 107956601 -134707752 + AT_rich Low_complexity Low_complexity 1 51 0 316 305 70 0 chr1 107957803 107957931 -134706422 - MIR SINE MIR -73 189 53 239 196 0 0 chr1 107959262 107959313 -134705040 + L1MC4 LINE L1 6653 6703 -1339 2071 151 20 20 chr1 107959324 107959675 -134704678 - THE1B LTR MaLR 0 364 14 23 33 0 0 chr1 107960017 107960047 -134704306 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 107960483 107960511 -134703842 + AT_rich Low_complexity Low_complexity 1 28 0 238 286 42 42 chr1 107960562 107960681 -134703672 - LTR33 LTR ERVL 0 521 403 185 416 11 0 chr1 107960913 107961002 -134703351 - MIR SINE MIR -89 119 30 335 348 59 32 chr1 107961126 107961313 -134703040 - MIR3 SINE MIR 0 208 17 272 313 17 26 chr1 107961577 107961692 -134702661 + L2 LINE L2 2284 2397 -917 335 254 0 0 chr1 107961716 107961783 -134702570 - L2 LINE L2 -2 3311 3245 829 88 0 0 chr1 107963288 107963401 -134700952 - AluSc SINE Alu -12 297 185 638 143 0 0 chr1 107963402 107963500 -134700853 + AluSc SINE Alu 80 177 -132 204 163 0 0 chr1 107963577 107963620 -134700733 + (CA)n Simple_repeat Simple_repeat 2 44 0 292 252 344 0 chr1 107964131 107964262 -134700091 + MER5A DNA MER1_type 13 188 -1 471 238 144 6 chr1 107964586 107964767 -134699586 - MER5C DNA MER1_type 0 324 119 1253 123 0 0 chr1 107964770 107964949 -134699404 - AluSg/x SINE Alu -5 307 129 430 275 75 0 chr1 107964954 107965074 -134699279 - MER5C DNA MER1_type -195 129 1 1386 203 11 14 chr1 107966333 107966619 -134697734 - AluJo SINE Alu -23 289 5 2474 189 34 22 chr1 107967481 107968072 -134696281 + L1MA7 LINE L1 5693 6290 -1 2093 159 18 18 chr1 107968276 107968665 -134695688 + MLT1B LTR MaLR 1 389 -1 276 304 109 65 chr1 107968839 107968977 -134695376 + L2 LINE L2 3128 3271 -1 810 218 37 17 chr1 107969730 107970035 -134694318 - MLT1A1 LTR MaLR 0 365 1 25 0 0 0 chr1 107970632 107970657 -134693696 + AT_rich Low_complexity Low_complexity 1 25 0 192 362 0 0 chr1 107970703 107970761 -134693592 - L2 LINE L2 -491 2823 2766 195 139 0 0 chr1 107971620 107971656 -134692697 + (TATG)n Simple_repeat Simple_repeat 1 36 0 244 297 0 16 chr1 107971696 107971760 -134692593 + MIR SINE MIR 8 70 -192 438 307 39 20 chr1 107971893 107972046 -134692307 + L2 LINE L2 2425 2580 -734 706 189 8 0 chr1 107972046 107972173 -134692180 - LTR16C LTR ERVL -2 489 362 306 290 75 0 chr1 107972401 107972494 -134691859 + L2 LINE L2 2985 3084 -229 955 198 49 16 chr1 107972764 107973007 -134691346 + L1MC3 LINE L1 7535 7785 0 3879 184 25 7 chr1 107973783 107974854 -134689499 + L1M2 LINE L1 4539 5625 -666 512 287 0 8 chr1 107975130 107975259 -134689094 - MIR SINE MIR -129 133 6 1832 133 3 66 chr1 107975701 107976033 -134688320 - AluSx SINE Alu -1 311 1 708 240 64 60 chr1 107976859 107977092 -134687261 + MIR SINE MIR 23 256 -6 231 238 0 32 chr1 107977117 107977180 -134687173 + CT-rich Low_complexity Low_complexity 3 63 0 183 263 0 0 chr1 107977704 107977742 -134686611 - MIR SINE MIR -2 260 223 33 56 0 0 chr1 107977774 107977828 -134686525 + AT_rich Low_complexity Low_complexity 1 54 0 1824 179 23 40 chr1 107977895 107978291 -134686062 - MLT2C1 LTR ERVL -8 389 1 205 182 0 0 chr1 107978617 107978650 -134685703 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 273 196 0 0 chr1 107978677 107978733 -134685620 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 206 326 41 0 chr1 107978965 107979014 -134685339 - L2 LINE L2 -95 3177 3127 1894 103 0 11 chr1 107980373 107980644 -134683709 - AluSc SINE Alu -7 302 35 2404 182 45 22 chr1 107980832 107981507 -134682846 + L1MB2 LINE L1 5447 6182 -1 30 69 0 0 chr1 107981508 107981566 -134682787 + AT_rich Low_complexity Low_complexity 1 58 0 282 325 135 18 chr1 107981575 107981738 -134682615 + MIR SINE MIR 7 188 -74 1465 215 3 62 chr1 107983610 107983978 -134680375 + MLT1A2 LTR MaLR 29 374 0 28 79 0 0 chr1 107984353 107984416 -134679937 + AT_rich Low_complexity Low_complexity 1 63 0 540 174 0 0 chr1 107984649 107984747 -134679606 - AluSg/x SINE Alu -14 295 198 192 306 0 16 chr1 107985301 107985363 -134678990 + L3b LINE CR1 1280 1340 -243 468 259 72 30 chr1 107986207 107986373 -134677980 - L2 LINE L2 -15 3298 3126 371 331 195 0 chr1 107986653 107986904 -134677449 - L2 LINE L2 -463 2851 2552 204 315 0 0 chr1 107987312 107987366 -134676987 - MER5B DNA MER1_type 0 178 125 393 191 25 106 chr1 107987662 107987861 -134676492 + MER112 DNA MER1_type 1 183 -77 25 0 0 0 chr1 107988340 107988365 -134675988 + AT_rich Low_complexity Low_complexity 1 25 0 2356 75 0 3 chr1 107988453 107988748 -134675605 - AluSc SINE Alu -15 294 1 486 292 86 45 chr1 107988873 107989140 -134675213 + MLT1J LTR MaLR 1 278 -233 246 193 121 12 chr1 107989187 107989270 -134675083 + MLT1J LTR MaLR 418 509 -2 1896 137 19 86 chr1 107990729 107991088 -134673265 - MER1B DNA MER1_type 0 337 3 28 29 0 0 chr1 107991746 107991781 -134672572 + AT_rich Low_complexity Low_complexity 1 35 0 3145 301 89 24 chr1 107992433 107993671 -134670682 + HERV16 LTR ERVL 1688 3005 -1991 521 249 58 40 chr1 107993757 107993930 -134670423 - MIR SINE MIR -29 233 58 22 88 0 0 chr1 107994380 107994437 -134669916 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr1 107996590 107996613 -134667740 + AT_rich Low_complexity Low_complexity 1 23 0 2323 166 14 2 chr1 107996738 107997177 -134667176 - L1PA10 LINE L1 -2997 3149 2706 13597 110 12 26 chr1 107997190 107999056 -134665297 + L1PA10 LINE L1 3139 5031 -1136 2754 13 0 3 chr1 107999056 107999366 -134664987 + AluY SINE Alu 1 309 -2 13597 110 12 26 chr1 107999366 107999690 -134664663 + L1PA10 LINE L1 5031 5358 -809 1728 175 0 0 chr1 107999690 107999970 -134664383 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr1 107999978 108000002 -134664351 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 13597 110 12 26 chr1 108000002 108000848 -134663505 + L1PA10 LINE L1 5365 6167 0 188 103 51 0 chr1 108001349 108001388 -134662965 + A-rich Low_complexity Low_complexity 5 45 0 2299 88 7 0 chr1 108002073 108002379 -134661974 - AluSc SINE Alu -1 308 1 1836 141 40 60 chr1 108003525 108003895 -134660458 - THE1B LTR MaLR -1 363 1 1013 287 51 13 chr1 108005140 108005513 -134658840 - HAL1 LINE L1 -2117 390 4 22 0 0 0 chr1 108005586 108005608 -134658745 + AT_rich Low_complexity Low_complexity 1 22 0 1995 149 3 3 chr1 108005743 108006045 -134658308 - AluSx SINE Alu -10 302 1 32 43 0 0 chr1 108006142 108006188 -134658165 + AT_rich Low_complexity Low_complexity 1 46 0 215 295 53 42 chr1 108007735 108007830 -134656523 + L2 LINE L2 2973 3068 -204 191 298 18 0 chr1 108008930 108008987 -134655366 + MIR SINE MIR 56 113 -95 215 246 0 18 chr1 108010983 108011040 -134653313 - MIR SINE MIR -126 136 81 1812 152 22 4 chr1 108012871 108013186 -134651167 - AluSx SINE Alu 0 320 1 21 0 0 0 chr1 108013760 108013781 -134650572 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 108014483 108014506 -134649847 + AT_rich Low_complexity Low_complexity 1 23 0 2223 94 0 7 chr1 108015301 108015598 -134648755 - AluSc SINE Alu -14 295 1 774 279 64 70 chr1 108017787 108018247 -134646106 + MLT1H LTR MaLR 51 547 -2 213 39 0 0 chr1 108018410 108018436 -134645917 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1362 142 67 12 chr1 108018451 108018691 -134645662 - AluSx SINE Alu -39 273 21 359 252 41 75 chr1 108020791 108020938 -134643415 - MER20B DNA MER1_type -640 143 2 1844 115 90 7 chr1 108021868 108022156 -134642197 - AluSx SINE Alu 0 312 1 235 287 93 62 chr1 108022158 108022287 -134642066 - MIR SINE MIR -16 246 114 2447 168 15 17 chr1 108022324 108022795 -134641558 + L1MC3 LINE L1 7316 7785 0 * 2970 212 39 43 chr1 108022791 108023517 -134640836 + L1MC/D LINE L1 4457 5177 -997 1682 184 0 3 chr1 108023517 108023844 -134640509 - AluJb SINE Alu 0 326 1 2970 212 39 43 chr1 108023844 108024098 -134640255 + L1MC/D LINE L1 5177 5431 -743 1012 229 33 0 chr1 108024203 108024417 -134639936 - L1MC3 LINE L1 -483 7302 7082 472 261 68 23 chr1 108024410 108024674 -134639679 - L1M4 LINE L1 -1686 4460 4185 * 219 232 87 0 chr1 108025647 108025716 -134638637 - MIR SINE MIR -58 204 130 413 252 75 54 chr1 108025763 108025910 -134638443 - MIR SINE MIR -40 222 73 399 21 0 0 chr1 108028827 108028875 -134635478 + (CA)n Simple_repeat Simple_repeat 2 49 0 184 286 95 0 chr1 108028919 108028982 -134635371 + MIR SINE MIR 46 114 -148 480 338 168 28 chr1 108029012 108029619 -134634734 - L2 LINE L2 -267 3046 2353 1514 132 0 0 chr1 108029625 108029845 -134634508 + AluSg/x SINE Alu 83 302 -8 600 141 0 51 chr1 108029852 108030008 -134634345 + (GAAA)n Simple_repeat Simple_repeat 1 148 0 313 45 68 0 chr1 108030008 108030052 -134634301 + GA-rich Low_complexity Low_complexity 5 51 0 1326 340 92 14 chr1 108030055 108030840 -134633513 - L2 LINE L2 -947 2367 1522 838 204 0 13 chr1 108030983 108031140 -134633213 - FAM SINE Alu -13 172 18 198 150 0 0 chr1 108031196 108031236 -134633117 + (A)n Simple_repeat Simple_repeat 1 40 0 900 239 0 63 chr1 108031941 108032179 -134632174 + MER58A DNA MER1_type 1 223 -1 23 68 0 0 chr1 108033232 108033276 -134631077 + AT_rich Low_complexity Low_complexity 1 44 0 243 374 12 0 chr1 108033668 108033834 -134630519 + (TA)n Simple_repeat Simple_repeat 2 169 0 261 268 37 0 chr1 108034802 108034884 -134629469 + (CATA)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr1 108035996 108036018 -134628335 + AT_rich Low_complexity Low_complexity 1 22 0 1861 115 4 0 chr1 108036160 108036430 -134627923 + AluSq SINE Alu 32 302 -11 27 49 0 0 chr1 108036896 108036937 -134627416 + AT_rich Low_complexity Low_complexity 1 41 0 308 184 37 6 chr1 108037367 108037530 -134626823 + (TA)n Simple_repeat Simple_repeat 1 168 0 2215 153 117 16 chr1 108038082 108038225 -134626128 - L1MA6 LINE L1 -1 6299 6172 1730 100 0 0 chr1 108038225 108038464 -134625889 - AluY SINE Alu -3 308 70 2215 153 117 16 chr1 108038464 108038763 -134625590 - L1MA6 LINE L1 -128 6172 5812 207 0 0 0 chr1 108038944 108038967 -134625386 + (T)n Simple_repeat Simple_repeat 1 23 0 204 97 0 0 chr1 108038980 108039011 -134625342 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 936 235 16 0 chr1 108039519 108039706 -134624647 - MER3 DNA MER1_type -19 190 1 1983 41 0 4 chr1 108040618 108040864 -134623489 + L1PA5 LINE L1 5910 6154 0 435 162 121 0 chr1 108042514 108042613 -134621740 - L1MA3 LINE L1 -205 6100 5990 271 161 16 0 chr1 108042613 108042675 -134621678 + L1MA1 LINE L1 6240 6302 0 371 242 25 57 chr1 108042859 108043016 -134621337 - L2 LINE L2 -61 3252 3101 288 320 47 61 chr1 108043158 108043436 -134620917 + HAL1b LINE L1 318 591 -757 1339 187 90 17 chr1 108043982 108044271 -134620082 - HUERS-P2 LTR ERV1 -2557 531 222 448 250 24 32 chr1 108044302 108044426 -134619927 - HUERS-P2 LTR ERV1 -2961 127 5 3578 166 15 60 chr1 108044429 108045251 -134619102 - LTR1 LTR ERV1 0 785 1 270 307 64 21 chr1 108045370 108045510 -134618843 + MIR SINE MIR 100 245 -17 280 374 9 9 chr1 108046301 108046408 -134617945 + L2 LINE L2 3158 3264 -8 22 0 0 0 chr1 108046721 108046743 -134617610 + AT_rich Low_complexity Low_complexity 1 22 0 246 309 11 0 chr1 108047162 108047256 -134617097 - L1ME LINE L1 -471 5691 5597 1146 133 242 32 chr1 108047343 108047591 -134616762 - AluSg SINE Alu 0 300 1 352 293 93 45 chr1 108048527 108048773 -134615580 + L2 LINE L2 2931 3188 -125 1243 245 39 68 chr1 108049803 108050281 -134614072 - MLT1H LTR MaLR -24 525 3 2052 112 20 10 chr1 108051306 108051602 -134612751 - AluSp SINE Alu -14 299 1 249 233 0 17 chr1 108051726 108051786 -134612567 - MLT1-int LTR MaLR -1283 88 30 286 330 10 0 chr1 108052084 108052187 -134612166 - MER94 DNA DNA -2 132 29 687 169 0 25 chr1 108053461 108053621 -134610732 - L1MA4 LINE L1 -1 6299 6144 508 148 69 0 chr1 108053630 108053731 -134610622 + L1MA4 LINE L1 6024 6131 -169 5767 110 20 8 chr1 108053977 108054333 -134610020 - L1PB1 LINE L1 -6 6145 5795 231 88 0 0 chr1 108054333 108054367 -134609986 + (TG)n Simple_repeat Simple_repeat 2 35 0 5767 110 20 8 chr1 108054367 108054891 -134609462 - L1PB1 LINE L1 -356 5795 5254 211 261 0 0 chr1 108055158 108055204 -134609149 + MIR SINE MIR 67 112 -96 * 272 163 0 0 chr1 108055193 108055242 -134609111 - MIR SINE MIR -78 184 136 283 259 35 52 chr1 108055271 108055387 -134608966 + MIR SINE MIR 120 233 -29 * 418 242 32 16 chr1 108055354 108055478 -134608875 + MIR SINE MIR 137 262 0 227 353 67 8 chr1 108055626 108055745 -134608608 + MIR SINE MIR 20 145 -117 431 270 36 0 chr1 108056869 108056980 -134607373 + MIR SINE MIR 148 262 0 568 308 104 64 chr1 108057199 108057773 -134606580 + L2 LINE L2 1243 1845 -1469 1243 225 108 15 chr1 108057773 108058115 -134606238 + MLT1A2 LTR MaLR 1 374 0 568 308 104 64 chr1 108058115 108058163 -134606190 + L2 LINE L2 1845 1890 -1424 570 258 97 65 chr1 108058173 108058452 -134605901 - L2 LINE L2 -95 3218 2931 28 29 0 0 chr1 108058709 108058744 -134605609 + AT_rich Low_complexity Low_complexity 1 35 0 890 259 80 9 chr1 108062111 108062436 -134601917 + L1M4 LINE L1 2481 2828 -3318 810 248 0 10 chr1 108062455 108062661 -134601692 - L1ME LINE L1 -643 5521 5318 4820 232 39 34 chr1 108062674 108064922 -134599431 - L1MC1 LINE L1 -11 6322 4067 32 26 0 0 chr1 108064940 108064979 -134599374 + AT_rich Low_complexity Low_complexity 1 39 0 292 127 15 38 chr1 108064995 108065064 -134599289 - L1ME LINE L1 -550 5616 5555 * 410 169 142 14 chr1 108065056 108065204 -134599149 - L1MC1 LINE L1 -3133 3013 2847 546 298 115 14 chr1 108065204 108065412 -134598941 - L2 LINE L2 -427 2887 2659 245 253 25 63 chr1 108065426 108065505 -134598848 - MER5B DNA MER1_type -1 177 102 432 290 44 71 chr1 108065632 108065815 -134598538 - L2 LINE L2 -690 2624 2447 813 310 93 13 chr1 108065920 108066219 -134598134 - L2 LINE L2 -2505 809 472 2516 59 0 3 chr1 108066219 108066524 -134597829 + AluY SINE Alu 1 304 -7 813 310 93 13 chr1 108066524 108066601 -134597752 - L2 LINE L2 -2842 472 403 184 407 62 17 chr1 108066796 108066973 -134597380 + L2 LINE L2 2521 2705 -609 213 318 45 0 chr1 108067526 108067592 -134596761 + L2 LINE L2 3190 3258 -14 24 32 0 0 chr1 108068084 108068115 -134596238 + AT_rich Low_complexity Low_complexity 1 31 0 235 304 108 0 chr1 108068418 108068520 -134595833 + L2 LINE L2 3141 3253 -19 24 0 0 0 chr1 108069308 108069332 -134595021 + AT_rich Low_complexity Low_complexity 1 24 0 757 222 185 21 chr1 108069758 108069947 -134594406 - MER8 DNA MER2_type -17 222 3 276 149 0 0 chr1 108070314 108070361 -134593992 + (TA)n Simple_repeat Simple_repeat 2 48 0 257 226 0 43 chr1 108070370 108070463 -134593890 - L1MC4 LINE L1 -1339 6703 6615 288 0 0 0 chr1 108070464 108070496 -134593857 + (TG)n Simple_repeat Simple_repeat 2 33 0 * 315 0 0 0 chr1 108070495 108070530 -134593823 + (TA)n Simple_repeat Simple_repeat 2 36 0 1167 178 87 45 chr1 108070530 108070807 -134593546 + AluJo SINE Alu 1 292 -10 1910 126 28 0 chr1 108070807 108071093 -134593260 - AluSx SINE Alu -18 294 1 430 242 8 25 chr1 108071321 108071441 -134592912 - MIR SINE MIR -13 249 132 292 258 0 0 chr1 108071441 108071503 -134592850 - MIR SINE MIR -89 173 112 364 244 82 30 chr1 108072863 108072998 -134591355 - L2 LINE L2 -1 3312 3171 290 333 0 0 chr1 108073100 108073184 -134591169 + L2 LINE L2 3230 3313 0 2418 213 8 4 chr1 108073327 108073797 -134590556 + MER70A LTR ERVL 1 472 0 756 251 65 0 chr1 108073945 108074144 -134590209 + MIR SINE MIR 48 259 -3 239 260 202 0 chr1 108074236 108074340 -134590013 + MIR SINE MIR 133 257 -5 280 325 31 55 chr1 108075073 108075236 -134589117 + L2 LINE L2 2901 3059 -213 372 315 221 17 chr1 108075354 108075703 -134588650 - L2 LINE L2 0 3272 2853 200 250 0 0 chr1 108075754 108075794 -134588559 + L2 LINE L2 3233 3272 0 296 321 38 61 chr1 108076421 108076552 -134587801 + MIR3 SINE MIR 55 182 -26 312 340 154 0 chr1 108077116 108077272 -134587081 + MIR SINE MIR 32 211 -51 214 397 0 0 chr1 108078023 108078101 -134586252 - L2 LINE L2 -4 3268 3191 893 210 84 65 chr1 108078592 108078902 -134585451 - MER2 DNA MER2_type 0 345 30 366 276 18 84 chr1 108079654 108079754 -134584599 + L1MEc LINE L1 1127 1205 -5358 3720 162 37 9 chr1 108079754 108080434 -134583919 + L1PA15 LINE L1 5467 6165 0 366 276 18 84 chr1 108080434 108080558 -134583795 + L1MEc LINE L1 1205 1336 -5227 462 302 77 25 chr1 108081070 108081305 -134583048 + MIR SINE MIR 6 252 -10 369 350 28 21 chr1 108081423 108081566 -134582787 + L2 LINE L2 3125 3268 -4 186 355 118 9 chr1 108081781 108081891 -134582462 + L2 LINE L2 3183 3304 -9 23 33 0 0 chr1 108082703 108082733 -134581620 + AT_rich Low_complexity Low_complexity 1 30 0 217 257 0 14 chr1 108083679 108083749 -134580604 + (TA)n Simple_repeat Simple_repeat 2 70 0 189 213 0 0 chr1 108084055 108084102 -134580251 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 2506 56 0 3 chr1 108084517 108084819 -134579534 + AluY SINE Alu 8 308 -3 319 276 315 4 chr1 108085960 108086192 -134578161 + L2 LINE L2 2195 2498 -816 1626 212 103 60 chr1 108086193 108086901 -134577452 + MER97b DNA MER1_type? 40 893 -1 512 268 35 61 chr1 108086922 108087120 -134577233 + L2 LINE L2 3120 3312 -1 2180 126 7 0 chr1 108087349 108087659 -134576694 + AluSx SINE Alu 1 312 0 340 299 40 40 chr1 108087845 108088019 -134576334 - L2 LINE L2 -1005 2309 2136 196 184 0 26 chr1 108090595 108090633 -134573720 + L2 LINE L2 3269 3305 -8 23 0 0 0 chr1 108091448 108091471 -134572882 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr1 108091551 108091587 -134572766 + AT_rich Low_complexity Low_complexity 1 36 0 589 224 238 11 chr1 108091611 108091804 -134572549 + L1MEc LINE L1 2332 2480 -3902 217 50 25 25 chr1 108091804 108091844 -134572509 + (TA)n Simple_repeat Simple_repeat 1 40 0 589 224 238 11 chr1 108091844 108092001 -134572352 + L1MEc LINE L1 2480 2761 -3621 22 56 0 0 chr1 108092932 108092968 -134571385 + AT_rich Low_complexity Low_complexity 1 36 0 40 49 0 0 chr1 108092996 108093057 -134571296 + AT_rich Low_complexity Low_complexity 1 61 0 27 29 0 0 chr1 108093578 108093612 -134570741 + AT_rich Low_complexity Low_complexity 1 34 0 647 291 42 25 chr1 108094036 108094273 -134570080 + MIR SINE MIR 1 241 -21 710 168 120 18 chr1 108094335 108094502 -134569851 - MER3 DNA MER1_type -6 203 20 845 227 63 0 chr1 108094507 108094745 -134569608 + MER63 DNA MER1_type 808 1060 0 21 0 0 0 chr1 108095482 108095503 -134568850 + AT_rich Low_complexity Low_complexity 1 21 0 308 265 110 44 chr1 108095713 108095849 -134568504 - MIR SINE MIR 0 262 118 7321 22 9 1 chr1 108095908 108096776 -134567577 - L1PA4 LINE L1 0 6155 5281 22 0 0 0 chr1 108096899 108096921 -134567432 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 108096983 108097004 -134567349 + AT_rich Low_complexity Low_complexity 1 21 0 3339 170 40 30 chr1 108097119 108097810 -134566543 - L1MC1 LINE L1 -100 6233 5463 1069 165 97 91 chr1 108097818 108098073 -134566280 + MLT1A1 LTR MaLR 9 268 -97 2642 16 0 0 chr1 108098073 108098378 -134565975 - L1PA2 LINE L1 -5 6150 5846 1069 165 97 91 chr1 108098378 108098474 -134565879 + MLT1A1 LTR MaLR 268 362 -3 2298 205 26 36 chr1 108098474 108098789 -134565564 - L1MC1 LINE L1 -752 5394 5077 613 198 25 8 chr1 108098789 108098910 -134565443 - FLAM_A SINE Alu -10 123 1 2298 205 26 36 chr1 108098910 108099321 -134565032 - L1MC1 LINE L1 -1069 5077 4756 249 33 0 0 chr1 108099909 108099939 -134564414 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 282 29 0 0 chr1 108099938 108099973 -134564380 + (CA)n Simple_repeat Simple_repeat 1 35 0 1779 173 27 0 chr1 108101993 108102328 -134562025 + L1MC3 LINE L1 7423 7766 -19 234 91 0 0 chr1 108102689 108102722 -134561631 + (CA)n Simple_repeat Simple_repeat 2 34 0 339 246 22 8 chr1 108102986 108103120 -134561233 - LTR37B LTR ERV1 0 468 333 1267 209 74 20 chr1 108103126 108103477 -134560876 + L1M4 LINE L1 3530 4100 -2046 1145 262 78 62 chr1 108103477 108103548 -134560805 - MLT2B1 LTR ERVL 0 520 452 528 16 0 0 chr1 108103548 108103609 -134560744 + (TG)n Simple_repeat Simple_repeat 1 61 0 1145 262 78 62 chr1 108103609 108104049 -134560304 - MLT2B1 LTR ERVL -68 452 1 1267 209 74 20 chr1 108104049 108104143 -134560210 + L1M4 LINE L1 4100 4188 -1958 369 162 0 0 chr1 108104144 108104212 -134560141 + GA-rich Low_complexity Low_complexity 2 69 0 3111 226 31 12 chr1 108104212 108105054 -134559299 + L1M4 LINE L1 4152 5009 -1137 627 216 32 42 chr1 108105052 108105242 -134559111 + L1MB8 LINE L1 5986 6173 -5 * 748 245 30 87 chr1 108105242 108105610 -134558743 - LTR37B LTR ERV1 -116 352 6 402 313 45 0 chr1 108105920 108106099 -134558254 - L1M4 LINE L1 -1219 4927 4741 701 301 87 55 chr1 108106354 108107053 -134557300 + L1MEd LINE L1 162 837 -5473 2043 82 0 41 chr1 108107053 108107344 -134557009 + AluY SINE Alu 1 279 -32 411 38 0 0 chr1 108107344 108107397 -134556956 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 701 301 87 55 chr1 108107397 108108056 -134556297 + L1MEd LINE L1 836 1592 -4718 411 56 0 0 chr1 108108492 108108546 -134555807 + (TG)n Simple_repeat Simple_repeat 2 55 0 326 287 120 5 chr1 108108549 108108765 -134555588 - L1MB8 LINE L1 -10 6168 5928 180 0 0 0 chr1 108108830 108108850 -134555503 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 192 40 0 0 chr1 108109363 108109388 -134554965 + (TG)n Simple_repeat Simple_repeat 2 26 0 219 167 0 0 chr1 108109420 108109462 -134554891 + (CATA)n Simple_repeat Simple_repeat 1 42 0 245 281 0 0 chr1 108112568 108112625 -134551728 + CT-rich Low_complexity Low_complexity 2 58 0 284 240 177 0 chr1 108112911 108113007 -134551346 + LTR16A LTR ERVL 325 437 -13 281 306 108 19 chr1 108113018 108113175 -134551178 - MER5B DNA MER1_type -5 173 3 269 328 50 116 chr1 108113279 108113761 -134550592 - L2 LINE L2 0 3272 2823 434 291 7 28 chr1 108114708 108114849 -134549504 + G-rich Low_complexity Low_complexity 4 141 0 410 285 30 30 chr1 108114782 108114947 -134549406 + GA-rich Low_complexity Low_complexity 5 169 0 * 205 204 23 0 chr1 108115267 108115311 -134549042 + (TATG)n Simple_repeat Simple_repeat 1 45 0 439 335 77 0 chr1 108115392 108115562 -134548791 + MIR SINE MIR 3 185 -77 2101 106 0 13 chr1 108115963 108116266 -134548087 + AluSg SINE Alu 1 299 -11 22 56 0 0 chr1 108116491 108116527 -134547826 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 108118538 108118561 -134545792 + AT_rich Low_complexity Low_complexity 1 23 0 209 271 17 17 chr1 108119088 108119147 -134545206 - L2 LINE L2 -62 3251 3193 214 260 0 0 chr1 108119378 108119428 -134544925 + (CA)n Simple_repeat Simple_repeat 2 51 0 30 27 0 0 chr1 108119719 108119756 -134544597 + AT_rich Low_complexity Low_complexity 1 37 0 1839 155 0 7 chr1 108120431 108120722 -134543631 - AluSx SINE Alu -23 289 1 24 0 0 0 chr1 108120815 108120839 -134543514 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr1 108121571 108121601 -134542752 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 108222766 108222787 -134441566 + AT_rich Low_complexity Low_complexity 1 21 0 303 323 67 36 chr1 108223598 108223793 -134440560 + L2 LINE L2 1905 2105 -1209 2217 120 0 0 chr1 108223874 108224182 -134440171 + AluSg SINE Alu 1 308 -2 225 0 0 0 chr1 108224999 108225024 -134439329 + (CA)n Simple_repeat Simple_repeat 2 26 0 459 301 43 39 chr1 108225165 108225421 -134438932 + L2 LINE L2 2824 3080 -192 402 278 49 35 chr1 108225516 108225660 -134438693 - MIR SINE MIR 0 262 117 1074 153 25 0 chr1 108226056 108226252 -134438101 + L1MA5 LINE L1 6095 6295 -5 1203 249 37 37 chr1 108226739 108227065 -134437288 + MER102b DNA MER1_type 1 326 -15 207 69 0 0 chr1 108227155 108227184 -134437169 + (A)n Simple_repeat Simple_repeat 1 29 0 2216 155 11 35 chr1 108228943 108228989 -134435364 + L1MB1 LINE L1 5445 5491 -677 1885 154 0 3 chr1 108228989 108229282 -134435071 + AluJb SINE Alu 1 292 -20 2216 155 11 35 chr1 108229282 108229294 -134435059 + L1MB1 LINE L1 5491 5502 -666 207 0 0 0 chr1 108229294 108229317 -134435036 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2216 155 11 35 chr1 108229317 108229690 -134434663 + L1MB1 LINE L1 5502 5867 -301 833 148 32 0 chr1 108229718 108229873 -134434480 + L1MB1 LINE L1 6008 6167 -1 2227 115 0 3 chr1 108231174 108231536 -134432817 + AluSx SINE Alu 1 361 0 433 257 173 26 chr1 108231810 108232036 -134432317 + MIR SINE MIR 2 260 -2 2127 111 0 10 chr1 108232538 108232835 -134431518 - AluSx SINE Alu -18 294 1 23 33 0 0 chr1 108234794 108234824 -134429529 + AT_rich Low_complexity Low_complexity 1 30 0 538 299 74 22 chr1 108235381 108235823 -134428530 - L1ME4a LINE L1 -262 5859 5396 325 303 61 30 chr1 108237292 108237424 -134426929 + L3b LINE CR1 1312 1447 -136 729 291 33 70 chr1 108237940 108238270 -134426083 - L1ME LINE L1 -377 5793 5476 611 270 98 20 chr1 108239678 108239910 -134424443 - MIR SINE MIR -14 248 3 1381 149 0 9 chr1 108240184 108240399 -134423954 - AluJo SINE Alu -14 298 86 531 226 10 0 chr1 108240546 108240648 -134423705 + L2 LINE L2 3210 3312 -1 224 226 16 48 chr1 108240817 108240879 -134423474 - L3 LINE CR1 -2 1575 1516 182 351 68 0 chr1 108241187 108241261 -134423092 - L2 LINE L2 -1 3312 3234 196 391 38 5 chr1 108241340 108241524 -134422829 - L2 LINE L2 -558 2756 2567 296 358 73 33 chr1 108241667 108241818 -134422535 - L2 LINE L2 0 3272 3116 21 0 0 0 chr1 108242079 108242100 -134422253 + AT_rich Low_complexity Low_complexity 1 21 0 221 362 112 0 chr1 108242811 108242927 -134421426 + L2 LINE L2 3142 3270 -2 189 103 0 52 chr1 108243079 108243137 -134421216 + (TAAAAA)n Simple_repeat Simple_repeat 4 58 0 785 205 13 13 chr1 108245707 108245863 -134418490 + FRAM SINE Alu 1 156 -20 21 57 0 0 chr1 108247291 108247326 -134417027 + AT_rich Low_complexity Low_complexity 1 35 0 286 270 73 58 chr1 108247938 108248075 -134416278 + L2 LINE L2 3168 3306 -7 1462 181 44 4 chr1 108248878 108249185 -134415168 + AluSx SINE Alu 1 318 0 265 324 86 50 chr1 108250162 108250301 -134414052 - MER5A DNA MER1_type -45 144 1 280 321 71 9 chr1 108250372 108250484 -134413869 - L2 LINE L2 -1 3271 3153 399 244 68 51 chr1 108250640 108250874 -134413479 + L1MEd LINE L1 972 1209 -4910 367 285 116 33 chr1 108250901 108251260 -134413093 + L1M2 LINE L1 2087 2464 -745 363 210 0 0 chr1 108252201 108252263 -134412090 + AluS SINE Alu 1 62 -241 290 333 109 7 chr1 108252986 108253124 -134411229 - MIR3 SINE MIR -50 158 7 287 254 58 51 chr1 108253125 108253263 -134411090 + MIR SINE MIR 110 248 -14 246 247 37 12 chr1 108254115 108254196 -134410157 + MIR3 SINE MIR 111 193 -15 26 50 0 0 chr1 108255241 108255281 -134409072 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr1 108255331 108255356 -134408997 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr1 108255394 108255439 -134408914 + AT_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr1 108255491 108255529 -134408824 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 108255711 108255735 -134408618 + AT_rich Low_complexity Low_complexity 1 24 0 31 76 0 0 chr1 108256810 108256876 -134407477 + AT_rich Low_complexity Low_complexity 1 66 0 363 204 92 0 chr1 108258279 108258377 -134405976 - LTR9B LTR ERV1 -93 551 445 402 21 0 0 chr1 108259108 108259155 -134405198 + (CA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr1 108259278 108259303 -134405050 + AT_rich Low_complexity Low_complexity 1 25 0 665 228 99 0 chr1 108259618 108259789 -134404564 - MER5A DNA MER1_type 0 189 2 279 245 106 21 chr1 108260373 108260467 -134403886 + L2 LINE L2 3196 3297 -16 22 0 0 0 chr1 108260779 108260801 -134403552 + AT_rich Low_complexity Low_complexity 1 22 0 1055 69 7 0 chr1 108261340 108261485 -134402868 + (GAAA)n Simple_repeat Simple_repeat 4 149 0 220 234 0 0 chr1 108261491 108261538 -134402815 + A-rich Low_complexity Low_complexity 1 47 0 1881 184 9 9 chr1 108263908 108264251 -134400102 + MER7A DNA MER2_type 2 342 -4 23 33 0 0 chr1 108264518 108264548 -134399805 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 108266436 108266459 -134397894 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr1 108266855 108266901 -134397452 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr1 108267173 108267208 -134397145 + AT_rich Low_complexity Low_complexity 1 35 0 283 173 58 0 chr1 108267245 108267297 -134397056 - L2 LINE L2 -8 3305 3251 245 376 106 6 chr1 108267910 108268080 -134396273 - MIR3 SINE MIR -5 203 17 315 0 0 0 chr1 108268391 108268426 -134395927 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr1 108272462 108272489 -134391864 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 384 200 0 0 chr1 108273512 108273592 -134390761 + (CTG)n Simple_repeat Simple_repeat 3 82 0 23 0 0 0 chr1 108274932 108274955 -134389398 + AT_rich Low_complexity Low_complexity 1 23 0 441 0 0 0 chr1 108275476 108275525 -134388828 + (CA)n Simple_repeat Simple_repeat 1 49 0 350 204 11 0 chr1 108276402 108276490 -134387863 + CT-rich Low_complexity Low_complexity 1 89 0 198 0 0 0 chr1 108280470 108280492 -134383861 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 522 43 0 0 chr1 108280491 108280560 -134383793 + (GA)n Simple_repeat Simple_repeat 1 69 0 264 122 0 0 chr1 108282023 108282064 -134382289 + (CA)n Simple_repeat Simple_repeat 1 41 0 723 284 9 18 chr1 108283045 108283267 -134381086 - MIR SINE MIR 0 262 43 198 320 141 16 chr1 108283453 108283581 -134380772 - MIR3 SINE MIR -61 147 4 587 271 8 26 chr1 108284542 108284724 -134379629 - MIR3 SINE MIR -11 197 24 296 244 76 92 chr1 108284771 108284902 -134379451 - L2 LINE L2 -2 3311 3183 291 311 147 34 chr1 108289073 108289250 -134375103 - MIR SINE MIR -18 244 48 256 264 0 0 chr1 108289308 108289361 -134374992 - MIR SINE MIR -12 250 198 207 154 0 0 chr1 108289670 108289695 -134374658 + (TTCA)n Simple_repeat Simple_repeat 3 30 -11 2279 107 0 0 chr1 108289695 108289993 -134374360 - AluSc SINE Alu -11 298 1 207 154 0 0 chr1 108289993 108290006 -134374347 + (TTCA)n Simple_repeat Simple_repeat 29 41 0 192 302 38 0 chr1 108290356 108290409 -134373944 + L2 LINE L2 3246 3300 -13 243 0 0 0 chr1 108290409 108290436 -134373917 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2158 96 0 24 chr1 108291405 108291731 -134372622 - AluSx SINE Alu 0 319 1 216 182 0 0 chr1 108292252 108292296 -134372057 + A-rich Low_complexity Low_complexity 4 47 0 251 268 52 10 chr1 108292838 108292935 -134371418 - L1MC4a LINE L1 -1 7807 7707 279 0 0 0 chr1 108292987 108293018 -134371335 + (TG)n Simple_repeat Simple_repeat 2 32 0 333 294 39 90 chr1 108293120 108293477 -134370876 - HAL1 LINE L1 -1160 1347 1009 2253 72 7 10 chr1 108294622 108294914 -134369439 - AluSg SINE Alu -19 291 1 23 0 0 0 chr1 108296092 108296115 -134368238 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chr1 108296599 108296634 -134367719 + (CA)n Simple_repeat Simple_repeat 1 35 0 292 133 0 50 chr1 108297262 108297322 -134367031 + L2 LINE L2 3257 3313 0 24 32 0 0 chr1 108298828 108298859 -134365494 + AT_rich Low_complexity Low_complexity 1 31 0 266 248 82 68 chr1 108298923 108299129 -134365224 - L2 LINE L2 -55 3258 3050 186 218 73 0 chr1 108299626 108299681 -134364672 - MIR SINE MIR -97 165 107 219 218 58 23 chr1 108299992 108300079 -134364274 - MIR SINE MIR -103 159 70 386 246 14 63 chr1 108303007 108303149 -134361204 - MIR SINE MIR -55 207 73 249 26 0 0 chr1 108303834 108303872 -134360481 + L1PA3 LINE L1 6118 6155 0 341 384 18 24 chr1 108303872 108304036 -134360317 - MIR3 SINE MIR -43 165 3 288 172 0 12 chr1 108304048 108304118 -134360235 - MLT1H LTR MaLR 0 542 483 22 0 0 0 chr1 108305055 108305077 -134359276 + AT_rich Low_complexity Low_complexity 1 22 0 610 309 86 44 chr1 108305132 108305517 -134358836 - MLT1H LTR MaLR -103 446 46 312 27 0 0 chr1 108305785 108305836 -134358517 + (TG)n Simple_repeat Simple_repeat 1 88 0 312 27 0 0 chr1 108305836 108305873 -134358480 + (TG)n Simple_repeat Simple_repeat 2 38 0 420 271 18 72 chr1 108306291 108306457 -134357896 - MIR SINE MIR -47 215 59 269 198 0 119 chr1 108306900 108307001 -134357352 + MER104 DNA Tc2 10 98 -82 540 252 8 0 chr1 108307043 108307162 -134357191 - MIR SINE MIR -103 159 40 211 271 0 0 chr1 108307945 108307993 -134356360 + (CA)n Simple_repeat Simple_repeat 1 48 0 2723 129 35 7 chr1 108308262 108308696 -134355657 - Tigger2 DNA MER2_type 0 2718 2273 292 197 45 30 chr1 108308686 108308752 -134355601 - Tigger2 DNA MER2_type -2649 69 3 * 566 246 45 17 chr1 108308753 108308932 -134355421 - L1MC/D LINE L1 -1997 5811 5628 365 247 0 11 chr1 108308962 108309051 -134355302 - L1MC/D LINE L1 -2287 5521 5434 297 329 112 3 chr1 108309356 108309651 -134354702 - L1MC/D LINE L1 -1071 5075 4749 1038 167 60 18 chr1 108309663 108309945 -134354408 + MER33 DNA MER1_type 31 324 0 464 287 97 31 chr1 108310038 108310585 -134353768 - L1MC/D LINE L1 -1487 4659 4077 239 203 17 0 chr1 108310656 108310715 -134353638 + (CA)n Simple_repeat Simple_repeat 2 61 0 242 204 129 0 chr1 108310768 108310861 -134353492 - L1MC/D LINE L1 -2201 3945 3841 26 0 0 0 chr1 108311476 108311502 -134352851 + AT_rich Low_complexity Low_complexity 1 26 0 629 342 91 44 chr1 108312101 108312627 -134351726 + L2 LINE L2 2310 2860 -454 309 217 87 61 chr1 108313187 108313302 -134351051 + MER5B DNA MER1_type 17 134 -44 1556 151 25 32 chr1 108313516 108313794 -134350559 + AluJb SINE Alu 30 305 -7 240 245 32 11 chr1 108313816 108313910 -134350443 - L1MC4 LINE L1 -1333 6709 6614 397 156 52 7 chr1 108313915 108314050 -134350303 + (TA)n Simple_repeat Simple_repeat 1 141 0 307 374 29 0 chr1 108314170 108314309 -134350044 + L2 LINE L2 3167 3309 -4 249 274 53 68 chr1 108314795 108314985 -134349368 - L2 LINE L2 -1596 1718 1532 239 272 81 23 chr1 108316192 108316365 -134347988 - L1ME LINE L1 -249 5872 5690 364 273 87 27 chr1 108316391 108316541 -134347812 + MIR SINE MIR 31 189 -73 283 349 0 0 chr1 108316554 108316640 -134347713 - L2 LINE L2 -3 3310 3225 * 368 284 105 19 chr1 108316629 108316791 -134347562 - L2 LINE L2 -1158 2156 1981 876 269 25 49 chr1 108316841 108317165 -134347188 + L1MC4a LINE L1 5566 5881 -1927 1784 118 56 52 chr1 108317266 108317554 -134346799 + AluSg1 SINE Alu 1 289 -20 415 188 24 0 chr1 108317604 108317689 -134346664 - L2 LINE L2 -1316 1998 1912 369 238 59 79 chr1 108317708 108317910 -134346443 - L2 LINE L2 -1522 1792 1595 233 253 42 42 chr1 108318118 108318213 -134346140 - MIR SINE MIR -45 217 123 350 403 8 0 chr1 108318276 108318405 -134345948 - L2 LINE L2 -6 3266 3137 2005 184 9 11 chr1 108318520 108318883 -134345470 + MSTD LTR MaLR 3 341 -34 38 39 0 0 chr1 108318963 108319015 -134345338 + AT_rich Low_complexity Low_complexity 1 52 0 1817 172 0 7 chr1 108319257 108319559 -134344794 - AluSx SINE Alu -12 300 1 313 358 71 25 chr1 108320368 108320608 -134343745 + L2 LINE L2 2950 3200 -72 2039 147 0 13 chr1 108320655 108320968 -134343385 + AluSx SINE Alu 4 312 0 619 169 16 16 chr1 108320974 108321098 -134343255 + FLAM_A SINE Alu 1 124 -9 1767 205 74 0 chr1 108323036 108323402 -134340951 - MSTD LTR MaLR -3 393 1 2183 123 7 3 chr1 108323559 108323868 -134340485 - AluSq SINE Alu -3 310 1 1702 170 3 7 chr1 108323868 108324149 -134340204 - AluSx SINE Alu -18 294 14 431 250 45 55 chr1 108324220 108324440 -134339913 + L1MA9 LINE L1 6015 6232 -80 183 306 20 0 chr1 108324729 108324778 -134339575 + L2 LINE L2 3210 3259 -13 198 0 0 0 chr1 108324778 108324800 -134339553 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 182 37 37 0 chr1 108325274 108325301 -134339052 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 406 307 22 15 chr1 108326348 108326485 -134337868 - MIR SINE MIR -123 139 2 299 225 101 54 chr1 108327511 108327640 -134336713 + MIR3 SINE MIR 12 146 -62 304 317 16 57 chr1 108328315 108328438 -134335915 + MIR SINE MIR 22 139 -123 265 353 115 0 chr1 108328454 108328576 -134335777 - L2 LINE L2 0 3272 3137 638 311 62 12 chr1 108328794 108329038 -134335315 - MIR SINE MIR -3 259 4 250 250 79 26 chr1 108330784 108330860 -134333493 + L2 LINE L2 3186 3265 -7 189 211 39 19 chr1 108331321 108331373 -134332980 - L2 LINE L2 -214 3058 3006 593 355 93 31 chr1 108332415 108332897 -134331456 + L3 LINE CR1 353 864 -713 334 320 0 57 chr1 108332981 108333103 -134331250 + LTR67 LTR ERVL 102 216 -341 245 278 52 41 chr1 108334315 108334412 -134329941 - L3 LINE CR1 -116 1461 1364 194 414 154 3 chr1 108334712 108334997 -134329356 + L2 LINE L2 2942 3269 -3 336 324 89 40 chr1 108335008 108335233 -134329120 - L3 LINE CR1 -478 1099 864 407 317 93 18 chr1 108335352 108335686 -134328667 - L2 LINE L2 -1137 2177 1819 4640 25 2 4 chr1 108335970 108336626 -134327727 - L1P1 LINE L1 -680 5475 4821 6095 25 0 6 chr1 108336626 108337343 -134327010 + L1PA2 LINE L1 5437 6154 -1 211 267 19 57 chr1 108337382 108337487 -134326866 - L2 LINE L2 -1860 1454 1354 523 348 64 13 chr1 108338838 108339074 -134325279 - MIR SINE MIR -2 260 13 2000 120 0 52 chr1 108339649 108339974 -134324379 + AluSq SINE Alu 1 308 -5 33 0 0 0 chr1 108339974 108340007 -134324346 + AT_rich Low_complexity Low_complexity 1 33 0 404 309 1 0 chr1 108340190 108340315 -134324038 + MIR SINE MIR 15 140 -68 956 169 60 96 chr1 108340760 108341074 -134323279 + MER33 DNA MER1_type 22 324 0 292 326 31 31 chr1 108341561 108341690 -134322663 - MIR SINE MIR -123 139 11 459 261 58 0 chr1 108342204 108342342 -134322011 + MIR SINE MIR 117 262 0 245 256 89 33 chr1 108345080 108345170 -134319183 + MIR SINE MIR 49 143 -119 2109 104 0 0 chr1 108345397 108345675 -134318678 + AluSg SINE Alu 10 287 -23 36 40 0 0 chr1 108347443 108347493 -134316860 + AT_rich Low_complexity Low_complexity 1 50 0 212 356 11 0 chr1 108348110 108348197 -134316156 + MIR3 SINE MIR 108 195 -13 203 152 0 0 chr1 108348412 108348445 -134315908 + (TG)n Simple_repeat Simple_repeat 2 34 0 233 347 10 31 chr1 108349770 108349868 -134314485 - L2 LINE L2 -173 3099 3004 285 170 0 0 chr1 108349925 108349978 -134314375 + L2 LINE L2 3261 3313 0 2112 137 73 15 chr1 108351176 108351518 -134312835 + THE1B LTR MaLR 1 362 -2 32 26 0 0 chr1 108351786 108351825 -134312528 + AT_rich Low_complexity Low_complexity 1 39 0 220 274 97 53 chr1 108352020 108352133 -134312220 + L3 LINE CR1 1186 1303 -274 340 344 48 16 chr1 108352223 108352409 -134311944 + L3 LINE CR1 1312 1503 -74 407 104 0 15 chr1 108352454 108352521 -134311832 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 2051 157 0 0 chr1 108352527 108352839 -134311514 - AluSx SINE Alu 0 312 1 199 224 119 15 chr1 108352841 108352908 -134311445 + MIR SINE MIR 109 182 -80 * 256 304 22 22 chr1 108352883 108352975 -134311378 - MIR SINE MIR -168 94 3 801 254 101 4 chr1 108353109 108353337 -134311016 + MIR SINE MIR 12 261 -1 185 365 0 19 chr1 108353419 108353471 -134310882 - L2 LINE L2 -99 3173 3123 282 29 0 0 chr1 108356563 108356598 -134307755 + (CA)n Simple_repeat Simple_repeat 2 36 0 380 347 126 9 chr1 108357586 108357920 -134306433 + L3 LINE CR1 252 624 -953 447 191 9 48 chr1 108358972 108359077 -134305276 + L2 LINE L2 3168 3268 -4 366 302 54 63 chr1 108359185 108359390 -134304963 - MIR SINE MIR -29 233 31 218 304 59 10 chr1 108359486 108359588 -134304765 - MIR3 SINE MIR -9 199 93 213 330 154 0 chr1 108359837 108359928 -134304425 + L3 LINE CR1 1449 1553 -24 189 234 21 0 chr1 108359897 108359944 -134304409 + MIR3 SINE MIR 150 197 -11 * 259 386 87 8 chr1 108360035 108360162 -134304191 + L2 LINE L2 3126 3262 -10 419 91 0 15 chr1 108361125 108361191 -134303162 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 1556 127 24 8 chr1 108361438 108361691 -134302662 - Tigger2 DNA MER2_type -10 2708 2452 330 194 16 0 chr1 108361752 108361814 -134302539 - Tigger2 DNA MER2_type -1967 751 689 3232 152 23 5 chr1 108361835 108362394 -134301959 - Tigger2 DNA MER2_type -2146 572 4 608 245 117 11 chr1 108363635 108363823 -134300530 + MER58B DNA MER1_type 9 216 -125 410 212 76 34 chr1 108363883 108364001 -134300352 + MER58B DNA MER1_type 219 341 0 186 189 0 0 chr1 108364174 108364211 -134300142 + CT-rich Low_complexity Low_complexity 4 40 0 304 260 20 20 chr1 108365214 108365314 -134299039 + (TAAA)n Simple_repeat Simple_repeat 4 103 0 260 323 0 0 chr1 108365329 108365428 -134298925 - Charlie7 DNA MER1_type -1026 1586 1488 272 325 96 16 chr1 108365508 108365639 -134298714 - Charlie7 DNA MER1_type -2403 209 57 1354 190 27 4 chr1 108365639 108365902 -134298451 - L1PB4 LINE L1 0 6156 5888 272 325 96 16 chr1 108365902 108365958 -134298395 - Charlie7 DNA MER1_type -2555 57 7 1354 176 55 17 chr1 108366424 108366713 -134297640 - L1PA16 LINE L1 0 6166 5867 2903 6 0 0 chr1 108367100 108367418 -134296935 - AluYb8 SINE Alu 0 318 1 763 261 31 10 chr1 108372172 108372367 -134291986 - MIR SINE MIR -63 199 1 7613 182 43 58 chr1 108373050 108374928 -134289425 + L1MC3 LINE L1 5270 7119 -666 1740 189 33 9 chr1 108374928 108375262 -134289091 + MLT2C1 LTR ERVL 1 342 -55 1141 224 9 5 chr1 108375337 108375560 -134288793 + MER8 DNA MER2_type 16 239 0 254 231 13 13 chr1 108375609 108375687 -134288666 + (TA)n Simple_repeat Simple_repeat 1 78 0 344 93 0 20 chr1 108375689 108375747 -134288606 + MLT2C1 LTR ERVL 350 397 0 2991 188 50 26 chr1 108375748 108376302 -134288051 + L1MC3 LINE L1 7116 7690 -95 2627 147 9 9 chr1 108376302 108376764 -134287589 + L1PB3 LINE L1 5686 6147 -7 2991 188 50 26 chr1 108376764 108376863 -134287490 + L1MC3 LINE L1 7690 7785 0 489 200 59 42 chr1 108377392 108377590 -134286763 - L1MDa LINE L1 -3934 2606 2442 2051 164 66 17 chr1 108377711 108378119 -134286234 - MSTA LTR MaLR 0 428 1 1407 257 99 83 chr1 108378328 108379561 -134284792 - L1MDa LINE L1 -4482 2239 987 5299 99 46 19 chr1 108379820 108380644 -134283709 - L1PA13 LINE L1 -1 6162 5317 7442 35 0 0 chr1 108380666 108381812 -134282541 - L1PA4 LINE L1 -3 6152 5007 3781 27 0 0 chr1 108381808 108382253 -134282100 + L1PA4 LINE L1 4566 5010 -1136 1668 161 16 0 chr1 108382255 108382565 -134281788 - L1PA13 LINE L1 -818 5328 5014 * 9997 161 11 9 chr1 108382563 108384359 -134279994 + L1PA13 LINE L1 3246 5044 -1102 381 293 92 35 chr1 108385894 108386068 -134278285 + MIR SINE MIR 54 237 -25 4855 40 20 0 chr1 108387937 108388541 -134275812 + L1PA5 LINE L1 3559 4174 -1972 7073 51 14 0 chr1 108388541 108389884 -134274469 + L1PA5 LINE L1 4799 6153 -1 221 278 97 0 chr1 108390586 108390658 -134273695 + MIR SINE MIR 123 201 -61 318 361 15 8 chr1 108391038 108391168 -134273185 - MER5A DNA MER1_type -18 171 41 24 0 0 0 chr1 108391491 108391515 -134272838 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 108391590 108391612 -134272741 + AT_rich Low_complexity Low_complexity 1 22 0 268 251 143 39 chr1 108392176 108392483 -134271870 - L1M4 LINE L1 -813 5333 4995 447 221 81 85 chr1 108392503 108393401 -134270952 - L1MD3 LINE L1 -63 6103 5278 353 231 0 0 chr1 108393639 108393717 -134270636 - L1 LINE L1 -867 5279 5202 506 48 0 0 chr1 108393720 108393782 -134270571 - AluY SINE Alu -14 295 234 759 193 21 32 chr1 108393793 108393980 -134270373 - L1MC4a LINE L1 -324 7484 7300 1012 25 0 0 chr1 108394125 108394243 -134270110 - L1PA4 LINE L1 -430 5724 5607 3549 31 5 0 chr1 108394243 108394665 -134269688 + L1PA4 LINE L1 5729 6154 -1 23 33 0 0 chr1 108395238 108395268 -134269085 + AT_rich Low_complexity Low_complexity 1 30 0 328 314 85 5 chr1 108395647 108395870 -134268483 - HAL1 LINE L1 -909 1598 1358 404 313 76 55 chr1 108395877 108396206 -134268147 - L1MEd LINE L1 -4888 1231 896 1011 287 82 75 chr1 108396216 108396805 -134267548 + MLT1E LTR MaLR 1 593 0 208 203 8 78 chr1 108396850 108396978 -134267375 + T-rich Low_complexity Low_complexity 4 122 0 25 65 0 0 chr1 108397644 108397690 -134266663 + AT_rich Low_complexity Low_complexity 1 46 0 853 276 72 61 chr1 108398233 108398782 -134265571 + MLT2E LTR ERVL 15 628 0 762 311 137 30 chr1 108398998 108399610 -134264743 - L2 LINE L2 -18 3295 2631 713 302 53 4 chr1 108400557 108400802 -134263551 + MIR SINE MIR 6 262 0 * 2112 315 94 37 chr1 108400793 108401837 -134262516 + L2 LINE L2 608 1724 -1590 2227 116 7 0 chr1 108401837 108402138 -134262215 + AluSx SINE Alu 1 303 -9 2112 315 94 37 chr1 108402138 108402234 -134262119 + L2 LINE L2 1724 1813 -1501 1022 287 62 20 chr1 108402347 108402737 -134261616 + L2 LINE L2 2299 2704 -610 24 32 0 0 chr1 108404066 108404097 -134260256 + AT_rich Low_complexity Low_complexity 1 31 0 337 266 85 18 chr1 108405167 108405371 -134258982 + MIR SINE MIR 6 259 -3 278 298 78 114 chr1 108405792 108406037 -134258316 + L2 LINE L2 3026 3261 -11 180 26 26 51 chr1 108406704 108406743 -134257610 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 298 214 12 12 chr1 108408281 108408365 -134255988 - MER112 DNA MER1_type -95 165 82 327 25 0 0 chr1 108408368 108408408 -134255945 + (TG)n Simple_repeat Simple_repeat 1 40 0 388 254 24 24 chr1 108409381 108409507 -134254846 - LTR16A1 LTR ERVL -2 455 330 186 288 15 15 chr1 108409981 108410047 -134254306 - MIR SINE MIR -16 246 181 21 0 0 0 chr1 108410216 108410237 -134254116 + AT_rich Low_complexity Low_complexity 1 21 0 1588 156 55 31 chr1 108410744 108411071 -134253282 + MER44D DNA MER2_type 3 607 -2 384 292 75 50 chr1 108413289 108413806 -134250547 + L1MC5 LINE L1 7292 7821 -140 384 47 31 16 chr1 108414054 108414118 -134250235 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 421 398 67 12 chr1 108414276 108414618 -134249735 + L2 LINE L2 2909 3269 -3 734 269 16 11 chr1 108416696 108416882 -134247471 + MIR SINE MIR 71 257 -5 256 307 50 50 chr1 108419234 108419374 -134244979 - L2 LINE L2 0 3313 3174 1063 278 128 24 chr1 108419463 108419783 -134244570 - L2 LINE L2 -157 3156 2871 2178 97 0 0 chr1 108419783 108420062 -134244291 - AluSc SINE Alu -28 281 3 1063 278 128 24 chr1 108420062 108420310 -134244043 - L2 LINE L2 -442 2871 2534 2735 254 50 82 chr1 108421302 108422477 -134241876 - L2 LINE L2 -835 2479 1342 21 0 0 0 chr1 108423046 108423067 -134241286 + AT_rich Low_complexity Low_complexity 1 21 0 1233 147 80 33 chr1 108424561 108424854 -134239499 - MER7A DNA MER2_type 0 337 1 180 250 0 0 chr1 108424858 108424906 -134239447 + (TA)n Simple_repeat Simple_repeat 1 48 0 301 212 94 0 chr1 108425067 108425152 -134239201 + L2 LINE L2 1197 1289 -2025 670 269 50 42 chr1 108426394 108426632 -134237721 + MIR SINE MIR 2 241 -21 1151 266 111 16 chr1 108426643 108427023 -134237330 + L2 LINE L2 2898 3313 0 222 265 0 12 chr1 108427278 108427361 -134236992 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 596 259 50 40 chr1 108427650 108427851 -134236502 - MIR SINE MIR 0 262 60 970 154 23 201 chr1 108430196 108430539 -134233814 + MLT1A2 LTR MaLR 3 284 -90 302 214 12 0 chr1 108430539 108430623 -134233730 + GA-rich Low_complexity Low_complexity 4 88 0 1098 322 162 22 chr1 108632991 108633863 -134030490 + L2 LINE L2 1471 2219 -1053 2242 119 138 5 chr1 108633863 108634241 -134030112 + MSTA LTR MaLR 1 428 0 1098 322 162 22 chr1 108634241 108634772 -134029581 + L2 LINE L2 2219 3071 -201 1662 189 4 0 chr1 108635476 108635756 -134028597 + AluSx SINE Alu 1 281 -31 321 243 0 0 chr1 108635779 108635853 -134028500 + MIR SINE MIR 118 191 -71 330 268 122 37 chr1 108636893 108637057 -134027296 - MER5B DNA MER1_type 0 178 1 860 147 0 0 chr1 108637200 108637329 -134027024 + FLAM_C SINE Alu 2 130 -3 370 320 49 0 chr1 108637379 108637501 -134026852 + L2 LINE L2 3186 3313 0 228 292 0 0 chr1 108637501 108637549 -134026804 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 265 167 0 74 chr1 108637629 108637683 -134026670 + MER110A LTR ERV1 80 129 -339 610 241 45 25 chr1 108637694 108637893 -134026460 + MER110A LTR ERV1 266 468 0 2224 95 0 20 chr1 108638729 108639025 -134025328 - AluSx SINE Alu -16 296 7 1196 142 8 6 chr1 108639067 108639428 -134024925 + MER61C LTR ERV1 2 404 -30 2131 136 55 35 chr1 108640751 108641172 -134023181 - MER51B LTR ERV1 0 377 1 236 268 122 0 chr1 108642295 108642377 -134021976 - MIR SINE MIR -170 92 1 210 357 13 96 chr1 108642556 108642713 -134021640 - L2 LINE L2 -611 2703 2560 709 278 112 43 chr1 108642768 108643186 -134021167 + MLT1J2 LTR MaLR 3 449 -1 2377 107 55 3 chr1 108643600 108643946 -134020407 - THE1B LTR MaLR 0 364 1 2233 108 0 13 chr1 108644009 108644323 -134020030 + AluY SINE Alu 2 311 0 2131 117 10 7 chr1 108644722 108645020 -134019333 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 108645107 108645129 -134019224 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr1 108645166 108645197 -134019156 + AT_rich Low_complexity Low_complexity 1 31 0 2438 103 0 0 chr1 108645335 108645646 -134018707 + AluSx SINE Alu 2 312 0 1501 211 149 10 chr1 108646751 108647235 -134017118 - MER39 LTR ERV1 0 707 1 236 232 0 18 chr1 108647306 108647362 -134016991 - MIR3 SINE MIR -15 193 139 2018 117 9 62 chr1 108647791 108648116 -134016237 + AluSx SINE Alu 1 308 -4 965 279 76 20 chr1 108650242 108650637 -134013716 - MLT1J LTR MaLR -92 419 3 513 240 169 0 chr1 108651390 108651544 -134012809 - MIR SINE MIR -24 238 59 282 294 0 24 chr1 108651799 108651884 -134012469 - MIR SINE MIR -179 83 1 1805 161 4 7 chr1 108652035 108652315 -134012038 + AluJo SINE Alu 6 284 -28 610 189 0 25 chr1 108652631 108652753 -134011600 + AluJo SINE Alu 119 237 -75 354 80 0 20 chr1 108653242 108653292 -134011061 - MLT2B1 LTR ERVL 0 520 472 * 652 229 63 76 chr1 108653271 108653494 -134010859 - MLT2B1 LTR ERVL -235 285 66 373 147 13 27 chr1 108653589 108653664 -134010689 - MLT2B2 LTR ERVL -441 74 1 267 222 125 0 chr1 108654130 108654202 -134010151 - L2 LINE L2 -1 3312 3232 630 187 8 96 chr1 108655971 108656161 -134008192 - MER5A DNA MER1_type -3 186 1 1223 221 63 87 chr1 108656282 108656398 -134007955 - MER39 LTR ERV1 -1 658 541 1707 146 14 30 chr1 108656398 108656693 -134007660 + AluJo SINE Alu 1 290 -22 1223 221 63 87 chr1 108656693 108657105 -134007248 - MER39 LTR ERV1 -118 541 5 1239 227 109 41 chr1 108657772 108658212 -134006141 - MER39 LTR ERV1 -6 701 232 200 348 116 0 chr1 108658317 108658429 -134005924 + L2 LINE L2 3121 3245 -27 192 274 267 34 chr1 108658638 108658784 -134005569 - MIR3 SINE MIR -1 207 28 2050 155 0 3 chr1 108658824 108659127 -134005226 + AluSx SINE Alu 1 302 -10 423 299 86 15 chr1 108659198 108659577 -134004776 + LTR16B LTR ERVL 1 464 0 1090 174 0 11 chr1 108660159 108660337 -134004016 + FRAM SINE Alu 1 176 0 2987 151 16 12 chr1 108660886 108661370 -134002983 - MER66B LTR ERV1 0 486 1 743 107 49 0 chr1 108661470 108661592 -134002761 + L1MA5 LINE L1 6171 6298 -2 219 328 82 16 chr1 108661734 108661856 -134002497 - L3b LINE CR1 -9 1574 1445 183 348 42 17 chr1 108662514 108662632 -134001721 + MIR SINE MIR 71 191 -71 697 238 115 8 chr1 108662637 108662872 -134001481 + MIR SINE MIR 3 262 0 1735 151 42 18 chr1 108662898 108663183 -134001170 + AluJo SINE Alu 1 292 -20 1832 160 0 7 chr1 108663186 108663468 -134000885 + AluJb SINE Alu 1 280 -32 2081 143 0 0 chr1 108664283 108664583 -133999770 + AluSx SINE Alu 3 302 -10 597 193 7 57 chr1 108665280 108665420 -133998933 + L2 LINE L2 3181 3313 0 1716 152 37 24 chr1 108665548 108665844 -133998509 + AluJo SINE Alu 1 300 -12 194 316 132 0 chr1 108666627 108666703 -133997650 - L2 LINE L2 -18 3254 3169 1568 254 39 64 chr1 108668101 108668267 -133996086 + L2 LINE L2 2375 2544 -769 2267 113 0 0 chr1 108668267 108668558 -133995795 + AluSg SINE Alu 1 291 -19 198 0 0 0 chr1 108668558 108668580 -133995773 + (TA)n Simple_repeat Simple_repeat 2 23 0 1568 254 39 64 chr1 108668580 108668842 -133995511 + L2 LINE L2 2543 2781 -532 1900 168 7 0 chr1 108668842 108669133 -133995220 + AluJb SINE Alu 1 293 -19 1568 254 39 64 chr1 108669133 108669364 -133994989 + L2 LINE L2 2781 3016 -297 2260 104 0 10 chr1 108670347 108670645 -133993708 + AluSg SINE Alu 1 295 -15 2077 136 0 0 chr1 108670871 108671166 -133993187 - AluSx SINE Alu -17 295 1 896 174 58 12 chr1 108671981 108672153 -133992200 - AluSg/x SINE Alu -4 308 129 235 279 39 19 chr1 108672175 108672279 -133992074 - MARNA DNA Mariner -227 359 254 1412 168 21 80 chr1 108672299 108672443 -133991910 + AluJo SINE Alu 3 154 -158 1938 124 0 41 chr1 108672443 108672734 -133991619 + AluSx SINE Alu 1 279 -33 343 36 54 0 chr1 108672737 108672793 -133991560 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1412 168 21 80 chr1 108672793 108672930 -133991423 + AluJo SINE Alu 156 271 -41 202 104 0 62 chr1 108672930 108672978 -133991375 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 205 377 61 53 chr1 108673070 108673412 -133990941 - L2 LINE L2 -89 3183 2839 524 290 19 31 chr1 108673462 108673624 -133990729 - MARNA DNA Mariner -412 174 15 436 216 17 86 chr1 108674137 108674253 -133990100 - MER5A DNA MER1_type -63 126 19 565 231 35 35 chr1 108674569 108674742 -133989611 + MER5B DNA MER1_type 6 178 0 414 0 0 0 chr1 108674955 108675001 -133989352 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 692 190 17 0 chr1 108675006 108675122 -133989231 - FLAM_C SINE Alu -15 118 1 921 164 35 18 chr1 108675378 108675549 -133988804 + FRAM SINE Alu 1 174 -2 842 152 8 0 chr1 108676093 108676225 -133988128 - FLAM_C SINE Alu -10 133 1 212 250 0 0 chr1 108676250 108676298 -133988055 - MIR SINE MIR -137 125 78 180 0 0 0 chr1 108677170 108677190 -133987163 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 882 132 0 0 chr1 108677192 108677321 -133987032 - AluSg/x SINE Alu -30 280 152 2219 105 10 0 chr1 108677331 108677626 -133986727 - AluSx SINE Alu -14 298 1 2561 173 50 14 chr1 108677653 108677854 -133986499 + LTR26E LTR ERV1 1 193 -429 1504 183 0 12 chr1 108677854 108678111 -133986242 - AluJo SINE Alu -19 293 40 2561 173 50 14 chr1 108678111 108678561 -133985792 + LTR26E LTR ERV1 193 605 -17 312 120 0 0 chr1 108678628 108678678 -133985675 + (T)n Simple_repeat Simple_repeat 1 50 0 242 320 30 10 chr1 108679103 108679203 -133985150 + MIR SINE MIR 5 106 -156 810 122 128 12 chr1 108679222 108679392 -133984961 - L1MB1 LINE L1 0 6168 6014 3465 192 95 9 chr1 108679411 108680155 -133984198 - L1MC4a LINE L1 -1 7807 7000 202 284 135 0 chr1 108680164 108680238 -133984115 + MIR SINE MIR 175 258 -4 1945 152 27 62 chr1 108680359 108680760 -133983593 - MLT1B LTR MaLR 0 390 4 293 241 131 66 chr1 108681197 108681334 -133983019 + MIR SINE MIR 70 215 -47 476 313 40 10 chr1 108682443 108682644 -133981709 - L2 LINE L2 -500 2814 2608 400 314 107 0 chr1 108683205 108683364 -133980989 + MIR SINE MIR 37 212 -50 324 269 156 21 chr1 108684191 108684278 -133980075 - MIR SINE MIR -65 197 123 684 198 9 0 chr1 108684278 108684389 -133979964 + MER81 DNA DNA 3 114 0 324 269 156 21 chr1 108684389 108684442 -133979911 - MIR SINE MIR -139 123 38 1629 179 11 11 chr1 108685347 108685632 -133978721 - AluJo SINE Alu -23 289 5 377 234 53 21 chr1 108685707 108685801 -133978552 - L2 LINE L2 -2 3270 3174 421 132 0 0 chr1 108686791 108686859 -133977494 - MIR SINE MIR -66 196 129 695 303 110 23 chr1 108686980 108687202 -133977151 - L2 LINE L2 0 3313 3112 2019 155 3 0 chr1 108687202 108687511 -133976842 + AluSx SINE Alu 1 310 -2 695 303 110 23 chr1 108687511 108687717 -133976636 - L2 LINE L2 -201 3112 2848 766 287 49 5 chr1 108687846 108688069 -133976284 + MIR SINE MIR 4 236 -26 2009 103 169 26 chr1 108688396 108688786 -133975567 - Tigger2 DNA MER2_type 0 2718 2273 396 171 0 14 chr1 108688776 108688846 -133975507 - Tigger2 DNA MER2_type -2649 69 1 * 433 297 40 86 chr1 108688921 108689224 -133975129 - L1MC/D LINE L1 -2023 5785 5497 1339 208 38 35 chr1 108689293 108689610 -133974743 - L1ME2 LINE L1 -19 6145 5828 452 129 186 0 chr1 108689631 108689701 -133974652 + FRAM/FAM SINE Alu 1 83 -93 1927 212 65 17 chr1 108689705 108690319 -133974034 - L1ME2 LINE L1 -17 6145 5468 204 143 0 0 chr1 108690330 108690372 -133973981 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 2080 231 91 105 chr1 108690393 108691289 -133973064 - L1ME2 LINE L1 -913 5233 4357 10436 37 1 1 chr1 108691289 108693235 -133971118 + L1PA5 LINE L1 4193 6146 -8 2080 231 91 105 chr1 108693235 108693551 -133970802 - L1ME2 LINE L1 -1789 4357 4038 1721 188 0 7 chr1 108693557 108693845 -133970508 - AluJo SINE Alu -24 288 3 1221 232 21 47 chr1 108694632 108695110 -133969243 - L1ME2 LINE L1 -2108 4038 3588 1788 166 10 3 chr1 108695112 108695407 -133968946 + AluJo SINE Alu 1 297 -15 1738 142 3 83 chr1 108695432 108695565 -133968788 + AluJo SINE Alu 1 143 -169 1822 138 7 37 chr1 108695565 108695861 -133968492 + AluSx SINE Alu 1 287 -25 1738 142 3 83 chr1 108695861 108696066 -133968287 + AluJo SINE Alu 143 312 0 264 254 0 0 chr1 108696066 108696125 -133968228 - L1ME2 LINE L1 -2566 3580 3522 3298 308 82 75 chr1 108696126 108698449 -133965904 - HERV16 LTR ERVL -715 4281 1942 489 266 18 0 chr1 108698460 108698573 -133965780 - LTR16A LTR ERVL -177 273 159 758 271 73 65 chr1 108698664 108698902 -133965451 - LTR16A LTR ERVL -57 400 165 1717 166 0 44 chr1 108698902 108699222 -133965131 + AluSx SINE Alu 1 306 -6 758 271 73 65 chr1 108699222 108699374 -133964979 - LTR16A LTR ERVL -292 165 16 1106 298 103 50 chr1 108699388 108700186 -133964167 - L2 LINE L2 -1080 2234 1395 1362 194 45 52 chr1 108700850 108701160 -133963193 - AluJb SINE Alu -2 310 3 1947 162 0 7 chr1 108701241 108701543 -133962810 + AluJo SINE Alu 1 300 -12 2175 92 4 7 chr1 108701546 108701850 -133962503 + AluSc SINE Alu 1 303 0 187 243 0 0 chr1 108701886 108701923 -133962430 - MIR SINE MIR -3 259 223 261 0 0 0 chr1 108704091 108704120 -133960233 + (A)n Simple_repeat Simple_repeat 1 29 0 721 169 34 0 chr1 108705072 108705190 -133959163 + FLAM_C SINE Alu 1 122 -11 357 270 25 58 chr1 108705602 108705744 -133958609 + MIR SINE MIR 26 162 -46 760 28 19 9 chr1 108706615 108706722 -133957631 + (GAAA)n Simple_repeat Simple_repeat 3 110 0 1828 174 0 3 chr1 108707383 108707682 -133956671 - AluJb SINE Alu -14 298 1 380 233 133 0 chr1 108708118 108708208 -133956145 + L2 LINE L2 3212 3313 0 2135 99 0 11 chr1 108708265 108708569 -133955784 - AluY SINE Alu 0 301 1 2008 62 0 92 chr1 108709013 108709317 -133955036 - AluY SINE Alu -2 309 34 2369 93 0 3 chr1 108709420 108709720 -133954633 - AluSx SINE Alu -8 304 6 395 310 0 9 chr1 108709724 108709837 -133954516 - MIR SINE MIR -114 148 37 1395 186 32 7 chr1 108709986 108710306 -133954047 + AluJb SINE Alu 1 312 0 324 243 0 0 chr1 108711042 108711112 -133953241 + MIR3 SINE MIR 129 198 -10 195 286 98 36 chr1 108711173 108711285 -133953068 + MIR SINE MIR 61 179 -83 907 114 9 11 chr1 108711381 108711735 -133952618 + (TA)n Simple_repeat Simple_repeat 1 353 0 47 0 0 0 chr1 108711735 108711782 -133952571 + AT_rich Low_complexity Low_complexity 1 47 0 511 152 30 0 chr1 108711784 108711948 -133952405 + (TA)n Simple_repeat Simple_repeat 1 169 0 319 292 0 21 chr1 108712022 108712118 -133952235 - L1MC4 LINE L1 -1339 6703 6610 1295 165 139 55 chr1 108712163 108712436 -133951917 - AluJo SINE Alu -2 300 5 2160 47 0 4 chr1 108712596 108712853 -133951500 + AluY SINE Alu 39 294 -17 599 304 91 19 chr1 108713199 108713462 -133950891 + MER102a DNA MER1_type 36 317 -13 21 0 0 0 chr1 108715160 108715181 -133949172 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 108715296 108715319 -133949034 + AT_rich Low_complexity Low_complexity 1 23 0 819 142 7 40 chr1 108715860 108716008 -133948345 + FLAM_C SINE Alu 1 143 0 1424 143 49 63 chr1 108716278 108716564 -133947789 + AluJo SINE Alu 1 282 -30 2327 109 0 0 chr1 108716610 108716914 -133947439 - AluSg SINE Alu -6 304 1 22 70 0 0 chr1 108718115 108718158 -133946195 + AT_rich Low_complexity Low_complexity 1 43 0 2206 128 0 0 chr1 108718290 108718595 -133945758 + AluSx SINE Alu 1 305 -7 243 304 43 0 chr1 108718672 108718741 -133945612 + L2 LINE L2 3155 3226 -46 1417 127 0 53 chr1 108719145 108719175 -133945178 + L1PA16 LINE L1 5942 5972 -194 1632 190 17 0 chr1 108719175 108719464 -133944889 + AluJo SINE Alu 1 294 -18 1417 127 0 53 chr1 108719464 108719661 -133944692 + L1PA16 LINE L1 5972 6157 -9 1953 138 3 31 chr1 108720173 108720493 -133943860 - AluJb SINE Alu -1 311 1 1258 248 51 14 chr1 108720602 108720953 -133943400 - L1ME2 LINE L1 -39 6125 5762 1394 168 0 40 chr1 108721709 108721959 -133942394 + AluJo SINE Alu 54 293 -19 240 35 0 0 chr1 108728363 108728392 -133935961 + (A)n Simple_repeat Simple_repeat 1 29 0 331 315 62 14 chr1 108729846 108729992 -133934361 - MIR SINE MIR -60 202 50 375 257 106 0 chr1 108730304 108730417 -133933936 - MIR SINE MIR -57 205 81 267 200 35 104 chr1 108730927 108731004 -133933349 - MER53 DNA DNA -82 107 39 2344 106 3 0 chr1 108731004 108731307 -133933046 - AluSx SINE Alu -8 304 1 267 200 35 104 chr1 108731307 108731344 -133933009 - MER53 DNA DNA -150 39 1 1700 146 0 45 chr1 108731356 108731664 -133932689 - AluJo SINE Alu -5 307 14 585 251 77 16 chr1 108732145 108732328 -133932025 + MIR SINE MIR 12 205 -57 288 0 0 0 chr1 108732380 108732412 -133931941 + (TTA)n Simple_repeat Simple_repeat 2 33 0 12500 80 3 0 chr1 108732413 108734751 -133929602 - L1PA7 LINE L1 -17 6137 3793 261 291 76 38 chr1 108734859 108735096 -133929257 - HAL1 LINE L1 -11 2496 2251 1730 280 136 37 chr1 108735102 108736254 -133928099 - HAL1 LINE L1 -817 1690 425 25 31 0 0 chr1 108736312 108736344 -133928009 + AT_rich Low_complexity Low_complexity 1 32 0 645 137 20 0 chr1 108736353 108736455 -133927898 + U13 snRNA snRNA 1 104 0 345 268 98 31 chr1 108736591 108736785 -133927568 - HAL1 LINE L1 -2166 341 135 718 239 74 49 chr1 108736786 108737029 -133927324 + MER69 DNA AcHobo 2 250 -2276 580 242 25 13 chr1 108737100 108737257 -133927096 + MER69 DNA AcHobo 535 693 -1833 2221 116 0 0 chr1 108737260 108737552 -133926801 - AluSx SINE Alu 0 312 21 1021 140 0 14 chr1 108737560 108737703 -133926650 - AluSq/x SINE Alu -172 141 1 2491 222 95 27 chr1 108737777 108738616 -133925737 + MER69 DNA AcHobo 1472 2386 -140 2513 75 0 3 chr1 108738616 108738922 -133925431 - AluSg SINE Alu -5 305 1 2491 222 95 27 chr1 108738922 108739043 -133925310 + MER69 DNA AcHobo 2386 2497 -29 340 258 121 16 chr1 108739192 108739357 -133924996 - HAL1 LINE L1 0 2507 2306 2437 64 0 0 chr1 108739357 108739652 -133924701 - AluY SINE Alu -16 295 1 340 258 121 16 chr1 108739652 108739734 -133924619 - HAL1 LINE L1 -201 2306 2234 251 193 18 0 chr1 108739861 108739918 -133924435 - HAL1 LINE L1 -361 2146 2089 460 171 59 6 chr1 108739927 108740097 -133924256 + (TA)n Simple_repeat Simple_repeat 1 179 0 1283 245 176 4 chr1 108740129 108740619 -133923734 - HAL1 LINE L1 -475 2032 1459 507 245 105 0 chr1 108740628 108740771 -133923582 + MLT1F LTR MaLR 40 197 -398 198 0 0 0 chr1 108740771 108740793 -133923560 + (TAA)n Simple_repeat Simple_repeat 3 24 0 180 0 0 0 chr1 108740806 108740826 -133923527 + (TC)n Simple_repeat Simple_repeat 1 20 0 1347 153 21 176 chr1 108740869 108741301 -133923052 - MLT1A1 LTR MaLR 0 365 1 216 0 0 0 chr1 108741321 108741345 -133923008 + (GGA)n Simple_repeat Simple_repeat 2 25 0 827 20 10 0 chr1 108741345 108741446 -133922907 + (GA)n Simple_repeat Simple_repeat 1 102 0 560 192 50 38 chr1 108741527 108741696 -133922657 + MLT1F LTR MaLR 371 595 0 333 287 24 83 chr1 108741727 108741981 -133922372 - HAL1 LINE L1 -1061 1446 1208 217 195 0 0 chr1 108742051 108742092 -133922261 - L2 LINE L2 -6 3307 3267 254 141 16 16 chr1 108742117 108742181 -133922172 - HAL1 LINE L1 -1405 1102 1039 795 280 120 63 chr1 108742601 108743169 -133921184 - HAL1 LINE L1 -1907 600 1 292 356 108 0 chr1 108743171 108743421 -133920932 + L2 LINE L2 1821 2097 -1217 621 196 59 39 chr1 108743473 108743626 -133920727 - MIR SINE MIR -28 234 79 295 346 60 60 chr1 108743706 108744160 -133920193 + L2 LINE L2 2186 2639 -675 732 291 97 15 chr1 108744467 108744735 -133919618 - L2 LINE L2 0 3313 3024 333 0 0 0 chr1 108745367 108745404 -133918949 + (CA)n Simple_repeat Simple_repeat 2 38 0 2156 136 3 0 chr1 108745836 108746138 -133918215 + AluSx SINE Alu 1 303 -9 348 161 0 0 chr1 108746417 108746479 -133917874 + GA-rich Low_complexity Low_complexity 1 62 0 474 222 14 97 chr1 108746560 108746704 -133917649 + L2 LINE L2 3164 3295 -18 31 26 0 0 chr1 108747023 108747061 -133917292 + AT_rich Low_complexity Low_complexity 1 38 0 808 254 89 25 chr1 108747786 108748066 -133916287 + L2 LINE L2 2932 3229 -84 679 288 120 37 chr1 108749115 108749497 -133914856 + L2 LINE L2 2295 2708 -606 6064 189 7 5 chr1 108749531 108749796 -133914557 - L1MC1 LINE L1 -6 6327 6064 2335 75 0 0 chr1 108749796 108750076 -133914277 + AluY SINE Alu 12 291 -20 6064 189 7 5 chr1 108750076 108751426 -133912927 - L1MC1 LINE L1 -269 6064 4708 2183 119 0 0 chr1 108751453 108751739 -133912614 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr1 108751739 108751766 -133912587 + AT_rich Low_complexity Low_complexity 1 27 0 644 111 20 0 chr1 108751821 108751920 -133912433 + LTR49-int LTR ERV1 5039 5139 -1192 314 250 83 0 chr1 108751941 108752025 -133912328 - L1M4c LINE L1 -5517 867 777 528 173 0 0 chr1 108752040 108752121 -133912232 + FLAM_C SINE Alu 37 117 -26 321 307 0 11 chr1 108752226 108752314 -133912039 + MIR SINE MIR 24 110 -152 876 196 74 0 chr1 108752327 108752490 -133911863 - MER21B LTR ERV1 -360 503 329 2563 152 93 47 chr1 108752492 108753378 -133910975 + LTR49-int LTR ERV1 5128 6075 -648 1236 158 140 54 chr1 108753380 108753715 -133910638 + LTR47A LTR ERVL 2 365 -87 1707 138 16 72 chr1 108753780 108754099 -133910254 + AluJb SINE Alu 1 301 -11 528 311 115 52 chr1 108754169 108754613 -133909740 + L2 LINE L2 2842 3313 0 207 0 0 0 chr1 108754789 108754812 -133909541 + (T)n Simple_repeat Simple_repeat 1 23 0 2029 125 7 0 chr1 108755232 108755536 -133908817 + AluSx SINE Alu 1 306 0 1621 186 3 17 chr1 108756001 108756292 -133908061 - AluJo SINE Alu -16 296 10 278 277 208 0 chr1 108756336 108756437 -133907916 - L2 LINE L2 0 3313 3192 2096 116 7 7 chr1 108757420 108757722 -133906631 + AluSq SINE Alu 4 305 -8 2024 141 0 0 chr1 108757965 108758282 -133906071 + AluSx SINE Alu 1 312 0 1959 157 7 0 chr1 108758795 108759094 -133905259 - AluSx SINE Alu -11 301 1 458 299 41 23 chr1 108759149 108759370 -133904983 - LTR33 LTR ERVL 0 521 297 230 319 0 43 chr1 108759475 108759569 -133904784 - LTR33 LTR ERVL -385 136 47 271 339 26 17 chr1 108759649 108759764 -133904589 - MIR SINE MIR -142 120 5 22 0 0 0 chr1 108759812 108759834 -133904519 + AT_rich Low_complexity Low_complexity 1 22 0 490 264 132 10 chr1 108760058 108760255 -133904098 + MIR SINE MIR 14 234 -28 300 249 103 38 chr1 108760306 108760448 -133903905 - MIR SINE MIR -61 147 36 207 250 42 0 chr1 108761117 108761165 -133903188 + L2 LINE L2 3136 3185 -87 * 260 215 15 46 chr1 108761163 108761228 -133903125 - L2 LINE L2 -2 3270 3208 331 235 29 0 chr1 108761230 108761298 -133903055 + L2 LINE L2 3187 3256 -16 418 216 56 32 chr1 108761815 108761940 -133902413 - LTR67 LTR ERVL -2 555 428 928 157 11 38 chr1 108762352 108762537 -133901816 + MLT1D LTR MaLR 3 182 -323 476 186 95 186 chr1 108763055 108763318 -133901035 + MER8 DNA MER2_type 1 239 0 2136 90 7 0 chr1 108764814 108765139 -133899214 - AluSg1 SINE Alu 0 327 1 2024 163 33 3 chr1 108765144 108765536 -133898817 - L1MC1 LINE L1 -110 6223 5820 2005 145 28 3 chr1 108766330 108766682 -133897671 - Tigger2 DNA MER2_type -7 2711 2351 439 90 0 120 chr1 108766682 108766782 -133897571 - Tigger2 DNA MER2_type -2486 232 145 225 77 0 0 chr1 108766803 108766842 -133897511 - Alu SINE Alu 0 302 264 229 317 0 0 chr1 108766942 108767002 -133897351 + GA-rich Low_complexity Low_complexity 2 61 0 419 253 40 85 chr1 108767489 108767817 -133896536 - L1ME1 LINE L1 0 6178 5863 237 273 0 0 chr1 108768257 108768312 -133896041 + (CA)n Simple_repeat Simple_repeat 2 56 0 2367 74 0 0 chr1 108768540 108768823 -133895530 + AluSg SINE Alu 1 283 -27 197 225 0 0 chr1 108768858 108768898 -133895455 + L2 LINE L2 3232 3271 -1 21 36 0 0 chr1 108769545 108769573 -133894780 + AT_rich Low_complexity Low_complexity 1 28 0 1677 179 7 7 chr1 108770027 108770062 -133894291 - AluJo SINE Alu 0 841 807 1574 198 40 40 chr1 108770062 108770436 -133893917 + THE1C LTR MaLR 1 374 -1 1677 179 7 7 chr1 108770436 108770868 -133893485 - AluJo SINE Alu -33 808 1 31 26 0 0 chr1 108771064 108771102 -133893251 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 108771391 108771414 -133892939 + AT_rich Low_complexity Low_complexity 1 23 0 1536 123 0 0 chr1 108771467 108771679 -133892674 - AluSg/x SINE Alu -17 295 84 416 298 22 76 chr1 108772225 108772450 -133891903 - MIR SINE MIR -13 249 37 381 269 37 0 chr1 108772571 108772679 -133891674 - L2 LINE L2 -1 3312 3201 235 346 89 0 chr1 108772716 108772817 -133891536 - L2 LINE L2 -262 3051 2942 758 235 103 5 chr1 108772840 108773173 -133891180 + LTR16A LTR ERVL 24 447 -3 330 318 61 37 chr1 108773195 108773409 -133890944 - L2 LINE L2 -410 2904 2686 1170 173 30 5 chr1 108773409 108773611 -133890742 + AluJb SINE Alu 1 207 -105 415 197 0 0 chr1 108773758 108773824 -133890529 + AluJb SINE Alu 205 270 -42 457 194 28 19 chr1 108773824 108773932 -133890421 + THE1C LTR MaLR 263 371 -4 243 0 0 0 chr1 108773932 108773959 -133890394 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 552 224 18 6 chr1 108773975 108774140 -133890213 + GA-rich Low_complexity Low_complexity 2 168 0 609 148 0 0 chr1 108774268 108774356 -133889997 - AluJ/FLAM SINE Alu -224 88 1 2165 89 0 0 chr1 108774367 108774692 -133889661 - AluSx SINE Alu 0 325 1 926 138 0 20 chr1 108774701 108774853 -133889500 - Tigger2 DNA MER2_type -2569 149 1 1877 166 10 3 chr1 108775885 108776181 -133888172 + AluJb SINE Alu 1 298 -14 468 182 41 33 chr1 108776349 108776470 -133887883 - MER46C DNA MER2_type -216 122 1 2069 130 0 16 chr1 108777658 108777965 -133886388 + AluSx SINE Alu 1 302 -10 303 274 57 38 chr1 108778429 108778535 -133885818 - MIR SINE MIR -66 142 35 1490 276 98 13 chr1 108778591 108779373 -133884980 - L2 LINE L2 0 3313 2449 553 283 100 49 chr1 108779553 108780006 -133884347 - MLT1J2 LTR MaLR -4 446 1 229 177 0 32 chr1 108780083 108780145 -133884208 - MER50 LTR ERV1 -274 460 401 1436 243 207 18 chr1 108780183 108780694 -133883659 - L2 LINE L2 -926 2388 1781 502 285 31 0 chr1 108780833 108780963 -133883390 - MIR SINE MIR -122 140 7 864 119 8 0 chr1 108782256 108782374 -133881979 - AluSg/x SINE Alu -20 292 174 26 30 0 0 chr1 108784757 108784790 -133879563 + AT_rich Low_complexity Low_complexity 1 33 0 10387 97 4 9 chr1 108784944 108786461 -133877892 - L1PA7 LINE L1 -1202 4944 3436 6029 79 49 2 chr1 108786461 108787621 -133876732 + L1PA7 LINE L1 4950 6149 -5 195 167 0 0 chr1 108787624 108787666 -133876687 + GA-rich Low_complexity Low_complexity 1 42 0 325 245 107 100 chr1 108788674 108788840 -133875513 - L1ME4a LINE L1 -11 6110 5947 198 0 0 0 chr1 108788840 108788862 -133875491 + (CA)n Simple_repeat Simple_repeat 1 22 0 325 245 107 100 chr1 108788862 108789124 -133875229 - L1ME4a LINE L1 -174 5947 5679 428 360 17 12 chr1 108789393 108789565 -133874788 + L2 LINE L2 2561 2733 -581 246 296 72 24 chr1 108789703 108789828 -133874525 - HAL1b LINE L1 -31 1317 1187 547 256 73 0 chr1 108790088 108790225 -133874128 + MLT1J2 LTR MaLR 1 147 -303 501 213 0 0 chr1 108790223 108790317 -133874036 + MER94 DNA DNA 5 98 -36 * 255 362 181 0 chr1 108790647 108790774 -133873579 + L2 LINE L2 3123 3272 0 570 116 11 0 chr1 108791986 108792081 -133872272 + L1MB4 LINE L1 6085 6180 0 25 0 0 0 chr1 108792973 108792998 -133871355 + AT_rich Low_complexity Low_complexity 1 25 0 243 327 35 9 chr1 108793564 108793677 -133870676 - MIR SINE MIR -40 222 107 846 181 61 181 chr1 108793972 108794016 -133870337 + Charlie2 DNA MER1_type 1948 1996 -866 2258 84 0 0 chr1 108794016 108794301 -133870052 - AluY SINE Alu -26 285 1 846 181 61 181 chr1 108794301 108794946 -133869407 + Charlie2 DNA MER1_type 1996 2554 -308 239 185 19 19 chr1 108795058 108795112 -133869241 + CT-rich Low_complexity Low_complexity 3 56 0 427 271 47 31 chr1 108795758 108795887 -133868466 - MLT1K LTR MaLR -347 241 111 553 218 141 21 chr1 108796046 108796188 -133868165 + MIR SINE MIR 1 159 -103 21 0 0 0 chr1 108796509 108796530 -133867823 + AT_rich Low_complexity Low_complexity 1 21 0 287 259 37 65 chr1 108797272 108797380 -133866973 - MLT1K LTR MaLR -352 236 132 1187 156 38 0 chr1 108797982 108798193 -133866160 + MER20 DNA MER1_type 1 219 0 909 136 0 0 chr1 108798216 108798341 -133866012 + AluSq/x SINE Alu 1 125 -187 23 68 0 0 chr1 108798632 108798676 -133865677 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 108798711 108798732 -133865621 + AT_rich Low_complexity Low_complexity 1 21 0 233 373 84 0 chr1 108799118 108799260 -133865093 - L2 LINE L2 -926 2388 2235 1390 170 125 31 chr1 108799316 108799811 -133864542 - L1ME LINE L1 -676 5490 4965 245 206 0 14 chr1 108800964 108801037 -133863316 + (TA)n Simple_repeat Simple_repeat 2 73 0 7223 44 1 11 chr1 108801038 108802594 -133861759 + L1PA5 LINE L1 4604 6149 -5 410 316 150 31 chr1 108802849 108803301 -133861052 - L2 LINE L2 -353 2961 2456 21 0 0 0 chr1 108804330 108804351 -133860002 + AT_rich Low_complexity Low_complexity 1 21 0 220 263 16 72 chr1 108805421 108805594 -133858759 + MER5A DNA MER1_type 24 147 -31 1974 183 18 27 chr1 108805594 108806043 -133858310 - L1MB7 LINE L1 0 6184 5740 544 296 49 29 chr1 108806164 108806372 -133857981 + MIR SINE MIR 20 232 -30 620 244 204 25 chr1 108806593 108806794 -133857559 + MIR SINE MIR 1 237 -25 201 211 35 35 chr1 108806762 108806819 -133857534 + L2 LINE L2 3210 3266 -6 * 593 153 161 16 chr1 108806833 108806957 -133857396 - FRAM SINE Alu -15 161 20 206 264 0 0 chr1 108807214 108807267 -133857086 - L2 LINE L2 -655 2659 2607 1612 235 184 29 chr1 108807831 108808346 -133856007 + MLT1E2 LTR MaLR 1 595 -31 1491 177 89 7 chr1 108808346 108808628 -133855725 - AluJo SINE Alu -7 305 1 1837 159 45 0 chr1 108808634 108808923 -133855430 - AluSx SINE Alu -10 302 1 25 0 0 0 chr1 108809046 108809071 -133855282 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr1 108809431 108809458 -133854895 + AT_rich Low_complexity Low_complexity 1 27 0 1641 180 87 26 chr1 108809460 108809804 -133854549 + MLT1A1 LTR MaLR 1 365 0 743 185 0 15 chr1 108810847 108810982 -133853371 - AluJb SINE Alu -179 133 1 492 301 81 0 chr1 108811015 108811151 -133853202 + MIR SINE MIR 12 158 -104 380 241 70 44 chr1 108811325 108811483 -133852870 - LTR16C LTR ERVL -2 489 328 24 32 0 0 chr1 108812959 108812990 -133851363 + AT_rich Low_complexity Low_complexity 1 31 0 472 296 130 22 chr1 108813092 108813315 -133851038 - MIR SINE MIR -4 258 12 260 146 83 0 chr1 108813357 108813405 -133850948 + U2 snRNA snRNA 1 52 -136 211 284 15 0 chr1 108813455 108813522 -133850831 + (TAG)n Simple_repeat Simple_repeat 1 68 0 329 274 105 40 chr1 108813706 108813830 -133850523 + MIR SINE MIR 6 137 -125 214 277 138 0 chr1 108813819 108813884 -133850469 + L2 LINE L2 3194 3267 -5 * 276 130 0 0 chr1 108814406 108814452 -133849901 + (GA)n Simple_repeat Simple_repeat 1 46 0 3548 189 23 7 chr1 108815188 108815923 -133848430 - L1MB3 LINE L1 -2 6181 5435 22 0 0 0 chr1 108815924 108815946 -133848407 + AT_rich Low_complexity Low_complexity 1 22 0 754 237 56 19 chr1 108816436 108816651 -133847702 - L1MB3 LINE L1 -102 6081 5859 186 103 0 0 chr1 108816745 108816774 -133847579 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 192 139 56 0 chr1 108816774 108816810 -133847543 - L2 LINE L2 -13 3300 3263 479 320 83 0 chr1 108817215 108817371 -133846982 + Charlie8 DNA MER1_type 95 263 -2154 399 241 0 18 chr1 108817378 108817544 -133846809 + (TA)n Simple_repeat Simple_repeat 2 164 0 267 358 92 45 chr1 108818326 108818751 -133845602 - L2 LINE L2 -7 3265 2821 205 345 11 0 chr1 108819245 108819332 -133845021 - L2 LINE L2 -567 2747 2660 514 151 32 0 chr1 108819526 108819619 -133844734 + L1PB1 LINE L1 5697 5792 -362 352 632 6 0 chr1 108819621 108819784 -133844569 + (CA)n Simple_repeat Simple_repeat 2 165 0 2576 82 6 19 chr1 108819784 108820150 -133844203 + L1PB1 LINE L1 5791 6151 0 2038 106 0 0 chr1 108821856 108822120 -133842233 + AluSg SINE Alu 3 266 -44 24 85 0 0 chr1 108822363 108822422 -133841931 + AT_rich Low_complexity Low_complexity 1 59 0 2213 89 0 20 chr1 108822643 108822945 -133841408 - AluSc SINE Alu -13 296 1 24 0 0 0 chr1 108823567 108823591 -133840762 + AT_rich Low_complexity Low_complexity 1 24 0 221 327 62 35 chr1 108824798 108824911 -133839442 + L2 LINE L2 3137 3252 -20 467 327 23 99 chr1 108825588 108825940 -133838413 - L2 LINE L2 0 3272 2948 617 263 95 22 chr1 108826456 108826798 -133837555 + LTR43 LTR ERV1 187 460 -52 311 353 36 29 chr1 108826853 108827128 -133837225 - L2 LINE L2 -707 2607 2331 25 51 0 0 chr1 108828205 108828244 -133836109 + AT_rich Low_complexity Low_complexity 1 39 0 1628 48 39 0 chr1 108828326 108828534 -133835819 + L1PA4 LINE L1 5906 6121 -34 254 217 192 102 chr1 108830025 108830154 -133834199 + MIR SINE MIR 32 198 -46 203 244 0 0 chr1 108830279 108830324 -133834029 + MIR SINE MIR 106 150 -112 710 220 96 24 chr1 108830429 108830638 -133833715 - MLT1J LTR MaLR 0 511 288 4717 173 34 1 chr1 108830956 108831762 -133832591 + L1MCa LINE L1 1 832 -5594 1334 242 80 9 chr1 108831762 108832088 -133832265 - MSTD LTR MaLR 0 396 48 2212 163 136 5 chr1 108832088 108832492 -133831861 - MSTB2 LTR MaLR 0 457 1 388 80 0 0 chr1 108832494 108832544 -133831809 - MSTD LTR MaLR -346 50 1 797 101 24 178 chr1 108832545 108832685 -133831668 + L1MCa LINE L1 829 916 -5510 1337 77 0 6 chr1 108832685 108832866 -133831487 + L1PA7 LINE L1 5975 6154 0 797 101 24 178 chr1 108832866 108832972 -133831381 + L1MCa LINE L1 916 1037 -5389 4279 235 109 40 chr1 108833072 108834360 -133829993 + MLT1A1-int LTR MaLR 359 1735 0 1792 224 3 8 chr1 108834360 108834726 -133829627 + MLT1A1 LTR MaLR 1 364 -1 876 174 74 5 chr1 108834730 108834920 -133829433 + L1MCa LINE L1 1291 1493 -4933 250 266 31 0 chr1 108835923 108835987 -133828366 + L2 LINE L2 2223 2288 -1026 245 305 0 95 chr1 108835992 108836097 -133828256 - L2 LINE L2 -2 3311 3217 248 303 0 56 chr1 108836823 108836912 -133827441 - L3 LINE CR1 -37 1540 1457 21 0 0 0 chr1 108838321 108838342 -133826011 + AT_rich Low_complexity Low_complexity 1 21 0 367 289 26 72 chr1 108838634 108838786 -133825567 - L2 LINE L2 -1 3312 3168 204 365 62 0 chr1 108839402 108839498 -133824855 - L2 LINE L2 -4 3268 3167 2088 146 0 3 chr1 108839630 108839931 -133824422 - AluSx SINE Alu -12 300 1 1702 216 79 17 chr1 108840153 108840659 -133823694 + MER119 DNA MER1_type 1 583 0 240 236 118 55 chr1 108840659 108840758 -133823595 + MLT1L LTR MaLR 145 250 -365 284 130 0 0 chr1 108840765 108840811 -133823542 + Tigger1 DNA MER2_type 1474 1519 -899 23 0 0 0 chr1 108841055 108841078 -133823275 + AT_rich Low_complexity Low_complexity 1 23 0 506 347 42 76 chr1 108841453 108841862 -133822491 + L2 LINE L2 2877 3271 -1 324 316 51 0 chr1 108843011 108843109 -133821244 - MIR SINE MIR -156 106 4 735 168 0 15 chr1 108845031 108845162 -133819191 + FLAM_A SINE Alu 2 130 -3 274 237 8 114 chr1 108846045 108846176 -133818177 + MIR SINE MIR 134 250 -12 417 285 89 0 chr1 108846465 108846588 -133817765 + MIR SINE MIR 100 233 -29 198 0 0 0 chr1 108847006 108847028 -133817325 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2216 36 0 0 chr1 108847972 108848268 -133816085 + AluY SINE Alu 33 328 0 837 221 72 5 chr1 108849020 108849228 -133815125 - MER58A DNA MER1_type 0 224 3 195 69 0 0 chr1 108849517 108849546 -133814807 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 602 356 42 21 chr1 108849949 108850238 -133814115 + MLT1K LTR MaLR 2 296 -292 344 40 20 0 chr1 108850351 108850401 -133813952 + L1PA2 LINE L1 6102 6152 -3 878 227 74 93 chr1 108850413 108851209 -133813144 - L1M4 LINE L1 -1988 4158 3198 926 123 80 0 chr1 108851209 108851372 -133812981 + L1MB7 LINE L1 6003 6178 -6 2076 112 3 35 chr1 108852582 108852896 -133811457 + AluSx SINE Alu 2 305 -7 448 255 135 51 chr1 108853307 108853607 -133810746 + MLT1H1 LTR MaLR 251 555 0 2050 97 11 0 chr1 108853898 108854204 -133810149 - AluY SINE Alu 0 309 1 1803 181 68 135 chr1 108854214 108855150 -133809203 + Charlie2 DNA MER1_type 1988 2861 -1 561 225 21 7 chr1 108856549 108856691 -133807662 - L1MC5 LINE L1 -74 7887 7744 228 324 81 54 chr1 108857788 108857899 -133806454 + L2 LINE L2 3150 3263 -9 840 109 0 0 chr1 108858734 108858853 -133805500 + FLAM_A SINE Alu 2 120 -13 194 103 0 26 chr1 108858856 108858895 -133805458 + (TA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr1 108859848 108859869 -133804484 + AT_rich Low_complexity Low_complexity 1 21 0 312 316 79 26 chr1 108861156 108861270 -133803083 - L2 LINE L2 0 3272 3153 257 216 0 0 chr1 108861341 108861392 -133802961 - L2 LINE L2 0 3313 3263 238 319 14 0 chr1 108861457 108861526 -133802827 + L2 LINE L2 3201 3270 -2 362 23 0 0 chr1 108861826 108861869 -133802484 + MER85 DNA T2_type 1 43 -96 6210 97 14 10 chr1 108862052 108863012 -133801341 + L1PA10 LINE L1 5205 6168 0 1510 221 42 90 chr1 108863038 108863627 -133800726 + L2 LINE L2 2756 3313 0 39 0 0 0 chr1 108864185 108864224 -133800129 + AT_rich Low_complexity Low_complexity 1 39 0 861 133 0 30 chr1 108864378 108864513 -133799840 - FLAM_C SINE Alu -2 131 1 25 65 0 0 chr1 108864684 108864730 -133799623 + AT_rich Low_complexity Low_complexity 1 46 0 693 209 0 0 chr1 108865129 108865244 -133799109 + FLAM_A SINE Alu 1 115 -18 543 216 20 0 chr1 108865357 108865459 -133798894 - MER81 DNA DNA 0 114 11 261 262 39 78 chr1 108865830 108865933 -133798420 - MIR SINE MIR -142 120 22 2314 113 0 0 chr1 108866587 108866889 -133797464 - AluSg SINE Alu -8 302 1 243 88 0 0 chr1 108867309 108867343 -133797010 + (T)n Simple_repeat Simple_repeat 1 34 0 615 124 0 0 chr1 108867345 108867442 -133796911 - AluY SINE Alu -60 251 155 228 67 0 0 chr1 108867776 108867806 -133796547 + (T)n Simple_repeat Simple_repeat 1 30 0 1890 100 4 0 chr1 108867808 108868058 -133796295 - AluY SINE Alu -60 251 1 1768 284 27 21 chr1 108868336 108868583 -133795770 + MER69 DNA AcHobo 1 245 -2281 1648 208 3 10 chr1 108868583 108868895 -133795458 + AluJo SINE Alu 1 310 -2 1768 284 27 21 chr1 108868895 108869164 -133795189 + MER69 DNA AcHobo 245 520 -2006 235 210 57 73 chr1 108869153 108869277 -133795076 + MER69 DNA AcHobo 2030 2151 -375 * 2028 190 8 3 chr1 108869310 108869673 -133794680 + MLT1A1 LTR MaLR 1 365 0 2774 224 98 68 chr1 108869747 108871388 -133792965 + L1MEc LINE L1 1345 2999 -3216 866 199 6 6 chr1 108871388 108871549 -133792804 + AluJb SINE Alu 128 288 -24 769 255 55 13 chr1 108871553 108871863 -133792490 + L1MEc LINE L1 2997 3319 -2896 316 323 97 58 chr1 108872082 108872237 -133792116 - L2 LINE L2 0 3272 3112 267 31 0 0 chr1 108872276 108872308 -133792045 + (TAG)n Simple_repeat Simple_repeat 3 34 0 1958 142 33 35 chr1 108872308 108872675 -133791678 - THE1C LTR MaLR -9 366 1 537 265 153 14 chr1 108872725 108872940 -133791413 + MIR SINE MIR 8 252 -10 180 319 121 11 chr1 108872942 108873033 -133791320 + MIR3 SINE MIR 87 187 -21 21 36 0 0 chr1 108873827 108873855 -133790498 + AT_rich Low_complexity Low_complexity 1 28 0 266 335 72 67 chr1 108874072 108874418 -133789935 + L2 LINE L2 2335 2682 -632 921 178 57 0 chr1 108874729 108874886 -133789467 - FRAM SINE Alu -14 162 1 585 237 41 35 chr1 108875054 108875223 -133789130 + MIR SINE MIR 49 218 -44 195 369 47 7 chr1 108875308 108875457 -133788896 - L2 LINE L2 -1028 2286 2132 612 180 9 0 chr1 108875554 108875665 -133788688 + FLAM_C SINE Alu 24 135 -8 1872 187 75 27 chr1 108875733 108876172 -133788181 - MLT1C LTR MaLR 0 467 8 272 345 55 29 chr1 108876217 108876421 -133787932 - L2 LINE L2 -849 2465 2249 2588 59 0 0 chr1 108876421 108876728 -133787625 + AluY SINE Alu 1 307 -4 272 345 55 29 chr1 108876728 108876833 -133787520 - L2 LINE L2 -1065 2249 2148 1616 171 75 6 chr1 108876872 108877193 -133787160 - MER2 DNA MER2_type -1 343 1 1693 139 43 101 chr1 108877245 108877613 -133786740 - MLT2C1 LTR ERVL -50 347 1 1982 152 67 0 chr1 108877664 108878007 -133786346 - MER47A DNA MER2_type 0 366 1 302 314 107 16 chr1 108878008 108878260 -133786093 - L2 LINE L2 -1237 2077 1803 369 0 0 0 chr1 108879659 108879700 -133784653 + (CA)n Simple_repeat Simple_repeat 1 41 0 470 349 32 11 chr1 108880629 108880818 -133783535 + MIR SINE MIR 21 213 -49 1918 160 21 0 chr1 108881206 108881544 -133782809 - L1PA16 LINE L1 -16 6150 5806 1804 232 91 32 chr1 108881545 108881633 -133782720 - L1ME2 LINE L1 -33 6131 6050 1755 159 17 24 chr1 108881633 108881929 -133782424 + AluJb SINE Alu 1 294 -18 1804 232 91 32 chr1 108881929 108882753 -133781600 - L1ME2 LINE L1 -114 6050 5104 1222 203 95 16 chr1 108882756 108883125 -133781228 - MER97a DNA MER1_type? -100 794 397 1647 190 26 29 chr1 108883133 108883388 -133780965 - MER58B DNA MER1_type -2079 341 86 1990 56 8 4 chr1 108883388 108883640 -133780713 + AluY SINE Alu 1 253 -58 1647 190 26 29 chr1 108883640 108883726 -133780627 - MER58B DNA MER1_type -2334 86 1 423 287 178 49 chr1 108883752 108884118 -133780235 - L1MEd LINE L1 -5699 420 8 309 197 0 0 chr1 108884529 108884595 -133779758 + GA-rich Low_complexity Low_complexity 2 67 0 401 320 189 25 chr1 108884615 108885134 -133779219 - L2 LINE L2 -1092 2222 1619 2202 134 82 17 chr1 108885539 108885941 -133778412 + MSTA LTR MaLR 1 428 0 8554 142 25 34 chr1 108885944 108887531 -133776822 + MSTA-int LTR MaLR 4 1574 -6 2159 141 96 10 chr1 108887536 108887920 -133776433 + MSTA LTR MaLR 1 417 -11 348 344 126 44 chr1 108888184 108888915 -133775438 - L2 LINE L2 -47 3225 2429 1990 111 55 7 chr1 108889504 108889793 -133774560 + AluSg SINE Alu 1 303 -7 182 360 11 34 chr1 108891023 108891112 -133773241 + L2 LINE L2 2586 2672 -642 224 260 120 0 chr1 108892429 108892529 -133771824 - MIR SINE MIR 0 262 151 722 265 77 30 chr1 108892532 108892766 -133771587 - MIR SINE MIR 0 262 18 22 0 0 0 chr1 108893364 108893386 -133770967 + AT_rich Low_complexity Low_complexity 1 22 0 42 20 0 0 chr1 108893754 108893803 -133770550 + AT_rich Low_complexity Low_complexity 1 49 0 194 213 106 0 chr1 108893804 108893851 -133770502 - MIR SINE MIR -18 244 193 2464 192 109 40 chr1 108894172 108894869 -133769484 + L1ME3 LINE L1 5409 6153 -9 495 209 0 4 chr1 108894868 108894993 -133769360 - L1ME3 LINE L1 -295 5867 5745 * 1914 153 0 27 chr1 108895097 108895397 -133768956 - AluJo SINE Alu -20 292 1 589 322 68 0 chr1 108895750 108895986 -133768367 - MIR SINE MIR 0 262 11 647 279 116 44 chr1 108896057 108896376 -133767977 - L2 LINE L2 0 3313 2972 2542 58 0 3 chr1 108896585 108896895 -133767458 - AluY SINE Alu -2 309 1 180 349 184 26 chr1 108897798 108897950 -133766403 + L3b LINE CR1 1358 1533 -50 360 261 17 0 chr1 108898386 108898501 -133765852 + L1MC4 LINE L1 7924 8040 -2 530 346 75 63 chr1 108899225 108899723 -133764630 - L2 LINE L2 -4 3268 2766 233 373 84 0 chr1 108900009 108900151 -133764202 - L2 LINE L2 -926 2388 2235 1381 169 125 31 chr1 108900207 108900702 -133763651 - L1ME3 LINE L1 -676 5490 4965 1709 167 4 11 chr1 108903066 108903342 -133761011 - AluJb SINE Alu -38 274 1 203 311 56 11 chr1 108903527 108903617 -133760736 + MIR SINE MIR 20 113 -95 237 267 114 22 chr1 108903739 108903876 -133760477 + MIR SINE MIR 102 256 -6 434 274 207 39 chr1 108904029 108904237 -133760116 - MIR SINE MIR 0 262 20 24 0 0 0 chr1 108904237 108904261 -133760092 + AT_rich Low_complexity Low_complexity 1 24 0 2161 106 7 0 chr1 108904262 108904554 -133759799 - AluSx SINE Alu -18 294 1 360 0 0 0 chr1 108905607 108905647 -133758706 + (TG)n Simple_repeat Simple_repeat 2 41 0 302 324 101 0 chr1 108906472 108906620 -133757733 - L2 LINE L2 -500 2814 2652 629 301 181 16 chr1 108906679 108907253 -133757100 - L2 LINE L2 -817 2497 1829 201 132 105 0 chr1 108907301 108907339 -133757014 - MIR SINE MIR -125 137 96 189 176 0 0 chr1 108907352 108907386 -133756967 + L2 LINE L2 2725 2758 -556 24 0 0 0 chr1 108907925 108907949 -133756404 + AT_rich Low_complexity Low_complexity 1 24 0 696 80 35 26 chr1 108908002 108908115 -133756238 - L1MB3 LINE L1 -12 6171 6058 317 299 40 94 chr1 108908653 108908854 -133755499 - L1ME LINE L1 -440 5681 5492 2102 110 7 7 chr1 108908926 108909226 -133755127 + AluSx SINE Alu 1 300 -12 290 256 100 0 chr1 108909240 108909330 -133755023 + MARNA DNA Mariner 91 189 -397 14343 133 30 9 chr1 108910207 108910718 -133753635 + Tigger1 DNA MER2_type 1 500 -1918 2228 115 0 6 chr1 108910718 108911030 -133753323 + AluSx SINE Alu 1 310 -2 14343 133 30 9 chr1 108911030 108911100 -133753253 + Tigger1 DNA MER2_type 500 567 -1851 2374 82 0 0 chr1 108911100 108911392 -133752961 - AluY SINE Alu -19 292 1 14343 133 30 9 chr1 108911392 108913177 -133751176 + Tigger1 DNA MER2_type 567 2418 0 290 200 18 0 chr1 108913265 108913320 -133751033 + Charlie1 DNA MER1_type 2706 2761 0 620 259 11 15 chr1 108913938 108914290 -133750063 - HsTC2 DNA Tc2 -134 1764 1300 551 238 35 21 chr1 108914350 108914493 -133749860 - HsTC2 DNA Tc2 -1750 148 4 192 275 275 11 chr1 108914935 108915026 -133749327 - MIR SINE MIR -74 134 20 1617 35 0 15 chr1 108915032 108915230 -133749123 + MER107 DNA MER1_type 3 197 0 2323 101 0 3 chr1 108915264 108915572 -133748781 + AluSq SINE Alu 1 307 -6 922 216 22 0 chr1 108916404 108916585 -133747768 - MER5A DNA MER1_type -2 187 3 901 298 166 12 chr1 108917250 108917888 -133746465 - L2 LINE L2 0 3313 2583 998 228 56 16 chr1 108918348 108918674 -133745679 + L1MB8 LINE L1 5841 6178 0 2434 67 0 22 chr1 108919719 108920034 -133744319 - AluY SINE Alu -3 308 1 411 181 94 19 chr1 108920169 108920292 -133744061 - L1ME4a LINE L1 -16 6083 1199 2066 99 21 133 chr1 108921218 108921640 -133742713 - THE1C LTR MaLR 0 375 1 274 335 58 35 chr1 108922370 108922543 -133741810 - L2 LINE L2 -675 2639 2463 316 322 40 23 chr1 108923810 108923987 -133740366 - MIR SINE MIR -26 236 57 328 318 47 28 chr1 108924022 108924129 -133740224 + L2 LINE L2 3153 3261 -11 235 289 52 89 chr1 108924705 108924840 -133739513 - MIR3 SINE MIR -49 159 30 250 203 271 75 chr1 108924991 108925124 -133739229 - MIR SINE MIR -51 211 53 292 300 53 0 chr1 108925406 108925520 -133738833 + MIR SINE MIR 40 160 -63 472 273 79 0 chr1 108926396 108926535 -133737818 - MIR3 SINE MIR -17 191 42 204 280 200 10 chr1 108926847 108926947 -133737406 + MIR SINE MIR 57 175 -87 242 147 0 0 chr1 108926953 108926987 -133737366 - MER5C DNA MER1_type 0 324 291 411 280 51 0 chr1 108927044 108927162 -133737191 - MER5C DNA MER1_type -200 124 1 2061 128 0 10 chr1 108927305 108927601 -133736752 - AluY SINE Alu -18 293 1 2236 115 7 0 chr1 108927601 108927905 -133736448 - AluSq SINE Alu -7 306 1 1752 184 0 7 chr1 108927990 108928295 -133736058 - AluJb SINE Alu -9 303 1 1029 236 37 0 chr1 108928373 108928589 -133735764 + MER58A DNA MER1_type 1 224 0 428 238 225 12 chr1 108928666 108928826 -133735527 + L2 LINE L2 3119 3312 -1 1767 166 17 10 chr1 108928938 108929234 -133735119 - AluSx SINE Alu -14 298 1 2425 81 0 0 chr1 108929915 108930212 -133734141 + AluY SINE Alu 1 297 -14 248 333 39 0 chr1 108930970 108931048 -133733305 - L2 LINE L2 -4 3268 3188 312 345 34 8 chr1 108931841 108931960 -133732393 + L2 LINE L2 3151 3272 0 270 233 67 0 chr1 108932664 108932724 -133731629 + L2 LINE L2 3209 3272 0 2054 122 31 0 chr1 108932753 108933039 -133731314 + AluSx SINE Alu 1 295 -17 386 214 58 10 chr1 108933040 108933143 -133731210 + MIR SINE MIR 46 153 -109 620 148 46 0 chr1 108933161 108933269 -133731084 + MER3 DNA MER1_type 50 162 -47 1347 143 128 36 chr1 108933271 108933538 -133730815 + MER3 DNA MER1_type 2234 2544 -80 2202 89 7 10 chr1 108933538 108933829 -133730524 + AluSg1 SINE Alu 1 290 -19 1347 143 128 36 chr1 108933829 108933919 -133730434 + MER3 DNA MER1_type 2544 2624 0 516 16 0 0 chr1 108933981 108934042 -133730311 + (TA)n Simple_repeat Simple_repeat 1 61 0 2106 104 0 4 chr1 108934046 108934325 -133730028 - AluSg SINE Alu -32 278 1 1699 137 43 47 chr1 108935481 108935781 -133728572 - AluJb SINE Alu -13 299 1 1932 150 7 3 chr1 108935792 108936086 -133728267 - AluJb SINE Alu -15 297 3 1748 111 119 32 chr1 108937234 108937578 -133726775 + THE1C LTR MaLR 1 374 -1 1964 123 0 20 chr1 108938702 108939030 -133725323 - AluSx SINE Alu 0 312 1 429 263 85 0 chr1 108939145 108939263 -133725090 + L1ME LINE L1 3 130 -5940 496 280 31 95 chr1 108939306 108939631 -133724722 + L1ME LINE L1 228 531 -5539 302 252 43 58 chr1 108939837 108940103 -133724250 + L1ME LINE L1 655 855 -5215 489 271 43 32 chr1 108940139 108940419 -133723934 + L1ME LINE L1 864 1146 -4832 249 209 45 15 chr1 108940750 108940817 -133723536 - L1MD2 LINE L1 -272 6087 6019 2113 228 118 18 chr1 108940819 108941170 -133723183 - L1ME1 LINE L1 -340 6086 5771 2182 104 3 3 chr1 108941170 108941467 -133722886 - AluSp SINE Alu -16 297 1 2113 228 118 18 chr1 108941467 108942255 -133722098 - L1ME1 LINE L1 -655 5771 4817 1554 206 81 85 chr1 108942230 108943041 -133721312 - L1ME1 LINE L1 -4860 1546 772 * 261 75 0 0 chr1 108944177 108944217 -133720136 + (T)n Simple_repeat Simple_repeat 1 40 0 23 33 0 0 chr1 108946437 108946467 -133717886 + AT_rich Low_complexity Low_complexity 1 30 0 412 241 102 17 chr1 108947736 108947891 -133716462 + MIR SINE MIR 23 192 -62 195 119 179 60 chr1 108947948 108948015 -133716338 + MIR SINE MIR 178 252 -10 231 36 0 0 chr1 108948126 108948154 -133716199 + (T)n Simple_repeat Simple_repeat 1 28 0 579 299 31 31 chr1 108948948 108949142 -133715211 + MIR3 SINE MIR 3 196 -12 2148 120 0 13 chr1 108949537 108949853 -133714500 + AluSq SINE Alu 1 312 -1 207 0 0 0 chr1 108951735 108951758 -133712595 + (A)n Simple_repeat Simple_repeat 1 23 0 2356 97 0 0 chr1 108951761 108952070 -133712283 + AluSc SINE Alu 1 309 0 204 235 0 0 chr1 108952405 108952456 -133711897 + A-rich Low_complexity Low_complexity 1 51 0 1536 234 68 67 chr1 108953225 108953354 -133710999 + L2 LINE L2 1581 1708 -1606 892 98 0 0 chr1 108953354 108953477 -133710876 + L1PB4 LINE L1 6021 6143 -13 1536 234 68 67 chr1 108953477 108953902 -133710451 + L2 LINE L2 1708 2136 -1178 518 266 16 49 chr1 108953959 108954143 -133710210 + L2 LINE L2 3131 3308 -5 195 278 0 56 chr1 108954735 108954789 -133709564 - L2 LINE L2 0 3272 3222 249 274 32 0 chr1 108955940 108956002 -133708351 + MIR SINE MIR 193 256 -6 29 47 0 0 chr1 108957568 108957611 -133706742 + AT_rich Low_complexity Low_complexity 1 43 0 2229 121 0 0 chr1 108959108 108959405 -133704948 - AluSx SINE Alu -15 297 1 1500 267 72 42 chr1 108959405 108960027 -133704326 - L1MC4 LINE L1 -4 8038 7398 1376 123 209 55 chr1 108960084 108960376 -133703977 + MER1B DNA MER1_type 1 337 0 2188 97 0 10 chr1 108960983 108961282 -133703071 - AluY SINE Alu -15 296 1 1406 164 29 0 chr1 108961347 108961591 -133702762 - AluJo SINE Alu -18 294 44 235 178 0 0 chr1 108961853 108961898 -133702455 + MLT1J LTR MaLR 430 474 -37 623 164 9 0 chr1 108961922 108962038 -133702315 - AluSg/x SINE Alu -44 268 152 401 266 156 0 chr1 108962323 108962432 -133701921 - L2 LINE L2 0 3313 3188 21 36 0 0 chr1 108962971 108962999 -133701354 + AT_rich Low_complexity Low_complexity 1 28 0 287 311 67 80 chr1 108964439 108964815 -133699538 + L2 LINE L2 2584 2954 -360 246 272 180 53 chr1 108964856 108965062 -133699291 + L2 LINE L2 3080 3311 -2 1173 286 45 83 chr1 108965251 108965970 -133698383 - MER21B LTR ERV1 -149 714 24 1777 111 44 0 chr1 108965976 108966254 -133698099 - AluSx SINE Alu 0 311 23 26 30 0 0 chr1 108966726 108966759 -133697594 + AT_rich Low_complexity Low_complexity 1 33 0 204 40 0 0 chr1 108967831 108967856 -133696497 + (CA)n Simple_repeat Simple_repeat 1 25 0 373 162 176 59 chr1 108968141 108968277 -133696076 + L1ME4a LINE L1 5966 6117 -4 1648 288 129 37 chr1 108968521 108969410 -133694943 + L2 LINE L2 312 1282 -2032 859 240 269 27 chr1 108969410 108969823 -133694530 + L2 LINE L2 1765 2277 -1037 852 254 159 26 chr1 108969846 108970185 -133694168 + L2 LINE L2 2845 3228 -85 1939 164 132 0 chr1 108970327 108970692 -133693661 + MSTA LTR MaLR 1 413 -15 1434 303 115 33 chr1 108971043 108972000 -133692353 + L2 LINE L2 2189 3227 -86 186 43 0 0 chr1 108972254 108972277 -133692076 + (T)n Simple_repeat Simple_repeat 1 23 0 358 309 74 118 chr1 108972412 108972935 -133691418 - L2 LINE L2 -197 3075 2564 1724 188 0 3 chr1 108973145 108973443 -133690910 - AluJo SINE Alu -9 303 7 21 36 0 0 chr1 108973488 108973516 -133690837 + AT_rich Low_complexity Low_complexity 1 28 0 2655 19 7 3 chr1 108973629 108973939 -133690414 + AluY SINE Alu 1 311 0 2064 121 0 38 chr1 108974679 108974994 -133689359 + AluSx SINE Alu 1 303 -9 30 69 0 0 chr1 108975811 108975869 -133688484 + AT_rich Low_complexity Low_complexity 1 58 0 26 30 0 0 chr1 108976354 108976387 -133687966 + AT_rich Low_complexity Low_complexity 1 33 0 183 42 0 0 chr1 108977702 108977726 -133686627 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2324 139 6 117 chr1 108977940 108978409 -133685944 + MER47B DNA MER2_type 1 417 -1 365 232 98 9 chr1 108978472 108978584 -133685769 - FLAM_A SINE Alu -11 122 1 31 0 0 0 chr1 108978989 108979020 -133685333 + AT_rich Low_complexity Low_complexity 1 31 0 263 254 42 0 chr1 108979727 108979798 -133684555 + Charlie2 DNA MER1_type 2786 2859 -3 5429 157 32 47 chr1 108979856 108980063 -133684290 + L1MA10 LINE L1 5111 5320 -1014 2481 85 21 74 chr1 108980063 108980456 -133683897 + L1MA1 LINE L1 5892 6262 -40 2049 106 3 3 chr1 108980456 108980760 -133683593 + AluSg SINE Alu 1 304 0 2481 85 21 74 chr1 108980760 108980799 -133683554 + L1MA1 LINE L1 6262 6302 0 5429 157 32 47 chr1 108980799 108981666 -133682687 + L1MA10 LINE L1 5320 6168 -166 911 107 0 30 chr1 108981666 108981835 -133682518 + (GAAA)n Simple_repeat Simple_repeat 4 167 0 5429 157 32 47 chr1 108981835 108981992 -133682361 + L1MA10 LINE L1 6168 6326 -8 776 125 0 0 chr1 108981997 108982109 -133682244 - AluSg/x SINE Alu -18 294 183 202 280 27 27 chr1 108982126 108982201 -133682152 + MIR3 SINE MIR 134 208 0 21 36 0 0 chr1 108982307 108982335 -133682018 + AT_rich Low_complexity Low_complexity 1 28 0 1754 112 49 3 chr1 108982593 108982879 -133681474 + L1MA2 LINE L1 6006 6304 0 398 262 19 19 chr1 108983559 108983662 -133680691 - L2 LINE L2 0 3313 3211 1124 187 15 0 chr1 108984050 108984253 -133680100 - AluJb SINE Alu -17 295 90 758 196 0 0 chr1 108984266 108984399 -133679954 - FLAM_C SINE Alu 0 133 1 22 35 0 0 chr1 108985014 108985043 -133679310 + AT_rich Low_complexity Low_complexity 1 29 0 2080 109 3 13 chr1 108985101 108985403 -133678950 + AluSx SINE Alu 13 311 -1 186 167 0 0 chr1 108987485 108987521 -133676832 + (TATG)n Simple_repeat Simple_repeat 2 37 0 261 0 0 0 chr1 108987868 108987897 -133676456 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr1 108988155 108988184 -133676169 + AT_rich Low_complexity Low_complexity 1 29 0 197 340 19 58 chr1 108988543 108988646 -133675707 + L2 LINE L2 3200 3298 -15 231 348 6 28 chr1 108988792 108989050 -133675303 + GA-rich Low_complexity Low_complexity 1 252 0 * 318 268 110 69 chr1 108988847 108989138 -133675215 + L1M4c LINE L1 1001 1303 -5081 280 255 16 54 chr1 108989138 108989322 -133675031 + GA-rich Low_complexity Low_complexity 3 179 0 453 200 295 0 chr1 108989753 108989953 -133674400 + L1ME3A LINE L1 5905 6163 -7 1444 249 131 39 chr1 108990547 108991760 -133672593 + L1MCc LINE L1 816 2136 -4805 478 221 97 19 chr1 108991747 108991901 -133672452 + L1MCc LINE L1 2637 2802 -4320 * 742 259 34 78 chr1 108991937 108992257 -133672096 + L1MCc LINE L1 734 1039 -5384 936 227 81 22 chr1 108992285 108992708 -133671645 + L1MCc LINE L1 1236 1679 -4887 709 254 71 38 chr1 108992722 108992962 -133671391 + MIR SINE MIR 13 260 -2 2325 168 66 7 chr1 108994018 108994459 -133669894 + MLT1C LTR MaLR 1 467 0 216 0 0 0 chr1 108994525 108994549 -133669804 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr1 108994629 108994662 -133669691 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr1 108994949 108994985 -133669368 + AT_rich Low_complexity Low_complexity 1 36 0 1981 131 38 0 chr1 108995196 108995486 -133668867 + AluSx SINE Alu 1 301 -11 928 228 84 39 chr1 108995610 108996026 -133668327 + L1MC5 LINE L1 7474 7908 -53 180 0 0 0 chr1 108997233 108997253 -133667100 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 246 263 138 31 chr1 108997364 108997524 -133666829 + L1M4 LINE L1 3909 4085 -2061 567 332 70 16 chr1 108997556 108997812 -133666541 + L3 LINE CR1 1298 1567 -10 215 311 60 25 chr1 108998282 108998392 -133665961 + MIR SINE MIR 2 111 -97 504 117 32 75 chr1 108998455 108998643 -133665710 + (TA)n Simple_repeat Simple_repeat 1 180 0 2565 304 150 27 chr1 108998655 108999069 -133665284 + L2 LINE L2 1192 1553 -1760 580 199 228 6 chr1 108999069 108999240 -133665113 - MER3 DNA MER1_type 0 209 1 2565 304 150 27 chr1 108999240 109000693 -133663660 + L2 LINE L2 1553 3309 -4 2470 51 0 29 chr1 109001610 109001923 -133662430 + AluY SINE Alu 1 304 -7 227 239 239 0 chr1 109002023 109002090 -133662263 + MER5B DNA MER1_type 72 154 -24 339 343 49 0 chr1 109002372 109002474 -133661879 + L2 LINE L2 3164 3270 -2 299 347 118 68 chr1 109002813 109003023 -133661330 + L2 LINE L2 2443 2641 -631 1267 267 111 35 chr1 109003023 109003573 -133660780 + MLT1E LTR MaLR 2 593 0 299 347 118 68 chr1 109003573 109004127 -133660226 + L2 LINE L2 2641 3236 -36 217 61 61 20 chr1 109004248 109004297 -133660056 + (TAAAG)n Simple_repeat Simple_repeat 2 52 0 2455 64 0 0 chr1 109004396 109004692 -133659661 + AluY SINE Alu 1 296 -15 407 293 136 14 chr1 109005244 109005384 -133658969 + MIR3 SINE MIR 34 190 -18 300 339 45 0 chr1 109005654 109005766 -133658587 - MIR SINE MIR -62 146 30 294 308 13 0 chr1 109005784 109005862 -133658491 - L2 LINE L2 -10 3303 3225 26 74 0 0 chr1 109006665 109006719 -133657634 + AT_rich Low_complexity Low_complexity 1 54 0 32 26 0 0 chr1 109007915 109007954 -133656399 + AT_rich Low_complexity Low_complexity 1 39 0 399 220 18 107 chr1 109008443 109008611 -133655742 - MIR SINE MIR -50 212 60 193 284 119 0 chr1 109008707 109008774 -133655579 + L2 LINE L2 3198 3272 0 1673 170 184 8 chr1 109009577 109009941 -133654412 - MSTA LTR MaLR 0 428 1 917 170 35 30 chr1 109010440 109010640 -133653713 - MIR SINE MIR -32 230 30 2111 154 111 19 chr1 109010668 109011083 -133653270 - MLT1D LTR MaLR -45 460 8 1373 230 56 41 chr1 109011672 109012085 -133652268 + LTR16C LTR ERVL 73 491 0 19146 120 25 8 chr1 109012755 109015761 -133648592 + L1PA10 LINE L1 41 3098 -3048 15438 63 14 12 chr1 109015761 109018597 -133645756 + L1PA10 LINE L1 3326 6168 0 1551 222 38 90 chr1 109018623 109019213 -133645140 + L2 LINE L2 2756 3312 -1 39 0 0 0 chr1 109019772 109019811 -133644542 + AT_rich Low_complexity Low_complexity 1 39 0 861 133 0 30 chr1 109019965 109020100 -133644253 - FLAM_C SINE Alu -2 131 1 25 65 0 0 chr1 109020271 109020317 -133644036 + AT_rich Low_complexity Low_complexity 1 46 0 693 209 0 0 chr1 109020716 109020831 -133643522 + FLAM_A SINE Alu 1 115 -18 543 216 20 0 chr1 109020944 109021046 -133643307 - MER81 DNA DNA 0 114 11 234 260 39 87 chr1 109021417 109021521 -133642832 - MIR SINE MIR -142 120 22 2314 113 0 0 chr1 109022175 109022477 -133641876 - AluSg SINE Alu -8 302 1 1667 142 58 14 chr1 109022770 109023045 -133641308 + AluJb SINE Alu 3 289 -23 312 231 32 139 chr1 109023107 109023358 -133640995 - L1MC4a LINE L1 -1785 6023 5800 4386 146 123 8 chr1 109023375 109024043 -133640310 + MER21B LTR ERV1 1 771 -92 2820 112 203 0 chr1 109024043 109024571 -133639782 + LTR24C LTR ERV1 1 635 0 4386 146 123 8 chr1 109024571 109024676 -133639677 + MER21B LTR ERV1 771 863 0 1335 263 56 5 chr1 109024680 109025057 -133639296 - L1MC4a LINE L1 -2057 5751 5356 374 285 8 0 chr1 109025742 109025865 -133638488 + (TGG)n Simple_repeat Simple_repeat 1 124 0 21 0 0 0 chr1 109026432 109026453 -133637900 + AT_rich Low_complexity Low_complexity 1 21 0 317 285 51 68 chr1 109026461 109027023 -133637330 - L1MC4a LINE L1 -814 5332 4797 328 267 24 91 chr1 109027077 109027242 -133637111 - L1MC4a LINE L1 -1444 4702 4549 2319 72 0 42 chr1 109027246 109027553 -133636800 - AluY SINE Alu -17 294 1 439 298 74 27 chr1 109027667 109028070 -133636283 - L1MC4a LINE L1 -1738 4408 3987 * 662 117 23 12 chr1 109028068 109028260 -133636093 + L1PA16 LINE L1 5930 6157 -9 1251 214 75 10 chr1 109028269 109028634 -133635719 + MLT1E1 LTR MaLR 208 654 0 2916 161 97 59 chr1 109028822 109029869 -133634484 + L1MB3 LINE L1 4594 5686 -497 2001 148 29 19 chr1 109030150 109030529 -133633824 + L1MB3 LINE L1 5795 6177 -6 1385 271 30 73 chr1 109030738 109031328 -133633025 + Charlie2 DNA MER1_type 26 590 -2272 671 187 27 59 chr1 109031849 109032036 -133632317 + Charlie2a DNA MER1_type 1480 1660 -1202 723 112 0 52 chr1 109032089 109032205 -133632148 - AluJb SINE Alu -13 299 190 216 111 0 0 chr1 109032403 109032439 -133631914 + (TA)n Simple_repeat Simple_repeat 1 36 0 1720 122 23 66 chr1 109033257 109033768 -133630585 + L1PA5 LINE L1 5721 6154 0 2454 81 0 0 chr1 109033904 109034212 -133630141 + AluSc SINE Alu 1 308 -1 2382 94 0 0 chr1 109034746 109035045 -133629308 - AluSx SINE Alu -13 299 1 204 228 0 139 chr1 109035933 109036012 -133628341 + L2 LINE L2 3199 3266 -6 883 155 91 5 chr1 109036102 109036289 -133628064 - MER105 DNA DNA -1 203 1 840 154 83 13 chr1 109039456 109039612 -133624741 - AluJb SINE Alu -9 303 137 513 211 46 18 chr1 109041404 109041513 -133622840 - L2 LINE L2 -1 3271 3160 1327 231 59 111 chr1 109042435 109043011 -133621342 - MLT2B3 LTR ERVL -8 546 1 1252 126 38 53 chr1 109043011 109043076 -133621277 - HERVL-B3 LTR ERVL 0 5654 5590 2770 165 86 50 chr1 109043076 109043778 -133620575 + LTR8A LTR ERV1 1 727 0 1252 126 38 53 chr1 109043778 109043974 -133620379 - HERVL-B3 LTR ERVL -64 5590 5397 6270 121 22 8 chr1 109044074 109045047 -133619306 + THE1C-int LTR MaLR 595 1580 0 2193 141 39 3 chr1 109045047 109045409 -133618944 + THE1C LTR MaLR 1 375 0 2550 164 8 22 chr1 109045742 109046231 -133618122 - L1MB2 LINE L1 0 6171 5690 1053 72 7 7 chr1 109046474 109046613 -133617740 + AluY SINE Alu 1 139 -172 1291 83 42 5 chr1 109046713 109046905 -133617448 + AluY SINE Alu 106 304 -7 344 296 70 17 chr1 109047117 109047232 -133617121 + L2 LINE L2 3185 3305 -8 219 69 0 0 chr1 109047715 109047744 -133616609 + (CAT)n Simple_repeat Simple_repeat 1 29 0 233 229 42 0 chr1 109047959 109048007 -133616346 + MER117 DNA MER1_type 34 83 -114 218 313 83 49 chr1 109049847 109049991 -133614362 - L2 LINE L2 -204 3068 2920 2930 137 23 55 chr1 109050770 109051376 -133612977 + L1MB7 LINE L1 5566 6152 -32 409 308 26 82 chr1 109051500 109051695 -133612658 + MIR3 SINE MIR 16 199 -9 1411 204 13 23 chr1 109051756 109052064 -133612289 - AluJo SINE Alu -7 305 1 1291 188 9 0 chr1 109052205 109052418 -133611935 - MER20 DNA MER1_type 0 219 5 2338 145 0 0 chr1 109052432 109052769 -133611584 - MER1B DNA MER1_type 0 337 1 268 356 61 15 chr1 109055662 109055794 -133608559 + MIR SINE MIR 20 157 -105 452 280 35 49 chr1 109055812 109056116 -133608237 + L2 LINE L2 2736 3313 0 204 40 0 0 chr1 109058189 109058214 -133606139 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 270 0 0 0 chr1 109059243 109059273 -133605080 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 100 0 0 chr1 109059475 109059545 -133604808 + AT_rich Low_complexity Low_complexity 1 70 0 401 305 150 28 chr1 109062565 109062778 -133601575 - MIR SINE MIR -21 241 3 2715 214 10 8 chr1 109062935 109063542 -133600811 + L1ME1 LINE L1 5554 6161 -5 316 308 47 9 chr1 109063691 109063798 -133600555 + MIR SINE MIR 34 144 -64 1212 178 228 8 chr1 109064846 109065240 -133599113 - Charlie4a DNA MER1_type 0 508 28 540 30 0 0 chr1 109065382 109065448 -133598905 + (TC)n Simple_repeat Simple_repeat 1 66 0 921 143 0 0 chr1 109065468 109065601 -133598752 + FLAM_C SINE Alu 1 133 0 824 320 126 27 chr1 109065621 109066336 -133598017 + L2 LINE L2 1798 2583 -731 638 270 44 20 chr1 109066370 109066574 -133597779 - MIR SINE MIR -31 231 23 253 309 177 31 chr1 109066762 109066868 -133597485 + L2 LINE L2 2830 2919 -353 2151 122 5 106 chr1 109066868 109067302 -133597051 - MLT1B LTR MaLR 0 390 1 253 309 177 31 chr1 109067302 109067551 -133596802 + L2 LINE L2 2919 3237 -35 1091 303 145 32 chr1 109067616 109068200 -133596153 - L2 LINE L2 -41 3272 2565 1116 167 9 48 chr1 109068200 109068427 -133595926 + MER20 DNA MER1_type 2 219 0 1091 303 145 32 chr1 109068427 109068624 -133595729 - L2 LINE L2 -748 2565 2392 339 347 33 0 chr1 109068630 109068780 -133595573 - L2 LINE L2 -1082 2232 2078 613 324 52 27 chr1 109068780 109069181 -133595172 - L2 LINE L2 -1710 1604 1194 495 298 86 13 chr1 109069362 109069513 -133594840 - MIR SINE MIR -89 173 12 1539 143 213 14 chr1 109070155 109070512 -133593841 + MSTA LTR MaLR 1 428 0 183 80 0 0 chr1 109070630 109070655 -133593698 + (T)n Simple_repeat Simple_repeat 1 25 0 322 257 54 0 chr1 109071130 109071204 -133593149 - L2 LINE L2 -7 3265 3188 337 268 36 18 chr1 109071438 109071550 -133592803 + MIR SINE MIR 28 141 -121 881 232 152 0 chr1 109071570 109071794 -133592559 + MIR SINE MIR 2 259 -3 262 281 56 11 chr1 109071826 109071915 -133592438 + MIR SINE MIR 156 248 -14 831 279 60 15 chr1 109071995 109072264 -133592089 + L2 LINE L2 2697 2977 -337 235 254 186 21 chr1 109072269 109072385 -133591968 + L1M4 LINE L1 2956 3052 -3094 2387 100 0 0 chr1 109072385 109072694 -133591659 + AluY SINE Alu 1 309 -2 235 254 186 21 chr1 109072694 109072813 -133591540 + L1M4 LINE L1 3052 3230 -2916 1766 170 3 3 chr1 109072820 109073125 -133591228 + AluJo SINE Alu 1 305 0 7786 161 16 12 chr1 109073148 109074595 -133589758 + L1PA16 LINE L1 3589 5043 -1123 2203 142 3 0 chr1 109074595 109074906 -133589447 + AluJb SINE Alu 1 312 0 7786 161 16 12 chr1 109074906 109076033 -133588320 + L1PA16 LINE L1 5043 6164 -2 503 278 40 6 chr1 109076033 109076206 -133588147 + L1M4 LINE L1 3222 3400 -2746 1052 214 0 20 chr1 109076206 109076407 -133587946 + AluJo SINE Alu 1 197 -115 192 125 0 0 chr1 109076463 109076495 -133587858 + (TG)n Simple_repeat Simple_repeat 2 33 0 789 264 40 34 chr1 109076538 109076891 -133587462 + L1M4 LINE L1 3490 3844 -2302 23 33 0 0 chr1 109077873 109077903 -133586450 + AT_rich Low_complexity Low_complexity 1 30 0 864 285 13 9 chr1 109078280 109078508 -133585845 + MIR SINE MIR 33 261 -1 297 340 46 20 chr1 109078903 109079056 -133585297 + MIR SINE MIR 88 244 -18 23 0 0 0 chr1 109079133 109079156 -133585197 + AT_rich Low_complexity Low_complexity 1 23 0 468 272 224 0 chr1 109080040 109080187 -133584166 + MER5A DNA MER1_type 10 189 0 379 329 108 45 chr1 109080927 109081149 -133583204 + L2 LINE L2 3035 3270 -2 531 282 172 0 chr1 109081230 109081439 -133582914 - L3 LINE CR1 -36 1541 1297 227 359 15 23 chr1 109082775 109082906 -133581447 + L2 LINE L2 3178 3307 -6 248 135 0 19 chr1 109083399 109083451 -133580902 + (TA)n Simple_repeat Simple_repeat 1 51 0 676 200 8 8 chr1 109084067 109084197 -133580156 - L2 LINE L2 0 3313 3184 29268 116 9 58 chr1 109084616 109091000 -133573353 + L1PA7 LINE L1 12 6073 -81 286 98 0 0 chr1 109090998 109091039 -133573314 + L1P3 LINE L1 5807 5847 -325 * 379 220 42 17 chr1 109091122 109091240 -133573113 + MLT2F LTR ERVL 543 663 0 2416 193 29 74 chr1 109091801 109092501 -133571852 - LTR8 LTR ERV1 -8 683 16 1735 198 23 6 chr1 109092927 109093275 -133571078 + MLT1A1 LTR MaLR 12 365 0 312 27 0 0 chr1 109093324 109093361 -133570992 + (TG)n Simple_repeat Simple_repeat 2 38 0 27 0 0 0 chr1 109093376 109093403 -133570950 + AT_rich Low_complexity Low_complexity 1 27 0 2139 128 0 0 chr1 109093448 109093737 -133570616 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr1 109093737 109093759 -133570594 + AT_rich Low_complexity Low_complexity 1 22 0 2061 131 131 11 chr1 109095047 109095428 -133568925 - MSTA LTR MaLR -1 427 1 259 149 0 0 chr1 109095955 109095999 -133568354 - MIR SINE MIR -92 116 74 316 271 186 7 chr1 109096103 109096243 -133568110 - MIR SINE MIR -64 198 34 355 236 6 143 chr1 109097189 109097371 -133566982 - MER5B DNA MER1_type -4 174 18 459 315 123 8 chr1 109098981 109099216 -133565137 - MIR SINE MIR 0 262 1 3294 93 4 13 chr1 109099656 109100127 -133564226 + L1PA10 LINE L1 5686 6152 -16 10131 156 72 50 chr1 109100692 109103197 -133561156 + L1MCa LINE L1 1 2555 -3871 1458 273 94 7 chr1 109103187 109104142 -133560211 + L1MEc LINE L1 1708 2711 -3504 * 345 138 0 17 chr1 109104141 109104199 -133560154 - L1PA7 LINE L1 -131 6023 5967 * 33052 100 12 29 chr1 109104589 109110687 -133553666 - L1PA7 LINE L1 -152 6002 11 1132 216 62 36 chr1 109110739 109111187 -133553166 + L1MEc LINE L1 2851 3310 -2905 828 180 87 0 chr1 109111189 109111350 -133553003 + MER20 DNA MER1_type 1 175 -44 1252 264 91 4 chr1 109111442 109111946 -133552407 + L1MEc LINE L1 3884 4431 -1784 505 343 56 15 chr1 109111981 109112249 -133552104 + L2 LINE L2 1729 2007 -1307 25 31 0 0 chr1 109112249 109112281 -133552072 + AT_rich Low_complexity Low_complexity 1 32 0 2496 99 11 3 chr1 109112281 109112646 -133551707 - L1PB1 LINE L1 -2 6149 5782 760 164 0 27 chr1 109112646 109112829 -133551524 + (TA)n Simple_repeat Simple_repeat 1 178 0 934 92 20 7 chr1 109112829 109112981 -133551372 - L1PB1 LINE L1 -360 5791 5638 13715 213 19 8 chr1 109113124 109114393 -133549960 - L1P5 LINE L1 -471 6322 5069 204 40 0 0 chr1 109114393 109114418 -133549935 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 13715 213 19 8 chr1 109114418 109117230 -133547123 - L1P5 LINE L1 -1724 5069 2151 23 0 0 0 chr1 109117335 109117358 -133546995 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr1 109118141 109118191 -133546162 + AT_rich Low_complexity Low_complexity 1 50 0 936 347 36 24 chr1 109119511 109120234 -133544119 + ERVL LTR ERVL 3256 3987 -1777 408 327 91 0 chr1 109120268 109120467 -133543886 + ERVL LTR ERVL 4068 4284 -1201 21 0 0 75 chr1 109120606 109120646 -133543707 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr1 109120803 109120825 -133543528 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 109121137 109121168 -133543185 + AT_rich Low_complexity Low_complexity 1 31 0 563 306 160 7 chr1 109121256 109121531 -133542822 + L2 LINE L2 2521 2837 -477 509 330 128 48 chr1 109121685 109121817 -133542536 + L2 LINE L2 2818 2938 -334 2131 113 7 10 chr1 109121817 109122110 -133542243 - AluSx SINE Alu -20 292 1 509 330 128 48 chr1 109122110 109122284 -133542069 + L2 LINE L2 2938 3097 -175 1463 124 27 4 chr1 109122284 109122509 -133541844 - MER30 DNA MER1_type 0 230 1 509 330 128 48 chr1 109122509 109122622 -133541731 + L2 LINE L2 3097 3272 0 2142 125 0 6 chr1 109123102 109123438 -133540915 + MER44D DNA MER2_type 1 604 -5 482 251 20 47 chr1 109123567 109123742 -133540611 - MIR SINE MIR -24 238 3 1904 130 22 0 chr1 109125329 109125632 -133538721 + AluSx SINE Alu 1 309 0 2706 70 0 32 chr1 109126997 109127399 -133536954 - MER11A LTR ERVK 0 1266 878 7824 37 3 0 chr1 109127399 109128408 -133535945 - L1PA4 LINE L1 -774 5372 4361 6568 28 4 0 chr1 109128408 109129185 -133535168 + L1PA4 LINE L1 5373 6153 -2 23 0 0 0 chr1 109129187 109129210 -133535143 + AT_rich Low_complexity Low_complexity 1 23 0 3092 96 53 13 chr1 109129210 109129839 -133534514 - MER11A LTR ERVK -514 722 2 423 0 0 0 chr1 109129841 109129888 -133534465 + (TG)n Simple_repeat Simple_repeat 2 48 0 894 255 25 60 chr1 109131405 109131773 -133532580 + MLT1I LTR MaLR 2 356 -53 380 284 78 9 chr1 109132409 109132525 -133531828 - MIR SINE MIR -129 133 10 1067 200 82 33 chr1 109132566 109132939 -133531414 - MSTC LTR MaLR 0 428 1 1711 125 0 4 chr1 109133097 109133367 -133530986 - AluSq SINE Alu 0 316 48 702 189 26 0 chr1 109134343 109134496 -133529857 - L1MA10 LINE L1 0 6334 6178 535 320 61 68 chr1 109134497 109134791 -133529562 + L2 LINE L2 2976 3267 -5 2221 111 0 7 chr1 109136021 109136328 -133528025 - AluSx SINE Alu -7 305 1 22 0 0 0 chr1 109136617 109136639 -133527714 + AT_rich Low_complexity Low_complexity 1 22 0 192 188 43 0 chr1 109137767 109137836 -133526517 + CT-rich Low_complexity Low_complexity 2 73 0 451 292 50 6 chr1 109137883 109138044 -133526309 + L2 LINE L2 2331 2498 -816 618 268 113 48 chr1 109138055 109138455 -133525898 + LTR33A LTR ERVL 7 432 -91 363 310 16 16 chr1 109138467 109138596 -133525757 - MLT1L LTR MaLR -369 246 118 2161 155 17 6 chr1 109138620 109138981 -133525372 + MLT1A1 LTR MaLR 1 365 0 273 266 37 84 chr1 109139485 109139699 -133524654 + L1ME3A LINE L1 5967 6170 0 2166 117 0 0 chr1 109139760 109140058 -133524295 + AluSg SINE Alu 5 302 -8 264 30 0 0 chr1 109140816 109140849 -133523504 + (CA)n Simple_repeat Simple_repeat 2 34 0 2215 213 115 49 chr1 109141076 109141744 -133522609 + MER72 LTR ERV1 1 712 -10 25 51 0 0 chr1 109142125 109142164 -133522189 + AT_rich Low_complexity Low_complexity 1 39 0 310 308 57 26 chr1 109142361 109142588 -133521765 + L1ME4a LINE L1 5649 5882 -239 425 55 0 0 chr1 109142744 109142799 -133521554 - MLT2A1 LTR ERVL 0 444 390 3023 76 0 2 chr1 109142863 109143257 -133521096 - MLT2A1 LTR ERVL -51 393 1 2258 144 87 7 chr1 109144232 109144691 -133519662 + LTR54B LTR ERV1 1 496 -2 1844 294 165 27 chr1 109144787 109145345 -133519008 - L2 LINE L2 -7 3306 2827 2236 111 73 14 chr1 109145345 109145689 -133518664 + THE1B LTR MaLR 1 364 0 11420 94 10 1 chr1 109145689 109147255 -133517098 + THE1B-int LTR MaLR 1 1580 0 2101 128 76 15 chr1 109147255 109147598 -133516755 + THE1B LTR MaLR 1 364 0 1844 294 165 27 chr1 109147598 109148498 -133515855 - L2 LINE L2 -485 2828 1635 27 49 0 0 chr1 109148536 109148577 -133515776 + AT_rich Low_complexity Low_complexity 1 41 0 3683 54 2 0 chr1 109148650 109149111 -133515242 - L1PA5 LINE L1 -3 6151 5690 225 348 82 51 chr1 109149177 109149335 -133515018 - MIR SINE MIR -85 177 15 763 346 39 31 chr1 109149464 109149979 -133514374 + L1ME LINE L1 3 521 -5549 856 280 90 52 chr1 109150142 109151027 -133513326 + L1ME LINE L1 571 1489 -4772 1007 239 14 18 chr1 109151050 109151335 -133513018 + L1MB4 LINE L1 4577 4860 -1286 * 4616 141 79 15 chr1 109151333 109151370 -133512983 - L1MA5 LINE L1 0 6300 6267 1963 182 68 79 chr1 109151370 109151930 -133512423 - MLT2B3 LTR ERVL 0 554 1 4616 141 79 15 chr1 109151930 109152765 -133511588 - L1MA5 LINE L1 -33 6267 5372 1930 230 19 4 chr1 109152765 109153247 -133511106 + L1MB4 LINE L1 4843 5331 -815 1378 125 0 0 chr1 109153248 109153440 -133510913 + AluSx SINE Alu 1 192 -120 3927 187 30 33 chr1 109153541 109154397 -133509956 + L1MB4 LINE L1 5325 6178 -2 1531 240 93 47 chr1 109154417 109155378 -133508975 + L1ME LINE L1 1492 2453 -3627 1818 245 50 45 chr1 109155434 109155531 -133508822 + L1ME LINE L1 4457 4552 -1546 471 18 0 0 chr1 109155531 109155587 -133508766 + (TG)n Simple_repeat Simple_repeat 1 56 0 2006 100 30 0 chr1 109155587 109155858 -133508495 - AluSx SINE Alu -33 279 1 1818 245 50 45 chr1 109155858 109156900 -133507453 + L1ME LINE L1 4551 5603 -495 603 337 121 55 chr1 109156943 109157354 -133506999 + L2 LINE L2 1769 2152 -1162 2264 141 3 3 chr1 109157354 109157702 -133506651 + MER7A DNA MER2_type 1 346 0 603 337 121 55 chr1 109157702 109158126 -133506227 + L2 LINE L2 2152 2659 -655 258 147 59 49 chr1 109158309 109158411 -133505942 + (TTAA)n Simple_repeat Simple_repeat 2 104 0 6509 135 15 14 chr1 109158749 109160180 -133504173 - L1MA5A LINE L1 0 6297 4867 229 284 196 0 chr1 109160739 109160887 -133503466 + L2 LINE L2 1915 2091 -1223 275 332 138 12 chr1 109161212 109161465 -133502888 + L2 LINE L2 2536 2820 -494 221 227 0 0 chr1 109161535 109161579 -133502774 - MIR SINE MIR 0 262 219 533 268 117 30 chr1 109162078 109162309 -133502044 - L3 LINE CR1 -303 1274 1024 2105 119 0 3 chr1 109163320 109163614 -133500739 - AluSx SINE Alu -19 293 1 246 360 27 13 chr1 109163787 109163937 -133500416 - L1ME LINE L1 -584 5582 5431 313 335 106 0 chr1 109163974 109164162 -133500191 - L1ME LINE L1 -754 5392 5185 34 72 0 0 chr1 109164173 109164242 -133500111 + AT_rich Low_complexity Low_complexity 1 69 0 466 323 100 47 chr1 109164243 109164624 -133499729 - L1ME LINE L1 -1665 4481 4081 318 305 66 43 chr1 109164644 109164946 -133499407 - L1ME LINE L1 -2212 3934 3626 270 312 87 69 chr1 109164991 109165120 -133499233 - MER5B DNA MER1_type -2 176 42 2412 56 0 13 chr1 109165120 109165424 -133498929 + AluY SINE Alu 1 300 -11 270 312 87 69 chr1 109165424 109165467 -133498886 - MER5B DNA MER1_type -136 42 1 537 324 165 25 chr1 109165563 109166162 -133498191 - L1ME LINE L1 -2689 3457 2775 2123 206 73 0 chr1 109166847 109167313 -133497040 - MLT1D LTR MaLR -3 502 3 298 373 78 0 chr1 109167960 109168102 -133496251 + MIR SINE MIR 1 153 -109 263 264 28 62 chr1 109169528 109169556 -133494797 - L1ME4a LINE L1 -207 5914 5887 2222 99 0 7 chr1 109169556 109169859 -133494494 - AluSp SINE Alu -10 303 3 263 264 28 62 chr1 109169859 109169974 -133494379 - L1ME4a LINE L1 -234 5887 5776 201 325 11 90 chr1 109170245 109170522 -133493831 + L2 LINE L2 2829 3083 -189 348 189 18 153 chr1 109170856 109170967 -133493386 + MLT1H1 LTR MaLR 372 555 0 276 206 147 0 chr1 109170968 109171036 -133493317 + MER116 DNA Mariner 3 80 0 366 224 172 6 chr1 109171246 109171420 -133492933 + MER113 DNA MER1_type? 6 208 -313 621 226 193 0 chr1 109171682 109171854 -133492499 + MIR SINE MIR 56 259 -3 4754 197 44 16 chr1 109173089 109174910 -133489443 + L1MB1 LINE L1 1532 6235 -2 3913 247 64 20 chr1 109174903 109176417 -133487936 + L1MEc LINE L1 2162 3710 -2505 * 270 330 214 6 chr1 109176423 109176769 -133487584 - L2 LINE L2 -952 2362 1945 2228 123 0 0 chr1 109177990 109178299 -133486054 + AluSx SINE Alu 1 309 -3 392 303 46 13 chr1 109178382 109178534 -133485819 - MER5A DNA MER1_type 0 189 33 267 341 47 29 chr1 109178384 109178554 -133485799 + MER5A DNA MER1_type 17 189 0 * 204 40 0 0 chr1 109179434 109179459 -133484894 + (T)n Simple_repeat Simple_repeat 1 25 0 311 261 0 0 chr1 109179737 109179802 -133484551 - MIR3 SINE MIR -28 180 116 1784 169 0 13 chr1 109180669 109181080 -133483273 - AluJb SINE Alu 0 407 1 985 208 55 8 chr1 109181653 109181889 -133482464 - L1ME3A LINE L1 -100 6070 5824 2327 86 0 13 chr1 109182165 109182469 -133481884 - AluY SINE Alu -10 301 2 609 186 58 0 chr1 109182489 109182645 -133481708 - L1MA10 LINE L1 -1 6333 6169 246 180 0 40 chr1 109182723 109182773 -133481580 + MLT2D LTR ERVL 153 200 -214 1835 247 122 2 chr1 109182773 109183397 -133480956 - L1M4 LINE L1 -2530 3616 2918 4307 230 70 46 chr1 109183410 109183570 -133480783 + L1ME1 LINE L1 3328 3483 -2663 2308 84 24 0 chr1 109183570 109183867 -133480486 - AluY SINE Alu -7 304 1 4307 230 70 46 chr1 109183867 109185186 -133479167 + L1ME1 LINE L1 3483 4842 -1304 1027 49 0 123 chr1 109185188 109185351 -133479002 + AluSc SINE Alu 154 296 -13 870 229 39 21 chr1 109185353 109185935 -133478418 + L1ME1 LINE L1 4833 5522 -644 189 107 0 0 chr1 109185947 109185975 -133478378 + (TC)n Simple_repeat Simple_repeat 1 28 0 288 0 0 0 chr1 109185976 109186008 -133478345 + (TA)n Simple_repeat Simple_repeat 2 33 0 1509 261 17 19 chr1 109186009 109186423 -133477930 + L1ME1 LINE L1 5663 6075 -91 572 253 71 14 chr1 109186482 109186779 -133477574 + L1ME3A LINE L1 4387 4700 -1446 223 178 0 0 chr1 109186779 109186824 -133477529 + (TA)n Simple_repeat Simple_repeat 1 45 0 2414 86 34 6 chr1 109186898 109187248 -133477105 + L1PA13 LINE L1 5801 6160 -3 289 200 128 32 chr1 109187265 109187390 -133476963 + L1ME3A LINE L1 5815 5951 -219 2453 39 0 26 chr1 109187438 109187750 -133476603 + AluY SINE Alu 1 304 -7 321 307 21 43 chr1 109187973 109188113 -133476240 - MER5A DNA MER1_type -48 141 5 229 301 82 68 chr1 109189774 109190066 -133474287 + L2 LINE L2 3009 3304 -9 1504 149 109 37 chr1 109193025 109193375 -133470978 + THE1C LTR MaLR 1 375 0 276 242 95 11 chr1 109193562 109193657 -133470696 - MIR SINE MIR -23 239 137 936 272 47 43 chr1 109195128 109195604 -133468749 + MLT1H LTR MaLR 1 527 -22 347 352 82 16 chr1 109196448 109196630 -133467723 - MIR SINE MIR -48 214 21 247 238 155 0 chr1 109198488 109198526 -133465827 - MIR SINE MIR -18 244 213 207 0 0 0 chr1 109198526 109198549 -133465804 + (TA)n Simple_repeat Simple_repeat 1 23 0 247 238 155 0 chr1 109198549 109198594 -133465759 - MIR SINE MIR -49 213 148 202 208 62 0 chr1 109198594 109198642 -133465711 + CT-rich Low_complexity Low_complexity 3 53 0 322 278 98 26 chr1 109198642 109198780 -133465573 - MIR SINE MIR -59 149 8 694 223 0 8 chr1 109199958 109200088 -133464265 + FLAM_A SINE Alu 1 129 -4 344 220 0 0 chr1 109200114 109200173 -133464180 - L2 LINE L2 0 3272 3214 324 0 0 0 chr1 109200185 109200221 -133464132 + (CA)n Simple_repeat Simple_repeat 1 36 0 736 153 0 17 chr1 109200265 109200383 -133463970 - FLAM_C SINE Alu -25 118 3 347 287 47 40 chr1 109200460 109200610 -133463743 + L2 LINE L2 3122 3272 0 353 308 80 59 chr1 109200652 109200889 -133463464 - L2 LINE L2 -194 3078 2837 2553 142 37 23 chr1 109200999 109201486 -133462867 + L1MA7 LINE L1 5795 6288 -3 226 192 50 71 chr1 109201640 109201739 -133462614 + MIR SINE MIR 166 262 0 210 341 138 16 chr1 109201737 109201860 -133462493 + MIR SINE MIR 104 241 -21 * 311 239 92 39 chr1 109201866 109201996 -133462357 - L2 LINE L2 -684 2630 2494 1029 331 69 20 chr1 109202875 109203368 -133460985 - L3 LINE CR1 -37 1540 1024 192 77 0 0 chr1 109203487 109203513 -133460840 + (CA)n Simple_repeat Simple_repeat 1 26 0 421 281 146 17 chr1 109203599 109203777 -133460576 - MIR SINE MIR -61 201 1 699 277 64 0 chr1 109204517 109204705 -133459648 - MIR SINE MIR -16 246 47 405 241 125 0 chr1 109206239 109206351 -133458002 - MIR SINE MIR -64 144 19 22 56 0 0 chr1 109206425 109206461 -133457892 + AT_rich Low_complexity Low_complexity 1 36 0 238 264 69 28 chr1 109208518 109208590 -133455763 + L2 LINE L2 3132 3206 -66 897 345 146 22 chr1 109209552 109209650 -133454703 + L3 LINE CR1 563 648 -929 1962 132 75 29 chr1 109209650 109209998 -133454355 + THE1B LTR MaLR 1 364 0 897 345 146 22 chr1 109209998 109210613 -133453740 + L3 LINE CR1 648 1364 -213 367 336 8 25 chr1 109210597 109210719 -133453634 + L2 LINE L2 3149 3268 -4 * 1285 43 0 12 chr1 109210966 109211127 -133453226 + L1PA6 LINE L1 5992 6150 -4 7243 77 26 4 chr1 109312772 109313735 -133350618 - L1P3 LINE L1 -4738 1723 740 396 236 14 86 chr1 109313734 109313874 -133350479 + MLT-int LTR MaLR 960 1089 -646 * 3036 211 52 2 chr1 109313848 109314439 -133349914 + MLT1A1-int LTR MaLR 1115 1735 0 1871 180 18 65 chr1 109314439 109314525 -133349828 + MLT1A1 LTR MaLR 1 89 -276 2711 89 0 0 chr1 109314525 109314863 -133349490 + L1PA7 LINE L1 5811 6148 -6 1871 180 18 65 chr1 109314863 109315159 -133349194 + MLT1A1 LTR MaLR 89 365 0 390 282 69 83 chr1 109315163 109315440 -133348913 + L2 LINE L2 2951 3223 -90 222 208 0 0 chr1 109315496 109315544 -133348809 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 201 360 19 50 chr1 109315552 109315713 -133348640 - L2 LINE L2 -182 3090 2935 27 73 0 0 chr1 109315743 109315798 -133348555 + AT_rich Low_complexity Low_complexity 1 55 0 186 118 0 0 chr1 109316133 109316167 -133348186 + (TG)n Simple_repeat Simple_repeat 2 35 0 448 248 58 49 chr1 109316448 109316630 -133347723 - MIR3 SINE MIR -17 191 8 1015 322 68 2 chr1 109316786 109317356 -133346997 - L2 LINE L2 -1 3312 2695 695 268 32 41 chr1 109317342 109317588 -133346765 - MIR SINE MIR -11 251 8 * 442 325 16 0 chr1 109317625 109317751 -133346602 - L2 LINE L2 -685 2629 2502 1204 117 6 6 chr1 109317751 109317922 -133346431 - THE1B LTR MaLR 0 364 194 1446 172 10 37 chr1 109318052 109318391 -133345962 - THE1B LTR MaLR -37 338 1 653 318 138 25 chr1 109318402 109318874 -133345479 - L2 LINE L2 -819 2495 1971 1130 138 29 11 chr1 109319729 109319903 -133344450 + AluJb SINE Alu 89 265 -47 213 39 0 0 chr1 109319904 109319930 -133344423 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr1 109319930 109319954 -133344399 + AT_rich Low_complexity Low_complexity 1 24 0 196 310 17 0 chr1 109319957 109320015 -133344338 - L2 LINE L2 -1314 2000 1942 183 129 0 0 chr1 109320233 109320264 -133344089 + (GA)n Simple_repeat Simple_repeat 2 32 0 183 250 79 26 chr1 109322443 109322519 -133341834 - MIR SINE MIR -114 148 69 4896 128 47 26 chr1 109325020 109325864 -133338489 - L1MC2 LINE L1 -9 6335 5474 1276 54 0 22 chr1 109325970 109326154 -133338199 + (TTC)n Simple_repeat Simple_repeat 1 180 0 234 0 0 0 chr1 109327780 109327806 -133336547 + (CA)n Simple_repeat Simple_repeat 2 27 0 217 256 23 81 chr1 109328121 109328207 -133336146 - MER5A DNA MER1_type 0 189 109 283 289 56 11 chr1 109328386 109328476 -133335877 + MIR SINE MIR 52 145 -63 2054 175 14 8 chr1 109328485 109328840 -133335513 - MLT1A1 LTR MaLR 0 365 9 501 267 46 8 chr1 109329223 109329354 -133334999 - MIR SINE MIR -92 170 35 1195 194 9 22 chr1 109329359 109329581 -133334772 - MER20 DNA MER1_type 0 219 1 3653 225 11 4 chr1 109330069 109330901 -133333452 - L1P LINE L1 -2482 3664 2827 802 183 5 80 chr1 109330915 109331128 -133333225 + L1ME2 LINE L1 5694 5890 -274 264 158 24 181 chr1 109331263 109331390 -133332963 + L1MD1 LINE L1 5892 5998 -244 693 237 6 0 chr1 109331390 109331546 -133332807 + L1MA10 LINE L1 6170 6326 -8 5361 68 19 0 chr1 109331727 109332377 -133331976 - L1PA7 LINE L1 -16 6138 5477 4303 65 6 4 chr1 109332377 109332915 -133331438 - HERVL-A1 LTR ERVL -5115 539 1 401 60 0 49 chr1 109332915 109332984 -133331369 - MLT2A1 LTR ERVL 0 444 387 277 195 69 0 chr1 109332986 109333073 -133331280 + (TAGA)n Simple_repeat Simple_repeat 2 94 0 3335 56 5 2 chr1 109333084 109333492 -133330861 - MLT2A1 LTR ERVL -35 409 1 598 280 55 61 chr1 109333504 109333850 -133330503 + HAL1b LINE L1 280 623 -725 267 191 0 0 chr1 109333851 109333914 -133330439 + T-rich Low_complexity Low_complexity 1 63 0 1531 246 122 37 chr1 109334122 109334844 -133329509 + L1MC4a LINE L1 5261 6043 -1765 968 314 59 9 chr1 109334853 109335191 -133329162 - L2 LINE L2 -410 2904 2550 777 178 50 66 chr1 109335191 109335432 -133328921 - THE1B LTR MaLR 0 364 139 215 240 86 100 chr1 109336206 109336241 -133328112 - L2 LINE L2 -181 3091 3057 2944 119 9 35 chr1 109336241 109336676 -133327677 - MSTC LTR MaLR -4 424 1 215 240 86 100 chr1 109336676 109336919 -133327434 - L2 LINE L2 -215 3057 2817 530 329 53 12 chr1 109337245 109337488 -133326865 + MLT1J LTR MaLR 24 276 -235 831 162 136 0 chr1 109337520 109337674 -133326679 - MER5A DNA MER1_type -11 178 4 326 256 51 64 chr1 109337676 109337854 -133326499 + MLT1J2 LTR MaLR 256 390 -19 572 241 68 0 chr1 109337899 109338032 -133326321 + MIR SINE MIR 2 143 -119 1637 249 69 40 chr1 109338039 109338412 -133325941 + MER115 DNA AcHobo 125 521 -172 1344 173 63 32 chr1 109338412 109338696 -133325657 - AluJo SINE Alu -19 293 1 1637 249 69 40 chr1 109338696 109338871 -133325482 + MER115 DNA AcHobo 521 689 -4 257 247 54 32 chr1 109338988 109339081 -133325272 + MLT1J LTR MaLR 178 272 -239 463 287 65 26 chr1 109339125 109339355 -133324998 + L1M4 LINE L1 3652 3890 -2256 248 324 156 25 chr1 109339539 109340193 -133324160 - L2 LINE L2 -1011 2303 1564 330 264 143 0 chr1 109340260 109340351 -133324002 - L2 LINE L2 0 3313 3210 3197 144 47 6 chr1 109341652 109342186 -133322167 - L1MC1 LINE L1 0 6333 5778 252 0 0 0 chr1 109343201 109343229 -133321124 + (TC)n Simple_repeat Simple_repeat 1 28 0 216 135 0 0 chr1 109343579 109343616 -133320737 + (TA)n Simple_repeat Simple_repeat 1 37 0 513 222 42 124 chr1 109343617 109343910 -133320443 + L1MEd LINE L1 845 1161 -4958 1951 112 26 59 chr1 109343910 109344213 -133320140 + AluSx SINE Alu 1 293 -19 513 222 42 124 chr1 109344213 109344291 -133320062 + L1MEd LINE L1 1161 1175 -4944 953 129 0 0 chr1 109344291 109344423 -133319930 + FLAM_C SINE Alu 2 133 0 513 222 42 124 chr1 109344423 109344500 -133319853 + L1MEd LINE L1 1175 1257 -4862 722 189 8 0 chr1 109344873 109344995 -133319358 - FLAM_C SINE Alu -10 123 1 21 57 0 0 chr1 109345688 109345723 -133318630 + AT_rich Low_complexity Low_complexity 1 35 0 2288 176 26 5 chr1 109345729 109346144 -133318209 + MSTB LTR MaLR 1 424 -2 502 214 19 10 chr1 109347277 109347380 -133316973 + MER58A DNA MER1_type 1 104 -3 417 115 0 0 chr1 109347390 109347451 -133316902 + MER58A DNA MER1_type 161 221 -3 432 329 67 53 chr1 109347745 109347970 -133316383 - L2 LINE L2 -1 3271 3044 7099 109 34 43 chr1 109349301 109350543 -133313810 - Tigger3b DNA MER2_type -1 1230 1 267 79 0 0 chr1 109351027 109351065 -133313288 + (CA)n Simple_repeat Simple_repeat 1 38 0 483 151 32 30 chr1 109351165 109351280 -133313073 - L1M LINE L1 -753 5417 5301 3853 209 65 21 chr1 109351484 109352651 -133311702 - L1M LINE L1 -803 5343 4138 184 267 0 67 chr1 109354241 109354301 -133310052 + MIR3 SINE MIR 108 163 -45 314 136 0 17 chr1 109354322 109354381 -133309972 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1550 147 28 34 chr1 109355063 109355390 -133308963 - L1MC2 LINE L1 -7 6337 6013 2192 119 11 3 chr1 109356698 109357050 -133307303 - L1PA13 LINE L1 0 6163 5809 324 149 0 108 chr1 109357058 109357132 -133307221 - L1 LINE L1 -1411 4735 4670 * 7609 133 13 57 chr1 109357130 109358772 -133305581 - L1PA13 LINE L1 -357 5811 4099 2369 81 7 0 chr1 109358772 109359081 -133305272 - AluY SINE Alu 0 311 1 7609 133 13 57 chr1 109359081 109359418 -133304935 - L1PA13 LINE L1 -2069 4099 3933 3486 114 5 22 chr1 109359418 109359970 -133304383 - L1PA14 LINE L1 -3 6158 5616 7609 133 13 57 chr1 109359970 109360003 -133304350 - L1PA13 LINE L1 -2235 3933 3900 432 141 77 0 chr1 109360123 109360201 -133304152 - THE1C LTR MaLR -207 168 85 4902 130 3 62 chr1 109360201 109361053 -133303300 - THE1-int LTR MaLR -506 1074 273 360 308 44 19 chr1 109361778 109361937 -133302416 + PRIMA41-int LTR ERV1 1225 1387 -5414 1544 192 85 44 chr1 109362081 109362492 -133301861 - MSTC LTR MaLR 0 428 1 300 292 8 33 chr1 109363671 109363791 -133300562 + PRIMA41-int LTR ERV1 3304 3420 -4336 431 147 0 0 chr1 109363947 109364015 -133300338 - MSTC LTR MaLR -298 130 63 1807 173 42 0 chr1 109364145 109364475 -133299878 + MER2 DNA MER2_type 1 344 0 267 377 9 14 chr1 109365103 109365326 -133299027 + PRIMA41-int LTR ERV1 3376 3597 -3204 2212 149 86 8 chr1 109365644 109366026 -133298327 + MSTB LTR MaLR 13 424 -2 260 310 28 0 chr1 109366231 109366302 -133298051 + L2 LINE L2 3116 3188 -84 22 0 0 0 chr1 109367280 109367302 -133297051 + AT_rich Low_complexity Low_complexity 1 22 0 475 179 32 32 chr1 109367581 109367676 -133296677 + MLT1D LTR MaLR 1 95 -410 9448 219 43 23 chr1 109367769 109370635 -133293718 + L1M1 LINE L1 16 3634 -3931 1044 244 0 0 chr1 109370633 109370883 -133293470 - L1PB1 LINE L1 -944 5202 4953 * 6061 95 32 0 chr1 109370882 109371438 -133292915 + L1PB1 LINE L1 5215 5812 -339 777 24 57 0 chr1 109371438 109371561 -133292792 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 6061 95 32 0 chr1 109371561 109371912 -133292441 + L1PB1 LINE L1 5812 6150 -1 * 10518 187 28 54 chr1 109371909 109374173 -133290180 + L1M1 LINE L1 3612 5933 -1632 3267 102 47 4 chr1 109374173 109374661 -133289692 + MER75 DNA T2_type 2 510 -4 10518 187 28 54 chr1 109374661 109374724 -133289629 + L1M1 LINE L1 5933 5996 -1569 1708 212 3 0 chr1 109374724 109375035 -133289318 + AluJb SINE Alu 1 312 0 10518 187 28 54 chr1 109375035 109375613 -133288740 + L1M1 LINE L1 5996 6311 -1254 2117 113 7 7 chr1 109375613 109375906 -133288447 - AluSc SINE Alu -16 293 1 10518 187 28 54 chr1 109375906 109376122 -133288231 + L1M1 LINE L1 6311 6531 -1034 644 237 106 20 chr1 109376131 109376399 -133287954 + MLT1D LTR MaLR 311 505 0 603 187 26 52 chr1 109376605 109376760 -133287593 + MLT1H LTR MaLR 20 170 -379 622 250 69 23 chr1 109376829 109377044 -133287309 + MLT1H LTR MaLR 349 549 0 222 246 0 0 chr1 109377071 109377132 -133287221 + (ATG)n Simple_repeat Simple_repeat 2 62 0 514 307 117 0 chr1 109377967 109378172 -133286181 - L3 LINE CR1 -2 1575 1347 23 0 0 0 chr1 109378195 109378218 -133286135 + AT_rich Low_complexity Low_complexity 1 23 0 1788 166 7 14 chr1 109378218 109378502 -133285851 - AluJo SINE Alu -30 282 1 562 317 67 9 chr1 109378558 109378782 -133285571 + MIR SINE MIR 14 250 -12 342 262 37 19 chr1 109378798 109378905 -133285448 - L3 LINE CR1 -297 1280 1172 2083 133 0 3 chr1 109379241 109379543 -133284810 - AluSx SINE Alu -9 303 3 306 208 133 67 chr1 109379913 109380033 -133284320 + L1ME4a LINE L1 5957 6084 -37 215 337 56 0 chr1 109380230 109380319 -133284034 + L3b LINE CR1 1264 1357 -226 218 342 111 0 chr1 109381371 109381488 -133282865 + MIR SINE MIR 5 134 -128 374 130 43 94 chr1 109381531 109381669 -133282684 - L1MC5 LINE L1 -44 7917 7787 556 252 113 18 chr1 109381817 109382039 -133282314 + MER115 DNA AcHobo 1 243 -450 1158 178 41 48 chr1 109383944 109384213 -133280140 - L1MA10 LINE L1 -74 6260 5994 2691 17 0 0 chr1 109384569 109384865 -133279488 + AluY SINE Alu 2 297 -14 28 48 0 0 chr1 109385183 109385225 -133279128 + AT_rich Low_complexity Low_complexity 1 42 0 2491 188 28 52 chr1 109386153 109386729 -133277624 + MER68 LTR ERV1 1 562 0 1931 129 48 21 chr1 109388168 109388502 -133275851 - MER2 DNA MER2_type 0 344 2 185 56 0 83 chr1 109389690 109389726 -133274627 + (A)n Simple_repeat Simple_repeat 1 33 0 210 186 0 23 chr1 109390472 109390515 -133273838 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 21 71 0 0 chr1 109390692 109390734 -133273619 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr1 109391871 109391897 -133272456 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr1 109392513 109392558 -133271795 + AT_rich Low_complexity Low_complexity 1 45 0 180 214 0 0 chr1 109394247 109394303 -133270050 + (TA)n Simple_repeat Simple_repeat 2 57 0 2112 127 0 7 chr1 109394852 109395159 -133269194 + AluSx SINE Alu 5 309 -3 21 71 0 0 chr1 109395587 109395629 -133268724 + AT_rich Low_complexity Low_complexity 1 42 0 710 283 156 5 chr1 109395766 109395978 -133268375 - MIR SINE MIR -18 244 1 27 0 0 0 chr1 109396086 109396113 -133268240 + AT_rich Low_complexity Low_complexity 1 27 0 881 96 0 0 chr1 109397471 109397596 -133266757 - L1PB3 LINE L1 -1 6153 6029 365 266 252 0 chr1 109400168 109400307 -133264046 + MIR SINE MIR 81 254 -8 286 313 53 33 chr1 109401271 109401514 -133262839 - L2 LINE L2 -208 3064 2817 1927 92 53 4 chr1 109402437 109402718 -133261635 - AluSx SINE Alu -17 295 1 856 253 68 0 chr1 109405258 109405479 -133258874 - MIR SINE MIR -21 241 6 524 282 67 98 chr1 109405791 109406241 -133258112 + L2 LINE L2 2836 3271 -1 225 409 47 0 chr1 109406227 109406354 -133257999 + MIR3 SINE MIR 4 136 -72 * 383 207 128 55 chr1 109407969 109408009 -133256344 - L1ME LINE L1 -614 5548 5512 2050 130 0 7 chr1 109408009 109408308 -133256045 - AluSx SINE Alu -15 297 1 383 207 128 55 chr1 109408308 109408431 -133255922 - L1ME LINE L1 -650 5512 5373 2022 141 3 0 chr1 109408434 109408738 -133255615 - AluSx SINE Alu -2 310 6 183 336 55 18 chr1 109408758 109408868 -133255485 - MIR SINE MIR 0 262 149 561 134 0 0 chr1 109409386 109409468 -133254885 - AluSc SINE Alu -226 83 2 210 204 20 0 chr1 109410010 109410059 -133254294 - MIR3 SINE MIR -7 201 152 529 270 89 37 chr1 109410754 109411024 -133253329 + L3 LINE CR1 1050 1333 -244 2039 124 3 10 chr1 109411158 109411457 -133252896 + AluSx SINE Alu 1 297 -15 856 134 5 108 chr1 109411890 109412076 -133252277 - AluSg/x SINE Alu -12 298 132 1586 99 145 34 chr1 109412076 109412197 -133252156 - AluSx SINE Alu -21 291 185 2118 115 0 10 chr1 109412197 109412501 -133251852 - AluSq SINE Alu -10 303 3 1586 99 145 34 chr1 109412501 109412641 -133251712 - AluSx SINE Alu -127 185 1 1823 148 3 10 chr1 109413160 109413471 -133250882 + AluSx SINE Alu 1 309 -3 452 328 31 5 chr1 109413732 109413924 -133250429 - ERVL LTR ERVL -522 5242 5046 222 268 106 41 chr1 109413927 109414050 -133250303 - L3 LINE CR1 -91 1486 1356 899 277 77 21 chr1 109414050 109414429 -133249924 - ERVL LTR ERVL -868 4896 4497 1672 225 41 64 chr1 109414459 109414512 -133249841 - MLT1F1 LTR MaLR -12 555 502 2077 125 3 14 chr1 109414512 109414807 -133249546 + AluSq SINE Alu 1 292 -21 1672 225 41 64 chr1 109414807 109415143 -133249210 - MLT1F1 LTR MaLR -65 502 178 2300 88 3 3 chr1 109415143 109415438 -133248915 - AluSc SINE Alu -14 295 1 1672 225 41 64 chr1 109415438 109415612 -133248741 - MLT1F1 LTR MaLR -389 178 1 3226 262 86 23 chr1 109415658 109416798 -133247555 + ERVL LTR ERVL 3326 4537 -1227 309 217 113 19 chr1 109416840 109416946 -133247407 + L1ME4a LINE L1 5964 6079 -42 1939 136 48 14 chr1 109417047 109417341 -133247012 + AluSx SINE Alu 1 304 -8 1516 179 24 28 chr1 109417373 109417664 -133246689 - AluJo SINE Alu -22 290 1 333 273 62 88 chr1 109417761 109417955 -133246398 - MER5A DNA MER1_type 0 189 1 181 347 28 14 chr1 109418265 109418337 -133246016 + MIR SINE MIR 36 108 -100 601 313 39 8 chr1 109419309 109419576 -133244777 + MSTA LTR MaLR 1 271 -155 256 263 163 31 chr1 109419612 109419772 -133244581 + LTR50 LTR ERVL 26 206 -589 382 251 115 11 chr1 109419811 109420002 -133244351 + LTR33A LTR ERVL 304 514 -9 277 253 145 0 chr1 109420007 109420090 -133244263 + LTR67 LTR ERVL 426 520 -37 491 258 253 16 chr1 109420768 109420962 -133243391 - MIR SINE MIR 0 262 23 244 354 10 0 chr1 109421328 109421424 -133242929 - MIR3 SINE MIR -19 189 93 446 336 37 28 chr1 109421522 109421736 -133242617 - MIR SINE MIR -1 261 46 186 43 0 0 chr1 109421820 109421843 -133242510 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 348 24 0 0 chr1 109421842 109421883 -133242470 + (TG)n Simple_repeat Simple_repeat 2 42 0 523 310 88 13 chr1 109422698 109422924 -133241429 + MIR SINE MIR 20 262 0 368 317 60 52 chr1 109423157 109423207 -133241146 + L1MC4a LINE L1 5714 5762 -359 1657 161 25 44 chr1 109423207 109423524 -133240829 + AluJo SINE Alu 1 311 -1 368 317 60 52 chr1 109423524 109423723 -133240630 + L1MC4a LINE L1 5762 5967 -154 855 161 0 0 chr1 109424316 109424446 -133239907 - FLAM_C SINE Alu -2 131 2 189 74 0 0 chr1 109424720 109424747 -133239606 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 488 241 128 20 chr1 109424873 109425068 -133239285 + MIR SINE MIR 35 250 -12 2004 143 0 7 chr1 109427028 109427329 -133237024 + AluSx SINE Alu 1 299 -13 2198 105 3 7 chr1 109428446 109428740 -133235613 - AluSg SINE Alu -17 293 1 291 376 72 8 chr1 109428967 109429092 -133235261 - L2 LINE L2 -3 3269 3137 290 295 134 9 chr1 109429128 109429240 -133235113 - MIR SINE MIR -23 239 114 779 196 86 18 chr1 109429505 109429668 -133234685 + FRAM SINE Alu 1 174 -2 574 224 8 0 chr1 109430190 109430315 -133234038 + MER33 DNA MER1_type 1 126 -198 472 141 293 0 chr1 109430315 109430414 -133233939 + FLAM_C SINE Alu 1 128 -15 620 160 61 66 chr1 109430414 109430627 -133233726 + MER33 DNA MER1_type 113 324 0 1330 203 72 24 chr1 109430683 109430974 -133233379 - AluJo SINE Alu -5 307 3 224 343 14 14 chr1 109430983 109431056 -133233297 + L3 LINE CR1 1417 1489 -88 289 294 92 8 chr1 109431073 109431192 -133233161 - L2 LINE L2 0 3313 3185 212 215 76 63 chr1 109431182 109431261 -133233092 + L3 LINE CR1 1478 1557 -20 * 393 308 45 0 chr1 109432158 109432314 -133232039 - L2 LINE L2 -474 2840 2678 189 242 113 16 chr1 109433879 109433941 -133230412 + MIR3 SINE MIR 125 192 -16 882 269 159 35 chr1 109434721 109434976 -133229377 + HAL1 LINE L1 1541 1763 -744 447 52 0 0 chr1 109434976 109435034 -133229319 + (CA)n Simple_repeat Simple_repeat 1 58 0 882 269 159 35 chr1 109435034 109435638 -133228715 + HAL1 LINE L1 1763 2507 0 2203 110 20 0 chr1 109436003 109436302 -133228051 + AluSx SINE Alu 1 305 -7 237 216 20 39 chr1 109436302 109436329 -133228024 + (TA)n Simple_repeat Simple_repeat 1 27 -73 234 0 0 0 chr1 109436329 109436355 -133227998 + (GA)n Simple_repeat Simple_repeat 1 26 0 237 216 20 39 chr1 109436355 109436429 -133227924 + (TA)n Simple_repeat Simple_repeat 27 100 0 470 268 139 41 chr1 109436462 109437094 -133227259 - L1ME4a LINE L1 -65 6056 5366 216 264 99 0 chr1 109437216 109437307 -133227046 - L2 LINE L2 -638 2676 2577 314 269 85 23 chr1 109438868 109438998 -133225355 + L2 LINE L2 2637 2774 -540 670 301 52 5 chr1 109439446 109439659 -133224694 + MIR SINE MIR 14 236 -26 1996 133 7 10 chr1 109440267 109440598 -133223755 - AluSx SINE Alu 0 312 1 1163 168 18 10 chr1 109441177 109441453 -133222900 + MLT1A1 LTR MaLR 1 364 -1 882 181 12 12 chr1 109442292 109442458 -133221895 - FRAM SINE Alu 0 166 1 236 369 59 32 chr1 109442562 109442749 -133221604 + MIR3 SINE MIR 17 208 0 180 0 0 0 chr1 109443591 109443611 -133220742 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3193 88 4 0 chr1 109444529 109444983 -133219370 + L1PA14 LINE L1 5402 5857 -304 386 60 0 0 chr1 109444987 109445037 -133219316 + L1PA6 LINE L1 6096 6145 -9 208 241 0 0 chr1 109445037 109445095 -133219258 + (TA)n Simple_repeat Simple_repeat 1 58 0 241 368 108 50 chr1 109445208 109445531 -133218822 - L2 LINE L2 -65 3207 2866 3788 150 19 13 chr1 109447221 109447896 -133216457 + L1MB4 LINE L1 5500 6178 -2 26 0 0 0 chr1 109448298 109448324 -133216029 + AT_rich Low_complexity Low_complexity 1 26 0 1101 131 33 33 chr1 109448380 109448594 -133215759 + L1PB3 LINE L1 5940 6153 -1 566 225 166 0 chr1 109448870 109449021 -133215332 + MER5A DNA MER1_type 14 189 0 2085 191 44 28 chr1 109450616 109451113 -133213240 - MLT1D LTR MaLR 0 505 1 5036 204 129 48 chr1 109451176 109451418 -133212935 + L1ME LINE L1 27 248 -6292 2002 130 21 0 chr1 109451418 109451703 -133212650 - AluSx SINE Alu -21 291 1 5036 204 129 48 chr1 109451703 109453030 -133211323 + L1ME LINE L1 248 1722 -4818 6214 235 64 22 chr1 109453034 109454187 -133210166 + L1ME LINE L1 3515 4795 -1745 2294 102 0 3 chr1 109454187 109454500 -133209853 + AluSq SINE Alu 1 312 -1 6214 235 64 22 chr1 109454500 109455415 -133208938 + L1ME LINE L1 4795 5670 -870 375 235 280 10 chr1 109455421 109455621 -133208732 + L1ME LINE L1 5798 6051 -507 1384 276 65 12 chr1 109455643 109456324 -133208029 - L1M LINE L1 -751 5411 4696 323 279 117 28 chr1 109456336 109456515 -133207838 - L1 LINE L1 -1633 4513 4319 2680 219 97 24 chr1 109456520 109457305 -133207048 - L1ME2 LINE L1 -86 6078 5237 228 246 0 0 chr1 109457350 109457407 -133206946 - L1 LINE L1 -1825 4321 4265 1273 223 75 3 chr1 109457410 109457829 -133206524 - L1 LINE L1 -1979 4167 3701 393 162 121 0 chr1 109457821 109457920 -133206433 - L1M LINE L1 -797 5377 5267 * 22 56 0 0 chr1 109458749 109458785 -133205568 + AT_rich Low_complexity Low_complexity 1 36 0 956 118 7 7 chr1 109458816 109458952 -133205401 + AluJo SINE Alu 1 136 -176 217 234 0 0 chr1 109459185 109459232 -133205121 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 286 184 20 0 chr1 109459247 109459296 -133205057 - MIR SINE MIR -117 91 42 186 189 0 0 chr1 109460440 109460477 -133203876 + (TG)n Simple_repeat Simple_repeat 2 38 0 557 178 158 7 chr1 109460625 109460766 -133203587 - MER104 DNA Tc2 -4 176 14 711 147 105 7 chr1 109460766 109460909 -133203444 - MER106B DNA MER1_type 0 1059 903 2364 88 3 0 chr1 109460980 109461285 -133203068 - AluSp SINE Alu -7 306 1 1659 123 20 115 chr1 109462613 109462962 -133201391 + AluYb8 SINE Alu 3 318 0 24 32 0 0 chr1 109462971 109463002 -133201351 + AT_rich Low_complexity Low_complexity 1 31 0 604 141 0 58 chr1 109464217 109464338 -133200015 - MER53 DNA DNA -75 114 1 213 231 231 0 chr1 109465681 109465785 -133198568 - MIR SINE MIR -15 247 120 1256 133 96 7 chr1 109465786 109466056 -133198297 + L1MA8 LINE L1 5992 6285 -6 360 245 168 39 chr1 109466511 109466702 -133197651 + LTR50 LTR ERVL 24 215 -308 439 251 115 11 chr1 109466714 109466905 -133197448 + LTR33A LTR ERVL 304 514 -9 305 253 145 0 chr1 109466910 109466993 -133197360 + LTR67 LTR ERVL 426 520 -37 488 258 253 16 chr1 109467671 109467865 -133196488 - MIR SINE MIR 0 262 23 245 354 10 0 chr1 109468231 109468327 -133196026 - MIR3 SINE MIR -19 189 93 436 336 37 28 chr1 109468425 109468639 -133195714 - MIR SINE MIR -1 261 46 384 22 0 0 chr1 109468743 109468788 -133195565 + (TG)n Simple_repeat Simple_repeat 2 46 0 519 310 88 13 chr1 109469603 109469829 -133194524 + MIR SINE MIR 20 262 0 367 304 63 71 chr1 109470062 109470112 -133194241 + L1MC4a LINE L1 5714 5763 -358 1616 166 26 38 chr1 109470112 109470425 -133193928 + AluJo SINE Alu 1 309 -3 367 304 63 71 chr1 109470425 109470628 -133193725 + L1MC4a LINE L1 5763 5967 -154 849 161 0 0 chr1 109471221 109471351 -133193002 - FLAM_C SINE Alu -2 131 2 189 74 0 0 chr1 109471625 109471652 -133192701 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 486 241 128 20 chr1 109471778 109471973 -133192380 + MIR SINE MIR 35 250 -12 234 296 153 31 chr1 109473066 109473262 -133191091 - Charlie8 DNA MER1_type -2196 221 2 1995 143 0 7 chr1 109473934 109474235 -133190118 + AluSx SINE Alu 1 299 -13 2181 105 3 7 chr1 109475354 109475648 -133188705 - AluSg SINE Alu -17 293 1 294 376 72 8 chr1 109475875 109476000 -133188353 - L2 LINE L2 -3 3269 3137 294 295 134 9 chr1 109476036 109476148 -133188205 - MIR SINE MIR -23 239 114 211 315 173 25 chr1 109476690 109477014 -133187339 - L2 LINE L2 -1075 2239 1868 238 307 93 43 chr1 109478086 109478226 -133186127 - L2 LINE L2 -1 3271 3125 236 323 110 58 chr1 109478307 109478617 -133185736 - L2 LINE L2 -337 2977 2652 720 144 51 98 chr1 109480777 109480879 -133183474 + MER33 DNA MER1_type 6 94 -2491 1942 157 0 3 chr1 109480879 109481191 -133183162 + AluJb SINE Alu 1 311 -1 720 144 51 98 chr1 109481191 109481303 -133183050 + MER33 DNA MER1_type 94 210 -114 714 180 51 67 chr1 109482439 109482617 -133181736 - MER69A DNA AcHobo -2 175 1 235 240 50 58 chr1 109482927 109483048 -133181305 - L1M4 LINE L1 -1526 4620 4501 182 341 11 44 chr1 109483288 109483379 -133180974 - L2 LINE L2 -401 2912 2825 1910 157 3 3 chr1 109484242 109484542 -133179811 + AluJb SINE Alu 1 300 -12 419 67 50 34 chr1 109485468 109485587 -133178766 + (TA)n Simple_repeat Simple_repeat 1 121 0 508 294 10 36 chr1 109485961 109486155 -133178198 + MER5A DNA MER1_type 1 189 0 640 149 19 0 chr1 109487408 109487515 -133176838 - MER5A DNA MER1_type -3 186 78 804 281 12 28 chr1 109488149 109488398 -133175955 + MIR SINE MIR 18 262 0 228 368 23 60 chr1 109488365 109488498 -133175855 + L3 LINE CR1 1371 1498 -79 * 1173 198 113 56 chr1 109489469 109489948 -133174405 - Charlie4a DNA MER1_type -2 506 1 29 47 0 0 chr1 109489970 109490013 -133174340 + AT_rich Low_complexity Low_complexity 1 43 0 272 398 24 0 chr1 109490183 109490349 -133174004 + L3 LINE CR1 645 814 -763 188 175 254 0 chr1 109490402 109490465 -133173888 - MIR SINE MIR -14 248 170 999 193 111 73 chr1 109490625 109490676 -133173677 + HAL1 LINE L1 11 59 -2448 1822 158 0 10 chr1 109490676 109490974 -133173379 - AluJb SINE Alu -17 295 1 999 193 111 73 chr1 109490974 109491152 -133173201 + HAL1 LINE L1 59 262 -2245 2165 119 7 3 chr1 109491152 109491455 -133172898 + AluSq SINE Alu 1 304 -9 999 193 111 73 chr1 109491455 109491592 -133172761 + HAL1 LINE L1 262 392 -2115 208 297 0 103 chr1 109491654 109491829 -133172524 + L3 LINE CR1 1410 1566 -11 330 286 36 60 chr1 109491850 109492018 -133172335 + L2 LINE L2 1627 1790 -1524 2082 96 31 0 chr1 109492023 109492316 -133172037 - AluSq SINE Alu -9 304 3 1094 173 30 5 chr1 109492325 109492522 -133171831 - L1MB7 LINE L1 -51 6133 5932 806 291 187 39 chr1 109492543 109492749 -133171604 + L2 LINE L2 1942 2116 -1198 756 251 16 5 chr1 109492749 109492936 -133171417 - MER5A DNA MER1_type 0 189 1 806 291 187 39 chr1 109492936 109493530 -133170823 + L2 LINE L2 2116 2861 -453 209 215 76 63 chr1 109494403 109494482 -133169871 - L3 LINE CR1 -20 1557 1478 * 290 294 92 8 chr1 109494472 109494591 -133169762 + L2 LINE L2 3185 3313 0 224 343 14 14 chr1 109494608 109494681 -133169672 - L3 LINE CR1 -88 1489 1417 1293 203 72 24 chr1 109494690 109494981 -133169372 + AluJo SINE Alu 3 307 -5 670 160 61 66 chr1 109495037 109495250 -133169103 - MER33 DNA MER1_type 0 324 113 465 141 293 0 chr1 109495250 109495349 -133169004 - FLAM_C SINE Alu -15 128 1 612 224 8 0 chr1 109495349 109495474 -133168879 - MER33 DNA MER1_type -198 126 1 1516 180 49 33 chr1 109495996 109496302 -133168051 - AluJo SINE Alu -1 311 1 444 195 168 9 chr1 109497839 109497952 -133166401 + FLAM_A SINE Alu 1 131 -2 358 242 0 20 chr1 109497956 109498055 -133166298 + MER103 DNA DNA 24 120 -46 394 101 20 30 chr1 109498074 109498173 -133166180 + (TA)n Simple_repeat Simple_repeat 2 99 0 595 247 53 24 chr1 109498197 109498367 -133165986 + MER5B DNA MER1_type 1 175 -3 2061 90 25 11 chr1 109498672 109498951 -133165402 - AluSx SINE Alu -29 283 1 193 367 18 0 chr1 109500080 109500189 -133164164 + L2 LINE L2 3149 3259 -13 27 0 0 0 chr1 109500584 109500611 -133163742 + AT_rich Low_complexity Low_complexity 1 27 0 235 218 30 59 chr1 109501221 109501322 -133163031 + L1MC4a LINE L1 6077 6174 -1634 1607 172 45 0 chr1 109501465 109501732 -133162621 + AluSx SINE Alu 1 279 -33 211 247 13 13 chr1 109501732 109501809 -133162544 + (TAA)n Simple_repeat Simple_repeat 2 78 0 509 221 0 87 chr1 109501875 109502024 -133162329 - MIR SINE MIR -119 143 8 203 250 42 83 chr1 109502394 109502490 -133161863 - L2 LINE L2 0 3313 3222 2021 143 0 0 chr1 109502698 109502991 -133161362 - AluJb SINE Alu -19 293 1 478 272 210 30 chr1 109504320 109504766 -133159587 - L2 LINE L2 -22 3291 2763 273 216 150 26 chr1 109507106 109507259 -133157094 + MER113 DNA MER1_type? 1 172 -349 225 0 0 0 chr1 109507730 109507755 -133156598 + (A)n Simple_repeat Simple_repeat 1 25 0 241 281 34 0 chr1 109507771 109507860 -133156493 + L1MC4 LINE L1 6612 6703 -1339 21 0 0 0 chr1 109507863 109507884 -133156469 + AT_rich Low_complexity Low_complexity 1 21 0 1916 153 0 3 chr1 109508672 109508973 -133155380 - AluJb SINE Alu -12 300 1 238 258 66 78 chr1 109508995 109509162 -133155191 - MER69A DNA AcHobo -2 175 11 200 375 113 0 chr1 109509412 109509580 -133154773 + L2 LINE L2 2865 3051 -221 572 220 92 12 chr1 109509666 109509839 -133154514 - MIR SINE MIR 0 262 76 294 343 71 21 chr1 109510774 109510914 -133153439 + L2 LINE L2 3148 3294 -19 527 222 7 52 chr1 109511001 109511136 -133153217 + MIR SINE MIR 105 233 -29 191 59 0 29 chr1 109513537 109513571 -133150782 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 830 127 8 0 chr1 109513574 109513692 -133150661 - FLAM_C SINE Alu -24 119 1 21 0 0 0 chr1 109514388 109514409 -133149944 + AT_rich Low_complexity Low_complexity 1 21 0 974 102 29 0 chr1 109514798 109514935 -133149418 - AluSp/q SINE Alu -6 307 167 535 42 42 10 chr1 109515083 109515179 -133149174 + (TA)n Simple_repeat Simple_repeat 2 100 0 610 333 204 13 chr1 109515808 109516180 -133148173 + L2 LINE L2 2830 3272 0 2023 91 25 7 chr1 109517259 109517544 -133146809 + AluSg SINE Alu 1 290 -20 1357 175 0 9 chr1 109517641 109517858 -133146495 - AluJo SINE Alu -9 303 89 2655 79 0 0 chr1 109518177 109518533 -133145820 + THE1B-int LTR MaLR 1225 1580 0 2205 128 73 14 chr1 109518533 109518877 -133145476 + THE1B LTR MaLR 1 364 0 1314 134 20 29 chr1 109518877 109519123 -133145230 + L1MA5A LINE L1 6009 6252 -45 * 5542 106 5 2 chr1 109519110 109519951 -133144402 + L1PA13 LINE L1 5308 6150 -13 254 103 35 17 chr1 109519989 109520047 -133144306 + L1MA5A LINE L1 6239 6297 0 23 0 0 0 chr1 109520047 109520070 -133144283 + AT_rich Low_complexity Low_complexity 1 23 0 180 241 0 0 chr1 109520077 109520106 -133144247 - L2 LINE L2 -43 3229 3201 7655 138 23 2 chr1 109520119 109520921 -133143432 + L1PA11 LINE L1 4100 4884 -1290 2207 122 3 10 chr1 109520921 109521232 -133143121 - AluSq SINE Alu -4 309 1 7655 138 23 2 chr1 109521232 109522496 -133141857 + L1PA11 LINE L1 4884 6174 0 2322 65 0 0 chr1 109523007 109523320 -133141033 - AluY SINE Alu 0 318 6 622 64 0 0 chr1 109523670 109523748 -133140605 - AluY SINE Alu -17 294 217 23 33 0 0 chr1 109523877 109523907 -133140446 + AT_rich Low_complexity Low_complexity 1 30 0 849 208 64 60 chr1 109524496 109524746 -133139607 - MER112 DNA MER1_type -9 251 1 388 256 68 8 chr1 109525136 109525253 -133139100 + MIR3 SINE MIR 33 156 -52 2340 75 10 0 chr1 109525822 109526117 -133138236 - AluSp SINE Alu -15 298 1 493 265 152 0 chr1 109526532 109526664 -133137689 - L2 LINE L2 -2 3311 3160 273 29 0 0 chr1 109526718 109526753 -133137600 - MADE1 DNA Mariner -45 35 1 887 145 92 0 chr1 109528005 109528157 -133136196 - FRAM SINE Alu -16 160 1 341 302 163 28 chr1 109528213 109528465 -133135888 + L1ME LINE L1 5320 5605 -516 35 0 0 0 chr1 109528854 109528889 -133135464 + AT_rich Low_complexity Low_complexity 1 35 0 216 303 112 11 chr1 109529061 109529150 -133135203 + L2 LINE L2 3212 3309 -4 224 254 119 60 chr1 109529190 109529324 -133135029 + L2 LINE L2 3172 3313 0 479 267 102 47 chr1 109529657 109529893 -133134460 - MIR SINE MIR -7 255 7 218 336 28 35 chr1 109530139 109530282 -133134071 - L3b LINE CR1 -292 1291 1150 1305 68 182 0 chr1 109530727 109530919 -133133434 + MER30 DNA MER1_type 4 230 0 187 316 11 32 chr1 109530938 109531033 -133133320 - MIR SINE MIR -74 188 96 524 176 19 0 chr1 109531094 109531202 -133133151 + L1MB3 LINE L1 6072 6181 -2 245 263 0 0 chr1 109531449 109531506 -133132847 - L2 LINE L2 0 3313 3257 1352 310 127 22 chr1 109531751 109532626 -133131727 - L2 LINE L2 -67 3246 2279 309 198 0 125 chr1 109532620 109532716 -133131637 - MIR SINE MIR -73 189 106 * 1356 197 4 14 chr1 109533457 109533736 -133130617 + AluJo SINE Alu 1 276 -36 631 194 7 21 chr1 109533837 109534006 -133130347 + FRAM SINE Alu 5 171 0 23 0 0 0 chr1 109534136 109534159 -133130194 + AT_rich Low_complexity Low_complexity 1 23 0 1949 78 43 0 chr1 109534175 109534432 -133129921 - AluSc SINE Alu -33 276 9 187 257 0 0 chr1 109535562 109535597 -133128756 - MIR SINE MIR -24 238 204 366 250 0 45 chr1 109535994 109536082 -133128271 - MIR3 SINE MIR -23 185 102 269 250 50 0 chr1 109537981 109538041 -133126312 - L2 LINE L2 0 3272 3210 210 71 0 0 chr1 109538623 109538651 -133125702 + (TA)n Simple_repeat Simple_repeat 2 29 0 1641 88 28 0 chr1 109538651 109538866 -133125487 - AluSg/x SINE Alu -19 293 73 2080 132 3 23 chr1 109538911 109539221 -133125132 - AluJb SINE Alu -8 304 1 616 206 12 10 chr1 109539263 109539519 -133124834 + AluJ SINE Alu 1 312 0 22 56 0 0 chr1 109540395 109540431 -133123922 + AT_rich Low_complexity Low_complexity 1 36 0 1104 151 0 0 chr1 109541416 109541575 -133122778 - AluSx SINE Alu -130 182 24 2013 134 0 0 chr1 109541929 109542204 -133122149 - AluSx SINE Alu -14 298 24 937 159 73 0 chr1 109542698 109542849 -133121504 - MER5A DNA MER1_type -26 163 2 259 308 112 20 chr1 109543205 109543455 -133120898 - Charlie8 DNA MER1_type -2333 84 1 1573 188 0 67 chr1 109545574 109545903 -133118450 + AluJo SINE Alu 1 307 -5 197 322 140 42 chr1 109546682 109546968 -133117385 - L2 LINE L2 -1298 2016 1703 * 426 345 102 50 chr1 109546964 109547306 -133117047 - L2 LINE L2 -24 3248 2889 180 269 167 13 chr1 109547783 109547861 -133116492 + MIR SINE MIR 39 128 -80 245 238 50 73 chr1 109548026 109548069 -133116284 - MIR SINE MIR -26 236 194 2361 151 91 5 chr1 109548069 109548467 -133115886 + MSTB1 LTR MaLR 1 432 0 245 238 50 73 chr1 109548467 109548563 -133115790 - MIR SINE MIR -68 194 99 536 125 0 0 chr1 109549348 109549428 -133114925 - MADE1 DNA Mariner 0 80 1 2196 92 3 23 chr1 109550772 109551075 -133113278 + AluSp SINE Alu 1 297 -16 6814 42 0 5 chr1 109551812 109552617 -133111736 - L1PA5 LINE L1 -15 6139 5339 238 356 82 27 chr1 109552803 109553022 -133111331 + L2 LINE L2 2832 3062 -210 6898 23 0 1 chr1 109553560 109554308 -133110045 + L1PA3 LINE L1 5409 6155 0 5911 116 18 1 chr1 109554502 109555331 -133109022 + Tigger1 DNA MER2_type 2 844 -1574 5284 115 32 41 chr1 109555330 109556167 -133108186 + Tigger1 DNA MER2_type 1589 2418 0 * 2085 177 48 15 chr1 109556401 109557691 -133106662 + L1PA16 LINE L1 3729 4975 -1191 1537 147 63 70 chr1 109557691 109557828 -133106525 + AluJo SINE Alu 1 137 -175 1943 150 3 3 chr1 109557828 109558121 -133106232 + AluJo SINE Alu 1 293 -19 1537 147 63 70 chr1 109558121 109558282 -133106071 + AluJo SINE Alu 137 297 -15 2085 177 48 15 chr1 109558282 109558713 -133105640 + L1PA16 LINE L1 4975 5390 -776 2087 64 9 109 chr1 109558713 109559042 -133105311 + AluSx SINE Alu 9 304 -8 2085 177 48 15 chr1 109559042 109559535 -133104818 + L1PA16 LINE L1 5390 6166 0 581 186 150 14 chr1 109559760 109559900 -133104453 - MER3 DNA MER1_type 0 209 51 23 0 0 0 chr1 109560591 109560614 -133103739 + AT_rich Low_complexity Low_complexity 1 23 0 212 185 74 0 chr1 109561786 109561840 -133102513 - L2 LINE L2 0 3313 3256 188 233 23 0 chr1 109562026 109562069 -133102284 - L2 LINE L2 -91 3181 3138 324 0 0 0 chr1 109562134 109562170 -133102183 + (TG)n Simple_repeat Simple_repeat 2 37 0 414 307 100 0 chr1 109562505 109562645 -133101708 + MIR3 SINE MIR 32 185 -23 2363 71 3 26 chr1 109563601 109563911 -133100442 + AluSc SINE Alu 1 303 -6 1416 174 106 0 chr1 109563974 109564238 -133100115 - AluJb SINE Alu -20 292 1 28 0 0 0 chr1 109564469 109564497 -133099856 + AT_rich Low_complexity Low_complexity 1 28 0 3312 157 20 58 chr1 109564677 109565313 -133099040 + LTR9 LTR ERV1 1 612 0 367 257 89 45 chr1 109565525 109565727 -133098626 + L1ME4a LINE L1 5712 5922 -199 477 244 26 9 chr1 109566526 109566641 -133097712 - L2 LINE L2 0 3272 3156 210 105 0 0 chr1 109566973 109567011 -133097342 + (T)n Simple_repeat Simple_repeat 1 38 0 2190 110 3 19 chr1 109567466 109567783 -133096570 + AluSx SINE Alu 1 312 0 879 208 23 23 chr1 109568304 109568520 -133095833 + MIR SINE MIR 15 230 -32 207 100 0 0 chr1 109568535 109568565 -133095788 + (CTG)n Simple_repeat Simple_repeat 2 31 0 739 118 215 14 chr1 109570522 109570666 -133093687 - FAM SINE Alu -1 48 1 363 273 131 46 chr1 109571149 109571409 -133092944 + L2 LINE L2 2330 2611 -703 2360 93 0 19 chr1 109571409 109571719 -133092634 - AluSg SINE Alu -6 304 1 865 255 72 5 chr1 109571810 109572018 -133092335 + MIR SINE MIR 31 252 -10 218 346 116 49 chr1 109572131 109572460 -133091893 + L2 LINE L2 2816 3166 -106 206 267 0 27 chr1 109575821 109575896 -133088457 + C-rich Low_complexity Low_complexity 5 77 0 213 200 0 0 chr1 109576207 109576247 -133088106 + CT-rich Low_complexity Low_complexity 1 40 0 279 0 0 0 chr1 109576287 109576318 -133088035 + (CA)n Simple_repeat Simple_repeat 1 31 0 1623 191 7 17 chr1 109577555 109577854 -133086499 - AluJo SINE Alu -12 300 5 2125 106 0 3 chr1 109577999 109578315 -133086038 - AluSg SINE Alu 0 315 1 297 106 21 0 chr1 109578466 109578513 -133085840 - MIR SINE MIR -92 170 123 29 28 0 0 chr1 109578853 109578889 -133085464 + AT_rich Low_complexity Low_complexity 1 36 0 421 333 87 52 chr1 109579705 109580107 -133084246 - L2 LINE L2 0 3272 2857 728 183 183 16 chr1 109580241 109580427 -133083926 - Tigger2 DNA MER2_type -10 2708 2492 662 157 26 9 chr1 109580423 109580538 -133083815 - Tigger2 DNA MER2_type -2601 117 1 * 2381 97 0 0 chr1 109580943 109581251 -133083102 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr1 109581257 109581279 -133083074 + AT_rich Low_complexity Low_complexity 1 22 0 320 309 114 20 chr1 109581814 109581927 -133082426 + L2 LINE L2 2355 2456 -858 2057 136 7 0 chr1 109581927 109582221 -133082132 + AluSx SINE Alu 1 296 -16 320 309 114 20 chr1 109582221 109582353 -133082000 + L2 LINE L2 2456 2623 -691 767 105 94 117 chr1 109582644 109582815 -133081538 + THE1C LTR MaLR 209 375 0 864 177 111 17 chr1 109582840 109583021 -133081332 + MSTD LTR MaLR 199 396 0 298 350 123 41 chr1 109583109 109583475 -133080878 - L2 LINE L2 -690 2624 2229 853 297 44 0 chr1 109583518 109583747 -133080606 + MIR SINE MIR 3 241 -21 2302 31 0 0 chr1 109583899 109584156 -133080197 - L1PA4 LINE L1 -2 6153 5897 1914 27 0 0 chr1 109584156 109584376 -133079977 + L1PA4 LINE L1 5680 5899 -256 1570 168 22 62 chr1 109584544 109584866 -133079487 - AluJo SINE Alu -3 309 1 258 287 53 21 chr1 109585376 109585470 -133078883 - MER21B LTR ERV1 -69 794 698 577 180 20 10 chr1 109585506 109585606 -133078747 - MER21B LTR ERV1 -159 704 604 4923 132 49 46 chr1 109585606 109586178 -133078175 + MER4D LTR ERV1 6 584 -319 2265 97 13 0 chr1 109586178 109586477 -133077876 - AluSp SINE Alu -6 307 5 4923 132 49 46 chr1 109586477 109586799 -133077554 + MER4D LTR ERV1 584 903 0 1811 246 63 15 chr1 109586801 109587264 -133077089 - MER21B LTR ERV1 -276 587 103 250 204 0 0 chr1 109587307 109587351 -133077002 - MER50-int LTR ERV1 -7161 44 1 3903 151 47 21 chr1 109587352 109588033 -133076320 - MER50 LTR ERV1 -23 711 13 490 222 0 11 chr1 109588047 109588137 -133076216 - MER21B LTR ERV1 -774 89 1 197 73 0 49 chr1 109588349 109588390 -133075963 + (TTTAA)n Simple_repeat Simple_repeat 1 39 0 654 227 126 13 chr1 109588396 109588733 -133075620 - LTR16C LTR ERVL -14 477 71 3808 237 100 52 chr1 109588830 109589060 -133075293 + L2 LINE L2 1750 1968 -1345 1109 186 207 37 chr1 109589060 109589302 -133075051 - AluJo SINE Alu -18 284 2 3808 237 100 52 chr1 109589302 109590081 -133074272 + L2 LINE L2 1968 2883 -430 2165 110 0 7 chr1 109590081 109590372 -133073981 - AluSx SINE Alu -23 289 1 3808 237 100 52 chr1 109590372 109590809 -133073544 + L2 LINE L2 2883 3298 -15 1659 192 3 23 chr1 109590947 109591249 -133073104 - AluJo SINE Alu -14 298 3 2099 134 7 0 chr1 109591277 109591576 -133072777 + AluSx SINE Alu 1 301 -11 25 51 0 0 chr1 109593707 109593746 -133070607 + AT_rich Low_complexity Low_complexity 1 39 0 264 284 0 25 chr1 109593914 109593995 -133070358 - MER58A DNA MER1_type 0 115 37 202 341 65 7 chr1 109594051 109594189 -133070164 - L2 LINE L2 -1832 1482 1337 621 294 107 63 chr1 109594335 109594887 -133069466 + MLT1K LTR MaLR 5 580 -8 1114 283 55 31 chr1 109595086 109595507 -133068846 - L2 LINE L2 0 3313 2883 216 333 0 0 chr1 109596034 109596094 -133068259 - L2 LINE L2 -361 2911 2852 1707 160 7 47 chr1 109596123 109596423 -133067930 + AluJb SINE Alu 2 289 -23 396 0 0 0 chr1 109596424 109596468 -133067885 + (CA)n Simple_repeat Simple_repeat 1 44 0 2304 107 0 0 chr1 109596748 109597046 -133067307 + AluSx SINE Alu 1 298 -14 1097 129 4 13 chr1 109597575 109597807 -133066546 + (GGAA)n Simple_repeat Simple_repeat 2 231 0 1886 166 0 10 chr1 109597925 109598221 -133066132 - AluJo SINE Alu -19 293 1 826 283 51 0 chr1 109599155 109599392 -133064961 + MIR SINE MIR 12 260 -2 642 175 105 7 chr1 109599642 109599785 -133064568 - MER20 DNA MER1_type -62 157 1 181 268 146 49 chr1 109599953 109600035 -133064318 + L2 LINE L2 3223 3312 -1 1386 187 127 4 chr1 109600078 109600198 -133064155 + AluJo SINE Alu 1 105 -197 198 0 0 0 chr1 109600198 109600220 -133064133 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1386 187 127 4 chr1 109600220 109600367 -133063986 + AluJo SINE Alu 105 301 -1 265 355 36 0 chr1 109600826 109600936 -133063417 - L3 LINE CR1 -831 746 633 429 121 0 132 chr1 109601937 109602028 -133062325 + FLAM_A SINE Alu 38 116 -26 2260 71 3 3 chr1 109602030 109602346 -133062007 - AluY SINE Alu 0 316 1 240 35 0 0 chr1 109602388 109602417 -133061936 + (CA)n Simple_repeat Simple_repeat 2 30 0 2036 182 127 3 chr1 109602784 109603163 -133061190 - MSTB LTR MaLR 0 426 1 9824 169 32 6 chr1 109603163 109604772 -133059581 - MSTB-int LTR MaLR 0 1651 1 2609 154 36 24 chr1 109604772 109605138 -133059215 - MSTB LTR MaLR 0 426 53 2206 109 0 0 chr1 109605138 109605443 -133058910 - AluSg SINE Alu 0 310 1 2609 154 36 24 chr1 109605443 109605497 -133058856 - MSTB LTR MaLR -373 53 1 219 155 35 17 chr1 109606043 109606113 -133058240 + (TA)n Simple_repeat Simple_repeat 1 68 -434 1860 159 20 92 chr1 109606113 109606504 -133057849 - MLT1A1 LTR MaLR -2 363 1 219 155 35 17 chr1 109606504 109606537 -133057816 + (TA)n Simple_repeat Simple_repeat 68 502 0 1331 238 26 42 chr1 109606624 109607126 -133057227 - L1MEc LINE L1 -3653 2562 2109 925 330 31 9 chr1 109607243 109607689 -133056664 - L1ME3A LINE L1 -220 5950 5495 1060 144 104 6 chr1 109607721 109607894 -133056459 + AluJb SINE Alu 1 190 -122 1201 227 90 58 chr1 109607896 109608596 -133055757 + MER52A LTR ERV1 281 1352 -300 1312 212 0 4 chr1 109608695 109608940 -133055413 + AluJo SINE Alu 52 295 -17 405 194 11 21 chr1 109608941 109609034 -133055319 - L1ME3A LINE L1 -698 5472 5381 843 251 79 13 chr1 109609036 109609339 -133055014 - L1ME3A LINE L1 -3147 2999 2677 339 25 0 0 chr1 109609817 109609857 -133054496 + (ATATG)n Simple_repeat Simple_repeat 4 43 0 2876 150 107 57 chr1 109609931 109610585 -133053768 + L1MC1 LINE L1 5377 6060 -273 2033 136 58 53 chr1 109610585 109610961 -133053392 + MER83B LTR ERV1 1 378 0 1821 175 0 3 chr1 109661015 109661307 -133003046 + AluJb SINE Alu 1 291 -21 944 155 9 61 chr1 109661636 109661849 -133002504 + L1M4 LINE L1 4760 4961 -1185 1774 175 53 14 chr1 109661849 109662164 -133002189 + MLT1A1 LTR MaLR 1 388 -40 1874 144 20 23 chr1 109662164 109662469 -133001884 + AluJb SINE Alu 1 304 -8 1774 175 53 14 chr1 109662469 109662512 -133001841 + MLT1A1 LTR MaLR 388 428 0 1446 150 8 4 chr1 109662512 109662766 -133001587 + L1MA8 LINE L1 3838 4092 -2054 1577 145 50 37 chr1 109662766 109663116 -133001237 - THE1C LTR MaLR 0 364 1 6267 140 47 43 chr1 109663116 109663787 -133000566 + L1MA8 LINE L1 4088 4755 -1536 1650 192 7 3 chr1 109663787 109664074 -133000279 + AluJo SINE Alu 1 288 -24 6267 140 47 43 chr1 109664074 109664097 -133000256 + L1MA8 LINE L1 4755 4776 -1515 804 149 0 0 chr1 109664097 109664218 -133000135 + FLAM_A SINE Alu 1 121 -12 6267 140 47 43 chr1 109664218 109664322 -133000031 + L1MA8 LINE L1 4776 4878 -1413 1589 183 7 27 chr1 109664322 109664623 -132999730 - AluJo SINE Alu -17 295 1 6267 140 47 43 chr1 109664623 109665743 -132998610 + L1MA8 LINE L1 4878 6010 -281 238 211 39 0 chr1 109665750 109665802 -132998551 + MLT1A1 LTR MaLR 312 365 0 1246 195 19 35 chr1 109665802 109665838 -132998515 + L1M4 LINE L1 4957 4992 -1154 2405 28 42 0 chr1 109665838 109666125 -132998228 + AluY SINE Alu 1 299 -12 1246 195 19 35 chr1 109666125 109666270 -132998083 + L1M4 LINE L1 4992 5133 -1013 791 197 7 20 chr1 109666270 109666422 -132997931 + FRAM SINE Alu 5 154 -12 1246 195 19 35 chr1 109666422 109666557 -132997796 + L1M4 LINE L1 5133 5269 -877 509 207 0 0 chr1 109666558 109666645 -132997708 - Tigger3(Golem) DNA MER2_type -3 3026 2940 286 128 0 0 chr1 109666648 109666695 -132997658 - L1MB2 LINE L1 -10 6161 6115 189 0 0 0 chr1 109666695 109666716 -132997637 + (T)n Simple_repeat Simple_repeat 1 21 0 459 183 0 19 chr1 109666838 109666942 -132997411 - AluY SINE Alu -209 102 1 591 104 31 0 chr1 109666943 109667106 -132997247 - L1MB3 LINE L1 -48 6135 5824 336 237 85 85 chr1 109667332 109667450 -132996903 - LTR67 LTR ERVL -404 153 36 825 181 77 0 chr1 109667834 109667989 -132996364 - AluJb SINE Alu -11 301 135 195 69 0 0 chr1 109667990 109668019 -132996334 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 863 108 0 15 chr1 109668057 109668187 -132996166 - FLAM_C SINE Alu 0 143 16 529 292 19 0 chr1 109668427 109668581 -132995772 + L1MC4a LINE L1 5769 5925 -1883 317 250 34 61 chr1 109670239 109670387 -132993966 - HAL1 LINE L1 -30 2477 2334 290 60 3 0 chr1 109670547 109670590 -132993763 + AluYa5/8 SINE Alu 198 234 -67 2124 112 20 3 chr1 109670800 109671096 -132993257 - AluSq SINE Alu -12 301 1 798 249 110 50 chr1 109671121 109671720 -132992633 - L1ME LINE L1 -423 5739 5178 1588 137 181 63 chr1 109671720 109671759 -132992594 - MSTA LTR MaLR 0 428 395 1363 217 37 0 chr1 109671759 109672059 -132992294 + AluJb SINE Alu 1 311 -1 1588 137 181 63 chr1 109672059 109672400 -132991953 - MSTA LTR MaLR -33 395 3 798 249 110 50 chr1 109672400 109672619 -132991734 - L1ME LINE L1 -984 5178 4974 2141 121 0 3 chr1 109672619 109672916 -132991437 + AluJb SINE Alu 1 296 -16 798 249 110 50 chr1 109672916 109673922 -132990431 - L1ME LINE L1 -1188 4974 3802 1299 92 0 0 chr1 109673939 109674140 -132990213 - AluSx SINE Alu 0 321 121 588 133 0 0 chr1 109674142 109674240 -132990113 - AluSx SINE Alu 0 310 213 2479 71 0 0 chr1 109674243 109674539 -132989814 - AluY SINE Alu -15 296 1 367 68 17 34 chr1 109674541 109674600 -132989753 - AluSx SINE Alu -168 135 78 1308 150 5 9 chr1 109674600 109674813 -132989540 - AluSx SINE Alu -100 212 1 609 253 44 61 chr1 109674814 109675110 -132989243 - L1ME LINE L1 -2359 3787 3497 1473 262 61 46 chr1 109675147 109675417 -132988936 - L1ME LINE L1 -2988 3158 2894 1912 161 0 7 chr1 109675417 109675727 -132988626 + AluJo SINE Alu 5 312 0 1473 262 61 46 chr1 109675727 109676322 -132988031 - L1ME LINE L1 -3252 2894 2280 966 195 11 0 chr1 109676337 109676511 -132987842 + AluJb SINE Alu 133 308 -4 181 125 21 21 chr1 109676530 109676578 -132987775 + GA-rich Low_complexity Low_complexity 4 51 0 2664 146 57 2 chr1 109676581 109677088 -132987265 - L1MB7 LINE L1 -19 6165 5631 225 229 0 0 chr1 109677215 109677263 -132987090 + L1P5 LINE L1 5405 5452 -702 718 285 39 14 chr1 109677272 109677553 -132986800 + L1ME LINE L1 5506 5793 -369 415 250 125 12 chr1 109677548 109677708 -132986645 - L1MC4a LINE L1 -1941 5867 5690 * 263 347 74 0 chr1 109677741 109677836 -132986517 - L1MC4a LINE L1 -2199 5609 5508 273 253 13 0 chr1 109678035 109678110 -132986243 - L1ME LINE L1 -303 5818 5743 238 231 0 15 chr1 109678287 109678352 -132986001 - L1ME LINE L1 -347 5774 5711 398 337 16 26 chr1 109678369 109678562 -132985791 + MIR SINE MIR 71 261 -1 183 311 49 16 chr1 109679101 109679162 -132985191 + L2 LINE L2 3191 3253 -19 2229 105 0 3 chr1 109679386 109679721 -132984632 - AluSx SINE Alu 0 334 1 382 306 119 33 chr1 109679816 109680176 -132984177 - MLT1L LTR MaLR -100 515 125 469 248 50 8 chr1 109680303 109680424 -132983929 - MLT1L LTR MaLR -363 252 127 1304 113 5 47 chr1 109680424 109680637 -132983716 - THE1B LTR MaLR 0 364 161 4319 82 2 0 chr1 109680637 109681210 -132983143 - THE1B-int LTR MaLR -1006 574 1 1197 109 73 73 chr1 109681214 109681406 -132982947 - THE1B LTR MaLR -4 360 180 1217 129 0 0 chr1 109681411 109681581 -132982772 + AluSp SINE Alu 136 305 -8 1068 139 69 0 chr1 109681581 109681754 -132982599 - THE1B LTR MaLR -190 185 1 351 252 57 24 chr1 109681930 109682053 -132982300 - MER31B LTR ERV1 -339 127 1 1656 154 16 39 chr1 109682447 109682753 -132981600 + AluJo SINE Alu 3 301 -11 517 255 181 0 chr1 109682932 109683081 -132981272 - MER5A DNA MER1_type 0 189 14 970 114 0 0 chr1 109683360 109683492 -132980861 - AluSg/x SINE Alu -12 298 167 1038 141 0 0 chr1 109683592 109683734 -132980619 - AluSq/x SINE Alu -171 142 1 650 150 0 0 chr1 109683808 109683908 -132980445 + FLAM_C SINE Alu 17 116 -27 22 0 0 0 chr1 109683908 109683930 -132980423 + AT_rich Low_complexity Low_complexity 1 22 0 344 329 73 7 chr1 109683945 109684082 -132980271 - MIR3 SINE MIR -8 200 55 1852 137 51 3 chr1 109684860 109685153 -132979200 - AluSg SINE Alu -3 307 1 4015 163 21 16 chr1 109685378 109685579 -132978774 + L1MB7 LINE L1 5403 5601 -583 2018 150 0 0 chr1 109685579 109685873 -132978480 + AluJb SINE Alu 1 294 -18 4015 163 21 16 chr1 109685873 109686440 -132977913 + L1MB7 LINE L1 5601 6175 -9 24 0 0 0 chr1 109686576 109686600 -132977753 + AT_rich Low_complexity Low_complexity 1 24 0 2129 104 10 3 chr1 109686602 109686899 -132977454 + AluSq SINE Alu 1 299 -14 29 0 0 0 chr1 109687662 109687691 -132976662 + AT_rich Low_complexity Low_complexity 1 29 0 352 160 53 0 chr1 109688009 109688084 -132976269 - LTR16A LTR ERVL -237 213 135 268 327 180 34 chr1 109688257 109688673 -132975680 - L2 LINE L2 -354 2960 2484 862 204 51 0 chr1 109688673 109688849 -132975504 - MIR SINE MIR -43 219 35 2532 31 3 0 chr1 109689771 109690062 -132974291 + AluY SINE Alu 1 292 -19 2168 115 45 22 chr1 109691004 109691360 -132972993 - THE1B LTR MaLR 0 364 1 1711 153 11 31 chr1 109691514 109691801 -132972552 - AluJb SINE Alu -21 291 11 426 162 0 0 chr1 109692533 109692601 -132971752 - AluS SINE Alu -235 68 1 579 194 82 30 chr1 109692680 109692814 -132971539 - MIR SINE MIR -120 142 2 745 156 8 8 chr1 109693109 109693231 -132971122 + FLAM_C SINE Alu 1 122 -11 195 289 19 0 chr1 109693562 109693614 -132970739 + MIR3 SINE MIR 153 205 -3 1018 150 40 0 chr1 109694586 109694759 -132969594 + FRAM SINE Alu 1 176 0 1516 186 83 0 chr1 109694818 109695205 -132969148 - L1P LINE L1 -767 5398 4989 191 324 203 0 chr1 109695299 109695373 -132968980 - L2 LINE L2 0 3272 3184 1801 157 0 0 chr1 109695480 109695748 -132968605 + AluSq SINE Alu 1 268 -45 243 0 0 0 chr1 109696525 109696552 -132967801 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 970 189 0 0 chr1 109696554 109696713 -132967640 - FAM SINE Alu -16 159 1 197 238 133 106 chr1 109697184 109697356 -132966997 - L2 LINE L2 -798 2516 2333 2071 102 30 23 chr1 109697356 109697661 -132966692 - AluSp SINE Alu -6 307 1 197 238 133 106 chr1 109697661 109697744 -132966609 - L2 LINE L2 -981 2333 2254 1066 198 22 40 chr1 109698296 109698523 -132965830 - MIR SINE MIR -2 260 38 23 0 0 0 chr1 109699309 109699332 -132965021 + AT_rich Low_complexity Low_complexity 1 23 0 39 38 0 0 chr1 109699598 109699651 -132964702 + AT_rich Low_complexity Low_complexity 1 53 0 230 116 23 0 chr1 109700982 109701025 -132963328 + GA-rich Low_complexity Low_complexity 3 46 0 322 173 0 0 chr1 109701171 109701223 -132963130 - L2 LINE L2 0 3272 3221 2004 83 75 4 chr1 109701724 109702002 -132962351 + AluSc SINE Alu 1 298 -11 329 297 189 96 chr1 109702130 109702484 -132961869 - L2 LINE L2 0 3272 2886 1443 203 48 0 chr1 109702634 109702905 -132961448 - AluJo SINE Alu -28 284 1 1858 121 90 16 chr1 109703219 109703542 -132960811 - MER7A DNA MER2_type 0 346 2 562 244 278 10 chr1 109703682 109703887 -132960466 - MIR SINE MIR 0 262 3 204 132 26 0 chr1 109704804 109704842 -132959511 + (TG)n Simple_repeat Simple_repeat 1 39 0 218 322 0 81 chr1 109705567 109705654 -132958699 - MIR SINE MIR -40 168 88 381 317 122 45 chr1 109705695 109706162 -132958191 + L2 LINE L2 2140 2642 -672 312 332 43 79 chr1 109706222 109706475 -132957878 + L2 LINE L2 2977 3220 -52 199 364 50 36 chr1 109706603 109706743 -132957610 + L2 LINE L2 2918 3059 -213 1571 186 0 8 chr1 109706875 109707139 -132957214 + AluJo SINE Alu 1 262 -50 245 267 0 50 chr1 109707183 109707243 -132957110 - MIR SINE MIR -133 75 19 23 33 0 0 chr1 109708751 109708781 -132955572 + AT_rich Low_complexity Low_complexity 1 30 0 279 331 13 53 chr1 109708976 109709127 -132955226 - L2 LINE L2 0 3313 3169 23 54 0 0 chr1 109709338 109709375 -132954978 + AT_rich Low_complexity Low_complexity 1 37 0 899 136 0 0 chr1 109709408 109709540 -132954813 + AluJo SINE Alu 2 133 -169 957 149 167 0 chr1 109709614 109709788 -132954565 + MER3 DNA MER1_type 4 206 -3 267 274 57 109 chr1 109710358 109710533 -132953820 + L2 LINE L2 200 365 -2949 747 255 32 65 chr1 109710758 109711009 -132953344 + LTR40a LTR ERVL 1 242 -277 1944 138 0 17 chr1 109711009 109711305 -132953048 + AluJo SINE Alu 1 291 -21 747 255 32 65 chr1 109711305 109711363 -132952990 + LTR40a LTR ERVL 242 300 -219 309 200 0 13 chr1 109711895 109711970 -132952383 - HsTC2a DNA Tc2 -13 729 656 613 83 18 37 chr1 109712067 109712176 -132952177 - L1MA8 LINE L1 -29 6262 6156 340 146 135 10 chr1 109712178 109712274 -132952079 - MER104 DNA Tc2 -72 108 1 2268 120 3 3 chr1 109712354 109712695 -132951658 - MER7A DNA MER2_type -6 340 2 496 243 128 66 chr1 109712779 109713022 -132951331 + MIR SINE MIR 5 262 0 1018 157 55 46 chr1 109713291 109713508 -132950845 - MER20 DNA MER1_type 0 219 1 2008 90 6 81 chr1 109714420 109714742 -132949611 - AluSx SINE Alu -14 298 1 506 286 33 44 chr1 109716009 109716191 -132948162 - MIR3 SINE MIR -28 180 1 467 317 144 14 chr1 109716307 109716515 -132947838 - L2 LINE L2 0 3272 3038 182 295 189 21 chr1 109716492 109716587 -132947766 + MIR SINE MIR 31 141 -67 * 1091 141 66 23 chr1 109716881 109717137 -132947216 + MER33 DNA MER1_type 5 271 -53 1001 207 11 5 chr1 109717137 109717325 -132947028 + AluJo SINE Alu 122 310 -2 5044 152 47 35 chr1 109717465 109717628 -132946725 - L1 LINE L1 -1281 4865 4705 2417 82 3 0 chr1 109717628 109717932 -132946421 - AluSx SINE Alu -7 305 1 5044 152 47 35 chr1 109717932 109718824 -132945529 - L1 LINE L1 -1441 4705 3792 2390 82 3 7 chr1 109718824 109719128 -132945225 - AluSp SINE Alu -10 303 1 5044 152 47 35 chr1 109719128 109719239 -132945114 - L1 LINE L1 -2354 3792 3684 203 236 0 36 chr1 109719507 109719562 -132944791 - L2 LINE L2 -38 3234 3182 2208 96 28 3 chr1 109719596 109719887 -132944466 - AluSx SINE Alu -14 298 1 249 314 58 73 chr1 109719887 109720205 -132944148 + L2 LINE L2 1918 2232 -1082 266 310 90 0 chr1 109720758 109720858 -132943495 + L2 LINE L2 2685 2793 -521 209 318 62 31 chr1 109721590 109721719 -132942634 + L3 LINE CR1 1408 1540 -37 1958 152 7 3 chr1 109722220 109722517 -132941836 + AluJb SINE Alu 9 306 -6 2308 93 0 0 chr1 109722518 109722808 -132941545 + AluSc SINE Alu 1 290 -19 556 262 73 39 chr1 109723258 109723464 -132940889 - MIR SINE MIR -28 234 22 2373 86 0 13 chr1 109723832 109724135 -132940218 - AluSc SINE Alu -10 299 1 2362 104 0 16 chr1 109724174 109724490 -132939863 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 109724878 109724899 -132939454 + AT_rich Low_complexity Low_complexity 1 21 0 1244 127 0 11 chr1 109725434 109725615 -132938738 - AluSg/x SINE Alu 0 312 134 2156 129 0 0 chr1 109725615 109725917 -132938436 - AluSg1 SINE Alu -7 302 1 25 0 0 0 chr1 109726964 109726989 -132937364 + AT_rich Low_complexity Low_complexity 1 25 0 3477 76 85 21 chr1 109726989 109727148 -132937205 - L1MA3 LINE L1 0 6305 6158 180 0 0 0 chr1 109727148 109727168 -132937185 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2289 98 0 0 chr1 109727171 109727457 -132936896 - AluSc SINE Alu -23 286 1 3477 76 85 21 chr1 109727457 109727860 -132936493 - L1MA3 LINE L1 -148 6157 5703 1266 105 6 0 chr1 109727860 109728032 -132936321 + AluSp SINE Alu 126 298 -15 2570 117 66 26 chr1 109728033 109728665 -132935688 - L1MA3 LINE L1 -590 5715 5062 384 194 0 0 chr1 109728673 109728745 -132935608 + MER58A DNA MER1_type 47 118 0 2087 142 6 0 chr1 109728749 109729060 -132935293 - AluSq SINE Alu 0 313 1 254 250 163 0 chr1 109729326 109729418 -132934935 + MIR SINE MIR 119 225 -37 563 243 173 26 chr1 109729703 109729929 -132934424 + MIR SINE MIR 2 260 -2 239 216 27 0 chr1 109730146 109730220 -132934133 + (CATA)n Simple_repeat Simple_repeat 1 76 0 2099 116 16 19 chr1 109730551 109730861 -132933492 - AluSx SINE Alu -3 309 1 22 0 0 0 chr1 109730921 109730943 -132933410 + AT_rich Low_complexity Low_complexity 1 22 0 246 174 0 0 chr1 109730954 109731000 -132933353 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 973 258 98 16 chr1 109731760 109732128 -132932225 - MLT1J LTR MaLR 0 511 114 266 237 237 9 chr1 109733723 109733837 -132930516 - MER58C DNA MER1_type 0 215 76 918 129 0 0 chr1 109734209 109734333 -132930020 + AluSq/x SINE Alu 10 133 -179 418 238 8 0 chr1 109734420 109734542 -132929811 - L1MB7 LINE L1 -2 6182 6060 234 62 0 0 chr1 109734544 109734576 -132929777 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 351 0 0 0 chr1 109734672 109734711 -132929642 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 857 182 26 13 chr1 109734764 109734918 -132929435 + FRAM SINE Alu 1 156 -20 1839 153 25 0 chr1 109734926 109735208 -132929145 + AluJb SINE Alu 1 289 -23 237 65 0 0 chr1 109735510 109735541 -132928812 + (TG)n Simple_repeat Simple_repeat 2 32 0 2002 106 39 0 chr1 109735553 109735835 -132928518 - AluSg SINE Alu -17 293 1 964 208 20 12 chr1 109735867 109736112 -132928241 - L1ME1 LINE L1 -96 6070 5824 1160 162 0 0 chr1 109736118 109736297 -132928056 - AluJb SINE Alu 0 312 134 1708 131 81 39 chr1 109736297 109736580 -132927773 - AluJb SINE Alu -17 295 1 408 171 36 50 chr1 109736845 109737099 -132927254 + CT-rich Low_complexity Low_complexity 1 250 0 379 196 31 0 chr1 109737133 109737230 -132927123 + CT-rich Low_complexity Low_complexity 3 102 0 557 192 92 0 chr1 109737258 109737378 -132926975 - FLAM_A SINE Alu -2 131 1 997 87 255 11 chr1 109737831 109738015 -132926338 - MER30 DNA MER1_type 0 230 2 2678 33 0 0 chr1 109738114 109738420 -132925933 + AluY SINE Alu 1 306 -5 701 190 0 0 chr1 109738426 109738542 -132925811 - FLAM_C SINE Alu -25 118 3 1096 184 0 31 chr1 109738649 109738872 -132925481 - AluJb SINE Alu -11 301 86 1650 156 18 14 chr1 109738935 109739210 -132925143 + AluJb SINE Alu 1 276 -36 2087 106 4 0 chr1 109740118 109740418 -132923935 + AluSq SINE Alu 12 312 0 1209 287 107 24 chr1 109741376 109741922 -132922431 - L2 LINE L2 0 3313 2717 1545 178 3 62 chr1 109742577 109742886 -132921467 + AluJb SINE Alu 1 291 -21 319 252 107 38 chr1 109742904 109743035 -132921318 - L1M4 LINE L1 -2276 3870 3731 275 292 117 35 chr1 109744008 109744179 -132920174 + Charlie8 DNA MER1_type 77 261 -2156 791 317 184 8 chr1 109744298 109744787 -132919566 + L2 LINE L2 2213 2787 -527 520 327 154 18 chr1 109744839 109745169 -132919184 + L2 LINE L2 2929 3303 -10 311 387 32 0 chr1 109745185 109745309 -132919044 + MIR3 SINE MIR 52 179 -29 232 313 60 0 chr1 109745408 109745475 -132918878 - L2 LINE L2 -40 3232 3162 2158 116 0 13 chr1 109745699 109746001 -132918352 + AluSq SINE Alu 1 298 -15 2090 115 6 16 chr1 109746001 109746313 -132918040 + AluSg SINE Alu 1 309 -1 1783 157 4 0 chr1 109747117 109747384 -132916969 - AluJo SINE Alu -44 268 1 629 260 120 10 chr1 109747859 109748059 -132916294 - MIR SINE MIR -14 248 27 26 30 0 0 chr1 109748689 109748722 -132915631 + AT_rich Low_complexity Low_complexity 1 33 0 1663 155 14 37 chr1 109750194 109750490 -132913863 + AluSx SINE Alu 1 289 -23 685 174 0 9 chr1 109750590 109750705 -132913648 + FLAM_A SINE Alu 23 136 -6 2259 87 21 0 chr1 109751005 109751292 -132913061 + AluSq SINE Alu 1 293 -20 899 143 21 7 chr1 109751302 109751442 -132912911 + AluJ SINE Alu 1 142 -170 370 147 0 0 chr1 109751445 109751509 -132912844 + AluJb SINE Alu 200 256 -46 2043 133 7 13 chr1 109752773 109753082 -132911271 - AluSx SINE Alu -5 307 1 27 49 0 0 chr1 109754743 109754784 -132909569 + AT_rich Low_complexity Low_complexity 1 41 0 1151 187 21 121 chr1 109757920 109758252 -132906101 - AluJb SINE Alu -3 299 1 1993 139 10 7 chr1 109758386 109758689 -132905664 - AluSq SINE Alu -9 304 1 1745 171 4 0 chr1 109759712 109759986 -132904367 - AluJb SINE Alu -27 285 11 269 217 0 67 chr1 109760045 109760105 -132904248 + AluSg/x SINE Alu 120 170 -132 883 185 40 0 chr1 109760106 109760257 -132904096 + AluJo/FRAM SINE Alu 142 298 -14 1801 255 128 35 chr1 109760268 109761625 -132902728 + L1MEc LINE L1 745 2226 -4170 307 253 130 0 chr1 109761657 109761819 -132902534 + L1MEc LINE L1 2287 2469 -3927 909 241 130 62 chr1 109762381 109762429 -132901924 + L1ME1 LINE L1 762 805 -5604 1851 154 36 0 chr1 109762429 109762709 -132901644 + AluSx SINE Alu 1 290 -22 909 241 130 62 chr1 109762709 109763274 -132901079 + L1ME1 LINE L1 805 1417 -4992 871 163 0 0 chr1 109763301 109763442 -132900911 + AluJb SINE Alu 170 310 -2 1650 229 86 50 chr1 109763442 109763970 -132900383 + L1ME1 LINE L1 1433 2001 -4405 2190 122 0 0 chr1 109763970 109764281 -132900072 - AluY SINE Alu 0 311 1 1650 229 86 50 chr1 109764281 109764551 -132899802 + L1ME1 LINE L1 2001 2260 -4146 891 210 17 0 chr1 109764577 109764753 -132899600 - AluJb SINE Alu 0 312 134 240 152 0 0 chr1 109764773 109764819 -132899534 - L1M4 LINE L1 -3299 2847 2802 326 197 0 0 chr1 109764822 109764883 -132899470 - L1M4 LINE L1 -3401 2745 2685 1944 161 3 3 chr1 109764885 109765196 -132899157 + AluJb SINE Alu 1 311 -1 7398 223 71 22 chr1 109765196 109765977 -132898376 + L1ME1 LINE L1 3186 3927 -2499 1923 129 3 43 chr1 109765977 109766302 -132898051 + AluSx SINE Alu 1 312 0 7398 223 71 22 chr1 109766302 109766652 -132897701 + L1ME1 LINE L1 3927 4258 -2168 1696 175 7 16 chr1 109766652 109766961 -132897392 + AluJb SINE Alu 1 306 -6 7398 223 71 22 chr1 109766961 109768240 -132896113 + L1ME1 LINE L1 4258 5473 -953 2114 118 7 3 chr1 109768240 109768536 -132895817 + AluSx SINE Alu 1 297 -15 7398 223 71 22 chr1 109768536 109768949 -132895404 + L1ME1 LINE L1 5473 5864 -562 1923 161 0 16 chr1 109768949 109769266 -132895087 + AluJb SINE Alu 1 312 0 7398 223 71 22 chr1 109769266 109769519 -132894834 + L1ME1 LINE L1 5864 6420 -6 703 194 0 8 chr1 109769691 109769820 -132894533 + FLAM_A SINE Alu 1 128 -5 252 258 73 16 chr1 109769831 109769955 -132894398 + L1P5 LINE L1 5328 5458 -696 601 270 80 29 chr1 109769968 109770242 -132894111 + L1MC4a LINE L1 5612 5899 -1909 220 299 0 0 chr1 109770252 109770319 -132894034 + (TA)n Simple_repeat Simple_repeat 2 68 0 2140 113 3 0 chr1 109771391 109771675 -132892678 + AluSx SINE Alu 1 285 -27 207 100 0 0 chr1 109771675 109771705 -132892648 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 509 193 44 52 chr1 109771745 109771880 -132892473 + L2 LINE L2 3180 3313 0 232 304 0 0 chr1 109772291 109772360 -132891993 + Charlie7 DNA MER1_type 33 101 -2511 577 276 99 33 chr1 109772404 109772647 -132891706 - MIR SINE MIR 0 262 4 21 82 0 0 chr1 109773494 109773543 -132890810 + AT_rich Low_complexity Low_complexity 1 49 0 2092 113 10 7 chr1 109773801 109774101 -132890252 + AluSx SINE Alu 1 301 -11 2610 225 28 16 chr1 109775264 109775869 -132888484 - MER90 LTR ERV1 0 614 3 1983 140 0 20 chr1 109775872 109776172 -132888181 - AluSx SINE Alu -18 294 1 849 219 0 0 chr1 109776213 109776373 -132887980 + FRAM SINE Alu 1 160 -16 2348 68 4 0 chr1 109776653 109776962 -132887391 + AluY SINE Alu 1 310 0 27 29 0 0 chr1 109777376 109777410 -132886943 + AT_rich Low_complexity Low_complexity 1 34 0 1819 148 3 29 chr1 109777970 109778280 -132886073 + AluJb SINE Alu 1 302 -10 373 245 107 71 chr1 109780072 109780325 -132884028 + MIR SINE MIR 1 262 0 891 74 25 0 chr1 109780893 109781014 -132883339 + L1PA10 LINE L1 6045 6168 0 1121 225 0 0 chr1 109781080 109781293 -132883060 + MIR SINE MIR 49 261 -1 652 245 87 43 chr1 109782574 109782966 -132881387 - L1ME4a LINE L1 -70 6051 5643 827 275 0 0 chr1 109784157 109784335 -132880018 + MER5A DNA MER1_type 1 178 -11 807 234 11 0 chr1 109784508 109784683 -132879670 + L1PA16 LINE L1 5967 6143 -23 2355 60 0 63 chr1 109784733 109785065 -132879288 + AluY SINE Alu 1 311 0 663 204 0 15 chr1 109785292 109785424 -132878929 + FLAM_A SINE Alu 9 138 -4 315 304 130 62 chr1 109785440 109785808 -132878545 + L1ME3 LINE L1 3383 3724 -2422 1472 176 0 107 chr1 109785808 109786144 -132878209 + AluJb SINE Alu 1 300 -2 315 304 130 62 chr1 109786144 109786649 -132877704 + L1ME3 LINE L1 3724 4316 -1830 225 171 0 24 chr1 109786767 109786808 -132877545 + GA-rich Low_complexity Low_complexity 2 41 0 1783 159 30 3 chr1 109786954 109787249 -132877104 + AluJb SINE Alu 3 305 -7 298 271 105 24 chr1 109787258 109787505 -132876848 + L1ME3 LINE L1 4896 5162 -984 501 286 50 0 chr1 109787602 109787801 -132876552 + L1ME3 LINE L1 5189 5397 -749 1721 217 122 21 chr1 109787833 109788358 -132875995 + L1ME3 LINE L1 5542 6119 -43 2124 124 10 0 chr1 109788418 109788716 -132875637 + AluSq SINE Alu 1 301 -12 304 296 34 57 chr1 109788737 109788777 -132875576 + L1M4 LINE L1 5272 5311 -873 2180 115 3 10 chr1 109788777 109789082 -132875271 + AluSg SINE Alu 1 303 -7 304 296 34 57 chr1 109789082 109789217 -132875136 + L1M4 LINE L1 5311 5443 -741 244 301 79 61 chr1 109789263 109789444 -132874909 + L1ME4a LINE L1 5296 5487 -2321 2219 105 17 0 chr1 109789444 109789739 -132874614 + AluSp SINE Alu 1 300 -13 244 301 79 61 chr1 109789739 109789899 -132874454 + L1ME4a LINE L1 5487 5643 -2165 302 257 52 10 chr1 109789911 109790074 -132874279 + L1ME4a LINE L1 5701 5819 -302 365 202 104 49 chr1 109790188 109790371 -132873982 + L1ME4a LINE L1 5926 6118 -3 2150 170 81 2 chr1 109790943 109791337 -132873016 + MSTB LTR MaLR 2 426 0 406 147 44 15 chr1 109791932 109792000 -132872353 + MER5A DNA MER1_type 34 103 -86 2702 10 0 16 chr1 109792172 109792476 -132871877 + AluYa5 SINE Alu 1 299 -12 255 325 67 3 chr1 109792486 109792611 -132871742 - MIR SINE MIR -72 136 30 461 238 116 31 chr1 109793217 109793451 -132870902 + L1MC5 LINE L1 7000 7250 -728 24 0 0 0 chr1 109793906 109793930 -132870423 + AT_rich Low_complexity Low_complexity 1 24 0 2294 113 0 0 chr1 109793950 109794252 -132870101 - AluSg SINE Alu -8 302 1 1734 178 3 3 chr1 109795795 109796082 -132868271 - AluJb SINE Alu -24 288 2 1970 156 21 15 chr1 109796112 109796446 -132867907 - MER1B DNA MER1_type 0 337 2 294 29 0 0 chr1 109796625 109796660 -132867693 + (TG)n Simple_repeat Simple_repeat 1 35 0 38 22 0 0 chr1 109796669 109796714 -132867639 + AT_rich Low_complexity Low_complexity 1 45 0 2403 71 27 0 chr1 109796801 109797095 -132867258 + AluSc SINE Alu 1 302 -7 243 185 346 12 chr1 109797557 109797638 -132866715 + MIR SINE MIR 124 231 -31 1585 176 22 0 chr1 109797897 109798199 -132866154 + AluSx SINE Alu 1 308 0 575 198 0 0 chr1 109799106 109799212 -132865141 + FLAM_A SINE Alu 1 106 -36 282 297 14 0 chr1 109799242 109799316 -132865037 + MIR3 SINE MIR 116 190 -18 2088 122 0 0 chr1 109799426 109799732 -132864621 - AluSx SINE Alu 0 311 6 244 220 102 17 chr1 109800295 109800354 -132863999 - L2 LINE L2 -33 3280 3217 1662 194 10 3 chr1 109800357 109800651 -132863702 + AluJo SINE Alu 1 296 -16 227 293 253 0 chr1 109800819 109800962 -132863391 - MIR SINE MIR -48 214 38 945 238 104 0 chr1 109801347 109801578 -132862775 - MIR SINE MIR -2 260 6 229 297 16 16 chr1 109801702 109801766 -132862587 + L2 LINE L2 3204 3267 -5 1768 172 0 25 chr1 109801797 109802116 -132862237 + AluJo SINE Alu 1 311 -1 1168 165 52 0 chr1 109802148 109802360 -132861993 - MER58A DNA MER1_type 0 224 2 1330 112 14 56 chr1 109803817 109804031 -132860322 - AluJb SINE Alu -17 295 91 284 283 196 30 chr1 109804902 109805132 -132859221 - L3b LINE CR1 -204 1379 1112 1840 139 4 18 chr1 109805343 109805623 -132858730 + AluSx SINE Alu 1 276 -36 832 153 35 122 chr1 109806164 109806393 -132857960 + MER3 DNA MER1_type 1 209 0 537 272 110 45 chr1 109806425 109806734 -132857619 - MLT1J2 LTR MaLR -37 413 85 180 0 0 0 chr1 109807750 109807770 -132856583 + (CA)n Simple_repeat Simple_repeat 1 20 0 1130 176 45 93 chr1 109807770 109808060 -132856293 - AluJb SINE Alu -36 276 1 281 353 20 0 chr1 109808263 109808365 -132855988 + L2 LINE L2 3205 3308 -5 316 282 31 80 chr1 109809513 109809560 -132854793 + L1ME4a LINE L1 5762 5810 -311 1951 123 11 0 chr1 109809560 109809862 -132854491 - AluSg SINE Alu 0 305 1 316 282 31 80 chr1 109809862 109809976 -132854377 + L1ME4a LINE L1 5810 5916 -205 1622 190 9 35 chr1 109810120 109810292 -132854061 - AluJo SINE Alu -4 308 146 2135 102 0 26 chr1 109810292 109810596 -132853757 - AluSx SINE Alu -6 306 11 1622 190 9 35 chr1 109810596 109810739 -132853614 - AluJo SINE Alu -166 146 1 2377 93 0 0 chr1 109811625 109811925 -132852428 - AluSx SINE Alu -12 300 1 216 67 0 0 chr1 109812392 109812422 -132851931 + (A)n Simple_repeat Simple_repeat 1 30 0 306 269 0 0 chr1 109812652 109812719 -132851634 - L2 LINE L2 -1 3312 3246 697 163 103 16 chr1 109813049 109813233 -132851120 - MER5C DNA MER1_type -124 200 1 305 200 17 0 chr1 109813233 109813293 -132851060 - L2 LINE L2 -505 2809 2749 1433 226 189 34 chr1 109813293 109813789 -132850564 - L2 LINE L2 -857 2457 1885 2312 133 83 35 chr1 109813985 109814467 -132849886 + L1MB3 LINE L1 5673 6177 -6 413 310 35 0 chr1 109815009 109815125 -132849228 - MER5B DNA MER1_type -58 120 1 4958 82 1 8 chr1 109815556 109816265 -132848088 + L1P3 LINE L1 8 711 -5750 216 0 0 0 chr1 109816419 109816443 -132847910 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 273 175 35 18 chr1 109816473 109816563 -132847790 + AluYb8 SINE Alu 233 323 0 630 154 24 95 chr1 109816567 109816736 -132847617 + L1MA3 LINE L1 6149 6305 0 3062 195 13 0 chr1 109816739 109817453 -132846900 + L1PB2 LINE L1 4124 4846 -1300 2152 114 0 7 chr1 109817463 109817753 -132846600 + AluSp SINE Alu 18 305 -8 5585 94 39 1 chr1 109817753 109818681 -132845672 + L1PB2 LINE L1 5186 6145 -6 30 0 0 0 chr1 109818681 109818711 -132845642 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 109818804 109818825 -132845528 + AT_rich Low_complexity Low_complexity 1 21 0 2137 135 10 6 chr1 109819354 109819666 -132844687 + AluSq SINE Alu 1 313 0 2048 142 7 0 chr1 109820321 109820617 -132843736 - AluSx SINE Alu -14 298 1 2185 113 0 13 chr1 109821501 109821802 -132842551 + AluSg SINE Alu 3 299 -11 180 0 0 0 chr1 109823099 109823119 -132841234 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 28 29 0 0 chr1 109823598 109823633 -132840720 + GC_rich Low_complexity Low_complexity 1 35 0 189 323 42 31 chr1 109824345 109824441 -132839912 - MIR SINE MIR -77 185 89 434 202 56 126 chr1 109824804 109825013 -132839340 + L1MC4 LINE L1 7761 7944 -98 1944 196 141 31 chr1 109825013 109825524 -132838829 + MLT1F1 LTR MaLR 1 567 0 434 202 56 126 chr1 109825524 109825616 -132838737 + L1MC4 LINE L1 7944 8041 -1 2006 133 17 10 chr1 109825810 109826112 -132838241 - AluSq SINE Alu -9 304 1 1452 172 62 7 chr1 109826120 109826393 -132837960 - AluJo SINE Alu -24 288 1 441 289 107 0 chr1 109826596 109826717 -132837636 - L2 LINE L2 -1 3271 3138 273 293 73 0 chr1 109826788 109826870 -132837483 - L2 LINE L2 -16 3256 3169 723 152 152 0 chr1 109827009 109827173 -132837180 - MER2 DNA MER2_type -134 211 23 449 266 29 69 chr1 109828069 109828343 -132836010 + HAL1b LINE L1 343 605 -743 34 24 0 0 chr1 109828409 109828450 -132835903 + AT_rich Low_complexity Low_complexity 1 41 0 439 275 62 62 chr1 109828736 109828947 -132835406 + L1MC4a LINE L1 5927 6137 -1671 284 96 0 39 chr1 109828957 109829009 -132835344 - Alu SINE Alu -2 300 251 255 178 0 0 chr1 109829110 109829155 -132835198 + L1MC4a LINE L1 6629 6673 -1135 747 265 95 80 chr1 109829210 109829369 -132834984 + L1MC4 LINE L1 6788 6943 -1099 2283 87 0 3 chr1 109829369 109829658 -132834695 + AluSg SINE Alu 1 288 -22 747 265 95 80 chr1 109829658 109830196 -132834157 + L1MC4 LINE L1 6943 7495 -547 322 232 48 48 chr1 109830461 109830496 -132833857 + L1MC4 LINE L1 7689 7723 -319 1271 149 47 30 chr1 109830496 109830731 -132833622 - MER8 DNA MER2_type 0 239 1 322 232 48 48 chr1 109830731 109830863 -132833490 + L1MC4 LINE L1 7722 7856 -186 1534 101 46 0 chr1 109831621 109831838 -132832515 + MER30 DNA MER1_type 3 229 -1 2388 95 0 0 chr1 109832483 109832787 -132831566 + AluSx SINE Alu 1 304 -8 1156 245 57 69 chr1 109832913 109833420 -132830933 + MER77 LTR ERV1 99 599 -6 1781 170 3 19 chr1 109833586 109833903 -132830450 + AluJb SINE Alu 1 312 0 2303 74 37 0 chr1 109833975 109834272 -132830081 + AluSx SINE Alu 1 308 -4 1628 176 30 23 chr1 109834743 109835044 -132829309 - AluJo SINE Alu -9 303 1 24 32 0 0 chr1 109835472 109835503 -132828850 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr1 109836849 109836875 -132827478 + AT_rich Low_complexity Low_complexity 1 26 0 434 156 11 22 chr1 109837412 109837502 -132826851 + AluYb8 SINE Alu 118 206 -112 480 174 0 135 chr1 109837696 109837829 -132826524 - MER34 LTR ERV1 -450 115 1 391 275 27 14 chr1 109837970 109838270 -132826083 + CT-rich Low_complexity Low_complexity 1 304 0 400 86 0 0 chr1 109838409 109838467 -132825886 + AluSc SINE Alu 240 297 -12 210 37 0 0 chr1 109838491 109838518 -132825835 + (TG)n Simple_repeat Simple_repeat 2 28 0 2328 98 0 0 chr1 109838518 109838814 -132825539 - AluSg SINE Alu -12 298 3 2337 96 0 3 chr1 109839059 109839360 -132824993 - AluSc SINE Alu -9 300 1 26 30 0 0 chr1 109839711 109839744 -132824609 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr1 109839797 109839822 -132824531 + AT_rich Low_complexity Low_complexity 1 25 0 784 257 80 8 chr1 109840820 109841057 -132823296 - MIR SINE MIR -8 254 1 1731 163 24 7 chr1 109841398 109841692 -132822661 - AluJb SINE Alu -13 299 1 2067 93 0 4 chr1 109841703 109841973 -132822380 - AluSx SINE Alu -10 302 34 193 293 193 14 chr1 109842125 109842265 -132822088 + L2 LINE L2 2796 2960 -354 213 203 219 0 chr1 109842428 109842492 -132821861 + L2 LINE L2 3230 3307 -6 383 293 150 14 chr1 109842724 109842871 -132821482 - L3 LINE CR1 -34 1543 1377 263 273 87 118 chr1 109842989 109843150 -132821203 + L2 LINE L2 3115 3270 -2 231 286 173 0 chr1 109843243 109843376 -132820977 - L2 LINE L2 -1002 2312 2157 180 0 0 0 chr1 109843430 109843450 -132820903 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 333 0 0 0 chr1 109843668 109843705 -132820648 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 23 54 0 0 chr1 109844222 109844259 -132820094 + AT_rich Low_complexity Low_complexity 1 37 0 953 155 0 2 chr1 109844313 109844544 -132819809 + AluJo SINE Alu 7 287 -25 24 32 0 0 chr1 109844551 109844582 -132819771 + AT_rich Low_complexity Low_complexity 1 31 0 234 204 375 0 chr1 109844582 109844670 -132819683 - L2 LINE L2 -1177 2137 2017 35 54 0 0 chr1 109845120 109845176 -132819177 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr1 109845411 109845434 -132818919 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 109846344 109846366 -132817987 + AT_rich Low_complexity Low_complexity 1 22 0 2552 50 0 0 chr1 109846414 109846711 -132817642 + AluY SINE Alu 1 297 -14 2434 83 0 3 chr1 109846723 109847023 -132817330 + AluSc SINE Alu 1 299 -10 2325 99 3 0 chr1 109847905 109848209 -132816144 - AluY SINE Alu -6 305 1 1637 195 7 4 chr1 109848569 109848870 -132815483 + AluJo SINE Alu 5 306 0 230 216 20 0 chr1 109849365 109849416 -132814937 + (TA)n Simple_repeat Simple_repeat 1 52 0 206 149 21 0 chr1 109849436 109849467 -132814886 + (TA)n Simple_repeat Simple_repeat 1 35 -13 1689 192 0 11 chr1 109849467 109849754 -132814599 - AluJo SINE Alu -26 286 3 206 149 21 0 chr1 109849754 109849769 -132814584 + (TA)n Simple_repeat Simple_repeat 35 48 0 606 179 34 17 chr1 109849769 109849886 -132814467 - FLAM_A SINE Alu -11 122 4 696 214 243 0 chr1 109850017 109850223 -132814130 - MIR SINE MIR -1 261 6 361 303 74 22 chr1 109850234 109850566 -132813787 - L1MC/D LINE L1 -468 5653 5411 1210 84 0 7 chr1 109850850 109851005 -132813348 - AluSg/x SINE Alu -77 235 82 2171 83 7 0 chr1 109851070 109851347 -132813006 + AluY SINE Alu 1 279 -32 486 0 0 0 chr1 109851349 109851403 -132812950 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 29 78 0 0 chr1 109851470 109851534 -132812819 + AT_rich Low_complexity Low_complexity 1 64 0 1811 158 18 3 chr1 109852389 109852673 -132811680 - AluJb SINE Alu -20 292 5 878 174 43 0 chr1 109852908 109853092 -132811261 + MER3 DNA MER1_type 18 209 0 270 204 0 0 chr1 109853049 109853103 -132811250 - MER3 DNA MER1_type -119 90 37 * 419 271 99 9 chr1 109853827 109854012 -132810341 + MIR SINE MIR 42 246 -16 459 271 93 110 chr1 109854136 109854490 -132809863 - L2 LINE L2 -12 3260 2913 263 272 12 0 chr1 109854622 109854703 -132809650 + MER113 DNA MER1_type? 3 84 -437 2230 106 7 10 chr1 109854837 109855139 -132809214 + AluSg SINE Alu 1 301 -9 24 32 0 0 chr1 109855251 109855282 -132809071 + AT_rich Low_complexity Low_complexity 1 31 0 609 169 68 34 chr1 109855282 109855400 -132808953 + FLAM_C SINE Alu 1 122 -21 24 0 0 0 chr1 109855400 109855424 -132808929 + AT_rich Low_complexity Low_complexity 1 24 0 195 42 0 0 chr1 109856082 109856106 -132808247 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 9827 195 74 36 chr1 109856327 109858031 -132806322 + L1MA4A LINE L1 785 2423 -4582 1474 167 3 94 chr1 109858031 109858372 -132805981 + AluJb SINE Alu 1 310 -2 9827 195 74 36 chr1 109858372 109858509 -132805844 + L1MA4A LINE L1 2423 2553 -4452 1545 172 26 4 chr1 109858509 109858782 -132805571 + AluJb SINE Alu 21 299 -13 9827 195 74 36 chr1 109858782 109859643 -132804710 + L1MA4A LINE L1 2553 3380 -3625 2421 106 0 0 chr1 109859643 109859954 -132804399 - AluSq SINE Alu -2 311 1 9827 195 74 36 chr1 109859954 109860174 -132804179 + L1MA4A LINE L1 3380 3590 -3415 1678 186 17 0 chr1 109860174 109860475 -132803878 + AluJo SINE Alu 1 306 -6 9827 195 74 36 chr1 109860475 109862343 -132802010 + L1MA4A LINE L1 3590 5861 -1144 749 123 0 0 chr1 109862343 109862449 -132801904 + U6 snRNA snRNA 1 106 -1 9827 195 74 36 chr1 109862449 109863635 -132800718 + L1MA4A LINE L1 5861 7000 -5 189 372 0 26 chr1 109863859 109863937 -132800416 + MIR3 SINE MIR 86 161 -47 246 260 14 0 chr1 109864033 109864106 -132800247 + (TA)n Simple_repeat Simple_repeat 2 75 0 284 191 0 29 chr1 109864261 109864329 -132800024 - MLT1L LTR MaLR -4 611 546 507 202 0 10 chr1 109864402 109864501 -132799852 + Tigger1 DNA MER2_type 2 99 -2319 1529 199 20 33 chr1 109864629 109864935 -132799418 + AluJo SINE Alu 1 302 -10 201 39 0 0 chr1 109865502 109865528 -132798825 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 432 51 0 0 chr1 109865629 109865688 -132798665 + (TA)n Simple_repeat Simple_repeat 2 60 0 718 164 0 9 chr1 109866368 109866484 -132797869 - FLAM_A SINE Alu -16 126 12 22 0 0 0 chr1 109866490 109866512 -132797841 + AT_rich Low_complexity Low_complexity 1 22 0 566 284 51 13 chr1 109866526 109866955 -132797398 - L1ME LINE L1 -664 5502 5055 557 284 160 59 chr1 109867144 109867601 -132796752 + L2 LINE L2 2013 2515 -799 3438 146 35 99 chr1 109867612 109867634 -132796719 + L1MB4 LINE L1 5350 5372 -808 2200 123 0 0 chr1 109867634 109868005 -132796348 + AluSx SINE Alu 1 312 0 3438 146 35 99 chr1 109868005 109868861 -132795492 + L1MB4 LINE L1 5372 6172 -8 305 205 26 0 chr1 109868882 109868960 -132795393 + L1MB8 LINE L1 6093 6172 -6 780 282 13 49 chr1 109869709 109870014 -132794339 + L1ME1 LINE L1 34 327 -6213 694 230 88 42 chr1 109870208 109870491 -132793862 + L1ME1 LINE L1 940 1243 -5300 385 152 51 0 chr1 109870482 109870561 -132793792 - L1MD3 LINE L1 -21 7974 7892 * 1096 242 25 18 chr1 109870614 109871006 -132793347 + L1ME1 LINE L1 2630 3024 -3516 2213 108 0 0 chr1 109871040 109871327 -132793026 + AluSc SINE Alu 1 287 -22 835 209 15 62 chr1 109871439 109871643 -132792710 + L1ME1 LINE L1 4973 5162 -1378 2308 81 3 3 chr1 109871643 109871940 -132792413 + AluSg SINE Alu 1 297 -13 835 209 15 62 chr1 109871940 109872008 -132792345 + L1ME1 LINE L1 5162 5232 -1308 1750 167 20 16 chr1 109872008 109872360 -132791993 - MLT1A1 LTR MaLR 0 365 15 1069 212 66 55 chr1 109872391 109872492 -132791861 + L1ME1 LINE L1 5228 5326 -1234 2215 110 7 0 chr1 109872492 109872793 -132791560 - AluSc SINE Alu -6 303 1 1069 212 66 55 chr1 109872793 109873030 -132791323 + L1ME1 LINE L1 5326 5559 -1001 1802 173 30 0 chr1 109873030 109873325 -132791028 + AluJb SINE Alu 1 304 -8 1069 212 66 55 chr1 109873325 109873503 -132790850 + L1ME1 LINE L1 5559 5734 -826 2123 127 0 0 chr1 109873503 109873816 -132790537 + AluSq SINE Alu 1 313 0 1069 212 66 55 chr1 109873816 109874046 -132790307 + L1ME1 LINE L1 5734 5984 -576 1613 150 32 4 chr1 109874057 109874310 -132790043 + AluJo SINE Alu 32 291 -21 408 176 0 59 chr1 109874316 109874469 -132789884 + G-rich Low_complexity Low_complexity 5 148 0 1421 242 45 80 chr1 109874506 109875110 -132789243 + L1ME1 LINE L1 5993 6578 0 407 320 28 39 chr1 109875800 109875981 -132788372 - MIR3 SINE MIR -5 203 25 1679 177 7 7 chr1 109876199 109876516 -132787837 + AluJb SINE Alu 1 317 0 1698 149 0 4 chr1 109876666 109876921 -132787432 + AluJb SINE Alu 46 299 -13 5266 154 16 3 chr1 109877031 109878796 -132785557 + L1PB1 LINE L1 4168 5956 -195 22 0 0 0 chr1 109878899 109878921 -132785432 + AT_rich Low_complexity Low_complexity 1 22 0 805 146 52 109 chr1 109878962 109879165 -132785188 - L1MA4 LINE L1 -5 6295 6109 2224 80 10 3 chr1 109879165 109879454 -132784899 + AluSg SINE Alu 1 291 -19 805 146 52 109 chr1 109879454 109879517 -132784836 - L1MA4 LINE L1 -191 6109 6044 270 0 0 0 chr1 109879519 109879549 -132784804 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2210 67 3 3 chr1 109879673 109879958 -132784395 - AluSg SINE Alu -25 285 1 238 170 0 0 chr1 109879959 109880012 -132784341 - L1MA4 LINE L1 -249 6051 5999 210 37 0 0 chr1 109880021 109880048 -132784305 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 109880718 109880748 -132783605 + AT_rich Low_complexity Low_complexity 1 30 0 2231 97 17 3 chr1 109880916 109881216 -132783137 + AluSx SINE Alu 1 304 -8 2191 131 0 3 chr1 109881436 109881749 -132782604 + AluSx SINE Alu 1 312 0 23 33 0 0 chr1 109883098 109883128 -132781225 + AT_rich Low_complexity Low_complexity 1 30 0 1824 111 4 4 chr1 109883173 109883425 -132780928 - AluSx SINE Alu -30 282 31 250 241 0 0 chr1 109883569 109883623 -132780730 - MIR SINE MIR -5 257 204 602 207 7 14 chr1 109883776 109883916 -132780437 + MLT1D LTR MaLR 365 503 -2 623 152 0 0 chr1 109883983 109884082 -132780271 - U6 snRNA snRNA -8 99 1 24 0 0 0 chr1 109884148 109884172 -132780181 + AT_rich Low_complexity Low_complexity 1 24 0 252 241 0 0 chr1 109884192 109884246 -132780107 + L2 LINE L2 3251 3304 -9 1638 159 29 29 chr1 109884469 109884777 -132779576 - AluJo SINE Alu -4 308 1 1319 151 47 30 chr1 109885182 109885414 -132778939 + AluJo SINE Alu 1 236 -76 279 133 0 0 chr1 109885428 109885473 -132778880 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 2078 88 0 62 chr1 109885473 109885779 -132778574 - AluSq SINE Alu -26 287 1 265 196 0 0 chr1 109885780 109885831 -132778522 + AluJo SINE Alu 243 293 -9 2846 156 19 16 chr1 109886027 109886540 -132777813 - L1PA15 LINE L1 0 6165 5651 22 0 0 0 chr1 109886767 109886789 -132777564 + AT_rich Low_complexity Low_complexity 1 22 0 241 351 78 24 chr1 109886856 109886923 -132777430 + L2 LINE L2 2655 2717 -597 1762 172 0 25 chr1 109886923 109887237 -132777116 - AluJb SINE Alu -6 306 1 241 351 78 24 chr1 109887237 109887374 -132776979 + L2 LINE L2 2717 2870 -444 22 0 0 0 chr1 109887681 109887703 -132776650 + AT_rich Low_complexity Low_complexity 1 22 0 1855 149 17 0 chr1 109887774 109888070 -132776283 + AluJb SINE Alu 1 301 -11 456 282 115 57 chr1 109888157 109888366 -132775987 - MIR SINE MIR -18 244 24 666 182 0 0 chr1 109888401 109888511 -132775842 + FLAM_C SINE Alu 17 126 -17 535 261 120 11 chr1 109888558 109888742 -132775611 + MIR SINE MIR 10 213 -49 2392 90 0 0 chr1 109888981 109889280 -132775073 - AluSg SINE Alu -11 299 1 21 0 0 0 chr1 109889685 109889706 -132774647 + AT_rich Low_complexity Low_complexity 1 21 0 346 302 0 39 chr1 109890067 109890196 -132774157 + MIR SINE MIR 82 205 -57 2232 105 3 13 chr1 109890379 109890683 -132773670 + AluSx SINE Alu 1 301 -11 2349 86 6 10 chr1 109890814 109891127 -132773226 + AluSq SINE Alu 1 312 -1 2539 47 0 3 chr1 109891408 109891707 -132772646 + AluY SINE Alu 1 298 -13 24 0 0 0 chr1 109891771 109891795 -132772558 + AT_rich Low_complexity Low_complexity 1 24 0 203 313 78 75 chr1 109891795 109892076 -132772277 - L2 LINE L2 -520 2794 2513 413 301 90 73 chr1 109892767 109893238 -132771115 + L1M2 LINE L1 758 1375 -5474 2322 144 9 61 chr1 109894042 109894321 -132770032 + Tigger1 DNA MER2_type 4 251 -2167 2823 70 0 3 chr1 109894321 109894677 -132769676 + THE1A LTR MaLR 1 355 0 2322 144 9 61 chr1 109894677 109894849 -132769504 + Tigger1 DNA MER2_type 251 431 -1987 2930 101 77 70 chr1 109894849 109894944 -132769409 + LTR49 LTR ERV1 1 94 -501 1803 166 3 35 chr1 109894944 109895257 -132769096 + AluJo SINE Alu 1 303 -9 2930 101 77 70 chr1 109895257 109895661 -132768692 + LTR49 LTR ERV1 94 507 -88 1543 175 25 71 chr1 109895661 109895986 -132768367 - AluJb SINE Alu -2 310 1 2930 101 77 70 chr1 109895986 109896057 -132768296 + LTR49 LTR ERV1 507 576 -19 2479 70 0 10 chr1 109896255 109896569 -132767784 + AluSp SINE Alu 2 312 -1 367 148 246 8 chr1 109896571 109896693 -132767660 + MER53 DNA DNA 32 182 -7 * 473 133 71 0 chr1 109896611 109896709 -132767644 - MER53 DNA DNA -84 105 1 430 308 149 36 chr1 109897919 109898222 -132766131 + MLT1I LTR MaLR 15 352 -57 1884 119 63 92 chr1 109898222 109898428 -132765925 + LTR23 LTR ERV1 1 211 -226 396 0 0 0 chr1 109898428 109898472 -132765881 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1884 119 63 92 chr1 109898472 109898710 -132765643 + LTR23 LTR ERV1 211 432 -5 21 0 0 0 chr1 109899413 109899434 -132764919 + AT_rich Low_complexity Low_complexity 1 21 0 1690 168 10 39 chr1 109900079 109900389 -132763964 - L1MB4 LINE L1 -206 5974 5675 2116 133 0 0 chr1 109900389 109900709 -132763644 - AluSx SINE Alu 0 320 1 1690 168 10 39 chr1 109900709 109900784 -132763569 - L1MB4 LINE L1 -505 5675 5599 1118 198 0 18 chr1 109900785 109901002 -132763351 - AluJo SINE Alu -18 294 82 33 0 0 0 chr1 109901002 109901035 -132763318 + AT_rich Low_complexity Low_complexity 1 33 0 1336 157 118 16 chr1 109901049 109901304 -132763049 + AluJb SINE Alu 13 293 -19 786 179 0 0 chr1 109901327 109901444 -132762909 - FLAM_C SINE Alu -16 117 1 1779 187 0 0 chr1 109901489 109901783 -132762570 - AluJb SINE Alu -16 296 3 337 143 18 0 chr1 109901810 109901866 -132762487 - L1MB4 LINE L1 -571 5607 5551 21 0 0 0 chr1 109901867 109901888 -132762465 + AT_rich Low_complexity Low_complexity 1 21 0 684 212 0 0 chr1 109901888 109902006 -132762347 - FLAM_C SINE Alu -15 118 1 977 134 5 64 chr1 109902006 109902106 -132762247 + LTR39 LTR ERV1 421 506 -277 3928 46 6 31 chr1 109902106 109902235 -132762118 - L1PA4 LINE L1 -1 6154 6023 2838 10 0 0 chr1 109902235 109902545 -132761808 + AluYa5 SINE Alu 1 310 -1 3928 46 6 31 chr1 109902545 109902938 -132761415 - L1PA4 LINE L1 -132 6023 5645 977 134 5 64 chr1 109902938 109903024 -132761329 + LTR39 LTR ERV1 506 596 -187 1781 176 17 0 chr1 109903034 109903330 -132761023 + AluJb SINE Alu 1 301 -11 3706 60 87 10 chr1 109903402 109903920 -132760433 - LTR6B LTR ERV1 0 558 1 1721 169 44 49 chr1 109904268 109904317 -132760036 - MLT1A1 LTR MaLR 0 365 317 2228 129 0 3 chr1 109904317 109904627 -132759726 - AluSq SINE Alu -4 309 1 1721 169 44 49 chr1 109904627 109904944 -132759409 - MLT1A1 LTR MaLR -48 317 1 755 233 118 35 chr1 109905143 109905397 -132758956 - LTR48B LTR ERV1 0 644 412 1894 162 10 3 chr1 109905397 109905700 -132758653 + AluJb SINE Alu 1 305 -7 755 233 118 35 chr1 109905700 109905998 -132758355 - LTR48B LTR ERV1 -232 412 1 508 216 74 151 chr1 109906054 109906392 -132757961 + L1ME1 LINE L1 748 1059 -5350 518 224 98 10 chr1 109906397 109906602 -132757751 + L1ME1 LINE L1 1219 1441 -4965 2200 95 0 0 chr1 109906661 109906967 -132757386 + AluSg SINE Alu 1 306 0 244 216 0 0 chr1 109906972 109907023 -132757330 + L1ME1 LINE L1 4957 5007 -1399 459 169 0 0 chr1 109907023 109907100 -132757253 + AluS SINE Alu 1 77 -236 1953 212 38 14 chr1 109907101 109907125 -132757228 + L1ME1 LINE L1 5561 5583 -843 1588 191 3 7 chr1 109907125 109907444 -132756909 + AluJo SINE Alu 1 318 0 1953 212 38 14 chr1 109907444 109907969 -132756384 + L1ME1 LINE L1 5583 6229 -197 1755 130 27 0 chr1 109907969 109908231 -132756122 + AluSx SINE Alu 1 269 -43 1923 184 0 40 chr1 109908232 109908655 -132755698 - LTR27 LTR ERV1 -228 408 3 1043 225 98 101 chr1 109908655 109909278 -132755075 + MER31-int LTR ERV1 1183 1806 -3130 2334 100 3 3 chr1 109909278 109909589 -132754764 - AluSq SINE Alu -2 311 1 1043 225 98 101 chr1 109909589 109909646 -132754707 + MER31-int LTR ERV1 1806 1862 -3074 288 0 0 0 chr1 109909646 109909678 -132754675 + (TA)n Simple_repeat Simple_repeat 1 32 0 1882 130 34 34 chr1 109909679 109909865 -132754488 - L1PA16 LINE L1 -9 6157 5969 2357 99 3 0 chr1 109909865 109910169 -132754184 - AluSg SINE Alu -5 305 1 1882 130 34 34 chr1 109910169 109910335 -132754018 - L1PA16 LINE L1 -196 5970 5805 1043 225 98 101 chr1 109910335 109910930 -132753423 + MER31-int LTR ERV1 1861 2457 -2479 2028 122 3 7 chr1 109910931 109911226 -132753127 + AluSx SINE Alu 1 294 -18 499 148 87 54 chr1 109911393 109911542 -132752811 + MER31-int LTR ERV1 2715 2868 -2068 859 167 0 0 chr1 109911583 109911709 -132752644 - FLAM_C SINE Alu -17 126 1 1255 186 0 5 chr1 109911710 109911920 -132752433 - AluJo SINE Alu -20 292 84 3804 189 82 84 chr1 109911920 109912470 -132751883 + MER31-int LTR ERV1 2864 3414 -1522 1906 138 7 3 chr1 109912470 109912752 -132751601 + AluSx SINE Alu 1 283 -29 3804 189 82 84 chr1 109912752 109912870 -132751483 + MER31-int LTR ERV1 3414 3531 -1405 1719 173 27 3 chr1 109912870 109913165 -132751188 - AluJb SINE Alu -10 302 1 3804 189 82 84 chr1 109913165 109913475 -132750878 + MER31-int LTR ERV1 3531 3840 -1096 2116 118 21 0 chr1 109913475 109913764 -132750589 + AluSg SINE Alu 1 295 -15 3804 189 82 84 chr1 109913764 109914077 -132750276 + MER31-int LTR ERV1 3840 4154 -782 357 145 0 0 chr1 109914081 109914143 -132750210 - MER34C LTR ERV1 -489 96 35 680 227 168 63 chr1 109914456 109914992 -132749361 + LTR48B LTR ERV1 1 634 -10 1967 168 0 31 chr1 109915226 109915548 -132748805 + AluJo SINE Alu 1 312 0 649 71 12 0 chr1 109915619 109915703 -132748650 - AluSp/q SINE Alu -25 288 204 2580 182 43 56 chr1 109915995 109916639 -132747714 - LTR27 LTR ERV1 0 636 1 758 207 121 6 chr1 109917015 109917189 -132747164 - MER20 DNA MER1_type 0 219 26 1667 186 11 0 chr1 109917213 109917492 -132746861 - AluJo SINE Alu -30 282 1 303 326 22 0 chr1 109917957 109918049 -132746304 - MER5B DNA MER1_type 0 178 85 1922 148 0 3 chr1 109918568 109918879 -132745474 - AluSx SINE Alu 0 310 1 1249 240 58 53 chr1 109918999 109919583 -132744770 - HAL1 LINE L1 -120 2387 1801 601 204 77 31 chr1 109919588 109919784 -132744569 - HAL1 LINE L1 -1366 1141 937 2188 68 50 0 chr1 109919808 109920089 -132744264 + AluY SINE Alu 1 295 -16 2363 72 0 0 chr1 109920091 109920384 -132743969 + AluY SINE Alu 1 293 -18 901 215 16 20 chr1 109920386 109920637 -132743716 - L1MB8 LINE L1 -9 6169 5920 524 229 84 60 chr1 109920628 109920912 -132743441 + L1MC4 LINE L1 7506 7796 -246 * 353 319 39 18 chr1 109921016 109921301 -132743052 - L1ME LINE L1 -4985 1085 795 772 136 0 0 chr1 109921307 109921417 -132742936 - FLAM_C SINE Alu -23 120 11 810 101 7 65 chr1 109921621 109921760 -132742593 + FLAM_C SINE Alu 1 131 -2 323 239 18 26 chr1 109921833 109921946 -132742407 + L1ME3A LINE L1 5761 5872 -298 1436 213 58 28 chr1 109922851 109923250 -132741103 - MER110 LTR ERV1 -16 475 65 1978 170 3 0 chr1 109923711 109924011 -132740342 - AluSx SINE Alu -11 301 1 1499 180 19 4 chr1 109924011 109924267 -132740086 - AluJb SINE Alu -10 302 43 1941 157 0 7 chr1 109924300 109924600 -132739753 - AluJo SINE Alu -14 298 1 681 177 7 71 chr1 109924843 109924984 -132739369 + FLAM_A SINE Alu 1 132 -1 1817 164 7 3 chr1 109925405 109925692 -132738661 + AluJo SINE Alu 1 288 -24 193 213 115 33 chr1 109926996 109927057 -132737296 + L2 LINE L2 3244 3309 -4 635 116 16 78 chr1 109927704 109927833 -132736520 + AluJo SINE Alu 17 137 -175 1201 216 48 34 chr1 109927835 109928127 -132736226 + AluJb SINE Alu 5 300 -2 38 0 0 0 chr1 109928619 109928657 -132735696 + AT_rich Low_complexity Low_complexity 1 38 0 507 159 8 136 chr1 109928868 109929000 -132735353 + AluJb SINE Alu 37 151 -161 22 0 0 0 chr1 109930913 109930935 -132733418 + AT_rich Low_complexity Low_complexity 1 22 0 469 267 87 12 chr1 109931983 109932144 -132732209 - MIR SINE MIR 0 262 90 704 177 8 0 chr1 109932543 109932673 -132731680 + MLT1C LTR MaLR 1 131 -336 * 762 189 92 79 chr1 109932671 109932898 -132731455 + MLT1C LTR MaLR 234 463 -4 1124 232 127 5 chr1 109933291 109933662 -132730691 + L1MC4 LINE L1 6493 6908 -1134 2634 246 57 9 chr1 109933662 109934415 -132729938 + L1MEc LINE L1 36 824 -5572 854 137 0 22 chr1 109934418 109934557 -132729796 + FLAM_C SINE Alu 1 136 -7 524 194 182 12 chr1 109934558 109934800 -132729553 + L1MEc LINE L1 816 1098 -5298 2019 241 85 18 chr1 109934841 109935679 -132728674 + L1MEc LINE L1 1565 2458 -3938 26 64 0 0 chr1 109936966 109937013 -132727340 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr1 109937063 109937088 -132727265 + AT_rich Low_complexity Low_complexity 1 25 0 231 36 0 0 chr1 109937238 109937266 -132727087 + (TG)n Simple_repeat Simple_repeat 2 29 0 1075 179 0 43 chr1 109937266 109937473 -132726880 - AluJo SINE Alu -27 285 88 1856 154 3 11 chr1 109937957 109938243 -132726110 - AluJo SINE Alu -26 286 3 180 0 0 0 chr1 109938895 109938915 -132725438 + (TTTTC)n Simple_repeat Simple_repeat 1 20 0 470 186 144 0 chr1 109938927 109939024 -132725329 - AluJ SINE Alu -201 111 1 1066 142 36 71 chr1 109939639 109939806 -132724547 + MER33 DNA MER1_type 53 208 -2377 1694 188 10 3 chr1 109939806 109940099 -132724254 - AluJb SINE Alu -17 295 1 1066 142 36 71 chr1 109940099 109940212 -132724141 + MER33 DNA MER1_type 208 323 -1 823 143 0 60 chr1 109941112 109941245 -132723108 - FLAM_C SINE Alu -16 127 3 1887 163 3 10 chr1 109941297 109941592 -132722761 + AluSx SINE Alu 1 293 -19 260 218 0 0 chr1 109941646 109941701 -132722652 + L1PB4 LINE L1 6024 6078 -78 45 62 0 0 chr1 109942345 109942425 -132721928 + AT_rich Low_complexity Low_complexity 1 80 0 508 318 67 12 chr1 109942493 109942730 -132721623 + L1ME3A LINE L1 5595 5858 -312 1287 145 56 0 chr1 109942730 109942944 -132721409 + L1PB4 LINE L1 5930 6155 -1 508 318 67 12 chr1 109942944 109943049 -132721304 + L1ME3A LINE L1 5858 5956 -214 1256 250 44 95 chr1 109943182 109944483 -132719870 + L1MDb LINE L1 39 1229 -5314 2804 185 26 35 chr1 109944495 109945768 -132718585 + L1MB4 LINE L1 4618 5839 -344 4323 170 35 7 chr1 109945780 109946664 -132717689 + L1MB2 LINE L1 5254 6162 -9 309 194 0 0 chr1 109946670 109946737 -132717616 + L1MB4 LINE L1 5811 5877 -307 1602 114 60 60 chr1 109946768 109947084 -132717269 + L1MB4 LINE L1 5865 6180 0 216 0 0 0 chr1 109947095 109947119 -132717234 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1570 183 7 23 chr1 109947163 109947464 -132716889 + AluJo SINE Alu 5 300 -12 662 154 0 0 chr1 109947465 109947588 -132716765 + L1MD2 LINE L1 5317 5439 -920 1253 131 15 15 chr1 109947589 109947629 -132716724 + AluSg/x SINE Alu 85 124 -188 342 0 0 0 chr1 109947629 109947667 -132716686 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1253 131 15 15 chr1 109947667 109947825 -132716528 + AluSg/x SINE Alu 123 283 -29 3266 180 50 28 chr1 109947868 109948710 -132715643 + L1MD2 LINE L1 5456 6349 -10 487 281 167 9 chr1 109948943 109949035 -132715318 + MIR SINE MIR 19 95 -167 7105 36 33 0 chr1 109949035 109949902 -132714451 + L1PA5 LINE L1 5258 6153 -1 487 281 167 9 chr1 109949902 109950019 -132714334 + MIR SINE MIR 95 261 -1 205 368 15 0 chr1 109950095 109950163 -132714190 + L2 LINE L2 3154 3222 -50 22 35 0 0 chr1 109950881 109950910 -132713443 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr1 109951000 109951041 -132713312 + AT_rich Low_complexity Low_complexity 1 41 0 763 172 8 15 chr1 109951640 109951774 -132712579 - FLAM_A SINE Alu 0 133 1 378 281 206 0 chr1 109952557 109952703 -132711650 + MIR3 SINE MIR 19 194 -14 2187 132 7 0 chr1 109952810 109953120 -132711233 + AluSx SINE Alu 1 312 0 2385 87 0 0 chr1 109953120 109953429 -132710924 + AluY SINE Alu 1 309 -2 513 115 0 0 chr1 109953455 109953533 -132710820 + (GA)n Simple_repeat Simple_repeat 1 78 0 270 362 60 17 chr1 109953657 109953773 -132710580 + MIR3 SINE MIR 3 123 -85 636 145 103 0 chr1 109953958 109954075 -132710278 - FLAM_C SINE Alu -4 129 1 492 296 126 14 chr1 109954295 109954518 -132709835 + MLT1J2 LTR MaLR 202 449 -1 579 179 87 138 chr1 109954561 109954698 -132709655 - MER58C DNA MER1_type -2207 213 87 2467 62 0 0 chr1 109954698 109954990 -132709363 + AluY SINE Alu 5 296 -15 579 179 87 138 chr1 109954990 109955048 -132709305 - MER58C DNA MER1_type -2333 87 28 306 301 249 5 chr1 109955143 109955352 -132709001 - MIR SINE MIR -1 261 2 565 214 19 102 chr1 109955646 109955852 -132708501 - MER5A DNA MER1_type 0 189 1 2233 95 0 19 chr1 109955925 109956241 -132708112 + AluSg SINE Alu 1 310 0 218 347 13 0 chr1 109956425 109956500 -132707853 + MIR3 SINE MIR 128 203 -5 1768 182 0 3 chr1 109957051 109957347 -132707006 - AluJb SINE Alu -17 295 1 25 0 0 0 chr1 109957413 109957438 -132706915 + AT_rich Low_complexity Low_complexity 1 25 0 1809 91 0 4 chr1 109957755 109957986 -132706367 + AluSq SINE Alu 66 295 -18 279 322 62 40 chr1 109958076 109958253 -132706100 + L2 LINE L2 3128 3308 -5 1967 125 7 21 chr1 109958835 109959124 -132705229 - AluJo SINE Alu -15 297 13 258 246 15 0 chr1 109959244 109959309 -132705044 + Charlie7 DNA MER1_type 35 100 -2512 24 0 0 0 chr1 109962371 109962395 -132701958 + AT_rich Low_complexity Low_complexity 1 24 0 193 255 0 39 chr1 109962584 109962635 -132701718 - L2 LINE L2 -86 3186 3138 26 0 0 0 chr1 109963419 109963445 -132700908 + AT_rich Low_complexity Low_complexity 1 26 0 869 161 25 25 chr1 109963445 109963606 -132700747 - FRAM SINE Alu -16 160 1 461 287 201 14 chr1 109963833 109964042 -132700311 - MIR SINE MIR -8 254 7 693 312 27 0 chr1 109964631 109964852 -132699501 - MIR SINE MIR -10 252 26 189 363 133 7 chr1 109966023 109966158 -132698195 + MER5A DNA MER1_type 1 152 -37 368 292 257 5 chr1 109966426 109966538 -132697815 - MIR SINE MIR 0 262 180 1811 154 0 30 chr1 109966538 109966843 -132697510 - AluJo SINE Alu -16 296 1 368 292 257 5 chr1 109966843 109966932 -132697421 - MIR SINE MIR -82 180 10 294 250 125 0 chr1 109966933 109967053 -132697300 + L1ME4a LINE L1 5474 5608 -513 3757 103 19 8 chr1 109967066 109967580 -132696773 - MER1A DNA MER1_type -8 521 2 422 303 222 11 chr1 109967641 109967826 -132696527 - MIR SINE MIR -19 243 20 374 248 99 25 chr1 109967850 109968011 -132696342 + L1ME4a LINE L1 5653 5825 -296 238 239 28 0 chr1 109968011 109968082 -132696271 + L1MC4 LINE L1 7850 7922 -120 225 216 20 0 chr1 109968082 109968133 -132696220 + (TATG)n Simple_repeat Simple_repeat 3 54 0 278 130 94 5 chr1 109968185 109968241 -132696112 - MER5A DNA MER1_type -128 61 4 650 328 75 9 chr1 109969388 109969720 -132694633 - L1ME3A LINE L1 -198 5972 5619 254 279 25 0 chr1 109970643 109970722 -132693631 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 1673 185 6 19 chr1 109970873 109971187 -132693166 - AluJb SINE Alu -2 310 1 249 135 95 14 chr1 109971243 109971317 -132693036 + (TATAA)n Simple_repeat Simple_repeat 1 80 0 2039 112 11 0 chr1 109973419 109973731 -132690622 - AluSp SINE Alu 0 317 3 31 0 0 0 chr1 109974584 109974615 -132689738 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr1 109974656 109974685 -132689668 + AT_rich Low_complexity Low_complexity 1 29 0 1128 110 0 0 chr1 109974685 109974831 -132689522 - AluSc SINE Alu -21 288 143 21 0 0 0 chr1 109974975 109974996 -132689357 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1 109975545 109975572 -132688781 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr1 109976585 109976607 -132687746 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr1 109976819 109976854 -132687499 + AT_rich Low_complexity Low_complexity 1 35 0 2192 117 0 0 chr1 109976863 109977161 -132687192 + AluSx SINE Alu 1 298 -14 30 0 0 24 chr1 109978670 109978694 -132685659 + AT_rich Low_complexity Low_complexity 1 25 -15 546 70 0 0 chr1 109978694 109978765 -132685588 - L1PA5 LINE L1 -9 6145 6075 30 0 0 24 chr1 109978765 109978781 -132685572 + AT_rich Low_complexity Low_complexity 25 40 0 241 83 0 28 chr1 109979188 109979224 -132685129 + tRNA-Val-GTG tRNA tRNA 3 37 -39 2251 119 3 0 chr1 109979303 109979605 -132684748 + AluSp SINE Alu 2 304 -9 393 284 80 13 chr1 109980083 109980209 -132684144 + L1ME LINE L1 5293 5434 -747 2435 81 0 0 chr1 109980209 109980504 -132683849 + AluSc SINE Alu 1 295 -14 393 284 80 13 chr1 109980504 109980563 -132683790 + L1ME LINE L1 5434 5488 -693 232 259 130 19 chr1 109980568 109980676 -132683677 + L1ME LINE L1 5533 5652 -469 365 252 131 9 chr1 109980746 109980853 -132683500 + L2 LINE L2 3153 3272 0 41 72 0 0 chr1 109981022 109981105 -132683248 + AT_rich Low_complexity Low_complexity 1 83 0 436 191 143 9 chr1 109983085 109983190 -132681163 + FLAM_C SINE Alu 1 119 -24 566 263 103 22 chr1 109983338 109983570 -132680783 - MIR SINE MIR -10 252 2 1769 180 3 3 chr1 109983906 109984206 -132680147 + AluJb SINE Alu 1 300 -12 900 183 6 24 chr1 109984238 109984402 -132679951 - AluJo/FRAM SINE Alu -21 291 131 2229 109 0 0 chr1 109984405 109984699 -132679654 - AluSx SINE Alu -15 297 4 813 191 138 0 chr1 109984889 109985077 -132679276 + L1M4b LINE L1 11 224 -6635 1415 284 38 59 chr1 109985077 109985208 -132679145 - L1M4b LINE L1 -6342 517 385 1734 117 110 11 chr1 109985208 109985490 -132678863 + AluSg SINE Alu 1 310 0 1415 284 38 59 chr1 109985490 109985883 -132678470 - L1M4b LINE L1 -6474 385 4 2473 90 0 0 chr1 109985913 109986224 -132678129 + AluSp SINE Alu 1 311 -2 803 307 129 9 chr1 109986362 109986818 -132677535 + MLT1J LTR MaLR 1 511 0 734 175 0 29 chr1 109986921 109987058 -132677295 - FLAM_A SINE Alu 0 133 1 502 200 11 11 chr1 109987786 109987881 -132676472 - Tigger7 DNA MER2_type -1 2486 2392 1439 212 15 0 chr1 109987899 109988158 -132676195 - Tigger7 DNA MER2_type -287 263 1 251 292 99 61 chr1 109988760 109988904 -132675449 + MIR SINE MIR 16 160 -67 843 160 0 8 chr1 109989106 109989231 -132675122 + AluJo/FLAM SINE Alu 4 127 -185 409 92 62 0 chr1 109989231 109989296 -132675057 + Alu SINE Alu 234 302 -10 1889 71 17 4 chr1 109989296 109989535 -132674818 + AluY SINE Alu 1 242 -69 183 268 18 36 chr1 109989575 109989631 -132674722 + L2 LINE L2 3216 3270 -2 290 221 15 0 chr1 109989739 109989807 -132674546 - MER116 DNA Mariner 0 80 12 2137 115 17 0 chr1 109989807 109990094 -132674259 + AluSg SINE Alu 1 292 -18 2216 112 147 5 chr1 109990167 109990541 -132673812 + MSTA LTR MaLR 2 428 0 766 257 45 5 chr1 109992129 109992331 -132672022 + MER63A DNA MER1_type 1 210 0 31 0 0 0 chr1 109992759 109992790 -132671563 + AT_rich Low_complexity Low_complexity 1 31 0 695 238 75 23 chr1 109992938 109993203 -132671150 + L1ME4a LINE L1 5562 5840 -281 1938 127 28 0 chr1 109993203 109993486 -132670867 + AluSx SINE Alu 1 291 -21 721 173 81 32 chr1 109994109 109994392 -132669961 - Charlie7 DNA MER1_type -76 2536 2240 600 171 277 50 chr1 109994395 109994458 -132669895 - Charlie7 DNA MER1_type -748 1864 1817 773 240 82 5 chr1 109994458 109994666 -132669687 + MER58A DNA MER1_type 1 224 0 600 171 277 50 chr1 109994666 109994923 -132669430 - Charlie7 DNA MER1_type -795 1817 1471 479 281 146 16 chr1 109994919 109995111 -132669242 - Charlie7 DNA MER1_type -2256 356 140 * 209 56 0 56 chr1 109995179 109995215 -132669138 + (CCCCCT)n Simple_repeat Simple_repeat 3 36 0 11173 55 4 26 chr1 109995219 109996657 -132667696 + SVA Other Other 2 1386 0 666 118 0 0 chr1 109996662 109996764 -132667589 + (GGGA)n Simple_repeat Simple_repeat 3 104 0 25 51 0 0 chr1 109997141 109997180 -132667173 + AT_rich Low_complexity Low_complexity 1 39 0 2260 111 0 0 chr1 109997241 109997538 -132666815 - AluSx SINE Alu -15 297 1 2294 105 0 0 chr1 109997834 109998138 -132666215 - AluSx SINE Alu -8 304 1 2481 50 0 7 chr1 109998278 109998575 -132665778 - AluY SINE Alu -16 295 1 2252 112 0 13 chr1 109998835 109999148 -132665205 - AluSq SINE Alu -4 309 1 1769 172 3 7 chr1 109999149 109999445 -132664908 - AluJo SINE Alu -13 299 5 205 291 0 18 chr1 109999577 109999632 -132664721 - L2 LINE L2 -212 3060 3007 321 277 138 47 chr1 110000005 110000258 -132664095 - L2 LINE L2 -832 2482 2207 1791 177 3 19 chr1 110000380 110000697 -132663656 + AluJo SINE Alu 1 312 0 254 235 141 12 chr1 110000701 110000786 -132663567 - MIR SINE MIR -133 129 34 1391 209 114 80 chr1 110003893 110004731 -132659622 - L2 LINE L2 -19 3294 2428 403 113 28 0 chr1 110004731 110004802 -132659551 - Charlie5 DNA MER1_type 0 2623 2551 1300 122 11 0 chr1 110004809 110004997 -132659356 + AluSg/x SINE Alu 121 310 0 304 161 99 0 chr1 110005002 110005083 -132659270 - Charlie5 DNA MER1_type -108 2504 2416 669 150 83 8 chr1 110005088 110005221 -132659132 - AluJb SINE Alu -10 302 160 344 206 135 32 chr1 110005223 110005349 -132659004 - MER112 DNA MER1_type -121 139 1 616 200 173 38 chr1 110005397 110005582 -132658771 + MIR SINE MIR 45 254 -8 215 373 38 25 chr1 110006750 110006908 -132657445 + MIR SINE MIR 88 247 -15 3409 129 2 4 chr1 110007473 110007985 -132656368 + MER9 LTR ERVK 1 511 0 1022 277 74 56 chr1 110008090 110008206 -132656147 - MLT1J LTR MaLR 0 511 399 1953 126 0 30 chr1 110008206 110008507 -132655846 + AluSx SINE Alu 2 293 -19 1022 277 74 56 chr1 110008507 110008892 -132655461 - MLT1J LTR MaLR -112 399 1 22 0 0 0 chr1 110008902 110008924 -132655429 + AT_rich Low_complexity Low_complexity 1 22 0 553 205 211 7 chr1 110009485 110009654 -132654699 - MIR SINE MIR -2 260 58 555 232 54 9 chr1 110011240 110011352 -132653001 - L2 LINE L2 -7 3306 3190 5521 183 70 16 chr1 110011711 110011887 -132652466 - L1MB3 LINE L1 -165 6018 5853 1700 168 6 52 chr1 110011887 110012214 -132652139 - AluJb SINE Alu 0 312 1 5521 183 70 16 chr1 110012214 110012334 -132652019 - L1MB3 LINE L1 -330 5853 5741 2356 96 51 23 chr1 110012334 110012688 -132651665 - THE1B LTR MaLR 0 364 1 5521 183 70 16 chr1 110012688 110014064 -132650289 - L1MB3 LINE L1 -442 5741 4214 342 0 0 0 chr1 110014064 110014102 -132650251 + (TG)n Simple_repeat Simple_repeat 1 38 0 5521 183 70 16 chr1 110014102 110014441 -132649912 - L1MB3 LINE L1 -1969 4214 3895 2398 95 0 9 chr1 110014447 110014762 -132649591 - AluSx SINE Alu 0 312 1 332 308 87 0 chr1 110015084 110015188 -132649165 + L2 LINE L2 3180 3292 -21 2548 46 13 0 chr1 110015490 110015792 -132648561 - AluSp SINE Alu -7 306 1 5690 131 55 18 chr1 110016279 110017214 -132647139 + LTR5 LTR ERVK 1 969 0 1740 128 0 4 chr1 110017529 110017779 -132646574 - AluSx SINE Alu -13 299 51 23 68 0 0 chr1 110017834 110017878 -132646475 + AT_rich Low_complexity Low_complexity 1 44 0 219 36 0 0 chr1 110018513 110018541 -132645812 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 5475 152 33 25 chr1 110018541 110018887 -132645466 - L1PB1 LINE L1 -11 6140 5798 312 91 0 0 chr1 110018887 110018931 -132645422 + (TG)n Simple_repeat Simple_repeat 2 45 0 5475 152 33 25 chr1 110018931 110018952 -132645401 - L1PB1 LINE L1 -353 5798 5779 2399 90 3 0 chr1 110018952 110019253 -132645100 - AluSp SINE Alu -11 302 1 5475 152 33 25 chr1 110019253 110019272 -132645081 - L1PB1 LINE L1 -372 5779 5762 2363 98 0 13 chr1 110019272 110019451 -132644902 - AluSx SINE Alu 0 312 137 2557 55 0 0 chr1 110019451 110019760 -132644593 - AluY SINE Alu -2 309 1 2363 98 0 13 chr1 110019760 110019896 -132644457 - AluSx SINE Alu -175 137 1 5475 152 33 25 chr1 110019896 110021229 -132643124 - L1PB1 LINE L1 -389 5762 4442 234 0 0 0 chr1 110021229 110021255 -132643098 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5475 152 33 25 chr1 110021255 110021394 -132642959 - L1PB1 LINE L1 -1709 4442 4306 2023 151 0 19 chr1 110021394 110021712 -132642641 - AluSx SINE Alu 0 312 1 5475 152 33 25 chr1 110021712 110021841 -132642512 - L1PB1 LINE L1 -1845 4306 4130 1396 19 0 0 chr1 110022629 110022821 -132641532 - L1PA3 LINE L1 0 6155 5986 708 205 124 0 chr1 110023462 110023624 -132640729 + MER5A DNA MER1_type 4 188 -1 413 299 110 53 chr1 110025467 110025637 -132638716 + L2 LINE L2 1698 1857 -1457 1177 184 0 18 chr1 110025637 110025860 -132638493 - MER20 DNA MER1_type 0 219 1 413 299 110 53 chr1 110025860 110026044 -132638309 + L2 LINE L2 1857 2072 -1242 3570 127 11 35 chr1 110026161 110026295 -132638058 - LTR39 LTR ERV1 -169 614 478 2061 135 29 52 chr1 110026295 110026449 -132637904 + THE1C LTR MaLR 1 157 -218 1995 143 0 13 chr1 110026449 110026750 -132637603 - AluSp SINE Alu -16 297 1 2061 135 29 52 chr1 110026750 110026979 -132637374 + THE1C LTR MaLR 157 375 0 3570 127 11 35 chr1 110026979 110027473 -132636880 - LTR39 LTR ERV1 -305 478 1 1269 202 57 109 chr1 110027474 110027679 -132636674 + MER31-int LTR ERV1 2470 2684 -2252 2070 107 0 31 chr1 110027679 110028006 -132636347 - AluSc SINE Alu 0 318 1 1722 179 7 7 chr1 110028008 110028304 -132636049 - AluJo SINE Alu -12 300 5 1269 202 57 109 chr1 110028304 110028727 -132635626 + MER31-int LTR ERV1 2685 3069 -1867 193 329 61 0 chr1 110028862 110028944 -132635409 - MER5B DNA MER1_type 0 178 92 1889 151 3 3 chr1 110029307 110029605 -132634748 + AluJb SINE Alu 1 298 -14 2797 233 50 77 chr1 110029634 110030152 -132634201 + MER31-int LTR ERV1 3190 3721 -1215 2050 141 3 0 chr1 110030152 110030442 -132633911 - AluSx SINE Alu -18 294 4 2797 233 50 77 chr1 110030442 110031086 -132633267 + MER31-int LTR ERV1 3721 4320 -616 280 202 218 24 chr1 110031098 110031222 -132633131 + LTR37A LTR ERV1 61 208 -218 407 243 0 0 chr1 110031318 110031425 -132632928 + MER31-int LTR ERV1 4364 4470 -466 2303 96 6 3 chr1 110031571 110031883 -132632470 - AluSp SINE Alu 0 313 1 2016 229 30 39 chr1 110032334 110032893 -132631460 + MER92C LTR ERV1 1 554 0 242 167 19 0 chr1 110032902 110032956 -132631397 + MLT1E3 LTR MaLR 105 159 -465 678 200 0 0 chr1 110032990 110033146 -132631207 + FLAM_A SINE Alu 1 156 0 828 286 28 51 chr1 110033149 110033505 -132630848 + MLT1E3 LTR MaLR 153 500 -124 2592 130 99 21 chr1 110033624 110034013 -132630340 - LTR45 LTR ERV1 0 525 89 4313 70 48 3 chr1 110034013 110034595 -132629758 - LTR14B LTR ERVK 0 608 1 2592 130 99 21 chr1 110034595 110034690 -132629663 - LTR45 LTR ERV1 -436 89 3 359 180 16 11 chr1 110034760 110034843 -132629510 - AluJ/FLAM SINE Alu -242 60 1 391 151 40 79 chr1 110034843 110034969 -132629384 + MER31-int LTR ERV1 1472 1592 -3344 1324 174 9 0 chr1 110034969 110035193 -132629160 - AluJo SINE Alu -5 307 82 287 81 0 97 chr1 110035202 110035264 -132629089 + MER31-int LTR ERV1 1605 1660 -3276 * 349 152 73 126 chr1 110035233 110035384 -132628969 + LTR57-int LTR ERVL 1367 1509 -3834 701 212 99 76 chr1 110035402 110035756 -132628597 + MER31-int LTR ERV1 1686 2047 -2889 333 155 14 14 chr1 110035724 110035795 -132628558 + MER31-int LTR ERV1 1615 1685 -6435 * 1246 188 5 9 chr1 110035795 110036008 -132628345 + AluJb SINE Alu 91 302 -10 497 204 45 113 chr1 110036008 110036463 -132627890 + MER31-int LTR ERV1 2409 4184 -2102 2155 107 0 10 chr1 110036463 110036762 -132627591 - AluSx SINE Alu -7 305 10 31 0 0 0 chr1 110037622 110037653 -132626700 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr1 110037694 110037723 -132626630 + AT_rich Low_complexity Low_complexity 1 29 0 1141 103 0 0 chr1 110037723 110037869 -132626484 - AluSc SINE Alu -21 288 143 21 0 0 0 chr1 110038013 110038034 -132626319 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1 110038583 110038610 -132625743 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr1 110039623 110039645 -132624708 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr1 110039857 110039892 -132624461 + AT_rich Low_complexity Low_complexity 1 35 0 2254 111 0 0 chr1 110039901 110040199 -132624154 + AluSx SINE Alu 1 298 -14 29 0 0 25 chr1 110041711 110041735 -132622618 + AT_rich Low_complexity Low_complexity 1 25 -14 543 70 0 0 chr1 110041735 110041806 -132622547 - L1PA5 LINE L1 -9 6145 6075 29 0 0 25 chr1 110041806 110041821 -132622532 + AT_rich Low_complexity Low_complexity 25 39 0 228 83 0 28 chr1 110042228 110042264 -132622089 + tRNA-Val-GTG tRNA tRNA 3 37 -39 2261 123 3 0 chr1 110042343 110042645 -132621708 + AluSp SINE Alu 2 304 -9 1059 160 20 40 chr1 110043348 110043548 -132620805 - AluJb SINE Alu -30 282 87 1136 181 0 37 chr1 110043548 110043763 -132620590 - AluJb SINE Alu -105 207 1 990 267 111 56 chr1 110043764 110044102 -132620251 - L2 LINE L2 -768 2546 2165 1952 154 3 10 chr1 110044102 110044414 -132619939 + AluJb SINE Alu 1 310 -2 990 267 111 56 chr1 110044414 110044626 -132619727 - L2 LINE L2 -1149 2165 1966 496 252 36 7 chr1 110044660 110044799 -132619554 + MER5A DNA MER1_type 4 146 -43 653 263 50 0 chr1 110044920 110045099 -132619254 - MER5A DNA MER1_type -1 188 1 1897 125 31 7 chr1 110045239 110045527 -132618826 - AluSx SINE Alu -17 295 1 1832 178 3 0 chr1 110046315 110046608 -132617745 + AluJb SINE Alu 1 294 -18 222 118 0 0 chr1 110046793 110046827 -132617526 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 831 127 0 89 chr1 110046847 110047005 -132617348 + U4 snRNA snRNA 1 144 -1 2033 134 7 19 chr1 110047556 110047863 -132616490 + AluJo SINE Alu 1 303 -9 1459 163 62 29 chr1 110048161 110048437 -132615916 - AluJo SINE Alu -23 289 5 266 184 61 0 chr1 110048591 110048640 -132615713 - L2 LINE L2 0 3272 3221 797 154 8 0 chr1 110048701 110048818 -132615535 + FLAM_C SINE Alu 1 118 -15 25 31 0 0 chr1 110048818 110048850 -132615503 + AT_rich Low_complexity Low_complexity 1 32 0 293 379 38 25 chr1 110048912 110049152 -132615201 - L2 LINE L2 -160 3112 2870 919 148 7 20 chr1 110049433 110049582 -132614771 + AluJo SINE Alu 1 147 -165 1902 132 0 0 chr1 110049744 110050001 -132614352 - AluSc SINE Alu -52 257 1 304 276 35 76 chr1 110050006 110050151 -132614202 + L2 LINE L2 1984 2122 -1192 1779 176 3 3 chr1 110050798 110051093 -132613260 - AluJb SINE Alu -17 295 1 1322 211 87 36 chr1 110051185 110051541 -132612812 - MLT1A2 LTR MaLR 0 374 1 7556 52 5 8 chr1 110052180 110053686 -132610667 - SVA Other Other -839 1385 1 291 239 0 0 chr1 110053686 110053753 -132610600 + GA-rich Low_complexity Low_complexity 2 68 0 237 306 121 44 chr1 110054465 110054781 -132609572 - L2 LINE L2 -49 3264 2545 321 261 121 25 chr1 110054781 110054980 -132609373 + L1M4 LINE L1 2404 2621 -3525 763 269 94 44 chr1 110055078 110055161 -132609192 + Charlie2 DNA MER1_type 169 246 -2616 2402 103 0 0 chr1 110055161 110055473 -132608880 - AluSx SINE Alu 0 312 1 763 269 94 44 chr1 110055473 110055795 -132608558 + Charlie2 DNA MER1_type 246 594 -2268 1098 193 73 102 chr1 110055968 110056418 -132607935 + MER69 DNA AcHobo 2090 2526 0 560 53 13 0 chr1 110056459 110056535 -132607818 + (TTTTC)n Simple_repeat Simple_repeat 4 80 0 1573 201 13 16 chr1 110056541 110056854 -132607499 - AluJo SINE Alu 0 312 1 527 243 7 21 chr1 110056888 110057028 -132607325 + Charlie2b DNA MER1_type 1286 1423 -1359 1842 201 42 53 chr1 110057040 110057108 -132607245 + Charlie2b DNA MER1_type 1592 1659 -1203 1876 172 0 0 chr1 110057108 110057410 -132606943 - AluJb SINE Alu -10 302 1 1842 201 42 53 chr1 110057410 110057889 -132606464 + Charlie2b DNA MER1_type 1659 2133 -649 307 220 68 25 chr1 110057887 110058005 -132606348 + Charlie2b DNA MER1_type 2659 2781 -1 * 344 250 25 25 chr1 110059618 110059738 -132604615 - HAL1 LINE L1 -588 1919 1800 314 234 0 13 chr1 110060750 110060827 -132603526 - HAL1 LINE L1 -1137 1370 1295 392 265 73 75 chr1 110060827 110061131 -132603222 - HAL1 LINE L1 -1169 1338 1034 2278 99 0 7 chr1 110061131 110061435 -132602918 + AluSc SINE Alu 1 302 -7 392 265 73 75 chr1 110061435 110061567 -132602786 - HAL1 LINE L1 -1473 1034 903 326 244 23 0 chr1 110061641 110061727 -132602626 + MIR SINE MIR 97 184 -78 1972 272 81 3 chr1 110061731 110062309 -132602044 - L2 LINE L2 -339 2975 2353 737 218 30 15 chr1 110062342 110062539 -132601814 - L2 LINE L2 -1507 1807 1608 287 222 0 16 chr1 110062539 110062602 -132601751 - LTR33 LTR ERVL 0 521 460 581 203 8 25 chr1 110062602 110062720 -132601633 - AluSg/x SINE Alu -12 300 185 981 99 0 8 chr1 110062723 110062854 -132601499 - AluJb SINE Alu -182 130 1 2410 87 0 0 chr1 110062877 110063177 -132601176 - AluSc SINE Alu -8 301 2 908 230 181 71 chr1 110063177 110063598 -132600755 - LTR33 LTR ERVL -54 467 1 901 227 24 28 chr1 110063598 110063845 -132600508 - L2 LINE L2 -1702 1612 1367 2362 62 10 7 chr1 110063846 110064138 -132600215 - AluY SINE Alu -18 293 1 258 282 250 11 chr1 110065091 110065170 -132599183 + L2 LINE L2 2324 2383 -931 1997 138 34 86 chr1 110065170 110065555 -132598798 - MLT1A1 LTR MaLR 0 365 1 258 282 250 11 chr1 110065555 110065663 -132598690 + L2 LINE L2 2383 2556 -758 483 161 35 0 chr1 110065738 110065825 -132598528 + MER84 LTR ERVI 338 427 -80 507 277 15 0 chr1 110065875 110066012 -132598341 + L2 LINE L2 2731 2869 -445 444 314 141 6 chr1 110066071 110066227 -132598126 + L2 LINE L2 2863 3039 -274 1179 166 6 134 chr1 110066310 110066653 -132597700 + AluY SINE Alu 11 309 -2 884 163 0 0 chr1 110066807 110066936 -132597417 + FLAM_C SINE Alu 2 130 -3 2038 196 104 73 chr1 110068027 110068235 -132596118 + MLT1E LTR MaLR 1 201 -392 5328 82 14 46 chr1 110068235 110069016 -132595337 - L1MA1 LINE L1 0 6302 5547 2038 196 104 73 chr1 110069016 110069317 -132595036 + MLT1E LTR MaLR 201 532 -61 2770 152 17 7 chr1 110069317 110069731 -132594622 + MER47B DNA MER2_type 1 418 0 2038 196 104 73 chr1 110069731 110069795 -132594558 + MLT1E LTR MaLR 532 593 0 2021 143 21 47 chr1 110070699 110071084 -132593269 + THE1C LTR MaLR 1 375 0 503 355 71 40 chr1 110071998 110072597 -132591756 - L2 LINE L2 -236 3036 2420 248 371 20 41 chr1 110072614 110072811 -132591542 - L2 LINE L2 -1177 2137 1945 1172 303 93 43 chr1 110072811 110073412 -132590941 - L2 LINE L2 -882 2432 1802 301 149 0 0 chr1 110073416 110073463 -132590890 + MLT2D LTR ERVL 1 47 -367 270 0 0 0 chr1 110073468 110073498 -132590855 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1421 161 36 25 chr1 110073506 110073780 -132590573 - AluJb SINE Alu -35 277 1 633 231 48 108 chr1 110073782 110074033 -132590320 + MLT2D LTR ERVL 102 330 -84 2055 119 45 0 chr1 110074033 110074319 -132590034 - AluSx SINE Alu -13 299 1 633 231 48 108 chr1 110074319 110074400 -132589953 + MLT2D LTR ERVL 330 414 0 2901 215 58 74 chr1 110074400 110075519 -132588834 + MLT1A2-int LTR MaLR 1 1586 -149 381 60 0 0 chr1 110075519 110075569 -132588784 + L1PA13 LINE L1 6111 6160 -3 2901 215 58 74 chr1 110075569 110075651 -132588702 + MLT1A2-int LTR MaLR 1586 1668 -67 36771 100 15 12 chr1 110075662 110077678 -132586675 + L1PA7 LINE L1 11 2020 -4134 2051 82 110 4 chr1 110077678 110077959 -132586394 + AluY SINE Alu 1 311 0 36771 100 15 12 chr1 110077959 110080725 -132583628 + L1PA7 LINE L1 2020 4811 -1343 306 0 0 0 chr1 110080725 110080759 -132583594 + (TA)n Simple_repeat Simple_repeat 2 35 0 36771 100 15 12 chr1 110080759 110082107 -132582246 + L1PA7 LINE L1 4811 6154 0 310 158 73 85 chr1 110082105 110082150 -132582203 + MLT1A2-int LTR MaLR 1655 1700 -35 * 4311 186 20 52 chr1 110082150 110083151 -132581202 + LTR5 LTR ERVK 1 969 0 310 158 73 85 chr1 110083151 110083187 -132581166 + MLT1A2-int LTR MaLR 1700 1735 0 1595 206 29 55 chr1 110083187 110083571 -132580782 + MLT1A2 LTR MaLR 1 374 0 2368 105 0 6 chr1 110083594 110083908 -132580445 - AluSx SINE Alu 0 312 1 316 221 143 78 chr1 110083910 110084064 -132580289 - L2 LINE L2 -1514 1800 1637 247 306 139 0 chr1 110084086 110084158 -132580195 - L2 LINE L2 -47 3266 3185 295 250 121 9 chr1 110084783 110084899 -132579454 + HAL1b LINE L1 746 874 -474 242 136 0 51 chr1 110084900 110084953 -132579400 + (TTTTTA)n Simple_repeat Simple_repeat 5 55 0 688 66 110 0 chr1 110084953 110085044 -132579309 - HY3 scRNA scRNA 0 101 1 1717 168 42 0 chr1 110085124 110085409 -132578944 + AluJb SINE Alu 1 297 -15 249 33 0 0 chr1 110085454 110085484 -132578869 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 282 286 47 66 chr1 110085582 110085795 -132578558 + HAL1 LINE L1 2266 2474 -33 2493 210 66 12 chr1 110086021 110086438 -132577915 + L1ME1 LINE L1 5524 5986 -180 1955 169 2 102 chr1 110086438 110086871 -132577482 + MLT1B LTR MaLR 1 390 0 2493 210 66 12 chr1 110086871 110087057 -132577296 + L1ME1 LINE L1 5986 6160 -6 749 275 107 43 chr1 110087261 110087418 -132576935 - L2 LINE L2 -83 3230 3084 1554 208 42 50 chr1 110087418 110087818 -132576535 + MLT2C1 LTR ERVL 1 397 0 749 275 107 43 chr1 110087818 110088217 -132576136 - L2 LINE L2 -229 3084 2622 800 196 23 146 chr1 110088440 110088782 -132575571 + MER51C LTR ERV1 341 640 0 937 144 7 14 chr1 110088795 110088941 -132575412 + FRAM SINE Alu 16 160 -16 263 45 45 0 chr1 110089447 110089491 -132574862 + L1PA3 LINE L1 6107 6152 -3 388 351 116 42 chr1 110090060 110090493 -132573860 - L2 LINE L2 -349 2965 2479 1770 213 33 22 chr1 110090493 110090860 -132573493 - MLT1A2 LTR MaLR 0 374 4 388 351 116 42 chr1 110090860 110090993 -132573360 - L2 LINE L2 -835 2479 2357 2068 141 6 10 chr1 110091626 110091939 -132572414 + AluJb SINE Alu 1 312 0 34 55 0 0 chr1 110092009 110092064 -132572289 + AT_rich Low_complexity Low_complexity 1 55 0 180 316 105 0 chr1 110092734 110092791 -132571562 + L2 LINE L2 3136 3198 -74 2280 103 0 3 chr1 110092949 110093282 -132571071 + AluSq SINE Alu 1 332 0 382 322 55 0 chr1 110094113 110094259 -132570094 + MER117 DNA MER1_type 34 187 -10 409 311 80 13 chr1 110094375 110094526 -132569827 - MIR SINE MIR -82 180 20 514 245 138 8 chr1 110095052 110095245 -132569108 - MIR SINE MIR -37 225 13 377 219 123 58 chr1 110095359 110095514 -132568839 + MER112 DNA MER1_type 46 210 -50 2480 176 105 4 chr1 110095514 110096009 -132568344 - L1MB3 LINE L1 0 6183 5639 662 247 16 37 chr1 110096168 110096358 -132567995 - MLT1D LTR MaLR -7 498 313 2256 99 3 0 chr1 110096359 110096663 -132567690 - AluSp SINE Alu -8 305 1 1011 164 31 20 chr1 110096710 110096905 -132567448 - MLT1D LTR MaLR -308 197 1 291 211 0 18 chr1 110097309 110097366 -132566987 + L2 LINE L2 3251 3306 -7 616 200 192 8 chr1 110097381 110097511 -132566842 - FRAM SINE Alu -10 156 3 180 294 28 73 chr1 110097560 110097669 -132566684 - MIR3 SINE MIR -16 192 89 380 252 30 77 chr1 110097922 110098064 -132566289 + MER20 DNA MER1_type 41 179 -40 2261 106 3 0 chr1 110098076 110098377 -132565976 - AluSx SINE Alu -10 302 1 303 245 50 65 chr1 110098522 110098661 -132565692 + MER65A LTR ERV1 1 137 -308 205 246 108 15 chr1 110099427 110099492 -132564861 - MIR SINE MIR -13 249 179 294 143 0 0 chr1 110099499 110099541 -132564812 + LTR32 LTR ERVL 19 60 -411 * 764 203 26 7 chr1 110099537 110099690 -132564663 + LTR32 LTR ERVL 316 471 0 276 294 43 90 chr1 110099755 110099812 -132564541 - L2 LINE L2 -575 2739 2681 2266 102 7 0 chr1 110099812 110100105 -132564248 + AluSx SINE Alu 1 295 -17 276 294 43 90 chr1 110100105 110100258 -132564095 - L2 LINE L2 -633 2681 2539 264 271 59 25 chr1 110100470 110100588 -132563765 + MIR SINE MIR 34 155 -107 1519 164 42 98 chr1 110100650 110101101 -132563252 + Charlie1b DNA MER1_type 98 523 0 1982 142 3 0 chr1 110101308 110101604 -132562749 - AluSg SINE Alu -8 302 6 3415 155 17 104 chr1 110102110 110102744 -132561609 + LTR8 LTR ERV1 1 561 -130 2072 96 4 4 chr1 110102744 110103067 -132561286 + AluSx SINE Alu 1 323 0 3415 155 17 104 chr1 110103067 110103188 -132561165 + LTR8 LTR ERV1 561 691 0 242 232 0 0 chr1 110103236 110103292 -132561061 + A-rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr1 110104121 110104153 -132560200 + AT_rich Low_complexity Low_complexity 1 32 0 2257 63 0 14 chr1 110104478 110104805 -132559548 - AluY SINE Alu 0 323 1 2171 104 3 0 chr1 110104807 110105105 -132559248 - AluSp SINE Alu -14 299 1 390 318 65 65 chr1 110105608 110105825 -132558528 - MIR SINE MIR -41 221 5 326 253 69 0 chr1 110106270 110106357 -132557996 + MIR SINE MIR 164 256 -6 486 244 134 44 chr1 110106406 110106526 -132557827 - L1MC/D LINE L1 -364 5757 5649 2356 91 3 0 chr1 110106526 110106834 -132557519 - AluSp SINE Alu -1 312 4 486 244 134 44 chr1 110106834 110107010 -132557343 - L1MC/D LINE L1 -472 5649 5467 276 256 173 58 chr1 110107318 110107509 -132556844 - L2 LINE L2 -533 2781 2569 207 162 0 0 chr1 110107932 110107969 -132556384 + A-rich Low_complexity Low_complexity 1 37 0 214 228 262 48 chr1 110108395 110108540 -132555813 + MIR SINE MIR 84 259 -3 374 254 72 66 chr1 110108604 110108785 -132555568 + MIR SINE MIR 81 262 0 1520 187 7 7 chr1 110108997 110109270 -132555083 + AluJb SINE Alu 1 273 -39 2250 95 3 3 chr1 110109474 110109768 -132554585 + AluSx SINE Alu 1 294 -18 251 258 243 15 chr1 110110491 110110617 -132553736 + MIR SINE MIR 3 149 -62 4462 58 13 16 chr1 110111011 110112049 -132552304 - MER11A LTR ERVK 0 1266 1 2546 117 63 20 chr1 110112107 110112553 -132551800 + MER4C LTR ERV1 1 465 0 21 0 0 0 chr1 110112616 110112637 -132551716 + AT_rich Low_complexity Low_complexity 1 21 0 423 246 76 6 chr1 110113103 110113274 -132551079 - MER112 DNA MER1_type -1 259 77 278 379 90 0 chr1 110114663 110114808 -132549545 - MIR3 SINE MIR -6 202 45 215 200 0 17 chr1 110114956 110115016 -132549337 + CT-rich Low_complexity Low_complexity 2 60 0 1426 176 15 41 chr1 110115019 110115286 -132549067 - AluJo SINE Alu -52 260 1 22 0 0 0 chr1 110115329 110115351 -132549002 + AT_rich Low_complexity Low_complexity 1 22 0 1690 254 69 0 chr1 110115636 110115897 -132548456 - L1MCa LINE L1 -3120 3306 3064 330 26 0 0 chr1 110115897 110115936 -132548417 + (TC)n Simple_repeat Simple_repeat 2 40 0 1363 181 7 72 chr1 110115936 110116240 -132548113 - AluJo SINE Alu -28 284 1 1690 254 69 0 chr1 110116240 110116640 -132547713 - L1MCa LINE L1 -3361 3065 2404 2103 96 17 17 chr1 110116647 110116938 -132547415 - AluY SINE Alu -20 291 1 394 171 0 0 chr1 110116938 110117014 -132547339 + Tigger1 DNA MER2_type 2 77 -2341 43 20 0 0 chr1 110117015 110117065 -132547288 + AT_rich Low_complexity Low_complexity 1 50 0 852 137 0 0 chr1 110117068 110117185 -132547168 - FLAM_C SINE Alu -26 117 1 1716 181 0 14 chr1 110117185 110117478 -132546875 - AluJo SINE Alu -8 304 16 4321 107 27 57 chr1 110117529 110117676 -132546677 + Tigger1 DNA MER2_type 60 210 -2208 820 134 0 8 chr1 110117676 110117795 -132546558 - FLAM_C SINE Alu -15 118 1 4321 107 27 57 chr1 110117795 110118398 -132545955 + Tigger1 DNA MER2_type 210 787 -1631 5449 142 91 17 chr1 110118432 110118968 -132545385 - L1MCa LINE L1 -4327 2099 1604 2012 258 20 30 chr1 110118968 110119526 -132544827 - MLT2B3 LTR ERVL -2 552 1 5449 142 91 17 chr1 110119526 110120379 -132543974 - L1MCa LINE L1 -4822 1604 512 2055 105 35 3 chr1 110121098 110121384 -132542969 + AluSx SINE Alu 1 295 -17 308 276 149 0 chr1 110121409 110121496 -132542857 - MIR SINE MIR -62 146 47 21 0 0 0 chr1 110121602 110121623 -132542730 + AT_rich Low_complexity Low_complexity 1 21 0 269 299 39 0 chr1 110122321 110122448 -132541905 - MER103 DNA DNA -12 154 23 269 254 18 0 chr1 110122458 110122513 -132541840 - L2 LINE L2 -8 3305 3250 932 83 8 0 chr1 110122566 110122699 -132541654 - L1PA15 LINE L1 -2 6163 6030 12698 113 23 38 chr1 110123142 110124302 -132540051 - Tigger2 DNA MER2_type -1 2717 1541 1963 146 85 46 chr1 110124302 110124714 -132539639 - MSTA LTR MaLR 0 428 1 12698 113 23 38 chr1 110124714 110124733 -132539620 - Tigger2 DNA MER2_type -1177 1541 1523 2155 111 3 0 chr1 110124733 110125022 -132539331 - AluSx SINE Alu -22 290 1 12698 113 23 38 chr1 110125022 110125427 -132538926 - Tigger2 DNA MER2_type -1195 1523 1113 1885 48 4 0 chr1 110125427 110125604 -132538749 - AluY SINE Alu -2 309 129 2271 75 7 7 chr1 110125604 110125920 -132538433 - AluSp SINE Alu 0 313 1 1885 48 4 0 chr1 110125920 110125972 -132538381 - AluY SINE Alu -182 129 79 12698 113 23 38 chr1 110125972 110126575 -132537778 - Tigger2 DNA MER2_type -1605 1113 561 1193 144 0 6 chr1 110126575 110126749 -132537604 + AluJo SINE Alu 1 173 -139 699 120 56 0 chr1 110126749 110126891 -132537462 - Tigger2 DNA MER2_type -2344 374 225 1352 126 29 4 chr1 110126991 110127229 -132537124 - Tigger2 DNA MER2_type -2474 244 1 403 300 89 98 chr1 110127544 110127871 -132536482 - L2 LINE L2 0 3272 2949 900 150 8 0 chr1 110128391 110128524 -132535829 + FLAM_C SINE Alu 1 134 -9 383 261 0 33 chr1 110128653 110128745 -132535608 + L2 LINE L2 3224 3312 -1 914 128 0 8 chr1 110129763 110129896 -132534457 - AluJb SINE Alu -180 132 1 535 308 67 0 chr1 110130702 110130897 -132533456 + MIR SINE MIR 49 256 -6 333 389 21 16 chr1 110131293 110131486 -132532867 - MIR3 SINE MIR 0 208 15 24 32 0 0 chr1 110132048 110132079 -132532274 + AT_rich Low_complexity Low_complexity 1 31 0 2201 106 0 22 chr1 110132504 110132816 -132531537 + AluSg SINE Alu 1 305 -5 262 222 0 0 chr1 110133695 110133758 -132530595 + T-rich Low_complexity Low_complexity 1 63 0 2390 34 0 10 chr1 110133759 110134053 -132530300 - L1PA4 LINE L1 0 6155 5865 369 258 46 33 chr1 110134206 110134357 -132529996 - MARNA DNA Mariner -76 510 358 1060 212 0 9 chr1 110135281 110135493 -132528860 + MER6B DNA MER2_type 1 210 0 269 280 83 24 chr1 110135633 110135801 -132528552 + L2 LINE L2 2242 2419 -895 2658 266 93 12 chr1 110135982 110137180 -132527173 - L1MC4 LINE L1 0 8042 6748 186 367 43 29 chr1 110137280 110137396 -132526957 + L2 LINE L2 2606 2726 -588 1915 155 0 16 chr1 110137396 110137700 -132526653 + AluJo SINE Alu 1 299 -13 186 367 43 29 chr1 110137700 110137722 -132526631 + L2 LINE L2 2726 2746 -568 748 167 0 51 chr1 110138579 110138717 -132525636 + FLAM_C SINE Alu 1 131 -2 1125 252 100 0 chr1 110138722 110139032 -132525321 - MER58B DNA MER1_type 0 341 1 1677 182 3 46 chr1 110139479 110139656 -132524697 - AluJb SINE Alu -2 310 152 2546 53 0 0 chr1 110139656 110139957 -132524396 - AluY SINE Alu -10 301 1 1677 182 3 46 chr1 110139957 110140103 -132524250 - AluJb SINE Alu -160 152 1 22 0 0 0 chr1 110140359 110140381 -132523972 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 110143072 110143094 -132521259 + AT_rich Low_complexity Low_complexity 1 22 0 539 245 87 25 chr1 110143288 110143484 -132520869 - MIR SINE MIR 0 262 55 1680 153 27 53 chr1 110143528 110143828 -132520525 + AluJo SINE Alu 1 292 -20 536 313 78 11 chr1 110143952 110144131 -132520222 - MIR SINE MIR -52 210 20 2184 130 122 8 chr1 110144162 110144546 -132519807 - MSTA LTR MaLR 0 428 1 452 274 86 17 chr1 110144934 110145109 -132519244 + MER5A DNA MER1_type 3 189 0 26 30 0 0 chr1 110145210 110145243 -132519110 + AT_rich Low_complexity Low_complexity 1 33 0 2133 133 43 0 chr1 110145251 110145574 -132518779 + MER1B DNA MER1_type 1 337 0 1015 276 114 39 chr1 110146717 110147013 -132517340 - L1M4 LINE L1 -1209 4937 4665 1516 134 4 8 chr1 110147013 110147251 -132517102 - AluJb SINE Alu -16 296 60 1015 276 114 39 chr1 110147251 110148106 -132516247 - L1M4 LINE L1 -1481 4665 3700 2023 156 7 0 chr1 110148235 110148542 -132515811 + AluJb SINE Alu 1 309 -3 2103 120 0 0 chr1 110148646 110148938 -132515415 + AluSg SINE Alu 1 292 -18 2127 115 0 26 chr1 110149177 110149489 -132514864 - AluSg SINE Alu -6 304 1 441 0 0 0 chr1 110149704 110149753 -132514600 + (TG)n Simple_repeat Simple_repeat 2 50 0 303 287 36 44 chr1 110149785 110150036 -132514317 - L1M4 LINE L1 -3149 2997 2749 387 250 7 40 chr1 110150112 110150264 -132514089 - L1ME LINE L1 -299 5822 5676 21 0 0 0 chr1 110150633 110150654 -132513699 + AT_rich Low_complexity Low_complexity 1 21 0 337 163 98 0 chr1 110150667 110150759 -132513594 - HAL1b LINE L1 -651 697 597 21 0 0 0 chr1 110150816 110150837 -132513516 + AT_rich Low_complexity Low_complexity 1 21 0 2293 91 10 0 chr1 110151160 110151458 -132512895 - AluY SINE Alu -10 301 1 326 135 19 0 chr1 110151591 110151643 -132512710 + MER5B DNA MER1_type 1 53 -125 216 282 13 64 chr1 110151628 110151706 -132512647 - MER5B DNA MER1_type -104 74 1 * 2103 133 0 0 chr1 110151959 110152261 -132512092 + AluSx SINE Alu 1 302 -10 731 265 107 26 chr1 110152656 110152890 -132511463 + MIR SINE MIR 7 259 -3 366 61 0 0 chr1 110154279 110154328 -132510025 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 196 329 43 31 chr1 110154541 110154702 -132509651 + L2 LINE L2 3150 3312 -1 212 325 26 0 chr1 110155444 110155521 -132508832 - MIR SINE MIR -6 256 178 866 150 0 0 chr1 110155521 110155641 -132508712 + FLAM_C SINE Alu 1 120 -23 220 217 0 0 chr1 110155677 110155723 -132508630 - MIR SINE MIR -100 162 117 * 2110 275 63 37 chr1 110155716 110156196 -132508157 + L2 LINE L2 2224 2747 -566 2348 75 0 33 chr1 110156196 110156503 -132507850 + AluY SINE Alu 1 297 -14 2110 275 63 37 chr1 110156503 110156831 -132507522 + L2 LINE L2 2747 3065 -248 903 246 40 9 chr1 110157360 110157588 -132506765 + MIR SINE MIR 6 240 -22 346 173 12 37 chr1 110157733 110157814 -132506539 - MADE1 DNA Mariner 0 80 2 521 281 88 10 chr1 110157850 110158042 -132506311 + MIR SINE MIR 56 262 0 1740 168 0 9 chr1 110159201 110159517 -132504836 + L1PA16 LINE L1 5795 6107 -59 1743 177 3 3 chr1 110160692 110161004 -132503349 - AluJo SINE Alu 0 312 1 574 132 28 0 chr1 110161053 110161159 -132503194 + L1MA8 LINE L1 6183 6291 0 22 0 0 0 chr1 110161362 110161384 -132502969 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr1 110162026 110162063 -132502290 + (TA)n Simple_repeat Simple_repeat 2 38 0 2355 85 10 7 chr1 110162064 110162369 -132501984 - AluY SINE Alu -5 306 1 21 0 0 0 chr1 110163260 110163281 -132501072 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr1 110163398 110163460 -132500893 + AT_rich Low_complexity Low_complexity 1 62 0 1957 151 10 3 chr1 110163776 110164075 -132500278 - AluSx SINE Alu -11 301 1 1836 138 0 69 chr1 110164262 110164582 -132499771 - AluJo SINE Alu -14 298 1 2908 140 78 64 chr1 110165414 110166228 -132498125 - LTR1 LTR ERV1 0 785 7 369 321 119 18 chr1 110166400 110166568 -132497785 + MIR SINE MIR 28 212 -50 731 173 19 43 chr1 110166674 110166836 -132497517 + L1MB3 LINE L1 5854 6011 -169 541 66 0 0 chr1 110166839 110166915 -132497438 - AluSx SINE Alu -1 308 233 1669 120 4 0 chr1 110166977 110167210 -132497143 - AluSx SINE Alu -78 234 1 583 190 101 0 chr1 110167213 110167371 -132496982 + L1MB3 LINE L1 6009 6182 -1 2303 158 46 13 chr1 110167384 110167840 -132496513 + L1MB5 LINE L1 5694 6164 -10 271 260 115 0 chr1 110168218 110168314 -132496039 + L1ME LINE L1 17 123 -5947 * 677 220 12 59 chr1 110168310 110168565 -132495788 + L1M4 LINE L1 5047 5289 -857 584 318 65 18 chr1 110168576 110168853 -132495500 + L1ME LINE L1 138 427 -5643 542 231 15 15 chr1 110168858 110168992 -132495361 + L1MB2 LINE L1 3995 4128 -2018 4760 184 20 5 chr1 110169221 110170628 -132493725 + L1MB2 LINE L1 4740 6169 -2 2602 231 34 29 chr1 110170633 110171476 -132492877 + L1M4 LINE L1 3472 4319 -1827 244 279 0 0 chr1 110171499 110171567 -132492786 + CT-rich Low_complexity Low_complexity 2 69 0 1918 117 55 33 chr1 110171667 110172034 -132492319 + THE1C LTR MaLR 1 375 0 516 253 81 0 chr1 110172444 110172618 -132491735 + L1M4 LINE L1 4522 4709 -1437 * 1320 189 51 0 chr1 110172615 110172890 -132491463 + L1MC3 LINE L1 6692 6980 -805 1673 178 9 6 chr1 110172905 110173254 -132491099 + L1MC3 LINE L1 7415 7764 -21 536 259 38 49 chr1 110173259 110173522 -132490831 + L1M4 LINE L1 4690 4949 -1197 359 237 97 9 chr1 110173740 110173854 -132490499 - MIR SINE MIR -73 189 66 230 209 75 15 chr1 110174243 110174310 -132490043 + LTR16C LTR ERVL 409 479 -12 643 211 75 0 chr1 110174449 110174610 -132489743 + L1MC3 LINE L1 6808 6980 -805 1474 88 70 0 chr1 110175640 110175855 -132488498 - MER30 DNA MER1_type 0 230 1 274 269 42 17 chr1 110182790 110182974 -132481379 + L2 LINE L2 3043 3313 0 273 282 66 9 chr1 110185359 110185490 -132478863 + MIR SINE MIR 20 155 -63 371 263 0 21 chr1 110185770 110185865 -132478488 + MIR SINE MIR 33 125 -83 1518 183 34 8 chr1 110185869 110186137 -132478216 + AluJb SINE Alu 1 275 -37 189 0 0 0 chr1 110186143 110186164 -132478189 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1674 237 122 71 chr1 110186185 110186315 -132478038 - L2 LINE L2 0 3313 3191 917 213 39 0 chr1 110186315 110186522 -132477831 - MER58C DNA MER1_type 0 215 1 1674 237 122 71 chr1 110186522 110187486 -132476867 - L2 LINE L2 -122 3191 2104 1205 56 12 0 chr1 110187515 110187676 -132476677 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 2112 108 0 0 chr1 110187679 110187948 -132476405 - AluSx SINE Alu -30 282 14 1236 170 5 22 chr1 110188822 110189045 -132475308 + MER20 DNA MER1_type 1 219 0 357 82 0 0 chr1 110189527 110189544 -132474809 + (CA)n Simple_repeat Simple_repeat 1 66 0 357 82 0 0 chr1 110189544 110189593 -132474760 + (CA)n Simple_repeat Simple_repeat 2 50 0 183 80 0 0 chr1 110189819 110189844 -132474509 + (TA)n Simple_repeat Simple_repeat 2 26 0 244 255 21 11 chr1 110189851 110189945 -132474408 - L1MC4 LINE L1 -1339 6703 6609 442 276 59 58 chr1 110190751 110190946 -132473407 - MIR SINE MIR -60 202 8 767 153 0 36 chr1 110191703 110191840 -132472513 - FLAM_C SINE Alu 0 133 2 333 313 88 25 chr1 110192119 110192279 -132472074 + MIR SINE MIR 90 259 -3 2115 107 27 7 chr1 110192280 110192579 -132471774 + AluSx SINE Alu 1 305 -7 739 304 46 34 chr1 110192894 110193331 -132471022 + MLT1J LTR MaLR 24 465 -46 204 216 0 0 chr1 110193941 110193978 -132470375 - L2 LINE L2 -12 3301 3265 1737 136 21 0 chr1 110194006 110194285 -132470068 + L1PB4 LINE L1 5865 6149 -7 243 281 207 16 chr1 110196215 110196336 -132468017 + MIR SINE MIR 32 175 -87 232 203 0 87 chr1 110196837 110196906 -132467447 - L2 LINE L2 0 3313 3251 622 275 99 6 chr1 110198806 110198988 -132465365 + MIR SINE MIR 50 248 -14 327 291 63 16 chr1 110199257 110199384 -132464969 - MIR SINE MIR -82 180 48 206 118 0 0 chr1 110199784 110199818 -132464535 + (T)n Simple_repeat Simple_repeat 1 34 0 410 298 28 24 chr1 110200173 110200350 -132464003 + MIR SINE MIR 33 212 -50 361 211 276 8 chr1 110200708 110200831 -132463522 + MIR SINE MIR 57 212 -50 1602 175 34 7 chr1 110202535 110202827 -132461526 + AluJb SINE Alu 1 300 -12 227 343 0 0 chr1 110206257 110206324 -132458029 + L2 LINE L2 3242 3308 -5 616 273 99 19 chr1 110206580 110206741 -132457612 - MER91A DNA MER1_type -20 176 3 187 161 36 0 chr1 110207082 110207138 -132457215 + (TG)n Simple_repeat Simple_repeat 1 58 0 21 0 0 0 chr1 110208407 110208428 -132455925 + AT_rich Low_complexity Low_complexity 1 21 0 840 237 27 5 chr1 110209080 110209266 -132455087 + MIR SINE MIR 41 230 -32 25 31 0 0 chr1 110209278 110209310 -132455043 + AT_rich Low_complexity Low_complexity 1 32 0 591 259 100 45 chr1 110209433 110209723 -132454630 + MARNA DNA Mariner 239 544 -42 1230 178 0 33 chr1 110209802 110210016 -132454337 - AluJo SINE Alu -19 293 87 451 358 75 0 chr1 110210221 110210422 -132453931 - MIR SINE MIR -32 230 15 1562 162 0 42 chr1 110211743 110211910 -132452443 - AluJo SINE Alu -13 299 145 2480 52 3 16 chr1 110211910 110212220 -132452133 - AluY SINE Alu -5 306 1 1562 162 0 42 chr1 110212220 110212317 -132452036 - AluJo SINE Alu -167 145 46 2004 159 0 10 chr1 110212378 110212686 -132451667 - AluSx SINE Alu -2 310 6 493 315 45 25 chr1 110213799 110213999 -132450354 - MIR3 SINE MIR -1 207 4 324 120 0 0 chr1 110214734 110214784 -132449569 + (TG)n Simple_repeat Simple_repeat 2 51 0 422 343 69 42 chr1 110214993 110215328 -132449025 + L3 LINE CR1 35 378 -1199 28 61 0 0 chr1 110215371 110215420 -132448933 + AT_rich Low_complexity Low_complexity 1 49 0 330 80 0 0 chr1 110215876 110215926 -132448427 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 332 281 47 0 chr1 110216378 110216506 -132447847 - L1 LINE L1 -1747 4399 4266 220 360 137 12 chr1 110216676 110216837 -132447516 + L3 LINE CR1 990 1170 -407 466 267 62 10 chr1 110216847 110217042 -132447311 + L3 LINE CR1 1298 1502 -75 197 0 71 0 chr1 110217528 110217556 -132446797 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 912 88 7 14 chr1 110217961 110218108 -132446245 + (TTTTC)n Simple_repeat Simple_repeat 5 150 0 2134 125 0 0 chr1 110218108 110218388 -132445965 - AluSx SINE Alu -32 280 1 207 318 30 0 chr1 110218503 110218569 -132445784 + MIR SINE MIR 87 154 -108 22 56 0 0 chr1 110219079 110219115 -132445238 + AT_rich Low_complexity Low_complexity 1 36 0 781 258 0 0 chr1 110219911 110220089 -132444264 + MER45A DNA AcHobo 1 178 0 306 0 0 0 chr1 110220389 110220423 -132443930 + (T)n Simple_repeat Simple_repeat 1 34 0 201 307 22 22 chr1 110220569 110220706 -132443647 + L2 LINE L2 2999 3135 -178 235 280 0 0 chr1 110220709 110220759 -132443594 + L2 LINE L2 3259 3308 -5 472 209 148 0 chr1 110225725 110225840 -132438513 - MIR SINE MIR -97 165 34 374 289 53 48 chr1 110225929 110226116 -132438237 + HAL1 LINE L1 576 763 -1744 240 247 101 25 chr1 110226692 110226850 -132437503 + LTR16B LTR ERVL 293 462 -2 482 220 193 20 chr1 110226850 110227000 -132437353 + L2 LINE L2 3136 3311 -2 640 254 48 16 chr1 110227086 110227275 -132437078 - LTR16B LTR ERVL -264 200 6 1540 265 163 30 chr1 110227275 110228083 -132436270 - L2 LINE L2 -172 3141 2236 187 373 45 27 chr1 110228333 110228443 -132435910 - L2 LINE L2 -45 3227 3116 234 174 0 0 chr1 110229388 110229434 -132434919 + CT-rich Low_complexity Low_complexity 2 47 0 1013 234 80 29 chr1 110229883 110230195 -132434158 + L2 LINE L2 1941 2268 -1046 886 302 49 29 chr1 110230189 110230537 -132433816 + L2 LINE L2 2952 3306 -7 * 365 313 21 35 chr1 110230589 110230733 -132433620 - MIR SINE MIR -118 144 3 212 220 20 0 chr1 110233014 110233064 -132431289 + (TA)n Simple_repeat Simple_repeat 2 52 0 230 366 66 26 chr1 110233118 110233345 -132431008 + MIR SINE MIR 15 250 -12 233 250 17 17 chr1 110233551 110233611 -132430742 - MIR SINE MIR -114 148 89 344 245 0 10 chr1 110234201 110234303 -132430050 + C-rich Low_complexity Low_complexity 2 102 0 2667 141 31 4 chr1 110237234 110237689 -132426664 + MER41B LTR ERV1 81 547 -88 626 271 64 61 chr1 110237989 110238284 -132426069 - L2 LINE L2 -1 3312 3017 782 284 47 8 chr1 110239217 110239453 -132424900 - LTR16B LTR ERVL -113 351 107 1227 287 149 21 chr1 110239632 110240378 -132423975 - L2 LINE L2 -947 2367 1527 369 244 76 17 chr1 110240466 110240585 -132423768 - MLT1J LTR MaLR -385 126 1 1220 94 120 90 chr1 110240629 110240863 -132423490 - AluSg/x SINE Alu -4 308 68 513 351 48 17 chr1 110241640 110241871 -132422482 - MIR SINE MIR -17 245 8 2466 157 26 4 chr1 110242135 110242599 -132421754 - L1MB8 LINE L1 -9 6169 5696 2006 268 102 74 chr1 110243044 110243570 -132420783 + L2 LINE L2 803 1372 -1942 1732 148 48 17 chr1 110243570 110243860 -132420493 - AluJo SINE Alu -13 299 1 2006 268 102 74 chr1 110243860 110244319 -132420034 + L2 LINE L2 1372 1816 -1498 1061 283 139 31 chr1 110244320 110244443 -132419910 + L2 LINE L2 2301 2409 -904 2040 132 10 7 chr1 110244443 110244739 -132419614 - AluSq SINE Alu -16 297 1 1061 283 139 31 chr1 110244739 110245329 -132419024 + L2 LINE L2 2409 3180 -133 22 0 0 0 chr1 110245329 110245351 -132419002 + AT_rich Low_complexity Low_complexity 1 22 0 1736 198 0 10 chr1 110245516 110245804 -132418549 + AluJb SINE Alu 1 285 -27 458 278 119 13 chr1 110246414 110246565 -132417788 + L2 LINE L2 3106 3272 0 315 71 0 0 chr1 110247389 110247431 -132416922 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 2003 158 0 13 chr1 110247441 110247757 -132416596 - AluSx SINE Alu 0 312 1 2524 85 0 0 chr1 110247971 110248278 -132416075 - AluSc SINE Alu -2 307 1 284 355 11 0 chr1 110248315 110248408 -132415945 + MIR3 SINE MIR 115 208 0 189 0 0 0 chr1 110249930 110249951 -132414402 + (A)n Simple_repeat Simple_repeat 1 21 0 378 288 27 18 chr1 110250891 110251002 -132413351 - MIR SINE MIR 0 262 151 376 268 221 0 chr1 110251955 110252082 -132412271 + MIR SINE MIR 36 190 -72 1907 121 51 0 chr1 110252156 110252429 -132411924 + AluSc SINE Alu 16 302 -7 1422 249 119 28 chr1 110252692 110253186 -132411167 - MLT1F LTR MaLR 0 542 4 401 288 89 68 chr1 110253189 110253526 -132410827 - MLT1F-int LTR MaLR 0 1371 1028 2310 109 3 0 chr1 110253626 110253937 -132410416 - AluSx SINE Alu 0 312 1 710 238 38 26 chr1 110254467 110254732 -132409621 - MLT1F-int LTR MaLR -793 578 311 3379 145 9 5 chr1 110254741 110255301 -132409052 - L1MC1 LINE L1 0 6333 5772 225 0 0 0 chr1 110255420 110255445 -132408908 + (TG)n Simple_repeat Simple_repeat 2 26 0 462 320 0 0 chr1 110255494 110255619 -132408734 - MLT2F LTR ERVL -59 604 480 902 216 0 0 chr1 110255706 110255868 -132408485 - FRAM SINE Alu -3 163 2 511 294 35 24 chr1 110256432 110256602 -132407751 + MIR3 SINE MIR 21 192 -16 22 80 0 0 chr1 110256680 110256730 -132407623 + AT_rich Low_complexity Low_complexity 1 50 0 2160 115 0 14 chr1 110257788 110258084 -132406269 - AluSg1 SINE Alu -17 292 1 2594 128 39 29 chr1 110258112 110258628 -132405725 + L1MA7 LINE L1 5746 6266 -25 222 379 0 0 chr1 110258645 110258732 -132405621 - MIR SINE MIR -150 112 26 285 159 0 0 chr1 110259105 110259149 -132405204 - MER45 DNA AcHobo -3 1578 1535 499 239 9 0 chr1 110259195 110259308 -132405045 + L1MD3 LINE L1 5703 5816 -1969 379 131 135 8 chr1 110259315 110259418 -132404935 - MER45 DNA AcHobo -55 123 1 2859 216 47 11 chr1 110260579 110261434 -132402919 + L1MC3 LINE L1 5566 6586 -1199 * 5288 197 28 4 chr1 110261433 110263316 -132401037 + L1PA16 LINE L1 4125 6058 -108 241 172 35 0 chr1 110263319 110263377 -132400976 + L1PA16 LINE L1 6097 6156 -10 3352 234 50 56 chr1 110263511 110264867 -132399486 + L1MD3 LINE L1 6643 7990 -5 269 328 90 8 chr1 110264911 110265033 -132399320 - L2 LINE L2 -4 3268 3137 2331 114 46 8 chr1 110265306 110265657 -132398696 + THE1B LTR MaLR 1 364 0 2469 57 0 7 chr1 110265727 110266027 -132398326 + AluY SINE Alu 1 298 -13 6796 192 19 62 chr1 110266176 110267077 -132397276 - L1MEc LINE L1 -2186 3960 3022 759 168 0 30 chr1 110267077 110267208 -132397145 - FLAM_A SINE Alu -5 128 2 6796 192 19 62 chr1 110267208 110267871 -132396482 - L1MEc LINE L1 -3124 3022 2449 236 116 23 0 chr1 110267871 110267914 -132396439 + MADE1 DNA Mariner 2 45 -35 6796 192 19 62 chr1 110267914 110268086 -132396267 - L1MEc LINE L1 -3697 2449 2271 1347 214 24 72 chr1 110268089 110268446 -132395907 + L1ME3A LINE L1 5761 6097 -73 1797 153 7 29 chr1 110268446 110268753 -132395600 + AluJb SINE Alu 3 302 -10 1347 214 24 72 chr1 110268753 110268810 -132395543 + L1ME3A LINE L1 6097 6155 -15 385 329 61 43 chr1 110268823 110269077 -132395276 + L2 LINE L2 2777 3047 -266 1112 281 97 48 chr1 110269081 110269656 -132394697 + L2 LINE L2 2719 3313 0 21 0 0 0 chr1 110269966 110269987 -132394366 + AT_rich Low_complexity Low_complexity 1 21 0 290 239 195 9 chr1 110270550 110270663 -132393690 + MIR3 SINE MIR 50 183 -25 369 300 33 8 chr1 110270770 110270890 -132393463 - L2 LINE L2 0 3313 3191 54 40 0 0 chr1 110271105 110271180 -132393173 + AT_rich Low_complexity Low_complexity 1 75 0 333 0 0 0 chr1 110271365 110271402 -132392951 + (TG)n Simple_repeat Simple_repeat 2 38 0 873 300 8 16 chr1 110271841 110272091 -132392262 + MIR SINE MIR 15 262 0 1877 74 0 0 chr1 110273300 110273358 -132390995 + AluSq SINE Alu 74 131 -182 558 108 0 0 chr1 110273358 110273441 -132390912 + (CA)n Simple_repeat Simple_repeat 2 84 0 1877 74 0 0 chr1 110273441 110273613 -132390740 + AluSq SINE Alu 130 304 -9 39 22 0 0 chr1 110274137 110274183 -132390170 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr1 110274987 110275016 -132389337 + AT_rich Low_complexity Low_complexity 1 29 0 404 274 113 16 chr1 110276216 110276340 -132388013 - MER5A DNA MER1_type -19 170 35 380 258 137 16 chr1 110276230 110276354 -132387999 + MER5A DNA MER1_type 45 183 -6 * 313 281 132 24 chr1 110276511 110276678 -132387675 - MIR SINE MIR -4 258 74 284 387 43 33 chr1 110276684 110276986 -132387367 + L2 LINE L2 2145 2449 -865 780 229 29 123 chr1 110277088 110277437 -132386916 - MLT1H LTR MaLR -3 546 231 353 314 118 39 chr1 110277602 110277806 -132386547 + L2 LINE L2 2616 2835 -479 468 387 135 4 chr1 110277957 110278223 -132386130 + L2 LINE L2 2967 3267 -5 204 268 14 56 chr1 110279007 110279078 -132385275 + MIR SINE MIR 103 170 -92 400 346 136 31 chr1 110279169 110279455 -132384898 - L2 LINE L2 -4 3268 2953 467 212 0 10 chr1 110280207 110280306 -132384047 + MER94 DNA DNA 37 134 0 596 231 202 49 chr1 110280450 110280653 -132383700 + MIR SINE MIR 2 235 -27 745 196 25 13 chr1 110281120 110281278 -132383075 - MIR SINE MIR 0 262 103 203 100 0 0 chr1 110282396 110282426 -132381927 - L2 LINE L2 0 3272 3243 437 292 26 58 chr1 110284547 110284773 -132379580 + L2 LINE L2 2595 2813 -501 2020 120 3 39 chr1 110284885 110285194 -132379159 + AluSx SINE Alu 1 298 -14 187 77 26 26 chr1 110285209 110285248 -132379105 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 257 234 0 0 chr1 110286097 110286144 -132378209 - L2 LINE L2 -13 3259 3213 35 24 0 0 chr1 110286151 110286193 -132378160 + AT_rich Low_complexity Low_complexity 1 42 0 765 129 17 0 chr1 110286195 110286311 -132378042 - FLAM_C SINE Alu -25 118 1 372 315 14 7 chr1 110286336 110286479 -132377874 - MIR SINE MIR -70 192 49 294 282 103 34 chr1 110286999 110287233 -132377120 + L1ME4a LINE L1 5869 6118 -3 2091 25 0 0 chr1 110289415 110289693 -132374660 - L1PA3 LINE L1 0 6155 5894 2219 151 3 24 chr1 110290619 110290991 -132373362 + THE1B LTR MaLR 1 364 0 468 172 23 11 chr1 110291023 110291110 -132373243 + AluS SINE Alu 1 88 -225 1251 144 15 0 chr1 110291239 110291434 -132372919 + AluJb SINE Alu 115 312 0 462 296 159 32 chr1 110291499 110291719 -132372634 + MIR SINE MIR 14 261 -1 377 207 233 0 chr1 110291903 110292019 -132372334 + MLT2F LTR ERVL 102 244 -419 278 285 46 46 chr1 110293168 110293319 -132371034 - MIR SINE MIR -9 253 103 1975 173 0 0 chr1 110294094 110294395 -132369958 - AluJb SINE Alu -11 301 1 323 299 123 5 chr1 110294439 110294844 -132369509 - L1M4 LINE L1 -3584 2562 2110 205 235 12 12 chr1 110294873 110294954 -132369399 + CT-rich Low_complexity Low_complexity 4 84 0 192 152 0 0 chr1 110295025 110295058 -132369295 + (CA)n Simple_repeat Simple_repeat 2 34 0 232 319 11 0 chr1 110295063 110295157 -132369196 + (TA)n Simple_repeat Simple_repeat 2 96 0 422 314 7 0 chr1 110295217 110295370 -132368983 - HAL1 LINE L1 -860 1647 1494 943 227 4 31 chr1 110295995 110296220 -132368133 - MER20 DNA MER1_type 0 219 1 1085 170 4 52 chr1 110296918 110297147 -132367206 - MER20 DNA MER1_type -1 218 1 1022 101 7 0 chr1 110298674 110298823 -132365530 + MER41B LTR ERV1 486 635 0 392 156 33 56 chr1 110298823 110298913 -132365440 + MER41B-int LTR ERV1 1 88 -5858 * 9183 79 33 15 chr1 110298908 110300193 -132364160 + MER41B-int LTR ERV1 4639 5946 0 3324 117 54 8 chr1 110300195 110300717 -132363636 + MER41B LTR ERV1 3 548 -87 1835 114 28 0 chr1 110300783 110301038 -132363315 - AluSg SINE Alu -10 300 39 2536 255 38 13 chr1 110301516 110302119 -132362234 - MLT2E LTR ERVL -7 621 4 1013 212 84 64 chr1 110302281 110302734 -132361619 + MLT1G1 LTR MaLR 1 555 -35 337 127 18 0 chr1 110303050 110303105 -132361248 + L2 LINE L2 3258 3313 0 311 315 84 46 chr1 110303702 110303940 -132360413 + MIR SINE MIR 16 262 0 4773 145 23 15 chr1 110304048 110304939 -132359414 - L1PA14 LINE L1 0 6168 5295 1477 80 156 11 chr1 110304939 110305202 -132359151 - AluY SINE Alu 0 301 1 4773 145 23 15 chr1 110305202 110306016 -132358337 - L1PA14 LINE L1 -873 5295 4489 392 306 50 6 chr1 110308605 110308785 -132355568 + L1ME4a LINE L1 4975 5162 -984 312 296 114 32 chr1 110308776 110308996 -132355357 + L1ME4a LINE L1 5661 5898 -223 * 312 255 102 0 chr1 110309094 110309192 -132355161 - L1MC4 LINE L1 -26 8016 7909 273 353 83 13 chr1 110309222 110309378 -132354975 - L3 LINE CR1 -59 1518 1352 270 75 0 0 chr1 110309518 110309558 -132354795 + L1PA8 LINE L1 6129 6168 -4 267 31 0 0 chr1 110310127 110310159 -132354194 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr1 110310158 110310187 -132354166 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 34 0 0 0 chr1 110311842 110311876 -132352477 + AT_rich Low_complexity Low_complexity 1 34 0 201 313 16 0 chr1 110312798 110312862 -132351491 + MIR SINE MIR 87 151 -111 21 0 0 0 chr1 110314439 110314460 -132349893 + AT_rich Low_complexity Low_complexity 1 21 0 248 278 42 0 chr1 110315310 110315382 -132348971 - L2 LINE L2 -8 3264 3190 201 308 31 0 chr1 110315781 110315846 -132348507 - MIR SINE MIR -11 251 185 291 167 0 33 chr1 110315993 110316053 -132348300 - L2 LINE L2 0 3313 3256 374 252 93 43 chr1 110316132 110316271 -132348082 - MIR SINE MIR -110 152 7 2674 167 24 9 chr1 110316391 110316936 -132347417 - L1MC/D LINE L1 -499 5743 5198 1943 105 24 20 chr1 110317015 110317310 -132347043 - AluSx SINE Alu -14 298 3 1129 103 0 11 chr1 110317415 110317599 -132346754 - L1MA4 LINE L1 -12 6288 6107 3970 236 81 24 chr1 110317600 110320226 -132344127 - L1MDa LINE L1 -2417 4123 1339 21 0 0 0 chr1 110321445 110321466 -132342887 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 110321737 110321760 -132342593 + AT_rich Low_complexity Low_complexity 1 23 0 483 251 86 55 chr1 110322071 110322398 -132341955 - L1MEd LINE L1 -4973 1232 953 180 111 0 0 chr1 110322820 110322847 -132341506 + (T)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr1 110322869 110322895 -132341458 + AT_rich Low_complexity Low_complexity 1 26 0 6251 140 0 0 chr1 110322895 110323867 -132340486 - L1PA4 LINE L1 -3 6152 5184 26 0 0 0 chr1 110323989 110324015 -132340338 + AT_rich Low_complexity Low_complexity 1 26 0 1703 130 25 14 chr1 110324569 110324846 -132339507 + AluSx SINE Alu 1 280 -32 3074 110 15 4 chr1 110324851 110325307 -132339046 - L1PA11 LINE L1 -4 6170 5710 257 0 30 0 chr1 110325954 110325987 -132338366 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 33 66 0 0 chr1 110327350 110327411 -132336942 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr1 110328330 110328353 -132336000 + AT_rich Low_complexity Low_complexity 1 23 0 347 130 13 0 chr1 110328381 110328458 -132335895 + GA-rich Low_complexity Low_complexity 1 78 0 556 125 0 0 chr1 110328658 110328746 -132335607 + L1PA5 LINE L1 6067 6154 0 189 74 0 0 chr1 110328776 110328803 -132335550 + (A)n Simple_repeat Simple_repeat 1 27 0 1914 155 0 3 chr1 110328806 110329103 -132335250 + AluJb SINE Alu 1 296 -16 186 71 0 0 chr1 110329112 110329140 -132335213 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 284 309 0 15 chr1 110330408 110330476 -132333877 + L2 LINE L2 3194 3260 -12 220 329 12 0 chr1 110330774 110330859 -132333494 - L2 LINE L2 -2 3270 3185 484 286 69 23 chr1 110330888 110331063 -132333290 - MIR SINE MIR -30 232 50 198 103 0 0 chr1 110331275 110331304 -132333049 + (TG)n Simple_repeat Simple_repeat 2 30 0 1308 150 17 77 chr1 110331324 110331624 -132332729 - L1MA7 LINE L1 -23 6268 5987 473 298 46 0 chr1 110331638 110331789 -132332564 + MIR SINE MIR 105 262 0 5886 158 4 14 chr1 110331802 110333555 -132330798 - L1PB4 LINE L1 -215 5941 4124 540 152 67 73 chr1 110334395 110334560 -132329793 + MER106B DNA MER1_type 896 1059 0 859 249 17 21 chr1 110335242 110335475 -132328878 - MIR SINE MIR -2 260 29 342 337 71 33 chr1 110335447 110335631 -132328722 + MIR3 SINE MIR 14 204 -4 * 414 234 72 0 chr1 110335685 110335796 -132328557 + MIR SINE MIR 82 200 -62 207 0 0 0 chr1 110336385 110336408 -132327945 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2089 123 0 0 chr1 110336416 110336701 -132327652 - AluSx SINE Alu -27 285 1 219 250 0 0 chr1 110337483 110337543 -132326810 + (TA)n Simple_repeat Simple_repeat 2 61 0 770 265 126 25 chr1 110337583 110337821 -132326532 + MIR SINE MIR 1 262 0 310 291 21 71 chr1 110339494 110339635 -132324718 + L1ME4a LINE L1 5891 6024 -97 323 310 31 68 chr1 110339718 110339909 -132324444 - MIR SINE MIR -60 148 10 2147 122 3 22 chr1 110341036 110341348 -132323005 - AluSx SINE Alu -6 306 1 537 326 127 5 chr1 110342070 110342291 -132322062 + MIR SINE MIR 1 248 -14 756 239 17 6 chr1 110343425 110343601 -132320752 - MER5B DNA MER1_type 0 178 1 2164 123 3 0 chr1 110343954 110344263 -132320090 + AluSg SINE Alu 1 310 0 1948 157 3 0 chr1 110345060 110345365 -132318988 + AluJo SINE Alu 7 312 0 299 376 47 22 chr1 110345390 110345752 -132318601 + L1MEc LINE L1 49 419 -5977 317 295 62 42 chr1 110346002 110346402 -132317951 + L1MEc LINE L1 656 1063 -5333 341 161 0 0 chr1 110346659 110346715 -132317638 - MLT1C LTR MaLR 0 467 412 3648 135 8 0 chr1 110346715 110347234 -132317119 + MER1A DNA MER1_type 1 523 -6 1007 133 94 15 chr1 110347233 110347456 -132316897 - MLT1C LTR MaLR -36 421 187 * 2762 126 14 21 chr1 110347555 110347991 -132316362 + Tigger2a DNA MER2_type 1 433 -1 1503 197 42 21 chr1 110348040 110348329 -132316024 - AluJo SINE Alu -15 297 3 189 0 0 0 chr1 110348739 110348760 -132315593 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 628 263 66 13 chr1 110348805 110348955 -132315398 + MER77 LTR ERV1 52 209 -396 2519 133 71 9 chr1 110348955 110349376 -132314977 - LTR44 LTR ERV1 0 519 73 385 270 0 11 chr1 110349406 110349495 -132314858 + MER77 LTR ERV1 510 597 -8 225 236 55 0 chr1 110349493 110349548 -132314805 + MER21A LTR ERV1 682 739 -192 * 252 156 0 22 chr1 110349732 110349777 -132314576 - L2 LINE L2 0 3272 3229 526 191 145 0 chr1 110350022 110350153 -132314200 + MIR SINE MIR 103 252 -10 2201 70 46 0 chr1 110351001 110351285 -132313068 + AluY SINE Alu 1 297 -14 253 169 0 0 chr1 110351325 110351374 -132312979 - MIR SINE MIR -102 106 60 3831 138 21 2 chr1 110351390 110352013 -132312340 + MER41B LTR ERV1 1 635 0 411 382 0 11 chr1 110352034 110352220 -132312133 - MER5A DNA MER1_type -3 186 3 239 175 0 0 chr1 110353167 110353207 -132311146 + MIR3 SINE MIR 121 160 -48 676 258 33 0 chr1 110353243 110353394 -132310959 - MER58A DNA MER1_type 0 159 4 391 277 71 38 chr1 110353555 110353705 -132310648 - MIR SINE MIR -31 231 72 2051 182 20 0 chr1 110353705 110354063 -132310290 - MLT1A1 LTR MaLR 0 365 1 391 277 71 38 chr1 110354063 110354096 -132310257 - MIR SINE MIR -190 72 42 2129 115 0 10 chr1 110354132 110354428 -132309925 - AluSg SINE Alu -17 293 1 2272 154 13 13 chr1 110357500 110357890 -132306463 + MLT1B LTR MaLR 1 390 0 830 220 117 5 chr1 110358211 110358425 -132305928 + MIR SINE MIR 3 240 -22 281 328 17 35 chr1 110358435 110358551 -132305802 + MIR SINE MIR 149 262 0 2110 136 39 121 chr1 110358740 110359204 -132305149 + MSTB LTR MaLR 1 426 0 502 308 58 36 chr1 110359999 110360223 -132304130 + MIR SINE MIR 15 243 -19 297 0 0 0 chr1 110360224 110360257 -132304096 + (GA)n Simple_repeat Simple_repeat 2 34 0 627 232 28 28 chr1 110360321 110360498 -132303855 + MER97c DNA MER1_type? 1 177 -913 226 366 25 47 chr1 110360562 110360797 -132303556 + L2 LINE L2 2820 3049 -223 392 326 177 7 chr1 110361906 110362200 -132302153 + L3 LINE CR1 1230 1573 -4 985 186 87 135 chr1 110362896 110363289 -132301064 - LTR41 LTR ERVL -6 767 394 451 230 29 11 chr1 110363350 110363524 -132300829 - L1MCc LINE L1 -2945 3996 3820 3028 116 23 0 chr1 110363535 110363976 -132300377 + L1PA13 LINE L1 5711 6161 -2 1467 252 107 89 chr1 110364037 110364405 -132299948 - L1MCc LINE L1 -3757 3203 2843 2481 172 18 15 chr1 110364405 110364800 -132299553 + MSTD LTR MaLR 1 396 0 1467 252 107 89 chr1 110364800 110365301 -132299052 - L1MCc LINE L1 -4117 2843 2352 8057 28 6 5 chr1 110365301 110366722 -132297631 - L1PA4 LINE L1 0 6155 4737 1467 252 107 89 chr1 110366722 110367668 -132296685 - L1MCc LINE L1 -4608 2352 1160 2093 155 42 33 chr1 110368528 110368889 -132295464 - THE1B LTR MaLR 0 364 1 619 250 136 26 chr1 110369503 110369775 -132294578 - MLT1J LTR MaLR -146 365 64 503 47 0 255 chr1 110369787 110369839 -132294514 - MADE1 DNA Mariner -1 79 66 2315 107 0 7 chr1 110369839 110370149 -132294204 + AluSq SINE Alu 1 308 -5 503 47 0 255 chr1 110370149 110370202 -132294151 - MADE1 DNA Mariner -14 66 1 28 48 0 0 chr1 110371051 110371093 -132293260 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 110371173 110371194 -132293159 + AT_rich Low_complexity Low_complexity 1 21 0 1912 119 29 7 chr1 110371503 110371813 -132292540 - L1MA5A LINE L1 -3 6294 5978 3526 63 11 5 chr1 110371817 110372262 -132292091 - LTR7 LTR ERV1 -2 448 1 2582 74 45 13 chr1 110372262 110372642 -132291711 - HERVH LTR ERV1 0 7713 7322 1376 133 18 9 chr1 110372640 110372858 -132291495 - HERVH LTR ERV1 -1894 5819 5600 * 4418 140 3 1 chr1 110372862 110373520 -132290833 - HERVH LTR ERV1 -2567 5146 4488 3338 119 4 6 chr1 110373522 110374025 -132290328 - HERVH LTR ERV1 -3720 3993 3492 * 20584 88 64 37 chr1 110374015 110377219 -132287134 - HERVH LTR ERV1 -4423 3290 1 3672 57 0 11 chr1 110377221 110377674 -132286679 - LTR7 LTR ERV1 -2 448 1 239 83 146 21 chr1 110377675 110377715 -132286638 - L1MA6 LINE L1 -322 5978 5930 6030 68 15 298 chr1 110377715 110379611 -132284742 - SVA Other Other 0 1386 27 284 167 0 33 chr1 110379641 110379701 -132284652 + L2 LINE L2 3256 3313 0 256 272 141 0 chr1 110430686 110430778 -132233575 + MIR SINE MIR 156 260 -2 363 349 73 16 chr1 110430866 110431058 -132233295 - MIR SINE MIR -23 239 37 367 245 173 14 chr1 110431240 110431379 -132232974 + L2 LINE L2 3147 3307 -6 915 129 0 0 chr1 110432943 110433075 -132231278 + AluY SINE Alu 1 132 -179 28 0 0 0 chr1 110433075 110433103 -132231250 + AT_rich Low_complexity Low_complexity 1 28 0 1450 71 0 0 chr1 110433109 110433292 -132231061 + AluY SINE Alu 127 309 -2 455 319 17 71 chr1 110433555 110433755 -132230598 + MIR SINE MIR 2 195 -63 413 222 20 0 chr1 110433816 110433915 -132230438 + MLT1K LTR MaLR 487 587 -1 183 247 90 45 chr1 110434491 110434580 -132229773 + MIR3 SINE MIR 5 97 -111 2912 281 91 17 chr1 110434710 110435869 -132228484 + L2 LINE L2 1879 3125 -188 2704 129 64 5 chr1 110436105 110436545 -132227808 - MLT1C LTR MaLR -1 466 1 238 326 222 9 chr1 110436579 110436800 -132227553 + L3 LINE CR1 1300 1567 -10 408 237 58 92 chr1 110437765 110437938 -132226415 + L2 LINE L2 3143 3309 -4 1533 136 52 3 chr1 110438308 110438595 -132225758 - L1MA9 LINE L1 0 6312 6012 22 35 0 0 chr1 110439156 110439185 -132225168 + AT_rich Low_complexity Low_complexity 1 29 0 2212 203 96 36 chr1 110439656 110440179 -132224174 + MLT2B3 LTR ERVL 1 554 0 1691 196 98 23 chr1 110440204 110440681 -132223672 + MLT-int LTR MaLR 923 1492 -243 5272 166 21 94 chr1 110440689 110442089 -132222264 - L1MC3 LINE L1 -508 7695 6397 1073 187 0 10 chr1 110442183 110442392 -132221961 - L1MC3 LINE L1 -2137 6066 5860 * 2002 187 42 38 chr1 110442391 110442968 -132221385 - L1MC3 LINE L1 -4866 1698 1120 234 119 24 0 chr1 110443020 110443062 -132221291 - L1MB1 LINE L1 -50 6118 6076 2446 211 40 8 chr1 110443063 110443661 -132220692 - L1MC3 LINE L1 -4914 1131 515 332 252 107 29 chr1 110444075 110444178 -132220175 + MER81 DNA DNA 3 113 -1 2145 105 0 7 chr1 110446413 110446735 -132217618 + AluSg SINE Alu 1 320 0 26 50 0 0 chr1 110447018 110447058 -132217295 + AT_rich Low_complexity Low_complexity 1 40 0 623 306 77 5 chr1 110447184 110447393 -132216960 - MIR SINE MIR -11 251 28 644 269 6 12 chr1 110448364 110448524 -132215829 - MIR SINE MIR -102 160 2 1621 321 45 11 chr1 110448609 110449322 -132215031 - HERV16 LTR ERVL -1972 3024 2288 366 306 107 0 chr1 110449697 110449870 -132214483 - MIR SINE MIR 0 262 71 242 241 111 19 chr1 110450668 110450830 -132213523 - L1MB1 LINE L1 -218 5903 5727 7015 117 17 11 chr1 110450838 110451961 -132212392 - L1MA3 LINE L1 0 6305 5164 2440 53 0 31 chr1 110451961 110452282 -132212071 - AluY SINE Alu 0 311 1 7015 117 17 11 chr1 110452282 110453234 -132211119 - L1MA3 LINE L1 -1141 5164 4219 227 378 0 12 chr1 110453277 110453359 -132210994 + MIR SINE MIR 26 106 -156 294 247 47 0 chr1 110453509 110453594 -132210759 + MIR SINE MIR 146 234 -28 208 220 34 0 chr1 110453599 110453658 -132210695 + (TTA)n Simple_repeat Simple_repeat 2 62 0 270 279 23 35 chr1 110453825 110453911 -132210442 - L2 LINE L2 -18 3254 3170 1841 221 36 62 chr1 110454599 110455211 -132209142 - L1ME1 LINE L1 -44 6122 5527 297 318 0 0 chr1 110455824 110455909 -132208444 + L2 LINE L2 3184 3268 -4 4434 62 42 0 chr1 110457108 110457907 -132206446 + L1PA7 LINE L1 5071 5895 -259 1459 159 0 0 chr1 110457907 110458127 -132206226 + AluJb SINE Alu 27 246 -66 311 222 0 0 chr1 110458300 110458372 -132205981 + A-rich Low_complexity Low_complexity 1 72 0 2200 108 0 22 chr1 110458876 110459190 -132205163 + AluSx SINE Alu 6 312 0 326 289 48 0 chr1 110459795 110459899 -132204454 + MIR SINE MIR 129 237 -25 694 240 115 10 chr1 110460397 110460589 -132203764 + MIR SINE MIR 51 262 0 23 33 0 0 chr1 110460987 110461017 -132203336 + AT_rich Low_complexity Low_complexity 1 30 0 2330 95 0 0 chr1 110461345 110461651 -132202702 + AluSg SINE Alu 1 306 -4 27 0 0 0 chr1 110461932 110461959 -132202394 + AT_rich Low_complexity Low_complexity 1 27 0 496 208 68 8 chr1 110461996 110462154 -132202199 - L1ME3A LINE L1 -2 6160 5985 875 199 271 27 chr1 110462154 110462590 -132201763 + MLT1E2 LTR MaLR 1 553 -73 1384 211 33 60 chr1 110462605 110462969 -132201384 + MLT1H-int LTR MaLR 298 651 -720 616 300 26 0 chr1 110463075 110463265 -132201088 + MLT1H-int LTR MaLR 696 890 -481 422 288 36 68 chr1 110463316 110463538 -132200815 + MLT1H-int LTR MaLR 875 1089 -282 * 2425 237 52 52 chr1 110463509 110464556 -132199797 - L1MEd LINE L1 -1322 4807 3762 558 283 90 6 chr1 110464545 110464891 -132199462 - L1MEd LINE L1 -2727 3402 3028 * 1170 142 0 6 chr1 110464895 110465071 -132199282 - AluSg/x SINE Alu -18 294 120 396 238 91 0 chr1 110465091 110465234 -132199119 - L1MEd LINE L1 -3136 2993 2838 276 285 54 69 chr1 110465392 110465522 -132198831 - L2 LINE L2 0 3272 3145 229 252 27 81 chr1 110466295 110466406 -132197947 - L2 LINE L2 -50 3263 3159 685 265 61 42 chr1 110466696 110466953 -132197400 - L1MEd LINE L1 -3314 2815 2546 2265 121 0 0 chr1 110466953 110467258 -132197095 - AluSx SINE Alu -7 305 1 685 265 61 42 chr1 110467258 110467407 -132196946 - L1MEd LINE L1 -3583 2546 2401 306 0 0 0 chr1 110467558 110467592 -132196761 + (CA)n Simple_repeat Simple_repeat 2 35 0 2390 82 0 0 chr1 110467661 110467955 -132196398 - AluY SINE Alu -17 294 1 352 290 45 34 chr1 110468142 110468411 -132195942 - L1MEd LINE L1 -4934 1185 914 243 256 154 0 chr1 110469143 110469221 -132195132 + MLT1K LTR MaLR 495 584 -4 320 299 36 15 chr1 110469376 110469513 -132194840 + MIR SINE MIR 68 207 -55 787 246 60 24 chr1 110469750 110469998 -132194355 + LTR16C LTR ERVL 235 491 0 1591 251 82 45 chr1 110472691 110473182 -132191171 + MLT1H LTR MaLR 41 549 0 685 244 0 77 chr1 110473368 110473589 -132190764 - MLT1A1 LTR MaLR 0 365 162 321 135 0 0 chr1 110473589 110473641 -132190712 + (GA)n Simple_repeat Simple_repeat 2 53 0 592 247 65 54 chr1 110473641 110473827 -132190526 - MLT1A1 LTR MaLR -186 188 1 875 320 45 24 chr1 110474540 110474921 -132189432 - L2 LINE L2 -2 3311 2923 217 305 47 62 chr1 110475206 110475334 -132189019 - L2 LINE L2 -2 3311 3186 269 352 104 8 chr1 110475344 110475469 -132188884 + MIR SINE MIR 11 147 -115 * 356 148 9 183 chr1 110475467 110475582 -132188771 - L2 LINE L2 0 3313 3219 386 253 86 110 chr1 110476064 110476447 -132187906 + MLT1J LTR MaLR 156 605 -10 238 294 33 72 chr1 110477768 110477921 -132186432 + MIR SINE MIR 56 202 -60 480 350 48 5 chr1 110478109 110478315 -132186038 + MIR SINE MIR 48 262 0 14529 168 27 7 chr1 110478532 110484025 -132180328 - L1P5 LINE L1 -484 6383 625 1001 179 15 0 chr1 110484019 110484214 -132180139 - L1P5 LINE L1 -6665 198 1 * 255 61 0 0 chr1 110484383 110484416 -132179937 + (TG)n Simple_repeat Simple_repeat 2 34 0 27 29 0 0 chr1 110484608 110484642 -132179711 + AT_rich Low_complexity Low_complexity 1 34 0 271 358 88 34 chr1 110485452 110485984 -132178369 + L2 LINE L2 1803 2440 -874 2863 203 18 11 chr1 110486090 110486648 -132177705 - MER68 LTR ERV1 0 562 1 10976 66 2 1 chr1 110486997 110488880 -132175473 - L1P1 LINE L1 -348 5807 3923 9711 115 1 8 chr1 110491489 110493699 -132170654 + L1PA8A LINE L1 3923 6129 -2 649 58 0 0 chr1 110493738 110493824 -132170529 + L1PA5 LINE L1 6064 6149 -5 707 239 54 0 chr1 110494340 110494507 -132169846 - MER45A DNA AcHobo -2 176 1 432 37 0 0 chr1 110495694 110495748 -132168605 + (CA)n Simple_repeat Simple_repeat 2 55 0 627 173 87 8 chr1 110495764 110495891 -132168462 - MER2 DNA MER2_type -1 344 208 901 168 19 0 chr1 110495957 110496118 -132168235 - MER2 DNA MER2_type -142 203 40 221 250 11 33 chr1 110496124 110496216 -132168137 + (TA)n Simple_repeat Simple_repeat 1 90 0 303 233 22 22 chr1 110496218 110496308 -132168045 + L1MC4 LINE L1 6614 6703 -1339 2352 227 43 52 chr1 110497539 110498289 -132166064 - L1MC4 LINE L1 -131 7911 7169 * 43972 40 2 1 chr1 110498287 110504435 -132159918 + L1PA3 LINE L1 1 6152 -3 1442 205 128 3 chr1 110504453 110504804 -132159549 - L1MC4 LINE L1 -860 7182 6788 410 272 0 40 chr1 110504994 110505119 -132159234 - L1MC4 LINE L1 -1254 6788 6669 476 223 16 125 chr1 110505140 110505324 -132159029 + L2 LINE L2 3108 3271 -42 571 240 93 39 chr1 110505354 110505612 -132158741 + HAL1 LINE L1 2044 2315 -192 188 75 0 50 chr1 110505658 110505698 -132158655 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 329 223 209 29 chr1 110506912 110507051 -132157302 + MIR SINE MIR 89 252 -10 262 305 147 16 chr1 110507224 110507414 -132156939 - L3 LINE CR1 -714 863 649 734 297 138 27 chr1 110508844 110509435 -132154918 - L2 LINE L2 -194 3078 2425 2008 161 50 65 chr1 110510134 110510599 -132153754 - MER31B LTR ERV1 -8 458 1 3471 75 0 0 chr1 110510813 110511251 -132153102 - MLT2A1 LTR ERVL -6 438 1 7689 132 16 24 chr1 110512087 110513367 -132150986 - Tigger1 DNA MER2_type 0 2418 1150 11723 20 9 0 chr1 110513367 110514739 -132149614 - L1HS LINE L1 -972 5174 3790 7955 9 0 0 chr1 110514738 110515721 -132148632 + L1HS LINE L1 5173 6155 0 * 6315 129 26 89 chr1 110515726 110516970 -132147383 - Tigger1 DNA MER2_type -1253 1165 1 34 84 0 0 chr1 110517231 110517314 -132147039 + AT_rich Low_complexity Low_complexity 1 83 0 321 304 28 50 chr1 110517651 110517805 -132146548 + L1ME LINE L1 5641 5792 -370 251 54 27 0 chr1 110517805 110517842 -132146511 + (TATG)n Simple_repeat Simple_repeat 2 39 0 321 304 28 50 chr1 110517842 110517868 -132146485 + L1ME LINE L1 5792 5817 -345 5122 118 32 16 chr1 110517919 110518750 -132145603 - L1MA4A LINE L1 -11 6292 5448 2523 134 7 35 chr1 110518750 110519182 -132145171 - L1M2 LINE L1 -6427 422 3 22 56 0 0 chr1 110519371 110519407 -132144946 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 110519645 110519667 -132144686 + AT_rich Low_complexity Low_complexity 1 22 0 257 333 67 8 chr1 110519781 110519901 -132144452 - L2 LINE L2 -9 3263 3137 193 304 59 10 chr1 110520504 110520606 -132143747 + L2 LINE L2 2633 2739 -575 1480 171 61 39 chr1 110520704 110521067 -132143286 - MER93b LTR ERV1 0 373 3 3945 56 0 0 chr1 110521182 110521667 -132142686 + L1PA7 LINE L1 5669 6153 -1 24 67 0 0 chr1 110521722 110521767 -132142586 + AT_rich Low_complexity Low_complexity 1 45 0 4612 13 0 0 chr1 110522255 110522780 -132141573 - L1PA2 LINE L1 -1 6154 5630 2206 67 11 0 chr1 110522948 110523232 -132141121 + AluY SINE Alu 24 310 -1 1682 111 4 0 chr1 110523887 110524131 -132140222 - L1PA7 LINE L1 -3 6151 5907 963 324 115 24 chr1 110524176 110525074 -132139279 + L2 LINE L2 2275 3251 -21 2052 111 0 11 chr1 110525260 110525540 -132138813 + AluY SINE Alu 3 279 -32 284 48 24 0 chr1 110525541 110525583 -132138770 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2500 27 40 0 chr1 110525765 110526063 -132138290 - AluY SINE Alu -1 310 1 407 337 63 0 chr1 110526063 110526238 -132138115 + MIR SINE MIR 63 248 -14 1606 129 137 0 chr1 110526969 110527232 -132137121 + AluSx SINE Alu 1 299 -3 448 306 95 30 chr1 110527706 110527938 -132136415 - MIR SINE MIR -4 258 12 297 358 125 0 chr1 110528628 110528804 -132135549 - L2 LINE L2 -431 2883 2686 465 19 0 0 chr1 110529188 110529242 -132135111 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 962 8 31 0 chr1 110529359 110529486 -132134867 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 629 167 94 58 chr1 110529486 110529624 -132134729 - MLT2C1 LTR ERVL -62 335 193 955 105 0 184 chr1 110530083 110530322 -132134031 - MLT2D LTR ERVL -219 195 1 249 339 0 0 chr1 110530406 110530471 -132133882 - LTR67 LTR ERVL -394 163 99 225 258 15 0 chr1 110530597 110530663 -132133690 + (CAA)n Simple_repeat Simple_repeat 2 68 0 229 130 0 37 chr1 110530920 110530974 -132133379 + (TC)n Simple_repeat Simple_repeat 1 52 0 1058 219 10 0 chr1 110531099 110531300 -132133053 - MSTD LTR MaLR 0 396 194 1232 178 16 40 chr1 110531307 110531554 -132132799 - MSTD LTR MaLR -155 241 1 671 281 131 21 chr1 110531556 110532168 -132132185 - L1M4 LINE L1 -3068 3078 2400 21 36 0 0 chr1 110533006 110533034 -132131319 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 110533139 110533163 -132131190 + AT_rich Low_complexity Low_complexity 1 24 0 477 145 0 0 chr1 110534103 110534186 -132130167 + L1MA3 LINE L1 6223 6305 0 606 308 88 30 chr1 110534808 110535113 -132129240 + L2 LINE L2 102 424 -2890 1437 199 20 13 chr1 110535152 110535453 -132128900 + MER88 LTR ERVL 79 381 -83 199 350 130 16 chr1 110535525 110535648 -132128705 + L2 LINE L2 410 546 -2768 1987 290 129 24 chr1 110535649 110536581 -132127772 + L2 LINE L2 1697 2726 -588 267 181 83 56 chr1 110536577 110536649 -132127704 + L2 LINE L2 3198 3271 -1 * 307 252 114 46 chr1 110539643 110539763 -132124590 + MIR SINE MIR 65 196 -66 1745 143 49 18 chr1 110539763 110540092 -132124261 + MER44D DNA MER2_type 1 609 0 4362 148 39 5 chr1 110540779 110541574 -132122779 + L1MA6 LINE L1 5469 6290 -10 2161 126 13 0 chr1 110541812 110542114 -132122239 - AluSx SINE Alu -6 306 1 1351 300 54 13 chr1 110543273 110543731 -132120622 + LTR16C LTR ERVL 1 455 -2 404 294 118 55 chr1 110543735 110544272 -132120081 - L2 LINE L2 -80 3233 2660 442 224 282 12 chr1 110544346 110544516 -132119837 + MIR SINE MIR 47 262 0 435 291 40 14 chr1 110544654 110544802 -132119551 + MIR SINE MIR 40 191 -71 1429 177 42 12 chr1 110546288 110546622 -132117731 + Cheshire DNA MER1_type 2062 2405 -15 21 57 0 0 chr1 110546622 110546657 -132117696 + AT_rich Low_complexity Low_complexity 1 35 0 700 275 30 5 chr1 110546957 110547157 -132117196 - MIR SINE MIR -56 206 2 1607 177 11 25 chr1 110547584 110547861 -132116492 + AluJo SINE Alu 1 273 -39 221 167 0 0 chr1 110547861 110547903 -132116450 + A-rich Low_complexity Low_complexity 4 45 0 13934 38 0 1 chr1 110548123 110549837 -132114516 - L1P LINE L1 -3543 2603 892 4123 19 2 3 chr1 110549836 110550476 -132113877 + L1PA4 LINE L1 4907 5546 -609 * 5025 41 0 0 chr1 110550580 110551190 -132113163 + L1PA4 LINE L1 5543 6152 -3 1386 168 42 42 chr1 110551763 110552073 -132112280 + AluJb SINE Alu 1 310 -2 565 232 7 133 chr1 110552145 110552438 -132111915 - L2 LINE L2 0 3313 3058 23 54 0 0 chr1 110553228 110553265 -132111088 + AT_rich Low_complexity Low_complexity 1 37 0 33 0 0 0 chr1 110553413 110553446 -132110907 + AT_rich Low_complexity Low_complexity 1 33 0 2661 107 18 60 chr1 110553469 110553916 -132110437 + MSTC LTR MaLR 1 428 0 731 338 57 15 chr1 110554022 110554499 -132109854 - L1MC4a LINE L1 -1837 5971 5475 21 36 0 0 chr1 110556063 110556091 -132108262 + AT_rich Low_complexity Low_complexity 1 28 0 3319 168 21 80 chr1 110556365 110557090 -132107263 + L1MCa LINE L1 5 686 -5740 1313 213 12 4 chr1 110557102 110557355 -132106998 + MLT1A1 LTR MaLR 109 363 -2 429 270 117 0 chr1 110557642 110557753 -132106600 - L2 LINE L2 -1 3312 3189 190 436 0 0 chr1 110557777 110557878 -132106475 - MIR3 SINE MIR -26 182 82 247 343 67 15 chr1 110558461 110558595 -132105758 + MIR3 SINE MIR 1 141 -67 8812 88 9 10 chr1 110560658 110562684 -132101669 - L1PA7 LINE L1 0 6154 4125 3614 84 10 2 chr1 110562687 110563201 -132101152 + L1P LINE L1 3105 3622 -2524 4158 33 4 0 chr1 110563201 110566326 -132098027 + L1PA4 LINE L1 2933 6150 -5 3575 81 0 0 chr1 110566407 110566890 -132097463 + L1P LINE L1 3606 4088 -2058 382 319 141 25 chr1 110568771 110569091 -132095262 + L1M4 LINE L1 4235 4591 -1555 2286 150 11 5 chr1 110569201 110569568 -132094785 + Tigger2a DNA MER2_type 26 394 -40 2466 41 0 7 chr1 110570915 110571208 -132093145 - AluY SINE Alu -20 291 1 225 0 0 0 chr1 110571634 110571659 -132092694 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr1 110572291 110572320 -132092033 + AT_rich Low_complexity Low_complexity 1 29 0 2121 265 49 35 chr1 110572327 110572369 -132091984 - L1ME3A LINE L1 -52 6118 6078 2111 102 58 22 chr1 110572369 110572731 -132091622 - THE1C LTR MaLR 0 375 1 2121 265 49 35 chr1 110572731 110573461 -132090892 - L1ME3A LINE L1 -92 6078 5335 1331 207 54 54 chr1 110573599 110574045 -132090308 - L1 LINE L1 -3041 3105 2668 354 45 0 0 chr1 110574053 110574097 -132090256 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 1970 120 7 10 chr1 110574099 110574391 -132089962 + AluSg SINE Alu 3 293 -17 520 224 0 8 chr1 110574436 110574561 -132089792 - AluSp/q SINE Alu -12 301 178 931 170 5 53 chr1 110575283 110575489 -132088864 - AluSx SINE Alu -114 198 3 25 0 0 0 chr1 110575491 110575516 -132088837 + AT_rich Low_complexity Low_complexity 1 25 0 2919 99 2 0 chr1 110575516 110575929 -132088424 - L1PA10 LINE L1 -4 6164 5751 521 246 166 0 chr1 110575929 110576116 -132088237 - L1 LINE L1 -3506 2640 2423 310 288 253 6 chr1 110576291 110576461 -132087892 - HAL1 LINE L1 -2030 477 266 22 0 0 0 chr1 110576698 110576720 -132087633 + AT_rich Low_complexity Low_complexity 1 22 0 277 311 44 0 chr1 110578193 110578283 -132086070 + MIR SINE MIR 98 191 -71 28 61 0 0 chr1 110578738 110578787 -132085566 + AT_rich Low_complexity Low_complexity 1 49 0 326 300 39 54 chr1 110579159 110579289 -132085064 - MIR SINE MIR -64 144 17 412 272 168 12 chr1 110579700 110579950 -132084403 + LTR40c LTR ERVL 148 436 -29 207 0 0 0 chr1 110580169 110580192 -132084161 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1552 191 32 0 chr1 110581575 110581857 -132082496 - AluJo SINE Alu -19 293 3 449 298 21 7 chr1 110582000 110582141 -132082212 + L2 LINE L2 1773 1915 -1399 499 275 128 50 chr1 110582144 110582599 -132081754 - HAL1 LINE L1 -333 2174 1685 5534 156 28 32 chr1 110582696 110583651 -132080702 - L1MA7 LINE L1 -1 6290 5330 2000 115 26 26 chr1 110583651 110583963 -132080390 - AluSx SINE Alu 0 312 1 5534 156 28 32 chr1 110583963 110584505 -132079848 - L1MA7 LINE L1 -961 5330 4787 2776 139 45 21 chr1 110584501 110585061 -132079292 + L1MA7 LINE L1 4225 4797 -1349 * 705 291 127 45 chr1 110585108 110585552 -132078801 - HAL1 LINE L1 -823 1684 1278 393 22 0 0 chr1 110585552 110585598 -132078755 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 705 291 127 45 chr1 110585598 110585993 -132078360 - HAL1 LINE L1 -1229 1278 776 493 324 106 67 chr1 110586113 110586743 -132077610 - HAL1 LINE L1 -1837 670 16 261 0 0 0 chr1 110590132 110590161 -132074192 + (CA)n Simple_repeat Simple_repeat 1 29 0 802 280 163 37 chr1 110590601 110591055 -132073298 - L2 LINE L2 -561 2753 2243 535 217 91 14 chr1 110591088 110591231 -132073122 - MIR SINE MIR -2 260 107 180 135 0 0 chr1 110591439 110591476 -132072877 + (T)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr1 110591783 110591804 -132072549 + AT_rich Low_complexity Low_complexity 1 21 0 420 253 98 61 chr1 110592200 110592347 -132072006 + MLT1J LTR MaLR 1 162 -349 451 134 0 24 chr1 110592347 110592429 -132071924 + MADE1 DNA Mariner 1 80 0 420 253 98 61 chr1 110592429 110592526 -132071827 + MLT1J LTR MaLR 162 254 -257 2985 191 7 38 chr1 110592631 110593324 -132071029 - L1MD2 LINE L1 -429 5930 5259 2169 116 7 0 chr1 110593430 110593740 -132070613 - AluSx SINE Alu 0 312 1 197 321 30 22 chr1 110594833 110594933 -132069420 - MIR SINE MIR -12 196 97 1424 231 158 37 chr1 110594948 110595564 -132068789 + HsTC2a DNA Tc2 1 686 -56 27 73 0 0 chr1 110595838 110595893 -132068460 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr1 110597429 110597452 -132066901 + AT_rich Low_complexity Low_complexity 1 23 0 1916 172 29 15 chr1 110600810 110601153 -132063200 - MER7A DNA MER2_type 0 346 1 208 323 75 11 chr1 110601158 110601251 -132063102 - MIR SINE MIR -74 188 90 326 389 49 66 chr1 110602045 110602313 -132062040 + L2 LINE L2 2914 3177 -95 3575 38 0 0 chr1 110602313 110602759 -132061594 + L1PA3 LINE L1 5714 6159 0 326 389 49 66 chr1 110602759 110602854 -132061499 + L2 LINE L2 3177 3272 0 269 236 43 107 chr1 110603066 110603206 -132061147 + MIR SINE MIR 120 250 -12 207 213 21 0 chr1 110603944 110603991 -132060362 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chr1 110604761 110604789 -132059564 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr1 110608321 110608365 -132055988 + AT_rich Low_complexity Low_complexity 1 44 0 836 155 22 115 chr1 110608870 110609096 -132055257 + MER3 DNA MER1_type 5 209 0 267 326 47 93 chr1 110609276 110609491 -132054862 + L2 LINE L2 3029 3233 -39 2166 117 0 0 chr1 110610552 110610852 -132053501 - AluSx SINE Alu -12 300 1 30 0 0 0 chr1 110613291 110613321 -132051032 + AT_rich Low_complexity Low_complexity 1 30 0 8390 154 12 6 chr1 110613338 110615599 -132048754 - L1PA12 LINE L1 -7 6161 3861 21 0 0 0 chr1 110615894 110615915 -132048438 + AT_rich Low_complexity Low_complexity 1 21 0 209 122 0 24 chr1 110616307 110616348 -132048005 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 815 191 0 0 chr1 110616352 110616525 -132047828 - L1MA4 LINE L1 -5 6295 6123 217 128 51 0 chr1 110616586 110616625 -132047728 + (TATG)n Simple_repeat Simple_repeat 1 41 0 5504 82 1 8 chr1 110617611 110618356 -132045997 + L1PA8A LINE L1 5392 6131 0 344 335 100 45 chr1 110618392 110618862 -132045491 + L2 LINE L2 2743 3237 -76 662 201 34 22 chr1 110618988 110619167 -132045186 + MER53 DNA DNA 1 181 -8 180 290 170 30 chr1 110619244 110619344 -132045009 - L2 LINE L2 -37 3235 3122 341 221 188 113 chr1 110619916 110620129 -132044224 - MIR SINE MIR -5 257 29 21 82 0 0 chr1 110620570 110620619 -132043734 + AT_rich Low_complexity Low_complexity 1 49 0 838 87 52 0 chr1 110620687 110620802 -132043551 + AluSg SINE Alu 3 123 -187 2220 97 0 7 chr1 110621287 110621597 -132042756 - AluY SINE Alu -3 308 1 625 279 35 86 chr1 110622111 110622749 -132041604 - L2 LINE L2 0 3313 2619 541 275 0 8 chr1 110622753 110622873 -132041480 - L2 LINE L2 -8 3305 3187 490 353 147 5 chr1 110622878 110623246 -132041107 - L2 LINE L2 -689 2625 2206 357 310 41 14 chr1 110623964 110624109 -132040244 + MIR3 SINE MIR 3 151 -57 451 303 85 13 chr1 110624863 110625093 -132039260 - MIR SINE MIR -9 253 14 646 281 4 100 chr1 110626818 110627088 -132037265 - MIR SINE MIR -10 252 9 8182 131 19 2 chr1 110627394 110628673 -132035680 + HSMAR2 DNA Mariner 2 1302 0 22 35 0 0 chr1 110629808 110629837 -132034516 + AT_rich Low_complexity Low_complexity 1 29 0 300 289 13 0 chr1 110630982 110631058 -132033295 - MIR SINE MIR -61 147 71 242 287 90 16 chr1 110632328 110632450 -132031903 + MIR SINE MIR 76 206 -56 341 208 52 13 chr1 110632870 110632947 -132031406 + MIR SINE MIR 20 99 -109 405 0 0 0 chr1 110633321 110633366 -132030987 + (CA)n Simple_repeat Simple_repeat 1 45 0 366 275 122 26 chr1 110633865 110634054 -132030299 + MIR SINE MIR 1 207 -55 180 152 0 0 chr1 110634092 110634125 -132030228 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1917 143 0 4 chr1 110634940 110635219 -132029134 + AluJb SINE Alu 1 278 -34 432 0 0 0 chr1 110635220 110635268 -132029085 + (CA)n Simple_repeat Simple_repeat 1 48 0 4008 66 4 0 chr1 110635822 110636338 -132028015 + L1PA7 LINE L1 5636 6153 -1 570 332 27 9 chr1 110637188 110637411 -132026942 + MIR SINE MIR 36 262 0 358 298 44 0 chr1 110637783 110637897 -132026456 - MIR SINE MIR -124 138 20 1138 257 189 14 chr1 110641745 110642258 -132022095 + L2 LINE L2 830 1432 -1882 815 261 115 63 chr1 110642283 110642994 -132021359 + L2 LINE L2 2570 3313 0 185 286 41 0 chr1 110643026 110643075 -132021278 + L2 LINE L2 3212 3262 -10 341 404 16 5 chr1 110643825 110644018 -132020335 + MIR SINE MIR 20 214 -48 322 325 60 53 chr1 110644053 110644204 -132020149 - L2 LINE L2 0 3272 3121 476 306 57 22 chr1 110644239 110644468 -132019885 - MIR SINE MIR -24 238 2 3196 68 31 5 chr1 110644570 110645024 -132019329 + L1PA7 LINE L1 5702 6166 0 241 374 40 10 chr1 110645751 110645850 -132018503 + MIR3 SINE MIR 53 154 -54 2325 107 0 0 chr1 110646428 110646727 -132017626 - AluSx SINE Alu -13 299 1 32 43 0 0 chr1 110646737 110646783 -132017570 + AT_rich Low_complexity Low_complexity 1 46 0 238 367 104 24 chr1 110648676 110649052 -132015301 + L2 LINE L2 2550 2955 -359 241 330 0 44 chr1 110649229 110649320 -132015033 + L2 LINE L2 3186 3272 0 2797 3 0 0 chr1 110649875 110650177 -132014176 - AluYa5 SINE Alu -9 302 1 2069 131 7 0 chr1 110650532 110650829 -132013524 + AluSx SINE Alu 1 299 -13 1626 201 23 3 chr1 110650986 110651290 -132013063 - AluJo SINE Alu -2 310 1 338 318 47 64 chr1 110651619 110651915 -132012438 + MLT1K LTR MaLR 143 433 -155 444 145 66 0 chr1 110652917 110652993 -132011360 + LOR1b LTR ERV1 1 81 -380 50 68 0 8 chr1 110652995 110653008 -132011345 + AT_rich Low_complexity Low_complexity 1 13 -103 4612 109 9 6 chr1 110653008 110653704 -132010649 - L1PA14 LINE L1 -3 6158 5461 50 68 0 8 chr1 110653704 110653807 -132010546 + AT_rich Low_complexity Low_complexity 13 116 0 280 105 0 0 chr1 110653807 110653845 -132010508 - L1PA14 LINE L1 -696 5472 5435 256 152 43 0 chr1 110653845 110653891 -132010462 + LOR1a LTR ERV1 64 111 -386 402 39 0 0 chr1 110653891 110653943 -132010410 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1654 184 0 3 chr1 110653972 110654260 -132010093 + LOR1a LTR ERV1 109 395 -102 976 215 45 5 chr1 110654564 110654764 -132009589 + MER58A DNA MER1_type 1 208 -16 24 0 0 0 chr1 110655093 110655117 -132009236 + AT_rich Low_complexity Low_complexity 1 24 0 201 226 0 0 chr1 110655563 110655616 -132008737 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 227 164 55 14 chr1 110656171 110656244 -132008109 + (TA)n Simple_repeat Simple_repeat 2 77 0 302 295 63 37 chr1 110656401 110656672 -132007681 + L1M4 LINE L1 4383 4660 -1486 782 271 92 45 chr1 110656706 110657175 -132007178 - Charlie2b DNA MER1_type -972 1810 1320 336 305 71 7 chr1 110657184 110657325 -132007028 - Charlie2b DNA MER1_type -2538 244 95 252 363 62 39 chr1 110657744 110657923 -132006430 + L2 LINE L2 2589 2771 -543 28 0 0 0 chr1 110658061 110658089 -132006264 + AT_rich Low_complexity Low_complexity 1 28 0 1357 77 6 0 chr1 110658607 110658775 -132005578 - AluSp SINE Alu -116 197 29 990 291 85 46 chr1 110658824 110659136 -132005217 - L1ME LINE L1 -413 5749 5450 2416 84 3 0 chr1 110659136 110659433 -132004920 - AluSp SINE Alu -13 300 3 990 291 85 46 chr1 110659433 110660560 -132003793 - L1ME LINE L1 -712 5450 4243 298 87 0 0 chr1 110660616 110660662 -132003691 - AluSp/q SINE Alu -2 301 256 24 0 0 0 chr1 110661280 110661304 -132003049 + AT_rich Low_complexity Low_complexity 1 24 0 435 266 70 42 chr1 110661318 110661532 -132002821 - MLT1J LTR MaLR -6 505 286 280 351 9 9 chr1 110661777 110661888 -132002465 - L3 LINE CR1 -11 1566 1456 21 36 0 0 chr1 110661973 110662001 -132002352 + AT_rich Low_complexity Low_complexity 1 28 0 614 226 58 32 chr1 110662579 110662769 -132001584 - L2 LINE L2 0 3313 3119 5008 100 22 30 chr1 110662771 110663550 -132000803 + L1PB2 LINE L1 5376 6148 -3 251 162 0 0 chr1 110663565 110663602 -132000751 - MLT1A1 LTR MaLR -92 273 237 622 191 0 0 chr1 110663610 110663720 -132000633 + MLT1A1 LTR MaLR 256 365 0 265 178 0 0 chr1 110664846 110664891 -131999462 - L1ME LINE L1 -446 5675 5631 1538 239 29 29 chr1 110665304 110665685 -131998668 - L1M4b LINE L1 -6468 391 11 183 42 0 0 chr1 110665761 110665785 -131998568 + (TTA)n Simple_repeat Simple_repeat 1 24 0 290 321 141 23 chr1 110665956 110666173 -131998180 - MIR SINE MIR -5 257 17 23 54 0 0 chr1 110666225 110666262 -131998091 + AT_rich Low_complexity Low_complexity 1 37 0 391 315 210 13 chr1 110667623 110667861 -131996492 - L3 LINE CR1 -120 1457 1173 308 269 112 30 chr1 110668023 110668157 -131996196 + MIR SINE MIR 62 206 -56 333 309 83 29 chr1 110668202 110668406 -131995947 - L3 LINE CR1 -624 953 739 194 276 132 0 chr1 110668472 110668548 -131995805 - L2 LINE L2 -1 3312 3227 471 241 22 15 chr1 110668587 110668724 -131995629 - MIR SINE MIR -6 256 119 366 332 143 24 chr1 110669006 110669334 -131995019 - L3 LINE CR1 -939 638 272 216 0 0 0 chr1 110669473 110669497 -131994856 + (A)n Simple_repeat Simple_repeat 1 24 0 464 313 14 7 chr1 110669684 110669831 -131994522 + MIR3 SINE MIR 36 183 -25 303 332 81 40 chr1 110672079 110672302 -131992051 - L1ME4a LINE L1 -57 6064 5833 1735 186 61 6 chr1 110672783 110673127 -131991226 + MLT1A1 LTR MaLR 3 365 0 213 273 30 15 chr1 110673445 110673511 -131990842 + L2 LINE L2 3244 3310 -3 189 301 82 14 chr1 110674156 110674229 -131990124 + L2 LINE L2 3212 3289 -24 198 0 0 0 chr1 110674779 110674801 -131989552 + (CAACT)n Simple_repeat Simple_repeat 5 26 0 23 0 0 0 chr1 110676267 110676290 -131988063 + AT_rich Low_complexity Low_complexity 1 23 0 635 372 18 7 chr1 110676523 110676800 -131987553 + L3 LINE CR1 1297 1576 -1 255 307 22 28 chr1 110676974 110677153 -131987200 + CT-rich Low_complexity Low_complexity 2 179 0 205 184 13 13 chr1 110678146 110678222 -131986131 + (TG)n Simple_repeat Simple_repeat 2 77 0 300 127 0 0 chr1 110678525 110678580 -131985773 + (TG)n Simple_repeat Simple_repeat 2 56 0 1971 196 123 116 chr1 110679846 110680032 -131984321 + LTR1B LTR ERV1 1 184 -642 216 0 0 0 chr1 110680032 110680056 -131984297 + (CA)n Simple_repeat Simple_repeat 1 24 0 1971 196 123 116 chr1 110680056 110680689 -131983664 + LTR1B LTR ERV1 184 826 0 235 232 37 37 chr1 110681394 110681476 -131982877 + MIR SINE MIR 131 212 -50 668 114 0 3 chr1 110681813 110682041 -131982312 + AluSq SINE Alu 1 301 -12 30 27 0 0 chr1 110682901 110682938 -131981415 + AT_rich Low_complexity Low_complexity 1 37 0 4177 180 22 29 chr1 110683538 110683589 -131980764 - L1 LINE L1 -1629 4517 4467 899 179 11 0 chr1 110683589 110683773 -131980580 - L1MA4 LINE L1 -6 6294 6109 4177 180 22 29 chr1 110683773 110684659 -131979694 - L1 LINE L1 -1679 4467 3586 4658 195 30 2 chr1 110684659 110686205 -131978148 + L1MB1 LINE L1 4562 6146 -22 3647 163 21 18 chr1 110686659 110687365 -131976988 - MER67C LTR ERV1 0 710 3 278 262 61 85 chr1 110688804 110688968 -131975385 + L2 LINE L2 3153 3312 -1 22 35 0 0 chr1 110689241 110689270 -131975083 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr1 110689397 110689433 -131974920 + AT_rich Low_complexity Low_complexity 1 36 0 238 282 146 41 chr1 110689909 110690093 -131974260 - MIR SINE MIR -20 242 34 423 310 172 9 chr1 110690112 110690460 -131973893 + L3b LINE CR1 1136 1540 -43 973 142 25 3 chr1 110690643 110690817 -131973536 + MER67D LTR ERV1 1 183 -357 1180 108 39 15 chr1 110690857 110691060 -131973293 + L1MA6 LINE L1 6093 6300 0 6864 4 0 0 chr1 110691065 110691828 -131972525 + L1HS LINE L1 5390 6152 -3 1389 214 22 37 chr1 110691840 110692235 -131972118 + MER67C LTR ERV1 154 507 -7 1331 191 112 16 chr1 110693483 110693787 -131970566 + MLT1F LTR MaLR 210 542 0 320 0 25 0 chr1 110693797 110693837 -131970516 + (TG)n Simple_repeat Simple_repeat 2 42 0 314 329 116 56 chr1 110694038 110694516 -131969837 + L2 LINE L2 2654 3214 -58 1384 210 108 18 chr1 110695106 110695449 -131968904 - MLT1A2 LTR MaLR 0 374 1 262 336 67 0 chr1 110695523 110695657 -131968696 + MIR SINE MIR 59 201 -61 6656 139 33 30 chr1 110695704 110696502 -131967851 + Tigger3b DNA MER2_type 2 807 -2221 2301 92 10 3 chr1 110696502 110696807 -131967546 + AluSc SINE Alu 1 307 -2 6656 139 33 30 chr1 110696807 110697218 -131967135 + Tigger3b DNA MER2_type 807 1215 -16 2252 97 3 3 chr1 110697220 110697529 -131966824 - AluSx SINE Alu -3 309 1 364 230 0 0 chr1 110697690 110697764 -131966589 - MIR SINE MIR -47 215 142 395 163 151 23 chr1 110697764 110697850 -131966503 + MSTD LTR MaLR 1 97 -331 2184 171 20 13 chr1 110697850 110698413 -131965940 - L1PA16 LINE L1 -684 5482 4917 * 2965 138 79 5 chr1 110698410 110698990 -131965363 + L1PA16 LINE L1 5493 6150 -16 560 200 132 38 chr1 110699012 110699236 -131965117 + MSTD LTR MaLR 88 390 -6 323 265 254 15 chr1 110699402 110699678 -131964675 - MLT1K LTR MaLR -13 575 189 1767 247 60 21 chr1 110700009 110700672 -131963681 - L1M4 LINE L1 -999 5147 4459 365 184 10 19 chr1 110700688 110700791 -131963562 + L1MC3 LINE L1 7575 7676 -109 388 262 94 26 chr1 110701105 110701259 -131963094 + MIR SINE MIR 31 192 -66 247 283 0 0 chr1 110701475 110701535 -131962818 - L2 LINE L2 -24 3289 3230 1397 185 42 28 chr1 110701569 110701856 -131962497 - AluJb SINE Alu -20 292 2 1055 249 8 8 chr1 110702038 110702283 -131962070 + MER74A LTR ERVL 232 476 -82 2130 171 31 28 chr1 110702300 110702722 -131961631 - MER74A LTR ERVL -135 423 1 595 316 160 3 chr1 110702734 110703028 -131961325 - LTR16B LTR ERVL -123 341 2 280 381 2 2 chr1 110703033 110703159 -131961194 - MIR SINE MIR -62 146 26 219 36 0 0 chr1 110703664 110703692 -131960661 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1260 253 73 91 chr1 110704022 110704147 -131960206 + MLT1E LTR MaLR 1 127 -466 6775 66 8 5 chr1 110704147 110705335 -131959018 + L1PA6 LINE L1 4964 6154 0 1260 253 73 91 chr1 110705335 110705813 -131958540 + MLT1E LTR MaLR 127 593 0 415 330 85 10 chr1 110706469 110706669 -131957684 + MIR SINE MIR 34 248 -14 21 0 0 0 chr1 110707162 110707183 -131957170 + AT_rich Low_complexity Low_complexity 1 21 0 266 286 11 55 chr1 110707451 110707542 -131956811 + L2 LINE L2 3146 3232 -40 299 298 48 0 chr1 110707975 110708059 -131956294 + L2 LINE L2 3216 3303 -10 6715 126 58 24 chr1 110708142 110708676 -131955677 - Tigger3b DNA MER2_type -1797 1231 716 2286 86 3 0 chr1 110708676 110708966 -131955387 - AluSc SINE Alu -18 291 1 6715 126 58 24 chr1 110708966 110709622 -131954731 - Tigger3b DNA MER2_type -2312 716 1 1354 138 16 77 chr1 110710347 110710658 -131953695 - L1 LINE L1 -1749 4397 4106 275 295 133 19 chr1 110711406 110711511 -131952842 - L2 LINE L2 -5 3267 3151 271 158 53 35 chr1 110711618 110711675 -131952678 - L2 LINE L2 -6 3307 3250 628 310 128 0 chr1 110711760 110711986 -131952367 + MIR SINE MIR 3 257 -5 180 77 0 0 chr1 110712356 110712382 -131951971 + (CA)n Simple_repeat Simple_repeat 1 26 0 2960 106 2 14 chr1 110712382 110712827 -131951526 - L1PA14 LINE L1 -3 6158 5719 716 226 16 26 chr1 110713001 110713191 -131951162 + MER53 DNA DNA 1 188 -1 474 18 0 0 chr1 110713489 110713544 -131950809 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 2065 116 7 0 chr1 110713544 110713829 -131950524 - AluSg SINE Alu 0 310 24 198 354 57 23 chr1 110714784 110714959 -131949394 + L2 LINE L2 1877 2057 -1257 570 281 75 20 chr1 110715000 110715199 -131949154 - MLT1C LTR MaLR 0 467 258 796 142 0 7 chr1 110715202 110715343 -131949010 + MLT2C1 LTR ERVL 4 143 -254 286 271 12 0 chr1 110715555 110715640 -131948713 + L1ME3 LINE L1 4440 4525 -1621 2569 258 65 27 chr1 110715661 110717040 -131947313 + L1ME3 LINE L1 4590 6161 -1 5556 56 6 0 chr1 110717225 110717919 -131946434 - L1PA7 LINE L1 -3 6151 5454 281 75 0 0 chr1 110718224 110718264 -131946089 + L1MA1 LINE L1 6263 6302 0 1502 282 26 12 chr1 110719159 110719581 -131944772 - LTR16A LTR ERVL -5 445 18 297 373 8 8 chr1 110719808 110719934 -131944419 - MER5A DNA MER1_type -5 184 59 2383 102 13 0 chr1 110720833 110721148 -131943205 + THE1B LTR MaLR 1 319 -45 1950 128 7 7 chr1 110721170 110721451 -131942902 + AluSq SINE Alu 1 281 -32 183 42 0 0 chr1 110721452 110721476 -131942877 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2801 237 65 13 chr1 110721482 110722301 -131942052 + L1MD2 LINE L1 5272 6132 -227 2162 91 9 67 chr1 110722643 110723008 -131941345 + AluSx SINE Alu 1 346 0 239 344 43 31 chr1 110723008 110723171 -131941182 - MLT1K LTR MaLR -290 298 134 231 315 27 0 chr1 110723267 110723340 -131941013 + MIR SINE MIR 92 166 -96 23 33 0 0 chr1 110723742 110723772 -131940581 + AT_rich Low_complexity Low_complexity 1 30 0 220 209 58 147 chr1 110723780 110723971 -131940382 - L3b LINE CR1 -287 1296 1123 24 0 0 0 chr1 110724966 110724990 -131939363 + AT_rich Low_complexity Low_complexity 1 24 0 342 265 97 50 chr1 110725115 110725571 -131938782 - L1M4 LINE L1 -2884 3262 2786 192 319 92 35 chr1 110725851 110725992 -131938361 + L2 LINE L2 3165 3313 0 370 302 51 51 chr1 110726014 110726229 -131938124 + L2 LINE L2 2853 3067 -205 220 357 162 13 chr1 110726550 110726704 -131937649 + MIR SINE MIR 10 186 -76 276 309 108 7 chr1 110726988 110727127 -131937226 + MIR SINE MIR 9 161 -101 * 723 219 125 54 chr1 110727116 110727340 -131937013 - MIR SINE MIR 0 262 23 27 29 0 0 chr1 110727465 110727499 -131936854 + AT_rich Low_complexity Low_complexity 1 34 0 214 288 99 27 chr1 110728666 110728777 -131935576 - MIR SINE MIR -107 155 37 296 234 138 0 chr1 110729332 110729426 -131934927 + MIR SINE MIR 99 205 -57 333 47 0 0 chr1 110729476 110729519 -131934834 + (TG)n Simple_repeat Simple_repeat 2 44 0 1103 140 12 6 chr1 110729521 110729692 -131934661 - AluJo SINE Alu -29 283 112 26 30 0 0 chr1 110729700 110729733 -131934620 + AT_rich Low_complexity Low_complexity 1 33 0 235 158 18 18 chr1 110730589 110730646 -131933707 + GA-rich Low_complexity Low_complexity 4 60 0 407 237 110 98 chr1 110730753 110730832 -131933521 - MIR SINE MIR -16 246 169 2198 93 4 0 chr1 110730832 110731141 -131933212 - AluSp SINE Alu 0 315 6 407 237 110 98 chr1 110731141 110731233 -131933120 - MIR SINE MIR -93 169 72 1053 173 7 0 chr1 110732717 110732964 -131931389 + L1PA12 LINE L1 5851 6142 -19 350 259 175 37 chr1 110733510 110733699 -131930654 - MIR SINE MIR -47 215 1 678 292 86 18 chr1 110733795 110734178 -131930175 - MLT1I LTR MaLR 0 409 1 202 256 0 26 chr1 110735000 110735078 -131929275 + A-rich Low_complexity Low_complexity 5 80 0 2133 109 3 3 chr1 110735766 110736060 -131928293 + AluSx SINE Alu 3 296 -16 672 318 113 62 chr1 110736184 110737062 -131927291 + L1M4 LINE L1 4033 4955 -1191 190 256 89 11 chr1 110737106 110737196 -131927157 + L2 LINE L2 2545 2641 -673 387 327 147 0 chr1 110737654 110737810 -131926543 + MER5A DNA MER1_type 11 189 0 23 33 0 0 chr1 110738166 110738196 -131926157 + AT_rich Low_complexity Low_complexity 1 30 0 492 250 119 45 chr1 110739052 110739296 -131925057 - L2 LINE L2 -1 3312 3051 680 245 145 41 chr1 110739468 110739867 -131924486 + L2 LINE L2 2698 3119 -194 804 163 149 0 chr1 110739952 110740093 -131924260 + MSTA LTR MaLR 1 162 -266 2459 96 8 11 chr1 110740094 110740449 -131923904 - THE1A LTR MaLR -1 354 1 9638 108 7 1 chr1 110740450 110741779 -131922574 - THE1A-int LTR MaLR -1 1579 244 1357 144 104 16 chr1 110741806 110742056 -131922297 + MSTA LTR MaLR 157 428 0 443 405 34 5 chr1 110742071 110742342 -131922011 - L2 LINE L2 -312 3001 2724 197 322 26 43 chr1 110742380 110742495 -131921858 - L2 LINE L2 -889 2425 2313 16170 131 18 103 chr1 110742576 110746066 -131918287 + L1PA7 LINE L1 12 3204 -2942 685 44 0 0 chr1 110746066 110746156 -131918197 - AluY SINE Alu -2 310 221 15681 88 10 1 chr1 110746156 110749104 -131915249 + L1PA7 LINE L1 3195 6154 0 191 338 70 21 chr1 110749124 110749266 -131915087 - L2 LINE L2 -16 3297 3149 322 321 133 48 chr1 110749423 110750164 -131914189 - L2 LINE L2 -64 3249 2444 25 0 0 0 chr1 110750340 110750365 -131913988 + AT_rich Low_complexity Low_complexity 1 25 0 447 75 45 0 chr1 110750625 110750692 -131913661 - L1PA11 LINE L1 -1 6173 6104 1165 166 33 0 chr1 110751232 110751443 -131912910 - L1MB5 LINE L1 0 6174 5957 1154 192 25 0 chr1 110751727 110751930 -131912423 + AluJo SINE Alu 3 210 -102 414 0 0 0 chr1 110751957 110752003 -131912350 + (CATA)n Simple_repeat Simple_repeat 1 46 0 532 27 27 0 chr1 110752423 110752497 -131911856 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2227 134 112 25 chr1 110753321 110753715 -131910638 + MSTA LTR MaLR 1 428 0 186 371 86 9 chr1 110754175 110754291 -131910062 + MIR SINE MIR 16 140 -68 1088 323 57 24 chr1 110754328 110754935 -131909418 - L2 LINE L2 -97 3216 2591 21 0 0 0 chr1 110757496 110757517 -131906836 + AT_rich Low_complexity Low_complexity 1 21 0 3192 168 293 110 chr1 110757950 110759018 -131905335 - MER52C LTR ERV1 0 1278 1 23 0 0 0 chr1 110760288 110760311 -131904042 + AT_rich Low_complexity Low_complexity 1 23 0 1159 179 50 54 chr1 110760323 110760563 -131903790 - AluJo SINE Alu -68 244 6 839 216 121 11 chr1 110762601 110762907 -131901446 + MER93b LTR ERV1 1 373 0 401 322 102 0 chr1 110762908 110763026 -131901327 + L2 LINE L2 3139 3268 -4 21 71 0 0 chr1 110763165 110763207 -131901146 + AT_rich Low_complexity Low_complexity 1 42 0 1003 128 6 6 chr1 110763246 110763410 -131900943 + Tigger3(Golem) DNA MER2_type 2617 2780 -249 671 128 0 0 chr1 110763414 110763523 -131900830 - AluSg/x SINE Alu -1 309 201 497 125 0 0 chr1 110763681 110763753 -131900600 + AluY SINE Alu 108 179 -132 2050 86 0 4 chr1 110763753 110764021 -131900332 - AluSg SINE Alu -43 267 1 699 151 32 0 chr1 110764575 110764701 -131899652 - MER34B LTR ERV1 0 565 436 6715 127 43 45 chr1 110764702 110764962 -131899391 - Tigger3b DNA MER2_type -1798 1230 971 2157 120 3 3 chr1 110764962 110765271 -131899082 + AluSx SINE Alu 1 309 -3 6715 127 43 45 chr1 110765271 110765636 -131898717 - Tigger3b DNA MER2_type -2057 971 607 2086 138 3 0 chr1 110765636 110765925 -131898428 - AluSq SINE Alu -23 290 1 6715 127 43 45 chr1 110765925 110766395 -131897958 - Tigger3b DNA MER2_type -2421 607 135 5013 123 22 7 chr1 110766395 110767162 -131897191 - MER4E LTR ERV1 0 779 1 6715 127 43 45 chr1 110767162 110767297 -131897056 - Tigger3b DNA MER2_type -2893 135 1 2707 127 19 7 chr1 110767297 110767720 -131896633 - MER34C LTR ERV1 -128 457 30 2645 201 36 85 chr1 110767861 110768589 -131895764 - LTR8A LTR ERV1 -2 725 34 610 335 8 27 chr1 110768622 110768882 -131895471 - MIR SINE MIR 0 262 8 485 295 51 62 chr1 110769751 110770121 -131894232 - L1MCc LINE L1 -6034 389 24 1904 111 3 54 chr1 110771671 110771995 -131892358 - AluSg SINE Alu 0 309 1 291 201 133 0 chr1 110772261 110772341 -131892012 + MIR SINE MIR 63 154 -68 325 328 17 9 chr1 110774216 110774332 -131890021 + L1MEd LINE L1 1022 1138 -4981 182 36 0 36 chr1 110774351 110774379 -131889974 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 302 274 75 61 chr1 110774379 110774591 -131889762 + HAL1 LINE L1 1234 1448 -1059 1090 204 4 21 chr1 110774623 110774858 -131889495 + L1PA12 LINE L1 1 231 -7350 * 21174 179 11 12 chr1 110774856 110780179 -131884174 + L1PA12 LINE L1 1501 7604 -2 847 174 7 15 chr1 110780281 110780509 -131883844 + AluSc SINE Alu 1 278 -31 1958 127 74 6 chr1 110780598 110780936 -131883417 + THE1B LTR MaLR 4 364 0 291 246 142 8 chr1 110781511 110781645 -131882708 + L1ME4a LINE L1 5969 6120 -1 384 322 137 18 chr1 110782173 110782400 -131881953 + MLT1J LTR MaLR 109 362 -149 2230 148 60 2 chr1 110782689 110783102 -131881251 - LTR23 LTR ERV1 0 437 1 2076 177 48 0 chr1 110784314 110784686 -131879667 - MLT1B LTR MaLR 0 390 1 428 297 80 0 chr1 110784870 110785008 -131879345 - MIR SINE MIR -72 190 42 200 210 0 16 chr1 110785048 110785110 -131879243 + CT-rich Low_complexity Low_complexity 3 63 0 2343 239 48 4 chr1 110785658 110786194 -131878159 - MLT1F1 LTR MaLR -6 561 2 21 82 0 0 chr1 110787533 110787582 -131876771 + AT_rich Low_complexity Low_complexity 1 49 0 40 49 0 0 chr1 110787819 110787880 -131876473 + AT_rich Low_complexity Low_complexity 1 61 0 2552 78 22 11 chr1 110788352 110788711 -131875642 + THE1B LTR MaLR 2 364 0 14344 90 3 8 chr1 110790268 110793093 -131871260 + L1PA7 LINE L1 3324 6142 -12 265 111 83 0 chr1 110793093 110793165 -131871188 + (TA)n Simple_repeat Simple_repeat 1 78 0 298 105 35 49 chr1 110793168 110793311 -131871042 + (TATAA)n Simple_repeat Simple_repeat 1 141 0 21 0 0 0 chr1 110793311 110793332 -131871021 + AT_rich Low_complexity Low_complexity 1 21 0 330 83 60 30 chr1 110793355 110793488 -131870865 + (TA)n Simple_repeat Simple_repeat 2 138 0 21 0 0 0 chr1 110793733 110793754 -131870599 + AT_rich Low_complexity Low_complexity 1 21 0 560 294 43 38 chr1 110795218 110795453 -131868900 - L2 LINE L2 -1 3312 3077 915 305 151 35 chr1 110795690 110796090 -131868263 - HAL1 LINE L1 -163 2344 1992 2025 87 55 6 chr1 110796090 110796401 -131867952 - L1PA10 LINE L1 -2 6166 5841 915 305 151 35 chr1 110796401 110796619 -131867734 - HAL1 LINE L1 -515 1992 1801 1593 206 112 42 chr1 110796619 110797091 -131867262 - MLT1D LTR MaLR 0 505 1 915 305 151 35 chr1 110797091 110797490 -131866863 - HAL1 LINE L1 -706 1801 1208 1720 131 189 19 chr1 110797500 110797866 -131866487 - MSTA LTR MaLR 0 428 1 426 311 86 39 chr1 110797971 110798251 -131866102 - HAL1 LINE L1 -1313 1194 902 564 111 0 0 chr1 110798253 110798334 -131866019 - AluY SINE Alu -16 295 215 11291 180 31 33 chr1 110798334 110800379 -131863974 - L1M1 LINE L1 -5397 2168 128 2206 116 0 7 chr1 110800379 110800680 -131863673 - AluSx SINE Alu -13 299 1 11291 180 31 33 chr1 110800680 110800792 -131863561 - L1M1 LINE L1 -7437 128 17 22 35 0 0 chr1 110801497 110801526 -131862827 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr1 110802484 110802518 -131861835 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7489 32 0 0 chr1 110802519 110803432 -131860921 - L1PA3 LINE L1 -19 6136 5224 675 36 0 0 chr1 110803432 110803516 -131860837 + L1PA3 LINE L1 5168 5251 -895 644 264 60 19 chr1 110804042 110804258 -131860095 + MIR SINE MIR 35 259 -3 21 57 0 0 chr1 110805275 110805310 -131859043 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr1 110805449 110805477 -131858876 + AT_rich Low_complexity Low_complexity 1 28 0 2135 65 4 0 chr1 110805804 110806080 -131858273 - L1PA7 LINE L1 -363 5791 5515 2914 53 3 0 chr1 110806082 110806438 -131857915 + L1PA7 LINE L1 5781 6137 -17 23 33 0 0 chr1 110806439 110806469 -131857884 + AT_rich Low_complexity Low_complexity 1 30 0 616 298 84 0 chr1 110806511 110806773 -131857580 + L1MEc LINE L1 39 322 -6074 210 37 0 0 chr1 110806787 110806814 -131857539 + (GA)n Simple_repeat Simple_repeat 2 28 0 555 303 0 0 chr1 110806814 110806956 -131857397 + L1MEc LINE L1 394 535 -5861 3964 68 2 0 chr1 110806971 110807489 -131856864 - L1PA8 LINE L1 -1 6171 5653 10370 121 5 27 chr1 110807495 110809192 -131855161 + L1P LINE L1 1377 3036 -3110 213 39 0 0 chr1 110809220 110809246 -131855107 + (A)n Simple_repeat Simple_repeat 1 26 0 1404 249 31 37 chr1 110809246 110809888 -131854465 + L1MEc LINE L1 559 1196 -5200 307 309 80 37 chr1 110809902 110810090 -131854263 + L1MEc LINE L1 1208 1403 -4812 311 260 36 6 chr1 110810114 110810253 -131854100 + L1M1 LINE L1 2782 3055 -871 239 259 0 0 chr1 110810276 110810334 -131854019 + L1 LINE L1 4795 4852 -1294 1745 154 22 4 chr1 110810347 110810620 -131853733 - AluSx SINE Alu -34 278 1 315 115 179 0 chr1 110810648 110810719 -131853634 + L1ME LINE L1 5778 5848 -318 308 306 62 42 chr1 110810844 110811037 -131853316 + MER117 DNA MER1_type 1 197 0 2049 171 40 3 chr1 110811091 110811465 -131852888 - MLT1B LTR MaLR -2 388 1 389 275 16 123 chr1 110812063 110812314 -131852039 + LTR67 LTR ERVL 332 555 -2 6216 178 7 8 chr1 110812355 110814402 -131849951 + L1PA13 LINE L1 4130 6160 -3 183 306 230 25 chr1 110814681 110814781 -131849572 + L2 LINE L2 2531 2609 -705 1968 139 60 28 chr1 110814781 110815134 -131849219 - THE1B LTR MaLR 0 364 1 10989 112 9 12 chr1 110815134 110816718 -131847635 - THE1B-int LTR MaLR 0 1580 2 2122 134 73 15 chr1 110816718 110817058 -131847295 - THE1B LTR MaLR -2 362 1 183 306 230 25 chr1 110817058 110817233 -131847120 + L2 LINE L2 2608 2865 -449 974 84 0 7 chr1 110817239 110817382 -131846971 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 669 159 0 9 chr1 110817393 110817500 -131846853 - FLAM_C SINE Alu -35 108 3 2220 136 105 5 chr1 110817500 110817889 -131846464 - MSTA LTR MaLR 0 428 1 1094 303 69 23 chr1 110817897 110818330 -131846023 + L2 LINE L2 2828 3280 -33 25 0 0 0 chr1 110818571 110818596 -131845757 + AT_rich Low_complexity Low_complexity 1 25 0 225 213 0 0 chr1 110819103 110819150 -131845203 + MIR SINE MIR 112 158 -104 183 42 0 0 chr1 110819829 110819853 -131844500 + (CA)n Simple_repeat Simple_repeat 1 24 0 218 296 0 42 chr1 110819907 110819978 -131844375 + L2 LINE L2 3161 3228 -44 226 284 108 0 chr1 110820042 110820116 -131844237 - L2 LINE L2 -35 3278 3197 752 160 77 0 chr1 110820206 110820362 -131843991 - L1MC2 LINE L1 0 6344 6177 1083 120 0 7 chr1 110821257 110821407 -131842946 + AluJo SINE Alu 1 149 -163 944 120 0 0 chr1 110821529 110821662 -131842691 + AluJb SINE Alu 163 295 -17 315 0 0 0 chr1 110822757 110822792 -131841561 + (TG)n Simple_repeat Simple_repeat 2 36 0 5159 126 61 5 chr1 110823263 110824319 -131840034 + L1PA15 LINE L1 5057 6165 0 225 176 29 15 chr1 110825271 110825339 -131839014 + (TA)n Simple_repeat Simple_repeat 2 70 0 5678 115 9 0 chr1 110825339 110826505 -131837848 - L1PA16 LINE L1 -7 6159 4975 296 250 65 56 chr1 110826740 110826848 -131837505 - MIR SINE MIR -60 148 40 233 387 0 0 chr1 110827219 110827281 -131837072 - MIR SINE MIR -190 72 11 503 344 57 9 chr1 110827402 110827614 -131836739 + MIR SINE MIR 41 262 0 703 155 9 0 chr1 110827707 110827823 -131836530 - FLAM_A SINE Alu -16 126 10 286 263 115 67 chr1 110827914 110828123 -131836230 + L2 LINE L2 2839 3057 -215 442 273 16 16 chr1 110828171 110828292 -131836061 - MIR SINE MIR -18 244 124 188 375 89 9 chr1 110828409 110828521 -131835832 + L2 LINE L2 3137 3257 -15 33 0 0 0 chr1 110828697 110828730 -131835623 + AT_rich Low_complexity Low_complexity 1 33 0 1757 138 85 25 chr1 110829498 110829852 -131834501 + THE1C LTR MaLR 1 375 0 791 259 31 35 chr1 110829852 110829951 -131834402 - MIR SINE MIR -4 258 160 1928 226 10 5 chr1 110829951 110830345 -131834008 - MSTD LTR MaLR 0 396 1 791 259 31 35 chr1 110830345 110830500 -131833853 - MIR SINE MIR -102 160 5 255 250 36 0 chr1 110833222 110833278 -131831075 + L2 LINE L2 264 321 -2993 1063 188 90 4 chr1 110833409 110833643 -131830710 + L2 LINE L2 2554 2807 -507 241 373 108 0 chr1 110833857 110833959 -131830394 + L2 LINE L2 3149 3261 -11 211 245 20 0 chr1 110834679 110834728 -131829625 - L2 LINE L2 0 3313 3264 848 231 92 25 chr1 110835562 110835800 -131828553 - MIR SINE MIR 0 262 9 3001 164 236 70 chr1 110836074 110836971 -131827382 - THE1B-int LTR MaLR -603 1048 3 2371 130 3 16 chr1 110836973 110837342 -131827011 - THE1B LTR MaLR 0 364 1 816 188 217 0 chr1 110837343 110837550 -131826803 + LTR64 LTR ERVK 307 558 0 564 319 85 19 chr1 110837560 110837830 -131826523 - L2 LINE L2 -65 3248 2961 1746 167 46 0 chr1 110837900 110838224 -131826129 - MER44D DNA MER2_type 0 609 1 261 98 24 0 chr1 110838247 110838288 -131826065 - MLT1G LTR MaLR -6 584 543 2029 120 86 29 chr1 110838501 110838850 -131825503 - MSTA LTR MaLR -48 380 12 1932 124 7 4 chr1 110838963 110839238 -131825115 + AluSx SINE Alu 21 296 -16 248 295 121 26 chr1 110839243 110839548 -131824805 - L1M4 LINE L1 -1316 4830 4497 2274 92 3 3 chr1 110839572 110839864 -131824489 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr1 110839968 110839992 -131824361 + AT_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr1 110840077 110840122 -131824231 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr1 110840377 110840400 -131823953 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 366 23 0 0 chr1 110840688 110840731 -131823622 + (CA)n Simple_repeat Simple_repeat 2 44 0 793 320 129 30 chr1 110840992 110841722 -131822631 - L2 LINE L2 0 3272 2456 253 346 29 26 chr1 110841879 110842007 -131822346 - MIR SINE MIR -75 133 2 206 116 23 0 chr1 110842054 110842097 -131822256 + (CA)n Simple_repeat Simple_repeat 2 45 0 5164 137 34 43 chr1 110842468 110843553 -131820800 - L1MA5 LINE L1 -6 6294 5222 1806 142 35 20 chr1 110843549 110843944 -131820409 - L1MA5 LINE L1 -1498 4648 4248 * 486 279 9 30 chr1 110844794 110844999 -131819354 + MIR SINE MIR 30 228 -34 632 241 82 49 chr1 110845133 110845378 -131818975 + L2 LINE L2 3061 3313 0 198 103 0 0 chr1 110845893 110845922 -131818431 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 199 255 20 0 chr1 110846466 110846517 -131817836 + L2 LINE L2 3261 3312 -1 193 407 12 24 chr1 110846853 110847020 -131817333 - L2 LINE L2 -173 3099 2935 194 316 118 7 chr1 110847912 110848048 -131816305 - L2 LINE L2 -5 3308 3158 307 191 298 0 chr1 110848066 110848150 -131816203 - L2 LINE L2 -13 3300 3192 811 278 44 52 chr1 110848780 110849028 -131815325 + MIR SINE MIR 13 258 -4 290 289 144 0 chr1 110850270 110850360 -131813993 + MIR SINE MIR 24 126 -136 1786 177 0 40 chr1 110850676 110850998 -131813355 - AluJo SINE Alu -3 309 1 567 272 103 49 chr1 110851032 110851256 -131813097 + MIR SINE MIR 2 237 -25 294 118 78 0 chr1 110851257 110851308 -131813045 - MLT2A1 LTR ERVL 0 444 390 243 0 0 0 chr1 110851326 110851353 -131813000 + (TG)n Simple_repeat Simple_repeat 2 28 0 2843 98 23 2 chr1 110851363 110851759 -131812594 - MLT2A1 LTR ERVL -40 404 1 3099 95 7 32 chr1 110851759 110852221 -131812132 - HERVL-A1 LTR ERVL 0 5654 5205 7389 43 4 14 chr1 110852221 110853134 -131811219 - MER11C LTR ERVK 0 1071 168 10985 176 35 11 chr1 110853234 110855926 -131808427 - L1M1 LINE L1 -4118 3447 9 8191 178 19 8 chr1 110855924 110857913 -131806440 - L1M1 LINE L1 -616 5684 3671 * 3627 130 21 22 chr1 110858014 110858591 -131805762 - MER57B-int LTR ERV1 -3204 2742 2167 764 109 17 0 chr1 110858587 110858706 -131805647 - MER57B-int LTR ERV1 -3929 2017 1897 * 5491 132 47 8 chr1 110858708 110859584 -131804769 - MER57B-int LTR ERV1 -5187 2350 1441 3459 104 7 60 chr1 110859584 110859975 -131804378 - MER57B-int LTR ERV1 -6790 747 392 2118 92 0 10 chr1 110859975 110860268 -131804085 - AluY SINE Alu -21 290 1 3459 104 7 60 chr1 110860268 110860425 -131803928 - MER57B-int LTR ERV1 -7145 392 228 2350 150 11 0 chr1 110860425 110860798 -131803555 - MER57B LTR ERV1 -57 377 1 180 0 0 0 chr1 110860817 110860837 -131803516 + (A)n Simple_repeat Simple_repeat 1 20 0 200 188 42 0 chr1 110861613 110861661 -131802692 + A-rich Low_complexity Low_complexity 4 53 0 21 36 0 0 chr1 110861676 110861704 -131802649 + AT_rich Low_complexity Low_complexity 1 28 0 347 333 59 27 chr1 110862020 110862206 -131802147 + MIR SINE MIR 34 225 -37 1743 156 66 0 chr1 110862767 110863055 -131801298 + AluSx SINE Alu 1 307 -5 569 91 0 13 chr1 110863069 110863146 -131801207 + AluJ/FLAM SINE Alu 7 82 -230 186 43 0 0 chr1 110863273 110863296 -131801057 + (T)n Simple_repeat Simple_repeat 1 23 0 693 327 64 50 chr1 110863599 110864101 -131800252 - L1M3b LINE L1 -5772 509 1 203 321 53 48 chr1 110864355 110864542 -131799811 + L2 LINE L2 1889 2076 -1238 2333 80 3 25 chr1 110864548 110864862 -131799491 - AluSx SINE Alu -5 307 1 209 383 53 21 chr1 110865015 110865203 -131799150 + L2 LINE L2 2311 2504 -810 1829 220 88 57 chr1 110865488 110866969 -131797384 + MER31-int LTR ERV1 833 2250 -2686 329 176 14 14 chr1 110867100 110867174 -131797179 + MER31-int LTR ERV1 2419 2492 -2444 428 238 71 0 chr1 110867277 110867403 -131796950 + AluJo SINE Alu 7 141 -171 22 35 0 0 chr1 110868054 110868083 -131796270 + AT_rich Low_complexity Low_complexity 1 29 0 181 115 0 0 chr1 110868771 110868797 -131795556 - MIR SINE MIR -1 261 236 247 105 0 0 chr1 110868799 110868837 -131795516 + MLT2A2 LTR ERVL 1 38 -415 1315 113 0 78 chr1 110868839 110869069 -131795284 - MLT2A2 LTR ERVL -184 269 58 219 36 0 0 chr1 110869069 110869097 -131795256 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr1 110869099 110869120 -131795233 + (CA)n Simple_repeat Simple_repeat 2 22 0 325 161 0 0 chr1 110869139 110869195 -131795158 + MLT2A2 LTR ERVL 398 453 0 16910 80 13 1 chr1 110869195 110871396 -131792957 + HERVL-A2 LTR ERVL 1 2228 -3426 623 216 16 22 chr1 110871500 110871685 -131792668 - L1MC1 LINE L1 -127 6206 6023 305 100 20 0 chr1 110872001 110872051 -131792302 + (TTC)n Simple_repeat Simple_repeat 3 53 0 233 378 0 0 chr1 110872341 110872423 -131791930 - MIR3 SINE MIR -36 172 91 23 54 0 0 chr1 110873306 110873343 -131791010 + AT_rich Low_complexity Low_complexity 1 37 0 198 301 14 0 chr1 110873365 110873438 -131790915 + MIR SINE MIR 176 249 -13 417 153 0 0 chr1 110873651 110873723 -131790630 + GA-rich Low_complexity Low_complexity 1 72 0 242 315 127 53 chr1 110873776 110874055 -131790298 + L2 LINE L2 2742 3033 -239 4741 180 29 17 chr1 110874421 110875384 -131788969 - L1MD1 LINE L1 0 6242 5268 1093 285 15 7 chr1 110875464 110875875 -131788478 - L1MD1 LINE L1 -883 5263 4850 1852 194 57 0 chr1 110875881 110876248 -131788105 + MSTD LTR MaLR 1 388 -8 1719 271 11 9 chr1 110876258 110876782 -131787571 - L1MD1 LINE L1 -1300 4846 4322 807 199 60 5 chr1 110876771 110876972 -131787381 + L1 LINE L1 4155 4366 -1780 * 1564 202 8 0 chr1 110876982 110877338 -131787015 + SVA Other Other 1 359 -1027 1356 211 70 0 chr1 110877438 110877736 -131786617 + MSTD LTR MaLR 70 388 -8 1719 271 11 9 chr1 110877746 110878270 -131786083 - L1M4 LINE L1 -1300 4846 4322 * 2475 189 37 43 chr1 110878259 110878465 -131785888 + L1 LINE L1 4155 4361 -1785 530 14 0 42 chr1 110878465 110878537 -131785816 + (TCTCCC)n Simple_repeat Simple_repeat 4 72 0 6723 82 28 46 chr1 110878537 110878862 -131785491 + SVA Other Other 71 1386 -991 6723 91 36 60 chr1 110878862 110880004 -131784349 + SVA Other Other 272 1386 0 2475 189 37 43 chr1 110880004 110880446 -131783907 + L1 LINE L1 4359 4801 -1345 896 273 60 25 chr1 110880575 110880941 -131783412 - L1MDa LINE L1 -6142 398 20 207 176 0 0 chr1 110881145 110881179 -131783174 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 427 338 130 38 chr1 110881262 110881661 -131782692 + L2 LINE L2 2420 2855 -459 1009 312 70 47 chr1 110881827 110882049 -131782304 - L2 LINE L2 -1 3312 3097 378 61 0 0 chr1 110882049 110882098 -131782255 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 1009 312 70 47 chr1 110882098 110882620 -131781733 - L2 LINE L2 -216 3097 2564 516 92 9 55 chr1 110882820 110882929 -131781424 - SVA Other Other -823 563 460 289 197 94 128 chr1 110882933 110883167 -131781186 - L1ME3A LINE L1 -183 5987 5762 1420 234 105 37 chr1 110883167 110883681 -131780672 + MER34C LTR ERV1 37 585 0 946 236 164 7 chr1 110883681 110883956 -131780397 - L1ME3A LINE L1 -407 5763 5446 2422 65 0 16 chr1 110884905 110885213 -131779140 + AluY SINE Alu 2 304 -7 240 281 0 0 chr1 110888979 110889043 -131775310 - MIR SINE MIR -2 260 197 229 287 79 54 chr1 110889730 110889995 -131774358 - L1ME4a LINE L1 -9 6112 5830 2253 107 3 0 chr1 110889995 110890303 -131774050 + AluSq SINE Alu 5 313 0 229 287 79 54 chr1 110890303 110890480 -131773873 - L1ME4a LINE L1 -291 5830 5659 398 294 29 0 chr1 110891368 110891470 -131772883 - L2 LINE L2 -2 3311 3207 819 172 0 22 chr1 110893518 110893652 -131770701 - FLAM_C SINE Alu 0 133 3 318 270 127 16 chr1 110894199 110894325 -131770028 - L3 LINE CR1 -1 1576 1437 633 277 72 40 chr1 110894674 110894923 -131769430 + MLT1J LTR MaLR 83 339 -172 279 54 0 0 chr1 110894980 110895017 -131769336 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 318 308 199 26 chr1 110895153 110895419 -131768934 + L1 LINE L1 2666 2977 -3169 1631 217 74 90 chr1 110895422 110896192 -131768161 + L1MC5 LINE L1 6685 7442 -519 229 253 0 25 chr1 110896202 110896281 -131768072 + L1MC5 LINE L1 7386 7462 -499 260 161 16 0 chr1 110896292 110896354 -131767999 + GA-rich Low_complexity Low_complexity 1 63 0 356 240 69 46 chr1 110896407 110896582 -131767771 + L1MC5 LINE L1 7738 7916 -45 195 377 35 0 chr1 110897663 110897777 -131766576 + MIR SINE MIR 81 198 -64 652 203 17 0 chr1 110898440 110898558 -131765795 + FLAM_A SINE Alu 1 120 -13 1813 296 77 10 chr1 110899282 110899981 -131764372 + L2 LINE L2 1086 1831 -1483 295 248 128 8 chr1 110900118 110900235 -131764118 - MIR SINE MIR -34 228 98 640 305 99 63 chr1 110901010 110901486 -131762867 + L2 LINE L2 2363 2855 -459 934 308 52 6 chr1 110901523 110901871 -131762482 + L2 LINE L2 2950 3313 0 671 326 70 0 chr1 110902736 110902963 -131761390 - MIR SINE MIR -18 244 2 235 284 15 0 chr1 110903102 110903169 -131761184 + MIR SINE MIR 183 250 -12 231 339 27 9 chr1 110903620 110903732 -131760621 - MIR SINE MIR -109 153 40 206 360 90 17 chr1 110903816 110903994 -131760359 - L2 LINE L2 -215 3057 2867 1006 330 26 50 chr1 110905302 110905927 -131758426 + L1PA13 LINE L1 788 1397 -6177 327 265 20 10 chr1 110906054 110906152 -131758201 + L1PA13 LINE L1 2084 2182 -5399 452 133 0 40 chr1 110906563 110906638 -131757715 - MSTA LTR MaLR -354 74 3 2955 139 15 29 chr1 110906640 110907159 -131757194 + L1PA16 LINE L1 5646 6157 -9 912 145 18 44 chr1 110907462 110907633 -131756720 + L1PA16 LINE L1 5815 6002 -152 347 239 130 36 chr1 110908402 110908540 -131755813 + L2 LINE L2 3163 3313 0 265 349 0 0 chr1 110908750 110908833 -131755520 + L2 LINE L2 3190 3272 0 1968 139 0 14 chr1 110909525 110909820 -131754533 + AluSx SINE Alu 1 291 -21 250 176 0 135 chr1 110910642 110910666 -131753687 + L2 LINE L2 3250 3276 -37 1734 187 33 0 chr1 110910666 110910998 -131753355 - MER2 DNA MER2_type 0 344 2 250 176 0 135 chr1 110910998 110911030 -131753323 + L2 LINE L2 3276 3296 -17 2018 118 50 0 chr1 110911030 110911309 -131753044 + AluSg SINE Alu 1 293 -17 250 176 0 135 chr1 110911309 110911325 -131753028 + L2 LINE L2 3296 3313 0 221 241 0 0 chr1 110911461 110911519 -131752834 + (TTCA)n Simple_repeat Simple_repeat 4 61 0 23 0 0 0 chr1 110911898 110911921 -131752432 + AT_rich Low_complexity Low_complexity 1 23 0 27280 120 24 40 chr1 110911921 110912971 -131751382 - L1PA8 LINE L1 -2 6444 5378 1956 134 41 0 chr1 110912971 110913263 -131751090 - AluSg1 SINE Alu -5 304 1 27280 120 24 40 chr1 110913263 110914809 -131749544 - L1PA8 LINE L1 -1068 5378 3808 765 170 14 7 chr1 110914809 110914956 -131749397 - LTR5 LTR ERVK 0 969 822 27280 120 24 40 chr1 110914956 110918712 -131745641 - L1PA8 LINE L1 -2638 3808 3 550 305 35 27 chr1 110919082 110919338 -131745015 - MIR SINE MIR -2 260 3 199 412 70 0 chr1 110919587 110919701 -131744652 - MIR SINE MIR -67 141 20 4897 160 60 24 chr1 110919815 110919966 -131744387 - L1MA9 LINE L1 0 6200 6056 2207 135 28 25 chr1 110919966 110920329 -131744024 + THE1B LTR MaLR 1 364 0 11072 104 16 3 chr1 110920329 110921889 -131742464 + THE1B-int LTR MaLR 1 1580 0 2053 157 28 25 chr1 110921889 110922252 -131742101 + THE1B LTR MaLR 1 364 0 4897 160 60 24 chr1 110922252 110923640 -131740713 - L1MA9 LINE L1 -143 6057 4592 3164 176 18 5 chr1 110923653 110924257 -131740096 - L1MA9 LINE L1 -1785 4249 3638 1912 224 44 8 chr1 110924255 110924874 -131739479 - L1MA9 LINE L1 -4609 1356 712 * 549 294 130 28 chr1 110924934 110925295 -131739058 - L1MA9 LINE L1 -5210 745 348 625 271 7 7 chr1 110925404 110925544 -131738809 + MIR SINE MIR 12 151 -111 1299 164 86 71 chr1 110925562 110925648 -131738705 + L1MA8 LINE L1 5923 6006 -285 2385 94 120 8 chr1 110925648 110926031 -131738322 - MSTA LTR MaLR -2 426 1 1299 164 86 71 chr1 110926031 110926274 -131738079 + L1MA8 LINE L1 6006 6261 -30 1637 65 5 5 chr1 110926274 110926501 -131737852 - AluY SINE Alu 0 307 81 1299 164 86 71 chr1 110926501 110926529 -131737824 + L1MA8 LINE L1 6261 6287 -4 1602 213 73 23 chr1 110926613 110927054 -131737299 - MLT1C LTR MaLR -4 463 1 510 205 9 18 chr1 110927141 110927253 -131737100 - MLT1C LTR MaLR -356 111 1 603 345 73 4 chr1 110927610 110927842 -131736511 - MIR SINE MIR 0 262 15 345 65 0 0 chr1 110927845 110927891 -131736462 - U5 snRNA snRNA -70 46 1 633 359 40 28 chr1 110928233 110928704 -131735649 - L2 LINE L2 -576 2738 2262 * 1034 276 44 92 chr1 110928701 110929435 -131734918 + L2 LINE L2 2609 3313 0 489 274 224 0 chr1 110929449 110929628 -131734725 - L2 LINE L2 0 3313 3095 454 354 85 28 chr1 110929708 110930061 -131734292 - L2 LINE L2 -1192 2122 1750 186 103 0 0 chr1 110930169 110930198 -131734155 + (TC)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr1 110930198 110930227 -131734126 + (CA)n Simple_repeat Simple_repeat 1 29 0 439 301 52 7 chr1 110930548 110930684 -131733669 - MIR3 SINE MIR -64 144 3 241 232 61 12 chr1 110930921 110931003 -131733350 + L1MC5 LINE L1 5255 5340 -2468 763 249 124 0 chr1 110931017 110931210 -131733143 - MLT1F1 LTR MaLR 0 567 351 3008 39 13 0 chr1 110931369 110931757 -131732596 - L1PA4 LINE L1 -743 5403 5011 6036 35 4 9 chr1 110931757 110932498 -131731855 + L1PA4 LINE L1 5419 6155 0 357 156 13 0 chr1 110932516 110932593 -131731760 + Charlie2 DNA MER1_type 2079 2156 -706 857 236 42 85 chr1 110932874 110933318 -131731035 + L1MC5 LINE L1 6536 6939 -869 274 184 19 63 chr1 110933329 110933487 -131730866 + (TATAA)n Simple_repeat Simple_repeat 3 153 0 1323 237 79 86 chr1 110933491 110933965 -131730388 + L1MC5 LINE L1 6971 7436 -525 1591 162 0 60 chr1 110933965 110934267 -131730086 - AluJb SINE Alu -8 304 21 1323 237 79 86 chr1 110934267 110934742 -131729611 + L1MC5 LINE L1 7436 7913 -48 2225 204 14 7 chr1 110934774 110935191 -131729162 - MSTB LTR MaLR -1 425 6 933 192 0 30 chr1 110936241 110936408 -131727945 - AluJo SINE Alu -150 162 1 337 333 78 85 chr1 110937140 110937717 -131726636 - L2 LINE L2 0 3272 2685 411 281 132 21 chr1 110938507 110938749 -131725604 - L1ME LINE L1 -301 5820 5552 797 214 12 6 chr1 110939083 110939256 -131725097 - MER5B DNA MER1_type 0 178 5 1056 283 79 9 chr1 110941368 110941721 -131722632 - L1ME1 LINE L1 -50 6116 5742 319 306 186 11 chr1 110941793 110941976 -131722377 + MIR SINE MIR 37 251 -11 259 139 0 0 chr1 110942998 110943041 -131721312 + MER116 DNA Mariner 38 80 0 1262 230 49 41 chr1 110943142 110943529 -131720824 + MLT1B LTR MaLR 1 390 0 1790 167 6 13 chr1 110944122 110944434 -131719919 - AluJo SINE Alu -2 310 1 283 318 81 40 chr1 110944644 110944792 -131719561 + MIR3 SINE MIR 32 185 -23 33 29 0 29 chr1 110945134 110945163 -131719190 + AT_rich Low_complexity Low_complexity 1 29 -38 2032 106 3 36 chr1 110945163 110945465 -131718888 + AluSq SINE Alu 1 292 -21 33 29 0 29 chr1 110945465 110945485 -131718868 + AT_rich Low_complexity Low_complexity 29 50 -17 1621 193 7 3 chr1 110945485 110945770 -131718583 + AluJo SINE Alu 1 286 -26 33 29 0 29 chr1 110945770 110945788 -131718565 + AT_rich Low_complexity Low_complexity 50 67 0 236 313 87 27 chr1 110947188 110947338 -131717015 - MIR SINE MIR -96 166 8 322 168 31 0 chr1 110947702 110947773 -131716580 - MIR SINE MIR -54 154 81 21 0 0 0 chr1 110947889 110947910 -131716443 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 110948779 110948802 -131715551 + (TTG)n Simple_repeat Simple_repeat 2 24 0 289 312 136 7 chr1 110950246 110950400 -131713953 - MIR SINE MIR -10 252 79 685 253 103 5 chr1 110950838 110951032 -131713321 - MIR SINE MIR -31 231 19 359 245 29 49 chr1 110951168 110951270 -131713083 - L2 LINE L2 -1 3312 3213 326 305 91 101 chr1 110952859 110953261 -131711092 + L1M2 LINE L1 536 879 -5970 192 77 0 0 chr1 110953261 110953287 -131711066 + (CTCGG)n Simple_repeat Simple_repeat 1 26 0 326 305 91 101 chr1 110953287 110953609 -131710744 + L1M2 LINE L1 879 1203 -5646 24 32 0 0 chr1 110954367 110954398 -131709955 + AT_rich Low_complexity Low_complexity 1 31 0 372 43 0 0 chr1 110954868 110954914 -131709439 + (TA)n Simple_repeat Simple_repeat 1 46 0 344 342 35 10 chr1 110955923 110956125 -131708228 - MIR SINE MIR 0 262 56 306 0 0 0 chr1 110956262 110956296 -131708057 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 57 0 0 chr1 110956403 110956438 -131707915 + AT_rich Low_complexity Low_complexity 1 35 0 2365 86 0 3 chr1 110956533 110956834 -131707519 + AluY SINE Alu 1 300 -11 271 259 0 0 chr1 110956847 110956905 -131707448 + MIR SINE MIR 75 132 -130 188 365 26 77 chr1 110957022 110957178 -131707175 - L2 LINE L2 -8 3264 3117 202 250 0 0 chr1 110957198 110957242 -131707111 + (TA)n Simple_repeat Simple_repeat 1 44 0 310 272 0 25 chr1 110958370 110958451 -131705902 + MIR SINE MIR 20 98 -164 791 238 65 9 chr1 110958501 110958715 -131705638 + MIR SINE MIR 2 227 -35 205 314 12 93 chr1 110958988 110959160 -131705193 - MIR SINE MIR 0 262 105 191 309 95 0 chr1 110959147 110959231 -131705122 - MIR SINE MIR -14 248 157 * 282 326 11 0 chr1 110959809 110959901 -131704452 + CT-rich Low_complexity Low_complexity 2 94 0 195 253 72 0 chr1 110960052 110960135 -131704218 + MIR SINE MIR 108 196 -66 205 244 137 23 chr1 110960710 110960841 -131703512 + MIR SINE MIR 117 262 0 232 301 174 19 chr1 110960903 110961048 -131703305 - MIR SINE MIR -43 165 7 203 167 0 24 chr1 110961667 110961709 -131702644 + (TG)n Simple_repeat Simple_repeat 2 42 0 1503 117 9 5 chr1 110962492 110962715 -131701638 - L1PA15 LINE L1 -7 6158 5935 2765 102 8 0 chr1 110962716 110963107 -131701246 - L1PA15 LINE L1 -425 5740 5347 193 203 0 43 chr1 110963710 110963779 -131700574 + CT-rich Low_complexity Low_complexity 4 69 0 184 186 0 23 chr1 110963788 110963831 -131700522 - L2 LINE L2 -1 3312 3271 216 317 83 0 chr1 110963841 110963901 -131700452 - MIR SINE MIR -135 127 63 312 274 116 0 chr1 110964733 110964828 -131699525 - MIR3 SINE MIR -30 178 73 687 291 100 0 chr1 110964843 110965063 -131699290 - MIR SINE MIR -3 259 18 249 323 24 24 chr1 110966007 110966131 -131698222 + MIR3 SINE MIR 14 137 -71 429 334 134 31 chr1 110966144 110966494 -131697859 - L3 LINE CR1 -116 1461 1076 29 28 0 0 chr1 110967079 110967115 -131697238 + AT_rich Low_complexity Low_complexity 1 36 0 1991 128 33 10 chr1 110967567 110967872 -131696481 - AluSx SINE Alu 0 312 1 1385 135 50 4 chr1 110967991 110968421 -131695932 - LTR54 LTR ERV1 0 510 1 1924 246 26 13 chr1 110968458 110968910 -131695443 - LTR49-int LTR ERV1 -443 7094 6637 4714 226 77 59 chr1 110968998 110971993 -131692360 - LTR49-int LTR ERV1 -690 4181 1707 458 232 116 26 chr1 110971995 110972041 -131692312 + MER34 LTR ERV1 1 41 -737 3108 168 30 14 chr1 110972041 110972632 -131691721 - MER7C DNA MER2_type 0 602 2 458 232 116 26 chr1 110972632 110972847 -131691506 + MER34 LTR ERV1 41 367 -411 638 225 30 24 chr1 110972966 110973144 -131691209 - LTR49-int LTR ERV1 -3351 2912 851 1337 190 12 119 chr1 110973236 110973657 -131690696 - LTR49-int LTR ERV1 -6695 842 467 7345 15 6 5 chr1 110974019 110974879 -131689474 + L1PA2 LINE L1 5293 6153 -2 819 221 33 128 chr1 110974889 110975244 -131689109 - LTR49-int LTR ERV1 -3680 2266 1933 2578 106 140 39 chr1 110975260 110975723 -131688630 - LTR54 LTR ERV1 0 510 1 230 309 94 20 chr1 110976484 110976633 -131687720 - L2 LINE L2 -301 3012 2853 304 306 68 10 chr1 110978551 110978682 -131685671 - MIR SINE MIR -68 140 38 248 299 0 0 chr1 110978838 110978905 -131685448 + L2 LINE L2 3206 3272 0 295 313 62 10 chr1 110979087 110979183 -131685170 + MIR SINE MIR 32 132 -130 248 322 181 7 chr1 110979244 110979393 -131684960 - MIR SINE MIR -68 194 20 189 175 0 0 chr1 110979714 110979754 -131684599 + CT-rich Low_complexity Low_complexity 3 42 0 1204 166 64 61 chr1 110981092 110981405 -131682948 - MER33 DNA MER1_type -10 314 1 207 69 0 0 chr1 110981853 110981882 -131682471 + (T)n Simple_repeat Simple_repeat 1 29 0 263 313 161 0 chr1 110981983 110982095 -131682258 - L2 LINE L2 0 3272 3143 230 314 153 24 chr1 110983637 110983885 -131680468 + L2 LINE L2 1883 2162 -1152 189 373 0 20 chr1 110984177 110984279 -131680074 + L2 LINE L2 2854 2953 -319 482 230 24 16 chr1 110984296 110984422 -131679931 - MER94 DNA DNA -7 127 1 1033 279 97 45 chr1 110984755 110985331 -131679022 - MLT1L LTR MaLR 0 615 10 25 31 0 0 chr1 110987060 110987092 -131677261 + AT_rich Low_complexity Low_complexity 1 32 0 984 194 94 5 chr1 110987195 110987386 -131676967 + MIR SINE MIR 34 241 -21 32 43 0 0 chr1 110987418 110987464 -131676889 + AT_rich Low_complexity Low_complexity 1 46 0 183 80 0 0 chr1 110988216 110988241 -131676112 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 243 193 53 0 chr1 110988853 110988910 -131675443 + MER103 DNA DNA 3 62 -104 454 313 34 14 chr1 110989058 110989205 -131675148 + MIR SINE MIR 28 177 -85 534 92 0 35 chr1 110989239 110989326 -131675027 - L1MA3 LINE L1 0 6305 6222 21 0 0 0 chr1 110989726 110989747 -131674606 + AT_rich Low_complexity Low_complexity 1 21 0 403 267 48 92 chr1 110990162 110990342 -131674011 - MIR SINE MIR 0 262 91 180 0 0 0 chr1 110990342 110990362 -131673991 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 403 267 48 92 chr1 110990362 110990387 -131673966 - MIR SINE MIR -171 91 66 834 150 54 7 chr1 110990960 110991107 -131673246 - MER5A DNA MER1_type -35 154 1 460 271 8 8 chr1 110991439 110991561 -131672792 + MIR SINE MIR 111 232 -30 1046 208 62 16 chr1 110991607 110991915 -131672438 + MER113 DNA MER1_type? 2 323 -198 225 207 0 17 chr1 110991916 110991974 -131672379 - MLT1J2 LTR MaLR -19 431 375 1785 149 16 45 chr1 110992855 110993163 -131671190 + AluJb SINE Alu 1 299 -13 192 40 0 0 chr1 110994427 110994452 -131669901 + (TC)n Simple_repeat Simple_repeat 2 26 0 187 414 63 9 chr1 110994524 110994635 -131669718 - L2 LINE L2 -40 3232 3116 1420 158 62 76 chr1 110995019 110995323 -131669030 + AluJo SINE Alu 1 300 -12 230 271 96 121 chr1 110995367 110995539 -131668814 - L2 LINE L2 -642 2672 2497 1342 102 76 0 chr1 110995539 110995775 -131668578 + L1MA8 LINE L1 6033 6286 -5 230 271 96 121 chr1 110995775 110996114 -131668239 - L2 LINE L2 -817 2497 2174 1158 247 42 103 chr1 110996711 110997205 -131667148 - LTR16B LTR ERVL 0 464 1 24 53 0 0 chr1 110997417 110997455 -131666898 + AT_rich Low_complexity Low_complexity 1 38 0 2084 126 0 0 chr1 110997464 110997750 -131666603 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr1 110997750 110997775 -131666578 + AT_rich Low_complexity Low_complexity 1 25 0 306 263 11 53 chr1 110999946 111000041 -131664312 + MIR SINE MIR 93 183 -79 198 314 39 29 chr1 111000142 111000244 -131664109 + MIR SINE MIR 86 188 -74 25 65 0 0 chr1 111000334 111000380 -131663973 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr1 111000539 111000561 -131663792 + AT_rich Low_complexity Low_complexity 1 22 0 3651 14 0 0 chr1 111000618 111001037 -131663316 - L1PA3 LINE L1 0 6155 5737 24 32 0 0 chr1 111001151 111001182 -131663171 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 111001369 111001390 -131662963 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 27 chr1 111001489 111001501 -131662852 + AT_rich Low_complexity Low_complexity 1 12 -24 757 114 0 0 chr1 111001501 111001615 -131662738 + L1PB1 LINE L1 6037 6150 -1 26 0 0 27 chr1 111001615 111001639 -131662714 + AT_rich Low_complexity Low_complexity 12 36 0 360 0 0 0 chr1 111004572 111004612 -131659741 + (CA)n Simple_repeat Simple_repeat 1 40 0 2321 102 0 0 chr1 111005682 111005987 -131658366 - AluSx SINE Alu -7 305 1 1356 181 22 84 chr1 111006968 111007288 -131657065 + AluJo SINE Alu 5 304 -8 317 231 64 0 chr1 111007565 111007643 -131656710 - MIR SINE MIR 0 262 180 27 49 0 0 chr1 111007658 111007699 -131656654 + AT_rich Low_complexity Low_complexity 1 41 0 306 282 91 0 chr1 111007706 111007816 -131656537 - MIR SINE MIR -62 200 81 237 186 136 0 chr1 111009049 111009108 -131655245 - MLT1G1 LTR MaLR 0 595 529 626 233 51 80 chr1 111009208 111009521 -131654832 - MLT1H LTR MaLR -221 328 25 1196 165 53 23 chr1 111010952 111011218 -131653135 + ORSL DNA AcHobo 2 275 0 392 338 73 15 chr1 111012239 111012471 -131651882 - MIR SINE MIR -16 246 3 180 200 127 36 chr1 111012517 111012572 -131651781 + L2 LINE L2 3203 3262 -10 740 282 17 21 chr1 111013004 111013294 -131651059 - HERV16 LTR ERVL -1900 3096 3036 1133 198 37 16 chr1 111013294 111013615 -131650738 - MLT1A1 LTR MaLR 0 365 1 1531 315 26 2 chr1 111013618 111014120 -131650233 - HERV16 LTR ERVL -1959 3037 2524 1686 292 34 18 chr1 111014354 111015364 -131648989 - HERV16 LTR ERVL -2854 2176 1035 1643 112 132 16 chr1 111015627 111015878 -131648475 + AluSx SINE Alu 3 282 -30 246 105 0 0 chr1 111015878 111015916 -131648437 + (TC)n Simple_repeat Simple_repeat 1 38 0 429 167 0 0 chr1 111015916 111015994 -131648359 + (TA)n Simple_repeat Simple_repeat 2 79 0 560 367 92 36 chr1 111016631 111017457 -131646896 + L2 LINE L2 1935 2806 -508 1624 199 25 35 chr1 111017489 111017855 -131646498 + MLT1A2 LTR MaLR 2 363 -11 255 301 96 36 chr1 111018033 111018252 -131646101 - LTR67 LTR ERVL 0 557 326 618 174 58 0 chr1 111018619 111018757 -131645596 - MER97a DNA MER1_type? 0 894 749 30 0 0 0 chr1 111018800 111018830 -131645523 + AT_rich Low_complexity Low_complexity 1 30 0 2736 97 24 14 chr1 111018830 111019244 -131645109 - L1PA13 LINE L1 -5 6158 5741 268 189 19 0 chr1 111019245 111019298 -131645055 - MLT1G LTR MaLR -380 210 157 513 148 59 0 chr1 111019305 111019406 -131644947 - L1PA13 LINE L1 -428 5740 5634 38 0 0 0 chr1 111019406 111019444 -131644909 + AT_rich Low_complexity Low_complexity 1 38 0 320 202 36 0 chr1 111019446 111019530 -131644823 - MER97c DNA MER1_type? -368 722 636 519 202 57 16 chr1 111019530 111019654 -131644699 - FRAM SINE Alu -13 163 35 1716 201 41 63 chr1 111019654 111020117 -131644236 - MER97b DNA MER1_type? -407 646 194 1471 261 106 21 chr1 111020117 111020635 -131643718 - MLT1G LTR MaLR 0 590 29 724 216 158 0 chr1 111020687 111020858 -131643495 - MER97c DNA MER1_type? -892 198 1 870 237 51 9 chr1 111021747 111021962 -131642391 - MIR SINE MIR -26 236 13 199 348 33 11 chr1 111022555 111022647 -131641706 + L2 LINE L2 2552 2645 -669 618 198 111 31 chr1 111022719 111022881 -131641472 + MER45A DNA AcHobo 3 177 -1 261 385 34 14 chr1 111023334 111023482 -131640871 + L2 LINE L2 3122 3272 0 2435 59 7 0 chr1 111024467 111024755 -131639598 - AluY SINE Alu -12 299 10 699 257 90 5 chr1 111024839 111025061 -131639292 + MER46C DNA MER2_type 98 338 0 191 375 70 23 chr1 111025084 111025212 -131639141 - MIR SINE MIR -116 146 13 212 264 264 0 chr1 111025523 111025610 -131638743 - L2 LINE L2 -1 3312 3203 322 283 88 62 chr1 111026094 111026366 -131637987 + L2 LINE L2 2686 2964 -350 842 266 84 0 chr1 111026439 111026676 -131637677 + MIR SINE MIR 6 262 0 29 47 0 0 chr1 111026774 111026817 -131637536 + AT_rich Low_complexity Low_complexity 1 43 0 415 356 34 0 chr1 111028757 111028906 -131635447 - MIR SINE MIR -89 173 20 23 33 0 0 chr1 111029131 111029161 -131635192 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 111029247 111029271 -131635082 + AT_rich Low_complexity Low_complexity 1 24 0 1306 196 81 18 chr1 111029363 111029395 -131634958 - Charlie5 DNA MER1_type 0 2624 2595 216 0 0 0 chr1 111029395 111029419 -131634934 + (TA)n Simple_repeat Simple_repeat 2 25 0 1306 196 81 18 chr1 111029419 111029769 -131634584 - Charlie5 DNA MER1_type -29 2595 2218 380 238 29 9 chr1 111029763 111029868 -131634485 - Charlie5 DNA MER1_type -2503 109 3 * 34 55 0 0 chr1 111030022 111030077 -131634276 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr1 111031111 111031134 -131633219 + AT_rich Low_complexity Low_complexity 1 23 0 632 306 209 35 chr1 111031139 111031470 -131632883 + L3 LINE CR1 567 971 -606 450 0 0 0 chr1 111031470 111031520 -131632833 + (CA)n Simple_repeat Simple_repeat 2 51 0 632 306 209 35 chr1 111031520 111031561 -131632792 + L3 LINE CR1 971 1004 -573 287 285 81 107 chr1 111031584 111031882 -131632471 + L3 LINE CR1 969 1258 -319 235 307 24 71 chr1 111032121 111032248 -131632105 + L2 LINE L2 2955 3075 -197 * 289 196 0 0 chr1 111032217 111032263 -131632090 + L2 LINE L2 3255 3300 -13 452 262 35 21 chr1 111033699 111033844 -131630509 + MIR SINE MIR 116 262 0 2422 78 0 0 chr1 111034956 111035264 -131629089 - AluY SINE Alu -3 308 1 529 244 26 130 chr1 111038801 111039109 -131625244 + L2 LINE L2 3038 3313 0 211 333 83 0 chr1 111039136 111039220 -131625133 + MIR SINE MIR 156 246 -16 669 286 29 15 chr1 111039608 111039814 -131624539 - MIR SINE MIR -52 210 2 388 312 116 68 chr1 111040083 111040783 -131623570 - L2 LINE L2 -47 3266 2440 232 279 49 0 chr1 111040963 111041024 -131623329 - MIR3 SINE MIR -38 170 107 975 258 9 0 chr1 111041289 111041502 -131622851 + MER58A DNA MER1_type 6 220 -4 413 303 63 17 chr1 111042114 111042289 -131622064 + MER5A DNA MER1_type 7 189 0 28 0 0 0 chr1 111042374 111042402 -131621951 + AT_rich Low_complexity Low_complexity 1 28 0 528 65 52 0 chr1 111042402 111042479 -131621874 - L1PA3 LINE L1 -3 6152 6072 1787 148 3 36 chr1 111043372 111043675 -131620678 + AluSx SINE Alu 1 293 -19 288 236 0 0 chr1 111043872 111043927 -131620426 + L2 LINE L2 3251 3305 -8 1231 347 82 31 chr1 111044096 111045046 -131619307 + L3 LINE CR1 467 1512 -65 195 279 33 0 chr1 111045090 111045151 -131619202 - MIR SINE MIR 0 262 200 809 287 97 26 chr1 111045228 111045630 -131618723 + MLT1J LTR MaLR 3 394 -52 280 289 0 62 chr1 111045671 111045768 -131618585 - MIR SINE MIR -107 155 65 1723 144 0 67 chr1 111045898 111046211 -131618142 + AluJo SINE Alu 3 294 -18 3236 175 17 17 chr1 111047000 111047593 -131616760 + MER6A DNA MER2_type 1 593 -12 286 281 235 32 chr1 111048230 111048447 -131615906 + MIR SINE MIR 2 262 0 8165 129 13 16 chr1 111048548 111049947 -131614406 + L1P LINE L1 1879 3273 -2873 368 167 0 13 chr1 111050115 111050193 -131614160 + CT-rich Low_complexity Low_complexity 2 78 0 2047 128 28 0 chr1 111051751 111052041 -131612312 + AluSx SINE Alu 1 298 -14 358 339 58 40 chr1 111052275 111052552 -131611801 + HAL1b LINE L1 77 358 -990 303 250 31 10 chr1 111052835 111052931 -131611422 + MLT1I LTR MaLR 273 370 -39 324 172 7 55 chr1 111052937 111053082 -131611271 + (TA)n Simple_repeat Simple_repeat 1 138 0 225 273 73 18 chr1 111053298 111053408 -131610945 + HAL1 LINE L1 1537 1652 -855 24 0 0 0 chr1 111054712 111054736 -131609617 + AT_rich Low_complexity Low_complexity 1 24 0 297 319 241 5 chr1 111055371 111055562 -131608791 + MIR SINE MIR 21 256 -6 21 0 0 0 chr1 111056659 111056680 -131607673 + AT_rich Low_complexity Low_complexity 1 21 0 242 280 124 0 chr1 111057118 111057220 -131607133 - MIR SINE MIR -97 111 34 379 282 42 7 chr1 111057372 111057514 -131606839 - L1ME LINE L1 -386 5735 5589 1808 259 97 0 chr1 111057781 111058340 -131606013 - L1ME1 LINE L1 -5 6161 5549 204 376 169 9 chr1 111058962 111059305 -131605048 - L2 LINE L2 -2200 1114 717 1235 126 0 6 chr1 111059408 111059583 -131604770 + AluSg/x SINE Alu 127 300 -12 327 293 25 45 chr1 111059836 111059993 -131604360 - MER5A DNA MER1_type 0 189 36 722 225 59 6 chr1 111060043 111060212 -131604141 + MER5B DNA MER1_type 1 178 0 438 234 106 20 chr1 111060923 111061189 -131603164 - MER46C DNA MER2_type -2 336 18 21 57 0 0 chr1 111061252 111061287 -131603066 + AT_rich Low_complexity Low_complexity 1 35 0 333 323 16 8 chr1 111061366 111061490 -131602863 - MIR SINE MIR -55 207 83 21 0 0 0 chr1 111062501 111062522 -131601831 + AT_rich Low_complexity Low_complexity 1 21 0 1889 171 91 6 chr1 111063803 111064166 -131600187 - MSTD LTR MaLR -2 394 1 421 232 72 0 chr1 111064166 111064291 -131600062 - MER94 DNA DNA 0 134 1 207 0 0 0 chr1 111065601 111065624 -131598729 + (A)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chr1 111066274 111066300 -131598053 + AT_rich Low_complexity Low_complexity 1 26 0 589 256 58 0 chr1 111066303 111066440 -131597913 + L2 LINE L2 3127 3271 -1 21 0 0 0 chr1 111066851 111066872 -131597481 + AT_rich Low_complexity Low_complexity 1 21 0 450 311 53 37 chr1 111067172 111067362 -131596991 - MIR SINE MIR -50 212 20 21 36 0 0 chr1 111067529 111067557 -131596796 + AT_rich Low_complexity Low_complexity 1 28 0 213 324 88 20 chr1 111070081 111070183 -131594170 - L2 LINE L2 -1 3271 3163 992 204 182 80 chr1 111070438 111070839 -131593514 - MLT1H LTR MaLR -107 442 1 208 175 0 25 chr1 111071242 111071282 -131593071 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3470 202 29 26 chr1 111071282 111072074 -131592279 + Tigger6a DNA MER2_type 7 800 -283 1694 180 28 67 chr1 111072074 111072127 -131592226 - MLT1A2 LTR MaLR 0 374 320 1887 164 17 20 chr1 111072127 111072475 -131591878 - MER7A DNA MER2_type 0 346 2 1694 180 28 67 chr1 111072475 111072810 -131591543 - MLT1A2 LTR MaLR -54 320 1 1225 169 62 4 chr1 111072810 111073082 -131591271 + Tigger6a DNA MER2_type 796 1083 0 318 301 4 4 chr1 111073084 111073342 -131591011 + (TA)n Simple_repeat Simple_repeat 1 258 0 2255 100 3 3 chr1 111073620 111073919 -131590434 - AluSx SINE Alu -13 299 1 1622 197 79 14 chr1 111074236 111074602 -131589751 - MLT1B LTR MaLR 0 390 1 249 33 0 0 chr1 111075667 111075697 -131588656 + (TG)n Simple_repeat Simple_repeat 2 31 0 737 255 134 14 chr1 111075770 111076191 -131588162 + L1ME4a LINE L1 5488 5952 -169 1529 176 56 39 chr1 111076565 111076923 -131587430 - THE1B LTR MaLR 0 364 1 1304 130 4 57 chr1 111077052 111077282 -131587071 + MER20 DNA MER1_type 2 219 0 316 269 19 29 chr1 111077357 111077461 -131586892 + MIR SINE MIR 90 192 -70 32525 102 13 85 chr1 111077514 111082416 -131581937 + L1PA16 LINE L1 11 5260 -906 3117 75 27 16 chr1 111082416 111082859 -131581494 + LTR7 LTR ERV1 1 448 -2 32525 102 13 85 chr1 111082859 111083105 -131581248 + L1PA16 LINE L1 5260 5522 -644 210 37 0 0 chr1 111083105 111083132 -131581221 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 32525 102 13 85 chr1 111083132 111084263 -131580090 + L1PA16 LINE L1 5522 5845 -321 551 129 10 0 chr1 111084363 111084464 -131579889 + L1PA16 LINE L1 6061 6162 -4 4932 145 25 27 chr1 111084505 111084785 -131579568 + L1MA4 LINE L1 5386 5665 -635 1660 98 68 0 chr1 111084785 111085020 -131579333 + AluSc SINE Alu 41 291 -18 4932 145 25 27 chr1 111085020 111085656 -131578697 + L1MA4 LINE L1 5665 6300 0 411 261 200 11 chr1 111088164 111088344 -131576009 - MIR SINE MIR -12 250 37 695 309 19 15 chr1 111088595 111088854 -131575499 - MIR SINE MIR 0 262 3 22 0 0 0 chr1 111088977 111088999 -131575354 + AT_rich Low_complexity Low_complexity 1 22 0 424 286 8 0 chr1 111089020 111089139 -131575214 - MIR SINE MIR -48 214 95 218 206 0 103 chr1 111090811 111090879 -131573474 - L2 LINE L2 -12 3260 3200 225 0 0 0 chr1 111091862 111091887 -131572466 + (TG)n Simple_repeat Simple_repeat 2 26 0 1682 196 110 102 chr1 111092116 111092855 -131571498 - LTR1B LTR ERV1 -81 745 1 232 329 118 0 chr1 111092954 111093039 -131571314 - L2 LINE L2 -35 3237 3143 271 35 379 0 chr1 111093066 111093124 -131571229 - MADE1 DNA Mariner 0 80 1 444 248 135 4 chr1 111093311 111093541 -131570812 + L1ME4a LINE L1 5691 5950 -171 5423 90 5 11 chr1 111093614 111094373 -131569980 - L1PA8A LINE L1 -3 6128 5374 2571 84 3 0 chr1 111094473 111094818 -131569535 + L1PA6 LINE L1 5801 6146 -8 985 92 12 67 chr1 111095292 111095456 -131568897 + L1MC3 LINE L1 6670 6824 -961 318 50 0 0 chr1 111095466 111095506 -131568847 + (CA)n Simple_repeat Simple_repeat 1 40 0 1051 222 102 63 chr1 111095506 111096015 -131568338 - MER39 LTR ERV1 -2 705 5 713 181 15 54 chr1 111096023 111096227 -131568126 + L1MC3 LINE L1 6870 7065 -720 234 319 0 0 chr1 111096251 111096320 -131568033 + MLT1F1 LTR MaLR 35 103 -464 3197 127 5 69 chr1 111096349 111097002 -131567351 - MER4B LTR ERV1 0 779 1 2725 188 30 14 chr1 111097002 111097576 -131566777 + L1MC3 LINE L1 7203 7785 0 24 0 0 0 chr1 111097582 111097606 -131566747 + AT_rich Low_complexity Low_complexity 1 24 0 2244 68 7 0 chr1 111097794 111098096 -131566257 + AluY SINE Alu 1 304 0 231 200 0 55 chr1 111098615 111098670 -131565683 - MER117 DNA MER1_type -52 145 94 402 218 10 20 chr1 111098882 111098983 -131565370 + LTR43 LTR ERV1 197 296 -306 229 243 254 66 chr1 111099986 111100167 -131564186 + L2 LINE L2 3099 3313 0 347 293 9 17 chr1 111100778 111100894 -131563459 - Charlie8 DNA MER1_type -2195 222 108 28 29 0 0 chr1 111102127 111102162 -131562191 + AT_rich Low_complexity Low_complexity 1 35 0 288 368 8 8 chr1 111102176 111102301 -131562052 + MIR SINE MIR 3 127 -135 291 225 0 0 chr1 111102302 111102373 -131561980 + L1ME1 LINE L1 5170 5240 -906 1378 128 53 4 chr1 111102374 111102601 -131561752 - Tigger5 DNA MER2_type 0 2323 2086 2183 123 39 31 chr1 111102673 111103032 -131561321 + THE1B LTR MaLR 1 362 -2 10819 121 6 3 chr1 111103033 111104595 -131559758 + THE1B-int LTR MaLR 14 1580 0 2121 122 47 36 chr1 111104595 111104955 -131559398 + THE1B LTR MaLR 1 364 0 6680 179 21 7 chr1 111104958 111105454 -131558899 + L1PB4 LINE L1 3891 4378 -1778 234 0 0 0 chr1 111105454 111105480 -131558873 + (CA)n Simple_repeat Simple_repeat 2 27 0 6680 179 21 7 chr1 111105480 111107211 -131557142 + L1PB4 LINE L1 4378 6155 -1 682 208 0 0 chr1 111107252 111107372 -131556981 + FRAM SINE Alu 36 155 -21 2620 260 12 34 chr1 111107372 111108187 -131556166 + L1ME1 LINE L1 5320 6116 -50 413 318 0 7 chr1 111108080 111108228 -131556125 + L1MA10 LINE L1 6169 6315 -19 * 941 54 77 8 chr1 111108229 111108359 -131555994 - MER85 DNA T2_type 0 139 1 25 51 0 0 chr1 111108446 111108485 -131555868 + AT_rich Low_complexity Low_complexity 1 39 0 191 36 36 0 chr1 111108900 111108928 -131555425 + (GA)n Simple_repeat Simple_repeat 2 30 0 268 273 23 47 chr1 111109547 111109675 -131554678 + L1MEc LINE L1 60 184 -6212 310 386 22 48 chr1 111109798 111110070 -131554283 + L1MEc LINE L1 289 553 -5843 4103 31 4 0 chr1 111110082 111110567 -131553786 - L1PA5 LINE L1 0 6154 5668 3411 31 0 0 chr1 111110567 111111119 -131553234 + L1PA5 LINE L1 5113 5664 -491 931 300 44 57 chr1 111111285 111112376 -131551977 + L1MEc LINE L1 573 1819 -4577 2053 228 45 85 chr1 111112407 111113299 -131551054 + L1MEc LINE L1 2163 3003 -3212 3443 268 95 116 chr1 111113299 111113669 -131550684 - L2 LINE L2 -620 2694 2317 2017 117 0 3 chr1 111113669 111113952 -131550401 + AluSq SINE Alu 2 283 -30 3443 268 95 116 chr1 111113952 111114007 -131550346 - L2 LINE L2 -997 2317 2262 234 0 0 0 chr1 111114007 111114033 -131550320 + (CA)n Simple_repeat Simple_repeat 1 26 0 3443 268 95 116 chr1 111114033 111114446 -131549907 - L2 LINE L2 -1052 2262 1842 427 74 0 0 chr1 111114446 111114500 -131549853 + AluSq/x SINE Alu 70 123 -190 3443 268 95 116 chr1 111114500 111115996 -131548357 - L2 LINE L2 -1472 1842 357 238 342 0 0 chr1 111116237 111116313 -131548040 + CT-rich Low_complexity Low_complexity 1 76 0 208 232 72 29 chr1 111116971 111117040 -131547313 + L2 LINE L2 3148 3219 -94 2752 182 42 4 chr1 111117278 111117784 -131546569 - MER44D DNA MER2_type -13 592 13 184 194 0 0 chr1 111118230 111118266 -131546087 - L2 LINE L2 -6 3307 3272 244 375 36 47 chr1 111118367 111118642 -131545711 - L2 LINE L2 -184 3088 2817 25 0 0 0 chr1 111119208 111119233 -131545120 + AT_rich Low_complexity Low_complexity 1 25 0 601 133 148 15 chr1 111119314 111119449 -131544904 + L1MA4 LINE L1 6147 6299 -1 302 190 58 80 chr1 111119466 111119603 -131544750 + L1MA7 LINE L1 6034 6167 -124 * 10812 219 17 19 chr1 111119590 111120564 -131543789 + L1P LINE L1 2351 3326 -2820 263 48 0 24 chr1 111120564 111120606 -131543747 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 10812 219 17 19 chr1 111120606 111120955 -131543398 + L1P LINE L1 3326 3674 -2472 1857 134 14 0 chr1 111120955 111121230 -131543123 + AluSg SINE Alu 1 279 -31 209 33 33 0 chr1 111121234 111121264 -131543089 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 10812 219 17 19 chr1 111121264 111122326 -131542027 + L1P LINE L1 3677 4738 -1408 2484 66 0 3 chr1 111122326 111122630 -131541723 + AluY SINE Alu 1 303 -8 10812 219 17 19 chr1 111122630 111122836 -131541517 + L1P LINE L1 4738 4943 -1203 5889 172 14 21 chr1 111122937 111123669 -131540684 + L1PA15 LINE L1 4018 4753 -1547 2484 66 0 3 chr1 111123669 111123973 -131540380 + AluY SINE Alu 1 303 -8 5889 172 14 21 chr1 111123973 111124679 -131539674 + L1PA15 LINE L1 4753 5462 -838 2035 127 0 0 chr1 111124679 111124984 -131539369 + AluSx SINE Alu 1 305 0 5889 172 14 21 chr1 111124984 111125826 -131538527 + L1PA15 LINE L1 5462 6294 -6 2221 214 44 39 chr1 111126001 111126534 -131537819 + MLT1F LTR MaLR 7 549 0 1565 206 130 41 chr1 111126651 111127111 -131537242 + MLT1D LTR MaLR 5 505 0 247 284 134 24 chr1 111127593 111127720 -131536633 - MIR SINE MIR -58 204 64 214 341 33 116 chr1 111127883 111128185 -131536168 - L2 LINE L2 -50 3222 2946 1856 124 80 0 chr1 111128201 111128476 -131535877 + AluSx SINE Alu 1 297 -15 385 244 0 13 chr1 111129368 111129446 -131534907 + L2 LINE L2 3210 3286 -27 282 56 0 0 chr1 111129550 111129586 -131534767 + (CA)n Simple_repeat Simple_repeat 1 36 0 2171 179 38 16 chr1 111129588 111130012 -131534341 + MLT1C LTR MaLR 32 464 -3 561 274 130 13 chr1 111130710 111130940 -131533413 - MLT1J2 LTR MaLR -5 445 189 189 74 0 0 chr1 111131589 111131616 -131532737 + (TTG)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr1 111132037 111132066 -131532287 + AT_rich Low_complexity Low_complexity 1 29 0 1477 182 0 11 chr1 111132125 111132389 -131531964 + AluJo SINE Alu 2 262 -50 444 51 0 0 chr1 111134711 111134770 -131529583 + (TG)n Simple_repeat Simple_repeat 2 60 0 1280 141 0 0 chr1 111134789 111134974 -131529379 - AluSq SINE Alu 0 313 129 727 158 0 0 chr1 111135265 111135379 -131528974 + MER47A DNA MER2_type 25 138 -228 27 62 0 0 chr1 111135540 111135588 -131528765 + AT_rich Low_complexity Low_complexity 1 48 0 618 226 127 23 chr1 111135596 111135817 -131528536 - L1ME2 LINE L1 -7 6157 5914 593 225 35 21 chr1 111135871 111136013 -131528340 + MER106B DNA MER1_type 6 149 -910 887 208 29 25 chr1 111136111 111136356 -131527997 - L1MDb LINE L1 -3446 2960 2715 716 291 50 9 chr1 111136363 111136583 -131527770 + L2 LINE L2 2428 2656 -658 11159 142 38 2 chr1 111136583 111138452 -131525901 + Tigger1 DNA MER2_type 482 2418 0 263 88 0 0 chr1 111139657 111139691 -131524662 - MER3 DNA MER1_type -158 51 18 356 224 17 52 chr1 111139703 111139819 -131524534 - L1ME2 LINE L1 -151 6013 5902 1431 157 5 0 chr1 111139917 111140134 -131524219 + AluSx SINE Alu 4 221 -91 221 164 0 18 chr1 111140149 111140204 -131524149 + GA-rich Low_complexity Low_complexity 2 55 0 193 226 94 0 chr1 111140206 111140259 -131524094 + L3 LINE CR1 1518 1575 -2 1203 236 70 76 chr1 111140450 111141227 -131523126 - L1M4 LINE L1 -1109 5037 4266 1234 288 66 15 chr1 111141357 111142139 -131522214 - L1MDb LINE L1 -4594 1993 1136 676 258 128 110 chr1 111142540 111142985 -131521368 - MLT1F LTR MaLR -89 453 1 2394 167 26 12 chr1 111143033 111143453 -131520900 - MSTB LTR MaLR 0 426 1 7694 189 50 16 chr1 111143453 111145049 -131519304 - MSTB-int LTR MaLR 0 1651 1 2227 193 26 9 chr1 111145049 111145468 -131518885 - MSTB LTR MaLR 0 426 1 1252 173 7 72 chr1 111145672 111145949 -131518404 - AluJo SINE Alu -14 298 40 2383 85 0 0 chr1 111147545 111147850 -131516503 + AluY SINE Alu 4 308 -3 350 319 60 0 chr1 111148696 111148812 -131515541 + MIR SINE MIR 78 200 -62 27 49 0 0 chr1 111148819 111148860 -131515493 + AT_rich Low_complexity Low_complexity 1 41 0 317 231 64 0 chr1 111148875 111148953 -131515400 + MIR SINE MIR 180 262 0 1354 181 22 84 chr1 111149230 111149550 -131514803 - AluJo SINE Alu -8 304 5 2247 102 7 0 chr1 111150532 111150835 -131513518 + AluSx SINE Alu 1 305 -7 1057 96 0 39 chr1 111150835 111151015 -131513338 + AluSc SINE Alu 132 305 0 22 0 0 0 chr1 111151754 111151776 -131512577 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr1 111153688 111153717 -131510636 + AT_rich Low_complexity Low_complexity 1 29 0 400 348 54 62 chr1 111154121 111154567 -131509786 + L2 LINE L2 2601 3040 -232 189 0 0 0 chr1 111154887 111154908 -131509445 + (A)n Simple_repeat Simple_repeat 1 21 0 252 218 210 16 chr1 111154969 111155093 -131509260 + MLT1J2 LTR MaLR 67 214 -236 263 207 0 17 chr1 111155162 111155220 -131509133 + MLT1I LTR MaLR 316 372 -37 281 321 255 16 chr1 111155254 111155497 -131508856 + L3 LINE CR1 1239 1539 -38 413 265 118 15 chr1 111156131 111156267 -131508086 - L2 LINE L2 0 3313 3164 364 381 72 7 chr1 111157727 111158034 -131506319 + LTR16C LTR ERVL 150 476 -15 185 205 26 0 chr1 111158098 111158137 -131506216 - MIR SINE MIR -12 250 211 807 226 39 28 chr1 111158593 111159054 -131505299 + MLT1G1 LTR MaLR 1 567 0 224 77 26 0 chr1 111159253 111159292 -131505061 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 293 257 44 35 chr1 111159413 111159526 -131504827 + MLT1G1-int LTR MaLR 430 543 -828 260 279 63 18 chr1 111160397 111160508 -131503845 + MLT1G1-int LTR MaLR 1249 1364 -7 682 281 30 5 chr1 111160515 111160718 -131503635 + MLT1G1 LTR MaLR 1 208 -387 25 31 0 0 chr1 111161681 111161713 -131502640 + AT_rich Low_complexity Low_complexity 1 32 0 219 157 0 96 chr1 111162087 111162170 -131502183 + T-rich Low_complexity Low_complexity 2 76 0 324 305 32 11 chr1 111162872 111162967 -131501386 - L2 LINE L2 -2 3311 3215 4519 182 22 33 chr1 111163181 111164201 -131500152 - L1 LINE L1 -1839 5010 4003 2424 117 42 0 chr1 111164201 111164559 -131499794 + THE1C LTR MaLR 3 375 0 10175 110 40 13 chr1 111164593 111166122 -131498231 + THE1C-int LTR MaLR 10 1579 -1 2300 136 5 8 chr1 111166125 111166494 -131497859 + THE1C LTR MaLR 3 370 -5 3703 219 17 46 chr1 111166498 111167827 -131496526 - L1PA15-16 LINE L1 -2840 4009 2723 439 238 66 0 chr1 111167823 111167945 -131496408 + L1 LINE L1 4324 4453 -1693 * 3144 75 27 16 chr1 111167947 111168390 -131495963 + LTR7 LTR ERV1 1 448 -2 15070 103 35 26 chr1 111168392 111171239 -131493114 + HERVH LTR ERV1 1 2995 -4718 5605 112 12 2 chr1 111171218 111172064 -131492289 + HERVH LTR ERV1 3140 3993 -3720 * 3075 124 2 2 chr1 111172066 111172677 -131491676 + HERVH LTR ERV1 4488 5146 -2567 17468 144 17 13 chr1 111172790 111176178 -131488175 - L1P3 LINE L1 -756 5705 2331 2170 137 0 3 chr1 111176178 111176491 -131487862 - AluSq SINE Alu -1 312 1 17468 144 17 13 chr1 111176491 111177540 -131486813 - L1P3 LINE L1 -4130 2331 1287 234 0 0 0 chr1 111177540 111177566 -131486787 + (ATG)n Simple_repeat Simple_repeat 1 26 0 17468 144 17 13 chr1 111177566 111178699 -131485654 - L1P3 LINE L1 -5174 1287 2 863 246 22 15 chr1 111178702 111178974 -131485379 - L1ME LINE L1 -608 5558 5285 23 33 0 0 chr1 111178982 111179012 -131485341 + AT_rich Low_complexity Low_complexity 1 30 0 1339 230 39 3 chr1 111179045 111179328 -131485025 + AluJo SINE Alu 1 293 -9 25 0 0 0 chr1 111179337 111179362 -131484991 + AT_rich Low_complexity Low_complexity 1 25 0 2937 259 93 18 chr1 111179422 111180621 -131483732 - L1MEc LINE L1 -5023 1373 84 22 0 0 0 chr1 111180902 111180924 -131483429 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr1 111181082 111181117 -131483236 + AT_rich Low_complexity Low_complexity 1 35 0 319 340 147 5 chr1 111182574 111182765 -131481588 + MIR SINE MIR 18 235 -27 2137 110 0 20 chr1 111183120 111183420 -131480933 + AluSq SINE Alu 3 296 -17 22 35 0 0 chr1 111184588 111184617 -131479736 + AT_rich Low_complexity Low_complexity 1 29 0 1293 261 80 39 chr1 111184803 111185289 -131479064 + L2 LINE L2 2806 3311 -2 359 221 53 21 chr1 111185658 111185753 -131478600 - MIR SINE MIR -26 236 139 1121 152 10 10 chr1 111185753 111185950 -131478403 + MLT1B LTR MaLR 1 197 -193 303 89 0 71 chr1 111185961 111186017 -131478336 - MLT2D LTR ERVL 0 520 469 623 217 149 83 chr1 111186175 111186483 -131477870 - MLT2D LTR ERVL -73 341 1 3111 170 16 0 chr1 111186529 111187042 -131477311 + Tigger7 DNA MER2_type 1 521 -212 512 146 34 0 chr1 111187041 111187130 -131477223 + Tigger7 DNA MER2_type 2396 2487 0 * 6006 147 49 45 chr1 111187134 111188243 -131476110 - ERVL-D LTR ERVL -57 5707 4595 604 170 0 47 chr1 111188247 111188402 -131475951 + MLT1B LTR MaLR 204 390 0 633 76 0 0 chr1 111188409 111188501 -131475852 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 205 302 0 0 chr1 111188507 111188560 -131475793 - MIR SINE MIR -139 123 71 24 67 0 0 chr1 111189433 111189478 -131474875 + AT_rich Low_complexity Low_complexity 1 45 0 1726 171 14 11 chr1 111189517 111189803 -131474550 - AluJo SINE Alu -25 287 1 598 294 0 12 chr1 111190171 111190334 -131474019 - MER45A DNA AcHobo 0 178 18 339 294 35 28 chr1 111191318 111191461 -131472892 + MLT1J LTR MaLR 6 149 -362 1068 271 180 22 chr1 111192237 111192816 -131471537 + Charlie2b DNA MER1_type 1 670 -2112 1345 184 75 3 chr1 111192954 111193259 -131471094 + Charlie2a DNA MER1_type 1542 1868 -994 734 301 71 28 chr1 111193329 111193725 -131470628 + LTR16B LTR ERVL 34 446 -18 266 191 235 0 chr1 111193733 111193801 -131470552 + Charlie2a DNA MER1_type 1871 1954 -908 247 250 90 10 chr1 111193946 111194046 -131470307 + MLT1L LTR MaLR 183 290 -325 223 336 0 0 chr1 111194778 111194882 -131469471 + (TA)n Simple_repeat Simple_repeat 2 105 0 435 340 133 23 chr1 111195501 111195766 -131468587 + L2 LINE L2 2837 3072 -241 1862 184 43 45 chr1 111195766 111196234 -131468119 + MLT1C LTR MaLR 1 467 0 435 340 133 23 chr1 111196234 111196398 -131467955 + L2 LINE L2 3072 3313 0 200 319 17 17 chr1 111197006 111197122 -131467231 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 183 220 20 40 chr1 111197344 111197394 -131466959 - MIR SINE MIR -115 147 99 22 56 0 0 chr1 111197773 111197809 -131466544 + AT_rich Low_complexity Low_complexity 1 36 0 668 232 142 0 chr1 111198226 111198416 -131465937 - MER20 DNA MER1_type 0 219 3 278 280 42 25 chr1 111198514 111198571 -131465782 + MLT1K LTR MaLR 461 516 -72 198 0 0 0 chr1 111198571 111198593 -131465760 + (TA)n Simple_repeat Simple_repeat 2 23 0 278 280 42 25 chr1 111198593 111198653 -131465700 + MLT1K LTR MaLR 516 580 -8 1091 209 115 0 chr1 111198656 111198934 -131465419 + L1MB7 LINE L1 4890 5199 -947 3660 154 66 25 chr1 111198961 111199721 -131464632 + L1MB7 LINE L1 5265 6055 -129 346 296 87 68 chr1 111199721 111200076 -131464277 + L1MC4a LINE L1 5730 6091 -1717 331 171 225 18 chr1 111200192 111200303 -131464050 - MIR SINE MIR -34 228 95 1733 184 46 34 chr1 111200313 111200726 -131463627 - LTR52 LTR ERVL -3 418 1 251 261 141 0 chr1 111201028 111201120 -131463233 + L2 LINE L2 3190 3294 -19 198 176 0 0 chr1 111201684 111201735 -131462618 + (TA)n Simple_repeat Simple_repeat 2 52 0 426 310 96 5 chr1 111202332 111202519 -131461834 + MIR SINE MIR 51 254 -8 210 171 0 0 chr1 111203040 111203081 -131461272 + (TATG)n Simple_repeat Simple_repeat 1 41 0 310 197 45 0 chr1 111203868 111203934 -131460419 - L2 LINE L2 -5 3308 3240 431 269 96 12 chr1 111204198 111204252 -131460101 + L1MEc LINE L1 36 84 -6312 279 0 0 0 chr1 111204252 111204283 -131460070 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 431 269 96 12 chr1 111204283 111204395 -131459958 + L1MEc LINE L1 84 216 -6180 1939 144 6 46 chr1 111204405 111204751 -131459602 + MLT1B LTR MaLR 40 371 -19 2471 152 31 2 chr1 111204753 111205167 -131459186 - MSTB LTR MaLR 0 426 1 1020 281 81 0 chr1 111205183 111205518 -131458835 + L1MEc LINE L1 213 574 -5822 216 0 0 0 chr1 111205564 111205588 -131458765 + (A)n Simple_repeat Simple_repeat 1 24 0 198 0 0 0 chr1 111205748 111205770 -131458583 + (A)n Simple_repeat Simple_repeat 1 22 0 1364 226 88 42 chr1 111205778 111206427 -131457926 + L1MEc LINE L1 1729 2407 -3989 729 147 0 0 chr1 111206432 111206541 -131457812 + FLAM_C SINE Alu 4 112 -31 25 51 0 0 chr1 111206543 111206582 -131457771 + AT_rich Low_complexity Low_complexity 1 39 0 4318 246 92 10 chr1 111206593 111208184 -131456169 + L1MEc LINE L1 2383 4104 -2111 327 279 143 7 chr1 111208997 111209137 -131455216 - MIR SINE MIR -2 260 102 500 255 149 29 chr1 111209248 111209456 -131454897 - Charlie2 DNA MER1_type -2629 233 1 273 302 42 21 chr1 111211095 111211191 -131453162 + MIR3 SINE MIR 84 181 -27 216 67 0 0 chr1 111211487 111211517 -131452836 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 271 294 167 0 chr1 111211772 111211898 -131452455 - MIR SINE MIR -112 150 4 26 50 0 0 chr1 111211980 111212020 -131452333 + AT_rich Low_complexity Low_complexity 1 40 0 277 322 0 11 chr1 111212909 111212996 -131451357 - MIR3 SINE MIR -15 193 108 324 0 0 0 chr1 111213519 111213555 -131450798 + (TG)n Simple_repeat Simple_repeat 2 37 0 2204 105 0 29 chr1 111213907 111214221 -131450132 + AluSx SINE Alu 1 305 -7 275 179 0 0 chr1 111214591 111214647 -131449706 - MER5C DNA MER1_type 0 324 269 207 200 0 0 chr1 111214801 111214846 -131449507 - MER5C DNA MER1_type -200 124 80 247 206 0 68 chr1 111215005 111215078 -131449275 - MER103 DNA DNA -55 111 44 263 293 9 35 chr1 111215675 111215791 -131448562 + MER103 DNA DNA 3 115 -51 29 47 0 0 chr1 111218862 111218905 -131445448 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr1 111219142 111219166 -131445187 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr1 111219402 111219452 -131444901 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr1 111219599 111219627 -131444726 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr1 111222098 111222123 -131442230 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 561 330 117 20 chr1 111222179 111222760 -131441593 + L2 LINE L2 2597 3267 -5 2151 131 18 12 chr1 111222847 111223182 -131441171 + MER1B DNA MER1_type 1 337 0 2326 87 6 13 chr1 111224492 111224804 -131439549 + AluSq SINE Alu 4 313 0 978 201 14 61 chr1 111325307 111325586 -131338767 - L1MD3 LINE L1 -937 7058 6793 579 245 163 5 chr1 111325586 111325770 -131338583 - L1ME LINE L1 -375 5791 5579 315 20 0 59 chr1 111325805 111325856 -131338497 - L1PA6 LINE L1 0 6154 6107 293 90 0 0 chr1 111325856 111325894 -131338459 + L1PA8A LINE L1 5674 5714 -417 1152 219 55 68 chr1 111325905 111326364 -131337989 - L1ME LINE L1 -1031 5115 4661 458 129 94 0 chr1 111326364 111326449 -131337904 + L1MA8 LINE L1 6197 6289 -2 1152 219 55 68 chr1 111326449 111326460 -131337893 - L1ME LINE L1 -1485 4661 4651 297 354 88 0 chr1 111326789 111326936 -131337417 + MIR SINE MIR 27 186 -76 28 0 0 0 chr1 111327471 111327499 -131336854 + AT_rich Low_complexity Low_complexity 1 28 0 236 345 62 0 chr1 111327940 111328053 -131336300 + LTR16C LTR ERVL 1 120 -371 430 276 134 41 chr1 111328160 111328607 -131335746 - L1ME3A LINE L1 -200 5970 5487 298 346 58 0 chr1 111328604 111328760 -131335593 - L1ME3A LINE L1 -1239 4907 4743 * 304 291 80 4 chr1 111328809 111329046 -131335307 - L1ME3A LINE L1 -1560 4586 4332 754 297 30 27 chr1 111329070 111329440 -131334913 - L1ME3A LINE L1 -1924 4222 3852 24 0 0 0 chr1 111329451 111329475 -131334878 + AT_rich Low_complexity Low_complexity 1 24 0 475 254 71 25 chr1 111329529 111329726 -131334627 + MLT1K LTR MaLR 357 562 -26 21 0 0 0 chr1 111329921 111329942 -131334411 + AT_rich Low_complexity Low_complexity 1 21 0 793 284 52 23 chr1 111330121 111330466 -131333887 - L1MC4a LINE L1 -1885 5923 5569 516 304 37 19 chr1 111330583 111330797 -131333556 - L1ME1 LINE L1 -3 6232 6015 1657 151 93 22 chr1 111330815 111331127 -131333226 + MER47A DNA MER2_type 33 366 0 1611 273 56 14 chr1 111331139 111331733 -131332620 - L1ME1 LINE L1 -226 6007 5389 1017 251 33 33 chr1 111331846 111332272 -131332081 - L1ME1 LINE L1 -3611 2604 2179 446 221 210 11 chr1 111332325 111332506 -131331847 - L1ME1 LINE L1 -4333 2063 1847 628 272 31 7 chr1 111332512 111332744 -131331609 + L1M4 LINE L1 4013 4249 -1897 35 24 0 0 chr1 111332826 111332868 -131331485 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr1 111333579 111333615 -131330738 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 111333941 111333962 -131330391 + AT_rich Low_complexity Low_complexity 1 21 0 620 248 124 22 chr1 111334057 111334283 -131330070 + MIR SINE MIR 2 250 -12 416 276 90 7 chr1 111334386 111334531 -131329822 - L2 LINE L2 -3 3310 3154 342 45 0 0 chr1 111334564 111334608 -131329745 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1134 205 32 35 chr1 111334611 111334894 -131329459 - AluJo SINE Alu -30 282 1 1347 215 61 16 chr1 111334911 111335222 -131329131 - MER58B DNA MER1_type -15 326 2 234 383 54 20 chr1 111335224 111335373 -131328980 - L2 LINE L2 -224 3089 2936 383 293 169 22 chr1 111335390 111335615 -131328738 - MIR SINE MIR 0 262 5 297 374 41 12 chr1 111335978 111336149 -131328204 - MER5B DNA MER1_type -1 177 2 268 338 22 15 chr1 111336218 111336354 -131327999 - L2 LINE L2 -939 2375 2239 812 339 121 71 chr1 111337246 111338128 -131326225 - HAL1 LINE L1 0 2507 1582 1193 269 77 21 chr1 111338249 111338628 -131325725 - L2 LINE L2 -2388 926 527 2241 135 5 27 chr1 111338632 111339003 -131325350 - THE1B LTR MaLR -1 363 1 10252 115 50 3 chr1 111339003 111340512 -131323841 - THE1B-int LTR MaLR 0 1580 1 2111 126 45 28 chr1 111340512 111340870 -131323483 - THE1B LTR MaLR 0 364 1 540 337 45 10 chr1 111340882 111341081 -131323272 - L2 LINE L2 -2801 513 308 28 86 0 0 chr1 111341264 111341334 -131323019 + AT_rich Low_complexity Low_complexity 1 70 0 909 335 28 20 chr1 111341382 111341782 -131322571 + L2 LINE L2 1431 1833 -1481 2516 274 49 28 chr1 111342020 111343108 -131321245 - L1MEc LINE L1 -4099 2297 1187 320 73 0 0 chr1 111343208 111343249 -131321104 - Alu SINE Alu -261 41 1 814 265 102 3 chr1 111343249 111343543 -131320810 - L1MEc LINE L1 -1814 4401 4079 5450 98 10 32 chr1 111343662 111344485 -131319868 - L1PA15 LINE L1 -3 6162 5358 1440 290 126 26 chr1 111344504 111345545 -131318808 - L1MEc LINE L1 -2143 4072 2928 1420 187 18 22 chr1 111345545 111345818 -131318535 + MLT2C2 LTR ERVL 1 272 -192 533 165 19 10 chr1 111345837 111345940 -131318413 + Tigger2 DNA MER2_type 2 105 -2613 4679 170 15 37 chr1 111345946 111346815 -131317538 - L1PB4 LINE L1 0 6156 5270 2270 116 3 0 chr1 111346815 111347126 -131317227 - AluSq SINE Alu -1 312 1 4679 170 15 37 chr1 111347126 111347317 -131317036 - L1PB4 LINE L1 -886 5270 5076 396 0 0 0 chr1 111347317 111347361 -131316992 + (TG)n Simple_repeat Simple_repeat 1 44 0 4679 170 15 37 chr1 111347361 111348072 -131316281 - L1PB4 LINE L1 -1080 5076 4407 7429 165 24 51 chr1 111348077 111348328 -131316025 + Tigger2 DNA MER2_type 87 343 -2375 11628 143 19 16 chr1 111348328 111350705 -131313648 + L1PA10 LINE L1 3372 5783 -385 2242 103 0 13 chr1 111350705 111351015 -131313338 + AluSg SINE Alu 1 306 -4 11628 143 19 16 chr1 111351015 111351401 -131312952 + L1PA10 LINE L1 5783 6167 -1 7429 165 24 51 chr1 111351401 111352154 -131312199 + Tigger2 DNA MER2_type 343 1115 -1603 1666 187 0 38 chr1 111352154 111352470 -131311883 + AluJo SINE Alu 1 304 -8 7429 165 24 51 chr1 111352470 111352848 -131311505 + Tigger2 DNA MER2_type 1115 1429 -1289 1344 223 10 31 chr1 111352848 111353139 -131311214 - AluJo SINE Alu -27 285 1 7429 165 24 51 chr1 111353139 111353232 -131311121 + Tigger2 DNA MER2_type 1429 1523 -1195 26499 42 40 2 chr1 111353242 111356613 -131307740 + L1PA2 LINE L1 12 3508 -2638 7560 25 1 3 chr1 111356613 111357625 -131306728 + L1PA2 LINE L1 5146 6155 0 7138 162 20 8 chr1 111357632 111358824 -131305529 + Tigger2 DNA MER2_type 1512 2718 0 301 160 0 0 chr1 111358824 111358871 -131305482 + MLT2C2 LTR ERVL 474 520 0 1415 228 30 32 chr1 111358872 111359307 -131305046 - L1MEc LINE L1 -3284 2931 2498 4458 111 14 8 chr1 111359340 111359597 -131304756 - L1MA2 LINE L1 0 6304 6048 2518 213 23 58 chr1 111359597 111360069 -131304284 - L1PA13 LINE L1 -117 6046 5627 1768 176 0 3 chr1 111360069 111360376 -131303977 - AluSx SINE Alu -6 306 1 2518 213 23 58 chr1 111360376 111360791 -131303562 - L1PA13 LINE L1 -536 5627 5199 247 250 11 22 chr1 111361908 111362000 -131302353 + (TA)n Simple_repeat Simple_repeat 1 91 0 323 259 60 26 chr1 111362444 111362560 -131301793 + MLT1I LTR MaLR 12 131 -278 612 290 84 5 chr1 111362692 111362906 -131301447 - MIR SINE MIR -25 237 7 1808 194 48 8 chr1 111362920 111363271 -131301082 + MLT1A1 LTR MaLR 1 365 0 2381 171 93 9 chr1 111364355 111364795 -131299558 + Tigger7 DNA MER2_type 96 572 -161 1785 53 0 0 chr1 111364806 111365031 -131299322 - L1PA5 LINE L1 -2 6152 5928 1341 110 29 0 chr1 111365033 111365242 -131299111 + Tigger7 DNA MER2_type 2276 2490 -1 2611 281 72 19 chr1 111365246 111366224 -131298129 - L1MEc LINE L1 -5331 1065 37 25 0 0 0 chr1 111366717 111366742 -131297611 + AT_rich Low_complexity Low_complexity 1 25 0 304 271 0 0 chr1 111367038 111367123 -131297230 - L1M4 LINE L1 -1318 4828 4744 1025 315 21 7 chr1 111367127 111367416 -131296937 + LTR16C LTR ERVL 199 491 0 870 298 0 21 chr1 111367592 111367871 -131296482 - L1ME1 LINE L1 -5 6161 5889 877 276 62 7 chr1 111368018 111368423 -131295930 - L1MEc LINE L1 -2673 3542 3116 2039 159 75 5 chr1 111368429 111368801 -131295552 + MSTA LTR MaLR 1 398 -30 757 95 0 0 chr1 111368801 111368906 -131295447 - AluY SINE Alu -180 131 27 1792 253 74 25 chr1 111369034 111369746 -131294607 - L1MEc LINE L1 -3113 3102 2356 26 30 0 0 chr1 111369814 111369847 -131294506 + AT_rich Low_complexity Low_complexity 1 33 0 670 257 130 11 chr1 111369847 111370217 -131294136 - L1MEc LINE L1 -4250 2146 1733 6506 122 15 16 chr1 111370231 111371255 -131293098 - L1P LINE L1 -4713 1433 411 292 243 81 40 chr1 111371383 111371531 -131292822 - L1M4 LINE L1 -3104 3042 2889 420 264 66 0 chr1 111371582 111371703 -131292650 - MER58A DNA MER1_type 0 140 12 4859 96 38 8 chr1 111371938 111372681 -131291672 - L1MA1 LINE L1 0 6302 5538 21 0 0 0 chr1 111372802 111372823 -131291530 + AT_rich Low_complexity Low_complexity 1 21 0 283 330 43 17 chr1 111373664 111373779 -131290574 + MER91C DNA MER1_type 22 139 -1 320 310 23 39 chr1 111373969 111374098 -131290255 + MIR SINE MIR 74 200 -62 198 71 0 0 chr1 111375876 111375904 -131288449 + (TA)n Simple_repeat Simple_repeat 2 29 0 1737 165 10 7 chr1 111376435 111376738 -131287615 - AluJo SINE Alu -2 310 7 225 0 0 0 chr1 111376852 111376877 -131287476 + (T)n Simple_repeat Simple_repeat 1 25 0 242 356 63 57 chr1 111377425 111377866 -131286487 - L2 LINE L2 -446 2868 2425 873 278 100 14 chr1 111378742 111379173 -131285180 - MER113 DNA MER1_type? -4 517 50 326 365 167 14 chr1 111379271 111379619 -131284734 + L2 LINE L2 2872 3272 0 564 112 0 0 chr1 111379720 111379809 -131284544 + L1MB3 LINE L1 6087 6175 -8 21 36 0 0 chr1 111379837 111379865 -131284488 + AT_rich Low_complexity Low_complexity 1 28 0 1670 31 0 0 chr1 111380268 111380462 -131283891 - L1PA3 LINE L1 -3 6152 5959 2625 8 0 0 chr1 111380462 111380812 -131283541 + L1P1 LINE L1 5209 5558 -597 27 0 0 0 chr1 111380812 111380839 -131283514 + AT_rich Low_complexity Low_complexity 1 27 0 459 249 93 34 chr1 111381428 111381633 -131282720 + L2 LINE L2 3096 3312 -1 24 0 0 0 chr1 111381681 111381705 -131282648 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr1 111381913 111381951 -131282402 + AT_rich Low_complexity Low_complexity 1 38 0 30 89 0 0 chr1 111382008 111382087 -131282266 + AT_rich Low_complexity Low_complexity 1 79 0 2356 100 0 0 chr1 111382189 111382489 -131281864 - AluSc SINE Alu -8 301 2 1868 174 0 0 chr1 111382551 111382861 -131281492 - AluSx SINE Alu -2 310 1 360 329 77 74 chr1 111383085 111383383 -131280970 + HAL1 LINE L1 1 299 -2208 21 0 0 0 chr1 111383439 111383460 -131280893 + AT_rich Low_complexity Low_complexity 1 21 0 3324 148 36 43 chr1 111384427 111385102 -131279251 + L1MA4 LINE L1 5623 6292 -8 21 36 0 0 chr1 111385103 111385131 -131279222 + AT_rich Low_complexity Low_complexity 1 28 0 254 279 12 58 chr1 111386271 111386357 -131277996 + MIR SINE MIR 28 109 -153 6061 69 2 6 chr1 111386493 111387305 -131277048 + L1PA7 LINE L1 5346 6154 0 506 30 30 0 chr1 111387309 111387376 -131276977 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 357 312 133 20 chr1 111387933 111388234 -131276119 + L1M4 LINE L1 4493 4827 -1319 403 322 135 10 chr1 111388255 111388463 -131275890 - MIR SINE MIR -16 246 13 1919 215 35 35 chr1 111388493 111389015 -131275338 + Charlie1b DNA MER1_type 1 522 -1 273 250 33 17 chr1 111389345 111389465 -131274888 + (TA)n Simple_repeat Simple_repeat 1 122 0 448 234 48 24 chr1 111389475 111389599 -131274754 + Charlie1 DNA MER1_type 37 163 -2598 2088 108 3 20 chr1 111389935 111390232 -131274121 - AluSg SINE Alu -18 292 1 1528 197 33 7 chr1 111390232 111390531 -131273822 - AluJb SINE Alu -5 307 1 302 233 82 38 chr1 111390665 111390824 -131273529 + L1ME4a LINE L1 5939 6104 -17 21 82 0 0 chr1 111391081 111391130 -131273223 + AT_rich Low_complexity Low_complexity 1 49 0 2176 144 41 6 chr1 111392440 111392802 -131271551 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr1 111393000 111393024 -131271329 + AT_rich Low_complexity Low_complexity 1 24 0 226 263 81 10 chr1 111393127 111393226 -131271127 + L1MC/D LINE L1 5614 5719 -2089 202 180 66 0 chr1 111393353 111393414 -131270939 + (TATAA)n Simple_repeat Simple_repeat 3 67 0 1725 122 86 43 chr1 111393415 111393693 -131270660 + AluSx SINE Alu 1 290 -22 282 300 45 27 chr1 111394156 111394266 -131270087 + L2 LINE L2 3137 3248 -24 21 57 0 0 chr1 111394277 111394312 -131270041 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr1 111394382 111394415 -131269938 + AT_rich Low_complexity Low_complexity 1 33 0 1658 189 11 0 chr1 111394534 111394848 -131269505 - AluJo SINE Alu 0 317 1 239 347 31 20 chr1 111394983 111395081 -131269272 + MIR SINE MIR 30 128 -80 2672 158 8 1 chr1 111395153 111395578 -131268775 - MSTA LTR MaLR -2 416 3 271 296 0 0 chr1 111396276 111396374 -131267979 + L1ME LINE L1 39 136 -6260 2226 295 29 10 chr1 111396375 111397196 -131267157 + L1ME LINE L1 172 1008 -5388 6071 60 158 69 chr1 111397196 111398276 -131266077 + MER11A LTR ERVK 1 1266 0 686 304 61 7 chr1 111398288 111398729 -131265624 + L1ME LINE L1 1012 1476 -4920 322 91 146 0 chr1 111398731 111398786 -131265567 + MSTB1 LTR MaLR 1 63 -394 844 162 7 0 chr1 111398797 111398933 -131265420 + FAM SINE Alu 21 157 -28 210 91 0 0 chr1 111398933 111398966 -131265387 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1150 174 51 0 chr1 111398978 111399174 -131265179 + MSTB1 LTR MaLR 41 246 -186 270 206 15 29 chr1 111399183 111399251 -131265102 + L1ME LINE L1 2738 2804 -3411 * 694 263 20 25 chr1 111399247 111399495 -131264858 + L1ME LINE L1 5389 5628 -624 791 313 163 6 chr1 111400243 111400575 -131263778 - L2 LINE L2 -3 3310 2927 21261 167 23 17 chr1 111400596 111404042 -131260311 - L1MA3 LINE L1 0 7724 4300 1812 159 38 30 chr1 111404042 111404414 -131259939 + THE1C LTR MaLR 1 375 0 21261 167 23 17 chr1 111404414 111405195 -131259158 - L1MA3 LINE L1 -3424 4300 3525 186 43 0 0 chr1 111405195 111405218 -131259135 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 21261 167 23 17 chr1 111405218 111408634 -131255719 - L1MA3 LINE L1 -4199 3525 16 827 308 170 39 chr1 111408634 111409170 -131255183 - L2 LINE L2 -396 2918 2313 1723 280 47 6 chr1 111409770 111410285 -131254068 - L2 LINE L2 -995 2319 1784 5642 67 21 16 chr1 111410297 111411087 -131253266 + SVA Other Other 1 794 -592 387 41 0 0 chr1 111411734 111411783 -131252570 + (CA)n Simple_repeat Simple_repeat 2 50 0 28 0 0 0 chr1 111411874 111411902 -131252451 + AT_rich Low_complexity Low_complexity 1 28 0 892 209 150 47 chr1 111412354 111412713 -131251640 + MSTD LTR MaLR 1 396 0 6921 62 6 38 chr1 111413077 111414157 -131250196 + SVA Other Other 433 1384 -2 998 281 60 34 chr1 111414182 111414566 -131249787 + L2 LINE L2 2154 2547 -767 453 325 31 21 chr1 111414584 111414778 -131249575 + L2 LINE L2 3117 3312 -1 500 194 22 8 chr1 111414831 111414965 -131249388 - L1MA4 LINE L1 0 6482 6347 13983 209 38 19 chr1 111414965 111419218 -131245135 - L1MA4 LINE L1 -648 5834 1462 1717 159 55 7 chr1 111419218 111419508 -131244845 - AluSq SINE Alu -1 312 9 13983 209 38 19 chr1 111419508 111420214 -131244139 - L1MA4 LINE L1 -5020 1462 771 3415 237 13 1 chr1 111420243 111420935 -131243418 - L1MA4 LINE L1 -4618 710 11 25 0 0 0 chr1 111421009 111421034 -131243319 + AT_rich Low_complexity Low_complexity 1 25 0 602 258 8 0 chr1 111421041 111421173 -131243180 - FLAM_A SINE Alu 0 133 1 1193 190 70 140 chr1 111421265 111421850 -131242503 - LTR48 LTR ERV1 -48 739 4 273 119 0 0 chr1 111422346 111422388 -131241965 + (TA)n Simple_repeat Simple_repeat 2 43 0 4352 128 30 17 chr1 111423689 111424391 -131239962 - MER50 LTR ERV1 -23 711 1 4192 77 277 0 chr1 111424429 111425076 -131239277 + LTR12 LTR ERV1 1 826 0 2520 214 68 40 chr1 111425801 111426759 -131237594 + L1MDa LINE L1 1005 1989 -4551 601 255 89 85 chr1 111427014 111427531 -131236822 - MLT1G1 LTR MaLR -19 523 18 1371 192 89 65 chr1 111427616 111428044 -131236309 - LTR8A LTR ERV1 -2 725 288 1018 183 12 166 chr1 111428146 111428188 -131236165 - LTR8 LTR ERV1 -430 261 214 1995 149 30 33 chr1 111428188 111428551 -131235802 - THE1B LTR MaLR 0 364 3 1018 183 12 166 chr1 111428551 111428800 -131235553 - LTR8 LTR ERV1 -477 214 1 281 386 0 0 chr1 111429263 111429364 -131234989 - MLT1-int LTR MaLR -509 862 762 1814 167 26 10 chr1 111430045 111430350 -131234003 - AluJo SINE Alu -2 310 1 204 388 94 0 chr1 111430563 111430648 -131233705 - L2 LINE L2 -216 3097 3005 248 250 78 0 chr1 111431082 111431146 -131233207 + L2 LINE L2 3245 3313 0 715 213 14 66 chr1 111431681 111431892 -131232461 + MER3 DNA MER1_type 10 209 0 3563 136 6 43 chr1 111431899 111432525 -131231828 + LTR26 LTR ERV1 1 603 0 585 291 36 109 chr1 111432556 111432989 -131231364 + L2 LINE L2 2897 3297 -16 2028 156 0 0 chr1 111432989 111433296 -131231057 + AluSx SINE Alu 1 307 -5 585 291 36 109 chr1 111433296 111433312 -131231041 + L2 LINE L2 3297 3313 0 200 400 17 0 chr1 111433437 111433552 -131230801 - L2 LINE L2 -285 2987 2871 192 77 0 0 chr1 111434565 111434591 -131229762 + (A)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr1 111435458 111435489 -131228864 + AT_rich Low_complexity Low_complexity 1 31 0 1821 176 0 0 chr1 111436128 111436412 -131227941 + AluSx SINE Alu 4 287 -25 27 0 0 0 chr1 111436412 111436439 -131227914 + AT_rich Low_complexity Low_complexity 1 27 0 462 214 19 0 chr1 111437461 111437564 -131226789 + MER94 DNA DNA 19 123 -11 1295 252 53 17 chr1 111438176 111438537 -131225816 + MER87 LTR ERV1 168 541 0 21 36 0 0 chr1 111439206 111439234 -131225119 + AT_rich Low_complexity Low_complexity 1 28 0 528 294 85 14 chr1 111440640 111440851 -131223502 + MIR SINE MIR 37 262 0 1963 95 4 0 chr1 111441008 111441270 -131223083 + AluSx SINE Alu 49 311 -1 24 0 0 0 chr1 111441305 111441329 -131223024 + AT_rich Low_complexity Low_complexity 1 24 0 579 228 16 1 chr1 111441362 111441515 -131222838 + L1ME1 LINE L1 6021 6184 0 2025 144 0 13 chr1 111442656 111442969 -131221384 + AluSx SINE Alu 1 309 -3 357 24 0 0 chr1 111443972 111444014 -131220339 + (ATG)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr1 111445060 111445089 -131219264 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 111446238 111446259 -131218094 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 111446617 111446650 -131217703 + AT_rich Low_complexity Low_complexity 1 33 0 514 293 0 37 chr1 111448138 111448326 -131216027 - MIR SINE MIR -34 228 48 569 303 71 62 chr1 111448722 111449046 -131215307 + Charlie8 DNA MER1_type 1 272 -2145 213 310 80 126 chr1 111449585 111449930 -131214423 + L2 LINE L2 2926 3255 -17 2123 101 0 52 chr1 111449930 111450236 -131214117 + AluSx SINE Alu 1 290 -22 213 310 80 126 chr1 111450236 111450254 -131214099 + L2 LINE L2 3255 3272 0 236 279 35 0 chr1 111450420 111450506 -131213847 + (TATATG)n Simple_repeat Simple_repeat 4 92 0 509 235 175 15 chr1 111450764 111450964 -131213389 - L1ME3A LINE L1 0 6170 5939 32 43 0 0 chr1 111451056 111451102 -131213251 + AT_rich Low_complexity Low_complexity 1 46 0 1780 143 118 62 chr1 111452042 111452447 -131211906 - MSTA LTR MaLR 0 428 1 321 211 21 0 chr1 111453093 111453188 -131211165 + (TA)n Simple_repeat Simple_repeat 1 97 0 1834 179 27 6 chr1 111453199 111453535 -131210818 - MER7A DNA MER2_type -5 341 1 190 178 178 0 chr1 111453997 111454042 -131210311 + L2 LINE L2 3259 3311 -2 682 199 7 20 chr1 111454398 111454544 -131209809 + FRAM SINE Alu 3 146 -30 24 0 0 0 chr1 111454878 111454902 -131209451 + AT_rich Low_complexity Low_complexity 1 24 0 223 316 26 0 chr1 111457985 111458061 -131206292 + CT-rich Low_complexity Low_complexity 3 80 0 351 127 13 25 chr1 111459006 111459085 -131205268 + CT-rich Low_complexity Low_complexity 2 79 0 279 79 0 0 chr1 111459085 111459123 -131205230 + (TG)n Simple_repeat Simple_repeat 1 38 0 228 284 28 64 chr1 111459242 111459351 -131205002 + MIR SINE MIR 154 258 -4 463 293 33 37 chr1 111459642 111459857 -131204496 - MIR SINE MIR -45 217 4 2119 114 3 0 chr1 111460123 111460420 -131203933 + AluSc SINE Alu 3 300 -9 248 286 55 44 chr1 111462580 111462671 -131201682 + L3 LINE CR1 1365 1456 -121 358 360 69 25 chr1 111462753 111462956 -131201397 + L2 LINE L2 3100 3311 -2 223 298 0 18 chr1 111462952 111463009 -131201344 + L3 LINE CR1 1515 1570 -7 * 326 233 224 26 chr1 111463288 111463404 -131200949 - L2 LINE L2 0 3272 3134 1258 275 103 27 chr1 111463738 111464214 -131200139 - LTR33 LTR ERVL 0 521 10 180 0 0 0 chr1 111464918 111464938 -131199415 + (A)n Simple_repeat Simple_repeat 1 20 0 319 219 0 24 chr1 111465260 111465342 -131199011 + MIR SINE MIR 86 165 -97 289 238 220 19 chr1 111466610 111466779 -131197574 + MIR SINE MIR 30 230 -32 21 0 0 0 chr1 111470493 111470514 -131193839 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 111471753 111471792 -131192561 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr1 111471860 111471902 -131192451 + AT_rich Low_complexity Low_complexity 1 42 0 1524 181 0 0 chr1 111474679 111474939 -131189414 + AluSx SINE Alu 40 299 -13 717 302 48 8 chr1 111475691 111475943 -131188410 - MIR SINE MIR 0 262 1 22 0 0 0 chr1 111476106 111476128 -131188225 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 111476498 111476526 -131187827 + AT_rich Low_complexity Low_complexity 1 28 0 320 282 35 0 chr1 111476843 111476928 -131187425 - MER5A DNA MER1_type -101 88 1 1455 178 3 65 chr1 111477066 111477358 -131186995 + AluJo SINE Alu 2 275 -37 1122 83 0 22 chr1 111477363 111477543 -131186810 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 1720 185 3 6 chr1 111477683 111478024 -131186329 - L1PB4 LINE L1 -1698 4448 4109 * 4845 164 63 38 chr1 111478023 111479691 -131184662 + L1PB4 LINE L1 4419 6154 -2 459 325 0 0 chr1 111479961 111480087 -131184266 - MIR SINE MIR -126 136 11 1776 48 0 4 chr1 111480537 111480764 -131183589 - L1P LINE L1 -1323 4823 4598 1695 63 71 8 chr1 111480764 111481002 -131183351 + L1PA5 LINE L1 5896 6149 -5 366 306 87 36 chr1 111481273 111481548 -131182805 + L1ME LINE L1 5326 5614 -507 306 0 0 0 chr1 111481770 111481804 -131182549 + (CA)n Simple_repeat Simple_repeat 1 34 0 1529 196 52 25 chr1 111481934 111482418 -131181935 - L1 LINE L1 -2720 3426 2930 652 158 17 0 chr1 111482436 111482556 -131181797 - L1MC1 LINE L1 -253 6080 5959 240 86 0 0 chr1 111482561 111482596 -131181757 + (TG)n Simple_repeat Simple_repeat 2 36 0 266 306 86 40 chr1 111482640 111483013 -131181340 - L1MEc LINE L1 -2504 4036 3647 5555 153 17 9 chr1 111483220 111483711 -131180642 - L1MC1 LINE L1 0 6333 5830 414 0 0 0 chr1 111483711 111483757 -131180596 + (TG)n Simple_repeat Simple_repeat 1 46 0 5555 153 17 9 chr1 111483757 111484218 -131180135 - L1MC1 LINE L1 -503 5830 5374 1811 249 28 55 chr1 111484223 111484587 -131179766 - L1MEc LINE L1 -3218 3322 2983 1860 108 108 0 chr1 111484587 111484864 -131179489 - AluSq SINE Alu -6 307 1 1811 249 28 55 chr1 111484864 111485171 -131179182 - L1MEc LINE L1 -3557 2983 2669 687 161 0 34 chr1 111485171 111485289 -131179064 - FRAM SINE Alu -14 162 49 1995 151 3 3 chr1 111485299 111485604 -131178749 - AluSx SINE Alu -7 305 1 513 230 33 20 chr1 111485604 111485746 -131178607 - L1MEc LINE L1 -4002 2719 2573 566 271 19 29 chr1 111485891 111486098 -131178255 - L1MEc LINE L1 -6122 418 214 1679 208 18 9 chr1 111486144 111486480 -131177873 + MLT1A1 LTR MaLR 24 362 -3 469 254 147 34 chr1 111486492 111486669 -131177684 - L1MEc LINE L1 -6330 210 14 196 226 0 57 chr1 111487128 111487181 -131177172 + L2 LINE L2 3248 3297 -16 372 310 185 15 chr1 111487795 111488205 -131176148 - L2 LINE L2 -925 2389 1910 209 250 0 0 chr1 111488874 111488922 -131175431 - L2 LINE L2 0 3313 3266 274 209 21 50 chr1 111489392 111489491 -131174862 + MER5A DNA MER1_type 85 189 0 360 324 56 34 chr1 111489617 111489796 -131174557 + MIR SINE MIR 8 190 -72 247 362 92 0 chr1 111490539 111490691 -131173662 + MIR SINE MIR 47 212 -50 186 43 0 0 chr1 111492554 111492577 -131171776 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 203 321 130 8 chr1 111493719 111493850 -131170503 - MIR SINE MIR -68 194 48 21 0 0 0 chr1 111494067 111494088 -131170265 + AT_rich Low_complexity Low_complexity 1 21 0 198 244 0 0 chr1 111494142 111494183 -131170170 - L2 LINE L2 -5 3308 3268 948 254 145 14 chr1 111494252 111494610 -131169743 + L1ME2 LINE L1 5357 5761 -403 1533 195 20 20 chr1 111494617 111494960 -131169393 + L1ME2 LINE L1 5822 6164 0 424 263 19 19 chr1 111496264 111496424 -131167929 - MER103 DNA DNA -2 164 5 357 123 0 0 chr1 111496581 111496646 -131167707 + (TG)n Simple_repeat Simple_repeat 2 66 0 520 259 109 11 chr1 111496653 111496827 -131167526 + MLT1J LTR MaLR 7 197 -314 431 285 86 21 chr1 111496856 111497042 -131167311 + MLT1J2 LTR MaLR 252 449 -1 300 356 107 39 chr1 111497201 111497406 -131166947 + MIR SINE MIR 10 228 -34 497 301 43 23 chr1 111497423 111497730 -131166623 + MLT1I LTR MaLR 2 354 -55 24 32 0 0 chr1 111498450 111498481 -131165872 + AT_rich Low_complexity Low_complexity 1 31 0 453 50 0 0 chr1 111498493 111498553 -131165800 + (TA)n Simple_repeat Simple_repeat 2 61 0 249 196 0 0 chr1 111498584 111498630 -131165723 + MLT1-int LTR MaLR 808 853 -518 550 284 96 44 chr1 111498853 111499240 -131165113 + MLT1I LTR MaLR 1 407 -2 183 100 0 0 chr1 111499441 111499471 -131164882 + (TC)n Simple_repeat Simple_repeat 1 30 0 339 44 0 0 chr1 111499475 111499520 -131164833 + (TG)n Simple_repeat Simple_repeat 2 46 0 748 357 80 10 chr1 111499979 111500494 -131163859 + L3 LINE CR1 327 877 -700 235 316 216 5 chr1 111500548 111500738 -131163615 - MIR SINE MIR -10 252 23 547 350 66 45 chr1 111500896 111501365 -131162988 + L3 LINE CR1 1098 1576 -1 1795 225 101 8 chr1 111501391 111501888 -131162465 - MER90 LTR ERV1 0 614 72 33 30 0 45 chr1 111502095 111502161 -131162192 + AT_rich Low_complexity Low_complexity 1 63 0 207 0 0 0 chr1 111502639 111502662 -131161691 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 241 241 0 0 chr1 111502837 111502891 -131161462 + tRNA-Ile-ATT tRNA tRNA 6 59 -18 836 195 95 43 chr1 111504234 111504465 -131159888 - MIR SINE MIR -6 256 14 260 276 187 44 chr1 111505082 111505285 -131159068 + MIR SINE MIR 12 243 -19 376 109 0 0 chr1 111505769 111505824 -131158529 - L1 LINE L1 -2708 3438 3384 * 2176 283 48 40 chr1 111505821 111506682 -131157671 - L1MCb LINE L1 -5132 913 43 186 43 0 0 chr1 111506682 111506705 -131157648 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2176 283 48 40 chr1 111506705 111506747 -131157606 - L1MCb LINE L1 -6002 43 3 210 128 0 0 chr1 111507128 111507167 -131157186 + (TG)n Simple_repeat Simple_repeat 2 40 0 610 312 61 30 chr1 111507560 111507967 -131156386 - L1ME LINE L1 -426 5736 5317 527 217 116 8 chr1 111507982 111508111 -131156242 + MLT1F1 LTR MaLR 5 147 -420 429 242 0 11 chr1 111509110 111509205 -131155148 + MLT1K LTR MaLR 491 584 -4 313 336 48 77 chr1 111510365 111510573 -131153780 - MIR SINE MIR 0 262 61 6379 181 19 5 chr1 111510717 111511948 -131152405 - L1P LINE L1 -916 5230 3983 353 278 112 68 chr1 111511990 111512195 -131152158 + L1ME LINE L1 5521 5734 -387 330 26 0 0 chr1 111513078 111513117 -131151236 + (ATG)n Simple_repeat Simple_repeat 3 41 0 22 35 0 0 chr1 111514163 111514192 -131150161 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 111515342 111515363 -131148990 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 111515721 111515754 -131148599 + AT_rich Low_complexity Low_complexity 1 33 0 499 298 0 37 chr1 111517242 111517430 -131146923 - MIR SINE MIR -34 228 48 569 303 71 62 chr1 111517826 111518150 -131146203 + Charlie8 DNA MER1_type 1 272 -2145 213 310 80 126 chr1 111518689 111519034 -131145319 + L2 LINE L2 2926 3255 -17 2123 101 0 52 chr1 111519034 111519340 -131145013 + AluSx SINE Alu 1 290 -22 213 310 80 126 chr1 111519340 111519358 -131144995 + L2 LINE L2 3255 3272 0 236 279 35 0 chr1 111519524 111519610 -131144743 + (TATATG)n Simple_repeat Simple_repeat 4 92 0 509 235 175 15 chr1 111519868 111520068 -131144285 - L1ME3A LINE L1 0 6170 5939 32 43 0 0 chr1 111520160 111520206 -131144147 + AT_rich Low_complexity Low_complexity 1 46 0 1403 87 6 0 chr1 111520509 111520692 -131143661 + LTR12 LTR ERV1 87 270 -444 349 238 42 0 chr1 111520692 111520797 -131143556 + LTR30 LTR ERV1 544 642 -80 1900 65 0 0 chr1 111520802 111521033 -131143320 + LTR12 LTR ERV1 484 714 0 2583 218 66 39 chr1 111521758 111522717 -131141636 + L1MDa LINE L1 1005 1989 -4551 612 253 89 85 chr1 111522972 111523489 -131140864 - MLT1G1 LTR MaLR -19 523 18 1370 199 86 63 chr1 111523574 111524002 -131140351 - LTR8A LTR ERV1 -2 725 288 996 182 12 165 chr1 111524104 111524146 -131140207 - LTR8 LTR ERV1 -462 229 182 1954 152 30 33 chr1 111524146 111524509 -131139844 - THE1B LTR MaLR 0 364 3 996 182 12 165 chr1 111524509 111524758 -131139595 - LTR8 LTR ERV1 -509 182 1 281 386 0 0 chr1 111525221 111525322 -131139031 - MLT1-int LTR MaLR -509 862 762 1775 173 26 10 chr1 111526000 111526306 -131138047 - AluJo SINE Alu -1 311 1 204 388 94 0 chr1 111526519 111526604 -131137749 - L2 LINE L2 -216 3097 3005 232 266 78 0 chr1 111527038 111527102 -131137251 + L2 LINE L2 3245 3313 0 715 213 14 66 chr1 111527637 111527848 -131136505 + MER3 DNA MER1_type 10 209 0 3590 134 6 42 chr1 111527855 111528480 -131135873 + LTR26 LTR ERV1 1 603 0 597 291 31 106 chr1 111528511 111528945 -131135408 + L2 LINE L2 2897 3297 -16 2046 154 0 0 chr1 111528945 111529250 -131135103 + AluSx SINE Alu 1 305 -7 597 291 31 106 chr1 111529250 111529266 -131135087 + L2 LINE L2 3297 3313 0 200 400 17 0 chr1 111529391 111529506 -131134847 - L2 LINE L2 -285 2987 2871 192 77 0 0 chr1 111530519 111530545 -131133808 + (A)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr1 111531412 111531443 -131132910 + AT_rich Low_complexity Low_complexity 1 31 0 1870 179 0 0 chr1 111532082 111532365 -131131988 + AluSx SINE Alu 4 289 -23 387 0 0 0 chr1 111532365 111532408 -131131945 + (TA)n Simple_repeat Simple_repeat 1 43 0 1870 179 0 0 chr1 111532408 111532425 -131131928 + AluSx SINE Alu 288 304 -8 453 223 19 0 chr1 111533447 111533550 -131130803 + MER94 DNA DNA 19 123 -11 1295 252 53 17 chr1 111534161 111534522 -131129831 + MER87 LTR ERV1 168 541 0 21 36 0 0 chr1 111535192 111535220 -131129133 + AT_rich Low_complexity Low_complexity 1 28 0 527 294 85 14 chr1 111536626 111536837 -131127516 + MIR SINE MIR 37 262 0 1942 103 4 0 chr1 111536994 111537256 -131127097 + AluSx SINE Alu 49 311 -1 24 0 0 0 chr1 111537291 111537315 -131127038 + AT_rich Low_complexity Low_complexity 1 24 0 573 228 16 1 chr1 111537348 111537501 -131126852 + L1ME1 LINE L1 6021 6184 0 2027 147 0 13 chr1 111538642 111538955 -131125398 + AluSx SINE Alu 1 309 -3 330 26 0 0 chr1 111539958 111539997 -131124356 + (ATG)n Simple_repeat Simple_repeat 3 41 0 5438 126 23 1 chr1 111540520 111541432 -131122921 + L1PA13 LINE L1 5221 6151 -12 22 35 0 0 chr1 111541526 111541555 -131122798 + AT_rich Low_complexity Low_complexity 1 29 0 1694 198 6 10 chr1 111541799 111542112 -131122241 + AluJo SINE Alu 1 312 0 216 226 65 0 chr1 111542115 111542177 -131122176 + MIR SINE MIR 183 248 -14 402 21 0 0 chr1 111542620 111542667 -131121686 + (CA)n Simple_repeat Simple_repeat 2 48 0 607 336 85 0 chr1 111542707 111542918 -131121435 + MIR SINE MIR 8 236 -26 311 280 65 38 chr1 111542995 111543153 -131121200 + L1MEc LINE L1 2060 2225 -4171 261 0 0 0 chr1 111543153 111543182 -131121171 + (CA)n Simple_repeat Simple_repeat 2 30 0 311 280 65 38 chr1 111543182 111543209 -131121144 + L1MEc LINE L1 2225 2250 -4146 337 390 17 66 chr1 111543224 111543586 -131120767 - L1MEd LINE L1 -5502 617 274 408 265 20 10 chr1 111543686 111543784 -131120569 - MER5A DNA MER1_type -77 112 14 299 234 127 51 chr1 111543832 111543990 -131120363 - L1MEd LINE L1 -5908 211 42 21 0 0 0 chr1 111544392 111544413 -131119940 + AT_rich Low_complexity Low_complexity 1 21 0 1846 132 0 4 chr1 111545373 111545646 -131118707 + AluSg SINE Alu 39 310 0 22 70 0 0 chr1 111547681 111547724 -131116629 + AT_rich Low_complexity Low_complexity 1 43 0 356 342 17 8 chr1 111549567 111549684 -131114669 - MIR3 SINE MIR -10 198 81 267 90 15 45 chr1 111550325 111550392 -131113961 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 559 257 93 49 chr1 111550400 111550583 -131113770 - MER58A DNA MER1_type -32 192 2 3697 150 56 43 chr1 111550761 111551596 -131112757 + L1MA6 LINE L1 5455 6300 0 484 320 99 14 chr1 111551628 111552135 -131112218 + L2 LINE L2 2677 3300 -13 402 85 0 0 chr1 111552140 111552199 -131112154 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 2097 215 25 29 chr1 111552591 111553075 -131111278 - MLT1D LTR MaLR -2 503 22 575 303 91 25 chr1 111553171 111553445 -131110908 + L2 LINE L2 3017 3308 -5 464 168 147 21 chr1 111553508 111553603 -131110750 + MER21A LTR ERV1 393 576 -355 257 204 0 0 chr1 111553904 111553953 -131110400 - Tigger5 DNA MER2_type -35 2288 2240 * 299 281 0 0 chr1 111553936 111554018 -131110335 + Tigger5 DNA MER2_type 2239 2320 -3 * 419 190 13 13 chr1 111554018 111554096 -131110257 - Tigger5 DNA MER2_type -2245 78 1 353 266 154 24 chr1 111555702 111555871 -131108482 - MIR3 SINE MIR -12 196 6 1048 187 4 67 chr1 111556033 111556258 -131108095 + AluJo SINE Alu 1 211 -101 353 266 154 24 chr1 111557234 111557403 -131106950 - MIR3 SINE MIR -12 196 6 1641 179 3 52 chr1 111557565 111557890 -131106463 + AluJo SINE Alu 1 309 -3 364 333 57 0 chr1 111558197 111558320 -131106033 + L2 LINE L2 3184 3313 0 24 0 0 0 chr1 111559419 111559443 -131104910 + AT_rich Low_complexity Low_complexity 1 24 0 2068 130 0 0 chr1 111559443 111559728 -131104625 - AluSx SINE Alu -27 285 1 235 222 9 114 chr1 111562949 111563064 -131101289 + MER5A DNA MER1_type 4 119 -70 240 270 16 32 chr1 111563423 111563486 -131100867 - L2 LINE L2 -1 3271 3210 2417 70 3 0 chr1 111563547 111563848 -131100505 + AluY SINE Alu 1 302 -9 757 191 0 0 chr1 111564755 111564891 -131099462 + FLAM_C SINE Alu 5 140 -3 211 226 0 123 chr1 111565409 111565515 -131098838 + L2 LINE L2 3180 3272 0 200 204 167 0 chr1 111565741 111565795 -131098558 + MIR SINE MIR 116 178 -84 1989 143 0 3 chr1 111565956 111566243 -131098110 + AluSx SINE Alu 1 286 -26 207 100 0 0 chr1 111566252 111566282 -131098071 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 301 261 10 128 chr1 111567753 111567964 -131096389 + MIR SINE MIR 19 203 -59 613 310 126 28 chr1 111568131 111568560 -131095793 + L2 LINE L2 2841 3311 -2 23 0 0 0 chr1 111568754 111568777 -131095576 + AT_rich Low_complexity Low_complexity 1 23 0 242 299 246 8 chr1 111568904 111569038 -131095315 - MIR SINE MIR -48 214 49 753 250 149 4 chr1 111569310 111569538 -131094815 - MIR SINE MIR 0 262 2 21 0 0 0 chr1 111570688 111570709 -131093644 + AT_rich Low_complexity Low_complexity 1 21 0 375 242 84 118 chr1 111570920 111571098 -131093255 - MER5B DNA MER1_type 0 178 7 208 349 0 0 chr1 111571382 111571454 -131092899 + MIR SINE MIR 78 143 -65 221 281 24 24 chr1 111571678 111571760 -131092593 + MIR3 SINE MIR 118 199 -9 192 125 0 0 chr1 111571853 111571885 -131092468 + (TG)n Simple_repeat Simple_repeat 2 33 0 285 357 66 62 chr1 111572384 111572944 -131091409 + L2 LINE L2 1642 2203 -1111 1358 174 21 8 chr1 111573780 111574022 -131090331 + MLT2B1 LTR ERVL 2 246 -274 316 173 111 12 chr1 111574010 111574091 -131090262 + MLT2B1 LTR ERVL 427 515 0 * 674 247 105 38 chr1 111574434 111574673 -131089680 - MIR SINE MIR -2 260 6 309 316 79 53 chr1 111574693 111574883 -131089470 + MIR3 SINE MIR 9 203 -5 235 160 20 0 chr1 111575650 111575700 -131088653 + A-rich Low_complexity Low_complexity 5 55 0 1135 210 14 82 chr1 111577426 111577792 -131086561 - MER2 DNA MER2_type 0 344 4 345 239 30 75 chr1 111578384 111578518 -131085835 + L2 LINE L2 3186 3313 0 1264 193 0 14 chr1 111579965 111580188 -131084165 + Tigger3b DNA MER2_type 2 221 -1010 5637 128 16 66 chr1 111580254 111581336 -131083017 + Tigger3b DNA MER2_type 204 1231 0 1270 199 11 23 chr1 111581360 111581626 -131082727 - AluJo SINE Alu -49 263 1 1073 239 9 0 chr1 111582226 111582448 -131081905 - MER58A DNA MER1_type 0 224 1 304 399 33 56 chr1 111582547 111582850 -131081503 + L2 LINE L2 2969 3264 -8 447 157 22 0 chr1 111583989 111584078 -131080275 + MER53 DNA DNA 14 104 -85 500 123 12 0 chr1 111584128 111584209 -131080144 - MER53 DNA DNA -95 94 13 298 235 196 10 chr1 111584267 111584369 -131079984 + MIR SINE MIR 132 252 -10 1099 221 14 0 chr1 111584399 111584612 -131079741 - MER58A DNA MER1_type 0 224 9 2154 117 0 23 chr1 111584796 111585104 -131079249 - AluSc SINE Alu -8 301 1 213 167 0 24 chr1 111585162 111585204 -131079149 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 3365 250 126 20 chr1 111587462 111588920 -131075433 + MER52A LTR ERV1 1 1755 0 298 255 29 20 chr1 111588928 111589030 -131075323 + LTR67 LTR ERVL 434 536 -21 396 88 0 0 chr1 111589106 111589163 -131075190 + (TG)n Simple_repeat Simple_repeat 2 58 0 1026 164 15 51 chr1 111589163 111589358 -131074995 - THE1B LTR MaLR -3 361 174 2128 39 0 0 chr1 111589358 111589616 -131074737 - L1PA4 LINE L1 -4 6151 5894 4748 22 0 0 chr1 111589616 111590163 -131074190 + L1PA4 LINE L1 5338 5884 -271 1181 104 92 0 chr1 111590163 111590336 -131074017 - THE1B LTR MaLR -175 189 1 190 222 67 0 chr1 111591012 111591057 -131073296 + MIR SINE MIR 66 113 -95 313 93 0 19 chr1 111591644 111591831 -131072522 + Alu SINE Alu 248 433 0 609 279 171 58 chr1 111591933 111592348 -131072005 - MLT1J LTR MaLR -43 468 7 630 107 25 41 chr1 111592386 111592507 -131071846 - L1MA3 LINE L1 -204 6101 5983 832 201 0 0 chr1 111592510 111592684 -131071669 + L1MA3 LINE L1 6122 6295 -10 228 209 0 0 chr1 111593975 111594018 -131070335 - L2 LINE L2 0 3272 3230 395 344 74 33 chr1 111594257 111594510 -131069843 - L2 LINE L2 -286 2986 2733 1560 143 0 4 chr1 111594660 111594930 -131069423 - AluSx SINE Alu 0 322 54 239 191 29 59 chr1 111596519 111596587 -131067766 - MLT1J2 LTR MaLR -313 137 72 1213 183 24 0 chr1 111597363 111597576 -131066777 - AluJo SINE Alu -92 220 3 26 64 0 0 chr1 111597710 111597757 -131066596 + AT_rich Low_complexity Low_complexity 1 47 0 2177 281 81 44 chr1 111599830 111600804 -131063549 - L2 LINE L2 -5 3308 2283 2389 99 0 0 chr1 111600804 111601107 -131063246 + AluSc SINE Alu 1 303 -6 2177 281 81 44 chr1 111601107 111601306 -131063047 - L2 LINE L2 -1030 2283 2093 834 300 28 4 chr1 111601998 111602248 -131062105 - MIR SINE MIR -1 261 6 204 182 0 0 chr1 111605158 111605202 -131059151 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 422 304 134 27 chr1 111605255 111605479 -131058874 - MIR SINE MIR -12 250 3 2225 104 0 3 chr1 111606714 111607013 -131057340 - AluSq SINE Alu -15 298 1 287 282 89 24 chr1 111607720 111607844 -131056509 - MIR SINE MIR -48 214 83 282 250 182 0 chr1 111608325 111608457 -131055896 + MER103 DNA DNA 11 166 0 554 279 95 56 chr1 111608830 111609135 -131055218 + MLT1K LTR MaLR 32 348 -240 313 238 12 24 chr1 111609293 111609377 -131054976 + MLT1K LTR MaLR 464 546 -42 357 301 22 52 chr1 111609536 111609672 -131054681 - MIR3 SINE MIR -30 178 47 233 262 123 66 chr1 111609757 111609879 -131054474 + MIR SINE MIR 16 144 -64 27 49 0 0 chr1 111610306 111610347 -131054006 + AT_rich Low_complexity Low_complexity 1 41 0 974 151 22 11 chr1 111610485 111610664 -131053689 + THE1C LTR MaLR 195 375 0 932 128 235 5 chr1 111611479 111611683 -131052670 + L1PA16 LINE L1 5910 6160 -6 776 200 0 38 chr1 111611850 111612010 -131052343 + FRAM SINE Alu 1 152 -24 21 71 0 0 chr1 111613277 111613319 -131051034 + AT_rich Low_complexity Low_complexity 1 42 0 533 282 96 14 chr1 111613720 111613940 -131050413 + MIR SINE MIR 1 238 -24 257 307 114 14 chr1 111614163 111614303 -131050050 - L2 LINE L2 -43 3229 3076 995 262 63 5 chr1 111614799 111615160 -131049193 - MLT1C LTR MaLR -2 465 6 21 0 0 0 chr1 111618481 111618502 -131045851 + AT_rich Low_complexity Low_complexity 1 21 0 383 341 83 62 chr1 111618946 111619271 -131045082 - L2 LINE L2 -93 3220 2889 231 306 59 0 chr1 111619643 111619728 -131044625 + MER91C DNA MER1_type 19 108 -32 313 260 57 16 chr1 111621055 111621178 -131043175 - MIR SINE MIR -120 142 15 1528 190 0 4 chr1 111621618 111621876 -131042477 - AluJo SINE Alu -55 257 1 24 91 0 0 chr1 111622537 111622603 -131041750 + AT_rich Low_complexity Low_complexity 1 66 0 257 259 12 12 chr1 111623043 111623128 -131041225 + CT-rich Low_complexity Low_complexity 2 86 0 1753 238 204 4 chr1 111623619 111624120 -131040233 - MLT2F LTR ERVL -62 601 1 800 307 110 39 chr1 111624130 111624910 -131039443 + L2 LINE L2 2455 3311 -2 906 207 53 0 chr1 111625334 111625522 -131038831 - L1MC1 LINE L1 -9 6324 6127 5176 142 27 17 chr1 111625525 111626457 -131037896 - L1MC1 LINE L1 -139 6194 5254 876 182 79 79 chr1 111626486 111626700 -131037653 + Tigger3(Golem) DNA MER2_type 1 214 -2815 1470 160 39 0 chr1 111626722 111626978 -131037375 + Tigger3(Golem) DNA MER2_type 2773 3038 0 2755 258 16 49 chr1 111626978 111628324 -131036029 - L1MC1 LINE L1 -920 5226 3988 3081 59 76 0 chr1 111628324 111628362 -131035991 - MLT2A1 LTR ERVL 0 444 410 249 33 0 0 chr1 111628362 111628392 -131035961 + (TA)n Simple_repeat Simple_repeat 2 31 0 3081 59 76 0 chr1 111628392 111628762 -131035591 - MLT2A1 LTR ERVL -34 410 5 2755 258 16 49 chr1 111628762 111628897 -131035456 - L1MC1 LINE L1 -2158 3988 3850 195 316 39 84 chr1 111628920 111629075 -131035278 - MIR SINE MIR -54 208 61 393 244 61 15 chr1 111629203 111629334 -131035019 - MER117 DNA MER1_type -16 181 45 260 311 42 79 chr1 111629903 111630093 -131034260 - MIR3 SINE MIR -10 198 16 276 364 134 11 chr1 111630126 111630395 -131033958 - L2 LINE L2 -463 2851 2550 2857 10 0 0 chr1 111630403 111630712 -131033641 + AluYb8 SINE Alu 1 309 -9 312 247 0 0 chr1 111630792 111630877 -131033476 + (TA)n Simple_repeat Simple_repeat 2 86 0 1779 168 37 0 chr1 111631982 111632280 -131032073 + AluSx SINE Alu 1 309 -3 197 65 32 0 chr1 111633467 111633498 -131030855 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 256 317 108 54 chr1 111635516 111635683 -131028670 + MIR3 SINE MIR 29 204 -4 22 0 0 0 chr1 111636137 111636159 -131028194 + AT_rich Low_complexity Low_complexity 1 22 0 271 260 14 0 chr1 111636536 111636609 -131027744 - MIR SINE MIR -123 139 66 5547 92 17 11 chr1 111636746 111637578 -131026775 - L1MA2 LINE L1 0 6304 5468 1685 131 104 0 chr1 111638300 111638559 -131025794 + AluSc SINE Alu 2 287 -22 1985 131 52 30 chr1 111638842 111639209 -131025144 + THE1C LTR MaLR 1 375 0 227 27 0 54 chr1 111639280 111639317 -131025036 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 270 163 0 0 chr1 111639369 111639412 -131024941 - Zaphod DNA AcHobo -2 4029 3987 533 325 109 50 chr1 111639434 111639736 -131024617 - MER115 DNA AcHobo -259 434 115 339 81 48 32 chr1 111639967 111640029 -131024324 + L1MC5 LINE L1 7630 7692 -269 274 208 19 0 chr1 111640437 111640490 -131023863 + L2 LINE L2 3254 3307 -6 439 286 9 0 chr1 111640575 111640687 -131023666 - MER81 DNA DNA 0 114 2 263 330 52 81 chr1 111640981 111641290 -131023063 + HAL1 LINE L1 263 562 -1945 287 303 37 9 chr1 111641345 111641454 -131022899 + HAL1 LINE L1 1604 1715 -792 247 267 33 0 chr1 111641464 111641524 -131022829 + HAL1 LINE L1 1804 1865 -642 21 71 0 0 chr1 111641541 111641583 -131022770 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 111641813 111641842 -131022511 + AT_rich Low_complexity Low_complexity 1 29 0 9206 203 68 51 chr1 111642282 111643367 -131020986 + Charlie1 DNA MER1_type 1 1066 -1695 2105 136 0 0 chr1 111643367 111643677 -131020676 + AluSx SINE Alu 1 310 -2 9206 203 68 51 chr1 111643677 111645305 -131019048 + Charlie1 DNA MER1_type 1066 2761 0 4402 32 0 0 chr1 111645642 111646170 -131018183 - L1P LINE L1 -2264 3882 3355 6924 29 1 4 chr1 111646170 111647002 -131017351 + L1PA4 LINE L1 5323 6153 -2 212 143 0 0 chr1 111648887 111648922 -131015431 + (TG)n Simple_repeat Simple_repeat 2 36 0 366 357 98 30 chr1 111650660 111651027 -131013326 - L3 LINE CR1 -989 588 197 333 0 0 0 chr1 111651409 111651446 -131012907 + (TA)n Simple_repeat Simple_repeat 1 37 0 180 77 0 0 chr1 111651496 111651522 -131012831 + (CA)n Simple_repeat Simple_repeat 2 27 0 1455 165 92 0 chr1 111651642 111651914 -131012439 - AluJo SINE Alu -15 297 1 1606 123 12 0 chr1 111651951 111652195 -131012158 + L1PB3 LINE L1 5908 6154 0 408 283 8 25 chr1 111652598 111652718 -131011635 - L2 LINE L2 -5 3308 3191 2760 10 3 0 chr1 111653054 111653364 -131010989 + AluY SINE Alu 1 311 0 26 50 0 0 chr1 111653421 111653461 -131010892 + AT_rich Low_complexity Low_complexity 1 40 0 1424 120 68 4 chr1 111653635 111653901 -131010452 - L1MA8 LINE L1 0 6291 6009 195 200 29 14 chr1 111654191 111654261 -131010092 + CT-rich Low_complexity Low_complexity 1 71 0 310 317 75 39 chr1 111654521 111654701 -131009652 + MIR3 SINE MIR 1 189 -56 28 0 0 0 chr1 111655289 111655317 -131009036 + AT_rich Low_complexity Low_complexity 1 28 0 7693 106 19 28 chr1 111655816 111657068 -131007285 - HSMAR2 DNA Mariner -1 1301 3 1155 144 23 0 chr1 111657096 111657366 -131006987 - L1P LINE L1 -738 5428 5154 4320 137 14 18 chr1 111657367 111658092 -131006261 + L1PA16 LINE L1 5445 6166 0 353 293 30 30 chr1 111658370 111658568 -131005785 + L1M4 LINE L1 4490 4687 -1459 284 265 34 68 chr1 111659704 111659821 -131004532 - L1ME LINE L1 -531 6033 5921 461 314 66 3 chr1 111660094 111660381 -131003972 - L1ME LINE L1 -3572 2968 2664 366 310 95 40 chr1 111660875 111661117 -131003236 - L1ME LINE L1 -4440 2100 1840 540 91 13 0 chr1 111661117 111661194 -131003159 + MADE1 DNA Mariner 1 78 -2 366 310 95 40 chr1 111661194 111661225 -131003128 - L1ME LINE L1 -4700 1840 1812 9056 74 18 4 chr1 111661239 111662532 -131001821 - L1PA6 LINE L1 -722 5432 4130 5752 61 0 0 chr1 111662532 111663253 -131001100 + L1PA6 LINE L1 5428 6151 -3 561 290 48 100 chr1 111663478 111664161 -131000192 - L1ME LINE L1 -5055 1475 828 2229 75 0 0 chr1 111664705 111665030 -130999323 + AluY SINE Alu 3 327 0 428 262 154 33 chr1 111665032 111665364 -130998989 + L1ME4a LINE L1 5629 6000 -121 2000 183 66 5 chr1 111665508 111665886 -130998467 - MSTA LTR MaLR -27 401 1 1040 190 0 0 chr1 111666310 111666489 -130997864 - AluSg/x SINE Alu -18 294 116 * 1405 146 0 0 chr1 111666488 111666693 -130997660 - AluSx SINE Alu -107 205 1 547 262 87 26 chr1 111668040 111668236 -130996117 - MIR SINE MIR -2 260 54 269 223 91 58 chr1 111668305 111668426 -130995927 - L2 LINE L2 -72 3241 3117 625 238 28 56 chr1 111669004 111669218 -130995135 - L2 LINE L2 0 3313 3106 316 330 35 9 chr1 111669410 111669525 -130994828 - Charlie7 DNA MER1_type -2313 299 182 4749 83 22 1 chr1 111670084 111670731 -130993622 - PABL_A LTR ERV1 0 660 1 225 309 11 85 chr1 111672744 111672838 -130991515 - LTR67 LTR ERVL -376 181 95 2300 153 50 29 chr1 111673350 111673767 -130990586 - MSTB LTR MaLR 0 426 1 887 306 25 0 chr1 111673925 111674167 -130990186 + MIR SINE MIR 1 248 -14 6208 102 31 8 chr1 111674189 111675330 -130989023 - L1PA11 LINE L1 -1 6173 5005 2133 123 24 39 chr1 111675330 111675711 -130988642 - THE1C LTR MaLR 0 375 1 6208 102 31 8 chr1 111675711 111676090 -130988263 - L1PA11 LINE L1 -1169 5005 4636 3371 147 11 2 chr1 111676092 111676644 -130987709 + L1PA11 LINE L1 4080 4636 -1510 390 288 72 7 chr1 111676813 111676952 -130987401 - MIR SINE MIR -5 257 110 202 264 0 19 chr1 111677085 111677138 -130987215 - MIR SINE MIR -47 215 164 407 339 20 49 chr1 111677161 111677406 -130986947 - MLT1L LTR MaLR -23 592 355 22 88 0 0 chr1 111677946 111678003 -130986350 + AT_rich Low_complexity Low_complexity 1 57 0 27 0 0 0 chr1 111678059 111678086 -130986267 + AT_rich Low_complexity Low_complexity 1 27 0 354 23 0 0 chr1 111678501 111678544 -130985809 + (CA)n Simple_repeat Simple_repeat 2 44 0 479 287 116 14 chr1 111678664 111679009 -130985344 - L1ME4a LINE L1 -206 5915 5536 180 192 96 39 chr1 111681117 111681169 -130983184 + L2 LINE L2 2678 2732 -582 269 263 77 19 chr1 111681681 111681837 -130982516 + L1ME LINE L1 5643 5807 -314 27 29 0 0 chr1 111683289 111683323 -130981030 + AT_rich Low_complexity Low_complexity 1 34 0 427 256 246 38 chr1 111683470 111683503 -130980850 + MIR SINE MIR 2 27 -235 2461 53 23 0 chr1 111683503 111683805 -130980548 + AluSp SINE Alu 1 309 -4 427 256 246 38 chr1 111683805 111683982 -130980371 + MIR SINE MIR 27 256 -6 27 0 0 0 chr1 111685127 111685154 -130979199 + AT_rich Low_complexity Low_complexity 1 27 0 267 343 56 38 chr1 111685155 111685411 -130978942 + L2 LINE L2 2778 3038 -234 346 295 127 72 chr1 111685460 111685806 -130978547 - L2 LINE L2 -18 3295 2931 281 326 30 53 chr1 111685911 111686043 -130978310 + L2 LINE L2 3139 3267 -5 215 181 83 69 chr1 111686293 111686365 -130977988 + L2 LINE L2 3239 3311 -2 261 235 103 0 chr1 111686417 111686485 -130977868 - L2 LINE L2 -1 3312 3238 2137 108 7 3 chr1 111686642 111686938 -130977415 - AluSp SINE Alu -16 297 1 187 336 144 58 chr1 111688553 111688657 -130975696 - L2 LINE L2 0 3272 3160 24 32 0 0 chr1 111688886 111688917 -130975436 + AT_rich Low_complexity Low_complexity 1 31 0 391 333 47 57 chr1 111689562 111689947 -130974406 - L1MEc LINE L1 -5208 1188 808 1908 260 88 33 chr1 111689949 111690997 -130973356 + L1 LINE L1 1506 2583 -3632 1833 161 44 19 chr1 111690997 111691363 -130972990 + THE1C LTR MaLR 1 375 0 1908 260 88 33 chr1 111691363 111691581 -130972772 + L1 LINE L1 2583 2788 -3427 252 284 110 38 chr1 111691593 111691984 -130972369 + L1 LINE L1 4349 4767 -1448 2492 222 69 0 chr1 111692044 111692652 -130971701 - L1P LINE L1 -873 5273 4624 333 138 0 0 chr1 111692652 111692710 -130971643 + L1PA14 LINE L1 6099 6156 -5 382 276 67 25 chr1 111692721 111693025 -130971328 + L1 LINE L1 4807 5136 -1079 24 0 0 0 chr1 111693170 111693194 -130971159 + AT_rich Low_complexity Low_complexity 1 24 0 198 346 158 20 chr1 111693704 111693805 -130970548 + MIR SINE MIR 16 130 -78 307 60 0 0 chr1 111693810 111693865 -130970488 - L1HS LINE L1 0 6155 6100 26 74 0 0 chr1 111693908 111693962 -130970391 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr1 111695237 111695259 -130969094 + AT_rich Low_complexity Low_complexity 1 22 0 892 182 35 0 chr1 111695259 111695457 -130968896 - L1MA6 LINE L1 0 6300 6096 1837 148 118 15 chr1 111695457 111695787 -130968566 - THE1B LTR MaLR 0 364 1 11058 117 4 9 chr1 111695787 111696950 -130967403 - THE1B-int LTR MaLR 0 1580 426 7421 27 10 1 chr1 111696950 111697981 -130966372 + L1PA4 LINE L1 5116 6154 -1 11058 117 4 9 chr1 111697981 111698405 -130965948 - THE1B-int LTR MaLR -1154 426 1 1962 152 76 15 chr1 111698405 111698748 -130965605 - THE1B LTR MaLR 0 364 1 4356 147 8 50 chr1 111698749 111699606 -130964747 - L1MA6 LINE L1 -201 6099 5282 3772 189 19 4 chr1 111699601 111700357 -130963996 + L1 LINE L1 4472 5238 -908 * 277 263 13 0 chr1 111700415 111700491 -130963862 + L1ME LINE L1 1316 1392 -5034 2021 264 56 26 chr1 111700508 111700967 -130963386 + L1ME LINE L1 1749 2193 -4233 1549 178 10 14 chr1 111700967 111701259 -130963094 - AluJo SINE Alu -21 291 1 2021 264 56 26 chr1 111701259 111701825 -130962528 + L1ME LINE L1 2193 2776 -3650 23 54 0 0 chr1 111701828 111701865 -130962488 + AT_rich Low_complexity Low_complexity 1 37 0 2601 226 95 36 chr1 111701912 111703125 -130961228 + L1ME LINE L1 4700 5980 -466 381 85 0 0 chr1 111704033 111704080 -130960273 - MER3 DNA MER1_type 0 209 163 1147 191 0 60 chr1 111704101 111704368 -130959985 - AluJo SINE Alu -61 251 1 460 284 18 12 chr1 111704369 111704538 -130959815 - MER3 DNA MER1_type -85 124 2 222 37 0 0 chr1 111705621 111705648 -130958705 + (TA)n Simple_repeat Simple_repeat 1 27 0 217 225 0 0 chr1 111705648 111705688 -130958665 + (CA)n Simple_repeat Simple_repeat 1 40 0 386 148 57 11 chr1 111705827 111705915 -130958438 - L1MB3 LINE L1 -3 6180 6089 476 263 56 56 chr1 111706049 111706369 -130957984 + L1ME3A LINE L1 5623 5942 -228 237 163 0 0 chr1 111706547 111706596 -130957757 + T-rich Low_complexity Low_complexity 1 49 0 207 178 0 68 chr1 111706970 111707043 -130957310 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 2196 121 0 0 chr1 111707075 111707382 -130956971 + AluSg SINE Alu 1 307 -3 22 0 0 0 chr1 111707430 111707452 -130956901 + AT_rich Low_complexity Low_complexity 1 22 0 302 328 0 41 chr1 111707884 111708006 -130956347 + HAL1 LINE L1 702 818 -1689 * 1138 242 42 31 chr1 111708004 111708360 -130955993 - L1ME3A LINE L1 0 6239 5880 24 67 0 0 chr1 111708589 111708634 -130955719 + AT_rich Low_complexity Low_complexity 1 45 0 23086 182 27 18 chr1 111708680 111709363 -130954990 - L1PA11 LINE L1 -5 7607 6932 2007 135 0 7 chr1 111709363 111709660 -130954693 - AluSx SINE Alu -13 299 5 23086 182 27 18 chr1 111709660 111715435 -130948918 - L1PA11 LINE L1 -680 6932 10 292 287 59 0 chr1 111715494 111715595 -130948758 - L1ME3A LINE L1 -542 5697 5591 458 250 108 25 chr1 111715663 111715903 -130948450 - L1ME3A LINE L1 -799 5416 5157 332 241 62 0 chr1 111715965 111716077 -130948276 - Charlie4 DNA MER1_type -16 1945 1827 2651 292 72 23 chr1 111716120 111716978 -130947375 - L1ME3A LINE L1 -1114 5101 4133 3763 178 13 25 chr1 111716978 111717692 -130946661 - MER44D DNA MER2_type 0 705 1 2651 292 72 23 chr1 111717692 111718369 -130945984 - L1ME3A LINE L1 -2082 4133 3491 288 269 0 0 chr1 111718371 111718475 -130945878 + (TA)n Simple_repeat Simple_repeat 2 105 0 2595 239 34 30 chr1 111718524 111719381 -130944972 - L1ME3A LINE L1 -3044 3171 2312 330 270 71 36 chr1 111719392 111719588 -130944765 - L1ME3A LINE L1 -4711 1504 1302 1480 218 120 46 chr1 111719597 111720055 -130944298 + MLT1D LTR MaLR 5 496 -9 1509 271 45 3 chr1 111720061 111720644 -130943709 - L1ME3A LINE L1 -5047 1349 743 914 326 79 12 chr1 111720677 111721171 -130943182 - L1ME3A LINE L1 -5835 561 35 583 246 166 20 chr1 111721235 111721795 -130942558 - L1M4 LINE L1 -2834 3312 2671 250 148 0 33 chr1 111721799 111721860 -130942493 + (TA)n Simple_repeat Simple_repeat 2 60 0 27 0 0 0 chr1 111722053 111722080 -130942273 + AT_rich Low_complexity Low_complexity 1 27 0 264 264 109 92 chr1 111722228 111722915 -130941438 + HAL1 LINE L1 812 1510 -997 * 499 270 123 66 chr1 111722901 111723476 -130940877 + HAL1 LINE L1 1764 2371 -136 26 50 0 0 chr1 111723485 111723525 -130940828 + AT_rich Low_complexity Low_complexity 1 40 0 294 304 39 138 chr1 111723764 111723831 -130940522 + L2 LINE L2 2827 2899 -373 1731 157 11 11 chr1 111723831 111724147 -130940206 - AluSx SINE Alu 0 316 1 294 304 39 138 chr1 111724147 111724572 -130939781 + L2 LINE L2 2899 3271 -1 324 228 89 57 chr1 111724647 111724770 -130939583 + MIR SINE MIR 80 206 -56 213 211 0 0 chr1 111725623 111725680 -130938673 + CT-rich Low_complexity Low_complexity 2 58 0 486 237 171 13 chr1 111726121 111726273 -130938080 - MER5A DNA MER1_type -1 188 13 510 312 87 32 chr1 111726533 111726751 -130937602 + MIR SINE MIR 25 254 -8 259 103 0 0 chr1 111728083 111728122 -130936231 - MER5A DNA MER1_type -114 75 37 583 84 21 0 chr1 111728123 111728218 -130936135 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 297 51 0 0 chr1 111728478 111728517 -130935836 + (GA)n Simple_repeat Simple_repeat 2 40 0 315 71 0 0 chr1 111729172 111729214 -130935139 + (CA)n Simple_repeat Simple_repeat 1 42 0 321 305 34 124 chr1 111731092 111731446 -130932907 - L2 LINE L2 -27 3245 2924 231 266 47 0 chr1 111731843 111731907 -130932446 - L2 LINE L2 -52 3220 3154 232 163 47 0 chr1 111732128 111732171 -130932182 - L2 LINE L2 -8 3305 3261 626 313 34 24 chr1 111732182 111732476 -130931877 + L2 LINE L2 2860 3156 -157 1809 148 17 3 chr1 111732665 111732963 -130931390 + AluSx SINE Alu 1 302 -10 16442 31 2 1 chr1 111732974 111735984 -130928369 + L1PA3 LINE L1 3134 6155 0 341 222 119 8 chr1 111736105 111736231 -130928122 - L1ME4a LINE L1 -1 6120 5981 235 331 8 30 chr1 111736634 111736767 -130927586 + LTR16C LTR ERVL 352 481 -10 184 387 11 11 chr1 111736831 111736924 -130927429 + L2 LINE L2 3184 3276 -37 249 108 0 0 chr1 111737929 111737966 -130926387 + (A)n Simple_repeat Simple_repeat 1 37 0 4349 113 19 28 chr1 111739195 111739922 -130924431 - L1MA2 LINE L1 0 6304 5584 1580 186 119 65 chr1 111741197 111741675 -130922678 + MLT1D LTR MaLR 2 505 0 1423 123 50 0 chr1 111741777 111741996 -130922357 + MER30 DNA MER1_type 1 230 0 280 125 21 0 chr1 111741996 111742044 -130922309 + MER67D LTR ERV1 12 60 -454 800 144 11 22 chr1 111742058 111742238 -130922115 + CT-rich Low_complexity Low_complexity 3 180 0 483 153 36 9 chr1 111742260 111742371 -130921982 + CT-rich Low_complexity Low_complexity 3 116 0 1800 185 19 64 chr1 111742387 111742808 -130921545 + MER67D LTR ERV1 47 448 -66 21 0 0 0 chr1 111742817 111742838 -130921515 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr1 111743235 111743277 -130921076 + AT_rich Low_complexity Low_complexity 1 42 0 302 214 12 0 chr1 111745104 111745188 -130919165 + CT-rich Low_complexity Low_complexity 4 88 0 938 153 23 210 chr1 111745188 111745535 -130918818 - MLT1A2 LTR MaLR -90 284 3 604 259 50 40 chr1 111747880 111748081 -130916272 + MIR SINE MIR 60 262 0 222 265 0 12 chr1 111748370 111748453 -130915900 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 1150 266 111 16 chr1 111748708 111749088 -130915265 - L2 LINE L2 0 3313 2898 679 269 50 42 chr1 111749099 111749337 -130915016 - MIR SINE MIR -21 241 2 299 212 94 0 chr1 111750579 111750664 -130913689 - L2 LINE L2 -2025 1289 1197 180 250 0 0 chr1 111750825 111750873 -130913480 + (TA)n Simple_repeat Simple_repeat 1 48 0 1239 145 80 33 chr1 111750877 111751170 -130913183 + MER7A DNA MER2_type 1 337 0 21 0 0 0 chr1 111752664 111752685 -130911668 + AT_rich Low_complexity Low_complexity 1 21 0 2732 255 49 81 chr1 111753254 111754429 -130909924 + L2 LINE L2 1342 2479 -835 1056 278 128 24 chr1 111755421 111755669 -130908684 + L2 LINE L2 2534 2755 -558 2143 97 0 0 chr1 111755669 111755948 -130908405 + AluSc SINE Alu 3 281 -28 1056 278 128 24 chr1 111755948 111756268 -130908085 + L2 LINE L2 2755 3156 -157 264 307 50 50 chr1 111756357 111756497 -130907856 + L2 LINE L2 3174 3313 0 743 291 16 16 chr1 111758849 111759091 -130905262 - MIR SINE MIR -5 257 19 429 398 67 12 chr1 111761113 111761455 -130902898 - L2 LINE L2 -3 3269 2909 384 47 31 16 chr1 111761613 111761677 -130902676 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 443 298 73 48 chr1 111761925 111762442 -130901911 - L1MC5 LINE L1 -140 7821 7292 516 213 251 11 chr1 111764775 111765038 -130899315 + L1MEc LINE L1 2035 2360 -4036 3000 188 50 26 chr1 111765567 111765666 -130898687 - L1MC3 LINE L1 0 7785 7690 2659 143 9 9 chr1 111765666 111766128 -130898225 - L1PB3 LINE L1 -7 6147 5686 3000 188 50 26 chr1 111766128 111766682 -130897671 - L1MC3 LINE L1 -95 7690 7116 344 93 0 20 chr1 111766683 111766741 -130897612 - MLT2C1 LTR ERVL 0 397 350 254 231 13 13 chr1 111766743 111766821 -130897532 + (TA)n Simple_repeat Simple_repeat 1 78 0 1141 224 9 5 chr1 111766870 111767093 -130897260 - MER8 DNA MER2_type 0 239 16 1740 189 33 9 chr1 111767168 111767502 -130896851 - MLT2C1 LTR ERVL -55 342 1 7609 182 43 58 chr1 111767502 111769381 -130894972 - L1MC3 LINE L1 -666 7119 5270 779 261 31 10 chr1 111770064 111770259 -130894094 + MIR SINE MIR 1 199 -63 1354 176 55 17 chr1 111775158 111775447 -130888906 + L1PA16 LINE L1 5867 6166 0 272 325 96 16 chr1 111775913 111775969 -130888384 + Charlie7 DNA MER1_type 7 57 -2555 1354 190 27 4 chr1 111775969 111776232 -130888121 + L1PB4 LINE L1 5888 6156 0 272 325 96 16 chr1 111776232 111776363 -130887990 + Charlie7 DNA MER1_type 57 209 -2403 260 323 0 0 chr1 111776443 111776542 -130887811 + Charlie7 DNA MER1_type 1488 1586 -1026 284 260 21 21 chr1 111776557 111776653 -130887700 + (TTTA)n Simple_repeat Simple_repeat 4 99 0 186 189 0 0 chr1 111777656 111777693 -130886660 + GA-rich Low_complexity Low_complexity 4 40 0 410 212 76 34 chr1 111777866 111777984 -130886369 - MER58B DNA MER1_type 0 341 219 608 245 117 11 chr1 111778044 111778232 -130886121 - MER58B DNA MER1_type -125 216 9 1909 148 37 6 chr1 111779473 111779824 -130884529 + Tigger2 DNA MER2_type 4 365 -2353 1576 152 55 34 chr1 111779952 111780280 -130884073 - MER44D DNA MER2_type -2 607 3 21 0 0 0 chr1 111780786 111780807 -130883546 + AT_rich Low_complexity Low_complexity 1 21 0 192 288 15 15 chr1 111780976 111781042 -130883311 + MIR SINE MIR 181 246 -16 384 264 20 34 chr1 111781494 111781642 -130882711 + LTR16A1 LTR ERVL 310 455 -2 327 25 0 0 chr1 111782615 111782655 -130881698 + (CA)n Simple_repeat Simple_repeat 1 40 0 307 214 12 12 chr1 111782658 111782742 -130881611 + MER112 DNA MER1_type 82 165 -95 180 26 26 51 chr1 111784280 111784319 -130880034 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 266 298 78 114 chr1 111784986 111785231 -130879122 - L2 LINE L2 -11 3261 3026 366 261 85 18 chr1 111785652 111785856 -130878497 - MIR SINE MIR -3 259 6 24 32 0 0 chr1 111786926 111786957 -130877396 + AT_rich Low_complexity Low_complexity 1 31 0 1005 290 62 20 chr1 111788286 111788676 -130875677 - L2 LINE L2 -610 2704 2299 2111 316 94 37 chr1 111788789 111788885 -130875468 - L2 LINE L2 -1501 1813 1724 2202 113 7 0 chr1 111788885 111789185 -130875168 - AluSx SINE Alu -10 302 1 2111 316 94 37 chr1 111789185 111790229 -130874124 - L2 LINE L2 -1590 1724 608 721 302 53 4 chr1 111790220 111790465 -130873888 - MIR SINE MIR 0 262 6 * 762 311 137 30 chr1 111791412 111792024 -130872329 + L2 LINE L2 2631 3295 -18 823 277 72 61 chr1 111792240 111792789 -130871564 - MLT2E LTR ERVL 0 628 15 25 65 0 0 chr1 111793332 111793378 -130870975 + AT_rich Low_complexity Low_complexity 1 46 0 208 203 8 78 chr1 111794044 111794172 -130870181 + A-rich Low_complexity Low_complexity 4 122 0 1024 291 82 67 chr1 111794217 111794801 -130869552 - MLT1E LTR MaLR 0 593 1 362 280 33 70 chr1 111794811 111795025 -130869328 + L1MEd LINE L1 896 1101 -5018 23 33 0 0 chr1 111795451 111795481 -130868872 + AT_rich Low_complexity Low_complexity 1 30 0 3533 31 5 0 chr1 111796054 111796478 -130867875 - L1PA4 LINE L1 -1 6154 5729 991 26 0 0 chr1 111796478 111796594 -130867759 + L1PA4 LINE L1 5609 5724 -430 765 206 26 32 chr1 111796736 111796925 -130867428 + L1MC4 LINE L1 7378 7565 -477 479 66 0 0 chr1 111796936 111796997 -130867356 + Alu SINE Alu 237 297 -15 363 272 0 0 chr1 111797000 111797081 -130867272 + L1MC4 LINE L1 5202 5282 -864 456 220 81 85 chr1 111797316 111798214 -130866139 + L1MC4 LINE L1 5278 6103 -63 303 252 142 39 chr1 111798232 111798541 -130865812 + L1M4 LINE L1 4993 5333 -813 22 0 0 0 chr1 111799105 111799127 -130865226 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 111799202 111799226 -130865127 + AT_rich Low_complexity Low_complexity 1 24 0 314 361 15 8 chr1 111799549 111799679 -130864674 + MER5A DNA MER1_type 41 171 -18 220 278 97 0 chr1 111800059 111800131 -130864222 - MIR SINE MIR -61 201 123 5139 53 2 0 chr1 111800833 111801472 -130862881 - L1PA5 LINE L1 -1 6153 5514 1115 160 0 5 chr1 111801572 111801760 -130862593 + Tigger2 DNA MER2_type 386 572 -2146 330 194 16 0 chr1 111801782 111801844 -130862509 + Tigger2 DNA MER2_type 689 751 -1967 1556 127 24 8 chr1 111801905 111802158 -130862195 + Tigger2 DNA MER2_type 2452 2708 -10 419 91 0 15 chr1 111802405 111802471 -130861882 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 259 386 87 8 chr1 111803434 111803561 -130860792 - L2 LINE L2 -10 3262 3126 189 234 21 0 chr1 111803652 111803699 -130860654 - MIR3 SINE MIR -11 197 150 * 213 330 154 0 chr1 111803668 111803759 -130860594 - L3 LINE CR1 -24 1553 1449 218 304 59 10 chr1 111804008 111804110 -130860243 + MIR3 SINE MIR 93 199 -9 366 302 54 63 chr1 111804206 111804411 -130859942 + MIR SINE MIR 31 233 -29 458 181 9 48 chr1 111804519 111804624 -130859729 - L2 LINE L2 -4 3268 3168 380 347 126 9 chr1 111805676 111806010 -130858343 - L3 LINE CR1 -953 624 252 246 32 0 0 chr1 111806998 111807029 -130857324 + (TG)n Simple_repeat Simple_repeat 2 32 0 185 365 0 19 chr1 111810122 111810174 -130854179 + L2 LINE L2 3123 3173 -99 801 254 101 4 chr1 111810256 111810484 -130853869 - MIR SINE MIR -1 261 12 256 304 22 22 chr1 111810618 111810710 -130853643 + MIR SINE MIR 3 94 -168 199 224 119 15 chr1 111810685 111810752 -130853601 - MIR SINE MIR -80 182 109 * 1848 150 7 7 chr1 111810754 111811047 -130853306 + AluSq SINE Alu 1 293 -20 189 161 65 0 chr1 111811066 111811128 -130853225 + GA-rich Low_complexity Low_complexity 4 69 0 1883 148 68 21 chr1 111811230 111811569 -130852784 - MSTA LTR MaLR -73 355 1 1385 258 99 83 chr1 111811778 111813011 -130851342 - L1MEc LINE L1 -4482 1914 662 5247 100 49 19 chr1 111813270 111814092 -130850261 - L1PA13 LINE L1 -1 6162 5317 7430 37 0 0 chr1 111814115 111815261 -130849092 - L1PA4 LINE L1 -3 6152 5007 3740 27 0 0 chr1 111815261 111815702 -130848651 + L1PA4 LINE L1 4570 5010 -1136 1693 158 16 0 chr1 111815704 111816014 -130848339 - L1PA13 LINE L1 -818 5328 5014 * 10029 163 11 9 chr1 111816012 111817808 -130846545 + L1PA13 LINE L1 3246 5044 -1102 371 299 92 35 chr1 111819341 111819515 -130844838 + MIR SINE MIR 54 237 -25 6608 37 490 1 chr1 111821385 111822692 -130841661 + L1P2 LINE L1 3559 5511 -644 331 341 32 0 chr1 111822800 111822926 -130841427 - L3 LINE CR1 -136 1441 1312 220 274 97 53 chr1 111823016 111823129 -130841224 - L3 LINE CR1 -274 1303 1186 32 26 0 0 chr1 111823324 111823363 -130840990 + AT_rich Low_complexity Low_complexity 1 39 0 2112 137 73 15 chr1 111823631 111823973 -130840380 - THE1B LTR MaLR -2 362 1 285 170 0 0 chr1 111825171 111825224 -130839129 - L2 LINE L2 0 3313 3261 233 347 10 31 chr1 111825281 111825379 -130838974 + L2 LINE L2 3004 3099 -173 203 152 0 0 chr1 111826704 111826737 -130837616 + (CA)n Simple_repeat Simple_repeat 2 34 0 212 356 11 0 chr1 111826952 111827039 -130837314 - MIR3 SINE MIR -13 195 108 36 40 0 0 chr1 111827656 111827706 -130836647 + AT_rich Low_complexity Low_complexity 1 50 0 2109 104 0 0 chr1 111829474 111829752 -130834601 - AluSg SINE Alu -23 287 10 245 256 89 33 chr1 111829979 111830069 -130834284 - MIR SINE MIR -119 143 49 459 261 58 0 chr1 111832807 111832945 -130831408 - MIR SINE MIR 0 262 117 285 305 118 49 chr1 111833480 111833683 -130830670 + MIR SINE MIR 11 227 -35 956 169 60 96 chr1 111834096 111834410 -130829943 - MER33 DNA MER1_type 0 324 22 821 308 99 6 chr1 112035204 112035558 -130628795 + MLT1J2 LTR MaLR 30 416 -34 205 265 48 24 chr1 112036036 112036119 -130628234 - L2 LINE L2 0 3313 3229 403 318 38 79 chr1 112036186 112036554 -130627799 + L2 LINE L2 2008 2360 -954 404 208 14 14 chr1 112036680 112036824 -130627529 + (TA)n Simple_repeat Simple_repeat 1 144 0 2584 116 20 5 chr1 112036830 112037226 -130627127 - MLT2A1 LTR ERVL -40 404 3 2225 192 9 0 chr1 112037253 112037695 -130626658 + L1 LINE L1 4648 5093 -1053 5661 118 18 0 chr1 112037701 112038842 -130625511 - L1PA12 LINE L1 -7 6161 5008 686 200 0 7 chr1 112038949 112039099 -130625254 + MLT2B1 LTR ERVL 372 520 0 383 186 0 0 chr1 112039099 112039169 -130625184 + MLT1-int LTR MaLR 663 732 -639 436 209 0 0 chr1 112039293 112039384 -130624969 + MLT1-int LTR MaLR 677 767 -968 1732 197 7 3 chr1 112039415 112039705 -130624648 + AluJb SINE Alu 1 291 -21 1939 232 16 7 chr1 112039767 112040198 -130624155 + MLT1-int LTR MaLR 1301 1735 0 253 283 28 19 chr1 112040504 112040610 -130623743 - L3 LINE CR1 -194 1383 1277 1304 223 45 43 chr1 112040632 112041095 -130623258 + MLT2C2 LTR ERVL 1 464 0 872 326 61 58 chr1 112041100 112041689 -130622664 + L2 LINE L2 2716 3313 0 21 36 0 0 chr1 112041786 112041814 -130622539 + AT_rich Low_complexity Low_complexity 1 28 0 232 125 0 71 chr1 112043062 112043118 -130621235 - MLT2A2 LTR ERVL -2 451 400 220 194 0 0 chr1 112043119 112043155 -130621198 + (TATG)n Simple_repeat Simple_repeat 3 38 0 327 109 0 0 chr1 112043155 112043210 -130621143 + L1 LINE L1 5188 5242 -904 8979 161 7 45 chr1 112043376 112043646 -130620707 - L1P LINE L1 -1179 4967 4688 2087 53 4 0 chr1 112043646 112043910 -130620443 - L1PA4 LINE L1 -2 6153 5889 8979 161 7 45 chr1 112043910 112045557 -130618796 - L1P LINE L1 -1458 4688 3123 22 94 0 0 chr1 112045836 112045900 -130618453 + AT_rich Low_complexity Low_complexity 1 64 0 247 255 79 88 chr1 112046366 112046582 -130617771 - MLT1K LTR MaLR -180 408 195 1359 97 5 10 chr1 112046767 112046962 -130617391 + AluSg/x SINE Alu 115 308 -4 1400 234 49 75 chr1 112047083 112047271 -130617082 + LTR40a LTR ERVL 1 192 -327 2942 87 0 2 chr1 112047271 112047673 -130616680 + L1PB1 LINE L1 5748 6148 -3 1400 234 49 75 chr1 112047673 112048017 -130616336 + LTR40a LTR ERVL 192 519 0 320 317 106 0 chr1 112048020 112048143 -130616210 - MIR SINE MIR -48 214 79 797 186 0 0 chr1 112048267 112048439 -130615914 + L1 LINE L1 4497 4668 -1478 243 0 0 0 chr1 112048439 112048466 -130615887 + (A)n Simple_repeat Simple_repeat 1 27 0 1756 163 10 7 chr1 112050129 112050424 -130613929 + AluJo SINE Alu 1 296 -16 223 313 284 0 chr1 112051537 112051671 -130612682 + MER5B DNA MER1_type 4 175 -3 30 0 0 0 chr1 112052142 112052172 -130612181 + AT_rich Low_complexity Low_complexity 1 30 0 469 211 0 0 chr1 112052187 112052263 -130612090 + MER5A DNA MER1_type 1 76 -113 569 126 21 11 chr1 112052369 112052464 -130611889 - MER4A LTR ERV1 -568 96 1 2161 166 21 37 chr1 112052465 112052930 -130611423 - MER4A-int LTR ERV1 -263 3928 3471 760 178 0 16 chr1 112052952 112053081 -130611272 - FLAM_C SINE Alu -16 127 1 3516 162 6 14 chr1 112053089 112053712 -130610641 - MER4A-int LTR ERV1 -716 3475 2858 3077 161 9 26 chr1 112053720 112054258 -130610095 + MER50 LTR ERV1 12 541 -193 1982 135 28 0 chr1 112054258 112054546 -130609807 - AluSx SINE Alu -14 298 3 3077 161 9 26 chr1 112054546 112054590 -130609763 + MER50 LTR ERV1 541 584 -150 1556 91 16 40 chr1 112054592 112054845 -130609508 - L1PB1 LINE L1 -5 6146 5900 5927 183 16 5 chr1 112054946 112056131 -130608222 - L1P LINE L1 -3080 3066 1869 1584 195 28 11 chr1 112057445 112057732 -130606621 - AluJb SINE Alu -20 292 1 227 232 0 36 chr1 112058181 112058237 -130606116 - MER5B DNA MER1_type -123 55 2 1246 113 32 0 chr1 112058247 112058432 -130605921 - L1PA10 LINE L1 -5 6163 5973 183 292 111 0 chr1 112058646 112058718 -130605635 - MIR SINE MIR -94 168 89 432 0 0 0 chr1 112058885 112058933 -130605420 + (CA)n Simple_repeat Simple_repeat 1 48 0 198 364 0 0 chr1 112059770 112059825 -130604528 - L2 LINE L2 -10 3262 3208 230 284 49 0 chr1 112059843 112059924 -130604429 + L2 LINE L2 3167 3251 -62 374 351 60 54 chr1 112059944 112060485 -130603868 - L2 LINE L2 -56 3216 2687 2141 203 47 14 chr1 112060733 112061222 -130603131 + MLT1D LTR MaLR 1 505 0 288 0 0 0 chr1 112061392 112061424 -130602929 + (TG)n Simple_repeat Simple_repeat 2 33 0 467 57 43 14 chr1 112061858 112061928 -130602425 + MER4D-int LTR ERV1 6687 6758 0 4942 136 26 14 chr1 112061928 112062762 -130601591 + MER4D LTR ERV1 1 844 -28 183 80 0 0 chr1 112062800 112062825 -130601528 + (A)n Simple_repeat Simple_repeat 1 25 0 446 269 39 10 chr1 112062902 112063006 -130601347 - MIR SINE MIR -109 153 47 2068 122 0 29 chr1 112064800 112065112 -130599241 - AluSx SINE Alu -9 303 1 195 69 0 0 chr1 112066130 112066159 -130598194 + (A)n Simple_repeat Simple_repeat 1 29 0 3999 147 20 10 chr1 112066159 112067262 -130597091 + L1PB1 LINE L1 4663 5779 -372 309 109 0 0 chr1 112067262 112067308 -130597045 + (TA)n Simple_repeat Simple_repeat 2 47 0 3999 147 20 10 chr1 112067308 112067404 -130596949 + L1PB1 LINE L1 5779 5873 -278 269 75 38 19 chr1 112067402 112067455 -130596898 + L1PB1 LINE L1 6096 6149 -2 * 180 0 0 0 chr1 112068497 112068517 -130595836 + (TA)n Simple_repeat Simple_repeat 2 21 0 265 357 77 65 chr1 112069644 112069713 -130594640 + L2 LINE L2 2733 2800 -472 375 225 36 65 chr1 112069713 112069815 -130594538 - MER94 DNA DNA 0 134 35 1998 107 0 55 chr1 112069815 112070124 -130594229 + AluSx SINE Alu 1 292 -20 375 225 36 65 chr1 112070124 112070159 -130594194 - MER94 DNA DNA -99 35 1 265 357 77 65 chr1 112070159 112070619 -130593734 + L2 LINE L2 2800 3271 -1 21 36 0 0 chr1 112071859 112071887 -130592466 + AT_rich Low_complexity Low_complexity 1 28 0 510 254 84 38 chr1 112073404 112073691 -130590662 - L1ME LINE L1 -399 5722 5423 262 242 32 24 chr1 112073895 112074019 -130590334 + (CA)n Simple_repeat Simple_repeat 2 126 0 311 159 14 14 chr1 112074848 112074917 -130589436 - AluJ/FRAM SINE Alu -2 300 232 196 239 141 14 chr1 112074918 112074989 -130589364 + MIR SINE MIR 114 193 -69 685 191 41 0 chr1 112075025 112075172 -130589181 - MER6B DNA MER2_type 0 210 58 387 320 27 97 chr1 112075212 112075471 -130588882 - L2 LINE L2 -15 3257 3017 416 262 38 50 chr1 112075666 112075864 -130588489 - MIR SINE MIR -1 261 1 2274 87 13 3 chr1 112076076 112076376 -130587977 - AluSc SINE Alu -6 303 1 315 213 0 0 chr1 112076945 112077020 -130587333 + (TA)n Simple_repeat Simple_repeat 2 76 0 477 50 0 0 chr1 112077148 112077208 -130587145 + (TA)n Simple_repeat Simple_repeat 1 60 0 1168 88 7 166 chr1 112077518 112077801 -130586552 + MER4A LTR ERV1 185 422 -242 1612 72 63 13 chr1 112077810 112078047 -130586306 - L1PA8 LINE L1 -2 6170 5922 901 79 171 18 chr1 112078071 112078235 -130586118 + MER4C LTR ERV1 277 465 0 1457 181 4 4 chr1 112078236 112078501 -130585852 + MER21A-int LTR ERV1 3927 4191 0 1490 170 49 18 chr1 112078501 112078960 -130585393 + MER21A LTR ERV1 1 494 -369 212 191 0 24 chr1 112078961 112078980 -130585373 + GA-rich Low_complexity Low_complexity 2 20 -22 2254 119 0 0 chr1 112078980 112079290 -130585063 + AluSg SINE Alu 1 310 0 212 191 0 24 chr1 112079290 112079312 -130585041 + GA-rich Low_complexity Low_complexity 20 42 0 1124 78 17 11 chr1 112079312 112079491 -130584862 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2137 130 0 7 chr1 112081180 112081479 -130582874 - AluSx SINE Alu -15 297 1 290 325 64 62 chr1 112081908 112082359 -130581994 + L2 LINE L2 2627 3074 -198 4583 81 0 20 chr1 112083425 112083905 -130580448 - L1PA13 LINE L1 -5 6158 5693 1667 168 58 0 chr1 112083905 112084179 -130580174 - AluSx SINE Alu -22 290 1 4583 81 0 20 chr1 112084179 112084356 -130579997 - L1PA13 LINE L1 -470 5693 5514 646 255 27 21 chr1 112084419 112084607 -130579746 + MER58A DNA MER1_type 18 206 -18 1702 178 93 3 chr1 112084631 112084986 -130579367 - MLT1D LTR MaLR -117 388 2 268 194 75 0 chr1 112086981 112087048 -130577305 + MIR SINE MIR 78 149 -113 374 259 19 37 chr1 112088662 112088770 -130575583 + MIR3 SINE MIR 81 186 -22 334 252 47 24 chr1 112088929 112089056 -130575297 - L1ME4a LINE L1 -28 6093 5964 266 153 0 56 chr1 112089494 112089566 -130574787 + A-rich Low_complexity Low_complexity 3 70 0 241 260 156 26 chr1 112089689 112089881 -130574472 - L1ME4a LINE L1 -197 5924 5708 1120 163 57 0 chr1 112090136 112090345 -130574008 + L1PB1 LINE L1 1 221 -6642 14677 185 38 16 chr1 112090477 112095018 -130569335 + L1PB1 LINE L1 203 5138 -1729 219 36 0 0 chr1 112095018 112095046 -130569307 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 14677 185 38 16 chr1 112095046 112096784 -130567569 + L1PB1 LINE L1 5138 6836 -31 1816 171 84 26 chr1 112096784 112097311 -130567042 - MLT2A2 LTR ERVL 0 554 1 184 75 25 25 chr1 112097341 112097381 -130566972 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1341 228 67 28 chr1 112097497 112097857 -130566496 + MLT1A2 LTR MaLR 1 374 0 2797 211 10 4 chr1 112097858 112098476 -130565877 + MLT1A2-int LTR MaLR 2 667 -704 1207 199 81 7 chr1 112098476 112098758 -130565595 + MLT2B1 LTR ERVL 1 315 -239 209 397 0 0 chr1 112099039 112099117 -130565236 + L2 LINE L2 2244 2321 -993 2505 59 3 3 chr1 112099144 112099449 -130564904 - AluY SINE Alu -6 305 1 279 373 0 25 chr1 112099754 112099872 -130564481 + L3 LINE CR1 1462 1576 -1 741 238 222 14 chr1 112100108 112100469 -130563884 + MLT1J LTR MaLR 36 471 -40 528 264 176 23 chr1 112100706 112100922 -130563431 - MIR SINE MIR -6 256 8 5040 163 34 30 chr1 112101036 112102185 -130562168 - L1MA7 LINE L1 -4 6287 5133 2116 124 0 10 chr1 112102825 112103132 -130561221 - AluSx SINE Alu -1 311 8 3451 87 21 5 chr1 112104105 112104542 -130559811 - MLT2A1 LTR ERVL 0 444 1 23665 70 12 5 chr1 112104542 112107522 -130556831 - HERVL-A1 LTR ERVL 0 5654 2656 5637 95 19 1 chr1 112107522 112108292 -130556061 + THE1A-int LTR MaLR 796 1579 -1 2880 90 3 0 chr1 112108293 112108647 -130555706 + THE1A LTR MaLR 1 355 0 354 339 43 48 chr1 112108813 112108999 -130555354 - MIR SINE MIR -71 191 7 360 229 57 38 chr1 112109018 112109123 -130555230 - MER5A DNA MER1_type -22 167 61 237 284 55 39 chr1 112109019 112109146 -130555207 + MER5A DNA MER1_type 35 163 -26 * 711 136 0 0 chr1 112110929 112111032 -130553321 - FRAM SINE Alu -6 170 68 371 261 71 38 chr1 112111323 112111507 -130552846 + L1MC5 LINE L1 7725 7914 -47 3186 239 51 19 chr1 112113589 112114512 -130549841 - L1ME1 LINE L1 -72 6094 5122 2350 167 123 11 chr1 112114512 112114966 -130549387 - MLT1D LTR MaLR 0 505 1 3186 239 51 19 chr1 112114966 112115291 -130549062 - L1ME1 LINE L1 -1044 5122 4809 285 326 112 30 chr1 112115367 112115600 -130548753 + L2 LINE L2 2806 3057 -215 201 305 228 36 chr1 112116124 112116291 -130548062 - MIR SINE MIR -40 222 24 1757 156 45 0 chr1 112117296 112117584 -130546769 - AluJb SINE Alu -11 301 1 424 274 51 56 chr1 112118108 112118342 -130546011 - MLT1L LTR MaLR -14 601 369 2153 163 19 32 chr1 112118619 112118988 -130545365 - THE1B LTR MaLR 0 364 1 12443 96 7 1 chr1 112118988 112120559 -130543794 - THE1B-int LTR MaLR 0 1580 1 2445 104 46 52 chr1 112120559 112120925 -130543428 - THE1B LTR MaLR 0 364 1 1077 152 67 6 chr1 112121368 112121546 -130542807 - MER5A DNA MER1_type 0 189 1 362 330 21 47 chr1 112121582 112121773 -130542580 + MER5A DNA MER1_type 3 188 -1 * 381 261 25 83 chr1 112121618 112121775 -130542578 - MER5A DNA MER1_type -28 161 14 301 298 46 40 chr1 112121870 112122021 -130542332 + MIR SINE MIR 1 152 -110 931 83 0 0 chr1 112122071 112122191 -130542162 - THE1B LTR MaLR -49 315 196 253 342 114 9 chr1 112123281 112123395 -130540958 - MIR3 SINE MIR -73 135 10 388 265 191 4 chr1 112123860 112124090 -130540263 - HAL1 LINE L1 -8 2499 2227 1013 152 0 0 chr1 112124092 112124243 -130540110 - FRAM SINE Alu -8 168 18 268 239 8 92 chr1 112124760 112124890 -130539463 - L1MC5 LINE L1 -10 7951 7833 309 320 20 27 chr1 112124913 112125060 -130539293 + CT-rich Low_complexity Low_complexity 4 149 0 732 234 112 79 chr1 112126438 112126982 -130537371 + MLT1G1 LTR MaLR 1 530 -25 310 238 75 12 chr1 112126994 112127074 -130537279 + MER21B LTR ERV1 12 96 -767 3574 211 54 16 chr1 112127156 112127932 -130536421 + MER21B LTR ERV1 43 848 -15 209 286 71 41 chr1 112128004 112128102 -130536251 + L2 LINE L2 2212 2312 -1002 1621 174 10 27 chr1 112128321 112128620 -130535733 + AluJb SINE Alu 11 304 -8 1647 139 24 4 chr1 112129167 112129504 -130534849 - L1P5 LINE L1 -625 5526 5185 777 149 8 8 chr1 112129506 112129640 -130534713 + MER50 LTR ERV1 550 683 -51 6695 191 50 10 chr1 112129648 112130898 -130533455 - MER21A-int LTR ERV1 -1331 2860 1560 1598 164 68 41 chr1 112130898 112131263 -130533090 - THE1C LTR MaLR 0 375 1 7597 196 47 18 chr1 112131271 112131608 -130532745 - MER21A-int LTR ERV1 -2293 4465 4139 2223 115 0 3 chr1 112131608 112131903 -130532450 - AluSg SINE Alu -16 294 1 7597 196 47 18 chr1 112131903 112132987 -130531366 - MER21A-int LTR ERV1 -2619 4139 3087 5353 53 13 0 chr1 112132987 112133624 -130530729 + L1PA6 LINE L1 5506 6150 -4 7597 196 47 18 chr1 112133624 112133720 -130530633 - MER21A-int LTR ERV1 -3671 3087 1 2325 137 21 88 chr1 112133720 112133763 -130530590 - MER21A LTR ERV1 0 931 887 4059 135 31 70 chr1 112133763 112134482 -130529871 - LTR8 LTR ERV1 0 691 1 2325 137 21 88 chr1 112134482 112134904 -130529449 - MER21A LTR ERV1 -44 887 497 4192 142 46 7 chr1 112134904 112135599 -130528754 + MER50 LTR ERV1 1 722 -12 274 111 0 0 chr1 112135599 112135635 -130528718 + MER50-int LTR ERV1 7 42 -7163 445 167 0 0 chr1 112135637 112135715 -130528638 - MER21B LTR ERV1 -459 404 327 291 270 56 79 chr1 112136826 112136952 -130527401 + MIR SINE MIR 30 152 -56 2061 124 17 0 chr1 112136984 112137282 -130527071 - AluSx SINE Alu -9 303 1 222 333 159 16 chr1 112137931 112138057 -130526296 - L2 LINE L2 0 3272 3129 2067 117 21 0 chr1 112138084 112138367 -130525986 + AluJo SINE Alu 11 299 -13 609 190 153 0 chr1 112138367 112138530 -130525823 + Tigger4(Zombi) DNA MER2_type 2544 2731 0 407 304 114 39 chr1 112138678 112139312 -130525041 + L1ME3A LINE L1 1060 1740 -4656 846 159 53 13 chr1 112139448 112139599 -130524754 + FRAM SINE Alu 1 157 -19 670 295 72 63 chr1 112140610 112141194 -130523159 + L1ME3A LINE L1 3326 3903 -2312 1757 151 14 7 chr1 112141194 112141507 -130522846 + AluJb SINE Alu 1 315 0 670 295 72 63 chr1 112141507 112141556 -130522797 + L1ME3A LINE L1 3903 3950 -2265 1658 196 3 13 chr1 112141556 112141857 -130522496 - AluJb SINE Alu -14 298 1 670 295 72 63 chr1 112141857 112142003 -130522350 + L1ME3A LINE L1 3950 4093 -2122 2230 112 7 0 chr1 112142003 112142306 -130522047 - AluSx SINE Alu -7 305 1 670 295 72 63 chr1 112142306 112142460 -130521893 + L1ME3A LINE L1 4093 4244 -1971 190 0 67 0 chr1 112142460 112142490 -130521863 + (CAA)n Simple_repeat Simple_repeat 2 33 0 670 295 72 63 chr1 112142490 112142884 -130521469 + L1ME3A LINE L1 4244 4671 -1544 797 287 69 45 chr1 112142993 112143704 -130520649 + L1ME3A LINE L1 5459 6186 -53 450 265 0 0 chr1 112144683 112144781 -130519572 - L2 LINE L2 0 3272 3175 5223 124 17 26 chr1 112144889 112146001 -130518352 + L1PA16 LINE L1 4550 5656 -510 2352 110 7 0 chr1 112146001 112146311 -130518042 + AluSx SINE Alu 1 312 0 5223 124 17 26 chr1 112146311 112146818 -130517535 + L1PA16 LINE L1 5656 6166 0 1572 246 50 47 chr1 112148239 112148775 -130515578 - MLT1F1 LTR MaLR 0 567 5 316 322 65 45 chr1 112149536 112149735 -130514618 - L2 LINE L2 -16 3256 3054 1304 228 90 28 chr1 112150243 112150678 -130513675 - MLT1C LTR MaLR 0 467 6 21 57 0 0 chr1 112150750 112150785 -130513568 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr1 112151157 112151192 -130513161 + AT_rich Low_complexity Low_complexity 1 35 0 3227 211 35 6 chr1 112151552 112152382 -130511971 + L1 LINE L1 4140 4993 -1153 851 118 0 78 chr1 112152383 112152536 -130511817 + L1PA16 LINE L1 6017 6157 -9 2304 94 3 3 chr1 112152614 112152923 -130511430 + AluSc SINE Alu 1 309 0 2511 215 18 55 chr1 112152958 112153674 -130510679 - L1MB3 LINE L1 -32 6151 5462 1735 283 131 9 chr1 112154880 112155537 -130508816 + LTR41 LTR ERVL 1 737 -36 220 195 0 0 chr1 112155840 112155881 -130508472 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 447 68 0 0 chr1 112156193 112156252 -130508101 + (TG)n Simple_repeat Simple_repeat 1 59 0 2108 295 46 58 chr1 112157368 112158615 -130505738 + MER110-int LTR ERV1 3416 4647 0 1017 268 13 20 chr1 112158683 112158982 -130505371 - MLT1E LTR MaLR 0 593 297 239 231 0 0 chr1 112159066 112159118 -130505235 - MLT1E LTR MaLR -454 139 88 279 238 12 25 chr1 112159181 112159261 -130505092 + MER110 LTR ERV1 1 79 -412 1775 211 108 68 chr1 112159457 112160002 -130504351 - MLT1F1 LTR MaLR 0 567 1 266 188 0 0 chr1 112160586 112160634 -130503719 - MLT2B1 LTR ERVL 0 397 350 321 211 53 8 chr1 112160644 112160777 -130503576 + (TATAA)n Simple_repeat Simple_repeat 5 143 0 1112 224 99 31 chr1 112160888 112161210 -130503143 - MLT2B1 LTR ERVL -176 344 1 1684 195 47 25 chr1 112162142 112162496 -130501857 - MER21B LTR ERV1 -2 861 500 1994 194 44 30 chr1 112162496 112162991 -130501362 - MER4D LTR ERV1 -2 901 400 1083 138 14 46 chr1 112162991 112163209 -130501144 - MER30 DNA MER1_type 0 230 20 1963 220 110 30 chr1 112163237 112163892 -130500461 + MER50 LTR ERV1 28 734 0 1232 176 6 118 chr1 112163915 112164262 -130500091 - MER4E LTR ERV1 -471 308 1 * 1454 186 19 12 chr1 112164262 112164719 -130499634 - MER21B LTR ERV1 -361 502 7 1751 179 179 26 chr1 112164721 112165251 -130499102 + LTR36 LTR ERV1 1 611 0 1939 143 48 59 chr1 112165570 112166011 -130498342 - LTR23 LTR ERV1 -1 436 1 1954 122 37 0 chr1 112166185 112166475 -130497878 - AluSx SINE Alu 0 302 3 222 37 0 0 chr1 112167083 112167110 -130497243 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 22 35 0 0 chr1 112168893 112168922 -130495431 + AT_rich Low_complexity Low_complexity 1 29 0 1206 185 102 38 chr1 112169405 112169718 -130494635 + LTR54B LTR ERV1 1 333 -165 495 215 48 59 chr1 112169693 112169731 -130494622 + MER57A LTR ERV1 216 253 -150 * 1635 162 44 34 chr1 112169731 112170027 -130494326 - AluSg SINE Alu -11 299 1 495 215 48 59 chr1 112170027 112170174 -130494179 + MER57A LTR ERV1 253 399 -4 494 180 62 31 chr1 112170314 112170442 -130493911 + MER57A-int LTR ERV1 116 247 -7290 471 158 53 11 chr1 112170504 112170599 -130493754 + MER57A-int LTR ERV1 149 247 -7290 1031 196 10 16 chr1 112171139 112171333 -130493020 - AluJ SINE Alu 0 312 120 9567 202 31 13 chr1 112171333 112173037 -130491316 - L1PA16 LINE L1 -2 6164 4492 188 35 35 0 chr1 112173037 112173066 -130491287 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 9567 202 31 13 chr1 112173066 112174695 -130489658 - L1PA16 LINE L1 -1674 4492 2763 2156 123 35 41 chr1 112174695 112175061 -130489292 + THE1B LTR MaLR 1 364 0 9567 202 31 13 chr1 112175061 112175342 -130489011 - L1PA16 LINE L1 -3403 2763 2489 24 0 0 0 chr1 112175347 112175371 -130488982 + AT_rich Low_complexity Low_complexity 1 24 0 565 167 0 75 chr1 112175371 112175491 -130488862 - AluJ SINE Alu -188 124 14 927 213 46 53 chr1 112175500 112175914 -130488439 + MER57A-int LTR ERV1 1192 1602 -3334 529 201 51 117 chr1 112176001 112176275 -130488078 - LTR48 LTR ERV1 -10 777 522 334 246 156 38 chr1 112176242 112176453 -130487900 - LTR48B LTR ERV1 -281 363 128 * 360 264 38 28 chr1 112176426 112176532 -130487821 - MER34 LTR ERV1 -430 112 6 306 0 0 0 chr1 112176549 112176583 -130487770 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1975 152 0 0 chr1 112176583 112176860 -130487493 - AluSx SINE Alu -33 279 3 587 201 39 43 chr1 112176997 112177231 -130487122 + MER57A-int LTR ERV1 1702 1934 -3002 367 278 83 0 chr1 112177498 112177631 -130486722 + MER57A-int LTR ERV1 2417 2560 -2376 535 120 0 0 chr1 112177656 112177731 -130486622 - AluJ/FRAM SINE Alu -21 291 217 5381 217 115 33 chr1 112177731 112178129 -130486224 + MER57A-int LTR ERV1 2565 2929 -2007 1551 183 60 28 chr1 112178129 112178414 -130485939 - AluJb SINE Alu -18 294 1 5381 217 115 33 chr1 112178414 112178614 -130485739 + MER57A-int LTR ERV1 2929 3111 -1825 1465 180 41 44 chr1 112178614 112178908 -130485445 - AluJb SINE Alu -19 293 1 5381 217 115 33 chr1 112178908 112178975 -130485378 + MER57A-int LTR ERV1 3111 3171 -1765 2145 102 7 26 chr1 112178975 112179278 -130485075 - AluSq SINE Alu -16 297 1 5381 217 115 33 chr1 112179278 112180456 -130483897 + MER57A-int LTR ERV1 3171 4561 -375 2112 137 3 0 chr1 112180789 112181088 -130483265 + AluSq SINE Alu 1 300 -13 289 192 0 0 chr1 112181416 112181468 -130482885 + LTR30 LTR ERV1 1 52 -670 1124 152 114 5 chr1 112181468 112181678 -130482675 + LTR12 LTR ERV1 53 285 -429 264 250 0 0 chr1 112181679 112181747 -130482606 + LTR30 LTR ERV1 553 620 -102 732 140 4 0 chr1 112181747 112181874 -130482479 + LTR12 LTR ERV1 45 584 -130 25390 120 8 15 chr1 112181890 112186733 -130477620 + HERV9 LTR ERV1 54 4944 -3455 1906 145 77 41 chr1 112186734 112187532 -130476821 + HERV17 LTR ERV1 708 1740 -5156 * 5384 118 5 0 chr1 112187531 112188300 -130476053 + HERV17 LTR ERV1 7627 8399 0 241 231 0 0 chr1 112188300 112188352 -130476001 + LTR30 LTR ERV1 1 52 -670 910 146 152 0 chr1 112188365 112188529 -130475824 + LTR12 LTR ERV1 89 277 -437 329 222 40 30 chr1 112188529 112188628 -130475725 + LTR30 LTR ERV1 544 643 -79 708 144 0 0 chr1 112188629 112188733 -130475620 + LTR12 LTR ERV1 481 584 -130 264 59 0 0 chr1 112189576 112189610 -130474743 + (TG)n Simple_repeat Simple_repeat 2 35 0 1860 256 74 21 chr1 112189716 112190231 -130474122 - MLT1F LTR MaLR 0 542 1 646 313 153 20 chr1 112191361 112191754 -130472599 + MLT1J LTR MaLR 25 469 -42 274 332 123 5 chr1 112193145 112193351 -130471002 - MIR SINE MIR -21 241 16 27 0 0 0 chr1 112194780 112194807 -130469546 + AT_rich Low_complexity Low_complexity 1 27 0 261 255 123 9 chr1 112194926 112195032 -130469321 + MIR SINE MIR 145 262 0 275 328 112 46 chr1 112195055 112195296 -130469057 + L2 LINE L2 2592 2848 -466 31 68 0 0 chr1 112195385 112195444 -130468909 + AT_rich Low_complexity Low_complexity 1 59 0 396 179 63 0 chr1 112195566 112195661 -130468692 - L1MB4 LINE L1 0 6180 6080 237 65 0 0 chr1 112195863 112195894 -130468459 + (T)n Simple_repeat Simple_repeat 1 31 0 8078 12 0 0 chr1 112196053 112197767 -130466586 - L1HS LINE L1 0 6155 4442 * 9006 26 0 0 chr1 112197765 112198849 -130465504 + L1P LINE L1 2790 3873 -2273 251 231 60 97 chr1 112199171 112199305 -130465048 + LTR37A LTR ERV1 95 223 -203 617 75 0 11 chr1 112199384 112199477 -130464876 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 1102 191 44 28 chr1 112199492 112199743 -130464610 - AluJo SINE Alu -15 297 43 4293 156 25 10 chr1 112199772 112200579 -130463774 - L1MA4 LINE L1 -11 6289 5471 3391 171 11 9 chr1 112200579 112201247 -130463106 - L1MA4 LINE L1 -1058 5088 4420 421 131 0 0 chr1 112201347 112201408 -130462945 - LTR12 LTR ERV1 -162 552 492 286 235 29 59 chr1 112201408 112201510 -130462843 - LTR30 LTR ERV1 -92 620 379 3229 248 32 17 chr1 112201523 112202312 -130462041 - L1P LINE L1 -2568 3578 2767 2143 123 35 41 chr1 112202312 112202678 -130461675 + THE1B LTR MaLR 1 364 0 3229 248 32 17 chr1 112202678 112202944 -130461409 - L1P LINE L1 -3379 2767 2507 29 47 0 0 chr1 112202945 112202988 -130461365 + AT_rich Low_complexity Low_complexity 1 43 0 611 150 0 75 chr1 112202988 112203108 -130461245 - FLAM_C SINE Alu -19 124 14 1013 213 46 53 chr1 112203117 112203531 -130460822 + Harlequin LTR ERV1 1192 1602 -3334 604 201 51 117 chr1 112203618 112203892 -130460461 - LTR48 LTR ERV1 -10 777 522 382 251 156 38 chr1 112203859 112204070 -130460283 - LTR48B LTR ERV1 -281 363 128 * 391 264 38 28 chr1 112204043 112204149 -130460204 - MER34 LTR ERV1 -430 112 6 306 0 0 0 chr1 112204166 112204200 -130460153 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1960 152 0 0 chr1 112204200 112204477 -130459876 - AluSx SINE Alu -33 279 3 636 201 39 43 chr1 112204614 112204848 -130459505 + Harlequin LTR ERV1 1702 1934 -3002 284 241 318 8 chr1 112204895 112205247 -130459106 + Harlequin LTR ERV1 2100 2560 -2376 522 122 0 0 chr1 112205272 112205346 -130459007 - AluJ/FRAM SINE Alu -22 290 217 5947 215 115 33 chr1 112205346 112205744 -130458609 + Harlequin LTR ERV1 2565 2929 -2007 1510 182 56 31 chr1 112205744 112206030 -130458323 - AluJb SINE Alu -19 293 1 5947 215 115 33 chr1 112206030 112206230 -130458123 + Harlequin LTR ERV1 2929 3111 -1825 1419 183 41 44 chr1 112206230 112206525 -130457828 - AluJb SINE Alu -18 294 1 5947 215 115 33 chr1 112206525 112206592 -130457761 + Harlequin LTR ERV1 3111 3171 -1765 2114 106 7 23 chr1 112206592 112206894 -130457459 - AluSq SINE Alu -16 297 1 5947 215 115 33 chr1 112206894 112208072 -130456281 + Harlequin LTR ERV1 3171 4561 -375 2070 138 3 0 chr1 112208405 112208703 -130455650 + AluSq SINE Alu 1 299 -14 306 192 0 0 chr1 112209031 112209083 -130455270 + LTR30 LTR ERV1 1 52 -670 1227 148 114 5 chr1 112209083 112209293 -130455060 + LTR12 LTR ERV1 53 285 -429 286 235 29 59 chr1 112209294 112209396 -130454957 + LTR30 LTR ERV1 379 620 -92 691 126 2 18 chr1 112209396 112209513 -130454840 + LTR12 LTR ERV1 313 584 -130 * 26667 122 8 16 chr1 112209505 112214383 -130449970 + HERV9 LTR ERV1 54 4980 -3419 2027 191 149 52 chr1 112214377 112215148 -130449205 + Harlequin LTR ERV1 895 1740 -5156 * 5384 118 5 0 chr1 112215147 112215916 -130448437 + Harlequin LTR ERV1 7627 8399 0 241 231 0 0 chr1 112215916 112215968 -130448385 + LTR30 LTR ERV1 1 52 -670 910 146 152 0 chr1 112215981 112216145 -130448208 + LTR12 LTR ERV1 89 277 -437 329 222 40 30 chr1 112216145 112216244 -130448109 + LTR30 LTR ERV1 544 643 -79 708 144 0 0 chr1 112216245 112216349 -130448004 + LTR12 LTR ERV1 481 584 -130 246 62 0 0 chr1 112217192 112217224 -130447129 + (TG)n Simple_repeat Simple_repeat 2 33 0 1852 256 72 21 chr1 112217330 112217846 -130446507 - MLT1F LTR MaLR 0 542 1 637 315 150 20 chr1 112218976 112219370 -130444983 + MLT1J LTR MaLR 25 469 -42 274 332 123 5 chr1 112220761 112220967 -130443386 - MIR SINE MIR -21 241 16 27 0 0 0 chr1 112222396 112222423 -130441930 + AT_rich Low_complexity Low_complexity 1 27 0 261 255 123 9 chr1 112222542 112222648 -130441705 + MIR SINE MIR 145 262 0 275 328 112 46 chr1 112222671 112222912 -130441441 + L2 LINE L2 2592 2848 -466 31 68 0 0 chr1 112223001 112223060 -130441293 + AT_rich Low_complexity Low_complexity 1 59 0 396 179 63 0 chr1 112223182 112223277 -130441076 - L1MB4 LINE L1 0 6180 6080 251 231 60 97 chr1 112223801 112223935 -130440418 + LTR37A LTR ERV1 95 223 -203 581 79 0 11 chr1 112224014 112224103 -130440250 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 1102 191 44 28 chr1 112224118 112224369 -130439984 - AluJo SINE Alu -15 297 43 4290 154 25 10 chr1 112224398 112225205 -130439148 - L1MA4 LINE L1 -11 6471 5653 13857 198 21 18 chr1 112225205 112226198 -130438155 - L1MA4 LINE L1 -1058 5270 4282 1595 163 7 55 chr1 112226198 112226505 -130437848 + AluJo SINE Alu 1 292 -20 13857 198 21 18 chr1 112226505 112226746 -130437607 - L1MA4 LINE L1 -2046 4282 4043 2157 126 126 11 chr1 112226746 112227128 -130437225 - MSTA LTR MaLR 0 428 3 13857 198 21 18 chr1 112227128 112231151 -130433202 - L1MA4 LINE L1 -2285 4043 3 369 192 72 16 chr1 112231152 112231277 -130433076 + LTR37B LTR ERV1 332 463 -5 333 0 0 0 chr1 112231684 112231721 -130432632 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 313 38 25 chr1 112231962 112232042 -130432311 + L2 LINE L2 2865 2945 -369 1225 127 14 72 chr1 112232326 112232547 -130431806 - AluJb SINE Alu -19 293 86 1015 240 49 57 chr1 112232603 112233116 -130431237 + MER39 LTR ERV1 5 648 0 2415 80 0 10 chr1 112233316 112233628 -130430725 + AluY SINE Alu 1 309 -2 1156 222 118 37 chr1 112234820 112235254 -130429099 - MLT1C LTR MaLR 0 467 6 741 223 111 23 chr1 112235976 112236234 -130428119 + MLT1H LTR MaLR 14 264 -302 645 271 128 18 chr1 112236820 112237093 -130427260 + MLT1H LTR MaLR 1 303 -246 287 201 109 98 chr1 112238007 112238181 -130426172 - L1ME LINE L1 -392 5729 5554 502 236 24 51 chr1 112238706 112238877 -130425476 + MIR SINE MIR 37 205 -57 311 160 0 0 chr1 112239110 112239160 -130425193 - Ricksha DNA DNA -2341 905 856 285 75 0 0 chr1 112239161 112239201 -130425152 + (CA)n Simple_repeat Simple_repeat 2 41 0 2088 245 26 11 chr1 112239224 112239677 -130424676 - MLT2B3 LTR ERVL -20 534 75 421 169 0 0 chr1 112239774 112239845 -130424508 - MLT2B3 LTR ERVL -483 71 1 302 298 38 30 chr1 112241059 112241190 -130423163 - L3 LINE CR1 -80 1497 1366 1979 134 7 17 chr1 112241255 112241553 -130422800 - AluSx SINE Alu -17 295 1 2603 164 31 7 chr1 112241635 112242081 -130422272 - MSTB2 LTR MaLR 0 457 1 387 321 83 88 chr1 112242795 112243181 -130421172 - L3 LINE CR1 -245 1332 949 213 380 31 2 chr1 112243377 112243574 -130420779 - L3 LINE CR1 -861 716 471 21 0 0 0 chr1 112243620 112243641 -130420712 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 112244176 112244205 -130420148 + AT_rich Low_complexity Low_complexity 1 29 0 313 303 69 14 chr1 112244301 112244446 -130419907 - LTR67 LTR ERVL 0 557 405 1027 76 0 0 chr1 112245207 112245338 -130419015 + AluSg/x SINE Alu 181 311 -1 187 294 0 0 chr1 112245980 112246031 -130418322 - MER5B DNA MER1_type 0 178 128 480 273 25 8 chr1 112246065 112246186 -130418167 + MER5B DNA MER1_type 49 171 -7 433 253 34 0 chr1 112246510 112246656 -130417697 - L1ME4a LINE L1 -203 5918 5768 1483 193 31 91 chr1 112246685 112246873 -130417480 + MSTB1 LTR MaLR 5 203 -229 978 138 0 6 chr1 112246873 112247033 -130417320 + L1PB1 LINE L1 5991 6149 -2 1483 193 31 91 chr1 112247033 112247295 -130417058 + MSTB1 LTR MaLR 203 428 -4 2014 164 17 98 chr1 112247531 112248012 -130416341 - L1ME4a LINE L1 -368 5798 5357 1455 254 8 17 chr1 112248015 112248366 -130415987 - MLT1A1 LTR MaLR -6 359 12 708 230 59 18 chr1 112248376 112248598 -130415755 - L1ME4a LINE L1 -774 5372 5142 1054 328 97 26 chr1 112249347 112249884 -130414469 + MLT1K LTR MaLR 3 577 -11 333 368 137 20 chr1 112250221 112250520 -130413833 + L2 LINE L2 2918 3251 -21 556 157 19 3 chr1 112250705 112250832 -130413521 - MLT1B LTR MaLR -2 388 246 228 330 64 11 chr1 112252309 112252403 -130411950 - MIR SINE MIR -140 122 24 233 232 0 18 chr1 112252780 112252836 -130411517 - MIR SINE MIR -16 246 192 730 234 204 50 chr1 112253296 112253959 -130410394 - LTR50 LTR ERVL 0 795 51 309 294 196 43 chr1 112254117 112254393 -130409960 + MLT1K LTR MaLR 158 475 -113 51 58 0 0 chr1 112254613 112254699 -130409654 + AT_rich Low_complexity Low_complexity 1 86 0 2013 115 3 14 chr1 112254711 112254998 -130409355 + AluSp SINE Alu 3 286 -27 180 0 0 0 chr1 112254998 112255018 -130409335 + (TA)n Simple_repeat Simple_repeat 2 21 0 757 209 78 47 chr1 112255026 112255322 -130409031 + L1MC5 LINE L1 7609 7913 -48 2445 218 23 17 chr1 112255712 112256236 -130408117 + MER77 LTR ERV1 54 580 -25 249 266 184 0 chr1 112256479 112256588 -130407765 + MER21B LTR ERV1 734 862 -1 289 273 37 93 chr1 112256737 112256953 -130407400 + ERVL LTR ERVL 1711 1914 -3850 1211 358 87 26 chr1 112257013 112258061 -130406292 + ERVL LTR ERVL 2356 3472 -2013 455 240 16 47 chr1 112258061 112258190 -130406163 + MER94 DNA DNA 1 125 -9 270 265 85 6 chr1 112258537 112258722 -130405631 + ERVL LTR ERVL 4056 4242 -1412 404 288 164 43 chr1 112259166 112259489 -130404864 + LTR67 LTR ERVL 92 453 -104 27 0 0 0 chr1 112260314 112260341 -130404012 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr1 112261508 112261534 -130402819 + AT_rich Low_complexity Low_complexity 1 26 0 2588 161 37 2 chr1 112261628 112262089 -130402264 - Tigger1 DNA MER2_type -26 2392 1916 598 61 0 92 chr1 112262089 112262187 -130402166 + L1PA7 LINE L1 6057 6145 -9 520 187 6 22 chr1 112262197 112262379 -130401974 + (TA)n Simple_repeat Simple_repeat 2 180 0 444 194 42 0 chr1 112262435 112262579 -130401774 + (TA)n Simple_repeat Simple_repeat 1 150 0 308 253 11 32 chr1 112262579 112262674 -130401679 + L1MC4 LINE L1 6612 6704 -1338 28 60 0 15 chr1 112262674 112262711 -130401642 + AT_rich Low_complexity Low_complexity 1 38 -28 881 10 0 118 chr1 112262711 112262915 -130401438 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 28 60 0 15 chr1 112262915 112262944 -130401409 + AT_rich Low_complexity Low_complexity 38 66 0 246 96 82 0 chr1 112262944 112263017 -130401336 + (TA)n Simple_repeat Simple_repeat 2 80 0 228 222 22 44 chr1 112263156 112263246 -130401107 + L1MC4 LINE L1 6614 6701 -1341 254 146 49 0 chr1 112263246 112263328 -130401025 + (TA)n Simple_repeat Simple_repeat 1 86 0 561 147 53 0 chr1 112263342 112263512 -130400841 + (TA)n Simple_repeat Simple_repeat 2 180 0 750 118 53 0 chr1 112263531 112263854 -130400499 + (TA)n Simple_repeat Simple_repeat 1 340 0 651 144 53 0 chr1 112263871 112264212 -130400141 + (TA)n Simple_repeat Simple_repeat 1 358 0 11614 134 21 15 chr1 112264226 112265509 -130398844 - Tigger1 DNA MER2_type -511 1907 609 6699 66 38 0 chr1 112265509 112266373 -130397980 + MER11D LTR ERVK 1 897 0 11614 134 21 15 chr1 112266373 112266986 -130397367 - Tigger1 DNA MER2_type -1809 609 1 1375 189 73 0 chr1 112267291 112267456 -130396897 - AluJb SINE Alu -16 296 102 483 63 0 0 chr1 112267456 112267519 -130396834 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1375 189 73 0 chr1 112267519 112267628 -130396725 - AluJb SINE Alu -210 102 2 258 346 89 43 chr1 112267664 112267992 -130396361 + L2 LINE L2 2712 3102 -170 395 270 137 65 chr1 112269432 112269754 -130394599 + L2 LINE L2 1487 1831 -1483 1071 296 147 13 chr1 112269812 112269882 -130394471 + MLT1H LTR MaLR 41 100 -449 1944 180 86 5 chr1 112269882 112270276 -130394077 + MSTB LTR MaLR 1 426 0 1071 296 147 13 chr1 112270276 112270654 -130393699 + MLT1H LTR MaLR 100 549 0 1674 329 70 39 chr1 112270659 112270952 -130393401 + L2 LINE L2 1844 2127 -1186 2165 111 3 0 chr1 112270952 112271249 -130393104 - AluSq SINE Alu -15 298 1 1674 329 70 39 chr1 112271249 112272370 -130391983 + L2 LINE L2 2127 3312 -1 417 287 120 48 chr1 112273455 112273622 -130390731 + MIR SINE MIR 84 262 0 268 200 92 0 chr1 112275334 112275399 -130388954 + L1ME3A LINE L1 4115 4185 -1961 1729 242 70 14 chr1 112275411 112275853 -130388500 - MLT1D LTR MaLR -36 469 3 892 294 130 12 chr1 112276068 112277003 -130387350 + L1ME3A LINE L1 4909 5955 -215 267 163 31 31 chr1 112277212 112277310 -130387043 + (CATA)n Simple_repeat Simple_repeat 3 100 0 579 267 34 9 chr1 112278293 112278459 -130385894 - MIR3 SINE MIR -64 144 9 31 0 0 0 chr1 112278644 112278675 -130385678 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 112279266 112279288 -130385065 + AT_rich Low_complexity Low_complexity 1 22 0 728 319 155 11 chr1 112280722 112281153 -130383200 + L2 LINE L2 2464 2831 -482 3088 145 24 43 chr1 112281153 112281255 -130383098 + LTR24B LTR ERV1 1 103 -473 2348 71 7 0 chr1 112281255 112281552 -130382801 - AluSp SINE Alu -14 299 1 3088 145 24 43 chr1 112281552 112282035 -130382318 + LTR24B LTR ERV1 103 575 -1 728 319 155 11 chr1 112282035 112282334 -130382019 + L2 LINE L2 2831 3310 -3 3233 123 75 14 chr1 112282408 112282968 -130381385 - LTR49 LTR ERV1 -1 594 1 2511 61 0 3 chr1 112285388 112285700 -130378653 - AluY SINE Alu 0 311 1 219 277 138 0 chr1 112286267 112286332 -130378021 + MIR SINE MIR 52 125 -83 252 86 0 0 chr1 112286544 112286579 -130377774 + (CA)n Simple_repeat Simple_repeat 2 36 0 1688 175 3 7 chr1 112289229 112289515 -130374838 + AluJo SINE Alu 3 287 -25 722 290 157 29 chr1 112289550 112290022 -130374331 - L2 LINE L2 -45 3268 2732 1383 289 50 20 chr1 112290025 112290530 -130373823 - L1ME3A LINE L1 -135 6035 5516 1231 236 181 74 chr1 112290530 112291017 -130373336 + MLT1E LTR MaLR 42 580 -13 855 281 119 40 chr1 112291022 112291516 -130372837 - L1ME3A LINE L1 -771 5375 4843 1414 308 57 20 chr1 112291516 112292006 -130372347 + MLT2E LTR ERVL 1 508 -120 710 228 40 71 chr1 112292076 112292158 -130372195 - L1ME3A LINE L1 -1301 4845 4762 2209 106 10 0 chr1 112292158 112292451 -130371902 - AluSx SINE Alu -14 298 3 710 228 40 71 chr1 112292451 112292692 -130371661 - L1ME3A LINE L1 -1384 4762 4532 230 336 37 9 chr1 112292712 112292819 -130371534 + L1 LINE L1 3566 3675 -2471 350 267 0 23 chr1 112293967 112294053 -130370300 + L2 LINE L2 2978 3061 -211 628 258 119 0 chr1 112294271 112294430 -130369923 - MER45A DNA AcHobo 0 178 1 9413 150 23 25 chr1 112294613 112295089 -130369264 - Tigger4(Zombi) DNA MER2_type 0 2731 2255 1740 185 0 13 chr1 112295089 112295397 -130368956 + AluJb SINE Alu 3 306 -6 9413 150 23 25 chr1 112295397 112296918 -130367435 - Tigger4(Zombi) DNA MER2_type -476 2255 2 576 352 60 36 chr1 112297117 112297398 -130366955 - L2 LINE L2 0 3272 2985 2239 179 64 27 chr1 112297768 112298253 -130366100 - MLT1D LTR MaLR 0 505 3 391 327 27 40 chr1 112298417 112298538 -130365815 + MIR SINE MIR 31 149 -113 2525 201 27 16 chr1 112298538 112299051 -130365302 + LTR53 LTR ERVL 1 519 0 391 327 27 40 chr1 112299051 112299152 -130365201 + MIR SINE MIR 149 250 -12 2481 119 18 5 chr1 112299160 112299548 -130364805 + MER39B LTR ERV1 1 393 -260 215 368 35 53 chr1 112300585 112300870 -130363483 + L2 LINE L2 2465 2744 -570 2560 186 5 0 chr1 112300888 112301312 -130363041 - MSTB LTR MaLR 0 426 1 239 279 15 15 chr1 112301458 112301526 -130362827 + L2 LINE L2 2945 3012 -260 198 342 0 94 chr1 112301674 112301791 -130362562 + L2 LINE L2 3163 3268 -4 413 309 113 6 chr1 112301797 112301965 -130362388 - MIR SINE MIR -29 233 48 634 209 29 12 chr1 112303310 112303482 -130360871 + MER104 DNA MER2_type 2 176 -4 503 263 43 70 chr1 112303924 112304110 -130360243 - MER5A DNA MER1_type -8 181 1 21 71 0 0 chr1 112304155 112304197 -130360156 + AT_rich Low_complexity Low_complexity 1 42 0 14540 132 20 15 chr1 112304337 112306743 -130357610 - Tigger1 DNA MER2_type 0 2418 1 2517 83 128 2 chr1 112307269 112307667 -130356686 - LTR7 LTR ERV1 -2 448 1 13982 84 10 3 chr1 112307667 112309598 -130354755 - HERVH LTR ERV1 0 7713 5769 1321 78 6 0 chr1 112309594 112309773 -130354580 - HERVH LTR ERV1 -3046 4667 4488 * 3251 133 0 6 chr1 112309777 112310280 -130354073 - HERVH LTR ERV1 -3722 3991 3492 891 120 63 0 chr1 112310270 112310412 -130353941 - HERVH LTR ERV1 -4423 3290 3140 * 14466 108 8 31 chr1 112310391 112313132 -130351221 - HERVH LTR ERV1 -4718 2995 1 2059 79 31 5 chr1 112313135 112313483 -130350870 - LTR7 LTR ERV1 -2 448 3 492 264 62 8 chr1 112315897 112316026 -130348327 - MIR3 SINE MIR -2 206 71 347 316 18 0 chr1 112316304 112316418 -130347935 - L2 LINE L2 -1 3312 3197 34 72 0 0 chr1 112317648 112317717 -130346636 + AT_rich Low_complexity Low_complexity 1 69 0 738 200 0 15 chr1 112317905 112318040 -130346313 + FLAM_C SINE Alu 1 133 0 269 303 7 52 chr1 112318151 112318247 -130346106 + L1 LINE L1 960 1048 -6050 1503 158 89 47 chr1 112318247 112318607 -130345746 + THE1C LTR MaLR 1 375 0 269 303 7 52 chr1 112318607 112318665 -130345688 + L1 LINE L1 1048 1107 -5991 1987 262 46 43 chr1 112319103 112320126 -130344227 + L1 LINE L1 1722 2759 -4409 * 2360 200 151 0 chr1 112320119 112320714 -130343639 + L1 LINE L1 5456 6140 -1027 1128 140 64 34 chr1 112320700 112320964 -130343389 + L1MA9 LINE L1 5953 6224 -88 * 3416 132 9 9 chr1 112320964 112321508 -130342845 - L1PA15 LINE L1 -8 6157 5614 948 108 7 0 chr1 112321508 112321647 -130342706 + L1PA15 LINE L1 5468 5607 -558 350 211 0 0 chr1 112321647 112321735 -130342618 + L1MA9 LINE L1 6221 6310 -2 317 314 87 13 chr1 112321778 112322007 -130342346 - L1ME LINE L1 -325 6239 5994 3053 238 47 41 chr1 112322122 112323490 -130340863 + L1MD1 LINE L1 4100 5479 -743 3088 200 34 5 chr1 112323495 112324164 -130340189 + L1MD1 LINE L1 5546 6234 -8 567 259 68 0 chr1 112324544 112324764 -130339589 - L1ME LINE L1 -1832 4708 4474 406 296 160 10 chr1 112324932 112325138 -130339215 - L1ME LINE L1 -3248 3292 3056 1913 286 77 82 chr1 112325138 112326779 -130337574 - HAL1 LINE L1 -639 1868 237 324 282 58 41 chr1 112326808 112327170 -130337183 - L1M4 LINE L1 -979 5167 4800 341 256 128 30 chr1 112327184 112327317 -130337036 - L1M4 LINE L1 -1538 4608 4463 27 29 0 0 chr1 112327338 112327372 -130336981 + AT_rich Low_complexity Low_complexity 1 34 0 421 234 21 0 chr1 112327482 112327576 -130336777 + L2 LINE L2 3218 3313 0 350 305 91 52 chr1 112327737 112327947 -130336406 - L1ME LINE L1 -3964 2576 2359 1929 131 6 51 chr1 112328932 112329282 -130335071 - MER1B DNA MER1_type 0 337 4 28 29 0 0 chr1 112329490 112329525 -130334828 + AT_rich Low_complexity Low_complexity 1 35 0 1917 262 87 45 chr1 112329657 112330641 -130333712 - L2 LINE L2 -142 3171 2148 1124 241 160 32 chr1 112330661 112330890 -130333463 - MER69B DNA AcHobo -1323 1203 1005 2195 109 0 0 chr1 112330890 112331183 -130333170 - AluSc SINE Alu -16 293 1 1124 241 160 32 chr1 112331183 112331456 -130332897 - MER69B DNA AcHobo -1521 1005 768 2154 121 3 0 chr1 112331456 112331753 -130332600 - AluSx SINE Alu -14 298 1 1124 241 160 32 chr1 112331753 112332260 -130332093 - MER69B DNA AcHobo -1758 768 1 2249 281 140 21 chr1 112332270 112333180 -130331173 - L2 LINE L2 -1170 2144 1127 1718 205 59 0 chr1 112333274 112333645 -130330708 + MSTD LTR MaLR 1 393 -3 342 0 0 0 chr1 112334852 112334890 -130329463 + (TG)n Simple_repeat Simple_repeat 2 39 0 1754 157 144 26 chr1 112335050 112335150 -130329203 + MSTA LTR MaLR 1 88 -340 3291 95 16 0 chr1 112335150 112335593 -130328760 + MLT2A2 LTR ERVL 1 450 -3 1754 157 144 26 chr1 112335593 112335875 -130328478 + MSTA LTR MaLR 88 428 0 8092 169 93 9 chr1 112335875 112337393 -130326960 + MSTA-int LTR MaLR 1 1645 -6 1782 194 95 0 chr1 112337398 112337789 -130326564 + MSTA LTR MaLR 1 428 0 5666 32 0 0 chr1 112338009 112338688 -130325665 - L1PA3 LINE L1 -1284 4862 4184 7534 30 0 1 chr1 112338688 112339086 -130325267 + L1PA3 LINE L1 4856 6152 -3 7554 30 0 1 chr1 112339086 112339986 -130324367 + L1PA3 LINE L1 5254 6152 -3 26 64 0 0 chr1 112340019 112340066 -130324287 + AT_rich Low_complexity Low_complexity 1 47 0 628 278 124 0 chr1 112340710 112340919 -130323434 + MIR SINE MIR 13 247 -15 1391 203 69 51 chr1 112340986 112341375 -130322978 - MSTD LTR MaLR 0 396 1 631 263 43 53 chr1 112343344 112343553 -130320800 - MIR SINE MIR 0 262 56 2292 96 3 10 chr1 112344637 112344951 -130319402 + AluSq SINE Alu 1 312 -1 295 278 80 106 chr1 112345637 112346025 -130318328 + L2 LINE L2 2152 2529 -785 207 0 0 0 chr1 112346174 112346197 -130318156 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 990 152 0 6 chr1 112346203 112346361 -130317992 - AluSg/x SINE Alu -36 274 118 6549 24 0 0 chr1 112346361 112347117 -130317236 - L1PA3 LINE L1 -14 6141 5386 771 171 20 20 chr1 112347117 112347263 -130317090 - AluSq/x SINE Alu -166 146 1 181 315 117 0 chr1 112347395 112347506 -130316847 + L2 LINE L2 2935 3058 -214 493 339 46 9 chr1 112347627 112347845 -130316508 - MIR SINE MIR -12 250 25 200 222 51 28 chr1 112347940 112348116 -130316237 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 263 225 22 60 chr1 112347993 112348175 -130316178 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 204 158 0 0 chr1 112348704 112348742 -130315611 + (TG)n Simple_repeat Simple_repeat 1 38 0 1931 159 0 3 chr1 112349024 112349332 -130315021 - AluSg SINE Alu -3 307 1 1389 193 10 100 chr1 112349423 112349822 -130314531 + MLT1A1 LTR MaLR 3 365 0 1636 226 24 39 chr1 112350313 112350804 -130313549 - MER31A LTR ERV1 -1 484 1 191 267 22 56 chr1 112350902 112350992 -130313361 + L3b LINE CR1 1293 1379 -204 2022 183 37 32 chr1 112353882 112354432 -130309921 + MLT2A2 LTR ERVL 1 554 0 180 0 0 0 chr1 112354573 112354593 -130309760 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 210 37 0 0 chr1 112354652 112354679 -130309674 + (CAG)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr1 112355246 112355270 -130309083 + AT_rich Low_complexity Low_complexity 1 24 0 183 227 76 30 chr1 112355892 112355958 -130308395 + L2 LINE L2 1748 1816 -1498 1093 201 163 7 chr1 112356546 112356840 -130307513 + MER2 DNA MER2_type 6 345 0 342 281 209 25 chr1 112356987 112357183 -130307170 + MIR SINE MIR 30 261 -1 246 366 105 12 chr1 112357428 112357600 -130306753 - MIR SINE MIR -42 220 33 225 196 0 0 chr1 112357618 112357669 -130306684 + CT-rich Low_complexity Low_complexity 2 52 0 9506 223 33 38 chr1 112357691 112364293 -130300060 - L1MA4 LINE L1 -3 6479 14 1586 224 61 60 chr1 112364749 112364910 -130299443 - MER34B LTR ERV1 -1 564 405 712 254 103 63 chr1 112364910 112365261 -130299092 + MLT1A1 LTR MaLR 1 365 0 1586 224 61 60 chr1 112365261 112365671 -130298682 - MER34B LTR ERV1 -160 405 11 1045 237 87 49 chr1 112365681 112366261 -130298092 - MER67B LTR ERV1 -68 563 3 410 169 24 12 chr1 112366261 112366341 -130298012 - MER67A LTR ERV1 -462 81 1 3145 172 44 61 chr1 112366658 112367499 -130296854 - LTR1 LTR ERV1 0 785 1 21 0 0 0 chr1 112367811 112367832 -130296521 + AT_rich Low_complexity Low_complexity 1 21 0 1849 101 16 92 chr1 112367893 112368390 -130295963 - AluSp SINE Alu 0 473 1 28 29 0 0 chr1 112368726 112368761 -130295592 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 112369222 112369243 -130295110 + AT_rich Low_complexity Low_complexity 1 21 0 4706 179 40 25 chr1 112369363 112371060 -130293293 - L1MA9 LINE L1 -271 7001 5276 1991 250 70 18 chr1 112371055 112372258 -130292095 - L1MA9 LINE L1 -4703 2334 5 * 534 352 16 11 chr1 112372786 112372968 -130291385 - MIR3 SINE MIR -7 201 19 181 354 62 0 chr1 112373088 112373153 -130291200 - L2 LINE L2 -7 3265 3197 2300 106 0 6 chr1 112373464 112373776 -130290577 + AluY SINE Alu 1 310 -1 332 238 98 57 chr1 112373985 112374107 -130290246 - LTR16A1 LTR ERVL -185 272 146 1023 239 133 17 chr1 112374275 112374576 -130289777 - MER58B DNA MER1_type 0 341 6 440 268 16 0 chr1 112374586 112374709 -130289644 - MIR SINE MIR -40 222 98 3108 121 65 23 chr1 112374755 112375278 -130289075 + LTR10A LTR ERV1 3 547 -62 365 256 73 0 chr1 112375302 112375384 -130288969 - MIR SINE MIR -174 88 1 1519 180 91 51 chr1 112375820 112376270 -130288083 + MER110A LTR ERV1 1 468 0 29 0 0 0 chr1 112378357 112378386 -130285967 + AT_rich Low_complexity Low_complexity 1 29 0 7555 26 0 0 chr1 112378386 112379533 -130284820 - L1PA3 LINE L1 -3 6152 5002 3481 121 65 0 chr1 112380338 112380858 -130283495 + MER41C LTR ERV1 1 554 0 626 331 57 14 chr1 112381078 112381374 -130282979 - L2 LINE L2 -20 3293 2985 * 635 288 21 56 chr1 112381361 112381594 -130282759 - MIR SINE MIR -33 229 5 25 0 0 0 chr1 112381859 112381884 -130282469 + AT_rich Low_complexity Low_complexity 1 25 0 1370 152 53 104 chr1 112382224 112382618 -130281735 + MLT1A2 LTR MaLR 1 374 0 1943 121 0 46 chr1 112382652 112382957 -130281396 + AluSc SINE Alu 3 293 -16 4435 166 26 7 chr1 112382966 112383799 -130280554 - L1MB1 LINE L1 -42 6126 5278 2111 119 47 39 chr1 112383806 112384166 -130280187 + THE1B LTR MaLR 2 364 0 301 286 34 50 chr1 112384170 112384289 -130280064 - L1ME3A LINE L1 -233 6006 5890 1986 110 82 0 chr1 112384321 112384602 -130279751 + AluSg SINE Alu 1 304 -6 454 272 6 41 chr1 112384633 112384802 -130279551 - L1ME3A LINE L1 -464 5775 5613 188 175 123 70 chr1 112386338 112386395 -130277958 + L2 LINE L2 2787 2846 -468 2692 30 0 0 chr1 112387198 112387498 -130276855 + AluY SINE Alu 1 300 -11 258 237 48 167 chr1 112388077 112388197 -130276156 + MIR SINE MIR 99 191 -71 2113 52 0 0 chr1 112388197 112388447 -130275906 + AluY SINE Alu 44 293 -18 258 237 48 167 chr1 112388447 112388512 -130275841 + MIR SINE MIR 191 262 0 565 342 88 62 chr1 112388781 112389542 -130274811 - L3 LINE CR1 -110 1467 687 21 82 0 0 chr1 112389565 112389614 -130274739 + AT_rich Low_complexity Low_complexity 1 49 0 347 238 49 43 chr1 112389624 112389788 -130274565 - L1ME4a LINE L1 -3 6118 5954 280 125 21 0 chr1 112389896 112389944 -130274409 - L1MA5 LINE L1 -11 6289 6241 2064 116 17 0 chr1 112390242 112390535 -130273818 - AluSq SINE Alu -15 298 1 1364 246 21 11 chr1 112390535 112390908 -130273445 - L1ME3A LINE L1 -1189 5026 4647 1699 241 64 49 chr1 112391508 112392241 -130272112 - L1ME3A LINE L1 -1593 4622 3879 324 0 0 0 chr1 112392313 112392349 -130272004 + (TG)n Simple_repeat Simple_repeat 2 37 0 540 321 96 17 chr1 112392836 112392959 -130271394 + MIR SINE MIR 4 116 -146 279 79 0 0 chr1 112392959 112392997 -130271356 + (ATG)n Simple_repeat Simple_repeat 3 40 0 540 321 96 17 chr1 112392997 112393113 -130271240 + MIR SINE MIR 116 262 0 540 228 16 8 chr1 112393126 112393249 -130271104 + L2 LINE L2 3190 3313 0 429 268 47 0 chr1 112393450 112393577 -130270776 + MER94 DNA DNA 2 134 0 1594 135 35 4 chr1 112394806 112395242 -130269111 + LTR54 LTR ERV1 1 510 0 22 0 0 0 chr1 112395313 112395335 -130269018 + AT_rich Low_complexity Low_complexity 1 22 0 901 133 0 12 chr1 112395893 112396058 -130268295 + (TTTC)n Simple_repeat Simple_repeat 3 165 0 242 179 0 0 chr1 112396058 112396097 -130268256 - Alu SINE Alu -28 138 100 1494 163 19 26 chr1 112396098 112396368 -130267985 - AluSx SINE Alu -44 268 1 29 47 0 0 chr1 112398154 112398197 -130266156 + AT_rich Low_complexity Low_complexity 1 43 0 1912 211 61 79 chr1 112398216 112398851 -130265502 + MLT1E3 LTR MaLR 1 624 0 23 33 0 0 chr1 112399087 112399117 -130265236 + AT_rich Low_complexity Low_complexity 1 30 0 183 308 0 0 chr1 112399150 112399189 -130265164 + MIR SINE MIR 111 149 -59 221 345 9 27 chr1 112400160 112400270 -130264083 - L2 LINE L2 -1178 2136 2029 186 371 19 9 chr1 112400343 112400448 -130263905 - L2 LINE L2 -1429 1885 1780 * 208 354 39 39 chr1 112400427 112400557 -130263796 + L2 LINE L2 3113 3242 -30 28 71 0 0 chr1 112401369 112401425 -130262928 + AT_rich Low_complexity Low_complexity 1 56 0 301 267 83 8 chr1 112401760 112401880 -130262473 - L1ME3A LINE L1 -2821 3394 3266 2270 64 32 6 chr1 112401880 112402193 -130262160 - L1PA7 LINE L1 0 6154 5834 5045 67 8 0 chr1 112402193 112403305 -130261048 + L1PA7 LINE L1 4701 5819 -335 607 235 80 125 chr1 112403301 112403764 -130260589 - L1ME3A LINE L1 -2937 3278 2837 * 684 216 7 14 chr1 112403766 112403905 -130260448 - AluJ SINE Alu -15 297 160 234 299 0 0 chr1 112403915 112403992 -130260361 - L1MEc LINE L1 -3026 3189 3113 1027 166 0 0 chr1 112404007 112404164 -130260189 - AluJ SINE Alu -155 157 1 1008 256 46 91 chr1 112404180 112404309 -130260044 - L1MEc LINE L1 -3379 2836 2703 1796 170 10 0 chr1 112404309 112404615 -130259738 + AluSx SINE Alu 1 309 -3 1008 256 46 91 chr1 112404615 112405436 -130258917 - L1MEc LINE L1 -3512 2703 1974 469 348 48 9 chr1 112405453 112405680 -130258673 - L1MEc LINE L1 -5706 499 264 224 214 0 0 chr1 112406642 112406684 -130257669 + (CA)n Simple_repeat Simple_repeat 1 42 0 361 281 12 0 chr1 112408006 112408088 -130256265 - MIR3 SINE MIR -34 174 92 22 0 0 0 chr1 112408303 112408325 -130256028 + AT_rich Low_complexity Low_complexity 1 22 0 749 314 104 32 chr1 112409276 112409815 -130254538 + L2 LINE L2 2476 3047 -266 386 220 173 27 chr1 112410149 112410299 -130254054 + L2 LINE L2 3142 3313 0 2204 19 0 0 chr1 112410419 112410675 -130253678 + L1PA5 LINE L1 5899 6154 0 687 109 0 31 chr1 112411673 112411801 -130252552 + (TCCCC)n Simple_repeat Simple_repeat 2 125 0 1953 118 30 14 chr1 112411801 112412097 -130252256 - AluSx SINE Alu -11 301 1 766 314 29 0 chr1 112412229 112412474 -130251879 + MIR SINE MIR 9 260 -2 393 276 71 63 chr1 112413053 112413292 -130251061 - MIR SINE MIR -9 253 13 214 276 0 0 chr1 112413969 112414027 -130250326 + MIR SINE MIR 180 237 -25 22 35 0 0 chr1 112414322 112414351 -130250002 + AT_rich Low_complexity Low_complexity 1 29 0 801 245 181 73 chr1 112415590 112416082 -130248271 + MLT1G LTR MaLR 1 584 -6 203 217 43 14 chr1 112416770 112416839 -130247514 + (TTTA)n Simple_repeat Simple_repeat 4 74 0 184 351 147 35 chr1 112417706 112418413 -130245940 + L2 LINE L2 1525 2310 -1004 21 0 0 0 chr1 112420087 112420108 -130244245 + AT_rich Low_complexity Low_complexity 1 21 0 245 298 127 78 chr1 112420414 112420635 -130243718 + L2 LINE L2 1948 2194 -1120 623 48 0 12 chr1 112420635 112420719 -130243634 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 245 298 127 78 chr1 112420719 112420843 -130243510 + L2 LINE L2 2194 2310 -1004 1961 193 8 11 chr1 112420879 112421272 -130243081 + MLT1B LTR MaLR 1 505 0 376 355 207 21 chr1 112421272 112421793 -130242560 + L2 LINE L2 2344 2961 -353 622 283 33 67 chr1 112421834 112422074 -130242279 - MIR SINE MIR 0 262 31 284 315 14 103 chr1 112422193 112422339 -130242014 + L2 LINE L2 3136 3268 -4 1638 178 78 32 chr1 112422499 112422847 -130241506 - THE1B LTR MaLR 0 364 1 318 173 0 0 chr1 112423037 112423112 -130241241 + CT-rich Low_complexity Low_complexity 2 76 0 198 0 0 0 chr1 112424832 112424854 -130239499 + (CA)n Simple_repeat Simple_repeat 2 23 0 1005 199 171 57 chr1 112424980 112425332 -130239021 - MSTD LTR MaLR -2 394 3 201 176 0 0 chr1 112425637 112425671 -130238682 + T-rich Low_complexity Low_complexity 1 34 0 557 282 197 0 chr1 112425734 112425794 -130238559 - MIR SINE MIR 0 262 215 278 26 26 0 chr1 112425794 112425833 -130238520 + (CA)n Simple_repeat Simple_repeat 1 40 0 557 282 197 0 chr1 112425833 112425985 -130238368 - MIR SINE MIR -47 215 8 225 0 0 0 chr1 112426019 112426044 -130238309 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3139 273 58 58 chr1 112426044 112426447 -130237906 - L1MEc LINE L1 -4665 1731 1329 2037 136 0 3 chr1 112426447 112426741 -130237612 + AluSx SINE Alu 1 293 -19 3139 273 58 58 chr1 112426741 112427885 -130236468 - L1MEc LINE L1 -5066 1330 184 248 158 0 146 chr1 112427891 112427973 -130236380 - L1MEc LINE L1 -6282 114 45 29 0 0 0 chr1 112427982 112428011 -130236342 + AT_rich Low_complexity Low_complexity 1 29 0 201 232 196 0 chr1 112428225 112428281 -130236072 + MIR SINE MIR 120 186 -76 306 339 134 6 chr1 112429171 112429342 -130235011 + MER91A DNA MER1_type 4 196 0 423 349 114 29 chr1 112429568 112430253 -130234100 + L2 LINE L2 1988 2730 -584 222 302 158 35 chr1 112430285 112430487 -130233866 - MIR SINE MIR -7 255 29 * 253 312 128 46 chr1 112430473 112430691 -130233662 + MIR SINE MIR 27 262 0 182 400 67 28 chr1 112430729 112430909 -130233444 + L2 LINE L2 3046 3232 -40 1366 270 34 83 chr1 112431849 112432583 -130231770 - L1ME3A LINE L1 -37 6133 5436 604 260 67 18 chr1 112433106 112433344 -130231009 + MLT1J2 LTR MaLR 192 450 0 2295 36 4 4 chr1 112434769 112435046 -130229307 - AluY SINE Alu -1 310 34 373 268 96 48 chr1 112435092 112435342 -130229011 + MLT1J1 LTR MaLR 183 444 -2 849 350 125 31 chr1 112435420 112436313 -130228040 + L3 LINE CR1 569 1545 -32 534 278 65 39 chr1 112437635 112437785 -130226568 - L1MEc LINE L1 -3519 2696 2551 3197 220 12 6 chr1 112437785 112438434 -130225919 + MER82 DNA MER2_type 1 653 0 534 278 65 39 chr1 112438434 112438668 -130225685 - L1MEc LINE L1 -3664 2551 2302 370 215 139 0 chr1 112438701 112438780 -130225573 - U6 snRNA snRNA -17 90 1 488 288 34 6 chr1 112438862 112439039 -130225314 - L1MEc LINE L1 -4102 2294 2113 206 135 19 39 chr1 112439690 112439742 -130224611 + (TTA)n Simple_repeat Simple_repeat 1 51 0 315 221 88 7 chr1 112439742 112439878 -130224475 - L1ME4a LINE L1 -5 6116 5970 620 305 49 0 chr1 112439955 112440158 -130224195 + MIR SINE MIR 50 262 0 357 294 259 12 chr1 112440571 112440741 -130223612 - MIR SINE MIR -49 213 2 22 0 0 0 chr1 112441190 112441212 -130223141 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 112441270 112441299 -130223054 + AT_rich Low_complexity Low_complexity 1 29 0 2038 122 7 3 chr1 112441357 112441652 -130222701 - AluSx SINE Alu -16 296 1 2400 61 0 3 chr1 112442818 112443112 -130221241 + AluY SINE Alu 1 293 -18 373 338 105 52 chr1 112443503 112444026 -130220327 - L2 LINE L2 -459 2855 2305 236 336 101 8 chr1 112444028 112444147 -130220206 - MIR SINE MIR -6 256 127 494 293 22 60 chr1 112444296 112444508 -130219845 + MIR SINE MIR 3 204 -58 256 187 13 13 chr1 112444521 112444596 -130219757 + (TA)n Simple_repeat Simple_repeat 2 76 0 21 36 0 0 chr1 112444879 112444907 -130219446 + AT_rich Low_complexity Low_complexity 1 28 0 544 308 95 53 chr1 112445331 112445730 -130218623 - L2 LINE L2 0 3272 2857 29 70 0 0 chr1 112447568 112447625 -130216728 + AT_rich Low_complexity Low_complexity 1 57 0 1194 174 59 0 chr1 112447986 112448256 -130216097 - L1MA8 LINE L1 -3 6288 6003 30 0 0 0 chr1 112449883 112449913 -130214440 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr1 112450920 112450952 -130213401 + AT_rich Low_complexity Low_complexity 1 32 0 467 179 50 100 chr1 112450999 112451081 -130213272 + MIR SINE MIR 127 201 -61 2287 107 0 0 chr1 112451081 112451381 -130212972 + AluSg SINE Alu 3 302 -8 467 179 50 100 chr1 112451381 112451438 -130212915 + MIR SINE MIR 201 259 -3 189 107 0 0 chr1 112451730 112451758 -130212595 + (T)n Simple_repeat Simple_repeat 1 28 0 481 243 18 0 chr1 112452203 112452314 -130212039 + MER81 DNA DNA 1 113 -1 262 258 118 11 chr1 112452430 112452523 -130211830 + MIR SINE MIR 72 174 -88 339 102 0 0 chr1 112453400 112453449 -130210904 + MADE1 DNA Mariner 31 79 -1 237 303 0 0 chr1 112453527 112453593 -130210760 + L2 LINE L2 2903 2968 -304 188 295 13 39 chr1 112453758 112453836 -130210517 + L2 LINE L2 3234 3309 -4 269 373 9 9 chr1 112453860 112453921 -130210432 + MIR3 SINE MIR 54 117 -91 3886 136 22 6 chr1 112453921 112454562 -130209791 + MER39B LTR ERV1 3 653 0 269 373 9 9 chr1 112454562 112454610 -130209743 + MIR3 SINE MIR 116 163 -45 2329 75 0 3 chr1 112454973 112455266 -130209087 - AluY SINE Alu -19 292 1 1521 280 81 28 chr1 112455463 112456002 -130208351 + MLT1E LTR MaLR 1 593 0 530 355 38 65 chr1 112456024 112456396 -130207957 - L2 LINE L2 0 3272 2911 5437 157 10 41 chr1 112456526 112456627 -130207726 + L1PA16 LINE L1 4774 4877 -1289 191 61 30 0 chr1 112456627 112456660 -130207693 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5437 157 10 41 chr1 112456660 112457984 -130206369 + L1PA16 LINE L1 4877 6166 0 229 313 12 12 chr1 112458000 112458083 -130206270 - L2 LINE L2 -564 2750 2668 727 244 52 16 chr1 112458107 112458388 -130205965 - MLT2E LTR ERVL -24 604 240 281 290 32 32 chr1 112458403 112458527 -130205826 + L2 LINE L2 3105 3228 -85 278 300 184 22 chr1 112459614 112459791 -130204562 + MIR SINE MIR 1 223 -39 333 0 0 0 chr1 112459791 112459828 -130204525 + (TG)n Simple_repeat Simple_repeat 2 38 0 278 300 184 22 chr1 112459828 112459873 -130204480 + MIR SINE MIR 223 259 -3 7203 182 40 16 chr1 112460057 112461143 -130203210 - L1MA9 LINE L1 0 6312 5254 1968 143 10 10 chr1 112461143 112461450 -130202903 - AluSx SINE Alu -5 307 1 7203 182 40 16 chr1 112461450 112462208 -130202145 - L1MA9 LINE L1 -1058 5254 4516 258 32 0 0 chr1 112462208 112462239 -130202114 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2108 121 0 0 chr1 112462238 112462542 -130201811 - AluSg SINE Alu 0 304 1 7203 182 40 16 chr1 112462542 112463173 -130201180 - L1MA9 LINE L1 -2099 4213 3770 222 37 0 0 chr1 112464067 112464094 -130200259 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 912 69 0 23 chr1 112464094 112464225 -130200128 - L1PA13 LINE L1 -11 6152 6025 445 352 56 41 chr1 112464416 112464754 -130199599 + L2 LINE L2 2551 2893 -421 256 208 50 142 chr1 112465028 112465148 -130199205 + L2 LINE L2 3202 3310 -3 180 341 165 0 chr1 112465314 112465405 -130198948 + MIR SINE MIR 52 157 -105 250 307 50 10 chr1 112465532 112465633 -130198720 - MIR SINE MIR 0 262 158 25 31 0 0 chr1 112466086 112466118 -130198235 + AT_rich Low_complexity Low_complexity 1 32 0 313 189 324 9 chr1 112466704 112466815 -130197538 - L2 LINE L2 0 3313 3168 37 23 0 0 chr1 112467298 112467342 -130197011 + AT_rich Low_complexity Low_complexity 1 44 0 2823 196 8 8 chr1 112468010 112468526 -130195827 + Tigger7 DNA MER2_type 1 516 -1971 645 141 0 0 chr1 112468530 112468622 -130195731 + Tigger7 DNA MER2_type 2399 2490 -1 317 284 73 68 chr1 112469377 112469937 -130194416 - L1MEc LINE L1 -4580 1816 1254 328 324 42 35 chr1 112470266 112470553 -130193800 - L1MEc LINE L1 -4794 1516 1228 950 281 27 7 chr1 112470568 112470860 -130193493 - L1ME3A LINE L1 -5 6165 5868 1198 308 97 50 chr1 112470933 112471031 -130193322 - L1MEc LINE L1 -4978 1141 1049 2222 93 0 7 chr1 112471031 112471331 -130193022 - AluY SINE Alu -13 298 1 1198 308 97 50 chr1 112471331 112472303 -130192050 - L1MEc LINE L1 -5070 1049 20 587 243 41 6 chr1 112472382 112472551 -130191802 + MIR SINE MIR 86 260 -2 22 70 0 0 chr1 112472610 112472653 -130191700 + AT_rich Low_complexity Low_complexity 1 43 0 212 331 126 8 chr1 112472714 112472841 -130191512 - L3 LINE CR1 -4 1573 1432 216 351 54 48 chr1 112475056 112475224 -130189129 + MIR SINE MIR 40 208 -54 7754 82 11 5 chr1 112475338 112476408 -130187945 - L1PA7 LINE L1 -1045 5101 4025 6752 67 1 10 chr1 112476408 112477476 -130186877 + L1PA7 LINE L1 5101 6159 0 336 265 143 20 chr1 112477558 112477705 -130186648 - MIR SINE MIR 0 262 98 23 0 0 0 chr1 112477923 112477946 -130186407 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 112478118 112478141 -130186212 + AT_rich Low_complexity Low_complexity 1 23 0 661 353 62 24 chr1 112478144 112478750 -130185603 + L2 LINE L2 2458 3078 -194 247 253 168 0 chr1 112478983 112479078 -130185275 + L2 LINE L2 3203 3313 0 22 0 0 0 chr1 112479201 112479223 -130185130 + AT_rich Low_complexity Low_complexity 1 22 0 1274 45 0 0 chr1 112480660 112480815 -130183538 - L1PA3 LINE L1 -162 5993 5839 1159 63 6 6 chr1 112480815 112480974 -130183379 + L1PA3 LINE L1 5997 6155 0 21 71 0 0 chr1 112480974 112481016 -130183337 + AT_rich Low_complexity Low_complexity 1 42 0 31 26 0 0 chr1 112481221 112481259 -130183094 + AT_rich Low_complexity Low_complexity 1 38 0 921 162 39 0 chr1 112481760 112481914 -130182439 - AluSg/x SINE Alu -17 295 136 27 0 0 0 chr1 112482153 112482180 -130182173 + AT_rich Low_complexity Low_complexity 1 27 0 1977 146 15 54 chr1 112483049 112483439 -130180914 - THE1C LTR MaLR 0 375 1 249 278 134 10 chr1 112483583 112483680 -130180673 - MIR SINE MIR -80 182 74 589 280 68 5 chr1 112484602 112484809 -130179544 - MER58A DNA MER1_type 0 224 5 301 300 87 27 chr1 112484855 112485005 -130179348 - MIR3 SINE MIR -7 201 43 266 241 0 13 chr1 112485731 112485810 -130178543 - MIR SINE MIR 0 262 185 216 305 126 42 chr1 112485996 112486091 -130178262 - L2 LINE L2 -32 3240 3138 223 290 109 36 chr1 112486469 112486607 -130177746 - L2 LINE L2 -1341 1973 1826 1056 303 143 21 chr1 112487662 112488186 -130176167 + MLT1K LTR MaLR 1 588 0 22 0 0 0 chr1 112488242 112488264 -130176089 + AT_rich Low_complexity Low_complexity 1 22 0 7110 132 11 5 chr1 112488269 112490408 -130173945 - L1MA1 LINE L1 -4 6298 4145 844 255 92 17 chr1 112492094 112492333 -130172020 + MIR SINE MIR 6 262 0 856 225 14 23 chr1 112492871 112493089 -130171264 - MER20 DNA MER1_type 0 219 4 321 376 10 36 chr1 112493095 112493289 -130171064 - MIR SINE MIR -70 192 4 578 252 75 7 chr1 112494416 112494563 -130169790 - MER5A DNA MER1_type -29 160 4 181 313 133 31 chr1 112495368 112495496 -130168857 - L2 LINE L2 -24 3289 3149 4178 79 0 0 chr1 112495693 112496236 -130168117 + L1PA8A LINE L1 5561 6103 -28 22 56 0 0 chr1 112496256 112496292 -130168061 + AT_rich Low_complexity Low_complexity 1 36 0 248 33 0 0 chr1 112497229 112497259 -130167094 + LTR6A LTR ERV1 73 102 -462 23 68 0 0 chr1 112497681 112497725 -130166628 + AT_rich Low_complexity Low_complexity 1 44 0 1319 225 54 47 chr1 112498080 112498467 -130165886 + MLT1B LTR MaLR 1 390 0 432 331 22 16 chr1 112499219 112499399 -130164954 + MIR SINE MIR 44 224 -38 233 0 62 0 chr1 112499786 112499818 -130164535 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 831 285 178 20 chr1 112499911 112500304 -130164049 - L2 LINE L2 -2510 804 350 261 272 8 96 chr1 112500310 112500435 -130163918 + MER5B DNA MER1_type 2 115 -63 6150 186 33 6 chr1 112500436 112501911 -130162442 + L1MC1 LINE L1 4806 6333 0 392 280 30 0 chr1 112501974 112502074 -130162279 - L2 LINE L2 -2947 367 265 410 286 8 0 chr1 112502981 112503100 -130161253 - L1ME LINE L1 -603 5561 5442 834 171 41 7 chr1 112503134 112503280 -130161073 - FRAM SINE Alu -22 154 4 1039 184 25 106 chr1 112503374 112503567 -130160786 - LTR36 LTR ERV1 0 611 453 1871 163 0 10 chr1 112503567 112503874 -130160479 + AluJb SINE Alu 1 304 -8 1039 184 25 106 chr1 112503874 112504001 -130160352 - LTR36 LTR ERV1 -158 453 317 213 315 0 0 chr1 112506010 112506064 -130158289 + G-rich Low_complexity Low_complexity 3 56 0 355 301 35 9 chr1 112507572 112507685 -130156668 - L2 LINE L2 0 3313 3198 191 273 0 0 chr1 112510178 112510233 -130154120 - MIR3 SINE MIR 0 208 154 180 0 0 0 chr1 112510282 112510302 -130154051 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr1 112512054 112512082 -130152271 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr1 112512788 112512812 -130151541 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 313 294 51 78 chr1 112512947 112513202 -130151151 + L2 LINE L2 3032 3279 -34 27 0 0 0 chr1 112513678 112513705 -130150648 + AT_rich Low_complexity Low_complexity 1 27 0 800 150 0 0 chr1 112514576 112514703 -130149650 - MLT1A1 LTR MaLR -47 318 192 21 57 0 0 chr1 112515027 112515062 -130149291 + AT_rich Low_complexity Low_complexity 1 35 0 227 135 0 27 chr1 112515787 112515824 -130148529 + U6 snRNA snRNA 1 36 -71 22 80 0 0 chr1 112516429 112516479 -130147874 + AT_rich Low_complexity Low_complexity 1 50 0 365 64 71 34 chr1 112520774 112520886 -130143467 - L1PA16 LINE L1 -1 6162 6025 1187 261 209 27 chr1 112522621 112523367 -130140986 + HAL1 LINE L1 1047 1928 -579 228 250 26 0 chr1 112523506 112523582 -130140771 + HAL1 LINE L1 2075 2152 -355 352 188 113 53 chr1 112523915 112524130 -130140223 + HAL1b LINE L1 828 2448 -59 28 71 0 0 chr1 112524467 112524523 -130139830 + AT_rich Low_complexity Low_complexity 1 56 0 25 75 0 0 chr1 112524701 112524754 -130139599 + AT_rich Low_complexity Low_complexity 1 53 0 7285 35 5 0 chr1 112524991 112526005 -130138348 + L1PA5 LINE L1 5125 6141 -13 22 0 0 0 chr1 112526005 112526027 -130138326 + AT_rich Low_complexity Low_complexity 1 22 0 403 247 32 0 chr1 112526638 112526731 -130137622 - L2 LINE L2 0 3272 3177 445 282 77 73 chr1 112527958 112528231 -130136122 - L2 LINE L2 -44 3269 2996 671 272 109 17 chr1 112528306 112528545 -130135808 + MIR SINE MIR 2 262 0 1406 336 125 53 chr1 112528553 112528872 -130135481 - L2 LINE L2 -372 2942 2647 2116 78 0 4 chr1 112528872 112529140 -130135213 + AluY SINE Alu 38 304 -7 1406 336 125 53 chr1 112529140 112530056 -130134297 - L2 LINE L2 -667 2647 1618 329 345 28 0 chr1 112530231 112530354 -130133999 + MIR SINE MIR 22 144 -64 26 30 0 0 chr1 112531536 112531569 -130132784 + AT_rich Low_complexity Low_complexity 1 33 0 357 354 114 32 chr1 112532829 112533354 -130130999 - L2 LINE L2 -337 2977 2410 253 282 146 18 chr1 112533486 112533596 -130130757 + MIR SINE MIR 88 211 -51 377 322 33 38 chr1 112533600 112533783 -130130570 + L2 LINE L2 3127 3308 -5 219 158 35 18 chr1 112534989 112535046 -130129307 + (TA)n Simple_repeat Simple_repeat 1 58 0 608 328 65 78 chr1 112536754 112537398 -130126955 - L2 LINE L2 -4 3268 2638 198 0 0 0 chr1 112537775 112537797 -130126556 + (TG)n Simple_repeat Simple_repeat 1 22 0 369 0 0 0 chr1 112538314 112538355 -130125998 + (CAA)n Simple_repeat Simple_repeat 2 42 0 423 0 0 0 chr1 112539800 112539847 -130124506 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr1 112539982 112540011 -130124342 + AT_rich Low_complexity Low_complexity 1 29 0 1525 67 0 20 chr1 112540990 112541185 -130123168 - AluY SINE Alu -16 295 105 764 305 15 48 chr1 112541386 112541498 -130122855 + MIR SINE MIR 2 116 -146 1574 115 43 146 chr1 112541498 112541916 -130122437 + THE1C LTR MaLR 1 375 0 764 305 15 48 chr1 112541916 112542072 -130122281 + MIR SINE MIR 116 261 -1 181 302 0 0 chr1 112542803 112542846 -130121507 + MIR SINE MIR 215 257 -5 296 327 98 49 chr1 112542907 112543213 -130121140 + L2 LINE L2 880 1200 -2114 2410 52 3 16 chr1 112543500 112543808 -130120545 - AluY SINE Alu -7 304 1 24 0 0 0 chr1 112544065 112544089 -130120264 + AT_rich Low_complexity Low_complexity 1 24 0 415 293 167 20 chr1 112545345 112545495 -130118858 + MER5A DNA MER1_type 18 189 0 1817 145 51 0 chr1 112545583 112545859 -130118494 - AluSx SINE Alu -22 290 1 392 330 28 0 chr1 112546260 112546369 -130117984 + L2 LINE L2 3156 3267 -5 21 36 0 0 chr1 112546508 112546536 -130117817 + AT_rich Low_complexity Low_complexity 1 28 0 359 305 14 7 chr1 112547429 112547570 -130116783 + MER103 DNA DNA 11 152 -14 21 57 0 0 chr1 112547749 112547784 -130116569 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr1 112548940 112548977 -130115376 + AT_rich Low_complexity Low_complexity 1 37 0 1842 132 4 4 chr1 112549012 112549285 -130115068 - AluSx SINE Alu -39 273 1 25 31 0 0 chr1 112551076 112551108 -130113245 + AT_rich Low_complexity Low_complexity 1 32 0 598 154 64 0 chr1 112551680 112551790 -130112563 - AluJo/FRAM SINE Alu -16 296 180 1589 153 0 0 chr1 112551793 112552029 -130112324 - AluSx SINE Alu -76 236 1 685 163 8 0 chr1 112552327 112552450 -130111903 - AluSq/x SINE Alu -189 124 1 24 0 0 0 chr1 112553255 112553279 -130111074 + AT_rich Low_complexity Low_complexity 1 24 0 386 321 15 0 chr1 112553927 112554061 -130110292 - MIR SINE MIR -52 210 75 1454 201 0 0 chr1 112554144 112554403 -130109950 - AluSx SINE Alu -15 297 39 187 307 43 79 chr1 112554969 112555109 -130109244 - MIR3 SINE MIR -68 140 6 231 256 0 11 chr1 112555852 112555926 -130108427 + (TAA)n Simple_repeat Simple_repeat 2 76 -14 1436 150 27 65 chr1 112555926 112556219 -130108134 + AluJb SINE Alu 5 286 -26 231 256 0 11 chr1 112556219 112556234 -130108119 + (TAA)n Simple_repeat Simple_repeat 76 90 0 384 316 163 30 chr1 112556269 112556570 -130107783 - L3 LINE CR1 -5 1572 1232 271 364 45 8 chr1 112558136 112558268 -130106085 + MIR3 SINE MIR 24 160 -48 193 89 44 0 chr1 112558819 112558864 -130105489 + (TTA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr1 112560212 112560234 -130104119 + AT_rich Low_complexity Low_complexity 1 22 0 591 286 50 6 chr1 112561508 112561690 -130102663 + MIR3 SINE MIR 9 198 -10 206 338 84 78 chr1 112563089 112563397 -130100956 - L2 LINE L2 -463 2851 2542 27 29 0 0 chr1 112564465 112564499 -130099854 + AT_rich Low_complexity Low_complexity 1 34 0 324 330 64 17 chr1 112564893 112565066 -130099287 + MIR SINE MIR 59 239 -23 683 278 23 0 chr1 112565332 112565507 -130098846 + L2 LINE L2 1387 1565 -1749 209 306 116 41 chr1 112565507 112565654 -130098699 + MER5B DNA MER1_type 1 158 -20 * 587 258 66 0 chr1 112565524 112565675 -130098678 - MER5A DNA MER1_type -20 169 9 * 2713 275 130 49 chr1 112565634 112567299 -130097054 + L2 LINE L2 1510 3313 0 272 147 15 73 chr1 112567750 112567818 -130096535 + L1MA9 LINE L1 6205 6274 -23 196 333 21 32 chr1 112568296 112568389 -130095964 + MIR3 SINE MIR 89 180 -28 451 290 102 5 chr1 112568452 112568638 -130095715 + MIR SINE MIR 59 262 0 868 253 22 13 chr1 112568884 112569109 -130095244 - MIR SINE MIR -35 227 1 248 270 68 37 chr1 112570174 112570337 -130094016 + L1ME4a LINE L1 5951 6118 -3 184 262 0 0 chr1 112570393 112570435 -130093918 - L2 LINE L2 -15 3257 3216 416 331 0 7 chr1 112571259 112571395 -130092958 + CT-rich Low_complexity Low_complexity 1 135 0 216 345 55 0 chr1 112571437 112571492 -130092861 - MER5B DNA MER1_type -99 79 22 290 266 122 22 chr1 112571987 112572126 -130092227 - L2 LINE L2 0 3313 3161 2276 123 126 5 chr1 112572188 112572570 -130091783 + MSTA LTR MaLR 1 428 0 1255 161 83 0 chr1 112573187 112573404 -130090949 - MER46A DNA MER2_type 0 236 2 233 306 0 0 chr1 112573437 112573499 -130090854 - MER5A DNA MER1_type 0 189 128 435 178 0 0 chr1 112573522 112573595 -130090758 + U6 snRNA snRNA 1 73 -34 275 338 0 0 chr1 112573599 112573679 -130090674 - MER5A DNA MER1_type -101 88 9 2068 121 0 0 chr1 112574742 112575031 -130089322 - AluSx SINE Alu -21 291 3 494 262 43 7 chr1 112575360 112575501 -130088852 + MIR SINE MIR 9 154 -108 2199 215 35 5 chr1 112575513 112575996 -130088357 - LTR65 LTR ERV1 -7 644 165 206 333 43 0 chr1 112576039 112576108 -130088245 + MIR SINE MIR 161 232 -30 326 278 62 42 chr1 112576311 112576455 -130087898 - MER5B DNA MER1_type -30 148 2 451 343 134 28 chr1 112576546 112576665 -130087688 - L3 LINE CR1 -36 1541 1436 1350 150 118 57 chr1 112576665 112576945 -130087408 - AluSx SINE Alu -15 297 1 451 343 134 28 chr1 112576945 112577221 -130087132 - L3 LINE CR1 -141 1436 1104 22 0 0 0 chr1 112577351 112577373 -130086980 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 112579855 112579879 -130084474 + AT_rich Low_complexity Low_complexity 1 24 0 469 336 7 72 chr1 112581269 112581455 -130082898 + MIR SINE MIR 2 199 -63 2309 108 30 16 chr1 112581455 112581825 -130082528 + THE1C LTR MaLR 1 375 0 8929 138 72 5 chr1 112581826 112583306 -130081047 + THE1C-int LTR MaLR 2 1580 0 2225 137 42 0 chr1 112583307 112583666 -130080687 + THE1C LTR MaLR 2 375 0 469 336 7 72 chr1 112583666 112583752 -130080601 + MIR SINE MIR 198 260 -2 189 107 0 0 chr1 112584620 112584648 -130079705 + (A)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chr1 112585400 112585431 -130078922 + AT_rich Low_complexity Low_complexity 1 31 0 438 291 137 26 chr1 112587332 112587566 -130076787 + MIR SINE MIR 3 262 0 27 29 0 0 chr1 112587576 112587610 -130076743 + AT_rich Low_complexity Low_complexity 1 34 0 218 95 24 0 chr1 112588142 112588184 -130076169 + (TAA)n Simple_repeat Simple_repeat 3 45 0 412 328 31 46 chr1 112588188 112588383 -130075970 - MIR SINE MIR -3 259 68 1341 140 40 113 chr1 112588904 112589232 -130075121 + L1MC2 LINE L1 6032 6335 -9 23 0 0 0 chr1 112590385 112590408 -130073945 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr1 112591472 112591517 -130072836 + AT_rich Low_complexity Low_complexity 1 45 0 280 73 98 0 chr1 112593868 112593909 -130070444 - AluSg/x SINE Alu -189 111 67 252 59 0 0 chr1 112595762 112595796 -130068557 + (CA)n Simple_repeat Simple_repeat 2 35 0 266 0 29 0 chr1 112595988 112596022 -130068331 + (TA)n Simple_repeat Simple_repeat 2 36 0 293 167 22 22 chr1 112596953 112597043 -130067310 + (TA)n Simple_repeat Simple_repeat 1 90 0 9704 129 66 52 chr1 112597875 112599635 -130064718 + Tigger2 DNA MER2_type 930 2713 -5 333 285 173 33 chr1 112600253 112600467 -130063886 + MLT1H1 LTR MaLR 312 555 0 23 33 0 0 chr1 112600751 112600781 -130063572 + AT_rich Low_complexity Low_complexity 1 30 0 378 278 64 60 chr1 112601553 112601739 -130062614 + L1ME4a LINE L1 5730 5919 -202 7162 55 0 1 chr1 112601739 112603331 -130061022 + L1PA5 LINE L1 4559 6149 -5 378 278 64 60 chr1 112603331 112603378 -130060975 + L1ME4a LINE L1 5919 5964 -157 21 0 0 0 chr1 112603495 112603516 -130060837 + AT_rich Low_complexity Low_complexity 1 21 0 361 307 37 8 chr1 112603538 112603779 -130060574 + L1ME4a LINE L1 5609 5856 -265 222 37 0 0 chr1 112604026 112604053 -130060300 + (CA)n Simple_repeat Simple_repeat 2 28 0 249 250 14 0 chr1 112605536 112605608 -130058745 - MER116 DNA Mariner -7 73 1 211 328 0 0 chr1 112606225 112606283 -130058070 + CT-rich Low_complexity Low_complexity 4 61 0 339 44 0 0 chr1 112609084 112609129 -130055224 + (CA)n Simple_repeat Simple_repeat 2 46 0 235 291 91 9 chr1 112609338 112609448 -130054905 - MER112 DNA MER1_type -6 254 136 324 0 0 0 chr1 112609642 112609678 -130054675 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1893 37 44 67 chr1 112610160 112610430 -130053923 - AluY SINE Alu -6 305 42 401 246 27 27 chr1 112611921 112612031 -130052322 - MIR SINE MIR -96 166 57 2094 149 0 0 chr1 112612238 112612546 -130051807 + AluSx SINE Alu 1 308 -4 1447 276 44 55 chr1 112612656 112613222 -130051131 - MLT1E LTR MaLR 0 593 34 36 70 0 0 chr1 112613441 112613512 -130050841 + AT_rich Low_complexity Low_complexity 1 71 0 490 297 41 41 chr1 112613734 112613929 -130050424 + L2 LINE L2 3103 3297 -16 185 359 0 0 chr1 112614016 112614069 -130050284 - L2 LINE L2 -205 3067 3015 273 349 138 39 chr1 112615226 112616196 -130048157 - L2 LINE L2 -640 2674 1609 727 289 62 8 chr1 112616365 112616607 -130047746 - MIR SINE MIR 0 262 8 297 304 27 11 chr1 112620096 112620199 -130044154 - MIR3 SINE MIR -36 172 65 191 176 39 0 chr1 112620527 112620578 -130043775 + (CATA)n Simple_repeat Simple_repeat 4 56 0 266 260 27 0 chr1 112621817 112621890 -130042463 - MIR SINE MIR -96 166 92 343 244 13 0 chr1 112622138 112622216 -130042137 + MER20B DNA MER1_type 3 81 -702 1135 225 181 39 chr1 112622246 112622677 -130041676 + MLT1D LTR MaLR 5 496 -9 1183 277 77 30 chr1 112622937 112623446 -130040907 + MER20B DNA MER1_type 162 694 -89 256 200 17 17 chr1 112623694 112623754 -130040599 + CT-rich Low_complexity Low_complexity 1 60 0 2515 48 0 10 chr1 112623858 112624170 -130040183 + AluY SINE Alu 3 311 0 383 323 39 8 chr1 112626101 112626231 -130038122 - MIR SINE MIR -77 185 52 21 0 0 0 chr1 112628948 112628969 -130035384 + AT_rich Low_complexity Low_complexity 1 21 0 386 239 36 58 chr1 112629586 112629724 -130034629 - MIR SINE MIR -46 216 82 26 0 0 0 chr1 112630073 112630099 -130034254 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr1 112630200 112630227 -130034126 + AT_rich Low_complexity Low_complexity 1 27 0 1906 157 0 0 chr1 112631102 112631388 -130032965 - AluSx SINE Alu -26 286 1 228 307 69 30 chr1 112631777 112631878 -130032475 - L2 LINE L2 -8 3264 3160 2247 188 31 43 chr1 112631928 112632439 -130031914 - MLT1D LTR MaLR 0 505 1 24 0 0 0 chr1 112632857 112632881 -130031472 + AT_rich Low_complexity Low_complexity 1 24 0 3031 305 51 24 chr1 112632888 112634012 -130030341 + L2 LINE L2 1692 2845 -469 315 272 110 59 chr1 112634019 112634155 -130030198 + L2 LINE L2 3129 3271 -1 297 0 0 0 chr1 112634872 112634905 -130029448 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 233 0 0 chr1 112635403 112635446 -130028907 - MIR SINE MIR -126 136 94 2141 109 0 3 chr1 112635447 112635740 -130028613 + AluSx SINE Alu 1 292 -20 623 286 106 0 chr1 112635777 112635994 -130028359 + MIR SINE MIR 21 260 -2 194 269 19 19 chr1 112636003 112636055 -130028298 - MIR SINE MIR -134 74 23 396 311 131 14 chr1 112636532 112636754 -130027599 - MIR SINE MIR 0 262 15 210 91 0 0 chr1 112639137 112639170 -130025183 + (TG)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr1 112639174 112639204 -130025149 + AT_rich Low_complexity Low_complexity 1 30 0 1555 178 0 38 chr1 112639209 112639501 -130024852 - AluJo SINE Alu -31 281 1 308 395 37 0 chr1 112639502 112639636 -130024717 + L2 LINE L2 3134 3272 0 196 410 10 0 chr1 112640118 112640218 -130024135 + MIR3 SINE MIR 3 103 -105 63 62 0 0 chr1 112641362 112641474 -130022879 + AT_rich Low_complexity Low_complexity 1 112 0 429 264 104 0 chr1 112641669 112641775 -130022578 + L2 LINE L2 3156 3272 0 319 332 127 24 chr1 112642372 112642577 -130021776 - MIR SINE MIR -6 256 31 28 48 0 0 chr1 112643374 112643416 -130020937 + AT_rich Low_complexity Low_complexity 1 42 0 27 73 0 0 chr1 112643561 112643616 -130020737 + AT_rich Low_complexity Low_complexity 1 55 0 297 284 34 19 chr1 112644402 112644519 -130019834 - MIR SINE MIR -68 140 43 394 318 30 0 chr1 112645841 112645973 -130018380 - MER5A DNA MER1_type 0 189 54 1146 239 0 0 chr1 112646000 112646222 -130018131 + L1PA13 LINE L1 2 223 -6564 * 14911 238 21 17 chr1 112646220 112646289 -130018064 + L1PA13 LINE L1 1534 1601 -5196 243 88 0 0 chr1 112646289 112646323 -130018030 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 14911 238 21 17 chr1 112646323 112646593 -130017760 + L1PA13 LINE L1 1601 1868 -4929 2490 71 3 0 chr1 112646593 112646901 -130017452 + AluY SINE Alu 1 309 -2 14911 238 21 17 chr1 112646901 112650849 -130013504 + L1PA13 LINE L1 1868 5848 -949 885 315 54 33 chr1 112650852 112651059 -130013294 + L2 LINE L2 2776 2977 -336 1962 127 78 26 chr1 112651059 112651405 -130012948 + THE1B LTR MaLR 1 364 0 885 315 54 33 chr1 112651405 112651714 -130012639 + L2 LINE L2 2977 3307 -6 190 267 208 10 chr1 112653038 112653139 -130011214 - L2 LINE L2 -5 3267 3147 432 241 132 42 chr1 112653217 112653429 -130010924 + L3 LINE CR1 1198 1428 -149 507 69 54 23 chr1 112654110 112654240 -130010113 + (TCTA)n Simple_repeat Simple_repeat 1 134 0 372 220 0 0 chr1 112654352 112654470 -130009883 + (TA)n Simple_repeat Simple_repeat 1 118 0 253 286 57 19 chr1 112655613 112655718 -130008635 - MIR SINE MIR -65 197 89 1090 269 23 47 chr1 112656723 112657131 -130007222 + MLT2C1 LTR ERVL 2 663 0 267 183 21 11 chr1 112657684 112657777 -130006576 + (TA)n Simple_repeat Simple_repeat 1 94 0 2160 102 3 3 chr1 112658270 112658565 -130005788 + AluSx SINE Alu 2 296 -16 1975 206 57 50 chr1 112658607 112659304 -130005049 + L1ME1 LINE L1 5385 6118 -48 22 35 0 0 chr1 112659307 112659336 -130005017 + AT_rich Low_complexity Low_complexity 1 29 0 743 197 0 0 chr1 112659338 112659465 -130004888 + FLAM_C SINE Alu 2 128 -5 22 88 0 0 chr1 112659531 112659588 -130004765 + AT_rich Low_complexity Low_complexity 1 57 0 519 219 9 0 chr1 112661160 112661265 -130003088 + FLAM_A SINE Alu 2 107 -35 451 330 53 16 chr1 112661405 112661593 -130002760 + MIR SINE MIR 51 245 -17 189 0 0 0 chr1 112662124 112662145 -130002208 + (GA)n Simple_repeat Simple_repeat 1 21 0 233 181 60 0 chr1 112662501 112662584 -130001769 + (TA)n Simple_repeat Simple_repeat 1 88 0 706 298 30 38 chr1 112662824 112663089 -130001264 + L2 LINE L2 1984 2246 -1068 293 276 212 20 chr1 112663111 112663314 -130001039 + L2 LINE L2 2503 2744 -570 2436 50 0 7 chr1 112663320 112663620 -130000733 + AluY SINE Alu 1 298 -13 809 60 0 0 chr1 112663626 112663726 -130000627 + AluY SINE Alu 209 308 -3 666 312 135 43 chr1 112663727 112664107 -130000246 + L2 LINE L2 2741 3179 -134 2508 39 0 19 chr1 112664107 112664415 -129999938 - AluY SINE Alu -9 302 1 666 312 135 43 chr1 112664415 112664564 -129999789 + L2 LINE L2 3179 3313 0 342 320 107 11 chr1 112664568 112664746 -129999607 + MIR SINE MIR 56 250 -12 23 68 0 0 chr1 112665610 112665654 -129998699 + AT_rich Low_complexity Low_complexity 1 44 0 192 158 0 0 chr1 112666391 112666429 -129997924 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 409 230 0 0 chr1 112666558 112666657 -129997696 + MER33 DNA MER1_type 1 88 -97 833 181 74 9 chr1 112666707 112666923 -129997430 + MER33 DNA MER1_type 91 320 -4 1160 212 14 0 chr1 112666942 112667154 -129997199 + MER58A DNA MER1_type 9 223 -1 439 311 139 68 chr1 112669140 112669710 -129994643 + L2 LINE L2 1919 2528 -786 25 0 0 0 chr1 112669758 112669783 -129994570 + AT_rich Low_complexity Low_complexity 1 25 0 1257 123 170 36 chr1 112672315 112672371 -129991982 - L1MA7 LINE L1 -1 6290 6243 207 0 0 0 chr1 112672371 112672394 -129991959 + (TA)n Simple_repeat Simple_repeat 2 24 0 1257 123 170 36 chr1 112672394 112672613 -129991740 - L1MA7 LINE L1 -48 6243 5978 201 268 159 36 chr1 112672990 112673128 -129991225 - MIR SINE MIR -1 261 107 291 344 153 0 chr1 112674302 112674433 -129989920 - L3 LINE CR1 -17 1560 1410 28 29 0 0 chr1 112674997 112675032 -129989321 + AT_rich Low_complexity Low_complexity 1 35 0 250 242 121 57 chr1 112677441 112677565 -129986788 + L2 LINE L2 3181 3312 -1 461 281 169 11 chr1 112679327 112679505 -129984848 + LTR33 LTR ERVL 9 214 -307 26 30 0 0 chr1 112679680 112679713 -129984640 + AT_rich Low_complexity Low_complexity 1 33 0 1143 198 134 0 chr1 112679722 112679853 -129984500 - AluJb SINE Alu -15 287 175 306 0 0 0 chr1 112679853 112679887 -129984466 + (TG)n Simple_repeat Simple_repeat 1 34 0 1143 198 134 0 chr1 112679887 112680008 -129984345 - AluJb SINE Alu -127 175 1 236 306 118 0 chr1 112680008 112680093 -129984260 + LTR33 LTR ERVL 425 519 -2 183 323 108 42 chr1 112680532 112680792 -129983561 + L2 LINE L2 2045 2321 -993 391 295 208 14 chr1 112680945 112681152 -129983201 - MLT1J LTR MaLR -39 472 226 1785 139 3 66 chr1 112682684 112683001 -129981352 - AluJb SINE Alu -13 299 3 2171 110 0 3 chr1 112683555 112683847 -129980506 - AluSx SINE Alu -16 296 6 384 225 80 58 chr1 112684071 112684209 -129980144 - L2 LINE L2 -4 3309 3169 242 230 35 11 chr1 112685433 112685520 -129978833 + (TA)n Simple_repeat Simple_repeat 2 90 0 259 359 70 19 chr1 112686036 112686192 -129978161 - MIR3 SINE MIR -14 194 31 2251 216 32 12 chr1 112686608 112687113 -129977240 - MLT2B2 LTR ERVL 0 515 1 214 167 0 77 chr1 112689407 112689485 -129974868 + GA-rich Low_complexity Low_complexity 1 72 0 339 330 88 11 chr1 112690105 112690287 -129974066 - MIR SINE MIR -64 198 3 190 254 0 85 chr1 112691050 112691109 -129973244 - MIR3 SINE MIR -18 190 137 268 301 90 19 chr1 112691612 112691768 -129972585 - MIR SINE MIR -14 248 82 27 62 0 0 chr1 112691916 112691964 -129972389 + AT_rich Low_complexity Low_complexity 1 48 0 1536 133 27 44 chr1 112692846 112693140 -129971213 + THE1C LTR MaLR 2 290 -85 4840 105 11 7 chr1 112693141 112693844 -129970509 + THE1C-int LTR MaLR 875 1580 0 1866 175 16 21 chr1 112693844 112694221 -129970132 + THE1C LTR MaLR 1 375 0 708 281 68 25 chr1 112694479 112694714 -129969639 + L2 LINE L2 274 518 -2796 572 248 40 43 chr1 112694724 112695048 -129969305 + L2 LINE L2 1364 1785 -1529 920 203 122 20 chr1 112695051 112695297 -129969056 + L2 LINE L2 2191 2461 -853 231 170 0 0 chr1 112695426 112695473 -129968880 + GA-rich Low_complexity Low_complexity 2 48 0 23 68 0 0 chr1 112695676 112695720 -129968633 + AT_rich Low_complexity Low_complexity 1 44 0 1296 243 120 25 chr1 112696003 112696436 -129967917 + MLT2B1 LTR ERVL 1 474 -46 181 338 73 52 chr1 112696864 112697136 -129967217 + L2 LINE L2 3033 3310 -3 1636 141 38 31 chr1 112697515 112697805 -129966548 + AluSx SINE Alu 12 303 -9 22 0 0 0 chr1 112697860 112697882 -129966471 + AT_rich Low_complexity Low_complexity 1 22 0 1894 100 4 11 chr1 112697965 112698236 -129966117 - AluSx SINE Alu -43 269 1 2221 208 39 10 chr1 112698420 112698911 -129965442 - MLT1D LTR MaLR 0 505 1 289 423 7 0 chr1 112698984 112699121 -129965232 + L3 LINE CR1 1360 1497 -80 2574 24 3 0 chr1 112699502 112699800 -129964553 - AluY SINE Alu -12 299 1 381 362 7 7 chr1 112699870 112700011 -129964342 - MIR3 SINE MIR -51 157 17 24 32 0 0 chr1 112701506 112701537 -129962816 + AT_rich Low_complexity Low_complexity 1 31 0 254 324 49 54 chr1 112702188 112702392 -129961961 - L2 LINE L2 0 3313 3111 313 339 8 23 chr1 112702608 112702738 -129961615 - L2 LINE L2 -213 3059 2932 2423 61 3 10 chr1 112704240 112704553 -129959800 + AluY SINE Alu 1 311 0 225 0 0 0 chr1 112704553 112704578 -129959775 + (TA)n Simple_repeat Simple_repeat 1 25 0 27 92 0 0 chr1 112707729 112707805 -129956548 + AT_rich Low_complexity Low_complexity 1 76 0 44 0 0 0 chr1 112708120 112708164 -129956189 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 112708881 112708902 -129955451 + AT_rich Low_complexity Low_complexity 1 21 0 270 193 0 0 chr1 112710466 112710523 -129953830 + (CAG)n Simple_repeat Simple_repeat 2 58 0 14339 162 42 13 chr1 112713662 112716305 -129948048 - Tigger2 DNA MER2_type 0 2718 1 433 277 95 0 chr1 112716698 112716846 -129947507 + L2 LINE L2 3152 3313 0 297 349 57 87 chr1 112716924 112717431 -129946922 + L2 LINE L2 2365 2856 -458 507 299 166 53 chr1 112717721 112718095 -129946258 - MLT1G1 LTR MaLR 0 595 180 1772 146 9 50 chr1 112718119 112718440 -129945913 + AluJb SINE Alu 1 308 -4 243 161 0 0 chr1 112718772 112718828 -129945525 + (TA)n Simple_repeat Simple_repeat 2 57 0 295 324 18 9 chr1 112718855 112718966 -129945387 + L1ME LINE L1 864 975 -5956 501 279 7 7 chr1 112719382 112719518 -129944835 + MER106B DNA MER1_type 10 145 -914 3437 129 25 7 chr1 112719962 112720551 -129943802 - L1MA2 LINE L1 0 6304 5705 833 170 17 8 chr1 112720551 112720727 -129943626 + L1MA2 LINE L1 5502 5683 -491 883 250 59 18 chr1 112721025 112721297 -129943056 - LTR37A LTR ERV1 -27 399 117 22 35 0 0 chr1 112721538 112721567 -129942786 + AT_rich Low_complexity Low_complexity 1 29 0 4291 192 52 5 chr1 112721922 112722936 -129941417 + L1MB4 LINE L1 5107 6174 -6 2623 191 105 15 chr1 112723971 112724580 -129939773 - MER39 LTR ERV1 -2 705 1 272 333 83 7 chr1 112724813 112724957 -129939396 + L3 LINE CR1 234 388 -1189 232 384 99 19 chr1 112725501 112725764 -129938589 + L2 LINE L2 2693 2976 -338 2421 74 0 0 chr1 112725960 112726259 -129938094 - AluY SINE Alu -12 299 1 286 333 22 52 chr1 112726263 112726398 -129937955 - MIR SINE MIR -100 162 32 1960 121 33 36 chr1 112726999 112727306 -129937047 + THE1B LTR MaLR 59 364 0 10671 116 5 14 chr1 112727306 112728899 -129935454 + THE1B-int LTR MaLR 1 1578 -2 2390 116 28 19 chr1 112728901 112729262 -129935091 + THE1B LTR MaLR 1 364 0 1601 171 48 17 chr1 112729401 112729693 -129934660 + AluJb SINE Alu 3 303 -9 228 330 51 0 chr1 112730266 112730384 -129933969 + L1ME LINE L1 1226 1349 -5074 411 270 56 76 chr1 112730674 112731291 -129933062 + L1ME LINE L1 1539 2146 -4795 317 163 0 0 chr1 112731408 112731461 -129932892 + Alu SINE Alu 2 44 -257 1013 132 11 39 chr1 112731471 112731653 -129932700 + AluSg/x SINE Alu 136 312 0 804 285 106 49 chr1 112731657 112732351 -129932002 + L1ME LINE L1 3053 3706 -3235 720 78 0 0 chr1 112732351 112732454 -129931899 + L1PB1 LINE L1 6048 6150 -1 5149 34 3 2 chr1 112732456 112733074 -129931279 + L1PA4 LINE L1 5534 6152 -3 804 285 106 49 chr1 112733074 112733236 -129931117 + L1ME LINE L1 3706 3961 -2980 1182 332 170 36 chr1 112783383 112784722 -129879631 - L2 LINE L2 -5 3308 1778 27 29 0 0 chr1 112785863 112785897 -129878456 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr1 112785921 112785949 -129878404 + AT_rich Low_complexity Low_complexity 1 28 0 1454 179 18 4 chr1 112786180 112786459 -129877894 + L1PA3 LINE L1 2770 3052 -3094 1081 136 0 0 chr1 112786463 112786618 -129877735 + AluSq SINE Alu 6 160 -153 11548 116 10 62 chr1 112786726 112789886 -129874467 + L1PA3 LINE L1 3020 6004 -151 1032 47 0 0 chr1 112789986 112790113 -129874240 + L1PA3 LINE L1 6013 6139 -16 5759 116 30 8 chr1 112790130 112791473 -129872880 + L1PA10 LINE L1 4799 6176 0 291 321 12 12 chr1 112791476 112791557 -129872796 - MIR SINE MIR -162 100 20 38 75 0 0 chr1 112791573 112791653 -129872700 + AT_rich Low_complexity Low_complexity 1 80 0 268 376 52 46 chr1 112791696 112791890 -129872463 + L3 LINE CR1 29 223 -1354 240 35 0 0 chr1 112791969 112791998 -129872355 + (TG)n Simple_repeat Simple_repeat 2 30 0 278 263 13 13 chr1 112792765 112792841 -129871512 + MLT1D LTR MaLR 370 445 -60 322 339 50 8 chr1 112792998 112793119 -129871234 + MIR SINE MIR 23 148 -114 240 146 0 0 chr1 112794314 112794369 -129869984 + LTR66 LTR ERVL 385 439 -171 3766 102 8 24 chr1 112794562 112795148 -129869205 + L1PA7 LINE L1 1976 2552 -3594 * 12194 101 2 7 chr1 112795146 112797751 -129866602 + L1PA7 LINE L1 3560 6153 -1 761 100 109 29 chr1 112799765 112799782 -129864571 - L1P1 LINE L1 -676 5479 5465 3847 125 32 0 chr1 112799782 112800397 -129863956 - L1PA16 LINE L1 -4 6162 5528 761 100 109 29 chr1 112800397 112800575 -129863778 - L1P1 LINE L1 -690 5465 5269 4856 229 35 8 chr1 112800681 112801952 -129862401 - L1PA16 LINE L1 -825 5321 4017 801 227 115 77 chr1 112802561 112803179 -129861174 - MER34C LTR ERV1 0 595 4 2672 100 11 0 chr1 112803229 112803600 -129860753 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr1 112803620 112803646 -129860707 + AT_rich Low_complexity Low_complexity 1 26 0 285 341 0 0 chr1 112803715 112803800 -129860553 + MIR SINE MIR 50 134 -128 33 25 0 0 chr1 112804015 112804055 -129860298 + AT_rich Low_complexity Low_complexity 1 40 0 45 0 0 0 chr1 112804585 112804630 -129859723 + AT_rich Low_complexity Low_complexity 1 45 0 188 438 0 0 chr1 112806047 112806136 -129858217 - MIR SINE MIR -86 122 34 26 64 0 0 chr1 112806198 112806245 -129858108 + AT_rich Low_complexity Low_complexity 1 47 0 4194 197 46 52 chr1 112806288 112807377 -129856976 + Tigger6a DNA MER2_type 2 1083 0 230 267 23 46 chr1 112807458 112807589 -129856764 - L1MC4 LINE L1 -1 8041 7914 958 267 82 8 chr1 112807632 112807988 -129856365 - L1MC4 LINE L1 -451 7591 7210 235 279 98 33 chr1 112808033 112808155 -129856198 + L1ME4a LINE L1 5536 5665 -456 271 299 8 8 chr1 112808225 112808352 -129856001 + L1ME4a LINE L1 5777 5903 -218 26 64 0 0 chr1 112808474 112808521 -129855832 + AT_rich Low_complexity Low_complexity 1 47 0 2090 142 11 22 chr1 112808846 112809212 -129855141 - MER47A DNA MER2_type 0 366 5 39 60 0 0 chr1 112809919 112809986 -129854367 + AT_rich Low_complexity Low_complexity 1 67 0 26 64 0 0 chr1 112810592 112810639 -129853714 + AT_rich Low_complexity Low_complexity 1 47 0 1048 126 7 0 chr1 112810685 112810836 -129853517 + AluSq/x SINE Alu 1 152 -160 902 147 0 0 chr1 112810838 112810967 -129853386 + AluSg/x SINE Alu 113 241 -71 24 32 0 0 chr1 112811233 112811264 -129853089 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr1 112811623 112811662 -129852691 + AT_rich Low_complexity Low_complexity 1 39 0 229 313 81 10 chr1 112812108 112812207 -129852146 + MIR SINE MIR 42 147 -115 1741 108 68 0 chr1 112812873 112813122 -129851231 + AluSp SINE Alu 1 266 -47 1220 86 6 0 chr1 112813222 112813384 -129850969 - AluY SINE Alu -148 163 1 612 263 55 35 chr1 112813649 112813961 -129850392 + L1ME2 LINE L1 2046 2363 -4033 1141 208 15 27 chr1 112814036 112814296 -129850057 + AluJo SINE Alu 11 267 -45 387 244 34 44 chr1 112814316 112814521 -129849832 + L1ME2 LINE L1 5230 5432 -783 2426 242 65 6 chr1 112814546 112815239 -129849114 + L1ME2 LINE L1 5499 6232 -1 242 253 0 76 chr1 112815713 112815792 -129848561 - L1MC4 LINE L1 -40 8002 7930 812 225 32 11 chr1 112816051 112816238 -129848115 + MER2 DNA MER2_type 155 345 0 1008 262 128 18 chr1 112817558 112818149 -129846204 - LTR41 LTR ERVL -77 696 1 21 57 0 0 chr1 112820095 112820130 -129844223 + AT_rich Low_complexity Low_complexity 1 35 0 834 185 20 0 chr1 112820454 112820605 -129843748 + L1PB4 LINE L1 6000 6153 -3 318 315 0 0 chr1 112820719 112820808 -129843545 - MIR3 SINE MIR -6 202 114 554 289 34 31 chr1 112820818 112821156 -129843197 - LTR16A LTR ERVL -13 437 15 725 235 91 89 chr1 112821193 112821588 -129842765 + MSTD LTR MaLR 1 396 0 1323 206 33 95 chr1 112821588 112822011 -129842342 + MLT1A1-int LTR MaLR 1 397 -1338 1284 173 87 11 chr1 112821992 112822258 -129842095 + MLT1A1-int LTR MaLR 1450 1735 0 * 786 197 194 39 chr1 112822258 112822574 -129841779 + MLT1A1 LTR MaLR 1 423 -5 237 176 59 29 chr1 112824877 112824979 -129839374 + (TTATA)n Simple_repeat Simple_repeat 2 106 0 506 88 100 0 chr1 112824979 112825139 -129839214 + (TA)n Simple_repeat Simple_repeat 1 176 0 251 145 60 36 chr1 112825142 112825225 -129839128 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 182 255 20 0 chr1 112825228 112825279 -129839074 + L2 LINE L2 3262 3313 0 22 0 0 0 chr1 112825364 112825386 -129838967 + AT_rich Low_complexity Low_complexity 1 22 0 358 75 30 0 chr1 112825651 112825718 -129838635 + (TA)n Simple_repeat Simple_repeat 2 70 0 373 250 96 32 chr1 112826300 112826456 -129837897 - L2 LINE L2 0 3313 3148 329 187 21 59 chr1 112826456 112826643 -129837710 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 252 167 0 0 chr1 112827569 112827617 -129836736 + CT-rich Low_complexity Low_complexity 3 50 0 464 300 100 6 chr1 112828019 112828199 -129836154 - LTR16A LTR ERVL -96 354 158 339 210 49 25 chr1 112829695 112829776 -129834577 + MLT1D LTR MaLR 5 87 -418 844 227 175 59 chr1 112829826 112830214 -129834139 + MLT1D LTR MaLR 64 496 -9 474 301 87 55 chr1 112830224 112830536 -129833817 - HERV16 LTR ERVL -2295 2701 2380 27 29 0 0 chr1 112830592 112830626 -129833727 + AT_rich Low_complexity Low_complexity 1 34 0 1419 167 32 35 chr1 112830627 112830936 -129833417 - AluJo SINE Alu 0 310 3 457 211 92 0 chr1 112830977 112831123 -129833230 - L1MC4 LINE L1 -241 6103 5953 * 2845 232 63 12 chr1 112831119 112832942 -129831411 - L1MC3 LINE L1 -73 7712 5730 1438 199 27 0 chr1 112832944 112833240 -129831113 - L1MC1 LINE L1 0 6333 6030 326 50 0 0 chr1 112833240 112833280 -129831073 - Alu SINE Alu -260 48 9 1002 222 82 47 chr1 112833288 112833708 -129830645 - L1MC3 LINE L1 -1891 4255 3786 1649 213 65 50 chr1 112833714 112834081 -129830272 - L1MC1 LINE L1 -745 5401 5041 207 0 0 0 chr1 112834081 112834104 -129830249 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2005 140 0 0 chr1 112834108 112834400 -129829953 - AluSq SINE Alu -21 292 1 1649 213 65 50 chr1 112834400 112834665 -129829688 - L1MC1 LINE L1 -806 5340 5080 745 315 28 0 chr1 112834812 112835025 -129829328 + MIR SINE MIR 43 261 -1 206 269 26 0 chr1 112835027 112835105 -129829248 + (TTA)n Simple_repeat Simple_repeat 2 81 0 200 300 108 83 chr1 112835675 112835952 -129828401 - L2 LINE L2 -8 3305 3022 347 98 16 0 chr1 112836393 112836454 -129827899 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 2110 195 37 51 chr1 112836793 112837307 -129827046 - MER67D LTR ERV1 -7 507 1 196 402 41 0 chr1 112838006 112838103 -129826250 + L2 LINE L2 3139 3239 -33 24 53 0 0 chr1 112840162 112840200 -129824153 + AT_rich Low_complexity Low_complexity 1 38 0 186 361 48 0 chr1 112841920 112842003 -129822350 + L2 LINE L2 3186 3272 0 24 53 0 0 chr1 112842006 112842044 -129822309 + AT_rich Low_complexity Low_complexity 1 38 0 205 186 0 0 chr1 112842823 112842866 -129821487 + A-rich Low_complexity Low_complexity 1 43 0 1907 158 3 3 chr1 112844129 112844427 -129819926 - AluJb SINE Alu -14 298 1 1252 169 24 68 chr1 112845521 112845816 -129818537 + MER61C LTR ERV1 1 282 -152 565 103 13 0 chr1 112845818 112845896 -129818457 + MER61D LTR ERV1 423 501 0 1757 194 61 3 chr1 112846031 112846376 -129817977 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr1 112849176 112849197 -129815156 + AT_rich Low_complexity Low_complexity 1 21 0 1977 143 110 18 chr1 112850843 112851235 -129813118 - MSTA LTR MaLR 0 428 1 4202 166 21 3 chr1 112851240 112851968 -129812385 - MSTA-int LTR MaLR -5 1646 906 287 292 0 0 chr1 112851987 112852059 -129812294 + L1ME3A LINE L1 5601 5672 -498 212 163 0 0 chr1 112852075 112852118 -129812235 + (TG)n Simple_repeat Simple_repeat 1 43 0 4582 212 12 5 chr1 112852118 112853008 -129811345 + MER54A LTR ERVL 4 900 -1 1044 267 110 9 chr1 112853010 112853429 -129810924 + L1ME3A LINE L1 5660 6120 -50 25 51 0 0 chr1 112853430 112853469 -129810884 + AT_rich Low_complexity Low_complexity 1 39 0 284 314 91 33 chr1 112853479 112853721 -129810632 + L1MEd LINE L1 997 1252 -4867 244 296 151 27 chr1 112853922 112854293 -129810060 + L1MEd LINE L1 2105 2521 -3608 343 284 73 25 chr1 112854403 112854607 -129809746 + L1MEd LINE L1 2653 2866 -3263 410 152 8 45 chr1 112854878 112855010 -129809343 + (TA)n Simple_repeat Simple_repeat 1 127 0 186 71 0 0 chr1 112855067 112855095 -129809258 + (TA)n Simple_repeat Simple_repeat 1 28 0 480 306 27 30 chr1 112855194 112855495 -129808858 + L1MEd LINE L1 3897 4196 -1933 1254 141 19 10 chr1 112855555 112855761 -129808592 - AluJo SINE Alu -21 291 84 13248 179 31 27 chr1 112856049 112858497 -129805856 - L1PB1 LINE L1 0 6867 4431 192 97 0 0 chr1 112858497 112858528 -129805825 + (TTG)n Simple_repeat Simple_repeat 2 32 0 13248 179 31 27 chr1 112858528 112862142 -129802211 - L1PB1 LINE L1 -2436 4431 636 813 125 49 0 chr1 112862144 112862288 -129802065 - L1PB1 LINE L1 -6663 200 50 9809 224 50 34 chr1 112864464 112865108 -129799245 + L1MC1 LINE L1 1254 1886 -4516 300 70 0 0 chr1 112865108 112865151 -129799202 + (TA)n Simple_repeat Simple_repeat 2 44 0 9809 224 50 34 chr1 112865151 112865170 -129799183 + L1MC1 LINE L1 1886 1903 -4499 2378 162 9 21 chr1 112865170 112865602 -129798751 + MSTA LTR MaLR 1 427 -1 9809 224 50 34 chr1 112865602 112870099 -129794254 + L1MC1 LINE L1 1903 6394 -8 523 267 0 0 chr1 112872055 112872171 -129792182 + AluJb SINE Alu 182 297 -15 387 0 0 0 chr1 112872212 112872255 -129792098 + (TTA)n Simple_repeat Simple_repeat 3 45 0 2138 31 4 0 chr1 112872255 112872513 -129791840 - L1PA4 LINE L1 -18 6137 5879 396 306 38 6 chr1 112872955 112873115 -129791238 + LTR33A LTR ERVL 61 225 -298 245 330 23 11 chr1 112873320 112873408 -129790945 - L2 LINE L2 0 3313 3225 1940 193 36 36 chr1 112873518 112874071 -129790282 + MLT2A2 LTR ERVL 1 554 0 440 312 135 41 chr1 112874082 112874509 -129789844 - L2 LINE L2 -157 3156 2674 2084 319 118 26 chr1 112874514 112874597 -129789756 - L2 LINE L2 -1521 1793 1719 2731 13 0 0 chr1 112874597 112874900 -129789453 - AluY SINE Alu -8 303 1 2084 319 118 26 chr1 112874900 112876068 -129788285 - L2 LINE L2 -1595 1719 426 21 36 0 0 chr1 112876265 112876293 -129788060 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 112876417 112876441 -129787912 + AT_rich Low_complexity Low_complexity 1 24 0 347 301 86 21 chr1 112877975 112878161 -129786192 + L1MC4a LINE L1 5762 5959 -1849 24 0 0 0 chr1 112878317 112878341 -129786012 + AT_rich Low_complexity Low_complexity 1 24 0 191 213 188 25 chr1 112879146 112879226 -129785127 + MIR SINE MIR 38 130 -132 248 253 147 0 chr1 112879226 112879321 -129785032 + MIR SINE MIR 79 187 -75 2317 45 7 7 chr1 112879362 112879654 -129784699 + AluY SINE Alu 1 292 -19 34 42 0 0 chr1 112880464 112880512 -129783841 + AT_rich Low_complexity Low_complexity 1 48 0 2769 10 0 0 chr1 112880823 112881129 -129783224 + AluYb8 SINE Alu 1 306 -12 2134 0 0 0 chr1 112881519 112881754 -129782599 - L1P1 LINE L1 -464 5691 5457 * 3921 9 0 0 chr1 112881751 112882195 -129782158 + L1HS LINE L1 5709 6152 -3 32 43 0 0 chr1 112882195 112882241 -129782112 + AT_rich Low_complexity Low_complexity 1 46 0 334 213 25 0 chr1 112882757 112882837 -129781516 + MER53 DNA DNA 2 83 -106 458 309 55 31 chr1 112882986 112883242 -129781111 - LTR16C LTR ERVL -2 489 228 1008 233 138 54 chr1 112883945 112884409 -129779944 - MLT1D LTR MaLR -2 503 1 3790 156 80 39 chr1 112884677 112886052 -129778301 - LTR12 LTR ERV1 -23 1683 22 324 231 66 102 chr1 112887666 112887999 -129776354 + L1ME3A LINE L1 4259 4579 -1567 251 184 44 18 chr1 112888147 112888261 -129776092 + (TA)n Simple_repeat Simple_repeat 1 117 0 789 299 60 45 chr1 112888333 112888530 -129775823 + L1ME3A LINE L1 4752 4944 -1226 369 0 0 0 chr1 112888530 112888571 -129775782 + (CA)n Simple_repeat Simple_repeat 2 42 0 789 299 60 45 chr1 112888571 112889306 -129775047 + L1ME3A LINE L1 4944 5702 -468 849 253 100 20 chr1 112889311 112889612 -129774741 + L1ME3A LINE L1 5823 6147 -23 236 344 0 22 chr1 112890504 112890594 -129773759 - L2 LINE L2 0 3272 3185 631 253 19 61 chr1 112890718 112890944 -129773409 - MER20 DNA MER1_type -1 218 1 317 331 16 0 chr1 112891245 112891366 -129772987 + MIR SINE MIR 85 207 -55 689 163 74 21 chr1 112891971 112892161 -129772192 - Charlie5 DNA MER1_type -27 2585 2386 183 293 24 12 chr1 112892587 112892669 -129771684 - L2 LINE L2 -311 3002 2920 1329 292 150 21 chr1 112892695 112893188 -129771165 - MLT1G1 LTR MaLR 0 595 28 2064 74 0 0 chr1 112893188 112893458 -129770895 - L1PA8 LINE L1 -18 6154 5885 1329 292 150 21 chr1 112893458 112893491 -129770862 - MLT1G1 LTR MaLR -567 28 1 337 337 0 20 chr1 112893528 112893629 -129770724 - L2 LINE L2 -8 3305 3207 805 301 96 38 chr1 112893649 112894047 -129770306 - L2 LINE L2 -443 2871 2451 766 322 65 27 chr1 112894125 112894632 -129769721 - L2 LINE L2 -239 3074 2550 806 317 23 60 chr1 112894858 112895205 -129769148 + LTR16A LTR ERVL 105 438 -12 1845 320 132 7 chr1 112895329 112896157 -129768196 - L2 LINE L2 -1621 1693 763 3789 162 26 100 chr1 112896166 112897184 -129767169 - L1MA8 LINE L1 -150 6141 5200 850 364 42 12 chr1 112897198 112897629 -129766724 - L2 LINE L2 -2768 546 103 682 324 60 37 chr1 112897926 112898000 -129766353 - L1M4 LINE L1 -800 5346 5275 1565 197 0 33 chr1 112898000 112898300 -129766053 - AluJo SINE Alu -22 290 1 682 324 60 37 chr1 112898300 112899110 -129765243 - L1M4 LINE L1 -871 5275 4442 320 326 47 17 chr1 112899395 112899567 -129764786 + MIR SINE MIR 66 242 -20 1075 131 0 46 chr1 112899865 112900040 -129764313 + AluSg/x SINE Alu 125 291 -21 1314 278 84 24 chr1 112901186 112901768 -129762585 + MER20B DNA MER1_type 19 635 -148 303 273 45 18 chr1 112901959 112902069 -129762284 + MER5B DNA MER1_type 51 163 -15 1466 97 17 51 chr1 112902250 112902487 -129761866 + MER30 DNA MER1_type 1 229 -1 640 284 31 27 chr1 112902513 112902735 -129761618 - MER58A DNA MER1_type 0 224 2 1967 140 3 0 chr1 112903102 112903394 -129760959 + AluSx SINE Alu 1 293 -19 6792 178 41 60 chr1 112903407 112904946 -129759407 + L1MC1 LINE L1 10 1518 -4908 8233 238 70 9 chr1 112904968 112907800 -129756553 + L1MC1 LINE L1 2105 5236 -1377 378 0 0 0 chr1 112907800 112907842 -129756511 + (TA)n Simple_repeat Simple_repeat 2 43 0 8233 238 70 9 chr1 112907842 112908796 -129755557 + L1MC1 LINE L1 5236 6130 -483 748 34 0 102 chr1 112908797 112908953 -129755400 + L1PA4 LINE L1 6026 6169 0 2624 171 8 2 chr1 112908953 112909422 -129754931 + L1MC1 LINE L1 6119 6590 -23 1752 181 68 0 chr1 112909927 112910253 -129754100 + MER7A DNA MER2_type 1 346 0 609 325 50 75 chr1 112910647 112911298 -129753055 - L2 LINE L2 0 3313 2682 200 274 0 0 chr1 112911791 112911842 -129752511 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 389 307 126 52 chr1 112911864 112912349 -129752004 + LTR33 LTR ERVL 1 521 0 517 306 185 22 chr1 112912599 112912913 -129751440 + L2 LINE L2 2580 2944 -370 426 347 52 55 chr1 112912955 112913246 -129751107 + L2 LINE L2 3023 3312 -1 1957 123 41 44 chr1 112913640 112914194 -129750159 + MER51A LTR ERV1 1 634 0 21 0 0 0 chr1 112914293 112914314 -129750039 + AT_rich Low_complexity Low_complexity 1 21 0 350 208 31 39 chr1 112914669 112914799 -129749554 - L1MC4 LINE L1 0 8042 7914 194 125 0 25 chr1 112914828 112914868 -129749485 + (CA)n Simple_repeat Simple_repeat 2 40 0 7103 51 2 4 chr1 112914908 112915950 -129748403 + L1PA6 LINE L1 5115 6154 0 25 31 0 0 chr1 112916019 112916051 -129748302 + AT_rich Low_complexity Low_complexity 1 32 0 1437 12 0 0 chr1 112916815 112916980 -129747373 + L1PA4 LINE L1 5989 6153 -2 25 0 0 0 chr1 112918244 112918269 -129746084 + AT_rich Low_complexity Low_complexity 1 25 0 444 305 114 2 chr1 112918440 112918758 -129745595 - L1MEc LINE L1 -2286 3929 3561 319 252 63 21 chr1 112918763 112918906 -129745447 - L1MEc LINE L1 -3295 2920 2772 900 298 83 32 chr1 112919056 112919951 -129744402 - L1MEc LINE L1 -4329 2067 1128 7899 241 67 20 chr1 112920407 112922916 -129741437 - L1MB7 LINE L1 -19 6401 4012 857 225 82 95 chr1 112922916 112923379 -129740974 + MSTB2 LTR MaLR 1 457 0 7899 241 67 20 chr1 112923379 112923406 -129740947 - L1MB7 LINE L1 -2408 4012 3988 1453 199 7 31 chr1 112923406 112923739 -129740614 - AluJo SINE Alu 0 326 1 7899 241 67 20 chr1 112923739 112924982 -129739371 - L1MB7 LINE L1 -2432 3988 2440 2164 270 58 32 chr1 112925061 112925302 -129739051 - L1MB7 LINE L1 -4200 2184 1951 417 113 0 28 chr1 112925302 112925373 -129738980 - L1MC1 LINE L1 0 6333 6265 2164 270 58 32 chr1 112925373 112926180 -129738173 - L1MB7 LINE L1 -4433 1951 1109 314 339 90 20 chr1 112926493 112926847 -129737506 - L1MEc LINE L1 -5994 402 24 2259 88 0 3 chr1 112927000 112927296 -129737057 + AluSc SINE Alu 1 295 -14 213 353 66 38 chr1 112927568 112927877 -129736476 - L2 LINE L2 -223 3049 2703 1459 199 19 61 chr1 112929568 112930257 -129734096 + L1M2 LINE L1 4936 5614 -698 28 61 0 0 chr1 112930257 112930306 -129734047 + AT_rich Low_complexity Low_complexity 1 49 0 470 170 32 0 chr1 112930326 112930420 -129733933 + L1M2 LINE L1 5605 5701 -590 22 0 0 0 chr1 112931243 112931265 -129733088 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 112933424 112933452 -129730901 + AT_rich Low_complexity Low_complexity 1 28 0 2027 107 4 29 chr1 112933879 112934401 -129729952 + L1PA12 LINE L1 5481 6167 -1 22 35 0 0 chr1 112934437 112934466 -129729887 + AT_rich Low_complexity Low_complexity 1 29 0 2423 143 52 0 chr1 112934897 112935302 -129729051 - MSTA LTR MaLR 0 428 3 12348 190 26 14 chr1 112935414 112937244 -129727109 + L1M1 LINE L1 1130 2936 -4629 1783 123 6 103 chr1 112937244 112937585 -129726768 + AluSq SINE Alu 1 308 -5 12348 190 26 14 chr1 112937585 112940201 -129724152 + L1M1 LINE L1 2936 5802 -1763 3313 67 2 20 chr1 112940196 112940656 -129723697 - L1P3 LINE L1 -438 5734 5283 * 2964 72 3 0 chr1 112940656 112941043 -129723310 - L1PA7 LINE L1 -14 6140 5753 455 117 0 13 chr1 112941049 112941126 -129723227 + L1M1 LINE L1 6031 6106 -1459 4421 105 15 3 chr1 112941127 112941793 -129722560 - L1P3 LINE L1 -866 5280 4607 2849 95 3 0 chr1 112941794 112942184 -129722169 + L1PA7 LINE L1 5753 6143 -11 627 202 36 24 chr1 112943060 112943228 -129721125 + L1MA1 LINE L1 4369 4538 -1608 399 79 53 0 chr1 112943228 112943304 -129721049 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 9624 167 15 14 chr1 112943307 112945619 -129718734 - L1PA13 LINE L1 -8 6155 3845 1433 127 166 36 chr1 112945619 112945951 -129718402 + THE1C LTR MaLR 1 375 0 8982 150 32 11 chr1 112945951 112947497 -129716856 + THE1C-int LTR MaLR 1 1579 -1 1532 179 66 36 chr1 112947497 112947861 -129716492 + THE1C LTR MaLR 1 375 0 9624 167 15 14 chr1 112947861 112949027 -129715326 - L1PA13 LINE L1 -2318 3845 2659 1667 172 175 8 chr1 112949027 112949393 -129714960 + MSTA LTR MaLR 1 427 -1 9624 167 15 14 chr1 112949393 112949424 -129714929 - L1PA13 LINE L1 -3504 2659 2630 6050 175 14 3 chr1 112949403 112951175 -129713178 + L1MA1 LINE L1 4509 6302 0 * 1224 199 37 51 chr1 112951200 112951521 -129712832 + MSTC LTR MaLR 59 428 0 361 148 0 0 chr1 112951521 112951582 -129712771 + L1MC3 LINE L1 7453 7513 -272 333 269 10 0 chr1 112951583 112951687 -129712666 + L1MC3 LINE L1 7681 7785 0 317 327 54 12 chr1 112953073 112953241 -129711112 + HAL1 LINE L1 1510 1684 -823 1731 209 71 31 chr1 112953620 112954234 -129710119 + L1MC1 LINE L1 22 772 -5654 5353 167 102 39 chr1 112954243 112955341 -129709012 + L1MC1 LINE L1 851 1878 -4548 2116 181 7 40 chr1 112955341 112955789 -129708564 + Tigger2a DNA MER2_type 2 434 0 300 27 0 0 chr1 112955797 112955834 -129708519 + (TG)n Simple_repeat Simple_repeat 2 38 0 5353 167 102 39 chr1 112955834 112956052 -129708301 + L1MC1 LINE L1 1884 2260 -4166 1341 235 28 36 chr1 112956052 112956410 -129707943 - MLT1A1 LTR MaLR -10 355 1 3060 257 48 20 chr1 112956410 112957766 -129706587 + L1MC1 LINE L1 2256 3692 -2734 829 218 28 28 chr1 112957769 112957980 -129706373 - MLT1A2 LTR MaLR 0 374 164 1485 77 0 10 chr1 112957983 112958191 -129706162 - L1PA4 LINE L1 -2 6153 5948 1661 225 26 0 chr1 112958291 112958708 -129705645 + L1 LINE L1 3225 3652 -2494 11733 31 1 1 chr1 112958724 112960712 -129703641 - L1PA4 LINE L1 -180 5975 3988 198 0 0 0 chr1 112960725 112960747 -129703606 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 579 241 35 21 chr1 112960747 112960892 -129703461 - MLT1A2 LTR MaLR -227 147 1 3183 246 32 24 chr1 112960905 112961812 -129702541 + L1MC1 LINE L1 3707 4624 -1802 985 246 90 42 chr1 112961812 112961843 -129702510 + MLT1A2 LTR MaLR 1 29 -345 1473 224 20 0 chr1 112961843 112962137 -129702216 + AluJb SINE Alu 1 300 -12 985 246 90 42 chr1 112962137 112962462 -129701891 + MLT1A2 LTR MaLR 29 374 0 3183 246 32 24 chr1 112962462 112962590 -129701763 + L1MC1 LINE L1 4624 4750 -1676 681 244 78 33 chr1 112962610 112962917 -129701436 + L1MC1 LINE L1 4834 5154 -1272 10578 61 6 12 chr1 112962917 112964313 -129700040 - L1P LINE L1 -4739 1407 20 4374 34 6 4 chr1 112964313 112964851 -129699502 + L1PA4 LINE L1 5614 6152 -3 551 222 23 34 chr1 112964860 112964901 -129699452 + L1MC1 LINE L1 5144 5184 -1242 3357 134 73 0 chr1 112964901 112965462 -129698891 + LTR43 LTR ERV1 1 602 0 551 222 23 34 chr1 112965462 112965596 -129698757 + L1MC1 LINE L1 5184 5317 -1109 * 3604 7 0 0 chr1 112965594 112965999 -129698354 - L1PA2 LINE L1 -170 5985 5581 4920 166 54 41 chr1 112966029 112966628 -129697725 + L1MC1 LINE L1 5289 5879 -734 233 179 0 0 chr1 112966628 112966667 -129697686 + tRNA-Glu-GAA tRNA tRNA 3 41 -34 4920 166 54 41 chr1 112966667 112967329 -129697024 + L1MC1 LINE L1 5879 6607 -6 244 253 30 20 chr1 112967611 112967710 -129696643 + HAL1 LINE L1 2244 2343 -164 240 163 0 23 chr1 112968451 112968494 -129695859 + MER94 DNA DNA 6 47 -87 261 0 0 0 chr1 112969516 112969545 -129694808 + (CA)n Simple_repeat Simple_repeat 2 30 0 300 297 79 36 chr1 112969795 112969960 -129694393 + L2 LINE L2 2694 2865 -449 1452 254 91 106 chr1 112970675 112971455 -129692898 + L2 LINE L2 1985 2752 -562 475 218 15 68 chr1 112972600 112972733 -129691620 - MER58B DNA MER1_type -16 325 200 1707 285 39 74 chr1 112972774 112973825 -129690528 + L1MEc LINE L1 113 1126 -5270 393 273 118 50 chr1 112973989 112974150 -129690203 + MER5B DNA MER1_type 1 172 -6 218 237 13 13 chr1 112975111 112975187 -129689166 + (TAA)n Simple_repeat Simple_repeat 1 76 0 1655 232 20 23 chr1 112976083 112976480 -129687873 + L1M3e LINE L1 9 404 -6626 25 31 0 0 chr1 112976507 112976539 -129687814 + AT_rich Low_complexity Low_complexity 1 32 0 2745 178 17 11 chr1 112976548 112977088 -129687265 + L1MB1 LINE L1 5568 6110 -58 213 39 0 0 chr1 112977257 112977283 -129687070 + (CA)n Simple_repeat Simple_repeat 2 27 0 2330 263 20 46 chr1 112977287 112978374 -129685979 + L1MEc LINE L1 2141 3157 -3058 1199 122 11 0 chr1 112978374 112978563 -129685790 + AluSg/x SINE Alu 121 311 -1 471 266 55 27 chr1 112978633 112978926 -129685427 + L1MEc LINE L1 3195 3495 -2720 567 260 35 23 chr1 112978939 112979112 -129685241 - MLT1E LTR MaLR -3 590 416 446 313 73 46 chr1 112979184 112979555 -129684798 + L1MEc LINE L1 4137 4517 -1698 33 0 0 0 chr1 112980672 112980705 -129683648 + AT_rich Low_complexity Low_complexity 1 33 0 544 309 15 45 chr1 112980868 112981133 -129683220 - L1ME1 LINE L1 -5 6161 5905 613 348 42 17 chr1 112981210 112981446 -129682907 - L2 LINE L2 -253 3060 2819 2470 176 4 29 chr1 112981454 112981932 -129682421 - MLT1C LTR MaLR -1 466 1 1132 322 38 6 chr1 112981961 112982589 -129681764 + L1ME2 LINE L1 3551 4198 -1948 * 1299 271 39 19 chr1 112982584 112983067 -129681286 + L1ME2 LINE L1 5662 6154 -10 297 51 0 0 chr1 112983907 112983946 -129680407 + (CA)n Simple_repeat Simple_repeat 2 40 0 882 161 6 77 chr1 112986104 112986272 -129678081 + FAM SINE Alu 10 165 -20 1657 151 37 4 chr1 112986481 112986800 -129677553 + AluSx SINE Alu 2 329 0 944 256 90 29 chr1 112987432 112987769 -129676584 - Charlie2 DNA MER1_type -282 2580 2198 192 77 0 0 chr1 112987769 112987795 -129676558 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 944 256 90 29 chr1 112987795 112987981 -129676372 - Charlie2 DNA MER1_type -664 2198 2025 333 263 69 25 chr1 112988027 112988187 -129676166 - Charlie2 DNA MER1_type -928 1934 1768 372 121 0 0 chr1 112988223 112988281 -129676072 - HY3 scRNA scRNA -5 96 39 256 313 72 36 chr1 112988604 112988770 -129675583 - Charlie2b DNA MER1_type -2103 679 508 * 569 219 0 48 chr1 112988767 112988913 -129675440 - Charlie2b DNA MER1_type -2468 314 176 2422 156 22 39 chr1 112989096 112989633 -129674720 - L1MB4 LINE L1 0 6180 5653 843 273 82 37 chr1 112990801 112991179 -129673174 + L1MEc LINE L1 34 428 -5968 1822 181 106 0 chr1 112991246 112991650 -129672703 + L1 LINE L1 3712 4158 -1988 7200 35 0 2 chr1 112991651 112992521 -129671832 - L1PA3 LINE L1 -1692 4454 3587 7969 25 0 0 chr1 112992521 112994239 -129670114 + L1PA3 LINE L1 4440 6155 0 3675 181 56 53 chr1 112994245 112994415 -129669938 + L1 LINE L1 4151 4319 -1827 4204 205 45 15 chr1 112994415 112995290 -129669063 - MER54A LTR ERVL 0 901 1 3675 181 56 53 chr1 112995290 112996091 -129668262 + L1 LINE L1 4319 5124 -1022 1744 170 28 54 chr1 112996092 112996481 -129667872 + MER44D DNA MER2_type 172 605 0 479 205 74 0 chr1 112998025 112998147 -129666206 - MER110A LTR ERV1 -337 131 1 387 0 0 0 chr1 112998363 112998406 -129665947 + (TG)n Simple_repeat Simple_repeat 2 44 0 237 302 180 6 chr1 112998599 112998712 -129665641 + MIR SINE MIR 60 152 -110 970 186 19 0 chr1 112998712 112998873 -129665480 + FAM SINE Alu 2 165 -10 237 302 180 6 chr1 112998873 112998931 -129665422 + MIR SINE MIR 152 261 -1 24 32 0 0 chr1 112998931 112998962 -129665391 + AT_rich Low_complexity Low_complexity 1 31 0 240 288 0 0 chr1 112999432 112999505 -129664848 + (TAA)n Simple_repeat Simple_repeat 1 73 0 1107 222 52 16 chr1 112999761 113000126 -129664227 - LTR37A LTR ERV1 -3 423 46 962 266 57 95 chr1 113000278 113001085 -129663268 - MER31-int LTR ERV1 -836 4100 3325 236 306 0 16 chr1 113001191 113001253 -129663100 - MER5B DNA MER1_type -97 81 21 25 51 0 0 chr1 113001294 113001333 -129663020 + AT_rich Low_complexity Low_complexity 1 39 0 2122 124 33 36 chr1 113001333 113001695 -129662658 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr1 113002224 113002253 -129662100 + AT_rich Low_complexity Low_complexity 1 29 0 1146 235 78 59 chr1 113002568 113003006 -129661347 - MER50 LTR ERV1 0 734 289 464 236 107 21 chr1 113003105 113003245 -129661108 - MER50 LTR ERV1 -566 168 17 498 259 18 18 chr1 113003260 113003430 -129660923 + Charlie1 DNA MER1_type 2564 2733 -28 577 214 104 6 chr1 113003437 113003619 -129660734 - LTR37A LTR ERV1 -177 249 50 25 31 0 0 chr1 113004397 113004429 -129659924 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 113005064 113005087 -129659266 + AT_rich Low_complexity Low_complexity 1 23 0 3604 108 212 0 chr1 113005747 113006393 -129657960 + L1PA8 LINE L1 2059 2841 -3305 264 143 0 0 chr1 113006393 113006461 -129657892 + AluSc SINE Alu 237 304 0 16462 107 5 17 chr1 113006464 113008938 -129655415 + L1PA8 LINE L1 2827 5294 -878 2297 69 3 3 chr1 113008938 113009253 -129655100 + AluY SINE Alu 1 315 0 16462 107 5 17 chr1 113009253 113010116 -129654237 + L1PA8 LINE L1 5294 6166 -6 1276 233 99 31 chr1 113010289 113010464 -129653889 - MLT1F1 LTR MaLR -2 540 378 1744 178 141 24 chr1 113010464 113010875 -129653478 - MLT1C LTR MaLR -4 463 5 1276 233 99 31 chr1 113010875 113011206 -129653147 - MLT1F1 LTR MaLR -164 378 1 233 346 98 13 chr1 113012369 113012522 -129651831 + L1MEd LINE L1 543 708 -5411 180 0 0 0 chr1 113013347 113013367 -129650986 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr1 113013461 113013489 -129650864 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr1 113014614 113014657 -129649696 + AT_rich Low_complexity Low_complexity 1 43 0 403 228 79 0 chr1 113015424 113015525 -129648828 - Tigger3(Golem) DNA MER2_type -2 3027 2919 276 275 0 14 chr1 113015648 113015717 -129648636 - Tigger3(Golem) DNA MER2_type -2949 80 13 1471 178 119 26 chr1 113017103 113017446 -129646907 + THE1C LTR MaLR 1 375 0 9000 148 17 45 chr1 113017448 113019065 -129645288 + THE1C-int LTR MaLR 3 1574 -6 1818 141 54 38 chr1 113019070 113019439 -129644914 + THE1C LTR MaLR 1 375 0 236 77 26 0 chr1 113019626 113019665 -129644688 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 331 346 18 98 chr1 113019673 113020044 -129644309 - L2 LINE L2 -251 3062 2721 1329 300 148 75 chr1 113020089 113021234 -129643119 - L2 LINE L2 -1406 1908 657 3584 157 36 13 chr1 113021234 113021928 -129642425 + MER67C LTR ERV1 1 710 0 1329 300 148 75 chr1 113021928 113022067 -129642286 - L2 LINE L2 -2657 657 530 917 269 133 65 chr1 113022897 113023362 -129640991 - MLT1F1 LTR MaLR -8 559 63 34 0 0 0 chr1 113023677 113023711 -129640642 + AT_rich Low_complexity Low_complexity 1 34 0 224 261 43 43 chr1 113024235 113024327 -129640026 + MIR SINE MIR 148 239 -23 1163 201 52 34 chr1 113024528 113024796 -129639557 + AluJo SINE Alu 14 286 -26 593 119 10 0 chr1 113024803 113024904 -129639449 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 434 294 129 6 chr1 113024905 113025255 -129639098 - L1MCa LINE L1 -2563 3863 3471 371 19 0 38 chr1 113025263 113025316 -129639037 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 841 117 8 0 chr1 113025316 113025436 -129638917 - AluSq/x SINE Alu -192 121 1 2346 230 68 29 chr1 113025436 113025638 -129638715 - L1MCa LINE L1 -2950 3476 3283 2048 78 14 7 chr1 113025638 113025808 -129638545 - AluY SINE Alu -11 300 126 531 0 0 0 chr1 113025808 113025867 -129638486 + (TG)n Simple_repeat Simple_repeat 2 60 0 2048 78 14 7 chr1 113025867 113025977 -129638376 - AluY SINE Alu -185 126 18 2346 230 68 29 chr1 113025977 113027202 -129637151 - L1MCa LINE L1 -3143 3283 1994 3238 234 96 22 chr1 113027229 113028370 -129635983 + L1MD2 LINE L1 5098 6339 -20 436 348 147 14 chr1 113030980 113031348 -129633005 + L2 LINE L2 1859 2275 -1039 378 266 26 9 chr1 113031380 113031493 -129632860 + MIR SINE MIR 1 115 -147 234 324 19 19 chr1 113031521 113031629 -129632724 + MIR SINE MIR 97 204 -58 192 228 0 0 chr1 113031659 113031716 -129632637 + (TA)n Simple_repeat Simple_repeat 2 58 0 283 219 47 0 chr1 113031722 113031786 -129632567 + MIR SINE MIR 196 262 0 1368 201 28 90 chr1 113032433 113032832 -129631521 - MLT1A2 LTR MaLR 0 374 1 203 338 166 19 chr1 113033576 113033733 -129630620 + L2 LINE L2 3121 3300 -13 771 269 41 0 chr1 113034579 113034821 -129629532 + L1ME3A LINE L1 5851 6102 -68 2148 100 17 7 chr1 113034831 113035130 -129629223 + AluSx SINE Alu 2 303 -9 372 317 28 14 chr1 113035169 113035311 -129629042 - MIR SINE MIR -105 157 14 23 97 0 0 chr1 113035541 113035613 -129628740 + AT_rich Low_complexity Low_complexity 1 72 0 8728 36 0 0 chr1 113035627 113036691 -129627662 + L1P LINE L1 3124 4187 -1959 22 56 0 0 chr1 113036803 113036839 -129627514 + AT_rich Low_complexity Low_complexity 1 36 0 2542 101 17 12 chr1 113037517 113037925 -129626428 + L1MA4 LINE L1 5885 6294 -6 274 308 224 0 chr1 113038034 113038141 -129626212 + MER91A DNA MER1_type 12 142 -54 622 219 0 16 chr1 113038516 113038644 -129625709 + FLAM_A SINE Alu 1 126 -7 26 50 0 0 chr1 113038689 113038729 -129625624 + AT_rich Low_complexity Low_complexity 1 40 0 271 346 69 31 chr1 113038835 113038965 -129625388 - L2 LINE L2 -1 3271 3137 343 331 204 0 chr1 113038990 113039162 -129625191 - MIR SINE MIR -2 260 54 217 356 28 44 chr1 113039217 113039397 -129624956 - L2 LINE L2 -155 3158 2982 1535 230 151 41 chr1 113039889 113040075 -129624278 + L1MB8 LINE L1 3921 4085 -2061 1743 159 17 3 chr1 113040075 113040370 -129623983 - AluSx SINE Alu -13 299 1 1535 230 151 41 chr1 113040370 113041006 -129623347 + L1MB8 LINE L1 4085 4833 -1313 406 201 95 85 chr1 113041017 113041206 -129623147 + L1MB8 LINE L1 4977 5167 -979 2357 209 43 60 chr1 113041211 113041444 -129622909 + L1MB8 LINE L1 5449 5685 -493 899 126 7 0 chr1 113041444 113041586 -129622767 + L1PB1 LINE L1 6003 6146 -5 2357 209 43 60 chr1 113041586 113041872 -129622481 + L1MB8 LINE L1 5685 5956 -222 1614 211 10 0 chr1 113041872 113042176 -129622177 + AluJb SINE Alu 1 307 -5 2357 209 43 60 chr1 113042176 113042349 -129622004 + L1MB8 LINE L1 5956 6130 -48 233 191 32 0 chr1 113042372 113042435 -129621918 + (TA)n Simple_repeat Simple_repeat 1 65 0 22 0 0 0 chr1 113042447 113042469 -129621884 + AT_rich Low_complexity Low_complexity 1 22 0 268 296 10 0 chr1 113042631 113042729 -129621624 + L1ME LINE L1 58 156 -5914 198 0 0 0 chr1 113042934 113042956 -129621397 + (A)n Simple_repeat Simple_repeat 1 22 0 1508 282 71 47 chr1 113043082 113043427 -129620926 + L1ME LINE L1 178 513 -5567 2155 72 65 0 chr1 113043427 113043719 -129620634 + AluY SINE Alu 1 311 0 1508 282 71 47 chr1 113043719 113045568 -129618785 + L1ME LINE L1 513 2876 -3204 187 278 14 42 chr1 113046437 113046509 -129617844 + MIR SINE MIR 97 166 -96 254 367 58 16 chr1 113046651 113046839 -129617514 - L2 LINE L2 -13 3300 3105 1654 330 99 52 chr1 113046925 113047999 -129616354 - L2 LINE L2 -337 2977 1854 243 192 19 19 chr1 113048379 113048431 -129615922 + MLT1L LTR MaLR 439 490 -125 23 0 0 0 chr1 113048755 113048778 -129615575 + AT_rich Low_complexity Low_complexity 1 23 0 569 344 75 23 chr1 113049419 113049768 -129614585 + HERV16 LTR ERVL 1905 2271 -2725 450 373 26 19 chr1 113050038 113050309 -129614044 + HERV16 LTR ERVL 2655 2927 -2069 1854 161 11 0 chr1 113050314 113050593 -129613760 - AluSx SINE Alu -28 284 3 774 146 0 0 chr1 113050599 113050722 -129613631 - AluSq/x SINE Alu -180 133 11 818 271 156 12 chr1 113051450 113051853 -129612500 - L1ME1 LINE L1 -3 6163 5703 507 246 143 84 chr1 113051840 113052307 -129612046 + L1M4 LINE L1 4356 4794 -1352 * 1293 0 0 0 chr1 113052307 113052451 -129611902 - L1PA2 LINE L1 -4 6151 6008 507 246 143 84 chr1 113052451 113052787 -129611566 + L1M4 LINE L1 4794 5220 -926 2175 156 55 26 chr1 113052787 113053203 -129611150 - MSTA LTR MaLR 0 428 1 507 246 143 84 chr1 113053203 113053295 -129611058 + L1M4 LINE L1 5220 5305 -841 325 278 74 28 chr1 113053303 113053553 -129610800 - L1ME1 LINE L1 -749 5397 5154 452 244 77 19 chr1 113053985 113054113 -129610240 + MLT1B LTR MaLR 1 137 -253 1631 155 28 160 chr1 113054113 113054570 -129609783 - MSTB1 LTR MaLR 0 432 36 310 244 0 0 chr1 113054666 113054748 -129609605 + MLT1B LTR MaLR 187 268 -122 288 130 0 0 chr1 113054790 113054836 -129609517 - MADE1 DNA Mariner -34 46 1 3097 112 41 0 chr1 113054885 113055483 -129608870 - L1PA8A LINE L1 -633 5498 4884 304 333 61 0 chr1 113055483 113055615 -129608738 + L1MEc LINE L1 1360 1499 -4897 468 314 102 39 chr1 113055844 113056353 -129608000 + L1MEc LINE L1 1858 2398 -3998 2047 119 0 0 chr1 113056573 113056882 -129607471 - AluSx SINE Alu 0 314 6 184 208 19 57 chr1 113056915 113056968 -129607385 - L2 LINE L2 -1890 1424 1374 273 344 94 17 chr1 113056968 113057148 -129607205 - L2 LINE L2 -2139 1175 982 21 0 0 0 chr1 113057269 113057290 -129607063 + AT_rich Low_complexity Low_complexity 1 21 0 319 328 59 32 chr1 113058003 113058189 -129606164 + MIR SINE MIR 51 241 -21 7392 146 21 30 chr1 113058532 113059844 -129604509 + Tigger1 DNA MER2_type 1 1301 -1117 704 43 0 11 chr1 113061186 113061279 -129603074 + (GAA)n Simple_repeat Simple_repeat 3 94 0 182 190 120 70 chr1 113061548 113061648 -129602705 + MIR SINE MIR 92 196 -66 4958 138 10 1 chr1 113061839 113062624 -129601729 + Tigger1 DNA MER2_type 1295 2086 -332 711 195 0 0 chr1 113062625 113062753 -129601600 + AluSg/x SINE Alu 168 295 -15 1880 174 6 3 chr1 113062754 113063075 -129601278 + Tigger1 DNA MER2_type 2091 2412 -6 407 271 66 12 chr1 113063104 113063270 -129601083 - L1ME1 LINE L1 -23 6143 5969 370 269 31 8 chr1 113063296 113063426 -129600927 - L1MD3 LINE L1 -15 7980 7848 240 346 48 53 chr1 113063804 113063992 -129600361 - LTR33A LTR ERVL -335 188 2 9311 58 5 0 chr1 113064150 113066200 -129598153 + L1PA6 LINE L1 4132 6153 -1 304 281 178 22 chr1 113066445 113066630 -129597723 + L1 LINE L1 4479 4692 -1454 727 191 7 7 chr1 113066633 113066785 -129597568 + L1 LINE L1 4908 5059 -1087 1417 117 22 13 chr1 113066894 113067124 -129597229 - L1P5 LINE L1 -437 5714 5483 6474 40 5 7 chr1 113067158 113067965 -129596388 - L1PA4 LINE L1 -7 6148 5344 * 10957 68 17 5 chr1 113067952 113069836 -129594517 + L1PA8 LINE L1 3920 5838 -334 1970 107 4 0 chr1 113069836 113070141 -129594212 + AluSp SINE Alu 20 325 0 10957 68 17 5 chr1 113070141 113070314 -129594039 + L1PA8 LINE L1 5838 6007 -165 235 299 37 0 chr1 113070428 113070535 -129593818 - L1MD3 LINE L1 -769 7226 7116 921 279 85 77 chr1 113071052 113071702 -129592651 - MER21B LTR ERV1 -149 714 60 5732 187 38 77 chr1 113071922 113073460 -129590893 + L1MCa LINE L1 22 1500 -4926 21 0 0 0 chr1 113073555 113073576 -129590777 + AT_rich Low_complexity Low_complexity 1 21 0 230 284 43 35 chr1 113073879 113074020 -129590333 + L1MDa LINE L1 1782 1923 -5018 946 280 62 37 chr1 113074124 113074560 -129589793 + L1MDa LINE L1 23 469 -5954 193 260 123 52 chr1 113074914 113075068 -129589285 - MIR SINE MIR -1 261 97 519 56 0 0 chr1 113075548 113075619 -129588734 + (TA)n Simple_repeat Simple_repeat 2 72 0 29 78 0 0 chr1 113077540 113077604 -129586749 + AT_rich Low_complexity Low_complexity 1 64 0 357 287 55 93 chr1 113077658 113077947 -129586406 + L1 LINE L1 3739 4016 -2130 232 293 0 13 chr1 113077984 113078059 -129586294 + L1 LINE L1 4066 4139 -2007 418 192 58 70 chr1 113078711 113078766 -129585587 + L1MDa LINE L1 3042 3096 -3845 2183 122 3 0 chr1 113078766 113079070 -129585283 + AluSp SINE Alu 2 306 -7 418 192 58 70 chr1 113079070 113079170 -129585183 + L1MDa LINE L1 3096 3195 -3746 2964 276 67 45 chr1 113079170 113079843 -129584510 + L1MDa LINE L1 3900 4557 -2384 232 191 21 0 chr1 113079843 113079890 -129584463 - MADE1 DNA Mariner 0 80 33 2964 276 67 45 chr1 113079890 113079902 -129584451 + L1MDa LINE L1 4557 4567 -2374 216 0 0 0 chr1 113079902 113079926 -129584427 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2964 276 67 45 chr1 113079926 113080934 -129583419 + L1MDa LINE L1 4567 5741 -1200 198 297 78 39 chr1 113081118 113081246 -129583107 + MIR SINE MIR 57 189 -73 25 31 0 0 chr1 113081356 113081388 -129582965 + AT_rich Low_complexity Low_complexity 1 32 0 777 144 0 38 chr1 113082112 113082244 -129582109 + FLAM_C SINE Alu 2 128 -5 7250 42 3 0 chr1 113082543 113084172 -129580181 + L1PA5 LINE L1 4519 6150 -4 21 0 0 0 chr1 113085502 113085523 -129578830 + AT_rich Low_complexity Low_complexity 1 21 0 261 339 40 57 chr1 113085809 113085933 -129578420 + MIR SINE MIR 4 125 -137 201 121 0 0 chr1 113085934 113085967 -129578386 + (T)n Simple_repeat Simple_repeat 1 33 0 424 349 37 41 chr1 113086198 113086493 -129577860 + L1M4 LINE L1 8 301 -6241 566 229 43 125 chr1 113086703 113087016 -129577337 + L1M4 LINE L1 612 868 -5674 1957 34 4 0 chr1 113087036 113087274 -129577079 - L1PA3 LINE L1 -175 5980 5742 1343 46 0 23 chr1 113087274 113087445 -129576908 + L1PA3 LINE L1 5987 6155 0 2630 249 58 62 chr1 113087476 113087582 -129576771 + L1M4 LINE L1 892 997 -5647 2224 71 0 3 chr1 113087582 113087910 -129576443 + AluY SINE Alu 1 327 0 2630 249 58 62 chr1 113087910 113088177 -129576176 + L1M4 LINE L1 997 1263 -5381 1741 182 62 14 chr1 113088177 113088535 -129575818 + THE1C LTR MaLR 1 375 0 2630 249 58 62 chr1 113088535 113090090 -129574263 + L1M4 LINE L1 1263 2836 -3808 993 249 0 9 chr1 113090090 113090319 -129574034 - MER46A DNA MER2_type -1 235 9 1155 251 35 48 chr1 113090319 113090334 -129574019 + L1M4 LINE L1 2843 2857 -3787 189 0 0 0 chr1 113090334 113090355 -129573998 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1155 251 35 48 chr1 113090355 113090878 -129573475 + L1M4 LINE L1 2857 3374 -3270 504 186 10 20 chr1 113090879 113090969 -129573384 + THE1C LTR MaLR 1 89 -339 436 111 0 0 chr1 113090969 113091032 -129573321 + LTR9 LTR ERV1 1 63 -549 6898 146 35 57 chr1 113091032 113091818 -129572535 + HUERS-P3 LTR ERV1 255 1002 -7917 2399 53 0 10 chr1 113091818 113092120 -129572233 - AluY SINE Alu -12 299 1 6898 146 35 57 chr1 113092120 113092625 -129571728 + HUERS-P3 LTR ERV1 1002 1517 -7402 16011 135 17 1 chr1 113092627 113095011 -129569342 + HUERS-P3 LTR ERV1 4234 6655 -2264 12720 155 14 7 chr1 113095004 113097019 -129567334 + HUERS-P3 LTR ERV1 6888 8917 -2 * 3658 158 43 0 chr1 113097020 113097607 -129566746 + LTR9 LTR ERV1 1 612 0 1469 174 18 14 chr1 113097607 113097888 -129566465 + THE1C LTR MaLR 94 375 0 1725 266 52 30 chr1 113097899 113098492 -129565861 + L1M4 LINE L1 3392 4009 -2635 2074 102 0 14 chr1 113098492 113098775 -129565578 + AluSg SINE Alu 18 296 -14 1725 266 52 30 chr1 113098775 113099003 -129565350 + L1M4 LINE L1 4009 4231 -2413 40954 46 2 1 chr1 113099015 113105161 -129559192 + L1PA4 LINE L1 2 6154 -1 537 234 18 47 chr1 113105291 113105462 -129558891 + L1ME3A LINE L1 5995 6160 -10 3123 169 44 62 chr1 113106960 113107749 -129556604 + L1MA7 LINE L1 5517 6291 0 1957 101 3 89 chr1 113107792 113108118 -129556235 - AluSp SINE Alu -13 300 3 762 303 80 88 chr1 113108263 113108987 -129555366 - L2 LINE L2 -1 3312 2591 225 290 0 0 chr1 113108995 113109057 -129555296 - MIR SINE MIR 0 262 201 22 56 0 0 chr1 113109130 113109166 -129555187 + AT_rich Low_complexity Low_complexity 1 36 0 43820 42 4 1 chr1 113109166 113115295 -129549058 - L1PA4 LINE L1 -3 6152 3 32 43 0 0 chr1 113115770 113115816 -129548537 + AT_rich Low_complexity Low_complexity 1 46 0 547 338 4 22 chr1 113115903 113116134 -129548219 + L1MEc LINE L1 36 262 -6134 616 257 7 14 chr1 113116149 113116289 -129548064 - MLT1E LTR MaLR -454 139 1 722 177 48 24 chr1 113116503 113116712 -129547641 + L1ME1 LINE L1 5676 5889 -277 22 56 0 0 chr1 113116828 113116864 -129547489 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr1 113118476 113118506 -129545847 + AT_rich Low_complexity Low_complexity 1 30 0 339 240 0 13 chr1 113118527 113118602 -129545751 + MER119 DNA MER1_type 500 573 -10 823 236 14 39 chr1 113119936 113120144 -129544209 + MER58A DNA MER1_type 19 221 -3 644 273 140 36 chr1 113120595 113121101 -129543252 + MLT1F1 LTR MaLR 9 555 0 5859 38 0 1 chr1 113121818 113122522 -129541831 + L1PA5 LINE L1 5450 6152 -2 27 29 0 0 chr1 113122701 113122735 -129541618 + AT_rich Low_complexity Low_complexity 1 34 0 226 250 30 23 chr1 113122738 113122870 -129541483 + L1MC5 LINE L1 7615 7747 -214 1504 182 90 9 chr1 113123058 113123393 -129540960 - L1MA9 LINE L1 0 6312 5951 * 2008 271 72 31 chr1 113123388 113125025 -129539328 - L1 LINE L1 -3606 2776 1031 1598 267 195 14 chr1 113125008 113125597 -129538756 - L1M3c LINE L1 -4983 1158 463 * 562 277 84 13 chr1 113125601 113125756 -129538597 - L1M3c LINE L1 -5780 361 196 1800 157 17 3 chr1 113125756 113125920 -129538433 - AluSq SINE Alu -16 297 126 7284 27 7 0 chr1 113125920 113127273 -129537080 - L1PA4 LINE L1 -5 6150 4784 1800 157 17 3 chr1 113127273 113127401 -129536952 - AluSq SINE Alu -187 126 1 436 265 167 12 chr1 113127401 113127563 -129536790 - L1M3c LINE L1 -5954 187 1 257 352 139 0 chr1 113127811 113127919 -129536434 + L2 LINE L2 3143 3265 -7 548 282 96 19 chr1 113129018 113129227 -129535126 - MIR SINE MIR -31 231 7 789 272 140 17 chr1 113129377 113129785 -129534568 - MLT1C LTR MaLR 0 467 10 21 36 0 0 chr1 113129863 113129891 -129534462 + AT_rich Low_complexity Low_complexity 1 28 0 2129 193 33 5 chr1 113130228 113130658 -129533695 + L1MA4 LINE L1 5681 6122 -178 295 99 86 19 chr1 113130685 113130847 -129533506 + (TA)n Simple_repeat Simple_repeat 1 173 0 420 73 85 24 chr1 113130898 113131062 -129533291 + (TA)n Simple_repeat Simple_repeat 2 175 0 1284 222 17 38 chr1 113131145 113131438 -129532915 - L1PA15-16 LINE L1 -6116 733 447 236 172 0 16 chr1 113131958 113132022 -129532331 + (TA)n Simple_repeat Simple_repeat 1 63 0 290 295 23 69 chr1 113132382 113132599 -129531754 - L1ME LINE L1 -4981 1089 883 226 213 0 0 chr1 113132813 113132860 -129531493 - L1ME LINE L1 -5930 140 94 1208 273 135 38 chr1 113132939 113133696 -129530657 - L1ME3A LINE L1 -26 6213 5385 1308 258 74 57 chr1 113133725 113134360 -129529993 + MLT1E2 LTR MaLR 1 626 0 306 329 68 6 chr1 113134360 113134521 -129529832 - L1ME3A LINE L1 -4860 1536 1366 2361 263 54 22 chr1 113134580 113135204 -129529149 + L1ME1 LINE L1 5188 5896 -270 1678 161 89 20 chr1 113135204 113135553 -129528800 - THE1C LTR MaLR -2 373 1 2361 263 54 22 chr1 113135553 113135829 -129528524 + L1ME1 LINE L1 5896 6162 -4 1489 180 3 41 chr1 113136220 113136515 -129527838 + AluJb SINE Alu 1 284 -28 216 111 0 0 chr1 113136515 113136551 -129527802 + (TA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr1 113137110 113137133 -129527220 + AT_rich Low_complexity Low_complexity 1 23 0 590 288 98 21 chr1 113137140 113137427 -129526926 - MLT1H LTR MaLR -105 444 190 267 265 32 54 chr1 113137592 113137732 -129526621 - MLT1H LTR MaLR -271 162 42 416 327 78 14 chr1 113137886 113138103 -129526250 + MIR SINE MIR 32 262 0 647 364 107 20 chr1 113138224 113139264 -129525089 + L2 LINE L2 2144 3278 -35 602 256 90 23 chr1 113140157 113140315 -129524038 + L1M4 LINE L1 4812 4958 -1188 390 42 0 0 chr1 113140315 113140363 -129523990 + (CA)n Simple_repeat Simple_repeat 2 49 0 602 256 90 23 chr1 113140363 113140505 -129523848 + L1M4 LINE L1 4958 5132 -1014 587 226 50 39 chr1 113140897 113141078 -129523275 + L2 LINE L2 2687 2869 -445 227 333 0 0 chr1 113141127 113141181 -129523172 + L2 LINE L2 3009 3062 -251 25 0 0 0 chr1 113142563 113142588 -129521765 + AT_rich Low_complexity Low_complexity 1 25 0 2259 106 7 0 chr1 113142589 113142916 -129521437 - AluSp SINE Alu 0 329 1 231 149 30 30 chr1 113144012 113144079 -129520274 + (TA)n Simple_repeat Simple_repeat 1 67 0 252 260 10 29 chr1 113144172 113144276 -129520077 + HAL1b LINE L1 635 736 -612 2597 23 7 3 chr1 113144510 113144817 -129519536 + AluY SINE Alu 1 308 -3 27 0 0 0 chr1 113145028 113145055 -129519298 + AT_rich Low_complexity Low_complexity 1 27 0 1053 199 39 13 chr1 113145164 113145395 -129518958 - THE1C LTR MaLR 0 375 139 7004 40 0 0 chr1 113145395 113146263 -129518090 - L1PA5 LINE L1 -955 5191 4324 7255 44 6 0 chr1 113146263 113147193 -129517160 + L1PA5 LINE L1 5213 6148 -2 441 0 0 0 chr1 113147193 113147242 -129517111 + (TA)n Simple_repeat Simple_repeat 2 50 0 795 189 31 19 chr1 113147246 113147405 -129516948 - THE1C LTR MaLR -214 161 1 510 320 75 35 chr1 113147813 113148304 -129516049 + HAL1 LINE L1 94 604 -1903 218 229 16 0 chr1 113148483 113148544 -129515809 + (TA)n Simple_repeat Simple_repeat 2 63 0 27 73 0 0 chr1 113148731 113148786 -129515567 + AT_rich Low_complexity Low_complexity 1 55 0 228 303 45 0 chr1 113148860 113148926 -129515427 - MER21A LTR ERV1 -190 741 673 * 1695 257 47 24 chr1 113148914 113149448 -129514905 - MER77 LTR ERV1 -6 599 54 287 342 58 25 chr1 113149551 113149794 -129514559 + HAL1 LINE L1 1535 1785 -722 6340 218 111 39 chr1 113149811 113152193 -129512160 + L1M1 LINE L1 14 2947 -4618 218 32 32 0 chr1 113152193 113152224 -129512129 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6340 218 111 39 chr1 113152224 113152341 -129512012 + L1M1 LINE L1 2947 3054 -4511 503 113 0 0 chr1 113152341 113152421 -129511932 + L1MA3 LINE L1 6226 6305 0 395 285 73 67 chr1 113153793 113153958 -129510395 - MLT1E LTR MaLR -221 372 207 741 181 0 0 chr1 113153958 113154113 -129510240 - L1P LINE L1 -2942 3204 3050 1805 177 112 13 chr1 113154148 113154595 -129509758 - LTR54B LTR ERV1 0 498 8 460 254 127 23 chr1 113154617 113154790 -129509563 - MLT1E LTR MaLR -402 191 1 183 80 0 0 chr1 113154865 113154890 -129509463 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr1 113156045 113156069 -129508284 + AT_rich Low_complexity Low_complexity 1 24 0 429 317 8 0 chr1 113156515 113156635 -129507718 + L1MDb LINE L1 11 131 -6278 5012 148 22 0 chr1 113156821 113157780 -129506573 + L1PA16 LINE L1 5187 6165 -1 269 89 22 0 chr1 113157782 113157827 -129506526 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 558 258 123 39 chr1 113157843 113158153 -129506200 + L1MDb LINE L1 811 1146 -5441 1116 280 29 37 chr1 113158161 113158358 -129505995 - MLT1B LTR MaLR -10 380 186 333 47 0 0 chr1 113158358 113158401 -129505952 + (TG)n Simple_repeat Simple_repeat 2 44 0 1116 280 29 37 chr1 113158401 113158585 -129505768 - MLT1B LTR MaLR -204 186 2 567 279 35 16 chr1 113158599 113158853 -129505500 + L1MDb LINE L1 1146 1404 -5183 338 149 35 26 chr1 113158891 113159005 -129505348 + (TA)n Simple_repeat Simple_repeat 1 115 0 255 238 38 0 chr1 113159013 113159093 -129505260 + L1MC4 LINE L1 6624 6706 -1336 * 257 258 22 11 chr1 113159047 113159136 -129505217 - L1MC4 LINE L1 -1339 6703 6614 324 291 26 8 chr1 113159195 113159602 -129504751 + L1MDb LINE L1 1431 1942 -4645 434 202 12 0 chr1 113159607 113159691 -129504662 + MER61E LTR ERV1 1 85 -484 228 143 179 18 chr1 113159889 113159945 -129504408 + MER51A LTR ERV1 216 280 -354 * 1115 226 80 23 chr1 113159916 113160266 -129504087 + LTR25 LTR ERV1 415 784 -10 449 216 65 20 chr1 113160375 113160528 -129503825 + L1MA10 LINE L1 6172 6331 -3 2122 120 0 0 chr1 113161019 113161326 -129503027 + AluSq SINE Alu 1 307 0 73 73 0 11 chr1 113161804 113161928 -129502425 + AT_rich Low_complexity Low_complexity 1 124 -53 5295 156 26 33 chr1 113161928 113163007 -129501346 + MER11C LTR ERVK 1 1071 0 73 73 0 11 chr1 113163007 113163061 -129501292 + AT_rich Low_complexity Low_complexity 124 177 0 750 229 33 33 chr1 113163230 113163412 -129500941 - MLT1C LTR MaLR 0 467 286 1514 261 29 90 chr1 113163412 113164011 -129500342 + LTR26 LTR ERV1 1 603 0 2177 83 0 48 chr1 113164020 113164332 -129500021 + AluY SINE Alu 1 297 -14 1027 216 80 4 chr1 113164343 113164593 -129499760 - MLT1C LTR MaLR -198 269 1 553 297 7 0 chr1 113164745 113164893 -129499460 - MIR SINE MIR -73 189 41 21 0 0 0 chr1 113166558 113166579 -129497774 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 113166672 113166695 -129497658 + (TATTG)n Simple_repeat Simple_repeat 5 27 0 21 36 0 0 chr1 113167301 113167329 -129497024 + AT_rich Low_complexity Low_complexity 1 28 0 287 359 100 6 chr1 113167499 113167669 -129496684 + MIR SINE MIR 53 238 -24 22 35 0 0 chr1 113168559 113168588 -129495765 + AT_rich Low_complexity Low_complexity 1 29 0 18021 57 4 3 chr1 113168720 113171865 -129492488 - L1PA5 LINE L1 -6 6148 3014 6304 55 2 1 chr1 113171865 113172672 -129491681 + L1PA5 LINE L1 2203 3010 -3136 1096 251 68 50 chr1 113172976 113173359 -129490994 - MLT1B LTR MaLR 0 390 1 1795 220 45 5 chr1 113173364 113173764 -129490589 - MLT1B-int LTR MaLR -6 1729 1314 263 253 24 24 chr1 113173907 113173990 -129490363 - MLT1B-int LTR MaLR -970 765 683 304 209 28 71 chr1 113174003 113174176 -129490177 - MLT1-int LTR MaLR -484 887 631 4244 219 41 52 chr1 113174197 113175544 -129488809 + L1MA6 LINE L1 2224 3555 -2591 252 0 0 0 chr1 113175546 113175574 -129488779 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7651 19 0 0 chr1 113175577 113176594 -129487759 - L1PA2 LINE L1 -5 6150 5132 4663 30 0 0 chr1 113176594 113177158 -129487195 + L1PA2 LINE L1 4569 5132 -1014 * 8061 185 43 18 chr1 113177157 113177283 -129487070 + L1MA6 LINE L1 3548 3669 -2631 357 24 0 0 chr1 113177283 113177325 -129487028 + (CA)n Simple_repeat Simple_repeat 2 43 0 8061 185 43 18 chr1 113177325 113177987 -129486366 + L1MA6 LINE L1 3669 4313 -1987 2106 129 0 0 chr1 113177987 113178281 -129486072 + AluSx SINE Alu 6 299 -13 8061 185 43 18 chr1 113178281 113179563 -129484790 + L1MA6 LINE L1 4313 5674 -626 1104 37 0 0 chr1 113179561 113179696 -129484657 - L1PA8 LINE L1 -186 5968 5834 * 1315 83 0 16 chr1 113179696 113179887 -129484466 + L1PA8 LINE L1 5981 6169 -3 2892 185 63 0 chr1 113179887 113180484 -129483869 + L1MA6 LINE L1 5657 6299 -1 265 304 61 0 chr1 113181569 113181684 -129482669 + L1M4 LINE L1 5240 5361 -785 2893 158 48 14 chr1 113181688 113182277 -129482076 + L1MA8 LINE L1 5657 6265 -26 1767 136 7 14 chr1 113182306 113182620 -129481733 - AluSq SINE Alu 0 318 7 774 339 55 23 chr1 113182803 113183290 -129481063 - ERVL LTR ERVL -2980 2784 2282 306 380 33 16 chr1 113183491 113183736 -129480617 - ERVL LTR ERVL -3728 2036 1788 21 0 0 0 chr1 113183803 113183824 -129480529 + AT_rich Low_complexity Low_complexity 1 21 0 614 295 44 18 chr1 113185146 113185373 -129478980 - MIR SINE MIR -1 261 29 1878 194 3 11 chr1 113187737 113188087 -129476266 + LTR32 LTR ERVL 15 361 -110 784 170 20 33 chr1 113188078 113188231 -129476122 + LTR32 LTR ERVL 321 471 0 * 1812 175 7 0 chr1 113189284 113189587 -129474766 + AluSp SINE Alu 1 305 -8 2054 329 110 24 chr1 113189846 113190348 -129474005 - L2 LINE L2 -61 3211 2754 1491 112 27 0 chr1 113190348 113190572 -129473781 + MER30 DNA MER1_type 1 230 0 2054 329 110 24 chr1 113190572 113191524 -129472829 - L2 LINE L2 -518 2754 1567 400 349 228 2 chr1 113191558 113191996 -129472357 + L2 LINE L2 2010 2546 -768 2148 242 87 11 chr1 113192017 113192624 -129471729 + MER82 DNA MER2_type 1 653 0 355 330 88 10 chr1 113192642 113192836 -129471517 + L2 LINE L2 3100 3308 -5 531 271 14 0 chr1 113193241 113193381 -129470972 - MER63 DNA MER1_type 0 1060 919 518 228 25 95 chr1 113193595 113193753 -129470600 + MER77 LTR ERV1 10 156 -449 1694 184 14 32 chr1 113194011 113194060 -129470293 + MLT2D LTR ERVL 1 49 -365 1877 199 11 6 chr1 113194060 113194421 -129469932 - MLT1A1 LTR MaLR -2 363 1 1694 184 14 32 chr1 113194421 113194741 -129469612 + MLT2D LTR ERVL 49 363 -51 211 244 0 0 chr1 113194754 113194799 -129469554 + (TA)n Simple_repeat Simple_repeat 1 45 0 271 169 0 51 chr1 113194800 113194816 -129469537 + MLT2D LTR ERVL 465 480 -40 342 0 0 0 chr1 113194816 113194854 -129469499 + (TG)n Simple_repeat Simple_repeat 2 39 0 271 169 0 51 chr1 113194854 113194896 -129469457 + MLT2D LTR ERVL 480 520 0 1990 272 28 46 chr1 113194949 113195619 -129468734 + MER21-int LTR ERV1 3479 4136 -55 817 251 15 20 chr1 113197109 113197312 -129467041 + MER77 LTR ERV1 404 605 0 226 233 38 15 chr1 113197483 113197616 -129466737 + (TCTCTG)n Simple_repeat Simple_repeat 2 137 0 3620 55 2 0 chr1 113198124 113198580 -129465773 - L1P LINE L1 -1158 4988 4532 7288 42 1 1 chr1 113198580 113199825 -129464528 + L1PA4 LINE L1 4930 6171 0 1719 150 84 39 chr1 113199903 113199975 -129464378 - THE1C LTR MaLR 0 375 308 1969 97 0 4 chr1 113199975 113200234 -129464119 + AluSc SINE Alu 39 296 -13 1719 150 84 39 chr1 113200234 113200520 -129463833 - THE1C LTR MaLR -67 308 1 1677 169 161 13 chr1 113200690 113201063 -129463290 - MSTA LTR MaLR 0 428 1 1665 186 21 3 chr1 113201064 113201391 -129462962 - MSTA-int LTR MaLR -1 1650 1318 350 173 0 12 chr1 113201555 113201636 -129462717 + (TA)n Simple_repeat Simple_repeat 1 80 0 286 326 11 0 chr1 113201603 113201698 -129462655 + Tigger7 DNA MER2_type 2375 2470 -17 * 393 22 0 0 chr1 113201698 113201744 -129462609 + (TA)n Simple_repeat Simple_repeat 2 47 0 369 43 0 0 chr1 113201762 113201809 -129462544 + (TG)n Simple_repeat Simple_repeat 2 48 0 1344 210 24 7 chr1 113202224 113202519 -129461834 - AluJo SINE Alu -12 300 1 2020 114 14 0 chr1 113202560 113202850 -129461503 - AluSg1 SINE Alu -10 299 6 21 36 0 0 chr1 113202857 113202885 -129461468 + AT_rich Low_complexity Low_complexity 1 28 0 324 247 0 0 chr1 113203002 113203075 -129461278 + L1MB3 LINE L1 4843 4915 -1231 2198 190 52 2 chr1 113203093 113203539 -129460814 + L1MB3 LINE L1 5672 6145 -38 2147 58 0 0 chr1 113203539 113203799 -129460554 - AluY SINE Alu -15 296 37 2198 190 52 2 chr1 113203799 113203837 -129460516 + L1MB3 LINE L1 6145 6180 -3 24 32 0 0 chr1 113205127 113205158 -129459195 + AT_rich Low_complexity Low_complexity 1 31 0 1684 147 59 25 chr1 113205470 113205790 -129458563 - MER44D DNA MER2_type 0 609 9 24 0 0 0 chr1 113206072 113206096 -129458257 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 113206585 113206606 -129457747 + AT_rich Low_complexity Low_complexity 1 21 0 1059 219 7 68 chr1 113206607 113206917 -129457436 - MLT1B LTR MaLR 0 390 100 * 6201 164 30 70 chr1 113206912 113208193 -129456160 - Tigger1 DNA MER2_type -6 2412 1182 2039 90 13 43 chr1 113208218 113208519 -129455834 - AluY SINE Alu -17 294 3 2127 174 17 36 chr1 113208519 113208939 -129455414 - Tigger1 DNA MER2_type -2005 413 2 536 173 19 29 chr1 113208941 113209045 -129455308 - MLT1B LTR MaLR -287 103 1 198 128 58 12 chr1 113209066 113209152 -129455201 + (TA)n Simple_repeat Simple_repeat 1 90 0 28 71 0 0 chr1 113209155 113209211 -129455142 + AT_rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr1 113209278 113209309 -129455044 + AT_rich Low_complexity Low_complexity 1 31 0 596 363 44 0 chr1 113210374 113210669 -129453684 + L2 LINE L2 2145 2452 -862 1121 232 94 56 chr1 113210931 113211379 -129452974 + MLT1C LTR MaLR 3 467 0 2221 285 78 17 chr1 113211381 113212090 -129452263 + MLT1C-int LTR MaLR 353 1104 -267 1789 167 85 18 chr1 113212090 113212432 -129451921 + MLT1A1 LTR MaLR 1 365 0 594 253 20 40 chr1 113212432 113212630 -129451723 + MLT1C-int LTR MaLR 1100 1293 -78 377 252 19 10 chr1 113212604 113212707 -129451646 + MLT1C-int LTR MaLR 1239 1342 -29 * 1872 227 24 9 chr1 113212784 113213243 -129451110 + MLT1C LTR MaLR 2 467 0 1229 239 91 24 chr1 113213244 113213617 -129450736 + MLT1C LTR MaLR 70 467 0 697 339 65 25 chr1 113213617 113214018 -129450335 + L2 LINE L2 2819 3235 -78 203 271 224 0 chr1 113214160 113214245 -129450108 + MIR SINE MIR 156 259 -3 265 310 86 26 chr1 113214245 113214361 -129449992 + L2 LINE L2 3187 3309 -4 446 378 99 16 chr1 113214428 113214862 -129449491 - L2 LINE L2 -561 2753 2284 1966 142 0 0 chr1 113214875 113215149 -129449204 + AluSx SINE Alu 16 289 -23 351 203 0 0 chr1 113215150 113215224 -129449129 + GA-rich Low_complexity Low_complexity 1 74 0 249 313 10 20 chr1 113215226 113215325 -129449028 - L2 LINE L2 -1026 2288 2191 22 0 0 0 chr1 113216550 113216572 -129447781 + AT_rich Low_complexity Low_complexity 1 22 0 300 53 0 0 chr1 113217267 113217305 -129447048 + (A)n Simple_repeat Simple_repeat 1 38 0 227 161 0 36 chr1 113217622 113217678 -129446675 + T-rich Low_complexity Low_complexity 1 54 0 1056 295 89 33 chr1 113217779 113218477 -129445876 + HAL1 LINE L1 1210 1946 -561 4199 190 97 18 chr1 113218634 113219330 -129445023 - L1MC3 LINE L1 -1 7784 6984 255 79 0 0 chr1 113219330 113219368 -129444985 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 4199 190 97 18 chr1 113219368 113219670 -129444683 - L1MC3 LINE L1 -801 6984 6707 255 348 79 0 chr1 113220611 113220700 -129443653 - L2 LINE L2 -26 3246 3151 22 56 0 0 chr1 113221773 113221809 -129442544 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr1 113221951 113221984 -129442369 + AT_rich Low_complexity Low_complexity 1 33 0 1041 271 88 45 chr1 113222103 113222546 -129441807 + MLT1C LTR MaLR 6 467 0 22 0 0 0 chr1 113222684 113222706 -129441647 + AT_rich Low_complexity Low_complexity 1 22 0 469 153 71 0 chr1 113222888 113222973 -129441380 - L1PA8A LINE L1 -9 6122 6032 296 53 0 0 chr1 113222973 113223011 -129441342 + L1PA6 LINE L1 5947 5984 -170 2187 88 3 3 chr1 113223328 113223655 -129440698 + AluSp SINE Alu 1 327 0 186 308 15 0 chr1 113223667 113223732 -129440621 + MIR SINE MIR 88 153 -109 21 0 0 0 chr1 113223749 113223770 -129440583 + AT_rich Low_complexity Low_complexity 1 21 0 239 244 142 31 chr1 113224450 113224577 -129439776 + MLT1D LTR MaLR 90 230 -275 754 291 75 8 chr1 113225766 113226007 -129438346 - MIR SINE MIR 0 262 6 189 211 0 0 chr1 113227499 113227556 -129436797 + GA-rich Low_complexity Low_complexity 3 59 0 328 261 92 92 chr1 113227918 113228113 -129436240 + HAL1 LINE L1 3 197 -2310 225 0 0 0 chr1 113228661 113228686 -129435667 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3483 235 22 10 chr1 113228711 113228769 -129435584 + L1P LINE L1 1038 1094 -5052 4620 106 3 34 chr1 113228769 113229479 -129434874 + LTR12 LTR ERV1 1 688 0 3483 235 22 10 chr1 113229479 113231705 -129432648 + L1P LINE L1 1094 3383 -2763 269 174 0 0 chr1 113231699 113231745 -129432608 + L1MC3 LINE L1 7056 7101 -684 * 217 307 57 0 chr1 113231800 113231888 -129432465 + L2 LINE L2 3117 3209 -104 1875 350 8 7 chr1 113232313 113232927 -129431426 + L1PA13 LINE L1 53 667 -6172 5071 242 29 19 chr1 113233207 113234558 -129429795 + L1PA13 LINE L1 1668 3031 -3818 2293 89 0 19 chr1 113234558 113234872 -129429481 + AluY SINE Alu 2 309 -2 5071 242 29 19 chr1 113234872 113235541 -129428812 + L1PA13 LINE L1 3031 3692 -3157 19585 200 28 19 chr1 113235562 113235943 -129428410 - L1PA12 LINE L1 -15 7591 7215 2259 84 10 3 chr1 113235943 113236242 -129428111 - AluY SINE Alu -10 301 1 19585 200 28 19 chr1 113236242 113241368 -129422985 - L1PA12 LINE L1 -391 7215 1221 22 0 0 0 chr1 113241635 113241657 -129422696 + AT_rich Low_complexity Low_complexity 1 22 0 2007 144 20 44 chr1 113242227 113242617 -129421736 + Tigger2a DNA MER2_type 1 381 -53 3808 14 0 0 chr1 113242627 113243061 -129421292 - L1PA3 LINE L1 -4 6151 5718 198 0 0 0 chr1 113243066 113243088 -129421265 + (T)n Simple_repeat Simple_repeat 1 22 0 315 279 0 15 chr1 113243174 113243242 -129421111 + Tigger2a DNA MER2_type 378 444 0 3861 176 6 53 chr1 113244063 113244320 -129420033 - L1MA7 LINE L1 0 6291 6023 1464 182 64 14 chr1 113244320 113244600 -129419753 - AluJb SINE Alu -16 296 3 3861 176 6 53 chr1 113244600 113245188 -129419165 - L1MA7 LINE L1 -268 6023 5486 295 330 67 19 chr1 113245190 113245399 -129418954 + L2 LINE L2 2148 2366 -948 336 85 0 0 chr1 113245648 113245695 -129418658 + MADE1 DNA Mariner 1 47 -33 1904 197 34 7 chr1 113246234 113246650 -129417703 - MER95 LTR ERV 0 431 5 330 273 39 0 chr1 113247179 113247256 -129417097 + L2 LINE L2 3230 3309 -4 689 280 47 14 chr1 113247338 113247549 -129416804 - MIR SINE MIR -38 224 7 2506 221 29 57 chr1 113247940 113248555 -129415798 - ERVL LTR ERVL -2949 607 10 848 244 13 7 chr1 113248778 113249077 -129415276 - AluYa5 SINE Alu 0 301 1 966 148 0 0 chr1 113249485 113249661 -129414692 + (TA)n Simple_repeat Simple_repeat 1 176 0 1002 157 95 19 chr1 113249661 113249871 -129414482 - MER44D DNA MER2_type -112 497 2 296 179 37 6 chr1 113249933 113250095 -129414258 + (TA)n Simple_repeat Simple_repeat 1 167 0 2805 10 0 0 chr1 113250596 113250907 -129413446 - AluYa5 SINE Alu 0 311 1 277 348 9 0 chr1 113251426 113251538 -129412815 + MIR SINE MIR 38 150 -58 607 299 94 38 chr1 113252166 113252454 -129411899 + L2 LINE L2 3008 3311 -2 23 68 0 0 chr1 113253274 113253318 -129411035 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr1 113253483 113253523 -129410830 + AT_rich Low_complexity Low_complexity 1 40 0 234 0 0 0 chr1 113253916 113253942 -129410411 + (TG)n Simple_repeat Simple_repeat 1 26 0 194 182 36 0 chr1 113253962 113254017 -129410336 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 21 0 0 0 chr1 113254018 113254039 -129410314 + AT_rich Low_complexity Low_complexity 1 21 0 222 118 0 0 chr1 113254343 113254377 -129409976 + (TG)n Simple_repeat Simple_repeat 2 35 0 258 339 71 29 chr1 113255225 113255464 -129408889 - ERVL LTR ERVL -853 4911 4663 535 316 107 17 chr1 113255700 113255934 -129408419 - ERVL LTR ERVL -1329 4325 4071 227 270 132 35 chr1 113257217 113257506 -129406847 - L1M4 LINE L1 -1453 4693 4377 265 250 112 26 chr1 113257579 113257695 -129406658 - L1M4 LINE L1 -1921 4225 4100 403 308 122 19 chr1 113257844 113258058 -129406295 - MIR SINE MIR -24 238 3 2231 60 0 7 chr1 113258073 113258393 -129405960 + AluY SINE Alu 1 318 0 484 214 29 0 chr1 113258480 113258620 -129405733 + CT-rich Low_complexity Low_complexity 3 146 0 267 290 19 56 chr1 113259539 113259646 -129404707 + MIR SINE MIR 48 150 -112 420 212 25 76 chr1 113259989 113260107 -129404246 + MIR SINE MIR 78 189 -73 318 26 0 0 chr1 113260297 113260336 -129404017 + (TG)n Simple_repeat Simple_repeat 2 40 0 5764 211 50 17 chr1 113260343 113261616 -129402737 - L1MA4 LINE L1 -1 6299 4928 2545 45 3 6 chr1 113261616 113261927 -129402426 - AluY SINE Alu -1 310 1 5764 211 50 17 chr1 113261927 113262612 -129401741 - L1MA4 LINE L1 -1372 4928 4267 8456 31 1 1 chr1 113262740 113264538 -129399815 + L1PA3 LINE L1 4352 6153 -2 1756 199 98 63 chr1 113266210 113266733 -129397620 + LTR55 LTR ERV 1 541 -7 1554 274 30 36 chr1 113266739 113267483 -129396870 + L1M4 LINE L1 2293 3031 -3115 568 314 137 11 chr1 113267513 113267899 -129396454 + L2 LINE L2 2656 3085 -228 400 326 57 78 chr1 113267935 113268266 -129396087 - MLT1J1 LTR MaLR -47 399 76 194 225 0 70 chr1 113268408 113268479 -129395874 + L2 LINE L2 3167 3232 -81 2319 60 7 7 chr1 113269488 113269789 -129394564 + AluY SINE Alu 1 301 -10 58 47 0 0 chr1 113269866 113269952 -129394401 + AT_rich Low_complexity Low_complexity 1 86 0 6067 155 41 45 chr1 113270095 113271246 -129393107 - MSTA-int LTR MaLR -432 1148 3 1550 169 177 16 chr1 113271248 113271615 -129392738 - MSTA LTR MaLR 0 428 3 503 248 0 9 chr1 113272253 113272358 -129391995 - LTR16A LTR ERVL -6 444 341 249 220 34 0 chr1 113272476 113272535 -129391818 - LTR16A1 LTR ERVL -225 232 172 1078 176 0 0 chr1 113272564 113272729 -129391624 + AluSg/x SINE Alu 126 290 -22 2019 270 26 19 chr1 113272774 113273351 -129391002 + MER92B LTR ERV1 2 582 -54 27 73 0 0 chr1 113273779 113273834 -129390519 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr1 113273888 113273917 -129390436 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr1 113274107 113274148 -129390205 + AT_rich Low_complexity Low_complexity 1 41 0 1860 207 33 20 chr1 113274208 113274238 -129390115 - MSTD LTR MaLR 0 396 368 1860 143 113 38 chr1 113274238 113274636 -129389717 - MSTA LTR MaLR 0 428 1 1860 207 33 20 chr1 113274636 113274996 -129389357 - MSTD LTR MaLR -28 368 1 21 57 0 0 chr1 113275096 113275131 -129389222 + AT_rich Low_complexity Low_complexity 1 35 0 2828 6 0 0 chr1 113275313 113275624 -129388729 - AluYa5 SINE Alu 0 311 1 37 0 0 0 chr1 113275643 113275680 -129388673 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 113277229 113277264 -129387089 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr1 113277274 113277312 -129387041 + AT_rich Low_complexity Low_complexity 1 38 0 1233 205 175 0 chr1 113277983 113278320 -129386033 - MSTD LTR MaLR 0 396 1 5008 253 114 37 chr1 113278320 113279931 -129384422 - MSTD-int LTR MaLR 0 1735 2 1228 245 130 14 chr1 113279933 113280288 -129384065 - MSTD LTR MaLR 0 396 1 24 67 0 0 chr1 113281331 113281376 -129382977 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr1 113282471 113282506 -129381847 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr1 113282545 113282578 -129381775 + AT_rich Low_complexity Low_complexity 1 33 0 668 330 60 21 chr1 113282774 113283107 -129381246 - L2 LINE L2 0 3313 2968 1939 183 8 19 chr1 113283199 113283566 -129380787 - THE1B LTR MaLR 0 364 2 4475 233 46 74 chr1 113283567 113284449 -129379904 - THE1B-int LTR MaLR 0 1651 839 6576 78 24 0 chr1 113284449 113285531 -129378822 - L1PA7 LINE L1 -1 6153 5064 4475 233 46 74 chr1 113285531 113286342 -129378011 - THE1B-int LTR MaLR -812 839 6 2143 147 11 19 chr1 113286347 113286714 -129377639 - THE1B LTR MaLR 0 364 1 233 302 0 0 chr1 113286714 113286777 -129377576 - L2 LINE L2 -657 2657 2595 640 218 20 2 chr1 113286777 113286937 -129377416 + LTR1B LTR ERV1 1 159 -626 1491 84 37 9 chr1 113286937 113287152 -129377201 + MER11A LTR ERVK 1 221 -1045 4278 96 42 3 chr1 113287152 113287765 -129376588 + MER11A LTR ERVK 630 1266 0 1176 225 105 98 chr1 113287765 113288364 -129375989 + LTR1B LTR ERV1 144 746 -80 1967 336 72 32 chr1 113288486 113289369 -129374984 - L2 LINE L2 -715 2599 1658 1966 139 13 0 chr1 113289369 113289672 -129374681 - AluY SINE Alu -4 307 1 1967 336 72 32 chr1 113289672 113289927 -129374426 - L2 LINE L2 -1656 1658 1415 378 211 74 0 chr1 113289935 113290030 -129374323 - L1MB5 LINE L1 -9 6165 6064 2306 112 30 6 chr1 113290091 113290430 -129373923 - MLT2A2 LTR ERVL -106 347 1 5269 72 34 0 chr1 113290430 113291135 -129373218 - HERVL-A2 LTR ERVL 0 5654 4926 2977 264 57 3 chr1 113291154 113292130 -129372223 - L1M4 LINE L1 -1144 5500 4472 325 283 10 0 chr1 113292139 113292238 -129372115 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 306 273 0 0 chr1 113292239 113292327 -129372026 + L1MC4 LINE L1 6613 6700 -1342 2619 267 85 31 chr1 113292402 113294016 -129370337 - L1M4 LINE L1 -4747 1899 174 905 294 58 78 chr1 113294142 113294709 -129369644 - L2 LINE L2 -1942 1372 817 186 405 150 20 chr1 113294764 113295011 -129369342 + L2 LINE L2 2829 3107 -206 11885 173 47 17 chr1 113295063 113296234 -129368119 + Tigger1 DNA MER2_type 1 1135 -1283 1987 33 4 0 chr1 113296234 113296474 -129367879 + L1PA4 LINE L1 5911 6151 -4 11885 173 47 17 chr1 113296474 113296819 -129367534 + Tigger1 DNA MER2_type 1135 1468 -950 1828 138 45 7 chr1 113296819 113297109 -129367244 + AluSx SINE Alu 1 301 -11 11885 173 47 17 chr1 113297109 113297934 -129366419 + Tigger1 DNA MER2_type 1468 2414 -4 21 0 0 0 chr1 113298306 113298327 -129366026 + AT_rich Low_complexity Low_complexity 1 21 0 245 309 0 31 chr1 113299509 113299606 -129364747 + HAL1 LINE L1 1 94 -2413 290 241 0 74 chr1 113300125 113300233 -129364120 + L1MC4 LINE L1 6610 6709 -1333 547 283 123 58 chr1 113300249 113300865 -129363488 + HAL1 LINE L1 1110 1765 -742 1131 283 61 23 chr1 113301781 113302342 -129362011 + L1ME3A LINE L1 5474 6053 -117 28 61 0 0 chr1 113302702 113302751 -129361602 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr1 113304515 113304544 -129359809 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 113304555 113304578 -129359775 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 113305367 113305389 -129358964 + AT_rich Low_complexity Low_complexity 1 22 0 225 359 0 26 chr1 113305483 113305561 -129358792 - MER5A DNA MER1_type -35 154 79 649 272 163 26 chr1 113305615 113306068 -129358285 + MLT1H LTR MaLR 1 541 -14 29 28 0 0 chr1 113308499 113308535 -129355818 + AT_rich Low_complexity Low_complexity 1 36 0 1309 175 45 22 chr1 113309564 113309874 -129354479 - AluJb SINE Alu 0 326 11 330 317 49 49 chr1 113310248 113310412 -129353941 + MIR3 SINE MIR 42 205 -3 2110 146 28 0 chr1 113310756 113311328 -129353025 - LTR25 LTR ERV1 0 794 141 1442 143 0 0 chr1 113311716 113311933 -129352420 - AluSg/x SINE Alu -3 307 91 286 368 43 31 chr1 113311974 113312300 -129352053 - MLT1J LTR MaLR -34 477 148 30 0 0 0 chr1 113312574 113312604 -129351749 + AT_rich Low_complexity Low_complexity 1 30 0 1858 143 32 27 chr1 113314583 113314955 -129349398 - THE1C LTR MaLR 0 375 2 2837 6 0 0 chr1 113315281 113315592 -129348761 + AluY SINE Alu 1 311 0 8756 85 11 3 chr1 113316404 113318372 -129345981 - L1PA7 LINE L1 -20 6134 4150 1636 204 28 84 chr1 113318390 113318925 -129345428 - MLT1D LTR MaLR 0 505 1 266 269 0 87 chr1 113320424 113320528 -129343825 - L2 LINE L2 0 3313 3219 1803 324 67 51 chr1 113320889 113321527 -129342826 - L2 LINE L2 -2175 1139 474 3869 134 16 2 chr1 113321527 113322153 -129342200 + MER41B LTR ERV1 1 635 0 1803 324 67 51 chr1 113322153 113322635 -129341718 - L2 LINE L2 -2840 474 1 27 49 0 0 chr1 113322876 113322917 -129341436 + AT_rich Low_complexity Low_complexity 1 41 0 293 321 0 0 chr1 113322976 113323060 -129341293 + MER34 LTR ERV1 1 84 -458 563 244 81 53 chr1 113323071 113323493 -129340860 + LTR48 LTR ERV1 164 755 -32 1541 239 80 48 chr1 113323529 113324516 -129339837 + L1ME2 LINE L1 5092 6150 -14 313 316 39 32 chr1 113324797 113324878 -129339475 + L1MC/D LINE L1 5637 5721 -2087 2073 142 0 0 chr1 113324878 113325189 -129339164 + AluSx SINE Alu 1 311 -1 313 316 39 32 chr1 113325189 113325262 -129339091 + L1MC/D LINE L1 5721 5792 -2016 5228 114 82 109 chr1 113325348 113326928 -129337425 - pTR5 LTR ERV1 0 2438 744 540 233 15 91 chr1 113326928 113327290 -129337063 + LTR28 LTR ERV1 3 427 -209 2046 96 3 72 chr1 113327291 113327626 -129336727 + AluSx SINE Alu 1 312 0 604 275 0 0 chr1 113328019 113328179 -129336174 + MER52A LTR ERV1 1593 1752 -3 36 0 0 0 chr1 113328324 113328360 -129335993 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr1 113329092 113329123 -129335230 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 113330313 113330334 -129334019 + AT_rich Low_complexity Low_complexity 1 21 0 251 355 100 25 chr1 113330470 113330670 -129333683 - MIR SINE MIR -17 245 31 659 253 119 60 chr1 113331022 113331302 -129333051 - MER93b LTR ERV1 0 373 66 2324 53 0 7 chr1 113331302 113331601 -129332752 - AluY SINE Alu -13 298 2 659 253 119 60 chr1 113331601 113331672 -129332681 - MER93b LTR ERV1 -307 66 1 702 283 42 11 chr1 113331680 113331871 -129332482 + MLT1H1 LTR MaLR 289 485 -70 23 54 0 0 chr1 113332621 113332658 -129331695 + AT_rich Low_complexity Low_complexity 1 37 0 481 260 25 51 chr1 113333905 113334101 -129330252 + L2 LINE L2 2217 2407 -907 425 336 82 18 chr1 113334496 113334716 -129329637 + MIR SINE MIR 11 244 -18 21 36 0 0 chr1 113334734 113334762 -129329591 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr1 113335901 113335936 -129328417 + (CAT)n Simple_repeat Simple_repeat 2 36 0 771 208 82 36 chr1 113336298 113336515 -129327838 + MER33 DNA MER1_type 4 240 -2345 1985 68 0 0 chr1 113336515 113336766 -129327587 + AluY SINE Alu 44 294 -17 771 208 82 36 chr1 113336766 113336851 -129327502 + MER33 DNA MER1_type 240 320 -4 361 300 115 78 chr1 113337689 113337848 -129326505 - MIR SINE MIR 0 262 89 1822 130 56 3 chr1 113337848 113338132 -129326221 + AluSg SINE Alu 1 299 -11 361 300 115 78 chr1 113338132 113338215 -129326138 - MIR SINE MIR -173 89 11 25 0 0 0 chr1 113339063 113339088 -129325265 + AT_rich Low_complexity Low_complexity 1 25 0 439 250 70 29 chr1 113340095 113340267 -129324086 - L1ME LINE L1 -594 5570 5392 396 0 0 0 chr1 113340487 113340531 -129323822 + (TA)n Simple_repeat Simple_repeat 1 44 0 362 290 24 48 chr1 113340597 113340804 -129323549 - L1ME LINE L1 -1135 5011 4810 25 51 0 0 chr1 113341166 113341205 -129323148 + AT_rich Low_complexity Low_complexity 1 39 0 1814 174 0 0 chr1 113341468 113341762 -129322591 - AluJb SINE Alu -12 300 7 405 293 22 66 chr1 113341971 113342152 -129322201 + MER5B DNA MER1_type 5 177 -1 346 113 19 0 chr1 113342818 113342871 -129321482 + L1 LINE L1 4900 4953 -1193 343 305 79 35 chr1 113342947 113343150 -129321203 + MER92B LTR ERV1 418 629 -7 924 139 14 112 chr1 113343332 113343555 -129320798 + MER67D LTR ERV1 1 201 -313 1463 98 0 5 chr1 113343628 113343833 -129320520 - AluY SINE Alu -2 309 106 242 262 143 0 chr1 113344545 113344629 -129319724 + MIR SINE MIR 48 143 -119 656 281 162 15 chr1 113344920 113345254 -129319099 - MLT1J1 LTR MaLR 0 446 64 180 0 0 0 chr1 113347758 113347778 -129316575 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 962 263 130 20 chr1 113347780 113347976 -129316377 - L2 LINE L2 -13 3300 3127 1977 175 103 0 chr1 113347976 113348364 -129315989 - MSTA LTR MaLR 0 428 1 962 263 130 20 chr1 113348364 113348558 -129315795 - L2 LINE L2 -186 3127 2867 239 174 159 29 chr1 113348571 113348640 -129315713 + MER53 DNA DNA 85 162 -27 2149 109 3 0 chr1 113348731 113349033 -129315320 + AluSc SINE Alu 1 303 -6 22 35 0 0 chr1 113349071 113349100 -129315253 + AT_rich Low_complexity Low_complexity 1 29 0 306 358 58 40 chr1 113350497 113350619 -129313734 + L1MC4 LINE L1 5420 5547 -2261 2185 172 47 2 chr1 113350619 113351027 -129313326 + MSTB LTR MaLR 1 426 0 306 358 58 40 chr1 113351027 113351077 -129313276 + L1MC4 LINE L1 5547 5595 -2213 427 267 63 36 chr1 113351432 113351653 -129312700 + L1ME3A LINE L1 3933 4159 -1987 383 257 49 7 chr1 113351661 113351805 -129312548 + L1ME3A LINE L1 4471 4620 -1526 306 307 23 0 chr1 113351819 113351907 -129312446 - L1MC4 LINE L1 -1339 6703 6614 * 355 289 0 0 chr1 113351855 113351945 -129312408 + L1MC4 LINE L1 6614 6703 -1339 475 331 171 9 chr1 113352054 113352580 -129311773 + L1ME3A LINE L1 4752 5362 -784 1686 253 56 34 chr1 113353031 113353291 -129311062 + L1ME3A LINE L1 5409 5662 -508 2173 111 57 23 chr1 113353291 113353642 -129310711 + THE1B LTR MaLR 1 363 -1 1686 253 56 34 chr1 113353642 113354119 -129310234 + L1ME3A LINE L1 5662 6162 -8 2043 178 21 3 chr1 113354637 113355020 -129309333 - L1MA9 LINE L1 -368 5944 5555 277 154 0 31 chr1 113355024 113355089 -129309264 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 553 249 12 41 chr1 113355835 113356004 -129308349 + L1ME1 LINE L1 5836 5999 -167 4580 88 141 41 chr1 113356008 113356759 -129307594 - LTR12 LTR ERV1 0 826 1 4169 119 8 0 chr1 113356759 113357365 -129306988 - HERV9 LTR ERV1 0 8399 7789 377 131 0 0 chr1 113357361 113357422 -129306931 - HERV9 LTR ERV1 -835 7564 7504 * 572 187 30 35 chr1 113357423 113357796 -129306557 - HERV17 LTR ERV1 -5757 1139 703 * 6239 93 11 8 chr1 113357789 113358661 -129305692 - HERV17 LTR ERV1 -3445 4954 4080 21319 107 14 9 chr1 113358668 113361789 -129302564 - HERV17 LTR ERV1 -5260 3139 1 1572 82 16 13 chr1 113361797 113362022 -129302331 - LTR12 LTR ERV1 -28 686 361 237 240 27 27 chr1 113362074 113362149 -129302204 + L1M4 LINE L1 4548 4622 -1524 21 0 0 0 chr1 113364303 113364324 -129300029 + AT_rich Low_complexity Low_complexity 1 21 0 7389 39 1 1 chr1 113364556 113365466 -129298887 - L1PA3 LINE L1 -1100 5046 4137 7290 36 0 2 chr1 113365465 113366595 -129297758 + L1PA3 LINE L1 5054 6182 0 * 2059 123 10 0 chr1 113367306 113367614 -129296739 - AluSq SINE Alu -2 311 1 1467 155 28 8 chr1 113367674 113367926 -129296427 - MER7C DNA MER2_type -3 599 343 2197 190 22 78 chr1 113367928 113368506 -129295847 - MLT2B3 LTR ERVL -8 546 1 1107 184 37 9 chr1 113368506 113368723 -129295630 - MER7C DNA MER2_type -353 249 27 37 23 0 0 chr1 113369391 113369435 -129294918 + AT_rich Low_complexity Low_complexity 1 44 0 4918 179 40 8 chr1 113370053 113371036 -129293317 - L1PA13 LINE L1 -973 5173 4160 6033 104 12 5 chr1 113371038 113372002 -129292351 + L1PA13 LINE L1 5189 6163 0 228 280 230 30 chr1 113372282 113372382 -129291971 + MIR SINE MIR 3 122 -140 22 70 0 0 chr1 113372397 113372440 -129291913 + AT_rich Low_complexity Low_complexity 1 43 0 211 188 16 16 chr1 113373299 113373363 -129290990 + CT-rich Low_complexity Low_complexity 2 65 0 26 30 0 0 chr1 113374057 113374090 -129290263 + AT_rich Low_complexity Low_complexity 1 33 0 2726 25 0 0 chr1 113374090 113374408 -129289945 - L1PA3 LINE L1 -3 6152 5835 1842 173 10 0 chr1 113374782 113375077 -129289276 + AluSx SINE Alu 1 298 -14 1635 197 7 0 chr1 113375423 113375718 -129288635 + AluJb SINE Alu 1 297 -15 334 333 39 26 chr1 113375722 113375953 -129288400 + L1MEc LINE L1 898 1131 -5476 416 288 94 90 chr1 113376064 113376421 -129287932 + L1MEc LINE L1 1136 1557 -4869 310 287 37 0 chr1 113376481 113376649 -129287704 + L1M4 LINE L1 1543 2151 -4276 1547 251 76 5 chr1 113376869 113377463 -129286890 + L1M4 LINE L1 2521 3156 -3270 1105 247 82 80 chr1 113377480 113378336 -129286017 + L1M4 LINE L1 4838 5699 -784 398 313 18 0 chr1 113378820 113378932 -129285421 + MER81 DNA DNA 1 114 0 312 283 34 76 chr1 113379845 113380082 -129284271 - MIR SINE MIR -13 249 23 225 145 0 116 chr1 113380357 113380426 -129283927 - L1MC4 LINE L1 -1334 6708 6648 265 277 0 0 chr1 113380460 113380543 -129283810 - L1MC4 LINE L1 -1346 6696 6614 226 194 0 0 chr1 113380544 113380580 -129283773 + (TG)n Simple_repeat Simple_repeat 1 36 0 304 340 94 13 chr1 113380798 113380957 -129283396 + MIR SINE MIR 18 189 -73 213 121 0 0 chr1 113380961 113380994 -129283359 + (CA)n Simple_repeat Simple_repeat 2 34 0 246 32 0 0 chr1 113381017 113381048 -129283305 + (TG)n Simple_repeat Simple_repeat 1 31 0 363 324 29 10 chr1 113381491 113381593 -129282760 - MIR SINE MIR -136 126 23 29 28 0 0 chr1 113381644 113381680 -129282673 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 113382002 113382032 -129282321 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr1 113382090 113382136 -129282217 + AT_rich Low_complexity Low_complexity 1 46 0 2193 96 3 3 chr1 113382580 113382872 -129281481 + AluSx SINE Alu 1 292 -20 450 0 0 0 chr1 113383877 113383927 -129280426 + (GA)n Simple_repeat Simple_repeat 1 50 0 1337 217 71 25 chr1 113384384 113384790 -129279563 - L1ME1 LINE L1 -4 6162 5738 1146 251 33 116 chr1 113384793 113385558 -129278795 - L1ME1 LINE L1 -1777 4369 3677 485 217 117 17 chr1 113385558 113385678 -129278675 - FLAM_A SINE Alu -1 132 1 1146 251 33 116 chr1 113385678 113385740 -129278613 - L1ME1 LINE L1 -2469 3677 3611 561 181 0 14 chr1 113385764 113385986 -129278367 + (TA)n Simple_repeat Simple_repeat 1 218 0 22 35 0 0 chr1 113386299 113386328 -129278025 + AT_rich Low_complexity Low_complexity 1 29 0 1624 192 0 3 chr1 113388132 113388423 -129275930 + AluJo SINE Alu 1 290 -22 419 293 164 21 chr1 113388833 113389120 -129275233 + L2 LINE L2 2027 2354 -960 21 0 0 0 chr1 113390082 113390103 -129274250 + AT_rich Low_complexity Low_complexity 1 21 0 227 324 0 0 chr1 113390158 113390226 -129274127 - L2 LINE L2 -1 3312 3245 1303 180 25 123 chr1 113390635 113391040 -129273313 + MLT1A1 LTR MaLR 1 365 0 463 322 110 23 chr1 113392102 113392447 -129271906 - L2 LINE L2 -575 2739 2365 192 320 0 0 chr1 113392739 113392789 -129271564 + L2 LINE L2 1944 1993 -1321 183 216 39 39 chr1 113392992 113393043 -129271310 - L2 LINE L2 -1524 1790 1740 386 255 20 10 chr1 113393734 113393836 -129270517 - MIR SINE MIR -71 191 89 284 329 107 27 chr1 113394551 113394700 -129269653 - MIR SINE MIR -4 258 98 26 30 0 0 chr1 113395209 113395242 -129269111 + AT_rich Low_complexity Low_complexity 1 33 0 282 73 0 0 chr1 113395893 113395934 -129268419 + (CA)n Simple_repeat Simple_repeat 1 41 0 1757 166 3 0 chr1 113396216 113396544 -129267809 + AluSx SINE Alu 1 329 0 24 53 0 0 chr1 113396881 113396919 -129267434 + AT_rich Low_complexity Low_complexity 1 38 0 1278 118 28 24 chr1 113399581 113399792 -129264561 - THE1B LTR MaLR -152 212 1 8603 128 116 0 chr1 113399792 113401208 -129263145 - THE1B-int LTR MaLR 0 1580 1 1714 176 30 46 chr1 113401208 113401578 -129262775 - THE1B LTR MaLR 0 364 1 31 44 0 0 chr1 113402129 113402174 -129262179 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr1 113403051 113403084 -129261269 + AT_rich Low_complexity Low_complexity 1 33 0 190 273 0 61 chr1 113403263 113403329 -129261024 + L3 LINE CR1 356 417 -1160 315 256 12 0 chr1 113403862 113403944 -129260409 - LTR33 LTR ERVL -2 519 437 1771 168 12 30 chr1 113404005 113404333 -129260020 + MLT1B LTR MaLR 38 359 -31 723 317 29 52 chr1 113404363 113404669 -129259684 - LTR33 LTR ERVL -220 301 3 239 218 90 105 chr1 113404905 113405038 -129259315 + MLT1J LTR MaLR 237 367 -144 946 283 112 34 chr1 113405123 113405359 -129258994 + MER34 LTR ERV1 1 217 -325 433 72 0 196 chr1 113405359 113405456 -129258897 - MADE1 DNA Mariner -2 78 1 946 283 112 34 chr1 113405456 113405720 -129258633 + MER34 LTR ERV1 217 540 -2 1400 187 66 0 chr1 113405811 113406068 -129258285 - AluJo SINE Alu -2 310 37 216 290 113 48 chr1 113406161 113406285 -129258068 + MIR SINE MIR 81 212 -50 393 157 8 37 chr1 113406386 113406486 -129257867 - L1MC5 LINE L1 0 8042 7831 242 150 0 0 chr1 113406747 113406787 -129257566 - L1MC4 LINE L1 -1656 6386 6347 * 387 185 13 0 chr1 113406778 113406872 -129257481 - L1ME2 LINE L1 0 6166 6072 1959 147 0 3 chr1 113407094 113407394 -129256959 - AluSx SINE Alu -13 299 1 31 0 0 0 chr1 113407441 113407472 -129256881 + AT_rich Low_complexity Low_complexity 1 31 0 1253 162 31 4 chr1 113408712 113408940 -129255413 + L1M3 LINE L1 5572 5805 -363 520 200 0 0 chr1 113409230 113409325 -129255028 - L1MC1 LINE L1 -14 6319 6225 1105 209 37 12 chr1 113409334 113409619 -129254734 + MLT1A1 LTR MaLR 10 365 0 1693 208 3 6 chr1 113409619 113409951 -129254402 - L1MC1 LINE L1 -104 6229 5899 1240 246 63 26 chr1 113409951 113410333 -129254020 + MSTD LTR MaLR 1 396 0 3799 246 34 28 chr1 113410335 113411320 -129253033 + MSTD-int LTR MaLR 2 991 -744 1743 268 112 52 chr1 113411320 113412026 -129252327 + MER21B LTR ERV1 54 801 -62 891 205 147 61 chr1 113412060 113412387 -129251966 + MER31B LTR ERV1 104 458 -8 598 236 5 130 chr1 113412391 113412729 -129251624 - L1MC2 LINE L1 -209 5957 5677 450 265 138 31 chr1 113412736 113412825 -129251528 + LTR8 LTR ERV1 1 79 -612 288 0 0 0 chr1 113412825 113412857 -129251496 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 450 265 138 31 chr1 113412857 113412963 -129251390 + LTR8 LTR ERV1 79 217 -474 869 264 97 58 chr1 113413041 113413515 -129250838 + LTR8A LTR ERV1 107 727 0 1334 251 43 57 chr1 113413517 113414164 -129250189 - L1MC2 LINE L1 -514 5652 5008 1925 121 26 0 chr1 113414164 113414465 -129249888 - AluSx SINE Alu 0 312 5 1334 251 43 57 chr1 113414465 113414530 -129249823 - L1MC2 LINE L1 -1158 5008 4944 819 236 91 84 chr1 113414539 113415077 -129249276 - MER34 LTR ERV1 0 542 1 231 61 0 0 chr1 113415996 113416029 -129248324 + (CA)n Simple_repeat Simple_repeat 2 34 0 258 261 100 0 chr1 113417029 113417138 -129247215 + MIR3 SINE MIR 68 187 -21 21 57 0 0 chr1 113417149 113417184 -129247169 + AT_rich Low_complexity Low_complexity 1 35 0 957 251 16 24 chr1 113418018 113418077 -129246276 + MER92B LTR ERV1 5 63 -573 1985 131 64 17 chr1 113418077 113418435 -129245918 + THE1C LTR MaLR 1 375 0 957 251 16 24 chr1 113418435 113418622 -129245731 + MER92B LTR ERV1 63 249 -387 338 235 121 20 chr1 113420209 113420358 -129243995 - MER103 DNA DNA -2 164 1 195 182 109 0 chr1 113420448 113420503 -129243850 + L3 LINE CR1 324 384 -1193 181 256 0 0 chr1 113420703 113420742 -129243611 + MIR SINE MIR 93 131 -131 343 318 168 6 chr1 113420881 113421054 -129243299 + MIR SINE MIR 3 203 -59 709 242 93 34 chr1 113421603 113421895 -129242458 + MLT1H LTR MaLR 229 624 -2 533 68 27 0 chr1 113422420 113422493 -129241860 + MADE1 DNA Mariner 2 76 -4 366 240 13 0 chr1 113424106 113424181 -129240172 + MER21B LTR ERV1 13 88 -775 2443 265 90 24 chr1 113424185 113424922 -129239431 + MER21B LTR ERV1 43 827 -36 1682 162 6 22 chr1 113426030 113426345 -129238008 - AluJo SINE Alu -2 310 1 23 33 0 0 chr1 113427482 113427512 -129236841 + AT_rich Low_complexity Low_complexity 1 30 0 1070 195 15 5 chr1 113427587 113427792 -129236561 - AluJb SINE Alu -24 288 82 24 0 0 0 chr1 113428445 113428469 -129235884 + AT_rich Low_complexity Low_complexity 1 24 0 2004 137 9 12 chr1 113428574 113428910 -129235443 + LTR60 LTR ERV1 14 348 -238 2362 202 12 0 chr1 113428941 113429432 -129234921 - L1PB1 LINE L1 -1187 4959 4463 * 3672 141 3 27 chr1 113429431 113430294 -129234059 + L1PB1 LINE L1 4949 5791 -360 397 74 14 81 chr1 113430294 113430442 -129233911 + (TA)n Simple_repeat Simple_repeat 1 138 0 2159 121 35 0 chr1 113430451 113430797 -129233556 + L1PB1 LINE L1 5791 6148 -3 1320 156 19 23 chr1 113430797 113431053 -129233300 + LTR60 LTR ERV1 332 586 0 476 233 4 131 chr1 113430879 113431124 -129233229 + TAR1 Satellite telomeric 28 241 -1870 * 263 87 109 0 chr1 113431118 113431164 -129233189 + LTR60 LTR ERV1 536 586 0 * 4100 193 20 72 chr1 113431251 113432124 -129232229 - L1MCa LINE L1 -5479 947 31 1930 118 0 7 chr1 113432124 113432470 -129231883 - AluSp SINE Alu 0 344 1 2061 92 58 3 chr1 113432474 113432769 -129231584 - AluSq SINE Alu -2 311 1 4100 193 20 72 chr1 113432769 113432864 -129231489 - L1MCa LINE L1 -6398 28 22 1053 140 0 0 chr1 113433184 113433427 -129230926 + (TA)n Simple_repeat Simple_repeat 1 243 0 311 192 0 5 chr1 113434222 113434287 -129230066 - Alu SINE Alu -2 300 243 4089 84 0 4 chr1 113434287 113434843 -129229510 - MER41A LTR ERV1 0 554 1 29 28 0 0 chr1 113435058 113435094 -129229259 + AT_rich Low_complexity Low_complexity 1 36 0 1808 139 0 0 chr1 113436099 113436365 -129227988 + AluSc SINE Alu 1 266 -43 213 39 0 0 chr1 113436366 113436392 -129227961 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2216 113 0 0 chr1 113437018 113437329 -129227024 - AluSq SINE Alu -2 311 1 23 33 0 0 chr1 113438037 113438067 -129226286 + AT_rich Low_complexity Low_complexity 1 30 0 226 219 0 0 chr1 113438275 113438316 -129226037 + (TG)n Simple_repeat Simple_repeat 2 42 0 1204 156 151 2 chr1 113438669 113438927 -129225426 + L1PA16 LINE L1 5581 5877 -289 3990 15 53 0 chr1 113438968 113439441 -129224912 - L1PA3 LINE L1 -1660 4486 3989 7360 38 2 0 chr1 113439441 113441100 -129223253 + L1PA3 LINE L1 4492 6152 -3 2163 146 32 22 chr1 113442383 113442754 -129221599 - THE1C LTR MaLR 0 375 1 9013 131 42 48 chr1 113442754 113444343 -129220010 - THE1C-int LTR MaLR -1 1579 1 2467 116 8 26 chr1 113444344 113444725 -129219628 - THE1C LTR MaLR -1 374 1 412 320 113 4 chr1 113445099 113445467 -129218886 + MLT1J LTR MaLR 10 460 -51 1923 141 0 17 chr1 113445824 113446122 -129218231 - AluSx SINE Alu -19 293 1 228 388 158 6 chr1 113446426 113446939 -129217414 - L2 LINE L2 -921 2393 1803 1032 316 33 30 chr1 113447164 113447594 -129216759 + LTR16A LTR ERVL 18 448 -2 342 0 0 0 chr1 113448027 113448065 -129216288 + (CA)n Simple_repeat Simple_repeat 2 39 0 385 245 31 0 chr1 113448159 113448257 -129216096 - LTR16A1 LTR ERVL 0 457 357 22 35 0 0 chr1 113449307 113449336 -129215017 + AT_rich Low_complexity Low_complexity 1 29 0 6947 60 26 0 chr1 113449407 113450275 -129214078 - MER11D LTR ERVK -6 891 1 27 73 0 0 chr1 113451276 113451331 -129213022 + AT_rich Low_complexity Low_complexity 1 55 0 31 44 0 0 chr1 113451727 113451772 -129212581 + AT_rich Low_complexity Low_complexity 1 45 0 634 242 26 26 chr1 113455068 113455258 -129209095 + L1MC4a LINE L1 6403 6592 -1216 1738 221 146 65 chr1 113455307 113456135 -129208218 + L1MC4 LINE L1 6866 7760 -282 251 156 94 0 chr1 113456137 113456233 -129208120 + (TTATA)n Simple_repeat Simple_repeat 3 107 0 434 184 148 74 chr1 113456257 113456513 -129207840 + L1MC4 LINE L1 7766 8040 -2 391 321 76 58 chr1 113456707 113457152 -129207201 + L3 LINE CR1 415 867 -710 879 28 0 0 chr1 113457939 113458046 -129206307 + L1PA5 LINE L1 6048 6154 0 373 204 9 19 chr1 113458718 113458826 -129205527 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 312 27 0 0 chr1 113458828 113458865 -129205488 + (CA)n Simple_repeat Simple_repeat 2 38 0 466 310 73 62 chr1 113460881 113461361 -129202992 - L1M4 LINE L1 -753 5393 4909 1055 271 188 17 chr1 113461534 113462177 -129202176 - L1ME3A LINE L1 -83 6882 6130 2212 98 0 26 chr1 113462190 113462497 -129201856 + AluSq SINE Alu 1 299 -14 507 291 52 8 chr1 113462515 113462783 -129201570 - L1ME3A LINE L1 -832 6109 5830 1172 205 66 75 chr1 113462841 113463188 -129201165 + MER2 DNA MER2_type 1 344 -1 284 327 18 0 chr1 113463217 113463330 -129201023 - L1ME3A LINE L1 -1240 5701 5587 986 310 153 21 chr1 113463330 113463795 -129200558 + MER45C DNA AcHobo 428 953 0 7013 52 13 1 chr1 113463945 113465479 -129198874 - L1PA4 LINE L1 -3 6152 4610 22010 41 6 1 chr1 113465579 113468966 -129195387 - L1PA4 LINE L1 -125 6030 2635 3397 60 0 0 chr1 113468963 113469400 -129194953 + L1PA4 LINE L1 2207 2643 -3503 * 226 269 75 88 chr1 113470471 113470698 -129193655 - L1ME3A LINE L1 -3 6167 5944 22 0 0 0 chr1 113470969 113470991 -129193362 + AT_rich Low_complexity Low_complexity 1 22 0 267 79 0 0 chr1 113471157 113471195 -129193158 + (A)n Simple_repeat Simple_repeat 1 38 0 324 296 72 8 chr1 113471235 113471360 -129192993 - MLT1J2 LTR MaLR -294 156 24 349 171 13 13 chr1 113471961 113472037 -129192316 - THE1B LTR MaLR -2 362 287 284 93 0 0 chr1 113472031 113472074 -129192279 - THE1C LTR MaLR -332 43 1 * 2982 146 20 68 chr1 113472074 113472336 -129192017 - LTR26 LTR ERV1 -57 546 325 2105 127 3 0 chr1 113472336 113472635 -129191718 - AluSx SINE Alu -6 306 7 2982 146 20 68 chr1 113472635 113472946 -129191407 - LTR26 LTR ERV1 -278 325 1 834 248 116 41 chr1 113473268 113473933 -129190420 - L1M4 LINE L1 -2435 3711 2997 379 289 42 0 chr1 113473941 113474083 -129190270 - L1ME3A LINE L1 -2325 4616 4469 229 319 35 12 chr1 113474118 113474287 -129190066 + L1M4 LINE L1 3343 3515 -2631 5880 171 16 5 chr1 113474477 113476452 -129187901 - L1PB1 LINE L1 -6 6145 4151 1392 193 134 0 chr1 113477171 113477477 -129186876 + MER7A DNA MER2_type 1 345 -1 1812 167 7 94 chr1 113477605 113478030 -129186323 + MLT1B LTR MaLR 3 390 0 297 245 99 46 chr1 113478188 113478339 -129186014 - L2 LINE L2 0 3313 3155 335 286 67 34 chr1 113478442 113478680 -129185673 - L1ME3A LINE L1 -4267 2855 2610 1930 167 0 0 chr1 113478681 113478969 -129185384 + AluSx SINE Alu 1 288 -24 21 57 0 0 chr1 113478969 113479004 -129185349 + AT_rich Low_complexity Low_complexity 1 35 0 564 212 152 0 chr1 113479068 113479200 -129185153 + FRAM SINE Alu 16 167 -9 479 316 44 35 chr1 113479206 113479659 -129184694 - L1ME3A LINE L1 -4543 2579 2123 1078 254 98 84 chr1 113479661 113480672 -129183681 - L1MCc LINE L1 -4892 1531 824 24 67 0 0 chr1 113481709 113481754 -129182599 + AT_rich Low_complexity Low_complexity 1 45 0 1168 187 21 11 chr1 113482302 113482585 -129181768 - L1MA4 LINE L1 0 6300 6015 924 289 32 10 chr1 113482825 113483196 -129181157 - MLT1E LTR MaLR -29 564 119 248 304 22 0 chr1 113483205 113483297 -129181056 - MLT1E LTR MaLR -439 154 61 2210 95 0 0 chr1 113484089 113484408 -129179945 - AluY SINE Alu 0 319 1 401 285 49 0 chr1 113485009 113485153 -129179200 + L1ME2 LINE L1 6001 6151 -13 3936 227 46 5 chr1 113485387 113486464 -129177889 - L1MD1 LINE L1 -1 6241 5121 719 171 65 65 chr1 113486477 113486562 -129177791 - L1MA4 LINE L1 -9 6291 6207 1661 193 7 10 chr1 113486562 113486863 -129177490 + AluJb SINE Alu 1 300 -12 719 171 65 65 chr1 113486863 113486994 -129177359 - L1MA4 LINE L1 -92 6208 6075 2281 117 125 71 chr1 113487021 113487484 -129176869 + LTR10A LTR ERV1 1 488 -121 40879 68 1 4 chr1 113487490 113493653 -129170700 + L1PA5 LINE L1 3 6149 -5 32 43 0 0 chr1 113493653 113493699 -129170654 + AT_rich Low_complexity Low_complexity 1 46 0 481 150 50 0 chr1 113493700 113493780 -129170573 + LTR10E LTR ERV1 527 610 -23 2085 172 30 18 chr1 113493837 113494272 -129170081 - L1MA4 LINE L1 -183 6117 5678 3072 121 2 0 chr1 113494272 113494702 -129169651 + LTR3 LTR ERVK 1 431 -1 14527 120 17 17 chr1 113494709 113496940 -129167413 + HERVK3 LTR ERVK 40 2269 -4974 5295 49 0 0 chr1 113496942 113497590 -129166763 + L1PA4 LINE L1 5503 6150 -5 570 172 139 7 chr1 113497590 113497741 -129166612 + L1MD3 LINE L1 7812 7982 -13 2670 78 73 3 chr1 113497749 113498131 -129166222 + HERVK3 LTR ERVK 2268 2676 -4567 * 25067 114 12 3 chr1 113498115 113501789 -129162564 + HERVK3 LTR ERVK 3536 7241 -2 2740 165 2 0 chr1 113501791 113502221 -129162132 + LTR3 LTR ERVK 1 431 -1 2019 157 29 0 chr1 113502227 113502570 -129161783 - L1MA4 LINE L1 -621 5684 5332 2246 213 44 19 chr1 113502571 113502704 -129161649 + L1 LINE L1 4730 4858 -1288 1945 142 14 7 chr1 113502704 113502999 -129161354 + AluSg SINE Alu 1 297 -13 2246 213 44 19 chr1 113502999 113503451 -129160902 + L1 LINE L1 4858 5330 -816 12446 200 31 30 chr1 113503543 113506170 -129158183 + L1MA2 LINE L1 1188 3813 -3910 2636 144 7 14 chr1 113506170 113506601 -129157752 + MSTA LTR MaLR 1 428 0 12446 200 31 30 chr1 113506601 113510568 -129153785 + L1MA2 LINE L1 3813 7723 0 2321 251 49 21 chr1 113510604 113511458 -129152895 - L1M4 LINE L1 -1091 5055 4178 594 235 80 16 chr1 113511458 113511652 -129152701 - MLT1C LTR MaLR -193 197 1 1882 288 78 9 chr1 113511652 113512193 -129152160 + L1MDa LINE L1 196 773 -5767 315 282 154 45 chr1 113513399 113513555 -129150798 - Charlie8 DNA MER1_type -2243 174 2 1710 204 30 50 chr1 113514600 113515202 -129149151 + pTR5 LTR ERV1 743 1332 -1106 4451 114 55 65 chr1 113515219 113516049 -129148304 + LTR12 LTR ERV1 5 826 0 7552 167 14 10 chr1 113516049 113517507 -129146846 - L1P LINE L1 -2597 3549 2087 989 239 8 21 chr1 113517516 113517759 -129146594 - L1PA12 LINE L1 -7332 249 10 195 296 0 0 chr1 113517788 113517832 -129146521 + L2 LINE L2 3167 3210 -62 1667 189 14 82 chr1 113518276 113518689 -129145664 - MLT1B LTR MaLR -5 385 1 520 283 96 84 chr1 113519193 113519632 -129144721 + MLT1H LTR MaLR 8 451 -98 3920 165 16 46 chr1 113519716 113520449 -129143904 + MER50 LTR ERV1 1 711 -23 3079 61 0 5 chr1 113520667 113521063 -129143290 + L1PA5 LINE L1 5652 6045 -109 2633 145 28 126 chr1 113522346 113523030 -129141323 - L1MA4A LINE L1 -5 6298 5682 2117 105 3 10 chr1 113523730 113524034 -129140319 + AluSc SINE Alu 1 302 -7 232 289 47 38 chr1 113524696 113524907 -129139446 - L1ME LINE L1 -237 5884 5672 3066 179 57 39 chr1 113525462 113526176 -129138177 - LTR8A LTR ERV1 0 727 1 297 304 0 24 chr1 113526239 113526364 -129137989 - L2 LINE L2 -817 2497 2376 729 193 0 15 chr1 113526509 113526644 -129137709 + AluSq/x SINE Alu 1 133 -180 34 42 0 0 chr1 113527137 113527185 -129137168 + AT_rich Low_complexity Low_complexity 1 48 0 2048 125 3 0 chr1 113527185 113527480 -129136873 + AluSp SINE Alu 1 296 -17 23 33 0 0 chr1 113528601 113528631 -129135722 + AT_rich Low_complexity Low_complexity 1 30 0 2177 170 6 8 chr1 113528637 113529002 -129135351 - THE1B LTR MaLR 0 364 1 9693 136 11 29 chr1 113529002 113530611 -129133742 - THE1C-int LTR MaLR 0 1580 1 2207 148 27 0 chr1 113530611 113530976 -129133377 - THE1C LTR MaLR 0 375 1 186 43 0 0 chr1 113531195 113531218 -129133135 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1758 164 62 34 chr1 113531660 113532014 -129132339 - THE1B LTR MaLR 0 364 1 10979 94 25 16 chr1 113532014 113532250 -129132103 - THE1B-int LTR MaLR 0 1580 1348 1919 135 47 0 chr1 113532250 113532546 -129131807 + AluSg SINE Alu 1 310 0 10979 94 25 16 chr1 113532546 113533870 -129130483 - THE1B-int LTR MaLR -232 1348 6 1787 135 51 73 chr1 113533876 113534246 -129130107 - THE1B LTR MaLR -1 363 2 1345 280 99 34 chr1 113535109 113535481 -129128872 + MER69 DNA AcHobo 10 427 -799 2276 167 34 7 chr1 113535481 113535895 -129128458 + MSTA LTR MaLR 1 425 -3 1345 280 99 34 chr1 113535895 113536047 -129128306 + MER69 DNA AcHobo 427 568 -658 734 215 207 26 chr1 113536045 113536436 -129127917 + MER69 DNA AcHobo 2010 2471 -55 * 252 0 0 0 chr1 113539064 113539092 -129125261 + (TA)n Simple_repeat Simple_repeat 2 29 0 1885 148 23 0 chr1 113539094 113539397 -129124956 - AluSx SINE Alu -2 310 1 227 338 14 113 chr1 113540634 113540776 -129123577 + MIR3 SINE MIR 13 140 -68 209 310 99 0 chr1 113541070 113541141 -129123212 + L2 LINE L2 3191 3268 -4 238 319 97 18 chr1 113544073 113544186 -129120167 + L2 LINE L2 2915 3036 -236 217 418 14 14 chr1 113544223 113544364 -129119989 + MIR SINE MIR 24 164 -98 21 0 0 0 chr1 113544388 113544409 -129119944 + AT_rich Low_complexity Low_complexity 1 21 0 1236 118 94 5 chr1 113544687 113544889 -129119464 + MER39B LTR ERV1 1 220 -433 3202 161 36 9 chr1 113544889 113545468 -129118885 + MER50 LTR ERV1 1 595 -139 1761 198 88 29 chr1 113545508 113545928 -129118425 + MER39 LTR ERV1 263 707 0 246 213 88 73 chr1 113546154 113546290 -129118063 - L1ME4a LINE L1 -2 6119 5982 24 53 0 0 chr1 113548058 113548096 -129116257 + AT_rich Low_complexity Low_complexity 1 38 0 1850 176 5 76 chr1 113548218 113548638 -129115715 + MLT1B LTR MaLR 1 390 0 23 0 0 0 chr1 113549852 113549875 -129114478 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr1 113549971 113549998 -129114355 + (TG)n Simple_repeat Simple_repeat 2 28 0 29 28 0 0 chr1 113551959 113551995 -129112358 + AT_rich Low_complexity Low_complexity 1 36 0 1405 216 3 28 chr1 113552180 113552500 -129111853 + AluJo SINE Alu 1 312 0 255 183 42 84 chr1 113553123 113553194 -129111159 + MIR SINE MIR 117 184 -78 183 100 0 0 chr1 113554665 113554695 -129109658 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1531 194 3 7 chr1 113554839 113555132 -129109221 + AluJb SINE Alu 1 292 -20 1145 122 0 0 chr1 113555364 113555528 -129108825 - AluSg/x SINE Alu -12 300 140 225 308 47 19 chr1 113556616 113556723 -129107630 - MIR SINE MIR -14 248 139 500 333 16 16 chr1 113556724 113556907 -129107446 - MIR SINE MIR -68 194 12 25 0 0 0 chr1 113558024 113558049 -129106304 + AT_rich Low_complexity Low_complexity 1 25 0 47 44 0 0 chr1 113558773 113558841 -129105512 + AT_rich Low_complexity Low_complexity 1 68 0 242 254 15 0 chr1 113558932 113558999 -129105354 + (TA)n Simple_repeat Simple_repeat 2 69 0 23 33 0 0 chr1 113559192 113559222 -129105131 + AT_rich Low_complexity Low_complexity 1 30 0 40 21 0 0 chr1 113559481 113559528 -129104825 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr1 113559909 113559937 -129104416 + AT_rich Low_complexity Low_complexity 1 28 0 547 259 14 21 chr1 113560509 113560652 -129103701 + L1PB4 LINE L1 6013 6154 -2 286 148 130 0 chr1 113561547 113561601 -129102752 + MSTD LTR MaLR 63 123 -309 2077 123 3 3 chr1 113561624 113561924 -129102429 + AluSq SINE Alu 1 300 -13 621 263 63 0 chr1 113561937 113562112 -129102241 + MSTD LTR MaLR 200 385 -11 26 82 0 0 chr1 113563066 113563127 -129101226 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr1 113563272 113563295 -129101058 + AT_rich Low_complexity Low_complexity 1 23 0 300 267 29 19 chr1 113563401 113563506 -129100847 + (TATATG)n Simple_repeat Simple_repeat 3 108 0 1639 157 4 4 chr1 113564455 113564722 -129099631 - AluJb SINE Alu -18 294 28 595 28 0 0 chr1 113564722 113564793 -129099560 - L1PA4 LINE L1 -1152 4994 4924 7582 28 2 0 chr1 113564793 113565970 -129098383 + L1PA4 LINE L1 4974 6152 -3 307 141 31 0 chr1 113565985 113566049 -129098304 + GA-rich Low_complexity Low_complexity 3 68 0 25 0 0 0 chr1 113566594 113566619 -129097734 + AT_rich Low_complexity Low_complexity 1 25 0 405 316 90 19 chr1 113566672 113566884 -129097469 - MIR SINE MIR 0 262 36 1509 199 35 7 chr1 113566999 113567286 -129097067 - AluJb SINE Alu -17 295 1 198 103 0 0 chr1 113567296 113567325 -129097028 + (T)n Simple_repeat Simple_repeat 1 29 0 21 57 0 0 chr1 113568201 113568236 -129096117 + AT_rich Low_complexity Low_complexity 1 35 0 185 178 22 0 chr1 113568249 113568294 -129096059 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 493 322 91 25 chr1 113568308 113569326 -129095027 - L1ME3A LINE L1 -293 5877 4787 2625 150 9 2 chr1 113569621 113570048 -129094305 + MSTB1 LTR MaLR 1 430 -2 28 48 0 0 chr1 113570473 113570515 -129093838 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr1 113570771 113570820 -129093533 + AT_rich Low_complexity Low_complexity 1 49 0 27 29 0 0 chr1 113570933 113570967 -129093386 + AT_rich Low_complexity Low_complexity 1 34 0 297 311 68 0 chr1 113571329 113571432 -129092921 - MIR SINE MIR -139 123 14 26 0 0 0 chr1 113571808 113571834 -129092519 + AT_rich Low_complexity Low_complexity 1 26 0 2486 122 14 0 chr1 113573230 113573600 -129090753 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr1 113575031 113575054 -129089299 + AT_rich Low_complexity Low_complexity 1 23 0 639 194 118 65 chr1 113575470 113575504 -129088849 - MER20 DNA MER1_type -4 215 184 1528 94 0 10 chr1 113575504 113575707 -129088646 - AluSc SINE Alu -21 288 88 639 194 118 65 chr1 113575707 113575858 -129088495 - MER20 DNA MER1_type -35 184 20 23 0 0 0 chr1 113576367 113576390 -129087963 + AT_rich Low_complexity Low_complexity 1 23 0 1742 218 147 8 chr1 113577618 113578127 -129086226 + L1P LINE L1 4609 5188 -958 188 35 35 0 chr1 113579171 113579200 -129085153 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 32 26 0 0 chr1 113579971 113580010 -129084343 + AT_rich Low_complexity Low_complexity 1 39 0 210 337 30 20 chr1 113580551 113580652 -129083701 + MIR SINE MIR 58 159 -103 277 248 40 172 chr1 113582650 113582848 -129081505 - MER5B DNA MER1_type 0 178 7 2463 34 0 10 chr1 113582994 113583287 -129081066 - AluY SINE Alu -21 290 1 33 73 0 0 chr1 113584172 113584240 -129080113 + AT_rich Low_complexity Low_complexity 1 68 0 2200 67 0 51 chr1 113584697 113585009 -129079344 + AluY SINE Alu 1 296 -15 22 0 0 0 chr1 113585749 113585771 -129078582 + AT_rich Low_complexity Low_complexity 1 22 0 438 230 50 88 chr1 113585933 113586172 -129078181 + MER112 DNA MER1_type 19 248 -12 24 0 0 0 chr1 113586843 113586867 -129077486 + AT_rich Low_complexity Low_complexity 1 24 0 32 57 0 0 chr1 113587890 113587943 -129076410 + AT_rich Low_complexity Low_complexity 1 53 0 738 73 0 3 chr1 113588208 113588441 -129075912 + AluY SINE Alu 1 306 -5 41972 38 24 1 chr1 113588876 113594887 -129069466 - L1PA2 LINE L1 -3 6152 4 3254 221 67 88 chr1 113596593 113597871 -129066482 + Charlie1a DNA MER1_type 5 1255 -200 829 88 0 0 chr1 113597989 113598091 -129066262 + AluSc SINE Alu 187 288 -21 37 23 0 0 chr1 113598164 113598208 -129066145 + AT_rich Low_complexity Low_complexity 1 44 0 1824 58 0 137 chr1 113598426 113598783 -129065570 - AluY SINE Alu 0 313 2 1959 143 23 47 chr1 113599065 113599449 -129064904 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr1 113600160 113600188 -129064165 + AT_rich Low_complexity Low_complexity 1 28 0 207 287 0 93 chr1 113600658 113600787 -129063566 + L2 LINE L2 3195 3311 -2 223 282 141 39 chr1 113600790 113600946 -129063407 + MIR SINE MIR 59 230 -32 196 306 0 0 chr1 113600986 113601048 -129063305 + MIR SINE MIR 193 254 -8 2207 111 3 0 chr1 113602006 113602312 -129062041 + AluSq SINE Alu 1 307 -6 399 289 15 22 chr1 113604051 113604186 -129060167 - MER112 DNA MER1_type -2 258 125 1774 184 80 32 chr1 113604449 113604885 -129059468 + MSTB2 LTR MaLR 1 457 0 22 88 0 0 chr1 113605637 113605694 -129058659 + AT_rich Low_complexity Low_complexity 1 57 0 1423 179 26 33 chr1 113606458 113606760 -129057593 + AluJo SINE Alu 13 312 0 38 0 0 0 chr1 113606828 113606866 -129057487 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 113607034 113607058 -129057295 + AT_rich Low_complexity Low_complexity 1 24 0 30 27 0 0 chr1 113608019 113608056 -129056297 + AT_rich Low_complexity Low_complexity 1 37 0 388 326 84 65 chr1 113608120 113608941 -129055412 + L2 LINE L2 2421 3264 -49 214 341 42 55 chr1 113609831 113610048 -129054305 - MIR SINE MIR 0 262 49 423 38 0 0 chr1 113610462 113610515 -129053838 + (CA)n Simple_repeat Simple_repeat 2 54 0 209 299 52 37 chr1 113610598 113610732 -129053621 + L2 LINE L2 2151 2286 -1028 668 206 41 7 chr1 113612093 113612239 -129052114 + MSTD LTR MaLR 1 151 -245 25 99 0 0 chr1 113613879 113613960 -129050393 + AT_rich Low_complexity Low_complexity 1 81 0 291 342 6 41 chr1 113614221 113614382 -129049971 - MIR SINE MIR -67 141 39 37 23 0 0 chr1 113614728 113614772 -129049581 + AT_rich Low_complexity Low_complexity 1 44 0 185 295 77 77 chr1 113616342 113616498 -129047855 + MIR SINE MIR 91 246 -16 22 103 0 0 chr1 113619986 113620064 -129044289 + AT_rich Low_complexity Low_complexity 1 78 0 209 279 0 0 chr1 113620574 113620642 -129043711 + (TA)n Simple_repeat Simple_repeat 2 69 0 297 283 250 0 chr1 113622039 113622159 -129042194 + L3b LINE CR1 1272 1421 -162 441 148 0 0 chr1 113623148 113623229 -129041124 + (TG)n Simple_repeat Simple_repeat 1 81 0 223 265 0 0 chr1 113625257 113625306 -129039047 + (CATA)n Simple_repeat Simple_repeat 3 51 0 236 271 92 79 chr1 113625311 113625551 -129038802 + L2 LINE L2 2175 2417 -897 2351 70 0 3 chr1 113625788 113626100 -129038253 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 113628864 113628886 -129035467 + AT_rich Low_complexity Low_complexity 1 22 0 1831 85 55 4 chr1 113629294 113629565 -129034788 + AluSc SINE Alu 1 285 -24 188 35 35 0 chr1 113629568 113629597 -129034756 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 27 0 0 0 chr1 113630043 113630070 -129034283 + AT_rich Low_complexity Low_complexity 1 27 0 221 204 0 19 chr1 113631511 113631565 -129032788 + (TA)n Simple_repeat Simple_repeat 1 53 0 558 200 135 24 chr1 113632514 113632684 -129031669 - MER5A DNA MER1_type 0 189 1 2466 84 0 0 chr1 113634954 113635264 -129029089 - AluSx SINE Alu -2 310 1 440 181 94 31 chr1 113635372 113635499 -129028854 + MER53 DNA DNA 37 171 -18 22 35 0 0 chr1 113637086 113637115 -129027238 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr1 113637856 113637878 -129026475 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 572 216 26 0 chr1 113637885 113638001 -129026352 - FLAM_A SINE Alu -14 119 1 38 51 0 0 chr1 113638879 113638938 -129025415 + AT_rich Low_complexity Low_complexity 1 59 0 432 310 33 43 chr1 113639363 113639547 -129024806 + MER5A DNA MER1_type 2 183 -6 23 0 0 0 chr1 113640627 113640650 -129023703 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 113640968 113640996 -129023357 + AT_rich Low_complexity Low_complexity 1 28 0 1079 241 158 37 chr1 113641954 113642364 -129021989 + MLT1D LTR MaLR 12 471 -34 22 103 0 0 chr1 113642962 113643040 -129021313 + AT_rich Low_complexity Low_complexity 1 78 0 3554 25 39 0 chr1 113644884 113645322 -129019031 + L1PA4 LINE L1 5699 6153 -2 328 332 64 10 chr1 113645588 113645742 -129018611 + MER5B DNA MER1_type 3 176 -13 185 156 0 22 chr1 113645996 113646041 -129018312 + (TA)n Simple_repeat Simple_repeat 2 45 0 3046 168 48 57 chr1 113646535 113647269 -129017084 + LTR8A LTR ERV1 1 727 0 219 69 0 0 chr1 113648005 113648034 -129016319 + (TG)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr1 113648223 113648250 -129016103 + AT_rich Low_complexity Low_complexity 1 27 0 1607 193 7 0 chr1 113648667 113648979 -129015374 + AluJb SINE Alu 1 314 0 25 31 0 0 chr1 113649080 113649112 -129015241 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 113649175 113649196 -129015157 + AT_rich Low_complexity Low_complexity 1 21 0 2014 127 0 0 chr1 113649514 113649820 -129014533 + AluSx SINE Alu 1 306 0 26 0 0 0 chr1 113650845 113650871 -129013482 + AT_rich Low_complexity Low_complexity 1 26 0 850 177 130 2 chr1 113701094 113701308 -128963045 + L1MB5 LINE L1 5673 5907 -286 4313 169 60 6 chr1 113701445 113701929 -128962424 - MER6 DNA MER2_type 0 865 318 201 74 0 0 chr1 113701929 113701956 -128962397 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4313 169 60 6 chr1 113701956 113702291 -128962062 - MER6 DNA MER2_type -547 318 2 248 179 164 0 chr1 113702539 113702606 -128961747 - MIR SINE MIR -20 242 165 2412 43 0 0 chr1 113703104 113703409 -128960944 - AluY SINE Alu 0 306 2 226 352 107 47 chr1 113704239 113704472 -128959881 + L2 LINE L2 2837 3083 -189 549 266 32 25 chr1 113704911 113705069 -128959284 + MIR SINE MIR 36 194 -68 1175 201 81 4 chr1 113705138 113705397 -128958956 + MER58B DNA MER1_type 39 317 -24 575 261 85 7 chr1 113705791 113705944 -128958409 + MER5B DNA MER1_type 7 171 -7 186 389 43 43 chr1 113706242 113706381 -128957972 + L2 LINE L2 3134 3272 0 2089 103 7 0 chr1 113706544 113706852 -128957501 + AluSg SINE Alu 7 316 0 257 341 212 0 chr1 113707241 113707411 -128956942 + MIR SINE MIR 43 248 -14 14879 141 29 33 chr1 113708881 113711609 -128952744 + Tigger2 DNA MER2_type 2 2717 -1 395 360 30 34 chr1 113712044 113712308 -128952045 - L2 LINE L2 -175 3138 2876 1561 284 55 27 chr1 113712629 113712776 -128951577 - L2 LINE L2 -459 2855 2714 418 141 0 0 chr1 113712776 113712847 -128951506 - L1MC2 LINE L1 -13 6331 6261 1561 284 55 27 chr1 113712847 113713336 -128951017 - L2 LINE L2 -600 2714 2201 216 286 117 0 chr1 113714501 113714578 -128949775 + L2 LINE L2 3203 3288 -25 243 349 38 38 chr1 113715261 113715367 -128948986 - L2 LINE L2 -1 3312 3207 256 293 0 0 chr1 113715753 113715811 -128948542 - L2 LINE L2 -5 3308 3251 212 59 29 0 chr1 113716150 113716184 -128948169 + (TA)n Simple_repeat Simple_repeat 1 35 0 216 296 113 35 chr1 113716694 113716809 -128947544 - L2 LINE L2 -15 3257 3134 695 320 9 4 chr1 113717440 113717665 -128946688 + MIR SINE MIR 13 238 -24 23 33 0 0 chr1 113720004 113720034 -128944319 + AT_rich Low_complexity Low_complexity 1 30 0 208 277 96 48 chr1 113720727 113720810 -128943543 + MIR3 SINE MIR 107 193 -15 23 92 0 0 chr1 113721966 113722031 -128942322 + AT_rich Low_complexity Low_complexity 1 65 0 212 250 0 0 chr1 113723799 113723843 -128940510 + GA-rich Low_complexity Low_complexity 1 44 0 212 174 0 22 chr1 113725241 113725287 -128939066 + C-rich Low_complexity Low_complexity 4 48 0 21 0 0 0 chr1 113725777 113725798 -128938555 + AT_rich Low_complexity Low_complexity 1 21 0 221 274 16 0 chr1 113726389 113726451 -128937902 + L2 LINE L2 3250 3312 -1 315 0 0 0 chr1 113728502 113728537 -128935816 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 24 77 0 0 chr1 113729712 113729764 -128934589 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr1 113730697 113730728 -128933625 + AT_rich Low_complexity Low_complexity 1 31 0 2341 81 0 3 chr1 113732208 113732505 -128931848 + AluY SINE Alu 1 296 -15 180 0 0 0 chr1 113733347 113733367 -128930986 + (TG)n Simple_repeat Simple_repeat 2 21 0 487 307 115 59 chr1 113733448 113733839 -128930514 - MLT1H1 LTR MaLR -75 480 68 274 243 257 33 chr1 113733913 113734127 -128930226 - MLT1H1-int LTR MaLR -38 1697 1436 183 315 37 0 chr1 113734847 113734901 -128929452 - L3 LINE CR1 -450 1127 1072 2745 229 25 58 chr1 113734952 113735637 -128928716 + MER21B LTR ERV1 3 664 -199 26 0 0 0 chr1 113735661 113735687 -128928666 + AT_rich Low_complexity Low_complexity 1 26 0 2280 84 3 0 chr1 113736806 113737102 -128927251 - AluSx SINE Alu -15 297 1 255 292 81 62 chr1 113737130 113737291 -128927062 - MER5A DNA MER1_type 0 189 26 21 0 0 0 chr1 113737467 113737488 -128926865 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 113737553 113737574 -128926779 + AT_rich Low_complexity Low_complexity 1 21 0 32 43 0 0 chr1 113737801 113737847 -128926506 + AT_rich Low_complexity Low_complexity 1 46 0 29 28 0 0 chr1 113738290 113738326 -128926027 + AT_rich Low_complexity Low_complexity 1 36 0 30 69 0 0 chr1 113739557 113739615 -128924738 + AT_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr1 113741865 113741894 -128922459 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 113742820 113742849 -128921504 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr1 113743327 113743376 -128920977 + AT_rich Low_complexity Low_complexity 1 49 0 261 361 21 0 chr1 113745263 113745360 -128918993 + L2 LINE L2 3214 3312 -1 7599 29 0 4 chr1 113745688 113746992 -128917361 - L1PA3 LINE L1 -2 6153 4852 657 159 29 29 chr1 113747092 113747230 -128917123 + L1HS LINE L1 5781 5918 -237 1942 113 3 34 chr1 113747520 113747840 -128916513 - AluY SINE Alu -1 310 1 23 0 0 0 chr1 113747894 113747917 -128916436 + AT_rich Low_complexity Low_complexity 1 23 0 1921 114 44 17 chr1 113749043 113749341 -128915012 - AluSp SINE Alu -6 307 2 1116 186 5 27 chr1 113749817 113750037 -128914316 - AluJo SINE Alu -18 294 80 2143 113 3 0 chr1 113751171 113751464 -128912889 - AluSx SINE Alu -18 294 1 764 281 109 99 chr1 113751816 113752759 -128911594 + L1MB5 LINE L1 5 957 -5585 * 2435 229 55 21 chr1 113752758 113753650 -128910703 + L1MB5 LINE L1 5089 5971 -701 1389 167 49 4 chr1 113753650 113753913 -128910440 - AluJo SINE Alu -3 309 35 2990 230 29 1 chr1 113753940 113754606 -128909747 + L1MB5 LINE L1 5983 6666 -6 1434 245 74 96 chr1 113754609 113755804 -128908549 + Charlie7 DNA MER1_type 879 2046 -566 255 231 127 88 chr1 113755882 113756190 -128908163 + Charlie7 DNA MER1_type 2203 2522 -90 285 360 34 28 chr1 113756312 113756490 -128907863 - HERV16 LTR ERVL -876 4609 4431 527 349 70 19 chr1 113756551 113756921 -128907432 - HERV16 LTR ERVL -1369 4395 4007 1932 320 19 27 chr1 113756996 113757724 -128906629 - HERV16 LTR ERVL -1905 3091 2454 705 280 85 44 chr1 113757788 113758106 -128906247 - HERV16 LTR ERVL -2705 2291 1961 573 320 48 51 chr1 113758139 113758590 -128905763 - HERV16 LTR ERVL -3172 1824 1310 4355 103 28 28 chr1 113758594 113758829 -128905524 + L1PA13 LINE L1 5058 5291 -872 2787 10 0 0 chr1 113758829 113759138 -128905215 + AluYa5 SINE Alu 1 309 -2 4355 103 28 28 chr1 113759138 113759807 -128904546 + L1PA13 LINE L1 5291 5967 -196 1313 77 28 0 chr1 113759892 113760074 -128904279 + L1PA13 LINE L1 5977 6163 0 951 286 53 26 chr1 113760088 113760392 -128903961 - HERV16 LTR ERVL -3671 1325 1014 1362 214 142 10 chr1 113761957 113762345 -128902008 - L1MB7 LINE L1 -28 6156 5718 * 2922 261 71 42 chr1 113762321 113762874 -128901479 - L1M4c LINE L1 -4163 2662 2127 582 237 8 8 chr1 113762874 113763005 -128901348 - FLAM_A SINE Alu -2 131 1 2922 261 71 42 chr1 113763005 113764347 -128900006 - L1M4c LINE L1 -4698 2127 549 269 305 142 58 chr1 113765142 113765332 -128899021 + MIR3 SINE MIR 2 207 -1 453 71 24 12 chr1 113765396 113765480 -128898873 + (TA)n Simple_repeat Simple_repeat 2 86 0 28 0 0 0 chr1 113765502 113765530 -128898823 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr1 113766203 113766234 -128898119 + AT_rich Low_complexity Low_complexity 1 31 0 315 0 0 0 chr1 113766326 113766361 -128897992 + (TG)n Simple_repeat Simple_repeat 2 36 0 1780 150 0 24 chr1 113767254 113767548 -128896805 + AluSx SINE Alu 1 287 -25 210 37 0 0 chr1 113767548 113767575 -128896778 + (GA)n Simple_repeat Simple_repeat 2 28 0 224 370 20 79 chr1 113767723 113768128 -128896225 - L2 LINE L2 -563 2751 2371 2080 173 16 10 chr1 113768412 113768800 -128895553 + MLT1B LTR MaLR 1 390 0 21 57 0 0 chr1 113769332 113769367 -128894986 + AT_rich Low_complexity Low_complexity 1 35 0 442 226 122 0 chr1 113769876 113770057 -128894296 - Charlie5 DNA MER1_type -82 2530 2328 25 0 0 0 chr1 113770069 113770094 -128894259 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 113770533 113770563 -128893790 + AT_rich Low_complexity Low_complexity 1 30 0 319 334 108 31 chr1 113771513 113771836 -128892517 + LTR33 LTR ERVL 16 363 -158 301 112 16 75 chr1 113771990 113772178 -128892175 + (TA)n Simple_repeat Simple_repeat 1 177 0 260 97 26 61 chr1 113772238 113772352 -128892001 + (TA)n Simple_repeat Simple_repeat 2 111 0 402 275 58 0 chr1 113772502 113772622 -128891731 + L2 LINE L2 3187 3313 0 22 0 0 0 chr1 113773678 113773700 -128890653 + AT_rich Low_complexity Low_complexity 1 22 0 767 298 84 88 chr1 113773794 113774516 -128889837 - L2 LINE L2 0 3313 2591 225 290 0 0 chr1 113774524 113774586 -128889767 - MIR SINE MIR 0 262 201 22 56 0 0 chr1 113774659 113774695 -128889658 + AT_rich Low_complexity Low_complexity 1 36 0 43820 42 4 1 chr1 113774695 113780824 -128883529 - L1PA4 LINE L1 -3 6152 3 180 0 0 0 chr1 113783646 113783666 -128880687 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2061 134 3 7 chr1 113783694 113783999 -128880354 + AluSq SINE Alu 1 304 -9 621 343 47 4 chr1 113784002 113784235 -128880118 - MIR SINE MIR -10 252 10 997 113 238 0 chr1 113784711 113784896 -128879457 - MER30 DNA MER1_type -1 229 1 331 291 87 8 chr1 113784970 113785097 -128879256 + L1ME1 LINE L1 488 624 -5906 185 0 40 0 chr1 113785129 113785154 -128879199 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 296 331 55 12 chr1 113785280 113785443 -128878910 + L1ME1 LINE L1 781 950 -5580 1113 217 91 4 chr1 113785519 113785772 -128878581 + L1MC1 LINE L1 314 588 -5838 11043 135 42 80 chr1 113785772 113788006 -128876347 - Tigger1 DNA MER2_type 0 2418 270 817 189 20 0 chr1 113788027 113788180 -128876173 + Tigger1 DNA MER2_type 123 278 -2140 * 991 173 31 11 chr1 113788176 113788367 -128875986 - Tigger1 DNA MER2_type -2219 199 5 4598 161 89 22 chr1 113788449 113789891 -128874462 + L1MC1 LINE L1 573 2204 -4222 825 170 0 20 chr1 113789900 113790053 -128874300 + AluJo SINE Alu 1 150 -162 8281 230 70 25 chr1 113790076 113793629 -128870724 + L1MC1 LINE L1 2361 6128 -485 2303 78 7 7 chr1 113793629 113793936 -128870417 + AluY SINE Alu 1 307 -4 8281 230 70 25 chr1 113793936 113794441 -128869912 + L1MC1 LINE L1 6128 6609 -4 2320 71 0 10 chr1 113794459 113794767 -128869586 + AluY SINE Alu 1 305 -6 261 289 70 16 chr1 113794787 113794974 -128869379 + L1ME1 LINE L1 1109 1305 -5225 * 960 280 86 50 chr1 113794959 113795890 -128868463 + L1ME1 LINE L1 1571 2534 -4006 6513 268 71 20 chr1 113796052 113799511 -128864842 + L1ME1 LINE L1 2587 6232 -328 282 29 0 0 chr1 113799511 113799546 -128864807 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6513 268 71 20 chr1 113799546 113799593 -128864760 + L1ME1 LINE L1 6232 6275 -285 258 277 88 10 chr1 113799759 113799863 -128864490 + L1MB8 LINE L1 5891 6004 -168 643 207 24 0 chr1 113799867 113800031 -128864322 + L1MA10 LINE L1 6167 6334 0 243 0 0 0 chr1 113800769 113800796 -128863557 + (T)n Simple_repeat Simple_repeat 1 27 0 233 128 21 0 chr1 113801152 113801199 -128863154 + (TA)n Simple_repeat Simple_repeat 1 48 0 258 359 123 10 chr1 113801203 113801398 -128862955 - MIR SINE MIR -44 218 2 26 30 0 0 chr1 113804113 113804146 -128860207 + AT_rich Low_complexity Low_complexity 1 33 0 21 104 0 0 chr1 113804361 113804438 -128859915 + AT_rich Low_complexity Low_complexity 1 77 0 432 0 0 0 chr1 113804498 113804546 -128859807 + (TA)n Simple_repeat Simple_repeat 2 49 0 2103 91 0 14 chr1 113805109 113805435 -128858918 - AluSx SINE Alu 0 322 1 21 0 0 0 chr1 113808880 113808901 -128855452 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 113808967 113808988 -128855365 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 113809224 113809252 -128855101 + AT_rich Low_complexity Low_complexity 1 28 0 220 231 19 0 chr1 113809323 113809394 -128854959 + (TATG)n Simple_repeat Simple_repeat 1 72 0 334 289 173 106 chr1 113811213 113811611 -128852742 + L2 LINE L2 2886 3310 -3 226 244 0 0 chr1 113811754 113811799 -128852554 + L2 LINE L2 3265 3309 -4 21 0 0 0 chr1 113811936 113811957 -128852396 + AT_rich Low_complexity Low_complexity 1 21 0 701 272 60 9 chr1 113812512 113812729 -128851624 + MIR SINE MIR 20 247 -15 759 288 119 27 chr1 113812763 113813328 -128851025 + L2 LINE L2 2701 3313 0 279 301 103 24 chr1 113814661 113814874 -128849479 + L1ME LINE L1 5624 5853 -268 190 357 43 0 chr1 113814964 113815034 -128849319 + MIR SINE MIR 1 73 -189 2270 159 28 4 chr1 113815037 113815588 -128848765 + L1M2 LINE L1 5136 5703 -597 783 156 0 0 chr1 113815583 113815711 -128848642 + L1M2 LINE L1 5616 5743 -557 * 220 321 98 0 chr1 113815711 113815823 -128848530 + MIR SINE MIR 70 192 -70 27 62 0 0 chr1 113815876 113815924 -128848429 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr1 113816141 113816171 -128848182 + AT_rich Low_complexity Low_complexity 1 30 0 245 277 0 0 chr1 113816608 113816673 -128847680 + MIR SINE MIR 90 154 -108 201 74 0 0 chr1 113817488 113817515 -128846838 + (TAA)n Simple_repeat Simple_repeat 1 27 0 402 69 0 0 chr1 113817941 113817999 -128846354 + (TG)n Simple_repeat Simple_repeat 2 59 0 29 0 0 0 chr1 113818068 113818097 -128846256 + AT_rich Low_complexity Low_complexity 1 29 0 282 137 20 0 chr1 113818647 113818698 -128845655 - MSTA LTR MaLR -376 52 1 1571 164 10 30 chr1 113818712 113819011 -128845342 + THE1C LTR MaLR 83 375 0 2557 170 20 59 chr1 113819011 113819596 -128844757 + L1M2 LINE L1 5226 5791 -521 255 152 0 0 chr1 113819596 113819642 -128844711 + (TG)n Simple_repeat Simple_repeat 1 46 0 2156 92 3 0 chr1 113819934 113820229 -128844124 - AluSp SINE Alu -17 296 1 383 303 49 56 chr1 113820236 113820503 -128843850 + HAL1 LINE L1 45 309 -2198 635 188 7 54 chr1 113820795 113820944 -128843409 + LTR40a LTR ERVL 376 517 -2 264 333 49 10 chr1 113820954 113821056 -128843297 - MIR SINE MIR -123 139 34 26 30 0 0 chr1 113822152 113822185 -128842168 + AT_rich Low_complexity Low_complexity 1 33 0 218 85 64 0 chr1 113822314 113822361 -128841992 + (TA)n Simple_repeat Simple_repeat 2 51 0 251 287 35 11 chr1 113822361 113822448 -128841905 + MER57B LTR ERV1 134 222 -212 577 240 61 25 chr1 113822462 113822658 -128841695 + MER93a LTR ERV1 200 402 0 590 261 17 6 chr1 113823775 113823951 -128840402 - L1MA4 LINE L1 -2 6298 6121 217 357 82 31 chr1 113824231 113824329 -128840024 - L2 LINE L2 -10 3262 3160 871 235 33 16 chr1 113824757 113825004 -128839349 - LTR33 LTR ERVL -2 519 259 783 175 10 88 chr1 113825112 113825306 -128839047 + MER20 DNA MER1_type 36 214 -5 278 370 10 0 chr1 113825315 113825415 -128838938 - LTR33 LTR ERVL -381 140 40 2202 100 3 28 chr1 113825736 113826055 -128838298 + AluSp SINE Alu 1 311 -2 37 55 0 33 chr1 113826060 113826151 -128838202 + AT_rich Low_complexity Low_complexity 1 88 0 10866 67 9 4 chr1 113827189 113827527 -128836826 - L1PA8 LINE L1 0 6172 5837 378 0 0 0 chr1 113827527 113827569 -128836784 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1969 107 4 0 chr1 113827569 113827832 -128836521 - AluSp SINE Alu -30 283 20 10866 67 9 4 chr1 113827832 113829716 -128834637 - L1PA8 LINE L1 -334 5838 3920 6449 40 5 7 chr1 113829716 113830552 -128833801 + L1PA4 LINE L1 5344 6190 0 4145 110 9 26 chr1 113830556 113831217 -128833136 + L1PB1 LINE L1 5492 6141 -10 266 128 0 0 chr1 113831318 113831357 -128832996 - THE1C LTR MaLR -336 39 1 32 26 0 0 chr1 113834578 113834617 -128829736 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 113834690 113834718 -128829635 + AT_rich Low_complexity Low_complexity 1 28 0 31 68 0 0 chr1 113835789 113835848 -128828505 + AT_rich Low_complexity Low_complexity 1 59 0 2787 228 50 46 chr1 113836600 113837498 -128826855 + L1MB7 LINE L1 5278 6179 -5 21 36 0 0 chr1 113840725 113840753 -128823600 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr1 113841025 113841053 -128823300 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr1 113842071 113842103 -128822250 + (CAT)n Simple_repeat Simple_repeat 1 32 0 279 0 0 0 chr1 113842349 113842380 -128821973 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2388 63 30 0 chr1 113842697 113842998 -128821355 - AluY SINE Alu -1 310 1 325 322 76 17 chr1 113843224 113843342 -128821011 + L2 LINE L2 3112 3236 -36 23 0 0 0 chr1 113843676 113843699 -128820654 + AT_rich Low_complexity Low_complexity 1 23 0 1856 142 0 29 chr1 113843748 113844057 -128820296 + AluJb SINE Alu 3 302 -10 320 210 208 15 chr1 113844500 113844620 -128819733 + L1MD2 LINE L1 5769 5905 -269 2051 139 0 0 chr1 113845304 113845605 -128818748 + AluSq SINE Alu 3 303 -10 739 196 12 12 chr1 113846362 113846530 -128817823 - L1 LINE L1 -1071 5075 4908 304 281 178 22 chr1 113846533 113846718 -128817635 - L1 LINE L1 -1454 4692 4479 9311 58 5 26 chr1 113846963 113849013 -128815340 - L1PA6 LINE L1 -1 6153 4132 240 346 48 53 chr1 113849171 113849359 -128814994 + LTR33A LTR ERVL 2 188 -335 10464 185 27 20 chr1 113850107 113852548 -128811805 + L1PA13 LINE L1 3107 5561 -604 2108 173 8 18 chr1 113852557 113852955 -128811398 + L1PA13 LINE L1 5752 6145 -18 740 185 0 8 chr1 113853954 113854084 -128810269 + FLAM_A SINE Alu 1 129 -4 1004 58 7 0 chr1 113854088 113854225 -128810128 - L1P LINE L1 -727 5427 5290 229 91 0 0 chr1 113854215 113854248 -128810105 + L1PA6 LINE L1 6111 6143 -11 * 327 65 0 0 chr1 113854250 113854296 -128810057 + (GA)n Simple_repeat Simple_repeat 1 46 0 30 0 0 0 chr1 113854717 113854747 -128809606 + AT_rich Low_complexity Low_complexity 1 30 0 42 48 0 0 chr1 113855565 113855628 -128808725 + AT_rich Low_complexity Low_complexity 1 63 0 241 336 10 29 chr1 113855651 113855755 -128808598 - L2 LINE L2 0 3313 3212 23 0 0 0 chr1 113856636 113856659 -128807694 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 113856918 113856939 -128807414 + AT_rich Low_complexity Low_complexity 1 21 0 252 364 67 59 chr1 113858869 113859243 -128805110 + L2 LINE L2 374 750 -2564 1374 198 14 24 chr1 113859344 113859632 -128804721 + AluJo SINE Alu 6 290 -22 218 380 66 30 chr1 113859765 113860128 -128804225 + L2 LINE L2 783 1158 -2156 2808 177 79 67 chr1 113860139 113861340 -128803013 - L1MCa LINE L1 -3939 2668 1302 261 284 27 0 chr1 113861598 113861672 -128802681 - MER81 DNA DNA -4 110 35 884 338 16 5 chr1 113861772 113862139 -128802214 - L1MCa LINE L1 -6006 601 231 416 258 0 11 chr1 113862303 113862396 -128801957 - MER96 DNA MER1_type? 0 175 84 190 350 40 20 chr1 113863166 113863266 -128801087 - L2 LINE L2 -32 3281 3180 480 363 85 22 chr1 113863493 113863857 -128800496 - L2 LINE L2 -415 2899 2513 3231 230 16 12 chr1 113864281 113865081 -128799272 + L1M2 LINE L1 4399 5201 -945 1581 147 16 147 chr1 113865128 113865557 -128798796 + THE1C LTR MaLR 3 375 0 2557 170 20 59 chr1 113865557 113866142 -128798211 + L1M2 LINE L1 5226 5791 -521 255 152 0 0 chr1 113866142 113866188 -128798165 + (TG)n Simple_repeat Simple_repeat 1 46 0 2156 92 3 0 chr1 113866480 113866775 -128797578 - AluSp SINE Alu -17 296 1 426 302 45 56 chr1 113866782 113867050 -128797303 + HAL1 LINE L1 45 309 -2198 635 188 7 54 chr1 113867342 113867491 -128796862 + LTR40a LTR ERVL 376 517 -2 264 333 49 10 chr1 113867501 113867603 -128796750 - MIR SINE MIR -123 139 34 26 30 0 0 chr1 113868698 113868731 -128795622 + AT_rich Low_complexity Low_complexity 1 33 0 218 85 64 0 chr1 113868859 113868906 -128795447 + (TA)n Simple_repeat Simple_repeat 2 51 0 251 287 35 11 chr1 113868906 113868993 -128795360 + MER57B LTR ERV1 134 222 -212 577 240 61 25 chr1 113869007 113869203 -128795150 + MER93a LTR ERV1 200 402 0 590 261 17 6 chr1 113870320 113870496 -128793857 - L1MA4 LINE L1 -2 6298 6121 217 357 82 31 chr1 113870776 113870874 -128793479 - L2 LINE L2 -10 3262 3160 871 235 33 16 chr1 113871302 113871549 -128792804 - LTR33 LTR ERVL -2 519 259 783 175 10 88 chr1 113871657 113871851 -128792502 + MER20 DNA MER1_type 36 214 -5 278 370 10 0 chr1 113871860 113871960 -128792393 - LTR33 LTR ERVL -381 140 40 2202 100 3 28 chr1 113872281 113872600 -128791753 + AluSp SINE Alu 1 311 -2 37 55 0 33 chr1 113872605 113872696 -128791657 + AT_rich Low_complexity Low_complexity 1 88 0 19537 114 22 5 chr1 113873733 113874071 -128790282 - L1PA8 LINE L1 0 6172 5842 378 0 0 0 chr1 113874071 113874113 -128790240 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1947 110 4 0 chr1 113874113 113874376 -128789977 - AluSp SINE Alu -30 283 20 19537 114 22 5 chr1 113874376 113877900 -128786453 - L1PA8 LINE L1 -329 5843 2231 330 257 66 79 chr1 113878433 113878585 -128785768 - L2 LINE L2 -4 3309 3160 236 340 105 16 chr1 113878642 113878863 -128785490 - L2 LINE L2 -219 3053 2820 903 209 0 0 chr1 113879018 113879171 -128785182 + AluJb SINE Alu 142 294 -18 240 275 50 0 chr1 113879500 113879580 -128784773 + L1MC4 LINE L1 6617 6700 -1342 835 314 61 19 chr1 113879722 113880318 -128784035 - L1ME3A LINE L1 -215 5955 5338 1535 170 7 38 chr1 113880691 113880980 -128783373 - AluJo SINE Alu -32 280 1 2723 6 0 19 chr1 113881593 113881908 -128782445 - AluYa5 SINE Alu -2 309 1 816 310 70 21 chr1 113882399 113882773 -128781580 - MLT1I LTR MaLR -15 394 3 510 127 13 0 chr1 113883435 113883514 -128780839 + MADE1 DNA Mariner 1 80 0 569 67 49 48 chr1 113884177 113884424 -128779929 + (TA)n Simple_repeat Simple_repeat 1 247 0 2245 261 22 43 chr1 113884737 113885583 -128778770 + L1MD2 LINE L1 4016 4844 -1302 812 197 81 100 chr1 113885591 113885773 -128778580 + L1MD2 LINE L1 5084 5268 -898 261 0 0 0 chr1 113885773 113885802 -128778551 + (CA)n Simple_repeat Simple_repeat 1 29 0 812 197 81 100 chr1 113885802 113885936 -128778417 + L1MD2 LINE L1 5268 5403 -763 1254 50 0 6 chr1 113885936 113886097 -128778256 + L1PA4 LINE L1 5995 6154 -1 812 197 81 100 chr1 113886097 113886281 -128778072 + L1MD2 LINE L1 5403 5586 -580 380 294 63 8 chr1 113886298 113886424 -128777929 - FLAM_A SINE Alu 0 133 1 2028 279 85 19 chr1 113886424 113887142 -128777211 + L1MD2 LINE L1 5579 6343 -16 270 349 99 30 chr1 113889081 113889251 -128775102 + MIR SINE MIR 12 204 -58 453 81 0 0 chr1 113889251 113889313 -128775040 + (TA)n Simple_repeat Simple_repeat 1 62 0 270 349 99 30 chr1 113889313 113889374 -128774979 + MIR SINE MIR 204 259 -3 279 171 9 95 chr1 113889788 113889893 -128774460 - L1ME4a LINE L1 -225 5896 5801 494 274 70 19 chr1 113889920 113890077 -128774276 + MIR SINE MIR 96 260 -2 2734 10 3 0 chr1 113890332 113890641 -128773712 + AluYa5 SINE Alu 1 310 -1 21 82 0 0 chr1 113890682 113890731 -128773622 + AT_rich Low_complexity Low_complexity 1 49 0 265 300 22 33 chr1 113891163 113891253 -128773100 + MIR SINE MIR 42 130 -78 28 48 0 0 chr1 113891592 113891634 -128772719 + AT_rich Low_complexity Low_complexity 1 42 0 288 192 39 0 chr1 113892103 113892155 -128772198 - tRNA-Gly-GGA tRNA tRNA 0 75 22 32 0 0 0 chr1 113892425 113892457 -128771896 + AT_rich Low_complexity Low_complexity 1 32 0 324 0 0 0 chr1 113892574 113892610 -128771743 + (CA)n Simple_repeat Simple_repeat 1 36 0 519 176 32 26 chr1 113893310 113894252 -128770101 + (TA)n Simple_repeat Simple_repeat 1 947 0 26 74 0 0 chr1 113894300 113894354 -128769999 + AT_rich Low_complexity Low_complexity 1 54 0 1723 106 4 24 chr1 113895838 113896084 -128768269 + AluSq SINE Alu 20 260 -53 405 0 0 0 chr1 113896086 113896131 -128768222 + (CA)n Simple_repeat Simple_repeat 2 46 0 4499 220 28 25 chr1 113896341 113898262 -128766091 + L1PA12 LINE L1 2289 4222 -3362 1024 211 124 0 chr1 113898336 113898418 -128765935 + AluJb SINE Alu 39 109 -204 186 43 0 0 chr1 113898418 113898441 -128765912 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1024 211 124 0 chr1 113898441 113898606 -128765747 + AluJb SINE Alu 109 313 0 382 217 12 0 chr1 113898731 113898814 -128765539 - MER103 DNA DNA -77 89 6 213 180 40 0 chr1 113899117 113899167 -128765186 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 1839 168 0 0 chr1 113899250 113899548 -128764805 - AluSq SINE Alu -8 305 8 2119 117 0 0 chr1 113900936 113901235 -128763118 - AluSc SINE Alu -8 301 3 271 304 52 17 chr1 113903437 113903552 -128760801 - MIR SINE MIR -84 124 6 21 0 0 0 chr1 113904298 113904319 -128760034 + AT_rich Low_complexity Low_complexity 1 21 0 1697 156 0 61 chr1 113907126 113907634 -128756719 - AluSx SINE Alu 0 312 1 1829 248 74 51 chr1 113908328 113908880 -128755473 + MLT1E LTR MaLR 26 590 -3 232 230 200 30 chr1 113908957 113909057 -128755296 - L2 LINE L2 -8 3305 3189 555 269 18 85 chr1 113909177 113909400 -128754953 + MER63A DNA MER1_type 1 208 -2 237 413 29 0 chr1 113909401 113909573 -128754780 - L2 LINE L2 -226 3046 2870 260 296 14 0 chr1 113909628 113909699 -128754654 - L2 LINE L2 -41 3272 3201 398 302 56 0 chr1 113909876 113910002 -128754351 + MIR SINE MIR 120 252 -10 342 67 0 0 chr1 113910188 113910233 -128754120 + (A)n Simple_repeat Simple_repeat 1 45 0 291 360 37 19 chr1 113910358 113910519 -128753834 + L3 LINE CR1 1045 1208 -369 304 343 29 0 chr1 113910773 113910875 -128753478 + L2 LINE L2 3192 3296 -17 2067 93 0 31 chr1 113911076 113911365 -128752988 - AluSc SINE Alu -7 302 23 25 0 0 0 chr1 113911416 113911441 -128752912 + AT_rich Low_complexity Low_complexity 1 25 0 403 277 33 55 chr1 113912537 113912789 -128751564 + L1MEc LINE L1 556 766 -5304 * 869 288 38 32 chr1 113912783 113913183 -128751170 + L1ME2 LINE L1 5667 6068 -96 368 270 66 22 chr1 113913195 113913351 -128751002 - MER63 DNA MER1_type 0 1060 677 507 375 16 0 chr1 113913667 113913859 -128750494 + MIR SINE MIR 25 219 -43 28 61 0 0 chr1 113913994 113914043 -128750310 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr1 113914081 113914112 -128750241 + AT_rich Low_complexity Low_complexity 1 31 0 964 305 128 17 chr1 113914739 113915208 -128749145 + LTR33 LTR ERVL 1 521 0 2297 85 3 0 chr1 113915411 113915706 -128748647 + AluY SINE Alu 1 296 -15 22 56 0 0 chr1 113915735 113915771 -128748582 + AT_rich Low_complexity Low_complexity 1 36 0 952 319 52 22 chr1 113915895 113916498 -128747855 + L2 LINE L2 2669 3276 -37 777 272 74 42 chr1 113917046 113917355 -128746998 + LTR33A LTR ERVL 203 521 -2 2356 36 0 0 chr1 113917505 113917786 -128746567 + L1PA4 LINE L1 5874 6154 -1 411 138 0 15 chr1 113917971 113918036 -128746317 - MLT1C LTR MaLR 0 467 404 354 264 21 28 chr1 113918157 113918301 -128746052 + C-rich Low_complexity Low_complexity 6 148 0 575 167 0 0 chr1 113918323 113918431 -128745922 - L1P LINE L1 -2319 3827 3720 * 7378 64 41 1 chr1 113918430 113919857 -128744496 + L1P1 LINE L1 4357 5815 -340 832 326 91 26 chr1 113920638 113921068 -128743285 + L2 LINE L2 2856 3313 0 393 22 0 0 chr1 113921091 113921137 -128743216 + (CA)n Simple_repeat Simple_repeat 2 47 0 3284 76 18 0 chr1 113921430 113921469 -128742884 - MLT2A1 LTR ERVL 0 444 407 243 0 0 0 chr1 113921469 113921496 -128742857 + (CA)n Simple_repeat Simple_repeat 2 28 0 3284 76 18 0 chr1 113921496 113921892 -128742461 - MLT2A1 LTR ERVL -37 407 1 3308 110 16 2 chr1 113921899 113922388 -128741965 - HERVL-A1 LTR ERVL -8 5646 5151 2691 34 12 0 chr1 113922507 113922831 -128741522 + L1PA4 LINE L1 5827 6154 -1 2878 97 37 14 chr1 113924483 113924876 -128739477 + MLT2A1 LTR ERVL 1 406 -38 219 36 0 0 chr1 113924876 113924904 -128739449 + (TA)n Simple_repeat Simple_repeat 2 29 0 2878 97 37 14 chr1 113924904 113924944 -128739409 + MLT2A1 LTR ERVL 406 444 0 37498 76 8 4 chr1 113924947 113929785 -128734568 + HERVL-A1 LTR ERVL 2 4862 -792 32 43 0 0 chr1 113930064 113930110 -128734243 + AT_rich Low_complexity Low_complexity 1 46 0 194 250 66 53 chr1 113930721 113930797 -128733556 + L2 LINE L2 3231 3307 -6 37 90 0 0 chr1 113931371 113931471 -128732882 + AT_rich Low_complexity Low_complexity 1 100 0 37 23 0 0 chr1 113931922 113931966 -128732387 + AT_rich Low_complexity Low_complexity 1 44 0 255 331 55 55 chr1 113932013 113932140 -128732213 - MIR SINE MIR -63 145 19 30 0 0 0 chr1 113932239 113932269 -128732084 + AT_rich Low_complexity Low_complexity 1 30 0 2178 61 41 27 chr1 113932634 113932806 -128731547 - AluY SINE Alu -14 297 118 216 0 0 0 chr1 113932806 113932830 -128731523 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2178 61 41 27 chr1 113932830 113932950 -128731403 - AluY SINE Alu -193 118 1 195 42 0 0 chr1 113933066 113933090 -128731263 + (TG)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr1 113934251 113934280 -128730073 + AT_rich Low_complexity Low_complexity 1 29 0 2627 203 105 3 chr1 113934607 113935233 -128729120 - L1MB7 LINE L1 -31 6153 5464 690 261 61 37 chr1 113935492 113935737 -128728616 + MIR SINE MIR 12 262 0 3370 177 33 9 chr1 113936388 113937087 -128727266 + L1MB3 LINE L1 5461 6176 -7 291 114 0 0 chr1 113937405 113937449 -128726904 + (TA)n Simple_repeat Simple_repeat 1 44 0 1554 189 33 7 chr1 113939574 113939876 -128724477 - AluJb SINE Alu -1 311 2 696 204 102 78 chr1 113940068 113940133 -128724220 - MLT1B LTR MaLR -139 251 189 180 0 0 0 chr1 113940133 113940153 -128724200 + (GA)n Simple_repeat Simple_repeat 2 21 0 696 204 102 78 chr1 113940153 113940332 -128724021 - MLT1B LTR MaLR -201 189 1 224 124 56 22 chr1 113940809 113940898 -128723455 + (TA)n Simple_repeat Simple_repeat 2 93 0 23 33 0 0 chr1 113940940 113940970 -128723383 + AT_rich Low_complexity Low_complexity 1 30 0 375 311 41 0 chr1 113941486 113941608 -128722745 - MIR SINE MIR -65 197 71 26 0 0 0 chr1 113941896 113941922 -128722431 + AT_rich Low_complexity Low_complexity 1 26 0 2900 3 0 0 chr1 113941922 113942233 -128722120 + AluYa5 SINE Alu 1 311 0 29 84 0 0 chr1 113942358 113942429 -128721924 + AT_rich Low_complexity Low_complexity 1 71 0 1370 103 149 89 chr1 113942540 113942822 -128721531 - AluSg SINE Alu -11 299 1 22 35 0 0 chr1 113943405 113943434 -128720919 + AT_rich Low_complexity Low_complexity 1 29 0 6678 76 16 0 chr1 113943693 113945143 -128719210 - L1PA7 LINE L1 -4 6150 4687 1110 100 0 0 chr1 113945407 113945547 -128718806 + AluSq/x SINE Alu 1 140 -173 21 0 0 0 chr1 113946060 113946081 -128718272 + AT_rich Low_complexity Low_complexity 1 21 0 2573 11 0 11 chr1 113946101 113946387 -128717966 - AluYa5 SINE Alu -7 304 22 282 304 80 9 chr1 113946854 113946966 -128717387 + L2 LINE L2 3141 3260 -12 195 162 0 0 chr1 113947108 113947145 -128717208 + (TA)n Simple_repeat Simple_repeat 1 37 0 28 0 0 0 chr1 113947173 113947201 -128717152 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 113947464 113947487 -128716866 + AT_rich Low_complexity Low_complexity 1 23 0 207 341 110 46 chr1 113949173 113949501 -128714852 + L2 LINE L2 1455 1803 -1511 21 57 0 0 chr1 113949996 113950031 -128714322 + AT_rich Low_complexity Low_complexity 1 35 0 502 194 52 93 chr1 113950055 113950303 -128714050 - L1MC5 LINE L1 -105 7856 7619 23 54 0 0 chr1 113950454 113950491 -128713862 + AT_rich Low_complexity Low_complexity 1 37 0 7938 48 3 0 chr1 113950574 113952322 -128712031 - L1PA5 LINE L1 -11 6143 4390 494 317 141 16 chr1 113952347 113952722 -128711631 - MLT1L LTR MaLR -7 608 187 529 354 111 53 chr1 113952761 113953110 -128711243 + L2 LINE L2 2278 2605 -709 522 0 0 0 chr1 113953110 113953168 -128711185 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 2006 124 0 7 chr1 113953171 113953454 -128710899 - AluSx SINE Alu -31 281 1 529 354 111 53 chr1 113953454 113953758 -128710595 + L2 LINE L2 2606 2973 -341 2312 137 56 8 chr1 113953943 113954093 -128710260 + MSTA LTR MaLR 53 194 -234 372 22 0 0 chr1 113954093 113954138 -128710215 + (TC)n Simple_repeat Simple_repeat 1 45 0 2312 137 56 8 chr1 113954138 113954346 -128710007 + MSTA LTR MaLR 194 428 0 196 352 0 11 chr1 113954488 113954576 -128709777 - MIR SINE MIR -28 234 148 1797 155 90 12 chr1 113955879 113956214 -128708139 - MLT1A1 LTR MaLR -4 361 1 21 57 0 0 chr1 113956469 113956504 -128707849 + AT_rich Low_complexity Low_complexity 1 35 0 329 306 12 0 chr1 113957986 113958071 -128706282 - L2 LINE L2 -1 3312 3227 217 245 20 0 chr1 113958690 113958739 -128705614 + MIR SINE MIR 99 148 -60 368 312 80 0 chr1 113959287 113959412 -128704941 - L2 LINE L2 0 3272 3138 685 65 19 0 chr1 113960647 113960755 -128703598 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 393 303 123 24 chr1 113960756 113960967 -128703386 - LTR16C LTR ERVL -99 392 161 224 294 103 48 chr1 113962664 113962810 -128701543 + L2 LINE L2 2554 2707 -607 271 391 85 19 chr1 113963163 113963421 -128700932 - L2 LINE L2 -665 2649 2375 364 299 179 30 chr1 113963501 113963735 -128700618 + MLT1K LTR MaLR 34 302 -286 275 302 123 6 chr1 113963765 113963944 -128700409 + MLT1K LTR MaLR 377 576 -12 1417 178 22 67 chr1 113964473 113964787 -128699566 - MER7A DNA MER2_type -48 298 1 254 314 14 0 chr1 113967714 113967784 -128696569 - MIR SINE MIR -21 241 171 217 224 0 0 chr1 113967993 113968042 -128696311 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 233 197 16 0 chr1 113970372 113970433 -128693920 + GA-rich Low_complexity Low_complexity 3 64 0 302 284 74 102 chr1 113970609 113970785 -128693568 + LTR67 LTR ERVL 20 190 -367 192 97 0 0 chr1 113970805 113970836 -128693517 + (TC)n Simple_repeat Simple_repeat 2 32 0 268 264 77 0 chr1 113970888 113970979 -128693374 - L1MEd LINE L1 -5404 715 618 754 239 140 28 chr1 113971425 113971825 -128692528 - L1ME LINE L1 -464 5698 5238 1177 305 109 18 chr1 113971990 113973260 -128691093 - L1ME LINE L1 -1156 4990 3606 339 85 0 0 chr1 113973260 113973307 -128691046 + (TTC)n Simple_repeat Simple_repeat 1 47 0 300 317 67 38 chr1 113973307 113973326 -128691027 - L1ME LINE L1 -2528 3618 3601 225 0 0 0 chr1 113973326 113973351 -128691002 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 300 317 67 38 chr1 113973351 113973672 -128690681 - L1ME LINE L1 -2545 3601 3268 2285 157 28 28 chr1 113973704 113974136 -128690217 + MSTB1 LTR MaLR 1 432 0 5989 249 59 10 chr1 113974136 113975705 -128688648 + MSTB1-int LTR MaLR 5 1651 0 2128 166 35 44 chr1 113975705 113976139 -128688214 + MSTB1 LTR MaLR 1 430 -2 578 319 100 20 chr1 113976159 113976648 -128687705 - L1ME LINE L1 -3350 2796 2269 233 276 61 0 chr1 113977182 113977280 -128687073 + L1MC4a LINE L1 6267 6370 -1438 369 166 23 29 chr1 113977696 113977871 -128686482 + (TA)n Simple_repeat Simple_repeat 1 174 0 201 334 90 69 chr1 113977873 113978250 -128686103 - L2 LINE L2 -1697 1617 1233 435 264 196 7 chr1 113978579 113978727 -128685626 - MER5A DNA MER1_type 0 189 14 249 192 0 0 chr1 113980574 113980626 -128683727 - L1MC4 LINE L1 -1339 6703 6652 * 276 164 0 135 chr1 113980612 113980716 -128683637 + L1MC4 LINE L1 6614 6703 -1339 * 294 250 0 22 chr1 113980626 113980718 -128683635 - L1MC4 LINE L1 -1339 6703 6614 41 66 0 0 chr1 113980975 113981051 -128683302 + AT_rich Low_complexity Low_complexity 1 76 0 212 276 35 0 chr1 113981627 113981714 -128682639 + A-rich Low_complexity Low_complexity 1 90 0 328 279 36 27 chr1 113982367 113982478 -128681875 - L2 LINE L2 -9 3304 3193 1417 190 44 39 chr1 113982529 113982677 -128681676 - L1MB8 LINE L1 0 6178 6032 2136 102 0 10 chr1 113982677 113982996 -128681357 + AluSx SINE Alu 1 312 0 1417 190 44 39 chr1 113982996 113983210 -128681143 - L1MB8 LINE L1 -146 6032 5814 21 0 0 0 chr1 113983438 113983459 -128680894 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 113983966 113983989 -128680364 + AT_rich Low_complexity Low_complexity 1 23 0 40 21 0 0 chr1 113984449 113984496 -128679857 + AT_rich Low_complexity Low_complexity 1 47 0 2047 150 16 22 chr1 113985404 113985770 -128678583 + THE1B LTR MaLR 1 364 0 9730 95 98 6 chr1 113985770 113987215 -128677138 + THE1A-int LTR MaLR 1 1579 -1 2516 89 23 6 chr1 113987216 113987565 -128676788 + THE1A LTR MaLR 1 355 0 258 245 51 61 chr1 113987592 113987641 -128676712 - MER94 DNA DNA -35 99 51 2010 151 99 30 chr1 113987641 113988045 -128676308 - MSTB1 LTR MaLR 0 432 1 258 245 51 61 chr1 113988045 113988093 -128676260 - MER94 DNA DNA -83 51 3 984 159 8 95 chr1 113988327 113988579 -128675774 - L1MA9 LINE L1 -6 6306 6077 225 277 106 71 chr1 113988786 113988927 -128675426 + MLT1K LTR MaLR 202 347 -241 852 206 0 92 chr1 113989049 113989287 -128675066 + MER20 DNA MER1_type 2 217 -2 703 278 142 42 chr1 113989414 113989513 -128674840 + L2 LINE L2 2702 2790 -523 1026 250 103 10 chr1 113989513 113989825 -128674528 - MER58B DNA MER1_type 0 341 1 703 278 142 42 chr1 113989825 113990277 -128674076 + L2 LINE L2 2790 3313 0 640 311 45 53 chr1 113990594 113990974 -128673379 + LTR16A1 LTR ERVL 66 442 -15 4602 203 84 19 chr1 113991264 113992414 -128671939 + L1MC3 LINE L1 6554 7778 -7 340 320 8 31 chr1 113992992 113993120 -128671233 + L2 LINE L2 3186 3310 -3 235 254 0 16 chr1 113993155 113993218 -128671135 + L2 LINE L2 2760 2821 -493 27 49 0 0 chr1 113994188 113994229 -128670124 + AT_rich Low_complexity Low_complexity 1 41 0 271 277 179 27 chr1 113994913 113995025 -128669328 - L2 LINE L2 -3 3269 3141 195 356 52 26 chr1 113995195 113995310 -128669043 - MIR SINE MIR -125 137 20 803 270 70 4 chr1 113995452 113995693 -128668660 + MIR SINE MIR 6 262 0 22 56 0 0 chr1 113995916 113995952 -128668401 + AT_rich Low_complexity Low_complexity 1 36 0 201 327 73 47 chr1 113997153 113997303 -128667050 + MER5A DNA MER1_type 13 166 -23 * 374 280 11 0 chr1 113997235 113997328 -128667025 - MER5A DNA MER1_type -86 103 10 23 0 0 0 chr1 113997692 113997715 -128666638 + AT_rich Low_complexity Low_complexity 1 23 0 515 355 6 33 chr1 113998041 113998224 -128666129 - MIR3 SINE MIR -21 187 10 26 0 0 0 chr1 113999893 113999919 -128664434 + AT_rich Low_complexity Low_complexity 1 26 0 671 173 115 13 chr1 114000051 114000207 -128664146 - MLT1C LTR MaLR -292 175 4 2069 140 90 18 chr1 114000324 114000723 -128663630 + MSTA LTR MaLR 1 428 0 23 33 0 0 chr1 114000938 114000968 -128663385 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr1 114001206 114001254 -128663099 + AT_rich Low_complexity Low_complexity 1 48 0 995 188 140 41 chr1 114001629 114001900 -128662453 + MLT1C LTR MaLR 170 467 0 2090 209 13 39 chr1 114001900 114002446 -128661907 + L1ME1 LINE L1 5630 6161 -5 21 36 0 0 chr1 114003544 114003572 -128660781 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr1 114004727 114004754 -128659599 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 181 308 0 0 chr1 114005902 114005954 -128658399 + L2 LINE L2 3219 3270 -2 506 286 39 22 chr1 114006637 114006815 -128657538 + MER5A DNA MER1_type 1 181 -8 789 350 115 44 chr1 114007809 114008739 -128655614 - L2 LINE L2 -447 2867 1872 22 0 0 0 chr1 114010037 114010059 -128654294 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr1 114010149 114010192 -128654161 + AT_rich Low_complexity Low_complexity 1 43 0 459 254 8 8 chr1 114010412 114010538 -128653815 + L2 LINE L2 3188 3313 0 273 267 23 76 chr1 114010689 114010820 -128653533 - MIR SINE MIR -19 243 120 5106 43 2 0 chr1 114010896 114011527 -128652826 - L1P LINE L1 -1795 4351 3720 2102 135 33 61 chr1 114213728 114213957 -128450396 - L1MB2 LINE L1 0 6171 5956 1285 167 106 7 chr1 114213957 114214232 -128450121 - AluJo SINE Alu -10 302 1 2102 135 33 61 chr1 114214232 114214394 -128449959 - L1MB2 LINE L1 -215 5956 5791 1779 149 3 23 chr1 114214580 114214752 -128449601 - AluJb SINE Alu -9 303 129 1449 181 3 24 chr1 114214752 114215050 -128449303 - AluSc SINE Alu -17 292 1 2141 89 0 10 chr1 114215051 114215344 -128449009 - AluY SINE Alu -21 290 1 1779 149 3 23 chr1 114215344 114215477 -128448876 - AluJb SINE Alu -182 130 2 336 309 42 60 chr1 114215580 114215604 -128448749 + L1MD3 LINE L1 7817 7840 -155 779 197 0 0 chr1 114215604 114215731 -128448622 - FLAM_C SINE Alu -2 131 5 336 309 42 60 chr1 114215731 114215874 -128448479 + L1MD3 LINE L1 7840 7981 -14 1967 117 3 3 chr1 114215888 114216194 -128448159 + AluSx SINE Alu 1 306 0 2068 105 0 20 chr1 114216246 114216550 -128447803 + AluSx SINE Alu 1 298 -14 2656 82 57 138 chr1 114216999 114217490 -128446863 + MLT2A2 LTR ERVL 3 453 0 767 111 85 136 chr1 114217992 114218105 -128446248 - Tigger1 DNA MER2_type 0 2418 2318 1765 127 7 33 chr1 114218105 114218404 -128445949 + AluJb SINE Alu 3 293 -19 767 111 85 136 chr1 114218404 114218489 -128445864 - Tigger1 DNA MER2_type -100 2318 2230 536 86 0 0 chr1 114218694 114218764 -128445589 - AluJ/FRAM SINE Alu -25 287 218 2137 101 0 16 chr1 114218875 114219191 -128445162 + AluSx SINE Alu 1 311 -1 2018 110 3 19 chr1 114219922 114220239 -128444114 - AluSx SINE Alu 0 312 1 1711 138 3 72 chr1 114220255 114220442 -128443911 - AluJo SINE Alu -1 311 155 2248 80 0 10 chr1 114220442 114220743 -128443610 - AluSg SINE Alu -12 298 1 1711 138 3 72 chr1 114220743 114220889 -128443464 - AluJo SINE Alu -157 155 1 1954 142 7 3 chr1 114221275 114221585 -128442768 - AluSx SINE Alu -1 311 1 1960 113 23 19 chr1 114222375 114222684 -128441669 - AluSq SINE Alu -3 310 1 279 0 0 0 chr1 114223140 114223171 -128441182 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1656 139 0 0 chr1 114223172 114223417 -128440936 - AluSx SINE Alu -25 287 43 2444 55 3 7 chr1 114224087 114224397 -128439956 + AluY SINE Alu 1 309 -2 350 135 0 0 chr1 114225043 114225095 -128439258 + Alu SINE Alu 1 52 -248 1530 143 3 98 chr1 114225095 114225423 -128438930 + AluJb SINE Alu 4 300 -12 420 265 199 6 chr1 114225426 114225607 -128438746 + MIR SINE MIR 25 240 -22 1608 182 7 7 chr1 114226283 114226580 -128437773 - AluJo SINE Alu -15 297 1 302 237 40 0 chr1 114226604 114226680 -128437673 + L2 LINE L2 3226 3304 -9 414 249 169 68 chr1 114227136 114227373 -128436980 + MIR SINE MIR 2 262 0 1569 172 28 11 chr1 114227553 114227838 -128436515 - AluJb SINE Alu -22 290 1 754 192 0 8 chr1 114227843 114227973 -128436380 - FLAM_A SINE Alu -4 129 1 1741 168 32 45 chr1 114227987 114228017 -128436336 - L1MB7 LINE L1 -41 6143 6114 2001 123 7 3 chr1 114228017 114228309 -128436044 + AluSc SINE Alu 1 293 -16 1741 168 32 45 chr1 114228309 114228653 -128435700 - L1MB7 LINE L1 -70 6114 5774 4972 82 36 10 chr1 114229955 114230629 -128433724 + LTR8 LTR ERV1 1 691 0 2039 95 20 10 chr1 114231078 114231373 -128432980 + AluSx SINE Alu 1 298 -14 251 309 72 10 chr1 114232004 114232101 -128432252 - L3 LINE CR1 -185 1392 1290 563 106 0 0 chr1 114232122 114232207 -128432146 - AluJ/FRAM SINE Alu 0 312 228 2135 99 0 7 chr1 114232313 114232607 -128431746 + AluSx SINE Alu 1 292 -20 279 300 20 21 chr1 114233076 114233183 -128431170 - MIR SINE MIR -88 120 35 309 241 135 68 chr1 114233610 114233806 -128430547 - MIR SINE MIR -43 219 4 216 67 0 0 chr1 114233852 114233882 -128430471 + (TCCCC)n Simple_repeat Simple_repeat 2 31 0 1386 111 5 0 chr1 114234317 114234506 -128429847 - AluSp SINE Alu -15 298 109 804 113 17 9 chr1 114234583 114234698 -128429655 - AluSq/x SINE Alu -195 117 2 1189 116 11 11 chr1 114236301 114236491 -128427862 - AluSg/x SINE Alu -14 298 109 2043 75 14 17 chr1 114236905 114237198 -128427155 + AluSc SINE Alu 1 292 -17 428 290 124 6 chr1 114240429 114240598 -128423755 - MIR3 SINE MIR 0 208 20 2088 136 0 3 chr1 114240962 114241271 -128423082 - AluSx SINE Alu -2 310 3 1635 167 0 17 chr1 114241308 114241596 -128422757 + AluSx SINE Alu 11 293 -19 1505 143 24 125 chr1 114241602 114241938 -128422415 + AluJb SINE Alu 1 302 0 354 237 0 105 chr1 114241938 114242052 -128422301 - MER45 DNA AcHobo -76 102 1 633 282 6 18 chr1 114242762 114242932 -128421421 + MER5B DNA MER1_type 5 172 -6 295 309 63 17 chr1 114243091 114243266 -128421087 + MLT1L LTR MaLR 91 273 -342 1800 128 0 92 chr1 114243316 114243644 -128420709 - AluSx SINE Alu -9 303 6 1339 157 63 42 chr1 114243649 114243935 -128420418 - AluJb SINE Alu -20 292 1 572 216 99 6 chr1 114244111 114244208 -128420145 - MER5B DNA MER1_type 0 178 91 2140 107 0 3 chr1 114244208 114244506 -128419847 - AluSx SINE Alu -15 297 1 572 216 99 6 chr1 114244506 114244570 -128419783 - MER5B DNA MER1_type -87 91 2 210 278 111 0 chr1 114244635 114244707 -128419646 - L2 LINE L2 -217 3055 2976 2212 102 0 6 chr1 114244891 114245205 -128419148 - AluSq SINE Alu -1 312 1 1947 122 0 48 chr1 114245208 114245520 -128418833 - AluSx SINE Alu -15 297 1 1459 199 0 44 chr1 114245523 114245839 -128418514 - AluJb SINE Alu -10 302 1 290 65 0 22 chr1 114246408 114246454 -128417899 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 217 254 75 15 chr1 114246622 114246689 -128417664 - L2 LINE L2 -2 3270 3200 1053 141 5 26 chr1 114246691 114246883 -128417470 - AluJb SINE Alu -11 301 114 210 347 82 14 chr1 114246996 114247143 -128417210 - L2 LINE L2 -173 3099 2943 3971 88 41 6 chr1 114247183 114247718 -128416635 + MER41A LTR ERV1 1 554 0 211 217 83 0 chr1 114247830 114247890 -128416463 + MIR SINE MIR 198 262 0 2396 52 3 7 chr1 114248617 114248924 -128415429 - AluY SINE Alu -5 306 1 550 147 116 11 chr1 114249282 114249377 -128414976 - AluJb SINE Alu -206 106 2 539 335 117 26 chr1 114249465 114249817 -128414536 - L1ME4a LINE L1 -217 5904 5519 198 360 78 45 chr1 114249956 114250198 -128414155 + L3 LINE CR1 920 1169 -408 290 253 247 25 chr1 114250894 114251052 -128413301 - MIR SINE MIR -50 212 20 199 293 141 10 chr1 114251424 114251523 -128412830 + MIR SINE MIR 34 145 -117 221 225 0 0 chr1 114254551 114254591 -128409762 + polypyrimidine Low_complexity Low_complexity 3 42 0 489 239 267 17 chr1 114259329 114259505 -128404848 + MIR SINE MIR 43 262 0 234 0 0 0 chr1 114259538 114259564 -128404789 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1846 119 0 37 chr1 114259566 114259860 -128404493 - AluSx SINE Alu -29 283 1 2121 92 0 26 chr1 114260391 114260696 -128403657 + AluY SINE Alu 1 297 -14 872 222 3 19 chr1 114261260 114261512 -128402841 - AluSx SINE Alu -82 230 1 673 185 0 8 chr1 114261512 114261631 -128402722 - AluJo/FLAM SINE Alu -184 118 1 1988 126 20 0 chr1 114261643 114261813 -128402540 - AluSx SINE Alu -13 299 119 266 71 0 24 chr1 114261813 114261855 -128402498 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1988 126 20 0 chr1 114261855 114261977 -128402376 - AluSx SINE Alu -193 119 1 1241 176 69 4 chr1 114261979 114262241 -128402112 - Tigger1 DNA MER2_type -826 1592 1314 748 172 26 33 chr1 114262244 114262395 -128401958 + AluSg/x SINE Alu 120 269 -43 6837 118 13 56 chr1 114262401 114263092 -128401261 - Tigger1 DNA MER2_type -1129 1289 570 1530 138 0 4 chr1 114263092 114263323 -128401030 - AluSg/x SINE Alu -10 302 73 2132 93 10 3 chr1 114263332 114263621 -128400732 - AluSq SINE Alu -22 291 1 6837 118 13 56 chr1 114263621 114263783 -128400570 - Tigger1 DNA MER2_type -1856 562 395 1720 165 9 22 chr1 114263783 114264099 -128400254 - AluJb SINE Alu 0 312 1 6837 118 13 56 chr1 114264099 114264281 -128400072 - Tigger1 DNA MER2_type -2023 395 207 2017 110 7 13 chr1 114264281 114264581 -128399772 - AluSx SINE Alu -14 298 1 6837 118 13 56 chr1 114264581 114264803 -128399550 - Tigger1 DNA MER2_type -2211 207 77 2065 127 0 10 chr1 114264803 114265110 -128399243 - AluSx SINE Alu -8 304 1 6837 118 13 56 chr1 114265110 114265159 -128399194 - Tigger1 DNA MER2_type -2341 77 27 183 277 0 0 chr1 114266876 114266923 -128397430 + MIR SINE MIR 76 122 -86 2152 105 0 13 chr1 114267263 114267569 -128396784 - AluSx SINE Alu -10 302 1 183 221 279 19 chr1 114269491 114269595 -128394758 + MIR3 SINE MIR 11 141 -67 2111 171 24 11 chr1 114270060 114270441 -128393912 + MLT1B LTR MaLR 1 386 -4 193 326 0 0 chr1 114270946 114270995 -128393358 + MER5A DNA MER1_type 28 76 -113 1673 153 56 3 chr1 114271412 114271700 -128392653 - AluJo SINE Alu -9 303 1 2195 99 3 10 chr1 114272003 114272317 -128392036 + AluSx SINE Alu 1 312 0 1029 166 23 0 chr1 114272317 114272492 -128391861 + AluSg/x SINE Alu 132 310 0 570 218 53 8 chr1 114272869 114273002 -128391351 + FLAM_C SINE Alu 4 142 -1 829 181 0 0 chr1 114273100 114273233 -128391120 + FLAM_C SINE Alu 1 133 0 633 310 158 3 chr1 114273861 114274366 -128389987 - L2 LINE L2 -18 3295 2714 443 134 61 0 chr1 114274550 114274632 -128389721 - L1M3 LINE L1 -408 5775 5689 2137 102 0 0 chr1 114274689 114275000 -128389353 - AluSx SINE Alu 0 311 1 266 322 11 0 chr1 114277958 114278045 -128386308 + MIR SINE MIR 58 145 -117 2016 109 0 17 chr1 114278169 114278501 -128385852 - AluSx SINE Alu 0 312 1 1838 123 21 7 chr1 114278503 114278788 -128385565 - AluJo SINE Alu -23 289 1 375 60 0 0 chr1 114280094 114280144 -128384209 + (TG)n Simple_repeat Simple_repeat 2 51 0 546 286 26 39 chr1 114281127 114281361 -128382992 + L2 LINE L2 3042 3272 0 358 217 279 0 chr1 114284865 114284994 -128379359 - MIR3 SINE MIR -7 201 37 2436 57 0 3 chr1 114285005 114285304 -128379049 - AluY SINE Alu -13 298 1 2053 118 3 13 chr1 114285646 114285950 -128378403 - AluSx SINE Alu -11 301 1 2091 82 3 57 chr1 114286053 114286369 -128377984 - AluSp SINE Alu -14 299 1 1263 161 0 40 chr1 114286416 114286640 -128377713 - AluJb SINE Alu -30 282 68 7082 128 123 43 chr1 114286643 114287269 -128377084 - pTR5 LTR ERV1 0 2438 1864 3640 47 2 7 chr1 114287269 114287719 -128376634 + LTR7 LTR ERV1 1 448 -2 7082 128 123 43 chr1 114287719 114288656 -128375697 - pTR5 LTR ERV1 -574 1864 749 455 136 0 0 chr1 114288656 114288722 -128375631 - AluJb SINE Alu -235 77 12 328 304 26 43 chr1 114288775 114288890 -128375463 - MIR3 SINE MIR -90 118 6 350 259 67 44 chr1 114289199 114289334 -128375019 + L1ME LINE L1 5502 5639 -482 2098 115 0 3 chr1 114289412 114289698 -128374655 - AluSx SINE Alu -15 297 13 648 230 148 5 chr1 114289721 114289930 -128374423 + MER58B DNA MER1_type 79 317 -24 242 246 43 72 chr1 114289952 114289985 -128374368 + L1ME LINE L1 5663 5695 -475 1746 161 6 25 chr1 114289985 114290164 -128374189 - AluJb SINE Alu -1 311 139 2276 111 0 0 chr1 114290164 114290470 -128373883 - AluSx SINE Alu -6 306 1 1746 161 6 25 chr1 114290470 114290607 -128373746 - AluJb SINE Alu -173 139 1 242 246 43 72 chr1 114290607 114290711 -128373642 + L1ME LINE L1 5695 5796 -374 205 188 0 0 chr1 114290796 114290828 -128373525 + L2 LINE L2 3242 3273 -40 1607 172 0 18 chr1 114290929 114291214 -128373139 + AluJo SINE Alu 1 280 -32 216 0 0 0 chr1 114291220 114291244 -128373109 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 620 154 56 62 chr1 114291251 114291551 -128372802 + MSTA LTR MaLR 3 403 -25 2064 102 7 7 chr1 114291751 114292045 -128372308 + AluSg SINE Alu 1 294 -16 261 0 0 0 chr1 114292731 114292760 -128371593 + (CA)n Simple_repeat Simple_repeat 1 29 0 2337 94 0 0 chr1 114293635 114293934 -128370419 + AluSq SINE Alu 1 299 -14 476 348 102 12 chr1 114294015 114294348 -128370005 - L2 LINE L2 0 3272 2910 2103 127 0 3 chr1 114294353 114294653 -128369700 + AluSx SINE Alu 1 299 -13 1815 158 30 7 chr1 114294915 114295213 -128369140 + AluJb SINE Alu 1 305 -7 251 53 0 26 chr1 114295230 114295268 -128369085 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 357 368 58 27 chr1 114295277 114295500 -128368853 + L1 LINE L1 3073 3302 -2844 241 226 198 9 chr1 114295508 114295614 -128368739 + MIR3 SINE MIR 65 190 -18 885 137 0 0 chr1 114296176 114296300 -128368053 - FLAM_C SINE Alu -19 124 1 549 203 59 0 chr1 114296771 114296889 -128367464 + MIR3 SINE MIR 72 196 -12 266 333 19 45 chr1 114297372 114297528 -128366825 - L2 LINE L2 -208 3064 2913 1222 111 0 0 chr1 114297752 114297924 -128366429 - AluSq SINE Alu -11 302 131 1900 129 0 7 chr1 114297933 114298219 -128366134 - AluSg SINE Alu -5 305 22 1104 103 0 7 chr1 114298268 114298423 -128365930 - AluSx SINE Alu -156 156 3 2287 98 0 3 chr1 114298424 114298731 -128365622 - AluSx SINE Alu -2 310 5 399 325 115 61 chr1 114298844 114299164 -128365189 - L2 LINE L2 -788 2526 2225 1649 158 30 7 chr1 114299164 114299461 -128364892 + AluJo SINE Alu 1 304 -8 399 325 115 61 chr1 114299461 114299799 -128364554 - L2 LINE L2 -1089 2225 1832 1164 98 0 25 chr1 114299803 114299966 -128364387 + AluSg/x SINE Alu 136 294 -16 330 282 195 0 chr1 114300323 114300472 -128363881 - MIR SINE MIR -65 197 20 190 102 0 41 chr1 114300769 114300818 -128363535 + (CA)n Simple_repeat Simple_repeat 2 48 0 184 338 32 84 chr1 114300979 114301133 -128363220 - L2 LINE L2 -49 3223 3078 206 333 53 61 chr1 114301915 114302029 -128362324 - L2 LINE L2 -24 3248 3136 678 168 0 30 chr1 114302986 114303117 -128361236 + AluJo/FLAM SINE Alu 5 131 -171 2058 87 3 20 chr1 114303117 114303415 -128360938 - AluSq SINE Alu -20 293 1 1914 124 28 7 chr1 114303415 114303706 -128360647 - AluSx SINE Alu -15 297 1 183 80 0 0 chr1 114305234 114305259 -128359094 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2127 108 7 0 chr1 114305314 114305609 -128358744 + AluSx SINE Alu 1 297 -15 228 289 22 33 chr1 114305860 114305950 -128358403 + L2 LINE L2 3003 3091 -181 184 178 44 22 chr1 114306127 114306172 -128358181 + L2 LINE L2 1158 1203 -2111 2433 66 3 0 chr1 114306432 114306733 -128357620 - AluSq SINE Alu -11 302 1 292 288 8 80 chr1 114306735 114306860 -128357493 + MIR SINE MIR 92 207 -55 2398 86 0 3 chr1 114307428 114307741 -128356612 - AluSx SINE Alu 0 312 1 1894 148 0 23 chr1 114308556 114308866 -128355487 + AluJb SINE Alu 1 303 -9 1673 128 0 61 chr1 114308886 114309182 -128355171 + AluSx SINE Alu 18 295 -17 353 128 234 32 chr1 114312787 114312881 -128351472 + MIR SINE MIR 120 232 -30 3601 190 43 6 chr1 114362930 114363952 -128300401 + L1P5 LINE L1 4466 5535 -619 476 127 0 0 chr1 114364053 114364124 -128300229 - AluS SINE Alu -236 74 4 42836 31 21 1 chr1 114364181 114370213 -128294140 + L1HS LINE L1 1 6155 0 310 36 36 36 chr1 114370215 114370271 -128294082 + (TAAAAA)n Simple_repeat Simple_repeat 4 59 0 221 164 0 18 chr1 114370565 114370620 -128293733 + (TA)n Simple_repeat Simple_repeat 2 55 0 238 194 0 45 chr1 114370654 114370721 -128293632 + L1MC4 LINE L1 6640 6703 -1339 26 30 0 0 chr1 114370887 114370920 -128293433 + AT_rich Low_complexity Low_complexity 1 33 0 1033 184 47 47 chr1 114371036 114371270 -128293083 - AluJo SINE Alu -76 236 3 7587 132 19 15 chr1 114372309 114372543 -128291810 + HSMAR1 DNA Mariner 102 334 -953 2190 107 3 0 chr1 114372543 114372852 -128291501 + AluY SINE Alu 2 311 0 7587 132 19 15 chr1 114372852 114373799 -128290554 + HSMAR1 DNA Mariner 334 1287 0 2042 151 46 0 chr1 114374490 114374835 -128289518 - MER46B DNA MER2_type 0 236 1 303 28 0 0 chr1 114377816 114377852 -128286501 + (CA)n Simple_repeat Simple_repeat 2 37 0 185 351 137 0 chr1 114378313 114378444 -128285909 - L2 LINE L2 -891 2423 2275 181 253 177 13 chr1 114380817 114380896 -128283457 - L2 LINE L2 -3035 279 188 234 221 39 71 chr1 114381512 114381639 -128282714 - L1M LINE L1 -741 5421 5296 2440 102 14 32 chr1 114381651 114382022 -128282331 + THE1B LTR MaLR 1 364 0 501 280 64 30 chr1 114382037 114382301 -128282052 - HAL1 LINE L1 -664 1843 1571 329 308 60 27 chr1 114382575 114382760 -128281593 + MLT1L LTR MaLR 425 615 0 1481 95 0 0 chr1 114383143 114383333 -128281020 - AluSc SINE Alu -17 292 103 2357 71 13 7 chr1 114383469 114383778 -128280575 - AluY SINE Alu 0 311 1 249 123 247 0 chr1 114384694 114384767 -128279586 - AluSc SINE Alu -6 293 203 327 279 50 68 chr1 114386053 114386272 -128278081 + L1MEd LINE L1 256 470 -5902 212 171 0 0 chr1 114387000 114387041 -128277312 + A-rich Low_complexity Low_complexity 1 41 0 316 291 18 14 chr1 114387687 114387864 -128276489 + L1MEd LINE L1 1618 1708 -4676 3706 220 50 49 chr1 114390803 114391016 -128273337 - MER45B DNA AcHobo -557 1024 813 1620 183 11 14 chr1 114391016 114391301 -128273052 - AluJb SINE Alu -28 284 1 3706 220 50 49 chr1 114391301 114392110 -128272243 - MER45B DNA AcHobo -768 813 1 1904 119 0 54 chr1 114392312 114392607 -128271746 + AluSx SINE Alu 1 279 -33 21 36 0 0 chr1 114392607 114392635 -128271718 + AT_rich Low_complexity Low_complexity 1 28 0 1565 209 16 73 chr1 114392675 114393167 -128271186 + L1MA9 LINE L1 5810 6273 -39 21 57 0 0 chr1 114394127 114394162 -128270191 + AT_rich Low_complexity Low_complexity 1 35 0 1032 197 131 27 chr1 114394162 114394421 -128269932 - AluJb SINE Alu -16 286 1 313 319 50 34 chr1 114394455 114394693 -128269660 - ERVL LTR ERVL -1718 4046 3805 362 367 50 38 chr1 114395925 114396342 -128268011 + L1MEd LINE L1 2027 2448 -4115 444 300 164 11 chr1 114396349 114396873 -128267480 + L1MEd LINE L1 2346 2949 -3433 960 300 73 41 chr1 114396925 114397431 -128266922 + L1MEd LINE L1 3049 3537 -2845 1642 192 0 7 chr1 114397431 114397717 -128266636 + AluJb SINE Alu 3 286 -26 960 300 73 41 chr1 114397717 114398465 -128265888 + L1MEd LINE L1 3537 4343 -2039 243 363 35 29 chr1 114399068 114399239 -128265114 - L2 LINE L2 -919 2395 2224 3124 220 21 28 chr1 114399918 114400667 -128263686 - Tigger6a DNA MER2_type -338 745 2 852 268 118 50 chr1 114400671 114400805 -128263548 - MLT1F LTR MaLR -69 473 350 2606 98 3 11 chr1 114400805 114401183 -128263170 + THE1C LTR MaLR 1 375 0 852 268 118 50 chr1 114401183 114401428 -128262925 - MLT1F LTR MaLR -192 350 68 26 0 0 0 chr1 114401558 114401584 -128262769 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 114402870 114402891 -128261462 + AT_rich Low_complexity Low_complexity 1 21 0 1220 251 74 0 chr1 114404492 114404830 -128259523 - MLT1A1 LTR MaLR -2 363 1 21 0 0 0 chr1 114406527 114406548 -128257805 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 114407905 114407931 -128256422 + AT_rich Low_complexity Low_complexity 1 26 0 31 0 0 0 chr1 114409867 114409898 -128254455 + AT_rich Low_complexity Low_complexity 1 31 0 241 224 0 15 chr1 114410571 114410638 -128253715 - LTR33A LTR ERVL -17 506 441 245 288 51 51 chr1 114410830 114410948 -128253405 + MER20 DNA MER1_type 1 118 -101 604 320 128 57 chr1 114412287 114413095 -128251258 + L2 LINE L2 1294 2158 -1156 506 235 51 24 chr1 114413125 114413380 -128250973 - L1MB7 LINE L1 -9 6175 5882 1350 229 0 13 chr1 114413397 114413711 -128250642 - AluJb SINE Alu 0 312 3 235 241 0 108 chr1 114413871 114413954 -128250399 + MER2 DNA MER2_type 5 78 -267 21966 83 5 2 chr1 114414063 114417128 -128247225 - L1P LINE L1 -1723 4423 1350 477 179 48 0 chr1 114417128 114417212 -128247141 + MER41A LTR ERV1 451 538 -16 2047 176 42 7 chr1 114417287 114417697 -128246656 + MSTA LTR MaLR 5 428 0 41 36 0 0 chr1 114417814 114417869 -128246484 + AT_rich Low_complexity Low_complexity 1 55 0 1939 138 7 3 chr1 114417873 114418178 -128246175 - AluSx SINE Alu -6 306 1 288 312 78 28 chr1 114418277 114418418 -128245935 - MIR3 SINE MIR -41 167 20 25 31 0 0 chr1 114418512 114418544 -128245809 + AT_rich Low_complexity Low_complexity 1 32 0 6335 196 27 12 chr1 114418544 114420769 -128243584 - L1PB4 LINE L1 -16 6140 3884 22 0 0 0 chr1 114421160 114421182 -128243171 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr1 114421581 114421604 -128242749 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr1 114422129 114422155 -128242198 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr1 114422280 114422326 -128242027 + AT_rich Low_complexity Low_complexity 1 46 0 215 263 13 40 chr1 114422699 114422775 -128241578 + GA-rich Low_complexity Low_complexity 3 76 0 22 70 0 0 chr1 114423075 114423118 -128241235 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr1 114424031 114424059 -128240294 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 114424698 114424733 -128239620 + AT_rich Low_complexity Low_complexity 1 35 0 2208 92 10 0 chr1 114425067 114425361 -128238992 - AluSg SINE Alu -13 297 1 24 77 0 0 chr1 114425502 114425554 -128238799 + AT_rich Low_complexity Low_complexity 1 52 0 939 282 30 23 chr1 114425891 114426327 -128238026 - MER20B DNA MER1_type -6 777 339 3937 208 34 18 chr1 114426741 114427813 -128236540 + L1MB1 LINE L1 5057 6143 -25 * 13182 30 0 1 chr1 114427812 114429418 -128234935 - L1PA3 LINE L1 -2082 4064 2460 2233 48 0 0 chr1 114429414 114429686 -128234667 + L1PA3 LINE L1 4072 4343 -1803 * 8500 27 0 1 chr1 114429803 114431579 -128232774 + L1PA3 LINE L1 4377 6152 -3 1303 246 54 33 chr1 114431636 114431892 -128232461 - L1ME LINE L1 -364 5802 5553 1486 270 8 3 chr1 114431892 114432255 -128232098 - MLT1A1 LTR MaLR 0 365 1 1303 246 54 33 chr1 114432255 114432787 -128231566 - L1ME LINE L1 -613 5553 4996 868 39 0 0 chr1 114432787 114432891 -128231462 - L1PA7 LINE L1 -5 6149 6046 2377 284 114 16 chr1 114432918 114434668 -128229685 - L1ME LINE L1 -1601 4545 2575 2857 164 18 30 chr1 114434797 114435363 -128228990 - L1MC1 LINE L1 -18 6315 5757 4256 165 32 48 chr1 114435450 114436442 -128227911 + L1PB4 LINE L1 5162 6144 -12 2029 191 37 5 chr1 114436490 114436894 -128227459 - L1MC1 LINE L1 -603 5730 5314 1095 306 36 29 chr1 114436906 114437494 -128226859 + L1PB3 LINE L1 3 594 -6269 2217 193 113 18 chr1 114437497 114438390 -128225963 + L1PB3 LINE L1 1674 2866 -3996 5205 207 10 7 chr1 114438393 114439517 -128224836 + L1PB3 LINE L1 4018 5144 -1718 353 211 14 0 chr1 114439617 114439688 -128224665 + L1PB3 LINE L1 6438 6509 -358 303 241 35 11 chr1 114439704 114439791 -128224562 - L1MC4 LINE L1 -1340 6702 6614 216 172 0 0 chr1 114439808 114439866 -128224487 + (TA)n Simple_repeat Simple_repeat 1 58 0 2050 167 6 3 chr1 114439875 114440240 -128224113 + L1PB3 LINE L1 6501 6866 -4 855 257 17 24 chr1 114440267 114440559 -128223794 - L1M4 LINE L1 -830 5316 5027 415 355 65 39 chr1 114440647 114440985 -128223368 - L1M4 LINE L1 -5667 875 529 260 286 9 48 chr1 114441150 114441255 -128223098 - MLT1G1 LTR MaLR -284 271 171 433 309 7 50 chr1 114441294 114441361 -128222992 - MLT1G1 LTR MaLR -391 204 145 1709 164 3 7 chr1 114441361 114441660 -128222693 + AluJb SINE Alu 3 300 -12 433 309 7 50 chr1 114441660 114441731 -128222622 - MLT1G1 LTR MaLR -450 145 72 474 215 74 0 chr1 114442235 114442356 -128221997 + L1MC2 LINE L1 6203 6332 -12 314 300 27 27 chr1 114442605 114442755 -128221598 + L1MDa LINE L1 1623 1772 -4768 25 51 0 0 chr1 114442896 114442935 -128221418 + AT_rich Low_complexity Low_complexity 1 39 0 549 260 116 62 chr1 114443887 114444304 -128220049 - MER57B LTR ERV1 0 434 4 352 312 48 35 chr1 114444554 114444785 -128219568 + L1M4 LINE L1 4373 4606 -1540 212 382 0 0 chr1 114445399 114445467 -128218886 + L2 LINE L2 3193 3260 -12 564 71 59 0 chr1 114445766 114445851 -128218502 - L1MA5A LINE L1 -5 6292 6203 27 73 0 0 chr1 114445957 114446012 -128218341 + AT_rich Low_complexity Low_complexity 1 55 0 2057 114 0 0 chr1 114447209 114447515 -128216838 + AluSg SINE Alu 2 307 0 673 339 41 32 chr1 114447564 114447909 -128216444 - LTR16A LTR ERVL 0 450 103 2150 234 59 25 chr1 114448009 114448530 -128215823 + MLT2B3 LTR ERVL 1 434 -19 367 51 77 13 chr1 114448530 114448608 -128215745 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 418 90 0 15 chr1 114448608 114448675 -128215678 + MLT2B3 LTR ERVL 455 520 0 280 356 101 5 chr1 114448702 114448890 -128215463 - HERVL LTR ERVL -704 4950 4745 1695 194 5 64 chr1 114449421 114449797 -128214556 - MLT1B LTR MaLR 0 390 37 657 317 46 8 chr1 114450159 114450421 -128213932 - HERVL LTR ERVL -2925 2071 1800 1365 355 21 18 chr1 114450553 114451167 -128213186 - HERVL LTR ERVL -3420 1576 961 2242 225 68 17 chr1 114451586 114452349 -128212004 + L1 LINE L1 2698 3499 -2647 1642 172 13 83 chr1 114452363 114452393 -128211960 - MLT1A1 LTR MaLR -8 357 326 2048 123 3 29 chr1 114452393 114452709 -128211644 + AluSq SINE Alu 1 308 -5 1642 172 13 83 chr1 114452709 114453062 -128211291 - MLT1A1 LTR MaLR -39 326 1 512 205 17 17 chr1 114453062 114453179 -128211174 + L1 LINE L1 3501 3617 -2529 596 324 78 27 chr1 114453222 114453555 -128210798 - HERVL LTR ERVL -4609 387 38 1297 278 156 14 chr1 114453705 114454147 -128210206 - MLT1D LTR MaLR 0 505 1 25 75 0 0 chr1 114454446 114454499 -128209854 + AT_rich Low_complexity Low_complexity 1 53 0 23 42 0 21 chr1 114454728 114454756 -128209597 + AT_rich Low_complexity Low_complexity 1 29 -18 1896 135 0 34 chr1 114454756 114455053 -128209300 - AluSx SINE Alu -24 288 2 23 42 0 21 chr1 114455053 114455072 -128209281 + AT_rich Low_complexity Low_complexity 29 47 0 235 308 122 47 chr1 114456220 114456392 -128207961 + MIR SINE MIR 5 189 -73 26 0 0 0 chr1 114457994 114458020 -128206333 + AT_rich Low_complexity Low_complexity 1 26 0 1066 226 2 157 chr1 114459575 114460235 -128204118 + MER52A LTR ERV1 660 1349 -406 * 1347 263 145 40 chr1 114460204 114460816 -128203537 + MER52A LTR ERV1 553 1755 0 2782 148 10 37 chr1 114461142 114461376 -128202977 + HSMAR1 DNA Mariner 102 318 -969 2503 62 3 0 chr1 114461376 114461685 -128202668 + AluY SINE Alu 2 311 0 2782 148 10 37 chr1 114461685 114461936 -128202417 + HSMAR1 DNA Mariner 318 574 -713 1609 195 0 13 chr1 114462038 114462341 -128202012 - AluJb SINE Alu -11 301 3 474 198 0 75 chr1 114462499 114462605 -128201748 + MER2 DNA MER2_type 3 100 -245 6900 267 70 43 chr1 114462620 114465731 -128198622 + L1MA4A LINE L1 9 3203 -3645 718 134 76 0 chr1 114465744 114465863 -128198490 + LTR3b LTR ERVK 159 286 -214 1580 197 48 0 chr1 114465867 114466162 -128198191 - HERVK3 LTR ERVK -5092 2151 1843 1455 204 86 18 chr1 114466161 114466499 -128197854 - HERVK3 LTR ERVK -5562 1681 1321 * 629 236 136 16 chr1 114466644 114466886 -128197467 - HERVK3 LTR ERVK -6971 272 2 1809 166 55 6 chr1 114466886 114467212 -128197141 - LTR3b LTR ERVK 0 500 159 6036 229 35 7 chr1 114467266 114468885 -128195468 + L1MA4A LINE L1 3593 5255 -1593 1051 221 12 36 chr1 114468895 114469148 -128195205 + AluJo SINE Alu 36 282 -30 4117 209 67 13 chr1 114469160 114470804 -128193549 + L1MA4A LINE L1 5253 6982 -23 476 222 0 0 chr1 114470804 114470903 -128193450 + MER2 DNA MER2_type 85 183 -162 1081 251 48 6 chr1 114470954 114471289 -128193064 - L1M4 LINE L1 -2180 4464 4116 * 1279 271 51 15 chr1 114471276 114471796 -128192557 - L1M4 LINE L1 -2911 3733 3148 306 269 46 62 chr1 114471983 114472113 -128192240 - L1M4 LINE L1 -5914 632 505 235 0 0 54 chr1 114472139 114472176 -128192177 + (TTTTTG)n Simple_repeat Simple_repeat 5 39 0 9886 189 49 65 chr1 114472198 114473044 -128191309 - L1MA8 LINE L1 -4 6287 5429 2213 117 0 3 chr1 114473044 114473353 -128191000 + AluSq SINE Alu 1 308 -5 9886 189 49 65 chr1 114473353 114473855 -128190498 - L1MA8 LINE L1 -862 5429 4920 667 193 0 7 chr1 114473855 114473990 -128190363 - AluJo SINE Alu -178 134 1 9886 189 49 65 chr1 114473990 114474378 -128189975 - L1MA8 LINE L1 -1371 4920 4527 216 0 0 0 chr1 114474378 114474402 -128189951 + (TG)n Simple_repeat Simple_repeat 2 25 0 1835 160 3 3 chr1 114474403 114474690 -128189663 - AluSx SINE Alu -25 287 1 9886 189 49 65 chr1 114474690 114476793 -128187560 - L1MA8 LINE L1 -1763 4528 2380 252 86 0 0 chr1 114477088 114477123 -128187230 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1160 127 215 13 chr1 114477156 114477384 -128186969 + LTR12 LTR ERV1 1 274 -440 329 253 10 0 chr1 114477388 114477487 -128186866 + LTR30 LTR ERV1 544 643 -79 697 137 1 15 chr1 114477488 114477609 -128186744 + LTR12 LTR ERV1 302 581 -133 418 345 99 5 chr1 114478021 114478244 -128186109 + MIR SINE MIR 19 262 0 5436 225 68 49 chr1 114478291 114479169 -128185184 - L1MB7 LINE L1 -1 6183 5323 2311 77 0 0 chr1 114479169 114479456 -128184897 - AluY SINE Alu -24 287 1 5436 225 68 49 chr1 114479456 114481448 -128182905 - L1MB7 LINE L1 -861 5323 3267 408 276 81 67 chr1 114481503 114481862 -128182491 - L1M4 LINE L1 -6134 408 45 23 54 0 0 chr1 114482647 114482684 -128181669 + AT_rich Low_complexity Low_complexity 1 37 0 348 196 134 0 chr1 114483060 114483157 -128181196 - L1PB4 LINE L1 -3 6153 6044 * 1571 171 74 21 chr1 114483145 114483525 -128180828 - L1MA4A LINE L1 -180 6123 5724 180 193 53 105 chr1 114484702 114484759 -128179594 + L2 LINE L2 3219 3272 0 29 60 0 0 chr1 114486268 114486318 -128178035 + AT_rich Low_complexity Low_complexity 1 50 0 251 261 34 68 chr1 114486714 114486802 -128177551 - L2 LINE L2 0 3313 3229 308 192 39 0 chr1 114486812 114486916 -128177437 + (TA)n Simple_repeat Simple_repeat 1 108 0 328 235 49 0 chr1 114486946 114487027 -128177326 + L1MC4 LINE L1 6617 6701 -1341 212 238 0 0 chr1 114487230 114487272 -128177081 + GA-rich Low_complexity Low_complexity 1 42 0 519 297 37 92 chr1 114487324 114487450 -128176903 - L2 LINE L2 -1451 1863 1732 1596 138 0 12 chr1 114487450 114487703 -128176650 + AluSq SINE Alu 55 304 -9 519 297 37 92 chr1 114487703 114487980 -128176373 - L2 LINE L2 -1582 1732 1482 23 54 0 0 chr1 114488613 114488650 -128175703 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 114488882 114488903 -128175450 + AT_rich Low_complexity Low_complexity 1 21 0 1959 273 170 23 chr1 114489185 114490091 -128174262 + L1MB1 LINE L1 13 1051 -4840 519 218 145 5 chr1 114490090 114490283 -128174070 - L1MB8 LINE L1 -197 5981 5762 * 3329 216 58 8 chr1 114490283 114491407 -128172946 + L1MB1 LINE L1 4455 5656 -336 1021 213 99 28 chr1 114491407 114491689 -128172664 + AluJo SINE Alu 1 302 0 3329 216 58 8 chr1 114491689 114491938 -128172415 + L1MB1 LINE L1 5656 5891 -101 21 0 0 0 chr1 114491985 114492006 -128172347 + AT_rich Low_complexity Low_complexity 1 21 0 508 219 49 132 chr1 114492511 114492928 -128171425 + LTR12 LTR ERV1 167 452 -262 1503 176 0 42 chr1 114493399 114493705 -128170648 - MER4A LTR ERV1 0 664 372 425 156 89 0 chr1 114493763 114493853 -128170500 - MER4A LTR ERV1 -566 98 1 9611 189 21 36 chr1 114494501 114494558 -128169795 - L1M1 LINE L1 -743 6822 6766 2156 155 25 0 chr1 114494558 114494913 -128169440 + THE1B LTR MaLR 1 364 0 9611 189 21 36 chr1 114494913 114497234 -128167119 - L1M1 LINE L1 -799 6766 4539 250 245 0 0 chr1 114497239 114497288 -128167065 - L1M1 LINE L1 -7505 60 12 186 43 0 0 chr1 114498312 114498335 -128166018 + (TA)n Simple_repeat Simple_repeat 1 23 0 32 43 0 0 chr1 114498683 114498729 -128165624 + AT_rich Low_complexity Low_complexity 1 46 0 23 71 0 36 chr1 114498769 114498853 -128165500 + AT_rich Low_complexity Low_complexity 1 81 0 28 0 0 0 chr1 114498988 114499016 -128165337 + AT_rich Low_complexity Low_complexity 1 28 0 4140 148 11 67 chr1 114499276 114500100 -128164253 - Tigger2 DNA MER2_type -2 2716 1939 31997 91 18 10 chr1 114500130 114503141 -128161212 - L1PA6 LINE L1 -11 6143 3066 2559 59 0 0 chr1 114503141 114503444 -128160909 - AluY SINE Alu -6 305 3 31997 91 18 10 chr1 114503444 114505953 -128158400 - L1PA6 LINE L1 -3088 3066 578 605 94 12 0 chr1 114505921 114506006 -128158347 - L1PA6 LINE L1 -6049 97 12 * 9594 186 20 18 chr1 114506016 114507014 -128157339 - Tigger2 DNA MER2_type -765 1953 946 2384 50 13 3 chr1 114507014 114507315 -128157038 - AluY SINE Alu -7 304 1 9594 186 20 18 chr1 114507315 114508239 -128156114 - Tigger2 DNA MER2_type -1772 946 26 252 179 45 0 chr1 114508364 114508431 -128155922 + (TA)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr1 114509225 114509246 -128155107 + AT_rich Low_complexity Low_complexity 1 21 0 1149 216 92 26 chr1 114509626 114509973 -128154380 - MLT1A2 LTR MaLR -4 370 1 2136 143 40 8 chr1 114510154 114510505 -128153848 + THE1B LTR MaLR 3 364 0 282 292 0 56 chr1 114510770 114510859 -128153494 + MIR SINE MIR 3 86 -176 310 292 13 127 chr1 114510861 114511097 -128153256 + MIR SINE MIR 48 256 -6 31 48 0 16 chr1 114512045 114512085 -128152268 + AT_rich Low_complexity Low_complexity 1 41 -21 2512 146 32 68 chr1 114512085 114512231 -128152122 + L1PA15 LINE L1 5657 5807 -358 2397 48 0 0 chr1 114512231 114512522 -128151831 + AluY SINE Alu 1 291 -20 2512 146 32 68 chr1 114512522 114512903 -128151450 + L1PA15 LINE L1 5807 6165 0 31 48 0 16 chr1 114512903 114512925 -128151428 + AT_rich Low_complexity Low_complexity 41 62 0 326 299 82 46 chr1 114513162 114513356 -128150997 + L1M4 LINE L1 4496 4696 -1450 21 0 0 0 chr1 114513427 114513448 -128150905 + AT_rich Low_complexity Low_complexity 1 21 0 2198 102 3 0 chr1 114513759 114514067 -128150286 + AluSp SINE Alu 3 311 0 21 71 0 0 chr1 114515620 114515662 -128148691 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 114515967 114515988 -128148365 + AT_rich Low_complexity Low_complexity 1 21 0 375 228 12 6 chr1 114516319 114516490 -128147863 + (TA)n Simple_repeat Simple_repeat 2 173 0 22 0 0 0 chr1 114516692 114516714 -128147639 + AT_rich Low_complexity Low_complexity 1 22 0 745 106 0 0 chr1 114517097 114517219 -128147134 + L1PA8 LINE L1 6050 6171 -3 3439 195 16 8 chr1 114518249 114519697 -128144656 - L1MA8 LINE L1 -6 6285 4640 30 0 0 0 chr1 114519955 114519985 -128144368 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr1 114520200 114520238 -128144115 + AT_rich Low_complexity Low_complexity 1 38 0 336 286 20 0 chr1 114521107 114521205 -128143148 + MER97c DNA MER1_type? 71 170 -920 294 330 96 35 chr1 114521609 114521839 -128142514 - MIR SINE MIR -1 261 18 31 26 0 0 chr1 114523025 114523063 -128141290 + AT_rich Low_complexity Low_complexity 1 38 0 207 0 0 0 chr1 114523594 114523617 -128140736 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2117 61 0 18 chr1 114523619 114523898 -128140455 - AluY SINE Alu -31 280 7 2123 119 0 0 chr1 114524014 114524299 -128140054 - AluSx SINE Alu -27 285 1 1049 104 25 0 chr1 114524908 114525071 -128139282 - L1P3 LINE L1 -3074 3387 3221 * 12056 111 14 14 chr1 114525056 114526902 -128137451 - L1P3 LINE L1 -4611 1850 1 23 68 0 0 chr1 114526909 114526953 -128137400 + AT_rich Low_complexity Low_complexity 1 44 0 1959 216 17 6 chr1 114526977 114527455 -128136898 + L1 LINE L1 4906 5388 -758 1007 219 50 95 chr1 114527641 114528102 -128136251 - L1MDa LINE L1 -4671 1735 1296 491 133 22 22 chr1 114528291 114528381 -128135972 + MER4A LTR ERV1 1 90 -574 1507 165 22 77 chr1 114528385 114528755 -128135598 + MER4A LTR ERV1 257 664 0 1944 268 59 15 chr1 114528756 114529345 -128135008 - L1MDa LINE L1 -5289 1120 506 261 0 0 0 chr1 114529361 114529390 -128134963 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 1384 224 0 0 chr1 114529390 114529662 -128134691 - AluJb SINE Alu -32 280 9 568 231 14 122 chr1 114529788 114530009 -128134344 - L1MDa LINE L1 -6122 287 91 209 355 104 45 chr1 114530057 114530412 -128133941 - L2 LINE L2 -18 3295 2920 617 150 59 52 chr1 114530575 114530761 -128133592 - AluJb SINE Alu 0 312 158 3241 144 2 13 chr1 114530863 114531418 -128132935 + HERVH LTR ERV1 2437 2985 -4728 * 12175 129 10 25 chr1 114531414 114533456 -128130897 + HERVH LTR ERV1 3140 5149 -2564 573 163 23 23 chr1 114533447 114533576 -128130777 + HERVH LTR ERV1 5590 5718 -1995 * 340 235 43 63 chr1 114534286 114534507 -128129846 + L1M4 LINE L1 1522 1890 -4873 684 264 72 40 chr1 114534624 114534992 -128129361 - MER39 LTR ERV1 0 664 331 1300 181 92 18 chr1 114535007 114535312 -128129041 - MSTA LTR MaLR -64 311 1 5957 188 42 13 chr1 114535312 114536466 -128127887 - MSTA-int LTR MaLR 0 1580 429 1450 177 14 7 chr1 114536457 114536740 -128127613 - MSTA-int LTR MaLR -1366 285 1 * 1689 180 150 8 chr1 114536806 114537179 -128127174 - MSTA LTR MaLR -2 426 1 879 304 60 11 chr1 114537194 114537672 -128126681 - L1M3c LINE L1 -5240 901 308 978 152 0 0 chr1 114537808 114537966 -128126387 + L1M1 LINE L1 5531 5688 -612 1330 213 53 53 chr1 114537966 114538141 -128126212 + THE1C LTR MaLR 1 175 -200 1194 194 155 0 chr1 114538141 114538399 -128125954 + AluSq SINE Alu 3 300 -3 1330 213 53 53 chr1 114538399 114538598 -128125755 + THE1C LTR MaLR 174 375 0 8653 166 6 43 chr1 114538607 114540231 -128124122 + MSTA-int LTR MaLR 13 1579 -1 299 170 0 0 chr1 114540231 114540284 -128124069 + MSTA LTR MaLR 3 55 -373 10543 93 6 37 chr1 114540291 114540759 -128123594 + HERVL LTR ERVL 6 487 -5167 2163 98 20 0 chr1 114540759 114541056 -128123297 - AluSg SINE Alu -7 303 1 10543 93 6 37 chr1 114541056 114542113 -128122240 + HERVL LTR ERVL 487 1483 -4171 383 255 123 0 chr1 114542215 114542321 -128122032 + L1M3c LINE L1 183 301 -5840 191 86 0 29 chr1 114542463 114542498 -128121855 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 187 267 22 0 chr1 114542499 114542544 -128121809 - L2 LINE L2 -14 3299 3254 260 326 12 0 chr1 114542733 114542819 -128121534 + L2 LINE L2 3186 3272 0 231 146 0 0 chr1 114543424 114543465 -128120888 + (TG)n Simple_repeat Simple_repeat 2 42 0 10127 116 16 5 chr1 114543493 114546475 -128117878 - L1PA7 LINE L1 -4 6150 3101 20187 101 13 2 chr1 114546585 114550196 -128114157 - L1PA7 LINE L1 -207 6262 2615 927 198 0 6 chr1 114550184 114550341 -128114012 - L1PA7 LINE L1 -6301 160 5 * 3266 211 41 42 chr1 114550328 114552007 -128112346 - L1MA9 LINE L1 -262 7469 5790 429 204 0 43 chr1 114552007 114552100 -128112253 - L1MA9 LINE L1 -2104 5461 5373 308 293 86 17 chr1 114552399 114552515 -128111838 - MIR SINE MIR -64 144 21 289 246 52 48 chr1 114552816 114552948 -128111405 + MER5B DNA MER1_type 60 178 0 390 257 33 109 chr1 114553055 114553101 -128111252 - MIR SINE MIR -62 200 152 1512 195 86 9 chr1 114553101 114553439 -128110914 - MLT1A1 LTR MaLR -1 364 1 390 257 33 109 chr1 114553439 114553602 -128110751 - MIR SINE MIR -110 152 7 263 292 22 11 chr1 114554120 114554209 -128110144 - MIR SINE MIR -150 112 23 255 200 80 13 chr1 114554638 114554713 -128109640 + LTR67 LTR ERVL 461 540 -17 199 289 237 10 chr1 114555297 114555394 -128108959 + L2 LINE L2 3150 3268 -4 1984 126 18 0 chr1 114555447 114555733 -128108620 - AluSg SINE Alu -19 291 1 266 369 133 23 chr1 114555780 114556416 -128107937 + L2 LINE L2 2567 3277 -36 1467 207 3 43 chr1 114556863 114557162 -128107191 + AluJo SINE Alu 3 289 -23 578 295 80 24 chr1 114557417 114557756 -128106597 + L1MC4 LINE L1 7519 7876 -166 5045 219 54 14 chr1 114558121 114559498 -128104855 - L1MA9 LINE L1 -2247 5318 3887 244 107 0 133 chr1 114559561 114559636 -128104717 + L1MC4 LINE L1 6638 6702 -1340 230 181 0 14 chr1 114559651 114559723 -128104630 + (TA)n Simple_repeat Simple_repeat 1 71 0 387 60 0 0 chr1 114559751 114559801 -128104552 + (TC)n Simple_repeat Simple_repeat 1 50 0 192 40 0 0 chr1 114559801 114559826 -128104527 + (TA)n Simple_repeat Simple_repeat 1 25 0 378 199 61 23 chr1 114559830 114559961 -128104392 - L1 LINE L1 -2848 3298 3163 344 236 36 0 chr1 114559965 114560075 -128104278 + (TA)n Simple_repeat Simple_repeat 1 114 0 218 213 21 0 chr1 114560074 114560121 -128104232 + GA-rich Low_complexity Low_complexity 2 49 0 * 795 231 61 48 chr1 114560121 114560623 -128103730 - L1MA9 LINE L1 -3702 3863 3343 2000 246 73 49 chr1 114560668 114561958 -128102395 - L1MA9 LINE L1 -4201 3365 2259 494 224 0 0 chr1 114561969 114562067 -128102286 - MSTA LTR MaLR 0 428 331 1761 120 90 37 chr1 114562067 114562446 -128101907 - LTR7 LTR ERV1 0 450 1 3735 101 5 18 chr1 114562446 114563010 -128101343 - HERVH LTR ERV1 0 7713 7157 23 68 0 0 chr1 114563341 114563385 -128100968 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 114563994 114564016 -128100337 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr1 114564215 114564266 -128100087 + AT_rich Low_complexity Low_complexity 1 51 0 1095 129 169 15 chr1 114564266 114564500 -128099853 + AluSg1 SINE Alu 47 311 0 224 159 0 58 chr1 114564627 114564696 -128099657 + (TA)n Simple_repeat Simple_repeat 2 66 0 570 335 68 49 chr1 114565730 114566851 -128097502 + L1MEc LINE L1 39 1180 -5216 39811 55 29 2 chr1 114566853 114572084 -128092269 + L1P LINE L1 1 5374 -772 7606 24 2 0 chr1 114572312 114573518 -128090835 + L1PA3 LINE L1 4948 6155 0 347 329 104 8 chr1 114573580 114573945 -128090408 + L1MEc LINE L1 1228 1627 -4769 235 319 59 24 chr1 114573955 114574124 -128090229 + L1M1 LINE L1 2840 3014 -4551 9667 194 47 54 chr1 114574319 114575214 -128089139 + L1M1 LINE L1 8 908 -6657 383 93 0 0 chr1 114575214 114575268 -128089085 + L1PA6 LINE L1 6101 6154 0 9667 194 47 54 chr1 114575268 114577442 -128086911 + L1M1 LINE L1 908 3732 -3833 2784 201 124 0 chr1 114577437 114578170 -128086183 + L1M1 LINE L1 4072 4895 -2670 * 326 74 0 0 chr1 114578174 114578228 -128086125 + L1MA2 LINE L1 6243 6296 -8 1672 283 104 22 chr1 114578248 114579260 -128085093 + L1M1 LINE L1 5368 6462 -1103 421 296 25 73 chr1 114579273 114579547 -128084806 + L1ME2 LINE L1 5892 6152 -12 372 289 61 0 chr1 114580576 114580690 -128083663 - LTR33A LTR ERVL -228 295 175 666 341 26 0 chr1 114580730 114581000 -128083353 + ERVL LTR ERVL 4188 4464 -1300 183 80 0 0 chr1 114581218 114581243 -128083110 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 496 244 117 74 chr1 114581327 114581721 -128082632 + HAL1 LINE L1 1105 1515 -992 357 24 0 0 chr1 114581771 114581813 -128082540 + (CA)n Simple_repeat Simple_repeat 1 42 0 221 273 45 27 chr1 114582361 114582471 -128081882 - MIR SINE MIR -1 261 150 323 321 134 63 chr1 114582521 114582820 -128081533 + L3 LINE CR1 1237 1556 -21 252 314 64 70 chr1 114582947 114583119 -128081234 - MIR SINE MIR -45 217 47 21 0 0 0 chr1 114583179 114583200 -128081153 + AT_rich Low_complexity Low_complexity 1 21 0 257 307 143 14 chr1 114585288 114585428 -128078925 + MIR SINE MIR 98 255 -7 11999 166 46 21 chr1 114585856 114586222 -128078131 - Tigger1 DNA MER2_type 0 2418 2063 2189 112 0 0 chr1 114586222 114586516 -128077837 - AluSg SINE Alu -14 296 3 11999 166 46 21 chr1 114586516 114586531 -128077822 - Tigger1 DNA MER2_type -355 2063 2050 306 73 0 0 chr1 114586531 114586572 -128077781 + (CA)n Simple_repeat Simple_repeat 2 42 0 11999 166 46 21 chr1 114586572 114588491 -128075862 - Tigger1 DNA MER2_type -368 2050 60 35 54 0 0 chr1 114589099 114589155 -128075198 + AT_rich Low_complexity Low_complexity 1 56 0 2242 82 0 58 chr1 114589913 114590243 -128074110 - AluY SINE Alu 0 311 1 474 280 88 101 chr1 114590601 114591055 -128073298 - LTR67 LTR ERVL -2 555 108 229 226 0 0 chr1 114591276 114591329 -128073024 + MLT1J2 LTR MaLR 354 406 -44 2228 30 51 17 chr1 114592004 114592299 -128072054 + AluY SINE Alu 1 305 -6 2071 94 3 14 chr1 114593900 114594218 -128070135 - AluY SINE Alu 0 315 1 443 354 92 8 chr1 114594247 114594678 -128069675 - L2 LINE L2 -251 3062 2604 1297 201 32 97 chr1 114595047 114595490 -128068863 + MLT2D LTR ERVL 1 414 0 3512 275 68 25 chr1 114595886 114597478 -128066875 + L1ME1 LINE L1 3181 4847 -1299 2102 71 4 0 chr1 114597478 114597747 -128066606 - AluSg SINE Alu -40 270 1 3512 275 68 25 chr1 114597747 114597799 -128066554 + L1ME1 LINE L1 4847 4895 -1251 1607 281 94 19 chr1 114597815 114598060 -128066293 + L1ME1 LINE L1 4961 5186 -980 297 51 0 0 chr1 114598060 114598099 -128066254 + (TG)n Simple_repeat Simple_repeat 2 40 0 1607 281 94 19 chr1 114598099 114598935 -128065418 + L1ME1 LINE L1 5186 6134 -32 1839 188 65 22 chr1 114599476 114599890 -128064463 + MSTB1 LTR MaLR 1 432 0 23 0 0 0 chr1 114600865 114600888 -128063465 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr1 114601047 114601081 -128063272 + AT_rich Low_complexity Low_complexity 1 34 0 2007 129 0 3 chr1 114602842 114603136 -128061217 + AluSc SINE Alu 1 293 -16 351 157 0 0 chr1 114603302 114603372 -128060981 + (TA)n Simple_repeat Simple_repeat 2 71 0 219 333 24 0 chr1 114604090 114604174 -128060179 + L2 LINE L2 2532 2617 -697 208 267 100 0 chr1 114604232 114604292 -128060061 + L2 LINE L2 3247 3312 -1 1978 259 75 15 chr1 114605178 114605862 -128058491 + L1MB8 LINE L1 5452 6176 -2 857 152 113 0 chr1 114606589 114606740 -128057613 - MER44D DNA MER2_type -5 600 561 1444 226 7 11 chr1 114606766 114607053 -128057300 - MER44D DNA MER2_type -418 287 2 211 175 0 25 chr1 114607351 114607391 -128056962 - L2 LINE L2 -14 3299 3261 353 292 61 71 chr1 114607871 114608733 -128055620 - L1MEc LINE L1 -3823 2392 1578 708 252 85 25 chr1 114608866 114609267 -128055086 - L1MDa LINE L1 -3908 2632 2208 685 204 62 25 chr1 114609421 114609583 -128054770 - AluJb SINE Alu -139 173 6 30 59 0 0 chr1 114610001 114610052 -128054301 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr1 114610482 114610513 -128053840 + AT_rich Low_complexity Low_complexity 1 31 0 350 221 26 0 chr1 114610869 114610946 -128053407 + Tigger2 DNA MER2_type 666 744 -1974 1476 185 159 26 chr1 114611017 114611198 -128053155 + MSTA LTR MaLR 1 157 -271 1905 152 60 20 chr1 114611198 114611547 -128052806 + THE1B LTR MaLR 2 364 0 10983 110 13 1 chr1 114611548 114613108 -128051245 + THE1B-int LTR MaLR 2 1580 0 2110 130 48 20 chr1 114613108 114613462 -128050891 + THE1B LTR MaLR 1 364 0 1476 185 159 26 chr1 114613462 114613655 -128050698 + MSTA LTR MaLR 156 428 0 839 189 144 5 chr1 114613655 114613876 -128050477 + Tigger2 DNA MER2_type 2455 2706 -12 408 40 0 0 chr1 114613987 114614037 -128050316 + (T)n Simple_repeat Simple_repeat 1 50 0 7832 125 18 35 chr1 114614141 114615459 -128048894 + HERVH LTR ERV1 1061 2356 -5357 303 169 60 12 chr1 114615563 114615646 -128048707 + L1MA9 LINE L1 6225 6311 -1 210 91 0 0 chr1 114615722 114615755 -128048598 + (CA)n Simple_repeat Simple_repeat 2 34 0 230 278 30 8 chr1 114616078 114616211 -128048142 - Zaphod DNA AcHobo -61 3970 3835 959 304 127 16 chr1 114616212 114616662 -128047691 - Zaphod DNA AcHobo -3531 500 1 571 279 39 20 chr1 114617005 114617209 -128047144 + MER63A DNA MER1_type 2 209 -1 2801 13 0 6 chr1 114617744 114618057 -128046296 + AluYa5 SINE Alu 1 311 0 19588 102 9 9 chr1 114618189 114620738 -128043615 + HERVL LTR ERVL 1420 3969 -1685 2325 104 0 3 chr1 114620738 114621045 -128043308 + AluY SINE Alu 1 306 -5 19588 102 9 9 chr1 114621045 114621252 -128043101 + HERVL LTR ERVL 3969 4175 -1479 26 30 0 0 chr1 114621259 114621292 -128043061 + AT_rich Low_complexity Low_complexity 1 33 0 440 268 6 51 chr1 114621309 114621466 -128042887 - L1MEc LINE L1 -4580 2027 1878 302 261 0 43 chr1 114621516 114621631 -128042722 - L1MEc LINE L1 -4904 1522 1413 494 291 62 27 chr1 114621643 114622131 -128042222 - L1MEc LINE L1 -5041 1566 1062 297 0 0 0 chr1 114622141 114622174 -128042179 + (TC)n Simple_repeat Simple_repeat 2 34 0 1357 315 29 6 chr1 114622174 114622666 -128041687 - L1MEc LINE L1 -5845 762 260 208 219 0 0 chr1 114623097 114623138 -128041215 + CT-rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr1 114625331 114625364 -128038989 + AT_rich Low_complexity Low_complexity 1 33 0 37 39 0 0 chr1 114625811 114625862 -128038491 + AT_rich Low_complexity Low_complexity 1 51 0 459 224 80 67 chr1 114625862 114626025 -128038328 - MER5A DNA MER1_type -23 155 2 25 31 0 0 chr1 114626165 114626197 -128038156 + AT_rich Low_complexity Low_complexity 1 32 0 30 59 0 0 chr1 114626637 114626688 -128037665 + AT_rich Low_complexity Low_complexity 1 51 0 1430 182 119 68 chr1 114627730 114628219 -128036134 + MER67D LTR ERV1 1 514 0 22 0 0 0 chr1 114628249 114628271 -128036082 + AT_rich Low_complexity Low_complexity 1 22 0 5408 175 42 23 chr1 114628354 114629917 -128034436 - L1MA3 LINE L1 0 7724 3628 5011 190 11 2 chr1 114629907 114630765 -128033588 - L1MA3 LINE L1 -5601 1964 1100 * 518 207 43 0 chr1 114630760 114630876 -128033477 - L1MA3 LINE L1 -7429 136 16 * 22 0 0 0 chr1 114631126 114631148 -128033205 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 114631472 114631503 -128032850 + AT_rich Low_complexity Low_complexity 1 31 0 745 243 27 9 chr1 114631603 114631867 -128032486 - MER57A LTR ERV1 -2 401 99 38 51 0 0 chr1 114632201 114632260 -128032093 + AT_rich Low_complexity Low_complexity 1 59 0 273 283 120 0 chr1 114632594 114632686 -128031667 - MIR SINE MIR -44 218 116 2085 181 61 20 chr1 114632689 114633098 -128031255 + MSTC LTR MaLR 3 428 0 27 81 0 0 chr1 114633189 114633251 -128031102 + AT_rich Low_complexity Low_complexity 1 62 0 11645 183 67 3 chr1 114633445 114635703 -128028650 + Tigger1 DNA MER2_type 15 2416 -2 28 0 0 0 chr1 114635813 114635841 -128028512 + AT_rich Low_complexity Low_complexity 1 28 0 5979 127 2 2 chr1 114635998 114636926 -128027427 - L1PA14 LINE L1 0 6161 5234 339 177 35 97 chr1 114636930 114637043 -128027310 - L1MC4 LINE L1 -1333 6709 6604 2208 148 3 3 chr1 114637207 114637558 -128026795 - MLT2A1 LTR ERVL -92 352 2 23123 87 14 12 chr1 114637559 114640675 -128023678 - HERVL-A1 LTR ERVL 0 5654 2530 12094 99 10 5 chr1 114640675 114642937 -128021416 - HERVL-A1 LTR ERVL -3304 2350 2 302 61 82 0 chr1 114642939 114642988 -128021365 - MLT2A1 LTR ERVL -2 442 390 351 64 81 40 chr1 114643004 114643177 -128021176 + (TA)n Simple_repeat Simple_repeat 1 180 0 310 118 39 56 chr1 114643171 114643349 -128021004 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 2734 122 25 0 chr1 114643358 114643752 -128020601 - MLT2A1 LTR ERVL -40 404 1 15208 214 29 38 chr1 114643755 114646793 -128017560 - L1PA14 LINE L1 -910 5236 2242 1440 238 0 0 chr1 114646793 114647091 -128017262 - AluJb SINE Alu -14 298 1 15208 214 29 38 chr1 114647091 114648136 -128016217 - L1PA14 LINE L1 -3904 2242 1189 2437 120 3 28 chr1 114648143 114648535 -128015818 - L1PA8A LINE L1 -2 6129 5748 6735 118 41 6 chr1 114648635 114649562 -128014791 - L1PA8A LINE L1 -393 5738 4727 267 54 0 0 chr1 114649562 114649599 -128014754 + (TA)n Simple_repeat Simple_repeat 1 37 0 6735 118 41 6 chr1 114649599 114650224 -128014129 - L1PA8A LINE L1 -1404 4727 4125 256 297 95 27 chr1 114650591 114650739 -128013614 + MER77 LTR ERV1 41 198 -407 1008 310 66 26 chr1 114650741 114651163 -128013190 + MER77 LTR ERV1 154 592 -13 354 23 0 0 chr1 114652022 114652065 -128012288 + (CA)n Simple_repeat Simple_repeat 2 44 0 401 292 80 15 chr1 114652624 114652761 -128011592 - MIR SINE MIR -43 219 74 644 261 82 39 chr1 114653179 114653436 -128010917 - THE1B LTR MaLR -95 269 2 683 182 82 13 chr1 114653491 114653650 -128010703 - MLT1B LTR MaLR -217 173 4 211 289 165 25 chr1 114653660 114653781 -128010572 - L2 LINE L2 -16 3297 3160 579 382 41 12 chr1 114654135 114654368 -128009985 - L2 LINE L2 -743 2571 2346 7265 37 8 1 chr1 114654368 114655868 -128008485 + L1PA3 LINE L1 4681 6155 0 579 382 41 12 chr1 114655868 114656194 -128008159 - L2 LINE L2 -968 2346 1996 1088 194 68 40 chr1 114656613 114656885 -128007468 - AluJo SINE Alu 0 306 28 1474 51 0 0 chr1 114657764 114657995 -128006358 + L1PA3 LINE L1 5956 6186 0 323 375 49 25 chr1 114657995 114658240 -128006113 - L2 LINE L2 -2076 1238 988 543 43 0 0 chr1 114658472 114658542 -128005811 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1546 237 175 9 chr1 114658673 114658709 -128005644 - MLT2B2 LTR ERVL -3 512 483 614 44 44 18 chr1 114658709 114658822 -128005531 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 1546 237 175 9 chr1 114658822 114659224 -128005129 - MLT2B2 LTR ERVL -32 483 1 2047 84 11 18 chr1 114660953 114661290 -128003063 - AluSq SINE Alu 0 335 1 382 169 52 13 chr1 114662131 114662208 -128002145 - Tigger5 DNA MER2_type -1 2322 2243 336 196 0 0 chr1 114662232 114662288 -128002065 + Tigger5 DNA MER2_type 33 88 -2235 334 152 0 0 chr1 114662310 114662356 -128001997 - Tigger5 DNA MER2_type -5 2318 2273 39 0 0 0 chr1 114663654 114663693 -128000660 + AT_rich Low_complexity Low_complexity 1 39 0 1894 179 37 38 chr1 114664507 114665057 -127999296 - MLT2A2 LTR ERVL 0 554 1 1936 168 6 12 chr1 114665169 114665508 -127998845 + MER1B DNA MER1_type 1 337 0 573 222 118 0 chr1 114665770 114665914 -127998439 - FRAM SINE Alu -10 166 6 234 81 0 0 chr1 114666262 114666299 -127998054 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chr1 114667310 114667336 -127997017 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr1 114667369 114667393 -127996960 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr1 114667613 114667656 -127996697 + AT_rich Low_complexity Low_complexity 1 43 0 39 92 0 0 chr1 114668565 114668674 -127995679 + AT_rich Low_complexity Low_complexity 1 109 0 24 53 0 0 chr1 114668775 114668813 -127995540 + AT_rich Low_complexity Low_complexity 1 38 0 1266 255 17 73 chr1 114669187 114669650 -127994703 + MLT1D LTR MaLR 2 438 -67 1590 177 58 13 chr1 114669665 114670043 -127994310 - L1MA4 LINE L1 -6 6294 5900 244 296 23 23 chr1 114670182 114670270 -127994083 - L1ME3A LINE L1 -94 6076 5989 704 89 0 104 chr1 114670309 114670444 -127993909 + L1PB1 LINE L1 6030 6150 -1 226 299 81 62 chr1 114670796 114671214 -127993139 - L1MDa LINE L1 -4816 1724 1299 27 29 0 0 chr1 114672006 114672040 -127992313 + AT_rich Low_complexity Low_complexity 1 34 0 347 297 61 48 chr1 114674222 114674591 -127989762 - L1ME3A LINE L1 -389 5732 5352 339 331 39 8 chr1 114674910 114675040 -127989313 + L2 LINE L2 3180 3313 0 300 216 14 14 chr1 114675565 114675639 -127988714 + MIR SINE MIR 184 257 -5 22 70 0 0 chr1 114675986 114676029 -127988324 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr1 114676240 114676273 -127988080 + AT_rich Low_complexity Low_complexity 1 33 0 1226 303 169 25 chr1 114676283 114677046 -127987307 + L2 LINE L2 1598 2470 -844 2229 68 0 4 chr1 114677185 114677491 -127986862 - AluY SINE Alu 0 305 1 23 0 0 0 chr1 114677493 114677516 -127986837 + AT_rich Low_complexity Low_complexity 1 23 0 252 240 229 0 chr1 114678972 114679068 -127985285 + MER5C DNA MER1_type 7 124 -200 1522 207 45 93 chr1 114679395 114679938 -127984415 - L1MC2 LINE L1 -18 7753 6143 22 35 0 0 chr1 114679959 114679988 -127984365 + AT_rich Low_complexity Low_complexity 1 29 0 505 117 86 16 chr1 114680018 114680146 -127984207 - L1MA6 LINE L1 -2 6480 6344 6965 181 39 42 chr1 114680147 114681735 -127982618 - L1MA6 LINE L1 -358 6124 4546 423 0 0 0 chr1 114681735 114681782 -127982571 + (CA)n Simple_repeat Simple_repeat 2 48 0 6965 181 39 42 chr1 114681782 114682455 -127981898 - L1MA6 LINE L1 -1936 4546 3872 252 189 0 19 chr1 114682449 114682502 -127981851 - L1MA6 LINE L1 -5262 66 15 * 342 244 11 0 chr1 114682517 114682607 -127981746 - L1MC3 LINE L1 -506 7279 7189 242 306 0 0 chr1 114682607 114682679 -127981674 - MLT1F1 LTR MaLR -442 125 54 3769 238 30 63 chr1 114682686 114682941 -127981412 - L1MC3 LINE L1 -678 7107 6845 3006 141 14 4 chr1 114682941 114683445 -127980908 + MER9 LTR ERVK 3 511 0 3769 238 30 63 chr1 114683445 114683473 -127980880 - L1MC3 LINE L1 -940 6845 6818 2489 64 0 10 chr1 114683473 114683787 -127980566 - AluY SINE Alu 0 311 1 3769 238 30 63 chr1 114683787 114684811 -127979542 - L1MC3 LINE L1 -967 6818 5843 30 0 0 0 chr1 114684892 114684922 -127979431 + AT_rich Low_complexity Low_complexity 1 30 0 1608 172 6 45 chr1 114686424 114686738 -127977615 - AluJb SINE Alu -10 302 1 2237 158 39 7 chr1 114687063 114687494 -127976859 - L1MA4 LINE L1 -9 6291 5847 434 327 47 0 chr1 114687822 114687972 -127976381 - MIR SINE MIR -27 235 79 1486 272 134 32 chr1 114688006 114689210 -127975143 - L1MEc LINE L1 -2718 3497 2417 1521 189 0 27 chr1 114689210 114689506 -127974847 - AluSx SINE Alu -23 289 2 1486 272 134 32 chr1 114689506 114689524 -127974829 - L1MEc LINE L1 -3798 2417 2402 2789 6 0 6 chr1 114689524 114689837 -127974516 - AluYa5 SINE Alu 0 311 1 1486 272 134 32 chr1 114689837 114690048 -127974305 - L1MEc LINE L1 -3813 2402 1966 737 278 82 14 chr1 114690105 114690458 -127973895 - L1MEc LINE L1 -4574 1822 1446 478 225 59 91 chr1 114690508 114690881 -127973472 - L1MEc LINE L1 -5226 1170 810 2058 111 4 0 chr1 114691068 114691378 -127972975 - AluSx SINE Alu 0 313 3 297 0 0 0 chr1 114691382 114691415 -127972938 + (TC)n Simple_repeat Simple_repeat 2 34 0 270 0 0 0 chr1 114691657 114691687 -127972666 + (TC)n Simple_repeat Simple_repeat 2 31 0 269 26 26 0 chr1 114691801 114691839 -127972514 + (TC)n Simple_repeat Simple_repeat 2 40 0 2275 97 0 3 chr1 114691936 114692245 -127972108 + AluSc SINE Alu 2 309 0 228 255 32 32 chr1 114692540 114692634 -127971719 + L1MEd LINE L1 991 1084 -5035 725 191 15 0 chr1 114692668 114692799 -127971554 - Tigger5 DNA MER2_type -4 2319 2187 2195 243 27 16 chr1 114692807 114693523 -127970830 - Tigger5 DNA MER2_type -1541 782 1 1069 206 41 95 chr1 114693675 114694087 -127970266 - MLT1B LTR MaLR 0 390 1 23 54 0 0 chr1 114694292 114694329 -127970024 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 114694402 114694437 -127969916 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 114694792 114694815 -127969538 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 114695032 114695059 -127969294 + AT_rich Low_complexity Low_complexity 1 27 0 3334 226 45 14 chr1 114695086 114696481 -127967872 - L1MB2 LINE L1 -33 5962 4476 2131 212 36 75 chr1 114696482 114696565 -127967788 + LTR9 LTR ERV1 1 86 -526 3364 100 10 0 chr1 114696565 114697046 -127967307 + LTR19A LTR ERV1 1 486 0 2131 212 36 75 chr1 114697046 114697599 -127966754 + LTR9 LTR ERV1 86 612 0 2078 257 92 42 chr1 114697599 114699648 -127964705 - L1MB2 LINE L1 -1492 4478 2533 1981 136 0 0 chr1 114699648 114699949 -127964404 - AluSg SINE Alu 0 301 1 2078 257 92 42 chr1 114699949 114701324 -127963029 - L1MB2 LINE L1 -3437 2533 407 371 325 70 58 chr1 114701560 114701889 -127962464 - L1MB2 LINE L1 -5533 358 26 511 330 127 14 chr1 114702685 114703046 -127961307 - L2 LINE L2 -773 2541 2140 31 0 0 0 chr1 114703158 114703189 -127961164 + AT_rich Low_complexity Low_complexity 1 31 0 12576 195 36 14 chr1 114703200 114705928 -127958425 - L1MA4 LINE L1 -20 7699 5035 2200 121 0 0 chr1 114705928 114706225 -127958128 + AluSq SINE Alu 3 299 -14 12576 195 36 14 chr1 114706225 114706608 -127957745 - L1MA4 LINE L1 -2684 5035 4662 1464 188 7 46 chr1 114706608 114706912 -127957441 - AluJb SINE Alu -20 292 1 12576 195 36 14 chr1 114706912 114710403 -127953950 - L1MA4 LINE L1 -3057 4662 840 1980 203 34 86 chr1 114710403 114711053 -127953300 - LTR6A LTR ERV1 0 564 1 2369 220 22 2 chr1 114711053 114711516 -127952837 - L1MA4 LINE L1 -6722 843 372 200 183 0 113 chr1 114711911 114711982 -127952371 + T-rich Low_complexity Low_complexity 1 63 0 573 77 0 0 chr1 114711988 114712066 -127952287 - L1PA5 LINE L1 0 6154 6077 2525 56 0 9 chr1 114712066 114712390 -127951963 + L1PA5 LINE L1 5758 6078 -76 30 0 0 0 chr1 114713340 114713370 -127950983 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 114713453 114713476 -127950877 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr1 114715174 114715204 -127949149 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr1 114715414 114715456 -127948897 + AT_rich Low_complexity Low_complexity 1 42 0 231 119 0 0 chr1 114715816 114715858 -127948495 - LTR66 LTR ERVL -175 435 394 227 96 0 77 chr1 114715818 114715870 -127948483 + LTR66 LTR ERVL 394 441 -169 * 254 426 0 0 chr1 114716402 114716524 -127947829 - L2 LINE L2 -8 3264 3143 445 371 65 16 chr1 114716689 114717012 -127947341 - L2 LINE L2 -349 2965 2627 224 338 140 13 chr1 114718174 114718331 -127946022 - MIR SINE MIR -84 178 2 25 0 0 0 chr1 114718891 114718916 -127945437 + AT_rich Low_complexity Low_complexity 1 25 0 547 249 90 5 chr1 114719346 114719547 -127944806 + L1MD2 LINE L1 6134 6351 -8 1571 218 77 17 chr1 114719547 114719964 -127944389 - L1MD3 LINE L1 -53 7942 7501 1528 193 0 30 chr1 114720700 114720996 -127943357 - AluJo SINE Alu -25 287 1 546 356 43 31 chr1 114721259 114721768 -127942585 + HERVL LTR ERVL 3231 3745 -1909 3469 59 0 9 chr1 114721980 114722421 -127941932 + L1PA7 LINE L1 5714 6150 -4 387 360 49 55 chr1 114722959 114723493 -127940860 + L2 LINE L2 2757 3272 0 1503 251 121 9 chr1 114724867 114725321 -127939032 - MLT2B2 LTR ERVL -10 505 1 991 169 37 5 chr1 114725321 114725510 -127938843 - ERVL-B2 LTR ERVL -7 5757 5563 1071 223 27 5 chr1 114725510 114725811 -127938542 - MLT1A1 LTR MaLR 0 365 2 14829 203 27 15 chr1 114725812 114728808 -127935545 - ERVL-B2 LTR ERVL -197 5567 2479 852 218 88 0 chr1 114728851 114729067 -127935286 - MLT2B1 LTR ERVL -285 235 1 189 303 57 41 chr1 114730899 114731021 -127933332 - MIR SINE MIR -11 251 128 3215 92 7 5 chr1 114731023 114731471 -127932882 + LTR2 LTR ERV1 1 449 0 2399 180 22 15 chr1 114731471 114731932 -127932421 + Harlequin LTR ERV1 1 464 -6432 2949 190 34 11 chr1 114731962 114732530 -127931823 + Harlequin LTR ERV1 425 1005 -6808 595 128 39 0 chr1 114732530 114732632 -127931721 + LTR2 LTR ERV1 161 266 -183 39483 181 5 9 chr1 114732633 114739443 -127924910 + Harlequin LTR ERV1 1035 7812 -1 3245 94 9 2 chr1 114739443 114739889 -127924464 + LTR2 LTR ERV1 1 449 0 2042 157 0 0 chr1 114741029 114741334 -127923019 - AluSx SINE Alu -7 305 1 2027 142 0 0 chr1 114741351 114741646 -127922707 - AluSx SINE Alu -17 295 1 2129 137 30 33 chr1 114741754 114742119 -127922234 - THE1B LTR MaLR 0 364 1 182 203 0 27 chr1 114742269 114742343 -127922010 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 7526 215 18 4 chr1 114744051 114745445 -127918908 + L1PA12 LINE L1 5 1417 -6164 402 117 17 0 chr1 114745451 114745511 -127918842 + L1PA12 LINE L1 1707 1767 -5814 2262 109 93 24 chr1 114745511 114745887 -127918466 - MER52C LTR ERV1 0 1278 877 1380 218 33 0 chr1 114745897 114746232 -127918121 + L1PA14 LINE L1 4326 4671 -1475 1791 176 65 6 chr1 114746232 114746585 -127917768 - THE1C LTR MaLR 0 375 2 8853 146 71 15 chr1 114746586 114748081 -127916272 - THE1C-int LTR MaLR 0 1580 2 2017 126 67 17 chr1 114748082 114748439 -127915914 - THE1C LTR MaLR 0 375 1 5275 118 31 16 chr1 114748440 114749920 -127914433 + L1PA14 LINE L1 4668 6158 -3 227 352 119 48 chr1 114750103 114750455 -127913898 + L2 LINE L2 2904 3280 -33 341 328 31 8 chr1 114750840 114750968 -127913385 - MER5A DNA MER1_type -25 164 34 236 211 14 0 chr1 114751265 114751336 -127913017 + GA-rich Low_complexity Low_complexity 2 73 0 4382 24 0 0 chr1 114752625 114753135 -127911218 + L1PA3 LINE L1 5644 6153 -2 303 93 0 0 chr1 114753320 114753363 -127910990 + (TG)n Simple_repeat Simple_repeat 2 44 0 303 28 0 0 chr1 114753427 114753463 -127910890 + (GA)n Simple_repeat Simple_repeat 1 36 0 1204 247 55 55 chr1 114753464 114753918 -127910435 - MLT2B1 LTR ERVL -66 454 1 22 35 0 0 chr1 114755187 114755216 -127909137 + AT_rich Low_complexity Low_complexity 1 29 0 2677 291 111 25 chr1 114755455 114757001 -127907352 + L1MEc LINE L1 136 1848 -4548 2036 64 0 93 chr1 114757001 114757313 -127907040 - AluY SINE Alu -2 309 27 2677 291 111 25 chr1 114757313 114757503 -127906850 + L1MEc LINE L1 1848 2020 -4376 324 0 0 0 chr1 114757756 114757792 -127906561 + (TG)n Simple_repeat Simple_repeat 1 36 0 1358 234 28 34 chr1 114757895 114758012 -127906341 - L1ME3A LINE L1 -9 6161 6045 2412 90 0 0 chr1 114758012 114758322 -127906031 + AluSp SINE Alu 2 311 -2 1358 234 28 34 chr1 114758322 114758559 -127905794 - L1ME3A LINE L1 -125 6045 5809 932 353 54 32 chr1 114758819 114759814 -127904539 + HERVL LTR ERVL 3454 4513 -1251 273 398 22 4 chr1 114759934 114760160 -127904193 + HERVL LTR ERVL 4572 4801 -853 1620 188 0 7 chr1 114760555 114760837 -127903516 + AluJb SINE Alu 1 280 -32 22 80 0 0 chr1 114760840 114760890 -127903463 + AT_rich Low_complexity Low_complexity 1 50 0 183 360 70 0 chr1 114761495 114761581 -127902772 + L2 LINE L2 3169 3260 -12 642 113 0 0 chr1 114761758 114761873 -127902480 + (CATA)n Simple_repeat Simple_repeat 2 116 0 837 174 38 11 chr1 114762038 114762222 -127902131 - MER33 DNA MER1_type -116 208 20 220 106 64 0 chr1 114762839 114762886 -127901467 + (TA)n Simple_repeat Simple_repeat 1 50 0 2526 53 0 0 chr1 114763004 114763305 -127901048 - AluY SINE Alu -9 302 2 21 0 0 0 chr1 114763463 114763484 -127900869 + AT_rich Low_complexity Low_complexity 1 21 0 228 35 0 0 chr1 114764969 114764998 -127899355 + (CA)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr1 114765054 114765092 -127899261 + AT_rich Low_complexity Low_complexity 1 38 0 267 325 36 0 chr1 114765137 114765220 -127899133 + L2 LINE L2 3187 3272 0 23 68 0 0 chr1 114765766 114765810 -127898543 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr1 114766946 114766971 -127897382 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 114767380 114767401 -127896952 + AT_rich Low_complexity Low_complexity 1 21 0 4119 192 40 10 chr1 114767804 114769019 -127895334 - L1MA4A LINE L1 -23 6280 4984 557 177 32 0 chr1 114769007 114769128 -127895225 - L1MB7 LINE L1 -225 5937 5813 * 1776 196 110 19 chr1 114769122 114769139 -127895214 - L1MC1 LINE L1 0 6402 6388 2757 7 0 0 chr1 114769139 114769442 -127894911 - AluYa5 SINE Alu -8 303 1 1776 196 110 19 chr1 114769442 114769842 -127894511 - L1MC1 LINE L1 -14 6388 5947 5400 88 21 7 chr1 114769848 114770606 -127893747 - L1PA8A LINE L1 0 6131 5363 4471 96 3 3 chr1 114770602 114771256 -127893097 + L1PA8A LINE L1 4704 5357 -789 * 930 186 38 0 chr1 114771253 114771436 -127892917 - L1MC1 LINE L1 -441 5961 5772 * 1990 84 91 3 chr1 114771436 114771721 -127892632 + AluSg SINE Alu 1 310 0 2197 259 27 26 chr1 114771796 114772602 -127891751 - L1MC1 LINE L1 -1194 5021 4215 541 243 36 23 chr1 114772661 114773555 -127890798 - L1MC1 LINE L1 -2859 3356 2405 2003 164 71 28 chr1 114773566 114774083 -127890270 - MLT2A2 LTR ERVL 0 554 1 435 242 17 0 chr1 114774088 114774208 -127890145 - L1MC1 LINE L1 -3967 2429 2308 1161 254 17 6 chr1 114774211 114774566 -127889787 - L1M4 LINE L1 -1347 4799 4441 27 73 0 0 chr1 114775178 114775233 -127889120 + AT_rich Low_complexity Low_complexity 1 55 0 643 303 122 38 chr1 114775523 114775942 -127888411 + LTR16A1 LTR ERVL 4 457 0 26 64 0 0 chr1 114776275 114776322 -127888031 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr1 114776488 114776517 -127887836 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 114776921 114776943 -127887410 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 114776968 114776996 -127887357 + AT_rich Low_complexity Low_complexity 1 28 0 2269 50 4 0 chr1 114778035 114778314 -127886039 - AluY SINE Alu -2 309 30 21 57 0 0 chr1 114778392 114778427 -127885926 + AT_rich Low_complexity Low_complexity 1 35 0 756 217 48 4 chr1 114778782 114779120 -127885233 + MSTD LTR MaLR 8 396 0 227 237 17 0 chr1 114779120 114779179 -127885174 + (TA)n Simple_repeat Simple_repeat 1 60 0 22 35 0 0 chr1 114779559 114779588 -127884765 + AT_rich Low_complexity Low_complexity 1 29 0 231 172 50 30 chr1 114779648 114779747 -127884606 + (TA)n Simple_repeat Simple_repeat 1 101 0 6919 162 21 15 chr1 114780174 114781386 -127882967 + Tigger1 DNA MER2_type 22 1240 -1178 29 47 0 0 chr1 114781526 114781569 -127882784 + AT_rich Low_complexity Low_complexity 1 43 0 875 108 0 0 chr1 114782058 114782178 -127882175 + AluSq/x SINE Alu 1 120 -192 212 0 0 35 chr1 114782178 114782207 -127882146 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 191 146 24 0 chr1 114782218 114782259 -127882094 + GA-rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr1 114783413 114783443 -127880910 + AT_rich Low_complexity Low_complexity 1 30 0 2563 73 3 9 chr1 114783464 114783805 -127880548 + THE1B-int LTR MaLR 1242 1580 0 2424 131 6 0 chr1 114783805 114784165 -127880188 + THE1B LTR MaLR 1 362 -2 22 56 0 0 chr1 114787613 114787649 -127876704 + AT_rich Low_complexity Low_complexity 1 36 0 352 305 133 42 chr1 114788167 114788528 -127875825 + L1MEc LINE L1 785 1178 -5218 3323 264 49 38 chr1 114788557 114790271 -127874082 + L1MC3 LINE L1 1 1729 -4835 2437 30 0 10 chr1 114790272 114790575 -127873778 + L1PA3 LINE L1 5856 6155 0 1413 250 33 3 chr1 114790580 114791193 -127873160 + L1MC3 LINE L1 5457 6090 -751 3212 120 75 167 chr1 114791498 114792408 -127871945 + LTR12 LTR ERV1 1 826 0 1069 253 65 6 chr1 114792410 114792750 -127871603 + L1MC3 LINE L1 6089 6448 -1755 1757 206 59 29 chr1 114792750 114793158 -127871195 - MSTB1 LTR MaLR -12 420 1 2556 225 62 57 chr1 114793158 114793324 -127871029 + L1MC3 LINE L1 6490 6654 -1549 2014 131 10 0 chr1 114793324 114793622 -127870731 + AluSq SINE Alu 1 301 -12 2556 225 62 57 chr1 114793622 114794232 -127870121 + L1MC3 LINE L1 6654 7270 -933 29 47 0 0 chr1 114794339 114794382 -127869971 + AT_rich Low_complexity Low_complexity 1 43 0 278 285 69 64 chr1 114794683 114795090 -127869263 + HAL1 LINE L1 906 1314 -1193 610 295 144 52 chr1 114795276 114795930 -127868423 + HAL1 LINE L1 1584 2297 -210 36 101 0 16 chr1 114795954 114796142 -127868211 + AT_rich Low_complexity Low_complexity 1 185 0 986 228 0 67 chr1 114796284 114796569 -127867784 + AluJo SINE Alu 47 312 0 342 341 59 15 chr1 114796579 114796714 -127867639 - MIR SINE MIR -108 154 14 28 29 0 0 chr1 114797207 114797242 -127867111 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 114798701 114798723 -127865630 + AT_rich Low_complexity Low_complexity 1 22 0 217 289 13 40 chr1 114799525 114799601 -127864752 + MIR SINE MIR 48 121 -141 1104 260 77 12 chr1 114799632 114799971 -127864382 - MLT1C LTR MaLR 0 467 107 11181 181 70 17 chr1 114799971 114800029 -127864324 + Tigger1 DNA MER2_type 1 54 -2364 2235 77 0 3 chr1 114800029 114800316 -127864037 - AluSc SINE Alu -23 286 1 11181 181 70 17 chr1 114800316 114801507 -127862846 + Tigger1 DNA MER2_type 54 1180 -1238 1719 151 62 49 chr1 114801507 114801877 -127862476 - THE1C LTR MaLR 0 375 1 11181 181 70 17 chr1 114801877 114802905 -127861448 + Tigger1 DNA MER2_type 1180 2400 -18 604 170 19 0 chr1 114802901 114803007 -127861346 - MLT1C LTR MaLR -359 108 1 * 23 0 0 0 chr1 114803073 114803096 -127861257 + AT_rich Low_complexity Low_complexity 1 23 0 412 256 123 0 chr1 114803904 114804107 -127860246 - MER69 DNA AcHobo -30 2496 2269 1836 141 53 0 chr1 114804129 114804448 -127859905 - L1MA6 LINE L1 0 6300 5965 1060 43 129 0 chr1 114804448 114804587 -127859766 - L1P LINE L1 -4517 1629 1473 5303 23 0 0 chr1 114804588 114805204 -127859149 + L1PA4 LINE L1 5537 6152 -3 1970 176 24 0 chr1 114805213 114805587 -127858766 - L1MA6 LINE L1 -323 5977 5595 3010 153 11 7 chr1 114805600 114806151 -127858202 - L1MA3 LINE L1 0 7724 7172 943 188 6 0 chr1 114806153 114806329 -127858024 - L1MA3 LINE L1 -1208 6357 6181 * 1823 221 30 40 chr1 114806314 114806883 -127857470 - L1MA3 LINE L1 -2569 4996 4434 13550 174 24 1 chr1 114806917 114807679 -127856674 - L1MA3 LINE L1 -3406 4159 3416 198 0 0 0 chr1 114807679 114807701 -127856652 + (TTA)n Simple_repeat Simple_repeat 2 23 0 13550 174 24 1 chr1 114807701 114809823 -127854530 - L1MA3 LINE L1 -4149 3416 1207 1377 235 81 3 chr1 114809811 114810156 -127854197 - L1MA3 LINE L1 -7175 390 19 * 3548 200 56 45 chr1 114810164 114811202 -127853151 - L1MA6 LINE L1 -775 5371 4323 1109 239 26 54 chr1 114811202 114811629 -127852724 - LTR7 LTR ERV1 0 450 36 34688 170 48 41 chr1 114811636 114819297 -127845056 - HERVH LTR ERV1 0 7713 1 1129 192 116 50 chr1 114819297 114819719 -127844634 - LTR7 LTR ERV1 0 450 1 4532 212 53 4 chr1 114819719 114820814 -127843539 - L1MA6 LINE L1 -1819 4327 3179 564 115 0 0 chr1 114820826 114820913 -127843440 - L1MA5 LINE L1 -8 6292 6206 1392 184 20 25 chr1 114820913 114821260 -127843093 - MER4A LTR ERV1 0 664 261 581 152 0 10 chr1 114821260 114821359 -127842994 - MER4A LTR ERV1 -566 98 1 5357 182 15 16 chr1 114821398 114823141 -127841212 - L1PB2 LINE L1 0 6151 4409 * 27571 45 3 0 chr1 114823137 114827386 -127836967 - L1PA4 LINE L1 0 6155 1912 1259 229 15 15 chr1 114827391 114827728 -127836625 - L1PB2 LINE L1 -1737 4409 4073 1763 238 53 22 chr1 114827762 114828360 -127835993 - L1MA6 LINE L1 -2988 3158 2542 190 256 0 0 chr1 114828360 114828403 -127835950 - MIR SINE MIR -217 45 3 234 125 16 47 chr1 114828612 114828676 -127835677 + GA-rich Low_complexity Low_complexity 3 64 0 231 36 0 0 chr1 114829711 114829739 -127834614 + (TA)n Simple_repeat Simple_repeat 1 28 0 240 35 0 0 chr1 114830455 114830484 -127833869 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 261 270 18 chr1 114831086 114831189 -127833164 + L2 LINE L2 3107 3241 -31 180 0 0 0 chr1 114831189 114831209 -127833144 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 245 313 69 7 chr1 114833045 114833189 -127831164 + MIR SINE MIR 88 240 -22 8527 224 72 35 chr1 114833447 114834173 -127830180 - L1MA10 LINE L1 -17 6381 5683 2051 126 3 0 chr1 114834173 114834459 -127829894 - AluY SINE Alu -24 287 1 8527 224 72 35 chr1 114834459 114836954 -127827399 - L1MA10 LINE L1 -715 5683 3281 2065 114 10 0 chr1 114836954 114837244 -127827109 - AluSx SINE Alu -19 293 1 8527 224 72 35 chr1 114837244 114838803 -127825550 - L1MA10 LINE L1 -3117 3281 960 1682 179 35 0 chr1 114838803 114839088 -127825265 + AluJb SINE Alu 1 295 -17 8527 224 72 35 chr1 114839088 114839233 -127825120 - L1MA10 LINE L1 -5438 960 822 236 275 92 96 chr1 114839428 114839646 -127824707 - L1MA10 LINE L1 -5240 901 685 710 304 75 38 chr1 114839780 114840207 -127824146 - L1MA10 LINE L1 -5697 444 2 27 62 0 0 chr1 114840339 114840387 -127823966 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 114841888 114841910 -127822443 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr1 114841943 114841978 -127822375 + AT_rich Low_complexity Low_complexity 1 35 0 1113 254 85 0 chr1 114842686 114843005 -127821348 - LTR65 LTR ERV1 -145 524 179 30 45 0 0 chr1 114844146 114844190 -127820163 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr1 114844265 114844308 -127820045 + AT_rich Low_complexity Low_complexity 1 43 0 2468 138 6 3 chr1 114844725 114845088 -127819265 + THE1B LTR MaLR 1 364 0 753 278 71 0 chr1 114845832 114846030 -127818323 - MER58A DNA MER1_type -8 216 5 313 298 149 46 chr1 114846338 114846667 -127817686 - HAL1b LINE L1 -945 403 41 242 222 34 24 chr1 114847872 114847976 -127816377 + HsTC2 DNA Tc2 4 1825 -73 1575 181 0 0 chr1 114848153 114848413 -127815940 + AluJb SINE Alu 1 260 -52 223 182 0 0 chr1 114848417 114848461 -127815892 + A-rich Low_complexity Low_complexity 1 44 0 213 39 0 0 chr1 114848829 114848855 -127815498 + (CA)n Simple_repeat Simple_repeat 1 26 0 317 190 57 22 chr1 114848895 114848986 -127815367 + AluSq SINE Alu 121 187 -116 723 145 0 16 chr1 114848989 114849113 -127815240 + AluSg/x SINE Alu 176 297 -15 1610 172 0 4 chr1 114849198 114849459 -127814894 - AluJo SINE Alu -49 263 4 225 333 56 93 chr1 114849583 114849799 -127814554 + L2 LINE L2 2846 3053 -219 972 168 23 61 chr1 114849855 114850069 -127814284 + MER2 DNA MER2_type 1 206 -139 23 68 0 0 chr1 114850069 114850113 -127814240 + AT_rich Low_complexity Low_complexity 1 44 0 1918 135 44 127 chr1 114850129 114850602 -127813751 - Tigger2a DNA MER2_type 0 434 1 312 230 75 98 chr1 114850658 114850832 -127813521 + MER69A DNA AcHobo 1 170 -7 301 286 18 45 chr1 114850899 114851011 -127813342 + L2 LINE L2 3162 3270 -2 216 67 0 0 chr1 114852218 114852248 -127812105 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 808 231 44 20 chr1 114852400 114852603 -127811750 + MER63A DNA MER1_type 2 209 -1 1457 88 98 0 chr1 114853344 114853559 -127810794 + AluSc SINE Alu 41 276 -33 180 0 0 0 chr1 114853559 114853579 -127810774 + (CAA)n Simple_repeat Simple_repeat 1 20 0 307 290 30 0 chr1 114853660 114853760 -127810593 - MIR SINE MIR -64 198 96 2767 330 65 24 chr1 114855365 114856773 -127807580 - L2 LINE L2 -1211 2103 638 203 307 109 44 chr1 114856785 114856922 -127807431 + MIR SINE MIR 12 157 -105 24 53 0 0 chr1 114856922 114856960 -127807393 + AT_rich Low_complexity Low_complexity 1 38 0 928 260 113 97 chr1 114857020 114857621 -127806732 + L2 LINE L2 1587 2197 -1117 345 24 0 0 chr1 114857625 114857667 -127806686 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6516 83 9 2 chr1 114857667 114858930 -127805423 - L1PA7 LINE L1 -16 6138 4869 3229 114 2 2 chr1 114858930 114859429 -127804924 + L1PA7 LINE L1 4370 4868 -1278 581 294 30 5 chr1 114859519 114859716 -127804637 + L2 LINE L2 2364 2565 -749 866 215 29 16 chr1 114860099 114860341 -127804012 - L1MA4 LINE L1 0 6300 6056 * 3112 186 40 19 chr1 114860327 114860667 -127803686 + L1MA4 LINE L1 4957 5288 -1012 215 61 30 0 chr1 114860667 114860700 -127803653 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 3112 186 40 19 chr1 114860700 114861284 -127803069 + L1MA4 LINE L1 5288 5891 -409 38406 87 4 11 chr1 114861285 114862836 -127801517 + L1PA6 LINE L1 2 1562 -4617 2333 80 0 6 chr1 114862836 114863148 -127801205 + AluY SINE Alu 1 310 -1 38406 87 4 11 chr1 114863148 114867815 -127796538 + L1PA6 LINE L1 1562 6179 0 843 201 7 8 chr1 114867815 114868019 -127796334 + L1MA4 LINE L1 5888 6085 -215 440 281 152 51 chr1 114868510 114868905 -127795448 + L1ME LINE L1 649 1083 -4987 423 307 124 30 chr1 114868910 114869444 -127794909 + L1ME LINE L1 1125 1760 -4501 1896 154 7 0 chr1 114869444 114869743 -127794610 + AluSx SINE Alu 3 303 -9 423 307 124 30 chr1 114869743 114870007 -127794346 + L1ME LINE L1 1760 1998 -4263 731 322 68 21 chr1 114870021 114870347 -127794006 + L2 LINE L2 2530 2870 -444 311 247 73 33 chr1 114870425 114870575 -127793778 - MER103 DNA DNA 0 166 11 433 154 0 39 chr1 114870984 114871062 -127793291 + MSTA LTR MaLR 13 87 -341 502 244 22 109 chr1 114871140 114871370 -127792983 + MER20 DNA MER1_type 6 215 -4 27 49 0 0 chr1 114871379 114871420 -127792933 + AT_rich Low_complexity Low_complexity 1 41 0 238 265 12 12 chr1 114871951 114872034 -127792319 + L1ME LINE L1 5784 5866 -298 274 248 81 34 chr1 114872517 114872666 -127791687 - MER103 DNA DNA 0 166 11 2648 147 7 7 chr1 114873075 114873491 -127790862 + MSTA LTR MaLR 13 428 0 28 0 0 0 chr1 114876644 114876672 -127787681 + AT_rich Low_complexity Low_complexity 1 28 0 712 226 8 0 chr1 114877265 114877398 -127786955 + MER8 DNA MER2_type 105 238 -1 223 309 118 18 chr1 114877675 114877785 -127786568 + L2 LINE L2 3137 3257 -15 465 214 0 0 chr1 114877936 114878039 -127786314 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 446 213 11 0 chr1 114878039 114878133 -127786220 - FRAM SINE Alu -76 100 6 2371 111 3 0 chr1 114878202 114878543 -127785810 - L1PB1 LINE L1 0 6151 5810 3420 173 42 4 chr1 114878550 114879826 -127784527 + L1P5 LINE L1 4427 5751 -400 29 0 0 0 chr1 114880100 114880129 -127784224 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 114880251 114880279 -127784074 + AT_rich Low_complexity Low_complexity 1 28 0 1785 171 0 7 chr1 114880376 114880675 -127783678 - AluJb SINE Alu -15 297 1 24 32 0 0 chr1 114881058 114881089 -127783264 + AT_rich Low_complexity Low_complexity 1 31 0 356 308 91 0 chr1 114881124 114881267 -127783086 + MLT1L LTR MaLR 372 527 -88 1348 156 0 9 chr1 114881960 114882184 -127782169 - AluJo SINE Alu -15 297 76 22 0 0 0 chr1 114883135 114883157 -127781196 + AT_rich Low_complexity Low_complexity 1 22 0 434 221 77 50 chr1 114884191 114884372 -127779981 + MER53 DNA DNA 1 186 -3 * 678 241 9 96 chr1 114884372 114884587 -127779766 + MER20 DNA MER1_type 24 219 0 25 75 0 0 chr1 114887133 114887186 -127777167 + AT_rich Low_complexity Low_complexity 1 53 0 1931 141 0 7 chr1 114887668 114887979 -127776374 - AluSx SINE Alu 0 309 1 2111 330 85 17 chr1 114888119 114889232 -127775121 + L2 LINE L2 1907 3089 -224 263 329 114 14 chr1 114890115 114890255 -127774098 + L2 LINE L2 3147 3300 -13 1685 143 19 0 chr1 114891276 114891542 -127772811 + MER2 DNA MER2_type 2 272 -73 23 33 0 0 chr1 114891542 114891572 -127772781 + AT_rich Low_complexity Low_complexity 1 30 0 5772 170 33 12 chr1 114891572 114893718 -127770635 - L1MA2 LINE L1 0 7723 5534 17546 195 64 12 chr1 114893719 114895266 -127769087 - L1MA2 LINE L1 -2298 5267 3802 1530 187 173 14 chr1 114895266 114895635 -127768718 + MSTA LTR MaLR 1 428 0 17546 195 64 12 chr1 114895635 114897483 -127766870 - L1MA2 LINE L1 -3763 3802 2052 375 78 0 0 chr1 114897483 114897534 -127766819 + (TG)n Simple_repeat Simple_repeat 1 51 0 17546 195 64 12 chr1 114897534 114899123 -127765230 - L1MA2 LINE L1 -5513 2052 19 364 191 32 0 chr1 114899124 114899187 -127765166 + MER2 DNA MER2_type 270 334 -11 302 287 0 10 chr1 114899195 114899296 -127765057 + (TA)n Simple_repeat Simple_repeat 1 100 0 23 68 0 0 chr1 114899719 114899763 -127764590 + AT_rich Low_complexity Low_complexity 1 44 0 1484 270 65 6 chr1 114899910 114900450 -127763903 - L1ME2 LINE L1 -20 6939 6368 272 229 26 111 chr1 114900442 114900595 -127763758 - L1ME2 LINE L1 -843 6098 5959 * 21 57 0 0 chr1 114900721 114900756 -127763597 + AT_rich Low_complexity Low_complexity 1 35 0 242 246 0 0 chr1 114900852 114900909 -127763444 - AluSp/q SINE Alu -10 293 237 1115 197 0 18 chr1 114901009 114901232 -127763121 - AluJb SINE Alu -93 219 1 580 268 92 87 chr1 114901235 114901387 -127762966 - L1ME2 LINE L1 -4517 2605 2455 1728 154 11 4 chr1 114901387 114901667 -127762686 + AluSx SINE Alu 1 282 -30 180 97 0 0 chr1 114901674 114901705 -127762648 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 580 268 92 87 chr1 114901705 114902094 -127762259 - L1ME2 LINE L1 -4672 2450 2064 1567 132 0 0 chr1 114902094 114902321 -127762032 - AluSg/x SINE Alu 0 312 86 580 268 92 87 chr1 114902321 114902357 -127761996 - L1ME2 LINE L1 -5058 2064 2030 465 19 0 0 chr1 114902357 114902411 -127761942 + (TA)n Simple_repeat Simple_repeat 1 54 0 580 268 92 87 chr1 114902411 114902487 -127761866 - L1ME2 LINE L1 -5092 2030 1939 377 277 21 50 chr1 114902633 114902965 -127761388 - L1ME2 LINE L1 -4939 1484 1343 207 0 0 0 chr1 114903501 114903524 -127760829 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 320 235 24 12 chr1 114903531 114903616 -127760737 - L1ME2 LINE L1 -5917 1014 929 2609 198 39 97 chr1 114903710 114904472 -127759881 - MER50 LTR ERV1 -16 718 1 417 338 61 10 chr1 114906078 114906276 -127758077 - MIR SINE MIR -35 227 20 305 284 47 114 chr1 114906462 114906673 -127757680 + MIR SINE MIR 20 216 -46 1340 275 120 25 chr1 114907067 114907584 -127756769 + L2 LINE L2 1923 2488 -826 381 208 62 39 chr1 114908178 114908308 -127756045 + LTR43 LTR ERV1 179 311 -291 414 305 29 0 chr1 114909475 114909580 -127754773 - MER5B DNA MER1_type -69 109 2 2145 122 0 13 chr1 114910486 114910833 -127753520 + AluSx SINE Alu 3 312 0 1942 121 10 0 chr1 114911181 114911471 -127752882 - AluSx SINE Alu -2 310 18 1017 219 31 65 chr1 114911555 114912070 -127752283 - L1M3 LINE L1 -675 5625 5167 464 155 0 0 chr1 114912072 114912143 -127752210 - AluSq SINE Alu -110 203 133 3374 150 46 0 chr1 114912163 114912769 -127751584 + L1MA4 LINE L1 5656 6289 -11 209 143 0 41 chr1 114912811 114912860 -127751493 + (TAA)n Simple_repeat Simple_repeat 3 49 0 391 344 43 12 chr1 114913032 114913195 -127751158 + MER115 DNA AcHobo 58 225 -468 524 322 26 64 chr1 114913225 114913492 -127750861 + MER115 DNA AcHobo 314 570 -123 243 281 16 0 chr1 114913497 114913561 -127750792 + Zaphod DNA AcHobo 3950 4014 -17 3349 297 125 54 chr1 114915533 114918033 -127746320 - L2 LINE L2 0 3313 522 22 80 0 0 chr1 114921631 114921681 -127742672 + AT_rich Low_complexity Low_complexity 1 50 0 501 47 0 0 chr1 114921875 114921939 -127742414 + (TG)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chr1 114923677 114923698 -127740655 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 114924385 114924415 -127739938 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr1 114924714 114924747 -127739606 + AT_rich Low_complexity Low_complexity 1 33 0 273 29 0 0 chr1 114925826 114925860 -127738493 + (TG)n Simple_repeat Simple_repeat 1 34 0 466 196 52 10 chr1 114925886 114925983 -127738370 + L1MEc LINE L1 34 134 -6262 2186 97 0 0 chr1 114926068 114926358 -127737995 + AluY SINE Alu 1 290 -21 335 237 40 0 chr1 114926374 114926450 -127737903 + L1MD3 LINE L1 7212 7290 -705 5980 98 12 20 chr1 114926461 114927667 -127736686 + L1PA8 LINE L1 4967 6166 -6 3453 121 24 13 chr1 114927685 114928041 -127736312 - L1PB1 LINE L1 -6 6145 5779 288 0 0 0 chr1 114928041 114928073 -127736280 + (TG)n Simple_repeat Simple_repeat 2 33 0 3453 121 24 13 chr1 114928073 114928262 -127736091 - L1PB1 LINE L1 -372 5779 5594 688 289 59 62 chr1 114928262 114928608 -127735745 + L1MEc LINE L1 128 474 -5922 1247 284 57 42 chr1 114928657 114929044 -127735309 + L1ME3 LINE L1 5198 5605 -557 1540 123 27 114 chr1 114929044 114929378 -127734975 + AluYb8 SINE Alu 1 305 -13 1247 284 57 42 chr1 114929378 114929717 -127734636 + L1ME3 LINE L1 5605 5937 -225 223 198 21 28 chr1 114929958 114930101 -127734252 + GA-rich Low_complexity Low_complexity 1 142 0 21 0 0 0 chr1 114930300 114930321 -127734032 + AT_rich Low_complexity Low_complexity 1 21 0 276 408 11 27 chr1 114930634 114930818 -127733535 + L2 LINE L2 2943 3123 -149 263 343 59 35 chr1 114930906 114931160 -127733193 + L2 LINE L2 2654 2913 -401 289 291 91 30 chr1 114931196 114931395 -127732958 + L2 LINE L2 3054 3264 -49 973 284 86 78 chr1 114931438 114931963 -127732390 + MLT1H LTR MaLR 3 531 -18 28 0 0 0 chr1 114932936 114932964 -127731389 + AT_rich Low_complexity Low_complexity 1 28 0 721 353 91 6 chr1 114933769 114934262 -127730091 - HERVL LTR ERVL -1154 4500 3966 2220 99 0 0 chr1 114935115 114935417 -127728936 - AluY SINE Alu 0 311 10 7724 68 4 4 chr1 114935699 114936706 -127727647 + LTR13 LTR ERVK 1 1007 0 1860 301 74 68 chr1 114937247 114937288 -127727065 + L2 LINE L2 640 679 -2635 1821 184 0 0 chr1 114937288 114937593 -127726760 - AluSx SINE Alu -5 307 3 1860 301 74 68 chr1 114937593 114937837 -127726516 + L2 LINE L2 679 920 -2394 2652 180 25 67 chr1 114937837 114938476 -127725877 - LTR9 LTR ERV1 0 612 1 1860 301 74 68 chr1 114938476 114938619 -127725734 + L2 LINE L2 920 1061 -2253 1233 141 15 10 chr1 114938619 114938818 -127725535 - L1PA16 LINE L1 -16 6150 5951 1860 301 74 68 chr1 114938818 114939501 -127724852 + L2 LINE L2 1061 1763 -1551 324 0 0 0 chr1 114939501 114939537 -127724816 + (CA)n Simple_repeat Simple_repeat 2 37 0 1860 301 74 68 chr1 114939537 114939713 -127724640 + L2 LINE L2 1763 1937 -1377 1239 199 62 146 chr1 114939713 114940225 -127724128 - MER67D LTR ERV1 -27 487 19 251 189 0 19 chr1 114940225 114940278 -127724075 + MLT1A1 LTR MaLR 1 52 -313 392 250 0 12 chr1 114940280 114940364 -127723989 + MLT1A1 LTR MaLR 24 106 -259 662 161 0 8 chr1 114940364 114940488 -127723865 + AluSg/x SINE Alu 189 311 -1 819 196 0 115 chr1 114940494 114940729 -127723624 + MLT1A1 LTR MaLR 156 363 -2 618 314 0 29 chr1 114941162 114941401 -127722952 + LTR16A LTR ERVL 18 249 -201 25 0 0 0 chr1 114942136 114942161 -127722192 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 114942217 114942239 -127722114 + AT_rich Low_complexity Low_complexity 1 22 0 189 121 0 0 chr1 114942275 114942308 -127722045 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr1 114942676 114942704 -127721649 + AT_rich Low_complexity Low_complexity 1 28 0 210 227 21 28 chr1 114942937 114943078 -127721275 + GA-rich Low_complexity Low_complexity 2 141 0 1101 253 70 25 chr1 114943255 114943655 -127720698 + LTR52 LTR ERVL 1 418 -3 1335 175 88 37 chr1 114943754 114944051 -127720302 + AluJb SINE Alu 1 312 0 564 270 49 75 chr1 114944161 114944428 -127719925 - MIR SINE MIR 0 262 3 2276 70 14 0 chr1 114944657 114944943 -127719410 + AluY SINE Alu 13 302 -9 23 0 0 0 chr1 114945497 114945520 -127718833 + AT_rich Low_complexity Low_complexity 1 23 0 236 333 0 0 chr1 114946312 114946381 -127717972 + (TG)n Simple_repeat Simple_repeat 2 70 0 1776 144 4 0 chr1 114946518 114946789 -127717564 + AluSx SINE Alu 29 300 -12 21 0 0 0 chr1 114947547 114947568 -127716785 + AT_rich Low_complexity Low_complexity 1 21 0 286 269 36 94 chr1 114948207 114948515 -127715838 - HERV16 LTR ERVL -1361 3635 3346 1499 223 73 41 chr1 114948765 114949298 -127715055 + MLT1F1 LTR MaLR 1 566 -1 565 274 70 16 chr1 114949748 114949934 -127714419 + MIR SINE MIR 65 260 -2 741 306 76 49 chr1 114951336 114951784 -127712569 + MLT1H LTR MaLR 42 501 -48 21 0 0 0 chr1 114951894 114951915 -127712438 + AT_rich Low_complexity Low_complexity 1 21 0 477 175 246 9 chr1 114952242 114952356 -127711997 + MER20 DNA MER1_type 16 156 -63 849 328 115 22 chr1 114952358 114952387 -127711966 - L2 LINE L2 -420 2894 2869 480 31 0 16 chr1 114952387 114952451 -127711902 + L1PA5 LINE L1 6086 6148 -6 849 328 115 22 chr1 114952451 114952829 -127711524 - L2 LINE L2 -445 2869 2449 2512 62 0 0 chr1 114953131 114953436 -127710917 + AluY SINE Alu 1 305 -6 23 0 0 0 chr1 114953648 114953671 -127710682 + AT_rich Low_complexity Low_complexity 1 23 0 200 139 0 23 chr1 114953869 114953912 -127710441 + (TA)n Simple_repeat Simple_repeat 2 43 0 231 149 21 0 chr1 114954764 114954811 -127709542 + T-rich Low_complexity Low_complexity 2 49 0 2689 143 9 2 chr1 114954977 114955424 -127708929 - L1PB3 LINE L1 -2 6152 5703 380 276 71 29 chr1 114955728 114955938 -127708415 + L2 LINE L2 3013 3231 -82 821 198 12 6 chr1 114956018 114956185 -127708168 - FRAM SINE Alu -8 168 1 190 331 53 80 chr1 114956185 114956487 -127707866 + L2 LINE L2 1595 1888 -1426 245 282 69 8 chr1 114956844 114956975 -127707378 + LTR43 LTR ERV1 174 312 -290 358 337 155 47 chr1 114957198 114957605 -127706748 + L2 LINE L2 2862 3312 -1 291 357 55 20 chr1 114957931 114958130 -127706223 + L2 LINE L2 2217 2422 -892 208 321 9 89 chr1 114958289 114958401 -127705952 + L2 LINE L2 2720 2822 -492 22 0 0 0 chr1 114958562 114958584 -127705769 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 114959535 114959557 -127704796 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 114959676 114959699 -127704654 + AT_rich Low_complexity Low_complexity 1 23 0 191 302 113 38 chr1 114960018 114960124 -127704229 - MIR3 SINE MIR -23 185 72 240 249 70 35 chr1 114960616 114960720 -127703633 - MIR SINE MIR -66 142 49 1355 280 59 35 chr1 114960810 114961385 -127702968 + MLT1E LTR MaLR 1 589 -4 306 73 0 0 chr1 114961561 114961602 -127702751 + (TG)n Simple_repeat Simple_repeat 2 42 0 2417 87 0 6 chr1 114961739 114962050 -127702303 - AluY SINE Alu -2 309 1 367 311 71 50 chr1 114962388 114962768 -127701585 + HERV16 LTR ERVL 145 532 -4464 775 356 36 14 chr1 114962792 114963152 -127701201 + HERV16 LTR ERVL 1173 1540 -3456 660 232 120 78 chr1 114963325 114963609 -127700744 + MLT1E-int LTR MaLR 1076 1371 0 1359 260 92 55 chr1 114963615 114964177 -127700176 + MLT1E LTR MaLR 8 590 -3 266 323 0 0 chr1 114965111 114965176 -127699177 + L2 LINE L2 3241 3305 -8 1871 172 3 0 chr1 114965346 114965654 -127698699 + AluSx SINE Alu 1 309 -3 12781 178 29 15 chr1 114966164 114968548 -127695805 + Tigger1 DNA MER2_type 1 2418 0 21 0 0 0 chr1 114969086 114969107 -127695246 + AT_rich Low_complexity Low_complexity 1 21 0 199 390 0 9 chr1 114969737 114969842 -127694511 - MIR3 SINE MIR -8 200 97 314 355 0 53 chr1 114970391 114970560 -127693793 - MER5A DNA MER1_type -2 187 28 1676 173 132 26 chr1 114970954 114971341 -127693012 - MSTA LTR MaLR 0 428 1 341 189 49 43 chr1 114971362 114971467 -127692886 - MLT1I LTR MaLR -4 418 311 270 235 82 41 chr1 114971573 114971671 -127692682 - MLT1I LTR MaLR -291 118 17 207 389 52 16 chr1 114971681 114971874 -127692479 + L2 LINE L2 2610 2809 -505 294 156 38 54 chr1 114974497 114974600 -127689753 + MLT1G1 LTR MaLR 365 450 0 207 0 0 0 chr1 114975344 114975367 -127688986 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 27 62 0 0 chr1 114976039 114976087 -127688266 + AT_rich Low_complexity Low_complexity 1 48 0 12722 91 5 0 chr1 114976135 114977848 -127686505 + L1P LINE L1 3 1723 -4423 282 255 32 21 chr1 114977951 114978045 -127686308 + LTR30 LTR ERV1 548 642 -80 2255 105 6 0 chr1 114978045 114978370 -127685983 + pTR5 LTR ERV1 66 392 -2046 7530 35 0 0 chr1 114978370 114979346 -127685007 + L1PA4 LINE L1 5180 6155 0 977 205 46 35 chr1 114979391 114979674 -127684679 + L1ME1 LINE L1 5875 6160 -6 482 182 0 64 chr1 114979833 114979943 -127684410 - L1MB8 LINE L1 -198 5980 5878 1443 158 27 46 chr1 114979978 114980247 -127684106 - L1ME1 LINE L1 -77 6089 5785 2442 75 0 3 chr1 114980247 114980554 -127683799 - AluY SINE Alu -4 307 2 1443 158 27 46 chr1 114980554 114980648 -127683705 - L1ME1 LINE L1 -381 5785 5691 1405 139 214 14 chr1 114981160 114981455 -127682898 + Tigger2 DNA MER2_type 2365 2718 0 845 267 12 56 chr1 114981457 114981708 -127682645 - LTR40a LTR ERVL -36 483 244 1237 251 39 41 chr1 114981713 114982100 -127682253 + MLT1B LTR MaLR 3 388 -2 391 274 132 38 chr1 114982197 114982409 -127681944 - LTR40a LTR ERVL -283 236 5 195 94 31 0 chr1 114982637 114982669 -127681684 - L2 LINE L2 -4 3309 3277 21217 54 0 8 chr1 114983134 114985895 -127678458 + L1P LINE L1 2446 5184 -962 5560 161 43 37 chr1 114985895 114987012 -127677341 + pTR5 LTR ERV1 744 1867 -571 285 333 0 0 chr1 114987243 114987354 -127676999 + MER94 DNA DNA 24 134 0 2203 105 3 0 chr1 114987524 114987829 -127676524 - AluSc SINE Alu -3 306 1 924 122 40 131 chr1 114988726 114988755 -127675598 + AluJb SINE Alu 103 133 -179 2129 114 3 16 chr1 114988755 114989062 -127675291 + AluSc SINE Alu 2 304 -5 924 122 40 131 chr1 114989062 114989254 -127675099 + AluJb SINE Alu 133 304 -8 847 110 0 0 chr1 114989759 114989877 -127674476 + THE1C LTR MaLR 1 118 -257 1248 95 11 48 chr1 114989879 114990068 -127674285 - AluSq SINE Alu -61 252 71 1287 149 5 14 chr1 114990068 114990290 -127674063 + THE1C LTR MaLR 156 375 0 441 143 9 54 chr1 114990290 114990401 -127673952 + MER96B DNA MER1_type? 72 177 -240 613 317 28 36 chr1 114990410 114990659 -127673694 + MIR SINE MIR 14 260 -2 21 36 0 0 chr1 114990800 114990828 -127673525 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 114990890 114990915 -127673438 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chr1 114991046 114991077 -127673276 + AT_rich Low_complexity Low_complexity 1 31 0 3351 215 53 32 chr1 114991421 114991623 -127672730 - L1MB7 LINE L1 -19 6663 6467 2052 164 6 8 chr1 114991623 114991989 -127672364 + MER47A DNA MER2_type 2 366 0 3351 215 53 32 chr1 114991989 114992827 -127671526 - L1MB7 LINE L1 -215 6467 5610 447 194 14 7 chr1 114992951 114993095 -127671258 + (TA)n Simple_repeat Simple_repeat 1 145 0 573 298 98 8 chr1 114993151 114993386 -127670967 + MER57A LTR ERV1 136 391 -12 774 275 34 21 chr1 114993413 114993649 -127670704 + MER57A-int LTR ERV1 16 254 -7283 3793 119 0 2 chr1 114994324 114994877 -127669476 + MER41A LTR ERV1 3 554 0 597 245 0 13 chr1 114995018 114995173 -127669180 - L1MB7 LINE L1 -2221 4423 4271 2141 207 45 105 chr1 114995184 114995924 -127668429 + LTR8A LTR ERV1 33 727 0 3239 274 37 42 chr1 114995926 114997570 -127666783 - L1MB7 LINE L1 -2386 4258 2623 1084 269 93 50 chr1 114997570 114998012 -127666341 - MLT1C LTR MaLR 0 467 7 437 304 51 9 chr1 114998035 114998371 -127665982 - L1MB7 LINE L1 -4032 2614 2265 617 276 33 36 chr1 114998469 114998773 -127665580 - L1MB7 LINE L1 -4627 2019 1717 1669 161 9 59 chr1 114998773 114999095 -127665258 + AluSx SINE Alu 1 306 -6 2737 217 54 53 chr1 114999095 114999887 -127664466 - L1MB7 LINE L1 -5355 1187 395 1005 59 0 0 chr1 114999887 115000005 -127664348 - AluY SINE Alu -193 118 1 2241 123 0 0 chr1 115000091 115000399 -127663954 + AluSg SINE Alu 1 308 -2 2118 182 13 27 chr1 115000900 115001351 -127663002 + MER65A LTR ERV1 1 445 0 304 257 0 14 chr1 115002421 115002495 -127661858 - 7SK RNA RNA -113 80 8 1606 169 0 72 chr1 115003230 115003383 -127660970 + AluJo SINE Alu 1 119 -193 180 0 0 0 chr1 115003383 115003403 -127660950 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1606 169 0 72 chr1 115003403 115003580 -127660773 + AluJo SINE Alu 119 307 -5 186 103 0 0 chr1 115003941 115003970 -127660383 + (A)n Simple_repeat Simple_repeat 1 29 0 279 298 84 37 chr1 115004114 115004305 -127660048 + L2 LINE L2 1877 2076 -1238 3215 303 65 25 chr1 115004317 115005604 -127658749 - L2 LINE L2 -251 3062 1724 248 302 16 0 chr1 115006181 115006244 -127658109 + L2 LINE L2 3208 3271 -42 2149 136 36 28 chr1 115006723 115007083 -127657270 - THE1B LTR MaLR 0 364 2 2062 137 0 3 chr1 115007160 115007453 -127656900 - AluSq SINE Alu -21 292 1 24 0 0 0 chr1 115007491 115007515 -127656838 + AT_rich Low_complexity Low_complexity 1 24 0 396 389 40 6 chr1 115009309 115009484 -127654869 - MIR3 SINE MIR -18 190 10 709 265 42 14 chr1 115010091 115010306 -127654047 + MER58A DNA MER1_type 4 224 0 215 318 12 47 chr1 115010369 115010454 -127653899 + L2 LINE L2 3232 3313 0 22 35 0 0 chr1 115010717 115010746 -127653607 + AT_rich Low_complexity Low_complexity 1 29 0 260 327 53 9 chr1 115012314 115012427 -127651926 - MIR3 SINE MIR -41 167 50 1153 258 156 47 chr1 115012498 115013014 -127651339 - MLT1G LTR MaLR 0 590 53 2916 241 77 28 chr1 115013506 115014283 -127650070 - MER21B LTR ERV1 -30 833 19 21 0 0 0 chr1 115014775 115014796 -127649557 + AT_rich Low_complexity Low_complexity 1 21 0 1867 132 0 0 chr1 115015018 115015309 -127649044 - AluSg SINE Alu 0 307 17 21 36 0 0 chr1 115015924 115015952 -127648401 + AT_rich Low_complexity Low_complexity 1 28 0 2344 144 3 5 chr1 115016169 115016543 -127647810 - THE1C LTR MaLR -2 373 1 1823 136 6 24 chr1 115016917 115017269 -127647084 - MER4A LTR ERV1 0 664 261 621 112 10 10 chr1 115017269 115017367 -127646986 - MER4A LTR ERV1 -566 98 1 248 205 20 73 chr1 115018188 115018339 -127646014 + (TTATA)n Simple_repeat Simple_repeat 2 144 0 2022 143 0 0 chr1 115018550 115018851 -127645502 - AluSg SINE Alu -9 301 1 1385 158 32 35 chr1 115019193 115019504 -127644849 - L1MA7 LINE L1 -3 6288 5979 1083 68 0 0 chr1 115020155 115020287 -127644066 - AluY SINE Alu -179 132 1 235 294 106 12 chr1 115020296 115020381 -127643972 + L2 LINE L2 3180 3272 0 1751 304 50 46 chr1 115020572 115021111 -127643242 + L1M4b LINE L1 15 561 -6298 3925 77 20 27 chr1 115021111 115021293 -127643060 - MER41A LTR ERV1 0 554 372 2733 10 0 0 chr1 115021293 115021596 -127642757 - AluY SINE Alu -5 306 4 3925 77 20 27 chr1 115021596 115021970 -127642383 - MER41A LTR ERV1 -182 372 2 1751 304 50 46 chr1 115021970 115022242 -127642111 + L1M4b LINE L1 561 830 -6029 2448 236 108 20 chr1 115022436 115023544 -127640809 + L1M4b LINE L1 1213 2409 -4550 22 56 0 0 chr1 115023576 115023612 -127640741 + AT_rich Low_complexity Low_complexity 1 36 0 317 263 0 21 chr1 115023816 115023911 -127640442 + L1M4b LINE L1 2610 2702 -4436 566 172 66 16 chr1 115023916 115024038 -127640315 - Tigger7 DNA MER2_type -1 2586 2459 * 2901 211 6 2 chr1 115024031 115024557 -127639796 - Tigger7 DNA MER2_type -1940 547 20 1907 155 41 36 chr1 115024557 115024919 -127639434 + THE1B LTR MaLR 1 364 0 237 286 31 0 chr1 115024972 115025070 -127639283 + L1M4b LINE L1 2699 2799 -4160 3189 147 117 101 chr1 115025267 115026682 -127637671 - pTR5 LTR ERV1 -23 1683 31 1085 212 136 9 chr1 115026883 115027216 -127637137 - L1MB8 LINE L1 -177 6001 5651 2468 68 0 3 chr1 115028174 115028484 -127635869 + AluY SINE Alu 1 309 -2 3015 208 73 0 chr1 115028504 115029096 -127635257 - L1PA15-16 LINE L1 -5242 1607 973 * 4958 148 24 52 chr1 115029095 115030178 -127634175 + L1PA16 LINE L1 5111 6166 0 572 298 19 61 chr1 115030599 115030861 -127633492 + LTR16C LTR ERVL 241 491 0 23 54 0 0 chr1 115030947 115030984 -127633369 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr1 115032375 115032406 -127631947 + AT_rich Low_complexity Low_complexity 1 31 0 33 25 0 0 chr1 115032876 115032916 -127631437 + AT_rich Low_complexity Low_complexity 1 40 0 344 234 90 43 chr1 115032953 115033209 -127631144 - L1M4 LINE L1 -3748 2398 2131 234 233 100 40 chr1 115033928 115034026 -127630327 - HAL1 LINE L1 -922 1585 1473 279 79 0 0 chr1 115034026 115034064 -127630289 + (TA)n Simple_repeat Simple_repeat 2 39 0 234 233 100 40 chr1 115034064 115034115 -127630238 - HAL1 LINE L1 -1033 1474 1427 252 0 0 0 chr1 115034249 115034277 -127630076 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3188 29 0 0 chr1 115034277 115034652 -127629701 - L1PA4 LINE L1 -18 6137 5763 1860 89 92 7 chr1 115035715 115035986 -127628367 - AluSx SINE Alu -16 296 3 1655 142 160 98 chr1 115036948 115037048 -127627305 + L1MA9 LINE L1 5727 5819 -493 1553 176 6 46 chr1 115037048 115037371 -127626982 + AluJb SINE Alu 1 310 -2 1655 142 160 98 chr1 115037371 115037653 -127626700 + L1MA9 LINE L1 5819 6154 -158 2182 120 0 3 chr1 115037653 115037962 -127626391 + AluSx SINE Alu 5 312 0 1655 142 160 98 chr1 115037962 115038108 -127626245 + L1MA9 LINE L1 6154 6289 -23 21 36 0 0 chr1 115038108 115038136 -127626217 + AT_rich Low_complexity Low_complexity 1 28 0 221 332 133 47 chr1 115039155 115039832 -127624521 + L2 LINE L2 1748 2482 -832 817 183 34 53 chr1 115040128 115040336 -127624017 + L1MA2 LINE L1 12 215 -7350 9713 151 44 12 chr1 115040346 115041977 -127622376 + L1MA2 LINE L1 1802 3510 -4055 609 72 0 0 chr1 115041977 115042060 -127622293 + (GAAA)n Simple_repeat Simple_repeat 1 83 0 9713 151 44 12 chr1 115042060 115042382 -127621971 + L1MA2 LINE L1 3510 3820 -3745 1336 208 8 0 chr1 115042391 115042655 -127621698 - L1 LINE L1 -1908 4238 3973 674 258 210 0 chr1 115042662 115042891 -127621462 + L1MA2 LINE L1 3822 4098 -3467 * 2577 200 12 90 chr1 115042886 115043345 -127621008 + L1MA2 LINE L1 4742 5160 -2405 1356 0 0 0 chr1 115043345 115043493 -127620860 + AluY SINE Alu 154 301 -10 2577 200 12 90 chr1 115043493 115043974 -127620379 + L1MA2 LINE L1 5160 5677 -1888 * 6558 123 21 3 chr1 115043966 115045193 -127619160 + L1MA2 LINE L1 6438 7684 -39 336 229 0 0 chr1 115045197 115045280 -127619073 + (CA)n Simple_repeat Simple_repeat 1 83 0 1524 257 20 12 chr1 115045621 115046026 -127618327 - MLT1E2 LTR MaLR -2 624 217 21 0 0 0 chr1 115046526 115046547 -127617806 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr1 115046971 115047008 -127617345 + AT_rich Low_complexity Low_complexity 1 37 0 503 234 161 0 chr1 115047534 115047726 -127616627 - LTR50 LTR ERVL -9 786 564 204 235 59 0 chr1 115047740 115047791 -127616562 + MIR3 SINE MIR 121 174 -34 691 294 101 31 chr1 115047943 115048328 -127616025 - MLT1J2 LTR MaLR -37 413 2 273 284 59 10 chr1 115048569 115048671 -127615682 + L2 LINE L2 3136 3242 -71 376 233 12 12 chr1 115049489 115049575 -127614778 + MIR3 SINE MIR 118 203 -5 301 330 23 0 chr1 115049618 115049706 -127614647 + MIR SINE MIR 81 170 -92 21 0 0 0 chr1 115050025 115050046 -127614307 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 115051379 115051410 -127612943 + AT_rich Low_complexity Low_complexity 1 31 0 224 218 36 0 chr1 115051443 115051498 -127612855 + L2 LINE L2 2465 2521 -793 311 258 129 65 chr1 115051629 115051784 -127612569 - L2 LINE L2 0 3313 3149 746 226 155 45 chr1 115051903 115052239 -127612114 + L1MB7 LINE L1 5803 6175 -3 350 227 92 42 chr1 115053078 115053197 -127611156 + L2 LINE L2 3189 3313 0 1554 187 7 17 chr1 115053758 115054047 -127610306 + AluJo SINE Alu 1 286 -26 294 143 0 0 chr1 115054048 115054097 -127610256 + (CA)n Simple_repeat Simple_repeat 2 50 0 248 254 0 0 chr1 115054104 115054175 -127610178 - L1MC4 LINE L1 -1347 6695 6625 1901 206 14 62 chr1 115055125 115055625 -127608728 + L1MC4 LINE L1 6614 7089 -953 1553 275 48 17 chr1 115055667 115056270 -127608083 + L1MC4 LINE L1 7279 7900 -142 21 0 0 0 chr1 115056719 115056740 -127607613 + AT_rich Low_complexity Low_complexity 1 21 0 231 358 20 7 chr1 115057235 115057386 -127606967 + L1MEd LINE L1 976 1128 -4991 759 120 0 0 chr1 115057484 115057592 -127606761 - MER50 LTR ERV1 -23 711 604 6244 193 39 38 chr1 115057594 115057873 -127606480 - MER50-int LTR ERV1 -5155 2382 2105 1587 175 0 55 chr1 115057873 115058198 -127606155 + AluSq SINE Alu 1 307 -6 6244 193 39 38 chr1 115058198 115059246 -127605107 - MER50-int LTR ERV1 -5432 2105 1051 3166 152 2 6 chr1 115059258 115059772 -127604581 - MER50-int LTR ERV1 -822 4058 3547 1698 134 138 7 chr1 115059772 115060070 -127604283 - MER50-int LTR ERV1 -3399 1481 1145 6842 142 17 18 chr1 115060070 115061538 -127602815 - MER50-int LTR ERV1 -5659 1546 1 3693 160 22 35 chr1 115061621 115062093 -127602260 - MER50 LTR ERV1 -23 711 250 6196 120 13 19 chr1 115062093 115063067 -127601286 + LTR5 LTR ERVK 1 969 0 3693 160 22 35 chr1 115063067 115063312 -127601041 - MER50 LTR ERV1 -484 250 3 382 289 126 43 chr1 115063605 115063979 -127600374 + L1M4 LINE L1 3079 3483 -2663 693 184 0 0 chr1 115064531 115064645 -127599708 - FLAM_C SINE Alu -20 123 10 26 0 0 0 chr1 115064651 115064677 -127599676 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr1 115064928 115064956 -127599397 + AT_rich Low_complexity Low_complexity 1 28 0 277 303 46 28 chr1 115066103 115066212 -127598141 - L1ME LINE L1 -5936 134 24 21 0 0 0 chr1 115066808 115066829 -127597524 + AT_rich Low_complexity Low_complexity 1 21 0 335 338 48 24 chr1 115067015 115067225 -127597128 + L2 LINE L2 2533 2747 -567 21 36 0 0 chr1 115067728 115067756 -127596597 + AT_rich Low_complexity Low_complexity 1 28 0 393 257 47 61 chr1 115068810 115068958 -127595395 + L2 LINE L2 3167 3312 -1 390 291 52 29 chr1 115069112 115069284 -127595069 + MER5B DNA MER1_type 2 177 -1 426 85 0 0 chr1 115069369 115069428 -127594925 + (TGAA)n Simple_repeat Simple_repeat 3 61 0 203 254 0 18 chr1 115069428 115069483 -127594870 + GA-rich Low_complexity Low_complexity 3 56 0 1509 262 77 14 chr1 115071685 115072112 -127592241 + MLT1F LTR MaLR 89 542 0 242 213 62 38 chr1 115072484 115072564 -127591789 - MLT1J1 LTR MaLR -2 444 363 236 200 83 33 chr1 115072900 115072960 -127591393 + LTR67 LTR ERVL 484 546 -11 26 30 0 0 chr1 115073363 115073396 -127590957 + AT_rich Low_complexity Low_complexity 1 33 0 5783 175 18 4 chr1 115073536 115074663 -127589690 + L1MC2 LINE L1 5195 6336 -8 24 0 0 0 chr1 115075110 115075134 -127589219 + AT_rich Low_complexity Low_complexity 1 24 0 1839 148 3 20 chr1 115075216 115075520 -127588833 - AluJo SINE Alu -3 309 11 318 303 0 78 chr1 115076180 115076322 -127588031 - L2 LINE L2 0 3313 3183 357 372 8 0 chr1 115076875 115076996 -127587357 - L1MC4 LINE L1 -1307 6735 6614 319 308 0 0 chr1 115076916 115077007 -127587346 + L1MC4 LINE L1 6612 6702 -1340 * 205 255 78 0 chr1 115077093 115077144 -127587209 - L2 LINE L2 -111 3161 3107 207 0 0 0 chr1 115077285 115077308 -127587045 + (A)n Simple_repeat Simple_repeat 1 23 0 653 245 212 0 chr1 115077571 115077816 -127586537 + L1MD3 LINE L1 7691 7987 -8 32 95 0 0 chr1 115077892 115077987 -127586366 + AT_rich Low_complexity Low_complexity 1 95 0 332 337 86 18 chr1 115078632 115078795 -127585558 - L2 LINE L2 0 3313 3140 958 162 21 42 chr1 115079123 115079314 -127585039 - MLT1B LTR MaLR -201 189 3 339 348 43 11 chr1 115079573 115079757 -127584596 + MER117 DNA MER1_type 8 197 0 282 29 0 0 chr1 115082286 115082321 -127582032 + (CA)n Simple_repeat Simple_repeat 1 35 0 10732 31 5 1 chr1 115082347 115084409 -127579944 - L1PA4 LINE L1 0 6155 4089 2019 143 3 6 chr1 115085093 115085464 -127578889 + L1PB3 LINE L1 5817 6186 0 3092 262 71 12 chr1 115085637 115086655 -127577698 + L1MC4a LINE L1 6674 7751 -57 1570 124 0 0 chr1 115086706 115086923 -127577430 + AluSq SINE Alu 1 217 -96 5198 252 30 24 chr1 115086952 115088722 -127575631 + L1M4 LINE L1 3562 5341 -805 27 29 0 0 chr1 115088898 115088932 -127575421 + AT_rich Low_complexity Low_complexity 1 34 0 366 256 261 20 chr1 115089281 115089484 -127574869 - HAL1 LINE L1 -1089 1418 1167 249 57 0 0 chr1 115089605 115089640 -127574713 + (TG)n Simple_repeat Simple_repeat 1 35 0 329 331 57 0 chr1 115089642 115089766 -127574587 - HAL1 LINE L1 -1622 885 755 225 314 93 0 chr1 115089897 115089983 -127574370 - HAL1 LINE L1 -1783 724 631 495 368 45 19 chr1 115090181 115090556 -127573797 - HAL1 LINE L1 -2118 389 5 188 265 20 0 chr1 115090888 115090937 -127573416 - L2 LINE L2 -2 3311 3262 223 328 84 8 chr1 115091680 115091799 -127572554 + L3 LINE CR1 1434 1561 -16 198 103 0 0 chr1 115092522 115092551 -127571802 + (A)n Simple_repeat Simple_repeat 1 29 0 524 333 43 24 chr1 115093481 115093736 -127570617 + MIR SINE MIR 2 261 -1 217 333 136 25 chr1 115094132 115094232 -127570121 + L3 LINE CR1 185 273 -1304 300 70 0 0 chr1 115094232 115094275 -127570078 + (TG)n Simple_repeat Simple_repeat 1 43 0 217 333 136 25 chr1 115094275 115094336 -127570017 + L3 LINE CR1 273 364 -1213 1454 87 0 99 chr1 115094554 115094806 -127569547 - MER30 DNA MER1_type 0 230 4 274 399 26 10 chr1 115095130 115095323 -127569030 + L3 LINE CR1 401 596 -981 650 327 98 17 chr1 115095936 115096478 -127567875 - L1MC4a LINE L1 -1886 5922 5337 205 286 16 16 chr1 115096608 115096671 -127567682 - L2 LINE L2 -452 2862 2800 241 232 9 18 chr1 115096904 115097016 -127567337 + A-rich Low_complexity Low_complexity 3 113 0 252 224 0 0 chr1 115097161 115097210 -127567143 - MER112 DNA MER1_type -204 56 8 371 298 0 40 chr1 115097565 115097716 -127566637 + MLT1F LTR MaLR 390 534 -8 581 293 67 39 chr1 115097728 115098011 -127566342 - L2 LINE L2 -142 3171 2881 1781 184 96 6 chr1 115098030 115098383 -127565970 - MSTA LTR MaLR -2 426 42 2189 147 17 11 chr1 115098395 115098755 -127565598 - MSTA-int LTR MaLR 0 1651 1290 * 9817 103 20 22 chr1 115098753 115100186 -127564167 + THE1A-int LTR MaLR 150 1580 0 2117 127 8 30 chr1 115100186 115100548 -127563805 + THE1A LTR MaLR 1 354 -1 1187 248 15 4 chr1 115100549 115100815 -127563538 - MSTA-int LTR MaLR -801 850 582 1790 105 70 18 chr1 115100923 115101208 -127563145 - THE1B LTR MaLR -64 300 1 1034 154 58 50 chr1 115101208 115101467 -127562886 - THE1C LTR MaLR -114 261 1 2943 145 34 19 chr1 115101468 115102005 -127562348 + L1MC1 LINE L1 5746 6290 -43 1948 145 7 3 chr1 115102345 115102680 -127561673 - AluSx SINE Alu 0 312 1 26 64 0 0 chr1 115102761 115102808 -127561545 + AT_rich Low_complexity Low_complexity 1 47 0 365 337 29 58 chr1 115103176 115103419 -127560934 + L1MEd LINE L1 4 239 -5880 292 250 0 17 chr1 115103694 115103754 -127560599 + L1MEd LINE L1 591 649 -5470 287 269 120 30 chr1 115103783 115103833 -127560520 + L1MEd LINE L1 764 808 -5492 1300 211 125 25 chr1 115103833 115104193 -127560160 - MSTD LTR MaLR 0 396 1 287 269 120 30 chr1 115104193 115104709 -127559644 + L1MEd LINE L1 808 1422 -4878 261 231 139 9 chr1 115105098 115105206 -127559147 + L1M4 LINE L1 4732 4853 -1293 44 0 0 0 chr1 115105547 115105591 -127558762 + AT_rich Low_complexity Low_complexity 1 44 0 24 85 0 0 chr1 115105946 115106005 -127558348 + AT_rich Low_complexity Low_complexity 1 59 0 601 319 61 16 chr1 115106496 115106806 -127557547 - HAL1b LINE L1 -769 579 256 46 86 0 0 chr1 115106821 115106937 -127557416 + AT_rich Low_complexity Low_complexity 1 116 0 182 354 197 29 chr1 115107280 115107873 -127556480 + L2 LINE L2 2070 2762 -552 218 369 24 0 chr1 115108285 115108369 -127555984 + L2 LINE L2 2965 3050 -222 2199 76 0 47 chr1 115108508 115108825 -127555528 + AluY SINE Alu 1 302 -9 358 291 23 0 chr1 115109221 115109307 -127555046 + MER58 DNA MER1_type 128 2420 0 436 285 124 0 chr1 115109317 115109503 -127554850 + MLT1F1 LTR MaLR 33 241 -326 1135 184 48 51 chr1 115109657 115109950 -127554403 + L1ME3A LINE L1 5866 6157 -13 2140 96 3 0 chr1 115110275 115110577 -127553776 - L1PA13 LINE L1 0 6163 5861 198 0 0 0 chr1 115110577 115110599 -127553754 + (T)n Simple_repeat Simple_repeat 1 22 0 349 289 65 76 chr1 115111248 115111502 -127552851 - MIR SINE MIR -1 261 11 336 277 102 24 chr1 115111508 115111674 -127552679 - L1ME4a LINE L1 -105 6016 5838 382 326 21 43 chr1 115111815 115112048 -127552305 - MLT1I LTR MaLR -110 299 72 1279 196 90 42 chr1 115112840 115113197 -127551156 + MLT1A2 LTR MaLR 1 374 0 298 289 26 26 chr1 115113956 115114070 -127550283 + MLT1K LTR MaLR 460 573 -15 562 342 107 19 chr1 115114085 115114597 -127549756 - L2 LINE L2 -527 2787 2231 1286 139 2 27 chr1 115114833 115115071 -127549282 + MER4B LTR ERV1 2 206 -404 * 1881 136 3 23 chr1 115115068 115115370 -127548983 + MER4E LTR ERV1 484 779 0 3052 152 35 61 chr1 115115622 115116248 -127548105 + MER4B LTR ERV1 1 610 0 372 324 47 27 chr1 115119874 115120022 -127544331 - MIR SINE MIR -108 154 4 1014 219 64 25 chr1 115120162 115120554 -127543799 + LTR37A LTR ERV1 20 426 0 1613 223 64 28 chr1 115122310 115122745 -127541608 + MLT1C LTR MaLR 13 463 -4 387 320 39 28 chr1 115123412 115123593 -127540760 + MIR SINE MIR 4 186 -76 575 331 45 20 chr1 115124245 115124490 -127539863 + MIR SINE MIR 2 252 -10 972 263 96 45 chr1 115124883 115125301 -127539052 - LTR16A1 LTR ERVL -10 447 9 303 333 30 10 chr1 115125468 115125567 -127538786 - HERV16 LTR ERVL -3422 1574 1474 666 109 0 0 chr1 115125775 115125876 -127538477 + (TATAG)n Simple_repeat Simple_repeat 2 102 0 849 344 33 6 chr1 115125876 115126237 -127538116 - HERV16 LTR ERVL -3828 1168 798 304 366 66 26 chr1 115126496 115126922 -127537431 - HERV16 LTR ERVL -4340 656 214 309 256 26 0 chr1 115127104 115127182 -127537171 - LTR16A1 LTR ERVL -2 455 376 261 235 156 91 chr1 115127167 115127410 -127536943 - LTR16A1 LTR ERVL -196 261 3 * 230 351 88 44 chr1 115128960 115129256 -127535097 + L2 LINE L2 3005 3313 0 257 218 0 0 chr1 115130774 115130829 -127533524 - L2 LINE L2 -4 3309 3255 21 89 0 0 chr1 115131242 115131298 -127533055 + AT_rich Low_complexity Low_complexity 1 56 0 2161 113 0 3 chr1 115131623 115131923 -127532430 - AluSc SINE Alu -10 299 1 1464 222 4 0 chr1 115131924 115132199 -127532154 + MLT2B2 LTR ERVL 3 278 -237 1507 102 0 0 chr1 115132230 115132426 -127531927 - AluY SINE Alu -16 295 100 438 20 0 0 chr1 115132520 115132571 -127531782 + (TA)n Simple_repeat Simple_repeat 2 52 0 1950 122 22 29 chr1 115132574 115132885 -127531468 - AluSc SINE Alu 0 309 1 1150 197 17 13 chr1 115133045 115133284 -127531069 + MER82 DNA MER2_type 25 264 -389 1806 105 4 11 chr1 115133284 115133550 -127530803 + THE1C-int LTR MaLR 1317 1580 0 1880 158 46 27 chr1 115133550 115133917 -127530436 + THE1C LTR MaLR 1 374 -1 511 239 17 8 chr1 115133917 115134034 -127530319 - MER20 DNA MER1_type -95 124 7 23 0 0 0 chr1 115134429 115134452 -127529901 + AT_rich Low_complexity Low_complexity 1 23 0 943 378 82 14 chr1 115134561 115135464 -127528889 - L2 LINE L2 -4 3309 2329 2077 133 0 3 chr1 115137536 115137857 -127526496 + AluSx SINE Alu 1 320 0 496 299 92 22 chr1 115139482 115139666 -127524687 - MLT1H1 LTR MaLR -41 514 318 7181 203 17 53 chr1 115139811 115141404 -127522949 + L1MA2 LINE L1 13 1548 -6017 10222 152 19 8 chr1 115141413 115144410 -127519943 + L1MA2 LINE L1 4687 7722 -1 27 0 0 0 chr1 115144410 115144437 -127519916 + AT_rich Low_complexity Low_complexity 1 27 0 891 175 6 0 chr1 115144470 115144636 -127519717 - MER2 DNA MER2_type -135 210 44 893 177 7 0 chr1 115145069 115145210 -127519143 + FRAM SINE Alu 7 148 -28 29 0 0 0 chr1 115145469 115145498 -127518855 + AT_rich Low_complexity Low_complexity 1 29 0 33 25 0 0 chr1 115145752 115145792 -127518561 + AT_rich Low_complexity Low_complexity 1 40 0 287 356 67 17 chr1 115146316 115146496 -127517857 - MIR SINE MIR 0 262 74 21 0 0 0 chr1 115146911 115146932 -127517421 + AT_rich Low_complexity Low_complexity 1 21 0 1982 140 0 0 chr1 115147806 115148137 -127516216 - AluSx SINE Alu 0 331 1 507 298 60 65 chr1 115148485 115148854 -127515499 - MER20B DNA MER1_type -369 414 48 271 344 103 10 chr1 115148949 115149144 -127515209 - L2 LINE L2 -528 2786 2574 28 0 0 0 chr1 115149155 115149183 -127515170 + AT_rich Low_complexity Low_complexity 1 28 0 458 301 5 87 chr1 115149754 115149950 -127514403 - MER5A DNA MER1_type -9 180 1 537 283 65 7 chr1 115150245 115150383 -127513970 + MER5B DNA MER1_type 32 177 -1 11355 119 27 32 chr1 115150923 115152887 -127511466 - L1P3 LINE L1 -4462 1999 11 255 31 0 0 chr1 115153800 115153832 -127510521 + (TC)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr1 115154209 115154230 -127510123 + (TA)n Simple_repeat Simple_repeat 1 21 0 3531 199 50 10 chr1 115154359 115155083 -127509270 + L1M4c LINE L1 16 768 -5616 * 3737 193 45 56 chr1 115155081 115156105 -127508248 + L1M4c LINE L1 1118 2130 -4254 1548 137 16 37 chr1 115156105 115156416 -127507937 + THE1B LTR MaLR 3 362 -2 5650 125 91 2 chr1 115156419 115156863 -127507490 + THE1B-int LTR MaLR 2 405 -1175 480 35 0 0 chr1 115156863 115156921 -127507432 + (TA)n Simple_repeat Simple_repeat 2 59 0 5650 125 91 2 chr1 115156921 115157380 -127506973 + THE1B-int LTR MaLR 405 985 -595 2178 96 10 0 chr1 115157384 115157687 -127506666 + THE1B-int LTR MaLR 1275 1580 0 1911 169 16 27 chr1 115157687 115158055 -127506298 + THE1B LTR MaLR 1 364 0 1079 151 44 20 chr1 115158065 115158317 -127506036 + L1M4c LINE L1 1871 2128 -4256 999 156 17 28 chr1 115158317 115158497 -127505856 + THE1B LTR MaLR 1 178 -186 1454 227 47 87 chr1 115158523 115159041 -127505312 - L1MD1 LINE L1 -347 5819 5326 * 1861 275 42 46 chr1 115159040 115159994 -127504359 - L1M4 LINE L1 -755 5391 4442 1013 116 7 7 chr1 115159994 115160141 -127504212 - AluSc SINE Alu -162 147 1 931 293 17 14 chr1 115160141 115160435 -127503918 + LTR52 LTR ERVL 35 329 -92 297 0 0 0 chr1 115160435 115160468 -127503885 + (TG)n Simple_repeat Simple_repeat 1 33 0 1138 287 20 20 chr1 115160572 115161018 -127503335 - L1M4 LINE L1 -1969 4177 3732 11193 208 49 19 chr1 115161023 115164051 -127500302 + L1P4 LINE L1 798 3919 -2930 7220 106 11 16 chr1 115164060 115165122 -127499231 + MER11C LTR ERVK 1 1057 -14 5881 192 15 137 chr1 115165142 115167952 -127496401 + L1P4 LINE L1 3926 6373 -495 247 292 21 10 chr1 115167949 115168045 -127496308 + L1ME1 LINE L1 3623 3719 -2427 * 935 98 8 0 chr1 115168132 115168254 -127496099 + AluY SINE Alu 1 123 -188 25 0 0 0 chr1 115168283 115168308 -127496045 + AT_rich Low_complexity Low_complexity 1 25 0 801 254 5 19 chr1 115168308 115168513 -127495840 - L1MDa LINE L1 -6258 282 81 229 214 54 18 chr1 115168520 115168576 -127495777 + MLT1I LTR MaLR 98 155 -254 1704 271 35 40 chr1 115168883 115169533 -127494820 + L1ME1 LINE L1 5515 6161 -5 504 276 0 26 chr1 115170457 115170609 -127493744 - MIR SINE MIR -15 247 100 1288 157 35 0 chr1 115170647 115170876 -127493477 + MLT1C LTR MaLR 29 265 -202 181 320 20 20 chr1 115170906 115171006 -127493347 + MIR SINE MIR 100 199 -63 1019 235 0 0 chr1 115171013 115171213 -127493140 + MLT1C LTR MaLR 268 467 0 198 103 0 0 chr1 115172891 115172920 -127491433 + (T)n Simple_repeat Simple_repeat 1 29 0 273 140 0 0 chr1 115172933 115172990 -127491363 + (T)n Simple_repeat Simple_repeat 1 57 0 6163 10 0 0 chr1 115172992 115173689 -127490664 - L1HS LINE L1 -1 6154 5458 5471 19 0 0 chr1 115173687 115174393 -127489960 + L1P1 LINE L1 4745 5450 -705 * 22 56 0 0 chr1 115175453 115175489 -127488864 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr1 115175544 115175582 -127488771 + AT_rich Low_complexity Low_complexity 1 38 0 363 316 12 36 chr1 115175883 115176051 -127488302 + MIR SINE MIR 49 212 -50 27 81 0 0 chr1 115176593 115176655 -127487698 + AT_rich Low_complexity Low_complexity 1 62 0 21 57 0 0 chr1 115176995 115177030 -127487323 + AT_rich Low_complexity Low_complexity 1 35 0 200 216 0 0 chr1 115177231 115177268 -127487085 + A-rich Low_complexity Low_complexity 2 38 0 32 43 0 0 chr1 115177570 115177616 -127486737 + AT_rich Low_complexity Low_complexity 1 46 0 28 29 0 0 chr1 115178055 115178090 -127486263 + AT_rich Low_complexity Low_complexity 1 35 0 230 290 57 52 chr1 115179137 115179330 -127485023 + L2 LINE L2 3105 3298 -15 199 256 122 0 chr1 115181456 115181538 -127482815 + MIR SINE MIR 74 165 -97 28 29 0 0 chr1 115181638 115181673 -127482680 + AT_rich Low_complexity Low_complexity 1 35 0 187 175 25 25 chr1 115182047 115182087 -127482266 - L2 LINE L2 -13 3300 3261 * 363 194 71 20 chr1 115182053 115182151 -127482202 - MIR SINE MIR -12 250 148 583 137 29 0 chr1 115182173 115182275 -127482078 - L1MB4 LINE L1 -353 5827 5723 * 5319 263 38 12 chr1 115182268 115183205 -127481148 - L1M4c LINE L1 -2089 4293 3382 189 0 0 0 chr1 115183205 115183226 -127481127 + (TTG)n Simple_repeat Simple_repeat 2 22 0 5319 263 38 12 chr1 115183226 115183897 -127480456 - L1M4c LINE L1 -3000 3382 2730 572 91 0 0 chr1 115183897 115183974 -127480379 + MADE1 DNA Mariner 1 77 -3 5319 263 38 12 chr1 115183974 115184584 -127479769 - L1M4c LINE L1 -3652 2730 1971 521 222 5 4 chr1 115184704 115184935 -127479418 + AluJ SINE Alu 1 312 0 830 123 26 22 chr1 115184938 115185166 -127479187 + GA-rich Low_complexity Low_complexity 1 229 0 27 29 0 0 chr1 115186434 115186468 -127477885 + AT_rich Low_complexity Low_complexity 1 34 0 2755 285 102 7 chr1 115186920 115188010 -127476343 + L1MEc LINE L1 38 1230 -5166 813 307 47 34 chr1 115188149 115188676 -127475677 + L1MEc LINE L1 1440 1973 -4423 2968 168 24 27 chr1 115188689 115189236 -127475117 + MSTA-int LTR MaLR 1036 1580 0 451 180 192 11 chr1 115189236 115189365 -127474988 + MSTA LTR MaLR 2 169 -288 * 491 183 0 0 chr1 115189354 115189436 -127474917 + MSTA LTR MaLR 347 428 0 17841 187 27 11 chr1 115189436 115192780 -127471573 + L1MA2 LINE L1 221 3509 -4214 1806 164 148 0 chr1 115192780 115193153 -127471200 - MSTA LTR MaLR 0 428 1 17841 187 27 11 chr1 115193153 115197180 -127467173 + L1MA2 LINE L1 3509 7723 0 1293 151 0 0 chr1 115197737 115197929 -127466424 + L1PA8 LINE L1 10 201 -6260 * 29014 121 8 18 chr1 115197925 115203561 -127460792 + L1PA8 LINE L1 939 6487 0 522 339 44 30 chr1 115203810 115204173 -127460180 - MLT1J1 LTR MaLR -61 385 18 355 323 84 22 chr1 115204212 115204438 -127459915 - L1ME3A LINE L1 0 6170 5931 395 288 47 0 chr1 115204473 115204664 -127459689 - L1ME3A LINE L1 -220 5950 5751 1891 208 18 65 chr1 115204692 115205182 -127459171 - MER66B LTR ERV1 0 486 20 691 277 88 19 chr1 115205185 115205492 -127458861 - L1ME3A LINE L1 -438 5724 5397 367 285 131 30 chr1 115205598 115206057 -127458296 - L1ME3A LINE L1 -840 5306 4802 21 57 0 0 chr1 115207558 115207593 -127456760 + AT_rich Low_complexity Low_complexity 1 35 0 589 262 53 30 chr1 115208447 115208672 -127455681 - MLT1F1 LTR MaLR -346 244 8 329 240 159 56 chr1 115208674 115208995 -127455358 - L1MC4a LINE L1 -1554 6254 5901 600 349 20 0 chr1 115209003 115209255 -127455098 + L1MC4 LINE L1 6820 7076 -966 394 255 105 5 chr1 115209404 115209600 -127454753 + L1MC5 LINE L1 7246 7415 -393 244 348 8 0 chr1 115209809 115209927 -127454426 + L1MC4 LINE L1 7781 7899 -143 216 316 119 23 chr1 115210912 115211089 -127453264 + MIR SINE MIR 56 249 -13 588 347 40 0 chr1 115212157 115212405 -127451948 + MIR SINE MIR 5 262 0 23 0 0 0 chr1 115212992 115213015 -127451338 + AT_rich Low_complexity Low_complexity 1 23 0 3334 175 8 14 chr1 115213019 115213654 -127450699 - L1MA6 LINE L1 -10 6290 5660 2738 167 69 0 chr1 115213654 115214303 -127450050 + L1M2 LINE L1 4794 5506 -794 264 59 0 0 chr1 115214303 115214337 -127450016 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2738 167 69 0 chr1 115214337 115214462 -127449891 + L1M2 LINE L1 5506 5621 -679 261 304 26 61 chr1 115215793 115215908 -127448445 + L2 LINE L2 2945 3055 -217 2156 181 105 23 chr1 115216278 115216792 -127447561 - L1MA8 LINE L1 -3 6288 5733 214 319 69 0 chr1 115217419 115217491 -127446862 + L2 LINE L2 3160 3236 -36 346 215 182 50 chr1 115218627 115218748 -127445605 - L2 LINE L2 0 3313 3177 1549 214 3 3 chr1 115218767 115219066 -127445287 + AluJo SINE Alu 5 303 -9 197 277 109 50 chr1 115219391 115219510 -127444843 - MIR SINE MIR -102 160 35 26 30 0 0 chr1 115219913 115219946 -127444407 + AT_rich Low_complexity Low_complexity 1 33 0 202 179 0 149 chr1 115220111 115220178 -127444175 - MIR SINE MIR -86 176 120 4518 247 64 28 chr1 115220366 115220464 -127443889 - L1M4 LINE L1 -890 5256 5163 1658 188 7 0 chr1 115220464 115220768 -127443585 - AluJb SINE Alu -6 306 1 4518 247 64 28 chr1 115220768 115220971 -127443382 - L1M4 LINE L1 -983 5163 4969 180 0 0 0 chr1 115220971 115220991 -127443362 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4518 247 64 28 chr1 115220991 115222253 -127442100 - L1M4 LINE L1 -1177 4969 3636 1052 193 14 72 chr1 115222547 115222832 -127441521 + MER31A LTR ERV1 3 270 -215 1585 219 23 9 chr1 115222832 115223174 -127441179 - MLT1A1 LTR MaLR 0 365 19 999 137 21 68 chr1 115223196 115223430 -127440923 + MER31A LTR ERV1 263 485 0 216 97 0 0 chr1 115223665 115223696 -127440657 + (CA)n Simple_repeat Simple_repeat 2 32 0 349 228 76 0 chr1 115223910 115224002 -127440351 + L2 LINE L2 2745 2843 -471 662 101 0 0 chr1 115225032 115225121 -127439232 + MLT1B LTR MaLR 302 390 0 351 268 191 22 chr1 115225121 115225302 -127439051 + LTR16B LTR ERVL 253 464 0 35 0 0 0 chr1 115225964 115225999 -127438354 + AT_rich Low_complexity Low_complexity 1 35 0 999 304 30 3 chr1 115226956 115227288 -127437065 - MER58B DNA MER1_type 0 341 1 1122 131 11 0 chr1 115228046 115228222 -127436131 - L1PA10 LINE L1 0 6168 5991 25 0 0 0 chr1 115228749 115228774 -127435579 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr1 115229689 115229734 -127434619 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr1 115230002 115230038 -127434315 + AT_rich Low_complexity Low_complexity 1 36 0 207 200 0 0 chr1 115230123 115230168 -127434185 + A-rich Low_complexity Low_complexity 1 45 0 402 370 56 36 chr1 115230684 115231076 -127433277 + L2 LINE L2 2174 2573 -741 * 717 307 57 48 chr1 115231074 115231406 -127432947 - L2 LINE L2 -380 2934 2600 2285 194 12 24 chr1 115231479 115231988 -127432365 + L1MB1 LINE L1 5664 6166 -2 279 206 129 24 chr1 115232174 115232344 -127432009 + L1ME4a LINE L1 5262 5449 -2359 752 164 0 0 chr1 115232566 115232688 -127431665 - FLAM_C SINE Alu -21 122 1 342 345 53 6 chr1 115232720 115232891 -127431462 + L1ME4a LINE L1 5725 5903 -218 992 166 12 6 chr1 115232956 115233125 -127431228 - MER70A LTR ERVL 0 472 303 33 0 0 0 chr1 115234408 115234441 -127429912 + AT_rich Low_complexity Low_complexity 1 33 0 207 69 0 0 chr1 115234746 115234775 -127429578 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1254 292 102 32 chr1 115234850 115236623 -127427730 + L1ME1 LINE L1 20 1922 -4339 27 29 0 0 chr1 115236711 115236745 -127427608 + AT_rich Low_complexity Low_complexity 1 34 0 1273 250 0 0 chr1 115236817 115237085 -127427268 + AluJo SINE Alu 13 280 -32 180 0 0 0 chr1 115237085 115237105 -127427248 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1600 250 117 27 chr1 115237110 115237965 -127426388 + L1ME1 LINE L1 2352 3283 -2797 2200 91 3 0 chr1 115237965 115238261 -127426092 + AluY SINE Alu 2 298 -13 761 165 24 59 chr1 115238271 115238441 -127425912 + L1MB3 LINE L1 15 178 -6206 * 8380 233 37 41 chr1 115238435 115238997 -127425356 + L1MB3 LINE L1 2508 3071 -3348 2437 73 0 6 chr1 115238997 115239310 -127425043 + AluY SINE Alu 1 311 0 8380 233 37 41 chr1 115239310 115242647 -127421706 + L1MB3 LINE L1 3071 6416 -3 2606 293 60 37 chr1 115242632 115243658 -127420695 + L1ME1 LINE L1 3242 4245 -1835 * 1160 182 105 80 chr1 115243658 115244097 -127420256 + LTR7 LTR ERV1 1 450 0 2606 293 60 37 chr1 115244097 115245024 -127419329 + L1ME1 LINE L1 4245 5149 -931 1641 238 58 90 chr1 115245186 115245624 -127418729 + L1ME1 LINE L1 5377 5940 -328 2102 97 40 3 chr1 115245624 115245924 -127418429 - AluY SINE Alu 0 311 1 1641 238 58 90 chr1 115245924 115246239 -127418114 + L1ME1 LINE L1 5940 6264 -4 505 297 40 29 chr1 115247784 115247959 -127416394 + MIR SINE MIR 74 250 -12 22 56 0 0 chr1 115248182 115248218 -127416135 + AT_rich Low_complexity Low_complexity 1 36 0 3251 231 167 35 chr1 115248293 115249530 -127414823 + MER52A LTR ERV1 2 716 -304 2092 208 80 72 chr1 115249506 115250044 -127414309 + MER52A LTR ERV1 1209 1750 -5 * 436 331 40 31 chr1 115251046 115251372 -127412981 + L1ME LINE L1 5320 5648 -473 307 337 11 0 chr1 115252194 115252286 -127412067 - LTR8A LTR ERV1 0 727 635 9618 240 37 9 chr1 115252289 115256261 -127408092 + L1MC1 LINE L1 2237 6317 -16 203 250 180 30 chr1 115256379 115256479 -127407874 + MIR SINE MIR 21 135 -127 2198 79 4 4 chr1 115257149 115257427 -127406926 + AluSp SINE Alu 12 289 -24 290 253 158 0 chr1 115258016 115258111 -127406242 + MLT1K LTR MaLR 454 563 -25 198 364 64 21 chr1 115258534 115258674 -127405679 - L2 LINE L2 -6 3307 3162 192 97 0 0 chr1 115258755 115258786 -127405567 + (TG)n Simple_repeat Simple_repeat 1 31 0 388 326 64 7 chr1 115261185 115261326 -127403027 - L2 LINE L2 -4 3309 3161 201 240 13 27 chr1 115261952 115262027 -127402326 + (TA)n Simple_repeat Simple_repeat 1 74 0 26 30 0 0 chr1 115262162 115262195 -127402158 + AT_rich Low_complexity Low_complexity 1 33 0 34 0 0 0 chr1 115263970 115264004 -127400349 + AT_rich Low_complexity Low_complexity 1 34 0 322 249 308 12 chr1 115264353 115264522 -127399831 - HAL1 LINE L1 -1089 1418 1200 252 278 242 22 chr1 115264527 115264677 -127399676 - HAL1 LINE L1 -1415 1092 976 321 47 0 0 chr1 115264677 115264720 -127399633 + (TG)n Simple_repeat Simple_repeat 1 43 0 252 278 242 22 chr1 115264720 115264846 -127399507 - HAL1 LINE L1 -1531 976 755 503 345 133 41 chr1 115264977 115265636 -127398717 - HAL1 LINE L1 -1783 724 5 188 265 20 0 chr1 115265968 115266017 -127398336 - L2 LINE L2 -2 3311 3262 224 328 84 8 chr1 115266760 115266879 -127397474 + L3 LINE CR1 1434 1561 -16 189 107 0 0 chr1 115267602 115267630 -127396723 + (A)n Simple_repeat Simple_repeat 1 28 0 524 333 43 24 chr1 115268560 115268815 -127395538 + MIR SINE MIR 2 261 -1 217 333 136 25 chr1 115269211 115269311 -127395042 + L3 LINE CR1 185 273 -1304 426 53 0 0 chr1 115269311 115269368 -127394985 + (TG)n Simple_repeat Simple_repeat 1 57 0 217 333 136 25 chr1 115269368 115269429 -127394924 + L3 LINE CR1 273 364 -1213 1454 87 0 99 chr1 115269647 115269899 -127394454 - MER30 DNA MER1_type 0 230 4 274 399 26 10 chr1 115270223 115270416 -127393937 + L3 LINE CR1 401 596 -981 569 333 57 16 chr1 115271029 115271417 -127392936 - L1MC4a LINE L1 -1886 5922 5519 842 141 135 25 chr1 115271428 115271591 -127392762 - MSTA LTR MaLR -247 181 1 344 259 121 46 chr1 115271611 115271785 -127392568 - L2 LINE L2 -470 2844 2658 3497 181 20 27 chr1 115271788 115272046 -127392307 + MER67C LTR ERV1 4 262 -448 357 82 0 0 chr1 115272046 115272095 -127392258 + (CA)n Simple_repeat Simple_repeat 2 50 0 3497 181 20 27 chr1 115272095 115272543 -127391810 + MER67C LTR ERV1 262 705 -5 232 379 21 0 chr1 115272546 115272641 -127391712 - L2 LINE L2 -653 2661 2565 21 0 0 0 chr1 115273433 115273454 -127390899 + AT_rich Low_complexity Low_complexity 1 21 0 285 254 212 0 chr1 115274756 115274874 -127389479 - L2 LINE L2 0 3313 3171 291 354 0 0 chr1 115275201 115275300 -127389053 + L2 LINE L2 3197 3295 -18 361 379 43 12 chr1 115275402 115275658 -127388695 - L2 LINE L2 -526 2788 2525 242 286 0 0 chr1 115275877 115275933 -127388420 - L2 LINE L2 0 3313 3258 189 333 31 31 chr1 115276007 115276103 -127388250 - MIR SINE MIR -3 259 164 2136 110 3 7 chr1 115276123 115276423 -127387930 - AluSq SINE Alu -12 301 3 2002 282 89 12 chr1 115276429 115277114 -127387239 + L2 LINE L2 2060 2797 -517 357 198 45 36 chr1 115277169 115277280 -127387073 + MLT1C LTR MaLR 70 181 -286 * 630 300 11 11 chr1 115277254 115277434 -127386919 + MLT1C LTR MaLR 288 467 0 384 361 36 40 chr1 115277445 115277694 -127386659 + L2 LINE L2 2827 3074 -239 2230 43 40 10 chr1 115277923 115278222 -127386131 + AluY SINE Alu 1 308 -3 283 322 35 17 chr1 115278293 115278408 -127385945 + MIR3 SINE MIR 82 198 -10 23 68 0 0 chr1 115279730 115279774 -127384579 + AT_rich Low_complexity Low_complexity 1 44 0 615 241 111 32 chr1 115280206 115280522 -127383831 + LTR37B LTR ERV1 126 466 -2 856 220 55 0 chr1 115280665 115280865 -127383488 + L1 LINE L1 2669 2879 -3267 3313 32 0 8 chr1 115281213 115281615 -127382738 + L1PA5 LINE L1 5756 6154 0 3836 237 35 15 chr1 115283096 115284265 -127380088 + L1 LINE L1 2867 4058 -2088 * 26067 40 43 2 chr1 115284263 115287596 -127376757 - L1P LINE L1 -2101 4045 578 794 41 0 0 chr1 115287563 115287661 -127376692 - L1P LINE L1 -6048 98 1 * 22 35 0 0 chr1 115287675 115287704 -127376649 + AT_rich Low_complexity Low_complexity 1 29 0 7018 212 32 14 chr1 115287708 115289641 -127374712 + L1PA16 LINE L1 3503 5499 -667 1622 172 8 0 chr1 115289641 115289909 -127374444 - AluSx SINE Alu -7 305 36 7018 212 32 14 chr1 115289909 115290590 -127373763 + L1PA16 LINE L1 5499 6166 0 303 179 244 0 chr1 115290803 115290881 -127373472 + L1ME1 LINE L1 6057 6153 -13 25 31 0 0 chr1 115291135 115291167 -127373186 + AT_rich Low_complexity Low_complexity 1 32 0 229 235 62 25 chr1 115293082 115293163 -127371190 + MLT1K LTR MaLR 345 428 -160 189 303 162 30 chr1 115293235 115293433 -127370920 + L2 LINE L2 3001 3224 -89 217 348 55 55 chr1 115293662 115293826 -127370527 + L2 LINE L2 2599 2762 -552 341 232 89 95 chr1 115293945 115294113 -127370240 + L2 LINE L2 1 167 -3147 1539 210 114 48 chr1 115294413 115294851 -127369502 + MLT1D LTR MaLR 20 486 -19 1765 157 19 28 chr1 115294930 115295248 -127369105 - MLT1A1 LTR MaLR -50 315 1 22 0 0 0 chr1 115295420 115295442 -127368911 + AT_rich Low_complexity Low_complexity 1 22 0 308 220 22 44 chr1 115295519 115295610 -127368743 + MLT1K LTR MaLR 487 575 -13 273 29 0 0 chr1 115296210 115296244 -127368109 + (CA)n Simple_repeat Simple_repeat 1 34 0 615 155 52 0 chr1 115296652 115296768 -127367585 - L1MB2 LINE L1 -65 6106 5985 508 247 6 84 chr1 115296768 115296934 -127367419 - MLT1D LTR MaLR -333 172 20 369 127 0 0 chr1 115297065 115297120 -127367233 - L1MB2 LINE L1 -187 5981 5927 1753 195 98 0 chr1 115297120 115297479 -127366874 + MSTD LTR MaLR 1 394 -2 208 64 64 21 chr1 115297484 115297531 -127366822 + (TA)n Simple_repeat Simple_repeat 1 49 0 186 43 0 0 chr1 115297950 115297973 -127366380 + (GA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr1 115298410 115298438 -127365915 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 115298907 115298933 -127365420 + AT_rich Low_complexity Low_complexity 1 26 0 272 286 79 34 chr1 115299337 115299515 -127364838 + L1MEd LINE L1 960 1145 -4974 24 32 0 0 chr1 115299536 115299567 -127364786 + AT_rich Low_complexity Low_complexity 1 31 0 1920 187 5 50 chr1 115299654 115300050 -127364303 + MLT1B LTR MaLR 13 390 0 299 329 193 8 chr1 115300208 115300451 -127363902 + L2 LINE L2 2631 2918 -396 524 264 17 11 chr1 115300473 115300647 -127363706 - MER5B DNA MER1_type -2 176 2 1548 177 49 44 chr1 115301165 115301550 -127362803 - MLT1B LTR MaLR 0 390 4 771 174 67 62 chr1 115301578 115301773 -127362580 + AluJo SINE Alu 87 282 -30 1611 232 89 9 chr1 115303643 115304091 -127360262 + MLT2B1 LTR ERVL 1 484 -36 33 66 0 0 chr1 115304092 115304153 -127360200 + AT_rich Low_complexity Low_complexity 1 61 0 232 143 0 41 chr1 115304296 115304345 -127360008 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 274 323 100 23 chr1 115304769 115304899 -127359454 - L2 LINE L2 -12 3260 3121 216 355 121 39 chr1 115305162 115305494 -127358859 - L2 LINE L2 -449 2865 2507 326 276 129 9 chr1 115305560 115305676 -127358677 - MLT1K LTR MaLR 0 588 459 2171 50 0 63 chr1 115305929 115306251 -127358102 + AluY SINE Alu 1 303 0 200 167 48 0 chr1 115306573 115306615 -127357738 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 286 343 159 50 chr1 115307071 115307529 -127356824 + L2 LINE L2 2224 2731 -583 803 257 118 74 chr1 115309419 115309836 -127354517 + LTR16A LTR ERVL 16 450 0 21 71 0 0 chr1 115311829 115311871 -127352482 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr1 115311980 115312016 -127352337 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr1 115312064 115312093 -127352260 + AT_rich Low_complexity Low_complexity 1 29 0 1030 173 12 0 chr1 115312289 115312462 -127351891 - FAM SINE Alu 0 175 1 2447 136 21 40 chr1 115312631 115313059 -127351294 - Tigger2a DNA MER2_type 0 434 15 1297 42 0 18 chr1 115313737 115313904 -127350449 + L1PA5 LINE L1 5988 6151 -3 338 250 0 12 chr1 115313931 115314011 -127350342 - Charlie8 DNA MER1_type -1971 446 368 298 299 0 0 chr1 115314160 115314237 -127350116 - Charlie8 DNA MER1_type -2187 230 154 2141 111 7 7 chr1 115315043 115315349 -127349004 + AluSp SINE Alu 1 306 -7 211 420 45 8 chr1 115315759 115316111 -127348242 - L2 LINE L2 -1128 2186 1822 4465 142 40 80 chr1 115316326 115317384 -127346969 - L1PA16 LINE L1 -9 6157 5144 4476 178 28 49 chr1 115317442 115317823 -127346530 + L1MB8 LINE L1 4930 5318 -860 2129 129 0 0 chr1 115317823 115318133 -127346220 - AluSg SINE Alu 0 310 1 4476 178 28 49 chr1 115318133 115318679 -127345674 + L1MB8 LINE L1 5318 5840 -338 2100 103 3 3 chr1 115318679 115319002 -127345351 + AluSp SINE Alu 1 323 0 4476 178 28 49 chr1 115319002 115319332 -127345021 + L1MB8 LINE L1 5840 6176 -2 13817 192 14 26 chr1 115319403 115323319 -127341034 - L1PA14 LINE L1 0 6161 2271 210 171 0 0 chr1 115323326 115323361 -127340992 + T-rich Low_complexity Low_complexity 2 36 0 2167 238 28 18 chr1 115323413 115323544 -127340809 - L1PA15-16 LINE L1 -3891 2958 2830 19414 34 0 0 chr1 115323544 115326734 -127337619 + L1PA4 LINE L1 2977 6155 0 2167 238 28 18 chr1 115326734 115327248 -127337105 - L1PA15-16 LINE L1 -4019 2830 2333 * 4926 212 6 6 chr1 115327247 115328343 -127336010 - L1 LINE L1 -1135 5011 3917 371 298 110 11 chr1 115328428 115328619 -127335734 + MIR SINE MIR 53 262 0 183 162 0 0 chr1 115328816 115328853 -127335500 + (CA)n Simple_repeat Simple_repeat 1 37 0 28 29 0 0 chr1 115329492 115329527 -127334826 + AT_rich Low_complexity Low_complexity 1 35 0 2067 190 31 0 chr1 115329545 115329961 -127334392 - L1MB1 LINE L1 -1 6167 5739 457 172 0 0 chr1 115329962 115330049 -127334304 - L1MB1 LINE L1 -364 5825 5739 * 2602 183 9 38 chr1 115330046 115330594 -127333759 - L1MB1 LINE L1 -339 5829 5298 5192 214 38 7 chr1 115330719 115331025 -127333328 - L1MB1 LINE L1 -878 5268 4973 1765 151 42 7 chr1 115331025 115331349 -127333004 + AluSx SINE Alu 1 312 0 5192 214 38 7 chr1 115331349 115332277 -127332076 - L1MB1 LINE L1 -1173 4973 3995 21 36 0 0 chr1 115332373 115332401 -127331952 + AT_rich Low_complexity Low_complexity 1 28 0 800 229 33 6 chr1 115332668 115332851 -127331502 - MLT1E1 LTR MaLR 0 654 467 31 26 0 0 chr1 115333986 115334024 -127330329 + AT_rich Low_complexity Low_complexity 1 38 0 4287 181 29 19 chr1 115334182 115334884 -127329469 + Tigger1 DNA MER2_type 1 714 -1704 2134 87 45 0 chr1 115334884 115335170 -127329183 + AluY SINE Alu 1 299 -12 4287 181 29 19 chr1 115335170 115335286 -127329067 + Tigger1 DNA MER2_type 714 827 -1591 981 203 4 2 chr1 115335307 115336995 -127327358 - ALR/Alpha Satellite centromeric -1 1691 1 889 217 8 4 chr1 115337143 115339777 -127324576 - ALR/Alpha Satellite centromeric -1 2643 1 873 228 11 2 chr1 115339893 115343638 -127320715 - ALR/Alpha Satellite centromeric -6 3779 1 327 49 0 0 chr1 115343638 115343679 -127320674 + (A)n Simple_repeat Simple_repeat 1 41 0 1011 208 15 5 chr1 115343681 115349559 -127314794 - ALR/Alpha Satellite centromeric 0 5936 1 4704 145 99 2 chr1 115349559 115350405 -127313948 + Tigger1 DNA MER2_type 866 1793 -625 3181 192 29 16 chr1 115350875 115351310 -127313043 + Tigger1 DNA MER2_type 1781 2228 -190 2042 145 0 0 chr1 115351310 115351606 -127312747 - AluSx SINE Alu -16 296 1 3181 192 29 16 chr1 115351606 115351800 -127312553 + Tigger1 DNA MER2_type 2228 2418 0 23 0 0 0 chr1 115351989 115352012 -127312341 + AT_rich Low_complexity Low_complexity 1 23 0 6013 153 35 15 chr1 115352014 115353836 -127310517 - L1MA2 LINE L1 -7 7716 5857 * 8114 210 20 21 chr1 115353835 115354535 -127309818 - L1MA2 LINE L1 -1933 5632 4933 180 0 0 0 chr1 115354535 115354555 -127309798 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8114 210 20 21 chr1 115354555 115356267 -127308086 - L1MA2 LINE L1 -2632 4933 3223 226 65 0 0 chr1 115356264 115356295 -127308058 - L1MA2 LINE L1 -4707 2858 2828 * 216 366 45 15 chr1 115356384 115356518 -127307835 - L3 LINE CR1 -191 1386 1249 218 217 0 0 chr1 115356585 115356631 -127307722 + (TA)n Simple_repeat Simple_repeat 1 46 0 771 216 0 0 chr1 115356632 115356780 -127307573 - FRAM SINE Alu -31 145 1 9466 60 10 0 chr1 115356874 115358302 -127306051 + L1P LINE L1 3927 5368 -778 6381 66 5 0 chr1 115358402 115359218 -127305135 + L1PA5 LINE L1 5310 6129 -25 209 33 33 0 chr1 115359236 115359266 -127305087 + (TA)n Simple_repeat Simple_repeat 1 31 0 726 326 91 52 chr1 115360217 115360977 -127303376 - L2 LINE L2 -2 3311 2527 404 266 121 40 chr1 115360985 115361364 -127302989 - L1MC5 LINE L1 -44 7917 7508 3578 264 75 56 chr1 115361377 115361984 -127302369 - L1M4c LINE L1 -3905 2741 2147 2071 134 0 0 chr1 115361984 115362275 -127302078 + AluSq SINE Alu 1 291 -22 3578 264 75 56 chr1 115362275 115362292 -127302061 - L1M4c LINE L1 -4499 2147 2132 573 115 0 0 chr1 115362292 115362379 -127301974 + (TA)n Simple_repeat Simple_repeat 2 88 0 447 35 0 0 chr1 115362378 115362435 -127301918 + (GA)n Simple_repeat Simple_repeat 2 58 0 * 3578 264 75 56 chr1 115362379 115363546 -127300807 - L1M4c LINE L1 -4514 2132 971 556 264 41 35 chr1 115363642 115363839 -127300514 - L1M4c LINE L1 -6331 211 14 358 202 105 8 chr1 115363854 115363978 -127300375 - L1MC/D LINE L1 -2367 5441 5306 867 308 70 40 chr1 115364006 115364461 -127299892 + MLT1J LTR MaLR 5 473 -38 2253 325 69 37 chr1 115365731 115367204 -127297149 - L2 LINE L2 -107 3206 1701 246 250 46 28 chr1 115367207 115367315 -127297038 - HAL1 LINE L1 0 2507 2398 1118 167 146 80 chr1 115367463 115367750 -127296603 - AluJb SINE Alu 0 312 7 210 246 35 0 chr1 115367817 115367874 -127296479 + CT-rich Low_complexity Low_complexity 2 60 0 2211 114 0 0 chr1 115368142 115368450 -127295903 - AluSx SINE Alu -4 308 1 185 381 0 0 chr1 115368909 115368993 -127295360 - L2 LINE L2 -189 3083 3000 366 137 41 14 chr1 115370482 115370555 -127293798 - MER46A DNA MER2_type -1 235 161 271 192 14 68 chr1 115370502 115370575 -127293778 + MER46A DNA MER2_type 87 155 -81 * 21 71 0 0 chr1 115370804 115370846 -127293507 + AT_rich Low_complexity Low_complexity 1 42 0 299 316 17 40 chr1 115371176 115371350 -127293003 + MLT1L LTR MaLR 438 607 -8 11541 86 17 0 chr1 115371459 115373845 -127290508 - L1PA6 LINE L1 -11 6143 3726 2566 113 6 3 chr1 115373931 115374294 -127290059 - THE1B LTR MaLR 0 364 1 2012 88 0 25 chr1 115374294 115374578 -127289775 - THE1B-int LTR MaLR 0 1580 1304 2895 169 18 9 chr1 115374694 115375299 -127289054 - THE1B-int LTR MaLR -1007 573 2 1835 171 17 6 chr1 115375301 115375657 -127288696 - THE1B LTR MaLR 0 364 5 431 26 13 53 chr1 115375664 115375740 -127288613 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 24 53 0 0 chr1 115375740 115375778 -127288575 + AT_rich Low_complexity Low_complexity 1 38 0 258 237 54 0 chr1 115375814 115375907 -127288446 - L1ME LINE L1 -237 5884 5787 1542 266 115 44 chr1 115376454 115377189 -127287164 + L1M1 LINE L1 2811 3493 -4072 2225 108 0 0 chr1 115377189 115377494 -127286859 - AluY SINE Alu -6 305 1 1980 151 10 0 chr1 115377504 115377809 -127286544 - AluSx SINE Alu -4 308 1 1542 266 115 44 chr1 115377809 115378627 -127285726 + L1M1 LINE L1 3501 4542 -3023 10031 206 49 21 chr1 115378653 115381128 -127283225 + L1M4c LINE L1 15 2559 -3823 405 200 64 80 chr1 115381141 115381266 -127283087 + L1MB3 LINE L1 5881 6003 -180 231 263 12 12 chr1 115381374 115381454 -127282899 - L1M4 LINE L1 -1692 4454 4375 633 228 74 0 chr1 115381610 115381759 -127282594 - L1MA9 LINE L1 -2 6310 6151 516 262 27 22 chr1 115382234 115382417 -127281936 - L1M4 LINE L1 -1977 4169 3986 29 28 0 0 chr1 115382432 115382468 -127281885 + AT_rich Low_complexity Low_complexity 1 36 0 2398 266 45 45 chr1 115383435 115384206 -127280147 + L1MDa LINE L1 1 771 -5769 3437 251 91 15 chr1 115384213 115385447 -127278906 + L1MDa LINE L1 817 2143 -4397 2350 227 11 2 chr1 115385547 115386094 -127278259 - L1 LINE L1 -1936 5272 4721 3546 237 33 15 chr1 115386096 115387124 -127277229 - L1 LINE L1 -2778 4430 3384 3740 150 43 1 chr1 115387145 115387837 -127276516 - L1MA2 LINE L1 0 6304 5584 9686 189 31 4 chr1 115387839 115389897 -127274456 - L1MA2 LINE L1 -813 5333 3220 288 247 0 14 chr1 115389899 115389972 -127274381 - L1MA2 LINE L1 -3538 2608 2537 * 8402 236 50 54 chr1 115389968 115390756 -127273597 - L1 LINE L1 -3819 3389 2599 2233 105 7 3 chr1 115390756 115391061 -127273292 - AluSp SINE Alu -5 308 3 8402 236 50 54 chr1 115391061 115391159 -127273194 - L1 LINE L1 -4609 2599 2502 1688 200 7 3 chr1 115391159 115391469 -127272884 + AluJb SINE Alu 1 311 -1 8402 236 50 54 chr1 115391469 115393164 -127271189 - L1 LINE L1 -4706 2502 802 360 0 0 0 chr1 115393164 115393204 -127271149 + (TC)n Simple_repeat Simple_repeat 2 41 0 * 567 78 0 0 chr1 115393203 115393280 -127271073 + (TA)n Simple_repeat Simple_repeat 2 78 0 8402 236 50 54 chr1 115393204 115394053 -127270300 - L1 LINE L1 -6406 802 1 33 56 0 0 chr1 115394961 115395015 -127269338 + AT_rich Low_complexity Low_complexity 1 54 0 209 330 167 50 chr1 115395883 115396104 -127268249 + L2 LINE L2 2991 3237 -35 368 261 103 43 chr1 115396289 115396473 -127267880 + MIR SINE MIR 39 233 -29 1505 179 32 0 chr1 115397085 115397393 -127266960 + MER33 DNA MER1_type 1 318 -6 1823 226 96 16 chr1 115397736 115398288 -127266065 + L1MC4 LINE L1 7076 7671 -371 1384 219 42 39 chr1 115398297 115398653 -127265700 + MLT1A1 LTR MaLR 1 357 -8 819 216 77 85 chr1 115398665 115399030 -127265323 + L1MC4 LINE L1 7680 8041 -1 21 0 0 0 chr1 115399835 115399856 -127264497 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 115399916 115399945 -127264408 + AT_rich Low_complexity Low_complexity 1 29 0 2490 228 66 34 chr1 115400684 115401483 -127262870 - L1MD1 LINE L1 -2 6634 5863 2616 113 8 0 chr1 115401483 115401855 -127262498 - THE1C LTR MaLR 0 375 1 2490 228 66 34 chr1 115401855 115402516 -127261837 - L1MD1 LINE L1 -773 5863 5085 507 30 0 0 chr1 115402516 115402582 -127261771 - L1PA6 LINE L1 0 6154 6089 2490 228 66 34 chr1 115402582 115402745 -127261608 - L1MD1 LINE L1 -1551 5085 4929 23 54 0 0 chr1 115402754 115402791 -127261562 + AT_rich Low_complexity Low_complexity 1 37 0 2154 218 86 68 chr1 115402791 115404168 -127260185 - L1MD1 LINE L1 -1755 4785 3144 2137 101 0 11 chr1 115404168 115404477 -127259876 - AluSq SINE Alu 0 313 3 2154 218 86 68 chr1 115404477 115405309 -127259044 - L1MD1 LINE L1 -3396 3144 2329 1140 229 23 7 chr1 115405529 115405835 -127258518 + L1 LINE L1 3412 3722 -2424 618 314 70 45 chr1 115405914 115406443 -127257910 - MLT1F LTR MaLR 0 542 1 335 283 106 50 chr1 115406573 115406771 -127257582 + MLT1H1 LTR MaLR 347 555 0 5427 184 31 20 chr1 115406777 115408883 -127255470 - L1MA4A LINE L1 -6 6297 4182 562 292 82 30 chr1 115409014 115409418 -127254935 + L1ME3A LINE L1 4497 4921 -1225 477 278 66 59 chr1 115409417 115409907 -127254446 + L1ME3A LINE L1 5644 6162 -8 * 1579 181 47 36 chr1 115410005 115410364 -127253989 - MLT1A2 LTR MaLR -11 363 1 341 189 24 71 chr1 115410384 115410511 -127253842 + L1MC5 LINE L1 7609 7729 -232 2212 117 3 0 chr1 115410815 115411115 -127253238 - AluSx SINE Alu -11 301 1 23 33 0 0 chr1 115411153 115411183 -127253170 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 115411440 115411463 -127252890 + AT_rich Low_complexity Low_complexity 1 23 0 203 291 0 0 chr1 115411532 115411587 -127252766 - MIR3 SINE MIR -24 184 130 336 266 57 28 chr1 115412325 115412502 -127251851 + L1MC5 LINE L1 7744 7925 -36 6185 87 32 0 chr1 115413043 115414534 -127249819 + L1PA7 LINE L1 4639 6151 -3 240 255 69 29 chr1 115414630 115414732 -127249621 + L1ME4a LINE L1 6013 6118 -3 2476 56 0 28 chr1 115415157 115415477 -127248876 - AluY SINE Alu 0 311 1 688 339 110 11 chr1 115415482 115415836 -127248517 + L2 LINE L2 2423 2811 -503 227 272 12 12 chr1 115416045 115416126 -127248227 + GA-rich Low_complexity Low_complexity 4 84 0 278 309 106 76 chr1 115416370 115416606 -127247747 + MIR SINE MIR 20 262 0 2202 198 46 27 chr1 115416726 115417262 -127247091 - MLT1E3 LTR MaLR 0 624 89 207 100 0 0 chr1 115418150 115418180 -127246173 + (A)n Simple_repeat Simple_repeat 1 30 0 2361 79 3 0 chr1 115418431 115418736 -127245617 - AluY SINE Alu -5 306 1 223 309 48 12 chr1 115418836 115418920 -127245433 + L2 LINE L2 3186 3272 0 374 333 58 0 chr1 115419721 115419895 -127244458 - L2 LINE L2 0 3313 3130 37 23 0 0 chr1 115421872 115421916 -127242437 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 115422445 115422474 -127241879 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 115423436 115423460 -127240893 + AT_rich Low_complexity Low_complexity 1 24 0 200 106 15 45 chr1 115423635 115423701 -127240652 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr1 115423946 115423976 -127240377 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr1 115423996 115424031 -127240322 + AT_rich Low_complexity Low_complexity 1 35 0 36 53 0 0 chr1 115424543 115424600 -127239753 + AT_rich Low_complexity Low_complexity 1 57 0 2235 102 3 16 chr1 115424734 115425047 -127239306 - AluSg SINE Alu -1 309 1 2479 125 62 0 chr1 115425527 115425928 -127238425 + MSTA LTR MaLR 3 428 0 481 210 183 46 chr1 115426775 115427037 -127237316 + LTR50 LTR ERVL 498 795 0 225 93 56 0 chr1 115427179 115427233 -127237120 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 327 314 39 33 chr1 115427249 115427402 -127236951 - L1ME4a LINE L1 -251 5870 5717 181 327 115 0 chr1 115428753 115428805 -127235548 + L2 LINE L2 1850 1907 -1407 227 392 75 4 chr1 115428886 115429141 -127235212 + L2 LINE L2 2044 2316 -998 340 309 146 24 chr1 115430593 115430758 -127233595 - MIR3 SINE MIR -20 188 4 33 43 0 0 chr1 115430839 115430886 -127233467 + AT_rich Low_complexity Low_complexity 1 47 0 337 316 98 46 chr1 115431238 115431412 -127232941 - MIR SINE MIR -70 192 10 330 98 0 0 chr1 115433599 115433650 -127230703 + (TC)n Simple_repeat Simple_repeat 2 52 0 835 177 7 0 chr1 115433836 115433977 -127230376 - Tigger3(Golem) DNA MER2_type 0 3038 2897 2053 145 0 7 chr1 115434438 115434735 -127229618 + AluSx SINE Alu 1 295 -17 318 50 0 0 chr1 115435305 115435345 -127229008 + (A)n Simple_repeat Simple_repeat 1 40 0 633 212 39 108 chr1 115435833 115436064 -127228289 - MER58C DNA MER1_type 0 215 1 222 217 22 0 chr1 115436464 115436510 -127227843 + CT-rich Low_complexity Low_complexity 2 48 0 412 262 156 38 chr1 115437018 115437255 -127227098 - HAL1 LINE L1 -679 1828 1564 3425 149 27 27 chr1 115437255 115437911 -127226442 + L1MA4A LINE L1 5323 5978 -325 228 91 0 0 chr1 115438018 115438051 -127226302 + THE1A LTR MaLR 323 355 0 8792 105 5 2 chr1 115438051 115439245 -127225108 + THE1A-int LTR MaLR 1 1197 -383 2276 104 7 0 chr1 115439379 115439686 -127224667 + AluSx SINE Alu 3 311 -1 280 177 32 0 chr1 115439756 115439818 -127224535 + MIR SINE MIR 79 142 -120 1969 145 0 16 chr1 115440121 115440424 -127223929 + AluSx SINE Alu 1 298 -14 287 281 83 0 chr1 115440956 115441052 -127223301 - LTR16A1 LTR ERVL -141 316 213 300 214 82 82 chr1 115441415 115441574 -127222779 + L1M4 LINE L1 4905 5063 -1083 319 318 26 19 chr1 115443847 115444001 -127220352 - L3b LINE CR1 -314 1269 1115 256 111 22 0 chr1 115444517 115444562 -127219791 - MADE1 DNA Mariner -34 46 1 200 35 35 0 chr1 115445510 115445539 -127218814 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1709 190 38 6 chr1 115446141 115446483 -127217870 + MLT1A1 LTR MaLR 1 353 -12 243 235 222 0 chr1 115446734 115446815 -127217538 + LTR16B LTR ERVL 193 291 -173 248 246 210 9 chr1 115447881 115448105 -127216248 + HAL1 LINE L1 2134 2402 -105 1065 165 116 60 chr1 115448823 115449108 -127215245 - LTR2B LTR ERV1 -158 332 32 449 110 33 55 chr1 115449466 115449557 -127214796 - L1MB4 LINE L1 -1 6179 6091 3838 128 50 5 chr1 115449559 115450205 -127214148 - L1PA13 LINE L1 -3 6160 5486 462 332 78 26 chr1 115450313 115450584 -127213769 + L1MCa LINE L1 1297 1581 -4845 26 30 0 0 chr1 115451184 115451217 -127213136 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr1 115451379 115451415 -127212938 + AT_rich Low_complexity Low_complexity 1 36 0 430 307 188 0 chr1 115451425 115451601 -127212752 + MIR SINE MIR 54 262 0 603 309 117 22 chr1 115452044 115452455 -127211898 - L2 LINE L2 -8 3305 2856 21 36 0 0 chr1 115453750 115453778 -127210575 + AT_rich Low_complexity Low_complexity 1 28 0 1930 144 16 19 chr1 115453824 115454137 -127210216 + AluJb SINE Alu 1 312 0 1938 175 24 9 chr1 115456276 115456614 -127207739 - MER2 DNA MER2_type 0 344 2 1256 243 102 72 chr1 115457414 115457637 -127206716 + MLT1E LTR MaLR 1 216 -377 1715 208 25 14 chr1 115457637 115457998 -127206355 + MLT1A1 LTR MaLR 1 365 0 1256 243 102 72 chr1 115457998 115458337 -127206016 + MLT1E LTR MaLR 216 593 0 983 299 145 34 chr1 115459009 115459797 -127204556 + L2 LINE L2 2013 2887 -427 3646 157 15 21 chr1 115459823 115460485 -127203868 - L1MC1 LINE L1 -17 6316 5659 1630 128 0 0 chr1 115460586 115460828 -127203525 - AluSq SINE Alu -71 242 1 180 239 0 0 chr1 115462521 115462567 -127201786 + MIR SINE MIR 107 152 -110 313 284 78 0 chr1 115462650 115462752 -127201601 - MLT1J2 LTR MaLR 0 450 341 786 199 0 0 chr1 115464901 115465062 -127199291 + L1MB2 LINE L1 6008 6168 -3 287 294 37 59 chr1 115467529 115467665 -127196688 - L3 LINE CR1 -677 900 768 185 277 90 66 chr1 115468059 115468315 -127196038 + L2 LINE L2 1520 1781 -1533 3973 210 2 18 chr1 115468993 115469472 -127194881 + L1PA15-16 LINE L1 2067 2527 -4322 2351 70 0 13 chr1 115469472 115469774 -127194579 - AluSg SINE Alu -12 298 1 3973 210 2 18 chr1 115469774 115470215 -127194138 + L1PA15-16 LINE L1 2527 2973 -3876 180 0 0 0 chr1 115470576 115470596 -127193757 + (TTG)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr1 115471566 115471592 -127192761 + AT_rich Low_complexity Low_complexity 1 26 0 503 141 13 0 chr1 115471950 115472028 -127192325 + MADE1 DNA Mariner 1 79 -1 186 103 0 0 chr1 115472241 115472270 -127192083 + (CA)n Simple_repeat Simple_repeat 2 30 0 191 309 228 0 chr1 115475131 115475267 -127189086 + L2 LINE L2 3028 3194 -78 566 108 0 0 chr1 115475372 115475588 -127188765 + AluSp/q SINE Alu 209 424 0 578 258 48 30 chr1 115476591 115476758 -127187595 - MIR SINE MIR -57 205 36 656 269 43 55 chr1 115477706 115477962 -127186391 - HAL1 LINE L1 -756 1751 1499 412 281 55 7 chr1 115478660 115478806 -127185547 - HAL1 LINE L1 -1260 1247 1095 557 288 40 36 chr1 115479106 115479380 -127184973 - ERVL LTR ERVL -2049 3715 3441 337 331 67 47 chr1 115479364 115479618 -127184735 - ERVL LTR ERVL -3369 2395 2137 * 3720 111 16 52 chr1 115480136 115480635 -127183718 - MER4A LTR ERV1 0 600 126 2125 85 10 26 chr1 115480635 115480940 -127183413 + AluSp SINE Alu 1 300 -13 3720 111 16 52 chr1 115480940 115481060 -127183293 - MER4A LTR ERV1 -474 126 3 2253 200 39 2 chr1 115481671 115482156 -127182197 - L1MB5 LINE L1 -8 6166 5664 369 283 158 53 chr1 115484047 115484407 -127179946 + L2 LINE L2 1755 2152 -1162 23 0 0 0 chr1 115485212 115485235 -127179118 + AT_rich Low_complexity Low_complexity 1 23 0 1787 151 0 3 chr1 115485259 115485551 -127178802 - AluJb SINE Alu -20 292 2 1812 223 53 7 chr1 115485565 115486001 -127178352 - MER90 LTR ERV1 -5 609 154 639 325 36 72 chr1 115486102 115486234 -127178119 + L2 LINE L2 2871 3006 -266 1798 122 26 36 chr1 115486234 115486538 -127177815 - AluSg SINE Alu -3 307 7 639 325 36 72 chr1 115486538 115486820 -127177533 + L2 LINE L2 3006 3270 -2 358 323 0 8 chr1 115486835 115486965 -127177388 - LTR67 LTR ERVL 0 557 429 2054 161 44 37 chr1 115487516 115488049 -127176304 + MLT2A2 LTR ERVL 16 554 0 458 286 48 29 chr1 115488119 115488325 -127176028 + LTR16C LTR ERVL 281 490 -1 1046 213 127 65 chr1 115488541 115488817 -127175536 - MLT1C LTR MaLR -53 414 106 2062 108 3 3 chr1 115488817 115489113 -127175240 - AluSx SINE Alu -16 296 1 1046 213 127 65 chr1 115489113 115489221 -127175132 - MLT1C LTR MaLR -361 106 6 332 305 69 73 chr1 115490867 115491100 -127173253 + L2 LINE L2 2839 3070 -202 246 32 0 0 chr1 115491390 115491421 -127172932 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1010 53 0 15 chr1 115491520 115491652 -127172701 + L1PA4 LINE L1 6023 6152 -3 241 200 141 59 chr1 115491793 115491878 -127172475 - MIR3 SINE MIR -54 154 63 1923 160 0 6 chr1 115493739 115494052 -127170301 + AluJo SINE Alu 1 311 -1 210 216 0 0 chr1 115494296 115494333 -127170020 + polypurine Low_complexity Low_complexity 2 38 0 221 116 0 23 chr1 115496872 115496915 -127167438 + (AATAG)n Simple_repeat Simple_repeat 2 43 0 570 179 168 47 chr1 115497596 115497786 -127166567 - MIR SINE MIR -29 233 21 267 200 20 0 chr1 115497831 115497881 -127166472 - MIR SINE MIR -112 150 100 472 259 29 14 chr1 115498537 115498676 -127165677 - MLT1I LTR MaLR -16 393 253 355 270 6 28 chr1 115499096 115499259 -127165094 - MIR SINE MIR -46 216 3 353 317 22 58 chr1 115500306 115500530 -127163823 + L2 LINE L2 2967 3182 -131 594 281 125 27 chr1 115500549 115500879 -127163474 - MLT1J2 LTR MaLR -24 422 51 838 235 22 71 chr1 115500989 115501313 -127163040 - MLT1D LTR MaLR -193 312 5 217 277 0 0 chr1 115501316 115501363 -127162990 - MIR SINE MIR -167 95 49 533 340 165 47 chr1 115501705 115502452 -127161901 - L3 LINE CR1 -282 1295 461 414 336 8 0 chr1 115503614 115503745 -127160608 - MIR SINE MIR -118 144 13 197 315 45 34 chr1 115504425 115504514 -127159839 - L2 LINE L2 -1 3312 3223 737 164 74 17 chr1 115504561 115504736 -127159617 - MER96B DNA MER1_type? -1 410 116 1140 71 13 0 chr1 115505386 115505540 -127158813 + THE1A-int LTR MaLR 1425 1580 0 2588 88 3 22 chr1 115505540 115505902 -127158451 + THE1A LTR MaLR 1 355 0 1423 310 63 44 chr1 115505929 115506748 -127157605 - ERVL LTR ERVL -292 5472 4638 507 317 77 6 chr1 115507830 115508244 -127156109 - LTR16A LTR ERVL 0 450 1 556 148 0 74 chr1 115508352 115508474 -127155879 - L1MB3 LINE L1 -57 6126 6014 6243 166 14 2 chr1 115508577 115509801 -127154552 + L1P LINE L1 2879 4117 -2029 5911 172 11 2 chr1 115509802 115510994 -127153359 + L1P LINE L1 4201 5403 -743 1387 148 0 0 chr1 115510999 115511216 -127153137 - MSTA LTR MaLR 0 428 212 1645 147 15 87 chr1 115511346 115511680 -127152673 + AluJb SINE Alu 1 310 -2 200 321 52 52 chr1 115511873 115512007 -127152346 + MIR3 SINE MIR 74 207 -1 193 318 0 0 chr1 115513191 115513254 -127151099 - MIR3 SINE MIR -1 207 145 332 331 75 31 chr1 115518376 115518536 -127145817 + MIR SINE MIR 25 191 -71 751 197 7 0 chr1 115519401 115519538 -127144815 - AluSg/x SINE Alu -38 272 135 2088 146 0 7 chr1 115521627 115521935 -127142418 - AluSc SINE Alu -3 306 1 1900 153 0 17 chr1 115522996 115523291 -127141062 - AluSx SINE Alu -22 290 1 1841 206 91 7 chr1 115523291 115523742 -127140611 - MLT1H LTR MaLR -57 492 4 21 0 0 0 chr1 115526154 115526175 -127138178 + AT_rich Low_complexity Low_complexity 1 21 0 595 264 55 33 chr1 115527257 115527530 -127136823 - LTR16C LTR ERVL -8 483 205 350 306 113 0 chr1 115529350 115529474 -127134879 - MIR SINE MIR -122 140 3 841 239 60 3 chr1 115529490 115529800 -127134553 + MER33 DNA MER1_type 1 324 0 491 182 0 40 chr1 115530637 115530658 -127133695 + Tigger7 DNA MER2_type 2391 2411 -80 1850 139 54 18 chr1 115530658 115530989 -127133364 - MER2 DNA MER2_type -1 343 1 491 182 0 40 chr1 115530989 115531066 -127133287 + Tigger7 DNA MER2_type 2411 2485 -6 421 268 137 11 chr1 115531880 115532063 -127132290 + MIR SINE MIR 57 262 0 289 331 98 25 chr1 115534458 115534621 -127129732 + MIR3 SINE MIR 32 206 -2 2084 129 3 7 chr1 115534637 115534947 -127129406 + AluSq SINE Alu 1 309 -4 21 0 0 0 chr1 115535075 115535096 -127129257 + AT_rich Low_complexity Low_complexity 1 21 0 407 291 114 43 chr1 115535113 115535323 -127129030 - MIR SINE MIR -26 236 12 24 32 0 0 chr1 115535364 115535395 -127128958 + AT_rich Low_complexity Low_complexity 1 31 0 497 235 87 52 chr1 115535734 115536023 -127128330 + L1M4 LINE L1 2256 2554 -3592 450 304 208 15 chr1 115536205 115536600 -127127753 - L1MC/D LINE L1 -2074 5734 5264 1159 207 127 4 chr1 115536746 115537021 -127127332 - MER7A DNA MER2_type 0 346 40 1074 184 111 0 chr1 115537091 115537335 -127127018 + MER2 DNA MER2_type 4 274 -71 897 174 0 0 chr1 115537426 115537570 -127126783 - FRAM SINE Alu -13 163 20 317 210 0 25 chr1 115537838 115537919 -127126434 - MLT1I LTR MaLR 0 409 331 265 235 59 0 chr1 115538015 115538100 -127126253 - MLT1I LTR MaLR -250 159 70 273 201 131 4 chr1 115539296 115539442 -127124911 + MER34C LTR ERV1 11 165 -377 2266 109 0 6 chr1 115540185 115540496 -127123857 + AluY SINE Alu 3 311 0 353 271 68 15 chr1 115540986 115541119 -127123234 - L1M3c LINE L1 -4756 1385 1246 1420 276 12 25 chr1 115541240 115541798 -127122555 - LTR25-int LTR ERV1 -5819 1177 627 237 193 18 18 chr1 115541845 115541902 -127122451 - MER4A LTR ERV1 -351 313 257 * 301 198 88 11 chr1 115541898 115541989 -127122364 - MER4A LTR ERV1 -566 98 1 1573 144 10 10 chr1 115542003 115542302 -127122051 + L1M1 LINE L1 5254 5552 -753 1266 300 141 51 chr1 115542411 115543430 -127120923 - L2 LINE L2 -1520 1794 684 820 230 15 23 chr1 115543838 115544099 -127120254 - LTR25-int LTR ERV1 -6089 907 649 274 158 18 18 chr1 115544170 115544227 -127120126 - MER4A LTR ERV1 -351 313 257 * 313 176 88 11 chr1 115544223 115544314 -127120039 - MER4A LTR ERV1 -566 98 1 5515 139 22 2 chr1 115544328 115545307 -127119046 + L1MA3 LINE L1 5254 6252 -53 1263 223 3 35 chr1 115545793 115546075 -127118278 - AluJo SINE Alu -39 273 1 455 282 171 19 chr1 115546111 115546327 -127118026 + MIR SINE MIR 6 254 -8 608 176 66 0 chr1 115546708 115546844 -127117509 + L1MA4A LINE L1 6156 6300 -3 278 176 29 0 chr1 115547453 115547521 -127116832 - L1MA9 LINE L1 -2 6374 6305 1163 272 35 14 chr1 115547714 115548141 -127116212 - L1ME3 LINE L1 0 6162 5727 975 169 6 0 chr1 115548329 115548501 -127115852 - L1PA16 LINE L1 0 6166 5994 894 179 36 0 chr1 115548508 115548703 -127115650 - L1MA9 LINE L1 -84 6292 6091 2503 204 42 50 chr1 115548715 115548838 -127115515 - L1MA9 LINE L1 -401 5975 5852 294 73 0 0 chr1 115548838 115548879 -127115474 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 2503 204 42 50 chr1 115548879 115549050 -127115303 - L1MA9 LINE L1 -524 5852 5681 1912 130 24 7 chr1 115549050 115549342 -127115011 - AluSx SINE Alu -12 300 4 2503 204 42 50 chr1 115549342 115550100 -127114253 - L1MA9 LINE L1 -695 5681 4935 976 198 20 16 chr1 115550109 115550356 -127113997 - L1MA9 LINE L1 -1422 4788 4541 * 2527 248 51 37 chr1 115550329 115551907 -127112446 - L1MA9 LINE L1 -2970 3240 1637 519 220 14 0 chr1 115551885 115552028 -127112325 - L1M3c LINE L1 -4944 1190 1053 * 575 229 55 5 chr1 115552029 115552247 -127112106 + L1M3c LINE L1 1158 1386 -4755 1126 199 177 3 chr1 115554410 115554721 -127109632 - MLT1A1 LTR MaLR 0 365 1 180 0 0 0 chr1 115555210 115555230 -127109123 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1797 118 14 11 chr1 115556027 115556306 -127108047 + AluSp SINE Alu 1 280 -33 290 149 0 60 chr1 115556253 115556320 -127108033 + AluSp/q SINE Alu 230 292 -11 24 53 0 0 chr1 115557136 115557174 -127107179 + AT_rich Low_complexity Low_complexity 1 38 0 6645 121 14 1 chr1 115557496 115558535 -127105818 - L1MA3 LINE L1 0 6305 5254 460 156 89 0 chr1 115558549 115558639 -127105714 + MER4A LTR ERV1 1 98 -566 300 140 18 18 chr1 115558635 115558692 -127105661 + MER4A LTR ERV1 257 313 -351 * 3012 263 45 36 chr1 115558763 115559818 -127104535 + Harlequin LTR ERV1 649 1713 -5283 2970 220 34 3 chr1 115559878 115560504 -127103849 + Harlequin LTR ERV1 2147 2791 -6128 5600 203 66 58 chr1 115560507 115562285 -127102068 + Harlequin LTR ERV1 609 2332 -2885 21 36 0 0 chr1 115563144 115563172 -127101181 + AT_rich Low_complexity Low_complexity 1 28 0 1352 204 4 36 chr1 115564523 115564803 -127099550 - AluJo SINE Alu -41 271 1 468 282 171 19 chr1 115564838 115565054 -127099299 + MIR SINE MIR 6 254 -8 400 338 153 39 chr1 115565121 115565532 -127098821 + L3 LINE CR1 1057 1514 -63 191 287 64 32 chr1 115565833 115565927 -127098426 - MIR SINE MIR -11 251 155 25 0 0 0 chr1 115565973 115565998 -127098355 + AT_rich Low_complexity Low_complexity 1 25 0 264 130 0 0 chr1 115566705 115566751 -127097602 + (CA)n Simple_repeat Simple_repeat 2 47 0 708 191 8 0 chr1 115567629 115567755 -127096598 - FLAM_C SINE Alu -6 127 1 210 71 0 0 chr1 115570797 115570825 -127093528 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3021 100 91 0 chr1 115571391 115571840 -127092513 + LTR2B LTR ERV1 1 490 0 2043 114 26 49 chr1 115571840 115572190 -127092163 + Harlequin LTR ERV1 1 342 -6554 * 8740 263 22 5 chr1 115572187 115574247 -127090106 + Harlequin LTR ERV1 766 2859 -4954 3533 200 8 3 chr1 115574240 115574864 -127089489 + Harlequin LTR ERV1 2961 3587 -4226 * 15547 249 12 12 chr1 115574874 115578395 -127085958 + Harlequin LTR ERV1 3841 7359 -454 1979 174 21 21 chr1 115578386 115578766 -127085587 + Harlequin LTR ERV1 6517 6896 0 * 3210 115 45 0 chr1 115578766 115579235 -127085118 + LTR2B LTR ERV1 1 490 0 244 284 145 12 chr1 115579471 115579728 -127084625 - L1ME LINE L1 -390 5731 5406 2115 114 0 10 chr1 115579728 115580035 -127084318 + AluY SINE Alu 1 304 -7 244 284 145 12 chr1 115580035 115580135 -127084218 - L1ME LINE L1 -715 5406 5321 997 241 129 4 chr1 115580342 115580620 -127083733 - MER7A DNA MER2_type 0 346 36 827 187 137 0 chr1 115580686 115580868 -127083485 + MER2 DNA MER2_type 4 210 -135 22 56 0 0 chr1 115581099 115581135 -127083218 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 115581394 115581429 -127082924 + AT_rich Low_complexity Low_complexity 1 35 0 1596 167 4 11 chr1 115581459 115581729 -127082624 - AluSx SINE Alu -44 268 1 309 26 0 0 chr1 115581900 115581938 -127082415 + (TG)n Simple_repeat Simple_repeat 1 38 0 1991 288 157 44 chr1 115582284 115583634 -127080719 + L2 LINE L2 677 2178 -1136 24 0 0 0 chr1 115584101 115584125 -127080228 + AT_rich Low_complexity Low_complexity 1 24 0 220 380 29 29 chr1 115584823 115584955 -127079398 - MER5B DNA MER1_type -10 179 37 436 297 47 16 chr1 115584955 115585083 -127079270 + MER5B DNA MER1_type 3 134 -44 835 178 0 34 chr1 115585084 115585230 -127079123 - AluJb SINE Alu -24 288 148 3237 162 33 26 chr1 115585233 115585894 -127078459 + L1MA4A LINE L1 5634 6299 -4 230 269 39 19 chr1 115586309 115586413 -127077940 - HAL1 LINE L1 -1004 1503 1398 338 178 0 0 chr1 115586515 115586588 -127077765 - L1MA9 LINE L1 -2 6198 6126 1257 261 50 14 chr1 115586777 115587198 -127077155 - L1ME3 LINE L1 0 6162 5727 1024 156 6 6 chr1 115587385 115587565 -127076788 - L1PA16 LINE L1 0 6166 5987 672 217 65 0 chr1 115587570 115587754 -127076599 - L1MA9 LINE L1 -90 6110 5915 2506 222 51 40 chr1 115587766 115587885 -127076468 - L1MA9 LINE L1 -401 5799 5683 401 0 20 0 chr1 115587885 115587934 -127076419 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2506 222 51 40 chr1 115587934 115588096 -127076257 - L1MA9 LINE L1 -517 5683 5524 1552 142 0 9 chr1 115588096 115588329 -127076024 - AluSq SINE Alu -78 235 5 2506 222 51 40 chr1 115588329 115588775 -127075578 - L1MA9 LINE L1 -676 5524 5084 243 0 0 0 chr1 115588775 115588802 -127075551 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 2506 222 51 40 chr1 115588802 115589499 -127074854 - L1MA9 LINE L1 -1116 5084 4365 * 2831 244 56 40 chr1 115589472 115591009 -127073344 - L1MA9 LINE L1 -2970 3064 1494 247 192 15 0 chr1 115591030 115591099 -127073254 - L1M3c LINE L1 -4947 1008 934 634 213 50 18 chr1 115591115 115591336 -127073017 + L1M3c LINE L1 982 1209 -4756 2074 118 3 16 chr1 115591822 115592126 -127072227 - AluY SINE Alu -11 300 1 31 44 0 0 chr1 115592692 115592737 -127071616 + AT_rich Low_complexity Low_complexity 1 45 0 893 214 59 0 chr1 115593827 115594014 -127070339 - MLT1A1 LTR MaLR -2 363 166 230 208 19 0 chr1 115594076 115594129 -127070224 - MLT1A1 LTR MaLR -336 54 1 230 136 23 0 chr1 115594235 115594279 -127070074 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 210 37 0 0 chr1 115594651 115594678 -127069675 + (TTG)n Simple_repeat Simple_repeat 1 27 0 677 145 0 3 chr1 115595486 115595707 -127068646 + AluSp SINE Alu 1 296 -17 23 0 0 0 chr1 115596101 115596124 -127068229 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chr1 115596150 115596197 -127068156 + AT_rich Low_complexity Low_complexity 1 47 0 875 133 48 6 chr1 115596866 115597031 -127067322 - L1MA3 LINE L1 0 6305 6134 28 29 0 0 chr1 115597824 115597859 -127066494 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 115597901 115597937 -127066416 + AT_rich Low_complexity Low_complexity 1 36 0 1590 280 14 7 chr1 115598874 115599654 -127064699 + Harlequin LTR ERV1 890 1712 -5284 3140 214 32 3 chr1 115599706 115600333 -127064020 + Harlequin LTR ERV1 2147 2791 -6128 5679 202 67 58 chr1 115600336 115602113 -127062240 + Harlequin LTR ERV1 609 2332 -2885 21 36 0 0 chr1 115602972 115603000 -127061353 + AT_rich Low_complexity Low_complexity 1 28 0 1358 204 4 32 chr1 115604351 115604630 -127059723 - AluJo SINE Alu -41 271 1 468 282 171 19 chr1 115604665 115604881 -127059472 + MIR SINE MIR 6 254 -8 400 338 153 39 chr1 115604949 115605360 -127058993 + L3 LINE CR1 1057 1514 -63 191 287 64 32 chr1 115605661 115605755 -127058598 - MIR SINE MIR -11 251 155 25 0 0 0 chr1 115605801 115605826 -127058527 + AT_rich Low_complexity Low_complexity 1 25 0 264 130 0 0 chr1 115606534 115606580 -127057773 + (CA)n Simple_repeat Simple_repeat 2 47 0 708 191 8 0 chr1 115607458 115607584 -127056769 - FLAM_C SINE Alu -6 127 1 210 71 0 0 chr1 115610625 115610653 -127053700 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3021 100 91 0 chr1 115611219 115611668 -127052685 + LTR2B LTR ERV1 1 490 0 2043 114 26 49 chr1 115611668 115612018 -127052335 + Harlequin LTR ERV1 1 342 -6554 * 8740 263 22 5 chr1 115612015 115614075 -127050278 + Harlequin LTR ERV1 766 2859 -4954 3533 200 8 3 chr1 115614068 115614692 -127049661 + Harlequin LTR ERV1 2961 3587 -4226 * 15523 250 12 11 chr1 115614702 115618220 -127046133 + Harlequin LTR ERV1 3841 7359 -454 1979 174 21 21 chr1 115618211 115618591 -127045762 + Harlequin LTR ERV1 6517 6896 0 * 3210 115 45 0 chr1 115618591 115619060 -127045293 + LTR2B LTR ERV1 1 490 0 244 284 145 12 chr1 115619296 115619553 -127044800 - L1ME LINE L1 -390 5731 5406 2103 117 0 10 chr1 115619553 115619860 -127044493 + AluY SINE Alu 1 304 -7 244 284 145 12 chr1 115619860 115619960 -127044393 - L1ME LINE L1 -715 5406 5321 997 241 129 4 chr1 115620167 115620445 -127043908 - MER7A DNA MER2_type 0 346 36 827 187 137 0 chr1 115620511 115620693 -127043660 + MER2 DNA MER2_type 4 210 -135 22 56 0 0 chr1 115620924 115620960 -127043393 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 115621219 115621254 -127043099 + AT_rich Low_complexity Low_complexity 1 35 0 1596 167 4 11 chr1 115621284 115621554 -127042799 - AluSx SINE Alu -44 268 1 327 25 0 0 chr1 115621725 115621765 -127042588 + (TG)n Simple_repeat Simple_repeat 1 40 0 1991 288 157 44 chr1 115622111 115623461 -127040892 + L2 LINE L2 677 2178 -1136 24 0 0 0 chr1 115623928 115623952 -127040401 + AT_rich Low_complexity Low_complexity 1 24 0 220 380 29 29 chr1 115624650 115624782 -127039571 - MER5B DNA MER1_type -10 179 37 436 297 47 16 chr1 115624782 115624910 -127039443 + MER5B DNA MER1_type 3 134 -44 835 178 0 34 chr1 115624911 115625057 -127039296 - AluJb SINE Alu -24 288 148 3237 162 33 26 chr1 115625060 115625721 -127038632 + L1MA4A LINE L1 5634 6299 -4 230 269 39 19 chr1 115626136 115626240 -127038113 - HAL1 LINE L1 -1004 1503 1398 338 178 0 0 chr1 115626342 115626415 -127037938 - L1MA9 LINE L1 -2 6310 6238 1257 261 50 14 chr1 115626604 115627025 -127037328 - L1ME3 LINE L1 0 6162 5727 1024 156 6 6 chr1 115627212 115627392 -127036961 - L1PA16 LINE L1 0 6166 5987 672 217 65 0 chr1 115627397 115627581 -127036772 - L1MA9 LINE L1 -90 6222 6027 1331 139 54 131 chr1 115627593 115627712 -127036641 - L1MA9 LINE L1 -401 5911 5784 437 0 19 0 chr1 115627712 115627765 -127036588 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1331 139 54 131 chr1 115627765 115627927 -127036426 - L1MA9 LINE L1 -528 5784 5663 1552 142 0 9 chr1 115627927 115628160 -127036193 - AluSq SINE Alu -78 235 5 1331 139 54 131 chr1 115628160 115628250 -127036103 - L1MA9 LINE L1 -649 5663 5568 286 126 126 92 chr1 115628840 115628927 -127035426 - L1MA9 LINE L1 -730 5570 5481 724 171 0 0 chr1 115629253 115629394 -127034959 + FLAM_C SINE Alu 3 143 0 34 24 0 0 chr1 115630017 115630058 -127034295 + AT_rich Low_complexity Low_complexity 1 41 0 287 111 0 19 chr1 115630267 115630321 -127034032 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 57 0 0 chr1 115630867 115630902 -127033451 + AT_rich Low_complexity Low_complexity 1 35 0 292 307 30 0 chr1 115631111 115631212 -127033141 + MIR SINE MIR 154 257 -5 369 353 152 23 chr1 115631505 115631814 -127032539 - L3 LINE CR1 -63 1514 1166 380 288 181 6 chr1 115631978 115632155 -127032198 - MIR SINE MIR -8 254 47 1500 194 4 11 chr1 115632228 115632501 -127031852 + AluJo SINE Alu 1 271 -41 1761 115 8 15 chr1 115633612 115633873 -127030480 - AluSx SINE Alu -53 259 1 309 109 0 0 chr1 115634045 115634091 -127030262 + (TG)n Simple_repeat Simple_repeat 1 46 0 382 289 94 13 chr1 115634446 115634595 -127029758 + L2 LINE L2 671 831 -2483 248 81 48 16 chr1 115634605 115634667 -127029686 + (CTATA)n Simple_repeat Simple_repeat 4 67 0 1781 282 182 12 chr1 115634693 115635552 -127028801 + L2 LINE L2 841 1845 -1469 39 22 0 0 chr1 115635909 115635955 -127028398 + AT_rich Low_complexity Low_complexity 1 46 0 298 344 44 31 chr1 115636609 115636748 -127027605 - MER5A DNA MER1_type 0 189 49 491 255 31 115 chr1 115636748 115636877 -127027476 + MER5B DNA MER1_type 3 112 -66 1864 163 0 14 chr1 115636877 115637166 -127027187 - AluJb SINE Alu -23 289 5 491 255 31 115 chr1 115637166 115637228 -127027125 + MER5B DNA MER1_type 112 178 0 2051 114 0 20 chr1 115638626 115638925 -127025428 - AluSc SINE Alu -16 293 1 283 345 0 0 chr1 115639030 115639114 -127025239 + MER5A DNA MER1_type 1 84 -105 384 281 0 0 chr1 115639117 115639213 -127025140 - MER81 DNA DNA -1 113 18 369 246 40 71 chr1 115639219 115639345 -127025008 + MER5A DNA MER1_type 68 189 0 1451 145 33 33 chr1 115640738 115641041 -127023312 - AluY SINE Alu -7 304 2 306 185 22 11 chr1 115641240 115641332 -127023021 + (TA)n Simple_repeat Simple_repeat 1 93 0 2289 134 8 27 chr1 115641332 115641704 -127022649 - THE1C LTR MaLR -7 368 4 224 194 0 0 chr1 115641704 115641740 -127022613 + (CA)n Simple_repeat Simple_repeat 1 36 0 265 230 40 0 chr1 115641745 115641819 -127022534 + L1MC4 LINE L1 6617 6693 -1349 339 44 0 0 chr1 115641860 115641905 -127022448 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr1 115644818 115644840 -127019513 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr1 115646574 115646597 -127017756 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 36 23 0 0 chr1 115647219 115647262 -127017091 + AT_rich Low_complexity Low_complexity 1 43 0 272 229 12 0 chr1 115647472 115647555 -127016798 + (TATATG)n Simple_repeat Simple_repeat 2 85 0 299 297 30 0 chr1 115648312 115648413 -127015940 + MIR SINE MIR 154 257 -5 322 370 159 19 chr1 115648704 115649012 -127015341 - L3 LINE CR1 -61 1516 1166 430 296 168 10 chr1 115649176 115649372 -127014981 - MIR SINE MIR -8 254 28 1484 198 4 11 chr1 115649425 115649698 -127014655 + AluJo SINE Alu 1 271 -41 186 71 0 0 chr1 115651053 115651081 -127013272 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr1 115651288 115651313 -127013040 + AT_rich Low_complexity Low_complexity 1 25 0 872 46 0 0 chr1 115651320 115651429 -127012924 + L1PA3 LINE L1 5989 6097 -58 25 0 0 0 chr1 115651962 115651987 -127012366 + AT_rich Low_complexity Low_complexity 1 25 0 2086 221 60 7 chr1 115652831 115653283 -127011070 - MER70B LTR ERVL -102 476 1 878 347 113 41 chr1 115653300 115654684 -127009669 + L2 LINE L2 1489 2972 -342 284 346 57 52 chr1 115655589 115655800 -127008553 + L2 LINE L2 2831 3042 -230 190 348 11 34 chr1 115655884 115655973 -127008380 + L2 LINE L2 3182 3268 -4 280 171 158 13 chr1 115657453 115657529 -127006824 + MIR SINE MIR 106 192 -70 1943 119 19 32 chr1 115657607 115657917 -127006436 + AluSx SINE Alu 1 306 -6 302 208 121 17 chr1 115659338 115659491 -127004862 + MER34 LTR ERV1 11 165 -377 7732 134 15 2 chr1 115660470 115661666 -127002687 - THE1B-int LTR MaLR -369 1211 1 1754 162 78 29 chr1 115661667 115662013 -127002340 - THE1B LTR MaLR -1 363 1 1192 154 0 59 chr1 115662015 115662235 -127002118 - MER61E LTR ERV1 -362 207 1 13165 176 47 39 chr1 115662241 115662803 -127001550 - MER61E-int LTR ERV1 -5 6991 6435 1754 153 68 40 chr1 115662803 115663155 -127001198 + THE1B LTR MaLR 1 362 -2 13165 176 47 39 chr1 115663155 115666405 -126997948 - MER61E-int LTR ERV1 -561 6435 604 3140 218 32 3 chr1 115666401 115667031 -126997322 - HUERS-P3 LTR ERV1 -6127 2792 2145 * 1593 286 13 6 chr1 115667081 115667861 -126996492 - HUERS-P3 LTR ERV1 -5284 1712 890 22 56 0 0 chr1 115668942 115668978 -126995375 + AT_rich Low_complexity Low_complexity 1 36 0 3262 91 58 0 chr1 115670512 115670975 -126993378 + LTR2B LTR ERV1 1 490 0 278 302 153 26 chr1 115671200 115671476 -126992877 - L1MC/D LINE L1 -2058 5750 5400 1986 116 3 10 chr1 115671476 115671778 -126992575 + AluY SINE Alu 1 300 -11 278 302 153 26 chr1 115671778 115671925 -126992428 - L1MC/D LINE L1 -2408 5400 5273 1035 189 70 4 chr1 115672080 115672358 -126991995 - Tigger3(Golem) DNA MER2_type 0 3029 36 1160 176 111 0 chr1 115672424 115672668 -126991685 + MER2 DNA MER2_type 4 274 -71 669 226 0 8 chr1 115672793 115672926 -126991427 - FRAM SINE Alu -44 132 1 330 222 0 25 chr1 115673166 115673247 -126991106 - MLT1I LTR MaLR 0 409 331 233 263 40 0 chr1 115673343 115673419 -126990934 - MLT1I LTR MaLR -250 159 81 31 68 0 0 chr1 115673869 115673928 -126990425 + AT_rich Low_complexity Low_complexity 1 59 0 1659 159 7 14 chr1 115673928 115674205 -126990148 - AluSx SINE Alu -37 275 1 423 0 0 0 chr1 115674374 115674421 -126989932 + (TG)n Simple_repeat Simple_repeat 2 48 0 1846 278 169 56 chr1 115674770 115676110 -126988243 + L2 LINE L2 676 2166 -1148 22 56 0 0 chr1 115676502 115676538 -126987815 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr1 115676580 115676615 -126987738 + AT_rich Low_complexity Low_complexity 1 35 0 305 336 16 24 chr1 115677327 115677444 -126986909 - MER5B DNA MER1_type -26 152 37 435 289 47 16 chr1 115677444 115677572 -126986781 + MER5B DNA MER1_type 3 134 -44 750 206 0 27 chr1 115677573 115677719 -126986634 - AluJb SINE Alu -23 289 148 3263 177 34 11 chr1 115677722 115678373 -126985980 + L1MA4A LINE L1 5634 6299 -4 296 80 68 11 chr1 115678876 115678964 -126985389 + (TA)n Simple_repeat Simple_repeat 1 93 0 372 164 0 0 chr1 115679065 115679138 -126985215 - L1MA9 LINE L1 -2 7729 7657 1331 264 38 9 chr1 115679328 115679752 -126984601 - L1ME3 LINE L1 0 6162 5727 987 161 6 6 chr1 115679940 115680120 -126984233 - L1PA16 LINE L1 0 6166 5987 676 203 80 16 chr1 115680121 115680308 -126984045 - L1MA9 LINE L1 -86 7645 7447 2645 215 60 43 chr1 115680321 115680440 -126983913 - L1MA9 LINE L1 -401 7330 7214 287 49 24 0 chr1 115680440 115680481 -126983872 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 2645 215 60 43 chr1 115680481 115680644 -126983709 - L1MA9 LINE L1 -517 7214 7055 1724 161 3 7 chr1 115680644 115680930 -126983423 - AluSx SINE Alu -23 289 5 2645 215 60 43 chr1 115680930 115681379 -126982974 - L1MA9 LINE L1 -676 7055 6615 288 0 0 0 chr1 115681379 115681411 -126982942 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2645 215 60 43 chr1 115681411 115682065 -126982288 - L1MA9 LINE L1 -1116 6615 5920 2933 241 31 46 chr1 115682066 115683354 -126980999 - L1MA9 LINE L1 -2970 4595 3325 442 324 18 4 chr1 115683369 115683647 -126980706 - L1MA9 LINE L1 -4292 3273 2992 296 203 0 0 chr1 115683640 115683704 -126980649 - L1M3c LINE L1 -4958 2528 2465 * 544 232 49 27 chr1 115683720 115683944 -126980409 + L1M3c LINE L1 2513 2741 -4755 2201 105 0 13 chr1 115684432 115684745 -126979608 - AluY SINE Alu 0 311 3 22 70 0 0 chr1 115685316 115685359 -126978994 + AT_rich Low_complexity Low_complexity 1 43 0 1281 24 12 0 chr1 115685551 115685718 -126978635 - L1P LINE L1 -727 5428 5260 5536 28 1 1 chr1 115685718 115686367 -126977986 + L1PA3 LINE L1 5498 6152 -3 919 206 58 0 chr1 115687274 115687463 -126976890 - MLT1A1 LTR MaLR 0 365 166 282 228 51 13 chr1 115687499 115687578 -126976775 - MLT1A1 LTR MaLR -283 82 1 201 74 0 0 chr1 115687685 115687712 -126976641 + (TA)n Simple_repeat Simple_repeat 2 28 0 183 42 0 0 chr1 115688083 115688107 -126976246 + (TTG)n Simple_repeat Simple_repeat 1 24 0 642 154 0 3 chr1 115688913 115689134 -126975219 + AluSp SINE Alu 1 296 -17 23 0 0 0 chr1 115689528 115689551 -126974802 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chr1 115689577 115689624 -126974729 + AT_rich Low_complexity Low_complexity 1 47 0 6452 125 21 2 chr1 115690293 115691325 -126973028 - L1MA3 LINE L1 0 6305 5254 398 167 89 0 chr1 115691339 115691429 -126972924 + MER4A LTR ERV1 1 98 -566 294 158 18 18 chr1 115691425 115691482 -126972871 + MER4A LTR ERV1 257 313 -351 * 2515 275 13 11 chr1 115691530 115692576 -126971777 + MER61E-int LTR ERV1 627 1712 -5284 3140 218 32 3 chr1 115692626 115693256 -126971097 + MER61E-int LTR ERV1 2145 2792 -6127 * 12960 187 52 42 chr1 115693252 115696501 -126967852 + MER61E-int LTR ERV1 604 6436 -560 1754 153 68 40 chr1 115696501 115696853 -126967500 - THE1B LTR MaLR -2 362 1 12960 187 52 42 chr1 115696853 115697415 -126966938 + MER61E-int LTR ERV1 6436 6991 -5 1167 159 0 59 chr1 115697421 115697641 -126966712 + MER61E LTR ERV1 1 207 -362 1754 162 78 29 chr1 115697643 115697989 -126966364 + THE1B LTR MaLR 1 363 -1 7713 135 15 2 chr1 115697990 115699186 -126965167 + THE1B-int LTR MaLR 1 1211 -369 302 208 121 17 chr1 115700165 115700318 -126964035 - MER34 LTR ERV1 -377 165 11 1943 119 19 32 chr1 115701739 115702049 -126962304 - AluSx SINE Alu -6 306 1 280 171 158 13 chr1 115702127 115702203 -126962150 - MIR SINE MIR -70 192 106 190 348 11 34 chr1 115703683 115703772 -126960581 - L2 LINE L2 -4 3268 3182 288 346 57 52 chr1 115703856 115704067 -126960286 - L2 LINE L2 -230 3042 2831 316 360 121 46 chr1 115704972 115705602 -126958751 - L2 LINE L2 -342 2972 2296 368 361 39 70 chr1 115905702 115906032 -126758321 - L2 LINE L2 -50 3222 2903 373 190 0 0 chr1 115906185 115906264 -126758089 + MER116 DNA Mariner 1 79 -1 767 189 37 24 chr1 115907188 115907352 -126757001 - AluJo SINE Alu -23 289 124 464 296 61 0 chr1 115907543 115907675 -126756678 + MIR3 SINE MIR 32 171 -37 199 222 19 74 chr1 115907779 115907833 -126756520 + MER5A DNA MER1_type 138 188 -1 443 297 0 41 chr1 115908503 115908656 -126755697 + MIR SINE MIR 45 190 -51 186 103 0 0 chr1 115908756 115908785 -126755568 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 325 330 92 56 chr1 115909071 115909519 -126754834 - L2 LINE L2 -352 2962 2499 861 273 101 45 chr1 115909637 115910055 -126754298 - L2 LINE L2 -1 3312 2872 2017 139 0 10 chr1 115910064 115910403 -126753950 - AluSx SINE Alu 0 312 1 36 40 0 0 chr1 115910630 115910680 -126753673 + AT_rich Low_complexity Low_complexity 1 50 0 2020 126 21 0 chr1 115911387 115911672 -126752681 + AluSg SINE Alu 3 293 -17 21 36 0 0 chr1 115911811 115911839 -126752514 + AT_rich Low_complexity Low_complexity 1 28 0 694 104 0 0 chr1 115912576 115912715 -126751638 - AluSg/x SINE Alu 0 325 187 587 200 9 0 chr1 115913389 115913499 -126750854 - FLAM_C SINE Alu -32 111 1 285 314 34 8 chr1 115913590 115913708 -126750645 + MIR SINE MIR 31 151 -111 25 0 0 0 chr1 115913970 115913995 -126750358 + AT_rich Low_complexity Low_complexity 1 25 0 646 318 72 8 chr1 115914392 115914628 -126749725 + MLT1J LTR MaLR 177 427 -84 22 0 0 0 chr1 115914775 115914797 -126749556 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 115914858 115914882 -126749471 + AT_rich Low_complexity Low_complexity 1 24 0 315 331 57 32 chr1 115915312 115915469 -126748884 + MIR SINE MIR 23 183 -79 303 364 39 0 chr1 115915972 115916126 -126748227 - MIR SINE MIR -10 252 93 250 275 88 0 chr1 115916213 115916304 -126748049 + MIR3 SINE MIR 105 203 -5 221 276 138 23 chr1 115918707 115918794 -126745559 + MIR SINE MIR 41 137 -125 457 322 38 56 chr1 115918915 115919235 -126745118 + L2 LINE L2 2553 2866 -448 532 268 80 0 chr1 115919698 115919836 -126744517 - MIR SINE MIR 0 262 114 22 70 0 0 chr1 115920015 115920058 -126744295 + AT_rich Low_complexity Low_complexity 1 43 0 2849 155 47 21 chr1 115921007 115921542 -126742811 - MER44D DNA MER2_type -1 604 1 395 345 116 13 chr1 115921911 115922143 -126742210 - HERV16 LTR ERVL -3573 1423 1168 452 263 66 15 chr1 115922371 115922508 -126741845 - HERV16 LTR ERVL -4096 900 757 276 239 45 15 chr1 115922585 115922652 -126741701 - HERV16 LTR ERVL -5168 596 528 744 267 101 0 chr1 115922890 115923107 -126741246 - HERV16 LTR ERVL -4757 239 1 278 214 0 0 chr1 115923109 115923165 -126741188 - LTR16A LTR ERVL -2 448 393 389 248 35 18 chr1 115923175 115923288 -126741065 + LTR16A LTR ERVL 248 362 -88 290 261 80 87 chr1 115923335 115923370 -126740983 - LTR16A LTR ERVL -298 152 118 949 188 32 21 chr1 115923370 115923556 -126740797 - MER5A DNA MER1_type -1 188 1 290 261 80 87 chr1 115923556 115923658 -126740695 - LTR16A LTR ERVL -332 118 16 355 316 105 16 chr1 115923673 115923863 -126740490 + MIR SINE MIR 23 229 -33 * 370 355 125 32 chr1 115923840 115924474 -126739879 + L2 LINE L2 2397 3094 -178 190 279 0 0 chr1 115924662 115924705 -126739648 + MIR SINE MIR 220 262 0 23 54 0 0 chr1 115924898 115924935 -126739418 + AT_rich Low_complexity Low_complexity 1 37 0 660 243 0 14 chr1 115925544 115925692 -126738661 + MLT2F LTR ERVL 1 146 -517 906 52 15 15 chr1 115925720 115925854 -126738499 + (GAAA)n Simple_repeat Simple_repeat 2 135 0 5560 246 61 23 chr1 115925855 115926395 -126737958 + ERVL LTR ERVL 3332 3850 -1914 1826 181 3 0 chr1 115926395 115926693 -126737660 - AluJb SINE Alu -13 299 1 5560 246 61 23 chr1 115926693 115927807 -126736546 + ERVL LTR ERVL 3850 5092 -672 477 209 79 43 chr1 115927807 115927902 -126736451 + MLT2F LTR ERVL 518 621 -42 606 12 36 0 chr1 115927902 115927985 -126736368 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 477 209 79 43 chr1 115927985 115928028 -126736325 + MLT2F LTR ERVL 621 661 -2 1936 143 0 27 chr1 115928043 115928368 -126735985 + AluSx SINE Alu 1 317 0 674 355 24 8 chr1 115930886 115931137 -126733216 + MIR SINE MIR 8 262 0 2276 105 0 7 chr1 115931341 115931646 -126732707 + AluSx SINE Alu 1 303 -9 878 280 114 19 chr1 115932106 115932431 -126731922 - L2 LINE L2 0 3313 2958 31 68 0 0 chr1 115932935 115932994 -126731359 + AT_rich Low_complexity Low_complexity 1 59 0 709 315 0 11 chr1 115933424 115933659 -126730694 - MIR SINE MIR 0 262 32 227 122 73 0 chr1 115934011 115934052 -126730301 + MLT1K LTR MaLR 537 580 -8 184 167 100 50 chr1 115934252 115934312 -126730041 - L3 LINE CR1 -12 1565 1503 485 290 18 47 chr1 115934592 115934761 -126729592 - MIR3 SINE MIR 0 208 45 26 0 0 0 chr1 115936073 115936099 -126728254 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 115936424 115936449 -126727904 + AT_rich Low_complexity Low_complexity 1 25 0 293 319 6 30 chr1 115937223 115937389 -126726964 - L1ME LINE L1 -308 5858 5697 342 0 0 0 chr1 115938215 115938253 -126726100 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 415 296 143 47 chr1 115938381 115939100 -126725253 + L2 LINE L2 1858 2717 -597 201 260 31 94 chr1 115939242 115939369 -126724984 + L2 LINE L2 2922 3040 -232 209 232 54 0 chr1 115939515 115939571 -126724782 + L2 LINE L2 3255 3313 0 276 283 328 0 chr1 115939766 115939943 -126724410 + MIR SINE MIR 28 262 0 204 125 0 0 chr1 115940342 115940374 -126723979 + (A)n Simple_repeat Simple_repeat 1 32 0 244 329 76 0 chr1 115940529 115940608 -126723745 + L2 LINE L2 3100 3184 -88 252 307 168 0 chr1 115940633 115940734 -126723619 + MIR SINE MIR 47 164 -98 983 308 108 18 chr1 115940801 115941153 -126723200 - MLT1H1 LTR MaLR 0 555 165 2021 155 64 45 chr1 115941153 115941378 -126722975 - MSTC LTR MaLR 0 428 190 2237 107 0 10 chr1 115941378 115941686 -126722667 - AluSx SINE Alu -7 305 1 2021 155 64 45 chr1 115941686 115941880 -126722473 - MSTC LTR MaLR -238 190 1 983 308 108 18 chr1 115941880 115941907 -126722446 - MLT1H1 LTR MaLR -390 165 142 1790 169 23 22 chr1 115941915 115942409 -126721944 - L1PA16 LINE L1 -678 5488 4999 3593 124 20 5 chr1 115942409 115943015 -126721338 + L1PA16 LINE L1 5495 6166 0 262 302 107 19 chr1 115943024 115943183 -126721170 - MLT1H1 LTR MaLR -421 174 2 1965 82 67 8 chr1 115944464 115944732 -126719621 - AluSq SINE Alu -18 295 12 2396 129 22 64 chr1 115945599 115946049 -126718304 - Tigger2a DNA MER2_type -1 433 3 2326 109 48 28 chr1 115946276 115946633 -126717720 - THE1B LTR MaLR 0 364 1 250 276 0 66 chr1 115946941 115947017 -126717336 - L2 LINE L2 -2 3311 3241 235 234 0 0 chr1 115947067 115947114 -126717239 + MER63 DNA MER1_type 703 749 -312 276 247 191 11 chr1 115947167 115947256 -126717097 + L2 LINE L2 3207 3311 -2 2523 37 3 0 chr1 115947301 115947596 -126716757 + AluY SINE Alu 1 296 -15 1528 213 73 49 chr1 115947757 115948250 -126716103 - MLT1D LTR MaLR 0 505 1 194 264 19 0 chr1 115948383 115948436 -126715917 + MIR SINE MIR 46 99 -109 2166 103 0 13 chr1 115948908 115949209 -126715144 + AluSg1 SINE Alu 1 297 -12 748 215 31 70 chr1 115950612 115950840 -126713513 + MER20 DNA MER1_type 1 219 0 181 159 14 14 chr1 115950867 115950936 -126713417 + (TA)n Simple_repeat Simple_repeat 1 69 0 180 135 0 0 chr1 115950976 115951013 -126713340 + (TA)n Simple_repeat Simple_repeat 2 38 0 216 227 0 0 chr1 115951244 115951363 -126712990 + (TA)n Simple_repeat Simple_repeat 1 119 0 218 185 12 0 chr1 115951419 115951500 -126712853 + (TA)n Simple_repeat Simple_repeat 1 82 0 2833 69 5 5 chr1 115951602 115951978 -126712375 + L1PA7 LINE L1 5772 6147 -7 244 373 42 48 chr1 115952380 115952635 -126711718 - L2 LINE L2 -634 2680 2428 1180 201 22 114 chr1 115952635 115953037 -126711316 + MLT1A1 LTR MaLR 1 365 0 244 373 42 48 chr1 115953037 115953215 -126711138 - L2 LINE L2 -886 2428 2250 589 227 30 56 chr1 115953216 115953414 -126710939 + LTR40a LTR ERVL 1 193 -326 6270 157 23 12 chr1 115953414 115954526 -126709827 + L1MB3 LINE L1 16 1140 -5244 9821 218 27 19 chr1 115954531 115958051 -126706302 + L1MB3 LINE L1 2865 6408 -11 1095 248 31 31 chr1 115958067 115958385 -126705968 + LTR40a LTR ERVL 184 501 -18 394 134 12 12 chr1 115958538 115958620 -126705733 + CT-rich Low_complexity Low_complexity 1 82 0 1801 173 29 10 chr1 115960263 115960569 -126703784 + AluJb SINE Alu 1 312 0 1806 158 17 3 chr1 115961017 115961309 -126703044 - AluJo SINE Alu -16 296 1 240 306 0 27 chr1 115962038 115962149 -126702204 + HAL1b LINE L1 343 450 -898 240 271 29 0 chr1 115962166 115962236 -126702117 - L2 LINE L2 -1005 2309 2238 449 269 48 0 chr1 115962238 115962383 -126701970 - Charlie8 DNA MER1_type -2203 214 63 316 248 89 82 chr1 115962502 115962772 -126701581 + L1ME LINE L1 4714 4985 -1161 21 0 0 0 chr1 115962786 115962807 -126701546 + AT_rich Low_complexity Low_complexity 1 21 0 495 281 101 26 chr1 115963015 115963289 -126701064 - MLT1H LTR MaLR -218 331 1 2588 146 2 11 chr1 115963461 115963899 -126700454 - L1PB4 LINE L1 -3 6153 5720 247 296 83 59 chr1 115964046 115964299 -126700054 + L1ME LINE L1 5402 5660 -461 21 0 0 0 chr1 115964408 115964429 -126699924 + AT_rich Low_complexity Low_complexity 1 21 0 230 234 16 47 chr1 115964510 115964574 -126699779 - L2 LINE L2 -227 3086 3025 209 70 0 70 chr1 115965148 115965170 -126699183 + (TTTC)n Simple_repeat Simple_repeat 1 20 -20 4924 91 6 4 chr1 115965170 115965866 -126698487 - L1PB1 LINE L1 0 6151 5455 209 70 0 70 chr1 115965866 115965886 -126698467 + (TTTC)n Simple_repeat Simple_repeat 20 40 0 335 252 26 61 chr1 115967694 115967809 -126696544 + MIR SINE MIR 152 262 0 382 298 168 62 chr1 115967875 115968307 -126696046 - L2 LINE L2 -68 3245 2762 504 375 17 17 chr1 115968312 115968600 -126695753 - L2 LINE L2 -662 2652 2365 1126 174 23 41 chr1 115969359 115969578 -126694775 - AluJo SINE Alu -12 300 86 234 338 44 39 chr1 115969896 115970100 -126694253 - L2 LINE L2 -176 3096 2892 291 28 0 0 chr1 115970177 115970213 -126694140 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr1 115970212 115970234 -126694119 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 2060 93 0 4 chr1 115970252 115970532 -126693821 - AluY SINE Alu -32 279 1 258 114 23 57 chr1 115970604 115970692 -126693661 + CT-rich Low_complexity Low_complexity 3 87 0 1781 140 25 14 chr1 115970692 115970874 -126693479 - AluSx SINE Alu 0 321 142 447 68 0 0 chr1 115970874 115970933 -126693420 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2238 85 0 0 chr1 115970933 115971215 -126693138 - AluSc SINE Alu -27 282 1 1781 140 25 14 chr1 115971215 115971347 -126693006 - AluSx SINE Alu -178 143 3 49 32 0 0 chr1 115971356 115971419 -126692934 + AT_rich Low_complexity Low_complexity 1 63 0 541 175 29 10 chr1 115971546 115971649 -126692704 + AluJo SINE Alu 30 134 -178 370 319 84 18 chr1 115972378 115972710 -126691643 + L1MC/D LINE L1 5258 5611 -2197 21 0 0 0 chr1 115972909 115972930 -126691423 + AT_rich Low_complexity Low_complexity 1 21 0 430 349 87 13 chr1 115973238 115973616 -126690737 + LTR16C LTR ERVL 86 491 0 557 310 98 0 chr1 115973665 115973849 -126690504 + MIR SINE MIR 46 247 -15 21 0 0 0 chr1 115974573 115974594 -126689759 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 115974787 115974815 -126689538 + AT_rich Low_complexity Low_complexity 1 28 0 44 63 0 0 chr1 115975005 115975084 -126689269 + AT_rich Low_complexity Low_complexity 1 79 0 21 71 0 0 chr1 115976034 115976076 -126688277 + AT_rich Low_complexity Low_complexity 1 42 0 1680 170 0 14 chr1 115976095 115976383 -126687970 - AluJo SINE Alu -24 288 5 3995 132 36 0 chr1 115977676 115978306 -126686047 + MER39B LTR ERV1 1 653 0 2502 60 0 0 chr1 115978956 115979255 -126685098 - AluY SINE Alu -8 303 5 200 286 13 26 chr1 115979331 115979408 -126684945 + MIR SINE MIR 70 145 -63 248 262 78 48 chr1 115979502 115979605 -126684748 + L2 LINE L2 3208 3313 0 811 235 70 58 chr1 115980004 115980247 -126684106 - MIR SINE MIR -14 248 3 225 0 0 0 chr1 115981214 115981239 -126683114 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2340 65 10 0 chr1 115983744 115984051 -126680302 - AluSp SINE Alu -3 310 1 312 341 0 0 chr1 115984242 115984327 -126680026 + MIR SINE MIR 45 129 -79 797 198 29 17 chr1 115984976 115985148 -126679205 + MER5B DNA MER1_type 5 178 0 651 300 178 16 chr1 115985519 115986194 -126678159 + L2 LINE L2 2517 3308 -5 255 250 114 15 chr1 115986653 115986769 -126677584 - MER112 DNA MER1_type -43 217 85 2219 84 0 0 chr1 115986769 115987043 -126677310 + AluSc SINE Alu 12 285 -24 255 250 114 15 chr1 115987043 115987058 -126677295 - MER112 DNA MER1_type -175 85 73 26 0 0 0 chr1 115987762 115987788 -126676565 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 115987989 115988014 -126676339 + AT_rich Low_complexity Low_complexity 1 25 0 278 164 0 0 chr1 115988657 115988712 -126675641 - L1MA3 LINE L1 0 6305 6251 2734 89 18 0 chr1 115988727 115989107 -126675246 - L1PA10 LINE L1 -5 6163 5777 6787 114 9 28 chr1 115989107 115990263 -126674090 + L1P4 LINE L1 4213 5342 -826 2439 81 0 0 chr1 115990263 115990571 -126673782 + AluY SINE Alu 1 308 -3 6787 114 9 28 chr1 115990571 115990993 -126673360 + L1P4 LINE L1 5342 5770 -398 754 258 11 6 chr1 115991097 115991279 -126673074 + MER5A DNA MER1_type 3 185 -4 1001 196 75 114 chr1 115991366 115991885 -126672468 - MLT1E3 LTR MaLR -2 622 156 1797 123 37 113 chr1 115992021 115992428 -126671925 + MER51B LTR ERV1 2 377 0 2227 137 50 48 chr1 115992795 115993255 -126671098 + LOR1b LTR ERV1 1 461 0 264 279 70 29 chr1 115993263 115993435 -126670918 - L1ME3A LINE L1 -94 6076 5898 308 306 63 0 chr1 115993436 115993547 -126670806 - L1ME3A LINE L1 -310 5860 5743 219 329 26 0 chr1 115993691 115993767 -126670586 - MIR SINE MIR 0 262 185 323 307 120 7 chr1 115993770 115993920 -126670433 - L2 LINE L2 0 3313 3147 3655 162 81 114 chr1 115993936 115995876 -126668477 - pTR5 LTR ERV1 0 2438 375 290 79 0 0 chr1 115995876 115995914 -126668439 - Alu SINE Alu -23 279 242 194 254 85 17 chr1 115995919 115995978 -126668375 - MIR SINE MIR -95 167 105 206 306 61 10 chr1 115996137 115996235 -126668118 - MIR SINE MIR -73 189 87 331 171 0 11 chr1 115996239 115996315 -126668038 - L1ME1 LINE L1 -308 5858 5794 268 313 71 0 chr1 115996589 115996688 -126667665 - L2 LINE L2 -21 3251 3146 380 82 16 0 chr1 115997091 115997152 -126667201 + (TG)n Simple_repeat Simple_repeat 2 63 0 329 315 30 42 chr1 115998123 115998288 -126666065 - MER5B DNA MER1_type -11 167 5 39 0 0 0 chr1 115998352 115998391 -126665962 + AT_rich Low_complexity Low_complexity 1 39 0 356 302 144 32 chr1 115998798 115999076 -126665277 - L2 LINE L2 0 3313 3005 359 267 49 31 chr1 115999167 115999481 -126664872 - HAL1 LINE L1 -1444 1063 549 1566 133 27 55 chr1 115999502 115999832 -126664521 - THE1B LTR MaLR -43 321 1 11030 145 7 1 chr1 115999832 116001401 -126662952 - THE1B-int LTR MaLR -1 1579 1 1963 123 24 54 chr1 116001403 116001776 -126662577 - THE1B LTR MaLR -2 362 1 436 256 148 31 chr1 116001804 116002027 -126662326 - HAL1 LINE L1 -2134 373 125 297 75 0 0 chr1 116002027 116002067 -126662286 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 209 188 42 0 chr1 116002095 116002143 -126662210 + A-rich Low_complexity Low_complexity 4 53 0 411 261 109 0 chr1 116002248 116002367 -126661986 - MIR SINE MIR -73 189 58 22 0 0 0 chr1 116002781 116002803 -126661550 + AT_rich Low_complexity Low_complexity 1 22 0 1305 235 8 32 chr1 116003313 116003692 -126660661 + MLT1A2 LTR MaLR 1 370 -4 2308 192 13 7 chr1 116004127 116004585 -126659768 + LOR1b LTR ERV1 1 461 0 1913 197 6 6 chr1 116005560 116005925 -126658428 + MLT1A1 LTR MaLR 1 365 0 1497 302 32 13 chr1 116005985 116006610 -126657743 - L1MC4a LINE L1 -1908 5900 5264 184 176 0 0 chr1 116006842 116006876 -126657477 - L2 LINE L2 0 3313 3280 2045 198 30 0 chr1 116006885 116007280 -126657073 + MER47B DNA MER2_type 2 408 -10 5044 299 125 47 chr1 116007297 116009061 -126655292 - L2 LINE L2 -48 3265 1639 1820 193 11 30 chr1 116009061 116009429 -126654924 - MLT1A1 LTR MaLR -2 363 3 5044 299 125 47 chr1 116009429 116010077 -126654276 - L2 LINE L2 -1674 1639 1043 2012 169 5 56 chr1 116010077 116010486 -126653867 + MLT1B LTR MaLR 1 388 -2 5044 299 125 47 chr1 116010486 116011030 -126653323 - L2 LINE L2 -2270 1043 79 3316 110 30 0 chr1 116011982 116012480 -126651873 - LTR10D LTR ERV1 0 513 1 216 97 0 0 chr1 116012605 116012636 -126651717 + (GGGGA)n Simple_repeat Simple_repeat 5 35 0 1709 254 118 31 chr1 116012846 116012905 -126651448 - HAL1 LINE L1 -995 1512 1460 207 0 0 0 chr1 116012905 116012928 -126651425 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1709 254 118 31 chr1 116012928 116013704 -126650649 - HAL1 LINE L1 -1047 1460 604 545 354 95 0 chr1 116013714 116013957 -126650396 - HAL1 LINE L1 -2222 285 20 273 271 10 21 chr1 116014140 116014236 -126650117 + L1MC5 LINE L1 7816 7910 -51 2351 84 3 0 chr1 116014776 116015072 -126649281 - AluSp SINE Alu -16 297 1 2353 60 47 3 chr1 116015330 116015628 -126648725 - AluY SINE Alu 0 311 1 2049 114 7 0 chr1 116015630 116015928 -126648425 - AluSp SINE Alu -13 300 1 409 315 33 33 chr1 116016201 116016385 -126647968 + MER20B DNA MER1_type 2 185 -598 23 54 0 0 chr1 116016640 116016677 -126647676 + AT_rich Low_complexity Low_complexity 1 37 0 925 222 37 23 chr1 116016830 116017046 -126647307 - MER20 DNA MER1_type 0 219 1 2788 167 49 16 chr1 116019577 116020069 -126644284 + MLT2B2 LTR ERVL 3 510 -5 438 237 0 11 chr1 116020069 116020162 -126644191 - MER44D DNA MER2_type 0 705 614 210 197 0 66 chr1 116020162 116020223 -126644130 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 1597 186 14 0 chr1 116020299 116020595 -126643758 + MER47A DNA MER2_type 65 364 -2 236 108 0 0 chr1 116020599 116020636 -126643717 - MER44D DNA MER2_type -90 515 479 * 2565 159 15 34 chr1 116020633 116021098 -126643255 - MER44D DNA MER2_type -94 511 1 659 121 0 0 chr1 116021189 116021288 -126643065 + AluS SINE Alu 1 99 -214 463 250 92 74 chr1 116022656 116023092 -126641261 + L1ME LINE L1 2230 2679 -3747 23 78 0 0 chr1 116023408 116023459 -126640894 + AT_rich Low_complexity Low_complexity 1 51 0 391 312 69 15 chr1 116023569 116023771 -126640582 + L1ME LINE L1 5545 5757 -2331 315 214 42 24 chr1 116023804 116023887 -126640466 + L1ME LINE L1 5760 5845 -597 270 315 45 9 chr1 116024430 116024541 -126639812 + LTR67 LTR ERVL 435 549 -8 255 293 66 9 chr1 116024545 116024651 -126639702 + L1ME LINE L1 5895 6006 -436 815 344 118 31 chr1 116024854 116025647 -126638706 + L2 LINE L2 2150 3019 -253 696 243 99 45 chr1 116025726 116026170 -126638183 - L1MC5 LINE L1 -232 7729 7262 337 218 14 82 chr1 116026261 116026408 -126637945 - L1MC4 LINE L1 -699 7262 7126 333 301 19 0 chr1 116026384 116026487 -126637866 - L1MC5 LINE L1 -861 7100 6996 * 1382 233 44 34 chr1 116026488 116026895 -126637458 - LTR52 LTR ERVL -5 416 6 418 318 8 0 chr1 116026946 116027072 -126637281 - LTR52-int LTR ERVL -2427 3258 3132 583 250 20 14 chr1 116027080 116027228 -126637125 - LTR52-int LTR ERVL -1993 1563 1415 1427 248 86 50 chr1 116027290 116027733 -126636620 - MLT1E LTR MaLR -125 468 10 1047 294 31 28 chr1 116027790 116028150 -126636203 - L1MEc LINE L1 -6001 395 35 28 29 0 0 chr1 116028280 116028315 -126636038 + AT_rich Low_complexity Low_complexity 1 35 0 615 261 70 4 chr1 116028454 116028684 -126635669 - L1ME4a LINE L1 -240 5881 5637 569 306 65 0 chr1 116029113 116029299 -126635054 + MIR SINE MIR 41 238 -24 1530 250 46 23 chr1 116029676 116030108 -126634245 + MER70A LTR ERVL 4 445 -27 6941 51 0 0 chr1 116030284 116031150 -126633203 - L1PA5 LINE L1 -896 5250 4385 7135 36 1 49 chr1 116031153 116032094 -126632259 + L1PA5 LINE L1 5254 6149 -5 6190 184 41 28 chr1 116032098 116032185 -126632168 - L1MC3 LINE L1 -16 7769 7685 3171 161 33 56 chr1 116032185 116032844 -126631509 + MER73 LTR ERVL 1 644 0 6190 184 41 28 chr1 116032844 116034084 -126630269 - L1MC3 LINE L1 -100 7685 6425 21 57 0 0 chr1 116034349 116034384 -126629969 + AT_rich Low_complexity Low_complexity 1 35 0 829 329 111 0 chr1 116034725 116035120 -126629233 + L2 LINE L2 2863 3301 -12 22 0 0 0 chr1 116035628 116035650 -126628703 + AT_rich Low_complexity Low_complexity 1 22 0 1967 118 10 28 chr1 116036587 116036906 -126627447 - AluSx SINE Alu 0 314 1 197 373 34 25 chr1 116036991 116037109 -126627244 - MIR SINE MIR -61 147 29 958 171 39 25 chr1 116037644 116037946 -126626407 + THE1C LTR MaLR 1 375 0 2825 45 3 8 chr1 116038258 116038613 -126625740 - L1PA4 LINE L1 -8 6147 5795 4121 56 4 0 chr1 116038803 116039323 -126625030 - L1PA7 LINE L1 -2 6152 5631 581 119 0 0 chr1 116039323 116039407 -126624946 - AluS SINE Alu -229 84 1 345 100 0 100 chr1 116039915 116039985 -126624368 - Charlie5 DNA MER1_type -28 2584 2522 1152 259 102 30 chr1 116040170 116040564 -126623789 + MER77 LTR ERV1 177 598 -7 652 113 27 13 chr1 116040714 116040864 -126623489 - Charlie5 DNA MER1_type -88 2524 2373 194 234 0 39 chr1 116041237 116041314 -126623039 + CT-rich Low_complexity Low_complexity 1 74 0 839 219 30 50 chr1 116041386 116041587 -126622766 + MER20 DNA MER1_type 23 219 0 295 370 59 0 chr1 116041708 116041843 -126622510 - MIR SINE MIR -1 261 119 234 0 0 0 chr1 116041947 116041973 -126622380 + (TA)n Simple_repeat Simple_repeat 1 26 0 2213 139 65 3 chr1 116041974 116042326 -126622027 - LTR57 LTR ERVL -37 374 1 722 298 165 11 chr1 116042619 116042982 -126621371 + LTR16C LTR ERVL 72 490 -1 245 314 58 12 chr1 116043616 116043702 -126620651 + L3 LINE CR1 249 338 -1239 2168 83 14 0 chr1 116043931 116044221 -126620132 + AluY SINE Alu 1 294 -17 29 60 0 0 chr1 116044365 116044415 -126619938 + AT_rich Low_complexity Low_complexity 1 50 0 233 236 14 14 chr1 116046030 116046102 -126618251 + (TATG)n Simple_repeat Simple_repeat 3 74 0 440 265 0 0 chr1 116046229 116046331 -126618022 + MER99 DNA DNA 2 103 -725 31 58 0 0 chr1 116046508 116046560 -126617793 + AT_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr1 116046664 116046696 -126617657 + AT_rich Low_complexity Low_complexity 1 32 0 1813 186 5 47 chr1 116047007 116047389 -126616964 + MER99 DNA DNA 212 577 -251 23 0 0 0 chr1 116047888 116047911 -126616442 + AT_rich Low_complexity Low_complexity 1 23 0 670 237 43 63 chr1 116049176 116049383 -126614970 + MIR SINE MIR 2 204 -58 311 287 153 13 chr1 116049579 116049729 -126614624 - MIR SINE MIR -81 181 11 2778 180 22 38 chr1 116049817 116050043 -126614310 + MLT2B3 LTR ERVL 1 229 -325 198 0 0 0 chr1 116050043 116050065 -126614288 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 351 0 0 0 chr1 116050064 116050103 -126614250 + (TG)n Simple_repeat Simple_repeat 2 40 0 2778 180 22 38 chr1 116050065 116050425 -126613928 + MLT2B3 LTR ERVL 229 540 -14 1600 182 37 10 chr1 116050516 116050812 -126613541 + AluJo SINE Alu 1 304 -8 569 261 190 0 chr1 116050813 116051008 -126613345 + MIR SINE MIR 21 252 -10 288 223 27 9 chr1 116051493 116051605 -126612748 + (TA)n Simple_repeat Simple_repeat 1 114 0 366 366 139 38 chr1 116051913 116051954 -126612399 - L2 LINE L2 -669 2645 2610 872 230 5 0 chr1 116051954 116052141 -126612212 + MER5A DNA MER1_type 1 188 -1 366 366 139 38 chr1 116052141 116052804 -126611549 - L2 LINE L2 -704 2610 1870 877 264 29 26 chr1 116052853 116053163 -126611190 + L1MC3 LINE L1 3 313 -5732 2019 218 27 0 chr1 116053227 116053640 -126610713 - LTR53 LTR ERVL 0 519 96 1806 198 77 60 chr1 116053640 116053763 -126610590 + MER74A LTR ERVL 1 120 -438 2198 115 7 0 chr1 116053763 116054068 -126610285 - AluSc SINE Alu -2 307 1 1806 198 77 60 chr1 116054068 116054464 -126609889 + MER74A LTR ERVL 120 529 -29 400 185 0 0 chr1 116054501 116054566 -126609787 - LTR53 LTR ERVL -426 93 29 5722 224 65 9 chr1 116054568 116056328 -126608025 + L1MC3 LINE L1 4011 5860 -743 202 167 15 15 chr1 116056340 116056406 -126607947 + A-rich Low_complexity Low_complexity 5 70 0 9211 171 18 20 chr1 116056437 116059201 -126605152 + L1PB2 LINE L1 2995 5757 -394 2248 39 95 3 chr1 116059201 116059485 -126604868 + AluY SINE Alu 1 310 -1 9211 171 18 20 chr1 116059485 116059873 -126604480 + L1PB2 LINE L1 5757 6144 -7 1312 198 58 17 chr1 116059922 116059942 -126604411 + L1MC3 LINE L1 6262 6280 -1923 1818 174 25 16 chr1 116059942 116060305 -126604048 + MER47A DNA MER2_type 1 366 0 1312 198 58 17 chr1 116060305 116060628 -126603725 + L1MC3 LINE L1 6280 6619 -1584 1444 66 5 50 chr1 116060651 116060849 -126603504 + AluY SINE Alu 1 189 -122 227 234 0 0 chr1 116161134 116161181 -126503172 - MIR SINE MIR 0 262 216 534 250 8 16 chr1 116161481 116161605 -126502748 - MLT1J LTR MaLR -318 193 71 355 231 123 15 chr1 116161636 116161766 -126502587 - MIR SINE MIR -28 234 91 1264 111 31 40 chr1 116161872 116162097 -126502256 - L1MB7 LINE L1 -54 6130 5908 250 256 0 0 chr1 116162102 116162192 -126502161 - L1MC4 LINE L1 -1339 6703 6614 2170 118 0 13 chr1 116162193 116162499 -126501854 - AluSq SINE Alu -10 303 2 3436 156 22 35 chr1 116162499 116163174 -126501179 - L1MB7 LINE L1 -264 5920 5255 436 255 208 0 chr1 116163432 116163581 -126500772 - MER5A DNA MER1_type 0 189 10 532 283 88 25 chr1 116163670 116163895 -126500458 + MIR SINE MIR 18 254 -8 369 326 38 0 chr1 116164259 116164391 -126499962 - MIR SINE MIR -6 256 120 302 328 134 15 chr1 116164433 116164634 -126499719 + MIR SINE MIR 19 243 -19 345 220 33 22 chr1 116164675 116164766 -126499587 - MIR SINE MIR -154 108 17 568 197 150 0 chr1 116165122 116165249 -126499104 - MER69 DNA AcHobo -1080 146 1 23 33 0 0 chr1 116165433 116165463 -126498890 + AT_rich Low_complexity Low_complexity 1 30 0 377 335 62 19 chr1 116166770 116166931 -126497422 - L2 LINE L2 -21 3292 3125 579 332 109 44 chr1 116167171 116167514 -126496839 - L2 LINE L2 -435 2879 2560 2302 181 14 12 chr1 116167514 116167939 -126496414 - MSTB LTR MaLR 0 426 1 579 332 109 44 chr1 116167939 116168225 -126496128 - L2 LINE L2 -754 2560 2209 232 291 213 0 chr1 116168525 116168769 -126495584 - L2 LINE L2 -1289 2025 1730 189 0 0 0 chr1 116169943 116169964 -126494389 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 279 54 0 0 chr1 116170044 116170081 -126494272 + (CA)n Simple_repeat Simple_repeat 1 37 0 694 268 87 17 chr1 116173443 116173674 -126490679 + MIR SINE MIR 3 249 -13 223 283 0 17 chr1 116173693 116173753 -126490600 - L3 LINE CR1 -151 1426 1368 216 336 115 0 chr1 116173811 116173915 -126490438 - L3 LINE CR1 -354 1223 1108 213 205 0 0 chr1 116173982 116174021 -126490332 + (CA)n Simple_repeat Simple_repeat 2 40 0 964 9 0 0 chr1 116174213 116174322 -126490031 + L1PA2 LINE L1 6043 6151 -4 196 327 91 0 chr1 116174837 116174947 -126489406 - L3 LINE CR1 -821 756 637 366 234 149 14 chr1 116175105 116175246 -126489107 - MER103 DNA DNA -3 163 4 285 326 70 57 chr1 116175352 116175579 -126488774 - L3 LINE CR1 -1138 439 210 452 337 32 26 chr1 116175602 116175792 -126488561 - MIR SINE MIR -36 226 36 758 219 73 36 chr1 116176379 116176598 -126487755 - MIR SINE MIR 0 262 36 2319 100 0 3 chr1 116176678 116176977 -126487376 - AluSq SINE Alu -15 298 1 815 241 36 18 chr1 116177436 116177660 -126486693 - MER46C DNA MER2_type -32 306 79 27 49 0 0 chr1 116177694 116177735 -126486618 + AT_rich Low_complexity Low_complexity 1 41 0 784 251 62 13 chr1 116177778 116178005 -126486348 + MIR SINE MIR 1 238 -24 2068 127 24 0 chr1 116179354 116179645 -126484708 + AluSx SINE Alu 1 298 -14 362 252 87 10 chr1 116179746 116179849 -126484504 + MIR3 SINE MIR 91 201 -7 483 249 68 68 chr1 116179944 116180121 -126484232 + MER69A DNA AcHobo 1 177 0 207 323 21 54 chr1 116180509 116180602 -126483751 - L2 LINE L2 -16 3297 3208 559 263 124 18 chr1 116182298 116182515 -126481838 - MIR SINE MIR -2 260 21 502 312 142 41 chr1 116182632 116182850 -126481503 - MIR SINE MIR -21 241 2 207 0 0 0 chr1 116183410 116183433 -126480920 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 116184536 116184559 -126479794 + AT_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr1 116185444 116185474 -126478879 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 257 314 0 0 chr1 116188306 116188376 -126475977 - MIR SINE MIR -119 143 74 239 71 24 0 chr1 116189031 116189073 -126475280 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1626 109 0 18 chr1 116189078 116189307 -126475046 - AluY SINE Alu -6 305 81 22 35 0 0 chr1 116189365 116189394 -126474959 + AT_rich Low_complexity Low_complexity 1 29 0 494 214 243 35 chr1 116190637 116190810 -126473543 - MIR SINE MIR -6 256 48 397 325 92 12 chr1 116191349 116191512 -126472841 - MIR3 SINE MIR -1 207 32 29 47 0 0 chr1 116192533 116192576 -126471777 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr1 116192600 116192628 -126471725 + AT_rich Low_complexity Low_complexity 1 28 0 230 176 33 11 chr1 116195097 116195188 -126469165 + CT-rich Low_complexity Low_complexity 1 93 0 201 176 0 0 chr1 116195325 116195359 -126468994 + A-rich Low_complexity Low_complexity 1 34 0 1116 121 31 67 chr1 116199169 116199393 -126464960 + MER20 DNA MER1_type 2 217 -2 1472 259 224 31 chr1 116199862 116200957 -126463396 - L2 LINE L2 0 3313 2016 375 333 28 14 chr1 116200971 116201112 -126463241 - L2 LINE L2 -2047 1267 1125 5395 188 18 12 chr1 116201121 116203130 -126461223 - L1PB4 LINE L1 -14 6142 4125 280 239 94 69 chr1 116203131 116203290 -126461063 - L2 LINE L2 -2174 1140 978 22 35 0 0 chr1 116205352 116205381 -126458972 + AT_rich Low_complexity Low_complexity 1 29 0 203 190 0 86 chr1 116205395 116205453 -126458900 + L2 LINE L2 3248 3300 -13 237 33 0 0 chr1 116205453 116205483 -126458870 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 271 297 30 20 chr1 116208015 116208116 -126456237 + MIR SINE MIR 16 117 -91 206 289 0 84 chr1 116208192 116208275 -126456078 - MIR SINE MIR -71 191 116 23 54 0 0 chr1 116208643 116208680 -126455673 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 116209035 116209056 -126455297 + AT_rich Low_complexity Low_complexity 1 21 0 2067 123 3 19 chr1 116209184 116209493 -126454860 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr1 116211178 116211206 -126453147 + AT_rich Low_complexity Low_complexity 1 28 0 1136 188 62 10 chr1 116213519 116213827 -126450526 - MER33 DNA MER1_type 0 324 1 245 301 143 82 chr1 116214873 116215152 -126449201 - L2 LINE L2 0 3272 2977 267 31 0 0 chr1 116215197 116215229 -126449124 + (TG)n Simple_repeat Simple_repeat 1 32 0 289 330 9 9 chr1 116215352 116215464 -126448889 - L2 LINE L2 -546 2768 2657 545 280 97 14 chr1 116216275 116216482 -126447871 + MIR SINE MIR 22 245 -17 815 224 44 10 chr1 116217461 116217668 -126446685 - MLT1D LTR MaLR -315 190 1 424 314 245 29 chr1 116218436 116219032 -126445321 + L3 LINE CR1 832 1556 -21 256 270 158 33 chr1 116221128 116221280 -126443073 + MIR3 SINE MIR 31 201 -7 281 269 256 6 chr1 116221353 116221509 -126442844 - MIR SINE MIR 0 262 68 1677 173 44 3 chr1 116221610 116221928 -126442425 - MER58B DNA MER1_type 0 341 11 202 226 19 0 chr1 116223809 116223862 -126440491 + (TTCA)n Simple_repeat Simple_repeat 1 54 0 330 313 134 0 chr1 116223866 116223978 -126440375 - L2 LINE L2 -2 3270 3144 180 281 16 16 chr1 116224078 116224142 -126440211 - MIR3 SINE MIR -6 202 139 453 245 135 25 chr1 116224184 116224347 -126440006 - MIR SINE MIR -1 261 81 582 214 214 7 chr1 116224361 116224506 -126439847 + MER5A DNA MER1_type 12 186 -3 23 0 0 0 chr1 116224810 116224833 -126439520 + AT_rich Low_complexity Low_complexity 1 23 0 379 257 29 37 chr1 116225199 116225335 -126439018 - MER5B DNA MER1_type -41 137 3 284 314 65 8 chr1 116226238 116226362 -126437991 + MIR SINE MIR 117 247 -15 231 114 0 0 chr1 116227011 116227046 -126437307 + (T)n Simple_repeat Simple_repeat 1 35 0 588 258 76 5 chr1 116227912 116228110 -126436243 + MIR SINE MIR 51 262 0 2749 148 11 9 chr1 116228349 116228803 -126435550 + MSTB2 LTR MaLR 3 457 0 24 32 0 0 chr1 116229646 116229677 -126434676 + AT_rich Low_complexity Low_complexity 1 31 0 516 263 69 13 chr1 116229690 116229888 -126434465 - MIR SINE MIR -28 234 30 310 331 62 14 chr1 116230687 116230832 -126433521 - MIR SINE MIR -63 199 48 2336 100 0 0 chr1 116230984 116231285 -126433068 - AluSq SINE Alu -12 301 1 31 26 0 0 chr1 116233547 116233585 -126430768 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 116234945 116234969 -126429384 + AT_rich Low_complexity Low_complexity 1 24 0 185 262 24 48 chr1 116236692 116236776 -126427577 - MER5A DNA MER1_type -21 168 87 944 312 66 28 chr1 116236983 116237449 -126426904 - L2 LINE L2 -1 3271 2762 2299 89 20 3 chr1 116237449 116237753 -126426600 - AluSc SINE Alu 0 309 1 944 312 66 28 chr1 116237753 116237988 -126426365 - L2 LINE L2 -510 2762 2537 597 303 124 5 chr1 116238218 116238436 -126425917 + MIR SINE MIR 6 249 -13 372 353 30 12 chr1 116238731 116238898 -126425455 - MIR SINE MIR -69 193 24 236 241 17 0 chr1 116241314 116241372 -126422981 - L2 LINE L2 -86 3227 3169 465 230 24 48 chr1 116242278 116242404 -126421949 - L2 LINE L2 0 3313 3191 210 214 0 0 chr1 116243346 116243388 -126420965 + MIR SINE MIR 206 247 -15 * 285 260 189 59 chr1 116243359 116243528 -126420825 - MIR SINE MIR -33 229 39 2356 87 0 7 chr1 116244737 116245037 -126419316 + AluSg SINE Alu 1 298 -12 1557 126 122 8 chr1 116245376 116245675 -126418678 - AluSx SINE Alu 0 328 1 224 339 0 15 chr1 116245686 116245751 -126418602 - L2 LINE L2 -18 3295 3232 240 270 33 65 chr1 116246273 116246488 -126417865 - L1ME4a LINE L1 -33 6088 5881 383 239 57 75 chr1 116247885 116248044 -126416309 - MIR SINE MIR -67 195 40 192 40 0 0 chr1 116248644 116248669 -126415684 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 355 251 82 49 chr1 116250345 116250470 -126413883 + MER117 DNA MER1_type 4 138 -59 1436 208 84 42 chr1 116250470 116250850 -126413503 - MSTD LTR MaLR 0 396 1 355 251 82 49 chr1 116250850 116250907 -126413446 + MER117 DNA MER1_type 138 192 -5 271 243 321 21 chr1 116251217 116251357 -126412996 + MIR3 SINE MIR 23 204 -4 858 154 16 50 chr1 116251683 116251865 -126412488 - MER20 DNA MER1_type -42 177 2 185 314 98 68 chr1 116252133 116252471 -126411882 + L2 LINE L2 2067 2414 -900 769 259 278 22 chr1 116252824 116253454 -126410899 - LTR50 LTR ERVL -4 791 1 243 0 0 0 chr1 116257977 116258004 -126406349 + (A)n Simple_repeat Simple_repeat 1 27 0 916 323 29 36 chr1 116259920 116260447 -126403906 + MER115 DNA AcHobo 171 693 0 1338 213 37 3 chr1 116263693 116263989 -126400364 + MER33 DNA MER1_type 19 324 0 216 97 0 0 chr1 116265102 116265133 -126399220 + (CATA)n Simple_repeat Simple_repeat 4 34 0 243 270 16 16 chr1 116265166 116265229 -126399124 - L2 LINE L2 -7 3306 3244 2163 121 0 3 chr1 116265591 116265889 -126398464 + AluSx SINE Alu 1 297 -15 745 211 39 22 chr1 116265911 116266091 -126398262 - MER5A DNA MER1_type -6 183 1 228 222 42 14 chr1 116266179 116266251 -126398102 + MIR SINE MIR 136 209 -53 201 264 0 0 chr1 116266413 116266466 -126397887 - MIR3 SINE MIR -1 207 155 250 352 113 30 chr1 116267811 116268031 -126396322 + L2 LINE L2 2779 3014 -258 352 64 21 0 chr1 116268060 116268107 -126396246 - MLT1G LTR MaLR 0 590 543 361 259 238 0 chr1 116268290 116268417 -126395936 - MLT1G LTR MaLR -396 171 16 1347 168 50 53 chr1 116269134 116269437 -126394916 + MLT1B LTR MaLR 4 305 -85 475 302 183 14 chr1 116269518 116269939 -126394414 - L2 LINE L2 -1 3312 2821 200 214 0 0 chr1 116270099 116270141 -126394212 + L2 LINE L2 3230 3271 -1 979 262 228 18 chr1 116270400 116271271 -126393082 + L2 LINE L2 2258 3313 0 269 328 16 16 chr1 116271290 116271415 -126392938 - MER117 DNA MER1_type -72 125 1 191 340 0 0 chr1 116272593 116272640 -126391713 - L2 LINE L2 -15 3257 3211 505 323 108 0 chr1 116273007 116273239 -126391114 + MIR SINE MIR 4 260 -2 219 383 85 15 chr1 116273681 116273882 -126390471 + L2 LINE L2 2437 2651 -663 321 261 53 22 chr1 116274614 116274751 -126389602 + MIR SINE MIR 48 190 -68 795 161 0 0 chr1 116276162 116276274 -126388079 + FRAM SINE Alu 40 151 -25 902 237 188 37 chr1 116276285 116276690 -126387663 - LTR33 LTR ERVL -45 476 11 1111 234 19 0 chr1 116277125 116277339 -126387014 - MER58A DNA MER1_type -6 218 1 2328 114 0 9 chr1 116277554 116277869 -126386484 + AluSx SINE Alu 1 312 0 186 289 0 0 chr1 116278897 116278942 -126385411 - L2 LINE L2 -4 3309 3265 5565 96 16 3 chr1 116279220 116279951 -126384402 - L1PA10 LINE L1 0 6168 5428 3639 139 12 8 chr1 116279952 116280570 -126383783 + L1M LINE L1 4800 5419 -743 183 139 0 0 chr1 116281552 116281588 -126382765 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 273 96 55 96 chr1 116282465 116282505 -126381848 + MADE1 DNA Mariner 1 37 -43 435 38 0 0 chr1 116282505 116282558 -126381795 + MADE1 DNA Mariner 1 53 -27 240 343 27 0 chr1 116282722 116282795 -126381558 - MIR3 SINE MIR -49 159 85 575 186 211 29 chr1 116282871 116283075 -126381278 - MER69 DNA AcHobo 0 2526 2286 13236 134 20 11 chr1 116283077 116284842 -126379511 + Tigger1 DNA MER2_type 3 1792 -626 2000 118 3 0 chr1 116284842 116285130 -126379223 + L1MA4A LINE L1 6009 6297 -6 13236 134 20 11 chr1 116285130 116285415 -126378938 + Tigger1 DNA MER2_type 1792 2073 -345 2858 86 19 16 chr1 116285415 116285789 -126378564 + THE1C LTR MaLR 1 375 0 9958 116 32 44 chr1 116285789 116287372 -126376981 + THE1C-int LTR MaLR 1 1563 -17 2388 135 10 44 chr1 116287422 116287808 -126376545 + THE1C LTR MaLR 1 373 -2 2293 155 0 0 chr1 116287811 116288159 -126376194 + Tigger1 DNA MER2_type 2070 2417 -1 906 242 33 0 chr1 116288159 116288401 -126375952 - MER69 DNA AcHobo -238 2288 2039 2095 283 25 27 chr1 116288402 116289041 -126375312 - MER69 DNA AcHobo -586 640 3 1903 145 20 26 chr1 116289246 116289550 -126374803 + AluSx SINE Alu 2 303 -9 333 270 59 80 chr1 116289879 116290116 -126374237 - MIR SINE MIR -5 257 26 243 306 56 0 chr1 116290122 116290194 -126374159 - L2 LINE L2 -35 3237 3162 951 309 90 34 chr1 116290272 116290718 -126373635 + L2 LINE L2 2843 3313 0 325 283 75 8 chr1 116292201 116292321 -126372032 - L2 LINE L2 -424 2890 2763 241 314 0 26 chr1 116292326 116292420 -126371933 - MIR SINE MIR -108 100 9 269 342 30 80 chr1 116292932 116293195 -126371158 + L2 LINE L2 2365 2614 -700 309 51 0 0 chr1 116293294 116293333 -126371020 + (CA)n Simple_repeat Simple_repeat 2 40 0 305 207 128 0 chr1 116293389 116293489 -126370864 - MLT1I LTR MaLR 0 419 315 2389 170 49 11 chr1 116293495 116293942 -126370411 - LTR32 LTR ERVL 0 471 8 312 231 83 28 chr1 116294099 116294207 -126370146 - MLT1I LTR MaLR -293 116 3 2278 104 0 3 chr1 116294317 116294616 -126369737 - AluSx SINE Alu -14 298 1 8083 16 0 0 chr1 116296133 116297406 -126366947 - L1PA4 LINE L1 -3 6152 4890 2495 40 0 61 chr1 116297420 116297749 -126366604 + AluY SINE Alu 1 309 -2 214 300 113 25 chr1 116298700 116298780 -126365573 - MIR3 SINE MIR -110 98 12 635 237 123 34 chr1 116299043 116299378 -126364975 + L2 LINE L2 2751 3124 -189 231 36 0 0 chr1 116299526 116299554 -126364799 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 406 287 94 50 chr1 116301128 116301330 -126363023 - MIR SINE MIR -21 241 31 235 288 12 25 chr1 116301348 116301428 -126362925 + MIR SINE MIR 167 245 -17 223 288 0 0 chr1 116301546 116301605 -126362748 - L2 LINE L2 -2 3311 3253 180 318 59 35 chr1 116302262 116302347 -126362006 + MIR3 SINE MIR 10 96 -112 1005 232 68 0 chr1 116302674 116302881 -126361472 + MER58A DNA MER1_type 2 222 -2 544 240 80 64 chr1 116304051 116304473 -126359880 + MLT1J LTR MaLR 1 461 -21 181 213 120 67 chr1 116304722 116304797 -126359556 + L2 LINE L2 3193 3271 -1 471 329 26 0 chr1 116306383 116306538 -126357815 + MIR SINE MIR 34 192 -70 1299 40 0 0 chr1 116306950 116307099 -126357254 - L1PA6 LINE L1 -2 6152 6004 340 281 34 0 chr1 116307129 116307218 -126357135 - MIR SINE MIR -83 125 34 243 88 0 0 chr1 116308115 116308149 -126356204 + (T)n Simple_repeat Simple_repeat 1 34 0 258 167 0 0 chr1 116309454 116309496 -126354857 + MLT1K LTR MaLR 545 586 -2 435 282 38 30 chr1 116310393 116310524 -126353829 + L2 LINE L2 3115 3246 -26 235 65 43 0 chr1 116311776 116311822 -126352531 + A-rich Low_complexity Low_complexity 1 48 0 460 187 67 2 chr1 116312012 116312155 -126352198 + MER53 DNA DNA 2 185 -4 807 208 31 0 chr1 116313420 116313579 -126350774 + MER5A DNA MER1_type 2 165 -24 566 122 0 0 chr1 116314029 116314103 -126350250 - AluSq SINE Alu -20 293 220 1185 115 0 0 chr1 116314103 116314259 -126350094 - AluSq SINE Alu -157 156 1 792 147 15 0 chr1 116314259 116314395 -126349958 + L1MD3 LINE L1 7845 7982 -13 322 314 55 41 chr1 116315965 116316236 -126348117 - L1ME4a LINE L1 -246 5875 5601 1017 342 93 25 chr1 116316321 116317319 -126347034 + L2 LINE L2 2241 3313 0 941 225 9 28 chr1 116319074 116319287 -126345066 + MER3 DNA MER1_type 1 209 0 1934 128 3 54 chr1 116319295 116319608 -126344745 + AluSx SINE Alu 1 297 -15 2427 100 0 0 chr1 116319608 116319918 -126344435 + AluSg SINE Alu 1 310 0 1243 151 19 15 chr1 116320154 116320359 -126343994 + MER6B DNA MER2_type 5 210 0 928 315 19 22 chr1 116320394 116320756 -126343597 - L2 LINE L2 -1 3312 2952 300 286 95 27 chr1 116321168 116321315 -126343038 - L3 LINE CR1 -12 1565 1409 219 301 60 0 chr1 116321580 116321663 -126342690 - MIR3 SINE MIR -2 206 119 480 346 97 15 chr1 116321788 116322314 -126342039 + L2 LINE L2 1932 2500 -814 260 354 130 27 chr1 116322485 116323048 -126341305 + L2 LINE L2 945 1565 -1749 234 234 0 0 chr1 116323033 116323080 -126341273 - L2 LINE L2 0 3313 3267 * 891 278 171 13 chr1 116323149 116323624 -126340729 - L2 LINE L2 -47 3266 2704 1553 132 132 15 chr1 116323956 116324222 -126340131 + L1PB3 LINE L1 5857 6153 -1 233 308 199 41 chr1 116324222 116324418 -126339935 + L2 LINE L2 2770 2992 -321 787 277 142 92 chr1 116324511 116325056 -126339297 + L2 LINE L2 1716 2232 -1082 324 118 0 20 chr1 116325056 116325107 -126339246 + L1PB4 LINE L1 6040 6089 -67 787 277 142 92 chr1 116325107 116325504 -126338849 + L2 LINE L2 2232 2758 -556 408 245 10 20 chr1 116325663 116325765 -126338588 + L2 LINE L2 3177 3277 -36 501 169 40 90 chr1 116325780 116325957 -126338396 - L2 LINE L2 0 3313 3146 287 136 12 37 chr1 116325960 116326041 -126338312 + (TA)n Simple_repeat Simple_repeat 2 80 0 1797 247 77 75 chr1 116326066 116326314 -126338039 - L2 LINE L2 -155 3158 2912 2363 142 11 3 chr1 116326314 116326666 -126337687 - THE1A LTR MaLR 0 355 1 1797 247 77 75 chr1 116326666 116327187 -126337166 - L2 LINE L2 -401 2912 2377 204 40 0 0 chr1 116328323 116328348 -126336005 + (A)n Simple_repeat Simple_repeat 1 25 0 278 244 13 13 chr1 116329613 116329691 -126334662 - MER116 DNA Mariner -1 79 2 256 333 88 13 chr1 116329878 116330037 -126334316 - MIR3 SINE MIR -17 191 21 303 227 51 119 chr1 116330676 116330852 -126333501 - MLT1L LTR MaLR -417 198 35 375 289 161 14 chr1 116330853 116331071 -126333282 - L1ME LINE L1 -316 5805 5556 1076 275 125 25 chr1 116332423 116332895 -126331458 + LTR33 LTR ERVL 3 521 0 1524 284 82 22 chr1 116333014 116333596 -126330757 - MLT2E LTR ERVL -9 619 3 238 271 164 45 chr1 116333625 116333894 -126330459 - L2 LINE L2 0 3313 3013 539 297 95 27 chr1 116333987 116334283 -126330070 + L2 LINE L2 1738 2053 -1261 * 565 185 62 31 chr1 116334270 116334400 -126329953 + L2 LINE L2 3179 3312 -1 * 1327 303 111 24 chr1 116334398 116335012 -126329341 - L2 LINE L2 -1230 2084 1418 1481 301 67 25 chr1 116335015 116335646 -126328707 + L2 LINE L2 2078 2734 -580 983 184 47 117 chr1 116335646 116336035 -126328318 - MSTB1 LTR MaLR 0 396 1 584 266 119 36 chr1 116336181 116336433 -126327920 + L2 LINE L2 3038 3310 -3 395 274 26 0 chr1 116336478 116336595 -126327758 - L2 LINE L2 -642 2672 2553 489 303 90 22 chr1 116336721 116336899 -126327454 - MIR3 SINE MIR -3 205 16 2451 173 81 2 chr1 116337945 116338378 -126325975 + MLT1C LTR MaLR 1 467 0 436 296 183 17 chr1 116338425 116338921 -126325432 + L2 LINE L2 2667 3300 -13 207 88 0 0 chr1 116338922 116338956 -126325397 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 978 209 59 60 chr1 116339393 116339882 -126324471 + MLT1F1 LTR MaLR 1 565 -2 1710 100 131 4 chr1 116339965 116340084 -126324269 + AluSq SINE Alu 1 104 -209 285 51 0 0 chr1 116340084 116340123 -126324230 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1710 100 131 4 chr1 116340123 116340263 -126324090 + AluSq SINE Alu 104 293 -20 809 199 85 81 chr1 116340402 116340455 -126323898 - MIR SINE MIR -14 248 197 2309 78 7 0 chr1 116340455 116340748 -126323605 + AluSp SINE Alu 1 295 -18 809 199 85 81 chr1 116340748 116340940 -126323413 - MIR SINE MIR -65 197 2 465 146 127 24 chr1 116341728 116341841 -126322512 + L1PA8 LINE L1 6040 6158 0 234 305 48 76 chr1 116342063 116342168 -126322185 + MIR3 SINE MIR 2 103 -105 440 251 219 16 chr1 116342911 116343094 -126321259 - MIR SINE MIR -6 256 37 265 289 48 0 chr1 116343300 116343383 -126320970 - MIR SINE MIR -24 238 152 2188 117 0 7 chr1 116343531 116343838 -126320515 + AluSq SINE Alu 1 305 -8 966 217 81 13 chr1 116344520 116344755 -126319598 + MIR SINE MIR 2 252 -10 10653 194 31 4 chr1 116344886 116346832 -126317521 + MERVL LTR ERVL 2880 4879 -606 182 65 65 0 chr1 116350838 116350869 -126313484 + A-rich Low_complexity Low_complexity 2 34 0 300 53 0 0 chr1 116351334 116351372 -126312981 + (TG)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr1 116351372 116351398 -126312955 + (CG)n Simple_repeat Simple_repeat 1 26 0 440 271 15 30 chr1 116352020 116352153 -126312200 + MIR3 SINE MIR 71 201 -7 360 259 72 48 chr1 116353486 116353652 -126310701 - MIR SINE MIR -5 257 88 1165 257 73 59 chr1 116353787 116354265 -126310088 + MLT1J LTR MaLR 22 506 -5 1130 70 0 0 chr1 116354976 116355118 -126309235 - AluY SINE Alu -9 302 161 222 340 34 34 chr1 116355660 116355807 -126308546 + L2 LINE L2 2256 2402 -912 245 315 97 88 chr1 116356137 116356559 -126307794 + L2 LINE L2 2807 3232 -40 7490 20 0 1 chr1 116358786 116359636 -126304717 - L1PA3 LINE L1 -4 6151 5303 11118 28 4 1 chr1 116359636 116360941 -126303412 + L1PA3 LINE L1 3996 5303 -843 239 309 125 44 chr1 116361277 116361413 -126302940 - L2 LINE L2 -8 3264 3118 1402 279 53 32 chr1 116361502 116362054 -126302299 + L2 LINE L2 2421 3063 -250 402 300 42 77 chr1 116362443 116362703 -126301650 + L2 LINE L2 3050 3300 -13 227 54 27 0 chr1 116362703 116362740 -126301613 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 222 293 12 37 chr1 116362954 116363036 -126301317 + L3 LINE CR1 1112 1191 -386 359 288 195 10 chr1 116363180 116363385 -126300968 + L3 LINE CR1 1256 1498 -79 363 60 0 0 chr1 116363921 116363971 -126300382 + (TATG)n Simple_repeat Simple_repeat 3 52 0 1907 129 0 7 chr1 116363986 116364264 -126300089 - AluSx SINE Alu -36 276 1 220 333 0 0 chr1 116364883 116364952 -126299401 - MIR SINE MIR -21 241 173 227 412 20 40 chr1 116365226 116365425 -126298928 - L3 LINE CR1 -56 1521 1327 1566 220 74 38 chr1 116365552 116365998 -126298355 + MLT1C LTR MaLR 6 467 0 662 306 141 33 chr1 116366880 116367364 -126296989 + L2 LINE L2 2222 2757 -557 497 367 68 48 chr1 116367383 116367781 -126296572 + L2 LINE L2 2862 3267 -5 384 22 0 0 chr1 116367784 116367829 -126296524 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 2679 173 86 100 chr1 116368026 116368428 -126295925 - L1MC4 LINE L1 -1 8041 7654 213 39 0 0 chr1 116368428 116368454 -126295899 + (TG)n Simple_repeat Simple_repeat 2 27 0 2679 173 86 100 chr1 116368454 116368844 -126295509 - L1MC4 LINE L1 -388 7654 7260 425 252 36 9 chr1 116369051 116369162 -126295191 - MIR3 SINE MIR -31 177 64 201 191 0 24 chr1 116369380 116369422 -126294931 + CT-rich Low_complexity Low_complexity 3 43 0 21 36 0 0 chr1 116369742 116369770 -126294583 + AT_rich Low_complexity Low_complexity 1 28 0 282 235 74 12 chr1 116370290 116370371 -126293982 - MIR SINE MIR -10 252 167 189 188 0 0 chr1 116370550 116370582 -126293771 + L2 LINE L2 3038 3069 -244 588 222 56 0 chr1 116370614 116370740 -126293613 + L2 LINE L2 3181 3313 0 213 108 0 0 chr1 116372908 116372945 -126291408 + (A)n Simple_repeat Simple_repeat 1 37 0 260 234 186 40 chr1 116373560 116373684 -126290669 - MIR SINE MIR -44 218 77 2137 106 0 14 chr1 116373765 116374079 -126290274 + AluSq SINE Alu 1 313 0 198 0 0 0 chr1 116374495 116374517 -126289836 + (CA)n Simple_repeat Simple_repeat 2 23 0 192 282 34 120 chr1 116374730 116374847 -126289506 - MIR3 SINE MIR -9 199 93 706 146 8 8 chr1 116379502 116379632 -126284721 - AluSg/x SINE Alu -15 294 165 201 182 0 0 chr1 116379981 116380014 -126284339 + L2 LINE L2 3230 3262 -10 281 319 106 40 chr1 116380087 116380432 -126283921 + L2 LINE L2 2770 3142 -171 344 303 160 0 chr1 116380449 116380637 -126283716 - HAL1 LINE L1 -4 2503 2286 1491 239 20 42 chr1 116380884 116381262 -126283091 + MSTD LTR MaLR 1 371 -25 1853 151 84 0 chr1 116381262 116381594 -126282759 + MER46B DNA MER2_type 1 235 -1 1491 239 20 42 chr1 116381594 116381620 -126282733 + MSTD LTR MaLR 371 396 0 1311 270 141 66 chr1 116381620 116382652 -126281701 - HAL1 LINE L1 -568 1939 739 2053 119 7 3 chr1 116382652 116382945 -126281408 - AluSg SINE Alu -16 294 1 1311 270 141 66 chr1 116382945 116383397 -126280956 - HAL1 LINE L1 -1768 739 323 384 283 225 37 chr1 116384714 116384901 -126279452 + MIR SINE MIR 40 261 -1 752 168 90 26 chr1 116385097 116385252 -126279101 + FRAM SINE Alu 2 166 0 34 0 0 0 chr1 116386067 116386101 -126278252 + AT_rich Low_complexity Low_complexity 1 34 0 1120 191 49 0 chr1 116386726 116386951 -126277402 - MER46A DNA MER2_type 0 236 1 180 97 0 0 chr1 116387291 116387322 -126277031 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 294 205 0 0 chr1 116387822 116387905 -126276448 + (TA)n Simple_repeat Simple_repeat 1 83 0 732 252 41 35 chr1 116388088 116388405 -126275948 - L1ME LINE L1 -5183 887 569 1041 235 117 36 chr1 116388427 116388785 -126275568 - L1ME LINE L1 -5678 392 6 789 306 107 21 chr1 116388933 116389514 -126274839 - L1MEd LINE L1 -4881 1238 608 478 194 0 20 chr1 116389543 116389641 -126274712 - AluY SINE Alu -7 304 209 255 191 0 0 chr1 116390439 116390486 -126273867 - L2 LINE L2 -1 3312 3266 652 168 17 0 chr1 116390817 116390936 -126273417 + L1PA15 LINE L1 4794 4914 -1232 5504 122 22 7 chr1 116390940 116391057 -126273296 + L1PA15 LINE L1 4902 5016 -1149 5504 121 22 7 chr1 116391057 116392296 -126272057 + L1PA15 LINE L1 4902 6159 -6 5504 122 22 7 chr1 116392296 116392326 -126272027 + L1PA15 LINE L1 5016 6159 -6 22 0 0 0 chr1 116393143 116393165 -126271188 + AT_rich Low_complexity Low_complexity 1 22 0 1323 171 115 10 chr1 116393616 116393920 -126270433 - MER1B DNA MER1_type 0 337 2 2319 115 33 0 chr1 116444680 116445044 -126219309 + Tigger1 DNA MER2_type 494 869 -1549 414 202 32 0 chr1 116446107 116446201 -126218152 + L1M4 LINE L1 2658 2754 -3392 1271 356 8 14 chr1 116446215 116446802 -126217551 + L1PA13 LINE L1 788 1371 -6203 242 309 75 10 chr1 116446844 116447054 -126217299 + L1PA13 LINE L1 2085 2298 -5276 4344 233 106 5 chr1 116447591 116448702 -126215651 + L1 LINE L1 2442 3726 -2420 180 77 0 0 chr1 116448702 116448728 -126215625 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4344 233 106 5 chr1 116448728 116449018 -126215335 + L1 LINE L1 3726 3985 -2161 3359 208 19 3 chr1 116449007 116449791 -126214562 + L1P LINE L1 4504 5300 -846 * 4898 139 32 13 chr1 116449792 116450715 -126213638 + L1PA16 LINE L1 5224 6162 -4 22 0 0 0 chr1 116450867 116450889 -126213464 + AT_rich Low_complexity Low_complexity 1 22 0 2217 251 43 6 chr1 116450893 116451715 -126212638 + L1M4 LINE L1 2738 3589 -2557 232 295 81 91 chr1 116452462 116452672 -126211681 - L2 LINE L2 -561 2753 2546 633 272 35 104 chr1 116452759 116453105 -126211248 - L2 LINE L2 0 3313 2992 1029 117 105 39 chr1 116453350 116453607 -126210746 + MER33 DNA MER1_type 47 320 -4 247 160 0 0 chr1 116454011 116454061 -126210292 - L1M4 LINE L1 -3882 2264 2215 550 266 153 15 chr1 116454786 116454966 -126209387 + MIR SINE MIR 31 243 -19 225 0 0 0 chr1 116454966 116454991 -126209362 + (TA)n Simple_repeat Simple_repeat 1 25 0 550 266 153 15 chr1 116454991 116455013 -126209340 + MIR SINE MIR 243 261 -1 183 80 0 0 chr1 116455114 116455139 -126209214 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 228 35 0 0 chr1 116455138 116455167 -126209186 + (TA)n Simple_repeat Simple_repeat 1 29 0 28517 111 18 59 chr1 116455628 116459633 -126204720 + L1PA7 LINE L1 12 3656 -2498 2310 107 0 0 chr1 116459633 116459933 -126204420 + AluY SINE Alu 1 300 -11 28517 111 18 59 chr1 116459933 116462322 -126202031 + L1PA7 LINE L1 3656 6141 -13 634 88 0 0 chr1 116462704 116462795 -126201558 + AluY SINE Alu 213 303 -8 526 264 147 43 chr1 116463975 116464444 -126199909 - L1ME4a LINE L1 -52 6069 5552 451 240 152 8 chr1 116464773 116464898 -126199455 + MIR SINE MIR 13 155 -107 322 259 35 98 chr1 116465552 116465628 -126198725 + MER94 DNA DNA 1 80 -54 1821 163 0 3 chr1 116465628 116465910 -126198443 + AluSx SINE Alu 1 281 -31 180 0 0 0 chr1 116465913 116465933 -126198420 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 322 259 35 98 chr1 116465933 116465995 -126198358 + MER94 DNA DNA 82 134 0 205 349 87 13 chr1 116466128 116466277 -126198076 + L2 LINE L2 1797 1956 -1358 1131 271 91 35 chr1 116466431 116466837 -126197516 - MLT1J2 LTR MaLR -21 429 1 1894 164 0 3 chr1 116466875 116467179 -126197174 - AluJb SINE Alu -9 303 1 1655 172 0 8 chr1 116468356 116468623 -126195730 + AluJo SINE Alu 1 265 -47 2830 124 17 0 chr1 116468626 116469038 -126195315 + MLT2A2 LTR ERVL 1 419 -34 1849 163 83 0 chr1 116470053 116470366 -126193987 + MER1B DNA MER1_type 1 339 0 1546 184 53 13 chr1 116470675 116470974 -126193379 - AluJb SINE Alu -1 311 1 475 264 26 80 chr1 116471376 116471728 -126192625 + L1MC4 LINE L1 7618 7950 -92 1016 200 0 5 chr1 116471729 116471914 -126192439 - AluJb SINE Alu -19 293 110 715 209 0 0 chr1 116472351 116472480 -126191873 + FLAM_A SINE Alu 1 129 -4 350 257 154 40 chr1 116472488 116472663 -126191690 + L3 LINE CR1 1216 1410 -167 1822 169 0 7 chr1 116475941 116476242 -126188111 + AluJb SINE Alu 1 299 -13 198 261 140 45 chr1 116476283 116476440 -126187913 + L2 LINE L2 3026 3197 -116 324 325 60 19 chr1 116476577 116476788 -126187565 - MIR SINE MIR -19 243 31 241 329 117 65 chr1 116477066 116477297 -126187056 - L2 LINE L2 -340 2974 2732 2234 209 130 32 chr1 116477304 116477964 -126186389 + MER50 LTR ERV1 10 734 0 206 350 111 17 chr1 116477971 116478088 -126186265 - L2 LINE L2 -587 2727 2600 2042 131 0 19 chr1 116478136 116478450 -126185903 + AluSx SINE Alu 1 308 -4 383 188 211 8 chr1 116478616 116478744 -126185609 + MER103 DNA DNA 6 159 -7 227 255 137 72 chr1 116480449 116480602 -126183751 - MLT1K LTR MaLR -47 541 379 234 159 43 72 chr1 116480705 116480774 -126183579 - MLT1K LTR MaLR -342 246 180 448 296 165 15 chr1 116481031 116481237 -126183116 - MIR SINE MIR -1 261 25 6246 83 16 12 chr1 116481255 116482244 -126182109 - L1PB1 LINE L1 -1 6150 5148 224 233 189 33 chr1 116482966 116483056 -126181297 - L3b LINE CR1 -136 1447 1344 250 279 142 58 chr1 116483702 116483892 -126180461 + MIR SINE MIR 11 216 -46 195 304 58 0 chr1 116484222 116484291 -126180062 + MIR SINE MIR 138 210 -52 190 248 128 9 chr1 116484397 116484506 -126179847 + MIR SINE MIR 134 255 -7 221 169 14 56 chr1 116486295 116486366 -126177987 + T-rich Low_complexity Low_complexity 5 72 0 1776 252 264 31 chr1 116486790 116488247 -126176106 - L2 LINE L2 -56 3257 1476 1893 254 112 81 chr1 116489655 116490865 -126173488 - L1MC4 LINE L1 -15 8027 6781 183 300 80 0 chr1 116490971 116491021 -126173332 + L3 LINE CR1 1521 1574 -3 334 283 8 33 chr1 116491241 116491361 -126172992 + MARNA DNA Mariner 176 292 -294 221 256 0 0 chr1 116491501 116491544 -126172809 - L2 LINE L2 -6 3307 3265 248 338 83 64 chr1 116491622 116491888 -126172465 - L2 LINE L2 -52 3220 2950 2119 149 0 0 chr1 116492117 116492426 -126171927 + AluSx SINE Alu 1 309 -3 591 265 149 42 chr1 116492491 116492706 -126171647 - MIR SINE MIR -22 240 3 212 288 113 80 chr1 116492770 116493072 -126171281 - L2 LINE L2 -652 2662 2351 33 43 0 0 chr1 116495197 116495244 -126169109 + AT_rich Low_complexity Low_complexity 1 47 0 1583 100 36 0 chr1 116495751 116496002 -126168351 + L1MA2 LINE L1 6045 6304 0 1609 162 3 44 chr1 116496011 116496354 -126167999 - AluJo SINE Alu 0 331 1 41 21 0 0 chr1 116496355 116496403 -126167950 + AT_rich Low_complexity Low_complexity 1 48 0 276 330 18 0 chr1 116496524 116496633 -126167720 + (TAG)n Simple_repeat Simple_repeat 1 111 0 25 0 0 0 chr1 116496857 116496882 -126167471 + AT_rich Low_complexity Low_complexity 1 25 0 586 263 25 0 chr1 116497280 116497440 -126166913 - MIR SINE MIR -98 164 1 302 308 122 23 chr1 116497807 116497979 -126166374 - MIR SINE MIR -30 232 44 426 118 0 0 chr1 116499925 116499993 -126164360 - MLT2A2 LTR ERVL -385 68 1 13010 67 8 3 chr1 116499993 116502732 -126161621 - HERVL-A2 LTR ERVL 0 5654 2808 9635 65 9 0 chr1 116502721 116503943 -126160410 - HERVL-A2 LTR ERVL -4421 1233 1 * 339 61 0 136 chr1 116503943 116504009 -126160344 - MLT2A2 LTR ERVL 0 453 397 639 55 90 11 chr1 116504009 116504466 -126159887 + (TA)n Simple_repeat Simple_repeat 1 493 0 21 0 0 0 chr1 116504470 116504491 -126159862 + AT_rich Low_complexity Low_complexity 1 21 0 650 48 83 18 chr1 116504491 116504659 -126159694 + (TA)n Simple_repeat Simple_repeat 1 179 0 1308 81 29 0 chr1 116504661 116504833 -126159520 - MLT2A2 LTR ERVL -73 380 204 2127 121 0 0 chr1 116506536 116506841 -126157512 - AluSq SINE Alu -8 305 1 190 250 111 28 chr1 116507019 116507091 -126157262 - MIR SINE MIR -115 147 70 202 307 53 0 chr1 116507129 116507204 -126157149 - MIR SINE MIR -156 106 28 342 0 0 0 chr1 116507215 116507253 -126157100 + (TG)n Simple_repeat Simple_repeat 2 39 0 433 271 39 8 chr1 116507486 116507615 -126156738 + MER94 DNA DNA 2 134 0 27 0 0 0 chr1 116508156 116508183 -126156170 + AT_rich Low_complexity Low_complexity 1 27 0 249 91 0 0 chr1 116508271 116508304 -126156049 - tRNA-Gln-CAG tRNA tRNA -38 37 5 318 276 39 47 chr1 116509151 116509278 -126155075 - MER94 DNA DNA -6 128 3 226 329 47 0 chr1 116509525 116509610 -126154743 + MIR SINE MIR 18 106 -102 2420 83 0 0 chr1 116509643 116509945 -126154408 + AluSx SINE Alu 5 306 -6 239 340 153 10 chr1 116509946 116510149 -126154204 + MIR SINE MIR 28 259 -3 279 299 15 95 chr1 116510379 116510516 -126153837 - L2 LINE L2 -5 3267 3142 22 56 0 0 chr1 116511292 116511328 -126153025 + AT_rich Low_complexity Low_complexity 1 36 0 2272 113 48 17 chr1 116511491 116511844 -126152509 - THE1B LTR MaLR 0 364 1 657 237 220 0 chr1 116513487 116513673 -126150680 - MIR SINE MIR -6 256 30 21 0 0 0 chr1 116516174 116516195 -126148158 + AT_rich Low_complexity Low_complexity 1 21 0 239 234 13 13 chr1 116516276 116516353 -126148000 + HAL1b LINE L1 1191 1267 -81 180 397 64 0 chr1 116517036 116517114 -126147239 - L2 LINE L2 -54 3218 3136 378 332 23 59 chr1 116517710 116517930 -126146423 - MIR SINE MIR -31 231 20 2160 214 36 51 chr1 116519348 116519842 -126144511 + MER119 DNA MER1_type 3 488 -95 2326 109 0 0 chr1 116519842 116520155 -126144198 + AluSq SINE Alu 1 313 0 2160 214 36 51 chr1 116520155 116520250 -126144103 + MER119 DNA MER1_type 488 583 0 22 0 0 0 chr1 116521239 116521261 -126143092 + AT_rich Low_complexity Low_complexity 1 22 0 249 316 208 6 chr1 116521795 116522108 -126142245 + L2 LINE L2 2295 2670 -644 796 263 104 88 chr1 116522731 116523165 -126141188 - L2 LINE L2 -1 3312 2872 198 339 0 0 chr1 116523529 116523588 -126140765 + L2 LINE L2 3205 3263 -9 288 0 0 0 chr1 116524327 116524359 -126139994 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2393 62 0 7 chr1 116524464 116524803 -126139550 + AluY SINE Alu 1 337 0 217 320 13 0 chr1 116524853 116524931 -126139422 + GA-rich Low_complexity Low_complexity 4 82 0 293 266 109 31 chr1 116525248 116525440 -126138913 + L1ME LINE L1 5620 5826 -295 1015 216 20 0 chr1 116525526 116525730 -126138623 + MSTD LTR MaLR 1 208 -188 1026 160 24 34 chr1 116525768 116525974 -126138379 + MSTD LTR MaLR 193 396 0 441 0 0 0 chr1 116526902 116526951 -126137402 + (CA)n Simple_repeat Simple_repeat 2 50 0 743 262 39 13 chr1 116528081 116528314 -126136039 - MIR SINE MIR -16 246 8 1935 162 0 19 chr1 116528774 116529088 -126135265 + AluSx SINE Alu 1 308 -4 211 120 20 40 chr1 116530117 116530167 -126134186 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 24 53 0 0 chr1 116531232 116531270 -126133083 + AT_rich Low_complexity Low_complexity 1 38 0 1953 95 4 0 chr1 116531886 116532138 -126132215 - AluSx SINE Alu -26 286 34 260 332 134 27 chr1 116532459 116532646 -126131707 + MIR SINE MIR 24 230 -32 379 219 125 0 chr1 116533570 116533666 -126130687 + MIR SINE MIR 81 188 -74 413 254 45 0 chr1 116533739 116533849 -126130504 + L2 LINE L2 3158 3272 0 454 319 8 113 chr1 116533854 116534111 -126130242 - L2 LINE L2 -4 3268 3039 189 233 75 117 chr1 116534752 116534872 -126129481 + L2 LINE L2 3158 3272 0 314 282 134 20 chr1 116535362 116535511 -126128842 - MIR SINE MIR -3 259 94 1051 193 67 14 chr1 116535781 116536004 -126128349 - MER46A DNA MER2_type -1 235 1 197 119 24 0 chr1 116536740 116536782 -126127571 + (TA)n Simple_repeat Simple_repeat 1 43 0 2331 100 0 3 chr1 116536782 116537083 -126127270 - AluSq SINE Alu -13 300 1 22 0 0 0 chr1 116537162 116537184 -126127169 + AT_rich Low_complexity Low_complexity 1 22 0 281 319 11 0 chr1 116537554 116537648 -126126705 - MIR3 SINE MIR -31 177 83 21 57 0 0 chr1 116539025 116539060 -126125293 + AT_rich Low_complexity Low_complexity 1 35 0 274 328 107 15 chr1 116539074 116539205 -126125148 + L2 LINE L2 2613 2755 -559 23 0 0 0 chr1 116539787 116539810 -126124543 + AT_rich Low_complexity Low_complexity 1 23 0 655 253 22 71 chr1 116540698 116540747 -126123606 - L1ME1 LINE L1 -12 6152 6102 2753 19 0 0 chr1 116540747 116541055 -126123298 + AluY SINE Alu 1 308 -3 655 253 22 71 chr1 116541055 116541304 -126123049 - L1ME1 LINE L1 -62 6102 5878 1852 168 16 40 chr1 116541378 116541540 -126122813 + MLT1A1 LTR MaLR 1 165 -200 2012 129 46 38 chr1 116541540 116541912 -126122441 - THE1C LTR MaLR 0 375 1 1852 168 16 40 chr1 116541912 116542123 -126122230 + MLT1A1 LTR MaLR 165 365 0 792 225 190 47 chr1 116542971 116543398 -126120955 + L1ME3A LINE L1 5632 6119 -51 2339 167 35 23 chr1 116543443 116543928 -126120425 + L1MB3 LINE L1 5683 6173 -10 220 157 36 24 chr1 116543928 116544011 -126120342 + (TA)n Simple_repeat Simple_repeat 1 84 0 2136 109 13 10 chr1 116544077 116544388 -126119965 + AluSx SINE Alu 1 312 0 289 167 0 0 chr1 116544393 116544447 -126119906 + L1MC4 LINE L1 6958 7011 -1031 15887 147 36 3 chr1 116544451 116547214 -126117139 + L1M1 LINE L1 16 2869 -4696 1380 82 0 0 chr1 116547214 116547384 -126116969 + AluY SINE Alu 132 301 -10 2680 84 48 18 chr1 116547389 116547843 -126116510 + L1M1 LINE L1 2867 3334 -4231 3606 89 45 9 chr1 116547845 116548404 -126115949 + L1MA3 LINE L1 5726 6304 -1 393 285 36 25 chr1 116548556 116548799 -126115554 + L1MC4 LINE L1 7010 7219 -742 603 291 69 41 chr1 116548906 116549416 -126114937 + L1MC5 LINE L1 7261 7794 -167 502 125 0 0 chr1 116549416 116549504 -126114849 + L1MA5 LINE L1 6213 6300 0 603 291 69 41 chr1 116549504 116549628 -126114725 + L1MC5 LINE L1 7794 7913 -48 315 278 10 41 chr1 116549735 116549832 -126114521 - MIR3 SINE MIR -51 157 64 2082 220 34 28 chr1 116550604 116551104 -126113249 + MLT1D LTR MaLR 3 505 0 1622 164 4 11 chr1 116551636 116551910 -126112443 + AluJo SINE Alu 30 301 -11 21 36 0 0 chr1 116554387 116554415 -126109938 + AT_rich Low_complexity Low_complexity 1 28 0 204 307 79 86 chr1 116555501 116555641 -126108712 + L2 LINE L2 3132 3270 -2 28 29 0 0 chr1 116555790 116555825 -126108528 + AT_rich Low_complexity Low_complexity 1 35 0 1780 138 30 70 chr1 116556868 116557238 -126107115 + MER57A LTR ERV1 44 398 -5 1350 205 54 4 chr1 116557388 116557666 -126106687 + Tigger5 DNA MER2_type 1 292 -2031 358 167 56 0 chr1 116557673 116557745 -126106608 + Tigger5 DNA MER2_type 2247 2322 -1 2470 134 42 0 chr1 116558654 116559078 -126105275 + L1MB3 LINE L1 5742 6183 0 278 339 120 55 chr1 116560281 116560464 -126103889 - MER91A DNA MER1_type 0 196 2 331 176 0 0 chr1 116561259 116561333 -126103020 - L1MA6 LINE L1 0 6300 6227 1982 71 4 16 chr1 116561563 116561842 -126102511 + AluSc SINE Alu 29 304 0 194 297 68 0 chr1 116562567 116562641 -126101712 + L2 LINE L2 3234 3312 -1 2094 134 0 3 chr1 116562676 116562982 -126101371 - AluSx SINE Alu -7 305 1 395 252 60 40 chr1 116563486 116563620 -126100733 - L2 LINE L2 0 3313 3174 2398 97 7 0 chr1 116563620 116563929 -126100424 + AluSq SINE Alu 3 313 0 395 252 60 40 chr1 116563929 116563945 -126100408 - L2 LINE L2 -139 3174 3160 437 296 78 0 chr1 116564368 116564510 -126099843 - MIR SINE MIR -95 167 15 375 339 23 11 chr1 116564562 116564739 -126099614 + L1ME LINE L1 5575 5753 -368 297 369 80 16 chr1 116564967 116565154 -126099199 - MIR SINE MIR -14 248 50 456 335 102 19 chr1 116565570 116565785 -126098568 - MIR SINE MIR -28 234 2 236 308 8 50 chr1 116565888 116566008 -126098345 - L2 LINE L2 -8 3305 3191 212 342 54 27 chr1 116566465 116566614 -126097739 + MIR3 SINE MIR 43 195 -13 2149 120 16 10 chr1 116566637 116566945 -126097408 + AluSx SINE Alu 1 310 -2 1509 211 14 0 chr1 116567374 116567668 -126096685 - AluJb SINE Alu 0 312 15 6680 94 17 0 chr1 116569527 116570545 -126093808 + L1PA13 LINE L1 5119 6152 -11 267 31 0 0 chr1 116570545 116570577 -126093776 + (TA)n Simple_repeat Simple_repeat 1 32 0 335 354 31 31 chr1 116571206 116571367 -126092986 + MIR SINE MIR 25 185 -77 345 265 205 18 chr1 116571393 116571587 -126092766 - MIR SINE MIR -3 259 31 404 246 77 31 chr1 116571676 116571806 -126092547 - MIR3 SINE MIR -70 138 3 866 105 0 0 chr1 116572617 116572731 -126091622 - AluSg/x SINE Alu -13 299 186 426 215 123 43 chr1 116572943 116573106 -126091247 + MIR SINE MIR 53 228 -34 517 249 113 43 chr1 116573140 116573325 -126091028 - MIR SINE MIR 0 262 65 243 291 219 41 chr1 116573671 116573867 -126090486 - L2 LINE L2 -210 3062 2832 191 262 146 10 chr1 116573958 116574061 -126090292 + L2 LINE L2 2423 2539 -775 778 291 210 11 chr1 116574068 116574415 -126089938 - L2 LINE L2 -1619 1695 1280 551 209 22 29 chr1 116574415 116574554 -126089799 - Charlie1 DNA MER1_type -2 2759 2622 572 269 27 68 chr1 116574556 116574775 -126089578 - Charlie1 DNA MER1_type -2546 215 6 1080 264 179 2 chr1 116574775 116575177 -126089176 - L2 LINE L2 -2029 1285 813 330 339 92 36 chr1 116575563 116575920 -126088433 - L2 LINE L2 -1058 2256 1880 286 260 42 21 chr1 116575906 116576002 -126088351 + L2 LINE L2 1642 1739 -1575 * 897 211 108 53 chr1 116576505 116576709 -126087644 + HsTC2 DNA Tc2 1280 1471 -427 1781 68 0 0 chr1 116576709 116576928 -126087425 - L1PA7 LINE L1 -1 6153 5935 897 211 108 53 chr1 116576928 116577046 -126087307 + HsTC2 DNA Tc2 1471 1796 -102 1959 133 3 3 chr1 116577059 116577344 -126087009 + AluSx SINE Alu 1 285 -27 204 67 0 0 chr1 116577344 116577374 -126086979 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3517 235 106 41 chr1 116577382 116578266 -126086087 + L2 LINE L2 1717 2731 -582 1724 149 11 3 chr1 116578266 116578571 -126085782 + AluSx SINE Alu 1 307 0 3517 235 106 41 chr1 116578571 116579191 -126085162 + L2 LINE L2 2731 3309 -4 206 286 114 0 chr1 116580536 116580606 -126083747 - MIR SINE MIR -2 260 183 22 0 0 0 chr1 116582997 116583019 -126081334 + GC_rich Low_complexity Low_complexity 1 22 0 245 191 11 45 chr1 116583310 116583399 -126080954 + G-rich Low_complexity Low_complexity 6 91 0 2394 72 0 0 chr1 116584297 116584602 -126079751 + AluY SINE Alu 1 305 -6 400 288 65 36 chr1 116585125 116585217 -126079136 + MIR SINE MIR 48 147 -115 2332 72 0 26 chr1 116585217 116585523 -126078830 - AluY SINE Alu -13 298 1 400 288 65 36 chr1 116585523 116585569 -126078784 + MIR SINE MIR 147 190 -72 263 287 75 11 chr1 116585586 116585680 -126078673 + MER5A DNA MER1_type 10 109 -80 1228 99 23 6 chr1 116586122 116586293 -126078060 - AluSc SINE Alu -11 298 125 2036 98 0 4 chr1 116586445 116586709 -126077644 - AluSx SINE Alu -43 269 7 310 250 213 22 chr1 116586930 116587066 -126077287 - MIR SINE MIR -8 254 93 302 358 68 27 chr1 116587168 116587316 -126077037 + L2 LINE L2 3119 3272 0 2373 109 0 0 chr1 116587457 116587770 -126076583 - AluSq SINE Alu 0 313 1 2049 98 29 4 chr1 116588146 116588440 -126075913 - AluSx SINE Alu 0 301 1 1845 108 8 4 chr1 116588991 116589249 -126075104 + AluSq SINE Alu 35 293 -20 238 250 0 0 chr1 116589996 116590044 -126074309 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 657 332 34 4 chr1 116590406 116590641 -126073712 - MIR SINE MIR -19 243 2 22 35 0 0 chr1 116590841 116590870 -126073483 + AT_rich Low_complexity Low_complexity 1 29 0 234 128 0 0 chr1 116590933 116590972 -126073381 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 5026 134 73 10 chr1 116592182 116593083 -126071270 + L1MA9 LINE L1 5260 6217 -95 33 0 0 0 chr1 116593710 116593743 -126070610 + AT_rich Low_complexity Low_complexity 1 33 0 192 77 0 0 chr1 116594465 116594491 -126069862 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 282 313 113 0 chr1 116595354 116595469 -126068884 - MIR SINE MIR -28 234 107 393 143 110 22 chr1 116595620 116595711 -126068642 - L1MC5 LINE L1 -31 7930 7832 237 389 15 15 chr1 116595768 116595899 -126068454 - MIR3 SINE MIR -68 140 10 844 219 6 30 chr1 116596044 116596213 -126068140 + FRAM SINE Alu 1 165 -1 2206 122 0 3 chr1 116596555 116596866 -126067487 + AluSg SINE Alu 1 310 0 184 367 0 17 chr1 116597833 116597893 -126066460 - L2 LINE L2 -60 3212 3154 25 31 0 0 chr1 116598941 116598973 -126065380 + AT_rich Low_complexity Low_complexity 1 32 0 1988 151 0 19 chr1 116600038 116600356 -126063997 + AluJb SINE Alu 1 312 0 400 111 0 28 chr1 116600412 116600484 -126063869 + Alu SINE Alu 243 312 0 264 334 29 9 chr1 116600752 116600884 -126063469 + MIR SINE MIR 2 137 -71 737 241 48 92 chr1 116601459 116601708 -126062645 + MIR SINE MIR 3 240 -22 2219 72 27 10 chr1 116601786 116602078 -126062275 - AluSx SINE Alu -15 297 1 281 311 30 8 chr1 116602249 116602381 -126061972 + L3b LINE CR1 1133 1267 -316 354 249 171 33 chr1 116602528 116602709 -126061644 - MIR SINE MIR -28 234 29 517 229 18 0 chr1 116604340 116604449 -126059904 - MER115 DNA AcHobo 0 693 583 183 143 0 0 chr1 116605270 116605298 -126059055 - L2 LINE L2 -19 3253 3226 2118 184 31 29 chr1 116605428 116605986 -126058367 - MLT2A2 LTR ERVL 0 554 1 1854 158 3 3 chr1 116606365 116606657 -126057696 - AluJo SINE Alu -9 303 12 5953 113 3 2 chr1 116607160 116608017 -126056336 + L1PA13 LINE L1 5306 6163 0 242 276 0 0 chr1 116608434 116608492 -126055861 + CT-rich Low_complexity Low_complexity 1 58 0 676 136 122 27 chr1 116609180 116609327 -126055026 - MER65A LTR ERV1 0 445 285 362 283 20 0 chr1 116609546 116609645 -126054708 + MIR SINE MIR 154 254 -8 180 237 0 0 chr1 116610824 116610862 -126053491 - MIR SINE MIR -174 88 51 2935 3 0 0 chr1 116611187 116611498 -126052855 - AluYa5 SINE Alu 0 311 1 520 234 37 7 chr1 116611791 116611936 -126052417 - MIR SINE MIR -37 171 30 222 375 47 16 chr1 116612890 116613018 -126051335 - MIR3 SINE MIR -62 146 15 1825 145 0 25 chr1 116613102 116613384 -126050969 + AluSx SINE Alu 1 275 -37 337 360 29 0 chr1 116613943 116614082 -126050271 + MIR3 SINE MIR 37 179 -29 194 325 62 121 chr1 116614629 116614869 -126049484 - L2 LINE L2 -50 3222 2997 2262 104 3 19 chr1 116615056 116615374 -126048979 + AluSp SINE Alu 1 313 0 447 174 152 11 chr1 116615413 116615505 -126048848 + MIR SINE MIR 12 116 -146 339 136 0 0 chr1 116616711 116616770 -126047583 + (TC)n Simple_repeat Simple_repeat 2 60 0 562 174 0 0 chr1 116616799 116616885 -126047468 + L1PB4 LINE L1 6058 6143 -13 2315 99 0 13 chr1 116617010 116617323 -126047030 + AluSc SINE Alu 1 309 0 742 265 76 20 chr1 116617324 116617573 -126046780 - L1MC4 LINE L1 -1006 7036 6774 235 258 76 0 chr1 116617574 116617640 -126046713 - MIR SINE MIR -187 75 5 207 0 0 0 chr1 116618922 116618945 -126045408 + (T)n Simple_repeat Simple_repeat 1 23 0 208 310 186 16 chr1 116619511 116619640 -126044713 + MIR3 SINE MIR 31 181 -27 37 81 0 0 chr1 116619934 116620020 -126044333 + AT_rich Low_complexity Low_complexity 1 86 0 882 216 12 12 chr1 116620393 116620564 -126043789 - FRAM SINE Alu -12 164 1 1980 137 3 0 chr1 116621132 116621439 -126042914 + AluSq SINE Alu 1 308 -5 189 121 0 0 chr1 116623132 116623165 -126041188 + (CA)n Simple_repeat Simple_repeat 2 34 0 3027 88 3 0 chr1 116623166 116623540 -126040813 + THE1C LTR MaLR 1 375 0 729 281 118 38 chr1 116624267 116624837 -126039516 + L1ME4a LINE L1 5256 5868 -253 25 51 0 0 chr1 116624937 116624976 -126039377 + AT_rich Low_complexity Low_complexity 1 39 0 387 250 147 9 chr1 116627248 116627364 -126036989 - L2 LINE L2 0 3313 3182 342 295 58 35 chr1 116627654 116627827 -126036526 - L1ME LINE L1 -489 5632 5456 454 221 43 36 chr1 116628159 116628299 -126036054 - MLT1K LTR MaLR -36 552 412 237 328 112 0 chr1 116629757 116629882 -126034471 - MIR SINE MIR -111 151 13 25 0 0 0 chr1 116630120 116630145 -126034208 + AT_rich Low_complexity Low_complexity 1 25 0 1720 91 5 0 chr1 116630153 116630374 -126033979 + L1PB1 LINE L1 5928 6149 -2 444 311 119 17 chr1 116630383 116630560 -126033793 + MIR3 SINE MIR 6 200 -8 2762 216 23 25 chr1 116630773 116631328 -126033025 - MLT2B3 LTR ERVL 0 554 1 692 294 80 40 chr1 116632281 116632488 -126031865 + L2 LINE L2 2931 3157 -115 940 207 29 24 chr1 116632488 116632696 -126031657 + MER3 DNA MER1_type 1 209 0 692 294 80 40 chr1 116632696 116632815 -126031538 + L2 LINE L2 3157 3270 -2 318 289 31 0 chr1 116633107 116633204 -126031149 - LTR67 LTR ERVL 0 557 458 270 221 53 107 chr1 116633204 116633238 -126031115 - MLT1K LTR MaLR 0 588 465 411 73 0 0 chr1 116633778 116633833 -126030520 + (CA)n Simple_repeat Simple_repeat 2 56 0 2299 118 0 6 chr1 116634143 116634458 -126029895 + AluSq SINE Alu 1 313 0 808 80 0 0 chr1 116635162 116635262 -126029091 - AluS SINE Alu -213 100 1 942 191 14 24 chr1 116635262 116635472 -126028881 + L1MB7 LINE L1 5966 6173 -11 194 263 75 38 chr1 116635757 116635837 -126028516 - L2 LINE L2 -41 3231 3149 330 205 134 27 chr1 116636193 116636305 -126028048 + MIR SINE MIR 73 196 -66 403 91 0 0 chr1 116636619 116636674 -126027679 - MLT2A2 LTR ERVL 0 453 399 366 80 0 0 chr1 116636707 116636757 -126027596 + (TA)n Simple_repeat Simple_repeat 2 51 0 210 37 0 0 chr1 116636773 116636800 -126027553 + (CA)n Simple_repeat Simple_repeat 2 28 0 3110 88 12 0 chr1 116636800 116637199 -126027154 - MLT2A2 LTR ERVL -46 407 1 626 305 102 0 chr1 116637388 116637644 -126026709 - L2 LINE L2 -220 3093 2812 2101 116 33 3 chr1 116637690 116637991 -126026362 + AluSg SINE Alu 1 310 0 312 260 13 0 chr1 116637992 116638069 -126026284 - L2 LINE L2 -1812 1502 1425 823 273 5 0 chr1 116638512 116638710 -126025643 + MIR SINE MIR 5 203 -59 524 281 28 22 chr1 116639074 116639252 -126025101 + LTR16C LTR ERVL 312 490 -1 318 231 0 0 chr1 116639253 116639318 -126025035 + MIR SINE MIR 198 262 0 1015 282 48 12 chr1 116639323 116639656 -126024697 - L2 LINE L2 -2256 1058 714 301 313 0 55 chr1 116639690 116639818 -126024535 - MLT1H LTR MaLR -13 536 416 237 265 61 53 chr1 116639954 116640086 -126024267 - MLT1I LTR MaLR -276 133 1 216 375 39 19 chr1 116641564 116641668 -126022685 + L2 LINE L2 3163 3268 -4 410 278 142 11 chr1 116642462 116642638 -126021715 - L2 LINE L2 0 3313 3115 1174 272 92 88 chr1 116642765 116643184 -126021169 - L2 LINE L2 -413 2901 2485 2184 114 0 22 chr1 116643184 116643500 -126020853 + AluSx SINE Alu 1 309 -3 1174 272 92 88 chr1 116643500 116643513 -126020840 - L2 LINE L2 -829 2485 2474 183 42 0 0 chr1 116643513 116643537 -126020816 + (GAA)n Simple_repeat Simple_repeat 2 25 0 1174 272 92 88 chr1 116643537 116643878 -126020475 - L2 LINE L2 -840 2474 2120 2147 92 34 10 chr1 116643878 116644170 -126020183 - AluSg SINE Alu -11 299 1 1174 272 92 88 chr1 116644170 116644239 -126020114 - L2 LINE L2 -1194 2120 2053 1707 173 0 24 chr1 116644291 116644586 -126019767 - AluJo SINE Alu -24 288 1 353 258 44 23 chr1 116644816 116644967 -126019386 - MLT2E LTR ERVL -343 180 18 1728 180 7 14 chr1 116645296 116645591 -126018762 + AluJo SINE Alu 1 293 -19 406 339 86 64 chr1 116645891 116646496 -126017857 + L2 LINE L2 2550 3178 -94 21 36 0 0 chr1 116646520 116646548 -126017805 + AT_rich Low_complexity Low_complexity 1 28 0 474 274 94 33 chr1 116647125 116647370 -126016983 - MIR SINE MIR 0 262 3 414 57 0 0 chr1 116648077 116648130 -126016223 + (CA)n Simple_repeat Simple_repeat 1 53 0 207 0 0 0 chr1 116648157 116648180 -126016173 + (CA)n Simple_repeat Simple_repeat 1 23 0 1151 151 44 39 chr1 116648420 116648626 -126015727 - AluJo SINE Alu -30 282 76 264 177 48 32 chr1 116648837 116648899 -126015454 + L2 LINE L2 3210 3272 0 444 248 149 50 chr1 116649481 116649642 -126014711 - MER5A DNA MER1_type -4 185 9 474 285 82 13 chr1 116649761 116649919 -126014434 + MIR SINE MIR 21 189 -73 425 293 18 43 chr1 116649921 116650085 -126014268 + MIR SINE MIR 37 196 -66 459 352 115 15 chr1 116650306 116650576 -126013777 + L2 LINE L2 2970 3266 -6 190 236 111 14 chr1 116650906 116650978 -126013375 - L2 LINE L2 -214 3058 2980 701 273 50 21 chr1 116651007 116651245 -126013108 + MIR SINE MIR 18 262 0 190 304 107 27 chr1 116651380 116651492 -126012861 - L2 LINE L2 -629 2685 2565 1886 42 0 0 chr1 116652519 116652736 -126011617 - L1PA5 LINE L1 0 6154 5938 1227 156 16 0 chr1 116652791 116652977 -126011376 + MER5A DNA MER1_type 1 189 0 198 307 126 31 chr1 116653241 116653368 -126010985 + L2 LINE L2 2937 3075 -197 344 261 68 57 chr1 116653716 116653879 -126010474 + MIR SINE MIR 16 180 -65 180 152 0 0 chr1 116655332 116655365 -126008988 + T-rich Low_complexity Low_complexity 1 33 0 1996 162 10 0 chr1 116655367 116655676 -126008677 - AluJo SINE Alu 0 312 1 238 302 43 0 chr1 116656530 116656646 -126007707 + L1ME LINE L1 5685 5805 -316 285 298 79 79 chr1 116658062 116658240 -126006113 - L3 LINE CR1 -90 1487 1310 209 229 202 9 chr1 116658336 116658445 -126005908 + L2 LINE L2 3182 3311 -2 663 239 174 5 chr1 116659508 116659726 -126004627 + MIR SINE MIR 13 243 -19 288 278 24 32 chr1 116659830 116659956 -126004397 + L2 LINE L2 2294 2418 -896 279 268 86 134 chr1 116659977 116660410 -126003943 + L2 LINE L2 2553 2964 -350 547 211 42 14 chr1 116660417 116660559 -126003794 + LTR33A LTR ERVL 375 520 -3 248 250 0 18 chr1 116660772 116660828 -126003525 + L2 LINE L2 3251 3305 -8 307 339 69 8 chr1 116660902 116661032 -126003321 - MIR SINE MIR -71 191 54 803 219 65 5 chr1 116661405 116661620 -126002733 - LTR33A LTR ERVL -8 515 288 1371 177 34 5 chr1 116661649 116662103 -126002250 + MLT1D LTR MaLR 1 497 -8 244 292 150 9 chr1 116662112 116662225 -126002128 - LTR33A LTR ERVL -360 163 35 413 175 75 33 chr1 116663062 116663182 -126001171 + L1MC5 LINE L1 7801 7925 -36 188 276 69 23 chr1 116663509 116663596 -126000757 - L2 LINE L2 -8 3264 3174 1002 281 86 51 chr1 116665294 116665983 -125998370 - L2 LINE L2 0 3313 2595 327 246 33 3 chr1 116666005 116666126 -125998227 - MIR SINE MIR -12 250 85 394 369 87 31 chr1 116666367 116666757 -125997596 - L2 LINE L2 -2824 490 79 524 184 0 0 chr1 116667086 116667189 -125997164 - L1P LINE L1 -1020 5126 5024 196 270 80 140 chr1 116667291 116667491 -125996862 + L2 LINE L2 3027 3214 -58 219 256 37 24 chr1 116667698 116667780 -125996573 - MIR SINE MIR -6 256 174 326 261 98 54 chr1 116668610 116668696 -125995657 + MLT1L LTR MaLR 203 284 -331 5066 88 7 3 chr1 116668696 116669403 -125994950 + L1PA13 LINE L1 5451 6160 -3 326 261 98 54 chr1 116669403 116669500 -125994853 + MLT1L LTR MaLR 284 394 -221 429 157 24 0 chr1 116669555 116669638 -125994715 + MLT1L LTR MaLR 527 611 -4 272 291 13 0 chr1 116670043 116670122 -125994231 - MIR3 SINE MIR -2 206 127 1992 127 36 14 chr1 116671729 116672091 -125992262 + MLT1B LTR MaLR 21 390 0 1833 238 65 35 chr1 116672091 116672736 -125991617 + MER21B LTR ERV1 76 739 -124 2474 58 3 26 chr1 116673596 116673907 -125990446 + AluY SINE Alu 1 304 -7 22 56 0 0 chr1 116674068 116674104 -125990249 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 116674641 116674664 -125989689 + AT_rich Low_complexity Low_complexity 1 23 0 2012 196 143 0 chr1 116674732 116675166 -125989187 + MLT1D LTR MaLR 3 498 -7 5872 103 28 6 chr1 116675573 116676771 -125987582 + L1PA15 LINE L1 4947 6165 0 192 40 0 0 chr1 116677916 116677941 -125986412 + (TG)n Simple_repeat Simple_repeat 2 26 0 959 299 52 10 chr1 116678530 116679031 -125985322 - ERVL LTR ERVL -3115 2649 2046 1079 283 54 6 chr1 116679040 116679376 -125984977 - MLT1I LTR MaLR 0 409 58 465 337 23 40 chr1 116679565 116679865 -125984488 - ERVL LTR ERVL -3869 1895 1601 1068 208 70 35 chr1 116680123 116680573 -125983780 - MLT1B LTR MaLR 0 390 1 253 257 13 13 chr1 116681249 116681354 -125982999 - MLT2F LTR ERVL -530 133 32 1198 261 111 55 chr1 116681418 116681749 -125982604 + HAL1 LINE L1 1677 1988 -519 1936 145 0 23 chr1 116681749 116682053 -125982300 + AluSx SINE Alu 1 297 -15 210 37 0 0 chr1 116682060 116682087 -125982266 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1198 261 111 55 chr1 116682087 116682531 -125981822 + HAL1 LINE L1 1993 2504 -3 523 299 147 6 chr1 116682591 116682748 -125981605 - MER5A DNA MER1_type -2 187 9 258 248 179 26 chr1 116683194 116683311 -125981042 + L3 LINE CR1 1442 1576 -1 2229 99 3 3 chr1 116683409 116683703 -125980650 - AluSq SINE Alu -19 294 1 354 358 0 8 chr1 116684290 116684413 -125979940 - MER5B DNA MER1_type -1 177 56 282 191 15 168 chr1 116684393 116684524 -125979829 - MIR3 SINE MIR -83 125 15 * 675 247 32 14 chr1 116685173 116685392 -125978961 - L1MEc LINE L1 -6143 253 31 1382 261 52 33 chr1 116685529 116686043 -125978310 + LTR45 LTR ERV1 1 524 -1 265 260 0 0 chr1 116686157 116686230 -125978123 - HsTC2 DNA Tc2 -1824 74 2 778 191 62 11 chr1 116686682 116686860 -125977493 - MER5A DNA MER1_type -2 187 1 185 0 40 0 chr1 116687058 116687083 -125977270 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8932 170 81 77 chr1 116687751 116688324 -125976029 - L1MC3 LINE L1 0 7785 7216 317 218 0 46 chr1 116688324 116688411 -125975942 - MLT1F1 LTR MaLR -433 134 52 8932 170 81 77 chr1 116688411 116688648 -125975705 - L1MC3 LINE L1 -569 7216 6981 336 24 0 0 chr1 116688648 116688689 -125975664 + (TG)n Simple_repeat Simple_repeat 2 42 0 8932 170 81 77 chr1 116688689 116689340 -125975013 - L1MC3 LINE L1 -804 6981 6334 1876 122 4 0 chr1 116689340 116689603 -125974750 - AluSx SINE Alu -20 292 29 8932 170 81 77 chr1 116689603 116690489 -125973864 - L1MC3 LINE L1 -1451 6334 5340 197 333 0 32 chr1 116690491 116690554 -125973799 + MER5A DNA MER1_type 128 188 -1 785 319 111 24 chr1 116692360 116692864 -125971489 - L3 LINE CR1 -11 1566 1019 535 280 23 6 chr1 116693142 116693317 -125971036 - MER5B DNA MER1_type 0 178 1 229 325 142 28 chr1 116693518 116694025 -125970328 + L2 LINE L2 583 1147 -2167 249 252 47 79 chr1 116694036 116694163 -125970190 + L2 LINE L2 1963 2085 -1229 239 216 0 0 chr1 116694163 116694214 -125970139 + MER92A LTR ERV1 62 112 -300 320 306 53 24 chr1 116694257 116694427 -125969926 + L2 LINE L2 2197 2371 -943 296 279 73 15 chr1 116694599 116694735 -125969618 + L2 LINE L2 2397 2540 -774 394 227 62 0 chr1 116694735 116694832 -125969521 - L2 LINE L2 -3 3310 3208 2264 215 118 22 chr1 116694848 116695447 -125968906 - MLT2F LTR ERVL -2 661 5 850 284 110 22 chr1 116695640 116696102 -125968251 - MLT1J LTR MaLR -8 503 1 441 352 89 28 chr1 116696104 116696546 -125967807 + L2 LINE L2 2791 3267 -5 198 359 16 0 chr1 116696551 116696615 -125967738 - L3 LINE CR1 -529 1048 984 22 35 0 0 chr1 116697206 116697235 -125967118 + AT_rich Low_complexity Low_complexity 1 29 0 398 224 70 28 chr1 116697457 116697600 -125966753 + L1ME4a LINE L1 5614 5762 -359 332 268 87 16 chr1 116697610 116697737 -125966616 + L1ME4a LINE L1 5799 5934 -187 472 242 8 38 chr1 116699743 116699875 -125964478 + MER94 DNA DNA 4 131 -3 21 36 0 0 chr1 116701805 116701833 -125962520 + AT_rich Low_complexity Low_complexity 1 28 0 967 95 8 0 chr1 116701833 116701959 -125962394 - FLAM_C SINE Alu -16 127 1 24 32 0 0 chr1 116703189 116703220 -125961133 + AT_rich Low_complexity Low_complexity 1 31 0 533 303 33 97 chr1 116703368 116703668 -125960685 - L2 LINE L2 0 3272 2992 465 255 130 25 chr1 116703703 116703864 -125960489 - MIR SINE MIR -73 189 12 1046 149 0 12 chr1 116703902 116704063 -125960290 + AluSg/x SINE Alu 135 293 -17 354 212 94 0 chr1 116704063 116704148 -125960205 + L1MC4 LINE L1 6615 6707 -1335 391 184 10 10 chr1 116705096 116705194 -125959159 + CT-rich Low_complexity Low_complexity 2 99 0 217 164 27 27 chr1 116705639 116705712 -125958641 + (TATAG)n Simple_repeat Simple_repeat 1 73 0 491 310 47 31 chr1 116706371 116706626 -125957727 + L2 LINE L2 2476 2734 -580 653 356 44 20 chr1 116706656 116707108 -125957245 + L1ME4a LINE L1 4150 4612 -1534 455 302 138 54 chr1 116707120 116707428 -125956925 + L1ME4a LINE L1 4783 5064 -1082 297 0 0 0 chr1 116707428 116707461 -125956892 + (TA)n Simple_repeat Simple_repeat 2 34 0 297 0 0 0 chr1 116707460 116707493 -125956860 + (GA)n Simple_repeat Simple_repeat 2 34 0 455 302 138 54 chr1 116707461 116707728 -125956625 + L1ME4a LINE L1 5064 5397 -749 331 312 161 22 chr1 116707812 116708351 -125956002 + L1ME4a LINE L1 5508 6121 0 356 296 5 103 chr1 116708555 116708758 -125955595 + L2 LINE L2 2990 3172 -100 254 314 105 9 chr1 116708788 116708893 -125955460 + L2 LINE L2 3197 3311 -2 1750 207 66 7 chr1 116709199 116709639 -125954714 + MLT1C LTR MaLR 2 467 0 396 274 46 20 chr1 116710511 116710664 -125953689 + MER103 DNA DNA 2 158 -8 253 250 54 0 chr1 116710817 116710873 -125953480 + L3 LINE CR1 1499 1557 -20 572 66 0 0 chr1 116711510 116711586 -125952767 + Alu SINE Alu 230 305 -5 358 298 155 6 chr1 116711599 116711760 -125952593 - MIR SINE MIR -70 192 8 325 314 45 26 chr1 116712413 116712569 -125951784 - MER117 DNA MER1_type -4 193 35 23 0 0 0 chr1 116712651 116712674 -125951679 + AT_rich Low_complexity Low_complexity 1 23 0 732 260 4 64 chr1 116712733 116712983 -125951370 - MLT1H LTR MaLR -218 331 97 1978 118 7 3 chr1 116713312 116713608 -125950745 + L1PA16 LINE L1 5861 6157 -9 23 0 0 0 chr1 116714229 116714252 -125950101 + AT_rich Low_complexity Low_complexity 1 23 0 237 130 109 0 chr1 116714964 116715010 -125949343 - MER53 DNA DNA 0 189 139 662 325 96 56 chr1 116715448 116716001 -125948352 + L1MEd LINE L1 1 575 -5544 974 162 0 36 chr1 116716045 116716212 -125948141 + FAM SINE Alu 1 48 -1 301 282 39 53 chr1 116716478 116716631 -125947722 - LTR33A LTR ERVL -360 161 1 283 264 0 14 chr1 116716714 116716786 -125947567 + MLT1I LTR MaLR 332 402 -7 1129 291 125 25 chr1 116717422 116718199 -125946154 + L1MC4a LINE L1 5949 6803 -1005 * 1568 282 81 46 chr1 116718187 116719388 -125944965 + L1M4 LINE L1 3343 4585 -1561 27 29 0 0 chr1 116719668 116719702 -125944651 + AT_rich Low_complexity Low_complexity 1 34 0 204 274 48 36 chr1 116719792 116719876 -125944477 + L2 LINE L2 3188 3272 0 21 0 0 0 chr1 116720508 116720529 -125943824 + AT_rich Low_complexity Low_complexity 1 21 0 288 97 0 33 chr1 116720529 116720589 -125943764 - L1MA2 LINE L1 0 6305 6248 908 67 0 0 chr1 116720591 116720711 -125943642 + L1M LINE L1 5260 5379 -923 366 283 58 0 chr1 116721324 116721444 -125942909 + MIR SINE MIR 79 205 -57 2507 156 92 55 chr1 116721452 116721997 -125942356 + MER34B LTR ERV1 1 565 0 276 308 0 13 chr1 116722164 116722242 -125942111 + MIR SINE MIR 21 97 -165 2044 134 142 31 chr1 116723377 116723758 -125940595 - MSTA LTR MaLR 0 428 6 1082 90 0 0 chr1 116723779 116723913 -125940440 + AluSq/x SINE Alu 1 134 -179 2134 120 0 0 chr1 116723915 116724215 -125940138 + AluSg SINE Alu 1 300 -10 289 304 82 73 chr1 116725901 116725987 -125938366 + MIR SINE MIR 1 85 -177 2365 99 0 0 chr1 116725987 116726291 -125938062 - AluSc SINE Alu -5 304 1 289 304 82 73 chr1 116726291 116726424 -125937929 + MIR SINE MIR 85 222 -40 470 261 60 50 chr1 116726557 116726775 -125937578 + MLT1L LTR MaLR 347 566 -49 237 62 0 0 chr1 116726777 116726809 -125937544 - MER96B DNA MER1_type? 0 175 144 737 218 0 17 chr1 116726833 116727012 -125937341 - MER96B DNA MER1_type? -239 178 3 309 109 0 0 chr1 116727030 116727076 -125937277 + (T)n Simple_repeat Simple_repeat 1 46 0 358 272 109 60 chr1 116727718 116727930 -125936423 + L1M4 LINE L1 4957 5188 -958 1058 173 18 53 chr1 116727930 116728155 -125936198 + MER20 DNA MER1_type 1 217 -2 358 272 109 60 chr1 116728155 116728225 -125936128 + L1M4 LINE L1 5188 5253 -893 241 219 68 0 chr1 116728655 116728728 -125935625 + MLT1J LTR MaLR 399 476 -35 2552 234 31 30 chr1 116728832 116729470 -125934883 + MER21B LTR ERV1 214 852 -11 6148 64 5 9 chr1 116729550 116730333 -125934020 - L1PA8 LINE L1 -5 6167 5388 479 341 23 23 chr1 116730416 116730633 -125933720 + MIR SINE MIR 46 262 0 236 348 148 9 chr1 116730762 116730877 -125933476 - L2 LINE L2 -5 3267 3137 242 333 10 0 chr1 116731295 116731394 -125932959 - L2 LINE L2 -785 2529 2430 246 321 96 43 chr1 116732244 116732431 -125931922 - MIR3 SINE MIR -8 200 4 423 312 150 11 chr1 116732598 116732957 -125931396 + L2 LINE L2 1687 2095 -1219 313 264 0 14 chr1 116733103 116733175 -125931178 - L2 LINE L2 -2 3311 3241 256 320 128 48 chr1 116733186 116733791 -125930562 + L2 LINE L2 2617 3268 -4 696 148 0 49 chr1 116734709 116734831 -125929522 - FLAM_A SINE Alu -15 127 12 846 283 94 40 chr1 116735620 116736060 -125928293 + L2 LINE L2 2004 2476 -838 1876 126 0 4 chr1 116736060 116736330 -125928023 - AluSx SINE Alu 0 312 44 846 283 94 40 chr1 116736330 116736388 -125927965 + L2 LINE L2 2476 2529 -785 876 126 50 71 chr1 116736502 116736684 -125927669 - MER5B DNA MER1_type 0 178 1 279 189 19 19 chr1 116736800 116736853 -125927500 + Tigger5 DNA MER2_type 1 53 -2270 * 488 193 18 44 chr1 116736842 116736956 -125927397 + Tigger5 DNA MER2_type 2212 2322 -1 1563 179 3 42 chr1 116737160 116737472 -125926881 - AluJo SINE Alu -12 300 1 359 277 7 36 chr1 116739374 116739511 -125924842 - HAL1 LINE L1 -69 2438 2306 264 246 0 18 chr1 116739533 116739590 -125924763 - LTR16C LTR ERVL 0 491 436 252 197 77 60 chr1 116740055 116740106 -125924247 - HAL1 LINE L1 -369 2138 2089 1902 149 3 26 chr1 116740106 116740415 -125923938 - AluJb SINE Alu -10 302 1 252 197 77 60 chr1 116740415 116740480 -125923873 - HAL1 LINE L1 -418 2089 2020 2181 107 3 7 chr1 116740585 116740884 -125923469 - AluSg SINE Alu -12 298 1 457 221 203 0 chr1 116740930 116741093 -125923260 + L1ME2 LINE L1 5772 5967 -197 2401 90 0 0 chr1 116741104 116741404 -125922949 + AluSg SINE Alu 1 300 -10 354 195 13 0 chr1 116741457 116741534 -125922819 + L1MA10 LINE L1 6233 6310 -24 417 230 241 32 chr1 116743960 116744329 -125920024 + L2 LINE L2 2808 3253 -60 2956 71 3 0 chr1 116744342 116744696 -125919657 - THE1A LTR MaLR 0 355 1 12389 90 11 2 chr1 116744696 116746262 -125918091 - THE1A-int LTR MaLR 0 1580 1 1914 144 126 33 chr1 116746262 116746595 -125917758 - THE1A LTR MaLR 0 364 1 22 0 0 0 chr1 116747756 116747778 -125916575 + AT_rich Low_complexity Low_complexity 1 22 0 299 350 81 31 chr1 116750095 116750255 -125914098 - MIR SINE MIR -75 187 20 635 267 71 37 chr1 116750697 116750906 -125913447 + MIR SINE MIR 1 214 -48 468 330 114 57 chr1 116750927 116751294 -125913059 + L2 LINE L2 2871 3258 -14 668 229 65 7 chr1 116751822 116751975 -125912378 + MER106B DNA MER1_type 898 1059 0 21 0 0 0 chr1 116752509 116752530 -125911823 + AT_rich Low_complexity Low_complexity 1 21 0 200 247 117 0 chr1 116752552 116752629 -125911724 - MIR SINE MIR -53 209 124 2019 113 56 0 chr1 116752645 116752929 -125911424 - AluSq SINE Alu -13 300 1 1679 241 51 27 chr1 116753220 116754373 -125909980 + L1MB2 LINE L1 2791 3977 -3588 3441 194 19 19 chr1 116754378 116755053 -125909300 + L1MB2 LINE L1 6915 7589 -1 3602 185 29 24 chr1 116755081 116755796 -125908557 + L1MB4 LINE L1 5442 6160 -20 410 175 0 0 chr1 116755822 116755902 -125908451 + L1MB8 LINE L1 6099 6178 0 282 349 62 0 chr1 116756027 116756156 -125908197 + L2 LINE L2 3136 3272 0 184 319 0 127 chr1 116756988 116757154 -125907199 - L2 LINE L2 -797 2517 2373 555 214 21 88 chr1 116757337 116757461 -125906892 - MER58C DNA MER1_type -2205 215 107 17030 94 12 7 chr1 116757461 116760558 -125903795 - L1PA7 LINE L1 -13 6141 3022 555 214 21 88 chr1 116760558 116760625 -125903728 - MER58C DNA MER1_type -2313 107 37 1833 251 90 6 chr1 116760759 116761257 -125903096 + MLT1F LTR MaLR 2 541 -1 1458 211 34 57 chr1 116761439 116761822 -125902531 + MLT1A2 LTR MaLR 1 374 0 547 308 122 14 chr1 116762349 116762570 -125901783 + MIR SINE MIR 18 262 0 315 186 49 0 chr1 116763351 116763429 -125900924 - MIR SINE MIR -46 162 79 926 313 145 55 chr1 116763447 116763936 -125900417 + L2 LINE L2 1236 1679 -1635 1990 155 0 0 chr1 116763936 116764270 -125900083 + AluSx SINE Alu 1 334 0 926 313 145 55 chr1 116764270 116765376 -125898977 + L2 LINE L2 1679 2976 -338 1727 163 69 0 chr1 116765376 116765664 -125898689 - AluJb SINE Alu -4 308 1 21 0 0 0 chr1 116767086 116767107 -125897246 + AT_rich Low_complexity Low_complexity 1 21 0 306 289 70 0 chr1 116767483 116767597 -125896756 - L2 LINE L2 0 3272 3151 33 66 0 0 chr1 116768530 116768591 -125895762 + AT_rich Low_complexity Low_complexity 1 61 0 318 26 0 0 chr1 116768969 116769008 -125895345 + (CA)n Simple_repeat Simple_repeat 2 40 0 954 233 125 22 chr1 116769025 116769338 -125895015 + MER77 LTR ERV1 255 599 -6 21 0 0 0 chr1 116769372 116769393 -125894960 + AT_rich Low_complexity Low_complexity 1 21 0 190 302 60 74 chr1 116769654 116769803 -125894550 - MIR SINE MIR -10 252 106 329 205 96 0 chr1 116769883 116769966 -125894387 + MIR SINE MIR 110 200 -62 195 306 0 0 chr1 116770017 116770066 -125894287 - MIR SINE MIR -166 96 48 23 0 0 0 chr1 116771167 116771190 -125893163 + AT_rich Low_complexity Low_complexity 1 23 0 183 132 0 0 chr1 116771718 116771739 -125892614 + (A)n Simple_repeat Simple_repeat 1 24 -14 2382 74 3 6 chr1 116771739 116772051 -125892302 + AluY SINE Alu 1 311 0 183 132 0 0 chr1 116772051 116772067 -125892286 + (A)n Simple_repeat Simple_repeat 23 38 0 11116 29 4 101 chr1 116772483 116774018 -125890335 - SVA Other Other 0 1386 1 233 192 19 0 chr1 116774427 116774479 -125889874 - Charlie3 DNA MER1_type -322 2388 2336 40762 34 23 1 chr1 116774815 116780828 -125883525 - L1PA3 LINE L1 0 6155 10 299 237 122 30 chr1 116780945 116781076 -125883277 + L2 LINE L2 3171 3313 0 257 292 167 10 chr1 116781412 116781508 -125882845 + L2 LINE L2 3203 3313 0 628 248 101 53 chr1 116781572 116782442 -125881911 - L1MC/D LINE L1 -746 5400 4532 454 285 164 10 chr1 116782488 116782982 -125881371 - L1MC/D LINE L1 -2348 3798 3229 537 306 100 16 chr1 116783036 116783615 -125880738 - L1MC/D LINE L1 -3010 3136 2509 32 67 0 0 chr1 116783681 116783741 -125880612 + AT_rich Low_complexity Low_complexity 1 60 0 181 302 233 62 chr1 116784608 116784737 -125879616 - L2 LINE L2 0 3272 3122 728 211 141 13 chr1 116784745 116784972 -125879381 - MIR SINE MIR -3 259 4 1982 178 112 0 chr1 116785328 116785711 -125878642 - MSTB LTR MaLR 0 426 1 219 69 0 0 chr1 116785927 116785956 -125878397 + (TAA)n Simple_repeat Simple_repeat 1 29 0 289 172 52 0 chr1 116785976 116786034 -125878319 + L1P1 LINE L1 5401 5461 -694 225 122 24 0 chr1 116786034 116786075 -125878278 - MLT2C2 LTR ERVL 0 464 423 573 121 0 0 chr1 116786113 116786196 -125878157 + AluJb SINE Alu 11 93 -219 2521 107 16 11 chr1 116786197 116786570 -125877783 + THE1C LTR MaLR 1 375 0 9445 117 36 33 chr1 116786570 116788139 -125876214 + THE1C-int LTR MaLR 1 1574 -6 2536 109 11 11 chr1 116788145 116788520 -125875833 + THE1C LTR MaLR 1 375 0 1215 167 28 5 chr1 116788523 116788738 -125875615 + AluJb SINE Alu 93 312 0 619 198 8 0 chr1 116788738 116788864 -125875489 + L1M4 LINE L1 5481 5607 -577 4448 208 38 69 chr1 116788880 116790903 -125873450 + L1M3e LINE L1 2008 4092 -3473 2252 92 3 0 chr1 116790903 116791227 -125873126 + AluSc SINE Alu 1 309 0 4448 208 38 69 chr1 116791227 116791553 -125872800 + L1M3e LINE L1 4092 4228 -3337 2284 69 3 0 chr1 116791553 116791844 -125872509 + AluY SINE Alu 1 292 -19 4448 208 38 69 chr1 116791844 116792119 -125872234 + L1M3e LINE L1 4228 4510 -3055 3841 157 70 38 chr1 116792111 116793022 -125871331 + L1MA8 LINE L1 5352 6291 0 * 406 134 15 0 chr1 116793032 116793099 -125871254 + L1MB7 LINE L1 6105 6172 -12 2232 108 0 3 chr1 116793101 116793398 -125870955 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr1 116793404 116793427 -125870926 + AT_rich Low_complexity Low_complexity 1 23 0 1190 220 120 9 chr1 116793468 116793636 -125870717 + MLT1B LTR MaLR 1 149 -241 459 0 0 0 chr1 116793636 116793687 -125870666 + (TC)n Simple_repeat Simple_repeat 2 52 0 1190 220 120 9 chr1 116793687 116793868 -125870485 + MLT1B LTR MaLR 149 389 -1 182 306 16 0 chr1 116795074 116795136 -125869217 - MIR3 SINE MIR -13 195 133 2114 137 0 0 chr1 116795570 116795877 -125868476 + AluSx SINE Alu 1 307 -5 2931 201 52 28 chr1 116796395 116797031 -125867322 + MER82 DNA MER2_type 3 653 0 1011 234 9 9 chr1 116797613 116797835 -125866518 + MER58A DNA MER1_type 1 222 -2 977 168 140 9 chr1 116798022 116798281 -125866072 + MSTC LTR MaLR 97 428 0 22 0 0 0 chr1 116798517 116798539 -125865814 + AT_rich Low_complexity Low_complexity 1 22 0 1539 173 15 7 chr1 116799325 116799596 -125864757 + AluJo SINE Alu 32 304 -8 2375 95 3 7 chr1 116799815 116800121 -125864232 + AluSp SINE Alu 1 305 -8 751 255 106 32 chr1 116800195 116800945 -125863408 + L1M3e LINE L1 4383 5211 -2354 651 230 40 17 chr1 116800965 116801043 -125863310 + MER7A DNA MER2_type 4 79 -2959 2228 131 19 3 chr1 116801043 116801409 -125862944 + L1PA16 LINE L1 5790 6161 -5 651 230 40 17 chr1 116801409 116801504 -125862849 + MER7A DNA MER2_type 79 179 -167 554 223 34 25 chr1 116801609 116801816 -125862537 - LTR45 LTR ERV1 -1 619 391 1506 193 8 0 chr1 116802270 116802535 -125861818 + Tigger7 DNA MER2_type 1 267 -2220 2028 124 3 10 chr1 116802550 116802848 -125861505 + AluSx SINE Alu 1 296 -16 186 43 0 0 chr1 116802890 116802913 -125861440 + (TA)n Simple_repeat Simple_repeat 2 24 0 537 182 0 0 chr1 116802918 116803006 -125861347 + Tigger7 DNA MER2_type 2499 2586 -1 2739 191 29 9 chr1 116803061 116803607 -125860746 - MER89 LTR ERV1 -2 557 1 2078 132 28 0 chr1 116804158 116804446 -125859907 - AluSx SINE Alu -13 299 4 2281 161 12 2 chr1 116806211 116806621 -125857732 - L1PA16 LINE L1 -16 6150 5737 319 323 130 0 chr1 116807791 116807983 -125856370 - MIR SINE MIR -34 228 12 1984 166 0 3 chr1 116808736 116809037 -125855316 + AluSx SINE Alu 1 300 -12 238 206 29 44 chr1 116809209 116809277 -125855076 - MIR3 SINE MIR -7 201 135 1095 206 36 20 chr1 116809573 116809825 -125854528 - MLT1A1 LTR MaLR 0 365 110 1224 154 5 5 chr1 116810600 116810814 -125853539 + MLT2B1 LTR ERVL 1 214 -306 2430 154 13 27 chr1 116810814 116811263 -125853090 + MSTB2 LTR MaLR 15 457 0 344 293 87 45 chr1 116811302 116811637 -125852716 + L1ME LINE L1 5476 5824 -297 537 126 0 11 chr1 116811643 116811724 -125852629 - Charlie1 DNA MER1_type 0 2761 2682 270 284 18 89 chr1 116811724 116811893 -125852460 + LTR16B LTR ERVL 1 157 -307 240 286 154 22 chr1 116811914 116812187 -125852166 + L1M4 LINE L1 3178 3486 -2660 307 308 140 63 chr1 116813105 116813598 -125850755 - L1M2 LINE L1 -5978 871 341 191 254 73 55 chr1 116814116 116814226 -125850127 + MIR SINE MIR 99 210 -52 1137 82 14 0 chr1 116814711 116814858 -125849495 - AluSg/x SINE Alu -8 304 156 762 215 289 9 chr1 116814917 116815287 -125849066 + L1ME1 LINE L1 5661 6117 -49 424 246 66 11 chr1 116815463 116815600 -125848753 + MER5A DNA MER1_type 6 136 -42 568 139 247 0 chr1 116815644 116815810 -125848543 + MER5C DNA MER1_type 52 258 -66 28035 110 11 51 chr1 116816448 116822916 -125841437 - L1PA7 LINE L1 -4 6150 12 290 87 22 0 chr1 116823438 116823484 -125840869 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 4224 218 94 15 chr1 116823598 116824720 -125839633 + L1MC4 LINE L1 6447 7657 -385 464 286 0 41 chr1 116826306 116826453 -125837900 - L2 LINE L2 -1 3312 3172 22 0 0 0 chr1 116828189 116828211 -125836142 + AT_rich Low_complexity Low_complexity 1 22 0 1720 181 33 3 chr1 116828385 116828688 -125835665 - AluJo SINE Alu 0 312 1 2214 143 76 0 chr1 116828691 116829098 -125835255 - L1MB3 LINE L1 -1 6182 5745 301 311 128 12 chr1 116830069 116830233 -125834120 - MIR SINE MIR -46 216 34 864 175 0 7 chr1 116830643 116830786 -125833567 + FRAM SINE Alu 10 151 -25 1948 147 3 0 chr1 116830925 116831210 -125833143 - AluSx SINE Alu -22 290 5 25 51 0 0 chr1 116831535 116831574 -125832779 + AT_rich Low_complexity Low_complexity 1 39 0 238 125 0 0 chr1 116831839 116831871 -125832482 + Tigger4(Zombi) DNA MER2_type 2 33 -2698 3432 242 51 2 chr1 116831872 116832708 -125831645 - L1M4 LINE L1 -1818 4564 3688 448 277 23 22 chr1 116832729 116832979 -125831374 - L1MCa LINE L1 -939 1804 1346 3141 89 19 23 chr1 116832979 116833408 -125830945 + L1PA11 LINE L1 5746 6172 -2 928 254 40 3 chr1 116833423 116833726 -125830627 + L1M4 LINE L1 4944 5257 -889 448 301 41 5 chr1 116833726 116833922 -125830431 + MLT2B1 LTR ERVL 1 203 -317 238 197 40 0 chr1 116834008 116834084 -125830269 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 251 225 0 14 chr1 116834134 116834205 -125830148 + L1MC5 LINE L1 7833 7902 -59 21 0 0 0 chr1 116835514 116835535 -125828818 + AT_rich Low_complexity Low_complexity 1 21 0 595 289 66 56 chr1 116835657 116836189 -125828164 + L1MC4 LINE L1 7098 7634 -408 278 306 17 40 chr1 116836199 116836372 -125827981 - L1MC4 LINE L1 -414 7628 7460 256 345 40 14 chr1 116837217 116837365 -125826988 - MIR3 SINE MIR -7 201 50 32 0 0 0 chr1 116837520 116837552 -125826801 + AT_rich Low_complexity Low_complexity 1 32 0 504 296 12 17 chr1 116838406 116838578 -125825775 + MER5B DNA MER1_type 7 177 -1 273 264 54 88 chr1 116841653 116841801 -125822552 - MIR SINE MIR -98 164 22 1563 201 27 0 chr1 116843518 116843812 -125820541 - AluJb SINE Alu -9 303 2 2958 137 94 14 chr1 116844292 116844780 -125819573 - MER1A DNA MER1_type -2 527 1 215 59 0 29 chr1 116847606 116847640 -125816713 + (GA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr1 116849935 116849963 -125814390 + AT_rich Low_complexity Low_complexity 1 28 0 1689 173 30 3 chr1 116851247 116851660 -125812693 - AluJb SINE Alu 0 421 1 21 0 0 0 chr1 116852388 116852409 -125811944 + AT_rich Low_complexity Low_complexity 1 21 0 214 324 63 78 chr1 116853553 116853695 -125810658 - MIR3 SINE MIR -67 141 2 263 224 30 0 chr1 116854322 116854389 -125809964 - MER4B-int LTR ERV1 -5540 1218 1150 216 163 0 0 chr1 116854392 116854435 -125809918 + (CA)n Simple_repeat Simple_repeat 2 44 0 409 196 25 38 chr1 116854753 116854884 -125809469 + L1MB5 LINE L1 6056 6184 0 251 333 17 25 chr1 116855371 116855491 -125808862 - MIR SINE MIR -116 146 28 538 252 7 14 chr1 116855774 116855921 -125808432 - MIR SINE MIR -21 241 96 447 68 0 0 chr1 116857922 116857981 -125806372 + (TA)n Simple_repeat Simple_repeat 1 59 0 255 299 39 13 chr1 116858468 116858545 -125805808 - MIR3 SINE MIR -48 160 82 24 0 0 0 chr1 116858621 116858645 -125805708 + AT_rich Low_complexity Low_complexity 1 24 0 288 298 135 7 chr1 116860355 116860496 -125803857 - MER5A DNA MER1_type -28 161 3 299 263 48 5 chr1 116860521 116860630 -125803723 - MIR SINE MIR -67 141 30 262 40 0 60 chr1 116860707 116860757 -125803596 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1078 172 84 23 chr1 116860852 116861067 -125803286 - AluJo SINE Alu -12 300 73 1104 283 87 18 chr1 116861072 116861627 -125802726 - L1M4 LINE L1 -1225 4921 4329 2842 254 73 16 chr1 116861645 116862580 -125801773 - L1ME1 LINE L1 -5 6161 5170 2536 248 42 45 chr1 116862644 116863676 -125800677 - L1ME1 LINE L1 -1286 4860 3833 1996 265 72 22 chr1 116863736 116863841 -125800512 - L1ME1 LINE L1 -4 6162 6064 1936 152 3 0 chr1 116863841 116864143 -125800210 + AluJo SINE Alu 1 303 -9 1996 265 72 22 chr1 116864143 116865026 -125799327 - L1ME1 LINE L1 -102 6064 5121 * 3246 201 35 19 chr1 116865020 116865887 -125798466 - L1P LINE L1 -2063 4083 3018 1175 228 14 66 chr1 116865935 116866456 -125797897 + L1PA16 LINE L1 4083 4542 -1604 389 211 0 0 chr1 116866434 116866505 -125797848 + L1PA16 LINE L1 5864 5934 -232 * 10071 181 38 13 chr1 116866507 116867094 -125797259 - L1M2 LINE L1 -551 5761 5190 2203 106 7 7 chr1 116867094 116867397 -125796956 - AluSq SINE Alu -10 303 1 10071 181 38 13 chr1 116867397 116869483 -125794870 - L1M2 LINE L1 -1122 5190 3020 286 131 49 0 chr1 116869485 116869546 -125794807 + CT-rich Low_complexity Low_complexity 3 66 0 558 299 71 27 chr1 116869949 116870392 -125793961 - L1 LINE L1 -1152 4994 4532 464 272 190 11 chr1 116870438 116870960 -125793393 - L1 LINE L1 -2348 3798 3184 1937 183 23 31 chr1 116871273 116871661 -125792692 + MSTB2 LTR MaLR 73 457 0 479 293 87 45 chr1 116871700 116872035 -125792318 + L1ME LINE L1 5476 5824 -297 580 126 0 11 chr1 116872041 116872122 -125792231 - Charlie1 DNA MER1_type 0 2761 2682 238 329 12 87 chr1 116872122 116872283 -125792070 + LTR16B LTR ERVL 1 149 -315 2901 131 8 4 chr1 116872494 116872975 -125791378 - L1P LINE L1 -2642 3504 3022 317 186 17 0 chr1 116872981 116873040 -125791313 - MER58 DNA MER1_type -117 98 39 1717 274 91 4 chr1 116873176 116873673 -125790680 + MLT1F LTR MaLR 2 541 -1 257 216 0 0 chr1 116873949 116874000 -125790353 + MER92A LTR ERV1 62 112 -300 308 306 53 24 chr1 116874043 116874213 -125790140 + L2 LINE L2 2197 2371 -943 288 279 73 15 chr1 116874385 116874521 -125789832 + L2 LINE L2 2397 2540 -774 385 227 62 0 chr1 116874521 116874618 -125789735 - L2 LINE L2 -3 3310 3208 1096 228 112 10 chr1 116874634 116874946 -125789407 - MLT2F LTR ERVL -2 661 318 507 343 111 21 chr1 116875247 116875716 -125788637 - L3 LINE CR1 -11 1566 1056 606 280 23 6 chr1 116876029 116876204 -125788149 - MER5B DNA MER1_type 0 178 1 187 255 106 0 chr1 116879096 116879143 -125785210 + L2 LINE L2 3004 3055 -217 316 289 264 26 chr1 116879188 116879744 -125784609 + L2 LINE L2 2551 3259 -13 252 342 125 48 chr1 116879892 116880307 -125784046 - L3 LINE CR1 -267 1310 864 180 257 37 59 chr1 116880319 116880455 -125783898 - L2 LINE L2 -560 2754 2622 30 45 0 0 chr1 116881558 116881602 -125782751 + AT_rich Low_complexity Low_complexity 1 44 0 522 234 40 8 chr1 116881710 116881834 -125782519 + MIR SINE MIR 56 183 -79 2117 146 53 3 chr1 116882123 116882465 -125781888 - MLT1A1 LTR MaLR -2 363 5 437 280 104 22 chr1 116883643 116883825 -125780528 - MIR SINE MIR -44 218 22 411 272 46 38 chr1 116883960 116884118 -125780235 + MIR SINE MIR 20 190 -63 2065 142 0 0 chr1 116884133 116884429 -125779924 + AluSx SINE Alu 1 296 -16 208 239 30 30 chr1 116885481 116885548 -125778805 - MIR SINE MIR -84 124 58 381 258 0 67 chr1 116885714 116885834 -125778519 + MIR SINE MIR 147 258 -4 450 355 30 22 chr1 116886351 116886582 -125777771 - L2 LINE L2 -212 3060 2828 1425 197 7 41 chr1 116886582 116886877 -125777476 + AluJo SINE Alu 1 285 -27 180 77 0 0 chr1 116886877 116886903 -125777450 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 351 226 66 28 chr1 116887245 116887351 -125777002 + MLT1L LTR MaLR 102 211 -404 232 306 0 0 chr1 116887450 116887512 -125776841 + MER112 DNA MER1_type 3 64 -196 2356 75 36 3 chr1 116887621 116887929 -125776424 - L1P4 LINE L1 -408 5760 5443 354 261 117 9 chr1 116888942 116889053 -125775300 - MIR SINE MIR -120 142 20 606 278 63 40 chr1 116889368 116889591 -125774762 + MIR SINE MIR 2 229 -33 254 348 116 0 chr1 116890654 116890766 -125773587 + L2 LINE L2 3148 3272 0 354 265 31 10 chr1 116890910 116891008 -125773345 + MLT1J LTR MaLR 88 187 -324 546 279 63 5 chr1 116891084 116891274 -125773079 + MLT1J2 LTR MaLR 247 447 -3 21 0 0 0 chr1 116891496 116891517 -125772836 + AT_rich Low_complexity Low_complexity 1 21 0 932 176 41 0 chr1 116892217 116892387 -125771966 + FAM SINE Alu 1 41 -8 180 0 0 0 chr1 116893061 116893081 -125771272 + (TA)n Simple_repeat Simple_repeat 2 21 0 342 0 0 0 chr1 116894486 116894524 -125769829 + (TG)n Simple_repeat Simple_repeat 2 39 0 831 242 45 33 chr1 116895683 116895927 -125768426 + MIR SINE MIR 14 260 -2 326 312 42 60 chr1 116896017 116896232 -125768121 + MIR SINE MIR 45 255 -7 660 290 108 13 chr1 116896242 116896473 -125767880 - MIR SINE MIR -3 259 7 24 0 0 0 chr1 116896528 116896552 -125767801 + AT_rich Low_complexity Low_complexity 1 24 0 442 321 119 62 chr1 116898012 116898414 -125765939 - L2 LINE L2 -19 3253 2829 387 331 22 22 chr1 116899141 116899322 -125765031 + MIR SINE MIR 34 214 -48 289 338 32 58 chr1 116899343 116899497 -125764856 + L2 LINE L2 2871 3020 -252 755 229 66 6 chr1 116899664 116899830 -125764523 - MER5A DNA MER1_type -13 176 1 355 276 147 29 chr1 116899913 116900083 -125764270 - L2 LINE L2 0 3313 3124 188 289 0 0 chr1 116900254 116900299 -125764054 - MIR SINE MIR -2 260 216 595 263 67 11 chr1 116900311 116900490 -125763863 + MIR SINE MIR 9 197 -65 3062 119 5 10 chr1 116900784 116901241 -125763112 - L1P5 LINE L1 -386 5765 5307 9459 119 14 20 chr1 116901241 116901985 -125762368 - L1PA8 LINE L1 -13 6159 5412 2517 64 0 10 chr1 116901985 116902297 -125762056 - AluY SINE Alu -2 309 1 9459 119 14 20 chr1 116902297 116903785 -125760568 - L1PA8 LINE L1 -760 5412 3950 3062 119 5 10 chr1 116903785 116903804 -125760549 - L1P5 LINE L1 -844 5307 5284 4085 24 7 0 chr1 116903804 116904254 -125760099 - L1PA3 LINE L1 -3 6152 5700 3062 119 5 10 chr1 116904254 116904266 -125760087 - L1P5 LINE L1 -867 5284 5273 * 15754 111 9 8 chr1 116904255 116906607 -125757746 - L1PA8 LINE L1 -2185 3961 1608 2951 201 22 15 chr1 116906607 116907294 -125757059 - L1 LINE L1 -815 5331 4640 * 5780 109 29 2 chr1 116907292 116907798 -125756555 + L1PB1 LINE L1 5264 5804 -347 198 0 0 0 chr1 116907798 116907820 -125756533 + (CA)n Simple_repeat Simple_repeat 2 23 0 5780 109 29 2 chr1 116907820 116908178 -125756175 + L1PB1 LINE L1 5804 6151 0 22 0 0 0 chr1 116908178 116908200 -125756153 + AT_rich Low_complexity Low_complexity 1 22 0 890 264 14 27 chr1 116908200 116908245 -125756108 - L1MEc LINE L1 -4494 1902 1858 1688 177 33 0 chr1 116908245 116908545 -125755808 - AluSx SINE Alu -2 310 1 890 264 14 27 chr1 116908545 116908791 -125755562 - L1MEc LINE L1 -4538 1858 1615 183 80 0 0 chr1 116908920 116908945 -125755408 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1019 215 23 9 chr1 116908947 116908961 -125755392 - L1 LINE L1 -3105 3041 3029 1882 143 0 7 chr1 116908961 116909241 -125755112 - AluSx SINE Alu -34 278 1 1019 215 23 9 chr1 116909241 116909514 -125754839 - L1 LINE L1 -3117 3029 2752 * 1616 239 71 58 chr1 116909511 116909536 -125754817 - L1M4 LINE L1 -1139 5007 4984 1802 149 41 9 chr1 116909536 116909851 -125754502 - L1MA4 LINE L1 -6 6294 5970 1616 239 71 58 chr1 116909851 116910081 -125754272 - L1M4 LINE L1 -1162 4984 4758 1839 126 69 4 chr1 116910081 116910358 -125753995 - AluSx SINE Alu -2 310 16 1616 239 71 58 chr1 116910358 116910805 -125753548 - L1M4 LINE L1 -1388 4758 4295 689 217 0 0 chr1 116911914 116912029 -125752324 + FLAM_C SINE Alu 1 115 -18 696 165 24 0 chr1 116913083 116913210 -125751143 + FLAM_C SINE Alu 1 130 -3 12465 181 18 47 chr1 116913870 116917365 -125746988 + L1P3 LINE L1 10 3421 -3040 8034 31 1 2 chr1 116917365 116918380 -125745973 + L1PA3 LINE L1 5142 6155 0 12465 181 18 47 chr1 116918380 116918573 -125745780 + L1P3 LINE L1 3421 3618 -2843 924 174 145 0 chr1 116918573 116918745 -125745608 - AluSx SINE Alu -115 197 1 982 256 62 27 chr1 116918745 116918838 -125745515 - L1M4 LINE L1 -2987 3159 3071 1217 185 62 0 chr1 116918838 116919049 -125745304 + MER58A DNA MER1_type 1 224 0 982 256 62 27 chr1 116919049 116919637 -125744716 - L1M4 LINE L1 -3075 3071 2373 323 263 108 54 chr1 116919920 116920236 -125744117 + L1MC5 LINE L1 7316 7648 -313 279 79 0 0 chr1 116920236 116920274 -125744079 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 510 195 0 0 chr1 116920278 116920360 -125743993 - FLAM_A SINE Alu -26 116 35 526 253 46 70 chr1 116920377 116920618 -125743735 + L1MC4 LINE L1 7768 8002 -40 623 323 101 58 chr1 116921075 116921877 -125742476 - L2 LINE L2 -41 3231 2376 26 0 0 0 chr1 116922124 116922150 -125742203 + AT_rich Low_complexity Low_complexity 1 26 0 2368 82 3 0 chr1 116922428 116922721 -125741632 + AluSp SINE Alu 1 294 -19 24 0 0 0 chr1 116923136 116923160 -125741193 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr1 116923783 116923823 -125740530 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr1 116924664 116924697 -125739656 + AT_rich Low_complexity Low_complexity 1 33 0 2453 65 0 10 chr1 116925835 116926145 -125738208 + AluSx SINE Alu 1 307 -5 23 0 0 0 chr1 116926542 116926565 -125737788 + AT_rich Low_complexity Low_complexity 1 23 0 10987 225 38 26 chr1 116926688 116929951 -125734402 - L1M LINE L1 -743 5403 2133 1767 119 4 0 chr1 116929974 116930218 -125734135 - AluSx SINE Alu -67 245 1 2900 232 34 10 chr1 116930218 116931049 -125733304 - L1 LINE L1 -2989 3361 2511 2849 3 0 0 chr1 116931091 116931398 -125732955 + AluYa5 SINE Alu 1 307 -4 3180 276 47 33 chr1 116931466 116932513 -125731840 - L1 LINE L1 -3945 2405 1639 2410 85 3 3 chr1 116932513 116932819 -125731534 - AluY SINE Alu -5 306 1 3180 276 47 33 chr1 116932819 116933909 -125730444 - L1 LINE L1 -4711 1639 566 377 321 16 16 chr1 116933971 116934155 -125730198 + L1M4 LINE L1 2636 2819 -3327 263 342 79 0 chr1 116934382 116934496 -125729857 - L2 LINE L2 -4 3309 3187 443 164 10 10 chr1 116934583 116934693 -125729660 - L1MDa LINE L1 -4594 1788 1574 2328 93 0 17 chr1 116934712 116935014 -125729339 + AluSq SINE Alu 1 297 -16 306 345 73 23 chr1 116935265 116935566 -125728787 - L1MDa LINE L1 -6044 519 204 199 156 0 0 chr1 116935911 116935943 -125728410 - L2 LINE L2 0 3313 3282 1956 172 40 8 chr1 116936023 116936418 -125727935 + L1MC3 LINE L1 7371 7778 -7 624 213 217 41 chr1 116937259 116937480 -125726873 + MIR SINE MIR 1 260 -2 709 305 14 26 chr1 116937873 116938226 -125726127 - L1M2 LINE L1 -561 5603 5254 21361 93 15 12 chr1 116938380 116938731 -125725622 + L1P3 LINE L1 2127 2475 -3697 7735 73 4 2 chr1 116938731 116939698 -125724655 - LTR5 LTR ERVK 0 969 1 21361 93 15 12 chr1 116939698 116943028 -125721325 + L1P3 LINE L1 2475 5820 -352 213 309 211 0 chr1 116944150 116944273 -125720080 + L2 LINE L2 3160 3308 -5 311 267 116 20 chr1 116944565 116944711 -125719642 - MLT1J LTR MaLR -20 491 332 554 309 94 9 chr1 116945222 116945455 -125718898 - L2 LINE L2 -2131 1183 931 337 242 79 6 chr1 116945456 116945634 -125718719 - L1M4 LINE L1 -804 5342 5152 21 0 0 0 chr1 116945695 116945716 -125718637 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr1 116948289 116948329 -125716024 + AT_rich Low_complexity Low_complexity 1 40 0 572 200 93 7 chr1 116948401 116948551 -125715802 - MIR SINE MIR -15 247 85 210 273 78 13 chr1 116948655 116948732 -125715621 - L2 LINE L2 -40 3232 3151 279 0 0 0 chr1 116948733 116948764 -125715589 + (TG)n Simple_repeat Simple_repeat 2 32 0 1355 258 85 49 chr1 116949263 116950639 -125713714 - L1ME3 LINE L1 -239 5923 4492 23 0 0 0 chr1 116950884 116950907 -125713446 + AT_rich Low_complexity Low_complexity 1 23 0 3525 246 99 28 chr1 116951096 116951310 -125713043 - L2 LINE L2 0 3313 3116 360 0 0 0 chr1 116951310 116951350 -125713003 + (TG)n Simple_repeat Simple_repeat 2 41 0 3525 246 99 28 chr1 116951350 116952625 -125711728 - L2 LINE L2 -197 3116 1712 2210 80 4 0 chr1 116952625 116952932 -125711421 + AluY SINE Alu 9 316 0 2846 66 0 0 chr1 116954490 116954855 -125709498 - L1PA8 LINE L1 -8 6164 5800 647 223 8 0 chr1 116954887 116955008 -125709345 + FLAM_A SINE Alu 1 122 -11 210 341 141 18 chr1 116955292 116955462 -125708891 - MIR SINE MIR -46 216 26 2143 104 3 19 chr1 116956143 116956452 -125707901 + AluSq SINE Alu 1 304 -9 408 156 65 0 chr1 116956556 116956633 -125707720 - MIR SINE MIR -87 175 94 1968 120 34 14 chr1 116956635 116956926 -125707427 - AluSx SINE Alu -12 300 4 636 306 73 5 chr1 116956955 116957174 -125707179 + MIR SINE MIR 3 236 -26 388 284 28 0 chr1 116957166 116957275 -125707078 + MIR SINE MIR 151 262 0 * 831 223 121 0 chr1 116958176 116958391 -125705962 + MIR SINE MIR 22 262 0 566 296 126 9 chr1 116958503 116958726 -125705627 - MIR SINE MIR -3 259 11 336 47 0 0 chr1 116958934 116958977 -125705376 + MADE1 DNA Mariner 1 43 -37 2071 144 3 0 chr1 116958981 116959279 -125705074 - AluSx SINE Alu -13 299 1 6268 92 3 12 chr1 116959290 116960840 -125703513 - L1PA10 LINE L1 -4 6164 4631 23 0 0 0 chr1 116961009 116961032 -125703321 + AT_rich Low_complexity Low_complexity 1 23 0 1267 96 0 16 chr1 116961232 116961419 -125702934 - MER11A LTR ERVK 0 1266 1083 207 20 0 118 chr1 116961425 116961476 -125702877 + (TTTTTA)n Simple_repeat Simple_repeat 2 46 0 13884 27 4 1 chr1 116961479 116963903 -125700450 - L1PA3 LINE L1 -3 6152 3724 613 319 44 10 chr1 116964136 116964546 -125699807 - L1M4 LINE L1 -1029 5117 4694 218 31 0 31 chr1 116964574 116964606 -125699747 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6456 63 28 0 chr1 116964609 116965822 -125698531 - L1PA8 LINE L1 -19 6153 4892 12759 99 1 0 chr1 116965822 116967636 -125696717 + L1PA8 LINE L1 3081 4896 -1250 1454 206 27 24 chr1 116967778 116968133 -125696220 - MLT1A1 LTR MaLR -7 358 1 2155 192 58 5 chr1 116968133 116968545 -125695808 - MLT1A1-int LTR MaLR 0 1735 1302 352 314 25 0 chr1 116968654 116968775 -125695578 - MLT1A1-int LTR MaLR -950 785 662 3129 206 17 15 chr1 116968944 116969599 -125694754 - MLT1A1-int LTR MaLR -1079 656 1 809 225 149 40 chr1 116969599 116969928 -125694425 - MLT1A1 LTR MaLR 0 365 1 692 344 58 31 chr1 116969928 116970483 -125693870 - L1M4 LINE L1 -1557 4589 4020 40 21 0 0 chr1 116970525 116970572 -125693781 + AT_rich Low_complexity Low_complexity 1 47 0 * 535 231 43 34 chr1 116970541 116970749 -125693604 - L1MB8 LINE L1 -13 6165 5956 738 224 32 6 chr1 116970836 116970992 -125693361 + MIR SINE MIR 2 161 -101 347 153 0 0 chr1 116970995 116971054 -125693299 + MER116 DNA Mariner 5 63 -17 * 487 178 11 0 chr1 116971045 116971135 -125693218 + MSTC LTR MaLR 264 354 -74 423 188 52 10 chr1 116971107 116971163 -125693190 + MLT2B3 LTR ERVL 455 518 -36 * 521 55 14 0 chr1 116971163 116971236 -125693117 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 423 188 52 10 chr1 116971236 116971275 -125693078 + MLT2B3 LTR ERVL 518 554 0 348 285 71 70 chr1 116971397 116971958 -125692395 - L1MEd LINE L1 -3180 3360 2799 25 0 0 0 chr1 116972141 116972166 -125692187 + AT_rich Low_complexity Low_complexity 1 25 0 357 353 49 40 chr1 116972188 116972335 -125692018 - HAL1 LINE L1 -753 1754 1603 2417 81 0 0 chr1 116972335 116972643 -125691710 - AluY SINE Alu -3 308 1 357 353 49 40 chr1 116972643 116972719 -125691634 - HAL1 LINE L1 -904 1603 1529 801 154 13 214 chr1 116972754 116973053 -125691300 + MER8 DNA MER2_type 1 239 0 1313 211 48 10 chr1 116973138 116973432 -125690921 + AluJb SINE Alu 1 305 -7 403 127 68 0 chr1 116973447 116973565 -125690788 + (TA)n Simple_repeat Simple_repeat 1 126 0 415 277 64 40 chr1 116973611 116973813 -125690540 - L1MEd LINE L1 -4892 1638 1432 238 193 108 0 chr1 116973836 116973919 -125690434 - L1MEd LINE L1 -5160 1380 1289 16893 196 47 30 chr1 116974085 116974823 -125689530 - L1PA15 LINE L1 -1 7602 6878 2679 85 8 0 chr1 116974823 116975175 -125689178 - THE1A LTR MaLR 0 355 1 11690 103 2 0 chr1 116975175 116976750 -125687603 - THE1A-int LTR MaLR 0 1580 2 2747 82 3 0 chr1 116976751 116977105 -125687248 - THE1A LTR MaLR 0 355 1 16893 196 47 30 chr1 116977105 116978825 -125685528 - L1PA15 LINE L1 -725 6878 5188 1705 174 0 56 chr1 116978825 116979129 -125685224 - AluJb SINE Alu -25 287 1 16893 196 47 30 chr1 116979129 116983725 -125680628 - L1PA15 LINE L1 -2415 5188 44 13678 148 127 74 chr1 116983724 116984899 -125679454 - L1 LINE L1 -3539 4026 2915 * 1180 84 0 0 chr1 116984899 116985053 -125679300 + AluY SINE Alu 150 303 -8 13678 148 127 74 chr1 116985053 116987109 -125677244 - L1 LINE L1 -4650 2915 414 1954 137 11 3 chr1 116987109 116987394 -125676959 + AluJb SINE Alu 1 287 -25 13678 148 127 74 chr1 116987394 116987821 -125676532 - L1 LINE L1 -7151 414 11 13530 29 1 1 chr1 116988980 116990707 -125673646 - L1P LINE L1 -2587 3559 1832 579 15 0 0 chr1 116990707 116990775 -125673578 + (TCTCCC)n Simple_repeat Simple_repeat 1 68 0 10110 32 9 131 chr1 116990775 116992291 -125672062 + SVA Other Other 57 1386 0 488 321 167 12 chr1 116992325 116992652 -125671701 - L2 LINE L2 -174 3139 2767 1992 33 12 8 chr1 116993432 116993674 -125670679 + AluY SINE Alu 67 309 -2 266 272 37 0 chr1 116994176 116994257 -125670096 - L2 LINE L2 -607 2707 2624 811 219 57 5 chr1 116994263 116994455 -125669898 + MIR SINE MIR 61 262 0 312 324 84 24 chr1 116994473 116994686 -125669667 - L2 LINE L2 -693 2621 2396 1819 157 13 17 chr1 116994748 116995048 -125669305 - AluJo SINE Alu -13 299 1 1850 171 3 0 chr1 116996720 116997006 -125667347 - AluJb SINE Alu -25 287 1 1546 249 69 39 chr1 116997308 116998067 -125666286 - L2 LINE L2 -18 3295 2528 2003 157 0 0 chr1 116998149 116998443 -125665910 - AluJb SINE Alu -18 294 1 672 328 92 3 chr1 116998963 116999323 -125665030 - HAL1 LINE L1 -609 1898 1507 1214 160 0 5 chr1 116999327 116999515 -125664838 + AluJo SINE Alu 1 187 -125 1190 127 15 0 chr1 116999623 116999820 -125664533 + L1MB1 LINE L1 5691 5890 -278 1073 138 71 0 chr1 116999834 117000030 -125664323 + L1MB1 LINE L1 5957 6166 -2 361 269 82 90 chr1 117000265 117000719 -125663634 - HAL1 LINE L1 -1241 1266 817 398 254 102 5 chr1 117001025 117001184 -125663169 - MLT1J1 LTR MaLR -215 235 63 342 0 0 0 chr1 117001459 117001497 -125662856 + (T)n Simple_repeat Simple_repeat 1 38 0 228 204 0 0 chr1 117002027 117002071 -125662282 - Alu SINE Alu -4 129 86 2778 165 40 29 chr1 117002108 117002704 -125661649 + L1PB4 LINE L1 4634 5238 -918 2410 128 5 8 chr1 117002704 117003080 -125661273 + THE1C LTR MaLR 1 375 0 2778 165 40 29 chr1 117003080 117003651 -125660702 + L1PB4 LINE L1 5238 5801 -355 480 118 2 90 chr1 117003651 117004169 -125660184 + (TA)n Simple_repeat Simple_repeat 1 472 0 478 89 0 70 chr1 117004234 117004384 -125659969 + (TA)n Simple_repeat Simple_repeat 1 141 -5 1752 165 50 3 chr1 117004384 117004748 -125659605 + L1PB4 LINE L1 5776 6156 0 478 89 0 70 chr1 117004748 117004754 -125659599 + (TA)n Simple_repeat Simple_repeat 141 146 0 32 43 0 0 chr1 117005806 117005852 -125658501 + AT_rich Low_complexity Low_complexity 1 46 0 855 161 86 0 chr1 117005991 117006165 -125658188 + MLT1C LTR MaLR 6 194 -273 11582 127 10 51 chr1 117006176 117008959 -125655394 + L1P3 LINE L1 8 2788 -3673 7977 70 3 2 chr1 117008959 117009927 -125654426 - LTR5 LTR ERVK 0 969 1 11582 127 10 51 chr1 117009927 117009950 -125654403 + L1P3 LINE L1 2788 2810 -3651 354 285 105 17 chr1 117010708 117010880 -125653473 - L2 LINE L2 -1 3312 3126 236 369 71 0 chr1 117011352 117011436 -125652917 - L2 LINE L2 -28 3244 3155 261 366 8 8 chr1 117011633 117011756 -125652597 + GA-rich Low_complexity Low_complexity 4 126 0 325 238 81 50 chr1 117012404 117012493 -125651860 - L1ME4a LINE L1 -1 6120 6022 1718 139 68 81 chr1 117012493 117012888 -125651465 - MLT1B LTR MaLR 0 390 1 325 238 81 50 chr1 117012888 117012958 -125651395 - L1ME4a LINE L1 -99 6022 5956 259 302 31 49 chr1 117014242 117014469 -125649884 - L2 LINE L2 -1 3312 3118 * 1658 232 158 16 chr1 117014462 117015019 -125649334 - L2 LINE L2 -1482 1832 1197 344 305 19 0 chr1 117015076 117015181 -125649172 - L2 LINE L2 -15 3298 3192 2023 159 0 19 chr1 117015236 117015551 -125648802 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr1 117016015 117016036 -125648317 + AT_rich Low_complexity Low_complexity 1 21 0 1255 315 41 4 chr1 117016549 117017032 -125647321 - MLT1J LTR MaLR -9 502 2 360 328 67 0 chr1 117017167 117017286 -125647067 - MIR3 SINE MIR -52 156 30 836 248 53 53 chr1 117017455 117017681 -125646672 + MIR SINE MIR 5 230 -32 2766 199 51 0 chr1 117017912 117018445 -125645908 - MER68 LTR ERV1 -2 560 1 29 47 0 0 chr1 117018557 117018600 -125645753 + AT_rich Low_complexity Low_complexity 1 43 0 8547 182 40 38 chr1 117018619 117021640 -125642713 - L1MA9 LINE L1 -7 6541 3529 2173 108 3 3 chr1 117021640 117021947 -125642406 - AluY SINE Alu -4 307 1 2268 94 0 3 chr1 117021951 117022249 -125642104 - AluSx SINE Alu -15 297 1 8547 182 40 38 chr1 117022249 117022674 -125641679 - L1MA9 LINE L1 -3021 3527 3105 2399 85 3 3 chr1 117022674 117022981 -125641372 + AluSq SINE Alu 1 307 -6 8547 182 40 38 chr1 117022981 117023640 -125640713 - L1MA9 LINE L1 -3443 3105 2449 1675 152 59 21 chr1 117023640 117023930 -125640423 + AluJo SINE Alu 1 301 -11 8547 182 40 38 chr1 117023930 117024392 -125639961 - L1MA9 LINE L1 -4099 2449 1990 6222 76 0 19 chr1 117024392 117025376 -125638977 - L1PA13 LINE L1 -1 6162 5191 8547 182 40 38 chr1 117025376 117026221 -125638132 - L1MA9 LINE L1 -4558 1990 1113 870 285 35 21 chr1 117026203 117026783 -125637570 - L1M3c LINE L1 -4945 2153 1545 * 524 299 115 45 chr1 117026943 117027344 -125637009 - L1M3c LINE L1 -6730 438 10 765 334 129 8 chr1 117027344 117027724 -125636629 + L2 LINE L2 2535 2960 -354 1281 313 8 5 chr1 117027968 117028355 -125635998 + LTR16C LTR ERVL 37 424 -67 2336 189 37 13 chr1 117028373 117028834 -125635519 - MER70A LTR ERVL 0 472 1 313 167 0 0 chr1 117028841 117028901 -125635452 + Tigger1 DNA MER2_type 188 247 -2171 261 301 9 35 chr1 117029569 117029682 -125634671 - MLT1J LTR MaLR -298 213 104 21 57 0 0 chr1 117030270 117030305 -125634048 + AT_rich Low_complexity Low_complexity 1 35 0 1081 167 6 0 chr1 117030621 117030783 -125633570 + AluSx SINE Alu 1 163 -149 189 0 0 0 chr1 117030875 117030896 -125633457 + (ATTG)n Simple_repeat Simple_repeat 3 23 0 355 329 56 31 chr1 117030906 117031067 -125633286 - L2 LINE L2 0 3272 3108 1694 168 11 15 chr1 117031167 117031441 -125632912 + AluJb SINE Alu 1 273 -39 444 222 9 37 chr1 117033272 117033380 -125630973 - MER5B DNA MER1_type 0 178 74 873 168 0 0 chr1 117033385 117033522 -125630831 + AluJb SINE Alu 5 141 -171 25 31 0 0 chr1 117033539 117033571 -125630782 + AT_rich Low_complexity Low_complexity 1 32 0 218 338 39 0 chr1 117033571 117033648 -125630705 - MER5B DNA MER1_type -92 86 7 216 167 37 0 chr1 117034597 117034651 -125629702 + A-rich Low_complexity Low_complexity 1 56 0 2241 72 38 3 chr1 117034737 117035056 -125629297 + AluY SINE Alu 1 311 0 24 77 0 0 chr1 117035334 117035386 -125628967 + AT_rich Low_complexity Low_complexity 1 52 0 977 204 35 5 chr1 117036074 117036275 -125628078 + MER3 DNA MER1_type 2 208 -1 24 32 0 0 chr1 117036355 117036386 -125627967 + AT_rich Low_complexity Low_complexity 1 31 0 36 82 0 0 chr1 117036691 117036776 -125627577 + AT_rich Low_complexity Low_complexity 1 85 0 21 0 0 0 chr1 117037332 117037353 -125627000 + AT_rich Low_complexity Low_complexity 1 21 0 1602 185 17 20 chr1 117038203 117038500 -125625853 + AluJo SINE Alu 1 296 -16 422 267 68 7 chr1 117038665 117038811 -125625542 - MIR SINE MIR -6 256 102 971 201 102 40 chr1 117039948 117039996 -125624357 - MSTD LTR MaLR 0 396 352 2120 113 0 0 chr1 117039996 117040312 -125624041 - AluSg SINE Alu 0 316 1 971 201 102 40 chr1 117040312 117040536 -125623817 - MSTD LTR MaLR -44 352 106 563 237 31 0 chr1 117040536 117040730 -125623623 + L1M4 LINE L1 4963 5162 -984 1755 274 52 3 chr1 117040768 117041457 -125622896 + L1PA15 LINE L1 2788 3510 -2636 802 106 0 0 chr1 117041458 117041562 -125622791 + AluY SINE Alu 2 105 -206 970 191 10 0 chr1 117041562 117041761 -125622592 - L1PA15-16 LINE L1 -4083 2766 2566 4944 134 26 43 chr1 117041793 117043848 -125620505 + L1PA15 LINE L1 4124 6162 -3 212 196 0 18 chr1 117043967 117044023 -125620330 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 67 0 0 chr1 117044149 117044194 -125620159 + AT_rich Low_complexity Low_complexity 1 45 0 1455 209 47 44 chr1 117044361 117044623 -125619730 + L1M4 LINE L1 5346 5611 -573 2495 47 0 44 chr1 117044623 117044944 -125619409 + AluY SINE Alu 1 307 -4 1455 209 47 44 chr1 117044944 117045131 -125619222 + L1M4 LINE L1 5611 5796 -388 1218 134 15 0 chr1 117045246 117045447 -125618906 - L1MA7 LINE L1 -301 5990 5787 288 0 0 0 chr1 117045479 117045511 -125618842 + (CA)n Simple_repeat Simple_repeat 2 33 0 1504 170 11 22 chr1 117045763 117046034 -125618319 - AluSx SINE Alu -24 288 21 326 233 81 41 chr1 117046731 117046903 -125617450 + HAL1 LINE L1 1012 1190 -1317 1748 176 0 33 chr1 117046908 117047209 -125617144 + AluJb SINE Alu 1 291 -21 2335 214 4 33 chr1 117047233 117047453 -125616900 + MLT2B3 LTR ERVL 1 226 -328 267 31 0 0 chr1 117047453 117047485 -125616868 + (TCTCTG)n Simple_repeat Simple_repeat 4 35 0 2335 214 4 33 chr1 117047485 117047779 -125616574 + MLT2B3 LTR ERVL 226 500 -54 326 233 81 41 chr1 117048009 117048181 -125616172 + HAL1 LINE L1 1012 1190 -1317 1124 188 0 47 chr1 117048186 117048399 -125615954 + AluJo SINE Alu 1 203 -109 271 30 0 0 chr1 117048410 117048443 -125615910 + MLT2B3 LTR ERVL 483 515 0 683 282 69 19 chr1 117048493 117048869 -125615484 + HAL1 LINE L1 1258 1652 -855 274 171 34 114 chr1 117049005 117049040 -125615313 - MER94 DNA DNA -51 83 47 2267 89 0 7 chr1 117049040 117049344 -125615009 - AluSx SINE Alu -10 302 1 274 171 34 114 chr1 117049344 117049396 -125614957 - MER94 DNA DNA -87 47 3 264 107 36 36 chr1 117049434 117049490 -125614863 + HAL1 LINE L1 142 197 -2310 239 287 40 30 chr1 117049629 117049730 -125614623 + HAL1 LINE L1 528 629 -1878 182 451 52 7 chr1 117050132 117050285 -125614068 + L2 LINE L2 3073 3232 -40 3584 134 66 16 chr1 117050410 117051182 -125613171 + MER11B LTR ERVK 5 910 -326 7723 63 0 7 chr1 117051202 117052238 -125612115 + L1P LINE L1 3 1031 -5115 218 301 24 12 chr1 117052344 117052427 -125611926 + (CGG)n Simple_repeat Simple_repeat 1 84 0 5900 56 19 1 chr1 117052549 117053302 -125611051 + L1PA8 LINE L1 5401 6166 -6 1240 201 61 0 chr1 117053304 117053567 -125610786 + MLT1C LTR MaLR 189 467 0 1575 186 31 31 chr1 117053687 117054047 -125610306 + MLT1A1 LTR MaLR 6 365 0 383 296 56 0 chr1 117054126 117054234 -125610119 - L2 LINE L2 -16 3297 3184 333 375 76 19 chr1 117054769 117055033 -125609320 - L2 LINE L2 -527 2787 2509 846 151 0 14 chr1 117055109 117055248 -125609105 - FLAM_C SINE Alu -6 137 1 693 308 99 35 chr1 117055248 117055764 -125608589 + MLT1L LTR MaLR 57 605 -10 917 137 0 0 chr1 117055827 117055958 -125608395 + FLAM_C SINE Alu 1 131 -2 262 225 150 38 chr1 117057157 117057237 -125607116 + MIR SINE MIR 174 262 0 1102 253 65 50 chr1 117057537 117057717 -125606636 + L2 LINE L2 1689 1865 -1449 1659 184 3 46 chr1 117057717 117058043 -125606310 - AluJo SINE Alu 0 312 1 1102 253 65 50 chr1 117058043 117058265 -125606088 + L2 LINE L2 1865 2097 -1217 283 250 48 10 chr1 117058277 117058381 -125605972 + MLT1J LTR MaLR 1 108 -403 315 320 262 4 chr1 117058393 117058668 -125605685 + L2 LINE L2 2577 2922 -392 431 268 160 15 chr1 117058675 117058944 -125605409 - L1MEd LINE L1 -4866 1253 946 325 267 73 39 chr1 117058946 117059188 -125605165 - L1MEd LINE L1 -5158 961 702 284 304 10 0 chr1 117059668 117059770 -125604583 - L1MEd LINE L1 -5956 163 61 1241 189 107 105 chr1 117059809 117059902 -125604451 + MLT1C LTR MaLR 1 92 -375 1789 176 21 0 chr1 117059902 117060192 -125604161 - AluJb SINE Alu -16 296 1 1241 189 107 105 chr1 117060192 117060564 -125603789 + MLT1C LTR MaLR 92 467 0 416 249 113 122 chr1 117060565 117060910 -125603443 + L2 LINE L2 2931 3272 -41 493 254 113 25 chr1 117060924 117061164 -125603189 - L1MC/D LINE L1 -2294 5514 5254 31 76 0 0 chr1 117061276 117061342 -125603011 + AT_rich Low_complexity Low_complexity 1 66 0 288 137 0 0 chr1 117061480 117061531 -125602822 + (CA)n Simple_repeat Simple_repeat 2 52 0 636 275 133 0 chr1 117061619 117061830 -125602523 + MIR SINE MIR 20 258 -4 21 0 0 0 chr1 117061907 117061928 -125602425 + AT_rich Low_complexity Low_complexity 1 21 0 274 271 104 49 chr1 117062481 117062625 -125601728 - L2 LINE L2 0 3313 3162 356 291 150 47 chr1 117062698 117062790 -125601563 - MIR SINE MIR 0 262 181 1961 101 7 22 chr1 117062790 117063067 -125601286 - AluSx SINE Alu -26 286 14 356 291 150 47 chr1 117063067 117063187 -125601166 - MIR SINE MIR -81 181 28 238 182 0 0 chr1 117063227 117063271 -125601082 + L2 LINE L2 2914 2957 -315 1704 191 3 0 chr1 117063600 117063882 -125600471 - AluJb SINE Alu -5 307 25 360 192 7 0 chr1 117063882 117063954 -125600399 - AluJ/FLAM SINE Alu -240 62 3 2073 133 3 10 chr1 117064431 117064740 -125599613 - AluSx SINE Alu -5 307 1 463 286 148 0 chr1 117064993 117065196 -125599157 + HAL1 LINE L1 9 241 -2266 1161 249 109 49 chr1 117065286 117065763 -125598590 + HAL1 LINE L1 413 939 -1568 1744 165 40 0 chr1 117065763 117066060 -125598293 + AluJo SINE Alu 1 309 -3 1161 249 109 49 chr1 117066060 117066212 -125598141 + HAL1 LINE L1 939 1080 -1427 526 281 133 5 chr1 117066213 117066409 -125597944 + LTR33 LTR ERVL 1 221 -300 237 173 62 37 chr1 117066432 117066513 -125597840 + HAL1 LINE L1 2425 2507 0 5845 197 12 30 chr1 117066901 117067912 -125596441 + HERVFH21 LTR ERV1 578 1496 -5013 2441 62 0 19 chr1 117067912 117068221 -125596132 - AluY SINE Alu -8 303 1 5845 197 12 30 chr1 117068221 117068600 -125595753 + HERVFH21 LTR ERV1 1496 1880 -4629 2629 43 0 0 chr1 117068811 117069110 -125595243 - AluY SINE Alu -12 299 1 230 308 9 9 chr1 117069743 117069850 -125594503 + CT-rich Low_complexity Low_complexity 47 153 0 278 324 23 17 chr1 117069884 117070060 -125594293 + CT-rich Low_complexity Low_complexity 2 178 0 1244 184 128 15 chr1 117072217 117072483 -125591870 - AluJo SINE Alu -16 296 1 198 103 0 0 chr1 117074615 117074644 -125589709 + (CAA)n Simple_repeat Simple_repeat 2 30 0 213 203 31 16 chr1 117076785 117076849 -125587504 + (CTG)n Simple_repeat Simple_repeat 3 67 0 186 133 0 0 chr1 117076892 117076922 -125587431 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 264 296 87 17 chr1 117077622 117077737 -125586616 + MIR SINE MIR 118 240 -22 189 234 143 13 chr1 117078503 117078580 -125585773 - MIR SINE MIR -35 227 141 433 226 61 61 chr1 117078580 117078650 -125585703 - L1MA10 LINE L1 -1 6333 6264 678 226 164 37 chr1 117078650 117078973 -125585380 - L1ME1 LINE L1 -57 6109 5746 369 109 0 0 chr1 117079065 117079120 -125585233 - Alu SINE Alu -2 300 246 1103 125 0 0 chr1 117079120 117079272 -125585081 + MER84-int LTR ERV1 4802 4953 -1 3421 108 29 2 chr1 117079277 117079766 -125584587 + MER84 LTR ERVI 6 507 0 2269 217 40 44 chr1 117079768 117079882 -125584471 - L1ME1 LINE L1 -576 5590 5477 1437 198 24 3 chr1 117079882 117080170 -125584183 + AluJo SINE Alu 1 294 -18 2269 217 40 44 chr1 117080170 117080459 -125583894 - L1ME1 LINE L1 -689 5477 5188 1903 155 3 3 chr1 117080459 117080749 -125583604 - AluJo SINE Alu -16 296 7 2269 217 40 44 chr1 117080749 117081295 -125583058 - L1ME1 LINE L1 -978 5188 4653 265 324 37 22 chr1 117081567 117081703 -125582650 - L2 LINE L2 -233 3039 2902 2106 113 0 56 chr1 117081766 117082086 -125582267 + AluSx SINE Alu 1 302 -10 240 280 50 20 chr1 117082151 117082251 -125582102 + L2 LINE L2 3164 3266 -6 1934 154 0 3 chr1 117082817 117083109 -125581244 - AluSq SINE Alu -22 291 1 2447 82 0 7 chr1 117083110 117083415 -125580938 - AluSq SINE Alu -10 303 1 635 242 141 44 chr1 117084081 117084329 -125580024 + Charlie2 DNA MER1_type 61 332 -2530 * 1658 206 95 53 chr1 117084322 117084443 -125579910 + Charlie2 DNA MER1_type 1876 1990 -872 1411 169 115 15 chr1 117084443 117084704 -125579649 - AluJb SINE Alu -25 287 1 1658 206 95 53 chr1 117084704 117085204 -125579149 + Charlie2 DNA MER1_type 1990 2523 -339 358 221 87 10 chr1 117085376 117085480 -125578873 - L1MC/D LINE L1 -2349 5459 5348 852 268 121 20 chr1 117085489 117085717 -125578636 + HAL1 LINE L1 137 413 -2094 2492 78 0 10 chr1 117085717 117086024 -125578329 + AluSg SINE Alu 1 304 -6 852 268 121 20 chr1 117086024 117086142 -125578211 + HAL1 LINE L1 413 518 -1989 186 223 117 48 chr1 117086934 117087037 -125577316 + MIR3 SINE MIR 49 158 -50 3695 68 56 0 chr1 117087290 117087776 -125576577 - LTR10D LTR ERV1 0 513 1 784 86 33 79 chr1 117087933 117087960 -125576393 + L1M LINE L1 5254 5281 -2504 2279 83 14 0 chr1 117087960 117088248 -125576105 - AluSc SINE Alu -17 292 1 784 86 33 79 chr1 117088248 117088372 -125575981 + L1M LINE L1 5281 5398 -2387 352 115 0 0 chr1 117088373 117088425 -125575928 + FRAM/FAM SINE Alu 1 51 -115 239 179 0 154 chr1 117088707 117088740 -125575613 - LTR37B LTR ERV1 -397 71 35 2317 78 0 0 chr1 117088740 117089063 -125575290 - AluY SINE Alu 0 323 1 239 179 0 154 chr1 117089063 117089091 -125575262 - LTR37B LTR ERV1 -433 35 20 1886 167 0 16 chr1 117089091 117089396 -125574957 - AluJb SINE Alu -12 300 1 239 179 0 154 chr1 117089396 117089410 -125574943 - LTR37B LTR ERV1 -448 20 6 319 115 19 19 chr1 117089434 117089486 -125574867 + MER75 DNA T2_type 453 504 0 1317 162 116 61 chr1 117089812 117089958 -125574395 + MER2 DNA MER2_type 1 138 -207 782 154 23 0 chr1 117089958 117090088 -125574265 - FLAM_C SINE Alu 0 133 1 1317 162 116 61 chr1 117090088 117090268 -125574085 + MER2 DNA MER2_type 138 345 0 240 287 157 19 chr1 117090476 117090584 -125573769 + MIR SINE MIR 21 143 -119 593 146 0 0 chr1 117090594 117090683 -125573670 + FRAM/FAM SINE Alu 1 89 -96 1199 184 159 62 chr1 117090699 117091115 -125573238 + LTR56 LTR ERV1 9 437 0 1773 161 0 34 chr1 117091138 117091454 -125572899 + AluJb SINE Alu 1 306 0 348 221 0 0 chr1 117091454 117091522 -125572831 + FAM SINE Alu 106 173 -2 195 308 47 28 chr1 117091523 117091630 -125572723 + MIR SINE MIR 150 258 -4 714 143 24 32 chr1 117091636 117091762 -125572591 + FLAM_A SINE Alu 1 125 -8 1208 127 51 15 chr1 117091869 117092066 -125572287 - MER46B DNA MER2_type 0 236 33 1202 100 11 6 chr1 117092071 117092214 -125572139 - L1MA2 LINE L1 0 6304 6163 339 25 0 0 chr1 117092214 117092254 -125572099 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2041 145 0 0 chr1 117092254 117092536 -125571817 - AluSx SINE Alu -30 282 1 1202 100 11 6 chr1 117092536 117092571 -125571782 - L1MA2 LINE L1 -140 6164 6124 496 134 37 0 chr1 117092571 117092653 -125571700 - L1 LINE L1 -2567 4998 4914 845 11 0 0 chr1 117092660 117092751 -125571602 - LTR2B LTR ERV1 -42 448 358 216 0 0 0 chr1 117092751 117092775 -125571578 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 9837 29 10 180 chr1 117092775 117094378 -125569975 - SVA Other Other -19 1367 38 321 47 0 0 chr1 117094383 117094426 -125569927 + (GGGAGA)n Simple_repeat Simple_repeat 1 43 0 21709 149 48 10 chr1 117094427 117094974 -125569379 - L1 LINE L1 -2640 4925 4401 2373 96 0 10 chr1 117094974 117095288 -125569065 - AluY SINE Alu 0 311 1 21709 149 48 10 chr1 117095288 117099470 -125564883 - L1 LINE L1 -3164 4401 22 964 126 102 6 chr1 117099474 117099641 -125564712 - MER46B DNA MER2_type -178 58 1 271 308 52 87 chr1 117099674 117099846 -125564507 + LTR67 LTR ERVL 35 200 -357 728 191 0 30 chr1 117099846 117099977 -125564376 + FLAM_A SINE Alu 1 127 -6 371 187 73 89 chr1 117099987 117100041 -125564312 + LTR67 LTR ERVL 437 490 -67 2066 137 7 0 chr1 117100041 117100333 -125564020 + AluSq SINE Alu 1 294 -19 371 187 73 89 chr1 117100333 117100401 -125563952 + LTR67 LTR ERVL 490 557 0 406 196 0 13 chr1 117100413 117100556 -125563797 + CT-rich Low_complexity Low_complexity 1 141 0 963 190 62 20 chr1 117100557 117100752 -125563601 - AluJo SINE Alu -15 297 95 4731 110 110 125 chr1 117100753 117102181 -125562172 - pTR5 LTR ERV1 0 2438 741 579 179 0 0 chr1 117102182 117102277 -125562076 - AluJo SINE Alu -216 96 2 264 214 58 78 chr1 117102413 117102516 -125561837 - MIR SINE MIR -55 207 107 1324 145 53 4 chr1 117102584 117102811 -125561542 - MSTB1 LTR MaLR 0 432 195 391 197 0 0 chr1 117102810 117102876 -125561477 - MSTB1 LTR MaLR -363 69 4 * 1936 135 33 119 chr1 117103154 117103607 -125560746 + MLT2D LTR ERVL 1 414 0 538 144 11 0 chr1 117103672 117103762 -125560591 - MER69 DNA AcHobo -3 2523 2433 * 787 227 164 14 chr1 117103759 117103979 -125560374 - MER69 DNA AcHobo -1935 591 339 689 153 57 16 chr1 117104048 117104172 -125560181 - FLAM_C SINE Alu -3 130 2 700 170 0 0 chr1 117104428 117104540 -125559813 - MLT1B LTR MaLR -2 388 277 277 302 38 19 chr1 117104532 117104638 -125559715 - LTR16C LTR ERVL -251 240 133 * 630 225 67 67 chr1 117104644 117104987 -125559366 - MLT1G1 LTR MaLR -170 422 86 2332 99 0 0 chr1 117105156 117105450 -125558903 + AluSx SINE Alu 2 295 -17 2032 146 3 13 chr1 117106604 117106919 -125557434 - AluSx SINE Alu 0 312 1 260 336 72 24 chr1 117107224 117107349 -125557004 - L2 LINE L2 -1 3271 3141 189 308 60 60 chr1 117107446 117107563 -125556790 - MIR SINE MIR -118 144 28 358 256 11 0 chr1 117109014 117109104 -125555249 - MIR SINE MIR -112 150 60 24 32 0 0 chr1 117109150 117109181 -125555172 + AT_rich Low_complexity Low_complexity 1 31 0 2109 152 0 0 chr1 117109181 117109490 -125554863 - AluSx SINE Alu -3 309 1 198 0 0 0 chr1 117109502 117109524 -125554829 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1992 152 0 0 chr1 117109524 117109811 -125554542 - AluJb SINE Alu -15 297 8 651 280 29 11 chr1 117110379 117110554 -125553799 - MER5B DNA MER1_type 0 178 1 658 260 76 3 chr1 117110939 117111149 -125553204 + MIR SINE MIR 36 256 -6 2480 70 0 0 chr1 117112577 117112875 -125551478 - AluY SINE Alu -13 298 1 2109 150 160 10 chr1 117113126 117113532 -125550821 + MLT1C LTR MaLR 1 467 0 228 319 14 0 chr1 117113775 117113844 -125550509 + L2 LINE L2 3227 3296 -17 191 176 39 0 chr1 117113865 117113916 -125550437 + GA-rich Low_complexity Low_complexity 4 56 0 297 51 0 0 chr1 117114278 117114317 -125550036 + (TC)n Simple_repeat Simple_repeat 1 39 0 255 275 100 42 chr1 117114525 117114645 -125549708 + L2 LINE L2 3187 3313 0 22 35 0 0 chr1 117114868 117114897 -125549456 + AT_rich Low_complexity Low_complexity 1 29 0 285 29 0 0 chr1 117117686 117117720 -125546633 + (CA)n Simple_repeat Simple_repeat 2 35 0 298 317 68 19 chr1 117118118 117118279 -125546074 + MIR SINE MIR 20 188 -74 201 274 0 16 chr1 117118280 117118342 -125546011 + MIR SINE MIR 156 216 -46 207 0 0 0 chr1 117118343 117118366 -125545987 + (TG)n Simple_repeat Simple_repeat 1 23 0 2312 59 55 3 chr1 117119142 117119432 -125544921 + AluY SINE Alu 1 305 -6 753 164 0 0 chr1 117119527 117119643 -125544710 - FLAM_C SINE Alu -26 117 2 24 32 0 0 chr1 117119770 117119801 -125544552 + AT_rich Low_complexity Low_complexity 1 31 0 225 351 0 26 chr1 117120322 117120399 -125543954 + L2 LINE L2 3182 3256 -16 830 128 15 15 chr1 117121704 117121837 -125542516 - FLAM_A SINE Alu 0 133 1 2687 205 80 33 chr1 117122088 117122761 -125541592 + L1ME1 LINE L1 4726 5365 -801 2063 153 0 0 chr1 117122761 117123061 -125541292 - AluJb SINE Alu -12 300 1 2687 205 80 33 chr1 117123061 117123120 -125541233 + L1ME1 LINE L1 5365 5420 -746 1705 178 3 11 chr1 117123120 117123433 -125540920 + AluJb SINE Alu 1 311 0 2687 205 80 33 chr1 117123433 117124066 -125540287 + L1ME1 LINE L1 5420 6161 -5 709 294 161 6 chr1 117124192 117124522 -125539831 - L2 LINE L2 -22 3291 2911 546 286 53 5 chr1 117124539 117124728 -125539625 + LTR16A LTR ERVL 52 249 -201 263 250 15 0 chr1 117124761 117124829 -125539524 + MER96 DNA MER1_type? 21 89 -86 1859 246 36 58 chr1 117124888 117125607 -125538746 - L2 LINE L2 -2133 1181 479 760 278 74 26 chr1 117126194 117126464 -125537889 - MLT1J LTR MaLR -3 508 226 1395 148 9 17 chr1 117126611 117126841 -125537512 + AluJb SINE Alu 1 228 -84 1842 168 28 0 chr1 117127122 117127407 -125536946 + AluJb SINE Alu 1 293 -19 884 233 102 95 chr1 117127939 117128149 -125536204 - LTR41 LTR ERVL 0 766 559 1597 186 9 25 chr1 117128149 117128466 -125535887 + AluJo SINE Alu 1 312 0 884 233 102 95 chr1 117128466 117129024 -125535329 - LTR41 LTR ERVL -207 559 1 1834 128 0 21 chr1 117130343 117130498 -125533855 - AluSx SINE Alu -25 287 139 2306 114 0 0 chr1 117130498 117130804 -125533549 - AluSg SINE Alu -4 306 1 1834 128 0 21 chr1 117130804 117130936 -125533417 - AluSx SINE Alu -173 139 6 1357 106 53 0 chr1 117131249 117131456 -125532897 - L1PA7 LINE L1 -3 6151 5934 1811 156 10 0 chr1 117131624 117131919 -125532434 + AluJb SINE Alu 6 303 -9 1005 149 46 23 chr1 117132492 117132667 -125531686 - AluJo SINE Alu -5 307 129 455 175 105 9 chr1 117132668 117132782 -125531571 - L1MB3 LINE L1 -58 6125 6001 846 147 0 16 chr1 117132793 117132922 -125531431 - AluJo SINE Alu -185 127 1 1631 158 26 4 chr1 117132938 117133203 -125531150 - AluJo SINE Alu -41 271 1 1019 135 0 0 chr1 117133210 117133358 -125530995 - AluSp/q SINE Alu -9 304 157 289 399 0 0 chr1 117134165 117134343 -125530010 + C-rich Low_complexity Low_complexity 1 178 0 263 297 6 55 chr1 117134303 117134468 -125529885 + CT-rich Low_complexity Low_complexity 5 161 0 * 204 318 16 0 chr1 117134479 117134542 -125529811 + C-rich Low_complexity Low_complexity 5 68 0 2618 65 0 0 chr1 117134655 117134965 -125529388 + AluY SINE Alu 1 310 -1 196 347 10 10 chr1 117136484 117136582 -125527771 + MIR SINE MIR 35 132 -76 188 239 0 22 chr1 117138079 117138125 -125526228 - L2 LINE L2 -79 3234 3190 454 272 78 23 chr1 117138176 117138393 -125525960 - MIR SINE MIR -1 261 33 1899 164 7 0 chr1 117138589 117138887 -125525466 - AluJb SINE Alu -12 300 1 28 29 0 0 chr1 117138890 117138925 -125525428 + AT_rich Low_complexity Low_complexity 1 35 0 711 327 57 35 chr1 117140103 117140470 -125523883 - L2 LINE L2 -2 3270 2896 2215 133 0 3 chr1 117140613 117140921 -125523432 - AluSx SINE Alu -5 307 1 308 275 137 47 chr1 117140960 117141516 -125522837 - L2 LINE L2 -654 2660 2055 230 303 37 9 chr1 117141522 117141631 -125522722 - L2 LINE L2 -1377 1937 1826 973 253 107 15 chr1 117142433 117142873 -125521480 - LTR33 LTR ERVL -1 520 6 2248 109 7 13 chr1 117142967 117143271 -125521082 + AluSx SINE Alu 1 302 -10 473 262 92 0 chr1 117143309 117143450 -125520903 - MIR SINE MIR -61 201 48 189 0 0 0 chr1 117143687 117143708 -125520645 + (TA)n Simple_repeat Simple_repeat 2 22 0 2161 124 0 0 chr1 117143723 117144005 -125520348 - AluSx SINE Alu -30 282 1 218 285 69 54 chr1 117144360 117144490 -125519863 + MIR SINE MIR 81 212 -50 207 257 18 53 chr1 117145324 117145437 -125518916 + CT-rich Low_complexity Low_complexity 1 109 0 2256 105 0 7 chr1 117146863 117147195 -125517158 - AluSx SINE Alu 0 312 3 460 293 145 16 chr1 117147294 117147673 -125516680 - L1M4 LINE L1 -1192 4954 4527 481 262 135 99 chr1 117147675 117148051 -125516302 - L1M4 LINE L1 -1685 4461 4053 1674 140 25 35 chr1 117148051 117148337 -125516016 - AluJo SINE Alu -17 295 13 481 262 135 99 chr1 117148337 117148574 -125515779 - L1M4 LINE L1 -2093 4053 3826 2169 89 55 0 chr1 117148591 117148882 -125515471 - AluY SINE Alu -4 307 1 246 302 159 26 chr1 117149119 117149928 -125514425 - L1M4 LINE L1 -2574 3572 2656 313 325 16 16 chr1 117150093 117150219 -125514134 - MIR SINE MIR -95 167 42 1867 108 4 8 chr1 117150876 117151126 -125513227 - AluSx SINE Alu -53 259 11 409 249 81 27 chr1 117152026 117152162 -125512191 - L2 LINE L2 -1 3312 3162 2536 57 0 3 chr1 117152162 117152458 -125511895 + AluSg SINE Alu 1 295 -15 409 249 81 27 chr1 117152458 117152506 -125511847 - L2 LINE L2 -151 3162 3118 1080 206 14 0 chr1 117152524 117152733 -125511620 + MIR SINE MIR 29 240 -22 199 295 39 0 chr1 117152820 117152898 -125511455 - L2 LINE L2 -262 3051 2971 473 194 161 39 chr1 117153858 117154013 -125510340 - MER5A DNA MER1_type -6 183 10 25 0 0 0 chr1 117154089 117154114 -125510239 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr1 117154334 117154362 -125509991 + AT_rich Low_complexity Low_complexity 1 28 0 998 258 125 37 chr1 117154389 117154493 -125509860 - L1ME4a LINE L1 0 6121 6028 2247 106 7 0 chr1 117154493 117154785 -125509568 - AluSx SINE Alu -18 294 1 998 258 125 37 chr1 117154785 117155356 -125508997 - L1ME4a LINE L1 -93 6028 5374 2163 117 0 29 chr1 117155561 117155877 -125508476 + AluSx SINE Alu 1 307 -5 293 301 106 0 chr1 117155904 117156027 -125508326 + MIR SINE MIR 52 187 -75 563 266 105 79 chr1 117156042 117156147 -125508206 + L1ME LINE L1 5256 5357 -764 1843 96 65 55 chr1 117156147 117156440 -125507913 + AluSg SINE Alu 1 296 -14 563 266 105 79 chr1 117156440 117156786 -125507567 + L1ME LINE L1 5357 5699 -422 447 257 41 18 chr1 117157698 117157869 -125506484 + MER5B DNA MER1_type 1 175 -3 297 0 0 0 chr1 117159965 117159998 -125504355 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 712 174 0 0 chr1 117160000 117160115 -125504238 - FLAM_C SINE Alu -27 116 2 2586 50 0 0 chr1 117160253 117160553 -125503800 - AluY SINE Alu -11 300 1 2176 137 0 6 chr1 117161044 117161358 -125502995 + AluJb SINE Alu 1 312 0 295 258 0 0 chr1 117161990 117162056 -125502297 + Charlie1 DNA MER1_type 6 71 -2690 890 143 65 28 chr1 117162106 117162323 -125502030 + Charlie1 DNA MER1_type 2427 2651 -110 474 174 54 0 chr1 117162522 117162614 -125501739 + Charlie1 DNA MER1_type 2665 2761 0 373 243 29 0 chr1 117162624 117162736 -125501617 - MIR SINE MIR -62 146 77 3004 155 67 4 chr1 117162745 117163236 -125501117 - MLT1F1 LTR MaLR 0 567 46 675 153 45 0 chr1 117163246 117163357 -125500996 + FLAM_C SINE Alu 5 120 -13 185 0 40 0 chr1 117163361 117163386 -125500967 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 408 169 108 24 chr1 117163386 117163469 -125500884 + FRAM SINE Alu 71 160 -6 212 225 0 0 chr1 117163507 117163547 -125500806 - MIR SINE MIR -177 85 46 420 285 117 9 chr1 117165751 117165965 -125498388 + L3 LINE CR1 1329 1565 -12 191 213 0 33 chr1 117166202 117166263 -125498090 + GA-rich Low_complexity Low_complexity 5 63 0 228 267 14 137 chr1 117166425 117166571 -125497782 - MIR3 SINE MIR -3 205 78 2349 109 0 0 chr1 117166616 117166919 -125497434 - AluSx SINE Alu -9 303 1 1457 147 13 93 chr1 117166995 117167307 -125497046 - AluJo SINE Alu -24 288 2 191 323 0 0 chr1 117167616 117167678 -125496675 - MIR SINE MIR -155 107 46 283 224 82 24 chr1 117167718 117167803 -125496550 - L2 LINE L2 -42 3271 3182 1448 166 59 42 chr1 117168150 117168439 -125495914 - AluJo SINE Alu 0 312 19 1610 173 32 7 chr1 117168466 117168749 -125495604 - AluJo SINE Alu -22 290 1 353 295 62 49 chr1 117168763 117168987 -125495366 - L2 LINE L2 -575 2739 2513 735 237 136 30 chr1 117169057 117169104 -125495249 + MIR SINE MIR 1 42 -220 2279 100 3 3 chr1 117169104 117169405 -125494948 - AluSq SINE Alu -12 301 1 735 237 136 30 chr1 117169405 117169593 -125494760 + MIR SINE MIR 42 261 -1 2678 31 0 19 chr1 117170281 117170598 -125493755 + AluY SINE Alu 1 311 0 830 267 170 32 chr1 117172110 117172598 -125491755 + L1MC4a LINE L1 5366 5647 -509 619 155 68 0 chr1 117172613 117172716 -125491637 - FLAM_A SINE Alu -32 110 1 1359 163 107 6 chr1 117173461 117173873 -125490480 + LTR54B LTR ERV1 1 510 0 254 141 78 62 chr1 117174016 117174080 -125490273 - Charlie4 DNA MER1_type -5 1956 1892 2327 87 20 0 chr1 117174751 117175051 -125489302 - AluSx SINE Alu -6 306 1 1024 164 20 36 chr1 117175667 117175862 -125488491 - AluJb SINE Alu -19 293 102 504 149 0 0 chr1 117175896 117175970 -125488383 - AluJ SINE Alu -195 117 44 410 221 25 49 chr1 117176433 117176555 -125487798 + MIR SINE MIR 96 214 -48 1580 158 9 81 chr1 117176624 117176946 -125487407 + AluJo SINE Alu 1 299 -13 373 279 19 25 chr1 117177071 117177232 -125487121 + L1MC/D LINE L1 4500 4659 -1487 336 189 25 74 chr1 117177527 117177649 -125486704 - LTR33A LTR ERVL -6 517 402 269 265 152 15 chr1 117178154 117178286 -125486067 + L1MC/D LINE L1 5583 5732 -2076 22 35 0 0 chr1 117178557 117178586 -125485767 + AT_rich Low_complexity Low_complexity 1 29 0 907 149 0 0 chr1 117179722 117179856 -125484497 - AluJo SINE Alu -178 134 1 303 346 10 0 chr1 117180291 117180392 -125483961 + MIR SINE MIR 161 262 0 315 281 47 53 chr1 117180413 117180584 -125483769 + MER3 DNA MER1_type 38 207 -2 * 1185 173 0 5 chr1 117180584 117180633 -125483720 - MER3 DNA MER1_type -161 48 1 825 219 12 0 chr1 117180908 117181077 -125483276 - FAM SINE Alu -4 171 1 2425 86 0 3 chr1 117181105 117181408 -125482945 + AluSc SINE Alu 1 302 -7 21 36 0 0 chr1 117181480 117181508 -125482845 + AT_rich Low_complexity Low_complexity 1 28 0 544 236 98 25 chr1 117181764 117181967 -125482386 + L1MEd LINE L1 30 247 -5872 502 279 128 29 chr1 117182061 117182758 -125481595 + L1MEd LINE L1 457 1249 -4870 1991 149 3 0 chr1 117183042 117183344 -125481009 + AluSg SINE Alu 1 303 -7 440 303 84 17 chr1 117183775 117184013 -125480340 + L1ME3A LINE L1 5687 5940 -230 450 273 31 62 chr1 117184025 117184285 -125480068 + L1M4b LINE L1 10 261 -6598 186 71 0 0 chr1 117184402 117184430 -125479923 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2338 85 0 0 chr1 117184430 117184713 -125479640 - AluSx SINE Alu -29 283 1 1701 178 0 47 chr1 117184859 117185179 -125479174 + AluJo SINE Alu 1 305 -7 25 0 0 0 chr1 117185338 117185363 -125478990 + AT_rich Low_complexity Low_complexity 1 25 0 821 197 162 21 chr1 117185448 117185732 -125478621 + L1M4b LINE L1 1336 1659 -5200 927 256 32 11 chr1 117185739 117186020 -125478333 + L1M4b LINE L1 1764 2050 -4909 203 136 23 23 chr1 117187066 117187110 -125477243 + (TA)n Simple_repeat Simple_repeat 2 45 0 2430 100 0 0 chr1 117188114 117188424 -125475929 + AluSg SINE Alu 1 310 0 1118 71 0 0 chr1 117188949 117189083 -125475270 + AluY SINE Alu 157 293 -18 186 43 0 0 chr1 117189083 117189106 -125475247 + (CA)n Simple_repeat Simple_repeat 2 24 0 2072 113 17 0 chr1 117189120 117189413 -125474940 + AluSx SINE Alu 1 298 -14 1748 152 52 7 chr1 117189466 117189756 -125474597 - AluJo SINE Alu -8 304 2 2235 91 13 3 chr1 117190665 117190963 -125473390 + AluSq SINE Alu 1 301 -12 1059 197 71 31 chr1 117191116 117191319 -125473034 + MER33 DNA MER1_type 1 221 -2364 745 150 63 16 chr1 117191319 117191446 -125472907 - FLAM_A SINE Alu 0 133 1 1059 197 71 31 chr1 117191446 117191536 -125472817 + MER33 DNA MER1_type 221 306 -18 1982 137 34 50 chr1 117192174 117192555 -125471798 + THE1C LTR MaLR 1 375 0 280 322 52 24 chr1 117193431 117193642 -125470711 + L1ME3 LINE L1 77 293 -6103 234 0 0 0 chr1 117193644 117193670 -125470683 + (A)n Simple_repeat Simple_repeat 1 26 0 354 294 72 6 chr1 117194036 117194216 -125470137 + L1ME3 LINE L1 697 888 -5508 1252 136 47 4 chr1 117194216 117194452 -125469901 + L1MA4 LINE L1 6050 6295 -5 332 269 75 50 chr1 117194467 117194668 -125469685 + L1ME3 LINE L1 809 1014 -5191 2149 189 68 2 chr1 117194728 117195168 -125469185 + L1ME1 LINE L1 5688 6156 -10 1716 264 115 30 chr1 117195180 117196817 -125467536 + L1ME3 LINE L1 1066 2815 -3400 180 0 0 0 chr1 117196817 117196837 -125467516 + (T)n Simple_repeat Simple_repeat 1 20 0 1250 161 5 0 chr1 117196852 117197045 -125467308 - AluSx SINE Alu -118 194 1 5204 253 66 39 chr1 117197045 117197395 -125466958 + L1ME3 LINE L1 2805 3144 -3071 1506 93 65 0 chr1 117197395 117197610 -125466743 + MER30 DNA MER1_type 1 229 -1 5204 253 66 39 chr1 117197610 117197746 -125466607 + L1ME3 LINE L1 3144 3275 -2940 2139 113 3 10 chr1 117197746 117198046 -125466307 - AluSx SINE Alu -12 300 3 5204 253 66 39 chr1 117198046 117198736 -125465617 + L1ME3 LINE L1 3275 3945 -2270 1985 165 0 13 chr1 117198736 117199052 -125465301 + AluJb SINE Alu 1 312 0 5204 253 66 39 chr1 117199052 117199293 -125465060 + L1ME3 LINE L1 3945 4178 -2037 1471 62 31 5 chr1 117199293 117199485 -125464868 - MER107 DNA MER1_type 0 197 1 5204 253 66 39 chr1 117199485 117199559 -125464794 + L1ME3 LINE L1 4178 4249 -1966 501 229 93 0 chr1 117199559 117199677 -125464676 + FLAM_A SINE Alu 1 129 -4 5204 253 66 39 chr1 117199677 117200377 -125463976 + L1ME3 LINE L1 4249 5059 -1156 1963 136 80 14 chr1 117200385 117200737 -125463616 + THE1C LTR MaLR 1 375 0 10136 119 48 5 chr1 117200740 117202250 -125462103 + THE1C-int LTR MaLR 6 1580 0 1864 128 102 9 chr1 117202250 117202593 -125461760 + THE1C LTR MaLR 1 375 0 942 212 109 14 chr1 117202594 117203600 -125460753 + L1ME3 LINE L1 5065 6229 -2 1689 156 81 0 chr1 117203652 117203935 -125460418 + AluSx SINE Alu 1 306 -6 233 227 0 0 chr1 117203963 117204007 -125460346 + L1MC5 LINE L1 7832 7875 -86 2006 135 0 7 chr1 117204821 117205118 -125459235 + AluSx SINE Alu 1 295 -17 1785 147 4 0 chr1 117205802 117206067 -125458286 + AluSx SINE Alu 39 304 -8 983 98 0 0 chr1 117206163 117206296 -125458057 + AluSq/x SINE Alu 1 133 -179 1281 193 4 21 chr1 117207821 117208054 -125456299 - MER8 DNA MER2_type -10 229 1 762 268 80 4 chr1 117208155 117208394 -125455959 - MIR SINE MIR 0 262 6 26 64 0 0 chr1 117208656 117208703 -125455650 + AT_rich Low_complexity Low_complexity 1 47 0 483 335 87 21 chr1 117208706 117208948 -125455405 + MIR SINE MIR 1 258 -4 226 259 52 0 chr1 117209024 117209082 -125455271 - L2 LINE L2 -190 3082 3022 194 200 0 44 chr1 117209248 117209293 -125455060 - L2 LINE L2 -5 3308 3266 251 250 203 23 chr1 117209842 117209970 -125454383 - MIR SINE MIR 0 262 112 754 236 58 40 chr1 117209989 117210214 -125454139 - MIR SINE MIR -8 254 26 21 71 0 0 chr1 117210593 117210635 -125453718 + AT_rich Low_complexity Low_complexity 1 42 0 312 27 0 0 chr1 117210881 117210918 -125453435 + (TG)n Simple_repeat Simple_repeat 2 38 0 310 360 52 0 chr1 117210931 117211067 -125453286 - L1ME LINE L1 -309 5853 5711 2901 87 72 17 chr1 117211080 117211551 -125452802 + L1MA3 LINE L1 5805 6301 -4 753 109 0 8 chr1 117212084 117212203 -125452150 + FLAM_C SINE Alu 26 143 0 579 234 169 0 chr1 117212504 117212658 -125451695 - MIR SINE MIR -45 217 38 896 191 47 39 chr1 117212658 117212914 -125451439 + L1ME3A LINE L1 5835 6092 -78 3014 135 86 25 chr1 117212937 117213506 -125450847 + MER6A DNA MER2_type 2 605 0 516 123 37 18 chr1 117214224 117214387 -125449966 + (TA)n Simple_repeat Simple_repeat 2 167 0 597 119 0 57 chr1 117214431 117215051 -125449302 + (TA)n Simple_repeat Simple_repeat 1 584 0 912 67 8 46 chr1 117215068 117215686 -125448667 + (TA)n Simple_repeat Simple_repeat 1 594 0 1766 168 3 19 chr1 117216751 117217060 -125447293 - AluJo SINE Alu -8 304 1 797 271 104 8 chr1 117217060 117217311 -125447042 + MLT1I LTR MaLR 123 397 -12 2304 135 32 115 chr1 117217659 117218127 -125446226 + Tigger2 DNA MER2_type 5 2717 -1 180 286 136 36 chr1 117218290 117218430 -125445923 + L2 LINE L2 530 683 -2631 800 112 86 0 chr1 117218673 117218789 -125445564 + FLAM_C SINE Alu 6 131 -12 457 207 81 0 chr1 117218813 117218924 -125445429 + L1MA6 LINE L1 6174 6293 -7 359 276 75 40 chr1 117218955 117219129 -125445224 + MLT1J LTR MaLR 1 180 -331 1235 156 15 15 chr1 117219184 117219389 -125444964 + AluJo SINE Alu 1 205 -107 2070 140 3 3 chr1 117220914 117221221 -125443132 + AluSx SINE Alu 1 307 -5 1824 127 94 0 chr1 117221222 117221498 -125442855 + AluSg SINE Alu 2 303 -7 5503 107 37 18 chr1 117221806 117223182 -125441171 + L1PA13 LINE L1 4766 6162 -1 2230 97 3 23 chr1 117223187 117223486 -125440867 + AluSp SINE Alu 1 293 -20 23 97 0 0 chr1 117224532 117224604 -125439749 + AT_rich Low_complexity Low_complexity 1 72 0 547 108 12 12 chr1 117225085 117225168 -125439185 - AluSg/x SINE Alu -19 290 208 2302 124 163 64 chr1 117225879 117226413 -125437940 - L1MB3 LINE L1 0 6183 5597 1446 139 143 8 chr1 117226518 117226776 -125437577 - AluJo SINE Alu -19 293 1 235 321 85 38 chr1 117226829 117226935 -125437418 + L2 LINE L2 3148 3258 -14 2851 13 0 0 chr1 117228003 117228313 -125436040 - AluYa5 SINE Alu -1 310 1 441 91 56 2 chr1 117228744 117228824 -125435529 - L1M3 LINE L1 -446 5734 5652 425 270 184 0 chr1 117229338 117229490 -125434863 - MER5A DNA MER1_type -5 184 5 385 194 0 0 chr1 117229511 117229578 -125434775 + Charlie5 DNA MER1_type 22 88 -2524 609 177 0 0 chr1 117229578 117229674 -125434679 - AluJb SINE Alu -16 296 201 882 143 139 28 chr1 117229703 117229954 -125434399 + Charlie5 DNA MER1_type 2232 2510 -102 914 164 7 50 chr1 117230195 117230387 -125433966 - MER31B LTR ERV1 -302 164 5 608 219 0 18 chr1 117230391 117230505 -125433848 + FLAM_A SINE Alu 5 116 -17 2128 77 10 40 chr1 117230522 117230821 -125433532 + AluSg SINE Alu 1 290 -20 789 166 0 0 chr1 117230835 117230980 -125433373 + (TG)n Simple_repeat Simple_repeat 2 146 0 923 215 163 8 chr1 117231571 117232046 -125432307 - MER92B LTR ERV1 -13 563 1 1602 148 82 0 chr1 117232191 117232461 -125431892 + AluJo SINE Alu 1 292 -20 396 0 0 0 chr1 117233062 117233106 -125431247 + (TG)n Simple_repeat Simple_repeat 2 45 0 3499 122 87 14 chr1 117234622 117235639 -125428714 + L1MA5 LINE L1 4705 5804 -496 2144 81 50 7 chr1 117235639 117235922 -125428431 + AluSq SINE Alu 1 295 -18 3499 122 87 14 chr1 117235922 117236025 -125428328 + L1MA5 LINE L1 5804 5898 -402 2015 102 0 4 chr1 117236027 117236292 -125428061 - AluSg SINE Alu -46 264 1 1863 244 57 34 chr1 117236427 117237038 -125427315 - L1MC4 LINE L1 -1 8041 7417 195 42 0 0 chr1 117237185 117237209 -125427144 + (TCCCC)n Simple_repeat Simple_repeat 1 24 0 2011 151 10 0 chr1 117237218 117237592 -125426761 - AluSx SINE Alu 0 377 1 190 188 109 47 chr1 117238121 117238185 -125426168 - L2 LINE L2 -21 3251 3184 827 173 0 16 chr1 117239001 117239128 -125425225 + FLAM_C SINE Alu 1 125 -18 21 0 0 0 chr1 117239318 117239339 -125425014 + AT_rich Low_complexity Low_complexity 1 21 0 1545 180 0 52 chr1 117239341 117239630 -125424723 - AluJo SINE Alu -32 280 7 2145 128 164 6 chr1 117240709 117241075 -125423278 - MSTA LTR MaLR -4 424 1 1503 165 23 23 chr1 117241291 117241572 -125422781 - AluJb SINE Alu 0 307 27 739 279 147 34 chr1 117241686 117242000 -125422353 - MLT1J LTR MaLR -49 462 88 2117 162 87 20 chr1 117242000 117242401 -125421952 - MSTA LTR MaLR 0 428 1 739 279 147 34 chr1 117242401 117242501 -125421852 - MLT1J LTR MaLR -423 88 1 443 226 137 8 chr1 117243162 117243286 -125421067 - MER58B DNA MER1_type 0 341 202 1940 130 3 24 chr1 117244012 117244365 -125419988 - MER4A LTR ERV1 0 664 261 554 135 31 10 chr1 117244365 117244461 -125419892 - MER4A LTR ERV1 -566 98 1 2385 92 0 3 chr1 117245580 117245883 -125418470 - AluSx SINE Alu -10 302 1 3830 91 54 75 chr1 117246583 117246765 -125417588 - L1MA3 LINE L1 -5 6300 6116 2344 88 3 0 chr1 117246765 117247061 -125417292 - AluSx SINE Alu -15 297 1 3830 91 54 75 chr1 117247061 117247529 -125416824 - L1MA3 LINE L1 -189 6116 5664 4166 154 19 122 chr1 117247529 117249060 -125415293 + pTR5 LTR ERV1 744 2606 0 617 149 0 0 chr1 117249295 117249382 -125414971 + AluJo SINE Alu 2 88 -224 888 206 0 29 chr1 117250710 117250880 -125413473 + FRAM SINE Alu 1 165 -1 33 25 0 0 chr1 117251358 117251398 -125412955 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr1 117252220 117252255 -125412098 + AT_rich Low_complexity Low_complexity 1 35 0 832 221 13 0 chr1 117254253 117254407 -125409946 - FRAM SINE Alu -25 151 1 1102 247 24 48 chr1 117254796 117255132 -125409221 + L1MEc LINE L1 39 366 -6030 647 277 28 12 chr1 117255116 117255369 -125408984 + L1MEc LINE L1 1272 1528 -4868 * 1177 167 5 19 chr1 117255449 117255665 -125408688 + AluJo SINE Alu 89 301 -11 479 268 134 17 chr1 117255667 117255846 -125408507 - MIR SINE MIR -57 205 6 1462 170 80 18 chr1 117255866 117256142 -125408211 + AluJo SINE Alu 1 293 -19 382 345 71 6 chr1 117256210 117256378 -125407975 - MIR SINE MIR -62 200 22 227 343 126 39 chr1 117256431 117256638 -125407715 + L2 LINE L2 2624 2848 -466 369 301 11 94 chr1 117256700 117256816 -125407537 + MIR SINE MIR 2 85 -177 2362 101 7 0 chr1 117256816 117257124 -125407229 - AluSx SINE Alu -2 310 1 369 301 11 94 chr1 117257124 117257273 -125407080 + MIR SINE MIR 85 245 -17 939 245 36 0 chr1 117257523 117257719 -125406634 - MER58A DNA MER1_type -19 205 3 2480 41 3 3 chr1 117258367 117258662 -125405691 - L1PA4 LINE L1 0 6155 5861 927 146 46 13 chr1 117258823 117258974 -125405379 + FRAM SINE Alu 11 166 -10 22 35 0 0 chr1 117259082 117259111 -125405242 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 117260329 117260352 -125404001 + AT_rich Low_complexity Low_complexity 1 23 0 368 172 116 20 chr1 117260992 117261094 -125403259 - MER50-int LTR ERV1 -1861 5133 3644 193 290 122 47 chr1 117261843 117261950 -125402403 - L2 LINE L2 0 3313 3199 237 282 118 12 chr1 117262284 117262369 -125401984 - L2 LINE L2 -573 2741 2648 195 250 167 0 chr1 117262545 117262605 -125401748 - L2 LINE L2 -16 3256 3187 188 309 191 30 chr1 117262731 117262899 -125401454 - L2 LINE L2 -1085 2229 2035 486 0 0 0 chr1 117263127 117263181 -125401172 + (CA)n Simple_repeat Simple_repeat 1 54 0 282 239 37 64 chr1 117263277 117263386 -125400967 - L2 LINE L2 -1569 1745 1640 893 215 16 11 chr1 117263664 117263850 -125400503 + MER5A DNA MER1_type 3 189 0 2351 79 3 0 chr1 117264983 117265274 -125399079 + AluSx SINE Alu 1 292 -20 1409 97 37 28 chr1 117265277 117265435 -125398918 - L1MA3 LINE L1 0 6305 6143 1560 175 0 65 chr1 117265435 117265760 -125398593 - AluJo SINE Alu -6 306 3 1409 97 37 28 chr1 117265760 117265817 -125398536 - L1MA3 LINE L1 -162 6143 6088 940 143 0 0 chr1 117265875 117266001 -125398352 - FLAM_C SINE Alu -7 126 1 496 354 132 10 chr1 117266234 117266720 -125397633 + L2 LINE L2 2243 2787 -527 2312 101 7 0 chr1 117266769 117267077 -125397276 - AluSq SINE Alu -1 312 3 208 216 0 0 chr1 117267646 117267683 -125396670 - L2 LINE L2 -9 3263 3227 483 342 161 15 chr1 117267841 117268183 -125396170 + L2 LINE L2 2879 3270 -2 209 217 43 58 chr1 117268191 117268260 -125396093 + MIR SINE MIR 84 151 -111 226 242 3 0 chr1 117268843 117268902 -125395451 + MIR SINE MIR 97 157 -51 1850 134 14 17 chr1 117269056 117269348 -125395005 - AluJb SINE Alu -21 291 1 183 365 0 0 chr1 117269401 117269453 -125394900 + L3 LINE CR1 1524 1575 -2 1226 108 25 2 chr1 117270102 117270342 -125394011 - AluJb SINE Alu -15 297 2 3379 242 198 24 chr1 117270475 117272244 -125392109 + L2 LINE L2 1237 3313 0 915 124 0 29 chr1 117272698 117272835 -125391518 + FRAM SINE Alu 39 171 -5 260 223 123 54 chr1 117272920 117273050 -125391303 + LTR57-int LTR ERVL 4625 4763 -580 1743 154 19 42 chr1 117273149 117273461 -125390892 - AluJo SINE Alu -7 305 1 431 307 132 0 chr1 117273596 117273785 -125390568 - MIR SINE MIR -2 260 47 1111 277 118 114 chr1 117274051 117274725 -125389628 - L2 LINE L2 -1495 1819 1149 473 57 0 14 chr1 117274725 117274795 -125389558 - FLAM_A SINE Alu -3 139 71 1111 277 118 114 chr1 117274795 117275411 -125388942 - L2 LINE L2 -2165 1149 455 279 217 255 11 chr1 117275521 117275652 -125388701 + MIR3 SINE MIR 15 167 -65 190 241 69 35 chr1 117276091 117276178 -125388175 - MIR SINE MIR -13 249 160 2244 64 0 68 chr1 117277994 117278305 -125386048 - AluY SINE Alu -21 290 1 1323 227 105 66 chr1 117278438 117278887 -125385466 + L2 LINE L2 1318 1748 -1565 2225 103 32 6 chr1 117278887 117279228 -125385125 - L1PA10 LINE L1 -4 6164 5815 1323 227 105 66 chr1 117279228 117279756 -125384597 + L2 LINE L2 1748 3308 -5 260 89 0 22 chr1 117280044 117280089 -125384264 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 412 149 9 61 chr1 117280161 117280275 -125384078 + CT-rich Low_complexity Low_complexity 3 110 0 317 222 0 11 chr1 117280294 117280384 -125383969 + CT-rich Low_complexity Low_complexity 4 92 0 312 223 0 9 chr1 117280391 117280461 -125383892 - AluJ/monomer SINE Alu -12 290 236 672 244 38 52 chr1 117280965 117281178 -125383175 - MIR SINE MIR 0 262 53 399 274 92 37 chr1 117281176 117281340 -125383013 + L2 LINE L2 1784 1956 -1358 * 189 367 181 0 chr1 117281390 117281530 -125382823 + L2 LINE L2 2079 2260 -1054 1889 153 0 11 chr1 117281530 117281854 -125382499 + AluJb SINE Alu 1 321 0 189 367 181 0 chr1 117281854 117281889 -125382464 + L2 LINE L2 2260 2287 -1027 769 224 81 114 chr1 117282034 117282463 -125381890 + MLT1J LTR MaLR 1 411 -100 2045 153 3 0 chr1 117282463 117282763 -125381590 - AluSx SINE Alu -11 301 1 769 224 81 114 chr1 117282763 117282861 -125381492 + MLT1J LTR MaLR 411 511 0 407 355 126 10 chr1 117283451 117283752 -125380601 + L2 LINE L2 2569 2904 -410 720 216 42 53 chr1 117284928 117285192 -125379161 + MIR SINE MIR 1 261 -1 328 316 59 0 chr1 117285526 117285662 -125378691 - L2 LINE L2 -922 2392 2249 1070 176 0 36 chr1 117285662 117285855 -125378498 + AluJb SINE Alu 122 307 -5 888 321 112 31 chr1 117285867 117286571 -125377782 - L2 LINE L2 -1087 2227 1467 224 167 42 21 chr1 117286638 117286686 -125377667 + L2 LINE L2 3257 3305 -8 725 117 6 106 chr1 117286797 117286976 -125377377 + L1MA9 LINE L1 5206 5366 -780 528 179 90 6 chr1 117286976 117287132 -125377221 + L1MA7 LINE L1 6123 6291 0 * 3579 123 12 5 chr1 117287131 117287732 -125376621 + L1MA9 LINE L1 5352 5956 -356 2272 144 25 10 chr1 117287991 117288394 -125375959 + L1MC1 LINE L1 5924 6332 -1 360 0 0 0 chr1 117289284 117289324 -125375029 + (CA)n Simple_repeat Simple_repeat 2 41 0 322 349 79 26 chr1 117291366 117291744 -125372609 + L2 LINE L2 1636 2033 -1281 501 280 157 55 chr1 117291992 117292195 -125372158 + L1ME4a LINE L1 5693 5874 -247 1689 170 59 7 chr1 117292195 117292483 -125371870 + AluJb SINE Alu 1 303 -9 501 280 157 55 chr1 117292483 117292643 -125371710 + L1ME4a LINE L1 5874 6093 -28 14375 118 31 7 chr1 117293319 117295572 -125368781 - Tigger1 DNA MER2_type 0 2418 219 1365 209 60 3 chr1 117295572 117295836 -125368517 + AluJo SINE Alu 1 249 -63 231 36 0 0 chr1 117295836 117295864 -125368489 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 315 0 0 0 chr1 117295863 117295898 -125368455 + (CA)n Simple_repeat Simple_repeat 1 35 0 1365 209 60 3 chr1 117295864 117295916 -125368437 + AluJo SINE Alu 249 299 -13 14375 118 31 7 chr1 117295916 117295978 -125368375 - Tigger1 DNA MER2_type -2199 219 49 8120 29 0 0 chr1 117295978 117296996 -125367357 - L1P LINE L1 -3440 2706 1689 13352 25 0 0 chr1 117296996 117299336 -125365017 + L1PA2 LINE L1 3812 6150 -5 226 191 21 0 chr1 117299337 117299384 -125364969 - Tigger1 DNA MER2_type -2365 53 6 629 178 9 0 chr1 117299491 117299598 -125364755 + FLAM_A SINE Alu 1 108 -34 2730 150 27 46 chr1 117299646 117300232 -125364121 - L1MB8 LINE L1 -10 6168 5594 324 301 29 39 chr1 117300262 117300365 -125363988 - L2 LINE L2 -186 3086 2985 278 180 82 0 chr1 117300499 117300560 -125363793 + L1M4 LINE L1 5557 5622 -556 4266 125 75 34 chr1 117300835 117300878 -125363475 - L1MB2 LINE L1 -7 6164 6124 2228 100 3 0 chr1 117300878 117301168 -125363185 - AluSq SINE Alu -22 291 1 4266 125 75 34 chr1 117301168 117302063 -125362290 - L1MB2 LINE L1 -47 6124 5187 218 333 83 0 chr1 117302348 117302444 -125361909 + MIR SINE MIR 64 167 -95 3313 162 77 8 chr1 117302486 117302815 -125361538 + L1MC1 LINE L1 5605 5910 -423 1459 79 0 16 chr1 117302815 117303037 -125361316 + AluSg/x SINE Alu 96 314 0 3313 162 77 8 chr1 117303037 117303371 -125360982 + L1MC1 LINE L1 5910 6316 -17 271 355 90 10 chr1 117303426 117303725 -125360628 - L2 LINE L2 -1277 2037 1715 287 341 181 42 chr1 117304031 117305282 -125359071 + L2 LINE L2 108 1531 -1783 484 231 138 115 chr1 117305965 117306014 -125358339 - L3 LINE CR1 -5 1572 1526 1596 158 31 34 chr1 117306014 117306306 -125358047 + AluJo SINE Alu 1 291 -21 484 231 138 115 chr1 117306306 117306568 -125357785 - L3 LINE CR1 -51 1526 1254 195 311 108 0 chr1 117306565 117306639 -125357714 + MIR SINE MIR 67 148 -60 * 262 214 56 22 chr1 117306714 117306803 -125357550 + MLT1J2 LTR MaLR 53 144 -306 528 217 165 18 chr1 117306803 117307042 -125357311 + MLT1J LTR MaLR 227 430 -16 1810 187 0 3 chr1 117307609 117307908 -125356445 - AluJo SINE Alu -1 311 14 562 187 128 172 chr1 117308122 117308395 -125355958 + MIR SINE MIR 2 262 0 34 0 0 0 chr1 117308452 117308486 -125355867 + AT_rich Low_complexity Low_complexity 1 34 0 3198 136 81 12 chr1 117308489 117309131 -125355222 - L1MA9 LINE L1 -7 6305 5620 803 266 60 53 chr1 117309245 117309794 -125354559 + L1ME4a LINE L1 5565 6117 -4 299 220 17 0 chr1 117310224 117310283 -125354070 + Tigger3(Golem) DNA MER2_type 1 60 -2969 918 172 0 0 chr1 117310284 117310435 -125353918 + Tigger3(Golem) DNA MER2_type 2878 3028 -1 22 35 0 0 chr1 117310550 117310579 -125353774 + AT_rich Low_complexity Low_complexity 1 29 0 1982 138 0 19 chr1 117310666 117310977 -125353376 - AluSx SINE Alu -7 305 1 296 328 46 23 chr1 117311264 117311395 -125352958 + L2 LINE L2 2549 2682 -632 203 214 0 29 chr1 117312005 117312075 -125352278 + (TA)n Simple_repeat Simple_repeat 2 69 0 702 169 25 0 chr1 117312146 117312264 -125352089 - MER68 LTR ERV1 -6 556 436 1305 128 118 48 chr1 117312290 117312579 -125351774 - MER68 LTR ERV1 -248 314 6 273 338 149 15 chr1 117312903 117313104 -125351249 - MIR SINE MIR -18 244 17 595 260 146 5 chr1 117313411 117313603 -125350750 + MIR SINE MIR 32 250 -12 369 285 121 80 chr1 117315294 117315659 -125348694 - L1M2 LINE L1 -5943 906 527 843 164 0 0 chr1 117316198 117316338 -125348015 + AluY SINE Alu 157 296 -15 203 270 0 0 chr1 117316624 117316661 -125347692 - L2 LINE L2 -97 3175 3139 22 0 0 0 chr1 117316804 117316826 -125347527 + AT_rich Low_complexity Low_complexity 1 22 0 300 282 35 24 chr1 117317277 117317362 -125346991 - L2 LINE L2 -1 3271 3186 191 88 29 0 chr1 117317417 117317451 -125346902 + (TG)n Simple_repeat Simple_repeat 1 35 0 233 57 29 0 chr1 117317451 117317486 -125346867 + (GA)n Simple_repeat Simple_repeat 2 37 0 234 309 40 32 chr1 117317492 117317618 -125346735 - L2 LINE L2 -1310 2004 1878 23 0 0 0 chr1 117317711 117317734 -125346619 + AT_rich Low_complexity Low_complexity 1 23 0 226 205 0 0 chr1 117317829 117317868 -125346485 - MIR SINE MIR -5 257 219 * 365 319 94 87 chr1 117317834 117318260 -125346093 - L2 LINE L2 -16 3256 2828 320 206 52 10 chr1 117318399 117318496 -125345857 - LTR33 LTR ERVL -6 515 415 695 260 17 6 chr1 117318528 117318701 -125345652 - LTR33 LTR ERVL -322 199 25 768 268 116 29 chr1 117318892 117319306 -125345047 + MLT1J2 LTR MaLR 1 450 0 253 287 85 47 chr1 117319611 117319740 -125344613 + L2 LINE L2 3180 3313 0 1278 138 54 0 chr1 117319840 117320079 -125344274 + LTR48 LTR ERV1 523 774 -13 1036 189 10 10 chr1 117320961 117321157 -125343196 - MER20 DNA MER1_type -23 196 1 1011 221 116 0 chr1 117321349 117321616 -125342737 + MLT1J1 LTR MaLR 1 298 -148 1306 112 174 4 chr1 117321712 117321970 -125342383 - L1MB3 LINE L1 -7 6176 5875 303 191 0 0 chr1 117321970 117322033 -125342320 + MLT1J2 LTR MaLR 375 437 -13 238 204 0 20 chr1 117322041 117322090 -125342263 + L2 LINE L2 3224 3271 -1 36 62 0 0 chr1 117322137 117322201 -125342152 + AT_rich Low_complexity Low_complexity 1 64 0 257 330 92 0 chr1 117323941 117324050 -125340303 + MIR3 SINE MIR 42 160 -48 1088 151 68 0 chr1 117324050 117324242 -125340111 + MER3 DNA MER1_type 1 205 -4 247 226 151 57 chr1 117324262 117324368 -125339985 - L2 LINE L2 0 3272 3157 195 255 0 0 chr1 117324464 117324511 -125339842 + MIR3 SINE MIR 156 202 -6 225 202 151 34 chr1 117324511 117324581 -125339772 - L1MC4 LINE L1 -1296 6744 6614 * 278 235 5 18 chr1 117324512 117324678 -125339675 + (TA)n Simple_repeat Simple_repeat 1 163 0 28 0 0 0 chr1 117324651 117324679 -125339674 + AT_rich Low_complexity Low_complexity 1 28 0 * 316 237 11 43 chr1 117324679 117324772 -125339581 + L1MC4 LINE L1 6616 6705 -1337 * 318 262 58 19 chr1 117324771 117324874 -125339479 - L1MC4 LINE L1 -1323 6719 6613 24 53 0 0 chr1 117324874 117324912 -125339441 + AT_rich Low_complexity Low_complexity 1 38 0 326 189 9 0 chr1 117324934 117325045 -125339308 + (TA)n Simple_repeat Simple_repeat 2 113 0 207 0 0 0 chr1 117325087 117325110 -125339243 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 792 167 0 8 chr1 117325118 117325238 -125339115 - FLAM_C SINE Alu -14 119 1 196 139 0 28 chr1 117325261 117325297 -125339056 - L2 LINE L2 -8 3305 3271 224 252 17 92 chr1 117326126 117326245 -125338108 - L2 LINE L2 -221 3051 2942 221 362 33 52 chr1 117326384 117326691 -125337662 - L2 LINE L2 -566 2748 2448 36943 73 1 7 chr1 117327601 117333281 -125331072 - L1PA6 LINE L1 -3 6151 505 648 236 35 64 chr1 117334302 117334505 -125329848 - MIR SINE MIR 0 262 66 9086 60 5 4 chr1 117334592 117335662 -125328691 - MER11C LTR ERVK 0 1071 1 1184 285 132 18 chr1 117335677 117336250 -125328103 - L2 LINE L2 0 3313 2671 730 256 41 16 chr1 117336315 117336561 -125327792 - L2 LINE L2 -910 2404 2153 5717 149 47 7 chr1 117336566 117338083 -125326270 + L1PA16 LINE L1 4589 6166 0 616 121 26 26 chr1 117338162 117338278 -125326075 - L1MC5 LINE L1 -734 7227 7112 1138 260 96 39 chr1 117338278 117338662 -125325691 - MLT1J2 LTR MaLR -44 406 1 203 189 19 0 chr1 117338691 117338744 -125325609 + CT-rich Low_complexity Low_complexity 2 55 0 963 151 180 0 chr1 117339366 117339538 -125324815 + Tigger3(Golem) DNA MER2_type 2836 3038 0 245 56 37 93 chr1 117339540 117339594 -125324759 - L1ME LINE L1 -306 5860 5810 2318 163 93 25 chr1 117339795 117340235 -125324118 + MLT1D LTR MaLR 1 477 -28 1924 165 174 23 chr1 117340235 117340666 -125323687 + LTR54B LTR ERV1 1 496 -2 2318 163 93 25 chr1 117340666 117340698 -125323655 + MLT1D LTR MaLR 477 505 0 2026 123 0 50 chr1 117340848 117341165 -125323188 - AluSx SINE Alu -7 305 5 185 298 96 29 chr1 117341287 117341391 -125322962 + MIR SINE MIR 50 160 -102 241 262 49 0 chr1 117341969 117342030 -125322323 - MIR SINE MIR -6 256 193 1726 160 3 14 chr1 117342046 117342355 -125321998 + AluJo SINE Alu 1 306 0 1507 108 10 0 chr1 117342355 117342558 -125321795 - AluSq SINE Alu -108 205 1 480 340 50 30 chr1 117342842 117343142 -125321211 + L2 LINE L2 2859 3164 -149 774 234 43 0 chr1 117343231 117343415 -125320938 - MIR SINE MIR -68 194 3 215 292 15 31 chr1 117343426 117343491 -125320862 + L2 LINE L2 3208 3271 -1 23 0 0 0 chr1 117343670 117343693 -125320660 + AT_rich Low_complexity Low_complexity 1 23 0 1695 148 9 74 chr1 117343894 117344218 -125320135 + AluJo SINE Alu 1 303 -9 2274 109 3 0 chr1 117344238 117344541 -125319812 + AluSc SINE Alu 1 304 -5 258 95 0 0 chr1 117346919 117346961 -125317392 + (TG)n Simple_repeat Simple_repeat 1 42 0 1682 157 7 28 chr1 117346974 117347260 -125317093 - AluJo SINE Alu -30 282 3 23 0 0 0 chr1 117347309 117347332 -125317021 + AT_rich Low_complexity Low_complexity 1 23 0 357 278 0 0 chr1 117347527 117347635 -125316718 + FLAM_C SINE Alu 1 108 -25 1585 152 95 0 chr1 117347758 117348022 -125316331 + AluJb SINE Alu 10 298 -14 2113 140 10 0 chr1 117348088 117348396 -125315957 - AluSx SINE Alu -1 311 1 2327 76 0 3 chr1 117348478 117348767 -125315586 - AluSc SINE Alu -19 290 3 404 278 210 15 chr1 117348904 117349109 -125315244 - MIR SINE MIR -9 253 9 2289 95 0 7 chr1 117349944 117350250 -125314103 - AluSx SINE Alu -8 304 1 659 178 0 0 chr1 117350509 117350616 -125313737 - MER7A DNA MER2_type -241 105 1 517 245 140 74 chr1 117350623 117350645 -125313708 + L1ME1 LINE L1 5868 5887 -447 297 0 0 0 chr1 117350645 117350678 -125313675 + (CA)n Simple_repeat Simple_repeat 2 34 0 517 245 140 74 chr1 117350678 117350943 -125313410 + L1ME1 LINE L1 5887 6334 0 1726 138 4 0 chr1 117350959 117351206 -125313147 + AluSx SINE Alu 39 286 -26 1499 150 48 33 chr1 117351237 117351346 -125313007 + AluJo SINE Alu 11 117 -195 315 0 0 0 chr1 117351346 117351381 -125312972 + (CA)n Simple_repeat Simple_repeat 2 36 0 1499 150 48 33 chr1 117351381 117351544 -125312809 + AluJo SINE Alu 117 287 -25 200 350 81 31 chr1 117351809 117351969 -125312384 + L2 LINE L2 2825 2992 -280 2287 67 18 3 chr1 117352512 117352796 -125311557 + AluSg SINE Alu 1 288 -22 242 258 30 0 chr1 117353185 117353251 -125311102 + GA-rich Low_complexity Low_complexity 2 69 0 2356 96 3 0 chr1 117353309 117353621 -125310732 + AluSp SINE Alu 1 313 0 598 283 109 5 chr1 117353623 117353807 -125310546 + MIR SINE MIR 49 251 -11 989 71 79 0 chr1 117354215 117354341 -125310012 - MER85 DNA T2_type -3 136 1 258 219 156 0 chr1 117355046 117355110 -125309243 - MER81 DNA DNA -40 74 1 2029 158 0 0 chr1 117355295 117355598 -125308755 - AluSx SINE Alu -9 303 1 22 35 0 0 chr1 117355600 117355629 -125308724 + AT_rich Low_complexity Low_complexity 1 29 0 481 285 137 37 chr1 117355738 117355887 -125308466 - L1ME4a LINE L1 -240 5881 5748 1709 152 91 4 chr1 117355887 117356163 -125308190 - AluJo SINE Alu -12 300 1 481 285 137 37 chr1 117356163 117356526 -125307827 - L1ME4a LINE L1 -373 5748 5311 1117 277 55 42 chr1 117356558 117357104 -125307249 - L1ME4a LINE L1 -178 5943 5391 321 292 127 42 chr1 117356703 117357183 -125307170 - L1PA8A LINE L1 -318 5813 5293 * 1039 228 112 56 chr1 117357377 117357806 -125306547 + LTR16A1 LTR ERVL 5 457 0 339 148 0 0 chr1 117357806 117357860 -125306493 + MIR SINE MIR 133 186 -76 394 178 56 22 chr1 117357870 117357960 -125306393 - MIR SINE MIR 0 262 170 272 234 16 0 chr1 117357982 117358046 -125306307 + MIR SINE MIR 198 262 0 360 200 0 0 chr1 117358216 117358296 -125306057 + (TA)n Simple_repeat Simple_repeat 1 80 0 1982 138 3 0 chr1 117358301 117358590 -125305763 - AluJo SINE Alu -17 295 6 330 224 0 45 chr1 117358980 117359047 -125305306 + L2 LINE L2 3234 3297 -16 252 59 0 0 chr1 117359086 117359120 -125305233 + (TC)n Simple_repeat Simple_repeat 2 35 0 312 216 68 0 chr1 117359151 117359225 -125305128 - L1MC4 LINE L1 -454 7588 7510 987 272 96 65 chr1 117359226 117359256 -125305097 + L2 LINE L2 2686 2714 -599 2149 116 10 0 chr1 117359256 117359549 -125304804 + AluSq SINE Alu 1 296 -17 704 61 10 0 chr1 117359550 117359648 -125304705 + (TA)n Simple_repeat Simple_repeat 1 99 0 987 272 96 65 chr1 117359648 117360065 -125304288 + L2 LINE L2 2714 3167 -146 1607 131 58 38 chr1 117360065 117360356 -125303997 - AluJo SINE Alu -5 307 11 987 272 96 65 chr1 117360356 117360508 -125303845 + L2 LINE L2 3167 3313 0 553 285 111 39 chr1 117360507 117360816 -125303537 - L2 LINE L2 -290 3023 2697 * 180 315 90 27 chr1 117360820 117360931 -125303422 - L2 LINE L2 -865 2449 2332 1358 159 62 40 chr1 117360943 117361219 -125303134 + AluJb SINE Alu 1 282 -30 676 300 53 12 chr1 117361377 117361624 -125302729 - MIR SINE MIR -1 261 5 2219 69 28 3 chr1 117361831 117362121 -125302232 - AluSx SINE Alu -15 297 1 2425 77 3 0 chr1 117362558 117362870 -125301483 - AluSp SINE Alu 0 313 1 26 30 0 0 chr1 117363052 117363085 -125301268 + GC_rich Low_complexity Low_complexity 1 33 0 23 68 0 0 chr1 117364849 117364893 -125299460 + AT_rich Low_complexity Low_complexity 1 44 0 297 282 188 45 chr1 117364911 117365113 -125299240 - MIR SINE MIR -9 253 23 2047 81 66 0 chr1 117365721 117365992 -125298361 + AluSg SINE Alu 1 289 -21 273 302 71 40 chr1 117366151 117366277 -125298076 + L2 LINE L2 2941 3070 -202 1941 114 53 0 chr1 117366481 117366762 -125297591 + AluSx SINE Alu 1 296 -16 184 216 0 59 chr1 117367474 117367525 -125296828 + L3 LINE CR1 1508 1555 -22 1831 167 3 0 chr1 117368120 117368414 -125295939 - AluJo SINE Alu -12 300 6 2285 130 9 0 chr1 117368442 117368773 -125295580 + MER2 DNA MER2_type 11 344 -1 984 167 48 0 chr1 117369095 117369263 -125295090 + FAM SINE Alu 1 45 -4 428 275 114 6 chr1 117369498 117369665 -125294688 + L3 LINE CR1 1242 1426 -151 231 283 0 0 chr1 117369693 117369746 -125294607 + L3 LINE CR1 1524 1576 -1 263 289 13 7 chr1 117369888 117370037 -125294316 - L1MEd LINE L1 -4924 1195 1046 207 0 0 0 chr1 117370065 117370088 -125294265 + (TTG)n Simple_repeat Simple_repeat 2 24 0 568 148 0 0 chr1 117370099 117370180 -125294173 - AluSg/x SINE Alu -31 279 199 1711 117 4 0 chr1 117370180 117370410 -125293943 - AluSx SINE Alu -81 231 1 376 164 0 0 chr1 117370453 117370520 -125293833 - Alu SINE Alu 0 302 236 403 198 185 32 chr1 117370520 117370677 -125293676 + L1ME3A LINE L1 5701 5881 -289 24 0 0 0 chr1 117371648 117371672 -125292681 + AT_rich Low_complexity Low_complexity 1 24 0 311 211 56 11 chr1 117372132 117372222 -125292131 - L1M4c LINE L1 -4095 2289 2196 859 167 0 8 chr1 117372230 117372362 -125291991 - FLAM_A SINE Alu -2 131 1 22 35 0 0 chr1 117372434 117372463 -125291890 + AT_rich Low_complexity Low_complexity 1 29 0 2138 126 7 3 chr1 117373047 117373356 -125290997 - AluSx SINE Alu -2 310 1 299 244 35 12 chr1 117373357 117373443 -125290910 - Charlie8 DNA MER1_type -2276 141 54 2271 111 0 7 chr1 117374214 117374520 -125289833 - AluSx SINE Alu -8 304 1 1677 163 35 24 chr1 117374520 117374808 -125289545 - AluJb SINE Alu -21 291 1 408 349 159 20 chr1 117375102 117375245 -125289108 + L2 LINE L2 2422 2544 -728 4979 64 3 2 chr1 117375245 117375835 -125288518 - LTR10C LTR ERV1 0 591 1 408 349 159 20 chr1 117375835 117376275 -125288078 + L2 LINE L2 2544 3080 -192 510 245 27 50 chr1 117377073 117377334 -125287019 + L1MC5 LINE L1 7643 7897 -64 290 278 96 56 chr1 117377513 117377662 -125286691 + MIR SINE MIR 7 167 -95 1794 138 3 35 chr1 117377662 117377973 -125286380 - AluJo SINE Alu -11 301 1 290 278 96 56 chr1 117377973 117378021 -125286332 + MIR SINE MIR 167 212 -50 295 267 121 24 chr1 117379572 117379737 -125284616 - L1MC/D LINE L1 -2006 5802 5622 21 82 0 0 chr1 117379797 117379846 -125284507 + AT_rich Low_complexity Low_complexity 1 49 0 2184 99 39 0 chr1 117379941 117380225 -125284128 + AluSx SINE Alu 1 295 -17 2009 155 0 0 chr1 117380584 117380875 -125283478 + AluSx SINE Alu 1 291 -21 428 239 164 44 chr1 117381250 117381409 -125282944 - MER5B DNA MER1_type 0 178 1 230 291 0 0 chr1 117381492 117381547 -125282806 - MER113 DNA MER1_type? 0 521 467 2534 139 177 0 chr1 117381597 117382043 -125282310 + MER1A DNA MER1_type 3 527 0 25 65 0 0 chr1 117383850 117383896 -125280457 + AT_rich Low_complexity Low_complexity 1 46 0 400 226 145 8 chr1 117385263 117385387 -125278966 + MIR SINE MIR 112 252 -10 23 33 0 0 chr1 117386142 117386172 -125278181 + AT_rich Low_complexity Low_complexity 1 30 0 2335 102 3 0 chr1 117386402 117386707 -125277646 - AluSq SINE Alu -7 306 1 457 259 120 23 chr1 117386837 117387053 -125277300 + MARNA DNA Mariner 329 565 -21 912 232 112 13 chr1 117387165 117387398 -125276955 - MIR SINE MIR 0 262 7 1675 70 0 0 chr1 117388366 117388566 -125275787 + AluSc SINE Alu 98 297 -12 701 246 21 5 chr1 117388586 117388773 -125275580 - Charlie8 DNA MER1_type -2142 275 86 491 281 65 7 chr1 117388853 117388992 -125275361 + L3 LINE CR1 1356 1502 -75 659 243 128 43 chr1 117389687 117389922 -125274431 + MIR SINE MIR 7 261 -1 205 149 75 0 chr1 117390568 117390635 -125273718 + (TA)n Simple_repeat Simple_repeat 1 72 0 1509 234 83 174 chr1 117391402 117391912 -125272441 + L2 LINE L2 1687 2242 -1072 961 180 50 5 chr1 117391912 117392112 -125272241 + MER3 DNA MER1_type 1 209 0 1509 234 83 174 chr1 117392112 117392396 -125271957 + L2 LINE L2 2242 2550 -764 534 193 0 0 chr1 117392396 117392516 -125271837 - FLAM_A SINE Alu 0 149 30 1509 234 83 174 chr1 117392516 117392763 -125271590 + L2 LINE L2 2550 2818 -496 1574 115 0 5 chr1 117392763 117392980 -125271373 + AluSx SINE Alu 1 216 -96 723 207 71 0 chr1 117392981 117393121 -125271232 - FRAM SINE Alu -16 150 1 1509 234 83 174 chr1 117393121 117393292 -125271061 + L2 LINE L2 2817 2872 -442 216 232 0 54 chr1 117393292 117393348 -125271005 + L2 LINE L2 3202 3254 -59 539 305 153 25 chr1 117393392 117393785 -125270568 + L1MEd LINE L1 435 877 -5242 1075 225 26 0 chr1 117393810 117394041 -125270312 - MIR SINE MIR 0 262 26 2502 66 0 0 chr1 117394258 117394563 -125269790 + AluY SINE Alu 1 305 -6 2166 55 48 0 chr1 117394570 117394842 -125269511 + AluY SINE Alu 1 285 -26 530 120 157 9 chr1 117394907 117395015 -125269338 + FLAM_C SINE Alu 2 125 -8 1351 191 26 26 chr1 117395027 117395300 -125269053 + AluJo SINE Alu 3 275 -37 623 274 132 35 chr1 117395457 117395791 -125268562 + L1MEd LINE L1 2653 3048 -3081 2419 92 0 0 chr1 117395791 117396096 -125268257 + AluSc SINE Alu 1 305 -4 623 274 132 35 chr1 117396096 117396210 -125268143 + L1MEd LINE L1 3048 3150 -2979 603 266 102 42 chr1 117396296 117396751 -125267602 + L1MEd LINE L1 3317 3808 -2321 2397 71 0 0 chr1 117396751 117397045 -125267308 + AluSg SINE Alu 1 294 -16 603 266 102 42 chr1 117397045 117397111 -125267242 + L1MEd LINE L1 3808 3869 -2260 568 256 66 4 chr1 117397185 117397412 -125266941 + L1ME2 LINE L1 2136 2376 -3753 2065 127 6 10 chr1 117397414 117397728 -125266625 + AluSq SINE Alu 1 313 0 310 255 98 0 chr1 117397836 117397938 -125266415 + L1ME2 LINE L1 2445 2556 -3573 1871 168 3 7 chr1 117397968 117398277 -125266076 - AluJb SINE Alu -4 308 1 313 238 191 4 chr1 117398292 117398544 -125265809 + L1ME2 LINE L1 4532 4830 -1299 1672 148 18 18 chr1 117398636 117398920 -125265433 + AluJo SINE Alu 6 289 -23 914 113 8 15 chr1 117398933 117399066 -125265287 + AluSq/x SINE Alu 1 132 -180 433 250 100 94 chr1 117399089 117399717 -125264636 + L1ME2 LINE L1 5306 5922 -225 29 60 0 0 chr1 117400614 117400664 -125263689 + AT_rich Low_complexity Low_complexity 1 50 0 2105 67 4 0 chr1 117401260 117401514 -125262839 + AluSc SINE Alu 1 255 -54 1868 136 0 65 chr1 117401792 117402115 -125262238 + AluJb SINE Alu 1 302 -10 644 169 55 80 chr1 117402716 117402917 -125261436 - HAL1 LINE L1 -813 1694 1499 2481 50 0 14 chr1 117403122 117403419 -125260934 + AluSc SINE Alu 1 293 -16 208 175 0 25 chr1 117403429 117403461 -125260892 + (CATATA)n Simple_repeat Simple_repeat 3 35 -6 617 211 0 49 chr1 117403461 117403584 -125260769 - FLAM_A SINE Alu -16 117 1 208 175 0 25 chr1 117403584 117403591 -125260762 + (CATATA)n Simple_repeat Simple_repeat 35 41 0 301 223 232 0 chr1 117403626 117403738 -125260615 + L1ME2 LINE L1 5997 6134 -13 33 56 0 0 chr1 117403985 117404039 -125260314 + AT_rich Low_complexity Low_complexity 1 54 0 2313 112 0 0 chr1 117404799 117405104 -125259249 - AluSx SINE Alu -7 305 1 659 145 6 7 chr1 117405338 117405517 -125258836 + AluJb SINE Alu 87 298 -14 22 35 0 0 chr1 117405533 117405562 -125258791 + AT_rich Low_complexity Low_complexity 1 29 0 1988 163 0 3 chr1 117405681 117405981 -125258372 + AluSx SINE Alu 2 300 -12 2305 115 0 0 chr1 117405983 117406287 -125258066 + AluSx SINE Alu 1 304 -8 226 277 194 40 chr1 117406765 117406963 -125257390 + L2 LINE L2 2329 2584 -730 1903 125 11 0 chr1 117406963 117407227 -125257126 + AluSx SINE Alu 30 296 -16 226 277 194 40 chr1 117407227 117407306 -125257047 + L2 LINE L2 2584 2649 -665 24 53 0 0 chr1 117407633 117407671 -125256682 + AT_rich Low_complexity Low_complexity 1 38 0 1107 167 0 0 chr1 117408644 117408818 -125255535 + FAM SINE Alu 1 174 -1 1670 171 10 20 chr1 117408837 117409129 -125255224 - AluJo SINE Alu -23 289 1 180 97 0 0 chr1 117409735 117409766 -125254587 + (T)n Simple_repeat Simple_repeat 1 31 0 2690 277 187 44 chr1 117410128 117411318 -125253035 - L2 LINE L2 -6 3307 2290 192 111 0 0 chr1 117411318 117411354 -125252999 + (GGGTG)n Simple_repeat Simple_repeat 5 40 0 2690 277 187 44 chr1 117411354 117412167 -125252186 - L2 LINE L2 -1023 2290 1001 4869 217 103 14 chr1 117412167 117413491 -125250862 + L1 LINE L1 3609 5103 -1055 1824 153 35 11 chr1 117413491 117413778 -125250575 + AluJo SINE Alu 9 302 -10 4869 217 103 14 chr1 117413778 117414064 -125250289 + L1 LINE L1 5103 5362 -796 307 263 129 85 chr1 117414066 117414290 -125250063 - L2 LINE L2 -2503 811 578 2160 111 3 3 chr1 117414515 117414803 -125249550 + AluSx SINE Alu 14 301 -11 730 183 12 19 chr1 117414844 117415031 -125249322 - MER58B DNA MER1_type 0 341 39 1796 140 25 14 chr1 117416271 117416402 -125247951 + AluJo SINE Alu 1 129 -183 2325 97 0 7 chr1 117416402 117416700 -125247653 + AluSx SINE Alu 1 296 -16 1796 140 25 14 chr1 117416700 117416854 -125247499 + AluJo SINE Alu 129 289 -23 21 0 0 0 chr1 117416881 117416902 -125247451 + AT_rich Low_complexity Low_complexity 1 21 0 182 208 94 19 chr1 117417292 117417345 -125247008 + MER5A DNA MER1_type 109 165 -24 2102 112 18 3 chr1 117417786 117418072 -125246281 + AluSx SINE Alu 1 290 -22 26 0 0 0 chr1 117418318 117418344 -125246009 + AT_rich Low_complexity Low_complexity 1 26 0 1213 175 192 0 chr1 117418703 117418943 -125245410 - AluJo SINE Alu -16 286 1 408 230 0 0 chr1 117419015 117419089 -125245264 - AluJ/FLAM SINE Alu -238 74 1 686 259 219 37 chr1 117420887 117421131 -125243222 - L2 LINE L2 -4 3309 3111 1701 178 24 7 chr1 117421131 117421423 -125242930 + AluJo SINE Alu 1 297 -15 686 259 219 37 chr1 117421423 117421690 -125242663 - L2 LINE L2 -202 3111 2720 2156 110 7 13 chr1 117421734 117422042 -125242311 - AluSx SINE Alu -6 306 1 645 204 96 48 chr1 117423549 117423779 -125240574 + Charlie1 DNA MER1_type 1 241 -2520 470 211 75 0 chr1 117423759 117423892 -125240461 + Charlie1 DNA MER1_type 2619 2761 0 * 555 119 24 0 chr1 117424830 117424956 -125239397 + (TA)n Simple_repeat Simple_repeat 1 129 0 2551 37 0 10 chr1 117424957 117425256 -125239097 - AluY SINE Alu -15 296 1 1183 118 57 24 chr1 117426072 117426283 -125238070 + L1MD2 LINE L1 6140 6357 -2 198 261 261 36 chr1 117426718 117426829 -125237524 - L2 LINE L2 0 3272 3137 31 26 0 0 chr1 117427259 117427297 -125237056 + AT_rich Low_complexity Low_complexity 1 38 0 2212 89 0 0 chr1 117427300 117427580 -125236773 - AluSx SINE Alu -11 301 22 1007 106 24 71 chr1 117427708 117427878 -125236475 + AluSg/x SINE Alu 114 275 -37 189 74 0 0 chr1 117427882 117427909 -125236444 + (CAA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr1 117428451 117428474 -125235879 + AT_rich Low_complexity Low_complexity 1 23 0 2067 132 30 0 chr1 117428552 117428855 -125235498 - AluSx SINE Alu 0 312 1 1596 188 7 3 chr1 117429837 117430129 -125234224 + AluJo SINE Alu 3 295 -17 2417 72 0 0 chr1 117430283 117430576 -125233777 - AluY SINE Alu -18 293 1 1779 173 14 52 chr1 117430577 117430946 -125233407 + MER82 DNA MER2_type 19 373 -280 972 259 57 19 chr1 117431005 117431268 -125233085 + MER82 DNA MER2_type 381 653 0 1081 105 0 14 chr1 117431532 117431675 -125232678 + AluSq/x SINE Alu 5 145 -167 2513 61 0 3 chr1 117431675 117431972 -125232381 + AluY SINE Alu 1 296 -15 2152 118 3 3 chr1 117432529 117432826 -125231527 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr1 117433190 117433221 -125231132 + AT_rich Low_complexity Low_complexity 1 31 0 232 339 83 8 chr1 117435109 117435230 -125229123 - L2 LINE L2 0 3313 3184 28 29 0 0 chr1 117435427 117435462 -125228891 + AT_rich Low_complexity Low_complexity 1 35 0 33 43 0 0 chr1 117436103 117436150 -125228203 + AT_rich Low_complexity Low_complexity 1 47 0 1687 149 47 22 chr1 117436160 117436462 -125227891 - AluJo SINE Alu 0 309 1 2961 159 21 43 chr1 117436624 117436772 -125227581 + L1MB8 LINE L1 5611 5761 -417 1354 166 99 14 chr1 117436772 117437055 -125227298 + AluSx SINE Alu 1 307 -5 2961 159 21 43 chr1 117437055 117437414 -125226939 + L1MB8 LINE L1 5761 6106 -72 1895 123 13 48 chr1 117437414 117437723 -125226630 - AluJb SINE Alu -12 300 3 2961 159 21 43 chr1 117437723 117437794 -125226559 + L1MB8 LINE L1 6106 6177 -1 2032 111 31 3 chr1 117437829 117438118 -125226235 - AluSp SINE Alu -16 297 1 2190 121 0 3 chr1 117438165 117438471 -125225882 + AluSx SINE Alu 2 306 -6 990 125 0 50 chr1 117438601 117438761 -125225592 - MER3 DNA MER1_type -53 156 5 184 370 22 87 chr1 117438871 117438974 -125225379 + L2 LINE L2 3058 3151 -121 1041 191 11 11 chr1 117438974 117439152 -125225201 + MER5B DNA MER1_type 1 178 0 184 370 22 87 chr1 117439152 117439186 -125225167 + L2 LINE L2 3151 3186 -86 303 277 0 48 chr1 117439220 117439303 -125225050 + L2 LINE L2 3184 3262 -10 2334 97 3 0 chr1 117439376 117439676 -125224677 + AluSp SINE Alu 1 301 -12 1707 116 3 49 chr1 117439868 117440152 -125224201 + AluSg SINE Alu 15 285 -25 439 224 41 110 chr1 117440410 117440462 -125223891 - L2 LINE L2 0 3313 3259 357 24 0 0 chr1 117440462 117440504 -125223849 + (TG)n Simple_repeat Simple_repeat 1 42 0 2017 103 3 45 chr1 117440504 117440795 -125223558 - AluSp SINE Alu -33 280 2 439 224 41 110 chr1 117440795 117440987 -125223366 - L2 LINE L2 -52 3261 3085 508 281 49 22 chr1 117441007 117441192 -125223161 + MLT1H1 LTR MaLR 7 196 -359 2759 181 39 19 chr1 117441192 117441727 -125222626 + MLT2B3 LTR ERVL 1 546 -8 543 235 139 61 chr1 117441739 117442031 -125222322 + MLT1H1 LTR MaLR 184 508 -47 2375 81 0 0 chr1 117442031 117442326 -125222027 + AluY SINE Alu 1 295 -16 543 235 139 61 chr1 117442326 117442378 -125221975 + MLT1H1 LTR MaLR 508 555 0 936 280 62 42 chr1 117442414 117442864 -125221489 - L2 LINE L2 -341 2973 2515 639 258 42 37 chr1 117442870 117443060 -125221293 + MLT1J1 LTR MaLR 3 193 -253 1150 276 167 10 chr1 117443277 117443799 -125220554 - L2 LINE L2 -798 2516 1913 2208 183 84 0 chr1 117443887 117444281 -125220072 + Tigger7 DNA MER2_type 1 427 -2060 2106 116 3 3 chr1 117444281 117444573 -125219780 + AluSx SINE Alu 1 292 -20 2214 88 3 3 chr1 117444575 117444880 -125219473 + AluSp SINE Alu 1 305 0 1028 180 0 11 chr1 117444884 117445067 -125219286 + AluSg/x SINE Alu 128 308 -2 831 158 8 0 chr1 117445069 117445202 -125219151 + Tigger7 DNA MER2_type 439 572 -161 * 1212 146 23 14 chr1 117445189 117445409 -125218944 + Tigger7 DNA MER2_type 2262 2483 -4 557 135 10 10 chr1 117445433 117445529 -125218824 + L1MEc LINE L1 37 132 -6264 1856 152 0 19 chr1 117445531 117445846 -125218507 + AluJb SINE Alu 1 309 -3 835 111 15 52 chr1 117446536 117446671 -125217682 - FLAM_C SINE Alu -8 135 6 352 232 246 7 chr1 117446930 117447068 -125217285 - MER5A DNA MER1_type -10 179 9 24 32 0 0 chr1 117447221 117447252 -125217101 + AT_rich Low_complexity Low_complexity 1 31 0 2266 85 3 0 chr1 117447261 117447554 -125216799 + AluSp SINE Alu 1 294 -19 454 176 266 58 chr1 117447555 117447743 -125216610 - MIR SINE MIR -5 257 31 293 257 54 0 chr1 117448104 117448178 -125216175 - MER5A DNA MER1_type -110 79 2 1842 147 0 7 chr1 117448270 117448570 -125215783 + AluSx SINE Alu 1 298 -14 2218 91 7 17 chr1 117449430 117449728 -125214625 - AluSx SINE Alu -17 295 1 4246 123 58 68 chr1 117449885 117450461 -125213892 - L1MB3 LINE L1 -31 6152 5585 2308 92 7 0 chr1 117450461 117450754 -125213599 - AluSq SINE Alu -17 296 2 4246 123 58 68 chr1 117450754 117451015 -125213338 - L1MB3 LINE L1 -598 5585 5323 209 33 33 0 chr1 117451015 117451045 -125213308 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 598 117 0 0 chr1 117451047 117451124 -125213229 - FRAM SINE Alu -30 146 70 496 70 180 10 chr1 117451124 117451224 -125213129 - L1MB3 LINE L1 -815 5331 5215 998 129 0 0 chr1 117451225 117451364 -125212989 - FLAM_C SINE Alu -4 139 1 565 118 0 0 chr1 117451423 117451508 -125212845 + MER4B LTR ERV1 1 85 -525 1978 135 17 10 chr1 117451508 117451805 -125212548 + AluSx SINE Alu 1 299 -13 256 91 159 0 chr1 117451805 117451849 -125212504 + MER4D LTR ERV1 187 237 -635 1545 110 22 13 chr1 117451873 117452101 -125212252 + MER4E LTR ERV1 550 779 0 1229 174 26 26 chr1 117452143 117452373 -125211980 + AluJo SINE Alu 1 230 -82 369 0 0 0 chr1 117452451 117452492 -125211861 + (CA)n Simple_repeat Simple_repeat 2 42 0 1967 108 3 34 chr1 117452756 117452949 -125211404 - AluSx SINE Alu -26 286 104 5870 71 30 3 chr1 117452949 117453695 -125210658 - MER4E LTR ERV1 0 766 1 1967 108 3 34 chr1 117453695 117453796 -125210557 - AluSx SINE Alu -208 104 1 2279 90 3 7 chr1 117454037 117454337 -125210016 + AluSq SINE Alu 1 299 -14 4066 109 33 71 chr1 117454456 117454610 -125209743 + LTR8 LTR ERV1 12 170 -521 2233 89 27 7 chr1 117454610 117454902 -125209451 + AluSx SINE Alu 1 298 -14 4066 109 33 71 chr1 117454902 117455453 -125208900 + LTR8 LTR ERV1 170 690 -1 702 215 25 0 chr1 117455594 117455715 -125208638 + FLAM_C SINE Alu 1 124 -9 2076 285 138 15 chr1 117457440 117458174 -125206179 + L2 LINE L2 1954 2597 -716 828 149 52 26 chr1 117458174 117458328 -125206025 + L1MC1 LINE L1 6176 6333 0 2076 285 138 15 chr1 117458328 117458339 -125206014 + L2 LINE L2 2597 2605 -708 2387 69 3 20 chr1 117458339 117458644 -125205709 + AluY SINE Alu 1 300 -11 2076 285 138 15 chr1 117458644 117458897 -125205456 + L2 LINE L2 2605 3085 -228 532 117 13 0 chr1 117458897 117458974 -125205379 + AluSg/x SINE Alu 219 296 -14 277 269 212 0 chr1 117458982 117459175 -125205178 + L2 LINE L2 3077 3310 -3 1433 178 4 8 chr1 117459322 117459580 -125204773 + AluJo SINE Alu 44 300 -12 1795 174 0 3 chr1 117459590 117459884 -125204469 + AluJo SINE Alu 1 293 -19 991 113 0 0 chr1 117459886 117460019 -125204334 + FLAM_C SINE Alu 1 133 0 241 125 0 25 chr1 117460915 117460955 -125203398 + LTR23 LTR ERV1 320 358 -79 202 159 48 16 chr1 117460956 117461019 -125203334 + (TTAA)n Simple_repeat Simple_repeat 2 66 0 2282 92 3 0 chr1 117461023 117461318 -125203035 + AluSg SINE Alu 1 296 -14 241 47 0 47 chr1 117461327 117461370 -125202983 + Alu SINE Alu 262 302 0 189 351 81 59 chr1 117461621 117461892 -125202461 - L2 LINE L2 -415 2899 2623 671 316 152 32 chr1 117462156 117462815 -125201538 - L2 LINE L2 0 3313 2565 2364 90 0 7 chr1 117462835 117463135 -125201218 - AluSx SINE Alu -14 298 1 1770 113 106 0 chr1 117463251 117463516 -125200837 + AluSx SINE Alu 1 293 -19 1086 134 6 17 chr1 117463518 117463690 -125200663 + AluSq SINE Alu 136 305 -8 22 0 0 0 chr1 117463857 117463879 -125200474 + AT_rich Low_complexity Low_complexity 1 22 0 2471 47 0 41 chr1 117463879 117464197 -125200156 + AluY SINE Alu 1 305 -6 721 309 151 43 chr1 117464200 117464809 -125199544 - L2 LINE L2 -1031 2283 1609 287 232 316 7 chr1 117464870 117464911 -125199442 + HAL1 LINE L1 1980 2007 -500 186 43 0 0 chr1 117464911 117464934 -125199419 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 287 232 316 7 chr1 117464934 117465047 -125199306 + HAL1 LINE L1 2007 2182 -325 821 201 7 0 chr1 117465065 117465247 -125199106 + AluJb SINE Alu 137 319 0 242 179 54 80 chr1 117465271 117465383 -125198970 + HAL1 LINE L1 2212 2320 -187 * 374 223 19 29 chr1 117465382 117465485 -125198868 - HAL1 LINE L1 -275 2232 2131 2182 149 15 32 chr1 117465538 117465881 -125198472 + MER1B DNA MER1_type 1 337 0 2156 135 0 0 chr1 117466132 117466436 -125197917 + AluSx SINE Alu 1 304 -8 2274 98 0 3 chr1 117466531 117466827 -125197526 + AluY SINE Alu 1 295 -16 258 81 0 0 chr1 117466922 117466959 -125197394 + (TG)n Simple_repeat Simple_repeat 2 38 0 1105 141 0 0 chr1 117467626 117467789 -125196564 + FRAM SINE Alu 1 162 -14 21 0 0 0 chr1 117467882 117467903 -125196450 + AT_rich Low_complexity Low_complexity 1 21 0 1694 172 19 19 chr1 117467936 117468244 -125196109 + AluJo SINE Alu 1 308 -4 301 281 156 7 chr1 117470018 117470153 -125194200 + L1MC4 LINE L1 7799 7953 -89 2257 104 0 10 chr1 117470281 117470588 -125193765 + AluSc SINE Alu 1 304 -5 510 319 175 26 chr1 117470619 117471335 -125193018 + L2 LINE L2 2476 3313 0 704 164 112 0 chr1 117471770 117471904 -125192449 + Tigger7 DNA MER2_type 2438 2586 -1 31 26 0 0 chr1 117472983 117473021 -125191332 + AT_rich Low_complexity Low_complexity 1 38 0 843 124 0 0 chr1 117473021 117473134 -125191219 - FLAM_C SINE Alu -25 118 6 2126 125 0 0 chr1 117473143 117473451 -125190902 - AluSx SINE Alu 0 310 3 1338 171 0 38 chr1 117473639 117473879 -125190474 + AluJb SINE Alu 1 231 -81 1342 133 0 60 chr1 117474158 117474391 -125189962 + AluJb SINE Alu 86 304 -8 2217 116 3 0 chr1 117474450 117474742 -125189611 - AluSx SINE Alu -19 293 1 458 119 34 85 chr1 117475358 117475389 -125188964 + Charlie8 DNA MER1_type 51 82 -259 2188 113 3 3 chr1 117475389 117475680 -125188673 - AluSq SINE Alu -22 291 1 458 119 34 85 chr1 117475680 117475766 -125188587 + Charlie8 DNA MER1_type 82 162 -179 734 197 0 0 chr1 117475766 117475883 -125188470 + FLAM_C SINE Alu 2 118 -25 2121 128 0 0 chr1 117475905 117476194 -125188159 - AluSx SINE Alu -23 289 1 806 200 79 18 chr1 117476684 117476849 -125187504 - FAM SINE Alu 0 175 1 439 301 51 56 chr1 117477114 117477500 -125186853 + HAL1 LINE L1 428 810 -1697 30 0 0 0 chr1 117477500 117477530 -125186823 + AT_rich Low_complexity Low_complexity 1 30 0 875 110 0 0 chr1 117477530 117477648 -125186705 - FLAM_C SINE Alu -25 118 1 446 252 80 40 chr1 117477656 117477930 -125186423 + HAL1 LINE L1 808 1092 -1415 479 228 74 69 chr1 117478613 117478802 -125185551 + HAL1 LINE L1 1301 1490 -1017 1380 156 0 5 chr1 117478812 117479024 -125185329 + AluSg/x SINE Alu 85 295 -17 1524 230 137 85 chr1 117479028 117479801 -125184552 + HAL1 LINE L1 1480 2211 -296 2238 107 7 3 chr1 117479801 117480100 -125184253 + AluSq SINE Alu 1 300 -13 1524 230 137 85 chr1 117480100 117480147 -125184206 + HAL1 LINE L1 2211 2254 -253 879 136 8 0 chr1 117480147 117480272 -125184081 + FLAM_C SINE Alu 1 126 -7 1524 230 137 85 chr1 117480272 117480427 -125183926 + HAL1 LINE L1 2254 2507 0 1571 174 50 4 chr1 117481758 117482039 -125182314 - AluJo SINE Alu -18 294 1 235 279 27 72 chr1 117482307 117482418 -125181935 - L2 LINE L2 0 3313 3208 2289 104 7 0 chr1 117482521 117482818 -125181535 + AluSx SINE Alu 1 299 -13 1521 168 51 60 chr1 117482829 117483144 -125181209 + AluJo SINE Alu 1 312 0 198 172 0 47 chr1 117483144 117483160 -125181193 + GA-rich Low_complexity Low_complexity 1 16 -45 2580 51 0 13 chr1 117483160 117483471 -125180882 + AluY SINE Alu 1 307 -4 198 172 0 47 chr1 117483471 117483518 -125180835 + GA-rich Low_complexity Low_complexity 16 61 0 2023 148 3 0 chr1 117483908 117484206 -125180147 + AluSx SINE Alu 1 299 -13 2158 86 4 7 chr1 117484651 117484930 -125179423 + AluSq SINE Alu 21 298 -15 1240 175 135 40 chr1 117485109 117485383 -125178970 + AluSg SINE Alu 1 300 -10 1190 183 15 123 chr1 117485752 117485916 -125178437 + AluJb SINE Alu 2 113 -189 2287 103 0 0 chr1 117485916 117486217 -125178136 + AluSg SINE Alu 1 301 -9 1190 183 15 123 chr1 117486217 117486386 -125177967 + AluJb SINE Alu 113 299 -3 447 187 22 11 chr1 117486556 117486647 -125177706 - MIR SINE MIR -1 261 170 25 0 0 0 chr1 117486652 117486677 -125177676 + AT_rich Low_complexity Low_complexity 1 25 0 231 153 17 17 chr1 117486692 117486700 -125177653 + (TAAA)n Simple_repeat Simple_repeat 4 11 -51 1890 146 25 4 chr1 117486700 117486981 -125177372 + AluSx SINE Alu 1 287 -25 231 153 17 17 chr1 117486981 117487031 -125177322 + (TAAA)n Simple_repeat Simple_repeat 10 62 0 23 0 0 0 chr1 117487098 117487121 -125177232 + AT_rich Low_complexity Low_complexity 1 23 0 393 245 49 10 chr1 117487170 117487272 -125177081 - MIR SINE MIR 0 262 157 1837 153 7 10 chr1 117487296 117487591 -125176762 + AluJb SINE Alu 1 294 -18 1768 103 38 14 chr1 117488461 117488752 -125175601 + L1P5 LINE L1 5426 5723 -431 1197 202 23 0 chr1 117488773 117489035 -125175318 - L1M4 LINE L1 -3435 2711 2444 22 0 0 0 chr1 117489064 117489086 -125175267 + AT_rich Low_complexity Low_complexity 1 22 0 2059 125 0 10 chr1 117489196 117489492 -125174861 - AluSx SINE Alu -19 293 1 1559 163 45 17 chr1 117489670 117489790 -125174563 + AluSc SINE Alu 1 116 -193 216 0 0 0 chr1 117489790 117489814 -125174539 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1559 163 45 17 chr1 117489814 117489981 -125174372 + AluSc SINE Alu 116 296 -13 2192 108 13 0 chr1 117490144 117490449 -125173904 + AluSc SINE Alu 1 309 0 226 208 0 0 chr1 117490456 117490504 -125173849 + MIR SINE MIR 79 126 -136 2181 90 10 0 chr1 117490664 117490954 -125173399 + AluSp SINE Alu 1 293 -20 463 283 90 6 chr1 117491125 117491291 -125173062 - MIR SINE MIR -59 203 24 1524 155 4 16 chr1 117491494 117491746 -125172607 - AluJb SINE Alu -20 292 44 782 150 0 0 chr1 117491891 117492004 -125172349 - FLAM_C SINE Alu -25 118 6 25 51 0 0 chr1 117492010 117492049 -125172304 + AT_rich Low_complexity Low_complexity 1 39 0 561 261 23 23 chr1 117492248 117492370 -125171983 - MIR SINE MIR -117 145 21 2416 83 0 0 chr1 117492370 117492670 -125171683 + AluSg SINE Alu 1 300 -10 2017 110 34 20 chr1 117492819 117493111 -125171242 - AluSx SINE Alu -16 296 1 2241 105 0 0 chr1 117493168 117493454 -125170899 - AluSx SINE Alu -24 288 3 1378 96 5 15 chr1 117493462 117493659 -125170694 + AluSc SINE Alu 112 306 -3 393 245 113 38 chr1 117494024 117494264 -125170089 + L1ME4a LINE L1 5693 5956 -165 2430 85 3 0 chr1 117494264 117494571 -125169782 + AluSq SINE Alu 1 308 -5 393 245 113 38 chr1 117494571 117494595 -125169758 + L1ME4a LINE L1 5956 5977 -144 253 183 0 0 chr1 117494645 117494705 -125169648 + L1ME4a LINE L1 6062 6121 0 22 35 0 0 chr1 117494726 117494755 -125169598 + AT_rich Low_complexity Low_complexity 1 29 0 1336 146 158 20 chr1 117494824 117495077 -125169276 + AluJb SINE Alu 3 290 -12 2508 76 0 0 chr1 117495126 117495429 -125168924 - AluY SINE Alu -8 303 1 753 221 47 0 chr1 117496510 117496659 -125167694 - FAM SINE Alu -19 156 1 2204 103 23 3 chr1 117496846 117497146 -125167207 + AluSg SINE Alu 1 306 -4 459 324 75 6 chr1 117497250 117497423 -125166930 - MIR3 SINE MIR -8 200 16 1910 181 6 8 chr1 117497497 117497856 -125166497 + MLT1A1 LTR MaLR 8 365 0 308 145 79 0 chr1 117498792 117498868 -125165485 - L1MA7 LINE L1 -12 6279 6198 1853 174 7 13 chr1 117498974 117499284 -125165069 - AluJo SINE Alu -4 308 1 2196 94 0 14 chr1 117499890 117500178 -125164175 - AluSx SINE Alu -28 284 1 598 273 68 6 chr1 117500527 117500703 -125163650 + MIR SINE MIR 72 258 -4 29 60 0 0 chr1 117500777 117500827 -125163526 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr1 117502776 117502802 -125161551 + AT_rich Low_complexity Low_complexity 1 26 0 623 332 92 0 chr1 117503005 117503255 -125161098 - L2 LINE L2 -2472 842 570 290 263 11 0 chr1 117503257 117503352 -125161001 - L1ME4a LINE L1 -216 5905 5810 405 209 38 19 chr1 117503513 117503618 -125160735 - L1ME4a LINE L1 -512 5609 5503 180 200 0 0 chr1 117504069 117504114 -125160239 + (CATA)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chr1 117504600 117504635 -125159718 + AT_rich Low_complexity Low_complexity 1 35 0 572 205 187 18 chr1 117504837 117505008 -125159345 - MIR SINE MIR -57 205 6 1913 192 0 3 chr1 117505787 117506095 -125158258 - AluJb SINE Alu -5 307 1 364 224 109 7 chr1 117506453 117506600 -125157753 - MER103 DNA DNA -2 164 3 180 194 28 0 chr1 117506727 117506763 -125157590 + MER5B DNA MER1_type 2 38 -140 2059 146 0 10 chr1 117506923 117507225 -125157128 + AluJb SINE Alu 1 299 -13 231 216 91 57 chr1 117507382 117507470 -125156883 + MIR SINE MIR 117 207 -55 808 284 45 5 chr1 117508470 117508692 -125155661 - MIR SINE MIR 0 262 32 1142 117 49 29 chr1 117508700 117508905 -125155448 + MER2 DNA MER2_type 2 210 -135 28 0 0 0 chr1 117509699 117509727 -125154626 + AT_rich Low_complexity Low_complexity 1 28 0 2407 200 65 76 chr1 117509907 117510722 -125153631 + MER21B LTR ERV1 1 806 -57 683 167 270 18 chr1 117511186 117511443 -125152910 + MER33 DNA MER1_type 1 363 0 341 281 57 72 chr1 117512127 117512390 -125151963 + L2 LINE L2 2596 2854 -460 2016 148 3 0 chr1 117512408 117512705 -125151648 - AluJb SINE Alu -12 300 3 1558 178 45 11 chr1 117512719 117513005 -125151348 - AluJb SINE Alu -16 296 1 233 277 0 0 chr1 117513457 117513504 -125150849 - L2 LINE L2 -17 3255 3209 197 350 29 10 chr1 117514988 117515091 -125149262 - L2 LINE L2 -31 3282 3178 403 225 286 28 chr1 117515516 117515698 -125148655 - MIR SINE MIR 0 262 34 1554 162 0 81 chr1 117515773 117516094 -125148259 + AluJo SINE Alu 1 295 -17 228 248 26 89 chr1 117516542 117516667 -125147686 + MIR SINE MIR 4 116 -92 431 262 191 1 chr1 117516677 117516848 -125147505 - MIR SINE MIR -61 201 3 2323 77 3 16 chr1 117517185 117517498 -125146855 + AluSc SINE Alu 1 309 0 899 120 0 0 chr1 117517519 117517661 -125146692 + L1MA3 LINE L1 6163 6304 -1 541 277 28 0 chr1 117517743 117517884 -125146469 + MIR SINE MIR 72 216 -46 180 111 0 0 chr1 117518379 117518406 -125145947 + (TG)n Simple_repeat Simple_repeat 2 28 0 987 220 0 0 chr1 117520062 117520248 -125144105 - MER5A DNA MER1_type -3 186 1 485 280 119 16 chr1 117520367 117520560 -125143793 - MIR SINE MIR -2 260 48 2259 123 3 0 chr1 117520584 117520893 -125143460 + AluSx SINE Alu 1 310 -2 682 154 7 114 chr1 117521165 117521314 -125143039 - FLAM_A SINE Alu 0 133 1 281 290 200 19 chr1 117521441 117521596 -125142757 + MER5A DNA MER1_type 2 184 -5 358 213 9 3 chr1 117521606 117521712 -125142641 - MER5A DNA MER1_type 0 178 37 1620 154 11 39 chr1 117521712 117521991 -125142362 - AluJo SINE Alu -38 274 4 210 36 55 109 chr1 117522054 117522109 -125142244 + (TTTTTA)n Simple_repeat Simple_repeat 4 55 0 399 172 196 68 chr1 117523047 117523210 -125141143 + MER5A DNA MER1_type 4 187 -2 860 196 29 12 chr1 117523221 117523394 -125140959 + MER5B DNA MER1_type 2 177 -1 697 171 99 61 chr1 117523860 117523941 -125140412 + MIR SINE MIR 75 151 -111 2202 100 7 16 chr1 117523941 117524251 -125140102 + AluSx SINE Alu 1 307 -5 697 171 99 61 chr1 117524251 117524350 -125140003 + MIR SINE MIR 151 262 0 2026 144 0 25 chr1 117525104 117525424 -125138929 + AluJo SINE Alu 1 312 0 1368 127 92 7 chr1 117525432 117525724 -125138629 + MER33 DNA MER1_type 6 322 -2 636 306 155 30 chr1 117525730 117526265 -125138088 - L2 LINE L2 -484 2830 2229 274 218 11 69 chr1 117526264 117526351 -125138002 + MIR SINE MIR 111 192 -70 * 2223 120 10 0 chr1 117527262 117527570 -125136783 + AluSx SINE Alu 1 311 -1 1866 145 16 29 chr1 117528138 117528449 -125135904 + AluJo SINE Alu 1 307 -5 309 219 0 0 chr1 117528452 117528525 -125135828 + GA-rich Low_complexity Low_complexity 4 76 0 2394 39 60 0 chr1 117528850 117529134 -125135219 - AluY SINE Alu -10 301 1 218 291 67 22 chr1 117529392 117529526 -125134827 - MIR SINE MIR -24 238 99 299 326 43 7 chr1 117529609 117529747 -125134606 - MER117 DNA MER1_type -33 164 22 2157 71 71 21 chr1 117530973 117531253 -125133100 - AluSc SINE Alu -15 294 1 454 285 69 0 chr1 117531640 117531784 -125132569 - MIR SINE MIR 0 262 109 2251 105 3 0 chr1 117531786 117532081 -125132272 - AluY SINE Alu -15 296 1 1093 91 0 7 chr1 117532433 117532576 -125131777 - AluSq/x SINE Alu -170 142 1 397 379 29 0 chr1 117533152 117533292 -125131061 - L2 LINE L2 0 3272 3129 386 103 0 0 chr1 117533444 117533502 -125130851 - L1MD2 LINE L1 -15 6344 6287 678 177 0 39 chr1 117533502 117533632 -125130721 + FLAM_C SINE Alu 3 127 -16 2263 65 0 11 chr1 117534265 117534540 -125129813 + AluY SINE Alu 1 272 -39 23 0 0 0 chr1 117534603 117534626 -125129727 + AT_rich Low_complexity Low_complexity 1 23 0 303 152 91 0 chr1 117534690 117534756 -125129597 + L1M2 LINE L1 5432 5503 -794 266 232 20 71 chr1 117534953 117535052 -125129301 + MIR3 SINE MIR 109 202 -6 976 86 0 0 chr1 117535585 117535713 -125128640 + FLAM_C SINE Alu 1 128 -5 1835 141 58 10 chr1 117535740 117536031 -125128322 + AluJo SINE Alu 1 305 -7 203 263 0 18 chr1 117536258 117536315 -125128038 - L2 LINE L2 0 3272 3217 254 246 46 0 chr1 117536397 117536462 -125127891 - L2 LINE L2 -13 3300 3233 1323 91 12 0 chr1 117536565 117536730 -125127623 - AluSq SINE Alu -146 167 1 922 234 0 0 chr1 117536749 117536924 -125127429 - FAM SINE Alu 0 175 1 302 302 80 61 chr1 117537129 117537226 -125127127 - L3 LINE CR1 -388 1189 1095 1703 100 151 0 chr1 117537226 117537485 -125126868 + AluSx SINE Alu 1 298 -14 2241 71 4 4 chr1 117537491 117537793 -125126560 + AluY SINE Alu 3 304 0 302 302 80 61 chr1 117537793 117537899 -125126454 - L3 LINE CR1 -486 1091 974 1995 131 3 0 chr1 117537983 117538288 -125126065 + AluSp SINE Alu 2 307 -6 2285 118 0 7 chr1 117538291 117538597 -125125756 + AluSx SINE Alu 1 304 -8 702 120 0 0 chr1 117538862 117538962 -125125391 - AluJ/FLAM SINE Alu -210 102 3 2507 52 0 10 chr1 117538968 117539275 -125125078 - AluY SINE Alu -7 304 1 2595 40 0 3 chr1 117539942 117540242 -125124111 - AluY SINE Alu -12 299 1 209 158 0 35 chr1 117540415 117540472 -125123881 - L2 LINE L2 0 3313 3259 548 221 95 128 chr1 117540499 117540518 -125123835 - L1ME LINE L1 -353 5809 5791 1599 185 77 37 chr1 117540518 117540842 -125123511 - MER1B DNA MER1_type 0 337 1 548 221 95 128 chr1 117540842 117541016 -125123337 - L1ME LINE L1 -371 5791 5613 2046 136 3 0 chr1 117541016 117541303 -125123050 - AluSq SINE Alu -19 294 7 548 221 95 128 chr1 117541303 117541373 -125122980 - L1ME LINE L1 -549 5613 5542 2221 122 0 3 chr1 117541373 117541677 -125122676 - AluSc SINE Alu -6 303 1 548 221 95 128 chr1 117541677 117541982 -125122371 - L1ME LINE L1 -620 5542 5258 2256 111 0 3 chr1 117541995 117542302 -125122051 - AluSg SINE Alu -4 306 1 2215 113 7 0 chr1 117542409 117542700 -125121653 - AluSx SINE Alu -19 293 1 2437 55 17 0 chr1 117542794 117543086 -125121267 - AluY SINE Alu -14 297 1 1859 167 13 13 chr1 117543216 117543528 -125120825 + AluJb SINE Alu 1 312 0 24 53 0 0 chr1 117543659 117543697 -125120656 + AT_rich Low_complexity Low_complexity 1 38 0 492 102 0 57 chr1 117543761 117543849 -125120504 - L1PA13 LINE L1 -15 6148 6066 340 255 29 20 chr1 117544337 117544439 -125119914 - MIR3 SINE MIR -23 185 83 189 107 0 0 chr1 117544530 117544558 -125119795 + (T)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr1 117544910 117544934 -125119419 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 900 161 0 7 chr1 117545410 117545559 -125118794 - AluSx SINE Alu 0 309 162 2233 107 3 0 chr1 117545699 117545997 -125118356 + AluSx SINE Alu 1 299 -13 400 228 22 73 chr1 117546131 117546173 -125118180 + L1ME3 LINE L1 6034 6077 -85 210 37 0 0 chr1 117546173 117546200 -125118153 + (TG)n Simple_repeat Simple_repeat 1 27 0 400 228 22 73 chr1 117546200 117546212 -125118141 + L1ME3 LINE L1 6077 6088 -74 2251 131 24 0 chr1 117546212 117546548 -125117805 + MER2 DNA MER2_type 1 344 0 400 228 22 73 chr1 117546548 117546628 -125117725 + L1ME3 LINE L1 6088 6162 0 1300 186 125 0 chr1 117546911 117547190 -125117163 - L1MD3 LINE L1 -24 7971 7658 2291 102 0 0 chr1 117547192 117547495 -125116858 - AluSc SINE Alu -6 303 1 1342 109 6 0 chr1 117547498 117547672 -125116681 - AluSx SINE Alu -137 175 1 1740 156 3 57 chr1 117548003 117548137 -125116216 + AluJo SINE Alu 11 151 -161 2401 86 3 3 chr1 117548137 117548439 -125115914 + AluSx SINE Alu 1 302 -10 1740 156 3 57 chr1 117548439 117548618 -125115735 + AluJo SINE Alu 151 307 -5 2075 126 11 0 chr1 117548651 117548936 -125115417 + AluSc SINE Alu 1 288 -21 993 107 0 0 chr1 117548936 117549085 -125115268 + (TA)n Simple_repeat Simple_repeat 2 150 0 1363 98 6 0 chr1 117549278 117549452 -125114901 - AluSp SINE Alu -138 175 1 615 214 0 0 chr1 117549452 117549564 -125114789 - AluJo/FLAM SINE Alu -179 133 22 1034 175 0 44 chr1 117549574 117549780 -125114573 - AluJo SINE Alu -8 304 108 785 165 0 15 chr1 117550016 117550149 -125114204 + AluJo/FLAM SINE Alu 1 131 -171 2217 99 0 0 chr1 117550152 117550474 -125113879 + AluSg SINE Alu 1 322 0 1081 60 0 46 chr1 117550497 117550648 -125113705 + Charlie3 DNA MER1_type 2563 2706 -4 2260 99 0 10 chr1 117551089 117551383 -125112970 + AluSx SINE Alu 1 291 -21 1669 163 45 7 chr1 117551408 117551697 -125112656 + AluJo SINE Alu 1 300 -12 335 178 41 14 chr1 117551720 117551793 -125112560 + L1MC5 LINE L1 7498 7572 -389 252 209 0 0 chr1 117551798 117551841 -125112512 + MLT1D LTR MaLR 1 43 -462 996 122 83 6 chr1 117551841 117551997 -125112356 + FRAM SINE Alu 1 165 -11 809 207 43 29 chr1 117551997 117552318 -125112035 + MLT1D LTR MaLR 33 399 -106 718 92 0 0 chr1 117552329 117552427 -125111926 - AluY SINE Alu -13 298 201 1412 126 0 5 chr1 117552528 117552727 -125111626 - AluSq SINE Alu -115 198 1 2188 108 0 0 chr1 117552734 117553056 -125111297 - AluSg SINE Alu 0 323 2 1563 164 42 42 chr1 117554054 117554364 -125109989 + AluJo SINE Alu 1 310 -2 2314 110 7 0 chr1 117554436 117554746 -125109607 + AluSx SINE Alu 1 312 0 2045 92 19 79 chr1 117555204 117555519 -125108834 + AluSx SINE Alu 1 296 -16 1987 112 33 16 chr1 117555519 117555821 -125108532 + AluSg SINE Alu 1 308 -2 470 135 189 18 chr1 117555927 117556038 -125108315 - L1MA4 LINE L1 -1 6299 6170 1456 191 22 18 chr1 117556046 117556323 -125108030 - AluJo SINE Alu -30 282 5 216 0 0 0 chr1 117556542 117556566 -125107787 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2183 112 0 7 chr1 117556579 117556866 -125107487 - AluSx SINE Alu -27 285 1 2127 142 0 0 chr1 117556868 117557164 -125107189 - AluJo SINE Alu -16 296 1 195 261 0 0 chr1 117557326 117557372 -125106981 - L2 LINE L2 -17 3255 3210 1335 171 96 31 chr1 117557422 117557715 -125106638 + AluJo SINE Alu 1 312 0 23 33 0 0 chr1 117557872 117557902 -125106451 + AT_rich Low_complexity Low_complexity 1 30 0 2279 67 42 3 chr1 117557915 117558200 -125106153 - AluY SINE Alu -11 300 5 2419 82 3 0 chr1 117558208 117558513 -125105840 - AluSp SINE Alu -6 307 2 243 301 39 10 chr1 117558597 117558700 -125105653 + L3 LINE CR1 974 1079 -498 2195 72 7 4 chr1 117558703 117559004 -125105349 - AluY SINE Alu 0 304 3 671 78 0 0 chr1 117559010 117559100 -125105253 - AluSg/x SINE Alu -14 296 207 685 50 0 0 chr1 117559102 117559182 -125105171 - AluSc SINE Alu -142 167 88 1179 88 0 19 chr1 117559282 117559442 -125104911 + AluY SINE Alu 139 295 -16 1491 146 24 28 chr1 117559447 117559700 -125104653 + AluJb SINE Alu 1 252 -60 307 178 0 0 chr1 117559700 117559745 -125104608 - Alu SINE Alu -255 45 1 246 267 0 53 chr1 117560222 117560297 -125104056 - L2 LINE L2 -2 3270 3200 1382 110 181 13 chr1 117560682 117560909 -125103444 + AluSg1 SINE Alu 1 265 -44 259 91 0 182 chr1 117561015 117561061 -125103292 + L1MC5 LINE L1 7726 7758 -203 2096 141 7 0 chr1 117561061 117561367 -125102986 - AluSq SINE Alu -5 308 1 259 91 0 182 chr1 117561367 117561386 -125102967 + L1MC5 LINE L1 7758 7779 -182 21 36 0 0 chr1 117561433 117561461 -125102892 + AT_rich Low_complexity Low_complexity 1 28 0 954 163 14 68 chr1 117561612 117561768 -125102585 + MER3 DNA MER1_type 1 143 -66 2246 116 0 0 chr1 117561768 117562061 -125102292 - AluSx SINE Alu -19 293 1 954 163 14 68 chr1 117562061 117562125 -125102228 + MER3 DNA MER1_type 143 209 0 495 269 167 46 chr1 117562276 117562666 -125101687 + MLT1K LTR MaLR 140 576 -12 355 101 75 57 chr1 117562682 117562797 -125101556 + FLAM_A SINE Alu 16 79 -53 1464 87 0 0 chr1 117562981 117563164 -125101189 - AluSg SINE Alu -10 300 118 777 145 8 0 chr1 117563164 117563295 -125101058 - AluSg/q SINE Alu -1 312 181 676 59 0 12 chr1 117563289 117563374 -125100979 - AluSg SINE Alu -170 140 57 * 1296 120 5 26 chr1 117563374 117563566 -125100787 - AluSg SINE Alu -121 189 2 1706 165 11 7 chr1 117563567 117563728 -125100625 - AluSx SINE Alu -16 296 131 6746 71 14 12 chr1 117563728 117565285 -125099068 - SVA Other Other -760 1386 21 1706 165 11 7 chr1 117565285 117565401 -125098952 - AluSx SINE Alu -181 131 17 1790 152 33 0 chr1 117565434 117565710 -125098643 + AluJb SINE Alu 1 285 -27 2342 71 0 24 chr1 117566328 117566623 -125097730 + AluY SINE Alu 1 288 -23 245 228 18 0 chr1 117566654 117566711 -125097642 - L2 LINE L2 -7 3265 3208 2334 88 0 7 chr1 117567469 117567775 -125096578 + AluSc SINE Alu 1 304 -5 348 234 80 36 chr1 117568327 117568464 -125095889 - L1MC/D LINE L1 -795 5447 5305 27 0 0 0 chr1 117568577 117568604 -125095749 + AT_rich Low_complexity Low_complexity 1 27 0 1811 159 7 0 chr1 117568802 117569079 -125095274 + AluJo SINE Alu 1 279 -33 183 42 0 0 chr1 117569079 117569103 -125095250 + (CA)n Simple_repeat Simple_repeat 1 24 0 2389 94 7 0 chr1 117569234 117569542 -125094811 + AluSp SINE Alu 1 310 -3 2326 82 0 13 chr1 117570309 117570614 -125093739 - AluY SINE Alu -10 301 1 9062 86 2 1 chr1 117570768 117571985 -125092368 + L1P LINE L1 1496 2714 -3432 1739 167 38 3 chr1 117572254 117572547 -125091806 - AluJb SINE Alu -9 303 1 199 75 0 25 chr1 117572620 117572660 -125091693 - L2 LINE L2 0 3313 3275 548 221 95 128 chr1 117572706 117572725 -125091628 - L1ME LINE L1 -353 5809 5791 1676 167 77 37 chr1 117572725 117573049 -125091304 - MER1B DNA MER1_type 0 337 1 548 221 95 128 chr1 117573049 117573223 -125091130 - L1ME LINE L1 -371 5791 5613 2030 139 3 0 chr1 117573223 117573510 -125090843 - AluSq SINE Alu -19 294 7 548 221 95 128 chr1 117573510 117573580 -125090773 - L1ME LINE L1 -549 5613 5542 2221 122 0 3 chr1 117573580 117573884 -125090469 - AluSc SINE Alu -6 303 1 548 221 95 128 chr1 117573884 117574189 -125090164 - L1ME LINE L1 -620 5542 5258 2245 114 0 3 chr1 117574202 117574509 -125089844 - AluSg SINE Alu -4 306 1 2215 113 7 0 chr1 117574617 117574908 -125089445 - AluSx SINE Alu -19 293 1 216 0 0 0 chr1 117575169 117575193 -125089160 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1087 163 5 0 chr1 117575669 117575853 -125088500 - AluYa5 SINE Alu 0 311 127 1429 111 0 58 chr1 117575861 117576111 -125088242 - AluSg/x SINE Alu 0 324 87 350 196 143 58 chr1 117576699 117576823 -125087530 - L2 LINE L2 0 3313 3166 705 206 0 22 chr1 117576823 117576959 -125087394 + FLAM_A SINE Alu 1 133 0 350 196 143 58 chr1 117576959 117577023 -125087330 - L2 LINE L2 -147 3166 3109 2518 60 0 0 chr1 117577034 117577332 -125087021 - AluY SINE Alu -10 301 4 2317 89 0 7 chr1 117577467 117577769 -125086584 - AluY SINE Alu -11 300 1 2251 111 0 13 chr1 117578260 117578566 -125085787 - AluSx SINE Alu -10 302 1 2249 310 147 41 chr1 117578664 117578875 -125085478 - L2 LINE L2 -16 3297 3110 1685 146 0 4 chr1 117578875 117579136 -125085217 + AluJb SINE Alu 32 291 -21 2249 310 147 41 chr1 117579136 117579891 -125084462 - L2 LINE L2 -203 3110 2157 1918 133 3 7 chr1 117579891 117580193 -125084160 + AluSx SINE Alu 1 301 -11 2249 310 147 41 chr1 117580193 117580627 -125083726 - L2 LINE L2 -1156 2157 1771 377 222 278 7 chr1 117580631 117580775 -125083578 - MIR SINE MIR -78 184 2 1248 187 114 30 chr1 117582030 117582192 -125082161 + MER5C DNA MER1_type 1 148 -176 2270 78 0 10 chr1 117582192 117582488 -125081865 + AluY SINE Alu 1 293 -18 1248 187 114 30 chr1 117582488 117582624 -125081729 + MER5C DNA MER1_type 148 324 0 261 269 90 0 chr1 117582715 117582782 -125081571 - L2 LINE L2 0 3272 3200 3528 197 33 27 chr1 117583257 117583666 -125080687 - L1MB4 LINE L1 0 6180 5775 2218 104 7 0 chr1 117583666 117583974 -125080379 - AluSx SINE Alu -2 310 1 3528 197 33 27 chr1 117583974 117584413 -125079940 - L1MB4 LINE L1 -405 5775 5327 294 320 21 0 chr1 117584413 117584510 -125079843 + L2 LINE L2 3209 3307 -6 213 264 132 11 chr1 117584572 117584663 -125079690 - L2 LINE L2 -245 3027 2926 2333 75 0 0 chr1 117584665 117584958 -125079395 + AluY SINE Alu 2 294 -17 23 0 0 0 chr1 117585499 117585522 -125078831 + AT_rich Low_complexity Low_complexity 1 23 0 843 281 96 73 chr1 117585553 117586030 -125078323 + L2 LINE L2 2778 3270 -43 1939 129 7 0 chr1 117586030 117586316 -125078037 + AluSx SINE Alu 3 290 -22 843 281 96 73 chr1 117586316 117586362 -125077991 + L2 LINE L2 3270 3313 0 1991 110 17 3 chr1 117586413 117586724 -125077629 + AluSq SINE Alu 3 313 0 2131 109 0 7 chr1 117587127 117587430 -125076923 - AluSq SINE Alu -12 301 1 194 322 25 51 chr1 117587830 117587948 -125076405 + L3b LINE CR1 1124 1238 -345 26 64 0 0 chr1 117588994 117589041 -125075312 + AT_rich Low_complexity Low_complexity 1 47 0 7055 223 62 97 chr1 117589126 117589787 -125074566 - L1MA9 LINE L1 0 7272 6589 2087 122 0 3 chr1 117589787 117590091 -125074262 - AluSg SINE Alu -7 303 1 7055 223 62 97 chr1 117590091 117590730 -125073623 - L1MA9 LINE L1 -683 6589 5929 2037 126 0 0 chr1 117590730 117591024 -125073329 + AluSc SINE Alu 1 294 -15 7055 223 62 97 chr1 117591024 117591376 -125072977 - L1MA9 LINE L1 -1343 5929 5566 1228 186 65 11 chr1 117591376 117591639 -125072714 - AluJo SINE Alu -22 290 14 7055 223 62 97 chr1 117591639 117593574 -125070779 - L1MA9 LINE L1 -1706 5566 3565 1875 108 38 14 chr1 117593574 117593861 -125070492 + AluSg SINE Alu 1 294 -16 7055 223 62 97 chr1 117593861 117594314 -125070039 - L1MA9 LINE L1 -3707 3565 3298 2196 101 0 0 chr1 117594314 117594612 -125069741 + AluY SINE Alu 1 298 -13 7055 223 62 97 chr1 117594612 117594689 -125069664 - L1MA9 LINE L1 -3974 3298 3220 686 227 239 18 chr1 117594705 117595036 -125069317 - L1MA9 LINE L1 -5143 1887 1484 4377 144 33 63 chr1 117595270 117596157 -125068196 + L1MB2 LINE L1 5281 6140 -31 859 120 0 0 chr1 117597111 117597228 -125067125 + FLAM_C SINE Alu 1 117 -16 332 173 0 0 chr1 117597262 117597314 -125067039 + L1MC4 LINE L1 6652 6703 -1339 * 349 200 43 0 chr1 117597283 117597353 -125067000 + L1MCa LINE L1 1996 2068 -4358 * 378 273 23 0 chr1 117597330 117597418 -125066935 + L1MC4 LINE L1 6894 6983 -1339 313 233 17 0 chr1 117597391 117597451 -125066902 - L1MC4 LINE L1 -1340 6702 6642 * 1699 157 20 17 chr1 117597518 117597818 -125066535 + AluJb SINE Alu 1 301 -11 1269 144 0 104 chr1 117597847 117598118 -125066235 - AluSp SINE Alu 0 304 60 2161 94 10 13 chr1 117598395 117598702 -125065651 + AluSx SINE Alu 1 306 -6 556 116 151 7 chr1 117599223 117599369 -125064984 - Charlie5 DNA MER1_type 0 2623 2457 1929 135 0 31 chr1 117599498 117599817 -125064536 + AluSg SINE Alu 1 309 -1 200 267 33 17 chr1 117600505 117600565 -125063788 - L3 LINE CR1 -10 1567 1507 1858 119 0 40 chr1 117601094 117601396 -125062957 + AluSx SINE Alu 1 290 -22 946 130 0 0 chr1 117601696 117601827 -125062526 + FLAM_C SINE Alu 1 131 -2 310 343 113 55 chr1 117602497 117602771 -125061582 + L2 LINE L2 2885 3174 -98 327 209 45 0 chr1 117602802 117602869 -125061484 - MIR SINE MIR -1 261 192 211 234 21 0 chr1 117602906 117602953 -125061400 - MIR SINE MIR -187 75 28 246 284 15 0 chr1 117603295 117603362 -125060991 - L2 LINE L2 -218 3054 2987 215 314 148 67 chr1 117603507 117604038 -125060315 - L2 LINE L2 -849 2465 1870 2271 100 3 3 chr1 117604038 117604349 -125060004 - AluSx SINE Alu -1 311 1 215 314 148 67 chr1 117604349 117604472 -125059881 - L2 LINE L2 -1444 1870 1758 750 199 15 0 chr1 117604856 117604987 -125059366 + FLAM_C SINE Alu 1 133 0 1434 192 55 0 chr1 117604994 117605265 -125059088 + AluJb SINE Alu 6 291 -21 2088 99 7 0 chr1 117605484 117605778 -125058575 + AluSg SINE Alu 1 296 -14 600 218 92 7 chr1 117606465 117606607 -125057746 + MER3 DNA MER1_type 2 155 -54 1883 124 3 49 chr1 117607402 117607708 -125056645 + AluSx SINE Alu 1 292 -20 1897 141 0 22 chr1 117607873 117608185 -125056168 + AluJb SINE Alu 2 306 -6 28 0 0 0 chr1 117608668 117608696 -125055657 + AT_rich Low_complexity Low_complexity 1 28 0 180 176 0 0 chr1 117613746 117613780 -125050573 + (TA)n Simple_repeat Simple_repeat 1 34 0 301 339 21 26 chr1 117615101 117615232 -125049121 + MER5A DNA MER1_type 4 141 -42 364 202 60 0 chr1 117615673 117615757 -125048596 + L1MC1 LINE L1 6244 6332 -1 274 293 105 58 chr1 117615878 117616069 -125048284 - MIR SINE MIR -27 235 36 772 229 83 5 chr1 117616169 117616374 -125047979 - MIR SINE MIR 0 262 42 508 264 57 9 chr1 117617852 117618046 -125046307 + MIR SINE MIR 3 200 -62 328 259 204 9 chr1 117618641 117618749 -125045604 + MIR3 SINE MIR 32 160 -48 199 171 49 0 chr1 117618886 117618927 -125045426 + L3 LINE CR1 1507 1549 -28 225 132 0 0 chr1 117619604 117619642 -125044711 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 1561 261 119 20 chr1 117619642 117620258 -125044095 - L2 LINE L2 -2 3311 2655 1678 277 51 14 chr1 117620268 117620759 -125043594 - L2 LINE L2 -1923 1391 883 414 244 13 0 chr1 117620852 117620930 -125043423 - MLT1J2 LTR MaLR -117 333 255 649 224 93 63 chr1 117621153 117621421 -125042932 - L2 LINE L2 -2433 881 606 614 182 7 0 chr1 117621761 117621915 -125042438 + (CA)n Simple_repeat Simple_repeat 1 155 0 2349 100 0 0 chr1 117622162 117622473 -125041880 - AluSq SINE Alu -2 311 1 2262 98 0 0 chr1 117627193 117627490 -125036863 + AluSx SINE Alu 1 297 -15 384 251 22 75 chr1 117628974 117629153 -125035200 - MIR SINE MIR -50 212 43 582 304 44 0 chr1 117629355 117629513 -125034840 + L2 LINE L2 3107 3271 -1 2015 127 0 0 chr1 117629858 117630150 -125034203 - AluSx SINE Alu -20 292 1 2176 63 11 7 chr1 117630160 117630470 -125033883 - AluY SINE Alu 0 311 1 958 104 7 0 chr1 117631949 117632084 -125032269 + AluSq/x SINE Alu 1 136 -176 2103 120 0 7 chr1 117632084 117632392 -125031961 + AluSx SINE Alu 1 306 -6 1331 211 131 50 chr1 117632559 117632995 -125031358 + MLT1H LTR MaLR 79 549 0 489 254 87 16 chr1 117633032 117633158 -125031195 - MIR SINE MIR -107 155 21 646 199 35 0 chr1 117633368 117633509 -125030844 + MER105 DNA DNA 11 156 -48 2130 113 3 0 chr1 117633925 117634234 -125030119 - AluY SINE Alu -1 310 1 2246 95 3 3 chr1 117634479 117634783 -125029570 + AluSx SINE Alu 1 304 -8 2998 143 78 40 chr1 117635139 117635410 -125028943 - MER4D LTR ERV1 0 903 644 2292 84 0 0 chr1 117635410 117635709 -125028644 + AluY SINE Alu 2 300 -11 2998 143 78 40 chr1 117635709 117636010 -125028343 - MER4D LTR ERV1 -259 644 309 1625 70 14 0 chr1 117636010 117636224 -125028129 + L1PB1 LINE L1 5927 6143 -8 2206 74 26 23 chr1 117636341 117636651 -125027702 + AluY SINE Alu 1 311 0 826 105 0 40 chr1 117636696 117636796 -125027557 - MER4D LTR ERV1 -579 324 228 3945 75 45 8 chr1 117636796 117637330 -125027023 + MER41A LTR ERV1 1 554 0 826 105 0 40 chr1 117637330 117637353 -125027000 - MER4D LTR ERV1 -675 228 206 1055 102 96 0 chr1 117637355 117637522 -125026831 + AluSx SINE Alu 1 183 -129 968 176 46 80 chr1 117637634 117637872 -125026481 - MER21B LTR ERV1 -629 234 5 254 318 0 0 chr1 117640422 117640488 -125023865 + L2 LINE L2 3207 3272 0 1879 124 10 3 chr1 117640584 117640897 -125023456 - AluSx SINE Alu 0 312 1 1663 160 48 7 chr1 117641521 117641814 -125022539 - AluJb SINE Alu -5 307 3 213 362 168 7 chr1 117641829 117641978 -125022375 + L2 LINE L2 2554 2726 -588 1534 114 4 0 chr1 117642054 117642281 -125022072 - Tigger5 DNA MER2_type 0 2323 2096 376 133 8 92 chr1 117642324 117642431 -125021922 - Charlie5 DNA MER1_type -37 2587 2489 183 42 0 0 chr1 117642431 117642455 -125021898 + (TA)n Simple_repeat Simple_repeat 1 24 0 376 133 8 92 chr1 117642455 117642467 -125021886 - Charlie5 DNA MER1_type -135 2489 2478 1826 154 3 0 chr1 117642468 117642753 -125021600 - AluJb SINE Alu -26 286 1 2379 65 0 7 chr1 117642803 117643111 -125021242 + AluY SINE Alu 1 306 -5 1203 98 0 0 chr1 117643111 117643274 -125021079 + AluSg/x SINE Alu 132 294 -16 474 239 13 64 chr1 117643282 117643454 -125020899 - MER33 DNA MER1_type -265 59 1 822 159 49 66 chr1 117643781 117643878 -125020475 - L1ME3 LINE L1 -21 6141 6044 2259 55 0 0 chr1 117643878 117644153 -125020200 + AluY SINE Alu 1 275 -36 473 76 0 43 chr1 117644156 117644248 -125020105 + (TA)n Simple_repeat Simple_repeat 2 89 0 822 159 49 66 chr1 117644248 117644372 -125019981 - L1ME3 LINE L1 -120 6042 5920 301 43 0 0 chr1 117644472 117644518 -125019835 + AluSp/q SINE Alu 255 300 -3 243 0 0 0 chr1 117644518 117644545 -125019808 + (TA)n Simple_repeat Simple_repeat 2 28 0 1719 150 39 0 chr1 117644620 117644900 -125019453 + AluJb SINE Alu 1 291 -21 3732 154 11 29 chr1 117644949 117645329 -125019024 - L1MB7 LINE L1 -19 6165 5801 1954 139 7 0 chr1 117645329 117645623 -125018730 + AluSx SINE Alu 1 296 -16 3732 154 11 29 chr1 117645623 117645942 -125018411 - L1MB7 LINE L1 -383 5801 5478 993 183 29 6 chr1 117646048 117646223 -125018130 - MER63A DNA MER1_type -31 179 1 220 216 0 0 chr1 117646341 117646392 -125017961 + T-rich Low_complexity Low_complexity 1 51 0 271 314 183 7 chr1 117646429 117646566 -125017787 + L2 LINE L2 2192 2352 -962 1870 146 7 0 chr1 117646614 117646909 -125017444 + AluJb SINE Alu 1 297 -15 2199 76 7 3 chr1 117647020 117647309 -125017044 + AluY SINE Alu 1 290 -21 2141 120 0 0 chr1 117647427 117647736 -125016617 + AluSx SINE Alu 1 309 -3 526 336 139 17 chr1 117647889 117648249 -125016104 + L2 LINE L2 2487 2890 -424 322 293 13 0 chr1 117648338 117648413 -125015940 - MER91C DNA MER1_type -1 139 64 180 0 0 0 chr1 117648460 117648480 -125015873 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1770 148 31 0 chr1 117648516 117648807 -125015546 + AluJb SINE Alu 1 300 -12 1763 157 33 0 chr1 117649211 117649510 -125014843 - AluJb SINE Alu -3 309 1 23 68 0 0 chr1 117649660 117649704 -125014649 + AT_rich Low_complexity Low_complexity 1 44 0 703 58 0 0 chr1 117649724 117649811 -125014542 - AluSp/q SINE Alu -9 304 218 216 0 0 0 chr1 117649985 117650009 -125014344 + (CTG)n Simple_repeat Simple_repeat 1 24 0 30 16 0 48 chr1 117650731 117650751 -125013602 + AT_rich Low_complexity Low_complexity 1 20 -40 2257 60 3 3 chr1 117650751 117651059 -125013294 + AluSp SINE Alu 1 308 0 30 16 0 48 chr1 117651059 117651075 -125013278 + AT_rich Low_complexity Low_complexity 20 35 -25 2079 128 0 0 chr1 117651075 117651373 -125012980 + AluSx SINE Alu 1 298 -14 30 16 0 48 chr1 117651373 117651397 -125012956 + AT_rich Low_complexity Low_complexity 35 60 0 2082 190 50 28 chr1 117652017 117652474 -125011879 - MLT1C LTR MaLR 0 467 1 430 299 32 32 chr1 117652776 117652930 -125011423 - MIR SINE MIR -89 173 20 698 191 9 129 chr1 117652946 117653036 -125011317 + MER5A DNA MER1_type 1 53 -136 1998 107 10 13 chr1 117653036 117653336 -125011017 + AluSg SINE Alu 1 299 -11 698 191 9 129 chr1 117653336 117653455 -125010898 + MER5A DNA MER1_type 53 185 -4 1836 165 0 0 chr1 117655336 117655627 -125008726 - AluJb SINE Alu -18 294 4 21 0 0 0 chr1 117655652 117655673 -125008680 + AT_rich Low_complexity Low_complexity 1 21 0 302 300 174 34 chr1 117655762 117656112 -125008241 + L2 LINE L2 2807 3205 -108 1995 131 0 0 chr1 117656132 117656422 -125007931 + AluSg SINE Alu 1 290 -20 369 314 65 0 chr1 117656940 117657064 -125007289 + L2 LINE L2 3141 3272 0 1903 220 53 7 chr1 117657155 117657592 -125006761 + MLT1F LTR MaLR 34 482 -60 790 184 0 0 chr1 117657596 117657721 -125006632 - FLAM_A SINE Alu -17 125 1 459 88 0 0 chr1 117657727 117657795 -125006558 + MLT1F1 LTR MaLR 496 563 -4 739 165 8 30 chr1 117657933 117658066 -125006287 + FLAM_C SINE Alu 2 131 -12 34 0 0 0 chr1 117658066 117658100 -125006253 + AT_rich Low_complexity Low_complexity 1 34 0 1759 226 82 5 chr1 117658318 117658747 -125005606 + MLT1C LTR MaLR 6 467 0 2202 85 0 16 chr1 117659034 117659351 -125005002 - AluSx SINE Alu 0 312 1 328 314 45 106 chr1 117659790 117660054 -125004299 + L3 LINE CR1 1308 1555 -22 1837 147 7 10 chr1 117660405 117660711 -125003642 + AluSx SINE Alu 1 305 -7 1701 166 16 3 chr1 117660714 117661022 -125003331 + AluJb SINE Alu 1 312 0 2188 119 0 3 chr1 117661064 117661374 -125002979 + AluSc SINE Alu 1 309 0 1989 133 0 0 chr1 117661807 117662100 -125002253 + AluSx SINE Alu 1 293 -19 360 247 0 22 chr1 117662114 117662203 -125002150 + HAL1b LINE L1 1246 1332 -16 233 147 0 0 chr1 117662204 117662238 -125002115 - Alu SINE Alu -99 34 1 183 301 131 20 chr1 117662320 117662473 -125001880 + L2 LINE L2 2966 3135 -178 1989 78 37 0 chr1 117662894 117663198 -125001155 + AluSc SINE Alu 1 314 0 859 113 0 35 chr1 117663206 117663347 -125001006 + AluSq/x SINE Alu 1 136 -176 1991 128 0 14 chr1 117663349 117663645 -125000708 + AluSx SINE Alu 1 292 -20 275 269 59 110 chr1 117663855 117664183 -125000170 + L1ME4a LINE L1 5492 5835 -286 968 201 6 0 chr1 117664183 117664352 -125000001 + FAM SINE Alu 1 170 -5 275 269 59 110 chr1 117664352 117664476 -124999877 + L1ME4a LINE L1 5835 5908 -213 1971 119 3 14 chr1 117664476 117664769 -124999584 + AluSx SINE Alu 1 290 -22 275 269 59 110 chr1 117664769 117664925 -124999428 + L1ME4a LINE L1 5908 6070 -51 229 235 71 12 chr1 117665326 117665411 -124998942 + MLT1H LTR MaLR 2 91 -458 505 226 113 6 chr1 117665464 117665623 -124998730 + MLT1H LTR MaLR 374 549 0 1681 142 82 0 chr1 117665635 117665903 -124998450 - AluJb SINE Alu -22 290 1 1416 213 0 7 chr1 117665905 117666201 -124998152 - AluJo SINE Alu -18 294 1 180 0 0 0 chr1 117666201 117666221 -124998132 + (T)n Simple_repeat Simple_repeat 1 20 0 1418 143 132 23 chr1 117666239 117666505 -124997848 + AluSg SINE Alu 1 295 -15 2205 104 0 0 chr1 117666506 117666804 -124997549 + AluSg SINE Alu 1 298 -12 268 163 0 0 chr1 117667006 117667049 -124997304 + FRAM/FAM SINE Alu 44 86 -80 1958 97 45 10 chr1 117667144 117667433 -124996920 + AluSq SINE Alu 1 299 -14 1909 130 78 35 chr1 117667941 117668148 -124996205 - MLT1A1 LTR MaLR -3 362 132 1867 139 4 0 chr1 117668148 117668462 -124995891 - AluSx SINE Alu 0 315 1 1909 130 78 35 chr1 117668462 117668598 -124995755 - MLT1A1 LTR MaLR -233 132 3 968 300 31 8 chr1 117668657 117669047 -124995306 + L1ME3A LINE L1 5553 5951 -219 1505 176 46 0 chr1 117669094 117669378 -124994975 + AluJb SINE Alu 1 297 -15 2240 98 3 0 chr1 117669381 117669686 -124994667 + AluSx SINE Alu 1 306 -6 8086 42 13 9 chr1 117670441 117671466 -124992887 - SVA Other Other -2 1384 356 2228 105 0 3 chr1 117671831 117672145 -124992208 - AluSq SINE Alu 0 313 1 265 250 26 13 chr1 117672330 117672406 -124991947 - L2 LINE L2 -1 3271 3195 2158 112 7 0 chr1 117672517 117672813 -124991540 + AluSx SINE Alu 1 298 -14 2148 96 0 25 chr1 117672953 117673267 -124991086 + AluSx SINE Alu 1 306 -6 298 320 94 62 chr1 117673287 117673462 -124990891 - L2 LINE L2 -406 2908 2740 2072 110 14 0 chr1 117673462 117673753 -124990600 + AluSq SINE Alu 1 295 -18 298 320 94 62 chr1 117673753 117673918 -124990435 - L2 LINE L2 -574 2740 2557 1071 198 41 62 chr1 117674049 117674195 -124990158 + MIR SINE MIR 1 142 -120 879 177 6 19 chr1 117674195 117674353 -124990000 + FRAM SINE Alu 1 156 -10 1071 198 41 62 chr1 117674353 117674449 -124989904 + MIR SINE MIR 142 238 -24 1632 149 11 4 chr1 117674528 117674820 -124989533 + AluJo SINE Alu 13 306 0 2068 120 0 0 chr1 117675883 117676188 -124988165 + AluSg SINE Alu 1 305 0 691 238 6 37 chr1 117676270 117676410 -124987943 - MIR SINE MIR -102 160 24 2543 43 0 0 chr1 117676410 117676710 -124987643 + AluY SINE Alu 1 300 -11 691 238 6 37 chr1 117676710 117676733 -124987620 - MIR SINE MIR -238 24 2 845 138 0 43 chr1 117677029 117677167 -124987186 + FLAM_C SINE Alu 2 133 0 22 35 0 0 chr1 117677202 117677231 -124987122 + AT_rich Low_complexity Low_complexity 1 29 0 872 97 0 8 chr1 117677341 117677475 -124986878 + (TTCC)n Simple_repeat Simple_repeat 4 136 0 1650 127 73 0 chr1 117677476 117677735 -124986618 - AluJo SINE Alu -33 279 2 759 150 0 0 chr1 117677794 117677914 -124986439 + FRAM SINE Alu 48 167 -9 2102 102 3 0 chr1 117677926 117678210 -124986143 + AluSp SINE Alu 1 285 -28 470 248 62 93 chr1 117679454 117679712 -124984641 - L2 LINE L2 -2 3270 3021 1107 192 113 56 chr1 117679717 117680107 -124984246 - L2 LINE L2 -7 3306 2895 374 255 47 9 chr1 117681794 117681900 -124982453 - L2 LINE L2 -3 3310 3201 25 0 0 0 chr1 117683806 117683831 -124980522 + AT_rich Low_complexity Low_complexity 1 25 0 186 118 0 0 chr1 117683959 117683993 -124980360 + (CA)n Simple_repeat Simple_repeat 2 35 0 456 289 67 44 chr1 117683996 117684176 -124980177 + MIR3 SINE MIR 1 184 -24 507 276 164 0 chr1 117684747 117684899 -124979454 - MER5A DNA MER1_type -2 187 11 280 277 170 0 chr1 117684980 117685074 -124979279 - MIR SINE MIR -96 166 57 391 223 54 20 chr1 117686003 117686151 -124978202 - L1ME4a LINE L1 -17 6104 5952 888 215 0 0 chr1 117687206 117687378 -124976975 + FRAM SINE Alu 1 172 -4 2204 70 3 7 chr1 117688662 117688984 -124975369 + AluSp SINE Alu 2 322 0 2216 82 0 3 chr1 117689047 117689340 -124975013 + AluY SINE Alu 1 292 -19 2115 107 3 0 chr1 117689709 117689999 -124974354 + AluSx SINE Alu 1 291 -21 2179 103 0 0 chr1 117690522 117690814 -124973539 - AluSc SINE Alu -17 292 1 1626 158 65 14 chr1 117690853 117691145 -124973208 + AluJo SINE Alu 1 307 -5 267 31 0 0 chr1 117691522 117691554 -124972799 + (TG)n Simple_repeat Simple_repeat 2 33 0 521 238 99 17 chr1 117692741 117692913 -124971440 + MIR SINE MIR 7 192 -70 1791 141 0 0 chr1 117695663 117695940 -124968413 + AluJo SINE Alu 13 289 -23 1979 107 0 24 chr1 117695944 117696253 -124968100 - AluSx SINE Alu 0 302 1 2143 99 7 0 chr1 117696279 117696573 -124967780 - AluSq SINE Alu -17 296 1 2521 45 0 13 chr1 117697428 117697738 -124966615 + AluY SINE Alu 1 306 -5 1850 154 3 0 chr1 117697763 117698055 -124966298 - AluJb SINE Alu -19 293 1 651 175 143 0 chr1 117698621 117698747 -124965606 + AluJo SINE Alu 2 145 -167 580 128 21 0 chr1 117699719 117699813 -124964540 - L1MB8 LINE L1 -1 6177 6082 2097 122 3 0 chr1 117699843 117700146 -124964207 - AluSx SINE Alu -8 304 1 186 43 0 0 chr1 117700361 117700384 -124963969 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1657 152 65 0 chr1 117701088 117701378 -124962975 - AluJb SINE Alu -2 310 2 283 130 22 0 chr1 117701630 117701676 -124962677 - U7 snRNA snRNA -4 59 13 836 174 0 42 chr1 117701676 117701843 -124962510 + AluJo SINE Alu 140 299 -13 350 262 20 54 chr1 117702120 117702269 -124962084 - MIR SINE MIR -32 230 87 185 308 75 28 chr1 117702286 117702393 -124961960 + L2 LINE L2 2848 2959 -354 1468 208 4 0 chr1 117702860 117703125 -124961228 + Tigger7 DNA MER2_type 2 267 -466 402 136 0 0 chr1 117703123 117703182 -124961171 + Tigger7 DNA MER2_type 2389 2447 -40 * 275 231 160 106 chr1 117703554 117703671 -124960682 - L2 LINE L2 -338 2976 2867 1400 174 3 44 chr1 117703671 117703964 -124960389 + AluJb SINE Alu 1 281 -31 222 37 0 0 chr1 117703964 117703991 -124960362 + (CA)n Simple_repeat Simple_repeat 1 27 0 275 231 160 106 chr1 117703991 117704128 -124960225 - L2 LINE L2 -446 2868 2707 198 343 40 20 chr1 117704422 117704521 -124959832 - L2 LINE L2 -3 3269 3169 246 254 34 0 chr1 117704651 117704710 -124959643 + MIR3 SINE MIR 101 161 -47 21 0 0 0 chr1 117704971 117704992 -124959361 + AT_rich Low_complexity Low_complexity 1 21 0 2051 131 3 0 chr1 117705166 117705463 -124958890 - AluSx SINE Alu -14 298 1 193 28 0 56 chr1 117706007 117706043 -124958310 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 2311 194 76 45 chr1 117706045 117706680 -124957673 - MER21B LTR ERV1 -44 819 126 5738 77 22 7 chr1 117706920 117708029 -124956324 + SVA Other Other 145 1385 -1 1374 49 0 22 chr1 117708044 117708227 -124956126 + AluY SINE Alu 118 296 -15 463 296 118 41 chr1 117708621 117708841 -124955512 - L3 LINE CR1 -3 1574 1338 207 299 138 0 chr1 117708913 117709021 -124955332 - MIR SINE MIR -62 146 20 1293 74 0 11 chr1 117709886 117710062 -124954291 - AluSg/x SINE Alu -2 308 135 1669 149 10 3 chr1 117710066 117710355 -124953998 - AluJb SINE Alu -17 295 5 1163 207 87 105 chr1 117710489 117710573 -124953780 + MER20B DNA MER1_type 190 274 -509 2342 81 0 7 chr1 117710573 117710883 -124953470 + AluSc SINE Alu 1 308 -1 1163 207 87 105 chr1 117710883 117711048 -124953305 + MER20B DNA MER1_type 274 440 -343 2557 115 37 21 chr1 117711048 117711483 -124952870 + LTR56 LTR ERV1 4 445 0 1163 207 87 105 chr1 117711483 117711736 -124952617 + MER20B DNA MER1_type 440 684 -99 1772 198 76 80 chr1 117711736 117712214 -124952139 - MLT1F1 LTR MaLR 0 567 92 2360 77 0 0 chr1 117712214 117712511 -124951842 + AluSg SINE Alu 1 297 -13 1772 198 76 80 chr1 117712511 117712603 -124951750 - MLT1F1 LTR MaLR -475 92 1 283 202 77 77 chr1 117712603 117712707 -124951646 + MER20B DNA MER1_type 679 782 -1 259 304 104 0 chr1 117712744 117712923 -124951430 + L1ME2 LINE L1 5734 5932 -232 2357 57 0 10 chr1 117713163 117713460 -124950893 + AluY SINE Alu 3 296 -15 218 267 17 103 chr1 117713651 117713767 -124950586 - L2 LINE L2 -569 2745 2640 894 105 0 0 chr1 117714008 117714132 -124950221 + AluSq/x SINE Alu 1 124 -189 207 0 0 0 chr1 117714145 117714168 -124950185 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 241 298 24 0 chr1 117714287 117714371 -124949982 + GA-rich Low_complexity Low_complexity 5 90 0 1556 107 4 74 chr1 117714413 117714684 -124949669 + AluSq SINE Alu 54 305 -8 882 306 0 21 chr1 117715221 117715463 -124948890 + MIR SINE MIR 15 251 -11 2250 83 7 0 chr1 117715469 117715770 -124948583 - AluSp SINE Alu -9 304 2 327 329 225 12 chr1 117715865 117716114 -124948239 - L2 LINE L2 -4 3268 2967 376 342 73 44 chr1 117716114 117716526 -124947827 + L2 LINE L2 2890 3313 0 205 330 107 10 chr1 117717164 117717267 -124947086 + L2 LINE L2 3169 3281 -32 1681 182 3 0 chr1 117717284 117717575 -124946778 - AluJb SINE Alu -15 297 6 2541 144 80 24 chr1 117717600 117718064 -124946289 - LTR2B LTR ERV1 0 490 1 315 198 250 17 chr1 117718075 117718191 -124946162 - MIR SINE MIR 0 262 120 2273 73 10 0 chr1 117718193 117718482 -124945871 - AluSc SINE Alu -17 292 1 2241 60 3 0 chr1 117718776 117719081 -124945272 + AluY SINE Alu 1 306 0 2066 114 3 0 chr1 117719095 117719384 -124944969 + AluSg SINE Alu 3 292 -18 1969 134 3 0 chr1 117719441 117719740 -124944613 - AluSx SINE Alu -12 300 1 1988 110 0 41 chr1 117719746 117720063 -124944290 - AluSx SINE Alu -6 306 3 2205 102 0 6 chr1 117720071 117720385 -124943968 - AluSx SINE Alu 0 312 1 2281 75 13 0 chr1 117720981 117721286 -124943067 - AluSp SINE Alu -4 309 1 1863 68 13 91 chr1 117721298 117721628 -124942725 - AluSx SINE Alu 0 306 1 2153 49 7 21 chr1 117722419 117722742 -124941611 - AluSp SINE Alu 0 319 1 1054 38 8 0 chr1 117722744 117722875 -124941478 - AluSp SINE Alu -181 132 1 691 157 0 0 chr1 117725158 117725266 -124939087 - FRAM SINE Alu -21 155 48 1927 153 0 0 chr1 117725788 117726083 -124938270 + AluJo SINE Alu 2 296 -16 1148 70 0 0 chr1 117726432 117726574 -124937779 + AluSq/x SINE Alu 1 142 -171 2216 88 7 0 chr1 117726575 117726872 -124937481 + AluSx SINE Alu 1 299 -13 331 269 7 14 chr1 117729712 117729853 -124934500 + (TA)n Simple_repeat Simple_repeat 2 141 0 733 118 10 0 chr1 117730011 117730113 -124934240 + AluSq/x SINE Alu 31 133 -179 480 118 0 0 chr1 117730114 117730190 -124934163 + AluS SINE Alu 233 308 -4 1635 172 3 30 chr1 117730650 117730799 -124933554 + AluJo SINE Alu 1 140 -172 2200 108 14 0 chr1 117730799 117731096 -124933257 + AluY SINE Alu 1 301 -10 1635 172 3 30 chr1 117731096 117731242 -124933111 + AluJo SINE Alu 140 288 -24 258 32 0 0 chr1 117731243 117731274 -124933079 + (CATA)n Simple_repeat Simple_repeat 3 33 0 2378 76 3 0 chr1 117731441 117731730 -124932623 + AluSp SINE Alu 1 290 -23 2356 90 0 0 chr1 117731735 117732034 -124932319 + AluSx SINE Alu 1 299 -13 2267 104 0 0 chr1 117732037 117732334 -124932019 + AluSg SINE Alu 1 297 -13 813 169 74 0 chr1 117732412 117732560 -124931793 + FRAM SINE Alu 1 159 -7 2210 112 3 6 chr1 117733383 117733696 -124930657 - AluJb SINE Alu 0 312 1 1078 157 12 0 chr1 117733706 117733872 -124930481 - AluJb SINE Alu -4 308 141 2601 37 10 3 chr1 117733908 117734208 -124930145 - AluY SINE Alu -9 302 1 186 308 90 0 chr1 117734342 117734420 -124929933 + MER5A DNA MER1_type 62 146 -43 2166 102 3 54 chr1 117734589 117734903 -124929450 - AluSx SINE Alu -14 298 1 2145 131 0 6 chr1 117735048 117735360 -124928993 - AluSq SINE Alu -3 310 1 2234 86 3 48 chr1 117735375 117735688 -124928665 - AluSg SINE Alu -11 299 1 2299 50 28 62 chr1 117736248 117736570 -124927783 - AluY SINE Alu 0 311 1 2182 111 10 0 chr1 117736574 117736863 -124927490 - AluSx SINE Alu -16 296 5 816 185 20 0 chr1 117737383 117737529 -124926824 - AluJb SINE Alu -23 289 141 247 208 117 52 chr1 117737917 117737994 -124926359 + L2 LINE L2 3188 3269 -3 2490 80 3 0 chr1 117738179 117738480 -124925873 + AluSg SINE Alu 1 302 -8 1485 178 93 0 chr1 117740183 117740452 -124923901 + AluJo SINE Alu 1 294 -18 2120 164 0 0 chr1 117740707 117741019 -124923334 - AluSx SINE Alu 0 312 1 316 221 73 0 chr1 117741615 117741683 -124922670 + L2 LINE L2 3186 3258 -14 1801 96 4 0 chr1 117741744 117741973 -124922380 + AluSq SINE Alu 2 231 -82 952 105 0 0 chr1 117742169 117742293 -124922060 + AluSq/x SINE Alu 1 124 -188 243 0 0 0 chr1 117742306 117742333 -124922020 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 255 294 11 25 chr1 117742452 117742574 -124921779 + GA-rich Low_complexity Low_complexity 1 120 0 1505 126 0 81 chr1 117742578 117742859 -124921494 + AluSx SINE Alu 54 312 0 2389 114 0 0 chr1 117742905 117743213 -124921140 - AluSx SINE Alu -4 308 1 1232 328 90 45 chr1 117743618 117744561 -124919792 + L2 LINE L2 1734 2767 -505 1916 137 7 23 chr1 117744561 117744860 -124919493 + AluJo SINE Alu 1 294 -18 1232 328 90 45 chr1 117744860 117745389 -124918964 + L2 LINE L2 2767 3271 -1 1996 116 0 11 chr1 117746484 117746769 -124917584 + AluJb SINE Alu 1 282 -30 864 77 0 0 chr1 117746769 117746886 -124917467 + (GA)n Simple_repeat Simple_repeat 2 118 0 762 162 8 0 chr1 117748879 117748996 -124915357 - FLAM_C SINE Alu -15 118 1 270 257 86 19 chr1 117749691 117749796 -124914557 + MIR SINE MIR 99 210 -52 2361 108 0 13 chr1 117750103 117750418 -124913935 - AluSx SINE Alu -1 311 1 695 245 27 27 chr1 117750964 117751152 -124913201 + MIR SINE MIR 68 255 -7 2354 113 10 0 chr1 117751276 117751586 -124912767 + AluSq SINE Alu 1 313 0 184 238 109 89 chr1 117751659 117751760 -124912593 - L2 LINE L2 -298 2974 2872 262 337 85 41 chr1 117751801 117752190 -124912163 - L2 LINE L2 -544 2770 2365 2376 104 3 0 chr1 117752323 117752631 -124911722 - AluSx SINE Alu -3 309 1 1660 173 46 0 chr1 117752634 117752918 -124911435 - AluJb SINE Alu -15 297 1 908 300 31 8 chr1 117752965 117753355 -124910998 - L1ME3A LINE L1 -219 5951 5553 787 104 148 0 chr1 117753414 117753549 -124910804 + MLT1A1 LTR MaLR 3 157 -208 1028 122 0 0 chr1 117753550 117753689 -124910664 + AluSq/x SINE Alu 1 139 -174 2232 108 0 3 chr1 117753850 117754147 -124910206 - AluY SINE Alu -14 297 2 2291 229 38 49 chr1 117754148 117754362 -124909991 - L1ME3 LINE L1 -274 5888 5673 712 146 63 0 chr1 117754362 117754520 -124909833 - L1MA7 LINE L1 0 6291 6124 2291 229 38 49 chr1 117754520 117755299 -124909054 - L1ME3 LINE L1 -489 5673 4920 1246 238 191 21 chr1 117755297 117755387 -124908966 + L1M4 LINE L1 3944 4017 -2129 * 2512 94 0 0 chr1 117755387 117755694 -124908659 - AluSc SINE Alu -2 307 1 1246 238 191 21 chr1 117755694 117756121 -124908232 + L1M4 LINE L1 4017 4549 -1597 1501 147 104 88 chr1 117756143 117756308 -124908045 - AluJb SINE Alu 0 312 138 279 0 0 0 chr1 117756308 117756339 -124908014 + (TA)n Simple_repeat Simple_repeat 2 32 0 1501 147 104 88 chr1 117756339 117756480 -124907873 - AluJb SINE Alu -174 138 1 1523 183 140 0 chr1 117756534 117756884 -124907469 - L1MD2 LINE L1 -21 6338 5940 1954 161 0 17 chr1 117757044 117757343 -124907010 + AluJo SINE Alu 1 294 -18 2063 109 64 0 chr1 117757856 117758139 -124906214 + AluSq SINE Alu 1 301 -12 319 239 67 28 chr1 117758726 117758836 -124905517 + MIR SINE MIR 58 176 -64 195 241 19 19 chr1 117758912 117758966 -124905387 + L2 LINE L2 3216 3269 -3 254 341 65 0 chr1 117758979 117759117 -124905236 - L3b LINE CR1 -291 1292 1146 1586 186 7 42 chr1 117759131 117759437 -124904916 + AluJo SINE Alu 1 295 -17 212 374 84 0 chr1 117760003 117760134 -124904219 - MIR3 SINE MIR -22 186 45 1082 157 76 30 chr1 117760310 117760507 -124903846 - AluJo SINE Alu -13 299 94 1320 198 41 64 chr1 117760661 117760975 -124903378 - AluJo SINE Alu -5 307 1 32 0 0 0 chr1 117760975 117761007 -124903346 + AT_rich Low_complexity Low_complexity 1 32 0 363 236 12 20 chr1 117761007 117761079 -124903274 - L1MCa LINE L1 -1339 6983 6912 742 203 0 0 chr1 117761079 117761212 -124903141 - FLAM_A SINE Alu 0 133 1 363 236 12 20 chr1 117761212 117761238 -124903115 - L1MCa LINE L1 -1410 6912 1994 2294 110 3 10 chr1 117761312 117761621 -124902732 - AluSg SINE Alu -3 307 1 2019 113 9 60 chr1 117761948 117762267 -124902086 + AluSx SINE Alu 1 303 -9 211 324 48 50 chr1 117762303 117762527 -124901826 - MIR SINE MIR -19 243 25 1973 137 19 23 chr1 117764858 117765165 -124899188 + AluJb SINE Alu 6 311 -1 33 0 0 0 chr1 117765394 117765427 -124898926 + AT_rich Low_complexity Low_complexity 1 33 0 196 333 48 0 chr1 117765597 117765681 -124898672 - L2 LINE L2 -73 3199 3112 657 164 302 0 chr1 117766185 117766344 -124898009 + MER3 DNA MER1_type 3 209 0 741 200 21 0 chr1 117767354 117767494 -124896859 + MER3 DNA MER1_type 4 146 -63 867 179 0 14 chr1 117767494 117767639 -124896714 - FLAM_C SINE Alu 0 143 1 22 0 0 0 chr1 117767813 117767835 -124896518 + AT_rich Low_complexity Low_complexity 1 22 0 349 332 108 23 chr1 117767882 117768013 -124896340 - L1ME4a LINE L1 -96 6025 5868 2316 93 3 40 chr1 117768013 117768191 -124896162 - AluSx SINE Alu 0 312 150 2120 136 0 29 chr1 117768191 117768507 -124895846 - AluSx SINE Alu -5 307 1 2316 93 3 40 chr1 117768507 117768652 -124895701 - AluSx SINE Alu -162 150 1 349 332 108 23 chr1 117768652 117768734 -124895619 - L1ME4a LINE L1 -253 5868 5794 186 361 34 42 chr1 117768831 117768950 -124895403 + L2 LINE L2 3147 3264 -8 2361 110 0 0 chr1 117769012 117769313 -124895040 + AluSx SINE Alu 1 301 -11 675 259 61 76 chr1 117769900 117770162 -124894191 + MIR SINE MIR 4 261 -1 284 265 84 0 chr1 117774326 117774409 -124889944 - L2 LINE L2 -13 3259 3170 2190 99 0 3 chr1 117775371 117775654 -124888699 + AluSx SINE Alu 22 303 -9 197 299 48 58 chr1 117777066 117777234 -124887119 + L2 LINE L2 2855 3022 -250 2464 89 3 0 chr1 117777234 117777537 -124886816 - AluSp SINE Alu -9 304 1 197 299 48 58 chr1 117777537 117777575 -124886778 + L2 LINE L2 3022 3059 -213 191 36 36 0 chr1 117778177 117778205 -124886148 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 2155 140 7 0 chr1 117778212 117778519 -124885834 - AluSx SINE Alu -3 309 1 379 267 59 30 chr1 117778524 117778659 -124885694 - L2 LINE L2 0 3272 3134 442 312 134 16 chr1 117778722 117778908 -124885445 - L2 LINE L2 -399 2915 2708 322 317 153 15 chr1 117778955 117779223 -124885130 + L1MC4 LINE L1 7505 7809 -233 405 81 0 0 chr1 117779279 117779341 -124885012 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 2379 100 3 0 chr1 117779464 117779765 -124884588 + AluSg SINE Alu 1 302 -8 1243 154 108 66 chr1 117779892 117780178 -124884175 + AluJo SINE Alu 3 300 -12 491 248 10 0 chr1 117780958 117781059 -124883294 + MIR SINE MIR 6 107 -155 206 320 115 0 chr1 117781354 117781432 -124882921 + MIR3 SINE MIR 96 182 -26 270 241 46 35 chr1 117782337 117782424 -124881929 - L3b LINE CR1 -217 1366 1279 353 283 113 38 chr1 117782713 117782872 -124881481 - MIR3 SINE MIR -8 200 30 251 234 0 47 chr1 117783893 117784021 -124880332 + G-rich Low_complexity Low_complexity 4 125 0 25 0 0 0 chr1 117784106 117784131 -124880222 + GC_rich Low_complexity Low_complexity 1 25 0 282 160 0 0 chr1 117784449 117784499 -124879854 + (CTG)n Simple_repeat Simple_repeat 3 52 0 180 0 0 0 chr1 117790982 117791002 -124873351 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2076 78 0 61 chr1 117791003 117791299 -124873054 - AluSg SINE Alu -32 278 1 1774 162 21 0 chr1 117791423 117791713 -124872640 + AluJo SINE Alu 10 305 -7 21 0 0 0 chr1 117793038 117793059 -124871294 + GC_rich Low_complexity Low_complexity 1 21 0 715 215 48 0 chr1 117793648 117793821 -124870532 + MIR SINE MIR 17 197 -65 210 241 51 51 chr1 117793880 117793959 -124870394 - MIR SINE MIR -96 112 34 212 244 0 0 chr1 117796499 117796544 -124867809 + (TG)n Simple_repeat Simple_repeat 1 45 0 251 248 106 53 chr1 117798977 117799090 -124865263 + MIR3 SINE MIR 12 130 -78 1638 83 76 76 chr1 117800743 117801052 -124863301 - AluSg SINE Alu 0 313 5 2210 94 0 10 chr1 117801067 117801364 -124862989 - AluSc SINE Alu -15 294 1 216 97 0 0 chr1 117807259 117807290 -124857063 + (GGA)n Simple_repeat Simple_repeat 2 32 0 22 56 0 0 chr1 117807890 117807926 -124856427 + GC_rich Low_complexity Low_complexity 1 36 0 797 172 23 0 chr1 117810694 117810822 -124853531 - FLAM_C SINE Alu -12 131 1 2169 117 0 7 chr1 117810873 117811173 -124853180 + AluSx SINE Alu 1 298 -14 1896 131 10 3 chr1 117811236 117811534 -124852819 + AluJb SINE Alu 9 308 -4 651 270 0 25 chr1 117811550 117811713 -124852640 + MIR SINE MIR 98 256 -6 2270 103 3 3 chr1 117813255 117813567 -124850786 + AluSp SINE Alu 1 312 -1 2186 103 0 7 chr1 117813577 117813877 -124850476 + AluSx SINE Alu 1 298 -14 210 224 75 119 chr1 117815766 117815900 -124848453 - MIR SINE MIR -12 250 123 205 245 0 20 chr1 117816985 117817034 -124847319 + CT-rich Low_complexity Low_complexity 2 49 0 4368 114 18 2 chr1 117818409 117819034 -124845319 + MER41B LTR ERV1 1 635 0 2756 133 39 17 chr1 117819034 117819148 -124845205 + MER41B LTR ERV1 108 218 -417 2471 53 0 0 chr1 117819148 117819448 -124844905 + AluY SINE Alu 1 300 -11 2756 133 39 17 chr1 117819448 117819850 -124844503 + MER41B LTR ERV1 218 635 0 1212 110 5 0 chr1 117820083 117820274 -124844079 + MER4B LTR ERV1 1 192 -418 2075 109 13 10 chr1 117820279 117820590 -124843763 + AluSx SINE Alu 1 312 0 446 305 30 60 chr1 117820768 117820816 -124843537 - HAL1 LINE L1 -879 1628 1580 2142 105 0 3 chr1 117820816 117821112 -124843241 + AluSq SINE Alu 5 299 -14 446 305 30 60 chr1 117821112 117821263 -124843090 - HAL1 LINE L1 -927 1580 1435 856 201 95 74 chr1 117821425 117821709 -124842644 + MLT1A1 LTR MaLR 76 365 0 318 202 116 78 chr1 117821709 117821727 -124842626 + L1MEd LINE L1 932 948 -5171 2192 116 0 7 chr1 117821727 117822030 -124842323 + AluSx SINE Alu 1 301 -11 318 202 116 78 chr1 117822030 117822140 -124842213 + L1MEd LINE L1 948 1065 -5054 442 143 0 0 chr1 117822150 117822213 -124842140 - AluJb SINE Alu -138 174 112 195 0 0 79 chr1 117822220 117822258 -124842095 + (AATAG)n Simple_repeat Simple_repeat 3 37 0 268 228 24 71 chr1 117822258 117822385 -124841968 + L1MEd LINE L1 1104 1224 -4895 1696 157 3 33 chr1 117822389 117822695 -124841658 + AluJb SINE Alu 7 303 -9 551 181 29 101 chr1 117822765 117822903 -124841450 - MLT1G LTR MaLR -382 178 21 948 165 6 34 chr1 117823102 117823264 -124841089 - AluJo SINE Alu -22 290 132 2095 112 0 33 chr1 117823264 117823569 -124840784 - AluSx SINE Alu -17 295 1 948 165 6 34 chr1 117823569 117823582 -124840771 - AluJo SINE Alu -180 132 120 2883 154 18 27 chr1 117823623 117824136 -124840217 + L1MC1 LINE L1 5820 6327 -6 210 91 0 0 chr1 117824136 117824169 -124840184 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 2322 76 0 25 chr1 117824173 117824490 -124839863 - AluY SINE Alu -2 309 1 2273 94 3 0 chr1 117824492 117824791 -124839562 - AluSx SINE Alu -12 300 1 532 237 24 125 chr1 117825938 117826233 -124838120 - L2 LINE L2 0 3313 3049 258 284 24 79 chr1 117826238 117826365 -124837988 + MIR SINE MIR 143 262 0 263 237 13 13 chr1 117827526 117827602 -124836751 + MER5A DNA MER1_type 89 164 -25 2038 133 3 3 chr1 117828226 117828526 -124835827 - AluJb SINE Alu -12 300 1 304 197 61 15 chr1 117828940 117829006 -124835347 + L1ME2 LINE L1 6096 6164 0 1932 138 6 28 chr1 117829015 117829334 -124835019 + AluJb SINE Alu 1 312 0 338 286 50 25 chr1 117829383 117829502 -124834851 + L1MC5 LINE L1 7787 7908 -53 869 215 237 13 chr1 117829594 117829966 -124834387 + L1ME4a LINE L1 5577 6031 -90 1418 80 85 5 chr1 117829970 117830207 -124834146 - AluSg SINE Alu 0 316 64 373 173 53 0 chr1 117830238 117830313 -124834040 + L1ME4a LINE L1 6034 6112 -9 2493 65 3 3 chr1 117830348 117830658 -124833695 + AluSp SINE Alu 1 310 -3 342 285 16 73 chr1 117830704 117830827 -124833526 - MIR3 SINE MIR -5 203 88 272 228 18 0 chr1 117831449 117831506 -124832847 + L2 LINE L2 3208 3265 -7 2392 55 3 10 chr1 117831537 117831827 -124832526 - AluY SINE Alu -23 288 1 41 21 0 0 chr1 117831906 117831954 -124832399 + AT_rich Low_complexity Low_complexity 1 48 0 37 18 0 18 chr1 117832196 117832210 -124832143 + AT_rich Low_complexity Low_complexity 1 14 -40 1711 198 0 7 chr1 117832210 117832498 -124831855 + AluJo SINE Alu 1 286 -26 37 18 0 18 chr1 117832498 117832538 -124831815 + AT_rich Low_complexity Low_complexity 14 54 0 1630 123 56 26 chr1 117832666 117832968 -124831385 - L1MB3 LINE L1 -7 6176 5866 385 251 51 63 chr1 117833173 117833348 -124831005 - MLT1K LTR MaLR -411 177 5 646 263 67 0 chr1 117833568 117833747 -124830606 + MIR SINE MIR 22 212 -50 528 343 47 0 chr1 117833768 117833940 -124830413 - MER91A DNA MER1_type -14 182 3 242 284 27 0 chr1 117833945 117834019 -124830334 - MIR SINE MIR -91 171 96 1933 174 0 0 chr1 117834244 117834537 -124829816 - AluJb SINE Alu -19 293 1 186 43 0 0 chr1 117834654 117834677 -124829676 + (T)n Simple_repeat Simple_repeat 1 23 0 2270 86 17 17 chr1 117835242 117835543 -124828810 - AluSq SINE Alu -12 301 1 428 261 65 39 chr1 117835997 117836150 -124828203 + MIR SINE MIR 46 202 -60 1055 161 0 44 chr1 117836499 117836679 -124827674 + AluJb SINE Alu 133 304 -8 539 196 26 98 chr1 117836690 117836884 -124827469 - MER104 DNA MER2_type 0 180 1 2557 78 0 0 chr1 117837480 117837787 -124826566 + AluSg SINE Alu 1 307 -3 225 175 53 35 chr1 117839063 117839120 -124825233 + L2 LINE L2 3254 3311 -2 234 274 94 77 chr1 117839200 117839317 -124825036 - L2 LINE L2 -20 3252 3134 205 215 0 108 chr1 117839319 117839384 -124824969 - L2 LINE L2 0 3272 3215 1758 181 7 23 chr1 117839742 117840046 -124824307 - AluJo SINE Alu -10 302 4 285 349 151 0 chr1 117840049 117840175 -124824178 - L2 LINE L2 -602 2712 2568 1039 179 82 4 chr1 117840387 117840644 -124823709 - L1MB7 LINE L1 0 6184 5908 22 35 0 0 chr1 117840665 117840694 -124823659 + AT_rich Low_complexity Low_complexity 1 29 0 1839 157 14 14 chr1 117841357 117841651 -124822702 + AluJo SINE Alu 1 294 -18 2170 94 16 13 chr1 117841653 117841962 -124822391 + AluSq SINE Alu 2 311 -2 2098 110 3 29 chr1 117842083 117842262 -124822091 - AluSx SINE Alu -1 311 142 2527 60 3 0 chr1 117842262 117842563 -124821790 - AluY SINE Alu -9 302 1 2098 110 3 29 chr1 117842563 117842692 -124821661 - AluSx SINE Alu -170 142 11 634 333 28 0 chr1 117842853 117843030 -124821323 - MIR SINE MIR -35 227 46 727 269 149 53 chr1 117843851 117843955 -124820398 + L2 LINE L2 2588 2681 -632 1961 148 7 7 chr1 117843955 117844258 -124820095 - AluJb SINE Alu -9 303 1 727 269 149 53 chr1 117844258 117844801 -124819552 + L2 LINE L2 2681 3299 -14 446 260 57 17 chr1 117845077 117845254 -124819099 + MIR SINE MIR 79 262 0 2180 106 0 30 chr1 117845591 117845894 -124818459 - AluSx SINE Alu -14 298 5 280 297 27 0 chr1 117846012 117846086 -124818267 - L2 LINE L2 -31 3241 3166 243 119 24 0 chr1 117846111 117846153 -124818200 + L1ME3 LINE L1 5483 5525 -2470 375 253 58 71 chr1 117846260 117846485 -124817868 + L1ME3 LINE L1 5727 5948 -214 338 304 112 51 chr1 117846809 117847163 -124817190 - L2 LINE L2 -217 3055 2622 392 280 148 11 chr1 117847362 117847557 -124816796 + MIR SINE MIR 28 252 -10 2225 108 0 14 chr1 117847567 117847864 -124816489 + AluSx SINE Alu 1 293 -19 2563 72 0 7 chr1 117849115 117849422 -124814931 + AluSp SINE Alu 2 306 -7 1786 118 8 23 chr1 117850317 117850580 -124813773 - AluJo SINE Alu -15 297 39 930 191 0 0 chr1 117850587 117850744 -124813609 + AluJb SINE Alu 156 312 0 757 179 22 147 chr1 117850750 117851023 -124813330 - L2 LINE L2 -6 3307 3069 2478 69 0 0 chr1 117851025 117851316 -124813037 - AluY SINE Alu -20 291 1 847 164 0 8 chr1 117851328 117851462 -124812891 - FLAM_C SINE Alu -10 133 1 2290 101 6 25 chr1 117851486 117851802 -124812551 - AluSq SINE Alu -3 310 1 2067 148 3 0 chr1 117852123 117852421 -124811932 + AluSx SINE Alu 1 299 -13 2178 90 4 7 chr1 117852866 117853145 -124811208 + AluSq SINE Alu 21 298 -15 1549 135 135 33 chr1 117853324 117853598 -124810755 + AluJb SINE Alu 1 302 0 864 207 0 24 chr1 117853966 117854130 -124810223 + FRAM SINE Alu 1 159 -17 2273 109 10 0 chr1 117854130 117854424 -124809929 + AluSg SINE Alu 1 297 -13 1876 158 4 0 chr1 117854555 117854834 -124809519 + AluJb SINE Alu 12 291 -21 680 256 53 96 chr1 117854834 117855463 -124808890 + L1ME LINE L1 299 902 -5168 259 289 40 0 chr1 117855465 117855541 -124808812 + FRAM SINE Alu 74 152 -14 1205 159 11 11 chr1 117855630 117855819 -124808534 + AluJb SINE Alu 87 275 -37 21 0 0 0 chr1 117856026 117856047 -124808306 + AT_rich Low_complexity Low_complexity 1 21 0 2129 121 0 7 chr1 117856174 117856471 -124807882 - AluSx SINE Alu -17 295 1 2187 88 46 0 chr1 117856590 117856874 -124807479 + AluSq SINE Alu 2 298 -15 2053 159 3 0 chr1 117856954 117857262 -124807091 + AluJb SINE Alu 1 309 -3 1501 157 8 32 chr1 117857267 117857516 -124806837 + AluJb SINE Alu 59 301 -11 1988 107 48 7 chr1 117857534 117857823 -124806530 + AluSx SINE Alu 1 301 -11 317 173 0 0 chr1 117857823 117857875 -124806478 + Alu SINE Alu 2 53 -248 992 139 60 74 chr1 117857892 117858107 -124806246 + MER20 DNA MER1_type 8 219 0 788 165 0 16 chr1 117858388 117858515 -124805838 + FLAM_C SINE Alu 5 129 -4 21 0 0 0 chr1 117858526 117858547 -124805806 + AT_rich Low_complexity Low_complexity 1 21 0 2386 64 0 79 chr1 117858654 117858983 -124805370 - AluY SINE Alu -8 303 1 207 100 0 0 chr1 117859244 117859274 -124805079 + (TTG)n Simple_repeat Simple_repeat 1 30 0 636 165 0 0 chr1 117859307 117859404 -124804949 - AluSp/q SINE Alu -12 301 205 310 221 93 58 chr1 117859583 117859667 -124804686 + L1ME LINE L1 5601 5681 -440 2274 130 0 0 chr1 117859667 117859967 -124804386 + AluSx SINE Alu 1 300 -12 310 221 93 58 chr1 117859967 117860054 -124804299 + L1ME LINE L1 5681 5778 -343 1344 121 0 0 chr1 117860076 117860249 -124804104 - AluSx SINE Alu -139 173 1 1466 205 0 11 chr1 117860295 117860573 -124803780 - AluSx SINE Alu -37 275 1 23 0 0 53 chr1 117860763 117860784 -124803569 + AT_rich Low_complexity Low_complexity 1 22 -14 2388 60 3 0 chr1 117860784 117861087 -124803266 + AluY SINE Alu 1 304 0 23 0 0 53 chr1 117861087 117861102 -124803251 + AT_rich Low_complexity Low_complexity 22 36 0 680 252 66 4 chr1 117861537 117861779 -124802574 + L1MC5 LINE L1 7661 7917 -44 180 324 59 0 chr1 117861857 117861925 -124802428 - L2 LINE L2 0 3313 3242 1775 181 3 7 chr1 117862031 117862335 -124802018 + AluJo SINE Alu 1 303 -9 197 268 42 14 chr1 117862446 117862517 -124801836 - MIR3 SINE MIR -8 200 128 899 200 11 22 chr1 117862691 117862876 -124801477 + AluJo SINE Alu 121 303 -9 1857 161 24 3 chr1 117863016 117863314 -124801039 + AluJb SINE Alu 1 304 -8 2397 106 0 6 chr1 117863314 117863626 -124800727 + AluSg SINE Alu 1 310 0 1938 157 0 13 chr1 117863908 117864207 -124800146 - AluJo SINE Alu -13 299 5 382 121 45 0 chr1 117864353 117864419 -124799934 - MER66A LTR ERV1 -140 338 270 2234 99 7 3 chr1 117864922 117865215 -124799138 - AluSx SINE Alu -18 294 1 2225 116 0 0 chr1 117865388 117865681 -124798672 - AluSg SINE Alu -17 293 1 234 108 0 27 chr1 117865706 117865743 -124798610 + Alu SINE Alu 22 57 -246 1228 163 14 9 chr1 117866042 117866257 -124798096 - AluJb SINE Alu -10 302 87 272 276 40 0 chr1 117866346 117866422 -124797931 - FRAM SINE Alu -14 152 74 680 256 53 96 chr1 117866424 117867053 -124797300 - L1ME LINE L1 -5168 902 299 1876 158 4 0 chr1 117867053 117867332 -124797021 - AluJb SINE Alu -21 291 12 2263 104 10 0 chr1 117867463 117867752 -124796601 - AluSg SINE Alu -12 298 7 197 158 0 26 chr1 117867958 117867996 -124796357 + MIR SINE MIR 25 61 -147 2370 93 7 0 chr1 117868019 117868321 -124796032 + AluSx SINE Alu 1 304 -8 204 227 13 40 chr1 117870252 117870327 -124794026 + (TCCG)n Simple_repeat Simple_repeat 2 74 0 322 111 0 28 chr1 117870492 117870564 -124793789 + (CGGGG)n Simple_repeat Simple_repeat 3 72 0 2340 77 0 10 chr1 117871121 117871419 -124792934 + AluSx SINE Alu 1 295 -17 2411 98 0 0 chr1 117872909 117873206 -124791147 - AluSx SINE Alu -15 297 1 2152 117 37 0 chr1 117877926 117878226 -124786127 + AluSx SINE Alu 1 311 -1 605 199 35 0 chr1 117878642 117878783 -124785570 - MER105 DNA DNA -48 156 11 491 254 87 16 chr1 117878993 117879119 -124785234 + MIR SINE MIR 21 155 -107 1187 211 131 50 chr1 117879156 117879592 -124784761 - MLT1H LTR MaLR 0 549 79 2268 121 0 6 chr1 117879754 117880067 -124784286 - AluSx SINE Alu -1 311 1 1024 104 7 0 chr1 117880067 117880202 -124784151 - AluSq/x SINE Alu -177 136 1 2277 66 11 7 chr1 117881681 117881960 -124782393 + AluY SINE Alu 1 283 -28 262 0 0 0 chr1 117881960 117881989 -124782364 + (TAAA)n Simple_repeat Simple_repeat 2 124 0 2175 123 0 0 chr1 117882005 117882297 -124782056 + AluSx SINE Alu 1 292 -20 582 304 44 0 chr1 117882640 117882798 -124781555 - L2 LINE L2 -1 3271 3107 366 240 23 80 chr1 117883000 117883174 -124781179 + MIR SINE MIR 43 206 -56 2259 95 3 3 chr1 117934832 117935136 -124729217 + AluSx SINE Alu 1 304 -8 2951 143 75 40 chr1 117935492 117935763 -124728590 - MER4D LTR ERV1 0 903 643 2310 84 0 0 chr1 117935763 117936062 -124728291 + AluY SINE Alu 2 300 -11 2951 143 75 40 chr1 117936062 117936365 -124727988 - MER4D LTR ERV1 -260 643 309 1639 70 14 0 chr1 117936365 117936579 -124727774 + L1PB1 LINE L1 5927 6143 -8 2210 89 26 0 chr1 117936696 117936999 -124727354 + AluY SINE Alu 1 311 0 1739 160 21 0 chr1 117938781 117939069 -124725284 - AluJo SINE Alu -9 303 10 2132 86 0 57 chr1 117939193 117939507 -124724846 + AluSg SINE Alu 1 296 -14 3123 116 11 2 chr1 117943476 117943950 -124720403 - MER41B LTR ERV1 -157 478 1 205 245 0 20 chr1 117945325 117945374 -124718979 + GA-rich Low_complexity Low_complexity 2 49 0 212 244 0 0 chr1 117946112 117946157 -124718196 + (CA)n Simple_repeat Simple_repeat 1 45 0 1618 127 4 0 chr1 117948193 117948437 -124715916 + AluY SINE Alu 66 310 -1 606 199 35 0 chr1 117948853 117948994 -124715359 - MER105 DNA DNA -48 156 11 423 244 109 3 chr1 117949187 117949317 -124715036 + MIR SINE MIR 3 143 -65 1281 210 131 46 chr1 117949370 117949804 -124714549 - MLT1H LTR MaLR 0 549 79 2125 125 0 6 chr1 117949966 117950279 -124714074 - AluSx SINE Alu -1 311 1 965 104 7 0 chr1 117950279 117950414 -124713939 - AluSq/x SINE Alu -176 136 1 2186 66 11 7 chr1 117951893 117952203 -124712150 + AluY SINE Alu 1 311 0 2365 70 0 0 chr1 117952213 117952513 -124711840 + AluY SINE Alu 1 300 -11 2426 132 42 10 chr1 117952513 117952912 -124711441 + MER41B LTR ERV1 218 632 -3 1747 114 4 4 chr1 117960777 117961032 -124703321 + AluSx SINE Alu 1 255 -57 777 160 0 0 chr1 117961133 117961252 -124703101 + AluSg/x SINE Alu 174 292 -20 524 310 44 0 chr1 117961597 117961755 -124702598 - L2 LINE L2 -1 3271 3107 358 263 22 64 chr1 117961957 117962136 -124702217 + MIR SINE MIR 43 212 -50 2360 181 56 4 chr1 117963467 117963953 -124700400 + L1MA9 LINE L1 5802 6312 0 26 64 0 0 chr1 117964038 117964085 -124700268 + AT_rich Low_complexity Low_complexity 1 47 0 2157 112 0 7 chr1 117965649 117965954 -124698399 + AluSq SINE Alu 1 303 -10 2013 110 17 3 chr1 117966354 117966665 -124697688 - AluSq SINE Alu 0 313 3 766 296 94 68 chr1 117966716 117966760 -124697593 - L2 LINE L2 0 3313 3272 1963 132 7 0 chr1 117966760 117967048 -124697305 - AluSx SINE Alu -20 292 3 766 296 94 68 chr1 117967048 117967525 -124696828 - L2 LINE L2 -41 3272 2778 23 0 0 0 chr1 117967556 117967579 -124696774 + AT_rich Low_complexity Low_complexity 1 23 0 2346 75 0 0 chr1 117968007 117968300 -124696053 - AluY SINE Alu -17 294 2 190 264 132 11 chr1 117968302 117968393 -124695960 + L2 LINE L2 2926 3027 -245 272 320 21 0 chr1 117968455 117968552 -124695801 - L2 LINE L2 -6 3307 3209 2089 201 27 30 chr1 117968552 117968992 -124695361 + L1MB4 LINE L1 5327 5766 -414 2249 107 7 0 chr1 117968992 117969302 -124695051 + AluSx SINE Alu 1 312 0 2089 201 27 30 chr1 117969302 117969422 -124694931 + L1MB4 LINE L1 5766 5885 -295 244 333 12 12 chr1 117972486 117972567 -124691786 - MIR3 SINE MIR -3 205 125 258 32 0 0 chr1 117972697 117972728 -124691625 + (TG)n Simple_repeat Simple_repeat 2 32 0 1786 120 68 0 chr1 117972729 117973030 -124691323 - AluSx SINE Alu 0 319 1 379 254 30 81 chr1 117973435 117973620 -124690733 - MIR3 SINE MIR 0 208 33 263 333 167 27 chr1 117975205 117975391 -124688962 - MIR SINE MIR -49 213 2 4316 234 85 57 chr1 117975487 117975581 -124688772 - L1MC4 LINE L1 0 8042 7952 2054 134 0 6 chr1 117975581 117975894 -124688459 - AluJb SINE Alu -1 311 1 4316 234 85 57 chr1 117975894 117976143 -124688210 - L1MC4 LINE L1 -90 7952 7712 1696 181 7 7 chr1 117976143 117976435 -124687918 - AluJb SINE Alu -14 298 7 4316 234 85 57 chr1 117976435 117976791 -124687562 - L1MC4 LINE L1 -330 7712 7368 2032 125 0 0 chr1 117976791 117977070 -124687283 - AluSx SINE Alu -33 279 1 4316 234 85 57 chr1 117977070 117977262 -124687091 - L1MC4 LINE L1 -674 7368 7183 2062 107 7 0 chr1 117977262 117977578 -124686775 - AluSq SINE Alu 0 318 1 4316 234 85 57 chr1 117977578 117977695 -124686658 - L1MC4 LINE L1 -859 7183 7071 201 74 0 0 chr1 117977695 117977722 -124686631 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4316 234 85 57 chr1 117977722 117977936 -124686417 - L1MC4 LINE L1 -971 7071 6865 206 31 0 31 chr1 117977936 117977968 -124686385 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4316 234 85 57 chr1 117977968 117978279 -124686074 - L1MC4 LINE L1 -1177 6865 6459 228 182 0 0 chr1 117978641 117978685 -124685668 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1625 245 42 40 chr1 117978809 117979258 -124685095 + MLT1J2 LTR MaLR 1 450 0 345 289 102 18 chr1 117980096 117980262 -124684091 - MIR3 SINE MIR -23 185 6 624 181 14 58 chr1 117981394 117981532 -124682821 + FLAM_A SINE Alu 2 133 0 185 196 214 0 chr1 117981771 117981827 -124682526 - L3 LINE CR1 -19 1558 1491 1800 141 0 39 chr1 117981977 117982283 -124682070 - AluSx SINE Alu -18 294 1 190 308 75 37 chr1 117982551 117982658 -124681695 - L3b LINE CR1 -18 1565 1455 2004 94 7 14 chr1 117982736 117983033 -124681320 + AluSg1 SINE Alu 1 295 -14 332 137 0 0 chr1 117983056 117983107 -124681246 + Alu SINE Alu 241 291 -9 531 305 37 5 chr1 117983131 117983321 -124681032 - L3 LINE CR1 -86 1491 1296 363 318 77 0 chr1 117984165 117984203 -124680150 - MER5A DNA MER1_type -1 188 154 2160 76 20 16 chr1 117984203 117984507 -124679846 + AluY SINE Alu 1 305 -6 363 318 77 0 chr1 117984507 117984638 -124679715 - MER5A DNA MER1_type -35 154 6 219 299 104 0 chr1 117984677 117984754 -124679599 - MER5A DNA MER1_type -48 141 57 264 275 100 0 chr1 117984761 117984841 -124679512 - MIR SINE MIR -108 154 67 1605 164 207 0 chr1 117984846 117985199 -124679154 + MSTA LTR MaLR 3 428 0 189 250 65 65 chr1 117985381 117985473 -124678880 + L2 LINE L2 3181 3272 0 * 363 305 122 0 chr1 117985470 117985601 -124678752 - L3 LINE CR1 -398 1179 1033 719 209 190 9 chr1 117985974 117986185 -124678168 - MIR SINE MIR -11 251 3 1934 153 3 7 chr1 117986597 117986898 -124677455 + AluJb SINE Alu 1 300 -12 1956 96 46 3 chr1 117987834 117988116 -124676237 + AluSc SINE Alu 1 294 -15 956 122 0 20 chr1 117988320 117988467 -124675886 - AluSg/x SINE Alu -16 296 153 1480 243 14 29 chr1 117989274 117989567 -124674786 + LTR16B LTR ERVL 124 413 -51 2216 148 20 45 chr1 117989567 117989965 -124674388 + MLT1B LTR MaLR 3 390 0 1480 243 14 29 chr1 117989965 117990017 -124674336 + LTR16B LTR ERVL 413 464 0 806 360 42 10 chr1 117990045 117990445 -124673908 + HERV16 LTR ERVL 38 450 -4546 1933 305 84 50 chr1 117990492 117991477 -124672876 + HERV16 LTR ERVL 517 1640 -3555 1112 195 76 96 chr1 117991555 117991857 -124672496 + MLT2B1 LTR ERVL 1 296 -118 349 336 21 0 chr1 117991869 117992012 -124672341 + HERVL LTR ERVL 3843 3988 -1666 2112 131 28 17 chr1 117992133 117992493 -124671860 - THE1B LTR MaLR 0 364 1 10984 103 42 1 chr1 117992493 117994010 -124670343 - THE1B-int LTR MaLR 0 1580 1 353 24 0 0 chr1 117994010 117994052 -124670301 - THE1B LTR MaLR 0 364 323 2106 116 7 0 chr1 117994052 117994355 -124669998 + AluSq SINE Alu 1 305 -8 299 200 42 11 chr1 117994484 117994579 -124669774 + L1MC5 LINE L1 7832 7929 -32 1803 229 106 18 chr1 117994600 117995098 -124669255 + MLT1F LTR MaLR 1 542 0 1899 144 27 0 chr1 117995211 117995510 -124668843 - AluJb SINE Alu 0 312 6 306 0 0 0 chr1 117996069 117996103 -124668250 + (TG)n Simple_repeat Simple_repeat 2 35 0 37 62 0 0 chr1 117996679 117996744 -124667609 + GC_rich Low_complexity Low_complexity 1 65 0 205 238 0 0 chr1 117997380 117997422 -124666931 + G-rich Low_complexity Low_complexity 2 43 0 189 0 0 0 chr1 118002017 118002038 -124662315 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1310 204 89 46 chr1 118002434 118002674 -124661679 - MER58B DNA MER1_type -2081 339 111 2426 55 0 0 chr1 118002674 118002967 -124661386 + AluY SINE Alu 1 293 -18 270 0 0 0 chr1 118002970 118003000 -124661353 + (TA)n Simple_repeat Simple_repeat 1 30 0 1310 204 89 46 chr1 118003000 118003079 -124661274 - MER58B DNA MER1_type -2310 110 2 301 295 57 25 chr1 118003662 118003784 -124660569 - 7SK RNA RNA -65 128 3 345 47 0 0 chr1 118005393 118005436 -124658917 + (TG)n Simple_repeat Simple_repeat 1 43 0 231 200 0 0 chr1 118006097 118006147 -124658206 - MIR SINE MIR -56 206 157 2215 82 31 0 chr1 118006832 118007125 -124657228 + AluSc SINE Alu 1 302 -7 261 265 122 0 chr1 118009696 118009794 -124654559 - MIR3 SINE MIR -18 190 81 2316 89 0 6 chr1 118011615 118011929 -124652424 - AluSx SINE Alu 0 312 1 23 54 0 0 chr1 118013768 118013805 -124650548 + AT_rich Low_complexity Low_complexity 1 37 0 243 309 45 27 chr1 118020745 118020855 -124643498 + MIR3 SINE MIR 65 176 -32 267 241 0 0 chr1 118021191 118021249 -124643104 + C-rich Low_complexity Low_complexity 4 61 0 233 135 19 0 chr1 118021854 118021906 -124642447 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 214 254 42 17 chr1 118022474 118022592 -124641761 + (CCG)n Simple_repeat Simple_repeat 3 123 0 28 0 0 0 chr1 118023601 118023629 -124640724 + GC_rich Low_complexity Low_complexity 1 28 0 286 249 48 79 chr1 118027556 118027785 -124636568 + L1MC4 LINE L1 7820 8041 -1 865 210 96 18 chr1 118029107 118029326 -124635027 - MIR SINE MIR 0 262 27 191 262 9 93 chr1 118030368 118030475 -124633878 - MIR SINE MIR -78 184 87 2130 88 3 55 chr1 118031843 118032171 -124632182 + AluSx SINE Alu 1 311 -1 627 251 15 74 chr1 118032453 118032569 -124631784 + MIR3 SINE MIR 15 115 -93 2122 91 0 11 chr1 118032569 118032856 -124631497 - AluY SINE Alu -14 297 14 627 251 15 74 chr1 118032856 118032942 -124631411 + MIR3 SINE MIR 115 205 -3 194 375 235 0 chr1 118033114 118033429 -124630924 - L3b LINE CR1 -93 1490 1102 1749 150 6 34 chr1 118033560 118033880 -124630473 + AluJo SINE Alu 1 311 -1 339 236 90 11 chr1 118034024 118034083 -124630270 - L2 LINE L2 -27 3286 3216 1548 169 104 7 chr1 118034083 118034362 -124629991 + AluJb SINE Alu 1 306 -6 339 236 90 11 chr1 118034362 118034391 -124629962 - L2 LINE L2 -97 3216 3191 414 202 0 11 chr1 118034393 118034477 -124629876 - MER3 DNA MER1_type 0 209 126 1706 148 53 3 chr1 118034477 118034761 -124629592 + AluJo SINE Alu 1 298 -14 1037 111 0 0 chr1 118034766 118034901 -124629452 + AluSq/x SINE Alu 1 135 -177 527 234 0 9 chr1 118034905 118035016 -124629337 - MER3 DNA MER1_type -89 120 11 644 289 16 5 chr1 118035234 118035421 -124628932 - MIR3 SINE MIR 0 208 20 209 273 173 36 chr1 118035433 118035572 -124628781 - L2 LINE L2 -2 3311 3154 1376 189 10 65 chr1 118036192 118036498 -124627855 + AluJo SINE Alu 6 294 -18 1569 141 61 4 chr1 118036622 118036885 -124627468 - AluJo SINE Alu 0 312 35 206 196 78 0 chr1 118038444 118038495 -124625858 - MIR SINE MIR -77 131 77 303 267 59 10 chr1 118038582 118038683 -124625670 - MIR SINE MIR -79 129 24 180 0 0 0 chr1 118039788 118039808 -124624545 + (GCTG)n Simple_repeat Simple_repeat 4 23 0 2295 89 0 3 chr1 118040425 118040716 -124623637 + AluSg SINE Alu 1 290 -20 2317 104 7 0 chr1 118040848 118041157 -124623196 + AluSx SINE Alu 1 311 -1 233 0 62 0 chr1 118041210 118041242 -124623111 + (GGGAA)n Simple_repeat Simple_repeat 1 34 0 238 255 10 78 chr1 118041719 118041821 -124622532 + MIR SINE MIR 112 206 -56 699 277 55 25 chr1 118042212 118042486 -124621867 - L1ME3A LINE L1 -234 5936 5655 317 186 240 78 chr1 118042545 118042672 -124621681 + MER112 DNA MER1_type 23 128 -132 678 168 26 111 chr1 118042672 118042749 -124621604 - MER69A DNA AcHobo -2351 175 93 1802 142 66 0 chr1 118042749 118043038 -124621315 + AluSx SINE Alu 3 310 -2 678 168 26 111 chr1 118043038 118043150 -124621203 - MER69A DNA AcHobo -2433 93 2 317 186 240 78 chr1 118043150 118043226 -124621127 + MER112 DNA MER1_type 128 259 -1 314 292 0 35 chr1 118043256 118043275 -124621078 - L1MA10 LINE L1 -57 6277 6259 3050 189 50 57 chr1 118043275 118044015 -124620338 - L1ME1 LINE L1 -63 6103 5369 255 31 0 0 chr1 118044015 118044047 -124620306 + (TC)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr1 118044046 118044070 -124620283 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 1072 169 0 0 chr1 118044071 118044243 -124620110 - AluSg/x SINE Alu -9 303 132 940 211 36 13 chr1 118044245 118044510 -124619843 - L1 LINE L1 -776 5370 5081 1678 74 0 0 chr1 118044510 118044713 -124619640 + AluSc SINE Alu 37 239 -70 3547 121 146 3 chr1 118044713 118045315 -124619038 + LTR12 LTR ERV1 1 688 0 337 164 0 0 chr1 118045315 118045376 -124618977 + AluSc SINE Alu 236 296 -3 452 204 139 15 chr1 118045463 118045600 -124618753 - FAM SINE Alu -7 42 1 1649 176 27 3 chr1 118045610 118045905 -124618448 - AluSx SINE Alu -10 302 1 1924 152 10 0 chr1 118045935 118046237 -124618116 + AluSx SINE Alu 1 305 -7 1204 203 67 13 chr1 118046239 118046554 -124617799 - L1 LINE L1 -1201 4945 4614 262 62 0 0 chr1 118046564 118046596 -124617757 + L1MA4 LINE L1 5912 5943 -354 1601 169 16 54 chr1 118046646 118046678 -124617675 + L1MA4 LINE L1 5943 5975 -325 1931 150 14 0 chr1 118046678 118046971 -124617382 + AluSx SINE Alu 1 297 -15 1601 169 16 54 chr1 118046971 118047310 -124617043 + L1MA4 LINE L1 5975 6300 0 828 228 16 0 chr1 118047318 118047511 -124616842 - L1 LINE L1 -1540 4606 4411 413 155 0 0 chr1 118047512 118047583 -124616770 + HSMAR2 DNA Mariner 3 73 -1229 24 0 0 0 chr1 118047583 118047607 -124616746 + AT_rich Low_complexity Low_complexity 1 24 0 954 173 0 0 chr1 118047608 118047758 -124616595 - AluJb SINE Alu -26 286 137 8385 111 12 13 chr1 118047759 118048540 -124615813 + HSMAR2 DNA Mariner 60 841 -461 1661 158 4 19 chr1 118048540 118048805 -124615548 - AluJb SINE Alu -4 308 48 8385 111 12 13 chr1 118048805 118049244 -124615109 + HSMAR2 DNA Mariner 841 1279 -23 2193 137 0 0 chr1 118049286 118049593 -124614760 - AluSx SINE Alu -5 307 1 328 102 0 0 chr1 118049777 118049826 -124614527 + AluSp/q SINE Alu 245 293 -10 1931 176 7 34 chr1 118049827 118050243 -124614110 - L1 LINE L1 -1840 4306 3902 12333 143 41 46 chr1 118050243 118052132 -124612221 + LTR27-int LTR ERV1 3261 5157 -60 2366 86 3 0 chr1 118052132 118052423 -124611930 + AluSx SINE Alu 1 292 -20 12333 143 41 46 chr1 118052423 118053206 -124611147 + LTR27-int LTR ERV1 5157 5157 -60 2409 63 10 3 chr1 118053206 118053507 -124610846 - AluY SINE Alu -8 303 1 12333 143 41 46 chr1 118053507 118053568 -124610785 + LTR27-int LTR ERV1 5157 5217 0 2584 164 42 6 chr1 118053569 118054075 -124610278 + LTR27 LTR ERV1 3 490 -11 2102 128 7 0 chr1 118054123 118054419 -124609934 - AluSq SINE Alu -15 298 1 5747 161 32 31 chr1 118054464 118054668 -124609685 - L1MC1 LINE L1 -6 6327 6125 1830 168 20 3 chr1 118054668 118054960 -124609393 - AluJo SINE Alu -15 297 1 5747 161 32 31 chr1 118054960 118055992 -124608361 - L1MC1 LINE L1 -208 6125 5099 1579 174 33 16 chr1 118055992 118056297 -124608056 + AluJo SINE Alu 1 310 -2 5747 161 32 31 chr1 118056297 118056571 -124607782 - L1MC1 LINE L1 -1234 5099 4827 559 155 155 35 chr1 118056573 118056689 -124607664 - FLAM_A SINE Alu -3 130 1 241 175 270 0 chr1 118056689 118056752 -124607601 - L1 LINE L1 -2300 3846 3767 230 150 25 25 chr1 118056757 118056837 -124607516 + (TA)n Simple_repeat Simple_repeat 2 81 0 725 238 19 33 chr1 118056838 118057048 -124607305 - L1 LINE L1 -2358 3788 3582 2339 91 0 16 chr1 118057645 118057952 -124606401 + AluSg SINE Alu 1 302 -8 650 305 41 12 chr1 118058044 118058290 -124606063 + MIR SINE MIR 8 260 -2 702 145 30 38 chr1 118058810 118058941 -124605412 + AluSq/x SINE Alu 2 131 -182 2284 118 0 0 chr1 118059092 118059389 -124604964 + AluSx SINE Alu 1 297 -15 730 164 16 0 chr1 118059643 118059771 -124604582 + AluJb SINE Alu 170 299 -13 836 270 118 104 chr1 118059858 118060050 -124604303 - MLT1K LTR MaLR 0 588 400 2122 145 0 0 chr1 118060050 118060354 -124603999 - AluSg SINE Alu -1 309 6 1834 133 34 17 chr1 118060358 118060651 -124603702 - AluJb SINE Alu -14 298 1 836 270 118 104 chr1 118060651 118060993 -124603360 - MLT1K LTR MaLR -190 398 41 977 291 88 48 chr1 118061549 118062090 -124602263 + MLT1K LTR MaLR 1 588 -27 1221 258 58 60 chr1 118062114 118062595 -124601758 - MER21B LTR ERV1 -149 714 235 1594 292 100 14 chr1 118063191 118063948 -124600405 + L2 LINE L2 2148 2969 -345 190 373 61 24 chr1 118064343 118064555 -124599798 - L2 LINE L2 -571 2743 2524 744 78 58 0 chr1 118064558 118064661 -124599692 - FLAM_C SINE Alu -11 132 24 3091 262 114 19 chr1 118064715 118066116 -124598237 - L2 LINE L2 -76 3237 1688 297 326 88 14 chr1 118066175 118066390 -124597963 - L2 LINE L2 -1016 2298 2068 224 304 0 29 chr1 118066599 118066668 -124597685 + L2 LINE L2 3188 3254 -18 1003 252 78 16 chr1 118066779 118067227 -124597126 - L1 LINE L1 -2596 3550 3075 946 221 77 14 chr1 118067235 118067443 -124596910 - LTR16B LTR ERVL -243 221 1 667 291 114 37 chr1 118067443 118067900 -124596453 - HERV16 LTR ERVL 0 4996 4505 992 214 86 53 chr1 118068126 118068178 -124596175 + MSTC LTR MaLR 1 50 -378 2453 71 0 0 chr1 118068178 118068473 -124595880 + AluY SINE Alu 1 295 -16 992 214 86 53 chr1 118068473 118068803 -124595550 + MSTC LTR MaLR 50 428 0 282 299 0 21 chr1 118068812 118068909 -124595444 - HERV16 LTR ERVL -612 4384 4290 1699 166 9 58 chr1 118068919 118069045 -124595308 + AluJb SINE Alu 1 132 -180 2039 89 3 46 chr1 118069045 118069348 -124595005 - AluY SINE Alu -21 290 1 1699 166 9 58 chr1 118069348 118069546 -124594807 + AluJb SINE Alu 132 309 -3 689 289 71 85 chr1 118069550 118070055 -124594298 - HERV16 LTR ERVL -1044 4610 4113 1422 174 19 108 chr1 118070060 118070466 -124593887 - MLT1B LTR MaLR -1 389 -52 2553 90 30 41 chr1 118070466 118070791 -124593562 + THE1B LTR MaLR 1 323 -41 2327 106 0 0 chr1 118070791 118071094 -124593259 - AluSg1 SINE Alu -6 303 1 2553 90 30 41 chr1 118071094 118071136 -124593217 + THE1B LTR MaLR 323 364 0 10760 102 43 1 chr1 118071136 118072653 -124591700 + THE1B-int LTR MaLR 1 1580 0 2427 105 19 11 chr1 118072653 118073014 -124591339 + THE1B LTR MaLR 1 364 0 1422 174 19 108 chr1 118073014 118073030 -124591323 - MLT1B LTR MaLR -371 19 3 318 336 21 0 chr1 118073134 118073277 -124591076 - HERV16 LTR ERVL -1666 3988 3843 1177 185 80 99 chr1 118073289 118073591 -124590762 - MLT2B1 LTR ERVL -118 296 1 1924 304 85 51 chr1 118073669 118074654 -124589699 - HERV16 LTR ERVL -3555 1441 517 775 338 56 19 chr1 118074728 118075101 -124589252 - HERV16 LTR ERVL -4572 424 38 1502 238 15 29 chr1 118075129 118075181 -124589172 - LTR16B LTR ERVL 0 464 413 2133 148 20 45 chr1 118075181 118075579 -124588774 - MLT1B LTR MaLR 0 390 3 1502 238 15 29 chr1 118075579 118075866 -124588487 - LTR16B LTR ERVL -51 413 130 22 0 0 0 chr1 118076548 118076570 -124587783 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr1 118076686 118076707 -124587646 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 2263 100 7 0 chr1 118076712 118077022 -124587331 + L1PA12 LINE L1 5857 6168 0 2393 138 12 7 chr1 118077153 118077559 -124586794 - L1MB4 LINE L1 -1 6179 5772 2315 104 0 0 chr1 118077873 118078171 -124586182 - AluSg1 SINE Alu -11 298 1 1167 143 164 49 chr1 118078679 118078966 -124585387 - L1MA9 LINE L1 -4 6308 5989 443 118 40 0 chr1 118079091 118079167 -124585186 - AluSp/q SINE Alu -9 304 226 359 250 36 0 chr1 118081165 118081249 -124583104 - L2 LINE L2 -24 3289 3203 574 85 24 0 chr1 118081254 118081336 -124583017 - AluSg1 SINE Alu -24 285 202 2548 51 0 0 chr1 118081336 118081629 -124582724 - AluSc SINE Alu -16 293 1 1543 103 5 5 chr1 118081629 118081841 -124582512 - AluSg1 SINE Alu -96 213 1 968 128 20 13 chr1 118081864 118082013 -124582340 + AluJo SINE Alu 4 153 -159 199 346 39 29 chr1 118082109 118082213 -124582140 - L2 LINE L2 -176 3096 2992 2049 88 0 0 chr1 118082920 118083180 -124581173 - AluSq SINE Alu -53 260 1 2132 108 35 3 chr1 118083568 118083856 -124580497 + AluSg SINE Alu 3 299 -11 29 0 0 0 chr1 118084386 118084415 -124579938 + AT_rich Low_complexity Low_complexity 1 29 0 940 105 8 0 chr1 118084848 118084981 -124579372 - AluSx SINE Alu -8 304 171 711 109 0 0 chr1 118084984 118085076 -124579277 - AluSx SINE Alu -219 93 2 1748 149 7 30 chr1 118085139 118085434 -124578919 - AluJo SINE Alu -23 289 2 968 176 51 0 chr1 118085435 118085611 -124578742 - MER20 DNA MER1_type -33 186 2 1772 229 95 67 chr1 118085752 118086341 -124578012 - HAL1 LINE L1 0 2507 1889 1930 135 3 30 chr1 118086341 118086510 -124577843 - AluJb SINE Alu -13 299 140 2318 91 14 0 chr1 118086510 118086807 -124577546 - AluSg SINE Alu -9 301 1 1930 135 3 30 chr1 118086807 118086940 -124577413 - AluJb SINE Alu -172 140 5 1772 229 95 67 chr1 118086940 118087142 -124577211 - HAL1 LINE L1 -618 1889 1694 2169 92 7 0 chr1 118087154 118087457 -124576896 - AluSp SINE Alu 0 305 1 267 189 131 16 chr1 118087461 118087583 -124576770 - HAL1 LINE L1 -1426 1081 946 743 161 48 24 chr1 118087588 118087712 -124576641 + FLAM_C SINE Alu 5 131 -2 1088 222 0 5 chr1 118087725 118087923 -124576430 + AluJo SINE Alu 14 210 -102 2161 137 0 0 chr1 118088139 118088432 -124575921 - AluSx SINE Alu -17 295 3 238 278 0 0 chr1 118088741 118088795 -124575558 + Tigger8 DNA MER2_type 609 662 -4 188 348 11 11 chr1 118089494 118089583 -124574770 + MIR SINE MIR 57 145 -63 347 290 142 12 chr1 118089887 118090049 -124574304 + MIR3 SINE MIR 18 200 -8 1612 195 95 22 chr1 118090605 118090795 -124573558 - MSTD LTR MaLR 0 396 221 2109 126 3 0 chr1 118090795 118091108 -124573245 + AluSx SINE Alu 1 312 0 1612 195 95 22 chr1 118091108 118091286 -124573067 - MSTD LTR MaLR -175 221 1 717 332 103 35 chr1 118091624 118092022 -124572331 + L2 LINE L2 2847 3271 -1 467 244 23 78 chr1 118092032 118092230 -124572123 - MIR SINE MIR -68 140 12 827 161 0 0 chr1 118092569 118092687 -124571666 + FLAM_C SINE Alu 1 118 -15 2155 123 7 13 chr1 118093007 118093315 -124571038 + AluSx SINE Alu 1 306 -6 853 228 0 7 chr1 118093343 118093492 -124570861 + FRAM SINE Alu 1 146 -30 31 44 0 0 chr1 118093492 118093537 -124570816 + AT_rich Low_complexity Low_complexity 1 45 0 2139 94 42 0 chr1 118093671 118093957 -124570396 + AluSg SINE Alu 1 298 -12 29 0 0 0 chr1 118094483 118094512 -124569841 + AT_rich Low_complexity Low_complexity 1 29 0 961 107 7 0 chr1 118094948 118095088 -124569265 - AluSx SINE Alu -1 309 169 711 109 0 0 chr1 118095091 118095183 -124569170 - AluSx SINE Alu -219 93 2 1748 149 7 30 chr1 118095246 118095541 -124568812 - AluJo SINE Alu -23 289 2 995 181 45 0 chr1 118095542 118095719 -124568634 - MER20 DNA MER1_type -33 186 2 1756 230 95 67 chr1 118095861 118096450 -124567903 - HAL1 LINE L1 0 2507 1889 1954 137 3 17 chr1 118096450 118096615 -124567738 - AluJb SINE Alu -13 299 138 2361 89 13 0 chr1 118096615 118096917 -124567436 - AluSg SINE Alu -4 306 1 1954 137 3 17 chr1 118096917 118097050 -124567303 - AluJb SINE Alu -174 138 5 1756 230 95 67 chr1 118097050 118097252 -124567101 - HAL1 LINE L1 -618 1889 1694 2169 92 7 0 chr1 118097264 118097567 -124566786 - AluSp SINE Alu 0 305 1 251 192 133 17 chr1 118097574 118097694 -124566659 - HAL1 LINE L1 -1428 1079 946 788 170 44 15 chr1 118097699 118097834 -124566519 + AluJb SINE Alu 5 143 -169 1509 205 4 4 chr1 118097836 118098104 -124566249 + AluJb SINE Alu 14 281 -31 543 170 21 0 chr1 118098224 118098318 -124566035 + AluJb SINE Alu 190 285 -27 2211 253 76 26 chr1 118098324 118098360 -124565993 - HAL1 LINE L1 -1814 693 660 665 222 71 68 chr1 118098360 118098428 -124565925 - MER112 DNA MER1_type -3 253 187 1720 161 50 4 chr1 118098428 118098708 -124565645 - AluJb SINE Alu -19 293 1 665 222 71 68 chr1 118098708 118098891 -124565462 - MER112 DNA MER1_type -69 187 1 2211 253 76 26 chr1 118098891 118099513 -124564840 - HAL1 LINE L1 -1847 660 2 1987 162 0 0 chr1 118099524 118099826 -124564527 - AluJb SINE Alu -10 302 1 225 250 266 8 chr1 118100506 118100634 -124563719 - MIR SINE MIR -4 258 98 27 49 0 0 chr1 118101013 118101054 -124563299 + AT_rich Low_complexity Low_complexity 1 41 0 357 264 99 94 chr1 118102103 118102466 -124561887 - L2 LINE L2 -9 3304 2940 418 340 130 24 chr1 118102618 118102871 -124561482 - L2 LINE L2 -569 2745 2466 335 314 25 17 chr1 118102897 118103015 -124561338 - L2 LINE L2 -998 2316 2198 898 144 17 58 chr1 118104860 118105033 -124559320 + FRAM SINE Alu 1 163 -13 1013 177 132 42 chr1 118105670 118106034 -124558319 - L1ME2 LINE L1 0 6164 5759 272 189 0 0 chr1 118106746 118106799 -124557554 - FAM SINE Alu 0 179 127 1158 200 9 9 chr1 118106799 118107019 -124557334 - AluJo SINE Alu -92 220 1 264 298 21 64 chr1 118107110 118107194 -124557159 - L2 LINE L2 -1407 1907 1830 2032 146 0 0 chr1 118107194 118107495 -124556858 + AluSx SINE Alu 1 301 -11 264 298 21 64 chr1 118107495 118107551 -124556802 - L2 LINE L2 -1484 1830 1773 2222 93 20 13 chr1 118107670 118107971 -124556382 + AluSx SINE Alu 5 307 -5 331 333 162 60 chr1 118108052 118108466 -124555887 - L2 LINE L2 -4 3268 2813 1906 132 0 20 chr1 118108717 118109013 -124555340 + AluSx SINE Alu 12 301 -11 2231 52 14 24 chr1 118109364 118109652 -124554701 + AluY SINE Alu 1 285 -26 869 215 108 0 chr1 118109751 118109965 -124554388 - L1ME2 LINE L1 -10 6154 5918 242 200 0 0 chr1 118109965 118110015 -124554338 - AluJo SINE Alu -3 317 268 1073 209 5 5 chr1 118110015 118110216 -124554137 - AluJo SINE Alu -92 220 20 278 214 135 11 chr1 118110222 118110311 -124554042 - L1MD2 LINE L1 -466 5893 5794 203 341 111 14 chr1 118110311 118110519 -124553834 + L2 LINE L2 1742 1969 -1345 264 339 112 37 chr1 118110519 118110902 -124553451 + L2 LINE L2 2328 2739 -575 1963 124 45 7 chr1 118110912 118111203 -124553150 + AluSx SINE Alu 1 302 -10 639 256 106 45 chr1 118111256 118111502 -124552851 - MIR SINE MIR -1 261 1 364 354 101 13 chr1 118111506 118111743 -124552610 + L2 LINE L2 2807 3064 -208 182 346 37 12 chr1 118111827 118111908 -124552445 + L2 LINE L2 3190 3272 0 1524 151 70 33 chr1 118112313 118112612 -124551741 - AluSx SINE Alu 0 309 1 33 0 0 0 chr1 118112978 118113011 -124551342 + AT_rich Low_complexity Low_complexity 1 33 0 1492 191 7 27 chr1 118113011 118113309 -124551044 - AluJb SINE Alu -20 292 1 2417 93 3 0 chr1 118113646 118113957 -124550396 + AluSp SINE Alu 1 312 -1 709 226 49 0 chr1 118114006 118114170 -124550183 - MIR SINE MIR -9 253 82 981 143 0 0 chr1 118114837 118114970 -124549383 - FLAM_C SINE Alu 0 133 1 346 278 62 49 chr1 118116185 118116329 -124548024 - L2 LINE L2 0 3313 3168 180 197 155 28 chr1 118116903 118116974 -124547379 - L2 LINE L2 -4 3268 3189 21 36 0 0 chr1 118117262 118117290 -124547063 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr1 118118689 118118728 -124545625 + GC_rich Low_complexity Low_complexity 1 39 0 31 44 0 0 chr1 118119203 118119248 -124545105 + GC_rich Low_complexity Low_complexity 1 45 0 502 152 0 0 chr1 118120482 118120548 -124543805 - AluJb SINE Alu -120 192 127 1687 158 50 4 chr1 118120558 118120718 -124543635 - AluJb SINE Alu -20 292 112 186 43 0 0 chr1 118120718 118120741 -124543612 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1687 158 50 4 chr1 118120741 118120859 -124543494 - AluJb SINE Alu -200 112 1 2255 135 0 0 chr1 118121131 118121443 -124542910 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 118122249 118122272 -124542081 + AT_rich Low_complexity Low_complexity 1 23 0 683 234 99 0 chr1 118122556 118122727 -124541626 + MIR SINE MIR 6 193 -69 217 156 65 0 chr1 118122738 118122815 -124541538 + (TA)n Simple_repeat Simple_repeat 1 82 0 235 227 45 30 chr1 118122879 118122945 -124541408 + MIR SINE MIR 196 262 0 265 224 129 24 chr1 118125164 118125249 -124539104 + MIR3 SINE MIR 111 204 -4 420 20 0 0 chr1 118125855 118125904 -124538449 + (CA)n Simple_repeat Simple_repeat 1 49 0 329 284 127 22 chr1 118126121 118126255 -124538098 + MIR SINE MIR 45 192 -70 198 128 77 26 chr1 118126301 118126340 -124538013 - L2 LINE L2 -2 3270 3230 180 171 0 49 chr1 118127151 118127192 -124537161 - MIR SINE MIR -131 77 39 197 169 43 26 chr1 118127345 118127395 -124536958 + MIR SINE MIR 105 151 -57 459 221 71 18 chr1 118127830 118127943 -124536410 + MIR SINE MIR 85 203 -59 1537 192 17 33 chr1 118128116 118128418 -124535935 + AluJo SINE Alu 1 297 -15 957 203 0 0 chr1 118128435 118128598 -124535755 + FAM SINE Alu 11 173 -12 2325 90 7 0 chr1 118128683 118128984 -124535369 - AluSg1 SINE Alu -6 303 1 31 44 0 0 chr1 118129118 118129163 -124535190 + AT_rich Low_complexity Low_complexity 1 45 0 853 228 0 7 chr1 118129163 118129312 -124535041 - FRAM SINE Alu -30 146 1 2155 123 7 13 chr1 118129340 118129648 -124534705 - AluSx SINE Alu -6 306 1 827 161 0 0 chr1 118129968 118130086 -124534267 - FLAM_C SINE Alu -15 118 1 467 244 23 78 chr1 118130425 118130623 -124533730 + MIR SINE MIR 12 189 -68 717 332 103 35 chr1 118130633 118131031 -124533322 - L2 LINE L2 -1 3271 2847 1612 195 95 22 chr1 118131369 118131547 -124532806 + MSTD LTR MaLR 1 165 -231 2109 126 3 0 chr1 118131547 118131860 -124532493 - AluSx SINE Alu 0 312 1 1612 195 95 22 chr1 118131860 118132050 -124532303 + MSTD LTR MaLR 165 396 0 347 290 142 12 chr1 118132606 118132768 -124531585 - MIR3 SINE MIR -8 200 18 188 348 11 11 chr1 118133072 118133161 -124531192 - MIR SINE MIR -63 145 57 238 278 0 0 chr1 118133861 118133915 -124530438 - Tigger8 DNA MER2_type -4 662 609 1857 166 0 7 chr1 118134224 118134519 -124529834 + AluSx SINE Alu 3 295 -17 1381 188 72 51 chr1 118134779 118135072 -124529281 - AluJo SINE Alu -13 299 1 233 203 94 0 chr1 118135112 118135176 -124529177 - L1ME LINE L1 -216 5905 5836 292 312 115 13 chr1 118135273 118135430 -124528923 + MIR SINE MIR 80 252 -10 533 286 44 48 chr1 118135431 118135696 -124528657 - L1ME LINE L1 -456 5665 5443 1398 135 8 62 chr1 118135719 118135963 -124528390 - AluJb SINE Alu -81 231 1 295 284 27 54 chr1 118135979 118136127 -124528226 - L1ME LINE L1 -2409 5399 5256 314 267 132 81 chr1 118136166 118136361 -124527992 - L1ME LINE L1 -880 5266 5046 1769 132 0 53 chr1 118136361 118136665 -124527688 - AluJo SINE Alu -24 288 1 314 267 132 81 chr1 118136665 118136802 -124527551 - L1ME LINE L1 -1100 5046 4917 1645 85 27 9 chr1 118137231 118137454 -124526899 - MER30 DNA MER1_type -1 229 3 2216 118 0 16 chr1 118137498 118137803 -124526550 - AluSx SINE Alu -12 300 1 567 0 0 0 chr1 118137896 118137959 -124526394 + (TA)n Simple_repeat Simple_repeat 1 63 0 1841 157 3 21 chr1 118138423 118138709 -124525644 - AluJo SINE Alu -31 281 1 211 232 14 14 chr1 118139451 118139520 -124524833 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 4150 120 56 32 chr1 118139772 118140309 -124524044 - L1PA16 LINE L1 -7 6159 5598 2442 35 42 3 chr1 118140309 118140598 -124523755 - AluY SINE Alu -11 300 1 4150 120 56 32 chr1 118140598 118140787 -124523566 - L1PA16 LINE L1 -568 5598 5415 658 287 52 34 chr1 118140787 118141101 -124523252 - L1MEc LINE L1 -4770 1626 1302 2089 52 78 4 chr1 118141101 118141371 -124522982 - AluY SINE Alu -14 297 8 658 287 52 34 chr1 118141371 118141464 -124522889 - L1MEc LINE L1 -5094 1302 1212 3657 214 45 63 chr1 118141554 118141674 -124522679 - L1MEc LINE L1 -5207 1189 1068 2029 133 4 0 chr1 118141674 118141978 -124522375 - AluSx SINE Alu 0 309 5 3657 214 45 63 chr1 118141978 118142040 -124522313 - L1MEc LINE L1 -5328 1068 1006 2038 116 9 56 chr1 118142040 118142359 -124521994 - AluSq SINE Alu 0 313 10 3657 214 45 63 chr1 118142359 118142560 -124521793 - L1MEc LINE L1 -5390 1006 803 1862 151 0 24 chr1 118142560 118142852 -124521501 - AluJo SINE Alu -22 290 6 3657 214 45 63 chr1 118142852 118143577 -124520776 - L1MEc LINE L1 -5593 803 98 912 95 0 0 chr1 118143578 118143718 -124520635 - AluSg/x SINE Alu 0 305 166 2290 55 66 0 chr1 118143733 118144022 -124520331 - AluY SINE Alu -3 308 1 216 0 0 0 chr1 118144032 118144056 -124520297 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 437 152 0 0 chr1 118144059 118144125 -124520228 - L1MEc LINE L1 -6295 101 36 290 244 71 0 chr1 118146238 118146365 -124517988 + L1ME4a LINE L1 5983 6118 -3 207 100 0 0 chr1 118146509 118146539 -124517814 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2171 102 0 7 chr1 118147336 118147621 -124516732 - AluSq SINE Alu -30 283 1 2415 98 0 0 chr1 118148342 118148647 -124515706 - AluSx SINE Alu -7 305 1 1865 128 21 7 chr1 118149399 118149709 -124514644 - AluJb SINE Alu 0 314 1 1797 147 10 23 chr1 118149735 118150034 -124514319 - AluJb SINE Alu -17 295 1 368 281 88 0 chr1 118150892 118151006 -124513347 + L2 LINE L2 3190 3313 0 23 0 0 0 chr1 118151039 118151062 -124513291 + AT_rich Low_complexity Low_complexity 1 23 0 1046 165 6 0 chr1 118151265 118151429 -124512924 + AluJb SINE Alu 130 294 -18 438 250 70 0 chr1 118151671 118151799 -124512554 + MIR SINE MIR 46 182 -80 180 219 0 0 chr1 118153133 118153174 -124511179 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 241 209 0 0 chr1 118153179 118153222 -124511131 + L1MC4 LINE L1 6659 6701 -1341 3053 219 6 30 chr1 118154289 118154954 -124509399 + MER82 DNA MER2_type 1 649 -4 2951 201 21 10 chr1 118155076 118155659 -124508694 + MLT-int LTR MaLR 74 662 -1073 294 290 0 70 chr1 118155922 118156022 -124508331 + MLT-int LTR MaLR 1288 1380 -355 1744 166 3 18 chr1 118156022 118156306 -124508047 + AluJo SINE Alu 1 280 -32 1259 167 0 5 chr1 118156310 118156514 -124507839 - AluJb SINE Alu -17 295 93 1654 139 41 0 chr1 118156592 118156858 -124507495 + MLT-int LTR MaLR 1386 1662 -73 2207 104 10 16 chr1 118156859 118157168 -124507185 + AluSx SINE Alu 1 307 -5 571 116 151 7 chr1 118157689 118157835 -124506518 - Charlie5 DNA MER1_type 0 2623 2457 2070 119 0 33 chr1 118157964 118158267 -124506086 + AluSg SINE Alu 1 293 -17 1980 116 0 40 chr1 118159560 118159862 -124504491 + AluSx SINE Alu 1 290 -22 940 130 0 0 chr1 118160162 118160293 -124504060 + FLAM_C SINE Alu 1 131 -2 269 295 13 70 chr1 118160963 118161119 -124503234 + L2 LINE L2 2885 3031 -241 300 209 45 0 chr1 118161268 118161335 -124503018 - MIR SINE MIR -1 261 192 195 234 21 0 chr1 118161372 118161419 -124502934 - MIR SINE MIR -187 75 28 223 284 15 0 chr1 118161761 118161828 -124502525 - L2 LINE L2 -218 3054 2987 2399 100 3 3 chr1 118162504 118162815 -124501538 - AluSx SINE Alu -1 311 1 893 162 15 0 chr1 118163322 118163458 -124500895 + AluJb SINE Alu 1 138 -174 1539 192 55 0 chr1 118163460 118163731 -124500622 + AluJb SINE Alu 6 291 -21 2213 99 7 0 chr1 118163950 118164244 -124500109 + AluSg SINE Alu 1 296 -14 600 218 92 7 chr1 118164931 118165073 -124499280 + MER3 DNA MER1_type 2 155 -54 2007 124 3 49 chr1 118165868 118166174 -124498179 + AluSx SINE Alu 1 292 -20 2021 141 0 22 chr1 118166339 118166651 -124497702 + AluJb SINE Alu 2 306 -6 28 0 0 0 chr1 118167134 118167162 -124497191 + AT_rich Low_complexity Low_complexity 1 28 0 180 176 0 0 chr1 118172212 118172246 -124492107 + (TA)n Simple_repeat Simple_repeat 1 34 0 266 338 5 12 chr1 118173591 118173698 -124490655 + MER5A DNA MER1_type 29 141 -42 363 202 60 0 chr1 118174139 118174223 -124490130 + L1MC1 LINE L1 6244 6332 -1 195 300 106 56 chr1 118174344 118174524 -124489829 - MIR SINE MIR -27 235 47 671 229 83 5 chr1 118174635 118174840 -124489513 - MIR SINE MIR 0 262 42 442 248 60 7 chr1 118176349 118176498 -124487855 + MIR SINE MIR 29 185 -77 288 237 227 0 chr1 118177118 118177215 -124487138 + MIR3 SINE MIR 42 160 -48 181 171 49 0 chr1 118177352 118177393 -124486960 + L3 LINE CR1 1507 1549 -28 225 132 0 0 chr1 118178070 118178108 -124486245 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 1368 261 119 20 chr1 118178108 118178724 -124485629 - L2 LINE L2 -2 3311 2655 1458 278 53 14 chr1 118178734 118179224 -124485129 - L2 LINE L2 -1923 1391 883 494 239 124 0 chr1 118179317 118179430 -124484923 - MLT1J2 LTR MaLR -117 333 207 551 224 93 63 chr1 118179619 118179887 -124484466 - L2 LINE L2 -2433 881 606 1841 157 3 21 chr1 118180664 118180950 -124483403 - AluJo SINE Alu -31 281 1 211 232 14 14 chr1 118181692 118181761 -124482592 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 4102 122 56 32 chr1 118182013 118182550 -124481803 - L1PA16 LINE L1 -7 6159 5598 2442 35 42 3 chr1 118182550 118182839 -124481514 - AluY SINE Alu -11 300 1 4102 122 56 32 chr1 118182839 118183028 -124481325 - L1PA16 LINE L1 -568 5598 5415 658 287 52 34 chr1 118183028 118183342 -124481011 - L1MEc LINE L1 -4770 1626 1302 2089 52 78 4 chr1 118183342 118183612 -124480741 - AluY SINE Alu -14 297 8 658 287 52 34 chr1 118183612 118183705 -124480648 - L1MEc LINE L1 -5094 1302 1212 3657 214 45 63 chr1 118183795 118183915 -124480438 - L1MEc LINE L1 -5207 1189 1068 2029 133 4 0 chr1 118183915 118184219 -124480134 - AluSx SINE Alu 0 309 5 3657 214 45 63 chr1 118184219 118184281 -124480072 - L1MEc LINE L1 -5328 1068 1006 2038 116 9 56 chr1 118184281 118184600 -124479753 - AluSq SINE Alu 0 313 10 3657 214 45 63 chr1 118184600 118184801 -124479552 - L1MEc LINE L1 -5390 1006 803 1862 151 0 24 chr1 118184801 118185093 -124479260 - AluJo SINE Alu -22 290 6 3657 214 45 63 chr1 118185093 118185818 -124478535 - L1MEc LINE L1 -5593 803 98 196 42 0 0 chr1 118185819 118185843 -124478510 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 912 95 0 0 chr1 118185843 118185959 -124478394 - AluSg/x SINE Alu -1 304 166 2290 55 66 0 chr1 118185974 118186263 -124478090 - AluY SINE Alu -3 308 1 216 0 0 0 chr1 118186273 118186297 -124478056 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 437 152 0 0 chr1 118186300 118186366 -124477987 - L1MEc LINE L1 -6295 101 36 290 244 71 0 chr1 118188478 118188605 -124475748 + L1ME4a LINE L1 5983 6118 -3 207 100 0 0 chr1 118188749 118188779 -124475574 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2171 102 0 7 chr1 118189576 118189861 -124474492 - AluSq SINE Alu -30 283 1 2415 98 0 0 chr1 118190582 118190887 -124473466 - AluSx SINE Alu -7 305 1 1865 128 21 7 chr1 118191639 118191949 -124472404 - AluJb SINE Alu 0 314 1 1797 147 10 23 chr1 118191975 118192274 -124472079 - AluJb SINE Alu -17 295 1 368 281 88 0 chr1 118193136 118193250 -124471103 + L2 LINE L2 3190 3313 0 23 0 0 0 chr1 118193283 118193306 -124471047 + AT_rich Low_complexity Low_complexity 1 23 0 1046 165 6 0 chr1 118193509 118193673 -124470680 + AluJb SINE Alu 130 294 -18 438 250 70 0 chr1 118193915 118194043 -124470310 + MIR SINE MIR 46 182 -80 180 219 0 0 chr1 118195377 118195418 -124468935 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 241 209 0 0 chr1 118195423 118195466 -124468887 + L1MC4 LINE L1 6659 6701 -1341 3053 219 6 30 chr1 118196533 118197198 -124467155 + MER82 DNA MER2_type 1 649 -4 2951 201 21 10 chr1 118197320 118197903 -124466450 + MLT-int LTR MaLR 74 662 -1073 294 290 0 70 chr1 118198166 118198266 -124466087 + MLT-int LTR MaLR 1288 1380 -355 1744 166 3 18 chr1 118198266 118198550 -124465803 + AluJo SINE Alu 1 280 -32 1259 167 0 5 chr1 118198554 118198758 -124465595 - AluJb SINE Alu -17 295 93 1991 138 33 24 chr1 118198836 118199103 -124465250 + MLT1A1-int LTR MaLR 1386 1658 -77 2303 121 0 0 chr1 118199103 118199409 -124464944 + AluSp SINE Alu 1 306 -7 1991 138 33 24 chr1 118199409 118199474 -124464879 + MLT1A1-int LTR MaLR 1658 1721 -14 2084 178 3 8 chr1 118199517 118199872 -124464481 + MLT1A1 LTR MaLR 10 362 -3 2456 80 0 0 chr1 118200029 118200329 -124464024 - AluSg1 SINE Alu -9 300 1 464 162 0 0 chr1 118200502 118200576 -124463777 + AluJ/FLAM SINE Alu 14 87 -225 400 317 67 18 chr1 118201357 118201521 -124462832 + MIR3 SINE MIR 30 201 -7 1815 189 42 3 chr1 118201571 118201905 -124462448 - MER7A DNA MER2_type 0 346 2 1130 170 13 45 chr1 118202568 118202731 -124461622 - MER20 DNA MER1_type -2 217 61 1906 146 17 3 chr1 118202731 118203025 -124461328 + AluJb SINE Alu 1 298 -14 1130 170 13 45 chr1 118203025 118203085 -124461268 - MER20 DNA MER1_type -158 61 1 23 0 0 0 chr1 118203651 118203674 -124460679 + AT_rich Low_complexity Low_complexity 1 23 0 1744 144 19 4 chr1 118203686 118203956 -124460397 - AluJb SINE Alu -35 277 4 293 295 58 14 chr1 118205218 118205357 -124458996 + MER5A DNA MER1_type 45 189 0 2370 93 0 6 chr1 118205545 118205858 -124458495 - AluSq SINE Alu -2 311 1 268 340 68 66 chr1 118206576 118206896 -124457457 + L2 LINE L2 2170 2488 -826 396 0 0 0 chr1 118206896 118206940 -124457413 + (CA)n Simple_repeat Simple_repeat 2 45 0 268 340 68 66 chr1 118206940 118207284 -124457069 + L2 LINE L2 2488 2835 -479 366 189 44 56 chr1 118207622 118207712 -124456641 + L2 LINE L2 3213 3301 -12 229 333 26 26 chr1 118208053 118208170 -124456183 - L2 LINE L2 -22 3250 3134 187 263 175 18 chr1 118208495 118208609 -124455744 + MIR3 SINE MIR 15 146 -62 1824 174 0 20 chr1 118209122 118209421 -124454932 - AluJo SINE Alu -19 293 1 2207 106 0 7 chr1 118209547 118209840 -124454513 - AluSg SINE Alu -17 293 3 884 194 48 0 chr1 118209920 118210085 -124454268 - AluJb SINE Alu -13 299 127 1693 178 7 26 chr1 118210113 118210417 -124453936 + AluJo SINE Alu 1 298 -14 1001 161 39 39 chr1 118210933 118211113 -124453240 - MER20 DNA MER1_type 0 219 40 350 196 143 58 chr1 118211806 118211930 -124452423 - L2 LINE L2 0 3313 3166 705 206 0 22 chr1 118211930 118212066 -124452287 + FLAM_A SINE Alu 1 133 0 350 196 143 58 chr1 118212066 118212130 -124452223 - L2 LINE L2 -147 3166 3109 2518 60 0 0 chr1 118212141 118212439 -124451914 - AluY SINE Alu -10 301 4 2317 89 0 7 chr1 118212574 118212876 -124451477 - AluY SINE Alu -11 300 1 2251 111 0 13 chr1 118213367 118213673 -124450680 - AluSx SINE Alu -10 302 1 1847 281 169 17 chr1 118213771 118213909 -124450444 - L2 LINE L2 -16 3297 3181 1999 151 0 3 chr1 118213909 118214201 -124450152 + AluJb SINE Alu 1 291 -21 1847 281 169 17 chr1 118214201 118214956 -124449397 - L2 LINE L2 -132 3181 2542 2041 133 3 7 chr1 118214956 118215258 -124449095 + AluSx SINE Alu 1 301 -11 1847 281 169 17 chr1 118215258 118215692 -124448661 - L2 LINE L2 -771 2542 1771 314 222 278 7 chr1 118215696 118215840 -124448513 - MIR SINE MIR -78 184 2 1108 187 117 33 chr1 118217095 118217257 -124447096 + MER5C DNA MER1_type 1 148 -176 2401 78 0 10 chr1 118217257 118217553 -124446800 + AluY SINE Alu 1 293 -18 1108 187 117 33 chr1 118217553 118217689 -124446664 + MER5C DNA MER1_type 148 324 0 237 269 90 0 chr1 118217780 118217847 -124446506 - L2 LINE L2 0 3272 3200 1705 179 37 25 chr1 118218322 118218730 -124445623 - L1MB4 LINE L1 0 6180 5768 1986 145 23 0 chr1 118218731 118219034 -124445319 - AluSx SINE Alu -2 310 1 2266 103 0 7 chr1 118220575 118220875 -124443478 - AluSx SINE Alu -14 298 1 2342 103 3 3 chr1 118220885 118221197 -124443156 - AluSp SINE Alu -1 312 1 515 255 7 33 chr1 118222738 118222891 -124441462 - MIR SINE MIR -6 256 108 240 146 0 0 chr1 118223068 118223123 -124441230 + LTR66 LTR ERVL 394 448 -162 1858 156 17 17 chr1 118223192 118223493 -124440860 + AluJb SINE Alu 1 301 -11 1651 162 0 84 chr1 118223522 118223852 -124440501 - AluSp SINE Alu 0 304 1 2302 94 10 13 chr1 118224005 118224313 -124440040 + AluSx SINE Alu 1 307 -5 22 56 0 0 chr1 118224923 118224959 -124439394 + AT_rich Low_complexity Low_complexity 1 36 0 2032 116 0 36 chr1 118225112 118225413 -124438940 + AluSg SINE Alu 1 290 -20 1980 116 0 40 chr1 118226707 118227009 -124437344 + AluSx SINE Alu 1 290 -22 934 147 0 0 chr1 118227309 118227445 -124436908 + FLAM_C SINE Alu 1 136 -7 1610 153 7 11 chr1 118227545 118227826 -124436527 - L1P4 LINE L1 -531 5630 5351 7055 41 6 3 chr1 118227850 118228706 -124435647 - L1PA4 LINE L1 -1 6154 5297 7901 53 1 1 chr1 118228806 118229812 -124434541 - L1PA4 LINE L1 -2260 3886 2881 323 273 23 0 chr1 118229936 118230024 -124434329 - L1MC4 LINE L1 -1339 6703 6614 300 200 43 0 chr1 118230001 118230071 -124434282 - L1MCa LINE L1 -4358 2068 1996 * 848 120 0 0 chr1 118230126 118230243 -124434110 - FLAM_C SINE Alu -16 117 1 4421 144 32 64 chr1 118231203 118232084 -124432269 - L1MB2 LINE L1 -38 6133 5281 638 209 245 24 chr1 118232318 118232649 -124431704 + L1M2 LINE L1 1484 1887 -5143 10389 183 35 62 chr1 118232665 118232742 -124431611 + L1M2 LINE L1 3220 3298 -3974 2322 101 0 0 chr1 118232742 118233040 -124431313 - AluY SINE Alu -13 298 1 10389 183 35 62 chr1 118233040 118233493 -124430860 + L1M2 LINE L1 3298 3762 -3510 1989 108 38 17 chr1 118233493 118233781 -124430572 - AluSg SINE Alu -16 294 1 10389 183 35 62 chr1 118233781 118235795 -124428558 + L1M2 LINE L1 3762 5830 -1442 1394 187 66 11 chr1 118235795 118236068 -124428285 + AluJo SINE Alu 3 290 -22 10389 183 35 62 chr1 118236068 118236420 -124427933 + L1M2 LINE L1 5830 6190 -1082 2430 92 0 0 chr1 118236420 118236714 -124427639 - AluSc SINE Alu -15 294 1 10389 183 35 62 chr1 118236714 118237353 -124427000 + L1M2 LINE L1 6190 6563 -709 2242 121 0 3 chr1 118237353 118237658 -124426695 + AluSg SINE Alu 1 304 -6 10389 183 35 62 chr1 118237658 118237830 -124426523 + L1M2 LINE L1 6563 6738 -534 500 158 0 30 chr1 118237939 118238040 -124426313 + MER46A DNA MER2_type 139 236 0 232 331 71 24 chr1 118238054 118238181 -124426172 + MER5A DNA MER1_type 1 133 -56 190 283 65 72 chr1 118238085 118238223 -124426130 - MER5A DNA MER1_type -22 167 31 * 2223 134 7 0 chr1 118238314 118238620 -124425733 + AluSx SINE Alu 5 312 0 182 191 170 0 chr1 118239969 118240016 -124424337 + MER5B DNA MER1_type 1 55 -123 1687 85 76 13 chr1 118240027 118240263 -124424090 + AluY SINE Alu 1 251 -60 287 308 177 0 chr1 118241200 118241330 -124423023 + MIR3 SINE MIR 49 201 -7 1651 107 57 11 chr1 118242102 118242382 -124421971 - L1MB3 LINE L1 0 6183 5891 416 305 24 24 chr1 118242780 118242947 -124421406 + MIR3 SINE MIR 27 193 -15 521 258 8 0 chr1 118244037 118244161 -124420192 + Charlie4 DNA MER1_type 1837 1961 0 2075 108 18 4 chr1 118244258 118244560 -124419793 - AluSx SINE Alu 0 306 1 2332 94 24 0 chr1 118245550 118245847 -124418506 - AluSg SINE Alu -6 304 1 287 337 70 35 chr1 118245892 118246064 -124418289 - MIR SINE MIR -79 183 6 246 342 0 0 chr1 118247217 118247293 -124417060 + MIR SINE MIR 158 233 -29 271 224 11 51 chr1 118249341 118249431 -124414922 - MIR SINE MIR -86 122 49 985 194 166 16 chr1 118249644 118250030 -124414323 + L1MC5 LINE L1 7501 7944 -17 2359 81 0 3 chr1 118250044 118250339 -124414014 + AluY SINE Alu 1 294 -17 275 232 248 0 chr1 118250402 118250527 -124413826 - MIR SINE MIR -21 241 86 474 274 34 73 chr1 118250561 118250765 -124413588 + MIR SINE MIR 31 226 -36 1620 196 14 7 chr1 118252226 118252517 -124411836 + AluJb SINE Alu 1 293 -19 963 153 13 0 chr1 118253555 118253712 -124410641 - MER20 DNA MER1_type -59 160 2 1162 191 21 34 chr1 118253849 118254012 -124410341 - AluJb SINE Alu -18 294 133 2238 100 7 13 chr1 118254012 118254313 -124410040 - AluSx SINE Alu -13 299 1 1162 191 21 34 chr1 118254313 118254385 -124409968 - AluJb SINE Alu -179 133 62 479 269 163 0 chr1 118256927 118257087 -124407266 + MER5A DNA MER1_type 4 189 0 573 171 212 27 chr1 118257330 118257476 -124406877 - MER5B DNA MER1_type -5 173 1 187 305 139 43 chr1 118257906 118258056 -124406297 - MIR SINE MIR -2 260 87 1879 110 57 57 chr1 118258056 118258183 -124406170 + AluSx SINE Alu 1 127 -185 2065 88 102 14 chr1 118258183 118258468 -124405885 + AluSx SINE Alu 1 310 -2 1879 110 57 57 chr1 118258468 118258639 -124405714 + AluSx SINE Alu 126 299 -13 187 305 139 43 chr1 118258639 118258675 -124405678 - MIR SINE MIR -175 87 56 268 316 92 9 chr1 118259069 118259211 -124405142 - MIR SINE MIR -65 143 11 327 213 94 16 chr1 118260920 118261047 -124403306 - L1ME4a LINE L1 -9 6112 5976 798 280 82 13 chr1 118261057 118261435 -124402918 - L1ME4a LINE L1 -191 5930 5527 878 227 68 0 chr1 118262050 118262270 -124402083 - MIR SINE MIR -16 246 12 521 216 93 14 chr1 118262402 118262541 -124401812 - MIR SINE MIR -1 261 112 220 173 39 19 chr1 118262629 118262681 -124401672 + G-rich Low_complexity Low_complexity 3 55 0 204 222 0 0 chr1 118268195 118268240 -124396113 + (TG)n Simple_repeat Simple_repeat 1 45 0 262 321 86 21 chr1 118269197 118269384 -124394969 + MIR SINE MIR 28 226 -36 248 295 0 0 chr1 118273844 118273922 -124390431 + G-rich Low_complexity Low_complexity 1 78 0 276 317 104 6 chr1 118275668 118275815 -124388538 - MER5A DNA MER1_type -10 179 6 977 136 413 0 chr1 118276769 118276975 -124387378 - AluJb SINE Alu -21 291 1 463 295 64 83 chr1 118277078 118277314 -124387039 - L1ME4a LINE L1 -3 6118 5890 2229 116 13 3 chr1 118277314 118277617 -124386736 - AluSx SINE Alu -6 306 1 463 295 64 83 chr1 118277617 118277753 -124386600 - L1ME4a LINE L1 -231 5890 5753 632 247 113 5 chr1 118277791 118277985 -124386368 + MIR SINE MIR 48 262 0 475 343 19 14 chr1 118279694 118279907 -124384446 - MIR SINE MIR -29 233 20 281 308 51 22 chr1 118280291 118280466 -124383887 + MIR SINE MIR 21 198 -55 2403 88 7 0 chr1 118281006 118281311 -124383042 - AluSp SINE Alu -6 307 1 2450 66 0 3 chr1 118281339 118281665 -124382688 - AluSq SINE Alu 0 325 1 520 291 12 12 chr1 118281904 118282069 -124382284 - MIR SINE MIR -70 192 28 538 278 69 17 chr1 118282868 118283041 -124381312 - MER91A DNA MER1_type 0 196 15 218 237 85 0 chr1 118283471 118283530 -124380823 - MER91A DNA MER1_type -15 181 118 325 347 41 8 chr1 118283561 118283682 -124380671 - MER91A DNA MER1_type -45 151 27 1859 160 38 0 chr1 118284165 118284453 -124379900 - AluJo SINE Alu -13 299 1 3560 158 20 26 chr1 118285312 118285556 -124378797 + L1MB5 LINE L1 5447 5691 -483 2280 88 27 7 chr1 118285556 118285850 -124378503 + AluSx SINE Alu 3 302 -10 270 0 0 0 chr1 118285854 118285884 -124378469 + (CA)n Simple_repeat Simple_repeat 2 31 0 3560 158 20 26 chr1 118285884 118286366 -124377987 + L1MB5 LINE L1 5694 6174 0 234 314 47 0 chr1 118286380 118286466 -124377887 + MIR SINE MIR 118 207 -55 2684 36 10 0 chr1 118287577 118287882 -124376471 - AluY SINE Alu -3 308 1 537 227 62 9 chr1 118288364 118288548 -124375805 + MIR SINE MIR 63 262 0 189 0 0 0 chr1 118289016 118289037 -124375316 + (T)n Simple_repeat Simple_repeat 1 21 0 3347 179 19 9 chr1 118289259 118289947 -124374406 - L1 LINE L1 -846 5300 4606 2400 81 0 0 chr1 118289948 118290255 -124374098 + AluSx SINE Alu 1 307 0 405 133 0 0 chr1 118291053 118291113 -124373240 - L2 LINE L2 0 3272 3213 301 378 22 0 chr1 118291698 118291878 -124372475 - MIR SINE MIR -52 210 27 548 263 6 53 chr1 118292326 118292497 -124371856 - L2 LINE L2 0 3313 3151 412 209 215 45 chr1 118293298 118293475 -124370878 - MIR SINE MIR -31 231 25 648 184 121 44 chr1 118294833 118295039 -124369314 - MIR SINE MIR -13 249 28 213 362 64 0 chr1 118295673 118295767 -124368586 + MIR SINE MIR 38 137 -71 962 199 21 0 chr1 118295997 118296188 -124368165 - MIR SINE MIR -29 233 39 310 238 0 0 chr1 118296260 118296323 -124368030 + L2 LINE L2 3225 3287 -26 383 256 44 38 chr1 118297455 118297615 -124366738 - MIR SINE MIR -36 226 66 388 293 83 15 chr1 118297836 118297969 -124366384 + MIR SINE MIR 13 154 -108 321 287 50 0 chr1 118299531 118299632 -124364721 - MIR SINE MIR -73 189 84 2611 55 0 7 chr1 118299641 118299951 -124364402 - AluY SINE Alu -3 308 1 492 182 121 0 chr1 118300057 118300156 -124364197 + MER69 DNA AcHobo 37 147 -1079 230 241 0 72 chr1 118300150 118300233 -124364120 + MER69 DNA AcHobo 2447 2523 -3 * 2254 110 30 0 chr1 118300367 118300666 -124363687 - AluSx SINE Alu -4 308 1 321 289 19 95 chr1 118301209 118301420 -124362933 + L2 LINE L2 2877 3071 -201 1897 132 66 0 chr1 118301644 118301917 -124362436 + AluSx SINE Alu 2 292 -20 258 333 26 18 chr1 118302085 118302101 -124362252 - MLT1J1 LTR MaLR -231 178 164 1808 201 143 36 chr1 118302101 118302632 -124361721 - MLT1G LTR MaLR -2 588 1 258 333 26 18 chr1 118302632 118302729 -124361624 - MLT1J1 LTR MaLR -245 164 63 210 67 0 0 chr1 118302762 118302770 -124361583 + (GAA)n Simple_repeat Simple_repeat 1 8 -22 1828 171 47 0 chr1 118302770 118303068 -124361285 + AluJo SINE Alu 1 312 0 210 67 0 0 chr1 118303068 118303089 -124361264 + (GAA)n Simple_repeat Simple_repeat 7 30 0 2289 129 0 0 chr1 118303325 118303662 -124360691 - AluSx SINE Alu 0 312 1 798 270 78 77 chr1 118303976 118304188 -124360165 + L1MC4a LINE L1 5478 5688 -433 2527 91 0 0 chr1 118304188 118304497 -124359856 + AluSx SINE Alu 1 309 -3 798 270 78 77 chr1 118304497 118304912 -124359441 + L1MC4a LINE L1 5688 6108 -13 277 100 20 0 chr1 118305025 118305075 -124359278 + L1MB4 LINE L1 6128 6178 -2 1692 139 92 7 chr1 118305131 118305404 -124358949 + AluJo SINE Alu 6 301 -11 423 0 0 0 chr1 118305628 118305675 -124358678 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1728 113 97 0 chr1 118305675 118305923 -124358430 - AluSx SINE Alu -40 272 1 309 249 145 2 chr1 118306574 118306704 -124357649 + MIR SINE MIR 19 163 -62 1111 206 160 24 chr1 118306704 118307046 -124357307 - MLT1E2 LTR MaLR -4 622 206 2552 75 0 3 chr1 118307083 118307391 -124356962 - AluSq SINE Alu -6 307 1 286 81 0 0 chr1 118307405 118307442 -124356911 - U6 snRNA snRNA -5 102 66 518 263 8 0 chr1 118307456 118307574 -124356779 - MLT1E2 LTR MaLR -427 166 48 200 265 277 0 chr1 118307615 118307698 -124356655 + MIR SINE MIR 146 251 -11 2140 66 4 0 chr1 118308290 118308546 -124355807 - AluY SINE Alu -54 257 1 187 250 73 15 chr1 118308918 118308986 -124355367 + L2 LINE L2 2687 2758 -556 203 253 131 20 chr1 118309340 118309439 -124354914 + L2 LINE L2 3175 3284 -29 257 326 47 29 chr1 118311009 118311181 -124353172 - L2 LINE L2 -177 3095 2921 296 273 93 0 chr1 118311232 118311361 -124352992 - MIR SINE MIR -19 243 101 1899 164 3 7 chr1 118311802 118312112 -124352241 + AluJo SINE Alu 1 309 -3 1922 148 39 31 chr1 118312309 118312609 -124351744 - MLT1A1 LTR MaLR -4 361 56 1644 50 80 0 chr1 118312609 118312810 -124351543 - AluY SINE Alu -12 299 83 1922 148 39 31 chr1 118312810 118312866 -124351487 - MLT1A1 LTR MaLR -309 56 2 8056 192 72 13 chr1 118312872 118314504 -124349849 - MLT1A1-int LTR MaLR -6 1729 2 1498 177 114 21 chr1 118314506 118314839 -124349514 - MLT1A1 LTR MaLR 0 365 2 29 28 0 0 chr1 118314906 118314942 -124349411 + AT_rich Low_complexity Low_complexity 1 36 0 516 314 118 59 chr1 118314992 118315756 -124348597 - L1MC4a LINE L1 -1743 6065 5257 186 43 0 0 chr1 118317284 118317307 -124347046 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 378 290 41 35 chr1 118317676 118317821 -124346532 - MER91B DNA MER1_type -13 177 32 294 29 0 0 chr1 118318461 118318496 -124345857 + (TG)n Simple_repeat Simple_repeat 1 35 0 228 35 0 0 chr1 118318593 118318622 -124345731 + (TG)n Simple_repeat Simple_repeat 1 29 0 41246 34 0 3 chr1 118319456 118324587 -124339766 - L1P LINE L1 -1027 5119 6 220 244 97 117 chr1 118324588 118324739 -124339614 - MIR SINE MIR -63 145 5 287 309 12 0 chr1 118325281 118325365 -124338988 - MIR3 SINE MIR -52 156 72 214 269 0 0 chr1 118329620 118329672 -124334681 + L2 LINE L2 3214 3265 -7 2132 133 33 46 chr1 118330623 118331081 -124333272 + L1MB4 LINE L1 5729 6180 0 1796 112 13 62 chr1 118331168 118331473 -124332880 + AluJb SINE Alu 1 290 -22 318 197 14 0 chr1 118332132 118332203 -124332150 + MIR3 SINE MIR 109 180 -28 264 234 54 27 chr1 118332402 118332476 -124331877 - MIR SINE MIR -62 146 90 343 303 0 0 chr1 118332571 118332680 -124331673 + L3 LINE CR1 1336 1444 -133 335 327 38 31 chr1 118333414 118333573 -124330780 + MER5B DNA MER1_type 18 177 -1 208 167 103 51 chr1 118333664 118333742 -124330611 + L3 LINE CR1 1280 1361 -216 269 312 98 2 chr1 118333796 118333936 -124330417 - MIR SINE MIR -40 168 18 267 191 0 0 chr1 118334124 118334187 -124330166 + (CA)n Simple_repeat Simple_repeat 1 63 0 298 266 91 68 chr1 118334513 118334776 -124329577 - L1ME4a LINE L1 -8 6113 5845 946 269 111 84 chr1 118336294 118337407 -124326946 + L2 LINE L2 1947 3172 -141 356 34 102 0 chr1 118337530 118337589 -124326764 + L1MB8 LINE L1 6113 6177 -1 2414 83 0 10 chr1 118337599 118337912 -124326441 + AluY SINE Alu 1 310 -1 413 232 0 64 chr1 118337975 118338068 -124326285 + MER5C DNA MER1_type 208 293 -31 1677 124 0 0 chr1 118338068 118338294 -124326059 + AluSg/x SINE Alu 78 303 -9 413 232 0 64 chr1 118338294 118338325 -124326028 + MER5C DNA MER1_type 293 324 0 15939 21 1 0 chr1 118338359 118340813 -124323540 + L1PA3 LINE L1 3560 6015 -140 1689 126 52 19 chr1 118341380 118341480 -124322873 + AluJb SINE Alu 21 116 -196 1728 96 0 29 chr1 118341480 118341763 -124322590 + AluY SINE Alu 50 325 0 1689 126 52 19 chr1 118341763 118341930 -124322423 + AluJb SINE Alu 116 298 -14 371 328 95 42 chr1 118342222 118342484 -124321869 + L2 LINE L2 2992 3267 -5 394 261 100 28 chr1 118342739 118342919 -124321434 + MIR3 SINE MIR 12 204 -4 315 219 110 12 chr1 118343255 118343337 -124321016 + MIR SINE MIR 50 139 -123 2280 108 0 0 chr1 118345023 118345341 -124319012 - AluSq SINE Alu 0 318 1 23 0 0 0 chr1 118345347 118345370 -124318983 + AT_rich Low_complexity Low_complexity 1 23 0 199 308 13 26 chr1 118345657 118345735 -124318618 - MIR SINE MIR -113 95 19 522 257 128 1 chr1 118346112 118346334 -124318019 + MIR SINE MIR 15 256 -6 235 221 35 67 chr1 118346548 118346655 -124317698 + MIR SINE MIR 27 124 -84 343 256 78 0 chr1 118347282 118347400 -124316953 - MIR SINE MIR -47 161 34 1102 217 8 8 chr1 118349878 118350127 -124314226 + MIR SINE MIR 4 252 -10 231 206 191 92 chr1 118350200 118350331 -124314022 - MIR3 SINE MIR -60 148 5 705 195 69 6 chr1 118354872 118355046 -124309307 + MIR SINE MIR 72 256 -6 197 250 0 0 chr1 118358200 118358244 -124306109 + L2 LINE L2 3259 3302 -11 2534 54 0 3 chr1 118358332 118358629 -124305724 - AluY SINE Alu -15 296 1 891 215 97 0 chr1 118359283 118359520 -124304833 + MIR SINE MIR 3 262 0 2376 86 0 7 chr1 118359675 118359977 -124304376 + AluSx SINE Alu 1 300 -12 424 156 0 0 chr1 118360348 118360412 -124303941 - AluJ/FLAM SINE Alu -243 69 6 368 302 129 10 chr1 118360688 118360890 -124303463 + MIR SINE MIR 7 232 -30 6337 106 32 8 chr1 118361553 118361922 -124302431 - L1PB1 LINE L1 -1 6150 5791 198 0 0 0 chr1 118361922 118361944 -124302409 + (TG)n Simple_repeat Simple_repeat 2 23 0 6337 106 32 8 chr1 118361944 118362699 -124301654 - L1PB1 LINE L1 -360 5791 5005 2847 197 31 3 chr1 118362694 118362768 -124301585 + L1 LINE L1 4318 4388 -1758 * 194 0 39 0 chr1 118362768 118362794 -124301559 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 2847 197 31 3 chr1 118362794 118363337 -124301016 + L1 LINE L1 4388 4952 -1194 426 69 0 0 chr1 118363794 118363852 -124300501 + (TG)n Simple_repeat Simple_repeat 2 59 0 1449 155 55 52 chr1 118363879 118364169 -124300184 - AluJb SINE Alu -6 306 16 216 325 38 0 chr1 118364548 118364628 -124299725 + L2 LINE L2 2440 2522 -792 21 71 0 0 chr1 118364709 118364751 -124299602 + AT_rich Low_complexity Low_complexity 1 42 0 1946 140 11 0 chr1 118364798 118365077 -124299276 - AluSx SINE Alu -30 282 1 254 136 0 0 chr1 118365794 118365838 -124298515 + L2 LINE L2 3261 3304 -9 2278 115 0 0 chr1 118365983 118366288 -124298065 + AluSx SINE Alu 1 305 -7 2275 111 0 16 chr1 118366739 118367054 -124297299 + AluSg SINE Alu 1 310 0 418 136 296 0 chr1 118368338 118368419 -124295934 + FLAM_C SINE Alu 22 126 -17 1165 193 10 0 chr1 118368494 118368691 -124295662 - AluJo SINE Alu -113 199 1 1259 179 39 16 chr1 118369109 118369398 -124294955 - L1MD3 LINE L1 -2 7993 7489 247 293 0 0 chr1 118369589 118369647 -124294706 - L2 LINE L2 -218 3054 2997 185 279 16 16 chr1 118369739 118369800 -124294553 - L2 LINE L2 -338 2976 2916 202 109 65 0 chr1 118369920 118369966 -124294387 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1332 121 0 19 chr1 118370062 118370268 -124294085 - MER2 DNA MER2_type -135 210 9 1782 146 58 14 chr1 118370958 118371252 -124293101 + AluJb SINE Alu 1 307 -5 220 325 0 33 chr1 118372053 118372204 -124292149 + T-rich Low_complexity Low_complexity 5 150 0 2077 101 42 11 chr1 118372823 118373109 -124291244 + AluSg1 SINE Alu 1 295 -14 222 270 0 54 chr1 118373117 118373191 -124291162 - L2 LINE L2 0 3313 3244 215 310 0 28 chr1 118373462 118373533 -124290820 - L2 LINE L2 -3 3310 3242 2349 90 3 3 chr1 118374405 118374705 -124289648 - AluSq SINE Alu -13 300 1 332 167 0 0 chr1 118375619 118375673 -124288680 - MIR SINE MIR -5 257 204 1925 140 3 38 chr1 118376097 118376412 -124287941 + AluJo SINE Alu 3 306 -6 1421 149 47 81 chr1 118376526 118376822 -124287531 - AluJo SINE Alu -14 298 13 547 318 153 18 chr1 118378192 118378801 -124285552 - L2 LINE L2 0 3313 2605 471 178 104 59 chr1 118378815 118378950 -124285403 + Charlie7 DNA MER1_type 60 200 -2412 708 224 34 98 chr1 118378950 118379214 -124285139 - L2 LINE L2 -858 2456 2210 1002 204 49 0 chr1 118379215 118379440 -124284913 + MIR SINE MIR 25 260 -2 2113 264 69 50 chr1 118379442 118379478 -124284875 - L2 LINE L2 -1086 2228 2194 2242 109 0 0 chr1 118379478 118379771 -124284582 + AluSx SINE Alu 1 293 -19 2113 264 69 50 chr1 118379771 118379868 -124284485 - L2 LINE L2 -1120 2194 2100 2117 116 0 7 chr1 118379868 118380174 -124284179 + AluSx SINE Alu 1 304 0 2113 264 69 50 chr1 118380174 118381043 -124283310 - L2 LINE L2 -1214 2100 1205 2283 80 37 0 chr1 118383373 118383672 -124280681 - AluSg SINE Alu 0 310 1 2206 129 0 0 chr1 118383908 118384211 -124280142 - AluSq SINE Alu -10 303 1 2334 104 0 9 chr1 118384348 118384664 -124279689 - AluSp SINE Alu 0 313 1 1678 107 0 5 chr1 118385112 118385336 -124279017 - AluSc SINE Alu -5 304 82 2101 96 4 4 chr1 118385604 118385874 -124278479 - AluSg SINE Alu -40 270 1 24 32 0 0 chr1 118386254 118386285 -124278068 + AT_rich Low_complexity Low_complexity 1 31 0 2415 93 3 0 chr1 118386487 118386797 -124277556 + AluSq SINE Alu 3 313 0 2423 62 10 0 chr1 118388303 118388594 -124275759 - AluY SINE Alu -17 294 1 1858 152 3 92 chr1 118388776 118389157 -124275196 - MER7A DNA MER2_type -1 345 1 2158 88 0 3 chr1 118389904 118390217 -124274136 + AluSx SINE Alu 3 314 0 1452 159 52 48 chr1 118390278 118390587 -124273766 - AluJo SINE Alu -2 310 1 1805 152 0 31 chr1 118391489 118391811 -124272542 - AluJo SINE Alu 0 312 1 2003 102 0 40 chr1 118391883 118392186 -124272167 - AluSc SINE Alu -17 292 2 274 220 68 0 chr1 118392928 118392987 -124271366 - L2 LINE L2 0 3272 3210 24 77 0 0 chr1 118393785 118393837 -124270516 + AT_rich Low_complexity Low_complexity 1 52 0 874 252 51 17 chr1 118393920 118394154 -124270199 + MIR SINE MIR 21 262 0 616 209 54 23 chr1 118395440 118395569 -124268784 + FLAM_A SINE Alu 1 133 0 2201 53 46 7 chr1 118396395 118396679 -124267674 + AluY SINE Alu 1 295 -16 2290 92 0 0 chr1 118396909 118397212 -124267141 + AluSc SINE Alu 1 303 -6 350 213 85 11 chr1 118397354 118397448 -124266905 + L1ME4a LINE L1 6018 6118 -3 867 136 413 0 chr1 118397551 118397757 -124266596 + AluJb SINE Alu 1 291 -21 285 311 104 6 chr1 118398711 118398858 -124265495 + MER5A DNA MER1_type 6 179 -10 743 45 0 0 chr1 118400746 118400835 -124263518 + AluSc SINE Alu 186 274 -35 270 0 0 0 chr1 118400835 118400865 -124263488 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 207 288 279 10 chr1 118400952 118401432 -124262921 - L2 LINE L2 -954 2360 1752 1455 170 124 19 chr1 118401566 118401930 -124262423 + L1MB5 LINE L1 5765 6166 -8 1542 162 50 14 chr1 118402517 118402814 -124261539 - AluSx SINE Alu -4 308 1 359 131 0 0 chr1 118403092 118403153 -124261200 - L1MB7 LINE L1 -5 6179 6119 869 84 0 0 chr1 118403483 118403590 -124260763 - U6 snRNA snRNA 0 107 1 237 318 45 45 chr1 118404635 118404745 -124259608 - MIR3 SINE MIR -92 116 7 2154 85 48 0 chr1 118409085 118409378 -124254975 + AluSg SINE Alu 2 308 -2 1983 131 13 0 chr1 118409538 118409836 -124254517 + AluSq SINE Alu 1 302 -11 1830 101 72 4 chr1 118410260 118410537 -124253816 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 118410615 118410636 -124253717 + AT_rich Low_complexity Low_complexity 1 21 0 644 294 32 52 chr1 118410750 118411106 -124253247 + L1MC4a LINE L1 5124 5472 -649 1865 137 0 11 chr1 118411106 118411516 -124252837 - AluSx SINE Alu 0 407 1 644 294 32 52 chr1 118411516 118411691 -124252662 + L1MC4a LINE L1 5472 5649 -472 1929 122 11 0 chr1 118411890 118412192 -124252161 + AluSp SINE Alu 1 305 0 680 321 74 37 chr1 118412280 118412657 -124251696 + MLT1K LTR MaLR 132 522 -66 315 314 39 59 chr1 118412973 118413177 -124251176 + L1MC4a LINE L1 5724 5923 -1885 1576 227 88 38 chr1 118413684 118414164 -124250189 + MLT1D LTR MaLR 2 505 0 824 285 8 8 chr1 118414816 118415076 -124249277 - MIR SINE MIR -1 261 2 313 256 137 8 chr1 118415623 118415740 -124248613 + MIR3 SINE MIR 23 154 -54 200 297 76 59 chr1 118415856 118415974 -124248379 + MIR SINE MIR 88 207 -55 235 291 131 32 chr1 118417694 118417861 -124246492 - MIR SINE MIR -14 248 17 204 286 206 16 chr1 118418457 118418583 -124245770 - L2 LINE L2 -191 3081 2932 1835 158 59 3 chr1 118418626 118418948 -124245405 - MER2 DNA MER2_type -5 340 1 263 280 237 17 chr1 118419065 118419183 -124245170 - L2 LINE L2 -559 2755 2612 236 280 134 32 chr1 118420719 118420876 -124243477 - L2 LINE L2 -182 3090 2918 429 296 59 12 chr1 118421027 118421199 -124243154 + MIR SINE MIR 7 191 -17 184 167 56 0 chr1 118422106 118422142 -124242211 + L2 LINE L2 3271 3308 -5 236 225 84 14 chr1 118422577 118422648 -124241705 - MER94 DNA DNA -3 131 56 757 214 16 50 chr1 118422996 118423032 -124241321 - MIR SINE MIR -86 176 140 2223 102 3 0 chr1 118423032 118423327 -124241026 - AluSq SINE Alu -17 296 1 757 214 16 50 chr1 118423327 118423472 -124240881 - MIR SINE MIR -122 140 1 492 278 298 0 chr1 118424170 118424368 -124239985 - MIR SINE MIR 0 262 6 328 275 54 120 chr1 118425149 118425274 -124239079 - MIR SINE MIR -3 259 162 1871 161 0 0 chr1 118425274 118425566 -124238787 - AluSx SINE Alu -15 297 6 328 275 54 120 chr1 118425566 118425693 -124238660 - MIR SINE MIR -100 162 28 381 338 15 0 chr1 118426418 118426551 -124237802 - MIR SINE MIR -9 253 119 223 174 43 22 chr1 118426976 118427022 -124237331 + L2 LINE L2 3254 3300 -13 2065 130 0 0 chr1 118427791 118428092 -124236261 - AluSx SINE Alu -11 301 1 2166 157 61 77 chr1 118428163 118428396 -124235957 - L1MB2 LINE L1 -2 6169 5934 1795 132 3 17 chr1 118428396 118428684 -124235669 - AluJb SINE Alu -26 286 3 2166 157 61 77 chr1 118428684 118428942 -124235411 - L1MB2 LINE L1 -237 5934 5686 5345 71 16 9 chr1 118429173 118429619 -124234734 + LTR8 LTR ERV1 1 455 -236 2126 116 3 3 chr1 118429619 118429929 -124234424 - AluSg SINE Alu 0 310 1 5345 71 16 9 chr1 118429929 118430168 -124234185 + LTR8 LTR ERV1 455 691 0 46198 65 37 9 chr1 118430168 118431724 -124232629 + HUERS-P1 LTR ERV1 1 1513 -4750 1621 119 112 14 chr1 118431724 118432001 -124232352 - AluSq SINE Alu -9 304 1 46198 65 37 9 chr1 118432001 118434750 -124229603 + HUERS-P1 LTR ERV1 1513 4526 -1737 1428 168 110 63 chr1 118434750 118435178 -124229175 - LTR7 LTR ERV1 -2 448 1 46198 65 37 9 chr1 118435178 118436966 -124227387 + HUERS-P1 LTR ERV1 4526 6263 0 5151 75 39 0 chr1 118436966 118437631 -124226722 + LTR8 LTR ERV1 1 691 0 380 228 16 71 chr1 118437911 118438038 -124226315 + MER112 DNA MER1_type 33 152 -108 280 225 175 0 chr1 118438041 118438121 -124226232 + MER5C DNA MER1_type 1 94 -230 3997 135 57 15 chr1 118438133 118438799 -124225554 + L1MB8 LINE L1 5379 6072 -106 2105 104 7 0 chr1 118439099 118439397 -124224956 - AluSq SINE Alu -7 306 7 333 0 0 0 chr1 118442010 118442047 -124222306 + (TG)n Simple_repeat Simple_repeat 1 37 0 198 364 0 0 chr1 118445276 118445331 -124219022 + L2 LINE L2 3006 3060 -253 573 254 94 20 chr1 118445500 118445701 -124218652 - MIR SINE MIR -29 233 18 230 243 0 71 chr1 118448628 118448698 -124215655 - L2 LINE L2 -1 3312 3248 291 365 111 28 chr1 118448699 118449313 -124215040 + L2 LINE L2 2307 2971 -343 1603 199 6 6 chr1 118449478 118449805 -124214548 + LTR5 LTR ERVK 1 327 -642 496 350 22 13 chr1 118451398 118451624 -124212729 - MIR SINE MIR -29 233 6 181 323 71 0 chr1 118451722 118451821 -124212532 - L2 LINE L2 -656 2658 2553 283 308 51 22 chr1 118451995 118452170 -124212183 + MIR SINE MIR 21 198 -55 181 321 64 9 chr1 118452436 118452545 -124211808 - MIR SINE MIR -71 137 23 2242 85 7 3 chr1 118452710 118453016 -124211337 - AluSp SINE Alu -6 307 1 2308 66 0 3 chr1 118453044 118453366 -124210987 - AluSq SINE Alu 0 321 1 533 298 28 17 chr1 118453605 118453786 -124210567 - MIR SINE MIR -70 192 10 552 278 69 17 chr1 118454569 118454742 -124209611 - MER91A DNA MER1_type 0 196 15 220 250 54 0 chr1 118455175 118455231 -124209122 - MER91A DNA MER1_type -20 176 118 334 347 41 8 chr1 118455262 118455383 -124208970 - MER91A DNA MER1_type -45 151 27 1739 160 38 0 chr1 118455866 118456154 -124208199 - AluJo SINE Alu -13 299 1 3914 157 20 26 chr1 118457013 118457257 -124207096 + L1MB5 LINE L1 5447 5691 -483 2140 88 27 7 chr1 118457257 118457551 -124206802 + AluSx SINE Alu 3 302 -10 324 0 0 0 chr1 118457555 118457591 -124206762 + (CA)n Simple_repeat Simple_repeat 2 37 0 3914 157 20 26 chr1 118457591 118458073 -124206280 + L1MB5 LINE L1 5694 6174 0 236 314 47 0 chr1 118458087 118458173 -124206180 + MIR SINE MIR 118 207 -55 2524 33 10 0 chr1 118459284 118459587 -124204766 - AluY SINE Alu -3 308 3 2025 166 9 3 chr1 118459637 118459974 -124204379 + LOR1b LTR ERV1 123 461 0 781 138 0 22 chr1 118459974 118460112 -124204241 + L1MB1 LINE L1 6000 6134 -34 1845 121 103 2 chr1 118460112 118460614 -124203739 + MER51A LTR ERV1 1 634 0 2615 252 46 74 chr1 118460905 118462117 -124202236 + MER110-int LTR ERV1 1295 2472 -2175 1237 274 38 71 chr1 118462939 118463027 -124201326 + MER110-int LTR ERV1 2458 2547 -2100 1162 161 6 0 chr1 118463027 118463201 -124201152 + FAM SINE Alu 1 175 0 1237 274 38 71 chr1 118463201 118463644 -124200709 + MER110-int LTR ERV1 2547 2971 -1676 350 0 44 0 chr1 118463739 118463784 -124200569 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 857 214 0 0 chr1 118463786 118463931 -124200422 - FRAM SINE Alu -31 145 1 2067 83 7 0 chr1 118464557 118464833 -124199520 + AluSp SINE Alu 3 280 -33 1285 33 0 27 chr1 118464834 118465018 -124199335 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 387 0 0 0 chr1 118465027 118465070 -124199283 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 687 263 55 5 chr1 118465178 118465395 -124198958 + L1M4 LINE L1 2474 2701 -3445 210 250 0 0 chr1 118465779 118465831 -124198522 + L2 LINE L2 3262 3313 0 2128 111 0 7 chr1 118465982 118466288 -124198065 + AluSx SINE Alu 1 304 -8 375 23 0 0 chr1 118467309 118467353 -124197000 + (TG)n Simple_repeat Simple_repeat 1 44 0 421 343 25 10 chr1 118469953 118470157 -124194196 - MIR SINE MIR 0 262 56 318 343 69 26 chr1 118471488 118471721 -124192632 + MIR SINE MIR 20 262 0 1415 190 28 3 chr1 118472596 118472885 -124191468 - AluJo SINE Alu -16 296 1 2229 251 89 30 chr1 118473336 118474136 -124190217 + L1ME3 LINE L1 5314 6160 -2 2294 77 3 7 chr1 118474144 118474442 -124189911 + AluSg SINE Alu 1 297 -13 231 301 25 86 chr1 118474511 118474674 -124189679 + L2 LINE L2 3116 3268 -4 564 341 66 37 chr1 118474713 118475094 -124189259 - L1ME4a LINE L1 -169 5952 5561 2298 103 0 0 chr1 118475106 118475418 -124188935 - AluSx SINE Alu 0 312 1 1977 176 59 75 chr1 118475785 118476308 -124188045 + MLT2B2 LTR ERVL 1 515 0 186 43 0 0 chr1 118476318 118476341 -124188012 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1245 156 10 5 chr1 118476859 118477064 -124187289 - AluJb SINE Alu -22 290 85 286 268 77 38 chr1 118477448 118477484 -124186869 - MER112 DNA MER1_type -9 251 218 1464 120 0 9 chr1 118477484 118477700 -124186653 - AluSg/x SINE Alu -12 300 87 942 222 42 14 chr1 118477707 118477919 -124186434 - MER20 DNA MER1_type -1 218 1 286 268 77 38 chr1 118477919 118478057 -124186296 - MER112 DNA MER1_type -47 213 62 471 269 0 0 chr1 118478525 118478629 -124185724 - FRAM SINE Alu -19 157 54 4929 103 0 42 chr1 118480398 118481116 -124183237 - LTR12 LTR ERV1 0 688 1 2095 119 3 13 chr1 118482444 118482754 -124181599 + AluSx SINE Alu 1 307 -5 2282 91 3 3 chr1 118482756 118483065 -124181288 + AluSp SINE Alu 1 309 -4 568 301 21 10 chr1 118483069 118483262 -124181091 - MIR SINE MIR -12 250 56 2330 96 0 0 chr1 118483625 118483928 -124180425 - AluSx SINE Alu -9 303 1 1897 91 4 0 chr1 118484392 118484644 -124179709 - AluSx SINE Alu -46 266 14 225 337 86 27 chr1 118485116 118485303 -124179050 + MIR SINE MIR 65 262 0 443 256 96 50 chr1 118486544 118486626 -124177727 - HAL1 LINE L1 -826 1681 1604 2367 133 20 0 chr1 118486626 118486979 -124177374 - THE1B LTR MaLR -4 360 1 443 256 96 50 chr1 118486979 118487095 -124177258 - HAL1 LINE L1 -903 1604 1474 1791 152 3 7 chr1 118487106 118487409 -124176944 - AluSg SINE Alu -8 302 1 2137 261 95 18 chr1 118487760 118488562 -124175791 + L1ME3 LINE L1 5297 6160 -2 401 258 13 69 chr1 118488620 118488779 -124175574 + L2 LINE L2 3160 3309 -4 1916 143 26 13 chr1 118488888 118489195 -124175158 - AluSx SINE Alu -1 311 1 1764 130 3 54 chr1 118489223 118489538 -124174815 + AluSc SINE Alu 1 299 -10 448 355 62 14 chr1 118489579 118489855 -124174498 - L1ME LINE L1 -305 5816 5528 2192 104 0 23 chr1 118489947 118490254 -124174099 + AluSx SINE Alu 1 300 -12 1900 182 47 79 chr1 118490500 118491032 -124173321 + MLT2B2 LTR ERVL 1 515 0 720 254 45 5 chr1 118491960 118492161 -124172192 - MER20 DNA MER1_type -1 218 10 26 0 0 0 chr1 118492195 118492221 -124172132 + AT_rich Low_complexity Low_complexity 1 26 0 2015 83 0 0 chr1 118492986 118493281 -124171072 - AluY SINE Alu 0 312 18 197 296 0 0 chr1 118494333 118494387 -124169966 + L2 LINE L2 3219 3272 0 4310 60 4 7 chr1 118494405 118494928 -124169425 + LTR10C LTR ERV1 1 521 -70 4955 48 11 10 chr1 118494928 118495946 -124168407 + MER11A LTR ERVK 1 1261 -5 633 65 0 0 chr1 118495946 118496023 -124168330 + LTR10C LTR ERV1 515 591 0 351 0 0 0 chr1 118496582 118496621 -124167732 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5164 68 3 3 chr1 118497066 118497724 -124166629 + PABL_A LTR ERV1 1 658 -2 182 283 22 0 chr1 118500830 118500876 -124163477 + MIR SINE MIR 209 255 -7 504 278 50 40 chr1 118501410 118501608 -124162745 - MIR SINE MIR -3 259 60 2038 120 0 0 chr1 118501981 118502280 -124162073 - AluSx SINE Alu -2 310 12 1984 105 14 0 chr1 118502817 118503103 -124161250 - AluSq SINE Alu -10 303 14 234 313 130 39 chr1 118503554 118503762 -124160591 + MIR SINE MIR 36 262 0 359 271 90 58 chr1 118505003 118505085 -124159268 - HAL1 LINE L1 -826 1681 1603 2261 139 20 0 chr1 118505085 118505438 -124158915 - THE1B LTR MaLR -4 360 1 359 271 90 58 chr1 118505438 118505543 -124158810 - HAL1 LINE L1 -904 1603 1488 22 0 0 0 chr1 118505556 118505578 -124158775 + AT_rich Low_complexity Low_complexity 1 22 0 1787 150 0 7 chr1 118505578 118505864 -124158489 - AluSg SINE Alu -26 284 1 260 216 54 27 chr1 118506063 118506137 -124158216 + HERV9 LTR ERV1 2658 2733 -5666 235 208 0 0 chr1 118506142 118506190 -124158163 - MLT1G LTR MaLR -81 509 462 2247 247 93 31 chr1 118506232 118507045 -124157308 + L1ME3 LINE L1 5297 6160 -2 384 251 24 78 chr1 118507061 118507228 -124157125 + L2 LINE L2 3152 3309 -4 1925 158 0 0 chr1 118507353 118507657 -124156696 - AluSx SINE Alu -8 304 1 1955 125 0 3 chr1 118507686 118507982 -124156371 + AluSc SINE Alu 1 295 -14 246 269 108 48 chr1 118508133 118508319 -124156034 - L1ME LINE L1 -418 5703 5507 1909 129 0 24 chr1 118508392 118508710 -124155643 + AluSx SINE Alu 1 312 0 1814 198 59 34 chr1 118508960 118509400 -124154953 + MLT2B2 LTR ERVL 1 451 -64 720 254 45 5 chr1 118510405 118510606 -124153747 - MER20 DNA MER1_type -1 218 10 26 0 0 0 chr1 118510640 118510666 -124153687 + AT_rich Low_complexity Low_complexity 1 26 0 2015 83 0 0 chr1 118511431 118511726 -124152627 - AluY SINE Alu 0 312 18 197 296 0 0 chr1 118512778 118512832 -124151521 + L2 LINE L2 3219 3272 0 4320 60 4 7 chr1 118512850 118513373 -124150980 + LTR10C LTR ERV1 1 521 -70 5152 49 5 10 chr1 118513373 118514404 -124149949 + MER11A LTR ERVK 1 1266 0 24214 69 6 11 chr1 118514404 118517452 -124146901 + HERVK11 LTR ERVK 1 3033 -4920 15112 50 30 0 chr1 118517462 118519281 -124145072 + HERVK11 LTR ERVK 5331 7203 -750 787 53 0 0 chr1 118519284 118519379 -124144974 + HERVK11 LTR ERVK 7859 7953 0 5006 54 10 4 chr1 118519379 118520402 -124143951 + MER11A LTR ERVK 1 1266 0 595 79 0 0 chr1 118520402 118520475 -124143878 + LTR10C LTR ERV1 519 591 0 221 0 0 33 chr1 118521031 118521061 -124143292 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5093 72 6 3 chr1 118521508 118522164 -124142189 + PABL_A LTR ERV1 1 658 -2 189 333 0 0 chr1 118525503 118525551 -124138802 + MIR SINE MIR 208 255 -7 464 343 20 10 chr1 118526082 118526283 -124138070 - MIR SINE MIR 0 262 60 315 310 83 50 chr1 118527664 118527896 -124136457 + MIR SINE MIR 23 262 0 1772 123 48 14 chr1 118529679 118529972 -124134381 + AluJb SINE Alu 2 304 -8 859 225 28 22 chr1 118530167 118530349 -124134004 - MER58A DNA MER1_type 0 224 42 4350 175 42 10 chr1 118530351 118531219 -124133134 + L1MB3 LINE L1 5289 6183 0 470 269 153 60 chr1 118531794 118532095 -124132258 - MLT1J2 LTR MaLR -38 412 84 766 286 112 51 chr1 118532322 118532690 -124131663 - LTR67 LTR ERVL -54 503 113 1373 218 139 47 chr1 118532690 118533158 -124131195 - MLT1J LTR MaLR 0 511 1 362 241 84 0 chr1 118533158 118533209 -124131144 - LTR67 LTR ERVL -460 97 40 901 201 37 0 chr1 118533490 118533654 -124130699 + FAM SINE Alu 1 170 -5 1764 131 6 54 chr1 118534323 118534636 -124129717 - AluJb SINE Alu -14 298 1 1083 198 21 25 chr1 118535090 118535327 -124129026 - MER4B LTR ERV1 0 610 375 * 1296 143 0 15 chr1 118535319 118535522 -124128831 + MER4A LTR ERV1 442 641 -23 1944 134 0 13 chr1 118535522 118535821 -124128532 + AluSx SINE Alu 1 295 -17 276 30 0 0 chr1 118535821 118535854 -124128499 + (GGGAA)n Simple_repeat Simple_repeat 2 34 0 245 93 0 124 chr1 118536075 118536172 -124128181 + (CAAGG)n Simple_repeat Simple_repeat 1 85 0 252 59 0 0 chr1 118536180 118536214 -124128139 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 2233 93 87 0 chr1 118536255 118536576 -124127777 - MER4-int LTR ERV1 -742 5856 5508 3238 109 5 2 chr1 118536576 118537007 -124127346 + LTR3 LTR ERVK 1 432 0 5270 216 15 13 chr1 118537007 118538229 -124126124 + HERVK3 LTR ERVK 40 1300 -5943 483 78 0 0 chr1 118538233 118538297 -124126056 - HERVH LTR ERV1 -7649 64 1 2062 109 79 5 chr1 118538297 118538664 -124125689 - LTR7 LTR ERV1 0 450 1 3322 239 49 64 chr1 118538666 118539713 -124124640 - MER4A-int LTR ERV1 -4732 1866 836 266 75 0 0 chr1 118539790 118539830 -124124523 - MER4A-int LTR ERV1 -5872 726 687 2127 122 0 0 chr1 118539834 118540130 -124124223 - AluSc SINE Alu -13 296 1 378 122 14 14 chr1 118540139 118540213 -124124140 - MER4A-int LTR ERV1 -5774 824 751 2759 125 55 19 chr1 118540573 118541183 -124123170 - MER4A-int LTR ERV1 -5925 673 1 1764 152 3 49 chr1 118541186 118541548 -124122805 - MER4A LTR ERV1 0 664 261 539 124 31 21 chr1 118541548 118541645 -124122708 - MER4A LTR ERV1 -566 98 1 402 306 41 8 chr1 118541913 118542034 -124122319 - L2 LINE L2 -25 3288 3164 685 293 108 28 chr1 118542152 118542476 -124121877 - MLT1I LTR MaLR -47 362 13 446 254 207 42 chr1 118542618 118542655 -124121698 - MIR SINE MIR -13 249 219 1995 146 0 0 chr1 118542655 118542949 -124121404 - AluSx SINE Alu -18 294 1 446 254 207 42 chr1 118542949 118542982 -124121371 - MIR SINE MIR -43 219 193 1879 200 89 32 chr1 118542982 118543443 -124120910 - LTR2B LTR ERV1 0 490 4 446 254 207 42 chr1 118543443 118543584 -124120769 - MIR SINE MIR -69 193 2 293 305 70 31 chr1 118543665 118543793 -124120560 - L2 LINE L2 -493 2821 2689 1282 230 53 29 chr1 118544681 118545184 -124119169 + MLT1E LTR MaLR 1 564 -29 792 191 54 36 chr1 118545197 118545400 -124118953 - MER61D LTR ERV1 -10 492 297 1429 175 30 27 chr1 118546516 118546813 -124117540 - AluJo SINE Alu -14 298 1 442 273 211 37 chr1 118546886 118546972 -124117381 - L1MC/D LINE L1 -414 5752 5682 2494 68 0 0 chr1 118546972 118547279 -124117074 - AluSc SINE Alu -2 307 1 442 273 211 37 chr1 118547279 118547487 -124116866 - L1MC/D LINE L1 -484 5682 5409 312 71 18 71 chr1 118547709 118547765 -124116588 - MER41B LTR ERV1 -102 533 481 789 209 138 91 chr1 118549877 118550177 -124114176 - Charlie4a DNA MER1_type -1453 508 175 2022 141 3 3 chr1 118550177 118550489 -124113864 + AluJb SINE Alu 1 312 0 789 209 138 91 chr1 118550489 118550672 -124113681 - Charlie4a DNA MER1_type -1786 175 2 1096 233 23 81 chr1 118552580 118552927 -124111426 - L2 LINE L2 0 3313 2987 1161 192 108 19 chr1 118553215 118553522 -124110831 - L2 LINE L2 -1101 2213 1880 461 183 71 79 chr1 118553937 118554063 -124110290 - MIR SINE MIR -1 261 137 222 231 0 0 chr1 118554064 118554116 -124110237 + T-rich Low_complexity Low_complexity 1 52 0 7121 30 4 0 chr1 118554119 118554950 -124109403 - L1PA4 LINE L1 -3 6152 5319 1701 52 97 78 chr1 118555064 118555333 -124109020 - LTR12 LTR ERV1 -440 274 1 2063 120 3 13 chr1 118556661 118556970 -124107383 + AluSx SINE Alu 1 306 -6 2285 85 3 3 chr1 118556972 118557278 -124107075 + AluSp SINE Alu 1 306 -7 580 301 20 10 chr1 118557278 118557474 -124106879 - MIR SINE MIR -5 257 60 2309 93 0 0 chr1 118557843 118558143 -124106210 - AluSx SINE Alu -12 300 1 1885 92 4 0 chr1 118558608 118558859 -124105494 - AluSq SINE Alu -48 265 14 233 313 130 39 chr1 118559310 118559518 -124104835 + MIR SINE MIR 36 262 0 459 246 102 15 chr1 118560694 118560841 -124103512 - HAL1 LINE L1 -650 1857 1724 2303 128 23 3 chr1 118560841 118561194 -124103159 - THE1B LTR MaLR -4 360 1 459 246 102 15 chr1 118561194 118561310 -124103043 - HAL1 LINE L1 -783 1724 1474 21 0 0 0 chr1 118561311 118561332 -124103021 + AT_rich Low_complexity Low_complexity 1 21 0 1744 144 3 7 chr1 118561339 118561624 -124102729 - AluSg SINE Alu -26 284 1 2149 253 98 21 chr1 118561975 118562777 -124101576 + L1ME3 LINE L1 5297 6160 -2 433 239 19 75 chr1 118562835 118562994 -124101359 + L2 LINE L2 3160 3309 -4 1882 143 26 13 chr1 118563103 118563410 -124100943 - AluSx SINE Alu -1 311 1 1795 128 3 48 chr1 118563438 118563751 -124100602 + AluSc SINE Alu 1 299 -10 395 344 69 22 chr1 118563792 118564068 -124100285 - L1ME LINE L1 -305 5816 5528 2171 104 0 23 chr1 118564160 118564467 -124099886 + AluSx SINE Alu 1 300 -12 1900 182 47 79 chr1 118564714 118565246 -124099107 + MLT2B2 LTR ERVL 1 515 0 720 254 45 5 chr1 118566173 118566374 -124097979 - MER20 DNA MER1_type -1 218 10 26 0 0 0 chr1 118566408 118566434 -124097919 + AT_rich Low_complexity Low_complexity 1 26 0 2051 75 0 0 chr1 118567199 118567494 -124096859 - AluY SINE Alu 0 312 18 197 296 0 0 chr1 118568546 118568600 -124095753 + L2 LINE L2 3219 3272 0 4280 60 6 7 chr1 118568618 118569140 -124095213 + LTR10C LTR ERV1 1 521 -70 5152 49 5 10 chr1 118569140 118570171 -124094182 + MER11A LTR ERVK 1 1266 0 24205 69 6 11 chr1 118570171 118573219 -124091134 + HERVK11 LTR ERVK 1 3033 -4920 15074 50 30 0 chr1 118573229 118575047 -124089306 + HERVK11 LTR ERVK 5331 7203 -750 787 53 0 0 chr1 118575050 118575145 -124089208 + HERVK11 LTR ERVK 7859 7953 0 1521 51 10 14 chr1 118575145 118575412 -124088941 + MER11A LTR ERVK 1 363 -903 228 182 0 0 chr1 118575645 118575689 -124088664 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1473 245 42 40 chr1 118575813 118576262 -124088091 + MLT1J2 LTR MaLR 1 450 0 356 295 102 18 chr1 118577098 118577264 -124087089 - MIR3 SINE MIR -23 185 6 667 321 74 37 chr1 118628591 118628968 -124035385 - MLT1K LTR MaLR -66 522 132 2071 122 11 0 chr1 118629056 118629358 -124034995 - AluSp SINE Alu 0 305 1 344 238 36 0 chr1 118629553 118629637 -124034716 - L1ME LINE L1 -468 5653 5567 225 295 141 26 chr1 118629884 118630040 -124034313 - L2 LINE L2 -181 3091 2918 414 291 60 8 chr1 118630191 118630325 -124034028 + MIR SINE MIR 7 147 -115 2237 111 30 0 chr1 118631352 118631649 -124032704 + AluSx SINE Alu 1 306 -6 230 241 0 72 chr1 118631785 118631868 -124032485 - MER69 DNA AcHobo -3 2523 2447 * 492 182 121 0 chr1 118631862 118631961 -124032392 - MER69 DNA AcHobo -1079 147 37 2611 55 0 7 chr1 118632067 118632377 -124031976 + AluY SINE Alu 1 308 -3 321 287 50 0 chr1 118632386 118632487 -124031866 + MIR SINE MIR 84 189 -73 239 259 50 63 chr1 118632836 118633021 -124031332 + MIR3 SINE MIR 15 196 -66 371 284 82 22 chr1 118634281 118634415 -124029938 - MIR SINE MIR -108 154 13 383 256 44 38 chr1 118634636 118634796 -124029557 + MIR SINE MIR 66 226 -36 385 245 10 10 chr1 118635164 118635262 -124029091 + MLT2F LTR ERVL 37 134 -529 262 271 93 37 chr1 118635303 118635410 -124028943 + MLT2F LTR ERVL 231 343 -320 786 338 24 6 chr1 118635564 118635892 -124028461 - L3 LINE CR1 -578 999 666 6458 154 16 31 chr1 118635904 118637068 -124027285 + L1P LINE L1 11 1156 -4990 5267 87 50 3 chr1 118637068 118637813 -124026540 - LTR17 LTR ERV1 0 780 1 2320 52 14 0 chr1 118637813 118638101 -124026252 - HERV17 LTR ERV1 0 8626 8335 271 75 0 0 chr1 118638091 118638131 -124026222 - HERV17 LTR ERV1 -1078 7548 7509 * 7881 54 6 3 chr1 118638123 118639138 -124025215 - HERV17 LTR ERV1 -2607 6019 5002 278 95 0 0 chr1 118639238 118639280 -124025073 + MER69 DNA AcHobo 106 147 -1079 230 241 0 72 chr1 118639274 118639357 -124024996 + MER69 DNA AcHobo 2447 2523 -3 * 2228 114 30 0 chr1 118639492 118639789 -124024564 - AluSx SINE Alu -6 306 1 321 289 19 95 chr1 118640332 118640543 -124023810 + L2 LINE L2 2877 3071 -201 1897 132 66 0 chr1 118640767 118641040 -124023313 + AluSx SINE Alu 2 292 -20 259 283 73 84 chr1 118641208 118641224 -124023129 - MLT1J1 LTR MaLR -231 204 189 1808 201 143 36 chr1 118641224 118641755 -124022598 - MLT1G LTR MaLR -2 588 1 259 283 73 84 chr1 118641755 118641852 -124022501 - MLT1J1 LTR MaLR -246 189 63 210 67 0 0 chr1 118641885 118641893 -124022460 + (GAA)n Simple_repeat Simple_repeat 1 8 -22 1828 171 47 0 chr1 118641893 118642191 -124022162 + AluJo SINE Alu 1 312 0 210 67 0 0 chr1 118642191 118642212 -124022141 + (GAA)n Simple_repeat Simple_repeat 7 30 0 2128 129 0 0 chr1 118642448 118642474 -124021879 - AluSx SINE Alu -1 311 286 244 0 0 0 chr1 118642474 118642501 -124021852 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2128 129 0 0 chr1 118642501 118642785 -124021568 - AluSx SINE Alu -25 287 1 755 266 95 49 chr1 118643099 118643311 -124021042 + L1MC4a LINE L1 5478 5679 -2129 2386 90 0 0 chr1 118643311 118643622 -124020731 + AluSx SINE Alu 1 311 -1 755 266 95 49 chr1 118643622 118643819 -124020534 + L1MC4a LINE L1 5679 5906 -1902 1362 140 52 4 chr1 118643923 118644152 -124020201 - MER41B LTR ERV1 -265 370 131 183 345 36 24 chr1 118644938 118645022 -124019331 - L3 LINE CR1 -1412 165 81 348 343 73 11 chr1 118645491 118645669 -124018684 - L2 LINE L2 -18 3295 3107 687 158 38 0 chr1 118645767 118645900 -124018453 + L1MC1 LINE L1 5292 5429 -915 * 1457 166 48 58 chr1 118645897 118646210 -124018143 + L1MC1 LINE L1 6018 6327 -6 530 316 85 78 chr1 118646245 118646774 -124017579 - L2 LINE L2 -338 2976 2444 835 210 174 5 chr1 118647097 118647316 -124017037 - MIR SINE MIR 0 262 7 2140 103 27 0 chr1 118647426 118647727 -124016626 + AluSc SINE Alu 1 309 0 183 204 0 0 chr1 118647825 118647869 -124016484 + GA-rich Low_complexity Low_complexity 1 44 0 1738 134 3 41 chr1 118647884 118648175 -124016178 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr1 118648175 118648198 -124016155 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 300 221 26 97 chr1 118648458 118648571 -124015782 + MER5B DNA MER1_type 66 170 -8 210 37 0 0 chr1 118649042 118649069 -124015284 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2197 81 0 3 chr1 118649070 118649353 -124015000 - AluSc SINE Alu -27 282 1 1222 130 19 39 chr1 118649785 118649992 -124014361 + AluJo SINE Alu 86 288 -24 2259 98 7 0 chr1 118650074 118650380 -124013973 - AluSx SINE Alu -4 308 1 235 158 88 0 chr1 118650455 118650512 -124013841 - L1MC1 LINE L1 -8 6325 6264 * 728 279 55 38 chr1 118650509 118650874 -124013479 - L1ME4a LINE L1 -229 5892 5522 749 200 52 48 chr1 118650897 118651084 -124013269 + MLT1D LTR MaLR 2 188 -292 1576 227 88 38 chr1 118651816 118652296 -124012057 + MLT1D LTR MaLR 2 505 0 824 285 8 8 chr1 118652948 118653208 -124011145 - MIR SINE MIR -1 261 2 310 265 137 8 chr1 118653755 118653872 -124010481 + MIR3 SINE MIR 23 154 -54 196 301 108 0 chr1 118654023 118654106 -124010247 + MIR SINE MIR 116 207 -55 237 294 129 32 chr1 118655822 118655991 -124008362 - MIR SINE MIR -12 250 17 204 286 206 16 chr1 118656588 118656714 -124007639 - L2 LINE L2 -191 3081 2932 1822 161 59 3 chr1 118656757 118657079 -124007274 - MER2 DNA MER2_type -5 340 1 263 280 237 17 chr1 118657196 118657314 -124007039 - L2 LINE L2 -559 2755 2612 1919 124 3 10 chr1 118658499 118658790 -124005563 + AluSg SINE Alu 1 289 -21 992 96 29 0 chr1 118658792 118658928 -124005425 + LTR23 LTR ERV1 298 437 0 1314 177 53 88 chr1 118658942 118659338 -124005015 + MLT1B LTR MaLR 6 387 -3 303 331 159 6 chr1 118659493 118659656 -124004697 + L3 LINE CR1 462 649 -928 8361 62 4 0 chr1 118659663 118661496 -124002857 - L1PA6 LINE L1 -1 6153 4299 15837 76 12 6 chr1 118661496 118663660 -124000693 - L1PA6 LINE L1 -2815 3331 1154 2429 70 0 10 chr1 118663661 118663975 -124000378 + LTR17 LTR ERV1 1 311 -469 7903 60 4 6 chr1 118663977 118664952 -123999401 + HERV17 LTR ERV1 1044 2016 -6610 * 12291 57 3 1 chr1 118664935 118666404 -123997949 + HERV17 LTR ERV1 2430 3902 -4724 294 100 20 0 chr1 118666726 118666776 -123997577 + L1MB4 LINE L1 6128 6178 -2 1549 139 92 7 chr1 118666832 118667105 -123997248 + AluJo SINE Alu 6 301 -11 351 0 0 0 chr1 118667329 118667368 -123996985 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1628 117 92 0 chr1 118667368 118667617 -123996736 - AluSx SINE Alu -40 272 1 271 239 90 75 chr1 118669158 118669292 -123995061 + LTR33 LTR ERVL 27 162 -359 278 219 143 0 chr1 118669331 118669436 -123994917 + LTR33 LTR ERVL 235 354 -167 303 274 0 29 chr1 118669467 118669569 -123994784 + LTR33 LTR ERVL 414 512 -9 337 234 0 0 chr1 118670242 118670306 -123994047 + L2 LINE L2 3204 3267 -5 344 251 147 2 chr1 118670408 118670537 -123993816 + MIR SINE MIR 19 163 -62 1168 203 161 25 chr1 118670537 118670879 -123993474 - MLT1E2 LTR MaLR -4 622 206 2394 75 0 3 chr1 118670916 118671224 -123993129 - AluSq SINE Alu -6 307 1 301 81 0 0 chr1 118671238 118671275 -123993078 - U6 snRNA snRNA -5 102 66 536 248 59 33 chr1 118671289 118671442 -123992911 - MLT1E2 LTR MaLR -427 166 10 220 265 277 0 chr1 118671448 118671531 -123992822 + MIR SINE MIR 146 251 -11 2018 70 0 0 chr1 118672123 118672380 -123991973 - AluY SINE Alu -54 257 1 316 303 218 10 chr1 118672502 118672704 -123991649 - MIR3 SINE MIR -14 248 7 2159 85 48 0 chr1 118677043 118677338 -123987015 + AluSg SINE Alu 2 310 0 1983 131 13 0 chr1 118677494 118677792 -123986561 + AluSq SINE Alu 1 302 -11 1786 108 72 4 chr1 118678216 118678493 -123985860 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 118678571 118678592 -123985761 + AT_rich Low_complexity Low_complexity 1 21 0 398 298 14 23 chr1 118678706 118679013 -123985340 + L1MC/D LINE L1 5124 5431 -744 1865 137 0 11 chr1 118679062 118679475 -123984878 - AluSx SINE Alu 0 410 1 236 225 84 14 chr1 118680022 118680093 -123984260 - MER94 DNA DNA -3 131 56 757 214 16 50 chr1 118680442 118680478 -123983875 - MIR SINE MIR -86 176 140 2223 102 3 0 chr1 118680478 118680773 -123983580 - AluSq SINE Alu -17 296 1 757 214 16 50 chr1 118680773 118680918 -123983435 - MIR SINE MIR -122 140 1 492 278 298 0 chr1 118681617 118681815 -123982538 - MIR SINE MIR 0 262 6 328 275 54 120 chr1 118682596 118682721 -123981632 - MIR SINE MIR -3 259 162 1863 161 0 0 chr1 118682721 118683012 -123981341 - AluSx SINE Alu -16 296 6 328 275 54 120 chr1 118683012 118683139 -123981214 - MIR SINE MIR -100 162 28 381 338 15 0 chr1 118683864 118683997 -123980356 - MIR SINE MIR -9 253 119 208 130 65 43 chr1 118684422 118684468 -123979885 + L2 LINE L2 3254 3300 -13 2080 126 0 0 chr1 118685237 118685538 -123978815 - AluSx SINE Alu -11 301 1 2161 161 59 75 chr1 118685609 118685842 -123978511 - L1MB2 LINE L1 -2 6169 5934 1765 135 3 17 chr1 118685842 118686130 -123978223 - AluJb SINE Alu -26 286 3 2161 161 59 75 chr1 118686130 118686406 -123977947 - L1MB2 LINE L1 -237 5934 5671 5303 72 18 9 chr1 118686619 118687064 -123977289 + LTR8 LTR ERV1 1 456 -235 2135 103 3 3 chr1 118687064 118687364 -123976989 - AluSg SINE Alu -10 300 1 5303 72 18 9 chr1 118687364 118687603 -123976750 + LTR8 LTR ERV1 456 691 0 37409 81 39 20 chr1 118687603 118689159 -123975194 + HUERS-P1 LTR ERV1 1 1526 -4737 1613 120 112 14 chr1 118689159 118689435 -123974918 - AluSq SINE Alu -10 303 1 37409 81 39 20 chr1 118689435 118692185 -123972168 + HUERS-P1 LTR ERV1 1526 4511 -1752 1428 168 110 63 chr1 118692185 118692613 -123971740 - LTR7 LTR ERV1 -2 448 1 37409 81 39 20 chr1 118692613 118694401 -123969952 + HUERS-P1 LTR ERV1 4511 6263 0 5156 77 39 0 chr1 118694401 118695066 -123969287 + LTR8 LTR ERV1 1 691 0 362 228 16 71 chr1 118695346 118695473 -123968880 + MER112 DNA MER1_type 33 152 -108 281 225 175 0 chr1 118695476 118695556 -123968797 + MER5C DNA MER1_type 1 94 -230 4303 127 73 13 chr1 118695568 118696322 -123968031 + L1MB8 LINE L1 5379 6177 -1 2391 83 0 10 chr1 118696332 118696645 -123967708 + AluY SINE Alu 1 310 -1 430 232 0 64 chr1 118696708 118696801 -123967552 + MER5C DNA MER1_type 208 293 -31 1676 124 0 0 chr1 118696801 118697027 -123967326 + AluSg/x SINE Alu 76 301 -9 430 232 0 64 chr1 118697027 118697058 -123967295 + MER5C DNA MER1_type 293 324 0 31 20 0 20 chr1 118697074 118697092 -123967261 + AT_rich Low_complexity Low_complexity 1 18 -30 15872 21 2 0 chr1 118697092 118699682 -123964671 + L1PA3 LINE L1 3560 6151 -4 31 20 0 20 chr1 118699682 118699712 -123964641 + AT_rich Low_complexity Low_complexity 18 48 0 281 243 40 0 chr1 118699712 118699786 -123964567 + MER112 DNA MER1_type 178 254 -6 223 352 104 49 chr1 118699953 118700300 -123964053 + L2 LINE L2 2890 3255 -17 997 259 15 8 chr1 118701066 118701325 -123963028 + MIR SINE MIR 2 262 0 273 273 116 33 chr1 118701415 118701536 -123962817 - MIR SINE MIR -32 230 100 1032 159 4 21 chr1 118701726 118701954 -123962399 + MER84 LTR ERVI 1 159 -348 1675 122 0 25 chr1 118701954 118702228 -123962125 - AluSg SINE Alu 0 319 52 1911 130 68 12 chr1 118702390 118702728 -123961625 + MER84 LTR ERVI 147 503 -4 2054 163 3 0 chr1 118703400 118703707 -123960646 + AluJo SINE Alu 1 308 -4 2229 111 3 3 chr1 118703836 118704133 -123960220 - AluSx SINE Alu -14 298 2 231 337 20 0 chr1 118704164 118704265 -123960088 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 551 249 55 55 chr1 118705159 118705360 -123958993 - L3 LINE CR1 -247 1330 1130 946 177 35 10 chr1 118705386 118705584 -123958769 + L1MC4a LINE L1 7508 7710 -98 2296 107 3 19 chr1 118705705 118706013 -123958340 - AluSx SINE Alu -9 303 1 264 263 9 61 chr1 118706394 118706508 -123957845 + MLT1K LTR MaLR 471 578 -10 196 287 96 51 chr1 118707425 118707582 -123956771 + MER5B DNA MER1_type 7 170 -8 950 286 28 4 chr1 118708141 118708396 -123955957 - MIR SINE MIR 0 262 2 341 349 84 23 chr1 118708534 118708626 -123955727 + HAL1 LINE L1 1240 1325 -1182 2113 124 10 0 chr1 118708626 118708916 -123955437 + AluSx SINE Alu 20 312 0 341 349 84 23 chr1 118708916 118709038 -123955315 + HAL1 LINE L1 1325 1467 -1040 326 292 52 42 chr1 118709751 118709977 -123954376 + L1MC/D LINE L1 5493 5724 -397 476 355 5 0 chr1 118710478 118710664 -123953689 - L1ME4a LINE L1 -262 5859 5673 537 248 29 113 chr1 118711805 118712115 -123952238 + L2 LINE L2 3011 3294 -19 733 197 8 0 chr1 118712200 118712327 -123952026 - FLAM_A SINE Alu -4 129 2 225 257 75 17 chr1 118712716 118712823 -123951530 - MIR SINE MIR -55 153 39 194 206 79 16 chr1 118713291 118713354 -123950999 + MIR SINE MIR 123 189 -73 2389 82 3 7 chr1 118713486 118713789 -123950564 + AluSq SINE Alu 1 302 -11 1084 236 190 10 chr1 118713941 118714357 -123949996 - L2 LINE L2 -421 2893 2403 307 270 191 11 chr1 118714378 118714556 -123949797 - MIR SINE MIR -19 243 34 240 268 412 0 chr1 118715338 118715491 -123948862 - MIR SINE MIR -19 243 28 360 222 14 0 chr1 118717063 118717135 -123947218 - MIR SINE MIR -129 133 61 282 222 0 0 chr1 118718964 118719027 -123945326 + L1MC/D LINE L1 5696 5758 -2027 248 282 94 0 chr1 118719469 118719554 -123944799 - MIR SINE MIR -76 132 40 357 355 67 24 chr1 118720751 118721168 -123943185 + L2 LINE L2 1877 2311 -1003 1137 314 196 30 chr1 118721585 118722400 -123941953 - L2 LINE L2 -2 3270 2592 1056 131 38 6 chr1 118722400 118722583 -123941770 - MER53 DNA DNA 0 189 1 1137 314 196 30 chr1 118722583 118723292 -123941061 - L2 LINE L2 -680 2592 2002 2195 117 0 19 chr1 118723292 118723601 -123940752 - AluSx SINE Alu -9 303 1 1137 314 196 30 chr1 118723601 118724291 -123940062 - L2 LINE L2 -1270 2002 664 194 367 116 12 chr1 118724866 118725125 -123939228 + L2 LINE L2 2678 2963 -351 379 308 127 55 chr1 118725299 118725552 -123938801 - L2 LINE L2 -2 3270 3000 238 370 52 13 chr1 118725574 118725728 -123938625 + L2 LINE L2 3106 3265 -7 245 294 8 24 chr1 118726951 118727067 -123937286 + MIR SINE MIR 37 147 -62 1242 251 100 49 chr1 118727152 118727812 -123936541 - L2 LINE L2 -3 3310 2608 595 261 197 31 chr1 118728280 118728636 -123935717 - L2 LINE L2 -27 3286 2872 408 329 124 38 chr1 118728655 118729286 -123935067 + L2 LINE L2 2586 3271 -1 195 311 162 30 chr1 118729362 118729658 -123934695 - L2 LINE L2 -359 2955 2621 1169 248 77 19 chr1 118731207 118731570 -123932783 + L2 LINE L2 2930 3313 0 707 208 40 0 chr1 118731631 118731780 -123932573 + MER58A DNA MER1_type 1 155 0 335 314 106 67 chr1 118731847 118732188 -123932165 + L2 LINE L2 2906 3259 -13 2237 109 0 26 chr1 118732189 118732491 -123931862 + AluSx SINE Alu 1 294 -18 340 104 0 0 chr1 118732554 118732602 -123931751 + MER58 DNA MER1_type 2373 2420 0 810 199 50 22 chr1 118732602 118732783 -123931570 - MIR SINE MIR -64 198 13 1659 161 89 47 chr1 118733143 118733523 -123930830 - MSTD LTR MaLR 0 396 1 1975 110 70 0 chr1 118733603 118733876 -123930477 + AluSq SINE Alu 4 295 -18 270 0 0 0 chr1 118733999 118734029 -123930324 + (CA)n Simple_repeat Simple_repeat 2 31 0 222 287 278 0 chr1 118734363 118734478 -123929875 - MIR SINE MIR -48 214 68 299 306 123 54 chr1 118734905 118735310 -123929043 + L2 LINE L2 2827 3259 -13 290 265 202 59 chr1 118735881 118736168 -123928185 - L2 LINE L2 0 3272 2945 222 266 154 62 chr1 118736689 118736948 -123927405 + L2 LINE L2 2694 2976 -338 246 330 214 0 chr1 118737004 118737107 -123927246 + L2 LINE L2 3148 3272 0 427 338 111 23 chr1 118737772 118737988 -123926365 - MIR SINE MIR 0 262 28 387 344 20 7 chr1 118738033 118738184 -123926169 - MIR SINE MIR -51 211 59 898 276 0 53 chr1 118738956 118739034 -123925319 - MIR SINE MIR -30 232 151 2463 53 0 0 chr1 118739034 118739343 -123925010 - AluY SINE Alu 0 309 1 898 276 0 53 chr1 118739343 118739506 -123924847 - MIR SINE MIR -111 151 3 186 245 57 0 chr1 118740089 118740142 -123924211 + L2 LINE L2 3217 3272 0 451 194 19 19 chr1 118741106 118741261 -123923092 + GA-rich Low_complexity Low_complexity 3 157 0 224 114 45 0 chr1 118741294 118741338 -123923015 + GA-rich Low_complexity Low_complexity 4 49 0 553 307 57 22 chr1 118742343 118742571 -123921782 - MIR SINE MIR -17 245 10 537 254 124 6 chr1 118742605 118742782 -123921571 - MIR SINE MIR -1 261 64 201 286 20 0 chr1 118742784 118742833 -123921520 - MIR SINE MIR -168 94 45 316 229 114 0 chr1 118743109 118743179 -123921174 + L2 LINE L2 3235 3312 -1 205 319 164 9 chr1 118743195 118743311 -123921042 - L2 LINE L2 -2 3270 3137 382 244 62 62 chr1 118743417 118743577 -123920776 - L2 LINE L2 -181 3091 2932 312 83 0 0 chr1 118744549 118744597 -123919756 + (TG)n Simple_repeat Simple_repeat 2 49 0 201 39 0 0 chr1 118744791 118744817 -123919536 + (CGAG)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr1 118744858 118744881 -123919472 + GC_rich Low_complexity Low_complexity 1 23 0 27 87 0 0 chr1 118744901 118744970 -123919383 + GC_rich Low_complexity Low_complexity 1 69 0 228 175 0 0 chr1 118747932 118747972 -123916381 - L2 LINE L2 -217 3055 3016 346 217 141 82 chr1 118749107 118749291 -123915062 - L3 LINE CR1 -2 1575 1381 238 260 370 0 chr1 118749812 118749966 -123914387 - MIR SINE MIR -21 241 31 268 284 179 27 chr1 118750077 118750334 -123914019 + L2 LINE L2 2487 2782 -532 241 372 58 19 chr1 118751499 118751655 -123912698 - L2 LINE L2 0 3272 3111 652 266 4 71 chr1 118751683 118751909 -123912444 - L2 LINE L2 -1 3312 3102 1492 269 157 57 chr1 118751944 118753014 -123911339 - L2 LINE L2 -173 3099 1908 1786 189 33 0 chr1 118753139 118753441 -123910912 - AluJb SINE Alu 0 312 1 373 315 8 16 chr1 118753476 118753590 -123910763 - MER5A DNA MER1_type -2 187 73 1718 110 4 0 chr1 118753590 118753827 -123910526 + AluSx SINE Alu 1 238 -74 373 315 8 16 chr1 118753827 118753839 -123910514 - MER5A DNA MER1_type -116 73 62 279 0 0 0 chr1 118753840 118753871 -123910482 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1035 138 13 0 chr1 118754186 118754338 -123910015 - AluJb SINE Alu -36 276 123 1388 94 0 0 chr1 118754339 118754509 -123909844 - AluSg SINE Alu -140 170 1 290 372 20 0 chr1 118754703 118754851 -123909502 - L2 LINE L2 -1153 2161 2011 648 326 44 39 chr1 118754973 118755567 -123908786 + L2 LINE L2 2671 3270 -2 2867 239 104 18 chr1 118759595 118760441 -123903912 - L3 LINE CR1 -8 1569 651 191 309 0 103 chr1 118760703 118760829 -123903524 + L2 LINE L2 3153 3265 -7 206 182 36 0 chr1 118760905 118760960 -123903393 + (ACTG)n Simple_repeat Simple_repeat 3 59 0 255 344 11 0 chr1 118760976 118761069 -123903284 + (ACTG)n Simple_repeat Simple_repeat 1 94 0 627 217 29 51 chr1 118765533 118765708 -123898645 + MER5B DNA MER1_type 2 172 -6 885 163 48 0 chr1 118765735 118765901 -123898452 - MER3 DNA MER1_type -81 128 2 279 268 78 119 chr1 118766128 118766371 -123897982 + L2 LINE L2 3031 3263 -9 435 254 8 59 chr1 118766776 118766796 -123897557 + MIR SINE MIR 30 49 -159 1671 195 19 13 chr1 118766796 118767104 -123897249 + AluJb SINE Alu 1 310 -2 435 254 8 59 chr1 118767104 118767201 -123897152 + MIR SINE MIR 49 141 -67 2436 89 0 0 chr1 118767225 118767518 -123896835 + AluSx SINE Alu 1 293 -19 544 254 109 21 chr1 118768930 118769123 -123895230 - MIR SINE MIR -16 246 37 180 0 0 0 chr1 118770023 118770043 -123894310 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3780 229 27 51 chr1 118770043 118770364 -123893989 + L1M4c LINE L1 727 1054 -5509 2165 103 0 4 chr1 118770364 118770636 -123893717 + AluSc SINE Alu 19 289 -20 3780 229 27 51 chr1 118770636 118770906 -123893447 + L1M4c LINE L1 1054 1329 -5234 2350 109 3 0 chr1 118770906 118771208 -123893145 + AluSq SINE Alu 1 303 -10 3780 229 27 51 chr1 118771208 118771368 -123892985 + L1M4c LINE L1 1329 1491 -5072 2230 95 9 3 chr1 118771368 118771694 -123892659 - L1MA3 LINE L1 0 6305 5978 3780 229 27 51 chr1 118771694 118772368 -123891985 + L1M4c LINE L1 1491 2293 -4270 551 257 19 2 chr1 118772553 118772728 -123891625 - MIR SINE MIR -67 141 12 1753 138 3 82 chr1 118772810 118773129 -123891224 + AluJb SINE Alu 1 294 -18 663 215 80 29 chr1 118773130 118773404 -123890949 - L1MC5 LINE L1 -63 7898 7611 1076 229 43 16 chr1 118773405 118773728 -123890625 - L1MC5 LINE L1 -379 7582 7251 650 231 118 47 chr1 118773749 118773925 -123890428 + L1ME4a LINE L1 5730 5892 -229 2042 168 0 0 chr1 118773925 118774228 -123890125 + AluSx SINE Alu 1 303 -9 650 231 118 47 chr1 118774228 118774415 -123889938 + L1ME4a LINE L1 5892 6119 -2 3743 96 4 0 chr1 118774476 118774985 -123889368 + MER1A DNA MER1_type 19 529 0 333 231 13 13 chr1 118775521 118775599 -123888754 + MIR3 SINE MIR 117 194 -14 648 198 124 39 chr1 118775867 118775957 -123888396 - L1ME4a LINE L1 -1 6120 6039 2438 94 0 0 chr1 118775957 118776255 -123888098 + AluSx SINE Alu 1 298 -14 648 198 124 39 chr1 118776255 118776447 -123887906 - L1ME4a LINE L1 -82 6039 5814 484 149 0 0 chr1 118776601 118776675 -123887678 + MIR SINE MIR 85 158 -104 1847 111 58 0 chr1 118777234 118777495 -123886858 - AluY SINE Alu 0 311 36 2401 98 0 0 chr1 118777716 118778023 -123886330 - AluSq SINE Alu 0 313 7 280 279 125 0 chr1 118778783 118778887 -123885466 - MIR SINE MIR -60 202 86 409 288 45 18 chr1 118778913 118779024 -123885329 + L2 LINE L2 3141 3254 -18 1569 183 33 76 chr1 118779237 118779305 -123885048 - MLT1D LTR MaLR 0 505 436 2136 138 0 0 chr1 118779305 118779603 -123884750 + AluSx SINE Alu 1 298 -14 1569 183 33 76 chr1 118779603 118779989 -123884364 - MLT1D LTR MaLR -69 436 1 367 325 32 25 chr1 118780004 118780161 -123884192 + L2 LINE L2 3155 3312 -1 545 230 158 0 chr1 118781021 118781160 -123883193 - MIR SINE MIR -54 208 48 2306 119 0 3 chr1 118781160 118781471 -123882882 + AluSx SINE Alu 1 310 -2 263 315 73 38 chr1 118782377 118782666 -123881687 - L1ME4a LINE L1 -2191 5617 5319 1810 163 0 3 chr1 118782815 118783123 -123881230 + AluJb SINE Alu 1 307 0 2188 103 0 0 chr1 118783244 118783553 -123880800 + AluSx SINE Alu 1 309 0 1873 174 0 13 chr1 118783586 118783902 -123880451 - AluJb SINE Alu 0 312 1 207 0 0 0 chr1 118784077 118784100 -123880253 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 1140 274 72 45 chr1 118784100 118784712 -123879641 - L2 LINE L2 -13 3300 2671 765 336 88 54 chr1 118784788 118785251 -123879102 - L1ME4a LINE L1 -1499 4647 4148 2371 103 0 7 chr1 118785251 118785561 -123878792 - AluSg1 SINE Alu -1 308 1 765 336 88 54 chr1 118785561 118785835 -123878518 - L1ME4a LINE L1 -1998 4148 3885 1575 87 0 46 chr1 118786285 118786504 -123877849 - AluSg SINE Alu -101 209 1 306 316 142 0 chr1 118786802 118786957 -123877396 - MIR SINE MIR -34 228 52 595 242 17 51 chr1 118787258 118787436 -123876917 + MER5A DNA MER1_type 16 187 -2 1359 219 112 30 chr1 118787761 118788162 -123876191 + MLT1E LTR MaLR 152 585 -8 22 35 0 0 chr1 118788253 118788282 -123876071 + AT_rich Low_complexity Low_complexity 1 29 0 2234 201 71 59 chr1 118788285 118788551 -123875802 + L1ME1 LINE L1 5423 5684 -482 2208 97 42 0 chr1 118788551 118788839 -123875514 + AluSx SINE Alu 2 301 -11 2234 201 71 59 chr1 118788839 118789214 -123875139 + L1ME1 LINE L1 5684 6078 -88 2141 107 0 0 chr1 118789214 118789533 -123874820 - AluSc SINE Alu 0 319 1 2234 201 71 59 chr1 118789533 118789619 -123874734 + L1ME1 LINE L1 6078 6161 -5 310 237 128 19 chr1 118789744 118789900 -123874453 - L1MC4a LINE L1 -1928 5880 5708 691 256 58 61 chr1 118789913 118790276 -123874077 - L1MC4a LINE L1 -2181 5627 5266 250 274 14 14 chr1 118790277 118790350 -123874003 - LTR16A1 LTR ERVL -1 456 384 429 332 37 59 chr1 118790893 118791262 -123873091 - L1MC4a LINE L1 -872 5274 4919 243 0 0 0 chr1 118791692 118791719 -123872634 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 241 297 0 0 chr1 118791956 118792020 -123872333 + L2 LINE L2 3249 3312 -1 222 294 200 65 chr1 118792103 118792273 -123872080 + L2 LINE L2 3080 3272 0 530 241 93 31 chr1 118792388 118792550 -123871803 + MIR3 SINE MIR 9 180 -28 2023 92 53 11 chr1 118792676 118792957 -123871396 + AluSx SINE Alu 7 299 -13 476 287 74 57 chr1 118793030 118793260 -123871093 - MIR SINE MIR -27 235 2 289 284 0 0 chr1 118794545 118794619 -123869734 - MIR SINE MIR -6 256 183 188 259 74 19 chr1 118794672 118794726 -123869627 - MIR SINE MIR -77 185 129 1049 172 256 0 chr1 118794734 118794984 -123869369 - MSTC LTR MaLR -4 424 111 198 71 0 0 chr1 118795008 118795036 -123869317 + (T)n Simple_repeat Simple_repeat 1 28 0 2165 109 3 0 chr1 118795427 118795720 -123868633 + AluSx SINE Alu 1 294 -18 778 120 0 0 chr1 118795792 118795900 -123868453 - MSTC LTR MaLR -320 108 1 373 226 38 38 chr1 118795904 118796010 -123868343 - MIR SINE MIR -139 123 18 12520 178 42 30 chr1 118796388 118799432 -123864921 + L1MC1 LINE L1 84 3089 -3517 1980 176 41 27 chr1 118799432 118799801 -123864552 + MLT1A2 LTR MaLR 1 374 0 12520 178 42 30 chr1 118799801 118799894 -123864459 + L1MC1 LINE L1 3089 3179 -3427 2233 39 73 14 chr1 118799894 118800180 -123864173 + AluY SINE Alu 1 303 -8 12520 178 42 30 chr1 118800180 118800861 -123863492 + L1MC1 LINE L1 3179 3850 -2756 1908 121 11 7 chr1 118800861 118801133 -123863220 + AluJo SINE Alu 24 296 -16 12520 178 42 30 chr1 118801133 118802332 -123862021 + L1MC1 LINE L1 3850 5033 -1573 2223 114 7 0 chr1 118802332 118802640 -123861713 + AluSg SINE Alu 1 310 0 12520 178 42 30 chr1 118802640 118802876 -123861477 + L1MC1 LINE L1 5033 5265 -1341 3826 134 25 36 chr1 118802876 118803089 -123861264 + L1MB3 LINE L1 5544 5758 -425 1400 214 144 31 chr1 118803089 118803472 -123860881 + MSTB LTR MaLR 1 426 0 3826 134 25 36 chr1 118803472 118803901 -123860452 + L1MB3 LINE L1 5758 6179 -4 12520 178 42 30 chr1 118803901 118804284 -123860069 + L1MC1 LINE L1 5265 5863 -743 800 175 15 7 chr1 118804284 118804421 -123859932 + MSTB1 LTR MaLR 180 317 -115 4738 145 18 4 chr1 118804421 118805150 -123859203 + L1MC1 LINE L1 5874 6612 -1 4483 203 84 22 chr1 118805194 118806402 -123857951 - L1MD2 LINE L1 -237 6122 4991 2546 57 0 0 chr1 118806402 118806699 -123857654 - AluY SINE Alu -14 297 1 4483 203 84 22 chr1 118806699 118807261 -123857092 - L1MD2 LINE L1 -1368 4991 4243 261 0 0 0 chr1 118807261 118807290 -123857063 + (TG)n Simple_repeat Simple_repeat 1 29 0 4483 203 84 22 chr1 118807290 118807387 -123856966 - L1MD2 LINE L1 -2116 4243 4154 525 189 131 49 chr1 118807382 118807629 -123856724 - L1 LINE L1 -2191 3955 3651 * 565 247 94 6 chr1 118808409 118808579 -123855774 - MIR SINE MIR -3 259 75 1925 144 14 0 chr1 118808769 118809061 -123855292 + AluJo SINE Alu 1 296 -16 732 218 89 19 chr1 118809097 118809354 -123854999 - L1ME4a LINE L1 -17 6104 5830 267 339 37 0 chr1 118810323 118810432 -123853921 + MIR3 SINE MIR 13 125 -83 284 347 138 37 chr1 118810555 118810933 -123853420 + L2 LINE L2 2848 3263 -9 525 261 9 0 chr1 118812454 118812565 -123851788 + L2 LINE L2 3142 3253 -19 230 274 134 30 chr1 118813155 118813348 -123851005 - MIR SINE MIR -44 218 9 246 246 70 0 chr1 118814157 118814214 -123850139 + MER91C DNA MER1_type 50 110 -30 308 344 70 4 chr1 118814630 118814855 -123849498 + L2 LINE L2 2788 3037 -235 184 264 23 69 chr1 118814926 118815013 -123849340 + L2 LINE L2 3189 3271 -1 21 0 0 0 chr1 118816008 118816029 -123848324 + AT_rich Low_complexity Low_complexity 1 21 0 2176 66 38 14 chr1 118816646 118816933 -123847420 + AluSg SINE Alu 1 294 -16 215 252 135 45 chr1 118817520 118817631 -123846722 + L2 LINE L2 3132 3252 -20 309 257 119 20 chr1 118820262 118820363 -123843990 + L2 LINE L2 3192 3302 -11 247 271 34 0 chr1 118821341 118821400 -123842953 + MIR SINE MIR 84 144 -118 883 136 0 8 chr1 118822903 118823035 -123841318 - FLAM_C SINE Alu -2 131 1 330 218 205 26 chr1 118823672 118823828 -123840525 + MIR SINE MIR 3 186 -76 448 246 107 8 chr1 118823867 118823989 -123840364 - MER94 DNA DNA 0 134 1 2349 86 0 10 chr1 118825643 118825947 -123838406 + AluSc SINE Alu 1 301 -8 220 196 43 0 chr1 118826938 118826984 -123837369 + L2 LINE L2 3261 3308 -5 1911 111 0 85 chr1 118827772 118828108 -123836245 - AluSq SINE Alu 0 311 2 1987 106 46 11 chr1 118829460 118829744 -123834609 + AluSx SINE Alu 3 296 -16 339 259 47 0 chr1 118829914 118829999 -123834354 - L2 LINE L2 -39 3274 3186 488 205 0 0 chr1 118830096 118830179 -123834174 - Tigger3(Golem) DNA MER2_type 0 3038 2956 1070 151 106 0 chr1 118830181 118830360 -123833993 - Tigger3(Golem) DNA MER2_type -2829 200 3 26 30 0 0 chr1 118831815 118831848 -123832505 + AT_rich Low_complexity Low_complexity 1 33 0 885 165 0 0 chr1 118831858 118831991 -123832362 + FLAM_C SINE Alu 1 133 0 2144 118 3 0 chr1 118832008 118832297 -123832056 - AluSq SINE Alu -23 290 1 2062 142 37 56 chr1 118832351 118832403 -123831950 - L1MA9 LINE L1 0 6312 6261 1308 192 59 28 chr1 118832403 118832689 -123831664 + AluJo SINE Alu 1 295 -17 2062 142 37 56 chr1 118832689 118833046 -123831307 - L1MA9 LINE L1 -51 6261 5911 21 0 0 0 chr1 118833219 118833240 -123831113 + AT_rich Low_complexity Low_complexity 1 21 0 668 135 39 0 chr1 118833267 118833371 -123830982 - AluJb SINE Alu -2 310 203 189 50 50 25 chr1 118834251 118834291 -123830062 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2395 81 3 0 chr1 118834710 118835005 -123829348 - AluSx SINE Alu -16 296 1 2438 265 144 43 chr1 118835051 118836984 -123827369 + L1MC4 LINE L1 5831 8040 -2 651 208 48 16 chr1 118838157 118838282 -123826071 + FLAM_A SINE Alu 2 130 -3 2191 84 44 10 chr1 118841529 118841825 -123822528 - AluSg1 SINE Alu -3 306 1 947 239 11 0 chr1 118844163 118844347 -123820006 + MER5A DNA MER1_type 4 189 0 378 290 59 12 chr1 118846644 118846813 -123817540 + L1ME4a LINE L1 5750 5926 -195 28 38 0 19 chr1 118846920 118846942 -123817411 + AT_rich Low_complexity Low_complexity 1 22 -30 2185 115 0 0 chr1 118846942 118847229 -123817124 + AluSx SINE Alu 1 287 -25 28 38 0 19 chr1 118847229 118847259 -123817094 + AT_rich Low_complexity Low_complexity 22 52 0 2458 96 0 0 chr1 118847836 118848148 -123816205 - AluSx SINE Alu 0 312 1 365 296 118 0 chr1 118848329 118848532 -123815821 - L1ME4a LINE L1 -204 5917 5691 461 277 75 12 chr1 118853719 118853923 -123810430 + MIR SINE MIR 2 221 -41 1902 120 64 0 chr1 118855024 118855315 -123809038 + AluSx SINE Alu 1 308 0 431 239 0 52 chr1 118855378 118855512 -123808841 - MER5B DNA MER1_type -51 127 1 192 77 0 0 chr1 118856423 118856449 -123807904 + (A)n Simple_repeat Simple_repeat 1 26 0 281 205 348 36 chr1 118858029 118858141 -123806212 + MER69A DNA AcHobo 31 177 0 1734 134 58 4 chr1 118858157 118858434 -123805919 - AluJb SINE Alu 0 312 21 864 218 30 5 chr1 118858461 118858658 -123805695 - MLT1A1 LTR MaLR 0 365 164 230 308 51 0 chr1 118858683 118858761 -123805592 - L2 LINE L2 -36 3277 3196 2101 232 296 29 chr1 118859004 118859564 -123804789 + L1MC4 LINE L1 6471 6881 -1161 2293 110 0 7 chr1 118859564 118859874 -123804479 - AluSx SINE Alu -4 308 1 2101 232 296 29 chr1 118859874 118860079 -123804274 + L1MC4 LINE L1 6881 7030 -1012 2935 6 0 0 chr1 118860079 118860390 -123803963 - AluY SINE Alu 0 311 1 2101 232 296 29 chr1 118860390 118860760 -123803593 + L1MC4 LINE L1 7030 7910 -132 1362 181 67 7 chr1 118861055 118861337 -123803016 + AluJo SINE Alu 1 299 -13 1536 184 69 22 chr1 118861531 118861851 -123802502 + MER58B DNA MER1_type 5 339 -2 2292 114 0 9 chr1 118862260 118862575 -123801778 + AluSq SINE Alu 1 312 -1 2208 120 0 3 chr1 118862788 118863088 -123801265 - AluSx SINE Alu -13 299 1 21 36 0 0 chr1 118863130 118863158 -123801195 + AT_rich Low_complexity Low_complexity 1 28 0 2099 83 10 56 chr1 118863223 118863525 -123800828 - AluY SINE Alu -23 288 1 939 92 0 0 chr1 118863548 118863668 -123800685 - AluY SINE Alu -191 120 1 1668 170 24 7 chr1 118863983 118864272 -123800081 - AluJo SINE Alu -18 294 1 1227 124 0 0 chr1 118864941 118865110 -123799243 - AluSg/x SINE Alu -1 311 143 3996 114 2 0 chr1 118865118 118865671 -123798682 - MER41A LTR ERV1 0 554 1 1000 113 0 0 chr1 118865940 118866073 -123798280 - FLAM_C SINE Alu 0 133 1 385 269 39 51 chr1 118866081 118866237 -123798116 - L1ME LINE L1 -351 5770 5617 1040 298 84 20 chr1 118866552 118867284 -123797069 + L2 LINE L2 2296 3113 -200 385 189 49 74 chr1 118867317 118867439 -123796914 + MER31B LTR ERV1 1 119 -347 894 151 9 41 chr1 118867450 118867629 -123796724 - MSTC LTR MaLR -1 427 224 1469 142 139 64 chr1 118867759 118868040 -123796313 - AluJb SINE Alu -10 302 1 287 214 0 0 chr1 118868588 118868644 -123795709 - MIR SINE MIR -118 144 89 331 307 44 29 chr1 118868885 118869022 -123795331 + L2 LINE L2 3175 3313 0 680 189 24 43 chr1 118869392 118869556 -123794797 + FAM SINE Alu 10 170 -15 1538 126 31 12 chr1 118869556 118869810 -123794543 - AluSx SINE Alu -16 296 38 406 343 35 0 chr1 118869869 118870038 -123794315 + MIR3 SINE MIR 33 207 -1 21 36 0 0 chr1 118873407 118873435 -123790918 + AT_rich Low_complexity Low_complexity 1 28 0 2441 97 0 0 chr1 118873623 118873932 -123790421 - AluSx SINE Alu -3 309 1 7861 169 18 9 chr1 118873985 118874758 -123789595 - L1PA13 LINE L1 -3 6160 5395 1951 134 0 10 chr1 118874758 118875049 -123789304 - AluSx SINE Alu -24 288 1 7861 169 18 9 chr1 118875049 118876560 -123787793 - L1PA13 LINE L1 -768 5395 3905 28 48 0 0 chr1 118876771 118876813 -123787540 + AT_rich Low_complexity Low_complexity 1 42 0 545 294 59 43 chr1 118876844 118877418 -123786935 - L1MEd LINE L1 -4657 1653 1028 279 276 40 0 chr1 118877518 118877594 -123786759 - MIR SINE MIR -170 92 14 1372 167 0 75 chr1 118878017 118878310 -123786043 - AluJo SINE Alu -10 302 32 2530 87 0 0 chr1 118878379 118878688 -123785665 + AluSx SINE Alu 1 309 -3 225 274 48 0 chr1 118878737 118878799 -123785554 + MIR SINE MIR 58 122 -86 292 203 68 14 chr1 118878904 118878978 -123785375 - MIR SINE MIR -131 131 54 5920 202 18 19 chr1 118879711 118880052 -123784301 + L1M4 LINE L1 3525 3865 -2281 2197 126 3 0 chr1 118880052 118880354 -123783999 + AluSx SINE Alu 1 303 -9 279 0 0 0 chr1 118880354 118880385 -123783968 + (TA)n Simple_repeat Simple_repeat 2 32 0 5920 202 18 19 chr1 118880385 118881375 -123782978 + L1M4 LINE L1 3863 4855 -1291 973 162 7 132 chr1 118881430 118881507 -123782846 + L1M4 LINE L1 4846 4931 -1215 889 107 15 0 chr1 118881507 118881638 -123782715 - L1MA2 LINE L1 0 6304 6172 973 162 7 132 chr1 118881638 118881832 -123782521 + L1M4 LINE L1 4931 5083 -1063 1983 144 18 3 chr1 118881936 118882270 -123782083 - L1MB3 LINE L1 -38 6145 5807 567 235 31 6 chr1 118882270 118882432 -123781921 - L1M4 LINE L1 -3547 2599 2434 2283 69 7 10 chr1 118882463 118882752 -123781601 - AluSg SINE Alu -22 288 1 780 171 0 8 chr1 118882866 118882989 -123781364 + FLAM_A SINE Alu 1 122 -11 234 326 11 11 chr1 118883007 118883102 -123781251 - MIR SINE MIR -92 116 22 653 247 24 18 chr1 118884149 118884319 -123780034 + L1MC/D LINE L1 5582 5752 -2056 2510 253 82 33 chr1 118884322 118885657 -123778696 - L2 LINE L2 0 3313 1927 1248 123 0 17 chr1 118885776 118886962 -123777391 + (TGG)n Simple_repeat Simple_repeat 1 1165 0 431 173 10 77 chr1 118887102 118887206 -123777147 - MSTD LTR MaLR -299 97 1 1421 187 33 17 chr1 118887217 118887516 -123776837 + MER31A LTR ERV1 182 485 0 291 244 214 23 chr1 118887536 118887667 -123776686 + L2 LINE L2 3117 3272 0 21 36 0 0 chr1 118888160 118888188 -123776165 + GC_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 118888279 118888311 -123776042 + GC_rich Low_complexity Low_complexity 1 32 0 2293 84 0 17 chr1 118890000 118890299 -123774054 + AluSq SINE Alu 1 294 -19 1904 123 0 38 chr1 118890647 118890964 -123773389 - AluSx SINE Alu 0 306 1 334 309 55 75 chr1 118891362 118891563 -123772790 - L2 LINE L2 0 3313 3117 402 21 0 0 chr1 118891901 118891948 -123772405 + (TA)n Simple_repeat Simple_repeat 2 48 0 457 194 145 24 chr1 118893820 118893944 -123770409 - MIR SINE MIR -15 247 109 2255 120 0 0 chr1 118894003 118894311 -123770042 - AluSx SINE Alu -4 308 1 213 236 14 83 chr1 118895240 118895312 -123769041 - L2 LINE L2 0 3272 3206 956 151 0 13 chr1 118899172 118899331 -123765022 + FRAM SINE Alu 13 169 -7 2128 133 0 0 chr1 118900047 118900349 -123764004 + AluSx SINE Alu 1 302 -10 2283 52 11 0 chr1 118900601 118900887 -123763466 + AluY SINE Alu 3 291 -20 206 221 176 0 chr1 118900927 118900995 -123763358 - L2 LINE L2 -42 3230 3151 647 265 66 14 chr1 118901020 118901231 -123763122 + MIR SINE MIR 4 225 -37 256 239 169 77 chr1 118901887 118902017 -123762336 + MIR3 SINE MIR 46 187 -21 230 326 98 0 chr1 118903467 118903559 -123760794 - L2 LINE L2 -18 3254 3154 191 302 60 43 chr1 118904002 118904118 -123760235 - MIR SINE MIR -111 151 34 637 205 9 0 chr1 118905304 118905416 -123758937 - MER81 DNA DNA 0 114 2 227 357 32 60 chr1 118906011 118906096 -123758257 + L2 LINE L2 2604 2690 -624 1590 159 29 42 chr1 118906096 118906307 -123758046 - AluJb SINE Alu -8 304 97 1904 147 14 0 chr1 118906307 118906600 -123757753 - AluSx SINE Alu -15 297 1 1590 159 29 42 chr1 118906600 118906696 -123757657 - AluJb SINE Alu -215 97 1 227 357 32 60 chr1 118906696 118906795 -123757558 + L2 LINE L2 2690 2783 -531 266 362 40 7 chr1 118909606 118909758 -123754595 - MIR3 SINE MIR -7 201 45 753 295 44 0 chr1 118910064 118910291 -123754062 - MIR SINE MIR -6 256 20 407 247 84 37 chr1 118910742 118910932 -123753421 + MIR SINE MIR 5 203 -59 224 319 85 14 chr1 118911172 118911313 -123753040 - L2 LINE L2 -25 3247 3097 240 309 52 21 chr1 118912487 118912584 -123751769 + L2 LINE L2 3168 3267 -5 184 300 127 0 chr1 118915749 118915859 -123748494 + L2 LINE L2 2632 2755 -559 378 0 0 0 chr1 118916434 118916476 -123747877 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 330 65 28 chr1 118917986 118918201 -123746152 - MIR SINE MIR -21 241 19 26 0 0 0 chr1 118924300 118924326 -123740027 + GC_rich Low_complexity Low_complexity 1 26 0 52 50 0 0 chr1 118924528 118924608 -123739745 + GC_rich Low_complexity Low_complexity 1 80 0 212 179 0 0 chr1 118926392 118926431 -123737922 + MIR SINE MIR 106 144 -118 1091 164 0 5 chr1 118927080 118927269 -123737084 - AluSg/x SINE Alu -7 303 116 338 307 104 0 chr1 118927273 118927427 -123736926 - MIR SINE MIR -62 146 6 281 310 124 0 chr1 118927939 118928052 -123736301 - L2 LINE L2 0 3313 3187 243 103 0 0 chr1 118928571 118928610 -123735743 + (GA)n Simple_repeat Simple_repeat 2 40 0 266 267 76 8 chr1 118928735 118928866 -123735487 + MIR SINE MIR 65 204 -58 2096 104 17 0 chr1 118929094 118929383 -123734970 - AluSx SINE Alu -13 299 6 304 346 46 78 chr1 118929489 118929859 -123734494 - L2 LINE L2 0 3272 2915 459 263 134 54 chr1 118930704 118930836 -123733517 - MIR SINE MIR 0 262 142 2246 208 67 31 chr1 118930836 118931356 -123732997 - MLT1F LTR MaLR -1 541 3 459 263 134 54 chr1 118931356 118931447 -123732906 - MIR SINE MIR -120 142 21 411 305 84 11 chr1 118931863 118932053 -123732300 - MIR SINE MIR -15 247 44 184 220 85 34 chr1 118932791 118932850 -123731503 + MIR SINE MIR 201 262 0 734 147 115 0 chr1 118932936 118933092 -123731261 - MIR SINE MIR -1 261 88 797 73 0 68 chr1 118933879 118934071 -123730282 + (CATTC)n Simple_repeat Simple_repeat 2 180 0 1955 115 7 0 chr1 118934073 118934352 -123730001 - AluSx SINE Alu -31 281 1 201 250 0 0 chr1 118934901 118934961 -123729392 + (TG)n Simple_repeat Simple_repeat 2 61 0 398 196 54 84 chr1 118935363 118935415 -123728938 - MIR3 SINE MIR -5 203 151 1008 172 0 66 chr1 118935415 118935486 -123728867 + MER5A DNA MER1_type 5 79 -110 2107 117 0 3 chr1 118935486 118935785 -123728568 + AluSx SINE Alu 1 298 -14 1008 172 0 66 chr1 118935785 118935911 -123728442 + MER5A DNA MER1_type 79 189 0 398 196 54 84 chr1 118935911 118936002 -123728351 - MIR3 SINE MIR -57 151 63 211 307 13 33 chr1 118939482 118939635 -123724718 + GA-rich Low_complexity Low_complexity 1 150 0 219 316 0 31 chr1 118940684 118940782 -123723571 - L2 LINE L2 -202 3070 2976 471 236 18 9 chr1 118943083 118943193 -123721160 + L2 LINE L2 3160 3270 -2 294 280 54 11 chr1 118943300 118943393 -123720960 - MER81 DNA DNA -16 98 2 276 253 0 0 chr1 118944679 118944754 -123719599 + (TA)n Simple_repeat Simple_repeat 2 76 0 1708 133 8 4 chr1 118944754 118945018 -123719335 - AluJb SINE Alu -27 285 21 729 210 189 31 chr1 118945054 118945147 -123719206 + MER113 DNA MER1_type? 3 80 -441 183 42 0 0 chr1 118945147 118945171 -123719182 + (CA)n Simple_repeat Simple_repeat 1 24 0 729 210 189 31 chr1 118945171 118945368 -123718985 + MER113 DNA MER1_type? 80 339 -182 1694 251 96 22 chr1 118945900 118946595 -123717758 + L2 LINE L2 2261 3005 -308 1017 265 4 4 chr1 118946616 118946861 -123717492 - MIR SINE MIR 0 262 18 468 323 55 10 chr1 118946885 118947086 -123717267 - L1ME3 LINE L1 -1 6161 5952 1423 197 31 10 chr1 118947220 118947509 -123716844 + AluJb SINE Alu 1 295 -17 213 274 0 0 chr1 118948168 118948241 -123716112 + (CA)n Simple_repeat Simple_repeat 1 73 0 195 42 0 0 chr1 118949356 118949380 -123714973 + (TCCCC)n Simple_repeat Simple_repeat 1 24 0 201 346 0 0 chr1 118949680 118949732 -123714621 - L2 LINE L2 -85 3187 3136 350 323 31 43 chr1 118950400 118950561 -123713792 - MIR3 SINE MIR -14 194 36 544 151 58 0 chr1 118950729 118950815 -123713538 + AluJb SINE Alu 190 280 -32 1658 107 0 0 chr1 118950815 118951049 -123713304 + AluSg/x SINE Alu 77 310 0 271 217 48 24 chr1 118951473 118951556 -123712797 + MIR SINE MIR 46 130 -78 267 306 49 49 chr1 118951657 118951801 -123712552 - MIR3 SINE MIR -43 165 22 724 268 34 19 chr1 118952993 118953202 -123711151 + MIR SINE MIR 24 235 -27 207 323 5 15 chr1 118953343 118953488 -123710865 + GA-rich Low_complexity Low_complexity 1 143 0 269 100 20 0 chr1 118953493 118953543 -123710810 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 797 169 0 29 chr1 118954976 118955112 -123709241 + FLAM_C SINE Alu 2 133 0 292 328 69 8 chr1 118955489 118955620 -123708733 - MIR SINE MIR -40 222 84 195 294 118 0 chr1 118956421 118956506 -123707847 + MIR3 SINE MIR 106 200 -8 250 208 0 19 chr1 118958958 118959011 -123705342 + AluJ/FLAM SINE Alu 10 61 -241 1209 152 15 0 chr1 118959019 118959216 -123705137 - AluJo SINE Alu -112 200 1 189 195 0 0 chr1 118959556 118959597 -123704756 + (TG)n Simple_repeat Simple_repeat 2 42 0 248 291 35 23 chr1 118960582 118960668 -123703685 - L2 LINE L2 -17 3255 3169 193 310 50 50 chr1 118961715 118961815 -123702538 - MIR SINE MIR -74 188 89 253 363 89 21 chr1 118963116 118963353 -123701000 - L2 LINE L2 -5 3267 3015 705 198 0 0 chr1 118963354 118963533 -123700820 - FLAM_A SINE Alu 0 194 16 231 307 130 43 chr1 118963669 118963969 -123700384 - L2 LINE L2 -528 2786 2461 2342 91 0 0 chr1 118964109 118964418 -123699935 - AluSg SINE Alu -1 309 1 286 250 56 0 chr1 118965031 118965103 -123699250 + MIR SINE MIR 117 192 -70 1015 263 188 19 chr1 118965116 118965296 -123699057 + LTR16C LTR ERVL 5 153 -338 1997 150 3 0 chr1 118965296 118965603 -123698750 + AluSx SINE Alu 1 308 -4 1015 263 188 19 chr1 118965603 118965837 -123698516 + LTR16C LTR ERVL 153 489 -2 293 310 78 0 chr1 118965890 118966006 -123698347 + L2 LINE L2 3189 3313 0 297 246 17 68 chr1 118968142 118968260 -123696093 + MIR SINE MIR 77 188 -74 188 197 118 79 chr1 118969693 118969720 -123694633 - L2 LINE L2 -5 3267 3243 1891 191 28 17 chr1 118969720 118969926 -123694427 - MLT1A1 LTR MaLR 0 365 152 2063 116 7 0 chr1 118969926 118970219 -123694134 - AluJb SINE Alu -17 295 1 1891 191 28 17 chr1 118970219 118970373 -123693980 - MLT1A1 LTR MaLR -213 152 1 188 197 118 79 chr1 118970373 118970421 -123693932 - L2 LINE L2 -29 3243 3189 1745 142 13 35 chr1 118971005 118971322 -123693031 - AluJo SINE Alu 0 312 3 406 267 70 58 chr1 118971632 118971804 -123692549 + MIR3 SINE MIR 32 205 -3 2023 253 83 14 chr1 118972157 118972189 -123692164 - MLT1E LTR MaLR -1 592 564 1277 181 33 49 chr1 118972189 118972432 -123691921 + MER8 DNA MER2_type 1 239 0 2023 253 83 14 chr1 118972432 118972953 -123691400 - MLT1E LTR MaLR -29 564 1 1431 71 0 0 chr1 118974315 118974795 -123689558 + (CCA)n Simple_repeat Simple_repeat 1 480 0 1227 94 0 0 chr1 118974801 118974934 -123689419 + (CCA)n Simple_repeat Simple_repeat 1 313 0 1227 94 0 0 chr1 118974934 118975114 -123689239 + (CCA)n Simple_repeat Simple_repeat 1 180 0 403 317 39 7 chr1 118976624 118976826 -123687527 + MIR SINE MIR 3 212 -50 198 103 0 0 chr1 118977339 118977368 -123686985 + (GA)n Simple_repeat Simple_repeat 2 30 0 788 264 95 22 chr1 118977369 118977778 -123686575 + L1MC5 LINE L1 7474 7912 -49 565 251 65 40 chr1 118978025 118978224 -123686129 - LTR67 LTR ERVL -1 556 353 519 273 58 6 chr1 118978642 118978820 -123685533 - MIR SINE MIR -50 212 22 193 287 181 21 chr1 118978959 118979053 -123685300 + MIR SINE MIR 1 109 -153 234 158 0 0 chr1 118979072 118979110 -123685243 + MSTB1 LTR MaLR 1 38 -394 2345 139 41 15 chr1 118979110 118979521 -123684832 + MSTB1 LTR MaLR 11 432 0 251 288 68 51 chr1 118979554 118979672 -123684681 + MIR SINE MIR 143 262 0 242 224 45 30 chr1 118980451 118980518 -123683835 + MIR SINE MIR 37 104 -104 580 262 14 7 chr1 118980650 118980795 -123683558 + MLT2F LTR ERVL 1 146 -517 949 177 28 11 chr1 118980799 118980980 -123683373 + MLT1E3 LTR MaLR 51 234 -390 861 248 150 13 chr1 118980818 118981125 -123683228 + MLT2C1 LTR ERVL 49 397 0 * 300 326 63 0 chr1 118981358 118981453 -123682900 - MIR SINE MIR -96 166 66 867 238 185 14 chr1 118982296 118982582 -123681771 + ERVL LTR ERVL 5246 5580 -184 457 292 122 32 chr1 118982600 118983106 -123681247 - L2 LINE L2 -74 3239 2702 2166 111 10 0 chr1 118983771 118984077 -123680276 - AluSx SINE Alu -3 309 1 211 266 78 0 chr1 118985298 118985362 -123678991 - MIR SINE MIR -70 192 124 295 278 56 0 chr1 118985569 118985659 -123678694 + MIR SINE MIR 39 133 -75 2158 112 0 10 chr1 118986200 118986514 -123677839 + AluSx SINE Alu 1 311 -1 989 202 70 9 chr1 118986688 118986901 -123677452 + MIR SINE MIR 3 228 -34 279 289 11 22 chr1 118986969 118987059 -123677294 + L2 LINE L2 2603 2691 -623 277 146 0 0 chr1 118987118 118987166 -123677187 - MER53 DNA DNA -138 51 4 360 246 24 32 chr1 118987351 118987477 -123676876 - MIR3 SINE MIR -11 197 73 447 262 16 25 chr1 118988410 118988532 -123675821 + MIR SINE MIR 23 143 -65 474 301 140 11 chr1 118988613 118988799 -123675554 + MIR SINE MIR 6 215 -47 344 299 34 41 chr1 118988915 118989062 -123675291 - MIR SINE MIR -45 163 18 319 331 8 16 chr1 118989135 118989256 -123675097 + MIR3 SINE MIR 4 123 -85 446 266 96 27 chr1 118989641 118989829 -123674524 - MIR SINE MIR -41 221 21 196 323 72 77 chr1 118990666 118990861 -123673492 + L2 LINE L2 3027 3220 -52 568 269 13 6 chr1 118991242 118991398 -123672955 + MIR3 SINE MIR 52 208 0 327 241 43 52 chr1 118992262 118992378 -123671975 - MIR SINE MIR -37 225 111 984 272 77 53 chr1 118992812 118993537 -123670816 - L1MC4a LINE L1 -139 6023 5297 455 250 227 0 chr1 118993569 118993745 -123670608 - L2 LINE L2 -3 3310 3095 1742 108 129 3 chr1 118993884 118994171 -123670182 - L1MA5A LINE L1 -6 6291 5969 546 249 91 5 chr1 118994172 118994393 -123669960 - L1MC4a LINE L1 -2935 3211 2972 347 338 97 26 chr1 118994393 118994621 -123669732 - L1M4 LINE L1 -1115 5031 4788 370 115 0 0 chr1 118994628 118994715 -123669638 - AluS SINE Alu 0 318 232 239 349 27 46 chr1 118994720 118995244 -123669109 - L1M4 LINE L1 -1373 4773 4260 2125 111 13 0 chr1 118995247 118995553 -123668800 - AluSx SINE Alu -2 310 1 285 213 16 0 chr1 118995633 118995694 -123668659 + MIR SINE MIR 170 231 -31 246 250 0 60 chr1 118995738 118995838 -123668515 - MIR SINE MIR -55 207 114 1714 158 14 7 chr1 118995889 118996173 -123668180 + AluJb SINE Alu 12 297 -15 190 312 32 43 chr1 118996939 118997032 -123667321 + L2 LINE L2 2719 2810 -504 314 301 15 29 chr1 118997232 118997368 -123666985 - L3 LINE CR1 -553 1024 891 500 255 116 14 chr1 118998110 118998326 -123666027 - MIR SINE MIR -11 251 14 1386 277 90 24 chr1 118999022 118999513 -123664840 - MLT1G1 LTR MaLR 0 595 73 285 273 47 55 chr1 118999947 119000075 -123664278 - L2 LINE L2 -20 3293 3167 289 333 10 0 chr1 119000142 119000238 -123664115 + MIR SINE MIR 77 173 -89 818 331 188 33 chr1 119001173 119002790 -123661563 - L2 LINE L2 -375 2939 1072 272 314 0 25 chr1 119002804 119002925 -123661428 + L2 LINE L2 2309 2426 -888 505 249 70 70 chr1 119002940 119002997 -123661356 - MIR SINE MIR -2 260 204 638 147 121 0 chr1 119002997 119003113 -123661240 - FLAM_C SINE Alu -3 130 1 505 249 70 70 chr1 119003113 119003296 -123661057 - MIR SINE MIR -57 205 20 496 273 16 8 chr1 119003463 119003591 -123660762 + L2 LINE L2 3181 3309 -4 1653 221 117 15 chr1 119003596 119004067 -123660286 + LTR40a LTR ERVL 1 519 0 184 217 50 50 chr1 119004540 119004600 -123659753 + L2 LINE L2 3235 3294 -19 355 246 49 22 chr1 119007221 119007355 -123656998 + MIR SINE MIR 45 181 -62 270 0 0 0 chr1 119008078 119008108 -123656245 + (TG)n Simple_repeat Simple_repeat 1 30 0 654 238 104 25 chr1 119008670 119008910 -123655443 - MIR SINE MIR -1 261 3 212 260 252 0 chr1 119011229 119011352 -123653001 + MIR SINE MIR 52 205 -57 182 274 41 41 chr1 119011560 119011633 -123652720 + L2 LINE L2 2648 2720 -594 1057 274 77 47 chr1 119011870 119011971 -123652382 + L2 LINE L2 2572 2669 -644 2386 103 0 0 chr1 119011971 119012281 -123652072 + AluSg SINE Alu 1 310 0 1057 274 77 47 chr1 119012281 119012886 -123651467 + L2 LINE L2 2669 3308 -5 451 280 54 18 chr1 119013240 119013408 -123650945 - MIR SINE MIR -64 198 25 341 284 10 10 chr1 119013480 119013582 -123650771 + HsTC2 DNA Tc2 1 102 -1796 278 233 0 0 chr1 119013599 119013659 -123650694 + HsTC2 DNA Tc2 1231 1290 -608 460 331 6 0 chr1 119013682 119013842 -123650511 + MIR SINE MIR 98 258 -4 450 344 7 0 chr1 119014461 119014612 -123649741 + MIR SINE MIR 107 258 -4 354 333 35 0 chr1 119017826 119017940 -123646413 - MIR3 SINE MIR -18 190 73 566 284 83 5 chr1 119018240 119018444 -123645909 - MIR SINE MIR -12 250 31 216 0 0 0 chr1 119018467 119018491 -123645862 + (A)n Simple_repeat Simple_repeat 1 24 0 468 314 0 43 chr1 119018905 119019093 -123645260 - MIR SINE MIR -18 244 65 869 280 91 59 chr1 119019094 119019641 -123644712 + L2 LINE L2 2742 3313 0 397 293 35 0 chr1 119019800 119019916 -123644437 + MIR3 SINE MIR 82 201 -7 202 206 79 0 chr1 119021774 119021837 -123642516 - MER5A DNA MER1_type -77 112 45 834 262 89 4 chr1 119022850 119023075 -123641278 + MIR SINE MIR 19 262 0 228 278 0 0 chr1 119023073 119023127 -123641226 - MIR SINE MIR -15 247 194 * 567 295 24 48 chr1 119023184 119023394 -123640959 - MIR SINE MIR -56 206 2 209 230 0 81 chr1 119024720 119024794 -123639559 - MIR SINE MIR -38 224 157 404 159 0 0 chr1 119024795 119024864 -123639489 - MER116 DNA Mariner 0 80 12 455 241 105 8 chr1 119024864 119024997 -123639356 - MIR SINE MIR -105 157 12 2616 47 0 0 chr1 119025647 119025945 -123638408 + AluY SINE Alu 1 298 -13 213 121 0 0 chr1 119026291 119026324 -123638029 + (TG)n Simple_repeat Simple_repeat 1 33 0 185 303 74 41 chr1 119026346 119026468 -123637885 + L2 LINE L2 3136 3261 -11 248 326 62 28 chr1 119029631 119029775 -123634578 + MIR SINE MIR 76 224 -38 * 389 240 73 60 chr1 119029760 119029910 -123634443 - MIR3 SINE MIR -27 181 30 598 259 28 13 chr1 119030979 119031155 -123633198 - MIR3 SINE MIR -11 197 20 782 263 32 9 chr1 119031259 119031476 -123632877 - MIR SINE MIR -39 223 2 366 296 80 36 chr1 119032274 119032577 -123631776 - L2 LINE L2 -24 3248 2855 189 0 0 0 chr1 119032578 119032599 -123631754 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 1837 169 34 8 chr1 119033991 119034347 -123630006 - MLT1A1 LTR MaLR 0 365 1 1162 284 50 18 chr1 119034437 119034873 -123629480 - L1ME3A LINE L1 -223 5947 5498 362 73 0 18 chr1 119034954 119035009 -123629344 + (TCCCC)n Simple_repeat Simple_repeat 2 55 0 2348 89 3 0 chr1 119035009 119035301 -123629052 - AluSp SINE Alu -20 293 1 753 175 0 8 chr1 119035415 119035541 -123628812 + FLAM_A SINE Alu 1 125 -8 250 326 11 11 chr1 119035556 119035651 -123628702 - MIR SINE MIR -92 116 22 1260 155 11 32 chr1 119036206 119036483 -123627870 + L1MB8 LINE L1 5857 6127 -51 773 271 120 6 chr1 119036525 119036875 -123627478 - L2 LINE L2 -1729 1585 1196 285 280 0 0 chr1 119036886 119036961 -123627392 + HsTC2 DNA Tc2 5 79 -1819 2254 90 23 7 chr1 119036980 119037281 -123627072 - AluSc SINE Alu -3 306 1 670 234 0 7 chr1 119037306 119037451 -123626902 - MIR SINE MIR -21 241 98 215 125 25 0 chr1 119037654 119037694 -123626659 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 507 303 164 0 chr1 119037967 119038175 -123626178 + MIR SINE MIR 21 262 0 254 141 0 109 chr1 119038900 119038964 -123625389 + L1MC5 LINE L1 7847 7903 -58 236 284 0 0 chr1 119039302 119039369 -123624984 + A-rich Low_complexity Low_complexity 1 67 0 215 146 0 24 chr1 119039545 119039586 -123624767 + (TC)n Simple_repeat Simple_repeat 1 40 0 253 385 7 0 chr1 119039722 119039857 -123624496 - L2 LINE L2 -214 3058 2923 2313 130 19 0 chr1 119040022 119040456 -123623897 - MER57A LTR ERV1 -5 429 1 1419 181 26 57 chr1 119040803 119041152 -123623201 + MER46C DNA MER2_type 1 338 0 494 316 182 44 chr1 119041220 119042987 -123621366 + L2 LINE L2 1241 3269 -3 306 274 19 38 chr1 119043735 119043841 -123620512 + MIR SINE MIR 41 144 -64 324 281 114 52 chr1 119043918 119044128 -123620225 - MIR SINE MIR -17 245 23 406 270 40 0 chr1 119044426 119044526 -123619827 - MER91C DNA MER1_type -11 129 26 420 269 54 15 chr1 119044601 119044731 -123619622 - MIR SINE MIR -49 213 79 194 273 15 30 chr1 119045883 119045949 -123618404 + MIR SINE MIR 198 262 0 474 272 61 50 chr1 119045963 119046143 -123618210 - MIR SINE MIR -67 195 14 539 205 38 76 chr1 119046877 119047062 -123617291 + MER5B DNA MER1_type 1 178 0 238 227 61 30 chr1 119047245 119047311 -123617042 + MER5A DNA MER1_type 122 189 0 257 274 57 40 chr1 119048165 119048289 -123616064 - L2 LINE L2 -2 3270 3145 291 318 196 0 chr1 119048697 119048845 -123615508 - MIR3 SINE MIR -2 206 30 1328 217 79 32 chr1 119049440 119049910 -123614443 - Charlie4a DNA MER1_type -16 492 1 360 329 74 0 chr1 119050555 119050704 -123613649 - MIR SINE MIR -11 251 92 718 124 29 0 chr1 119052720 119052857 -123611496 + (TGGA)n Simple_repeat Simple_repeat 3 143 0 183 156 0 0 chr1 119052863 119052895 -123611458 + GA-rich Low_complexity Low_complexity 1 32 0 181 179 18 18 chr1 119053655 119053711 -123610642 + (TG)n Simple_repeat Simple_repeat 2 57 0 216 290 130 10 chr1 119056124 119056224 -123608129 - L2 LINE L2 -1 3271 3160 396 319 19 57 chr1 119056404 119056561 -123607792 + MIR SINE MIR 2 152 -110 1583 233 84 36 chr1 119056586 119057084 -123607269 - MLT1H1 LTR MaLR 0 555 34 395 345 36 0 chr1 119057361 119057500 -123606853 + MIR SINE MIR 51 194 -68 1268 302 26 33 chr1 119057911 119058454 -123605899 + MLT1H1 LTR MaLR 17 555 0 486 327 39 7 chr1 119058455 119058608 -123605745 - MIR3 SINE MIR -34 174 17 249 330 61 26 chr1 119058666 119058781 -123605572 - L2 LINE L2 -1 3271 3153 377 297 0 0 chr1 119061344 119061435 -123602918 + L2 LINE L2 3223 3313 0 27 49 0 0 chr1 119063109 119063150 -123601203 + GC_rich Low_complexity Low_complexity 1 41 0 220 240 53 0 chr1 119063679 119063754 -123600599 + (CCCCG)n Simple_repeat Simple_repeat 3 81 0 238 240 0 0 chr1 119064607 119064657 -123599696 + (CGG)n Simple_repeat Simple_repeat 1 50 0 243 0 0 0 chr1 119066051 119066078 -123598275 + (A)n Simple_repeat Simple_repeat 1 27 0 228 405 61 0 chr1 119067092 119067223 -123597130 - MIR3 SINE MIR -52 156 18 512 276 124 18 chr1 119067362 119067579 -123596774 - MIR SINE MIR -3 259 20 381 274 141 23 chr1 119068556 119068765 -123595588 - MIR SINE MIR -14 248 19 304 284 23 0 chr1 119071092 119071180 -123593173 - MIR SINE MIR -31 231 142 * 1004 274 112 13 chr1 119071178 119071554 -123592799 + L2 LINE L2 2900 3312 -1 361 318 40 8 chr1 119071521 119071647 -123592706 - MIR SINE MIR -99 163 34 * 342 214 34 86 chr1 119071979 119072096 -123592257 + MIR3 SINE MIR 96 206 -2 537 253 158 20 chr1 119072172 119072374 -123591979 - MIR SINE MIR -14 248 19 199 264 0 19 chr1 119072954 119073007 -123591346 + MIR3 SINE MIR 5 56 -152 264 223 93 101 chr1 119073008 119073147 -123591206 + MIR SINE MIR 83 220 -42 189 0 0 0 chr1 119073349 119073370 -123590983 + (TCCC)n Simple_repeat Simple_repeat 3 23 0 651 332 40 16 chr1 119074089 119074339 -123590014 + MIR SINE MIR 1 256 -6 180 167 0 0 chr1 119074340 119074376 -123589977 + L2 LINE L2 2360 2395 -919 659 257 62 6 chr1 119075205 119075384 -123588969 - MER5A DNA MER1_type 0 189 1 306 233 105 0 chr1 119075404 119075490 -123588863 + MER5A DNA MER1_type 13 107 -82 392 286 121 11 chr1 119077008 119077208 -123587145 + MIR SINE MIR 3 220 -42 218 374 146 10 chr1 119077421 119077715 -123586638 + L3b LINE CR1 1120 1453 -130 189 0 0 0 chr1 119082029 119082050 -123582303 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 326 244 158 32 chr1 119087033 119087174 -123577179 - MIR3 SINE MIR -41 167 23 681 166 129 0 chr1 119087503 119087642 -123576711 + MER45A DNA AcHobo 1 157 -21 252 318 127 0 chr1 119087725 119087835 -123576518 + MIR SINE MIR 46 169 -93 683 286 16 52 chr1 119088659 119088907 -123575446 + MIR SINE MIR 3 241 -21 523 306 49 16 chr1 119089091 119089274 -123575079 - MIR SINE MIR -72 190 2 228 218 205 13 chr1 119089333 119089411 -123574942 - MIR SINE MIR -66 196 104 362 327 148 10 chr1 119089613 119089815 -123574538 + L3 LINE CR1 1160 1389 -188 1703 141 46 32 chr1 119089907 119090191 -123574162 + AluJo SINE Alu 2 289 -23 439 286 104 42 chr1 119090333 119090525 -123573828 + L3 LINE CR1 1370 1573 -4 225 245 0 0 chr1 119090533 119090582 -123573771 - MIR SINE MIR -120 88 40 359 295 94 58 chr1 119091223 119091378 -123572975 + L2 LINE L2 2106 2273 -1041 192 77 0 0 chr1 119091378 119091404 -123572949 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 359 295 94 58 chr1 119091404 119091472 -123572881 + L2 LINE L2 2273 2337 -977 226 257 43 0 chr1 119091421 119091491 -123572862 - L2 LINE L2 -35 3278 3206 * 427 287 98 7 chr1 119091676 119091819 -123572534 - L2 LINE L2 -5 3308 3153 508 299 52 50 chr1 119091822 119092223 -123572130 + L2 LINE L2 2575 2976 -338 211 286 36 48 chr1 119092786 119092870 -123571483 + L2 LINE L2 3189 3271 -1 298 287 26 26 chr1 119092902 119093017 -123571336 + GA-rich Low_complexity Low_complexity 6 120 0 183 100 0 0 chr1 119093619 119093649 -123570704 + (CCA)n Simple_repeat Simple_repeat 1 30 0 345 227 45 11 chr1 119094574 119094662 -123569691 + L2 LINE L2 2979 3069 -203 402 244 205 19 chr1 119095565 119095721 -123568632 - MIR SINE MIR -1 261 77 441 298 101 20 chr1 119095814 119096012 -123568341 + MIR SINE MIR 38 251 -11 403 284 8 8 chr1 119096488 119096615 -123567738 + GA-rich Low_complexity Low_complexity 2 128 0 1043 149 24 6 chr1 119097100 119097268 -123567085 + FAM SINE Alu 3 173 -2 439 356 28 19 chr1 119097663 119097878 -123566475 + MIR SINE MIR 24 245 -17 185 0 0 39 chr1 119098606 119098632 -123565721 + (TTCTC)n Simple_repeat Simple_repeat 4 28 0 260 347 101 25 chr1 119099307 119099584 -123564769 + L2 LINE L2 2679 2976 -338 2288 173 45 26 chr1 119099648 119100112 -123564241 - L1PB4 LINE L1 0 6156 5681 1496 176 65 0 chr1 119100112 119100390 -123563963 - AluJb SINE Alu -16 296 1 2288 173 45 26 chr1 119100390 119100416 -123563937 - L1PB4 LINE L1 -475 5681 5657 2236 98 13 0 chr1 119100425 119100731 -123563622 - AluSg SINE Alu 0 310 1 306 116 0 0 chr1 119101041 119101084 -123563269 + Charlie5 DNA MER1_type 25 67 -2545 673 154 84 0 chr1 119101086 119101229 -123563124 + Charlie5 DNA MER1_type 2470 2624 0 241 140 35 53 chr1 119101249 119101306 -123563047 + LTR37B LTR ERV1 134 189 -279 255 31 0 0 chr1 119101311 119101343 -123563010 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 986 173 108 16 chr1 119101363 119101612 -123562741 + LTR37B LTR ERV1 197 468 0 278 200 0 67 chr1 119102290 119102350 -123562003 + L2 LINE L2 3201 3256 -16 1354 130 89 4 chr1 119102616 119102863 -123561490 - L1MB3 LINE L1 -7 6176 5909 2702 105 3 0 chr1 119104105 119104468 -123559885 + THE1B LTR MaLR 1 364 0 387 281 54 54 chr1 119104591 119104794 -123559559 - MIR SINE MIR -45 217 15 579 262 151 15 chr1 119105525 119105731 -123558622 - MIR SINE MIR -1 261 28 243 267 17 117 chr1 119105714 119105834 -123558519 - MIR SINE MIR -76 186 79 * 251 198 12 86 chr1 119106461 119106542 -123557811 - MIR3 SINE MIR -125 83 9 222 62 0 0 chr1 119107775 119107807 -123556546 + (CATTC)n Simple_repeat Simple_repeat 5 36 0 484 275 0 33 chr1 119107966 119108086 -123556267 + L2 LINE L2 3157 3272 0 181 231 0 0 chr1 119109062 119109101 -123555252 - L2 LINE L2 -2 3270 3232 208 266 106 21 chr1 119109111 119109205 -123555148 - MIR SINE MIR -128 134 33 278 312 130 13 chr1 119109209 119109363 -123554990 - MIR3 SINE MIR -6 202 31 2451 52 0 19 chr1 119110314 119110623 -123553730 + AluY SINE Alu 1 303 -8 693 312 80 45 chr1 119110623 119111024 -123553329 - MLT1J LTR MaLR -96 415 1 2245 99 0 0 chr1 119111112 119111416 -123552937 - AluSc SINE Alu -5 304 1 305 279 0 13 chr1 119111417 119111496 -123552857 + L1ME4a LINE L1 6043 6120 -1 508 301 107 44 chr1 119112271 119112746 -123551607 + MLT1J LTR MaLR 6 510 -1 2968 236 68 19 chr1 119113335 119113565 -123550788 + Charlie7 DNA MER1_type 371 588 -2024 2033 81 0 0 chr1 119113565 119113838 -123550515 + AluY SINE Alu 37 309 -2 2968 236 68 19 chr1 119113838 119114795 -123549558 + Charlie7 DNA MER1_type 588 1646 -966 619 229 71 24 chr1 119114835 119115045 -123549308 + Charlie7 DNA MER1_type 1801 2020 -592 303 188 225 0 chr1 119115171 119115260 -123549093 - AluS SINE Alu -219 84 1 184 366 12 12 chr1 119115451 119115533 -123548820 - L3 LINE CR1 -234 1343 1262 4316 145 73 11 chr1 119116917 119117646 -123546707 - LTR39 LTR ERV1 -8 775 2 2112 116 3 3 chr1 119117680 119117981 -123546372 + AluSx SINE Alu 1 301 -11 659 12 0 12 chr1 119118223 119118304 -123546049 + (TAAAA)n Simple_repeat Simple_repeat 3 82 0 887 240 97 0 chr1 119119348 119119565 -123544788 - MIR SINE MIR -10 252 15 856 195 84 188 chr1 119120585 119121206 -123543147 + LTR8A LTR ERV1 1 685 -42 2365 68 3 0 chr1 119121206 119121516 -123542837 + AluY SINE Alu 1 311 0 856 195 84 188 chr1 119121516 119121606 -123542747 + LTR8A LTR ERV1 685 620 -107 2361 28 41 3 chr1 119121606 119121896 -123542457 - AluY SINE Alu -10 301 1 856 195 84 188 chr1 119121896 119121995 -123542358 + LTR8A LTR ERV1 619 727 0 2372 184 102 91 chr1 119122066 119122744 -123541609 - L1ME1 LINE L1 -5 6161 5477 620 282 12 6 chr1 119124145 119124308 -123540045 - MIR3 SINE MIR -8 200 37 227 200 0 55 chr1 119125570 119125625 -123538728 + GA-rich Low_complexity Low_complexity 2 53 0 6417 144 15 26 chr1 119126854 119128578 -123535775 + L1PB4 LINE L1 4124 5822 -334 2007 100 11 0 chr1 119128578 119128859 -123535494 + AluY SINE Alu 22 305 -6 6417 144 15 26 chr1 119128859 119129191 -123535162 + L1PB4 LINE L1 5822 6156 0 1656 170 17 0 chr1 119130750 119131038 -123533315 + AluJo SINE Alu 1 293 -19 240 143 0 0 chr1 119131038 119131080 -123533273 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 361 215 65 48 chr1 119131119 119131195 -123533158 + MIR3 SINE MIR 72 154 -54 739 203 74 65 chr1 119131195 119131412 -123532941 + MER20 DNA MER1_type 1 219 0 361 215 65 48 chr1 119131412 119131440 -123532913 + MIR3 SINE MIR 154 180 -28 444 236 108 6 chr1 119132018 119132175 -123532178 - MER117 DNA MER1_type -21 176 4 373 277 152 0 chr1 119132237 119132349 -123532004 + L2 LINE L2 3184 3312 -1 1960 90 62 7 chr1 119132673 119132961 -123531392 - AluSg SINE Alu -6 304 1 418 296 172 5 chr1 119132973 119133176 -123531177 - MIR SINE MIR -8 254 18 790 136 101 0 chr1 119133511 119133680 -123530673 + MER53 DNA DNA 1 186 -3 189 0 0 0 chr1 119133939 119133960 -123530393 + (TGG)n Simple_repeat Simple_repeat 3 23 0 321 26 0 0 chr1 119134436 119134474 -123529879 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 303 114 0 chr1 119134481 119134613 -123529740 + MIR3 SINE MIR 28 174 -34 2175 148 117 29 chr1 119135790 119136210 -123528143 - MSTB2 LTR MaLR 0 457 1 376 295 101 0 chr1 119136821 119136950 -123527403 + MIR SINE MIR 70 211 -51 262 268 0 0 chr1 119137061 119137117 -123527236 - L2 LINE L2 0 3313 3258 552 308 118 5 chr1 119137187 119137408 -123526945 - MIR SINE MIR -2 260 15 362 212 257 9 chr1 119138417 119138530 -123525823 + MER5A DNA MER1_type 42 182 -7 235 77 0 0 chr1 119138609 119138648 -123525705 - Alu SINE Alu 0 301 263 262 268 0 0 chr1 119138669 119138725 -123525628 + L2 LINE L2 3258 3313 0 1867 100 0 0 chr1 119138915 119139165 -123525188 - AluSc SINE Alu -59 250 1 1437 234 73 5 chr1 119139165 119139575 -123524778 + Charlie4a DNA MER1_type 71 508 0 2151 93 10 16 chr1 119140078 119140390 -123523963 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr1 119140416 119140442 -123523911 + AT_rich Low_complexity Low_complexity 1 26 0 282 241 19 74 chr1 119140964 119141072 -123523281 + MIR SINE MIR 89 190 -72 2251 184 64 2 chr1 119141146 119141586 -123522767 - MLT1C LTR MaLR 0 467 1 368 328 100 42 chr1 119141823 119142134 -123522219 - L2 LINE L2 -126 3146 2818 225 65 0 0 chr1 119142300 119142331 -123522022 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 182 261 31 15 chr1 119142378 119142443 -123521910 - L2 LINE L2 -665 2649 2584 1919 118 3 54 chr1 119142542 119142857 -123521496 - AluJb SINE Alu -13 299 1 1843 194 102 12 chr1 119143109 119143532 -123520821 + MLT1C LTR MaLR 7 467 0 213 286 105 38 chr1 119145535 119145640 -123518713 + MIR SINE MIR 16 127 -81 2466 61 0 0 chr1 119147605 119147915 -123516438 - AluY SINE Alu -1 310 1 23 33 0 0 chr1 119148228 119148258 -123516095 + AT_rich Low_complexity Low_complexity 1 30 0 804 85 76 0 chr1 119148595 119148713 -123515640 - AluY SINE Alu -10 301 175 967 268 123 22 chr1 119150189 119150644 -123513709 - LTR33 LTR ERVL -7 514 14 506 229 81 2 chr1 119150685 119150849 -123513504 + MIR SINE MIR 16 192 -70 458 275 96 70 chr1 119150953 119151182 -123513171 + MIR SINE MIR 3 237 -25 669 278 94 0 chr1 119151186 119151398 -123512955 + MIR SINE MIR 31 262 0 484 328 48 26 chr1 119151812 119152041 -123512312 - MIR SINE MIR -6 256 23 203 164 55 73 chr1 119152193 119152248 -123512105 + MIR3 SINE MIR 144 197 -11 2323 90 3 0 chr1 119152897 119153243 -123511110 + AluSp SINE Alu 2 348 0 831 189 195 0 chr1 119153338 119153528 -123510825 - MIR SINE MIR -21 241 15 367 329 21 21 chr1 119153713 119153856 -123510497 - MIR SINE MIR -11 251 109 24 0 0 0 chr1 119154048 119154072 -123510281 + AT_rich Low_complexity Low_complexity 1 24 0 435 320 60 56 chr1 119154091 119154341 -123510012 + MIR SINE MIR 12 262 0 215 307 0 27 chr1 119154476 119154551 -123509802 - MIR SINE MIR -119 89 17 188 268 107 0 chr1 119154539 119154595 -123509758 + MIR SINE MIR 105 166 -96 * 269 86 0 0 chr1 119155153 119155188 -123509165 - U2 snRNA snRNA -153 35 1 227 264 0 0 chr1 119156242 119156295 -123508058 - L2 LINE L2 -5 3308 3256 2140 156 0 9 chr1 119157041 119157356 -123506997 + AluJo SINE Alu 1 312 0 1257 167 0 0 chr1 119158654 119158858 -123505495 - MER3 DNA MER1_type 0 209 6 893 247 104 19 chr1 119159541 119159849 -123504504 + MLT1J1 LTR MaLR 1 334 -112 655 245 72 35 chr1 119161113 119161348 -123503005 - MIR SINE MIR -3 259 20 228 331 24 47 chr1 119161362 119161489 -123502864 - L2 LINE L2 -10 3303 3180 453 293 52 35 chr1 119161753 119161927 -123502426 + MIR SINE MIR 86 262 0 435 251 40 78 chr1 119162013 119162225 -123502128 - MIR SINE MIR -54 208 9 286 291 39 87 chr1 119162546 119162752 -123501601 + MIR SINE MIR 7 202 -60 379 301 68 12 chr1 119163504 119163667 -123500686 - MIR3 SINE MIR -7 201 30 628 259 7 0 chr1 119163839 119163974 -123500379 - MIR SINE MIR -93 169 34 204 217 150 0 chr1 119164549 119164609 -123499744 + L3 LINE CR1 1379 1447 -130 265 299 128 8 chr1 119164987 119165104 -123499249 - MIR SINE MIR -119 143 13 782 286 69 3 chr1 119165988 119166292 -123498061 - L3 LINE CR1 -39 1538 1215 247 86 0 0 chr1 119166416 119166451 -123497902 - U2 snRNA snRNA -152 36 2 249 366 30 11 chr1 119166586 119166738 -123497615 - MIR3 SINE MIR -66 142 4 390 215 33 66 chr1 119166780 119166901 -123497452 - MIR SINE MIR -10 252 136 661 217 30 30 chr1 119167148 119167314 -123497039 + MIR SINE MIR 56 221 -41 212 304 0 0 chr1 119167517 119167573 -123496780 - L3 LINE CR1 -1 1576 1521 655 306 58 16 chr1 119167853 119168095 -123496258 - MIR SINE MIR 0 262 11 1950 79 8 16 chr1 119168110 119168363 -123495990 + AluSx SINE Alu 55 305 -7 351 330 44 44 chr1 119168538 119168741 -123495612 - L2 LINE L2 -26 3287 3085 1697 134 0 8 chr1 119168835 119169074 -123495279 + AluJo SINE Alu 1 237 -75 3383 123 24 142 chr1 119219324 119220104 -123444249 - LTR8 LTR ERV1 -3 688 1 2362 65 0 14 chr1 119220748 119221077 -123443276 + AluY SINE Alu 1 311 0 640 267 43 30 chr1 119221168 119221400 -123442953 - L2 LINE L2 0 3313 3079 2780 142 40 7 chr1 119221411 119221904 -123442449 + MER44D DNA MER2_type 1 609 0 208 227 409 11 chr1 119221906 119221994 -123442359 - L2 LINE L2 -244 3069 2947 870 194 11 80 chr1 119222788 119222898 -123441455 + FAM SINE Alu 1 96 -215 1695 163 6 31 chr1 119222898 119223217 -123441136 + AluJo SINE Alu 1 311 -1 870 194 11 80 chr1 119223217 119223281 -123441072 + FAM SINE Alu 96 163 -12 2382 75 10 0 chr1 119223294 119223589 -123440764 + AluSx SINE Alu 7 304 -8 2478 62 7 10 chr1 119223589 119223897 -123440456 + AluSq SINE Alu 1 307 -6 2304 73 21 0 chr1 119223899 119224185 -123440168 + AluSg SINE Alu 3 294 -16 2204 101 20 0 chr1 119225167 119225464 -123438889 - AluSx SINE Alu -9 303 1 2002 130 11 7 chr1 119226026 119226311 -123438042 + AluJb SINE Alu 1 286 -26 200 167 0 0 chr1 119226311 119226341 -123438012 + (TG)n Simple_repeat Simple_repeat 1 30 0 1941 141 7 13 chr1 119227573 119227872 -123436481 - AluJb SINE Alu -15 297 1 21 36 0 0 chr1 119227961 119227989 -123436364 + AT_rich Low_complexity Low_complexity 1 28 0 978 237 56 4 chr1 119229143 119229392 -123434961 + MIR SINE MIR 1 262 0 2369 94 0 0 chr1 119229518 119229826 -123434527 + AluY SINE Alu 1 308 -3 2068 108 17 7 chr1 119231470 119231757 -123432596 + AluJb SINE Alu 1 290 -22 759 175 17 0 chr1 119232516 119232636 -123431717 + FLAM_C SINE Alu 2 123 -20 239 0 32 0 chr1 119232639 119232670 -123431683 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2135 105 0 20 chr1 119233306 119233601 -123430752 + AluSx SINE Alu 1 289 -23 1940 143 13 7 chr1 119233670 119233970 -123430383 + AluJo SINE Alu 1 302 -10 333 93 0 0 chr1 119238054 119238097 -123426256 - Alu SINE Alu -16 285 243 261 145 101 43 chr1 119238205 119238274 -123426079 - AluJ/FLAM SINE Alu -228 74 2 1742 139 7 14 chr1 119238488 119238768 -123425585 + AluJo SINE Alu 5 282 -30 288 300 71 59 chr1 119239260 119239430 -123424923 - MIR SINE MIR -42 220 49 1628 156 20 37 chr1 119239752 119240047 -123424306 - AluJb SINE Alu -22 290 1 2220 109 0 10 chr1 119240342 119240653 -123423700 + AluSx SINE Alu 1 308 -4 26 0 0 0 chr1 119241063 119241089 -123423264 + AT_rich Low_complexity Low_complexity 1 26 0 1943 138 32 0 chr1 119242907 119243189 -123421164 + AluSg SINE Alu 14 304 -6 1795 181 13 3 chr1 119243198 119243507 -123420846 + AluJb SINE Alu 1 312 0 517 227 0 10 chr1 119244287 119244384 -123419969 - MER5A DNA MER1_type -88 101 6 638 156 57 130 chr1 119244519 119244711 -123419642 + MER5B DNA MER1_type 1 178 0 2077 123 0 3 chr1 119244810 119245110 -123419243 + AluSg SINE Alu 1 299 -11 526 266 8 8 chr1 119245210 119245334 -123419019 - MIR3 SINE MIR -48 160 37 227 200 0 55 chr1 119246596 119246651 -123417702 + GA-rich Low_complexity Low_complexity 2 53 0 6563 144 15 26 chr1 119247880 119249604 -123414749 + L1PB4 LINE L1 4124 5822 -334 2109 100 11 0 chr1 119249604 119249885 -123414468 + AluY SINE Alu 22 305 -6 6563 144 15 26 chr1 119249885 119250217 -123414136 + L1PB4 LINE L1 5822 6156 0 1656 170 17 0 chr1 119251776 119252064 -123412289 + AluJo SINE Alu 1 293 -19 240 143 0 0 chr1 119252064 119252106 -123412247 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 361 215 65 48 chr1 119252145 119252221 -123412132 + MIR3 SINE MIR 72 154 -54 739 203 74 65 chr1 119252221 119252438 -123411915 + MER20 DNA MER1_type 1 219 0 361 215 65 48 chr1 119252438 119252466 -123411887 + MIR3 SINE MIR 154 180 -28 444 236 108 6 chr1 119253044 119253201 -123411152 - MER117 DNA MER1_type -21 176 4 373 277 152 0 chr1 119253263 119253375 -123410978 + L2 LINE L2 3184 3312 -1 1960 90 62 7 chr1 119253699 119253987 -123410366 - AluSg SINE Alu -6 304 1 418 296 172 5 chr1 119253999 119254202 -123410151 - MIR SINE MIR -8 254 18 790 136 101 0 chr1 119254537 119254706 -123409647 + MER53 DNA DNA 1 186 -3 189 0 0 0 chr1 119254965 119254986 -123409367 + (TGG)n Simple_repeat Simple_repeat 3 23 0 321 26 0 0 chr1 119255462 119255500 -123408853 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 303 114 0 chr1 119255507 119255639 -123408714 + MIR3 SINE MIR 28 174 -34 2175 148 117 29 chr1 119256816 119257236 -123407117 - MSTB2 LTR MaLR 0 457 1 376 295 101 0 chr1 119257847 119257976 -123406377 + MIR SINE MIR 70 211 -51 262 268 0 0 chr1 119258087 119258143 -123406210 - L2 LINE L2 0 3313 3258 552 308 118 5 chr1 119258213 119258434 -123405919 - MIR SINE MIR -2 260 15 362 212 257 9 chr1 119259443 119259556 -123404797 + MER5A DNA MER1_type 42 182 -7 235 77 0 0 chr1 119259635 119259674 -123404679 - Alu SINE Alu 0 301 263 262 268 0 0 chr1 119259695 119259751 -123404602 + L2 LINE L2 3258 3313 0 1867 100 0 0 chr1 119259941 119260191 -123404162 - AluSc SINE Alu -59 250 1 1437 234 73 5 chr1 119260191 119260601 -123403752 + Charlie4a DNA MER1_type 71 508 0 2151 93 10 16 chr1 119261104 119261416 -123402937 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr1 119261442 119261468 -123402885 + AT_rich Low_complexity Low_complexity 1 26 0 282 241 19 74 chr1 119261990 119262098 -123402255 + MIR SINE MIR 89 190 -72 2251 184 64 2 chr1 119262172 119262612 -123401741 - MLT1C LTR MaLR 0 467 1 368 328 100 42 chr1 119262849 119263160 -123401193 - L2 LINE L2 -126 3146 2818 225 65 0 0 chr1 119263326 119263357 -123400996 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 182 261 31 15 chr1 119263404 119263469 -123400884 - L2 LINE L2 -665 2649 2584 1902 118 3 54 chr1 119263568 119263881 -123400472 - AluJb SINE Alu -15 297 1 1855 191 102 12 chr1 119264133 119264556 -123399797 + MLT1C LTR MaLR 7 467 0 213 286 105 38 chr1 119266558 119266663 -123397690 + MIR SINE MIR 16 127 -81 2466 61 0 0 chr1 119268628 119268938 -123395415 - AluY SINE Alu -1 310 1 23 33 0 0 chr1 119269251 119269281 -123395072 + AT_rich Low_complexity Low_complexity 1 30 0 780 70 96 0 chr1 119269621 119269736 -123394617 - AluY SINE Alu -11 300 175 1120 266 123 22 chr1 119271216 119271671 -123392682 - LTR33 LTR ERVL -7 514 14 503 229 81 2 chr1 119271712 119271876 -123392477 + MIR SINE MIR 16 192 -70 455 275 96 70 chr1 119271980 119272209 -123392144 + MIR SINE MIR 3 237 -25 673 278 94 0 chr1 119272213 119272425 -123391928 + MIR SINE MIR 31 262 0 494 266 92 70 chr1 119272839 119273068 -123391285 - MIR SINE MIR -6 256 23 203 164 55 73 chr1 119273220 119273275 -123391078 + MIR3 SINE MIR 144 197 -11 2180 90 3 0 chr1 119273924 119274270 -123390083 + AluSp SINE Alu 2 348 0 829 189 195 0 chr1 119274365 119274555 -123389798 - MIR SINE MIR -21 241 15 364 329 21 21 chr1 119274740 119274883 -123389470 - MIR SINE MIR -11 251 109 24 0 0 0 chr1 119275075 119275099 -123389254 + AT_rich Low_complexity Low_complexity 1 24 0 444 320 60 56 chr1 119275118 119275368 -123388985 + MIR SINE MIR 12 262 0 211 307 0 27 chr1 119275503 119275578 -123388775 - MIR SINE MIR -119 89 17 185 208 125 0 chr1 119275566 119275614 -123388739 + MIR SINE MIR 105 158 -104 * 297 103 0 0 chr1 119276175 119276214 -123388139 - U2 snRNA snRNA -149 39 1 228 264 0 0 chr1 119277268 119277321 -123387032 - L2 LINE L2 -5 3308 3256 1987 153 0 10 chr1 119278067 119278381 -123385972 + AluJo SINE Alu 1 311 -1 1312 167 0 0 chr1 119279684 119279888 -123384465 - MER3 DNA MER1_type 0 209 6 975 247 104 19 chr1 119280571 119280879 -123383474 + MLT1J1 LTR MaLR 1 334 -112 652 237 99 35 chr1 119282143 119282392 -123381961 - MIR SINE MIR -3 259 1 229 331 24 47 chr1 119282392 119282519 -123381834 - L2 LINE L2 -10 3303 3180 447 299 52 35 chr1 119282783 119282957 -123381396 + MIR SINE MIR 86 262 0 426 251 40 78 chr1 119283043 119283255 -123381098 - MIR SINE MIR -54 208 9 284 291 39 87 chr1 119283576 119283782 -123380571 + MIR SINE MIR 7 202 -60 189 290 16 0 chr1 119284070 119284132 -123380221 + L2 LINE L2 3206 3268 -4 365 301 68 12 chr1 119284614 119284777 -123379576 - MIR3 SINE MIR -7 201 30 626 259 7 0 chr1 119284949 119285084 -123379269 - MIR SINE MIR -93 169 34 203 217 150 0 chr1 119285659 119285719 -123378634 + L3 LINE CR1 1379 1447 -130 263 299 128 8 chr1 119286097 119286214 -123378139 - MIR SINE MIR -119 143 13 767 286 69 3 chr1 119287098 119287402 -123376951 - L3 LINE CR1 -39 1538 1215 242 114 0 0 chr1 119287526 119287561 -123376792 - U2 snRNA snRNA -152 36 2 249 366 30 11 chr1 119287696 119287848 -123376505 - MIR3 SINE MIR -66 142 4 403 215 33 66 chr1 119287890 119288011 -123376342 - MIR SINE MIR -10 252 136 657 217 30 30 chr1 119288258 119288424 -123375929 + MIR SINE MIR 56 221 -41 210 304 0 0 chr1 119288627 119288683 -123375670 - L3 LINE CR1 -1 1576 1521 642 306 58 16 chr1 119288963 119289205 -123375148 - MIR SINE MIR 0 262 11 1821 85 8 16 chr1 119289220 119289478 -123374875 + AluSx SINE Alu 55 310 -2 347 330 44 44 chr1 119289653 119289856 -123374497 - L2 LINE L2 -26 3287 3085 1875 131 3 14 chr1 119289950 119290240 -123374113 + AluJo SINE Alu 1 287 -25 503 291 132 3 chr1 119290533 119290737 -123373616 + MIR SINE MIR 39 261 -1 201 312 55 55 chr1 119291936 119292045 -123372308 - L2 LINE L2 -14 3258 3150 1705 263 13 0 chr1 119292141 119292536 -123371817 + LTR16A LTR ERVL 42 441 -9 1291 165 0 0 chr1 119292688 119292906 -123371447 + AluJb SINE Alu 86 303 -9 270 0 0 0 chr1 119292943 119292973 -123371380 + (TAA)n Simple_repeat Simple_repeat 2 31 0 185 333 0 0 chr1 119293004 119293067 -123371286 - L2 LINE L2 -973 2341 2279 999 246 121 29 chr1 119293092 119293594 -123370759 + MLT1H1 LTR MaLR 8 543 -12 246 232 90 102 chr1 119293693 119293870 -123370483 + L2 LINE L2 2639 2813 -501 1545 202 113 74 chr1 119293896 119294008 -123370345 + MLT2B1 LTR ERVL 1 107 -413 1815 147 0 13 chr1 119294008 119294307 -123370046 + AluSx SINE Alu 2 296 -16 1545 202 113 74 chr1 119294307 119294540 -123369813 + MLT2B1 LTR ERVL 107 371 -149 2263 89 0 3 chr1 119294540 119294842 -123369511 + AluSp SINE Alu 1 301 -12 1545 202 113 74 chr1 119294842 119294956 -123369397 + MLT2B1 LTR ERVL 371 479 -41 2015 156 18 9 chr1 119294965 119295304 -123369049 + MER7A DNA MER2_type 2 341 -5 234 196 18 0 chr1 119295340 119295396 -123368957 + A-rich Low_complexity Low_complexity 3 59 0 22 70 0 0 chr1 119295652 119295695 -123368658 + AT_rich Low_complexity Low_complexity 1 43 0 254 313 0 0 chr1 119295927 119295991 -123368362 - L2 LINE L2 0 3313 3250 417 235 55 27 chr1 119296093 119296293 -123368060 + L2 LINE L2 3138 3313 0 2005 145 0 19 chr1 119296915 119297233 -123367120 - AluSx SINE Alu 0 312 1 504 261 162 72 chr1 119297557 119298189 -123366164 - L2 LINE L2 0 3313 2542 252 229 62 83 chr1 119298528 119298624 -123365729 - L3 LINE CR1 -12 1565 1472 194 200 0 0 chr1 119298798 119298833 -123365520 - MIR SINE MIR -146 116 82 26 0 0 0 chr1 119299067 119299093 -123365260 + AT_rich Low_complexity Low_complexity 1 26 0 1907 148 0 0 chr1 119299249 119299546 -123364807 - AluSx SINE Alu -15 297 1 1953 136 7 0 chr1 119299626 119299927 -123364426 - AluSx SINE Alu -9 303 1 402 127 0 0 chr1 119300136 119300191 -123364162 + Alu SINE Alu 1 55 -245 604 255 7 7 chr1 119300885 119301038 -123363315 + MIR SINE MIR 110 262 0 2440 77 0 10 chr1 119301356 119301667 -123362686 + AluY SINE Alu 1 308 -3 2304 95 0 7 chr1 119301666 119301971 -123362382 + AluSq SINE Alu 1 303 -10 * 1172 255 87 27 chr1 119302198 119302531 -123361822 + MLT1J LTR MaLR 1 353 -158 2084 106 1 13 chr1 119302601 119303146 -123361207 - MER4A LTR ERV1 0 664 1 638 230 80 38 chr1 119303146 119303293 -123361060 - L1MC4 LINE L1 -192 7850 7688 1573 125 157 3 chr1 119303293 119303432 -123360921 + MER46B DNA MER2_type 1 117 -2614 2367 85 3 0 chr1 119303432 119303726 -123360627 - AluSx SINE Alu -17 295 1 1573 125 157 3 chr1 119303726 119303899 -123360454 + MER46B DNA MER2_type 117 236 0 638 230 80 38 chr1 119303899 119303990 -123360363 - L1MC4 LINE L1 -354 7688 7602 1740 130 68 24 chr1 119304143 119304266 -123360087 + AluSq SINE Alu 1 117 -196 1337 217 86 51 chr1 119304266 119304573 -123359780 - LTR2 LTR ERV1 -1 448 120 2485 63 3 7 chr1 119304573 119304872 -123359481 - AluY SINE Alu -13 298 1 1337 217 86 51 chr1 119304872 119304997 -123359356 - LTR2 LTR ERV1 -329 120 1 1740 130 68 24 chr1 119304997 119305165 -123359188 + AluSq SINE Alu 117 305 -8 883 128 0 6 chr1 119305337 119305587 -123358766 + AluJb SINE Alu 1 297 -15 874 134 14 14 chr1 119305821 119305963 -123358390 - BC200 scRNA scRNA -53 147 6 816 268 84 23 chr1 119306035 119306528 -123357825 + L1ME3A LINE L1 5086 5609 -555 828 120 0 32 chr1 119306536 119306661 -123357692 - FLAM_A SINE Alu -2 140 20 743 239 22 102 chr1 119306674 119306788 -123357565 + L1ME3A LINE L1 5613 5734 -436 2322 152 67 5 chr1 119306788 119307189 -123357164 - MSTB LTR MaLR 0 426 1 743 239 22 102 chr1 119307189 119307438 -123356915 + L1ME3A LINE L1 5734 5947 -223 704 198 256 10 chr1 119307803 119308010 -123356343 - MIR SINE MIR 0 262 5 530 167 0 10 chr1 119308109 119308205 -123356148 + L1MB7 LINE L1 6081 6175 -9 1007 151 0 42 chr1 119308672 119308838 -123355515 + AluSg/x SINE Alu 122 280 -32 279 0 0 0 chr1 119308838 119308869 -123355484 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2005 131 6 26 chr1 119308957 119309269 -123355084 - AluSx SINE Alu -6 306 1 1847 187 0 3 chr1 119309503 119309813 -123354540 + AluJo SINE Alu 1 309 -3 1493 151 14 2 chr1 119309873 119310159 -123354194 + MER1B DNA MER1_type 1 339 0 312 27 0 0 chr1 119310303 119310340 -123354013 + (CA)n Simple_repeat Simple_repeat 2 38 0 738 165 0 8 chr1 119310877 119310998 -123353355 + L1MC5 LINE L1 6682 6801 -1160 407 189 88 34 chr1 119310999 119311147 -123353206 + L1MC5 LINE L1 7772 7927 -34 26 64 0 0 chr1 119312489 119312536 -123351817 + GC_rich Low_complexity Low_complexity 1 47 0 210 176 0 0 chr1 119318375 119318426 -123345927 + T-rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr1 119320243 119320265 -123344088 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr1 119322054 119322097 -123342256 + AT_rich Low_complexity Low_complexity 1 43 0 1869 132 4 4 chr1 119323901 119324167 -123340186 - AluSx SINE Alu -46 266 1 233 306 0 12 chr1 119324493 119324578 -123339775 - MIR SINE MIR -12 250 167 199 335 53 48 chr1 119324701 119324889 -123339464 - MER5A DNA MER1_type 0 189 1 293 317 25 42 chr1 119325556 119325676 -123338677 - L2 LINE L2 -14 3299 3182 277 207 18 72 chr1 119325696 119325807 -123338546 - L2 LINE L2 -507 2807 2703 2720 99 20 172 chr1 119326482 119327117 -123337236 - LTR8 LTR ERV1 -152 539 1 239 317 115 10 chr1 119327117 119327221 -123337132 - MIR SINE MIR -128 134 20 321 175 63 0 chr1 119327383 119327446 -123336907 + MER94 DNA DNA 1 67 -67 1875 147 7 7 chr1 119327826 119328112 -123336241 + AluJb SINE Alu 1 286 -26 369 269 63 80 chr1 119328265 119328503 -123335850 + MIR SINE MIR 11 244 -18 483 293 49 24 chr1 119329821 119330067 -123334286 + L2 LINE L2 1720 1971 -1343 186 103 0 0 chr1 119330217 119330246 -123334107 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 385 213 6 109 chr1 119330256 119330430 -123333923 - L2 LINE L2 -20 3293 3138 1868 158 10 0 chr1 119331816 119332107 -123332246 - AluSx SINE Alu -18 294 1 4311 107 27 5 chr1 119332522 119333149 -123331204 + L1PA16 LINE L1 5517 6157 -9 412 256 45 13 chr1 119333476 119333632 -123330721 + L1MC4 LINE L1 7616 7776 -266 376 235 144 7 chr1 119333645 119333798 -123330555 + L1MC4 LINE L1 7804 7977 -65 2134 119 3 3 chr1 119335115 119335409 -123328944 - AluSx SINE Alu -18 294 1 1699 166 7 14 chr1 119335495 119335784 -123328569 - AluJb SINE Alu -16 296 10 220 305 0 0 chr1 119335853 119335912 -123328441 + (CA)n Simple_repeat Simple_repeat 2 60 0 479 146 49 0 chr1 119335913 119335995 -123328358 + MER68 LTR ERV1 84 169 -393 228 293 147 17 chr1 119336210 119336326 -123328027 + MIR SINE MIR 57 187 -75 2922 173 36 13 chr1 119336746 119337273 -123327080 + MER68 LTR ERV1 1 539 -23 2106 191 46 68 chr1 119337310 119337827 -123326526 - MLT2B1 LTR ERVL -14 506 1 185 174 101 14 chr1 119337934 119338003 -123326350 + MIR SINE MIR 129 203 -59 238 230 122 14 chr1 119338005 119338079 -123326274 - L2 LINE L2 0 3272 3191 221 324 0 45 chr1 119338080 119338158 -123326195 - L2 LINE L2 -459 2855 2782 1899 142 14 17 chr1 119338158 119338453 -123325900 - AluSx SINE Alu -18 294 1 221 324 0 45 chr1 119338453 119338485 -123325868 - L2 LINE L2 -532 2782 2750 6188 98 47 88 chr1 119338528 119340000 -123324353 - pTR5 LTR ERV1 -143 2295 743 1388 176 29 8 chr1 119340003 119340273 -123324080 + AluSx SINE Alu 34 308 0 228 250 0 0 chr1 119340304 119340356 -123323997 + MIR SINE MIR 209 260 -2 2289 96 20 0 chr1 119340521 119340823 -123323530 - AluSp SINE Alu -5 308 1 233 241 250 9 chr1 119340884 119340992 -123323361 + MIR SINE MIR 129 262 0 2244 111 0 3 chr1 119341073 119341370 -123322983 - AluSx SINE Alu -16 296 1 2055 148 0 3 chr1 119341680 119341985 -123322368 + AluSx SINE Alu 1 304 -8 385 283 127 12 chr1 119342004 119342091 -123322262 - L2 LINE L2 0 3313 3237 2239 112 10 0 chr1 119342091 119342395 -123321958 + AluSx SINE Alu 1 307 -5 385 283 127 12 chr1 119342395 119342480 -123321873 - L2 LINE L2 -76 3237 3121 1606 136 90 32 chr1 119342737 119343016 -123321337 - AluJo SINE Alu -17 295 1 2575 68 3 0 chr1 119343095 119343402 -123320951 + AluY SINE Alu 1 308 -3 193 156 0 78 chr1 119343471 119343535 -123320818 + MIR SINE MIR 136 194 -68 1311 177 169 32 chr1 119343552 119343790 -123320563 + Tigger2a DNA MER2_type 4 208 -2500 2223 82 0 4 chr1 119343790 119344069 -123320284 + AluSc SINE Alu 1 278 -31 216 0 0 0 chr1 119344076 119344100 -123320253 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1311 177 169 32 chr1 119344100 119344197 -123320156 + Tigger2a DNA MER2_type 213 394 -40 282 262 40 24 chr1 119344785 119344911 -123319442 - L1ME4a LINE L1 -2 6119 5992 572 167 46 0 chr1 119344917 119345025 -123319328 - FLAM_A SINE Alu -7 135 23 3610 119 129 2 chr1 119345071 119345350 -123319003 + Tigger3b DNA MER2_type 1 243 -2786 2257 96 17 0 chr1 119345350 119345643 -123318710 - AluSx SINE Alu -14 298 1 3610 119 129 2 chr1 119345643 119345984 -123318369 + Tigger3b DNA MER2_type 243 697 -535 1511 150 169 19 chr1 119345984 119346298 -123318055 + Tigger3b DNA MER2_type 872 1232 0 1941 148 3 16 chr1 119346424 119346729 -123317624 + AluJb SINE Alu 1 301 -11 2340 100 3 0 chr1 119347864 119348163 -123316190 + AluSx SINE Alu 1 300 -12 2136 94 0 14 chr1 119348267 119348544 -123315809 - AluSq SINE Alu -40 273 1 23 33 0 0 chr1 119348546 119348576 -123315777 + AT_rich Low_complexity Low_complexity 1 30 0 794 133 0 17 chr1 119348590 119348710 -123315643 - FLAM_C SINE Alu -15 118 1 423 163 81 0 chr1 119348725 119348811 -123315542 + MIR SINE MIR 159 251 -11 197 315 19 80 chr1 119348791 119348953 -123315400 - MIR SINE MIR -83 179 28 * 267 256 93 0 chr1 119349010 119349096 -123315257 + MIR SINE MIR 157 250 -12 2453 60 10 0 chr1 119349622 119349921 -123314432 + AluSp SINE Alu 1 302 -11 1465 91 11 0 chr1 119351292 119351479 -123312874 + AluSg/x SINE Alu 110 298 -14 23 33 0 0 chr1 119351856 119351886 -123312467 + AT_rich Low_complexity Low_complexity 1 30 0 195 286 0 18 chr1 119351946 119352002 -123312351 - MER5A DNA MER1_type -115 74 20 2274 75 3 0 chr1 119352308 119352602 -123311751 + AluY SINE Alu 1 295 -16 996 153 12 0 chr1 119352735 119352898 -123311455 - AluJb SINE Alu -25 287 123 23 33 0 0 chr1 119352920 119352950 -123311403 + AT_rich Low_complexity Low_complexity 1 30 0 1041 201 0 60 chr1 119352990 119353224 -123311129 - AluJo SINE Alu -92 220 1 1116 128 174 58 chr1 119353669 119353927 -123310426 - MER7A DNA MER2_type -1 345 60 1817 117 4 7 chr1 119354002 119354276 -123310077 + AluSx SINE Alu 27 299 -13 306 0 0 0 chr1 119354302 119354336 -123310017 + (TG)n Simple_repeat Simple_repeat 2 35 0 710 168 29 29 chr1 119354354 119354491 -123309862 + FLAM_C SINE Alu 6 142 -1 212 171 0 0 chr1 119354654 119354689 -123309664 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 404 241 93 9 chr1 119355208 119355316 -123309037 + L2 LINE L2 3195 3311 -2 369 320 0 10 chr1 119355885 119355988 -123308365 - MIR SINE MIR -149 113 12 2590 36 0 0 chr1 119357289 119357598 -123306755 - AluYa5 SINE Alu -2 309 1 207 0 0 0 chr1 119357662 119357685 -123306668 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 1628 152 19 7 chr1 119358370 119358640 -123305713 - AluJo SINE Alu -39 273 1 870 165 0 80 chr1 119358711 119358873 -123305480 - AluJo SINE Alu -17 295 150 1997 136 7 0 chr1 119358873 119359168 -123305185 - AluSx SINE Alu -15 297 1 870 165 0 80 chr1 119359168 119359205 -123305148 - AluJo SINE Alu -162 150 112 1456 166 113 52 chr1 119360580 119360924 -123303429 - MLT1A1 LTR MaLR 0 365 1 682 140 0 0 chr1 119360999 119361099 -123303254 - AluJ/FLAM SINE Alu -211 101 2 1983 188 35 21 chr1 119361310 119361741 -123302612 + L1MB7 LINE L1 5748 6184 0 616 167 125 42 chr1 119363201 119363345 -123301008 + MIR SINE MIR 7 162 -100 277 324 0 20 chr1 119365365 119365467 -123298886 + MER5A DNA MER1_type 44 143 -46 410 261 65 36 chr1 119365521 119365659 -123298694 + MIR SINE MIR 48 189 -73 191 184 61 41 chr1 119366641 119366690 -123297663 + MIR SINE MIR 27 76 -132 2276 83 3 0 chr1 119367061 119367361 -123296992 + AluSc SINE Alu 1 301 -8 753 113 0 0 chr1 119367372 119367478 -123296875 + FLAM_C SINE Alu 3 108 -35 330 315 31 50 chr1 119367550 119367772 -123296581 + Charlie8 DNA MER1_type 2200 2417 0 191 194 0 0 chr1 119367778 119367814 -123296539 + MIR SINE MIR 111 146 -62 447 288 54 53 chr1 119367817 119368002 -123296351 + MIR SINE MIR 7 192 -66 243 272 248 0 chr1 119368010 119368135 -123296218 - MIR SINE MIR 0 262 107 3761 162 19 16 chr1 119368448 119368842 -123295511 - L1MB3 LINE L1 -1 6182 5784 297 51 0 0 chr1 119368842 119368881 -123295472 + (CA)n Simple_repeat Simple_repeat 2 40 0 3761 162 19 16 chr1 119368881 119369183 -123295170 - L1MB3 LINE L1 -399 5784 5484 385 110 27 14 chr1 119369184 119369257 -123295096 + CT-rich Low_complexity Low_complexity 1 74 0 1300 155 46 62 chr1 119369260 119369445 -123294908 - L1MB3 LINE L1 -684 5487 5300 2272 97 7 0 chr1 119369445 119369753 -123294600 + AluSg SINE Alu 1 310 0 1300 155 46 62 chr1 119369753 119370002 -123294351 - L1MB3 LINE L1 -871 5300 5057 1850 136 0 13 chr1 119370058 119370359 -123293994 - AluJb SINE Alu -14 298 2 333 222 213 0 chr1 119370855 119370963 -123293390 - L1MC4 LINE L1 0 8042 7912 211 200 0 22 chr1 119370968 119371013 -123293340 + CT-rich Low_complexity Low_complexity 4 47 0 289 194 72 0 chr1 119371023 119371162 -123293191 + (TA)n Simple_repeat Simple_repeat 2 150 0 665 188 68 94 chr1 119371165 119371226 -123293127 - L1MC4 LINE L1 -130 7912 7851 2302 78 3 0 chr1 119371226 119371519 -123292834 - AluSq SINE Alu -19 294 1 665 188 68 94 chr1 119371519 119371691 -123292662 - L1MC4 LINE L1 -191 7851 7685 755 237 43 48 chr1 119372010 119372217 -123292136 + MIR SINE MIR 21 226 -36 1835 210 65 72 chr1 119372566 119373137 -123291216 - MER74B LTR ERVL 0 622 56 371 336 37 0 chr1 119373245 119373352 -123291001 + L2 LINE L2 3112 3222 -50 406 259 78 9 chr1 119373547 119373663 -123290690 - L2 LINE L2 -16 3256 3133 239 280 43 21 chr1 119373897 119373990 -123290363 + MLT1J LTR MaLR 228 322 -189 368 191 75 21 chr1 119374027 119374121 -123290232 + MLT1L LTR MaLR 513 611 -4 773 158 0 38 chr1 119374177 119374310 -123290043 - FLAM_C SINE Alu -1 132 5 209 295 101 29 chr1 119374323 119374462 -123289891 - L2 LINE L2 -237 3035 2887 1699 139 11 18 chr1 119375471 119375752 -123288601 - MER50 LTR ERV1 -23 711 433 1554 116 18 0 chr1 119375746 119375971 -123288382 - MER50 LTR ERV1 -505 229 1 * 345 266 165 19 chr1 119376229 119376387 -123287966 + MIR SINE MIR 47 227 -35 240 279 44 0 chr1 119376418 119376486 -123287867 + MIR SINE MIR 81 151 -57 214 154 0 58 chr1 119376671 119376723 -123287630 + CT-rich Low_complexity Low_complexity 4 52 0 368 308 18 13 chr1 119377275 119377403 -123286950 - MIR SINE MIR -47 161 36 186 242 264 33 chr1 119377911 119378002 -123286351 + MIR SINE MIR 31 142 -66 225 241 121 17 chr1 119378068 119378126 -123286227 - L2 LINE L2 0 3272 3209 183 156 0 0 chr1 119379650 119379682 -123284671 + A-rich Low_complexity Low_complexity 1 32 0 1891 130 11 7 chr1 119379975 119380259 -123284094 + AluJb SINE Alu 1 285 -27 200 167 0 0 chr1 119380259 119380289 -123284064 + (TG)n Simple_repeat Simple_repeat 1 30 0 1834 141 7 13 chr1 119381521 119381820 -123282533 - AluJb SINE Alu -15 297 1 21 36 0 0 chr1 119381909 119381937 -123282416 + AT_rich Low_complexity Low_complexity 1 28 0 909 237 56 4 chr1 119383091 119383340 -123281013 + MIR SINE MIR 1 262 0 1152 127 46 66 chr1 119383450 119383466 -123280887 - MER33 DNA MER1_type -2331 254 239 2504 62 0 0 chr1 119383466 119383774 -123280579 + AluY SINE Alu 1 308 -3 2025 116 7 0 chr1 119383783 119384077 -123280276 + AluSx SINE Alu 1 296 -16 1152 127 46 66 chr1 119384077 119384309 -123280044 - MER33 DNA MER1_type -2354 231 1 1699 162 14 0 chr1 119384384 119384674 -123279679 + AluJb SINE Alu 1 294 -18 1467 184 61 7 chr1 119385118 119385412 -123278941 - AluSg SINE Alu 0 310 1 182 233 183 0 chr1 119385446 119385506 -123278847 + L2 LINE L2 3234 3304 -9 324 300 180 0 chr1 119386075 119386225 -123278128 + MIR SINE MIR 29 205 -57 3409 87 23 16 chr1 119386420 119386904 -123277449 + LTR15 LTR ERV1 1 487 -6 399 233 42 33 chr1 119387366 119387420 -123276933 - MIR SINE MIR -79 183 131 192 40 0 0 chr1 119387420 119387445 -123276908 + (CAA)n Simple_repeat Simple_repeat 2 26 0 399 233 42 33 chr1 119387445 119387510 -123276843 - MIR SINE MIR -131 131 63 313 282 24 0 chr1 119387572 119387657 -123276696 - MIR3 SINE MIR -23 185 99 2110 158 28 53 chr1 119387768 119388161 -123276192 + MLT1B LTR MaLR 1 383 -7 475 236 11 93 chr1 119389451 119389633 -123274720 + MIR SINE MIR 84 250 -12 463 207 100 40 chr1 119389692 119389842 -123274511 - LTR67 LTR ERVL -5 552 394 262 224 17 52 chr1 119389934 119389992 -123274361 - LTR67 LTR ERVL -391 166 111 820 130 0 22 chr1 119390730 119390868 -123273485 - AluJo SINE Alu -177 135 1 2357 77 10 6 chr1 119391025 119391336 -123273017 - AluSp SINE Alu -1 312 1 226 238 100 25 chr1 119391363 119391443 -123272910 + L2 LINE L2 3186 3271 -1 2832 118 18 9 chr1 119391717 119392156 -123272197 - MER65A LTR ERV1 0 445 3 399 250 125 0 chr1 119392161 119392273 -123272080 - MIR SINE MIR -65 197 72 594 267 57 0 chr1 119392886 119393062 -123271291 - MIR SINE MIR -3 259 74 319 225 0 62 chr1 119394176 119394209 -123270144 + MER34 LTR ERV1 1 35 -507 2399 164 71 112 chr1 119394209 119394967 -123269386 + LTR8A LTR ERV1 1 727 0 319 225 0 62 chr1 119394967 119395013 -123269340 + MER34 LTR ERV1 34 75 -467 1302 209 87 145 chr1 119395015 119395566 -123268787 + LTR48B LTR ERV1 115 644 0 2305 85 0 0 chr1 119395725 119396020 -123268333 - AluSx SINE Alu -15 297 3 561 227 67 5 chr1 119396093 119396287 -123268066 - LTR37B LTR ERV1 0 468 263 1291 186 12 8 chr1 119396295 119396543 -123267810 + L1MB3 LINE L1 4839 5087 -1059 1766 141 20 17 chr1 119396544 119396841 -123267512 - AluJb SINE Alu -14 298 1 1967 189 3 37 chr1 119396841 119397223 -123267130 + LTR39 LTR ERV1 415 783 0 1733 141 22 29 chr1 119397239 119397551 -123266802 + L1MB3 LINE L1 5834 6143 -40 2026 133 0 0 chr1 119397552 119397846 -123266507 + AluSx SINE Alu 3 296 -16 1092 189 3 109 chr1 119397879 119398181 -123266172 - LTR37B LTR ERV1 -198 270 1 280 268 165 21 chr1 119399616 119399713 -123264640 - MIR SINE MIR -132 130 20 25 31 0 0 chr1 119399724 119399756 -123264597 + AT_rich Low_complexity Low_complexity 1 32 0 396 271 90 43 chr1 119399756 119400033 -123264320 - L1ME4a LINE L1 -4 6117 5828 761 251 22 0 chr1 119401031 119401214 -123263139 - MER117 DNA MER1_type -10 187 1 906 132 0 0 chr1 119401326 119401455 -123262898 + FLAM_C SINE Alu 1 129 -14 1668 165 4 0 chr1 119401576 119401836 -123262517 - AluSx SINE Alu -52 260 11 1580 124 0 0 chr1 119402010 119402219 -123262134 - AluSx SINE Alu -103 209 1 2505 90 3 0 chr1 119402635 119402945 -123261408 - AluSp SINE Alu -2 311 1 245 242 16 0 chr1 119404263 119404325 -123260028 - MIR SINE MIR -139 123 61 384 284 123 20 chr1 119404357 119404561 -123259792 + LTR33 LTR ERVL 11 235 -286 383 211 137 0 chr1 119405514 119405609 -123258744 + MIR SINE MIR 151 258 -4 198 0 0 0 chr1 119405807 119405829 -123258524 + (GGGAA)n Simple_repeat Simple_repeat 2 23 0 454 135 34 0 chr1 119405829 119405918 -123258435 + GA-rich Low_complexity Low_complexity 1 92 0 270 0 0 0 chr1 119405918 119405948 -123258405 + (TA)n Simple_repeat Simple_repeat 2 31 0 2346 105 0 10 chr1 119405948 119406252 -123258101 - AluSx SINE Alu -11 301 1 451 148 0 0 chr1 119407519 119407600 -123256753 - L1MB4 LINE L1 -6 6174 6094 1976 127 67 0 chr1 119407832 119408116 -123256237 + AluSx SINE Alu 1 303 -9 412 158 37 12 chr1 119408463 119408545 -123255808 - MLT1L LTR MaLR -149 466 383 378 161 0 0 chr1 119408892 119408954 -123255399 - MER112 DNA MER1_type 0 260 199 * 942 231 9 23 chr1 119408952 119409168 -123255185 + MER58A DNA MER1_type 12 224 0 570 215 55 75 chr1 119409169 119409369 -123254984 - MER112 DNA MER1_type -57 203 8 469 304 14 0 chr1 119410807 119410955 -123253398 - LTR16C LTR ERVL -2 489 340 2914 86 11 9 chr1 119411192 119411625 -123252728 + LTR7 LTR ERV1 1 434 -16 342 0 0 0 chr1 119411866 119411904 -123252449 + (CA)n Simple_repeat Simple_repeat 2 39 0 634 271 131 37 chr1 119411914 119411936 -123252417 - L3 LINE CR1 -12 1565 1546 2753 155 27 29 chr1 119411936 119412496 -123251857 - MER89 LTR ERV1 0 559 1 634 271 131 37 chr1 119412496 119412717 -123251636 - L3 LINE CR1 -31 1546 1299 310 317 99 28 chr1 119412737 119412879 -123251474 + MIR SINE MIR 2 153 -109 2061 101 67 25 chr1 119413126 119413483 -123250870 + THE1C LTR MaLR 4 375 0 2010 142 0 7 chr1 119414024 119414319 -123250034 + AluSx SINE Alu 1 293 -19 227 224 35 0 chr1 119414747 119414805 -123249548 - MIR SINE MIR -131 77 18 1016 258 114 40 chr1 119415597 119416019 -123248334 - MLT1C LTR MaLR -9 458 6 405 323 70 0 chr1 119416027 119416185 -123248168 - MIR SINE MIR -47 215 47 209 333 136 13 chr1 119416282 119416510 -123247843 - L2 LINE L2 -435 2879 2624 550 287 33 6 chr1 119416961 119417142 -123247211 + LTR67 LTR ERVL 372 557 0 247 297 115 73 chr1 119417184 119417584 -123246769 - L2 LINE L2 -966 2348 1919 1964 165 30 0 chr1 119417584 119417887 -123246466 + AluJb SINE Alu 1 312 0 247 297 115 73 chr1 119417887 119418008 -123246345 - L2 LINE L2 -1395 1919 1805 702 178 0 0 chr1 119418338 119418456 -123245897 - FLAM_C SINE Alu -15 118 1 1883 185 25 3 chr1 119418646 119419003 -123245350 + MLT1A1 LTR MaLR 1 365 0 1925 65 0 4 chr1 119419046 119419275 -123245078 - AluY SINE Alu -2 309 82 199 211 13 13 chr1 119419277 119419353 -123245000 + CT-rich Low_complexity Low_complexity 2 77 0 1962 203 67 9 chr1 119419459 119419922 -123244431 - Charlie4a DNA MER1_type -2 506 17 2196 111 28 0 chr1 119420068 119420356 -123243997 - AluSx SINE Alu -16 296 1 282 246 0 0 chr1 119421867 119421924 -123242429 - MIR SINE MIR -27 235 179 957 157 54 0 chr1 119421963 119422110 -123242243 + FRAM SINE Alu 1 155 -21 886 280 129 27 chr1 119422113 119422473 -123241880 + L2 LINE L2 2703 3137 -176 2372 95 3 0 chr1 119422473 119422769 -123241584 - AluSx SINE Alu -15 297 1 886 280 129 27 chr1 119422769 119422966 -123241387 + L2 LINE L2 3137 3313 0 417 306 119 0 chr1 119422971 119423131 -123241222 - MIR SINE MIR -77 185 7 411 259 140 0 chr1 119423215 119423358 -123240995 - MER103 DNA DNA -1 165 3 23 0 0 0 chr1 119424936 119424959 -123239394 + AT_rich Low_complexity Low_complexity 1 23 0 363 211 29 48 chr1 119427736 119427840 -123236513 - MIR SINE MIR -76 132 31 311 287 113 0 chr1 119427939 119428054 -123236299 + MIR3 SINE MIR 60 187 -21 241 229 171 0 chr1 119428152 119428222 -123236131 + MER96 DNA MER1_type? 4 85 -90 821 272 65 0 chr1 119428813 119429045 -123235308 - MIR SINE MIR -3 259 13 299 373 42 0 chr1 119429072 119429190 -123235163 + L2 LINE L2 3186 3308 -5 213 39 0 0 chr1 119429192 119429218 -123235135 + (TG)n Simple_repeat Simple_repeat 1 26 0 470 243 9 0 chr1 119429238 119429345 -123235008 + MIR SINE MIR 31 138 -124 2825 7 0 0 chr1 119431299 119431598 -123232755 - AluYa5 SINE Alu -12 299 1 207 0 0 0 chr1 119431662 119431685 -123232668 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 527 53 40 0 chr1 119432044 119432120 -123232233 - MADE1 DNA Mariner 0 80 2 2771 36 0 0 chr1 119432172 119432477 -123231876 + AluY SINE Alu 1 305 -6 1630 174 25 4 chr1 119432483 119432759 -123231594 - AluJo SINE Alu -30 282 1 2296 103 0 26 chr1 119433118 119433430 -123230923 + AluSx SINE Alu 1 304 -8 527 229 159 12 chr1 119433522 119433692 -123230661 + L2 LINE L2 3118 3312 -1 184 275 14 43 chr1 119434255 119434285 -123230068 + MIR3 SINE MIR 127 156 -52 2420 74 3 0 chr1 119434285 119434584 -123229769 - AluY SINE Alu -11 300 1 184 275 14 43 chr1 119434584 119434622 -123229731 + MIR3 SINE MIR 156 193 -15 2211 123 0 3 chr1 119435296 119435597 -123228756 - AluSx SINE Alu -12 300 1 400 267 22 44 chr1 119436219 119436354 -123227999 + MIR SINE MIR 57 188 -74 2300 105 20 3 chr1 119436373 119436679 -123227674 + AluSx SINE Alu 2 312 0 1968 142 10 0 chr1 119437420 119437708 -123226645 - AluJb SINE Alu -21 291 1 255 283 0 81 chr1 119437714 119437813 -123226540 - MIR SINE MIR -67 195 105 1413 123 0 0 chr1 119437834 119438021 -123226332 - AluSq SINE Alu -22 291 105 684 229 165 23 chr1 119438558 119438783 -123225570 + MIR SINE MIR 7 257 -5 313 263 149 77 chr1 119438847 119439041 -123225312 - MIR SINE MIR 0 262 55 257 296 37 0 chr1 119439376 119439457 -123224896 - MIR3 SINE MIR -21 187 104 220 358 83 0 chr1 119439514 119439634 -123224719 - MIR3 SINE MIR -76 132 3 298 282 111 17 chr1 119439813 119439930 -123224423 + L2 LINE L2 3143 3270 -2 474 224 264 15 chr1 119439940 119440141 -123224212 - MER112 DNA MER1_type -1 255 5 181 271 128 53 chr1 119441795 119441928 -123222425 + MIR SINE MIR 94 236 -26 * 513 293 20 0 chr1 119441907 119442054 -123222299 - MIR SINE MIR -49 213 64 469 297 48 43 chr1 119442761 119442970 -123221383 - MIR SINE MIR -33 229 20 248 278 0 0 chr1 119443075 119443129 -123221224 + L2 LINE L2 3205 3258 -14 360 335 98 10 chr1 119443734 119443928 -123220425 - MIR SINE MIR -5 257 47 312 306 165 0 chr1 119444896 119445066 -123219287 - MIR3 SINE MIR -7 201 4 330 317 128 18 chr1 119445205 119445369 -123218984 - L2 LINE L2 0 3313 3132 350 291 19 0 chr1 119446364 119446467 -123217886 - MIR SINE MIR -14 248 144 440 262 14 64 chr1 119446467 119446674 -123217679 - MIR SINE MIR -53 209 15 1935 138 55 7 chr1 119451043 119451334 -123213019 - AluSg SINE Alu -5 305 1 332 278 26 0 chr1 119451962 119452077 -123212276 + L2 LINE L2 2923 3040 -232 373 271 49 0 chr1 119452877 119452999 -123211354 + L2 LINE L2 2921 3048 -224 583 296 140 16 chr1 119453108 119453415 -123210938 - L2 LINE L2 -2 3311 2967 207 293 0 35 chr1 119453555 119453613 -123210740 + L2 LINE L2 3216 3271 -1 197 292 73 52 chr1 119453792 119453888 -123210465 - L2 LINE L2 -7 3265 3168 213 291 209 0 chr1 119455611 119455697 -123208656 - L2 LINE L2 -10 3303 3200 1386 234 82 11 chr1 119456278 119456642 -123207711 + MLT1B LTR MaLR 1 390 0 1746 160 114 2 chr1 119457244 119457638 -123206715 - MLT1D LTR MaLR 0 505 7 1488 122 10 5 chr1 119458392 119458597 -123205756 + AluSq SINE Alu 1 206 -107 276 86 0 0 chr1 119458597 119458656 -123205697 + AluSq SINE Alu 248 306 0 374 242 158 24 chr1 119458670 119458835 -123205518 + MIR SINE MIR 32 218 -44 1372 248 78 78 chr1 119459135 119459728 -123204625 + MLT1E LTR MaLR 1 593 0 195 321 71 0 chr1 119459928 119460040 -123204313 - L2 LINE L2 -214 3058 2939 694 277 19 21 chr1 119460333 119460573 -123203780 + MIR SINE MIR 1 236 -26 352 316 22 15 chr1 119460909 119461045 -123203308 - MIR SINE MIR -60 202 66 269 244 58 12 chr1 119461976 119462062 -123202291 + MIR SINE MIR 63 152 -110 1827 161 43 60 chr1 119462062 119462251 -123202102 + MLT1B LTR MaLR 1 192 -198 2056 81 0 37 chr1 119462251 119462603 -123201750 + AluSc SINE Alu 18 359 0 1827 161 43 60 chr1 119462603 119462809 -123201544 + MLT1B LTR MaLR 192 390 0 271 271 28 85 chr1 119462962 119463139 -123201214 + MIR SINE MIR 46 212 -50 2063 125 31 0 chr1 119463473 119463761 -123200592 - AluSx SINE Alu -15 297 1 212 336 58 10 chr1 119464379 119464483 -123199870 + L2 LINE L2 3162 3270 -2 241 303 131 30 chr1 119464767 119464866 -123199487 - L2 LINE L2 -18 3254 3146 245 176 39 0 chr1 119466343 119466394 -123197959 - Charlie8 DNA MER1_type -2248 169 117 403 259 1 25 chr1 119466400 119466525 -123197828 - L1MC5 LINE L1 0 8042 7806 336 301 89 0 chr1 119466895 119467041 -123197312 - L2 LINE L2 0 3313 3155 294 29 0 0 chr1 119467043 119467078 -123197275 + (TG)n Simple_repeat Simple_repeat 2 36 0 2044 165 107 2 chr1 119467091 119467492 -123196861 + Tigger4(Zombi) DNA MER2_type 1 443 -2288 465 111 37 0 chr1 119467489 119467512 -123196841 + Tigger4(Zombi) DNA MER2_type 2646 2667 -64 * 207 0 0 0 chr1 119467512 119467535 -123196818 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 465 111 37 0 chr1 119467535 119467592 -123196761 + Tigger4(Zombi) DNA MER2_type 2667 2729 -2 354 45 0 0 chr1 119467599 119467643 -123196710 + (TG)n Simple_repeat Simple_repeat 2 45 0 409 212 40 10 chr1 119467803 119467902 -123196451 + MLT1K LTR MaLR 487 588 0 2701 88 3 0 chr1 119468447 119468810 -123195543 + THE1B LTR MaLR 1 364 0 287 255 123 9 chr1 119468833 119468939 -123195414 + MIR SINE MIR 99 216 -46 1931 176 0 0 chr1 119469018 119469319 -123195034 - AluJb SINE Alu -11 301 1 369 0 0 0 chr1 119469358 119469399 -123194954 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 2357 75 10 0 chr1 119469400 119469694 -123194659 - AluY SINE Alu -14 297 1 201 275 138 0 chr1 119469890 119469970 -123194383 - MIR SINE MIR -71 191 101 2584 65 0 3 chr1 119470332 119470640 -123193713 + AluY SINE Alu 1 307 -4 243 279 35 12 chr1 119470840 119470926 -123193427 + L2 LINE L2 3184 3271 -1 393 260 130 14 chr1 119471737 119471883 -123192470 + MIR SINE MIR 20 182 -80 1650 179 65 135 chr1 119472664 119473218 -123191135 + MLT2B1 LTR ERVL 1 515 0 249 293 103 45 chr1 119473927 119474117 -123190236 + MIR SINE MIR 16 212 -50 414 227 213 0 chr1 119474249 119474390 -123189963 - MER5A DNA MER1_type 0 189 19 295 195 27 0 chr1 119474540 119474666 -123189687 + GA-rich Low_complexity Low_complexity 1 129 0 390 258 65 0 chr1 119476667 119476791 -123187562 + L2 LINE L2 2458 2589 -725 553 267 57 0 chr1 119477526 119477702 -123186651 + MIR SINE MIR 74 259 -3 371 250 125 0 chr1 119478315 119478427 -123185926 + MIR SINE MIR 72 197 -65 964 178 46 10 chr1 119478432 119478629 -123185724 + MER65A LTR ERV1 3 206 -239 354 237 21 0 chr1 119478772 119478865 -123185488 + L2 LINE L2 2475 2569 -745 180 271 0 68 chr1 119478996 119479055 -123185298 + MIR SINE MIR 160 214 -48 447 52 0 0 chr1 119479225 119479283 -123185070 + (TG)n Simple_repeat Simple_repeat 1 58 0 422 315 85 15 chr1 119479535 119479735 -123184618 - MIR SINE MIR -43 219 6 187 333 59 10 chr1 119479892 119479994 -123184359 + MIR SINE MIR 56 162 -100 392 321 42 26 chr1 119480726 119480916 -123183437 + MIR SINE MIR 20 212 -50 237 200 22 0 chr1 119481615 119481660 -123182693 + L2 LINE L2 3156 3201 -71 203 88 29 0 chr1 119481695 119481729 -123182624 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 808 270 53 26 chr1 119481850 119482154 -123182199 + L1ME1 LINE L1 5865 6334 0 205 234 31 31 chr1 119482303 119482367 -123181986 + L2 LINE L2 3209 3272 0 473 287 103 5 chr1 119483368 119483563 -123180790 + MIR SINE MIR 37 250 -12 470 310 87 18 chr1 119484742 119484971 -123179382 + MIR SINE MIR 10 254 -8 387 311 31 4 chr1 119485323 119485480 -123178873 - MIR SINE MIR -61 147 30 313 225 22 0 chr1 119485538 119485627 -123178726 + (CA)n Simple_repeat Simple_repeat 1 91 0 326 328 17 8 chr1 119487034 119487153 -123177200 + MIR SINE MIR 22 141 -67 748 250 110 9 chr1 119487466 119487694 -123176659 + MIR SINE MIR 7 257 -5 217 297 160 38 chr1 119487869 119488132 -123176221 + L2 LINE L2 2473 2767 -547 407 213 13 1 chr1 119488489 119488574 -123175779 + MIR SINE MIR 73 156 -61 231 265 0 29 chr1 119488610 119488678 -123175675 + L2 LINE L2 3201 3266 -6 235 276 79 0 chr1 119490227 119490303 -123174050 + MIR SINE MIR 36 117 -145 1120 223 24 12 chr1 119490304 119490551 -123173802 + MIR SINE MIR 2 251 -11 277 161 62 62 chr1 119491849 119491930 -123172423 - L2 LINE L2 0 3272 3192 2005 237 32 15 chr1 119492004 119492535 -123171818 - L1ME1 LINE L1 -5 6161 5622 680 272 38 9 chr1 119493855 119494068 -123170285 - MIR SINE MIR -1 261 43 186 216 147 86 chr1 119494121 119494237 -123170116 - L2 LINE L2 -201 3071 2949 258 105 0 0 chr1 119494542 119494580 -123169773 + (CAT)n Simple_repeat Simple_repeat 2 39 0 236 339 45 9 chr1 119495493 119495605 -123168748 + MIR SINE MIR 133 248 -14 253 267 67 50 chr1 119495978 119496098 -123168255 + MIR SINE MIR 79 200 -62 194 312 18 92 chr1 119496147 119496256 -123168097 - L3 LINE CR1 -9 1568 1468 214 192 58 19 chr1 119496467 119496519 -123167834 - MIR SINE MIR -87 121 68 342 237 66 72 chr1 119497328 119497480 -123166873 + MIR SINE MIR 1 147 -61 357 328 15 0 chr1 119499643 119499777 -123164576 + L2 LINE L2 2662 2797 -517 1403 160 76 30 chr1 119499836 119500099 -123164254 + AluJo SINE Alu 21 295 -17 235 291 13 38 chr1 119500121 119500200 -123164153 + MLT1J LTR MaLR 59 135 -376 426 190 83 35 chr1 119500224 119500344 -123164009 + MLT1H LTR MaLR 274 549 0 368 336 0 0 chr1 119501245 119501364 -123162989 - MIR3 SINE MIR -9 199 81 394 313 141 6 chr1 119501880 119502043 -123162310 + MIR3 SINE MIR 19 203 -5 2347 116 0 0 chr1 119502068 119502378 -123161975 + AluSx SINE Alu 1 310 -2 374 320 0 10 chr1 119503679 119503782 -123160571 + MIR SINE MIR 12 113 -149 223 385 47 24 chr1 119504188 119504357 -123159996 - L3 LINE CR1 -1403 174 2 1048 265 78 12 chr1 119504857 119505189 -123159164 + L2 LINE L2 2053 2406 -908 2085 257 162 11 chr1 119505401 119505420 -123158933 + L2 LINE L2 2328 2343 -970 1833 137 0 8 chr1 119505420 119505683 -123158670 - AluSx SINE Alu -51 261 1 2085 257 162 11 chr1 119505683 119506524 -123157829 + L2 LINE L2 2343 3308 -5 860 257 106 0 chr1 119506498 119506724 -123157629 - MIR SINE MIR -12 250 1 * 188 250 25 0 chr1 119506986 119507026 -123157327 - L2 LINE L2 -21 3251 3211 * 498 260 17 85 chr1 119506994 119507171 -123157182 - MIR SINE MIR -24 238 74 590 201 208 0 chr1 119508192 119508346 -123156007 - MER53 DNA DNA -1 188 3 265 328 112 24 chr1 119508644 119508769 -123155584 + MIR SINE MIR 126 261 -1 923 226 71 50 chr1 119509618 119509901 -123154452 - MER115 DNA AcHobo -14 679 391 2395 197 60 17 chr1 119509902 119510385 -123153968 - MLT1D LTR MaLR 0 505 2 223 186 24 31 chr1 119510936 119511065 -123153288 + GA-rich Low_complexity Low_complexity 1 128 0 217 279 89 0 chr1 119512040 119512119 -123152234 + L2 LINE L2 3147 3232 -40 408 327 140 33 chr1 119512347 119513095 -123151258 - L2 LINE L2 -1 3312 2485 637 286 144 61 chr1 119513202 119513417 -123150936 - MLT1L LTR MaLR -98 517 321 1733 139 0 96 chr1 119513417 119513740 -123150613 - AluJb SINE Alu -8 294 3 637 286 144 61 chr1 119513740 119513996 -123150357 - MLT1L LTR MaLR -294 321 7 354 311 33 67 chr1 119514190 119514370 -123149983 - MER5A DNA MER1_type 0 189 16 318 297 34 25 chr1 119514357 119514475 -123149878 - MIR3 SINE MIR -38 170 52 * 408 276 48 66 chr1 119515430 119515658 -123148695 + MIR SINE MIR 39 262 0 327 227 15 0 chr1 119516338 119516404 -123147949 + MIR SINE MIR 90 156 -106 1141 258 115 12 chr1 119517116 119517515 -123146838 - LTR16A LTR ERVL -1 449 10 222 246 0 18 chr1 119517636 119517693 -123146660 - MIR3 SINE MIR -11 197 142 364 240 0 0 chr1 119518082 119518157 -123146196 + MIR SINE MIR 182 256 -6 487 246 72 7 chr1 119518231 119518369 -123145984 + L2 LINE L2 3164 3310 -3 326 320 0 0 chr1 119518500 119518600 -123145753 + (TGGA)n Simple_repeat Simple_repeat 1 100 0 2244 113 0 13 chr1 119519173 119519474 -123144879 + AluSx SINE Alu 5 301 -11 269 249 39 77 chr1 119519634 119519815 -123144538 + MER20B DNA MER1_type 6 179 -604 221 217 43 29 chr1 119520696 119520765 -123143588 - MIR3 SINE MIR -127 81 12 287 307 243 24 chr1 119521667 119522091 -123142262 + L2 LINE L2 2448 2964 -350 484 310 75 5 chr1 119522189 119522389 -123141964 + MIR SINE MIR 29 242 -20 313 315 82 31 chr1 119522573 119522830 -123141523 - LTR16C LTR ERVL -100 391 122 237 125 0 0 chr1 119523046 119523077 -123141276 + (TCCC)n Simple_repeat Simple_repeat 4 37 -6 2182 103 3 3 chr1 119523077 119523369 -123140984 - AluSg SINE Alu -18 292 1 237 125 0 0 chr1 119523369 119523377 -123140976 + (TCCC)n Simple_repeat Simple_repeat 36 43 0 2163 80 3 16 chr1 119523628 119523978 -123140375 - MER4A LTR ERV1 0 664 261 613 130 0 20 chr1 119523978 119524078 -123140275 - MER4A LTR ERV1 -566 98 1 208 317 77 39 chr1 119524491 119524595 -123139758 + MIR SINE MIR 40 147 -61 281 247 27 14 chr1 119526168 119526241 -123138112 + MIR SINE MIR 2 75 -187 282 314 36 57 chr1 119526573 119526713 -123137640 + MIR SINE MIR 107 243 -19 1781 195 0 0 chr1 119527485 119527782 -123136571 - AluJb SINE Alu -15 297 1 712 283 55 62 chr1 119527980 119528383 -123135970 - L1M4 LINE L1 -743 5403 5004 2018 129 31 7 chr1 119528725 119529012 -123135341 - AluSg SINE Alu -16 294 1 386 306 123 6 chr1 119529389 119529565 -123134788 + MIR3 SINE MIR 4 201 -7 378 219 8 84 chr1 119529817 119529936 -123134417 + MIR3 SINE MIR 89 198 -10 524 285 191 0 chr1 119530158 119530446 -123133907 - L1ME4a LINE L1 -1 6120 5778 428 259 65 53 chr1 119530635 119530805 -123133548 - MIR SINE MIR -69 193 22 425 293 50 29 chr1 119531525 119531665 -123132688 + MIR3 SINE MIR 17 159 -49 830 239 38 64 chr1 119531746 119532010 -123132343 + MIR SINE MIR 1 257 -5 595 325 39 21 chr1 119532695 119532981 -123131372 + L1ME LINE L1 5532 5822 -299 642 236 28 0 chr1 119533211 119533355 -123130998 - MER45A DNA AcHobo 0 178 31 218 262 60 24 chr1 119533607 119533691 -123130662 - L2 LINE L2 -1 3312 3226 205 292 46 0 chr1 119533957 119534022 -123130331 - L3 LINE CR1 -607 970 903 334 336 16 16 chr1 119534065 119534193 -123130160 - L3 LINE CR1 -869 708 581 732 202 0 0 chr1 119534763 119534887 -123129466 - FLAM_A SINE Alu -9 124 1 1342 266 117 40 chr1 119534910 119535719 -123128634 - HAL1b LINE L1 -65 1283 412 1178 266 143 47 chr1 119535719 119536052 -123128301 + L2 LINE L2 2304 2604 -709 1098 135 0 0 chr1 119536052 119536230 -123128123 + (CCTAT)n Simple_repeat Simple_repeat 3 180 0 1178 266 143 47 chr1 119536230 119536424 -123127929 + L2 LINE L2 2604 2778 -535 360 0 0 0 chr1 119536424 119536464 -123127889 + (CTCA)n Simple_repeat Simple_repeat 3 42 0 1178 266 143 47 chr1 119536464 119536864 -123127489 + L2 LINE L2 2778 3313 0 621 327 63 62 chr1 119536876 119537368 -123126985 - HAL1b LINE L1 -942 1476 3 2904 207 46 77 chr1 119537382 119538318 -123126035 - L1ME1 LINE L1 -1 6165 5225 329 157 0 0 chr1 119538318 119538369 -123125984 + MADE1 DNA Mariner 30 80 0 2904 207 46 77 chr1 119538369 119538623 -123125730 - L1ME1 LINE L1 -941 5225 4965 451 279 102 0 chr1 119539006 119539153 -123125200 - MIR SINE MIR -55 207 46 451 231 238 9 chr1 119540418 119540602 -123123751 + MIR SINE MIR 34 251 -11 198 0 0 0 chr1 119540613 119540635 -123123718 + (CAT)n Simple_repeat Simple_repeat 3 24 0 413 325 90 10 chr1 119540661 119540861 -123123492 + MIR SINE MIR 35 250 -12 857 266 153 31 chr1 119540989 119541504 -123122849 - MLT1K LTR MaLR -9 579 2 563 270 75 11 chr1 119541863 119542037 -123122316 + MIR3 SINE MIR 21 205 -3 508 290 114 52 chr1 119542328 119542556 -123121797 - MIR SINE MIR -31 231 1 785 257 138 25 chr1 119542606 119542882 -123121471 - L2 LINE L2 -1 3312 3006 593 272 66 24 chr1 119542904 119543112 -123121241 + MIR SINE MIR 41 261 -1 240 213 64 75 chr1 119543211 119543305 -123121048 + MIR3 SINE MIR 11 103 -105 340 296 69 8 chr1 119543407 119543537 -123120816 + MIR SINE MIR 57 192 -41 521 256 100 17 chr1 119544102 119544282 -123120071 + MIR3 SINE MIR 7 201 -7 1420 272 100 22 chr1 119545244 119545993 -123118360 + L2 LINE L2 2436 3251 -62 566 298 75 0 chr1 119546155 119546316 -123118037 + MIR3 SINE MIR 31 203 -5 367 272 105 9 chr1 119546369 119546483 -123117870 + MIR SINE MIR 21 145 -63 594 249 100 26 chr1 119546581 119546810 -123117543 + MIR SINE MIR 17 262 0 2095 161 20 164 chr1 119547335 119547982 -123116371 - MLT2B3 LTR ERVL 0 554 1 666 274 38 11 chr1 119547994 119548180 -123116173 + MIR SINE MIR 44 234 -28 1890 81 0 4 chr1 119548980 119549216 -123115137 + AluSq SINE Alu 77 311 -2 465 228 148 53 chr1 119549303 119549421 -123114932 + MIR SINE MIR 49 193 -69 2249 166 52 5 chr1 119549421 119549825 -123114528 - MSTB LTR MaLR 0 426 4 465 228 148 53 chr1 119549825 119549895 -123114458 + MIR SINE MIR 193 255 -7 401 314 71 43 chr1 119549872 119550082 -123114271 - MIR SINE MIR -19 243 28 * 569 191 127 25 chr1 119551331 119551488 -123112865 - MIR SINE MIR -70 192 20 327 25 0 0 chr1 119552488 119552528 -123111825 + (TG)n Simple_repeat Simple_repeat 2 41 0 327 104 0 0 chr1 119553766 119553814 -123110539 + (TA)n Simple_repeat Simple_repeat 1 48 0 314 121 0 17 chr1 119555789 119555847 -123108506 + (TA)n Simple_repeat Simple_repeat 1 57 0 200 242 16 16 chr1 119556927 119556989 -123107364 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 315 0 0 0 chr1 119561250 119561267 -123103086 + (TG)n Simple_repeat Simple_repeat 1 52 0 315 0 0 0 chr1 119561267 119561302 -123103051 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr1 119566780 119566815 -123097538 + GC_rich Low_complexity Low_complexity 1 35 0 205 103 26 26 chr1 119566867 119566906 -123097447 + (CCGCG)n Simple_repeat Simple_repeat 4 42 0 34 0 0 0 chr1 119566932 119566966 -123097387 + GC_rich Low_complexity Low_complexity 1 34 0 278 238 167 0 chr1 119568246 119568330 -123096023 + MIR SINE MIR 92 146 -62 581 332 66 13 chr1 119568807 119569033 -123095320 - MIR SINE MIR -24 238 1 438 212 58 58 chr1 119569313 119569450 -123094903 + MIR SINE MIR 59 195 -67 459 328 97 15 chr1 119569929 119570124 -123094229 - MIR SINE MIR -39 223 13 203 273 121 0 chr1 119570377 119570443 -123093910 + MIR3 SINE MIR 82 155 -53 477 0 0 0 chr1 119570490 119570543 -123093810 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 1700 155 46 35 chr1 119570928 119571212 -123093141 + AluJo SINE Alu 11 297 -15 1716 199 3 6 chr1 119571212 119571523 -123092830 + AluJb SINE Alu 1 310 -2 1282 154 19 0 chr1 119571665 119571879 -123092474 - Tigger3(Golem) DNA MER2_type -1 3028 2811 512 338 99 36 chr1 119571882 119572275 -123092078 + L2 LINE L2 2423 2840 -474 526 303 52 11 chr1 119572327 119572540 -123091813 + MIR SINE MIR 10 224 -38 316 331 77 40 chr1 119572607 119572906 -123091447 + L2 LINE L2 2950 3259 -13 493 267 9 9 chr1 119573213 119573329 -123091024 - MIR SINE MIR -146 116 1 536 317 105 41 chr1 119573404 119573823 -123090530 - L3 LINE CR1 -94 1483 1038 410 250 89 24 chr1 119574037 119574161 -123090192 + MIR3 SINE MIR 54 185 -23 452 259 43 25 chr1 119574195 119574357 -123089996 - MIR SINE MIR -61 201 34 216 318 116 31 chr1 119574486 119574615 -123089738 + L3b LINE CR1 1238 1377 -206 309 342 40 27 chr1 119576106 119576255 -123088098 - MIR SINE MIR -97 165 15 193 219 0 0 chr1 119576284 119576325 -123088028 + L2 LINE L2 3261 3301 -12 300 239 159 0 chr1 119576624 119576712 -123087641 + L2 LINE L2 3208 3309 -4 294 297 94 65 chr1 119576720 119577524 -123086829 - L2 LINE L2 -338 2976 2149 1743 138 25 32 chr1 119577531 119577813 -123086540 + AluJo SINE Alu 1 280 -32 941 277 184 42 chr1 119578104 119578768 -123085585 + L2 LINE L2 2302 3047 -266 552 53 0 0 chr1 119579506 119579582 -123084771 + (GA)n Simple_repeat Simple_repeat 1 76 0 180 77 0 0 chr1 119580009 119580035 -123084318 + (CAGGG)n Simple_repeat Simple_repeat 2 27 0 6947 236 46 22 chr1 119580856 119583034 -123081319 + L1ME1 LINE L1 3013 5241 -905 866 165 0 0 chr1 119583040 119583167 -123081186 - FLAM_C SINE Alu -16 127 1 2849 200 70 56 chr1 119583200 119584095 -123080258 + L1ME1 LINE L1 5254 6161 -5 256 295 155 30 chr1 119584448 119584648 -123079705 + L2 LINE L2 2445 2669 -645 2471 275 67 26 chr1 119584710 119586080 -123078273 + L1MC4a LINE L1 4741 5394 -752 183 80 0 0 chr1 119586412 119586437 -123077916 + (ATG)n Simple_repeat Simple_repeat 2 26 0 418 256 73 15 chr1 119586444 119586581 -123077772 - MIR SINE MIR -14 248 104 656 311 36 5 chr1 119586619 119586838 -123077515 + MIR SINE MIR 32 257 -5 220 216 0 0 chr1 119587071 119587108 -123077245 + L2 LINE L2 3226 3262 -10 641 142 9 0 chr1 119587218 119587324 -123077029 + FRAM SINE Alu 63 169 -7 321 236 21 129 chr1 119587987 119588127 -123076226 + L2 LINE L2 3142 3266 -6 528 279 14 14 chr1 119588546 119588686 -123075667 + MER5B DNA MER1_type 2 141 -37 251 340 178 11 chr1 119589010 119589195 -123075158 + L2 LINE L2 3054 3269 -3 2599 64 0 16 chr1 119589482 119589793 -123074560 - AluSp SINE Alu -7 306 1 327 210 32 0 chr1 119589922 119589984 -123074369 + L2 LINE L2 3194 3257 -15 215 361 105 8 chr1 119590008 119590141 -123074212 + MIR SINE MIR 117 262 0 856 268 315 40 chr1 119591204 119592284 -123072069 - L2 LINE L2 -419 2895 1519 2300 121 0 0 chr1 119592285 119592592 -123071761 - AluSq SINE Alu -6 307 1 248 268 49 37 chr1 119593600 119593682 -123070671 + MIR3 SINE MIR 77 159 -49 337 308 267 0 chr1 119595285 119595480 -123068873 + L3 LINE CR1 1119 1365 -212 197 211 0 0 chr1 119595509 119595547 -123068806 + MIR SINE MIR 1 38 -224 434 330 33 41 chr1 119595632 119595902 -123068451 + MER102b DNA MER1_type 73 340 -1 454 274 8 8 chr1 119595916 119596033 -123068320 + MIR SINE MIR 47 163 -99 1549 162 26 68 chr1 119596338 119596455 -123067898 + AluJb SINE Alu 1 121 -191 195 69 0 0 chr1 119596455 119596484 -123067869 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1549 162 26 68 chr1 119596484 119596675 -123067678 + AluJb SINE Alu 121 296 -16 205 29 29 29 chr1 119596689 119596724 -123067629 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 943 233 48 12 chr1 119598617 119598866 -123065487 + MIR SINE MIR 5 262 0 188 280 30 70 chr1 119599276 119599376 -123064977 - L2 LINE L2 -321 2951 2856 418 330 91 30 chr1 119599568 119599999 -123064354 - L2 LINE L2 -867 2447 1991 2322 114 0 0 chr1 119600264 119600572 -123063781 + AluSg SINE Alu 3 310 0 375 294 33 81 chr1 119600831 119601042 -123063311 + MIR SINE MIR 61 261 -1 303 49 0 0 chr1 119601236 119601277 -123063076 + (TG)n Simple_repeat Simple_repeat 2 42 0 2203 119 14 0 chr1 119601730 119602025 -123062328 - AluSx SINE Alu -13 299 1 223 229 0 0 chr1 119602748 119602796 -123061557 + C-rich Low_complexity Low_complexity 1 48 0 1831 113 0 79 chr1 119603980 119604272 -123060081 + AluSx SINE Alu 29 297 -15 262 295 13 0 chr1 119604258 119604346 -123060007 + MIR SINE MIR 137 225 -37 613 226 174 13 chr1 119604729 119604884 -123059469 - MER5A DNA MER1_type -1 188 9 180 0 0 0 chr1 119605117 119605137 -123059216 + (TTTTTA)n Simple_repeat Simple_repeat 5 24 0 474 322 79 69 chr1 119607531 119608129 -123056224 - L2 LINE L2 -2 3270 2670 187 326 37 62 chr1 119608153 119608395 -123055958 - L2 LINE L2 -753 2561 2326 400 311 221 19 chr1 119608952 119609422 -123054931 - L2 LINE L2 -1006 2308 1744 355 295 68 18 chr1 119609885 119610039 -123054314 + MIR3 SINE MIR 2 160 -67 2124 121 3 0 chr1 119611449 119611768 -123052585 + AluSx SINE Alu 1 320 0 351 0 0 0 chr1 119612418 119612457 -123051896 + (TG)n Simple_repeat Simple_repeat 2 40 0 204 217 0 0 chr1 119612467 119612513 -123051840 + (TA)n Simple_repeat Simple_repeat 2 47 0 197 310 17 0 chr1 119612571 119612629 -123051724 + L2 LINE L2 3250 3308 -5 266 89 44 0 chr1 119612947 119612992 -123051361 + GA-rich Low_complexity Low_complexity 3 49 0 278 374 32 0 chr1 119614291 119614414 -123049939 + MIR SINE MIR 69 195 -67 237 229 0 0 chr1 119614602 119614650 -123049703 + (TATG)n Simple_repeat Simple_repeat 3 50 0 329 293 80 27 chr1 119615944 119616094 -123048259 - MIR3 SINE MIR -10 198 41 2220 121 0 7 chr1 119616508 119616814 -123047539 - AluSg SINE Alu -6 304 1 363 309 8 40 chr1 119616851 119616977 -123047376 - MIR3 SINE MIR -15 193 72 2999 63 24 31 chr1 119619144 119619569 -123044784 + L1PA6 LINE L1 5733 6154 0 210 71 0 0 chr1 119619969 119619997 -123044356 + (GA)n Simple_repeat Simple_repeat 1 28 0 294 263 92 0 chr1 119620295 119620371 -123043982 + L2 LINE L2 3231 3313 0 * 314 356 0 0 chr1 119620341 119620442 -123043911 + L2 LINE L2 3213 3313 0 2447 55 0 19 chr1 119621293 119621604 -123042749 + AluY SINE Alu 1 305 -6 24 0 0 0 chr1 119623373 119623397 -123040956 + AT_rich Low_complexity Low_complexity 1 24 0 3739 245 106 18 chr1 119624091 119625448 -123038905 - L2 LINE L2 -9 3304 1816 218 213 0 21 chr1 119625444 119625491 -123038862 - L2 LINE L2 -64 3208 3163 * 406 241 82 41 chr1 119625555 119625725 -123038628 + MER104 DNA Tc2 1 177 -3 670 335 55 30 chr1 119625891 119626291 -123038062 - L2 LINE L2 -414 2900 2491 402 315 36 19 chr1 119629084 119629297 -123035056 + MIR SINE MIR 8 262 0 887 227 88 5 chr1 119629444 119629638 -123034715 - MIR SINE MIR -46 216 7 182 302 170 19 chr1 119629673 119629779 -123034574 - L2 LINE L2 -3 3310 3189 304 304 156 21 chr1 119634086 119634329 -123030024 - L1M2 LINE L1 -5940 909 634 26 0 0 0 chr1 119634792 119634818 -123029535 + GC_rich Low_complexity Low_complexity 1 26 0 236 358 41 24 chr1 119635714 119635837 -123028516 + L2 LINE L2 3144 3268 -4 443 299 26 8 chr1 119636585 119636702 -123027651 - MIR3 SINE MIR -85 123 5 212 186 86 57 chr1 119636973 119637043 -123027310 - MIR SINE MIR -45 217 146 5772 67 23 3 chr1 119637374 119638391 -123025962 - L1PA7 LINE L1 -609 5545 4512 4824 58 8 0 chr1 119638391 119638991 -123025362 + L1PA7 LINE L1 5544 6154 0 344 252 81 27 chr1 119638992 119639103 -123025250 - L2 LINE L2 -26 3287 3171 1067 239 43 80 chr1 119639180 119639619 -123024734 + L2 LINE L2 2868 3290 -23 306 0 0 0 chr1 119639672 119639706 -123024647 + (TG)n Simple_repeat Simple_repeat 1 34 0 506 337 165 14 chr1 119639850 119640263 -123024090 + L2 LINE L2 2260 2734 -580 273 302 85 58 chr1 119640311 119640500 -123023853 + L2 LINE L2 2877 3070 -202 620 235 63 99 chr1 119640669 119640890 -123023463 - MIR SINE MIR -2 260 48 2129 139 0 3 chr1 119641321 119641631 -123022722 + AluSx SINE Alu 1 309 -3 4174 153 32 29 chr1 119643673 119644401 -123019952 - MER44D DNA MER2_type -3 602 1 393 325 50 6 chr1 119644416 119644576 -123019777 + MIR SINE MIR 86 252 -10 1964 143 20 7 chr1 119644841 119645142 -123019211 - AluSq SINE Alu -8 305 1 190 267 0 0 chr1 119645177 119645222 -123019131 + L2 LINE L2 3264 3308 -5 * 355 359 13 39 chr1 119645212 119645368 -123018985 - MIR3 SINE MIR -26 182 31 246 302 112 0 chr1 119647214 119647330 -123017023 + L2 LINE L2 3175 3303 -10 21 95 0 0 chr1 119649025 119649088 -123015265 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr1 119649315 119649337 -123015016 + AT_rich Low_complexity Low_complexity 1 22 0 8646 107 18 3 chr1 119649874 119651152 -123013201 + HSMAR2 DNA Mariner 5 1301 -1 23 33 0 0 chr1 119651168 119651198 -123013155 + AT_rich Low_complexity Low_complexity 1 30 0 457 277 110 11 chr1 119651487 119651676 -123012677 + MIR SINE MIR 16 232 -30 220 95 16 0 chr1 119654300 119654339 -123010014 - MIR SINE MIR -110 152 114 461 301 8 8 chr1 119654529 119654652 -123009701 + MER5B DNA MER1_type 4 126 -52 396 255 80 21 chr1 119655333 119655521 -123008832 + L1ME4a LINE L1 5707 5905 -216 293 236 57 29 chr1 119655524 119655664 -123008689 + L1ME4a LINE L1 5975 6118 -3 477 336 88 24 chr1 119655923 119656600 -123007753 - L2 LINE L2 -3 3269 2554 364 293 177 0 chr1 119657059 119657240 -123007113 + MIR SINE MIR 20 232 -30 1889 152 10 13 chr1 119657252 119657561 -123006792 + AluSx SINE Alu 1 308 -4 332 344 8 0 chr1 119657587 119657712 -123006641 + L3 LINE CR1 1046 1171 -406 331 337 59 11 chr1 119657933 119658203 -123006150 + L3 LINE CR1 1170 1452 -125 3731 164 42 9 chr1 119658221 119659464 -123004889 + L1MA9 LINE L1 4614 5904 -408 1360 144 128 34 chr1 119659468 119659766 -123004587 + L1MA9 LINE L1 5980 6305 -7 287 202 90 11 chr1 119660356 119660445 -123003908 - MLT1J2 LTR MaLR 0 450 355 398 248 52 60 chr1 119660450 119660659 -123003694 - MLT1I LTR MaLR -140 310 71 268 312 21 0 chr1 119660703 119660796 -123003557 - MIR3 SINE MIR -110 98 4 2074 131 21 51 chr1 119662963 119663338 -123001015 - THE1B LTR MaLR 0 364 1 12142 86 7 0 chr1 119663338 119664907 -122999446 - THE1B-int LTR MaLR 0 1580 1 1860 144 18 85 chr1 119664907 119664949 -122999404 - THE1B LTR MaLR 0 364 321 207 0 0 0 chr1 119664949 119664972 -122999381 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1860 144 18 85 chr1 119664972 119665319 -122999034 - THE1B LTR MaLR -43 321 1 224 299 0 26 chr1 119665734 119665811 -122998542 - MIR3 SINE MIR -34 174 100 368 263 20 0 chr1 119667176 119667275 -122997078 - L2 LINE L2 -4 3309 3209 1518 258 43 36 chr1 119667703 119667770 -122996583 - L2 LINE L2 -2 3311 3246 2170 143 0 0 chr1 119667770 119668078 -122996275 - AluSx SINE Alu -4 308 1 1518 258 43 36 chr1 119668078 119668766 -122995587 - L2 LINE L2 -67 3246 2553 186 261 0 0 chr1 119669500 119669546 -122994807 + MIR SINE MIR 161 206 -56 282 244 71 39 chr1 119669668 119669795 -122994558 - L2 LINE L2 -4 3309 3179 2342 64 0 3 chr1 119670207 119670525 -122993828 - AluY SINE Alu 0 317 1 1766 174 82 22 chr1 119670549 119670917 -122993436 - MLT1B LTR MaLR 0 390 1 244 328 69 23 chr1 119670982 119671113 -122993240 + L2 LINE L2 2956 3092 -180 526 254 151 5 chr1 119671938 119672123 -122992230 + MIR SINE MIR 8 219 -43 439 332 87 13 chr1 119672367 119672743 -122991610 + L2 LINE L2 2550 3025 -288 511 296 113 22 chr1 119672749 119672979 -122991374 + MIR SINE MIR 2 252 -10 246 360 70 25 chr1 119673118 119673318 -122991035 + L2 LINE L2 3104 3312 -1 272 336 82 0 chr1 119673318 119673440 -122990913 + MIR SINE MIR 47 178 -84 330 194 89 40 chr1 119673445 119673569 -122990784 + L1ME4a LINE L1 5984 6113 -8 261 146 0 0 chr1 119674890 119674938 -122989415 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 459 278 85 6 chr1 119675050 119675226 -122989127 + MIR SINE MIR 73 262 0 772 244 20 15 chr1 119675910 119676111 -122988242 - MIR SINE MIR 0 262 61 205 370 59 15 chr1 119676155 119676290 -122988063 - L2 LINE L2 -7 3265 3125 810 257 180 42 chr1 119678603 119679031 -122985322 + LTR33A LTR ERVL 27 513 -10 253 210 48 0 chr1 119681214 119681276 -122983077 - MIR3 SINE MIR -42 166 102 288 174 36 24 chr1 119681671 119681849 -122982504 + (TG)n Simple_repeat Simple_repeat 1 180 0 241 216 39 52 chr1 119681861 119682014 -122982339 + (TG)n Simple_repeat Simple_repeat 2 152 0 4791 162 24 8 chr1 119682225 119683048 -122981305 + MER45B DNA AcHobo 205 1040 0 539 289 90 2 chr1 119683858 119684058 -122980295 + MIR SINE MIR 36 248 -14 2424 61 0 35 chr1 119684261 119684571 -122979782 + AluY SINE Alu 1 299 -12 228 291 51 13 chr1 119685124 119685203 -122979150 - L2 LINE L2 -52 3220 3139 218 290 63 59 chr1 119685592 119685813 -122978540 - L2 LINE L2 -224 3048 2827 945 295 124 27 chr1 119685913 119686544 -122977809 - L2 LINE L2 -1016 2298 1607 202 314 14 0 chr1 119687810 119687880 -122976473 + L2 LINE L2 3243 3313 0 255 203 16 16 chr1 119687925 119687989 -122976364 - L2 LINE L2 -4 3309 3246 1544 266 92 26 chr1 119688007 119688031 -122976322 + LTR16C LTR ERVL 1 22 -469 4660 100 15 46 chr1 119688031 119688560 -122975793 - LTR8 LTR ERV1 0 691 188 1592 144 126 11 chr1 119688560 119688837 -122975516 + AluSg1 SINE Alu 1 309 0 4660 100 15 46 chr1 119688837 119689020 -122975333 - LTR8 LTR ERV1 -503 188 1 1544 266 92 26 chr1 119689020 119689077 -122975276 + LTR16C LTR ERVL 22 74 -417 2581 213 73 67 chr1 119689077 119689898 -122974455 + LTR1B LTR ERV1 1 826 0 1544 266 92 26 chr1 119689898 119690274 -122974079 + LTR16C LTR ERVL 74 489 -2 2006 208 24 12 chr1 119690494 119690907 -122973446 + MLT1C LTR MaLR 50 467 0 1554 181 51 27 chr1 119691292 119691628 -122972725 - MER2 DNA MER2_type 0 344 1 407 281 202 0 chr1 119692629 119692807 -122971546 - MIR SINE MIR 0 262 49 183 80 0 0 chr1 119694586 119694611 -122969742 + (ATG)n Simple_repeat Simple_repeat 2 26 0 235 336 62 34 chr1 119694770 119695062 -122969291 - L2 LINE L2 -17 3255 2956 2427 80 0 3 chr1 119698264 119698564 -122965789 - AluY SINE Alu -12 299 1 188 236 18 36 chr1 119698599 119698654 -122965699 - MER5A DNA MER1_type -88 101 48 1001 194 0 47 chr1 119698679 119698870 -122965483 - MER58A DNA MER1_type -17 207 26 222 298 58 48 chr1 119699506 119699610 -122964743 + MIR SINE MIR 2 106 -156 1628 175 30 21 chr1 119699629 119699961 -122964392 + L1MA6 LINE L1 5960 6294 -6 23 0 0 0 chr1 119699970 119699993 -122964360 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr1 119700031 119700076 -122964277 + AT_rich Low_complexity Low_complexity 1 45 0 375 266 11 0 chr1 119700362 119700456 -122963897 + MIR SINE MIR 100 194 -68 2290 105 3 6 chr1 119700471 119700784 -122963569 - AluSp SINE Alu -1 312 1 1822 48 18 0 chr1 119701111 119701339 -122963014 - L1PA5 LINE L1 -1 6153 5922 315 326 106 9 chr1 119701463 119701676 -122962677 + MIR SINE MIR 21 250 -12 3239 158 32 80 chr1 119701820 119702546 -122961807 - LTR8 LTR ERV1 0 691 1 183 345 135 15 chr1 119702717 119702917 -122961436 + L3 LINE CR1 1350 1573 -4 1660 188 80 71 chr1 119703078 119703541 -122960812 + MLT1C LTR MaLR 1 467 0 291 54 0 0 chr1 119703825 119703862 -122960491 + (GA)n Simple_repeat Simple_repeat 1 37 0 243 200 0 18 chr1 119704235 119704290 -122960063 - L2 LINE L2 -4 3309 3256 639 253 48 12 chr1 119704388 119704554 -122959799 - MER5B DNA MER1_type -5 173 2 259 278 10 72 chr1 119704806 119704903 -122959450 - MIR SINE MIR -92 116 26 1614 95 0 43 chr1 119705421 119705652 -122958701 + AluSg/x SINE Alu 79 299 -13 197 333 188 0 chr1 119705685 119705781 -122958572 - L2 LINE L2 0 3272 3159 21 36 0 0 chr1 119706163 119706191 -122958162 + AT_rich Low_complexity Low_complexity 1 28 0 1357 181 21 14 chr1 119706327 119706614 -122957739 - AluJo SINE Alu -22 290 2 372 281 59 13 chr1 119706636 119706789 -122957564 - L1ME4a LINE L1 -188 5933 5774 729 198 0 0 chr1 119706797 119706923 -122957430 - AluJb SINE Alu -55 257 132 1721 139 0 0 chr1 119756947 119757184 -122907169 - AluSx SINE Alu -75 237 1 1518 268 45 12 chr1 119757186 119757872 -122906481 - L2 LINE L2 -44 3269 2553 186 261 0 0 chr1 119758608 119758654 -122905699 + MIR SINE MIR 161 206 -56 282 244 71 39 chr1 119758776 119758903 -122905450 - L2 LINE L2 -4 3309 3179 2342 64 0 3 chr1 119759315 119759638 -122904715 - AluY SINE Alu 0 322 1 1766 174 82 22 chr1 119759662 119760030 -122904323 - MLT1B LTR MaLR 0 390 1 244 328 69 23 chr1 119760095 119760226 -122904127 + L2 LINE L2 2956 3092 -180 526 254 151 5 chr1 119761050 119761235 -122903118 + MIR SINE MIR 8 219 -43 439 332 87 13 chr1 119761479 119761855 -122902498 + L2 LINE L2 2550 3025 -288 511 296 113 22 chr1 119761861 119762091 -122902262 + MIR SINE MIR 2 252 -10 246 360 70 25 chr1 119762230 119762430 -122901923 + L2 LINE L2 3104 3312 -1 272 336 82 0 chr1 119762430 119762552 -122901801 + MIR SINE MIR 47 178 -84 313 202 89 40 chr1 119762557 119762681 -122901672 + L1ME4a LINE L1 5984 6113 -8 261 146 0 0 chr1 119764002 119764050 -122900303 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 459 278 85 6 chr1 119764162 119764338 -122900015 + MIR SINE MIR 73 262 0 772 244 20 15 chr1 119765022 119765223 -122899130 - MIR SINE MIR 0 262 61 205 370 59 15 chr1 119765267 119765402 -122898951 - L2 LINE L2 -7 3265 3125 810 257 180 42 chr1 119767715 119768143 -122896210 + LTR33A LTR ERVL 27 513 -10 253 210 48 0 chr1 119770326 119770388 -122893965 - MIR3 SINE MIR -42 166 102 288 182 40 39 chr1 119770783 119771127 -122893226 + (TG)n Simple_repeat Simple_repeat 1 344 0 4791 162 24 8 chr1 119771338 119772161 -122892192 + MER45B DNA AcHobo 205 1040 0 539 289 90 2 chr1 119772971 119773171 -122891182 + MIR SINE MIR 36 248 -14 2424 61 0 35 chr1 119773374 119773684 -122890669 + AluY SINE Alu 1 299 -12 228 291 51 13 chr1 119774237 119774316 -122890037 - L2 LINE L2 -52 3220 3139 218 290 63 59 chr1 119774705 119774926 -122889427 - L2 LINE L2 -224 3048 2827 945 295 124 27 chr1 119775026 119775657 -122888696 - L2 LINE L2 -1016 2298 1607 202 314 14 0 chr1 119776923 119776993 -122887360 + L2 LINE L2 3243 3313 0 255 203 16 16 chr1 119777038 119777102 -122887251 - L2 LINE L2 -4 3309 3246 1544 266 92 26 chr1 119777120 119777144 -122887209 + LTR16C LTR ERVL 1 22 -469 4634 100 17 44 chr1 119777144 119777672 -122886681 - LTR8 LTR ERV1 0 691 185 1535 148 130 11 chr1 119777672 119777942 -122886411 + AluSg1 SINE Alu 1 302 -7 4634 100 17 44 chr1 119777942 119778123 -122886230 - LTR8 LTR ERV1 -506 185 1 1544 266 92 26 chr1 119778123 119778180 -122886173 + LTR16C LTR ERVL 22 74 -417 2608 212 73 67 chr1 119778180 119779001 -122885352 + LTR1B LTR ERV1 1 826 0 1544 266 92 26 chr1 119779001 119779377 -122884976 + LTR16C LTR ERVL 74 489 -2 2023 206 24 12 chr1 119779597 119780010 -122884343 + MLT1C LTR MaLR 50 467 0 1517 182 54 27 chr1 119780395 119780730 -122883623 - MER2 DNA MER2_type 0 344 1 407 281 202 0 chr1 119781731 119781909 -122882444 - MIR SINE MIR 0 262 49 183 80 0 0 chr1 119783688 119783713 -122880640 + (ATG)n Simple_repeat Simple_repeat 2 26 0 235 336 62 34 chr1 119783872 119784164 -122880189 - L2 LINE L2 -17 3255 2956 2427 80 0 3 chr1 119787365 119787665 -122876688 - AluY SINE Alu -12 299 1 188 236 18 36 chr1 119787700 119787755 -122876598 - MER5A DNA MER1_type -88 101 48 1001 194 0 47 chr1 119787780 119787971 -122876382 - MER58A DNA MER1_type -17 207 26 222 298 58 48 chr1 119788607 119788711 -122875642 + MIR SINE MIR 2 106 -156 1628 175 30 21 chr1 119788730 119789062 -122875291 + L1MA6 LINE L1 5960 6294 -6 23 0 0 0 chr1 119789071 119789094 -122875259 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr1 119789132 119789177 -122875176 + AT_rich Low_complexity Low_complexity 1 45 0 375 266 11 0 chr1 119789463 119789557 -122874796 + MIR SINE MIR 100 194 -68 2265 112 3 6 chr1 119789572 119789886 -122874467 - AluSp SINE Alu 0 313 1 1822 48 18 0 chr1 119790213 119790441 -122873912 - L1PA5 LINE L1 -1 6153 5922 315 326 106 9 chr1 119790565 119790778 -122873575 + MIR SINE MIR 21 250 -12 3213 161 32 80 chr1 119790922 119791648 -122872705 - LTR8 LTR ERV1 0 691 1 1660 188 80 71 chr1 119792180 119792643 -122871710 + MLT1C LTR MaLR 1 467 0 309 51 0 0 chr1 119792927 119792966 -122871387 + (GA)n Simple_repeat Simple_repeat 1 39 0 243 200 0 18 chr1 119793339 119793394 -122870959 - L2 LINE L2 -4 3309 3256 639 253 48 12 chr1 119793492 119793658 -122870695 - MER5B DNA MER1_type -5 173 2 259 278 10 72 chr1 119793910 119794007 -122870346 - MIR SINE MIR -92 116 26 1599 99 0 43 chr1 119794524 119794757 -122869596 + AluSg/x SINE Alu 77 299 -11 223 317 173 0 chr1 119794790 119794894 -122869459 - L2 LINE L2 0 3272 3151 217 234 57 65 chr1 119796216 119796426 -122867927 - MIR3 SINE MIR -42 220 15 25 31 0 0 chr1 119796710 119796742 -122867611 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr1 119797364 119797390 -122866963 + AT_rich Low_complexity Low_complexity 1 26 0 670 356 46 35 chr1 119797503 119798146 -122866207 - L2 LINE L2 -181 3091 2440 204 373 40 40 chr1 119799893 119800019 -122864334 + MER5A DNA MER1_type 64 189 0 208 348 51 14 chr1 119800660 119800798 -122863555 + L2 LINE L2 2936 3078 -194 205 121 0 0 chr1 119800999 119801032 -122863321 + L2 LINE L2 3235 3267 -5 22 0 0 0 chr1 119801188 119801210 -122863143 + AT_rich Low_complexity Low_complexity 1 22 0 2275 78 0 0 chr1 119801210 119801516 -122862837 - L1PA5 LINE L1 0 6154 5849 291 155 86 0 chr1 119802029 119802087 -122862266 - AluSc SINE Alu -58 241 179 2054 69 19 0 chr1 119802087 119802347 -122862006 - AluSc SINE Alu -44 265 1 374 237 202 0 chr1 119802348 119802462 -122861891 + MER5A DNA MER1_type 51 187 -2 742 202 48 77 chr1 119803060 119803268 -122861085 - L1ME2 LINE L1 -10 6154 5953 * 2589 222 94 34 chr1 119803240 119804431 -122859922 - L1ME2 LINE L1 -592 5570 4307 1771 254 46 19 chr1 119804433 119805023 -122859330 - L1ME2 LINE L1 -2295 3851 3246 1279 271 96 12 chr1 119805035 119805545 -122858808 - MLT1F1 LTR MaLR -14 553 1 738 232 37 20 chr1 119805546 119805792 -122858561 - L1ME2 LINE L1 -2897 3249 3000 525 221 33 0 chr1 119805919 119806041 -122858312 + MIR SINE MIR 5 130 -132 320 222 11 33 chr1 119806099 119806189 -122858164 + MIR SINE MIR 131 218 -44 425 294 0 9 chr1 119806715 119806824 -122857529 + MIR SINE MIR 1 108 -154 409 266 16 8 chr1 119806841 119806965 -122857388 - L2 LINE L2 -1 3312 3188 237 253 13 27 chr1 119806973 119807048 -122857305 + MIR SINE MIR 159 232 -30 341 384 34 23 chr1 119807629 119807806 -122856547 + L2 LINE L2 3086 3264 -8 374 293 154 0 chr1 119808433 119808556 -122855797 - L2 LINE L2 -6 3266 3125 185 330 53 11 chr1 119808907 119809001 -122855352 + MIR SINE MIR 149 246 -16 267 203 0 62 chr1 119809455 119809519 -122854834 + L2 LINE L2 3213 3272 0 409 248 74 110 chr1 119809598 119809897 -122854456 + L2 LINE L2 2970 3257 -15 254 347 145 8 chr1 119809959 119810083 -122854270 - L2 LINE L2 -9 3263 3123 235 381 76 9 chr1 119810341 119810446 -122853907 + L2 LINE L2 3152 3263 -9 2419 74 0 0 chr1 119810776 119811073 -122853280 + AluY SINE Alu 1 297 -14 1702 271 117 87 chr1 119811189 119811335 -122853018 + HAL1 LINE L1 179 319 -2188 1732 186 11 27 chr1 119811335 119811706 -122852647 - MLT1A1 LTR MaLR 0 365 1 1702 271 117 87 chr1 119811706 119812985 -122851368 + HAL1 LINE L1 319 1667 -840 736 62 31 0 chr1 119812985 119813081 -122851272 - HY3 scRNA scRNA -2 99 1 1702 271 117 87 chr1 119813081 119813341 -122851012 + HAL1 LINE L1 1667 1917 -590 1840 187 48 3 chr1 119813425 119813804 -122850549 - MER57A LTR ERV1 0 403 8 518 120 11 0 chr1 119813896 119813988 -122850365 + L1PB4 LINE L1 6064 6156 0 629 262 75 21 chr1 119814028 119814307 -122850046 + HAL1 LINE L1 2092 2385 -122 441 283 29 36 chr1 119814320 119814458 -122849895 - MER91C DNA MER1_type -3 137 1 332 174 421 33 chr1 119815615 119815736 -122848617 - MIR SINE MIR 0 262 95 204 292 10 52 chr1 119815832 119815928 -122848425 + L2 LINE L2 2721 2812 -502 385 356 21 16 chr1 119816480 119816671 -122847682 + L2 LINE L2 2857 3048 -224 4006 153 29 30 chr1 119817265 119817797 -122846556 - L1MB3 LINE L1 -2 6181 5649 360 0 0 0 chr1 119817797 119817837 -122846516 + (TA)n Simple_repeat Simple_repeat 1 40 0 4006 153 29 30 chr1 119817837 119818103 -122846250 - L1MB3 LINE L1 -534 5649 5384 573 277 35 39 chr1 119819642 119819902 -122844451 + MIR SINE MIR 4 262 0 499 174 83 61 chr1 119820201 119820333 -122844020 + MER69A DNA AcHobo 42 176 -1 850 216 64 17 chr1 119820914 119821150 -122843203 + LTR16A LTR ERVL 204 450 0 997 66 0 0 chr1 119821450 119821586 -122842767 - L1PA13 LINE L1 -1 6162 6027 3310 147 36 3 chr1 119821747 119822327 -122842026 + L1MB3 LINE L1 5583 6181 -2 800 36 0 82 chr1 119822372 119822567 -122841786 + (GA)n Simple_repeat Simple_repeat 2 180 0 319 100 0 20 chr1 119823352 119823402 -122840951 - L2 LINE L2 -3 3310 3262 254 267 9 95 chr1 119823413 119823479 -122840874 - MIR3 SINE MIR -32 176 121 806 201 77 5 chr1 119823479 119823550 -122840803 - MER3 DNA MER1_type -1 208 144 2270 106 0 3 chr1 119823550 119823851 -122840502 + AluSx SINE Alu 1 300 -12 806 201 77 5 chr1 119823851 119823973 -122840380 - MER3 DNA MER1_type -65 144 1 254 267 9 95 chr1 119823973 119824011 -122840342 - MIR3 SINE MIR -87 121 81 943 264 110 34 chr1 119824428 119824928 -122839425 + L2 LINE L2 2130 2667 -647 564 173 0 0 chr1 119825078 119825182 -122839171 + L1ME3 LINE L1 5988 6091 -71 27 49 0 0 chr1 119825184 119825225 -122839128 + AT_rich Low_complexity Low_complexity 1 41 0 669 230 128 5 chr1 119825944 119826148 -122838205 + MIR SINE MIR 6 234 -28 526 221 60 7 chr1 119826396 119826545 -122837808 + MIR3 SINE MIR 46 202 -6 316 318 64 9 chr1 119826926 119827036 -122837317 + MIR SINE MIR 35 150 -112 430 302 118 59 chr1 119827351 119827742 -122836611 - L2 LINE L2 -42 3230 2817 2269 102 0 0 chr1 119827839 119828133 -122836220 + AluSg SINE Alu 1 294 -16 268 315 42 14 chr1 119828644 119828787 -122835566 - MIR3 SINE MIR -61 147 1 1272 176 37 0 chr1 119830105 119830378 -122833975 + L1MA8 LINE L1 6006 6288 -3 599 259 93 5 chr1 119830385 119830578 -122833775 - MIR SINE MIR -1 261 52 854 244 35 39 chr1 119831002 119831260 -122833093 - MIR SINE MIR 0 262 6 831 235 22 0 chr1 119831460 119831643 -122832710 - MIR SINE MIR -74 188 2 1947 108 44 10 chr1 119832597 119832892 -122831461 + AluSx SINE Alu 1 305 -7 1052 197 0 6 chr1 119833297 119833499 -122830854 + AluJb SINE Alu 107 307 0 207 0 0 0 chr1 119833505 119833528 -122830825 + (CAA)n Simple_repeat Simple_repeat 2 24 0 282 360 92 7 chr1 119833563 119833716 -122830637 + MIR SINE MIR 36 201 -61 * 601 336 157 33 chr1 119833715 119834111 -122830242 - L2 LINE L2 -6 3266 2822 935 170 87 5 chr1 119834234 119834440 -122829913 + LTR52 LTR ERVL 195 417 -4 525 313 60 6 chr1 119834445 119834627 -122829726 - MIR SINE MIR -70 192 1 183 382 24 8 chr1 119834634 119834757 -122829596 - L2 LINE L2 -526 2788 2664 327 320 98 50 chr1 119834933 119835662 -122828691 + L1MEd LINE L1 228 1102 -1388 7019 191 39 42 chr1 119835664 119837206 -122827147 + L1M2a LINE L1 1 1537 -5631 3711 191 29 21 chr1 119837241 119837443 -122826910 + L1M2a LINE L1 2639 2838 -4329 704 223 8 0 chr1 119837443 119837573 -122826780 + FLAM_A SINE Alu 1 131 -2 3711 191 29 21 chr1 119837573 119838860 -122825493 + L1M2a LINE L1 2838 4143 -3024 645 250 183 18 chr1 119839272 119839496 -122824857 - MIR SINE MIR -1 261 1 385 310 52 6 chr1 119839525 119839699 -122824654 + L1ME LINE L1 5414 5595 -526 201 208 0 42 chr1 119840216 119840264 -122824089 + L2 LINE L2 3268 3313 0 9809 205 24 56 chr1 119840345 119841285 -122823068 + L1PA16 LINE L1 2287 3256 -2910 1901 180 3 0 chr1 119841285 119841596 -122822757 + AluSx SINE Alu 1 312 0 9809 205 24 56 chr1 119841596 119842661 -122821692 + L1PA16 LINE L1 3256 4354 -1812 699 167 0 8 chr1 119842661 119842781 -122821572 + FLAM_C SINE Alu 1 119 -24 9809 205 24 56 chr1 119842781 119843957 -122820396 + L1PA16 LINE L1 4354 5467 -699 2012 78 0 57 chr1 119843957 119844238 -122820115 + AluSg SINE Alu 1 265 -45 9809 205 24 56 chr1 119844238 119844445 -122819908 + L1PA16 LINE L1 5467 5679 -487 5667 117 47 4 chr1 119844469 119845483 -122818870 - L1PA13 LINE L1 0 6163 5136 2887 147 20 8 chr1 119845483 119845978 -122818375 + L1PA16 LINE L1 5656 6157 -9 27 0 0 0 chr1 119847969 119847996 -122816357 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 119848604 119848625 -122815728 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 119849204 119849226 -122815127 + AT_rich Low_complexity Low_complexity 1 22 0 1003 264 79 28 chr1 119849735 119850383 -122813970 + L1M2a LINE L1 4705 5385 -1782 6189 189 29 21 chr1 119850402 119851408 -122812945 + L1MA9 LINE L1 3 1020 -4726 2120 128 0 0 chr1 119851408 119851704 -122812649 + AluSg1 SINE Alu 1 296 -13 6189 189 29 21 chr1 119851704 119852371 -122811982 + L1MA9 LINE L1 1020 1681 -4065 5536 137 29 3 chr1 119852374 119853487 -122810866 - L1PA15 LINE L1 -3 6162 5045 2219 179 74 8 chr1 119853487 119853962 -122810391 + L1PA15 LINE L1 4530 5035 -1111 4355 200 22 23 chr1 119853969 119855664 -122808689 + L1MA9 LINE L1 1676 3367 -2961 * 5929 22 1 0 chr1 119855660 119856390 -122807963 - L1PA3 LINE L1 -1197 4949 4219 7771 20 0 0 chr1 119856390 119857590 -122806763 + L1PA3 LINE L1 4954 6154 -1 2051 140 20 133 chr1 119857580 119858191 -122806162 + L1MA9 LINE L1 3346 3891 -2437 1010 122 103 17 chr1 119858216 119858441 -122805912 + MLT2A2 LTR ERVL 293 453 0 4558 194 36 30 chr1 119858446 119859243 -122805110 + L1MA9 LINE L1 4533 5324 -1170 716 178 0 23 chr1 119859243 119859372 -122804981 + FLAM_A SINE Alu 2 127 -6 4558 194 36 30 chr1 119859372 119859985 -122804368 + L1MA9 LINE L1 5324 5959 -535 225 0 0 0 chr1 119859985 119860010 -122804343 + (CA)n Simple_repeat Simple_repeat 2 26 0 4558 194 36 30 chr1 119860010 119860511 -122803842 + L1MA9 LINE L1 5959 6456 -38 295 239 106 18 chr1 119860530 119860643 -122803710 + L1ME4a LINE L1 5828 5950 -214 1552 99 5 0 chr1 119860784 119860997 -122803356 - AluSg/x SINE Alu -12 300 87 300 386 171 7 chr1 119861105 119861514 -122802839 - L2 LINE L2 -337 2977 2502 1725 149 25 4 chr1 119861934 119862209 -122802144 - AluJo SINE Alu -31 281 1 258 211 0 0 chr1 119862875 119862927 -122801426 + L1ME4a LINE L1 5975 6026 -95 498 351 17 0 chr1 119863480 119863654 -122800699 - L2 LINE L2 -5 3267 3091 213 167 0 48 chr1 119863686 119863728 -122800625 + L2 LINE L2 3226 3265 -7 481 261 105 77 chr1 119864118 119864596 -122799757 + MLT1J LTR MaLR 21 511 0 273 246 15 0 chr1 119864763 119864828 -122799525 + MLT1J LTR MaLR 99 164 -347 1631 51 0 0 chr1 119865068 119865264 -122799089 + AluY SINE Alu 110 305 -6 387 266 47 135 chr1 119865507 119865826 -122798527 - MLT1H LTR MaLR -146 403 113 278 87 22 0 chr1 119865872 119865918 -122798435 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 14916 219 24 26 chr1 119865931 119867948 -122796405 - L1PA15 LINE L1 0 6816 4797 2201 116 7 0 chr1 119867948 119868240 -122796113 - AluSq SINE Alu -17 296 3 14916 219 24 26 chr1 119868240 119869479 -122794874 - L1PA15 LINE L1 -2019 4797 3557 7859 16 0 0 chr1 119869479 119870536 -122793817 - L1PA3 LINE L1 -1 6154 5098 14916 219 24 26 chr1 119870536 119872752 -122791601 - L1PA15 LINE L1 -3259 3557 1344 2105 300 64 30 chr1 119872750 119873714 -122790639 - L1PA15 LINE L1 -5790 997 1 * 415 334 85 42 chr1 119874014 119874367 -122789986 + L1MEd LINE L1 16 383 -5736 2400 147 15 17 chr1 119874446 119875152 -122789201 + L1MA7 LINE L1 4964 5669 -622 2947 173 24 25 chr1 119875199 119875829 -122788524 + L1MA7 LINE L1 5660 6288 -3 1188 214 57 36 chr1 119875871 119876207 -122788146 - MLT1C LTR MaLR -124 343 1 271 77 0 0 chr1 119876237 119876276 -122788077 + L1MB5 LINE L1 6128 6166 -8 545 271 71 78 chr1 119876303 119877342 -122787011 + L1MEd LINE L1 2113 3144 -2985 417 294 5 25 chr1 119877479 119877676 -122786677 + L1MEd LINE L1 4426 4618 -1511 1465 232 62 53 chr1 119878084 119878699 -122785654 - MER21B LTR ERV1 -88 775 98 430 245 10 10 chr1 119878735 119878833 -122785520 - MER21B LTR ERV1 -765 98 1 309 265 96 44 chr1 119878834 119878970 -122785383 + L1MEd LINE L1 1128 1270 -4935 2522 149 17 12 chr1 119879086 119879508 -122784845 - MSTB LTR MaLR 0 426 3 3153 186 51 24 chr1 119879559 119880301 -122784052 + L1MB8 LINE L1 5416 6177 -1 432 295 79 47 chr1 119880312 119880590 -122783763 + L1MEd LINE L1 2166 2452 -3944 345 250 42 0 chr1 119880591 119880663 -122783690 + Tigger3(Golem) DNA MER2_type 2 76 -2953 23 0 0 0 chr1 119880777 119880800 -122783553 + AT_rich Low_complexity Low_complexity 1 23 0 317 214 48 0 chr1 119880890 119880974 -122783379 - L1MA8 LINE L1 -18 6273 6186 1397 172 20 8 chr1 119880975 119881219 -122783134 + Tigger3(Golem) DNA MER2_type 2783 3029 0 394 256 68 63 chr1 119881234 119881441 -122782912 + L1MEd LINE L1 2436 2643 -3572 1654 167 6 27 chr1 119881446 119881781 -122782572 - L1MD1 LINE L1 0 6242 5915 7293 49 2 0 chr1 119882146 119883432 -122780921 - L1PA5 LINE L1 -3 6151 4865 7643 56 0 0 chr1 119883432 119884418 -122779935 + L1P LINE L1 2839 3824 -2322 3418 155 38 12 chr1 119885250 119885943 -122778410 - L1MD1 LINE L1 -307 5935 5226 1068 189 20 29 chr1 119885955 119886199 -122778154 - L1PA14 LINE L1 -2 6159 5918 2678 131 51 0 chr1 119886310 119886783 -122777570 - L1MA8 LINE L1 -18 6273 5777 1758 135 30 0 chr1 119886784 119887117 -122777236 + L1 LINE L1 4119 4461 -1685 5690 199 57 24 chr1 119887162 119889495 -122774858 + L1MB5 LINE L1 3761 6174 0 3370 175 35 46 chr1 119889499 119890275 -122774078 + L1MD1 LINE L1 5476 6242 0 22 35 0 0 chr1 119890343 119890372 -122773981 + AT_rich Low_complexity Low_complexity 1 29 0 267 80 66 75 chr1 119890406 119890489 -122773864 - L1MA7 LINE L1 -15 6276 6213 5992 136 33 10 chr1 119890513 119892166 -122772187 - L1MA6 LINE L1 -61 6239 4548 227 321 89 36 chr1 119892542 119892654 -122771699 + MIR SINE MIR 26 143 -119 508 312 48 0 chr1 119893724 119893910 -122770443 - L2 LINE L2 -14 3299 3105 6048 13 0 0 chr1 119894136 119894819 -122769534 - L1PA3 LINE L1 -2 6153 5471 1134 22 0 0 chr1 119894819 119894955 -122769398 + L1PA3 LINE L1 5339 5474 -681 308 317 25 33 chr1 119895513 119895633 -122768720 - L2 LINE L2 0 3272 3154 2171 113 3 10 chr1 119897561 119897863 -122766490 - AluSg SINE Alu -10 300 1 548 223 132 10 chr1 119900057 119900225 -122764128 + MIR SINE MIR 41 222 -40 315 0 0 0 chr1 119900605 119900640 -122763713 + (CA)n Simple_repeat Simple_repeat 1 35 0 2241 121 0 0 chr1 119901420 119901725 -122762628 + AluSx SINE Alu 1 305 -7 182 281 70 99 chr1 119902485 119902727 -122761626 - L3 LINE CR1 -294 1283 1049 474 309 14 22 chr1 119903636 119903775 -122760578 - L2 LINE L2 -1 3271 3134 4788 154 56 8 chr1 119903832 119904701 -122759652 + L1MC1 LINE L1 5423 6333 0 349 269 46 19 chr1 119905473 119905610 -122758743 + MIR SINE MIR 7 150 -68 2111 119 0 35 chr1 119905618 119905929 -122758424 - AluSx SINE Alu -12 300 1 2310 98 3 0 chr1 119906110 119906406 -122757947 - AluSp SINE Alu -16 297 1 2823 193 5 14 chr1 119906644 119907198 -122757155 + MER44D DNA MER2_type 2 605 0 2351 75 7 0 chr1 119908147 119908442 -122755911 + AluSc SINE Alu 2 298 -11 2240 56 3 0 chr1 119908977 119909263 -122755090 - L1PA5 LINE L1 -6 6148 5862 250 283 22 11 chr1 119909346 119909438 -122754915 + MIR3 SINE MIR 79 171 -37 264 331 136 0 chr1 119909449 119909603 -122754750 - MIR SINE MIR 0 262 88 207 100 0 0 chr1 119909692 119909722 -122754631 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1114 131 0 21 chr1 119909724 119909915 -122754438 + L1PA13 LINE L1 1616 1802 -4985 254 195 12 0 chr1 119909915 119909997 -122754356 + (TA)n Simple_repeat Simple_repeat 2 84 0 6446 178 26 12 chr1 119910257 119912373 -122751980 - L1PA14 LINE L1 -3 6158 4027 16549 206 14 9 chr1 119912726 119918206 -122746147 + L1PA15 LINE L1 1285 6808 -8 380 300 139 70 chr1 119919208 119919495 -122744858 - L2 LINE L2 -14 3258 2952 715 314 118 24 chr1 119919600 119920142 -122744211 - L2 LINE L2 -562 2752 2160 320 0 25 0 chr1 119920291 119920331 -122744022 + (CA)n Simple_repeat Simple_repeat 2 42 0 375 165 207 16 chr1 119920331 119920452 -122743901 - MER103 DNA DNA -1 165 22 200 271 177 10 chr1 119920551 119920647 -122743706 - MIR3 SINE MIR -36 172 61 415 315 46 0 chr1 119920767 119920897 -122743456 + MIR SINE MIR 47 182 -80 372 260 64 45 chr1 119920880 119921037 -122743316 - MIR3 SINE MIR -81 127 1 * 356 255 41 55 chr1 119921204 119921349 -122743004 + MER5A DNA MER1_type 47 189 0 194 276 138 35 chr1 119924678 119924765 -122739588 - MIR SINE MIR -97 111 16 1777 201 126 12 chr1 119925266 119925783 -122738570 - L1MC4 LINE L1 -18 8024 7449 205 269 19 0 chr1 119926078 119926130 -122738223 + CT-rich Low_complexity Low_complexity 2 54 0 331 297 143 29 chr1 119926494 119926669 -122737684 + MIR SINE MIR 20 214 -48 451 204 0 66 chr1 119926898 119927035 -122737318 + HAL1b LINE L1 1188 1315 -33 205 186 0 0 chr1 119927480 119927523 -122736830 + T-rich Low_complexity Low_complexity 1 43 0 584 257 78 11 chr1 119927726 119927905 -122736448 - MIR SINE MIR -64 198 8 236 171 0 0 chr1 119927988 119928029 -122736324 - MER103 DNA DNA -49 117 77 23 33 0 0 chr1 119928197 119928227 -122736126 + AT_rich Low_complexity Low_complexity 1 30 0 730 178 0 0 chr1 119928227 119928345 -122736008 - FLAM_C SINE Alu -15 118 1 291 337 109 23 chr1 119928995 119929170 -122735183 - MIR3 SINE MIR -3 205 16 269 279 88 0 chr1 119929194 119929262 -122735091 - L2 LINE L2 -56 3257 3184 8268 234 68 27 chr1 119929691 119933746 -122730607 - L1ME1 LINE L1 -121 6114 2226 2308 53 40 13 chr1 119933746 119934049 -122730304 + AluY SINE Alu 1 311 0 8268 234 68 27 chr1 119934049 119934063 -122730290 - L1ME1 LINE L1 -4009 2226 2214 2278 101 0 3 chr1 119934063 119934360 -122729993 + AluSx SINE Alu 6 301 -11 8268 234 68 27 chr1 119934360 119935044 -122729309 - L1ME1 LINE L1 -4021 2214 1559 2005 119 14 0 chr1 119935044 119935322 -122729031 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr1 119935324 119935348 -122729005 + (TA)n Simple_repeat Simple_repeat 2 25 0 8268 234 68 27 chr1 119935348 119935416 -122728937 - L1ME1 LINE L1 -4676 1559 1107 5452 118 13 3 chr1 119935516 119936413 -122727940 + L1PA13 LINE L1 5258 6163 0 872 237 39 59 chr1 119937041 119937378 -122726975 + L1MEc LINE L1 54 383 -6013 2045 250 36 17 chr1 119937421 119937945 -122726408 - MLT2B3 LTR ERVL -20 534 1 1061 245 208 9 chr1 119937952 119938504 -122725849 + L1MEc LINE L1 411 1072 -5324 2211 118 0 3 chr1 119938577 119938881 -122725472 - AluSq SINE Alu -10 303 1 2610 40 7 0 chr1 119939276 119939578 -122724775 + AluY SINE Alu 1 304 -7 234 276 48 14 chr1 119939679 119939824 -122724529 - L1ME1 LINE L1 -5028 1189 1040 400 263 147 55 chr1 119939828 119940170 -122724183 - L1ME1 LINE L1 -4877 819 580 366 343 59 79 chr1 119940364 119940816 -122723537 - L1ME1 LINE L1 -5542 663 103 183 42 0 0 chr1 119940817 119940841 -122723512 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 196 30 61 0 chr1 119940840 119940873 -122723480 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 345 305 43 24 chr1 119941308 119941400 -122722953 - L1ME3 LINE L1 -6 6156 6067 2187 138 0 0 chr1 119941400 119941704 -122722649 - AluSx SINE Alu -8 304 1 345 305 43 24 chr1 119941704 119941821 -122722532 - L1ME3 LINE L1 -95 6067 5943 244 167 0 0 chr1 119941821 119941863 -122722490 - MLT1B LTR MaLR -218 172 131 632 235 30 0 chr1 119941908 119942074 -122722279 - L1ME3 LINE L1 -274 5888 5718 311 146 0 0 chr1 119942367 119942415 -122721938 + MLT1B LTR MaLR 4 51 -339 2754 174 23 24 chr1 119942417 119943037 -122721316 - L1 LINE L1 -1277 4869 4251 791 140 0 29 chr1 119943037 119943173 -122721180 - Tigger1 DNA MER2_type -2286 132 1 1072 148 37 23 chr1 119943176 119943392 -122720961 + L1MC1 LINE L1 5925 6143 -190 642 221 195 7 chr1 119943392 119943546 -122720807 - AluSc SINE Alu -121 188 6 3350 180 74 11 chr1 119943566 119943588 -122720765 - L1MB5 LINE L1 -76 6098 6079 2156 113 0 3 chr1 119943588 119943881 -122720472 - AluSx SINE Alu -20 292 1 3350 180 74 11 chr1 119943881 119944709 -122719644 - L1MB5 LINE L1 -95 6079 5189 1767 205 29 5 chr1 119944765 119945141 -122719212 + MER88 LTR ERVL 79 463 -1 2135 70 3 0 chr1 119947164 119947448 -122716905 - L1PA5 LINE L1 -8 6146 5862 250 283 22 11 chr1 119947531 119947623 -122716730 + MIR3 SINE MIR 79 171 -37 249 338 136 0 chr1 119947634 119947788 -122716565 - MIR SINE MIR 0 262 88 207 100 0 0 chr1 119947877 119947907 -122716446 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1114 131 0 21 chr1 119947909 119948100 -122716253 + L1PA13 LINE L1 1616 1802 -4985 254 195 12 0 chr1 119948100 119948182 -122716171 + (TA)n Simple_repeat Simple_repeat 2 84 0 6311 183 26 12 chr1 119948442 119950558 -122713795 - L1PA14 LINE L1 -3 6158 4027 4972 233 21 16 chr1 119951184 119953194 -122711159 + L1PA13 LINE L1 1427 3461 -3336 740 96 0 16 chr1 119953387 119953512 -122710841 - AluY SINE Alu -188 123 1 1302 228 134 2 chr1 119953563 119953980 -122710373 - L1MEc LINE L1 -5507 889 418 1416 206 194 5 chr1 119953996 119954419 -122709934 + MLT1D LTR MaLR 3 505 0 961 246 132 12 chr1 119954422 119954747 -122709606 - L1MEc LINE L1 -5991 405 42 693 160 164 9 chr1 119954753 119954972 -122709381 - MER33 DNA MER1_type -30 294 42 22 0 0 0 chr1 119955253 119955275 -122709078 + AT_rich Low_complexity Low_complexity 1 22 0 2078 82 14 14 chr1 119955423 119955704 -122708649 + AluSq SINE Alu 1 281 -32 315 0 0 0 chr1 119955704 119955739 -122708614 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 382 305 119 26 chr1 119955760 119955986 -122708367 - MIR SINE MIR -13 249 3 25 31 0 0 chr1 119956006 119956038 -122708315 + AT_rich Low_complexity Low_complexity 1 32 0 1986 164 13 0 chr1 119956433 119956737 -122707616 + AluSx SINE Alu 1 308 -4 2278 115 3 0 chr1 119959458 119959770 -122704583 - AluSp SINE Alu 0 313 1 191 340 0 0 chr1 119961805 119961858 -122702495 + MIR SINE MIR 83 135 -73 251 257 145 7 chr1 119961900 119962052 -122702301 - L1MC5 LINE L1 -58 7903 7731 353 266 84 23 chr1 119962066 119962329 -122702024 - L1MC5 LINE L1 -286 7675 7397 311 310 76 13 chr1 119962386 119962544 -122701809 - L1MC4a LINE L1 -396 7412 7245 219 276 19 86 chr1 119962550 119962655 -122701698 + MIR SINE MIR 115 212 -50 406 258 10 0 chr1 119964055 119964152 -122700201 + MIR SINE MIR 165 262 0 2481 82 0 0 chr1 119964245 119964549 -122699804 + AluY SINE Alu 1 304 -7 1634 204 120 52 chr1 119966145 119966507 -122697846 - MLT1F1 LTR MaLR 0 567 166 1997 125 14 14 chr1 119966507 119966804 -122697549 - AluSx SINE Alu -4 308 12 1634 204 120 52 chr1 119966804 119966901 -122697452 - MLT1F1 LTR MaLR -401 166 77 2212 112 6 6 chr1 119967312 119967625 -122696728 - AluSq SINE Alu 0 313 1 2131 115 7 0 chr1 119967625 119967921 -122696432 - AluSx SINE Alu -12 300 3 919 354 71 13 chr1 119967946 119968469 -122695884 + L2 LINE L2 2318 2870 -444 284 148 16 0 chr1 119968645 119968706 -122695647 + GA-rich Low_complexity Low_complexity 2 63 0 20240 158 29 6 chr1 119968864 119972282 -122692071 + L1M1 LINE L1 16 3514 -4051 904 248 45 58 chr1 119972294 119972414 -122691939 + L1ME3A LINE L1 4248 4368 -1778 1679 174 18 11 chr1 119972414 119972695 -122691658 + AluJo SINE Alu 4 286 -26 904 248 45 58 chr1 119972695 119973058 -122691295 + L1ME3A LINE L1 4368 4725 -1421 1299 223 81 34 chr1 119973181 119973615 -122690738 + MER67B LTR ERV1 1 356 -305 1947 103 57 11 chr1 119973615 119973896 -122690457 + AluSg1 SINE Alu 1 294 -15 1299 223 81 34 chr1 119973896 119973953 -122690400 + MER67B LTR ERV1 356 409 -252 516 250 52 19 chr1 119973924 119974150 -122690203 + MER67D LTR ERV1 275 539 -4 * 397 287 12 30 chr1 119974197 119974361 -122689992 + L1ME3A LINE L1 4884 5044 -1102 15595 204 27 19 chr1 119974377 119975721 -122688632 + L1PA15 LINE L1 1669 3001 -3867 2503 78 0 0 chr1 119975721 119976028 -122688325 - AluSp SINE Alu -6 307 1 15595 204 27 19 chr1 119976028 119976467 -122687886 + L1PA15 LINE L1 3001 3435 -3433 2266 107 0 7 chr1 119976467 119976775 -122687578 + AluSx SINE Alu 4 309 -3 15595 204 27 19 chr1 119976775 119978340 -122686013 + L1PA15 LINE L1 3435 4986 -1882 2076 142 0 16 chr1 119978340 119978657 -122685696 - AluSx SINE Alu 0 312 1 15595 204 27 19 chr1 119978657 119980473 -122683880 + L1PA15 LINE L1 4986 6868 0 1125 287 42 81 chr1 119980479 119980655 -122683698 + L1ME3A LINE L1 5276 5457 -713 1797 123 4 0 chr1 119980655 119980906 -122683447 + AluSx SINE Alu 39 290 -22 1125 287 42 81 chr1 119980906 119981349 -122683004 + L1ME3A LINE L1 5457 5857 -313 2379 38 0 11 chr1 119981349 119981664 -122682689 + AluY SINE Alu 1 312 0 1125 287 42 81 chr1 119981664 119981879 -122682474 + L1ME3A LINE L1 5857 6079 -91 24 0 0 0 chr1 119981958 119981982 -122682371 + AT_rich Low_complexity Low_complexity 1 24 0 271 280 44 80 chr1 119982108 119982358 -122681995 + L1MEc LINE L1 1570 1810 -4586 522 279 60 24 chr1 119982657 119983019 -122681334 + L1MEc LINE L1 2171 2506 -3709 416 179 0 24 chr1 119983074 119983158 -122681195 + MLT2F LTR ERVL 67 148 -515 1788 228 37 3 chr1 119983188 119983565 -122680788 + MLT2F LTR ERVL 213 602 -61 395 228 66 151 chr1 119983665 119983924 -122680429 - L2 LINE L2 0 3313 3077 363 314 104 14 chr1 119983955 119984175 -122680178 + L1MEc LINE L1 3742 3981 -2234 22 70 0 0 chr1 119984182 119984225 -122680128 + AT_rich Low_complexity Low_complexity 1 43 0 446 305 80 10 chr1 119984321 119984521 -122679832 + L1MEc LINE L1 4084 4297 -1918 3021 83 30 11 chr1 119985295 119985731 -122678622 + MLT2A1 LTR ERVL 1 444 0 5713 167 34 16 chr1 119985788 119987009 -122677344 + L1MC1 LINE L1 1535 6396 -6 348 292 87 31 chr1 119987011 119987172 -122677181 + L1MEc LINE L1 1623 1792 -4604 314 247 10 10 chr1 119987758 119987855 -122676498 + L1MEc LINE L1 2514 2610 -3605 1735 191 47 39 chr1 119987885 119987965 -122676388 + MSTD LTR MaLR 1 79 -317 2284 120 13 26 chr1 119987965 119988347 -122676006 - L1PA14 LINE L1 -3 6158 5782 1735 191 47 39 chr1 119988347 119988648 -122675705 + MSTD LTR MaLR 79 385 -11 2815 268 71 58 chr1 119988660 119988803 -122675550 + L1MEc LINE L1 2639 2779 -3436 1821 190 96 44 chr1 119988803 119989168 -122675185 - MLT1D LTR MaLR 0 505 108 2074 118 17 0 chr1 119989168 119989464 -122674889 + AluSx SINE Alu 1 301 -11 1821 190 96 44 chr1 119989464 119989576 -122674777 - MLT1D LTR MaLR -397 108 3 2815 268 71 58 chr1 119989576 119990502 -122673851 + L1MEc LINE L1 2779 3691 -2524 1788 123 95 74 chr1 119990502 119990869 -122673484 - THE1C LTR MaLR 0 375 1 2815 268 71 58 chr1 119990869 119991198 -122673155 + L1MEc LINE L1 3691 4014 -2201 2073 134 25 101 chr1 119991198 119991644 -122672709 + MLT2D LTR ERVL 3 414 0 2815 268 71 58 chr1 119991644 119992468 -122671885 + L1MEc LINE L1 4014 4892 -1323 345 204 133 53 chr1 119992459 119992572 -122671781 + L1ME LINE L1 5803 5924 -329 * 21 0 0 0 chr1 119992581 119992602 -122671751 + AT_rich Low_complexity Low_complexity 1 21 0 1120 301 47 19 chr1 119992755 119993333 -122671020 + L1M4 LINE L1 4476 5069 -1077 1993 236 118 52 chr1 119993344 119993964 -122670389 - MLT2F LTR ERVL 0 663 3 25 0 0 0 chr1 119994016 119994041 -122670312 + AT_rich Low_complexity Low_complexity 1 25 0 700 280 126 38 chr1 119994618 119995115 -122669238 - L2 LINE L2 -62 3251 2699 335 239 18 9 chr1 119995125 119995234 -122669119 - L1MD3 LINE L1 -8 7987 7878 3979 96 16 0 chr1 119995246 119995833 -122668520 - L1PA13 LINE L1 -342 5819 5225 2061 129 15 0 chr1 119995833 119996162 -122668191 + L1PA13 LINE L1 5814 6152 -11 924 217 29 36 chr1 119996173 119996449 -122667904 - L1MD3 LINE L1 -142 7853 7580 1243 206 25 118 chr1 119996457 119996864 -122667489 - MLT1A2 LTR MaLR -5 369 1 256 253 33 33 chr1 119996866 119996957 -122667396 - L1MC4a LINE L1 -404 7404 7314 7124 53 3 0 chr1 119997134 119998774 -122665579 - L1PA6 LINE L1 -2 6152 4508 276 206 67 81 chr1 119998774 119999406 -122664947 - L1MD3 LINE L1 -506 7489 6690 20919 159 25 8 chr1 119999407 120005254 -122659099 + L1MA2 LINE L1 17 6023 -1700 2538 45 0 0 chr1 120005254 120005544 -122658809 + AluY SINE Alu 13 302 -9 20919 159 25 8 chr1 120005544 120007276 -122657077 + L1MA2 LINE L1 6023 7723 0 3410 213 46 62 chr1 120007304 120008610 -122655743 - L1MC4a LINE L1 -1104 6704 5281 2787 260 92 18 chr1 120008611 120009483 -122654870 - L2 LINE L2 -616 2698 1763 253 186 100 14 chr1 120009646 120009716 -122654637 - MIR SINE MIR -5 257 182 351 364 0 19 chr1 120009839 120009993 -122654360 + L2 LINE L2 2882 3032 -240 2357 249 138 6 chr1 120010117 120010819 -122653534 - L2 LINE L2 -536 2778 1984 1432 202 71 7 chr1 120011042 120011324 -122653029 - AluJb SINE Alu -2 300 1 254 191 0 16 chr1 120011523 120011586 -122652767 + CT-rich Low_complexity Low_complexity 2 63 0 2108 115 0 3 chr1 120011586 120011872 -122652481 - AluSx SINE Alu -27 285 1 542 241 90 7 chr1 120011925 120012070 -122652283 - L2 LINE L2 -1313 2001 1845 2752 154 40 32 chr1 120012070 120012668 -122651685 + L1MB7 LINE L1 5573 6175 -9 2357 82 10 10 chr1 120012797 120013102 -122651251 - AluSx SINE Alu -7 305 1 698 169 17 0 chr1 120013139 120013257 -122651096 - FLAM_A SINE Alu -13 120 1 22 35 0 0 chr1 120013848 120013877 -122650476 + AT_rich Low_complexity Low_complexity 1 29 0 239 306 10 0 chr1 120015049 120015147 -122649206 - L1ME LINE L1 -421 5700 5602 2347 79 0 7 chr1 120015272 120015563 -122648790 - AluSc SINE Alu -20 289 1 2083 104 0 0 chr1 120015566 120015836 -122648517 - AluSx SINE Alu -13 299 30 198 191 0 0 chr1 120017061 120017103 -122647250 + (TA)n Simple_repeat Simple_repeat 1 42 0 41 48 0 0 chr1 120019010 120019072 -122645281 + AT_rich Low_complexity Low_complexity 1 62 0 259 360 120 12 chr1 120019898 120020148 -122644205 + L2 LINE L2 2940 3216 -97 1252 193 0 0 chr1 120020442 120020644 -122643709 - AluJo SINE Alu -28 284 83 824 330 123 32 chr1 120020975 120021632 -122642721 + L2 LINE L2 2054 2770 -544 1442 350 133 21 chr1 120021633 120022966 -122641387 - L2 LINE L2 -1260 2054 573 2297 67 6 51 chr1 120023322 120023638 -122640715 + AluY SINE Alu 2 303 -8 191 412 33 20 chr1 120025129 120025282 -122639071 - MIR3 SINE MIR -48 160 6 235 258 90 11 chr1 120025398 120025487 -122638866 + MIR SINE MIR 57 152 -110 2245 82 41 0 chr1 120025615 120025907 -122638446 + AluSc SINE Alu 1 304 -5 229 348 54 9 chr1 120026219 120026331 -122638022 - MIR SINE MIR -64 198 82 232 316 169 30 chr1 120026762 120026999 -122637354 + L2 LINE L2 2360 2629 -685 238 302 63 48 chr1 120027361 120027487 -122636866 + L2 LINE L2 3142 3269 -3 196 238 111 16 chr1 120027502 120027565 -122636788 - MIR SINE MIR -183 79 11 315 0 0 0 chr1 120028207 120028242 -122636111 + (CA)n Simple_repeat Simple_repeat 2 36 0 194 264 303 34 chr1 120028705 120028883 -122635470 - MIR SINE MIR 0 262 37 313 352 75 5 chr1 120030858 120031057 -122633296 + L2 LINE L2 2006 2218 -1096 576 289 132 0 chr1 120031086 120031290 -122633063 - MIR SINE MIR -30 232 2 530 329 92 74 chr1 120031290 120031701 -122632652 + L2 LINE L2 2227 2652 -662 2248 80 3 0 chr1 120031701 120031989 -122632364 - AluY SINE Alu -9 302 14 530 329 92 74 chr1 120031989 120032127 -122632226 + L2 LINE L2 2652 2786 -528 2127 143 0 6 chr1 120032153 120032467 -122631886 - AluSx SINE Alu 0 312 1 378 0 0 0 chr1 120032578 120032620 -122631733 + (CA)n Simple_repeat Simple_repeat 1 42 0 1136 121 0 0 chr1 120033138 120033295 -122631058 - AluSg/x SINE Alu -10 300 144 2462 183 65 10 chr1 120033435 120033943 -122630410 + MER44D DNA MER2_type 1 591 -14 465 311 96 27 chr1 120034014 120034307 -122630046 + L1MEd LINE L1 938 1250 -4869 1739 253 75 38 chr1 120034413 120034728 -122629625 - MLT1E LTR MaLR -15 578 231 3309 195 39 2 chr1 120034728 120035365 -122628988 - MER67B LTR ERV1 0 661 1 1739 253 75 38 chr1 120035365 120035606 -122628747 - MLT1E LTR MaLR -362 231 1 8915 167 13 2 chr1 120035786 120038248 -122626105 + L1PA13 LINE L1 3669 6163 0 872 237 39 59 chr1 120038876 120039213 -122625140 + L1MEc LINE L1 54 383 -6013 2040 246 36 19 chr1 120039256 120039781 -122624572 - MLT2B3 LTR ERVL -20 534 1 1061 245 208 9 chr1 120039788 120040340 -122624013 + L1MEc LINE L1 411 1072 -5324 2211 118 0 3 chr1 120040413 120040717 -122623636 - AluSq SINE Alu -10 303 1 2601 40 7 0 chr1 120041112 120041413 -122622940 + AluY SINE Alu 1 303 -8 234 276 48 14 chr1 120041514 120041659 -122622694 - L1MEc LINE L1 -5028 1356 1207 400 263 147 55 chr1 120041663 120042005 -122622348 - L1MEc LINE L1 -4877 986 747 366 343 59 79 chr1 120042199 120042651 -122621702 - L1MEc LINE L1 -5542 830 270 196 30 61 0 chr1 120042673 120042706 -122621647 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 345 305 43 24 chr1 120043141 120043233 -122621120 - L1ME3 LINE L1 -6 6156 6067 2187 138 0 0 chr1 120043233 120043537 -122620816 - AluSx SINE Alu -8 304 1 345 305 43 24 chr1 120043537 120043654 -122620699 - L1ME3 LINE L1 -95 6067 5943 244 167 0 0 chr1 120043654 120043696 -122620657 - MLT1B LTR MaLR -218 172 131 632 235 30 0 chr1 120043741 120043907 -122620446 - L1ME3 LINE L1 -274 5888 5718 311 146 0 0 chr1 120044200 120044248 -122620105 + MLT1B LTR MaLR 4 51 -339 2784 174 23 23 chr1 120044250 120044869 -122619484 - L1 LINE L1 -1277 4869 4251 791 140 0 29 chr1 120044869 120045005 -122619348 - Tigger1 DNA MER2_type -2286 132 1 1780 154 69 15 chr1 120045008 120045398 -122618955 + L1MC2 LINE L1 5925 6335 -9 283 257 9 29 chr1 120045399 120045504 -122618849 + L1M4 LINE L1 2963 3065 -3081 292 98 0 0 chr1 120045507 120045548 -122618805 - MLT2C2 LTR ERVL 0 464 424 1534 209 0 31 chr1 120045551 120045838 -122618515 - AluJb SINE Alu -29 283 6 3350 180 74 11 chr1 120045858 120045880 -122618473 - L1MB5 LINE L1 -76 6098 6079 2153 115 0 3 chr1 120045880 120046175 -122618178 - AluSx SINE Alu -18 294 1 3350 180 74 11 chr1 120046175 120047003 -122617350 - L1MB5 LINE L1 -95 6079 5189 1767 205 29 5 chr1 120047059 120047435 -122616918 + MER88 LTR ERVL 79 463 -1 3731 50 2 2 chr1 120049458 120049921 -122614432 - L1PA5 LINE L1 -8 6146 5684 359 390 4 0 chr1 120051157 120051424 -122612929 - HERVL74 LTR ERVL -2343 3342 3075 481 341 61 41 chr1 120052140 120052849 -122611504 - HERVL74 LTR ERVL -584 2972 2250 368 291 69 34 chr1 120053155 120053330 -122611023 + L1M3a LINE L1 272 452 -5503 451 266 99 92 chr1 120053347 120053780 -122610573 + L1M3a LINE L1 535 970 -5333 1906 259 22 28 chr1 120053831 120054703 -122609650 + L1M3a LINE L1 1160 2092 -4290 3351 165 29 62 chr1 120054738 120055703 -122608650 + L1M2 LINE L1 4529 5452 -743 831 187 7 7 chr1 120055703 120055853 -122608500 - MSTB LTR MaLR -2 424 275 546 225 31 12 chr1 120055864 120056024 -122608329 - L1 LINE L1 -815 5331 5169 1322 212 14 11 chr1 120056024 120056307 -122608046 - MSTB LTR MaLR -142 284 1 984 197 0 0 chr1 120056307 120056495 -122607858 + L1M2 LINE L1 5446 5633 -679 2578 125 52 4 chr1 120057051 120057508 -122606845 - L1MA2 LINE L1 0 6304 5826 201 39 0 0 chr1 120057508 120057534 -122606819 + (TTG)n Simple_repeat Simple_repeat 2 27 0 353 125 0 0 chr1 120057540 120057604 -122606749 - L1PB1 LINE L1 -17 6134 6071 3480 164 54 2 chr1 120057604 120058636 -122605717 - L1P5 LINE L1 -566 5585 4488 485 196 18 62 chr1 120060043 120060211 -122604142 + L1 LINE L1 4095 4272 -1874 441 36 0 0 chr1 120060949 120061004 -122603349 + (CA)n Simple_repeat Simple_repeat 2 56 0 234 62 0 0 chr1 120061004 120061036 -122603317 + (GA)n Simple_repeat Simple_repeat 1 32 0 260 315 79 24 chr1 120061220 120061385 -122602968 + L2 LINE L2 2673 2846 -468 10139 172 36 56 chr1 120061408 120064285 -122600068 - L1MA2 LINE L1 0 7723 4791 1063 159 0 0 chr1 120064285 120064455 -122599898 - AluSc SINE Alu -1 308 139 10139 172 36 56 chr1 120064455 120064925 -122599428 - L1MA2 LINE L1 -2932 4791 4313 1171 64 0 13 chr1 120064925 120065082 -122599271 - L1PA11 LINE L1 0 6174 6020 10139 172 36 56 chr1 120065082 120066470 -122597883 - L1MA2 LINE L1 -3410 4313 2899 2176 85 7 36 chr1 120066470 120066777 -122597576 - AluY SINE Alu -13 298 1 10139 172 36 56 chr1 120066777 120067169 -122597184 - L1MA2 LINE L1 -4824 2899 2501 2319 113 24 46 chr1 120067169 120067541 -122596812 + THE1B LTR MaLR 1 364 0 10139 172 36 56 chr1 120067541 120067865 -122596488 - L1MA2 LINE L1 -5222 2501 2172 2119 114 14 7 chr1 120067865 120068154 -122596199 - AluSx SINE Alu -21 291 1 10139 172 36 56 chr1 120068154 120068166 -122596187 - L1MA2 LINE L1 -5551 2172 2161 2095 113 10 0 chr1 120068166 120068459 -122595894 - AluSx SINE Alu -16 296 1 10139 172 36 56 chr1 120068459 120069072 -122595281 - L1MA2 LINE L1 -5562 2161 1673 1777 120 4 0 chr1 120069072 120069331 -122595022 + THE1B LTR MaLR 1 260 -104 4026 71 9 2 chr1 120069331 120069864 -122594489 + L1PA8 LINE L1 5632 6168 -4 279 250 56 0 chr1 120069875 120069947 -122594406 - L1MA2 LINE L1 -7480 85 10 343 200 39 84 chr1 120069975 120070130 -122594223 + MER65A LTR ERV1 298 445 0 592 277 23 59 chr1 120070137 120070440 -122593913 + MER65A-int LTR ERV1 11 302 -4569 256 160 0 170 chr1 120070459 120070565 -122593788 + MER65A-int LTR ERV1 501 588 -4283 330 222 34 77 chr1 120070624 120070741 -122593612 + LTR57-int LTR ERVL 304 415 -4928 759 129 10 119 chr1 120071098 120071147 -122593206 + MER34 LTR ERV1 27 80 -462 817 150 8 15 chr1 120071147 120071280 -122593073 + FLAM_C SINE Alu 1 132 -1 759 129 10 119 chr1 120071280 120071423 -122592930 + MER34 LTR ERV1 80 198 -344 740 224 77 6 chr1 120071483 120071666 -122592687 + MER34 LTR ERV1 315 510 -32 677 161 0 0 chr1 120071759 120071871 -122592482 + FLAM_A SINE Alu 28 139 -3 402 222 28 8 chr1 120072129 120072252 -122592101 + MER65B-int LTR ERV1 3622 5678 -653 1463 273 41 16 chr1 120072263 120072747 -122591606 + MER65B-int LTR ERV1 4376 4871 0 319 250 58 0 chr1 120072765 120072869 -122591484 + MER65B LTR ERV1 19 128 -403 2036 196 80 9 chr1 120073219 120073781 -122590572 + L1 LINE L1 4266 4867 -1279 23585 144 17 23 chr1 120074285 120076759 -122587594 + L1PA8A LINE L1 756 3245 -3201 1917 52 0 0 chr1 120076759 120076988 -122587365 + AluY SINE Alu 82 310 -1 23585 144 17 23 chr1 120076988 120080228 -122584125 + L1PA8A LINE L1 3245 6433 -13 2607 89 0 22 chr1 120080254 120080624 -122583729 + L1PA8A LINE L1 5769 6130 -1 7182 166 21 31 chr1 120081705 120082591 -122581762 - L1MA5A LINE L1 0 6939 6046 2006 145 0 10 chr1 120082591 120082895 -122581458 - AluSx SINE Alu -11 301 1 7182 166 21 31 chr1 120082895 120084660 -122579693 - L1MA5A LINE L1 -893 6046 4313 3732 221 13 5 chr1 120084653 120085414 -122578939 - L1MA5A LINE L1 -5014 1775 1009 * 12168 225 31 18 chr1 120085592 120087436 -122576917 + L1P4 LINE L1 2184 4003 -3600 1718 194 0 0 chr1 120087436 120087759 -122576594 + AluJb SINE Alu 1 323 0 12168 225 31 18 chr1 120087759 120089628 -122574725 + L1P4 LINE L1 4003 5973 -1630 2169 69 0 4 chr1 120089628 120089931 -122574422 + AluY SINE Alu 10 311 0 12168 225 31 18 chr1 120089931 120091197 -122573156 + L1P4 LINE L1 5973 7221 -382 2930 207 27 15 chr1 120091207 120091864 -122572489 + L1M1 LINE L1 19 683 -6882 * 9584 157 14 7 chr1 120091863 120093663 -122570690 + L1PA11 LINE L1 2410 4222 -1924 1706 93 24 38 chr1 120093676 120093967 -122570386 + THE1B LTR MaLR 8 294 -70 3031 169 57 11 chr1 120093970 120094580 -122569773 + LTR9B LTR ERV1 7 644 0 603 188 87 7 chr1 120094678 120094816 -122569537 + HUERS-P3 LTR ERV1 411 559 -6859 3838 199 20 23 chr1 120094887 120095724 -122568629 + HUERS-P3 LTR ERV1 1044 1878 -5540 * 6081 155 5 3 chr1 120095723 120096728 -122567625 + HUERS-P3 LTR ERV1 2278 3284 -5635 740 227 0 0 chr1 120096721 120096862 -122567491 + HUERS-P3 LTR ERV1 4539 4679 -4240 * 3841 141 5 3 chr1 120096894 120097510 -122566843 + HUERS-P3 LTR ERV1 4961 5577 -3342 3660 162 5 3 chr1 120097495 120098101 -122566252 + HUERS-P3 LTR ERV1 6162 6768 -2151 * 360 228 0 11 chr1 120098150 120098242 -122566111 + HUERS-P3 LTR ERV1 6856 6934 -484 745 184 12 11 chr1 120098244 120098439 -122565914 + HUERS-P3 LTR ERV1 2383 4320 -560 1193 192 5 5 chr1 120098773 120098992 -122565361 + HUERS-P3 LTR ERV1 8701 8919 0 1878 175 52 14 chr1 120098998 120099579 -122564774 + LTR9B LTR ERV1 7 644 0 389 287 9 0 chr1 120099579 120099654 -122564699 + THE1C LTR MaLR 298 373 -2 11219 92 10 1 chr1 120099662 120101213 -122563140 + THE1B-int LTR MaLR 9 1573 -7 2281 122 19 30 chr1 120101218 120101586 -122562767 + THE1B LTR MaLR 1 364 0 6600 148 14 0 chr1 120101587 120103520 -122560833 + L1PA11 LINE L1 4226 6174 0 2833 119 27 47 chr1 120103521 120103864 -122560489 + L1MA3 LINE L1 5769 6098 -207 2161 81 0 20 chr1 120103864 120104159 -122560194 + AluY SINE Alu 1 289 -22 2833 119 27 47 chr1 120104159 120104363 -122559990 + L1MA3 LINE L1 6098 6305 0 1264 96 5 0 chr1 120104396 120104584 -122559769 + L1PA16 LINE L1 5769 5957 -209 441 179 21 0 chr1 120104592 120104687 -122559666 + L1MA6 LINE L1 3876 3972 -2174 3335 161 41 24 chr1 120104705 120106416 -122557937 + L1MA6 LINE L1 4255 6045 -255 2417 63 0 0 chr1 120106416 120106715 -122557638 + AluY SINE Alu 1 299 -12 3335 161 41 24 chr1 120106715 120106738 -122557615 + L1MA6 LINE L1 6045 6066 -234 1316 119 5 5 chr1 120106839 120107024 -122557329 - AluSp SINE Alu -128 185 1 813 136 13 7 chr1 120107030 120107185 -122557168 + L1MA6 LINE L1 6145 6300 0 1169 278 105 10 chr1 120107260 120107860 -122556493 - L1ME3A LINE L1 -240 5999 5343 571 167 0 0 chr1 120107892 120107982 -122556371 + 5S rRNA rRNA 1 90 -31 706 313 64 24 chr1 120107982 120108700 -122555653 - L1ME3A LINE L1 -907 5308 4562 385 167 12 0 chr1 120108767 120108851 -122555502 - L1MA6 LINE L1 -167 6133 6049 492 99 0 0 chr1 120108855 120108926 -122555427 - Alu SINE Alu -15 296 226 1758 126 108 59 chr1 120108926 120109111 -122555242 - MSTA LTR MaLR -38 390 215 2211 97 0 0 chr1 120109111 120109400 -122554953 - AluSx SINE Alu -23 289 1 1758 126 108 59 chr1 120109400 120109586 -122554767 - MSTA LTR MaLR -213 215 1 318 303 264 11 chr1 120109658 120109935 -122554418 - L1ME3A LINE L1 -1842 4373 4027 198 0 0 0 chr1 120110465 120110487 -122553866 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 714 212 162 26 chr1 120111872 120112291 -122552062 - L1ME3A LINE L1 -2830 3385 2910 199 256 0 0 chr1 120112387 120112426 -122551927 + L2 LINE L2 3137 3175 -97 14974 203 26 56 chr1 120112600 120113372 -122550981 - L1PA15 LINE L1 -24 6792 5998 7054 59 14 0 chr1 120113372 120114467 -122549886 - L1PA7 LINE L1 -1 6153 5054 14974 203 26 56 chr1 120114467 120115203 -122549150 - L1PA15 LINE L1 -818 5998 5241 207 0 0 0 chr1 120115203 120115226 -122549127 + (TTG)n Simple_repeat Simple_repeat 2 24 0 14974 203 26 56 chr1 120115226 120118733 -122545620 - L1PA15 LINE L1 -1575 5241 1926 322 155 0 28 chr1 120118855 120118926 -122545427 + MADE1 DNA Mariner 12 80 0 803 202 110 0 chr1 120119029 120119202 -122545151 - L1PA15 LINE L1 -4889 1898 1707 2349 91 16 0 chr1 120119222 120119541 -122544812 - L1PA10 LINE L1 -11 6157 5834 486 156 0 0 chr1 120119541 120119631 -122544722 + AluSg/x SINE Alu 217 306 -3 292 300 56 6 chr1 120119649 120119829 -122544524 - L1ME3A LINE L1 -3756 2459 2271 13337 203 11 8 chr1 120120286 120123663 -122540690 - L1P5 LINE L1 -461 5690 2310 7732 21 0 0 chr1 120123672 120125261 -122539092 - L1PA3 LINE L1 -3 6152 4563 8259 22 5 1 chr1 120125261 120126238 -122538115 + L1PA3 LINE L1 3568 4548 -1598 * 19227 104 46 5 chr1 120126233 120126485 -122537868 - L1PBa LINE L1 -3818 3044 2804 243 0 0 0 chr1 120126485 120126512 -122537841 + (TC)n Simple_repeat Simple_repeat 2 28 0 19227 104 46 5 chr1 120126512 120129180 -122535173 - L1PBa LINE L1 -4058 2804 3 319 256 94 17 chr1 120129195 120129312 -122535041 + MLT1F1 LTR MaLR 112 237 -312 397 217 25 76 chr1 120129339 120129496 -122534857 + MLT1F1 LTR MaLR 413 561 -6 264 282 36 0 chr1 120129502 120129609 -122534744 + MLT1F1-int LTR MaLR 1 91 -1280 368 254 44 26 chr1 120129667 120129781 -122534572 + MLT1H LTR MaLR 433 548 -1 509 222 60 23 chr1 120129782 120129998 -122534355 - L1ME3A LINE L1 -4089 2307 2084 768 248 101 67 chr1 120131225 120131283 -122533070 + MLT1H LTR MaLR 72 127 -378 1543 190 14 24 chr1 120131283 120131578 -122532775 - AluJb SINE Alu -19 293 2 768 248 101 67 chr1 120131578 120131976 -122532377 + MLT1H LTR MaLR 127 504 -1 373 222 40 0 chr1 120131977 120132076 -122532277 - L1MEc LINE L1 -4089 2307 2205 24 0 0 0 chr1 120132124 120132148 -122532205 + AT_rich Low_complexity Low_complexity 1 24 0 4105 158 90 12 chr1 120132184 120132950 -122531403 + LTR1B LTR ERV1 1 826 0 4201 156 11 0 chr1 120132968 120133686 -122530667 - L1MA4A LINE L1 -8 6295 5570 582 15 0 0 chr1 120133698 120133765 -122530588 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 2133 122 7 3 chr1 120133765 120134069 -122530284 - AluSq SINE Alu -8 305 1 1434 110 75 43 chr1 120134069 120134350 -122530003 - L1MA4A LINE L1 -718 5585 5296 1102 238 39 3 chr1 120134343 120134629 -122529724 - L1PB4 LINE L1 0 6156 5861 * 2341 37 0 0 chr1 120134630 120134903 -122529450 + AluY SINE Alu 35 307 -4 262 159 0 48 chr1 120134913 120134976 -122529377 + MSTB LTR MaLR 202 261 -165 15694 67 3 1 chr1 120134983 120137838 -122526515 - L1PA6 LINE L1 0 6154 3297 1294 129 26 26 chr1 120137957 120138059 -122526294 + L1MA6 LINE L1 6037 6138 -162 2288 81 7 3 chr1 120138059 120138355 -122525998 - AluSp SINE Alu -16 297 1 1294 129 26 26 chr1 120138355 120138516 -122525837 + L1MA6 LINE L1 6137 6300 0 1333 271 108 13 chr1 120138589 120139191 -122525162 - L1ME3A LINE L1 -238 6001 5343 605 167 0 0 chr1 120139223 120139313 -122525040 + 5S rRNA rRNA 1 90 -31 883 315 60 19 chr1 120139313 120140031 -122524322 - L1ME3A LINE L1 -907 5308 4562 411 167 12 0 chr1 120140098 120140182 -122524171 - L1MA6 LINE L1 -167 6133 6049 485 99 0 0 chr1 120140186 120140257 -122524096 - Alu SINE Alu -15 297 227 1891 126 108 59 chr1 120140257 120140442 -122523911 - MSTA LTR MaLR -38 390 215 2211 97 0 0 chr1 120140442 120140731 -122523622 - AluSx SINE Alu -23 289 1 1891 126 108 59 chr1 120140731 120140917 -122523436 - MSTA LTR MaLR -213 215 1 319 303 264 11 chr1 120140989 120141266 -122523087 - L1ME3A LINE L1 -1842 4373 4027 198 0 0 0 chr1 120141796 120141818 -122522535 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 714 212 162 26 chr1 120143204 120143623 -122520730 - L1ME3A LINE L1 -2830 3385 2910 199 256 0 0 chr1 120143719 120143758 -122520595 + L2 LINE L2 3137 3175 -97 14955 203 26 57 chr1 120143932 120144704 -122519649 - L1PA15 LINE L1 -24 6792 5998 7054 59 14 0 chr1 120144704 120145799 -122518554 - L1PA7 LINE L1 -1 6153 5054 14955 203 26 57 chr1 120145799 120146535 -122517818 - L1PA15 LINE L1 -818 5998 5241 207 0 0 0 chr1 120146535 120146558 -122517795 + (TTG)n Simple_repeat Simple_repeat 2 24 0 14955 203 26 57 chr1 120146558 120150066 -122514287 - L1PA15 LINE L1 -1575 5241 1926 322 155 0 28 chr1 120150188 120150259 -122514094 + MADE1 DNA Mariner 12 80 0 803 202 110 0 chr1 120150362 120150535 -122513818 - L1PA15 LINE L1 -4889 1898 1707 2349 91 16 0 chr1 120150555 120150874 -122513479 - L1PA10 LINE L1 -11 6157 5834 486 156 0 0 chr1 120150874 120150964 -122513389 + AluSg/x SINE Alu 217 306 -3 292 300 56 6 chr1 120150982 120151162 -122513191 - L1ME3A LINE L1 -3756 2459 2271 13324 204 11 8 chr1 120151619 120154996 -122509357 - L1P5 LINE L1 -461 5690 2310 7732 21 0 0 chr1 120155005 120156594 -122507759 - L1PA3 LINE L1 -3 6152 4563 8259 22 5 1 chr1 120156594 120157571 -122506782 + L1PA3 LINE L1 3568 4548 -1598 * 19197 104 46 5 chr1 120157566 120157818 -122506535 - L1PBa LINE L1 -3818 3044 2804 243 0 0 0 chr1 120157818 120157845 -122506508 + (TC)n Simple_repeat Simple_repeat 2 28 0 19197 104 46 5 chr1 120157845 120160514 -122503839 - L1PBa LINE L1 -4058 2804 3 319 256 94 17 chr1 120160529 120160646 -122503707 + MLT1F1 LTR MaLR 112 237 -312 397 217 25 76 chr1 120160673 120160830 -122503523 + MLT1F1 LTR MaLR 413 561 -6 264 282 36 0 chr1 120160836 120160943 -122503410 + MLT1F1-int LTR MaLR 1 91 -1280 368 254 44 26 chr1 120161001 120161115 -122503238 + MLT1H LTR MaLR 433 548 -1 509 222 60 23 chr1 120161116 120161332 -122503021 - L1ME3A LINE L1 -4089 2307 2084 628 248 101 67 chr1 120162559 120162617 -122501736 + MLT1H LTR MaLR 72 127 -378 1565 190 14 24 chr1 120162617 120162912 -122501441 - AluJb SINE Alu -19 293 2 628 248 101 67 chr1 120162912 120163310 -122501043 + MLT1H LTR MaLR 127 504 -1 349 222 40 0 chr1 120163311 120163410 -122500943 - L1MEc LINE L1 -4089 2307 2205 24 0 0 0 chr1 120163458 120163482 -122500871 + AT_rich Low_complexity Low_complexity 1 24 0 4141 158 90 12 chr1 120163518 120164284 -122500069 + LTR1B LTR ERV1 1 826 0 4139 156 11 0 chr1 120164302 120165020 -122499333 - L1MA4A LINE L1 -8 6295 5570 582 15 0 0 chr1 120165032 120165099 -122499254 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 2155 122 7 3 chr1 120165099 120165403 -122498950 - AluSq SINE Alu -8 305 1 1352 110 75 43 chr1 120165403 120165684 -122498669 - L1MA4A LINE L1 -718 5585 5296 * 1460 196 40 35 chr1 120165677 120165964 -122498389 - L1PB4 LINE L1 0 6156 5865 2512 11 0 0 chr1 120165964 120166238 -122498115 + AluYa5 SINE Alu 35 308 -3 1460 196 40 35 chr1 120166238 120166347 -122498006 - L1PB4 LINE L1 -291 5865 5758 1098 103 0 13 chr1 120166356 120166512 -122497841 - L1PA15 LINE L1 -13 6152 5999 8284 195 24 9 chr1 120166526 120168019 -122496334 - L1PA15 LINE L1 -320 5845 4305 1975 153 0 10 chr1 120168019 120168313 -122496040 - AluSx SINE Alu -19 293 3 8284 195 24 9 chr1 120168313 120169272 -122495081 - L1PA15 LINE L1 -1860 4305 3362 333 225 100 8 chr1 120169275 120169395 -122494958 - MER106B DNA MER1_type -11 1048 918 1032 279 48 9 chr1 120169784 120170100 -122494253 + MER70A LTR ERVL 1 328 -144 462 276 92 29 chr1 120170436 120170751 -122493602 - L1MC4 LINE L1 -937 7105 6771 39965 58 5 1 chr1 120170924 120177049 -122487304 - L1PA5 LINE L1 -5 6149 1 1538 118 35 82 chr1 120177143 120177483 -122486870 - L1MA7 LINE L1 -2 6289 5966 3767 179 43 15 chr1 120177490 120178345 -122486008 - L1 LINE L1 -1293 4853 3975 * 8156 199 19 17 chr1 120178344 120181307 -122483046 - L1PA15 LINE L1 -1 7602 4643 1656 150 56 22 chr1 120181338 120181700 -122482653 + THE1C LTR MaLR 1 380 -48 4590 273 39 31 chr1 120181713 120183496 -122480857 - L1PA15 LINE L1 -4510 3071 1275 2256 111 0 13 chr1 120183530 120183836 -122480517 + AluSp SINE Alu 1 302 -11 401 86 2 0 chr1 120185546 120185608 -122478745 - L1MA2 LINE L1 -30 6270 6208 5101 193 20 31 chr1 120185608 120185865 -122478488 - L1 LINE L1 -926 5220 4962 548 219 49 8 chr1 120185865 120185988 -122478365 - FLAM_C SINE Alu -5 128 1 5101 193 20 31 chr1 120185988 120186967 -122477386 - L1 LINE L1 -1184 4962 3997 5088 203 48 11 chr1 120186962 120188287 -122476066 - L1 LINE L1 -2421 3725 2352 * 4268 196 39 19 chr1 120188295 120189059 -122475294 + L1MC1 LINE L1 5264 6056 -277 2193 161 3 0 chr1 120189059 120189395 -122474958 + MER1B DNA MER1_type 1 337 0 4268 196 39 19 chr1 120189395 120189673 -122474680 + L1MC1 LINE L1 6056 6327 -6 2067 237 17 17 chr1 120189690 120190264 -122474089 + L1MB8 LINE L1 5490 6063 -115 2284 111 0 3 chr1 120190313 120190619 -122473734 + AluSg SINE Alu 1 305 -5 1199 132 10 0 chr1 120190787 120190984 -122473369 + MER4A LTR ERV1 466 664 0 1323 164 47 64 chr1 120190986 120191060 -122473293 - MSTB LTR MaLR -25 403 329 23321 67 3 4 chr1 120191060 120194990 -122469363 + L1PA6 LINE L1 2237 6154 0 1323 164 47 64 chr1 120194990 120195070 -122469283 - MSTB LTR MaLR -99 329 249 2125 121 0 13 chr1 120195070 120195377 -122468976 - AluY SINE Alu -4 307 5 1323 164 47 64 chr1 120195377 120195580 -122468773 - MSTB LTR MaLR -179 249 1 7844 187 20 30 chr1 120195580 120197247 -122467106 - MSTB-int LTR MaLR 0 1651 1 1037 231 146 0 chr1 120197253 120197582 -122466771 - MSTB1 LTR MaLR -6 426 50 277 145 81 0 chr1 120197586 120197648 -122466705 + L1MD2 LINE L1 5910 5976 -383 28 48 0 0 chr1 120197972 120198014 -122466339 + AT_rich Low_complexity Low_complexity 1 42 0 2637 107 33 0 chr1 120198218 120198610 -122465743 + LTR22A LTR ERVK 16 420 -38 7683 176 85 11 chr1 120198612 120201937 -122462416 - L1PBa LINE L1 -3113 3749 6 514 323 70 40 chr1 120202008 120202336 -122462017 - L1ME LINE L1 -4774 1610 1273 21 89 0 0 chr1 120202351 120202407 -122461946 + AT_rich Low_complexity Low_complexity 1 56 0 388 282 193 15 chr1 120202451 120202710 -122461643 - L1ME LINE L1 -5065 1307 1003 413 211 183 29 chr1 120203340 120203548 -122460805 - L1ME1 LINE L1 -89 6872 6633 4640 175 87 32 chr1 120203590 120203996 -122460357 - L1MA4 LINE L1 -55 7664 7282 1488 227 3 26 chr1 120203996 120204309 -122460044 - AluJb SINE Alu -1 311 6 4640 175 87 32 chr1 120204309 120206165 -122458188 - L1MA4 LINE L1 -437 7282 5263 1879 104 32 0 chr1 120206168 120206418 -122457935 + AluSx SINE Alu 1 258 -54 6256 236 80 22 chr1 120206418 120210021 -122454332 - L1MA4 LINE L1 -3053 4512 17 664 219 91 61 chr1 120210022 120210351 -122454002 - L1ME1 LINE L1 -316 6645 6307 1284 229 82 22 chr1 120210374 120210875 -122453478 - L1ME1 LINE L1 -1290 5651 5121 485 271 171 28 chr1 120210884 120211104 -122453249 - L1ME1 LINE L1 -2217 4724 4537 2425 139 49 7 chr1 120211104 120211515 -122452838 + MSTA LTR MaLR 1 428 0 485 271 171 28 chr1 120211515 120211803 -122452550 - L1ME1 LINE L1 -2404 4537 4143 1185 199 186 13 chr1 120211890 120212278 -122452075 - MLT1C LTR MaLR -7 460 6 288 276 56 13 chr1 120212350 120212561 -122451792 - L1ME1 LINE L1 -5033 1910 1825 600 322 71 3 chr1 120212606 120212960 -122451393 - L1ME1 LINE L1 -4890 1533 1156 234 250 29 0 chr1 120212986 120213054 -122451299 + (TA)n Simple_repeat Simple_repeat 1 70 0 1466 156 71 19 chr1 120213054 120213323 -122451030 - AluJo SINE Alu -29 283 1 2360 95 0 7 chr1 120214001 120214305 -122450048 - AluSx SINE Alu -10 302 1 453 226 20 20 chr1 120214419 120214521 -122449832 - MLT1J1 LTR MaLR -316 130 29 2476 179 47 59 chr1 120214767 120215324 -122449029 - MER44D DNA MER2_type 0 605 1 21 0 0 0 chr1 120215406 120215427 -122448926 + AT_rich Low_complexity Low_complexity 1 21 0 225 65 0 0 chr1 120219379 120219410 -122444943 + (A)n Simple_repeat Simple_repeat 1 31 0 542 252 68 63 chr1 120219929 120220151 -122444202 - L2 LINE L2 -1 3312 3090 979 175 95 10 chr1 120220278 120220478 -122443875 + MLT1C LTR MaLR 251 467 0 287 295 13 0 chr1 120220748 120220826 -122443527 - L2 LINE L2 -2 3270 3192 24 0 0 0 chr1 120220871 120220895 -122443458 + AT_rich Low_complexity Low_complexity 1 24 0 429 298 58 120 chr1 120220899 120221432 -122442921 - L2 LINE L2 -326 2987 2512 1623 196 23 39 chr1 120222347 120222592 -122441761 + MER31B LTR ERV1 1 239 -227 2308 156 40 17 chr1 120222592 120223014 -122441339 + MSTB1 LTR MaLR 1 432 0 1623 196 23 39 chr1 120223014 120223155 -122441198 + MER31B LTR ERV1 239 381 -85 632 241 0 0 chr1 120224027 120224160 -122440193 - FLAM_A SINE Alu 0 133 1 191 292 15 0 chr1 120225612 120225677 -122438676 + L2 LINE L2 2895 2960 -312 496 261 27 0 chr1 120225712 120225823 -122438530 - L2 LINE L2 -9 3304 3191 396 338 20 35 chr1 120225996 120226194 -122438159 + MIR SINE MIR 65 259 -3 22 0 0 0 chr1 120226510 120226532 -122437821 + AT_rich Low_complexity Low_complexity 1 22 0 294 80 0 0 chr1 120227122 120227172 -122437181 - Alu SINE Alu 0 302 253 262 341 11 11 chr1 120227190 120227281 -122437072 - MIR3 SINE MIR -13 195 105 1172 214 99 28 chr1 120227483 120227805 -122436548 + MER2 DNA MER2_type 1 345 0 350 295 82 49 chr1 120228544 120228727 -122435626 + L1MC/D LINE L1 5539 5727 -2081 282 57 0 0 chr1 120229042 120229077 -122435276 + U2 snRNA snRNA 1 35 -153 699 305 35 0 chr1 120229194 120229394 -122434959 + MIR SINE MIR 8 214 -48 2297 93 14 0 chr1 120229411 120229701 -122434652 + AluSg SINE Alu 1 294 -16 2101 97 0 55 chr1 120229705 120230015 -122434338 + AluSg SINE Alu 5 297 -13 331 289 74 0 chr1 120230793 120230914 -122433439 + L2 LINE L2 2507 2636 -678 3443 171 177 22 chr1 120230917 120231652 -122432701 + MER21B LTR ERV1 1 849 -14 1942 156 10 3 chr1 120231657 120231959 -122432394 - AluJb SINE Alu -3 309 6 2254 111 0 0 chr1 120232163 120232461 -122431892 - AluSx SINE Alu -12 300 3 369 252 87 10 chr1 120232637 120232740 -122431613 - MIR SINE MIR -150 112 2 356 255 52 59 chr1 120232880 120233033 -122431320 + L2 LINE L2 3107 3258 -55 29 0 0 0 chr1 120233186 120233215 -122431138 + AT_rich Low_complexity Low_complexity 1 29 0 1019 299 28 28 chr1 120233737 120234132 -122430221 - L1MEd LINE L1 -5402 717 323 367 279 144 57 chr1 120234286 120234584 -122429769 - L1MEd LINE L1 -5790 329 6 274 353 129 22 chr1 120234587 120234859 -122429494 + L2 LINE L2 2967 3267 -5 259 221 59 0 chr1 120235198 120235266 -122429087 + MIR SINE MIR 79 150 -112 2192 82 3 64 chr1 120235270 120235600 -122428753 + AluSg SINE Alu 1 310 0 557 168 46 46 chr1 120235627 120235758 -122428595 - MER3 DNA MER1_type -1 208 78 1348 87 0 6 chr1 120235759 120235931 -122428422 + AluSc SINE Alu 82 252 -57 2515 46 7 3 chr1 120235957 120236260 -122428093 + AluY SINE Alu 1 304 -7 205 227 30 15 chr1 120236382 120236448 -122427905 + MIR SINE MIR 129 195 -67 229 396 10 10 chr1 120236935 120237031 -122427322 + MIR SINE MIR 17 112 -150 2250 88 7 0 chr1 120237490 120237787 -122426566 + AluSc SINE Alu 1 299 -10 21 0 0 0 chr1 120239115 120239136 -122425217 + GC_rich Low_complexity Low_complexity 1 21 0 218 177 32 48 chr1 120240790 120240852 -122423501 + T-rich Low_complexity Low_complexity 5 65 0 703 206 20 0 chr1 120241494 120241640 -122422713 + AluSg/x SINE Alu 135 283 -29 297 316 52 35 chr1 120241658 120241832 -122422521 - L2 LINE L2 -15 3298 3122 362 316 165 30 chr1 120242130 120242500 -122421853 + L2 LINE L2 2822 3241 -72 1710 171 27 3 chr1 120242721 120243013 -122421340 - AluJb SINE Alu -9 303 5 2212 81 42 0 chr1 120244006 120244289 -122420064 - AluSx SINE Alu -16 296 2 21 0 0 0 chr1 120244290 120244311 -122420042 + AT_rich Low_complexity Low_complexity 1 21 0 804 210 34 20 chr1 120245983 120246197 -122418156 + MIR SINE MIR 41 260 -2 33 0 0 0 chr1 120246594 120246627 -122417726 + AT_rich Low_complexity Low_complexity 1 33 0 2182 118 10 0 chr1 120248254 120248560 -122415793 - AluSx SINE Alu -3 309 1 4697 111 62 16 chr1 120249984 120250115 -122414238 - MER4E LTR ERV1 -5 774 650 2222 108 7 3 chr1 120250115 120250422 -122413931 - AluSc SINE Alu -1 308 1 4697 111 62 16 chr1 120250422 120251030 -122413323 - MER4E LTR ERV1 -129 650 1 2366 145 37 5 chr1 120251843 120252278 -122412075 - L1MA5 LINE L1 0 6300 5852 1214 142 122 0 chr1 120252278 120252483 -122411870 - AluSx SINE Alu -82 230 1 11527 166 32 53 chr1 120252486 120253187 -122411166 - L1MA5 LINE L1 -1011 5135 4421 405 0 0 0 chr1 120253187 120253232 -122411121 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 11527 166 32 53 chr1 120253232 120254478 -122409875 - L1MA5 LINE L1 -1725 4421 3151 224 57 0 29 chr1 120254478 120254513 -122409840 + (TA)n Simple_repeat Simple_repeat 2 35 0 11527 166 32 53 chr1 120254513 120254528 -122409825 - L1MA5 LINE L1 -2995 3151 3137 2061 114 14 7 chr1 120254528 120254817 -122409536 - AluSq SINE Alu -22 291 1 11527 166 32 53 chr1 120254817 120255456 -122408897 - L1MA5 LINE L1 -3009 3137 2585 1175 125 125 24 chr1 120255456 120255664 -122408689 + MER30 DNA MER1_type 1 229 -1 11527 166 32 53 chr1 120255664 120255700 -122408653 - L1MA5 LINE L1 -3561 2585 2550 983 217 30 0 chr1 120256314 120256517 -122407836 + MER3 DNA MER1_type 1 209 0 1901 115 3 44 chr1 120257039 120257334 -122407019 + AluSx SINE Alu 1 283 -29 186 71 0 0 chr1 120257334 120257362 -122406991 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 567 189 7 63 chr1 120257523 120257666 -122406687 - MER103 DNA DNA -10 156 22 450 305 125 25 chr1 120257759 120257879 -122406474 - L3 LINE CR1 -27 1550 1443 2808 10 0 6 chr1 120257879 120258191 -122406162 - AluYa5 SINE Alu 0 311 2 450 305 125 25 chr1 120258191 120258270 -122406083 - L3 LINE CR1 -134 1443 1331 685 196 118 3 chr1 120258923 120259110 -122405243 + L1MA9 LINE L1 6075 6279 -33 22 0 0 0 chr1 120260377 120260399 -122403954 + AT_rich Low_complexity Low_complexity 1 22 0 571 356 59 25 chr1 120260989 120261464 -122402889 - L2 LINE L2 -404 2910 2420 267 314 133 54 chr1 120261550 120262085 -122402268 - L2 LINE L2 -1211 2103 1527 1337 164 117 29 chr1 120262326 120262600 -122401753 + AluJb SINE Alu 1 298 -14 244 0 0 0 chr1 120263589 120263616 -122400737 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2070 86 17 27 chr1 120263616 120263897 -122400456 - AluY SINE Alu -31 280 1 2600 53 3 0 chr1 120264021 120264324 -122400029 - AluY SINE Alu -7 304 1 322 246 76 8 chr1 120264495 120264613 -122399740 + MIR3 SINE MIR 83 208 0 22 0 0 0 chr1 120266346 120266368 -122397985 + AT_rich Low_complexity Low_complexity 1 22 0 1357 193 82 21 chr1 120266862 120267142 -122397211 - AluJo SINE Alu -7 305 9 2052 73 0 0 chr1 120267467 120267715 -122396638 - AluY SINE Alu -14 297 50 1906 154 62 0 chr1 120267854 120268178 -122396175 + MER2 DNA MER2_type 1 344 0 433 281 81 0 chr1 120268867 120269027 -122395326 + MIR SINE MIR 74 246 -16 2258 97 7 3 chr1 120270715 120271014 -122393339 - AluSp SINE Alu -13 300 1 21 36 0 0 chr1 120271345 120271373 -122392980 + AT_rich Low_complexity Low_complexity 1 28 0 953 238 127 20 chr1 120272544 120273031 -122391322 - L1MC4a LINE L1 -1637 6171 5633 213 59 29 0 chr1 120274169 120274203 -122390150 - MIR SINE MIR -105 157 123 942 243 28 12 chr1 120274485 120274732 -122389621 + MIR SINE MIR 3 253 -9 2626 139 51 9 chr1 120275547 120275999 -122388354 - Tigger4(Zombi) DNA MER2_type 0 2731 2261 2820 146 13 13 chr1 120276000 120276452 -122387901 - Tigger4(Zombi) DNA MER2_type -2279 452 1 276 243 131 9 chr1 120278776 120278883 -122385470 - L2 LINE L2 -5 3308 3189 2349 62 3 7 chr1 120279055 120279346 -122385007 - AluY SINE Alu -21 290 1 24 53 0 0 chr1 120279922 120279960 -122384393 + AT_rich Low_complexity Low_complexity 1 38 0 187 238 48 0 chr1 120280290 120280332 -122384021 - MIR SINE MIR -117 91 48 4962 118 11 4 chr1 120280924 120281630 -122382723 - MER50 LTR ERV1 -23 711 1 3895 103 34 26 chr1 120281832 120282397 -122381956 - MER61E LTR ERV1 0 569 1 180 0 0 0 chr1 120282432 120282452 -122381901 + (A)n Simple_repeat Simple_repeat 1 20 0 2812 126 61 73 chr1 120282606 120283223 -122381130 + MER4B LTR ERV1 1 779 0 363 23 0 0 chr1 120283571 120283615 -122380738 + (TC)n Simple_repeat Simple_repeat 1 44 0 198 0 0 0 chr1 120284378 120284400 -122379953 + (CA)n Simple_repeat Simple_repeat 2 23 0 207 304 0 13 chr1 120285756 120285835 -122378518 + (CATA)n Simple_repeat Simple_repeat 2 79 0 1008 227 54 0 chr1 120287129 120287332 -122377021 + MER58A DNA MER1_type 1 214 -10 198 0 0 0 chr1 120288136 120288158 -122376195 + (T)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr1 120288240 120288265 -122376088 + AT_rich Low_complexity Low_complexity 1 25 0 298 266 80 9 chr1 120289109 120289225 -122375128 - MIR SINE MIR -79 129 2 245 316 60 26 chr1 120289414 120289531 -122374822 - MER5B DNA MER1_type -32 146 26 299 168 214 76 chr1 120292881 120293012 -122371341 - MIR SINE MIR -41 221 73 2610 41 0 0 chr1 120293180 120293475 -122370878 + AluY SINE Alu 8 302 -9 1088 271 55 6 chr1 120293675 120294000 -122370353 + MER102b DNA MER1_type 1 341 0 626 289 67 13 chr1 120295191 120295416 -122368937 - MIR SINE MIR -6 256 20 228 329 34 60 chr1 120295922 120296071 -122368282 - L2 LINE L2 -5 3267 3123 421 320 102 19 chr1 120297210 120297416 -122366937 - MIR SINE MIR -30 232 10 242 216 149 27 chr1 120297447 120297521 -122366832 + L2 LINE L2 3186 3268 -4 379 326 99 47 chr1 120298211 120298634 -122365719 + L2 LINE L2 2827 3271 -1 340 222 9 65 chr1 120300094 120300202 -122364151 - MIR SINE MIR -55 207 106 573 265 128 23 chr1 120301402 120301621 -122362732 - MIR SINE MIR -19 243 2 342 0 0 0 chr1 120305993 120306031 -122358322 + (CA)n Simple_repeat Simple_repeat 2 39 0 1870 239 46 20 chr1 120309096 120309595 -122354758 + L1ME3A LINE L1 5652 6163 -7 2297 87 3 20 chr1 120309968 120310268 -122354085 - AluSq SINE Alu -18 295 1 282 274 162 22 chr1 120310545 120310724 -122353629 + MIR SINE MIR 2 205 -57 629 307 59 40 chr1 120311802 120312173 -122352180 + L2 LINE L2 2936 3313 0 259 238 16 0 chr1 120312656 120312719 -122351634 + MLT1L LTR MaLR 496 559 -56 584 216 22 91 chr1 120312719 120312951 -122351402 + MER112 DNA MER1_type 32 247 -13 863 204 37 11 chr1 120312979 120313170 -122351183 + MIR SINE MIR 24 219 -43 186 255 21 0 chr1 120313162 120313209 -122351144 - L2 LINE L2 -552 2762 2715 * 404 131 0 0 chr1 120313417 120313478 -122350875 - L1MC2 LINE L1 -30 6314 6254 2416 104 0 0 chr1 120314907 120315215 -122349138 + AluSx SINE Alu 1 308 -4 237 214 83 48 chr1 120315641 120315725 -122348628 + MIR SINE MIR 20 106 -102 1460 222 69 48 chr1 120315740 120316304 -122348049 + L1M4 LINE L1 2131 2706 -3440 273 329 164 7 chr1 120316652 120316792 -122347561 - L2 LINE L2 0 3272 3111 1445 250 82 12 chr1 120317266 120317666 -122346687 + MLT1H LTR MaLR 72 499 -50 508 197 47 84 chr1 120317668 120318070 -122346283 - L1MB2 LINE L1 -1 6170 5825 230 189 19 19 chr1 120318543 120318596 -122345757 + MER103 DNA DNA 113 165 -1 1441 196 32 3 chr1 120318656 120318967 -122345386 - MER33 DNA MER1_type 0 324 5 6282 90 6 37 chr1 120319057 120319389 -122344964 - L1PA12 LINE L1 -15 6153 5812 2477 90 0 0 chr1 120319389 120319699 -122344654 - AluY SINE Alu -1 310 1 6282 90 6 37 chr1 120319699 120320450 -122343903 - L1PA12 LINE L1 -356 5812 5089 439 264 120 42 chr1 120322079 120322295 -122342058 + MIR SINE MIR 3 235 -27 265 197 66 0 chr1 120322714 120322775 -122341578 + MER94 DNA DNA 10 74 -60 30 0 0 0 chr1 120323064 120323094 -122341259 + AT_rich Low_complexity Low_complexity 1 30 0 2163 161 38 3 chr1 120323160 120323533 -122340820 - MLT1B LTR MaLR -4 386 1 1430 210 111 35 chr1 120323581 120324004 -122340349 + MER114 LTR ERV 49 503 -145 18211 145 25 15 chr1 120324138 120327044 -122337309 + L1MA3 LINE L1 12 2946 -4619 8649 173 40 12 chr1 120327653 120329563 -122334790 + L1MA3 LINE L1 2996 5001 -2564 1968 145 148 0 chr1 120329563 120329936 -122334417 - MSTA LTR MaLR 0 428 1 8649 173 40 12 chr1 120329936 120330475 -122333878 + L1MA3 LINE L1 5001 5523 -2042 2310 96 0 13 chr1 120330820 120331122 -122333231 - AluSp SINE Alu -15 298 1 348 113 0 0 chr1 120332155 120332208 -122332145 - Alu SINE Alu 0 300 248 1273 235 34 12 chr1 120332417 120332745 -122331608 - MLT1A1 LTR MaLR -11 354 20 830 220 16 22 chr1 120332914 120333096 -122331257 - AluJb SINE Alu -3 309 129 1476 169 33 76 chr1 120333282 120333584 -122330769 + AluJb SINE Alu 2 290 -22 558 228 55 0 chr1 120335276 120335403 -122328950 - MER94 DNA DNA 0 134 1 366 298 33 8 chr1 120335420 120335541 -122328812 + L2 LINE L2 3149 3272 0 2916 6 0 0 chr1 120335642 120335953 -122328400 + AluYa5 SINE Alu 1 311 0 1955 162 0 10 chr1 120336501 120336803 -122327550 - AluJb SINE Alu -13 299 1 341 208 100 83 chr1 120338463 120338583 -122325770 + LTR16A LTR ERVL 195 360 -90 2008 158 10 0 chr1 120338812 120339116 -122325237 - AluSx SINE Alu -5 307 1 350 248 17 17 chr1 120339189 120339306 -122325047 - MIR SINE MIR -14 248 132 6476 139 29 14 chr1 120341074 120343266 -122321087 + L1MA3 LINE L1 5503 7724 0 21 36 0 0 chr1 120343268 120343296 -122321057 + AT_rich Low_complexity Low_complexity 1 28 0 486 120 65 33 chr1 120343567 120343659 -122320694 - MLT1A1 LTR MaLR -270 95 1 25 31 0 0 chr1 120344523 120344555 -122319798 + AT_rich Low_complexity Low_complexity 1 32 0 232 271 51 0 chr1 120344580 120344639 -122319714 + MER94 DNA DNA 72 133 -1 411 282 58 6 chr1 120345967 120346123 -122318230 + MIR SINE MIR 13 176 -86 922 244 62 0 chr1 120348375 120348617 -122315736 + MIR SINE MIR 1 257 -5 180 323 108 0 chr1 120351490 120351583 -122312770 - L2 LINE L2 -64 3208 3106 1331 107 24 10 chr1 120351583 120351788 -122312565 + L1MA5A LINE L1 6086 6293 -4 501 281 130 5 chr1 120352484 120352669 -122311684 - MIR SINE MIR -8 254 47 319 284 116 7 chr1 120352774 120352929 -122311424 + MIR SINE MIR 80 251 -11 217 345 195 17 chr1 120353583 120353757 -122310596 - L2 LINE L2 -52 3220 3016 374 266 196 0 chr1 120353814 120353957 -122310396 + L2 LINE L2 3101 3271 -1 383 77 0 15 chr1 120355317 120355382 -122308971 + (TTCA)n Simple_repeat Simple_repeat 1 64 0 529 279 62 26 chr1 120355403 120355629 -122308724 + MIR SINE MIR 12 245 -17 6258 12 0 3 chr1 120356544 120357202 -122307151 + SVA Other Other 731 1386 0 1690 233 39 23 chr1 120357202 120357654 -122306699 - MER31B LTR ERV1 -7 536 1 231 228 0 76 chr1 120359502 120359581 -122304772 - MIR SINE MIR -73 189 117 3345 168 29 71 chr1 120359692 120360411 -122303942 - LTR8 LTR ERV1 -2 689 1 3262 105 56 83 chr1 120360697 120361287 -122303066 + MER4B LTR ERV1 1 574 -36 595 301 61 22 chr1 120362032 120362453 -122301900 - L2 LINE L2 -165 3107 2201 300 180 0 140 chr1 120363091 120363191 -122301162 - MIR SINE MIR -56 206 121 1221 291 135 72 chr1 120365673 120366272 -122298081 - MER115 DNA AcHobo -5 688 52 1387 146 9 9 chr1 120366274 120366494 -122297859 + MER58A DNA MER1_type 4 223 -1 202 262 172 35 chr1 120366660 120366805 -122297548 - MIR SINE MIR -73 189 25 859 273 15 26 chr1 120367105 120367369 -122296984 + MIR SINE MIR 2 262 0 947 242 113 4 chr1 120367373 120367629 -122296724 - MER57A LTR ERV1 -2 401 118 872 262 124 47 chr1 120367997 120368531 -122295822 + MLT1L LTR MaLR 41 615 0 1208 252 15 29 chr1 120368590 120368931 -122295422 + L2 LINE L2 2486 2821 -493 1433 282 93 67 chr1 120368932 120369176 -122295177 - L1MEc LINE L1 -5197 1199 963 2325 109 0 0 chr1 120369176 120369470 -122294883 - AluSx SINE Alu -16 296 3 1433 282 93 67 chr1 120369470 120369704 -122294649 - L1MEc LINE L1 -5433 963 737 1748 174 7 13 chr1 120369704 120370003 -122294350 - AluJo SINE Alu -15 297 1 1433 282 93 67 chr1 120370003 120370599 -122293754 - L1MEc LINE L1 -5659 737 96 191 275 58 0 chr1 120471691 120471760 -122192593 + MIR SINE MIR 76 148 -60 293 297 52 32 chr1 120472429 120472584 -122191769 + L3b LINE CR1 1224 1381 -202 187 394 0 0 chr1 120473022 120473093 -122191260 + L3b LINE CR1 1380 1450 -133 378 289 61 28 chr1 120473486 120473666 -122190687 + MIR SINE MIR 15 200 -62 380 55 18 0 chr1 120475075 120475130 -122189223 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 2512 166 88 8 chr1 120475503 120475991 -122188362 - MER74A LTR ERVL -30 528 2 435 267 166 0 chr1 120476017 120476204 -122188149 - MIR SINE MIR -10 252 35 21 0 0 0 chr1 120476303 120476324 -122188029 + AT_rich Low_complexity Low_complexity 1 21 0 2124 86 45 24 chr1 120476444 120476735 -122187618 + AluSx SINE Alu 1 297 -15 290 298 0 9 chr1 120477273 120477387 -122186966 - HAL1b LINE L1 -710 638 526 201 271 0 0 chr1 120477557 120477605 -122186748 + MIR SINE MIR 58 105 -103 269 191 21 24 chr1 120477630 120477720 -122186633 - MIR SINE MIR -75 133 46 333 218 24 40 chr1 120477904 120477924 -122186429 - L1MA10 LINE L1 0 6334 6315 1567 202 44 0 chr1 120477924 120478241 -122186112 - L1ME1 LINE L1 -8 6158 5828 1019 181 0 11 chr1 120478245 120478422 -122185931 - FRAM SINE Alu -1 175 1 620 229 0 0 chr1 120478425 120478547 -122185806 - L1ME1 LINE L1 -347 5819 5698 2642 224 42 28 chr1 120478566 120479306 -122185047 + MER20B DNA MER1_type 34 783 0 2441 173 36 5 chr1 120479446 120479892 -122184461 - LOR1b LTR ERV1 0 461 2 1323 282 99 45 chr1 120480109 120480898 -122183455 - L2 LINE L2 -251 3062 2222 729 324 49 39 chr1 120481983 120482554 -122181799 + HAL1b LINE L1 62 638 -710 16217 137 33 19 chr1 120482725 120484186 -122180167 - L1MA2 LINE L1 0 7723 6284 1811 177 0 10 chr1 120484186 120484486 -122179867 + AluJb SINE Alu 5 301 -11 16217 137 33 19 chr1 120484486 120486224 -122178129 - L1MA2 LINE L1 -1439 6284 4572 216 0 0 0 chr1 120486224 120486248 -122178105 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2043 121 7 10 chr1 120486251 120486540 -122177813 - AluSg SINE Alu -22 288 1 16217 137 33 19 chr1 120486540 120487849 -122176504 - L1MA2 LINE L1 -3152 4571 3282 2394 100 0 0 chr1 120487849 120488148 -122176205 - AluSg SINE Alu -11 299 1 16217 137 33 19 chr1 120488148 120490619 -122173734 - L1MA2 LINE L1 -4441 3282 533 198 0 0 0 chr1 120490880 120490902 -122173451 + (TC)n Simple_repeat Simple_repeat 1 22 0 1798 207 147 78 chr1 120490920 120491757 -122172596 + L1MC5 LINE L1 6633 7527 -434 525 255 38 52 chr1 120491847 120492059 -122172294 + L1ME3A LINE L1 5962 6170 0 712 248 114 52 chr1 120492075 120492522 -122171831 - L2 LINE L2 -1082 2232 1758 336 296 74 0 chr1 120493330 120493438 -122170915 + MIR SINE MIR 117 232 -30 450 239 166 31 chr1 120495223 120495386 -122168967 - MIR SINE MIR -17 245 61 204 40 0 0 chr1 120495394 120495419 -122168934 + (T)n Simple_repeat Simple_repeat 1 25 0 2398 82 7 7 chr1 120495555 120495860 -122168493 - AluSc SINE Alu -4 305 1 222 389 69 0 chr1 120496149 120496280 -122168073 - L2 LINE L2 -86 3186 3047 945 90 90 42 chr1 120496301 120496348 -122168005 + L1PA14 LINE L1 5271 5314 -847 2262 114 0 0 chr1 120496348 120496645 -122167708 + AluSx SINE Alu 3 299 -13 945 90 90 42 chr1 120496645 120496786 -122167567 + L1PA14 LINE L1 5314 5468 -693 360 113 0 0 chr1 120496786 120496864 -122167489 - Alu SINE Alu 0 315 238 5029 97 1 20 chr1 120496866 120497234 -122167119 + L1PA14 LINE L1 5461 5811 -350 2358 96 3 0 chr1 120497234 120497536 -122166817 + AluSg SINE Alu 1 303 -7 5029 97 1 20 chr1 120497536 120497881 -122166472 + L1PA14 LINE L1 5811 6161 0 213 132 0 0 chr1 120497918 120497961 -122166392 + MIR SINE MIR 42 83 -179 312 286 33 0 chr1 120498050 120498141 -122166212 + MIR SINE MIR 71 164 -98 404 226 201 26 chr1 120499675 120499909 -122164444 - L1ME4a LINE L1 -249 5872 5598 209 299 198 12 chr1 120500257 120500424 -122163929 + MIR SINE MIR 58 255 -7 199 288 0 0 chr1 120500553 120500621 -122163732 + MIR SINE MIR 80 148 -60 213 146 0 24 chr1 120500695 120500736 -122163617 + (TAGG)n Simple_repeat Simple_repeat 2 41 0 218 291 13 25 chr1 120501187 120501266 -122163087 + MIR SINE MIR 43 120 -88 625 242 38 0 chr1 120504294 120504451 -122159902 - MIR3 SINE MIR -17 191 29 2047 127 0 35 chr1 120504634 120504948 -122159405 - AluSx SINE Alu -9 303 1 340 293 135 24 chr1 120505040 120505248 -122159105 - MIR SINE MIR -1 261 31 22 0 0 0 chr1 120505713 120505735 -122158618 + AT_rich Low_complexity Low_complexity 1 22 0 465 19 0 0 chr1 120507577 120507631 -122156722 + (TG)n Simple_repeat Simple_repeat 1 54 0 302 266 73 20 chr1 120507681 120507790 -122156563 + MIR SINE MIR 39 150 -66 3332 174 17 30 chr1 120508063 120508322 -122156031 - L1MB7 LINE L1 0 6184 5923 1913 126 65 0 chr1 120508322 120508599 -122155754 - AluSg SINE Alu -15 295 1 3332 174 17 30 chr1 120508599 120509028 -122155325 - L1MB7 LINE L1 -261 5923 5505 1164 131 31 0 chr1 120509029 120509293 -122155060 - L1MB7 LINE L1 -742 5442 5171 285 250 117 23 chr1 120509399 120509527 -122154826 - L2 LINE L2 -1 3271 3132 1694 139 24 44 chr1 120509621 120509915 -122154438 + AluJb SINE Alu 10 297 -15 275 0 0 28 chr1 120509923 120509959 -122154394 + (TAA)n Simple_repeat Simple_repeat 3 37 0 452 272 51 25 chr1 120510134 120510292 -122154061 - MIR SINE MIR -72 190 29 419 278 16 0 chr1 120511617 120511743 -122152610 + MIR SINE MIR 55 182 -80 293 155 0 52 chr1 120512728 120512786 -122151567 - MER103 DNA DNA -10 156 102 576 263 29 100 chr1 120513162 120513512 -122150841 - L2 LINE L2 -20 3252 2928 388 289 46 66 chr1 120513513 120513710 -122150643 - MLT1L LTR MaLR -3 612 420 236 226 83 60 chr1 120513860 120513944 -122150409 - MLT1K LTR MaLR -346 242 157 186 103 0 0 chr1 120513949 120513978 -122150375 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 295 125 0 0 chr1 120513979 120514019 -122150334 - MLT1L LTR MaLR -429 186 147 532 176 0 0 chr1 120514019 120514104 -122150249 - MER58B DNA MER1_type 0 341 257 21 0 0 0 chr1 120514119 120514140 -122150213 + AT_rich Low_complexity Low_complexity 1 21 0 1488 210 68 79 chr1 120514140 120514644 -122149709 - L1MA9 LINE L1 -38 6274 5777 323 279 0 12 chr1 120514652 120514738 -122149615 + L1MC4 LINE L1 6609 6693 -1349 25848 99 9 48 chr1 120514738 120521197 -122143156 - L1PA7 LINE L1 -2 6152 12 8990 180 23 21 chr1 120521209 120523667 -122140686 - L1MA9 LINE L1 -527 5785 3320 963 174 46 107 chr1 120523673 120523954 -122140399 - MER58B DNA MER1_type -77 264 1 1483 201 86 26 chr1 120524942 120525281 -122139072 + MLT1A1 LTR MaLR 1 359 -6 3640 182 14 22 chr1 120525289 120526025 -122138328 + MLT1A1-int LTR MaLR 2 731 -1004 638 330 89 35 chr1 120526080 120526428 -122137925 + MLT1A1-int LTR MaLR 975 1341 -394 521 265 50 28 chr1 120526475 120526505 -122137848 - MLT1A1 LTR MaLR 0 365 337 197 33 33 0 chr1 120526505 120526535 -122137818 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 521 265 50 28 chr1 120526535 120526685 -122137668 - MLT1A1 LTR MaLR -28 337 181 204 246 0 82 chr1 120526696 120526757 -122137596 - L2 LINE L2 -20 3293 3238 209 232 0 72 chr1 120526981 120527050 -122137303 + GA-rich Low_complexity Low_complexity 1 64 0 217 312 21 32 chr1 120527173 120527266 -122137087 - L2 LINE L2 -3 3269 3178 527 320 95 9 chr1 120527307 120527538 -122136815 - MIR SINE MIR 0 262 12 2107 253 60 29 chr1 120527611 120528367 -122135986 + L1MEd LINE L1 1 779 -5340 200 282 114 46 chr1 120528445 120528576 -122135777 - L2 LINE L2 -183 3089 2950 1844 146 69 37 chr1 120528579 120528614 -122135739 - MLT2D LTR ERVL 0 414 382 180 77 0 0 chr1 120528614 120528640 -122135713 + (TG)n Simple_repeat Simple_repeat 1 26 0 1844 146 69 37 chr1 120528640 120528981 -122135372 - MLT2D LTR ERVL -32 382 26 369 217 85 19 chr1 120529650 120529756 -122134597 + MIR3 SINE MIR 11 123 -85 1412 209 104 46 chr1 120530832 120531330 -122133023 - MLT1F LTR MaLR -10 532 6 248 283 100 46 chr1 120531446 120531714 -122132639 + L2 LINE L2 2763 3090 -182 723 301 45 39 chr1 120531745 120531944 -122132409 - L2 LINE L2 0 3313 3110 2378 111 0 0 chr1 120531944 120532250 -122132103 + AluSx SINE Alu 1 306 -6 723 301 45 39 chr1 120532250 120532405 -122131948 - L2 LINE L2 -203 3110 2957 233 314 57 73 chr1 120532412 120532536 -122131817 + L2 LINE L2 3115 3236 -36 198 0 0 0 chr1 120533937 120533959 -122130394 + (TAA)n Simple_repeat Simple_repeat 1 22 0 210 293 53 13 chr1 120534163 120534238 -122130115 + MIR SINE MIR 19 96 -112 263 254 36 64 chr1 120534305 120534415 -122129938 + MIR SINE MIR 106 212 -50 3455 135 78 30 chr1 120534443 120535005 -122129348 - L1MB3 LINE L1 -2 6181 5648 219 103 0 0 chr1 120535005 120535044 -122129309 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2401 69 0 3 chr1 120535046 120535334 -122129019 - AluY SINE Alu -24 287 1 3455 135 78 30 chr1 120535334 120535444 -122128909 - L1MB3 LINE L1 -535 5648 5473 275 95 0 0 chr1 120535480 120535522 -122128831 - L1MB3 LINE L1 -685 5486 5445 323 149 0 224 chr1 120535586 120535641 -122128712 + MER5A DNA MER1_type 95 116 -73 1824 185 0 3 chr1 120535641 120535944 -122128409 - AluJo SINE Alu -10 302 1 323 149 0 224 chr1 120535944 120535995 -122128358 + MER5A DNA MER1_type 116 177 -12 455 297 161 29 chr1 120536082 120536574 -122127779 + L2 LINE L2 2732 3291 -22 2630 53 0 0 chr1 120536578 120536877 -122127476 - AluY SINE Alu -12 299 1 511 137 34 94 chr1 120537075 120537192 -122127161 + MER20 DNA MER1_type 1 110 -109 462 229 83 73 chr1 120537188 120537380 -122126973 - MLT1A1 LTR MaLR -170 195 2 * 325 207 49 0 chr1 120537381 120537463 -122126890 + MER20 DNA MER1_type 119 204 -15 199 211 14 14 chr1 120537674 120537745 -122126608 + CT-rich Low_complexity Low_complexity 2 72 0 255 275 28 106 chr1 120539100 120539242 -122125111 + L2 LINE L2 3138 3268 -4 944 209 65 52 chr1 120541152 120541328 -122123025 + MER33 DNA MER1_type 1 173 -2412 1806 167 6 41 chr1 120541328 120541645 -122122708 + AluJb SINE Alu 1 306 -6 944 209 65 52 chr1 120541645 120541703 -122122650 + MER33 DNA MER1_type 173 229 -2356 2192 99 7 0 chr1 120541703 120542055 -122122298 - AluSx SINE Alu 0 354 1 944 209 65 52 chr1 120542055 120542124 -122122229 + MER33 DNA MER1_type 229 310 -14 264 100 0 0 chr1 120542128 120542168 -122122185 + (T)n Simple_repeat Simple_repeat 1 40 0 315 0 0 0 chr1 120542296 120542331 -122122022 + (A)n Simple_repeat Simple_repeat 1 35 0 259 119 0 0 chr1 120542331 120542373 -122121980 + L1MB1 LINE L1 6126 6167 -1 469 198 50 0 chr1 120542468 120542569 -122121784 - MIR SINE MIR -78 184 79 396 226 14 14 chr1 120542651 120542751 -122121602 - MIR SINE MIR -62 146 55 183 42 0 0 chr1 120542761 120542785 -122121568 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2176 124 7 13 chr1 120543842 120544149 -122120204 + AluSx SINE Alu 1 305 -7 180 382 49 39 chr1 120544234 120544336 -122120017 - L2 LINE L2 -31 3241 3139 829 276 48 43 chr1 120545095 120545487 -122118866 - L2 LINE L2 0 3313 2920 459 293 53 57 chr1 120546028 120546291 -122118062 + L2 LINE L2 2916 3177 -95 224 241 19 0 chr1 120550273 120550327 -122114026 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 495 281 88 12 chr1 120551078 120551249 -122113104 - MIR SINE MIR -31 231 48 468 287 90 0 chr1 120552219 120552341 -122112012 - L2 LINE L2 -3 3269 3137 612 274 11 23 chr1 120552779 120552954 -122111399 - MIR3 SINE MIR -13 195 23 231 368 0 21 chr1 120552957 120553052 -122111301 + MIR SINE MIR 21 113 -149 297 51 0 0 chr1 120553116 120553155 -122111198 + (CA)n Simple_repeat Simple_repeat 2 40 0 277 261 171 51 chr1 120554304 120554480 -122109873 + L3b LINE CR1 1303 1499 -84 1731 194 75 13 chr1 120554567 120554939 -122109414 + MSTD LTR MaLR 1 395 -1 227 343 20 76 chr1 120555506 120555757 -122108596 - L2 LINE L2 -187 3085 2849 2604 36 3 3 chr1 120555931 120556233 -122108120 - AluY SINE Alu -9 302 1 2434 80 0 19 chr1 120556255 120556569 -122107784 + AluSx SINE Alu 1 308 -4 525 277 88 29 chr1 120556821 120557059 -122107294 - L2 LINE L2 -817 2497 2246 301 267 112 47 chr1 120557193 120557425 -122106928 - L2 LINE L2 -1347 1967 1721 489 202 139 46 chr1 120557734 120557907 -122106446 - MIR SINE MIR -49 213 25 217 280 20 0 chr1 120558059 120558109 -122106244 + MIR3 SINE MIR 128 178 -30 21 0 0 0 chr1 120558556 120558577 -122105776 + AT_rich Low_complexity Low_complexity 1 21 0 490 258 239 0 chr1 120558989 120559152 -122105201 - MIR SINE MIR 0 262 61 264 365 47 0 chr1 120559473 120559643 -122104710 - L2 LINE L2 -576 2738 2561 524 288 60 16 chr1 120560470 120560654 -122103699 - MIR SINE MIR -35 227 36 226 329 51 13 chr1 120561144 120561223 -122103130 + L2 LINE L2 3153 3234 -38 2173 125 9 0 chr1 120561254 120561590 -122102763 + MER46B DNA MER2_type 11 224 -12 2603 73 0 3 chr1 120561665 120562022 -122102331 + AluSp SINE Alu 1 356 0 2611 49 0 3 chr1 120562140 120562447 -122101906 - AluY SINE Alu -5 306 1 595 257 61 2 chr1 120562449 120562613 -122101740 - MIR SINE MIR -60 148 30 525 217 32 104 chr1 120563168 120563389 -122100964 - L1ME3A LINE L1 -12 6158 5954 2376 105 3 10 chr1 120564424 120564738 -122099615 + AluSx SINE Alu 1 312 0 26 0 0 0 chr1 120565054 120565080 -122099273 + AT_rich Low_complexity Low_complexity 1 26 0 1056 215 0 15 chr1 120565106 120565311 -122099042 - MIR SINE MIR 0 262 61 813 309 92 34 chr1 120565443 120565854 -122098499 - L2 LINE L2 -5 3308 2874 2259 126 7 0 chr1 120566026 120566336 -122098017 + AluSx SINE Alu 1 312 0 526 213 0 8 chr1 120566344 120566466 -122097887 + Charlie4a DNA MER1_type 61 181 -327 357 241 267 5 chr1 120566478 120566665 -122097688 + Charlie4a DNA MER1_type 267 502 -6 2287 96 3 7 chr1 120566669 120566971 -122097382 + AluSx SINE Alu 1 301 -11 197 400 0 0 chr1 120566988 120567063 -122097290 - L2 LINE L2 -583 2731 2657 540 196 126 21 chr1 120567101 120567244 -122097109 - MIR SINE MIR -73 189 32 453 158 0 0 chr1 120567701 120567783 -122096570 + (TG)n Simple_repeat Simple_repeat 2 83 0 307 349 9 0 chr1 120568884 120568990 -122095363 + MIR SINE MIR 50 156 -106 753 230 120 5 chr1 120569096 120569296 -122095057 - MIR SINE MIR 0 262 40 660 246 65 10 chr1 120569720 120569919 -122094434 - MIR SINE MIR -16 246 37 254 299 75 35 chr1 120570035 120570209 -122094144 - L2 LINE L2 -1351 1963 1783 1233 183 42 4 chr1 120570257 120570498 -122093855 + MIR SINE MIR 9 258 -4 546 335 24 63 chr1 120570577 120571040 -122093313 + L2 LINE L2 2805 3249 -23 2185 138 3 0 chr1 120571420 120571757 -122092596 - AluSq SINE Alu 0 338 1 242 261 92 0 chr1 120571873 120571938 -122092415 - MIR SINE MIR -107 101 31 306 280 74 51 chr1 120572027 120572198 -122092155 - MIR SINE MIR -57 205 35 304 303 0 0 chr1 120572409 120572485 -122091868 + MIR SINE MIR 47 122 -140 195 42 0 0 chr1 120572487 120572511 -122091842 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 196 339 118 31 chr1 120572563 120572690 -122091663 + MIR SINE MIR 115 252 -10 476 300 19 43 chr1 120573215 120573425 -122090928 + MIR SINE MIR 1 205 -57 676 298 64 71 chr1 120573436 120573721 -122090632 - L2 LINE L2 -3 3269 2984 661 264 77 5 chr1 120573721 120573929 -122090424 - MER58A DNA MER1_type 0 224 2 676 298 64 71 chr1 120573929 120574351 -122090002 - L2 LINE L2 -288 2984 2556 214 299 58 11 chr1 120574347 120574434 -122089919 - MIR SINE MIR -85 123 33 * 273 352 19 0 chr1 120575316 120575424 -122088929 + MIR SINE MIR 46 155 -107 1024 222 0 10 chr1 120575483 120575686 -122088667 - MER63A DNA MER1_type 0 210 10 310 189 0 0 chr1 120575779 120575832 -122088521 - MER5A DNA MER1_type -74 115 63 269 130 278 0 chr1 120575879 120575933 -122088420 - MER5A DNA MER1_type -113 76 8 544 241 37 37 chr1 120576051 120576213 -122088140 - MIR SINE MIR -51 211 50 350 242 92 33 chr1 120576256 120576376 -122087977 + MER91A DNA MER1_type 70 196 0 474 307 108 9 chr1 120577485 120577697 -122086656 + MIR SINE MIR 20 252 -10 320 251 1 58 chr1 120578089 120578208 -122086145 + MIR SINE MIR 33 146 -62 216 179 0 0 chr1 120578835 120578874 -122085479 + (TATG)n Simple_repeat Simple_repeat 2 40 0 900 157 0 0 chr1 120578886 120579020 -122085333 + FLAM_C SINE Alu 1 134 -9 254 167 0 0 chr1 120579158 120579206 -122085147 + L1MB1 LINE L1 6093 6140 -28 1969 97 111 4 chr1 120579206 120579485 -122084868 + AluSg1 SINE Alu 1 309 0 207 0 0 0 chr1 120579619 120579642 -122084711 + (A)n Simple_repeat Simple_repeat 1 23 0 187 243 0 0 chr1 120579658 120579695 -122084658 + L2 LINE L2 3225 3261 -11 694 286 70 0 chr1 120580708 120580921 -122083432 + MIR SINE MIR 9 236 -26 627 306 55 55 chr1 120581705 120582123 -122082230 - L2 LINE L2 -25 3288 2871 531 267 89 30 chr1 120582759 120582961 -122081392 - MIR SINE MIR -10 252 39 245 355 129 31 chr1 120583003 120583438 -122080915 + L2 LINE L2 2205 2596 -676 921 189 22 0 chr1 120583438 120583623 -122080730 - MER5A DNA MER1_type 0 189 1 245 355 129 31 chr1 120583623 120583957 -122080396 + L2 LINE L2 2596 3047 -225 482 266 112 75 chr1 120583959 120584200 -122080153 + MIR SINE MIR 13 262 0 294 274 150 9 chr1 120584464 120584577 -122079776 - MER91A DNA MER1_type -66 130 2 226 281 70 65 chr1 120585518 120585717 -122078636 + L2 LINE L2 3073 3272 0 447 137 0 0 chr1 120585729 120585802 -122078551 + (T)n Simple_repeat Simple_repeat 1 73 0 225 204 23 0 chr1 120685892 120685936 -121978417 - MER5A DNA MER1_type -83 106 62 6086 148 20 13 chr1 120685939 120687237 -121977116 - L1MA8 LINE L1 0 6291 4981 314 304 46 77 chr1 120687365 120687559 -121976794 + MER5A DNA MER1_type 1 188 -1 183 158 0 197 chr1 120689000 120689076 -121975277 - L2 LINE L2 -3 3269 3209 * 842 226 38 51 chr1 120689047 120689282 -121975071 - MIR SINE MIR -29 233 2 316 336 68 86 chr1 120689289 120689581 -121974772 - L2 LINE L2 -21 3251 2965 650 328 144 23 chr1 120689610 120690132 -121974221 - L2 LINE L2 -465 2849 2265 564 307 129 47 chr1 120690206 120690633 -121973720 - L3 LINE CR1 -93 1484 1023 208 303 41 34 chr1 120690813 120691002 -121973351 + MIR SINE MIR 24 212 -50 235 260 13 13 chr1 120693320 120693397 -121970956 + L2 LINE L2 3190 3266 -6 2317 113 3 0 chr1 120694760 120695069 -121969284 - AluSx SINE Alu -2 310 1 254 250 0 58 chr1 120695135 120695239 -121969114 + LTR67 LTR ERVL 457 554 -3 854 263 83 0 chr1 120695280 120695497 -121968856 - MIR SINE MIR -25 237 3 792 291 169 38 chr1 120695585 120696084 -121968269 - L2 LINE L2 -2 3311 2739 1309 270 93 17 chr1 120696741 120697212 -121967141 + L2 LINE L2 2807 3313 0 706 182 130 22 chr1 120697511 120697707 -121966646 + MER34B LTR ERV1 1 196 -369 347 270 88 36 chr1 120697870 120698007 -121966346 - MIR SINE MIR -111 151 8 248 450 0 0 chr1 120698444 120698555 -121965798 + MER91A DNA MER1_type 86 196 0 442 317 38 16 chr1 120698585 120698768 -121965585 - MIR SINE MIR -10 252 66 873 174 68 32 chr1 120698970 120699189 -121965164 - MER20B DNA MER1_type -47 736 510 2102 231 68 6 chr1 120699556 120700526 -121963827 - L1MB3 LINE L1 -220 6605 5562 * 10765 163 13 10 chr1 120700519 120702722 -121961631 - L1PA12 LINE L1 -2454 5130 2934 387 0 0 0 chr1 120702722 120702765 -121961588 + (TA)n Simple_repeat Simple_repeat 1 43 0 2258 109 3 0 chr1 120702766 120703059 -121961294 - AluSq SINE Alu -19 294 1 10765 163 13 10 chr1 120703059 120704130 -121960223 - L1PA12 LINE L1 -4649 2935 1832 6852 213 37 35 chr1 120704129 120707075 -121957278 - L1MB3 LINE L1 -4325 2464 9 * 286 264 0 0 chr1 120707134 120707187 -121957166 - Tigger3(Golem) DNA MER2_type -2975 54 2 3163 128 73 39 chr1 120707504 120708060 -121956293 + L1M3f LINE L1 608 1189 -4139 2185 120 0 3 chr1 120708060 120708359 -121955994 + AluSx SINE Alu 11 308 -4 3163 128 73 39 chr1 120708359 120708419 -121955934 + L1M3f LINE L1 1189 1245 -4083 * 44157 39 3 3 chr1 120708417 120714568 -121949785 + L1PA3 LINE L1 3 6155 0 485 206 53 94 chr1 120714674 120714844 -121949509 + MIR SINE MIR 46 208 -54 1747 225 28 2 chr1 120715088 120715511 -121948842 + L1M3f LINE L1 1216 1649 -4679 247 197 164 0 chr1 120715511 120715572 -121948781 + MLT1J2 LTR MaLR 98 168 -282 3459 164 29 2 chr1 120715679 120716239 -121948114 - L1M3f LINE L1 -4751 577 3 280 250 36 18 chr1 120716235 120716347 -121948006 - L1MEd LINE L1 -5111 1008 895 * 22 35 0 0 chr1 120716418 120716447 -121947906 + AT_rich Low_complexity Low_complexity 1 29 0 1868 155 18 24 chr1 120717999 120718382 -121945971 + Tigger3(Golem) DNA MER2_type 1 3028 -1 598 264 83 21 chr1 120718603 120718796 -121945557 - MER20B DNA MER1_type -572 211 7 323 223 80 36 chr1 120719080 120719192 -121945161 - MIR SINE MIR -36 226 110 207 152 0 0 chr1 120720807 120720853 -121943500 + T-rich Low_complexity Low_complexity 1 46 0 266 324 74 34 chr1 120722024 120722172 -121942181 - L2 LINE L2 -2 3311 3158 559 227 8 8 chr1 120722183 120722302 -121942051 + MER94 DNA DNA 1 119 -15 589 279 137 28 chr1 120722316 120722616 -121941737 - L2 LINE L2 -183 3130 2791 202 308 128 15 chr1 120722650 120722783 -121941570 - MIR3 SINE MIR -15 193 46 198 0 0 0 chr1 120722885 120722907 -121941446 + (CTTTG)n Simple_repeat Simple_repeat 5 26 0 200 273 182 17 chr1 120723643 120723785 -121940568 - MIR SINE MIR -70 192 18 723 281 83 9 chr1 120723831 120724059 -121940294 + MIR SINE MIR 17 261 -1 200 287 52 52 chr1 120724096 120724211 -121940142 - L2 LINE L2 -1 3312 3198 180 0 0 0 chr1 120724361 120724381 -121939972 + (T)n Simple_repeat Simple_repeat 1 20 0 290 282 26 0 chr1 120725088 120725166 -121939187 - L2 LINE L2 -10 3303 3224 2217 106 0 7 chr1 120727278 120727581 -121936772 - AluSg SINE Alu -9 301 1 16465 122 18 19 chr1 120727948 120730370 -121933983 - Tigger1 DNA MER2_type 0 2418 1 25 31 0 0 chr1 120731011 120731043 -121933310 + AT_rich Low_complexity Low_complexity 1 32 0 183 364 0 15 chr1 120731170 120731236 -121933117 - MIR SINE MIR -193 69 5 371 330 62 0 chr1 120731297 120731491 -121932862 + MIR SINE MIR 1 206 -56 243 244 33 0 chr1 120731654 120731744 -121932609 + (TTATA)n Simple_repeat Simple_repeat 4 96 0 6263 126 17 12 chr1 120732915 120733874 -121930479 - LTR5 LTR ERVK -1 968 6 2207 116 3 3 chr1 120734198 120734492 -121929861 - AluSq SINE Alu -19 294 1 4615 56 36 25 chr1 120734534 120734609 -121929744 - L1PA6 LINE L1 -1 6153 6080 3554 198 33 54 chr1 120734609 120735578 -121928775 - LTR5 LTR ERVK 0 969 21 4615 56 36 25 chr1 120735578 120736106 -121928247 - L1PA6 LINE L1 -74 6080 5543 780 278 202 6 chr1 120737175 120737502 -121926851 + L2 LINE L2 2921 3311 -2 243 208 31 62 chr1 120737554 120737650 -121926703 + LTR67 LTR ERVL 459 551 -6 3553 124 26 0 chr1 120737764 120738264 -121926089 - LTR10D LTR ERV1 0 513 1 264 341 92 12 chr1 120740660 120740833 -121923520 - MER117 DNA MER1_type -6 191 5 256 227 50 151 chr1 120740968 120741206 -121923147 - MIR SINE MIR -47 215 2 466 223 19 10 chr1 120741384 120741487 -121922866 + MIR3 SINE MIR 86 189 -19 252 281 0 0 chr1 120741544 120741608 -121922745 + GA-rich Low_complexity Low_complexity 4 67 0 243 0 0 0 chr1 120742824 120742851 -121921502 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2000 153 107 18 chr1 120743169 120743561 -121920792 + MSTA LTR MaLR 2 428 0 190 222 0 0 chr1 120743584 120743629 -121920724 + L2 LINE L2 3269 3313 0 1759 184 81 28 chr1 120743688 120744047 -121920306 - MLT1F LTR MaLR -2 540 163 241 208 0 0 chr1 120744096 120744144 -121920209 - L2 LINE L2 -87 3185 3138 225 167 130 19 chr1 120744279 120744333 -121920020 + L2 LINE L2 3197 3256 -16 25 31 0 0 chr1 120745151 120745183 -121919170 + AT_rich Low_complexity Low_complexity 1 32 0 13232 136 168 31 chr1 120745198 120746865 -121917488 + L1MA3 LINE L1 16 2133 -5432 2038 133 0 31 chr1 120746865 120747187 -121917166 - AluSx SINE Alu 0 312 1 13232 136 168 31 chr1 120747187 120747983 -121916370 + L1MA3 LINE L1 2133 2818 -4747 12578 154 59 6 chr1 120747978 120751530 -121912823 + L1MA3 LINE L1 3978 7724 0 * 2379 181 46 123 chr1 120752040 120752763 -121911590 - L1PB2 LINE L1 -2 6149 5483 2471 68 10 0 chr1 120752965 120753273 -121911080 - AluY SINE Alu 0 311 1 220 206 56 112 chr1 120758072 120758179 -121906174 + L2 LINE L2 3153 3253 -19 254 256 83 77 chr1 120758188 120758344 -121906009 - L2 LINE L2 -24 3289 3133 421 261 161 84 chr1 120758428 120758689 -121905664 - L2 LINE L2 -5 3267 2987 489 279 70 65 chr1 120759188 120759344 -121905009 + MIR SINE MIR 46 205 -57 2142 124 0 3 chr1 120759344 120759642 -121904711 + AluSx SINE Alu 1 297 -15 489 279 70 65 chr1 120759642 120759686 -121904667 + MIR SINE MIR 205 247 -15 313 303 50 25 chr1 120760651 120760795 -121903558 + MIR SINE MIR 4 151 -62 2406 76 0 3 chr1 120761025 120761326 -121903027 - AluY SINE Alu -11 300 1 548 276 74 42 chr1 120762016 120762233 -121902120 + L3 LINE CR1 1175 1398 -179 288 0 0 0 chr1 120763493 120763525 -121900828 + (CA)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr1 120763525 120763549 -121900804 + (CCA)n Simple_repeat Simple_repeat 3 26 0 435 206 21 10 chr1 120763707 120763804 -121900549 + MIR3 SINE MIR 93 190 -18 205 237 0 0 chr1 120765479 120765517 -121898836 + polypyrimidine Low_complexity Low_complexity 2 39 0 292 209 198 25 chr1 120765813 120765955 -121898398 + MIR SINE MIR 40 214 -48 195 270 30 40 chr1 120766131 120766231 -121898122 - L2 LINE L2 -75 3238 3140 2551 247 79 44 chr1 120766787 120767621 -121896732 - MER21B LTR ERV1 0 863 1 682 113 97 32 chr1 120767783 120767907 -121896446 - Tigger5 DNA MER2_type 0 2323 2192 265 291 58 0 chr1 120768253 120768339 -121896014 - MLT1J LTR MaLR -116 395 305 186 71 0 0 chr1 120770214 120770242 -121894111 + (T)n Simple_repeat Simple_repeat 1 28 0 796 259 105 48 chr1 120771125 120771545 -121892808 + L2 LINE L2 2805 3248 -65 2598 68 0 0 chr1 120771585 120771895 -121892458 + AluSg SINE Alu 1 310 0 933 218 36 5 chr1 120772355 120772548 -121891805 + MER20 DNA MER1_type 20 218 -1 490 296 49 57 chr1 120772838 120773102 -121891251 - MIR SINE MIR 0 262 1 231 261 143 64 chr1 120773122 120773325 -121891028 - L2 LINE L2 -240 3032 2814 29 0 0 0 chr1 120773735 120773764 -121890589 + AT_rich Low_complexity Low_complexity 1 29 0 1930 19 0 0 chr1 120773935 120774145 -121890208 - AluYb8 SINE Alu -108 210 1 6487 69 8 2 chr1 120774147 120775006 -121889347 - L1P LINE L1 -1602 4544 3681 715 60 0 77 chr1 120775027 120775173 -121889180 - L1PA5 LINE L1 0 6154 6045 5641 65 1 3 chr1 120775176 120775901 -121888452 + L1PA3 LINE L1 5424 6147 -8 1754 155 14 0 chr1 120775969 120776246 -121888107 + AluSx SINE Alu 1 281 -31 297 0 0 0 chr1 120776249 120776282 -121888071 + (CA)n Simple_repeat Simple_repeat 2 34 0 1385 196 7 21 chr1 120776465 120776746 -121887607 - AluJo SINE Alu -35 277 1 260 283 20 0 chr1 120776752 120776851 -121887502 - L1M4 LINE L1 -2624 3522 3422 4256 113 29 0 chr1 120776865 120777483 -121886870 - HSMAR2 DNA Mariner -665 637 2 1023 243 22 11 chr1 120777486 120777758 -121886595 - L1M4 LINE L1 -2362 3784 3510 2153 116 0 3 chr1 120777807 120778127 -121886226 + AluSx SINE Alu 1 319 0 280 333 9 19 chr1 120778372 120778480 -121885873 + MIR SINE MIR 28 134 -128 1205 170 4 48 chr1 120778484 120778713 -121885640 + MER20 DNA MER1_type 1 219 0 577 272 71 0 chr1 120778913 120779082 -121885271 + MIR SINE MIR 4 184 -78 441 280 40 51 chr1 120779331 120779506 -121884847 - MIR SINE MIR -70 192 20 205 245 0 0 chr1 120779966 120780015 -121884338 + GA-rich Low_complexity Low_complexity 1 49 0 385 243 34 68 chr1 120782033 120782181 -121882172 + MIR SINE MIR 42 184 -78 225 0 0 0 chr1 120782378 120782403 -121881950 + (TG)n Simple_repeat Simple_repeat 2 26 0 646 188 53 88 chr1 120782480 120782650 -121881703 - AluJb SINE Alu -20 292 129 230 286 0 29 chr1 120783881 120783951 -121880402 - MIR SINE MIR -160 102 35 38565 87 8 6 chr1 120784078 120790206 -121874147 + L1PA6 LINE L1 11 6148 -6 244 148 19 19 chr1 120790944 120790998 -121873355 - HSMAR1 DNA Mariner 0 1287 1234 2362 85 14 0 chr1 120792088 120792383 -121871970 - AluSq SINE Alu -14 299 1 2106 126 3 3 chr1 120793843 120794144 -121870209 - AluSq SINE Alu -12 301 1 224 200 0 0 chr1 120794289 120794329 -121870024 + (TG)n Simple_repeat Simple_repeat 2 41 0 257 143 130 78 chr1 120794403 120794480 -121869873 + MLT1K LTR MaLR 506 586 -2 436 313 8 8 chr1 120794487 120794618 -121869735 - MIR SINE MIR -112 150 20 742 265 29 34 chr1 120795040 120795139 -121869214 + MIR SINE MIR 3 101 -161 1941 171 55 0 chr1 120795139 120795467 -121868886 - MER7A DNA MER2_type -2 344 1 742 265 29 34 chr1 120795467 120795605 -121868748 + MIR SINE MIR 101 239 -23 348 244 84 17 chr1 120795666 120795785 -121868568 - LTR16C LTR ERVL 0 491 365 698 256 128 33 chr1 120796166 120796568 -121867785 + L1M4 LINE L1 4786 5233 -913 1026 191 102 30 chr1 120796579 120796815 -121867538 + LTR41 LTR ERVL 9 261 -512 1272 184 58 11 chr1 120797318 120797595 -121866758 + L1M4 LINE L1 5313 5602 -572 729 288 172 12 chr1 120797611 120798134 -121866219 - L2 LINE L2 -186 3127 2525 4433 197 27 32 chr1 120798139 120799152 -121865201 - L1MC4a LINE L1 -206 7602 6595 42 20 0 0 chr1 120799183 120799232 -121865121 + AT_rich Low_complexity Low_complexity 1 49 0 929 196 46 51 chr1 120799232 120799569 -121864784 - L1MC4a LINE L1 -1189 6619 6410 * 6484 147 13 17 chr1 120799564 120801132 -121863221 + L1PA14 LINE L1 4130 5687 -474 1437 164 0 4 chr1 120801162 120801393 -121862960 + AluJb SINE Alu 70 299 -13 3064 111 2 40 chr1 120801395 120801549 -121862804 + L1PA14 LINE L1 5675 5833 -328 2586 55 0 3 chr1 120801549 120801858 -121862495 + AluY SINE Alu 1 308 -3 3064 111 2 40 chr1 120801858 120802200 -121862153 + L1PA14 LINE L1 5833 6152 -9 994 191 30 26 chr1 120802215 120802446 -121861907 - L1MC4a LINE L1 -1390 6418 6187 189 0 0 0 chr1 120802551 120802572 -121861781 + (TATG)n Simple_repeat Simple_repeat 4 24 0 838 243 138 52 chr1 120802912 120803319 -121861034 + LTR40b LTR ERVL 13 454 -8 1184 171 38 14 chr1 120803700 120803911 -121860442 - AluJb SINE Alu -10 302 87 220 252 185 0 chr1 120806330 120806465 -121857888 - MIR SINE MIR -3 259 100 331 285 118 56 chr1 120806859 120807003 -121857350 + MIR SINE MIR 2 154 -108 2032 136 3 18 chr1 120807039 120807371 -121856982 + L1MB3 LINE L1 5834 6160 -23 232 333 13 0 chr1 120807398 120807473 -121856880 + MIR SINE MIR 185 260 -2 184 302 48 16 chr1 120807662 120807725 -121856628 - MIR SINE MIR -123 85 21 242 250 13 26 chr1 120807760 120807836 -121856517 + MIR SINE MIR 74 148 -60 710 213 80 84 chr1 120807863 120807933 -121856420 - LTR40a LTR ERVL -7 512 443 279 114 0 0 chr1 120807933 120807977 -121856376 + (CA)n Simple_repeat Simple_repeat 2 45 0 710 213 80 84 chr1 120807977 120808192 -121856161 - LTR40a LTR ERVL -76 443 228 236 241 58 73 chr1 120808282 120808419 -121855934 + LTR68 LTR ERV1 606 740 0 226 184 0 0 chr1 120808419 120808457 -121855896 + MIR3 SINE MIR 159 196 -12 180 362 85 11 chr1 120809111 120809205 -121855148 + MER5A DNA MER1_type 89 189 0 616 167 18 71 chr1 120811093 120811261 -121853092 + L1MC5 LINE L1 7751 7909 -52 352 316 23 7 chr1 120812361 120812537 -121851816 - MIR SINE MIR -21 241 64 200 264 64 18 chr1 120814293 120814403 -121849950 + MIR SINE MIR 25 139 -69 249 343 9 9 chr1 120815834 120815942 -121848411 + GA-rich Low_complexity Low_complexity 1 108 0 453 254 35 0 chr1 120816063 120816177 -121848176 - L2 LINE L2 -8 3305 3188 358 323 179 6 chr1 120816277 120816596 -121847757 - L2 LINE L2 -12 3260 2887 329 196 319 29 chr1 120817687 120817825 -121846528 - MER5B DNA MER1_type 0 178 1 501 17 0 0 chr1 120818114 120818172 -121846181 + (CA)n Simple_repeat Simple_repeat 2 59 0 539 314 24 5 chr1 120818450 120818657 -121845696 + MIR SINE MIR 52 262 0 380 270 26 9 chr1 120818850 120818965 -121845388 - Charlie8 DNA MER1_type -2188 229 113 405 0 0 0 chr1 120819100 120819145 -121845208 + (TA)n Simple_repeat Simple_repeat 2 46 0 353 376 63 24 chr1 120820821 120821026 -121843327 + L3 LINE CR1 401 613 -964 397 246 117 84 chr1 120821297 120821476 -121842877 + L1ME LINE L1 5613 5797 -324 864 203 66 6 chr1 120821493 120821666 -121842687 + MER20 DNA MER1_type 1 184 -35 451 129 0 0 chr1 120821666 120821728 -121842625 - Tigger5 DNA MER2_type 0 2323 2262 1882 67 0 0 chr1 120821736 120821961 -121842392 + L1PA8 LINE L1 5941 6165 -7 293 224 0 0 chr1 120821966 120822024 -121842329 + Tigger5 DNA MER2_type 2262 2319 -4 380 227 0 0 chr1 120822068 120822134 -121842219 - Tigger5 DNA MER2_type -2257 66 1 235 245 0 0 chr1 120822655 120822704 -121841649 + MIR3 SINE MIR 148 196 -12 1732 159 17 17 chr1 120823786 120824075 -121840278 + AluJo SINE Alu 1 289 -23 2545 321 55 30 chr1 120824107 120824775 -121839578 + ERVL LTR ERVL 1599 2249 -3515 188 67 33 0 chr1 120824775 120824805 -121839548 + (TG)n Simple_repeat Simple_repeat 2 32 0 2545 321 55 30 chr1 120824805 120824835 -121839518 + ERVL LTR ERVL 2249 2277 -3487 243 0 0 0 chr1 120824835 120824862 -121839491 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2545 321 55 30 chr1 120824862 120825317 -121839036 + ERVL LTR ERVL 2277 2781 -2983 1195 334 40 32 chr1 120825312 120825994 -121838359 + ERVL LTR ERVL 4722 5408 -356 * 250 248 132 23 chr1 120826471 120826600 -121837753 + LTR33 LTR ERVL 359 501 -20 322 136 68 0 chr1 120826611 120826670 -121837683 + L1MA9 LINE L1 6228 6290 -22 1796 144 20 17 chr1 120826671 120826963 -121837390 - AluJb SINE Alu -19 293 1 432 269 248 0 chr1 120827250 120827399 -121836954 - MER5A DNA MER1_type 0 189 4 1268 158 73 4 chr1 120827438 120827685 -121836668 + L1MB3 LINE L1 5894 6157 -26 2074 99 67 0 chr1 120829598 120829880 -121834473 + AluSq SINE Alu 1 301 -12 199 286 67 59 chr1 120831875 120831994 -121832359 - MIR3 SINE MIR -46 162 43 419 230 267 0 chr1 120833094 120833255 -121831098 + MIR SINE MIR 10 213 -49 705 260 224 4 chr1 120834748 120834998 -121829355 + Charlie2 DNA MER1_type 2 306 -2556 741 206 20 49 chr1 120835174 120835378 -121828975 + Charlie2a DNA MER1_type 1470 1667 -1195 601 211 75 0 chr1 120835381 120835514 -121828839 + Charlie2a DNA MER1_type 2720 2862 0 929 119 8 8 chr1 120835788 120835922 -121828431 + AluJo SINE Alu 1 134 -178 1953 131 7 10 chr1 120836084 120836382 -121827971 - AluSx SINE Alu -15 297 1 881 65 19 0 chr1 120837108 120837215 -121827138 + HY1 scRNA scRNA 1 109 -3 201 255 0 0 chr1 120837220 120837267 -121827086 + GA-rich Low_complexity Low_complexity 4 50 0 251 241 214 18 chr1 120840620 120840732 -121823621 - L2 LINE L2 0 3313 3180 440 241 278 5 chr1 120840741 120840928 -121823425 + MIR SINE MIR 12 249 -13 998 291 263 15 chr1 120841212 120841884 -121822469 + L2 LINE L2 2454 3301 -12 1465 137 60 70 chr1 120842145 120842445 -121821908 + AluJb SINE Alu 1 297 -15 1798 139 23 40 chr1 120842596 120842897 -121821456 + AluSg SINE Alu 1 296 -14 222 239 104 30 chr1 120842898 120842965 -121821388 - L2 LINE L2 -668 2646 2575 1020 204 18 44 chr1 120843019 120843244 -121821109 + MER20 DNA MER1_type 1 219 0 311 299 119 79 chr1 120843247 120843625 -121820728 + L3 LINE CR1 661 1053 -524 247 185 37 0 chr1 120843612 120843666 -121820687 + L2 LINE L2 3258 3313 0 * 209 306 74 74 chr1 120843666 120843774 -121820579 + L3 LINE CR1 1051 1158 -419 266 328 69 35 chr1 120843828 120844002 -121820351 + L3 LINE CR1 1317 1496 -81 * 707 248 77 39 chr1 120843995 120844229 -121820124 - MIR SINE MIR -1 261 19 192 286 43 29 chr1 120844252 120844322 -121820031 + L3 LINE CR1 1457 1527 -50 1549 128 60 14 chr1 120844733 120845049 -121819304 - AluJb SINE Alu 0 312 4 487 266 82 11 chr1 120845181 120845365 -121818988 - L2 LINE L2 -19 3294 3098 201 298 170 0 chr1 120846115 120846256 -121818097 - MIR SINE MIR -96 166 2 241 338 120 39 chr1 120847135 120847369 -121816984 + L3 LINE CR1 1176 1428 -149 788 205 19 12 chr1 120847462 120847623 -121816730 + AluJb SINE Alu 123 284 -28 264 30 0 0 chr1 120847623 120847656 -121816697 + (CA)n Simple_repeat Simple_repeat 2 34 0 243 293 104 55 chr1 120847963 120848127 -121816226 + MER5A DNA MER1_type 14 185 -4 438 271 64 83 chr1 120848312 120848530 -121815823 - L2 LINE L2 -3 3310 3097 896 101 34 0 chr1 120848534 120848653 -121815700 + FLAM_C SINE Alu 1 123 -20 719 302 48 9 chr1 120848658 120848990 -121815363 - L2 LINE L2 -226 3087 2739 720 278 79 4 chr1 120849074 120849301 -121815052 + MIR SINE MIR 19 262 0 1896 159 3 0 chr1 120850193 120850489 -121813864 + AluJo SINE Alu 1 297 -15 2170 116 0 3 chr1 120851928 120852229 -121812124 + AluSx SINE Alu 1 300 -12 2183 169 61 8 chr1 120852242 120852750 -121811603 + L1MB3 LINE L1 5472 6169 -14 181 233 181 26 chr1 120853057 120853173 -121811180 - L2 LINE L2 -4 3309 3176 798 210 230 8 chr1 120853279 120853527 -121810826 - MLT2F LTR ERVL -7 656 354 672 170 104 0 chr1 120853650 120853785 -121810568 - MLT2F LTR ERVL -514 149 1 30 0 0 0 chr1 120854023 120854053 -121810300 + AT_rich Low_complexity Low_complexity 1 30 0 2084 92 0 0 chr1 120854056 120854328 -121810025 - AluY SINE Alu -3 308 37 189 177 25 89 chr1 120854369 120854448 -121809905 + L3b LINE CR1 1313 1386 -197 309 291 100 71 chr1 120854867 120855194 -121809159 - L2 LINE L2 -171 3101 2748 415 206 28 92 chr1 120855251 120855392 -121808961 - MER58C DNA MER1_type -5 210 79 301 335 158 21 chr1 120855395 120855915 -121808438 - L2 LINE L2 -658 2656 2066 373 244 79 24 chr1 120855915 120856079 -121808274 - L1MEc LINE L1 -3225 2990 2818 1202 152 76 31 chr1 120856098 120856406 -121807947 + MER58B DNA MER1_type 1 341 0 690 302 58 49 chr1 120856428 120857103 -121807250 - L1MEc LINE L1 -3435 2780 2144 476 272 49 88 chr1 120857176 120857293 -121807060 - L1MEc LINE L1 -5053 1152 1032 1255 201 28 113 chr1 120857293 120857692 -121806661 - MLT1A1 LTR MaLR 0 365 1 476 272 49 88 chr1 120857692 120858063 -121806290 - L1MEc LINE L1 -5173 1032 683 2542 235 52 28 chr1 120858239 120858818 -121805535 + MLT1E LTR MaLR 1 593 0 227 244 84 59 chr1 120858870 120858989 -121805364 - L1MEc LINE L1 -5768 437 316 653 277 58 52 chr1 120859245 120859592 -121804761 + L2 LINE L2 1900 2248 -1066 724 142 18 0 chr1 120859684 120859797 -121804556 + FLAM_A SINE Alu 28 142 0 391 286 47 57 chr1 120859803 120860093 -121804260 - MLT1J2 LTR MaLR -40 410 80 329 321 159 45 chr1 120860155 120860876 -121803477 + L2 LINE L2 2250 3054 -218 312 323 102 8 chr1 120861024 120861151 -121803202 + L2 LINE L2 3134 3272 0 439 335 50 79 chr1 120861261 120862040 -121802313 + L2 LINE L2 2516 3272 0 184 365 0 0 chr1 120862050 120862124 -121802229 + L2 LINE L2 2424 2497 -817 198 0 0 0 chr1 120862434 120862456 -121801897 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 763 213 7 0 chr1 120862458 120862594 -121801759 - FRAM SINE Alu -42 134 1 435 269 77 49 chr1 120862778 120863064 -121801289 + L2 LINE L2 2943 3236 -77 2233 122 6 0 chr1 120863112 120863423 -121800930 + AluSp SINE Alu 1 313 0 33 25 0 0 chr1 120863479 120863519 -121800834 + AT_rich Low_complexity Low_complexity 1 40 0 2490 50 0 7 chr1 120863846 120864144 -121800209 + AluY SINE Alu 1 296 -15 21 36 0 0 chr1 120864855 120864883 -121799470 + AT_rich Low_complexity Low_complexity 1 28 0 436 278 60 43 chr1 120865324 120865605 -121798748 + L1ME4a LINE L1 5649 5934 -187 313 311 40 33 chr1 120868962 120869113 -121795240 + MIR SINE MIR 50 201 -61 906 296 78 40 chr1 120869347 120870357 -121793996 + L1MC4a LINE L1 4599 5650 -743 903 229 75 9 chr1 120870418 120870645 -121793708 - MIR SINE MIR -13 249 8 316 281 173 0 chr1 120870647 120870786 -121793567 + L1MC4a LINE L1 5707 5869 -1939 1714 199 0 0 chr1 120871405 120871687 -121792666 + AluJo SINE Alu 3 284 -28 308 330 7 65 chr1 120871700 120871861 -121792492 - MIR SINE MIR -73 135 4 270 0 0 0 chr1 120871998 120872028 -121792325 + (A)n Simple_repeat Simple_repeat 1 30 0 199 344 56 22 chr1 120874525 120874615 -121789738 + L2 LINE L2 3127 3219 -53 264 179 67 3 chr1 120874674 120874750 -121789603 - MIR SINE MIR -61 147 68 519 68 0 14 chr1 120875396 120875469 -121788884 + AluSc SINE Alu 177 248 -61 992 181 5 25 chr1 120875469 120875668 -121788685 + AluJo SINE Alu 85 279 -33 265 203 27 54 chr1 120876633 120876707 -121787646 + LTR67 LTR ERVL 478 549 -8 674 313 10 0 chr1 120877091 120877283 -121787070 + MER91A DNA MER1_type 1 194 -2 2052 132 0 3 chr1 120878126 120878415 -121785938 - AluJb SINE Alu -24 288 1 807 77 10 0 chr1 120878538 120878642 -121785711 - AluSg/x SINE Alu -17 295 191 240 111 0 0 chr1 120879343 120879379 -121784974 + (CA)n Simple_repeat Simple_repeat 2 37 0 1904 175 12 45 chr1 120879473 120879874 -121784479 + MLT1B LTR MaLR 1 388 -2 302 313 47 16 chr1 120880322 120880450 -121783903 - MIR SINE MIR -72 190 59 749 125 0 0 chr1 120880627 120880731 -121783622 - U6 snRNA snRNA 0 107 4 229 328 0 0 chr1 120881867 120881934 -121782419 + MER91A DNA MER1_type 129 195 -1 455 160 175 60 chr1 120881999 120882199 -121782154 + L1MC5 LINE L1 7460 7682 -279 959 214 71 13 chr1 120882219 120882669 -121781684 + MLT1F LTR MaLR 39 567 0 2475 80 0 0 chr1 120882844 120883144 -121781209 + AluSg SINE Alu 1 300 -10 490 273 37 50 chr1 120883300 120883486 -121780867 + L1MC5 LINE L1 7697 7881 -80 2413 154 30 23 chr1 120883486 120883915 -121780438 + MSTB1 LTR MaLR 1 432 0 490 273 37 50 chr1 120883915 120883970 -121780383 + L1MC5 LINE L1 7881 7935 -26 355 188 12 12 chr1 120883995 120884075 -121780278 - MIR SINE MIR -108 154 75 1101 177 79 0 chr1 120884307 120884522 -121779831 + MER89 LTR ERV1 3 234 -325 5973 140 62 31 chr1 120884522 120886474 -121777879 + L1PA14 LINE L1 4137 6157 -4 24 0 0 0 chr1 120886475 120886499 -121777854 + AT_rich Low_complexity Low_complexity 1 24 0 1869 167 3 42 chr1 120886510 120886713 -121777640 + MER89 LTR ERV1 221 406 -153 1760 160 98 15 chr1 120886713 120887050 -121777303 + MER93b LTR ERV1 5 369 -4 1869 167 3 42 chr1 120887050 120887199 -121777154 + MER89 LTR ERV1 406 559 0 2574 44 0 0 chr1 120887427 120887720 -121776633 - AluY SINE Alu -18 293 1 212 222 0 16 chr1 120887958 120888021 -121776332 + GA-rich Low_complexity Low_complexity 2 63 0 688 260 24 33 chr1 120888912 120889094 -121775259 + MIR SINE MIR 33 214 -48 1898 162 6 22 chr1 120889114 120889429 -121774924 + AluJb SINE Alu 1 310 -2 524 252 171 9 chr1 120891803 120892025 -121772328 - MIR SINE MIR 0 262 5 241 313 131 0 chr1 120892021 120892120 -121772233 - MIR SINE MIR -125 137 26 * 412 120 55 34 chr1 120892302 120892820 -121771533 + (TA)n Simple_repeat Simple_repeat 1 529 0 222 37 0 0 chr1 120895435 120895462 -121768891 + (A)n Simple_repeat Simple_repeat 1 27 0 384 331 46 11 chr1 120896416 120896591 -121767762 + L2 LINE L2 3088 3268 -4 494 294 108 15 chr1 120896668 120896872 -121767481 - MIR SINE MIR -18 244 22 299 164 16 0 chr1 120897208 120897269 -121767084 + (TA)n Simple_repeat Simple_repeat 2 63 0 321 289 0 0 chr1 120897269 120897359 -121766994 + L1MC4 LINE L1 6614 6703 -1339 252 267 47 0 chr1 120897283 120897369 -121766984 - L1MC4 LINE L1 -1339 6703 6614 * 707 172 9 0 chr1 120897452 120897568 -121766785 + FLAM_C SINE Alu 2 118 -25 33 0 0 0 chr1 120897568 120897601 -121766752 + AT_rich Low_complexity Low_complexity 1 33 0 2312 61 0 0 chr1 120899126 120899424 -121764929 + AluSg SINE Alu 2 299 0 563 274 65 10 chr1 120900088 120900289 -121764064 - MIR SINE MIR -31 231 20 216 0 0 0 chr1 120901985 120902009 -121762344 + (CA)n Simple_repeat Simple_repeat 2 25 0 239 298 210 0 chr1 120902768 120902892 -121761461 + MIR SINE MIR 77 226 -36 1382 174 30 70 chr1 120904579 120904877 -121759476 + AluJo SINE Alu 7 292 -20 225 0 0 0 chr1 120904954 120904979 -121759374 + (CA)n Simple_repeat Simple_repeat 2 26 0 385 243 34 68 chr1 120905176 120905324 -121759029 - MIR SINE MIR -78 184 42 205 245 0 0 chr1 120907342 120907391 -121756962 + CT-rich Low_complexity Low_complexity 1 49 0 441 280 40 51 chr1 120907851 120908026 -121756327 + MIR SINE MIR 20 192 -70 577 272 71 0 chr1 120908275 120908444 -121755909 - MIR SINE MIR -78 184 4 1205 170 4 48 chr1 120908644 120908873 -121755480 - MER20 DNA MER1_type 0 219 1 280 333 9 19 chr1 120908877 120908985 -121755368 - MIR SINE MIR -128 134 28 266 0 29 0 chr1 120909230 120909264 -121755089 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2296 88 0 0 chr1 120909266 120909549 -121754804 - AluSx SINE Alu -29 283 1 2312 109 7 0 chr1 120909999 120910303 -121754050 - AluSx SINE Alu -6 306 1 584 213 160 27 chr1 120910943 120911131 -121753222 - MER112 DNA MER1_type -6 254 42 4665 230 89 74 chr1 120911150 120912829 -121751524 - L1ME2 LINE L1 -9 6224 4573 2407 81 0 3 chr1 120912829 120913126 -121751227 - AluSg SINE Alu -14 296 1 4665 230 89 74 chr1 120913126 120914330 -121750023 - L1ME2 LINE L1 -1660 4573 3389 2586 74 0 0 chr1 120914330 120914639 -121749714 - AluY SINE Alu -2 309 1 4665 230 89 74 chr1 120914639 120914938 -121749415 - L1ME2 LINE L1 -2844 3389 3096 2047 144 0 0 chr1 120914938 120915230 -121749123 - AluSx SINE Alu -20 292 1 4665 230 89 74 chr1 120915230 120915892 -121748461 - L1ME2 LINE L1 -3137 3096 2337 2084 124 3 3 chr1 120915892 120916198 -121748155 + AluSx SINE Alu 1 306 0 4665 230 89 74 chr1 120916198 120916408 -121747945 - L1ME2 LINE L1 -3896 2337 2132 * 6079 173 21 42 chr1 120916402 120916516 -121747837 - L1MC1 LINE L1 0 6333 6218 2710 95 8 16 chr1 120916516 120916894 -121747459 + THE1C LTR MaLR 1 375 0 6079 173 21 42 chr1 120916894 120917317 -121747036 - L1MC1 LINE L1 -115 6218 5788 2399 102 0 3 chr1 120917317 120917622 -121746731 - AluSx SINE Alu -8 304 1 6079 173 21 42 chr1 120917622 120919388 -121744965 - L1MC1 LINE L1 -545 5788 4078 42 65 0 0 chr1 120919393 120919470 -121744883 + AT_rich Low_complexity Low_complexity 1 77 0 6478 25 12 4 chr1 120919679 120920402 -121743951 - SVA Other Other -1 1385 657 4443 209 91 78 chr1 120920404 120921355 -121742998 - L1ME2 LINE L1 -4248 2148 1211 1592 170 4 0 chr1 120921355 120921608 -121742745 + AluJb SINE Alu 50 303 -9 4443 209 91 78 chr1 120921608 120922034 -121742319 - L1ME2 LINE L1 -5185 1211 792 682 197 31 0 chr1 120922034 120922161 -121742192 - FLAM_A SINE Alu -2 131 1 4443 209 91 78 chr1 120922161 120922624 -121741729 - L1ME2 LINE L1 -5604 792 284 837 127 0 0 chr1 120922818 120922936 -121741417 + FLAM_C SINE Alu 1 118 -15 1916 157 3 3 chr1 120923865 120924164 -121740189 - AluJb SINE Alu -13 299 1 1068 242 36 4 chr1 120924164 120924416 -121739937 + MIR SINE MIR 3 262 0 212 211 14 0 chr1 120925043 120925114 -121739239 + (TG)n Simple_repeat Simple_repeat 1 72 0 579 293 101 5 chr1 120925330 120925528 -121738825 + MIR SINE MIR 45 261 -1 266 274 42 21 chr1 120926588 120926683 -121737670 - MIR3 SINE MIR -7 201 105 209 245 0 0 chr1 120927048 120927101 -121737252 - L2 LINE L2 0 3272 3220 309 304 128 62 chr1 120927405 120927678 -121736675 + L2 LINE L2 2974 3264 -8 1214 133 10 5 chr1 120929409 120929605 -121734748 - L1PA16 LINE L1 -9 6157 5961 2285 110 0 0 chr1 120929606 120929906 -121734447 - AluSc SINE Alu -9 300 1 210 408 39 0 chr1 120930060 120930190 -121734163 - L2 LINE L2 -600 2714 2580 33 56 0 0 chr1 120930349 120930403 -121733950 + AT_rich Low_complexity Low_complexity 1 54 0 2492 224 17 22 chr1 120930434 120931033 -121733320 + MLT2F LTR ERVL 1 596 -67 1019 167 8 132 chr1 120931267 120931518 -121732835 - MER58A DNA MER1_type -4 220 1 373 299 19 13 chr1 120931562 120931719 -121732634 + ERVL-F LTR ERVL 282 439 -5325 315 319 72 61 chr1 120931803 120932179 -121732174 - L2 LINE L2 -953 2361 1982 2149 127 0 13 chr1 120932995 120933311 -121731042 - AluSx SINE Alu 0 312 1 198 128 0 0 chr1 120933416 120933455 -121730898 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 120933583 120933604 -121730749 + AT_rich Low_complexity Low_complexity 1 21 0 428 217 22 0 chr1 120933715 120933807 -121730546 + L2 LINE L2 2657 2750 -564 699 184 0 0 chr1 120933911 120934052 -121730301 + GA-rich Low_complexity Low_complexity 3 143 0 214 315 91 75 chr1 120934271 120934525 -121729828 + L2 LINE L2 2220 2477 -837 2050 163 93 30 chr1 120934535 120935008 -121729345 - L1MB7 LINE L1 -20 6662 6160 3499 198 10 5 chr1 120935431 120936536 -121727817 - L1MB7 LINE L1 -519 6159 5049 4127 127 4 37 chr1 120936578 120937305 -121727048 - L1MB3 LINE L1 -36 6147 5445 4069 232 16 58 chr1 120937309 120937760 -121726593 - L1MB7 LINE L1 -1725 4919 4450 8487 104 27 12 chr1 120937760 120938315 -121726038 - HSMAR2 DNA Mariner 0 1302 757 2053 130 0 0 chr1 120938315 120938630 -121725723 - AluSx SINE Alu 0 316 2 8487 104 27 12 chr1 120938630 120939353 -121725000 - HSMAR2 DNA Mariner -545 757 2 4069 232 16 58 chr1 120939353 120939677 -121724676 - L1MB7 LINE L1 -2194 4450 4114 2289 110 0 3 chr1 120939677 120939977 -121724376 + AluSx SINE Alu 1 299 -13 1471 203 3 21 chr1 120939977 120940262 -121724091 - AluJo SINE Alu -31 281 1 4069 232 16 58 chr1 120940262 120940984 -121723369 - L1MB7 LINE L1 -2529 4115 3317 741 183 8 0 chr1 120940984 120941104 -121723249 - FLAM_A SINE Alu -12 121 1 4069 232 16 58 chr1 120941104 120941220 -121723133 - L1MB7 LINE L1 -3327 3317 3198 1576 224 32 28 chr1 120941217 120941992 -121722361 - L1MB7 LINE L1 -3679 2965 2185 * 276 102 0 0 chr1 120942032 120942081 -121722272 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2391 247 74 20 chr1 120942091 120942852 -121721501 - L1MB7 LINE L1 -5733 809 8 865 257 72 4 chr1 120942979 120943216 -121721137 + MIR SINE MIR 2 254 -8 1382 261 60 15 chr1 120943392 120943842 -121720511 + LTR40a LTR ERVL 1 519 0 390 175 19 48 chr1 120944479 120944582 -121719771 + L1M4 LINE L1 2929 3028 -3118 2822 225 70 50 chr1 120944686 120944748 -121719605 + L1M4 LINE L1 3026 3085 -3061 2555 74 0 0 chr1 120944748 120945057 -121719296 + AluY SINE Alu 1 309 -2 2822 225 70 50 chr1 120945057 120946253 -121718100 + L1M4 LINE L1 3085 4372 -1774 2510 73 0 10 chr1 120946261 120946574 -121717779 + AluSg SINE Alu 1 310 0 274 321 179 12 chr1 120946678 120947008 -121717345 - L2 LINE L2 -1317 1997 1613 814 220 33 6 chr1 120947034 120947216 -121717137 + MER20 DNA MER1_type 20 206 -13 236 203 27 54 chr1 120948155 120948229 -121716124 + LTR67 LTR ERVL 478 549 -8 670 319 16 0 chr1 120948613 120948804 -121715549 + MER91A DNA MER1_type 1 194 -2 2034 132 0 3 chr1 120949647 120949936 -121714417 - AluJb SINE Alu -24 288 1 2591 24 0 10 chr1 120950058 120950355 -121713998 - AluY SINE Alu -17 294 1 935 257 85 53 chr1 120950763 120951141 -121713212 + L2 LINE L2 1706 2095 -1219 711 148 47 13 chr1 120951192 120951341 -121713012 - L1MB3 LINE L1 0 6183 6030 869 226 82 0 chr1 120952016 120952211 -121712142 + MIR SINE MIR 52 262 0 266 231 137 43 chr1 120952685 120952802 -121711551 + MIR SINE MIR 129 256 -6 601 144 0 19 chr1 120957283 120957387 -121706966 - AluJ SINE Alu -5 307 206 1386 157 0 44 chr1 120957421 120957650 -121706703 - AluJb SINE Alu -93 219 1 1439 280 65 39 chr1 120957658 120958175 -121706178 - L1M4 LINE L1 -1786 4360 3858 900 103 32 0 chr1 120958175 120958301 -121706052 - FLAM_C SINE Alu -3 130 1 1439 280 65 39 chr1 120958301 120959062 -121705291 - L1M4 LINE L1 -2288 3858 2997 243 0 0 0 chr1 120960035 120960062 -121704291 + (T)n Simple_repeat Simple_repeat 1 27 0 1118 163 0 36 chr1 120960658 120960854 -121703499 + AluJb SINE Alu 86 274 -38 700 129 23 0 chr1 120960861 120960993 -121703360 + GA-rich Low_complexity Low_complexity 1 135 0 342 239 177 9 chr1 120961253 120961479 -121702874 - L1ME4a LINE L1 -58 6063 5800 454 287 64 10 chr1 120962262 120962464 -121701889 - MIR SINE MIR -48 214 2 533 241 28 57 chr1 120962841 120962947 -121701406 + L2 LINE L2 3136 3239 -33 1933 184 0 32 chr1 120962947 120963322 -121701031 - MLT1A1 LTR MaLR -2 363 1 533 241 28 57 chr1 120963322 120963356 -121700997 + L2 LINE L2 3239 3272 0 444 241 145 7 chr1 120964363 120964508 -121699845 - MIR SINE MIR -19 243 79 742 242 141 4 chr1 120964601 120964828 -121699525 - MIR SINE MIR -3 259 2 3498 160 52 75 chr1 120964971 120965579 -121698774 - MER21B LTR ERV1 0 913 280 2299 110 0 0 chr1 120965579 120965887 -121698466 - AluY SINE Alu -3 308 1 3498 160 52 75 chr1 120965887 120966137 -121698216 - MER21B LTR ERV1 -633 280 26 1036 105 3 44 chr1 120966137 120966320 -121698033 + MSTB LTR MaLR 1 178 -254 541 251 98 74 chr1 120966467 120966750 -121697603 + L1MEd LINE L1 604 879 -5240 2036 157 10 0 chr1 120966750 120967056 -121697297 + AluSx SINE Alu 1 309 -3 541 251 98 74 chr1 120967056 120967341 -121697012 + L1MEd LINE L1 879 1186 -4933 * 4532 172 36 15 chr1 120967337 120968575 -121695778 + L1MB3 LINE L1 4898 6164 -19 288 289 85 49 chr1 120968614 120968931 -121695422 + L1MEd LINE L1 1208 1543 -4767 2104 106 7 7 chr1 120968931 120969223 -121695130 + AluY SINE Alu 1 292 -19 288 289 85 49 chr1 120969223 120969292 -121695061 + L1MEd LINE L1 1543 1608 -4702 1811 167 0 26 chr1 120969842 120970148 -121694205 - AluJb SINE Alu -12 300 3 411 283 168 29 chr1 120970177 120970982 -121693371 + L1MEd LINE L1 2193 3109 -3020 259 242 221 11 chr1 120970985 120971080 -121693273 - L2 LINE L2 0 3313 3199 385 315 25 2 chr1 120971107 120971235 -121693118 + MIR SINE MIR 25 153 -68 32 0 0 0 chr1 120971314 120971346 -121693007 + AT_rich Low_complexity Low_complexity 1 32 0 236 317 24 12 chr1 120971706 120971788 -121692565 - L2 LINE L2 -5 3267 3185 298 286 40 63 chr1 120971959 120972085 -121692268 + L2 LINE L2 3191 3313 0 1594 181 11 11 chr1 120972173 120972455 -121691898 - AluJo SINE Alu -30 282 1 211 37 0 0 chr1 120972776 120972803 -121691550 + (TTTG)n Simple_repeat Simple_repeat 2 116 0 2013 131 7 0 chr1 120972803 120973085 -121691268 - AluJb SINE Alu -28 284 1 186 103 0 0 chr1 120973396 120973425 -121690928 + (TG)n Simple_repeat Simple_repeat 2 30 0 1209 64 0 0 chr1 120974623 120974764 -121689589 - AluY SINE Alu -170 141 1 802 256 92 58 chr1 120974804 120975265 -121689088 - L2 LINE L2 -65 3248 2771 269 281 56 107 chr1 120975307 120975503 -121688850 - L2 LINE L2 -41 3231 3046 799 218 61 5 chr1 120975531 120975728 -121688625 + Charlie5 DNA MER1_type 33 240 -2372 429 88 0 121 chr1 120975729 120975820 -121688533 + Charlie5 DNA MER1_type 2543 2622 0 585 349 100 21 chr1 120975883 120976365 -121687988 - L2 LINE L2 -341 2973 2454 201 260 19 39 chr1 120976413 120976517 -121687836 + GA-rich Low_complexity Low_complexity 1 102 0 304 301 33 20 chr1 120976547 120976700 -121687653 + G-rich Low_complexity Low_complexity 4 158 0 529 354 35 40 chr1 120976862 120977101 -121687252 - MSTB2 LTR MaLR -199 229 1 * 1399 235 89 65 chr1 120977101 120977756 -121686597 - MER21B LTR ERV1 -144 719 1 404 214 8 143 chr1 120978819 120978882 -121685471 + MER81 DNA DNA 2 41 -73 6248 101 8 0 chr1 120978882 120979559 -121684794 - L1PA13 LINE L1 -4 6159 5489 1663 103 0 0 chr1 120979559 120979773 -121684580 - AluSx SINE Alu -98 214 1 6248 101 8 0 chr1 120979773 120980818 -121683535 - L1PA13 LINE L1 -674 5489 4430 404 214 8 143 chr1 120980818 120980880 -121683473 + MER81 DNA DNA 41 110 -4 268 313 113 9 chr1 120981094 120981209 -121683144 + L2 LINE L2 3187 3313 0 407 189 8 133 chr1 120981212 120981275 -121683078 + MIR SINE MIR 50 85 -146 1993 142 13 25 chr1 120981275 120981591 -121682762 - AluSx SINE Alu 0 312 1 407 189 8 133 chr1 120981591 120981667 -121682686 + MIR SINE MIR 85 169 -62 1369 127 14 81 chr1 120981668 120981990 -121682363 + MLT1B LTR MaLR 1 390 0 6749 60 17 34 chr1 120983134 120984128 -121680225 - SVA Other Other 0 1386 433 5339 69 22 53 chr1 120984190 120985012 -121679341 - SVA Other Other -520 866 71 207 0 0 0 chr1 120985012 120985035 -121679318 + (GGGAGA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr1 120985473 120985494 -121678859 + AT_rich Low_complexity Low_complexity 1 21 0 2012 88 42 75 chr1 120985774 120986081 -121678272 - AluSx SINE Alu -15 297 1 324 0 0 0 chr1 120986668 120986704 -121677649 + (CA)n Simple_repeat Simple_repeat 2 37 0 259 271 174 21 chr1 120986923 120987067 -121677286 - MIR SINE MIR -1 261 96 854 264 58 21 chr1 120987654 120987896 -121676457 - MIR SINE MIR 0 262 12 624 143 247 19 chr1 120987897 120988051 -121676302 - MER53 DNA DNA 0 189 1 538 346 23 9 chr1 120988988 120989205 -121675148 - MIR SINE MIR -30 232 13 2598 55 0 0 chr1 120989308 120989616 -121674737 - AluY SINE Alu -3 308 1 525 208 50 25 chr1 120989854 120989974 -121674379 - MER5C DNA MER1_type -200 124 2 453 289 0 8 chr1 120990084 120990205 -121674148 - L2 LINE L2 -4 3309 3190 235 320 33 33 chr1 120990224 120990346 -121674007 + MIR SINE MIR 39 160 -102 355 325 68 68 chr1 120991326 120991587 -121672766 - L2 LINE L2 -541 2773 2510 841 204 60 30 chr1 120991587 120991668 -121672685 - MER3 DNA MER1_type 0 209 132 2482 80 0 0 chr1 120991668 120991969 -121672384 + AluSc SINE Alu 1 301 -8 841 204 60 30 chr1 120991969 120992088 -121672265 - MER3 DNA MER1_type -77 132 3 355 325 68 68 chr1 120992088 120992250 -121672103 - L2 LINE L2 -803 2511 2350 1082 216 186 18 chr1 120992641 120993040 -121671313 + L2 LINE L2 894 1359 -1955 300 188 0 0 chr1 120993129 120993193 -121671160 + (TG)n Simple_repeat Simple_repeat 2 65 0 497 213 85 35 chr1 120993235 120993376 -121670977 - MER91A DNA MER1_type -36 160 13 * 582 267 9 43 chr1 120993360 120993570 -121670783 + L2 LINE L2 1444 1646 -1668 261 98 0 0 chr1 120993705 120993746 -121670607 + AluSc SINE Alu 252 292 -7 2279 271 179 23 chr1 120993746 120994512 -121669841 + L2 LINE L2 1653 2298 -1015 225 0 0 0 chr1 120994512 120994537 -121669816 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 2279 271 179 23 chr1 120994537 120995202 -121669151 + L2 LINE L2 2298 3313 0 195 204 0 0 chr1 120995476 120995530 -121668823 + (CCG)n Simple_repeat Simple_repeat 3 56 0 308 75 0 19 chr1 120995558 120995611 -121668742 + (GGA)n Simple_repeat Simple_repeat 2 53 0 27 49 0 0 chr1 120995761 120995802 -121668551 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 120996118 120996139 -121668214 + GC_rich Low_complexity Low_complexity 1 21 0 283 276 0 13 chr1 120997349 120997425 -121666928 - Charlie4 DNA MER1_type -6 1955 1881 1168 252 91 13 chr1 120997821 120998222 -121666131 + L2 LINE L2 2621 3061 -252 260 206 95 16 chr1 120998480 120998543 -121665810 - L2 LINE L2 -52 3220 3153 1896 136 3 24 chr1 120998721 120999015 -121665338 - AluSx SINE Alu -23 289 2 2009 102 0 15 chr1 120999104 120999369 -121664984 - AluSg SINE Alu -19 291 31 190 333 0 0 chr1 120999593 120999647 -121664706 + L2 LINE L2 3210 3263 -9 22 35 0 0 chr1 121000453 121000482 -121663871 + AT_rich Low_complexity Low_complexity 1 29 0 192 132 19 38 chr1 121001440 121001493 -121662860 + CT-rich Low_complexity Low_complexity 3 54 0 714 169 32 0 chr1 121001500 121001624 -121662729 - FLAM_A SINE Alu -7 135 8 297 167 0 0 chr1 121002057 121002111 -121662242 + (CA)n Simple_repeat Simple_repeat 2 55 0 440 245 77 34 chr1 121002786 121003019 -121661334 - L1ME4a LINE L1 0 6121 5879 440 231 12 75 chr1 121003038 121003198 -121661155 - L1ME4a LINE L1 -359 5762 5613 580 260 106 72 chr1 121003646 121003881 -121660472 + MIR SINE MIR 17 259 -3 21 0 0 0 chr1 121005350 121005371 -121658982 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 121005753 121005775 -121658578 + AT_rich Low_complexity Low_complexity 1 22 0 794 312 92 43 chr1 121006052 121006520 -121657833 - L2 LINE L2 -2 3311 2821 330 298 105 16 chr1 121007118 121007242 -121657111 - MIR SINE MIR -49 213 79 2208 105 0 25 chr1 121008319 121008634 -121655719 + AluSp SINE Alu 1 307 -6 21 36 0 0 chr1 121009953 121009981 -121654372 + AT_rich Low_complexity Low_complexity 1 28 0 308 250 130 22 chr1 121010049 121010233 -121654120 + L1ME4a LINE L1 5867 6070 -51 204 97 0 0 chr1 121010289 121010320 -121654033 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2377 101 0 0 chr1 121010323 121010630 -121653723 - AluSc SINE Alu -2 307 1 262 170 117 75 chr1 121011104 121011198 -121653155 + MIR SINE MIR 119 216 -46 1733 141 116 3 chr1 121011371 121011690 -121652663 + MER46B DNA MER2_type 7 236 0 1642 161 40 20 chr1 121011691 121012040 -121652313 - L1M4 LINE L1 -1000 5146 4791 1523 194 19 6 chr1 121012019 121012334 -121652019 - L1MCa LINE L1 -3170 3256 2938 * 322 196 54 0 chr1 121012335 121012391 -121651962 - Tigger3(Golem) DNA MER2_type 0 3038 2980 284 196 113 10 chr1 121012391 121012488 -121651865 - L1M4 LINE L1 -1716 4710 4604 458 117 0 0 chr1 121012515 121012575 -121651778 + AluJ/FRAM SINE Alu 228 287 -25 1348 85 109 16 chr1 121012606 121012854 -121651499 - Tigger3(Golem) DNA MER2_type -482 2547 2277 561 139 0 0 chr1 121012836 121012915 -121651438 - Tigger3(Golem) DNA MER2_type -2912 117 39 * 1775 249 19 6 chr1 121012956 121013349 -121651004 - L1MCa LINE L1 -3487 2939 2537 1720 163 89 6 chr1 121013349 121013662 -121650691 - MER44D DNA MER2_type 0 609 1 1775 249 19 6 chr1 121013662 121013746 -121650607 - L1MCa LINE L1 -3889 2537 2456 680 69 0 0 chr1 121013746 121013833 -121650520 - L1PA3 LINE L1 0 6155 6069 1591 146 203 12 chr1 121013852 121014257 -121650096 - L1MCa LINE L1 -4017 2409 1928 1607 182 68 23 chr1 121014274 121014670 -121649683 - L1MCa LINE L1 -4668 1758 1345 1004 289 122 8 chr1 121014723 121015124 -121649229 + L2 LINE L2 2516 2962 -352 907 304 11 48 chr1 121015269 121015624 -121648729 - L2 LINE L2 -386 2928 2587 2485 70 0 0 chr1 121015746 121016045 -121648308 + AluSg SINE Alu 1 299 -11 2356 57 0 24 chr1 121016341 121016638 -121647715 + AluY SINE Alu 1 290 -21 607 261 88 14 chr1 121016652 121016936 -121647417 + L1MEc LINE L1 1288 1592 -5233 226 313 16 0 chr1 121016956 121017020 -121647333 + GA-rich Low_complexity Low_complexity 3 67 0 398 180 88 149 chr1 121017033 121017182 -121647171 + L1MEc LINE L1 1447 1592 -4990 2051 152 0 9 chr1 121017182 121017497 -121646856 + AluJb SINE Alu 1 312 0 398 180 88 149 chr1 121017497 121017647 -121646706 + L1MEc LINE L1 1592 1750 -4832 2071 135 3 3 chr1 121017686 121017998 -121646355 + AluSx SINE Alu 1 312 0 294 29 0 0 chr1 121018008 121018043 -121646310 + (CA)n Simple_repeat Simple_repeat 2 36 0 1827 150 0 42 chr1 121018260 121018573 -121645780 - AluJo SINE Alu -12 300 1 884 228 154 16 chr1 121018641 121018797 -121645556 + L1MEc LINE L1 2363 2496 -4329 2219 121 0 0 chr1 121018797 121019095 -121645258 + AluSx SINE Alu 1 298 -14 884 228 154 16 chr1 121019095 121019315 -121645038 + L1MEc LINE L1 2496 2791 -4034 579 140 35 44 chr1 121019332 121019446 -121644907 - Charlie4 DNA MER1_type -1779 182 70 1569 137 0 70 chr1 121019590 121019861 -121644492 - AluJb SINE Alu -5 307 56 378 199 0 7 chr1 121019935 121020007 -121644346 - AluJb SINE Alu -254 54 1 7299 49 11 3 chr1 121020033 121021122 -121643231 - L1PA7 LINE L1 -11 6143 5028 790 105 0 61 chr1 121021223 121021337 -121643016 - AluSq/x SINE Alu -205 108 2 2225 88 24 3 chr1 121021949 121022243 -121642110 - AluSp SINE Alu -13 300 1 186 253 38 63 chr1 121022472 121022551 -121641802 - MER5B DNA MER1_type -77 101 25 760 230 37 11 chr1 121022818 121023009 -121641344 - MER106A DNA MER1_type -40 196 1 235 212 118 24 chr1 121023018 121023103 -121641250 - L1ME4a LINE L1 -76 6045 5953 27 73 0 0 chr1 121023516 121023571 -121640782 + AT_rich Low_complexity Low_complexity 1 55 0 1418 209 58 3 chr1 121023895 121024187 -121640166 - AluJo SINE Alu 0 312 5 1997 144 7 13 chr1 121026143 121026442 -121637911 + AluJb SINE Alu 1 297 -15 265 218 8 137 chr1 121026834 121026958 -121637395 + MER5B DNA MER1_type 3 110 -68 186 43 0 0 chr1 121027092 121027115 -121637238 + (TG)n Simple_repeat Simple_repeat 1 23 0 752 269 72 44 chr1 121027289 121027428 -121636925 + MIR SINE MIR 2 136 -126 2227 105 0 0 chr1 121027428 121027714 -121636639 + AluSp SINE Alu 1 286 -27 219 36 0 0 chr1 121027714 121027742 -121636611 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 752 269 72 44 chr1 121027742 121027850 -121636503 + MIR SINE MIR 135 257 -5 2226 95 7 0 chr1 121027958 121028252 -121636101 - AluY SINE Alu -15 296 1 2020 95 57 7 chr1 121028252 121028535 -121635818 - AluSg SINE Alu -13 297 1 719 208 61 3 chr1 121028536 121028790 -121635563 - MER58B DNA MER1_type -9 332 1 1671 177 41 9 chr1 121029299 121029644 -121634709 - MLT2C1 LTR ERVL -41 356 1 182 240 29 87 chr1 121030707 121030811 -121633542 - L2 LINE L2 -1739 1575 1478 281 333 31 23 chr1 121030834 121030963 -121633390 - L2 LINE L2 -2012 1302 1173 867 250 86 13 chr1 121031083 121031315 -121633038 - MIR SINE MIR -13 249 1 2412 61 7 0 chr1 121032001 121032298 -121632055 - AluY SINE Alu -6 305 7 2845 124 103 35 chr1 121032498 121032991 -121631362 + MER1A DNA MER1_type 1 527 0 482 186 169 24 chr1 121033176 121033300 -121631053 - FLAM_C SINE Alu -1 142 1 585 143 36 27 chr1 121033527 121033639 -121630714 - AluSg/x SINE Alu -2 307 195 306 0 0 0 chr1 121033640 121033674 -121630679 + (TG)n Simple_repeat Simple_repeat 2 35 0 198 0 0 0 chr1 121035562 121035584 -121628769 + (T)n Simple_repeat Simple_repeat 1 22 0 337 248 28 99 chr1 121035584 121035725 -121628628 - MIR SINE MIR -56 206 76 764 132 0 0 chr1 121035899 121036005 -121628348 - U6 snRNA snRNA 0 107 2 1586 145 38 54 chr1 121036006 121036264 -121628089 - L1MC1 LINE L1 -10 6323 6069 2402 53 0 23 chr1 121036264 121036567 -121627786 - AluY SINE Alu -12 299 4 1586 145 38 54 chr1 121036567 121036625 -121627728 - L1MC1 LINE L1 -264 6069 6012 2156 135 0 0 chr1 121036942 121037245 -121627108 - AluSx SINE Alu -9 303 1 1016 92 0 0 chr1 121037249 121037380 -121626973 - AluSc SINE Alu -178 131 1 2057 135 0 0 chr1 121037441 121037730 -121626623 - AluSx SINE Alu -11 301 13 658 184 92 46 chr1 121037882 121038056 -121626297 + MER58C DNA MER1_type 29 210 -5 3215 152 34 91 chr1 121038101 121038868 -121625485 + L1MB5 LINE L1 5411 6132 -42 2542 55 3 7 chr1 121038868 121039178 -121625175 + AluSp SINE Alu 1 309 -4 3215 152 34 91 chr1 121039178 121039211 -121625142 + L1MB5 LINE L1 6132 6165 -9 240 169 91 39 chr1 121039803 121039880 -121624473 - MIR SINE MIR -53 209 129 744 253 57 45 chr1 121039889 121040134 -121624219 + MIR SINE MIR 5 252 -10 208 287 119 20 chr1 121040150 121040251 -121624102 - MIR SINE MIR -124 138 28 854 162 26 13 chr1 121040357 121040511 -121623842 + FRAM SINE Alu 1 156 -10 180 163 0 0 chr1 121040703 121040746 -121623607 + A-rich Low_complexity Low_complexity 1 43 0 435 321 132 43 chr1 121040875 121041127 -121623226 + L1MC4a LINE L1 5317 5545 -2263 2293 48 12 79 chr1 121041127 121041457 -121622896 - AluY SINE Alu -3 308 1 435 321 132 43 chr1 121041457 121041736 -121622617 + L1MC4a LINE L1 5545 5895 -1913 910 248 87 58 chr1 121041865 121042244 -121622109 + L2 LINE L2 1706 2095 -1219 1258 139 54 16 chr1 121042295 121042553 -121621800 - L1MB3 LINE L1 0 6577 6310 1674 139 114 3 chr1 121042608 121042932 -121621421 + MER46B DNA MER2_type 2 236 0 1488 155 30 18 chr1 121042933 121043268 -121621085 - L1MB3 LINE L1 -1000 5540 5202 1388 187 22 9 chr1 121043261 121043576 -121620777 - L1MB3 LINE L1 -3170 3370 3052 * 298 196 54 0 chr1 121043577 121043633 -121620720 - Tigger3(Golem) DNA MER2_type 0 3038 2980 238 189 116 11 chr1 121043633 121043728 -121620625 - L1M4 LINE L1 -1716 4430 4326 433 117 0 0 chr1 121043757 121043817 -121620536 + AluJ/FRAM SINE Alu 228 287 -25 1212 89 109 16 chr1 121043848 121044096 -121620257 - Tigger3(Golem) DNA MER2_type -481 2548 2278 522 139 0 0 chr1 121044078 121044157 -121620196 - Tigger3(Golem) DNA MER2_type -2912 117 39 * 1557 224 15 29 chr1 121044198 121044591 -121619762 - L1MB3 LINE L1 -3487 3053 2656 1565 163 89 6 chr1 121044591 121044904 -121619449 - MER44D DNA MER2_type 0 609 1 1557 224 15 29 chr1 121044904 121044988 -121619365 - L1MB3 LINE L1 -3884 2656 2581 637 69 0 0 chr1 121044988 121045075 -121619278 - L1PA2 LINE L1 0 6155 6069 1557 224 15 29 chr1 121045075 121045096 -121619257 - L1MB3 LINE L1 -3959 2581 2561 1386 156 203 12 chr1 121045094 121045499 -121618854 - L1MCa LINE L1 -4017 2409 1928 * 1457 160 65 7 chr1 121045500 121045912 -121618441 - L1MCa LINE L1 -4557 1869 1345 1020 289 122 8 chr1 121045965 121046366 -121617987 + L2 LINE L2 2516 2962 -352 952 305 11 45 chr1 121046511 121046865 -121617488 - L2 LINE L2 -386 2928 2587 2471 70 0 0 chr1 121046987 121047286 -121617067 + AluSg SINE Alu 1 299 -11 2484 79 0 0 chr1 121047582 121047887 -121616466 + AluY SINE Alu 1 305 -6 213 342 94 17 chr1 121048245 121048362 -121615991 - MIR3 SINE MIR -42 166 41 2137 116 10 0 chr1 121048377 121048680 -121615673 - AluSc SINE Alu -3 306 1 272 241 0 0 chr1 121048975 121049033 -121615320 - MIR SINE MIR -34 228 171 335 250 0 0 chr1 121049197 121049265 -121615088 - L2 LINE L2 -1 3312 3245 2215 112 6 6 chr1 121049560 121049872 -121614481 + AluSx SINE Alu 1 312 0 382 239 449 0 chr1 121050203 121050370 -121613983 + MIR SINE MIR 21 262 0 749 294 174 13 chr1 121052205 121052651 -121611702 - L2 LINE L2 -218 3054 2541 2250 85 10 3 chr1 121052871 121053166 -121611187 + AluSx SINE Alu 1 297 -15 570 254 86 118 chr1 121053713 121053890 -121610463 + L1MEd LINE L1 691 872 -5247 875 184 100 13 chr1 121053890 121054129 -121610224 - MIR SINE MIR -1 261 2 570 254 86 118 chr1 121054129 121054214 -121610139 + L1MEd LINE L1 872 958 -5161 2115 134 19 7 chr1 121054214 121054521 -121609832 + AluJb SINE Alu 1 311 -1 570 254 86 118 chr1 121054521 121054674 -121609679 + L1MEd LINE L1 958 1094 -5025 530 302 131 28 chr1 121054781 121055139 -121609214 + MLT1J LTR MaLR 117 511 0 623 296 137 26 chr1 121055139 121055625 -121608728 + L1MEd LINE L1 1094 1668 -4642 1915 155 0 10 chr1 121055660 121055969 -121608384 + AluJb SINE Alu 3 308 -4 486 184 120 20 chr1 121055972 121056222 -121608131 + L1MEd LINE L1 3027 3301 -2828 345 189 57 12 chr1 121056631 121056733 -121607620 - FRAM SINE Alu -46 120 47 2064 137 10 0 chr1 121056935 121057242 -121607111 - AluSx SINE Alu -2 310 1 1154 232 57 17 chr1 121057245 121057663 -121606690 - L1M4 LINE L1 -3171 2975 2541 27 0 0 0 chr1 121057702 121057729 -121606624 + AT_rich Low_complexity Low_complexity 1 27 0 280 259 45 9 chr1 121057865 121057977 -121606376 - MLT1F1 LTR MaLR -74 493 378 292 283 87 45 chr1 121058038 121058231 -121606122 - MLT1F1 LTR MaLR -287 268 65 549 315 83 41 chr1 121058232 121058546 -121605807 - HAL1 LINE L1 -1043 1464 1138 843 344 101 19 chr1 121059880 121060455 -121603898 + L2 LINE L2 2135 2756 -558 190 378 55 60 chr1 121060538 121060668 -121603685 + L2 LINE L2 2926 3055 -217 2393 65 31 0 chr1 121060668 121060961 -121603392 + AluY SINE Alu 1 302 -9 190 378 55 60 chr1 121060961 121061177 -121603176 + L2 LINE L2 3055 3270 -2 1540 175 46 52 chr1 121061220 121061543 -121602810 - THE1B LTR MaLR 0 364 42 2110 113 17 3 chr1 121061543 121061835 -121602518 + AluSg SINE Alu 1 296 -14 1540 175 46 52 chr1 121061835 121061877 -121602476 - THE1B LTR MaLR -322 42 1 334 83 0 0 chr1 121061913 121061961 -121602392 - MSTA LTR MaLR -380 48 1 1335 229 40 55 chr1 121062025 121062265 -121602088 - L1ME1 LINE L1 -9 6226 5995 2237 111 0 7 chr1 121062265 121062562 -121601791 - AluSx SINE Alu -17 295 1 1335 229 40 55 chr1 121062562 121062776 -121601577 - L1ME1 LINE L1 -240 5995 5779 1581 218 63 76 chr1 121062849 121063390 -121600963 - MLT1F LTR MaLR 0 542 9 1747 216 136 20 chr1 121063403 121063894 -121600459 - L1ME1 LINE L1 -1277 4938 4341 1644 159 83 18 chr1 121063894 121064221 -121600132 - MER7A DNA MER2_type 0 346 1 1747 216 136 20 chr1 121064221 121064429 -121599924 - L1ME1 LINE L1 -1874 4341 4158 6435 104 33 2 chr1 121064563 121064966 -121599387 + L1P3 LINE L1 8 397 -6064 240 35 0 0 chr1 121064966 121064995 -121599358 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 6435 104 33 2 chr1 121064995 121065578 -121598775 + L1P3 LINE L1 397 1025 -5436 693 99 0 10 chr1 121065578 121065679 -121598674 - LTR12 LTR ERV1 0 714 615 280 244 11 0 chr1 121065681 121065771 -121598582 - LTR30 LTR ERV1 -79 643 553 1289 97 46 71 chr1 121065773 121066011 -121598342 - LTR12 LTR ERV1 -430 284 53 267 196 0 0 chr1 121066012 121066063 -121598290 - LTR30 LTR ERV1 -671 51 1 27591 97 22 17 chr1 121066063 121066434 -121597919 + L1PA7 LINE L1 736 1104 -5050 2002 119 17 27 chr1 121066434 121066727 -121597626 + AluSg SINE Alu 2 291 -19 27591 97 22 17 chr1 121066727 121071741 -121592612 + L1PA7 LINE L1 1104 6143 -11 360 199 0 7 chr1 121071767 121071839 -121592514 + AluJb SINE Alu 1 54 -248 1573 138 0 71 chr1 121071913 121072182 -121592171 + AluJb SINE Alu 56 305 -7 528 148 37 28 chr1 121072332 121072440 -121591913 + Charlie4 DNA MER1_type 74 182 -1779 724 228 154 16 chr1 121072457 121072677 -121591676 - L1ME1 LINE L1 -4034 2362 2174 2257 117 0 0 chr1 121072677 121072976 -121591377 - AluSx SINE Alu -13 299 1 724 228 154 16 chr1 121072976 121073132 -121591221 - L1ME1 LINE L1 -4222 2174 1934 1912 145 0 41 chr1 121073200 121073518 -121590835 + AluJo SINE Alu 1 305 -7 285 211 74 91 chr1 121073699 121073734 -121590619 - L1ME1 LINE L1 -4853 1362 1328 315 0 0 0 chr1 121073734 121073769 -121590584 + (TG)n Simple_repeat Simple_repeat 2 36 0 2106 131 3 3 chr1 121073776 121074088 -121590265 - AluSx SINE Alu 0 312 1 285 211 74 91 chr1 121074088 121074271 -121590082 - L1ME1 LINE L1 -4893 1322 1133 183 42 0 0 chr1 121074264 121074288 -121590065 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 * 2077 157 0 3 chr1 121074291 121074604 -121589749 - AluJb SINE Alu 0 312 1 252 283 0 62 chr1 121074725 121074838 -121589515 + CT-rich Low_complexity Low_complexity 2 107 0 1235 288 92 33 chr1 121074850 121075147 -121589206 - L1ME1 LINE L1 -5233 1163 885 2420 54 0 24 chr1 121075147 121075444 -121588909 - AluY SINE Alu -21 290 1 1235 288 92 33 chr1 121075444 121075909 -121588444 - L1ME1 LINE L1 -5511 885 356 491 320 14 0 chr1 121075916 121076063 -121588290 - L1ME1 LINE L1 -6117 279 131 196 336 123 33 chr1 121077070 121077192 -121587161 - L2 LINE L2 0 3313 3181 343 220 144 23 chr1 121077283 121077415 -121586938 - L2 LINE L2 -5 3308 3161 382 296 196 30 chr1 121077468 121077870 -121586483 - L2 LINE L2 -650 2664 2196 716 311 79 16 chr1 121077872 121078251 -121586102 + L1MC4a LINE L1 5528 5930 -1878 235 238 71 32 chr1 121078462 121078588 -121585765 - L2 LINE L2 -1107 2207 2077 511 250 96 39 chr1 121078612 121078944 -121585409 - L2 LINE L2 -1357 1957 1607 891 211 44 40 chr1 121079072 121079299 -121585054 - Charlie1b DNA MER1_type -242 281 54 1605 174 52 14 chr1 121079366 121079654 -121584699 - AluJo SINE Alu -12 300 2 197 348 61 0 chr1 121080129 121080244 -121584109 + MIR SINE MIR 128 249 -13 642 151 9 9 chr1 121080307 121080413 -121583940 + FLAM_A SINE Alu 20 125 -17 1771 129 29 4 chr1 121081294 121081574 -121582779 + L1MC1 LINE L1 6046 6332 -1 26 0 0 0 chr1 121083220 121083246 -121581107 + AT_rich Low_complexity Low_complexity 1 26 0 300 295 16 0 chr1 121083424 121083546 -121580807 + MIR SINE MIR 112 235 -27 1478 181 44 31 chr1 121083744 121084037 -121580316 - AluJo SINE Alu -15 297 1 637 303 81 31 chr1 121084632 121084932 -121579421 + L2 LINE L2 595 926 -2388 1721 157 10 33 chr1 121084932 121085237 -121579116 - AluJb SINE Alu -14 298 1 637 303 81 31 chr1 121085237 121085382 -121578971 + L2 LINE L2 926 1062 -2252 2863 277 65 23 chr1 121085382 121085682 -121578671 + L2 LINE L2 1939 2225 -1088 2248 142 101 3 chr1 121085682 121086069 -121578284 - MSTB LTR MaLR 0 426 2 2863 277 65 23 chr1 121086069 121087072 -121577281 + L2 LINE L2 2225 3312 -1 254 284 29 10 chr1 121087903 121088005 -121576348 + L1MC4 LINE L1 7923 8026 -16 1896 148 28 0 chr1 121088037 121088328 -121576025 - AluSq SINE Alu -14 299 1 21 57 0 0 chr1 121088764 121088799 -121575554 + AT_rich Low_complexity Low_complexity 1 35 0 1170 180 42 18 chr1 121089347 121089564 -121574789 - AluJb SINE Alu -90 222 1 452 252 65 0 chr1 121091072 121091195 -121573158 - L2 LINE L2 -4 3309 3179 23 0 0 0 chr1 121091924 121091947 -121572406 + AT_rich Low_complexity Low_complexity 1 23 0 250 192 41 14 chr1 121092845 121092918 -121571435 - L1MC4 LINE L1 -31 8011 7937 583 259 69 6 chr1 121092922 121093096 -121571257 - L1MC4 LINE L1 -169 7873 7689 1749 177 10 7 chr1 121093361 121093666 -121570687 + AluJb SINE Alu 1 306 -6 1807 240 78 33 chr1 121093724 121094362 -121569991 + L1MC4 LINE L1 7367 8033 -9 326 254 98 25 chr1 121094891 121095013 -121569340 + L2 LINE L2 3179 3309 -4 1665 246 101 8 chr1 121095169 121095685 -121568668 - L1ME3A LINE L1 -194 5976 5413 2213 96 7 20 chr1 121096303 121096605 -121567748 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 121098349 121098370 -121565983 + AT_rich Low_complexity Low_complexity 1 21 0 2233 89 10 7 chr1 121100554 121100846 -121563507 - AluSg SINE Alu -17 293 1 1087 277 195 19 chr1 121102289 121103331 -121561022 - L2 LINE L2 -11 3302 2072 239 284 89 11 chr1 121103333 121103502 -121560851 - L2 LINE L2 -1412 1902 1635 2229 100 3 10 chr1 121103716 121104015 -121560338 + AluSg SINE Alu 1 297 -13 190 167 0 24 chr1 121106378 121106420 -121557933 - L2 LINE L2 -319 2953 2913 513 0 0 0 chr1 121107234 121107291 -121557062 + (TG)n Simple_repeat Simple_repeat 1 57 0 388 280 180 9 chr1 121108347 121108558 -121555795 - MIR SINE MIR -8 254 8 315 209 121 33 chr1 121109427 121109518 -121554835 + MIR SINE MIR 23 121 -87 315 0 0 0 chr1 121110034 121110069 -121554284 + (CA)n Simple_repeat Simple_repeat 1 35 0 282 106 0 0 chr1 121110069 121110116 -121554237 + (CCA)n Simple_repeat Simple_repeat 1 47 0 2280 81 0 23 chr1 121111198 121111505 -121552848 - AluSx SINE Alu -12 300 1 255 103 0 0 chr1 121112165 121112204 -121552149 + (CA)n Simple_repeat Simple_repeat 2 40 0 324 48 0 0 chr1 121113504 121113546 -121550807 + (CA)n Simple_repeat Simple_repeat 1 42 0 275 217 0 0 chr1 121113546 121113606 -121550747 - MIR SINE MIR -74 188 129 545 299 93 9 chr1 121113759 121113973 -121550380 - MIR SINE MIR -19 243 12 2092 133 56 0 chr1 121113977 121114315 -121550038 + MER46B DNA MER2_type 1 232 -4 806 196 29 23 chr1 121114373 121114546 -121549807 - FAM SINE Alu 0 175 2 541 224 46 82 chr1 121116705 121116825 -121547528 + MIR SINE MIR 9 121 -141 1907 153 3 7 chr1 121116825 121117120 -121547233 - AluJb SINE Alu -18 294 1 541 224 46 82 chr1 121117120 121117195 -121547158 + MIR SINE MIR 121 197 -65 297 0 0 0 chr1 121118037 121118070 -121546283 + (CA)n Simple_repeat Simple_repeat 2 34 0 233 219 62 0 chr1 121118574 121118638 -121545715 + MER113 DNA MER1_type? 1 68 -453 227 302 12 12 chr1 121119880 121119966 -121544387 + L2 LINE L2 2580 2665 -649 315 293 67 63 chr1 121120090 121120329 -121544024 + L2 LINE L2 2848 3087 -185 718 274 6 0 chr1 121120393 121120572 -121543781 + MIR SINE MIR 12 191 -71 332 344 15 8 chr1 121120626 121120757 -121543596 + L2 LINE L2 3139 3270 -2 561 221 165 6 chr1 121120876 121121034 -121543319 - MIR SINE MIR -71 191 9 358 273 61 76 chr1 121125433 121125631 -121538722 - L2 LINE L2 -26 3287 3093 2229 81 3 3 chr1 121126164 121126471 -121537882 + AluSp SINE Alu 7 313 0 373 267 23 8 chr1 121126472 121126603 -121537750 + GA-rich Low_complexity Low_complexity 2 134 0 2218 81 27 0 chr1 121127187 121127484 -121536869 - AluSx SINE Alu -7 305 1 187 229 21 21 chr1 121127663 121127711 -121536642 + MIR SINE MIR 84 131 -77 2077 98 3 0 chr1 121127773 121128059 -121536294 + AluSg SINE Alu 1 287 -23 22 0 0 0 chr1 121129727 121129749 -121534604 + AT_rich Low_complexity Low_complexity 1 22 0 1856 71 4 68 chr1 121130039 121130320 -121534033 - AluSg SINE Alu -15 295 33 243 0 0 0 chr1 121130700 121130727 -121533626 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 0 0 0 chr1 121130734 121130763 -121533590 + (TA)n Simple_repeat Simple_repeat 1 29 0 1742 156 3 19 chr1 121130763 121131070 -121533283 - AluJb SINE Alu -10 302 1 219 143 0 0 chr1 121132033 121132068 -121532285 - MIR3 SINE MIR -6 202 168 341 267 107 59 chr1 121132170 121132357 -121531996 - MIR SINE MIR -54 208 13 268 306 23 0 chr1 121132318 121132426 -121531927 + MIR SINE MIR 26 139 -69 * 371 250 10 10 chr1 121132478 121132574 -121531779 - MIR SINE MIR -121 141 46 219 36 0 0 chr1 121133289 121133317 -121531036 + (TG)n Simple_repeat Simple_repeat 1 28 0 220 256 115 26 chr1 121133806 121133884 -121530469 + MIR SINE MIR 105 189 -73 243 79 0 0 chr1 121134877 121134915 -121529438 + (TG)n Simple_repeat Simple_repeat 1 38 0 219 320 61 34 chr1 121136331 121136478 -121527875 + L2 LINE L2 2821 2971 -301 271 282 106 12 chr1 121136946 121137031 -121527322 + MIR SINE MIR 20 112 -150 934 236 137 95 chr1 121137290 121137773 -121526580 + MLT1J LTR MaLR 1 503 -8 351 281 209 56 chr1 121137778 121137974 -121526379 + L2 LINE L2 3041 3266 -6 236 216 59 0 chr1 121137995 121138046 -121526307 + MIR SINE MIR 139 192 -70 2423 67 0 16 chr1 121138152 121138466 -121525887 - AluY SINE Alu -2 309 1 241 229 0 0 chr1 121138606 121138654 -121525699 - L2 LINE L2 -340 2973 2926 209 318 127 55 chr1 121139165 121139385 -121524968 - L2 LINE L2 -2 3311 3076 204 330 136 39 chr1 121139434 121139692 -121524661 - L2 LINE L2 -611 2703 2421 645 159 32 40 chr1 121139995 121140121 -121524232 - AluJb SINE Alu -177 135 11 599 250 151 48 chr1 121140209 121140481 -121523872 - L2 LINE L2 -2 3311 3012 201 277 72 0 chr1 121140531 121140614 -121523739 - L2 LINE L2 -941 2373 2285 290 292 14 0 chr1 121140656 121140728 -121523625 - L2 LINE L2 -1018 2296 2224 189 224 41 0 chr1 121140745 121140794 -121523559 - L2 LINE L2 -8 3264 3214 21 36 0 0 chr1 121141749 121141777 -121522576 + GC_rich Low_complexity Low_complexity 1 28 0 1716 155 17 0 chr1 121142526 121142817 -121521536 - AluJo SINE Alu -14 298 3 292 329 12 0 chr1 121142936 121143018 -121521335 - L2 LINE L2 -2 3270 3188 192 229 42 21 chr1 121143112 121143160 -121521193 + MER5B DNA MER1_type 1 49 -129 2040 96 7 14 chr1 121143333 121143625 -121520728 - AluSx SINE Alu -21 291 2 432 243 35 28 chr1 121143686 121143830 -121520523 - L1ME4a LINE L1 -13 6108 5964 21 36 0 0 chr1 121143830 121143858 -121520495 + AT_rich Low_complexity Low_complexity 1 28 0 1061 274 136 22 chr1 121143911 121144384 -121519969 + L2 LINE L2 2777 3301 -8 198 0 0 0 chr1 121144384 121144406 -121519947 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1158 214 87 22 chr1 121144411 121144734 -121519619 - MER2 DNA MER2_type 0 344 1 2722 16 0 0 chr1 121145161 121145468 -121518885 + AluY SINE Alu 1 307 -4 23 33 0 0 chr1 121145911 121145941 -121518412 + AT_rich Low_complexity Low_complexity 1 30 0 28 61 0 0 chr1 121147063 121147112 -121517241 + AT_rich Low_complexity Low_complexity 1 49 0 712 233 134 0 chr1 121148540 121148712 -121515641 - MIR SINE MIR 0 262 68 2282 104 0 0 chr1 121148758 121149065 -121515288 + AluSq SINE Alu 1 307 -6 206 213 0 62 chr1 121149423 121149482 -121514871 + (TA)n Simple_repeat Simple_repeat 1 55 -20 2087 80 3 14 chr1 121149482 121149768 -121514585 + AluY SINE Alu 17 299 -12 206 213 0 62 chr1 121149768 121149788 -121514565 + (TA)n Simple_repeat Simple_repeat 55 75 0 224 323 84 48 chr1 121149869 121150036 -121514317 + MIR3 SINE MIR 15 187 -21 22 70 0 0 chr1 121152915 121152958 -121511395 + AT_rich Low_complexity Low_complexity 1 43 0 533 219 82 27 chr1 121154359 121154505 -121509848 + MIR3 SINE MIR 52 205 -3 255 273 97 114 chr1 121155414 121155468 -121508885 - MIR3 SINE MIR -15 193 140 763 191 0 8 chr1 121155468 121155599 -121508754 - FLAM_A SINE Alu 0 133 4 255 273 97 114 chr1 121155599 121155720 -121508633 - MIR3 SINE MIR -68 140 21 259 307 79 57 chr1 121155797 121156025 -121508328 + L3 LINE CR1 1342 1574 -3 292 325 32 29 chr1 121157512 121157681 -121506672 + MIR SINE MIR 30 193 -62 681 254 68 17 chr1 121157987 121158164 -121506189 + MIR3 SINE MIR 8 193 -15 2154 122 3 0 chr1 121158878 121159189 -121505164 - AluSx SINE Alu 0 312 1 33 43 0 0 chr1 121162224 121162271 -121502082 + AT_rich Low_complexity Low_complexity 1 47 0 239 268 61 37 chr1 121162363 121162445 -121501908 + L3 LINE CR1 1493 1576 -1 745 171 0 8 chr1 121164647 121164764 -121499589 + FLAM_A SINE Alu 1 116 -17 397 217 46 46 chr1 121166753 121166905 -121497448 + L2 LINE L2 3101 3252 -61 1453 86 15 0 chr1 121166993 121167191 -121497162 - AluSg/x SINE Alu -15 295 95 214 349 47 9 chr1 121168386 121168492 -121495861 + L2 LINE L2 3150 3259 -13 193 238 0 0 chr1 121168617 121168659 -121495694 - L3 LINE CR1 -13 1564 1523 189 0 0 0 chr1 121168668 121168689 -121495664 + (A)n Simple_repeat Simple_repeat 1 21 0 2074 201 64 4 chr1 121169119 121169571 -121494782 + L1MD2 LINE L1 5628 6106 -253 369 0 0 0 chr1 121169572 121169613 -121494740 + (CA)n Simple_repeat Simple_repeat 1 41 0 987 168 14 24 chr1 121169614 121169822 -121494531 + L1MD2 LINE L1 6154 6359 0 213 111 0 67 chr1 121170275 121170320 -121494033 + (GGGAGA)n Simple_repeat Simple_repeat 1 42 0 702 177 0 0 chr1 121170414 121170538 -121493815 + FLAM_A SINE Alu 13 136 -6 287 185 19 0 chr1 121171340 121171394 -121492959 + L2 LINE L2 3218 3272 0 490 276 117 35 chr1 121171716 121172037 -121492316 + L2 LINE L2 2618 3131 -182 221 284 197 39 chr1 121172468 121172595 -121491758 - L3b LINE CR1 -198 1385 1239 319 241 0 0 chr1 121172629 121172708 -121491645 - MIR SINE MIR -31 231 153 1117 273 126 16 chr1 121174780 121175316 -121489037 - L2 LINE L2 0 3313 2706 348 267 128 5 chr1 121175368 121175534 -121488819 - MIR SINE MIR -50 212 24 545 287 43 18 chr1 121176300 121176464 -121487889 + MIR SINE MIR 13 180 -82 959 328 85 53 chr1 121177019 121177525 -121486828 + L3 LINE CR1 32 553 -1024 513 271 128 25 chr1 121177715 121177918 -121486435 + MIR SINE MIR 2 225 -37 3867 152 73 4 chr1 121178136 121178884 -121485469 - L1MB7 LINE L1 0 6184 5385 1426 271 70 18 chr1 121179300 121179757 -121484596 + L3 LINE CR1 745 1225 -352 382 276 94 37 chr1 121179782 121179996 -121484357 - MIR SINE MIR -28 234 4 939 204 78 33 chr1 121180124 121180369 -121483984 + MIR SINE MIR 2 257 -5 247 306 0 47 chr1 121180380 121180465 -121483888 + L2 LINE L2 2582 2662 -652 247 161 32 0 chr1 121180465 121180527 -121483826 + (TA)n Simple_repeat Simple_repeat 1 64 0 1163 193 25 0 chr1 121180544 121180746 -121483607 - AluJb SINE Alu -105 207 1 2496 73 0 7 chr1 121180755 121181058 -121483295 - AluY SINE Alu -10 301 1 216 268 0 18 chr1 121181064 121181120 -121483233 + L2 LINE L2 2694 2748 -566 183 143 0 29 chr1 121181108 121181143 -121483210 + L2 LINE L2 3239 3272 0 * 685 229 14 0 chr1 121182393 121182533 -121481820 - MIR SINE MIR -92 170 29 496 251 113 9 chr1 121183025 121183183 -121481170 - MIR SINE MIR -62 146 20 3020 107 7 4 chr1 121183242 121183885 -121480468 - L1PA13 LINE L1 -482 5681 5039 2983 81 110 7 chr1 121183885 121184332 -121480021 + L1PA13 LINE L1 5671 6163 0 982 188 28 6 chr1 121184619 121184795 -121479558 - MER5A DNA MER1_type 0 189 10 186 250 92 13 chr1 121184825 121184901 -121479452 - MIR3 SINE MIR -6 202 121 559 279 90 100 chr1 121185041 121185614 -121478739 - L2 LINE L2 -37 3235 2544 623 335 66 39 chr1 121185724 121186163 -121478190 + L2 LINE L2 2820 3270 -2 381 236 28 0 chr1 121186258 121186330 -121478023 + L2 LINE L2 3240 3313 0 361 285 138 37 chr1 121186665 121187019 -121477334 + L1MEd LINE L1 561 950 -5169 5704 34 0 12 chr1 121187510 121188149 -121476204 + SVA Other Other 756 1386 0 579 262 41 6 chr1 121189534 121189706 -121474647 + MIR SINE MIR 24 201 -61 279 300 27 27 chr1 121189785 121189895 -121474458 - L3 LINE CR1 -221 1356 1247 393 322 48 7 chr1 121189999 121190145 -121474208 + MIR SINE MIR 20 171 -91 226 154 0 58 chr1 121190192 121190244 -121474109 + L2 LINE L2 3169 3217 -96 248 370 16 0 chr1 121190795 121190922 -121473431 + L2 LINE L2 3144 3272 0 374 274 111 21 chr1 121191206 121191396 -121472957 + L1MC5 LINE L1 7719 7925 -36 835 301 8 30 chr1 121192237 121192473 -121471880 - MIR SINE MIR -19 243 13 322 268 183 24 chr1 121193986 121194150 -121470203 + MIR SINE MIR 3 192 -70 279 282 53 53 chr1 121194155 121194325 -121470028 + L1MEd LINE L1 2 171 -5948 412 285 60 58 chr1 121194575 121194800 -121469553 + L1MEd LINE L1 561 784 -5335 2137 158 3 25 chr1 121194800 121194979 -121469374 + MER7A DNA MER2_type 2 169 -2869 2207 120 0 0 chr1 121194979 121195279 -121469074 + AluSg SINE Alu 1 300 -10 2137 158 3 25 chr1 121195279 121195454 -121468899 + MER7A DNA MER2_type 169 346 0 412 285 60 58 chr1 121195454 121195726 -121468627 + L1MEd LINE L1 784 1059 -5060 2556 70 0 0 chr1 121196885 121197187 -121467166 - AluY SINE Alu -9 302 1 291 54 0 0 chr1 121197230 121197267 -121467086 + (TG)n Simple_repeat Simple_repeat 1 37 0 314 274 26 44 chr1 121197326 121197439 -121466914 - L2 LINE L2 -16 3256 3146 281 273 13 0 chr1 121198711 121198788 -121465565 + MIR SINE MIR 59 136 -72 240 381 38 0 chr1 121199554 121199714 -121464639 + MIR SINE MIR 74 239 -23 662 284 28 33 chr1 121200101 121200312 -121464041 - MIR SINE MIR -19 243 34 419 257 30 0 chr1 121201348 121201449 -121462904 - MIR SINE MIR -75 187 84 231 229 33 16 chr1 121201445 121201506 -121462847 - MIR SINE MIR 0 262 201 * 243 314 51 29 chr1 121201728 121201865 -121462488 - L2 LINE L2 -12 3301 3162 281 316 41 20 chr1 121202642 121202740 -121461613 - MIR SINE MIR -59 149 50 182 167 0 24 chr1 121202861 121202903 -121461450 + CT-rich Low_complexity Low_complexity 1 41 0 1743 195 69 38 chr1 121202923 121203375 -121460978 + MER31B LTR ERV1 1 466 0 595 296 43 0 chr1 121203585 121203771 -121460582 - MIR SINE MIR -19 243 50 182 268 42 28 chr1 121204001 121204072 -121460281 - L2 LINE L2 -1 3271 3200 359 307 18 54 chr1 121204190 121204356 -121459997 - MIR SINE MIR -52 210 51 708 93 78 47 chr1 121204586 121204715 -121459638 - L1PB2 LINE L1 -9 6142 6010 448 290 65 76 chr1 121204734 121204996 -121459357 + L1ME LINE L1 5379 5637 -484 225 286 0 0 chr1 121205015 121205078 -121459275 + L1P3 LINE L1 5685 5747 -407 345 100 0 0 chr1 121205607 121205657 -121458696 + (CA)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr1 121206558 121206583 -121457770 + AT_rich Low_complexity Low_complexity 1 25 0 369 167 15 0 chr1 121206583 121206649 -121457704 - AluJ/FRAM SINE Alu -12 290 224 235 264 46 35 chr1 121207361 121207448 -121456905 - MIR SINE MIR -117 145 58 339 306 111 56 chr1 121207460 121207884 -121456469 + L2 LINE L2 2590 3033 -239 558 275 30 45 chr1 121208567 121208767 -121455586 + MIR SINE MIR 66 262 0 1432 275 94 17 chr1 121208795 121209337 -121455016 - L3 LINE CR1 -212 1365 782 2552 84 0 0 chr1 121209416 121209726 -121454627 + AluSg SINE Alu 1 310 0 231 218 18 0 chr1 121210329 121210384 -121453969 + L2 LINE L2 2931 2986 -327 * 251 299 75 96 chr1 121210380 121210567 -121453786 - L2 LINE L2 -6 3307 3125 301 190 320 0 chr1 121210574 121210674 -121453679 - MER4C LTR ERV1 -31 434 303 3250 269 92 25 chr1 121210785 121212016 -121452337 - L2 LINE L2 -159 3154 1823 719 250 109 18 chr1 121212028 121212248 -121452105 + MIR SINE MIR 4 243 -19 497 285 122 19 chr1 121212251 121212514 -121451839 - L2 LINE L2 -1475 1839 1550 416 287 219 15 chr1 121212531 121212796 -121451557 + L2 LINE L2 2995 3313 0 482 323 121 42 chr1 121212849 121212957 -121451396 - L2 LINE L2 -1 3271 3173 413 50 17 0 chr1 121212957 121213017 -121451336 + (TG)n Simple_repeat Simple_repeat 2 62 0 482 323 121 42 chr1 121213017 121213239 -121451114 - L2 LINE L2 -99 3173 2915 271 270 22 45 chr1 121213495 121213584 -121450769 - L2 LINE L2 -3 3310 3224 1863 167 58 31 chr1 121213902 121214350 -121450003 + MLT1C LTR MaLR 6 465 -2 188 388 29 10 chr1 121214351 121214454 -121449899 + L2 LINE L2 3161 3265 -7 207 309 160 0 chr1 121214512 121214606 -121449747 - MIR SINE MIR -66 142 34 3063 133 59 35 chr1 121215473 121216051 -121448302 - L1MB3 LINE L1 -1 6182 5591 303 301 173 13 chr1 121216144 121216300 -121448053 - MIR SINE MIR -38 224 44 307 213 158 114 chr1 121216872 121217074 -121447279 - MIR SINE MIR -3 259 49 946 192 66 84 chr1 121217711 121217813 -121446540 + MER113 DNA MER1_type? 235 337 -184 2880 144 52 13 chr1 121217813 121218291 -121446062 + LOR1a LTR ERV1 1 497 0 946 192 66 84 chr1 121218291 121218474 -121445879 + MER113 DNA MER1_type? 337 515 -6 409 190 92 49 chr1 121218830 121219014 -121445339 - L1ME4a LINE L1 -2 6119 5928 417 285 37 58 chr1 121219185 121219480 -121444873 - L1ME4a LINE L1 -2265 5543 5255 736 247 22 16 chr1 121220043 121220151 -121444202 - MIR SINE MIR 0 262 151 1376 142 49 0 chr1 121220151 121220376 -121443977 - MER46A DNA MER2_type 0 236 1 736 247 22 16 chr1 121220376 121220449 -121443904 - MIR SINE MIR -111 151 80 566 232 70 0 chr1 121220817 121220959 -121443394 - MIR SINE MIR -6 256 105 271 379 59 0 chr1 121222686 121222839 -121441514 - L2 LINE L2 -822 2492 2331 260 266 64 98 chr1 121222919 121223092 -121441261 + L2 LINE L2 2223 2389 -925 419 223 169 54 chr1 121223356 121223486 -121440867 + L2 LINE L2 3169 3313 0 240 352 52 43 chr1 121223489 121223699 -121440654 + L2 LINE L2 2702 2913 -401 509 224 88 0 chr1 121223728 121223853 -121440500 - MER96 DNA MER1_type? -3 172 37 1150 140 171 46 chr1 121223867 121224218 -121440135 + Charlie1 DNA MER1_type 2366 2760 -1 2053 104 215 8 chr1 121224510 121224864 -121439489 + MSTA LTR MaLR 1 427 -1 294 270 132 66 chr1 121224989 121225141 -121439212 - MER5B DNA MER1_type -16 162 1 225 354 15 0 chr1 121226695 121226760 -121437593 - MIR SINE MIR -74 134 69 986 298 153 14 chr1 121227760 121228190 -121436163 - L3 LINE CR1 -1 1576 1087 4065 136 28 2 chr1 121228617 121229236 -121435117 + MER41B LTR ERV1 1 635 0 187 259 52 0 chr1 121230006 121230064 -121434289 - MIR SINE MIR -119 143 83 294 313 78 54 chr1 121230271 121230501 -121433852 - MIR SINE MIR -2 260 21 579 214 29 14 chr1 121230705 121230845 -121433508 - MIR SINE MIR -91 171 30 391 322 106 24 chr1 121230836 121231044 -121433309 - L3 LINE CR1 -487 1090 866 * 2031 170 43 28 chr1 121231068 121231491 -121432862 - L1MC3 LINE L1 -284 7501 7073 809 326 106 68 chr1 121231520 121231668 -121432685 - L3 LINE CR1 -794 783 642 2148 58 0 4 chr1 121231668 121231977 -121432376 + AluSg SINE Alu 28 335 0 809 326 106 68 chr1 121231977 121232563 -121431790 - L3 LINE CR1 -935 642 20 794 234 133 5 chr1 121232889 121233107 -121431246 - MIR SINE MIR 0 262 17 1636 191 23 29 chr1 121233181 121233531 -121430822 - MLT1A1 LTR MaLR 0 365 18 380 222 61 0 chr1 121234134 121234233 -121430120 - L2 LINE L2 -6 3307 3203 300 250 83 95 chr1 121234795 121234963 -121429390 + MIR SINE MIR 72 237 -25 180 331 103 65 chr1 121237545 121237835 -121426518 + L2 LINE L2 447 747 -2567 1025 296 171 39 chr1 121237840 121238882 -121425471 + L2 LINE L2 1291 2469 -845 876 262 22 22 chr1 121238884 121239109 -121425244 - MIR SINE MIR -26 236 12 296 326 33 31 chr1 121239242 121239368 -121424985 + L2 LINE L2 2744 2867 -405 650 202 16 0 chr1 121239368 121239497 -121424856 + MER94 DNA DNA 4 134 0 296 326 33 31 chr1 121239497 121239614 -121424739 + L2 LINE L2 2867 2982 -290 324 0 0 0 chr1 121239686 121239722 -121424631 + (CTG)n Simple_repeat Simple_repeat 1 36 0 395 303 109 0 chr1 121239765 121239884 -121424469 + MIR SINE MIR 1 132 -130 270 167 42 0 chr1 121239955 121240003 -121424350 - L2 LINE L2 -3 3269 3220 * 520 275 71 49 chr1 121239970 121240208 -121424145 - MIR SINE MIR -14 248 8 355 204 80 0 chr1 121240210 121240298 -121424055 + L2 LINE L2 3140 3234 -38 204 67 0 0 chr1 121240605 121240635 -121423718 + (TG)n Simple_repeat Simple_repeat 2 31 0 359 331 69 12 chr1 121241918 121242078 -121422275 + MIR SINE MIR 24 192 -70 250 232 26 80 chr1 121242171 121242322 -121422031 + CT-rich Low_complexity Low_complexity 5 147 0 273 288 0 15 chr1 121242936 121243002 -121421351 + MER91A DNA MER1_type 116 180 -16 243 306 48 16 chr1 121243788 121243912 -121420441 + MER5A DNA MER1_type 36 163 -26 303 308 121 95 chr1 121244306 121244621 -121419732 + L2 LINE L2 2948 3270 -2 183 271 252 19 chr1 121244632 121244739 -121419614 + L2 LINE L2 3181 3312 -1 412 339 36 36 chr1 121244877 121245045 -121419308 + L2 LINE L2 3101 3268 -4 207 292 0 0 chr1 121245403 121245451 -121418902 - L2 LINE L2 -16 3297 3250 447 307 24 0 chr1 121246296 121246423 -121417930 - MIR SINE MIR -52 210 81 240 240 47 101 chr1 121246492 121246621 -121417732 + MIR SINE MIR 88 209 -53 195 270 63 16 chr1 121246666 121246729 -121417624 + MIR SINE MIR 9 74 -188 1024 242 25 52 chr1 121246738 121247064 -121417289 + L2 LINE L2 2997 3313 0 348 268 146 0 chr1 121247070 121247193 -121417160 + MIR SINE MIR 118 258 -4 268 388 0 0 chr1 121247191 121247294 -121417059 + L2 LINE L2 3207 3309 -4 * 300 106 0 0 chr1 121247500 121247547 -121416806 - MER53 DNA DNA -4 185 139 837 254 84 15 chr1 121248985 121249348 -121415005 - LTR33 LTR ERVL -27 494 76 204 342 62 31 chr1 121249566 121249727 -121414626 + MIR SINE MIR 82 247 -15 235 375 0 16 chr1 121250384 121250512 -121413841 - MIR SINE MIR -7 255 130 344 280 121 45 chr1 121251169 121251326 -121413027 - MIR SINE MIR -6 256 88 264 350 18 44 chr1 121251339 121251565 -121412788 + L2 LINE L2 2397 2616 -698 942 179 134 24 chr1 121251683 121251929 -121412424 + ORSL DNA AcHobo 3 275 0 427 189 0 0 chr1 121251941 121252015 -121412338 - MER81 DNA DNA -39 75 2 647 288 89 26 chr1 121252029 121252459 -121411894 + L2 LINE L2 2618 3131 -182 270 255 214 10 chr1 121252885 121252983 -121411370 - L3b LINE CR1 -193 1390 1273 457 277 0 0 chr1 121253020 121253132 -121411221 - MIR SINE MIR 0 262 151 709 260 43 24 chr1 121253419 121253627 -121410726 - MIR SINE MIR -14 248 37 886 188 35 0 chr1 121255467 121255637 -121408716 - MER58A DNA MER1_type -1 223 48 800 274 85 5 chr1 121255869 121256081 -121408272 + MIR SINE MIR 9 237 -25 609 291 36 0 chr1 121256341 121256506 -121407847 - MIR SINE MIR -11 251 81 715 317 81 44 chr1 121256680 121257379 -121406974 - L2 LINE L2 -212 3060 2337 214 294 33 33 chr1 121258426 121258518 -121405835 - MIR SINE MIR -4 258 167 2005 160 0 3 chr1 121258962 121259269 -121405084 - AluJb SINE Alu -6 306 1 28 48 0 0 chr1 121259320 121259362 -121404991 + AT_rich Low_complexity Low_complexity 1 42 0 231 140 35 18 chr1 121259370 121259427 -121404926 - L1MC1 LINE L1 0 6333 6276 1859 180 0 13 chr1 121259461 121259829 -121404524 - AluJb SINE Alu 0 364 1 450 0 0 0 chr1 121259844 121259894 -121404459 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 175 0 0 chr1 121259901 121259941 -121404412 - MARNA DNA Mariner -313 273 234 728 160 0 8 chr1 121259941 121260060 -121404293 + FLAM_A SINE Alu 21 138 -4 407 338 20 0 chr1 121260060 121260211 -121404142 - MARNA DNA Mariner -347 239 86 279 323 32 8 chr1 121260108 121260232 -121404121 + MARNA DNA Mariner 394 520 -66 * 679 229 149 17 chr1 121260278 121260453 -121403900 + MIR SINE MIR 53 250 -12 597 296 71 15 chr1 121261105 121261352 -121403001 + MIR SINE MIR 3 260 -2 2018 155 169 39 chr1 121261352 121261837 -121402516 + MER44D DNA MER2_type 1 603 -2 388 279 95 14 chr1 121261862 121262009 -121402344 - MIR SINE MIR 0 262 104 1327 144 9 42 chr1 121262012 121262227 -121402126 - AluJo SINE Alu -18 294 87 339 290 21 21 chr1 121262244 121262337 -121402016 - MIR SINE MIR -167 95 3 297 309 122 8 chr1 121262905 121263028 -121401325 - MIR SINE MIR -34 228 92 224 279 98 0 chr1 121263083 121263144 -121401209 - MIR SINE MIR -175 87 21 186 103 0 0 chr1 121263175 121263204 -121401149 + (CA)n Simple_repeat Simple_repeat 2 30 0 684 240 41 0 chr1 121263344 121263490 -121400863 - MIR SINE MIR -50 212 61 262 281 52 10 chr1 121263551 121263647 -121400706 + LTR50 LTR ERVL 102 201 -594 236 285 89 49 chr1 121264045 121264168 -121400185 - L2 LINE L2 0 3272 3145 587 339 142 27 chr1 121264308 121265343 -121399010 - L2 LINE L2 -358 2956 1803 * 673 189 28 14 chr1 121265336 121265479 -121398874 - MIR SINE MIR 0 262 118 405 203 180 8 chr1 121265579 121265707 -121398646 - MER103 DNA DNA -8 158 9 225 339 0 0 chr1 121266146 121266208 -121398145 - L2 LINE L2 -2 3311 3250 448 258 97 71 chr1 121267573 121267840 -121396513 - MARNA DNA Mariner -32 554 281 336 146 145 48 chr1 121269426 121269530 -121394823 + MIR SINE MIR 30 144 -64 261 240 13 53 chr1 121270277 121270352 -121394001 - L2 LINE L2 0 3272 3201 251 246 0 43 chr1 121270448 121270517 -121393836 - L2 LINE L2 -2 3270 3205 815 209 81 37 chr1 121271179 121271418 -121392935 - MIR SINE MIR 0 262 18 1975 183 92 56 chr1 121272042 121272544 -121391809 + MLT2B1 LTR ERVL 1 520 0 834 220 33 23 chr1 121273158 121273372 -121390981 + MIR SINE MIR 45 260 -2 398 289 58 0 chr1 121274968 121275089 -121389264 + MIR3 SINE MIR 81 208 0 222 345 63 10 chr1 121276226 121276434 -121387919 + L2 LINE L2 2628 2846 -468 357 272 152 0 chr1 121276459 121276584 -121387769 - MIR SINE MIR -19 243 100 290 296 70 9 chr1 121276653 121276768 -121387585 + L2 LINE L2 2934 3055 -217 443 287 39 55 chr1 121276793 121276974 -121387379 - MIR SINE MIR -72 190 13 257 212 250 23 chr1 121277089 121277221 -121387132 - MIR SINE MIR 0 262 101 660 340 86 46 chr1 121278039 121278119 -121386234 + L3 LINE CR1 324 399 -1178 1283 112 17 77 chr1 121278119 121278352 -121386001 - MER20 DNA MER1_type 0 219 1 660 340 86 46 chr1 121278352 121278727 -121385626 + L3 LINE CR1 399 797 -780 2397 85 7 0 chr1 121278950 121279244 -121385109 - AluSq SINE Alu -17 296 1 1444 273 94 17 chr1 121279323 121279865 -121384488 + L3 LINE CR1 782 1365 -212 558 275 30 45 chr1 121279893 121280093 -121384260 - MIR SINE MIR 0 262 66 203 227 27 45 chr1 121281623 121281677 -121382676 + (CAGAGA)n Simple_repeat Simple_repeat 2 55 -54 2351 94 13 0 chr1 121281677 121281984 -121382369 + AluSx SINE Alu 1 311 -1 203 227 27 45 chr1 121281984 121282039 -121382314 + (CAGAGA)n Simple_repeat Simple_repeat 55 109 0 231 218 18 0 chr1 121282587 121282642 -121381711 + L2 LINE L2 2931 2986 -327 * 237 298 77 99 chr1 121282638 121282819 -121381534 - L2 LINE L2 -6 3307 3131 301 190 320 0 chr1 121282831 121282931 -121381422 - MER4C LTR ERV1 -31 434 303 3239 267 93 25 chr1 121283042 121284272 -121380081 - L2 LINE L2 -159 3154 1823 719 250 109 18 chr1 121284284 121284504 -121379849 + MIR SINE MIR 4 243 -19 495 285 122 19 chr1 121284507 121284770 -121379583 - L2 LINE L2 -1475 1839 1550 431 283 219 15 chr1 121284787 121285052 -121379301 + L2 LINE L2 2995 3313 0 496 320 121 42 chr1 121285105 121285213 -121379140 - L2 LINE L2 -1 3271 3173 413 50 17 0 chr1 121285213 121285273 -121379080 + (TG)n Simple_repeat Simple_repeat 2 62 0 496 320 121 42 chr1 121285273 121285495 -121378858 - L2 LINE L2 -99 3173 2915 489 256 120 66 chr1 121285749 121286007 -121378346 - L2 LINE L2 -2 3311 3040 421 230 39 165 chr1 121286312 121286699 -121377654 - L2 LINE L2 -10 3262 2925 286 267 86 35 chr1 121286975 121287164 -121377189 - L2 LINE L2 -731 2583 2325 864 290 94 28 chr1 121287200 121287852 -121376501 + L2 LINE L2 2582 3280 -33 388 217 0 38 chr1 121288151 121288500 -121375853 + GA-rich Low_complexity Low_complexity 1 335 0 25 31 0 0 chr1 121288679 121288711 -121375642 + AT_rich Low_complexity Low_complexity 1 32 0 235 357 76 6 chr1 121289331 121289502 -121374851 - MIR SINE MIR -54 208 26 194 268 0 0 chr1 121289704 121289754 -121374599 - MIR SINE MIR -113 149 101 203 282 64 51 chr1 121289816 121289894 -121374459 + MIR SINE MIR 69 147 -115 805 223 139 5 chr1 121290028 121290243 -121374110 + MIR SINE MIR 15 258 -4 340 234 27 63 chr1 121290254 121290365 -121373988 + L2 LINE L2 3142 3248 -24 532 290 109 6 chr1 121291292 121291475 -121372878 + MIR SINE MIR 20 221 -41 223 410 67 0 chr1 121291727 121291832 -121372521 + L2 LINE L2 3111 3222 -50 224 347 61 20 chr1 121292512 121292610 -121371743 + MIR SINE MIR 147 248 -14 336 260 30 20 chr1 121293790 121293890 -121370463 + MIR SINE MIR 68 168 -94 2547 77 3 0 chr1 121293951 121294262 -121370091 + AluSq SINE Alu 1 312 -1 199 275 72 58 chr1 121294536 121294674 -121369679 - L2 LINE L2 -1 3312 3173 256 268 0 42 chr1 121294747 121294818 -121369535 - L2 LINE L2 0 3272 3205 333 266 58 58 chr1 121295137 121295291 -121369062 - MIR3 SINE MIR -8 200 47 763 236 69 57 chr1 121295886 121296132 -121368221 + MIR SINE MIR 12 260 -2 240 170 21 0 chr1 121296173 121296220 -121368133 + L2 LINE L2 3257 3304 -9 223 303 13 0 chr1 121296221 121296297 -121368056 + (CATA)n Simple_repeat Simple_repeat 2 78 0 194 374 88 0 chr1 121298783 121298930 -121365423 + MER5A DNA MER1_type 3 162 -27 486 275 38 38 chr1 121299003 121299163 -121365190 - MER5B DNA MER1_type 0 178 19 305 279 36 79 chr1 121299195 121299335 -121365018 - MIR SINE MIR -59 149 16 246 141 127 58 chr1 121300585 121300677 -121363676 + MLT1E LTR MaLR 40 140 -427 998 218 0 10 chr1 121300789 121300982 -121363371 + MLT1F1 LTR MaLR 374 564 -3 231 291 0 0 chr1 121301252 121301307 -121363046 - L2 LINE L2 0 3313 3259 517 270 65 32 chr1 121301449 121301634 -121362719 - MIR SINE MIR -5 257 67 486 223 26 56 chr1 121301663 121301806 -121362547 - MIR SINE MIR -46 162 12 513 265 105 17 chr1 121303024 121303205 -121361148 + MIR SINE MIR 66 262 0 183 80 0 0 chr1 121303372 121303397 -121360956 + (TC)n Simple_repeat Simple_repeat 1 25 0 185 250 66 40 chr1 121303967 121304043 -121360310 + L3 LINE CR1 1473 1550 -27 303 191 95 24 chr1 121304778 121304862 -121359491 - L2 LINE L2 0 3313 3224 831 162 21 0 chr1 121304995 121305137 -121359216 + Tigger3(Golem) DNA MER2_type 2894 3038 0 4472 248 52 26 chr1 121305140 121305400 -121358953 + L1MEc LINE L1 574 826 -5389 1574 199 57 0 chr1 121305400 121305682 -121358671 + AluJb SINE Alu 13 310 -2 4472 248 52 26 chr1 121305682 121307229 -121357124 + L1MEc LINE L1 826 2470 -3745 2630 55 0 3 chr1 121307229 121307536 -121356817 + AluY SINE Alu 1 306 -5 4472 248 52 26 chr1 121307536 121308766 -121355587 + L1MEc LINE L1 2470 3666 -2549 733 224 207 49 chr1 121308765 121309069 -121355284 + L1MEc LINE L1 3918 4269 -1946 * 306 240 0 96 chr1 121309090 121309215 -121355138 + MIR SINE MIR 150 262 0 197 244 47 93 chr1 121309422 121309508 -121354845 - MIR SINE MIR -70 192 111 217 182 0 0 chr1 121309844 121309877 -121354476 + L2 LINE L2 3228 3260 -12 241 280 108 11 chr1 121310199 121310292 -121354061 - L2 LINE L2 -46 3226 3125 1179 257 96 52 chr1 121310845 121311370 -121352983 - L2 LINE L2 0 3313 2762 412 280 33 89 chr1 121312823 121313037 -121351316 - MIR SINE MIR -6 256 55 578 239 75 10 chr1 121313170 121313451 -121350902 - LTR33 LTR ERVL -58 463 86 204 156 0 0 chr1 121314193 121314223 -121350130 - L2 LINE L2 0 3272 3243 957 199 71 18 chr1 121314223 121314449 -121349904 + MIR SINE MIR 1 238 -24 560 289 64 11 chr1 121314476 121314663 -121349690 + MIR SINE MIR 29 225 -37 596 223 74 20 chr1 121314775 121314923 -121349430 + MIR3 SINE MIR 38 193 -15 366 295 58 47 chr1 121315883 121316073 -121348280 - L2 LINE L2 0 3313 3122 484 274 201 6 chr1 121317014 121317178 -121347175 - MIR SINE MIR -54 208 13 530 246 138 24 chr1 121317237 121317404 -121346949 + MIR SINE MIR 6 191 -71 499 268 202 10 chr1 121318053 121318251 -121346102 - MIR SINE MIR 0 262 27 358 274 92 12 chr1 121318311 121318475 -121345878 - MIR3 SINE MIR -26 182 6 702 306 10 10 chr1 121318743 121318949 -121345404 - MIR SINE MIR -8 254 49 215 208 0 38 chr1 121319366 121319419 -121344934 + CT-rich Low_complexity Low_complexity 2 52 0 376 223 160 0 chr1 121319419 121319513 -121344840 - L2 LINE L2 -1 3271 3163 1075 236 111 43 chr1 121319592 121320015 -121344338 + L2 LINE L2 2862 3313 0 250 299 34 48 chr1 121322438 121322582 -121341771 + MIR SINE MIR 55 196 -62 860 225 33 70 chr1 121322811 121323140 -121341213 + L1MC4a LINE L1 5869 6185 -1623 737 302 48 32 chr1 121323252 121323504 -121340849 + MIR SINE MIR 7 262 0 784 192 67 56 chr1 121323670 121324078 -121340275 - MLT1D LTR MaLR 0 505 1 1754 133 20 3 chr1 121324151 121324452 -121339901 - L1MB3 LINE L1 -43 6140 5835 203 324 42 35 chr1 121324674 121324713 -121339640 + MIR SINE MIR 116 153 -109 1665 275 15 87 chr1 121324713 121325117 -121339236 + THE1C LTR MaLR 1 375 0 203 324 42 35 chr1 121325117 121325219 -121339134 + MIR SINE MIR 153 258 -4 249 338 0 0 chr1 121325911 121325988 -121338365 + MIR3 SINE MIR 78 154 -54 202 229 21 0 chr1 121326431 121326479 -121337874 + (TG)n Simple_repeat Simple_repeat 2 50 0 903 292 34 9 chr1 121326537 121326770 -121337583 + MIR SINE MIR 24 262 0 23 33 0 0 chr1 121327358 121327388 -121336965 + AT_rich Low_complexity Low_complexity 1 30 0 222 311 27 0 chr1 121327432 121327506 -121336847 - MIR SINE MIR -14 248 173 229 235 137 29 chr1 121328210 121328312 -121336041 - L2 LINE L2 -227 3045 2933 336 188 106 0 chr1 121328629 121328714 -121335639 + L2 LINE L2 3174 3267 -5 187 358 67 39 chr1 121329724 121329903 -121334450 + L2 LINE L2 2715 2898 -416 440 269 9 0 chr1 121329921 121330029 -121334324 - MIR3 SINE MIR -5 203 95 1072 260 128 0 chr1 121330169 121330681 -121333672 - L2 LINE L2 -2 3311 2722 424 198 59 10 chr1 121330795 121330896 -121333457 + MER5A DNA MER1_type 4 109 -80 6575 55 12 5 chr1 121331030 121332435 -121331918 - L1PA7 LINE L1 0 6154 4748 456 254 23 8 chr1 121332504 121332634 -121331719 + MER5B DNA MER1_type 1 132 -46 184 194 0 0 chr1 121332668 121332704 -121331649 + MER5B DNA MER1_type 138 173 -5 519 264 39 0 chr1 121332723 121332852 -121331501 + L2 LINE L2 3175 3308 -5 242 321 0 24 chr1 121333923 121334007 -121330346 - MIR SINE MIR -3 259 178 * 384 250 80 85 chr1 121334006 121334182 -121330171 - L2 LINE L2 0 3313 3139 311 268 65 46 chr1 121334586 121334739 -121329614 - MIR SINE MIR -98 164 9 590 295 0 0 chr1 121335210 121335359 -121328994 - MIR3 SINE MIR -20 188 40 319 257 153 42 chr1 121335574 121335718 -121328635 - MIR SINE MIR -91 171 12 250 231 0 46 chr1 121336501 121336566 -121327787 + L2 LINE L2 3211 3272 0 267 250 16 0 chr1 121336789 121336853 -121327500 + L2 LINE L2 3247 3311 -2 409 267 30 30 chr1 121337216 121337351 -121327002 - MIR SINE MIR -20 242 108 741 216 106 47 chr1 121337679 121337915 -121326438 + MIR SINE MIR 13 262 0 194 300 89 0 chr1 121338398 121338488 -121325865 - L3b LINE CR1 -249 1334 1237 853 210 14 14 chr1 121338737 121338956 -121325397 - L1 LINE L1 -3818 2328 2110 539 226 95 7 chr1 121339062 121339199 -121325154 - L2 LINE L2 0 3313 3165 448 314 70 17 chr1 121339182 121339434 -121324919 - MIR SINE MIR 0 262 1 * 221 348 43 43 chr1 121341485 121341600 -121322753 + L2 LINE L2 2948 3062 -210 699 209 43 71 chr1 121341604 121341706 -121322647 + MER112 DNA MER1_type 3 106 -154 2186 117 0 0 chr1 121341706 121342013 -121322340 - AluSx SINE Alu 0 307 1 699 209 43 71 chr1 121342013 121342162 -121322191 + MER112 DNA MER1_type 106 248 -12 231 274 88 0 chr1 121342241 121342343 -121322010 + L2 LINE L2 3162 3272 0 183 267 99 10 chr1 121342539 121342640 -121321713 - L2 LINE L2 -782 2532 2423 2009 111 37 0 chr1 121342702 121342973 -121321380 + AluSq SINE Alu 12 292 -21 243 0 0 0 chr1 121343089 121343116 -121321237 + (A)n Simple_repeat Simple_repeat 1 27 0 235 280 27 13 chr1 121343126 121343201 -121321152 - MIR SINE MIR 0 262 187 222 306 0 0 chr1 121343201 121343263 -121321090 - MIR SINE MIR -181 81 20 860 233 165 24 chr1 121343491 121343830 -121320523 - L2 LINE L2 0 3313 2927 644 262 56 14 chr1 121344861 121345075 -121319278 - MIR SINE MIR 0 262 32 467 247 153 9 chr1 121345827 121346221 -121318132 + LTR33 LTR ERVL 26 521 0 330 307 31 126 chr1 121346959 121347077 -121317276 + L2 LINE L2 2918 3046 -226 1692 164 0 19 chr1 121347077 121347372 -121316981 + AluJo SINE Alu 21 310 0 330 307 31 126 chr1 121347372 121347640 -121316713 + L2 LINE L2 3046 3268 -4 238 323 48 40 chr1 121347697 121347821 -121316532 - L2 LINE L2 -11 3261 3137 660 267 0 28 chr1 121347853 121348029 -121316324 - MIR SINE MIR 0 262 92 263 238 16 16 chr1 121348774 121348837 -121315516 - MIR SINE MIR -58 150 88 402 277 38 28 chr1 121349327 121349486 -121314867 + MIR3 SINE MIR 45 205 -3 996 211 59 0 chr1 121349643 121349847 -121314506 + MER58A DNA MER1_type 9 224 0 2356 93 40 48 chr1 121351740 121352118 -121312235 + THE1C LTR MaLR 1 375 0 194 272 132 22 chr1 121353654 121353790 -121310563 + MIR3 SINE MIR 10 160 -48 401 302 102 19 chr1 121354024 121354238 -121310115 - MIR SINE MIR -17 245 1 965 240 85 106 chr1 121354642 121355197 -121309156 + MLT1H LTR MaLR 7 549 0 862 203 71 19 chr1 121355280 121355492 -121308861 + MIR SINE MIR 13 235 -27 405 293 14 34 chr1 121355551 121355698 -121308655 + L3b LINE CR1 1263 1406 -177 459 0 0 0 chr1 121357369 121357420 -121306933 + (CA)n Simple_repeat Simple_repeat 1 51 0 211 188 21 0 chr1 121357812 121357860 -121306493 - L2 LINE L2 -17 3255 3207 210 390 10 10 chr1 121358690 121358790 -121305563 + L3 LINE CR1 1339 1438 -139 2273 97 13 13 chr1 121358793 121359101 -121305252 + AluSx SINE Alu 5 312 0 570 201 50 7 chr1 121359713 121359852 -121304501 - MIR3 SINE MIR -41 167 23 261 311 245 14 chr1 121361368 121361580 -121302773 + MIR SINE MIR 2 262 0 324 320 25 8 chr1 121361617 121361739 -121302614 - L3b LINE CR1 -227 1356 1233 319 300 90 40 chr1 121361890 121361934 -121302419 + L2 LINE L2 3102 3142 -171 1948 138 0 0 chr1 121361934 121362209 -121302144 - AluSq SINE Alu 0 313 39 319 300 90 40 chr1 121362209 121362364 -121301989 + L2 LINE L2 3142 3311 -2 287 180 0 0 chr1 121362403 121362453 -121301900 + L2 LINE L2 3004 3053 -219 259 307 95 29 chr1 121362588 121362725 -121301628 + MIR SINE MIR 28 173 -89 21 0 0 0 chr1 121363141 121363162 -121301191 + AT_rich Low_complexity Low_complexity 1 21 0 205 178 0 0 chr1 121363226 121363271 -121301082 + A-rich Low_complexity Low_complexity 1 45 0 276 345 145 28 chr1 121363463 121363961 -121300392 + L2 LINE L2 2148 2703 -611 2839 7 0 3 chr1 121364099 121364403 -121299950 - AluYa5 SINE Alu -8 303 1 182 195 24 0 chr1 121364562 121364603 -121299750 - L2 LINE L2 -1 3312 3271 226 290 38 53 chr1 121364663 121364794 -121299559 + L2 LINE L2 3184 3312 -1 180 263 53 53 chr1 121367002 121367078 -121297275 + L2 LINE L2 3181 3256 -16 1239 205 134 78 chr1 121367379 121368109 -121296244 + L2 LINE L2 2511 3311 -2 245 284 60 0 chr1 121368815 121368882 -121295471 + L2 LINE L2 3242 3312 -1 586 300 36 18 chr1 121371518 121371738 -121292615 + MIR SINE MIR 20 243 -19 315 0 0 0 chr1 121372135 121372170 -121292183 + (TG)n Simple_repeat Simple_repeat 1 35 0 634 262 97 15 chr1 121376926 121377132 -121287221 - MIR SINE MIR 0 262 40 391 343 52 14 chr1 121377128 121377341 -121287012 - MIR SINE MIR -14 248 28 * 198 293 188 38 chr1 121377601 121377734 -121286619 + MIR3 SINE MIR 37 189 -19 327 326 29 7 chr1 121378117 121378255 -121286098 - MIR SINE MIR -10 252 112 387 293 98 29 chr1 121378424 121378598 -121285755 + MIR3 SINE MIR 17 202 -6 34 0 0 0 chr1 121381450 121381484 -121282869 + GC_rich Low_complexity Low_complexity 1 34 0 390 134 0 0 chr1 121381655 121381722 -121282631 + (CCG)n Simple_repeat Simple_repeat 3 69 0 23 68 0 0 chr1 121381804 121381848 -121282505 + GC_rich Low_complexity Low_complexity 1 44 0 246 116 0 0 chr1 121382120 121382163 -121282190 + (TG)n Simple_repeat Simple_repeat 1 43 0 219 303 8 25 chr1 121382278 121382400 -121281953 + G-rich Low_complexity Low_complexity 4 123 0 1092 255 16 4 chr1 121384967 121385222 -121279131 + MIR SINE MIR 5 262 0 1984 163 34 3 chr1 121386183 121386533 -121277820 + MSTB LTR MaLR 1 361 -65 303 325 26 0 chr1 121387308 121387422 -121276931 + L2 LINE L2 2118 2234 -1080 350 316 85 102 chr1 121387559 121388031 -121276322 + L2 LINE L2 2807 3270 -2 661 216 112 29 chr1 121388584 121388825 -121275528 + MIR SINE MIR 1 261 -1 585 258 39 0 chr1 121389795 121389977 -121274376 - L1MC5 LINE L1 -48 7913 7725 234 0 0 0 chr1 121390208 121390234 -121274119 + (T)n Simple_repeat Simple_repeat 1 26 0 333 250 229 64 chr1 121390307 121390423 -121273930 - MIR SINE MIR -42 220 124 1150 258 170 10 chr1 121390423 121390739 -121273614 + MLT1J2 LTR MaLR 1 392 -58 180 0 0 0 chr1 121390739 121390759 -121273594 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1150 258 170 10 chr1 121390759 121390830 -121273523 + MLT1J2 LTR MaLR 392 450 0 333 250 229 64 chr1 121390830 121390901 -121273452 - MIR SINE MIR -138 124 2 955 180 35 35 chr1 121391000 121391200 -121273153 - MER3 DNA MER1_type -9 200 1 330 360 62 27 chr1 121391597 121391948 -121272405 + L2 LINE L2 2669 3037 -235 327 238 151 63 chr1 121393225 121393351 -121271002 - L2 LINE L2 0 3272 3136 292 180 300 20 chr1 121393443 121393543 -121270810 - MIR SINE MIR -77 185 58 731 316 76 29 chr1 121393567 121394129 -121270224 - L2 LINE L2 -177 3095 2475 408 319 93 50 chr1 121394632 121394996 -121269357 + L2 LINE L2 2887 3266 -6 828 243 83 18 chr1 121395679 121395897 -121268456 - MIR SINE MIR -23 239 8 211 283 0 0 chr1 121396551 121396597 -121267756 - L2 LINE L2 -2 3270 3225 347 384 55 12 chr1 121397180 121397435 -121266918 - L2 LINE L2 -953 2361 2096 578 224 17 0 chr1 121397560 121397676 -121266677 - MER5A DNA MER1_type -1 188 71 1176 66 11 22 chr1 121397681 121397862 -121266491 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 690 226 37 26 chr1 121397865 121398055 -121266298 - AluJb SINE Alu 0 312 121 271 214 18 18 chr1 121398055 121398111 -121266242 - MER5A DNA MER1_type -129 60 5 828 256 35 0 chr1 121400002 121400205 -121264148 + MIR SINE MIR 52 261 -1 195 204 0 0 chr1 121400206 121400255 -121264098 + (TTA)n Simple_repeat Simple_repeat 1 49 0 745 56 9 9 chr1 121401130 121401238 -121263115 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 845 278 87 21 chr1 121401270 121401695 -121262658 - L1MC4a LINE L1 -1793 6015 5563 189 429 0 0 chr1 121401697 121401809 -121262544 - MIR SINE MIR -57 151 40 2479 72 7 0 chr1 121401857 121402162 -121262191 + AluY SINE Alu 1 307 -4 218 342 59 55 chr1 121402233 121402435 -121261918 - L2 LINE L2 -55 3217 3015 305 283 48 55 chr1 121402636 121402781 -121261572 + MIR3 SINE MIR 60 203 -5 236 342 54 12 chr1 121402981 121403142 -121261211 - MIR SINE MIR -46 216 42 272 248 57 38 chr1 121404867 121404972 -121259381 - MLT1H LTR MaLR -8 541 435 467 196 239 0 chr1 121405065 121405228 -121259125 - MLT1H LTR MaLR -324 225 24 250 341 0 0 chr1 121406776 121406867 -121257486 + L3b LINE CR1 1311 1401 -182 1206 153 15 0 chr1 121407329 121407525 -121256828 - LTR26 LTR ERV1 0 603 405 2534 227 155 29 chr1 121407661 121408764 -121255589 + L2 LINE L2 2065 3313 0 232 318 157 70 chr1 121408852 121409138 -121255215 + L2 LINE L2 2925 3235 -37 510 312 77 12 chr1 121409493 121409663 -121254690 - MIR3 SINE MIR -12 196 16 381 149 0 0 chr1 121410023 121410090 -121254263 + (TC)n Simple_repeat Simple_repeat 2 68 0 939 261 79 76 chr1 121410402 121410780 -121253573 + L2 LINE L2 2549 2925 -388 1919 174 30 19 chr1 121410780 121411141 -121253212 + MLT1A1 LTR MaLR 1 365 0 939 261 79 76 chr1 121411141 121411491 -121252862 + L2 LINE L2 2925 3307 -6 355 253 0 0 chr1 121411513 121411592 -121252761 - MIR SINE MIR 0 262 184 765 214 148 16 chr1 121412317 121412560 -121251793 + MER33 DNA MER1_type 28 302 -22 573 214 21 28 chr1 121413089 121413234 -121251119 - L1ME2 LINE L1 -9 6155 6012 351 44 0 0 chr1 121413659 121413704 -121250649 + (TG)n Simple_repeat Simple_repeat 1 45 0 678 296 88 45 chr1 121413777 121414081 -121250272 + L2 LINE L2 2804 3130 -183 2179 120 30 0 chr1 121414081 121414380 -121249973 + AluSg SINE Alu 1 308 -2 678 296 88 45 chr1 121414380 121414474 -121249879 + L2 LINE L2 3130 3219 -94 233 325 65 0 chr1 121415309 121415386 -121248967 + MER91C DNA MER1_type 31 112 -28 1618 172 28 17 chr1 121417291 121417582 -121246771 + AluJo SINE Alu 1 294 -18 592 244 116 18 chr1 121417734 121417898 -121246455 - MIR SINE MIR -50 212 33 626 280 29 7 chr1 121419537 121419722 -121244631 + MIR SINE MIR 4 191 -62 337 279 57 25 chr1 121419723 121419881 -121244472 - L1ME3A LINE L1 0 6170 6008 2301 176 114 15 chr1 121420009 121420481 -121243872 - MLT2B1 LTR ERVL 0 520 2 215 329 29 0 chr1 121420681 121420751 -121243602 - L3 LINE CR1 -4 1573 1502 294 326 50 21 chr1 121421247 121421388 -121242965 + L3 LINE CR1 1330 1474 -103 242 315 171 14 chr1 121421718 121421864 -121242489 + MIR SINE MIR 75 243 -19 243 204 0 0 chr1 121422719 121422773 -121241580 + (CA)n Simple_repeat Simple_repeat 2 55 0 182 133 0 0 chr1 121422975 121423005 -121241348 - L2 LINE L2 -216 3056 3027 416 274 52 37 chr1 121423597 121423732 -121240621 - L2 LINE L2 0 3272 3136 208 274 53 21 chr1 121424621 121424716 -121239637 + L2 LINE L2 1169 1266 -2048 510 313 94 21 chr1 121425518 121425751 -121238602 + MIR SINE MIR 2 251 -11 223 250 0 19 chr1 121426062 121426114 -121238239 + L2 LINE L2 3213 3263 -9 253 293 93 21 chr1 121426580 121426720 -121237633 - MIR SINE MIR -2 260 111 708 132 132 0 chr1 121427135 121427241 -121237112 - FAM SINE Alu -60 125 6 312 70 0 0 chr1 121427382 121427425 -121236928 + (TC)n Simple_repeat Simple_repeat 2 44 0 22 56 0 0 chr1 121428365 121428401 -121235952 + AT_rich Low_complexity Low_complexity 1 36 0 505 272 49 23 chr1 121428786 121428969 -121235384 + MIR SINE MIR 3 195 -67 1849 151 18 30 chr1 121428969 121429306 -121235047 - MER1B DNA MER1_type -4 333 1 505 272 49 23 chr1 121429306 121429366 -121234987 + MIR SINE MIR 195 252 -10 2130 124 30 0 chr1 121429897 121430196 -121234157 + AluSg SINE Alu 1 308 -2 288 300 44 4 chr1 121430378 121430501 -121233852 + MLT1I LTR MaLR 63 171 -238 343 252 16 8 chr1 121430521 121430648 -121233705 - AluSp/q SINE Alu 0 303 176 327 312 25 4 chr1 121430752 121430879 -121233474 + MLT1I LTR MaLR 63 224 -238 2941 6 0 0 chr1 121430882 121431193 -121233160 - AluYa5 SINE Alu 0 311 1 291 154 103 132 chr1 121431315 121431400 -121232953 + MLT1I LTR MaLR 278 359 -50 2435 92 0 0 chr1 121431400 121431705 -121232648 - AluY SINE Alu -6 305 1 291 154 103 132 chr1 121431705 121431755 -121232598 + MLT1I LTR MaLR 359 409 0 249 191 0 0 chr1 121431758 121431805 -121232548 + L2 LINE L2 3225 3271 -1 216 0 0 0 chr1 121432189 121432213 -121232140 + (T)n Simple_repeat Simple_repeat 1 24 0 493 302 70 9 chr1 121435283 121435498 -121228855 + MIR SINE MIR 35 262 0 203 325 65 0 chr1 121437159 121437236 -121227117 + MER91C DNA MER1_type 31 112 -28 1585 172 28 17 chr1 121439142 121439433 -121224920 + AluJo SINE Alu 1 294 -18 517 244 116 18 chr1 121439585 121439749 -121224604 - MIR SINE MIR -50 212 33 553 279 30 6 chr1 121441408 121441573 -121222780 + MIR SINE MIR 23 191 -71 374 279 57 25 chr1 121441574 121441732 -121222621 - L1ME3A LINE L1 0 6170 6008 2262 176 114 15 chr1 121441860 121442332 -121222021 - MLT2B1 LTR ERVL 0 520 2 184 329 29 0 chr1 121442532 121442602 -121221751 - L3 LINE CR1 -4 1573 1502 229 326 50 21 chr1 121443098 121443239 -121221114 + L3 LINE CR1 1330 1474 -103 220 338 6 3 chr1 121443569 121443654 -121220699 + MIR SINE MIR 75 149 -59 204 97 0 0 chr1 121444596 121444627 -121219726 + (CA)n Simple_repeat Simple_repeat 1 31 0 362 274 52 37 chr1 121445451 121445586 -121218767 - L2 LINE L2 0 3272 3136 432 324 91 21 chr1 121447372 121447613 -121216740 + MIR SINE MIR 2 259 -3 212 315 21 63 chr1 121448527 121448670 -121215683 + L2 LINE L2 2917 3053 -219 237 350 69 44 chr1 121448704 121448864 -121215489 + L2 LINE L2 2900 3063 -250 349 293 38 0 chr1 121449138 121449244 -121215109 - LTR16A LTR ERVL -214 236 127 198 306 28 14 chr1 121451998 121452070 -121212283 + MIR3 SINE MIR 3 75 -133 633 234 109 10 chr1 121452474 121452702 -121211651 + L1ME3 LINE L1 5907 6170 0 738 243 122 22 chr1 121453669 121453891 -121210462 + MIR SINE MIR 16 259 -3 19583 33 0 1 chr1 121454709 121457801 -121206552 + L1PA3 LINE L1 3065 6155 0 312 281 12 38 chr1 121457876 121458036 -121206317 + L1PA8 LINE L1 5861 6016 -156 * 1086 206 26 34 chr1 121457909 121458176 -121206177 + L1PB4 LINE L1 5888 6152 -4 697 172 113 13 chr1 121458198 121458398 -121205955 + AluJo SINE Alu 120 334 0 259 303 103 18 chr1 121458585 121458750 -121205603 + L3 LINE CR1 1349 1527 -50 403 300 62 41 chr1 121458836 121459079 -121205274 - MIR SINE MIR -7 255 8 1634 190 48 41 chr1 121459585 121460000 -121204353 + LTR52 LTR ERVL 1 418 -3 3400 135 21 67 chr1 121460000 121460629 -121203724 - MER7C DNA MER2_type 0 602 3 4776 224 53 107 chr1 121460961 121461335 -121203018 - L1MEc LINE L1 -1945 4270 3878 441 171 37 0 chr1 121461335 121461417 -121202936 - U13 snRNA snRNA 0 104 20 4776 224 53 107 chr1 121461417 121463081 -121201272 - L1MEc LINE L1 -2337 3878 2381 1020 164 61 14 chr1 121463081 121463295 -121201058 - L1MB2 LINE L1 -3 6168 5945 4776 224 53 107 chr1 121463295 121463982 -121200371 - L1MEc LINE L1 -3834 2381 1659 2590 260 20 43 chr1 121464029 121465030 -121199323 - L1MEc LINE L1 -4078 2318 1341 1213 296 64 17 chr1 121465079 121465488 -121198865 - LTR16A LTR ERVL -6 444 17 255 317 158 0 chr1 121465756 121465876 -121198477 - MIR3 SINE MIR -31 177 39 2537 24 41 0 chr1 121466000 121466290 -121198063 + AluY SINE Alu 1 302 -9 1971 158 23 18 chr1 121466471 121466813 -121197540 - MER2 DNA MER2_type 0 344 1 427 342 40 0 chr1 121466994 121467193 -121197160 - L3 LINE CR1 -128 1449 1243 21 36 0 0 chr1 121468456 121468484 -121195869 + AT_rich Low_complexity Low_complexity 1 28 0 181 194 0 0 chr1 121469036 121469067 -121195286 - L2 LINE L2 -14 3299 3269 258 272 12 0 chr1 121469302 121469383 -121194970 + LTR67 LTR ERVL 459 540 -17 1877 248 8 11 chr1 121470998 121471470 -121192883 - Charlie4a DNA MER1_type -1 507 37 320 279 16 25 chr1 121471591 121471713 -121192640 + L2 LINE L2 2308 2428 -886 538 221 48 35 chr1 121471781 121471926 -121192427 - L2 LINE L2 -5 3308 3162 404 304 169 52 chr1 121471972 121472661 -121191692 + L2 LINE L2 2529 3306 -7 312 319 89 60 chr1 121472825 121473195 -121191158 - L2 LINE L2 0 3313 2933 1241 201 60 84 chr1 121473654 121474037 -121190316 - MLT1B LTR MaLR -16 374 1 214 269 30 0 chr1 121474293 121474360 -121189993 - MIR SINE MIR -73 135 67 274 292 187 34 chr1 121475191 121475458 -121188895 + L2 LINE L2 3006 3313 0 887 323 129 6 chr1 121475672 121476389 -121187964 - L2 LINE L2 0 3272 2453 491 258 129 46 chr1 121477004 121477244 -121187109 - MIR SINE MIR 0 262 3 211 349 0 24 chr1 121478014 121478097 -121186256 - L2 LINE L2 -37 3235 3155 208 284 21 42 chr1 121478186 121478281 -121186072 + MIR SINE MIR 58 150 -112 183 152 0 0 chr1 121478279 121478312 -121186041 - L2 LINE L2 0 3313 3281 * 301 316 29 37 chr1 121478339 121478475 -121185878 - L2 LINE L2 -261 3052 2918 1137 213 27 18 chr1 121480025 121480165 -121184188 + MER58A DNA MER1_type 1 145 -2275 1581 149 81 45 chr1 121480165 121480500 -121183853 - MER7A DNA MER2_type -1 345 1 1137 213 27 18 chr1 121480500 121480580 -121183773 + MER58A DNA MER1_type 145 223 -1 761 243 119 19 chr1 121480695 121480905 -121183448 + MIR SINE MIR 13 243 -19 443 214 200 21 chr1 121480935 121481080 -121183273 - MIR SINE MIR -27 235 65 186 288 30 30 chr1 121482681 121482747 -121181606 - L3b LINE CR1 -174 1409 1344 363 44 0 0 chr1 121483263 121483308 -121181045 + (GA)n Simple_repeat Simple_repeat 2 46 0 237 241 0 0 chr1 121483444 121483502 -121180851 - L1MC5 LINE L1 -76 7885 7828 1419 117 17 22 chr1 121483538 121483768 -121180585 - AluSq SINE Alu -12 301 73 385 161 35 81 chr1 121483793 121483880 -121180473 + MER5A DNA MER1_type 79 161 -28 226 254 28 56 chr1 121483971 121484042 -121180311 - L2 LINE L2 -5 3308 3240 208 154 26 0 chr1 121484573 121484612 -121179741 + GA-rich Low_complexity Low_complexity 4 43 0 822 269 5 0 chr1 121484786 121484972 -121179381 + MER5A DNA MER1_type 3 189 0 462 243 45 57 chr1 121484984 121485161 -121179192 + MER5B DNA MER1_type 4 178 0 932 155 0 6 chr1 121485999 121486180 -121178173 + CT-rich Low_complexity Low_complexity 1 180 0 339 388 40 22 chr1 121486625 121486936 -121177417 - L2 LINE L2 -189 3083 2769 280 323 132 42 chr1 121487356 121487545 -121176808 - MIR SINE MIR -54 208 3 311 325 77 41 chr1 121488240 121488436 -121175917 - MIR SINE MIR -56 206 4 207 325 32 96 chr1 121488546 121488826 -121175527 + L2 LINE L2 3006 3267 -5 181 256 70 0 chr1 121490159 121490202 -121174151 - L2 LINE L2 -5 3267 3222 547 305 15 10 chr1 121490257 121490449 -121173904 - MIR SINE MIR 0 262 70 671 242 112 28 chr1 121490515 121490561 -121173792 + MIR SINE MIR 24 65 -197 1972 112 7 10 chr1 121490561 121490855 -121173498 - AluSg SINE Alu -17 293 1 671 242 112 28 chr1 121490855 121491023 -121173330 + MIR SINE MIR 65 256 -6 2034 255 103 50 chr1 121492262 121493032 -121171321 - HAL1 LINE L1 -5 2502 1774 2070 124 0 3 chr1 121493032 121493331 -121171022 - AluSx SINE Alu -14 298 1 2034 255 103 50 chr1 121493331 121494034 -121170319 - HAL1 LINE L1 -733 1774 868 288 236 0 42 chr1 121494032 121494104 -121170249 - HAL1 LINE L1 -1959 548 480 * 1599 156 0 4 chr1 121494165 121494422 -121169931 + AluJo SINE Alu 39 294 -18 497 260 47 30 chr1 121494434 121494603 -121169750 - HAL1 LINE L1 -2042 465 294 327 281 76 88 chr1 121495243 121495481 -121168872 - HAL1 LINE L1 -2257 250 16 42966 37 24 1 chr1 121496131 121502142 -121162211 + L1PA2 LINE L1 2 6150 -5 1022 109 11 6 chr1 121502123 121502297 -121162056 + L1MA3 LINE L1 6031 6205 -100 * 264 352 46 0 chr1 121502540 121502648 -121161705 + L2 LINE L2 3197 3309 -4 281 252 176 50 chr1 121502935 121503054 -121161299 - MIR SINE MIR -87 175 42 206 301 165 29 chr1 121504462 121504565 -121159788 + MIR SINE MIR 32 148 -60 1328 7 0 0 chr1 121504571 121504720 -121159633 - AluYa5 SINE Alu -11 300 152 828 284 68 108 chr1 121505306 121506094 -121158259 + L2 LINE L2 2141 2897 -417 1922 126 171 27 chr1 121506275 121506649 -121157704 - MSTA LTR MaLR 0 428 1 9651 138 11 34 chr1 121506649 121508264 -121156089 - MSTA-int LTR MaLR 0 1580 3 1885 144 51 38 chr1 121508266 121508635 -121155718 - THE1C LTR MaLR 0 375 5 190 355 78 34 chr1 121508693 121508989 -121155364 + L2 LINE L2 3005 3313 0 251 174 22 0 chr1 121509283 121509329 -121155024 - L2 LINE L2 -2 3311 3265 1055 134 6 0 chr1 121509709 121509761 -121154592 + (GGAA)n Simple_repeat Simple_repeat 1 232 0 1055 134 6 0 chr1 121509761 121509940 -121154413 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 433 252 47 0 chr1 121510859 121510966 -121153387 + MER5A DNA MER1_type 77 188 -1 274 204 43 54 chr1 121510888 121510981 -121153372 - MER5A DNA MER1_type -97 92 1 * 958 213 19 32 chr1 121511006 121511222 -121153131 - MER20 DNA MER1_type -6 213 1 568 269 38 6 chr1 121511233 121511393 -121152960 + MIR SINE MIR 21 185 -77 365 276 6 39 chr1 121512238 121512419 -121151934 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 353 273 45 0 chr1 121512582 121512670 -121151683 - MIR SINE MIR -149 113 22 207 69 0 0 chr1 121513501 121513530 -121150823 + (TTATA)n Simple_repeat Simple_repeat 4 32 0 208 133 0 50 chr1 121514422 121514482 -121149871 + (TTAAG)n Simple_repeat Simple_repeat 2 58 0 1289 256 205 23 chr1 121515510 121516042 -121148311 - L3 LINE CR1 -3 1574 946 23 33 0 0 chr1 121516239 121516269 -121148084 + AT_rich Low_complexity Low_complexity 1 30 0 494 280 42 55 chr1 121516746 121516982 -121147371 - LTR16C LTR ERVL -50 441 209 446 322 28 33 chr1 121518058 121518247 -121146106 - MIR SINE MIR -63 145 5 189 354 114 11 chr1 121518502 121518677 -121145676 - L2 LINE L2 -339 2975 2783 280 324 224 6 chr1 121518923 121519102 -121145251 + MIR SINE MIR 9 226 -36 1075 320 15 3 chr1 121519237 121519571 -121144782 - L3 LINE CR1 -312 1265 928 271 365 0 0 chr1 121519743 121519847 -121144506 + MIR SINE MIR 48 151 -111 3263 63 16 5 chr1 121519858 121520285 -121144068 + L1PA8 LINE L1 5738 6169 -3 253 200 0 0 chr1 121520490 121520535 -121143818 + L2 LINE L2 3269 3313 0 778 295 98 7 chr1 121520540 121520825 -121143528 - L3 LINE CR1 -687 890 580 236 386 76 10 chr1 121521038 121521235 -121143118 + L2 LINE L2 2645 2854 -460 234 91 0 0 chr1 121521622 121521655 -121142698 + (GA)n Simple_repeat Simple_repeat 1 33 0 240 281 214 0 chr1 121521726 121521815 -121142538 - MIR SINE MIR -79 129 22 2225 95 0 3 chr1 121523507 121523802 -121140551 - AluY SINE Alu -17 294 1 3028 84 19 17 chr1 121524328 121524746 -121139607 + MLT2A1 LTR ERVL 1 419 -25 255 170 0 0 chr1 121524746 121524793 -121139560 + (TA)n Simple_repeat Simple_repeat 1 47 0 342 339 69 58 chr1 121524896 121525173 -121139180 + L2 LINE L2 2992 3271 -1 342 238 184 14 chr1 121525748 121525895 -121138458 + MIR SINE MIR 73 244 -18 2188 84 0 0 chr1 121526720 121527007 -121137346 - AluY SINE Alu -8 303 17 464 237 0 0 chr1 121528654 121528768 -121135585 - L1MC4 LINE L1 -6 8036 7923 481 296 91 6 chr1 121529176 121529352 -121135001 + MIR SINE MIR 70 260 -2 227 130 0 22 chr1 121529944 121529990 -121134363 + (TGGGGG)n Simple_repeat Simple_repeat 1 45 0 580 272 52 6 chr1 121530341 121530514 -121133839 + MIR3 SINE MIR 13 193 -15 771 260 24 40 chr1 121531465 121531701 -121132652 + MIR SINE MIR 7 237 -25 183 156 0 0 chr1 121531711 121531743 -121132610 + (CTA)n Simple_repeat Simple_repeat 1 32 0 214 262 16 0 chr1 121531743 121531804 -121132549 - MIR SINE MIR -129 79 18 855 262 80 0 chr1 121532435 121532660 -121131693 - MIR SINE MIR -2 260 18 402 301 41 0 chr1 121533651 121533774 -121130579 - MIR SINE MIR -125 137 10 876 198 11 103 chr1 121534168 121534441 -121129912 - MIR SINE MIR 0 262 15 191 200 40 40 chr1 121535099 121535149 -121129204 + L2 LINE L2 3223 3272 0 666 278 113 46 chr1 121535241 121535673 -121128680 - LTR33 LTR ERVL -27 494 34 291 254 14 0 chr1 121536390 121536461 -121127892 - L2 LINE L2 -1 3312 3241 1219 271 96 43 chr1 121536914 121537199 -121127154 + L2 LINE L2 2370 2638 -675 2267 69 0 0 chr1 121537199 121537507 -121126846 - AluY SINE Alu 0 313 6 1219 271 96 43 chr1 121537507 121538119 -121126234 + L2 LINE L2 2638 3313 0 445 271 45 26 chr1 121538765 121538920 -121125433 + MIR3 SINE MIR 39 196 -12 727 239 139 4 chr1 121538924 121539154 -121125199 + MIR SINE MIR 2 262 0 706 272 107 12 chr1 121539852 121540095 -121124258 - LTR16C LTR ERVL -29 462 197 246 271 129 84 chr1 121540102 121540257 -121124096 - LTR16C LTR ERVL -259 232 71 569 258 85 84 chr1 121540486 121540909 -121123444 - L2 LINE L2 -115 3198 2776 1482 262 87 21 chr1 121540914 121541387 -121122966 - MLT2B1 LTR ERVL 0 520 17 1846 238 18 10 chr1 121541389 121541890 -121122463 - L2 LINE L2 -543 2771 2267 1825 146 28 3 chr1 121541938 121542226 -121122127 + AluJb SINE Alu 1 295 -17 363 266 81 14 chr1 121542462 121542596 -121121757 - MER5B DNA MER1_type -45 133 2 2432 90 0 7 chr1 121542674 121542984 -121121369 + AluSq SINE Alu 1 308 -5 258 288 152 0 chr1 121543134 121543318 -121121035 + L1ME4a LINE L1 5793 6004 -117 229 342 51 79 chr1 121543551 121543943 -121120410 - L2 LINE L2 -23 3249 2869 225 352 0 0 chr1 121543953 121544024 -121120329 - L2 LINE L2 0 3313 3243 424 263 160 0 chr1 121544065 121544221 -121120132 - MIR SINE MIR 0 262 82 263 296 95 48 chr1 121544244 121544433 -121119920 - L2 LINE L2 -108 3164 2967 433 252 130 0 chr1 121545447 121545578 -121118775 + MIR3 SINE MIR 35 182 -26 804 213 37 0 chr1 121545697 121545861 -121118492 + MER97c DNA MER1_type? 8 177 -913 228 158 18 70 chr1 121545920 121545977 -121118376 - MER113 DNA MER1_type? -108 413 360 267 203 0 0 chr1 121545989 121546053 -121118300 + T-rich Low_complexity Low_complexity 1 64 0 328 248 71 9 chr1 121547107 121547220 -121117133 - L1ME4a LINE L1 0 6121 6002 325 255 20 20 chr1 121548080 121548178 -121116175 + LTR67 LTR ERVL 425 522 -35 279 253 35 0 chr1 121549263 121549350 -121115003 - MER103 DNA DNA -2 164 75 21 57 0 0 chr1 121549497 121549532 -121114821 + AT_rich Low_complexity Low_complexity 1 35 0 1035 256 79 73 chr1 121549584 121550229 -121114124 - L1ME3A LINE L1 -112 6058 5410 249 277 32 32 chr1 121550382 121550476 -121113877 - LTR67 LTR ERVL -39 518 425 4437 146 28 36 chr1 121550867 121551295 -121113058 - L1MA4 LINE L1 -279 6021 5591 619 184 7 29 chr1 121551295 121551431 -121112922 - FLAM_C SINE Alu 0 133 1 4437 146 28 36 chr1 121551431 121552039 -121112314 - L1MA4 LINE L1 -709 5591 4991 45313 38 1 1 chr1 121552044 121558203 -121106150 - L1PA2 LINE L1 0 6155 1 549 186 101 0 chr1 121558218 121558347 -121106006 - FLAM_C SINE Alu 0 143 2 311 292 78 82 chr1 121558349 121558630 -121105723 + L1MEd LINE L1 500 779 -5751 354 208 0 0 chr1 121558630 121558696 -121105657 + AluS SINE Alu 1 59 -249 481 301 65 48 chr1 121558715 121559024 -121105329 + L1MEd LINE L1 2307 2620 -3920 2275 116 3 0 chr1 121559052 121559353 -121105000 + AluSp SINE Alu 1 302 -11 589 58 23 0 chr1 121559359 121559445 -121104908 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 4077 245 43 9 chr1 121559493 121560604 -121103749 + L1MEd LINE L1 360 1508 -5213 2088 126 17 0 chr1 121560604 121560897 -121103456 + AluSq SINE Alu 1 298 -15 625 164 0 25 chr1 121560919 121561041 -121103312 + L1MA10 LINE L1 6216 6334 0 387 268 84 0 chr1 121561049 121561228 -121103125 + L1MEd LINE L1 2726 2919 -3621 45763 68 6 2 chr1 121561543 121567173 -121097180 + HERVL-A1 LTR ERVL 1 5654 0 2815 110 47 14 chr1 121567173 121567560 -121096793 + MLT2A1 LTR ERVL 1 405 -39 195 114 0 0 chr1 121567560 121567595 -121096758 + (TA)n Simple_repeat Simple_repeat 1 35 0 2815 110 47 14 chr1 121567595 121567636 -121096717 + MLT2A1 LTR ERVL 405 443 -1 584 201 74 0 chr1 121569188 121569337 -121095016 + MIR SINE MIR 89 248 -14 2052 123 0 0 chr1 121569350 121569663 -121094690 + AluSx SINE Alu 1 313 0 685 311 114 40 chr1 121569672 121570810 -121093543 - L1M4 LINE L1 -1977 4169 2948 9713 167 13 30 chr1 121570846 121573556 -121090797 - L1PA14 LINE L1 -1 6160 3488 423 0 0 0 chr1 121573680 121573727 -121090626 + (TG)n Simple_repeat Simple_repeat 2 48 0 325 311 33 0 chr1 121573910 121574000 -121090353 - HERV16 LTR ERVL -4903 93 1 693 313 69 28 chr1 121574009 121574373 -121089980 - LTR16B LTR ERVL -26 438 60 366 299 94 12 chr1 121574665 121574909 -121089444 - L1M4 LINE L1 -3743 2403 2140 665 223 91 0 chr1 121576310 121576485 -121087868 - L2 LINE L2 0 3313 3123 564 253 41 0 chr1 121577164 121577310 -121087043 + L2 LINE L2 3162 3313 0 603 193 150 37 chr1 121577691 121577878 -121086475 - MLT1J2 LTR MaLR -242 208 1 342 248 37 9 chr1 121578164 121578273 -121086080 - L3 LINE CR1 -732 845 734 2471 124 7 60 chr1 121578749 121578788 -121085565 + MLT2D LTR ERVL 2 42 -372 2447 145 31 19 chr1 121578788 121579209 -121085144 + MSTB LTR MaLR 1 426 0 2471 124 7 60 chr1 121579209 121579605 -121084748 + MLT2D LTR ERVL 42 414 0 288 309 195 0 chr1 121579775 121579924 -121084429 - MIR SINE MIR -12 250 73 564 212 60 13 chr1 121580159 121580310 -121084043 + MIR SINE MIR 49 206 -56 1918 226 43 36 chr1 121581442 121581970 -121082383 - MER51C LTR ERV1 0 640 1 216 0 0 0 chr1 121582078 121582102 -121082251 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 448 265 95 8 chr1 121582299 121582469 -121081884 + MIR SINE MIR 14 192 -59 356 130 0 0 chr1 121582868 121582922 -121081431 - MLT2B1 LTR ERVL 0 520 467 7467 148 11 0 chr1 121582928 121584079 -121080274 + Tigger1 DNA MER2_type 1 1164 -1254 6786 193 51 13 chr1 121584081 121585202 -121079151 + L1M3f LINE L1 1 1077 -5238 1197 56 0 0 chr1 121585202 121585346 -121079007 + L1PA4 LINE L1 6010 6153 -2 6786 193 51 13 chr1 121585346 121586336 -121078017 + L1M3f LINE L1 1077 2192 -4123 1880 103 4 0 chr1 121586336 121586588 -121077765 + Tigger1 DNA MER2_type 1145 1397 -1021 3885 195 81 20 chr1 121586589 121587388 -121076965 + MER21B LTR ERV1 1 848 -15 6547 121 40 5 chr1 121587403 121588401 -121075952 + Tigger1 DNA MER2_type 1386 2418 0 398 94 71 24 chr1 121588407 121588577 -121075776 + (TA)n Simple_repeat Simple_repeat 2 179 0 204 108 81 27 chr1 121588618 121588729 -121075624 + (TA)n Simple_repeat Simple_repeat 1 117 0 303 144 48 20 chr1 121588746 121588892 -121075461 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 37 0 0 0 chr1 121588906 121588943 -121075410 + AT_rich Low_complexity Low_complexity 1 37 0 359 122 79 6 chr1 121588955 121589119 -121075234 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 253 159 37 9 chr1 121589131 121589238 -121075115 + (TATAA)n Simple_repeat Simple_repeat 4 113 0 342 195 23 39 chr1 121589275 121589403 -121074950 + (TTATA)n Simple_repeat Simple_repeat 4 129 0 386 120 16 71 chr1 121589405 121589588 -121074765 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 339 206 15 7 chr1 121589642 121589778 -121074575 + (TA)n Simple_repeat Simple_repeat 1 137 0 1962 203 65 61 chr1 121589819 121590293 -121074060 - MLT2B1 LTR ERVL -44 476 1 1807 306 59 44 chr1 121592322 121593789 -121070564 - HERVL LTR ERVL -852 4802 3318 3407 321 43 29 chr1 121593829 121595303 -121069050 - HERVL LTR ERVL -2535 3229 1735 641 225 118 30 chr1 121595351 121595520 -121068833 - MER63A DNA MER1_type -2 208 25 266 376 32 16 chr1 121595643 121595832 -121068521 - HERVL LTR ERVL -3755 1241 1050 381 364 61 24 chr1 121596100 121596479 -121067874 - HERVL LTR ERVL -4392 604 212 226 211 0 53 chr1 121596976 121597033 -121067320 + LTR48B LTR ERV1 86 139 -505 295 324 105 19 chr1 121597284 121597389 -121066964 + L2 LINE L2 3149 3262 -10 2176 184 117 56 chr1 121597407 121598014 -121066339 + LTR48B LTR ERV1 1 644 0 307 274 74 26 chr1 121598014 121598141 -121066212 - MIR SINE MIR -64 144 25 588 312 83 0 chr1 121599296 121599501 -121064852 - MIR SINE MIR -14 248 27 233 274 0 0 chr1 121599554 121599605 -121064748 - L2 LINE L2 -12 3260 3210 573 36 36 0 chr1 121599720 121599804 -121064549 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 27 29 0 0 chr1 121601039 121601073 -121063280 + AT_rich Low_complexity Low_complexity 1 34 0 717 231 75 11 chr1 121601084 121601270 -121063083 - MIR SINE MIR -24 238 41 3029 165 72 12 chr1 121602896 121603511 -121060842 + MER39 LTR ERV1 1 707 0 2323 80 0 10 chr1 121604247 121604549 -121059804 + AluY SINE Alu 1 299 -12 293 313 42 84 chr1 121604750 121605012 -121059341 - L2 LINE L2 -343 2971 2721 700 324 90 53 chr1 121605030 121605886 -121058467 - L2 LINE L2 -940 2374 1487 455 229 123 39 chr1 121607614 121607793 -121056560 - L1ME4a LINE L1 -1 6120 5927 2182 116 0 0 chr1 121608481 121608864 -121055489 + AluSp SINE Alu 1 383 0 355 196 301 0 chr1 121609348 121609491 -121054862 - L1ME4a LINE L1 -288 5833 5648 254 229 33 0 chr1 121609607 121609668 -121054685 - L2 LINE L2 0 3313 3251 195 306 69 0 chr1 121610292 121610364 -121053989 + L2 LINE L2 1353 1429 -1885 1926 185 13 42 chr1 121610428 121610807 -121053546 - MER73 LTR ERVL 0 644 277 227 209 0 0 chr1 121610809 121610852 -121053501 + CT-rich Low_complexity Low_complexity 2 44 0 1624 172 3 48 chr1 121610852 121611166 -121053187 - MER73 LTR ERVL -344 300 1 714 315 55 20 chr1 121611177 121611523 -121052830 - MLT1J LTR MaLR 0 511 154 1925 80 0 34 chr1 121611564 121611828 -121052525 + AluY SINE Alu 36 290 -21 456 294 35 6 chr1 121611893 121612063 -121052290 + MIR SINE MIR 74 248 -14 505 257 64 23 chr1 121612392 121612563 -121051790 + MIR SINE MIR 15 192 -70 318 292 29 72 chr1 121612871 121613080 -121051273 - MIR SINE MIR -14 248 49 296 333 42 17 chr1 121613114 121613234 -121051119 - MIR3 SINE MIR -42 166 44 556 264 74 12 chr1 121614232 121614395 -121049958 - MIR SINE MIR -61 201 29 600 209 65 201 chr1 121614602 121614971 -121049382 + L2 LINE L2 2995 3313 0 421 247 32 0 chr1 121615131 121615224 -121049129 - MIR3 SINE MIR -31 177 82 191 253 270 28 chr1 121615939 121616117 -121048236 - MIR SINE MIR -11 251 31 415 333 47 7 chr1 121617285 121617435 -121046918 - MIR3 SINE MIR -41 167 12 186 258 0 0 chr1 121617464 121617526 -121046827 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 863 212 0 7 chr1 121617544 121617957 -121046396 + (TCCA)n Simple_repeat Simple_repeat 1 410 0 283 179 0 0 chr1 121617962 121618018 -121046335 + L1MB5 LINE L1 6118 6173 -1 324 0 0 0 chr1 121619442 121619478 -121044875 + (TG)n Simple_repeat Simple_repeat 1 36 0 592 223 40 15 chr1 121619510 121619712 -121044641 - L1MEc LINE L1 -3046 3083 2877 407 317 91 28 chr1 121619723 121620360 -121043993 - L1MEc LINE L1 -3873 2437 1761 458 289 79 26 chr1 121620462 121620652 -121043701 - L1MEc LINE L1 -4734 1576 1377 555 261 70 69 chr1 121620652 121620875 -121043478 - L1ME3A LINE L1 -13 6151 5929 1091 291 119 47 chr1 121620981 121621055 -121043298 - L1MEc LINE L1 -4887 1232 1165 2495 91 0 0 chr1 121621055 121621362 -121042991 - AluSc SINE Alu -2 307 1 1091 291 119 47 chr1 121621362 121622040 -121042313 - L1MEc LINE L1 -4954 1165 425 2252 158 37 5 chr1 121622092 121622496 -121041857 - L1MC3 LINE L1 -8 7777 7361 328 292 93 63 chr1 121622524 121622890 -121041463 - L1MEc LINE L1 -5731 388 12 916 310 108 32 chr1 121623096 121623725 -121040628 - L2 LINE L2 -400 2914 2238 190 346 37 0 chr1 121623994 121624075 -121040278 + L2 LINE L2 2849 2932 -382 345 321 155 12 chr1 121624854 121625022 -121039331 - L2 LINE L2 -4 3268 3077 409 288 163 6 chr1 121625252 121625412 -121038941 + MIR SINE MIR 23 207 -55 861 263 74 57 chr1 121626107 121626526 -121037827 + LTR16B LTR ERVL 1 426 -38 276 277 0 75 chr1 121628353 121628447 -121035906 - L2 LINE L2 0 3272 3186 606 287 45 20 chr1 121629718 121629778 -121034575 - MIR SINE MIR -10 252 195 1975 151 18 30 chr1 121629778 121630115 -121034238 + MER1B DNA MER1_type 1 333 -4 606 287 45 20 chr1 121630115 121630298 -121034055 - MIR SINE MIR -67 195 3 22 56 0 0 chr1 121630683 121630719 -121033634 + AT_rich Low_complexity Low_complexity 1 36 0 402 57 0 0 chr1 121631663 121631716 -121032637 + (GA)n Simple_repeat Simple_repeat 2 54 0 761 125 128 0 chr1 121631840 121631963 -121032390 + FAM SINE Alu 1 125 -60 214 293 93 21 chr1 121632378 121632518 -121031835 + MIR SINE MIR 111 260 -2 221 250 0 0 chr1 121632992 121633036 -121031317 - L2 LINE L2 -16 3256 3213 416 270 149 14 chr1 121633878 121634026 -121030327 + MIR SINE MIR 85 252 -10 1176 223 18 0 chr1 121634142 121634362 -121029991 - MER58A DNA MER1_type 0 224 1 711 269 114 53 chr1 121634633 121634993 -121029360 - Charlie8 DNA MER1_type -2003 414 33 1266 108 124 0 chr1 121635130 121635324 -121029029 - MER20 DNA MER1_type -1 218 1 309 322 47 20 chr1 121636566 121636715 -121027638 - MIR3 SINE MIR -55 153 1 254 293 130 0 chr1 121637287 121637410 -121026943 + L3 LINE CR1 1421 1559 -18 237 273 23 34 chr1 121637499 121637587 -121026766 + L3 LINE CR1 1488 1574 -3 4441 237 126 26 chr1 121638346 121639784 -121024569 - L1MC4 LINE L1 -2 8040 6459 261 296 9 37 chr1 121640107 121640215 -121024138 - MIR SINE MIR -117 145 41 1027 145 81 0 chr1 121640233 121640405 -121023948 - L1PA16 LINE L1 -10 6156 5971 1558 239 98 38 chr1 121640551 121641020 -121023333 + MLT1E LTR MaLR 97 593 0 376 222 14 0 chr1 121641263 121641335 -121023018 + MIR SINE MIR 3 75 -187 682 276 49 50 chr1 121641343 121641803 -121022550 - MLT1H1 LTR MaLR 0 555 10 501 214 61 0 chr1 121641826 121641957 -121022396 + MIR SINE MIR 124 262 0 322 250 28 111 chr1 121641978 121642077 -121022276 + L2 LINE L2 3139 3224 -48 418 190 0 13 chr1 121642077 121642156 -121022197 + MER116 DNA Mariner 1 78 -2 322 250 28 111 chr1 121642156 121642200 -121022153 + L2 LINE L2 3224 3270 -2 772 256 219 18 chr1 121642253 121642921 -121021432 + L2 LINE L2 2247 3056 -257 232 281 0 0 chr1 121642985 121643049 -121021304 + L2 LINE L2 3250 3313 0 23 0 0 0 chr1 121643786 121643809 -121020544 + AT_rich Low_complexity Low_complexity 1 23 0 2069 190 63 5 chr1 121643900 121644295 -121020058 + MSTB LTR MaLR 9 426 0 2045 203 32 78 chr1 121644835 121645371 -121018982 - MLT2B1 LTR ERVL -1 519 9 300 314 26 0 chr1 121645371 121645527 -121018826 + (TA)n Simple_repeat Simple_repeat 2 161 0 1475 257 92 30 chr1 121645912 121646659 -121017694 - L2 LINE L2 -2 3311 2539 501 149 0 0 chr1 121646691 121646765 -121017588 + MER63 DNA MER1_type 44 743 -93 225 245 0 0 chr1 121646773 121646822 -121017531 + MER63 DNA MER1_type 979 1027 -35 1034 232 81 7 chr1 121646837 121647121 -121017232 - L2 LINE L2 -758 2556 2252 836 269 51 38 chr1 121647301 121647511 -121016842 + L1M4 LINE L1 3563 3769 -2377 5366 185 65 3 chr1 121647511 121648529 -121015824 + Tigger6a DNA MER2_type 3 1083 0 836 269 51 38 chr1 121648529 121648771 -121015582 + L1M4 LINE L1 3769 4021 -2125 2569 123 22 12 chr1 121648889 121649289 -121015064 + L1MA3 LINE L1 5897 6300 -5 241 312 22 14 chr1 121649357 121649495 -121014858 + L1M4 LINE L1 2378 2516 -3630 41119 70 7 6 chr1 121649654 121655773 -121008580 + L1PA5 LINE L1 3 6125 -29 469 289 103 22 chr1 121655824 121656136 -121008217 + L1M4 LINE L1 2533 2869 -3277 * 849 208 45 98 chr1 121656123 121656649 -121007704 + L1MC5 LINE L1 7308 7911 -50 324 218 61 88 chr1 121656727 121656874 -121007479 + LTR50 LTR ERVL 1 143 -652 225 0 0 0 chr1 121657219 121657244 -121007109 + (A)n Simple_repeat Simple_repeat 1 25 0 517 148 0 0 chr1 121657246 121657327 -121007026 + LTR33A LTR ERVL 441 521 -2 323 277 100 55 chr1 121658110 121658399 -121005954 + ERVL LTR ERVL 957 1258 -4506 4948 145 10 47 chr1 121658460 121659418 -121004935 + L1MA4 LINE L1 4083 5005 -1141 * 42662 40 23 2 chr1 121659417 121665444 -120998909 + L1PA2 LINE L1 1 6155 0 4478 146 28 36 chr1 121665449 121666057 -120998296 + L1MA4 LINE L1 4991 5591 -709 675 184 7 29 chr1 121666057 121666193 -120998160 + FLAM_C SINE Alu 1 133 0 4478 146 28 36 chr1 121666193 121666621 -120997732 + L1MA4 LINE L1 5591 6021 -279 250 277 32 32 chr1 121667012 121667106 -120997247 + LTR67 LTR ERVL 425 518 -39 22 0 0 0 chr1 121667837 121667859 -120996494 + AT_rich Low_complexity Low_complexity 1 22 0 1958 176 45 3 chr1 121668264 121668454 -120995899 + L1MCa LINE L1 1737 1918 -4508 1795 158 0 0 chr1 121668454 121668727 -120995626 - AluSx SINE Alu -3 309 37 1958 176 45 3 chr1 121668727 121669226 -120995127 + L1MCa LINE L1 1918 2488 -3938 1089 116 5 58 chr1 121669224 121669413 -120994940 - L1 LINE L1 -1779 4367 4189 * 277 263 25 0 chr1 121669422 121669502 -120994851 + L1 LINE L1 4416 4497 -1649 188 271 102 0 chr1 121670222 121670281 -120994072 - MIR SINE MIR -87 175 111 372 323 110 0 chr1 121670784 121670948 -120993405 + MIR SINE MIR 55 236 -26 423 52 0 0 chr1 121671157 121671215 -120993138 + (TG)n Simple_repeat Simple_repeat 2 59 0 1038 180 24 15 chr1 121671216 121671422 -120992931 - MER31A LTR ERV1 -2 483 276 22 56 0 0 chr1 121721747 121721783 -120942570 + AT_rich Low_complexity Low_complexity 1 36 0 551 270 143 24 chr1 121721783 121722035 -120942318 - L2 LINE L2 -79 3234 2953 585 147 6 21 chr1 121722042 121722197 -120942156 - MER53 DNA DNA -1 188 2 652 273 112 0 chr1 121722204 121722409 -120941944 - L2 LINE L2 -357 2957 2730 281 336 123 20 chr1 121723363 121723509 -120940844 + L3 LINE CR1 556 716 -861 400 240 39 10 chr1 121723543 121723647 -120940706 + MIR SINE MIR 81 187 -75 200 286 0 0 chr1 121723700 121723749 -120940604 + MIR SINE MIR 110 158 -104 359 325 146 19 chr1 121723815 121724027 -120940326 + L3 LINE CR1 766 1004 -573 * 728 259 72 5 chr1 121724018 121724211 -120940142 - MIR SINE MIR 0 262 57 25 0 0 0 chr1 121724695 121724720 -120939633 + AT_rich Low_complexity Low_complexity 1 25 0 442 228 237 36 chr1 121724841 121725065 -120939288 + L1ME4a LINE L1 5835 6103 -18 741 267 36 45 chr1 121725749 121725920 -120938433 - MIR SINE MIR 0 262 92 1773 240 112 22 chr1 121725920 121726466 -120937887 - MLT1G1 LTR MaLR 0 595 1 741 267 36 45 chr1 121726466 121726541 -120937812 - MIR SINE MIR -170 92 18 588 266 123 28 chr1 121726606 121726858 -120937495 + L3 LINE CR1 1089 1364 -213 347 300 32 16 chr1 121727914 121728072 -120936281 + MIR SINE MIR 16 176 -63 381 298 107 24 chr1 121728138 121728352 -120936001 + L1MC/D LINE L1 5482 5718 -558 2005 81 23 52 chr1 121728442 121728749 -120935604 + AluSg SINE Alu 1 298 -12 817 209 6 0 chr1 121728761 121728919 -120935434 + AluSq SINE Alu 2 160 -153 216 130 0 0 chr1 121728975 121729021 -120935332 + (G)n Simple_repeat Simple_repeat 1 46 0 24 53 0 0 chr1 121729087 121729125 -120935228 + GC_rich Low_complexity Low_complexity 1 38 0 185 156 62 0 chr1 121729849 121729881 -120934472 - L2 LINE L2 -15 3298 3265 209 400 40 13 chr1 121729969 121730044 -120934309 + MIR3 SINE MIR 3 79 -129 1686 189 70 51 chr1 121730058 121730130 -120934223 - MLT1C LTR MaLR -41 426 357 2355 78 0 3 chr1 121730130 121730438 -120933915 + AluSq SINE Alu 1 307 -6 1686 189 70 51 chr1 121730438 121730777 -120933576 - MLT1C LTR MaLR -110 357 7 580 317 101 13 chr1 121730915 121731142 -120933211 - MIR SINE MIR -11 251 5 1860 118 14 4 chr1 121731269 121731586 -120932767 - AluSx SINE Alu 0 320 1 198 198 58 93 chr1 121731688 121731774 -120932579 + MIR SINE MIR 123 205 -57 2231 74 19 45 chr1 121732516 121732827 -120931526 - AluSx SINE Alu -9 303 1 373 250 48 10 chr1 121732951 121733055 -120931298 - MIR SINE MIR -73 189 82 314 185 54 115 chr1 121733117 121733247 -120931106 - MIR SINE MIR -64 198 77 787 183 0 0 chr1 121733750 121733876 -120930477 + FLAM_A SINE Alu 1 126 -7 47 33 0 0 chr1 121734025 121734086 -120930267 + AT_rich Low_complexity Low_complexity 1 61 0 214 239 15 45 chr1 121734252 121734319 -120930034 + CT-rich Low_complexity Low_complexity 1 65 0 216 0 0 0 chr1 121735168 121735192 -120929161 + (A)n Simple_repeat Simple_repeat 1 24 0 1248 146 0 0 chr1 121735200 121735378 -120928975 + FRAM SINE Alu 1 173 -3 1998 133 0 57 chr1 121735426 121735757 -120928596 - AluSx SINE Alu 0 312 1 240 160 0 20 chr1 121735790 121735840 -120928513 + L2 LINE L2 3264 3312 -1 499 222 26 0 chr1 121736879 121736996 -120927357 - MER94 DNA DNA -1 133 14 572 275 131 9 chr1 121737010 121737232 -120927121 - MIR SINE MIR -13 249 1 604 318 84 45 chr1 121737256 121738048 -120926305 - L2 LINE L2 -1 3271 2459 376 246 30 15 chr1 121738062 121738196 -120926157 - L2 LINE L2 -1029 2285 2150 1666 143 45 70 chr1 121738204 121738344 -120926009 + AluJo SINE Alu 1 143 -169 2221 112 3 20 chr1 121738344 121738649 -120925704 + AluSp SINE Alu 1 300 -13 1666 143 45 70 chr1 121738649 121738822 -120925531 + AluJo SINE Alu 143 306 -6 2358 84 9 31 chr1 121738909 121739229 -120925124 + AluSp SINE Alu 1 313 0 317 111 0 19 chr1 121739586 121739640 -120924713 - L1MB1 LINE L1 -18 6171 6119 678 164 0 0 chr1 121739787 121739903 -120924450 + FLAM_A SINE Alu 25 140 -2 5091 153 24 2 chr1 121739905 121740756 -120923597 + L1MB7 LINE L1 5300 6168 -16 2974 204 58 76 chr1 121741878 121743255 -120921098 + L1ME1 LINE L1 4810 6161 -5 180 179 0 0 chr1 121743258 121743297 -120921056 + GA-rich Low_complexity Low_complexity 2 40 0 1645 97 0 9 chr1 121743327 121743543 -120920810 + AluSq SINE Alu 1 214 -99 2569 53 0 0 chr1 121743580 121743880 -120920473 + AluY SINE Alu 1 300 -11 560 151 2 2 chr1 121744019 121744112 -120920241 - L1MB1 LINE L1 -204 5966 5874 324 71 0 0 chr1 121744112 121744154 -120920199 - MER31B LTR ERV1 -424 42 1 357 341 48 30 chr1 121744256 121744526 -120919827 - L2 LINE L2 -565 2749 2475 438 281 25 0 chr1 121744545 121744666 -120919687 - MIR SINE MIR -67 195 72 2512 188 12 0 chr1 121745070 121745491 -120918862 + MSTB LTR MaLR 1 426 0 234 206 235 0 chr1 121745492 121745560 -120918793 + L2 LINE L2 3185 3268 -4 2206 94 16 19 chr1 121745651 121745960 -120918393 + AluSg SINE Alu 1 308 -2 238 270 16 0 chr1 121746194 121746257 -120918096 + MER52A LTR ERV1 1 64 -1691 480 218 197 0 chr1 121746767 121746914 -120917439 + MIR SINE MIR 84 259 -3 663 265 38 16 chr1 121748955 121749195 -120915158 - MIR SINE MIR -4 258 17 428 326 20 0 chr1 121749594 121749741 -120914612 - MIR SINE MIR -78 184 35 203 296 0 0 chr1 121750272 121750343 -120914010 + GA-rich Low_complexity Low_complexity 2 72 0 460 48 16 0 chr1 121752998 121753060 -120911293 + AluS SINE Alu 2 64 -249 1135 244 61 36 chr1 121753670 121754030 -120910323 + MLT1J2 LTR MaLR 75 443 -7 1853 159 10 24 chr1 121754106 121754269 -120910084 - AluJo SINE Alu -16 296 137 1588 185 63 0 chr1 121754269 121754555 -120909798 - AluJb SINE Alu -8 304 1 1853 159 10 24 chr1 121754555 121754686 -120909667 - AluJo SINE Alu -175 137 6 715 257 91 5 chr1 121755355 121755565 -120908788 - MIR SINE MIR -14 248 21 201 288 25 12 chr1 121755784 121755864 -120908489 + GA-rich Low_complexity Low_complexity 4 84 0 205 232 29 0 chr1 121757492 121757561 -120906792 + (TA)n Simple_repeat Simple_repeat 1 71 0 1215 200 5 5 chr1 121758300 121758515 -120905838 - MER58A DNA MER1_type 0 224 10 213 191 24 0 chr1 121758515 121758557 -120905796 + L2 LINE L2 3149 3191 -81 908 192 91 0 chr1 121758569 121758767 -120905586 + MIR SINE MIR 3 218 -44 247 250 0 0 chr1 121758818 121758874 -120905479 + L2 LINE L2 3245 3300 -13 308 308 0 0 chr1 121760284 121760362 -120903991 + MER96 DNA MER1_type? 95 172 -3 6275 135 60 6 chr1 121761140 121762232 -120902121 + L1MC1 LINE L1 5186 6333 0 1804 149 27 30 chr1 121762239 121762568 -120901785 + AluJb SINE Alu 1 312 0 299 247 35 24 chr1 121762827 121762912 -120901441 - MIR SINE MIR -21 241 156 355 125 18 0 chr1 121763109 121763165 -120901188 - MER5A DNA MER1_type -5 184 128 1160 271 68 7 chr1 121763950 121764470 -120899883 + MER115 DNA AcHobo 15 618 -75 237 205 48 12 chr1 121765242 121765325 -120899028 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 430 351 66 0 chr1 121765405 121765556 -120898797 - MIR SINE MIR -64 198 38 252 143 0 0 chr1 121765604 121765646 -120898707 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 277 333 0 9 chr1 121765996 121766101 -120898252 + CT-rich Low_complexity Low_complexity 1 104 0 222 196 20 20 chr1 121767852 121767903 -120896450 - MER5A DNA MER1_type -99 90 40 191 333 0 0 chr1 121767855 121767909 -120896444 + MER5A DNA MER1_type 114 167 -22 * 260 280 123 55 chr1 121767973 121768209 -120896144 + MIR SINE MIR 11 262 0 182 177 371 0 chr1 121769345 121769407 -120894946 - L2 LINE L2 -19 3253 3169 552 186 0 0 chr1 121770014 121770116 -120894237 + U13 snRNA snRNA 1 102 -2 588 142 170 0 chr1 121770673 121770779 -120893574 + AluJb SINE Alu 1 124 -188 1158 185 34 0 chr1 121770809 121771014 -120893339 + AluJo SINE Alu 88 299 -13 865 224 42 25 chr1 121771016 121771257 -120893096 + L1M4 LINE L1 4016 4260 -1886 216 0 0 0 chr1 121771257 121771281 -120893072 + (A)n Simple_repeat Simple_repeat 1 24 0 441 54 0 0 chr1 121771281 121771337 -120893016 + (TA)n Simple_repeat Simple_repeat 2 57 0 2046 142 10 0 chr1 121771343 121771632 -120892721 + AluJb SINE Alu 2 293 -19 27 0 0 0 chr1 121771632 121771659 -120892694 + AT_rich Low_complexity Low_complexity 1 27 0 1741 171 3 22 chr1 121771668 121771983 -120892370 + AluJb SINE Alu 4 312 0 311 182 49 70 chr1 121771997 121772131 -120892222 + L1M4 LINE L1 4266 4398 -1748 2387 117 34 26 chr1 121772131 121772381 -120891972 + L1PB4 LINE L1 5768 6024 -132 1983 142 57 35 chr1 121772381 121772748 -120891605 - THE1C LTR MaLR 0 375 1 2387 117 34 26 chr1 121772748 121772882 -120891471 + L1PB4 LINE L1 6024 6155 -1 2587 249 120 11 chr1 121772884 121773694 -120890659 + L1MEc LINE L1 23 920 -5476 479 130 10 30 chr1 121773796 121773896 -120890457 - L1M LINE L1 -909 5391 5294 * 8244 125 12 33 chr1 121773874 121773928 -120890425 - L1 LINE L1 -1185 4961 4907 1608 171 39 32 chr1 121773928 121774238 -120890115 - AluJb SINE Alu 0 312 1 8244 125 12 33 chr1 121774238 121775383 -120888970 - L1 LINE L1 -1239 4907 3794 2198 67 3 20 chr1 121775383 121775681 -120888672 - AluY SINE Alu -18 293 1 8244 125 12 33 chr1 121775681 121775903 -120888450 - L1 LINE L1 -2352 3794 3569 371 182 68 23 chr1 121775905 121775993 -120888360 + L1ME1 LINE L1 6020 6111 -55 249 143 71 57 chr1 121776040 121776110 -120888243 + L1MB8 LINE L1 6111 6183 -1 21 0 0 0 chr1 121776118 121776139 -120888214 + AT_rich Low_complexity Low_complexity 1 21 0 540 321 106 3 chr1 121776143 121776436 -120887917 + L2 LINE L2 2034 2356 -958 1340 125 177 14 chr1 121776600 121776899 -120887454 - Tigger2 DNA MER2_type -92 2626 1 1592 193 87 0 chr1 121776901 121777223 -120887130 + MLT1F LTR MaLR 193 542 0 21 0 0 0 chr1 121777785 121777806 -120886547 + AT_rich Low_complexity Low_complexity 1 21 0 192 152 0 0 chr1 121777924 121777957 -120886396 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 279 0 0 0 chr1 121778010 121778041 -120886312 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1167 202 72 54 chr1 121778043 121778320 -120886033 - AluJo SINE Alu -30 282 1 1225 286 85 41 chr1 121778685 121779384 -120884969 + L1MEd LINE L1 569 1352 -4958 4084 48 6 0 chr1 121779384 121779879 -120884474 + L1PA7 LINE L1 5655 6152 -2 1225 286 85 41 chr1 121779879 121780273 -120884080 + L1MEd LINE L1 1352 1727 -4583 27 49 0 0 chr1 121780284 121780325 -120884028 + AT_rich Low_complexity Low_complexity 1 41 0 2308 100 3 3 chr1 121780509 121780809 -120883544 + AluSc SINE Alu 1 300 -9 2192 88 3 50 chr1 121781076 121781395 -120882958 - AluSp SINE Alu -9 304 1 413 266 124 11 chr1 121781975 121782152 -120882201 + MIR SINE MIR 1 197 -65 233 278 98 53 chr1 121782653 121782786 -120881567 + L2 LINE L2 3125 3263 -9 2279 105 3 0 chr1 121783737 121784032 -120880321 - AluSp SINE Alu -17 296 1 197 94 62 0 chr1 121784268 121784300 -120880053 + L3 LINE CR1 1294 1327 -250 450 306 22 96 chr1 121785086 121785178 -120879175 - MIR SINE MIR 0 262 165 2127 135 0 13 chr1 121785178 121785353 -120879000 - AluSx SINE Alu -5 307 136 2351 86 10 0 chr1 121785353 121785655 -120878698 - AluSp SINE Alu -7 306 2 2127 135 0 13 chr1 121785655 121785790 -120878563 - AluSx SINE Alu -176 136 1 450 306 22 96 chr1 121785790 121785968 -120878385 - MIR SINE MIR -97 165 12 2247 108 0 0 chr1 121786086 121786382 -120877971 - AluSq SINE Alu -17 296 1 2228 130 0 3 chr1 121786826 121787134 -120877219 - AluSg SINE Alu -3 307 1 1094 128 0 39 chr1 121787325 121787505 -120876848 - FRAM SINE Alu -3 173 1 256 333 81 24 chr1 121787695 121787818 -120876535 - L2 LINE L2 -9 3263 3134 23 33 0 0 chr1 121790930 121790960 -120873393 + AT_rich Low_complexity Low_complexity 1 30 0 302 299 122 0 chr1 121791271 121791378 -120872975 - MIR SINE MIR -109 153 34 2473 93 3 0 chr1 121792042 121792384 -120871969 - AluSx SINE Alu 0 343 1 342 245 102 0 chr1 121792886 121792984 -120871369 + L2 LINE L2 3159 3266 -6 323 150 0 33 chr1 121793128 121793188 -120871165 + AluS SINE Alu 7 64 -239 195 255 0 21 chr1 121793845 121793892 -120870461 - L2 LINE L2 -8 3264 3219 356 68 51 0 chr1 121794132 121794191 -120870162 + Alu SINE Alu 236 297 -5 1392 216 103 3 chr1 121794336 121794687 -120869666 - MLT1B LTR MaLR -4 386 1 766 149 91 17 chr1 121794687 121794862 -120869491 + Charlie1 DNA MER1_type 2573 2760 -1 232 339 69 55 chr1 121794885 121795016 -120869337 - L2 LINE L2 -639 2675 2547 2216 117 3 0 chr1 121795016 121795315 -120869038 + AluSq SINE Alu 1 300 -13 232 339 69 55 chr1 121795315 121795678 -120868675 - L2 LINE L2 -767 2547 2174 1900 168 10 3 chr1 121795719 121796016 -120868337 - AluJo SINE Alu -13 299 1 198 226 170 0 chr1 121796514 121796567 -120867786 + L2 LINE L2 3008 3069 -244 896 139 0 0 chr1 121796744 121796866 -120867487 + FLAM_C SINE Alu 3 124 -19 2170 116 17 0 chr1 121796947 121797239 -120867114 + AluSx SINE Alu 1 297 -15 2151 118 7 3 chr1 121797240 121797537 -120866816 + AluSc SINE Alu 2 299 -10 989 246 115 70 chr1 121797673 121798106 -120866247 + MLT1J LTR MaLR 3 462 -49 1930 164 55 3 chr1 121798106 121798453 -120865900 - MLT1A1 LTR MaLR 0 365 1 989 246 115 70 chr1 121798453 121798506 -120865847 + MLT1J LTR MaLR 462 511 0 437 267 67 27 chr1 121799042 121799192 -120865161 + MIR SINE MIR 1 156 -106 1836 133 0 89 chr1 121799355 121799692 -120864661 + AluJo SINE Alu 1 307 -5 330 194 29 78 chr1 121799787 121799890 -120864463 - AluJb SINE Alu 0 302 205 390 277 39 31 chr1 121800004 121800134 -120864219 + MIR SINE MIR 26 156 -106 1852 131 0 89 chr1 121800296 121800633 -120863720 + AluJo SINE Alu 1 307 -5 1779 175 10 16 chr1 121800728 121801036 -120863317 - AluJb SINE Alu -6 306 1 1894 180 0 3 chr1 121801474 121801774 -120862579 + AluJb SINE Alu 1 299 -13 516 273 204 18 chr1 121801912 121802132 -120862221 - MIR SINE MIR 0 262 2 1515 201 7 10 chr1 121802360 121802668 -120861685 - AluJo SINE Alu -5 307 1 523 287 30 60 chr1 121802690 121802857 -120861496 - MIR SINE MIR -39 169 8 715 174 17 0 chr1 121802904 121803019 -120861334 - FLAM_C SINE Alu -15 118 2 745 204 0 15 chr1 121803303 121803440 -120860913 + AluJo SINE Alu 1 135 -177 40 0 0 0 chr1 121803561 121803601 -120860752 + AT_rich Low_complexity Low_complexity 1 40 0 1588 178 59 3 chr1 121803636 121803922 -120860431 - AluJb SINE Alu -10 302 1 408 298 70 13 chr1 121803953 121804111 -120860242 - MIR SINE MIR 0 262 96 916 192 6 0 chr1 121804167 121804323 -120860030 + FAM SINE Alu 1 157 -18 1919 151 11 0 chr1 121804391 121804675 -120859678 - AluSx SINE Alu -25 287 1 296 259 88 124 chr1 121804698 121804891 -120859462 + MER102a DNA MER1_type 140 325 -5 236 318 0 0 chr1 121804926 121805014 -120859339 + MER103 DNA DNA 79 166 0 25 0 0 0 chr1 121805057 121805082 -120859271 + AT_rich Low_complexity Low_complexity 1 25 0 2306 93 3 0 chr1 121805100 121805400 -120858953 + AluSx SINE Alu 1 301 -11 275 341 0 0 chr1 121806126 121806208 -120858145 + L2 LINE L2 3227 3308 -5 1184 129 16 32 chr1 121806482 121806668 -120857685 - AluJo SINE Alu -10 302 120 413 65 0 0 chr1 121806668 121806730 -120857623 - MER41B LTR ERV1 -88 547 486 751 168 0 84 chr1 121806730 121806766 -120857587 - AluJo SINE Alu -164 148 111 2212 107 10 0 chr1 121806766 121807057 -120857296 + AluSq SINE Alu 1 294 -19 751 168 0 84 chr1 121807057 121807175 -120857178 - AluJo SINE Alu -201 111 7 191 286 20 0 chr1 121807686 121807735 -120856618 - L2 LINE L2 -33 3280 3231 306 0 0 0 chr1 121807942 121807976 -120856377 + (TG)n Simple_repeat Simple_repeat 2 35 0 342 0 0 0 chr1 121807992 121808030 -120856323 + (TA)n Simple_repeat Simple_repeat 2 39 0 1931 142 0 20 chr1 121808030 121808332 -120856021 - AluSx SINE Alu -16 296 1 1220 162 0 60 chr1 121808550 121808785 -120855568 - AluJo SINE Alu -91 221 1 408 197 0 0 chr1 121809660 121809726 -120854627 - FRAM SINE Alu -37 139 74 249 337 14 149 chr1 121809770 121810126 -120854227 + L2 LINE L2 2927 3234 -38 2224 106 3 0 chr1 121810167 121810460 -120853893 + AluSx SINE Alu 1 294 -18 723 243 115 4 chr1 121810511 121810746 -120853607 - MIR SINE MIR 0 262 2 731 195 120 107 chr1 121811151 121811385 -120852968 - Charlie2 DNA MER1_type -2 2860 2630 1506 194 35 14 chr1 121811385 121811669 -120852684 + AluJo SINE Alu 1 290 -22 731 195 120 107 chr1 121811669 121811708 -120852645 - Charlie2 DNA MER1_type -232 2630 2593 2379 93 6 3 chr1 121811708 121812020 -120852333 - AluSp SINE Alu 0 313 1 731 195 120 107 chr1 121812020 121812221 -120852132 - Charlie2 DNA MER1_type -269 2593 2379 * 825 198 15 5 chr1 121812218 121812415 -120851938 - Charlie2a DNA MER1_type -1195 1667 1469 1267 230 114 73 chr1 121812481 121813112 -120851241 - Charlie2b DNA MER1_type -2111 671 15 623 223 150 34 chr1 121813382 121813615 -120850738 + MER102b DNA MER1_type 82 341 0 288 256 131 34 chr1 121814183 121814359 -120849994 + L1ME LINE L1 5591 5783 -338 2502 66 0 3 chr1 121815872 121816173 -120848180 + AluY SINE Alu 1 300 -11 5141 220 61 48 chr1 121816608 121817714 -120846639 + L1MB7 LINE L1 10 1143 -5399 856 174 0 0 chr1 121817714 121817846 -120846507 + FLAM_C SINE Alu 1 132 -1 5141 220 61 48 chr1 121817846 121818304 -120846049 + L1MB7 LINE L1 1143 1594 -4948 877 195 36 0 chr1 121818310 121818505 -120845848 + L1MB7 LINE L1 4248 4449 -2195 4686 220 45 14 chr1 121818514 121819480 -120844873 + L1MB7 LINE L1 4339 5358 -1286 2279 102 3 7 chr1 121819480 121819783 -120844570 - AluSq SINE Alu -11 302 1 4686 220 45 14 chr1 121819783 121820123 -120844230 + L1MB7 LINE L1 5358 5686 -958 960 172 14 50 chr1 121820123 121820344 -120844009 + L1MB7 LINE L1 6451 6663 -19 1835 155 0 44 chr1 121820638 121820955 -120843398 - AluJo SINE Alu -7 305 3 1400 150 37 52 chr1 121821220 121821355 -120842998 - MER33 DNA MER1_type -2262 323 187 2305 56 42 11 chr1 121821355 121821642 -120842711 - AluYa5 SINE Alu -15 296 1 1400 150 37 52 chr1 121821642 121821832 -120842521 - MER33 DNA MER1_type -2398 187 3 2239 110 0 0 chr1 121822316 121822607 -120841746 + AluSq SINE Alu 3 293 -20 24 32 0 0 chr1 121822721 121822752 -120841601 + AT_rich Low_complexity Low_complexity 1 31 0 2069 129 0 32 chr1 121825393 121825703 -120838650 + AluJb SINE Alu 1 300 -12 300 331 0 65 chr1 121825960 121826099 -120838254 - MIR SINE MIR -73 189 60 2237 93 0 13 chr1 121826157 121826458 -120837895 - AluY SINE Alu -13 298 2 1924 167 0 13 chr1 121826649 121826955 -120837398 + AluJb SINE Alu 1 302 -10 29 47 0 0 chr1 121827481 121827524 -120836829 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr1 121827578 121827607 -120836746 + AT_rich Low_complexity Low_complexity 1 29 0 2343 87 10 16 chr1 121827687 121827999 -120836354 - AluSg SINE Alu 0 310 1 265 391 43 0 chr1 121828087 121828225 -120836128 - MIR SINE MIR -114 148 5 2217 92 7 0 chr1 121828294 121828608 -120835745 - AluSp SINE Alu 0 316 1 459 296 172 0 chr1 121828905 121829091 -120835262 + MIR SINE MIR 9 226 -36 2229 120 3 7 chr1 121829546 121829855 -120834498 - AluSp SINE Alu -5 308 1 21 0 0 0 chr1 121829858 121829879 -120834474 + AT_rich Low_complexity Low_complexity 1 21 0 1802 180 3 10 chr1 121830710 121831004 -120833349 + AluJb SINE Alu 1 292 -20 2938 175 21 4 chr1 121831306 121831838 -120832515 + MER44D DNA MER2_type 1 596 -9 2181 99 7 10 chr1 121831852 121832145 -120832208 - AluSc SINE Alu -17 292 1 392 245 51 51 chr1 121832150 121832346 -120832007 - L1ME3A LINE L1 -5 6165 5970 2496 67 0 0 chr1 121832424 121832724 -120831629 - AluY SINE Alu -11 300 1 959 112 0 15 chr1 121832751 121832885 -120831468 + AluSg/x SINE Alu 165 296 -14 1266 116 0 11 chr1 121832887 121833068 -120831285 + AluSx SINE Alu 3 181 -131 372 231 19 19 chr1 121833266 121833374 -120830979 - Charlie1 DNA MER1_type -1 2760 2653 213 132 0 0 chr1 121833491 121833529 -120830824 + (A)n Simple_repeat Simple_repeat 1 38 0 795 184 0 14 chr1 121833532 121833679 -120830674 - AluJb SINE Alu -31 281 137 793 268 64 69 chr1 121833680 121834044 -120830309 - L1M4 LINE L1 -2499 3647 3283 2331 105 3 6 chr1 121834044 121834358 -120829995 - AluSp SINE Alu 0 313 1 793 268 64 69 chr1 121834358 121834713 -120829640 - L1M4 LINE L1 -2863 3283 2930 761 128 8 0 chr1 121834713 121834830 -120829523 - FLAM_C SINE Alu -15 118 1 793 268 64 69 chr1 121834830 121834879 -120829474 - L1M4 LINE L1 -3216 2930 2882 3857 97 12 0 chr1 121834969 121835537 -120828816 + Tigger1 DNA MER2_type 962 1536 -882 655 161 0 0 chr1 121835531 121835643 -120828710 + Tigger1 DNA MER2_type 2306 2417 -1 * 225 173 0 39 chr1 121835693 121835699 -120828654 + (TA)n Simple_repeat Simple_repeat 1 6 -44 2301 94 7 0 chr1 121835699 121835996 -120828357 + AluSp SINE Alu 1 299 -14 225 173 0 39 chr1 121835996 121836041 -120828312 + (TA)n Simple_repeat Simple_repeat 6 50 0 26 0 0 0 chr1 121836333 121836359 -120827994 + AT_rich Low_complexity Low_complexity 1 26 0 2219 109 0 0 chr1 121836375 121836669 -120827684 - AluSg1 SINE Alu -15 294 1 28 48 0 0 chr1 121836676 121836718 -120827635 + AT_rich Low_complexity Low_complexity 1 42 0 2054 112 39 0 chr1 121836837 121837123 -120827230 + AluSg SINE Alu 2 298 -12 2721 168 36 28 chr1 121838720 121839299 -120825054 + L1MB7 LINE L1 5600 6183 -1 2328 93 27 0 chr1 121839371 121839672 -120824681 - AluSc SINE Alu 0 309 1 228 319 133 26 chr1 121839716 121839829 -120824524 + L2 LINE L2 3115 3239 -33 29 47 0 0 chr1 121839973 121840016 -120824337 + AT_rich Low_complexity Low_complexity 1 43 0 2353 84 0 0 chr1 121840786 121841084 -120823269 - AluY SINE Alu -13 298 1 4565 136 18 32 chr1 121841212 121842052 -120822301 - L1MB3 LINE L1 -9 6174 5347 344 278 44 0 chr1 121842244 121842334 -120822019 + MER119 DNA MER1_type 1 94 -489 681 238 85 12 chr1 121842334 121842498 -120821855 + AluJb SINE Alu 124 299 -13 1833 185 15 25 chr1 121842500 121842900 -120821453 + MER119 DNA MER1_type 101 496 -87 690 190 17 0 chr1 121842989 121843105 -120821248 + FLAM_A SINE Alu 1 118 -15 243 0 0 0 chr1 121843107 121843134 -120821219 + (TG)n Simple_repeat Simple_repeat 2 28 0 828 164 0 20 chr1 121843401 121843547 -120820806 - FLAM_C SINE Alu 0 143 1 2341 78 3 0 chr1 121843664 121843968 -120820385 + AluSp SINE Alu 1 305 0 3158 138 72 9 chr1 121844044 121844600 -120819753 + MER6A DNA MER2_type 1 591 -14 1036 229 37 0 chr1 121844683 121844897 -120819456 - MER58A DNA MER1_type -2 222 1 2663 55 0 0 chr1 121844920 121845229 -120819124 + AluY SINE Alu 1 309 -2 4242 199 65 17 chr1 121846011 121846954 -120817399 + L1M4 LINE L1 3554 4450 -1696 1854 154 7 0 chr1 121846954 121847257 -120817096 - AluSx SINE Alu 0 305 1 4242 199 65 17 chr1 121847257 121847340 -120817013 + L1M4 LINE L1 4450 4528 -1618 252 0 0 0 chr1 121847340 121847368 -120816985 + (CA)n Simple_repeat Simple_repeat 1 28 0 4242 199 65 17 chr1 121847368 121847440 -120816913 + L1M4 LINE L1 4528 4707 -1439 184 305 0 49 chr1 121847518 121847600 -120816753 + L2 LINE L2 1757 1834 -1480 240 342 145 26 chr1 121847906 121847986 -120816367 + L2 LINE L2 3102 3171 -101 2155 126 0 13 chr1 121847986 121848295 -120816058 - AluSq SINE Alu -8 305 1 240 342 145 26 chr1 121848295 121848366 -120815987 + L2 LINE L2 3171 3271 -1 2239 99 26 3 chr1 121848504 121848806 -120815547 + AluSx SINE Alu 1 309 -3 2413 100 3 0 chr1 121848876 121849186 -120815167 + AluSx SINE Alu 1 311 -1 240 184 0 0 chr1 121849364 121849413 -120814940 + (TA)n Simple_repeat Simple_repeat 2 50 0 206 248 44 9 chr1 121849454 121849567 -120814786 + (TA)n Simple_repeat Simple_repeat 2 118 0 1823 178 26 0 chr1 121850021 121850324 -120814029 - AluJb SINE Alu -1 311 1 298 356 108 16 chr1 121850482 121850797 -120813556 - L2 LINE L2 -1077 2237 1894 254 264 81 23 chr1 121851603 121851690 -120812663 + MIR SINE MIR 121 212 -50 21 0 0 0 chr1 121852023 121852044 -120812309 + AT_rich Low_complexity Low_complexity 1 21 0 239 314 0 0 chr1 121852237 121852288 -120812065 - L2 LINE L2 -9 3263 3213 2262 128 0 0 chr1 121852475 121852779 -120811574 - AluSx SINE Alu -8 304 1 208 308 60 17 chr1 121852793 121852910 -120811443 + L2 LINE L2 2554 2675 -639 757 137 112 35 chr1 121852933 121853108 -120811245 - Charlie1 DNA MER1_type -1 2760 2567 1062 254 103 3 chr1 121853108 121853459 -120810894 + MLT1B LTR MaLR 1 386 -4 757 137 112 35 chr1 121853459 121853480 -120810873 - Charlie1 DNA MER1_type -194 2567 2549 578 156 0 0 chr1 121853482 121853578 -120810775 + MLT1B-int LTR MaLR 20 115 -1620 2646 210 46 133 chr1 121853593 121854387 -120809966 + MLT1B-int LTR MaLR 288 1150 -221 2325 100 3 0 chr1 121854387 121854688 -120809665 - AluSx SINE Alu -10 302 1 1986 131 0 10 chr1 121854690 121854987 -120809366 - AluSg SINE Alu -16 294 1 2270 108 0 3 chr1 121854988 121855293 -120809060 - AluSq SINE Alu -9 304 1 2646 210 46 133 chr1 121855293 121855304 -120809049 + MLT1B-int LTR MaLR 1151 1161 -210 837 110 0 89 chr1 121855304 121855450 -120808903 - FLAM_A SINE Alu 0 133 1 2646 210 46 133 chr1 121855450 121855770 -120808583 + MLT1B-int LTR MaLR 1161 1314 -57 2076 156 0 3 chr1 121855770 121856071 -120808282 - AluSx SINE Alu -12 300 1 2646 210 46 133 chr1 121856071 121856118 -120808235 + MLT1B-int LTR MaLR 1314 1364 -7 847 203 148 31 chr1 121856124 121856449 -120807904 + MLT1A2 LTR MaLR 1 363 -11 2778 186 212 23 chr1 121856498 121857082 -120807271 - Charlie1 DNA MER1_type -295 2466 1994 2344 71 10 10 chr1 121857082 121857391 -120806962 + AluY SINE Alu 1 309 -2 2778 186 212 23 chr1 121857391 121857674 -120806679 - Charlie1 DNA MER1_type -767 1994 1435 341 179 26 51 chr1 121857680 121857758 -120806595 - MER96 DNA MER1_type? -7 168 93 2240 138 0 0 chr1 121858200 121858505 -120805848 - AluSx SINE Alu -7 305 1 2195 88 3 3 chr1 121858536 121858821 -120805532 - AluSc SINE Alu -21 288 4 1998 126 3 14 chr1 121858993 121859287 -120805066 + AluSx SINE Alu 2 292 -20 1317 197 53 15 chr1 121859302 121859608 -120804745 - AluJo SINE Alu 0 324 9 27 29 0 0 chr1 121859887 121859921 -120804432 + AT_rich Low_complexity Low_complexity 1 34 0 2076 122 10 0 chr1 121860794 121861088 -120803265 - AluJb SINE Alu -14 298 2 2390 115 0 0 chr1 121862406 121862718 -120801635 - AluSx SINE Alu 0 312 1 468 263 147 32 chr1 121862810 121862966 -120801387 + MER5A DNA MER1_type 10 183 -6 536 263 96 8 chr1 121863042 121863282 -120801071 + MIR SINE MIR 2 262 0 1975 139 0 14 chr1 121863445 121863739 -120800614 + AluJb SINE Alu 1 290 -22 2307 97 0 10 chr1 121864793 121865091 -120799262 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr1 121865937 121865965 -120798388 + AT_rich Low_complexity Low_complexity 1 28 0 1794 152 31 7 chr1 121866469 121866758 -120797595 - AluJb SINE Alu -16 296 1 345 24 0 0 chr1 121866769 121866811 -120797542 + (TTC)n Simple_repeat Simple_repeat 2 43 0 1889 154 3 0 chr1 121866830 121867115 -120797238 - AluSx SINE Alu -26 286 1 187 313 47 16 chr1 121867796 121867860 -120796493 - MIR SINE MIR -124 138 73 1485 160 13 89 chr1 121868226 121868539 -120795814 + AluJo SINE Alu 1 289 -23 2297 84 10 0 chr1 121868592 121868889 -120795464 + AluSc SINE Alu 1 300 -9 22 70 0 0 chr1 121870727 121870770 -120793583 + AT_rich Low_complexity Low_complexity 1 43 0 2318 104 0 0 chr1 121871383 121871681 -120792672 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr1 121872325 121872346 -120792007 + (T)n Simple_repeat Simple_repeat 1 21 0 240 59 0 0 chr1 121872908 121872942 -120791411 + (CA)n Simple_repeat Simple_repeat 2 35 0 279 333 11 68 chr1 121873806 121873983 -120790370 + L2 LINE L2 2886 3052 -220 2414 53 3 7 chr1 121875340 121875640 -120788713 - AluY SINE Alu -12 299 1 582 265 139 6 chr1 121876041 121876207 -120788146 + MIR SINE MIR 25 212 -50 184 29 0 57 chr1 121878064 121878099 -120786254 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1827 184 3 0 chr1 121879768 121880077 -120784276 + AluJo SINE Alu 1 310 -2 395 261 75 22 chr1 121880088 121880222 -120784131 - MIR SINE MIR -114 148 8 192 158 0 0 chr1 121880748 121880786 -120783567 + A-rich Low_complexity Low_complexity 4 41 0 1641 180 16 16 chr1 121881921 121882227 -120782126 + AluJb SINE Alu 1 306 -6 388 281 91 0 chr1 121882227 121882348 -120782005 + MIR SINE MIR 24 155 -107 200 270 117 36 chr1 121882590 121882701 -120781652 - MIR3 SINE MIR -2 206 87 403 203 163 20 chr1 121882787 121882940 -120781413 + Charlie7 DNA MER1_type 2438 2612 0 1020 191 20 5 chr1 121883047 121883246 -120781107 - MER3 DNA MER1_type 0 209 8 221 273 71 61 chr1 121889073 121889172 -120775181 - L3b LINE CR1 -203 1380 1281 239 367 0 13 chr1 121889345 121889424 -120774929 - L2 LINE L2 -9 3263 3186 563 187 20 0 chr1 121889602 121889709 -120774644 + MER5A DNA MER1_type 4 112 -77 604 196 0 9 chr1 121889746 121889853 -120774500 + L2 LINE L2 3203 3308 -5 376 299 39 8 chr1 121890136 121890263 -120774090 + MIR SINE MIR 118 248 -14 207 0 0 0 chr1 121890834 121890857 -120773496 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 1285 249 115 26 chr1 121894695 121895121 -120769232 - L2 LINE L2 0 3313 2850 1569 171 34 3 chr1 121895800 121896098 -120768255 + AluJb SINE Alu 3 309 -3 221 191 24 0 chr1 121896664 121896706 -120767647 - L2 LINE L2 -16 3256 3214 222 272 19 19 chr1 121897757 121897853 -120766500 + GA-rich Low_complexity Low_complexity 1 96 0 226 316 6 29 chr1 121898149 121898323 -120766030 + CT-rich Low_complexity Low_complexity 2 171 0 * 301 216 5 84 chr1 121898207 121898457 -120765896 + (TCTCTG)n Simple_repeat Simple_repeat 1 230 0 220 291 47 23 chr1 121898471 121898643 -120765710 + (TCTCTG)n Simple_repeat Simple_repeat 3 178 0 400 292 78 52 chr1 121898677 121898831 -120765522 + MIR3 SINE MIR 21 178 -30 709 100 100 0 chr1 121900331 121900441 -120763912 - Charlie1b DNA MER1_type 0 523 403 4799 151 39 19 chr1 121900446 121901312 -120763041 + L1MC3 LINE L1 6891 7774 -11 1650 150 37 24 chr1 121901315 121901609 -120762744 - AluJo SINE Alu -14 298 1 1268 164 71 34 chr1 121901621 121901944 -120762409 - Charlie1b DNA MER1_type -108 415 81 1941 201 52 2 chr1 121902405 121902847 -120761506 - L1M4 LINE L1 -2104 4322 3859 2321 71 7 0 chr1 121902875 121903171 -120761182 - AluSg SINE Alu -12 298 1 7302 198 61 50 chr1 121903171 121903562 -120760791 + MLT1A1-int LTR MaLR 52 437 -1298 2053 93 66 0 chr1 121903562 121903851 -120760502 + AluSx SINE Alu 1 308 -4 2309 75 72 12 chr1 121903852 121904183 -120760170 + L1PA8 LINE L1 5820 6170 -2 7302 198 61 50 chr1 121904183 121905198 -120759155 + MLT1A1-int LTR MaLR 437 1483 -252 2283 90 7 0 chr1 121905198 121905508 -120758845 + AluSp SINE Alu 1 312 -1 7302 198 61 50 chr1 121905508 121905764 -120758589 + MLT1A1-int LTR MaLR 1483 1735 0 926 181 0 6 chr1 121905811 121905982 -120758371 + FRAM SINE Alu 1 163 -13 1426 186 22 78 chr1 121905993 121906354 -120757999 + MLT1A1 LTR MaLR 25 365 0 3914 133 69 25 chr1 121906363 121906491 -120757862 - L1MCa LINE L1 -3890 2536 2415 2224 71 0 42 chr1 121906491 121906802 -120757551 - AluY SINE Alu -13 298 1 3914 133 69 25 chr1 121906802 121907504 -120756849 - L1MCa LINE L1 -4011 2415 1574 996 180 5 21 chr1 121907525 121907714 -120756639 + AluJo SINE Alu 101 286 -26 7684 149 36 68 chr1 121907716 121907776 -120756577 - L1MCa LINE L1 -4837 1589 1529 2179 89 7 7 chr1 121907776 121908069 -120756284 - AluSx SINE Alu -19 293 1 7684 149 36 68 chr1 121908069 121908454 -120755899 - L1MCa LINE L1 -4897 1529 1133 1637 182 17 13 chr1 121908454 121908756 -120755597 - AluJo SINE Alu -9 303 1 7684 149 36 68 chr1 121908756 121909947 -120754406 - L1MCa LINE L1 -5293 1133 5 228 219 44 18 chr1 121909937 121910051 -120754302 - L1M4 LINE L1 -842 5304 5188 * 1605 174 14 31 chr1 121910200 121910493 -120753860 - AluJo SINE Alu -24 288 1 189 318 204 0 chr1 121910534 121910622 -120753731 + L2 LINE L2 2948 3053 -219 2130 94 3 0 chr1 121910676 121910963 -120753390 - AluSg SINE Alu -16 294 7 232 310 0 14 chr1 121911187 121911258 -120753095 - L2 LINE L2 -212 3060 2991 2389 57 0 0 chr1 121911308 121911607 -120752746 + AluY SINE Alu 1 299 -12 21 0 0 0 chr1 121912095 121912116 -120752237 + AT_rich Low_complexity Low_complexity 1 21 0 2075 108 0 16 chr1 121912513 121912820 -120751533 - AluSx SINE Alu -10 302 1 594 141 43 0 chr1 121913139 121913231 -120751122 + FLAM_C SINE Alu 29 124 -19 2241 87 0 10 chr1 121913243 121913543 -120750810 + AluY SINE Alu 1 297 -14 732 121 96 131 chr1 121913552 121913751 -120750602 - LTR24C LTR ERV1 -408 227 36 189 0 0 0 chr1 121913751 121913772 -120750581 + (TG)n Simple_repeat Simple_repeat 2 22 0 1765 164 0 13 chr1 121913772 121914082 -120750271 - AluSx SINE Alu -6 306 1 21 0 0 0 chr1 121914090 121914111 -120750242 + AT_rich Low_complexity Low_complexity 1 21 0 2130 123 0 3 chr1 121914134 121914443 -120749910 - AluSx SINE Alu -4 308 1 250 32 0 0 chr1 121914443 121914474 -120749879 - LTR24C LTR ERV1 -604 31 1 * 1509 112 86 19 chr1 121914474 121914741 -120749612 + MER47A DNA MER2_type 82 366 0 2461 213 83 13 chr1 121914764 121915627 -120748726 - L1ME1 LINE L1 -152 6014 5101 1593 177 16 16 chr1 121915628 121915933 -120748420 - AluJo SINE Alu -7 305 1 234 0 0 0 chr1 121915935 121915961 -120748392 + (TG)n Simple_repeat Simple_repeat 2 27 0 466 86 86 0 chr1 121915967 121916037 -120748316 - FLAM_A SINE Alu -37 105 30 525 213 49 18 chr1 121916042 121916206 -120748147 + L1M4 LINE L1 3749 3917 -2229 272 229 16 0 chr1 121916206 121916267 -120748086 - AluSg/x SINE Alu -128 174 113 2885 195 32 50 chr1 121916267 121916617 -120747736 - L1ME1 LINE L1 -1059 5087 4732 2070 119 0 0 chr1 121916617 121916911 -120747442 - AluSx SINE Alu -14 298 5 2885 195 32 50 chr1 121916911 121917334 -120747019 - L1ME1 LINE L1 -1414 4732 4328 761 120 192 0 chr1 121917338 121917463 -120746890 - FRAM SINE Alu -16 160 12 35 0 0 0 chr1 121917479 121917514 -120746839 + AT_rich Low_complexity Low_complexity 1 35 0 1260 147 136 32 chr1 121917517 121917768 -120746585 + AluJb SINE Alu 1 277 -35 393 300 0 0 chr1 121917793 121917883 -120746470 + L1MC4 LINE L1 6614 6703 -1339 77 22 0 0 chr1 121917902 121917993 -120746360 + AT_rich Low_complexity Low_complexity 1 91 0 734 215 0 0 chr1 121917993 121918114 -120746239 - FLAM_A SINE Alu -12 121 1 8179 155 36 118 chr1 121918114 121918853 -120745500 - L1M2 LINE L1 -758 5388 4590 489 34 0 0 chr1 121918853 121918912 -120745441 + (TG)n Simple_repeat Simple_repeat 2 60 0 811 97 8 40 chr1 121918914 121919038 -120745315 - FAM SINE Alu -42 143 24 8179 155 36 118 chr1 121919038 121919461 -120744892 - L1M2 LINE L1 -1557 4589 4133 1702 156 14 3 chr1 121919461 121919744 -120744609 + AluJo SINE Alu 1 286 -26 8179 155 36 118 chr1 121919744 121919769 -120744584 - L1M2 LINE L1 -2013 4133 4108 1371 197 3 43 chr1 121919769 121919932 -120744421 - AluJb SINE Alu -24 288 141 2051 108 10 7 chr1 121919932 121920229 -120744124 - AluSq SINE Alu -15 298 1 1371 197 3 43 chr1 121920229 121920365 -120743988 - AluJb SINE Alu -171 141 1 8179 155 36 118 chr1 121920365 121920909 -120743444 - L1M2 LINE L1 -2038 4108 3841 2305 87 0 0 chr1 121920909 121921207 -120743146 - AluSp SINE Alu -15 298 1 8179 155 36 118 chr1 121921207 121921705 -120742648 - L1M2 LINE L1 -2305 3841 3304 1984 132 3 23 chr1 121921705 121922015 -120742338 - AluSx SINE Alu -8 304 1 314 218 137 32 chr1 121922015 121922081 -120742272 - L1M4c LINE L1 -4175 2994 2936 2182 94 3 7 chr1 121922081 121922390 -120741963 + AluY SINE Alu 1 308 -3 314 218 137 32 chr1 121922390 121922447 -120741906 - L1M4c LINE L1 -4233 2936 2858 2165 103 0 0 chr1 121922511 121922801 -120741552 - AluSx SINE Alu -22 290 1 2034 136 3 0 chr1 121922844 121923153 -120741200 - AluSq SINE Alu -3 310 1 1671 183 0 7 chr1 121923159 121923454 -120740899 - AluJo SINE Alu -19 293 1 3194 238 22 50 chr1 121923454 121923829 -120740524 - L1M4c LINE L1 -4323 2845 2461 1861 176 0 0 chr1 121923829 121924141 -120740212 - AluJb SINE Alu 0 312 1 3194 238 22 50 chr1 121924141 121924923 -120739430 - L1M4c LINE L1 -4707 2461 279 244 265 24 36 chr1 121924981 121925064 -120739289 - L1M2a LINE L1 -5466 1702 1621 1032 280 52 58 chr1 121925271 121925718 -120738635 - L1M2a LINE L1 -6721 447 4 1569 219 28 5 chr1 121925736 121926133 -120738220 - L1MEc LINE L1 -3092 3123 2718 1981 219 76 35 chr1 121926136 121926856 -120737497 - L1MEc LINE L1 -4014 2382 1633 2849 122 11 28 chr1 121926965 121927400 -120736953 - MSTA LTR MaLR 0 428 1 450 248 56 50 chr1 121927447 121927645 -120736708 - L1MEc LINE L1 -4756 1640 1442 1001 76 8 0 chr1 121927645 121927776 -120736577 + AluY SINE Alu 1 132 -179 2260 88 0 28 chr1 121927887 121928205 -120736148 - AluY SINE Alu -2 309 1 1098 269 79 6 chr1 121928205 121928699 -120735654 - L1MEc LINE L1 -4977 1419 890 582 147 26 24 chr1 121928710 121928996 -120735357 + CT-rich Low_complexity Low_complexity 1 286 0 1185 175 33 0 chr1 121928998 121929209 -120735144 - AluJb SINE Alu -4 308 91 1880 220 53 31 chr1 121929228 121929777 -120734576 - L1MEc LINE L1 -5524 872 312 403 236 166 13 chr1 121929821 121929978 -120734375 - L1MEc LINE L1 -6182 214 34 1423 254 43 8 chr1 121930036 121930410 -120733943 - MER69 DNA AcHobo -1831 695 309 2034 271 121 9 chr1 121930448 121931102 -120733251 + L1MA4A LINE L1 1 727 -6482 230 128 149 0 chr1 121931242 121931289 -120733064 + L1MA4A LINE L1 711 764 -6445 1812 158 7 0 chr1 121931370 121931673 -120732680 - AluSx SINE Alu -7 305 1 2815 71 20 0 chr1 121931673 121932066 -120732287 + L1M1 LINE L1 2821 3221 -4344 2092 115 20 0 chr1 121932066 121932362 -120731991 + AluSx SINE Alu 1 302 -10 6107 142 25 33 chr1 121932362 121933317 -120731036 + L1MA4A LINE L1 5441 6356 -1009 189 0 0 0 chr1 121933317 121933338 -120731015 + (TAA)n Simple_repeat Simple_repeat 2 22 0 6107 142 25 33 chr1 121933338 121934337 -120730016 + L1MA4A LINE L1 6356 7361 -4 1193 181 102 24 chr1 121934377 121934631 -120729722 - MER69 DNA AcHobo -2252 274 1 491 318 122 50 chr1 121934710 121935088 -120729265 + L2 LINE L2 2841 3245 -27 246 196 22 0 chr1 121935277 121935323 -120729030 - L2 LINE L2 -16 3297 3251 254 190 52 17 chr1 121935323 121935335 -120729018 - MIR SINE MIR -10 252 193 242 262 109 11 chr1 121935332 121935448 -120728905 - MIR SINE MIR -2 260 135 * 337 276 138 7 chr1 121935847 121935992 -120728361 - MIR SINE MIR -17 245 82 240 279 0 59 chr1 121936254 121936322 -120728031 + L2 LINE L2 3249 3312 -1 198 0 0 0 chr1 121936512 121936534 -120727819 + (TG)n Simple_repeat Simple_repeat 2 23 0 215 366 104 0 chr1 121937466 121937649 -120726704 + MIR3 SINE MIR 3 204 -4 372 303 61 56 chr1 121937844 121938075 -120726278 + MIR SINE MIR 20 251 -11 1499 260 23 44 chr1 121938118 121938362 -120725991 - LTR16A LTR ERVL -24 426 193 2021 135 10 7 chr1 121938362 121938658 -120725695 - AluSx SINE Alu -15 297 1 1499 260 23 44 chr1 121938658 121938848 -120725505 - LTR16A LTR ERVL -257 193 1 2432 58 0 3 chr1 121939624 121939917 -120724436 - AluY SINE Alu -19 292 1 228 245 0 0 chr1 121939989 121940042 -120724311 + L2 LINE L2 3167 3219 -94 235 246 16 16 chr1 121940287 121940348 -120724005 + MER5A DNA MER1_type 73 133 -56 426 275 140 18 chr1 121940405 121940576 -120723777 + MIR SINE MIR 51 242 -20 380 282 0 19 chr1 121940705 121940808 -120723545 + MER5A DNA MER1_type 88 188 -1 21 36 0 0 chr1 121940900 121940928 -120723425 + AT_rich Low_complexity Low_complexity 1 28 0 285 29 0 0 chr1 121941058 121941092 -120723261 + (CA)n Simple_repeat Simple_repeat 1 34 0 852 295 79 0 chr1 121942805 121943059 -120721294 + Charlie8 DNA MER1_type 2 275 -2142 874 153 0 15 chr1 121943159 121943290 -120721063 - FLAM_C SINE Alu -4 129 1 2165 104 10 0 chr1 121946467 121946756 -120717597 - AluSp SINE Alu -21 292 1 785 216 106 30 chr1 121946855 121947091 -120717262 - MER112 DNA MER1_type 0 256 3 542 228 73 7 chr1 121947184 121947320 -120717033 - MER103 DNA DNA -14 152 8 2036 133 0 7 chr1 121948216 121948510 -120715843 - AluJb SINE Alu -20 292 1 599 78 0 13 chr1 121948738 121948815 -120715538 + AluJ/FLAM SINE Alu 15 90 -222 204 97 0 0 chr1 121948822 121948853 -120715500 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 1585 188 37 0 chr1 121948867 121949139 -120715214 - AluJb SINE Alu -30 282 1 1246 155 0 10 chr1 121949141 121949334 -120715019 + AluJb SINE Alu 105 295 -17 2489 90 3 0 chr1 121949336 121949647 -120714706 + AluSp SINE Alu 1 312 -1 1047 150 23 35 chr1 121949653 121949826 -120714527 + FAM SINE Alu 5 175 0 368 269 214 33 chr1 121949900 121950175 -120714178 + HAL1 LINE L1 37 361 -2146 2174 121 13 0 chr1 121950184 121950490 -120713863 - AluSx SINE Alu -2 310 1 496 217 69 46 chr1 121950714 121950931 -120713422 + HAL1 LINE L1 2227 2448 -59 446 286 0 0 chr1 121950935 121951033 -120713320 + MER94 DNA DNA 6 103 -31 793 125 0 0 chr1 121951111 121951215 -120713138 + AluSg/x SINE Alu 199 302 -10 234 0 0 0 chr1 121952225 121952251 -120712102 + (CA)n Simple_repeat Simple_repeat 2 27 0 671 252 173 18 chr1 121953213 121953439 -120710914 - MIR SINE MIR 0 262 2 2521 62 3 3 chr1 121954682 121954987 -120709366 - AluY SINE Alu -6 305 1 1704 189 10 0 chr1 121955130 121955432 -120708921 + AluJo SINE Alu 1 305 -7 1174 159 11 0 chr1 121955586 121955775 -120708578 - AluJb SINE Alu -2 310 120 2104 209 103 12 chr1 121956641 121957134 -120707219 - MLT1F LTR MaLR 0 542 5 26 50 0 0 chr1 121957301 121957341 -120707012 + AT_rich Low_complexity Low_complexity 1 40 0 972 133 0 0 chr1 121958332 121958467 -120705886 + AluSq/x SINE Alu 1 135 -178 2168 118 0 0 chr1 121958467 121958754 -120705599 + AluSx SINE Alu 1 287 -25 2311 91 10 0 chr1 121958991 121959289 -120705064 + AluSx SINE Alu 1 301 -11 34 42 0 0 chr1 121959554 121959602 -120704751 + AT_rich Low_complexity Low_complexity 1 48 0 1791 115 12 0 chr1 121959602 121959865 -120704488 + AluSx SINE Alu 45 312 0 894 153 14 0 chr1 121959867 121960011 -120704342 - L1MC1 LINE L1 -14 6319 6174 3218 220 35 27 chr1 121960159 121960940 -120703413 + L1ME2 LINE L1 5377 6163 -1 448 282 117 12 chr1 121961087 121961250 -120703103 - MIR SINE MIR -18 244 65 461 297 67 10 chr1 121961341 121961536 -120702817 - MER112 DNA MER1_type -53 207 2 2964 143 23 48 chr1 121963278 121963838 -120700515 + L1PA13 LINE L1 4009 4554 -1592 6002 105 40 16 chr1 121963838 121964158 -120700195 + L1PA13 LINE L1 4964 5275 -888 2305 110 0 0 chr1 121964158 121964467 -120699886 + AluY SINE Alu 1 309 -2 6002 105 40 16 chr1 121964467 121965323 -120699030 + L1PA13 LINE L1 5275 6163 0 724 176 40 0 chr1 121965338 121965463 -120698890 + FLAM_A SINE Alu 1 130 -3 222 37 0 0 chr1 121965858 121965885 -120698468 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 302 226 122 73 chr1 121966548 121966712 -120697641 - L2 LINE L2 -13 3300 3129 2329 118 0 0 chr1 121966814 121967120 -120697233 - AluSx SINE Alu -6 306 1 294 334 215 15 chr1 121967436 121967840 -120696513 - L2 LINE L2 -669 2645 2161 670 116 179 18 chr1 121967963 121968075 -120696278 + FLAM_C SINE Alu 1 130 -3 2071 124 7 0 chr1 121968379 121968669 -120695684 - AluSx SINE Alu -20 292 1 213 178 0 0 chr1 121968689 121968734 -120695619 + (CA)n Simple_repeat Simple_repeat 2 46 0 186 274 231 51 chr1 121968910 121969399 -120694954 - L2 LINE L2 -1209 2105 1529 2397 68 41 0 chr1 121969620 121969914 -120694439 + AluY SINE Alu 1 306 -5 565 147 11 11 chr1 121970025 121970120 -120694233 - AluJo SINE Alu -176 136 42 450 250 118 34 chr1 121970204 121970408 -120693945 - L1MC4a LINE L1 -1909 5899 5679 1998 89 0 98 chr1 121971096 121971432 -120692921 + AluSc SINE Alu 1 303 -6 1916 117 0 40 chr1 121971441 121971740 -120692613 + AluJb SINE Alu 1 287 -25 581 27 13 0 chr1 121971743 121971818 -120692535 + (GAAAA)n Simple_repeat Simple_repeat 2 77 0 593 259 82 104 chr1 121972182 121972443 -120691910 - L1MC4a LINE L1 -1963 5845 5593 1026 194 0 24 chr1 121972443 121972613 -120691740 - FAM SINE Alu -9 166 1 593 259 82 104 chr1 121972613 121972706 -120691647 - L1MC4a LINE L1 -2215 5593 5499 429 217 53 121 chr1 121973104 121973311 -120691042 - MER112 DNA MER1_type -1 259 67 234 62 0 0 chr1 121973851 121973883 -120690470 + (TG)n Simple_repeat Simple_repeat 1 32 0 324 223 0 53 chr1 121973952 121974046 -120690307 - L1ME4a LINE L1 -271 5850 5762 2308 91 0 3 chr1 121974062 121974358 -120689995 - AluY SINE Alu -15 296 2 2079 137 10 0 chr1 121975067 121975367 -120688986 + AluSq SINE Alu 1 303 -10 948 145 0 0 chr1 121975431 121975562 -120688791 - FLAM_C SINE Alu -1 132 2 21 0 0 0 chr1 121975567 121975588 -120688765 + AT_rich Low_complexity Low_complexity 1 21 0 4489 189 52 86 chr1 121975741 121975960 -120688393 + L1ME1 LINE L1 3899 4124 -2022 438 36 0 0 chr1 121975960 121976016 -120688337 + (CA)n Simple_repeat Simple_repeat 2 57 0 4489 189 52 86 chr1 121976016 121976108 -120688245 + L1ME1 LINE L1 4124 4218 -1928 1548 204 4 0 chr1 121976108 121976382 -120687971 - AluJb SINE Alu -28 284 10 4489 189 52 86 chr1 121976382 121976482 -120687871 + L1ME1 LINE L1 4218 4320 -1826 2252 106 0 13 chr1 121976482 121976784 -120687569 - AluSx SINE Alu -14 298 1 4489 189 52 86 chr1 121976784 121976844 -120687509 + L1ME1 LINE L1 4320 4381 -1765 1845 128 7 43 chr1 121976844 121977148 -120687205 + AluJb SINE Alu 1 293 -19 4489 189 52 86 chr1 121977148 121977950 -120686403 + L1ME1 LINE L1 4381 5128 -1018 2182 120 3 0 chr1 121977950 121978251 -120686102 + AluSx SINE Alu 1 302 -10 4489 189 52 86 chr1 121978251 121978328 -120686025 + L1ME1 LINE L1 5128 5206 -940 1241 119 25 5 chr1 121978465 121978667 -120685686 - L1MA8 LINE L1 0 6291 6086 3160 203 34 62 chr1 121978690 121978881 -120685472 + L1ME1 LINE L1 5175 5370 -796 1802 178 6 13 chr1 121978881 121979195 -120685158 + AluJb SINE Alu 1 312 0 3160 203 34 62 chr1 121979195 121980001 -120684352 + L1ME1 LINE L1 5370 6161 -5 265 158 0 158 chr1 121980341 121980373 -120683980 - FLAM_A SINE Alu -169 133 118 2359 74 33 7 chr1 121980373 121980672 -120683681 + AluSg SINE Alu 2 308 -2 265 158 0 158 chr1 121980672 121980715 -120683638 - FLAM_A SINE Alu -184 118 70 423 147 32 63 chr1 121980722 121980817 -120683536 - AluSc SINE Alu -216 93 2 326 259 284 15 chr1 121980894 121981095 -120683258 - MIR SINE MIR 0 262 8 1771 163 14 14 chr1 121981212 121981501 -120682852 + AluJb SINE Alu 6 294 -18 2105 116 10 7 chr1 121981531 121981825 -120682528 + AluSg SINE Alu 1 295 -15 495 162 14 0 chr1 121982423 121982497 -120681856 - tRNA-His-CAC tRNA tRNA 0 75 1 508 182 45 0 chr1 121984671 121984759 -120679594 - L2 LINE L2 -1 3271 3180 2227 90 17 3 chr1 121985181 121985471 -120678882 + AluSc SINE Alu 2 295 -14 2229 99 3 7 chr1 121986117 121986420 -120677933 + AluSc SINE Alu 1 302 -7 1983 152 3 10 chr1 121986763 121987065 -120677288 - AluJb SINE Alu -12 300 1 2140 116 7 0 chr1 121987596 121987888 -120676465 - AluSx SINE Alu -18 294 1 2404 94 0 16 chr1 121987888 121988206 -120676147 - AluSq SINE Alu 0 313 1 213 139 0 0 chr1 121988288 121988331 -120676022 + (TAAAAA)n Simple_repeat Simple_repeat 1 43 0 547 241 123 12 chr1 121988388 121988558 -120675795 + MIR SINE MIR 46 234 -28 2195 121 0 22 chr1 121989048 121989363 -120674990 + AluSx SINE Alu 1 308 -4 1355 73 0 0 chr1 121990122 121990286 -120674067 + AluY SINE Alu 133 296 -15 32 67 0 0 chr1 121991464 121991524 -120672829 + AT_rich Low_complexity Low_complexity 1 60 0 2232 105 7 0 chr1 121991564 121991859 -120672494 - AluSp SINE Alu -16 297 1 219 69 0 0 chr1 121992336 121992365 -120671988 + (CAGGG)n Simple_repeat Simple_repeat 2 30 0 2299 114 0 3 chr1 121992822 121993128 -120671225 - AluSx SINE Alu -7 305 1 614 158 108 0 chr1 121993630 121993750 -120670603 + FLAM_C SINE Alu 1 133 0 2071 136 0 7 chr1 121993838 121994140 -120670213 + AluJb SINE Alu 12 311 -1 2234 122 43 5 chr1 121994330 121994699 -120669654 + MLT1B LTR MaLR 8 390 0 867 178 8 147 chr1 121995313 121995571 -120668782 - MIR SINE MIR -10 252 31 373 202 36 12 chr1 121995669 121995753 -120668600 - MIR3 SINE MIR -22 186 101 2472 65 0 0 chr1 121995785 121996077 -120668276 - AluSg SINE Alu -18 292 1 209 179 0 0 chr1 121996189 121996228 -120668125 + (TG)n Simple_repeat Simple_repeat 2 40 0 2390 95 0 3 chr1 121996764 121997069 -120667284 + AluSq SINE Alu 1 304 -9 510 165 0 0 chr1 121997373 121997452 -120666901 + FRAM/FAM SINE Alu 4 82 -94 180 0 0 0 chr1 121997463 121997483 -120666870 + (A)n Simple_repeat Simple_repeat 1 20 0 2127 115 21 0 chr1 121997572 121997860 -120666493 - AluSq SINE Alu -19 294 1 2016 146 3 7 chr1 121998054 121998349 -120666004 - AluJb SINE Alu -14 298 5 389 346 150 29 chr1 121998424 121998989 -120665364 - L2 LINE L2 -20 3252 2595 216 0 0 0 chr1 121999183 121999207 -120665146 + (TAA)n Simple_repeat Simple_repeat 3 26 0 2216 89 48 0 chr1 122000634 122000925 -120663428 + AluSq SINE Alu 1 305 -8 27 62 0 0 chr1 122001096 122001144 -120663209 + AT_rich Low_complexity Low_complexity 1 48 0 2069 87 0 83 chr1 122001144 122001456 -120662897 - AluSq SINE Alu -27 286 1 1951 148 21 0 chr1 122001820 122002111 -120662242 + AluJb SINE Alu 1 297 -15 206 227 0 0 chr1 122002163 122002207 -120662146 - MIR SINE MIR -37 225 182 2465 185 102 70 chr1 122002263 122002371 -120661982 - L1ME2 LINE L1 -9 6155 6052 2362 103 0 3 chr1 122002371 122002682 -120661671 - AluSg SINE Alu 0 310 1 2465 185 102 70 chr1 122002682 122003853 -120660500 - L1ME2 LINE L1 -112 6052 4835 31 44 0 0 chr1 122003906 122003951 -120660402 + AT_rich Low_complexity Low_complexity 1 45 0 2563 62 3 0 chr1 122004417 122004721 -120659632 - AluY SINE Alu -6 305 1 777 154 7 22 chr1 122004814 122004931 -120659422 + AluJo SINE Alu 1 117 -195 297 68 0 0 chr1 122004931 122004975 -120659378 + (TA)n Simple_repeat Simple_repeat 1 44 0 777 154 7 22 chr1 122004975 122004993 -120659360 + AluJo SINE Alu 117 134 -178 3654 149 110 4 chr1 122005000 122005753 -120658600 + L1MB7 LINE L1 5335 6167 -17 2227 105 0 7 chr1 122005766 122006072 -120658281 + AluSc SINE Alu 1 304 -5 570 285 33 15 chr1 122007040 122007314 -120657039 + AluJo SINE Alu 1 279 -33 279 0 0 0 chr1 122007330 122007361 -120656992 + (CA)n Simple_repeat Simple_repeat 1 31 0 2403 99 0 10 chr1 122007753 122008065 -120656288 - AluSx SINE Alu -3 309 1 1294 185 32 95 chr1 122008066 122008445 -120655908 - MLT1A1 LTR MaLR -10 355 1 570 153 10 10 chr1 122008591 122008689 -120655664 - FLAM_A SINE Alu -11 131 34 777 317 71 11 chr1 122009009 122009460 -120654893 + L1MC/D LINE L1 5314 5791 -2017 2491 52 0 10 chr1 122009740 122010047 -120654306 + AluY SINE Alu 1 304 -7 2280 86 27 3 chr1 122010068 122010369 -120653984 - AluSx SINE Alu -4 308 1 2182 113 0 3 chr1 122010652 122010954 -120653399 + AluSc SINE Alu 1 301 -8 2447 85 0 0 chr1 122011215 122011522 -120652831 + AluY SINE Alu 1 307 -4 961 217 5 24 chr1 122011586 122011798 -120652555 + AluJo SINE Alu 85 292 -20 559 308 78 1 chr1 122012356 122012687 -120651666 - LTR16C LTR ERVL 0 491 117 1853 102 0 45 chr1 122012810 122013074 -120651279 + AluSx SINE Alu 56 307 -5 2127 68 3 62 chr1 122013348 122013655 -120650698 + AluY SINE Alu 21 309 -2 2373 98 10 0 chr1 122013949 122014255 -120650098 + AluSx SINE Alu 1 309 -3 219 224 60 60 chr1 122014339 122014406 -120649947 + MIR SINE MIR 87 153 -55 227 365 148 17 chr1 122014515 122014630 -120649723 + L2 LINE L2 3119 3248 -24 816 144 0 8 chr1 122015950 122016075 -120648278 + FLAM_C SINE Alu 13 136 -7 962 139 6 36 chr1 122016699 122016865 -120647488 + AluJb SINE Alu 138 298 -14 24 0 0 0 chr1 122016971 122016995 -120647358 + AT_rich Low_complexity Low_complexity 1 24 0 463 288 49 78 chr1 122017024 122017317 -120647036 + L1ME LINE L1 5327 5627 -535 2374 76 3 3 chr1 122017317 122017620 -120646733 + AluSp SINE Alu 3 305 -8 1806 156 0 38 chr1 122017627 122017961 -120646392 + AluJo SINE Alu 1 312 0 463 288 49 78 chr1 122017961 122018169 -120646184 + L1ME LINE L1 5633 5821 -341 275 232 0 0 chr1 122018174 122018243 -120646110 + L1ME2 LINE L1 5451 5519 -643 501 180 4 16 chr1 122018245 122018475 -120645878 + AluJo SINE Alu 1 296 -16 2401 196 53 31 chr1 122018478 122018665 -120645688 + L1ME2 LINE L1 5514 5695 -469 2225 110 0 0 chr1 122018665 122018964 -120645389 + AluSx SINE Alu 1 299 -13 2401 196 53 31 chr1 122018964 122019394 -120644959 + L1ME2 LINE L1 5695 6145 -19 1330 195 4 0 chr1 122019432 122019658 -120644695 + AluJb SINE Alu 70 296 -16 2363 78 7 3 chr1 122019691 122019987 -120644366 + AluSq SINE Alu 1 297 -16 1481 190 29 4 chr1 122020530 122020804 -120643549 + AluJo SINE Alu 1 281 -31 297 0 0 0 chr1 122020816 122020849 -120643504 + (CA)n Simple_repeat Simple_repeat 1 33 0 1510 154 0 0 chr1 122024409 122024643 -120639710 - AluSq SINE Alu -79 234 1 312 159 0 0 chr1 122024853 122024916 -120639437 - Alu SINE Alu -1 301 239 2373 73 0 3 chr1 122025054 122025354 -120638999 - AluSg SINE Alu -11 299 1 2212 107 0 13 chr1 122026177 122026475 -120637878 - AluSg SINE Alu -13 297 4 2162 99 0 0 chr1 122026692 122026974 -120637379 + AluSp SINE Alu 1 282 -31 2227 129 0 6 chr1 122027074 122027385 -120636968 - AluSx SINE Alu -3 309 1 1839 167 0 30 chr1 122028237 122028536 -120635817 + AluJo SINE Alu 3 292 -20 928 149 6 31 chr1 122028707 122028868 -120635485 + FRAM SINE Alu 1 157 -19 538 265 152 72 chr1 122029117 122029188 -120635165 - L1 LINE L1 -2017 4129 4065 1730 155 28 14 chr1 122029188 122029478 -120634875 + AluJb SINE Alu 1 294 -18 538 265 152 72 chr1 122029478 122029821 -120634532 - L1 LINE L1 -2081 4065 3682 370 286 0 11 chr1 122030256 122030347 -120634006 - MIR SINE MIR -126 136 47 474 247 13 60 chr1 122030571 122030721 -120633632 - MER5A DNA MER1_type -34 155 13 640 115 19 0 chr1 122031232 122031336 -120633017 - AluSc SINE Alu -2 307 202 414 149 15 0 chr1 122031336 122031403 -120632950 - AluY SINE Alu -131 170 103 2023 142 0 0 chr1 122031503 122031792 -120632561 + AluSq SINE Alu 8 296 -17 315 320 70 70 chr1 122033291 122033463 -120630890 - L3 LINE CR1 -2 1575 1404 235 88 0 0 chr1 122033632 122033666 -120630687 + U2 snRNA snRNA 4 37 -151 1392 254 68 3 chr1 122034046 122034428 -120629925 - L2 LINE L2 -507 2807 2401 1998 123 0 18 chr1 122034650 122034935 -120629418 + AluSx SINE Alu 1 280 -32 2367 91 10 0 chr1 122035016 122035313 -120629040 + AluSp SINE Alu 1 300 -13 661 109 30 0 chr1 122035404 122035505 -120628848 + U13 snRNA snRNA 1 104 0 707 183 25 0 chr1 122036002 122036122 -120628231 + FLAM_A SINE Alu 1 123 -10 30 27 0 0 chr1 122036374 122036411 -120627942 + AT_rich Low_complexity Low_complexity 1 37 0 310 191 101 22 chr1 122036965 122037054 -120627299 + L1ME4a LINE L1 5873 5968 -153 23 54 0 0 chr1 122037789 122037826 -120626527 + AT_rich Low_complexity Low_complexity 1 37 0 979 85 39 16 chr1 122038014 122038143 -120626210 + AluSq/x SINE Alu 1 132 -181 1515 117 0 0 chr1 122038243 122038440 -120625913 - AluSq SINE Alu -116 197 1 346 247 181 36 chr1 122038532 122038698 -120625655 + MIR SINE MIR 16 205 -57 201 182 0 0 chr1 122040121 122040154 -120624199 + T-rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr1 122040609 122040633 -120623720 + AT_rich Low_complexity Low_complexity 1 24 0 579 180 0 0 chr1 122040633 122040722 -120623631 - AluSg/x SINE Alu -18 291 203 339 25 0 0 chr1 122040802 122040842 -120623511 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 2161 105 3 3 chr1 122040842 122041128 -120623225 - AluSp SINE Alu -27 286 1 677 181 65 117 chr1 122041269 122041434 -120622919 - Charlie1b DNA MER1_type -2388 373 232 2072 110 58 0 chr1 122041434 122041726 -120622627 - AluSq SINE Alu -4 309 1 677 181 65 117 chr1 122041726 122041885 -120622468 - Charlie1b DNA MER1_type -2529 232 66 447 260 103 58 chr1 122042171 122042413 -120621940 + MIR SINE MIR 5 257 -5 216 67 0 0 chr1 122043304 122043334 -120621019 + (T)n Simple_repeat Simple_repeat 1 30 0 1617 106 4 0 chr1 122045899 122046134 -120618219 - MER41B LTR ERV1 -399 236 1 786 303 120 26 chr1 122048724 122049107 -120615246 + L3 LINE CR1 739 1157 -420 1356 179 77 55 chr1 122049392 122049755 -120614598 - MER31B LTR ERV1 0 466 96 364 194 28 0 chr1 122049855 122049927 -120614426 - MER31B LTR ERV1 -392 74 1 302 329 58 15 chr1 122050213 122050350 -120614003 + L3 LINE CR1 1178 1320 -257 189 370 76 25 chr1 122050418 122050537 -120613816 + L2 LINE L2 2992 3116 -156 271 321 15 61 chr1 122050624 122050755 -120613598 + L2 LINE L2 3147 3271 -1 202 178 0 44 chr1 122050932 122050977 -120613376 - L2 LINE L2 -1 3312 3270 324 318 104 13 chr1 122051087 122051241 -120613112 + MIR SINE MIR 64 231 -31 394 286 66 37 chr1 122051574 122051894 -120612459 - L2 LINE L2 -199 3073 2660 479 216 94 18 chr1 122051894 122052065 -120612288 + MER112 DNA MER1_type 19 202 -58 181 156 0 89 chr1 122052089 122052134 -120612219 + L3 LINE CR1 1520 1560 -17 331 264 46 23 chr1 122052334 122052421 -120611932 + L1MC4 LINE L1 6614 6702 -1340 53 0 0 0 chr1 122052428 122052481 -120611872 + AT_rich Low_complexity Low_complexity 1 53 0 6606 71 23 32 chr1 122053213 122054244 -120610109 + SVA Other Other 433 1385 -1 22 35 0 0 chr1 122054244 122054273 -120610080 + AT_rich Low_complexity Low_complexity 1 29 0 605 213 149 50 chr1 122054561 122054782 -120609571 - MIR SINE MIR -10 252 10 1996 130 43 17 chr1 122054941 122055240 -120609113 + AluJb SINE Alu 1 307 -5 2126 116 3 26 chr1 122055244 122055546 -120608807 + AluSp SINE Alu 1 295 -18 227 333 103 26 chr1 122055743 122055860 -120608493 + MER5A DNA MER1_type 63 188 -1 1529 276 167 15 chr1 122056305 122057105 -120607248 + L2 LINE L2 2382 3313 0 1235 153 60 34 chr1 122057606 122057841 -120606512 - AluJo SINE Alu -2 310 70 25 0 0 0 chr1 122057882 122057907 -120606446 + AT_rich Low_complexity Low_complexity 1 25 0 2170 117 7 3 chr1 122057907 122058216 -120606137 - AluSg SINE Alu 0 310 1 755 156 16 8 chr1 122058219 122058347 -120606006 - AluJo/FLAM SINE Alu -173 129 1 920 186 35 6 chr1 122058530 122058702 -120605651 + MER5B DNA MER1_type 2 178 0 1007 174 267 19 chr1 122059533 122059596 -120604757 - MER31B LTR ERV1 -1 465 419 2039 114 48 10 chr1 122059596 122059886 -120604467 + AluSq SINE Alu 1 301 -12 1007 174 267 19 chr1 122059886 122060133 -120604220 - MER31B LTR ERV1 -47 419 78 4464 133 22 37 chr1 122060691 122061668 -120602685 - L1MA7 LINE L1 -186 6105 5145 270 313 0 40 chr1 122062176 122062275 -120602078 - MIR SINE MIR 0 262 168 374 57 19 0 chr1 122062301 122062354 -120601999 - U7 snRNA snRNA -6 57 4 181 208 143 52 chr1 122062355 122062432 -120601921 - MIR SINE MIR -81 181 98 181 321 0 48 chr1 122062549 122062633 -120601720 - L2 LINE L2 -8 3264 3185 952 101 176 0 chr1 122063148 122063296 -120601057 - AluSg SINE Alu -136 174 1 2307 100 3 0 chr1 122063324 122063623 -120600730 + AluSg SINE Alu 1 300 -10 23 78 0 0 chr1 122064003 122064054 -120600299 + AT_rich Low_complexity Low_complexity 1 51 0 308 326 145 0 chr1 122064434 122064676 -120599677 - L3 LINE CR1 -759 818 542 * 336 303 26 66 chr1 122064675 122064827 -120599526 + MIR SINE MIR 42 187 -75 201 218 269 0 chr1 122064872 122064950 -120599403 - L2 LINE L2 0 3313 3215 797 158 84 64 chr1 122064961 122065011 -120599342 + MER58 DNA MER1_type 1 49 -292 1808 167 0 17 chr1 122065011 122065327 -120599026 - AluJo SINE Alu 0 311 1 797 158 84 64 chr1 122065327 122065476 -120598877 + MER58 DNA MER1_type 49 206 -135 328 295 97 58 chr1 122065543 122065750 -120598603 - L2 LINE L2 -96 3217 3003 36 97 0 0 chr1 122066418 122066531 -120597822 + GC_rich Low_complexity Low_complexity 1 113 0 185 235 15 73 chr1 122067076 122067127 -120597226 - L2 LINE L2 -1181 2133 2081 554 0 15 0 chr1 122067127 122067193 -120597160 + (TG)n Simple_repeat Simple_repeat 2 68 0 189 0 0 0 chr1 122067193 122067214 -120597139 + (GA)n Simple_repeat Simple_repeat 2 22 0 185 235 15 73 chr1 122067214 122067229 -120597124 - L2 LINE L2 -1231 2083 2070 401 335 68 14 chr1 122069040 122069261 -120595092 + MIR SINE MIR 20 252 -10 577 301 12 12 chr1 122070120 122070286 -120594067 + MIR SINE MIR 32 197 -65 225 244 0 22 chr1 122070363 122070408 -120593945 + L2 LINE L2 3209 3252 -20 192 139 83 28 chr1 122071214 122071250 -120593103 - MIR SINE MIR -85 123 86 213 340 160 0 chr1 122074210 122074316 -120590037 + MER5A DNA MER1_type 1 123 -66 699 216 47 23 chr1 122074330 122074501 -120589852 - MER5B DNA MER1_type 0 178 4 276 327 9 27 chr1 122074589 122074699 -120589654 + MER5B DNA MER1_type 9 116 -62 268 195 52 52 chr1 122075997 122076074 -120588279 - MIR SINE MIR -1 261 185 2202 109 0 45 chr1 122076138 122076451 -120587902 - AluSx SINE Alu -13 299 1 294 299 104 19 chr1 122076526 122076680 -120587673 - MIR3 SINE MIR -37 171 5 2053 136 10 7 chr1 122077564 122077866 -120586487 - AluSx SINE Alu -9 303 1 358 202 212 0 chr1 122077880 122077979 -120586374 - MIR3 SINE MIR -54 154 35 347 275 0 0 chr1 122078279 122078359 -120585994 - MER91B DNA MER1_type -107 83 4 512 111 69 0 chr1 122078397 122078469 -120585884 - AluJo SINE Alu -22 290 214 690 160 144 8 chr1 122078471 122078596 -120585757 - AluJo SINE Alu -169 143 2 180 0 0 0 chr1 122079938 122079958 -120584395 + (A)n Simple_repeat Simple_repeat 1 20 0 1773 169 44 3 chr1 122079960 122080256 -120584097 + AluJb SINE Alu 1 308 -4 524 268 121 19 chr1 122080374 122080531 -120583822 - MIR3 SINE MIR -12 196 24 389 274 158 94 chr1 122081040 122081282 -120583071 + L2 LINE L2 2883 3163 -150 1733 151 11 32 chr1 122081282 122081566 -120582787 - AluJb SINE Alu -23 289 12 389 274 158 94 chr1 122081566 122081728 -120582625 + L2 LINE L2 3163 3313 0 836 294 101 46 chr1 122082315 122082860 -120581493 + L2 LINE L2 2172 2746 -568 261 128 0 0 chr1 122082917 122082964 -120581389 + (CTA)n Simple_repeat Simple_repeat 1 47 0 235 286 83 0 chr1 122083395 122083479 -120580874 + L2 LINE L2 2796 2886 -428 574 249 18 41 chr1 122083496 122083665 -120580688 - MIR SINE MIR 0 262 98 549 267 69 94 chr1 122083698 122084058 -120580295 + L2 LINE L2 2921 3271 -1 2445 94 0 0 chr1 122086153 122086462 -120577891 - AluSx SINE Alu -3 309 1 982 208 60 11 chr1 122086474 122086739 -120577614 - L1MB8 LINE L1 0 6178 5901 351 146 41 49 chr1 122286819 122286944 -120377409 + G-rich Low_complexity Low_complexity 1 123 0 771 241 12 0 chr1 122287156 122287318 -120377035 + FAM SINE Alu 1 164 -11 424 296 341 8 chr1 122287350 122287722 -120376631 + L2 LINE L2 2805 3300 -13 2574 52 0 0 chr1 122287727 122288036 -120376317 - AluY SINE Alu -2 309 1 2096 115 0 16 chr1 122288036 122288340 -120376013 - AluSg SINE Alu -11 299 1 1473 193 0 4 chr1 122288342 122288607 -120375746 - AluJo SINE Alu -11 301 38 619 295 79 24 chr1 122288607 122288861 -120375492 + L3 LINE CR1 487 754 -823 1288 241 53 44 chr1 122288862 122289273 -120375080 + L1ME3A LINE L1 5735 6149 -21 2069 114 3 0 chr1 122289285 122289574 -120374779 - AluSq SINE Alu -23 290 1 2374 70 0 10 chr1 122289639 122289941 -120374412 - AluY SINE Alu -12 299 1 334 339 8 8 chr1 122289951 122290069 -120374284 - L1 LINE L1 -2056 4090 3973 350 282 66 0 chr1 122290085 122290234 -120374119 + L1ME LINE L1 5457 5619 -502 2222 77 7 0 chr1 122290234 122290520 -120373833 + AluSx SINE Alu 1 288 -24 2016 85 88 0 chr1 122290751 122291034 -120373319 - AluY SINE Alu -3 308 1 210 191 0 0 chr1 122291303 122291345 -120373008 + CT-rich Low_complexity Low_complexity 1 42 0 859 227 22 11 chr1 122291407 122291592 -120372761 - MIR SINE MIR -1 261 75 2002 123 3 3 chr1 122291623 122291923 -120372430 + AluSg SINE Alu 1 300 -10 1931 128 0 14 chr1 122292228 122292543 -120371810 - AluSx SINE Alu 0 311 1 21 0 0 0 chr1 122293691 122293712 -120370641 + AT_rich Low_complexity Low_complexity 1 21 0 2319 63 0 7 chr1 122293769 122294072 -120370281 + AluY SINE Alu 3 303 -8 2228 72 3 7 chr1 122294178 122294471 -120369882 + AluSp SINE Alu 1 292 -21 1714 124 49 42 chr1 122294482 122294789 -120369564 + AluSx SINE Alu 1 309 -3 484 235 19 21 chr1 122294947 122295123 -120369230 + L1PA4 LINE L1 5982 6155 0 1738 121 4 29 chr1 122295434 122295714 -120368639 - AluSx SINE Alu -39 273 1 205 335 165 11 chr1 122295716 122295976 -120368377 - L2 LINE L2 -568 2746 2447 2207 91 3 14 chr1 122296341 122296638 -120367715 - AluSx SINE Alu -18 294 1 2339 78 3 3 chr1 122296984 122297290 -120367063 - AluSc SINE Alu -3 306 1 2171 94 3 34 chr1 122297300 122297620 -120366733 - AluSg SINE Alu 0 310 1 2319 68 7 3 chr1 122297628 122297936 -120366417 - AluY SINE Alu -2 309 1 1448 102 0 0 chr1 122297944 122298140 -120366213 - AluSg/x SINE Alu -32 280 85 424 224 127 67 chr1 122298258 122298423 -120365930 - MIR SINE MIR -42 220 46 2103 80 3 61 chr1 122298436 122298762 -120365591 - AluY SINE Alu -4 307 1 2130 95 3 0 chr1 122300141 122300426 -120363927 + AluSp SINE Alu 5 290 -23 688 105 58 6 chr1 122300426 122300597 -120363756 + GA-rich Low_complexity Low_complexity 1 180 0 192 179 0 154 chr1 122300872 122300950 -120363403 + L2 LINE L2 3231 3296 -17 1383 183 110 8 chr1 122301150 122301585 -120362768 + LTR54 LTR ERV1 1 498 0 296 345 55 0 chr1 122302031 122302196 -120362157 - L3 LINE CR1 -54 1523 1350 197 204 102 57 chr1 122302225 122302313 -120362040 - L2 LINE L2 -39 3233 3142 213 256 167 0 chr1 122302618 122302696 -120361657 - MER5A DNA MER1_type 0 189 99 26 0 0 0 chr1 122303704 122303730 -120360623 + AT_rich Low_complexity Low_complexity 1 26 0 740 164 63 25 chr1 122303967 122304126 -120360227 - MLT1F1 LTR MaLR -43 524 360 1753 237 15 56 chr1 122304140 122304402 -120359951 + LTR55 LTR ERV 1 231 -317 2328 83 0 0 chr1 122304402 122304702 -120359651 + AluY SINE Alu 2 301 -10 1753 237 15 56 chr1 122304702 122304975 -120359378 + LTR55 LTR ERV 231 514 -34 5284 91 10 38 chr1 122304975 122305662 -120358691 - L1PA14 LINE L1 -4 6157 5452 240 35 0 0 chr1 122305662 122305691 -120358662 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1892 119 11 0 chr1 122305691 122305969 -120358384 - AluSg SINE Alu -29 281 1 5284 91 10 38 chr1 122305969 122306074 -120358279 - L1PA14 LINE L1 -707 5454 5386 2182 101 0 7 chr1 122306105 122306413 -120357940 - AluSg SINE Alu 0 310 5 1130 148 60 145 chr1 122306430 122306577 -120357776 - MLT1F1 LTR MaLR -263 304 146 270 0 0 0 chr1 122306577 122306607 -120357746 + (TC)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr1 122306606 122306632 -120357721 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1130 148 60 145 chr1 122306607 122306720 -120357633 - MLT1F1 LTR MaLR -421 146 25 2136 120 0 3 chr1 122306720 122307029 -120357324 - AluSx SINE Alu -4 308 1 1130 148 60 145 chr1 122307029 122307058 -120357295 - MLT1F1 LTR MaLR -542 25 69 2218 103 3 0 chr1 122307058 122307359 -120356994 - AluSp SINE Alu -11 302 1 1130 148 60 145 chr1 122307359 122307424 -120356929 - MLT1F1 LTR MaLR -497 70 1 330 269 10 29 chr1 122307713 122307817 -120356536 + MIR SINE MIR 42 143 -65 1811 138 3 33 chr1 122307829 122308134 -120356219 - AluSx SINE Alu -16 296 1 263 189 151 94 chr1 122308160 122308319 -120356034 - LTR37A LTR ERV1 -36 390 223 530 204 104 99 chr1 122308357 122308578 -120355775 - MER39 LTR ERV1 -12 695 474 1290 193 52 56 chr1 122308593 122309125 -120355228 - LTR48 LTR ERV1 -12 775 53 728 212 67 80 chr1 122309094 122309359 -120354994 - MER39 LTR ERV1 -262 445 1 * 2238 92 0 0 chr1 122309507 122309799 -120354554 + AluSq SINE Alu 1 292 -21 1891 86 11 8 chr1 122309977 122310245 -120354108 + AluSx SINE Alu 11 279 -33 219 36 0 0 chr1 122310299 122310327 -120354026 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 122310900 122310921 -120353432 + AT_rich Low_complexity Low_complexity 1 21 0 4965 147 22 42 chr1 122310976 122311055 -120353298 + L1M2 LINE L1 4359 4438 -1790 748 43 0 0 chr1 122311055 122311148 -120353205 - L1PA4 LINE L1 -3 6152 6060 4965 147 22 42 chr1 122311148 122311383 -120352970 + L1M2 LINE L1 4438 4676 -1552 2306 73 7 0 chr1 122311383 122311686 -120352667 + AluSp SINE Alu 1 305 -8 4965 147 22 42 chr1 122311686 122312526 -120351827 + L1M2 LINE L1 4676 5484 -744 731 97 0 0 chr1 122312530 122312623 -120351730 + AluS SINE Alu 7 99 -214 1066 177 0 15 chr1 122312625 122312734 -120351619 + L1MA6 LINE L1 5380 5489 -811 1963 120 4 0 chr1 122312734 122313009 -120351344 + AluSx SINE Alu 7 282 -30 194 0 39 0 chr1 122313017 122313043 -120351310 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1066 177 0 15 chr1 122313043 122313127 -120351226 + L1MA6 LINE L1 5496 5579 -721 964 125 13 0 chr1 122313124 122313276 -120351077 - L1 LINE L1 -1138 5008 4855 * 3190 147 94 56 chr1 122313279 122313475 -120350878 + L1MA6 LINE L1 5587 5774 -526 2280 103 0 0 chr1 122313475 122313785 -120350568 + AluSx SINE Alu 1 310 -2 3190 147 94 56 chr1 122313785 122314270 -120350083 + L1MA6 LINE L1 5774 6294 -6 411 306 28 7 chr1 122314799 122314943 -120349410 + MIR3 SINE MIR 58 204 -4 353 262 64 51 chr1 122315171 122315325 -120349028 - MIR SINE MIR -48 214 55 2159 79 38 0 chr1 122315327 122315618 -120348735 - AluSg SINE Alu -8 302 1 249 33 0 0 chr1 122315618 122315648 -120348705 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 568 108 0 0 chr1 122315648 122315722 -120348631 - AluSp SINE Alu -32 281 208 1216 91 6 0 chr1 122315723 122315888 -120348465 - AluSp SINE Alu -147 166 1 882 122 0 34 chr1 122315900 122316048 -120348305 - FLAM_C SINE Alu 0 143 1 343 207 11 46 chr1 122316099 122316186 -120348167 - MER69 DNA AcHobo -5 2521 2438 303 284 21 11 chr1 122316185 122316280 -120348073 - MER69 DNA AcHobo -2404 122 27 * 558 294 55 51 chr1 122316296 122316336 -120348017 - MIR SINE MIR -21 241 203 2127 99 0 30 chr1 122316336 122316639 -120347714 - AluSg SINE Alu -14 296 3 1838 141 34 0 chr1 122316642 122316933 -120347420 - AluSx SINE Alu -11 301 1 558 294 55 51 chr1 122316933 122317123 -120347230 - MIR SINE MIR -60 202 6 301 258 45 0 chr1 122317501 122317567 -120346786 + MIR SINE MIR 119 187 -75 199 217 0 22 chr1 122317636 122317682 -120346671 + MIR SINE MIR 213 257 -5 * 213 270 135 32 chr1 122317673 122317799 -120346554 + L2 LINE L2 3161 3299 -14 422 278 129 26 chr1 122317845 122318039 -120346314 + MIR SINE MIR 17 230 -32 381 272 115 11 chr1 122318231 122318407 -120345946 - MIR SINE MIR -57 205 17 24 32 0 0 chr1 122318724 122318755 -120345598 + GC_rich Low_complexity Low_complexity 1 31 0 335 290 53 37 chr1 122320594 122320756 -120343597 - MIR3 SINE MIR -18 190 57 395 291 64 117 chr1 122321058 122321433 -120342920 - L2 LINE L2 -40 3273 2919 2016 104 0 27 chr1 122321660 122321959 -120342394 + AluSx SINE Alu 11 301 -11 1239 189 132 117 chr1 122322440 122322766 -120341587 - L1MC5 LINE L1 -158 7803 7483 557 72 0 60 chr1 122322766 122322849 -120341504 + MADE1 DNA Mariner 3 80 0 1239 189 132 117 chr1 122322849 122323266 -120341087 - L1MC5 LINE L1 -478 7483 7049 51 17 0 0 chr1 122324069 122324127 -120340226 + AT_rich Low_complexity Low_complexity 1 58 0 1436 160 19 19 chr1 122324127 122324395 -120339958 - AluJo SINE Alu -41 271 4 1527 218 83 26 chr1 122324911 122325277 -120339076 + Charlie4a DNA MER1_type 14 414 -1547 786 113 15 53 chr1 122325277 122325410 -120338943 + FLAM_C SINE Alu 3 130 -3 1527 218 83 26 chr1 122325410 122325511 -120338842 + Charlie4a DNA MER1_type 414 508 0 1721 82 5 0 chr1 122325764 122325983 -120338370 + AluSp SINE Alu 1 220 -93 1989 65 0 84 chr1 122325983 122326289 -120338064 + AluY SINE Alu 25 306 -5 1851 137 10 0 chr1 122326312 122326604 -120337749 + AluSx SINE Alu 1 295 -17 333 0 0 0 chr1 122326614 122326651 -120337702 + (CA)n Simple_repeat Simple_repeat 2 38 0 1737 197 89 11 chr1 122326654 122327024 -120337329 + MER21B LTR ERV1 465 863 0 278 144 50 200 chr1 122327032 122327192 -120337161 + L1M4 LINE L1 4579 4714 -1432 1725 132 3 56 chr1 122327199 122327502 -120336851 + AluSx SINE Alu 9 295 -17 279 259 129 14 chr1 122328438 122328585 -120335768 - L1ME4a LINE L1 -78 6043 5880 416 262 143 34 chr1 122328600 122328837 -120335516 - L1ME4a LINE L1 -437 5684 5422 2248 81 7 13 chr1 122328842 122329151 -120335202 - AluY SINE Alu -4 307 1 1952 109 11 0 chr1 122329366 122329683 -120334670 - AluSq SINE Alu 0 320 1 1059 82 0 0 chr1 122329683 122329818 -120334535 - AluSq/x SINE Alu -178 135 1 445 252 163 67 chr1 122329926 122330239 -120334114 - L2 LINE L2 0 3313 2971 601 274 76 85 chr1 122330279 122330675 -120333678 - L1ME4a LINE L1 -1172 4974 4580 2243 56 0 14 chr1 122330675 122331003 -120333350 + AluY SINE Alu 1 324 0 601 274 76 85 chr1 122331003 122331051 -120333302 - L1ME4a LINE L1 -1566 4580 4533 1528 196 3 20 chr1 122331184 122331490 -120332863 - AluJo SINE Alu -11 301 1 540 264 173 32 chr1 122331623 122331843 -120332510 - MIR SINE MIR 0 262 12 405 0 0 0 chr1 122331905 122331950 -120332403 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2067 118 7 0 chr1 122333060 122333356 -120330997 - AluSx SINE Alu -14 298 1 2307 76 13 0 chr1 122333482 122333784 -120330569 - AluSq SINE Alu -4 309 4 463 263 103 27 chr1 122333856 122334052 -120330301 - MIR SINE MIR 0 262 57 882 276 144 15 chr1 122334222 122334929 -120329424 + L2 LINE L2 2471 3270 -2 261 154 0 39 chr1 122335082 122335134 -120329219 + MER103 DNA DNA 37 86 -80 629 301 58 0 chr1 122335195 122335368 -120328985 + MIR SINE MIR 5 187 -75 181 327 30 40 chr1 122335490 122335591 -120328762 + MIR3 SINE MIR 85 184 -24 2363 98 3 0 chr1 122338335 122338640 -120325713 + AluSx SINE Alu 2 307 -5 455 197 162 26 chr1 122338640 122338757 -120325596 + Tigger1 DNA MER2_type 2285 2417 -1 351 116 13 9 chr1 122339633 122339700 -120324653 - Alu SINE Alu -256 47 1 313 214 29 58 chr1 122340163 122340266 -120324087 + MIR SINE MIR 94 193 -69 252 177 32 32 chr1 122340774 122340836 -120323517 + L1ME LINE L1 5532 5593 -528 1312 200 79 15 chr1 122340950 122341154 -120323199 - AluJb SINE Alu 0 352 121 1483 133 40 4 chr1 122341154 122341380 -120322973 - AluSg SINE Alu -16 294 61 1312 200 79 15 chr1 122341380 122341510 -120322843 - AluJb SINE Alu -231 121 1 2322 95 7 0 chr1 122341592 122341888 -120322465 + AluSp SINE Alu 1 298 -15 2266 101 19 0 chr1 122342533 122342840 -120321513 + AluSp SINE Alu 1 313 0 513 278 46 0 chr1 122342895 122343046 -120321307 - L2 LINE L2 -1 3312 3155 300 281 44 59 chr1 122343094 122343229 -120321124 - L2 LINE L2 -1 3271 3139 756 241 84 5 chr1 122345058 122345249 -120319104 + MIR SINE MIR 51 256 -6 391 180 131 0 chr1 122345274 122345396 -120318957 - LTR37A LTR ERV1 0 426 289 5545 74 24 0 chr1 122345403 122346075 -120318278 + LTR8 LTR ERV1 1 688 -3 212 374 75 0 chr1 122346545 122346652 -120317701 - L2 LINE L2 -14 3258 3144 1301 226 46 59 chr1 122346823 122347014 -120317339 - MER21B LTR ERV1 -11 852 667 2209 110 0 7 chr1 122347014 122347315 -120317038 + AluSx SINE Alu 1 299 -13 1301 226 46 59 chr1 122347315 122347512 -120316841 - MER21B LTR ERV1 -196 667 469 2241 146 85 28 chr1 122347512 122347856 -120316497 + LTR54B LTR ERV1 1 379 -119 2432 90 0 10 chr1 122347856 122348168 -120316185 + AluSc SINE Alu 1 309 0 2241 146 85 28 chr1 122348168 122348282 -120316071 + LTR54B LTR ERV1 379 485 -13 366 355 40 7 chr1 122348451 122348603 -120315750 + LTR49-int LTR ERV1 2083 2239 -4092 * 572 214 21 14 chr1 122348576 122348716 -120315637 + LTR49-int LTR ERV1 329 469 -7068 2278 113 3 0 chr1 122348815 122349126 -120315227 + AluSp SINE Alu 1 312 -1 2219 105 10 0 chr1 122349354 122349658 -120314695 - AluSp SINE Alu -3 310 4 1622 203 14 7 chr1 122349722 122350012 -120314341 - AluJo SINE Alu -20 292 1 659 218 27 99 chr1 122350014 122350308 -120314045 + LTR49-int LTR ERV1 565 837 -6700 421 217 30 11 chr1 122350429 122350539 -120313814 + LTR49-int LTR ERV1 826 2645 -3686 889 168 81 34 chr1 122350722 122350931 -120313422 - AluJb SINE Alu -11 301 83 1774 154 0 39 chr1 122350932 122351269 -120313084 - AluJb SINE Alu 0 312 1 1678 124 41 8 chr1 122351309 122351551 -120312802 - AluSx SINE Alu -61 251 2 193 259 0 35 chr1 122351785 122351843 -120312510 - MIR SINE MIR -48 214 159 1985 136 3 10 chr1 122352182 122352483 -120311870 + AluJb SINE Alu 1 299 -13 712 212 88 24 chr1 122352502 122352672 -120311681 + AluJb SINE Alu 108 288 -24 899 143 95 0 chr1 122352966 122353113 -120311240 - AluSg/x SINE Alu -7 302 142 216 119 71 0 chr1 122353240 122353282 -120311071 + T-rich Low_complexity Low_complexity 4 48 0 421 113 32 0 chr1 122353287 122353349 -120311004 + MSTB LTR MaLR 363 426 0 2062 88 66 0 chr1 122354539 122354813 -120309540 - AluSp SINE Alu -17 296 5 895 86 9 0 chr1 122354823 122354939 -120309414 + AluY SINE Alu 173 289 -22 2338 91 0 7 chr1 122355061 122355370 -120308983 - AluSx SINE Alu -5 307 1 304 259 129 14 chr1 122356291 122356438 -120307915 - L1ME4a LINE L1 -78 6043 5880 451 262 143 34 chr1 122356453 122356690 -120307663 - L1ME4a LINE L1 -437 5684 5422 2357 81 7 13 chr1 122356695 122357004 -120307349 - AluY SINE Alu -4 307 1 2046 109 11 0 chr1 122357219 122357536 -120306817 - AluSq SINE Alu 0 320 1 1108 82 0 0 chr1 122357536 122357671 -120306682 - AluSq/x SINE Alu -177 135 1 434 252 163 67 chr1 122357779 122358092 -120306261 - L2 LINE L2 0 3313 2971 239 274 76 85 chr1 122358132 122358528 -120305825 - L1ME4a LINE L1 -1172 4974 4580 2341 56 0 14 chr1 122358528 122358856 -120305497 + AluY SINE Alu 1 324 0 239 274 76 85 chr1 122358856 122358904 -120305449 - L1ME4a LINE L1 -1566 4580 4533 1628 196 3 20 chr1 122359037 122359343 -120305010 - AluJo SINE Alu -11 301 1 526 264 173 32 chr1 122359476 122359696 -120304657 - MIR SINE MIR 0 262 12 441 0 0 0 chr1 122359758 122359807 -120304546 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 2169 118 7 0 chr1 122360917 122361213 -120303140 - AluSx SINE Alu -14 298 1 2422 76 13 0 chr1 122361339 122361641 -120302712 - AluSq SINE Alu -4 309 4 456 257 109 17 chr1 122361713 122361888 -120302465 - MIR SINE MIR 0 262 72 882 276 145 16 chr1 122362077 122362784 -120301569 + L2 LINE L2 2471 3270 -2 268 154 0 39 chr1 122362937 122362989 -120301364 + MER103 DNA DNA 37 86 -80 614 301 58 0 chr1 122363050 122363223 -120301130 + MIR SINE MIR 5 187 -75 181 327 30 40 chr1 122363345 122363446 -120300907 + MIR3 SINE MIR 85 184 -24 2363 98 3 0 chr1 122366190 122366495 -120297858 + AluSx SINE Alu 2 307 -5 455 197 162 26 chr1 122366495 122366612 -120297741 + Tigger1 DNA MER2_type 2285 2417 -1 351 116 13 9 chr1 122367488 122367555 -120296798 - Alu SINE Alu -255 47 1 313 214 29 58 chr1 122368018 122368121 -120296232 + MIR SINE MIR 94 193 -69 252 177 32 32 chr1 122368629 122368691 -120295662 + L1ME LINE L1 5532 5593 -528 1312 200 79 15 chr1 122368805 122368999 -120295354 - AluJb SINE Alu 0 342 121 1483 133 40 4 chr1 122368999 122369225 -120295128 - AluSg SINE Alu -16 294 61 1312 200 79 15 chr1 122369225 122369355 -120294998 - AluJb SINE Alu -221 121 1 2067 126 0 26 chr1 122369437 122369746 -120294607 + AluSx SINE Alu 1 301 -11 187 265 302 41 chr1 122369746 122369991 -120294362 - L2 LINE L2 -572 2742 2434 1310 188 132 117 chr1 122370227 122370553 -120293800 - L1MC5 LINE L1 -158 7803 7483 586 72 0 60 chr1 122370553 122370636 -120293717 + MADE1 DNA Mariner 3 80 0 1310 188 132 117 chr1 122370636 122371053 -120293300 - L1MC5 LINE L1 -478 7483 7049 51 17 0 0 chr1 122371856 122371914 -120292439 + AT_rich Low_complexity Low_complexity 1 58 0 1530 160 19 19 chr1 122371914 122372182 -120292171 - AluJo SINE Alu -41 271 4 1587 216 83 26 chr1 122372698 122373064 -120291289 + Charlie4a DNA MER1_type 14 414 -1547 829 113 15 53 chr1 122373064 122373197 -120291156 + FLAM_C SINE Alu 3 130 -3 1587 216 83 26 chr1 122373197 122373298 -120291055 + Charlie4a DNA MER1_type 414 508 0 1806 82 5 0 chr1 122373551 122373770 -120290583 + AluSp SINE Alu 1 220 -93 2088 65 0 84 chr1 122373770 122374076 -120290277 + AluY SINE Alu 25 306 -5 1983 117 17 0 chr1 122374099 122374389 -120289964 + AluSx SINE Alu 1 295 -17 22 56 0 0 chr1 122374415 122374451 -120289902 + AT_rich Low_complexity Low_complexity 1 36 0 247 163 0 0 chr1 122374615 122374658 -120289695 + U5 snRNA snRNA 1 43 -73 2162 97 0 7 chr1 122374683 122374962 -120289391 - AluSq SINE Alu -35 278 2 287 103 0 0 chr1 122374962 122375001 -120289352 + U5 snRNA snRNA 28 66 -50 1934 106 4 0 chr1 122376075 122376364 -120287989 + AluSx SINE Alu 29 318 0 512 116 0 14 chr1 122376538 122376607 -120287746 - AluS SINE Alu -244 69 2 370 272 191 81 chr1 122376676 122376888 -120287465 + L1ME4a LINE L1 5499 5686 -435 2203 104 7 0 chr1 122376888 122377185 -120287168 - AluSp SINE Alu -12 301 3 370 272 191 81 chr1 122377185 122377199 -120287154 + L1ME4a LINE L1 5686 5697 -424 2502 75 0 0 chr1 122377199 122377505 -120286848 - AluSx SINE Alu -6 306 1 370 272 191 81 chr1 122377505 122377603 -120286750 + L1ME4a LINE L1 5697 5783 -338 1950 149 13 0 chr1 122377603 122377904 -120286449 + AluSx SINE Alu 1 305 -7 2008 132 7 0 chr1 122377906 122378194 -120286159 + AluSx SINE Alu 1 290 -22 370 272 191 81 chr1 122378194 122378409 -120285944 + L1ME4a LINE L1 5783 6103 -18 1755 141 35 3 chr1 122378440 122378730 -120285623 - AluJb SINE Alu -13 299 1 348 227 0 23 chr1 122378858 122378946 -120285407 + L2 LINE L2 3146 3231 -82 2460 89 0 0 chr1 122379090 122379393 -120284960 - AluSx SINE Alu -9 303 1 598 165 113 9 chr1 122379538 122379653 -120284700 - AluSc SINE Alu -76 233 107 2286 102 0 3 chr1 122380627 122380921 -120283432 + AluSq SINE Alu 1 293 -20 2497 76 0 3 chr1 122381316 122381620 -120282733 + AluSp SINE Alu 1 303 -10 2161 113 46 3 chr1 122381692 122382018 -120282335 - L1PA16 LINE L1 -2 6164 5825 24 0 0 0 chr1 122382169 122382193 -120282160 + AT_rich Low_complexity Low_complexity 1 24 0 233 263 0 35 chr1 122382453 122382510 -120281843 + Charlie1 DNA MER1_type 1 55 -2706 691 129 57 29 chr1 122382512 122382558 -120281795 + Charlie1 DNA MER1_type 2225 2268 -493 1723 149 40 17 chr1 122382558 122382860 -120281493 + AluJb SINE Alu 1 309 -3 691 129 57 29 chr1 122382860 122382953 -120281400 + Charlie1 DNA MER1_type 2268 2368 -393 256 177 48 0 chr1 122383034 122383096 -120281257 - MER69 DNA AcHobo -104 2422 2358 1971 110 4 0 chr1 122383096 122383359 -120280994 + AluSx SINE Alu 2 265 -47 1891 143 0 33 chr1 122383365 122383694 -120280659 - L1M2 LINE L1 -517 5795 5478 2272 89 3 19 chr1 122383709 122384022 -120280331 + AluSg SINE Alu 1 308 -2 438 305 62 18 chr1 122386052 122386278 -120278075 + Charlie2b DNA MER1_type 74 309 -2473 328 222 46 37 chr1 122386279 122386387 -120277966 + Charlie2b DNA MER1_type 556 664 -2118 1899 118 96 0 chr1 122386395 122386675 -120277678 - AluSx SINE Alu -5 307 1 444 177 73 0 chr1 122386725 122386821 -120277532 + Charlie2a DNA MER1_type 1465 1567 -1295 424 269 21 42 chr1 122386904 122387097 -120277256 + L1MEc LINE L1 1139 1327 -5069 415 284 88 83 chr1 122387181 122387483 -120276870 - L1MEd LINE L1 -4876 1243 935 2110 112 25 0 chr1 122387483 122387768 -120276585 - AluSx SINE Alu -20 292 1 415 284 88 83 chr1 122387768 122388054 -120276299 - L1MEd LINE L1 -5184 935 652 213 238 0 32 chr1 122388165 122388228 -120276125 + CT-rich Low_complexity Low_complexity 2 62 0 301 127 70 28 chr1 122388349 122388420 -120275933 - L1MA10 LINE L1 -3 6331 6258 595 211 211 6 chr1 122388360 122388531 -120275822 - L1ME1 LINE L1 -5 6161 5956 1270 160 50 14 chr1 122388531 122388750 -120275603 - MER46A DNA MER2_type -9 227 1 2319 208 121 10 chr1 122388752 122389409 -120274944 - L1ME1 LINE L1 -216 5950 5221 2087 66 56 14 chr1 122389427 122389713 -120274640 - AluSg SINE Alu -12 298 1 989 214 118 55 chr1 122389767 122390088 -120274265 - L1ME1 LINE L1 -1601 4545 4246 2030 96 31 7 chr1 122390088 122390379 -120273974 - AluSg SINE Alu -12 298 1 1310 213 60 8 chr1 122390379 122390647 -120273706 - AluJo SINE Alu -30 282 1 989 214 118 55 chr1 122390647 122390764 -120273589 - L1ME1 LINE L1 -1899 4247 4078 2146 118 3 0 chr1 122391231 122391536 -120272817 - AluSx SINE Alu -6 306 1 2118 105 20 0 chr1 122391881 122392175 -120272178 + AluSx SINE Alu 1 300 -12 2009 186 60 48 chr1 122392483 122392980 -120271373 - MER21B LTR ERV1 -2 903 408 1474 197 3 7 chr1 122393052 122393336 -120271017 - AluJb SINE Alu -29 283 1 603 180 41 33 chr1 122393349 122393471 -120270882 - FLAM_A SINE Alu -10 123 1 187 337 119 20 chr1 122394496 122394597 -120269756 - L2 LINE L2 -10 3262 3152 871 162 81 33 chr1 122395760 122395970 -120268383 - AluJb SINE Alu -10 302 83 1669 154 0 39 chr1 122395971 122396308 -120268045 - AluJb SINE Alu 0 312 1 1772 116 0 0 chr1 122396348 122396599 -120267754 - AluSx SINE Alu -61 251 1 427 177 73 0 chr1 122396649 122396745 -120267608 + Charlie2a DNA MER1_type 1465 1567 -1295 417 269 21 42 chr1 122396828 122397021 -120267332 + L1MEc LINE L1 1139 1327 -5069 1023 241 28 52 chr1 122397231 122397331 -120267022 - MER21B LTR ERV1 -111 752 651 2130 110 0 3 chr1 122397331 122397631 -120266722 + AluSx SINE Alu 1 299 -13 1023 241 28 52 chr1 122397631 122397821 -120266532 - MER21B LTR ERV1 -212 651 469 2204 148 85 28 chr1 122397821 122398165 -120266188 + LTR54B LTR ERV1 1 379 -119 2313 90 0 10 chr1 122398165 122398477 -120265876 + AluSc SINE Alu 1 309 0 2204 148 85 28 chr1 122398477 122398591 -120265762 + LTR54B LTR ERV1 379 485 -13 361 355 40 7 chr1 122398760 122398912 -120265441 + LTR49-int LTR ERV1 2083 2239 -4092 * 580 235 20 13 chr1 122398885 122399038 -120265315 + LTR49-int LTR ERV1 329 482 -7055 957 82 0 0 chr1 122399159 122399281 -120265072 - AluSp SINE Alu -188 125 4 1528 203 14 7 chr1 122399345 122399635 -120264718 - AluJo SINE Alu -20 292 1 643 218 27 99 chr1 122399637 122399931 -120264422 + LTR49-int LTR ERV1 565 837 -6700 441 242 21 13 chr1 122400041 122400164 -120264189 + LTR49-int LTR ERV1 2551 2723 -3223 21 36 0 0 chr1 122400256 122400284 -120264069 + GC_rich Low_complexity Low_complexity 1 28 0 2555 90 38 90 chr1 122400335 122400837 -120263516 + SVA Other Other 393 868 -518 305 148 0 0 chr1 122401013 122401067 -120263286 - L1 LINE L1 -1187 4959 4906 1923 109 39 3 chr1 122401086 122401369 -120262984 - AluSg SINE Alu -17 293 1 2013 122 3 0 chr1 122401371 122401666 -120262687 - AluSx SINE Alu -16 296 1 216 196 0 22 chr1 122401764 122401810 -120262543 + MIR SINE MIR 213 257 -5 186 298 0 0 chr1 122401826 122401873 -120262480 + L2 LINE L2 3181 3227 -86 424 284 119 26 chr1 122401981 122402175 -120262178 + MIR SINE MIR 19 230 -32 359 293 113 5 chr1 122402346 122402535 -120261818 - MIR SINE MIR -35 227 24 2144 57 7 7 chr1 122403590 122403922 -120260431 - AluSg1 SINE Alu 0 332 1 2092 121 0 3 chr1 122403969 122404283 -120260070 - AluSq SINE Alu 0 313 1 348 225 19 76 chr1 122404450 122404549 -120259804 - MER39 LTR ERV1 -360 347 244 1444 231 87 71 chr1 122404549 122404828 -120259525 + LTR26B LTR ERV1 3 295 -236 2168 96 3 0 chr1 122404828 122405120 -120259233 + AluSg SINE Alu 1 293 -17 1444 231 87 71 chr1 122405120 122405360 -120258993 + LTR26B LTR ERV1 295 530 -1 348 225 19 76 chr1 122405360 122405401 -120258952 - MER39 LTR ERV1 -463 244 202 2171 92 7 0 chr1 122405401 122405694 -120258659 - AluSp SINE Alu -18 295 1 348 225 19 76 chr1 122405694 122405751 -120258602 - MER39 LTR ERV1 -505 202 2 536 220 61 23 chr1 122405791 122405923 -120258430 - MLT1H1 LTR MaLR -418 137 1 225 0 0 0 chr1 122406091 122406116 -120258237 + (TC)n Simple_repeat Simple_repeat 2 26 0 2428 72 0 0 chr1 122407217 122407522 -120256831 + AluY SINE Alu 1 305 -6 2497 55 0 0 chr1 122407535 122407846 -120256507 + AluY SINE Alu 1 311 0 1952 94 36 32 chr1 122408020 122408328 -120256025 + AluSx SINE Alu 1 309 -3 2109 105 0 0 chr1 122408338 122408647 -120255706 + AluSx SINE Alu 1 309 0 2254 69 6 41 chr1 122409081 122409401 -120254952 + AluSc SINE Alu 1 309 0 336 183 183 8 chr1 122409686 122409812 -120254541 + Charlie2a DNA MER1_type 1557 1704 -1158 335 162 256 17 chr1 122409782 122409899 -120254454 + Charlie2a DNA MER1_type 2716 2860 -2 * 2034 126 3 3 chr1 122409982 122410284 -120254069 + AluSx SINE Alu 1 302 -10 1954 88 0 7 chr1 122410422 122410695 -120253658 + AluSc SINE Alu 2 272 -37 274 274 24 12 chr1 122410803 122410887 -120253466 - LTR2 LTR ERV1 -324 125 41 824 157 46 42 chr1 122410963 122411179 -120253174 + MER39 LTR ERV1 450 666 -41 790 234 11 6 chr1 122411219 122411394 -120252959 + MLT1F LTR MaLR 132 307 -235 33 0 0 0 chr1 122411559 122411592 -120252761 + AT_rich Low_complexity Low_complexity 1 33 0 2075 99 0 14 chr1 122411595 122411888 -120252465 + AluSg SINE Alu 1 289 -21 423 0 0 0 chr1 122411897 122411944 -120252409 + (CA)n Simple_repeat Simple_repeat 2 48 0 2244 100 0 0 chr1 122412157 122412457 -120251896 + AluSg SINE Alu 1 300 -10 1942 133 27 0 chr1 122412709 122413010 -120251343 + AluSx SINE Alu 1 309 -3 1717 198 31 83 chr1 122413079 122413560 -120250793 - MER39 LTR ERV1 -2 705 250 2678 158 29 57 chr1 122413705 122414249 -120250104 - LTR9 LTR ERV1 -83 529 1 1002 157 182 0 chr1 122414249 122414485 -120249868 + L1MB5 LINE L1 5635 5913 -261 3972 86 22 2 chr1 122414497 122415035 -120249318 + MER41A LTR ERV1 6 554 0 557 149 32 0 chr1 122415035 122415129 -120249224 + L1MB5 LINE L1 5914 6010 -164 2708 88 311 116 chr1 122415132 122415968 -120248385 - pTR5 LTR ERV1 0 2438 1287 2065 95 0 0 chr1 122416069 122416342 -120248011 - AluSp SINE Alu -40 273 1 2198 100 0 7 chr1 122416352 122416651 -120247702 - AluSg SINE Alu -13 297 1 278 28 0 0 chr1 122416651 122416687 -120247666 - L1MB8 LINE L1 -53 6125 6090 4482 181 24 13 chr1 122416703 122417491 -120246862 - MER21B LTR ERV1 -66 797 1 780 82 18 0 chr1 122417516 122417626 -120246727 + MER41B LTR ERV1 443 554 -81 470 143 0 0 chr1 122417660 122417737 -120246616 - L1MB5 LINE L1 -91 6083 6007 2433 155 21 41 chr1 122417737 122418271 -120246082 + pTR5 LTR ERV1 743 1265 -1173 385 273 296 41 chr1 122419635 122419654 -120244699 - L3 LINE CR1 0 1577 1564 2083 125 0 0 chr1 122419654 122419950 -120244403 + AluSx SINE Alu 1 296 -16 385 273 296 41 chr1 122419950 122420197 -120244156 - L3 LINE CR1 -13 1564 1243 320 226 137 10 chr1 122420264 122420366 -120243987 + L1ME4a LINE L1 5986 6100 -21 2194 100 0 0 chr1 122420378 122420679 -120243674 + AluSg SINE Alu 1 301 -9 1217 116 18 44 chr1 122420679 122420787 -120243566 + Tigger2 DNA MER2_type 162 262 -2456 2305 86 7 3 chr1 122420787 122421091 -120243262 + AluSx SINE Alu 1 305 -7 1217 116 18 44 chr1 122421091 122421207 -120243146 + Tigger2 DNA MER2_type 262 380 -2338 1533 91 0 52 chr1 122421207 122421438 -120242915 + AluSx SINE Alu 1 219 -93 761 108 0 9 chr1 122421438 122421549 -120242804 + AluSp/q SINE Alu 188 297 -16 11490 100 18 30 chr1 122421549 122423254 -120241099 + Tigger2 DNA MER2_type 534 2217 -501 924 216 122 16 chr1 122423254 122423351 -120241002 - MLT1A1 LTR MaLR -83 282 197 2048 103 0 7 chr1 122423351 122423641 -120240712 - AluSx SINE Alu -24 288 1 924 216 122 16 chr1 122423641 122423798 -120240555 - MLT1A1 LTR MaLR -168 197 1 579 251 129 23 chr1 122424346 122424517 -120239836 + MER5A DNA MER1_type 1 189 0 194 91 30 0 chr1 122424541 122424574 -120239779 + (CA)n Simple_repeat Simple_repeat 1 34 0 2186 113 0 0 chr1 122425254 122425564 -120238789 + AluSq SINE Alu 1 310 -3 204 67 0 0 chr1 122425643 122425673 -120238680 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 216 222 0 56 chr1 122426081 122426153 -120238200 + G-rich Low_complexity Low_complexity 3 70 0 2049 82 0 11 chr1 122426205 122426511 -120237842 + AluSx SINE Alu 7 309 0 890 199 30 18 chr1 122426954 122427120 -120237233 - MER45A DNA AcHobo -10 168 1 2104 119 0 3 chr1 122427543 122427846 -120236507 + AluSx SINE Alu 1 302 -10 2134 107 3 0 chr1 122427911 122428210 -120236143 + AluY SINE Alu 1 300 -11 2038 111 0 46 chr1 122428213 122428538 -120235815 + AluSx SINE Alu 1 310 -2 653 263 50 0 chr1 122429592 122429771 -120234582 - MIR SINE MIR 0 262 75 3646 120 30 35 chr1 122429833 122430377 -120233976 + L1PB4 LINE L1 5528 6070 -86 2294 82 7 0 chr1 122430377 122430680 -120233673 + AluSp SINE Alu 1 305 -8 3646 120 30 35 chr1 122430680 122430767 -120233586 + L1PB4 LINE L1 6070 6156 0 2128 89 4 0 chr1 122430826 122431131 -120233222 + AluSc SINE Alu 1 306 0 430 283 119 40 chr1 122431138 122431315 -120233038 - MIR SINE MIR -70 192 2 367 292 248 5 chr1 122431368 122431570 -120232783 + L3 LINE CR1 1178 1428 -149 237 219 195 12 chr1 122431578 122431660 -120232693 - L2 LINE L2 -28 3285 3189 2161 103 13 7 chr1 122431660 122431970 -120232383 - AluSp SINE Alu -1 312 1 2112 105 3 3 chr1 122432013 122432307 -120232046 + AluSg SINE Alu 1 294 -16 1139 123 6 0 chr1 122432307 122432470 -120231883 + AluSg/x SINE Alu 132 295 -15 442 91 0 0 chr1 122432470 122432525 -120231828 - Tigger2 DNA MER2_type -2663 55 1 * 810 205 72 0 chr1 122432525 122432689 -120231664 - MER34C LTR ERV1 -409 176 1 788 244 124 16 chr1 122433552 122433802 -120230551 + Charlie2 DNA MER1_type 37 313 -2549 2230 89 3 0 chr1 122433802 122434095 -120230258 - AluSp SINE Alu -19 294 1 678 149 8 45 chr1 122434210 122434344 -120230009 + FRAM SINE Alu 1 40 0 798 213 64 36 chr1 122434350 122434431 -120229922 + Charlie2 DNA MER1_type 2604 2681 -181 1739 103 137 0 chr1 122434431 122434693 -120229660 + AluSx SINE Alu 1 298 -4 798 213 64 36 chr1 122434693 122434860 -120229493 + Charlie2 DNA MER1_type 2681 2859 -3 294 227 0 67 chr1 122435043 122435118 -120229235 + MIR SINE MIR 60 129 -133 1036 154 23 11 chr1 122435147 122435322 -120229031 - AluSg1 SINE Alu -132 177 1 24 77 0 0 chr1 122435356 122435408 -120228945 + AT_rich Low_complexity Low_complexity 1 52 0 1621 100 17 0 chr1 122435555 122435786 -120228567 - AluSg SINE Alu -75 235 1 1842 135 7 0 chr1 122436330 122436646 -120227707 - AluSx SINE Alu 0 318 1 2184 116 3 0 chr1 122436714 122437017 -120227336 - AluSp SINE Alu -9 304 1 1386 97 14 37 chr1 122437285 122437502 -120226851 + AluSg/x SINE Alu 84 295 -15 2041 128 0 10 chr1 122437887 122438193 -120226160 - AluSx SINE Alu -9 303 1 1913 117 7 17 chr1 122438223 122438522 -120225831 - AluSx SINE Alu -16 296 1 2444 55 0 7 chr1 122438655 122438962 -120225391 - AluY SINE Alu -6 305 1 192 246 82 0 chr1 122439019 122439080 -120225273 + L2 LINE L2 3186 3251 -62 2030 109 3 0 chr1 122441043 122441328 -120223025 + AluSp SINE Alu 14 299 -14 1911 140 3 23 chr1 122441484 122441784 -120222569 + AluSx SINE Alu 1 294 -18 458 323 39 7 chr1 122442271 122442426 -120221927 + MIR SINE MIR 88 247 -15 4471 156 57 52 chr1 122442445 122442867 -120221486 - MER21B LTR ERV1 0 863 444 1987 129 0 3 chr1 122442867 122443162 -120221191 + AluSx SINE Alu 3 296 -16 4471 156 57 52 chr1 122443162 122443598 -120220755 - MER21B LTR ERV1 -419 444 1 181 244 49 0 chr1 122443605 122443646 -120220707 - MIR SINE MIR -14 248 206 329 278 122 0 chr1 122443650 122443740 -120220613 - MIR SINE MIR -161 101 1 374 299 51 35 chr1 122443850 122443999 -120220354 - MARNA DNA Mariner -164 422 277 887 189 163 71 chr1 122443999 122444214 -120220139 - MSTC LTR MaLR 0 428 234 1955 101 3 80 chr1 122444214 122444390 -120219963 - AluSg SINE Alu 0 310 122 2278 84 7 0 chr1 122444390 122444698 -120219655 - AluSx SINE Alu -2 310 1 1955 101 3 80 chr1 122444698 122444777 -120219576 - AluSg SINE Alu -188 122 85 2382 59 16 7 chr1 122444777 122445083 -120219270 - AluY SINE Alu -2 309 1 1955 101 3 80 chr1 122445083 122445162 -120219191 - AluSg SINE Alu -225 85 1 887 189 163 71 chr1 122445162 122445338 -120219015 - MSTC LTR MaLR -194 234 1 374 299 51 35 chr1 122445338 122445385 -120218968 - MARNA DNA Mariner -309 277 223 753 324 204 12 chr1 122445469 122446068 -120218285 + L3 LINE CR1 470 1183 -394 505 198 132 9 chr1 122446127 122446233 -120218120 + FLAM_C SINE Alu 2 120 -23 2176 63 0 0 chr1 122446272 122446542 -120217811 - AluSg1 SINE Alu -14 295 26 290 274 12 36 chr1 122446577 122446661 -120217692 + MER81 DNA DNA 30 111 -3 1811 146 7 0 chr1 122446747 122447057 -120217296 - AluSg SINE Alu 0 312 1 2041 85 7 33 chr1 122447256 122447562 -120216791 - AluSp SINE Alu -13 300 3 2092 110 10 0 chr1 122448189 122448489 -120215864 + AluSg SINE Alu 1 303 -7 2113 115 3 3 chr1 122448489 122448801 -120215552 + AluSp SINE Alu 1 312 -1 2140 93 10 22 chr1 122448891 122449204 -120215149 + AluSg SINE Alu 1 309 -1 2112 107 0 0 chr1 122449573 122449864 -120214489 + AluSx SINE Alu 1 291 -21 2240 60 7 0 chr1 122449959 122450265 -120214088 - AluY SINE Alu 0 308 1 2138 89 0 0 chr1 122450346 122450626 -120213727 + AluSg SINE Alu 18 297 -13 2298 88 3 0 chr1 122452038 122452344 -120212009 - AluSp SINE Alu -6 307 1 2241 77 0 0 chr1 122452401 122452688 -120211665 + AluSq SINE Alu 16 302 -11 1729 132 89 0 chr1 122452889 122453169 -120211184 - AluSx SINE Alu -6 306 2 1985 104 0 41 chr1 122453223 122453539 -120210814 + AluSq SINE Alu 1 303 -10 849 222 167 28 chr1 122453539 122453791 -120210562 + L1MC4 LINE L1 6534 6820 -1222 2266 90 3 3 chr1 122453791 122454101 -120210252 - AluSq SINE Alu -3 310 1 2106 72 7 33 chr1 122454101 122454405 -120209948 - AluSx SINE Alu -16 296 1 2942 161 78 43 chr1 122454406 122454480 -120209873 + L1MC4 LINE L1 7250 7320 -722 2158 104 3 13 chr1 122454480 122454788 -120209565 + AluSg SINE Alu 1 305 -5 2942 161 78 43 chr1 122454788 122455262 -120209091 + L1MC4 LINE L1 7320 7827 -215 2229 94 7 0 chr1 122455262 122455570 -120208783 + AluSg SINE Alu 1 310 0 2942 161 78 43 chr1 122455570 122455671 -120208682 + L1MC4 LINE L1 7827 7923 -119 385 273 296 41 chr1 122456946 122456965 -120207388 - L3 LINE CR1 0 1577 1564 2083 125 0 0 chr1 122456965 122457261 -120207092 + AluSx SINE Alu 1 296 -16 385 273 296 41 chr1 122457261 122457508 -120206845 - L3 LINE CR1 -13 1564 1243 323 236 31 71 chr1 122457575 122457689 -120206664 + L1ME4a LINE L1 5986 6096 -25 2078 127 0 0 chr1 122457689 122457997 -120206356 + AluSg SINE Alu 1 308 -2 323 236 31 71 chr1 122457997 122458009 -120206344 + L1ME4a LINE L1 6096 6107 -14 767 185 0 20 chr1 122458065 122458225 -120206128 - MIR SINE MIR -62 146 34 1533 178 45 3 chr1 122458235 122458521 -120205832 - AluJo SINE Alu -14 298 1 584 279 41 20 chr1 122458655 122458852 -120205501 - L3 LINE CR1 -479 1098 898 608 258 38 125 chr1 122459041 122459357 -120204996 - L1ME3 LINE L1 -260 5902 5617 2192 88 0 0 chr1 122459357 122459706 -120204647 - AluSx SINE Alu 0 349 1 608 258 38 125 chr1 122459706 122459852 -120204501 - L1ME3 LINE L1 -545 5617 5460 334 339 8 8 chr1 122459871 122459989 -120204364 + L1 LINE L1 3973 4090 -2056 2366 70 0 10 chr1 122459999 122460300 -120204053 + AluY SINE Alu 1 298 -13 2069 114 3 0 chr1 122460365 122460654 -120203699 + AluSq SINE Alu 1 290 -23 1273 243 53 44 chr1 122460670 122461081 -120203272 - L1ME3A LINE L1 -21 6149 5735 619 295 79 24 chr1 122461082 122461336 -120203017 - L3 LINE CR1 -823 754 487 1473 193 0 4 chr1 122461336 122461601 -120202752 + AluJo SINE Alu 38 301 -11 2096 115 0 16 chr1 122461603 122461907 -120202446 + AluSg SINE Alu 1 299 -11 2574 52 0 0 chr1 122461907 122462216 -120202137 + AluY SINE Alu 1 309 -2 424 296 341 8 chr1 122462221 122462593 -120201760 - L2 LINE L2 -13 3300 2805 820 228 12 0 chr1 122462625 122462787 -120201566 - FAM SINE Alu -11 164 1 623 335 106 15 chr1 122462813 122463153 -120201200 + LTR16A LTR ERVL 1 371 -79 2206 83 3 29 chr1 122463234 122463546 -120200807 - AluSp SINE Alu -9 304 1 646 243 148 5 chr1 122463546 122463748 -120200605 - L2 LINE L2 -563 2751 2521 2313 51 3 7 chr1 122463758 122464051 -120200302 + AluY SINE Alu 7 298 -13 568 245 98 66 chr1 122464231 122464355 -120199998 + MER34B LTR ERV1 220 338 -227 2122 106 10 0 chr1 122464355 122464658 -120199695 + AluSx SINE Alu 1 306 -6 568 245 98 66 chr1 122464658 122464868 -120199485 + MER34B LTR ERV1 338 565 0 180 345 0 0 chr1 122464878 122464933 -120199420 - L3 LINE CR1 -1164 413 359 772 333 67 25 chr1 122464965 122465410 -120198943 + L2 LINE L2 2849 3312 -1 258 326 121 7 chr1 122465409 122465550 -120198803 - L3 LINE CR1 -1226 351 195 * 243 0 0 0 chr1 122465561 122465588 -120198765 + (T)n Simple_repeat Simple_repeat 1 27 0 2033 90 0 4 chr1 122465636 122465914 -120198439 - AluSg SINE Alu -33 277 1 258 32 0 0 chr1 122465953 122465984 -120198369 + (TA)n Simple_repeat Simple_repeat 2 32 0 2125 115 3 10 chr1 122465984 122466296 -120198057 - AluSq SINE Alu -3 310 1 32 47 0 16 chr1 122466572 122466614 -120197739 + AT_rich Low_complexity Low_complexity 1 43 -20 563 144 216 18 chr1 122466614 122466725 -120197628 - FLAM_C SINE Alu 0 133 1 32 47 0 16 chr1 122466725 122466746 -120197607 + AT_rich Low_complexity Low_complexity 43 63 0 1372 157 157 0 chr1 122466788 122467055 -120197298 - AluJb SINE Alu -3 309 1 2247 95 7 0 chr1 122467170 122467474 -120196879 + AluSq SINE Alu 1 306 -7 2017 115 7 0 chr1 122468103 122468399 -120195954 - AluSp SINE Alu -15 298 1 1522 97 0 5 chr1 122468444 122468651 -120195702 + AluSg/x SINE Alu 85 290 -20 1742 128 4 8 chr1 122468777 122468867 -120195486 + AluSq SINE Alu 46 135 -178 2197 96 0 0 chr1 122468867 122469160 -120195193 + AluSp SINE Alu 1 293 -20 1742 128 4 8 chr1 122469160 122469335 -120195018 + AluSq SINE Alu 135 310 -3 2204 112 0 0 chr1 122469433 122469737 -120194616 + AluSx SINE Alu 1 304 -8 323 248 7 118 chr1 122470457 122470610 -120193743 + MIR3 SINE MIR 60 195 -13 * 390 301 137 0 chr1 122470584 122470730 -120193623 + MIR SINE MIR 53 218 -44 2132 98 0 23 chr1 122471371 122471676 -120192677 - AluSx SINE Alu -14 298 1 317 255 47 60 chr1 122471692 122471826 -120192527 + MIR3 SINE MIR 50 188 -20 2326 73 3 0 chr1 122472571 122472871 -120191482 + AluSc SINE Alu 1 301 -8 704 191 0 8 chr1 122473107 122473257 -120191096 - FLAM_C SINE Alu 0 149 1 216 0 0 0 chr1 122473484 122473508 -120190845 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2000 108 3 17 chr1 122473670 122473967 -120190386 + AluSx SINE Alu 1 293 -19 586 259 107 0 chr1 122474874 122475068 -120189285 - MIR SINE MIR -11 251 38 2100 111 0 3 chr1 122475087 122475384 -120188969 + AluSx SINE Alu 1 296 -16 2293 88 0 3 chr1 122475934 122476239 -120188114 - AluSq SINE Alu -9 304 1 2025 128 3 0 chr1 122476334 122476638 -120187715 + AluSg SINE Alu 6 310 0 2099 118 0 0 chr1 122476642 122476938 -120187415 + AluSx SINE Alu 1 296 -16 1441 87 5 5 chr1 122477278 122477474 -120186879 - AluSg/x SINE Alu -9 303 108 2339 91 0 0 chr1 122477474 122477781 -120186572 - AluSc SINE Alu -2 307 1 2278 64 4 0 chr1 122477860 122478179 -120186174 + AluSx SINE Alu 1 320 0 29 84 0 0 chr1 122478203 122478274 -120186079 + AT_rich Low_complexity Low_complexity 1 71 0 1048 154 23 11 chr1 122478306 122478481 -120185872 + AluSg SINE Alu 1 177 -133 294 227 0 67 chr1 122478510 122478585 -120185768 - MIR SINE MIR -133 129 60 798 213 64 36 chr1 122478768 122478935 -120185418 - Charlie2 DNA MER1_type -3 2859 2681 1739 103 137 0 chr1 122478935 122479197 -120185156 - AluSx SINE Alu -4 298 1 798 213 64 36 chr1 122479197 122479278 -120185075 - Charlie2 DNA MER1_type -181 2681 2604 678 149 8 45 chr1 122479284 122479418 -120184935 - FRAM SINE Alu 0 40 1 2230 89 3 0 chr1 122479533 122479826 -120184527 + AluSp SINE Alu 1 294 -19 788 244 124 16 chr1 122479826 122480076 -120184277 - Charlie2 DNA MER1_type -2469 313 37 810 205 72 0 chr1 122480939 122481103 -120183250 + MER34C LTR ERV1 1 176 -409 442 91 0 0 chr1 122481103 122481158 -120183195 - MER8 DNA MER2_type 0 239 185 1139 123 6 0 chr1 122481158 122481321 -120183032 - AluSg/x SINE Alu -15 297 134 2204 88 3 3 chr1 122481321 122481615 -120182738 - AluSg SINE Alu -16 294 1 1246 107 16 62 chr1 122481629 122481646 -120182707 + Tigger2 DNA MER2_type 149 165 -2553 2277 68 3 23 chr1 122481646 122481954 -120182399 + AluY SINE Alu 1 302 -9 1246 107 16 62 chr1 122481954 122482062 -120182291 + Tigger2 DNA MER2_type 165 260 -2458 2305 86 7 3 chr1 122482062 122482366 -120181987 + AluSx SINE Alu 1 305 -7 1246 107 16 62 chr1 122482366 122482482 -120181871 + Tigger2 DNA MER2_type 260 380 -2338 1533 91 0 52 chr1 122482482 122482713 -120181640 + AluSx SINE Alu 1 219 -93 761 108 0 9 chr1 122482713 122482824 -120181529 + AluSp/q SINE Alu 188 297 -16 11490 100 18 30 chr1 122482824 122484529 -120179824 + Tigger2 DNA MER2_type 534 2217 -501 924 216 122 16 chr1 122484529 122484626 -120179727 - MLT1A1 LTR MaLR -83 282 197 2048 103 0 7 chr1 122484626 122484916 -120179437 - AluSx SINE Alu -24 288 1 924 216 122 16 chr1 122484916 122485073 -120179280 - MLT1A1 LTR MaLR -168 197 1 579 251 129 23 chr1 122485621 122485792 -120178561 + MER5A DNA MER1_type 1 189 0 194 91 30 0 chr1 122485816 122485849 -120178504 + (CA)n Simple_repeat Simple_repeat 1 34 0 2186 113 0 0 chr1 122486529 122486839 -120177514 + AluSq SINE Alu 1 310 -3 204 67 0 0 chr1 122486918 122486948 -120177405 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 216 222 0 56 chr1 122487356 122487428 -120176925 + G-rich Low_complexity Low_complexity 3 70 0 2049 82 0 11 chr1 122487480 122487786 -120176567 + AluSx SINE Alu 7 309 0 890 199 30 18 chr1 122488229 122488395 -120175958 - MER45A DNA AcHobo -10 168 1 2104 119 0 3 chr1 122488819 122489122 -120175231 + AluSx SINE Alu 1 302 -10 2134 107 3 0 chr1 122489187 122489486 -120174867 + AluY SINE Alu 1 300 -11 2038 111 0 46 chr1 122489489 122489814 -120174539 + AluSx SINE Alu 1 310 -2 653 263 50 0 chr1 122490868 122491047 -120173306 - MIR SINE MIR 0 262 75 3646 120 30 35 chr1 122491109 122491653 -120172700 + L1PB4 LINE L1 5528 6070 -86 2294 82 7 0 chr1 122491653 122491956 -120172397 + AluSp SINE Alu 1 305 -8 3646 120 30 35 chr1 122491956 122492043 -120172310 + L1PB4 LINE L1 6070 6156 0 2128 89 4 0 chr1 122492102 122492407 -120171946 + AluSc SINE Alu 1 306 0 430 283 119 40 chr1 122492414 122492591 -120171762 - MIR SINE MIR -70 192 2 367 292 248 5 chr1 122492644 122492846 -120171507 + L3 LINE CR1 1178 1428 -149 259 185 210 12 chr1 122492854 122492935 -120171418 - L2 LINE L2 -28 3285 3189 2372 77 10 6 chr1 122492935 122493246 -120171107 - AluSp SINE Alu -1 312 1 853 135 0 8 chr1 122493406 122493539 -120170814 - FLAM_C SINE Alu 0 133 2 1669 205 29 55 chr1 122493725 122494107 -120170246 + L1ME1 LINE L1 5665 6191 -143 2276 78 7 0 chr1 122494107 122494403 -120169950 - AluSq SINE Alu -13 300 3 1669 205 29 55 chr1 122494403 122494544 -120169809 + L1ME1 LINE L1 6191 6334 0 2135 102 7 10 chr1 122494673 122494978 -120169375 + AluSx SINE Alu 1 304 -8 2004 128 10 7 chr1 122494982 122495288 -120169065 + AluSg SINE Alu 1 307 -3 1964 117 7 0 chr1 122495303 122495586 -120168767 + AluSx SINE Alu 11 295 -17 2581 33 3 0 chr1 122495588 122495895 -120168458 + AluY SINE Alu 1 308 -3 550 250 47 76 chr1 122496022 122496107 -120168246 - MIR SINE MIR -32 230 144 2188 81 3 0 chr1 122496107 122496391 -120167962 - AluSp SINE Alu -28 285 1 550 250 47 76 chr1 122496391 122496541 -120167812 - MIR SINE MIR -118 144 2 392 318 96 62 chr1 122496546 122496675 -120167678 - L2 LINE L2 -61 3211 3088 1768 134 0 66 chr1 122496675 122496995 -120167358 + AluJb SINE Alu 1 299 -13 392 318 96 62 chr1 122496995 122497249 -120167104 - L2 LINE L2 -184 3088 2815 270 300 146 27 chr1 122497604 122497984 -120166369 - MLT1K LTR MaLR -11 577 121 384 242 105 0 chr1 122498186 122498281 -120166072 - MER5B DNA MER1_type -73 105 1 388 310 107 25 chr1 122498387 122498495 -120165858 - MIR SINE MIR 0 262 164 2119 98 3 0 chr1 122498495 122498782 -120165571 - AluSg SINE Alu -22 288 1 388 310 107 25 chr1 122498782 122498915 -120165438 - MIR SINE MIR -98 164 1 228 239 97 62 chr1 122499279 122499392 -120164961 + MIR SINE MIR 76 192 -70 1161 182 3 141 chr1 122499789 122500136 -120164217 + AluSx SINE Alu 1 299 -13 655 200 2 10 chr1 122501031 122501172 -120163181 + MIR SINE MIR 36 174 -62 2059 72 69 7 chr1 122501266 122501557 -120162796 + AluY SINE Alu 1 309 -2 676 237 133 47 chr1 122501557 122501612 -120162741 + MIR SINE MIR 22 71 -191 2113 110 3 3 chr1 122501612 122501913 -120162440 - AluSg SINE Alu -9 301 1 676 237 133 47 chr1 122501913 122502068 -120162285 + MIR SINE MIR 71 250 -12 205 302 0 0 chr1 122502236 122502289 -120162064 + CT-rich Low_complexity Low_complexity 6 58 0 869 223 13 0 chr1 122503399 122503556 -120160797 + MER5A DNA MER1_type 3 161 -28 1723 147 4 4 chr1 122503563 122503859 -120160494 - AluSx SINE Alu 0 307 12 298 170 0 0 chr1 122503879 122503926 -120160427 + MER5A DNA MER1_type 138 184 -5 2010 129 7 10 chr1 122503991 122504301 -120160052 - AluSq SINE Alu -4 309 1 2164 71 0 11 chr1 122504344 122504649 -120159704 + AluSc SINE Alu 1 302 0 2245 94 3 0 chr1 122504876 122505185 -120159168 - AluSp SINE Alu -3 310 1 2203 94 3 0 chr1 122505313 122505612 -120158741 - AluSg SINE Alu -10 300 1 288 152 6 262 chr1 122505677 122505755 -120158598 - L1M4 LINE L1 -1537 4609 4513 746 223 0 0 chr1 122505755 122505885 -120158468 - FLAM_A SINE Alu -2 131 2 288 152 6 262 chr1 122505885 122505906 -120158447 - L1M4 LINE L1 -1633 4513 4564 1713 185 0 0 chr1 122505906 122506204 -120158149 - AluSx SINE Alu -12 300 3 288 152 6 262 chr1 122506204 122506267 -120158086 - L1M4 LINE L1 -1581 4565 4488 292 37 37 37 chr1 122506267 122506321 -120158032 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 9981 44 8 80 chr1 122506321 122507785 -120156568 - SVA Other Other -23 1363 5 824 295 70 16 chr1 122507837 122508353 -120156000 - L1M4 LINE L1 -1649 4497 3954 2214 85 0 0 chr1 122508353 122508663 -120155690 - AluSx SINE Alu 0 310 1 240 196 31 55 chr1 122508674 122508837 -120155516 + (TA)n Simple_repeat Simple_repeat 2 160 0 369 314 28 73 chr1 122508917 122509204 -120155149 - L2 LINE L2 -598 2716 2443 3679 163 34 85 chr1 122509209 122509587 -120154766 - L1MB3 LINE L1 0 6183 5787 2246 84 0 3 chr1 122509587 122509883 -120154470 - AluSq SINE Alu -18 295 1 3679 163 34 85 chr1 122509883 122510204 -120154149 - L1MB3 LINE L1 -396 5787 5451 1926 122 18 0 chr1 122510204 122510490 -120153863 - AluSx SINE Alu -21 291 1 3679 163 34 85 chr1 122510490 122510577 -120153776 - L1MB3 LINE L1 -732 5451 5361 236 30 30 0 chr1 122510577 122510610 -120153743 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 3679 163 34 85 chr1 122510610 122510939 -120153414 - L1MB3 LINE L1 -822 5361 5124 1914 128 24 0 chr1 122511102 122511392 -120152961 - AluSx SINE Alu -15 297 1 273 286 36 0 chr1 122511404 122511488 -120152865 - L2 LINE L2 0 3313 3227 197 375 91 27 chr1 122511485 122511893 -120152460 - L2 LINE L2 -592 2722 2289 * 2634 82 31 91 chr1 122512183 122512853 -120151500 + SVA Other Other 393 868 -575 6150 63 6 31 chr1 122512870 122513744 -120150609 + SVA Other Other 534 1385 -1 294 169 0 0 chr1 122513747 122513812 -120150541 + A-rich Low_complexity Low_complexity 1 65 0 1356 160 53 41 chr1 122513858 122514407 -120149946 + MER31-int LTR ERV1 884 3226 -3105 518 119 4 15 chr1 122514594 122514830 -120149523 + AluSx SINE Alu 1 292 -17 2080 127 0 0 chr1 122514907 122515191 -120149162 + LTR17 LTR ERV1 448 731 -49 400 205 0 4 chr1 122515202 122515276 -120149077 - AluS SINE Alu -239 64 1 1736 64 45 0 chr1 122515409 122515629 -120148724 - LTR12 LTR ERV1 0 714 485 370 257 40 0 chr1 122515634 122515735 -120148618 - LTR30 LTR ERV1 -79 643 539 4274 151 98 82 chr1 122515735 122516839 -120147514 - pTR5 LTR ERV1 -417 2021 744 854 158 20 0 chr1 122516901 122517047 -120147306 - AluJb SINE Alu -22 290 142 4342 128 22 16 chr1 122517047 122517726 -120146627 + LTR8 LTR ERV1 1 683 -8 700 196 36 0 chr1 122517734 122517872 -120146481 - AluSq/x SINE Alu -168 145 3 1784 177 153 129 chr1 122517965 122518030 -120146323 + LTR49-int LTR ERV1 2510 2572 -3759 2104 123 3 0 chr1 122518030 122518340 -120146013 - AluSp SINE Alu -2 311 1 1784 177 153 129 chr1 122518340 122518490 -120145863 + LTR49-int LTR ERV1 2572 2717 -3614 1654 150 52 3 chr1 122518490 122518777 -120145576 - AluSx SINE Alu -11 301 1 1784 177 153 129 chr1 122518777 122518837 -120145516 + LTR49-int LTR ERV1 2717 2774 -3557 1901 145 0 3 chr1 122518837 122519141 -120145212 - AluSx SINE Alu -9 303 1 1784 177 153 129 chr1 122519141 122519436 -120144917 + LTR49-int LTR ERV1 2774 3061 -3270 2190 110 7 0 chr1 122519436 122519746 -120144607 - AluSp SINE Alu -1 312 1 1784 177 153 129 chr1 122519746 122520072 -120144281 + LTR49-int LTR ERV1 3061 3378 -2953 2079 107 0 7 chr1 122520072 122520371 -120143982 + AluSx SINE Alu 1 297 -15 1784 177 153 129 chr1 122520371 122520384 -120143969 + LTR49-int LTR ERV1 3378 4847 -1484 25 0 0 0 chr1 122520774 122520799 -120143554 + AT_rich Low_complexity Low_complexity 1 25 0 1765 130 62 28 chr1 122520799 122521152 -120143201 + LTR49-int LTR ERV1 3519 3883 -1053 1611 121 114 4 chr1 122521171 122521435 -120142918 + AluSg1 SINE Alu 1 293 -16 919 200 6 11 chr1 122521444 122521619 -120142734 + LTR49-int LTR ERV1 5766 5939 -392 1839 155 76 56 chr1 122521654 122522047 -120142306 + LTR47A LTR ERVL 1 401 -51 813 140 0 44 chr1 122522047 122522183 -120142170 - FLAM_C SINE Alu -12 131 2 309 226 16 0 chr1 122522183 122522245 -120142108 + LTR47A LTR ERVL 390 452 0 732 220 58 11 chr1 122522328 122522519 -120141834 + LTR49-int LTR ERV1 6792 6991 -546 671 214 0 8 chr1 122522819 122522945 -120141408 + MIR SINE MIR 33 157 -105 2300 81 0 3 chr1 122522952 122523249 -120141104 + AluSc SINE Alu 1 296 -13 192 77 0 0 chr1 122523732 122523758 -120140595 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 2761 124 11 82 chr1 122523799 122523993 -120140360 + L1MB3 LINE L1 5652 5858 -325 2246 84 0 3 chr1 122523993 122524289 -120140064 + AluSq SINE Alu 1 295 -18 2761 124 11 82 chr1 122524289 122524667 -120139686 + L1MB3 LINE L1 5858 6183 0 369 314 28 73 chr1 122524672 122524959 -120139394 + L2 LINE L2 2443 2716 -598 240 196 31 55 chr1 122525039 122525202 -120139151 + (TA)n Simple_repeat Simple_repeat 1 159 0 2215 85 0 0 chr1 122525213 122525523 -120138830 + AluSx SINE Alu 1 310 0 824 295 70 16 chr1 122525523 122526039 -120138314 + L1M4 LINE L1 3954 4497 -1649 9982 44 8 80 chr1 122526091 122527609 -120136744 + SVA Other Other 5 1417 0 288 152 6 262 chr1 122527609 122527672 -120136681 + L1M4 LINE L1 4488 4565 -1581 1713 185 0 0 chr1 122527672 122527970 -120136383 + AluSx SINE Alu 3 300 -12 288 152 6 262 chr1 122527970 122527991 -120136362 + L1M4 LINE L1 4565 4514 -1632 746 223 0 0 chr1 122527991 122528121 -120136232 + FLAM_A SINE Alu 2 131 -2 288 152 6 262 chr1 122528121 122528199 -120136154 + L1M4 LINE L1 4513 4609 -1537 2203 94 3 0 chr1 122528264 122528563 -120135790 + AluSg SINE Alu 1 300 -10 2245 94 3 0 chr1 122528691 122529000 -120135353 + AluSp SINE Alu 1 310 -3 1985 117 0 0 chr1 122529227 122529532 -120134821 - AluSx SINE Alu 0 305 1 2045 110 13 0 chr1 122530369 122530668 -120133685 - AluSq SINE Alu -10 303 1 206 209 0 76 chr1 122530717 122530822 -120133531 + (TTTA)n Simple_repeat Simple_repeat 4 100 0 180 0 0 0 chr1 122530958 122530978 -120133375 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 3931 41 0 0 chr1 122530979 122531442 -120132911 - L1PA5 LINE L1 -17 6137 5675 1876 98 0 0 chr1 122531471 122531726 -120132627 - AluSx SINE Alu -18 294 40 2154 103 3 10 chr1 122531865 122532166 -120132187 - AluSp SINE Alu -14 299 1 1564 196 0 13 chr1 122532289 122532605 -120131748 + AluJb SINE Alu 1 312 0 1981 100 40 3 chr1 122532631 122532930 -120131423 + AluSg SINE Alu 1 310 0 374 183 0 0 chr1 122533062 122533122 -120131231 - MER8 DNA MER2_type 0 239 180 2120 162 22 11 chr1 122533122 122533486 -120130867 - Tigger1 DNA MER2_type -2050 368 1 * 2133 130 6 18 chr1 122533486 122533805 -120130548 + MLT1B LTR MaLR 76 390 0 429 275 113 0 chr1 122533835 122533995 -120130358 - MIR SINE MIR -65 197 20 228 319 56 0 chr1 122534103 122534175 -120130178 - MIR SINE MIR -93 115 40 333 0 0 0 chr1 122534906 122534943 -120129410 + (TA)n Simple_repeat Simple_repeat 2 38 0 34 0 0 0 chr1 122534970 122535004 -120129349 + AT_rich Low_complexity Low_complexity 1 34 0 411 202 10 10 chr1 122535503 122535602 -120128751 - L1ME LINE L1 -302 5819 5721 677 316 38 5 chr1 122536746 122536958 -120127395 - MIR SINE MIR -6 256 38 449 246 63 16 chr1 122537092 122537148 -120127205 - MIR SINE MIR -130 132 80 1520 225 121 24 chr1 122537148 122537610 -120126743 + MLT1J LTR MaLR 1 507 -4 449 246 63 16 chr1 122537610 122537679 -120126674 - MIR SINE MIR -182 80 1 852 202 34 65 chr1 122537721 122537983 -120126370 - MLT1B LTR MaLR -52 338 85 620 196 256 0 chr1 122537978 122538111 -120126242 - MER21B LTR ERV1 -368 495 329 * 255 276 42 124 chr1 122538170 122538387 -120125966 - L2 LINE L2 -33 3239 3041 310 297 27 0 chr1 122539137 122539211 -120125142 - L2 LINE L2 -6 3307 3232 4971 187 80 15 chr1 122539220 122540322 -120124031 + MER69B DNA AcHobo 1 1182 -1344 2119 106 7 13 chr1 122540322 122540624 -120123729 + AluSg SINE Alu 1 300 -10 4971 187 80 15 chr1 122540624 122540673 -120123680 + MER69B DNA AcHobo 1182 1226 0 443 314 184 10 chr1 122540730 122541039 -120123314 - L2 LINE L2 -6 3266 2904 217 255 0 0 chr1 122541024 122541071 -120123282 + L2 LINE L2 3222 3268 -4 * 193 247 200 0 chr1 122541206 122541291 -120123062 - L2 LINE L2 -309 2963 2862 2356 89 3 0 chr1 122541513 122541805 -120122548 + AluY SINE Alu 1 293 -18 401 258 154 60 chr1 122542106 122542490 -120121863 + LTR33 LTR ERVL 102 521 0 491 206 66 15 chr1 122543009 122543145 -120121208 + L2 LINE L2 3161 3303 -10 404 290 91 34 chr1 122543723 122543904 -120120449 - MER20B DNA MER1_type -4 215 4 207 315 19 0 chr1 122544180 122544234 -120120119 + L2 LINE L2 3132 3186 -86 29 28 0 0 chr1 122544824 122544860 -120119493 + AT_rich Low_complexity Low_complexity 1 36 0 868 200 89 67 chr1 122545864 122546012 -120118341 + L1ME2 LINE L1 5754 5912 -252 2471 181 44 11 chr1 122546012 122546465 -120117888 - MER70A LTR ERVL -4 468 1 868 200 89 67 chr1 122546465 122546586 -120117767 + L1ME2 LINE L1 5912 6029 -135 666 171 29 14 chr1 122546667 122546807 -120117546 + L1ME2 LINE L1 6013 6154 -10 333 247 25 106 chr1 122546841 122547076 -120117277 + L1MC4 LINE L1 7826 8041 -1 288 337 21 0 chr1 122547172 122547267 -120117086 - MIR SINE MIR -111 151 55 4054 116 15 31 chr1 122547272 122547345 -120117008 - L1MA4A LINE L1 -56 6247 6174 2164 121 0 16 chr1 122547345 122547660 -120116693 - AluSx SINE Alu -2 310 1 4054 116 15 31 chr1 122547660 122548235 -120116118 - L1MA4A LINE L1 -129 6174 5609 783 147 0 49 chr1 122548235 122548248 -120116105 - AluJo SINE Alu -175 137 125 186 43 0 0 chr1 122548248 122548271 -120116082 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 783 147 0 49 chr1 122548271 122548400 -120115953 - AluJo SINE Alu -187 125 2 4669 141 36 14 chr1 122548400 122549503 -120114850 - L1MA4A LINE L1 -695 5608 4477 2094 145 18 3 chr1 122549515 122549852 -120114501 - L1PA16 LINE L1 -4 7600 7259 180 0 0 0 chr1 122549854 122549874 -120114479 + (TTC)n Simple_repeat Simple_repeat 2 21 0 15380 214 28 18 chr1 122549887 122549902 -120114451 - L1PA16 LINE L1 -339 7265 7252 1501 94 64 4 chr1 122549902 122550136 -120114217 - L1MA2 LINE L1 0 6304 6057 15380 214 28 18 chr1 122550136 122551626 -120112727 - L1PA16 LINE L1 -352 7252 5777 2010 146 7 0 chr1 122551626 122551913 -120112440 + AluSx SINE Alu 1 289 -23 15380 214 28 18 chr1 122551913 122554470 -120109883 - L1PA16 LINE L1 -1827 5777 3195 2595 60 0 0 chr1 122554470 122554771 -120109582 - AluY SINE Alu -10 301 1 15380 214 28 18 chr1 122554771 122555794 -120108559 - L1PA16 LINE L1 -4409 3195 2183 322 316 5 54 chr1 122556425 122556630 -120107723 - L1PA16 LINE L1 -5268 2306 2085 1126 343 107 17 chr1 122556656 122557189 -120107164 - L1PA16 LINE L1 -6206 1368 788 15802 175 21 22 chr1 122557199 122558266 -120106087 - L1 LINE L1 -1653 5195 4128 3199 69 11 47 chr1 122558266 122558569 -120105784 + MER57B LTR ERV1 1 284 -150 2170 121 0 25 chr1 122558569 122558884 -120105469 - AluSx SINE Alu -2 310 4 3199 69 11 47 chr1 122558884 122559030 -120105323 + MER57B LTR ERV1 284 434 0 15802 175 21 22 chr1 122559030 122560801 -120103552 - L1 LINE L1 -2720 4128 2356 3739 98 0 23 chr1 122560801 122561139 -120103214 - MER9 LTR ERVK 0 511 188 2641 7 0 0 chr1 122561139 122561419 -120102934 + AluYa5 SINE Alu 26 305 -6 3739 98 0 23 chr1 122561419 122561603 -120102750 - MER9 LTR ERVK -323 188 1 15802 175 21 22 chr1 122561603 122563963 -120100390 - L1 LINE L1 -4492 2356 3 182 62 31 0 chr1 122564964 122564996 -120099357 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2467 70 3 0 chr1 122565686 122565986 -120098367 - AluY SINE Alu -10 301 1 2417 209 52 12 chr1 122565999 122566502 -120097851 - MLT1F LTR MaLR -19 523 1 240 224 0 0 chr1 122566593 122566642 -120097711 - L2 LINE L2 -86 3227 3179 381 284 102 6 chr1 122566706 122566882 -120097471 + L2 LINE L2 2841 3033 -280 345 295 7 36 chr1 122566884 122567023 -120097330 + L2 LINE L2 3161 3295 -18 1863 191 93 7 chr1 122568323 122568753 -120095600 + MLT1C LTR MaLR 1 467 0 1899 109 4 4 chr1 122569168 122569257 -120095096 + AluSx SINE Alu 44 132 -180 2181 96 7 0 chr1 122569257 122569537 -120094816 + AluSp SINE Alu 13 294 -19 1899 109 4 4 chr1 122569537 122569704 -120094649 + AluSx SINE Alu 131 300 -12 189 328 16 16 chr1 122569795 122569856 -120094497 + MIR3 SINE MIR 10 70 -138 7016 143 86 58 chr1 122570339 122571157 -120093196 + L1MCa LINE L1 702 1496 -4930 2042 132 3 7 chr1 122571157 122571452 -120092901 + AluSx SINE Alu 2 295 -17 7016 143 86 58 chr1 122571452 122572001 -120092352 + L1MCa LINE L1 1496 2121 -4305 660 62 0 31 chr1 122572001 122572097 -120092256 + L1PA8 LINE L1 6079 6171 -1 7016 143 86 58 chr1 122572097 122572303 -120092050 + L1MCa LINE L1 2121 2320 -4106 1343 145 0 26 chr1 122572303 122572530 -120091823 + AluJo SINE Alu 87 307 -5 262 0 47 0 chr1 122572532 122572575 -120091778 + L1MCa LINE L1 2322 2366 -4060 * 6077 215 41 58 chr1 122572573 122573269 -120091084 + L1MC1 LINE L1 2550 3257 -2889 2168 126 7 0 chr1 122573269 122573579 -120090774 - AluSx SINE Alu 0 312 1 6077 215 41 58 chr1 122573579 122574141 -120090212 + L1MC1 LINE L1 3257 3767 -2379 1934 189 28 3 chr1 122574141 122574495 -120089858 - MLT1A1 LTR MaLR -1 364 2 6077 215 41 58 chr1 122574495 122575114 -120089239 + L1MC1 LINE L1 3767 4395 -1751 7539 49 5 0 chr1 122575130 122576022 -120088331 - MER11C LTR ERVK 0 1071 176 1797 236 17 28 chr1 122576087 122576388 -120087965 + L1MC1 LINE L1 4411 4705 -1441 2231 125 3 0 chr1 122576388 122576699 -120087654 + AluSx SINE Alu 1 312 0 1797 236 17 28 chr1 122576699 122576940 -120087413 + L1MC1 LINE L1 4705 4947 -1199 1324 163 5 10 chr1 122576947 122577156 -120087197 - AluJb SINE Alu -18 294 87 1423 223 35 29 chr1 122577159 122577409 -120086944 + L1MC1 LINE L1 4942 5198 -948 2195 133 3 0 chr1 122577409 122577711 -120086642 + AluSx SINE Alu 1 303 -9 1423 223 35 29 chr1 122577711 122577914 -120086439 + L1MC1 LINE L1 5198 5398 -748 854 183 6 78 chr1 122577915 122577935 -120086418 + FAM SINE Alu 2 22 -299 2681 109 56 19 chr1 122577935 122578347 -120086006 + MSTA LTR MaLR 1 427 -1 854 183 6 78 chr1 122578347 122578506 -120085847 + FAM SINE Alu 22 168 -17 5239 128 57 38 chr1 122578513 122578676 -120085677 + L1MC1 LINE L1 5388 5546 -787 2004 109 0 0 chr1 122578676 122578932 -120085421 + AluSx SINE Alu 1 256 -56 5239 128 57 38 chr1 122578932 122579679 -120084674 + L1MC1 LINE L1 5546 6315 -18 334 242 61 0 chr1 122580073 122580172 -120084181 + MIR SINE MIR 88 192 -70 189 291 139 0 chr1 122580561 122580647 -120083706 - MIR SINE MIR -73 135 38 301 133 0 0 chr1 122580698 122580743 -120083610 - MLT1L LTR MaLR 0 615 571 343 287 8 33 chr1 122581237 122581359 -120082994 + LTR67 LTR ERVL 428 546 -11 1115 156 51 60 chr1 122581365 122581540 -120082813 + L1MB7 LINE L1 5612 5787 -397 2451 78 3 0 chr1 122581540 122581836 -120082517 + AluSp SINE Alu 9 305 -8 1115 156 51 60 chr1 122581836 122581903 -120082450 + L1MB7 LINE L1 5787 5853 -331 2204 61 4 0 chr1 122581903 122582164 -120082189 + AluY SINE Alu 1 262 -49 1115 156 51 60 chr1 122582164 122582382 -120081971 + L1MB7 LINE L1 5853 6183 -1 408 216 29 58 chr1 122582562 122582649 -120081704 + MER113 DNA MER1_type? 1 84 -437 2495 70 3 0 chr1 122582649 122582951 -120081402 - AluSp SINE Alu -10 303 1 408 216 29 58 chr1 122582951 122583002 -120081351 + MER113 DNA MER1_type? 84 135 -386 6342 84 18 22 chr1 122583003 122583892 -120080461 - L1PA13 LINE L1 -25 6138 5254 1397 153 51 4 chr1 122583893 122584167 -120080186 + L1PA13 LINE L1 4966 5252 -894 2300 105 7 0 chr1 122584173 122584479 -120079874 - AluSx SINE Alu -4 308 1 2027 104 29 0 chr1 122584842 122585121 -120079232 + AluSg SINE Alu 1 287 -23 427 94 16 16 chr1 122585294 122585358 -120078995 + MADE1 DNA Mariner 2 65 -15 355 111 63 0 chr1 122585360 122585423 -120078930 + MADE1 DNA Mariner 14 80 0 3870 128 47 27 chr1 122585563 122585687 -120078666 - MER39 LTR ERV1 -2 705 585 2459 46 23 26 chr1 122585687 122585993 -120078360 + AluY SINE Alu 1 305 -6 3870 128 47 27 chr1 122585993 122586540 -120077813 - MER39 LTR ERV1 -122 585 12 981 189 37 28 chr1 122587988 122588205 -120076148 - MER20 DNA MER1_type 0 219 1 578 192 58 138 chr1 122588210 122588450 -120075903 + MIR SINE MIR 40 260 -2 384 221 8 74 chr1 122588627 122588749 -120075604 + MIR3 SINE MIR 56 169 -39 2148 94 7 3 chr1 122588753 122589039 -120075314 + AluSq SINE Alu 1 287 -26 283 397 55 0 chr1 122589049 122589195 -120075158 + MER5B DNA MER1_type 2 155 -23 2248 88 7 10 chr1 122589196 122589492 -120074861 + AluSq SINE Alu 1 295 -18 318 333 30 12 chr1 122589690 122589855 -120074498 - L3b LINE CR1 -172 1411 1244 301 392 86 6 chr1 122589889 122590228 -120074125 + L2 LINE L2 2530 2895 -419 492 0 0 17 chr1 122590511 122590571 -120073782 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1974 112 52 0 chr1 122590571 122590840 -120073513 - AluSx SINE Alu -29 283 1 474 243 21 62 chr1 122591084 122591228 -120073125 - MER117 DNA MER1_type -30 167 30 876 230 46 9 chr1 122592245 122592462 -120071891 - MIR SINE MIR -10 252 28 190 213 43 0 chr1 122592927 122592974 -120071379 - L2 LINE L2 0 3313 3265 364 309 29 7 chr1 122593188 122593324 -120071029 + G-rich Low_complexity Low_complexity 3 141 0 2248 112 0 10 chr1 122594326 122594639 -120069714 + AluSx SINE Alu 1 310 -2 440 312 128 0 chr1 122595273 122595414 -120068939 - MIR SINE MIR -72 190 32 246 190 71 65 chr1 122595851 122595946 -120068407 - MIR SINE MIR -97 111 37 2370 113 0 0 chr1 122595954 122596264 -120068089 - AluSx SINE Alu -2 310 1 734 317 37 8 chr1 122596475 122596718 -120067635 - MIR SINE MIR 0 262 13 2231 104 10 0 chr1 122598229 122598527 -120065826 + AluSp SINE Alu 1 301 -12 190 311 89 0 chr1 122598622 122598712 -120065641 + MIR SINE MIR 86 183 -79 804 183 60 51 chr1 122598715 122599033 -120065320 - MLT1B LTR MaLR -2 388 1 225 272 161 0 chr1 122599128 122599209 -120065144 + MIR SINE MIR 53 146 -116 2124 143 114 11 chr1 122599209 122599587 -120064766 + MSTB LTR MaLR 1 417 -9 235 198 139 12 chr1 122599596 122599682 -120064671 + MIR SINE MIR 142 238 -24 1287 111 0 0 chr1 122599897 122600069 -120064284 + AluSq SINE Alu 142 313 0 862 181 268 0 chr1 122600509 122600752 -120063601 + MER5C DNA MER1_type 17 324 0 181 273 36 0 chr1 122601063 122601118 -120063235 + MIR SINE MIR 7 63 -199 254 269 35 99 chr1 122601243 122601393 -120062960 + MIR SINE MIR 86 225 -37 2384 77 10 10 chr1 122601393 122601692 -120062661 + AluSg SINE Alu 1 299 -11 254 269 35 99 chr1 122601692 122601712 -120062641 + MIR SINE MIR 225 245 -17 378 0 0 0 chr1 122602594 122602636 -120061717 + (CA)n Simple_repeat Simple_repeat 1 42 0 2184 104 7 14 chr1 122603204 122603501 -120060852 + AluSq SINE Alu 1 295 -18 339 326 188 14 chr1 122603782 122604058 -120060295 - L3 LINE CR1 -24 1553 1230 1672 154 49 31 chr1 122604254 122604540 -120059813 + AluJb SINE Alu 2 292 -20 180 0 0 0 chr1 122604887 122604907 -120059446 + (TG)n Simple_repeat Simple_repeat 2 21 0 2389 72 28 0 chr1 122605110 122605400 -120058953 - AluSc SINE Alu -11 298 1 509 294 20 0 chr1 122605916 122606062 -120058291 - MIR3 SINE MIR 0 208 60 2371 74 0 10 chr1 122606571 122606869 -120057484 + AluSx SINE Alu 1 295 -17 2007 120 9 44 chr1 122606908 122607224 -120057129 + AluSx SINE Alu 1 305 -7 189 107 0 0 chr1 122608968 122608996 -120055357 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 1677 167 7 20 chr1 122609254 122609553 -120054800 - AluJb SINE Alu -6 306 12 306 0 0 0 chr1 122610681 122610715 -120053638 + (CA)n Simple_repeat Simple_repeat 1 34 0 2272 97 7 3 chr1 122610841 122611150 -120053203 - AluSp SINE Alu -3 310 1 420 298 149 25 chr1 122611577 122611738 -120052615 - MER5A DNA MER1_type 0 189 9 2412 77 0 19 chr1 122612056 122612367 -120051986 + AluSx SINE Alu 1 305 -7 2186 112 0 3 chr1 122612687 122612981 -120051372 - AluSg SINE Alu -17 293 1 2197 98 7 3 chr1 122613327 122613623 -120050730 + AluSg SINE Alu 1 297 -13 2294 105 3 0 chr1 122613633 122613937 -120050416 + AluSp SINE Alu 1 305 -8 2056 136 7 0 chr1 122613988 122614275 -120050078 - AluSx SINE Alu -23 289 1 2024 139 3 0 chr1 122614336 122614630 -120049723 + AluSx SINE Alu 3 297 -15 1074 215 8 24 chr1 122615302 122615481 -120048872 - MIR SINE MIR -8 254 79 2482 57 0 0 chr1 122615481 122615778 -120048575 + AluY SINE Alu 3 299 -12 1074 215 8 24 chr1 122615778 122615849 -120048504 - MIR SINE MIR -183 79 8 2242 116 3 0 chr1 122616224 122616535 -120047818 + AluSq SINE Alu 1 312 -1 2278 102 3 0 chr1 122616662 122616955 -120047398 + AluSg SINE Alu 1 294 -16 245 344 108 6 chr1 122617128 122617285 -120047068 - MIR3 SINE MIR -29 179 7 956 178 31 12 chr1 122617446 122617609 -120046744 - FAM SINE Alu -9 166 1 2360 95 0 0 chr1 122618617 122618913 -120045440 + AluSc SINE Alu 1 296 -13 1463 217 17 3 chr1 122618932 122619222 -120045131 + AluJb SINE Alu 1 294 -18 751 180 0 39 chr1 122619352 122619480 -120044873 - FLAM_A SINE Alu -10 123 1 1821 109 0 0 chr1 122620625 122620915 -120043438 + AluSg SINE Alu 44 333 0 22 0 0 0 chr1 122620964 122620986 -120043367 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 122621215 122621247 -120043106 + AT_rich Low_complexity Low_complexity 1 32 0 874 207 0 0 chr1 122622146 122622296 -120042057 - FRAM SINE Alu -16 150 1 817 134 0 0 chr1 122622510 122622622 -120041731 + AluSg/x SINE Alu 176 287 -25 1578 145 24 0 chr1 122622852 122623107 -120041246 + L1PB3 LINE L1 5889 6149 -5 2001 141 10 19 chr1 122623107 122623420 -120040933 + AluSx SINE Alu 1 310 -2 189 0 0 0 chr1 122623431 122623452 -120040901 + (CA)n Simple_repeat Simple_repeat 2 22 0 684 246 49 16 chr1 122624306 122624489 -120039864 - MIR3 SINE MIR -18 190 2 185 149 0 21 chr1 122624594 122624624 -120039729 + (TATATG)n Simple_repeat Simple_repeat 3 33 -15 1982 121 3 3 chr1 122624624 122624913 -120039440 + AluSq SINE Alu 1 289 -24 185 149 0 21 chr1 122624913 122624929 -120039424 + (TATATG)n Simple_repeat Simple_repeat 33 48 0 2138 111 3 0 chr1 122625560 122625848 -120038505 - AluSx SINE Alu -23 289 1 2328 95 0 0 chr1 122625921 122626217 -120038136 + AluSx SINE Alu 3 298 -14 283 286 0 102 chr1 122626356 122626503 -120037850 + L1ME LINE L1 5525 5656 -465 21 36 0 0 chr1 122626652 122626680 -120037673 + AT_rich Low_complexity Low_complexity 1 28 0 848 202 112 135 chr1 122626939 122627522 -120036831 + L1MC4 LINE L1 7460 8011 -31 2194 116 0 0 chr1 122627638 122627941 -120036412 + AluSx SINE Alu 1 303 -9 2442 65 0 3 chr1 122628202 122628494 -120035859 - AluSc SINE Alu -17 292 2 280 111 0 0 chr1 122628601 122628646 -120035707 + MER31A LTR ERV1 441 485 0 722 210 0 0 chr1 122628692 122628811 -120035542 - FLAM_A SINE Alu -14 119 1 228 254 97 18 chr1 122628996 122629110 -120035243 - L1ME4a LINE L1 -14 6107 5985 2287 92 0 0 chr1 122629271 122629575 -120034778 - AluSg SINE Alu 0 306 3 254 333 125 8 chr1 122629576 122629696 -120034657 - MIR SINE MIR -96 166 33 1262 122 17 6 chr1 122629740 122629921 -120034432 + AluSg/x SINE Alu 113 295 -17 3085 204 85 65 chr1 122629925 122630792 -120033561 - MER31A-int LTR ERV1 -4042 894 10 2081 144 126 58 chr1 122630836 122631288 -120033065 - MER31A LTR ERV1 0 485 3 207 239 22 0 chr1 122631603 122631649 -120032704 - L2 LINE L2 -16 3256 3210 180 220 165 0 chr1 122631647 122631738 -120032615 + L2 LINE L2 2729 2834 -480 * 2193 91 7 13 chr1 122631874 122632182 -120032171 + AluY SINE Alu 1 306 -5 848 298 91 21 chr1 122632285 122632624 -120031729 + L2 LINE L2 2937 3299 -14 492 236 121 0 chr1 122632634 122632774 -120031579 - MIR SINE MIR -66 196 40 452 182 172 4 chr1 122632790 122632988 -120031365 - MER5C DNA MER1_type 0 324 5 223 204 56 19 chr1 122633021 122633075 -120031278 - MER5B DNA MER1_type -1 177 122 2068 96 18 0 chr1 122633079 122633359 -120030994 + AluSx SINE Alu 4 288 -24 29 0 0 0 chr1 122633359 122633388 -120030965 + AT_rich Low_complexity Low_complexity 1 29 0 526 73 0 0 chr1 122634345 122634413 -120029940 - L1MA10 LINE L1 -8 6326 6259 1941 152 7 13 chr1 122634904 122635207 -120029146 + AluJb SINE Alu 1 301 -11 1989 123 0 21 chr1 122635209 122635527 -120028826 + AluSg SINE Alu 1 312 0 21 0 0 0 chr1 122636386 122636407 -120027946 + AT_rich Low_complexity Low_complexity 1 21 0 197 294 44 15 chr1 122636676 122636744 -120027609 + MIR SINE MIR 20 89 -173 39 38 0 0 chr1 122637221 122637274 -120027079 + AT_rich Low_complexity Low_complexity 1 53 0 200 322 0 0 chr1 122637317 122637376 -120026977 - L3 LINE CR1 -1 1576 1518 395 324 7 28 chr1 122637458 122637600 -120026753 + MIR SINE MIR 22 160 -102 2301 101 0 0 chr1 122638737 122639035 -120025318 + AluSc SINE Alu 1 298 -11 2236 94 7 0 chr1 122639173 122639459 -120024894 + AluSg SINE Alu 1 288 -22 243 289 154 45 chr1 122640194 122640350 -120024003 + MIR SINE MIR 60 232 -30 1627 17 0 0 chr1 122640657 122640833 -120023520 - L1PA3 LINE L1 0 6155 5980 2310 116 6 0 chr1 122641424 122641735 -120022618 - AluSq SINE Alu 0 313 1 832 163 74 0 chr1 122643220 122643355 -120020998 + AluSq/x SINE Alu 1 145 -168 1661 116 39 0 chr1 122643355 122643588 -120020765 + AluSx SINE Alu 55 296 -16 2517 60 0 3 chr1 122643588 122643888 -120020465 - AluY SINE Alu -12 299 1 28 0 0 0 chr1 122643888 122643916 -120020437 + AT_rich Low_complexity Low_complexity 1 28 0 346 243 47 0 chr1 122644201 122644308 -120020045 - L1MC4a LINE L1 -1879 5929 5818 2260 91 3 44 chr1 122644449 122644767 -120019586 + AluSx SINE Alu 1 305 -7 436 255 47 27 chr1 122644858 122645007 -120019346 - MIR SINE MIR -37 225 74 249 220 102 0 chr1 122646439 122646498 -120017855 - L2 LINE L2 -2 3270 3206 2294 92 0 19 chr1 122646795 122647112 -120017241 + AluSx SINE Alu 1 311 -1 990 192 11 0 chr1 122647314 122647496 -120016857 - AluJb SINE Alu -43 269 86 2199 102 16 3 chr1 122648139 122648443 -120015910 + AluSq SINE Alu 1 308 -5 2304 99 3 3 chr1 122648860 122649172 -120015181 + AluSp SINE Alu 1 312 -1 2620 59 0 0 chr1 122649930 122650233 -120014120 + AluY SINE Alu 2 304 -7 490 266 40 40 chr1 122650291 122650401 -120013952 + MER5B DNA MER1_type 1 110 -68 405 0 0 0 chr1 122650401 122650446 -120013907 + (TTA)n Simple_repeat Simple_repeat 3 47 0 1608 56 0 0 chr1 122650446 122650641 -120013712 - L1PA5 LINE L1 -18 6136 5942 490 266 40 40 chr1 122650641 122650702 -120013651 + MER5B DNA MER1_type 108 173 -5 1407 138 10 125 chr1 122650758 122650798 -120013555 + MSTB LTR MaLR 159 202 -224 2402 90 0 0 chr1 122650798 122651098 -120013255 + AluSx SINE Alu 1 300 -12 639 161 119 0 chr1 122651105 122651223 -120013130 + FLAM_C SINE Alu 2 133 0 1407 138 10 125 chr1 122651223 122651234 -120013119 + MSTB LTR MaLR 208 219 -207 1367 213 31 7 chr1 122651234 122651490 -120012863 + AluJo SINE Alu 1 266 -46 2203 118 0 7 chr1 122651490 122651787 -120012566 + AluSx SINE Alu 3 297 -15 1367 213 31 7 chr1 122651787 122651817 -120012536 + AluJo SINE Alu 266 294 -18 1407 138 10 125 chr1 122651817 122652061 -120012292 + MSTB LTR MaLR 219 426 0 1954 106 4 0 chr1 122652624 122652879 -120011474 + AluSq SINE Alu 1 256 -57 1059 77 8 0 chr1 122652880 122653010 -120011343 + AluSc SINE Alu 60 190 -119 2304 99 10 0 chr1 122653303 122653607 -120010746 + AluSq SINE Alu 1 307 -6 2465 73 3 0 chr1 122653766 122654069 -120010284 + AluY SINE Alu 1 304 -7 2453 77 3 0 chr1 122654125 122654424 -120009929 + AluSg SINE Alu 1 300 -10 1952 102 87 0 chr1 122654428 122654703 -120009650 + AluSg SINE Alu 1 299 -11 2193 94 40 0 chr1 122654742 122655040 -120009313 - AluSg SINE Alu 0 310 1 1730 194 0 9 chr1 122655066 122655381 -120008972 - AluJb SINE Alu 0 312 1 2286 103 3 10 chr1 122655504 122655805 -120008548 + AluSp SINE Alu 1 299 -14 1984 98 0 0 chr1 122655944 122656199 -120008154 + AluSx SINE Alu 40 294 -18 3939 41 0 0 chr1 122656228 122656712 -120007641 + L1PA5 LINE L1 5675 6158 0 206 209 0 76 chr1 122656848 122656953 -120007400 + (TAAA)n Simple_repeat Simple_repeat 4 100 0 2167 110 13 0 chr1 122657002 122657301 -120007052 + AluSq SINE Alu 1 303 -10 2235 120 0 0 chr1 122658138 122658439 -120005914 + AluSx SINE Alu 1 301 -11 2298 109 0 3 chr1 122658447 122658751 -120005602 + AluSq SINE Alu 1 303 -10 2212 90 21 0 chr1 122659220 122659508 -120004845 - AluSp SINE Alu -19 294 1 2447 43 0 7 chr1 122659537 122659817 -120004536 - AluSc SINE Alu -31 278 1 1751 108 0 0 chr1 122662711 122662942 -120001411 - AluSx SINE Alu -81 231 1 2467 90 3 0 chr1 122662962 122663272 -120001081 - AluSp SINE Alu -2 311 1 246 284 27 0 chr1 122663867 122663941 -120000412 + L2 LINE L2 3227 3302 -11 1991 128 28 0 chr1 122663963 122664252 -120000101 + AluSx SINE Alu 1 297 -15 1488 150 70 11 chr1 122664415 122664745 -119999608 + L1M3 LINE L1 5124 5484 -696 236 30 30 0 chr1 122664745 122664778 -119999575 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 1488 150 70 11 chr1 122664778 122664864 -119999489 + L1M3 LINE L1 5484 5563 -617 2047 122 18 0 chr1 122664865 122665151 -119999202 + AluSx SINE Alu 1 291 -21 739 50 20 0 chr1 122665271 122665393 -119998960 + AluYa5/8 SINE Alu 184 307 0 2128 113 3 7 chr1 122665491 122665783 -119998570 - AluSx SINE Alu -21 291 1 2270 93 10 22 chr1 122666152 122666465 -119997888 - AluSg SINE Alu -1 309 1 2238 115 3 3 chr1 122666555 122666867 -119997486 - AluSp SINE Alu -1 312 1 2214 108 10 0 chr1 122666867 122667164 -119997189 - AluSg SINE Alu -10 300 1 2166 85 7 33 chr1 122667791 122668097 -119996256 + AluSp SINE Alu 3 300 -13 1918 146 7 0 chr1 122668296 122668606 -119995747 + AluSg SINE Alu 1 312 0 288 274 12 36 chr1 122668692 122668776 -119995577 - MER81 DNA DNA -3 111 30 2294 63 0 0 chr1 122668811 122669081 -119995272 + AluSg1 SINE Alu 26 295 -14 501 198 132 9 chr1 122669120 122669226 -119995127 - FLAM_C SINE Alu -23 120 2 561 324 204 12 chr1 122669285 122669884 -119994469 - L3 LINE CR1 -394 1183 470 387 299 51 35 chr1 122669968 122670015 -119994338 + MARNA DNA Mariner 223 268 -318 884 189 163 71 chr1 122670015 122670191 -119994162 + MSTC LTR MaLR 1 159 -269 2073 92 3 86 chr1 122670191 122670270 -119994083 + AluSg SINE Alu 1 85 -225 2539 55 16 7 chr1 122670270 122670577 -119993776 + AluY SINE Alu 1 310 -1 2073 92 3 86 chr1 122670577 122670656 -119993697 + AluSg SINE Alu 85 169 -141 2408 84 7 0 chr1 122670656 122670964 -119993389 + AluSx SINE Alu 1 310 -2 2073 92 3 86 chr1 122670964 122671140 -119993213 + AluSg SINE Alu 169 308 -2 884 189 163 71 chr1 122671140 122671355 -119992998 + MSTC LTR MaLR 159 428 0 387 299 51 35 chr1 122671355 122671504 -119992849 + MARNA DNA Mariner 268 422 -164 295 278 122 0 chr1 122671614 122671704 -119992649 + MIR SINE MIR 1 101 -161 2585 171 83 5 chr1 122671756 122672190 -119992163 + MER21B LTR ERV1 1 468 -395 1989 131 3 3 chr1 122672192 122672475 -119991878 - AluSx SINE Alu -16 296 14 2581 55 0 7 chr1 122674555 122674862 -119989491 + AluY SINE Alu 1 305 -6 2024 120 3 20 chr1 122674995 122675296 -119989057 + AluSx SINE Alu 1 296 -16 2164 128 0 10 chr1 122675326 122675632 -119988721 + AluSx SINE Alu 1 303 -9 1484 96 14 37 chr1 122676017 122676235 -119988118 - AluSg/x SINE Alu -14 296 84 2297 116 3 0 chr1 122676503 122676804 -119987549 + AluSp SINE Alu 1 302 -11 1962 135 7 0 chr1 122676872 122677188 -119987165 + AluSx SINE Alu 1 318 0 2256 117 0 0 chr1 122677732 122678031 -119986322 + AluSg SINE Alu 1 299 -11 2308 108 0 3 chr1 122678077 122678373 -119985980 - AluSx SINE Alu -17 295 1 2367 88 0 0 chr1 122678380 122678675 -119985678 - AluY SINE Alu -16 295 1 692 173 8 15 chr1 122679148 122679256 -119985097 + AluJo SINE Alu 11 119 -193 180 0 0 0 chr1 122679256 122679276 -119985077 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 692 173 8 15 chr1 122679276 122679300 -119985053 + AluJo SINE Alu 119 142 -170 2376 97 0 3 chr1 122679555 122679855 -119984498 - AluSx SINE Alu -13 299 1 415 104 0 15 chr1 122680270 122680337 -119984016 - Alu SINE Alu -3 309 244 1549 202 30 132 chr1 122680695 122680760 -119983593 + HsTC2a DNA Tc2 1 71 -1829 2356 82 7 0 chr1 122680760 122681054 -119983299 - AluSg SINE Alu -14 296 1 1549 202 30 132 chr1 122681054 122681126 -119983227 + HsTC2a DNA Tc2 71 149 -1751 2351 95 13 0 chr1 122681126 122681431 -119982922 - AluSp SINE Alu -4 309 1 1549 202 30 132 chr1 122681431 122681674 -119982679 + HsTC2a DNA Tc2 149 415 -1485 2224 105 0 35 chr1 122681674 122681987 -119982366 + AluSx SINE Alu 1 302 -10 1549 202 30 132 chr1 122681987 122682078 -119982275 + HsTC2a DNA Tc2 415 394 -1506 2198 102 0 3 chr1 122682078 122682362 -119981991 + AluSq SINE Alu 1 283 -30 1549 202 30 132 chr1 122682362 122682531 -119981822 + HsTC2a DNA Tc2 393 578 -166 2286 117 3 0 chr1 122682827 122683135 -119981218 - AluSq SINE Alu -4 309 1 304 274 9 53 chr1 122683327 122683440 -119980913 - MLT1J2 LTR MaLR 0 450 343 1110 217 26 81 chr1 122683488 122683834 -119980519 + MLT1A1 LTR MaLR 1 327 -38 2013 125 37 3 chr1 122683839 122684135 -119980218 - AluSx SINE Alu -2 310 5 627 130 11 0 chr1 122684135 122684227 -119980126 + AluSq/x SINE Alu 38 130 -182 1669 129 89 0 chr1 122684233 122684504 -119979849 + MLT1A1-int LTR MaLR 278 572 -1163 438 295 139 12 chr1 122684506 122684757 -119979596 - MER93a LTR ERV1 0 402 120 1745 70 0 13 chr1 122684818 122685045 -119979308 - AluY SINE Alu -5 306 83 5026 225 36 24 chr1 122685137 122686265 -119978088 + MLT1A1-int LTR MaLR 594 1735 0 968 223 107 46 chr1 122686272 122686600 -119977753 + MLT1A1 LTR MaLR 16 363 -2 296 240 42 42 chr1 122686722 122686818 -119977535 - MLT1J1 LTR MaLR -285 161 66 315 232 111 0 chr1 122686875 122686974 -119977379 + L2 LINE L2 3204 3313 0 2344 91 0 0 chr1 122687274 122687570 -119976783 + AluSg SINE Alu 1 296 -14 1173 120 43 11 chr1 122689054 122689238 -119975115 - AluSx SINE Alu -2 310 121 1190 48 0 0 chr1 122689571 122689717 -119974636 - L1PA5 LINE L1 -1 6153 6008 916 129 0 36 chr1 122689717 122689857 -119974496 - AluSx SINE Alu -178 135 1 1095 107 82 0 chr1 122689963 122690122 -119974231 + AluSq SINE Alu 137 308 -5 2089 128 27 0 chr1 122690454 122690750 -119973603 - AluSx SINE Alu -8 304 1 2415 88 0 0 chr1 122690756 122691064 -119973289 - AluY SINE Alu -3 308 1 280 297 45 9 chr1 122691507 122691618 -119972735 + L2 LINE L2 3149 3263 -9 2109 108 3 10 chr1 122691620 122691915 -119972438 + AluSq SINE Alu 1 293 -20 2238 116 0 3 chr1 122692105 122692407 -119971946 - AluSg SINE Alu -7 303 3 198 71 0 0 chr1 122692584 122692612 -119971741 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 1610 212 0 3 chr1 122692646 122692948 -119971405 + AluJo SINE Alu 5 305 -7 233 308 183 10 chr1 122693142 122693246 -119971107 + MIR3 SINE MIR 82 203 -5 1826 145 35 3 chr1 122693549 122693838 -119970515 - AluJb SINE Alu -14 298 1 1038 91 0 0 chr1 122693839 122693971 -119970382 - AluSc SINE Alu -176 133 2 2312 90 3 13 chr1 122693971 122694272 -119970081 - AluSp SINE Alu -15 298 1 22 35 0 0 chr1 122694272 122694301 -119970052 + AT_rich Low_complexity Low_complexity 1 29 0 2061 116 10 20 chr1 122694398 122694691 -119969662 - AluSx SINE Alu -22 290 1 2300 108 3 0 chr1 122695108 122695404 -119968949 - AluSg SINE Alu -13 297 1 180 209 0 0 chr1 122695594 122695637 -119968716 + L2 LINE L2 3271 3313 0 502 147 0 0 chr1 122695747 122695822 -119968531 - AluS SINE Alu -15 296 222 933 80 0 0 chr1 122695823 122695936 -119968417 - AluSg SINE Alu -197 113 1 277 213 33 0 chr1 122696481 122696542 -119967811 + MIR SINE MIR 200 262 0 554 148 0 0 chr1 122697527 122697615 -119966738 - FLAM_A SINE Alu -6 136 49 2038 129 7 0 chr1 122697619 122697905 -119966448 - AluSx SINE Alu -24 288 1 1443 195 4 0 chr1 122697910 122698166 -119966187 - AluJo SINE Alu -8 304 48 28 29 0 0 chr1 122698200 122698235 -119966118 + AT_rich Low_complexity Low_complexity 1 35 0 1794 98 8 0 chr1 122698265 122698510 -119965843 - AluSg/x SINE Alu -1 311 65 1693 169 14 17 chr1 122698582 122698872 -119965481 - AluJo SINE Alu -21 291 3 2211 123 0 3 chr1 122699078 122699380 -119964973 - AluSx SINE Alu -11 301 1 2352 84 0 10 chr1 122699554 122699851 -119964502 - AluY SINE Alu -16 295 2 2201 109 6 13 chr1 122700007 122700319 -119964034 - AluSx SINE Alu -2 310 1 2157 109 3 26 chr1 122701274 122701578 -119962775 + AluSq SINE Alu 1 297 -16 1345 32 0 0 chr1 122701923 122702078 -119962275 - L1PA3 LINE L1 -3 6152 5998 1952 117 46 39 chr1 122702248 122702555 -119961798 - AluSx SINE Alu -3 309 1 2359 72 3 7 chr1 122702566 122702859 -119961494 - AluSp SINE Alu -21 292 1 2447 63 0 7 chr1 122702965 122703268 -119961085 - AluY SINE Alu -8 303 3 21 0 0 0 chr1 122703325 122703346 -119961007 + AT_rich Low_complexity Low_complexity 1 21 0 2055 128 0 14 chr1 122704494 122704809 -119959544 + AluSx SINE Alu 1 311 0 2127 123 3 3 chr1 122705114 122705414 -119958939 - AluSg SINE Alu -10 300 1 766 222 22 11 chr1 122705445 122705630 -119958723 + MIR SINE MIR 75 261 -1 210 191 0 0 chr1 122705692 122705734 -119958619 + GA-rich Low_complexity Low_complexity 1 42 0 1947 89 104 0 chr1 122706003 122706273 -119958080 + AluY SINE Alu 1 298 -13 526 238 90 84 chr1 122706451 122706584 -119957769 + MER34B LTR ERV1 220 351 -214 2072 98 14 3 chr1 122706584 122706870 -119957483 + AluSx SINE Alu 14 302 -10 526 238 90 84 chr1 122706870 122707080 -119957273 + MER34B LTR ERV1 351 565 0 625 339 67 25 chr1 122707177 122707622 -119956731 + L2 LINE L2 2849 3312 -1 205 340 113 0 chr1 122707621 122707762 -119956591 - L3 LINE CR1 -1226 351 195 * 279 0 0 0 chr1 122707773 122707804 -119956549 + (T)n Simple_repeat Simple_repeat 1 31 0 2143 93 0 4 chr1 122707852 122708130 -119956223 - AluSg SINE Alu -33 277 1 375 23 0 0 chr1 122708169 122708213 -119956140 + (TA)n Simple_repeat Simple_repeat 1 44 0 1811 127 8 0 chr1 122708284 122708543 -119955810 - AluSq SINE Alu -52 261 1 25 62 0 16 chr1 122708816 122708858 -119955495 + AT_rich Low_complexity Low_complexity 1 43 -20 522 146 227 18 chr1 122708858 122708968 -119955385 - FLAM_C SINE Alu 0 133 1 25 62 0 16 chr1 122708968 122708989 -119955364 + AT_rich Low_complexity Low_complexity 43 63 0 1464 160 157 0 chr1 122709031 122709299 -119955054 - AluJb SINE Alu -2 310 1 410 181 29 65 chr1 122709414 122709552 -119954801 + AluSc SINE Alu 1 133 -176 832 163 74 0 chr1 122710766 122710901 -119953452 + AluSq/x SINE Alu 1 145 -167 1805 84 42 0 chr1 122710901 122711140 -119953213 + AluSx SINE Alu 55 303 -9 1296 120 0 6 chr1 122711603 122711778 -119952575 - AluSp SINE Alu -139 174 1 2146 128 3 0 chr1 122711782 122712086 -119952267 - AluSg SINE Alu 0 310 6 442 244 110 7 chr1 122712220 122712373 -119951980 - MIR SINE MIR -57 205 38 2168 118 0 3 chr1 122712392 122712696 -119951657 + AluSq SINE Alu 1 303 -10 2212 90 21 0 chr1 122713165 122713453 -119950900 - AluSp SINE Alu -19 294 1 2447 43 0 7 chr1 122713482 122713762 -119950591 - AluSc SINE Alu -31 278 1 1952 112 0 8 chr1 122715027 122715294 -119949059 - AluSg1 SINE Alu -44 265 1 5243 121 10 6 chr1 122715294 122716592 -119947761 - L1M1 LINE L1 -521 5781 4475 2714 143 21 36 chr1 122716592 122716636 -119947717 + Tigger1 DNA MER2_type 1949 1992 -426 2031 139 0 0 chr1 122716636 122716916 -119947437 + AluSg SINE Alu 1 280 -30 315 0 0 0 chr1 122716919 122716954 -119947399 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2714 143 21 36 chr1 122716954 122717382 -119946971 + Tigger1 DNA MER2_type 1994 2418 0 545 42 56 0 chr1 122717384 122717455 -119946898 - MLT1B LTR MaLR -315 75 1 207 259 19 0 chr1 122717948 122718002 -119946351 - L2 LINE L2 -10 3262 3208 1007 256 121 65 chr1 122718454 122718981 -119945372 + MLT1K LTR MaLR 4 560 -28 2066 111 11 4 chr1 122719711 122720013 -119944340 - AluSg SINE Alu 0 304 1 298 259 152 0 chr1 122720795 122720907 -119943446 - MIR SINE MIR -31 231 103 1984 118 0 80 chr1 122722161 122722500 -119941853 - AluSx SINE Alu 0 312 1 573 293 50 0 chr1 122722525 122722706 -119941647 - MER91A DNA MER1_type -6 190 1 355 189 0 42 chr1 122723129 122723272 -119941081 + GA-rich Low_complexity Low_complexity 3 139 0 253 294 0 33 chr1 122723340 122723432 -119940921 - L2 LINE L2 -2 3311 3223 222 323 32 21 chr1 122723592 122723685 -119940668 - L2 LINE L2 -893 2421 2328 342 298 8 16 chr1 122723720 122723844 -119940509 + L2 LINE L2 3188 3310 -3 224 211 28 42 chr1 122723968 122724039 -119940314 + L2 LINE L2 3244 3313 0 31 26 0 0 chr1 122724077 122724115 -119940238 + AT_rich Low_complexity Low_complexity 1 38 0 367 169 15 0 chr1 122724847 122724912 -119939441 - MLT1-int LTR MaLR -1299 72 7 2057 164 109 8 chr1 122725326 122725711 -119938642 - MSTA LTR MaLR -2 426 3 9093 167 33 15 chr1 122725713 122727335 -119937018 - MSTA-int LTR MaLR 0 1651 1 2507 111 94 10 chr1 122727335 122727730 -119936623 - MSTA LTR MaLR 0 428 1 1533 86 5 5 chr1 122728030 122728227 -119936126 - AluSg/x SINE Alu -8 304 108 1660 120 4 8 chr1 122728227 122728477 -119935876 - AluSx SINE Alu -3 309 61 548 258 82 36 chr1 122728477 122728671 -119935682 + L1ME3A LINE L1 5947 6149 -21 2170 104 11 0 chr1 122728687 122728974 -119935379 - AluSq SINE Alu -23 290 1 2422 156 103 11 chr1 122728974 122729448 -119934905 - L1MC4 LINE L1 -205 7837 7320 2110 80 70 7 chr1 122729448 122729735 -119934618 - AluY SINE Alu -6 305 1 554 215 8 8 chr1 122729818 122729948 -119934405 - MIR SINE MIR -79 183 54 9052 176 19 25 chr1 122780002 122781017 -119883336 + L1 LINE L1 2425 3445 -2701 3113 71 11 47 chr1 122781017 122781163 -119883190 - MER57B LTR ERV1 0 434 284 2191 118 0 22 chr1 122781163 122781477 -119882876 + AluSx SINE Alu 4 310 -2 3113 71 11 47 chr1 122781477 122781780 -119882573 - MER57B LTR ERV1 -150 284 1 9052 176 19 25 chr1 122781780 122782847 -119881506 + L1 LINE L1 3445 4493 -1653 972 343 107 17 chr1 122782857 122783390 -119880963 + L1PA16 LINE L1 788 1368 -6206 267 316 5 54 chr1 122783416 122783621 -119880732 + L1PA16 LINE L1 2085 2306 -5268 13999 214 28 14 chr1 122784254 122785275 -119879078 + L1PA16 LINE L1 2185 3191 -4413 2578 56 0 0 chr1 122785275 122785577 -119878776 + AluY SINE Alu 1 302 -9 13999 214 28 14 chr1 122785577 122788133 -119876220 + L1PA16 LINE L1 3191 5784 -1820 2030 143 7 0 chr1 122788133 122788420 -119875933 - AluSx SINE Alu -23 289 1 13999 214 28 14 chr1 122788420 122789921 -119874432 + L1PA16 LINE L1 5784 7263 -341 1445 98 9 5 chr1 122789921 122790144 -119874209 + L1MA2 LINE L1 6080 6304 0 180 0 0 0 chr1 122790172 122790192 -119874161 + (GAA)n Simple_repeat Simple_repeat 2 21 0 2043 145 18 3 chr1 122790194 122790531 -119873822 + L1PA16 LINE L1 7259 7600 -4 4277 143 36 13 chr1 122790543 122791643 -119872710 + L1MA4A LINE L1 4477 5606 -697 779 146 0 49 chr1 122791644 122791774 -119872579 + AluJo SINE Alu 1 125 -187 186 43 0 0 chr1 122791774 122791797 -119872556 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 779 146 0 49 chr1 122791797 122791810 -119872543 + AluJo SINE Alu 125 137 -175 3745 117 15 31 chr1 122791810 122792385 -119871968 + L1MA4A LINE L1 5609 6174 -129 2164 121 0 16 chr1 122792385 122792700 -119871653 + AluSx SINE Alu 1 310 -2 3745 117 15 31 chr1 122792700 122792773 -119871580 + L1MA4A LINE L1 6174 6247 -56 327 282 276 0 chr1 122792778 122792941 -119871412 + MIR SINE MIR 55 262 0 333 247 25 106 chr1 122792969 122793085 -119871268 - L1MC4 LINE L1 -1 8041 7904 222 222 0 0 chr1 122793085 122793130 -119871223 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 333 247 25 106 chr1 122793130 122793204 -119871149 - L1MC4 LINE L1 -138 7904 7826 666 171 29 14 chr1 122793238 122793378 -119870975 - L1ME2 LINE L1 -10 6154 6013 868 200 89 67 chr1 122793459 122793580 -119870773 - L1ME2 LINE L1 -135 6029 5912 2471 181 44 11 chr1 122793580 122794033 -119870320 + MER70A LTR ERVL 1 468 -4 868 200 89 67 chr1 122794033 122794181 -119870172 - L1ME2 LINE L1 -252 5912 5754 29 28 0 0 chr1 122795185 122795221 -119869132 + AT_rich Low_complexity Low_complexity 1 36 0 207 315 19 0 chr1 122795811 122795865 -119868488 - L2 LINE L2 -86 3186 3132 404 290 91 34 chr1 122796141 122796322 -119868031 + MER20B DNA MER1_type 4 215 -4 477 213 66 15 chr1 122796900 122797036 -119867317 - L2 LINE L2 -10 3303 3161 390 260 154 60 chr1 122797555 122797939 -119866414 - LTR33 LTR ERVL 0 521 102 2342 92 3 0 chr1 122798240 122798532 -119865821 - AluY SINE Alu -18 293 1 193 247 200 0 chr1 122798754 122798839 -119865514 + L2 LINE L2 2862 2963 -309 217 255 0 0 chr1 122798974 122799021 -119865332 - L2 LINE L2 -4 3268 3222 * 443 314 184 10 chr1 122799006 122799315 -119865038 + L2 LINE L2 2904 3266 -6 279 294 63 79 chr1 122799330 122799372 -119864981 + L2 LINE L2 3143 3184 -88 5166 191 77 13 chr1 122799372 122799421 -119864932 - MER69B DNA AcHobo -1300 1226 1182 2119 106 7 13 chr1 122799421 122799723 -119864630 - AluSg SINE Alu -10 300 1 5166 191 77 13 chr1 122799723 122800825 -119863528 - MER69B DNA AcHobo -1344 1182 1 279 294 63 79 chr1 122800825 122800908 -119863445 + L2 LINE L2 3184 3266 -6 188 281 28 111 chr1 122801658 122801875 -119862478 + L2 LINE L2 3041 3239 -33 618 196 256 0 chr1 122801934 122802067 -119862286 + MER21B LTR ERV1 329 495 -368 * 866 199 34 65 chr1 122802062 122802324 -119862029 + MLT1B LTR MaLR 85 338 -52 400 246 63 16 chr1 122802366 122802435 -119861918 + MIR SINE MIR 1 65 -197 1491 227 121 24 chr1 122802435 122802897 -119861456 - MLT1J LTR MaLR -4 507 1 400 246 63 16 chr1 122802897 122802953 -119861400 + MIR SINE MIR 65 132 -130 592 291 23 6 chr1 122803087 122803259 -119861094 + MIR SINE MIR 38 212 -50 414 202 10 10 chr1 122804302 122804401 -119859952 + L1ME LINE L1 5721 5819 -302 354 178 0 0 chr1 122804912 122805002 -119859351 + (TA)n Simple_repeat Simple_repeat 1 90 0 203 319 56 0 chr1 122805731 122805803 -119858550 + MIR SINE MIR 40 115 -93 359 275 113 0 chr1 122805911 122806071 -119858282 + MIR SINE MIR 20 197 -65 2139 130 6 15 chr1 122806101 122806419 -119857934 - MLT1B LTR MaLR 0 390 76 2120 165 22 11 chr1 122806419 122806783 -119857570 + Tigger1 DNA MER2_type 1 368 -2050 427 150 0 0 chr1 122806783 122806843 -119857510 - Tigger2 DNA MER2_type -2658 60 1 3781 81 12 2 chr1 122806843 122807339 -119857014 + Tigger1 DNA MER2_type 1259 1759 -659 2010 118 10 3 chr1 122807382 122807687 -119856666 + LTR23 LTR ERV1 113 419 -18 1143 108 31 108 chr1 122807694 122807916 -119856437 + Tigger1 DNA MER2_type 1759 1963 -455 3803 77 12 4 chr1 122807926 122808435 -119855918 + LTR10D LTR ERV1 1 513 0 6288 118 11 18 chr1 122808435 122808514 -119855839 - L1MA1 LINE L1 -108 6194 6116 2459 94 3 0 chr1 122808514 122808822 -119855531 + AluSp SINE Alu 1 309 -4 6288 118 11 18 chr1 122808822 122809170 -119855183 - L1MA1 LINE L1 -186 6116 5767 2065 110 0 7 chr1 122809170 122809478 -119854875 - AluSg1 SINE Alu 0 306 1 6288 118 11 18 chr1 122809478 122810776 -119853577 - L1MA1 LINE L1 -535 5767 4475 2714 143 21 36 chr1 122810776 122810820 -119853533 + Tigger1 DNA MER2_type 1949 1992 -426 2053 136 0 0 chr1 122810820 122811100 -119853253 + AluSg SINE Alu 1 280 -30 450 0 0 0 chr1 122811103 122811153 -119853200 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 2714 143 21 36 chr1 122811153 122811581 -119852772 + Tigger1 DNA MER2_type 1994 2418 0 545 42 56 0 chr1 122811583 122811654 -119852699 - MLT1B LTR MaLR -315 75 1 207 259 19 0 chr1 122812146 122812200 -119852153 - L2 LINE L2 -10 3262 3208 1007 256 121 65 chr1 122812652 122813179 -119851174 + MLT1K LTR MaLR 4 560 -28 2066 111 11 4 chr1 122813909 122814211 -119850142 - AluSg SINE Alu 0 304 1 298 259 152 0 chr1 122814993 122815105 -119849248 - MIR SINE MIR -31 231 103 1987 114 0 88 chr1 122816429 122816771 -119847582 - AluSx SINE Alu 0 312 1 573 293 50 0 chr1 122816796 122816977 -119847376 - MER91A DNA MER1_type -6 190 1 355 189 0 42 chr1 122817400 122817543 -119846810 + GA-rich Low_complexity Low_complexity 3 139 0 253 294 0 33 chr1 122817611 122817703 -119846650 - L2 LINE L2 -2 3311 3223 222 323 32 21 chr1 122817863 122817956 -119846397 - L2 LINE L2 -893 2421 2328 342 298 8 16 chr1 122817991 122818115 -119846238 + L2 LINE L2 3188 3310 -3 224 211 28 42 chr1 122818239 122818310 -119846043 + L2 LINE L2 3244 3313 0 31 26 0 0 chr1 122818348 122818386 -119845967 + AT_rich Low_complexity Low_complexity 1 38 0 367 169 15 0 chr1 122819118 122819183 -119845170 - MLT1-int LTR MaLR -1299 72 7 2069 161 109 8 chr1 122819598 122819983 -119844370 - MSTA LTR MaLR -2 426 3 9084 167 33 15 chr1 122819985 122821607 -119842746 - MSTA-int LTR MaLR 0 1651 1 2481 114 94 10 chr1 122821607 122822002 -119842351 - MSTA LTR MaLR 0 428 1 422 342 40 5 chr1 122822648 122822870 -119841483 + MIR SINE MIR 24 253 -9 2042 188 102 67 chr1 122823453 122824033 -119840320 + LTR36 LTR ERV1 1 600 -11 491 164 164 0 chr1 122824182 122824292 -119840061 - Charlie4 DNA MER1_type 0 1961 1834 246 289 39 10 chr1 122824429 122824533 -119839820 - L2 LINE L2 -336 2977 2871 668 121 0 10 chr1 122824596 122824695 -119839658 + MER4A LTR ERV1 1 98 -566 1890 127 175 37 chr1 122824695 122825050 -119839303 + MER4A LTR ERV1 261 664 0 225 0 0 0 chr1 122825436 122825461 -119838892 + (T)n Simple_repeat Simple_repeat 1 25 0 324 365 42 0 chr1 122825752 122825919 -119838434 - MIR SINE MIR -3 259 86 2016 142 20 0 chr1 122825996 122826292 -119838061 + AluJb SINE Alu 1 302 -10 272 360 37 7 chr1 122826705 122826841 -119837512 + MIR SINE MIR 112 251 -11 240 260 39 0 chr1 122827500 122827577 -119836776 - HAL1b LINE L1 -17 1331 1252 246 143 0 0 chr1 122827668 122827717 -119836636 + LTR66 LTR ERVL 394 442 -168 2005 166 0 0 chr1 122827808 122828115 -119836238 - AluSx SINE Alu -3 309 3 255 277 11 11 chr1 122828239 122828333 -119836020 - L1P LINE L1 -1151 4995 4902 663 81 9 72 chr1 122828555 122828666 -119835687 + L1P4 LINE L1 5474 5577 -584 478 215 44 7 chr1 122828668 122828803 -119835550 + L1MB7 LINE L1 6033 6172 -12 334 241 27 0 chr1 122828848 122828960 -119835393 + GA-rich Low_complexity Low_complexity 2 116 0 2256 99 7 0 chr1 122829688 122829982 -119834371 + AluSg1 SINE Alu 1 296 -13 24 0 0 0 chr1 122830622 122830646 -119833707 + AT_rich Low_complexity Low_complexity 1 24 0 2510 70 3 0 chr1 122830682 122830982 -119833371 - AluSg SINE Alu -7 303 3 1640 157 14 55 chr1 122831004 122831208 -119833145 - AluJb SINE Alu 0 319 131 2296 98 0 3 chr1 122831208 122831495 -119832858 + AluSq SINE Alu 3 288 -25 1640 157 14 55 chr1 122831495 122831619 -119832734 - AluJb SINE Alu -188 131 3 1339 92 0 0 chr1 122832682 122832846 -119831507 - AluSp SINE Alu -18 295 132 22 0 0 0 chr1 122832853 122832875 -119831478 + AT_rich Low_complexity Low_complexity 1 22 0 800 222 23 0 chr1 122832924 122833100 -119831253 + MIR SINE MIR 12 191 -71 843 234 65 42 chr1 122833104 122833411 -119830942 - L2 LINE L2 0 3313 3000 238 173 147 40 chr1 122833391 122833466 -119830887 + MIR SINE MIR 177 259 -3 * 273 283 0 22 chr1 122834783 122834875 -119829478 + L1ME LINE L1 5573 5662 -459 923 216 0 0 chr1 122834946 122835108 -119829245 + FRAM SINE Alu 1 162 -4 195 129 0 0 chr1 122835108 122835139 -119829214 + (GGA)n Simple_repeat Simple_repeat 1 31 0 689 275 80 88 chr1 122835205 122835426 -119828927 + HAL1 LINE L1 2 223 -2284 743 157 0 37 chr1 122835426 122835560 -119828793 + FLAM_A SINE Alu 5 133 0 689 275 80 88 chr1 122835560 122835803 -119828550 + HAL1 LINE L1 223 462 -2045 254 250 26 0 chr1 122835872 122835948 -119828405 + L1ME4a LINE L1 6042 6119 -2 1858 125 48 3 chr1 122836464 122836753 -119827600 - AluJo SINE Alu -4 308 7 909 260 39 41 chr1 122838773 122839135 -119825218 + HAL1 LINE L1 1848 2208 -299 * 1596 174 58 56 chr1 122839082 122839462 -119824891 - L1MD2 LINE L1 -8 6234 5890 2249 103 7 0 chr1 122839462 122839753 -119824600 - AluSp SINE Alu -20 293 1 1596 174 58 56 chr1 122839753 122839850 -119824503 - L1MD2 LINE L1 -352 5890 5795 502 266 89 0 chr1 122839930 122840099 -119824254 - MIR SINE MIR -1 261 78 401 346 43 0 chr1 122841096 122841258 -119823095 - MIR SINE MIR -50 212 44 1832 213 130 81 chr1 122841260 122842078 -119822275 + L1MC5 LINE L1 7056 7913 -48 382 257 7 36 chr1 122842093 122842233 -119822120 - L2 LINE L2 -1230 2084 1949 233 318 23 0 chr1 122842761 122842849 -119821504 + CT-rich Low_complexity Low_complexity 2 91 0 423 98 0 0 chr1 122843604 122843665 -119820688 + (CA)n Simple_repeat Simple_repeat 1 61 0 323 275 201 13 chr1 122845350 122845499 -119818854 + MIR SINE MIR 9 185 -77 2049 94 18 7 chr1 122846386 122846696 -119817657 + AluSc SINE Alu 1 313 0 477 269 43 21 chr1 122847160 122847346 -119817007 + MER117 DNA MER1_type 3 192 -5 1740 45 0 5 chr1 122847428 122847628 -119816725 + L1PA7 LINE L1 5951 6149 -5 288 152 48 9 chr1 122847698 122847803 -119816550 + (TA)n Simple_repeat Simple_repeat 2 110 0 1342 236 127 78 chr1 122847818 122847890 -119816463 - MLT1G1 LTR MaLR 0 595 528 1166 37 0 15 chr1 122847890 122848026 -119816327 - L1PA7 LINE L1 -3 6151 6018 1342 236 127 78 chr1 122848026 122848520 -119815833 - MLT1G1 LTR MaLR -67 528 1 838 200 217 6 chr1 122848856 122849036 -119815317 - MER20 DNA MER1_type -1 218 1 1383 211 67 42 chr1 122850913 122851269 -119813084 + MLT2D LTR ERVL 2 366 -48 2435 147 28 25 chr1 122851664 122852059 -119812294 + MSTD LTR MaLR 1 396 0 329 278 165 0 chr1 122852365 122852480 -119811873 + L2 LINE L2 3139 3272 0 509 234 80 0 chr1 122854497 122854634 -119809719 + MER112 DNA MER1_type 2 149 -111 435 106 0 0 chr1 122854645 122854711 -119809642 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 363 197 0 14 chr1 122854731 122854802 -119809551 + MER112 DNA MER1_type 185 254 -6 318 221 221 20 chr1 122855095 122855299 -119809054 - MIR SINE MIR -1 261 17 2094 164 27 3 chr1 122855561 122855897 -119808456 - MER2 DNA MER2_type 0 344 1 943 222 279 0 chr1 122856285 122856604 -119807749 + L1MD3 LINE L1 6155 6333 0 256 155 0 69 chr1 122856604 122856662 -119807691 + MIR3 SINE MIR 144 197 -11 1168 121 0 17 chr1 122857232 122857405 -119806948 + AluY SINE Alu 127 296 -15 450 0 0 0 chr1 122857407 122857457 -119806896 + (TA)n Simple_repeat Simple_repeat 2 51 0 203 254 0 85 chr1 122857627 122857745 -119806608 + L2 LINE L2 3031 3138 -175 488 241 78 0 chr1 122857745 122857886 -119806467 - L1M4 LINE L1 -2143 4003 3852 1293 284 161 12 chr1 122857908 122858637 -119805716 - L2 LINE L2 -557 2757 1921 288 293 24 32 chr1 122860124 122860247 -119804106 - MER5B DNA MER1_type -2 176 55 396 0 0 0 chr1 122860247 122860291 -119804062 + (TG)n Simple_repeat Simple_repeat 1 44 0 1791 163 3 3 chr1 122860304 122860586 -119803767 - AluJb SINE Alu -30 282 1 369 96 0 0 chr1 122862616 122862668 -119801685 - Alu SINE Alu 0 302 251 2580 217 53 98 chr1 122862672 122864056 -119800297 - L1MC5 LINE L1 -184 7777 6447 6777 177 146 62 chr1 122864253 122864835 -119799518 - L1MC3 LINE L1 0 7808 7277 292 215 0 15 chr1 122864835 122864900 -119799453 - MLT1F1 LTR MaLR -459 108 45 6777 177 146 62 chr1 122864900 122866413 -119797940 - L1MC3 LINE L1 -531 7277 5330 2701 48 0 0 chr1 122866638 122866949 -119797404 + AluY SINE Alu 1 311 0 201 248 41 99 chr1 122866949 122867070 -119797283 - L2 LINE L2 -219 3053 2940 532 167 273 20 chr1 122867102 122867252 -119797101 + MIR SINE MIR 31 218 -44 1921 154 3 3 chr1 122867626 122867924 -119796429 + AluSx SINE Alu 1 298 -14 404 311 118 28 chr1 122869054 122869308 -119795045 + L3 LINE CR1 1196 1472 -105 * 1296 305 58 31 chr1 122869304 122869648 -119794705 + L2 LINE L2 2362 2695 -618 2346 106 0 0 chr1 122869648 122869959 -119794394 + AluSq SINE Alu 1 311 -2 1296 305 58 31 chr1 122869959 122870534 -119793819 + L2 LINE L2 2695 3313 0 199 297 66 22 chr1 122870534 122870625 -119793728 + L3 LINE CR1 1465 1559 -18 260 335 43 30 chr1 122871603 122871767 -119792586 + L2 LINE L2 1243 1408 -1906 844 271 70 0 chr1 122872029 122872351 -119792002 + L2 LINE L2 2697 3044 -269 1012 177 148 44 chr1 122872351 122872652 -119791701 - MER45C DNA AcHobo 0 953 313 794 212 153 32 chr1 122872687 122872876 -119791477 - MER45C DNA AcHobo -741 212 1 636 263 161 21 chr1 122872876 122873119 -119791234 + L2 LINE L2 3037 3313 0 472 302 92 85 chr1 122873680 122873975 -119790378 + L2 LINE L2 2971 3267 -5 294 200 42 0 chr1 122875131 122875226 -119789127 + (TA)n Simple_repeat Simple_repeat 1 99 0 2113 79 38 17 chr1 122875255 122875546 -119788807 - AluSp SINE Alu -16 297 1 1521 149 160 11 chr1 122875621 122875883 -119788470 - AluJb SINE Alu -1 301 1 2412 93 0 0 chr1 122876599 122876900 -119787453 + AluSg SINE Alu 1 301 -9 2711 149 23 2 chr1 122877035 122877465 -119786888 - L1PB1 LINE L1 -3 6148 5710 1774 142 0 72 chr1 122877476 122877794 -119786559 - AluJb SINE Alu -17 295 1 629 192 67 106 chr1 122877801 122878056 -119786297 - L1MC5 LINE L1 -182 7779 7535 4816 171 66 7 chr1 122878065 122878943 -119785410 - L1MD2 LINE L1 0 6359 5430 1189 243 104 83 chr1 122878989 122879249 -119785104 - L1ME4a LINE L1 -29 6092 5839 2446 76 0 7 chr1 122879249 122879553 -119784800 - AluY SINE Alu -9 302 1 1189 243 104 83 chr1 122879553 122880110 -119784243 - L1ME4a LINE L1 -282 5839 5258 609 344 102 45 chr1 122880196 122880597 -119783756 - L2 LINE L2 0 3272 2849 403 262 85 10 chr1 122882496 122882684 -119781669 - MIR SINE MIR -55 207 2 1507 151 0 0 chr1 122882901 122883119 -119781234 - AluJo SINE Alu -56 256 39 214 233 189 0 chr1 122883413 122883503 -119780850 - MIR SINE MIR -46 216 110 390 304 89 15 chr1 122884494 122884629 -119779724 + MIR SINE MIR 47 191 -71 741 245 127 21 chr1 122884673 122884910 -119779443 - MIR SINE MIR 0 262 1 293 358 117 21 chr1 122884915 122885446 -119778907 + L2 LINE L2 2283 2864 -450 456 332 128 45 chr1 122885710 122886547 -119777806 - L2 LINE L2 -9 3263 2375 214 289 0 0 chr1 122886684 122886736 -119777617 + L2 LINE L2 3211 3262 -10 503 238 27 60 chr1 122888024 122888209 -119776144 - MLT1K LTR MaLR -5 583 405 25 31 0 0 chr1 122888628 122888660 -119775693 + AT_rich Low_complexity Low_complexity 1 32 0 638 288 74 53 chr1 122889654 122890134 -119774219 - MLT1H LTR MaLR 0 549 21 1666 135 77 0 chr1 122890384 122890644 -119773709 + AluJb SINE Alu 10 289 -23 2253 101 0 10 chr1 122890668 122890996 -119773357 + AluSq SINE Alu 2 313 0 480 288 140 4 chr1 122891171 122891400 -119772953 - MIR SINE MIR 0 262 3 684 128 26 17 chr1 122893067 122893184 -119771169 + L1MB5 LINE L1 6057 6174 0 361 239 76 75 chr1 122893485 122893521 -119770832 + MIR SINE MIR 30 64 -198 1734 52 19 0 chr1 122893521 122893717 -119770636 + L1PA3 LINE L1 5942 6144 -11 403 21 0 0 chr1 122893717 122893764 -119770589 + (TAA)n Simple_repeat Simple_repeat 3 180 0 1734 52 19 0 chr1 122893764 122893777 -119770576 + L1PA3 LINE L1 6144 6155 0 361 239 76 75 chr1 122893777 122893952 -119770401 + MIR SINE MIR 64 252 -10 1198 231 55 7 chr1 122894157 122894465 -119769888 + MER58B DNA MER1_type 19 341 0 433 319 62 0 chr1 122894748 122894892 -119769461 + L2 LINE L2 2578 2730 -584 344 274 193 7 chr1 122895038 122895173 -119769180 + MLT1H LTR MaLR 195 354 -195 379 208 31 31 chr1 122895230 122895326 -119769027 + MLT1H LTR MaLR 454 549 0 245 195 67 134 chr1 122895604 122895753 -119768600 - MER112 DNA MER1_type -1 259 121 201 289 67 58 chr1 122895963 122896226 -119768127 + L2 LINE L2 2818 3050 -222 395 296 57 50 chr1 122896348 122896507 -119767846 + L2 LINE L2 3073 3232 -40 208 114 0 29 chr1 122897398 122897433 -119766920 + L2 LINE L2 3208 3241 -31 241 290 16 0 chr1 122897574 122897636 -119766717 + GA-rich Low_complexity Low_complexity 2 64 0 217 267 0 0 chr1 122898595 122898640 -119765713 + (CA)n Simple_repeat Simple_repeat 1 45 0 2601 17 0 3 chr1 122899378 122899673 -119764680 + AluY SINE Alu 1 294 -17 2060 120 0 3 chr1 122899795 122900079 -119764274 + AluSx SINE Alu 1 283 -29 317 315 11 0 chr1 122900682 122900771 -119763582 - L2 LINE L2 -1 3271 3182 1282 155 97 3 chr1 122900771 122901061 -119763292 + L1MA8 LINE L1 5973 6289 -2 1961 122 40 0 chr1 122901095 122901373 -119762980 - AluSx SINE Alu -23 289 1 718 174 192 0 chr1 122901414 122901586 -119762767 + L1MA9 LINE L1 6059 6263 -49 266 217 0 24 chr1 122902738 122902821 -119761532 + L1MDa LINE L1 1287 1367 -5173 310 325 50 67 chr1 122902850 122903090 -119761263 + HAL1 LINE L1 1102 1337 -1170 731 257 31 5 chr1 122903111 122903368 -119760985 + L2 LINE L2 2796 3053 -260 552 286 66 11 chr1 122903643 122903825 -119760528 - MIR3 SINE MIR 0 208 17 186 167 0 0 chr1 122904430 122904466 -119759887 + (CATA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr1 122904953 122904981 -119759372 + AT_rich Low_complexity Low_complexity 1 28 0 2141 231 98 25 chr1 122905077 122905630 -119758723 + MLT1E LTR MaLR 1 593 0 391 313 126 6 chr1 122905709 122905891 -119758462 + MIR SINE MIR 56 259 -3 665 258 43 0 chr1 122906778 122906941 -119757412 + MIR SINE MIR 38 207 -55 464 255 304 5 chr1 122907148 122907332 -119757021 - MIR SINE MIR -1 261 23 453 260 77 18 chr1 122908372 122908541 -119755812 + L3 LINE CR1 1362 1540 -37 308 228 1 0 chr1 122908597 122908681 -119755672 + MLT1J LTR MaLR 62 184 -308 2800 151 104 15 chr1 122908731 122909326 -119755027 + L1MB7 LINE L1 5518 6165 -19 234 0 0 0 chr1 122910110 122910136 -119754217 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3773 25 0 2 chr1 122910136 122910578 -119753775 - L1PA4 LINE L1 -11 6144 5704 1543 178 46 9 chr1 122912346 122912672 -119751681 - MER44D DNA MER2_type -1 608 1 297 0 0 0 chr1 122913865 122913898 -119750455 + (TG)n Simple_repeat Simple_repeat 1 33 0 228 35 0 0 chr1 122913897 122913926 -119750427 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 56 55 0 0 chr1 122914152 122914243 -119750110 + AT_rich Low_complexity Low_complexity 1 91 0 1963 132 27 0 chr1 122914546 122914841 -119749512 - AluSx SINE Alu -9 303 1 21138 130 20 52 chr1 122915444 122916811 -119747542 + L1 LINE L1 16 1426 -6139 2276 99 0 0 chr1 122916811 122917103 -119747250 + AluSx SINE Alu 19 310 -2 21138 130 20 52 chr1 122917103 122918902 -119745451 + L1 LINE L1 1426 3281 -4284 2206 121 0 19 chr1 122918902 122919216 -119745137 + AluSg SINE Alu 1 308 -2 21138 130 20 52 chr1 122919216 122919288 -119745065 + L1 LINE L1 3281 3354 -4211 2188 138 3 0 chr1 122919288 122919592 -119744761 + AluSq SINE Alu 1 305 -8 21138 130 20 52 chr1 122919592 122920573 -119743780 + L1 LINE L1 3354 4124 -3441 5309 148 23 8 chr1 122920574 122921625 -119742728 + L1 LINE L1 5669 6735 -830 1272 107 5 0 chr1 122921639 122921844 -119742509 + L1MA3 LINE L1 6100 6305 0 562 258 21 11 chr1 122922002 122922188 -119742165 + L1ME LINE L1 5615 5802 -368 1326 108 0 0 chr1 122922202 122922378 -119741975 - AluSc SINE Alu -8 301 126 2843 112 6 29 chr1 122922380 122922871 -119741482 + L1MA3 LINE L1 5304 5783 -522 7020 50 9 10 chr1 122922871 122924418 -119739935 + L1PA6 LINE L1 4603 6149 -5 3279 108 23 2 chr1 122924418 122924936 -119739417 + L1MA3 LINE L1 5767 6305 0 21 0 0 0 chr1 122924936 122924957 -119739396 + AT_rich Low_complexity Low_complexity 1 21 0 208 164 30 0 chr1 122925177 122925244 -119739109 + (TA)n Simple_repeat Simple_repeat 1 69 0 1512 103 17 0 chr1 122925266 122925499 -119738854 + L1MA3 LINE L1 5827 6063 -242 233 303 0 30 chr1 122925511 122925577 -119738776 - MIR SINE MIR -114 148 85 249 98 0 0 chr1 122926178 122926219 -119738134 + (TG)n Simple_repeat Simple_repeat 2 42 0 1002 222 82 0 chr1 122927273 122927480 -119736873 - MER58A DNA MER1_type 0 224 1 323 307 64 21 chr1 122927495 122927635 -119736718 - L3 LINE CR1 -125 1452 1307 * 1222 311 72 23 chr1 122927601 122928319 -119736034 + L2 LINE L2 2568 3311 -2 258 339 18 9 chr1 122928325 122928437 -119735916 - L3 LINE CR1 -254 1323 1211 803 277 21 68 chr1 122928662 122929001 -119735352 + LTR67 LTR ERVL 1 323 -234 641 216 29 41 chr1 122929006 122929177 -119735176 + L2 LINE L2 3142 3310 -3 2225 113 0 0 chr1 122929192 122929492 -119734861 - AluSx SINE Alu -12 300 1 304 318 152 15 chr1 122929493 122929625 -119734728 + L1ME LINE L1 5436 5585 -2223 408 252 0 0 chr1 122929673 122929792 -119734561 + L1ME LINE L1 5690 5808 -313 509 162 40 10 chr1 122930073 122930172 -119734181 - AluJ SINE Alu -44 268 167 733 118 29 191 chr1 122930245 122930449 -119733904 - AluJ SINE Alu -141 171 1 417 301 77 27 chr1 122930533 122930938 -119733415 + L1ME4a LINE L1 5504 5928 -193 204 328 96 35 chr1 122931521 122931750 -119732603 + L2 LINE L2 2828 3070 -202 405 302 47 41 chr1 122931781 122931953 -119732400 - MIR SINE MIR -45 217 45 13869 143 25 4 chr1 122932090 122934385 -119729968 - L1M1 LINE L1 -5206 2359 18 554 178 59 8 chr1 122934385 122934503 -119729850 + MER89 LTR ERV1 432 555 -4 600 254 35 23 chr1 122934963 122935136 -119729217 - MER45A DNA AcHobo -3 175 1 1049 218 110 25 chr1 122936095 122936248 -119728105 + MER2 DNA MER2_type 1 140 -205 1859 167 0 17 chr1 122936248 122936560 -119727793 + AluJb SINE Alu 1 307 0 1049 218 110 25 chr1 122936560 122936722 -119727631 + MER2 DNA MER2_type 140 344 -1 436 228 171 6 chr1 122937054 122937212 -119727141 - MIR SINE MIR 0 262 79 263 309 12 12 chr1 122937220 122937301 -119727052 - MIR SINE MIR -107 101 21 233 250 0 56 chr1 122937309 122937381 -119726972 - L2 LINE L2 -12 3260 3193 1923 122 4 4 chr1 122937404 122937674 -119726679 + AluSx SINE Alu 1 270 -42 403 285 134 11 chr1 122937860 122938046 -119726307 + MIR SINE MIR 20 228 -34 276 311 66 93 chr1 122938188 122938522 -119725831 + L2 LINE L2 2948 3272 0 403 266 39 0 chr1 122940124 122940252 -119724101 + L1ME LINE L1 5691 5823 -298 15330 122 17 13 chr1 122940289 122941095 -119723258 - Tigger1 DNA MER2_type 0 2418 1617 2315 83 10 0 chr1 122941095 122941395 -119722958 - AluSp SINE Alu -9 304 2 15330 122 17 13 chr1 122941395 122942996 -119721357 - Tigger1 DNA MER2_type -801 1617 1 2282 99 3 13 chr1 122943182 122943484 -119720869 - AluSp SINE Alu -14 299 1 444 37 0 0 chr1 122944443 122944497 -119719856 + (TG)n Simple_repeat Simple_repeat 2 55 0 324 253 0 13 chr1 122944500 122944575 -119719778 + L2 LINE L2 3195 3268 -4 314 146 0 0 chr1 122944614 122944669 -119719684 + AluSx SINE Alu 245 299 -3 4399 170 50 14 chr1 122944670 122945539 -119718814 + L1MB2 LINE L1 5236 6135 -36 360 375 52 48 chr1 122946571 122946840 -119717513 - L2 LINE L2 -26 3246 2977 27743 32 1 2 chr1 122946844 122951027 -119713326 + L1HS LINE L1 1979 6155 0 7235 40 8 0 chr1 122951029 122952050 -119712303 + L1PA4 LINE L1 5128 6155 0 233 319 92 14 chr1 122952065 122952206 -119712147 - L2 LINE L2 -317 2955 2804 2005 105 62 0 chr1 122952354 122952630 -119711723 - AluSg SINE Alu -7 303 11 1714 158 10 39 chr1 122952682 122952992 -119711361 - AluJo SINE Alu -11 301 1 297 291 0 13 chr1 122953353 122953432 -119710921 + MIR SINE MIR 1 78 -184 450 0 0 0 chr1 122953762 122953812 -119710541 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 843 69 0 0 chr1 122954149 122954251 -119710102 + AluSg/x SINE Alu 133 234 -76 387 251 129 12 chr1 122954252 122954415 -119709938 + MIR SINE MIR 50 231 -31 214 350 59 59 chr1 122954489 122954743 -119709610 - L2 LINE L2 -455 2859 2606 2501 52 3 13 chr1 122954743 122955052 -119709301 - AluY SINE Alu -5 306 1 288 344 11 0 chr1 122956171 122956261 -119708092 - L2 LINE L2 -36 3236 3146 1218 178 81 34 chr1 122957454 122957775 -119706578 + MER44D DNA MER2_type 1 606 -3 3325 141 19 2 chr1 122958441 122959010 -119705343 - L1MD3 LINE L1 0 7995 7417 332 159 29 58 chr1 122959015 122959084 -119705269 - MLT1F1 LTR MaLR -433 134 68 1934 147 10 3 chr1 122959961 122960267 -119704086 + AluJb SINE Alu 1 308 -4 234 0 0 0 chr1 122960302 122960328 -119704025 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1433 161 3 112 chr1 122960335 122960658 -119703695 - AluJo SINE Alu -24 288 1 208 346 39 65 chr1 122960847 122961156 -119703197 - L2 LINE L2 -556 2758 2458 833 219 127 0 chr1 122961771 122961976 -119702377 - MIR SINE MIR -19 243 13 222 62 0 0 chr1 122962793 122962825 -119701528 + (CA)n Simple_repeat Simple_repeat 2 33 0 1538 210 7 3 chr1 122963286 122963417 -119700936 + AluJo SINE Alu 1 130 -182 185 0 40 0 chr1 122963417 122963442 -119700911 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1538 210 7 3 chr1 122963442 122963600 -119700753 + AluJo SINE Alu 130 291 -21 298 179 0 0 chr1 122963600 122963656 -119700697 + Alu SINE Alu 245 300 -2 2285 115 0 3 chr1 122963656 122963970 -119700383 + AluSq SINE Alu 1 313 0 553 238 146 12 chr1 122964190 122964354 -119699999 + MER5A DNA MER1_type 1 186 -3 216 268 110 24 chr1 122964382 122964464 -119699889 + MER5A DNA MER1_type 44 132 -57 1710 119 0 0 chr1 122964466 122964709 -119699644 + MER9 LTR ERVK 1 243 -268 9165 36 1 5 chr1 122964709 122965869 -119698484 - L1P1 LINE L1 -2382 3764 2610 * 13758 17 0 0 chr1 122965825 122967780 -119696573 + L1P1 LINE L1 3791 5745 -410 393 214 0 36 chr1 122967929 122968097 -119696256 + (TTAA)n Simple_repeat Simple_repeat 4 165 0 32 57 0 0 chr1 122969298 122969351 -119695002 + AT_rich Low_complexity Low_complexity 1 53 0 15681 61 2 4 chr1 122969387 122972206 -119692147 + L1PA6 LINE L1 3331 6153 -1 263 239 14 0 chr1 122972551 122972622 -119691731 + (CCA)n Simple_repeat Simple_repeat 1 72 0 261 0 0 0 chr1 122973553 122973582 -119690771 + (CA)n Simple_repeat Simple_repeat 1 29 0 2197 107 13 0 chr1 122973807 122974105 -119690248 - AluSp SINE Alu -11 302 1 692 109 118 42 chr1 122974159 122974278 -119690075 + FLAM_C SINE Alu 1 128 -5 548 170 123 0 chr1 122974970 122975076 -119689277 + L1MB7 LINE L1 5969 6087 -97 2199 112 0 3 chr1 122975076 122975371 -119688982 - AluSx SINE Alu -18 294 1 1360 216 109 17 chr1 122975408 122975765 -119688588 + MSTD LTR MaLR 1 390 -6 1592 188 39 3 chr1 122975771 122976107 -119688246 - L1MB3 LINE L1 -11 6172 5825 14768 135 29 11 chr1 122976107 122977331 -119687022 - L1M4 LINE L1 -3704 2678 1477 1284 199 48 62 chr1 122977331 122977623 -119686730 - AluJo SINE Alu -24 288 1 14768 135 29 11 chr1 122977623 122979013 -119685340 - L1M4 LINE L1 -4905 1477 17 546 152 0 0 chr1 122979013 122979105 -119685248 + L1MB7 LINE L1 6074 6165 -19 25 31 0 0 chr1 122979772 122979804 -119684549 + AT_rich Low_complexity Low_complexity 1 32 0 427 102 0 0 chr1 122980188 122980247 -119684106 + FRAM/FAM SINE Alu 20 78 -98 193 56 28 28 chr1 122980248 122980284 -119684069 + (TA)n Simple_repeat Simple_repeat 1 36 0 237 179 64 26 chr1 122980320 122980398 -119683955 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 181 255 78 0 chr1 122982356 122982407 -119681946 - L2 LINE L2 -657 2657 2603 225 226 43 97 chr1 122982582 122982675 -119681678 + MLT1L LTR MaLR 508 595 -20 591 294 51 21 chr1 122982725 122982960 -119681393 - MIR SINE MIR -4 258 17 329 258 174 30 chr1 122983002 122983134 -119681219 + MIR SINE MIR 1 151 -111 246 277 161 96 chr1 122983342 122983591 -119680762 - L2 LINE L2 -98 3174 2910 3089 173 30 4 chr1 122983596 122984121 -119680232 + MER44D DNA MER2_type 1 539 -166 1736 165 201 6 chr1 122984121 122984479 -119679874 + MSTB1 LTR MaLR 1 428 -4 1412 131 0 0 chr1 122984483 122984682 -119679671 + MER44D DNA MER2_type 535 605 0 316 182 0 18 chr1 122984752 122984807 -119679546 + FLAM SINE Alu 61 114 -19 722 153 0 8 chr1 122984850 122984968 -119679385 + FLAM_A SINE Alu 1 117 -16 1188 119 7 20 chr1 122984976 122985267 -119679086 + (GAA)n Simple_repeat Simple_repeat 2 288 0 36 23 0 0 chr1 122985710 122985753 -119678600 + AT_rich Low_complexity Low_complexity 1 43 0 2374 80 0 3 chr1 122985829 122986131 -119678222 + AluY SINE Alu 1 301 -10 216 353 0 0 chr1 122987698 122987749 -119676604 - L2 LINE L2 -12 3260 3210 352 202 183 39 chr1 122988103 122988207 -119676146 + L2 LINE L2 3186 3304 -9 269 278 14 14 chr1 122988424 122988496 -119675857 - L2 LINE L2 -5 3308 3237 826 151 0 0 chr1 122988536 122988655 -119675698 - FLAM_C SINE Alu -24 119 1 496 231 129 20 chr1 122988655 122988802 -119675551 - MLT1H LTR MaLR -2 547 385 420 136 0 25 chr1 122988843 122988924 -119675429 - LTR41 LTR ERVL -694 79 1 352 242 40 16 chr1 122989761 122989885 -119674468 + L1ME LINE L1 5339 5465 -699 769 164 33 0 chr1 122989919 122990041 -119674312 - FLAM_C SINE Alu -16 127 2 293 243 126 19 chr1 122990307 122990410 -119673943 + FLAM_A SINE Alu 20 133 0 769 220 163 18 chr1 122990501 122990728 -119673625 + MIR SINE MIR 3 262 0 568 298 102 23 chr1 122990729 122991560 -119672793 - L1 LINE L1 -1135 5011 4124 943 213 0 16 chr1 122991640 122991823 -119672530 - AluJo SINE Alu -45 267 88 279 292 46 0 chr1 122992616 122992681 -119671672 - L2 LINE L2 -1 3271 3204 4280 106 19 5 chr1 122993037 122993662 -119670691 + MER51A LTR ERV1 1 634 0 431 247 129 17 chr1 122993747 122993925 -119670428 + L1M4 LINE L1 4621 4818 -1328 613 191 24 16 chr1 122993925 122994051 -119670302 + Charlie5 DNA MER1_type 1 127 -2485 * 1543 180 42 37 chr1 122994048 122994431 -119669922 + Charlie5 DNA MER1_type 2234 2618 0 889 257 70 33 chr1 122994471 122994868 -119669485 + L1M4 LINE L1 4813 5224 -922 28 0 0 0 chr1 122995155 122995183 -119669170 + AT_rich Low_complexity Low_complexity 1 28 0 1853 235 95 27 chr1 122995191 122995905 -119668448 + L1MDb LINE L1 7 884 -5525 228 236 0 56 chr1 122995914 122996003 -119668350 + (TA)n Simple_repeat Simple_repeat 2 85 0 2564 235 34 10 chr1 122996003 122996740 -119667613 + L1MDb LINE L1 2349 3105 -3301 472 195 35 95 chr1 122996852 122996938 -119667415 + L1MDb LINE L1 3756 3829 -2577 2246 78 0 78 chr1 122996938 122997259 -119667094 - AluSq SINE Alu -15 298 3 472 195 35 95 chr1 122997259 122997341 -119667012 + L1MDb LINE L1 3829 3914 -2492 1785 152 87 117 chr1 122997345 122997840 -119666513 + L1MD2 LINE L1 5664 6143 -216 2451 191 167 147 chr1 122997840 122998542 -119665811 + MER52A LTR ERV1 1 687 -1068 2308 91 0 0 chr1 122998542 122998840 -119665513 + AluY SINE Alu 1 298 -13 2451 191 167 147 chr1 122998840 122999795 -119664558 + MER52A LTR ERV1 687 1755 0 940 169 61 19 chr1 122999796 123000009 -119664344 + L1MD2 LINE L1 6137 6358 -1 781 241 70 27 chr1 123001839 123002096 -119662257 - L3 LINE CR1 -3 1574 1307 1794 151 104 0 chr1 123002098 123002415 -119661938 + MLT1D LTR MaLR 153 502 -3 323 264 200 13 chr1 123004251 123004406 -119659947 - L2 LINE L2 -7 3306 3123 642 128 0 0 chr1 123004599 123004693 -119659660 + FRAM SINE Alu 65 158 -18 586 228 31 18 chr1 123004849 123005019 -119659334 + L1ME1 LINE L1 6006 6184 0 27 62 0 0 chr1 123005045 123005093 -119659260 + AT_rich Low_complexity Low_complexity 1 48 0 321 26 0 0 chr1 123007116 123007154 -119657199 + (CA)n Simple_repeat Simple_repeat 2 39 0 25 0 0 0 chr1 123008158 123008183 -119656170 + AT_rich Low_complexity Low_complexity 1 25 0 236 216 0 39 chr1 123008514 123008565 -119655788 - MIR SINE MIR -212 50 2 787 178 56 86 chr1 123009059 123009162 -119655191 + MIR SINE MIR 71 167 -95 2143 52 4 7 chr1 123009162 123009433 -119654920 - L1PA7 LINE L1 -3 6151 5882 787 178 56 86 chr1 123009433 123009526 -119654827 + MIR SINE MIR 167 261 -1 453 325 121 64 chr1 123010048 123010573 -119653780 + L2 LINE L2 2715 3270 -2 2448 64 0 46 chr1 123010603 123010929 -119653424 - AluY SINE Alu 0 311 1 268 262 215 13 chr1 123011128 123011365 -119652988 + L1M4 LINE L1 3670 3954 -2192 828 316 142 25 chr1 123012245 123013092 -119651261 - L2 LINE L2 -24 3289 2338 3341 176 79 25 chr1 123013092 123013170 -119651183 - Looper DNA T2_type 0 1558 1486 1423 163 0 131 chr1 123013170 123013514 -119650839 - AluJo SINE Alu 0 302 4 3341 176 79 25 chr1 123013514 123014442 -119649911 - Looper DNA T2_type -72 1486 406 9925 171 26 1 chr1 123014442 123015192 -119649161 + L1PA14 LINE L1 3495 4225 -1936 2507 76 0 0 chr1 123015192 123015494 -119648859 + AluY SINE Alu 1 302 -9 9925 171 26 1 chr1 123015494 123017383 -119646970 + L1PA14 LINE L1 4225 6158 -3 3341 176 79 25 chr1 123017383 123017813 -119646540 - Looper DNA T2_type -1152 406 1 1317 286 117 13 chr1 123017814 123018352 -119646001 - L2 LINE L2 -974 2340 1747 15337 172 33 7 chr1 123018528 123022202 -119642151 - L1MA4 LINE L1 0 7719 3905 1767 189 0 7 chr1 123022202 123022499 -119641854 - AluJo SINE Alu -17 295 1 15337 172 33 7 chr1 123022499 123023107 -119641246 - L1MA4 LINE L1 -3814 3905 3315 403 176 59 0 chr1 123023119 123023204 -119641149 + MER3 DNA MER1_type 120 209 0 972 151 114 52 chr1 123023253 123023525 -119640828 + MER3 DNA MER1_type 2335 2623 0 194 316 200 0 chr1 123023534 123023629 -119640724 + L2 LINE L2 3198 3311 -2 534 269 88 18 chr1 123023804 123023975 -119640378 - MIR SINE MIR -73 189 7 518 196 90 130 chr1 123024874 123025175 -119639178 - MLT1J LTR MaLR -106 405 117 1898 166 35 25 chr1 123025175 123025572 -119638781 - L1MA9 LINE L1 -126 7605 7205 884 205 39 5 chr1 123025571 123025776 -119638577 - L1MA9 LINE L1 -982 6583 6372 * 1781 200 37 7 chr1 123025774 123026179 -119638174 + L1 LINE L1 2618 3034 -3112 2113 140 45 6 chr1 123026185 123026543 -119637810 - Tigger3b DNA MER2_type -858 373 2 1775 220 55 62 chr1 123026544 123026869 -119637484 - L1MA9 LINE L1 -3614 3951 3625 1938 33 0 0 chr1 123026869 123027084 -119637269 - AluY SINE Alu -14 297 83 1775 220 55 62 chr1 123027084 123027326 -119637027 - L1MA9 LINE L1 -3940 3625 3383 267 31 0 0 chr1 123027326 123027358 -119636995 + (TG)n Simple_repeat Simple_repeat 2 33 0 1775 220 55 62 chr1 123027358 123027399 -119636954 - L1MA9 LINE L1 -4182 3383 3343 225 0 0 0 chr1 123027399 123027424 -119636929 + (TG)n Simple_repeat Simple_repeat 2 26 0 1775 220 55 62 chr1 123027424 123027923 -119636430 - L1MA9 LINE L1 -4222 3343 2840 37512 84 12 8 chr1 123027927 123034057 -119630296 - L1PA6 LINE L1 -2 6152 3 2836 210 24 24 chr1 123034063 123035221 -119629132 - L1M2 LINE L1 -4387 2720 1568 1398 198 25 14 chr1 123035225 123035508 -119628845 - L1M2 LINE L1 -6742 288 3 873 224 11 6 chr1 123036397 123036580 -119627773 - MLT1D LTR MaLR 0 505 322 207 213 0 21 chr1 123036597 123036644 -119627709 + CT-rich Low_complexity Low_complexity 1 46 0 36 62 0 0 chr1 123036706 123036770 -119627583 + AT_rich Low_complexity Low_complexity 1 64 0 1434 194 95 11 chr1 123037028 123037301 -119627052 - AluJo SINE Alu -16 296 1 198 0 0 0 chr1 123037310 123037332 -119627021 + (T)n Simple_repeat Simple_repeat 1 22 0 1778 175 0 10 chr1 123037477 123037769 -119626584 - AluJb SINE Alu -19 293 5 1397 195 78 29 chr1 123037937 123038285 -119626068 + MLT1A1 LTR MaLR 1 365 0 396 217 108 59 chr1 123038429 123038558 -119625795 - L1MC4 LINE L1 -1 8041 7897 207 0 0 0 chr1 123038558 123038581 -119625772 + (TG)n Simple_repeat Simple_repeat 2 24 0 396 217 108 59 chr1 123038581 123038654 -119625699 - L1MC4 LINE L1 -145 7897 7829 2628 97 3 3 chr1 123038917 123039287 -119625066 - L1PB1 LINE L1 0 6151 5782 21 0 0 0 chr1 123039653 123039674 -119624679 + AT_rich Low_complexity Low_complexity 1 21 0 260 286 156 47 chr1 123040483 123040675 -119623678 - L2 LINE L2 -565 2749 2537 25 0 0 0 chr1 123041359 123041384 -119622969 + AT_rich Low_complexity Low_complexity 1 25 0 392 324 39 67 chr1 123041451 123041781 -119622572 - L2 LINE L2 -783 2531 2211 357 336 2 7 chr1 123041784 123041921 -119622432 + L1MC/D LINE L1 5482 5618 -528 196 333 35 35 chr1 123042803 123042917 -119621436 - L2 LINE L2 -40 3273 3160 217 292 180 28 chr1 123043036 123043286 -119621067 - L2 LINE L2 -353 2961 2674 192 77 0 0 chr1 123043728 123043754 -119620599 + (A)n Simple_repeat Simple_repeat 1 26 0 2278 165 5 2 chr1 123043924 123044317 -119620036 - L1PA15 LINE L1 -3 6162 5769 204 200 0 0 chr1 123045776 123045816 -119618537 + C-rich Low_complexity Low_complexity 2 41 0 555 219 167 5 chr1 123045869 123046061 -119618292 + L1MC4a LINE L1 5319 5541 -2267 2023 230 58 32 chr1 123046064 123046568 -119617785 + MER97c DNA MER1_type? 1 517 -573 1961 149 16 3 chr1 123046581 123046889 -119617464 - AluJb SINE Alu 0 312 1 1672 104 52 4 chr1 123046912 123047182 -119617171 - L1PA15 LINE L1 -1 6164 5882 556 279 0 25 chr1 123047668 123047869 -119616484 + MER97c DNA MER1_type? 894 1089 -1 1728 207 17 8 chr1 123047932 123048294 -119616059 + MLT1A1 LTR MaLR 1 365 0 595 278 103 49 chr1 123048319 123048786 -119615567 + L1MC4a LINE L1 5978 6469 -1339 263 226 235 0 chr1 123048800 123048902 -119615451 + L1MC4 LINE L1 7102 7227 -815 748 282 87 47 chr1 123049027 123049672 -119614681 + L1MC5 LINE L1 7261 7931 -30 352 310 125 28 chr1 123050066 123050385 -119613968 + L2 LINE L2 2151 2500 -814 1154 229 12 12 chr1 123050426 123050675 -119613678 - MIR SINE MIR -10 252 4 654 335 79 49 chr1 123050682 123051245 -119613108 + L2 LINE L2 2499 3095 -177 2013 115 4 0 chr1 123051500 123051792 -119612561 - AluSc SINE Alu 0 305 13 25 0 0 0 chr1 123051894 123051919 -119612434 + AT_rich Low_complexity Low_complexity 1 25 0 24 77 0 0 chr1 123051928 123051980 -119612373 + AT_rich Low_complexity Low_complexity 1 52 0 579 239 111 103 chr1 123052088 123052330 -119612023 + L1MC4 LINE L1 7524 7763 -279 2375 125 28 19 chr1 123052330 123052691 -119611662 - THE1B LTR MaLR 0 364 1 11493 95 13 0 chr1 123052691 123054251 -119610102 - THE1B-int LTR MaLR 0 1580 1 2155 128 70 14 chr1 123054251 123054596 -119609757 - THE1B LTR MaLR 0 364 1 579 239 111 103 chr1 123054596 123054848 -119609505 + L1MC4 LINE L1 7762 8024 -18 669 227 98 12 chr1 123054872 123055035 -119609318 - MIR SINE MIR -10 252 76 1929 155 10 0 chr1 123055122 123055419 -119608934 + AluSx SINE Alu 1 300 -12 2331 91 7 3 chr1 123055821 123056130 -119608223 + AluY SINE Alu 1 310 -1 2344 91 3 0 chr1 123056141 123056438 -119607915 + AluSx SINE Alu 1 298 -14 2011 149 10 0 chr1 123056626 123056928 -119607425 + AluSx SINE Alu 2 306 -6 21 0 0 0 chr1 123056945 123056966 -119607387 + AT_rich Low_complexity Low_complexity 1 21 0 388 329 58 7 chr1 123057097 123057234 -119607119 + L2 LINE L2 3162 3305 -8 22 35 0 0 chr1 123057325 123057354 -119606999 + AT_rich Low_complexity Low_complexity 1 29 0 2470 185 127 0 chr1 123057534 123058031 -119606322 + MER68 LTR ERV1 3 562 0 26 0 0 0 chr1 123058714 123058740 -119605613 + AT_rich Low_complexity Low_complexity 1 26 0 212 369 100 17 chr1 123059743 123059984 -119604369 - L2 LINE L2 -974 2340 2080 290 217 17 0 chr1 123060125 123060185 -119604168 + MER20 DNA MER1_type 7 67 -152 5104 137 92 98 chr1 123060194 123060783 -119603570 - L1MC3 LINE L1 -7 7778 7187 234 321 0 0 chr1 123060783 123060864 -119603489 - MLT1F1 LTR MaLR -446 121 41 5104 137 92 98 chr1 123060864 123061428 -119602925 - L1MC3 LINE L1 -598 7187 6552 664 176 73 15 chr1 123061473 123061609 -119602744 + MER20 DNA MER1_type 59 202 -17 701 272 45 49 chr1 123061802 123062045 -119602308 + MIR SINE MIR 11 252 -10 11822 28 3 1 chr1 123062737 123064911 -119599442 - L1PA3 LINE L1 0 6155 3980 1303 188 27 23 chr1 123065872 123066133 -119598220 + LTR10B LTR ERV1 286 547 0 186 103 0 0 chr1 123068146 123068175 -119596178 + (A)n Simple_repeat Simple_repeat 1 29 0 380 269 13 0 chr1 123069769 123069847 -119594506 - L2 LINE L2 0 3272 3194 3469 130 49 30 chr1 123070314 123070905 -119593448 + LTR36 LTR ERV1 10 611 0 312 244 56 0 chr1 123070905 123070995 -119593358 + MIR SINE MIR 166 260 -2 984 272 90 47 chr1 123071349 123071964 -119592389 + L2 LINE L2 2520 3148 -165 408 20 0 0 chr1 123071964 123072013 -119592340 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 222 365 35 9 chr1 123072258 123072373 -119591980 + L2 LINE L2 2179 2296 -1018 1017 281 77 21 chr1 123072687 123073319 -119591034 - L1MC/D LINE L1 -749 5397 5122 394 364 30 12 chr1 123073532 123073697 -119590656 - L3 LINE CR1 -7 1570 1403 513 92 0 0 chr1 123074192 123074268 -119590085 - AluSx SINE Alu -3 309 234 234 0 0 0 chr1 123074268 123074294 -119590059 + (T)n Simple_repeat Simple_repeat 1 26 0 42969 30 21 1 chr1 123074294 123080305 -119584048 - L1HS LINE L1 0 6155 22 1501 148 8 4 chr1 123080305 123080542 -119583811 - AluSx SINE Alu -66 246 9 1353 77 16 0 chr1 123081977 123082159 -119582194 + L1PB1 LINE L1 5967 6151 0 20419 177 35 15 chr1 123083010 123089321 -119575032 - L1PA13 LINE L1 -11 6803 330 22 80 0 0 chr1 123089852 123089902 -119574451 + AT_rich Low_complexity Low_complexity 1 50 0 872 78 78 0 chr1 123089983 123090111 -119574242 - MER85 DNA T2_type -1 138 1 813 174 19 32 chr1 123090515 123090670 -119573683 + AluJo SINE Alu 1 153 -159 * 1069 188 14 10 chr1 123090669 123090876 -119573477 + AluJo SINE Alu 95 302 -10 23 0 0 0 chr1 123091697 123091720 -119572633 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chr1 123091858 123091905 -119572448 + AT_rich Low_complexity Low_complexity 1 47 0 1413 190 9 0 chr1 123092716 123092948 -119571405 - AluJb SINE Alu -78 234 1 22 0 0 0 chr1 123093355 123093377 -119570976 + AT_rich Low_complexity Low_complexity 1 22 0 373 299 62 0 chr1 123094567 123094664 -119569689 + MIR SINE MIR 43 145 -63 785 307 160 20 chr1 123094844 123095460 -119568893 + L2 LINE L2 2361 3068 -245 577 189 61 53 chr1 123095547 123095679 -119568674 - FLAM_A SINE Alu 0 133 1 2060 145 0 28 chr1 123095836 123096154 -119568199 - AluJo SINE Alu -3 309 1 1822 141 33 16 chr1 123096808 123097113 -119567240 - AluJb SINE Alu -2 310 1 22 56 0 0 chr1 123097312 123097348 -119567005 + AT_rich Low_complexity Low_complexity 1 36 0 1095 165 96 4 chr1 123097704 123097964 -119566389 + MER63 DNA MER1_type 748 1031 -31 587 200 139 0 chr1 123098716 123098881 -119565472 - MER63 DNA MER1_type 0 1062 875 184 274 39 39 chr1 123100202 123100253 -119564100 + MIR SINE MIR 35 85 -177 274 222 123 0 chr1 123101147 123101228 -119563125 + MIR SINE MIR 81 171 -91 30 27 0 0 chr1 123102595 123102632 -119561721 + AT_rich Low_complexity Low_complexity 1 37 0 25 75 0 0 chr1 123102676 123102729 -119561624 + AT_rich Low_complexity Low_complexity 1 53 0 402 283 179 47 chr1 123102972 123103375 -119560978 + MLT1K LTR MaLR 133 588 0 331 271 82 25 chr1 123105499 123105621 -119558732 + L2 LINE L2 3144 3272 0 288 0 0 0 chr1 123105991 123106023 -119558330 + (CA)n Simple_repeat Simple_repeat 1 32 0 299 213 13 0 chr1 123106621 123106696 -119557657 + (TA)n Simple_repeat Simple_repeat 1 76 0 261 0 0 0 chr1 123107194 123107223 -119557130 + (A)n Simple_repeat Simple_repeat 1 29 0 331 320 77 77 chr1 123110999 123111530 -119552823 + L1M2 LINE L1 551 1081 -5768 229 290 0 0 chr1 123112142 123112211 -119552142 + C-rich Low_complexity Low_complexity 4 72 0 21 0 0 0 chr1 123112211 123112232 -119552121 + GC_rich Low_complexity Low_complexity 1 21 0 184 194 28 0 chr1 123112735 123112771 -119551582 - L2 LINE L2 0 3313 3277 268 261 18 0 chr1 123112828 123112906 -119551447 + MIR SINE MIR 80 161 -47 395 274 47 0 chr1 123112996 123113102 -119551251 - L2 LINE L2 -38 3234 3124 269 215 63 13 chr1 123113144 123113223 -119551130 + MIR SINE MIR 18 100 -162 273 296 111 37 chr1 123113313 123113475 -119550878 + L2 LINE L2 2914 3087 -185 281 135 469 0 chr1 123113623 123113719 -119550634 - LTR33 LTR ERVL 0 521 381 631 251 65 10 chr1 123113775 123113974 -119550379 - LTR33 LTR ERVL -240 281 72 916 291 69 14 chr1 123114181 123114713 -119549640 - MLT1L LTR MaLR 0 615 1 200 241 222 0 chr1 123114760 123114814 -119549539 + MIR SINE MIR 13 78 -184 583 235 45 8 chr1 123114815 123114947 -119549406 + MIR SINE MIR 55 191 -71 199 289 0 0 chr1 123115356 123115401 -119548952 + MIR3 SINE MIR 139 183 -25 2597 122 54 15 chr1 123115446 123115856 -119548497 - MSTB LTR MaLR 0 426 1 751 267 65 43 chr1 123115892 123116263 -119548090 - MLT1L LTR MaLR -235 380 2 2107 125 0 0 chr1 123116379 123116667 -119547686 + AluSx SINE Alu 1 288 -24 2295 111 0 0 chr1 123117475 123117772 -119546581 + AluSx SINE Alu 1 297 -15 214 291 47 0 chr1 123117968 123118054 -119546299 + L2 LINE L2 3160 3249 -64 182 227 240 27 chr1 123118102 123118177 -119546176 - L2 LINE L2 -68 3245 3155 2836 3 0 0 chr1 123118184 123118489 -119545864 + AluY SINE Alu 1 305 -6 1786 126 0 4 chr1 123118533 123118787 -119545566 + AluJb SINE Alu 46 298 -14 807 291 125 25 chr1 123118880 123119359 -119544994 - L2 LINE L2 -246 3067 2545 2158 134 3 8 chr1 123120093 123120451 -119543902 + MER47A DNA MER2_type 11 366 0 3814 117 45 29 chr1 123120517 123120652 -119543701 + L1MA7 LINE L1 5351 5482 -809 2040 150 3 13 chr1 123120652 123120965 -119543388 + AluJb SINE Alu 1 310 -2 3814 117 45 29 chr1 123120965 123121255 -119543098 + L1MA7 LINE L1 5482 5794 -497 387 0 0 0 chr1 123121255 123121298 -119543055 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 3814 117 45 29 chr1 123121298 123121557 -119542796 + L1MA7 LINE L1 5794 6047 -244 475 84 0 219 chr1 123121560 123121715 -119542638 + L1MA7 LINE L1 6159 6279 -12 1294 209 115 12 chr1 123122065 123122404 -119541949 + MLT1A2 LTR MaLR 1 374 0 1276 247 61 68 chr1 123122406 123123044 -119541309 + L2 LINE L2 2681 3301 -12 2203 213 62 34 chr1 123123347 123123731 -119540622 + L1ME3 LINE L1 5457 5870 -292 1716 160 4 4 chr1 123123731 123124006 -119540347 + AluJb SINE Alu 28 302 -10 2203 213 62 34 chr1 123124006 123124294 -119540059 + L1ME3 LINE L1 5870 6148 -14 427 259 208 38 chr1 123124776 123124988 -119539365 + L1ME LINE L1 5256 5503 -2305 248 219 31 0 chr1 123125127 123125191 -119539162 + L1ME LINE L1 5744 5809 -312 311 283 90 7 chr1 123127263 123127408 -119536945 - L1MC5 LINE L1 -32 7929 7773 444 213 29 37 chr1 123127438 123127574 -119536779 - L1MC4 LINE L1 -1137 6905 6771 481 220 42 0 chr1 123127987 123128105 -119536248 + MLT1B LTR MaLR 268 390 0 639 297 23 27 chr1 123128150 123128386 -119535967 - MIR SINE MIR -21 241 15 188 0 74 0 chr1 123128480 123128507 -119535846 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 240 367 72 29 chr1 123128608 123128747 -119535606 + L2 LINE L2 3127 3271 -1 1796 177 17 3 chr1 123129109 123129403 -119534950 - AluJo SINE Alu -14 298 1 210 105 0 0 chr1 123129706 123129744 -119534609 + (A)n Simple_repeat Simple_repeat 1 38 0 385 309 92 49 chr1 123130453 123130757 -119533596 + L2 LINE L2 2328 2644 -670 2197 116 0 0 chr1 123130921 123131215 -119533138 - AluSq SINE Alu -19 294 1 579 243 16 54 chr1 123131557 123131742 -119532611 + MIR SINE MIR 84 261 -1 196 275 38 53 chr1 123131878 123132009 -119532344 - L2 LINE L2 -880 2434 2306 1216 281 81 15 chr1 123132023 123132503 -119531850 + LTR33 LTR ERVL 10 521 0 261 305 152 7 chr1 123132518 123132669 -119531684 - L2 LINE L2 -1021 2293 2121 22 56 0 0 chr1 123132924 123132960 -119531393 + AT_rich Low_complexity Low_complexity 1 36 0 186 43 0 0 chr1 123132982 123133005 -119531348 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 6547 110 28 2 chr1 123133105 123134144 -119530209 - Tigger1 DNA MER2_type 0 2418 1353 6339 129 50 18 chr1 123134154 123135281 -119529072 - Tigger1 DNA MER2_type -1255 1163 1 584 223 84 0 chr1 123135284 123135499 -119528854 - L1MC4a LINE L1 -1815 5993 5761 877 301 127 35 chr1 123135557 123136249 -119528104 + L2 LINE L2 1317 2072 -1242 807 193 80 9 chr1 123136295 123136507 -119527846 - MER96B DNA MER1_type? -1 416 190 21 0 0 0 chr1 123136669 123136690 -119527663 + AT_rich Low_complexity Low_complexity 1 21 0 1995 138 0 0 chr1 123136711 123137038 -119527315 - AluSx SINE Alu 0 327 1 887 313 173 26 chr1 123137736 123138454 -119525899 + L2 LINE L2 2075 2897 -417 306 308 175 21 chr1 123138475 123138618 -119525735 + L2 LINE L2 3095 3259 -13 728 277 36 28 chr1 123138712 123138961 -119525392 - MIR SINE MIR -10 252 2 265 146 125 0 chr1 123138961 123138987 -119525366 - L2 LINE L2 -27 3245 3214 476 331 51 20 chr1 123139052 123139269 -119525084 - MIR SINE MIR -38 224 3 180 273 0 36 chr1 123139316 123139371 -119524982 + MER5B DNA MER1_type 4 56 -122 * 296 164 18 18 chr1 123139328 123139383 -119524970 - MER5A DNA MER1_type -13 176 122 1464 109 9 9 chr1 123139389 123139619 -119524734 - MER9 LTR ERVK -10 501 272 261 75 0 0 chr1 123139642 123139682 -119524671 + (T)n Simple_repeat Simple_repeat 1 40 0 1936 26 0 0 chr1 123139683 123139912 -119524441 - L1PA2 LINE L1 -3 6152 5924 234 191 73 0 chr1 123140934 123141002 -119523351 - L1ME4a LINE L1 -1 6120 6048 2525 78 0 0 chr1 123141029 123141337 -119523016 + AluSc SINE Alu 1 308 -1 345 260 73 68 chr1 123141425 123141463 -119522890 - L1ME4a LINE L1 -128 5993 5957 1089 8 0 0 chr1 123141463 123141585 -119522768 - L1PA3 LINE L1 -4 6151 6030 345 260 73 68 chr1 123141585 123141707 -119522646 - L1ME4a LINE L1 -164 5957 5829 1609 184 0 39 chr1 123141707 123142017 -119522336 - AluJb SINE Alu -14 298 1 345 260 73 68 chr1 123142017 123142047 -119522306 - L1ME4a LINE L1 -292 5829 5801 283 340 40 40 chr1 123142180 123142280 -119522073 - L2 LINE L2 -46 3226 3127 29 0 0 0 chr1 123143431 123143460 -119520893 + AT_rich Low_complexity Low_complexity 1 29 0 388 282 59 67 chr1 123143714 123143979 -119520374 + L2 LINE L2 2796 3061 -211 573 126 0 48 chr1 123144018 123144121 -119520232 - Tigger7 DNA MER2_type 0 2587 2490 * 1198 196 0 98 chr1 123144119 123144415 -119519938 - Tigger7 DNA MER2_type -466 267 1 198 103 0 0 chr1 123144699 123144728 -119519625 + (GA)n Simple_repeat Simple_repeat 2 30 0 896 231 33 0 chr1 123144759 123144941 -119519412 + MIR SINE MIR 17 204 -58 31 58 0 0 chr1 123144949 123145001 -119519352 + AT_rich Low_complexity Low_complexity 1 52 0 1977 145 0 13 chr1 123145498 123145802 -119518551 + AluSx SINE Alu 1 300 -12 519 329 96 52 chr1 123147002 123147409 -119516944 + L3 LINE CR1 115 539 -1038 1602 132 0 4 chr1 123148266 123148494 -119515859 - AluSx SINE Alu -25 287 61 852 239 69 36 chr1 123148620 123148955 -119515398 - L1MEc LINE L1 -2978 3237 2892 1246 145 100 37 chr1 123148959 123149200 -119515153 - AluJo SINE Alu -6 306 51 1140 257 6 21 chr1 123149203 123149538 -119514815 - L1MEc LINE L1 -3320 2895 2566 618 249 46 85 chr1 123149614 123149899 -119514454 - L1MEc LINE L1 -4680 1716 1454 685 195 8 8 chr1 123149899 123150022 -119514331 - FLAM_A SINE Alu -10 123 1 618 249 46 85 chr1 123150022 123150194 -119514159 - L1MEc LINE L1 -4942 1454 1277 297 234 43 85 chr1 123150234 123150375 -119513978 - L1MEc LINE L1 -6227 169 35 1047 271 93 69 chr1 123150416 123150833 -119513520 - L1MEc LINE L1 -5173 1174 768 2390 89 0 0 chr1 123150833 123151135 -119513218 - AluSc SINE Alu -5 304 3 1047 271 93 69 chr1 123151135 123151560 -119512793 - L1MEc LINE L1 -5579 768 330 316 230 35 0 chr1 123151798 123151885 -119512468 + L1ME1 LINE L1 3179 3268 -2878 820 130 8 8 chr1 123151904 123152027 -119512326 + FLAM_C SINE Alu 1 123 -20 717 245 8 70 chr1 123152033 123152105 -119512248 + L1ME1 LINE L1 3283 3358 -2788 1680 176 0 29 chr1 123152105 123152418 -119511935 - AluJo SINE Alu -8 304 1 717 245 8 70 chr1 123152418 123152602 -119511751 + L1ME1 LINE L1 3358 3523 -2623 17628 175 20 75 chr1 123152604 123155119 -119509234 + L1PA12 LINE L1 633 3286 -4298 2043 139 0 10 chr1 123155119 123155422 -119508931 - AluSx SINE Alu -12 300 1 17628 175 20 75 chr1 123155422 123155774 -119508579 + L1PA12 LINE L1 3286 3656 -3928 1213 138 11 0 chr1 123155774 123155955 -119508398 + AluSg/x SINE Alu 128 310 -2 17628 175 20 75 chr1 123155955 123157675 -119506678 + L1PA12 LINE L1 3656 5908 -1676 2194 83 17 3 chr1 123157675 123157965 -119506388 + AluY SINE Alu 1 294 -17 17628 175 20 75 chr1 123157965 123158151 -119506202 + L1PA12 LINE L1 5908 6103 -1481 1821 86 63 0 chr1 123158151 123158409 -119505944 + L1PA11 LINE L1 5889 6174 0 1472 246 64 9 chr1 123158409 123158837 -119505516 + L1ME1 LINE L1 3516 3970 -2176 494 274 116 0 chr1 123158839 123159003 -119505350 + LTR41 LTR ERVL 3 185 -588 475 247 122 98 chr1 123159430 123159685 -119504668 + LTR41 LTR ERVL 510 770 -3 782 168 0 0 chr1 123160139 123160264 -119504089 + FLAM_C SINE Alu 1 125 -8 2326 84 0 0 chr1 123160376 123160701 -119503652 - AluSx SINE Alu 0 325 1 2757 202 55 3 chr1 123161057 123161660 -119502693 + MER99 DNA DNA 192 825 -3 1250 195 43 4 chr1 123161666 123161943 -119502410 + L1ME1 LINE L1 5514 5801 -365 5504 214 86 15 chr1 123161954 123163503 -119500850 + L1 LINE L1 2579 4237 -1909 735 149 144 53 chr1 123163510 123163698 -119500655 + L1ME1 LINE L1 5838 6042 -124 689 291 142 33 chr1 123163755 123164568 -119499785 + L1ME1 LINE L1 4328 5228 -918 597 199 48 18 chr1 123165217 123165383 -119498970 + MER104 DNA Tc2 3 173 -7 30643 107 11 22 chr1 123165427 123168484 -119495869 - L1PA8 LINE L1 -2 6485 3395 2464 68 0 0 chr1 123168484 123168776 -119495577 - AluYa5 SINE Alu -19 292 1 30643 107 11 22 chr1 123168776 123172173 -119492180 - L1PA8 LINE L1 -3092 3395 1 262 285 32 16 chr1 123172170 123172293 -119492060 + L1ME1 LINE L1 5280 5404 -758 * 303 257 3 3 chr1 123172473 123172593 -119491760 + L1ME3A LINE L1 5845 5968 -202 266 243 18 90 chr1 123172640 123172751 -119491602 + L1ME3A LINE L1 5963 6065 -105 665 278 61 32 chr1 123172771 123173048 -119491305 - L2 LINE L2 -1318 1996 1712 626 218 300 24 chr1 123173499 123173887 -119490466 - MLT1H1 LTR MaLR -4 545 47 1084 173 0 66 chr1 123173962 123174188 -119490165 - AluJo SINE Alu -15 297 87 21 71 0 0 chr1 123174281 123174323 -119490030 + AT_rich Low_complexity Low_complexity 1 42 0 244 353 0 20 chr1 123174661 123174763 -119489590 - L2 LINE L2 -1 3312 3213 429 306 145 44 chr1 123174783 123175407 -119488946 - L2 LINE L2 -215 3057 2367 28 61 0 0 chr1 123175750 123175799 -119488554 + AT_rich Low_complexity Low_complexity 1 49 0 370 159 45 23 chr1 123175888 123175976 -119488377 + L1MA9 LINE L1 6218 6307 -5 214 357 141 28 chr1 123177022 123177305 -119487048 + L2 LINE L2 2446 2760 -554 373 274 0 0 chr1 123177380 123177464 -119486889 - L2 LINE L2 -1 3271 3188 671 276 127 33 chr1 123177628 123178041 -119486312 + L1ME1 LINE L1 5410 5861 -305 230 214 14 14 chr1 123178376 123178446 -119485907 + (TA)n Simple_repeat Simple_repeat 2 71 0 24 0 0 0 chr1 123178675 123178699 -119485654 + AT_rich Low_complexity Low_complexity 1 24 0 1257 27 0 0 chr1 123178699 123178847 -119485506 - L1PA5 LINE L1 -2 6152 6005 2003 149 17 3 chr1 123180514 123180815 -119483538 - AluSx SINE Alu -3 309 5 368 303 20 0 chr1 123181815 123181914 -119482439 + L2 LINE L2 3189 3289 -24 1966 139 7 0 chr1 123182733 123183047 -119481306 - AluSx SINE Alu 0 316 1 1156 254 78 85 chr1 123183481 123184197 -119480156 - L2 LINE L2 0 3313 2619 3580 227 113 10 chr1 123184197 123185218 -119479135 - L2 LINE L2 -1306 2008 883 21 36 0 0 chr1 123185457 123185485 -119478868 + AT_rich Low_complexity Low_complexity 1 28 0 908 257 72 8 chr1 123185509 123185746 -119478607 + MIR SINE MIR 2 253 -9 23 54 0 0 chr1 123187446 123187483 -119476870 + AT_rich Low_complexity Low_complexity 1 37 0 1343 186 14 4 chr1 123187485 123187760 -119476593 + L1 LINE L1 4993 5270 -876 2367 92 0 0 chr1 123188282 123188587 -119475766 + AluY SINE Alu 1 305 -6 1340 153 30 34 chr1 123188860 123189122 -119475231 + AluJo SINE Alu 50 310 0 219 69 0 0 chr1 123189501 123189530 -119474823 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 285 298 18 61 chr1 123189535 123189649 -119474704 + L2 LINE L2 3204 3312 -1 25 31 0 0 chr1 123190394 123190426 -119473927 + AT_rich Low_complexity Low_complexity 1 32 0 870 206 0 13 chr1 123190705 123190860 -119473493 + FRAM SINE Alu 1 152 -24 323 245 58 26 chr1 123191144 123191299 -119473054 + L1MB7 LINE L1 4340 4499 -1647 1821 146 44 0 chr1 123191312 123191586 -119472767 + AluJb SINE Alu 1 286 -26 4235 213 71 5 chr1 123191639 123193046 -119471307 + L1MB7 LINE L1 4676 6183 -1 455 180 173 14 chr1 123193042 123193199 -119471154 + L1ME2 LINE L1 5319 5470 -692 * 21320 96 29 14 chr1 123193194 123193484 -119470869 + L1PA3 LINE L1 1772 2056 -4099 2163 112 0 0 chr1 123193484 123193762 -119470591 + AluSg SINE Alu 2 279 -31 21320 96 29 14 chr1 123193762 123197784 -119466569 + L1PA3 LINE L1 2056 6152 -3 3196 193 30 98 chr1 123197790 123198201 -119466152 + L1 LINE L1 2761 3199 -2947 1529 199 28 7 chr1 123198201 123198492 -119465861 + AluJb SINE Alu 1 297 -15 3196 193 30 98 chr1 123198492 123198904 -119465449 + L1 LINE L1 3199 3501 -2645 243 0 0 0 chr1 123198904 123198931 -119465422 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3196 193 30 98 chr1 123198931 123199142 -119465211 + L1 LINE L1 3501 3725 -2421 5384 111 27 62 chr1 123199144 123199839 -119464514 + L1MA4A LINE L1 5100 5888 -415 2457 94 0 0 chr1 123199839 123200147 -119464206 + AluSc SINE Alu 2 309 0 5384 111 27 62 chr1 123200147 123200540 -119463813 + L1MA4A LINE L1 5888 6293 -10 1788 216 110 73 chr1 123200555 123201155 -119463198 + L1ME2 LINE L1 5459 6088 -76 2204 112 0 0 chr1 123201155 123201449 -119462904 - AluSg SINE Alu -16 294 1 1788 216 110 73 chr1 123201449 123201521 -119462832 + L1ME2 LINE L1 6088 6156 -8 2078 126 0 3 chr1 123201525 123201819 -119462534 - AluSx SINE Alu -19 293 1 26 0 0 0 chr1 123201823 123201849 -119462504 + AT_rich Low_complexity Low_complexity 1 26 0 271 295 36 0 chr1 123202412 123202524 -119461829 - L1MC4 LINE L1 -3 8039 7924 1070 262 116 10 chr1 123202701 123203098 -119461255 + Charlie7 DNA MER1_type 50 488 -2124 200 329 24 78 chr1 123203469 123203636 -119460717 + L2 LINE L2 2932 3089 -183 197 128 0 26 chr1 123203765 123203804 -119460549 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 488 252 81 0 chr1 123204372 123204495 -119459858 - MER94 DNA DNA -1 133 1 894 65 0 0 chr1 123205671 123205811 -119458542 - AluY SINE Alu 0 314 175 291 328 208 24 chr1 123205841 123206250 -119458103 + L2 LINE L2 2050 2533 -781 1711 117 12 4 chr1 123206260 123206507 -119457846 + AluSc SINE Alu 53 301 -8 2173 120 3 3 chr1 123206638 123206939 -119457414 - AluSx SINE Alu -11 301 1 199 373 125 35 chr1 123206993 123207312 -119457041 + L2 LINE L2 2440 2787 -527 284 352 87 30 chr1 123207442 123207489 -119456864 + L2 LINE L2 2942 2985 -287 306 0 0 0 chr1 123207489 123207523 -119456830 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2149 78 0 0 chr1 123207525 123207782 -119456571 - AluSc SINE Alu -40 269 13 284 352 87 30 chr1 123207782 123207961 -119456392 + L2 LINE L2 2985 3184 -88 188 35 35 0 chr1 123208168 123208197 -119456156 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 211 288 0 15 chr1 123210506 123210572 -119453781 + MIR3 SINE MIR 137 201 -7 23 0 0 0 chr1 123212151 123212174 -119452179 + AT_rich Low_complexity Low_complexity 1 23 0 440 177 31 21 chr1 123212280 123212376 -119451977 - L1MA5A LINE L1 -5 6292 6196 2112 106 13 23 chr1 123212438 123212741 -119451612 - AluSx SINE Alu -12 300 1 28 0 0 0 chr1 123213600 123213628 -119450725 + AT_rich Low_complexity Low_complexity 1 28 0 1315 166 0 34 chr1 123213683 123213918 -119450435 + AluJb SINE Alu 85 311 -1 2161 114 0 7 chr1 123214050 123214356 -119449997 - AluSc SINE Alu -5 304 1 21 0 0 0 chr1 123214951 123214972 -119449381 + AT_rich Low_complexity Low_complexity 1 21 0 405 344 16 0 chr1 123216149 123216274 -119448079 - L2 LINE L2 -9 3263 3137 630 275 39 16 chr1 123216349 123216531 -119447822 + MIR SINE MIR 77 262 0 266 338 31 102 chr1 123216552 123216845 -119447508 - L2 LINE L2 -176 3096 2825 320 312 83 0 chr1 123216856 123217013 -119447340 - L2 LINE L2 -1326 1988 1819 2065 138 59 150 chr1 123217033 123217679 -119446674 + L1MB8 LINE L1 5592 6178 0 1499 118 12 20 chr1 123218709 123218955 -119445398 - L1MA2 LINE L1 -10 6294 6051 434 132 13 0 chr1 123218965 123219041 -119445312 + (CA)n Simple_repeat Simple_repeat 2 78 0 2519 41 0 7 chr1 123219049 123219341 -119445012 - AluY SINE Alu -21 290 1 18577 152 51 38 chr1 123219341 123221509 -119442844 - L1MA3 LINE L1 -247 7477 5338 221 0 0 33 chr1 123221509 123221539 -119442814 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1648 118 22 0 chr1 123221541 123221769 -119442584 - AluSx SINE Alu -31 281 49 18577 152 51 38 chr1 123221769 123226972 -119437381 - L1MA3 LINE L1 -2386 5338 4 29 28 0 0 chr1 123227049 123227085 -119437268 + AT_rich Low_complexity Low_complexity 1 36 0 44483 35 2 5 chr1 123228455 123228802 -119435551 - L1PA3 LINE L1 0 6155 5808 2825 16 0 0 chr1 123228802 123229113 -119435240 - AluYa5 SINE Alu 0 311 1 44483 35 2 5 chr1 123229113 123234933 -119429420 - L1PA3 LINE L1 -347 5808 7 1595 122 99 27 chr1 123234937 123235121 -119429232 - AluSx SINE Alu 0 316 103 2283 97 3 3 chr1 123235121 123235420 -119428933 - AluSq SINE Alu -14 299 1 1595 122 99 27 chr1 123235420 123235532 -119428821 - AluSx SINE Alu -213 103 1 6115 98 6 0 chr1 123235599 123236445 -119427908 + L1PA8 LINE L1 5309 6159 -13 680 32 12 75 chr1 123236449 123236706 -119427647 + (TA)n Simple_repeat Simple_repeat 1 240 0 1294 164 33 47 chr1 123236730 123237005 -119427348 - MER31B LTR ERV1 -195 271 1 31 26 0 0 chr1 123237031 123237069 -119427284 + AT_rich Low_complexity Low_complexity 1 38 0 348 248 248 7 chr1 123239029 123239170 -119425183 + MIR SINE MIR 59 233 -29 2316 63 0 11 chr1 123239808 123240133 -119424220 - AluSc SINE Alu 0 322 1 2198 130 3 0 chr1 123240575 123240876 -119423477 - AluSx SINE Alu -10 302 1 22 0 0 0 chr1 123243152 123243174 -119421179 + AT_rich Low_complexity Low_complexity 1 22 0 200 310 56 0 chr1 123243437 123243474 -119420879 + MIR3 SINE MIR 128 161 -47 1922 121 0 4 chr1 123243474 123243739 -119420614 - AluSg SINE Alu -12 298 35 200 310 56 0 chr1 123243739 123243772 -119420581 + MIR3 SINE MIR 161 202 -6 874 112 0 0 chr1 123243964 123244080 -119420273 - AluSg/x SINE Alu -12 300 185 445 262 119 28 chr1 123244112 123244293 -119420060 + MIR SINE MIR 3 201 -7 23 0 0 0 chr1 123245381 123245404 -119418949 + AT_rich Low_complexity Low_complexity 1 23 0 30 45 0 0 chr1 123245584 123245628 -119418725 + AT_rich Low_complexity Low_complexity 1 44 0 2183 116 7 10 chr1 123247041 123247343 -119417010 - AluSx SINE Alu -11 301 1 318 152 279 0 chr1 123247495 123247574 -119416779 - MIR SINE MIR -1 261 161 437 258 16 39 chr1 123247804 123247932 -119416421 + L2 LINE L2 3189 3313 0 21 36 0 0 chr1 123248729 123248757 -119415596 + AT_rich Low_complexity Low_complexity 1 28 0 1794 101 0 0 chr1 123248902 123249139 -119415214 + AluSg SINE Alu 59 295 -15 22 35 0 0 chr1 123250004 123250033 -119414320 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr1 123250283 123250317 -119414036 + AT_rich Low_complexity Low_complexity 1 34 0 57 75 0 0 chr1 123250993 123251113 -119413240 + AT_rich Low_complexity Low_complexity 1 120 0 546 285 52 17 chr1 123251236 123251408 -119412945 + MIR SINE MIR 47 224 -38 2214 114 7 10 chr1 123251961 123252269 -119412084 - AluSx SINE Alu -5 307 1 1618 132 77 38 chr1 123256169 123256456 -119407897 - AluJb SINE Alu -14 298 1 207 194 0 0 chr1 123256469 123256505 -119407848 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 255 211 105 0 chr1 123256782 123256839 -119407514 + L2 LINE L2 2980 3042 -271 680 219 85 6 chr1 123256839 123257003 -119407350 - MIR SINE MIR 0 262 86 229 182 36 18 chr1 123256999 123257054 -119407299 - MER5C DNA MER1_type -209 115 60 * 30 59 0 0 chr1 123257984 123258035 -119406318 + AT_rich Low_complexity Low_complexity 1 51 0 256 230 34 0 chr1 123258359 123258453 -119405900 - L1MD3 LINE L1 -198 7610 7520 * 4251 165 43 32 chr1 123258443 123258496 -119405857 - L1MB7 LINE L1 -19 6165 6114 2332 77 3 0 chr1 123258496 123258783 -119405570 + AluSp SINE Alu 1 288 -25 198 0 0 0 chr1 123258788 123258810 -119405543 + (TA)n Simple_repeat Simple_repeat 2 23 0 4251 165 43 32 chr1 123258810 123259798 -119404555 - L1MB7 LINE L1 -73 6111 5097 577 193 118 8 chr1 123260003 123260122 -119404231 + FLAM_A SINE Alu 1 132 -1 494 258 82 9 chr1 123260131 123260376 -119403977 - L1MC/D LINE L1 -607 5563 5371 568 319 36 20 chr1 123260481 123260900 -119403453 - L1MC/D LINE L1 -922 5224 4791 180 152 0 0 chr1 123261127 123261160 -119403193 + (TA)n Simple_repeat Simple_repeat 1 33 0 15261 104 31 33 chr1 123261409 123263831 -119400522 - Tigger1 DNA MER2_type -1 2417 2 2898 6 0 0 chr1 123264122 123264434 -119399919 - AluYb8 SINE Alu -6 312 1 205 365 90 21 chr1 123264853 123265042 -119399311 - L2 LINE L2 -86 3186 2985 2346 100 0 0 chr1 123265083 123265382 -119398971 - AluSx SINE Alu -13 299 1 198 0 0 0 chr1 123265556 123265578 -119398775 + (A)n Simple_repeat Simple_repeat 1 22 0 252 59 0 0 chr1 123266183 123266217 -119398136 + (ATG)n Simple_repeat Simple_repeat 2 35 0 201 219 0 0 chr1 123266241 123266273 -119398080 - L2 LINE L2 -28 3285 3254 * 730 271 59 5 chr1 123266246 123266467 -119397886 - MIR SINE MIR -27 235 3 2403 84 0 0 chr1 123269663 123269961 -119394392 + AluSp SINE Alu 2 299 -14 183 138 0 0 chr1 123271422 123271451 -119392902 + MIR SINE MIR 118 146 -116 310 21 21 21 chr1 123271584 123271632 -119392721 + (TC)n Simple_repeat Simple_repeat 1 48 0 724 195 0 0 chr1 123271837 123271960 -119392393 + FLAM_A SINE Alu 1 123 -10 315 275 0 73 chr1 123272347 123272456 -119391897 + L2 LINE L2 3212 3312 -1 338 245 137 54 chr1 123272810 123273014 -119391339 - MIR SINE MIR -16 246 26 256 244 12 24 chr1 123273241 123273323 -119391030 + T-rich Low_complexity Low_complexity 5 85 0 354 219 49 0 chr1 123274237 123274319 -119390034 - MIR SINE MIR -60 202 117 2458 122 7 24 chr1 123274646 123275063 -119389290 - L1PA16 LINE L1 -6 6160 5751 2237 98 10 0 chr1 123275262 123275557 -119388796 - AluSp SINE Alu -15 298 1 2587 51 0 0 chr1 123276028 123276339 -119388014 + AluY SINE Alu 1 311 0 23 33 0 0 chr1 123281444 123281474 -119382879 + AT_rich Low_complexity Low_complexity 1 30 0 2227 102 0 20 chr1 123282089 123282392 -119381961 + AluSx SINE Alu 1 297 -15 692 177 0 57 chr1 123283269 123283396 -119380957 + FLAM_A SINE Alu 1 121 -181 2092 139 0 3 chr1 123283396 123283699 -119380654 - AluSx SINE Alu -10 302 1 692 177 0 57 chr1 123283699 123283712 -119380641 + FLAM_A SINE Alu 121 133 -169 2116 108 10 3 chr1 123283769 123284064 -119380289 + AluSc SINE Alu 1 297 -12 2264 109 0 6 chr1 123284264 123284576 -119379777 + AluY SINE Alu 1 310 -1 3086 94 29 63 chr1 123285092 123285582 -119378771 - MER1A DNA MER1_type 0 529 57 13947 126 112 21 chr1 123285900 123286639 -119377714 + Tigger2 DNA MER2_type 1 671 -2047 408 40 0 0 chr1 123286639 123286689 -119377664 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 13947 126 112 21 chr1 123286689 123288439 -119375914 + Tigger2 DNA MER2_type 671 2718 0 882 275 163 29 chr1 123288499 123289153 -119375200 - L2 LINE L2 0 3313 2550 188 245 143 0 chr1 123289181 123289230 -119375123 - L2 LINE L2 -864 2450 2395 2321 235 67 53 chr1 123289235 123290015 -119374338 + L1MEc LINE L1 76 866 -5530 831 222 127 102 chr1 123290056 123290740 -119373613 + L1MEc LINE L1 936 1636 -4760 528 338 63 34 chr1 123290780 123291129 -119373224 - L2 LINE L2 -524 2790 2432 453 211 148 122 chr1 123291625 123291862 -119372491 - MIR SINE MIR 0 262 20 1394 79 6 0 chr1 123292050 123292228 -119372125 + AluSq SINE Alu 131 309 -4 324 0 0 0 chr1 123293705 123293741 -119370612 + (CA)n Simple_repeat Simple_repeat 2 37 0 402 21 0 0 chr1 123294173 123294220 -119370133 + (CA)n Simple_repeat Simple_repeat 2 48 0 217 259 150 41 chr1 123296122 123296269 -119368084 - MIR SINE MIR -50 212 50 203 182 0 0 chr1 123296948 123296981 -119367372 - MIR SINE MIR -6 256 224 678 241 41 91 chr1 123297282 123297601 -119366752 + L1MEc LINE L1 1512 1814 -4582 227 232 72 0 chr1 123297943 123298012 -119366341 + L1MEc LINE L1 2244 2317 -4079 1020 187 0 0 chr1 123298024 123298195 -119366158 + AluJo SINE Alu 3 173 -139 388 263 163 53 chr1 123298215 123298405 -119365948 + L1MEc LINE L1 2262 2472 -3743 588 148 48 21 chr1 123298406 123298532 -119365821 + L1MC4 LINE L1 7502 7678 -364 694 214 157 15 chr1 123298594 123298899 -119365454 + L1MEc LINE L1 2547 2894 -3321 691 206 112 85 chr1 123298906 123299078 -119365275 + L1MC4 LINE L1 6859 7025 -1017 718 191 0 22 chr1 123299078 123299214 -119365139 - FLAM_C SINE Alu 0 133 1 691 206 112 85 chr1 123299214 123299271 -119365082 + L1MC4 LINE L1 7025 7079 -963 183 80 0 0 chr1 123299271 123299296 -119365057 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 691 206 112 85 chr1 123299296 123299430 -119364923 + L1MC4 LINE L1 7079 7233 -809 1771 152 7 10 chr1 123300710 123301013 -119363340 + AluJb SINE Alu 1 302 -10 23 78 0 0 chr1 123301985 123302036 -119362317 + AT_rich Low_complexity Low_complexity 1 51 0 761 141 0 87 chr1 123302401 123302550 -119361803 - FLAM_A SINE Alu 0 142 7 531 331 171 34 chr1 123303222 123303896 -119360457 - L2 LINE L2 0 3272 2467 2142 117 0 23 chr1 123303896 123304195 -119360158 + AluSx SINE Alu 1 292 -20 531 331 171 34 chr1 123304195 123304231 -119360122 - L2 LINE L2 -805 2467 2437 1617 173 77 0 chr1 123304526 123304798 -119359555 + AluJb SINE Alu 1 293 -19 239 418 25 8 chr1 123305043 123305165 -119359188 + L3 LINE CR1 1368 1491 -86 394 240 68 34 chr1 123305166 123305312 -119359041 - MIR SINE MIR 0 262 112 198 313 75 0 chr1 123305312 123305379 -119358974 + L3 LINE CR1 1492 1563 -14 556 185 154 0 chr1 123305659 123305789 -119358564 + MIR SINE MIR 113 262 0 1852 155 14 0 chr1 123306188 123306344 -119358009 - AluJo SINE Alu -17 295 132 180 0 0 0 chr1 123306344 123306364 -119357989 + (TA)n Simple_repeat Simple_repeat 2 21 0 1852 155 14 0 chr1 123306364 123306498 -119357855 - AluJo SINE Alu -180 132 1 855 308 20 8 chr1 123307865 123308115 -119356238 + MIR SINE MIR 2 254 -8 2368 49 0 18 chr1 123308337 123308621 -119355732 - AluY SINE Alu -10 301 23 17759 136 29 23 chr1 123309331 123310925 -119353428 + L1M1 LINE L1 569 2153 -5412 1950 154 29 10 chr1 123310925 123311231 -119353122 + AluJb SINE Alu 1 312 0 17759 136 29 23 chr1 123311231 123311888 -119352465 + L1M1 LINE L1 2153 2805 -4760 1696 175 16 22 chr1 123311888 123312202 -119352151 - AluJo SINE Alu 0 312 1 17759 136 29 23 chr1 123312202 123313118 -119351235 + L1M1 LINE L1 2805 3715 -3850 2839 56 3 8 chr1 123313118 123313475 -119350878 - THE1A LTR MaLR 0 355 1 11454 91 16 6 chr1 123313475 123314541 -119349812 - THE1A-int LTR MaLR 0 1580 491 2304 124 0 6 chr1 123314541 123314855 -119349498 - AluSx SINE Alu 0 312 1 11454 91 16 6 chr1 123314855 123315352 -119349001 - THE1A-int LTR MaLR -1089 491 1 2690 78 20 0 chr1 123315352 123315700 -119348653 - THE1A LTR MaLR 0 355 1 17759 136 29 23 chr1 123315700 123316144 -119348209 + L1M1 LINE L1 3714 4205 -3360 2313 103 0 0 chr1 123316151 123316481 -119347872 - THE1-int LTR MaLR -418 1162 833 840 184 6 45 chr1 123316481 123316660 -119347693 + AluSg/x SINE Alu 114 285 -27 7625 145 11 30 chr1 123316690 123317248 -119347105 + L1M1 LINE L1 5193 5760 -1964 2399 70 0 17 chr1 123317248 123317546 -119346807 - AluY SINE Alu -18 293 1 7625 145 11 30 chr1 123317546 123317722 -119346631 + L1M1 LINE L1 5760 5938 -1786 2155 85 43 0 chr1 123317722 123318003 -119346350 + AluY SINE Alu 1 293 -18 7625 145 11 30 chr1 123318003 123318183 -119346170 + L1M1 LINE L1 5938 6120 -1604 2209 81 10 34 chr1 123318183 123318527 -119345826 + AluSx SINE Alu 1 312 0 7625 145 11 30 chr1 123318527 123318730 -119345623 + L1M1 LINE L1 6120 6325 -1399 2190 127 0 0 chr1 123318730 123319030 -119345323 - AluSx SINE Alu -12 300 1 7625 145 11 30 chr1 123319030 123319846 -119344507 + L1M1 LINE L1 6325 7087 -637 1667 122 4 8 chr1 123319873 123320111 -119344242 + AluSx SINE Alu 64 300 -12 2212 115 0 13 chr1 123321234 123321538 -119342815 + AluSq SINE Alu 1 300 -13 501 250 22 2 chr1 123322439 123322554 -119341799 - MIR SINE MIR -89 119 2 207 100 0 0 chr1 123322582 123322612 -119341741 + (TA)n Simple_repeat Simple_repeat 2 31 0 449 176 120 37 chr1 123322876 123322984 -119341369 + L2 LINE L2 3188 3304 -9 234 146 83 42 chr1 123322987 123323035 -119341318 + L2 LINE L2 3262 3311 -2 186 242 76 76 chr1 123323083 123323149 -119341204 + L2 LINE L2 3248 3313 0 1760 145 20 40 chr1 123323237 123323541 -119340812 + AluJb SINE Alu 1 298 -14 403 138 0 0 chr1 123323584 123323642 -119340711 + AluS SINE Alu 226 283 -29 6522 95 36 12 chr1 123323673 123324179 -119340174 + L1MA2 LINE L1 5160 5652 -652 2144 140 0 9 chr1 123324179 123324494 -119339859 + AluSx SINE Alu 1 312 0 6522 95 36 12 chr1 123324494 123325105 -119339248 + L1MA2 LINE L1 5652 6304 0 887 286 84 62 chr1 123325128 123325785 -119338568 + MER21B LTR ERV1 23 693 -170 497 310 70 55 chr1 123325965 123326307 -119338046 + L1ME LINE L1 4071 4421 -1725 2209 172 36 2 chr1 123326307 123326748 -119337605 + L1MB3 LINE L1 5728 6183 0 497 310 70 55 chr1 123326748 123326789 -119337564 + L1ME LINE L1 4421 4460 -1686 1559 166 25 65 chr1 123326794 123327119 -119337234 + AluJo SINE Alu 1 312 0 2238 87 0 22 chr1 123327164 123327476 -119336877 + AluSx SINE Alu 1 305 -7 331 281 16 70 chr1 123327704 123327768 -119336585 + L1ME LINE L1 4660 4726 -1420 2276 106 0 0 chr1 123327768 123328061 -119336292 + AluSg SINE Alu 1 293 -17 331 281 16 70 chr1 123328061 123328181 -119336172 + L1ME LINE L1 4726 4834 -1312 22 0 0 0 chr1 123328323 123328345 -119336008 + AT_rich Low_complexity Low_complexity 1 22 0 1576 155 25 40 chr1 123328472 123328750 -119335603 - AluJo SINE Alu -34 278 5 342 288 152 4 chr1 123328768 123329018 -119335335 + L1ME LINE L1 5476 5762 -359 1478 170 101 9 chr1 123329031 123329349 -119335004 + MLT1A1 LTR MaLR 19 365 0 2963 178 13 44 chr1 123329349 123329530 -119334823 + MLT1A1-int LTR MaLR 1 186 -1549 2333 122 0 0 chr1 123329530 123329842 -119334511 + AluSx SINE Alu 1 312 0 2963 178 13 44 chr1 123329842 123330291 -119334062 + MLT1A1-int LTR MaLR 186 611 -1124 1254 171 33 8 chr1 123330336 123330581 -119333772 + MLT1A1 LTR MaLR 115 365 0 2229 144 0 0 chr1 123330636 123330948 -119333405 + AluSx SINE Alu 1 312 0 251 210 16 0 chr1 123331044 123331106 -119333247 + L1ME LINE L1 5772 5834 -287 644 209 0 8 chr1 123331107 123331236 -119333117 - MER3 DNA MER1_type -53 156 29 182 314 0 0 chr1 123331462 123331513 -119332840 - L2 LINE L2 -55 3258 3208 2520 57 0 0 chr1 123331613 123331911 -119332442 + AluY SINE Alu 1 298 -13 1703 310 77 43 chr1 123331916 123332015 -119332338 - L2 LINE L2 -255 3058 2964 2064 110 3 17 chr1 123332015 123332315 -119332038 + AluSq SINE Alu 1 296 -17 1703 310 77 43 chr1 123332315 123333093 -119331260 - L2 LINE L2 -349 2964 2123 1634 174 91 4 chr1 123333093 123333369 -119330984 + AluJb SINE Alu 1 300 -12 1703 310 77 43 chr1 123333369 123333463 -119330890 - L2 LINE L2 -1190 2123 2034 2236 114 0 3 chr1 123334399 123334705 -119329648 - AluSq SINE Alu -8 305 1 5636 140 33 6 chr1 123335005 123336299 -119328054 - L1MA5 LINE L1 -3 6297 4962 1930 143 3 23 chr1 123336300 123336607 -119327746 + AluSx SINE Alu 1 301 -11 366 341 45 8 chr1 123337222 123337354 -119326999 - L2 LINE L2 0 3272 3136 182 194 0 28 chr1 123337593 123337629 -119326724 - MIR SINE MIR -30 232 198 2341 151 61 9 chr1 123337629 123337894 -119326459 - Tigger3b DNA MER2_type -1798 1231 931 2309 92 13 3 chr1 123337894 123338200 -119326153 + AluSq SINE Alu 1 309 -4 2341 151 61 9 chr1 123338200 123338391 -119325962 - Tigger3b DNA MER2_type -2098 931 751 1196 190 190 0 chr1 123338392 123338521 -119325832 - AluJo SINE Alu -18 294 191 219 36 0 0 chr1 123338521 123338549 -119325804 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1196 190 190 0 chr1 123338549 123338666 -119325687 - AluJo SINE Alu -121 191 1 3590 106 41 9 chr1 123338668 123339356 -119324997 - Tigger3b DNA MER2_type -471 761 1 463 213 7 4 chr1 123339369 123339510 -119324843 - MIR SINE MIR -66 196 2 229 361 62 49 chr1 123340049 123340193 -119324160 - L2 LINE L2 -145 3127 2982 1554 162 18 15 chr1 123340236 123340508 -119323845 + AluSx SINE Alu 17 289 -23 402 114 0 0 chr1 123340536 123340606 -119323747 + (CAGGG)n Simple_repeat Simple_repeat 3 72 0 532 183 55 116 chr1 123340980 123341042 -119323311 - MER58B DNA MER1_type -2079 341 277 3500 133 11 8 chr1 123341042 123341567 -119322786 + MER1A DNA MER1_type 1 527 0 532 183 55 116 chr1 123341567 123341668 -119322685 - MER58B DNA MER1_type -2143 277 188 249 248 150 0 chr1 123342427 123342540 -119321813 - HAL1 LINE L1 -139 2368 2239 466 259 107 0 chr1 123342540 123342671 -119321682 + MIR SINE MIR 106 250 -12 1750 238 110 70 chr1 123342716 123343528 -119320825 - HAL1 LINE L1 -313 2194 1329 1803 181 3 3 chr1 123343528 123343827 -119320526 - AluJb SINE Alu -9 303 5 1750 238 110 70 chr1 123343827 123344071 -119320282 - HAL1 LINE L1 -1178 1329 1096 2019 141 16 7 chr1 123344078 123344384 -119319969 - AluJb SINE Alu -3 309 1 908 156 99 5 chr1 123344465 123344677 -119319676 - L1MA8 LINE L1 -4 6287 6056 680 304 205 31 chr1 123344706 123345506 -119318847 - HAL1 LINE L1 -1521 986 48 1594 153 61 14 chr1 123345539 123345833 -119318520 - AluJo SINE Alu -4 308 1 29 78 0 0 chr1 123346005 123346069 -119318284 + AT_rich Low_complexity Low_complexity 1 64 0 2114 88 46 3 chr1 123346129 123346413 -119317940 + AluSc SINE Alu 1 296 -13 856 169 15 0 chr1 123346532 123346662 -119317691 + FLAM_C SINE Alu 1 132 -11 1864 181 115 92 chr1 123346778 123347475 -119316878 - L1ME1 LINE L1 -5 6161 5449 3718 227 63 14 chr1 123347487 123347940 -119316413 - L1ME1 LINE L1 -1420 4726 4297 2359 51 54 3 chr1 123347940 123348236 -119316117 - AluY SINE Alu 0 311 1 3718 227 63 14 chr1 123348236 123348891 -119315462 - L1ME1 LINE L1 -1849 4297 3563 193 352 42 0 chr1 123348893 123348964 -119315389 + L2 LINE L2 2985 3058 -214 2018 135 16 0 chr1 123348973 123349276 -119315077 - AluSq SINE Alu -5 308 1 1254 184 24 0 chr1 123349310 123349522 -119314831 - AluJo SINE Alu -94 218 2 1827 186 0 0 chr1 123349681 123349977 -119314376 + AluJo SINE Alu 1 296 -16 241 228 76 51 chr1 123349988 123350067 -119314286 + L2 LINE L2 3229 3309 -4 366 228 102 96 chr1 123350085 123350282 -119314071 - L1ME1 LINE L1 -3005 3141 2944 229 350 126 23 chr1 123350285 123350499 -119313854 + L2 LINE L2 2694 2929 -385 213 226 83 60 chr1 123350489 123350573 -119313780 + L2 LINE L2 3219 3304 -9 * 31 76 0 0 chr1 123350606 123350672 -119313681 + AT_rich Low_complexity Low_complexity 1 66 0 234 182 6 63 chr1 123350694 123350815 -119313538 + T-rich Low_complexity Low_complexity 1 160 0 344 261 78 35 chr1 123350871 123350986 -119313367 + L2 LINE L2 3141 3260 -12 1850 56 0 52 chr1 123351324 123351573 -119312780 + AluY SINE Alu 1 236 -75 2226 96 0 3 chr1 123351776 123352067 -119312286 - AluSq SINE Alu 0 313 24 2311 60 3 24 chr1 123352137 123352435 -119311918 - AluY SINE Alu -19 292 1 2283 92 10 0 chr1 123352435 123352727 -119311626 - AluSx SINE Alu -17 295 1 1697 279 73 38 chr1 123353318 123354102 -119310251 + L2 LINE L2 2182 2999 -314 25 65 0 0 chr1 123354780 123354826 -119309527 + AT_rich Low_complexity Low_complexity 1 46 0 2347 84 0 3 chr1 123355463 123355761 -119308592 - AluY SINE Alu -14 297 1 1915 153 0 13 chr1 123406160 123406467 -119257886 + AluSg SINE Alu 5 307 -3 2029 143 0 0 chr1 123407263 123407550 -119256803 - AluSx SINE Alu -25 287 1 198 0 0 0 chr1 123408064 123408086 -119256267 + (TA)n Simple_repeat Simple_repeat 2 23 0 226 204 0 0 chr1 123408086 123408130 -119256223 - Alu SINE Alu -12 154 111 872 236 108 98 chr1 123408236 123408674 -119255679 - HAL1 LINE L1 -722 1785 1336 1803 181 3 3 chr1 123408674 123408973 -119255380 - AluJb SINE Alu -9 303 5 872 236 108 98 chr1 123408973 123409217 -119255136 - HAL1 LINE L1 -1171 1336 1096 2006 144 16 7 chr1 123409224 123409530 -119254823 - AluJb SINE Alu -3 309 1 908 156 99 5 chr1 123409611 123409823 -119254530 - L1MA8 LINE L1 -4 6287 6056 686 306 183 35 chr1 123409940 123410652 -119253701 - HAL1 LINE L1 -1643 864 48 1570 157 61 14 chr1 123410685 123410979 -119253374 - AluJo SINE Alu -4 308 1 29 78 0 0 chr1 123411151 123411215 -119253138 + AT_rich Low_complexity Low_complexity 1 64 0 2128 84 46 3 chr1 123411275 123411559 -119252794 + AluSc SINE Alu 1 296 -13 856 169 15 0 chr1 123411678 123411808 -119252545 + FLAM_C SINE Alu 1 132 -11 1864 181 115 92 chr1 123411924 123412621 -119251732 - L1ME1 LINE L1 -5 6161 5449 3597 227 68 14 chr1 123412633 123413085 -119251268 - L1ME1 LINE L1 -1420 4726 4300 2601 48 3 3 chr1 123413085 123413396 -119250957 - AluY SINE Alu 0 311 1 3597 227 68 14 chr1 123413396 123414047 -119250306 - L1ME1 LINE L1 -1846 4300 3563 192 352 42 0 chr1 123414049 123414120 -119250233 + L2 LINE L2 2985 3058 -214 2036 136 17 0 chr1 123414129 123414431 -119249922 - AluSq SINE Alu -6 307 1 1264 184 24 0 chr1 123414465 123414677 -119249676 - AluJo SINE Alu -94 218 2 1872 186 0 0 chr1 123414836 123415132 -119249221 + AluJo SINE Alu 1 296 -16 235 241 76 51 chr1 123415143 123415222 -119249131 + L2 LINE L2 3188 3268 -4 366 228 102 96 chr1 123415240 123415437 -119248916 - L1ME1 LINE L1 -3005 3141 2944 221 350 126 23 chr1 123415440 123415654 -119248699 + L2 LINE L2 2694 2929 -385 209 226 83 60 chr1 123415644 123415728 -119248625 + L2 LINE L2 3219 3304 -9 * 31 76 0 0 chr1 123415761 123415827 -119248526 + AT_rich Low_complexity Low_complexity 1 66 0 240 174 8 91 chr1 123415849 123415970 -119248383 + T-rich Low_complexity Low_complexity 6 116 0 345 261 78 35 chr1 123416026 123416141 -119248212 + L2 LINE L2 3141 3260 -12 2345 61 0 45 chr1 123416479 123416791 -119247562 + AluY SINE Alu 1 298 -13 2369 64 0 0 chr1 123417593 123417909 -119246444 + AluY SINE Alu 1 316 0 599 270 0 7 chr1 123418049 123418201 -119246152 + Charlie8 DNA MER1_type 107 257 -2160 1623 56 84 5 chr1 123418748 123418963 -119245390 + AluSq SINE Alu 76 307 -6 21 0 0 0 chr1 123419338 123419359 -119244994 + AT_rich Low_complexity Low_complexity 1 21 0 330 288 206 39 chr1 123419852 123420085 -119244268 + L2 LINE L2 3001 3272 0 189 0 0 0 chr1 123420377 123420398 -119243955 + (T)n Simple_repeat Simple_repeat 1 21 0 1784 143 28 3 chr1 123420687 123420974 -119243379 + AluJo SINE Alu 3 296 -16 400 256 174 6 chr1 123421342 123421514 -119242839 + MIR SINE MIR 51 251 -11 25 0 0 0 chr1 123423635 123423660 -119240693 + AT_rich Low_complexity Low_complexity 1 25 0 3503 154 18 2 chr1 123427225 123427842 -119236511 + L1MB2 LINE L1 5545 6171 0 2517 186 50 35 chr1 123428445 123429047 -119235306 + LTR26E LTR ERV1 10 620 -2 260 292 52 0 chr1 123429169 123429265 -119235088 + L1MC5 LINE L1 7799 7899 -62 268 310 110 0 chr1 123429739 123429884 -119234469 + L1P LINE L1 4894 5054 -1092 308 276 161 53 chr1 123430080 123430192 -119234161 + L1ME LINE L1 5322 5421 -700 1923 134 7 20 chr1 123430192 123430498 -119233855 + AluSx SINE Alu 1 302 -10 308 276 161 53 chr1 123430498 123430628 -119233725 + L1ME LINE L1 5421 5590 -531 2350 88 0 13 chr1 123430672 123430979 -119233374 + AluSc SINE Alu 1 303 -6 557 301 30 10 chr1 123431030 123431233 -119233120 + MER63A DNA MER1_type 1 207 -3 1074 150 11 21 chr1 123431329 123431342 -119233011 + AluJb SINE Alu 120 132 -180 2208 80 0 10 chr1 123431342 123431653 -119232700 + AluY SINE Alu 1 311 0 1074 150 11 21 chr1 123431653 123431826 -119232527 + AluJb SINE Alu 132 304 -8 2349 94 0 0 chr1 123431976 123432274 -119232079 - AluSq SINE Alu -15 298 1 1900 155 20 0 chr1 123432290 123432586 -119231767 - AluSx SINE Alu -10 302 1 189 354 250 28 chr1 123433126 123433338 -119231015 - L2 LINE L2 -5 3267 3009 432 213 0 0 chr1 123433380 123433455 -119230898 - FLAM_A SINE Alu -57 75 1 1519 151 46 63 chr1 123433497 123433782 -119230571 + AluJo SINE Alu 25 304 -8 261 297 109 36 chr1 123433870 123434035 -119230318 - L2 LINE L2 -482 2832 2656 2197 119 3 13 chr1 123435238 123435549 -119228804 - AluSx SINE Alu -4 308 1 189 347 83 42 chr1 123435565 123435709 -119228644 + L2 LINE L2 2900 3049 -223 2206 115 0 0 chr1 123436690 123436986 -119227367 + AluSg1 SINE Alu 1 296 -13 235 295 0 32 chr1 123438064 123438159 -119226194 + MLT1K LTR MaLR 481 572 -16 251 266 94 47 chr1 123438211 123438339 -119226014 + L2 LINE L2 1791 1924 -1390 340 344 169 28 chr1 123438360 123439015 -119225338 + L2 LINE L2 2068 2815 -499 2125 148 47 18 chr1 123439527 123439973 -119224380 - L1M2 LINE L1 -575 5725 5267 277 200 67 0 chr1 123439975 123440035 -119224318 + MER58B DNA MER1_type 276 339 -2 204 278 175 21 chr1 123440075 123440172 -119224181 + L2 LINE L2 3194 3305 -8 183 186 0 0 chr1 123440404 123440447 -119223906 + A-rich Low_complexity Low_complexity 1 43 0 463 276 163 5 chr1 123440491 123440687 -119223666 + MLT1J LTR MaLR 42 268 -243 302 365 95 25 chr1 123440900 123441141 -119223212 + L3 LINE CR1 1020 1277 -300 4368 112 132 20 chr1 123441187 123441380 -119222973 - Tigger3b DNA MER2_type -1797 1231 1061 1766 139 57 42 chr1 123441380 123441712 -119222641 - MER1B DNA MER1_type 0 337 1 4368 112 132 20 chr1 123441712 123442376 -119221977 - Tigger3b DNA MER2_type -1967 1061 278 569 206 0 0 chr1 123442373 123442470 -119221883 - Tigger3b DNA MER2_type -1131 100 4 * 264 339 95 68 chr1 123442485 123442706 -119221647 - L2 LINE L2 -47 3225 2999 1237 192 61 30 chr1 123443249 123443635 -119220718 + MLT1D LTR MaLR 1 468 -37 1228 95 0 18 chr1 123443637 123443805 -119220548 + AluJb SINE Alu 1 165 -147 313 261 119 23 chr1 123443851 123444111 -119220242 - L1M4 LINE L1 -1375 4771 4487 280 251 66 78 chr1 123444171 123444338 -119220015 + HAL1 LINE L1 1 165 -2342 962 230 123 107 chr1 123444543 123445607 -119218746 + HAL1 LINE L1 492 1572 -935 228 261 45 0 chr1 123445839 123445927 -119218426 + L1ME LINE L1 5678 5769 -393 2917 199 79 54 chr1 123445932 123446752 -119217601 + MER21B LTR ERV1 1 841 -22 734 120 99 0 chr1 123447177 123447319 -119217034 + L1MB4 LINE L1 6017 6172 -8 308 324 45 34 chr1 123447746 123447922 -119216431 + MER5B DNA MER1_type 1 178 0 192 237 0 0 chr1 123449322 123449360 -119214993 + MER5A DNA MER1_type 17 54 -135 767 258 0 17 chr1 123449383 123449561 -119214792 + AluJo SINE Alu 15 189 -123 452 239 17 43 chr1 123449648 123449765 -119214588 + AluJo SINE Alu 187 300 -12 197 143 48 0 chr1 123449765 123449807 -119214546 + GA-rich Low_complexity Low_complexity 2 45 0 24 0 0 0 chr1 123449979 123450003 -119214350 + AT_rich Low_complexity Low_complexity 1 24 0 328 229 312 0 chr1 123450076 123450185 -119214168 - MER5A DNA MER1_type -6 183 41 371 330 135 66 chr1 123450397 123450628 -119213725 + L2 LINE L2 2036 2250 -1022 1718 145 76 3 chr1 123450628 123450917 -119213436 - AluSx SINE Alu -2 310 1 371 330 135 66 chr1 123450917 123451833 -119212520 + L2 LINE L2 2250 3267 -5 446 246 14 49 chr1 123452168 123452310 -119212043 + MIR SINE MIR 40 176 -86 22 0 0 0 chr1 123453448 123453470 -119210883 + AT_rich Low_complexity Low_complexity 1 22 0 180 259 17 35 chr1 123454452 123454510 -119209843 + L3b LINE CR1 1269 1325 -258 294 329 0 13 chr1 123455200 123455355 -119208998 + L1ME LINE L1 5698 5850 -271 567 232 18 30 chr1 123455515 123455683 -119208670 + L1ME LINE L1 5517 5682 -439 2190 122 3 3 chr1 123455809 123456121 -119208232 + AluSx SINE Alu 1 312 0 2944 190 112 49 chr1 123456135 123456255 -119208098 + L1MD2 LINE L1 5188 5299 -943 2355 78 0 3 chr1 123456255 123456550 -119207803 + AluSq SINE Alu 1 294 -19 210 71 0 0 chr1 123456551 123456579 -119207774 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 * 243 0 0 0 chr1 123456578 123456605 -119207748 + (CA)n Simple_repeat Simple_repeat 2 28 0 2944 190 112 49 chr1 123456579 123456920 -119207433 + L1MD2 LINE L1 5299 5617 -625 1846 148 45 9 chr1 123456920 123457251 -119207102 + MER2 DNA MER2_type 2 344 0 2944 190 112 49 chr1 123457251 123457837 -119206516 + L1MD2 LINE L1 5617 6228 -14 631 295 43 19 chr1 123457960 123458170 -119206183 - MIR SINE MIR 0 262 48 369 215 39 46 chr1 123458262 123458392 -119205961 + MER103 DNA DNA 31 159 -7 937 168 79 11 chr1 123458529 123458719 -119205634 - MER3 DNA MER1_type -2 207 5 199 281 18 0 chr1 123458944 123459001 -119205352 + MIR SINE MIR 19 76 -132 25 0 0 0 chr1 123459007 123459032 -119205321 + AT_rich Low_complexity Low_complexity 1 25 0 320 290 65 28 chr1 123459044 123459151 -119205202 + MIR3 SINE MIR 76 186 -22 279 0 0 0 chr1 123459161 123459192 -119205161 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr1 123459557 123459582 -119204771 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr1 123461361 123461381 -119202972 + (A)n Simple_repeat Simple_repeat 1 20 0 1181 171 139 16 chr1 123462171 123462429 -119201924 + AluJo SINE Alu 1 290 -12 415 172 215 0 chr1 123462429 123462521 -119201832 - FLAM_A SINE Alu -17 116 4 30 27 0 0 chr1 123462841 123462878 -119201475 + AT_rich Low_complexity Low_complexity 1 37 0 2300 98 0 0 chr1 123464546 123464852 -119199501 - AluSx SINE Alu -6 306 1 1380 138 4 35 chr1 123465061 123465293 -119199060 + AluJb SINE Alu 1 225 -87 268 178 67 0 chr1 123465327 123465372 -119198981 + L2 LINE L2 3209 3256 -16 362 219 12 0 chr1 123465377 123465459 -119198894 + AluJ/FLAM SINE Alu 1 83 -219 2328 90 0 10 chr1 123465501 123465801 -119198552 + AluSx SINE Alu 1 297 -15 1761 161 3 32 chr1 123466317 123466602 -119197751 - AluJb SINE Alu -19 293 17 880 142 0 8 chr1 123466817 123466951 -119197402 - FLAM_C SINE Alu 0 143 11 240 254 56 0 chr1 123467144 123467215 -119197138 + L1ME4a LINE L1 5740 5814 -307 188 326 0 0 chr1 123467532 123467578 -119196775 - L2 LINE L2 -52 3220 3175 500 187 119 30 chr1 123467581 123467715 -119196638 - BC200 scRNA scRNA -53 147 2 423 0 0 0 chr1 123467939 123467986 -119196367 + (CA)n Simple_repeat Simple_repeat 2 48 0 342 245 101 0 chr1 123467986 123468125 -119196228 + L1ME4a LINE L1 5965 6117 -4 183 139 0 0 chr1 123469211 123469247 -119195106 + (A)n Simple_repeat Simple_repeat 1 36 0 2192 104 0 10 chr1 123469357 123469656 -119194697 - AluSx SINE Alu -16 296 1 2088 129 14 3 chr1 123470334 123470629 -119193724 - AluSx SINE Alu -14 298 1 4221 137 55 18 chr1 123471079 123471846 -119192507 - L1MC1 LINE L1 -13 6320 5526 403 306 76 6 chr1 123471860 123472017 -119192336 + MIR SINE MIR 95 262 0 482 310 37 71 chr1 123472045 123472194 -119192159 + MIR SINE MIR 2 140 -122 1600 154 32 83 chr1 123472194 123472506 -119191847 + AluJo SINE Alu 1 296 -16 482 310 37 71 chr1 123472506 123472624 -119191729 + MIR SINE MIR 140 260 -2 204 370 34 17 chr1 123472731 123472850 -119191503 - MIR SINE MIR -125 137 17 1634 106 149 8 chr1 123473496 123473751 -119190602 - AluSg SINE Alu -19 291 1 279 351 27 54 chr1 123473899 123474047 -119190306 + MIR3 SINE MIR 8 151 -57 816 222 162 0 chr1 123474202 123474436 -119189917 - MER58B DNA MER1_type 0 341 70 2057 94 45 3 chr1 123474436 123474722 -119189631 + AluSx SINE Alu 1 298 -14 1149 201 46 37 chr1 123474744 123475092 -119189261 + L1M4 LINE L1 4851 5201 -945 401 153 0 0 chr1 123475095 123475154 -119189199 + AluJ/FLAM SINE Alu 3 61 -251 1681 108 0 0 chr1 123475254 123475477 -119188876 - AluSc SINE Alu -86 223 1 415 241 94 49 chr1 123475602 123475805 -119188548 + MLT1J LTR MaLR 2 213 -298 293 214 36 0 chr1 123475925 123475981 -119188372 + Charlie1 DNA MER1_type 3 60 -2701 1818 138 0 30 chr1 123477188 123477484 -119186869 + AluSx SINE Alu 3 289 -23 29 70 0 0 chr1 123477987 123478044 -119186309 + AT_rich Low_complexity Low_complexity 1 57 0 234 267 53 27 chr1 123478050 123478125 -119186228 - L2 LINE L2 -17 3296 3220 217 0 61 0 chr1 123478312 123478345 -119186008 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2157 94 7 7 chr1 123478348 123478636 -119185717 - AluSg SINE Alu -22 288 1 360 323 24 8 chr1 123478655 123478779 -119185574 + MLT1K LTR MaLR 19 144 -444 261 255 160 0 chr1 123478901 123478995 -119185358 + MLT1K LTR MaLR 153 261 -327 384 188 42 21 chr1 123479152 123479248 -119185105 + MLT1K LTR MaLR 488 585 -3 1003 280 54 93 chr1 123479273 123479694 -119184659 + L2 LINE L2 2643 3010 -303 2190 101 3 0 chr1 123479694 123479980 -119184373 + AluSg SINE Alu 1 287 -23 1003 280 54 93 chr1 123479980 123480273 -119184080 + L2 LINE L2 3010 3313 0 2355 98 0 0 chr1 123481118 123481415 -119182938 - AluSg SINE Alu -13 297 1 999 85 0 16 chr1 123481732 123481861 -119182492 + AluJb SINE Alu 1 127 -185 32 0 0 0 chr1 123481861 123481893 -119182460 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr1 123481982 123482003 -119182350 + (A)n Simple_repeat Simple_repeat 1 21 0 1629 151 58 22 chr1 123482430 123482708 -119181645 + AluJo SINE Alu 1 288 -24 2147 104 0 4 chr1 123482718 123483027 -119181326 - AluSg SINE Alu 0 308 1 21 0 0 0 chr1 123483027 123483048 -119181305 + AT_rich Low_complexity Low_complexity 1 21 0 1734 176 7 3 chr1 123483083 123483378 -119180975 + AluJb SINE Alu 6 301 -11 689 33 22 0 chr1 123483390 123483481 -119180872 + (GGGAA)n Simple_repeat Simple_repeat 2 94 0 2831 10 0 0 chr1 123483694 123484004 -119180349 - AluYa5 SINE Alu -1 310 1 24 77 0 0 chr1 123484244 123484296 -119180057 + AT_rich Low_complexity Low_complexity 1 52 0 650 191 32 82 chr1 123484507 123484727 -119179626 - L1MC4a LINE L1 -1962 5846 5638 734 83 0 113 chr1 123484734 123484867 -119179486 + FLAM_C SINE Alu 12 129 -14 816 214 40 59 chr1 123484879 123485183 -119179170 - L1MC4a LINE L1 -2248 5560 5263 509 322 51 46 chr1 123485211 123485664 -119178689 - L1MC4a LINE L1 -913 5233 4779 1775 140 32 4 chr1 123485695 123485974 -119178379 - AluJb SINE Alu -25 287 1 40 67 0 0 chr1 123486046 123486121 -119178232 + AT_rich Low_complexity Low_complexity 1 75 0 996 115 0 6 chr1 123486284 123486440 -119177913 - L1PA15 LINE L1 -1 6164 6010 500 219 47 33 chr1 123487297 123487512 -119176841 + L1MC5 LINE L1 7297 7514 -447 393 191 43 67 chr1 123487519 123487728 -119176625 + L1MC5 LINE L1 7477 7680 -281 254 291 0 0 chr1 123488018 123488073 -119176280 + L2 LINE L2 3244 3298 -15 1075 161 5 10 chr1 123488320 123488512 -119175841 - L1MB5 LINE L1 -59 6115 5925 208 305 32 64 chr1 123488615 123488802 -119175551 + L2 LINE L2 2883 3063 -209 470 309 68 38 chr1 123488987 123489223 -119175130 - MIR SINE MIR 0 262 20 2242 70 28 3 chr1 123489232 123489519 -119174834 - AluSc SINE Alu -15 294 1 531 145 12 0 chr1 123489529 123489612 -119174741 - FRAM SINE Alu -23 153 70 278 314 33 127 chr1 123490975 123491274 -119173079 + L2 LINE L2 2996 3266 -6 1353 164 39 92 chr1 123491607 123491912 -119172441 - AluJo SINE Alu -19 293 5 27 62 0 0 chr1 123492095 123492143 -119172210 + AT_rich Low_complexity Low_complexity 1 48 0 2277 103 0 0 chr1 123492278 123492589 -119171764 + AluY SINE Alu 1 311 0 21 0 0 0 chr1 123492631 123492652 -119171701 + AT_rich Low_complexity Low_complexity 1 21 0 230 0 0 0 chr1 123492982 123493012 -119171341 - Alu SINE Alu -10 290 261 1732 166 14 0 chr1 123493688 123493972 -119170381 + AluJo SINE Alu 1 288 -24 255 228 13 51 chr1 123494176 123494209 -119170144 + GA-rich Low_complexity Low_complexity 6 39 -42 2481 87 0 3 chr1 123494209 123494519 -119169834 + AluSc SINE Alu 1 309 0 255 228 13 51 chr1 123494519 123494564 -119169789 + GA-rich Low_complexity Low_complexity 39 81 0 834 321 18 22 chr1 123496002 123496279 -119168074 + L2 LINE L2 2820 3095 -218 772 176 0 15 chr1 123496289 123496420 -119167933 - FLAM_A SINE Alu -4 129 1 683 202 0 16 chr1 123496427 123496556 -119167797 - AluJb SINE Alu -12 300 174 21 36 0 0 chr1 123496615 123496643 -119167710 + AT_rich Low_complexity Low_complexity 1 28 0 2304 179 57 41 chr1 123496661 123496970 -119167383 + L1MB3 LINE L1 3883 4186 -1960 2169 106 3 47 chr1 123496970 123497290 -119167063 + AluSx SINE Alu 1 306 -6 2304 179 57 41 chr1 123497290 123497595 -119166758 + L1MB3 LINE L1 4186 4507 -1639 4410 160 43 57 chr1 123497599 123497984 -119166369 + L1MB3 LINE L1 4566 4955 -1228 2359 98 3 0 chr1 123497984 123498291 -119166062 + AluSp SINE Alu 1 308 -5 4410 160 43 57 chr1 123498291 123498638 -119165715 + L1MB3 LINE L1 4955 5305 -878 2204 104 0 26 chr1 123498638 123498945 -119165408 - AluSx SINE Alu -13 299 1 4410 160 43 57 chr1 123498945 123498967 -119165386 + L1MB3 LINE L1 5305 5326 -857 1557 201 3 20 chr1 123498967 123499260 -119165093 + AluJo SINE Alu 3 290 -22 4410 160 43 57 chr1 123499260 123499436 -119164917 + L1MB3 LINE L1 5326 5503 -680 2378 86 3 0 chr1 123499436 123499739 -119164614 + AluSc SINE Alu 1 304 -5 4410 160 43 57 chr1 123499739 123499862 -119164491 + L1MB3 LINE L1 5503 5626 -557 2874 3 0 0 chr1 123499862 123500172 -119164181 + AluYa8 SINE Alu 1 310 0 4410 160 43 57 chr1 123500172 123500341 -119164012 + L1MB3 LINE L1 5626 5796 -387 302 0 26 0 chr1 123500341 123500379 -119163974 + (TG)n Simple_repeat Simple_repeat 2 40 0 4410 160 43 57 chr1 123500379 123500765 -119163588 + L1MB3 LINE L1 5796 6180 -3 718 268 18 0 chr1 123500766 123500994 -119163359 - L1MDa LINE L1 -2512 4028 3797 753 117 0 0 chr1 123501007 123501110 -119163243 + FLAM_C SINE Alu 1 103 -40 5202 171 104 69 chr1 123501110 123501238 -119163115 - L1MDa LINE L1 -2843 3697 3575 2098 131 20 0 chr1 123501238 123501536 -119162817 + AluSg SINE Alu 1 304 -6 5202 171 104 69 chr1 123501536 123501861 -119162492 - L1MDa LINE L1 -2965 3575 3263 1863 155 3 22 chr1 123501861 123502177 -119162176 - AluJb SINE Alu -2 310 1 5202 171 104 69 chr1 123502177 123502243 -119162110 - L1MDa LINE L1 -3277 3263 3201 2124 120 3 19 chr1 123502243 123502559 -119161794 - AluSq SINE Alu 0 313 3 5202 171 104 69 chr1 123502559 123504638 -119159715 - L1MDa LINE L1 -3339 3201 992 2053 104 6 73 chr1 123504641 123504958 -119159395 - AluSx SINE Alu -16 296 1 747 174 33 0 chr1 123504970 123505091 -119159262 - FLAM_C SINE Alu -18 125 1 1896 137 11 0 chr1 123505108 123505393 -119158960 - AluSx SINE Alu -15 297 10 196 211 53 35 chr1 123506132 123506189 -119158164 - MIR SINE MIR -73 189 132 2061 151 0 3 chr1 123506631 123506943 -119157410 - AluJb SINE Alu -1 311 1 2031 130 0 10 chr1 123506968 123507252 -119157101 + AluSg SINE Alu 1 283 -27 779 30 0 10 chr1 123507252 123507351 -119157002 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 2205 114 0 3 chr1 123508219 123508517 -119155836 - AluSx SINE Alu -15 297 1 435 164 173 27 chr1 123509642 123509752 -119154601 - MER5A DNA MER1_type 0 189 64 2302 107 3 0 chr1 123509991 123510301 -119154052 - AluSp SINE Alu -2 311 1 320 113 19 0 chr1 123510353 123510406 -119153947 - Charlie5 DNA MER1_type 0 2624 2571 2283 101 16 0 chr1 123510406 123510712 -119153641 - AluSp SINE Alu -2 311 1 1391 90 0 0 chr1 123510739 123510916 -119153437 - AluSg/x SINE Alu -6 304 128 2495 76 0 10 chr1 123510916 123511230 -119153123 - AluY SINE Alu 0 311 1 292 118 132 0 chr1 123511230 123511306 -119153047 - Charlie5 DNA MER1_type -72 2540 2455 468 104 0 0 chr1 123511308 123511375 -119152978 - MER5A DNA MER1_type -120 69 3 562 123 219 0 chr1 123512133 123512247 -119152106 + L1PA16 LINE L1 5997 6135 -31 2074 131 0 29 chr1 123512277 123512589 -119151764 + AluSx SINE Alu 1 303 -9 1311 164 0 18 chr1 123513073 123513293 -119151060 - AluSg/x SINE Alu -10 302 87 255 214 0 43 chr1 123513351 123513421 -119150932 + Charlie8 DNA MER1_type 2341 2407 -10 1242 162 153 0 chr1 123514045 123514384 -119149969 - Charlie5 DNA MER1_type 0 2624 2234 536 186 124 0 chr1 123514381 123514494 -119149859 - Charlie5 DNA MER1_type -2485 127 1 * 1710 157 0 18 chr1 123515106 123515387 -119148966 - AluJo SINE Alu -3 309 34 1933 156 10 0 chr1 123515706 123516001 -119148352 - AluJb SINE Alu -14 298 1 273 119 0 0 chr1 123516230 123516272 -119148081 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 1439 156 7 81 chr1 123517022 123517305 -119147048 - AluJb SINE Alu -11 301 40 1117 184 0 14 chr1 123517305 123517523 -119146830 + Tigger7 DNA MER2_type 2277 2491 0 2241 106 0 3 chr1 123518290 123518601 -119145752 - AluSg SINE Alu 0 310 1 1128 61 0 0 chr1 123518607 123518739 -119145614 - AluSq/x SINE Alu -179 133 2 2250 109 0 13 chr1 123519060 123519371 -119144982 + AluSg SINE Alu 1 307 -3 2003 146 0 0 chr1 123520167 123520454 -119143899 - AluSx SINE Alu -25 287 1 29 0 0 0 chr1 123520954 123520983 -119143370 + AT_rich Low_complexity Low_complexity 1 29 0 566 121 12 0 chr1 123520983 123521066 -119143287 - AluSg/x SINE Alu -18 292 209 * 678 119 184 0 chr1 123521062 123521198 -119143155 + AluSp/q SINE Alu 156 311 0 1073 171 0 0 chr1 123521302 123521477 -119142876 + FRAM SINE Alu 1 175 -1 903 196 70 0 chr1 123521530 123521688 -119142665 + AluJb SINE Alu 133 301 -11 2193 101 17 7 chr1 123521688 123521984 -119142369 + AluY SINE Alu 1 299 -12 199 302 23 23 chr1 123521993 123522079 -119142274 - L2 LINE L2 -278 2994 2909 385 255 66 28 chr1 123522398 123522585 -119141768 + MIR SINE MIR 1 252 -10 313 316 94 0 chr1 123522658 123522870 -119141483 + L1ME3A LINE L1 5548 5779 -342 238 274 360 7 chr1 123522877 123523030 -119141323 - MIR SINE MIR -26 236 30 798 221 106 19 chr1 123523051 123523259 -119141094 + MIR SINE MIR 37 262 0 2181 96 0 3 chr1 123523284 123523595 -119140758 + AluSc SINE Alu 1 310 0 302 280 104 8 chr1 123523640 123523765 -119140588 + L1ME3A LINE L1 5807 5943 -178 1721 165 4 0 chr1 123523822 123524101 -119140252 - AluJb SINE Alu -32 280 1 571 317 10 19 chr1 123524350 123524555 -119139798 + MIR SINE MIR 1 203 -59 23 0 0 0 chr1 123524590 123524613 -119139740 + AT_rich Low_complexity Low_complexity 1 23 0 357 298 107 8 chr1 123524648 123524769 -119139584 + L2 LINE L2 3180 3312 -1 356 342 40 69 chr1 123524880 123524907 -119139446 + MER91A DNA MER1_type 1 27 -169 1245 199 104 16 chr1 123524907 123525223 -119139130 + MER2 DNA MER2_type 1 344 0 356 342 40 69 chr1 123525223 123525397 -119138956 + MER91A DNA MER1_type 27 196 0 258 245 77 87 chr1 123525737 123525933 -119138420 + L1ME3A LINE L1 5962 6155 -15 459 273 12 61 chr1 123525963 123525996 -119138357 - L2 LINE L2 -571 2743 2710 1903 122 35 21 chr1 123525996 123526283 -119138070 + AluSq SINE Alu 1 291 -22 459 273 12 61 chr1 123526283 123526414 -119137939 - L2 LINE L2 -604 2710 2587 2265 114 0 0 chr1 123526453 123526750 -119137603 - AluSq SINE Alu -16 297 1 515 252 24 16 chr1 123527088 123527215 -119137138 + L2 LINE L2 3184 3311 -2 366 153 82 71 chr1 123527239 123527337 -119137016 - MIR SINE MIR -73 189 91 1684 172 6 52 chr1 123527793 123528119 -119136234 + AluJo SINE Alu 1 311 -1 22 35 0 0 chr1 123528235 123528264 -119136089 + AT_rich Low_complexity Low_complexity 1 29 0 1048 300 71 18 chr1 123529773 123530333 -119134020 + MLT1L LTR MaLR 16 605 -10 339 338 60 23 chr1 123530484 123530617 -119133736 + HAL1 LINE L1 766 903 -1604 842 274 112 28 chr1 123530628 123531227 -119133126 + HAL1 LINE L1 1093 1741 -766 180 0 0 0 chr1 123531641 123531661 -119132692 + (A)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chr1 123532209 123532237 -119132116 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 123532353 123532374 -119131979 + AT_rich Low_complexity Low_complexity 1 21 0 2355 101 3 0 chr1 123532941 123533248 -119131105 + AluSg SINE Alu 2 309 -1 735 252 62 22 chr1 123534646 123534872 -119129481 - MIR SINE MIR -26 236 2 2439 87 0 3 chr1 123535931 123536241 -119128112 - AluSx SINE Alu -3 309 1 376 253 61 30 chr1 123536264 123536363 -119127990 + L2 LINE L2 3184 3285 -28 1712 167 9 28 chr1 123536368 123536685 -119127668 - AluJo SINE Alu -1 311 1 227 239 113 0 chr1 123538363 123538434 -119125919 - MIR SINE MIR -11 251 173 2543 70 0 13 chr1 123538490 123538802 -119125551 - AluSx SINE Alu -4 308 1 2252 118 10 31 chr1 123541418 123541801 -119122552 - HERVH LTR ERV1 -182 7531 7157 2246 152 9 9 chr1 123541794 123542221 -119122132 - HERVH LTR ERV1 -1697 6016 5590 * 7430 118 10 5 chr1 123542212 123543361 -119120992 - HERVH LTR ERV1 -2564 5149 3995 1658 137 4 0 chr1 123543385 123543647 -119120706 - HERVH LTR ERV1 -3979 3734 3472 1780 179 25 33 chr1 123543647 123544044 -119120309 - MER74A LTR ERVL -164 394 1 336 220 33 0 chr1 123544137 123544228 -119120125 + MLT1L LTR MaLR 520 613 -2 1861 146 58 0 chr1 123544331 123544626 -119119727 + AluSx SINE Alu 1 312 0 881 169 0 0 chr1 123544719 123544855 -119119498 - AluJb SINE Alu -176 136 1 445 319 18 18 chr1 123545265 123545428 -119118925 + MIR3 SINE MIR 40 202 -6 750 193 84 0 chr1 123545626 123545792 -119118561 + MLT1C LTR MaLR 45 224 -243 2413 84 0 3 chr1 123545815 123546113 -119118240 + AluSp SINE Alu 1 297 -16 1014 249 15 15 chr1 123546113 123546386 -119117967 + MLT1C LTR MaLR 195 467 0 476 309 61 11 chr1 123546445 123546626 -119117727 - MIR SINE MIR -26 236 47 231 254 154 18 chr1 123546746 123546856 -119117497 + L2 LINE L2 2312 2436 -878 1127 168 44 20 chr1 123546898 123547101 -119117252 + AluJo SINE Alu 91 298 -14 241 301 133 20 chr1 123547105 123547308 -119117045 + L2 LINE L2 2396 2621 -693 2780 82 2 90 chr1 123547310 123547442 -119116911 - MER4B LTR ERV1 -5 774 632 1937 150 3 0 chr1 123547442 123547750 -119116603 - AluJb SINE Alu 0 309 1 2780 82 2 90 chr1 123547750 123548166 -119116187 - MER4B LTR ERV1 -147 632 100 508 168 40 139 chr1 123548180 123548311 -119116042 + LTR9 LTR ERV1 457 569 -43 2580 23 3 3 chr1 123548311 123548612 -119115741 - AluYa5 SINE Alu -10 301 1 508 168 40 139 chr1 123548612 123548653 -119115700 + LTR9 LTR ERV1 569 612 0 201 94 0 0 chr1 123548663 123548695 -119115658 + (A)n Simple_repeat Simple_repeat 1 32 0 739 159 85 26 chr1 123548726 123548915 -119115438 + PABL_B LTR ERV1 467 666 -1 444 134 12 24 chr1 123548941 123549023 -119115330 - MER4B LTR ERV1 -527 83 3 421 267 180 33 chr1 123549024 123549324 -119115029 + L2 LINE L2 2614 2957 -357 198 0 0 0 chr1 123549483 123549505 -119114848 + (T)n Simple_repeat Simple_repeat 1 22 0 931 192 29 0 chr1 123550024 123550196 -119114157 - MER45A DNA AcHobo 0 178 2 919 314 47 18 chr1 123551300 123551641 -119112712 - L3 LINE CR1 -9 1568 1218 531 249 59 18 chr1 123551672 123551841 -119112512 + MIR SINE MIR 87 262 0 403 285 73 34 chr1 123551858 123552037 -119112316 - L3 LINE CR1 -490 1087 902 2386 176 23 2 chr1 123552572 123553055 -119111298 - L1 LINE L1 -2449 4399 3907 707 141 7 74 chr1 123553061 123553196 -119111157 - AluJb SINE Alu -186 126 1 6441 201 34 20 chr1 123553227 123553272 -119111081 - L1 LINE L1 -2975 3873 3830 2107 125 3 0 chr1 123553272 123553575 -119110778 - AluSx SINE Alu -8 304 1 6441 201 34 20 chr1 123553575 123554679 -119109674 - L1 LINE L1 -3018 3830 2743 1785 132 3 98 chr1 123554679 123555005 -119109348 - AluJo SINE Alu -7 295 1 6441 201 34 20 chr1 123555005 123555635 -119108718 - L1 LINE L1 -4105 2743 2123 1941 151 3 3 chr1 123555635 123555947 -119108406 - AluSx SINE Alu 0 312 1 6441 201 34 20 chr1 123555947 123556597 -119107756 - L1 LINE L1 -4725 2123 1406 2886 140 18 74 chr1 123556789 123557346 -119107007 - LTR9 LTR ERV1 -86 526 1 496 285 41 8 chr1 123557347 123557470 -119106883 + L2 LINE L2 3186 3312 -1 876 280 69 69 chr1 123558115 123558726 -119105627 - PABL_A LTR ERV1 -2 658 48 256 220 0 0 chr1 123558780 123558830 -119105523 - PABL_B LTR ERV1 -617 50 1 1811 114 0 8 chr1 123558831 123559085 -119105268 + AluSx SINE Alu 29 280 -32 2558 96 8 3 chr1 123559138 123559491 -119104862 - THE1A LTR MaLR 0 355 1 11768 98 6 3 chr1 123559491 123561066 -119103287 - THE1A-int LTR MaLR 0 1580 1 2335 111 17 9 chr1 123561066 123561416 -119102937 - THE1A LTR MaLR 0 355 3 1795 161 0 13 chr1 123561931 123562229 -119102124 + AluJo SINE Alu 1 294 -18 198 0 0 0 chr1 123562921 123562943 -119101410 + (TAA)n Simple_repeat Simple_repeat 1 22 0 1515 160 0 45 chr1 123563480 123563793 -119100560 - AluJb SINE Alu -13 299 1 198 261 120 43 chr1 123563877 123563969 -119100384 + MIR SINE MIR 2 100 -162 2456 113 85 10 chr1 123564129 123564527 -119099826 + MSTA LTR MaLR 1 428 0 638 252 38 13 chr1 123564529 123564688 -119099665 - MIR SINE MIR -60 202 40 240 212 0 0 chr1 123564938 123565004 -119099349 + CT-rich Low_complexity Low_complexity 3 68 0 519 266 131 26 chr1 123565418 123565647 -119098706 + MIR SINE MIR 9 261 -1 418 263 8 53 chr1 123566318 123566451 -119097902 + MIR SINE MIR 63 189 -73 2260 64 40 0 chr1 123566467 123566765 -119097588 + AluY SINE Alu 1 310 -1 291 54 0 0 chr1 123567049 123567086 -119097267 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 1913 140 3 0 chr1 123567285 123567578 -119096775 + AluJo SINE Alu 9 302 -10 417 302 100 58 chr1 123567709 123568432 -119095921 - L2 LINE L2 -164 3108 2353 677 209 0 0 chr1 123568673 123568788 -119095565 + FLAM_C SINE Alu 7 121 -22 345 140 0 0 chr1 123568788 123568845 -119095508 + (TA)n Simple_repeat Simple_repeat 1 57 0 743 171 101 0 chr1 123568857 123568986 -119095367 + FRAM SINE Alu 1 137 -39 239 321 125 17 chr1 123569003 123569290 -119095063 - L2 LINE L2 -1486 1828 1511 6364 127 80 10 chr1 123569909 123571009 -119093344 - Tigger3b DNA MER2_type -54 1177 1 344 79 0 59 chr1 123571072 123571154 -119093199 + MLT1F LTR MaLR 462 618 -8 311 204 68 11 chr1 123571154 123571242 -119093111 + HAL1 LINE L1 2268 2360 -147 1762 213 3 26 chr1 123571254 123571602 -119092751 - MLT1F LTR MaLR -193 349 10 668 299 87 0 chr1 123572671 123572935 -119091418 + Charlie8 DNA MER1_type 1 287 -2130 1822 141 67 30 chr1 123573304 123573665 -119090688 + THE1C LTR MaLR 1 374 -1 718 271 27 27 chr1 123573734 123573955 -119090398 + MIR SINE MIR 41 261 -1 1420 180 18 73 chr1 123574127 123574454 -119089899 - AluJo SINE Alu -3 309 1 856 239 182 12 chr1 123574692 123575120 -119089233 - L2 LINE L2 0 3313 2749 277 221 0 116 chr1 123575136 123575231 -119089122 + L2 LINE L2 2597 2680 -634 2798 123 39 12 chr1 123575457 123575872 -119088481 + MSTB LTR MaLR 1 426 0 219 258 0 61 chr1 123576021 123576087 -119088266 + L2 LINE L2 3209 3270 -2 192 297 127 25 chr1 123576340 123576458 -119087895 + MIR SINE MIR 18 147 -115 1721 86 0 0 chr1 123578410 123578631 -119085722 - AluSg/x SINE Alu 0 312 92 183 139 0 0 chr1 123579111 123579147 -119085206 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 443 325 35 39 chr1 123579380 123579663 -119084690 - L2 LINE L2 -750 2564 2283 3107 80 52 5 chr1 123579834 123580258 -119084095 - MLT2A1 LTR ERVL 0 444 1 44253 67 13 16 chr1 123580258 123581001 -119083352 - HERVL-A1-A1 LTR ERVL 0 5654 4911 2017 109 3 16 chr1 123581001 123581313 -119083040 - AluY SINE Alu -3 308 1 44253 67 13 16 chr1 123581313 123586238 -119078115 - HERVL-A1-A1 LTR ERVL -743 4911 1 3132 70 17 68 chr1 123586238 123586323 -119078030 - MLT2A1 LTR ERVL 0 444 356 184 56 0 56 chr1 123586323 123586359 -119077994 + (TA)n Simple_repeat Simple_repeat 2 35 0 3132 70 17 68 chr1 123586359 123586741 -119077612 - MLT2A1 LTR ERVL -88 356 1 21 36 0 0 chr1 123587106 123587134 -119077219 + AT_rich Low_complexity Low_complexity 1 28 0 347 285 57 0 chr1 123588960 123589083 -119075270 - L2 LINE L2 -1035 2279 2150 289 290 61 46 chr1 123589138 123589269 -119075084 - MIR SINE MIR -49 213 81 369 281 82 0 chr1 123589746 123589881 -119074472 + MER103 DNA DNA 20 165 -1 215 163 20 0 chr1 123590047 123590096 -119074257 + (TG)n Simple_repeat Simple_repeat 2 51 0 200 352 0 0 chr1 123594201 123594255 -119070098 + MIR SINE MIR 2 55 -207 537 198 0 0 chr1 123594284 123594385 -119069968 + MIR SINE MIR 162 262 0 186 391 14 0 chr1 123594400 123594469 -119069884 + L2 LINE L2 3244 3313 0 633 238 54 0 chr1 123594854 123595022 -119069331 + L1 LINE L1 4553 4729 -1417 442 349 30 0 chr1 123596357 123596526 -119067827 - MIR3 SINE MIR -20 188 15 397 242 210 6 chr1 123597623 123597780 -119066573 - MIR SINE MIR -7 255 67 436 328 50 20 chr1 123598176 123598374 -119065979 + L2 LINE L2 3053 3256 -57 5917 266 126 32 chr1 123598401 123599908 -119064445 + L2 LINE L2 443 1808 -1505 441 0 0 0 chr1 123599908 123599957 -119064396 + (TG)n Simple_repeat Simple_repeat 2 50 0 1663 180 56 37 chr1 123599957 123600312 -119064041 - MLT1A1 LTR MaLR -3 362 1 5917 266 126 32 chr1 123600312 123600914 -119063439 + L2 LINE L2 1808 2352 -961 959 196 55 5 chr1 123600914 123601113 -119063240 + MER3 DNA MER1_type 1 209 0 5917 266 126 32 chr1 123601113 123601486 -119062867 + L2 LINE L2 2352 2689 -624 1813 137 44 77 chr1 123601486 123601874 -119062479 + THE1C LTR MaLR 1 375 0 5917 266 126 32 chr1 123601874 123602023 -119062330 + L2 LINE L2 2689 3313 0 2279 102 0 3 chr1 123602562 123602877 -119061476 + AluSx SINE Alu 1 314 0 202 310 112 62 chr1 123603099 123603341 -119061012 + L2 LINE L2 3015 3268 -4 355 234 68 91 chr1 123603677 123604062 -119060291 + L1MC5 LINE L1 7555 7930 -31 474 320 120 27 chr1 123604815 123605040 -119059313 - MIR SINE MIR 0 262 17 357 325 79 58 chr1 123606211 123606451 -119057902 - L2 LINE L2 0 3272 3028 200 204 20 0 chr1 123607399 123607448 -119056905 + (TG)n Simple_repeat Simple_repeat 2 51 0 928 216 6 0 chr1 123607719 123607890 -119056463 - FRAM SINE Alu -4 172 1 208 239 194 52 chr1 123608695 123608829 -119055524 + L2 LINE L2 2961 3113 -159 815 200 5 100 chr1 123609072 123609282 -119055071 - MIR SINE MIR -44 218 29 6520 200 10 2 chr1 123609288 123611405 -119052948 - L1PA15 LINE L1 0 6165 4027 360 380 116 16 chr1 123611656 123612267 -119052086 - L2 LINE L2 -460 2854 2183 333 288 0 4 chr1 123612238 123612407 -119051946 + MIR SINE MIR 28 262 0 * 222 307 85 33 chr1 123612425 123612578 -119051775 - L2 LINE L2 -1099 2215 2055 264 200 92 0 chr1 123612782 123612847 -119051506 + L2 LINE L2 3242 3312 -1 508 231 91 65 chr1 123612866 123613065 -119051288 + MIR SINE MIR 51 254 -8 243 268 122 75 chr1 123613874 123614037 -119050316 + MIR SINE MIR 20 196 -66 667 276 66 26 chr1 123614153 123614381 -119049972 - MIR SINE MIR -6 256 20 24 67 0 0 chr1 123615489 123615534 -119048819 + AT_rich Low_complexity Low_complexity 1 45 0 328 258 108 0 chr1 123615919 123616012 -119048341 - MIR3 SINE MIR -6 202 100 326 160 20 40 chr1 123616530 123616680 -119047673 + (TCTCTG)n Simple_repeat Simple_repeat 2 148 0 283 295 124 9 chr1 123618622 123618727 -119045626 - MIR SINE MIR -96 166 50 195 229 219 38 chr1 123620200 123620305 -119044048 + L3b LINE CR1 1329 1452 -131 378 61 0 0 chr1 123622927 123622976 -119041377 + (CA)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chr1 123622977 123622999 -119041354 + (TC)n Simple_repeat Simple_repeat 1 22 0 520 243 90 37 chr1 123623285 123623474 -119040879 + MIR SINE MIR 15 213 -49 207 0 0 0 chr1 123623490 123623513 -119040840 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 525 343 50 0 chr1 123624310 123624491 -119039862 - MIR SINE MIR 0 262 73 760 279 57 9 chr1 123625208 123625437 -119038916 - MIR SINE MIR 0 262 23 967 191 78 0 chr1 123626739 123626943 -119037410 + MIR SINE MIR 30 249 -13 24 67 0 0 chr1 123626983 123627028 -119037325 + AT_rich Low_complexity Low_complexity 1 45 0 270 220 0 0 chr1 123627481 123627531 -119036822 + L2 LINE L2 3213 3262 -10 276 317 83 0 chr1 123627691 123627811 -119036542 + MIR3 SINE MIR 11 140 -68 735 132 0 0 chr1 123628487 123628601 -119035752 - Tigger1 DNA MER2_type -5 2413 2300 222 37 0 0 chr1 123628602 123628629 -119035724 + (CA)n Simple_repeat Simple_repeat 2 28 0 315 269 87 29 chr1 123628640 123628744 -119035609 + L1MC4 LINE L1 6612 6721 -1321 222 204 23 23 chr1 123628751 123628883 -119035470 + (TA)n Simple_repeat Simple_repeat 1 132 0 25 31 0 0 chr1 123628965 123628997 -119035356 + AT_rich Low_complexity Low_complexity 1 32 0 255 152 0 0 chr1 123629021 123629067 -119035286 + (TA)n Simple_repeat Simple_repeat 1 46 0 741 83 0 9 chr1 123629104 123629213 -119035140 - Tigger1 DNA MER2_type -841 1577 1470 13844 123 40 15 chr1 123629260 123631501 -119032852 - Tigger1 DNA MER2_type -122 2296 1 199 225 313 0 chr1 123631548 123631628 -119032725 - L2 LINE L2 -15 3298 3194 228 318 24 0 chr1 123632853 123632938 -119031415 - L2 LINE L2 -328 2985 2899 341 266 87 37 chr1 123633277 123633467 -119030886 + MIR SINE MIR 29 232 -30 * 805 208 140 9 chr1 123633458 123633679 -119030674 - MIR SINE MIR -5 257 8 416 237 21 0 chr1 123633872 123633965 -119030388 - MIR SINE MIR 0 262 168 1284 246 66 33 chr1 123635009 123635403 -119028950 - MLT1I LTR MaLR -2 407 1 193 311 80 20 chr1 123637442 123637593 -119026760 + L2 LINE L2 2890 3049 -223 228 214 0 0 chr1 123639021 123639077 -119025276 + (TG)n Simple_repeat Simple_repeat 2 57 0 383 340 53 19 chr1 123639199 123639408 -119024945 + MIR SINE MIR 20 235 -27 290 279 0 0 chr1 123639551 123639630 -119024723 + MIR SINE MIR 54 132 -76 381 281 176 21 chr1 123639996 123640190 -119024163 - MIR SINE MIR -9 253 33 189 279 0 0 chr1 123640428 123640471 -119023882 - L2 LINE L2 -9 3304 3262 301 302 155 0 chr1 123640919 123641035 -119023318 - L2 LINE L2 -1 3271 3138 202 375 0 14 chr1 123641471 123641543 -119022810 - L2 LINE L2 -83 3189 3119 2497 269 74 43 chr1 123641794 123642197 -119022156 - L2 LINE L2 -2 3311 2922 1492 176 3 54 chr1 123642197 123642492 -119021861 + AluJb SINE Alu 1 280 -32 1101 29 35 18 chr1 123642492 123642662 -119021691 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 2497 269 74 43 chr1 123642662 123643603 -119020750 - L2 LINE L2 -390 2923 1838 5305 224 21 13 chr1 123645365 123646526 -119017827 - L1M2c LINE L1 -5618 1171 2 332 333 116 26 chr1 123646591 123646894 -119017459 + L1MC/D LINE L1 5435 5764 -2044 764 135 48 0 chr1 123647078 123647204 -119017149 + FLAM_C SINE Alu 1 132 -1 390 247 11 11 chr1 123647446 123647539 -119016814 - MIR SINE MIR -56 206 114 210 237 34 34 chr1 123648235 123648294 -119016059 + MIR3 SINE MIR 144 202 -6 334 289 62 10 chr1 123648661 123648758 -119015595 - L2 LINE L2 -4 3309 3208 266 272 11 65 chr1 123648763 123648855 -119015498 + MIR3 SINE MIR 110 196 -12 385 259 12 0 chr1 123648909 123648994 -119015359 - MIR SINE MIR -118 144 59 318 26 0 0 chr1 123649374 123649413 -119014940 + (TC)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr1 123649413 123649436 -119014917 + (CA)n Simple_repeat Simple_repeat 2 24 0 704 164 132 53 chr1 123649720 123649872 -119014481 + AluSg/x SINE Alu 131 294 -18 2194 119 140 8 chr1 123649957 123650335 -119014018 + MSTA LTR MaLR 1 428 0 334 278 43 9 chr1 123650377 123650471 -119013882 - MIR SINE MIR -109 99 11 349 311 163 22 chr1 123650484 123650619 -119013734 + MIR SINE MIR 59 212 -50 905 248 33 12 chr1 123650668 123650680 -119013673 - MIR SINE MIR 0 262 252 2248 104 0 23 chr1 123650680 123650987 -119013366 + AluY SINE Alu 1 300 -11 905 248 33 12 chr1 123650987 123651216 -119013137 - MIR SINE MIR -10 252 16 2248 122 58 0 chr1 123651415 123651759 -119012594 + THE1B LTR MaLR 1 364 0 244 247 208 0 chr1 123651904 123651981 -119012372 - L2 LINE L2 -1 3271 3179 404 196 335 32 chr1 123652125 123652283 -119012070 - MIR SINE MIR -37 225 20 1564 82 55 9 chr1 123652519 123652739 -119011614 - MER30 DNA MER1_type 0 230 1 3770 100 2 4 chr1 123653224 123653736 -119010617 + MER9 LTR ERVK 1 511 0 203 326 11 0 chr1 123655459 123655551 -119008802 + (CA)n Simple_repeat Simple_repeat 1 93 0 189 0 0 0 chr1 123655600 123655621 -119008732 + (CA)n Simple_repeat Simple_repeat 2 22 0 30 45 0 0 chr1 123663558 123663602 -119000751 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 123663960 123663982 -119000371 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1 123666568 123666594 -118997759 + AT_rich Low_complexity Low_complexity 1 26 0 284 149 0 0 chr1 123667210 123667257 -118997096 + MLT1J LTR MaLR 101 147 -364 320 247 59 0 chr1 123667380 123667465 -118996888 + MLT1J2 LTR MaLR 361 450 0 963 180 6 0 chr1 123668267 123668428 -118995925 - AluJb SINE Alu -15 297 136 2115 112 4 0 chr1 123668824 123669101 -118995252 - AluSx SINE Alu -30 282 5 7567 82 20 0 chr1 123670197 123671244 -118993109 + L1MA1 LINE L1 5233 6301 -1 195 42 0 0 chr1 123672789 123672813 -118991540 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 277 235 0 0 chr1 123674218 123674286 -118990067 + A-rich Low_complexity Low_complexity 2 69 0 25 0 0 0 chr1 123674798 123674823 -118989530 + AT_rich Low_complexity Low_complexity 1 25 0 1123 101 0 19 chr1 123675531 123675690 -118988663 + AluSc SINE Alu 135 290 -19 1898 155 0 26 chr1 123675695 123676004 -118988349 + AluJb SINE Alu 1 301 -11 2105 120 14 0 chr1 123676675 123676966 -118987387 - AluSx SINE Alu -17 295 1 203 390 15 22 chr1 123677586 123677722 -118986631 - L2 LINE L2 -4 3268 3134 256 397 9 0 chr1 123677838 123677954 -118986399 - L2 LINE L2 -222 3050 2934 212 314 59 0 chr1 123677989 123678091 -118986262 + MIR SINE MIR 138 245 -17 2222 108 3 7 chr1 123678377 123678683 -118985670 + AluSx SINE Alu 1 305 -7 2608 92 22 0 chr1 123678786 123679144 -118985209 + L1MC1 LINE L1 5444 5809 -524 1107 156 0 0 chr1 123679146 123679319 -118985034 + AluSg/x SINE Alu 119 291 -21 983 141 47 31 chr1 123679360 123679551 -118984802 + L1MC1 LINE L1 6140 6333 0 26 0 0 0 chr1 123679814 123679840 -118984513 + AT_rich Low_complexity Low_complexity 1 26 0 263 209 60 0 chr1 123679858 123679925 -118984428 - MIR SINE MIR -155 107 37 1143 133 18 0 chr1 123680018 123680183 -118984170 + AluJb SINE Alu 138 305 -7 253 281 151 27 chr1 123680467 123680613 -118983740 - MLT1-int LTR MaLR -66 1305 1142 2308 99 3 3 chr1 123681322 123681625 -118982728 - AluSg SINE Alu -7 303 1 1174 147 31 54 chr1 123681782 123682006 -118982347 + MER20 DNA MER1_type 1 219 0 257 180 20 0 chr1 123682108 123682158 -118982195 - L2 LINE L2 -3 3269 3219 2309 105 3 3 chr1 123682199 123682505 -118981848 + AluSq SINE Alu 1 306 -7 1637 134 20 12 chr1 123682609 123682863 -118981490 + AluSx SINE Alu 49 304 -8 1735 174 7 4 chr1 123683022 123683326 -118981027 - AluJo SINE Alu 0 305 1 1715 153 41 7 chr1 123683329 123683623 -118980730 - AluJo SINE Alu -8 304 1 221 350 19 49 chr1 123684125 123684391 -118979962 - L2 LINE L2 -190 3082 2825 250 277 44 88 chr1 123686569 123686633 -118977720 - MER5B DNA MER1_type -1 177 112 2395 95 3 0 chr1 123686633 123686937 -118977416 + AluSx SINE Alu 1 305 -7 250 277 44 88 chr1 123686937 123687031 -118977322 - MER5B DNA MER1_type -66 112 26 1712 147 11 19 chr1 123687089 123687355 -118976998 + AluSx SINE Alu 1 264 -48 198 103 0 0 chr1 123687363 123687392 -118976961 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 698 229 144 0 chr1 123688041 123688194 -118976159 + MER96 DNA MER1_type? 1 175 0 211 184 20 0 chr1 123688408 123688457 -118975896 - L2 LINE L2 0 3313 3264 202 255 0 0 chr1 123689171 123689222 -118975131 + L2 LINE L2 3217 3267 -5 307 246 82 18 chr1 123689226 123689336 -118975017 + MIR SINE MIR 30 146 -62 2388 74 3 0 chr1 123690605 123690890 -118973463 + AluSp SINE Alu 1 286 -27 1607 171 73 0 chr1 123691823 123692110 -118972243 - AluJo SINE Alu -4 308 1 2336 91 0 0 chr1 123692858 123693145 -118971208 - AluSx SINE Alu -25 287 1 193 273 182 40 chr1 123693345 123693444 -118970909 - L2 LINE L2 -179 3093 2981 259 263 119 44 chr1 123693578 123693738 -118970615 - MER5B DNA MER1_type -3 175 4 310 294 108 48 chr1 123693999 123694230 -118970123 - L2 LINE L2 -921 2393 2149 2557 64 0 3 chr1 123695826 123696137 -118968216 - AluSx SINE Alu -2 310 1 2640 24 0 10 chr1 123696275 123696572 -118967781 - AluY SINE Alu -17 294 1 750 158 0 43 chr1 123696997 123697136 -118967217 - FLAM_A SINE Alu 0 133 1 2397 87 0 13 chr1 123697244 123697553 -118966800 - AluSq SINE Alu -8 305 1 203 250 118 0 chr1 123698032 123698100 -118966253 + L2 LINE L2 2999 3074 -239 1811 179 0 10 chr1 123698104 123698395 -118965958 + AluJb SINE Alu 1 288 -24 201 256 0 0 chr1 123698566 123698609 -118965744 + (CA)n Simple_repeat Simple_repeat 1 43 0 209 296 0 37 chr1 123698624 123698705 -118965648 - L2 LINE L2 -341 2931 2854 464 230 109 52 chr1 123698808 123698982 -118965371 + L2 LINE L2 3129 3312 -1 438 240 149 34 chr1 123699168 123699343 -118965010 + MARNA DNA Mariner 294 488 -98 321 299 67 30 chr1 123699474 123699608 -118964745 - L2 LINE L2 -1 3271 3133 236 352 42 21 chr1 123699993 123700135 -118964218 + L2 LINE L2 2721 2865 -449 1764 159 20 7 chr1 123700279 123700574 -118963779 - AluJb SINE Alu -13 299 1 479 187 0 0 chr1 123702215 123702306 -118962047 - MER103 DNA DNA -73 93 3 326 239 232 13 chr1 123703305 123703460 -118960893 + MIR SINE MIR 42 230 -32 676 258 154 8 chr1 123703594 123703963 -118960390 - L1ME4a LINE L1 -141 5980 5558 1779 151 0 46 chr1 123704377 123704682 -118959671 - AluJb SINE Alu -21 291 1 2216 97 27 0 chr1 123705129 123705428 -118958925 - AluSx SINE Alu -5 307 1 635 304 40 22 chr1 123706426 123706653 -118957700 + MIR SINE MIR 1 231 -31 198 103 0 0 chr1 123706654 123706683 -118957670 + (A)n Simple_repeat Simple_repeat 1 29 0 2120 120 7 0 chr1 123706695 123706987 -118957366 + AluSx SINE Alu 1 294 -18 181 240 20 20 chr1 123707448 123707498 -118956855 + L2 LINE L2 2430 2479 -835 892 279 212 13 chr1 123707863 123708387 -118955966 + L2 LINE L2 230 857 -2457 247 114 0 0 chr1 123708500 123708535 -118955818 - Alu SINE Alu -178 124 90 4284 102 66 78 chr1 123708627 123708703 -118955650 + L1PA16 LINE L1 5413 5488 -678 2198 102 0 16 chr1 123708703 123709008 -118955345 + AluSg SINE Alu 1 300 -10 4284 102 66 78 chr1 123709008 123709685 -118954668 + L1PA16 LINE L1 5488 6157 -9 369 0 0 0 chr1 123709698 123709739 -118954614 + (CA)n Simple_repeat Simple_repeat 1 41 0 2198 111 16 3 chr1 123709740 123710046 -118954307 + AluSx SINE Alu 1 310 -2 378 300 131 30 chr1 123710065 123710332 -118954021 - L2 LINE L2 -443 2871 2578 909 107 15 23 chr1 123710357 123710488 -118953865 - FLAM_C SINE Alu -3 130 1 2026 123 0 14 chr1 123710878 123711201 -118953152 - AluSx SINE Alu 0 323 5 2343 92 7 0 chr1 123711219 123711525 -118952828 - AluSp SINE Alu -5 308 1 23 33 0 0 chr1 123711531 123711561 -118952792 + AT_rich Low_complexity Low_complexity 1 30 0 1813 138 3 27 chr1 123711562 123711860 -118952493 + AluSg SINE Alu 1 291 -19 370 72 12 18 chr1 123711862 123711928 -118952425 - Alu SINE Alu -250 52 1 250 242 141 67 chr1 123711962 123712111 -118952242 - MIR SINE MIR -95 167 8 21 0 0 0 chr1 123712272 123712293 -118952060 + AT_rich Low_complexity Low_complexity 1 21 0 693 151 0 71 chr1 123712325 123712451 -118951902 - AluJ SINE Alu -181 131 15 192 216 0 0 chr1 123712461 123712512 -118951841 + CT-rich Low_complexity Low_complexity 3 53 0 1531 184 51 24 chr1 123712512 123712806 -118951547 - AluJo SINE Alu -10 302 1 201 266 62 16 chr1 123712882 123712946 -118951407 - L2 LINE L2 -4 3268 3202 1165 127 6 6 chr1 123713552 123713718 -118950635 - FRAM SINE Alu -15 161 1 434 211 64 0 chr1 123713793 123713902 -118950451 - L1MB5 LINE L1 0 6174 6059 321 26 0 0 chr1 123714383 123714421 -118949932 + (TC)n Simple_repeat Simple_repeat 1 38 0 566 81 0 12 chr1 123714457 123714543 -118949810 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 773 161 0 9 chr1 123714543 123714655 -118949698 - FLAM_A SINE Alu -25 117 7 2228 88 3 27 chr1 123714941 123715238 -118949115 - AluSg SINE Alu -20 290 1 238 314 59 0 chr1 123715524 123715626 -118948727 - MIR SINE MIR -17 245 138 284 404 15 0 chr1 123715652 123715788 -118948565 + L2 LINE L2 2925 3062 -210 243 390 15 22 chr1 123715893 123716029 -118948324 + L2 LINE L2 3134 3268 -4 2083 120 14 0 chr1 123716649 123716940 -118947413 + AluSx SINE Alu 1 295 -17 1891 155 0 26 chr1 123717611 123717921 -118946432 - AluJb SINE Alu -10 302 1 1156 94 0 19 chr1 123717926 123718085 -118946268 - AluSc SINE Alu -19 290 135 690 36 0 12 chr1 123718091 123718174 -118946179 + AluSx SINE Alu 54 135 -177 1732 128 0 0 chr1 123718174 123718417 -118945936 + AluSx SINE Alu 50 292 -20 2192 123 0 13 chr1 123718591 123718907 -118945446 + AluSx SINE Alu 1 312 0 1052 146 13 0 chr1 123718907 123719086 -118945267 + AluSx SINE Alu 134 314 0 244 281 0 0 chr1 123719119 123719176 -118945177 - L1MD3 LINE L1 -17 7978 7922 * 2873 218 104 12 chr1 123719163 123720048 -118944305 - L1MC4 LINE L1 -132 7910 7107 2043 110 3 37 chr1 123720048 123720347 -118944006 - AluSx SINE Alu -15 297 9 2205 102 0 3 chr1 123720352 123720646 -118943707 - AluSg SINE Alu -17 293 1 2873 218 104 12 chr1 123720646 123720697 -118943656 - L1MC4 LINE L1 -938 7104 6711 32 43 0 0 chr1 123720852 123720898 -118943455 + AT_rich Low_complexity Low_complexity 1 46 0 1638 196 7 3 chr1 123720904 123721190 -118943163 - AluJo SINE Alu -25 287 1 2337 88 0 0 chr1 123721190 123721484 -118942869 - AluSx SINE Alu -18 294 1 234 187 114 106 chr1 123721492 123721615 -118942738 + MER113 DNA MER1_type? 2 125 -396 2427 65 0 0 chr1 123723208 123723501 -118940852 - AluY SINE Alu -18 293 1 417 283 56 18 chr1 123723776 123723929 -118940424 - MER5A DNA MER1_type -18 171 4 1265 207 14 5 chr1 123723944 123724161 -118940192 + MER58A DNA MER1_type 5 223 -1 2305 92 7 3 chr1 123724697 123725002 -118939351 + AluSq SINE Alu 3 308 -5 510 320 34 24 chr1 123725501 123725707 -118938646 + MIR SINE MIR 34 241 -21 208 316 10 71 chr1 123726072 123726170 -118938183 + L2 LINE L2 2605 2696 -618 524 182 52 58 chr1 123726360 123726514 -118937839 + L1MA10 LINE L1 6182 6334 0 2263 100 0 7 chr1 123727117 123727418 -118936935 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr1 123729423 123729446 -118934907 + AT_rich Low_complexity Low_complexity 1 23 0 698 159 0 26 chr1 123729446 123729582 -118934771 + FLAM_A SINE Alu 25 142 0 216 0 0 0 chr1 123730238 123730262 -118934091 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 285 299 23 0 chr1 123730270 123730357 -118933996 + L2 LINE L2 3225 3313 0 1013 88 0 0 chr1 123731440 123731565 -118932788 + AluSg/x SINE Alu 167 291 -19 370 72 12 18 chr1 123731567 123731633 -118932720 - Alu SINE Alu -250 52 1 250 242 141 67 chr1 123731667 123731816 -118932537 - MIR SINE MIR -95 167 8 21 0 0 0 chr1 123731977 123731998 -118932355 + AT_rich Low_complexity Low_complexity 1 21 0 693 151 0 71 chr1 123732030 123732156 -118932197 - AluJ SINE Alu -181 131 15 192 216 0 0 chr1 123732166 123732217 -118932136 + CT-rich Low_complexity Low_complexity 3 53 0 1522 184 51 24 chr1 123732217 123732510 -118931843 - AluJo SINE Alu -11 301 1 201 266 62 16 chr1 123732586 123732650 -118931703 - L2 LINE L2 -4 3268 3202 1165 127 6 6 chr1 123733257 123733423 -118930930 - FRAM SINE Alu -15 161 1 434 211 64 0 chr1 123733498 123733607 -118930746 - L1MB5 LINE L1 0 6174 6059 339 25 0 0 chr1 123734089 123734129 -118930224 + (TC)n Simple_repeat Simple_repeat 1 40 0 674 71 0 10 chr1 123734165 123734263 -118930090 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 751 170 0 9 chr1 123734263 123734375 -118929978 - FLAM_A SINE Alu -25 117 7 2238 91 0 24 chr1 123734661 123734957 -118929396 - AluSg1 SINE Alu -20 289 1 1177 189 117 102 chr1 123734993 123735338 -118929015 + L1MC4 LINE L1 7548 7904 -138 2284 122 0 3 chr1 123735338 123735649 -118928704 + AluSx SINE Alu 1 310 -2 1177 189 117 102 chr1 123735649 123735791 -118928562 + L1MC4 LINE L1 7904 8042 0 2127 117 3 3 chr1 123736369 123736660 -118927693 - AluSx SINE Alu -21 291 1 287 277 0 115 chr1 123736743 123736823 -118927530 + L2 LINE L2 3183 3240 -73 2199 129 7 0 chr1 123736823 123737133 -118927220 - AluSx SINE Alu 0 312 1 287 277 0 115 chr1 123737133 123737200 -118927153 + L2 LINE L2 3240 3313 0 458 299 86 54 chr1 123737215 123737436 -118926917 + L2 LINE L2 3045 3272 0 180 0 0 0 chr1 123739214 123739234 -118925119 + (CGG)n Simple_repeat Simple_repeat 2 21 0 39 50 0 0 chr1 123739288 123739348 -118925005 + GC_rich Low_complexity Low_complexity 1 60 0 24 0 0 0 chr1 123739502 123739526 -118924827 + GC_rich Low_complexity Low_complexity 1 24 0 268 296 125 62 chr1 123741765 123741873 -118922480 + MIR3 SINE MIR 1 126 -82 1766 146 29 32 chr1 123741873 123742181 -118922172 - AluSx SINE Alu -5 307 1 268 296 125 62 chr1 123742181 123742248 -118922105 + MIR3 SINE MIR 126 187 -21 214 374 43 24 chr1 123742768 123742979 -118921374 - L2 LINE L2 -337 2977 2763 1647 124 23 23 chr1 123743101 123743358 -118920995 + AluJb SINE Alu 12 268 -44 1364 183 3 130 chr1 123744167 123744512 -118919841 + AluJo SINE Alu 2 302 0 5323 101 20 12 chr1 123744522 123745323 -118919030 - L1PA15 LINE L1 0 6165 5359 2035 109 0 0 chr1 123745975 123746232 -118918121 - AluSg SINE Alu -19 291 35 224 316 114 9 chr1 123747073 123747187 -118917166 - L2 LINE L2 -4 3268 3143 1691 192 0 17 chr1 123747476 123747773 -118916580 - AluJb SINE Alu -20 292 1 691 169 81 8 chr1 123747784 123747908 -118916445 - FLAM_C SINE Alu 0 133 1 2052 130 3 7 chr1 123748130 123748430 -118915923 + AluSx SINE Alu 1 299 -13 396 0 0 0 chr1 123748433 123748477 -118915876 + (CA)n Simple_repeat Simple_repeat 2 45 0 503 183 87 0 chr1 123748556 123748660 -118915693 - MIR SINE MIR -30 232 120 1068 107 33 148 chr1 123748669 123748912 -118915441 - AluJb SINE Alu -13 299 85 475 297 75 28 chr1 123748914 123749126 -118915227 - L2 LINE L2 -857 2457 2236 919 120 0 47 chr1 123749468 123749618 -118914735 - FLAM_C SINE Alu 0 143 1 269 307 79 0 chr1 123749637 123749764 -118914589 - L3 LINE CR1 -473 1104 968 2259 63 0 14 chr1 123751258 123751576 -118912777 - AluY SINE Alu 0 314 1 1789 140 31 14 chr1 123751578 123751871 -118912482 - AluSq SINE Alu -15 298 1 22 0 0 0 chr1 123752201 123752223 -118912130 + AT_rich Low_complexity Low_complexity 1 22 0 3908 134 22 57 chr1 123752600 123753322 -118911031 - L1MB4 LINE L1 -6 6174 5478 1539 167 3 78 chr1 123753310 123753645 -118910708 - AluJo SINE Alu -2 310 1 4621 182 80 51 chr1 123753645 123753680 -118910673 - L1MB4 LINE L1 -330 5850 5827 1985 148 26 0 chr1 123753680 123753985 -118910368 - AluSq SINE Alu 0 313 1 2061 98 80 0 chr1 123753994 123754280 -118910073 - AluSc SINE Alu 0 309 1 4621 182 80 51 chr1 123754280 123754364 -118909989 - L1MB4 LINE L1 -360 5820 5740 1766 177 0 3 chr1 123754364 123754670 -118909683 - AluJb SINE Alu 0 305 1 4621 182 80 51 chr1 123754670 123755489 -118908864 - L1MB4 LINE L1 -440 5740 4524 224 236 0 69 chr1 123757439 123757511 -118906842 - MIR3 SINE MIR -14 194 128 667 82 124 0 chr1 123757787 123757884 -118906469 - AluJb SINE Alu -14 298 190 2172 114 3 0 chr1 123758234 123758532 -118905821 - AluSq SINE Alu -14 299 1 2364 103 0 3 chr1 123758982 123759294 -118905059 - AluSx SINE Alu -1 311 1 856 234 16 43 chr1 123759856 123759904 -118904449 + MIR SINE MIR 13 61 -201 1996 137 10 3 chr1 123759904 123760197 -118904156 - AluSx SINE Alu -17 295 1 856 234 16 43 chr1 123760197 123760292 -118904061 + MIR SINE MIR 61 157 -105 805 178 30 6 chr1 123760292 123760461 -118903892 - MER104 DNA MER2_type -3 177 5 856 234 16 43 chr1 123760461 123760573 -118903780 + MIR SINE MIR 157 262 0 568 207 25 0 chr1 123760736 123760857 -118903496 + MIR SINE MIR 30 153 -109 980 232 63 0 chr1 123761023 123761260 -118903093 - MIR SINE MIR -1 261 10 2010 124 31 7 chr1 123761341 123761632 -118902721 - AluSq SINE Alu -13 300 3 1427 261 9 3 chr1 123761699 123762032 -118902321 + MER46C DNA MER2_type 2 336 -2 2579 102 127 5 chr1 123762197 123762598 -118901755 + LTR7 LTR ERV1 1 450 0 2750 189 25 48 chr1 123764144 123764711 -118899642 + MER41C LTR ERV1 1 554 0 581 268 13 61 chr1 123765683 123765796 -118898557 - MIR SINE MIR -43 219 121 1579 119 18 0 chr1 123765796 123766022 -118898331 + MER30 DNA MER1_type 1 230 0 581 268 13 61 chr1 123766022 123766136 -118898217 - MIR SINE MIR -141 121 3 4713 137 19 3 chr1 123766761 123767188 -118897165 - MER50 LTR ERV1 -24 710 266 3561 55 0 7 chr1 123767188 123767639 -118896714 + LTR7 LTR ERV1 1 448 -2 4713 137 19 3 chr1 123767639 123767910 -118896443 - MER50 LTR ERV1 -468 266 1 1091 131 46 89 chr1 123767915 123768174 -118896179 - LTR23 LTR ERV1 -5 432 185 1076 121 10 71 chr1 123768238 123768436 -118895917 - LTR23 LTR ERV1 -251 186 1 262 257 14 0 chr1 123768436 123768506 -118895847 - L2 LINE L2 -4 3309 3239 2688 129 34 50 chr1 123768537 123769271 -118895082 + MER4E LTR ERV1 1 779 0 379 253 6 80 chr1 123769354 123769516 -118894837 - L2 LINE L2 -215 3057 2908 1132 145 11 6 chr1 123769700 123769879 -118894474 - LTR26E LTR ERV1 -442 180 1 * 1389 235 109 11 chr1 123769879 123770335 -118894018 + MLT1F LTR MaLR 51 542 0 434 209 8 0 chr1 123770433 123770562 -118893791 + (TCCA)n Simple_repeat Simple_repeat 1 130 0 478 257 38 0 chr1 123770568 123770673 -118893680 + L2 LINE L2 3202 3310 -3 193 279 73 0 chr1 123772218 123772286 -118892067 - L2 LINE L2 -42 3230 3158 358 274 25 57 chr1 123772305 123772462 -118891891 - MIR SINE MIR -42 220 69 1463 254 42 21 chr1 123772919 123773400 -118890953 + L2 LINE L2 2166 2656 -658 2008 214 47 92 chr1 123773602 123774181 -118890172 - MLT1E LTR MaLR 0 593 41 277 248 220 8 chr1 123774182 123774432 -118889921 - L2 LINE L2 -1312 2002 1700 185 346 43 43 chr1 123774673 123774997 -118889356 - L2 LINE L2 -1648 1666 1343 858 226 62 7 chr1 123775034 123775482 -118888871 - L1MD3 LINE L1 -148 7847 7245 * 1499 176 35 123 chr1 123775481 123775724 -118888629 - L1MC4 LINE L1 -953 7089 6826 1574 223 21 29 chr1 123775724 123776101 -118888252 + MLT1A2 LTR MaLR 1 374 0 1499 176 35 123 chr1 123776101 123776140 -118888213 - L1MC4 LINE L1 -1216 6826 6785 2068 146 0 19 chr1 123776140 123776456 -118887897 - AluSx SINE Alu 0 312 3 1499 176 35 123 chr1 123776456 123776626 -118887727 - L1MC4 LINE L1 -1257 6785 6676 703 217 72 72 chr1 123777120 123777137 -118887216 - MLT1A2 LTR MaLR 0 378 363 2631 214 31 9 chr1 123777137 123777679 -118886674 - MLT2B3 LTR ERVL 0 554 1 703 217 72 72 chr1 123777679 123777929 -118886424 - MLT1A2 LTR MaLR -15 363 149 1871 179 3 0 chr1 123777929 123778225 -118886128 - AluJb SINE Alu -15 297 1 703 217 72 72 chr1 123778225 123778366 -118885987 - MLT1A2 LTR MaLR -229 149 10 739 278 68 39 chr1 123778833 123778960 -118885393 + LTR67 LTR ERVL 234 356 -201 2201 126 0 10 chr1 123778960 123779270 -118885083 - AluJb SINE Alu -5 307 1 739 278 68 39 chr1 123779270 123779451 -118884902 + LTR67 LTR ERVL 356 551 -6 236 339 8 23 chr1 123779762 123779892 -118884461 - MER5A DNA MER1_type -25 164 37 1019 119 12 12 chr1 123780152 123780312 -118884041 + AluSx SINE Alu 1 160 -152 25 0 0 0 chr1 123781355 123781380 -118882973 + AT_rich Low_complexity Low_complexity 1 25 0 1506 76 5 0 chr1 123781611 123781809 -118882544 - L1PB1 LINE L1 -7 6144 5946 258 226 16 32 chr1 123782095 123782157 -118882196 - MLT1K LTR MaLR -326 262 202 311 195 253 11 chr1 123782367 123782454 -118881899 - FLAM_A SINE Alu 0 133 26 369 170 52 33 chr1 123783058 123783527 -118880826 + (TG)n Simple_repeat Simple_repeat 1 478 0 183 304 18 0 chr1 123783714 123783770 -118880583 - MIR SINE MIR -1 261 205 840 220 12 0 chr1 123783817 123783990 -118880363 - MIR SINE MIR -54 208 34 227 246 15 15 chr1 123785261 123785326 -118879027 + MIR SINE MIR 76 140 -68 267 262 65 28 chr1 123785595 123785702 -118878651 + MIR SINE MIR 39 149 -59 654 280 92 3 chr1 123786217 123786524 -118877829 + MLT1J2 LTR MaLR 101 450 0 274 323 81 8 chr1 123786626 123786750 -118877603 - L2 LINE L2 -16 3297 3165 4740 70 2 10 chr1 123787112 123787699 -118876654 + LTR5 LTR ERVK 1 582 -387 1758 138 165 6 chr1 123788276 123788603 -118875750 + MSTA LTR MaLR 1 379 -49 901 149 153 33 chr1 123788592 123788834 -118875519 - THE1C LTR MaLR -104 271 1 * 231 248 19 76 chr1 123788835 123788940 -118875413 - L2 LINE L2 -522 2792 2694 402 251 27 45 chr1 123788940 123789163 -118875190 + L1MC5 LINE L1 7463 7681 -280 23 78 0 0 chr1 123789343 123789394 -118874959 + AT_rich Low_complexity Low_complexity 1 51 0 395 149 116 50 chr1 123789400 123789521 -118874832 - L2 LINE L2 -614 2700 2572 767 160 8 0 chr1 123789523 123789648 -118874705 + MER52A LTR ERV1 3 128 -1627 * 4535 181 175 7 chr1 123789644 123790526 -118873827 + MER52A LTR ERV1 721 1750 -5 219 180 80 0 chr1 123790556 123790606 -118873747 - L2 LINE L2 -773 2541 2488 485 41 0 27 chr1 123790748 123790821 -118873532 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1726 167 18 3 chr1 123790822 123791104 -118873249 - AluJb SINE Alu -26 286 1 250 111 22 0 chr1 123792529 123792574 -118871779 + Alu SINE Alu 256 301 -1 480 237 104 7 chr1 123793554 123793689 -118870664 + MER5A DNA MER1_type 35 182 -7 32 0 0 23 chr1 123794476 123794499 -118869854 + AT_rich Low_complexity Low_complexity 1 24 -18 2160 113 0 23 chr1 123794499 123794799 -118869554 - AluSq SINE Alu -20 293 1 32 0 0 23 chr1 123794799 123794818 -118869535 + AT_rich Low_complexity Low_complexity 24 42 0 240 279 12 12 chr1 123796356 123796442 -118867911 - L3 LINE CR1 -89 1488 1403 353 232 72 29 chr1 123796952 123797090 -118867263 - L2 LINE L2 -12 3301 3158 770 206 0 7 chr1 123797092 123797233 -118867120 + AluJb SINE Alu 2 141 -171 2278 133 43 0 chr1 123797233 123797624 -118866729 + L1P5 LINE L1 5278 5685 -466 656 239 0 19 chr1 123797752 123797911 -118866442 + FAM SINE Alu 10 165 -20 689 255 101 62 chr1 123798099 123798167 -118866186 - L1ME4a LINE L1 -153 5968 5904 1668 163 0 59 chr1 123798167 123798487 -118865866 - AluJb SINE Alu -11 301 1 689 255 101 62 chr1 123798487 123798873 -118865480 - L1ME4a LINE L1 -217 5904 5496 209 280 0 0 chr1 123798972 123799022 -118865331 + (TG)n Simple_repeat Simple_repeat 2 51 0 200 204 23 0 chr1 123799712 123799756 -118864597 + (CCCCAG)n Simple_repeat Simple_repeat 3 47 0 616 241 54 108 chr1 123802520 123802835 -118861518 - MLT1I LTR MaLR 0 409 112 213 382 34 22 chr1 123803118 123803296 -118861057 - L2 LINE L2 -173 3099 2920 342 0 0 0 chr1 123806172 123806210 -118858143 + (TC)n Simple_repeat Simple_repeat 2 39 0 565 290 98 16 chr1 123807840 123808023 -118856330 - MIR3 SINE MIR -9 199 2 2427 73 0 0 chr1 123810197 123810500 -118853853 - AluY SINE Alu -8 303 1 210 286 16 32 chr1 123810563 123810626 -118853727 - L3b LINE CR1 -83 1500 1439 318 318 37 9 chr1 123811593 123811700 -118852653 - MIR3 SINE MIR -98 110 1 797 175 0 0 chr1 123815599 123815725 -118848628 - FLAM_A SINE Alu -7 126 1 214 217 22 0 chr1 123815871 123815917 -118848436 + MIR3 SINE MIR 155 201 -7 348 294 11 0 chr1 123816346 123816438 -118847915 - L2 LINE L2 0 3313 3221 727 227 177 0 chr1 123817844 123818042 -118846311 - MIR SINE MIR -11 251 19 195 42 0 0 chr1 123819206 123819230 -118845123 + (TCCA)n Simple_repeat Simple_repeat 1 24 0 579 256 41 119 chr1 123819233 123819376 -118844977 - L2 LINE L2 0 3313 3160 1354 107 5 29 chr1 123819376 123819582 -118844771 - L1PA16 LINE L1 -10 6156 5956 579 256 41 119 chr1 123819582 123819782 -118844571 - L2 LINE L2 -153 3160 2997 205 195 0 0 chr1 123819761 123819802 -118844551 - L2 LINE L2 -833 2481 2441 * 532 310 27 32 chr1 123820798 123820985 -118843368 - MIR SINE MIR -6 256 71 587 238 57 62 chr1 123822934 123823127 -118841226 + MIR3 SINE MIR 11 202 -6 476 360 7 7 chr1 123823793 123823932 -118840421 + L2 LINE L2 3134 3272 0 561 260 6 64 chr1 123824022 123824195 -118840158 + MIR SINE MIR 100 262 0 285 310 78 71 chr1 123824329 123824597 -118839756 - L2 LINE L2 -190 3082 2813 284 222 67 22 chr1 123824798 123824888 -118839465 - L2 LINE L2 -56 3257 3164 216 276 236 15 chr1 123825286 123825485 -118838868 + L2 LINE L2 2521 2763 -551 767 260 65 24 chr1 123825755 123826001 -118838352 - MIR SINE MIR -1 261 6 241 288 54 76 chr1 123826004 123826188 -118838165 + L2 LINE L2 2885 3064 -208 254 211 105 0 chr1 123826277 123826353 -118838000 + MIR SINE MIR 139 222 -40 1369 273 169 18 chr1 123827839 123828672 -118835681 + L2 LINE L2 2025 2991 -322 441 225 28 106 chr1 123828706 123828760 -118835593 + L2 LINE L2 3140 3197 -75 588 233 147 0 chr1 123828760 123828910 -118835443 - MER96 DNA MER1_type 0 175 4 441 225 28 106 chr1 123828910 123828997 -118835356 + L2 LINE L2 3197 3270 -2 322 345 51 9 chr1 123829179 123829319 -118835034 + MER5A DNA MER1_type 25 182 -7 374 240 221 13 chr1 123829696 123829850 -118834503 + MER5A DNA MER1_type 4 189 0 357 283 119 60 chr1 123829970 123830026 -118834327 - MIR SINE MIR -7 255 204 2134 92 14 0 chr1 123830026 123830318 -118834035 - AluSg SINE Alu -14 296 1 357 283 119 60 chr1 123830318 123830504 -118833849 - MIR SINE MIR -58 204 3 289 244 56 14 chr1 123831686 123831786 -118832567 + MIR SINE MIR 20 121 -87 480 303 8 0 chr1 123832349 123832471 -118831882 + MIR3 SINE MIR 44 166 -42 202 280 80 0 chr1 123833742 123833817 -118830536 - MIR3 SINE MIR -19 189 109 633 268 147 22 chr1 123834038 123834262 -118830091 - MIR SINE MIR -4 258 7 2269 80 0 0 chr1 123834391 123834690 -118829663 + AluY SINE Alu 1 299 -12 344 292 0 0 chr1 123834705 123834794 -118829559 - MIR SINE MIR -70 192 104 362 261 126 8 chr1 123835206 123835325 -118829028 + MIR SINE MIR 74 206 -56 294 212 263 0 chr1 123836280 123836398 -118827955 + MIR SINE MIR 53 201 -61 205 230 289 15 chr1 123836516 123836647 -118827706 - MIR3 SINE MIR -40 168 17 184 273 45 30 chr1 123836728 123836794 -118827559 + MIR SINE MIR 76 142 -66 1454 121 0 5 chr1 123837209 123837424 -118826929 + AluSg/x SINE Alu 95 308 -4 1018 148 0 18 chr1 123837424 123837593 -118826760 + AluJo/FRAM SINE Alu 134 299 -13 424 198 0 25 chr1 123837736 123837817 -118826536 + Tigger5 DNA MER2_type 1 79 -2244 327 180 82 0 chr1 123837819 123837880 -118826473 - Tigger5 DNA MER2_type -6 2317 2252 * 464 184 58 0 chr1 123837861 123837948 -118826405 + Tigger5 DNA MER2_type 2232 2323 0 768 288 167 42 chr1 123838126 123838702 -118825651 + L2 LINE L2 2140 2787 -527 1902 125 11 0 chr1 123838770 123839057 -118825296 - AluSc SINE Alu -19 290 1 867 238 108 4 chr1 123840053 123840284 -118824069 + MIR SINE MIR 2 256 -6 306 0 0 0 chr1 123840825 123840859 -118823494 + (CA)n Simple_repeat Simple_repeat 2 35 0 203 206 0 0 chr1 123841450 123841484 -118822869 - L2 LINE L2 -15 3298 3265 198 274 20 0 chr1 123841451 123841502 -118822851 - MIR SINE MIR -10 252 201 * 232 285 126 3 chr1 123841563 123841709 -118822644 - MIR SINE MIR -67 141 31 330 87 0 0 chr1 123843053 123843099 -118821254 + (CACCC)n Simple_repeat Simple_repeat 5 50 0 1609 170 0 27 chr1 123843462 123843762 -118820591 - AluJo SINE Alu -20 292 1 1790 155 0 20 chr1 123844205 123844508 -118819845 + AluJb SINE Alu 1 297 -15 495 323 35 20 chr1 123845163 123845364 -118818989 + MIR SINE MIR 59 262 0 311 288 38 0 chr1 123846822 123846902 -118817451 + MIR SINE MIR 33 115 -93 785 258 4 69 chr1 123848687 123848947 -118815406 - MIR SINE MIR -5 257 15 699 120 0 0 chr1 123850062 123850170 -118814183 + (TTCC)n Simple_repeat Simple_repeat 2 109 0 249 304 157 0 chr1 123851225 123851327 -118813026 - MIR SINE MIR -94 168 51 232 363 14 34 chr1 123851435 123851581 -118812772 - MIR SINE MIR -67 195 53 551 326 74 9 chr1 123852264 123852479 -118811874 + MIR SINE MIR 27 255 -7 2063 123 0 3 chr1 123852989 123853291 -118811062 + AluSx SINE Alu 1 301 -11 1432 162 52 58 chr1 123853546 123853617 -118810736 - L1MC1 LINE L1 0 6333 6263 2077 148 3 0 chr1 123853617 123853928 -118810425 + AluSx SINE Alu 1 312 0 1432 162 52 58 chr1 123853928 123854185 -118810168 - L1MC1 LINE L1 -70 6263 6008 406 286 86 47 chr1 123854865 123854886 -118809467 + L1ME4a LINE L1 5573 5592 -529 2635 27 0 0 chr1 123854886 123855182 -118809171 - AluY SINE Alu -15 296 1 406 286 86 47 chr1 123855182 123855415 -118808938 + L1ME4a LINE L1 5592 5837 -284 254 368 52 60 chr1 123855590 123855758 -118808595 - L2 LINE L2 -338 2976 2808 1872 154 0 3 chr1 123855758 123856056 -118808297 + AluSx SINE Alu 1 297 -15 254 368 52 60 chr1 123856056 123856352 -118808001 - L2 LINE L2 -506 2808 2516 25 51 0 0 chr1 123856434 123856473 -118807880 + AT_rich Low_complexity Low_complexity 1 39 0 323 323 94 0 chr1 123857574 123857670 -118806683 + L2 LINE L2 3147 3251 -21 230 274 0 16 chr1 123858533 123858595 -118805758 + CT-rich Low_complexity Low_complexity 2 62 0 212 279 0 33 chr1 123859644 123859705 -118804648 + MIR SINE MIR 188 246 -16 2139 130 0 0 chr1 123860439 123860732 -118803621 - AluSx SINE Alu -19 293 1 2011 159 0 0 chr1 123861841 123862137 -118802216 + AluSx SINE Alu 3 298 -14 320 241 133 57 chr1 123862456 123862614 -118801739 + MIR SINE MIR 49 218 -44 1629 156 0 50 chr1 123863576 123863858 -118800495 + AluJb SINE Alu 1 268 -44 2277 102 3 13 chr1 123863948 123864261 -118800092 + AluSx SINE Alu 1 310 -2 325 246 36 58 chr1 123864274 123864412 -118799941 + MIR SINE MIR 74 208 -54 2088 104 21 0 chr1 123864708 123865018 -118799335 + AluSx SINE Alu 1 316 0 1752 141 31 0 chr1 123865155 123865411 -118798942 + AluSx SINE Alu 1 264 -48 474 18 0 0 chr1 123865422 123865477 -118798876 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 203 184 0 0 chr1 123865507 123865545 -118798808 + (TA)n Simple_repeat Simple_repeat 1 38 0 2176 84 12 59 chr1 123866224 123866546 -118797807 + AluY SINE Alu 1 307 -4 301 235 81 54 chr1 123866700 123866866 -118797487 + L1ME4a LINE L1 5881 6056 -65 2073 154 0 0 chr1 123866866 123867178 -118797175 + AluJo SINE Alu 1 312 0 301 235 81 54 chr1 123867178 123867232 -118797121 + L1ME4a LINE L1 6056 6107 -14 28 29 0 0 chr1 123867280 123867315 -118797038 + AT_rich Low_complexity Low_complexity 1 35 0 439 316 107 17 chr1 123868457 123868634 -118795719 - MIR SINE MIR -50 212 20 315 161 0 0 chr1 123868666 123868722 -118795631 + (TA)n Simple_repeat Simple_repeat 1 56 0 2383 62 0 7 chr1 123868722 123869013 -118795340 - AluY SINE Alu -22 289 1 246 281 52 65 chr1 123869321 123869474 -118794879 + L2 LINE L2 2286 2436 -878 424 264 47 93 chr1 123869484 123869893 -118794460 + MLT1J LTR MaLR 15 404 -107 1999 163 10 7 chr1 123869923 123870229 -118794124 - 7SLRNA srpRNA srpRNA -13 307 1 2531 88 0 0 chr1 123870255 123870562 -118793791 + AluSc SINE Alu 1 307 -2 208 329 136 13 chr1 123870625 123870780 -118793573 + L2 LINE L2 2579 2752 -562 2286 98 0 0 chr1 123870781 123871067 -118793286 - AluSx SINE Alu -21 291 6 476 266 112 24 chr1 123871110 123871520 -118792833 + L1ME4a LINE L1 5676 6121 0 1144 71 19 0 chr1 123871742 123871896 -118792457 - L1PA7 LINE L1 -3 6151 5995 21 36 0 0 chr1 123872876 123872904 -118791449 + AT_rich Low_complexity Low_complexity 1 28 0 774 256 68 0 chr1 123872908 123873099 -118791254 - MIR SINE MIR -55 207 4 1594 153 47 22 chr1 123873297 123873572 -118790781 - AluJo SINE Alu -30 282 1 1818 139 36 10 chr1 123873808 123874111 -118790242 + AluJb SINE Alu 1 311 -1 269 255 223 0 chr1 123874132 123874290 -118790063 + MIR SINE MIR 18 215 -47 250 209 93 58 chr1 123874577 123874663 -118789690 + L2 LINE L2 3189 3277 -36 21 0 0 0 chr1 123876149 123876170 -118788183 + AT_rich Low_complexity Low_complexity 1 21 0 206 354 76 0 chr1 123876396 123876475 -118787878 - MIR3 SINE MIR -21 187 103 1133 107 13 0 chr1 123877934 123878093 -118786260 - AluSg/x SINE Alu -20 290 130 2121 142 7 0 chr1 123881459 123881768 -118782585 + AluSx SINE Alu 1 311 -1 892 161 0 7 chr1 123882078 123882215 -118782138 + AluJ SINE Alu 1 136 -176 2177 111 0 0 chr1 123882215 123882495 -118781858 + AluSg SINE Alu 1 280 -30 526 115 51 0 chr1 123882514 123882670 -118781683 + (TA)n Simple_repeat Simple_repeat 2 165 0 858 186 72 6 chr1 123882672 123882839 -118781514 + AluJ SINE Alu 135 312 0 257 155 17 0 chr1 123882843 123882901 -118781452 + GA-rich Low_complexity Low_complexity 2 60 0 1584 179 25 11 chr1 123883327 123883612 -118780741 + AluJb SINE Alu 1 289 -23 2261 97 0 22 chr1 123883620 123883940 -118780413 + AluSq SINE Alu 1 313 0 628 178 164 0 chr1 123884117 123884269 -118780084 + MER3 DNA MER1_type 1 130 -79 198 327 18 0 chr1 123884810 123884865 -118779488 - L2 LINE L2 -8 3264 3209 700 220 187 9 chr1 123885008 123885222 -118779131 - MIR SINE MIR -10 252 1 418 298 61 55 chr1 123885225 123885406 -118778947 + MIR3 SINE MIR 23 204 -4 1418 145 93 48 chr1 123885478 123885768 -118778585 - AluJo SINE Alu -9 303 1 492 242 38 0 chr1 123886952 123887084 -118777269 + L1ME3 LINE L1 6019 6155 -7 29 0 0 0 chr1 123887093 123887122 -118777231 + AT_rich Low_complexity Low_complexity 1 29 0 2200 86 7 0 chr1 123887321 123887628 -118776725 - AluSg SINE Alu 0 310 2 361 296 55 34 chr1 123887734 123887948 -118776405 - MIR SINE MIR -42 220 5 23 0 0 0 chr1 123890296 123890319 -118774034 + AT_rich Low_complexity Low_complexity 1 23 0 1359 195 13 0 chr1 123891337 123891573 -118772780 + AluJb SINE Alu 4 242 -70 512 204 95 7 chr1 123893530 123893677 -118770676 - MER58B DNA MER1_type 0 341 182 1873 141 20 3 chr1 123893893 123894190 -118770163 - AluJb SINE Alu -10 302 1 2108 128 3 3 chr1 123894190 123894487 -118769866 - AluSx SINE Alu -14 298 1 324 266 119 18 chr1 123894665 123894774 -118769579 - MIR SINE MIR -114 148 29 26 30 0 0 chr1 123895309 123895342 -118769011 + AT_rich Low_complexity Low_complexity 1 33 0 981 50 0 0 chr1 123895342 123895461 -118768892 - AluSg SINE Alu -191 119 1 425 295 129 36 chr1 123896573 123896851 -118767502 + L2 LINE L2 2985 3288 -25 846 180 19 19 chr1 123897032 123897193 -118767160 - AluJb SINE Alu -17 295 135 663 221 129 6 chr1 123897269 123897432 -118766921 - MER5A DNA MER1_type -6 183 1 647 283 51 59 chr1 123897734 123897941 -118766412 - MIR SINE MIR -24 238 32 1878 171 3 0 chr1 123897941 123898239 -118766114 - AluJb SINE Alu -13 299 1 647 283 51 59 chr1 123898239 123898268 -118766085 - MIR SINE MIR -230 32 4 690 30 59 10 chr1 123900024 123900125 -118764228 + HY1 scRNA scRNA 1 106 -6 223 303 66 0 chr1 123900217 123900293 -118764060 + L2 LINE L2 2196 2276 -1038 229 185 233 68 chr1 123900378 123900524 -118763829 - MIR SINE MIR -13 249 80 211 257 107 4 chr1 123901049 123901157 -118763196 - MIR SINE MIR -64 144 37 2296 89 0 3 chr1 123901410 123901702 -118762651 - AluY SINE Alu -19 292 2 21 0 0 0 chr1 123901819 123901840 -118762513 + AT_rich Low_complexity Low_complexity 1 21 0 1012 172 72 43 chr1 123902210 123902419 -118761934 + MER20 DNA MER1_type 4 218 -1 701 128 0 74 chr1 123904051 123904132 -118760221 - MER30B DNA MER1_type -36 194 127 2004 128 11 0 chr1 123904132 123904413 -118759940 - AluSx SINE Alu -23 289 6 701 128 0 74 chr1 123904413 123904479 -118759874 - MER30B DNA MER1_type -103 127 58 382 109 0 0 chr1 123904489 123904544 -118759809 + MER30B DNA MER1_type 1 55 -135 2441 86 0 0 chr1 123905550 123905854 -118758499 + AluSc SINE Alu 1 304 -5 200 363 97 0 chr1 123907211 123907324 -118757029 - L2 LINE L2 -2 3270 3147 430 297 77 44 chr1 123908207 123908480 -118755873 + L2 LINE L2 2266 2547 -767 879 207 45 0 chr1 123910476 123910655 -118753698 + MER5A DNA MER1_type 1 187 -2 341 216 103 52 chr1 123910737 123910834 -118753519 + MIR SINE MIR 86 187 -75 1970 152 6 22 chr1 123910966 123911282 -118753071 - AluJb SINE Alu -1 311 1 2496 54 0 0 chr1 123911341 123911635 -118752718 - AluY SINE Alu -17 294 1 644 222 138 0 chr1 123913361 123913528 -118750825 - MIR SINE MIR -36 226 37 281 315 54 0 chr1 123913568 123913660 -118750693 - MER5A DNA MER1_type -84 105 9 787 255 182 39 chr1 123914298 123914613 -118749740 + Charlie7 DNA MER1_type 36 305 -2307 1832 139 24 0 chr1 123914613 123914900 -118749453 + AluSg SINE Alu 1 294 -16 787 255 182 39 chr1 123914900 123915200 -118749153 + Charlie7 DNA MER1_type 305 739 -1873 268 143 0 0 chr1 123915461 123915503 -118748850 - Alu SINE Alu -11 291 250 1973 117 7 37 chr1 123915507 123915807 -118748546 - AluSx SINE Alu -21 291 1 1611 171 54 7 chr1 123916604 123916902 -118747451 + AluJb SINE Alu 1 312 0 353 234 126 27 chr1 123917122 123917233 -118747120 + L2 LINE L2 3190 3311 -2 331 278 102 0 chr1 123917447 123917634 -118746719 + L1ME LINE L1 5547 5752 -369 238 338 7 58 chr1 123917767 123917906 -118746447 - MIR3 SINE MIR -68 140 9 * 289 297 42 25 chr1 123917890 123918008 -118746345 - L2 LINE L2 -2 3311 3192 180 276 92 26 chr1 123918189 123918265 -118746088 + MIR3 SINE MIR 97 177 -31 348 237 32 54 chr1 123918849 123918942 -118745411 + MIR SINE MIR 153 243 -19 192 318 0 0 chr1 123919036 123919099 -118745254 - L3 LINE CR1 -1066 511 449 2230 117 0 0 chr1 123919883 123920182 -118744171 + AluSg SINE Alu 2 300 -10 227 168 75 103 chr1 123920703 123920810 -118743543 - L1ME4a LINE L1 -41 6080 5977 221 302 31 31 chr1 123923234 123923363 -118740990 - L2 LINE L2 -381 2932 2804 266 285 13 25 chr1 123923768 123923879 -118740474 + MIR SINE MIR 88 201 -7 1397 176 97 4 chr1 123924287 123924565 -118739788 + AluJb SINE Alu 1 304 -8 247 325 17 50 chr1 123924709 123924829 -118739524 - MER5B DNA MER1_type -61 117 2 1612 134 53 46 chr1 123925940 123926224 -118738129 + AluJo SINE Alu 1 286 -26 1723 95 0 17 chr1 123926365 123926597 -118737756 - AluSx SINE Alu -84 228 1 181 273 45 30 chr1 123926615 123926681 -118737672 + L2 LINE L2 3227 3293 -20 831 180 160 4 chr1 123927261 123927535 -118736818 - MER33 DNA MER1_type 0 363 1 302 261 11 0 chr1 123928194 123928286 -118736067 + L1MB3 LINE L1 6084 6176 -7 214 280 27 53 chr1 123931225 123931300 -118733053 - L2 LINE L2 -50 3222 3150 2308 85 3 3 chr1 123931758 123932051 -118732302 - AluSg SINE Alu -17 293 1 1066 83 0 0 chr1 123932054 123932186 -118732167 - AluSp SINE Alu -181 132 1 21 0 0 0 chr1 123933214 123933235 -118731118 + AT_rich Low_complexity Low_complexity 1 21 0 1655 190 14 0 chr1 123933333 123933617 -118730736 + AluJb SINE Alu 1 288 -24 451 293 231 10 chr1 123934100 123934331 -118730022 + L2 LINE L2 2772 3054 -259 336 299 0 23 chr1 123934409 123934496 -118729857 + L2 LINE L2 3188 3272 0 3869 53 0 4 chr1 123934582 123935068 -118729285 + L1PA5 LINE L1 5671 6154 0 2489 120 13 16 chr1 123935121 123935497 -118728856 + THE1C LTR MaLR 1 375 0 9974 117 6 59 chr1 123935499 123937164 -118727189 + THE1C-int LTR MaLR 3 1579 -1 2491 86 18 44 chr1 123937165 123937332 -118727021 + THE1C LTR MaLR 1 171 -204 1405 152 21 113 chr1 123937332 123937680 -118726673 - AluYb8 SINE Alu 0 318 1 2491 86 18 44 chr1 123937680 123937897 -118726456 + THE1C LTR MaLR 171 375 0 646 167 83 36 chr1 123937897 123937959 -118726394 - HsTC2 DNA Tc2 -87 1811 1753 1968 136 10 7 chr1 123937959 123938254 -118726099 - AluJb SINE Alu -16 296 1 646 167 83 36 chr1 123938254 123938383 -118725970 - HsTC2 DNA Tc2 -145 1753 1611 300 261 167 17 chr1 123938391 123938571 -118725782 + L1M4 LINE L1 5133 5339 -807 1392 189 34 159 chr1 123938650 123938971 -118725382 - L1MC4a LINE L1 0 7808 7448 1678 120 0 0 chr1 123938971 123939205 -118725148 + AluSq SINE Alu 1 234 -79 1392 189 34 159 chr1 123939205 123939462 -118724891 - L1MC4a LINE L1 -360 7448 7331 2048 127 3 0 chr1 123939462 123939745 -118724608 - AluSx SINE Alu -28 284 1 1392 189 34 159 chr1 123939745 123939867 -118724486 - L1MC4a LINE L1 -477 7331 7195 1249 191 84 30 chr1 123939876 123940268 -118724085 + MLT1C LTR MaLR 6 390 0 400 323 0 0 chr1 123940344 123940468 -118723885 - HsTC2 DNA Tc2 -299 1599 1300 722 191 156 26 chr1 123940473 123940704 -118723649 + MLT1E1 LTR MaLR 5 265 -389 1326 73 0 45 chr1 123940704 123940881 -118723472 + AluSp SINE Alu 133 301 -12 886 263 26 0 chr1 123940936 123941190 -118723163 + MLT1E1 LTR MaLR 325 654 0 321 279 110 4 chr1 123941192 123941384 -118722969 - HsTC2 DNA Tc2 -590 1306 116 26 30 0 0 chr1 123941782 123941815 -118722538 + AT_rich Low_complexity Low_complexity 1 33 0 270 269 94 6 chr1 123941835 123941995 -118722358 + L1ME3A LINE L1 5777 5950 -220 2152 114 13 0 chr1 123942421 123942719 -118721634 + AluSx SINE Alu 1 302 -10 285 219 41 116 chr1 123942871 123943017 -118721336 - LTR67 LTR ERVL -418 139 5 286 223 446 11 chr1 123943714 123943889 -118720464 + MIR SINE MIR 12 262 0 255 254 18 0 chr1 123944214 123944269 -118720084 - MER5A DNA MER1_type -48 141 86 180 125 0 0 chr1 123945584 123945616 -118718737 + (A)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr1 123946766 123946791 -118717562 + AT_rich Low_complexity Low_complexity 1 25 0 376 304 120 31 chr1 123947123 123947314 -118717039 - MIR SINE MIR -13 249 42 202 282 173 27 chr1 123947689 123947799 -118716554 + L2 LINE L2 3179 3304 -9 1661 149 8 19 chr1 123947808 123948076 -118716277 - AluJb SINE Alu -12 300 36 749 221 105 18 chr1 123948143 123948419 -118715934 - HAL1 LINE L1 -3 2504 2205 4670 48 8 2 chr1 123948980 123949566 -118714787 + L1PA6 LINE L1 5565 6154 0 23 54 0 0 chr1 123949636 123949673 -118714680 + AT_rich Low_complexity Low_complexity 1 37 0 606 276 161 18 chr1 123950116 123950402 -118713951 - L3 LINE CR1 -19 1558 1232 245 236 0 18 chr1 123950673 123950728 -118713625 - L2 LINE L2 -5 3267 3214 1661 177 0 10 chr1 123951048 123951171 -118713182 + AluJb SINE Alu 1 124 -188 270 0 0 0 chr1 123951171 123951201 -118713152 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1661 177 0 10 chr1 123951201 123951376 -118712977 + AluJb SINE Alu 124 296 -16 236 349 23 53 chr1 123951763 123951895 -118712458 + MIR3 SINE MIR 3 130 -78 2338 81 13 0 chr1 123953263 123953570 -118710783 - AluSx SINE Alu -1 311 1 2628 146 50 0 chr1 123953585 123954045 -118710308 - L1MB3 LINE L1 0 6183 5701 688 180 72 0 chr1 123954045 123954184 -118710169 - LTR38 LTR ERV1 0 556 408 1410 188 103 3 chr1 123954191 123954531 -118709822 - LTR38-int LTR ERV1 -9 6749 6376 342 183 154 0 chr1 123954524 123954657 -118709696 - LTR38-int LTR ERV1 -615 6143 3951 * 654 195 47 59 chr1 123954857 123955026 -118709327 - LTR38-int LTR ERV1 -4167 3953 3787 453 176 72 52 chr1 123955154 123955307 -118709046 - LTR38-int LTR ERV1 -1865 4733 4578 * 1161 178 38 24 chr1 123955290 123955577 -118708776 - LTR38-int LTR ERV1 -2577 4021 3731 1044 161 85 59 chr1 123955614 123955971 -118708382 - LTR38-int LTR ERV1 -2868 3730 2348 29721 105 13 42 chr1 123955988 123956336 -118708017 - L1PA8 LINE L1 -2 6485 6128 2285 114 3 0 chr1 123956336 123956643 -118707710 - AluSp SINE Alu -5 308 1 29721 105 13 42 chr1 123956643 123957116 -118707237 - L1PA8 LINE L1 -359 6128 5643 2207 92 0 30 chr1 123957116 123957420 -118706933 - AluY SINE Alu -14 297 3 29721 105 13 42 chr1 123957420 123961318 -118703035 - L1PA8 LINE L1 -844 5643 1633 2297 99 0 0 chr1 123961318 123961667 -118702686 - AluSp SINE Alu 0 349 1 186 43 0 0 chr1 123961677 123961700 -118702653 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 29721 105 13 42 chr1 123961700 123962265 -118702088 - L1PA8 LINE L1 -4863 1624 1044 7639 49 5 14 chr1 123962265 123963821 -118700532 - SVA Other Other -799 1386 1 29721 105 13 42 chr1 123963821 123965096 -118699257 - L1PA8 LINE L1 -5443 1044 4 9623 120 60 46 chr1 123965102 123965157 -118699196 - LTR38-int LTR ERV1 0 1786 1733 2484 80 0 0 chr1 123965157 123965456 -118698897 + AluY SINE Alu 1 299 -12 9623 120 60 46 chr1 123965456 123965889 -118698464 - LTR38-int LTR ERV1 -53 1733 1308 6409 151 56 34 chr1 123965889 123966449 -118697904 - LTR57-int LTR ERVL -3717 1626 1080 1727 179 10 3 chr1 123966449 123966739 -118697614 - AluJo SINE Alu -20 292 1 6409 151 56 34 chr1 123966739 123967459 -118696894 - LTR57-int LTR ERVL -4263 1080 318 9623 120 60 46 chr1 123967459 123967879 -118696474 - LTR38-int LTR ERV1 -478 1308 388 1708 151 4 0 chr1 123967890 123968141 -118696212 - LTR38-int LTR ERV1 -1534 252 1 558 192 0 42 chr1 123968159 123968279 -118696074 + LTR38 LTR ERV1 442 556 0 434 182 13 0 chr1 123968279 123968356 -118695997 - L1M3 LINE L1 -479 5704 5627 1996 206 45 35 chr1 123969554 123970016 -118694337 + MLT1C LTR MaLR 1 467 0 467 133 48 12 chr1 123970047 123970130 -118694223 + L1MC1 LINE L1 6245 6330 -3 870 259 28 5 chr1 123971190 123971402 -118692951 - MER20 DNA MER1_type -1 218 2 492 123 0 0 chr1 123971417 123971498 -118692855 - L1M4 LINE L1 -1103 5043 4963 287 233 156 0 chr1 123971498 123971588 -118692765 - MER46C DNA MER2_type -234 104 1 2572 115 120 5 chr1 123971755 123972139 -118692214 - MSTA LTR MaLR 0 428 1 1982 142 23 13 chr1 123972408 123972711 -118691642 + AluSx SINE Alu 1 306 -6 1388 158 0 5 chr1 123973629 123973850 -118690503 + AluJo SINE Alu 87 306 -6 532 153 23 4 chr1 123974343 123974454 -118689899 + L1MB7 LINE L1 6037 6149 -25 1974 129 7 4 chr1 123974476 123974748 -118689605 - AluSx SINE Alu -39 273 1 243 113 48 0 chr1 123974789 123974851 -118689502 + (TA)n Simple_repeat Simple_repeat 2 66 0 802 242 90 16 chr1 123974935 123975179 -118689174 - MIR SINE MIR 0 262 1 771 255 127 55 chr1 123975320 123975736 -118688617 - MLT1H LTR MaLR 0 549 104 180 0 0 0 chr1 123975737 123975757 -118688596 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8048 39 2 136 chr1 123976134 123977363 -118686990 - SVA Other Other -3 1383 319 1131 75 0 0 chr1 123977371 123977504 -118686849 - AluSq/x SINE Alu -179 133 1 1990 132 7 7 chr1 123977539 123977854 -118686499 + AluSq SINE Alu 3 317 0 769 217 0 0 chr1 123977854 123977983 -118686370 - AluJo/FLAM SINE Alu -172 130 2 1543 158 59 7 chr1 123978094 123978366 -118685987 + AluJb SINE Alu 18 303 -9 1899 149 42 36 chr1 123978387 123978722 -118685631 - MER58B DNA MER1_type 0 341 5 1370 205 47 14 chr1 123979337 123979634 -118684719 - AluJo SINE Alu -5 307 1 2412 85 13 0 chr1 123981178 123981483 -118682870 - AluSg SINE Alu 0 310 2 1516 210 7 0 chr1 123982225 123982501 -118681852 + AluJb SINE Alu 1 278 -34 403 143 12 12 chr1 123982501 123982585 -118681768 + GA-rich Low_complexity Low_complexity 1 84 0 2056 113 0 3 chr1 123982790 123983096 -118681257 - AluSx SINE Alu 0 305 1 283 86 0 0 chr1 123983276 123983311 -118681042 - U2 snRNA snRNA -153 35 1 538 110 0 27 chr1 123983440 123983513 -118680840 - FLAM_A SINE Alu -26 116 46 927 336 103 28 chr1 123984122 123984831 -118679522 + L2 LINE L2 1294 2055 -1259 22 35 0 0 chr1 123984969 123984998 -118679355 + AT_rich Low_complexity Low_complexity 1 29 0 1589 185 55 97 chr1 123985049 123985264 -118679089 + L1ME3 LINE L1 5374 5596 -566 1950 102 4 0 chr1 123985264 123985519 -118678834 + AluSx SINE Alu 1 256 -56 1589 185 55 97 chr1 123985519 123985619 -118678734 + L1ME3 LINE L1 5596 5699 -463 2370 94 0 3 chr1 123985619 123985927 -118678426 + AluSc SINE Alu 1 307 -2 1589 185 55 97 chr1 123985927 123985941 -118678412 + L1ME3 LINE L1 5699 5712 -450 1702 186 0 23 chr1 123985941 123986248 -118678105 + AluJb SINE Alu 1 300 -12 1589 185 55 97 chr1 123986248 123986405 -118677948 + L1ME3 LINE L1 5712 5854 -308 263 71 24 0 chr1 123986406 123986448 -118677905 + (TA)n Simple_repeat Simple_repeat 1 43 0 2317 104 0 0 chr1 123986531 123986830 -118677523 + AluSx SINE Alu 1 299 -13 186 171 49 0 chr1 123987121 123987162 -118677191 + MIR SINE MIR 112 154 -108 978 243 133 56 chr1 123987168 123987634 -118676719 + MLT1J LTR MaLR 1 502 -9 365 242 40 0 chr1 123987838 123987859 -118676494 - L1ME4a LINE L1 -13 6108 6089 2287 92 0 10 chr1 123987859 123988164 -118676189 - AluY SINE Alu -9 302 1 365 242 40 0 chr1 123988164 123988266 -118676087 - L1ME4a LINE L1 -32 6089 5980 317 271 155 10 chr1 123988349 123988558 -118675795 - L1ME4a LINE L1 -312 5809 5599 1996 130 7 7 chr1 123988906 123989198 -118675155 + AluSx SINE Alu 1 292 -20 1429 152 9 9 chr1 123989247 123989471 -118674882 - MER2 DNA MER2_type 0 345 122 1096 146 12 0 chr1 123989488 123989652 -118674701 + FAM SINE Alu 1 49 0 636 175 8 25 chr1 123989673 123989793 -118674560 - MER2 DNA MER2_type -226 119 2 254 220 80 30 chr1 123990049 123990149 -118674204 - L1MC/D LINE L1 -1909 5899 5795 327 300 120 10 chr1 123990152 123990252 -118674101 + MER91A DNA MER1_type 1 111 -85 2100 113 7 0 chr1 123990556 123990838 -118673515 - AluSx SINE Alu -8 304 21 1542 176 81 0 chr1 123990840 123991008 -118673345 - AluJo SINE Alu -5 307 154 303 28 0 0 chr1 123991008 123991044 -118673309 + (TG)n Simple_repeat Simple_repeat 2 37 0 1542 176 81 0 chr1 123991044 123991159 -118673194 - AluJo SINE Alu -158 154 1 208 0 0 59 chr1 123991166 123991200 -118673153 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1099 104 0 0 chr1 123991212 123991356 -118672997 - AluSg/x SINE Alu -36 274 131 2487 67 0 32 chr1 123991616 123991932 -118672421 - AluY SINE Alu -5 306 1 2263 108 0 3 chr1 123991979 123992275 -118672078 - AluSq SINE Alu -18 295 1 261 267 127 55 chr1 123992318 123992483 -118671870 + L1ME4a LINE L1 5928 6104 -17 1429 174 48 20 chr1 123992642 123992935 -118671418 + AluJo SINE Alu 3 303 -9 2338 105 0 0 chr1 123993061 123993355 -118670998 + AluSq SINE Alu 2 295 -18 355 224 138 126 chr1 123994031 123994207 -118670146 + MIR SINE MIR 3 184 -78 2170 110 7 0 chr1 123994207 123994499 -118669854 + AluSq SINE Alu 1 294 -19 355 224 138 126 chr1 123994499 123994576 -118669777 + MIR SINE MIR 184 259 -3 1057 157 0 0 chr1 123994594 123994747 -118669606 + AluSx SINE Alu 1 153 -159 574 112 79 0 chr1 123994866 123994955 -118669398 + AluSg/x SINE Alu 200 295 -17 289 167 0 0 chr1 123994955 123995009 -118669344 + L1MA7 LINE L1 6238 6291 0 189 0 0 0 chr1 123995122 123995143 -118669210 + (TC)n Simple_repeat Simple_repeat 2 22 0 2044 133 0 7 chr1 123995143 123995437 -118668916 - AluSx SINE Alu -20 292 1 931 229 127 27 chr1 123995527 123995819 -118668534 + Charlie7 DNA MER1_type 31 351 -2261 1380 225 122 36 chr1 123995821 123996088 -118668265 + Charlie7 DNA MER1_type 1479 1722 -890 2520 54 0 3 chr1 123996088 123996385 -118667968 + AluY SINE Alu 1 296 -15 1380 225 122 36 chr1 123996385 123996747 -118667606 + Charlie7 DNA MER1_type 1722 2051 -561 2484 151 10 10 chr1 123996747 123997137 -118667216 - MLT1B LTR MaLR 0 390 1 1380 225 122 36 chr1 123997137 123997433 -118666920 + Charlie7 DNA MER1_type 2051 2546 -66 452 271 161 0 chr1 123997552 123997707 -118666646 + MIR SINE MIR 82 261 -1 654 260 164 9 chr1 123997884 123998115 -118666238 - L2 LINE L2 -2 3311 3045 358 274 35 0 chr1 123998149 123998262 -118666091 - L2 LINE L2 -711 2603 2487 324 276 29 19 chr1 123999458 123999563 -118664790 - MIR SINE MIR -1 261 156 757 222 7 0 chr1 123999603 123999756 -118664597 + MIR SINE MIR 99 252 -10 189 262 38 113 chr1 123999747 123999887 -118664466 - MIR SINE MIR -64 144 32 * 2082 115 7 0 chr1 124000064 124000350 -118664003 + AluSx SINE Alu 1 288 -24 245 95 0 24 chr1 124000350 124000392 -118663961 + (TA)n Simple_repeat Simple_repeat 2 42 0 2613 177 17 0 chr1 124000539 124000958 -118663395 - MSTB LTR MaLR 0 426 1 884 124 47 16 chr1 124001037 124001166 -118663187 - FLAM_C SINE Alu 0 133 1 373 208 125 0 chr1 124001765 124001861 -118662492 + MER112 DNA MER1_type 67 174 -86 267 239 75 66 chr1 124001873 124002086 -118662267 + L1MCc LINE L1 23 237 -6186 837 127 134 0 chr1 124002468 124002602 -118661751 + AluSp SINE Alu 146 297 -16 229 226 9 47 chr1 124002607 124002713 -118661640 + L1MCc LINE L1 1654 1755 -5176 2073 122 10 13 chr1 124002713 124003016 -118661337 - AluSq SINE Alu -11 302 1 1107 177 126 44 chr1 124003017 124003424 -118660929 - L1ME LINE L1 -533 5631 5187 2073 219 74 54 chr1 124003429 124003522 -118660831 - L1ME LINE L1 -870 5276 5186 2085 149 0 13 chr1 124003522 124003838 -118660515 - AluJb SINE Alu 0 312 1 2073 219 74 54 chr1 124003838 124004500 -118659853 - L1ME LINE L1 -960 5186 4539 1849 139 27 20 chr1 124004500 124004794 -118659559 + AluSx SINE Alu 1 296 -16 2073 219 74 54 chr1 124004794 124004897 -118659456 - L1ME LINE L1 -1607 4539 2569 1056 129 0 7 chr1 124004916 124005071 -118659282 - AluSx SINE Alu -1 311 158 601 167 0 0 chr1 124005072 124005162 -118659191 + AluJb SINE Alu 26 115 -197 986 118 0 118 chr1 124005174 124005352 -118659001 - AluSx SINE Alu -155 157 1 1756 231 75 42 chr1 124005363 124005627 -118658726 - L1MEc LINE L1 -1745 4470 4216 1625 171 26 30 chr1 124005627 124005931 -118658422 - AluJb SINE Alu -9 303 1 1756 231 75 42 chr1 124005931 124006259 -118658094 - L1MEc LINE L1 -1999 4216 3900 22 0 0 0 chr1 124006259 124006281 -118658072 + AT_rich Low_complexity Low_complexity 1 22 0 1956 159 3 0 chr1 124006287 124006588 -118657765 - AluSx SINE Alu -8 304 3 1756 231 75 42 chr1 124006588 124006770 -118657583 - L1MEc LINE L1 -2319 3896 3641 546 196 0 0 chr1 124006770 124006872 -118657481 - FRAM SINE Alu -3 173 72 242 218 173 11 chr1 124006872 124007051 -118657302 - L1MEc LINE L1 -2890 3325 3118 2354 109 0 0 chr1 124007257 124007569 -118656784 - AluSx SINE Alu 0 312 1 888 168 11 6 chr1 124007643 124007822 -118656531 - L1MEc LINE L1 -3284 2931 2752 1221 110 0 0 chr1 124007825 124007988 -118656365 + AluSg/x SINE Alu 143 305 -5 1536 228 72 84 chr1 124007988 124008807 -118655546 - L1MEc LINE L1 -3458 2757 1930 324 48 0 0 chr1 124008807 124008849 -118655504 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 1996 138 17 0 chr1 124008849 124009145 -118655208 - AluSg SINE Alu -4 306 6 1536 228 72 84 chr1 124009145 124009439 -118654914 - L1MEc LINE L1 -4283 1932 1704 1087 205 65 0 chr1 124009441 124009719 -118654634 + MER45B DNA AcHobo 745 1040 0 2401 258 82 61 chr1 124009722 124010515 -118653838 - L1MEc LINE L1 -4699 1697 922 2406 70 3 0 chr1 124010515 124010813 -118653540 - AluY SINE Alu -12 299 1 2401 258 82 61 chr1 124010813 124010906 -118653447 - L1MEc LINE L1 -5474 922 832 1783 150 29 0 chr1 124010906 124011219 -118653134 - AluSx SINE Alu 0 323 3 2401 258 82 61 chr1 124011219 124011960 -118652393 - L1MEc LINE L1 -5564 832 35 240 35 0 0 chr1 124011979 124012008 -118652345 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2007 90 30 11 chr1 124012014 124012282 -118652071 - AluSc SINE Alu -36 273 1 2311 104 0 3 chr1 124012736 124013033 -118651320 + AluSq SINE Alu 1 296 -17 1654 183 41 10 chr1 124013978 124014148 -118650205 - AluJo SINE Alu -13 299 115 216 0 0 0 chr1 124014148 124014172 -118650181 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1654 183 41 10 chr1 124014172 124014291 -118650062 - AluJo SINE Alu -197 115 1 180 0 0 0 chr1 124014712 124014732 -118649621 + (T)n Simple_repeat Simple_repeat 1 20 0 1929 142 7 10 chr1 124015505 124015807 -118648546 + AluSx SINE Alu 3 303 -9 2271 114 3 0 chr1 124017395 124017703 -118646650 + AluSx SINE Alu 2 310 -2 1347 166 73 66 chr1 124017715 124018016 -118646337 + AluJo SINE Alu 1 303 -9 1563 160 21 21 chr1 124018301 124018582 -118645771 + AluSx SINE Alu 23 303 -9 31 0 0 0 chr1 124018591 124018622 -118645731 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 124019192 124019214 -118645139 + AT_rich Low_complexity Low_complexity 1 22 0 238 236 9 127 chr1 124019552 124019662 -118644691 + MER102a DNA MER1_type 221 317 -13 1986 146 0 7 chr1 124019899 124020194 -118644159 + AluJo SINE Alu 1 293 -19 780 163 7 34 chr1 124021026 124021173 -118643180 - FLAM_C SINE Alu 0 143 1 2521 64 0 0 chr1 124024027 124024324 -118640029 + AluY SINE Alu 1 297 -14 2262 96 7 0 chr1 124024708 124025001 -118639352 + AluSg SINE Alu 1 295 -15 2609 74 6 33 chr1 124025129 124025450 -118638903 + THE1A LTR MaLR 2 313 -42 2135 123 3 3 chr1 124025450 124025742 -118638611 - AluSq SINE Alu -21 292 1 2609 74 6 33 chr1 124025742 124025784 -118638569 + THE1A LTR MaLR 313 355 0 2101 143 0 7 chr1 124025900 124026207 -118638146 - AluSx SINE Alu -7 305 1 2529 68 7 0 chr1 124026212 124026521 -118637832 - AluY SINE Alu 0 311 1 226 328 185 11 chr1 124026529 124026718 -118637635 - L3b LINE CR1 -143 1440 1219 318 247 75 0 chr1 124026785 124026878 -118637475 - MIR SINE MIR -55 207 108 279 263 81 10 chr1 124027072 124027171 -118637182 - MIR SINE MIR -33 229 124 2270 88 0 14 chr1 124027288 124027582 -118636771 - AluSc SINE Alu -17 292 3 1933 164 7 3 chr1 124028066 124028364 -118635989 - AluJb SINE Alu -13 299 1 526 261 98 85 chr1 124029009 124029354 -118634999 - L1MC4a LINE L1 -748 5398 5569 2039 118 0 42 chr1 124029354 124029497 -118634856 + AluJb SINE Alu 1 148 -164 2373 101 0 0 chr1 124029497 124029794 -118634559 + AluSg SINE Alu 1 297 -13 2039 118 0 42 chr1 124029794 124029963 -118634390 + AluJb SINE Alu 148 300 -12 526 261 98 85 chr1 124029963 124030367 -118633986 - L1MC4a LINE L1 -576 5570 5172 351 0 0 0 chr1 124030497 124030536 -118633817 + (TG)n Simple_repeat Simple_repeat 2 40 0 2421 80 0 3 chr1 124031597 124031896 -118632457 - AluSg SINE Alu -12 298 1 21 0 0 0 chr1 124032951 124032972 -118631381 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 124033800 124033823 -118630530 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 214 238 214 24 chr1 124033844 124033928 -118630425 + MIR SINE MIR 53 152 -110 891 213 113 21 chr1 124033933 124034020 -118630333 + MIR SINE MIR 1 79 -183 1956 113 58 31 chr1 124034020 124034313 -118630040 - AluSx SINE Alu -4 308 8 891 213 113 21 chr1 124034313 124034464 -118629889 + MIR SINE MIR 79 261 -1 313 247 37 0 chr1 124034466 124034547 -118629806 + MIR SINE MIR 177 260 -2 241 330 85 9 chr1 124034610 124034716 -118629637 - L2 LINE L2 -1 3271 3158 502 208 57 99 chr1 124034737 124034929 -118629424 + Charlie8 DNA MER1_type 38 221 -2196 1661 253 78 12 chr1 124034937 124035742 -118628611 + MER45C DNA AcHobo 8 944 -9 582 239 0 8 chr1 124036103 124036237 -118628116 + FLAM_A SINE Alu 1 133 0 1891 121 7 7 chr1 124036504 124036785 -118627568 - AluJb SINE Alu -11 301 21 445 265 18 18 chr1 124038294 124038460 -118625893 - L1ME4a LINE L1 -18 6103 5938 1787 120 51 11 chr1 124038478 124038772 -118625581 + AluJo SINE Alu 1 305 0 240 111 0 0 chr1 124038772 124038808 -118625545 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 2180 77 46 0 chr1 124038887 124039172 -118625181 + AluSx SINE Alu 1 298 -14 305 241 168 36 chr1 124039176 124039313 -118625040 - L1ME4a LINE L1 -2397 5411 5257 1793 181 7 3 chr1 124039451 124039749 -118624604 + AluJo SINE Alu 1 299 -13 1958 45 0 4 chr1 124042184 124042428 -118621925 - L1PA5 LINE L1 0 6154 5912 29 78 0 0 chr1 124043116 124043180 -118621173 + AT_rich Low_complexity Low_complexity 1 64 0 2218 113 0 13 chr1 124043332 124043634 -118620719 + AluSx SINE Alu 1 298 -14 346 291 82 42 chr1 124043640 124043854 -118620499 - L1ME3A LINE L1 -14 6156 5924 2113 238 36 2 chr1 124043893 124044477 -118619876 - L1ME3A LINE L1 -221 5949 5346 2225 114 0 3 chr1 124044517 124044815 -118619538 - AluSx SINE Alu -15 297 1 2401 97 0 0 chr1 124044841 124045152 -118619201 - AluSq SINE Alu -1 312 2 596 290 43 19 chr1 124045191 124045515 -118618838 - L1ME3A LINE L1 -932 5214 4883 29 0 0 0 chr1 124045535 124045564 -118618789 + AT_rich Low_complexity Low_complexity 1 29 0 1033 206 101 40 chr1 124045565 124045920 -118618433 - L1MC5 LINE L1 -30 7931 7541 1731 141 44 0 chr1 124045920 124046224 -118618129 - AluJb SINE Alu 0 316 1 1033 206 101 40 chr1 124046224 124046314 -118618039 - L1MC5 LINE L1 -420 7541 7458 226 315 75 75 chr1 124046773 124046811 -118617542 - L2 LINE L2 -1 3271 3234 2610 39 0 10 chr1 124046811 124047116 -118617237 - AluY SINE Alu -9 302 1 226 315 75 75 chr1 124047116 124047223 -118617130 - L2 LINE L2 -37 3235 3126 23 33 0 0 chr1 124047535 124047565 -118616788 + AT_rich Low_complexity Low_complexity 1 30 0 1005 282 165 14 chr1 124047974 124048343 -118616010 + L2 LINE L2 2886 3310 -3 412 233 125 17 chr1 124048346 124048466 -118615887 - MIR SINE MIR -6 256 124 1788 158 74 0 chr1 124048527 124048812 -118615541 - AluJo SINE Alu -6 306 1 773 251 116 82 chr1 124048812 124049166 -118615187 - L2 LINE L2 -923 2391 2026 908 153 0 21 chr1 124049182 124049326 -118615027 + FLAM_C SINE Alu 1 141 -2 649 307 54 0 chr1 124049333 124049538 -118614815 - L2 LINE L2 -1278 2036 1821 1895 162 0 7 chr1 124049571 124049879 -118614474 - AluJo SINE Alu -6 306 1 964 266 74 66 chr1 124049880 124050130 -118614223 + L1ME LINE L1 4643 4889 -1273 2182 107 0 0 chr1 124050130 124050454 -118613899 + AluSx SINE Alu 1 324 0 964 266 74 66 chr1 124050454 124051049 -118613304 + L1ME LINE L1 4889 5478 -684 1843 168 3 7 chr1 124051049 124051341 -118613012 + AluJo SINE Alu 3 293 -19 964 266 74 66 chr1 124051341 124051517 -118612836 + L1ME LINE L1 5478 5687 -475 2521 50 0 3 chr1 124051517 124051818 -118612535 - AluY SINE Alu -11 300 1 964 266 74 66 chr1 124051818 124051897 -118612456 + L1ME LINE L1 5687 5764 -398 1507 203 14 24 chr1 124051914 124052209 -118612144 - AluJb SINE Alu -20 292 1 634 134 119 52 chr1 124052657 124052791 -118611562 + FLAM_C SINE Alu 1 143 0 367 329 55 7 chr1 124052902 124053048 -118611305 - MIR3 SINE MIR -29 179 27 352 296 35 17 chr1 124053201 124053316 -118611037 + MIR SINE MIR 41 157 -105 766 150 0 17 chr1 124053420 124053540 -118610813 + FLAM_C SINE Alu 1 118 -25 1416 164 47 66 chr1 124054968 124055113 -118609240 + AluJo SINE Alu 1 147 -207 2228 122 0 13 chr1 124055113 124055416 -118608937 + AluSq SINE Alu 1 299 -14 1416 164 47 66 chr1 124055416 124055630 -118608723 + AluJo SINE Alu 147 354 0 259 275 150 25 chr1 124056240 124056326 -118608027 + MIR3 SINE MIR 65 165 -43 293 254 369 0 chr1 124056326 124056456 -118607897 - MER5B DNA MER1_type 0 178 1 766 160 42 8 chr1 124057414 124057533 -118606820 + FLAM_C SINE Alu 2 124 -19 21 36 0 0 chr1 124057534 124057562 -118606791 + AT_rich Low_complexity Low_complexity 1 28 0 420 282 53 53 chr1 124057620 124057739 -118606614 - MIR SINE MIR -13 249 128 2220 112 3 16 chr1 124057739 124058053 -118606300 + AluSx SINE Alu 1 310 -2 420 282 53 53 chr1 124058053 124058103 -118606250 - MIR SINE MIR -133 129 80 222 37 0 0 chr1 124058452 124058479 -118605874 + (TG)n Simple_repeat Simple_repeat 2 28 0 2445 73 3 3 chr1 124058489 124058790 -118605563 - AluSq SINE Alu -12 301 1 279 0 0 0 chr1 124058790 124058821 -118605532 + (TG)n Simple_repeat Simple_repeat 2 32 0 1523 159 87 7 chr1 124059992 124060268 -118604085 + AluJo SINE Alu 5 302 -10 1771 146 51 24 chr1 124062091 124062386 -118601967 + AluJo SINE Alu 1 303 -9 2131 127 3 0 chr1 124062430 124062730 -118601623 - AluSx SINE Alu -11 301 1 2079 115 21 0 chr1 124063034 124063320 -118601033 - AluSx SINE Alu -19 293 2 316 283 0 40 chr1 124063364 124063463 -118600890 - MIR SINE MIR -70 192 98 264 253 278 53 chr1 124063507 124063752 -118600601 - L2 LINE L2 0 3313 3014 2381 94 3 0 chr1 124064097 124064404 -118599949 - AluSc SINE Alu -1 308 1 1455 195 143 0 chr1 124064669 124064682 -118599671 - MSTC LTR MaLR -53 375 365 1890 93 24 0 chr1 124064682 124064954 -118599399 + AluSq SINE Alu 35 312 0 1455 195 143 0 chr1 124064954 124065267 -118599086 - MSTC LTR MaLR -63 365 1 1627 159 28 17 chr1 124065727 124065850 -118598503 + AluJb SINE Alu 1 121 -191 248 0 0 30 chr1 124065850 124065883 -118598470 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1627 159 28 17 chr1 124065883 124066048 -118598305 + AluJb SINE Alu 121 292 -20 234 0 0 0 chr1 124066066 124066092 -118598261 + (GA)n Simple_repeat Simple_repeat 2 27 0 257 242 67 40 chr1 124066230 124066379 -118597974 - L1ME LINE L1 -224 5897 5745 207 274 0 0 chr1 124066736 124066787 -118597566 + T-rich Low_complexity Low_complexity 1 51 0 2145 129 0 22 chr1 124066824 124067142 -118597211 + AluSx SINE Alu 2 312 0 2064 123 7 13 chr1 124067146 124067448 -118596905 + AluSx SINE Alu 1 300 -12 490 174 43 0 chr1 124067693 124067785 -118596568 + MER82 DNA MER2_type 1 96 -557 203 415 11 0 chr1 124067867 124067961 -118596392 - MIR SINE MIR -116 146 52 878 244 12 0 chr1 124067973 124068145 -118596208 + MER82 DNA MER2_type 435 608 -45 948 170 18 24 chr1 124068789 124068954 -118595399 + AluJb SINE Alu 2 165 -147 1899 116 31 56 chr1 124069166 124069486 -118594867 - AluSx SINE Alu 0 312 1 1551 161 30 22 chr1 124070671 124070938 -118593415 + AluJb SINE Alu 12 280 -32 2050 118 10 20 chr1 124070957 124071254 -118593099 + AluSx SINE Alu 1 294 -18 288 77 0 0 chr1 124071288 124071327 -118593026 + AluJ/FLAM SINE Alu 25 63 -239 676 170 0 0 chr1 124071327 124071427 -118592926 + AluJb SINE Alu 167 266 -46 216 67 0 0 chr1 124072019 124072049 -118592304 + (TG)n Simple_repeat Simple_repeat 1 30 0 1076 161 33 0 chr1 124072639 124072819 -118591534 + AluJb SINE Alu 120 305 -7 611 89 27 71 chr1 124073188 124073254 -118591099 - L1MD1 LINE L1 0 6242 6181 1814 167 13 10 chr1 124073254 124073565 -118590788 + AluJo SINE Alu 1 312 0 611 89 27 71 chr1 124073565 124073610 -118590743 - L1MD1 LINE L1 -61 6181 6136 2243 97 3 3 chr1 124073651 124073949 -118590404 + AluSq SINE Alu 1 298 -15 219 69 0 0 chr1 124074627 124074656 -118589697 + (CAT)n Simple_repeat Simple_repeat 2 30 0 379 207 60 183 chr1 124074674 124074925 -118589428 - MIR SINE MIR -24 238 19 914 188 0 0 chr1 124075011 124075160 -118589193 + FRAM SINE Alu 1 149 -27 2313 85 0 0 chr1 124075212 124075494 -118588859 + AluSc SINE Alu 10 291 -18 27 73 0 0 chr1 124075523 124075578 -118588775 + AT_rich Low_complexity Low_complexity 1 55 0 2017 130 30 0 chr1 124075680 124075980 -118588373 - AluSp SINE Alu -3 310 2 2572 243 144 35 chr1 124076073 124076397 -118587956 + HAL1 LINE L1 634 921 -1586 1854 171 3 3 chr1 124076397 124076689 -118587664 + AluJo SINE Alu 1 292 -20 2572 243 144 35 chr1 124076689 124077486 -118586867 + HAL1 LINE L1 921 1878 -629 1096 145 0 0 chr1 124077609 124077768 -118586585 - L1PB1 LINE L1 -15 6136 5978 963 156 60 0 chr1 124078159 124078326 -118586027 + MLT1D LTR MaLR 1 177 -328 7577 36 6 1 chr1 124078424 124079810 -118584543 - L1PA5 LINE L1 -7 6147 4747 2465 59 56 0 chr1 124079810 124080131 -118584222 + L1P LINE L1 555 893 -5253 1029 199 182 17 chr1 124080131 124080422 -118583931 + MLT1D LTR MaLR 167 505 0 229 227 133 0 chr1 124080518 124080593 -118583760 - L1ME4a LINE L1 -23 6098 6014 434 216 0 29 chr1 124080838 124080940 -118583413 - MLT1K LTR MaLR -18 570 472 760 159 139 26 chr1 124080949 124081100 -118583253 + AluJo SINE Alu 123 290 -22 27 29 0 0 chr1 124081100 124081134 -118583219 + AT_rich Low_complexity Low_complexity 1 34 0 297 324 43 36 chr1 124081157 124081296 -118583057 - MLT1K LTR MaLR -166 422 283 807 180 0 0 chr1 124081586 124081708 -118582645 + FLAM_C SINE Alu 2 123 -20 858 145 8 15 chr1 124081984 124082139 -118582214 + FLAM_C SINE Alu 2 155 0 1977 148 10 0 chr1 124082151 124082442 -118581911 - AluSx SINE Alu -18 294 1 628 250 68 31 chr1 124082587 124082779 -118581574 + MLT1J LTR MaLR 1 199 -312 1897 166 0 0 chr1 124082817 124083113 -118581240 - AluJb SINE Alu -16 296 1 1066 159 0 0 chr1 124084626 124084783 -118579570 + FRAM SINE Alu 1 156 -20 23 0 0 0 chr1 124084783 124084806 -118579547 + AT_rich Low_complexity Low_complexity 1 23 0 2162 98 7 0 chr1 124084884 124085160 -118579193 + AluSq SINE Alu 4 281 -32 1330 234 79 38 chr1 124085987 124086405 -118577948 - LTR16A LTR ERVL 0 450 16 1137 161 0 0 chr1 124086941 124087103 -118577250 + FRAM SINE Alu 2 163 -3 210 346 161 0 chr1 124087115 124087196 -118577157 + L2 LINE L2 3160 3253 -19 * 310 256 58 0 chr1 124087190 124087276 -118577077 - MIR3 SINE MIR -5 203 113 273 311 141 24 chr1 124087356 124087562 -118576791 + L2 LINE L2 2037 2266 -1048 431 341 79 47 chr1 124087578 124087908 -118576445 + L2 LINE L2 2414 2759 -555 2166 125 3 0 chr1 124087908 124088212 -118576141 - AluSq SINE Alu -8 305 1 431 341 79 47 chr1 124088212 124088262 -118576091 + L2 LINE L2 2759 2806 -508 818 164 8 23 chr1 124088281 124088409 -118575944 + FLAM_C SINE Alu 1 126 -7 754 258 56 5 chr1 124088448 124088646 -118575707 + MIR SINE MIR 34 241 -21 1689 160 14 7 chr1 124088758 124089045 -118575308 + AluJo SINE Alu 18 306 -6 1701 175 55 0 chr1 124089279 124089570 -118574783 + AluJb SINE Alu 1 307 -5 1201 216 102 88 chr1 124089639 124090029 -118574324 + MLT1E LTR MaLR 1 505 -149 791 165 0 16 chr1 124090032 124090048 -118574305 - AluJo/FRAM SINE Alu -1 311 296 2097 104 9 38 chr1 124090048 124090232 -118574121 - AluSx SINE Alu 0 312 139 2381 104 0 0 chr1 124090232 124090541 -118573812 - AluSx SINE Alu -3 309 1 2097 104 9 38 chr1 124090541 124090674 -118573679 - AluSx SINE Alu -173 139 4 791 165 0 16 chr1 124090674 124090784 -118573569 - AluJo/FRAM SINE Alu -16 296 187 910 163 31 6 chr1 124090785 124090945 -118573408 + MLT1F LTR MaLR 377 540 -2 1433 154 22 22 chr1 124091108 124091375 -118572978 + L1MB3 LINE L1 5915 6181 -2 21 71 0 0 chr1 124091411 124091453 -118572900 + AT_rich Low_complexity Low_complexity 1 42 0 1872 141 10 7 chr1 124091944 124092243 -118572110 - AluJb SINE Alu -12 300 1 1143 111 0 78 chr1 124092639 124092819 -118571534 + AluSg/x SINE Alu 133 298 -14 243 276 9 69 chr1 124093183 124093299 -118571054 + L1MC4 LINE L1 7802 7910 -132 410 249 18 3 chr1 124093340 124093468 -118570885 + L1MC4 LINE L1 7908 7994 -1 21 0 0 0 chr1 124093587 124093608 -118570745 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr1 124093608 124093635 -118570718 + (TA)n Simple_repeat Simple_repeat 2 28 0 1742 149 0 0 chr1 124093640 124093889 -118570464 + AluSx SINE Alu 1 249 -63 473 136 123 0 chr1 124093922 124094003 -118570350 + AluSg/x SINE Alu 211 301 -9 1020 261 20 74 chr1 124094012 124094364 -118569989 + HAL1 LINE L1 2 334 -2173 1180 127 75 0 chr1 124094373 124094546 -118569807 + AluSx SINE Alu 1 186 -126 306 75 0 0 chr1 124094546 124094586 -118569767 - AluSp/q SINE Alu -53 250 211 346 264 58 90 chr1 124094712 124094867 -118569486 + HAL1 LINE L1 185 334 -2173 1657 117 48 76 chr1 124094876 124095214 -118569139 + AluSx SINE Alu 1 330 0 21 0 0 0 chr1 124095224 124095245 -118569108 + AT_rich Low_complexity Low_complexity 1 21 0 1071 272 111 17 chr1 124095386 124095746 -118568607 + HAL1 LINE L1 435 828 -1679 745 151 92 0 chr1 124095772 124095891 -118568462 + FLAM_C SINE Alu 1 130 -3 819 233 27 19 chr1 124096019 124096240 -118568113 - MER77 LTR ERV1 -6 599 380 192 40 0 0 chr1 124096346 124096371 -118567982 + (TA)n Simple_repeat Simple_repeat 1 25 0 518 254 130 40 chr1 124096442 124096619 -118567734 - MER77 LTR ERV1 -221 384 192 382 264 79 14 chr1 124096731 124096871 -118567482 - MER77 LTR ERV1 -396 209 61 549 242 48 87 chr1 124096904 124097156 -118567197 + L1MC4 LINE L1 7794 8035 -7 4980 158 18 11 chr1 124097483 124098310 -118566043 + L1MC1 LINE L1 5493 6325 -8 870 181 0 0 chr1 124098324 124098457 -118565896 + FLAM_C SINE Alu 1 133 0 306 106 0 0 chr1 124098457 124098504 -118565849 + (GA)n Simple_repeat Simple_repeat 2 48 0 2378 106 0 6 chr1 124098529 124098840 -118565513 + AluSx SINE Alu 1 309 -3 1337 157 23 96 chr1 124099023 124099272 -118565081 + MER33 DNA MER1_type 6 225 -2360 2136 118 3 7 chr1 124099272 124099569 -118564784 - AluSx SINE Alu -15 297 2 1337 157 23 96 chr1 124099569 124099663 -118564690 + MER33 DNA MER1_type 225 324 0 567 132 0 0 chr1 124100213 124100289 -118564064 + AluSg/x SINE Alu 218 293 -19 318 26 0 0 chr1 124100291 124100330 -118564023 + (TA)n Simple_repeat Simple_repeat 1 39 0 30 0 0 0 chr1 124100427 124100457 -118563896 + AT_rich Low_complexity Low_complexity 1 30 0 1993 145 7 0 chr1 124100582 124100878 -118563475 - AluSx SINE Alu -14 298 1 1324 99 0 108 chr1 124100969 124101192 -118563161 - AluSx SINE Alu -113 199 1 455 290 68 74 chr1 124101193 124101370 -118562983 + HAL1b LINE L1 376 553 -795 2054 103 3 14 chr1 124101370 124101693 -118562660 - AluSg SINE Alu 0 310 1 455 290 68 74 chr1 124101693 124101987 -118562366 + HAL1b LINE L1 553 844 -504 620 260 58 87 chr1 124102317 124102729 -118561624 - L1ME3A LINE L1 0 6170 5771 248 0 0 0 chr1 124102729 124102756 -118561597 + U3 snRNA snRNA 1 27 -190 1979 134 0 0 chr1 124102756 124103077 -118561276 - AluSx SINE Alu 0 326 6 317 75 0 0 chr1 124103077 124103117 -118561236 - Alu SINE Alu -262 40 1 444 293 38 9 chr1 124103120 124103332 -118561021 - L1ME3A LINE L1 -951 5195 4978 524 311 181 34 chr1 124103334 124103749 -118560604 + HAL1 LINE L1 288 763 -1744 1305 246 119 24 chr1 124103750 124104187 -118560166 - MLT1F LTR MaLR -19 523 57 304 229 22 9 chr1 124104223 124104312 -118560041 - MER68 LTR ERV1 -7 555 498 2508 68 0 3 chr1 124105053 124105363 -118558990 - AluY SINE Alu -2 309 1 1471 205 138 27 chr1 124106914 124107284 -118557069 - MER77 LTR ERV1 -154 451 41 305 219 31 0 chr1 124107295 124107359 -118556994 - MLT1F LTR MaLR -476 66 1 1024 165 37 0 chr1 124107432 124107596 -118556757 - FRAM SINE Alu -7 169 1 350 238 97 101 chr1 124107596 124107894 -118556459 + HAL1 LINE L1 810 1106 -1401 2245 109 0 0 chr1 124108071 124108365 -118555988 - AluY SINE Alu -17 294 1 383 135 0 0 chr1 124108381 124108433 -118555920 - AluJo SINE Alu -11 290 239 1127 142 15 46 chr1 124108436 124108633 -118555720 - AluJo SINE Alu -116 196 6 567 223 0 9 chr1 124108648 124108760 -118555593 - MER69A DNA AcHobo -65 112 2 471 271 18 68 chr1 124108762 124108925 -118555428 + HAL1 LINE L1 2274 2425 -82 2520 83 0 10 chr1 124108925 124109239 -118555114 - AluY SINE Alu 0 311 1 471 271 18 68 chr1 124109239 124109296 -118555057 + HAL1 LINE L1 2425 2483 -24 772 181 0 36 chr1 124109400 124109538 -118554815 - AluJo SINE Alu -177 135 3 1586 122 0 4 chr1 124109837 124110066 -118554287 - AluSg/x SINE Alu -12 298 71 2107 96 0 7 chr1 124110498 124110780 -118553573 + AluSx SINE Alu 1 280 -32 3330 167 13 33 chr1 124110934 124111532 -118552821 + L1M2a LINE L1 1 586 -6582 854 257 47 8 chr1 124111531 124111788 -118552565 - L1MC4 LINE L1 -683 7359 7093 * 465 285 39 48 chr1 124111810 124112017 -118552336 - LTR16C LTR ERVL -2 489 285 845 204 102 33 chr1 124112277 124112522 -118551831 - L1MC4 LINE L1 -970 7072 6811 2068 139 0 0 chr1 124112776 124113070 -118551283 - AluSx SINE Alu -18 294 1 2040 111 0 28 chr1 124113205 124113526 -118550827 - AluSg SINE Alu 0 313 1 851 266 135 36 chr1 124113723 124114198 -118550155 - L1MC4a LINE L1 -1061 6747 6218 2198 115 3 0 chr1 124114198 124114494 -118549859 - AluSx SINE Alu -15 297 1 851 266 135 36 chr1 124114494 124114521 -118549832 - L1MC4a LINE L1 -1590 6218 6195 791 238 176 37 chr1 124114536 124114860 -118549493 + L1MC4a LINE L1 5783 6151 -1657 2300 94 3 22 chr1 124114860 124115178 -118549175 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 124115185 124115209 -118549144 + AT_rich Low_complexity Low_complexity 1 24 0 1848 183 0 0 chr1 124115213 124115508 -118548845 + AluJo SINE Alu 1 295 -17 290 216 225 24 chr1 124115518 124115731 -118548622 + L1ME4a LINE L1 5814 6069 -52 1829 146 0 36 chr1 124115799 124115972 -118548381 - AluSx SINE Alu -14 298 139 2312 109 0 0 chr1 124115972 124116275 -118548078 - AluSx SINE Alu -9 303 1 1829 146 0 36 chr1 124116275 124116410 -118547943 - AluSx SINE Alu -173 139 1 2098 174 72 52 chr1 124116456 124116940 -118547413 + MLT1D LTR MaLR 10 503 -2 2040 153 3 0 chr1 124117030 124117337 -118547016 + AluJb SINE Alu 1 308 -4 531 233 25 0 chr1 124117588 124117708 -118546645 + MLT1J2 LTR MaLR 21 143 -307 331 244 0 33 chr1 124117832 124117922 -118546431 + MLT1J2 LTR MaLR 345 431 -19 21 36 0 0 chr1 124117960 124117988 -118546365 + AT_rich Low_complexity Low_complexity 1 28 0 313 282 73 40 chr1 124118065 124118189 -118546164 - MLT1J LTR MaLR -58 453 326 348 229 2 25 chr1 124118245 124118336 -118546017 - MLT1J LTR MaLR -292 180 73 326 260 26 0 chr1 124118765 124118842 -118545511 - MER94 DNA DNA -54 80 2 896 132 8 8 chr1 124118903 124119032 -118545321 + FLAM_C SINE Alu 1 129 -4 2334 107 0 0 chr1 124119302 124119601 -118544752 + AluSx SINE Alu 1 299 -13 1011 111 0 7 chr1 124119822 124119957 -118544396 - AluSq/x SINE Alu -179 134 1 270 337 64 21 chr1 124120007 124120289 -118544064 - L1MC/D LINE L1 -2252 5556 5263 1589 161 0 71 chr1 124120730 124121052 -118543301 + AluJo SINE Alu 1 299 -13 568 248 56 60 chr1 124121087 124121353 -118543000 - MER39 LTR ERV1 -173 534 68 2476 210 42 27 chr1 124121404 124121913 -118542440 - L1MC4 LINE L1 -947 7048 6548 2346 99 0 0 chr1 124121913 124122215 -118542138 - AluSx SINE Alu -10 302 1 2476 210 42 27 chr1 124122215 124122263 -118542090 - L1MC4 LINE L1 -1447 6548 6502 2347 102 0 3 chr1 124122263 124122576 -118541777 - AluSq SINE Alu -1 312 1 2476 210 42 27 chr1 124122576 124122625 -118541728 - L1MC4 LINE L1 -1493 6502 6444 1901 159 0 7 chr1 124123115 124123410 -118540943 + AluJo SINE Alu 1 293 -19 188 255 59 0 chr1 124123412 124123463 -118540890 - L2 LINE L2 0 3272 3219 863 221 62 42 chr1 124123586 124123826 -118540527 - MIR SINE MIR -16 246 2 1382 314 78 54 chr1 124123895 124124470 -118539883 - L2 LINE L2 -217 3055 2495 2050 106 53 0 chr1 124124470 124124752 -118539601 - AluSx SINE Alu -15 297 1 1382 314 78 54 chr1 124124752 124125109 -118539244 - L2 LINE L2 -777 2495 2148 2067 207 159 53 chr1 124125109 124125429 -118538924 + MER77 LTR ERV1 5 290 -315 2316 80 3 17 chr1 124125429 124125731 -118538622 - AluY SINE Alu -13 298 1 2067 207 159 53 chr1 124125731 124125952 -118538401 + MER77 LTR ERV1 290 603 -2 1382 314 78 54 chr1 124125952 124126110 -118538243 - L2 LINE L2 -1124 2148 1995 2053 120 0 3 chr1 124126110 124126402 -118537951 + AluSx SINE Alu 1 291 -21 1382 314 78 54 chr1 124126402 124126531 -118537822 - L2 LINE L2 -1277 1995 1805 1689 185 7 16 chr1 124126531 124126839 -118537514 - AluJo SINE Alu -7 305 1 183 80 0 0 chr1 124126860 124126885 -118537468 + (A)n Simple_repeat Simple_repeat 1 25 0 536 255 102 0 chr1 124126967 124127163 -118537190 + L1ME LINE L1 5584 5799 -322 732 163 24 8 chr1 124127479 124127602 -118536751 - FLAM_C SINE Alu -6 127 3 495 273 125 23 chr1 124128249 124128465 -118535888 - MIR SINE MIR -24 238 1 410 266 120 10 chr1 124128852 124129044 -118535309 + L2 LINE L2 2552 2764 -550 325 186 10 118 chr1 124129044 124129146 -118535207 + Charlie2 DNA MER1_type 1 91 -2691 439 195 134 37 chr1 124129220 124129384 -118534969 + Charlie2 DNA MER1_type 2133 2312 -550 472 216 174 24 chr1 124129388 124129601 -118534752 + Charlie2 DNA MER1_type 2617 2861 -1 768 231 286 18 chr1 124129605 124130003 -118534350 + L2 LINE L2 2805 3309 -4 1299 185 63 35 chr1 124130021 124130308 -118534045 + AluJb SINE Alu 1 295 -7 2321 72 0 26 chr1 124130467 124130772 -118533581 - AluSx SINE Alu -15 297 1 276 323 73 12 chr1 124130872 124131036 -118533317 - MER5B DNA MER1_type -2 176 3 235 64 21 21 chr1 124131115 124131162 -118533191 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 187 125 0 36 chr1 124131655 124131711 -118532642 + (CGG)n Simple_repeat Simple_repeat 3 56 0 25 0 0 0 chr1 124131812 124131837 -118532516 + GC_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr1 124131910 124131953 -118532400 + GC_rich Low_complexity Low_complexity 1 43 0 628 226 199 35 chr1 124133279 124133566 -118530787 - MER46C DNA MER2_type -4 334 1 370 281 59 26 chr1 124133622 124133775 -118530578 - L2 LINE L2 -559 2755 2598 519 255 75 6 chr1 124133852 124134013 -118530340 + MIR SINE MIR 50 221 -41 2015 142 7 0 chr1 124134696 124134985 -118529368 - AluSx SINE Alu -21 291 1 190 254 202 44 chr1 124135072 124135186 -118529167 + MIR3 SINE MIR 12 143 -65 937 165 152 0 chr1 124135454 124135618 -118528735 + MER5A DNA MER1_type 1 189 0 448 291 67 6 chr1 124135807 124135972 -118528381 - MER5A DNA MER1_type -12 177 3 675 132 0 0 chr1 124136185 124136276 -118528077 + FLAM_A SINE Alu 33 123 -19 197 321 62 54 chr1 124136371 124136417 -118527936 + MIR3 SINE MIR 9 53 -155 2155 116 7 3 chr1 124136417 124136718 -118527635 - AluSq SINE Alu -11 302 1 197 321 62 54 chr1 124136718 124136783 -118527570 + MIR3 SINE MIR 53 121 -87 2151 106 0 0 chr1 124136952 124137259 -118527094 + AluSx SINE Alu 1 307 0 574 255 142 39 chr1 124137637 124137841 -118526512 + MIR SINE MIR 38 262 0 4383 201 62 77 chr1 124138163 124138389 -118525964 + Charlie1a DNA MER1_type 1 229 -2532 1534 187 0 11 chr1 124138389 124138667 -118525686 + AluJb SINE Alu 38 312 0 4383 201 62 77 chr1 124138667 124139317 -118525036 + Charlie1a DNA MER1_type 229 887 -1874 2165 128 10 0 chr1 124139317 124139621 -118524732 - AluSx SINE Alu -5 307 1 4383 201 62 77 chr1 124139621 124140014 -118524339 + Charlie1a DNA MER1_type 887 1248 -1513 1816 168 14 0 chr1 124140014 124140306 -118524047 + AluJb SINE Alu 2 297 -15 4383 201 62 77 chr1 124140306 124140510 -118523843 + Charlie1a DNA MER1_type 1248 1454 -1 401 274 92 25 chr1 124140977 124141163 -118523190 - L1M LINE L1 -765 5381 5193 2332 223 33 33 chr1 124141163 124141604 -118522749 + MLT1F LTR MaLR 1 444 -98 2842 10 0 0 chr1 124141604 124141911 -118522442 - AluYa5 SINE Alu -4 307 1 2332 223 33 33 chr1 124141911 124142011 -118522342 + MLT1F LTR MaLR 443 542 0 401 274 92 25 chr1 124142011 124142032 -118522321 - L1M LINE L1 -953 5193 5175 26 0 0 0 chr1 124142198 124142224 -118522129 + AT_rich Low_complexity Low_complexity 1 26 0 1096 180 0 17 chr1 124142317 124142495 -118521858 + FAM SINE Alu 1 175 0 343 264 64 16 chr1 124142502 124142627 -118521726 - L1M4 LINE L1 -1524 4622 4492 2122 103 3 20 chr1 124142649 124142941 -118521412 - AluSq SINE Alu -26 287 1 679 268 70 75 chr1 124142962 124143432 -118520921 - L1MEd LINE L1 -5291 828 361 810 243 128 75 chr1 124143529 124144174 -118520179 - HAL1 LINE L1 -750 1757 1065 1991 104 64 7 chr1 124144174 124144454 -118519899 - AluSx SINE Alu -16 296 1 810 243 128 75 chr1 124144454 124144565 -118519788 - HAL1 LINE L1 -1442 1065 961 1194 132 6 0 chr1 124144673 124144840 -118519513 - AluSg/x SINE Alu -10 300 133 342 256 53 58 chr1 124144874 124145081 -118519272 - HAL1 LINE L1 -1553 954 749 2962 196 110 29 chr1 124145083 124145219 -118519134 + Cheshire DNA MER1_type 1 125 -2295 2134 120 0 17 chr1 124145219 124145520 -118518833 + AluSq SINE Alu 1 296 -17 2962 196 110 29 chr1 124145520 124146112 -118518241 + Cheshire DNA MER1_type 125 788 -1632 642 161 129 21 chr1 124146101 124146294 -118518059 + Cheshire DNA MER1_type 2173 2386 -34 * 21 57 0 0 chr1 124146903 124146938 -118517415 + AT_rich Low_complexity Low_complexity 1 35 0 282 183 169 0 chr1 124147314 124147385 -118516968 + LTR54 LTR ERV1 361 443 -67 2004 117 0 4 chr1 124147608 124147881 -118516472 + AluSx SINE Alu 4 275 -37 195 42 0 0 chr1 124147885 124147909 -118516444 + (CAA)n Simple_repeat Simple_repeat 2 25 0 269 297 29 23 chr1 124148071 124148246 -118516107 - L1P5 LINE L1 -712 5439 5264 273 252 39 63 chr1 124148313 124148440 -118515913 - L1MC4a LINE L1 -1629 6179 6056 631 212 12 59 chr1 124148481 124148559 -118515794 + L1MB4 LINE L1 4841 4921 -1225 1427 173 30 34 chr1 124148559 124148697 -118515656 + AluJb SINE Alu 1 138 -174 2212 97 7 0 chr1 124148697 124148985 -118515368 + AluSc SINE Alu 1 290 -19 1427 173 30 34 chr1 124148985 124149141 -118515212 + AluJb SINE Alu 138 294 -18 631 212 12 59 chr1 124149141 124149232 -118515121 + L1MB4 LINE L1 4921 5002 -1144 801 163 23 0 chr1 124149235 124149364 -118514989 + FLAM_C SINE Alu 1 132 -11 4047 148 51 77 chr1 124149387 124150487 -118513866 + L1MB4 LINE L1 5107 6179 -1 2811 209 57 29 chr1 124150568 124150995 -118513358 - MER82 DNA MER2_type -1 652 200 1814 174 3 10 chr1 124150995 124151300 -118513053 - AluJb SINE Alu -9 303 1 2811 209 57 29 chr1 124151300 124151504 -118512849 - MER82 DNA MER2_type -453 200 3 248 178 0 0 chr1 124151591 124151636 -118512717 - L1MDa LINE L1 -3775 2765 2721 * 4181 192 41 82 chr1 124151626 124151988 -118512365 - L1MB8 LINE L1 -7 6171 5796 685 139 37 0 chr1 124151988 124152096 -118512257 - HY1 scRNA scRNA 0 112 1 4181 192 41 82 chr1 124152096 124152718 -118511635 - L1MB8 LINE L1 -382 5796 5150 973 128 0 0 chr1 124152718 124152851 -118511502 - FLAM_C SINE Alu 0 133 1 4181 192 41 82 chr1 124152851 124152944 -118511409 - L1MB8 LINE L1 -1028 5150 5055 378 131 71 40 chr1 124152944 124153043 -118511310 - L1MB4 LINE L1 0 6180 6079 1888 164 7 10 chr1 124153048 124153358 -118510995 - AluJo SINE Alu -3 309 1 4181 192 41 82 chr1 124153358 124153754 -118510599 - L1MB8 LINE L1 -1127 5051 4771 907 148 19 124 chr1 124153771 124153981 -118510372 - AluJo SINE Alu -31 281 94 1894 151 7 7 chr1 124154034 124154338 -118510015 - AluJo SINE Alu -8 304 1 2413 212 111 75 chr1 124154367 124154889 -118509464 - L1MDa LINE L1 -3890 2650 2148 2955 6 0 0 chr1 124154889 124155204 -118509149 - AluYb8 SINE Alu -3 315 1 2413 212 111 75 chr1 124155204 124155717 -118508636 - L1MDa LINE L1 -4392 2148 1561 2162 131 3 0 chr1 124155717 124156014 -118508339 - AluSx SINE Alu -14 298 1 2413 212 111 75 chr1 124156014 124156235 -118508118 - L1MDa LINE L1 -4979 1561 1349 454 83 0 60 chr1 124156238 124156322 -118508031 - AluSp SINE Alu 0 312 234 715 150 17 25 chr1 124156325 124156445 -118507908 - AluSp SINE Alu -160 153 35 874 234 69 63 chr1 124156445 124156540 -118507813 - L1MDa LINE L1 -5209 1334 1241 2052 132 0 3 chr1 124156540 124156827 -118507526 - AluSx SINE Alu -26 286 1 874 234 69 63 chr1 124156827 124157081 -118507272 - L1MDa LINE L1 -5302 1241 983 373 314 82 99 chr1 124157082 124157385 -118506968 - L1MDa LINE L1 -5547 993 499 278 209 20 0 chr1 124157434 124157504 -118506849 - L1MDa LINE L1 -5592 948 569 2234 87 0 55 chr1 124157753 124157928 -118506425 - AluSx SINE Alu -17 295 143 1969 158 0 6 chr1 124157928 124158239 -118506114 - AluSx SINE Alu -3 309 1 2234 87 0 55 chr1 124158239 124158375 -118505978 - AluSx SINE Alu -169 143 1 301 356 138 0 chr1 124158747 124158935 -118505418 + L2 LINE L2 2288 2501 -813 275 224 128 104 chr1 124158938 124159108 -118505245 - L1MEc LINE L1 -2443 4201 4037 2144 98 20 3 chr1 124159108 124159403 -118504950 + AluSx SINE Alu 1 300 -12 275 224 128 104 chr1 124159403 124159502 -118504851 - L1MEc LINE L1 -2607 4037 3942 1684 173 0 7 chr1 124159502 124159773 -118504580 - AluJb SINE Alu -19 293 25 275 224 128 104 chr1 124159773 124159853 -118504500 - L1MEc LINE L1 -2702 3942 3865 1962 134 150 11 chr1 124159853 124160227 -118504126 - MSTA LTR MaLR -2 426 1 275 224 128 104 chr1 124160227 124160586 -118503767 - L1MEc LINE L1 -2779 3865 3489 673 249 83 0 chr1 124160592 124160773 -118503580 - MER3 DNA MER1_type -6 203 8 1990 108 4 7 chr1 124160778 124161056 -118503297 + AluSx SINE Alu 21 297 -15 336 221 0 0 chr1 124161112 124161189 -118503164 + (TA)n Simple_repeat Simple_repeat 1 77 0 2069 129 3 0 chr1 124161320 124161607 -118502746 - AluSg SINE Alu -22 288 1 420 201 91 127 chr1 124161628 124161724 -118502629 - L1MEc LINE L1 -3687 2957 2859 1802 112 0 4 chr1 124161724 124161966 -118502387 - AluSx SINE Alu -8 304 64 420 201 91 127 chr1 124161966 124162286 -118502067 - L1MEc LINE L1 -3785 2859 2600 5579 54 17 10 chr1 124162423 124163126 -118501227 - SVA Other Other -1 1385 678 572 262 96 33 chr1 124163266 124163855 -118500498 - L1MEc LINE L1 -4646 2179 1349 2170 111 3 7 chr1 124163855 124164153 -118500200 - AluSq SINE Alu -16 297 1 572 262 96 33 chr1 124164153 124164351 -118500002 - L1MEc LINE L1 -5476 1349 1165 681 261 30 0 chr1 124165050 124165253 -118499100 - MER3 DNA MER1_type 0 209 1 539 250 186 0 chr1 124165285 124165505 -118498848 - MIR SINE MIR 0 262 2 493 279 74 13 chr1 124165672 124165970 -118498383 - L1MEc LINE L1 -2207 4437 4122 1077 191 15 0 chr1 124166915 124167114 -118497239 - AluJo SINE Alu -26 286 85 343 270 60 33 chr1 124167192 124167223 -118497130 - L1M4 LINE L1 -4831 1711 1682 2190 95 3 7 chr1 124167223 124167519 -118496834 - AluY SINE Alu -16 295 1 343 270 60 33 chr1 124167519 124167771 -118496582 - L1M4 LINE L1 -4860 1682 1475 676 226 38 94 chr1 124167822 124168012 -118496341 - L1MEc LINE L1 -3633 3011 2812 2196 102 0 30 chr1 124168012 124168317 -118496036 - AluSp SINE Alu -17 296 1 1805 153 10 36 chr1 124168317 124168625 -118495728 - AluJo SINE Alu -7 305 6 676 226 38 94 chr1 124168625 124168718 -118495635 - L1MEc LINE L1 -3831 2813 2716 1566 172 35 8 chr1 124168718 124168979 -118495374 + AluJo SINE Alu 1 268 -44 676 226 38 94 chr1 124168979 124169166 -118495187 - L1MEc LINE L1 -3928 2716 2608 247 193 88 0 chr1 124169185 124169242 -118495111 + LTR10A LTR ERV1 1 62 -547 1803 108 53 90 chr1 124169315 124169645 -118494708 + LTR10A LTR ERV1 185 501 -108 2072 88 0 4 chr1 124169645 124169907 -118494446 - AluY SINE Alu -13 298 38 1803 108 53 90 chr1 124169907 124169954 -118494399 + LTR10A LTR ERV1 501 548 -61 292 241 100 28 chr1 124169988 124170131 -118494222 - L1M2 LINE L1 -4436 1947 1394 1624 167 61 0 chr1 124170175 124170468 -118493885 - AluJb SINE Alu -1 311 1 568 209 76 23 chr1 124170857 124171029 -118493324 - MER46C DNA MER2_type -114 224 44 227 234 0 26 chr1 124171257 124171334 -118493019 + T-rich Low_complexity Low_complexity 2 76 0 2058 119 20 14 chr1 124171457 124171752 -118492601 - AluSc SINE Alu -12 297 1 3185 148 27 51 chr1 124171752 124171820 -118492533 - Tigger1 DNA MER2_type -1765 653 585 1813 177 7 0 chr1 124171820 124172120 -118492233 + AluJb SINE Alu 1 302 -10 3185 148 27 51 chr1 124172120 124172254 -118492099 - Tigger1 DNA MER2_type -1833 585 449 249 33 0 0 chr1 124172254 124172284 -118492069 + (TTG)n Simple_repeat Simple_repeat 1 30 0 3185 148 27 51 chr1 124172284 124172749 -118491604 - Tigger1 DNA MER2_type -1969 449 1 204 97 0 0 chr1 124174341 124174372 -118489981 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 298 213 32 64 chr1 124175246 124175340 -118489013 - MER112 DNA MER1_type -164 96 6 770 289 18 9 chr1 124175794 124176012 -118488341 + MIR SINE MIR 1 220 -42 723 97 0 35 chr1 124176022 124176136 -118488217 + AluSp SINE Alu 1 110 -203 722 224 17 34 chr1 124176142 124176567 -118487786 - MER77 LTR ERV1 -100 505 1 2275 78 7 10 chr1 124176853 124177159 -118487194 - AluSg SINE Alu -5 305 1 33 0 0 0 chr1 124177248 124177281 -118487072 + AT_rich Low_complexity Low_complexity 1 33 0 717 130 65 0 chr1 124177281 124177389 -118486964 - FLAM_C SINE Alu -14 119 5 228 370 92 0 chr1 124177432 124177551 -118486802 + MER91C DNA MER1_type 1 130 -10 1675 201 72 35 chr1 124177812 124178299 -118486054 - MLT1D LTR MaLR 0 505 1 2109 133 0 0 chr1 124178850 124179151 -118485202 + AluJb SINE Alu 1 301 -11 739 234 80 25 chr1 124180665 124180904 -118483449 - MIR SINE MIR -3 259 8 766 216 106 26 chr1 124181349 124181576 -118482777 - MER21B LTR ERV1 -11 852 608 378 73 82 0 chr1 124181592 124181702 -118482651 + (TA)n Simple_repeat Simple_repeat 1 119 0 895 191 0 0 chr1 124181702 124181854 -118482499 - FRAM SINE Alu -14 152 1 535 178 7 104 chr1 124181868 124182003 -118482350 - MER21B LTR ERV1 -271 592 471 1311 162 40 2 chr1 124182010 124182292 -118482061 - LTR54 LTR ERV1 -13 497 238 234 0 0 0 chr1 124182319 124182345 -118482008 + (A)n Simple_repeat Simple_repeat 1 26 0 552 178 123 7 chr1 124182358 124182504 -118481849 - LTR54 LTR ERV1 -276 234 72 501 98 0 24 chr1 124183056 124183138 -118481215 - LTR54 LTR ERV1 -429 81 2 831 251 142 34 chr1 124183163 124183430 -118480923 - AluJo SINE Alu -5 297 2 1730 251 46 18 chr1 124183436 124183891 -118480462 - MER21B LTR ERV1 -395 468 1 1493 167 71 166 chr1 124184137 124184950 -118479403 - LTR8A LTR ERV1 0 691 1 1475 247 38 57 chr1 124185091 124185621 -118478732 - MER21-int LTR ERV1 -1729 2462 1943 331 320 32 57 chr1 124186190 124186559 -118477794 - HERVL LTR ERVL -2968 2686 2327 598 280 34 11 chr1 124186645 124186820 -118477533 - MER21-int LTR ERV1 -2319 1872 1694 4302 234 25 56 chr1 124187044 124188228 -118476125 - MER21-int LTR ERV1 -2335 4423 3286 1507 188 52 7 chr1 124188228 124188515 -118475838 - AluJo SINE Alu -12 300 1 4302 234 25 56 chr1 124188515 124188703 -118475650 - MER21-int LTR ERV1 -3472 3286 3094 2233 219 32 33 chr1 124188809 124189380 -118474973 - MER77 LTR ERV1 -4 601 54 2158 123 7 0 chr1 124189539 124189832 -118474521 - AluSx SINE Alu -12 300 6 1604 172 13 43 chr1 124190003 124190305 -118474048 - AluJo SINE Alu -19 293 1 2169 73 44 0 chr1 124190454 124190727 -118473626 - AluSc SINE Alu -24 285 1 25 31 0 0 chr1 124191043 124191075 -118473278 + AT_rich Low_complexity Low_complexity 1 32 0 348 231 77 10 chr1 124191130 124191234 -118473119 + MIR SINE MIR 152 262 0 25 51 0 0 chr1 124191262 124191301 -118473052 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr1 124191526 124191547 -118472806 + AT_rich Low_complexity Low_complexity 1 21 0 363 306 62 6 chr1 124191710 124191870 -118472483 + HAL1 LINE L1 451 619 -1888 252 292 106 18 chr1 124191992 124192218 -118472135 + HAL1 LINE L1 1251 1496 -1011 1015 120 0 0 chr1 124192226 124192359 -118471994 + AluSx SINE Alu 1 133 -180 1040 161 0 6 chr1 124192407 124192593 -118471760 + AluSx SINE Alu 120 304 0 1120 112 0 12 chr1 124192647 124192808 -118471545 - AluSp SINE Alu -18 295 137 573 257 35 6 chr1 124192812 124192983 -118471370 + HAL1 LINE L1 1579 1754 -753 6683 271 140 25 chr1 124193345 124195941 -118468412 + L2 LINE L2 16 2909 -405 1256 148 79 10 chr1 124195943 124196146 -118468207 - AluJb SINE Alu -95 217 1 375 260 59 20 chr1 124196150 124196404 -118467949 - L1MEc LINE L1 -4100 2296 2033 1160 284 102 35 chr1 124196435 124196763 -118467590 - L1MEc LINE L1 -4413 1983 1678 2106 120 10 3 chr1 124196763 124197063 -118467290 + AluSx SINE Alu 1 302 -10 1160 284 102 35 chr1 124197063 124197378 -118466975 - L1MEc LINE L1 -4718 1678 1385 1787 159 3 23 chr1 124197378 124197679 -118466674 + AluJb SINE Alu 1 295 -17 1160 284 102 35 chr1 124197679 124198282 -118466071 - L1MEc LINE L1 -5011 1385 653 312 360 99 18 chr1 124198788 124199010 -118465343 - L1MEc LINE L1 -6121 275 36 886 138 8 0 chr1 124199036 124199166 -118465187 - FLAM_C SINE Alu -1 132 2 735 113 0 106 chr1 124199386 124199496 -118464857 + FLAM_C SINE Alu 5 125 -177 333 0 0 0 chr1 124199496 124199533 -118464820 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2146 120 0 7 chr1 124199533 124199817 -118464536 - AluSg SINE Alu -28 282 1 735 113 0 106 chr1 124199817 124199846 -118464507 + FLAM_C SINE Alu 123 130 -172 200 167 48 0 chr1 124199847 124199889 -118464464 + GA-rich Low_complexity Low_complexity 3 46 0 193 352 44 33 chr1 124199955 124200046 -118464307 + MER5B DNA MER1_type 7 98 -80 2440 93 7 0 chr1 124200201 124200511 -118463842 - AluSx SINE Alu 0 312 1 282 383 55 8 chr1 124200743 124200871 -118463482 - L2 LINE L2 -2 3270 3137 274 359 10 0 chr1 124201471 124201574 -118462779 + L2 LINE L2 3175 3278 -35 1299 204 49 18 chr1 124201608 124201893 -118462460 - AluJo SINE Alu -18 294 1 232 269 70 48 chr1 124202075 124202261 -118462092 - L1MEd LINE L1 -4975 1144 955 359 379 58 41 chr1 124202458 124202751 -118461602 - L1MEd LINE L1 -5361 758 461 439 267 115 44 chr1 124202946 124203371 -118460982 - L1M4c LINE L1 -4749 1677 1242 2460 82 10 0 chr1 124203422 124203727 -118460626 - AluSg SINE Alu -2 308 1 304 206 29 15 chr1 124203727 124203785 -118460568 + L1MEc LINE L1 1084 1145 -5251 276 320 127 13 chr1 124204120 124204270 -118460083 - MIR SINE MIR -17 245 79 323 280 0 20 chr1 124204277 124204377 -118459976 + MIR SINE MIR 140 237 -25 444 142 28 94 chr1 124204863 124204969 -118459384 - FLAM_A SINE Alu -43 99 1 22 56 0 0 chr1 124205046 124205082 -118459271 + AT_rich Low_complexity Low_complexity 1 36 0 2164 122 0 0 chr1 124205282 124205577 -118458776 + AluSc SINE Alu 1 295 -14 2296 101 3 0 chr1 124206155 124206452 -118457901 + AluSx SINE Alu 2 299 -13 2233 115 0 3 chr1 124206494 124206798 -118457555 - AluSc SINE Alu -6 303 1 1466 212 14 20 chr1 124206890 124207182 -118457171 + AluJo SINE Alu 1 290 -22 231 308 154 35 chr1 124207459 124207602 -118456751 + L2 LINE L2 679 838 -2476 219 393 87 14 chr1 124207669 124207944 -118456409 + L2 LINE L2 2592 2886 -428 750 161 32 8 chr1 124208613 124208737 -118455616 + FLAM_C SINE Alu 1 127 -16 221 287 191 9 chr1 124209654 124209769 -118454584 + MIR SINE MIR 124 259 -3 180 0 0 0 chr1 124210077 124210097 -118454256 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 2454 62 0 0 chr1 124210122 124210414 -118453939 - AluY SINE Alu -19 292 1 1049 224 54 59 chr1 124210766 124211155 -118453198 - Tigger8 DNA MER2_type -86 580 194 1778 167 13 0 chr1 124212379 124212685 -118451668 + AluJb SINE Alu 3 312 0 2371 73 0 17 chr1 124213428 124213728 -118450625 + AluSg SINE Alu 1 295 -15 615 153 20 0 chr1 124213958 124214056 -118450297 + AluSg/x SINE Alu 195 294 -18 328 233 165 0 chr1 124215194 124215211 -118449142 - L1MA10 LINE L1 0 6334 6318 674 175 315 0 chr1 124215211 124215411 -118448942 - L1ME2 LINE L1 -9 6155 5893 321 351 44 39 chr1 124216182 124216387 -118447966 + L3 LINE CR1 1271 1476 -101 31 76 0 0 chr1 124216387 124216453 -118447900 + AT_rich Low_complexity Low_complexity 1 66 0 581 252 63 0 chr1 124216482 124216641 -118447712 + MER58C DNA MER1_type 47 215 0 201 244 0 0 chr1 124217927 124217968 -118446385 + GA-rich Low_complexity Low_complexity 2 42 0 28 79 0 0 chr1 124218080 124218143 -118446210 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr1 124218748 124218772 -118445581 + AT_rich Low_complexity Low_complexity 1 24 0 379 242 74 95 chr1 124218955 124219145 -118445208 + MER5A DNA MER1_type 4 189 0 995 230 172 92 chr1 124219153 124219219 -118445134 - Charlie2 DNA MER1_type 0 2862 2803 966 82 0 22 chr1 124219219 124219353 -118445000 + FLAM_C SINE Alu 1 131 -2 995 230 172 92 chr1 124219353 124220207 -118444146 - Charlie2 DNA MER1_type -59 2803 1869 694 232 33 116 chr1 124220211 124220547 -118443806 - Charlie2 DNA MER1_type -2456 326 19 304 277 164 38 chr1 124220721 124220889 -118443464 - MIR SINE MIR -62 200 17 1941 158 37 60 chr1 124221611 124222042 -118442311 - L1MA7 LINE L1 -223 6068 5648 997 191 48 4 chr1 124222042 124222273 -118442080 + L1MA7 LINE L1 6051 6291 0 477 263 51 17 chr1 124223039 124223214 -118441139 - L1MA9 LINE L1 -37 6275 6095 21 0 0 0 chr1 124223354 124223375 -118440978 + AT_rich Low_complexity Low_complexity 1 21 0 3498 128 30 96 chr1 124223500 124223689 -118440664 - LTR8A LTR ERV1 0 727 527 1866 134 58 0 chr1 124223689 124223980 -118440373 - AluSg SINE Alu -1 309 2 3498 128 30 96 chr1 124223980 124224564 -118439789 - LTR8A LTR ERV1 -200 527 5 1585 154 116 29 chr1 124224564 124224908 -118439445 + THE1C LTR MaLR 1 375 0 2268 88 11 0 chr1 124224963 124225270 -118439083 + AluSp SINE Alu 1 310 0 202 283 117 17 chr1 124225441 124225501 -118438852 - L2 LINE L2 -20 3252 3187 1965 158 130 0 chr1 124225555 124225986 -118438367 - L1MB7 LINE L1 -16 6168 5682 352 89 18 0 chr1 124226031 124226087 -118438266 - MSTB LTR MaLR -51 375 319 259 311 101 0 chr1 124226803 124226922 -118437431 - L2 LINE L2 -5 3308 3178 2096 118 14 3 chr1 124226953 124227250 -118437103 - AluSx SINE Alu -12 300 1 218 318 85 69 chr1 124227314 124227503 -118436850 - L2 LINE L2 -164 3108 2917 1923 141 7 10 chr1 124227625 124227929 -118436424 + AluJo SINE Alu 3 305 -7 198 200 75 0 chr1 124227969 124228009 -118436344 + MIR SINE MIR 219 261 -1 201 297 132 22 chr1 124228134 124228225 -118436128 - L2 LINE L2 -38 3234 3134 351 308 83 50 chr1 124228414 124228654 -118435699 - L2 LINE L2 -353 2961 2714 387 0 0 0 chr1 124228848 124228891 -118435462 + (TG)n Simple_repeat Simple_repeat 1 43 0 1134 184 139 37 chr1 124228898 124229171 -118435182 - AluJo SINE Alu 0 310 13 216 0 0 0 chr1 124229266 124229290 -118435063 + (T)n Simple_repeat Simple_repeat 1 24 0 2305 119 3 0 chr1 124229330 124229642 -118434711 - AluSp SINE Alu 0 313 1 256 250 129 29 chr1 124229655 124229795 -118434558 - L1MC/D LINE L1 -1959 5849 5696 * 2545 224 48 40 chr1 124229791 124230563 -118433790 + L1ME1 LINE L1 5381 6158 -8 545 283 99 43 chr1 124230616 124230990 -118433363 - L1MC/D LINE L1 -460 5661 5267 1531 190 3 21 chr1 124231597 124231881 -118432472 + AluJb SINE Alu 24 302 -10 1384 151 82 127 chr1 124232793 124233209 -118431144 - MLT2D LTR ERVL 0 414 18 2301 224 104 82 chr1 124234279 124235543 -118428810 - L1MC5 LINE L1 -47 7914 6624 222 37 0 0 chr1 124235547 124235574 -118428779 + (TG)n Simple_repeat Simple_repeat 1 27 0 212 333 127 13 chr1 124237780 124237930 -118426423 + MIR3 SINE MIR 30 196 -12 2038 129 0 35 chr1 124238473 124238783 -118425570 + AluSx SINE Alu 1 299 -13 1923 132 7 20 chr1 124238955 124239093 -118425260 + AluSx SINE Alu 1 139 -173 1646 160 42 7 chr1 124239093 124239381 -118424972 + AluSx SINE Alu 1 298 -14 1923 132 7 20 chr1 124239381 124239537 -118424816 + AluSx SINE Alu 139 291 -21 250 260 101 75 chr1 124240288 124240515 -118423838 + L2 LINE L2 2220 2452 -862 570 328 39 6 chr1 124240561 124240741 -118423612 + L2 LINE L2 2591 2776 -538 186 43 0 0 chr1 124241133 124241156 -118423197 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 317 344 158 6 chr1 124241567 124241595 -118422758 + MIR SINE MIR 10 32 -230 2430 37 41 0 chr1 124241595 124241890 -118422463 + AluY SINE Alu 1 307 -4 317 344 158 6 chr1 124241890 124242044 -118422309 + MIR SINE MIR 32 220 -42 1839 122 28 31 chr1 124242416 124242704 -118421649 + AluSx SINE Alu 1 287 -25 25 51 0 0 chr1 124242942 124242981 -118421372 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr1 124243537 124243562 -118420791 + AT_rich Low_complexity Low_complexity 1 25 0 249 109 0 0 chr1 124243974 124244020 -118420333 + (T)n Simple_repeat Simple_repeat 1 46 0 240 100 0 0 chr1 124245298 124245338 -118419015 + (A)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr1 124247153 124247174 -118417179 + AT_rich Low_complexity Low_complexity 1 21 0 201 171 0 0 chr1 124249781 124249816 -118414537 + (TTA)n Simple_repeat Simple_repeat 2 36 0 327 291 25 0 chr1 124250211 124250290 -118414063 - L2 LINE L2 -50 3222 3142 292 312 162 64 chr1 124250577 124251517 -118412836 - L2 LINE L2 -508 2806 1775 317 335 76 30 chr1 124251627 124251824 -118412529 + MIR SINE MIR 57 262 0 325 228 22 88 chr1 124252177 124252313 -118412040 + L1MEd LINE L1 2 128 -5991 383 308 8 0 chr1 124252332 124252449 -118411904 + L1MC4 LINE L1 7446 7563 -479 350 367 119 19 chr1 124252508 124252887 -118411466 + L1MC4 LINE L1 7625 8041 -1 1359 166 14 78 chr1 124253258 124253541 -118410812 + AluJb SINE Alu 33 297 -15 287 307 158 31 chr1 124253552 124253780 -118410573 + L1MEd LINE L1 561 817 -5302 242 231 67 39 chr1 124254111 124254215 -118410138 + L1MEd LINE L1 1103 1209 -4910 289 279 194 4 chr1 124254331 124254568 -118409785 + L1MEd LINE L1 1314 1595 -4534 2277 110 0 7 chr1 124254648 124254957 -118409396 + AluSq SINE Alu 1 307 -6 270 0 0 0 chr1 124254957 124254987 -118409366 + (TA)n Simple_repeat Simple_repeat 2 31 0 841 154 0 8 chr1 124255013 124255143 -118409210 + FLAM_C SINE Alu 1 129 -4 2172 104 7 7 chr1 124255187 124255484 -118408869 + AluSx SINE Alu 1 297 -15 237 258 136 0 chr1 124255492 124255558 -118408795 + L1M4b LINE L1 15 89 -6770 3142 274 125 27 chr1 124255627 124256858 -118407495 + L1M4b LINE L1 101 1210 -5749 1901 135 38 0 chr1 124256858 124257147 -118407206 + AluSx SINE Alu 1 300 -12 3142 274 125 27 chr1 124257147 124258020 -118406333 + L1M4b LINE L1 1210 2415 -4544 1854 167 3 23 chr1 124258360 124258665 -118405688 + AluJo SINE Alu 7 305 -7 2177 114 10 13 chr1 124258714 124259021 -118405332 + AluSg SINE Alu 1 306 -4 239 194 65 0 chr1 124259078 124259140 -118405213 + L1M4b LINE L1 2927 2992 -3965 5465 84 13 4 chr1 124259173 124259922 -118404431 - L1PB1 LINE L1 -1 6150 5395 3687 216 95 15 chr1 124259921 124260458 -118403895 + L1M4b LINE L1 3016 3509 -3448 * 2532 47 0 7 chr1 124260458 124260759 -118403594 + AluY SINE Alu 1 299 -12 3687 216 95 15 chr1 124260759 124261408 -118402945 + L1M4b LINE L1 3509 4297 -2660 1973 140 14 3 chr1 124261411 124261703 -118402650 + AluSx SINE Alu 1 295 -17 1526 191 137 3 chr1 124261703 124262091 -118402262 + L1M4b LINE L1 5000 5439 -1518 1116 163 154 40 chr1 124262099 124262326 -118402027 - AluJo SINE Alu -35 277 25 38 51 0 0 chr1 124262361 124262420 -118401933 + AT_rich Low_complexity Low_complexity 1 59 0 1177 158 126 125 chr1 124262497 124262935 -118401418 - LTR36 LTR ERV1 0 611 175 2228 124 0 19 chr1 124262935 124263249 -118401104 - AluSq SINE Alu -5 308 1 1160 202 9 92 chr1 124263249 124263576 -118400777 - AluJb SINE Alu -1 301 2 1177 158 126 125 chr1 124263576 124263704 -118400649 - LTR36 LTR ERV1 -435 176 2 475 312 50 57 chr1 124263722 124264183 -118400170 - LTR36-int LTR ERV1 -18 8102 6621 341 215 76 0 chr1 124264202 124264281 -118400072 - MER49 LTR ERV1 -163 760 676 951 183 83 48 chr1 124264287 124264517 -118399836 - LTR36-int LTR ERV1 -181 6150 5913 7992 169 97 28 chr1 124264547 124266327 -118398026 - LTR36-int LTR ERV1 -578 5753 3851 744 181 0 0 chr1 124266329 124266456 -118397897 + AluSq/x SINE Alu 2 128 -185 1851 118 12 23 chr1 124266456 124266789 -118397564 - MER4A LTR ERV1 -16 648 261 685 82 10 20 chr1 124266797 124266895 -118397458 - MER4A LTR ERV1 -567 97 1 17345 115 51 53 chr1 124266897 124267560 -118396793 - MER4A-int LTR ERV1 -1 6597 5934 2044 125 7 0 chr1 124267560 124267847 -118396506 + AluY SINE Alu 1 289 -22 17345 115 51 53 chr1 124267847 124267861 -118396492 - MER4A-int LTR ERV1 -664 5934 5921 2101 132 0 10 chr1 124267861 124268150 -118396203 - AluSg SINE Alu -20 290 5 17345 115 51 53 chr1 124268150 124268701 -118395652 - MER4A-int LTR ERV1 -677 5921 5370 1921 146 28 0 chr1 124268701 124268989 -118395364 + AluSp SINE Alu 1 296 -17 17345 115 51 53 chr1 124268989 124270803 -118393550 - MER4A-int LTR ERV1 -1228 5370 3554 2188 120 3 0 chr1 124270803 124271095 -118393258 - AluSg SINE Alu -17 293 1 17345 115 51 53 chr1 124271095 124271624 -118392729 - MER4A-int LTR ERV1 -3044 3554 3025 2382 98 3 0 chr1 124271624 124271921 -118392432 + AluSp SINE Alu 1 298 -15 17345 115 51 53 chr1 124271921 124273326 -118391027 - MER4A-int LTR ERV1 -3573 3025 696 2018 182 67 16 chr1 124273326 124273769 -118390584 + LTR2B LTR ERV1 1 490 0 3115 151 42 68 chr1 124273769 124275414 -118388939 + Harlequin LTR ERV1 1 1422 -5474 * 17954 49 0 8 chr1 124275403 124277563 -118386790 + Harlequin LTR ERV1 1807 3949 -2947 2222 161 0 0 chr1 124277543 124277879 -118386474 + Harlequin LTR ERV1 4561 4896 -2917 * 625 178 0 10 chr1 124277874 124277975 -118386378 + Harlequin LTR ERV1 4997 5096 -2717 * 3726 162 0 2 chr1 124277964 124278539 -118385814 + Harlequin LTR ERV1 5469 6042 -1771 * 6935 116 5 2 chr1 124278533 124279489 -118384864 + Harlequin LTR ERV1 5937 6895 -1 1977 199 63 27 chr1 124279508 124279951 -118384402 + LTR2B LTR ERV1 32 490 0 3340 148 118 125 chr1 124279958 124280444 -118383909 - MER4A-int LTR ERV1 -5592 1006 518 2159 136 0 0 chr1 124280444 124280746 -118383607 - AluSg SINE Alu -8 302 1 3340 148 118 125 chr1 124280746 124281186 -118383167 - MER4A-int LTR ERV1 -6080 518 85 2328 108 0 0 chr1 124281186 124281492 -118382861 + AluSg SINE Alu 1 306 -4 3340 148 118 125 chr1 124281492 124281577 -118382776 - MER4A-int LTR ERV1 -6513 85 1 1951 120 11 22 chr1 124281582 124281936 -118382417 - MER4A LTR ERV1 -2 662 254 647 112 0 10 chr1 124281937 124282035 -118382318 - MER4A LTR ERV1 -567 97 1 1107 136 0 13 chr1 124282035 124282190 -118382163 + AluSg/x SINE Alu 109 261 -51 195 42 0 0 chr1 124282207 124282231 -118382122 + (GA)n Simple_repeat Simple_repeat 2 25 0 3659 143 17 2 chr1 124282231 124282820 -118381533 - MER83A-int LTR ERV1 -1572 3308 2711 1775 166 21 0 chr1 124282816 124283099 -118381254 - MER83A-int LTR ERV1 -2958 1922 1634 * 641 116 0 11 chr1 124283088 124283183 -118381170 - MER83A-int LTR ERV1 -2530 4068 3975 * 3768 139 102 72 chr1 124283174 124283402 -118380951 - MER83A-int LTR ERV1 -6310 1810 1590 1290 138 92 138 chr1 124283402 124283589 -118380764 - AluJb SINE Alu -22 290 121 548 14 14 0 chr1 124283589 124283658 -118380695 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 1290 138 92 138 chr1 124283658 124283774 -118380579 - AluJb SINE Alu -191 121 1 3768 139 102 72 chr1 124283774 124284468 -118379885 - MER83A-int LTR ERV1 -6530 1590 860 326 259 28 37 chr1 124284553 124284661 -118379692 - MER83A-int LTR ERV1 -2734 1551 1445 679 223 42 67 chr1 124284983 124285266 -118379087 + L1MC5 LINE L1 7251 7526 -435 2468 88 0 3 chr1 124285273 124285579 -118378774 + AluSx SINE Alu 1 305 -7 360 248 78 78 chr1 124285694 124285900 -118378453 + L1ME3A LINE L1 5965 6170 0 1988 152 7 3 chr1 124285904 124286207 -118378146 - AluSx SINE Alu -8 304 1 2520 71 0 0 chr1 124286216 124286512 -118377841 - AluY SINE Alu -15 296 1 2239 94 19 7 chr1 124286564 124286871 -118377482 - AluSx SINE Alu -1 311 1 368 276 146 35 chr1 124286880 124287049 -118377304 + L1M4 LINE L1 3348 3557 -2589 2131 137 0 13 chr1 124287049 124287364 -118376989 + AluSx SINE Alu 1 311 -1 368 276 146 35 chr1 124287364 124287455 -118376898 + L1M4 LINE L1 3557 3637 -2509 1801 165 7 3 chr1 124287852 124288149 -118376204 - AluJb SINE Alu -6 306 9 226 323 20 0 chr1 124290348 124290447 -118373906 - MIR SINE MIR -72 136 36 * 227 204 0 0 chr1 124290444 124290488 -118373865 - L2 LINE L2 -5 3267 3224 816 293 16 12 chr1 124291077 124291330 -118373023 - MIR SINE MIR 0 262 9 363 200 298 69 chr1 124292296 124292601 -118371752 + MLT1J LTR MaLR 81 455 -56 3255 177 42 5 chr1 124292946 124293589 -118370764 + LTR65 LTR ERV1 1 667 -2 369 0 0 0 chr1 124295672 124295713 -118368640 + (CA)n Simple_repeat Simple_repeat 2 42 0 2095 106 6 34 chr1 124297398 124297719 -118366634 - AluSx SINE Alu 0 312 1 304 278 74 0 chr1 124297721 124297829 -118366524 - MIR SINE MIR -68 194 79 445 337 87 26 chr1 124297834 124298181 -118366172 - MLT1I LTR MaLR -2 407 40 192 179 0 0 chr1 124298268 124298307 -118366046 + C-rich Low_complexity Low_complexity 2 40 0 2305 106 0 22 chr1 124298740 124299093 -118365260 + AluSx SINE Alu 1 312 0 905 171 13 0 chr1 124299121 124299273 -118365080 + FRAM SINE Alu 1 154 -22 1961 147 3 0 chr1 124299290 124299575 -118364778 + AluSx SINE Alu 4 289 -23 264 254 32 132 chr1 124299965 124300245 -118364108 - LTR67 LTR ERVL 0 557 306 269 163 61 0 chr1 124300445 124300494 -118363859 + MER58 DNA MER1_type 2345 2396 -24 222 118 0 0 chr1 124300616 124300650 -118363703 + (T)n Simple_repeat Simple_repeat 1 34 0 738 167 9 0 chr1 124301162 124301276 -118363077 - FLAM_A SINE Alu -18 115 1 805 263 130 45 chr1 124301522 124301804 -118362549 - MLT1J LTR MaLR -15 496 177 1531 186 8 88 chr1 124301804 124302201 -118362152 + MLT1A1 LTR MaLR 1 365 0 805 263 130 45 chr1 124302201 124302272 -118362081 - MLT1J LTR MaLR -334 177 113 1152 257 112 5 chr1 124302861 124303246 -118361107 + LTR16A LTR ERVL 2 427 -23 1609 193 30 0 chr1 124303593 124303863 -118360490 - AluJb SINE Alu -30 282 5 3402 136 80 12 chr1 124303928 124304501 -118359852 + LTR9 LTR ERV1 1 612 0 721 283 96 33 chr1 124304959 124305341 -118359012 - LTR67 LTR ERVL -2 555 97 316 284 76 92 chr1 124305503 124305707 -118358646 + L2 LINE L2 2303 2502 -812 1948 144 17 0 chr1 124305707 124306006 -118358347 - AluSg SINE Alu -2 308 5 316 284 76 92 chr1 124306006 124306104 -118358249 + L2 LINE L2 2502 2600 -714 2213 108 7 0 chr1 124306877 124307173 -118357180 + AluSc SINE Alu 1 298 -11 341 302 24 8 chr1 124307204 124307330 -118357023 + L2 LINE L2 2925 3052 -220 2410 187 93 8 chr1 124307681 124307716 -118356637 - MLT2B2 LTR ERVL -4 511 480 565 76 22 0 chr1 124307716 124307808 -118356545 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 2410 187 93 8 chr1 124307808 124308026 -118356327 - MLT2B2 LTR ERVL -35 480 282 189 0 0 0 chr1 124308026 124308047 -118356306 + (GA)n Simple_repeat Simple_repeat 2 22 0 2410 187 93 8 chr1 124308047 124308263 -118356090 - MLT2B2 LTR ERVL -233 282 1 2486 194 114 31 chr1 124309575 124310226 -118354127 + L1MC/D LINE L1 2345 3049 -3097 25 0 0 0 chr1 124310253 124310278 -118354075 + AT_rich Low_complexity Low_complexity 1 25 0 479 315 71 41 chr1 124310290 124310585 -118353768 - L2 LINE L2 -60 3253 2950 1032 226 103 56 chr1 124311148 124311443 -118352910 - Charlie1a DNA MER1_type -2427 334 21 1539 174 17 158 chr1 124311443 124311904 -118352449 + MSTD LTR MaLR 1 396 0 1032 226 103 56 chr1 124311904 124311927 -118352426 - Charlie1a DNA MER1_type -2740 21 1 400 230 0 11 chr1 124312018 124312105 -118352248 - LTR67 LTR ERVL -40 517 432 246 273 34 148 chr1 124312330 124312539 -118351814 - LTR67 LTR ERVL -368 189 5 679 346 36 9 chr1 124312552 124312884 -118351469 - L2 LINE L2 -1062 2252 1912 571 291 67 70 chr1 124313444 124313729 -118350624 + L2 LINE L2 2985 3268 -4 207 0 0 0 chr1 124314720 124314743 -118349610 + (A)n Simple_repeat Simple_repeat 1 23 0 3606 123 46 4 chr1 124315341 124315843 -118348510 - MER1A DNA MER1_type -4 523 1 201 274 161 0 chr1 124316303 124316365 -118347988 - L2 LINE L2 0 3272 3201 5486 217 89 16 chr1 124316380 124317930 -118346423 - L1M4 LINE L1 -1206 4940 3277 654 212 7 0 chr1 124318021 124318158 -118346195 + L1MC/D LINE L1 4109 4246 -1900 956 274 220 13 chr1 124318158 124318841 -118345512 - L2 LINE L2 -2444 870 47 247 298 48 24 chr1 124320665 124320789 -118343564 + L1MC/D LINE L1 5508 5634 -487 1901 201 69 33 chr1 124321206 124321728 -118342625 + MER74A LTR ERVL 1 622 0 360 229 124 0 chr1 124321994 124322099 -118342254 + MER103 DNA DNA 30 147 -19 245 151 0 0 chr1 124324900 124324953 -118339400 - LTR66 LTR ERVL -164 446 394 2127 101 0 0 chr1 124324981 124325248 -118339105 - AluSg SINE Alu -43 267 1 235 178 22 0 chr1 124325251 124325296 -118339057 + L1MC/D LINE L1 5856 5901 -1907 364 290 38 38 chr1 124325317 124325448 -118338905 - MLT1J1 LTR MaLR -62 384 254 * 811 228 46 21 chr1 124325443 124325667 -118338686 - MLT1J2 LTR MaLR -206 240 7 2215 133 0 0 chr1 124325809 124326117 -118338236 - AluSx SINE Alu -4 308 1 1867 150 24 58 chr1 124326361 124326742 -118337611 - THE1C LTR MaLR -7 368 1 1236 202 14 5 chr1 124326996 124327209 -118337144 - MER20 DNA MER1_type -4 215 1 234 231 0 0 chr1 124327209 124327261 -118337092 + MIR SINE MIR 102 153 -109 424 111 32 0 chr1 124327416 124327479 -118336874 + BC200 scRNA scRNA 1 65 -135 207 0 0 0 chr1 124327483 124327506 -118336847 + (TAA)n Simple_repeat Simple_repeat 1 23 0 701 250 86 27 chr1 124327519 124327739 -118336614 - MLT1J2 LTR MaLR -153 297 65 192 40 0 0 chr1 124327790 124327815 -118336538 + (TG)n Simple_repeat Simple_repeat 1 25 0 2460 102 57 25 chr1 124328702 124329055 -118335298 + THE1B LTR MaLR 1 364 0 2207 105 0 43 chr1 124329650 124330007 -118334346 - AluSx SINE Alu 0 343 1 1482 213 113 27 chr1 124330133 124330541 -118333812 - LTR47B LTR ERVL 0 443 1 454 337 0 0 chr1 124330569 124330738 -118333615 + (TG)n Simple_repeat Simple_repeat 2 170 0 5134 179 26 1 chr1 124330773 124331642 -118332711 + MER54A LTR ERVL 8 898 -3 3361 42 3 0 chr1 124332395 124332780 -118331573 - L1PA4 LINE L1 0 6155 5770 44189 47 5 1 chr1 124332798 124338927 -118325426 - L1PA3 LINE L1 0 6155 1 1519 188 18 72 chr1 124338933 124339333 -118325020 + MER113 DNA MER1_type? 90 467 -54 676 269 81 45 chr1 124339368 124339810 -118324543 + HAL1b LINE L1 52 509 -839 851 198 96 15 chr1 124339812 124340009 -118324344 + AluJb SINE Alu 86 298 -14 2485 52 7 10 chr1 124340060 124340370 -118323983 - AluY SINE Alu -2 309 1 743 291 101 17 chr1 124340370 124340786 -118323567 + HAL1b LINE L1 538 988 -360 1671 248 81 25 chr1 124340786 124341086 -118323267 - MLT1G1 LTR MaLR 0 595 313 2462 158 70 5 chr1 124341086 124341486 -118322867 - MSTB LTR MaLR 0 426 1 1671 248 81 25 chr1 124341486 124341695 -118322658 - MLT1G1 LTR MaLR -282 313 21 467 254 115 38 chr1 124341737 124342024 -118322329 + HAL1b LINE L1 1040 1348 0 304 236 113 28 chr1 124342112 124342218 -118322135 - MIR3 SINE MIR -17 191 77 235 242 30 30 chr1 124343585 124343651 -118320702 - L2 LINE L2 -7 3265 3200 222 318 55 68 chr1 124343944 124344164 -118320189 - L2 LINE L2 -214 3058 2842 308 260 140 0 chr1 124345150 124345250 -118319103 - MIR SINE MIR -118 144 31 2081 185 3 8 chr1 124345434 124345802 -118318551 - MLT2D LTR ERVL -48 366 1 4561 246 82 83 chr1 124345803 124348186 -118316167 - HAL1 LINE L1 -123 2384 3 187 270 126 45 chr1 124348868 124348979 -118315374 + L2 LINE L2 3151 3270 -2 1209 241 83 19 chr1 124349648 124350022 -118314331 + L1ME1 LINE L1 5764 6161 -5 182 271 328 8 chr1 124350750 124350872 -118313481 - MIR SINE MIR -65 197 37 262 308 0 26 chr1 124350895 124351012 -118313341 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 672 192 170 16 chr1 124351013 124351202 -118313151 - MIR SINE MIR -17 245 22 919 243 98 13 chr1 124352149 124352454 -118311899 + L2 LINE L2 2474 2804 -510 3158 88 25 7 chr1 124352466 124352897 -118311456 - MLT2A1 LTR ERVL -5 439 1 918 271 88 37 chr1 124352941 124353318 -118311035 + L2 LINE L2 2913 3308 -5 455 249 104 26 chr1 124353909 124354102 -118310251 - L2 LINE L2 -4 3309 3102 1590 189 10 17 chr1 124354174 124354471 -118309882 + AluJo SINE Alu 1 295 -17 1783 236 124 23 chr1 124354810 124355425 -118308928 + Charlie7 DNA MER1_type 11 687 -1925 2639 196 50 4 chr1 124355614 124356079 -118308274 + MER66B LTR ERV1 1 486 0 545 254 67 24 chr1 124356887 124357052 -118307301 + MIR SINE MIR 91 262 0 417 263 174 21 chr1 124357237 124357427 -118306926 + MIR SINE MIR 28 246 -16 273 310 69 29 chr1 124357474 124357648 -118306705 - MIR SINE MIR -3 259 79 383 182 104 71 chr1 124358381 124358535 -118305818 - L1ME4a LINE L1 -1 6120 5962 241 254 60 0 chr1 124358699 124358766 -118305587 - L1ME4a LINE L1 -417 5745 5675 279 247 0 0 chr1 124358890 124358963 -118305390 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 248 231 0 0 chr1 124358966 124359018 -118305335 + L1MC4 LINE L1 6653 6704 -1338 438 311 72 0 chr1 124359018 124359185 -118305168 - L2 LINE L2 -26 3287 3109 219 362 0 0 chr1 124359249 124359318 -118305035 - L2 LINE L2 0 3313 3245 191 382 29 7 chr1 124359399 124359535 -118304818 + L2 LINE L2 3163 3301 -12 294 29 0 0 chr1 124360053 124360088 -118304265 + (CAA)n Simple_repeat Simple_repeat 2 36 0 464 300 34 32 chr1 124360167 124360399 -118303954 - MIR SINE MIR -17 245 21 1602 127 25 123 chr1 124360524 124360791 -118303562 - AluJb SINE Alu -20 292 61 2158 101 78 32 chr1 124360791 124361138 -118303215 + THE1B LTR MaLR 2 364 0 1602 127 25 123 chr1 124361138 124361194 -118303159 - AluJb SINE Alu -251 61 1 6055 122 42 13 chr1 124361197 124362180 -118302173 - L1MC1 LINE L1 0 6333 5323 836 190 0 46 chr1 124362181 124362355 -118301998 - FRAM SINE Alu -3 173 8 5271 215 39 10 chr1 124362370 124363616 -118300737 - L1MCa LINE L1 -2002 4424 3144 1972 188 9 137 chr1 124364466 124364739 -118299614 - L1MCa LINE L1 -3267 3159 2853 186 43 0 0 chr1 124364739 124364762 -118299591 + (TTG)n Simple_repeat Simple_repeat 2 24 0 956 125 0 0 chr1 124364766 124364894 -118299459 - FRAM SINE Alu -30 146 19 1972 188 9 137 chr1 124364894 124365538 -118298815 - L1MCa LINE L1 -3576 2850 2257 1356 110 31 0 chr1 124365541 124365732 -118298621 + MER7A DNA MER2_type 1 195 -151 1036 95 101 11 chr1 124365732 124365911 -118298442 - L1MCa LINE L1 -4299 2127 1933 1348 184 0 0 chr1 124365926 124366144 -118298209 + AluJb SINE Alu 31 248 -64 9300 138 30 17 chr1 124366147 124367957 -118296396 - L1MCa LINE L1 -4478 1948 24 235 238 63 0 chr1 124368351 124368414 -118295939 + L2 LINE L2 3206 3272 0 1918 141 0 4 chr1 124368643 124368912 -118295441 + AluSx SINE Alu 1 268 -44 180 0 0 0 chr1 124368922 124368942 -118295411 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 894 237 137 26 chr1 124369057 124369474 -118294879 - L1ME4a LINE L1 -11 6110 5648 21 0 0 0 chr1 124369680 124369701 -118294652 + AT_rich Low_complexity Low_complexity 1 21 0 386 247 0 0 chr1 124369742 124369835 -118294518 - L2 LINE L2 0 3313 3221 203 253 89 0 chr1 124371922 124372001 -118292352 + L2 LINE L2 3155 3240 -32 213 281 0 0 chr1 124372932 124372989 -118291364 + MIR SINE MIR 92 148 -60 274 284 54 0 chr1 124373659 124373733 -118290620 + MIR SINE MIR 76 153 -109 2432 92 27 0 chr1 124373892 124374227 -118290126 - L1PA11 LINE L1 -14 6160 5817 2388 209 73 5 chr1 124374227 124374781 -118289572 + L1MB7 LINE L1 5593 6184 0 1454 244 88 70 chr1 124375138 124375757 -118288596 - MLT1G LTR MaLR 0 590 1 1249 276 143 42 chr1 124375758 124375948 -118288405 + L2 LINE L2 1314 1484 -1830 2081 138 48 25 chr1 124375948 124376304 -118288049 + THE1B LTR MaLR 1 364 0 1249 276 143 42 chr1 124376304 124376871 -118287482 + L2 LINE L2 1484 2147 -1167 1796 214 47 17 chr1 124376874 124377432 -118286921 + MLT2E LTR ERVL 1 628 0 542 271 34 24 chr1 124377696 124377903 -118286450 + ERVL-E LTR ERVL 319 527 -5237 310 219 0 52 chr1 124377915 124378011 -118286342 + L1MB8 LINE L1 6088 6178 0 608 252 38 6 chr1 124378012 124378171 -118286182 + ERVL-E LTR ERVL 534 697 -5067 1711 244 175 52 chr1 124378333 124379337 -118285016 + L2 LINE L2 2180 3313 0 401 389 33 3 chr1 124379510 124379811 -118284542 + L2 LINE L2 2575 2884 -430 406 314 62 65 chr1 124379885 124380226 -118284127 + L2 LINE L2 2931 3270 -2 416 254 44 0 chr1 124381574 124381688 -118282665 - MIR3 SINE MIR -6 202 84 549 327 90 0 chr1 124382405 124382628 -118281725 - MIR SINE MIR -6 256 14 185 307 0 23 chr1 124382653 124382741 -118281612 + MIR SINE MIR 170 255 -7 1683 204 70 61 chr1 124384489 124385000 -118279353 + MLT2B1 LTR ERVL 5 520 0 233 320 10 10 chr1 124385123 124385223 -118279130 + LTR67 LTR ERVL 125 224 -333 254 254 63 32 chr1 124385310 124385436 -118278917 + LTR67 LTR ERVL 428 557 0 291 323 159 5 chr1 124385612 124385801 -118278552 - MIR SINE MIR -20 242 25 365 265 51 8 chr1 124385973 124386090 -118278263 - LTR67 LTR ERVL -24 533 412 186 273 0 0 chr1 124386545 124386589 -118277764 - L3 LINE CR1 -6 1571 1528 472 271 40 20 chr1 124386768 124386919 -118277434 - MIR3 SINE MIR -50 158 5 387 329 89 18 chr1 124386999 124387224 -118277129 + L2 LINE L2 3012 3252 -61 204 269 39 0 chr1 124387368 124387446 -118276907 + MIR SINE MIR 112 192 -70 258 213 147 47 chr1 124387644 124387794 -118276559 - L1ME4a LINE L1 -16 6105 5941 546 222 26 26 chr1 124387896 124388090 -118276263 - L1M4 LINE L1 -3093 3053 2860 410 132 13 0 chr1 124388249 124388325 -118276028 + (TG)n Simple_repeat Simple_repeat 2 78 0 1327 259 141 38 chr1 124388396 124388894 -118275459 + MLT1H LTR MaLR 1 549 0 214 260 96 0 chr1 124388909 124388982 -118275371 + MIR SINE MIR 183 262 0 671 261 123 11 chr1 124389008 124389284 -118275069 - L1ME4a LINE L1 -318 5803 5497 1006 238 37 7 chr1 124389296 124389565 -118274788 - L1ME LINE L1 -303 5818 5542 556 206 55 27 chr1 124389597 124389743 -118274610 - L1MC5 LINE L1 -51 7910 7761 211 353 12 12 chr1 124390623 124390708 -118273645 + MIR SINE MIR 20 104 -158 523 259 0 65 chr1 124390725 124390820 -118273533 - L2 LINE L2 0 3272 3187 2218 110 3 0 chr1 124390820 124391121 -118273232 + AluSc SINE Alu 1 302 -7 523 259 0 65 chr1 124391121 124391164 -118273189 - L2 LINE L2 -85 3187 3143 186 315 0 0 chr1 124391967 124392021 -118272332 + MIR SINE MIR 180 233 -29 910 184 0 46 chr1 124392556 124392730 -118271623 + MER41D LTR ERV1 392 557 0 33558 96 11 63 chr1 124394676 124394701 -118269652 - L1PA7 LINE L1 0 6154 6129 2239 71 7 4 chr1 124394701 124394981 -118269372 - AluY SINE Alu -17 294 14 33558 96 11 63 chr1 124394981 124399176 -118265177 - L1PA7 LINE L1 -25 6129 1716 6829 68 5 284 chr1 124399176 124401068 -118263285 - SVA Other Other -2 1384 22 33558 96 11 63 chr1 124401068 124401185 -118263168 - L1PA7 LINE L1 -4438 1716 1594 2515 76 0 0 chr1 124401185 124401489 -118262864 + AluY SINE Alu 1 304 -7 33558 96 11 63 chr1 124401489 124403648 -118260705 - L1PA7 LINE L1 -4560 1594 12 274 270 68 34 chr1 124403887 124404035 -118260318 - MER5A DNA MER1_type -2 187 35 * 365 290 24 8 chr1 124403928 124404052 -118260301 + MER5A DNA MER1_type 58 183 -6 995 171 57 5 chr1 124404066 124404259 -118260094 - MER3 DNA MER1_type 0 209 7 699 295 17 0 chr1 124404554 124404727 -118259626 - MER91A DNA MER1_type -20 176 1 22 0 0 0 chr1 124405334 124405356 -118258997 + AT_rich Low_complexity Low_complexity 1 22 0 205 281 50 33 chr1 124405356 124405477 -118258876 - MIR SINE MIR -56 206 84 946 186 0 0 chr1 124405528 124405684 -118258669 + FAM SINE Alu 10 165 -20 778 246 101 62 chr1 124405872 124405940 -118258413 - L1ME4a LINE L1 -153 5968 5904 1831 151 0 53 chr1 124405940 124406258 -118258095 - AluJb SINE Alu -11 301 1 778 246 101 62 chr1 124406258 124406644 -118257709 - L1ME4a LINE L1 -217 5904 5496 209 280 0 0 chr1 124406743 124406793 -118257560 + (TG)n Simple_repeat Simple_repeat 2 51 0 341 242 48 16 chr1 124408124 124408248 -118256105 + MIR3 SINE MIR 14 141 -67 5803 199 69 15 chr1 124408415 124409348 -118255005 - Charlie1a DNA MER1_type -1319 1442 410 252 0 0 0 chr1 124409348 124409376 -118254977 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5803 199 69 15 chr1 124409376 124409810 -118254543 - Charlie1a DNA MER1_type -2351 410 1 588 250 98 43 chr1 124410387 124410643 -118253710 + MER102a DNA MER1_type 61 330 0 1215 123 0 12 chr1 124410970 124411141 -118253212 + FRAM SINE Alu 1 164 -12 405 133 0 0 chr1 124411980 124412055 -118252298 + (TCCCC)n Simple_repeat Simple_repeat 2 76 0 226 293 244 6 chr1 124412063 124412227 -118252126 + L2 LINE L2 2554 2756 -558 587 228 82 44 chr1 124412240 124412446 -118251907 + L1ME3A LINE L1 5952 6165 -5 196 229 82 0 chr1 124413337 124413398 -118250955 + L2 LINE L2 3198 3263 -9 309 271 82 0 chr1 124413911 124413996 -118250357 - MLT1L LTR MaLR -8 607 516 2281 125 0 0 chr1 124413997 124414302 -118250051 + AluSx SINE Alu 1 305 -7 1234 77 0 0 chr1 124414369 124414512 -118249841 - AluSq/x SINE Alu -169 143 1 225 0 0 0 chr1 124415326 124415351 -118249002 + (CA)n Simple_repeat Simple_repeat 2 26 0 239 289 13 0 chr1 124416267 124416343 -118248010 + L2 LINE L2 3237 3313 0 1561 224 20 6 chr1 124416661 124417013 -118247340 - Zaphod DNA AcHobo -80 3951 3595 * 1976 226 70 86 chr1 124417011 124417335 -118247018 - Zaphod DNA AcHobo -3041 990 662 855 169 185 0 chr1 124417335 124417519 -118246834 + MER20 DNA MER1_type 2 219 0 360 0 0 0 chr1 124417522 124417562 -118246791 + (CA)n Simple_repeat Simple_repeat 2 41 0 1976 226 70 86 chr1 124417562 124417657 -118246696 - Zaphod DNA AcHobo -3371 660 565 324 0 0 0 chr1 124417657 124417693 -118246660 + (CA)n Simple_repeat Simple_repeat 2 37 0 1976 226 70 86 chr1 124417693 124418237 -118246116 - Zaphod DNA AcHobo -3466 565 37 390 258 66 34 chr1 124418885 124419066 -118245287 - MIR SINE MIR -44 218 33 288 0 0 0 chr1 124419812 124419844 -118244509 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 3700 257 142 12 chr1 124419845 124421200 -118243153 - L2 LINE L2 -14 3299 1652 2194 95 0 63 chr1 124421200 124421517 -118242836 - AluSg SINE Alu -13 297 1 3700 257 142 12 chr1 124421517 124421886 -118242467 - L2 LINE L2 -1661 1652 1332 1856 174 3 7 chr1 124422029 124422339 -118242014 - AluJo SINE Alu -3 309 1 992 251 83 52 chr1 124422369 124423023 -118241330 - L1ME4a LINE L1 -2 6119 5409 234 243 46 26 chr1 124423739 124423769 -118240584 + (CA)n Simple_repeat Simple_repeat 1 29 -126 189 107 0 0 chr1 124423769 124423797 -118240556 + (CCA)n Simple_repeat Simple_repeat 2 29 0 234 243 46 26 chr1 124423797 124423918 -118240435 + (CA)n Simple_repeat Simple_repeat 29 155 0 358 201 44 31 chr1 124423961 124424168 -118240185 + (CA)n Simple_repeat Simple_repeat 1 209 0 374 252 243 9 chr1 124425145 124425355 -118238998 + MIR SINE MIR 4 262 0 28 0 0 0 chr1 124426624 124426652 -118237701 + AT_rich Low_complexity Low_complexity 1 28 0 359 346 0 20 chr1 124427576 124427729 -118236624 + MER5A DNA MER1_type 1 150 -39 290 234 104 13 chr1 124427853 124427930 -118236423 - MER63 DNA MER1_type 0 1062 979 413 176 0 77 chr1 124427930 124428021 -118236332 - MER63 DNA MER1_type -310 752 43 189 107 0 0 chr1 124428449 124428477 -118235876 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 278 344 78 0 chr1 124428515 124428643 -118235710 - MIR3 SINE MIR -45 163 26 181 290 81 0 chr1 124429880 124429942 -118234411 + L3 LINE CR1 460 526 -1051 1226 244 166 19 chr1 124430098 124430573 -118233780 + LTR67 LTR ERVL 3 547 -10 214 290 112 9 chr1 124430578 124430685 -118233668 + L2 LINE L2 3155 3272 0 330 278 22 0 chr1 124431131 124431221 -118233132 + L3 LINE CR1 435 526 -1051 500 238 197 81 chr1 124431226 124431640 -118232713 + MLT1J1 LTR MaLR 3 404 -46 559 319 97 4 chr1 124431687 124431913 -118232440 + L3 LINE CR1 530 776 -801 * 584 294 158 5 chr1 124431912 124432133 -118232220 - MIR SINE MIR 0 262 8 453 241 15 66 chr1 124432133 124432270 -118232083 - MER94 DNA DNA 0 134 5 1527 281 44 16 chr1 124432396 124433015 -118231338 + L3 LINE CR1 940 1575 -2 292 164 0 0 chr1 124433482 124433537 -118230816 - L2 LINE L2 -34 3238 3184 632 209 11 71 chr1 124433548 124433730 -118230623 - MLT1K LTR MaLR -15 573 403 322 298 29 29 chr1 124433851 124433955 -118230398 + L3 LINE CR1 530 633 -944 248 279 112 62 chr1 124434055 124434234 -118230119 - MLT1K LTR MaLR -317 271 84 408 286 64 26 chr1 124434387 124434621 -118229732 - L2 LINE L2 -177 3095 2853 556 311 31 16 chr1 124435167 124435360 -118228993 + MIR SINE MIR 23 218 -44 619 265 215 13 chr1 124435483 124435979 -118228374 - L2 LINE L2 -51 3262 2659 1412 246 131 52 chr1 124436037 124436534 -118227819 + MLT1F1 LTR MaLR 7 567 0 343 218 0 105 chr1 124436707 124436831 -118227522 + L1ME LINE L1 5566 5676 -490 247 204 0 20 chr1 124436833 124436882 -118227471 - AluJb SINE Alu -115 186 139 220 241 0 0 chr1 124436892 124436950 -118227403 + L2 LINE L2 3108 3165 -148 948 158 61 0 chr1 124436952 124437117 -118227236 - AluJb SINE Alu -18 294 120 180 0 0 0 chr1 124437137 124437157 -118227196 + (TTTTTA)n Simple_repeat Simple_repeat 5 24 0 2616 79 0 0 chr1 124437160 124437500 -118226853 - L1PB1 LINE L1 0 6151 5812 576 164 17 0 chr1 124437530 124437707 -118226646 + (TA)n Simple_repeat Simple_repeat 1 180 0 273 162 27 14 chr1 124437706 124437780 -118226573 + (CA)n Simple_repeat Simple_repeat 2 76 0 * 2434 81 0 0 chr1 124437786 124438082 -118226271 - AluSg SINE Alu -14 296 1 3455 72 43 0 chr1 124438082 124438568 -118225785 - L1PB1 LINE L1 -367 5784 5278 863 191 0 0 chr1 124438568 124438709 -118225644 - AluJb SINE Alu -171 141 1 397 219 80 29 chr1 124438710 124438847 -118225506 + L2 LINE L2 3158 3301 -12 1858 164 7 16 chr1 124439439 124439743 -118224610 - AluJb SINE Alu -11 301 1 2057 131 3 0 chr1 124439754 124440044 -118224309 - AluSx SINE Alu -21 291 1 204 289 200 0 chr1 124440186 124440276 -118224077 - MER91A DNA MER1_type -1 195 88 312 293 24 0 chr1 124440314 124440396 -118223957 - MER91A DNA MER1_type -111 85 2 212 178 0 22 chr1 124442441 124442486 -118221867 + T-rich Low_complexity Low_complexity 2 45 0 2050 178 93 30 chr1 124442490 124442950 -118221403 - L1MB2 LINE L1 -1 6170 5682 384 267 23 23 chr1 124443992 124444123 -118220230 + MIR SINE MIR 14 144 -118 823 296 52 34 chr1 124444200 124444524 -118219829 + MLT1K LTR MaLR 97 426 -162 244 296 57 57 chr1 124445020 124445196 -118219157 - MIR3 SINE MIR -3 205 30 582 15 0 0 chr1 124445297 124445364 -118218989 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 417 266 13 46 chr1 124445955 124446178 -118218175 + CT-rich Low_complexity Low_complexity 1 215 0 452 289 22 21 chr1 124447362 124447523 -118216830 + MIR SINE MIR 97 257 -5 7403 116 13 6 chr1 124447769 124448655 -118215698 + L1MA2 LINE L1 4359 5238 -1066 1989 122 79 20 chr1 124448655 124449009 -118215344 + THE1C LTR MaLR 1 375 0 7403 116 13 6 chr1 124449009 124450056 -118214297 + L1MA2 LINE L1 5238 6304 0 205 244 0 0 chr1 124451558 124451603 -118212750 + C-rich Low_complexity Low_complexity 4 48 0 329 291 127 0 chr1 124451675 124451809 -118212544 - MIR3 SINE MIR -21 187 37 294 339 8 15 chr1 124451872 124452002 -118212351 + MER5A DNA MER1_type 1 129 -60 486 273 75 6 chr1 124452319 124452480 -118211873 + MIR SINE MIR 18 189 -73 729 100 0 0 chr1 124454155 124454255 -118210098 - AluSg/x SINE Alu -18 292 193 754 52 0 0 chr1 124454667 124454763 -118209590 + L1PA5 LINE L1 1 96 -6050 38883 45 1 1 chr1 124454763 124460289 -118204064 + L1PA5 LINE L1 623 6150 -4 976 212 10 0 chr1 124460405 124460598 -118203755 - MIR SINE MIR -64 198 4 2050 171 7 68 chr1 124460815 124461230 -118203123 + MLT1B LTR MaLR 1 390 0 277 320 10 10 chr1 124461531 124461634 -118202719 + MIR SINE MIR 47 149 -113 222 268 99 14 chr1 124462540 124462611 -118201742 - L2 LINE L2 -38 3234 3158 412 273 188 0 chr1 124462624 124462752 -118201601 - MER5A DNA MER1_type -3 186 35 291 190 106 155 chr1 124462810 124462952 -118201401 + MER5B DNA MER1_type 44 178 0 1929 182 124 45 chr1 124462972 124463440 -118200913 - MLT1D LTR MaLR 0 505 1 781 163 0 23 chr1 124463630 124463759 -118200594 - MER63 DNA MER1_type -84 752 1 469 246 246 0 chr1 124463900 124464042 -118200311 - MER5A DNA MER1_type 0 189 13 1398 274 68 32 chr1 124464089 124464138 -118200215 + Charlie7 DNA MER1_type 44 90 -2522 525 208 83 36 chr1 124464138 124464306 -118200047 - MER104 DNA MER2_type 0 180 5 1398 274 68 32 chr1 124464306 124464844 -118199509 + Charlie7 DNA MER1_type 90 652 -1960 240 193 0 53 chr1 124464871 124464928 -118199425 + Charlie7 DNA MER1_type 2509 2562 -50 22 0 0 0 chr1 124466211 124466233 -118198120 + AT_rich Low_complexity Low_complexity 1 22 0 345 262 125 109 chr1 124466245 124466501 -118197852 + L2 LINE L2 3004 3263 -9 734 248 15 30 chr1 124467145 124467343 -118197010 + L3 LINE CR1 1295 1489 -88 369 278 0 0 chr1 124518084 124518174 -118146179 + L1MC4 LINE L1 6614 6703 -1339 323 287 23 0 chr1 124518096 124518183 -118146170 - L1MC4 LINE L1 -1339 6703 6615 * 249 33 0 0 chr1 124518184 124518214 -118146139 + (TG)n Simple_repeat Simple_repeat 2 31 0 1648 201 0 7 chr1 124518220 124518509 -118145844 - AluJo SINE Alu -24 288 2 845 148 172 19 chr1 124518547 124518803 -118145550 - Charlie2a DNA MER1_type -1835 1027 733 700 280 152 0 chr1 124518801 124519051 -118145302 - Charlie2a DNA MER1_type -2308 474 187 * 31 68 0 0 chr1 124519163 124519222 -118145131 + AT_rich Low_complexity Low_complexity 1 59 0 343 281 91 16 chr1 124519258 124519379 -118144974 + L2 LINE L2 3143 3272 0 234 226 0 19 chr1 124519420 124519473 -118144880 - MER5B DNA MER1_type -126 52 1 442 259 76 32 chr1 124519593 124519751 -118144602 - LTR67 LTR ERVL -20 537 373 1055 188 0 6 chr1 124520095 124520276 -118144077 - AluJb SINE Alu -4 308 129 257 385 83 19 chr1 124521584 124521740 -118142613 - L2 LINE L2 -8 3264 3099 427 250 10 0 chr1 124521919 124522015 -118142338 - L2 LINE L2 0 3313 3217 544 214 8 8 chr1 124522489 124522606 -118141747 - FLAM_A SINE Alu -15 127 11 2035 130 0 0 chr1 124522629 124522935 -118141418 - AluSx SINE Alu 0 306 1 4226 165 55 35 chr1 124523754 124524155 -118140198 - L1MB5 LINE L1 -6 6168 5777 2065 146 0 0 chr1 124524155 124524457 -118139896 - AluSx SINE Alu 0 312 11 4226 165 55 35 chr1 124524457 124525373 -118138980 - L1MB5 LINE L1 -397 5777 4832 584 137 11 0 chr1 124525415 124525534 -118138819 - FLAM_C SINE Alu 0 142 23 765 213 92 0 chr1 124526051 124526225 -118138128 - MER63A DNA MER1_type -20 190 1 387 209 98 20 chr1 124526405 124526543 -118137810 - MLT2F LTR ERVL -2 661 255 188 222 42 56 chr1 124526583 124526655 -118137698 + L2 LINE L2 1605 1675 -1639 222 286 0 0 chr1 124526670 124526740 -118137613 - L2 LINE L2 -1545 1769 1700 262 310 18 26 chr1 124526779 124526892 -118137461 + L2 LINE L2 1792 1903 -1411 337 203 28 65 chr1 124526982 124527100 -118137253 + MLT1J LTR MaLR 110 285 -303 462 324 89 23 chr1 124527868 124528127 -118136226 + L2 LINE L2 1894 2169 -1145 589 297 71 53 chr1 124528340 124528677 -118135676 + MLT1J LTR MaLR 100 442 -69 427 289 80 25 chr1 124528762 124528963 -118135390 + L2 LINE L2 2480 2691 -623 2356 232 36 7 chr1 124528983 124529591 -118134762 + L1MD2 LINE L1 3958 4583 -1563 639 131 0 10 chr1 124529591 124529690 -118134663 + MER4A LTR ERV1 1 98 -566 261 139 23 0 chr1 124529685 124529728 -118134625 + MER4A LTR ERV1 256 299 -365 * 2478 174 15 2 chr1 124529829 124530294 -118134059 - MSTA-int LTR MaLR -1180 471 1 1234 148 100 9 chr1 124530294 124530523 -118133830 - MSTA LTR MaLR 0 428 179 594 144 5 142 chr1 124530628 124530818 -118133535 + MER4A LTR ERV1 274 495 -169 994 66 0 0 chr1 124530818 124530940 -118133413 + MER11B LTR ERVK 1 122 -1114 257 271 14 0 chr1 124531063 124531133 -118133220 - MIR SINE MIR -107 155 85 6507 101 4 21 chr1 124531191 124532144 -118132209 + MER11C LTR ERVK 121 1057 -14 1220 133 0 11 chr1 124532180 124532360 -118131993 + MER4A LTR ERV1 487 664 0 4823 202 42 34 chr1 124532360 124534141 -118130212 + L1MD2 LINE L1 4580 6359 0 609 335 74 6 chr1 124534160 124534497 -118129856 + L2 LINE L2 2702 3058 -255 28 29 0 0 chr1 124534512 124534547 -118129806 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 124534599 124534622 -118129731 + AT_rich Low_complexity Low_complexity 1 23 0 2178 108 0 0 chr1 124534794 124535123 -118129230 + AluSc SINE Alu 1 329 0 29 47 0 0 chr1 124535159 124535202 -118129151 + AT_rich Low_complexity Low_complexity 1 43 0 581 135 0 0 chr1 124535710 124535799 -118128554 + AluSg SINE Alu 1 89 -221 1708 148 7 39 chr1 124536165 124536470 -118127883 - AluJo SINE Alu 0 312 18 1551 181 7 17 chr1 124536489 124536776 -118127577 - AluSx SINE Alu -17 295 12 13273 86 16 12 chr1 124537223 124539198 -118125155 - MER61-int LTR ERV1 -1870 3347 1320 3987 123 90 37 chr1 124539192 124539929 -118124424 - MER61-int LTR ERV1 -4441 776 1 * 2077 116 36 15 chr1 124539929 124540265 -118124088 - MER61A LTR ERV1 0 343 1 4543 141 19 1 chr1 124540265 124540965 -118123388 - MER50-int LTR ERV1 -6490 715 4 3103 149 25 13 chr1 124541009 124541531 -118122822 - MER50 LTR ERV1 -25 709 182 6941 125 49 18 chr1 124542864 124544056 -118120297 - Tigger3b DNA MER2_type -1 1230 2 22 0 0 0 chr1 124546554 124546576 -118117777 + AT_rich Low_complexity Low_complexity 1 22 0 1410 180 83 18 chr1 124547321 124547599 -118116754 - AluJo SINE Alu -16 296 1 367 289 81 34 chr1 124547886 124547955 -118116398 - L3 LINE CR1 -11 1566 1502 1547 216 27 19 chr1 124547955 124548325 -118116028 - MLT1A2 LTR MaLR 0 374 2 367 289 81 34 chr1 124548325 124548404 -118115949 - L3 LINE CR1 -75 1502 1411 2466 226 53 7 chr1 124548997 124549559 -118114794 - MER92B LTR ERV1 -48 588 1 231 264 176 11 chr1 124549749 124549840 -118114513 - L3 LINE CR1 -257 1320 1215 497 240 170 35 chr1 124550495 124550666 -118113687 - MIR SINE MIR -59 203 10 844 366 82 19 chr1 124550819 124551355 -118112998 - L3 LINE CR1 -745 832 263 186 133 0 0 chr1 124551717 124551747 -118112606 + (T)n Simple_repeat Simple_repeat 1 30 0 1359 148 30 22 chr1 124551757 124551987 -118112366 - AluJb SINE Alu -14 298 67 23 54 0 0 chr1 124553691 124553728 -118110625 + AT_rich Low_complexity Low_complexity 1 37 0 1604 146 4 0 chr1 124553801 124554047 -118110306 - AluJb SINE Alu 0 312 66 1994 86 31 57 chr1 124554133 124554310 -118110043 + L1MA3 LINE L1 5966 6131 -174 1656 171 17 7 chr1 124554310 124554602 -118109751 + AluJo SINE Alu 7 301 -11 1994 86 31 57 chr1 124554602 124554773 -118109580 + L1MA3 LINE L1 6131 6305 0 3496 259 104 57 chr1 124556247 124557820 -118106533 + L2 LINE L2 1620 3271 -42 200 301 55 27 chr1 124557881 124557954 -118106399 + MIR SINE MIR 48 122 -140 2367 96 0 3 chr1 124557978 124558290 -118106063 - AluSq SINE Alu -2 311 1 631 282 10 20 chr1 124558320 124558515 -118105838 + MIR SINE MIR 67 259 -3 1967 116 0 41 chr1 124559272 124559595 -118104758 + AluSp SINE Alu 1 311 0 22 70 0 0 chr1 124559798 124559841 -118104512 + AT_rich Low_complexity Low_complexity 1 43 0 221 257 135 14 chr1 124560306 124560380 -118103973 + MIR3 SINE MIR 113 195 -13 366 324 128 45 chr1 124560573 124560927 -118103426 + L2 LINE L2 2430 2840 -474 2024 128 6 10 chr1 124560927 124561239 -118103114 - AluSx SINE Alu -1 311 1 366 324 128 45 chr1 124561239 124561390 -118102963 + L2 LINE L2 2840 2977 -337 237 130 52 43 chr1 124561392 124561507 -118102846 + CT-rich Low_complexity Low_complexity 3 118 0 1589 134 47 22 chr1 124561509 124561784 -118102569 - AluJo SINE Alu -27 285 4 26 0 0 0 chr1 124563434 124563460 -118100893 + AT_rich Low_complexity Low_complexity 1 26 0 22 25 0 25 chr1 124564122 124564147 -118100206 + AT_rich Low_complexity Low_complexity 1 26 -13 761 153 0 29 chr1 124564147 124564284 -118100069 + AluJo SINE Alu 1 133 -169 22 25 0 25 chr1 124564284 124564298 -118100055 + AT_rich Low_complexity Low_complexity 26 39 0 973 158 5 71 chr1 124564323 124564548 -118099805 + AluJo SINE Alu 130 341 0 25 51 0 0 chr1 124565320 124565359 -118098994 + AT_rich Low_complexity Low_complexity 1 39 0 2157 115 0 3 chr1 124566436 124566741 -118097612 - AluSg SINE Alu -6 304 1 25 83 0 0 chr1 124567975 124568035 -118096318 + AT_rich Low_complexity Low_complexity 1 60 0 390 272 188 49 chr1 124568877 124569101 -118095252 + MIR SINE MIR 5 259 -3 2159 125 0 3 chr1 124569143 124569455 -118094898 - AluSq SINE Alu -2 311 1 2121 91 34 7 chr1 124569693 124569991 -118094362 - AluSc SINE Alu -2 307 2 344 194 161 21 chr1 124570240 124570333 -118094020 - L2 LINE L2 0 3313 3208 3921 54 4 15 chr1 124570343 124570626 -118093727 - L1P3 LINE L1 -371 5801 5525 2217 93 0 3 chr1 124570626 124570917 -118093436 + AluSc SINE Alu 1 290 -19 3921 54 4 15 chr1 124570917 124571153 -118093200 - L1P3 LINE L1 -647 5525 5288 2797 40 20 0 chr1 124571153 124571497 -118092856 + L1PA8 LINE L1 5816 6169 -3 563 267 226 19 chr1 124571497 124571767 -118092586 - L2 LINE L2 -108 3205 2880 1746 168 6 25 chr1 124571826 124572141 -118092212 - AluJb SINE Alu -3 309 1 1029 83 39 0 chr1 124572190 124572359 -118091994 - L1PA3 LINE L1 0 6168 6013 477 227 76 107 chr1 124572666 124572948 -118091405 - L1ME LINE L1 -5422 661 375 10893 190 32 31 chr1 124572967 124575474 -118088879 - L1MC1 LINE L1 -88 6525 4021 1691 171 0 58 chr1 124575474 124575801 -118088552 - AluJo SINE Alu -4 308 1 10893 190 32 31 chr1 124575801 124576923 -118087430 - L1MC1 LINE L1 -2592 4021 2901 1405 132 25 34 chr1 124576923 124577158 -118087195 + MER46A DNA MER2_type 1 233 -3 10893 190 32 31 chr1 124577158 124577357 -118086996 - L1MC1 LINE L1 -3712 2901 2692 1923 168 3 0 chr1 124577357 124577667 -118086686 - AluJo SINE Alu -1 311 1 10893 190 32 31 chr1 124577667 124577754 -118086599 - L1MC1 LINE L1 -3921 2692 2607 648 216 8 119 chr1 124577754 124578022 -118086331 - L1 LINE L1 -757 5389 5152 9924 144 106 69 chr1 124578043 124578517 -118085836 - L1MC1 LINE L1 -3822 2604 2149 2002 151 3 0 chr1 124578517 124578822 -118085531 - AluSq SINE Alu -7 306 1 9924 144 106 69 chr1 124578822 124578915 -118085438 - L1MC1 LINE L1 -4277 2149 2061 2038 129 0 40 chr1 124578915 124579240 -118085113 - AluSx SINE Alu 0 312 1 9924 144 106 69 chr1 124579240 124579361 -118084992 - L1MC1 LINE L1 -4365 2061 1946 858 142 0 22 chr1 124579361 124579495 -118084858 - FLAM_C SINE Alu -1 132 2 9924 144 106 69 chr1 124579495 124580179 -118084174 - L1MC1 LINE L1 -4480 1946 1289 630 230 0 0 chr1 124580179 124580305 -118084048 - FLAM_A SINE Alu -4 129 4 9924 144 106 69 chr1 124580305 124581110 -118083243 - L1MC1 LINE L1 -5137 1289 319 1638 167 94 0 chr1 124581110 124581386 -118082967 - AluSx SINE Alu -10 302 1 9924 144 106 69 chr1 124581386 124581701 -118082652 - L1MC1 LINE L1 -6107 319 17 22 56 0 0 chr1 124581818 124581854 -118082499 + AT_rich Low_complexity Low_complexity 1 36 0 484 322 176 25 chr1 124582227 124582529 -118081824 + L2 LINE L2 2812 3067 -246 261 0 0 0 chr1 124582529 124582558 -118081795 + (TG)n Simple_repeat Simple_repeat 2 30 0 484 322 176 25 chr1 124582558 124582607 -118081746 + L2 LINE L2 3067 3107 -206 2321 65 10 0 chr1 124582607 124582913 -118081440 - AluY SINE Alu -2 309 1 484 322 176 25 chr1 124582913 124582992 -118081361 + L2 LINE L2 3107 3308 -5 236 179 63 84 chr1 124583068 124583163 -118081190 - L2 LINE L2 -103 3210 3118 24 32 0 0 chr1 124584276 124584307 -118080046 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 124584857 124584879 -118079474 + AT_rich Low_complexity Low_complexity 1 22 0 374 233 60 67 chr1 124584914 124585064 -118079289 - HAL1 LINE L1 -1683 824 676 23 68 0 0 chr1 124585403 124585447 -118078906 + AT_rich Low_complexity Low_complexity 1 44 0 431 183 0 106 chr1 124585786 124585890 -118078463 + L2 LINE L2 3197 3289 -24 2113 120 3 0 chr1 124585904 124586196 -118078157 - AluSx SINE Alu -18 294 2 237 322 116 8 chr1 124586888 124587009 -118077344 + L2 LINE L2 3138 3271 -1 278 264 80 12 chr1 124587138 124587301 -118077052 - L1MEd LINE L1 -5050 1069 896 1039 159 0 87 chr1 124587447 124587699 -118076654 - L1MB3 LINE L1 -1 6182 5953 715 79 79 24 chr1 124588360 124588415 -118075938 - L1MA4A LINE L1 -470 5833 5782 387 0 0 0 chr1 124588415 124588458 -118075895 + (CA)n Simple_repeat Simple_repeat 2 44 0 715 79 79 24 chr1 124588458 124588529 -118075824 - L1MA4A LINE L1 -521 5782 5700 594 328 121 25 chr1 124588577 124588864 -118075489 - L1MEc LINE L1 -4566 1744 1486 693 0 0 0 chr1 124588864 124588941 -118075412 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1567 149 98 0 chr1 124588941 124589196 -118075157 - AluJo SINE Alu -32 280 1 594 328 121 25 chr1 124589196 124589434 -118074919 - L1MEc LINE L1 -4823 1487 1167 840 126 0 0 chr1 124589469 124589580 -118074773 + FRAM SINE Alu 37 147 -29 311 0 0 25 chr1 124589580 124589620 -118074733 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 822 352 52 38 chr1 124589657 124590270 -118074083 - L1MEc LINE L1 -5017 1102 481 372 291 80 76 chr1 124590298 124590573 -118073780 - L1MEc LINE L1 -5778 341 66 742 316 70 8 chr1 124590709 124591066 -118073287 - L1MEd LINE L1 -5291 828 450 2089 85 0 0 chr1 124591125 124591385 -118072968 - AluSc SINE Alu -49 260 1 402 307 56 56 chr1 124592027 124592242 -118072111 - MIR SINE MIR 0 262 48 194 307 0 27 chr1 124592265 124592340 -118072013 + MIR SINE MIR 163 235 -27 349 194 117 29 chr1 124592602 124592705 -118071648 - L1ME LINE L1 -301 5820 5709 187 231 0 39 chr1 124593067 124593119 -118071234 - L2 LINE L2 -2 3311 3262 23 0 0 0 chr1 124593705 124593728 -118070625 + AT_rich Low_complexity Low_complexity 1 23 0 236 129 0 86 chr1 124594134 124594204 -118070149 + (TTAA)n Simple_repeat Simple_repeat 1 64 0 190 333 0 13 chr1 124594588 124594663 -118069690 - MIR SINE MIR -111 151 78 33 88 0 22 chr1 124595691 124595827 -118068526 + AT_rich Low_complexity Low_complexity 1 133 0 7085 51 2 0 chr1 124596110 124597276 -118067077 - L1PA6 LINE L1 -11 6143 4975 239 235 15 0 chr1 124597642 124597710 -118066643 + Charlie7 DNA MER1_type 33 101 -2511 242 278 19 0 chr1 124597744 124597852 -118066501 + (TA)n Simple_repeat Simple_repeat 2 111 0 226 385 10 0 chr1 124598705 124598809 -118065544 + L2 LINE L2 2616 2720 -594 356 225 36 51 chr1 124599213 124599351 -118065002 - L2 LINE L2 -65 3248 3113 2267 235 245 30 chr1 124599353 124600573 -118063780 - L1M2b LINE L1 -5739 1470 1 308 233 33 0 chr1 124600645 124600795 -118063558 + (TCTCTG)n Simple_repeat Simple_repeat 2 156 0 736 254 13 54 chr1 124603338 124603562 -118060791 - MER58C DNA MER1_type 0 215 1 222 376 43 11 chr1 124603748 124603841 -118060512 + L2 LINE L2 2978 3073 -199 356 244 12 12 chr1 124603934 124604020 -118060333 + L2 LINE L2 3187 3272 0 * 384 257 44 18 chr1 124604012 124604125 -118060228 + L2 LINE L2 3194 3309 -4 1555 182 44 7 chr1 124604205 124604501 -118059852 - MER61A LTR ERV1 -28 315 9 26128 86 38 11 chr1 124604514 124607683 -118056670 - MER61A-int LTR ERV1 0 5217 1929 2188 119 0 0 chr1 124607683 124607976 -118056377 - AluSx SINE Alu -19 293 1 26128 86 38 11 chr1 124607976 124608526 -118055827 - MER61A-int LTR ERV1 -3288 1929 1396 2095 113 13 0 chr1 124608535 124608846 -118055507 - MER61A-int LTR ERV1 -3945 1272 958 4184 137 17 86 chr1 124608846 124609727 -118054626 - MER61A-int LTR ERV1 -4377 840 21 1329 209 42 16 chr1 124609755 124610062 -118054291 - MER61A LTR ERV1 -28 315 1 651 285 12 6 chr1 124610087 124610259 -118054094 + MIR SINE MIR 28 200 -62 363 327 20 112 chr1 124610258 124610293 -118054060 - L2 LINE L2 0 3272 3235 * 1979 138 7 3 chr1 124610293 124610589 -118053764 + AluSx SINE Alu 1 297 -15 363 327 20 112 chr1 124610589 124610856 -118053497 - L2 LINE L2 -37 3235 2998 538 304 102 38 chr1 124610902 124611215 -118053138 - L2 LINE L2 -438 2876 2544 1805 221 11 36 chr1 124611217 124611503 -118052850 - L1ME LINE L1 -1227 4853 4586 2498 75 0 0 chr1 124611503 124611811 -118052542 - AluY SINE Alu -3 308 1 1805 221 11 36 chr1 124611811 124612075 -118052278 - L1ME LINE L1 -1494 4586 4317 1958 229 63 8 chr1 124612085 124612608 -118051745 - L1ME LINE L1 -1973 4107 3556 1495 161 24 4 chr1 124612609 124613003 -118051350 - LTR47A LTR ERVL 0 452 1 4223 248 71 16 chr1 124613003 124613352 -118051001 - L1ME LINE L1 -2521 3559 3230 2149 132 0 3 chr1 124613352 124613662 -118050691 - AluSx SINE Alu -3 309 1 4223 248 71 16 chr1 124613662 124614978 -118049375 - L1ME LINE L1 -2850 3230 1806 2119 58 0 0 chr1 124614978 124615236 -118049117 - AluY SINE Alu -13 298 41 4223 248 71 16 chr1 124615236 124615667 -118048686 - L1ME LINE L1 -4274 1806 1400 1640 252 113 40 chr1 124615684 124616706 -118047647 - L1ME LINE L1 -4792 1288 229 256 208 48 64 chr1 124616844 124616890 -118047463 - L1ME LINE L1 -5919 151 106 342 0 0 0 chr1 124616890 124616928 -118047425 + (CA)n Simple_repeat Simple_repeat 2 39 0 256 208 48 64 chr1 124616928 124617006 -118047347 - L1ME LINE L1 -5964 106 29 181 297 99 11 chr1 124617032 124617123 -118047230 + MIR SINE MIR 116 214 -48 219 413 8 0 chr1 124617218 124617344 -118047009 + L2 LINE L2 2596 2722 -592 710 226 75 6 chr1 124618160 124618319 -118046034 - FAM SINE Alu -5 170 1 35 24 0 0 chr1 124619030 124619072 -118045281 + AT_rich Low_complexity Low_complexity 1 42 0 379 39 19 0 chr1 124619949 124620001 -118044352 - L1PA6 LINE L1 -3 6151 6099 585 217 47 57 chr1 124620214 124620426 -118043927 - L1MC5 LINE L1 -47 7914 7705 234 246 87 14 chr1 124620563 124620632 -118043721 + MIR3 SINE MIR 114 187 -21 22 0 0 0 chr1 124621586 124621608 -118042745 + AT_rich Low_complexity Low_complexity 1 22 0 29 78 0 0 chr1 124621682 124621746 -118042607 + AT_rich Low_complexity Low_complexity 1 64 0 27 49 0 0 chr1 124621794 124621835 -118042518 + AT_rich Low_complexity Low_complexity 1 41 0 252 189 0 0 chr1 124622450 124622524 -118041829 + A-rich Low_complexity Low_complexity 1 74 0 257 277 70 16 chr1 124623508 124623750 -118040603 - L1ME4a LINE L1 -206 5915 5661 319 346 83 38 chr1 124623785 124624074 -118040279 - L1ME4a LINE L1 -546 5575 5274 15658 149 26 13 chr1 124624250 124628789 -118035564 - L1MA3 LINE L1 0 7724 3101 1803 89 114 11 chr1 124628789 124629060 -118035293 + AluSg SINE Alu 1 299 -11 15658 149 26 13 chr1 124629060 124629701 -118034652 - L1MA3 LINE L1 -4623 3101 2470 1935 177 106 0 chr1 124629710 124630088 -118034265 - MSTA LTR MaLR -10 418 1 2286 137 68 0 chr1 124630103 124630484 -118033869 - MSTA-int LTR MaLR -16 1635 1229 351 324 60 50 chr1 124630484 124630802 -118033551 - L1M4 LINE L1 -3094 3052 2732 382 103 69 0 chr1 124631428 124631486 -118032867 - L2 LINE L2 -1 3312 3251 408 313 114 11 chr1 124631627 124631803 -118032550 - MLT1K LTR MaLR -308 280 87 254 354 35 90 chr1 124631862 124632150 -118032203 - L2 LINE L2 -183 3089 2818 352 324 147 0 chr1 124632335 124632505 -118031848 - MIR SINE MIR -12 250 56 394 223 29 29 chr1 124632992 124633095 -118031258 + MIR SINE MIR 101 203 -59 670 122 35 0 chr1 124633235 124633350 -118031003 - L1MA7 LINE L1 -5 6286 6168 21 0 0 0 chr1 124633354 124633375 -118030978 + AT_rich Low_complexity Low_complexity 1 21 0 567 223 0 0 chr1 124633386 124633489 -118030864 + FRAM SINE Alu 1 103 -73 25 0 0 0 chr1 124633866 124633891 -118030462 + AT_rich Low_complexity Low_complexity 1 25 0 205 281 56 6 chr1 124634261 124634350 -118030003 - MER5B DNA MER1_type -88 101 2 227 271 140 0 chr1 124634376 124634483 -118029870 + L2 LINE L2 3192 3313 0 31 58 0 0 chr1 124634549 124634601 -118029752 + AT_rich Low_complexity Low_complexity 1 52 0 334 277 199 0 chr1 124634641 124634782 -118029571 + L1ME LINE L1 5595 5763 -407 * 8244 249 85 40 chr1 124634751 124635224 -118029129 + L1M3 LINE L1 1397 1847 -5119 1888 159 0 7 chr1 124635224 124635519 -118028834 - AluJb SINE Alu -19 293 1 8244 249 85 40 chr1 124635519 124636246 -118028107 + L1M3 LINE L1 1847 2540 -4426 1980 185 14 8 chr1 124636246 124636609 -118027744 - MLT1A1 LTR MaLR 0 365 1 8244 249 85 40 chr1 124636609 124639802 -118024551 + L1M3 LINE L1 2540 6155 -811 40351 67 7 3 chr1 124639838 124646010 -118018343 + L1PA5 LINE L1 12 6154 0 395 271 8 0 chr1 124646009 124646127 -118018226 - L1M4 LINE L1 -2509 3637 3519 * 2596 165 30 13 chr1 124646135 124646607 -118017746 + L1M3 LINE L1 6127 6606 -388 2353 218 39 9 chr1 124646620 124647188 -118017165 + L1ME2 LINE L1 5569 6153 -11 244 239 23 11 chr1 124647398 124647486 -118016867 - L1M4 LINE L1 -2834 3312 3224 1986 138 3 3 chr1 124647494 124647791 -118016562 - AluSx SINE Alu -13 299 3 844 256 92 89 chr1 124647796 124648419 -118015934 - L1M4 LINE L1 -3070 3076 2448 1239 193 17 21 chr1 124648419 124648658 -118015695 + MER8 DNA MER2_type 2 239 0 844 256 92 89 chr1 124648658 124648945 -118015408 - L1M4 LINE L1 -3698 2448 2163 1284 175 212 0 chr1 124649105 124649397 -118014956 + MER46B DNA MER2_type 7 235 -1 285 347 88 6 chr1 124649400 124649740 -118014613 + L1ME3A LINE L1 1582 1949 -4591 331 310 70 0 chr1 124649801 124649972 -118014381 + L1ME3A LINE L1 5066 5248 -1292 471 288 55 5 chr1 124650003 124650222 -118014131 + L1ME3A LINE L1 5306 5535 -1005 419 306 123 32 chr1 124650412 124650820 -118013533 + L1MA3 LINE L1 5381 5825 -480 * 1256 237 77 19 chr1 124650490 124650921 -118013432 + L1ME3A LINE L1 5483 5938 -232 22 0 0 0 chr1 124652952 124652974 -118011379 + AT_rich Low_complexity Low_complexity 1 22 0 504 178 30 193 chr1 124652975 124653183 -118011170 - L1MC5 LINE L1 -1002 6959 6803 1155 29 0 0 chr1 124653183 124653319 -118011034 - L1PA5 LINE L1 -3 6151 6016 504 178 30 193 chr1 124653319 124653380 -118010973 - L1MC5 LINE L1 -1158 6803 6734 44 20 0 0 chr1 124653569 124653620 -118010733 + AT_rich Low_complexity Low_complexity 1 51 0 223 245 38 0 chr1 124653873 124653926 -118010427 - MIR3 SINE MIR 0 208 154 1883 123 0 31 chr1 124654125 124654448 -118009905 - AluSx SINE Alu 0 314 1 25 31 0 0 chr1 124654792 124654824 -118009529 + AT_rich Low_complexity Low_complexity 1 32 0 2578 33 3 0 chr1 124654942 124655241 -118009112 + AluY SINE Alu 12 311 0 1210 34 0 0 chr1 124655307 124655455 -118008898 - L1PA4 LINE L1 -4 6151 6004 303 368 115 30 chr1 124655614 124655848 -118008505 - MIR SINE MIR 0 262 9 3631 146 15 73 chr1 124656339 124657060 -118007293 - LTR58 LTR ERV1 0 679 1 806 326 96 9 chr1 124657464 124657786 -118006567 + MLT1I LTR MaLR 60 409 0 29 70 0 0 chr1 124657803 124657860 -118006493 + AT_rich Low_complexity Low_complexity 1 57 0 2413 71 0 0 chr1 124658218 124658512 -118005841 - AluY SINE Alu -17 294 1 207 0 0 0 chr1 124658656 124658679 -118005674 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 359 223 81 47 chr1 124658723 124658934 -118005419 - HAL1b LINE L1 -189 1159 942 3929 153 71 52 chr1 124658962 124659797 -118004556 - L1MD1 LINE L1 0 6242 5392 2481 83 20 20 chr1 124659798 124660147 -118004206 - THE1C LTR MaLR 0 375 27 4810 207 70 83 chr1 124660171 124660252 -118004101 - L1MD1 LINE L1 -823 5323 5242 1087 223 55 60 chr1 124660252 124660616 -118003737 - MLT1A1 LTR MaLR -3 362 1 4810 207 70 83 chr1 124660616 124661462 -118002891 - L1MD1 LINE L1 -904 5242 4387 1075 167 27 18 chr1 124661462 124661684 -118002669 - L1MA7 LINE L1 -4 6287 6064 4810 207 70 83 chr1 124661684 124661936 -118002417 - L1MD1 LINE L1 -1759 4387 4133 2112 96 0 0 chr1 124661936 124662267 -118002086 - AluSc SINE Alu 0 331 1 4810 207 70 83 chr1 124662267 124662990 -118001363 - L1MD1 LINE L1 -2013 4133 3453 397 317 21 7 chr1 124663001 124663143 -118001210 + L1M3a LINE L1 37 180 -5775 909 285 62 29 chr1 124664017 124664431 -117999922 + L1M3a LINE L1 246 666 -4368 180 0 0 0 chr1 124664437 124664457 -117999896 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1209 194 23 0 chr1 124664459 124664676 -117999677 - AluJo SINE Alu -18 294 73 5992 150 24 12 chr1 124664694 124665975 -117998378 + L1MA4 LINE L1 5006 6294 -6 619 197 5 62 chr1 124665977 124666027 -117998326 - L1M4 LINE L1 -831 5315 5264 2385 68 0 29 chr1 124666027 124666334 -117998019 + AluY SINE Alu 1 298 -13 619 197 5 62 chr1 124666334 124666476 -117997877 - L1M4 LINE L1 -882 5264 5134 1217 211 8 63 chr1 124666476 124666827 -117997526 - L1M4 LINE L1 -2136 4010 3679 * 6122 91 32 47 chr1 124666826 124667552 -117996801 - L1MA3 LINE L1 0 6305 5597 2310 88 0 3 chr1 124667552 124667849 -117996504 - AluSx SINE Alu -8 304 9 6122 91 32 47 chr1 124667849 124668115 -117996238 - L1MA3 LINE L1 -708 5597 5328 * 7685 213 18 20 chr1 124668102 124669361 -117994992 - L1M4 LINE L1 -2358 3788 2539 2093 108 3 26 chr1 124669361 124669666 -117994687 - AluSq SINE Alu -11 302 5 7685 213 18 20 chr1 124669666 124670773 -117993580 - L1M4 LINE L1 -3607 2539 1431 * 31294 108 13 54 chr1 124670759 124674059 -117990294 - L1PA7 LINE L1 0 6154 3256 2176 129 0 0 chr1 124674059 124674369 -117989984 - AluSx SINE Alu -2 310 1 31294 108 13 54 chr1 124674369 124677495 -117986858 - L1PA7 LINE L1 -2898 3256 2 9514 112 12 7 chr1 124677498 124678907 -117985446 - L1PBa LINE L1 -4782 2081 666 6499 189 36 5 chr1 124678908 124680331 -117984022 - L1 LINE L1 -2087 4059 2593 4472 171 30 19 chr1 124681723 124682654 -117981699 - L1MB2 LINE L1 -8 6163 5221 234 0 0 0 chr1 124682714 124682740 -117981613 + (TG)n Simple_repeat Simple_repeat 2 27 0 307 233 50 8 chr1 124682857 124682977 -117981376 - HAL1b LINE L1 -529 819 695 366 286 30 23 chr1 124684091 124684224 -117980129 - ERVL LTR ERVL -1161 4603 4470 235 267 31 15 chr1 124684645 124684717 -117979636 - MIR SINE MIR -62 146 78 24 0 0 0 chr1 124685463 124685487 -117978866 + AT_rich Low_complexity Low_complexity 1 24 0 251 239 0 0 chr1 124686144 124686190 -117978163 - L2 LINE L2 -22 3250 3205 867 226 18 0 chr1 124686588 124686756 -117977597 + MIR SINE MIR 86 256 -6 187 277 268 1 chr1 124687475 124687577 -117976776 + MIR SINE MIR 8 132 -76 2126 90 3 10 chr1 124688162 124688463 -117975890 - L1PA13 LINE L1 -8 6155 5857 24 0 0 0 chr1 124688922 124688946 -117975407 + AT_rich Low_complexity Low_complexity 1 24 0 721 200 0 0 chr1 124689036 124689156 -117975197 - FLAM_C SINE Alu -23 120 1 6065 206 51 35 chr1 124689720 124690939 -117973414 - L1M4 LINE L1 -4993 1549 299 201 39 0 0 chr1 124690939 124690965 -117973388 + (TTCTG)n Simple_repeat Simple_repeat 5 30 0 6065 206 51 35 chr1 124690965 124691262 -117973091 - L1M4 LINE L1 -6243 299 8 21 36 0 0 chr1 124691278 124691306 -117973047 + AT_rich Low_complexity Low_complexity 1 28 0 1392 188 18 32 chr1 124691308 124691585 -117972768 - AluJo SINE Alu -39 273 1 26 50 0 0 chr1 124692250 124692290 -117972063 + AT_rich Low_complexity Low_complexity 1 40 0 1155 231 115 16 chr1 124693226 124693538 -117970815 - MER2 DNA MER2_type 0 345 3 475 258 113 0 chr1 124693539 124693663 -117970690 - MIR SINE MIR -100 162 25 8636 195 95 40 chr1 124694092 124694765 -117969588 + L1M4c LINE L1 30 665 -5717 1653 196 11 3 chr1 124694765 124695051 -117969302 + AluJo SINE Alu 1 288 -24 8636 195 95 40 chr1 124695051 124696280 -117968073 + L1M4c LINE L1 665 1825 -4557 1497 192 52 21 chr1 124696280 124696590 -117967763 + AluJb SINE Alu 1 312 0 8636 195 95 40 chr1 124696590 124698268 -117966085 + L1M4c LINE L1 1825 3813 -2569 629 237 0 0 chr1 124698269 124698383 -117965970 + MER21B LTR ERV1 328 441 -422 284 271 33 66 chr1 124698398 124698520 -117965833 + MIR SINE MIR 145 262 0 250 218 39 13 chr1 124698539 124698617 -117965736 + L1ME LINE L1 5527 5606 -515 * 7556 214 25 8 chr1 124698611 124700412 -117963941 + L1M4c LINE L1 3799 5629 -753 1092 263 12 4 chr1 124700792 124701043 -117963310 + MIR SINE MIR 10 262 0 3071 155 36 3 chr1 124701092 124701667 -117962686 - L1MB3 LINE L1 -2 6181 5588 241 319 11 11 chr1 124701900 124701994 -117962359 + CT-rich Low_complexity Low_complexity 6 99 0 3433 261 181 23 chr1 124702970 124704717 -117959636 - L2 LINE L2 -3 3310 1283 59 65 0 0 chr1 124705040 124705148 -117959205 + AT_rich Low_complexity Low_complexity 1 108 0 852 265 122 20 chr1 124705222 124705565 -117958788 - MLT1J2 LTR MaLR -72 378 1 608 225 90 45 chr1 124705699 124705921 -117958432 + L2 LINE L2 3081 3312 -1 828 294 121 26 chr1 124707065 124707528 -117956825 - L2 LINE L2 -900 2414 1908 3211 149 14 5 chr1 124707930 124709355 -117954998 - L1PB1 LINE L1 -2 6149 4660 512 156 0 0 chr1 124709354 124709450 -117954903 + L1PB1 LINE L1 4570 4665 -1481 * 21 0 0 0 chr1 124709455 124709476 -117954877 + AT_rich Low_complexity Low_complexity 1 21 0 1293 181 163 85 chr1 124709621 124710139 -117954214 - LTR36 LTR ERV1 0 611 1 21 0 0 0 chr1 124710319 124710340 -117954013 + AT_rich Low_complexity Low_complexity 1 21 0 259 403 0 25 chr1 124711234 124711353 -117953000 + MLT1I LTR MaLR 202 317 -92 607 171 0 9 chr1 124711635 124711740 -117952613 + FLAM_A SINE Alu 27 130 -12 656 151 73 189 chr1 124711746 124711911 -117952442 + MER8 DNA MER2_type 11 137 -102 2238 121 0 3 chr1 124711911 124712224 -117952129 - AluSx SINE Alu 0 312 1 656 151 73 189 chr1 124712224 124712317 -117952036 + MER8 DNA MER2_type 137 239 0 3285 98 4 15 chr1 124712666 124713099 -117951254 - MLT2A2 LTR ERVL 0 453 24 2159 113 21 0 chr1 124713099 124713390 -117950963 - AluSx SINE Alu -15 297 1 3285 98 4 15 chr1 124713390 124713414 -117950939 - MLT2A2 LTR ERVL -429 24 1 29047 74 4 2 chr1 124713414 124717026 -117947327 - HERVL-A2 LTR ERVL 0 5654 2035 7648 104 35 17 chr1 124717018 124717928 -117946425 + HERVL LTR ERVL 946 1881 -3773 * 2315 104 0 19 chr1 124717928 124718244 -117946109 - AluSg SINE Alu 0 310 1 7648 104 35 17 chr1 124718244 124718414 -117945939 + HERVL LTR ERVL 1881 2046 -3608 566 113 0 0 chr1 124718414 124718494 -117945859 + MSTA LTR MaLR 349 428 0 8555 122 95 47 chr1 124718496 124718708 -117945645 + THE1C-int LTR MaLR 3 203 -1377 2411 150 43 20 chr1 124718708 124719148 -117945205 - LTR7 LTR ERV1 0 450 1 8555 122 95 47 chr1 124719148 124720441 -117943912 + THE1C-int LTR MaLR 203 1580 0 1442 144 125 86 chr1 124720441 124720802 -117943551 + THE1C LTR MaLR 1 375 0 507 226 150 44 chr1 124720803 124720942 -117943411 - L1MEc LINE L1 -4405 1991 1868 1784 171 7 0 chr1 124720942 124721235 -117943118 - L1MB5 LINE L1 -6 6168 5874 507 226 150 44 chr1 124721235 124721436 -117942917 - L1MEc LINE L1 -4528 1868 1615 * 44150 46 4 3 chr1 124721432 124727570 -117936783 - L1PA4 LINE L1 -3 6152 4 955 87 0 0 chr1 124727570 124727696 -117936657 - L1P1 LINE L1 -372 5783 5658 * 1592 31 5 0 chr1 124727692 124727883 -117936470 + L1P LINE L1 5071 5262 -884 391 273 102 16 chr1 124727878 124728006 -117936347 - L1PA15-16 LINE L1 -6710 139 1 * 2712 294 29 36 chr1 124728012 124728249 -117936104 - L1MEc LINE L1 -4999 1397 1160 2191 235 22 38 chr1 124728249 124728798 -117935555 - MLT1F LTR MaLR 0 542 3 2712 294 29 36 chr1 124728798 124729894 -117934459 - L1MEc LINE L1 -5236 1160 74 328 368 70 11 chr1 124730067 124730252 -117934101 - L2 LINE L2 -222 3091 2896 2720 228 69 48 chr1 124730340 124730376 -117933977 - L1ME1 LINE L1 -4 6231 6197 2207 180 82 20 chr1 124730376 124730815 -117933538 - MLT1C LTR MaLR 0 467 2 2720 228 69 48 chr1 124730815 124731859 -117932494 - L1ME1 LINE L1 -38 6197 5115 2725 20 0 0 chr1 124731859 124732157 -117932196 - AluYa5 SINE Alu -13 298 1 2720 228 69 48 chr1 124732157 124732484 -117931869 - L1ME1 LINE L1 -1120 5115 4796 1837 237 38 53 chr1 124732485 124733072 -117931281 - L1ME1 LINE L1 -1896 4319 3742 706 282 87 17 chr1 124733042 124733329 -117931024 - L1ME1 LINE L1 -6019 377 71 * 192 152 0 0 chr1 124733479 124733512 -117930841 + (CATA)n Simple_repeat Simple_repeat 3 35 0 1086 249 119 22 chr1 124733766 124734127 -117930226 + MER57B LTR ERV1 1 396 -38 854 131 0 0 chr1 124734127 124734257 -117930096 + L1P LINE L1 4870 4999 -1147 1615 149 9 114 chr1 124734357 124734903 -117929450 + L1P LINE L1 4957 5421 -744 277 226 131 24 chr1 124734919 124735003 -117929350 - MIR SINE MIR -135 127 35 40 21 0 0 chr1 124735267 124735314 -117929039 + AT_rich Low_complexity Low_complexity 1 47 0 301 245 31 51 chr1 124736761 124736859 -117927494 - MIR3 SINE MIR -5 203 108 184 300 62 12 chr1 124737102 124737182 -117927171 - MIR SINE MIR -98 164 81 243 313 179 0 chr1 124737757 124737891 -117926462 + L2 LINE L2 3107 3264 -8 25 31 0 0 chr1 124738157 124738189 -117926164 + AT_rich Low_complexity Low_complexity 1 32 0 228 106 15 61 chr1 124738442 124738508 -117925845 + (CATAT)n Simple_repeat Simple_repeat 4 66 0 357 270 26 17 chr1 124741598 124741713 -117922640 + MLT1K LTR MaLR 10 125 -463 762 216 174 12 chr1 124741746 124742005 -117922348 + MLT1K LTR MaLR 266 566 -22 249 143 89 36 chr1 124741955 124742011 -117922342 + LTR67 LTR ERVL 485 543 -14 * 678 294 54 40 chr1 124742195 124742491 -117921862 + L2 LINE L2 3014 3313 0 325 244 22 0 chr1 124743764 124743854 -117920499 + L2 LINE L2 2249 2340 -974 200 269 0 19 chr1 124744344 124744396 -117919957 + G-rich Low_complexity Low_complexity 4 54 0 906 220 67 95 chr1 124744496 124744926 -117919427 - MER61E LTR ERV1 -256 481 1 333 308 241 4 chr1 124745445 124745682 -117918671 + L2 LINE L2 2212 2504 -810 186 331 40 61 chr1 124745924 124746072 -117918281 + L2 LINE L2 2910 3054 -218 2194 95 0 20 chr1 124746513 124746819 -117917534 + AluSx SINE Alu 13 312 0 1168 195 13 18 chr1 124747840 124748066 -117916287 - MER2 DNA MER2_type -1 344 120 8011 230 29 22 chr1 124748070 124750561 -117913792 + L1M1 LINE L1 16 3208 -4357 320 172 129 78 chr1 124750684 124750800 -117913553 + L1ME4a LINE L1 5996 6117 -4 483 309 47 11 chr1 124750826 124751017 -117913336 + L2 LINE L2 2696 2893 -421 653 200 149 34 chr1 124751017 124751192 -117913161 + MIR SINE MIR 47 241 -21 642 283 85 37 chr1 124751212 124751587 -117912766 + L2 LINE L2 2921 3313 0 27 0 0 0 chr1 124752403 124752430 -117911923 + AT_rich Low_complexity Low_complexity 1 27 0 222 344 115 0 chr1 124752460 124752556 -117911797 + MER91C DNA MER1_type 34 140 0 1072 258 38 2 chr1 124752692 124752967 -117911386 + MLT1G1 LTR MaLR 1 248 -347 774 227 33 57 chr1 124752969 124752993 -117911360 - L1M4c LINE L1 -2659 3985 3962 1604 219 44 30 chr1 124752993 124753358 -117910995 - MLT1A2 LTR MaLR -4 370 1 774 227 33 57 chr1 124753358 124753613 -117910740 - L1M4c LINE L1 -2682 3962 3712 * 6395 208 56 49 chr1 124753594 124753782 -117910571 - L1M4c LINE L1 -4559 2087 1902 2271 113 0 6 chr1 124753782 124754093 -117910260 - AluSc SINE Alu 0 309 1 6395 208 56 49 chr1 124754093 124755959 -117908394 - L1M4c LINE L1 -4744 1902 18 2234 120 0 0 chr1 124756036 124756327 -117908026 + AluSx SINE Alu 1 291 -21 479 277 93 90 chr1 124756738 124757081 -117907272 + MLT1G1-int LTR MaLR 1028 1371 0 2211 246 11 59 chr1 124757081 124757158 -117907195 + MLT1G1 LTR MaLR 1 80 -515 2535 132 46 58 chr1 124757158 124757591 -117906762 + MSTA LTR MaLR 1 428 0 9893 163 31 21 chr1 124757591 124759226 -117905127 + MSTA-int LTR MaLR 1 1651 0 2584 155 52 0 chr1 124759226 124759633 -117904720 + MSTA LTR MaLR 1 428 0 2211 246 11 59 chr1 124759633 124760178 -117904175 + MLT1G1 LTR MaLR 77 595 0 600 271 76 3 chr1 124760213 124760459 -117903894 - L1M4 LINE L1 -407 5714 5486 576 350 41 25 chr1 124760460 124760777 -117903576 + L2 LINE L2 2951 3272 -41 2611 178 76 19 chr1 124760778 124761630 -117902723 - MER4B LTR ERV1 0 779 1 553 274 27 11 chr1 124761716 124761984 -117902369 - L1M4 LINE L1 -743 5403 5198 2622 27 0 7 chr1 124762564 124762863 -117901490 - AluY SINE Alu -14 297 1 300 276 35 11 chr1 124763434 124763521 -117900832 + MIR SINE MIR 24 112 -96 317 173 0 0 chr1 124764103 124764155 -117900198 + MER53 DNA DNA 1 52 -137 915 167 22 17 chr1 124764157 124764337 -117900016 + MER53 DNA DNA 9 189 0 286 293 57 8 chr1 124765543 124765666 -117898687 - MIR SINE MIR -21 241 113 220 219 254 44 chr1 124766662 124766776 -117897577 + MIR SINE MIR 111 248 -14 491 356 31 0 chr1 124766835 124767057 -117897296 + MIR SINE MIR 15 243 -19 1997 173 26 3 chr1 124767185 124767531 -117896822 - MLT1A1 LTR MaLR -2 363 10 1588 203 49 3 chr1 124767610 124767915 -117896438 - MER2 DNA MER2_type -25 320 2 333 255 0 11 chr1 124767932 124768026 -117896327 - MIR SINE MIR -111 151 59 1209 157 14 9 chr1 124768387 124768597 -117895756 + L1PA16 LINE L1 5939 6149 -17 2229 113 0 0 chr1 124768605 124768906 -117895447 + AluSc SINE Alu 1 301 -8 223 272 88 68 chr1 124768955 124769102 -117895251 - L2 LINE L2 -65 3248 3099 1853 176 28 11 chr1 124769388 124769745 -117894608 + MLT1A1 LTR MaLR 3 365 0 305 233 58 29 chr1 124771605 124771708 -117892645 + MER113 DNA MER1_type? 9 114 -407 1687 160 0 43 chr1 124772316 124772616 -117891737 + AluJb SINE Alu 1 287 -25 318 294 168 0 chr1 124773049 124773168 -117891185 + L2 LINE L2 3167 3305 -8 266 267 0 0 chr1 124773303 124773378 -117890975 - L1MEc LINE L1 -4145 2251 2177 467 129 0 0 chr1 124773388 124773458 -117890895 + MLT2B1 LTR ERVL 1 70 -450 524 240 190 0 chr1 124773460 124773639 -117890714 + MIR SINE MIR 37 249 -13 253 331 192 0 chr1 124774306 124774457 -117889896 + MIR3 SINE MIR 14 193 -15 659 213 142 58 chr1 124774729 124774954 -117889399 - MLT1K LTR MaLR -23 565 322 287 305 32 0 chr1 124775024 124775119 -117889234 - MLT1L LTR MaLR -432 183 86 285 269 28 35 chr1 124775439 124775580 -117888773 - L1P5 LINE L1 -697 5457 5318 393 298 66 19 chr1 124775635 124775893 -117888460 - L1M4 LINE L1 -839 5307 5038 900 239 73 56 chr1 124775894 124776337 -117888016 - MLT1H LTR MaLR -7 583 23 1414 281 80 40 chr1 124776373 124777298 -117887055 - L1M4 LINE L1 -1113 5033 4072 1437 244 74 55 chr1 124777318 124777526 -117886827 - L1M4 LINE L1 -2161 3985 3783 2721 88 16 5 chr1 124777526 124777910 -117886443 - L1MA1 LINE L1 0 6302 5915 1437 244 74 55 chr1 124777910 124778417 -117885936 - L1M4 LINE L1 -2363 3783 3256 1370 228 162 38 chr1 124778518 124778944 -117885409 + MLT2B1 LTR ERVL 1 479 -41 590 293 93 44 chr1 124779676 124780407 -117883946 + L1MEd LINE L1 1 822 -5297 201 229 0 0 chr1 124780588 124780623 -117883730 + polypurine Low_complexity Low_complexity 3 37 0 6179 161 9 18 chr1 124780679 124781430 -117882923 - L1P5 LINE L1 -1075 5071 4332 2150 125 0 22 chr1 124781430 124781743 -117882610 + AluSg SINE Alu 3 308 -2 6179 161 9 18 chr1 124781743 124782109 -117882244 - L1P5 LINE L1 -1814 4332 3964 6452 92 11 1 chr1 124782113 124783061 -117881292 + L1PA13 LINE L1 5205 6161 -2 464 306 91 31 chr1 124783100 124783486 -117880867 + L2 LINE L2 1812 2220 -1094 570 281 14 0 chr1 124783488 124783627 -117880726 + Charlie2 DNA MER1_type 15 155 -2627 544 167 14 83 chr1 124783736 124783826 -117880527 + Charlie2 DNA MER1_type 1857 1935 -927 1734 137 67 33 chr1 124783826 124784125 -117880228 + AluJb SINE Alu 1 309 -3 544 167 14 83 chr1 124784125 124784178 -117880175 + Charlie2 DNA MER1_type 1935 1990 -872 1084 162 58 11 chr1 124784179 124784370 -117879983 - MSTB LTR MaLR -192 234 35 2488 212 37 53 chr1 124784371 124784745 -117879608 + Charlie2 DNA MER1_type 2001 2379 -483 1134 104 186 0 chr1 124784745 124784938 -117879415 - MER30 DNA MER1_type -1 229 1 2488 212 37 53 chr1 124784938 124785177 -117879176 + Charlie2 DNA MER1_type 2379 2601 -261 1690 168 7 11 chr1 124785177 124785489 -117878864 - AluJb SINE Alu 0 311 1 2488 212 37 53 chr1 124785489 124785686 -117878667 + Charlie2 DNA MER1_type 2601 2800 -62 834 230 8 69 chr1 124785688 124785949 -117878404 + L1ME2 LINE L1 5904 6148 -16 288 281 62 48 chr1 124785988 124786198 -117878155 + L1MC4 LINE L1 7829 8041 -1 2078 172 45 11 chr1 124786787 124787165 -117877188 + MSTB LTR MaLR 36 426 0 367 279 115 19 chr1 124787217 124787512 -117876841 - MLT1L LTR MaLR -111 504 130 209 182 45 0 chr1 124787757 124787801 -117876552 - L2 LINE L2 -5 3308 3263 868 234 117 14 chr1 124787803 124788085 -117876268 - Tigger8 DNA MER2_type -199 467 157 545 209 58 7 chr1 124788095 124788234 -117876119 - MIR SINE MIR 0 262 117 238 300 161 56 chr1 124788288 124788661 -117875692 + L2 LINE L2 2853 3264 -8 753 232 30 10 chr1 124790412 124790610 -117873743 - MIR SINE MIR -13 249 48 2271 108 0 3 chr1 124790616 124790922 -117873431 - AluY SINE Alu -6 305 1 1023 167 21 42 chr1 124790961 124791037 -117873316 + MER5A DNA MER1_type 1 77 -112 2325 77 3 7 chr1 124791037 124791346 -117873007 + AluSq SINE Alu 1 308 0 1023 167 21 42 chr1 124791346 124791460 -117872893 + MER5A DNA MER1_type 77 188 -1 23 0 0 0 chr1 124791480 124791503 -117872850 + AT_rich Low_complexity Low_complexity 1 23 0 195 375 8 33 chr1 124791716 124791836 -117872517 - L2 LINE L2 -182 3090 2974 226 228 165 70 chr1 124791958 124792116 -117872237 + MIR SINE MIR 90 262 0 196 156 0 0 chr1 124792125 124792157 -117872196 + MIR SINE MIR 225 256 -6 477 228 18 70 chr1 124792217 124792388 -117871965 + L2 LINE L2 3130 3291 -22 591 298 19 0 chr1 124793854 124794059 -117870294 + MIR SINE MIR 28 236 -26 192 305 68 0 chr1 124794259 124794318 -117870035 - L2 LINE L2 -52 3220 3158 463 175 329 7 chr1 124794571 124794714 -117869639 - MER5A DNA MER1_type 0 189 1 302 307 31 39 chr1 124795258 124795385 -117868968 - MIR SINE MIR -50 212 87 658 258 131 0 chr1 124795715 124795936 -117868417 - MIR SINE MIR 0 262 13 958 184 34 24 chr1 124795997 124796203 -117868150 - MER3 DNA MER1_type 0 209 2 616 235 133 20 chr1 124796518 124796714 -117867639 - MIR SINE MIR -33 229 12 1735 163 37 7 chr1 124797681 124797976 -117866377 + AluJb SINE Alu 1 304 -8 282 56 0 0 chr1 124799082 124799118 -117865235 + (TG)n Simple_repeat Simple_repeat 1 36 0 1474 168 41 89 chr1 124799458 124799851 -117864502 - MLT1A2 LTR MaLR 0 374 1 282 255 104 19 chr1 124799869 124799975 -117864378 - L2 LINE L2 0 3313 3199 2009 144 14 0 chr1 124801037 124801328 -117863025 + AluJb SINE Alu 1 295 -17 206 261 0 0 chr1 124802256 124802302 -117862051 + L2 LINE L2 3186 3231 -41 355 281 11 0 chr1 124805062 124805151 -117859202 + MIR3 SINE MIR 82 171 -37 257 266 16 0 chr1 124805892 124805956 -117858397 + G-rich Low_complexity Low_complexity 4 68 0 1366 239 131 45 chr1 124806472 124806543 -117857810 - MLT1L LTR MaLR 0 615 551 492 232 28 50 chr1 124806543 124806724 -117857629 - MER104 DNA MER2_type 0 180 4 1366 239 131 45 chr1 124806724 124807180 -117857173 - MLT1L LTR MaLR -64 551 43 1394 243 152 23 chr1 124808524 124809038 -117855315 - MLT1K LTR MaLR -8 580 1 182 228 0 18 chr1 124809295 124809352 -117855001 - MIR SINE MIR -135 73 18 429 298 13 44 chr1 124811064 124811222 -117853131 + MIR SINE MIR 8 160 -102 587 198 49 56 chr1 124811244 124811406 -117852947 - MER46A DNA MER2_type -73 163 3 * 1190 149 21 0 chr1 124811264 124811458 -117852895 + MER46A DNA MER2_type 1 198 -38 5109 137 22 1 chr1 124811804 124812634 -117851719 + L1MA4 LINE L1 5447 6293 -7 35 24 0 0 chr1 124812634 124812676 -117851677 + AT_rich Low_complexity Low_complexity 1 42 0 210 347 0 20 chr1 124814072 124814170 -117850183 + MIR SINE MIR 127 222 -40 5819 117 39 1 chr1 124814189 124815069 -117849284 - L1PA16 LINE L1 0 6166 5254 355 295 9 0 chr1 124815812 124815917 -117848436 + MIR SINE MIR 59 164 -98 196 288 36 110 chr1 124816179 124816300 -117848053 + MIR SINE MIR 35 134 -128 1844 139 66 3 chr1 124816300 124816587 -117847766 + AluJo SINE Alu 1 305 -7 196 288 36 110 chr1 124816587 124816684 -117847669 + MIR SINE MIR 134 237 -25 1658 51 0 5 chr1 124817611 124817808 -117846545 - L1PB1 LINE L1 0 6151 5956 544 309 43 27 chr1 124818328 124818516 -117845837 + MIR3 SINE MIR 2 192 -16 616 304 124 19 chr1 124819606 124819984 -117844369 - L2 LINE L2 -838 2476 2059 282 271 49 130 chr1 124820080 124820449 -117843904 - L2 LINE L2 -50 3222 2884 923 281 65 55 chr1 124820600 124821095 -117843258 + L1ME4a LINE L1 5329 5828 -293 2021 110 7 0 chr1 124821095 124821368 -117842985 + AluSx SINE Alu 20 294 -18 2144 99 3 0 chr1 124821888 124822192 -117842161 - AluSx SINE Alu 0 305 1 395 331 58 19 chr1 124822423 124822577 -117841776 + L2 LINE L2 3112 3271 -1 708 262 68 65 chr1 124823887 124824135 -117840218 + MIR SINE MIR 2 250 -12 1915 130 31 0 chr1 124825578 124825870 -117838483 - AluJb SINE Alu -11 301 1 220 271 16 101 chr1 124828176 124828305 -117836048 + MIR3 SINE MIR 85 202 -6 25 31 0 0 chr1 124828379 124828411 -117835942 + AT_rich Low_complexity Low_complexity 1 32 0 440 210 24 0 chr1 124828573 124828740 -117835613 + (TA)n Simple_repeat Simple_repeat 1 171 0 893 184 0 0 chr1 124829069 124829205 -117835148 + MER2 DNA MER2_type 1 136 -209 4662 117 37 30 chr1 124829216 124829953 -117834400 - L1MA4 LINE L1 0 6300 5559 6324 150 19 10 chr1 124829953 124831064 -117833289 - L1MA4 LINE L1 -958 5188 4068 980 147 6 6 chr1 124831073 124831229 -117833124 + AluSg SINE Alu 1 156 -154 391 220 160 20 chr1 124831743 124831893 -117832460 - MIR SINE MIR -29 233 63 255 114 0 0 chr1 124831893 124831928 -117832425 + U2 snRNA snRNA 1 35 -153 191 288 68 17 chr1 124831928 124831987 -117832366 - MIR SINE MIR -188 74 13 450 229 0 57 chr1 124833316 124833421 -117830932 + MIR3 SINE MIR 86 184 -24 3020 140 17 0 chr1 124834924 124835345 -117829008 - MSTA LTR MaLR 0 428 1 301 235 242 0 chr1 124835835 124835984 -117828369 + L3 LINE CR1 1379 1563 -14 380 269 76 0 chr1 124838615 124838734 -117825619 + MIR SINE MIR 27 154 -108 229 260 91 0 chr1 124838886 124838963 -117825390 + L2 LINE L2 3182 3265 -7 246 314 65 8 chr1 124840097 124840221 -117824132 - MIR SINE MIR -63 145 30 345 24 0 0 chr1 124840239 124840281 -117824072 + (TG)n Simple_repeat Simple_repeat 1 42 0 353 252 35 17 chr1 124840382 124840497 -117823856 + MIR SINE MIR 82 198 -64 296 322 22 0 chr1 124840727 124840817 -117823536 - MIR SINE MIR -18 244 153 283 361 74 16 chr1 124841985 124842107 -117822246 + L2 LINE L2 3142 3270 -2 180 0 0 0 chr1 124842391 124842411 -117821942 + (CACCT)n Simple_repeat Simple_repeat 3 22 0 346 254 42 123 chr1 124842903 124843139 -117821214 + L3 LINE CR1 1031 1247 -330 417 292 185 11 chr1 124843613 124843791 -117820562 + L3 LINE CR1 1368 1576 -1 290 363 63 63 chr1 124844108 124844455 -117819898 - L2 LINE L2 -54 3218 2872 452 314 78 13 chr1 124844787 124844940 -117819413 - MIR3 SINE MIR -41 167 5 524 338 70 42 chr1 124845106 124845390 -117818963 + L2 LINE L2 2981 3272 0 2149 125 0 16 chr1 124846059 124846370 -117817983 + AluSg SINE Alu 3 308 -2 2332 138 0 6 chr1 124846374 124846737 -117817616 - L1P LINE L1 -1822 4324 3964 6345 101 9 2 chr1 124846741 124847674 -117816679 + L1PA13 LINE L1 5205 6143 -20 36455 34 2 1 chr1 124848188 124853394 -117810959 + L1PA2 LINE L1 1063 6151 -4 246 344 15 23 chr1 124853790 124853921 -117810432 + L2 LINE L2 2246 2375 -939 339 245 32 32 chr1 124854430 124854524 -117809829 + MIR3 SINE MIR 88 181 -27 403 259 84 36 chr1 124854981 124855147 -117809206 - MIR SINE MIR 0 262 89 5616 173 22 16 chr1 124857575 124859143 -117805210 + L1PB4 LINE L1 4215 5799 -357 453 36 0 0 chr1 124859143 124859198 -117805155 + (TA)n Simple_repeat Simple_repeat 2 56 0 5616 173 22 16 chr1 124859198 124859437 -117804916 + L1PB4 LINE L1 5799 6035 -121 43682 33 23 2 chr1 124859440 124865033 -117799320 + L1P1 LINE L1 13 5726 -429 245 275 110 9 chr1 124865939 124866048 -117798305 + MIR3 SINE MIR 81 200 -8 479 113 12 25 chr1 124866325 124866405 -117797948 - MER116 DNA Mariner 0 80 2 1413 283 49 7 chr1 124866605 124867058 -117797295 - LTR33 LTR ERVL -7 514 43 270 270 26 26 chr1 124867255 124867370 -117796983 - L1MC5 LINE L1 -36 7925 7811 559 271 115 53 chr1 124867563 124867903 -117796450 - L1MC4a LINE L1 -1903 5905 5545 388 211 56 0 chr1 124868419 124868509 -117795844 - MER69 DNA AcHobo -1 2525 2431 287 313 151 26 chr1 124869474 124869666 -117794687 - MIR SINE MIR -14 248 33 492 120 30 0 chr1 124869768 124869868 -117794485 + GA-rich Low_complexity Low_complexity 5 107 0 2335 243 79 38 chr1 124870034 124870812 -117793541 - L1ME3A LINE L1 0 6170 5354 1724 203 13 58 chr1 124870812 124871192 -117793161 - MLT1A1 LTR MaLR 0 365 3 2335 243 79 38 chr1 124871192 124871249 -117793104 - L1ME3A LINE L1 -816 5354 5301 1589 293 43 25 chr1 124871308 124871846 -117792507 - L1ME3A LINE L1 -981 5165 4607 2126 98 49 0 chr1 124871846 124872131 -117792222 + AluSq SINE Alu 1 299 -14 1589 293 43 25 chr1 124872131 124872363 -117791990 - L1ME3A LINE L1 -1539 4607 4381 3942 213 47 28 chr1 124872370 124874189 -117790164 - L1ME2 LINE L1 -3 6161 4301 1687 235 121 50 chr1 124874195 124874698 -117789655 - MLT1F LTR MaLR -3 539 1 809 274 48 83 chr1 124874698 124875049 -117789304 - MLT1E-int LTR MaLR 0 1371 1033 365 335 27 16 chr1 124875257 124875442 -117788911 - MLT1E-int LTR MaLR -493 878 692 818 287 67 25 chr1 124875683 124876150 -117788203 - MLT1E-int LTR MaLR -770 601 2 297 51 0 0 chr1 124876400 124876439 -117787914 + (CA)n Simple_repeat Simple_repeat 2 40 0 537 256 24 16 chr1 124876470 124876595 -117787758 - MIR SINE MIR -63 145 20 240 301 49 41 chr1 124877071 124877194 -117787159 + L2 LINE L2 2263 2386 -928 259 197 13 66 chr1 124877458 124877534 -117786819 - L2 LINE L2 -20 3252 3181 269 328 81 53 chr1 124877624 124878098 -117786255 + L2 LINE L2 2597 3083 -189 28 48 0 0 chr1 124878106 124878148 -117786205 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 124878200 124878229 -117786124 + AT_rich Low_complexity Low_complexity 1 29 0 333 0 0 0 chr1 124879007 124879044 -117785309 + (T)n Simple_repeat Simple_repeat 1 37 0 497 310 76 13 chr1 124879116 124879274 -117785079 - MIR3 SINE MIR -14 194 27 237 373 93 21 chr1 124879718 124879954 -117784399 + L2 LINE L2 224 476 -2838 194 344 32 11 chr1 124880051 124880144 -117784209 + L2 LINE L2 1323 1417 -1897 1759 262 51 49 chr1 124880587 124881179 -117783174 - MLT1E LTR MaLR 0 593 1 1401 164 33 4 chr1 124881725 124881999 -117782354 + L1MC3 LINE L1 7504 7785 0 201 74 0 0 chr1 124882163 124882190 -117782163 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 222 236 0 28 chr1 124882358 124882430 -117781923 + CT-rich Low_complexity Low_complexity 2 71 0 190 79 26 26 chr1 124882906 124882944 -117781409 + (TCC)n Simple_repeat Simple_repeat 3 40 0 287 274 36 12 chr1 124883515 124883599 -117780754 + L2 LINE L2 3203 3288 -25 1648 187 149 44 chr1 124884384 124884839 -117779514 - MLT1D LTR MaLR -2 503 1 461 241 118 22 chr1 124886158 124886365 -117777988 + MIR SINE MIR 32 262 0 327 49 0 0 chr1 124886467 124886508 -117777845 + (GA)n Simple_repeat Simple_repeat 2 42 0 424 238 119 24 chr1 124887108 124887276 -117777077 + MIR SINE MIR 7 190 -72 1460 152 156 8 chr1 124887621 124887884 -117776469 + AluJo SINE Alu 1 302 0 243 88 0 0 chr1 124887940 124887974 -117776379 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 254 298 58 10 chr1 124889657 124889761 -117774592 - L2 LINE L2 -4 3309 3201 281 257 179 50 chr1 124890219 124890359 -117773994 - MIR SINE MIR -104 158 1 428 300 113 7 chr1 124890770 124890920 -117773433 - MIR3 SINE MIR -24 184 19 353 304 35 26 chr1 124891486 124891601 -117772752 + MIR SINE MIR 33 148 -114 62 52 0 0 chr1 124891794 124891891 -117772462 + AT_rich Low_complexity Low_complexity 1 97 0 228 172 69 46 chr1 124891892 124892066 -117772287 + (TTAA)n Simple_repeat Simple_repeat 1 178 0 340 263 120 40 chr1 124892176 124892361 -117771992 + MIR SINE MIR 44 241 -21 284 243 70 0 chr1 124892726 124892808 -117771545 + L2 LINE L2 2925 3012 -260 406 299 83 97 chr1 124892916 124893351 -117771002 + L2 LINE L2 2819 3247 -25 251 142 71 62 chr1 124895471 124895584 -117768769 + (CTATA)n Simple_repeat Simple_repeat 2 115 0 365 366 58 11 chr1 124895721 124895912 -117768441 + MIR SINE MIR 2 201 -61 493 221 176 0 chr1 124896221 124896352 -117768001 + MER5A DNA MER1_type 36 189 0 531 272 141 60 chr1 124897090 124897728 -117766625 + L2 LINE L2 2502 3313 0 1169 229 40 0 chr1 124898017 124898266 -117766087 + MIR SINE MIR 4 262 0 194 91 0 30 chr1 124899224 124899257 -117765096 + L2 LINE L2 3273 3304 -9 984 117 29 0 chr1 124899365 124899502 -117764851 + AluJb SINE Alu 1 141 -171 236 30 30 0 chr1 124899520 124899553 -117764800 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 28 29 0 0 chr1 124899559 124899594 -117764759 + AT_rich Low_complexity Low_complexity 1 35 0 207 369 78 0 chr1 124899771 124899912 -117764441 + MIR SINE MIR 55 206 -56 194 279 12 0 chr1 124901617 124901703 -117762650 + (TG)n Simple_repeat Simple_repeat 2 88 0 1727 150 65 7 chr1 124901734 124902040 -117762313 + MER33 DNA MER1_type 1 324 0 2074 105 117 20 chr1 124902378 124902720 -117761633 + THE1C LTR MaLR 1 375 0 297 226 107 0 chr1 124902799 124902883 -117761470 - MIR3 SINE MIR -14 194 102 189 311 33 33 chr1 124902894 124902955 -117761398 + MIR SINE MIR 15 75 -187 351 308 33 8 chr1 124903090 124903210 -117761143 - L2 LINE L2 -9 3304 3182 363 269 173 35 chr1 124903839 124904172 -117760181 - L2 LINE L2 -173 3140 2730 209 254 0 18 chr1 124904197 124904252 -117760101 + L2 LINE L2 3218 3271 -1 2021 130 0 20 chr1 124905588 124905907 -117758446 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 124905982 124906010 -117758343 + AT_rich Low_complexity Low_complexity 1 28 0 1099 224 144 3 chr1 124906257 124906556 -117757797 + MER58B DNA MER1_type 1 341 0 266 298 90 11 chr1 124907030 124907208 -117757145 + L2 LINE L2 2864 3055 -217 522 337 120 75 chr1 124907529 124907987 -117756366 + L2 LINE L2 2786 3264 -8 553 242 109 6 chr1 124908249 124908414 -117755939 - MIR SINE MIR -44 218 37 355 258 21 0 chr1 124908859 124908952 -117755401 + MIR3 SINE MIR 9 103 -105 250 286 162 0 chr1 124908970 124909075 -117755278 + L2 LINE L2 3142 3263 -9 234 254 99 0 chr1 124909075 124909146 -117755207 + MIR SINE MIR 115 192 -70 202 182 0 0 chr1 124909151 124909184 -117755169 + (CA)n Simple_repeat Simple_repeat 2 34 0 340 281 12 0 chr1 124909939 124910021 -117754332 - L1ME LINE L1 -5978 92 10 9692 174 18 12 chr1 124910122 124912795 -117751558 + L1PB3 LINE L1 3371 6053 -101 31 44 0 0 chr1 124912989 124913034 -117751319 + AT_rich Low_complexity Low_complexity 1 45 0 372 248 115 28 chr1 124913057 124913090 -117751263 + L1ME LINE L1 1705 1734 -4692 423 79 191 0 chr1 124913090 124913153 -117751200 - MADE1 DNA Mariner -1 79 5 372 248 115 28 chr1 124913153 124913181 -117751172 + L1ME LINE L1 1734 1758 -4668 225 0 0 0 chr1 124913181 124913206 -117751147 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 372 248 115 28 chr1 124913206 124913445 -117750908 + L1ME LINE L1 1758 1967 -4459 1668 279 50 61 chr1 124913446 124914640 -117749713 + L1MEc LINE L1 42 1185 -5033 647 242 71 0 chr1 124914649 124914847 -117749506 + L1MEc LINE L1 2199 2410 -3986 583 131 0 0 chr1 124914848 124914932 -117749421 + L1MC/D LINE L1 5522 5605 -754 24 32 0 0 chr1 124915102 124915133 -117749220 + AT_rich Low_complexity Low_complexity 1 31 0 3466 236 42 31 chr1 124915162 124915602 -117748751 + L1ME LINE L1 4515 4949 -1477 2566 28 0 53 chr1 124915602 124915925 -117748428 - AluY SINE Alu -5 306 1 3466 236 42 31 chr1 124915925 124916609 -117747744 + L1ME LINE L1 4949 5651 -775 539 209 36 98 chr1 124916596 124916741 -117747612 + L1MEc LINE L1 2409 2537 -3678 * 2383 77 0 6 chr1 124916741 124917053 -117747300 - AluY SINE Alu -1 310 1 539 209 36 98 chr1 124917053 124917132 -117747221 + L1MEc LINE L1 2537 2619 -3596 202 301 186 0 chr1 124917296 124917409 -117746944 - L2 LINE L2 0 3313 3180 188 250 0 0 chr1 124917416 124917456 -117746897 + MIR SINE MIR 108 147 -61 255 300 58 8 chr1 124917470 124917590 -117746763 + L1ME LINE L1 6011 6136 -314 1189 218 100 9 chr1 124917755 124918094 -117746259 + HAL1 LINE L1 1053 1422 -1085 423 241 105 56 chr1 124918094 124918198 -117746155 - MLT1J2 LTR MaLR 0 450 353 1713 121 0 4 chr1 124918198 124918429 -117745924 + MER30 DNA MER1_type 1 230 0 423 241 105 56 chr1 124918429 124918635 -117745718 - MLT1J2 LTR MaLR -97 353 73 3149 241 68 37 chr1 124918686 124919732 -117744621 + HAL1 LINE L1 1425 2502 -5 206 67 0 0 chr1 124920409 124920439 -117743914 - L2 LINE L2 0 3313 3284 204 149 0 0 chr1 124921371 124921418 -117742935 + (A)n Simple_repeat Simple_repeat 1 47 0 2093 143 3 0 chr1 124921737 124922045 -117742308 + AluSg SINE Alu 1 309 -1 230 304 122 20 chr1 124922053 124922201 -117742152 - MIR SINE MIR -8 254 92 635 285 175 56 chr1 124922358 124923274 -117741079 + L2 LINE L2 2249 3298 -15 232 254 42 28 chr1 124923397 124923468 -117740885 - MIR SINE MIR -95 113 42 666 261 52 65 chr1 124924148 124924439 -117739914 + L2 LINE L2 3022 3308 -5 1019 259 101 11 chr1 124924473 124924909 -117739444 + L1ME4a LINE L1 5617 6091 -30 254 200 0 0 chr1 124925037 124925082 -117739271 + MLT1I LTR MaLR 98 142 -267 1156 207 21 24 chr1 124925282 124925572 -117738781 + MER33 DNA MER1_type 35 323 -1 651 287 29 6 chr1 124926221 124926395 -117737958 - MIR3 SINE MIR -14 194 17 542 245 7 40 chr1 124928574 124928725 -117735628 - MER5A DNA MER1_type -4 185 40 273 283 20 96 chr1 124928823 124929037 -117735316 + MIR SINE MIR 25 219 -43 204 182 0 0 chr1 124930672 124930716 -117733637 + (TG)n Simple_repeat Simple_repeat 1 44 0 2151 135 3 3 chr1 124931726 124932037 -117732316 + AluSx SINE Alu 1 311 -1 261 308 62 53 chr1 124932483 124932615 -117731738 - MIR SINE MIR -56 152 20 381 43 0 0 chr1 124934182 124934229 -117730124 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 120 0 0 chr1 124935167 124935217 -117729136 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 252 0 0 0 chr1 124935519 124935547 -117728806 + (A)n Simple_repeat Simple_repeat 1 28 0 418 223 32 83 chr1 124936756 124936913 -117727440 + MIR3 SINE MIR 14 162 -46 585 322 14 76 chr1 124937537 124937891 -117726462 - L3 LINE CR1 -206 1371 1040 511 204 134 14 chr1 124937987 124938129 -117726224 - MER103 DNA DNA 0 166 8 204 289 0 0 chr1 124938231 124938276 -117726077 + polypyrimidine Low_complexity Low_complexity 4 48 0 208 256 23 116 chr1 124938278 124938407 -117725946 - L3 LINE CR1 -621 956 840 638 291 38 33 chr1 124938503 124938716 -117725637 - L3 LINE CR1 -1016 561 348 203 333 98 0 chr1 124939053 124939155 -117725198 - L2 LINE L2 -204 3068 2957 2481 161 74 81 chr1 124939192 124939734 -117724619 + MLT2B3 LTR ERVL 17 554 0 188 221 147 29 chr1 124939924 124939992 -117724361 - L2 LINE L2 -813 2501 2426 21 57 0 0 chr1 124941194 124941229 -117723124 + AT_rich Low_complexity Low_complexity 1 35 0 365 237 153 51 chr1 124941387 124941614 -117722739 - MIR SINE MIR 0 262 12 448 296 43 21 chr1 124942408 124942594 -117721759 - MIR3 SINE MIR 0 208 19 848 191 0 0 chr1 124942958 124943089 -117721264 + FLAM_A SINE Alu 1 131 -2 696 275 44 35 chr1 124943108 124943337 -117721016 - MIR SINE MIR -21 241 11 208 244 61 49 chr1 124944035 124944117 -117720236 + MIR SINE MIR 124 206 -56 1010 196 45 40 chr1 124945060 124945259 -117719094 - AluJo SINE Alu -112 200 1 339 25 0 0 chr1 124946313 124946353 -117718000 + (TG)n Simple_repeat Simple_repeat 1 40 0 267 143 0 41 chr1 124947028 124947077 -117717276 + FRAM/FAM SINE Alu 12 58 -108 1748 170 110 43 chr1 124947163 124947632 -117716721 - LTR10A LTR ERV1 -61 548 1 374 220 35 121 chr1 124948409 124948550 -117715803 - MIR3 SINE MIR -28 180 52 268 396 58 14 chr1 124948660 124948799 -117715554 - L2 LINE L2 -3 3269 3125 209 234 21 0 chr1 124949060 124949107 -117715246 + CT-rich Low_complexity Low_complexity 3 50 0 231 281 24 24 chr1 124949760 124949842 -117714511 + L3 LINE CR1 1495 1576 -1 330 226 90 38 chr1 124949905 124950038 -117714315 + MIR SINE MIR 71 210 -52 1169 318 75 47 chr1 124950376 124951219 -117713134 - L3 LINE CR1 -34 1543 678 302 276 112 9 chr1 124953231 124953347 -117711006 + L1MEd LINE L1 37 164 -5955 364 330 44 61 chr1 124953418 124953760 -117710593 + L1MEd LINE L1 291 626 -5493 429 20 0 0 chr1 124953771 124953821 -117710532 + (CA)n Simple_repeat Simple_repeat 2 51 0 501 282 100 61 chr1 124953860 124955215 -117709138 + L1MEd LINE L1 802 2258 -4052 274 80 20 20 chr1 124955216 124955266 -117709087 - LTR54 LTR ERV1 0 510 461 396 246 97 9 chr1 124955266 124955380 -117708973 + L1MC4 LINE L1 7776 7899 -143 571 290 60 58 chr1 124955442 124955980 -117708373 + HAL1b LINE L1 66 604 -744 3264 283 75 51 chr1 124956027 124957422 -117706931 - HERV16 LTR ERVL -3567 1429 1 669 324 113 3 chr1 124957422 124957715 -117706638 - LTR16A LTR ERVL 0 450 126 2496 221 71 53 chr1 124958099 124958984 -117705369 + L1MC5 LINE L1 6636 7536 -425 261 277 64 74 chr1 124959080 124959282 -117705071 + L1ME3A LINE L1 5962 6161 -9 560 276 141 32 chr1 124959287 124959841 -117704512 + L1MEd LINE L1 2906 3519 -2610 316 241 43 97 chr1 124959855 124960133 -117704220 + L1MEd LINE L1 4066 4328 -1801 5526 142 55 15 chr1 124960223 124960698 -117703655 + L1MA9 LINE L1 5291 5746 -566 279 0 0 0 chr1 124960698 124960729 -117703624 + (CA)n Simple_repeat Simple_repeat 1 31 0 5526 142 55 15 chr1 124960729 124960755 -117703598 + L1MA9 LINE L1 5746 5770 -542 2432 77 0 32 chr1 124960755 124961067 -117703286 + AluSc SINE Alu 1 302 -7 5526 142 55 15 chr1 124961067 124961398 -117702955 + L1MA9 LINE L1 5770 6171 -141 201 94 0 0 chr1 124961398 124961430 -117702923 + (CA)n Simple_repeat Simple_repeat 1 32 0 5526 142 55 15 chr1 124961430 124961578 -117702775 + L1MA9 LINE L1 6171 6312 0 181 283 0 0 chr1 124961875 124961921 -117702432 + L2 LINE L2 2684 2729 -585 1505 285 86 13 chr1 124962082 124963508 -117700845 + L1MEd LINE L1 4396 5929 -224 1935 194 55 0 chr1 124963642 124963988 -117700365 + MLT1A1 LTR MaLR 1 365 0 2480 4 0 4 chr1 124964016 124964287 -117700066 + AluYa5 SINE Alu 42 311 0 2148 143 25 25 chr1 124965168 124965524 -117698829 + MLT1A1 LTR MaLR 10 365 0 615 202 48 0 chr1 124965524 124965643 -117698710 + MER58B DNA MER1_type 179 303 -38 483 327 26 5 chr1 124965661 124965830 -117698523 - MLT1L LTR MaLR -52 563 293 389 250 145 88 chr1 124965837 124966133 -117698220 - MLT1L LTR MaLR -293 322 10 685 318 34 40 chr1 124966187 124966743 -117697610 + HAL1b LINE L1 137 689 -659 413 243 153 0 chr1 124966931 124967042 -117697311 - MER5B DNA MER1_type -49 129 2 2425 133 10 10 chr1 124967061 124967451 -117696902 - MLT1B LTR MaLR 0 390 1 260 161 81 48 chr1 124967845 124967907 -117696446 + MER87 LTR ERV1 121 184 -357 * 1979 153 60 156 chr1 124967875 124968497 -117695856 + LTR8A LTR ERV1 161 722 -5 241 387 44 7 chr1 124968760 124968897 -117695456 + L3 LINE CR1 167 308 -1269 279 0 0 0 chr1 124968955 124968986 -117695367 + (TG)n Simple_repeat Simple_repeat 1 31 0 216 143 0 0 chr1 124968995 124969037 -117695316 + (GA)n Simple_repeat Simple_repeat 1 42 0 416 167 133 25 chr1 124969046 124969166 -117695187 - MER103 DNA DNA -2 164 32 804 117 124 7 chr1 124969244 124969405 -117694948 + L1PA10 LINE L1 6007 6168 0 1490 294 96 64 chr1 124969575 124969894 -117694459 + L3 LINE CR1 299 606 -971 1130 225 11 15 chr1 124969894 124970156 -117694197 + MIR SINE MIR 2 262 0 1490 294 96 64 chr1 124970156 124971074 -117693279 + L3 LINE CR1 606 1576 -1 2155 117 0 3 chr1 124973380 124973678 -117690675 + AluSg SINE Alu 1 297 -13 223 250 135 77 chr1 124973751 124973907 -117690446 + L2 LINE L2 2443 2607 -707 369 244 12 0 chr1 124974278 124974364 -117689989 + MIR SINE MIR 48 134 -128 243 309 32 41 chr1 124975147 124975270 -117689083 + MIR SINE MIR 31 152 -110 210 37 0 0 chr1 124975472 124975499 -117688854 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 292 288 137 59 chr1 124975603 124975756 -117688597 + MLT1I LTR MaLR 245 409 0 416 252 13 24 chr1 124977336 124977482 -117686871 - MIR SINE MIR -60 148 45 399 213 98 46 chr1 124977525 124977699 -117686654 - MIR SINE MIR -59 203 21 253 322 11 22 chr1 124977833 124977923 -117686430 - MIR3 SINE MIR -48 160 72 597 259 22 49 chr1 124978229 124978414 -117685939 - MLT1I LTR MaLR -191 218 39 211 286 75 22 chr1 124978420 124978619 -117685734 + MIR SINE MIR 6 255 -7 233 361 52 0 chr1 124978696 124978851 -117685502 - L2 LINE L2 -652 2662 2500 234 298 51 67 chr1 124978978 124979107 -117685246 - L2 LINE L2 -2799 515 388 1917 204 11 3 chr1 124979107 124979469 -117684884 + MLT1A1 LTR MaLR 1 365 0 234 298 51 67 chr1 124979469 124979517 -117684836 - L2 LINE L2 -2926 388 341 414 103 10 124 chr1 124980486 124980583 -117683770 - L1MB3 LINE L1 -8 6175 6090 1947 197 11 6 chr1 124981202 124981557 -117682796 - MLT1A1 LTR MaLR -2 363 7 250 348 78 9 chr1 124981794 124981909 -117682444 - L2 LINE L2 -3 3269 3147 366 316 111 62 chr1 124983092 124983478 -117680875 + L2 LINE L2 2865 3269 -3 400 333 77 27 chr1 124983908 124984025 -117680328 + L3 LINE CR1 403 513 -1064 2179 126 3 0 chr1 124984025 124984319 -117680034 + AluSx SINE Alu 1 295 -17 400 333 77 27 chr1 124984319 124984423 -117679930 + L3 LINE CR1 513 635 -942 219 333 38 33 chr1 124984407 124984617 -117679736 + L2 LINE L2 2827 3037 -235 * 256 211 88 0 chr1 124985530 124985587 -117678766 - L2 LINE L2 -41 3231 3170 1695 259 32 20 chr1 124985721 124986222 -117678131 + L3 LINE CR1 902 1408 -169 436 241 88 15 chr1 124986454 124986591 -117677762 - MIR SINE MIR -113 149 3 23 0 0 0 chr1 124986695 124986718 -117677635 + AT_rich Low_complexity Low_complexity 1 23 0 201 139 0 0 chr1 124987541 124987584 -117676769 + (A)n Simple_repeat Simple_repeat 1 43 0 369 268 0 10 chr1 124988897 124988994 -117675359 + MER5A DNA MER1_type 10 105 -84 227 315 79 24 chr1 124989279 124989406 -117674947 + L2 LINE L2 3137 3270 -2 198 205 26 0 chr1 124990555 124990594 -117673759 + L2 LINE L2 3017 3056 -216 180 152 0 0 chr1 124990751 124990784 -117673569 + (CA)n Simple_repeat Simple_repeat 1 33 0 227 259 25 25 chr1 124990790 124990871 -117673482 + (TATG)n Simple_repeat Simple_repeat 4 84 0 377 261 42 35 chr1 124990915 124991057 -117673296 - MIR SINE MIR -80 182 40 279 267 0 23 chr1 124991676 124991762 -117672591 + MIR SINE MIR 179 262 0 482 225 21 94 chr1 124991890 124992081 -117672272 - MIR SINE MIR -6 256 80 680 23 12 0 chr1 124992232 124992318 -117672035 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 304 256 49 18 chr1 124992545 124992686 -117671667 - MIR SINE MIR -64 144 30 490 230 18 9 chr1 124996652 124996765 -117667588 + MER94 DNA DNA 21 134 0 220 200 0 0 chr1 124997426 124997466 -117666887 + CT-rich Low_complexity Low_complexity 4 43 0 180 200 0 0 chr1 124997921 124997966 -117666387 + (TG)n Simple_repeat Simple_repeat 2 46 0 203 374 99 8 chr1 124998030 124998161 -117666192 + MIR SINE MIR 52 194 -68 228 296 25 0 chr1 124998458 124998539 -117665814 + L2 LINE L2 3230 3312 -1 2298 92 7 3 chr1 125000124 125000429 -117663924 - AluSc SINE Alu -3 306 1 25 0 0 0 chr1 125000912 125000937 -117663416 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr1 125001104 125001128 -117663225 + AT_rich Low_complexity Low_complexity 1 24 0 294 280 32 72 chr1 125002038 125002065 -117662288 - MIR3 SINE MIR -27 181 154 1058 182 11 11 chr1 125002065 125002252 -117662101 - MER5A DNA MER1_type 0 189 3 294 280 32 72 chr1 125002252 125002349 -117662004 - MIR3 SINE MIR -54 154 62 303 286 73 28 chr1 125002811 125002989 -117661364 - MIR SINE MIR -75 187 2 833 244 207 26 chr1 125004174 125004668 -117659685 - L2 LINE L2 -2 3311 2719 255 296 92 0 chr1 125005395 125005493 -117658860 + MIR3 SINE MIR 101 207 -1 301 316 27 108 chr1 125005565 125005900 -117658453 - L2 LINE L2 0 3272 2965 853 222 32 11 chr1 125006814 125006999 -117657354 + MER5A DNA MER1_type 1 189 0 1230 204 69 3 chr1 125058006 125058295 -117606058 - L1MD3 LINE L1 -13 7982 7675 1112 163 99 0 chr1 125058311 125058509 -117605844 - L1MD2 LINE L1 -2 6357 6131 285 89 0 0 chr1 125058509 125058554 -117605799 + (TG)n Simple_repeat Simple_repeat 2 46 0 1112 163 99 0 chr1 125058554 125058588 -117605765 - L1MD2 LINE L1 -228 6131 6102 922 179 16 5 chr1 125058701 125058891 -117605462 - L1MD2 LINE L1 -426 5933 5742 * 1108 219 48 7 chr1 125058888 125059180 -117605173 - L1MC4a LINE L1 -309 7499 7196 223 345 36 61 chr1 125059580 125059745 -117604608 + L2 LINE L2 1461 1621 -1693 203 167 0 0 chr1 125059837 125059873 -117604480 + (TAAG)n Simple_repeat Simple_repeat 2 37 0 249 195 266 44 chr1 125060222 125060319 -117604034 + MIR SINE MIR 40 156 -63 584 295 58 33 chr1 125060322 125060563 -117603790 - MIR SINE MIR -3 259 13 304 290 14 0 chr1 125060589 125060658 -117603695 + L2 LINE L2 3200 3269 -3 2089 113 14 0 chr1 125060904 125061196 -117603157 - AluY SINE Alu -15 296 1 29 28 0 0 chr1 125061458 125061494 -117602859 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr1 125062403 125062431 -117601922 + AT_rich Low_complexity Low_complexity 1 28 0 265 293 24 12 chr1 125062725 125062807 -117601546 + MIR SINE MIR 25 107 -155 612 304 47 22 chr1 125062816 125063175 -117601178 - MLT1I LTR MaLR -3 406 39 326 259 38 15 chr1 125063503 125063634 -117600719 + L1ME4a LINE L1 5969 6102 -19 502 225 117 0 chr1 125063668 125063788 -117600565 - MIR SINE MIR -74 188 55 26 30 0 0 chr1 125063788 125063821 -117600532 + AT_rich Low_complexity Low_complexity 1 33 0 227 302 87 63 chr1 125063847 125063973 -117600380 - L2 LINE L2 -22 3250 3122 196 289 0 0 chr1 125064040 125064092 -117600261 + L2 LINE L2 3262 3313 0 324 296 46 19 chr1 125064115 125064223 -117600130 - MIR SINE MIR -63 145 35 1753 300 122 9 chr1 125064340 125065126 -117599227 + L2 LINE L2 1873 2747 -567 495 212 36 36 chr1 125065271 125065408 -117598945 - MER63 DNA MER1_type -273 789 27 896 232 62 65 chr1 125065426 125065732 -117598621 + L2 LINE L2 3003 3307 -6 293 345 47 38 chr1 125066082 125066401 -117597952 + L2 LINE L2 1562 1883 -1431 230 301 175 10 chr1 125066409 125066512 -117597841 - MIR SINE MIR -141 121 2 313 337 69 29 chr1 125066745 125066920 -117597433 - L2 LINE L2 0 3313 3132 1318 314 232 13 chr1 125066964 125067951 -117596402 + L3 LINE CR1 372 1574 -3 4494 116 58 1 chr1 125068954 125069234 -117595119 - L1PB1 LINE L1 -59 6092 5829 375 23 0 0 chr1 125069234 125069278 -117595075 + (TG)n Simple_repeat Simple_repeat 1 44 0 4494 116 58 1 chr1 125069278 125069791 -117594562 - L1PB1 LINE L1 -322 5829 5254 555 350 31 7 chr1 125070035 125070324 -117594029 + LTR16A LTR ERVL 79 374 -76 4277 233 53 86 chr1 125070537 125071044 -117593309 - L1MEc LINE L1 -2035 4180 3658 1975 116 0 0 chr1 125071044 125071312 -117593041 - AluSq SINE Alu -45 268 1 4277 233 53 86 chr1 125071312 125071700 -117592653 - L1MEc LINE L1 -2557 3658 3259 430 333 0 0 chr1 125071700 125071814 -117592539 + MER81 DNA DNA 1 114 0 4277 233 53 86 chr1 125071814 125073109 -117591244 - L1MEc LINE L1 -2956 3259 1987 311 252 55 55 chr1 125073159 125073286 -117591067 - L1MEc LINE L1 -4380 2016 1890 34924 93 14 15 chr1 125073291 125079516 -117584837 - L1PA6 LINE L1 -2 6166 11 466 284 27 9 chr1 125079657 125079882 -117584471 - L1MEc LINE L1 -5453 943 715 8330 148 11 4 chr1 125079890 125081290 -117583063 + ERVL-B3 LTR ERVL 4340 5750 -14 2623 214 9 30 chr1 125081297 125081861 -117582492 + MLT2B3 LTR ERVL 1 552 -2 254 241 35 23 chr1 125081906 125081993 -117582360 - MLT2F LTR ERVL 0 663 576 663 298 69 17 chr1 125082265 125082478 -117581875 + L1MC5 LINE L1 4108 4309 -1837 279 0 0 0 chr1 125082478 125082509 -117581844 + (TA)n Simple_repeat Simple_repeat 2 32 0 663 298 69 17 chr1 125082509 125083104 -117581249 + L1MC5 LINE L1 4309 4959 -1187 26 0 0 0 chr1 125083251 125083277 -117581076 + AT_rich Low_complexity Low_complexity 1 26 0 662 245 115 7 chr1 125083344 125083622 -117580731 + L1MC5 LINE L1 5264 5571 -2237 473 179 15 67 chr1 125083630 125083764 -117580589 + L1MC5 LINE L1 5793 5919 -1889 23 54 0 0 chr1 125083940 125083977 -117580376 + AT_rich Low_complexity Low_complexity 1 37 0 1272 90 0 28 chr1 125084100 125084278 -117580075 + AluY SINE Alu 139 311 0 2643 90 3 3 chr1 125084477 125084832 -117579521 - THE1A LTR MaLR 0 355 1 11321 101 10 3 chr1 125084832 125086401 -117577952 - THE1A-int LTR MaLR 0 1580 1 2473 114 8 0 chr1 125086401 125086753 -117577600 - THE1A LTR MaLR 0 355 1 2507 222 59 70 chr1 125086777 125087911 -117576442 + L1MC5 LINE L1 6625 7746 -215 189 107 0 0 chr1 125088444 125088472 -117575881 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 244 324 102 19 chr1 125088476 125088584 -117575769 - L2 LINE L2 -15 3298 3182 480 211 95 0 chr1 125089055 125089150 -117575203 - L2 LINE L2 -2 3311 3208 2275 133 5 14 chr1 125089783 125090151 -117574202 + MLT1A1 LTR MaLR 1 365 0 247 269 0 0 chr1 125090263 125090315 -117574038 - L2 LINE L2 0 3313 3262 1697 175 3 21 chr1 125090788 125091079 -117573274 + AluJb SINE Alu 3 288 -24 209 298 105 32 chr1 125092260 125092384 -117571969 + L2 LINE L2 3140 3272 0 371 326 49 0 chr1 125093385 125093529 -117570824 - MIR SINE MIR -43 219 69 13720 127 67 1 chr1 125095299 125097567 -117566786 - Tigger1 DNA MER2_type 0 2418 2 913 219 15 0 chr1 125097943 125098144 -117566209 - MER63A DNA MER1_type -6 204 1 266 263 229 0 chr1 125100139 125100197 -117564156 - MIR SINE MIR 0 262 219 192 97 0 0 chr1 125100197 125100228 -117564125 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 266 263 229 0 chr1 125100228 125100287 -117564066 - MIR SINE MIR -43 219 118 1138 191 68 13 chr1 125100368 125100603 -117563750 - MIR SINE MIR -14 248 1 215 204 74 9 chr1 125101120 125101228 -117563125 + (TA)n Simple_repeat Simple_repeat 1 115 0 1872 218 43 27 chr1 125101479 125102002 -117562351 + MLT1F1 LTR MaLR 34 565 -2 517 311 55 16 chr1 125102014 125102197 -117562156 + MIR SINE MIR 20 209 -53 199 107 0 0 chr1 125102848 125102876 -117561477 - MIR SINE MIR -61 147 120 499 152 0 19 chr1 125103137 125103242 -117561111 + GA-rich Low_complexity Low_complexity 1 103 0 356 245 0 69 chr1 125103425 125103527 -117560826 - MIR SINE MIR -6 256 162 404 347 9 68 chr1 125103624 125103846 -117560507 + MIR SINE MIR 29 237 -25 226 344 184 0 chr1 125104018 125104143 -117560210 + MIR3 SINE MIR 36 183 -25 1988 116 3 7 chr1 125104153 125104437 -117559916 + AluSx SINE Alu 1 283 -29 1655 174 0 0 chr1 125104453 125104763 -117559590 - L1P LINE L1 -928 5218 4909 24 32 0 0 chr1 125104821 125104852 -117559501 + AT_rich Low_complexity Low_complexity 1 31 0 268 365 44 36 chr1 125104933 125105070 -117559283 - L2 LINE L2 -470 2844 2707 2329 85 0 0 chr1 125105071 125105376 -117558977 - AluY SINE Alu -6 305 1 188 298 64 0 chr1 125105500 125105570 -117558783 + MIR SINE MIR 95 166 -42 207 186 0 0 chr1 125105937 125105980 -117558373 + (TG)n Simple_repeat Simple_repeat 1 43 0 198 0 0 0 chr1 125105982 125106004 -117558349 + (TA)n Simple_repeat Simple_repeat 2 23 0 3596 218 72 26 chr1 125106748 125108251 -117556102 + L1MD3 LINE L1 4428 5403 -743 2319 167 43 49 chr1 125107845 125108397 -117555956 + L1MB7 LINE L1 5616 6164 -20 * 197 262 0 0 chr1 125108437 125108479 -117555874 - MIR SINE MIR 0 262 221 35 41 0 0 chr1 125108659 125108708 -117555645 + AT_rich Low_complexity Low_complexity 1 49 0 2340 35 0 3 chr1 125108971 125109257 -117555096 + L1PA4 LINE L1 5868 6152 -3 358 319 6 57 chr1 125109835 125109992 -117554361 - L2 LINE L2 -7 3265 3117 6601 225 25 21 chr1 125110205 125113389 -117550964 - L1MD1 LINE L1 -25 6611 3415 2274 209 11 24 chr1 125113391 125113927 -117550426 - L1MD1 LINE L1 -5995 545 17 210 331 41 25 chr1 125115947 125116068 -117548285 - MIR3 SINE MIR -76 132 10 684 310 28 0 chr1 125117401 125117617 -117546736 + MIR SINE MIR 41 262 0 215 282 59 0 chr1 125118533 125118618 -117545735 + L2 LINE L2 2131 2220 -1094 697 191 148 65 chr1 125118763 125119040 -117545313 + MLT1J1 LTR MaLR 1 300 -146 429 249 103 18 chr1 125119189 125119354 -117544999 - MLT1L LTR MaLR -72 543 365 231 279 74 82 chr1 125119424 125119546 -117544807 - MLT1L LTR MaLR -375 240 120 1500 164 133 27 chr1 125119637 125119967 -117544386 - MLT1A1 LTR MaLR 0 365 1 260 111 22 0 chr1 125120413 125120458 -117543895 + CT-rich Low_complexity Low_complexity 2 47 0 222 326 31 62 chr1 125120650 125120779 -117543574 + L2 LINE L2 3172 3296 -17 607 357 30 0 chr1 125121094 125121293 -117543060 - MIR SINE MIR -50 212 8 288 210 16 16 chr1 125122910 125122972 -117541381 + MIR SINE MIR 107 168 -94 715 272 129 53 chr1 125123095 125123128 -117541225 - L2 LINE L2 0 3313 3284 2377 118 8 8 chr1 125123128 125123483 -117540870 + THE1A LTR MaLR 1 355 0 715 272 129 53 chr1 125123483 125123828 -117540525 - L2 LINE L2 -29 3284 2906 500 246 251 6 chr1 125123887 125124070 -117540283 + MIR SINE MIR 11 238 -24 231 289 67 0 chr1 125124088 125124178 -117540175 + MIR SINE MIR 167 262 0 498 300 36 0 chr1 125125493 125125633 -117538720 + L2 LINE L2 3123 3267 -5 318 328 16 25 chr1 125125686 125125808 -117538545 - MIR SINE MIR -108 154 34 237 200 133 0 chr1 125126423 125126483 -117537870 - MER91C DNA MER1_type -35 105 38 272 269 140 0 chr1 125126578 125126671 -117537682 - MIR SINE MIR -50 212 107 519 282 123 12 chr1 125126697 125126860 -117537493 + MER5A DNA MER1_type 9 189 0 380 313 21 42 chr1 125127458 125127602 -117536751 + MIR SINE MIR 26 166 -96 326 82 0 49 chr1 125127744 125127805 -117536548 - L1PA2 LINE L1 -3 6152 6095 22 0 0 0 chr1 125128327 125128349 -117536004 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr1 125128374 125128415 -117535938 + AT_rich Low_complexity Low_complexity 1 41 0 376 255 122 3 chr1 125128634 125128773 -117535580 - MLT1G1 LTR MaLR -103 492 319 883 88 0 0 chr1 125129141 125129254 -117535099 + AluSq/x SINE Alu 3 115 -197 979 132 36 18 chr1 125129254 125129421 -117534932 + THE1B LTR MaLR 2 171 -193 4297 30 0 0 chr1 125129430 125129925 -117534428 - L1PA5 LINE L1 -11 6143 5649 1560 17 0 0 chr1 125129929 125130103 -117534250 + L1PA5 LINE L1 5446 5619 -536 1235 167 5 33 chr1 125130103 125130318 -117534035 + THE1B LTR MaLR 153 361 -3 1362 110 0 0 chr1 125130318 125130509 -117533844 + AluSc SINE Alu 105 295 -14 896 229 84 26 chr1 125131254 125131481 -117532872 - MIR SINE MIR 0 262 23 696 276 162 52 chr1 125131584 125131986 -117532367 + MLT1K LTR MaLR 143 588 0 226 267 17 0 chr1 125132026 125132086 -117532267 + L3 LINE CR1 1312 1372 -205 423 201 19 58 chr1 125132902 125133056 -117531297 + L1ME LINE L1 5575 5722 -399 1938 252 89 36 chr1 125133239 125133958 -117530395 + L1MC4a LINE L1 5288 6044 -1764 24 32 0 0 chr1 125134252 125134283 -117530070 + AT_rich Low_complexity Low_complexity 1 31 0 207 162 0 0 chr1 125134305 125134342 -117530011 + (CA)n Simple_repeat Simple_repeat 2 38 0 1024 224 30 102 chr1 125134369 125134730 -117529623 + L1MC4 LINE L1 6625 7009 -1002 2586 217 41 25 chr1 125134893 125135494 -117528859 + MLT1G LTR MaLR 1 577 -13 640 332 71 43 chr1 125135554 125135946 -117528407 + L1MC4 LINE L1 7074 7476 -566 439 309 85 38 chr1 125135952 125136376 -117527977 + L1MC5 LINE L1 7334 7777 -184 316 229 169 17 chr1 125136396 125136514 -117527839 + L1MC5 LINE L1 7817 7952 -9 883 185 0 0 chr1 125136641 125136803 -117527550 + AluJb SINE Alu 144 305 -7 209 217 0 0 chr1 125137738 125137784 -117526569 + A-rich Low_complexity Low_complexity 1 46 0 275 305 0 37 chr1 125137870 125137952 -117526401 - L2 LINE L2 0 3272 3194 201 339 0 0 chr1 125138058 125138123 -117526230 - L2 LINE L2 -194 3078 3014 * 701 223 60 27 chr1 125138107 125138291 -117526062 + MIR SINE MIR 68 257 -5 230 377 77 11 chr1 125138351 125138534 -117525819 - L2 LINE L2 -263 3009 2815 182 405 122 0 chr1 125138849 125138980 -117525373 + L2 LINE L2 3167 3313 0 218 379 0 9 chr1 125138996 125139112 -117525241 - L2 LINE L2 -712 2602 2488 874 294 70 13 chr1 125139444 125139760 -117524593 + MLT1J LTR MaLR 135 468 -43 1992 108 44 0 chr1 125139787 125140084 -117524269 - AluSx SINE Alu -2 310 1 229 301 14 14 chr1 125141396 125141469 -117522884 - MER5B DNA MER1_type 0 178 106 717 205 30 12 chr1 125141682 125141984 -117522369 - MLT1A1 LTR MaLR 0 365 2 364 248 50 25 chr1 125142121 125142242 -117522111 + LTR67 LTR ERVL 429 552 -5 238 247 26 39 chr1 125142319 125142396 -117521957 - MIR SINE MIR -29 233 158 234 294 212 34 chr1 125143328 125143474 -117520879 - L2 LINE L2 0 3272 3101 404 304 89 33 chr1 125143776 125143990 -117520363 - MIR SINE MIR -6 256 31 204 344 24 32 chr1 125144354 125144479 -117519874 + L2 LINE L2 3180 3303 -10 294 29 0 0 chr1 125144771 125144806 -117519547 + (CA)n Simple_repeat Simple_repeat 2 36 0 575 252 16 8 chr1 125145363 125145490 -117518863 + L2 LINE L2 3145 3272 0 281 182 0 0 chr1 125145740 125145784 -117518569 + MER3 DNA MER1_type 2 45 -164 * 294 163 0 20 chr1 125145782 125145831 -117518522 + MER3 DNA MER1_type 162 209 0 289 176 0 20 chr1 125145787 125145838 -117518515 - MER3 DNA MER1_type -119 90 41 * 192 325 26 13 chr1 125146197 125146274 -117518079 - MER5A DNA MER1_type -111 78 1 191 308 64 13 chr1 125146530 125146608 -117517745 + L2 LINE L2 3169 3250 -22 409 280 48 32 chr1 125147347 125147472 -117516881 - L2 LINE L2 -1 3271 3145 1714 150 13 29 chr1 125147749 125148056 -117516297 + AluJo SINE Alu 1 302 -10 542 286 176 0 chr1 125148393 125148648 -117515705 - MER5C DNA MER1_type -24 300 1 376 255 99 6 chr1 125148879 125149049 -117515304 - MIR SINE MIR -43 219 40 570 268 52 0 chr1 125150525 125150678 -117513675 - MIR SINE MIR -70 192 32 275 268 71 16 chr1 125151535 125151662 -117512691 + HAL1 LINE L1 329 462 -2045 1122 316 82 48 chr1 125152077 125153046 -117511307 + L2 LINE L2 578 1579 -1735 831 142 6 12 chr1 125153148 125153317 -117511036 + GA-rich Low_complexity Low_complexity 2 169 0 666 301 209 29 chr1 125153330 125154241 -117510112 + L2 LINE L2 1699 2773 -541 709 236 60 65 chr1 125154310 125154467 -117509886 + MIR SINE MIR 32 189 -73 3880 102 9 0 chr1 125154467 125155009 -117509344 + L1PA11 LINE L1 5626 6172 -2 709 236 60 65 chr1 125155009 125155067 -117509286 + MIR SINE MIR 189 246 -16 666 232 18 30 chr1 125155279 125155443 -117508910 - MIR3 SINE MIR -14 194 33 212 265 103 86 chr1 125156812 125156929 -117507424 - MIR3 SINE MIR -54 154 36 517 215 27 44 chr1 125157011 125157156 -117507197 + MLT2C1 LTR ERVL 231 340 -57 216 67 0 0 chr1 125157156 125157186 -117507167 + (A)n Simple_repeat Simple_repeat 1 30 0 619 343 12 25 chr1 125157224 125157469 -117506884 + MIR SINE MIR 1 242 -20 264 329 71 0 chr1 125157819 125157952 -117506401 - MIR SINE MIR -52 156 15 471 223 50 36 chr1 125158279 125158418 -117505935 - MIR SINE MIR -66 196 56 1964 147 0 0 chr1 125158849 125159155 -117505198 - AluJo SINE Alu -6 306 1 249 252 21 12 chr1 125159521 125159602 -117504751 + MIR SINE MIR 99 181 -62 277 281 141 30 chr1 125159996 125160131 -117504222 + L2 LINE L2 3164 3313 0 223 341 111 23 chr1 125160097 125160314 -117504039 + L3b LINE CR1 1287 1522 -61 * 2533 146 25 18 chr1 125160606 125160960 -117503393 - L1PB4 LINE L1 -13 6143 5784 297 0 0 0 chr1 125160960 125160993 -117503360 + (CA)n Simple_repeat Simple_repeat 2 34 0 2533 146 25 18 chr1 125160993 125161078 -117503275 - L1PB4 LINE L1 -372 5784 5701 1910 193 34 0 chr1 125161637 125161990 -117502363 + MLT1A1 LTR MaLR 1 365 0 180 77 0 0 chr1 125163114 125163140 -117501213 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 510 200 64 71 chr1 125163150 125163290 -117501063 - L2 LINE L2 -1 3312 3174 982 203 0 0 chr1 125166173 125166350 -117498003 + MER5B DNA MER1_type 2 178 0 325 302 95 0 chr1 125167513 125167639 -117496714 - MIR3 SINE MIR -47 161 24 271 157 24 96 chr1 125167898 125167981 -117496372 + MER31B LTR ERV1 390 466 0 944 141 147 11 chr1 125167995 125168179 -117496174 - MER3 DNA MER1_type 0 209 1 214 250 0 0 chr1 125168915 125168971 -117495382 + (CA)n Simple_repeat Simple_repeat 1 56 0 293 284 0 0 chr1 125169296 125169363 -117494990 + G-rich Low_complexity Low_complexity 1 67 0 1605 148 98 50 chr1 125170067 125170425 -117493928 - THE1C LTR MaLR 0 375 1 211 200 137 84 chr1 125170787 125170882 -117493471 + MIR3 SINE MIR 109 208 0 6400 160 40 54 chr1 125173051 125173262 -117491091 + L1MC2 LINE L1 7 219 -6207 2059 141 7 3 chr1 125173262 125173566 -117490787 + AluSx SINE Alu 1 305 -7 6400 160 40 54 chr1 125173566 125174348 -117490005 + L1MC2 LINE L1 219 1092 -5334 2103 107 4 0 chr1 125174348 125174619 -117489734 + AluSp SINE Alu 29 300 -13 6400 160 40 54 chr1 125174619 125175184 -117489169 + L1MC2 LINE L1 1092 1664 -4762 1357 149 0 5 chr1 125175184 125175379 -117488974 + AluSx SINE Alu 1 194 -118 650 152 0 0 chr1 125175379 125175478 -117488875 + AluSg/x SINE Alu 151 249 -61 2730 182 116 23 chr1 125175493 125175829 -117488524 + L1MC2 LINE L1 1741 2044 -4563 416 68 68 14 chr1 125175829 125175902 -117488451 - MADE1 DNA Mariner 0 80 4 2730 182 116 23 chr1 125175902 125176442 -117487911 + L1MC2 LINE L1 2044 2734 -3873 1104 198 51 109 chr1 125176444 125176838 -117487515 - MLT1B LTR MaLR -2 388 18 8828 225 53 55 chr1 125176846 125179015 -117485338 + L1MC2 LINE L1 2693 4857 -1569 2489 82 3 0 chr1 125179015 125179321 -117485032 + AluY SINE Alu 1 307 -4 8828 225 53 55 chr1 125179321 125180031 -117484322 + L1MC2 LINE L1 4857 5567 -859 3019 162 71 17 chr1 125180027 125180607 -117483746 + L1MC2 LINE L1 6014 6624 0 * 2482 67 0 3 chr1 125180650 125180949 -117483404 + AluY SINE Alu 1 298 -13 443 221 0 21 chr1 125181096 125181191 -117483162 + MER82 DNA MER2_type 2 94 -559 572 280 28 11 chr1 125181785 125181967 -117482386 + MIR SINE MIR 56 240 -22 431 245 116 0 chr1 125182009 125182156 -117482197 + MER5A DNA MER1_type 26 189 0 1390 180 15 80 chr1 125183251 125183480 -117480873 + MER33 DNA MER1_type 1 204 -2381 1987 129 0 17 chr1 125183480 125183792 -117480561 + AluSx SINE Alu 1 307 0 1390 180 15 80 chr1 125183792 125183900 -117480453 + MER33 DNA MER1_type 204 317 -7 530 216 50 22 chr1 125184707 125184846 -117479507 + MIR SINE MIR 49 191 -71 377 300 69 0 chr1 125185748 125185878 -117478475 + MIR SINE MIR 14 152 -110 362 200 16 128 chr1 125185993 125186118 -117478235 + L2 LINE L2 3137 3247 -25 197 320 128 47 chr1 125186289 125186523 -117477830 - L3b LINE CR1 -202 1381 1129 289 206 48 0 chr1 125187508 125187571 -117476782 - MER77 LTR ERV1 -471 134 69 1990 158 45 35 chr1 125187815 125188215 -117476138 - MER77-int LTR ERV1 -49 4142 3739 593 248 80 71 chr1 125188215 125188453 -117475900 - MER21B LTR ERV1 -240 623 384 324 277 113 21 chr1 125189532 125189673 -117474680 + MIR SINE MIR 12 165 -97 3527 169 9 68 chr1 125189673 125190048 -117474305 + L1MB3 LINE L1 5431 5736 -447 3552 117 29 15 chr1 125190048 125190568 -117473785 - MER1A DNA MER1_type 0 527 1 3527 169 9 68 chr1 125190568 125190990 -117473363 + L1MB3 LINE L1 5736 6181 -2 187 313 100 0 chr1 125191299 125191379 -117472974 + L2 LINE L2 3137 3224 -48 1340 180 66 8 chr1 125192089 125192345 -117472008 - MLT1C LTR MaLR -2 465 195 2242 136 47 8 chr1 125192365 125192726 -117471627 + THE1C LTR MaLR 1 375 0 10633 117 35 3 chr1 125192726 125194257 -117470096 + THE1C-int LTR MaLR 1 1580 0 2092 133 71 8 chr1 125194257 125194610 -117469743 + THE1C LTR MaLR 1 375 0 959 204 25 10 chr1 125194796 125194992 -117469361 - MER58A DNA MER1_type 0 224 26 219 351 53 0 chr1 125197247 125197361 -117466992 + MIR SINE MIR 112 231 -31 225 336 18 18 chr1 125197620 125197733 -117466620 + CT-rich Low_complexity Low_complexity 2 114 0 1159 165 31 16 chr1 125199120 125199314 -117465039 - AluJo SINE Alu -17 295 99 1827 150 125 20 chr1 125199314 125199721 -117464632 - LTR7 LTR ERV1 0 450 1 3592 124 7 4 chr1 125199721 125200276 -117464077 - HERVH LTR ERV1 0 7713 7157 * 5904 142 2 0 chr1 125200269 125201176 -117463177 - HERVH LTR ERV1 -1697 6016 5108 * 15044 180 25 39 chr1 125201175 125205023 -117459330 - HERVH LTR ERV1 -2287 4242 982 728 163 66 12 chr1 125205034 125205200 -117459153 - HERVH LTR ERV1 -7538 175 1 2049 146 96 21 chr1 125205200 125205619 -117458734 - LTR7 LTR ERV1 0 450 1 628 186 0 0 chr1 125205619 125205721 -117458632 - AluJo SINE Alu -209 103 2 197 242 0 48 chr1 125205721 125205783 -117458570 - MIR SINE MIR -36 226 168 1949 252 104 23 chr1 125205788 125206431 -117457922 + Charlie6 DNA MER1_type 1 695 -2805 1286 208 58 41 chr1 125206435 125206848 -117457505 + Charlie6 DNA MER1_type 2628 3047 -453 823 165 0 15 chr1 125206850 125206983 -117457370 + FLAM_C SINE Alu 1 131 -12 35 0 0 0 chr1 125206983 125207018 -117457335 + AT_rich Low_complexity Low_complexity 1 35 0 1463 221 40 21 chr1 125207018 125207394 -117456959 + Charlie6 DNA MER1_type 3037 3419 -81 12455 149 15 23 chr1 125207705 125211142 -117453211 - L1MA3 LINE L1 0 6305 2901 2556 80 0 6 chr1 125212013 125212327 -117452026 + AluSp SINE Alu 1 312 -1 334 164 53 179 chr1 125212336 125212543 -117451810 + L2 LINE L2 3133 3313 0 24 53 0 0 chr1 125212599 125212637 -117451716 + AT_rich Low_complexity Low_complexity 1 38 0 2637 53 0 0 chr1 125213018 125213322 -117451031 + AluY SINE Alu 1 304 -7 1256 212 91 66 chr1 125213589 125214025 -117450328 - MLT1H LTR MaLR -2 540 98 808 242 45 104 chr1 125214857 125215279 -117449074 + L1MC4a LINE L1 5558 5954 -1854 509 139 0 0 chr1 125215288 125215367 -117448986 - L1PA13 LINE L1 0 6163 6085 25 51 0 0 chr1 125215490 125215529 -117448824 + AT_rich Low_complexity Low_complexity 1 39 0 358 298 26 0 chr1 125215571 125215685 -117448668 - LTR67 LTR ERVL 0 557 441 2387 166 53 0 chr1 125216351 125216731 -117447622 + MLT2B2 LTR ERVL 1 400 -115 633 71 26 0 chr1 125216738 125216851 -117447502 + (TCTA)n Simple_repeat Simple_repeat 1 116 0 292 136 0 0 chr1 125216852 125216896 -117447457 + MLT2B2 LTR ERVL 472 515 0 1290 244 22 44 chr1 125216952 125217358 -117446995 - MLT2C1 LTR ERVL 0 397 1 4171 174 1 42 chr1 125217520 125218134 -117446219 - MER44D DNA MER2_type -1882 605 152 5430 81 14 3 chr1 125218134 125218848 -117445505 - LTR30 LTR ERV1 0 722 1 4171 174 1 42 chr1 125218848 125218969 -117445384 - MER44D DNA MER2_type -2335 152 28 428 217 43 22 chr1 125218969 125219061 -117445292 - L2 LINE L2 -27 3286 3193 1763 151 0 30 chr1 125219091 125219396 -117444957 - AluJb SINE Alu -6 306 11 269 115 154 0 chr1 125219822 125219874 -117444479 - MLT2C1 LTR ERVL 0 554 495 237 33 0 0 chr1 125219874 125219904 -117444449 + (CA)n Simple_repeat Simple_repeat 2 31 0 2068 166 35 9 chr1 125219906 125220244 -117444109 - MER7A DNA MER2_type -1 345 1 1773 190 11 35 chr1 125220273 125220647 -117443706 - MLT2C1 LTR ERVL -40 475 1 483 251 61 18 chr1 125220773 125220936 -117443417 + LTR37B LTR ERV1 5 174 -294 962 213 45 24 chr1 125220985 125221287 -117443066 + LTR37B LTR ERV1 131 468 0 218 364 10 10 chr1 125221380 125221479 -117442874 - MIR SINE MIR -105 157 59 704 192 137 0 chr1 125221481 125221627 -117442726 + MER34C LTR ERV1 1 166 -419 4112 140 34 3 chr1 125221628 125222244 -117442109 + MER41B LTR ERV1 1 635 0 183 367 17 0 chr1 125222278 125222338 -117442015 - L3 LINE CR1 -48 1529 1469 1243 212 27 23 chr1 125222370 125222829 -117441524 - LTR29 LTR ERV1 0 644 137 320 339 84 32 chr1 125222946 125223197 -117441156 - L3 LINE CR1 -353 1224 961 4814 94 37 9 chr1 125223889 125224538 -117439815 - PABL_B LTR ERV1 0 667 1 2668 217 100 45 chr1 125224694 125225477 -117438876 + LTR1B LTR ERV1 1 826 0 909 167 0 0 chr1 125225641 125225773 -117438580 - FLAM_C SINE Alu -1 132 1 322 277 99 21 chr1 125226094 125226235 -117438118 - L2 LINE L2 0 3313 3162 1728 168 78 18 chr1 125226248 125226709 -117437644 - LTR49 LTR ERV1 0 622 61 1951 227 63 13 chr1 125226714 125227361 -117436992 + MER50 LTR ERV1 10 725 -9 291 220 8 0 chr1 125227378 125227455 -117436898 - LTR49 LTR ERV1 -507 365 1 2792 121 27 76 chr1 125227572 125228020 -117436333 + LTR24 LTR ERV1 4 428 -39 1679 210 0 3 chr1 125228020 125228311 -117436042 - AluJb SINE Alu -22 290 1 2792 121 27 76 chr1 125228311 125228350 -117436003 + LTR24 LTR ERV1 428 467 0 362 340 26 33 chr1 125228904 125229057 -117435296 - MER5A DNA MER1_type -31 158 7 197 200 0 22 chr1 125229126 125229171 -117435182 - L2 LINE L2 0 3313 3270 261 0 0 0 chr1 125230056 125230085 -117434268 + (TG)n Simple_repeat Simple_repeat 1 29 0 2922 71 6 0 chr1 125230148 125230501 -117433852 - THE1A LTR MaLR 0 355 1 635 208 25 8 chr1 125231004 125231124 -117433229 + MER45 DNA AcHobo 1 122 -56 402 270 145 23 chr1 125231801 125231982 -117432371 - MIR SINE MIR -14 248 39 491 248 57 14 chr1 125232340 125232481 -117431872 - MIR SINE MIR -49 213 67 317 227 133 0 chr1 125232490 125232565 -117431788 - L2 LINE L2 0 3313 3229 752 321 104 17 chr1 125232685 125233156 -117431197 - L2 LINE L2 -342 2972 2461 803 196 0 8 chr1 125233161 125233294 -117431059 - FLAM_A SINE Alu 0 133 2 186 269 0 39 chr1 125233304 125233356 -117430997 - MIR SINE MIR -201 61 12 1626 303 47 4 chr1 125233372 125233858 -117430495 - MLT1J LTR MaLR -4 507 1 3389 150 40 0 chr1 125234029 125234602 -117429751 + L1MB7 LINE L1 5545 6140 -44 1931 93 11 30 chr1 125234603 125234871 -117429482 + AluSq SINE Alu 1 263 -50 882 227 62 5 chr1 125235178 125235372 -117428981 + MLT1A2 LTR MaLR 1 205 -169 555 192 0 0 chr1 125236547 125236646 -117427707 - Charlie8 DNA MER1_type -2216 201 103 200 195 171 0 chr1 125236810 125236851 -117427502 - L2 LINE L2 -2 3311 3264 445 325 61 6 chr1 125237188 125237351 -117427002 - MIR SINE MIR -74 188 17 239 79 26 0 chr1 125237358 125237396 -117426957 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 489 304 36 36 chr1 125238476 125238670 -117425683 + MIR SINE MIR 29 222 -40 34 0 0 0 chr1 125238897 125238931 -117425422 + AT_rich Low_complexity Low_complexity 1 34 0 284 137 0 20 chr1 125239021 125239072 -117425281 - L1MC4 LINE L1 -1339 6703 6654 244 230 138 49 chr1 125239083 125239313 -117425040 - L1MC5 LINE L1 -169 7873 7516 368 379 23 9 chr1 125240701 125240920 -117423433 + L2 LINE L2 1865 2086 -1228 268 229 97 120 chr1 125240963 125241230 -117423123 + L2 LINE L2 2053 2313 -1001 * 286 179 0 107 chr1 125241224 125241308 -117423045 - MIR SINE MIR -9 253 179 1541 184 129 14 chr1 125241320 125241668 -117422685 + MSTD LTR MaLR 9 396 0 1974 158 0 0 chr1 125242003 125242300 -117422053 - AluJb SINE Alu -15 297 1 227 241 17 17 chr1 125242645 125242703 -117421650 + L2 LINE L2 3164 3221 -92 368 339 73 17 chr1 125242802 125243035 -117421318 + MIR SINE MIR 15 260 -2 207 0 0 0 chr1 125244563 125244586 -117419767 + (TTG)n Simple_repeat Simple_repeat 2 24 0 623 154 43 68 chr1 125244591 125244753 -117419600 - L1MC2 LINE L1 -26 6318 6161 291 168 202 17 chr1 125244764 125244883 -117419470 - L1MC2 LINE L1 -107 6237 6097 2385 93 3 0 chr1 125244912 125245224 -117419129 + AluSp SINE Alu 1 313 0 471 224 160 37 chr1 125245473 125245724 -117418629 - MLT1H LTR MaLR 0 555 209 2129 112 3 13 chr1 125245909 125246213 -117418140 + AluSx SINE Alu 4 304 -8 1725 159 3 14 chr1 125247050 125247333 -117417020 + AluJo SINE Alu 9 288 -24 27 0 0 0 chr1 125247455 125247482 -117416871 + AT_rich Low_complexity Low_complexity 1 27 0 845 257 41 115 chr1 125248384 125248750 -117415603 + MER70B LTR ERVL 92 430 -148 262 322 243 3 chr1 125248827 125249128 -117415225 + L2 LINE L2 2048 2420 -894 333 342 98 5 chr1 125249404 125249597 -117414756 + L2 LINE L2 2609 2819 -495 1091 224 9 9 chr1 125249889 125250108 -117414245 + MLT2B1 LTR ERVL 214 432 -88 350 235 0 0 chr1 125250108 125250176 -117414177 - LTR33 LTR ERVL -354 167 100 226 282 56 35 chr1 125250213 125250355 -117413998 + MLT1L LTR MaLR 384 528 -87 247 286 11 22 chr1 125250364 125250455 -117413898 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 589 152 174 61 chr1 125250460 125250592 -117413761 - MSTA LTR MaLR -184 244 96 23 0 0 0 chr1 125250594 125250617 -117413736 + AT_rich Low_complexity Low_complexity 1 23 0 4206 211 21 55 chr1 125250620 125251685 -117412668 + L1MA4 LINE L1 1173 2200 -4649 2057 154 114 35 chr1 125251687 125252040 -117412313 + MSTB LTR MaLR 1 390 -36 1754 152 55 0 chr1 125252040 125252329 -117412024 - AluSx SINE Alu -7 305 1 2057 154 114 35 chr1 125252329 125252370 -117411983 + MSTB LTR MaLR 390 426 0 1833 150 29 4 chr1 125252370 125252650 -117411703 + MSTB LTR MaLR 139 425 -1 4039 203 16 107 chr1 125252652 125254386 -117409967 + L1MA4 LINE L1 2287 3883 -2965 273 146 0 0 chr1 125254467 125254515 -117409838 + (CCG)n Simple_repeat Simple_repeat 3 50 0 206 160 20 0 chr1 125256553 125256603 -117407750 + (TA)n Simple_repeat Simple_repeat 2 52 0 4434 170 20 24 chr1 125257003 125257838 -117406515 + L1MA4 LINE L1 3854 4687 -2161 1843 162 170 19 chr1 125257838 125258209 -117406144 + MSTA LTR MaLR 1 427 -1 4434 170 20 24 chr1 125258209 125258268 -117406085 + L1MA4 LINE L1 4687 4745 -2103 807 197 0 28 chr1 125258278 125258420 -117405933 + FRAM SINE Alu 36 173 -3 5049 144 31 26 chr1 125258424 125259187 -117405166 + L1MA4 LINE L1 6075 6832 -170 1564 144 78 4 chr1 125259187 125259443 -117404910 + AluSx SINE Alu 1 275 -37 201 39 0 0 chr1 125259447 125259473 -117404880 + (TAA)n Simple_repeat Simple_repeat 1 26 0 5049 144 31 26 chr1 125259473 125259625 -117404728 + L1MA4 LINE L1 6834 7000 -2 245 263 18 0 chr1 125259697 125259754 -117404599 + LTR37A LTR ERV1 128 185 -241 464 231 25 0 chr1 125259783 125259904 -117404449 + LTR37A LTR ERV1 297 420 -6 385 266 122 26 chr1 125260214 125260518 -117403835 + MER31-int LTR ERV1 1822 2154 -2782 28 0 0 0 chr1 125260903 125260931 -117403422 + AT_rich Low_complexity Low_complexity 1 28 0 1964 122 44 10 chr1 125261244 125261539 -117402814 + AluSx SINE Alu 1 305 -7 2254 125 0 3 chr1 125261539 125261851 -117402502 + AluSx SINE Alu 1 312 0 283 287 87 67 chr1 125261867 125262017 -117402336 + MER31-int LTR ERV1 2914 3066 -1870 1789 182 7 0 chr1 125262066 125262357 -117401996 + AluJb SINE Alu 1 293 -19 2370 111 44 33 chr1 125262570 125262930 -117401423 + THE1B LTR MaLR 1 364 0 11586 110 11 5 chr1 125262930 125264500 -117399853 + THE1B-int LTR MaLR 1 1580 0 2194 144 42 31 chr1 125264500 125264860 -117399493 + THE1B LTR MaLR 1 364 0 2052 135 138 26 chr1 125265545 125265930 -117398423 - MSTA LTR MaLR 0 428 1 827 247 7 0 chr1 125266113 125266263 -117398090 + FRAM SINE Alu 2 152 -14 21 0 0 0 chr1 125266263 125266284 -117398069 + AT_rich Low_complexity Low_complexity 1 21 0 1377 116 0 16 chr1 125267810 125267999 -117396354 - AluSc SINE Alu -123 186 1 285 236 0 94 chr1 125268001 125268107 -117396246 + MER31-int LTR ERV1 2892 2987 -1949 22 0 0 0 chr1 125268233 125268255 -117396098 + AT_rich Low_complexity Low_complexity 1 22 0 4462 64 11 0 chr1 125268255 125268818 -117395535 - L1PA6 LINE L1 0 6154 5586 1223 276 35 36 chr1 125468828 125469434 -117194919 - HUERS-P2 LTR ERV1 -2462 626 75 337 314 8 25 chr1 125469575 125469693 -117194660 - LTR28 LTR ERV1 -5 1015 900 909 268 75 101 chr1 125469772 125470537 -117193816 - LTR1B LTR ERV1 -81 745 1 1018 177 12 91 chr1 125470541 125470784 -117193569 + MSTB LTR MaLR 79 302 -124 236 244 0 0 chr1 125470907 125470985 -117193368 + L1MC4 LINE L1 6615 6692 -1350 252 0 0 0 chr1 125470988 125471016 -117193337 + (GA)n Simple_repeat Simple_repeat 2 29 0 21 57 0 0 chr1 125471136 125471171 -117193182 + AT_rich Low_complexity Low_complexity 1 35 0 538 104 83 0 chr1 125471365 125471461 -117192892 + L1MB3 LINE L1 6078 6181 -2 273 264 44 22 chr1 125471712 125471803 -117192550 + MLT1H LTR MaLR 454 546 -3 308 333 17 0 chr1 125471877 125471997 -117192356 + L1M4 LINE L1 3356 3477 -2669 38 22 0 0 chr1 125472191 125472236 -117192117 + AT_rich Low_complexity Low_complexity 1 45 0 324 0 0 0 chr1 125473124 125473160 -117191193 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 472 165 24 33 chr1 125473790 125473919 -117190434 - L1M2 LINE L1 -571 5585 5459 252 360 118 7 chr1 125473957 125474093 -117190260 + L2 LINE L2 3114 3264 -8 2142 127 3 0 chr1 125474142 125474442 -117189911 - AluSx SINE Alu -11 301 1 191 261 92 67 chr1 125474574 125474693 -117189660 - L2 LINE L2 -13 3259 3138 42 65 0 0 chr1 125474884 125474961 -117189392 + AT_rich Low_complexity Low_complexity 1 77 0 274 217 14 14 chr1 125474993 125475062 -117189291 - AluY SINE Alu -165 136 68 21 0 0 0 chr1 125475298 125475319 -117189034 + AT_rich Low_complexity Low_complexity 1 21 0 629 168 0 0 chr1 125476349 125476456 -117187897 + MLT1D LTR MaLR 139 245 -260 324 102 0 0 chr1 125476478 125476527 -117187826 + (TG)n Simple_repeat Simple_repeat 1 49 0 623 225 165 34 chr1 125476527 125476754 -117187599 + MLT1D LTR MaLR 188 448 -57 470 295 2 0 chr1 125476767 125476901 -117187452 + MER5A DNA MER1_type 31 166 -12 1037 172 15 33 chr1 125476956 125477253 -117187100 - L1M2 LINE L1 -764 6801 6576 8053 235 63 15 chr1 125477254 125479952 -117184401 - L1M2 LINE L1 -1664 5901 3043 2470 36 0 3 chr1 125479952 125480257 -117184096 - L1PA2 LINE L1 -1 6154 5851 8053 235 63 15 chr1 125480257 125480543 -117183810 - L1M2 LINE L1 -4522 3043 2772 242 71 98 18 chr1 125480554 125480666 -117183687 + (TA)n Simple_repeat Simple_repeat 2 122 0 576 220 107 8 chr1 125480666 125481064 -117183289 + L1M1 LINE L1 3387 3837 -3728 1397 231 82 14 chr1 125481065 125481604 -117182749 - L1M2 LINE L1 -4503 2346 1775 35 92 0 0 chr1 125482066 125482164 -117182189 + AT_rich Low_complexity Low_complexity 1 98 0 27 29 0 0 chr1 125482192 125482226 -117182127 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr1 125482246 125482268 -117182085 + AT_rich Low_complexity Low_complexity 1 22 0 2665 147 12 0 chr1 125482370 125482793 -117181560 + MSTA LTR MaLR 1 428 0 8144 207 17 16 chr1 125482793 125484424 -117179929 + MSTA-int LTR MaLR 1 1633 -18 2277 157 31 14 chr1 125484436 125484857 -117179496 + MSTA LTR MaLR 1 428 0 341 279 36 9 chr1 125485445 125485556 -117178797 - L2 LINE L2 -5 3308 3195 221 290 130 38 chr1 125485555 125485686 -117178667 - MIR SINE MIR -105 157 15 * 300 315 108 0 chr1 125486252 125486382 -117177971 + L2 LINE L2 3169 3312 -1 180 0 0 0 chr1 125486450 125486470 -117177883 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1717 158 7 18 chr1 125486473 125486757 -117177596 - AluSx SINE Alu -31 281 1 2468 68 0 0 chr1 125487758 125488065 -117176288 - AluY SINE Alu -4 307 1 427 306 51 6 chr1 125488722 125488879 -117175474 + MIR SINE MIR 86 249 -13 1518 260 52 21 chr1 125488941 125489521 -117174832 - L1M4 LINE L1 -931 5215 4618 367 143 0 0 chr1 125489540 125489610 -117174743 + L1MA3 LINE L1 6236 6305 0 23 0 0 0 chr1 125489615 125489638 -117174715 + AT_rich Low_complexity Low_complexity 1 23 0 2365 243 57 20 chr1 125489826 125490527 -117173826 + L1ME1 LINE L1 5317 6043 -123 379 242 57 6 chr1 125490531 125490688 -117173665 + L1M4 LINE L1 2203 2367 -3779 4667 206 35 23 chr1 125491274 125492598 -117171755 - L1MC1 LINE L1 -52 6350 5011 297 231 0 13 chr1 125492709 125492787 -117171566 + CT-rich Low_complexity Low_complexity 1 77 0 533 261 23 69 chr1 125492822 125493082 -117171271 - L1MC1 LINE L1 -1992 4223 3976 581 257 34 6 chr1 125493116 125493291 -117171062 - L1MC1 LINE L1 -2452 3763 3584 38 39 0 0 chr1 125493602 125493654 -117170699 + AT_rich Low_complexity Low_complexity 1 52 0 337 265 39 28 chr1 125493686 125493867 -117170486 - L1MC1 LINE L1 -4616 1780 1598 319 110 43 2 chr1 125493897 125494152 -117170201 + AluSg SINE Alu 1 322 0 885 312 62 45 chr1 125494176 125495055 -117169298 - L1MC1 LINE L1 -4720 1495 635 539 210 32 146 chr1 125495059 125495129 -117169224 + MER20 DNA MER1_type 2 78 -141 2331 77 0 3 chr1 125495129 125495426 -117168927 - AluY SINE Alu -15 296 1 539 210 32 146 chr1 125495426 125495574 -117168779 + MER20 DNA MER1_type 78 195 -24 492 334 38 34 chr1 125495638 125495958 -117168395 - L1MC1 LINE L1 -5759 637 317 258 136 0 0 chr1 125496693 125496737 -117167616 + (TG)n Simple_repeat Simple_repeat 2 45 0 288 0 0 0 chr1 125497017 125497049 -117167304 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 345 24 0 0 chr1 125497048 125497090 -117167263 + (GA)n Simple_repeat Simple_repeat 1 42 0 1078 253 111 11 chr1 125497775 125498135 -117166218 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr1 125498574 125498595 -117165758 + AT_rich Low_complexity Low_complexity 1 21 0 410 323 143 20 chr1 125499232 125499526 -117164827 - HAL1b LINE L1 -904 444 115 1914 70 0 0 chr1 125499690 125499932 -117164421 - AluY SINE Alu -23 288 47 1340 135 5 14 chr1 125500172 125500380 -117163973 - AluSg/x SINE Alu -6 304 99 2277 143 57 7 chr1 125500759 125501165 -117163188 + MSTA LTR MaLR 1 426 -2 1992 129 0 3 chr1 125501691 125501980 -117162373 + AluSq SINE Alu 1 289 -20 447 63 0 0 chr1 125501980 125502043 -117162310 + (CATA)n Simple_repeat Simple_repeat 2 64 0 322 314 157 22 chr1 125502196 125502419 -117161934 + MLT1J LTR MaLR 85 337 -174 25 51 0 0 chr1 125502532 125502571 -117161782 + AT_rich Low_complexity Low_complexity 1 39 0 363 272 61 18 chr1 125502973 125503087 -117161266 + L2 LINE L2 3194 3312 -1 * 470 338 38 26 chr1 125503084 125503252 -117161101 - L2 LINE L2 -884 2430 2265 2156 212 20 67 chr1 125503252 125503790 -117160563 + MLT2B2 LTR ERVL 3 515 0 470 338 38 26 chr1 125503790 125503961 -117160392 - L2 LINE L2 -1049 2265 2087 23 0 0 0 chr1 125504642 125504665 -117159688 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr1 125504740 125504763 -117159590 + (CA)n Simple_repeat Simple_repeat 2 24 0 2072 191 34 24 chr1 125504784 125505248 -117159105 + L1MB2 LINE L1 5679 6150 -21 494 246 86 4 chr1 125505304 125505548 -117158805 + L1M4 LINE L1 2741 3004 -3142 1971 202 97 36 chr1 125505570 125506150 -117158203 + L1MA7 LINE L1 5677 6291 0 24 32 0 0 chr1 125506190 125506221 -117158132 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr1 125506253 125506284 -117158069 + AT_rich Low_complexity Low_complexity 1 31 0 198 71 0 0 chr1 125506483 125506511 -117157842 + (TG)n Simple_repeat Simple_repeat 2 29 0 203 233 146 48 chr1 125507982 125508085 -117156268 - L2 LINE L2 -21 3292 3180 640 303 20 5 chr1 125508324 125508519 -117155834 - MIR SINE MIR -4 258 61 28 61 0 0 chr1 125508670 125508719 -117155634 + AT_rich Low_complexity Low_complexity 1 49 0 182 273 0 0 chr1 125508733 125508777 -117155576 - L2 LINE L2 -20 3252 3209 418 309 131 0 chr1 125508896 125509071 -117155282 + MIR SINE MIR 65 262 0 26 30 0 0 chr1 125509553 125509586 -117154767 + AT_rich Low_complexity Low_complexity 1 33 0 1570 105 0 4 chr1 125509838 125510076 -117154277 + L1PA13 LINE L1 5923 6159 -4 4462 190 44 34 chr1 125510935 125512489 -117151864 - L1PA16 LINE L1 0 6166 4604 4309 249 26 40 chr1 125512561 125514148 -117150205 + L1 LINE L1 2688 4252 -1894 * 8030 160 49 10 chr1 125514143 125515559 -117148794 - THE1-int LTR MaLR -15 1565 95 280 98 82 16 chr1 125515554 125515615 -117148738 - MST-int LTR MaLR -1496 155 91 * 257 85 136 0 chr1 125515654 125515713 -117148640 - THE1-int LTR MaLR -1414 166 100 333 55 91 0 chr1 125515713 125515768 -117148585 - MST-int LTR MaLR -1496 155 96 310 100 60 0 chr1 125515769 125515819 -117148534 - THE1C-int LTR MaLR -1428 152 100 821 126 0 0 chr1 125515819 125515946 -117148407 - THE1C-int LTR MaLR -1424 156 30 2572 109 22 3 chr1 125515963 125516331 -117148022 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr1 125516720 125516748 -117147605 + AT_rich Low_complexity Low_complexity 1 28 0 184 215 11 11 chr1 125517035 125517128 -117147225 + (TA)n Simple_repeat Simple_repeat 2 94 0 32 26 0 0 chr1 125518741 125518780 -117145573 + AT_rich Low_complexity Low_complexity 1 39 0 2219 138 27 14 chr1 125518936 125519306 -117145047 - THE1C LTR MaLR 0 375 1 8793 152 42 14 chr1 125519306 125520843 -117143510 - THE1C-int LTR MaLR 0 1580 1 2135 154 30 8 chr1 125520843 125521207 -117143146 - THE1C LTR MaLR 0 375 4 322 336 55 42 chr1 125521505 125521907 -117142446 - MLT1I LTR MaLR 0 409 3 21 0 0 0 chr1 125522428 125522449 -117141904 + AT_rich Low_complexity Low_complexity 1 21 0 319 263 13 0 chr1 125522898 125522974 -117141379 - MLT1I LTR MaLR -10 399 323 2363 93 0 0 chr1 125522979 125523290 -117141063 - AluY SINE Alu 0 311 1 21 36 0 0 chr1 125524127 125524155 -117140198 + AT_rich Low_complexity Low_complexity 1 28 0 6339 51 2 0 chr1 125525346 125526135 -117138218 - L1PA4 LINE L1 -45 6110 5320 195 293 0 17 chr1 125526652 125526710 -117137643 - L2 LINE L2 -2 3311 3255 1390 238 34 3 chr1 125529124 125529502 -117134851 + L1M4 LINE L1 4254 4643 -1503 3117 42 3 0 chr1 125529508 125529889 -117134464 - L1PA3 LINE L1 -5 6150 5769 1350 148 43 12 chr1 125529943 125530199 -117134154 + L1MA8 LINE L1 6011 6274 -17 34 42 0 0 chr1 125530974 125531022 -117133331 + AT_rich Low_complexity Low_complexity 1 48 0 985 195 26 0 chr1 125531408 125531603 -117132750 + MLT1C LTR MaLR 268 467 0 254 0 87 0 chr1 125531905 125531951 -117132402 + (TA)n Simple_repeat Simple_repeat 1 50 0 11985 208 48 12 chr1 125532067 125534290 -117130063 + L1M2 LINE L1 2322 4464 -1740 1780 146 0 4 chr1 125534290 125534564 -117129789 + AluSx SINE Alu 3 275 -37 254 29 29 0 chr1 125534568 125534603 -117129750 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 11985 208 48 12 chr1 125534603 125534701 -117129652 + L1M2 LINE L1 4466 4559 -1645 4375 101 57 1 chr1 125534701 125535353 -117129000 + LTR12 LTR ERV1 1 688 0 11985 208 48 12 chr1 125535353 125536050 -117128303 + L1M2 LINE L1 4559 5453 -751 920 145 6 0 chr1 125536065 125536224 -117128129 + L1MA6 LINE L1 6140 6299 -1 271 266 43 86 chr1 125536299 125536378 -117127975 + L1ME2 LINE L1 6005 6077 -87 1869 250 33 11 chr1 125536378 125536838 -117127515 - MER70A LTR ERVL -2 470 1 271 266 43 86 chr1 125536838 125536897 -117127456 + L1ME2 LINE L1 6077 6137 -27 31 82 0 0 chr1 125537212 125537285 -117127068 + AT_rich Low_complexity Low_complexity 1 73 0 264 281 140 18 chr1 125538703 125538817 -117125536 - L2 LINE L2 -9 3304 3177 2394 119 30 0 chr1 125539008 125539377 -117124976 + L1PA11 LINE L1 5790 6169 -5 225 253 25 38 chr1 125539879 125539958 -117124395 - L2 LINE L2 -952 2362 2285 9186 156 81 23 chr1 125540624 125543390 -117120963 + L1PB1 LINE L1 4 3086 -3776 1351 109 0 10 chr1 125543398 125543600 -117120753 - L1P LINE L1 -4115 2031 1832 * 8673 31 1 1 chr1 125543597 125544664 -117119689 - L1PA3 LINE L1 -746 5400 4334 6500 26 1 0 chr1 125544664 125545427 -117118926 + L1PA3 LINE L1 5391 6155 0 3654 82 2 2 chr1 125545452 125545950 -117118403 - L1P LINE L1 -4304 1842 1345 * 25020 56 9 1 chr1 125545937 125550002 -117114351 + L1PA5 LINE L1 2048 6147 -7 12631 211 16 10 chr1 125550020 125553421 -117110932 + L1PB1 LINE L1 3083 6507 -360 241 172 16 31 chr1 125553429 125553493 -117110860 + (TA)n Simple_repeat Simple_repeat 2 64 0 882 218 38 0 chr1 125553494 125553705 -117110648 + L1 LINE L1 3905 4123 -2023 288 253 0 0 chr1 125553702 125553785 -117110568 - L1MC4 LINE L1 -1346 6696 6614 * 226 127 18 18 chr1 125553804 125553859 -117110494 - LTR66 LTR ERVL -174 436 382 216 200 0 0 chr1 125553861 125553911 -117110442 + (CATATA)n Simple_repeat Simple_repeat 6 55 0 2220 136 3 3 chr1 125553911 125554272 -117110081 + L1PB1 LINE L1 6507 6867 0 4648 218 46 27 chr1 125554281 125556442 -117107911 + L1MB1 LINE L1 3961 6168 0 378 325 126 43 chr1 125556703 125557140 -117107213 + L1ME LINE L1 529 1001 -5069 499 259 45 15 chr1 125557151 125557352 -117107001 + L1ME3 LINE L1 5934 6140 -22 1995 122 11 0 chr1 125557447 125557734 -117106619 - AluSx SINE Alu -22 290 1 21 57 0 0 chr1 125558638 125558673 -117105680 + AT_rich Low_complexity Low_complexity 1 35 0 1846 158 46 3 chr1 125559062 125559391 -117104962 - MER61A LTR ERV1 0 343 1 452 301 92 68 chr1 125559684 125560066 -117104287 - MLT1L LTR MaLR -3 612 222 1951 141 51 25 chr1 125560195 125560550 -117103803 - THE1B LTR MaLR 0 364 1 11144 108 4 2 chr1 125560550 125562126 -117102227 - THE1B-int LTR MaLR 0 1580 1 2012 120 52 60 chr1 125562126 125562493 -117101860 - THE1B LTR MaLR 0 364 1 309 325 53 20 chr1 125563016 125563167 -117101186 - L2 LINE L2 -2 3311 3156 2987 150 78 0 chr1 125563187 125563701 -117100652 + MER41C LTR ERV1 1 554 0 192 277 138 11 chr1 125563756 125563850 -117100503 - MIR SINE MIR -45 217 112 576 334 85 24 chr1 125563957 125564298 -117100055 - L2 LINE L2 -445 2869 2508 374 293 94 28 chr1 125564463 125564644 -117099709 + MLT1K LTR MaLR 307 499 -89 322 327 0 0 chr1 125564767 125564871 -117099482 + MIR SINE MIR 95 198 -64 272 296 196 31 chr1 125565733 125565993 -117098360 + L2 LINE L2 2929 3231 -82 24 53 0 0 chr1 125566085 125566123 -117098230 + AT_rich Low_complexity Low_complexity 1 38 0 328 83 0 0 chr1 125566133 125566181 -117098172 - L1MD1 LINE L1 -15 6227 6180 2186 78 0 0 chr1 125566449 125566757 -117097596 + AluY SINE Alu 1 308 0 1429 171 18 18 chr1 125566830 125567144 -117097209 + AluSx SINE Alu 3 316 0 708 292 121 43 chr1 125567399 125567521 -117096832 - L2 LINE L2 -4 3309 3198 252 0 0 0 chr1 125567521 125567549 -117096804 + (CA)n Simple_repeat Simple_repeat 2 29 0 708 292 121 43 chr1 125567549 125568074 -117096279 - L2 LINE L2 -115 3198 2616 21 0 0 0 chr1 125568692 125568713 -117095640 + AT_rich Low_complexity Low_complexity 1 21 0 452 273 16 0 chr1 125569246 125569374 -117094979 - MIR SINE MIR -5 257 128 658 322 62 42 chr1 125569377 125570034 -117094319 + L2 LINE L2 2644 3313 0 603 241 0 15 chr1 125570137 125570270 -117094083 + MLT1A1 LTR MaLR 235 365 0 813 11 0 0 chr1 125571746 125571841 -117092512 + L1PA4 LINE L1 6058 6152 -3 1482 207 65 41 chr1 125571914 125572330 -117092023 + MER31A LTR ERV1 17 442 -43 433 229 0 19 chr1 125572691 125572796 -117091557 - MIR SINE MIR -31 231 129 609 148 0 0 chr1 125574590 125574730 -117089623 + AluSg/x SINE Alu 202 341 0 1580 163 36 24 chr1 125574901 125575238 -117089115 + L1MA4A LINE L1 5782 6122 -181 456 180 22 0 chr1 125575243 125575332 -117089021 + L1MA4A LINE L1 6190 6280 -23 296 213 0 0 chr1 125575363 125575424 -117088929 - LTR33 LTR ERVL -453 68 8 1000 358 104 17 chr1 125575453 125576171 -117088182 + L2 LINE L2 2295 3074 -239 28 61 0 0 chr1 125576258 125576307 -117088046 + AT_rich Low_complexity Low_complexity 1 49 0 2146 111 14 0 chr1 125576923 125577211 -117087142 + AluSx SINE Alu 3 294 -18 22 35 0 0 chr1 125578279 125578308 -117086045 + AT_rich Low_complexity Low_complexity 1 29 0 464 169 0 0 chr1 125578384 125578461 -117085892 + MSTB LTR MaLR 1 77 -351 381 244 30 104 chr1 125578463 125578627 -117085726 - LTR28 LTR ERV1 0 1020 869 1477 209 73 129 chr1 125578656 125579445 -117084908 - LTR1B LTR ERV1 -81 745 1 2069 171 12 0 chr1 125579447 125579787 -117084566 - LTR1B-int LTR ERV1 -1 7090 6747 3951 163 8 2 chr1 125579794 125580433 -117083920 - LTR1B-int LTR ERV1 -501 6590 5948 972 139 33 0 chr1 125580417 125580568 -117083785 - LTR1B-int LTR ERV1 -2326 4765 4610 * 11213 198 16 11 chr1 125580618 125582705 -117081648 - HUERS-P2 LTR ERV1 -417 2671 575 1480 259 69 21 chr1 125582733 125583321 -117081032 - HUERS-P2 LTR ERV1 -2501 603 169 258 180 0 20 chr1 125583388 125583438 -117080915 - HUERS-P2 LTR ERV1 -7037 54 6 1671 219 104 130 chr1 125583441 125584405 -117079948 - LTR1B LTR ERV1 0 1020 1 1413 164 101 71 chr1 125584409 125584745 -117079608 + MSTB LTR MaLR 79 424 -2 736 311 161 29 chr1 125585769 125586351 -117078002 + LTR41 LTR ERVL 1 659 -114 1704 243 30 26 chr1 125586608 125587107 -117077246 - MLT1D LTR MaLR -4 501 1 1475 348 42 25 chr1 125587170 125587932 -117076421 + ERVL LTR ERVL 2616 3390 -2374 1318 332 37 33 chr1 125587984 125588671 -117075682 + ERVL LTR ERVL 4520 5213 -551 210 37 0 0 chr1 125588671 125588698 -117075655 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 1318 332 37 33 chr1 125588698 125588922 -117075431 + ERVL LTR ERVL 5213 5435 -329 563 255 101 84 chr1 125588967 125589335 -117075018 + LTR41 LTR ERVL 386 759 -14 380 333 48 6 chr1 125589349 125589517 -117074836 - L1M4 LINE L1 -2280 3866 3692 2342 125 2 23 chr1 125589541 125589934 -117074419 + LOR1a-int LTR ERV1 912 1296 -6824 21764 138 41 24 chr1 125589966 125591286 -117073067 + LOR1a-int LTR ERV1 1394 2691 -5429 1780 173 3 0 chr1 125591286 125591607 -117072746 - AluSx SINE Alu 0 324 3 21764 138 41 24 chr1 125591607 125594349 -117070004 + LOR1a-int LTR ERV1 2691 5524 -2596 1645 116 16 0 chr1 125594348 125594598 -117069755 + LOR1a-int LTR ERV1 5809 6062 -2058 * 633 141 0 0 chr1 125594598 125594690 -117069663 + LOR1a-int LTR ERV1 8029 8120 0 244 138 172 0 chr1 125594690 125594748 -117069605 + LOR1a LTR ERV1 1 68 -429 2555 148 2 0 chr1 125594773 125595184 -117069169 + L1PA11 LINE L1 5760 6171 -3 1632 165 4 11 chr1 125595225 125595525 -117068828 - AluSx SINE Alu 0 312 21 29 60 0 0 chr1 125595539 125595589 -117068764 + AT_rich Low_complexity Low_complexity 1 50 0 1307 170 5 9 chr1 125595740 125595958 -117068395 - AluSq SINE Alu -76 237 21 22 80 0 0 chr1 125595972 125596022 -117068331 + AT_rich Low_complexity Low_complexity 1 50 0 30 69 0 0 chr1 125596503 125596561 -117067792 + AT_rich Low_complexity Low_complexity 1 58 0 24 32 0 0 chr1 125596661 125596692 -117067661 + AT_rich Low_complexity Low_complexity 1 31 0 529 199 162 7 chr1 125596692 125596828 -117067525 + MER58B DNA MER1_type 168 324 -17 249 148 37 0 chr1 125598820 125598901 -117065452 + (TA)n Simple_repeat Simple_repeat 2 85 0 396 286 78 99 chr1 125599269 125599702 -117064651 + L1M4 LINE L1 532 955 -5587 935 254 119 14 chr1 125599717 125600205 -117064148 + L1M4 LINE L1 925 1463 -5079 24 32 0 0 chr1 125602010 125602041 -117062312 + AT_rich Low_complexity Low_complexity 1 31 0 2384 65 0 0 chr1 125604289 125604623 -117059730 + AluY SINE Alu 1 334 0 1992 264 42 57 chr1 125604625 125605026 -117059327 + L1ME1 LINE L1 5322 5728 -438 1772 229 68 55 chr1 125605026 125605572 -117058781 - MLT2B3 LTR ERVL 0 554 2 1992 264 42 57 chr1 125605572 125606023 -117058330 + L1ME1 LINE L1 5728 6161 -5 665 254 65 29 chr1 125606507 125606782 -117057571 - AluJo SINE Alu -13 289 5 789 286 107 20 chr1 125607467 125607970 -117056383 - MLT1E LTR MaLR 0 593 14 1047 208 14 10 chr1 125608050 125608257 -117056096 - MLT1A1 LTR MaLR 0 365 158 25 51 0 0 chr1 125608275 125608314 -117056039 + AT_rich Low_complexity Low_complexity 1 39 0 11604 129 15 49 chr1 125608581 125608974 -117055379 + L1PA7 LINE L1 15 420 -6041 195 42 0 0 chr1 125608974 125608998 -117055355 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 11604 129 15 49 chr1 125608998 125611203 -117053150 + L1PA7 LINE L1 420 2625 -3836 19592 97 6 3 chr1 125611222 125614933 -117049420 + L1PA7 LINE L1 2788 6493 0 2297 85 0 3 chr1 125614960 125615255 -117049098 - AluY SINE Alu -17 294 1 373 100 29 29 chr1 125615304 125615374 -117048979 - L1MA3 LINE L1 0 6305 6236 356 328 22 35 chr1 125616644 125616876 -117047477 - MLT1J LTR MaLR -253 258 30 245 111 0 0 chr1 125616908 125616944 -117047409 + L1M4 LINE L1 3798 3833 -2313 592 341 67 3 chr1 125616978 125617292 -117047061 + L2 LINE L2 1174 1507 -1807 265 290 0 0 chr1 125617348 125617410 -117046943 + L2 LINE L2 2157 2218 -1096 320 324 68 17 chr1 125618224 125618400 -117045953 - L2 LINE L2 -12 3301 3117 1605 187 3 14 chr1 125618420 125618703 -117045650 - AluJo SINE Alu -28 284 5 207 0 0 0 chr1 125619546 125619569 -117044784 + (TA)n Simple_repeat Simple_repeat 2 24 0 30 59 0 0 chr1 125619807 125619858 -117044495 + AT_rich Low_complexity Low_complexity 1 51 0 5184 196 128 69 chr1 125620030 125621737 -117042616 + L1PA16 LINE L1 46 2092 -4757 4826 204 19 25 chr1 125621710 125623750 -117040603 + L1PA16 LINE L1 4847 6866 -3 * 21 57 0 0 chr1 125624427 125624462 -117039891 + AT_rich Low_complexity Low_complexity 1 35 0 757 198 6 0 chr1 125624788 125624945 -117039408 + L1MA10 LINE L1 6174 6331 -3 1660 168 0 20 chr1 125624956 125625272 -117039081 + AluSx SINE Alu 1 310 0 23 0 0 0 chr1 125625390 125625413 -117038940 + AT_rich Low_complexity Low_complexity 1 23 0 1780 219 30 0 chr1 125625413 125625759 -117038594 - L1PB4 LINE L1 -12 6144 5783 249 83 0 0 chr1 125625759 125625795 -117038558 + (TG)n Simple_repeat Simple_repeat 2 37 0 1780 219 30 0 chr1 125625795 125625850 -117038503 - L1PB4 LINE L1 -373 5783 5731 1823 179 43 7 chr1 125625851 125626493 -117037860 + L1P5 LINE L1 4881 5543 -613 30 0 0 0 chr1 125626516 125626546 -117037807 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr1 125626712 125626740 -117037613 + AT_rich Low_complexity Low_complexity 1 28 0 237 271 47 0 chr1 125626964 125627049 -117037304 + MLT1J1 LTR MaLR 71 159 -287 292 287 29 22 chr1 125627130 125627266 -117037087 + CT-rich Low_complexity Low_complexity 3 139 0 1329 232 35 62 chr1 125627415 125627850 -117036503 - MER39 LTR ERV1 -25 682 260 249 280 30 30 chr1 125627824 125627924 -117036429 - LTR48B LTR ERV1 -544 100 1 * 201 266 0 16 chr1 125628956 125629020 -117035333 + T-rich Low_complexity Low_complexity 3 65 0 10047 172 24 15 chr1 125629193 125632334 -117032019 + L1MA1 LINE L1 3133 6302 0 272 200 88 0 chr1 125632354 125632434 -117031919 + L1ME LINE L1 5346 5432 -732 1514 246 22 80 chr1 125632479 125633043 -117031310 + MLT1F LTR MaLR 1 577 -13 343 309 24 8 chr1 125633043 125633169 -117031184 + L1ME LINE L1 5509 5636 -534 328 301 23 38 chr1 125633190 125633323 -117031030 + L1ME LINE L1 5684 5814 -348 299 259 54 54 chr1 125633760 125633907 -117030446 - MIR SINE MIR -2 260 114 193 256 0 0 chr1 125634051 125634094 -117030259 - MIR SINE MIR -214 48 6 21 36 0 0 chr1 125634949 125634977 -117029376 + AT_rich Low_complexity Low_complexity 1 28 0 340 91 30 0 chr1 125635164 125635230 -117029123 + (TA)n Simple_repeat Simple_repeat 2 69 0 1587 93 0 5 chr1 125635282 125635496 -117028857 - AluSg/x SINE Alu -14 298 86 24 32 0 0 chr1 125635558 125635589 -117028764 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr1 125636394 125636422 -117027931 + AT_rich Low_complexity Low_complexity 1 28 0 2473 193 43 24 chr1 125637861 125638004 -117026349 + L1MC3 LINE L1 5709 5848 -1937 1878 121 52 7 chr1 125638004 125638293 -117026060 + AluSx SINE Alu 1 302 -10 2473 193 43 24 chr1 125638293 125638734 -117025619 + L1MC3 LINE L1 5848 7772 -13 24 32 0 0 chr1 125640120 125640151 -117024202 + AT_rich Low_complexity Low_complexity 1 31 0 535 338 26 13 chr1 125641283 125641514 -117022839 - MIR SINE MIR -26 236 3 30 93 0 0 chr1 125642096 125642182 -117022171 + AT_rich Low_complexity Low_complexity 1 86 0 919 45 0 0 chr1 125642371 125642481 -117021872 + L1P LINE L1 3778 3887 -2259 228 215 15 15 chr1 125642523 125642588 -117021765 + T-rich Low_complexity Low_complexity 1 65 0 21 82 0 0 chr1 125642596 125642645 -117021708 + AT_rich Low_complexity Low_complexity 1 49 0 298 350 28 44 chr1 125643020 125643200 -117021153 + L3 LINE CR1 659 835 -742 1213 42 12 0 chr1 125643418 125643585 -117020768 - L1P LINE L1 -727 5428 5260 5718 12 0 0 chr1 125643585 125644257 -117020096 + L1PA2 LINE L1 5498 6175 0 187 342 95 58 chr1 125645557 125646053 -117018300 - L2 LINE L2 -831 2483 1948 3051 22 3 0 chr1 125646053 125646411 -117017942 + L1PA4 LINE L1 5794 6152 -3 187 342 95 58 chr1 125646411 125646669 -117017684 - L2 LINE L2 -1366 1948 1701 23 78 0 0 chr1 125646771 125646822 -117017531 + AT_rich Low_complexity Low_complexity 1 51 0 6553 206 31 11 chr1 125646926 125648245 -117016108 + ERVL LTR ERVL 3823 5168 -596 1348 208 125 6 chr1 125648434 125648761 -117015592 - MER47A DNA MER2_type 0 366 1 29 60 0 0 chr1 125649982 125650032 -117014321 + AT_rich Low_complexity Low_complexity 1 50 0 291 93 0 0 chr1 125650810 125650853 -117013500 + (CATA)n Simple_repeat Simple_repeat 2 44 0 390 115 0 0 chr1 125652010 125652071 -117012282 + (TG)n Simple_repeat Simple_repeat 2 62 0 219 389 66 25 chr1 125652801 125652999 -117011354 - L2 LINE L2 -431 2883 2678 2480 181 52 52 chr1 125653004 125653605 -117010748 + MER7C DNA MER2_type 2 602 0 397 350 104 45 chr1 125653795 125654353 -117010000 - L2 LINE L2 -1515 1799 1209 598 224 11 34 chr1 125656850 125657029 -117007324 + L1ME3A LINE L1 5744 5918 -252 22 35 0 0 chr1 125657037 125657066 -117007287 + AT_rich Low_complexity Low_complexity 1 29 0 4555 177 48 26 chr1 125657108 125657861 -117006492 - L1PA16 LINE L1 -9 6157 5422 793 450 132 4 chr1 125657861 125658119 -117006234 - AluSc SINE Alu -8 291 1 4555 177 48 26 chr1 125658119 125658271 -117006082 - L1PA16 LINE L1 -744 5422 5275 1523 208 19 24 chr1 125658271 125658646 -117005707 - THE1C LTR MaLR 0 375 3 4555 177 48 26 chr1 125658646 125659228 -117005125 - L1PA16 LINE L1 -891 5275 4645 23 33 0 0 chr1 125659399 125659429 -117004924 + AT_rich Low_complexity Low_complexity 1 30 0 454 43 29 0 chr1 125659560 125659629 -117004724 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 24 53 0 0 chr1 125659920 125659958 -117004395 + AT_rich Low_complexity Low_complexity 1 38 0 274 328 57 33 chr1 125660664 125660786 -117003567 - MER5B DNA MER1_type -51 127 3 325 312 83 0 chr1 125661625 125661734 -117002619 - MER5B DNA MER1_type -2 176 59 24 0 0 0 chr1 125662992 125663016 -117001337 + AT_rich Low_complexity Low_complexity 1 24 0 2821 192 8 5 chr1 125663019 125663618 -117000735 + L1MA1 LINE L1 4710 5310 -847 487 158 0 0 chr1 125663619 125663701 -117000652 - L1P LINE L1 -1123 5023 4942 * 6268 119 27 5 chr1 125663698 125664670 -116999683 + L1MA1 LINE L1 5310 6302 0 23 33 0 0 chr1 125664670 125664700 -116999653 + AT_rich Low_complexity Low_complexity 1 30 0 688 324 78 17 chr1 125664974 125665320 -116999033 - L2 LINE L2 -488 2826 2460 332 328 88 21 chr1 125665777 125665969 -116998384 + L1ME1 LINE L1 1399 1603 -4823 1552 257 65 30 chr1 125665973 125666681 -116997672 + L1ME1 LINE L1 1775 2507 -4100 479 196 57 57 chr1 125666688 125666846 -116997507 + L1ME1 LINE L1 5205 5362 -1064 780 233 90 29 chr1 125666918 125667223 -116997130 + L1ME1 LINE L1 5509 5832 -614 528 283 43 62 chr1 125667226 125667530 -116996823 + L1ME1 LINE L1 6143 6440 -6 21 0 0 0 chr1 125667863 125667884 -116996469 + AT_rich Low_complexity Low_complexity 1 21 0 274 213 13 40 chr1 125669352 125669427 -116994926 - MER52C LTR ERV1 0 1278 1206 * 5683 182 127 60 chr1 125669420 125670911 -116993442 - MER52A LTR ERV1 -164 1591 1 2507 56 0 3 chr1 125671416 125671722 -116992631 - AluY SINE Alu -6 305 1 25 65 0 0 chr1 125672007 125672053 -116992300 + AT_rich Low_complexity Low_complexity 1 46 0 1041 258 72 33 chr1 125672059 125672450 -116991903 - L1MC4a LINE L1 -14 7794 7389 439 129 54 0 chr1 125672630 125672723 -116991630 - L1PA16 LINE L1 -6 6160 6063 876 235 5 33 chr1 125672723 125672936 -116991417 - AluJo SINE Alu -101 211 5 24 32 0 0 chr1 125673166 125673197 -116991156 + AT_rich Low_complexity Low_complexity 1 31 0 1807 180 73 0 chr1 125674072 125674388 -116989965 + MER1B DNA MER1_type 1 339 0 25 31 0 0 chr1 125674590 125674622 -116989731 + AT_rich Low_complexity Low_complexity 1 32 0 235 346 16 16 chr1 125674778 125674905 -116989448 + MLT1G1 LTR MaLR 230 356 -239 34 42 0 0 chr1 125675369 125675417 -116988936 + AT_rich Low_complexity Low_complexity 1 48 0 306 324 16 49 chr1 125676815 125677000 -116987353 + L1MEc LINE L1 299 477 -5919 249 202 45 22 chr1 125677407 125677496 -116986857 + (TA)n Simple_repeat Simple_repeat 2 92 0 426 282 178 0 chr1 125677498 125677700 -116986653 - L1M4 LINE L1 -2032 4114 3877 313 213 88 37 chr1 125677702 125677838 -116986515 - L1MEc LINE L1 -5235 1161 1019 236 257 30 10 chr1 125677841 125677942 -116986411 + (TA)n Simple_repeat Simple_repeat 2 104 0 1770 288 106 16 chr1 125677999 125678833 -116985520 - L1MEc LINE L1 -5453 943 35 3305 107 18 47 chr1 125679464 125680015 -116984338 - L1PA14 LINE L1 -2 6159 5625 600 260 47 5 chr1 125681806 125681998 -116982355 + MER3 DNA MER1_type 10 209 0 22 0 0 0 chr1 125682203 125682225 -116982128 + AT_rich Low_complexity Low_complexity 1 22 0 241 170 21 0 chr1 125682273 125682320 -116982033 - LTR67 LTR ERVL -18 539 492 1679 250 118 93 chr1 125682333 125683369 -116980984 + MER69B DNA AcHobo 2 1070 -1456 1794 112 15 0 chr1 125683369 125683629 -116980724 - AluSq SINE Alu -9 304 41 1679 250 118 93 chr1 125683629 125683723 -116980630 + MER69B DNA AcHobo 1070 1160 -66 537 345 84 26 chr1 125684297 125684726 -116979627 + L2 LINE L2 1640 2093 -1221 246 105 0 0 chr1 125684745 125684783 -116979570 + (CA)n Simple_repeat Simple_repeat 2 39 0 267 125 0 0 chr1 125684943 125684983 -116979370 - MLT1B LTR MaLR -39 351 312 206 191 0 24 chr1 125686920 125686962 -116977391 + (TA)n Simple_repeat Simple_repeat 1 41 0 25 65 0 0 chr1 125686988 125687034 -116977319 + AT_rich Low_complexity Low_complexity 1 46 0 187 423 16 8 chr1 125687292 125687415 -116976938 + L2 LINE L2 2650 2773 -541 26 0 0 0 chr1 125689047 125689073 -116975280 + AT_rich Low_complexity Low_complexity 1 26 0 342 183 0 0 chr1 125689188 125689259 -116975094 + GA-rich Low_complexity Low_complexity 2 72 0 2208 85 0 0 chr1 125689315 125689598 -116974755 + AluSg SINE Alu 4 286 -24 349 306 52 17 chr1 125689693 125689866 -116974487 + L1M4c LINE L1 1283 1461 -4923 1201 178 59 56 chr1 125690379 125690666 -116973687 - AluJo SINE Alu -24 288 1 355 218 55 163 chr1 125690711 125691000 -116973353 + L1MC5 LINE L1 7604 7861 -100 1868 113 0 8 chr1 125691029 125691295 -116973058 - AluSg SINE Alu -1 309 46 23 68 0 0 chr1 125691683 125691727 -116972626 + AT_rich Low_complexity Low_complexity 1 44 0 226 271 12 24 chr1 125692221 125692306 -116972047 + CT-rich Low_complexity Low_complexity 2 85 0 639 254 59 6 chr1 125693077 125693246 -116971107 - MIR SINE MIR 0 262 85 3323 241 34 86 chr1 125695301 125695474 -116968879 - L1MB8 LINE L1 -6 6172 5991 1543 167 35 50 chr1 125695474 125695816 -116968537 + MER1B DNA MER1_type 1 337 0 3323 241 34 86 chr1 125695816 125696047 -116968306 - L1MB8 LINE L1 -187 5991 5749 1854 119 4 18 chr1 125696047 125696325 -116968028 - AluSq SINE Alu -39 274 1 3323 241 34 86 chr1 125696325 125698501 -116965852 - L1MB8 LINE L1 -429 5749 3740 207 0 0 0 chr1 125699399 125699422 -116964931 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 215 267 12 43 chr1 125699526 125699687 -116964666 + A-rich Low_complexity Low_complexity 3 158 0 371 273 50 56 chr1 125700283 125700554 -116963799 + MER34C LTR ERV1 1 263 -279 230 253 101 0 chr1 125700568 125700647 -116963706 + MIR SINE MIR 105 191 -71 26 74 0 0 chr1 125700680 125700734 -116963619 + AT_rich Low_complexity Low_complexity 1 54 0 29 70 0 0 chr1 125700879 125700936 -116963417 + AT_rich Low_complexity Low_complexity 1 57 0 235 211 164 46 chr1 125701287 125701439 -116962914 + MLT1L LTR MaLR 412 581 -34 29 28 0 0 chr1 125701453 125701489 -116962864 + AT_rich Low_complexity Low_complexity 1 36 0 4418 36 2 0 chr1 125701600 125702132 -116962221 - L1PA4 LINE L1 0 6155 5623 13850 44 1 1 chr1 125702132 125703867 -116960486 + L1P LINE L1 3589 5324 -822 1018 107 0 34 chr1 125704746 125704895 -116959458 - AluSq/x SINE Alu -167 146 3 185 365 35 26 chr1 125704902 125704976 -116959377 + L2 LINE L2 3162 3239 -74 180 0 0 0 chr1 125704976 125704996 -116959357 + (TAA)n Simple_repeat Simple_repeat 1 20 0 185 365 35 26 chr1 125704996 125705036 -116959317 + L2 LINE L2 3239 3277 -36 900 256 123 8 chr1 125705126 125705509 -116958844 - MER20B DNA MER1_type -144 639 213 463 327 23 31 chr1 125705563 125705823 -116958530 - L1ME1 LINE L1 -4 6162 5905 877 214 0 11 chr1 125705841 125706019 -116958334 + AluSp SINE Alu 137 312 -1 277 288 21 125 chr1 125707812 125708067 -116956286 - MIR SINE MIR -10 252 25 503 358 61 52 chr1 125708383 125708878 -116955475 - LTR67 LTR ERVL -19 538 40 1597 167 55 0 chr1 125709280 125709573 -116954780 + AluSx SINE Alu 4 312 0 21 36 0 0 chr1 125711760 125711788 -116952565 + AT_rich Low_complexity Low_complexity 1 28 0 2717 25 3 0 chr1 125713097 125713421 -116950932 + L1PA2 LINE L1 5830 6154 -1 26 30 0 0 chr1 125713759 125713792 -116950561 + AT_rich Low_complexity Low_complexity 1 33 0 228 111 0 0 chr1 125715809 125715845 -116948508 + (CA)n Simple_repeat Simple_repeat 1 36 0 395 206 80 75 chr1 125715930 125716129 -116948224 + L2 LINE L2 2153 2352 -962 263 182 18 0 chr1 125716142 125716197 -116948156 - HERVL LTR ERVL -5598 56 1 324 250 108 14 chr1 125716277 125716425 -116947928 + L1MA10 LINE L1 6166 6327 -7 21 36 0 0 chr1 125717271 125717299 -116947054 + AT_rich Low_complexity Low_complexity 1 28 0 2688 20 0 3 chr1 125717299 125717605 -116946748 + AluYa5 SINE Alu 1 305 -6 224 278 14 0 chr1 125717901 125717973 -116946380 + (TATG)n Simple_repeat Simple_repeat 4 76 0 374 238 25 0 chr1 125717983 125718063 -116946290 + MER7A DNA MER2_type 1 80 -266 21 0 0 0 chr1 125718260 125718281 -116946072 + AT_rich Low_complexity Low_complexity 1 21 0 247 231 130 56 chr1 125718462 125718678 -116945675 + L1MC/D LINE L1 5255 5486 -2322 21 0 0 0 chr1 125718749 125718770 -116945583 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr1 125719196 125719230 -116945123 + AT_rich Low_complexity Low_complexity 1 34 0 609 206 6 18 chr1 125719588 125719753 -116944600 + GA-rich Low_complexity Low_complexity 3 165 0 284 241 0 0 chr1 125719888 125719946 -116944407 - L1MC3 LINE L1 -518 7685 7628 250 271 24 12 chr1 125719966 125720051 -116944302 - MLT1F1 LTR MaLR -442 125 40 6104 237 54 31 chr1 125720053 125722166 -116942187 - L1MC3 LINE L1 -686 7517 5232 509 0 16 0 chr1 125722166 125722227 -116942126 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 6104 237 54 31 chr1 125722227 125722419 -116941934 - L1MC3 LINE L1 -2971 5232 5046 2237 285 65 20 chr1 125722428 125723614 -116940739 - L1MC3 LINE L1 -2446 4118 2880 611 237 15 0 chr1 125723666 125723797 -116940556 + MLT1A1 LTR MaLR 231 363 -2 2811 206 23 2 chr1 125723800 125724357 -116939996 + MLT1A1-int LTR MaLR 2 570 -1165 * 3198 228 7 18 chr1 125724356 125724903 -116939450 + L1P LINE L1 4471 5007 -1139 1630 191 3 10 chr1 125724903 125725207 -116939146 + AluJb SINE Alu 1 302 -10 3198 228 7 18 chr1 125725207 125725484 -116938869 + L1P LINE L1 5007 5286 -860 2023 229 103 25 chr1 125725486 125726385 -116937968 + L1MCa LINE L1 867 1954 -4472 1431 238 50 6 chr1 125726388 125726729 -116937624 - MLT1A1 LTR MaLR -2 363 8 1111 289 105 82 chr1 125726734 125727198 -116937155 - L1MC3 LINE L1 -5437 819 241 1114 30 0 0 chr1 125727198 125727332 -116937021 - L1PA2 LINE L1 -1 6154 6021 1111 289 105 82 chr1 125727332 125727517 -116936836 - L1MC3 LINE L1 -6015 241 62 32 26 0 0 chr1 125727517 125727556 -116936797 + AT_rich Low_complexity Low_complexity 1 39 0 434 356 47 22 chr1 125727808 125728128 -116936225 - L1M4 LINE L1 -3320 2826 2499 4562 165 16 39 chr1 125728397 125728974 -116935379 + L1PB4 LINE L1 5226 5777 -379 273 57 0 0 chr1 125728974 125729009 -116935344 + (CA)n Simple_repeat Simple_repeat 2 36 0 4562 165 16 39 chr1 125729009 125729378 -116934975 + L1PB4 LINE L1 5777 6153 -3 2256 235 10 14 chr1 125729476 125729515 -116934838 - MLT2B2 LTR ERVL -1 553 515 306 0 0 0 chr1 125729515 125729549 -116934804 + (CA)n Simple_repeat Simple_repeat 2 35 0 2256 235 10 14 chr1 125729549 125730004 -116934349 - MLT2B2 LTR ERVL -39 515 6 22 0 0 0 chr1 125730032 125730054 -116934299 + AT_rich Low_complexity Low_complexity 1 22 0 6171 107 11 0 chr1 125730120 125731492 -116932861 - L1PA8 LINE L1 -14 6158 4779 5461 113 10 1 chr1 125731493 125732298 -116932055 + L1PA8 LINE L1 3950 4761 -1385 2817 38 3 0 chr1 125732329 125732671 -116931682 + L1PA4 LINE L1 5810 6152 -3 51 31 0 0 chr1 125732696 125732761 -116931592 + AT_rich Low_complexity Low_complexity 1 65 0 313 289 21 21 chr1 125733076 125733173 -116931180 + L1MC4 LINE L1 6617 6713 -1329 23 33 0 0 chr1 125733459 125733489 -116930864 + AT_rich Low_complexity Low_complexity 1 30 0 363 121 0 0 chr1 125734254 125734312 -116930041 + (T)n Simple_repeat Simple_repeat 1 58 0 34 55 0 0 chr1 125734771 125734826 -116929527 + AT_rich Low_complexity Low_complexity 1 55 0 27 29 0 0 chr1 125735159 125735193 -116929160 + AT_rich Low_complexity Low_complexity 1 34 0 2323 122 57 10 chr1 125736068 125736454 -116927899 + MLT2A1 LTR ERVL 1 404 -40 311 176 0 15 chr1 125736455 125736523 -116927830 + (TA)n Simple_repeat Simple_repeat 2 68 0 357 59 0 20 chr1 125736537 125736588 -116927765 + MLT2A1 LTR ERVL 404 453 0 8725 102 13 0 chr1 125736588 125737801 -116926552 + HERVL-A1-A1 LTR ERVL 1 1229 -4425 320 0 0 0 chr1 125738066 125738104 -116926249 + MLT2A1 LTR ERVL 1 38 -406 32275 98 11 4 chr1 125738148 125742555 -116921798 + HERVL-A1-A1 LTR ERVL 1215 5654 0 2576 97 27 30 chr1 125742555 125742956 -116921397 + MLT2A1 LTR ERVL 1 400 -44 234 113 32 32 chr1 125742964 125743026 -116921327 + (TA)n Simple_repeat Simple_repeat 2 63 0 567 91 46 23 chr1 125743035 125743210 -116921143 + (TTATA)n Simple_repeat Simple_repeat 2 180 0 632 72 70 14 chr1 125743210 125743506 -116920847 + (TA)n Simple_repeat Simple_repeat 1 312 0 402 154 0 0 chr1 125745148 125745226 -116919127 + CT-rich Low_complexity Low_complexity 1 78 0 226 254 84 0 chr1 125745330 125745401 -116918952 + LTR13 LTR ERVK 661 737 -270 27 49 0 0 chr1 125745501 125745542 -116918811 + AT_rich Low_complexity Low_complexity 1 41 0 1131 298 92 51 chr1 125745935 125746602 -116917751 + MER21B LTR ERV1 18 711 -152 327 271 47 0 chr1 125746619 125746704 -116917649 + MER21B LTR ERV1 667 755 -108 439 339 94 77 chr1 125746924 125748343 -116916010 + L2 LINE L2 772 2228 -1086 564 89 0 0 chr1 125748343 125748422 -116915931 + (TG)n Simple_repeat Simple_repeat 2 80 0 439 339 94 77 chr1 125748422 125748770 -116915583 + L2 LINE L2 2228 2569 -745 472 248 0 23 chr1 125749349 125749478 -116914875 + FLAM_A SINE Alu 16 141 -1 563 265 82 12 chr1 125749826 125749996 -116914357 + MER74B LTR ERVL 373 554 -68 337 388 93 15 chr1 125750118 125750515 -116913838 + L2 LINE L2 2550 2977 -337 6531 165 48 16 chr1 125750831 125752088 -116912265 + HSMAR2 DNA Mariner 3 1300 -2 256 203 25 51 chr1 125752357 125752515 -116911838 + (TA)n Simple_repeat Simple_repeat 1 154 0 * 316 267 0 43 chr1 125752467 125752709 -116911644 + (TTATA)n Simple_repeat Simple_repeat 1 231 0 1402 193 27 84 chr1 125754026 125754431 -116909922 + MLT1B LTR MaLR 1 382 -8 30 69 0 0 chr1 125754952 125755010 -116909343 + AT_rich Low_complexity Low_complexity 1 58 0 2858 199 7 6 chr1 125755688 125756236 -116908117 - L1PB4 LINE L1 -23 6133 5585 358 214 0 0 chr1 125756237 125756293 -116908060 + tRNA-Leu-CTG tRNA tRNA 28 83 -3 657 210 11 6 chr1 125756309 125756464 -116907889 + L1ME LINE L1 5455 5613 -508 8164 206 106 29 chr1 125756767 125757827 -116906526 + L1M4c LINE L1 48 1026 -5356 751 150 0 8 chr1 125757827 125757960 -116906393 + L1PA16 LINE L1 6035 6166 0 8164 206 106 29 chr1 125757960 125759266 -116905087 + L1M4c LINE L1 1026 2609 -3773 270 331 21 14 chr1 125759311 125759453 -116904900 + MIR SINE MIR 120 262 0 242 355 28 9 chr1 125759643 125759750 -116904603 + L2 LINE L2 3193 3301 -12 334 244 47 0 chr1 125760336 125760422 -116903931 - MLT1E LTR MaLR -2 591 502 2158 73 15 0 chr1 125760422 125760694 -116903659 - AluY SINE Alu -35 276 1 451 261 141 7 chr1 125760714 125760856 -116903497 - MLT1E LTR MaLR -432 161 1 2024 289 109 65 chr1 125761205 125761644 -116902709 - HAL1 LINE L1 -325 2182 1764 2379 141 3 5 chr1 125761644 125762020 -116902333 + THE1C LTR MaLR 1 375 0 8820 134 38 41 chr1 125762020 125763605 -116900748 + THE1C-int LTR MaLR 1 1580 0 2216 130 36 3 chr1 125763605 125763967 -116900386 + THE1C LTR MaLR 1 374 -1 2024 289 109 65 chr1 125763967 125765486 -116898867 - HAL1 LINE L1 -743 1764 125 2458 151 25 34 chr1 125765486 125765778 -116898575 - L1MA3 LINE L1 -10 6295 6007 183 80 0 0 chr1 125765778 125765803 -116898550 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 2458 151 25 34 chr1 125765803 125765981 -116898372 - L1MA3 LINE L1 -298 6007 5829 2024 289 109 65 chr1 125765981 125766050 -116898303 - HAL1 LINE L1 -2382 125 61 849 297 11 11 chr1 125766243 125766506 -116897847 - MLT1C LTR MaLR -3 464 202 191 30 0 61 chr1 125766513 125766546 -116897807 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 27 49 0 0 chr1 125767878 125767919 -116896434 + AT_rich Low_complexity Low_complexity 1 41 0 1416 223 46 69 chr1 125768186 125768621 -116895732 + MLT1D LTR MaLR 1 425 -80 197 417 79 0 chr1 125769167 125769395 -116894958 + L2 LINE L2 2072 2317 -997 7534 31 0 0 chr1 125769613 125770669 -116893684 - L1PA3 LINE L1 -5 6150 5095 1801 28 0 0 chr1 125770669 125770882 -116893471 + L1PA3 LINE L1 4897 5109 -1037 2022 144 3 7 chr1 125771348 125771654 -116892699 - AluSx SINE Alu -7 305 1 284 301 116 25 chr1 125771943 125772262 -116892091 + L1ME2 LINE L1 5593 5940 -224 387 0 0 0 chr1 125772454 125772497 -116891856 + (TA)n Simple_repeat Simple_repeat 2 44 0 220 146 24 0 chr1 125772610 125772651 -116891702 + (TAA)n Simple_repeat Simple_repeat 1 42 0 214 317 155 7 chr1 125773098 125773240 -116891113 - L2 LINE L2 -9 3304 3142 25 99 0 0 chr1 125773608 125773689 -116890664 + AT_rich Low_complexity Low_complexity 1 81 0 2580 176 36 52 chr1 125773761 125773825 -116890528 - MLT2B2 LTR ERVL 0 515 452 554 75 0 0 chr1 125773825 125773905 -116890448 - L1MA2 LINE L1 0 6304 6225 2580 176 36 52 chr1 125773905 125774363 -116889990 - MLT2B2 LTR ERVL -63 452 1 648 256 67 42 chr1 125774494 125774853 -116889500 - LTR37A LTR ERV1 -1 425 58 21 57 0 0 chr1 125775306 125775341 -116889012 + AT_rich Low_complexity Low_complexity 1 35 0 252 209 0 47 chr1 125775556 125775642 -116888711 + (TA)n Simple_repeat Simple_repeat 1 82 0 237 261 5 20 chr1 125775984 125776193 -116888160 + CT-rich Low_complexity Low_complexity 1 205 0 260 277 11 0 chr1 125776613 125776707 -116887646 + (TA)n Simple_repeat Simple_repeat 1 95 0 511 348 40 12 chr1 125777225 125777516 -116886837 - MLT1J2 LTR MaLR -132 318 15 23 33 0 0 chr1 125777597 125777627 -116886726 + AT_rich Low_complexity Low_complexity 1 30 0 517 202 4 44 chr1 125778990 125779242 -116885111 + pTR5 LTR ERV1 781 1022 -1416 4310 124 42 5 chr1 125779328 125779991 -116884362 + LTR12 LTR ERV1 1 688 0 341 296 71 26 chr1 125780755 125781027 -116883326 + MLT1J1 LTR MaLR 48 333 -117 292 373 15 15 chr1 125781267 125781401 -116882952 + L2 LINE L2 3180 3313 0 319 294 19 69 chr1 125781630 125781790 -116882563 + MER5B DNA MER1_type 4 155 -23 227 389 16 16 chr1 125781698 125781824 -116882529 - MER5A DNA MER1_type -63 126 1 * 25 31 0 0 chr1 125782189 125782221 -116882132 + AT_rich Low_complexity Low_complexity 1 32 0 399 328 103 70 chr1 125782483 125782938 -116881415 - L2 LINE L2 -15 3298 2829 489 345 12 0 chr1 125782992 125783160 -116881193 - L2 LINE L2 -623 2691 2522 1510 177 69 30 chr1 125783173 125783534 -116880819 - THE1C LTR MaLR 0 375 1 7593 201 26 11 chr1 125783534 125785159 -116879194 - THE1C-int LTR MaLR 0 1651 2 1559 199 49 25 chr1 125785162 125785528 -116878825 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr1 125785813 125785839 -116878514 + AT_rich Low_complexity Low_complexity 1 26 0 6387 73 36 0 chr1 125787083 125788331 -116876022 + L1PA8 LINE L1 4889 6169 -3 16016 196 57 26 chr1 125789049 125790722 -116873631 + L1MA1 LINE L1 15 1635 -5930 333 0 0 0 chr1 125790722 125790759 -116873594 + (GA)n Simple_repeat Simple_repeat 2 38 0 16016 196 57 26 chr1 125790759 125792989 -116871364 + L1MA1 LINE L1 1635 4031 -3534 1107 114 36 0 chr1 125792989 125793156 -116871197 - HERVL LTR ERVL -4754 900 728 182 300 122 0 chr1 125793156 125793246 -116871107 - L2 LINE L2 -2865 449 349 4557 101 6 0 chr1 125793246 125793871 -116870482 - HERVL-A2 LTR ERVL -5017 637 9 2701 108 78 26 chr1 125793899 125793933 -116870420 - MLT2A2 LTR ERVL -5 448 417 288 0 0 0 chr1 125793933 125793965 -116870388 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 654 47 0 0 chr1 125793964 125794050 -116870303 + (GA)n Simple_repeat Simple_repeat 2 87 0 2701 108 78 26 chr1 125793965 125794441 -116869912 - MLT2A2 LTR ERVL -36 417 1 8574 164 25 14 chr1 125794441 125794682 -116869671 + L1MA1 LINE L1 4993 5230 -2491 1456 214 58 17 chr1 125794682 125795042 -116869311 + THE1C LTR MaLR 1 375 0 8574 164 25 14 chr1 125795042 125795930 -116868423 + L1MA1 LINE L1 5230 6107 -1614 1038 113 6 0 chr1 125795930 125796083 -116868270 + L1PA11 LINE L1 6015 6174 0 8574 164 25 14 chr1 125796083 125797492 -116866861 + L1MA1 LINE L1 6107 7557 -164 291 372 58 29 chr1 125798602 125798893 -116865460 + L2 LINE L2 2256 2560 -754 7701 49 2 0 chr1 125798893 125800630 -116863723 - L1PA5 LINE L1 0 6154 4419 291 372 58 29 chr1 125800630 125800685 -116863668 + L2 LINE L2 2560 2612 -702 193 350 31 21 chr1 125800751 125800848 -116863505 + L2 LINE L2 2788 2885 -429 334 330 32 32 chr1 125801020 125801205 -116863148 - LTR16C LTR ERVL -13 478 294 276 100 0 0 chr1 125801377 125801417 -116862936 + (A)n Simple_repeat Simple_repeat 1 40 0 533 347 49 44 chr1 125801777 125802325 -116862028 - ERVL LTR ERVL -471 5293 4743 1141 162 5 5 chr1 125802365 125802563 -116861790 + Tigger1 DNA MER2_type 2221 2418 0 598 218 69 23 chr1 125802694 125802868 -116861485 - MER39 LTR ERV1 0 707 526 11419 33 2 0 chr1 125802902 125804282 -116860071 - L1P LINE L1 -3135 3011 1629 13856 33 2 0 chr1 125804282 125806722 -116857631 + L1PA3 LINE L1 3718 6155 0 968 117 0 14 chr1 125806738 125806883 -116857470 + FLAM_C SINE Alu 1 143 0 511 201 113 63 chr1 125806899 125807058 -116857295 - MER39 LTR ERV1 -236 471 305 420 197 90 33 chr1 125807027 125807149 -116857204 - MER39 LTR ERV1 -573 134 6 * 526 252 62 82 chr1 125807204 125807510 -116856843 + L1ME1 LINE L1 5867 6166 0 21 71 0 0 chr1 125807549 125807591 -116856762 + AT_rich Low_complexity Low_complexity 1 42 0 359 297 45 10 chr1 125807998 125808200 -116856153 + L1ME LINE L1 5561 5769 -352 213 240 30 20 chr1 125808667 125808767 -116855586 + (TATAA)n Simple_repeat Simple_repeat 4 104 0 695 211 25 25 chr1 125808884 125809083 -116855270 + L1MA7 LINE L1 5108 5306 -840 * 4703 151 45 2 chr1 125809078 125809979 -116854374 + L1PB4 LINE L1 5209 6148 -8 2178 188 48 23 chr1 125809961 125810476 -116853877 + L1MA7 LINE L1 5260 5787 -504 * 1240 209 46 74 chr1 125810476 125810826 -116853527 + MER2 DNA MER2_type 1 340 -5 2056 160 50 77 chr1 125810830 125811350 -116853003 + L1MA7 LINE L1 5786 6291 0 246 364 74 12 chr1 125812222 125812384 -116851969 - L2 LINE L2 -588 2726 2555 728 297 52 17 chr1 125812438 125812670 -116851683 - MIR SINE MIR -21 241 2 21 57 0 0 chr1 125814287 125814322 -116850031 + AT_rich Low_complexity Low_complexity 1 35 0 1312 225 28 92 chr1 125814623 125814663 -116849690 - MLT2D LTR ERVL 0 414 373 225 0 0 0 chr1 125814663 125814688 -116849665 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr1 125814687 125814707 -116849646 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 1312 225 28 92 chr1 125814688 125815101 -116849252 - MLT2D LTR ERVL -41 373 8 201 310 35 23 chr1 125815662 125815749 -116848604 + MIR3 SINE MIR 113 200 -8 225 203 85 17 chr1 125816500 125816559 -116847794 + L2 LINE L2 359 421 -2893 5021 167 10 20 chr1 125816579 125818033 -116846320 + L1MA4A LINE L1 4876 6303 0 186 133 0 0 chr1 125818035 125818065 -116846288 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 24 53 0 0 chr1 125818126 125818164 -116846189 + AT_rich Low_complexity Low_complexity 1 38 0 203 250 0 0 chr1 125818713 125818765 -116845588 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 300 315 97 53 chr1 125818979 125819319 -116845034 + L1 LINE L1 4398 4752 -1394 29 60 0 0 chr1 125820307 125820357 -116843996 + AT_rich Low_complexity Low_complexity 1 50 0 1003 331 40 8 chr1 125820732 125821103 -116843250 - LTR16B LTR ERVL -47 417 35 298 158 53 40 chr1 125821216 125821292 -116843061 + L1MA7 LINE L1 6210 6286 -5 1724 156 37 61 chr1 125821350 125821729 -116842624 + THE1C LTR MaLR 4 373 -2 8731 133 20 77 chr1 125821731 125823407 -116840946 + THE1C-int LTR MaLR 1 1580 0 1587 191 42 33 chr1 125823418 125823779 -116840574 + THE1C LTR MaLR 12 375 0 1068 300 121 35 chr1 125823834 125824010 -116840343 + MLT2F LTR ERVL 12 172 -491 180 77 0 0 chr1 125824010 125824036 -116840317 + (CA)n Simple_repeat Simple_repeat 1 26 0 1068 300 121 35 chr1 125824036 125824455 -116839898 + MLT2F LTR ERVL 172 658 -5 676 309 93 7 chr1 125825115 125825393 -116838960 + LTR41 LTR ERVL 9 310 -463 280 250 45 11 chr1 125825418 125825506 -116838847 + LTR41 LTR ERVL 234 324 -449 2211 93 0 0 chr1 125825706 125826018 -116838335 - L1PA5 LINE L1 0 6154 5843 513 303 16 74 chr1 125826092 125826402 -116837951 + LTR41 LTR ERVL 481 772 -1 540 307 7 0 chr1 125827002 125827152 -116837201 + MER63A DNA MER1_type 57 207 -3 30 59 0 0 chr1 125827322 125827373 -116836980 + AT_rich Low_complexity Low_complexity 1 51 0 190 393 43 21 chr1 125829357 125829591 -116834762 - L2 LINE L2 -540 2774 2536 22 0 0 0 chr1 125829747 125829769 -116834584 + AT_rich Low_complexity Low_complexity 1 22 0 1128 325 229 20 chr1 125829946 125831326 -116833027 + L2 LINE L2 228 1896 -1418 182 321 36 12 chr1 125831459 125831543 -116832810 + L2 LINE L2 2376 2461 -853 1822 143 13 30 chr1 125831917 125832217 -116832136 - AluSx SINE Alu -3 309 15 1665 180 141 5 chr1 125832371 125832748 -116831605 + MSTA LTR MaLR 1 428 0 8393 208 11 12 chr1 125832748 125834192 -116830161 + MSTA-int LTR MaLR 1 1444 -207 3934 123 5 3 chr1 125834192 125834791 -116829562 + MER4A LTR ERV1 1 600 0 8393 208 11 12 chr1 125834791 125834999 -116829354 + MSTA-int LTR MaLR 1444 1651 0 1780 182 91 8 chr1 125834999 125835394 -116828959 + MSTA LTR MaLR 1 428 0 379 301 131 0 chr1 125835568 125835721 -116828632 + MLT1F LTR MaLR 366 538 -4 248 0 31 0 chr1 125835879 125835911 -116828442 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 706 311 31 0 chr1 125835992 125836217 -116828136 - L2 LINE L2 -964 2350 2119 368 180 0 11 chr1 125836358 125836447 -116827906 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1342 263 12 69 chr1 125836447 125836957 -116827396 - MLT2B1 LTR ERVL -39 481 1 1368 264 73 107 chr1 125837086 125837960 -116826393 - L1MC4 LINE L1 -1 8041 7230 2094 142 0 9 chr1 125837960 125838276 -116826077 + AluSq SINE Alu 1 313 0 1368 264 73 107 chr1 125838276 125838819 -116825534 - L1MC4 LINE L1 -812 7230 6671 471 119 18 119 chr1 125838858 125838967 -116825386 + MER4A LTR ERV1 1 98 -566 1625 146 164 75 chr1 125838967 125839338 -116825015 + MER4A LTR ERV1 261 664 0 305 280 121 22 chr1 125839339 125839521 -116824832 - L1MC3 LINE L1 -1150 6635 6436 504 199 6 33 chr1 125839717 125839898 -116824455 + CT-rich Low_complexity Low_complexity 1 176 0 318 241 108 49 chr1 125839921 125840341 -116824012 - L1MC4a LINE L1 -1523 6285 5802 24 77 0 0 chr1 125841127 125841179 -116823174 + AT_rich Low_complexity Low_complexity 1 52 0 218 212 0 47 chr1 125841179 125841264 -116823089 + T-rich Low_complexity Low_complexity 2 82 0 260 136 25 25 chr1 125841869 125841950 -116822403 + (TTATA)n Simple_repeat Simple_repeat 4 84 0 2122 169 62 12 chr1 125843847 125844250 -116820103 - MSTB LTR MaLR 0 426 4 390 421 13 0 chr1 125845059 125845211 -116819142 + MER91A DNA MER1_type 18 171 -25 223 326 11 32 chr1 125845769 125845864 -116818489 - MIR SINE MIR -124 138 46 2366 80 0 7 chr1 125846255 125846554 -116817799 + AluY SINE Alu 1 297 -14 405 0 0 0 chr1 125846820 125846865 -116817488 + (TG)n Simple_repeat Simple_repeat 2 46 0 1306 159 59 103 chr1 125847033 125847423 -116816930 + THE1C LTR MaLR 3 375 0 217 250 0 16 chr1 125848264 125848328 -116816025 + A-rich Low_complexity Low_complexity 3 65 0 366 210 35 42 chr1 125898606 125898749 -116765604 + AluY SINE Alu 140 281 -20 362 161 5 104 chr1 125899972 125900165 -116764188 + A-rich Low_complexity Low_complexity 4 177 0 294 171 59 47 chr1 125900097 125900267 -116764086 + (CACAA)n Simple_repeat Simple_repeat 4 175 0 * 1422 221 26 73 chr1 125900407 125900747 -116763606 + L1MA9 LINE L1 5428 5742 -570 1998 114 19 13 chr1 125900747 125900880 -116763473 + AluSg SINE Alu 1 132 -178 2227 92 0 13 chr1 125900880 125901185 -116763168 + AluY SINE Alu 1 301 -10 1998 114 19 13 chr1 125901185 125901359 -116762994 + AluSg SINE Alu 132 310 0 1422 221 26 73 chr1 125901359 125901483 -116762870 + L1MA9 LINE L1 5742 5870 -442 21 0 0 0 chr1 125901667 125901688 -116762665 + AT_rich Low_complexity Low_complexity 1 21 0 296 260 1 0 chr1 125901688 125901762 -116762591 - L1MC4a LINE L1 -435 5743 5669 2154 149 45 108 chr1 125901791 125901846 -116762507 + L1PA16 LINE L1 5683 5740 -426 1918 128 0 43 chr1 125901846 125902151 -116762202 + AluSx SINE Alu 1 292 -20 2154 149 45 108 chr1 125902151 125902606 -116761747 + L1PA16 LINE L1 5740 6161 -5 2996 221 66 56 chr1 125902647 125903079 -116761274 - L1MD1 LINE L1 -5 6237 5811 2311 68 3 3 chr1 125903079 125903374 -116760979 - AluY SINE Alu -16 295 1 2996 221 66 56 chr1 125903374 125904090 -116760263 - L1MD1 LINE L1 -431 5811 5076 26 0 0 0 chr1 125904140 125904166 -116760187 + AT_rich Low_complexity Low_complexity 1 26 0 30646 32 0 2 chr1 125904275 125908773 -116755580 - L1PA3 LINE L1 -3 6152 1662 405 191 0 11 chr1 125908782 125908871 -116755482 - L1MD1 LINE L1 -1101 5045 4958 1351 228 8 0 chr1 125909265 125909533 -116754820 + MSTC LTR MaLR 132 401 -27 322 289 24 0 chr1 125909678 125909761 -116754592 - L1MCa LINE L1 -5990 436 352 228 349 20 14 chr1 125909896 125910042 -116754311 - L1MCa LINE L1 -6244 182 36 2146 107 10 3 chr1 125911428 125911726 -116752627 + AluSq SINE Alu 1 300 -13 23 0 0 0 chr1 125911895 125911918 -116752435 + AT_rich Low_complexity Low_complexity 1 23 0 2077 195 52 20 chr1 125912441 125912939 -116751414 - L1MA9 LINE L1 0 6312 5799 227 180 37 50 chr1 125913216 125913377 -116750976 + (GTGTG)n Simple_repeat Simple_repeat 3 161 0 722 258 26 94 chr1 125913927 125914594 -116749759 + L1MCc LINE L1 1210 1843 -4903 888 250 76 17 chr1 125914608 125914844 -116749509 + MER76 LTR ERV 1 250 -438 183 80 0 0 chr1 125914880 125914905 -116749448 + (TA)n Simple_repeat Simple_repeat 1 25 0 2070 102 7 3 chr1 125914905 125915190 -116749163 - AluY SINE Alu -25 286 1 460 310 40 50 chr1 125915206 125915606 -116748747 - L1ME3A LINE L1 -248 5916 5521 214 301 72 65 chr1 125915781 125915934 -116748419 - L2 LINE L2 -32 3281 3128 652 331 55 18 chr1 125916123 125916395 -116747958 - LTR16A LTR ERVL -5 445 164 2948 153 54 23 chr1 125916462 125917036 -116747317 + LTR38B LTR ERV1 1 592 -18 380 270 78 122 chr1 125917119 125917489 -116746864 + LTR38B-int LTR ERV1 124 477 -1309 858 211 64 25 chr1 125917710 125917914 -116746439 + LTR38B-int LTR ERV1 1349 1560 -2725 4049 124 21 127 chr1 125918081 125919620 -116744733 + pTR5 LTR ERV1 743 2606 0 21 36 0 0 chr1 125919639 125919667 -116744686 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 125920036 125920062 -116744291 + AT_rich Low_complexity Low_complexity 1 26 0 234 191 0 0 chr1 125920091 125920138 -116744215 + (TA)n Simple_repeat Simple_repeat 2 48 0 340 316 31 22 chr1 125920243 125920468 -116743885 + L1MCc LINE L1 2167 2393 -4550 355 209 11 88 chr1 125920489 125920580 -116743773 - MER5A DNA MER1_type -7 182 99 219 204 0 0 chr1 125920583 125920632 -116743721 + (TG)n Simple_repeat Simple_repeat 2 50 0 28 29 0 0 chr1 125921202 125921237 -116743116 + AT_rich Low_complexity Low_complexity 1 35 0 256 308 58 0 chr1 125921404 125921508 -116742845 - MIR SINE MIR -56 206 97 1762 138 3 7 chr1 125922965 125923302 -116741051 + AluSx SINE Alu 1 336 0 209 385 46 0 chr1 125923435 125923544 -116740809 - L2 LINE L2 0 3313 3200 1170 61 0 0 chr1 125924514 125924661 -116739692 - AluSg/x SINE Alu -1 309 163 240 287 85 11 chr1 125924682 125924776 -116739577 - MIR SINE MIR -73 189 89 402 269 150 6 chr1 125924851 125925011 -116739342 + MIR SINE MIR 63 245 -17 435 303 63 25 chr1 125925267 125925476 -116738877 + MLT1J2 LTR MaLR 59 281 -165 29 87 0 10 chr1 125925725 125925785 -116738568 + AT_rich Low_complexity Low_complexity 1 61 -41 1994 17 0 0 chr1 125925785 125926020 -116738333 + L1PA3 LINE L1 5921 6155 0 29 87 0 10 chr1 125926020 125926062 -116738291 + AT_rich Low_complexity Low_complexity 61 102 0 22 0 0 0 chr1 125926324 125926346 -116738007 + AT_rich Low_complexity Low_complexity 1 22 0 1805 336 95 46 chr1 125926516 125928907 -116735446 + L1M3a LINE L1 11 2053 -3981 685 267 17 33 chr1 125928950 125929286 -116735067 + L1M3a LINE L1 2021 2350 -3684 273 148 0 19 chr1 125929304 125929358 -116734995 + L1MA9 LINE L1 6260 6312 0 1159 158 70 4 chr1 125929623 125929882 -116734471 + L1MA9 LINE L1 6035 6310 -2 240 376 98 11 chr1 125930755 125931093 -116733260 - L2 LINE L2 -207 3106 2688 27 29 0 0 chr1 125931303 125931337 -116733016 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr1 125931415 125931439 -116732914 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr1 125931498 125931538 -116732815 + AT_rich Low_complexity Low_complexity 1 40 0 22 88 0 0 chr1 125931583 125931640 -116732713 + AT_rich Low_complexity Low_complexity 1 57 0 1887 190 0 8 chr1 125931726 125932094 -116732259 - MER47A DNA MER2_type 0 366 2 1133 217 52 132 chr1 125932119 125932777 -116731576 + L1MDa LINE L1 1497 2101 -4439 334 331 116 51 chr1 125932834 125933187 -116731166 + L1M2 LINE L1 897 1272 -5577 964 236 33 32 chr1 125933404 125933788 -116730565 + L1MDa LINE L1 2307 2647 -3893 317 316 25 0 chr1 125933798 125933877 -116730476 - MER5A DNA MER1_type -48 141 61 5028 142 9 3 chr1 125933882 125934961 -116729392 - L1PA15 LINE L1 -6 6159 5083 403 59 0 0 chr1 125935559 125935610 -116728743 + Alu SINE Alu 26 76 -234 1907 90 4 0 chr1 125935710 125935966 -116728387 + AluY SINE Alu 37 293 -18 35 98 0 0 chr1 125936841 125936953 -116727400 + AT_rich Low_complexity Low_complexity 1 112 0 49 43 0 0 chr1 125938227 125938297 -116726056 + AT_rich Low_complexity Low_complexity 1 70 0 218 398 28 9 chr1 125938317 125938425 -116725928 - L2 LINE L2 -1 3271 3162 1757 105 0 0 chr1 125938926 125939154 -116725199 - AluSg/x SINE Alu -19 293 66 372 328 64 24 chr1 125939605 125939980 -116724373 + L1ME LINE L1 5374 5763 -399 21 100 0 0 chr1 125940076 125940146 -116724207 + AT_rich Low_complexity Low_complexity 1 70 0 463 370 120 34 chr1 125941034 125942078 -116722275 + L2 LINE L2 1769 2902 -412 220 330 75 38 chr1 125942350 125942456 -116721897 + L2 LINE L2 3163 3272 0 1820 146 20 0 chr1 125943090 125943384 -116720969 + AluSx SINE Alu 1 300 -12 344 296 24 65 chr1 125944344 125944513 -116719840 + MER92C LTR ERV1 1 162 -392 369 200 0 0 chr1 125944595 125944660 -116719693 + MER92C LTR ERV1 484 548 -6 2148 128 0 0 chr1 125944762 125945058 -116719295 - AluSg SINE Alu -14 296 1 235 295 0 0 chr1 125945070 125945148 -116719205 + (TA)n Simple_repeat Simple_repeat 1 78 0 2620 102 6 0 chr1 125945149 125945511 -116718842 - THE1B LTR MaLR 0 364 1 29 28 0 0 chr1 125945859 125945895 -116718458 + AT_rich Low_complexity Low_complexity 1 36 0 35 0 0 0 chr1 125946529 125946564 -116717789 + AT_rich Low_complexity Low_complexity 1 35 0 1946 113 38 0 chr1 125946828 125947120 -116717233 - AluSq SINE Alu -10 303 1 846 357 74 24 chr1 125949095 125949647 -116714706 + MLT1E LTR MaLR 14 593 0 2705 206 68 98 chr1 125950077 125950759 -116713594 - Tigger6a DNA MER2_type -514 1083 439 3856 100 5 69 chr1 125950759 125951400 -116712953 + MER4A LTR ERV1 1 600 0 2705 206 68 98 chr1 125951400 125951705 -116712648 - Tigger6a DNA MER2_type -1158 439 126 2321 136 8 13 chr1 125951991 125952366 -116711987 - THE1C LTR MaLR -2 373 1 8766 153 44 20 chr1 125952372 125953886 -116710467 - THE1C-int LTR MaLR -6 1574 25 1012 115 0 20 chr1 125953886 125954034 -116710319 - THE1C LTR MaLR -230 145 1 * 1131 241 37 56 chr1 125954034 125954271 -116710082 + MER77 LTR ERV1 292 523 -82 2824 10 0 0 chr1 125954271 125954582 -116709771 + AluYa5 SINE Alu 1 311 0 1131 241 37 56 chr1 125954582 125954660 -116709693 + MER77 LTR ERV1 523 601 -4 249 139 28 14 chr1 125954728 125954800 -116709553 + (TA)n Simple_repeat Simple_repeat 1 73 0 517 184 30 0 chr1 125954811 125954979 -116709374 + (TA)n Simple_repeat Simple_repeat 1 173 0 308 193 30 12 chr1 125955019 125955185 -116709168 + (TA)n Simple_repeat Simple_repeat 2 170 0 1111 205 31 66 chr1 125955186 125955503 -116708850 - L1PA15 LINE L1 -2 6163 5858 2343 97 0 0 chr1 125955504 125955812 -116708541 - AluSp SINE Alu -5 308 1 260 350 19 0 chr1 125956080 125956183 -116708170 - L2 LINE L2 -410 2904 2800 186 239 65 43 chr1 125956587 125956679 -116707674 - L2 LINE L2 -1302 2012 1919 1401 344 128 14 chr1 125956718 125957668 -116706685 - L2 LINE L2 0 3313 2245 1226 115 0 0 chr1 125957805 125957970 -116706383 - AluSp SINE Alu -94 219 55 21 0 0 0 chr1 125959132 125959153 -116705200 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr1 125959507 125959556 -116704797 + AT_rich Low_complexity Low_complexity 1 49 0 1542 221 33 18 chr1 125959560 125959891 -116704462 + MER7A DNA MER2_type 1 334 -12 22 0 0 0 chr1 125961847 125961869 -116702484 + AT_rich Low_complexity Low_complexity 1 22 0 2386 86 0 0 chr1 125961919 125962221 -116702132 + AluY SINE Alu 1 302 -9 180 77 0 0 chr1 125963964 125963990 -116700363 + (CA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr1 125964074 125964098 -116700255 + AT_rich Low_complexity Low_complexity 1 24 0 41 58 0 0 chr1 125964130 125964199 -116700154 + AT_rich Low_complexity Low_complexity 1 69 0 1545 268 80 15 chr1 125964324 125964801 -116699552 - MLT2B1 LTR ERVL -12 508 1 301 289 48 21 chr1 125965329 125965516 -116698837 + HAL1 LINE L1 1430 1621 -886 713 319 66 7 chr1 125965607 125965908 -116698445 + L1MEc LINE L1 42 360 -6036 * 1036 278 76 27 chr1 125965907 125966537 -116697816 + L1M4 LINE L1 3767 4427 -1719 1267 240 28 64 chr1 125966587 125967087 -116697266 + L1M4 LINE L1 3951 4432 -1714 3396 223 84 11 chr1 125967088 125968413 -116695940 + L1P2 LINE L1 4253 5681 -473 2512 121 8 8 chr1 125968553 125968941 -116695412 - HERVL LTR ERVL -4866 788 401 6119 144 19 10 chr1 125969263 125970264 -116694089 + HSMAR2 DNA Mariner 290 1299 -3 247 176 0 39 chr1 125970283 125970334 -116694019 + MLT2C2 LTR ERVL 416 464 0 2061 143 0 0 chr1 125970503 125970811 -116693542 + AluSx SINE Alu 1 308 -4 1472 255 60 21 chr1 125970823 125971258 -116693095 + MLT1D LTR MaLR 54 505 0 59 53 0 0 chr1 125972112 125972206 -116692147 + AT_rich Low_complexity Low_complexity 1 94 0 21 0 0 0 chr1 125973819 125973840 -116690513 + AT_rich Low_complexity Low_complexity 1 21 0 1799 253 89 6 chr1 125973840 125974472 -116689881 - L1MA8 LINE L1 -2065 4081 3398 3236 204 35 8 chr1 125974472 125975208 -116689145 + L1MA8 LINE L1 4104 4859 -1287 205 186 29 0 chr1 125975286 125975356 -116688997 + (TA)n Simple_repeat Simple_repeat 2 73 0 180 0 0 0 chr1 125975424 125975444 -116688909 + (TA)n Simple_repeat Simple_repeat 2 21 0 685 203 95 0 chr1 125975447 125975595 -116688758 - AluJo SINE Alu -33 279 118 1470 148 105 15 chr1 125975648 125975973 -116688380 - L1MA8 LINE L1 -59 6232 5879 2061 216 29 6 chr1 125975975 125976757 -116687596 + L1MA8 LINE L1 4848 5647 -644 1844 177 76 9 chr1 125976759 125977178 -116687175 + L1MA8 LINE L1 5824 6270 -21 25 0 0 0 chr1 125977181 125977206 -116687147 + AT_rich Low_complexity Low_complexity 1 25 0 457 269 162 57 chr1 125977499 125977796 -116686557 + MLT1H LTR MaLR 222 549 0 313 316 120 0 chr1 125978325 125978458 -116685895 + MIR SINE MIR 114 262 0 212 307 50 50 chr1 125978485 125978625 -116685728 - L2 LINE L2 -1065 2249 2110 207 0 0 0 chr1 125978781 125978804 -116685549 + (CA)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr1 125979594 125979617 -116684736 + (CA)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr1 125980111 125980142 -116684211 + AT_rich Low_complexity Low_complexity 1 31 0 198 209 0 0 chr1 125980496 125980539 -116683814 + (TA)n Simple_repeat Simple_repeat 2 44 0 288 0 0 0 chr1 125981188 125981220 -116683133 + (CA)n Simple_repeat Simple_repeat 1 32 0 39 50 0 0 chr1 125981243 125981303 -116683050 + AT_rich Low_complexity Low_complexity 1 60 0 227 329 79 14 chr1 125983330 125983470 -116680883 + L3 LINE CR1 1233 1381 -196 25 65 0 0 chr1 125984404 125984450 -116679903 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr1 125984511 125984541 -116679812 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr1 125985375 125985404 -116678949 + (TA)n Simple_repeat Simple_repeat 1 29 0 11220 98 5 12 chr1 125985760 125987307 -116677046 + HERVL-A2 LTR ERVL 4119 5654 0 2805 112 12 35 chr1 125987307 125987735 -116676618 + MLT2A2 LTR ERVL 1 418 -35 207 0 0 0 chr1 125987755 125987778 -116676575 + (TATAA)n Simple_repeat Simple_repeat 5 27 0 335 127 0 0 chr1 125987778 125987833 -116676520 + MLT2A2 LTR ERVL 390 444 0 1361 308 90 74 chr1 125987835 125989103 -116675250 + MLT-int LTR MaLR 341 1628 -107 324 257 10 0 chr1 125989528 125989629 -116674724 + MLT2C2 LTR ERVL 3 104 -360 4731 242 15 31 chr1 125989788 125990959 -116673394 + ERVL LTR ERVL 2078 3230 -2534 603 245 105 14 chr1 125990979 125991261 -116673092 + L1ME LINE L1 5357 5661 -562 2406 59 0 16 chr1 125991306 125991610 -116672743 + AluY SINE Alu 1 299 -12 282 294 171 18 chr1 125992773 125992943 -116671410 - MIR SINE MIR -1 261 66 21 0 0 0 chr1 125993846 125993867 -116670486 + AT_rich Low_complexity Low_complexity 1 21 0 212 246 0 62 chr1 125994600 125994665 -116669688 + MIR SINE MIR 158 218 -44 1369 236 43 23 chr1 125995697 125996134 -116668219 - LTR37B LTR ERV1 0 468 23 24 0 0 0 chr1 125997750 125997774 -116666579 + AT_rich Low_complexity Low_complexity 1 24 0 253 253 32 42 chr1 125999298 125999309 -116665044 - L1MA10 LINE L1 -6 6328 6318 427 277 0 8 chr1 125999309 125999428 -116664925 - L1ME2 LINE L1 -9 6155 6038 264 313 117 42 chr1 125999542 125999782 -116664571 + MIR SINE MIR 4 261 -1 24 77 0 0 chr1 126002530 126002582 -116661771 + AT_rich Low_complexity Low_complexity 1 52 0 481 169 53 57 chr1 126003346 126003520 -116660833 - L1MA9 LINE L1 -36 6276 6119 6113 204 46 33 chr1 126003538 126005348 -116659005 - L1PA8A LINE L1 -378 5753 3869 36 0 0 0 chr1 126005367 126005403 -116658950 + AT_rich Low_complexity Low_complexity 1 36 0 2336 66 3 3 chr1 126005403 126005704 -116658649 - AluY SINE Alu -10 301 1 785 240 57 6 chr1 126005708 126006041 -116658312 - L1 LINE L1 -2647 3499 3150 28 71 0 0 chr1 126007179 126007235 -116657118 + AT_rich Low_complexity Low_complexity 1 56 0 1582 228 42 25 chr1 126007304 126007738 -116656615 + L1ME1 LINE L1 5420 5860 -306 873 223 3 93 chr1 126007777 126008068 -116656285 + AluJb SINE Alu 1 265 -47 489 265 37 47 chr1 126008070 126008358 -116655995 + L1MA10 LINE L1 5898 6331 -3 447 276 131 5 chr1 126008867 126009081 -116655272 - L1ME3A LINE L1 -305 5865 5625 2305 81 3 3 chr1 126009475 126009773 -116654580 - AluY SINE Alu -11 300 3 383 287 60 67 chr1 126010033 126010315 -116654038 - L1ME3A LINE L1 -761 5385 5106 1161 230 80 46 chr1 126010499 126010944 -116653409 - MER31A LTR ERV1 0 543 2 487 298 138 21 chr1 126010956 126011804 -116652549 - L1ME3A LINE L1 -1161 4985 4039 1168 302 146 37 chr1 126011837 126012377 -116651976 + MLT2E LTR ERVL 30 628 0 23 78 0 0 chr1 126012879 126012930 -116651423 + AT_rich Low_complexity Low_complexity 1 51 0 1461 301 38 43 chr1 126012932 126013718 -116650635 + L1MC4a LINE L1 5481 6262 -1546 443 133 44 35 chr1 126013786 126013899 -116650454 + L1MA9 LINE L1 6199 6312 0 251 28 28 0 chr1 126014505 126014541 -116649812 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 491 246 85 23 chr1 126014577 126014707 -116649646 - AluJb SINE Alu -90 222 85 28 0 0 0 chr1 126014761 126014789 -116649564 + AT_rich Low_complexity Low_complexity 1 28 0 216 351 53 0 chr1 126015901 126015995 -116648358 + L2 LINE L2 3208 3306 -7 43 68 0 10 chr1 126016036 126016059 -116648294 + AT_rich Low_complexity Low_complexity 1 23 -79 1537 107 0 0 chr1 126016059 126016265 -116648088 + AluY SINE Alu 82 287 -24 43 68 0 10 chr1 126016265 126016344 -116648009 + AT_rich Low_complexity Low_complexity 23 102 0 1735 172 13 19 chr1 126016611 126016925 -116647428 - AluSx SINE Alu 0 312 1 22 35 0 0 chr1 126017028 126017057 -116647296 + AT_rich Low_complexity Low_complexity 1 29 0 898 209 92 22 chr1 126018357 126018629 -116645724 - LTR48B LTR ERV1 -74 563 235 1494 168 7 54 chr1 126018639 126018937 -116645416 - AluJb SINE Alu -16 296 13 3204 183 20 7 chr1 126018937 126019544 -116644809 + MER41B LTR ERV1 21 635 0 404 249 230 28 chr1 126019601 126019818 -116644535 - LTR48 LTR ERV1 -526 261 1 1665 203 130 37 chr1 126019853 126020345 -116644008 + MER101B LTR ERV1 1 538 -32 17038 195 52 67 chr1 126020448 126025310 -116639043 - LTR48-int LTR ERV1 -164 6167 1377 383 154 11 11 chr1 126025519 126025610 -116638743 - LTR48-int LTR ERV1 -4951 1380 1290 261 333 0 0 chr1 126025665 126025731 -116638622 - tRNA-Glu-GAG tRNA tRNA 0 75 10 270 202 110 46 chr1 126025747 126025856 -116638497 - LTR49-int LTR ERV1 -5132 1199 1084 532 175 39 10 chr1 126026051 126026154 -116638199 - LTR49-int LTR ERV1 -5492 839 734 25 65 0 0 chr1 126026602 126026648 -116637705 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr1 126026709 126026739 -116637614 + AT_rich Low_complexity Low_complexity 1 30 0 423 0 0 0 chr1 126027573 126027620 -116636733 + (TA)n Simple_repeat Simple_repeat 2 48 0 2391 77 0 0 chr1 126027819 126028129 -116636224 + AluY SINE Alu 1 310 -1 26 50 0 0 chr1 126029325 126029365 -116634988 + AT_rich Low_complexity Low_complexity 1 40 0 3078 40 11 0 chr1 126031913 126032287 -116632066 + L1PA4 LINE L1 5777 6154 -1 1584 81 0 0 chr1 126032288 126032499 -116631854 + L1PA7 LINE L1 5938 6148 -6 3932 183 54 47 chr1 126033242 126034191 -116630162 - L1MA9 LINE L1 0 6312 5358 1550 225 10 0 chr1 126036452 126036759 -116627594 + AluJb SINE Alu 3 312 0 2291 193 17 15 chr1 126036821 126037287 -116627066 + MLT1C LTR MaLR 1 467 0 1688 170 44 13 chr1 126038249 126038567 -116625786 + THE1C LTR MaLR 2 329 -46 10118 130 27 3 chr1 126038598 126040140 -116624213 + THE1C-int LTR MaLR 2 1580 0 2471 86 39 14 chr1 126040144 126040506 -116623847 + THE1C LTR MaLR 5 375 0 3005 182 81 12 chr1 126040708 126041372 -116622981 + MER67C LTR ERV1 1 710 0 2030 127 20 0 chr1 126041729 126042021 -116622332 - AluSg SINE Alu -12 298 1 25 83 0 0 chr1 126042849 126042909 -116621444 + AT_rich Low_complexity Low_complexity 1 60 0 32 43 0 0 chr1 126043195 126043241 -116621112 + AT_rich Low_complexity Low_complexity 1 46 0 870 254 62 32 chr1 126043406 126043776 -116620577 - LTR52 LTR ERVL -40 381 1 192 344 208 0 chr1 126043780 126043876 -116620477 + MIR SINE MIR 60 175 -87 306 231 28 9 chr1 126044146 126044254 -116620099 + (TA)n Simple_repeat Simple_repeat 2 111 0 202 405 27 0 chr1 126044289 126044400 -116619953 - L2 LINE L2 -234 3038 2925 282 335 52 90 chr1 126044920 126045024 -116619329 - L2 LINE L2 -28 3285 3179 2358 68 0 3 chr1 126045024 126045316 -116619037 + AluY SINE Alu 1 291 -20 282 335 52 90 chr1 126045316 126045554 -116618799 - L2 LINE L2 -134 3179 2956 5965 225 70 13 chr1 126045566 126046228 -116618125 + L1MB3 LINE L1 155 778 -5606 215 59 0 29 chr1 126046228 126046262 -116618091 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5965 225 70 13 chr1 126046262 126047190 -116617163 + L1MB3 LINE L1 778 1836 -4548 4755 173 39 32 chr1 126047201 126047778 -116616575 + L1PB2 LINE L1 4544 5115 -1036 279 54 0 0 chr1 126047778 126047815 -116616538 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 4755 173 39 32 chr1 126047815 126048534 -116615819 + L1PB2 LINE L1 5115 5860 -291 1872 192 87 12 chr1 126048534 126048961 -116615392 + LOR1b LTR ERV1 1 459 -2 4755 173 39 32 chr1 126048961 126049253 -116615100 + L1PB2 LINE L1 5860 6148 -3 25 31 0 0 chr1 126049253 126049285 -116615068 + AT_rich Low_complexity Low_complexity 1 32 0 4277 272 58 14 chr1 126049286 126049844 -116614509 + L1MB3 LINE L1 3918 4450 -1932 354 45 0 0 chr1 126049844 126049888 -116614465 + (CA)n Simple_repeat Simple_repeat 1 44 0 4277 272 58 14 chr1 126049888 126050943 -116613410 + L1MB3 LINE L1 4450 5603 -779 567 187 0 9 chr1 126050943 126051050 -116613303 + AluSq/x SINE Alu 1 106 -207 2305 193 90 0 chr1 126051084 126051593 -116612760 + L1MB3 LINE L1 5838 6392 -27 225 0 0 0 chr1 126051594 126051619 -116612734 + (TA)n Simple_repeat Simple_repeat 2 26 0 1554 230 23 11 chr1 126051954 126052302 -116612051 + MLT1A1 LTR MaLR 10 361 -4 1033 255 18 27 chr1 126052306 126052639 -116611714 + MLT1A1-int LTR MaLR 1 330 -1405 1772 132 8 0 chr1 126052663 126052929 -116611424 + MLT2A2 LTR ERVL 1 268 -185 225 198 12 37 chr1 126053353 126053434 -116610919 + A-rich Low_complexity Low_complexity 3 81 0 3370 214 46 80 chr1 126053563 126054498 -116609855 - LTR48B-int LTR ERV1 -5428 903 1 649 213 21 7 chr1 126054500 126054641 -116609712 - LTR48B LTR ERV1 0 644 502 27 29 0 0 chr1 126054782 126054816 -116609537 + AT_rich Low_complexity Low_complexity 1 34 0 713 266 99 21 chr1 126055095 126055377 -116608976 - L1ME3A LINE L1 -10 6160 5857 489 272 126 38 chr1 126055445 126055706 -116608647 + Charlie7 DNA MER1_type 167 450 -2162 300 282 45 18 chr1 126055710 126055820 -116608533 - L1MEd LINE L1 -3762 2367 2255 316 256 103 102 chr1 126055829 126056142 -116608211 - L1MEd LINE L1 -4560 1657 1346 2100 112 10 13 chr1 126056142 126056445 -116607908 - AluSc SINE Alu -7 302 1 316 256 103 102 chr1 126056445 126056531 -116607822 - L1MEd LINE L1 -4871 1346 1262 3701 154 24 3 chr1 126056531 126057162 -116607191 - LTR9B LTR ERV1 0 644 1 316 256 103 102 chr1 126057162 126057463 -116606890 - L1MEd LINE L1 -4955 1262 938 301 222 12 49 chr1 126058445 126058526 -116605827 - MER5A DNA MER1_type -77 112 35 269 346 0 0 chr1 126059511 126059589 -116604764 - MLT1I LTR MaLR -234 175 98 371 296 85 40 chr1 126059773 126059931 -116604422 + L1MEd LINE L1 286 456 -5663 242 29 29 0 chr1 126059931 126059966 -116604387 + (TAA)n Simple_repeat Simple_repeat 1 36 0 371 296 85 40 chr1 126059966 126060006 -116604347 + L1MEd LINE L1 456 493 -5626 360 0 0 0 chr1 126060018 126060058 -116604295 + (TC)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 126060057 126060078 -116604275 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 301 259 141 32 chr1 126060224 126060409 -116603944 + L1MEd LINE L1 697 901 -5218 22 0 0 0 chr1 126060412 126060434 -116603919 + AT_rich Low_complexity Low_complexity 1 22 0 229 247 26 0 chr1 126060506 126060583 -116603770 + (TA)n Simple_repeat Simple_repeat 2 80 0 736 294 17 4 chr1 126060588 126060849 -116603504 - L1ME LINE L1 -496 5668 5401 333 300 14 0 chr1 126060868 126061008 -116603345 + L1ME1 LINE L1 5803 5944 -222 1398 109 0 5 chr1 126061040 126061232 -116603121 + AluSp SINE Alu 119 309 -4 324 0 0 0 chr1 126061330 126061366 -116602987 + (TG)n Simple_repeat Simple_repeat 1 36 0 1807 145 3 11 chr1 126061366 126061648 -116602705 - AluSq SINE Alu -33 280 1 22 35 0 0 chr1 126061765 126061794 -116602559 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr1 126061980 126062015 -116602338 + AT_rich Low_complexity Low_complexity 1 35 0 2076 108 24 0 chr1 126062346 126062664 -116601689 + AluSx SINE Alu 1 325 0 1207 189 20 86 chr1 126062721 126063023 -116601330 + MLT1B LTR MaLR 101 382 -8 1377 157 63 52 chr1 126063812 126064101 -116600252 + AluSx SINE Alu 11 302 0 1510 51 10 5 chr1 126064231 126064426 -116599927 + LTR5 LTR ERVK 1 196 -773 8369 132 8 2 chr1 126064580 126065862 -116598491 - HERVL LTR ERVL -3596 2058 769 794 237 28 42 chr1 126066097 126066380 -116597973 + LTR4 LTR ERV1 318 596 0 868 83 8 23 chr1 126066380 126066513 -116597840 + AluSc SINE Alu 174 304 -5 2188 70 33 7 chr1 126066691 126066993 -116597360 + AluY SINE Alu 1 310 -1 1444 146 19 184 chr1 126067658 126068125 -116596228 - MLT1B LTR MaLR 0 390 1 26 0 0 0 chr1 126068361 126068387 -116595966 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr1 126068860 126068884 -116595469 + AT_rich Low_complexity Low_complexity 1 24 0 2133 229 55 80 chr1 126068884 126069018 -116595335 - L1MCb LINE L1 -4600 1964 1828 306 67 0 0 chr1 126069018 126069063 -116595290 + (TG)n Simple_repeat Simple_repeat 2 46 0 2133 229 55 80 chr1 126069063 126069493 -116594860 - L1MCb LINE L1 -4736 1828 1389 2009 123 4 0 chr1 126069493 126069798 -116594555 - AluSx SINE Alu 0 310 5 2133 229 55 80 chr1 126069798 126070170 -116594183 - L1MCb LINE L1 -5175 1389 1009 1986 121 3 3 chr1 126070170 126070467 -116593886 - AluSg SINE Alu -13 297 1 2133 229 55 80 chr1 126070467 126070780 -116593573 - L1MCb LINE L1 -5555 1009 623 350 95 16 16 chr1 126070929 126070992 -116593361 + LTR5 LTR ERVK 907 969 0 1358 141 31 0 chr1 126071110 126071365 -116592988 - L1MA9 LINE L1 -766 5380 5118 * 3431 177 14 12 chr1 126071364 126072020 -116592333 + L1MA9 LINE L1 5380 6036 -276 721 191 35 6 chr1 126072020 126072188 -116592165 + L1MA7 LINE L1 6112 6289 -2 269 256 44 33 chr1 126072203 126072293 -116592060 + MER5A DNA MER1_type 12 102 -87 204 231 0 0 chr1 126072451 126072503 -116591850 + GA-rich Low_complexity Low_complexity 2 53 0 1281 203 18 124 chr1 126073068 126073468 -116590885 - MLT1C LTR MaLR -71 396 46 2091 119 7 0 chr1 126073468 126073761 -116590592 - AluSx SINE Alu -17 295 1 1281 203 18 124 chr1 126073761 126073803 -116590550 - MLT1C LTR MaLR -421 46 1 254 311 151 46 chr1 126073803 126074041 -116590312 + L2 LINE L2 3051 3313 0 23 33 0 0 chr1 126074838 126074868 -116589485 + AT_rich Low_complexity Low_complexity 1 30 0 189 282 26 51 chr1 126075104 126075182 -116589171 + MIR SINE MIR 81 156 -106 * 219 298 57 48 chr1 126075169 126075293 -116589060 - MIR SINE MIR -6 256 132 996 209 108 18 chr1 126075622 126075899 -116588454 - LTR41 LTR ERVL -471 302 1 1374 291 89 88 chr1 126075899 126077565 -116586788 + MER110-int LTR ERV1 2941 4608 -39 288 312 65 14 chr1 126077920 126078058 -116586295 + MER110 LTR ERV1 234 378 -113 22 0 0 0 chr1 126078145 126078167 -116586186 + AT_rich Low_complexity Low_complexity 1 22 0 437 331 26 0 chr1 126078346 126078500 -116585853 - MIR SINE MIR 0 262 105 24 0 0 0 chr1 126078820 126078844 -116585509 + AT_rich Low_complexity Low_complexity 1 24 0 2549 177 15 134 chr1 126079710 126080533 -116583820 - L1MA9 LINE L1 -33 6279 5555 419 298 58 0 chr1 126080634 126080738 -116583615 - L1M3d LINE L1 -5352 539 430 469 293 7 29 chr1 126081042 126081182 -116583171 - L1M3de LINE L1 -5867 786 650 313 358 106 4 chr1 126081180 126081434 -116582919 - L1M3d LINE L1 -5607 284 5 * 202 256 0 0 chr1 126082021 126082064 -116582289 + A-rich Low_complexity Low_complexity 1 43 0 24391 103 6 3 chr1 126082535 126085882 -116578471 - HERVL LTR ERVL -378 5276 1920 26 50 0 0 chr1 126086211 126086251 -116578102 + AT_rich Low_complexity Low_complexity 1 40 0 296 289 52 10 chr1 126086457 126086554 -116577799 - L2 LINE L2 -297 3016 2916 2029 93 7 7 chr1 126086684 126086974 -116577379 + AluSc SINE Alu 10 299 -10 184 383 84 9 chr1 126087290 126087397 -116576956 - L2 LINE L2 -36 3236 3122 187 403 19 25 chr1 126087648 126087807 -116576546 - L2 LINE L2 -556 2758 2601 22 35 0 0 chr1 126088257 126088286 -116576067 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 126088302 126088332 -116576021 + AT_rich Low_complexity Low_complexity 1 30 0 38 39 0 0 chr1 126088858 126088910 -116575443 + AT_rich Low_complexity Low_complexity 1 52 0 500 291 50 64 chr1 126089499 126090063 -116574290 - HAL1 LINE L1 -96 2411 1856 195 129 0 0 chr1 126090342 126090373 -116573980 + (T)n Simple_repeat Simple_repeat 1 31 0 218 222 0 16 chr1 126090659 126090722 -116573631 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 226 347 11 0 chr1 126091419 126091514 -116572839 + MLT1J LTR MaLR 103 198 -313 21 0 0 0 chr1 126094011 126094032 -116570321 + AT_rich Low_complexity Low_complexity 1 21 0 1641 184 0 43 chr1 126094065 126094391 -116569962 + AluJo SINE Alu 1 312 0 22 35 0 0 chr1 126095088 126095117 -116569236 + AT_rich Low_complexity Low_complexity 1 29 0 1025 293 16 0 chr1 126095589 126095842 -116568511 + L1M1 LINE L1 1283 1539 -6026 960 238 116 64 chr1 126096328 126096811 -116567542 - L1MCa LINE L1 -5899 527 20 884 193 97 55 chr1 126097016 126097459 -116566894 + L1MA9 LINE L1 5695 6287 -25 2263 70 23 7 chr1 126097650 126097950 -116566403 + AluSp SINE Alu 2 306 -7 609 262 32 106 chr1 126098410 126098845 -116565508 + L1ME1 LINE L1 5738 6140 -26 366 259 68 0 chr1 126098730 126098877 -116565476 + L1MA10 LINE L1 6176 6332 -2 * 282 308 0 0 chr1 126099036 126099114 -116565239 + MER89-int LTR ERV1 3114 3191 -3610 265 331 67 28 chr1 126099459 126099637 -116564716 + MER89-int LTR ERV1 3546 3730 -3071 1108 347 46 37 chr1 126100136 126101050 -116563303 + MER89-int LTR ERV1 2021 2942 -1705 312 193 0 60 chr1 126101067 126101150 -116563203 - LTR41 LTR ERVL -12 761 684 21 0 0 0 chr1 126101310 126101331 -116563022 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr1 126101997 126102040 -116562313 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr1 126102882 126102909 -116561444 + AT_rich Low_complexity Low_complexity 1 27 0 952 227 5 0 chr1 126103091 126103289 -116561064 + MER3 DNA MER1_type 5 203 -6 812 155 1 19 chr1 126103396 126103552 -116560801 - THE1B LTR MaLR -225 150 1 10733 124 6 6 chr1 126103562 126105135 -116559218 - THE1B-int LTR MaLR -6 1574 1 2105 151 14 19 chr1 126105135 126105499 -116558854 - THE1B LTR MaLR 0 364 3 27 0 0 0 chr1 126106076 126106103 -116558250 + AT_rich Low_complexity Low_complexity 1 27 0 864 353 98 39 chr1 126106656 126107915 -116556438 + L2 LINE L2 679 2012 -1302 366 354 34 62 chr1 126107948 126108239 -116556114 + L2 LINE L2 2550 2832 -482 28 29 0 0 chr1 126108265 126108300 -116556053 + AT_rich Low_complexity Low_complexity 1 35 0 1585 175 49 25 chr1 126108335 126108660 -116555693 - THE1B LTR MaLR 0 364 32 5604 112 15 9 chr1 126108760 126109575 -116554778 - THE1B-int LTR MaLR -760 820 1 1889 177 28 19 chr1 126109575 126109936 -116554417 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr1 126110140 126110160 -116554193 + (AGATG)n Simple_repeat Simple_repeat 3 22 0 1140 325 58 40 chr1 126110179 126110423 -116553930 + L2 LINE L2 1124 1362 -1952 1656 199 3 0 chr1 126110423 126110725 -116553628 - AluJb SINE Alu -9 303 1 1140 325 58 40 chr1 126110725 126111102 -116553251 + L2 LINE L2 1362 1756 -1558 528 313 46 90 chr1 126111117 126111462 -116552891 + L2 LINE L2 2558 2887 -427 21 36 0 0 chr1 126111773 126111801 -116552552 + AT_rich Low_complexity Low_complexity 1 28 0 670 265 84 54 chr1 126112460 126112792 -116551561 - L1MCc LINE L1 -5202 1221 880 567 293 116 63 chr1 126112880 126113439 -116550914 - L1MCc LINE L1 -5824 599 11 603 286 59 70 chr1 126113728 126114015 -116550338 + L2 LINE L2 701 984 -2330 352 286 22 0 chr1 126114022 126114113 -116550240 - L2 LINE L2 0 3272 3180 26 30 0 0 chr1 126114164 126114197 -116550156 + AT_rich Low_complexity Low_complexity 1 33 0 1473 260 75 73 chr1 126114288 126115104 -116549249 - L1ME1 LINE L1 -5 6230 5418 1517 211 25 0 chr1 126115104 126115388 -116548965 + AluSx SINE Alu 1 291 -21 1473 260 75 73 chr1 126115388 126115673 -116548680 - L1ME1 LINE L1 -817 5418 5135 573 314 77 0 chr1 126115673 126115880 -116548473 - MER58A DNA MER1_type -1 223 1 1473 260 75 73 chr1 126115880 126116161 -116548192 - L1ME1 LINE L1 -1100 5135 4838 262 197 0 40 chr1 126116707 126116783 -116547570 - L1ME1 LINE L1 -3221 2994 2922 27 81 0 0 chr1 126116804 126116866 -116547487 + AT_rich Low_complexity Low_complexity 1 62 0 765 329 46 31 chr1 126116913 126117590 -116546763 - L1ME1 LINE L1 -4399 1997 1311 5607 194 2 11 chr1 126117590 126118725 -116545628 + L1P LINE L1 1332 2456 -3690 13672 149 5 5 chr1 126118867 126121182 -116543171 + L1P LINE L1 2466 4780 -1366 9002 216 40 24 chr1 126121182 126123166 -116541187 - ERVL-B1 LTR ERVL -501 5263 3249 5440 242 76 10 chr1 126123268 126124985 -116539368 - ERVL-B1 LTR ERVL -3888 1876 2 1352 246 89 43 chr1 126124986 126125426 -116538927 - MLT2B1 LTR ERVL 0 520 61 2151 129 0 3 chr1 126126477 126126788 -116537565 - AluSx SINE Alu 0 312 3 6890 176 148 45 chr1 126127026 126128616 -116535737 - MER52A LTR ERV1 0 1755 1 21 57 0 0 chr1 126129179 126129214 -116535139 + AT_rich Low_complexity Low_complexity 1 35 0 290 389 40 0 chr1 126129251 126129400 -116534953 + MIR3 SINE MIR 47 201 -7 22 0 0 0 chr1 126131447 126131469 -116532884 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1 126132625 126132651 -116531702 + AT_rich Low_complexity Low_complexity 1 26 0 268 136 0 0 chr1 126132655 126132699 -116531654 - 5S rRNA rRNA -76 45 2 493 312 123 24 chr1 126134492 126135589 -116528764 - L1MEc LINE L1 -2876 3270 2114 856 209 86 116 chr1 126135850 126136151 -116528202 + MER66A LTR ERV1 187 478 0 848 133 7 7 chr1 126186298 126186441 -116477912 + L1PA6 LINE L1 5994 6136 -18 34 0 0 0 chr1 126186444 126186478 -116477875 + AT_rich Low_complexity Low_complexity 1 34 0 683 345 79 38 chr1 126186509 126187069 -116477284 - L2 LINE L2 -480 2834 2252 21 36 0 0 chr1 126188375 126188403 -116475950 + AT_rich Low_complexity Low_complexity 1 28 0 227 320 82 25 chr1 126189027 126189149 -116475204 + MIR SINE MIR 124 252 -10 249 231 39 87 chr1 126189675 126189695 -116474658 - LTR33A LTR ERVL -365 158 139 1687 209 34 6 chr1 126189695 126190050 -116474303 - MLT1A1 LTR MaLR 0 365 1 249 231 39 87 chr1 126190050 126190133 -116474220 - LTR33A LTR ERVL -384 139 60 22 35 0 0 chr1 126190795 126190824 -116473529 + AT_rich Low_complexity Low_complexity 1 29 0 390 322 89 35 chr1 126191073 126191387 -116472966 - L1ME LINE L1 -365 5801 5471 21 0 0 0 chr1 126191429 126191450 -116472903 + AT_rich Low_complexity Low_complexity 1 21 0 2367 69 0 10 chr1 126191712 126192016 -116472337 - AluY SINE Alu -10 301 1 227 305 85 51 chr1 126192481 126192540 -116471813 - MIR SINE MIR -44 218 162 1375 193 94 37 chr1 126192540 126192892 -116471461 - MLT1A2 LTR MaLR -2 372 1 227 305 85 51 chr1 126192892 126192950 -116471403 - MIR SINE MIR -100 162 97 231 229 110 37 chr1 126193555 126193664 -116470689 - FAM SINE Alu -1 174 58 189 154 0 0 chr1 126193784 126193823 -116470530 + T-rich Low_complexity Low_complexity 2 40 0 21 0 0 0 chr1 126193882 126193903 -116470450 + AT_rich Low_complexity Low_complexity 1 21 0 204 227 0 0 chr1 126195028 126195072 -116469281 - L2 LINE L2 0 3313 3270 931 307 97 66 chr1 126195120 126195895 -116468458 + L1ME3A LINE L1 4023 4853 -1293 2314 45 0 7 chr1 126195895 126196185 -116468168 + L1PA4 LINE L1 5868 6155 0 931 307 97 66 chr1 126196185 126196652 -116467701 + L1ME3A LINE L1 4853 5304 -842 366 266 103 74 chr1 126196931 126197073 -116467280 + L1ME3A LINE L1 5291 5427 -735 1085 214 22 5 chr1 126197073 126197297 -116467056 + MER46A DNA MER2_type 5 232 -4 366 266 103 74 chr1 126197297 126197466 -116466887 + L1ME3A LINE L1 5427 5611 -551 2151 91 0 7 chr1 126197472 126197770 -116466583 - AluY SINE Alu -15 296 1 242 322 51 6 chr1 126197875 126198052 -116466301 + L1ME3A LINE L1 5767 5951 -219 1846 146 42 0 chr1 126198387 126198675 -116465678 - AluSx SINE Alu -12 300 1 198 0 0 0 chr1 126200033 126200055 -116464298 + (T)n Simple_repeat Simple_repeat 1 22 0 3202 137 28 3 chr1 126200757 126201335 -116463018 - L1MA5A LINE L1 -3 6294 5703 402 292 66 9 chr1 126202453 126202679 -116461674 - HAL1 LINE L1 -898 1609 1371 588 313 26 40 chr1 126202702 126203050 -116461303 - HAL1 LINE L1 -1293 1214 872 386 343 98 13 chr1 126203410 126203646 -116460707 - HAL1 LINE L1 -2024 483 228 21 71 0 0 chr1 126203785 126203827 -116460526 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr1 126204042 126204077 -116460276 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chr1 126204272 126204321 -116460032 + AT_rich Low_complexity Low_complexity 1 49 0 25 90 0 0 chr1 126204500 126204567 -116459786 + AT_rich Low_complexity Low_complexity 1 67 0 203 384 47 12 chr1 126205194 126205280 -116459073 + L2 LINE L2 3161 3249 -23 2201 186 55 5 chr1 126205859 126206263 -116458090 - MSTB LTR MaLR 0 426 3 437 223 8 0 chr1 126206398 126206528 -116457825 + (TA)n Simple_repeat Simple_repeat 2 132 0 2813 7 0 0 chr1 126206612 126206920 -116457433 + AluYa5 SINE Alu 1 308 -3 288 200 0 0 chr1 126206972 126207042 -116457311 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr1 126207203 126207229 -116457124 + AT_rich Low_complexity Low_complexity 1 26 0 279 167 15 45 chr1 126208585 126208651 -116455702 + MADE1 DNA Mariner 17 80 0 284 172 0 16 chr1 126208824 126208888 -116455465 + (TA)n Simple_repeat Simple_repeat 1 63 0 1494 128 0 9 chr1 126209579 126209798 -116454555 - AluSx SINE Alu -95 217 1 994 176 165 89 chr1 126209909 126210267 -116454086 + MLT1B LTR MaLR 1 385 -5 21 0 0 0 chr1 126210352 126210373 -116453980 + AT_rich Low_complexity Low_complexity 1 21 0 219 94 38 19 chr1 126210727 126210780 -116453573 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 654 325 138 0 chr1 126211380 126211685 -116452668 + L2 LINE L2 2545 2891 -423 365 282 59 18 chr1 126211682 126211852 -116452501 + L2 LINE L2 3058 3234 -79 * 287 291 19 0 chr1 126212642 126212745 -116451608 - L1MC4a LINE L1 -1093 6715 6611 23 0 0 0 chr1 126213098 126213121 -116451232 + AT_rich Low_complexity Low_complexity 1 23 0 614 304 68 16 chr1 126213261 126213646 -116450707 - L1MC4a LINE L1 -2121 5687 5283 389 325 83 40 chr1 126213972 126214350 -116450003 + L1MCa LINE L1 1475 2007 -4419 1076 142 9 14 chr1 126214839 126215050 -116449303 - L1PB1 LINE L1 0 6151 5942 2152 154 60 34 chr1 126215084 126215499 -116448854 + MSTB LTR MaLR 1 426 0 309 185 0 0 chr1 126216539 126216604 -116447749 + (TA)n Simple_repeat Simple_repeat 2 66 0 894 205 20 5 chr1 126216824 126217019 -116447334 + L1MA8 LINE L1 3 200 -6663 2567 142 318 20 chr1 126217019 126217658 -116446695 + L1MA8 LINE L1 634 1462 -5401 * 2821 224 6 17 chr1 126217657 126218346 -116446007 + L1MA6 LINE L1 4522 5202 -944 2206 133 11 3 chr1 126218347 126218701 -116445652 + L1PB1 LINE L1 5794 6150 -1 745 142 28 14 chr1 126218739 126218880 -116445473 - MER2 DNA MER2_type -139 206 64 11961 168 39 28 chr1 126218948 126219012 -116445341 - Tigger1 DNA MER2_type 0 2418 2356 2098 97 3 21 chr1 126219012 126219302 -116445051 + AluSx SINE Alu 6 290 -22 539 41 27 0 chr1 126219309 126219382 -116444971 + (TAAAA)n Simple_repeat Simple_repeat 5 79 0 11961 168 39 28 chr1 126219382 126219819 -116444534 - Tigger1 DNA MER2_type -67 2351 1920 1846 148 14 0 chr1 126219819 126220110 -116444243 + AluSx SINE Alu 1 295 -17 11961 168 39 28 chr1 126220110 126221991 -116442362 - Tigger1 DNA MER2_type -498 1920 1 5132 190 19 14 chr1 126222853 126223825 -116440528 - L1PA16 LINE L1 -9 6157 5192 191 88 29 0 chr1 126223825 126223859 -116440494 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5132 190 19 14 chr1 126223859 126224965 -116439388 - L1PA16 LINE L1 -974 5192 4060 180 111 0 0 chr1 126225619 126225646 -116438707 + (CA)n Simple_repeat Simple_repeat 2 28 0 1236 199 27 117 chr1 126225667 126226069 -116438284 + L1MA6 LINE L1 5678 6043 -257 3009 130 22 24 chr1 126226084 126226496 -116437857 + L1PA7 LINE L1 8 420 -6041 297 68 0 0 chr1 126226496 126226540 -116437813 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3009 130 22 24 chr1 126226540 126226620 -116437733 + L1PA7 LINE L1 420 499 -5962 * 9746 129 22 7 chr1 126226604 126228114 -116436239 + L1MA8 LINE L1 2307 3793 -3214 11967 113 2 62 chr1 126228114 126230870 -116433483 + L1PA7 LINE L1 3783 6469 0 9746 129 22 7 chr1 126230870 126231126 -116433227 + L1MA8 LINE L1 3793 6993 -14 308 188 14 0 chr1 126231139 126231208 -116433145 + (TA)n Simple_repeat Simple_repeat 1 70 0 252 173 0 0 chr1 126231239 126231291 -116433062 + L1MC4 LINE L1 6652 6703 -1339 4209 157 23 11 chr1 126231306 126232041 -116432312 + Tigger2 DNA MER2_type 1 744 -1974 1283 195 16 12 chr1 126232111 126232368 -116431985 + Tigger2 DNA MER2_type 2461 2718 0 24 0 0 0 chr1 126232371 126232395 -116431958 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr1 126232820 126232856 -116431497 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 126233207 126233237 -116431116 + AT_rich Low_complexity Low_complexity 1 30 0 227 288 0 0 chr1 126233501 126233567 -116430786 + (TA)n Simple_repeat Simple_repeat 1 66 0 26 64 0 0 chr1 126234275 126234322 -116430031 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr1 126234450 126234480 -116429873 + AT_rich Low_complexity Low_complexity 1 30 0 35 41 0 0 chr1 126234590 126234639 -116429714 + AT_rich Low_complexity Low_complexity 1 49 0 213 284 0 0 chr1 126235547 126235614 -116428739 + CT-rich Low_complexity Low_complexity 4 70 0 483 18 0 0 chr1 126235614 126235670 -116428683 + (CA)n Simple_repeat Simple_repeat 1 56 0 2297 99 0 3 chr1 126235826 126236140 -116428213 + AluSq SINE Alu 1 313 0 27 0 0 0 chr1 126237088 126237115 -116427238 + AT_rich Low_complexity Low_complexity 1 27 0 23 68 0 0 chr1 126237162 126237206 -116427147 + AT_rich Low_complexity Low_complexity 1 44 0 12773 180 35 26 chr1 126237551 126242318 -116422035 + L1MA1 LINE L1 1916 6771 -950 1998 148 7 0 chr1 126242318 126242622 -116421731 + AluSx SINE Alu 5 310 -2 12773 180 35 26 chr1 126242622 126243583 -116420770 + L1MA1 LINE L1 6771 7721 0 1217 173 16 0 chr1 126243583 126243833 -116420520 + L1MA2 LINE L1 6047 6304 0 395 275 72 30 chr1 126244231 126244574 -116419779 + L1M4c LINE L1 1719 2163 -4221 2904 107 18 5 chr1 126244668 126245108 -116419245 - L1MA3 LINE L1 -278 6027 5582 372 303 61 0 chr1 126245122 126245254 -116419099 + L1M4c LINE L1 2169 2308 -4076 399 21 0 0 chr1 126245254 126245302 -116419051 + (TA)n Simple_repeat Simple_repeat 1 48 0 30 59 0 0 chr1 126245333 126245384 -116418969 + AT_rich Low_complexity Low_complexity 1 51 0 1845 258 37 32 chr1 126245387 126246151 -116418202 + L1M4c LINE L1 2363 3133 -3249 2525 76 0 0 chr1 126246152 126246480 -116417873 + L1PA7 LINE L1 5782 6109 -45 26 50 0 0 chr1 126247284 126247324 -116417029 + AT_rich Low_complexity Low_complexity 1 40 0 180 319 128 44 chr1 126247677 126247950 -116416403 + L3 LINE CR1 993 1288 -289 385 336 137 18 chr1 126248497 126248839 -116415514 + L2 LINE L2 721 1103 -2211 2446 56 0 7 chr1 126249276 126249580 -116414773 + AluY SINE Alu 1 302 -9 189 0 0 0 chr1 126249580 126249601 -116414752 + (TA)n Simple_repeat Simple_repeat 2 22 0 388 357 36 40 chr1 126249707 126249956 -116414397 + L2 LINE L2 1220 1467 -1847 211 269 19 0 chr1 126250006 126250058 -116414295 + L2 LINE L2 1583 1635 -1679 250 314 26 52 chr1 126250160 126250313 -116414040 + L2 LINE L2 1622 1770 -1544 624 164 0 35 chr1 126250420 126250563 -116413790 - AluJb SINE Alu 0 310 172 290 352 14 14 chr1 126250682 126250824 -116413529 + ERVL LTR ERVL 507 648 -4348 643 336 48 43 chr1 126251099 126251474 -116412879 + ERVL LTR ERVL 2103 2479 -2517 596 389 54 26 chr1 126251990 126252744 -116411609 + ERVL LTR ERVL 4143 4917 -847 248 329 12 24 chr1 126253379 126253464 -116410889 + LTR16A LTR ERVL 111 194 -256 21 0 0 0 chr1 126254305 126254326 -116410027 + AT_rich Low_complexity Low_complexity 1 21 0 6106 64 144 66 chr1 126255704 126256791 -116407562 - MER11A LTR ERVK 0 1266 1 8899 167 26 31 chr1 126257029 126258428 -116405925 - L1PA14 LINE L1 -5 6156 4752 1594 165 73 31 chr1 126258428 126258617 -116405736 + THE1C LTR MaLR 3 183 -192 231 36 0 0 chr1 126258617 126258645 -116405708 + (TC)n Simple_repeat Simple_repeat 1 28 0 1594 165 73 31 chr1 126258645 126258813 -116405540 + THE1C LTR MaLR 183 375 0 8899 167 26 31 chr1 126258813 126259913 -116404440 - L1PA14 LINE L1 -1409 4752 3679 383 0 21 0 chr1 126259913 126259960 -116404393 + (TG)n Simple_repeat Simple_repeat 1 48 0 8899 167 26 31 chr1 126259960 126260277 -116404076 - L1PA14 LINE L1 -2482 3679 3362 5293 226 27 14 chr1 126260275 126261658 -116402695 + L1PA14 LINE L1 1980 3380 -2766 * 1602 197 4 0 chr1 126261663 126261937 -116402416 + AluSx SINE Alu 1 275 -37 242 29 29 0 chr1 126261937 126261972 -116402381 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 325 317 53 9 chr1 126262542 126262730 -116401623 - L1MC/D LINE L1 -656 5508 5360 361 264 29 17 chr1 126262749 126262971 -116401382 + (TA)n Simple_repeat Simple_repeat 1 224 0 5325 183 51 36 chr1 126262991 126263470 -116400883 - Tigger3b DNA MER2_type -1797 1231 761 5564 40 1 0 chr1 126263470 126264145 -116400208 - L1PA4 LINE L1 0 6155 5480 5325 183 51 36 chr1 126264145 126264878 -116399475 - Tigger3b DNA MER2_type -2267 761 1 2480 243 53 8 chr1 126264896 126265518 -116398835 - MER82 DNA MER2_type 0 653 4 222 37 0 0 chr1 126265560 126265587 -116398766 + (CA)n Simple_repeat Simple_repeat 2 28 0 408 236 8 8 chr1 126265594 126265721 -116398632 - L1MC/D LINE L1 -898 5248 5122 265 301 82 20 chr1 126265847 126266296 -116398057 + L1M4 LINE L1 2974 3450 -2696 180 0 0 0 chr1 126266488 126266508 -116397845 + (TTG)n Simple_repeat Simple_repeat 2 21 0 253 335 57 16 chr1 126266589 126266783 -116397570 - L1MDa LINE L1 -4675 2046 1845 795 229 85 33 chr1 126266788 126267184 -116397169 - MLT1A1 LTR MaLR 0 365 1 420 283 55 20 chr1 126267193 126267647 -116396706 - L1MDa LINE L1 -4816 1724 1315 1642 150 27 0 chr1 126267875 126268175 -116396178 - L1MA5 LINE L1 -12 6288 5981 22 35 0 0 chr1 126269684 126269713 -116394640 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr1 126271004 126271041 -116393312 + AT_rich Low_complexity Low_complexity 1 37 0 280 129 50 0 chr1 126271564 126271665 -116392688 + (TA)n Simple_repeat Simple_repeat 2 107 0 217 131 0 49 chr1 126271665 126271726 -116392627 + (TTTAA)n Simple_repeat Simple_repeat 3 60 0 240 177 32 0 chr1 126271736 126271798 -116392555 + (TA)n Simple_repeat Simple_repeat 2 65 0 195 42 0 0 chr1 126272459 126272483 -116391870 + (T)n Simple_repeat Simple_repeat 1 24 0 511 290 104 13 chr1 126272562 126272793 -116391560 + L2 LINE L2 1662 1913 -1401 263 327 144 13 chr1 126272843 126272996 -116391357 + L2 LINE L2 2123 2295 -1019 2178 136 0 0 chr1 126273005 126273315 -116391038 + AluSx SINE Alu 1 310 -2 1013 188 0 0 chr1 126273315 126273485 -116390868 + AluSg/x SINE Alu 132 301 -9 691 263 106 48 chr1 126273518 126273808 -116390545 + MLT1C LTR MaLR 6 335 -132 262 250 0 0 chr1 126273809 126273869 -116390484 + MLT1C LTR MaLR 446 505 0 499 323 123 52 chr1 126273870 126274814 -116389539 + L2 LINE L2 2316 3313 0 289 273 136 65 chr1 126274928 126275082 -116389271 + MLT1H LTR MaLR 120 284 -265 24 67 0 0 chr1 126275822 126275867 -116388486 + AT_rich Low_complexity Low_complexity 1 45 0 1866 142 4 0 chr1 126275929 126276246 -116388107 - AluSx SINE Alu 0 326 9 39 60 0 0 chr1 126276439 126276506 -116387847 + AT_rich Low_complexity Low_complexity 1 67 0 200 226 161 43 chr1 126276670 126276763 -116387590 - MER91C DNA MER1_type -11 129 26 341 321 78 37 chr1 126276800 126277071 -116387282 - L1ME LINE L1 -573 5589 5308 580 246 68 81 chr1 126277957 126278193 -116386160 - MIR SINE MIR 0 262 30 272 208 14 0 chr1 126278353 126278425 -116385928 + MER5C DNA MER1_type 212 284 -40 756 243 59 5 chr1 126278453 126278655 -116385698 - MER58A DNA MER1_type -8 216 4 221 81 0 27 chr1 126278715 126278752 -116385601 + (TTATA)n Simple_repeat Simple_repeat 2 37 0 187 322 85 34 chr1 126278780 126278898 -116385455 + MIR SINE MIR 23 146 -62 1602 168 1 5 chr1 126279261 126279542 -116384811 - L1ME LINE L1 -1862 4284 4005 761 285 179 6 chr1 126280804 126281123 -116383230 + L2 LINE L2 2255 2628 -686 715 332 55 29 chr1 126281190 126281570 -116382783 + L2 LINE L2 2825 3214 -99 14809 183 28 44 chr1 126282357 126282657 -116381696 + L1MA1 LINE L1 544 847 -6876 1006 43 0 28 chr1 126282657 126282798 -116381555 - AluY SINE Alu 0 311 175 14809 183 28 44 chr1 126282798 126283422 -116380931 + L1MA1 LINE L1 847 1480 -6243 2360 19 0 0 chr1 126283422 126283686 -116380667 + AluYb8 SINE Alu 35 298 -20 14809 183 28 44 chr1 126283686 126288448 -116375905 + L1MA1 LINE L1 1480 6254 -1469 1869 151 17 0 chr1 126288448 126288740 -116375613 - AluSq SINE Alu -16 297 1 14809 183 28 44 chr1 126288740 126289839 -116374514 + L1MA1 LINE L1 6254 7369 -354 2052 129 3 24 chr1 126289931 126290302 -116374051 + L1MA1 LINE L1 7359 7721 0 275 281 56 0 chr1 126290461 126290550 -116373803 - L1MD3 LINE L1 -33 7962 7869 270 263 26 103 chr1 126291434 126291590 -116372763 + MIR SINE MIR 119 262 0 29 0 0 0 chr1 126292190 126292219 -116372134 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr1 126292915 126292946 -116371407 + AT_rich Low_complexity Low_complexity 1 31 0 470 326 53 33 chr1 126293954 126294199 -116370154 - L2 LINE L2 -1955 1359 1110 183 371 34 0 chr1 126294233 126294322 -116370031 - L2 LINE L2 -2202 1112 1021 691 194 0 8 chr1 126294589 126294723 -116369630 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chr1 126295247 126295279 -116369074 + AT_rich Low_complexity Low_complexity 1 32 0 356 291 80 26 chr1 126296320 126296471 -116367882 - MIR SINE MIR -2 260 102 21 36 0 0 chr1 126296666 126296694 -116367659 + AT_rich Low_complexity Low_complexity 1 28 0 1705 159 3 7 chr1 126296928 126297211 -116367142 + AluSq SINE Alu 11 292 -21 27 81 0 0 chr1 126297222 126297284 -116367069 + AT_rich Low_complexity Low_complexity 1 62 0 23909 38 16 0 chr1 126298869 126302575 -116361778 + L1PA5 LINE L1 2422 6145 -9 197 151 19 0 chr1 126302575 126302628 -116361725 + (TA)n Simple_repeat Simple_repeat 1 54 0 518 306 50 50 chr1 126302694 126302975 -116361378 - MLT1J LTR MaLR -2 509 229 1221 310 163 28 chr1 126303133 126304072 -116360281 + L2 LINE L2 2097 3165 -148 253 130 0 0 chr1 126304110 126304156 -116360197 - L1MC4 LINE L1 -1339 6703 6658 201 287 42 60 chr1 126304213 126304380 -116359973 + L2 LINE L2 3146 3309 -4 1096 252 42 37 chr1 126304737 126305138 -116359215 + LTR52 LTR ERVL 1 403 -18 651 230 42 31 chr1 126305211 126305402 -116358951 + L1M1 LINE L1 13 205 -7360 * 11296 199 49 13 chr1 126305383 126305471 -116358882 + L1M1 LINE L1 16 99 -7466 297 0 0 0 chr1 126305471 126305504 -116358849 + (CA)n Simple_repeat Simple_repeat 2 34 0 11296 199 49 13 chr1 126305504 126307770 -116356583 + L1M1 LINE L1 99 2573 -4992 1825 168 7 3 chr1 126307770 126308073 -116356280 + AluSx SINE Alu 1 304 -8 11296 199 49 13 chr1 126308073 126308259 -116356094 + L1M1 LINE L1 2573 2751 -4814 2514 201 30 18 chr1 126308238 126309189 -116355164 + L1M1 LINE L1 3136 4093 -3472 * 850 220 31 9 chr1 126309194 126309417 -116354936 + L1M1 LINE L1 5239 5466 -2099 * 3051 220 171 24 chr1 126309413 126310407 -116353946 - L1 LINE L1 -2334 3812 2673 558 305 117 54 chr1 126311147 126311576 -116352777 - L2 LINE L2 -534 2780 2325 376 340 125 10 chr1 126311599 126311799 -116352554 - L2 LINE L2 -1132 2182 1960 24 0 0 0 chr1 126311961 126311985 -116352368 + AT_rich Low_complexity Low_complexity 1 24 0 2623 69 3 0 chr1 126312356 126312705 -116351648 - L1PA7 LINE L1 -2 6152 5803 23 33 0 0 chr1 126313202 126313232 -116351121 + AT_rich Low_complexity Low_complexity 1 30 0 2086 119 0 3 chr1 126313488 126313782 -116350571 + AluSc SINE Alu 1 293 -16 704 264 38 81 chr1 126314997 126315424 -116348929 - L2 LINE L2 -4 3309 2880 * 6958 76 12 6 chr1 126315395 126317098 -116347255 + L1PA6 LINE L1 5772 7477 -96 6364 33 0 0 chr1 126367106 126367863 -116296490 - L1PA2 LINE L1 -100 6055 5299 5691 31 3 0 chr1 126367861 126368545 -116295808 + L1P LINE L1 4427 5112 -1034 * 1663 62 5 0 chr1 126368692 126368916 -116295437 + L1P LINE L1 5028 5252 -894 945 167 4 0 chr1 126368916 126369347 -116295006 - ALR/Alpha Satellite centromeric 0 432 1 306 303 84 8 chr1 126369459 126369578 -116294775 - MIR3 SINE MIR -15 193 66 1166 238 74 40 chr1 126370077 126370497 -116293856 - L1MD2 LINE L1 -18 6341 5908 22 35 0 0 chr1 126371047 126371076 -116293277 + AT_rich Low_complexity Low_complexity 1 29 0 36560 63 30 2 chr1 126371641 126376460 -116287893 - L1P LINE L1 -1193 4953 1 1259 132 2 1 chr1 126376473 126378712 -116285641 + ALR/Alpha Satellite centromeric 1 2241 -5 1100 125 2 0 chr1 126378768 126379121 -116285232 + ALR/Alpha Satellite centromeric 1 353 -69 27991 59 39 2 chr1 126379223 126382936 -116281417 - L1P LINE L1 -2298 3848 1 1316 154 5 1 chr1 126382942 126391812 -116272541 - ALR/Alpha Satellite centromeric 0 8906 1 8525 57 1 0 chr1 126391812 126392888 -116271465 - L1P LINE L1 -1142 5004 3928 192 40 0 0 chr1 126392899 126392924 -116271429 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 9228 38 0 0 chr1 126392924 126394795 -116269558 - L1PA3 LINE L1 -24 6131 4261 13065 179 30 24 chr1 126394895 126395588 -116268765 + L1MA2 LINE L1 1833 2520 -5203 1809 168 0 7 chr1 126395588 126395894 -116268459 - AluSx SINE Alu 0 304 1 13065 179 30 24 chr1 126395894 126401051 -116263302 + L1MA2 LINE L1 2520 7723 0 399 153 15 30 chr1 126402550 126402681 -116261672 + (TA)n Simple_repeat Simple_repeat 1 129 0 333 381 9 0 chr1 126403211 126403316 -116261037 - L2 LINE L2 -40 3232 3127 1941 190 51 36 chr1 126404475 126404890 -116259463 + MSTA LTR MaLR 1 421 -7 7975 188 34 33 chr1 126404897 126406547 -116257806 + MSTA-int LTR MaLR 1 1651 0 2115 201 29 7 chr1 126406547 126406966 -116257387 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr1 126408441 126408465 -116255888 + AT_rich Low_complexity Low_complexity 1 24 0 22 88 0 0 chr1 126408632 126408689 -116255664 + AT_rich Low_complexity Low_complexity 1 57 0 239 331 13 33 chr1 126411530 126411681 -116252672 - L1MEc LINE L1 -6134 262 115 256 325 16 8 chr1 126411840 126411963 -116252390 + LTR67 LTR ERVL 434 557 0 22 35 0 0 chr1 126412136 126412165 -116252188 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 126412931 126412961 -116251392 + AT_rich Low_complexity Low_complexity 1 30 0 277 345 178 5 chr1 126413114 126413305 -116251048 - MIR SINE MIR -11 251 28 364 293 133 16 chr1 126413470 126413658 -116250695 + MIR SINE MIR 3 212 -50 24 0 0 0 chr1 126414293 126414317 -116250036 + AT_rich Low_complexity Low_complexity 1 24 0 487 341 56 20 chr1 126414750 126414999 -116249354 - MIR SINE MIR 0 262 5 23 0 0 0 chr1 126415306 126415329 -116249024 + AT_rich Low_complexity Low_complexity 1 23 0 3154 138 16 26 chr1 126415582 126416359 -116247994 - L1MA6 LINE L1 -474 5826 5053 2498 187 12 2 chr1 126416359 126416847 -116247506 + L1MA6 LINE L1 5803 6300 0 22 0 0 0 chr1 126416857 126416879 -116247474 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 126416951 126416979 -116247374 + AT_rich Low_complexity Low_complexity 1 28 0 643 291 167 30 chr1 126417349 126417374 -116246979 + L1 LINE L1 2690 2710 -3436 195 42 0 0 chr1 126417374 126417398 -116246955 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 643 291 167 30 chr1 126417398 126418391 -116245962 + L1 LINE L1 2710 3847 -2299 24 24 0 24 chr1 126418391 126418413 -116245940 + AT_rich Low_complexity Low_complexity 1 23 -18 2138 116 0 0 chr1 126418413 126418698 -116245655 - AluSc SINE Alu -24 285 1 24 24 0 24 chr1 126418698 126418717 -116245636 + AT_rich Low_complexity Low_complexity 23 41 0 389 155 14 0 chr1 126418776 126418847 -116245506 - MER51-int LTR ERV1 -971 6845 6774 * 3342 120 14 0 chr1 126418831 126419314 -116245039 + MER57-int LTR ERV1 6661 7150 -387 590 174 25 8 chr1 126419314 126419435 -116244918 + LTR54B LTR ERV1 5 127 -371 1432 73 126 53 chr1 126419435 126419682 -116244671 + MER57B-int LTR ERV1 7272 7536 -1 2466 150 18 2 chr1 126419683 126420083 -116244270 + MER57B LTR ERV1 1 406 -28 758 83 9 0 chr1 126420133 126420241 -116244112 + L1MA5A LINE L1 5369 5477 -820 2237 133 41 0 chr1 126420241 126420629 -116243724 + L1MA5A LINE L1 5891 6296 -1 338 309 43 62 chr1 126420658 126421030 -116243323 + L1 LINE L1 3974 4338 -1808 10274 222 69 24 chr1 126421047 126422969 -116241384 - L1 LINE L1 -941 5387 3552 180 77 0 0 chr1 126422969 126422995 -116241358 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 10274 222 69 24 chr1 126422995 126423907 -116240446 - L1 LINE L1 -2776 3552 2682 1535 197 0 20 chr1 126423907 126424207 -116240146 - AluJb SINE Alu -18 294 1 10274 222 69 24 chr1 126424207 126424790 -116239563 - L1 LINE L1 -3646 2682 2126 189 0 0 0 chr1 126424790 126424811 -116239542 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 10274 222 69 24 chr1 126424811 126426549 -116237804 - L1 LINE L1 -4202 2126 3 333 62 0 0 chr1 126426806 126426854 -116237499 + (CA)n Simple_repeat Simple_repeat 2 49 0 279 306 16 16 chr1 126426868 126426989 -116237364 + ERVL LTR ERVL 5245 5365 -399 665 346 72 26 chr1 126427141 126427638 -116236715 + LTR33 LTR ERVL 2 521 0 24 0 0 0 chr1 126428693 126428717 -116235636 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 126429983 126430006 -116234347 + AT_rich Low_complexity Low_complexity 1 23 0 230 233 75 33 chr1 126430597 126430717 -116233636 - L1ME LINE L1 -299 5822 5698 970 178 0 6 chr1 126430802 126430965 -116233388 - AluJb SINE Alu -17 295 134 1660 89 5 0 chr1 126430977 126431201 -116233152 - AluSq SINE Alu -3 310 86 226 213 64 0 chr1 126431302 126431349 -116233004 - AluJ/monomer SINE Alu -83 50 1 2016 111 3 40 chr1 126431393 126431717 -116232636 + AluSx SINE Alu 1 312 0 317 293 71 7 chr1 126431835 126431975 -116232378 - L1ME LINE L1 -841 5305 5157 740 230 34 0 chr1 126431990 126432138 -116232215 - FRAM SINE Alu -23 153 1 540 290 7 0 chr1 126432148 126432164 -116232189 - L1MA10 LINE L1 -3 6331 6316 1943 277 46 38 chr1 126432164 126432950 -116231403 - L1ME1 LINE L1 -11 6224 5433 1975 236 20 18 chr1 126433010 126433514 -116230839 + MLT1D LTR MaLR 1 505 0 1598 272 23 35 chr1 126433514 126434295 -116230058 + MLT1D-int LTR MaLR 1 657 -714 998 241 41 38 chr1 126434299 126434590 -116229763 + MLT1D LTR MaLR 214 505 0 734 268 49 14 chr1 126434605 126434889 -116229464 - L1ME1 LINE L1 -874 5341 5048 1159 231 116 40 chr1 126435057 126435718 -116228635 - L1ME1 LINE L1 -3387 2828 2116 1150 262 41 51 chr1 126435718 126436226 -116228127 - MLT1D LTR MaLR -2 503 1 1159 231 116 40 chr1 126436226 126436513 -116227840 - L1ME1 LINE L1 -4099 2116 1852 496 120 0 0 chr1 126436514 126436589 -116227764 - L1MA3 LINE L1 0 6305 6231 249 57 0 0 chr1 126436608 126436643 -116227710 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 966 107 7 0 chr1 126436660 126436810 -116227543 - L1MA3 LINE L1 -368 5937 5787 20651 159 24 14 chr1 126436811 126440367 -116223986 - L1M1 LINE L1 -3962 3603 12 2850 277 86 51 chr1 126440401 126442060 -116222293 - L1ME1 LINE L1 -4619 1777 60 57 28 0 0 chr1 126442082 126442153 -116222200 + AT_rich Low_complexity Low_complexity 1 71 0 248 344 23 55 chr1 126442549 126442677 -116221676 + L2 LINE L2 3116 3239 -33 200 314 65 78 chr1 126442823 126443132 -116221221 + L2 LINE L2 2201 2505 -809 671 313 116 8 chr1 126443435 126443703 -116220650 + LTR33 LTR ERVL 46 342 -179 330 354 76 46 chr1 126446271 126446599 -116217754 + HAL1 LINE L1 356 693 -1814 318 169 0 15 chr1 126446607 126446672 -116217681 + L1MC4 LINE L1 6640 6703 -1339 343 236 12 18 chr1 126446672 126446837 -116217516 + (TA)n Simple_repeat Simple_repeat 2 165 0 234 245 0 0 chr1 126446903 126446956 -116217397 + HAL1 LINE L1 779 831 -1676 * 5190 150 35 6 chr1 126446953 126448030 -116216323 + L1P4 LINE L1 4382 5490 -684 940 236 16 99 chr1 126448040 126448404 -116215949 - MER72 LTR ERV1 -382 340 7 1984 118 10 56 chr1 126448653 126449275 -116215078 + LTR8 LTR ERV1 1 691 0 2276 161 54 12 chr1 126449315 126449724 -116214629 + MSTB LTR MaLR 1 426 0 27 0 0 0 chr1 126449826 126449853 -116214500 + AT_rich Low_complexity Low_complexity 1 27 0 643 240 0 0 chr1 126449853 126449978 -116214375 - FLAM_C SINE Alu -13 130 6 2760 226 89 56 chr1 126450131 126452516 -116211837 + L1MCb LINE L1 16 2567 -3997 21 0 0 0 chr1 126452538 126452559 -116211794 + AT_rich Low_complexity Low_complexity 1 21 0 1957 115 23 10 chr1 126452671 126452975 -116211378 + AluSx SINE Alu 4 311 -1 276 303 0 0 chr1 126453077 126453143 -116211210 + L1MC/D LINE L1 5527 5592 -650 * 349 182 0 26 chr1 126453142 126453219 -116211134 - L1MC3 LINE L1 -834 6951 6877 1870 157 23 0 chr1 126453221 126453527 -116210826 - AluSq SINE Alu 0 313 1 446 0 19 0 chr1 126453669 126453730 -116210623 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 446 0 19 0 chr1 126453730 126453784 -116210569 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 880 296 162 65 chr1 126453943 126454648 -116209705 - L2 LINE L2 -384 2930 2158 1200 221 20 4 chr1 126455929 126456182 -116208171 - AluJo SINE Alu -13 299 43 235 331 23 6 chr1 126456253 126456425 -116207928 - L1ME3A LINE L1 -236 5934 5760 768 286 64 15 chr1 126456629 126456972 -116207381 + L1MC/D LINE L1 4735 5094 -1052 258 289 12 0 chr1 126457200 126457283 -116207070 + L1MC/D LINE L1 5383 5466 -776 288 0 0 0 chr1 126457584 126457616 -116206737 + (TA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr1 126458028 126458056 -116206297 + AT_rich Low_complexity Low_complexity 1 28 0 1302 235 136 27 chr1 126458520 126458933 -116205420 - MER31B LTR ERV1 -8 458 1 21 0 0 0 chr1 126459691 126459712 -116204641 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 126460119 126460145 -116204208 + AT_rich Low_complexity Low_complexity 1 26 0 5233 196 69 87 chr1 126460556 126461969 -116202384 + MER52A LTR ERV1 1 1470 -285 1695 220 0 12 chr1 126461963 126462300 -116202053 + MER52A LTR ERV1 1423 1755 0 * 30 0 0 0 chr1 126462661 126462691 -116201662 + AT_rich Low_complexity Low_complexity 1 30 0 357 24 0 0 chr1 126463552 126463594 -116200759 + (CA)n Simple_repeat Simple_repeat 2 43 0 431 128 77 0 chr1 126464160 126464238 -116200115 + L1MA3 LINE L1 6213 6296 -9 943 309 56 26 chr1 126464346 126464918 -116199435 + L1ME3A LINE L1 5296 5884 -286 1438 247 51 67 chr1 126465651 126466177 -116198176 - LTR40a LTR ERVL 0 519 2 27 0 0 0 chr1 126466999 126467026 -116197327 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr1 126467840 126467868 -116196485 + AT_rich Low_complexity Low_complexity 1 28 0 490 289 82 64 chr1 126467959 126468319 -116196034 - L1M4 LINE L1 -1299 4847 4476 1764 57 0 35 chr1 126468319 126468549 -116195804 - AluY SINE Alu -10 301 80 490 289 82 64 chr1 126468549 126468642 -116195711 - L1M4 LINE L1 -1670 4476 4386 254 241 35 0 chr1 126468882 126468969 -116195384 + T-rich Low_complexity Low_complexity 3 92 0 282 206 0 0 chr1 126469387 126469455 -116194898 + (TA)n Simple_repeat Simple_repeat 2 69 0 551 260 293 3 chr1 126470219 126470263 -116194090 - LTR68 LTR ERV1 -21 719 689 372 77 0 0 chr1 126470263 126470315 -116194038 + (TA)n Simple_repeat Simple_repeat 1 52 0 551 260 293 3 chr1 126470315 126470570 -116193783 - LTR68 LTR ERV1 -51 689 333 739 293 46 18 chr1 126470600 126470880 -116193473 - LTR68 LTR ERV1 -452 288 1 183 341 56 16 chr1 126471280 126471406 -116192947 + L2 LINE L2 3183 3313 0 1979 207 58 12 chr1 126473148 126473996 -116190357 - L1M4 LINE L1 -408 5770 4880 7286 168 30 10 chr1 126473996 126475348 -116189005 - Tigger2 DNA MER2_type -1302 1416 38 1117 139 26 5 chr1 126475367 126475561 -116188792 - Tigger2 DNA MER2_type -792 1926 1729 203 320 0 0 chr1 126475768 126475818 -116188535 + (TG)n Simple_repeat Simple_repeat 2 51 0 1139 303 59 53 chr1 126475820 126476893 -116187460 - L1M4c LINE L1 -4607 1777 699 367 363 111 20 chr1 126477096 126477539 -116186814 - HAL1b LINE L1 -531 817 335 51 51 0 0 chr1 126477541 126477620 -116186733 + AT_rich Low_complexity Low_complexity 1 79 0 562 278 24 0 chr1 126477775 126477901 -116186452 + MLT1E LTR MaLR 26 154 -439 187 91 23 23 chr1 126477906 126477950 -116186403 + (TTATA)n Simple_repeat Simple_repeat 4 47 0 1017 244 62 12 chr1 126478039 126478281 -116186072 + MLT1E LTR MaLR 334 587 -6 23 0 0 0 chr1 126478388 126478411 -116185942 + AT_rich Low_complexity Low_complexity 1 23 0 734 261 89 0 chr1 126479434 126479637 -116184716 - MLT1D LTR MaLR -24 481 261 23 0 0 0 chr1 126480701 126480724 -116183629 + AT_rich Low_complexity Low_complexity 1 23 0 4017 193 20 45 chr1 126480931 126481187 -116183166 + L1M1 LINE L1 4309 4570 -1652 2044 135 0 3 chr1 126481187 126481484 -116182869 + AluSq SINE Alu 1 296 -17 4017 193 20 45 chr1 126481484 126482429 -116181924 + L1M1 LINE L1 4570 5479 -743 501 210 8 0 chr1 126482429 126482545 -116181808 + L1MA4 LINE L1 6176 6295 -5 1940 138 54 34 chr1 126482757 126483111 -116181242 - THE1B LTR MaLR 0 364 4 27 49 0 0 chr1 126483462 126483503 -116180850 + AT_rich Low_complexity Low_complexity 1 41 0 1981 117 0 7 chr1 126484438 126484764 -116179589 - AluSg SINE Alu 0 324 1 396 366 94 0 chr1 126485836 126486049 -116178304 + LTR16A LTR ERVL 76 308 -142 923 298 67 62 chr1 126486169 126486868 -116177485 + MERVL LTR ERVL 1712 2414 -2582 425 253 165 6 chr1 126486843 126487001 -116177352 + MERVL LTR ERVL 2264 2446 -2550 * 2039 121 16 0 chr1 126487313 126487620 -116176733 + AluSp SINE Alu 1 312 -1 22 80 0 0 chr1 126488446 126488496 -116175857 + AT_rich Low_complexity Low_complexity 1 50 0 1766 136 7 3 chr1 126488773 126489094 -116175259 - AluSg SINE Alu 0 344 23 2234 116 0 3 chr1 126489557 126489902 -116174451 - AluSg SINE Alu 0 344 1 24 77 0 0 chr1 126490221 126490273 -116174080 + AT_rich Low_complexity Low_complexity 1 52 0 1981 122 24 0 chr1 126490575 126490869 -116173484 - AluSq SINE Alu -12 301 1 236 129 48 16 chr1 126491079 126491141 -116173212 + (TA)n Simple_repeat Simple_repeat 1 64 0 180 0 0 0 chr1 126491238 126491258 -116173095 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 453 202 109 22 chr1 126492663 126492832 -116171521 + L1M4 LINE L1 3773 3953 -2193 222 352 0 23 chr1 126493265 126493353 -116171000 + L2 LINE L2 3218 3303 -10 21 57 0 0 chr1 126493371 126493406 -116170947 + AT_rich Low_complexity Low_complexity 1 35 0 1057 287 163 24 chr1 126493587 126494096 -116170257 + MLT1E LTR MaLR 1 580 -13 246 259 0 0 chr1 126494581 126494668 -116169685 + (TA)n Simple_repeat Simple_repeat 1 87 0 33 25 0 0 chr1 126495456 126495496 -116168857 + AT_rich Low_complexity Low_complexity 1 40 0 29 28 0 0 chr1 126495618 126495654 -116168699 + AT_rich Low_complexity Low_complexity 1 36 0 28 79 0 0 chr1 126495994 126496057 -116168296 + AT_rich Low_complexity Low_complexity 1 63 0 184 299 91 0 chr1 126496380 126496457 -116167896 + MIR SINE MIR 178 261 -1 181 419 12 6 chr1 126496495 126496655 -116167698 - L2 LINE L2 -32 3281 3121 1084 260 19 29 chr1 126496875 126497190 -116167163 - MER74A LTR ERVL -246 312 1 329 281 30 35 chr1 126497230 126497433 -116166920 + L1MCa LINE L1 1123 1324 -5102 885 227 75 53 chr1 126497887 126498303 -116166050 + L1MCa LINE L1 1310 1775 -4653 216 0 0 0 chr1 126498303 126498327 -116166026 + (A)n Simple_repeat Simple_repeat 1 24 0 1516 123 21 4 chr1 126498335 126498594 -116165759 + L1PA10 LINE L1 5909 6171 0 1563 252 130 34 chr1 126498617 126499165 -116165188 + L1MCa LINE L1 1942 2436 -3990 1505 203 7 7 chr1 126499165 126499451 -116164902 + AluJo SINE Alu 7 292 -20 1563 252 130 34 chr1 126499451 126500416 -116163937 + L1MCa LINE L1 2436 4257 -2169 280 35 104 61 chr1 126500424 126500539 -116163814 + (AATTG)n Simple_repeat Simple_repeat 5 124 0 806 123 8 0 chr1 126500544 126500666 -116163687 + L1P LINE L1 3965 4087 -2059 289 323 43 18 chr1 126500666 126500892 -116163461 + MLT1E1 LTR MaLR 33 400 -254 287 123 68 68 chr1 126500905 126500978 -116163375 - MLT1E3 LTR MaLR -182 442 370 195 42 0 0 chr1 126500981 126501005 -116163348 + (GGGAA)n Simple_repeat Simple_repeat 2 25 0 1237 71 0 22 chr1 126501050 126501105 -116163248 + (GAAA)n Simple_repeat Simple_repeat 1 233 0 1237 71 0 22 chr1 126501105 126501289 -116163064 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 796 272 60 0 chr1 126501419 126501655 -116162698 + MLT1E1 LTR MaLR 390 535 -7 24 0 0 0 chr1 126501672 126501696 -116162657 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr1 126501730 126501765 -116162588 + AT_rich Low_complexity Low_complexity 1 35 0 671 284 41 98 chr1 126501855 126502668 -116161685 + L2 LINE L2 1429 3313 0 1815 158 0 3 chr1 126503575 126503879 -116160474 - AluSx SINE Alu 0 303 1 183 129 0 0 chr1 126505289 126505320 -116159033 + (CA)n Simple_repeat Simple_repeat 2 32 0 3743 228 56 8 chr1 126506002 126506344 -116158009 - L1MB1 LINE L1 -2 6166 5842 4978 163 11 7 chr1 126506344 126507228 -116157125 - L1MC1 LINE L1 -13 6320 5433 3743 228 56 8 chr1 126507228 126508525 -116155828 - L1MB1 LINE L1 -326 5842 4450 509 340 74 37 chr1 126508525 126508851 -116155502 - LTR33 LTR ERVL -182 339 2 349 244 24 0 chr1 126509017 126509099 -116155254 + ORSL DNA AcHobo 191 274 -1 1087 308 48 32 chr1 126509492 126509866 -116154487 + MLT1E LTR MaLR 51 430 -163 513 111 0 44 chr1 126509888 126509978 -116154375 + L1MA3 LINE L1 6220 6305 0 187 30 30 30 chr1 126509982 126510015 -116154338 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1836 90 67 0 chr1 126510023 126510291 -116154062 - AluSp SINE Alu -27 286 1 720 246 18 12 chr1 126510309 126510480 -116153873 + MLT1E LTR MaLR 483 654 0 23 0 0 0 chr1 126510725 126510748 -116153605 + AT_rich Low_complexity Low_complexity 1 23 0 229 286 10 0 chr1 126510928 126511026 -116153327 + L1MEc LINE L1 1413 1511 -4885 1893 215 104 8 chr1 126511147 126511547 -116152806 + MER44D DNA MER2_type 1 515 -1972 180 111 0 0 chr1 126511547 126511574 -116152779 + (TATG)n Simple_repeat Simple_repeat 3 29 0 1893 215 104 8 chr1 126511574 126511675 -116152678 + MER44D DNA MER2_type 515 605 0 28 29 0 0 chr1 126511907 126511942 -116152411 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr1 126512111 126512153 -116152200 + AT_rich Low_complexity Low_complexity 1 42 0 24 91 0 0 chr1 126512497 126512563 -116151790 + AT_rich Low_complexity Low_complexity 1 66 0 23 68 0 0 chr1 126512661 126512705 -116151648 + AT_rich Low_complexity Low_complexity 1 44 0 2165 114 7 3 chr1 126512766 126513065 -116151288 - AluSx SINE Alu -12 300 1 28 29 0 0 chr1 126514550 126514585 -116149768 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 126515448 126515484 -116148869 + AT_rich Low_complexity Low_complexity 1 36 0 208 156 0 78 chr1 126515938 126516002 -116148351 + (TTTAA)n Simple_repeat Simple_repeat 5 63 0 237 233 0 17 chr1 126516014 126516074 -116148279 + CT-rich Low_complexity Low_complexity 3 61 0 1606 120 117 4 chr1 126516694 126516968 -116147385 - AluSg SINE Alu -5 305 1 23 0 0 0 chr1 126517269 126517292 -116147061 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 126517450 126517478 -116146875 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 126517792 126517822 -116146531 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr1 126518029 126518060 -116146293 + AT_rich Low_complexity Low_complexity 1 31 0 3622 174 48 26 chr1 126518865 126518927 -116145426 - THE1-int LTR MaLR -367 1213 1154 8330 66 6 2 chr1 126518927 126519994 -116144359 - MER11C LTR ERVK 0 1071 1 3622 174 48 26 chr1 126519994 126520633 -116143720 - THE1-int LTR MaLR -426 1154 496 2318 261 128 48 chr1 126520603 126520953 -116143400 - L1M4c LINE L1 -4825 1559 1239 * 2144 121 3 13 chr1 126520953 126521260 -116143093 - AluSg SINE Alu -6 304 1 2318 261 128 48 chr1 126521260 126522350 -116142003 - L1M4c LINE L1 -5145 1239 3 21 57 0 0 chr1 126522633 126522668 -116141685 + AT_rich Low_complexity Low_complexity 1 35 0 321 26 0 0 chr1 126523029 126523067 -116141286 + (TG)n Simple_repeat Simple_repeat 2 39 0 1381 198 74 0 chr1 126523407 126523731 -116140622 + MER7A DNA MER2_type 1 346 0 188 88 59 0 chr1 126523731 126523765 -116140588 + (TATG)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr1 126525787 126525809 -116138544 + AT_rich Low_complexity Low_complexity 1 22 0 654 232 55 12 chr1 126525855 126526019 -116138334 - L1MB7 LINE L1 -149 6035 5865 22 0 0 0 chr1 126526039 126526061 -116138292 + AT_rich Low_complexity Low_complexity 1 22 0 41839 41 23 3 chr1 126526479 126532511 -116131842 + L1PA3 LINE L1 1 6155 0 25 51 0 0 chr1 126532784 126532823 -116131530 + AT_rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr1 126532865 126532899 -116131454 + AT_rich Low_complexity Low_complexity 1 34 0 1158 235 77 37 chr1 126532965 126533344 -116131009 - MSTD LTR MaLR 0 396 3 292 195 39 52 chr1 126533390 126533455 -116130898 + MER101B LTR ERV1 3 66 -504 4405 196 95 126 chr1 126533455 126535264 -116129089 - MER52A LTR ERV1 0 1755 2 744 220 53 0 chr1 126535279 126535429 -116128924 + MER101B LTR ERV1 71 228 -342 2289 109 0 0 chr1 126536273 126536584 -116127769 - AluY SINE Alu 0 311 1 599 205 16 8 chr1 126536960 126537087 -116127266 + LTR49 LTR ERV1 468 595 0 1831 203 26 38 chr1 126537089 126537941 -116126412 + LTR49-int LTR ERV1 1 1499 -4447 1241 161 55 0 chr1 126537964 126538182 -116126171 + MSTB LTR MaLR 197 426 0 2077 211 64 16 chr1 126538262 126538778 -116125575 + LTR49-int LTR ERV1 842 1382 -4949 751 171 120 6 chr1 126538901 126539059 -116125294 + LTR49-int LTR ERV1 1371 1546 -4785 237 208 0 111 chr1 126539145 126539217 -116125136 + MER101B LTR ERV1 154 217 -353 2324 234 96 11 chr1 126539877 126540493 -116123860 - MER76 LTR ERV 0 688 21 2540 82 3 28 chr1 126540536 126540900 -116123453 + L1P4 LINE L1 5438 5792 -369 2261 75 0 33 chr1 126541731 126542038 -116122315 + AluY SINE Alu 1 297 -14 198 311 0 0 chr1 126542438 126542499 -116121854 - MIR SINE MIR -91 171 111 24 53 0 0 chr1 126543116 126543154 -116121199 + AT_rich Low_complexity Low_complexity 1 38 0 895 129 58 0 chr1 126543563 126543734 -116120619 - L1MA7 LINE L1 -1 6290 6110 659 180 15 126 chr1 126543736 126543888 -116120465 + L1MA7 LINE L1 5914 6081 -210 207 0 0 0 chr1 126543888 126543911 -116120442 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1573 168 7 28 chr1 126543920 126544205 -116120148 - AluJo SINE Alu -33 279 1 659 180 15 126 chr1 126544205 126544248 -116120105 + L1MA7 LINE L1 6050 6096 -195 2233 227 73 46 chr1 126544279 126544949 -116119404 + MER76 LTR ERV 1 688 0 21 0 0 0 chr1 126545187 126545208 -116119145 + AT_rich Low_complexity Low_complexity 1 21 0 212 143 26 52 chr1 126545730 126545807 -116118546 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 25 0 0 0 chr1 126546310 126546335 -116118018 + AT_rich Low_complexity Low_complexity 1 25 0 9653 75 27 8 chr1 126546336 126548459 -116115894 - L1PA7 LINE L1 -6 6148 3990 * 14585 105 7 2 chr1 126548443 126550603 -116113750 - L1PA7 LINE L1 -2574 3572 1402 5202 88 16 0 chr1 126550613 126551273 -116113080 + L1P3 LINE L1 968 1643 -4818 219 36 0 0 chr1 126551273 126551301 -116113052 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5202 88 16 0 chr1 126551301 126551371 -116112982 + L1P3 LINE L1 1643 1710 -4751 21 0 0 0 chr1 126552080 126552101 -116112252 + AT_rich Low_complexity Low_complexity 1 21 0 1109 112 39 0 chr1 126552261 126552439 -116111914 + L1PA13 LINE L1 5979 6163 0 359 156 33 0 chr1 126552455 126552577 -116111776 + (TA)n Simple_repeat Simple_repeat 1 126 0 975 232 91 19 chr1 126552596 126552979 -116111374 + L1M4 LINE L1 1324 1710 -4832 370 213 49 89 chr1 126552988 126553155 -116111198 - L1M4b LINE L1 -5200 1659 1502 1538 196 33 7 chr1 126553155 126553456 -116110897 - AluSx SINE Alu -3 309 1 370 213 49 89 chr1 126553456 126553513 -116110840 - L1M4b LINE L1 -5357 1502 1444 24 0 0 0 chr1 126554550 126554574 -116109779 + AT_rich Low_complexity Low_complexity 1 24 0 508 304 108 35 chr1 126554656 126555081 -116109272 - L1ME4a LINE L1 -157 5964 5509 2314 236 12 32 chr1 126555299 126555896 -116108457 + LTR10A-int LTR ERV1 6065 6649 0 2672 159 22 22 chr1 126555982 126556492 -116107861 + LTR10A LTR ERV1 1 510 -99 43 76 0 0 chr1 126557165 126557257 -116107096 + AT_rich Low_complexity Low_complexity 1 92 0 23 33 0 0 chr1 126558205 126558235 -116106118 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 126558965 126558986 -116105367 + AT_rich Low_complexity Low_complexity 1 21 0 435 71 0 0 chr1 126559351 126559407 -116104946 + Alu SINE Alu 233 288 -22 1643 175 23 9 chr1 126559407 126559755 -116104598 + L1MB2 LINE L1 5814 6166 -5 367 260 27 20 chr1 126559756 126559902 -116104451 + L1ME3 LINE L1 4462 4608 -1538 380 71 143 0 chr1 126560131 126560201 -116104152 + MADE1 DNA Mariner 1 80 0 385 285 99 33 chr1 126560532 126560774 -116103579 + L1ME3 LINE L1 5254 5511 -651 939 194 143 11 chr1 126560774 126561094 -116103259 - MSTD LTR MaLR 0 396 1 290 284 11 0 chr1 126561096 126561191 -116103162 + L1ME3 LINE L1 5509 5604 -566 651 266 106 5 chr1 126561217 126561405 -116102948 + MER58A DNA MER1_type 1 207 -17 359 285 17 64 chr1 126561476 126561648 -116102705 + L1ME3 LINE L1 5675 5838 -324 439 171 91 0 chr1 126561653 126561741 -116102612 + MER34 LTR ERV1 445 540 -2 238 229 48 0 chr1 126561781 126561864 -116102489 + L1MC4 LINE L1 6615 6701 -1341 2393 138 6 3 chr1 126562388 126562751 -116101602 + THE1B LTR MaLR 1 364 0 2616 137 24 7 chr1 126562751 126563167 -116101186 + THE1B-int LTR MaLR 1 423 -1157 759 264 39 0 chr1 126763258 126763436 -115900917 + MIR SINE MIR 78 262 0 660 236 127 73 chr1 126764283 126764558 -115899795 + L2 LINE L2 3024 3313 0 403 315 63 0 chr1 126765634 126765777 -115898576 + MIR3 SINE MIR 30 181 -27 812 62 23 8 chr1 126766729 126766858 -115897495 + (TTTC)n Simple_repeat Simple_repeat 1 131 0 2229 81 0 10 chr1 126766864 126767161 -115897192 - AluY SINE Alu 0 311 18 2473 217 38 45 chr1 126769084 126769688 -115894665 - MER77 LTR ERV1 0 605 6 195 329 72 39 chr1 126769912 126770119 -115894234 + L2 LINE L2 2455 2668 -646 1242 128 153 3 chr1 126770339 126770621 -115893732 - Ricksha DNA DNA -8 2846 2523 1623 131 7 62 chr1 126770731 126770954 -115893399 - Ricksha DNA DNA -287 2959 2756 2564 47 0 0 chr1 126770954 126771252 -115893101 - AluY SINE Alu -13 298 1 1623 131 7 62 chr1 126771252 126771334 -115893019 - Ricksha DNA DNA -490 2756 2671 * 2278 123 22 0 chr1 126771331 126771698 -115892655 - Ricksha DNA DNA -641 613 239 562 154 0 0 chr1 126771712 126771803 -115892550 - Ricksha DNA DNA -1955 91 1 687 274 127 72 chr1 126771814 126772121 -115892232 + L2 LINE L2 2949 3272 0 437 322 117 0 chr1 126772296 126772476 -115891877 + MIR SINE MIR 41 241 -21 368 292 42 0 chr1 126772929 126773025 -115891328 + MIR SINE MIR 162 261 -1 256 299 54 27 chr1 126773024 126773171 -115891182 + L2 LINE L2 2712 2862 -452 * 1845 159 10 0 chr1 126774756 126775045 -115889308 - AluJb SINE Alu -16 296 5 241 274 57 57 chr1 126776045 126776220 -115888133 - HAL1 LINE L1 -3 2504 2330 300 275 42 56 chr1 126776395 126776537 -115887816 - HAL1b LINE L1 -458 890 751 360 290 84 73 chr1 126776593 126776948 -115887405 + L1MC5 LINE L1 4488 4846 -1300 2382 85 7 0 chr1 126776963 126777269 -115887084 + AluSx SINE Alu 1 308 -4 1059 216 4 0 chr1 126777290 126777526 -115886827 - L1M4 LINE L1 -3673 2473 2237 832 225 5 0 chr1 126777714 126777905 -115886448 + L1MC5 LINE L1 5627 5818 -1990 1353 255 60 7 chr1 126777960 126778450 -115885903 + L1ME1 LINE L1 5654 6333 -1 364 242 53 8 chr1 126778468 126778600 -115885753 + L1MC5 LINE L1 5825 5962 -1846 246 266 0 0 chr1 126778611 126778690 -115885663 + (TA)n Simple_repeat Simple_repeat 2 80 0 2824 219 39 71 chr1 126778943 126778980 -115885373 + L1MC5 LINE L1 6277 6314 -1647 1721 174 0 7 chr1 126778980 126779262 -115885091 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr1 126779265 126779288 -115885065 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2824 219 39 71 chr1 126779288 126780553 -115883800 + L1MC5 LINE L1 6316 7536 -425 490 253 56 10 chr1 126780571 126780769 -115883584 + L1MC5 LINE L1 7707 7913 -48 629 284 182 33 chr1 126781208 126782003 -115882350 - HAL1 LINE L1 -598 1909 996 2167 107 0 10 chr1 126782005 126782294 -115882059 + AluSx SINE Alu 1 286 -26 969 156 28 11 chr1 126782424 126782604 -115881749 + L1M3e LINE L1 1 183 -6847 * 1365 207 19 12 chr1 126782603 126782927 -115881426 - L1ME LINE L1 -584 5582 5257 530 264 50 25 chr1 126782955 126783114 -115881239 - MIR SINE MIR -79 183 21 850 212 57 5 chr1 126783118 126783311 -115881042 - MER58B DNA MER1_type 0 341 139 185 65 32 0 chr1 126783522 126783553 -115880800 + (AATTG)n Simple_repeat Simple_repeat 2 33 0 358 309 56 74 chr1 126783792 126783954 -115880399 - L2 LINE L2 -22 3250 3092 195 42 0 0 chr1 126787023 126787047 -115877306 + (GGGAA)n Simple_repeat Simple_repeat 5 28 0 555 267 109 0 chr1 126790243 126790408 -115873945 + MIR SINE MIR 59 241 -21 795 245 53 0 chr1 126790928 126791136 -115873217 + MIR SINE MIR 28 246 -16 482 229 86 20 chr1 126791743 126791988 -115872365 - L1MC5 LINE L1 -65 7896 7636 2299 76 0 16 chr1 126792084 126792388 -115871965 + AluSx SINE Alu 1 299 -13 591 254 105 26 chr1 126792910 126793138 -115871215 - MIR SINE MIR -3 259 14 180 335 36 86 chr1 126793185 126793463 -115870890 - L2 LINE L2 -182 3090 2827 21 0 0 0 chr1 126793511 126793532 -115870821 + AT_rich Low_complexity Low_complexity 1 21 0 189 315 205 16 chr1 126795258 126795385 -115868968 + L2 LINE L2 3099 3249 -23 216 235 0 88 chr1 126795476 126795544 -115868809 + MIR SINE MIR 120 181 -81 24 0 0 0 chr1 126795616 126795640 -115868713 + AT_rich Low_complexity Low_complexity 1 24 0 683 243 34 63 chr1 126795684 126795890 -115868463 + MIR SINE MIR 63 262 0 372 22 0 0 chr1 126795975 126796020 -115868333 + (TG)n Simple_repeat Simple_repeat 2 46 0 808 346 4 4 chr1 126796046 126796289 -115868064 - MIR SINE MIR -19 243 1 1863 125 131 18 chr1 126796421 126796758 -115867595 + THE1C LTR MaLR 1 375 0 183 42 0 0 chr1 126796922 126796946 -115867407 + (TATATG)n Simple_repeat Simple_repeat 2 25 0 71 67 0 0 chr1 126797067 126797201 -115867152 + AT_rich Low_complexity Low_complexity 1 134 0 303 246 54 0 chr1 126797260 126797390 -115866963 - Charlie7 DNA MER1_type -286 2326 2190 824 106 7 0 chr1 126797399 126797540 -115866813 + L1MA7 LINE L1 6150 6291 0 2152 167 36 18 chr1 126797544 126797987 -115866366 + L1MB7 LINE L1 5725 6175 -9 4071 148 27 9 chr1 126798025 126798719 -115865634 - MER39 LTR ERV1 0 707 1 23 54 0 0 chr1 126798743 126798780 -115865573 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr1 126799033 126799077 -115865276 + AT_rich Low_complexity Low_complexity 1 44 0 2988 229 133 29 chr1 126799335 126800655 -115863698 - Charlie7 DNA MER1_type -440 2172 715 2156 230 14 33 chr1 126800660 126801235 -115863118 - L1ME1 LINE L1 -5 6161 5598 520 163 74 53 chr1 126801235 126801425 -115862928 - L1ME1 LINE L1 -179 5987 5794 1212 272 47 56 chr1 126801425 126801840 -115862513 - L1MCa LINE L1 -4596 2526 2109 183 42 0 0 chr1 126801840 126801864 -115862489 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1212 272 47 56 chr1 126801864 126802228 -115862125 - L1MCa LINE L1 -5013 2109 1561 2175 124 13 0 chr1 126802241 126802548 -115861805 - AluSq SINE Alu -2 311 1 983 187 0 6 chr1 126802692 126802858 -115861495 - AluJo SINE Alu -147 165 1 426 20 0 0 chr1 126803183 126803234 -115861119 + (TG)n Simple_repeat Simple_repeat 1 51 0 1824 259 85 50 chr1 126803235 126804073 -115860280 - L1MCa LINE L1 -5093 1330 464 6020 135 41 21 chr1 126804099 126805067 -115859286 - L1MA4 LINE L1 -7 6293 5346 198 0 0 0 chr1 126805067 126805089 -115859264 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 6020 135 41 21 chr1 126805089 126805284 -115859069 - L1MA4 LINE L1 -954 5346 5156 1606 181 3 25 chr1 126805284 126805566 -115858787 + AluJo SINE Alu 1 276 -36 6020 135 41 21 chr1 126805566 126806495 -115857858 - L1MA4 LINE L1 -1144 5156 4166 252 298 73 105 chr1 126807278 126807469 -115856884 + MIR SINE MIR 8 192 -70 1051 203 179 27 chr1 126807522 126807818 -115856535 + MER58B DNA MER1_type 1 341 0 266 167 0 0 chr1 126807829 126807877 -115856476 - MLT2B1 LTR ERVL 0 515 468 2089 156 59 3 chr1 126807878 126808270 -115856083 - MSTA LTR MaLR -4 424 11 39 0 0 0 chr1 126808330 126808369 -115855984 + AT_rich Low_complexity Low_complexity 1 39 0 965 225 61 4 chr1 126808396 126808677 -115855676 - MLT2B1 LTR ERVL -68 447 98 272 285 109 35 chr1 126808923 126809179 -115855174 + ERVL LTR ERVL 4369 4643 -1121 704 301 46 0 chr1 126809189 126809405 -115854948 - MIR SINE MIR -30 232 7 2229 119 0 3 chr1 126809987 126810282 -115854071 + AluSg SINE Alu 1 294 -16 451 229 90 96 chr1 126810393 126810747 -115853606 + LTR67 LTR ERVL 204 555 -2 28 0 0 0 chr1 126810799 126810827 -115853526 + AT_rich Low_complexity Low_complexity 1 28 0 771 165 0 8 chr1 126810833 126810960 -115853393 - FLAM_C SINE Alu -7 126 1 497 264 188 20 chr1 126812950 126813147 -115851206 + MIR SINE MIR 28 257 -5 411 293 78 24 chr1 126813458 126813684 -115850669 + MIR SINE MIR 20 254 -8 2413 75 14 0 chr1 126813950 126814245 -115850108 + AluSp SINE Alu 1 299 -14 246 85 404 0 chr1 126814751 126814798 -115849555 + L1MCc LINE L1 1138 1203 -5220 497 265 148 9 chr1 126814848 126815071 -115849282 + MIR SINE MIR 8 261 -1 2250 119 0 0 chr1 126815205 126815500 -115848853 + AluSx SINE Alu 1 295 -17 226 229 0 115 chr1 126815646 126815708 -115848645 - L1MC/D LINE L1 -2289 5519 5470 1698 139 106 0 chr1 126815708 126815981 -115848372 + AluSx SINE Alu 1 302 -10 226 229 0 115 chr1 126815981 126816014 -115848339 - L1MC/D LINE L1 -2338 5470 5435 29 0 0 0 chr1 126816243 126816272 -115848081 + AT_rich Low_complexity Low_complexity 1 29 0 811 179 14 0 chr1 126816304 126816444 -115847909 - FLAM_C SINE Alu -1 142 1 1184 227 175 0 chr1 126816494 126816837 -115847516 + L1MCc LINE L1 1134 1536 -4887 2148 125 0 3 chr1 126816855 126817158 -115847195 + AluSq SINE Alu 1 302 -11 1847 149 7 0 chr1 126817900 126818188 -115846165 + AluJo SINE Alu 1 290 -22 218 297 144 34 chr1 126818695 126818813 -115845540 - MIR3 SINE MIR -48 160 30 1292 163 54 78 chr1 126819306 126819462 -115844891 + MER33 DNA MER1_type 1 159 -2426 2102 116 10 3 chr1 126819462 126819763 -115844590 - AluSq SINE Alu -10 303 1 1292 163 54 78 chr1 126819763 126819938 -115844415 + MER33 DNA MER1_type 159 324 0 1926 148 93 21 chr1 126820476 126820854 -115843499 + MSTA LTR MaLR 1 405 -23 1718 200 95 56 chr1 126821137 126821623 -115842730 + MLT1D LTR MaLR 1 505 0 261 267 0 13 chr1 126821778 126821853 -115842500 + CT-rich Low_complexity Low_complexity 1 74 0 463 300 217 27 chr1 126822020 126822450 -115841903 - L2 LINE L2 0 3313 2787 622 319 87 57 chr1 126822651 126823199 -115841154 - L2 LINE L2 -1 3271 2689 2448 88 0 0 chr1 126823199 126823507 -115840846 + AluY SINE Alu 1 308 -3 622 319 87 57 chr1 126823507 126823639 -115840714 - L2 LINE L2 -583 2689 2562 769 281 95 81 chr1 126824379 126824958 -115839395 - L2 LINE L2 -886 2428 1842 955 218 68 73 chr1 126825014 126825413 -115838940 + L1MEc LINE L1 619 1015 -5381 217 140 35 18 chr1 126828354 126828411 -115835942 + (TTA)n Simple_repeat Simple_repeat 3 60 0 1528 191 4 8 chr1 126828411 126828673 -115835680 - AluJb SINE Alu -39 273 13 372 302 69 0 chr1 126828822 126828938 -115835415 + L2 LINE L2 3186 3309 -4 473 267 70 6 chr1 126829095 126829267 -115835086 + L1PB1 LINE L1 12 194 -6669 15244 195 17 10 chr1 126829267 126832321 -115832032 + L1PB1 LINE L1 903 3932 -2935 1722 99 5 0 chr1 126832321 126832543 -115831810 + AluSp SINE Alu 77 299 -14 15244 195 17 10 chr1 126832543 126834413 -115829940 + L1PB1 LINE L1 3932 6104 -763 2234 62 0 31 chr1 126834413 126834704 -115829649 + AluY SINE Alu 30 311 0 15244 195 17 10 chr1 126834704 126835194 -115829159 + L1PB1 LINE L1 6104 6589 -278 469 269 41 67 chr1 126835300 126835568 -115828785 - L1MEc LINE L1 -5517 879 619 758 283 95 81 chr1 126835624 126836203 -115828150 + L2 LINE L2 1842 2428 -886 628 319 87 56 chr1 126836944 126837076 -115827277 + L2 LINE L2 2562 2688 -584 2430 88 0 0 chr1 126837076 126837382 -115826971 - AluY SINE Alu -5 306 1 628 319 87 56 chr1 126837382 126837929 -115826424 + L2 LINE L2 2688 3271 -1 452 305 214 19 chr1 126838130 126838559 -115825794 + L2 LINE L2 2787 3313 0 261 267 0 13 chr1 126838726 126838801 -115825552 + GA-rich Low_complexity Low_complexity 1 74 0 1718 200 95 56 chr1 126838956 126839442 -115824911 - MLT1D LTR MaLR 0 505 1 1926 148 93 21 chr1 126839726 126840104 -115824249 - MSTA LTR MaLR -23 405 1 1292 163 54 78 chr1 126840642 126840817 -115823536 - MER33 DNA MER1_type -2261 324 159 2102 116 10 3 chr1 126840817 126841118 -115823235 + AluSq SINE Alu 1 303 -10 1292 163 54 78 chr1 126841118 126841274 -115823079 - MER33 DNA MER1_type -2426 159 1 218 297 144 34 chr1 126841767 126841885 -115822468 + MIR3 SINE MIR 30 160 -48 1847 149 7 0 chr1 126842393 126842681 -115821672 - AluJo SINE Alu -22 290 1 2148 125 0 3 chr1 126843423 126843726 -115820627 - AluSq SINE Alu -11 302 1 1184 227 175 0 chr1 126843744 126844087 -115820266 - L1MCc LINE L1 -4887 1536 1134 811 179 14 0 chr1 126844137 126844277 -115820076 + FLAM_C SINE Alu 1 142 -1 29 0 0 0 chr1 126844309 126844338 -115820015 + AT_rich Low_complexity Low_complexity 1 29 0 226 229 0 115 chr1 126844567 126844600 -115819753 + L1MC/D LINE L1 5435 5470 -2338 1820 114 107 0 chr1 126844600 126844872 -115819481 - AluSx SINE Alu -11 301 1 226 229 0 115 chr1 126844872 126844934 -115819419 + L1MC/D LINE L1 5470 5519 -2289 2263 112 0 0 chr1 126845080 126845375 -115818978 - AluSx SINE Alu -17 295 1 244 286 0 29 chr1 126845469 126845539 -115818814 + LTR33A LTR ERVL 454 521 -2 359 204 0 139 chr1 126845866 126845974 -115818379 + MIR3 SINE MIR 87 179 -29 294 277 0 60 chr1 126846410 126846493 -115817860 - MIR SINE MIR -75 133 56 339 322 89 64 chr1 126846589 126846723 -115817630 - MIR SINE MIR -19 243 99 1791 149 3 41 chr1 126846723 126847039 -115817314 - AluJb SINE Alu -8 304 1 339 322 89 64 chr1 126847039 126847140 -115817213 - MIR SINE MIR -163 99 2 4338 158 31 128 chr1 126847309 126848680 -115815673 - L1MCc LINE L1 -1984 5224 3986 2458 74 0 0 chr1 126848796 126849095 -115815258 - AluY SINE Alu -12 299 1 2526 66 0 0 chr1 126849435 126849736 -115814617 + AluY SINE Alu 1 301 -10 3292 225 54 5 chr1 126850980 126851992 -115812361 - L1MCc LINE L1 -3193 4015 2954 3595 242 33 11 chr1 126852000 126852986 -115811367 - L1MCc LINE L1 -4960 2249 1233 1210 270 52 13 chr1 126853017 126853402 -115810951 - L1MCc LINE L1 -6005 685 286 1763 229 84 67 chr1 126853406 126854112 -115810241 - Charlie7 DNA MER1_type -1882 730 13 217 358 75 17 chr1 126854858 126854978 -115809375 - L2 LINE L2 -12 3260 3134 208 304 36 0 chr1 126855326 126855382 -115808971 - L2 LINE L2 -682 2632 2575 387 333 67 11 chr1 126855514 126855694 -115808659 - L2 LINE L2 -944 2370 2181 1000 165 24 12 chr1 126855948 126856112 -115808241 + FRAM SINE Alu 1 166 0 295 304 151 57 chr1 126856425 126856797 -115807556 - L2 LINE L2 -2582 732 326 2004 152 3 3 chr1 126857397 126857775 -115806578 + AluSx SINE Alu 1 378 0 842 294 58 54 chr1 126858295 126859021 -115805332 - L2 LINE L2 0 3313 2590 7073 195 70 78 chr1 126859090 126860601 -115803752 - L1MC4a LINE L1 0 7808 6316 1544 197 53 58 chr1 126860601 126860997 -115803356 + MLT2C1 LTR ERVL 1 394 -3 7073 195 70 78 chr1 126860997 126861603 -115802750 - L1MC4a LINE L1 -1492 6316 5707 450 299 48 35 chr1 126861864 126861927 -115802426 + Charlie7 DNA MER1_type 17 78 -2534 1902 119 69 0 chr1 126861927 126862204 -115802149 + AluSq SINE Alu 1 296 -17 450 299 48 35 chr1 126862204 126862408 -115801945 + Charlie7 DNA MER1_type 78 317 -2295 * 2523 251 112 42 chr1 126862407 126863294 -115801059 + Charlie7 DNA MER1_type 1425 2406 -206 1793 161 13 10 chr1 126863294 126863592 -115800761 + AluSx SINE Alu 5 303 -9 2523 251 112 42 chr1 126863592 126863813 -115800540 + Charlie7 DNA MER1_type 2406 2610 -2 22 0 0 0 chr1 126863938 126863960 -115800393 + AT_rich Low_complexity Low_complexity 1 22 0 568 185 116 20 chr1 126864020 126864166 -115800187 - L1MC4 LINE L1 -124 7918 7759 2303 107 0 3 chr1 126864300 126864608 -115799745 + AluSg SINE Alu 1 307 -3 219 266 0 0 chr1 126864818 126864882 -115799471 + (TA)n Simple_repeat Simple_repeat 2 65 0 479 286 48 10 chr1 126866200 126866406 -115797947 + LTR33 LTR ERVL 308 521 0 940 187 32 36 chr1 126866813 126866888 -115797465 + MER20 DNA MER1_type 2 76 -143 4017 123 11 13 chr1 126866888 126867023 -115797330 - MER41B LTR ERV1 0 635 501 2302 102 0 0 chr1 126867023 126867317 -115797036 + AluSx SINE Alu 1 294 -18 4017 123 11 13 chr1 126867317 126867817 -115796536 - MER41B LTR ERV1 -134 501 1 940 187 32 36 chr1 126867817 126867960 -115796393 + MER20 DNA MER1_type 76 219 0 401 252 157 17 chr1 126868001 126868116 -115796237 + MIR SINE MIR 4 134 -128 32 0 0 0 chr1 126868457 126868489 -115795864 + AT_rich Low_complexity Low_complexity 1 32 0 1044 126 93 0 chr1 126868489 126868704 -115795649 - L1MA7 LINE L1 -6 6285 6051 508 203 98 8 chr1 126868743 126868866 -115795487 + MIR SINE MIR 117 250 -12 254 197 84 113 chr1 126868947 126869022 -115795331 + L1ME3A LINE L1 6026 6098 -72 1629 177 11 7 chr1 126869022 126869332 -115795021 + AluJb SINE Alu 2 312 0 254 197 84 113 chr1 126869332 126869397 -115794956 + L1ME3A LINE L1 6098 6163 -7 316 359 84 37 chr1 126870271 126870544 -115793809 + L3 LINE CR1 79 364 -1213 1902 175 26 17 chr1 126870642 126870922 -115793431 + MER61C LTR ERV1 14 301 -133 2417 84 0 3 chr1 126870922 126871231 -115793122 - AluSq SINE Alu -5 308 1 1902 175 26 17 chr1 126871231 126871367 -115792986 + MER61C LTR ERV1 301 434 0 629 226 45 0 chr1 126871367 126871500 -115792853 - MIR SINE MIR -104 158 20 264 250 12 12 chr1 126871687 126871767 -115792586 + MER116 DNA Mariner 1 80 0 617 285 66 16 chr1 126871837 126872093 -115792260 + L3 LINE CR1 692 960 -617 295 250 107 0 chr1 126872238 126872322 -115792031 + L3 LINE CR1 1182 1274 -303 239 325 24 40 chr1 126872320 126872446 -115791907 - L2 LINE L2 -4 3268 3145 * 932 106 8 0 chr1 126872834 126872966 -115791387 - FLAM_C SINE Alu 0 133 1 393 153 0 0 chr1 126872988 126873060 -115791293 + (CA)n Simple_repeat Simple_repeat 1 72 0 2152 113 3 3 chr1 126873526 126873836 -115790517 + AluSg SINE Alu 1 310 0 1338 238 146 16 chr1 126875112 126875557 -115788796 + MLT1D LTR MaLR 1 503 -2 1315 205 80 28 chr1 126875632 126875959 -115788394 + MER2 DNA MER2_type 1 344 0 2308 103 0 0 chr1 126877462 126877764 -115786589 + AluSx SINE Alu 1 302 -10 2210 108 7 0 chr1 126878208 126878503 -115785850 - AluSx SINE Alu -15 297 1 2584 230 72 26 chr1 126878509 126879450 -115784903 - L1ME1 LINE L1 -5 6555 5551 2060 63 48 0 chr1 126879450 126879748 -115784605 + AluY SINE Alu 1 311 0 2584 230 72 26 chr1 126879748 126879953 -115784400 - L1ME1 LINE L1 -1009 5551 5357 843 259 80 12 chr1 126879965 126880301 -115784052 - L1ME1 LINE L1 -5157 1386 1028 381 307 88 33 chr1 126880437 126880652 -115783701 - L1ME1 LINE L1 -5573 957 731 448 324 0 11 chr1 126881014 126881196 -115783157 - L1ME1 LINE L1 -6342 198 19 2401 102 0 6 chr1 126881218 126881531 -115782822 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr1 126881689 126881715 -115782638 + AT_rich Low_complexity Low_complexity 1 26 0 383 298 71 12 chr1 126881759 126881927 -115782426 + MIR3 SINE MIR 17 194 -14 2300 95 7 0 chr1 126883085 126883379 -115780974 - AluSp SINE Alu -17 296 1 25 0 0 0 chr1 126883459 126883484 -115780869 + AT_rich Low_complexity Low_complexity 1 25 0 344 322 72 98 chr1 126883533 126883797 -115780556 + L2 LINE L2 2948 3204 -68 512 289 103 28 chr1 126884277 126884530 -115779823 + MLT1I LTR MaLR 19 290 -119 262 208 0 0 chr1 126884736 126884789 -115779564 + MLT1I LTR MaLR 357 409 0 618 329 41 14 chr1 126884790 126884906 -115779447 - MIR SINE MIR -30 232 121 1735 189 4 0 chr1 126884906 126885231 -115779122 + AluJb SINE Alu 1 326 0 618 329 41 14 chr1 126885231 126885332 -115779021 - MIR SINE MIR -141 121 8 621 288 62 42 chr1 126886139 126886587 -115777766 + LTR16B LTR ERVL 1 457 -7 292 217 33 98 chr1 126886595 126886705 -115777648 - L1M4 LINE L1 -321 5853 5737 6434 114 55 50 chr1 126886705 126886915 -115777438 + Tigger3b DNA MER2_type 2 209 -2819 1950 165 0 13 chr1 126886915 126887231 -115777122 + AluJb SINE Alu 1 312 0 6434 114 55 50 chr1 126887231 126887901 -115776452 + Tigger3b DNA MER2_type 209 892 -2136 215 61 30 0 chr1 126887901 126887934 -115776419 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 6434 114 55 50 chr1 126887934 126888276 -115776077 + Tigger3b DNA MER2_type 892 1231 0 292 217 33 98 chr1 126888276 126888349 -115776004 - L1M4 LINE L1 -437 5737 5682 371 183 53 8 chr1 126888362 126888493 -115775860 + (TA)n Simple_repeat Simple_repeat 1 137 0 237 169 22 11 chr1 126888509 126888598 -115775755 + (TA)n Simple_repeat Simple_repeat 1 90 0 2028 118 0 4 chr1 126888647 126888917 -115775436 - AluSg SINE Alu -41 269 1 638 291 88 22 chr1 126888930 126889815 -115774538 - L1M4 LINE L1 -596 5574 4644 393 332 84 26 chr1 126889941 126890167 -115774186 - MIR SINE MIR -6 256 18 396 196 98 86 chr1 126890769 126890911 -115773442 - MIR SINE MIR -63 145 56 1255 148 31 23 chr1 126891559 126891625 -115772728 - Tigger2 DNA MER2_type 0 2718 2654 2126 107 3 29 chr1 126891625 126891935 -115772418 - AluSx SINE Alu -10 302 1 1255 148 31 23 chr1 126891935 126892124 -115772229 - Tigger2 DNA MER2_type -64 2654 2461 3488 127 12 13 chr1 126892170 126892767 -115771586 - Tigger2 DNA MER2_type -1957 761 166 1632 117 5 0 chr1 126892767 126892989 -115771364 - AluY SINE Alu -6 305 83 2206 119 0 0 chr1 126893015 126893310 -115771043 + AluSx SINE Alu 14 308 -4 309 182 0 0 chr1 126893310 126893365 -115770988 + MER8 DNA MER2_type 185 239 0 698 271 131 22 chr1 126893392 126893882 -115770471 - L1ME4a LINE L1 -218 5903 5361 641 216 91 74 chr1 126894898 126895194 -115769159 - L1ME2 LINE L1 -69 6095 5795 * 4358 248 84 30 chr1 126895189 126895403 -115768950 - L1ME2 LINE L1 -1224 4922 4721 2199 107 3 7 chr1 126895403 126895701 -115768652 + AluSx SINE Alu 1 297 -15 4358 248 84 30 chr1 126895701 126897237 -115767116 - L1ME2 LINE L1 -1425 4721 3044 2269 87 3 32 chr1 126897237 126897549 -115766804 - AluSx SINE Alu -9 303 1 4358 248 84 30 chr1 126897549 126897839 -115766514 - L1ME2 LINE L1 -3102 3044 2771 185 268 0 0 chr1 126897986 126898027 -115766326 + L2 LINE L2 3215 3255 -17 498 285 179 6 chr1 126898497 126898676 -115765677 - MIR SINE MIR 0 262 53 296 214 92 69 chr1 126899008 126899139 -115765214 - MIR SINE MIR -1 261 128 1576 319 137 32 chr1 126899918 126900885 -115763468 + L3 LINE CR1 418 1485 -92 457 238 40 73 chr1 126902686 126902782 -115761571 - MIR SINE MIR 0 262 171 1478 190 20 40 chr1 126902782 126902916 -115761437 + AluJb SINE Alu 5 140 -172 2125 123 0 7 chr1 126902916 126903217 -115761136 + AluSq SINE Alu 1 299 -14 1478 190 20 40 chr1 126903217 126903382 -115760971 + AluJb SINE Alu 140 298 -14 457 238 40 73 chr1 126903382 126903436 -115760917 - MIR SINE MIR -91 171 117 25 0 0 0 chr1 126903618 126903643 -115760710 + AT_rich Low_complexity Low_complexity 1 25 0 232 271 57 0 chr1 126906509 126906579 -115757774 + MLT1L LTR MaLR 203 276 -339 239 250 83 30 chr1 126906722 126906854 -115757499 + MLT1K LTR MaLR 450 588 0 405 226 38 107 chr1 126907525 126907684 -115756669 + L2 LINE L2 3166 3313 0 1250 248 268 15 chr1 126908039 126908580 -115755773 + MER69 DNA AcHobo 1 678 -1848 1140 193 36 52 chr1 126908625 126908678 -115755675 + MER69 DNA AcHobo 1650 1702 -824 1668 170 66 0 chr1 126908678 126908949 -115755404 + AluJo SINE Alu 1 289 -23 1140 193 36 52 chr1 126908949 126908975 -115755378 + MER69 DNA AcHobo 1702 1727 -799 2085 94 54 0 chr1 126908975 126909251 -115755102 + AluSg SINE Alu 1 291 -19 1140 193 36 52 chr1 126909251 126909533 -115754820 + MER69 DNA AcHobo 1727 2006 -520 2348 96 3 0 chr1 126909987 126910288 -115754065 - AluSp SINE Alu -9 304 3 2377 84 7 7 chr1 126910554 126910862 -115753491 + AluY SINE Alu 2 309 -2 2163 82 61 3 chr1 126910986 126911279 -115753074 - AluSg SINE Alu 0 310 1 1532 208 49 42 chr1 126911597 126912146 -115752207 + MER69 DNA AcHobo 1956 2508 -18 1773 194 11 16 chr1 126912463 126912828 -115751525 - MLT1A1 LTR MaLR 0 365 3 309 305 141 16 chr1 126912898 126913026 -115751327 + MIR SINE MIR 47 190 -72 1464 225 124 81 chr1 126913302 126914083 -115750270 + L1ME3 LINE L1 5342 6156 -6 568 227 94 32 chr1 126914100 126914377 -115749976 + L1ME4a LINE L1 5610 5903 -218 704 205 8 0 chr1 126914604 126914731 -115749622 + FLAM_A SINE Alu 1 128 -5 2172 131 0 0 chr1 126914760 126915051 -115749302 + AluSx SINE Alu 1 291 -21 657 264 34 0 chr1 126915142 126915320 -115749033 + MIR SINE MIR 77 260 -2 231 303 0 15 chr1 126915841 126915907 -115748446 + CT-rich Low_complexity Low_complexity 3 67 0 257 303 222 39 chr1 126918953 126919106 -115745247 - MIR SINE MIR -61 147 10 220 171 0 0 chr1 126919123 126919158 -115745195 - MIR SINE MIR -70 192 158 2440 83 0 3 chr1 126919199 126919499 -115744854 - AluSc SINE Alu -10 299 1 2509 63 0 3 chr1 126920172 126920475 -115743878 - AluY SINE Alu -9 302 1 862 166 85 35 chr1 126920768 126920967 -115743386 - MER3 DNA MER1_type 0 209 1 2851 3 0 0 chr1 126921526 126921832 -115742521 - AluYa5 SINE Alu -5 306 1 2462 186 26 77 chr1 126923581 126923861 -115740492 + LTR8 LTR ERV1 16 309 -382 2582 122 33 26 chr1 126923861 126924286 -115740067 + MSTA LTR MaLR 1 428 0 2462 186 26 77 chr1 126924286 126924694 -115739659 + LTR8 LTR ERV1 309 669 -22 2048 173 3 0 chr1 126924764 126925110 -115739243 - MER7A DNA MER2_type -1 345 1 2362 85 0 0 chr1 126925236 126925529 -115738824 + AluSp SINE Alu 1 293 -20 2356 103 0 0 chr1 126925805 126926105 -115738248 + AluSg SINE Alu 1 300 -10 215 204 0 23 chr1 126926419 126926463 -115737890 + L2 LINE L2 3178 3220 -52 254 132 19 0 chr1 126926513 126926566 -115737787 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 299 277 82 0 chr1 126926573 126926720 -115737633 - MLT1H1 LTR MaLR -1 554 382 1284 136 75 0 chr1 126927024 126927137 -115737216 + MER30 DNA MER1_type 1 104 -126 2237 109 0 13 chr1 126927137 126927440 -115736913 + AluSc SINE Alu 1 299 -10 1284 136 75 0 chr1 126927440 126927540 -115736813 + MER30 DNA MER1_type 104 230 0 311 346 45 16 chr1 126927615 126927806 -115736547 + MIR SINE MIR 12 198 -10 2326 76 3 0 chr1 126928157 126928447 -115735906 - AluSp SINE Alu -22 291 1 371 194 0 139 chr1 126928939 126929047 -115735306 + MIR3 SINE MIR 87 179 -29 309 286 0 55 chr1 126929475 126929566 -115734787 - MIR SINE MIR -67 141 56 359 322 89 64 chr1 126929662 126929796 -115734557 - MIR SINE MIR -19 243 99 1842 155 3 31 chr1 126929796 126930113 -115734240 - AluJb SINE Alu -4 308 1 359 322 89 64 chr1 126930113 126930214 -115734139 - MIR SINE MIR -163 99 2 2072 144 23 0 chr1 126930456 126930755 -115733598 + AluSx SINE Alu 1 306 -6 1452 191 18 69 chr1 126931602 126931927 -115732426 + MLT1A2 LTR MaLR 1 304 -70 1605 113 0 0 chr1 126931927 126932139 -115732214 + AluSq SINE Alu 86 297 -16 1452 191 18 69 chr1 126932139 126932205 -115732148 + MLT1A2 LTR MaLR 304 372 -2 252 298 73 105 chr1 126932937 126933128 -115731225 + MIR SINE MIR 8 192 -70 1051 203 179 27 chr1 126933181 126933477 -115730876 + MER58B DNA MER1_type 1 341 0 1059 187 176 107 chr1 126933488 126933537 -115730816 - MLT2B2 LTR ERVL 0 515 471 2359 147 57 2 chr1 126933537 126933939 -115730414 - MSTA LTR MaLR -4 424 1 1059 187 176 107 chr1 126933939 126933968 -115730385 - MLT2B2 LTR ERVL -44 471 445 325 70 35 0 chr1 126933968 126934025 -115730328 + (TA)n Simple_repeat Simple_repeat 1 59 0 1059 187 176 107 chr1 126934025 126934336 -115730017 - MLT2B2 LTR ERVL -70 445 98 272 285 109 35 chr1 126934582 126934838 -115729515 + ERVL LTR ERVL 4369 4643 -1121 704 301 46 0 chr1 126934848 126935064 -115729289 - MIR SINE MIR -30 232 7 2229 119 0 3 chr1 126935646 126935941 -115728412 + AluSg SINE Alu 1 294 -16 451 229 90 96 chr1 126936052 126936406 -115727947 + LTR67 LTR ERVL 204 555 -2 28 0 0 0 chr1 126936458 126936486 -115727867 + AT_rich Low_complexity Low_complexity 1 28 0 771 165 0 8 chr1 126936492 126936619 -115727734 - FLAM_C SINE Alu -7 126 1 492 258 187 25 chr1 126938608 126938806 -115725547 + MIR SINE MIR 28 257 -5 411 293 78 24 chr1 126939117 126939343 -115725010 + MIR SINE MIR 20 254 -8 2413 75 14 0 chr1 126939609 126939904 -115724449 + AluSp SINE Alu 1 299 -14 497 265 148 9 chr1 126940507 126940730 -115723623 + MIR SINE MIR 8 261 -1 329 296 87 96 chr1 126940766 126940864 -115723489 - L1MC/D LINE L1 -627 5535 5438 2268 115 0 0 chr1 126940864 126941159 -115723194 + AluSx SINE Alu 1 295 -17 329 296 87 96 chr1 126941159 126941367 -115722986 - L1MC/D LINE L1 -724 5438 5458 1718 139 106 0 chr1 126941367 126941640 -115722713 + AluSx SINE Alu 1 302 -10 329 296 87 96 chr1 126941640 126941841 -115722512 - L1MC/D LINE L1 -703 5459 5258 29 0 0 0 chr1 126941902 126941931 -115722422 + AT_rich Low_complexity Low_complexity 1 29 0 818 179 14 0 chr1 126941963 126942103 -115722250 - FLAM_C SINE Alu -1 142 1 1026 227 175 0 chr1 126942153 126942496 -115721857 + L1MCc LINE L1 1134 1536 -4887 2152 125 0 3 chr1 126942514 126942817 -115721536 + AluSq SINE Alu 1 302 -11 1860 149 7 0 chr1 126943558 126943846 -115720507 + AluJo SINE Alu 1 290 -22 232 319 134 34 chr1 126944353 126944472 -115719881 - MIR3 SINE MIR -48 160 30 1132 163 54 78 chr1 126944964 126945120 -115719233 + MER33 DNA MER1_type 1 159 -2426 2101 116 10 3 chr1 126945120 126945421 -115718932 - AluSq SINE Alu -10 303 1 1132 163 54 78 chr1 126945421 126945596 -115718757 + MER33 DNA MER1_type 159 324 0 1762 151 93 21 chr1 126946134 126946512 -115717841 + MSTA LTR MaLR 1 405 -23 1519 198 99 60 chr1 126946795 126947281 -115717072 + MLT1D LTR MaLR 1 505 0 261 267 0 13 chr1 126947436 126947511 -115716842 + CT-rich Low_complexity Low_complexity 1 74 0 477 317 160 30 chr1 126947678 126948108 -115716245 - L2 LINE L2 0 3272 2787 577 316 111 60 chr1 126948309 126948857 -115715496 - L2 LINE L2 -1 3271 2689 2418 88 0 0 chr1 126948857 126949162 -115715191 + AluY SINE Alu 1 305 -6 577 316 111 60 chr1 126949162 126949297 -115715056 - L2 LINE L2 -583 2689 2562 782 281 95 81 chr1 126950038 126950617 -115713736 - L2 LINE L2 -886 2428 1842 787 221 68 73 chr1 126950673 126951072 -115713281 + L1MEc LINE L1 619 1015 -5381 217 140 35 18 chr1 126954013 126954070 -115710283 + (TTA)n Simple_repeat Simple_repeat 3 60 0 1551 202 4 7 chr1 126954070 126954342 -115710011 - AluJb SINE Alu -39 273 3 376 302 69 0 chr1 126954481 126954597 -115709756 + L2 LINE L2 3186 3309 -4 412 285 64 0 chr1 126954754 126954926 -115709427 + L1PB1 LINE L1 12 194 -6669 380 119 0 0 chr1 126954926 126954993 -115709360 + L1PB1 LINE L1 903 969 -5894 13746 191 14 10 chr1 126954997 126957296 -115707057 + L1PB1 LINE L1 1864 4151 -2716 1728 99 5 0 chr1 126957296 126957518 -115706835 + AluSp SINE Alu 77 299 -14 13746 191 14 10 chr1 126957518 126959388 -115704965 + L1PB1 LINE L1 4151 6101 -766 2221 62 0 31 chr1 126959388 126959679 -115704674 + AluY SINE Alu 30 311 0 13746 191 14 10 chr1 126959679 126960449 -115703904 + L1PB1 LINE L1 6101 6866 -1 26 0 0 0 chr1 126961740 126961766 -115702587 + AT_rich Low_complexity Low_complexity 1 26 0 433 317 199 20 chr1 126962124 126962465 -115701888 + L2 LINE L2 2358 2759 -555 28 0 0 0 chr1 126962703 126962731 -115701622 + AT_rich Low_complexity Low_complexity 1 28 0 1306 183 28 108 chr1 126962749 126963191 -115701162 - LTR37B LTR ERV1 0 468 67 2129 81 40 0 chr1 126963191 126963489 -115700864 + AluSx SINE Alu 1 309 0 1306 183 28 108 chr1 126963489 126963552 -115700801 - LTR37B LTR ERV1 -401 67 1 2189 103 0 0 chr1 126964006 126964372 -115699981 + AluSc SINE Alu 1 366 0 1200 224 62 42 chr1 126964451 126964809 -115699544 - MLT1A1 LTR MaLR 0 365 1 1647 128 113 16 chr1 126964809 126965128 -115699225 - MLT1A1-int LTR MaLR 0 1735 1386 257 154 185 31 chr1 126965191 126965256 -115699097 - MSTD LTR MaLR -321 75 1 1730 204 24 0 chr1 126965256 126965594 -115698759 + MLT1A1 LTR MaLR 20 365 0 754 282 117 51 chr1 126965598 126966022 -115698331 + L1ME3A LINE L1 2244 2639 -3507 1735 193 20 0 chr1 126966022 126966328 -115698025 + AluJb SINE Alu 1 312 0 754 282 117 51 chr1 126966328 126966608 -115697745 + L1ME3A LINE L1 2639 2899 -3247 2252 122 0 0 chr1 126966608 126966912 -115697441 - AluSx SINE Alu -8 304 1 754 282 117 51 chr1 126966912 126967793 -115696560 + L1ME3A LINE L1 2899 4018 -2128 261 107 26 20 chr1 126968034 126968089 -115696264 + L1MC/D LINE L1 5766 5819 -302 21 36 0 0 chr1 126968822 126968850 -115695503 + GC_rich Low_complexity Low_complexity 1 28 0 226 329 92 24 chr1 126969947 126970111 -115694242 - L2 LINE L2 -30 3283 3109 21 0 0 0 chr1 126971450 126971471 -115692882 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr1 126972309 126972352 -115692001 + AT_rich Low_complexity Low_complexity 1 43 0 533 261 133 39 chr1 126972466 126972971 -115691382 + L1ME3A LINE L1 5375 5956 -214 395 259 181 37 chr1 126974614 126974939 -115689414 - L1ME4a LINE L1 -25 6096 5725 595 228 85 45 chr1 126975337 126975583 -115688770 - MER113 DNA MER1_type? -58 463 208 198 209 0 0 chr1 126975765 126975808 -115688545 + (TG)n Simple_repeat Simple_repeat 2 44 0 1319 216 77 29 chr1 126975822 126976307 -115688046 - MLT2F LTR ERVL -43 620 66 363 244 142 25 chr1 126976329 126976526 -115687827 - MER113 DNA MER1_type? -301 220 1 631 143 41 0 chr1 126976806 126976904 -115687449 + Tigger3b DNA MER2_type 1 102 -1129 * 5114 127 83 12 chr1 126976902 126977795 -115686558 + Tigger3b DNA MER2_type 274 1229 -2 2446 82 3 0 chr1 126978004 126978310 -115686043 + AluSg1 SINE Alu 1 307 -2 910 136 0 50 chr1 126978339 126978479 -115685874 - FLAM_C SINE Alu 0 133 1 252 222 16 32 chr1 126979009 126979072 -115685281 + MER5A DNA MER1_type 53 114 -75 181 277 266 21 chr1 126979211 126979305 -115685048 - MIR SINE MIR -132 130 14 2372 59 3 0 chr1 126979501 126979787 -115684566 - AluY SINE Alu -11 300 14 251 217 0 0 chr1 126979903 126979949 -115684404 - L2 LINE L2 -6 3307 3262 235 405 16 16 chr1 126980104 126980225 -115684128 + MIR SINE MIR 20 140 -122 2012 117 3 40 chr1 126980870 126981169 -115683184 - AluSx SINE Alu -24 288 1 270 95 0 0 chr1 126981448 126981490 -115682863 + (TG)n Simple_repeat Simple_repeat 1 42 0 2278 115 0 0 chr1 126981835 126982131 -115682222 + AluSq SINE Alu 1 296 -17 213 187 27 80 chr1 126982137 126982212 -115682141 + MIR SINE MIR 192 262 0 289 325 81 46 chr1 126982436 126982633 -115681720 - L2 LINE L2 -167 3105 2902 2132 112 0 0 chr1 126983091 126983378 -115680975 - AluSx SINE Alu -9 303 17 207 254 0 34 chr1 126983589 126983648 -115680705 + L2 LINE L2 3254 3310 -3 2420 80 6 13 chr1 126984948 126985261 -115679092 - AluSq SINE Alu -2 311 1 384 139 0 0 chr1 126985744 126985823 -115678530 + (TG)n Simple_repeat Simple_repeat 2 80 0 235 329 144 56 chr1 126986159 126986499 -115677854 + L2 LINE L2 2848 3217 -55 306 132 0 0 chr1 126986504 126986557 -115677796 + (CCA)n Simple_repeat Simple_repeat 3 55 0 519 257 158 22 chr1 126986571 126986793 -115677560 - MIR SINE MIR -3 259 8 2290 221 120 64 chr1 126986869 126987660 -115676693 - L1MD3 LINE L1 0 8042 7189 1578 123 9 4 chr1 126987660 126987887 -115676466 - AluSq SINE Alu -85 228 1 2290 221 120 64 chr1 126987887 126988157 -115676196 - L1MD3 LINE L1 -853 7189 6935 2214 189 26 0 chr1 126988158 126988544 -115675809 - L1MD1 LINE L1 -1 6241 5846 1407 189 35 189 chr1 126988550 126989472 -115674881 - L1MD1 LINE L1 -1383 4763 3984 21259 165 26 14 chr1 126989491 126989572 -115674781 - L1 LINE L1 -1359 6206 6127 216 0 0 0 chr1 126989572 126989596 -115674757 + (TTG)n Simple_repeat Simple_repeat 1 24 0 21259 165 26 14 chr1 126989596 126991828 -115672525 - L1 LINE L1 -1438 6127 3923 1834 174 3 3 chr1 126991828 126992138 -115672215 - AluSx SINE Alu -2 310 1 21259 165 26 14 chr1 126992138 126992952 -115671401 - L1 LINE L1 -3642 3923 3120 2418 86 0 6 chr1 126992952 126993265 -115671088 - AluY SINE Alu 0 311 1 21259 165 26 14 chr1 126993265 126996160 -115668193 - L1 LINE L1 -4445 3120 102 3153 146 7 4 chr1 126996160 126996620 -115667733 + LOR1b LTR ERV1 1 461 0 21259 165 26 14 chr1 126996620 126996709 -115667644 - L1 LINE L1 -7463 102 16 2678 241 52 16 chr1 126996706 126997522 -115666831 - L1MD1 LINE L1 -2164 5401 4557 * 587 212 34 34 chr1 126997577 126997723 -115666630 - L1MC4 LINE L1 -1093 6949 6804 246 341 11 17 chr1 126998970 126999146 -115665207 + CT-rich Low_complexity Low_complexity 4 178 0 * 405 238 16 69 chr1 126999045 126999234 -115665119 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 210 380 26 0 chr1 127000008 127000121 -115664232 - MIR SINE MIR -93 169 54 1601 206 36 58 chr1 127004719 127005166 -115659187 - LTR56 LTR ERV1 0 445 9 21 0 0 0 chr1 127007187 127007208 -115657145 + AT_rich Low_complexity Low_complexity 1 21 0 275 207 0 17 chr1 127008922 127008980 -115655373 + FLAM SINE Alu 76 132 -1 1923 147 28 132 chr1 127009277 127009741 -115654612 + MER47B DNA MER2_type 2 417 -1 293 288 144 0 chr1 127010338 127010449 -115653904 + L2 LINE L2 2165 2291 -1023 227 355 21 0 chr1 127010476 127010569 -115653784 + L2 LINE L2 2597 2691 -623 21 57 0 0 chr1 127012536 127012571 -115651782 + AT_rich Low_complexity Low_complexity 1 35 0 368 202 22 0 chr1 127012611 127012700 -115651653 + CT-rich Low_complexity Low_complexity 3 93 0 261 119 0 0 chr1 127012721 127012763 -115651590 + (TCCCC)n Simple_repeat Simple_repeat 4 45 0 1555 130 7 97 chr1 127012769 127013077 -115651276 - AluJb SINE Alu -32 280 1 963 282 193 15 chr1 127013105 127013791 -115650562 + L2 LINE L2 2257 3068 -245 930 172 18 0 chr1 127013791 127013954 -115650399 + AluJb SINE Alu 147 312 0 1414 152 12 12 chr1 127014544 127014560 -115649793 - L1MB3 LINE L1 -353 5830 5815 1821 200 14 6 chr1 127014560 127014896 -115649457 - L1MB3 LINE L1 -17 6166 5825 2027 77 0 4 chr1 127014896 127015178 -115649175 - AluY SINE Alu 0 311 43 1821 200 14 6 chr1 127015178 127015191 -115649162 - L1MB3 LINE L1 -358 5825 5814 1764 106 67 7 chr1 127015191 127015471 -115648882 - L1MA5A LINE L1 0 6297 5998 1414 152 12 12 chr1 127015471 127015697 -115648656 - L1MB3 LINE L1 -366 5817 5587 2561 54 0 13 chr1 127016826 127017139 -115647214 + AluY SINE Alu 1 309 -2 429 318 42 12 chr1 127018246 127018453 -115645900 - MIR3 SINE MIR -30 232 15 187 333 46 9 chr1 127019479 127019587 -115644766 + L2 LINE L2 2101 2212 -1102 23 54 0 0 chr1 127019888 127019925 -115644428 + AT_rich Low_complexity Low_complexity 1 37 0 320 305 43 21 chr1 127019938 127020079 -115644274 - L1ME4a LINE L1 -22 6099 5956 656 331 150 24 chr1 127020095 127020857 -115643496 - L2 LINE L2 -19 3294 2447 24 0 0 0 chr1 127021087 127021111 -115643242 + AT_rich Low_complexity Low_complexity 1 24 0 473 295 60 5 chr1 127021629 127021786 -115642567 - MIR SINE MIR -67 141 11 489 230 52 69 chr1 127022191 127022410 -115641943 + MIR SINE MIR 21 239 -23 2097 115 0 46 chr1 127022687 127023010 -115641343 + AluSg1 SINE Alu 1 308 -1 2491 61 3 0 chr1 127024185 127024479 -115639874 - AluSp SINE Alu -17 296 2 30 27 0 0 chr1 127024773 127024810 -115639543 + AT_rich Low_complexity Low_complexity 1 37 0 225 0 0 0 chr1 127025079 127025104 -115639249 + (T)n Simple_repeat Simple_repeat 1 25 0 380 279 135 8 chr1 127025625 127025869 -115638484 + L1PBa LINE L1 178 452 -6411 * 526 190 250 5 chr1 127025866 127026050 -115638303 + L1PBa LINE L1 947 1175 -5688 2255 98 0 0 chr1 127026066 127026362 -115637991 + AluSg SINE Alu 1 296 -14 13240 202 31 4 chr1 127026374 127030636 -115633717 + L1PBa LINE L1 1339 5860 -1002 317 157 0 0 chr1 127030782 127030833 -115633520 + THE1A LTR MaLR 301 351 -4 7326 60 7 14 chr1 127030833 127031835 -115632518 + L1P LINE L1 1 995 -5151 259 285 115 0 chr1 127032482 127032612 -115631741 - L1ME4a LINE L1 -15 6106 5962 33 66 0 0 chr1 127033809 127033870 -115630483 + AT_rich Low_complexity Low_complexity 1 61 0 393 22 0 0 chr1 127036051 127036097 -115628256 + (TG)n Simple_repeat Simple_repeat 1 46 0 234 156 0 0 chr1 127036754 127036799 -115627554 + T-rich Low_complexity Low_complexity 1 45 0 2237 105 3 10 chr1 127039423 127039719 -115624634 + AluSq SINE Alu 1 294 -19 36 62 0 0 chr1 127039730 127039794 -115624559 + AT_rich Low_complexity Low_complexity 1 64 0 218 349 84 14 chr1 127039833 127040048 -115624305 - L3b LINE CR1 -250 1333 1104 525 268 56 7 chr1 127040609 127040751 -115623602 - MIR SINE MIR -94 168 20 1488 196 45 3 chr1 127040785 127041076 -115623277 - AluJo SINE Alu -9 303 1 898 280 80 42 chr1 127041603 127042056 -115622297 + L1MEc LINE L1 84 553 -5843 252 0 0 0 chr1 127042111 127042139 -115622214 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1314 213 106 40 chr1 127042152 127042782 -115621571 + L1MEc LINE L1 670 1341 -5055 26164 27 0 0 chr1 127042892 127046931 -115617422 + L1PA3 LINE L1 2122 6161 0 5916 100 16 2 chr1 127046974 127047970 -115616383 + L1PB1 LINE L1 5141 6148 -3 1765 207 128 2 chr1 127047973 127048457 -115615896 + L1ME1 LINE L1 5414 5958 -208 354 315 42 6 chr1 127048645 127048810 -115615543 - MARNA DNA Mariner -326 260 90 362 309 79 20 chr1 127049045 127049197 -115615156 + L3 LINE CR1 1370 1530 -47 2171 126 0 0 chr1 127050784 127051086 -115613267 + AluSq SINE Alu 1 302 -11 189 107 0 0 chr1 127052684 127052712 -115611641 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 869 231 10 0 chr1 127052959 127053162 -115611191 - MER3 DNA MER1_type -3 206 2 181 328 16 16 chr1 127053634 127053695 -115610658 - L2 LINE L2 -2 3270 3210 * 490 273 33 13 chr1 127053665 127053815 -115610538 - MIR SINE MIR -27 235 83 185 128 0 26 chr1 127054499 127054538 -115609815 + (TTCTCC)n Simple_repeat Simple_repeat 1 38 0 238 246 131 8 chr1 127057770 127057892 -115606461 - L1ME4a LINE L1 -3 6118 5982 22 56 0 0 chr1 127058314 127058350 -115606003 + AT_rich Low_complexity Low_complexity 1 36 0 450 236 93 0 chr1 127059109 127059249 -115605104 + L1ME LINE L1 3840 3992 -2154 326 243 33 103 chr1 127059317 127059589 -115604764 + MER112 DNA MER1_type 4 256 0 275 284 111 10 chr1 127059843 127060051 -115604302 + L1ME LINE L1 4589 4817 -1329 424 304 52 0 chr1 127060109 127060300 -115604053 + L1ME LINE L1 4965 5165 -981 2148 126 0 17 chr1 127060345 127060646 -115603707 + AluSx SINE Alu 3 298 -14 366 253 158 14 chr1 127060686 127061022 -115603331 + L1ME LINE L1 5258 5650 -514 418 246 62 109 chr1 127061032 127061288 -115603065 + MER112 DNA MER1_type 6 249 -11 234 230 110 70 chr1 127062102 127062202 -115602151 - LTR33 LTR ERVL -412 109 6 614 203 33 13 chr1 127062962 127063115 -115601238 - MLT1D LTR MaLR 0 505 350 370 202 24 24 chr1 127063121 127063205 -115601148 - MLT1D LTR MaLR -421 84 1 1865 148 25 0 chr1 127063599 127063882 -115600471 - AluJb SINE Alu -22 290 1 240 388 122 0 chr1 127063921 127064019 -115600334 + L2 LINE L2 3139 3248 -24 252 310 126 0 chr1 127064072 127064159 -115600194 + L2 LINE L2 3213 3310 -3 765 99 0 14 chr1 127065554 127065798 -115598555 + AluSx SINE Alu 13 301 -8 577 279 90 14 chr1 127065861 127066099 -115598254 - MIR SINE MIR -4 258 3 269 226 0 0 chr1 127066543 127066596 -115597757 - L2 LINE L2 -7 3265 3213 254 262 90 16 chr1 127067217 127067339 -115597014 + MIR SINE MIR 119 249 -13 342 100 0 0 chr1 127067882 127067942 -115596411 + (TG)n Simple_repeat Simple_repeat 2 61 0 353 206 53 61 chr1 127068345 127068476 -115595877 - L1ME4a LINE L1 -1 6120 5991 391 261 87 28 chr1 127068493 127069063 -115595290 - L1ME4a LINE L1 -223 5898 5273 768 22 0 0 chr1 127069520 127069610 -115594743 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 941 153 6 0 chr1 127069647 127069823 -115594530 + CT-rich Low_complexity Low_complexity 4 180 0 1342 183 0 5 chr1 127069838 127070062 -115594291 - AluJo SINE Alu -79 233 11 21 57 0 0 chr1 127070479 127070514 -115593839 + AT_rich Low_complexity Low_complexity 1 35 0 4363 165 78 22 chr1 127070995 127071155 -115593198 - L1MB2 LINE L1 -2 6169 6019 2408 88 0 3 chr1 127071155 127071461 -115592892 - AluSc SINE Alu -4 305 1 4363 165 78 22 chr1 127071461 127072501 -115591852 - L1MB2 LINE L1 -152 6019 4915 414 265 52 73 chr1 127072601 127072929 -115591424 - HAL1b LINE L1 -862 486 166 1408 181 20 16 chr1 127074051 127074305 -115590048 - AluJo SINE Alu -45 267 13 14393 206 38 25 chr1 127074347 127074748 -115589605 - L1PB3 LINE L1 0 6857 6463 2160 119 3 6 chr1 127074748 127075060 -115589293 - AluY SINE Alu 0 311 1 14393 206 38 25 chr1 127075060 127076127 -115588226 - L1PB3 LINE L1 -394 6463 5412 231 43 43 22 chr1 127076127 127076173 -115588180 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 14393 206 38 25 chr1 127076173 127082433 -115581920 - L1PB3 LINE L1 -1445 5412 3 3899 253 95 35 chr1 127082484 127083509 -115580844 - L1MEc LINE L1 -2575 4069 3107 1873 166 10 0 chr1 127083509 127083799 -115580554 - AluSx SINE Alu -19 293 1 3899 253 95 35 chr1 127083799 127084753 -115579600 - L1MEc LINE L1 -3537 3107 2017 30 59 0 0 chr1 127084765 127084816 -115579537 + AT_rich Low_complexity Low_complexity 1 51 0 2153 193 66 44 chr1 127084910 127085458 -115578895 - L1MEc LINE L1 -5981 561 2 1750 166 14 10 chr1 127085469 127085764 -115578589 - AluJb SINE Alu -16 296 1 2162 197 24 0 chr1 127087993 127088374 -115575979 - MLT1B LTR MaLR 0 390 1 341 353 93 23 chr1 127088782 127089125 -115575228 - L2 LINE L2 -20 3293 2927 447 147 52 21 chr1 127089421 127089712 -115574641 + (TA)n Simple_repeat Simple_repeat 1 300 0 610 155 29 10 chr1 127089854 127089957 -115574396 - MER5B DNA MER1_type -72 106 2 370 242 72 46 chr1 127089986 127090139 -115574214 - L1MC/D LINE L1 -2289 5519 5363 270 73 0 0 chr1 127090145 127090186 -115574167 + (TG)n Simple_repeat Simple_repeat 1 41 0 207 0 0 0 chr1 127090461 127090484 -115573869 + (TA)n Simple_repeat Simple_repeat 1 23 0 2233 67 4 0 chr1 127090485 127090755 -115573598 - L1PA7 LINE L1 -11 6143 5873 363 331 108 13 chr1 127090777 127091164 -115573189 - L1MC/D LINE L1 -812 5334 4911 680 340 101 22 chr1 127091202 127091705 -115572648 - L2 LINE L2 -420 2894 2352 285 347 41 29 chr1 127091711 127091953 -115572400 + L1M4 LINE L1 3325 3569 -2577 308 275 70 81 chr1 127092008 127092266 -115572087 + L1MC4a LINE L1 5702 5956 -1852 2058 106 18 3 chr1 127092324 127092606 -115571747 - AluSx SINE Alu -15 297 12 512 317 68 18 chr1 127092661 127092942 -115571411 - L2 LINE L2 -961 2353 2059 399 324 127 0 chr1 127093498 127093671 -115570682 + MER91A DNA MER1_type 2 196 0 192 213 115 33 chr1 127093761 127093822 -115570531 - L2 LINE L2 -70 3243 3178 186 200 20 20 chr1 127093998 127094048 -115570305 + L2 LINE L2 2924 2973 -299 23 33 0 0 chr1 127094447 127094477 -115569876 + AT_rich Low_complexity Low_complexity 1 30 0 726 271 4 58 chr1 127094834 127095111 -115569242 - L1M4 LINE L1 -1098 5048 4787 2077 133 3 3 chr1 127095351 127095651 -115568702 - AluSx SINE Alu -12 300 1 2327 100 3 0 chr1 127096073 127096373 -115567980 - AluSg SINE Alu -9 301 1 508 298 113 76 chr1 127096992 127097398 -115566955 - L2 LINE L2 0 3272 2852 2970 121 7 2 chr1 127097766 127098189 -115566164 + L1PB3 LINE L1 5728 6152 -2 253 204 0 0 chr1 127098261 127098305 -115566048 - L2 LINE L2 -13 3300 3257 22 0 0 0 chr1 127098370 127098392 -115565961 + AT_rich Low_complexity Low_complexity 1 22 0 232 242 179 32 chr1 127098506 127098601 -115565752 - L2 LINE L2 -7 3265 3157 1750 61 0 5 chr1 127098716 127098928 -115565425 + AluY SINE Alu 86 296 -15 366 204 0 0 chr1 127100727 127100815 -115563538 + (TG)n Simple_repeat Simple_repeat 1 88 0 438 229 148 22 chr1 127101731 127101914 -115562439 + MIR SINE MIR 3 208 -54 24 0 0 0 chr1 127101945 127101969 -115562384 + AT_rich Low_complexity Low_complexity 1 24 0 304 257 14 14 chr1 127102023 127102097 -115562256 - MIR3 SINE MIR -17 191 118 525 241 113 26 chr1 127102512 127102707 -115561646 + Charlie8 DNA MER1_type 49 260 -2157 184 274 155 0 chr1 127102851 127102935 -115561418 + L2 LINE L2 2965 3061 -211 467 272 56 17 chr1 127103233 127103415 -115560938 - MIR SINE MIR -61 147 6 260 268 0 0 chr1 127103424 127103480 -115560873 - L2 LINE L2 -14 3258 3203 186 352 40 16 chr1 127103704 127103829 -115560524 - L2 LINE L2 -222 3050 2923 662 291 109 0 chr1 127103864 127104094 -115560259 + MIR SINE MIR 2 256 -6 249 339 137 0 chr1 127105491 127105615 -115558738 + MIR3 SINE MIR 62 202 -6 209 116 0 47 chr1 127105899 127105942 -115558411 + (CATA)n Simple_repeat Simple_repeat 1 41 0 342 67 0 0 chr1 127106013 127106058 -115558295 + (TA)n Simple_repeat Simple_repeat 1 45 0 282 317 176 44 chr1 127106425 127106962 -115557391 + L2 LINE L2 1167 1846 -1468 2188 103 7 0 chr1 127106962 127107254 -115557099 + AluSc SINE Alu 1 294 -15 282 317 176 44 chr1 127107254 127107517 -115556836 + L2 LINE L2 1846 2073 -1241 272 341 17 40 chr1 127107580 127107753 -115556600 + L2 LINE L2 2915 3083 -189 351 307 126 0 chr1 127108037 127108164 -115556189 + L2 LINE L2 3125 3267 -5 483 266 227 25 chr1 127108942 127109263 -115555090 + L2 LINE L2 2778 3159 -154 393 102 0 0 chr1 127109263 127109322 -115555031 + (CA)n Simple_repeat Simple_repeat 2 60 0 279 193 52 30 chr1 127109325 127109460 -115554893 + (TA)n Simple_repeat Simple_repeat 2 139 0 355 207 36 90 chr1 127109469 127109580 -115554773 + L2 LINE L2 3209 3313 0 805 161 0 0 chr1 127110114 127110238 -115554115 + FLAM_C SINE Alu 11 134 -9 273 299 93 9 chr1 127110258 127110365 -115553988 - MIR SINE MIR -57 151 36 397 381 29 12 chr1 127110796 127110969 -115553384 + L2 LINE L2 3097 3272 0 1255 162 4 54 chr1 127111405 127111646 -115552707 - AluJb SINE Alu -1 311 83 427 349 40 0 chr1 127112424 127112573 -115551780 + MIR SINE MIR 47 201 -61 247 329 52 45 chr1 127112658 127112813 -115551540 - MIR3 SINE MIR -49 159 4 309 51 0 0 chr1 127113728 127113767 -115550586 + (CA)n Simple_repeat Simple_repeat 1 39 0 789 277 99 45 chr1 127113900 127114488 -115549865 + L1ME4a LINE L1 5347 5963 -158 528 255 28 0 chr1 127114573 127114714 -115549639 - MIR SINE MIR -57 205 61 2187 119 113 0 chr1 127115633 127115961 -115548392 + MER47A DNA MER2_type 1 365 -1 1009 158 60 33 chr1 127116617 127116801 -115547552 + MER5A DNA MER1_type 1 189 0 285 248 17 179 chr1 127117825 127118127 -115546226 - L2 LINE L2 0 3272 3020 248 258 45 0 chr1 127118548 127118614 -115545739 + L2 LINE L2 3245 3313 0 283 128 0 0 chr1 127119805 127119852 -115544501 + L1MC1 LINE L1 6287 6333 0 445 295 13 32 chr1 127119894 127120050 -115544303 - L2 LINE L2 0 3313 3161 1353 305 211 26 chr1 127120151 127120363 -115543990 - L2 LINE L2 -337 2977 2806 1820 74 0 9 chr1 127120363 127120592 -115543761 - AluY SINE Alu -2 309 83 1353 305 211 26 chr1 127120592 127121879 -115542474 - L2 LINE L2 -508 2806 1200 211 186 17 85 chr1 127122631 127122690 -115541663 + MIR SINE MIR 121 175 -87 298 310 42 14 chr1 127123169 127123311 -115541042 - L2 LINE L2 -55 3258 3113 253 271 75 68 chr1 127123430 127123563 -115540790 - L2 LINE L2 -510 2804 2671 20020 25 6 0 chr1 127123882 127126995 -115537358 + L1PA3 LINE L1 3033 6155 0 1507 128 80 62 chr1 127127111 127127399 -115536954 + AluJo SINE Alu 1 293 -19 2000 106 0 17 chr1 127127544 127127846 -115536507 + AluSx SINE Alu 1 297 -15 642 284 5 46 chr1 127128506 127128609 -115535744 + MIR SINE MIR 44 135 -127 1560 158 113 36 chr1 127128609 127128971 -115535382 + MLT1B LTR MaLR 1 390 0 642 284 5 46 chr1 127128971 127129085 -115535268 + MIR SINE MIR 135 252 -10 182 286 86 0 chr1 127129357 127129462 -115534891 + L2 LINE L2 1721 1834 -1480 1800 136 0 11 chr1 127129535 127129868 -115534485 + AluSx SINE Alu 1 330 0 330 219 79 73 chr1 127130036 127130214 -115534139 - MER104 DNA MER2_type 0 180 2 742 262 42 95 chr1 127130240 127130672 -115533681 - L1ME3 LINE L1 -219 5951 5543 1723 92 4 0 chr1 127130987 127131214 -115533139 - AluSg SINE Alu -33 277 50 786 142 0 16 chr1 127131225 127131352 -115533001 + FLAM_C SINE Alu 16 140 -3 667 281 114 37 chr1 127131393 127132258 -115532095 - L1MEc LINE L1 -3137 2992 2103 29 60 0 0 chr1 127132571 127132621 -115531732 + AT_rich Low_complexity Low_complexity 1 50 0 301 274 75 22 chr1 127132749 127132975 -115531378 - L1MEc LINE L1 -4725 1585 1348 916 276 75 92 chr1 127132992 127134250 -115530103 - L1MEc LINE L1 -4870 1249 14 195 326 76 0 chr1 127134329 127134421 -115529932 + L2 LINE L2 1913 2011 -1303 6675 128 185 89 chr1 127134434 127135981 -115528372 - pTR5 LTR ERV1 0 2438 743 379 309 109 31 chr1 127135994 127136288 -115528065 + L2 LINE L2 2045 2361 -953 1254 272 26 9 chr1 127136819 127137165 -115527188 + LTR16A LTR ERVL 93 444 -6 232 225 75 38 chr1 127137199 127137279 -115527074 + MIR SINE MIR 53 135 -127 276 353 83 15 chr1 127137314 127137447 -115526906 + MIR SINE MIR 32 173 -89 685 300 154 9 chr1 127137672 127138173 -115526180 + L2 LINE L2 2712 3308 -5 362 255 0 53 chr1 127138803 127138897 -115525456 - MIR3 SINE MIR -30 178 90 816 291 209 26 chr1 127138897 127139714 -115524639 + L2 LINE L2 2333 3311 -2 276 241 0 0 chr1 127139766 127139824 -115524529 - MIR SINE MIR -131 77 20 468 0 0 0 chr1 127140124 127140176 -115524177 + (CA)n Simple_repeat Simple_repeat 2 53 0 228 135 0 0 chr1 127141519 127141556 -115522797 + (GGGAA)n Simple_repeat Simple_repeat 1 37 0 531 233 58 37 chr1 127141654 127141843 -115522510 - MIR SINE MIR -7 255 63 310 309 82 9 chr1 127142936 127143046 -115521307 + MIR3 SINE MIR 76 193 -15 580 277 13 13 chr1 127143889 127144044 -115520309 - L2 LINE L2 0 3313 3159 301 145 0 29 chr1 127144244 127144313 -115520040 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 581 228 59 0 chr1 127144524 127144660 -115519693 + MIR SINE MIR 48 191 -71 26 0 0 0 chr1 127144783 127144809 -115519544 + AT_rich Low_complexity Low_complexity 1 26 0 256 265 121 6 chr1 127146363 127146509 -115517844 + MIR SINE MIR 98 261 -1 289 304 56 0 chr1 127146551 127146676 -115517677 - L1ME1 LINE L1 -3 6163 6032 2315 256 62 17 chr1 127146678 127146774 -115517579 - L1M4 LINE L1 -2327 3819 3729 950 158 6 0 chr1 127146774 127146938 -115517415 - L1MB1 LINE L1 -7 6161 5997 2315 256 62 17 chr1 127146938 127147791 -115516562 - L1M4 LINE L1 -2417 3729 2827 278 307 39 72 chr1 127147833 127147986 -115516367 - L2 LINE L2 -3 3269 3122 328 198 30 129 chr1 127149164 127149265 -115515088 + MIR SINE MIR 90 180 -82 1428 194 0 4 chr1 127149754 127150012 -115514341 + AluJb SINE Alu 1 257 -55 1588 202 76 9 chr1 127150370 127150712 -115513641 + MLT1A1 LTR MaLR 1 365 0 410 207 75 194 chr1 127151508 127151735 -115512618 + MER58C DNA MER1_type 4 203 -12 278 281 68 116 chr1 127151741 127152051 -115512302 - L2 LINE L2 -10 3262 2968 702 292 41 0 chr1 127152220 127152415 -115511938 + MIR SINE MIR 53 255 -7 932 191 51 0 chr1 127154031 127154209 -115510144 - MIR SINE MIR -70 192 6 871 226 40 0 chr1 127155836 127156013 -115508340 + MIR SINE MIR 79 262 0 250 326 10 10 chr1 127156979 127157077 -115507276 + GA-rich Low_complexity Low_complexity 1 98 0 529 352 34 0 chr1 127157869 127158048 -115506305 - MIR SINE MIR -48 214 30 548 315 15 20 chr1 127158498 127158695 -115505658 - MIR SINE MIR -18 244 49 1262 198 17 40 chr1 127158748 127159046 -115505307 - AluJo SINE Alu -21 291 1 1310 212 55 58 chr1 127160257 127160318 -115504035 - MLT1H1 LTR MaLR 0 555 495 2177 109 0 0 chr1 127160318 127160611 -115503742 - AluSc SINE Alu -16 293 1 1310 212 55 58 chr1 127160611 127161029 -115503324 - MLT1H1 LTR MaLR -60 495 5 486 271 97 7 chr1 127161093 127161248 -115503105 - MIR3 SINE MIR -7 201 33 878 243 0 5 chr1 127161970 127162159 -115502194 - MER5A DNA MER1_type -1 188 1 436 215 171 11 chr1 127162261 127162418 -115501935 + MER5A DNA MER1_type 4 189 0 378 0 0 0 chr1 127163388 127163430 -115500923 + (TG)n Simple_repeat Simple_repeat 2 43 0 181 254 36 18 chr1 127163826 127163881 -115500472 - L2 LINE L2 0 3272 3217 4216 255 144 34 chr1 127163910 127165419 -115498934 - L2 LINE L2 -113 3200 1858 1786 146 17 0 chr1 127165419 127165713 -115498640 + AluJb SINE Alu 7 305 -7 4216 255 144 34 chr1 127165713 127165926 -115498427 - L2 LINE L2 -1455 1858 1670 1107 155 5 31 chr1 127165926 127166119 -115498234 + MER5A DNA MER1_type 1 188 -1 4216 255 144 34 chr1 127166119 127166213 -115498140 - L2 LINE L2 -1643 1670 1194 614 275 60 23 chr1 127166215 127166433 -115497920 + MLT1L LTR MaLR 149 374 -241 221 300 69 50 chr1 127166545 127166705 -115497648 + MIR SINE MIR 73 235 -27 851 208 13 13 chr1 127168246 127168405 -115495948 - FRAM SINE Alu -17 159 1 345 267 53 53 chr1 127168406 127168537 -115495816 + L2 LINE L2 3137 3267 -5 1198 224 93 10 chr1 127168547 127168860 -115495493 - MER58B DNA MER1_type 0 341 3 304 285 159 33 chr1 127169319 127169470 -115494883 - MIR SINE MIR -52 210 41 222 329 57 0 chr1 127170024 127170094 -115494259 + MIR SINE MIR 82 155 -107 841 263 6 0 chr1 127171837 127172012 -115492341 + MER45A DNA AcHobo 2 177 -1 239 254 61 26 chr1 127172041 127172155 -115492198 + MLT1L LTR MaLR 55 172 -443 372 296 43 32 chr1 127172291 127172477 -115491876 + MLT1J LTR MaLR 230 417 -94 359 324 4 37 chr1 127173613 127173854 -115490499 + L1MC4a LINE L1 3852 4084 -2062 917 218 18 15 chr1 127173866 127174197 -115490156 + MER96B DNA MER1_type? 1 417 0 608 205 168 6 chr1 127174310 127174471 -115489882 + MIR SINE MIR 54 240 -22 416 304 119 51 chr1 127174486 127174897 -115489456 + L1MC4a LINE L1 4214 4652 -1494 280 215 7 0 chr1 127174947 127175019 -115489334 + L1M2 LINE L1 4722 4795 -1351 332 314 40 29 chr1 127175110 127175285 -115489068 + L1MC4a LINE L1 4887 5063 -1083 282 202 38 0 chr1 127175599 127175690 -115488663 + L1M2 LINE L1 5338 5431 -720 1949 132 7 10 chr1 127175775 127176095 -115488258 - AluSx SINE Alu 0 312 1 2724 126 11 7 chr1 127176123 127176561 -115487792 - L1MA2 LINE L1 0 6304 5865 280 386 157 0 chr1 127176656 127176796 -115487557 - L2 LINE L2 -9 3263 3102 6755 122 29 3 chr1 127176801 127178504 -115485849 - L1MA3 LINE L1 -444 5861 4112 444 246 28 84 chr1 127178480 127178891 -115485462 + L1MC4a LINE L1 5517 5780 -341 * 364 241 23 0 chr1 127178892 127178979 -115485374 + L2 LINE L2 3221 3309 -4 492 287 28 21 chr1 127179097 127179240 -115485113 + MIR SINE MIR 48 191 -71 313 333 142 67 chr1 127179577 127179979 -115484374 - L2 LINE L2 -9 3263 2832 1841 184 7 0 chr1 127179980 127180402 -115483951 + AluJb SINE Alu 3 426 0 802 346 65 14 chr1 127180406 127180822 -115483531 - L2 LINE L2 -439 2875 2439 304 293 27 14 chr1 127180822 127180969 -115483384 - L1M4 LINE L1 -1817 4329 4181 322 218 13 0 chr1 127180984 127181062 -115483291 - LTR33A LTR ERVL -1 522 444 417 344 94 49 chr1 127181591 127182016 -115482337 + L2 LINE L2 2828 3271 -1 21 71 0 0 chr1 127183339 127183381 -115480972 + AT_rich Low_complexity Low_complexity 1 42 0 425 228 137 70 chr1 127183727 127184056 -115480297 + MLT1J LTR MaLR 110 460 -51 734 260 141 0 chr1 127184612 127184839 -115479514 + MIR SINE MIR 3 261 -1 1096 186 25 79 chr1 127185319 127185598 -115478755 + AluJo SINE Alu 49 312 0 1015 171 48 16 chr1 127186044 127186231 -115478122 + AluJo SINE Alu 120 312 0 1079 294 103 7 chr1 127186354 127186790 -115477563 - MLT1L LTR MaLR -49 566 89 2363 76 6 22 chr1 127187240 127187555 -115476798 - AluSp SINE Alu -3 310 1 957 293 49 29 chr1 127237770 127238397 -115425956 - L1ME3 LINE L1 -333 5829 5188 1190 176 75 30 chr1 127238420 127238687 -115425666 - MLT1D LTR MaLR 0 505 227 485 167 98 0 chr1 127238834 127238936 -115425417 + MER5A DNA MER1_type 4 115 -74 733 305 80 32 chr1 127239087 127239739 -115424614 - L1ME3 LINE L1 -1563 4583 3901 2031 120 60 0 chr1 127239987 127240270 -115424083 + AluSp SINE Alu 1 300 -13 271 327 48 0 chr1 127240303 127240407 -115423946 - L2 LINE L2 -2 3311 3203 231 209 11 88 chr1 127240452 127240543 -115423810 + MIR SINE MIR 74 157 -105 316 310 88 6 chr1 127240592 127240763 -115423590 - MLT1L LTR MaLR -55 560 376 405 345 44 26 chr1 127240822 127241048 -115423305 - MLT1L LTR MaLR -364 251 22 754 159 18 77 chr1 127241048 127241218 -115423135 + MER21A LTR ERV1 1 160 -771 3476 164 36 136 chr1 127241342 127242315 -115422038 + MER21A LTR ERV1 27 902 -29 230 319 11 11 chr1 127242348 127242439 -115421914 + MIR SINE MIR 167 257 -5 207 292 15 15 chr1 127242615 127242680 -115421673 - L2 LINE L2 -219 3053 2989 1969 197 18 52 chr1 127243380 127243827 -115420526 + MER101 LTR ERV1 5 436 -38 252 290 61 30 chr1 127245061 127245192 -115419161 + L2 LINE L2 3137 3271 -1 471 118 59 0 chr1 127245999 127246152 -115418201 + (TA)n Simple_repeat Simple_repeat 1 162 0 2340 104 0 0 chr1 127246152 127246449 -115417904 - AluSg SINE Alu -13 297 1 309 26 0 0 chr1 127246528 127246566 -115417787 + (CA)n Simple_repeat Simple_repeat 1 38 0 215 297 31 0 chr1 127246758 127246822 -115417531 - L2 LINE L2 -23 3249 3184 1551 207 47 51 chr1 127247537 127248006 -115416347 + MLT1C LTR MaLR 1 467 0 200 298 75 100 chr1 127248037 127248295 -115416058 - L2 LINE L2 -1041 2273 2029 508 91 0 0 chr1 127248295 127248372 -115415981 - L1PA7 LINE L1 0 6154 6078 200 298 75 100 chr1 127248372 127248552 -115415801 - L2 LINE L2 -1285 2029 1846 21 57 0 0 chr1 127249904 127249939 -115414414 + AT_rich Low_complexity Low_complexity 1 35 0 2092 121 3 57 chr1 127249939 127250270 -115414083 - AluSq SINE Alu 0 313 1 396 239 88 0 chr1 127250570 127250683 -115413670 - MIR3 SINE MIR -84 124 2 1959 172 8 14 chr1 127251388 127251755 -115412598 + MLT1A1 LTR MaLR 1 365 0 206 259 49 25 chr1 127251755 127251836 -115412517 + L2 LINE L2 2624 2706 -608 256 303 45 84 chr1 127252098 127252276 -115412077 + L3 LINE CR1 319 489 -1088 493 190 44 143 chr1 127252328 127252588 -115411765 - MLT1J2 LTR MaLR 0 450 237 2091 124 0 34 chr1 127252588 127252727 -115411626 + AluSx SINE Alu 1 143 -169 2313 102 0 0 chr1 127252727 127253020 -115411333 + AluY SINE Alu 1 293 -18 2091 124 0 34 chr1 127253020 127253203 -115411150 + AluSx SINE Alu 143 312 0 493 190 44 143 chr1 127253203 127253419 -115410934 - MLT1J2 LTR MaLR -213 237 1 199 276 16 73 chr1 127253420 127253543 -115410810 + MIR SINE MIR 86 201 -61 2009 163 90 10 chr1 127253575 127253986 -115410367 + L1ME1 LINE L1 5533 5976 -190 299 278 68 42 chr1 127254195 127254386 -115409967 - MIR SINE MIR -61 201 6 449 333 26 5 chr1 127254939 127255128 -115409225 - MIR SINE MIR -50 212 20 180 0 0 0 chr1 127255173 127255193 -115409160 + (T)n Simple_repeat Simple_repeat 1 20 0 1258 131 58 0 chr1 127255436 127255627 -115408726 + MER1B DNA MER1_type 138 339 0 5069 131 34 38 chr1 127255670 127256545 -115407808 + MER4D LTR ERV1 1 872 0 440 317 79 6 chr1 127257550 127257714 -115406639 + MIR3 SINE MIR 20 195 -13 1022 156 0 40 chr1 127257836 127258009 -115406344 - AluJo SINE Alu -111 201 36 232 306 120 0 chr1 127259215 127259323 -115405030 + MIR SINE MIR 75 195 -67 1321 253 62 56 chr1 127259438 127259921 -115404432 + L1ME2 LINE L1 5426 5911 -253 * 3363 166 63 24 chr1 127259511 127260173 -115404180 + L1MB2 LINE L1 5476 6163 -8 218 324 69 0 chr1 127260316 127260418 -115403935 - MIR SINE MIR -54 208 100 902 240 21 13 chr1 127260867 127261100 -115403253 - MIR SINE MIR 0 262 28 324 117 67 50 chr1 127261460 127261520 -115402833 - MLT1K LTR MaLR -4 584 524 333 339 15 8 chr1 127261717 127261847 -115402506 + MER5A DNA MER1_type 59 189 0 558 268 0 43 chr1 127261975 127262113 -115402240 + L2 LINE L2 3141 3272 0 272 193 101 67 chr1 127262157 127262276 -115402077 - MIR SINE MIR -70 192 70 216 179 18 71 chr1 127263383 127263439 -115400914 - L2 LINE L2 -6 3266 3214 197 327 0 0 chr1 127264169 127264221 -115400132 - L2 LINE L2 -70 3202 3151 870 218 105 66 chr1 127265245 127265275 -115399078 - LTR56 LTR ERV1 0 445 418 1930 148 7 3 chr1 127265275 127265565 -115398788 + AluSx SINE Alu 1 291 -21 870 218 105 66 chr1 127265565 127265961 -115398392 - LTR56 LTR ERV1 -27 418 2 216 235 0 39 chr1 127266152 127266203 -115398150 - L2 LINE L2 -8 3264 3216 1244 145 36 52 chr1 127266562 127266811 -115397542 + AluJo SINE Alu 42 286 -26 29 0 0 0 chr1 127266815 127266844 -115397509 + AT_rich Low_complexity Low_complexity 1 29 0 216 264 286 0 chr1 127267105 127267196 -115397157 + MIR SINE MIR 88 204 -58 24 0 0 0 chr1 127267241 127267265 -115397088 + AT_rich Low_complexity Low_complexity 1 24 0 230 56 28 0 chr1 127267540 127267576 -115396777 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1239 53 0 13 chr1 127267576 127267718 -115396635 - MER107 DNA MER1_type -52 145 4 213 319 33 11 chr1 127268858 127268949 -115395404 + MIR SINE MIR 94 186 -76 658 256 77 30 chr1 127270738 127271035 -115393318 - L1MC4a LINE L1 -1923 5885 5575 300 185 109 22 chr1 127271534 127271626 -115392727 - MLT1F LTR MaLR -55 487 388 1184 286 176 10 chr1 127271739 127272228 -115392125 - MLT1K LTR MaLR -17 571 2 327 313 106 34 chr1 127272377 127272556 -115391797 - L3 LINE CR1 -1 1576 1385 457 259 14 22 chr1 127272606 127272745 -115391608 - MIR SINE MIR -29 233 96 996 313 191 17 chr1 127272794 127273035 -115391318 - L3 LINE CR1 -222 1355 1157 2053 122 7 10 chr1 127273035 127273329 -115391024 + AluSx SINE Alu 1 293 -19 996 313 191 17 chr1 127273329 127273866 -115390487 - L3 LINE CR1 -420 1157 443 668 302 0 0 chr1 127273982 127274171 -115390182 + MIR SINE MIR 63 251 -11 1879 135 43 40 chr1 127274277 127274508 -115389845 - L1MA4 LINE L1 -6 6294 6060 2017 141 7 3 chr1 127274508 127274806 -115389547 - AluJb SINE Alu -13 299 1 1879 135 43 40 chr1 127274806 127274945 -115389408 - L1MA4 LINE L1 -240 6060 5923 221 169 0 46 chr1 127275319 127275384 -115388969 + CT-rich Low_complexity Low_complexity 2 63 0 1780 181 0 0 chr1 127275556 127275838 -115388515 + AluJb SINE Alu 1 282 -30 450 204 0 0 chr1 127275841 127275954 -115388399 + GA-rich Low_complexity Low_complexity 3 115 0 283 235 122 0 chr1 127276464 127276562 -115387791 - MIR SINE MIR -117 145 36 562 42 34 50 chr1 127276643 127276762 -115387591 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 2097 123 16 19 chr1 127276788 127277098 -115387255 - AluSx SINE Alu -3 309 1 1728 192 99 19 chr1 127277132 127277564 -115386789 - MLT1C LTR MaLR 0 467 1 29 0 0 0 chr1 127277688 127277717 -115386636 + AT_rich Low_complexity Low_complexity 1 29 0 276 183 191 61 chr1 127278918 127279049 -115385304 + L2 LINE L2 3162 3309 -4 2778 131 7 37 chr1 127279127 127279586 -115384767 - MER65A LTR ERV1 0 445 1 435 264 121 6 chr1 127279848 127280022 -115384331 + MER117 DNA MER1_type 4 197 0 933 213 23 19 chr1 127280201 127280417 -115383936 + U3 snRNA snRNA 1 217 0 771 262 14 9 chr1 127281220 127281430 -115382923 + MIR SINE MIR 50 260 -2 804 298 61 31 chr1 127281488 127281983 -115382370 + L1MC/D LINE L1 5174 5670 -482 184 306 0 0 chr1 127281985 127282034 -115382319 + L2 LINE L2 3199 3247 -25 434 246 29 18 chr1 127282034 127282185 -115382168 + L1MC/D LINE L1 5660 5811 -353 10680 184 34 88 chr1 127282290 127283249 -115381104 - L1M2 LINE L1 -620 6379 5369 772 194 0 22 chr1 127283249 127283388 -115380965 - AluJo SINE Alu -175 137 2 10680 184 34 88 chr1 127283388 127284161 -115380192 - L1M2 LINE L1 -1630 5369 4556 1241 167 0 20 chr1 127284161 127284365 -115379988 + AluJb SINE Alu 107 306 -6 10680 184 34 88 chr1 127284365 127286148 -115378205 - L1M2 LINE L1 -2443 4556 2823 21 57 0 0 chr1 127286226 127286261 -115378092 + AT_rich Low_complexity Low_complexity 1 35 0 2148 133 0 0 chr1 127287030 127287324 -115377029 + AluSx SINE Alu 1 294 -18 217 266 64 73 chr1 127287544 127287653 -115376700 - L2 LINE L2 -5 3267 3160 187 267 0 0 chr1 127288387 127288432 -115375921 + MIR SINE MIR 56 100 -108 393 270 29 22 chr1 127288798 127288935 -115375418 - MIR SINE MIR -98 164 27 228 229 181 0 chr1 127289927 127290010 -115374343 - MIR3 SINE MIR -26 182 85 844 204 44 0 chr1 127290351 127290532 -115373821 + MER5A DNA MER1_type 1 189 0 186 214 0 204 chr1 127290784 127290887 -115373466 + L2 LINE L2 3183 3264 -49 948 224 10 39 chr1 127290900 127291105 -115373248 + MER58A DNA MER1_type 26 224 0 262 228 0 0 chr1 127291107 127291164 -115373189 + L2 LINE L2 3256 3312 -1 430 272 35 0 chr1 127291252 127291366 -115372987 + MIR SINE MIR 38 155 -107 585 219 0 8 chr1 127294417 127294572 -115369781 - FLAM_C SINE Alu 0 154 1 234 143 0 0 chr1 127295632 127295667 -115368686 + Charlie8 DNA MER1_type 1382 1416 -1001 229 280 11 32 chr1 127295833 127295926 -115368427 + MIR SINE MIR 71 161 -101 4053 124 22 3 chr1 127296093 127296714 -115367639 + L1PA16 LINE L1 5383 6015 -151 2722 26 0 7 chr1 127296819 127297126 -115367227 - AluY SINE Alu -6 305 1 309 148 16 16 chr1 127297127 127297188 -115367165 + MER5A DNA MER1_type 127 187 -2 885 252 66 4 chr1 127297189 127297415 -115366938 - L1ME LINE L1 -506 5656 5417 250 167 24 0 chr1 127297442 127297484 -115366869 - LTR33 LTR ERVL 0 521 479 360 0 0 0 chr1 127297495 127297535 -115366818 + (TG)n Simple_repeat Simple_repeat 1 40 0 384 59 0 0 chr1 127297535 127297586 -115366767 + (GA)n Simple_repeat Simple_repeat 2 52 0 732 186 8 0 chr1 127297888 127298012 -115366341 + MLT1A1 LTR MaLR 205 329 -36 246 73 24 0 chr1 127298013 127298054 -115366299 + L2 LINE L2 3265 3306 -7 417 248 86 0 chr1 127298066 127298183 -115366170 - MIR SINE MIR -115 147 21 1958 98 0 4 chr1 127298439 127298685 -115365668 + AluSq SINE Alu 1 245 -68 278 71 3 46 chr1 127298688 127298738 -115365615 - L1ME LINE L1 -748 5418 5373 665 331 93 41 chr1 127298739 127299243 -115365110 - L2 LINE L2 -1612 1702 1153 2121 84 53 7 chr1 127299243 127299528 -115364825 + AluSg SINE Alu 1 298 -12 665 331 93 41 chr1 127299528 127299702 -115364651 - L2 LINE L2 -2161 1153 989 1046 118 15 67 chr1 127299807 127300002 -115364351 - L1MC1 LINE L1 0 6333 6149 2084 155 75 11 chr1 127300003 127300378 -115363975 + MSTB1 LTR MaLR 1 399 -33 1717 150 60 0 chr1 127300383 127300683 -115363670 - L1MC1 LINE L1 -181 6152 5835 380 349 12 0 chr1 127300690 127300856 -115363497 - L2 LINE L2 -2452 862 695 738 299 63 24 chr1 127303513 127303891 -115360462 - L3 LINE CR1 -69 1508 1116 1096 267 98 12 chr1 127304383 127304748 -115359605 - L3 LINE CR1 -452 1125 704 514 213 128 30 chr1 127304748 127304912 -115359441 - MER104 DNA MER2_type 0 180 1 1096 267 98 12 chr1 127304912 127305048 -115359305 - L3 LINE CR1 -873 704 581 2275 90 3 10 chr1 127305242 127305543 -115358810 + AluY SINE Alu 1 299 -12 598 131 0 0 chr1 127305707 127305791 -115358562 + MLT1A1 LTR MaLR 1 84 -281 2179 107 14 0 chr1 127305792 127306082 -115358271 + AluSp SINE Alu 3 296 -17 522 291 55 0 chr1 127306554 127306736 -115357617 + MIR SINE MIR 20 211 -51 307 208 48 72 chr1 127306795 127306903 -115357450 - L1ME4a LINE L1 -34 6087 5981 1955 143 3 29 chr1 127306903 127307211 -115357142 - AluSg SINE Alu -8 302 3 307 208 48 72 chr1 127307211 127307227 -115357126 - L1ME4a LINE L1 -140 5981 5966 21 36 0 0 chr1 127307265 127307293 -115357060 + AT_rich Low_complexity Low_complexity 1 28 0 295 225 50 25 chr1 127307316 127307396 -115356957 - U6 snRNA snRNA -2 105 24 724 200 0 8 chr1 127307415 127307540 -115356813 - FLAM_A SINE Alu -9 124 1 2420 97 57 17 chr1 127308039 127308389 -115355964 - THE1B LTR MaLR 0 364 1 11941 93 6 6 chr1 127308389 127309970 -115354383 - THE1B-int LTR MaLR 0 1580 1 2214 109 49 55 chr1 127309970 127310187 -115354166 - THE1B LTR MaLR 0 364 148 2156 127 3 22 chr1 127310187 127310503 -115353850 + AluSp SINE Alu 3 312 -1 2214 109 49 55 chr1 127310503 127310651 -115353702 - THE1B LTR MaLR -216 148 1 411 286 29 0 chr1 127312622 127312727 -115351626 + Charlie1 DNA MER1_type 2 109 -2652 910 263 65 65 chr1 127312774 127313158 -115351195 + MLT1J2 LTR MaLR 39 422 -28 1976 183 80 54 chr1 127313561 127314098 -115350255 + MER34B LTR ERV1 11 561 -4 544 304 91 24 chr1 127314098 127314427 -115349926 + L3 LINE CR1 1061 1411 -166 1055 248 106 43 chr1 127315303 127315490 -115348863 - L1ME4a LINE L1 -305 5857 5683 618 186 77 77 chr1 127315490 127315610 -115348743 + MER5A DNA MER1_type 5 127 -62 2803 22 0 6 chr1 127315610 127315923 -115348430 - AluY SINE Alu 0 311 1 618 186 77 77 chr1 127315923 127315985 -115348368 + MER5A DNA MER1_type 126 187 -2 1055 248 106 43 chr1 127315985 127316212 -115348141 - L1ME4a LINE L1 -479 5683 5417 239 171 24 0 chr1 127316240 127316281 -115348072 - LTR33 LTR ERVL -1 520 479 324 0 0 0 chr1 127316292 127316328 -115348025 + (TG)n Simple_repeat Simple_repeat 1 36 0 402 57 0 0 chr1 127316328 127316381 -115347972 + (GA)n Simple_repeat Simple_repeat 2 54 0 732 186 8 0 chr1 127316683 127316807 -115347546 + MLT1A1 LTR MaLR 205 329 -36 246 73 24 0 chr1 127316808 127316849 -115347504 + L2 LINE L2 3265 3306 -7 417 248 86 0 chr1 127316861 127316978 -115347375 - MIR SINE MIR -115 147 21 1958 98 0 4 chr1 127317234 127317480 -115346873 + AluSq SINE Alu 1 245 -68 278 71 3 46 chr1 127317483 127317533 -115346820 - L1ME4a LINE L1 -762 5421 5373 668 331 93 41 chr1 127317534 127318038 -115346315 - L2 LINE L2 -1612 1702 1153 2121 84 53 7 chr1 127318038 127318323 -115346030 + AluSg SINE Alu 1 298 -12 668 331 93 41 chr1 127318323 127318497 -115345856 - L2 LINE L2 -2161 1153 989 1046 118 15 67 chr1 127318602 127318797 -115345556 - L1MC1 LINE L1 0 6333 6149 2021 156 80 11 chr1 127318798 127319171 -115345182 + MSTB1 LTR MaLR 1 399 -33 1717 150 60 0 chr1 127319176 127319476 -115344877 - L1MC1 LINE L1 -181 6152 5835 392 343 12 0 chr1 127319483 127319649 -115344704 - L2 LINE L2 -2452 862 695 236 327 50 0 chr1 127320176 127320277 -115344076 + MIR SINE MIR 154 259 -3 193 305 180 8 chr1 127321048 127321176 -115343177 - L2 LINE L2 -6 3266 3117 321 330 26 26 chr1 127322072 127322187 -115342166 + MIR SINE MIR 17 131 -77 625 62 0 62 chr1 127322187 127322283 -115342070 + HY3 scRNA scRNA 11 100 -1 2208 98 7 7 chr1 127322301 127322598 -115341755 + AluSx SINE Alu 1 297 -15 643 210 123 20 chr1 127322836 127323031 -115341322 - MIR SINE MIR 0 262 48 185 163 47 0 chr1 127324037 127324080 -115340273 + GA-rich Low_complexity Low_complexity 4 48 0 359 300 172 6 chr1 127325213 127325393 -115338960 - MIR SINE MIR 0 262 53 180 152 0 0 chr1 127325535 127325568 -115338785 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1761 153 10 32 chr1 127325729 127326042 -115338311 + AluJo SINE Alu 1 306 -6 201 229 224 71 chr1 127326042 127326225 -115338128 + L3 LINE CR1 1119 1329 -248 747 139 0 33 chr1 127326225 127326347 -115338006 + FLAM_C SINE Alu 1 118 -15 32 0 0 0 chr1 127326347 127326379 -115337974 + AT_rich Low_complexity Low_complexity 1 32 0 404 246 109 51 chr1 127326512 127326650 -115337703 - MER69 DNA AcHobo -30 2496 2 1199 248 88 8 chr1 127326708 127327095 -115337258 - L1MC4a LINE L1 -1836 5972 5555 1286 61 0 0 chr1 127328293 127328458 -115335895 - L1PA5 LINE L1 0 6154 5990 2754 116 77 2 chr1 127328833 127329298 -115335055 + L1MB3 LINE L1 5683 6182 -1 1902 142 0 3 chr1 127329301 127329597 -115334756 - AluSx SINE Alu -17 295 1 37 0 0 0 chr1 127329599 127329636 -115334717 + AT_rich Low_complexity Low_complexity 1 37 0 322 168 24 131 chr1 127331178 127331312 -115333041 + L1MC4 LINE L1 1974 6989 -1333 1006 241 0 0 chr1 127331315 127331510 -115332843 - MIR SINE MIR -21 241 47 658 97 253 26 chr1 127333255 127333409 -115330944 - MER53 DNA DNA 0 189 1 204 257 158 20 chr1 127333520 127333621 -115330732 + MIR SINE MIR 117 231 -31 188 302 0 16 chr1 127333655 127333718 -115330635 + MIR SINE MIR 200 261 -1 442 296 107 43 chr1 127333744 127333803 -115330550 - MIR SINE MIR 0 262 208 1862 152 3 7 chr1 127333803 127334099 -115330254 - AluJb SINE Alu -16 296 2 442 296 107 43 chr1 127334099 127334272 -115330081 - MIR SINE MIR -54 208 15 21 0 0 0 chr1 127334542 127334563 -115329790 + AT_rich Low_complexity Low_complexity 1 21 0 473 202 30 0 chr1 127335233 127335332 -115329021 - L1MB4 LINE L1 0 6180 6079 263 266 0 18 chr1 127336545 127336654 -115327699 + (ATGGTG)n Simple_repeat Simple_repeat 4 110 0 334 270 315 11 chr1 127337110 127337288 -115327065 + MIR SINE MIR 20 251 -11 366 230 20 30 chr1 127337956 127338056 -115326297 - MER5A DNA MER1_type -34 155 57 466 274 47 71 chr1 127338566 127338778 -115325575 - MIR SINE MIR -55 207 1 324 0 0 0 chr1 127339303 127339339 -115325014 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr1 127339338 127339360 -115324993 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 * 398 292 35 0 chr1 127339370 127339483 -115324870 - L2 LINE L2 -20 3252 3136 515 243 7 50 chr1 127339887 127340027 -115324326 + L2 LINE L2 3139 3272 0 2335 162 8 22 chr1 127340348 127340750 -115323603 + MSTD LTR MaLR 1 396 0 291 151 179 28 chr1 127340890 127340996 -115323357 - MER96B DNA MER1_type? -239 178 57 587 303 98 8 chr1 127342627 127342861 -115321492 - MIR SINE MIR -6 256 2 195 42 0 0 chr1 127342916 127342940 -115321413 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 422 303 42 0 chr1 127342941 127343060 -115321293 - L2 LINE L2 -7 3265 3142 447 281 88 9 chr1 127343100 127343214 -115321139 + MER91A DNA MER1_type 20 142 -54 1769 145 73 0 chr1 127343304 127343593 -115320760 - AluSx SINE Alu -2 310 1 394 281 0 0 chr1 127344215 127344304 -115320049 - MIR SINE MIR -115 147 59 319 312 53 18 chr1 127344536 127344706 -115319647 - MIR3 SINE MIR -3 205 30 309 296 12 0 chr1 127346669 127346750 -115317603 - L2 LINE L2 -5 3267 3186 185 227 23 114 chr1 127346907 127346995 -115317358 - L2 LINE L2 -215 3057 2978 253 261 9 54 chr1 127347820 127347931 -115316422 + GA-rich Low_complexity Low_complexity 5 110 0 1640 85 0 0 chr1 127348644 127348855 -115315498 + AluSc SINE Alu 85 295 -14 379 130 84 12 chr1 127349250 127349322 -115315031 + L1MB3 LINE L1 5711 5783 -371 4233 165 26 4 chr1 127349322 127350020 -115314333 - MER44D DNA MER2_type 0 605 21 2188 152 7 30 chr1 127350020 127350448 -115313905 + L1MB3 LINE L1 5764 6181 -2 1151 207 44 72 chr1 127350454 127350579 -115313774 - L1MD1 LINE L1 -65 6177 6050 330 87 0 0 chr1 127350579 127350625 -115313728 + (TG)n Simple_repeat Simple_repeat 2 47 0 1151 207 44 72 chr1 127350625 127350767 -115313586 - L1MD1 LINE L1 -192 6050 5865 543 278 17 23 chr1 127350767 127350943 -115313410 - L1MB8 LINE L1 -256 5922 5748 754 132 0 0 chr1 127352507 127352613 -115311740 - FLAM_A SINE Alu -15 127 22 373 367 27 0 chr1 127353274 127353462 -115310891 - L2 LINE L2 -351 2963 2771 1434 168 24 31 chr1 127354092 127354384 -115309969 + AluJo SINE Alu 1 290 -22 477 181 48 19 chr1 127354558 127354663 -115309690 + MER81 DNA DNA 4 111 -3 250 219 156 0 chr1 127355357 127355421 -115308932 - MER63 DNA MER1_type 0 1060 987 408 148 0 0 chr1 127355425 127355486 -115308867 - MER63 DNA MER1_type -328 734 674 676 250 85 25 chr1 127355711 127355947 -115308406 + MIR SINE MIR 12 261 -1 704 272 106 13 chr1 127356740 127356975 -115307378 - MLT1J LTR MaLR -8 503 247 391 239 39 69 chr1 127357038 127357168 -115307185 - MLT1J LTR MaLR -383 128 3 537 350 124 15 chr1 127357344 127358022 -115306331 + L2 LINE L2 2510 3268 -4 349 228 94 24 chr1 127358406 127358533 -115305820 - MIR3 SINE MIR -64 144 9 466 335 12 12 chr1 127359427 127359588 -115304765 - MIR SINE MIR -50 212 52 232 286 0 0 chr1 127360927 127360983 -115303370 + L2 LINE L2 3241 3296 -17 354 241 150 8 chr1 127361109 127361242 -115303111 - MIR3 SINE MIR -22 186 35 238 188 0 0 chr1 127361366 127361414 -115302939 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr1 127362037 127362057 -115302296 + (TG)n Simple_repeat Simple_repeat 1 20 0 240 35 0 0 chr1 127362284 127362313 -115302040 + (T)n Simple_repeat Simple_repeat 1 29 0 387 287 16 33 chr1 127365416 127365538 -115298815 + MER5B DNA MER1_type 59 178 0 810 125 0 0 chr1 127365748 127365860 -115298493 + AluJb SINE Alu 13 124 -188 27 0 0 0 chr1 127365868 127365895 -115298458 + AT_rich Low_complexity Low_complexity 1 27 0 236 207 17 0 chr1 127366004 127366062 -115298291 - MIR3 SINE MIR 0 208 150 696 247 246 37 chr1 127366163 127366766 -115297587 + L2 LINE L2 2553 3295 -18 236 188 12 71 chr1 127366806 127366891 -115297462 + L1ME4a LINE L1 6039 6118 -3 442 179 48 0 chr1 127367936 127368020 -115296333 - MER58 DNA MER1_type -87 128 41 932 238 5 18 chr1 127368021 127368244 -115296109 + MER58A DNA MER1_type 4 223 -1 614 247 30 40 chr1 127368246 127368444 -115295909 - MIR SINE MIR -47 215 20 287 262 19 68 chr1 127369001 127369104 -115295249 + MARNA DNA Mariner 74 171 -415 2266 103 3 0 chr1 127369131 127369443 -115294910 - AluSp SINE Alu 0 313 1 444 274 67 22 chr1 127369666 127369801 -115294552 + Charlie8 DNA MER1_type 125 265 -2152 280 277 160 0 chr1 127369928 127370022 -115294331 - MIR SINE MIR -36 226 118 207 254 54 83 chr1 127370545 127370750 -115293603 + L2 LINE L2 2694 2892 -422 276 258 32 97 chr1 127370966 127371090 -115293263 + L2 LINE L2 3162 3277 -36 278 294 78 0 chr1 127371165 127371267 -115293086 - MIR SINE MIR -148 114 5 423 236 146 12 chr1 127371569 127371734 -115292619 - MIR SINE MIR -6 256 70 278 258 140 11 chr1 127372401 127372494 -115291859 + MIR3 SINE MIR 82 186 -22 274 331 37 22 chr1 127372774 127372910 -115291443 + MIR SINE MIR 90 227 -35 299 229 222 52 chr1 127373064 127373212 -115291141 - MIR SINE MIR -67 141 23 622 254 86 25 chr1 127373893 127374090 -115290263 + MIR SINE MIR 37 245 -17 638 263 68 29 chr1 127374494 127374699 -115289654 + MIR SINE MIR 33 245 -17 717 139 9 0 chr1 127374700 127374808 -115289545 + FLAM_C SINE Alu 25 133 -10 180 0 0 0 chr1 127374821 127374841 -115289512 + (TG)n Simple_repeat Simple_repeat 2 21 0 2350 93 0 0 chr1 127374993 127375294 -115289059 - AluY SINE Alu -10 301 1 646 289 60 80 chr1 127375440 127375689 -115288664 + L1ME LINE L1 5295 5548 -573 2140 147 102 35 chr1 127375689 127376090 -115288263 - MSTC LTR MaLR 0 428 1 646 289 60 80 chr1 127376090 127376132 -115288221 + L1ME LINE L1 5548 5589 -532 2624 140 28 37 chr1 127376132 127376561 -115287792 + MSTA LTR MaLR 3 427 -1 646 289 60 80 chr1 127376561 127376582 -115287771 + L1ME LINE L1 5589 5609 -512 1017 174 6 17 chr1 127376582 127376754 -115287599 + FAM SINE Alu 2 171 -4 646 289 60 80 chr1 127376754 127376975 -115287378 + L1ME LINE L1 5609 5819 -302 844 158 0 63 chr1 127376985 127377143 -115287210 + AluJo SINE Alu 1 148 -164 43 20 0 0 chr1 127377167 127377217 -115287136 + AT_rich Low_complexity Low_complexity 1 50 0 25 51 0 0 chr1 127377301 127377340 -115287013 + AT_rich Low_complexity Low_complexity 1 39 0 311 324 86 35 chr1 127378156 127378357 -115285996 + MIR SINE MIR 15 226 -36 259 372 34 48 chr1 127378454 127378661 -115285692 + MIR SINE MIR 15 218 -44 232 258 15 61 chr1 127379096 127379162 -115285191 - Charlie8 DNA MER1_type -2336 81 19 208 302 58 0 chr1 127379360 127379446 -115284907 + L2 LINE L2 3220 3310 -3 668 184 41 14 chr1 127379473 127379620 -115284733 + MER96B DNA MER1_type? 24 174 -243 22 0 0 0 chr1 127379650 127379672 -115284681 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 127379812 127379832 -115284521 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 750 133 14 84 chr1 127379951 127380094 -115284259 + FLAM_C SINE Alu 1 133 0 341 275 143 15 chr1 127380737 127380888 -115283465 + MIR3 SINE MIR 14 194 -14 501 195 187 0 chr1 127381085 127381208 -115283145 + MIR SINE MIR 1 146 -116 660 219 22 7 chr1 127381210 127381347 -115283006 + MLT1A2 LTR MaLR 195 333 -41 2370 291 138 21 chr1 127381367 127381823 -115282530 - L2 LINE L2 -1758 1556 1155 2089 86 58 58 chr1 127381823 127381973 -115282380 + AluSq SINE Alu 1 150 -163 2454 76 0 3 chr1 127381973 127382274 -115282079 + AluY SINE Alu 1 300 -11 2089 86 58 58 chr1 127382274 127382436 -115281917 + AluSq SINE Alu 149 313 0 2370 291 138 21 chr1 127382436 127383118 -115281235 - L2 LINE L2 -2159 1155 285 183 277 97 65 chr1 127383169 127383324 -115281029 - L2 LINE L2 -3153 161 2 1931 86 0 0 chr1 127383379 127383623 -115280730 - AluY SINE Alu -22 289 46 316 82 0 20 chr1 127385710 127385759 -115278594 - AluJ/FLAM SINE Alu -203 99 52 526 179 0 0 chr1 127385760 127385838 -115278515 - FLAM_A SINE Alu -54 78 1 27 0 0 0 chr1 127385895 127385922 -115278431 + AT_rich Low_complexity Low_complexity 1 27 0 201 233 50 17 chr1 127386593 127386653 -115277700 + L2 LINE L2 3206 3267 -5 605 264 40 84 chr1 127387626 127387876 -115276477 - MIR SINE MIR -1 261 23 223 359 63 14 chr1 127387938 127388080 -115276273 + L2 LINE L2 2561 2709 -605 468 343 31 12 chr1 127388488 127388742 -115275611 + MIR SINE MIR 3 261 -1 1356 145 81 10 chr1 127389211 127389508 -115274845 - MER33 DNA MER1_type 0 324 7 1890 134 52 3 chr1 127389768 127390058 -115274295 - AluJb SINE Alu -8 304 1 1101 181 14 29 chr1 127390576 127390786 -115273567 + MER3 DNA MER1_type 3 209 0 3027 217 35 5 chr1 127391680 127392307 -115272046 - MER82 DNA MER2_type -6 647 2 283 214 45 34 chr1 127392407 127392496 -115271857 + L1MC/D LINE L1 5523 5612 -509 338 209 5 54 chr1 127392540 127392651 -115271702 + MIR SINE MIR 72 177 -76 329 242 67 117 chr1 127392712 127392938 -115271415 + L1MC/D LINE L1 5606 5817 -375 189 107 0 0 chr1 127393013 127393041 -115271312 + (GGAAA)n Simple_repeat Simple_repeat 1 28 0 1943 202 35 91 chr1 127393230 127393879 -115270474 - L1MC5 LINE L1 -657 7304 6692 417 287 28 0 chr1 127393880 127393988 -115270365 + MER81 DNA DNA 2 112 -2 251 333 42 55 chr1 127394020 127394123 -115270230 - L1MC4a LINE L1 -1136 6672 6569 350 228 13 0 chr1 127394123 127394202 -115270151 + MER116 DNA Mariner 1 80 0 251 333 42 55 chr1 127394202 127394500 -115269853 - L1MC4a LINE L1 -1239 6569 6276 5424 131 52 2 chr1 127394566 127395421 -115268932 - L1MC1 LINE L1 -28 6305 5409 1131 62 0 88 chr1 127395436 127395596 -115268757 - AluSq/x SINE Alu -167 146 1 8183 229 17 3 chr1 127395599 127397494 -115266859 - L1MC1 LINE L1 -750 5396 3474 1228 202 0 0 chr1 127397494 127397707 -115266646 - AluJo SINE Alu -98 214 2 265 337 0 23 chr1 127398732 127398818 -115265535 - MIR3 SINE MIR -112 96 13 639 283 86 17 chr1 127399156 127399389 -115264964 + MIR SINE MIR 8 256 -6 295 304 41 88 chr1 127399759 127399852 -115264501 + MIR SINE MIR 30 113 -149 2441 81 0 0 chr1 127399852 127400150 -115264203 - AluY SINE Alu -13 298 1 295 304 41 88 chr1 127400150 127400227 -115264126 + MIR SINE MIR 113 192 -70 23 54 0 0 chr1 127400698 127400735 -115263618 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr1 127402254 127402279 -115262074 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 227 275 0 0 chr1 127402632 127402701 -115261652 + CT-rich Low_complexity Low_complexity 1 69 0 811 227 52 60 chr1 127404912 127405163 -115259190 + MIR SINE MIR 8 256 -6 2909 7 0 0 chr1 127405205 127405515 -115258838 + AluY SINE Alu 1 310 -1 2074 117 84 36 chr1 127406074 127406432 -115257921 + THE1C LTR MaLR 1 375 0 543 223 58 43 chr1 127406432 127406620 -115257733 + MER46C DNA MER2_type 3 193 -145 1315 193 67 0 chr1 127406620 127406859 -115257494 + AluJo SINE Alu 1 255 -57 280 291 43 43 chr1 127406940 127407081 -115257272 + MER46C DNA MER2_type 187 327 -11 352 298 120 0 chr1 127407408 127407616 -115256737 + L1ME4a LINE L1 5612 5844 -277 414 175 2 47 chr1 127408169 127408269 -115256084 - MER5A DNA MER1_type -6 183 77 201 294 76 11 chr1 127408365 127408457 -115255896 + L2 LINE L2 3145 3242 -30 851 264 23 49 chr1 127408567 127408832 -115255521 + MIR SINE MIR 4 261 -1 190 366 14 0 chr1 127408991 127409062 -115255291 - MIR3 SINE MIR -24 184 113 276 30 0 0 chr1 127409155 127409188 -115255165 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr1 127410436 127410462 -115253891 + AT_rich Low_complexity Low_complexity 1 26 0 1867 154 3 0 chr1 127410470 127410755 -115253598 - AluJo SINE Alu -26 286 1 22 0 0 0 chr1 127410758 127410780 -115253573 + AT_rich Low_complexity Low_complexity 1 22 0 559 236 50 14 chr1 127411014 127411154 -115253199 - L2 LINE L2 -482 2832 2688 4798 272 135 14 chr1 127411154 127411643 -115252710 - L2 LINE L2 -788 2526 2097 2184 126 3 0 chr1 127411643 127411945 -115252408 + AluSq SINE Alu 1 303 -10 4798 272 135 14 chr1 127411945 127413204 -115251149 - L2 LINE L2 -1217 2097 567 2022 133 3 3 chr1 127413287 127413581 -115250772 + AluSx SINE Alu 1 294 -18 342 300 119 67 chr1 127414694 127415288 -115249065 - L2 LINE L2 -337 2977 2353 1581 184 27 7 chr1 127415541 127415834 -115248519 + AluJb SINE Alu 1 299 -13 1305 113 104 9 chr1 127416438 127416659 -115247694 + Tigger2a DNA MER2_type 1 242 -192 5569 107 51 39 chr1 127416663 127416970 -115247383 - L1PB1 LINE L1 -5 6146 5844 2468 66 3 13 chr1 127416970 127417275 -115247078 - AluY SINE Alu -9 302 1 5569 107 51 39 chr1 127417275 127418160 -115246193 - L1PB1 LINE L1 -307 5844 4939 1321 136 86 0 chr1 127418160 127418380 -115245973 + Tigger2a DNA MER2_type 205 443 -1 210 351 14 14 chr1 127418388 127418462 -115245891 - MIR3 SINE MIR -24 184 111 368 321 64 14 chr1 127418477 127418695 -115245658 - MIR SINE MIR -14 248 20 358 323 185 0 chr1 127418735 127418865 -115245488 - L2 LINE L2 0 3272 3119 15770 116 27 27 chr1 127419471 127421374 -115242979 - Tigger1 DNA MER2_type 0 2418 515 2331 118 0 0 chr1 127421374 127421687 -115242666 - AluSq SINE Alu 0 313 1 15770 116 27 27 chr1 127421687 127422202 -115242151 - Tigger1 DNA MER2_type -1903 515 1 762 287 90 31 chr1 127422234 127422876 -115241477 - L1MD1 LINE L1 -404 5838 5232 613 305 154 39 chr1 127422970 127423567 -115240786 - L2 LINE L2 -624 2690 2025 23 68 0 0 chr1 127423974 127424018 -115240335 + AT_rich Low_complexity Low_complexity 1 44 0 850 169 0 8 chr1 127424051 127424181 -115240172 + FLAM_C SINE Alu 1 129 -14 25 65 0 0 chr1 127424408 127424454 -115239899 + AT_rich Low_complexity Low_complexity 1 46 0 264 59 0 0 chr1 127424668 127424702 -115239651 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 200 308 46 0 chr1 127424884 127424949 -115239404 + MIR SINE MIR 124 191 -71 721 253 86 39 chr1 127425554 127425623 -115238730 - MIR SINE MIR -8 254 190 2452 78 7 0 chr1 127425623 127425929 -115238424 + AluSx SINE Alu 3 310 -2 721 253 86 39 chr1 127425929 127426092 -115238261 - MIR SINE MIR -72 190 11 216 196 0 78 chr1 127426269 127426320 -115238033 - MIR3 SINE MIR -9 199 153 589 226 83 59 chr1 127426461 127426665 -115237688 - Charlie8 DNA MER1_type -2136 281 73 316 184 194 51 chr1 127426695 127426793 -115237560 + L2 LINE L2 3201 3312 -1 233 170 38 0 chr1 127427290 127427343 -115237010 + CT-rich Low_complexity Low_complexity 1 55 0 1920 160 0 0 chr1 127427343 127427637 -115236716 - AluJb SINE Alu -18 294 1 234 91 0 0 chr1 127427817 127427850 -115236503 + (A)n Simple_repeat Simple_repeat 1 33 0 479 206 19 9 chr1 127428446 127428553 -115235800 - MIR SINE MIR -7 255 148 934 284 62 38 chr1 127428554 127428895 -115235458 - L2 LINE L2 0 3313 2965 365 237 88 9 chr1 127428997 127429111 -115235242 - MIR SINE MIR -125 137 15 1098 208 0 24 chr1 127429519 127429691 -115234662 + MER33 DNA MER1_type 1 167 -2418 524 74 0 25 chr1 127429691 127429772 -115234581 - MADE1 DNA Mariner -1 79 1 1098 208 0 24 chr1 127429772 127429854 -115234499 + MER33 DNA MER1_type 167 249 -75 181 308 159 9 chr1 127430263 127430370 -115233983 + L3 LINE CR1 196 318 -1259 232 234 120 49 chr1 127430889 127431073 -115233280 + L1MC5 LINE L1 7486 7682 -279 21 36 0 0 chr1 127431122 127431150 -115233203 + AT_rich Low_complexity Low_complexity 1 28 0 450 332 123 8 chr1 127431367 127431602 -115232751 + MIR SINE MIR 1 262 0 1362 151 86 48 chr1 127431993 127432171 -115232182 - AluJb SINE Alu -10 302 132 2417 123 25 6 chr1 127432171 127432528 -115231825 - THE1B LTR MaLR 0 364 1 10698 98 32 34 chr1 127432528 127434111 -115230242 - THE1B-int LTR MaLR 0 1580 1 2195 148 28 11 chr1 127434111 127434469 -115229884 - THE1B LTR MaLR 0 364 1 1362 151 86 48 chr1 127434469 127434579 -115229774 - AluJb SINE Alu -179 133 1 743 273 189 25 chr1 127434639 127435148 -115229205 + L2 LINE L2 2485 3067 -246 613 267 21 16 chr1 127435160 127435351 -115229002 + L1MC4 LINE L1 5757 5948 -1860 2038 124 13 0 chr1 127435373 127435680 -115228673 - AluY SINE Alu 0 311 1 260 186 17 17 chr1 127435738 127435797 -115228556 - Tigger5 DNA MER2_type -14 2309 2251 * 311 154 0 19 chr1 127435767 127435819 -115228534 - Tigger5 DNA MER2_type -2269 54 4 2018 225 140 140 chr1 127435823 127436530 -115227823 + L1MC4 LINE L1 6347 7053 -989 1717 173 3 7 chr1 127436530 127436819 -115227534 + AluJb SINE Alu 11 298 -14 2018 225 140 140 chr1 127436819 127437017 -115227336 + L1MC4 LINE L1 7053 7250 -792 1787 167 0 7 chr1 127437017 127437317 -115227036 + AluJb SINE Alu 1 298 -14 2018 225 140 140 chr1 127437317 127438106 -115226247 + L1MC4 LINE L1 7249 8042 0 550 267 76 58 chr1 127438131 127438356 -115225997 + L2 LINE L2 3083 3311 -2 441 264 26 124 chr1 127438353 127438546 -115225807 - MIR SINE MIR -76 186 13 * 1831 155 3 0 chr1 127439262 127439565 -115224788 - AluJb SINE Alu -8 304 1 187 269 97 21 chr1 127439852 127439945 -115224408 + MIR SINE MIR 135 234 -28 22 35 0 0 chr1 127440278 127440307 -115224046 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 127440524 127440547 -115223806 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 127440746 127440767 -115223586 + GC_rich Low_complexity Low_complexity 1 21 0 196 219 0 0 chr1 127442108 127442149 -115222204 - L2 LINE L2 -557 2757 2717 * 363 279 295 0 chr1 127442145 127442335 -115222018 - MIR SINE MIR -1 261 16 385 231 127 15 chr1 127443782 127443916 -115220437 + MER91B DNA MER1_type 27 175 -15 186 333 152 7 chr1 127447786 127447924 -115216429 + MIR3 SINE MIR 10 167 -41 340 136 17 0 chr1 127448137 127448196 -115216157 + MER116 DNA Mariner 14 73 -7 303 93 0 0 chr1 127449327 127449370 -115214983 + (TCC)n Simple_repeat Simple_repeat 3 45 0 387 281 179 34 chr1 127449597 127449860 -115214493 + L1MC4a LINE L1 5728 6028 -1780 1319 247 98 26 chr1 127449907 127450045 -115214308 + MLT1C LTR MaLR 8 135 -332 1478 207 47 34 chr1 127450045 127450426 -115213927 + MLT1B LTR MaLR 1 386 -4 1319 247 98 26 chr1 127450426 127450716 -115213637 + MLT1C LTR MaLR 135 467 0 225 0 0 0 chr1 127450990 127451015 -115213338 + (T)n Simple_repeat Simple_repeat 1 25 0 493 288 85 27 chr1 127452281 127452576 -115211777 + L1ME4a LINE L1 5781 6092 -29 2037 99 0 36 chr1 127453574 127453876 -115210477 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr1 127454213 127454241 -115210112 + AT_rich Low_complexity Low_complexity 1 28 0 1720 97 122 14 chr1 127455309 127455588 -115208765 + AluSg SINE Alu 2 310 0 26 30 0 0 chr1 127455902 127455935 -115208418 + AT_rich Low_complexity Low_complexity 1 33 0 221 278 0 28 chr1 127456116 127456188 -115208165 + GA-rich Low_complexity Low_complexity 4 73 0 196 356 0 22 chr1 127456676 127456766 -115207587 + L3 LINE CR1 998 1085 -492 241 207 49 73 chr1 127456793 127456875 -115207478 - L2 LINE L2 -63 3250 3171 308 327 238 5 chr1 127456970 127457172 -115207181 - L2 LINE L2 -138 3175 2927 417 287 242 24 chr1 127457190 127457479 -115206874 - L2 LINE L2 0 3272 2921 590 252 246 31 chr1 127457514 127457835 -115206518 + L3 LINE CR1 1099 1488 -89 319 284 159 40 chr1 127458964 127459285 -115205068 + L2 LINE L2 2604 2962 -352 295 355 33 0 chr1 127459458 127459579 -115204774 - L2 LINE L2 -1 3271 3147 275 308 13 13 chr1 127459585 127459663 -115204690 + L2 LINE L2 3194 3271 -1 181 238 24 0 chr1 127461005 127461047 -115203306 + L3b LINE CR1 1186 1228 -355 382 326 30 15 chr1 127461525 127461660 -115202693 + MIR SINE MIR 123 259 -3 626 196 223 0 chr1 127461750 127461898 -115202455 + MER5A DNA MER1_type 9 189 0 521 250 179 0 chr1 127462795 127462951 -115201402 + MER5A DNA MER1_type 3 186 -3 694 243 138 22 chr1 127463570 127464092 -115200261 + MER20B DNA MER1_type 148 764 -19 202 228 88 18 chr1 127464132 127464189 -115200164 - L2 LINE L2 -2 3270 3210 * 786 180 219 6 chr1 127464161 127464344 -115200009 - MIR SINE MIR -29 233 12 668 236 127 38 chr1 127466365 127466602 -115197751 + MIR SINE MIR 5 262 0 657 299 43 10 chr1 127466756 127466963 -115197390 + MIR SINE MIR 30 243 -19 560 266 22 76 chr1 127467439 127467669 -115196684 + MIR SINE MIR 34 252 -10 326 232 7 76 chr1 127468690 127468813 -115195540 + MIR SINE MIR 1 118 -90 240 250 45 34 chr1 127468885 127468973 -115195380 + MIR SINE MIR 104 192 -70 723 288 162 23 chr1 127468991 127469043 -115195310 + L1MC4 LINE L1 7524 7567 -475 366 91 0 0 chr1 127469043 127469098 -115195255 + (CA)n Simple_repeat Simple_repeat 2 56 0 723 288 162 23 chr1 127469098 127469472 -115194881 + L1MC4 LINE L1 7567 8009 -33 693 315 13 25 chr1 127470747 127470985 -115193368 - MIR SINE MIR 0 262 28 616 227 238 0 chr1 127471010 127471195 -115193158 + MIR SINE MIR 3 231 -31 28 61 0 0 chr1 127471204 127471253 -115193100 + AT_rich Low_complexity Low_complexity 1 49 0 328 293 103 23 chr1 127472635 127472809 -115191544 + MIR SINE MIR 63 250 -12 313 312 65 40 chr1 127474460 127474659 -115189694 + MIR SINE MIR 58 261 -1 441 252 8 31 chr1 127475230 127475357 -115188996 + MIR SINE MIR 72 195 -67 216 313 0 0 chr1 127476459 127476507 -115187846 - L2 LINE L2 -16 3256 3209 27 29 0 0 chr1 127476685 127476719 -115187634 + AT_rich Low_complexity Low_complexity 1 34 0 841 148 112 12 chr1 127478902 127479071 -115185282 - AluJb SINE Alu 0 312 127 184 378 0 0 chr1 127481251 127481333 -115183020 + L2 LINE L2 2873 2954 -318 265 315 18 36 chr1 127482094 127482205 -115182148 + MER5A DNA MER1_type 34 142 -47 238 326 33 22 chr1 127482806 127482898 -115181455 + MIR SINE MIR 120 212 -50 21 36 0 0 chr1 127482925 127482953 -115181400 + AT_rich Low_complexity Low_complexity 1 28 0 340 325 26 0 chr1 127483128 127483242 -115181111 - Charlie8 DNA MER1_type -2295 122 6 2160 93 3 0 chr1 127484662 127484941 -115179412 + AluSp SINE Alu 1 283 -30 273 57 0 0 chr1 127484941 127484976 -115179377 + (CA)n Simple_repeat Simple_repeat 1 35 0 2160 93 3 0 chr1 127484976 127484987 -115179366 + AluSp SINE Alu 283 292 -21 21 0 0 0 chr1 127486272 127486293 -115178060 + AT_rich Low_complexity Low_complexity 1 21 0 311 307 0 59 chr1 127487108 127487209 -115177144 + MIR SINE MIR 50 144 -64 * 939 243 62 21 chr1 127487199 127487442 -115176911 + MIR SINE MIR 5 257 -5 384 234 39 0 chr1 127488060 127488137 -115176216 + Tigger3(Golem) DNA MER2_type 1 80 -2949 650 200 0 0 chr1 127488264 127488374 -115175979 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 496 208 134 54 chr1 127488583 127488732 -115175621 - MER5B DNA MER1_type -3 175 15 353 289 39 0 chr1 127489583 127489687 -115174666 + L1ME4a LINE L1 6013 6120 -1 1097 230 98 105 chr1 127489755 127490173 -115174180 + MER21B LTR ERV1 15 429 -434 670 159 99 45 chr1 127490171 127490409 -115173944 + MLT1F1 LTR MaLR 78 378 -164 * 1722 157 0 20 chr1 127490414 127490603 -115173750 - AluJo SINE Alu -16 296 114 2657 137 34 5 chr1 127490603 127491019 -115173334 + MSTA LTR MaLR 1 428 0 1722 157 0 20 chr1 127491019 127491122 -115173231 - AluJo SINE Alu -198 114 10 792 202 12 18 chr1 127491136 127491304 -115173049 + MLT1F1 LTR MaLR 398 564 -3 235 268 14 14 chr1 127491363 127491434 -115172919 + Charlie4 DNA MER1_type 1885 1955 -6 349 268 158 40 chr1 127492088 127492316 -115172037 + L1ME4a LINE L1 5867 6121 0 405 277 66 0 chr1 127492339 127492476 -115171877 - MIR SINE MIR -36 226 81 505 259 38 32 chr1 127492888 127493046 -115171307 - MIR SINE MIR -4 258 100 1691 103 58 0 chr1 127493073 127493315 -115171038 + AluSx SINE Alu 1 256 -56 2082 120 0 3 chr1 127493473 127493774 -115170579 + AluSx SINE Alu 1 300 -12 775 120 0 0 chr1 127493781 127493889 -115170464 + AluJb SINE Alu 191 298 -14 790 142 129 0 chr1 127494012 127494167 -115170186 + MIR SINE MIR 78 252 -10 1079 210 179 83 chr1 127494240 127494782 -115169571 + MLT1G LTR MaLR 2 590 0 260 229 139 41 chr1 127495245 127495367 -115168986 - L2 LINE L2 -596 2718 2585 21 36 0 0 chr1 127495785 127495813 -115168540 + AT_rich Low_complexity Low_complexity 1 28 0 296 226 96 35 chr1 127496076 127496191 -115168162 - L1MC/D LINE L1 -352 5822 5708 313 353 83 47 chr1 127498802 127499080 -115165273 + L1ME4a LINE L1 5774 6061 -60 329 157 60 60 chr1 127500107 127500190 -115164163 - MIR SINE MIR -74 188 106 264 304 194 38 chr1 127500247 127500510 -115163843 - L2 LINE L2 -1 3271 2968 2471 49 3 0 chr1 127500706 127501010 -115163343 + AluY SINE Alu 1 305 -6 23 0 0 0 chr1 127503079 127503102 -115161251 + AT_rich Low_complexity Low_complexity 1 23 0 219 283 0 19 chr1 127503114 127503167 -115161186 + MIR3 SINE MIR 155 206 -2 682 164 0 0 chr1 127503264 127503380 -115160973 + LTR9B LTR ERV1 445 560 -84 869 245 98 91 chr1 127504288 127504818 -115159535 + MLT1G LTR MaLR 1 555 0 275 360 0 0 chr1 127505452 127505552 -115158801 + L2 LINE L2 2950 3049 -223 208 219 0 0 chr1 127505645 127505686 -115158667 + L2 LINE L2 3272 3312 -1 344 197 26 13 chr1 127506158 127506234 -115158119 + L2 LINE L2 3236 3312 -1 248 241 105 62 chr1 127506259 127506421 -115157932 - MIR3 SINE MIR -38 170 2 212 233 0 0 chr1 127506910 127506953 -115157400 - L3 LINE CR1 -187 1390 1348 233 350 33 33 chr1 127506985 127507105 -115157248 - L2 LINE L2 -2 3311 3192 391 315 207 31 chr1 127507136 127507590 -115156763 - L3 LINE CR1 -448 1129 596 225 204 0 37 chr1 127508346 127508400 -115155953 + GA-rich Low_complexity Low_complexity 1 52 0 462 257 59 0 chr1 127508437 127508573 -115155780 - MIR SINE MIR -34 228 85 1774 119 11 22 chr1 127509456 127509734 -115154619 + AluSq SINE Alu 37 311 -2 363 279 96 48 chr1 127510171 127510422 -115153931 - L1ME3 LINE L1 -215 5947 5685 280 343 7 20 chr1 127510460 127510606 -115153747 - L1ME3 LINE L1 -586 5580 5437 556 217 40 13 chr1 127510711 127510863 -115153490 + L1MC5 LINE L1 7758 7913 -48 2054 124 7 0 chr1 127510888 127511242 -115153111 + AluSx SINE Alu 5 360 0 789 141 0 177 chr1 127511515 127511621 -115152732 - FRAM SINE Alu -136 166 109 189 0 0 0 chr1 127511621 127511642 -115152711 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 789 141 0 177 chr1 127511642 127511733 -115152620 - FRAM SINE Alu -193 109 4 309 248 168 32 chr1 127512840 127512965 -115151388 - MIR3 SINE MIR -64 144 3 319 373 44 0 chr1 127513420 127513578 -115150775 - MIR SINE MIR -78 184 20 2781 207 55 16 chr1 127514576 127515194 -115149159 + L1ME1 LINE L1 5525 6166 0 187 365 54 14 chr1 127515248 127515396 -115148957 + MIR SINE MIR 80 233 -29 589 195 124 24 chr1 127517146 127517315 -115147038 - MIR SINE MIR 0 262 77 2227 97 0 0 chr1 127517490 127517788 -115146565 + AluSx SINE Alu 1 298 -14 314 225 14 14 chr1 127518931 127519002 -115145351 - MLT1J2 LTR MaLR -309 141 71 410 193 60 0 chr1 127520069 127520152 -115144201 - MLT1L LTR MaLR -338 277 190 288 328 8 82 chr1 127521263 127521297 -115143056 - L2 LINE L2 0 3272 3237 337 227 67 0 chr1 127521297 127521372 -115142981 + MER116 DNA Mariner 1 80 0 288 328 8 82 chr1 127521372 127521471 -115142882 - L2 LINE L2 -35 3237 3149 212 355 167 7 chr1 127521522 127521660 -115142693 + L2 LINE L2 3150 3309 -4 189 132 211 0 chr1 127524860 127524898 -115139455 + L2 LINE L2 3222 3267 -5 238 304 43 0 chr1 127525778 127525893 -115138460 + L1ME4a LINE L1 5881 6000 -121 2068 67 46 3 chr1 127525959 127526241 -115138112 - AluY SINE Alu -1 310 17 2100 86 3 14 chr1 127526310 127526600 -115137753 + AluSx SINE Alu 1 287 -25 295 295 32 21 chr1 127526791 127526886 -115137467 + L3b LINE CR1 1420 1515 -68 1966 109 42 0 chr1 127527692 127527716 -115136637 - AluSq SINE Alu -17 296 274 223 62 0 0 chr1 127527716 127527748 -115136605 + (TTTTG)n Simple_repeat Simple_repeat 4 175 0 1966 109 42 0 chr1 127527748 127528007 -115136346 - AluSq SINE Alu -39 274 1 1519 149 6 93 chr1 127529266 127529587 -115134766 - AluJo SINE Alu -19 293 1 738 162 8 0 chr1 127530016 127530133 -115134220 - FLAM_C SINE Alu -15 118 1 611 133 0 62 chr1 127530133 127530150 -115134203 + Charlie4 DNA MER1_type 1855 1871 -90 1677 108 166 0 chr1 127530150 127530409 -115133944 - AluSx SINE Alu 0 302 1 611 133 0 62 chr1 127530409 127530504 -115133849 + Charlie4 DNA MER1_type 1871 1960 -1 273 219 0 104 chr1 127530653 127530678 -115133675 - L2 LINE L2 -3 3269 3243 2088 112 0 7 chr1 127530678 127530973 -115133380 + AluSg SINE Alu 1 293 -17 273 219 0 104 chr1 127530973 127531043 -115133310 - L2 LINE L2 -29 3243 3184 269 130 65 0 chr1 127531077 127531123 -115133230 + MIR SINE MIR 200 248 -14 352 250 0 33 chr1 127531272 127531364 -115132989 + MIR SINE MIR 1 89 -173 1280 230 95 37 chr1 127531364 127531712 -115132641 + MLT1J LTR MaLR 1 368 -143 2203 95 3 0 chr1 127531744 127532038 -115132315 - AluSx SINE Alu -17 295 1 491 239 0 18 chr1 127532038 127532139 -115132214 + MIR SINE MIR 91 191 -71 203 241 161 23 chr1 127532281 127532368 -115131985 - L3 LINE CR1 -12 1565 1467 609 232 40 34 chr1 127534501 127534678 -115129675 - MER5B DNA MER1_type 0 178 1 228 322 0 2 chr1 127534811 127534872 -115129481 - MIR SINE MIR -135 73 14 290 189 0 74 chr1 127537183 127537305 -115127048 + C-rich Low_complexity Low_complexity 3 115 0 28 0 0 0 chr1 127537495 127537523 -115126830 + GC_rich Low_complexity Low_complexity 1 28 0 956 227 61 4 chr1 127537825 127538054 -115126299 + MIR SINE MIR 21 262 0 221 317 154 14 chr1 127538400 127538621 -115125732 - L2 LINE L2 -337 2977 2726 1898 152 0 0 chr1 127538641 127538944 -115125409 - AluSg SINE Alu -7 303 1 822 269 146 47 chr1 127539027 127539178 -115125175 - L2 LINE L2 0 3313 3178 1901 121 0 0 chr1 127539178 127539451 -115124902 + AluSx SINE Alu 1 273 -39 191 36 36 0 chr1 127539460 127539488 -115124865 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 822 269 146 47 chr1 127539488 127540045 -115124308 - L2 LINE L2 -142 3171 2461 1895 123 0 61 chr1 127540504 127540830 -115123523 + AluSp SINE Alu 1 306 -7 733 130 8 8 chr1 127540830 127540961 -115123392 + (GGAA)n Simple_repeat Simple_repeat 1 131 0 211 40 0 0 chr1 127540961 127540986 -115123367 + (GA)n Simple_repeat Simple_repeat 1 25 0 338 227 120 47 chr1 127541213 127541363 -115122990 - Charlie8 DNA MER1_type -2138 279 119 192 77 0 0 chr1 127541478 127541504 -115122849 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2322 79 0 13 chr1 127541966 127542270 -115122083 - AluSx SINE Alu -12 300 1 189 0 0 0 chr1 127542292 127542313 -115122040 + (GA)n Simple_repeat Simple_repeat 2 22 0 766 270 33 29 chr1 127542554 127542795 -115121558 + MIR SINE MIR 11 252 -10 275 192 211 0 chr1 127542826 127542928 -115121425 + MIR SINE MIR 19 150 -62 2287 92 0 3 chr1 127542928 127543231 -115121122 + AluSq SINE Alu 1 302 -11 232 211 70 28 chr1 127544095 127544166 -115120187 + 7SK RNA RNA 19 92 -101 305 221 103 0 chr1 127544475 127544543 -115119810 - L2 LINE L2 -46 3267 3193 * 675 238 0 12 chr1 127544535 127544695 -115119658 + L2 LINE L2 3152 3309 -4 389 227 17 34 chr1 127544694 127544813 -115119540 - L2 LINE L2 -113 3200 3084 * 951 173 17 0 chr1 127544813 127544986 -115119367 - FRAM SINE Alu -7 169 1 353 280 75 0 chr1 127544986 127545093 -115119260 - L2 LINE L2 -232 3081 2967 2221 95 0 7 chr1 127545106 127545411 -115118942 - AluSg SINE Alu -7 303 1 245 301 39 39 chr1 127545790 127545893 -115118460 + L1MEd LINE L1 521 623 -5496 1319 266 116 24 chr1 127546028 127546561 -115117792 - L2 LINE L2 -257 3056 2475 766 326 90 75 chr1 127546572 127547613 -115116740 + L2 LINE L2 2158 3245 -27 1666 148 3 50 chr1 127547613 127547930 -115116423 - AluJo SINE Alu -10 302 1 766 326 90 75 chr1 127547930 127547958 -115116395 + L2 LINE L2 3245 3271 -1 310 299 128 49 chr1 127548440 127548728 -115115625 + HAL1 LINE L1 988 1298 -1209 320 303 0 11 chr1 127549500 127549589 -115114764 + CT-rich Low_complexity Low_complexity 1 88 0 1132 193 115 0 chr1 127549753 127549997 -115114356 + AluJo SINE Alu 1 272 -40 242 229 62 0 chr1 127549997 127550045 -115114308 + MIR SINE MIR 118 168 -94 187 315 18 45 chr1 127550048 127550159 -115114194 + MIR SINE MIR 142 249 -13 * 3066 228 52 166 chr1 127550157 127551323 -115113030 - L2 LINE L2 -23 3290 2424 293 257 0 0 chr1 127551323 127551393 -115112960 + MLT1H LTR MaLR 387 456 -93 3066 228 52 166 chr1 127551393 127552400 -115111953 - L2 LINE L2 -889 2424 1304 748 275 141 16 chr1 127552531 127552984 -115111369 + MLT1L LTR MaLR 3 537 -78 2274 57 40 3 chr1 127552989 127553289 -115111064 + AluY SINE Alu 1 311 0 22 56 0 0 chr1 127553289 127553325 -115111028 + AT_rich Low_complexity Low_complexity 1 36 0 2165 125 0 0 chr1 127553730 127554041 -115110312 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr1 127554256 127554276 -115110077 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1636 153 10 33 chr1 127554668 127554975 -115109378 - AluJo SINE Alu -10 302 3 2088 104 0 0 chr1 127555141 127555421 -115108932 + AluSg SINE Alu 1 280 -30 440 292 127 30 chr1 127555712 127555948 -115108405 - L2 LINE L2 0 3272 3014 749 148 0 25 chr1 127555948 127556070 -115108283 - FRAM SINE Alu -20 156 38 641 176 162 86 chr1 127556564 127556786 -115107567 + ORSL DNA AcHobo 1 239 -36 330 26 0 0 chr1 127557282 127557321 -115107032 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 265 0 0 chr1 127557469 127557518 -115106835 + GA-rich Low_complexity Low_complexity 2 50 0 193 154 26 0 chr1 127557532 127557571 -115106782 + L2 LINE L2 3231 3270 -2 2038 120 0 10 chr1 127557655 127557954 -115106399 + AluSx SINE Alu 1 296 -16 2208 102 0 0 chr1 127557954 127558258 -115106095 + AluSx SINE Alu 1 304 -8 621 249 111 103 chr1 127558275 127558505 -115105848 - L1MC4a LINE L1 -255 7787 7560 1554 143 109 0 chr1 127558505 127558770 -115105583 - AluJo SINE Alu -14 298 5 621 249 111 103 chr1 127558770 127559024 -115105329 - L1MC4a LINE L1 -482 7560 7219 404 216 81 9 chr1 127559557 127559668 -115104685 + MLT1L LTR MaLR 392 614 -1 340 320 16 8 chr1 127559671 127559793 -115104560 - MIR SINE MIR -56 152 30 351 96 0 0 chr1 127560600 127560652 -115103701 + (TG)n Simple_repeat Simple_repeat 2 53 0 703 273 56 23 chr1 127561589 127561805 -115102548 + MIR SINE MIR 14 236 -26 410 300 51 94 chr1 127561812 127562185 -115102168 + L2 LINE L2 2916 3272 0 990 259 98 39 chr1 127562318 127562759 -115101594 - MLT1L LTR MaLR -7 608 142 399 234 106 0 chr1 127562879 127562973 -115101380 - L2 LINE L2 0 3313 3210 476 291 131 0 chr1 127563318 127563562 -115100791 - L2 LINE L2 -120 3193 2918 708 229 77 22 chr1 127565111 127565294 -115099059 - MIR3 SINE MIR -13 195 3 2119 107 7 0 chr1 127565511 127565809 -115098544 - AluSp SINE Alu -13 300 1 2321 72 0 20 chr1 127565970 127566275 -115098078 + AluY SINE Alu 1 299 -12 441 66 0 0 chr1 127567029 127567090 -115097263 + (TG)n Simple_repeat Simple_repeat 2 62 0 324 214 117 121 chr1 127567713 127567919 -115096434 - MLT1K LTR MaLR 0 588 384 252 301 0 62 chr1 127567994 127568107 -115096246 - MLT1K LTR MaLR -295 293 188 305 277 187 32 chr1 127568626 127568781 -115095572 - MER5A DNA MER1_type -2 187 9 715 197 33 0 chr1 127569410 127569532 -115094821 - MER58B DNA MER1_type 0 341 216 4401 234 34 39 chr1 127569533 127570072 -115094281 - L1MEc LINE L1 -1381 4834 4294 781 173 0 43 chr1 127570072 127570211 -115094142 + FLAM_C SINE Alu 1 133 0 4401 234 34 39 chr1 127570211 127571225 -115093128 - L1MEc LINE L1 -1921 4294 3289 1180 231 70 101 chr1 127571388 127571593 -115092760 - L1MEc LINE L1 -3568 2647 2437 2606 48 0 0 chr1 127571593 127571904 -115092449 - AluY SINE Alu 0 311 1 1180 231 70 101 chr1 127571904 127572373 -115091980 - L1MEc LINE L1 -3778 2437 2039 * 1859 291 49 47 chr1 127572355 127572481 -115091872 - L1MEc LINE L1 -5255 1141 1017 2142 116 3 3 chr1 127572481 127572792 -115091561 - AluSq SINE Alu -2 311 1 1859 291 49 47 chr1 127572792 127573692 -115090661 - L1MEc LINE L1 -5379 1017 113 4042 233 66 9 chr1 127574236 127575253 -115089100 + MER69B DNA AcHobo 2 1094 -1432 2120 87 21 0 chr1 127575253 127575541 -115088812 + AluSx SINE Alu 1 294 -18 4042 233 66 9 chr1 127575541 127575682 -115088671 + MER69B DNA AcHobo 1094 1226 0 1208 189 14 14 chr1 127575729 127575941 -115088412 + THE1C LTR MaLR 1 212 -163 2181 98 3 0 chr1 127576841 127577137 -115087216 - AluSp SINE Alu -16 297 1 1844 139 20 7 chr1 127578798 127579093 -115085260 + AluSx SINE Alu 1 299 -13 252 317 16 73 chr1 127579497 127579620 -115084733 + L2 LINE L2 3184 3299 -14 649 198 9 0 chr1 127579665 127579781 -115084572 + FLAM_C SINE Alu 2 118 -25 273 243 114 0 chr1 127580094 127580164 -115084189 - MER91A DNA MER1_type -22 174 97 1992 191 20 121 chr1 127580969 127581525 -115082828 + MLT2B3 LTR ERVL 1 500 -54 393 77 0 0 chr1 127581555 127581607 -115082746 - MLT2A2 LTR ERVL -3 450 399 318 132 0 0 chr1 127581636 127581689 -115082664 + MLT2A2 LTR ERVL 401 453 0 584 359 61 23 chr1 127581838 127582108 -115082245 + L3 LINE CR1 37 324 -1253 1273 211 112 95 chr1 127582108 127582709 -115081644 - LTR36 LTR ERV1 0 611 1 584 359 61 23 chr1 127582709 127582783 -115081570 + L3 LINE CR1 324 394 -1183 253 268 14 14 chr1 127582890 127582961 -115081392 + Charlie8 DNA MER1_type 47 117 -2300 563 283 85 25 chr1 127582998 127583281 -115081072 + MLT1I LTR MaLR 41 340 -69 2074 88 0 11 chr1 127584632 127584915 -115079438 - AluSg SINE Alu -30 280 1 5616 164 30 13 chr1 127584916 127585958 -115078395 - L1 LINE L1 -1774 4372 3314 5334 148 42 25 chr1 127585963 127587048 -115077305 + L1MA7 LINE L1 5151 6252 -39 211 378 58 6 chr1 127587153 127587309 -115077044 + L2 LINE L2 2779 2942 -372 9097 13 0 0 chr1 127587607 127589414 -115074939 + L1HS LINE L1 4349 6155 0 334 393 18 11 chr1 127590060 127590340 -115074013 + L2 LINE L2 2636 2917 -397 932 275 52 60 chr1 127590768 127591153 -115073200 - L2 LINE L2 -1 3312 2931 425 324 81 32 chr1 127591153 127591400 -115072953 - MLT1J2 LTR MaLR 0 450 192 785 247 47 8 chr1 127591626 127591881 -115072472 - L2 LINE L2 -471 2843 2579 947 202 73 46 chr1 127591963 127592181 -115072172 - MER58A DNA MER1_type 0 224 1 1063 206 5 28 chr1 127593004 127593218 -115071135 + MER3 DNA MER1_type 1 209 0 568 284 82 26 chr1 127593222 127593454 -115070899 + MIR SINE MIR 8 252 -10 618 237 65 76 chr1 127593878 127594093 -115070260 + MLT1J LTR MaLR 230 443 -68 1744 166 108 19 chr1 127594093 127594455 -115069898 - MSTD LTR MaLR 0 396 3 618 237 65 76 chr1 127594455 127594501 -115069852 + MLT1J LTR MaLR 443 488 -23 862 174 5 54 chr1 127594805 127594989 -115069364 + FRAM SINE Alu 2 176 0 419 274 61 92 chr1 127595015 127595169 -115069184 + LTR67 LTR ERVL 9 166 -391 2173 95 7 3 chr1 127595169 127595474 -115068879 + AluSq SINE Alu 2 307 -6 419 274 61 92 chr1 127595474 127595827 -115068526 + LTR67 LTR ERVL 166 557 0 276 234 0 3 chr1 127596026 127596099 -115068254 - MIR SINE MIR -62 146 88 407 285 31 0 chr1 127596624 127596754 -115067599 - MIR SINE MIR -66 196 63 290 149 0 0 chr1 127597452 127597499 -115066854 + L3 LINE CR1 1054 1100 -477 632 313 40 31 chr1 127597499 127597726 -115066627 + L3 LINE CR1 1279 1507 -70 201 343 166 15 chr1 127598104 127598495 -115065858 + L2 LINE L2 2384 2833 -481 255 305 94 67 chr1 127598768 127598998 -115065355 + L2 LINE L2 2911 3152 -120 294 29 0 0 chr1 127598998 127599033 -115065320 + (TG)n Simple_repeat Simple_repeat 2 36 0 255 305 94 67 chr1 127599033 127599100 -115065253 + L2 LINE L2 3152 3216 -56 283 174 43 14 chr1 127599115 127599184 -115065169 - MLT1K LTR MaLR 0 588 518 2170 103 0 3 chr1 127600099 127600399 -115063954 + AluSx SINE Alu 1 299 -13 837 292 56 56 chr1 127601219 127601596 -115062757 + MLT1K LTR MaLR 128 504 -84 1137 257 195 5 chr1 127601598 127602179 -115062174 + L2 LINE L2 2481 3156 -157 1635 231 64 18 chr1 127602181 127602632 -115061721 - MER49 LTR ERV1 0 923 452 1161 189 10 10 chr1 127602619 127602820 -115061533 - MER72 LTR ERV1 -521 201 1 * 341 266 65 71 chr1 127602825 127602979 -115061374 + L2 LINE L2 3161 3313 0 242 0 61 0 chr1 127604219 127604252 -115060101 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 663 187 0 0 chr1 127604252 127604359 -115059994 - FLAM_C SINE Alu -22 121 15 517 248 176 101 chr1 127604369 127604426 -115059927 + MLT1G LTR MaLR 2 53 -537 2333 67 3 0 chr1 127604426 127604725 -115059628 + AluY SINE Alu 1 300 -11 517 248 176 101 chr1 127604725 127605200 -115059153 + MLT1G LTR MaLR 53 574 -16 426 279 28 33 chr1 127605419 127605636 -115058717 + L2 LINE L2 2792 3006 -307 1354 147 18 15 chr1 127605651 127605921 -115058432 + MER1B DNA MER1_type 1 339 0 598 308 89 41 chr1 127605922 127606214 -115058139 + L2 LINE L2 3008 3313 0 223 265 162 56 chr1 127606371 127606711 -115057642 + L2 LINE L2 2840 3215 -57 879 125 8 0 chr1 127607517 127607645 -115056708 - FLAM_C SINE Alu -3 130 2 279 253 81 23 chr1 127607651 127607738 -115056615 - MIR SINE MIR -116 146 55 493 357 44 0 chr1 127608376 127608558 -115055795 - MIR SINE MIR -6 256 67 351 273 0 11 chr1 127610805 127610893 -115053460 + CT-rich Low_complexity Low_complexity 2 88 0 2116 112 0 3 chr1 127612361 127612656 -115051697 + AluSg SINE Alu 1 294 -16 1643 192 35 6 chr1 127613174 127613488 -115050865 + LTR10B LTR ERV1 246 547 0 6735 227 47 28 chr1 127613488 127615934 -115048419 + HERVI LTR ERV1 2 2190 -4459 3824 236 18 28 chr1 127615931 127616876 -115047477 + MER34C-int LTR ERV1 4624 5559 -1090 * 4692 230 6 8 chr1 127616883 127617832 -115046521 + MER34C-int LTR ERV1 5703 6649 0 1741 179 21 3 chr1 127617992 127618277 -115046076 + LTR10B LTR ERV1 258 547 0 1536 204 47 92 chr1 127618837 127618863 -115045490 + MER34C LTR ERV1 33 59 -526 2897 152 43 4 chr1 127618863 127619331 -115045022 - MER66B LTR ERV1 0 486 1 1536 204 47 92 chr1 127619331 127619883 -115044470 + MER34C LTR ERV1 59 585 0 504 319 72 0 chr1 127619902 127620206 -115044147 - L1ME LINE L1 -319 5802 5477 335 281 76 76 chr1 127620274 127620380 -115043973 - L1ME LINE L1 -786 5360 5255 1893 133 0 32 chr1 127620380 127620688 -115043665 + AluJb SINE Alu 1 298 -14 335 281 76 76 chr1 127620688 127620844 -115043509 - L1ME LINE L1 -890 5256 5098 2797 131 38 2 chr1 127621213 127621662 -115042691 + MER4C LTR ERV1 1 465 0 626 294 123 35 chr1 127621855 127622403 -115041950 - L1ME4a LINE L1 -209 5912 5318 359 291 80 89 chr1 127622416 127622669 -115041684 - L1ME4a LINE L1 -853 5293 5042 1961 134 3 3 chr1 127622669 127622976 -115041377 - AluSx SINE Alu -5 307 1 359 291 80 89 chr1 127622976 127623049 -115041304 - L1ME4a LINE L1 -1104 5042 4970 205 328 0 0 chr1 127623339 127623406 -115040947 + T-rich Low_complexity Low_complexity 3 69 0 225 327 40 20 chr1 127625220 127625321 -115039032 - L2 LINE L2 -632 2682 2580 * 422 280 0 0 chr1 127625306 127625406 -115038947 + MER5B DNA MER1_type 79 178 0 476 274 67 18 chr1 127626067 127626231 -115038122 - MIR SINE MIR -50 212 41 569 150 143 27 chr1 127626259 127626406 -115037947 - L1MB8 LINE L1 0 6178 6015 2255 100 3 0 chr1 127626669 127626978 -115037375 - AluSx SINE Alu -2 310 1 28 48 0 0 chr1 127627393 127627435 -115036918 + AT_rich Low_complexity Low_complexity 1 42 0 216 0 0 0 chr1 127627435 127627459 -115036894 + (GA)n Simple_repeat Simple_repeat 2 25 0 1695 157 7 0 chr1 127627470 127627750 -115036603 - AluSx SINE Alu -30 282 1 384 283 17 17 chr1 127627752 127627872 -115036481 + L1ME4a LINE L1 5930 6049 -72 476 274 67 18 chr1 127628446 127628610 -115035743 - MIR SINE MIR -50 212 41 456 144 117 27 chr1 127628637 127628748 -115035605 - L1MB8 LINE L1 0 6178 6058 269 333 90 40 chr1 127629647 127629824 -115034529 + MIR SINE MIR 27 212 -50 189 0 0 0 chr1 127629928 127629949 -115034404 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 271 193 193 46 chr1 127630571 127630680 -115033673 - MIR3 SINE MIR -15 193 69 229 302 42 21 chr1 127630978 127631074 -115033279 + MIR SINE MIR 33 130 -78 848 263 41 30 chr1 127631150 127631416 -115032937 - MLT1E LTR MaLR -323 270 2 1849 157 4 0 chr1 127631524 127631804 -115032549 - AluJo SINE Alu -23 289 9 678 189 21 7 chr1 127631825 127631968 -115032385 + MER53 DNA DNA 45 189 0 491 254 36 7 chr1 127633279 127633467 -115030886 - MIR SINE MIR -50 212 22 246 280 122 9 chr1 127633772 127633879 -115030474 + MIR3 SINE MIR 83 201 -7 245 368 112 0 chr1 127635564 127635689 -115028664 - MIR SINE MIR -52 210 72 315 232 225 35 chr1 127635694 127635836 -115028517 - MER96 DNA MER1_type? -6 169 1 1801 174 3 22 chr1 127636256 127636573 -115027780 + AluJo SINE Alu 1 311 -1 2306 94 10 0 chr1 127636994 127637291 -115027062 + AluSp SINE Alu 1 300 -13 300 340 86 19 chr1 127637929 127638091 -115026262 + L2 LINE L2 3078 3250 -22 1952 137 0 27 chr1 127639796 127640096 -115024257 + AluSx SINE Alu 1 292 -20 252 0 0 0 chr1 127640097 127640125 -115024228 + (GA)n Simple_repeat Simple_repeat 1 28 0 747 288 45 76 chr1 127640327 127640681 -115023672 - L2 LINE L2 -1 3271 2929 456 206 5 132 chr1 127640807 127641011 -115023342 - MER104 DNA MER2_type 0 180 3 210 250 0 53 chr1 127641388 127641464 -115022889 + MER5A DNA MER1_type 103 177 -4 255 277 89 18 chr1 127641879 127641991 -115022362 + L2 LINE L2 2936 3055 -217 392 314 71 7 chr1 127642097 127642237 -115022116 + MIR SINE MIR 57 205 -57 4568 221 39 43 chr1 127642708 127643652 -115020701 + L1MC1 LINE L1 3666 4612 -1534 2258 120 0 0 chr1 127643652 127643952 -115020401 + AluSx SINE Alu 1 300 -12 4568 221 39 43 chr1 127643952 127644197 -115020156 + L1MC1 LINE L1 4612 4852 -1294 1382 110 101 0 chr1 127644197 127644406 -115019947 - MER30 DNA MER1_type 0 230 1 4568 221 39 43 chr1 127644406 127644568 -115019785 + L1MC1 LINE L1 4852 5013 -1133 6377 159 13 29 chr1 127645319 127645493 -115018860 + L1MC1 LINE L1 5004 5179 -1154 1665 175 0 15 chr1 127645493 127645767 -115018586 + AluJb SINE Alu 12 281 -31 288 0 0 0 chr1 127645769 127645801 -115018552 + (TTAAA)n Simple_repeat Simple_repeat 3 34 0 6377 159 13 29 chr1 127645801 127646470 -115017883 + L1MC1 LINE L1 5180 5816 -517 2251 117 3 0 chr1 127646470 127646770 -115017583 + AluSx SINE Alu 1 301 -11 6377 159 13 29 chr1 127646770 127647275 -115017078 + L1MC1 LINE L1 5816 6328 -5 689 178 52 159 chr1 127647276 127647585 -115016768 + HAL1 LINE L1 1335 1610 -897 1506 185 16 29 chr1 127647585 127647893 -115016460 - MER82 DNA MER2_type -349 304 1 324 345 57 30 chr1 127648299 127648563 -115015790 + L1MEd LINE L1 1289 1559 -4971 382 275 67 8 chr1 127648667 127648787 -115015566 + HAL1 LINE L1 1431 1557 -950 1235 213 4 25 chr1 127648793 127649037 -115015316 + MER8 DNA MER2_type 1 239 0 1129 276 98 88 chr1 127649599 127650937 -115013416 + L1MEd LINE L1 2451 3797 -2743 2291 91 0 28 chr1 127650954 127651273 -115013080 + AluY SINE Alu 1 310 -1 578 210 95 48 chr1 127651292 127651544 -115012809 + L1MEd LINE L1 4109 4372 -2168 1582 171 40 24 chr1 127651638 127651936 -115012417 - AluJo SINE Alu -9 303 1 478 94 0 0 chr1 127652187 127652289 -115012064 - Alu SINE Alu 0 322 221 966 70 0 0 chr1 127652289 127652404 -115011949 - AluY SINE Alu -196 115 1 857 236 20 43 chr1 127652493 127652643 -115011710 + L1MD2 LINE L1 5974 6126 -1869 201 39 0 0 chr1 127652643 127652669 -115011684 + (GA)n Simple_repeat Simple_repeat 2 27 0 857 236 20 43 chr1 127652669 127652833 -115011520 + L1MD2 LINE L1 6126 7949 -46 25 31 0 0 chr1 127653203 127653235 -115011118 + AT_rich Low_complexity Low_complexity 1 32 0 195 347 193 0 chr1 127653364 127653514 -115010839 + L2 LINE L2 2851 3029 -243 357 238 12 0 chr1 127653687 127653767 -115010586 + L2 LINE L2 3224 3304 -9 2358 87 0 0 chr1 127654130 127654418 -115009935 + AluSg SINE Alu 1 288 -22 1053 186 5 0 chr1 127654592 127654791 -115009562 + L1PB1 LINE L1 1 200 -6663 15094 177 43 14 chr1 127654791 127656948 -115007405 + L1PB1 LINE L1 634 2728 -4139 189 0 0 0 chr1 127656948 127656969 -115007384 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 15094 177 43 14 chr1 127656969 127659130 -115005223 + L1PB1 LINE L1 2728 5325 -1542 2680 58 0 0 chr1 127659130 127659441 -115004912 + AluY SINE Alu 1 311 0 15094 177 43 14 chr1 127659441 127661030 -115003323 + L1PB1 LINE L1 5325 6867 0 1638 171 9 41 chr1 127661080 127661396 -115002957 + AluJb SINE Alu 6 311 -1 183 42 0 0 chr1 127661964 127661988 -115002365 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2067 122 0 0 chr1 127661988 127662266 -115002087 - AluSg SINE Alu -32 278 1 2355 57 23 36 chr1 127662279 127662580 -115001773 - AluY SINE Alu -14 297 1 1868 151 0 7 chr1 127662612 127662890 -115001463 + AluJb SINE Alu 5 280 -32 204 40 0 0 chr1 127662890 127662915 -115001438 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3257 126 56 4 chr1 127663253 127663786 -115000567 - L1MC1 LINE L1 -11 6322 5762 2746 98 65 160 chr1 127663786 127664272 -115000081 + LTR38B LTR ERV1 1 407 -203 2129 112 17 0 chr1 127664272 127664566 -114999787 - AluSc SINE Alu -10 299 1 2746 98 65 160 chr1 127664566 127664753 -114999600 + LTR38B LTR ERV1 407 610 0 423 126 42 6 chr1 127664753 127664836 -114999517 - L1MC1 LINE L1 -568 5765 5672 711 148 246 0 chr1 127665483 127665625 -114998728 + LTR38B LTR ERV1 269 445 -165 192 77 0 0 chr1 127665625 127665651 -114998702 + (T)n Simple_repeat Simple_repeat 1 26 0 1073 221 97 68 chr1 127665882 127666411 -114997942 - MER39 LTR ERV1 0 707 1 1091 253 146 16 chr1 127666931 127667362 -114996991 - LTR33 LTR ERVL -2 519 33 223 275 12 12 chr1 127668026 127668106 -114996247 - L2 LINE L2 0 3272 3193 2220 131 0 0 chr1 127668114 127668426 -114995927 + AluSx SINE Alu 1 312 0 2267 85 41 0 chr1 127669244 127669537 -114994816 + AluY SINE Alu 1 305 -6 351 0 0 0 chr1 127670972 127671011 -114993342 + (CA)n Simple_repeat Simple_repeat 2 40 0 405 292 81 81 chr1 127671227 127671781 -114992572 - LTR67 LTR ERVL -2 555 2 1066 318 77 33 chr1 127671851 127672304 -114992049 + L1MEd LINE L1 3 500 -5619 2332 103 0 3 chr1 127672304 127672615 -114991738 + AluSq SINE Alu 1 310 -3 1066 318 77 33 chr1 127672615 127672879 -114991474 + L1MEd LINE L1 500 751 -5368 2271 112 0 0 chr1 127672892 127673186 -114991167 + AluSx SINE Alu 1 294 -18 2947 97 0 17 chr1 127673224 127673664 -114990689 + MER1A DNA MER1_type 59 528 -1 311 291 122 17 chr1 127673754 127673926 -114990427 + L1MEd LINE L1 958 1147 -4972 1678 169 0 67 chr1 127674020 127674333 -114990020 + AluJo SINE Alu 1 292 -20 1606 100 45 22 chr1 127674752 127675021 -114989332 + L1MA4A LINE L1 6022 6296 -7 476 261 83 50 chr1 127675126 127675463 -114988890 + L1MEd LINE L1 1213 1581 -4569 743 253 69 75 chr1 127676415 127676791 -114987562 - MLT1I LTR MaLR -6 403 30 1690 183 0 0 chr1 127678624 127678908 -114985445 + AluJb SINE Alu 14 297 -15 195 114 0 0 chr1 127679909 127679944 -114984409 + (CAATT)n Simple_repeat Simple_repeat 1 35 0 2160 100 0 24 chr1 127680598 127680889 -114983464 + AluSg SINE Alu 2 285 -25 259 32 0 0 chr1 127680889 127680920 -114983433 + (TAAA)n Simple_repeat Simple_repeat 2 128 0 2729 155 74 33 chr1 127681168 127681684 -114982669 + MER68 LTR ERV1 25 561 -1 808 265 74 52 chr1 127681763 127682223 -114982130 - HAL1 LINE L1 -17 2490 2021 2941 259 125 61 chr1 127682366 127684059 -114980294 - HAL1 LINE L1 -698 1809 8 489 302 28 22 chr1 127684212 127684391 -114979962 + MER5A DNA MER1_type 10 189 0 1317 254 170 16 chr1 127684964 127685523 -114978830 - L1ME4a LINE L1 -2 6119 5475 474 280 113 24 chr1 127685516 127685852 -114978501 - HAL1 LINE L1 -5 2502 2137 * 896 200 23 6 chr1 127686394 127686569 -114977784 + MER20 DNA MER1_type 1 178 -41 2164 64 14 37 chr1 127686631 127686928 -114977425 - AluSx SINE Alu -22 290 1 387 280 48 36 chr1 127687847 127688015 -114976338 - MIR SINE MIR -10 252 83 1909 131 8 105 chr1 127688557 127688946 -114975407 - MER54B LTR ERVL -2 791 441 1904 148 62 15 chr1 127688925 127689250 -114975103 - MER54B LTR ERVL -453 340 1 * 2273 102 16 0 chr1 127689401 127689705 -114974648 + AluSx SINE Alu 1 309 -3 435 251 194 31 chr1 127690029 127690220 -114974133 + MIR SINE MIR 7 228 -34 213 208 97 28 chr1 127690241 127690313 -114974040 + L2 LINE L2 3189 3265 -7 2292 120 52 12 chr1 127690976 127691300 -114973053 + MER1B DNA MER1_type 1 337 0 1872 164 68 37 chr1 127691596 127691864 -114972489 - MLT1A1 LTR MaLR 0 365 82 2168 110 13 10 chr1 127691864 127692173 -114972180 - AluSp SINE Alu -1 312 3 1872 164 68 37 chr1 127692173 127692258 -114972095 - MLT1A1 LTR MaLR -283 82 1 2252 90 3 10 chr1 127692422 127692723 -114971630 - AluY SINE Alu -12 299 1 1247 267 98 12 chr1 127692917 127693053 -114971300 + L3 LINE CR1 581 704 -873 551 213 128 30 chr1 127693053 127693217 -114971136 + MER104 DNA MER2_type 1 180 0 1247 267 98 12 chr1 127693217 127693582 -114970771 + L3 LINE CR1 704 1125 -452 328 230 79 9 chr1 127693873 127694057 -114970296 + LTR16A LTR ERVL 203 450 0 406 307 179 7 chr1 127694221 127694361 -114969992 + MER5A DNA MER1_type 26 189 0 1870 217 156 36 chr1 127696083 127696273 -114968080 + L1MDb LINE L1 790 956 -5450 1886 180 27 124 chr1 127696273 127696823 -114967530 - MLT1D LTR MaLR -4 501 5 1870 217 156 36 chr1 127696823 127697471 -114966882 + L1MDb LINE L1 956 1682 -4724 644 268 84 61 chr1 127697559 127697619 -114966734 + L1ME4a LINE L1 5533 5590 -531 1863 128 0 0 chr1 127697619 127697877 -114966476 - AluSx SINE Alu -7 305 48 644 268 84 61 chr1 127697877 127698376 -114965977 + L1ME4a LINE L1 5590 6105 -16 2052 218 49 51 chr1 127698554 127699081 -114965272 - MLT1F LTR MaLR -15 527 2 938 334 160 16 chr1 127699742 127700293 -114964060 + L3 LINE CR1 422 1051 -526 1903 201 43 0 chr1 127700566 127700915 -114963438 + MLT1A1 LTR MaLR 2 365 0 2884 201 40 42 chr1 127700929 127701347 -114963006 + MLT1E3 LTR MaLR 1 419 -205 1604 157 48 41 chr1 127701347 127701641 -114962712 + AluJo SINE Alu 1 296 -16 2884 201 40 42 chr1 127701641 127701845 -114962508 + MLT1E3 LTR MaLR 419 622 -2 988 165 8 125 chr1 127702050 127702298 -114962055 - MER20 DNA MER1_type 0 219 1 542 311 117 19 chr1 127702305 127702717 -114961636 + MLT1L LTR MaLR 163 614 -1 216 333 200 0 chr1 127702835 127702970 -114961383 - MIR SINE MIR -67 195 34 438 272 47 30 chr1 127703806 127703975 -114960378 - MIR SINE MIR -6 256 85 731 198 28 33 chr1 127704160 127704342 -114960011 - MIR SINE MIR 0 262 82 475 293 77 29 chr1 127704363 127704571 -114959782 - MIR SINE MIR -15 247 30 1138 154 49 87 chr1 127705452 127705738 -114958615 + ORSL DNA AcHobo 1 275 0 241 312 175 0 chr1 127706103 127706257 -114958096 - L2 LINE L2 -809 2505 2325 260 380 0 0 chr1 127706268 127706368 -114957985 + L2 LINE L2 3169 3268 -4 588 316 107 5 chr1 127706495 127706710 -114957643 + LTR16C LTR ERVL 81 317 -174 1666 180 55 39 chr1 127706896 127707329 -114957024 - L1M4 LINE L1 -3322 2824 2385 359 221 125 0 chr1 127707328 127707432 -114956921 + L1MB3 LINE L1 2904 3020 -3126 * 822 240 5 36 chr1 127707433 127707625 -114956728 + AluJo SINE Alu 126 311 -1 847 120 11 43 chr1 127707629 127707813 -114956540 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 1227 206 57 11 chr1 127707813 127708181 -114956172 + L1MB3 LINE L1 3035 3419 -2727 1471 174 27 86 chr1 127708181 127708569 -114955784 - MLT1A1 LTR MaLR -3 454 1 259 108 0 0 chr1 127708573 127708610 -114955743 + U3 snRNA snRNA 1 37 -180 7600 186 37 60 chr1 127708622 127710253 -114954100 + L1MB3 LINE L1 3419 4948 -1235 207 0 0 0 chr1 127710253 127710276 -114954077 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7600 186 37 60 chr1 127710276 127711434 -114952919 + L1MB3 LINE L1 4948 6131 -52 1059 203 14 23 chr1 127711439 127711656 -114952697 + AluJb SINE Alu 84 298 -14 2189 105 24 0 chr1 127711679 127711975 -114952378 - AluSq SINE Alu -10 303 1 268 299 79 16 chr1 127711978 127712105 -114952248 - L3 LINE CR1 -311 1266 1132 896 291 20 8 chr1 127712143 127712387 -114951966 - MIR SINE MIR -1 261 15 2088 130 0 19 chr1 127712552 127712867 -114951486 + AluSx SINE Alu 3 311 -1 225 213 5 202 chr1 127712869 127713057 -114951296 + HAL1b LINE L1 1191 1341 -7 3881 193 50 6 chr1 127713061 127713849 -114950504 - L1MB7 LINE L1 -9 6175 5354 1073 297 30 14 chr1 127713897 127714267 -114950086 - L3 LINE CR1 -483 1094 719 1928 158 0 0 chr1 127714338 127714650 -114949703 - AluJb SINE Alu 0 312 1 1525 210 7 4 chr1 127714733 127715014 -114949339 + AluJb SINE Alu 1 282 -30 812 114 8 0 chr1 127715016 127715147 -114949206 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 1479 167 28 4 chr1 127716096 127716348 -114948005 - AluSx SINE Alu -13 299 42 530 335 54 31 chr1 127716359 127717515 -114946838 - L1ME LINE L1 -505 5659 4475 26 30 0 0 chr1 127717601 127717634 -114946719 + AT_rich Low_complexity Low_complexity 1 33 0 183 326 158 0 chr1 127717923 127718018 -114946335 + MIR SINE MIR 30 139 -69 468 312 74 41 chr1 127718803 127718943 -114945410 + L2 LINE L2 3029 3163 -150 192 77 0 0 chr1 127718943 127718969 -114945384 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 468 312 74 41 chr1 127718969 127719097 -114945256 + L2 LINE L2 3163 3306 -7 21 0 0 0 chr1 127719972 127719993 -114944360 + AT_rich Low_complexity Low_complexity 1 21 0 262 263 30 0 chr1 127720201 127720300 -114944053 + L1ME4a LINE L1 6020 6121 0 397 346 0 8 chr1 127721222 127721352 -114943001 - MER5B DNA MER1_type -49 129 1 1494 101 0 0 chr1 127722681 127722870 -114941483 + AluSx SINE Alu 1 189 -123 464 131 0 0 chr1 127722872 127722968 -114941385 + AluSx SINE Alu 227 322 0 207 88 0 0 chr1 127723034 127723068 -114941285 + (TG)n Simple_repeat Simple_repeat 1 34 0 285 308 11 0 chr1 127725078 127725169 -114939184 - MIR SINE MIR -18 244 153 190 191 16 16 chr1 127725268 127725331 -114939022 + (CCA)n Simple_repeat Simple_repeat 1 63 0 486 208 10 0 chr1 127725467 127725563 -114938790 - FLAM_A SINE Alu 0 142 46 577 342 56 46 chr1 127726104 127726682 -114937671 + L2 LINE L2 2678 3260 -12 231 36 0 0 chr1 127727386 127727414 -114936939 + (T)n Simple_repeat Simple_repeat 1 28 0 2374 78 3 3 chr1 127727879 127728188 -114936165 + AluY SINE Alu 1 309 -2 432 163 0 12 chr1 127728188 127728268 -114936085 + AluS SINE Alu 230 308 -2 2120 141 0 0 chr1 127728273 127728577 -114935776 + AluSx SINE Alu 1 304 -8 298 200 29 14 chr1 127729423 127729493 -114934860 + MIR3 SINE MIR 110 180 -28 2176 113 0 13 chr1 127730043 127730353 -114934000 - AluSc SINE Alu -3 306 1 397 251 85 88 chr1 127731833 127731986 -114932367 - L1M2 LINE L1 -5878 971 695 258 290 8 16 chr1 127731986 127732110 -114932243 + (CGG)n Simple_repeat Simple_repeat 2 124 0 397 251 85 88 chr1 127732110 127732128 -114932225 - L1M2 LINE L1 -6154 695 678 21 71 0 0 chr1 127732533 127732575 -114931778 + GC_rich Low_complexity Low_complexity 1 42 0 322 217 17 0 chr1 127733954 127734014 -114930339 - MIR SINE MIR -87 121 61 249 233 22 67 chr1 127738913 127739003 -114925350 - MIR SINE MIR -111 151 66 2195 86 3 0 chr1 127740652 127740944 -114923409 + AluSg1 SINE Alu 1 293 -16 681 276 20 15 chr1 127742186 127742389 -114921964 - MIR SINE MIR -56 206 3 1238 92 46 15 chr1 127744287 127744482 -114919871 + MER21A LTR ERV1 1 201 -730 650 103 161 84 chr1 127744481 127744604 -114919749 + MER21A LTR ERV1 758 897 -34 * 2397 87 3 0 chr1 127744604 127744916 -114919437 + AluSp SINE Alu 1 313 0 650 103 161 84 chr1 127744916 127744947 -114919406 + MER21A LTR ERV1 897 924 -7 227 273 91 23 chr1 127745004 127745092 -114919261 - MIR SINE MIR -8 254 161 417 273 105 0 chr1 127745115 127745258 -114919095 + MIR SINE MIR 100 257 -5 22 0 0 0 chr1 127745296 127745318 -114919035 + AT_rich Low_complexity Low_complexity 1 22 0 204 97 0 0 chr1 127749278 127749309 -114915044 + (T)n Simple_repeat Simple_repeat 1 31 0 238 293 122 49 chr1 127753334 127753457 -114910896 + L2 LINE L2 3139 3270 -2 271 320 90 43 chr1 127754459 127754508 -114909845 - L1ME LINE L1 -354 5767 5722 2149 116 0 3 chr1 127754508 127754811 -114909542 - AluSx SINE Alu -10 302 1 271 320 90 43 chr1 127754811 127755039 -114909314 - L1ME LINE L1 -399 5722 5477 239 231 19 0 chr1 127755801 127755853 -114908500 - MIR SINE MIR -208 54 2 1762 117 57 0 chr1 127756083 127756364 -114907989 - AluSx SINE Alu -15 297 1 210 293 37 12 chr1 127760809 127760891 -114903462 + MIR3 SINE MIR 97 180 -28 212 233 92 42 chr1 127761580 127761700 -114902653 + L2 LINE L2 3160 3285 -28 610 170 195 19 chr1 127763587 127763746 -114900607 + MER5A DNA MER1_type 3 189 0 227 270 14 54 chr1 127765889 127765963 -114898390 + L2 LINE L2 2244 2314 -1000 917 178 86 0 chr1 127766424 127766598 -114897755 + MER5A DNA MER1_type 1 189 0 192 329 48 48 chr1 127767398 127767565 -114896788 + L2 LINE L2 3112 3278 -35 468 306 57 21 chr1 127767917 127768110 -114896243 + MIR SINE MIR 49 248 -14 456 210 70 63 chr1 127768271 127768414 -114895939 - MIR SINE MIR -112 150 7 586 115 135 39 chr1 127769029 127769158 -114895195 - FLAM_C SINE Alu 0 143 5 361 197 219 44 chr1 127769432 127769569 -114894784 - MIR SINE MIR -6 256 96 621 258 28 17 chr1 127769813 127769991 -114894362 + MLT1J1 LTR MaLR 3 182 -264 811 211 17 0 chr1 127770055 127770230 -114894123 + MER5B DNA MER1_type 1 178 0 1987 94 0 21 chr1 127770241 127770527 -114893826 + AluSq SINE Alu 34 313 0 761 175 94 53 chr1 127770548 127770719 -114893634 + MER5A DNA MER1_type 1 178 -11 531 197 105 66 chr1 127770719 127770871 -114893482 + MLT1J2 LTR MaLR 244 401 -49 843 184 92 20 chr1 127770935 127771131 -114893222 - MER63A DNA MER1_type 0 210 1 1004 173 9 53 chr1 127771373 127771599 -114892754 - MER20 DNA MER1_type -2 217 2 639 221 72 51 chr1 127771911 127772106 -114892247 + MIR SINE MIR 1 199 -63 252 341 73 16 chr1 127772129 127772252 -114892101 - L2 LINE L2 -5 3267 3138 592 183 29 0 chr1 127772524 127772628 -114891725 - U6 snRNA snRNA 0 107 1 551 225 52 64 chr1 127772766 127773015 -114891338 - L1MC5 LINE L1 -35 7926 7681 201 74 0 0 chr1 127773027 127773054 -114891299 + (T)n Simple_repeat Simple_repeat 1 27 0 585 274 69 57 chr1 127773198 127773727 -114890626 - L1ME LINE L1 -455 5711 5185 767 284 159 12 chr1 127773755 127774177 -114890176 + MLT1L LTR MaLR 119 602 -13 407 238 0 0 chr1 127774390 127774470 -114889883 + MER112 DNA MER1_type 181 260 0 180 77 0 0 chr1 127775230 127775256 -114889097 + (CA)n Simple_repeat Simple_repeat 1 26 0 525 254 125 36 chr1 127775707 127775931 -114888422 + MIR SINE MIR 8 251 -11 1752 149 10 7 chr1 127775950 127776238 -114888115 - AluJb SINE Alu -18 294 6 237 244 93 12 chr1 127776937 127777023 -114887330 - MIR SINE MIR -26 236 144 457 297 44 50 chr1 127777836 127778010 -114886343 - L1ME4a LINE L1 -238 5883 5710 1933 95 0 28 chr1 127778010 127778328 -114886025 - AluSq SINE Alu 0 313 23 457 297 44 50 chr1 127778328 127778473 -114885880 - L1ME4a LINE L1 -411 5710 5566 2504 33 7 0 chr1 127778563 127778869 -114885484 - AluY SINE Alu -3 308 1 1372 238 153 25 chr1 127779667 127780066 -114884287 + LTR16A LTR ERVL 1 450 0 1685 167 70 88 chr1 127780284 127780727 -114883626 + MLT1D LTR MaLR 71 505 0 416 233 119 13 chr1 127781565 127781724 -114882629 + MER104 DNA MER2_type 5 180 0 348 313 43 31 chr1 127783243 127783406 -114880947 - L2 LINE L2 -8 3264 3100 2302 162 40 34 chr1 127784047 127784522 -114879831 - L1MB7 LINE L1 -87 6097 5620 413 332 137 2 chr1 127785981 127786397 -114877956 - L1ME4a LINE L1 -51 6070 5599 761 152 0 43 chr1 127786400 127786538 -114877815 - FLAM_C SINE Alu -10 133 2 238 319 0 0 chr1 127786540 127786612 -114877741 - L1ME4a LINE L1 -512 5609 5538 231 225 38 12 chr1 127787820 127787900 -114876453 + L2 LINE L2 3159 3240 -73 210 118 0 0 chr1 127788692 127788726 -114875627 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 187 340 94 0 chr1 127788745 127788851 -114875502 - MIR SINE MIR -31 231 116 577 107 50 8 chr1 127788973 127789094 -114875259 + CT-rich Low_complexity Low_complexity 1 126 0 1798 166 10 20 chr1 127789094 127789396 -114874957 - AluJb SINE Alu -13 299 1 200 342 45 9 chr1 127789478 127789589 -114874764 + L3 LINE CR1 679 793 -784 260 300 44 0 chr1 127789924 127790014 -114874339 + MIR SINE MIR 155 248 -14 305 335 18 44 chr1 127790014 127790241 -114874112 - L1ME LINE L1 -367 5754 5534 2031 130 51 3 chr1 127790267 127790559 -114873794 - AluSx SINE Alu -6 306 1 23 33 0 0 chr1 127790567 127790597 -114873756 + AT_rich Low_complexity Low_complexity 1 30 0 393 167 89 0 chr1 127791057 127791147 -114873206 + MLT1C LTR MaLR 370 467 0 982 291 37 49 chr1 127791160 127791669 -114872684 + L2 LINE L2 2811 3313 0 206 32 32 0 chr1 127791685 127791716 -114872637 + (TG)n Simple_repeat Simple_repeat 1 32 0 339 279 68 27 chr1 127791718 127791865 -114872488 - MIR SINE MIR -18 244 92 564 144 0 10 chr1 127793270 127793367 -114870986 - L1MD2 LINE L1 -370 5989 5894 * 5966 228 35 89 chr1 127793365 127794746 -114869607 - L1MD1 LINE L1 0 6636 5183 1115 183 16 32 chr1 127794746 127794997 -114869356 + L1MB8 LINE L1 5925 6171 -7 5966 228 35 89 chr1 127794997 127795273 -114869080 - L1MD1 LINE L1 -1453 5183 4894 1254 192 109 13 chr1 127795273 127795585 -114868768 - MER2 DNA MER2_type -2 342 1 5966 228 35 89 chr1 127795585 127797712 -114866641 - L1MD1 LINE L1 -1742 4894 3022 * 2105 139 10 0 chr1 127797720 127798029 -114866324 - AluSx SINE Alu 0 312 1 7043 196 140 52 chr1 127798029 127800100 -114864253 - L1MD1 LINE L1 -4157 2383 108 3979 98 16 14 chr1 127800100 127800670 -114863683 - L1PA14 LINE L1 0 6161 5591 7043 196 140 52 chr1 127800670 127800766 -114863587 - L1MD1 LINE L1 -6432 108 22 2764 216 20 7 chr1 127800756 127801368 -114862985 - L1ME1 LINE L1 -250 5916 5297 * 2218 114 16 3 chr1 127801371 127801679 -114862674 - AluSx SINE Alu 0 312 1 411 235 0 12 chr1 127801682 127801767 -114862586 - AluS SINE Alu -218 84 1 180 0 0 0 chr1 127802417 127802437 -114861916 + (TTA)n Simple_repeat Simple_repeat 2 21 0 231 146 42 0 chr1 127803274 127803322 -114861031 + (CCCCAG)n Simple_repeat Simple_repeat 4 53 0 180 293 110 24 chr1 127804524 127804606 -114859747 + MIR SINE MIR 58 146 -116 1507 114 18 4 chr1 127804704 127805065 -114859288 - L1P5 LINE L1 -699 5452 5089 849 170 69 6 chr1 127805365 127805524 -114858829 + Tigger3b DNA MER2_type 1 169 -1062 5950 126 31 51 chr1 127805688 127806777 -114857576 + Tigger3b DNA MER2_type 164 1230 -1 527 158 69 18 chr1 127806855 127807069 -114857284 + L1ME3A LINE L1 5887 6139 -31 299 280 0 122 chr1 127807073 127807262 -114857091 + L2 LINE L2 3016 3181 -91 246 317 89 38 chr1 127807997 127808156 -114856197 + MIR SINE MIR 20 185 -68 438 226 74 88 chr1 127809045 127809262 -114855091 + MIR SINE MIR 46 259 -3 193 305 180 8 chr1 127810033 127810161 -114854192 - L2 LINE L2 -6 3266 3117 321 330 26 26 chr1 127811057 127811172 -114853181 + MIR SINE MIR 17 131 -77 625 62 0 62 chr1 127811172 127811268 -114853085 + HY3 scRNA scRNA 11 100 -1 2208 98 7 7 chr1 127811286 127811583 -114852770 + AluSx SINE Alu 1 297 -15 643 210 123 20 chr1 127811821 127812016 -114852337 - MIR SINE MIR 0 262 48 185 163 47 0 chr1 127813022 127813065 -114851288 + GA-rich Low_complexity Low_complexity 4 48 0 285 294 172 6 chr1 127814198 127814378 -114849975 - MIR SINE MIR 0 262 53 180 152 0 0 chr1 127814520 127814553 -114849800 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1877 153 10 32 chr1 127814714 127815027 -114849326 + AluJo SINE Alu 1 306 -6 739 139 0 33 chr1 127815210 127815332 -114849021 + FLAM_C SINE Alu 1 118 -15 32 0 0 0 chr1 127815332 127815364 -114848989 + AT_rich Low_complexity Low_complexity 1 32 0 404 246 109 51 chr1 127815497 127815635 -114848718 - MER69 DNA AcHobo -30 2496 2 1224 248 88 8 chr1 127815693 127816080 -114848273 - L1MC4a LINE L1 -1836 5972 5555 1288 61 0 0 chr1 127817278 127817443 -114846910 - L1PA5 LINE L1 0 6154 5990 2784 116 77 2 chr1 127817818 127818283 -114846070 + L1MB3 LINE L1 5683 6182 -1 2022 142 0 3 chr1 127818286 127818582 -114845771 - AluSx SINE Alu -17 295 1 37 0 0 0 chr1 127818584 127818621 -114845732 + AT_rich Low_complexity Low_complexity 1 37 0 333 339 15 8 chr1 127819979 127820109 -114844244 + MER5A DNA MER1_type 59 189 0 558 268 0 43 chr1 127820237 127820375 -114843978 + L2 LINE L2 3141 3272 0 272 193 101 67 chr1 127820419 127820538 -114843815 - MIR SINE MIR -70 192 70 216 179 18 71 chr1 127821645 127821701 -114842652 - L2 LINE L2 -6 3266 3214 197 327 0 0 chr1 127822431 127822483 -114841870 - L2 LINE L2 -70 3202 3151 870 218 105 66 chr1 127823507 127823537 -114840816 - LTR56 LTR ERV1 0 445 418 1930 148 7 3 chr1 127823537 127823827 -114840526 + AluSx SINE Alu 1 291 -21 870 218 105 66 chr1 127823827 127824223 -114840130 - LTR56 LTR ERV1 -27 418 2 216 235 0 39 chr1 127824414 127824465 -114839888 - L2 LINE L2 -8 3264 3216 1244 145 36 52 chr1 127824824 127825073 -114839280 + AluJo SINE Alu 42 286 -26 29 0 0 0 chr1 127825077 127825106 -114839247 + AT_rich Low_complexity Low_complexity 1 29 0 216 264 286 0 chr1 127825367 127825458 -114838895 + MIR SINE MIR 88 204 -58 24 0 0 0 chr1 127825503 127825527 -114838826 + AT_rich Low_complexity Low_complexity 1 24 0 230 56 28 0 chr1 127825802 127825838 -114838515 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1239 53 0 13 chr1 127825838 127825980 -114838373 - MER107 DNA MER1_type -52 145 4 213 319 33 11 chr1 127827120 127827211 -114837142 + MIR SINE MIR 94 186 -76 658 256 77 30 chr1 127829000 127829297 -114835056 - L1MC4a LINE L1 -1923 5885 5575 300 185 109 22 chr1 127829796 127829888 -114834465 - MLT1F LTR MaLR -55 487 388 1184 286 176 10 chr1 127830001 127830490 -114833863 - MLT1K LTR MaLR -17 571 2 327 313 106 34 chr1 127830639 127830818 -114833535 - L3 LINE CR1 -1 1576 1385 457 259 14 22 chr1 127830868 127831007 -114833346 - MIR SINE MIR -29 233 96 1029 313 189 17 chr1 127831056 127831297 -114833056 - L3 LINE CR1 -222 1355 1157 2053 122 7 10 chr1 127831297 127831591 -114832762 + AluSx SINE Alu 1 293 -19 1029 313 189 17 chr1 127831591 127832128 -114832225 - L3 LINE CR1 -420 1157 443 668 302 0 0 chr1 127832244 127832433 -114831920 + MIR SINE MIR 63 251 -11 1879 135 43 40 chr1 127832539 127832770 -114831583 - L1MA4 LINE L1 -6 6294 6060 2017 141 7 3 chr1 127832770 127833068 -114831285 - AluJb SINE Alu -13 299 1 1879 135 43 40 chr1 127833068 127833207 -114831146 - L1MA4 LINE L1 -240 6060 5923 221 169 0 46 chr1 127833581 127833646 -114830707 + CT-rich Low_complexity Low_complexity 2 63 0 1780 181 0 0 chr1 127833818 127834100 -114830253 + AluJb SINE Alu 1 282 -30 450 204 0 0 chr1 127834103 127834216 -114830137 + GA-rich Low_complexity Low_complexity 3 115 0 205 247 71 106 chr1 127834280 127834365 -114829988 + MER91C DNA MER1_type 36 117 -23 316 224 122 0 chr1 127834726 127834824 -114829529 - MIR SINE MIR -117 145 36 562 42 34 50 chr1 127834905 127835024 -114829329 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 2088 123 16 19 chr1 127835050 127835360 -114828993 - AluSx SINE Alu -3 309 1 1849 192 97 16 chr1 127835394 127835826 -114828527 - MLT1C LTR MaLR 0 467 1 29 0 0 0 chr1 127835950 127835979 -114828374 + AT_rich Low_complexity Low_complexity 1 29 0 319 183 191 61 chr1 127837180 127837311 -114827042 + L2 LINE L2 3162 3309 -4 189 234 0 149 chr1 127837337 127837389 -114826964 - MIR3 SINE MIR -19 189 159 2916 131 7 37 chr1 127837389 127837848 -114826505 - MER65A LTR ERV1 0 445 1 189 234 0 149 chr1 127837848 127837902 -114826451 - MIR3 SINE MIR -49 159 99 482 264 121 6 chr1 127838110 127838284 -114826069 + MER117 DNA MER1_type 4 197 0 990 213 23 19 chr1 127838463 127838679 -114825674 + U3 snRNA snRNA 1 217 0 835 262 14 9 chr1 127839482 127839692 -114824661 + MIR SINE MIR 50 260 -2 827 296 61 31 chr1 127839750 127840245 -114824108 + L1MC/D LINE L1 5174 5670 -482 201 306 0 0 chr1 127840247 127840296 -114824057 + L2 LINE L2 3199 3247 -25 441 246 29 18 chr1 127840296 127840447 -114823906 + L1MC/D LINE L1 5660 5811 -353 10866 185 34 88 chr1 127840552 127841511 -114822842 - L1M2 LINE L1 -620 6379 5369 828 194 0 22 chr1 127841511 127841650 -114822703 - AluJo SINE Alu -175 137 2 10866 185 34 88 chr1 127841650 127842423 -114821930 - L1M2 LINE L1 -1630 5369 4556 1241 167 0 20 chr1 127842423 127842627 -114821726 + AluJb SINE Alu 107 306 -6 10866 185 34 88 chr1 127842627 127844410 -114819943 - L1M2 LINE L1 -2443 4556 2823 21 57 0 0 chr1 127844488 127844523 -114819830 + AT_rich Low_complexity Low_complexity 1 35 0 198 319 48 43 chr1 127844749 127844937 -114819416 + L2 LINE L2 2789 2977 -337 2135 133 0 0 chr1 127845292 127845586 -114818767 + AluSx SINE Alu 1 294 -18 250 266 64 73 chr1 127845806 127845915 -114818438 - L2 LINE L2 -5 3267 3160 211 253 52 108 chr1 127846597 127846744 -114817609 + MIR SINE MIR 4 100 -108 436 270 29 22 chr1 127847060 127847197 -114817156 - MIR SINE MIR -98 164 27 253 229 181 0 chr1 127848189 127848272 -114816081 - MIR3 SINE MIR -26 182 85 247 281 214 44 chr1 127848487 127848613 -114815740 + L3 LINE CR1 1171 1274 -303 912 204 44 0 chr1 127848613 127848794 -114815559 + MER5A DNA MER1_type 1 189 0 247 281 214 44 chr1 127848794 127849009 -114815344 + L3 LINE CR1 1274 1570 -7 213 214 0 204 chr1 127849046 127849149 -114815204 + L2 LINE L2 3183 3264 -49 947 224 10 39 chr1 127849162 127849367 -114814986 + MER58A DNA MER1_type 26 224 0 280 228 0 0 chr1 127849369 127849426 -114814927 + L2 LINE L2 3256 3312 -1 476 310 75 28 chr1 127849514 127849727 -114814626 + MIR SINE MIR 38 260 -2 635 219 0 8 chr1 127852679 127852834 -114811519 - FLAM_C SINE Alu 0 154 1 231 143 0 0 chr1 127853894 127853929 -114810424 + Charlie8 DNA MER1_type 1393 1427 -990 255 280 11 32 chr1 127854095 127854188 -114810165 + MIR SINE MIR 71 161 -101 4604 125 20 4 chr1 127854355 127855061 -114809292 + L1PA16 LINE L1 5383 6099 -67 410 277 0 0 chr1 127855066 127855167 -114809186 - L1ME LINE L1 -368 5802 5702 342 71 29 86 chr1 127855186 127855256 -114809097 + L1PA16 LINE L1 6101 6166 0 436 243 51 5 chr1 127855378 127855526 -114808827 + MIR SINE MIR 30 187 -21 1543 141 4 40 chr1 127855551 127855827 -114808526 + AluJb SINE Alu 3 268 -44 885 175 6 29 chr1 127855977 127856148 -114808205 - MER97c DNA MER1_type? -855 235 69 2195 104 0 7 chr1 127856148 127856446 -114807907 + AluSg SINE Alu 1 296 -14 853 169 74 0 chr1 127856446 127856594 -114807759 + AluSg/x SINE Alu 132 290 -20 427 209 97 17 chr1 127856925 127857082 -114807271 - L1ME3A LINE L1 -172 5990 5822 4316 155 54 48 chr1 127857082 127858398 -114805955 - LTR12 LTR ERV1 -21 2417 31 1159 259 32 0 chr1 127858398 127858680 -114805673 - L1ME3A LINE L1 -319 5851 5561 217 235 15 29 chr1 127858964 127859032 -114805321 + A-rich Low_complexity Low_complexity 2 68 0 30 27 0 0 chr1 127859126 127859163 -114805190 + AT_rich Low_complexity Low_complexity 1 37 0 341 361 33 33 chr1 127859494 127859862 -114804491 + L2 LINE L2 2563 2930 -384 24 0 0 0 chr1 127859872 127859896 -114804457 + AT_rich Low_complexity Low_complexity 1 24 0 251 88 62 25 chr1 127859994 127860074 -114804279 + (TA)n Simple_repeat Simple_repeat 1 83 0 229 65 0 0 chr1 127860116 127860162 -114804191 + LTR66 LTR ERVL 394 439 -171 1951 143 10 3 chr1 127860184 127860478 -114803875 - AluSx SINE Alu -16 296 1 35 71 0 0 chr1 127860543 127860613 -114803740 + AT_rich Low_complexity Low_complexity 1 70 0 2240 164 55 12 chr1 127860621 127861043 -114803310 - L1MB8 LINE L1 -16 6162 5723 907 208 0 0 chr1 127861091 127861259 -114803094 - FRAM SINE Alu 0 176 9 1609 158 3 79 chr1 127861369 127861697 -114802656 + AluJb SINE Alu 1 303 -9 498 296 136 10 chr1 127862078 127862284 -114802069 + MIR SINE MIR 20 251 -11 653 288 116 21 chr1 127862379 127862612 -114801741 - MIR SINE MIR 0 262 8 222 302 15 12 chr1 127863095 127863187 -114801166 - MIR SINE MIR -64 144 86 5369 177 49 38 chr1 127863409 127865418 -114798935 - L1MB7 LINE L1 -5 6415 4392 871 203 36 82 chr1 127865410 127865751 -114798602 - L1MB7 LINE L1 -3823 2559 2204 * 846 98 0 0 chr1 127865751 127865873 -114798480 + (TA)n Simple_repeat Simple_repeat 1 122 0 252 0 0 0 chr1 127865872 127865900 -114798453 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 871 203 36 82 chr1 127865873 127865976 -114798377 - L1MB7 LINE L1 -4178 2204 2161 2071 212 58 12 chr1 127866246 127866745 -114797608 + Charlie1b DNA MER1_type 1 522 -1 456 304 103 92 chr1 127866950 127867829 -114796524 + L2 LINE L2 1952 2840 -474 293 324 129 25 chr1 127867856 127868174 -114796179 + L2 LINE L2 2947 3297 -16 2333 119 0 0 chr1 127868787 127869097 -114795256 - AluSx SINE Alu -1 311 2 180 77 0 0 chr1 127869911 127869937 -114794416 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 193 244 98 12 chr1 127870865 127870947 -114793406 + MIR SINE MIR 60 148 -60 1866 98 0 0 chr1 127871450 127871684 -114792669 - AluSg SINE Alu -76 234 1 298 292 22 0 chr1 127872413 127872502 -114791851 - MIR3 SINE MIR -46 162 72 266 340 10 0 chr1 127872841 127872944 -114791409 + MER91A DNA MER1_type 5 108 -88 241 104 0 42 chr1 127873232 127873280 -114791073 + L2 LINE L2 3014 3059 -213 1237 193 50 62 chr1 127873412 127873597 -114790756 + MER33 DNA MER1_type 1 182 -2403 1488 156 37 65 chr1 127873597 127873879 -114790474 + AluJo SINE Alu 1 274 -38 186 103 0 0 chr1 127873879 127873908 -114790445 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1488 156 37 65 chr1 127873908 127873946 -114790407 + AluJo SINE Alu 274 312 0 1237 193 50 62 chr1 127873946 127874082 -114790271 + MER33 DNA MER1_type 182 318 -6 212 377 58 0 chr1 127874088 127874157 -114790196 + L2 LINE L2 3151 3223 -49 625 182 146 0 chr1 127874390 127874500 -114789853 - AluSq/x SINE Alu -186 127 2 424 286 113 81 chr1 127874872 127875330 -114789023 - L1ME4a LINE L1 0 6121 5649 269 255 177 43 chr1 127875860 127876001 -114788352 + MIR SINE MIR 59 218 -44 604 326 49 5 chr1 127876180 127876404 -114787949 - MIR SINE MIR -6 256 23 493 264 195 59 chr1 127876535 127876941 -114787412 - MLT1K LTR MaLR -30 558 98 580 233 119 11 chr1 127877304 127877480 -114786873 - MLT1L LTR MaLR -48 567 373 1856 138 66 0 chr1 127877927 127878216 -114786137 - AluSg SINE Alu -2 308 1 2641 265 35 16 chr1 127878724 127879464 -114784889 + MER69 DNA AcHobo 11 764 -462 1718 175 63 62 chr1 127879525 127879590 -114784763 + MER69 DNA AcHobo 2017 2080 -446 2636 27 0 3 chr1 127879590 127879890 -114784463 + AluY SINE Alu 1 299 -12 1718 175 63 62 chr1 127879890 127880207 -114784146 + MER69 DNA AcHobo 2080 2403 -123 1657 174 14 14 chr1 127880207 127880501 -114783852 + AluJo SINE Alu 1 294 -18 1718 175 63 62 chr1 127880501 127880621 -114783732 + MER69 DNA AcHobo 2403 2521 -5 274 316 32 0 chr1 127880826 127880921 -114783432 + MIR3 SINE MIR 88 185 -23 272 239 0 30 chr1 127882201 127882323 -114782030 + (CATATA)n Simple_repeat Simple_repeat 1 118 0 275 302 0 0 chr1 127882879 127882962 -114781391 - MIR SINE MIR -63 145 73 204 327 159 0 chr1 127883318 127883431 -114780922 + MIR SINE MIR 86 216 -46 814 290 35 27 chr1 127883511 127883770 -114780583 - MIR SINE MIR 0 262 2 696 164 0 0 chr1 127883787 127883897 -114780456 - Tigger3(Golem) DNA MER2_type -1 3028 2919 234 0 0 0 chr1 127884053 127884079 -114780274 + (TA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr1 127884078 127884101 -114780252 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 229 130 0 0 chr1 127884101 127884147 -114780206 + LTR66 LTR ERVL 394 439 -171 * 237 152 0 0 chr1 127884111 127884157 -114780196 - LTR66 LTR ERVL -171 439 394 1684 130 15 11 chr1 127884208 127884470 -114779883 + AluSx SINE Alu 36 298 -14 1544 153 0 8 chr1 127884991 127885239 -114779114 + L1MD3 LINE L1 7742 7987 -8 25 75 0 0 chr1 127885425 127885478 -114778875 + AT_rich Low_complexity Low_complexity 1 53 0 872 302 37 19 chr1 127885573 127885694 -114778659 - L2 LINE L2 -37 3276 3159 1143 147 27 0 chr1 127885694 127885878 -114778475 + MER5A DNA MER1_type 1 189 0 872 302 37 19 chr1 127885878 127886133 -114778220 - L2 LINE L2 -154 3159 2893 952 220 4 90 chr1 127886879 127887188 -114777165 - Charlie4a DNA MER1_type -1 507 223 245 367 0 10 chr1 127887253 127887351 -114777002 + MIR SINE MIR 48 144 -64 543 243 59 0 chr1 127888082 127888218 -114776135 - MER5A DNA MER1_type 0 189 46 239 269 48 10 chr1 127888216 127888320 -114776033 + MIR SINE MIR 99 206 -56 * 417 325 85 8 chr1 127888842 127889088 -114775265 - L2 LINE L2 -937 2377 2113 380 314 35 23 chr1 127892633 127892805 -114771548 - MER5B DNA MER1_type -2 176 3 672 240 58 11 chr1 127894918 127895245 -114769108 + LTR16A LTR ERVL 57 450 0 362 307 179 7 chr1 127895409 127895549 -114768804 + MER5A DNA MER1_type 26 189 0 1546 203 164 43 chr1 127897271 127897461 -114766892 + L1MDb LINE L1 790 956 -5450 1725 180 27 124 chr1 127897461 127898011 -114766342 - MLT1D LTR MaLR -4 501 5 1546 203 164 43 chr1 127898011 127898528 -114765825 + L1MDb LINE L1 956 1536 -4870 22 0 0 0 chr1 127899356 127899378 -114764975 + AT_rich Low_complexity Low_complexity 1 22 0 2216 88 3 42 chr1 127899552 127899858 -114764495 + AluSp SINE Alu 1 294 -19 737 296 38 62 chr1 127900537 127901006 -114763347 - L1MC/D LINE L1 -2017 5791 5334 563 272 132 14 chr1 127901232 127901445 -114762908 - MIR SINE MIR -5 257 20 291 304 125 75 chr1 127902088 127902170 -114762183 + L2 LINE L2 2918 2994 -278 3532 63 2 0 chr1 127902170 127902614 -114761739 - L1PA5 LINE L1 0 6154 5710 291 304 125 75 chr1 127902614 127902866 -114761487 + L2 LINE L2 2994 3269 -3 1333 268 107 0 chr1 127903339 127903724 -114760629 - LTR16A LTR ERVL -8 442 17 441 298 167 0 chr1 127903843 127904011 -114760342 - LTR16C LTR ERVL -94 397 202 378 293 75 7 chr1 127904370 127904517 -114759836 + MIR SINE MIR 66 222 -40 276 100 0 0 chr1 127905408 127905448 -114758905 + (CA)n Simple_repeat Simple_repeat 1 40 0 408 228 33 0 chr1 127906663 127906755 -114757598 - MER5A DNA MER1_type -86 103 9 2660 152 67 32 chr1 127907201 127907321 -114757032 - L1MB4 LINE L1 0 6180 6066 2539 57 0 3 chr1 127907321 127907621 -114756732 - AluY SINE Alu -12 299 1 2660 152 67 32 chr1 127907621 127908034 -114756319 - L1MB4 LINE L1 -114 6066 5628 317 174 58 0 chr1 127908062 127908131 -114756222 - L1MB4 LINE L1 -543 5640 5568 21 0 0 0 chr1 127908131 127908152 -114756201 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chr1 127909113 127909153 -114755200 + (CA)n Simple_repeat Simple_repeat 2 41 0 2300 84 11 0 chr1 127909548 127909832 -114754521 + AluSg SINE Alu 1 287 -23 247 75 0 0 chr1 127909844 127909884 -114754469 - Alu SINE Alu -1 302 263 1045 77 0 0 chr1 127910466 127910596 -114753757 + AluSp/q SINE Alu 163 292 -21 3315 277 60 29 chr1 127910600 127912155 -114752198 + L1MEc LINE L1 38 1641 -4755 427 267 182 0 chr1 127913783 127913948 -114750405 - MIR SINE MIR -1 261 67 878 143 0 27 chr1 127913949 127914096 -114750257 + FLAM_C SINE Alu 1 143 0 232 349 0 0 chr1 127914102 127914168 -114750185 - MIR SINE MIR -176 86 21 386 224 94 59 chr1 127914427 127914597 -114749756 - L1ME4a LINE L1 -218 5903 5728 2376 105 0 0 chr1 127915139 127915445 -114748908 - AluSq SINE Alu -7 306 1 877 141 96 0 chr1 127915661 127915817 -114748536 - MER96 DNA MER1_type -4 171 1 22 35 0 0 chr1 127916727 127916756 -114747597 + AT_rich Low_complexity Low_complexity 1 29 0 2062 133 13 0 chr1 127916905 127917207 -114747146 + AluSx SINE Alu 1 306 -6 1682 178 0 71 chr1 127917236 127917562 -114746791 + AluJb SINE Alu 1 303 -9 2311 118 0 0 chr1 127917924 127918228 -114746125 - AluSq SINE Alu -9 304 1 1363 172 0 5 chr1 127918591 127918812 -114745541 + MLT1G1 LTR MaLR 4 223 -372 662 237 93 0 chr1 127918858 127919037 -114745316 + MIR SINE MIR 69 262 0 348 300 50 7 chr1 127919512 127919652 -114744701 + L2 LINE L2 3164 3309 -4 2262 155 53 24 chr1 127921155 127921569 -114742784 + MSTB LTR MaLR 1 426 0 231 283 40 20 chr1 127921571 127921670 -114742683 - MIR SINE MIR -97 165 65 1968 162 0 0 chr1 127922820 127923117 -114741236 + AluSx SINE Alu 1 297 -15 506 131 50 20 chr1 127923463 127923562 -114740791 - L1MA1 LINE L1 -7 6295 6194 489 158 38 0 chr1 127923580 127923713 -114740640 - MER63B DNA MER1_type -92 344 207 1366 171 77 115 chr1 127923713 127924181 -114740172 + LTR7 LTR ERV1 1 450 0 1928 199 56 14 chr1 127924181 127924609 -114739744 + HERVH LTR ERV1 1 446 -7267 10139 131 32 30 chr1 127924675 127926382 -114737971 + HERVH LTR ERV1 800 2509 -5204 17631 102 6 36 chr1 127926482 127929170 -114735183 + HERVH LTR ERV1 2415 5020 -2693 2774 120 7 12 chr1 127929175 127929607 -114734746 + HERVH LTR ERV1 7284 7713 0 1819 122 36 8 chr1 127929607 127929958 -114734395 + LTR7 LTR ERV1 1 450 0 909 220 38 29 chr1 127929958 127930167 -114734186 - MER63B DNA MER1_type -225 211 1 1785 103 141 0 chr1 127930979 127931242 -114733111 + AluSg SINE Alu 1 300 0 394 161 0 12 chr1 127931255 127931336 -114733017 + GA-rich Low_complexity Low_complexity 3 82 0 1425 267 75 29 chr1 127931391 127931543 -114732810 + L2 LINE L2 2356 2500 -813 2030 147 10 0 chr1 127931543 127931849 -114732504 - AluSx SINE Alu -1 311 3 1425 267 75 29 chr1 127931849 127932579 -114731774 + L2 LINE L2 2500 3288 -25 595 223 120 37 chr1 127932579 127932837 -114731516 - MLT1F1 LTR MaLR -2 557 257 2205 118 3 3 chr1 127932857 127933162 -114731191 - AluSg SINE Alu -4 306 2 292 272 0 61 chr1 127933212 127933326 -114731027 + GA-rich Low_complexity Low_complexity 1 107 0 1289 262 48 37 chr1 127934419 127934881 -114729472 - MLT1J LTR MaLR -44 467 1 1425 214 61 17 chr1 127935051 127935397 -114728956 - MLT1A1 LTR MaLR -4 361 1 1810 102 0 8 chr1 127936059 127936304 -114728049 - AluSg/x SINE Alu -3 307 65 962 190 70 50 chr1 127936307 127936507 -114727846 - AluJo SINE Alu -24 288 85 4159 118 71 57 chr1 127936674 127937448 -114726905 - LTR1 LTR ERV1 0 785 1 2381 102 0 3 chr1 127937584 127937889 -114726464 - AluSx SINE Alu -2 310 7 321 286 135 31 chr1 127938204 127938396 -114725957 + MIR SINE MIR 47 258 -4 339 281 177 5 chr1 127938434 127938626 -114725727 + MIR SINE MIR 22 246 -16 21 0 0 0 chr1 127939421 127939442 -114724911 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr1 127939744 127939787 -114724566 + (TG)n Simple_repeat Simple_repeat 1 43 0 234 286 0 0 chr1 127940462 127940511 -114723842 - LTR67 LTR ERVL -80 477 429 574 161 22 128 chr1 127941907 127942004 -114722349 - MER97a DNA MER1_type? -715 179 108 2061 120 0 29 chr1 127942004 127942312 -114722041 - AluSx SINE Alu -13 299 1 574 161 22 128 chr1 127942312 127942394 -114721959 - MER97a DNA MER1_type? -786 108 19 263 255 113 14 chr1 127942733 127942874 -114721479 + MIR SINE MIR 102 256 -6 264 277 20 40 chr1 127942874 127942975 -114721378 - FLAM_A SINE Alu 0 133 35 * 278 156 42 113 chr1 127942949 127943072 -114721281 - AluJo/FLAM SINE Alu -174 128 86 1226 185 5 14 chr1 127943072 127943294 -114721059 - AluJo SINE Alu -92 220 1 371 161 0 0 chr1 127943602 127943664 -114720689 - L1MC4 LINE L1 -819 7223 7162 212 83 0 28 chr1 127943670 127943706 -114720647 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 607 194 0 0 chr1 127943710 127943808 -114720545 - AluJb SINE Alu -27 285 188 1762 242 81 32 chr1 127943809 127944287 -114720066 - L1MC4 LINE L1 -904 7138 6620 3922 88 22 25 chr1 127944287 127944724 -114719629 + MER41A LTR ERV1 1 437 -117 2479 67 0 13 chr1 127944724 127945024 -114719329 - AluY SINE Alu -15 296 1 3922 88 22 25 chr1 127945024 127945142 -114719211 + MER41A LTR ERV1 437 554 0 1762 242 81 32 chr1 127945142 127945292 -114719061 - L1MC4 LINE L1 -1422 6620 6479 3017 80 13 47 chr1 127945431 127945895 -114718458 - LTR7 LTR ERV1 -2 448 1 208 211 0 0 chr1 127945920 127945958 -114718395 + GA-rich Low_complexity Low_complexity 2 39 0 640 168 0 0 chr1 127946876 127946977 -114717376 - MER63 DNA MER1_type -1 1061 961 2280 87 0 19 chr1 127947026 127947338 -114717015 - AluY SINE Alu -5 306 1 1950 145 21 0 chr1 127947338 127947627 -114716726 - AluSx SINE Alu -12 300 6 975 286 79 21 chr1 127947633 127948160 -114716193 - MLT1F1 LTR MaLR -33 500 1 588 166 26 114 chr1 127948546 127948739 -114715614 + L1MC5 LINE L1 6906 7081 -880 733 216 38 27 chr1 127948743 127948928 -114715425 + LTR41 LTR ERVL 1 187 -586 1970 153 0 7 chr1 127949010 127949305 -114715048 - AluSx SINE Alu -19 293 1 2094 159 47 34 chr1 127949350 127949893 -114714460 + MLT2A2 LTR ERVL 1 554 0 534 235 43 27 chr1 127950021 127950148 -114714205 + LTR41 LTR ERVL 584 716 -57 2186 123 0 3 chr1 127950148 127950450 -114713903 + AluSg SINE Alu 1 301 -9 534 235 43 27 chr1 127950450 127950509 -114713844 + LTR41 LTR ERVL 716 773 0 399 195 98 30 chr1 127950509 127950678 -114713675 + L1MC5 LINE L1 7086 7262 -728 733 211 81 0 chr1 127950714 127950875 -114713478 + MER69A DNA AcHobo 1 174 -3 1240 237 52 55 chr1 127951008 127951586 -114712767 + L1MC5 LINE L1 7317 7892 -69 324 320 66 17 chr1 127951718 127951899 -114712454 - MIR SINE MIR -51 211 22 184 222 206 0 chr1 127951920 127951983 -114712370 + MIR SINE MIR 79 154 -108 2280 118 0 0 chr1 127952642 127952938 -114711415 + AluSx SINE Alu 2 297 -15 28 29 0 0 chr1 127953054 127953089 -114711264 + AT_rich Low_complexity Low_complexity 1 35 0 307 278 70 9 chr1 127953133 127953248 -114711105 + MIR SINE MIR 85 206 -56 742 185 0 8 chr1 127953707 127953837 -114710516 + FRAM SINE Alu 34 162 -14 29 28 0 0 chr1 127953837 127953873 -114710480 + AT_rich Low_complexity Low_complexity 1 36 0 2157 104 0 10 chr1 127953884 127954183 -114710170 + AluSx SINE Alu 5 300 -12 706 200 0 15 chr1 127954229 127954386 -114709967 + FLAM_C SINE Alu 1 155 0 487 240 15 61 chr1 127954390 127954467 -114709886 + L1ME1 LINE L1 2140 2219 -3927 2582 68 0 0 chr1 127954467 127954777 -114709576 + AluY SINE Alu 1 310 -1 487 240 15 61 chr1 127954777 127954895 -114709458 + L1ME1 LINE L1 2219 2326 -3820 * 3872 228 40 9 chr1 127954883 127955802 -114708551 + L1ME1 LINE L1 5218 6166 0 481 253 0 151 chr1 127955866 127955884 -114708469 - MLT1L LTR MaLR -332 283 264 2108 142 3 0 chr1 127955884 127956193 -114708160 + AluSg SINE Alu 1 310 0 481 253 0 151 chr1 127956193 127956459 -114707894 - MLT1L LTR MaLR -351 264 42 680 215 0 15 chr1 127956460 127956595 -114707758 + FLAM_C SINE Alu 1 133 0 550 271 32 37 chr1 127956642 127956830 -114707523 - MLT1J2 LTR MaLR 0 450 264 285 311 28 13 chr1 127956857 127957003 -114707350 - MLT1J LTR MaLR -205 204 64 1799 154 14 4 chr1 127957148 127957469 -114706884 - AluJb SINE Alu 0 324 1 633 226 32 26 chr1 127957495 127957685 -114706668 - MIR SINE MIR -70 192 2 333 118 0 0 chr1 127958195 127958246 -114706107 - MADE1 DNA Mariner 0 80 30 406 190 0 0 chr1 127958658 127958737 -114705616 + MIR3 SINE MIR 82 160 -48 277 292 119 82 chr1 127958831 127959050 -114705303 - L2 LINE L2 -15 3257 3031 521 325 6 0 chr1 127959318 127959484 -114704869 + LTR16C LTR ERVL 320 486 -5 1864 151 7 36 chr1 127960214 127960519 -114703834 + AluJo SINE Alu 1 296 -16 368 291 133 24 chr1 127961964 127962093 -114702260 - L3 LINE CR1 -283 1294 1181 1026 147 16 21 chr1 127962093 127962283 -114702070 + MER53 DNA DNA 1 189 0 368 291 133 24 chr1 127962283 127962363 -114701990 - L3 LINE CR1 -396 1181 1062 219 304 65 29 chr1 127963180 127963318 -114701035 - L3b LINE CR1 -63 1520 1378 283 287 89 0 chr1 127964581 127964682 -114699671 + L2 LINE L2 3193 3302 -11 221 262 16 0 chr1 127964655 127964716 -114699637 - L2 LINE L2 0 3313 3252 * 293 61 102 0 chr1 127965154 127965203 -114699150 - L1MB4 LINE L1 -4 6176 6123 364 164 16 0 chr1 127965205 127965266 -114699087 - FLAM SINE Alu -7 126 65 1684 162 0 35 chr1 127965312 127965627 -114698726 + AluJb SINE Alu 7 310 -2 274 279 14 0 chr1 127965658 127965748 -114698605 - FRAM/FAM SINE Alu -108 58 1 302 143 54 0 chr1 127965748 127965804 -114698549 - L1MB4 LINE L1 -45 6135 6077 201 289 170 22 chr1 127966351 127966486 -114697867 + MIR3 SINE MIR 30 184 -24 309 236 85 38 chr1 127967454 127967560 -114696793 - L2 LINE L2 -2 3311 3201 1425 179 75 4 chr1 127968322 127968590 -114695763 - AluJo SINE Alu -25 287 1 343 281 123 14 chr1 127968904 127969050 -114695303 + MIR SINE MIR 27 188 -74 270 242 359 0 chr1 127969112 127969240 -114695113 + MER5A DNA MER1_type 13 186 -3 195 42 0 0 chr1 127970072 127970096 -114694257 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 632 178 34 0 chr1 127970099 127970217 -114694136 - FRAM SINE Alu -30 146 25 830 193 42 33 chr1 127970218 127970430 -114693923 - MIR SINE MIR -48 214 1 474 263 90 19 chr1 127970523 127970679 -114693674 + MIR3 SINE MIR 38 204 -4 2099 143 0 0 chr1 127971309 127971603 -114692750 - AluSx SINE Alu -18 294 1 22 0 0 0 chr1 127973920 127973942 -114690411 + AT_rich Low_complexity Low_complexity 1 22 0 2351 103 0 0 chr1 127974823 127975124 -114689229 - AluSg1 SINE Alu -8 301 1 2188 123 3 0 chr1 127975832 127976132 -114688221 + AluSx SINE Alu 8 308 -4 1993 251 112 6 chr1 127977437 127977983 -114686370 - MLT2E LTR ERVL -7 621 18 1704 154 14 41 chr1 127978205 127978498 -114685855 - AluJb SINE Alu -11 301 17 1287 295 118 16 chr1 127979519 127980355 -114683998 + L2 LINE L2 2131 3061 -252 306 357 52 5 chr1 127980893 127981103 -114683250 + L2 LINE L2 1989 2208 -1106 1241 161 55 55 chr1 127981738 127981974 -114682379 + MER46A DNA MER2_type 1 236 0 355 196 113 45 chr1 127983550 127983683 -114680670 + MIR SINE MIR 46 187 -75 704 298 156 49 chr1 127983880 127984797 -114679556 - L1MEc LINE L1 -4240 2156 1071 1775 170 0 3 chr1 127984797 127985126 -114679227 - AluJo SINE Alu 0 328 1 704 298 156 49 chr1 127985126 127985442 -114678911 - L1MEc LINE L1 -5325 1071 790 337 335 73 35 chr1 127987171 127987460 -114676893 - L2 LINE L2 -182 3090 2792 955 256 58 13 chr1 127987472 127987781 -114676572 - L2 LINE L2 0 3313 2991 242 125 21 0 chr1 127987989 127988037 -114676316 + GA-rich Low_complexity Low_complexity 1 49 0 189 346 0 0 chr1 127989373 127989451 -114674902 + L2 LINE L2 2164 2241 -1073 882 213 0 0 chr1 127989498 127989658 -114674695 - FRAM SINE Alu -15 161 2 393 212 59 68 chr1 127989772 127989890 -114674463 - MER91C DNA MER1_type 0 140 24 363 351 61 68 chr1 127990858 127991314 -114673039 - L2 LINE L2 -3 3269 2817 276 331 53 13 chr1 127991438 127991589 -114672764 + L2 LINE L2 3153 3309 -4 914 255 65 42 chr1 127991851 127992282 -114672071 - MLT1J1 LTR MaLR 0 446 6 1891 140 0 14 chr1 127992335 127992628 -114671725 + AluJb SINE Alu 15 303 -9 572 278 83 32 chr1 127992755 127992971 -114671382 - MIR SINE MIR 0 262 36 5005 133 29 1 chr1 127994478 127995347 -114669006 - Ricksha DNA DNA -113 3138 2246 7218 52 1 0 chr1 127995347 127996944 -114667409 - L1PA5 LINE L1 -1 6153 4558 1969 117 4 0 chr1 127996944 127997218 -114667135 - AluY SINE Alu -36 275 1 215 312 21 43 chr1 127998516 127998609 -114665744 - L3b LINE CR1 -316 1267 1177 2455 96 0 0 chr1 127999269 127999572 -114664781 + AluSg SINE Alu 1 303 -7 226 365 40 16 chr1 127999622 127999748 -114664605 + L2 LINE L2 3180 3308 -5 466 216 50 43 chr1 128000379 128000518 -114663835 - MIR SINE MIR 0 262 123 755 279 35 31 chr1 128000654 128000908 -114663445 - MIR SINE MIR 0 262 8 2559 59 0 3 chr1 128001217 128001547 -114662806 + AluY SINE Alu 1 329 0 26 0 0 0 chr1 128002752 128002778 -114661575 + AT_rich Low_complexity Low_complexity 1 26 0 1927 144 20 0 chr1 128003193 128003485 -114660868 + AluSx SINE Alu 12 309 -3 1178 241 0 4 chr1 128003624 128003898 -114660455 - MER82 DNA MER2_type -32 621 349 565 216 7 52 chr1 128003902 128004055 -114660298 + L1MA9 LINE L1 5936 6081 -231 29143 62 8 2 chr1 128004090 128008654 -114655699 + L1PA6 LINE L1 1338 5926 -228 1743 75 0 0 chr1 128008770 128008997 -114655356 - MER9 LTR ERVK -284 227 1 11964 98 2 1 chr1 128008998 128010681 -114653672 - HERVK14 LTR ERVK -4056 1889 205 566 129 20 0 chr1 128010675 128010776 -114653577 - HERVK14 LTR ERVK -5842 103 1 * 1736 64 14 2 chr1 128010776 128011056 -114653297 - LTR14A LTR ERVK 0 344 1 2709 230 22 18 chr1 128011061 128011849 -114652504 + L1MB1 LINE L1 4060 4850 -1296 852 290 61 10 chr1 128011860 128012170 -114652183 - LTR40a LTR ERVL -192 327 2 868 134 7 0 chr1 128012471 128012620 -114651733 - L1PB1 LINE L1 -2 6149 6000 235 152 22 0 chr1 128013035 128013081 -114651272 + MADE1 DNA Mariner 34 80 0 1564 165 39 131 chr1 128013340 128013830 -114650523 + MER65A LTR ERV1 1 445 0 22 0 0 0 chr1 128013887 128013909 -114650444 + AT_rich Low_complexity Low_complexity 1 22 0 709 301 82 3 chr1 128015142 128015424 -114648929 - LTR16A LTR ERVL -8 442 139 2147 102 0 0 chr1 128016190 128016490 -114647863 - AluSc SINE Alu 0 307 8 246 119 24 24 chr1 128017695 128017737 -114646616 - MER5B DNA MER1_type -136 42 1 443 280 39 22 chr1 128018736 128018918 -114645435 - L1ME LINE L1 -2011 4069 3885 2992 155 48 10 chr1 128018931 128019550 -114644803 + L1MB1 LINE L1 5338 5980 -188 254 226 191 0 chr1 128019587 128019702 -114644651 - L1ME LINE L1 -2477 3603 3467 450 323 69 13 chr1 128019751 128019983 -114644370 - L1ME LINE L1 -2634 3446 3202 1043 250 98 13 chr1 128019986 128020585 -114643768 - L1ME LINE L1 -2929 3151 2502 1033 292 108 39 chr1 128020621 128020899 -114643454 - L1ME LINE L1 -3875 2386 2129 2441 66 7 0 chr1 128020899 128021204 -114643149 - AluY SINE Alu -4 307 1 1033 292 108 39 chr1 128021204 128022591 -114641762 - L1ME LINE L1 -4132 2129 558 1869 67 20 4 chr1 128025096 128025349 -114639004 + L1PA4 LINE L1 5897 6153 -2 26 0 0 0 chr1 128025498 128025524 -114638829 + AT_rich Low_complexity Low_complexity 1 26 0 1814 160 5 75 chr1 128027266 128027640 -114636713 - MER7A DNA MER2_type 0 346 1 1289 122 0 0 chr1 128028569 128028741 -114635612 - AluY SINE Alu -13 298 127 305 337 112 39 chr1 128029530 128029735 -114634618 + L2 LINE L2 3004 3223 -49 905 188 63 5 chr1 128030377 128030600 -114633753 + L1MB3 LINE L1 5947 6182 -1 494 304 100 39 chr1 128031219 128031449 -114632904 - MIR SINE MIR -17 245 2 399 328 63 0 chr1 128031482 128031656 -114632697 + MIR SINE MIR 54 238 -24 308 88 29 59 chr1 128033143 128033211 -114631142 + LTR54B LTR ERV1 66 131 -367 1253 127 135 4 chr1 128033211 128033440 -114630913 + MER57B-int LTR ERV1 7279 7537 0 1985 159 113 3 chr1 128033440 128033831 -114630522 + MER57B LTR ERV1 1 434 0 3579 137 5 11 chr1 128033915 128034479 -114629874 + LTR6A LTR ERV1 4 564 0 324 237 43 64 chr1 128036236 128036477 -114627876 + MLT1H LTR MaLR 313 549 0 852 274 53 0 chr1 128037412 128037734 -114626619 - L1M4 LINE L1 -1675 4471 4133 375 213 21 21 chr1 128037738 128037832 -114626521 - LTR45 LTR ERV1 0 525 432 2299 93 13 19 chr1 128037849 128038162 -114626191 + AluY SINE Alu 1 311 0 9773 163 71 18 chr1 128038164 128038588 -114625765 + L1MA3 LINE L1 2964 3364 -2941 2120 127 13 0 chr1 128038588 128038888 -114625465 + AluSx SINE Alu 1 304 -8 9773 163 71 18 chr1 128038888 128040264 -114624089 + L1MA3 LINE L1 3364 4666 -1639 1799 94 35 8 chr1 128040264 128040518 -114623835 - AluY SINE Alu -15 296 36 9773 163 71 18 chr1 128040518 128040943 -114623410 + L1MA3 LINE L1 4666 5067 -1238 1364 211 53 23 chr1 128040943 128041242 -114623111 + AluJb SINE Alu 1 308 -4 9773 163 71 18 chr1 128041242 128041886 -114622467 + L1MA3 LINE L1 5067 6008 -297 2437 169 50 9 chr1 128041886 128042323 -114622030 - MER52A LTR ERV1 0 1755 1301 462 18 0 0 chr1 128044503 128044558 -114619795 + (TG)n Simple_repeat Simple_repeat 1 55 0 1686 138 12 0 chr1 128044686 128044932 -114619421 + AluSx SINE Alu 45 293 -19 1901 119 17 51 chr1 128044988 128045310 -114619043 - AluSp SINE Alu 0 312 1 1210 267 52 52 chr1 128045627 128046203 -114618150 + L1ME2 LINE L1 5455 6030 -134 23440 47 2 0 chr1 128048508 128051582 -114612771 + L1P1 LINE L1 2497 5574 -581 4364 117 61 4 chr1 128051735 128052436 -114611917 + L1MA1 LINE L1 5557 6297 -5 967 211 63 0 chr1 128054581 128054804 -114609549 + L1MCa LINE L1 1333 1569 -4857 567 210 99 22 chr1 128054930 128055111 -114609242 + MLT1B LTR MaLR 1 195 -195 311 136 17 0 chr1 128055111 128055170 -114609183 + CT-rich Low_complexity Low_complexity 1 60 0 258 32 0 0 chr1 128055249 128055280 -114609073 + (CA)n Simple_repeat Simple_repeat 2 32 0 2070 127 3 34 chr1 128055308 128055630 -114608723 + AluSq SINE Alu 1 312 -1 25 31 0 0 chr1 128056517 128056549 -114607804 + AT_rich Low_complexity Low_complexity 1 32 0 2088 135 0 0 chr1 128056598 128056895 -114607458 - AluSx SINE Alu -15 297 1 380 103 23 23 chr1 128056921 128057008 -114607345 + (TA)n Simple_repeat Simple_repeat 1 87 0 248 313 42 7 chr1 128057227 128057371 -114606982 + L1ME LINE L1 5528 5676 -445 21 71 0 0 chr1 128057955 128057997 -114606356 + AT_rich Low_complexity Low_complexity 1 42 0 203 241 0 35 chr1 128058074 128058132 -114606221 - L2 LINE L2 -1 3271 3216 253 136 0 0 chr1 128059279 128059323 -114605030 - L1P LINE L1 -1131 5015 4972 996 185 57 114 chr1 128061852 128062033 -114602320 - LTR49-int LTR ERV1 -1597 4734 4544 1675 186 7 10 chr1 128062033 128062324 -114602029 - AluJb SINE Alu -21 291 2 996 185 57 114 chr1 128062324 128062643 -114601710 - LTR49-int LTR ERV1 -1787 4544 2750 40 21 0 0 chr1 128062669 128062716 -114601637 + AT_rich Low_complexity Low_complexity 1 47 0 2002 153 7 0 chr1 128062747 128063041 -114601312 + AluSx SINE Alu 4 299 -13 1820 187 7 0 chr1 128063149 128063459 -114600894 - AluJb SINE Alu 0 312 1 923 224 76 18 chr1 128063508 128063785 -114600568 - LTR49-int LTR ERV1 -2577 4021 3729 553 206 87 85 chr1 128064039 128064630 -114599723 - LTR49-int LTR ERV1 -2478 3853 3265 2147 111 0 7 chr1 128064630 128064919 -114599434 - AluSq SINE Alu -24 289 3 553 206 87 85 chr1 128064919 128064999 -114599354 - LTR49-int LTR ERV1 -3066 3265 1839 552 194 148 0 chr1 128065008 128065116 -114599237 + FLAM_C SINE Alu 2 125 -18 230 353 139 0 chr1 128065583 128065705 -114598648 + L3 LINE CR1 224 362 -1215 278 329 93 0 chr1 128066180 128066316 -114598037 + MLT1L LTR MaLR 7 155 -460 325 270 122 32 chr1 128066316 128066660 -114597693 - MER20B DNA MER1_type 0 783 409 2898 16 0 6 chr1 128066907 128067227 -114597126 + AluYb8 SINE Alu 1 318 0 585 255 119 17 chr1 128067437 128067672 -114596681 - MER20B DNA MER1_type -406 377 119 2051 154 3 0 chr1 128067943 128068254 -114596099 - AluSx SINE Alu 0 312 1 1669 203 64 3 chr1 128068358 128068703 -114595650 - MER47A DNA MER2_type 0 366 1 183 254 0 0 chr1 128068707 128068770 -114595583 + (TATG)n Simple_repeat Simple_repeat 2 64 0 408 82 0 0 chr1 128068777 128068838 -114595515 + (TG)n Simple_repeat Simple_repeat 1 61 0 230 345 23 0 chr1 128069179 128069266 -114595087 - L1ME LINE L1 -586 5576 5488 735 131 69 29 chr1 128069582 128069757 -114594596 - MER52A LTR ERV1 -569 1186 1005 1311 238 20 15 chr1 128069769 128070277 -114594076 - MER52A LTR ERV1 -1105 650 1 2337 126 15 105 chr1 128070416 128070893 -114593460 - MER57B LTR ERV1 0 434 1 2231 117 7 0 chr1 128071287 128071595 -114592758 - AluSp SINE Alu -3 310 1 704 266 155 46 chr1 128072321 128072825 -114591528 - MLT1H1 LTR MaLR -1 589 1 189 107 0 0 chr1 128073493 128073521 -114590832 + (T)n Simple_repeat Simple_repeat 1 28 0 335 157 138 19 chr1 128073950 128074080 -114590273 - MLT1G1 LTR MaLR 0 595 408 285 338 108 0 chr1 128074308 128074456 -114589897 - MLT1H1 LTR MaLR -389 166 3 899 257 115 45 chr1 128074482 128075262 -114589091 - L1MDa LINE L1 -3212 3328 2469 1680 192 10 7 chr1 128075262 128075570 -114588783 - AluJb SINE Alu -3 309 1 899 257 115 45 chr1 128075570 128075681 -114588672 - L1MDa LINE L1 -4071 2469 2367 1667 175 7 17 chr1 128075681 128075972 -114588381 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr1 128075976 128076002 -114588351 + AT_rich Low_complexity Low_complexity 1 26 0 1190 192 165 18 chr1 128076003 128076336 -114588017 - L1MB2 LINE L1 -7 6164 5783 677 40 79 7 chr1 128076336 128076488 -114587865 + (TA)n Simple_repeat Simple_repeat 2 164 0 1239 212 186 28 chr1 128076488 128076951 -114587402 - L1MB2 LINE L1 -378 5805 5270 3720 222 60 68 chr1 128077976 128078033 -114586320 - L1MB2 LINE L1 -866 5280 5224 1155 163 110 0 chr1 128078033 128078242 -114586111 + MER46A DNA MER2_type 2 233 -3 3720 222 60 68 chr1 128078242 128079049 -114585304 - L1MB2 LINE L1 -922 5224 4412 2008 143 0 7 chr1 128079049 128079349 -114585004 - AluSx SINE Alu -14 298 1 3720 222 60 68 chr1 128079349 128079410 -114584943 - L1MB2 LINE L1 -1734 4412 4352 1832 167 0 50 chr1 128079410 128079733 -114584620 - AluSx SINE Alu -5 307 1 3720 222 60 68 chr1 128079733 128080162 -114584191 - L1MB2 LINE L1 -1794 4352 3935 1711 245 65 15 chr1 128080157 128080813 -114583540 - L1MB2 LINE L1 -2468 3678 2990 * 237 203 34 0 chr1 128080816 128080875 -114583478 - L1MB2 LINE L1 -3096 3050 2990 244 212 30 0 chr1 128080878 128080944 -114583409 - L1MB2 LINE L1 -3096 3050 2983 * 418 227 31 8 chr1 128080940 128081068 -114583285 - L1MB2 LINE L1 -3096 3050 2920 2157 113 0 41 chr1 128081199 128081517 -114582836 + AluSx SINE Alu 1 305 -7 37 0 0 0 chr1 128081642 128081679 -114582674 + AT_rich Low_complexity Low_complexity 1 37 0 2122 140 0 0 chr1 128081679 128081986 -114582367 + AluSx SINE Alu 2 308 -4 680 236 47 24 chr1 128083173 128083385 -114580968 - MIR SINE MIR 0 262 46 2110 125 0 3 chr1 128083534 128083822 -114580531 - AluSx SINE Alu -24 288 2 230 280 224 56 chr1 128083909 128084034 -114580319 - L3 LINE CR1 -7 1570 1425 713 199 15 0 chr1 128084317 128084448 -114579905 - FLAM_C SINE Alu 0 133 1 246 308 66 0 chr1 128084727 128084818 -114579535 + MIR SINE MIR 70 166 -96 443 139 56 0 chr1 128084820 128084892 -114579461 + AluJ/FLAM SINE Alu 3 78 -234 814 248 77 5 chr1 128084993 128085215 -114579138 + MSTA LTR MaLR 131 368 -60 1377 172 0 0 chr1 128085244 128085482 -114578871 + MSTA-int LTR MaLR 13 250 -1401 1365 167 8 12 chr1 128085479 128085731 -114578622 + MSTA-int LTR MaLR 1401 1651 0 * 888 250 20 37 chr1 128085731 128085975 -114578378 + MSTA LTR MaLR 1 240 -188 229 235 24 35 chr1 128086016 128086117 -114578236 - HSAT5 Satellite Satellite -1 99 1 360 211 0 12 chr1 128086346 128086445 -114577908 - HSAT5 Satellite Satellite -3 97 1 569 173 12 30 chr1 128086606 128086892 -114577461 - HSAT5 Satellite Satellite -1 280 1 782 102 4 3 chr1 128087255 128091916 -114572437 + CER Satellite Satellite 1 4665 -6 782 197 7 0 chr1 128091907 128092044 -114572309 + MLT1A1 LTR MaLR 226 363 -2 3808 190 104 79 chr1 128092069 128093513 -114570840 + L1MCa LINE L1 726 2205 -4221 264 188 52 52 chr1 128093512 128093608 -114570745 + L1MCa LINE L1 2104 2199 -4227 * 1657 149 56 27 chr1 128093612 128093986 -114570367 + L1MCa LINE L1 2104 2488 -3938 10751 163 42 32 chr1 128093986 128094702 -114569651 + Tigger1 DNA MER2_type 1 709 -1709 2322 100 0 10 chr1 128094702 128095012 -114569341 - AluSp SINE Alu -6 307 1 10751 163 42 32 chr1 128095012 128095868 -114568485 + Tigger1 DNA MER2_type 709 1600 -818 1942 135 26 10 chr1 128095868 128096171 -114568182 + AluSg SINE Alu 1 308 -2 10751 163 42 32 chr1 128096171 128096668 -114567685 + Tigger1 DNA MER2_type 1600 2091 -327 11489 86 1 14 chr1 128096772 128098300 -114566053 + HERVK9 LTR ERVK 1278 2786 -3130 1815 78 0 0 chr1 128098300 128098530 -114565823 + HERVK9 LTR ERVK 3711 3940 -1976 2054 135 3 12 chr1 128098531 128098856 -114565497 + HERVK9 LTR ERVK 4583 4904 -1012 1803 77 0 0 chr1 128098891 128099111 -114565242 + AluY SINE Alu 1 220 -91 2136 116 13 0 chr1 128099227 128099528 -114564825 + AluSp SINE Alu 1 305 -8 260 267 38 48 chr1 128099923 128100028 -114564325 + LTR49-int LTR ERV1 2417 2520 -3811 949 201 40 86 chr1 128100188 128100235 -114564118 + LTR57-int LTR ERVL 311 359 -4984 393 22 0 0 chr1 128100235 128100281 -114564072 + (CA)n Simple_repeat Simple_repeat 1 46 0 2066 138 0 0 chr1 128100281 128100570 -114563783 - AluSx SINE Alu -23 289 1 949 201 40 86 chr1 128100570 128100587 -114563766 + LTR57-int LTR ERVL 358 374 -4969 1997 171 0 0 chr1 128100587 128100892 -114563461 - AluSx SINE Alu -7 305 1 949 201 40 86 chr1 128100892 128101103 -114563250 + LTR57-int LTR ERVL 374 575 -4768 1851 171 3 10 chr1 128101130 128101435 -114562918 - AluJb SINE Alu -7 305 3 2351 147 32 9 chr1 128101445 128101888 -114562465 + LTR49-int LTR ERV1 1010 1462 -6658 297 185 0 0 chr1 128101914 128101968 -114562385 - Alu SINE Alu -14 288 235 2080 141 57 4 chr1 128102672 128103071 -114561282 - LTR49-int LTR ERV1 -433 5696 4427 5355 62 5 0 chr1 128103090 128103722 -114560631 - L1PA7 LINE L1 -15 6454 5820 30085 107 29 3 chr1 128103730 128108198 -114556155 - L1PA7 LINE L1 -743 5718 1135 672 109 0 0 chr1 128108174 128108266 -114556087 - L1PA7 LINE L1 -6365 96 5 * 2399 146 32 15 chr1 128108269 128108681 -114555672 - LTR49-int LTR ERV1 -1013 5318 4900 396 265 59 15 chr1 128158874 128159010 -114505343 + MIR SINE MIR 111 252 -10 207 162 0 0 chr1 128159291 128159328 -114505025 + T-rich Low_complexity Low_complexity 1 37 0 884 244 120 50 chr1 128159576 128160025 -114504328 + MLT1H LTR MaLR 3 529 -13 294 148 0 0 chr1 128160659 128160713 -114503640 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 2405 80 0 0 chr1 128161066 128161367 -114502986 - AluY SINE Alu -10 301 1 291 324 75 80 chr1 128161386 128161772 -114502581 + L2 LINE L2 2578 2961 -353 3217 173 33 74 chr1 128162032 128162751 -114501602 - LTR8 LTR ERV1 -1 690 1 638 241 31 157 chr1 128162794 128162861 -114501492 - MIR SINE MIR -1 261 187 2590 53 0 0 chr1 128162861 128163161 -114501192 + L1PA5 LINE L1 5855 6154 0 638 241 31 157 chr1 128163161 128163379 -114500974 - MIR SINE MIR -75 187 12 1635 214 136 5 chr1 128164555 128164990 -114499363 - Charlie4a DNA MER1_type -16 492 1 1126 158 0 0 chr1 128164995 128165166 -114499187 + AluSg/x SINE Alu 133 303 -7 255 291 0 13 chr1 128166328 128166407 -114497946 - MER116 DNA Mariner -2 78 1 1940 156 61 45 chr1 128166822 128167181 -114497172 - MLT1A1 LTR MaLR 0 365 1 217 353 161 18 chr1 128167273 128167664 -114496689 + L2 LINE L2 1714 2160 -1154 29 60 0 0 chr1 128167935 128167985 -114496368 + AT_rich Low_complexity Low_complexity 1 50 0 42 20 0 0 chr1 128169123 128169172 -114495181 + AT_rich Low_complexity Low_complexity 1 49 0 245 284 71 71 chr1 128169177 128169332 -114495021 - L1ME3A LINE L1 -51 6119 5965 2101 110 41 3 chr1 128169357 128169647 -114494706 - AluSq SINE Alu -12 301 1 687 266 88 44 chr1 128169697 128169994 -114494359 - L1ME3A LINE L1 -208 5962 5653 2251 106 7 0 chr1 128170182 128170475 -114493878 + AluSx SINE Alu 1 295 -17 456 362 147 0 chr1 128172698 128172977 -114491376 + L2 LINE L2 2949 3268 -4 414 263 65 17 chr1 128173127 128173257 -114491096 - MIR SINE MIR -69 139 19 499 308 36 5 chr1 128174241 128174436 -114489917 - MIR SINE MIR -34 228 28 917 133 7 0 chr1 128174574 128174709 -114489644 - AluJo SINE Alu -176 136 1 39 50 0 0 chr1 128175061 128175121 -114489232 + AT_rich Low_complexity Low_complexity 1 60 0 556 284 53 37 chr1 128175919 128176109 -114488244 + MIR3 SINE MIR 3 195 -13 414 0 0 0 chr1 128176187 128176233 -114488120 + (TG)n Simple_repeat Simple_repeat 1 46 0 30 27 0 0 chr1 128176675 128176712 -114487641 + AT_rich Low_complexity Low_complexity 1 37 0 326 287 90 60 chr1 128177717 128177884 -114486469 - MIR SINE MIR -2 260 89 296 94 19 0 chr1 128178190 128178243 -114486110 + (TA)n Simple_repeat Simple_repeat 1 54 0 1643 184 14 3 chr1 128178580 128178873 -114485480 + AluJo SINE Alu 1 296 -16 220 378 0 0 chr1 128181213 128181287 -114483066 + MIR SINE MIR 70 143 -65 433 302 178 6 chr1 128181571 128181892 -114482461 + L2 LINE L2 2123 2498 -816 497 353 28 18 chr1 128181918 128182201 -114482152 + L2 LINE L2 2804 3089 -183 2172 122 3 0 chr1 128182266 128182570 -114481783 + AluSx SINE Alu 1 305 -7 280 162 29 73 chr1 128182760 128182828 -114481525 + L2 LINE L2 3244 3308 -5 598 235 77 110 chr1 128183191 128183527 -114480826 + L3 LINE CR1 1232 1556 -21 284 333 149 0 chr1 128184448 128184589 -114479764 + L3b LINE CR1 1388 1549 -34 273 250 69 0 chr1 128184763 128184835 -114479518 - L2 LINE L2 -50 3222 3146 512 303 92 35 chr1 128184845 128185248 -114479105 + L2 LINE L2 2022 2447 -867 714 275 48 13 chr1 128185264 128185419 -114478934 - Charlie8 DNA MER1_type -93 248 81 2268 110 3 0 chr1 128185419 128185720 -114478633 - AluSx SINE Alu -10 302 1 714 275 48 13 chr1 128185720 128185793 -114478560 - Charlie8 DNA MER1_type -260 81 12 2322 84 0 0 chr1 128186198 128186526 -114477827 + AluSx SINE Alu 1 328 0 2295 125 0 0 chr1 128187080 128187391 -114476962 + AluSx SINE Alu 1 311 -1 460 261 240 20 chr1 128188954 128189160 -114475193 + MIR SINE MIR 3 251 -11 222 227 0 0 chr1 128189196 128189240 -114475113 + (CATA)n Simple_repeat Simple_repeat 4 47 0 215 338 68 47 chr1 128189276 128189424 -114474929 - L2 LINE L2 -48 3224 3074 487 335 140 51 chr1 128189607 128189801 -114474552 - L2 LINE L2 -456 2858 2683 2286 91 0 3 chr1 128189801 128190125 -114474228 + AluSp SINE Alu 1 323 0 487 335 140 51 chr1 128190125 128191079 -114473274 - L2 LINE L2 -631 2683 1606 1078 8 0 15 chr1 128191130 128191263 -114473090 + (GAAA)n Simple_repeat Simple_repeat 4 134 0 281 118 20 0 chr1 128191290 128191341 -114473012 + GA-rich Low_complexity Low_complexity 1 52 0 340 264 314 8 chr1 128191398 128191640 -114472713 + L2 LINE L2 2949 3264 -8 1462 187 95 3 chr1 128192111 128192395 -114471958 + AluJb SINE Alu 1 310 -2 464 175 10 0 chr1 128192402 128192499 -114471854 + GA-rich Low_complexity Low_complexity 2 99 0 240 191 88 44 chr1 128192586 128192654 -114471699 + L2 LINE L2 3200 3270 -2 477 294 98 38 chr1 128193653 128193888 -114470465 - MIR SINE MIR -5 257 9 226 193 68 80 chr1 128194328 128194416 -114469937 - L2 LINE L2 -44 3228 3142 269 347 53 0 chr1 128194472 128194567 -114469786 + L3 LINE CR1 1477 1576 -1 184 154 292 15 chr1 128194973 128195038 -114469315 - L2 LINE L2 -1 3312 3230 227 182 0 0 chr1 128195404 128195448 -114468905 + (TG)n Simple_repeat Simple_repeat 2 45 0 232 273 61 0 chr1 128196153 128196219 -114468134 + MIR SINE MIR 37 106 -156 203 333 60 30 chr1 128196231 128196399 -114467954 - MIR SINE MIR -10 252 80 2525 53 0 10 chr1 128197546 128197847 -114466506 - AluY SINE Alu -12 299 2 286 261 45 11 chr1 128198674 128198762 -114465591 - L2 LINE L2 -25 3247 3157 220 307 105 18 chr1 128198751 128198865 -114465488 - L3 LINE CR1 -541 1036 913 * 1102 212 4 26 chr1 128199127 128199353 -114465000 + MER58A DNA MER1_type 1 221 -3 343 320 69 18 chr1 128199755 128199937 -114464416 - MIR SINE MIR -65 197 6 705 228 0 16 chr1 128200262 128200389 -114463964 - FLAM_A SINE Alu -8 125 1 544 240 1 89 chr1 128202938 128203067 -114461286 - L1M4 LINE L1 -1068 5078 4978 3595 149 19 41 chr1 128203067 128203757 -114460596 + L1MB3 LINE L1 5508 6182 -1 544 240 1 89 chr1 128203757 128203847 -114460506 - L1M4 LINE L1 -1168 4978 4882 1840 236 129 17 chr1 128203955 128204075 -114460278 + L1ME3 LINE L1 3803 3908 -2238 2025 145 0 31 chr1 128204075 128204392 -114459961 - AluSx SINE Alu -5 307 1 1840 236 129 17 chr1 128204392 128204977 -114459376 + L1ME3 LINE L1 3908 4587 -1559 959 175 34 51 chr1 128204978 128205206 -114459147 + MER20 DNA MER1_type 1 219 0 3476 209 142 38 chr1 128205207 128205659 -114458694 + L1ME3 LINE L1 4582 4986 -1176 1614 176 3 30 chr1 128205659 128205955 -114458398 + AluJb SINE Alu 1 288 -24 3476 209 142 38 chr1 128205955 128206167 -114458186 + L1ME3 LINE L1 4986 5175 -987 1545 260 44 35 chr1 128206167 128206621 -114457732 - LTR16B LTR ERVL -2 462 5 3476 209 142 38 chr1 128206621 128207352 -114457001 + L1ME3 LINE L1 5175 6155 -7 231 293 81 20 chr1 128207506 128207605 -114456748 - L2 LINE L2 0 3272 3168 2221 160 106 106 chr1 128207713 128208233 -114456120 - MLT2B1 LTR ERVL 0 520 1 832 253 45 5 chr1 128209334 128209532 -114454821 + MIR SINE MIR 12 217 -45 1816 197 33 14 chr1 128210027 128210393 -114453960 - MLT1A2 LTR MaLR 0 374 2 2509 84 0 0 chr1 128211654 128211965 -114452388 + AluSx SINE Alu 2 312 0 1116 318 214 36 chr1 128211968 128212641 -114451712 + L3 LINE CR1 352 904 -673 1605 94 0 0 chr1 128212641 128212842 -114451511 + AluSg/x SINE Alu 100 300 -12 1116 318 214 36 chr1 128212842 128213208 -114451145 + L3 LINE CR1 904 1576 -1 715 305 130 38 chr1 128213197 128213764 -114450589 - L2 LINE L2 0 3313 2696 * 2232 124 3 0 chr1 128214080 128214386 -114449967 + AluSx SINE Alu 1 307 -5 239 220 64 55 chr1 128214767 128214876 -114449477 - L1ME4a LINE L1 -52 6069 5960 242 65 0 0 chr1 128214984 128215015 -114449338 - L1ME4a LINE L1 -243 5923 5893 1706 175 24 0 chr1 128215054 128215351 -114449002 + AluJb SINE Alu 2 305 -7 2829 182 80 62 chr1 128215530 128215844 -114448509 + L1ME1 LINE L1 5351 5658 -508 2305 119 0 0 chr1 128215844 128216155 -114448198 + AluSx SINE Alu 1 311 -1 2829 182 80 62 chr1 128216155 128216588 -114447765 + L1ME1 LINE L1 5658 6112 -54 2430 83 3 0 chr1 128216589 128216891 -114447462 + AluSx SINE Alu 1 303 -9 2104 106 3 58 chr1 128216895 128217224 -114447129 + AluSx SINE Alu 1 311 -1 2376 55 3 10 chr1 128217707 128218023 -114446330 + AluSx SINE Alu 1 314 0 393 246 41 36 chr1 128218144 128218311 -114446042 + MIR SINE MIR 48 218 -44 1507 184 0 75 chr1 128218765 128219085 -114445268 + AluJo SINE Alu 3 298 -14 1792 171 0 3 chr1 128219127 128219420 -114444933 - AluJb SINE Alu -20 292 1 584 190 7 29 chr1 128219605 128219742 -114444611 - L1MB8 LINE L1 -1 6177 6044 34 42 0 0 chr1 128219944 128219992 -114444361 + AT_rich Low_complexity Low_complexity 1 48 0 951 169 0 13 chr1 128220070 128220224 -114444129 - FRAM SINE Alu -21 155 4 21 0 0 0 chr1 128220231 128220252 -114444101 + AT_rich Low_complexity Low_complexity 1 21 0 237 209 182 45 chr1 128222747 128222857 -114441496 + MIR3 SINE MIR 71 195 -13 1273 137 0 10 chr1 128223121 128223318 -114441035 + AluJb SINE Alu 1 195 -117 22 35 0 0 chr1 128223910 128223939 -114440414 + AT_rich Low_complexity Low_complexity 1 29 0 1066 240 77 47 chr1 128225272 128225634 -114438719 - L1ME2 LINE L1 -23 6141 5769 1868 198 73 13 chr1 128225691 128226145 -114438208 - L1MD2 LINE L1 0 6359 5879 235 147 93 40 chr1 128226132 128226207 -114438146 - L1MD2 LINE L1 -815 5331 5253 * 1167 107 0 107 chr1 128226209 128226414 -114437939 + AluSx SINE Alu 1 183 -129 362 200 50 20 chr1 128226420 128226520 -114437833 - L1MD2 LINE L1 -1022 5124 5022 207 0 0 0 chr1 128226522 128226545 -114437808 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1584 163 35 39 chr1 128226549 128226832 -114437521 - AluSx SINE Alu -30 282 1 1039 219 115 66 chr1 128226858 128227356 -114436997 - L1MD2 LINE L1 -1112 5034 4471 2171 64 4 0 chr1 128227356 128227620 -114436733 + AluY SINE Alu 27 291 -20 1039 219 115 66 chr1 128227620 128227813 -114436540 - L1MD2 LINE L1 -1675 4471 4289 943 150 0 0 chr1 128228005 128228138 -114436215 - FLAM_C SINE Alu 0 133 1 219 211 96 106 chr1 128228203 128228307 -114436046 - MIR SINE MIR -128 134 32 2161 131 0 7 chr1 128228697 128229003 -114435350 - AluSx SINE Alu -8 304 1 2116 117 27 3 chr1 128229250 128229550 -114434803 + AluSx SINE Alu 1 307 -5 2318 87 0 0 chr1 128230269 128230558 -114433795 + L1PA5 LINE L1 5866 6154 0 331 353 63 17 chr1 128230884 128231184 -114433169 - L1M4 LINE L1 -894 5252 4939 495 296 98 25 chr1 128231537 128231740 -114432613 - MIR SINE MIR -18 244 27 185 250 0 45 chr1 128232102 128232146 -114432207 + MIR SINE MIR 204 245 -17 * 241 163 47 0 chr1 128232112 128232155 -114432198 + L2 LINE L2 3216 3260 -12 1650 179 134 0 chr1 128232223 128232530 -114431823 - MER7A DNA MER2_type 0 346 1 230 264 0 54 chr1 128232969 128233098 -114431255 + L1MC4a LINE L1 3066 3187 -2959 661 273 66 61 chr1 128233158 128233569 -114430784 + L1MC4a LINE L1 5648 6060 -1748 342 80 0 0 chr1 128233848 128233898 -114430455 - MADE1 DNA Mariner 0 80 31 1414 222 66 90 chr1 128234269 128234419 -114429934 - L1MC5 LINE L1 -112 7849 7697 2574 60 0 0 chr1 128234419 128234719 -114429634 - AluSc SINE Alu -9 300 1 1414 222 66 90 chr1 128234719 128234754 -114429599 - L1MC5 LINE L1 -264 7697 7663 833 211 45 6 chr1 128234754 128234910 -114429443 - FAM SINE Alu -13 162 1 1414 222 66 90 chr1 128234910 128235404 -114428949 - L1MC5 LINE L1 -298 7663 7185 995 144 89 0 chr1 128236547 128236795 -114427558 + L1PA16 LINE L1 5857 6163 -3 1720 130 85 60 chr1 128238880 128239211 -114425142 + MER44D DNA MER2_type 1 609 0 459 260 10 0 chr1 128239320 128239424 -114424929 + L2 LINE L2 3163 3267 -5 2189 124 7 0 chr1 128240950 128241256 -114423097 + AluSx SINE Alu 1 308 -4 702 314 23 72 chr1 128241373 128241517 -114422836 - L2 LINE L2 -2684 630 481 1266 186 19 5 chr1 128241517 128241732 -114422621 - MER20 DNA MER1_type 0 219 2 2296 101 0 10 chr1 128241738 128242045 -114422308 + AluSg SINE Alu 1 304 -6 702 314 23 72 chr1 128242045 128242240 -114422113 - L2 LINE L2 -2838 476 301 2219 105 3 25 chr1 128243011 128243325 -114421028 + AluSg SINE Alu 1 307 -3 803 172 97 0 chr1 128245667 128245812 -114418541 - FRAM SINE Alu -14 162 4 1963 129 3 23 chr1 128247588 128247890 -114416463 - AluJo SINE Alu -16 296 1 332 243 192 69 chr1 128250169 128250332 -114414021 + MIR SINE MIR 7 187 -62 2406 90 0 7 chr1 128250675 128250985 -114413368 + AluSx SINE Alu 1 308 -4 310 293 20 73 chr1 128251548 128251698 -114412655 + MIR SINE MIR 23 164 -98 663 217 96 0 chr1 128252167 128252333 -114412020 - MIR SINE MIR -2 260 79 548 282 130 58 chr1 128252338 128252511 -114411842 - LTR67 LTR ERVL -8 549 390 2285 96 0 7 chr1 128252511 128252814 -114411539 - AluSq SINE Alu -12 301 1 548 282 130 58 chr1 128252814 128253072 -114411281 - LTR67 LTR ERVL -167 390 87 2583 153 102 40 chr1 128253148 128253677 -114410676 - MER68 LTR ERV1 0 562 1 1812 151 17 7 chr1 128254722 128255013 -114409340 - AluJb SINE Alu -18 294 1 527 221 30 15 chr1 128255212 128255343 -114409010 + FLAM_A SINE Alu 1 133 0 2613 63 0 0 chr1 128255461 128255764 -114408589 + AluY SINE Alu 1 303 -8 670 169 32 16 chr1 128256340 128256464 -114407889 + FLAM_C SINE Alu 8 133 -10 1858 144 4 0 chr1 128257772 128258035 -114406318 + AluSx SINE Alu 1 264 -48 184 102 41 41 chr1 128258144 128258193 -114406160 + T-rich Low_complexity Low_complexity 3 51 0 25 31 0 0 chr1 128258232 128258264 -114406089 + AT_rich Low_complexity Low_complexity 1 32 0 294 29 0 0 chr1 128258748 128258783 -114405570 + (TG)n Simple_repeat Simple_repeat 2 36 0 2241 104 3 3 chr1 128259796 128260093 -114404260 - AluSx SINE Alu -15 297 1 185 341 18 78 chr1 128260512 128260679 -114403674 + L2 LINE L2 3116 3272 0 2464 57 0 3 chr1 128260756 128261054 -114403299 + AluY SINE Alu 1 297 -14 257 226 24 12 chr1 128261692 128261776 -114402577 + (TA)n Simple_repeat Simple_repeat 2 86 0 1843 173 0 10 chr1 128261905 128262212 -114402141 + AluJo SINE Alu 1 304 -8 336 256 11 0 chr1 128266688 128266778 -114397575 - MIR3 SINE MIR -10 198 108 385 346 88 3 chr1 128267346 128267759 -114396594 - L2 LINE L2 -195 3077 2593 26 30 0 0 chr1 128268216 128268249 -114396104 + AT_rich Low_complexity Low_complexity 1 33 0 2366 99 0 0 chr1 128268875 128269177 -114395176 - AluSq SINE Alu -11 302 1 326 262 27 67 chr1 128270805 128270954 -114393399 - MIR3 SINE MIR -5 203 61 578 204 70 32 chr1 128271124 128271281 -114393072 - MER58C DNA MER1_type -44 171 9 1652 187 194 7 chr1 128271682 128272125 -114392228 - L1MC4 LINE L1 -1 8041 7516 411 323 24 40 chr1 128272128 128272376 -114391977 + L2 LINE L2 1687 1930 -1384 182 330 60 10 chr1 128272448 128272548 -114391805 + L2 LINE L2 2228 2332 -982 400 313 111 40 chr1 128273092 128273443 -114390910 + L2 LINE L2 2897 3272 0 2065 151 0 0 chr1 128274359 128274658 -114389695 + AluJo SINE Alu 1 299 -13 278 214 62 14 chr1 128275201 128275346 -114389007 + (CAATA)n Simple_repeat Simple_repeat 4 155 0 913 233 65 110 chr1 128275359 128275822 -114388531 + MLT1J2 LTR MaLR 1 442 -8 205 325 16 65 chr1 128276092 128276170 -114388183 + MIR SINE MIR 28 99 -163 2563 64 0 16 chr1 128276170 128276484 -114387869 + AluSc SINE Alu 1 309 0 205 325 16 65 chr1 128276484 128276528 -114387825 + MIR SINE MIR 99 144 -118 265 240 106 39 chr1 128276683 128276787 -114387566 + MIR SINE MIR 57 167 -95 1940 132 4 0 chr1 128277933 128278205 -114386148 + AluSx SINE Alu 1 273 -39 399 256 30 23 chr1 128278963 128279096 -114385257 - L2 LINE L2 -8 3305 3172 722 258 163 22 chr1 128280230 128280380 -114383973 - L2 LINE L2 -1 3312 3184 1478 143 52 52 chr1 128280380 128280667 -114383686 + AluJb SINE Alu 21 307 -5 722 258 163 22 chr1 128280667 128281065 -114383288 - L2 LINE L2 -129 3184 2687 796 252 50 0 chr1 128281074 128281296 -114383057 - L2 LINE L2 -1358 1956 1724 1800 157 64 9 chr1 128281296 128281642 -114382711 + MLT1B LTR MaLR 30 390 0 1358 258 207 5 chr1 128281706 128282272 -114382081 - L2 LINE L2 -1695 1619 940 21 36 0 0 chr1 128282981 128283009 -114381344 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 128283112 128283142 -114381211 + AT_rich Low_complexity Low_complexity 1 30 0 278 240 0 0 chr1 128283601 128283676 -114380677 + MIR SINE MIR 151 225 -37 1169 153 41 0 chr1 128283678 128283874 -114380479 - MLT1B LTR MaLR 0 390 187 861 201 3 64 chr1 128284357 128284574 -114379779 - MLT1B LTR MaLR -181 193 1 306 0 0 0 chr1 128285079 128285113 -114379240 + (TG)n Simple_repeat Simple_repeat 2 35 0 2342 81 3 7 chr1 128285856 128286153 -114378200 - AluSq SINE Alu -17 296 1 803 172 97 0 chr1 128287077 128287222 -114377131 - FRAM SINE Alu -14 162 4 1963 129 3 23 chr1 128288997 128289299 -114375054 - AluJo SINE Alu -16 296 1 188 379 58 52 chr1 128292205 128292553 -114371800 + L2 LINE L2 2297 2646 -668 285 284 0 12 chr1 128292693 128292774 -114371579 + L2 LINE L2 3232 3311 -2 3070 158 36 18 chr1 128293623 128294173 -114370180 - L1MB2 LINE L1 -2 6169 5610 3018 104 250 0 chr1 128294229 128294717 -114369636 - LTR12 LTR ERV1 -73 641 32 1621 156 32 53 chr1 128294717 128295095 -114369258 - L1MB2 LINE L1 -528 5643 5274 409 183 0 2 chr1 128295197 128295264 -114369089 + MLT1C LTR MaLR 30 95 -295 266 189 0 19 chr1 128295264 128295317 -114369036 + LTR30 LTR ERV1 1 52 -670 1572 70 280 198 chr1 128295317 128295806 -114368547 + LTR12 LTR ERV1 53 581 -133 1712 171 104 20 chr1 128295807 128295912 -114368441 + MLT1C LTR MaLR 94 189 -278 225 0 0 0 chr1 128295912 128295937 -114368416 + (CA)n Simple_repeat Simple_repeat 2 26 0 1712 171 104 20 chr1 128295937 128296176 -114368177 + MLT1C LTR MaLR 189 467 0 447 351 35 17 chr1 128296834 128297008 -114367345 - L2 LINE L2 -6 3266 3090 1924 84 0 0 chr1 128297028 128297265 -114367088 + AluSq SINE Alu 1 237 -76 2448 78 3 0 chr1 128298317 128298613 -114365740 - AluSx SINE Alu -15 297 1 575 268 44 6 chr1 128298715 128298898 -114365455 - MIR SINE MIR -70 192 3 2228 128 0 0 chr1 128299388 128299700 -114364653 + AluSx SINE Alu 1 312 0 459 281 7 37 chr1 128300348 128300483 -114363870 + MER117 DNA MER1_type 4 134 -63 1272 160 46 104 chr1 128300483 128300790 -114363563 - AluJb SINE Alu -3 309 21 2351 101 0 3 chr1 128300818 128301124 -114363229 - AluSx SINE Alu -2 310 6 1766 184 13 7 chr1 128301151 128301461 -114362892 - AluJo SINE Alu 0 312 1 598 298 108 41 chr1 128301641 128301691 -114362662 + L3 LINE CR1 1083 1128 -449 833 220 147 0 chr1 128301691 128301882 -114362471 - MER20 DNA MER1_type 0 219 1 598 298 108 41 chr1 128301882 128302126 -114362227 + L3 LINE CR1 1128 1397 -180 494 295 55 16 chr1 128302383 128302566 -114361787 - MIR SINE MIR -70 192 3 920 165 0 0 chr1 128303706 128303839 -114360514 + FLAM_C SINE Alu 1 133 0 195 271 0 0 chr1 128305821 128305869 -114358484 + L2 LINE L2 3222 3269 -3 310 293 80 87 chr1 128306286 128306586 -114357767 + L1MEd LINE L1 11 308 -5811 4428 112 8 18 chr1 128308012 128308628 -114355725 + MER4B LTR ERV1 1 610 0 715 138 52 17 chr1 128309313 128309429 -114354924 + FLAM_C SINE Alu 3 122 -21 2055 113 3 73 chr1 128309572 128309900 -114354453 + AluJb SINE Alu 1 305 -7 186 412 0 24 chr1 128310183 128310268 -114354085 + L2 LINE L2 3104 3186 -86 222 206 0 0 chr1 128310390 128310463 -114353890 + A-rich Low_complexity Low_complexity 1 73 0 228 170 0 0 chr1 128310781 128310834 -114353519 + GA-rich Low_complexity Low_complexity 2 54 0 1686 262 64 25 chr1 128312328 128312904 -114351449 + L1M3a LINE L1 1533 2312 -5174 * 2855 263 27 11 chr1 128312886 128313939 -114350414 + L1M3a LINE L1 302 1393 -4572 1436 164 3 88 chr1 128313939 128314090 -114350263 + AluJo SINE Alu 1 115 -197 2134 102 7 0 chr1 128314090 128314375 -114349978 + AluSp SINE Alu 23 309 -4 1436 164 3 88 chr1 128314375 128314528 -114349825 + AluJo SINE Alu 115 279 -33 2260 254 57 28 chr1 128314553 128315469 -114348884 + L1M3a LINE L1 2586 3571 -3994 1516 171 64 64 chr1 128315469 128315813 -114348540 - MER2 DNA MER2_type 0 344 1 2260 254 57 28 chr1 128315813 128316359 -114347994 + L1M3a LINE L1 3571 4100 -3465 * 6024 155 17 19 chr1 128316354 128317551 -114346802 + L1MA9 LINE L1 4905 6103 -209 1995 118 18 0 chr1 128317551 128317870 -114346483 + AluSx SINE Alu 1 324 0 6024 155 17 19 chr1 128317870 128318080 -114346273 + L1MA9 LINE L1 6103 6312 0 978 218 85 93 chr1 128318236 128318440 -114345913 + L1ME4a LINE L1 5527 5731 -390 1481 216 0 4 chr1 128318440 128318718 -114345635 + AluJo SINE Alu 5 281 -31 978 218 85 93 chr1 128318718 128318971 -114345382 + L1ME4a LINE L1 5731 5980 -141 189 0 0 0 chr1 128318971 128318992 -114345361 + (GA)n Simple_repeat Simple_repeat 2 22 0 978 218 85 93 chr1 128318992 128319121 -114345232 + L1ME4a LINE L1 5980 6109 -12 2559 99 12 79 chr1 128319956 128320360 -114343993 + MER51B LTR ERV1 1 377 0 342 54 54 54 chr1 128321841 128321897 -114342456 - L1MC1 LINE L1 -1 6332 6277 284 268 0 28 chr1 128322041 128322112 -114342241 + MER106B DNA MER1_type 5 73 -986 1045 166 0 0 chr1 128322125 128322282 -114342071 - FRAM SINE Alu -20 156 1 433 176 221 15 chr1 128322282 128322332 -114342021 + MER106B DNA MER1_type 896 934 -125 590 60 12 0 chr1 128322332 128322415 -114341938 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 433 176 221 15 chr1 128322415 128322500 -114341853 + MER106B DNA MER1_type 934 1059 0 2274 119 0 0 chr1 128322684 128323027 -114341326 + AluSq SINE Alu 1 343 0 387 105 0 0 chr1 128323082 128323139 -114341214 + (TG)n Simple_repeat Simple_repeat 2 58 0 1202 92 9 116 chr1 128323233 128323560 -114340793 + AluSg SINE Alu 1 292 -18 358 315 23 130 chr1 128323583 128324015 -114340338 + L2 LINE L2 2849 3234 -38 202 29 57 0 chr1 128324473 128324508 -114339845 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 250 186 68 0 chr1 128324534 128324593 -114339760 - MIR SINE MIR -71 191 129 2209 91 3 10 chr1 128325413 128325711 -114338642 + AluSq SINE Alu 1 296 -17 183 344 0 0 chr1 128325762 128325823 -114338530 - L2 LINE L2 -660 2654 2594 306 0 0 0 chr1 128326454 128326488 -114337865 + (CA)n Simple_repeat Simple_repeat 2 35 0 859 201 3 64 chr1 128326993 128327210 -114337143 + MLT1B LTR MaLR 1 193 -181 1168 162 30 0 chr1 128327692 128327889 -114336464 + MLT1B LTR MaLR 188 390 0 301 240 0 0 chr1 128327891 128327966 -114336387 - MIR SINE MIR -37 225 151 23 33 0 0 chr1 128328425 128328455 -114335898 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 128328558 128328586 -114335767 + AT_rich Low_complexity Low_complexity 1 28 0 373 315 69 0 chr1 128329237 128329367 -114334986 + MIR SINE MIR 20 158 -104 1766 158 14 34 chr1 128329564 128329861 -114334492 - AluJo SINE Alu -21 291 1 239 352 19 9 chr1 128332147 128332252 -114332101 + MIR3 SINE MIR 102 207 -1 294 188 0 0 chr1 128332470 128332518 -114331835 - L2 LINE L2 -3 3269 3222 870 200 59 64 chr1 128333199 128333419 -114330934 - MER20 DNA MER1_type 0 219 1 1856 148 7 10 chr1 128334651 128334941 -114329412 - AluJb SINE Alu -23 289 1 699 203 37 11 chr1 128337060 128337247 -114327106 - L1M4 LINE L1 -758 5388 5197 194 314 0 57 chr1 128337352 128337422 -114326931 - L2 LINE L2 0 3272 3207 350 222 121 0 chr1 128337877 128337976 -114326377 - MER117 DNA MER1_type -86 111 1 22 0 0 0 chr1 128338547 128338569 -114325784 + AT_rich Low_complexity Low_complexity 1 22 0 228 275 110 46 chr1 128339159 128339268 -114325085 - L2 LINE L2 -19 3294 3179 303 180 200 20 chr1 128339340 128339440 -114324913 - MIR SINE MIR -6 256 139 2207 173 14 148 chr1 128339446 128339588 -114324765 - L1MD3 LINE L1 -5 7990 7831 2381 97 3 0 chr1 128339588 128339899 -114324454 + AluSp SINE Alu 1 312 -1 2207 173 14 148 chr1 128339899 128340397 -114323956 - L1MD3 LINE L1 -164 7831 7436 248 230 10 90 chr1 128340397 128340497 -114323856 - MLT1F1 LTR MaLR -452 115 24 1029 139 108 5 chr1 128340497 128340691 -114323662 - L1MC3 LINE L1 -700 7085 6872 257 122 122 0 chr1 128340691 128340740 -114323613 - MIR SINE MIR -68 140 86 259 317 0 76 chr1 128340772 128340917 -114323436 + L2 LINE L2 2926 3059 -213 215 324 114 19 chr1 128341057 128341162 -114323191 + L2 LINE L2 3150 3264 -8 207 0 0 0 chr1 128342179 128342202 -114322151 + (TA)n Simple_repeat Simple_repeat 2 24 0 369 330 0 28 chr1 128342253 128342359 -114321994 + MIR SINE MIR 22 124 -84 2720 91 11 6 chr1 128342392 128342745 -114321608 - THE1A LTR MaLR 0 355 1 9380 91 18 30 chr1 128342745 128344403 -114319950 - THE1A-int LTR MaLR 0 1580 1 2408 110 8 11 chr1 128344403 128344759 -114319594 - THE1A LTR MaLR 0 355 1 196 250 0 0 chr1 128345753 128345801 -114318552 + MIR SINE MIR 215 262 0 207 0 0 0 chr1 128345920 128345943 -114318410 + (TTG)n Simple_repeat Simple_repeat 2 24 0 189 302 108 54 chr1 128346704 128346833 -114317520 + L2 LINE L2 3137 3272 0 205 206 16 79 chr1 128347418 128347481 -114316872 + L2 LINE L2 3214 3272 0 673 270 56 28 chr1 128348407 128348659 -114315694 + MIR SINE MIR 2 260 -2 320 319 36 24 chr1 128348766 128348932 -114315421 - MIR SINE MIR -93 169 2 2679 117 3 5 chr1 128349186 128349561 -114314792 + LTR57 LTR ERVL 1 374 -37 189 239 389 0 chr1 128349802 128349915 -114314438 - MIR SINE MIR -70 192 36 233 343 155 23 chr1 128350329 128350548 -114313805 + MIR SINE MIR 4 251 -11 2577 143 9 41 chr1 128350553 128350993 -114313360 + MSTB LTR MaLR 1 426 0 208 227 0 0 chr1 128351292 128351336 -114313017 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1381 80 0 11 chr1 128351672 128351848 -114312505 + AluY SINE Alu 1 174 -137 234 91 0 0 chr1 128351854 128351887 -114312466 + (A)n Simple_repeat Simple_repeat 1 33 0 251 241 26 26 chr1 128351997 128352017 -114312336 + (TA)n Simple_repeat Simple_repeat 2 21 -96 2076 128 7 3 chr1 128352017 128352307 -114312046 + AluSx SINE Alu 9 299 -13 251 241 26 26 chr1 128352307 128352402 -114311951 + (TA)n Simple_repeat Simple_repeat 20 117 0 860 235 48 37 chr1 128352405 128352699 -114311654 - L1ME3A LINE L1 -12 6158 5862 545 214 24 0 chr1 128352744 128352870 -114311483 + L1ME LINE L1 5469 5597 -573 271 233 68 34 chr1 128352943 128353089 -114311264 + L1M4 LINE L1 3065 3215 -2931 300 221 0 0 chr1 128353134 128353211 -114311142 + GA-rich Low_complexity Low_complexity 4 80 0 1176 270 43 13 chr1 128353425 128353817 -114310536 + L1M4 LINE L1 4802 5205 -941 279 221 97 26 chr1 128354507 128354620 -114309733 - L1ME4a LINE L1 -16 6105 5985 5880 50 6 1 chr1 128354634 128355349 -114309004 - L1PA8 LINE L1 -2 6170 5453 588 248 66 49 chr1 128355427 128355653 -114308700 - MIR SINE MIR -11 251 22 642 157 8 22 chr1 128356464 128356598 -114307755 - MER33 DNA MER1_type -150 174 43 2116 122 14 0 chr1 128357646 128357932 -114306421 + AluSx SINE Alu 1 290 -22 30 45 0 0 chr1 128358057 128358101 -114306252 + AT_rich Low_complexity Low_complexity 1 44 0 27 54 0 40 chr1 128358279 128358353 -114306000 + AT_rich Low_complexity Low_complexity 1 71 0 287 49 24 0 chr1 128358481 128358522 -114305831 + (CA)n Simple_repeat Simple_repeat 2 43 0 224 219 24 73 chr1 128358642 128358724 -114305629 + MIR SINE MIR 184 261 -1 322 313 114 0 chr1 128358827 128358958 -114305395 - MER115 DNA AcHobo -265 428 283 1025 238 80 50 chr1 128359512 128359874 -114304479 - L1ME2 LINE L1 -23 6141 5769 1842 198 73 13 chr1 128359931 128360385 -114303968 - L1MD2 LINE L1 0 6359 5879 227 147 93 40 chr1 128360372 128360447 -114303906 - L1MD2 LINE L1 -815 5331 5253 * 1175 112 0 112 chr1 128360449 128360655 -114303698 + AluSx SINE Alu 1 183 -129 1912 195 113 66 chr1 128360661 128360756 -114303597 - L1MD2 LINE L1 -1022 5124 5035 1668 169 32 35 chr1 128360756 128361069 -114303284 - AluSx SINE Alu 0 312 1 1912 195 113 66 chr1 128361069 128361581 -114302772 - L1MD2 LINE L1 -1111 5035 4473 2175 69 50 0 chr1 128361581 128361858 -114302495 + AluY SINE Alu 1 291 -20 1912 195 113 66 chr1 128361858 128362003 -114302350 - L1MD2 LINE L1 -1673 4473 4336 878 141 0 15 chr1 128362252 128362387 -114301966 - FLAM_C SINE Alu 0 133 1 209 266 16 31 chr1 128362492 128362556 -114301797 - MIR SINE MIR -168 94 32 2330 108 3 0 chr1 128362946 128363252 -114301101 - AluSx SINE Alu -5 307 1 2340 97 0 3 chr1 128363260 128363560 -114300793 - AluSc SINE Alu -10 299 1 1392 208 19 8 chr1 128363746 128364010 -114300343 + AluJo SINE Alu 1 267 -45 1231 157 63 100 chr1 128364406 128364705 -114299648 - AluJb SINE Alu -22 290 3 549 236 48 63 chr1 128365951 128366222 -114298131 - L2 LINE L2 -1227 2087 1821 927 190 41 0 chr1 128366230 128366425 -114297928 - MIR SINE MIR -48 214 12 722 257 91 36 chr1 128366474 128366948 -114297405 - L2 LINE L2 -1520 1794 1295 714 181 34 13 chr1 128367424 128367573 -114296780 - MER5A DNA MER1_type -28 161 10 858 239 18 22 chr1 128367815 128368041 -114296312 - MIR SINE MIR -5 257 33 2357 102 0 0 chr1 128368211 128368514 -114295839 + AluY SINE Alu 1 303 -8 305 222 0 91 chr1 128368632 128368731 -114295622 + L1MC4 LINE L1 6614 6703 -1339 269 115 0 19 chr1 128368732 128368784 -114295569 + (TA)n Simple_repeat Simple_repeat 2 52 0 180 0 0 0 chr1 128368784 128368804 -114295549 + (GA)n Simple_repeat Simple_repeat 2 21 0 1841 141 7 32 chr1 128368806 128369089 -114295264 - AluJb SINE Alu -36 276 1 186 297 135 0 chr1 128369379 128369453 -114294900 + MIR SINE MIR 67 150 -112 377 250 171 0 chr1 128370016 128370168 -114294185 - MIR SINE MIR -3 259 82 237 295 80 45 chr1 128370216 128370440 -114293913 - L2 LINE L2 -78 3194 2963 208 345 78 9 chr1 128371017 128371336 -114293017 + L2 LINE L2 2034 2374 -940 344 310 101 70 chr1 128371765 128372210 -114292143 + L2 LINE L2 2809 3267 -5 203 179 0 26 chr1 128373540 128373579 -114290774 + CT-rich Low_complexity Low_complexity 3 40 0 288 0 0 0 chr1 128373839 128373871 -114290482 + (CAG)n Simple_repeat Simple_repeat 1 32 0 320 257 50 45 chr1 128374808 128374987 -114289366 + L3 LINE CR1 1330 1509 -68 204 97 0 0 chr1 128375327 128375358 -114288995 + (TC)n Simple_repeat Simple_repeat 1 31 0 213 326 56 22 chr1 128375597 128375686 -114288667 + MIR SINE MIR 31 122 -140 1169 188 15 125 chr1 128375909 128375969 -114288384 + AluJo SINE Alu 2 67 -235 2108 125 7 14 chr1 128375969 128376265 -114288088 - AluSx SINE Alu -18 294 1 1169 188 15 125 chr1 128376265 128376539 -114287814 + AluJo SINE Alu 67 299 -3 2342 101 67 45 chr1 128377389 128377600 -114286753 - MLT1B LTR MaLR -4 386 162 2269 79 0 4 chr1 128377600 128377877 -114286476 - AluSq SINE Alu -15 298 23 2342 101 67 45 chr1 128377877 128378041 -114286312 - MLT1B LTR MaLR -228 162 3 329 290 168 62 chr1 128378269 128378686 -114285667 + L2 LINE L2 2809 3269 -3 307 351 54 14 chr1 128378717 128378865 -114285488 + L2 LINE L2 3117 3270 -2 2843 10 0 3 chr1 128379106 128379413 -114284940 - AluYa5 SINE Alu -5 306 1 26 0 0 0 chr1 128379417 128379443 -114284910 + AT_rich Low_complexity Low_complexity 1 26 0 1256 216 2 100 chr1 128379545 128379953 -114284400 - LTR28 LTR ERV1 -84 936 503 250 261 87 0 chr1 128379961 128380030 -114284323 + LTR27 LTR ERV1 560 634 -2 2132 114 3 0 chr1 128380035 128380333 -114284020 - LTR8A LTR ERV1 -428 299 1 1746 152 3 38 chr1 128380796 128381086 -114283267 - AluSx SINE Alu -19 293 14 519 173 0 55 chr1 128381109 128381219 -114283134 - MLT1B LTR MaLR -135 255 152 44477 45 1 3 chr1 128381222 128387392 -114276961 + L1PA4 LINE L1 2 6155 0 747 121 12 124 chr1 128387399 128387483 -114276870 - MLT1B LTR MaLR -227 163 71 2332 114 0 0 chr1 128387483 128387782 -114276571 + AluSg SINE Alu 1 299 -11 747 121 12 124 chr1 128387782 128387862 -114276491 - MLT1B LTR MaLR -319 71 27 1584 189 30 57 chr1 128387862 128388012 -114276341 + MLT1A1 LTR MaLR 5 158 -207 2098 129 3 7 chr1 128388012 128388322 -114276031 + AluSq SINE Alu 1 309 -4 1584 189 30 57 chr1 128388322 128388542 -114275811 + MLT1A1 LTR MaLR 158 365 0 747 121 12 124 chr1 128388542 128388561 -114275792 - MLT1B LTR MaLR -363 27 7 1127 294 20 14 chr1 128388860 128389204 -114275149 + MLT1I LTR MaLR 60 405 -4 226 284 69 0 chr1 128389266 128389382 -114274971 + L1P LINE L1 4976 5099 -1047 241 175 105 35 chr1 128389526 128389583 -114274770 + MLT1H LTR MaLR 1 61 -488 344 270 87 0 chr1 128389733 128389848 -114274505 + MLT1G1 LTR MaLR 466 590 -5 1763 204 108 136 chr1 128389870 128390448 -114273905 + L1MC4a LINE L1 5218 5810 -336 2492 93 3 0 chr1 128390448 128390759 -114273594 + AluSp SINE Alu 1 312 -1 1763 204 108 136 chr1 128390759 128390977 -114273376 + L1MC4a LINE L1 5810 5202 -944 261 0 0 0 chr1 128390977 128391006 -114273347 + (CA)n Simple_repeat Simple_repeat 2 30 0 1763 204 108 136 chr1 128391006 128391204 -114273149 + L1MC4a LINE L1 5201 5403 -743 250 264 154 11 chr1 128391256 128391347 -114273006 - MIR SINE MIR -130 132 29 221 265 20 78 chr1 128391349 128391451 -114272902 + MIR SINE MIR 87 182 -80 363 273 108 23 chr1 128391563 128391739 -114272614 - MIR SINE MIR -25 237 47 2476 93 0 0 chr1 128391890 128392202 -114272151 - AluSx SINE Alu 0 312 1 207 280 0 40 chr1 128392403 128392478 -114271875 + MIR SINE MIR 185 256 -6 189 250 0 0 chr1 128393177 128393237 -114271116 + GA-rich Low_complexity Low_complexity 1 60 0 318 211 170 48 chr1 128393880 128394027 -114270326 + L2 LINE L2 2665 2829 -485 2509 141 64 5 chr1 128394515 128394919 -114269434 + MSTA LTR MaLR 1 428 0 449 266 70 0 chr1 128396022 128396150 -114268203 + MIR3 SINE MIR 6 142 -66 206 284 68 0 chr1 128396810 128396884 -114267469 + L2 LINE L2 3204 3282 -31 1369 258 80 8 chr1 128397067 128397431 -114266922 + LTR16A LTR ERVL 61 450 0 564 272 118 33 chr1 128397431 128397614 -114266739 - L2 LINE L2 -27 3286 3120 2939 73 0 56 chr1 128397614 128397836 -114266517 - THE1C LTR MaLR -2 373 181 2351 99 0 3 chr1 128397836 128398138 -114266215 + AluSq SINE Alu 1 301 -12 2939 73 0 56 chr1 128398138 128398310 -114266043 - THE1C LTR MaLR -194 181 1 564 272 118 33 chr1 128398310 128398530 -114265823 - L2 LINE L2 -193 3120 2792 24 32 0 0 chr1 128398585 128398616 -114265737 + AT_rich Low_complexity Low_complexity 1 31 0 1060 256 248 6 chr1 128398697 128399221 -114265132 - L2 LINE L2 -981 2333 1683 888 274 98 6 chr1 128399441 128399769 -114264584 - L2 LINE L2 -1641 1673 1316 301 221 189 11 chr1 128399777 128399872 -114264481 - L2 LINE L2 -13 3259 3148 * 376 209 76 48 chr1 128399868 128399973 -114264380 - L2 LINE L2 -2020 1294 1187 2249 96 7 0 chr1 128400099 128400391 -114263962 + AluSp SINE Alu 1 294 -19 258 361 55 23 chr1 128400433 128400652 -114263701 + L2 LINE L2 2549 2774 -540 2225 92 11 0 chr1 128400680 128400961 -114263392 - AluSx SINE Alu -28 284 1 207 0 0 0 chr1 128401473 128401496 -114262857 + (A)n Simple_repeat Simple_repeat 1 23 0 576 144 59 25 chr1 128402396 128402514 -114261839 + L1M4 LINE L1 5580 5701 -473 2429 75 7 3 chr1 128402529 128402834 -114261519 + AluY SINE Alu 1 306 -5 886 144 40 0 chr1 128403550 128403723 -114260630 - Charlie5 DNA MER1_type 0 2624 2445 223 318 30 0 chr1 128404272 128404338 -114260015 - L2 LINE L2 -3 3269 3202 953 245 83 97 chr1 128404453 128405264 -114259089 + L2 LINE L2 2477 3282 -31 516 217 109 40 chr1 128405416 128405591 -114258762 + MER5A DNA MER1_type 1 187 -2 215 284 27 14 chr1 128405787 128405861 -114258492 + L2 LINE L2 2691 2765 -549 283 267 176 23 chr1 128406033 128406164 -114258189 + L2 LINE L2 3161 3311 -2 1773 174 17 10 chr1 128406838 128407132 -114257221 - 7SLRNA srpRNA srpRNA -22 298 3 206 310 17 0 chr1 128407609 128407667 -114256686 - L3 LINE CR1 -2 1575 1517 509 391 62 14 chr1 128408597 128408886 -114255467 - L2 LINE L2 -13 3259 2957 23 0 0 0 chr1 128409541 128409564 -114254789 + AT_rich Low_complexity Low_complexity 1 23 0 807 206 127 82 chr1 128409568 128409923 -114254430 - L1ME1 LINE L1 -5 6161 5791 747 284 91 29 chr1 128410417 128411162 -114253191 + L1MC4a LINE L1 4795 5595 -759 1950 166 0 3 chr1 128411174 128411481 -114252872 + AluJb SINE Alu 1 306 -6 216 0 0 0 chr1 128411868 128411892 -114252461 + (A)n Simple_repeat Simple_repeat 1 24 0 810 242 8 76 chr1 128411895 128412159 -114252194 + L1MC4a LINE L1 5692 5937 -1871 2119 139 3 0 chr1 128412220 128412522 -114251831 + AluY SINE Alu 1 303 -8 28 86 0 0 chr1 128412612 128412682 -114251671 + AT_rich Low_complexity Low_complexity 1 70 0 569 93 139 0 chr1 128412989 128413075 -114251278 + MER4A LTR ERV1 1 98 -566 1902 128 6 10 chr1 128413076 128413422 -114250931 + MER4A LTR ERV1 262 664 0 2741 159 17 2 chr1 128414010 128414430 -114249923 - MSTB LTR MaLR 0 426 1 197 294 141 0 chr1 128414573 128414658 -114249695 - MIR SINE MIR 0 262 166 3447 164 64 14 chr1 128414724 128415316 -114249037 - LTR26E LTR ERV1 0 622 1 416 269 37 0 chr1 128415316 128415424 -114248929 - MIR SINE MIR -105 157 46 241 203 266 25 chr1 128415646 128415725 -114248628 - MIR SINE MIR -164 98 1 2067 126 3 43 chr1 128415788 128416113 -114248240 - AluSx SINE Alu 0 312 1 2381 83 0 0 chr1 128416343 128416645 -114247708 - AluSg SINE Alu -8 302 1 2459 62 0 20 chr1 128416645 128416950 -114247403 - AluY SINE Alu -11 300 1 2357 98 0 10 chr1 128417271 128417578 -114246775 + AluSx SINE Alu 1 304 -8 271 283 120 22 chr1 128417670 128417762 -114246591 + L2 LINE L2 3169 3269 -3 2241 121 3 10 chr1 128417817 128418131 -114246222 - AluSx SINE Alu 0 312 1 260 261 114 34 chr1 128418219 128418307 -114246046 - L2 LINE L2 -27 3245 3151 930 256 50 8 chr1 128418837 128419079 -114245274 + MIR SINE MIR 11 262 0 426 273 87 48 chr1 128419156 128419582 -114244771 - L1ME4a LINE L1 -32 6089 5637 766 290 83 46 chr1 128420205 128420685 -114243668 - MLT1J LTR MaLR 0 511 14 2061 119 32 0 chr1 128420853 128421138 -114243215 + AluSg SINE Alu 1 294 -16 2471 110 21 21 chr1 128421761 128422134 -114242219 - THE1C LTR MaLR -2 373 1 10787 118 40 7 chr1 128422134 128423663 -114240690 - THE1C-int LTR MaLR 0 1580 1 2666 119 16 3 chr1 128423663 128424033 -114240320 - THE1C LTR MaLR 0 375 1 264 303 71 0 chr1 128424053 128424152 -114240201 + L2 LINE L2 3203 3308 -5 893 208 112 122 chr1 128424419 128424991 -114239362 + MER34B LTR ERV1 1 542 0 228 266 194 43 chr1 128425395 128425534 -114238819 - MIR SINE MIR -44 218 59 1518 47 5 26 chr1 128425735 128425927 -114238426 - L1PA6 LINE L1 0 6154 5967 3817 151 24 47 chr1 128426036 128426743 -114237610 - LTR8 LTR ERV1 0 691 1 3944 160 70 3 chr1 128426960 128427621 -114236732 + MER50 LTR ERV1 7 711 -23 2527 78 0 0 chr1 128427926 128428235 -114236118 + AluSg SINE Alu 1 309 -1 354 374 24 16 chr1 128428697 128428820 -114235533 + L2 LINE L2 2955 3078 -194 23 0 0 0 chr1 128428834 128428857 -114235496 + AT_rich Low_complexity Low_complexity 1 23 0 2230 107 0 3 chr1 128428860 128429181 -114235172 + AluSc SINE Alu 1 309 0 387 237 186 0 chr1 128429213 128429331 -114235022 + MER91C DNA MER1_type 1 140 0 402 315 39 8 chr1 128429383 128429510 -114234843 + L2 LINE L2 3169 3299 -14 1634 212 44 75 chr1 128429709 128430191 -114234162 - MLT1C LTR MaLR 0 467 1 1014 177 10 61 chr1 128430201 128430265 -114234088 - MER5A DNA MER1_type 0 189 123 2304 103 0 0 chr1 128430265 128430566 -114233787 + AluSq SINE Alu 1 301 -12 1014 177 10 61 chr1 128430566 128430699 -114233654 - MER5A DNA MER1_type -66 123 2 440 229 0 38 chr1 128430716 128430821 -114233532 + MER5A DNA MER1_type 9 109 -80 268 326 92 49 chr1 128431803 128431987 -114232366 - MIR3 SINE MIR -14 194 3 736 235 74 39 chr1 128432192 128432477 -114231876 - MER102a DNA MER1_type -35 295 1 276 327 168 14 chr1 128432478 128432692 -114231661 + MIR SINE MIR 8 254 -8 860 168 97 48 chr1 128433329 128433379 -114230974 - LTR29 LTR ERV1 0 595 549 1995 97 16 66 chr1 128433379 128433698 -114230655 + AluSx SINE Alu 1 303 -9 860 168 97 48 chr1 128433698 128433926 -114230427 - LTR29 LTR ERV1 -46 549 316 928 135 0 0 chr1 128433980 128434113 -114230240 - AluSq/x SINE Alu -179 133 1 695 157 57 7 chr1 128434113 128434253 -114230100 - LTR29 LTR ERV1 -475 147 1 746 264 41 21 chr1 128434907 128435149 -114229204 + MIR SINE MIR 12 258 -4 1807 146 6 47 chr1 128435149 128435509 -114228844 - MER4A LTR ERV1 0 664 261 318 83 375 14 chr1 128435509 128435581 -114228772 - MER4A LTR ERV1 -566 98 1 3929 162 38 14 chr1 128435744 128436399 -114227954 - LTR51 LTR ERV1 0 671 1 714 221 127 58 chr1 128436549 128436822 -114227531 + MER67C LTR ERV1 4 295 -415 2653 170 79 34 chr1 128436822 128437381 -114226972 + MER34C LTR ERV1 1 584 -1 1803 186 76 33 chr1 128437382 128437598 -114226755 + MER67C LTR ERV1 292 497 -213 1567 205 48 62 chr1 128437598 128437957 -114226396 + MSTD LTR MaLR 1 355 -41 2382 100 0 3 chr1 128437957 128438268 -114226085 - AluSx SINE Alu 0 312 3 1567 205 48 62 chr1 128438268 128438308 -114226045 + MSTD LTR MaLR 355 394 -2 1803 186 76 33 chr1 128438308 128438488 -114225865 + MER67C LTR ERV1 497 705 -5 1544 174 4 30 chr1 128438488 128438758 -114225595 + AluJo SINE Alu 1 263 -49 189 0 0 0 chr1 128438766 128438787 -114225566 + (TA)n Simple_repeat Simple_repeat 2 22 0 385 250 192 6 chr1 128438799 128438955 -114225398 - LTR16A LTR ERVL -233 217 33 2707 196 19 14 chr1 128439398 128439914 -114224439 - MLT2B1 LTR ERVL 0 520 2 2174 128 0 3 chr1 128440980 128441286 -114223067 + AluSx SINE Alu 1 305 -7 592 306 118 47 chr1 128441299 128441639 -114222714 - L2 LINE L2 0 3313 2950 401 341 49 19 chr1 128441911 128442219 -114222134 + L1 LINE L1 3634 3950 -2196 503 304 108 30 chr1 128442455 128442751 -114221602 + L1MEd LINE L1 251 569 -5550 1039 161 23 69 chr1 128442809 128443027 -114221326 + MER58C DNA MER1_type 4 211 -4 23 33 0 0 chr1 128443205 128443235 -114221118 + AT_rich Low_complexity Low_complexity 1 30 0 855 161 0 0 chr1 128443235 128443372 -114220981 + FAM SINE Alu 22 158 -27 2344 99 0 10 chr1 128443421 128443734 -114220619 - AluSg SINE Alu 0 310 1 629 315 38 17 chr1 128443748 128444094 -114220259 + L1MEd LINE L1 905 1257 -4862 2405 91 0 0 chr1 128444176 128444473 -114219880 + AluSx SINE Alu 1 297 -15 331 250 81 34 chr1 128444618 128444766 -114219587 + L1MC4a LINE L1 6120 6274 -1534 964 77 8 0 chr1 128444783 128444913 -114219440 + AluY SINE Alu 175 305 -6 1179 186 5 0 chr1 128445086 128445280 -114219073 - MLT1B LTR MaLR 0 390 196 827 166 0 22 chr1 128445328 128445467 -114218886 - FLAM_C SINE Alu -5 138 3 575 178 0 9 chr1 128445475 128445576 -114218777 - MLT1B LTR MaLR -215 175 76 1213 191 82 73 chr1 128445576 128445917 -114218436 + MER2 DNA MER2_type 1 344 -1 362 121 17 17 chr1 128445925 128445983 -114218370 - MLT1B LTR MaLR -332 58 1 631 287 96 19 chr1 128446004 128446099 -114218254 + L1MC5 LINE L1 6505 6591 -1451 207 200 0 0 chr1 128446099 128446134 -114218219 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 631 287 96 19 chr1 128446134 128446443 -114217910 + L1MC5 LINE L1 6591 6991 -1051 439 266 42 14 chr1 128446446 128446589 -114217764 + LTR67 LTR ERVL 400 546 -11 261 0 0 0 chr1 128447888 128447917 -114216436 + (TTA)n Simple_repeat Simple_repeat 2 30 0 621 204 9 0 chr1 128447921 128448029 -114216324 - FLAM_C SINE Alu -33 110 2 506 256 22 0 chr1 128449090 128449227 -114215126 + MER103 DNA DNA 2 141 -25 272 304 0 29 chr1 128449482 128449551 -114214802 - MIR3 SINE MIR -32 176 110 2493 81 0 0 chr1 128449701 128450008 -114214345 + AluSq SINE Alu 1 307 -6 463 244 161 92 chr1 128450258 128450594 -114213759 - MLT1K LTR MaLR 0 588 230 910 272 43 0 chr1 128450642 128450877 -114213476 + MIR SINE MIR 2 246 -16 895 296 33 4 chr1 128450961 128451201 -114213152 + MIR SINE MIR 16 262 0 519 228 32 24 chr1 128451268 128451391 -114212962 - L2 LINE L2 0 3313 3190 2272 89 4 0 chr1 128451477 128451802 -114212551 + AluSp SINE Alu 1 326 0 1017 127 0 13 chr1 128451802 128451975 -114212378 + AluSg/x SINE Alu 135 305 0 202 167 0 56 chr1 128452115 128452169 -114212184 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1477 264 51 51 chr1 128452326 128453276 -114211077 + L1ME3A LINE L1 4961 5927 -243 694 208 8 0 chr1 128453279 128453404 -114210949 - FLAM_A SINE Alu -7 126 1 339 372 89 11 chr1 128453486 128453666 -114210687 + L1ME3A LINE L1 5962 6155 -15 27 49 0 0 chr1 128454576 128454617 -114209736 + AT_rich Low_complexity Low_complexity 1 41 0 275 261 54 0 chr1 128454809 128454901 -114209452 - L1ME LINE L1 -314 5807 5711 402 300 0 29 chr1 128454904 128455044 -114209309 - L3 LINE CR1 -719 858 723 1520 251 70 32 chr1 128455094 128455592 -114208761 + L1ME3A LINE L1 5649 6165 -5 2118 126 3 3 chr1 128455603 128455912 -114208441 - AluSx SINE Alu -3 309 1 1106 189 0 0 chr1 128455966 128456135 -114208218 + FAM SINE Alu 1 169 -6 879 314 104 26 chr1 128456186 128456686 -114207667 - L2 LINE L2 -916 2398 1860 285 319 82 55 chr1 128456830 128457012 -114207341 - L2 LINE L2 -2817 497 311 2126 122 14 0 chr1 128457874 128458169 -114206184 + AluSx SINE Alu 1 299 -13 2101 182 24 79 chr1 128458340 128458548 -114205805 + MLT1D LTR MaLR 1 219 -286 2342 98 0 0 chr1 128458548 128458855 -114205498 + AluSc SINE Alu 1 307 -2 2101 182 24 79 chr1 128458855 128459180 -114205173 + MLT1D LTR MaLR 219 505 0 321 241 58 136 chr1 128461101 128461244 -114203109 + L1MC4a LINE L1 5688 5729 -392 2339 94 13 0 chr1 128461244 128461553 -114202800 + AluSp SINE Alu 1 313 0 321 241 58 136 chr1 128461553 128461638 -114202715 + L1MC4a LINE L1 5729 5819 -302 426 348 94 11 chr1 128461933 128462114 -114202239 + MER91A DNA MER1_type 1 196 0 339 25 0 0 chr1 128463135 128463175 -114201178 + (TG)n Simple_repeat Simple_repeat 2 41 0 2010 127 38 0 chr1 128463191 128463483 -114200870 - AluSp SINE Alu -10 303 1 324 0 0 0 chr1 128463483 128463519 -114200834 + (TG)n Simple_repeat Simple_repeat 2 37 0 5288 64 13 10 chr1 128464194 128464867 -114199486 - SVA Other Other 0 1386 712 1983 130 14 7 chr1 128464869 128465162 -114199191 - AluSx SINE Alu -17 295 1 646 255 99 10 chr1 128465315 128465507 -114198846 + MIR SINE MIR 48 256 -6 238 215 0 89 chr1 128466645 128466724 -114197629 + L1ME4a LINE L1 5946 6017 -104 740 249 65 53 chr1 128466729 128466974 -114197379 + MIR SINE MIR 4 251 -11 1126 172 0 0 chr1 128467248 128467434 -114196919 - L1MC1 LINE L1 -82 6251 6066 2129 119 0 0 chr1 128468405 128468690 -114195663 + AluSx SINE Alu 1 285 -27 198 0 0 0 chr1 128468690 128468712 -114195641 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2360 91 0 13 chr1 128468780 128469088 -114195265 - AluSq SINE Alu -9 304 1 300 320 175 21 chr1 128469129 128469363 -114194990 + L1M3c LINE L1 1278 1547 -4594 236 238 0 0 chr1 128469534 128469576 -114194777 + MLT1I LTR MaLR 96 137 -272 417 233 164 27 chr1 128469728 128469874 -114194479 + MLT1H LTR MaLR 382 547 -2 318 324 62 70 chr1 128470030 128470148 -114194205 + HAL1 LINE L1 1428 1545 -962 2219 98 0 41 chr1 128470148 128470464 -114193889 - AluSg SINE Alu -6 304 2 318 324 62 70 chr1 128470464 128470586 -114193767 + HAL1 LINE L1 1545 1666 -841 545 251 51 30 chr1 128470623 128470957 -114193396 + L1M3c LINE L1 3201 3541 -2669 186 43 0 0 chr1 128470988 128471011 -114193342 + (CA)n Simple_repeat Simple_repeat 1 23 0 329 285 68 21 chr1 128471181 128471416 -114192937 + L1M3c LINE L1 4395 4640 -1570 209 323 52 78 chr1 128471635 128471827 -114192526 - L2 LINE L2 -665 2649 2463 217 346 88 60 chr1 128471971 128472508 -114191845 - L2 LINE L2 -672 2642 2091 292 301 139 36 chr1 128472940 128473106 -114191247 + MIR SINE MIR 20 202 -60 2035 125 11 0 chr1 128473334 128473669 -114190684 + AluSx SINE Alu 1 338 0 2077 81 3 55 chr1 128474070 128474379 -114189974 + AluSx SINE Alu 1 293 -19 3198 69 2 2 chr1 128475025 128475448 -114188905 - L1P LINE L1 -848 5298 4876 431 319 35 6 chr1 128476025 128476194 -114188159 - MIR SINE MIR -32 230 57 351 376 16 21 chr1 128476193 128476379 -114187974 + L2 LINE L2 2476 2660 -654 * 372 280 92 50 chr1 128476485 128476746 -114187607 + L2 LINE L2 3001 3272 0 445 222 15 82 chr1 128477049 128477184 -114187169 - MIR SINE MIR -56 206 81 2216 65 32 0 chr1 128477206 128477520 -114186833 + AluY SINE Alu 1 323 0 2084 204 84 18 chr1 128477960 128478519 -114185834 - L1M4 LINE L1 -1201 4945 4350 610 246 5 59 chr1 128478527 128478714 -114185639 + MER69A DNA AcHobo 1 177 0 190 250 29 29 chr1 128478734 128478802 -114185551 + MIR SINE MIR 109 176 -86 11893 31 3 0 chr1 128478846 128480935 -114183418 - L1PA4 LINE L1 -3 6152 4055 4590 43 4 2 chr1 128480935 128481495 -114182858 + L1PA4 LINE L1 3489 4049 -2097 460 151 48 8 chr1 128481491 128481597 -114182756 - L1MB4 LINE L1 -30 6150 6045 * 3103 143 70 0 chr1 128481791 128482323 -114182030 - L1MB5 LINE L1 -36 6138 5570 456 191 0 22 chr1 128482323 128482412 -114181941 + MIR SINE MIR 163 249 -13 183 42 0 0 chr1 128482987 128483011 -114181342 + (A)n Simple_repeat Simple_repeat 1 24 0 437 101 0 43 chr1 128483414 128483483 -114180870 - L2 LINE L2 -1 3271 3206 875 213 63 24 chr1 128484192 128484399 -114179954 + MIR SINE MIR 28 242 -20 527 196 37 0 chr1 128484717 128484824 -114179529 + MIR SINE MIR 51 161 -101 4383 129 19 7 chr1 128484827 128485509 -114178844 + MER39 LTR ERV1 3 692 -15 410 228 98 32 chr1 128486334 128486457 -114177896 - L2 LINE L2 -3 3269 3139 337 299 24 24 chr1 128486566 128486693 -114177660 - MIR SINE MIR -52 210 84 523 182 127 0 chr1 128486984 128487094 -114177259 - MER63 DNA MER1_type -86 750 1 358 248 13 74 chr1 128487287 128487436 -114176917 - MLT1K LTR MaLR 0 588 449 718 297 90 31 chr1 128487578 128487901 -114176452 - MLT1K LTR MaLR -237 351 10 1033 287 73 40 chr1 128488101 128488595 -114175758 + L2 LINE L2 2804 3313 0 2683 131 55 24 chr1 128488612 128489032 -114175321 + Tigger2a DNA MER2_type 2 434 0 226 310 106 35 chr1 128489149 128489404 -114174949 + L2 LINE L2 1869 2141 -1173 359 281 47 59 chr1 128489677 128489930 -114174423 + L1ME4a LINE L1 5653 5902 -219 2184 113 10 0 chr1 128490102 128490393 -114173960 + AluSx SINE Alu 1 294 -18 2572 65 0 0 chr1 128490398 128490706 -114173647 + AluY SINE Alu 1 308 -3 313 98 0 59 chr1 128491480 128491531 -114172822 + MIR3 SINE MIR 111 158 -50 414 229 51 42 chr1 128492214 128492332 -114172021 - MIR SINE MIR -31 231 113 1691 174 10 32 chr1 128492693 128493003 -114171350 + AluJb SINE Alu 1 303 -9 27 0 0 0 chr1 128493389 128493416 -114170937 + AT_rich Low_complexity Low_complexity 1 27 0 267 69 0 69 chr1 128493486 128493544 -114170809 + (TTCCC)n Simple_repeat Simple_repeat 3 56 0 793 217 76 2 chr1 128493697 128493910 -114170443 + L1MC4 LINE L1 6439 6679 -1363 203 147 0 0 chr1 128493922 128493956 -114170397 + (TG)n Simple_repeat Simple_repeat 2 35 0 339 237 79 39 chr1 128493984 128494119 -114170234 - L1P LINE L1 -1119 5027 4881 190 281 0 18 chr1 128494260 128494317 -114170036 + L2 LINE L2 2304 2359 -955 25 51 0 0 chr1 128494651 128494690 -114169663 + AT_rich Low_complexity Low_complexity 1 39 0 248 337 123 37 chr1 128494846 128495009 -114169344 + L2 LINE L2 2894 3070 -202 415 250 77 0 chr1 128495249 128495353 -114169000 - L2 LINE L2 -19 3294 3183 308 282 60 26 chr1 128495767 128495884 -114168469 - MIR SINE MIR -56 206 86 448 250 14 80 chr1 128496013 128496234 -114168119 + L1P LINE L1 4902 5136 -1010 2066 141 3 0 chr1 128496234 128496533 -114167820 + AluSx SINE Alu 1 300 -12 420 104 0 0 chr1 128496533 128496600 -114167753 + (TA)n Simple_repeat Simple_repeat 1 67 0 448 250 14 80 chr1 128496600 128496657 -114167696 + L1P LINE L1 5134 5157 -989 2423 76 0 3 chr1 128496710 128497014 -114167339 + AluSp SINE Alu 1 303 -10 1997 131 41 0 chr1 128498206 128498497 -114165856 + AluSx SINE Alu 1 303 -9 2228 113 3 3 chr1 128499221 128499523 -114164830 - AluSx SINE Alu -10 302 1 287 282 0 0 chr1 128499851 128499929 -114164424 - MIR SINE MIR 0 262 185 1585 162 38 11 chr1 128500880 128501029 -114163324 - AluJo SINE Alu -32 280 119 2066 91 0 44 chr1 128501029 128501364 -114162989 - AluY SINE Alu 0 322 1 1585 162 38 11 chr1 128501364 128501478 -114162875 - AluJo SINE Alu -193 119 9 251 250 0 0 chr1 128501604 128501656 -114162697 + LTR30 LTR ERV1 1 52 -670 980 129 52 0 chr1 128501660 128501815 -114162538 + LTR12 LTR ERV1 123 285 -429 370 171 34 23 chr1 128501816 128501904 -114162449 + LTR30 LTR ERV1 553 641 -81 1828 85 0 0 chr1 128501906 128502141 -114162212 + LTR12 LTR ERV1 480 714 0 1802 166 25 0 chr1 128502929 128503213 -114161140 + AluSx SINE Alu 5 295 -17 1896 181 79 31 chr1 128503247 128503701 -114160652 + MER113 DNA MER1_type? 3 478 -43 24 67 0 0 chr1 128504935 128504980 -114159373 + AT_rich Low_complexity Low_complexity 1 45 0 344 276 155 0 chr1 128505017 128505133 -114159220 - MIR SINE MIR -76 186 53 311 211 0 42 chr1 128505585 128505656 -114158697 - MIR SINE MIR -105 157 90 208 288 249 58 chr1 128508083 128508288 -114156065 + MIR SINE MIR 3 246 -16 1689 169 22 32 chr1 128508309 128508623 -114155730 + AluJb SINE Alu 1 311 -1 226 262 229 8 chr1 128509112 128509234 -114155119 - MIR SINE MIR -51 211 63 302 363 9 0 chr1 128509275 128509388 -114154965 - L2 LINE L2 -14 3258 3145 308 240 0 40 chr1 128509451 128509551 -114154802 - L2 LINE L2 -290 2982 2887 1703 98 0 0 chr1 128509874 128510099 -114154254 + AluSg/x SINE Alu 80 304 -8 604 289 36 7 chr1 128510254 128510440 -114153913 - MIR SINE MIR -60 148 3 296 351 44 0 chr1 128510892 128510961 -114153392 - MER5B DNA MER1_type -59 119 42 186 43 0 0 chr1 128510961 128510984 -114153369 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 296 351 44 0 chr1 128510984 128511028 -114153325 - MER5B DNA MER1_type -136 42 1 2115 107 17 3 chr1 128513218 128513509 -114150844 + AluSx SINE Alu 1 295 -17 652 314 22 47 chr1 128513952 128514229 -114150124 + L2 LINE L2 2566 2835 -479 374 286 156 28 chr1 128514254 128514518 -114149835 - L1MEd LINE L1 -3595 2534 2226 1786 141 69 0 chr1 128514518 128514794 -114149559 - AluJb SINE Alu -17 295 1 374 286 156 28 chr1 128514794 128514922 -114149431 - L1MEd LINE L1 -3903 2226 2116 2402 79 0 13 chr1 128514932 128515235 -114149118 - AluY SINE Alu -12 299 1 672 149 19 9 chr1 128515409 128515559 -114148794 + FLAM_A SINE Alu 11 161 0 377 281 102 40 chr1 128515687 128516142 -114148211 - L1MEd LINE L1 -855 1635 1173 1440 113 242 4 chr1 128516142 128516382 -114147971 - AluSq SINE Alu -16 297 1 377 281 102 40 chr1 128516382 128516543 -114147810 - L1MEd LINE L1 -1317 1173 1023 22 0 0 0 chr1 128516543 128516565 -114147788 + AT_rich Low_complexity Low_complexity 1 22 0 45102 39 1 2 chr1 128516586 128522748 -114141605 - L1PA3 LINE L1 0 6155 3 25 0 0 0 chr1 128522973 128522998 -114141355 + AT_rich Low_complexity Low_complexity 1 25 0 204 222 0 0 chr1 128523133 128523178 -114141175 + T-rich Low_complexity Low_complexity 2 46 0 269 109 22 0 chr1 128524393 128524439 -114139914 + CT-rich Low_complexity Low_complexity 2 48 0 2376 90 3 0 chr1 128524447 128524746 -114139607 - AluSp SINE Alu -13 300 1 497 188 94 0 chr1 128524747 128524843 -114139510 - FRAM SINE Alu -13 163 59 419 88 88 0 chr1 128524902 128524993 -114139360 + CT-rich Low_complexity Low_complexity 5 103 0 843 163 22 13 chr1 128525020 128525205 -114139148 - AluJo SINE Alu -82 230 1 603 274 97 22 chr1 128525281 128525507 -114138846 - MIR SINE MIR 0 262 20 239 198 148 74 chr1 128525531 128525612 -114138741 + L2 LINE L2 3227 3313 0 319 293 106 16 chr1 128526011 128526134 -114138219 - MLT1K LTR MaLR 0 588 455 949 241 20 40 chr1 128526134 128526383 -114137970 + MER69 DNA AcHobo 2 245 -2281 2246 109 0 0 chr1 128526428 128526722 -114137631 - AluSc SINE Alu -15 294 1 449 195 0 0 chr1 128526743 128526820 -114137533 + MER69 DNA AcHobo 2449 2525 -1 752 325 41 16 chr1 128526821 128527138 -114137215 - MLT1K LTR MaLR -130 458 134 282 241 51 66 chr1 128527325 128527462 -114136891 - MIR SINE MIR -51 211 30 350 277 56 122 chr1 128527768 128528089 -114136264 + L2 LINE L2 2955 3254 -18 312 91 0 0 chr1 128528451 128528495 -114135858 + (TG)n Simple_repeat Simple_repeat 2 45 0 25 51 0 0 chr1 128528627 128528666 -114135687 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr1 128528926 128528957 -114135396 + AT_rich Low_complexity Low_complexity 1 31 0 316 252 129 102 chr1 128530747 128531159 -114133194 - L1M2 LINE L1 -5874 975 553 * 327 277 121 88 chr1 128530892 128531315 -114133038 + L1M2 LINE L1 468 904 -5945 384 22 0 0 chr1 128531336 128531381 -114132972 + (GGA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr1 128531383 128531405 -114132948 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 128533338 128533360 -114130993 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr1 128534761 128534791 -114129562 + (TG)n Simple_repeat Simple_repeat 2 31 0 584 311 89 0 chr1 128534922 128535157 -114129196 + MIR SINE MIR 7 262 0 220 300 77 69 chr1 128535500 128535733 -114128620 - L2 LINE L2 -212 3060 2826 691 303 19 5 chr1 128535737 128535945 -114128408 + Charlie8 DNA MER1_type 34 244 -2173 320 302 76 102 chr1 128536062 128536416 -114127937 - L2 LINE L2 -527 2787 2443 455 207 24 0 chr1 128537055 128537137 -114127216 + MER33 DNA MER1_type 2 85 -239 1488 176 35 64 chr1 128537503 128537816 -114126537 - AluJo SINE Alu -8 304 1 232 172 155 0 chr1 128537949 128538007 -114126346 - MER41B LTR ERV1 -88 547 481 1016 155 72 72 chr1 128538075 128538326 -114126027 + AluJo SINE Alu 40 290 -22 384 345 30 24 chr1 128538624 128538789 -114125564 + MIR3 SINE MIR 19 184 -24 23 33 0 0 chr1 128538948 128538978 -114125375 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr1 128539290 128539321 -114125032 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 128539518 128539542 -114124811 + AT_rich Low_complexity Low_complexity 1 24 0 274 321 36 0 chr1 128539614 128539698 -114124655 - L2 LINE L2 -2 3311 3225 2548 24 3 3 chr1 128539938 128540233 -114124120 - AluY SINE Alu -16 295 1 2278 149 47 3 chr1 128540273 128540615 -114123738 + LTR18A LTR ERVL 1 357 0 2300 144 6 12 chr1 128540727 128541073 -114123280 - MER2 DNA MER2_type 0 344 1 214 287 23 0 chr1 128541077 128541164 -114123189 + (TA)n Simple_repeat Simple_repeat 2 90 0 354 289 78 0 chr1 128541384 128541512 -114122841 + L1ME LINE L1 5532 5669 -452 245 284 103 17 chr1 128541559 128541675 -114122678 + L1ME LINE L1 5663 5788 -333 2223 70 0 7 chr1 128541853 128542155 -114122198 + AluY SINE Alu 13 312 0 694 271 163 30 chr1 128542486 128543479 -114120874 - L1ME LINE L1 -373 5789 4652 3703 215 60 24 chr1 128543488 128545212 -114119141 - L1MB5 LINE L1 0 6174 4201 8121 24 6 0 chr1 128545212 128546876 -114117477 - L1PA3 LINE L1 0 6155 4482 3703 215 60 24 chr1 128546876 128547769 -114116584 - L1MB5 LINE L1 -1973 4201 3341 868 191 19 0 chr1 128547772 128547929 -114116424 - FAM SINE Alu -12 173 14 2454 220 59 6 chr1 128547945 128548807 -114115546 - L1MB5 LINE L1 -2791 3355 2427 479 215 47 128 chr1 128548867 128549016 -114115337 - LTR50 LTR ERVL -634 161 25 378 299 28 36 chr1 128550331 128550535 -114113818 + MER20B DNA MER1_type 1 201 -18 802 185 114 5 chr1 128550774 128550958 -114113395 + AluJo SINE Alu 104 307 -5 2001 141 7 25 chr1 128550960 128551366 -114112987 + L1M3 LINE L1 5194 5591 -592 1191 159 59 159 chr1 128551690 128552099 -114112254 - MLT1A2 LTR MaLR -3 371 4 1912 151 115 23 chr1 128552383 128552775 -114111578 - MSTA LTR MaLR 0 428 1 26 30 0 0 chr1 128552877 128552910 -114111443 + AT_rich Low_complexity Low_complexity 1 33 0 1670 158 55 30 chr1 128553270 128553599 -114110754 - MER1B DNA MER1_type 0 337 1 3544 213 91 112 chr1 128553721 128555613 -114108740 - L1M4 LINE L1 -1973 4173 2321 236 217 33 0 chr1 128555617 128555677 -114108676 - L1ME1 LINE L1 -5 6161 6100 194 372 51 70 chr1 128555703 128556214 -114108139 + L2 LINE L2 2267 2767 -547 221 364 100 0 chr1 128556256 128556366 -114107987 + L2 LINE L2 2882 3002 -270 2414 63 0 3 chr1 128558104 128558404 -114105949 - AluY SINE Alu -12 299 1 408 269 66 28 chr1 128558409 128558591 -114105762 - L1M4 LINE L1 -1988 4158 3970 238 282 88 46 chr1 128558768 128558984 -114105369 - L2 LINE L2 -1472 1842 1618 250 175 0 35 chr1 128559074 128559131 -114105222 - MLT1J LTR MaLR -50 461 407 417 292 8 0 chr1 128559142 128559262 -114105091 - MLT1J LTR MaLR -386 125 5 537 256 100 56 chr1 128559304 128559554 -114104799 + MIR SINE MIR 2 262 0 206 125 21 42 chr1 128559591 128559639 -114104714 + A-rich Low_complexity Low_complexity 5 51 0 789 234 198 46 chr1 128559848 128560216 -114104137 - MER77 LTR ERV1 -7 598 175 212 313 15 0 chr1 128560970 128561037 -114103316 - MIR SINE MIR -103 105 38 39 0 0 0 chr1 128561411 128561450 -114102903 + AT_rich Low_complexity Low_complexity 1 39 0 2375 85 0 3 chr1 128561666 128561972 -114102381 - AluSq SINE Alu -8 305 1 474 304 80 84 chr1 128562073 128562412 -114101941 - L2 LINE L2 -19 3253 2903 2051 120 3 3 chr1 128562412 128562711 -114101642 + AluSx SINE Alu 1 299 -13 474 304 80 84 chr1 128562711 128563027 -114101326 - L2 LINE L2 -369 2903 2587 373 257 142 0 chr1 128563077 128563190 -114101163 + MER103 DNA DNA 5 133 -33 295 283 28 19 chr1 128563653 128563759 -114100594 - MLT1L LTR MaLR -159 456 350 2041 193 63 85 chr1 128564445 128564854 -114099499 - L1MD2 LINE L1 -256 6497 6103 1683 145 7 16 chr1 128564854 128565158 -114099195 - L1MB3 LINE L1 0 6183 5883 2041 193 63 85 chr1 128565158 128565339 -114099014 - L1MD2 LINE L1 -650 6103 5920 320 333 10 0 chr1 128565574 128565670 -114098683 + MER5B DNA MER1_type 2 98 -80 209 263 13 26 chr1 128565820 128565896 -114098457 + T-rich Low_complexity Low_complexity 3 77 0 21 57 0 0 chr1 128566620 128566655 -114097698 + AT_rich Low_complexity Low_complexity 1 35 0 360 216 0 14 chr1 128567543 128567617 -114096736 - MER68 LTR ERV1 0 562 490 2229 249 46 9 chr1 128567624 128568303 -114096050 - L1MD2 LINE L1 -1826 4714 4011 313 257 137 33 chr1 128568386 128568569 -114095784 - MLT1K LTR MaLR 0 588 387 568 255 13 52 chr1 128568724 128568792 -114095561 + MER58A DNA MER1_type 1 70 -271 2144 104 27 3 chr1 128568792 128569091 -114095262 + AluY SINE Alu 1 306 -5 568 255 13 52 chr1 128569091 128569175 -114095178 + MER58A DNA MER1_type 70 147 -77 244 315 121 20 chr1 128571518 128571667 -114092686 - L3 LINE CR1 -97 1480 1317 335 290 99 89 chr1 128571793 128572086 -114092267 - MLT1K LTR MaLR -167 421 126 852 167 33 61 chr1 128572157 128572337 -114092016 + FAM SINE Alu 1 175 0 3331 245 89 12 chr1 128572553 128573775 -114090578 - L1M4 LINE L1 -2385 3761 2446 406 247 0 54 chr1 128573795 128573927 -114090426 + L1ME LINE L1 3646 3770 -2376 1111 227 125 22 chr1 128573927 128574240 -114090113 + MER2 DNA MER2_type 1 345 0 977 227 63 28 chr1 128574246 128575978 -114088375 + L1ME LINE L1 3786 5644 -522 22 0 0 0 chr1 128576324 128576346 -114088007 + AT_rich Low_complexity Low_complexity 1 22 0 327 271 114 52 chr1 128576355 128576722 -114087631 - L1MD2 LINE L1 -2839 3701 1179 309 256 67 0 chr1 128577491 128577581 -114086772 - MER110 LTR ERV1 -15 476 381 1136 129 25 20 chr1 128577588 128577790 -114086563 - MER110A LTR ERV1 -244 224 22 258 249 35 0 chr1 128577918 128578017 -114086336 - L1MEd LINE L1 -2399 3730 3627 201 250 0 0 chr1 128578028 128578068 -114086285 + polypyrimidine Low_complexity Low_complexity 1 40 0 29 0 0 0 chr1 128578248 128578277 -114086076 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chr1 128578491 128578547 -114085806 + AT_rich Low_complexity Low_complexity 1 56 0 895 138 0 0 chr1 128578911 128579041 -114085312 + MLT1A1 LTR MaLR 1 130 -235 23 0 0 0 chr1 128579041 128579064 -114085289 + AT_rich Low_complexity Low_complexity 1 23 0 196 260 353 0 chr1 128579182 128579332 -114085021 + MIR SINE MIR 60 262 0 1153 282 109 15 chr1 128579609 128580003 -114084350 - MLT1J LTR MaLR -2 509 79 443 224 40 20 chr1 128580016 128580168 -114084185 - L1M4 LINE L1 -1031 5115 4961 259 250 4 21 chr1 128580410 128580506 -114083847 - L1M4 LINE L1 -1509 4637 4540 265 274 46 55 chr1 128580523 128580563 -114083790 - L1MEd LINE L1 -3820 2309 2270 1296 239 227 20 chr1 128580563 128581220 -114083133 - LTR50 LTR ERVL -2 793 1 265 274 46 55 chr1 128581220 128581398 -114082955 - L1MEd LINE L1 -3859 2270 2093 245 29 0 29 chr1 128581554 128581589 -114082764 + (TA)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chr1 128581726 128581753 -114082600 + (TC)n Simple_repeat Simple_repeat 1 27 0 758 147 65 2 chr1 128581843 128582060 -114082293 + AluJ SINE Alu 13 277 -35 625 244 182 27 chr1 128582206 128582464 -114081889 - L2 LINE L2 -37 3276 2979 323 305 96 2 chr1 128582574 128582792 -114081561 - L1MEd LINE L1 -4873 1246 1128 794 320 105 21 chr1 128582857 128583368 -114080985 - L2 LINE L2 -154 3159 2597 234 309 0 0 chr1 128583400 128583455 -114080898 - L2 LINE L2 -17 3255 3201 22 0 0 0 chr1 128583616 128583638 -114080715 + AT_rich Low_complexity Low_complexity 1 22 0 188 261 30 113 chr1 128584216 128584419 -114079934 - L2 LINE L2 -1257 2057 1872 366 363 21 32 chr1 128585836 128586026 -114078327 - MER5A DNA MER1_type -1 188 1 3394 214 154 12 chr1 128586079 128587685 -114076668 - L1ME1 LINE L1 -5 6441 4596 532 97 21 32 chr1 128587775 128587868 -114076485 - L1MB3 LINE L1 -11 6172 6081 1044 80 0 0 chr1 128587889 128588027 -114076326 - AluSp/q SINE Alu 0 313 176 459 200 13 73 chr1 128588027 128588177 -114076176 - L1ME1 LINE L1 -1818 4608 4468 539 189 2 0 chr1 128588249 128588361 -114075992 - L1 LINE L1 -1968 4458 4345 318 186 62 0 chr1 128589101 128589198 -114075155 + GA-rich Low_complexity Low_complexity 1 103 0 1856 247 47 12 chr1 128589256 128589767 -114074586 + L1M4 LINE L1 3510 4038 -2108 958 278 56 73 chr1 128589741 128590451 -114073902 - L1ME1 LINE L1 -4410 2197 1500 * 1994 166 40 3 chr1 128590451 128590801 -114073552 - MER47A DNA MER2_type -1 365 3 380 230 44 0 chr1 128590819 128590932 -114073421 - L1ME1 LINE L1 -4815 1611 1494 1047 261 147 37 chr1 128591021 128591822 -114072531 + L1ME4a LINE L1 648 1496 -4719 681 300 67 34 chr1 128591830 128592111 -114072242 + L1ME4a LINE L1 1836 2106 -4290 189 0 0 0 chr1 128592111 128592132 -114072221 + (TC)n Simple_repeat Simple_repeat 2 22 0 1873 149 0 20 chr1 128592133 128592434 -114071919 - AluJb SINE Alu -17 295 1 681 300 67 34 chr1 128592434 128592793 -114071560 + L1ME4a LINE L1 2105 2499 -3897 6264 65 21 59 chr1 128592814 128594757 -114069596 - SVA Other Other -518 1386 58 303 28 0 0 chr1 128594757 128594793 -114069560 + (AGGGGG)n Simple_repeat Simple_repeat 3 38 0 1919 241 81 107 chr1 128594906 128595341 -114069012 + L1ME4a LINE L1 2458 2903 -3312 1840 179 0 3 chr1 128595341 128595638 -114068715 + AluJb SINE Alu 1 296 -16 1919 241 81 107 chr1 128595638 128596827 -114067526 + L1ME4a LINE L1 2903 4039 -2176 1035 203 88 0 chr1 128596829 128597046 -114067307 + MER46A DNA MER2_type 1 236 0 497 264 25 18 chr1 128597075 128597238 -114067115 + L1ME4a LINE L1 4064 4227 -1988 302 214 0 37 chr1 128597261 128597351 -114067002 - L1M4 LINE L1 -1883 4263 4177 658 295 66 20 chr1 128598062 128598411 -114065942 + L1ME4a LINE L1 5607 5971 -219 441 0 0 0 chr1 128598423 128598472 -114065881 + (TG)n Simple_repeat Simple_repeat 2 50 0 1018 325 161 14 chr1 128598479 128599220 -114065133 - L2 LINE L2 -680 2634 1785 2203 107 0 0 chr1 128599451 128599742 -114064611 + AluSx SINE Alu 1 291 -21 811 232 106 49 chr1 128599763 128600151 -114064202 - LTR50 LTR ERVL -8 787 293 1265 233 82 41 chr1 128600177 128600615 -114063738 + LTR40c LTR ERVL 3 458 -7 409 286 91 15 chr1 128600934 128601133 -114063220 + HAL1 LINE L1 1423 1636 -871 21 82 0 0 chr1 128601149 128601198 -114063155 + AT_rich Low_complexity Low_complexity 1 49 0 186 43 0 0 chr1 128601222 128601245 -114063108 + (TG)n Simple_repeat Simple_repeat 1 23 0 783 228 22 33 chr1 128601245 128601429 -114062924 + MIR SINE MIR 17 198 -64 358 300 147 7 chr1 128601588 128601738 -114062615 - L2 LINE L2 -1 3312 3142 539 235 61 0 chr1 128601761 128601876 -114062477 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 4228 124 40 15 chr1 128601853 128602572 -114061781 + Tigger3(Golem) DNA MER2_type 2278 3014 -15 622 282 96 65 chr1 128602594 128603045 -114061308 - L2 LINE L2 -172 3141 2662 180 229 49 49 chr1 128603096 128603157 -114061196 + L2 LINE L2 2703 2763 -551 2103 118 0 3 chr1 128603174 128603470 -114060883 - AluSx SINE Alu -17 295 1 473 281 23 19 chr1 128603502 128603813 -114060540 + L1MC4a LINE L1 5493 5653 -468 23 33 0 0 chr1 128604198 128604228 -114060125 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 128607344 128607373 -114056980 + AT_rich Low_complexity Low_complexity 1 29 0 629 191 87 0 chr1 128607459 128607574 -114056779 - FLAM_C SINE Alu -17 126 2 416 353 35 14 chr1 128607781 128608070 -114056283 - L1MC4a LINE L1 -1910 5898 5604 559 244 171 35 chr1 128608087 128608431 -114055922 - L1ME LINE L1 -505 5657 5267 1261 235 64 53 chr1 128608635 128609183 -114055170 - L1ME LINE L1 -2108 4038 3485 1547 199 3 3 chr1 128609216 128609502 -114054851 - AluJb SINE Alu -26 286 1 357 45 0 0 chr1 128609516 128609560 -114054793 + (TG)n Simple_repeat Simple_repeat 1 44 0 380 167 0 10 chr1 128609560 128609662 -114054691 + (TA)n Simple_repeat Simple_repeat 1 101 0 2760 241 72 35 chr1 128609666 128610895 -114053458 - L1ME LINE L1 -2686 3460 2187 260 330 75 59 chr1 128610909 128611267 -114053086 - L1MC/D LINE L1 -1931 5877 5514 2448 146 8 0 chr1 128611505 128611902 -114052451 - L1P LINE L1 -1400 4746 4347 1135 245 55 51 chr1 128611930 128612437 -114051916 + L1ME2 LINE L1 745 1253 -5143 4764 152 49 35 chr1 128612482 128612951 -114051402 + Tigger1 DNA MER2_type 1 489 -1929 2069 138 0 0 chr1 128612951 128613249 -114051104 + AluJo SINE Alu 1 298 -14 4764 152 49 35 chr1 128613249 128613661 -114050692 + Tigger1 DNA MER2_type 489 894 -1524 11119 88 25 3 chr1 128613661 128615196 -114049157 + THE1B-int LTR MaLR 13 1580 0 1973 117 135 15 chr1 128615196 128615521 -114048832 + THE1B LTR MaLR 1 364 0 964 187 0 0 chr1 128615521 128615692 -114048661 + AluY SINE Alu 141 311 0 2186 114 0 3 chr1 128615699 128615996 -114048357 + AluSx SINE Alu 1 296 -16 11703 125 32 17 chr1 128615996 128617903 -114046450 + Tigger1 DNA MER2_type 484 2418 0 1661 252 162 11 chr1 128617905 128618722 -114045631 + L1ME2 LINE L1 1241 2230 -4023 1083 204 88 50 chr1 128618721 128619173 -114045180 + L1ME2 LINE L1 5606 6224 -9 * 371 305 68 32 chr1 128619718 128619967 -114044386 + L1ME4a LINE L1 5584 5841 -280 1351 193 191 17 chr1 128620292 128620759 -114043594 + MER114 LTR ERV 96 643 -5 667 306 112 48 chr1 128621325 128621847 -114042506 + L2 LINE L2 2624 3164 -149 294 50 0 0 chr1 128622159 128622199 -114042154 + (TA)n Simple_repeat Simple_repeat 2 41 0 2258 97 3 3 chr1 128622199 128622497 -114041856 - AluSq SINE Alu -14 299 2 239 333 81 49 chr1 128622603 128623038 -114041315 + L1ME LINE L1 35 602 -5603 312 257 49 0 chr1 128623385 128623504 -114040849 + L1MC4a LINE L1 5668 5795 -367 317 267 79 55 chr1 128623546 128623711 -114040642 - MER20B DNA MER1_type -610 173 5 269 213 0 88 chr1 128623715 128623795 -114040558 + L1MC4a LINE L1 5787 5859 -1949 334 293 40 27 chr1 128623798 128623948 -114040405 + L1MC4a LINE L1 5910 6061 -1747 22 56 0 0 chr1 128624007 128624043 -114040310 + AT_rich Low_complexity Low_complexity 1 36 0 415 319 23 38 chr1 128624525 128624867 -114039486 + L1MB4 LINE L1 4102 4438 -1708 2715 130 14 11 chr1 128624879 128625325 -114039028 + L1MA4 LINE L1 5802 6248 -52 23 0 0 0 chr1 128625343 128625366 -114038987 + AT_rich Low_complexity Low_complexity 1 23 0 564 260 79 34 chr1 128625366 128625741 -114038612 + L1MB4 LINE L1 4457 4872 -1274 251 180 60 0 chr1 128625879 128625929 -114038424 + L1P4 LINE L1 5597 5649 -525 1214 204 37 24 chr1 128626112 128626508 -114037845 - MER65C LTR ERV1 0 461 1 71 24 0 0 chr1 128626750 128626835 -114037518 + AT_rich Low_complexity Low_complexity 1 85 0 249 33 0 0 chr1 128627182 128627212 -114037141 + (CA)n Simple_repeat Simple_repeat 2 31 0 1754 147 35 3 chr1 128627758 128628044 -114036309 + AluJb SINE Alu 2 296 -16 335 191 32 53 chr1 128629071 128629165 -114035188 + HAL1b LINE L1 554 645 -703 263 255 135 65 chr1 128629206 128629406 -114034947 + HAL1b LINE L1 443 656 -692 482 228 104 104 chr1 128629419 128629832 -114034521 + HAL1b LINE L1 936 1348 0 314 294 92 26 chr1 128630166 128630319 -114034034 + MIR SINE MIR 14 176 -86 194 338 60 38 chr1 128630504 128630637 -114033716 - L2 LINE L2 -1 3271 3136 1982 79 4 4 chr1 128631709 128631974 -114032379 - THE1C LTR MaLR 0 375 111 610 268 58 41 chr1 128632012 128632141 -114032212 + L1ME4a LINE L1 5611 5747 -374 933 211 29 5 chr1 128632141 128632345 -114032008 + MER3 DNA MER1_type 1 209 0 610 268 58 41 chr1 128632345 128632458 -114031895 + L1ME4a LINE L1 5747 5857 -264 837 117 0 0 chr1 128632747 128632867 -114031486 + AluSg/x SINE Alu 184 303 -9 4463 174 35 33 chr1 128632891 128634175 -114030178 + L1MB4 LINE L1 4899 6178 -2 467 271 77 24 chr1 128636087 128636257 -114028096 - L2 LINE L2 -7 3306 3128 * 2546 266 118 31 chr1 128636251 128636407 -114027946 + L2 LINE L2 1984 2125 -1188 1016 113 163 30 chr1 128636407 128636610 -114027743 - MER30 DNA MER1_type 0 230 1 2546 266 118 31 chr1 128636610 128637447 -114026906 + L2 LINE L2 2125 3062 -251 182 343 76 30 chr1 128637484 128637682 -114026671 - L2 LINE L2 -1874 1440 1234 2449 213 89 24 chr1 128638361 128639023 -114025330 - L1ME1 LINE L1 -5 6230 5526 6874 56 9 0 chr1 128639044 128640721 -114023632 - L1PA7 LINE L1 -2 6152 4464 7637 84 8 6 chr1 128640721 128641784 -114022569 + L1PA7 LINE L1 3401 4466 -1680 2187 219 51 30 chr1 128641782 128642578 -114021775 - L1ME1 LINE L1 -694 5541 4724 * 5446 83 18 29 chr1 128642589 128643383 -114020970 - L1PA11 LINE L1 0 6174 5390 2717 254 71 15 chr1 128643407 128644211 -114020142 - L1ME1 LINE L1 -5506 890 42 1135 272 118 15 chr1 128645144 128645534 -114018819 - MLT1H LTR MaLR -9 540 111 257 273 130 0 chr1 128645679 128645756 -114018597 + MER58 DNA MER1_type 1 87 -2333 700 43 11 11 chr1 128645760 128645852 -114018501 - L1PA6 LINE L1 -25 6129 6038 10576 61 7 27 chr1 128645858 128647599 -114016754 - L1PA6 LINE L1 -467 5687 3962 1432 125 71 12 chr1 128647680 128647920 -114016433 - Tigger2 DNA MER2_type 0 2718 2465 4046 160 45 1 chr1 128647992 128648703 -114015650 - Tigger2 DNA MER2_type -1976 742 1 316 288 118 12 chr1 128649711 128649881 -114014472 + L1ME3 LINE L1 5760 5947 -223 1291 274 127 44 chr1 128650196 128651037 -114013316 + HAL1 LINE L1 992 1902 -605 1969 117 57 0 chr1 128651887 128652169 -114012184 - AluSx SINE Alu -14 298 1 580 228 56 41 chr1 128652177 128652374 -114011979 + L1ME3 LINE L1 5917 6116 -46 637 312 159 16 chr1 128652663 128653172 -114011181 - L1MC4a LINE L1 -1889 5919 5338 13719 132 35 41 chr1 128653830 128656240 -114008113 + Tigger1 DNA MER2_type 23 2418 0 2178 128 0 0 chr1 128657174 128657479 -114006874 + AluSx SINE Alu 3 307 -5 668 241 162 13 chr1 128657637 128657865 -114006488 - MIR SINE MIR 0 262 1 204 296 0 0 chr1 128658267 128658311 -114006042 + L2 LINE L2 3219 3262 -10 452 271 85 8 chr1 128658494 128658612 -114005741 + L2 LINE L2 3146 3272 0 183 274 145 0 chr1 128661176 128661238 -114003115 + MIR3 SINE MIR 93 163 -45 755 163 30 48 chr1 128661273 128661439 -114002914 + MER106B DNA MER1_type 897 1059 0 303 311 56 22 chr1 128662107 128662197 -114002156 - L2 LINE L2 -26 3246 3154 223 135 39 0 chr1 128663404 128663456 -114000897 + (TA)n Simple_repeat Simple_repeat 2 55 0 470 269 152 0 chr1 128665800 128665945 -113998408 + MIR SINE MIR 93 259 -3 735 248 43 6 chr1 128666877 128667038 -113997315 - MER5A DNA MER1_type -14 175 9 342 248 147 18 chr1 128667359 128667468 -113996885 - L2 LINE L2 -1 3312 3190 1553 246 83 43 chr1 128668000 128668737 -113995616 - L1MC4 LINE L1 -17 8025 7260 352 306 97 22 chr1 128668999 128669133 -113995220 - MER117 DNA MER1_type -1 196 53 183 146 0 0 chr1 128669135 128669176 -113995177 + (TA)n Simple_repeat Simple_repeat 2 42 0 320 120 120 53 chr1 128669506 128669581 -113994772 - MER116 DNA Mariner 0 80 1 233 350 40 0 chr1 128670350 128670450 -113993903 - L2 LINE L2 -189 3083 2980 255 224 0 0 chr1 128670617 128670666 -113993687 + HAL1 LINE L1 793 841 -1666 1119 217 192 21 chr1 128670775 128671203 -113993150 + HAL1 LINE L1 1296 1796 -711 261 236 150 24 chr1 128671213 128671340 -113993013 + HAL1 LINE L1 1868 2010 -497 495 185 156 0 chr1 128672244 128672379 -113991974 + L1ME LINE L1 5657 5812 -309 310 344 69 6 chr1 128672698 128672858 -113991495 + L1ME LINE L1 5056 5225 -921 238 275 146 53 chr1 128672859 128673106 -113991247 + L1ME LINE L1 5279 5548 -573 25 0 0 0 chr1 128673604 128673629 -113990724 + AT_rich Low_complexity Low_complexity 1 25 0 505 273 30 30 chr1 128673735 128673933 -113990420 - L1MC/D LINE L1 -2012 5796 5599 320 274 88 44 chr1 128674369 128674482 -113989871 - L2 LINE L2 -4 3309 3192 188 141 42 84 chr1 128674570 128674628 -113989725 + L2 LINE L2 3083 3139 -174 2033 163 30 11 chr1 128674628 128674996 -113989357 - THE1C LTR MaLR 0 375 1 188 141 42 84 chr1 128674996 128675008 -113989345 + L2 LINE L2 3139 3150 -163 705 187 8 8 chr1 128675025 128675148 -113989205 - FLAM_C SINE Alu -20 123 1 435 250 121 0 chr1 128675156 128675280 -113989073 + L2 LINE L2 3167 3305 -8 545 300 77 39 chr1 128675388 128675648 -113988705 + L2 LINE L2 3042 3311 -2 1113 151 27 11 chr1 128676008 128676193 -113988160 - MER5A DNA MER1_type -1 188 1 306 0 0 0 chr1 128676424 128676458 -113987895 + (CA)n Simple_repeat Simple_repeat 2 35 0 449 254 164 16 chr1 128676680 128676869 -113987484 - L1ME2 LINE L1 -44 6120 5904 789 135 169 0 chr1 128676871 128677019 -113987334 + L1MB2 LINE L1 5991 6163 -8 618 179 57 0 chr1 128677023 128677163 -113987190 - L1ME2 LINE L1 -273 5893 5746 39 68 0 0 chr1 128677292 128677366 -113986987 + AT_rich Low_complexity Low_complexity 1 74 0 2358 94 3 0 chr1 128677754 128678062 -113986291 + AluSx SINE Alu 1 309 -3 1268 154 228 21 chr1 128678790 128679075 -113985278 - MER2 DNA MER2_type 0 344 1 1420 129 184 0 chr1 128679343 128679621 -113984732 + L1MB2 LINE L1 5843 6171 0 413 319 121 13 chr1 128679975 128680207 -113984146 + L3 LINE CR1 214 470 -1107 4284 238 75 29 chr1 128680218 128681626 -113982727 + L1MEc LINE L1 37 1508 -4888 5031 187 11 6 chr1 128682228 128685860 -113978493 + L1PB1 LINE L1 2354 6147 -4 963 229 95 4 chr1 128685886 128686246 -113978107 + L1M4 LINE L1 3702 4109 -2037 189 0 0 0 chr1 128689406 128689427 -113974926 + (TTA)n Simple_repeat Simple_repeat 2 22 0 242 294 0 0 chr1 128689888 128689939 -113974414 - L2 LINE L2 -12 3260 3210 360 0 0 0 chr1 128690515 128690555 -113973798 + (TC)n Simple_repeat Simple_repeat 2 41 0 261 0 0 0 chr1 128690554 128690583 -113973770 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 888 202 49 6 chr1 128690862 128691045 -113973308 - MER58A DNA MER1_type -30 194 4 914 157 31 61 chr1 128693425 128693628 -113970725 - L1MB4 LINE L1 -1 6179 5982 2566 89 22 6 chr1 128693628 128693986 -113970367 - THE1B LTR MaLR 0 364 1 914 157 31 61 chr1 128693986 128694011 -113970342 - L1MB4 LINE L1 -198 5982 5958 222 321 179 0 chr1 128694013 128694097 -113970256 + MIR SINE MIR 94 192 -70 194 270 22 56 chr1 128694219 128694308 -113970045 - MIR3 SINE MIR -22 186 101 3504 194 120 23 chr1 128694558 128695846 -113968507 - L1ME1 LINE L1 -4 6162 4755 640 136 0 68 chr1 128695856 128695988 -113968365 + MER20 DNA MER1_type 1 123 -96 689 252 111 71 chr1 128695992 128697051 -113967302 - L1M4 LINE L1 -5425 1434 8 2097 82 15 0 chr1 128697116 128697386 -113966967 - AluSp SINE Alu -15 298 25 358 121 0 0 chr1 128697386 128697444 -113966909 - AluS SINE Alu -242 58 1 471 280 34 0 chr1 128698020 128698138 -113966215 + MIR3 SINE MIR 38 159 -49 185 296 71 51 chr1 128698173 128698271 -113966082 - L2 LINE L2 -6 3307 3208 225 135 22 45 chr1 128698874 128698963 -113965390 + CT-rich Low_complexity Low_complexity 1 87 0 243 304 43 0 chr1 128699426 128699495 -113964858 - L2 LINE L2 -15 3257 3186 3771 245 130 28 chr1 128699922 128700056 -113964297 - L2 LINE L2 -396 2918 2799 1875 117 46 7 chr1 128700056 128700338 -113964015 + AluJb SINE Alu 1 293 -19 3771 245 130 28 chr1 128700338 128701671 -113962682 - L2 LINE L2 -515 2799 1276 2263 118 3 0 chr1 128701785 128702089 -113962264 + AluSq SINE Alu 7 311 -2 1725 179 17 0 chr1 128702542 128702832 -113961521 + AluJo SINE Alu 1 295 -17 363 278 30 0 chr1 128703540 128703673 -113960680 - LTR67 LTR ERVL -7 550 414 449 247 76 38 chr1 128703793 128703951 -113960402 + MIR SINE MIR 31 194 -68 565 256 35 23 chr1 128704200 128704372 -113959981 - MIR SINE MIR -3 259 86 302 322 59 17 chr1 128705996 128706114 -113958239 - L2 LINE L2 -1 3271 3149 857 308 117 30 chr1 128706322 128706991 -113957362 - L2 LINE L2 0 3313 2596 509 263 56 19 chr1 128706998 128707158 -113957195 - L2 LINE L2 -893 2421 2256 350 191 84 180 chr1 128707326 128707693 -113956660 - L1M4 LINE L1 -2924 3222 2891 285 222 40 0 chr1 128707776 128707875 -113956478 + L1MEd LINE L1 897 999 -5120 464 242 26 35 chr1 128708937 128709078 -113955275 - MIR SINE MIR -64 144 16 255 265 176 0 chr1 128709210 128709312 -113955041 + L3 LINE CR1 788 907 -670 1165 181 98 78 chr1 128709313 128709713 -113954640 + HAL1 LINE L1 1219 1609 -898 1846 146 0 0 chr1 128709713 128709988 -113954365 + AluJb SINE Alu 7 281 -31 207 0 0 0 chr1 128709991 128710014 -113954339 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1165 181 98 78 chr1 128710014 128710056 -113954297 + HAL1 LINE L1 1610 1674 -833 26 0 0 0 chr1 128710182 128710208 -113954145 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 128711079 128711100 -113953253 + AT_rich Low_complexity Low_complexity 1 21 0 1898 129 0 25 chr1 128711305 128711583 -113952770 - AluSx SINE Alu -39 273 3 2015 0 0 0 chr1 128712103 128712312 -113952041 + AluYa5 SINE Alu 92 300 -11 314 282 19 71 chr1 128712465 128712731 -113951622 + L1MEd LINE L1 981 1232 -4887 2229 126 3 3 chr1 128712740 128713050 -113951303 + AluSx SINE Alu 1 310 -2 300 267 37 7 chr1 128714171 128714306 -113950047 + L1MEd LINE L1 2200 2338 -3791 22 35 0 0 chr1 128714351 128714380 -113949973 + AT_rich Low_complexity Low_complexity 1 29 0 2246 103 7 3 chr1 128714421 128714722 -113949631 - AluSx SINE Alu -10 302 1 2467 159 30 26 chr1 128715396 128715749 -113948604 - L1PB4 LINE L1 0 6156 5799 249 33 0 0 chr1 128715749 128715779 -113948574 + (TG)n Simple_repeat Simple_repeat 2 31 0 2467 159 30 26 chr1 128715779 128715889 -113948464 - L1PB4 LINE L1 -357 5799 5691 5137 211 25 16 chr1 128715889 128717152 -113947201 + L1MEd LINE L1 2272 3546 -2583 1736 179 10 3 chr1 128717637 128717934 -113946419 - AluJb SINE Alu -13 299 1 7220 50 6 0 chr1 128718092 128719018 -113945335 - L1PA7 LINE L1 0 6154 5225 695 263 44 15 chr1 128719019 128719289 -113945064 + HAL1 LINE L1 1743 2020 -487 306 254 118 50 chr1 128719844 128720123 -113944230 + HAL1 LINE L1 2014 2311 -196 768 212 71 88 chr1 128720386 128721015 -113943338 - L1ME LINE L1 -552 5612 4981 1169 224 62 7 chr1 128721025 128721315 -113943038 - MLT1E3 LTR MaLR 0 624 319 724 245 99 5 chr1 128721329 128721521 -113942832 - MLT1E3 LTR MaLR -383 210 1 2011 193 22 24 chr1 128721529 128721559 -113942794 + L1ME2 LINE L1 5608 5637 -527 2144 143 76 15 chr1 128721559 128721902 -113942451 - THE1B LTR MaLR 0 364 1 11716 79 10 58 chr1 128721902 128723562 -113940791 - THE1B-int LTR MaLR 0 1580 1 2087 147 72 23 chr1 128723562 128723909 -113940444 - THE1B LTR MaLR 0 364 1 2011 193 22 24 chr1 128723909 128724328 -113940025 + L1ME2 LINE L1 5634 6058 -106 525 291 21 21 chr1 128724437 128724626 -113939727 - MER5A DNA MER1_type 0 189 1 608 302 62 0 chr1 128725620 128725812 -113938541 - MIR SINE MIR -3 259 56 225 323 0 0 chr1 128726134 128726196 -113938157 - MIR SINE MIR -90 172 111 192 266 89 13 chr1 128726806 128726885 -113937468 - MIR SINE MIR -61 147 63 268 246 0 29 chr1 128727327 128727396 -113936957 + L2 LINE L2 3192 3258 -14 286 289 93 0 chr1 128727869 128727966 -113936387 + MLT1I LTR MaLR 9 114 -295 538 281 56 35 chr1 128728168 128728399 -113935954 - MLT1J LTR MaLR -259 252 17 396 296 19 0 chr1 128728532 128728640 -113935713 + MIR3 SINE MIR 82 191 -17 517 253 156 0 chr1 128728647 128728801 -113935552 + MIR SINE MIR 84 261 -1 204 272 192 8 chr1 128729114 128729239 -113935114 + L2 LINE L2 3147 3294 -19 286 211 40 26 chr1 128730060 128730136 -113934217 - MIR SINE MIR -119 143 67 24 32 0 0 chr1 128730273 128730304 -113934049 + AT_rich Low_complexity Low_complexity 1 31 0 273 277 31 0 chr1 128730815 128730880 -113933473 - L2 LINE L2 0 3272 3206 335 353 47 20 chr1 128731500 128731650 -113932703 - MIR SINE MIR -101 161 8 224 272 65 43 chr1 128731683 128731775 -113932578 + L3 LINE CR1 708 801 -776 378 283 152 21 chr1 128732030 128732221 -113932132 + MIR SINE MIR 20 235 -27 259 344 123 0 chr1 128732248 128732370 -113931983 + L3 LINE CR1 1240 1376 -201 580 322 59 4 chr1 128732564 128732819 -113931534 - L1ME LINE L1 -421 5700 5432 448 250 148 41 chr1 128732839 128733035 -113931318 + MIR SINE MIR 45 261 -1 29 0 0 0 chr1 128733040 128733069 -113931284 + AT_rich Low_complexity Low_complexity 1 29 0 196 196 18 89 chr1 128733286 128733342 -113931011 + MER5B DNA MER1_type 17 68 -110 332 204 71 51 chr1 128733608 128733706 -113930647 + MIR3 SINE MIR 74 173 -35 241 182 212 0 chr1 128733757 128733823 -113930530 - MER103 DNA DNA -63 103 24 2302 163 63 36 chr1 128733823 128734350 -113930003 + L1MB7 LINE L1 5634 6174 -10 299 318 56 32 chr1 128734351 128734500 -113929853 + MIR SINE MIR 16 160 -67 221 293 73 0 chr1 128734568 128734650 -113929703 - MIR SINE MIR -126 136 49 242 265 46 73 chr1 128734962 128735113 -113929240 - MIR SINE MIR -4 258 112 637 289 100 8 chr1 128735168 128735417 -113928936 - L1ME4a LINE L1 -287 5834 5563 552 300 38 67 chr1 128735843 128736053 -113928300 - MIR SINE MIR -57 205 2 1890 178 0 0 chr1 128736608 128736906 -113927447 + AluJb SINE Alu 1 298 -14 244 370 39 24 chr1 128736919 128737046 -113927307 + L2 LINE L2 3182 3310 -3 838 188 7 0 chr1 128737432 128737576 -113926777 - MER5A DNA MER1_type -2 187 43 234 254 0 14 chr1 128738606 128738677 -113925676 + MER103 DNA DNA 14 83 -83 309 68 0 0 chr1 128739013 128739057 -113925296 + (CA)n Simple_repeat Simple_repeat 2 45 0 185 217 58 117 chr1 128741054 128741174 -113923179 + MIR3 SINE MIR 43 155 -53 423 0 0 0 chr1 128741538 128741585 -113922768 + (TG)n Simple_repeat Simple_repeat 1 47 0 239 268 126 67 chr1 128741720 128741989 -113922364 + L2 LINE L2 2672 2956 -358 717 162 17 0 chr1 128742237 128742410 -113921943 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 264 258 15 0 chr1 128742721 128742787 -113921566 + MIR SINE MIR 66 132 -130 455 319 97 5 chr1 128743222 128743438 -113920915 + MIR SINE MIR 19 254 -8 238 301 98 24 chr1 128743956 128744079 -113920274 - L2 LINE L2 -3 3269 3138 231 203 0 0 chr1 128744193 128744257 -113920096 + (CA)n Simple_repeat Simple_repeat 1 64 0 643 289 78 55 chr1 128744525 128744871 -113919482 - L2 LINE L2 -9 3263 2910 503 303 51 15 chr1 128745677 128745872 -113918481 - MIR SINE MIR -2 260 59 830 253 91 5 chr1 128746597 128746818 -113917535 + MIR SINE MIR 2 241 -21 276 172 0 69 chr1 128746837 128746895 -113917458 + MIR3 SINE MIR 111 164 -44 288 229 0 0 chr1 128747072 128747155 -113917198 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 2133 137 60 53 chr1 128747156 128747232 -113917121 - Tigger2a DNA MER2_type -2275 433 359 2438 110 34 6 chr1 128747232 128747586 -113916767 - THE1B LTR MaLR 0 364 1 2133 137 60 53 chr1 128747586 128747939 -113916414 - Tigger2a DNA MER2_type -2349 359 1 321 302 0 0 chr1 128747943 128748122 -113916231 + (TG)n Simple_repeat Simple_repeat 2 180 0 203 273 17 23 chr1 128748080 128748256 -113916097 + (TATG)n Simple_repeat Simple_repeat 1 175 0 * 369 243 24 12 chr1 128748278 128748447 -113915906 + (TATG)n Simple_repeat Simple_repeat 4 174 0 351 323 73 16 chr1 128748734 128748858 -113915495 - MIR SINE MIR -118 144 14 303 311 83 30 chr1 128749134 128749266 -113915087 + MIR3 SINE MIR 8 146 -62 480 319 49 0 chr1 128749365 128749528 -113914825 + MIR SINE MIR 92 262 0 2310 98 7 0 chr1 128749538 128749835 -113914518 - AluSg SINE Alu -11 299 1 308 262 2 0 chr1 128750135 128750222 -113914131 + MLT1J2 LTR MaLR 320 396 -13 509 295 58 13 chr1 128752262 128752486 -113911867 + L2 LINE L2 2709 2942 -372 215 355 107 0 chr1 128752465 128752586 -113911767 + L2 LINE L2 3180 3313 0 * 236 318 135 35 chr1 128752637 128753014 -113911339 - L2 LINE L2 -401 2913 2499 3188 150 28 4 chr1 128753063 128753564 -113910789 + MLT2B2 LTR ERVL 1 513 -2 615 260 115 10 chr1 128753689 128753897 -113910456 + MIR SINE MIR 23 252 -10 222 277 84 24 chr1 128754634 128754717 -113909636 + MIR SINE MIR 63 150 -112 319 279 25 49 chr1 128754769 128754891 -113909462 - MIR SINE MIR -42 220 102 213 157 60 12 chr1 128755249 128755332 -113909021 + GA-rich Low_complexity Low_complexity 3 89 0 324 301 12 0 chr1 128755407 128755490 -113908863 + MIR SINE MIR 31 114 -148 340 305 136 7 chr1 128756261 128756415 -113907938 - MIR3 SINE MIR -23 185 12 1572 174 42 48 chr1 128756684 128756818 -113907535 + AluJo SINE Alu 1 134 -178 2525 57 0 7 chr1 128756818 128757115 -113907238 + AluY SINE Alu 1 295 -16 1572 174 42 48 chr1 128757115 128757290 -113907063 + AluJo SINE Alu 134 308 -4 289 328 8 37 chr1 128757743 128757877 -113906476 + MER5A DNA MER1_type 60 189 0 2732 23 0 3 chr1 128758861 128759165 -113905188 + AluY SINE Alu 1 303 -8 1983 151 3 10 chr1 128759229 128759527 -113904826 + AluJb SINE Alu 1 296 -16 207 305 30 99 chr1 128759907 128760038 -113904315 - MIR SINE MIR -30 232 111 307 238 36 0 chr1 128760330 128760414 -113903939 - MIR3 SINE MIR -18 190 104 290 240 223 58 chr1 128760424 128760545 -113903808 - MIR SINE MIR 0 262 122 245 250 97 5 chr1 128761211 128761323 -113903030 - MLT1L LTR MaLR -355 233 110 416 222 26 8 chr1 128762051 128762168 -113902185 - Charlie1 DNA MER1_type 0 2761 2643 742 245 182 9 chr1 128762262 128762609 -113901744 + LTR33 LTR ERVL 115 521 0 468 198 129 0 chr1 128763178 128763294 -113901059 - MER5A DNA MER1_type 0 189 59 259 208 91 13 chr1 128763886 128763963 -113900390 - MIR SINE MIR -67 141 59 192 152 0 0 chr1 128763992 128764025 -113900328 + T-rich Low_complexity Low_complexity 1 33 0 952 248 113 90 chr1 128764299 128764823 -113899530 + LTR67 LTR ERVL 20 555 -2 440 225 7 94 chr1 128765310 128765448 -113898905 - MIR SINE MIR -54 208 83 443 75 0 15 chr1 128766000 128766067 -113898286 + L1PA6 LINE L1 6089 6154 0 250 24 71 0 chr1 128766098 128766140 -113898213 + A-rich Low_complexity Low_complexity 3 47 0 523 189 0 27 chr1 128766155 128766266 -113898087 + L1ME3A LINE L1 6041 6148 -22 24 0 0 0 chr1 128766818 128766842 -113897511 + AT_rich Low_complexity Low_complexity 1 24 0 3058 237 64 7 chr1 128767257 128768338 -113896015 + L1ME3 LINE L1 5014 6154 -8 523 318 39 47 chr1 128768690 128768945 -113895408 - MIR SINE MIR -9 253 1 275 213 102 65 chr1 128773362 128773470 -113890883 + L2 LINE L2 3176 3287 -26 2264 116 0 3 chr1 128774200 128774501 -113889852 - AluSc SINE Alu -9 300 1 744 185 86 30 chr1 128775154 128775233 -113889120 - Charlie5 DNA MER1_type 0 2585 2512 1736 172 0 20 chr1 128775233 128775529 -113888824 + AluJo SINE Alu 1 290 -22 744 185 86 30 chr1 128775529 128775681 -113888672 - Charlie5 DNA MER1_type -73 2512 2341 408 230 71 9 chr1 128775808 128775921 -113888432 + L2 LINE L2 3193 3312 -1 517 278 11 61 chr1 128778994 128779174 -113885179 + MIR SINE MIR 54 224 -38 275 257 68 55 chr1 128779785 128779921 -113884432 + MIR SINE MIR 72 209 -32 386 267 209 26 chr1 128782693 128783210 -113881143 - L1ME LINE L1 -307 5814 5172 226 212 118 12 chr1 128783531 128783616 -113880737 - L1 LINE L1 -1332 4814 4721 2181 138 3 32 chr1 128784247 128784594 -113879759 + MER1B DNA MER1_type 1 337 0 330 45 0 0 chr1 128785994 128786038 -113878315 + (TG)n Simple_repeat Simple_repeat 2 45 0 351 179 143 0 chr1 128786343 128786427 -113877926 - MIR SINE MIR -41 221 126 195 42 0 0 chr1 128787839 128787863 -113876490 + (T)n Simple_repeat Simple_repeat 1 24 0 208 143 0 0 chr1 128788761 128788796 -113875557 + (T)n Simple_repeat Simple_repeat 1 35 0 186 43 0 0 chr1 128790374 128790397 -113873956 + (TG)n Simple_repeat Simple_repeat 2 24 0 258 32 0 0 chr1 128791523 128791554 -113872799 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr1 128792029 128792051 -113872302 + AT_rich Low_complexity Low_complexity 1 22 0 243 285 77 62 chr1 128795142 128795272 -113869081 - MIR SINE MIR -96 166 35 227 281 281 15 chr1 128795495 128795698 -113868655 - MIR SINE MIR -5 257 1 215 283 21 6 chr1 128797207 128797297 -113867056 - MIR SINE MIR -50 158 68 1048 224 156 0 chr1 128798074 128798369 -113865984 - MER58B DNA MER1_type 0 341 1 873 114 0 0 chr1 128799359 128799473 -113864880 + FLAM_C SINE Alu 1 114 -29 305 290 154 15 chr1 128799663 128799869 -113864484 + MIR SINE MIR 4 238 -24 253 304 68 47 chr1 128799955 128800103 -113864250 + MER5A DNA MER1_type 37 187 -2 1918 123 3 87 chr1 128801360 128801694 -113862659 + AluSx SINE Alu 1 306 -6 359 291 81 41 chr1 128801847 128802019 -113862334 + MIR3 SINE MIR 6 184 -24 365 248 47 47 chr1 128802602 128802731 -113861622 - L2 LINE L2 -604 2710 2582 2366 93 0 0 chr1 128802956 128803266 -113861087 - AluSq SINE Alu -3 310 1 362 255 98 49 chr1 128803349 128803533 -113860820 - MER20 DNA MER1_type 0 219 27 376 188 14 167 chr1 128803717 128803855 -113860498 - HAL1 LINE L1 -857 1650 1534 602 214 42 27 chr1 128805472 128805671 -113858682 - L1PBa LINE L1 -964 2259 2097 327 234 0 0 chr1 128805673 128805818 -113858535 + (TG)n Simple_repeat Simple_repeat 2 146 0 2196 270 92 51 chr1 128805832 128807132 -113857221 - L1PBa LINE L1 -1109 2114 761 271 215 0 15 chr1 128807130 128807195 -113857158 - L1MC2 LINE L1 -435 5909 5846 * 1980 135 43 21 chr1 128807197 128807381 -113856972 - L1MC2 LINE L1 -562 5771 5575 206 32 32 0 chr1 128807381 128807412 -113856941 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1980 135 43 21 chr1 128807412 128807552 -113856801 - L1MC2 LINE L1 -758 5575 5440 * 3457 228 76 3 chr1 128807539 128808386 -113855967 - L1MEc LINE L1 -5454 942 35 753 232 40 11 chr1 128809065 128809242 -113855111 - MIR SINE MIR 0 262 81 309 311 57 51 chr1 128809683 128809860 -113854493 + MIR SINE MIR 85 262 0 2137 115 0 0 chr1 128811080 128811385 -113852968 - AluSg SINE Alu -5 305 1 383 250 32 16 chr1 128811619 128811743 -113852610 - L1ME3A LINE L1 -205 5965 5840 211 271 0 0 chr1 128811782 128811830 -113852523 + MIR SINE MIR 87 134 -74 264 237 227 0 chr1 128812046 128812143 -113852210 - L2 LINE L2 0 3272 3154 240 35 0 0 chr1 128812149 128812178 -113852175 + (GA)n Simple_repeat Simple_repeat 1 29 0 2528 64 0 0 chr1 128812365 128812678 -113851675 + L1PA5 LINE L1 5842 6154 0 2503 223 36 4 chr1 128812733 128813281 -113851072 - MLT1F1 LTR MaLR 0 567 2 420 152 0 0 chr1 128814435 128814501 -113849852 - MER53 DNA DNA -2 187 122 200 325 74 43 chr1 128815187 128815350 -113849003 - L2 LINE L2 -224 3048 2881 2348 211 74 34 chr1 128815465 128816033 -113848320 - MLT1E LTR MaLR 0 593 3 215 365 85 28 chr1 128817333 128817544 -113846809 + L2 LINE L2 2856 3078 -194 245 257 0 57 chr1 128817551 128817621 -113846732 + L2 LINE L2 3205 3270 -2 649 184 29 15 chr1 128817624 128817760 -113846593 + MIR3 SINE MIR 69 206 -2 465 223 20 88 chr1 128818606 128818754 -113845599 - MIR SINE MIR -68 140 3 318 148 0 0 chr1 128819150 128819204 -113845149 + (CA)n Simple_repeat Simple_repeat 2 55 0 280 245 158 43 chr1 128819466 128819605 -113844748 - MIR3 SINE MIR -48 160 6 313 324 50 36 chr1 128819715 128819934 -113844419 - MIR SINE MIR -33 229 8 246 351 83 24 chr1 128819974 128820142 -113844211 - MIR SINE MIR -71 191 14 538 243 40 26 chr1 128820364 128820516 -113843837 - MER58B DNA MER1_type -17 324 171 301 330 241 28 chr1 128820760 128820972 -113843381 - L2 LINE L2 -1 3271 3015 38 0 0 0 chr1 128821599 128821637 -113842716 + AT_rich Low_complexity Low_complexity 1 38 0 272 214 18 0 chr1 128821646 128821702 -113842651 - L2 LINE L2 0 3272 3216 587 229 28 7 chr1 128822786 128822930 -113841423 + MER117 DNA MER1_type 4 150 -47 272 269 13 26 chr1 128823204 128823282 -113841071 - L2 LINE L2 -1 3312 3236 21 0 0 0 chr1 128824007 128824028 -113840325 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr1 128824144 128824168 -113840185 + (CA)n Simple_repeat Simple_repeat 2 25 0 304 228 73 147 chr1 128824415 128824554 -113839799 + MIR SINE MIR 3 111 -151 2026 128 0 7 chr1 128824554 128824860 -113839493 + AluSc SINE Alu 1 304 -5 304 228 73 147 chr1 128824860 128824982 -113839371 + MIR SINE MIR 111 241 -21 2600 147 47 0 chr1 128825477 128825884 -113838469 + MSTB LTR MaLR 1 426 0 8881 176 21 15 chr1 128825884 128827525 -113836828 + MSTB-int LTR MaLR 1 1651 0 2590 156 17 7 chr1 128827525 128827947 -113836406 + MSTB LTR MaLR 1 426 0 466 291 70 35 chr1 128828353 128828525 -113835828 + MIR3 SINE MIR 24 201 -7 626 303 63 91 chr1 128828784 128828838 -113835515 - L1MEc LINE L1 -5529 867 813 2192 98 3 0 chr1 128828838 128829134 -113835219 - AluSc SINE Alu -12 297 1 626 303 63 91 chr1 128829134 128829915 -113834438 - L1MEc LINE L1 -5583 813 55 384 244 37 126 chr1 128829923 128829982 -113834371 + HAL1 LINE L1 2244 2307 -200 1637 140 52 25 chr1 128829982 128830268 -113834085 - AluJb SINE Alu -18 294 1 384 244 37 126 chr1 128830268 128830479 -113833874 + HAL1 LINE L1 2307 2490 -17 805 206 6 11 chr1 128831602 128831777 -113832576 - AluJo SINE Alu -15 297 124 1262 196 161 0 chr1 128832107 128832407 -113831946 + AluJb SINE Alu 1 342 0 991 206 5 0 chr1 128832537 128832726 -113831627 - L1MD2 LINE L1 -12 6347 6158 711 220 22 63 chr1 128833310 128833533 -113830820 + MLT1H LTR MaLR 139 352 -197 2144 118 0 0 chr1 128833878 128834174 -113830179 - AluSx SINE Alu -16 296 1 346 153 0 0 chr1 128834283 128834342 -113830011 + MER91A DNA MER1_type 1 59 -137 477 298 33 28 chr1 128834836 128835017 -113829336 - MIR3 SINE MIR -8 200 19 472 277 36 1 chr1 128835518 128835671 -113828682 + MIR3 SINE MIR 27 190 -18 306 184 0 0 chr1 128836356 128836405 -113827948 + L2 LINE L2 3221 3269 -3 186 294 0 0 chr1 128836559 128836610 -113827743 + MIR SINE MIR 91 141 -67 264 179 63 95 chr1 128836971 128837066 -113827287 - L2 LINE L2 0 3313 3222 318 263 111 0 chr1 128837167 128837266 -113827087 - MIR SINE MIR -72 190 81 385 331 78 0 chr1 128838033 128838187 -113826166 + MIR SINE MIR 2 167 -95 201 74 0 0 chr1 128839016 128839043 -113825310 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 692 239 166 24 chr1 128839938 128840185 -113824168 - L3 LINE CR1 -109 1468 1187 227 268 155 0 chr1 128840379 128840450 -113823903 - MIR3 SINE MIR 0 208 127 2307 96 0 0 chr1 128840955 128841267 -113823086 + AluSx SINE Alu 1 312 0 2401 77 0 0 chr1 128841323 128841634 -113822719 + AluY SINE Alu 1 311 0 226 137 39 20 chr1 128841636 128841687 -113822666 - L1ME LINE L1 -238 5883 5832 204 265 7 20 chr1 128841712 128841862 -113822491 + GA-rich Low_complexity Low_complexity 1 148 0 240 344 21 0 chr1 128842132 128842225 -113822128 - L3 LINE CR1 -392 1185 1091 263 282 94 8 chr1 128843218 128843335 -113821018 + MIR SINE MIR 1 127 -135 389 342 98 11 chr1 128845582 128845766 -113818587 + MIR SINE MIR 32 231 -31 553 225 72 7 chr1 128846597 128846735 -113817618 - L2 LINE L2 0 3313 3167 406 272 110 46 chr1 128846846 128847019 -113817334 - MIR SINE MIR -70 192 9 206 245 19 0 chr1 128847540 128847593 -113816760 + L2 LINE L2 3217 3270 -2 234 0 0 0 chr1 128848403 128848429 -113815924 + (T)n Simple_repeat Simple_repeat 1 26 0 375 173 162 151 chr1 128848563 128848742 -113815611 + MIR SINE MIR 34 214 -48 943 271 107 13 chr1 128848745 128849118 -113815235 - L2 LINE L2 -8 3305 2898 276 308 140 0 chr1 128849897 128850004 -113814349 + MIR SINE MIR 135 256 -6 233 280 93 33 chr1 128850498 128850648 -113813705 - MLT1K LTR MaLR -18 570 412 233 272 98 11 chr1 128850731 128850823 -113813530 - MLT1K LTR MaLR -306 282 183 466 220 73 129 chr1 128851600 128851941 -113812412 - MER97c DNA MER1_type? -1 1089 768 24 0 0 0 chr1 128852069 128852093 -113812260 + AT_rich Low_complexity Low_complexity 1 24 0 6322 125 12 19 chr1 128852492 128853517 -113810836 + L1MA4A LINE L1 5280 6297 -6 2791 186 63 6 chr1 128853683 128854222 -113810131 - MER97c DNA MER1_type? -520 570 1 375 23 0 0 chr1 128854382 128854426 -113809927 + (CA)n Simple_repeat Simple_repeat 2 45 0 1734 172 0 40 chr1 128855580 128855882 -113808471 + AluJo SINE Alu 1 290 -22 353 91 39 26 chr1 128857144 128857221 -113807132 + CT-rich Low_complexity Low_complexity 3 80 0 1197 67 11 11 chr1 128857226 128857404 -113806949 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 195 42 0 0 chr1 128857446 128857470 -113806883 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 1870 122 18 21 chr1 128857471 128857750 -113806603 - AluSx SINE Alu -34 278 1 234 0 0 0 chr1 128858249 128858275 -113806078 + (T)n Simple_repeat Simple_repeat 1 26 0 422 221 308 0 chr1 128858535 128858707 -113805646 + MIR SINE MIR 32 256 -6 1838 152 0 42 chr1 128858714 128859023 -113805330 - AluJo SINE Alu -16 296 1 189 107 0 0 chr1 128859080 128859108 -113805245 + (TG)n Simple_repeat Simple_repeat 1 28 0 363 246 142 8 chr1 128859132 128859266 -113805087 + L2 LINE L2 3146 3297 -16 356 200 11 0 chr1 128859268 128859363 -113804990 + (TA)n Simple_repeat Simple_repeat 1 96 0 202 208 75 0 chr1 128860685 128860738 -113803615 - L2 LINE L2 -3 3269 3213 207 321 48 0 chr1 128860770 128860854 -113803499 - MIR SINE MIR -19 243 156 550 226 104 140 chr1 128860854 128861239 -113803114 + MLT1J LTR MaLR 3 373 -138 318 333 123 57 chr1 128861639 128861957 -113802396 - L2 LINE L2 -17 3255 2917 2016 161 12 59 chr1 128862633 128863055 -113801298 + LTR47A LTR ERVL 1 402 -50 328 337 116 12 chr1 128864194 128864366 -113799987 - L2 LINE L2 -2 3270 3081 30 45 0 0 chr1 128864513 128864557 -113799796 + AT_rich Low_complexity Low_complexity 1 44 0 528 268 7 7 chr1 128864631 128864769 -113799584 + MIR SINE MIR 17 154 -108 593 332 12 33 chr1 128864848 128865092 -113799261 + MIR SINE MIR 23 261 -1 371 251 73 31 chr1 128865468 128865645 -113798708 - L1ME3A LINE L1 -312 5809 5661 748 304 25 4 chr1 128865810 128866053 -113798300 + MIR SINE MIR 5 252 -10 704 262 101 10 chr1 128866419 128866779 -113797574 + L2 LINE L2 2678 3059 -254 312 247 0 0 chr1 128867026 128867103 -113797250 + L2 LINE L2 3236 3312 -1 779 209 89 0 chr1 128867466 128867624 -113796729 + MER45A DNA AcHobo 1 172 -6 211 128 0 64 chr1 128867996 128868043 -113796310 + (TTTTTG)n Simple_repeat Simple_repeat 6 49 0 23 0 0 0 chr1 128868339 128868362 -113795991 + AT_rich Low_complexity Low_complexity 1 23 0 7374 48 0 0 chr1 128868362 128869915 -113794438 - L1PA4 LINE L1 -11 6144 4590 591 316 88 9 chr1 128870295 128870615 -113793738 + L2 LINE L2 2422 2766 -548 968 205 5 65 chr1 128870660 128870875 -113793478 - MER20 DNA MER1_type -17 202 1 496 229 12 94 chr1 128871151 128871321 -113793032 + L2 LINE L2 3158 3313 0 191 222 19 19 chr1 128871335 128871389 -113792964 - L2 LINE L2 -95 3218 3165 532 216 18 9 chr1 128871762 128871873 -113792480 - MER81 DNA DNA -1 113 2 240 282 14 0 chr1 128871950 128872021 -113792332 + MIR SINE MIR 30 101 -107 1997 237 43 34 chr1 128872038 128872595 -113791758 + MER74B LTR ERVL 56 617 -5 515 107 10 97 chr1 128873439 128873542 -113790811 + MER53 DNA DNA 96 189 0 300 367 83 0 chr1 128875062 128875171 -113789182 - MER91A DNA MER1_type -43 153 36 350 222 56 11 chr1 128875234 128875324 -113789029 - MIR SINE MIR -1 261 168 198 324 108 0 chr1 128875773 128875847 -113788506 - MIR SINE MIR -162 100 19 244 370 43 27 chr1 128876622 128876806 -113787547 - MIR SINE MIR -6 256 70 183 100 0 0 chr1 128877313 128877343 -113787010 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 871 313 94 13 chr1 128877347 128877830 -113786523 - L2 LINE L2 -16 3297 2776 297 0 0 0 chr1 128877923 128877956 -113786397 + (TG)n Simple_repeat Simple_repeat 1 33 0 270 0 0 0 chr1 128877955 128877985 -113786368 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 583 270 112 35 chr1 128877987 128878450 -113785903 + L1M4 LINE L1 2456 2954 -3192 444 274 41 31 chr1 128878456 128878774 -113785579 + L1M4 LINE L1 2991 3311 -2835 10376 122 60 5 chr1 128878812 128879739 -113784614 + L1PBa LINE L1 1 875 -5987 2112 79 96 68 chr1 128879739 128880093 -113784260 + THE1B LTR MaLR 1 364 0 12185 88 3 0 chr1 128880093 128881668 -113782685 + THE1B-int LTR MaLR 1 1580 0 2248 113 48 28 chr1 128881670 128882025 -113782328 + THE1B LTR MaLR 3 364 0 10376 122 60 5 chr1 128882025 128882143 -113782210 + L1PBa LINE L1 875 985 -5877 3708 62 8 8 chr1 128882143 128882625 -113781728 - L1PA5 LINE L1 0 6154 5673 10376 122 60 5 chr1 128882625 128884366 -113779987 + L1PBa LINE L1 985 3109 -3753 * 44354 47 2 3 chr1 128884361 128890508 -113773845 + L1PA4 LINE L1 1 6144 -11 23 0 0 0 chr1 128890508 128890531 -113773822 + AT_rich Low_complexity Low_complexity 1 23 0 211 128 0 64 chr1 128890827 128890874 -113773479 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 779 209 89 0 chr1 128891246 128891404 -113772949 - MER45A DNA AcHobo -6 172 1 312 247 0 0 chr1 128891767 128891844 -113772509 - L2 LINE L2 -1 3312 3236 704 262 101 10 chr1 128892091 128892451 -113771902 - L2 LINE L2 -254 3059 2678 748 304 25 4 chr1 128892817 128893060 -113771293 - MIR SINE MIR -10 252 5 371 250 47 19 chr1 128893225 128893402 -113770951 + L1ME3A LINE L1 5661 5833 -312 593 332 12 33 chr1 128893778 128894022 -113770331 - MIR SINE MIR -1 261 23 528 268 7 7 chr1 128894101 128894239 -113770114 - MIR SINE MIR -108 154 17 30 45 0 0 chr1 128894313 128894357 -113769996 + AT_rich Low_complexity Low_complexity 1 44 0 328 337 116 12 chr1 128894504 128894676 -113769677 + L2 LINE L2 3081 3270 -2 448 294 63 27 chr1 128896401 128896622 -113767731 - L3 LINE CR1 -109 1468 1240 7588 109 4 4 chr1 128897060 128898098 -113766255 + THE1-int LTR MaLR 258 1295 -285 330 200 0 15 chr1 128898199 128898264 -113766089 + THE1C LTR MaLR 312 375 0 12162 88 3 0 chr1 128898266 128899838 -113764515 + THE1B-int LTR MaLR 4 1580 0 2248 113 48 28 chr1 128899840 128900195 -113764158 + THE1B LTR MaLR 3 364 0 10376 122 60 5 chr1 128900195 128900313 -113764040 + L1PB1 LINE L1 959 1069 -5793 3708 62 8 8 chr1 128900313 128900795 -113763558 - L1PA5 LINE L1 0 6154 5673 10376 122 60 5 chr1 128900795 128902536 -113761817 + L1PB1 LINE L1 1069 3109 -3753 * 31811 42 1 2 chr1 128902531 128908691 -113755662 + L1PA4 LINE L1 1 6154 -1 12242 176 17 9 chr1 128908711 128912462 -113751891 + L1PB1 LINE L1 3092 6867 0 740 294 74 56 chr1 128912468 128913445 -113750908 + L1M4 LINE L1 3341 4334 -1812 705 296 97 36 chr1 128913601 128914044 -113750309 - L2 LINE L2 -1543 1771 1302 225 226 19 0 chr1 128914073 128914126 -113750227 + L2 LINE L2 3217 3270 -2 2154 170 13 31 chr1 128914268 128914726 -113749627 + MER65C LTR ERV1 3 452 -9 280 198 0 86 chr1 128914732 128914813 -113749540 + MIR SINE MIR 113 186 -76 1055 240 93 29 chr1 128914815 128915299 -113749054 + LTR33 LTR ERVL 7 521 0 3729 183 56 76 chr1 128917253 128919218 -113745135 - L1ME1 LINE L1 -57 6109 4189 1095 192 14 23 chr1 128919218 128919437 -113744916 - AluJo SINE Alu -2 310 94 1789 239 14 23 chr1 128919439 128919954 -113744399 - L1ME1 LINE L1 -1948 4198 3689 423 242 14 153 chr1 128920191 128920472 -113743881 + HAL1 LINE L1 840 1081 -1426 2004 141 47 26 chr1 128920516 128920898 -113743455 - MLT1B LTR MaLR 0 390 1 345 256 159 6 chr1 128921035 128921211 -113743142 + HAL1 LINE L1 2244 2446 -61 189 0 0 0 chr1 128921276 128921297 -113743056 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 219 235 73 15 chr1 128921501 128921569 -113742784 + L2 LINE L2 3230 3301 -12 25 0 0 0 chr1 128923187 128923212 -113741141 + AT_rich Low_complexity Low_complexity 1 25 0 12867 189 39 16 chr1 128923213 128924929 -113739424 - L1PB1 LINE L1 -2 6865 5191 198 0 0 0 chr1 128924929 128924951 -113739402 + (TATG)n Simple_repeat Simple_repeat 2 23 0 12867 189 39 16 chr1 128924951 128928740 -113735613 - L1PB1 LINE L1 -1676 5191 1093 4115 174 63 18 chr1 128928741 128929715 -113734638 - L1PB1 LINE L1 -5815 1048 31 476 321 78 13 chr1 128929775 128930236 -113734117 - L1M4 LINE L1 -1603 4543 4053 2937 107 19 5 chr1 128930240 128930661 -113733692 + MSTA LTR MaLR 1 427 -1 2113 125 0 3 chr1 128930714 128931073 -113733280 + AluSg SINE Alu 1 358 0 1833 317 111 15 chr1 128931073 128932047 -113732306 + L2 LINE L2 1879 2945 -369 306 311 136 0 chr1 128932046 128932149 -113732204 + L2 LINE L2 3156 3272 0 * 280 263 101 50 chr1 128932160 128932259 -113732094 + L2 LINE L2 2956 3059 -213 2051 117 30 7 chr1 128932600 128932900 -113731453 - AluSx SINE Alu -5 307 1 235 243 0 75 chr1 128932954 128932980 -113731373 + LTR67 LTR ERVL 459 557 0 304 222 0 25 chr1 128932980 128933061 -113731292 + MLT1K LTR MaLR 510 588 0 372 279 176 30 chr1 128933063 128933296 -113731057 + L2 LINE L2 3047 3313 0 526 308 44 33 chr1 128933316 128933683 -113730670 - L2 LINE L2 -814 2500 2130 328 293 121 0 chr1 128933969 128934126 -113730227 - MIR SINE MIR -31 231 56 724 324 47 61 chr1 128935194 128935638 -113728715 - L2 LINE L2 -8 3264 2827 1165 222 5 0 chr1 128935674 128935895 -113728458 - MER58A DNA MER1_type -2 222 1 587 198 0 0 chr1 128935924 128936030 -113728323 - MER81 DNA DNA -5 109 4 211 324 14 14 chr1 128936032 128936103 -113728250 + MER5A DNA MER1_type 50 120 -69 768 279 62 0 chr1 128937168 128937412 -113726941 + MIR SINE MIR 2 260 -2 384 326 93 63 chr1 128938346 128938929 -113725424 - L2 LINE L2 -193 3079 2475 314 320 187 19 chr1 128938969 128939444 -113724909 - L2 LINE L2 -1139 2175 1621 230 271 109 83 chr1 128940406 128940708 -113723645 - L2 LINE L2 0 3272 2963 269 241 57 50 chr1 128940917 128941058 -113723295 - MIR3 SINE MIR -34 174 33 198 0 0 0 chr1 128941529 128941551 -113722802 + (A)n Simple_repeat Simple_repeat 1 22 0 298 330 29 0 chr1 128941947 128942050 -113722303 - MIR SINE MIR -92 170 65 4855 104 3 10 chr1 128942744 128943468 -113720885 + Tigger1 DNA MER2_type 586 1304 -1114 4513 210 50 2 chr1 128943468 128944684 -113719669 - L1 LINE L1 -2672 3362 2089 2128 128 3 0 chr1 128944695 128944985 -113719368 + AluSx SINE Alu 1 291 -21 1747 210 0 0 chr1 128944985 128945280 -113719073 - AluJo SINE Alu -15 297 3 2594 183 2 2 chr1 128945350 128945820 -113718533 - L1PA16 LINE L1 -17 6149 5680 25797 66 6 1 chr1 128945843 128950234 -113714119 - L1PA6 LINE L1 -11 6143 1734 34808 92 11 8 chr1 128950335 128955959 -113708394 - L1PA16 LINE L1 -495 5659 11 3279 258 44 37 chr1 128955968 128958298 -113706055 - L1 LINE L1 -3960 2074 41 260 26 0 26 chr1 128958298 128958336 -113706017 + (TG)n Simple_repeat Simple_repeat 2 38 0 3279 258 44 37 chr1 128958336 128958374 -113705979 - L1 LINE L1 -5993 41 5 301 225 303 0 chr1 128958374 128958463 -113705890 - L2 LINE L2 -598 2716 2601 1006 259 75 3 chr1 128958464 128958757 -113705596 + MER69 DNA AcHobo 8 321 -905 314 344 8 8 chr1 128958890 128959015 -113705338 + L2 LINE L2 2619 2743 -571 3304 259 23 12 chr1 128959663 128960696 -113703657 + L1ME1 LINE L1 3220 4264 -1882 2279 98 15 6 chr1 128961039 128961367 -113702986 + L1PA10 LINE L1 5833 6163 -5 1794 202 47 32 chr1 128961448 128961742 -113702611 + L1ME1 LINE L1 4469 4757 -1389 1929 149 0 7 chr1 128961742 128962038 -113702315 + AluSx SINE Alu 1 294 -18 1794 202 47 32 chr1 128962038 128962375 -113701978 + L1ME1 LINE L1 4757 5165 -981 2720 198 64 16 chr1 128964781 128965546 -113698807 + L1ME1 LINE L1 5165 5962 -204 252 111 0 0 chr1 128965549 128965585 -113698768 + MER5A DNA MER1_type 41 76 -113 301 204 0 0 chr1 128966128 128966177 -113698176 - L2 LINE L2 -17 3255 3207 1553 210 77 24 chr1 128966527 128966903 -113697450 - MSTD LTR MaLR 0 396 1 200 364 91 0 chr1 128970313 128970379 -113693974 - L3 LINE CR1 -26 1551 1480 296 346 40 0 chr1 128970403 128970504 -113693849 + L2 LINE L2 3204 3308 -5 191 286 0 0 chr1 128970509 128970558 -113693795 - L3 LINE CR1 -127 1450 1402 3652 213 56 18 chr1 128970838 128971366 -113692987 - L1M4 LINE L1 -1505 4641 4135 1968 161 0 3 chr1 128971366 128971658 -113692695 - AluSx SINE Alu -21 291 1 3652 213 56 18 chr1 128971658 128972209 -113692144 - L1M4 LINE L1 -2011 4135 3521 407 262 39 13 chr1 128972220 128972447 -113691906 - L1MCc LINE L1 -4816 2125 1949 446 246 88 60 chr1 128972489 128972996 -113691357 - L1MCc LINE L1 -4915 1508 1173 682 344 168 24 chr1 128974416 128975186 -113689167 + L2 LINE L2 1844 2768 -546 2050 118 17 0 chr1 128975186 128975482 -113688871 + AluY SINE Alu 1 301 -10 682 344 168 24 chr1 128975482 128975628 -113688725 + L2 LINE L2 2768 2892 -422 1368 245 16 76 chr1 128975702 128976207 -113688146 + L2 LINE L2 2750 3216 -97 4724 162 28 21 chr1 128976312 128977156 -113687197 - L1MB3 LINE L1 -3 6180 5326 2790 136 106 2 chr1 128977156 128977627 -113686726 + MLT2B1 LTR ERVL 1 520 0 4724 162 28 21 chr1 128977627 128978054 -113686299 - L1MB3 LINE L1 -857 5326 4904 2122 140 138 5 chr1 128978697 128979075 -113685278 - MSTA LTR MaLR 0 428 1 468 262 60 68 chr1 128981953 128982201 -113682152 + Charlie8 DNA MER1_type 1 246 -2171 654 266 84 13 chr1 128982223 128982460 -113681893 + MIR SINE MIR 9 262 0 330 273 206 30 chr1 128982493 128982658 -113681695 - MIR SINE MIR -64 198 5 246 173 0 0 chr1 128982778 128982830 -113681523 + Charlie8 DNA MER1_type 2365 2416 -1 800 184 18 6 chr1 128982972 128983135 -113681218 + MER5A DNA MER1_type 25 189 0 2202 92 17 0 chr1 128983148 128983440 -113680913 - AluSp SINE Alu -16 297 1 241 167 83 0 chr1 128983884 128983944 -113680409 - MLT1K LTR MaLR -7 581 517 389 280 7 60 chr1 128984470 128984620 -113679733 - L2 LINE L2 -527 2787 2646 15457 107 16 27 chr1 128984647 128987030 -113677323 - Tigger1 DNA MER2_type 0 2418 62 2161 133 7 0 chr1 128987030 128987330 -113677023 + AluSx SINE Alu 1 302 -10 15457 107 16 27 chr1 128987330 128987392 -113676961 - Tigger1 DNA MER2_type -2356 62 1 2040 141 0 0 chr1 128989718 128990132 -113674221 + AluJb SINE Alu 1 414 0 2511 144 12 2 chr1 128990142 128990566 -113673787 + L1MB2 LINE L1 5739 6166 -5 245 203 29 0 chr1 128990576 128990645 -113673708 + L1MA10 LINE L1 6257 6327 -7 298 281 93 22 chr1 128991008 128991147 -113673206 - MIR SINE MIR -48 214 66 2106 180 64 0 chr1 128991154 128991560 -113672793 - MSTB1 LTR MaLR 0 432 1 333 279 0 78 chr1 128991599 128991753 -113672600 - LTR33 LTR ERVL -50 471 330 1686 171 4 0 chr1 128991832 128992096 -113672257 + AluSx SINE Alu 9 273 -39 288 0 0 0 chr1 128992097 128992129 -113672224 + (GA)n Simple_repeat Simple_repeat 1 32 0 273 98 0 0 chr1 128992718 128992759 -113671594 + (GA)n Simple_repeat Simple_repeat 2 42 0 2665 266 113 39 chr1 128993093 128995426 -113668927 + L1ME LINE L1 2706 5211 -935 395 314 65 0 chr1 128995428 128995613 -113668740 + L1ME LINE L1 5541 5737 -433 514 339 28 0 chr1 128995623 128995803 -113668550 + L3 LINE CR1 1279 1463 -114 2129 85 46 0 chr1 128995926 128996232 -113668121 + L1PA10 LINE L1 5849 6168 0 192 378 70 21 chr1 128996580 128996723 -113667630 + L3b LINE CR1 1415 1564 -19 313 306 92 69 chr1 128996968 128997520 -113666833 + L2 LINE L2 2283 2847 -467 2525 144 26 7 chr1 128997529 128997953 -113666400 + MSTB1 LTR MaLR 1 432 0 6557 187 117 11 chr1 128997953 128999445 -113664908 + MSTB1-int LTR MaLR 1 1651 0 2559 149 28 9 chr1 128999445 128999867 -113664486 + MSTB1 LTR MaLR 1 430 -2 310 237 0 79 chr1 129001748 129001862 -113662491 - MER112 DNA MER1_type -138 122 18 231 122 0 102 chr1 129002267 129002316 -113662037 - MIR SINE MIR -84 178 135 553 362 47 47 chr1 129002443 129002844 -113661509 - L2 LINE L2 -649 2665 2265 339 85 0 0 chr1 129002845 129002892 -113661461 + (ATG)n Simple_repeat Simple_repeat 2 48 0 998 276 29 0 chr1 129002897 129003140 -113661213 - MIR SINE MIR -11 251 2 585 298 59 70 chr1 129003181 129003274 -113661079 - L2 LINE L2 -1127 2187 2094 1680 180 3 27 chr1 129003274 129003569 -113660784 + AluJo SINE Alu 1 288 -24 585 298 59 70 chr1 129003569 129003918 -113660435 - L2 LINE L2 -1220 2094 1750 553 305 102 0 chr1 129004043 129004240 -113660113 + MIR SINE MIR 32 248 -14 416 306 82 82 chr1 129004666 129004970 -113659383 - L2 LINE L2 -55 3217 2914 403 253 247 0 chr1 129005735 129005885 -113658468 - MIR SINE MIR -74 188 2 352 245 44 31 chr1 129006417 129006586 -113657767 + MIR SINE MIR 38 204 -58 396 310 143 12 chr1 129007139 129007443 -113656910 - L3b LINE CR1 -95 1488 1103 205 383 62 0 chr1 129007545 129007707 -113656646 + L3 LINE CR1 645 816 -761 288 0 0 0 chr1 129008192 129008224 -113656129 + (TG)n Simple_repeat Simple_repeat 2 33 0 1708 162 0 62 chr1 129008228 129008536 -113655817 - AluJb SINE Alu -23 289 1 274 317 0 0 chr1 129009306 129009388 -113654965 - L1ME LINE L1 -446 5675 5594 1782 162 3 23 chr1 129010305 129010608 -113653745 - AluJo SINE Alu -15 297 1 288 307 184 0 chr1 129011531 129011645 -113652708 - L2 LINE L2 -2 3270 3136 258 262 161 101 chr1 129011793 129011961 -113652392 - MIR3 SINE MIR -15 193 16 381 270 108 0 chr1 129012095 129012206 -113652147 + MIR SINE MIR 21 143 -65 2146 141 24 11 chr1 129012614 129012989 -113651364 - L1MA8 LINE L1 -51 6240 5861 1103 281 98 26 chr1 129014169 129014275 -113650078 - L1ME3 LINE L1 -247 5915 5818 1365 151 26 9 chr1 129014275 129014507 -113649846 + MER46A DNA MER2_type 1 236 0 1103 281 98 26 chr1 129014507 129015283 -113649070 - L1ME3 LINE L1 -344 5818 4967 452 336 7 29 chr1 129016370 129016507 -113647846 + L2 LINE L2 3134 3267 -5 1093 173 158 70 chr1 129017120 129017518 -113646835 - Charlie1b DNA MER1_type 0 523 91 862 147 96 19 chr1 129017521 129017678 -113646675 - AluJb SINE Alu -15 297 129 4440 190 85 30 chr1 129017691 129018805 -113645548 + Charlie1a DNA MER1_type 41 1216 -239 629 179 0 8 chr1 129018828 129018945 -113645408 + Charlie1a DNA MER1_type 1336 1451 -4 218 324 29 0 chr1 129019156 129019224 -113645129 - MIR3 SINE MIR -12 196 127 357 182 57 11 chr1 129019471 129019559 -113644794 - MIR SINE MIR -10 252 161 184 366 50 50 chr1 129019961 129020062 -113644291 + MIR SINE MIR 21 121 -141 219 370 54 0 chr1 129022155 129022247 -113642106 + L2 LINE L2 3140 3236 -36 1618 185 95 47 chr1 129022939 129023432 -113640921 + Looper DNA T2_type 1 517 -1041 4168 136 28 67 chr1 129023467 129023526 -113640827 - L1MB7 LINE L1 -21 6163 6103 719 229 0 0 chr1 129023526 129023657 -113640696 - FLAM_A SINE Alu -1 132 2 4168 136 28 67 chr1 129023657 129023864 -113640489 - L1MB7 LINE L1 -81 6103 5890 2148 102 7 3 chr1 129023864 129024157 -113640196 + AluSc SINE Alu 1 294 -15 2273 110 0 0 chr1 129024157 129024467 -113639886 + AluY SINE Alu 1 310 -1 4168 136 28 67 chr1 129024467 129025051 -113639302 - L1MB7 LINE L1 -292 5892 5344 1767 223 52 33 chr1 129025051 129025535 -113638818 + MER74B LTR ERVL 56 548 -74 5357 218 56 23 chr1 129025618 129027100 -113637253 - L1MB7 LINE L1 -833 5351 3690 2077 160 70 9 chr1 129027105 129027361 -113636992 + Looper DNA T2_type 509 803 -755 2025 143 3 7 chr1 129027361 129027662 -113636691 - AluSx SINE Alu -7 305 6 2077 160 70 9 chr1 129027662 129027831 -113636522 + Looper DNA T2_type 803 960 -598 388 130 330 0 chr1 129027854 129027969 -113636384 + Looper DNA T2_type 1406 1558 0 885 340 138 27 chr1 129028171 129029090 -113635263 + L2 LINE L2 2244 3252 -20 325 288 158 0 chr1 129029243 129029382 -113634971 - MIR SINE MIR -61 201 41 378 290 191 50 chr1 129030051 129030313 -113634040 + L2 LINE L2 2988 3286 -27 410 330 89 80 chr1 129030604 129031537 -113632816 + L2 LINE L2 2098 3037 -235 22 35 0 0 chr1 129031629 129031658 -113632695 + AT_rich Low_complexity Low_complexity 1 29 0 212 238 0 0 chr1 129031745 129031787 -113632566 + L2 LINE L2 3182 3223 -49 1415 215 7 14 chr1 129031919 129032238 -113632115 + AluJo SINE Alu 1 317 0 271 259 196 36 chr1 129032578 129032690 -113631663 + L2 LINE L2 3143 3272 0 297 339 0 46 chr1 129033187 129033296 -113631057 - MIR3 SINE MIR -102 106 3 392 343 15 22 chr1 129034010 129034147 -113630206 - L3 LINE CR1 -13 1564 1429 475 309 304 21 chr1 129034405 129034888 -113629465 - L3 LINE CR1 -275 1302 683 442 176 0 0 chr1 129034894 129034968 -113629385 + MER57A LTR ERV1 302 375 -28 306 350 38 25 chr1 129034971 129035128 -113629225 - L3 LINE CR1 -882 695 537 969 184 12 12 chr1 129035149 129035317 -113629036 - FAM SINE Alu -6 169 2 412 259 78 63 chr1 129036164 129036369 -113627984 + HAL1 LINE L1 4 211 -2296 396 260 193 13 chr1 129036437 129036587 -113627766 + MIR SINE MIR 37 213 -49 2562 244 137 42 chr1 129036619 129037121 -113627232 + HAL1 LINE L1 262 715 -1792 1496 224 56 11 chr1 129037121 129037479 -113626874 + MLT1A2 LTR MaLR 1 374 0 2562 244 137 42 chr1 129037479 129038229 -113626124 + HAL1 LINE L1 715 1632 -875 444 303 26 13 chr1 129038290 129038445 -113625908 + HAL1 LINE L1 1761 1917 -590 415 277 38 47 chr1 129038652 129038887 -113625466 + L1MC4 LINE L1 7505 7737 -305 338 328 212 12 chr1 129039160 129039419 -113624934 - L3 LINE CR1 -153 1424 1114 * 537 318 151 41 chr1 129039416 129040130 -113624223 - L2 LINE L2 -68 3245 2431 2291 125 0 0 chr1 129040130 129040442 -113623911 + AluSx SINE Alu 1 312 0 537 318 151 41 chr1 129040442 129040481 -113623872 - L2 LINE L2 -882 2431 2398 599 281 131 15 chr1 129040509 129040769 -113623584 - L3 LINE CR1 -732 845 556 199 225 169 0 chr1 129040789 129040860 -113623493 - MIR SINE MIR -2 260 178 256 224 0 0 chr1 129040882 129040931 -113623422 - L2 LINE L2 -14 3299 3251 * 498 246 40 24 chr1 129040918 129041044 -113623309 - MIR SINE MIR -96 166 39 2142 162 64 24 chr1 129042345 129042471 -113621882 + L1MB8 LINE L1 5701 5821 -357 2419 80 10 0 chr1 129042471 129042771 -113621582 + AluY SINE Alu 1 303 -8 2142 162 64 24 chr1 129042771 129043094 -113621259 + L1MB8 LINE L1 5820 6168 -10 442 201 141 16 chr1 129043102 129043286 -113621067 + L1ME2 LINE L1 5816 6022 -142 626 195 39 13 chr1 129043292 129043446 -113620907 + L1MA10 LINE L1 6164 6321 -13 182 97 129 0 chr1 129044084 129044115 -113620238 - L2 LINE L2 -4 3268 3234 436 86 0 0 chr1 129044571 129044629 -113619724 + AluSp/q SINE Alu 235 292 -21 2381 297 100 23 chr1 129044630 129045838 -113618515 - L2 LINE L2 -19 3253 1935 5524 108 200 28 chr1 129045838 129046892 -113617461 - MER11B LTR ERVK 0 1236 1 254 294 25 56 chr1 129047007 129047167 -113617186 - L1ME3 LINE L1 -46 6116 5962 429 238 133 28 chr1 129047253 129047434 -113616919 - L1MC5 LINE L1 -430 7531 7332 2306 107 18 0 chr1 129047508 129047845 -113616508 - L1PA15 LINE L1 -1 6164 5822 1963 154 6 3 chr1 129048550 129048861 -113615492 + AluJb SINE Alu 1 312 0 331 327 188 0 chr1 129049019 129049184 -113615169 + MIR SINE MIR 1 196 -66 355 337 172 0 chr1 129049484 129049775 -113614578 + L2 LINE L2 1758 2098 -1216 762 186 234 34 chr1 129051452 129051802 -113612551 - LTR37A LTR ERV1 -6 420 1 648 287 11 6 chr1 129054147 129054328 -113610025 + MIR SINE MIR 2 183 -79 1416 150 117 26 chr1 129054329 129054602 -113609751 - AluJo SINE Alu -12 300 3 231 234 0 0 chr1 129054632 129054679 -113609674 - MIR SINE MIR -26 236 190 26 0 0 0 chr1 129054764 129054790 -113609563 + AT_rich Low_complexity Low_complexity 1 26 0 329 319 135 17 chr1 129054790 129055138 -113609215 - L2 LINE L2 -847 2467 2079 793 164 30 94 chr1 129055692 129055893 -113608460 + MER5A DNA MER1_type 2 189 0 416 252 45 9 chr1 129055894 129056005 -113608348 + L2 LINE L2 3190 3304 -9 1980 120 0 30 chr1 129056297 129056596 -113607757 + AluSx SINE Alu 6 295 -17 826 285 120 63 chr1 129058493 129060067 -113604286 + L1ME4a LINE L1 4457 6110 -11 345 200 0 0 chr1 129060679 129060759 -113603594 - MER116 DNA Mariner 0 80 1 1738 185 0 14 chr1 129063821 129064153 -113600200 + AluJo SINE Alu 1 328 0 411 71 86 29 chr1 129064788 129064858 -113599495 - MADE1 DNA Mariner 0 80 7 420 274 85 24 chr1 129064875 129065039 -113599314 - MIR SINE MIR -23 239 66 225 354 0 0 chr1 129065693 129065758 -113598595 - MIR SINE MIR -153 109 45 216 0 0 0 chr1 129066269 129066293 -113598060 + (T)n Simple_repeat Simple_repeat 1 24 0 2168 117 0 0 chr1 129066342 129066632 -113597721 - AluSx SINE Alu -22 290 1 581 273 134 16 chr1 129067202 129067396 -113596957 + L2 LINE L2 1141 1357 -1957 2571 265 170 16 chr1 129067486 129068073 -113596280 + L2 LINE L2 1805 2300 -1013 2159 114 30 0 chr1 129068073 129068372 -113595981 - AluSx SINE Alu -4 308 1 2571 265 170 16 chr1 129068372 129069071 -113595282 + L2 LINE L2 2300 3308 -5 268 132 171 53 chr1 129069738 129069814 -113594539 - L1ME4a LINE L1 -70 6051 5967 22 21 0 62 chr1 129069835 129069883 -113594470 + AT_rich Low_complexity Low_complexity 1 45 0 2610 50 0 0 chr1 129070039 129070341 -113594012 + AluY SINE Alu 1 302 -9 214 239 256 26 chr1 129070425 129070542 -113593811 + MIR SINE MIR 31 174 -88 330 280 159 11 chr1 129070967 129071150 -113593203 - MIR SINE MIR -43 219 13 515 307 36 27 chr1 129072246 129072471 -113591882 - MARNA DNA Mariner -44 542 316 375 279 69 0 chr1 129073801 129073937 -113590416 - MER5B DNA MER1_type 0 178 47 249 29 0 0 chr1 129074768 129074802 -113589551 + Alu SINE Alu 264 297 -5 205 286 191 32 chr1 129078458 129078584 -113585769 - MIR SINE MIR -114 148 3 485 258 168 10 chr1 129079074 129079384 -113584969 - L1ME4a LINE L1 -215 5906 5548 465 146 207 0 chr1 129079575 129079657 -113584696 + AluJ/FLAM SINE Alu 2 100 -212 361 273 177 40 chr1 129080041 129080290 -113584063 + L1M4 LINE L1 4743 5025 -1121 599 167 0 0 chr1 129080675 129080771 -113583582 + AluJ/FLAM SINE Alu 2 97 -215 1279 135 70 0 chr1 129080965 129081180 -113583173 - MER30 DNA MER1_type 0 230 1 183 156 0 0 chr1 129082774 129082806 -113581547 + GA-rich Low_complexity Low_complexity 3 34 0 182 327 18 0 chr1 129083289 129083344 -113581009 - MIR3 SINE MIR -11 197 142 423 56 0 0 chr1 129083489 129083543 -113580810 + (TG)n Simple_repeat Simple_repeat 2 55 0 1195 124 154 43 chr1 129083559 129083793 -113580560 - Tigger2 DNA MER2_type -1 2717 2458 743 96 19 0 chr1 129083846 129083950 -113580403 - Tigger2 DNA MER2_type -1974 744 639 * 2333 160 95 15 chr1 129083947 129084381 -113579972 - Tigger2 DNA MER2_type -2190 528 51 2049 124 0 7 chr1 129084381 129084687 -113579666 + AluSg SINE Alu 1 304 -6 2333 160 95 15 chr1 129084687 129084726 -113579627 - Tigger2 DNA MER2_type -2667 51 17 230 274 49 10 chr1 129084800 129084902 -113579451 - L1M4 LINE L1 -2616 3530 3425 21 0 0 0 chr1 129085289 129085310 -113579043 + AT_rich Low_complexity Low_complexity 1 21 0 545 113 12 0 chr1 129085860 129085940 -113578413 + AluSg/x SINE Alu 216 296 -16 529 215 33 15 chr1 129086537 129086680 -113577673 + MLT1F1 LTR MaLR 39 188 -379 2437 70 0 3 chr1 129086741 129087043 -113577310 - AluY SINE Alu -10 301 1 233 261 0 0 chr1 129087931 129087977 -113576376 + polypurine Low_complexity Low_complexity 4 49 0 325 222 60 43 chr1 129087993 129088110 -113576243 + L2 LINE L2 3099 3217 -96 359 244 99 30 chr1 129090151 129090282 -113574071 + MIR SINE MIR 31 170 -92 255 62 0 0 chr1 129090549 129090581 -113573772 + AluSg/x SINE Alu 172 203 -97 921 85 0 0 chr1 129090581 129090699 -113573654 + AluSc SINE Alu 185 302 -7 1422 69 32 0 chr1 129090749 129090937 -113573416 + MER30 DNA MER1_type 1 194 -36 293 269 87 19 chr1 129091941 129092045 -113572308 - MIR3 SINE MIR -13 195 85 209 221 59 15 chr1 129092267 129092335 -113572018 - MIR SINE MIR -6 256 186 180 296 49 37 chr1 129092321 129092402 -113571951 + L2 LINE L2 3186 3267 -5 * 2042 132 0 0 chr1 129092678 129092994 -113571359 + AluSg SINE Alu 1 316 0 195 167 0 0 chr1 129095076 129095118 -113569235 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 437 268 98 43 chr1 129095551 129095715 -113568638 - MIR SINE MIR -70 192 20 963 198 11 0 chr1 129095725 129095912 -113568441 - MER5A DNA MER1_type 0 189 1 566 267 158 0 chr1 129095929 129096075 -113568278 + MER5A DNA MER1_type 21 189 0 502 225 225 0 chr1 129096418 129096587 -113567766 + MER63A DNA MER1_type 2 208 -2 2730 158 89 9 chr1 129097077 129097604 -113566749 - L1PA16 LINE L1 0 6166 5598 359 285 0 88 chr1 129097671 129097808 -113566545 - MIR SINE MIR -50 212 88 210 118 0 0 chr1 129097967 129098001 -113566352 + (GA)n Simple_repeat Simple_repeat 1 34 0 2542 271 97 41 chr1 129098288 129100669 -113563684 + L1ME LINE L1 2646 5211 -935 409 324 65 0 chr1 129100671 129100856 -113563497 + L1ME LINE L1 5541 5737 -433 670 338 84 4 chr1 129100866 129101141 -113563212 + L3 LINE CR1 1279 1575 -2 359 281 180 54 chr1 129102584 129102918 -113561435 + L2 LINE L2 2897 3272 0 29 28 0 0 chr1 129103513 129103549 -113560804 + AT_rich Low_complexity Low_complexity 1 36 0 848 181 7 13 chr1 129104157 129104312 -113560041 - MER58B DNA MER1_type -11 330 177 2063 155 52 3 chr1 129105392 129105740 -113558613 + MLT1A1 LTR MaLR 1 365 0 600 333 0 18 chr1 129105773 129105995 -113558358 + MIR SINE MIR 3 220 -42 782 265 145 25 chr1 129106453 129106770 -113557583 - LTR18A LTR ERVL 0 357 3 33098 151 11 10 chr1 129106773 129112793 -113551560 - HERVL18 LTR ERVL 0 6047 1 932 251 157 38 chr1 129112799 129113118 -113551235 - LTR18A LTR ERVL 0 357 1 439 312 0 43 chr1 129113119 129113260 -113551093 + MER5A DNA MER1_type 55 189 0 312 237 116 87 chr1 129113275 129113448 -113550905 - MER5B DNA MER1_type 0 178 1 505 233 167 13 chr1 129113456 129113606 -113550747 + MER5B DNA MER1_type 1 173 -5 1085 237 0 0 chr1 129113619 129113817 -113550536 - MER58A DNA MER1_type 0 224 27 974 194 155 0 chr1 129113837 129114115 -113550238 - MER5C DNA MER1_type 0 324 4 306 316 148 24 chr1 129114418 129114627 -113549726 + MIR SINE MIR 28 262 0 551 270 118 28 chr1 129114638 129114870 -113549483 + MIR SINE MIR 8 262 0 685 139 9 0 chr1 129114884 129114999 -113549354 - L1MB7 LINE L1 -16 6168 6053 394 291 107 71 chr1 129115412 129115776 -113548577 + MLT1J1 LTR MaLR 66 442 -4 745 300 133 13 chr1 129117997 129118374 -113545979 + LTR16A LTR ERVL 23 444 -6 978 204 5 31 chr1 129118722 129118913 -113545440 - MER5A DNA MER1_type 0 189 4 254 304 0 13 chr1 129119748 129119827 -113544526 - MIR3 SINE MIR -7 201 124 427 308 55 16 chr1 129119896 129120078 -113544275 + L2 LINE L2 2476 2664 -650 1130 174 58 0 chr1 129120078 129120268 -113544085 - MLT1A1 LTR MaLR 0 365 165 810 177 7 35 chr1 129120270 129120411 -113543942 + AluJb SINE Alu 1 137 -175 958 141 61 6 chr1 129120411 129120574 -113543779 - MLT1A1 LTR MaLR -191 174 3 629 185 0 8 chr1 129120614 129120733 -113543620 + L1MB5 LINE L1 6053 6170 -4 1898 168 81 19 chr1 129120745 129121114 -113543239 + MSTA LTR MaLR 1 392 -36 2220 125 3 0 chr1 129121173 129121476 -113542877 - AluSx SINE Alu -8 304 1 248 128 26 0 chr1 129121477 129121516 -113542837 + MSTA LTR MaLR 387 426 0 3555 158 10 3 chr1 129121516 129122105 -113542248 + MSTA-int LTR MaLR 1 593 -1058 8027 26 11 0 chr1 129122108 129123217 -113541136 - L1PA4 LINE L1 -1 6154 5050 1372 167 102 105 chr1 129123217 129123570 -113540783 + MSTA LTR MaLR 77 428 0 525 277 201 28 chr1 129123619 129124085 -113540268 + L2 LINE L2 2737 3282 -31 341 64 21 0 chr1 129124085 129124132 -113540221 - MLT2B2 LTR ERVL 0 515 468 265 200 0 17 chr1 129124132 129124192 -113540161 + LTR66 LTR ERVL 381 439 -171 351 239 0 0 chr1 129124192 129124280 -113540073 + (CA)n Simple_repeat Simple_repeat 2 89 0 2065 140 55 21 chr1 129124288 129124617 -113539736 + MER2 DNA MER2_type 2 341 -3 481 197 79 3 chr1 129124617 129124823 -113539530 - MLT2D LTR ERVL -46 474 91 273 323 84 19 chr1 129124869 129125024 -113539329 - MIR SINE MIR -49 213 49 311 285 108 25 chr1 129125425 129125583 -113538770 - MIR SINE MIR -87 175 5 213 265 94 34 chr1 129125697 129125814 -113538539 + MIR SINE MIR 39 162 -100 198 343 88 36 chr1 129126036 129126173 -113538180 + L2 LINE L2 3127 3270 -2 627 95 24 0 chr1 129126632 129126716 -113537637 + AluY SINE Alu 212 297 -14 249 283 179 12 chr1 129126738 129126911 -113537442 + L1MC5 LINE L1 5324 5525 -2283 2113 135 0 0 chr1 129126928 129127224 -113537129 + AluSx SINE Alu 1 296 -16 910 279 51 29 chr1 129127293 129127644 -113536709 + L1MC5 LINE L1 5566 5924 -1884 26 0 0 0 chr1 129127658 129127684 -113536669 + AT_rich Low_complexity Low_complexity 1 26 0 382 238 16 41 chr1 129127697 129127819 -113536534 - L1MC4 LINE L1 -2 8040 7922 22 0 0 0 chr1 129127973 129127995 -113536358 + AT_rich Low_complexity Low_complexity 1 22 0 890 210 78 41 chr1 129128124 129128419 -113535934 + L1MC5 LINE L1 7083 7388 -573 193 229 129 43 chr1 129128645 129128715 -113535638 + MIR SINE MIR 18 93 -115 907 248 112 73 chr1 129128756 129129140 -113535213 + LTR33A LTR ERVL 63 468 -55 2625 108 16 24 chr1 129129140 129129518 -113534835 - THE1C LTR MaLR 0 375 1 907 248 112 73 chr1 129129518 129129572 -113534781 + LTR33A LTR ERVL 468 518 -5 926 248 107 26 chr1 129129812 129130506 -113533847 + L1ME LINE L1 4842 5600 -564 1998 194 24 80 chr1 129130519 129130547 -113533806 - L1ME2 LINE L1 -15 6149 6121 2351 93 0 26 chr1 129130547 129130860 -113533493 - AluY SINE Alu -6 305 1 1998 194 24 80 chr1 129130860 129131428 -113532925 - L1ME2 LINE L1 -43 6121 5587 625 218 5 78 chr1 129131435 129131628 -113532725 + L1ME LINE L1 5583 5761 -401 410 323 60 35 chr1 129131636 129131868 -113532485 + L2 LINE L2 978 1215 -2099 272 220 186 59 chr1 129131868 129131986 -113532367 + MER20B DNA MER1_type 3 135 -648 1186 264 99 41 chr1 129132039 129132524 -113531829 + L2 LINE L2 1225 1737 -1577 311 269 131 39 chr1 129132545 129132675 -113531678 + MIR3 SINE MIR 32 173 -35 12840 194 39 13 chr1 129133074 129136519 -113527834 + L1PA13 LINE L1 1 3597 -3200 2111 119 10 0 chr1 129136519 129136812 -113527541 + AluSq SINE Alu 1 296 -17 12840 194 39 13 chr1 129136812 129137673 -113526680 + L1PA13 LINE L1 3597 4434 -2363 203 343 81 30 chr1 129139413 129139512 -113524841 - L2 LINE L2 -27 3245 3142 288 291 117 10 chr1 129140568 129140671 -113523682 + L2 LINE L2 3188 3301 -12 2353 159 57 57 chr1 129140727 129141218 -113523135 + MER82 DNA MER2_type 2 492 -161 432 198 40 30 chr1 129142300 129142401 -113521952 - L2 LINE L2 0 3313 3212 525 268 31 0 chr1 129143651 129143778 -113520575 - L2 LINE L2 0 3313 3183 192 250 0 54 chr1 129143870 129143926 -113520427 + MIR SINE MIR 109 161 -101 25 0 0 0 chr1 129143963 129143988 -113520365 + AT_rich Low_complexity Low_complexity 1 25 0 187 350 31 43 chr1 129144017 129144180 -113520173 - MIR SINE MIR -94 168 8 1487 184 103 13 chr1 129144241 129144551 -113519802 + MER58B DNA MER1_type 1 338 -3 449 329 82 0 chr1 129144718 129144876 -113519477 - MIR SINE MIR -46 216 46 437 83 0 0 chr1 129145140 129145200 -113519153 + L1MA4 LINE L1 6236 6295 -5 273 210 0 0 chr1 129145222 129145284 -113519069 + LTR66 LTR ERVL 377 438 -172 486 286 48 40 chr1 129146012 129146252 -113518101 - MIR SINE MIR -6 256 16 253 32 0 0 chr1 129146300 129146331 -113518022 + L1MA4 LINE L1 6232 6262 -38 998 168 21 16 chr1 129146431 129146622 -113517731 + L1MB8 LINE L1 5987 6178 0 1892 156 7 13 chr1 129146827 129147134 -113517219 + AluJo SINE Alu 1 305 -7 777 162 8 0 chr1 129147209 129147326 -113517027 + FLAM_C SINE Alu 3 120 -23 189 0 0 0 chr1 129147326 129147347 -113517006 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 323 218 107 0 chr1 129148722 129148826 -113515527 - MIR SINE MIR -51 157 40 292 262 155 0 chr1 129148873 129148957 -113515396 - MER5A DNA MER1_type -84 105 9 15035 126 28 19 chr1 129149027 129150264 -113514089 + Tigger1 DNA MER2_type 3 1273 -1145 2147 126 0 0 chr1 129150264 129150550 -113513803 - AluSg SINE Alu -24 286 1 15035 126 28 19 chr1 129150550 129151693 -113512660 + Tigger1 DNA MER2_type 1273 2404 -14 1208 246 76 45 chr1 129151957 129152379 -113511974 + MLT1J1 LTR MaLR 5 439 -7 21 36 0 0 chr1 129152930 129152958 -113511395 + AT_rich Low_complexity Low_complexity 1 28 0 246 254 0 30 chr1 129153083 129153150 -113511203 + MIR SINE MIR 87 151 -57 23 0 0 0 chr1 129153258 129153281 -113511072 + AT_rich Low_complexity Low_complexity 1 23 0 2201 105 34 0 chr1 129153569 129153864 -113510489 - AluSx SINE Alu -7 305 1 287 259 52 0 chr1 129154825 129154883 -113509470 + MIR SINE MIR 19 79 -183 255 212 76 30 chr1 129154885 129154951 -113509402 + MIR SINE MIR 194 262 0 265 352 86 8 chr1 129154985 129155113 -113509240 - MIR SINE MIR -38 224 87 21 57 0 0 chr1 129155655 129155690 -113508663 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr1 129155777 129155818 -113508535 + AT_rich Low_complexity Low_complexity 1 41 0 405 233 170 38 chr1 129156092 129156251 -113508102 + MER5A DNA MER1_type 9 188 -1 225 167 48 0 chr1 129157077 129157119 -113507234 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1384 193 92 49 chr1 129157181 129157528 -113506825 + MLT1A1 LTR MaLR 1 362 -3 1939 142 3 43 chr1 129157680 129158004 -113506349 + AluSx SINE Alu 1 311 -1 1965 129 6 41 chr1 129158518 129158835 -113505518 + AluSx SINE Alu 5 310 -2 23 0 0 0 chr1 129159049 129159072 -113505281 + AT_rich Low_complexity Low_complexity 1 23 0 216 284 54 27 chr1 129160630 129160704 -113503649 - MIR SINE MIR -78 184 109 192 184 26 0 chr1 129161823 129161861 -113502492 + L2 LINE L2 3210 3248 -24 651 316 56 4 chr1 129161932 129162163 -113502190 - MIR SINE MIR 0 262 20 6654 75 20 2 chr1 129162939 129163960 -113500393 + L1PA10 LINE L1 5128 6168 0 195 378 70 21 chr1 129164308 129164451 -113499902 + L3b LINE CR1 1415 1564 -19 297 306 92 69 chr1 129164696 129165248 -113499105 + L2 LINE L2 2283 2847 -467 2518 144 26 7 chr1 129165257 129165681 -113498672 + MSTB1 LTR MaLR 1 432 0 7061 184 118 11 chr1 129165681 129167173 -113497180 + MSTB1-int LTR MaLR 1 1651 0 2590 142 28 12 chr1 129167173 129167596 -113496757 + MSTB1 LTR MaLR 1 430 -2 10400 149 31 20 chr1 129167884 129169700 -113494653 - L1P LINE L1 -4299 1847 13 3946 174 64 32 chr1 129170862 129171948 -113492405 - L1MB7 LINE L1 -22 6162 5042 182 156 0 89 chr1 129172509 129172554 -113491799 + MIR SINE MIR 216 256 -6 23 68 0 0 chr1 129173286 129173330 -113491023 + AT_rich Low_complexity Low_complexity 1 44 0 237 288 0 0 chr1 129173550 129173616 -113490737 + (TATG)n Simple_repeat Simple_repeat 1 66 0 300 284 11 2 chr1 129173635 129173786 -113490567 - L1ME LINE L1 -360 5804 5653 837 185 131 39 chr1 129173842 129174004 -113490349 + L1MA9 LINE L1 5991 6187 -125 387 0 0 0 chr1 129174004 129174047 -113490306 + (CA)n Simple_repeat Simple_repeat 2 44 0 837 185 131 39 chr1 129174047 129174144 -113490209 + L1MA9 LINE L1 6187 6274 -38 2541 130 37 37 chr1 129174528 129175013 -113489340 + L1MA8 LINE L1 5686 6170 -121 5581 127 14 1 chr1 129175014 129176474 -113487879 + L1PA13 LINE L1 4698 6144 -19 264 30 0 0 chr1 129176502 129176535 -113487818 + (CA)n Simple_repeat Simple_repeat 2 34 0 638 161 46 52 chr1 129176586 129176760 -113487593 + L1MA8 LINE L1 6116 6288 -3 491 244 109 0 chr1 129177266 129177385 -113486968 - MIR SINE MIR -67 195 64 352 163 70 35 chr1 129177415 129177501 -113486852 - LTR65 LTR ERV1 -241 428 340 385 326 97 0 chr1 129177733 129177908 -113486445 + LTR16A LTR ERVL 258 449 -1 600 296 61 5 chr1 129178205 129178401 -113485952 + MIR SINE MIR 4 210 -52 311 287 101 23 chr1 129178630 129178759 -113485594 - MIR SINE MIR -102 160 22 978 219 100 0 chr1 129178823 129179033 -113485320 + MIR SINE MIR 32 262 0 386 312 156 5 chr1 129179573 129179759 -113484594 + MIR SINE MIR 20 233 -29 2026 114 48 0 chr1 129179761 129180050 -113484303 + AluSq SINE Alu 1 303 -10 258 81 0 0 chr1 129180574 129180611 -113483742 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 200 339 0 0 chr1 129180613 129180669 -113483684 - L2 LINE L2 -8 3305 3250 343 320 75 70 chr1 129182668 129183253 -113481100 + L1MEd LINE L1 2 589 -5530 893 204 6 12 chr1 129183309 129183471 -113480882 + AluJ SINE Alu 1 161 -151 520 237 22 0 chr1 129183490 129183629 -113480724 + HAL1 LINE L1 1503 1644 -863 940 138 7 0 chr1 129183672 129183810 -113480543 + AluJ SINE Alu 162 300 -12 701 290 104 22 chr1 129183874 129184661 -113479692 + L1MEd LINE L1 722 1572 -4738 652 221 64 41 chr1 129184678 129184906 -113479447 + L1MEd LINE L1 2136 2376 -3753 1859 128 38 51 chr1 129184906 129185219 -113479134 + AluSx SINE Alu 1 309 -3 652 221 64 41 chr1 129185219 129185334 -113479019 + L1MEd LINE L1 2376 2487 -3642 1279 196 48 24 chr1 129185492 129185783 -113478570 + MER58B DNA MER1_type 2 299 -42 564 153 45 9 chr1 129185783 129185894 -113478459 + L1M4 LINE L1 92 206 -6336 2495 112 112 54 chr1 129185973 129186472 -113477881 + L1MC2 LINE L1 5809 6336 -8 591 262 71 0 chr1 129186877 129187055 -113477298 + MIR SINE MIR 16 205 -57 490 303 82 39 chr1 129187093 129187402 -113476951 + L1ME LINE L1 5267 5584 -537 289 258 55 99 chr1 129187538 129187720 -113476633 + MLT1L LTR MaLR 218 391 -224 21 0 0 0 chr1 129187974 129187995 -113476358 + AT_rich Low_complexity Low_complexity 1 21 0 445 208 52 0 chr1 129188320 129188416 -113475937 - LTR50 LTR ERVL -687 108 8 207 209 0 70 chr1 129188429 129188515 -113475838 + T-rich Low_complexity Low_complexity 2 81 0 353 331 44 24 chr1 129188724 129189017 -113475336 - HAL1 LINE L1 -985 1522 1224 1714 153 57 27 chr1 129190247 129190547 -113473806 - AluJo SINE Alu -1 311 3 335 295 87 13 chr1 129191261 129191410 -113472943 - MIR SINE MIR -6 256 97 23 33 0 0 chr1 129192108 129192138 -113472215 + AT_rich Low_complexity Low_complexity 1 30 0 223 310 62 18 chr1 129192248 129192361 -113471992 - MIR SINE MIR -68 140 23 677 233 94 22 chr1 129192684 129192907 -113471446 + MIR SINE MIR 13 251 -11 948 188 14 43 chr1 129193506 129193714 -113470639 + MLT1A1 LTR MaLR 9 210 -155 1009 272 62 0 chr1 129193725 129193982 -113470371 + AluJo SINE Alu 1 273 -39 213 39 0 0 chr1 129193992 129194018 -113470335 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 723 213 0 7 chr1 129194020 129194156 -113470197 + MLT1A1 LTR MaLR 220 354 -11 22 70 0 0 chr1 129194305 129194348 -113470005 + AT_rich Low_complexity Low_complexity 1 43 0 5130 51 0 26 chr1 129195164 129195828 -113468525 - L1PA8 LINE L1 0 6172 5526 225 0 0 0 chr1 129195935 129195960 -113468393 + (T)n Simple_repeat Simple_repeat 1 25 0 2074 126 13 7 chr1 129197340 129197650 -113466703 - AluSx SINE Alu 0 312 1 433 348 25 0 chr1 129197687 129197848 -113466505 + MER5B DNA MER1_type 6 170 -8 754 345 106 23 chr1 129197871 129198624 -113465729 + L2 LINE L2 2178 3030 -242 190 297 149 27 chr1 129198892 129198966 -113465387 - L2 LINE L2 -8 3264 3182 372 327 46 69 chr1 129199094 129199311 -113465042 + L2 LINE L2 2857 3068 -204 199 313 22 101 chr1 129199285 129199464 -113464889 - L2 LINE L2 -219 3053 2889 * 1954 168 16 0 chr1 129200668 129200971 -113463382 + AluJo SINE Alu 1 308 -4 219 69 0 0 chr1 129200971 129201000 -113463353 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 228 182 0 0 chr1 129201189 129201233 -113463120 + (TA)n Simple_repeat Simple_repeat 1 44 0 264 100 0 0 chr1 129201345 129201385 -113462968 + (CA)n Simple_repeat Simple_repeat 2 41 0 2549 153 25 2 chr1 129202105 129202551 -113461802 - L1PA15 LINE L1 0 6165 5710 6236 155 24 2 chr1 129202739 129203852 -113460501 + L1MC1 LINE L1 5186 6324 -9 1468 153 34 0 chr1 129204291 129204553 -113459800 + L1PA15 LINE L1 5879 6149 -16 223 175 25 0 chr1 129206009 129206049 -113458304 + MER5A DNA MER1_type 149 189 0 3839 194 4 1 chr1 129206275 129207047 -113457306 - L1PA15 LINE L1 -994 5152 4379 21768 66 5 1 chr1 129207055 129211361 -113452992 - L1PA6 LINE L1 0 6154 1834 529 215 33 15 chr1 129212030 129212173 -113452180 + MLT1F1 LTR MaLR 39 188 -379 2437 70 0 3 chr1 129212234 129212536 -113451817 - AluY SINE Alu -10 301 1 233 261 0 0 chr1 129213427 129213473 -113450880 + polypurine Low_complexity Low_complexity 4 49 0 325 222 60 43 chr1 129213489 129213606 -113450747 + L2 LINE L2 3099 3217 -96 359 244 99 30 chr1 129215647 129215778 -113448575 + MIR SINE MIR 31 170 -92 255 62 0 0 chr1 129216045 129216077 -113448276 + AluSp/q SINE Alu 174 205 -98 921 85 0 0 chr1 129216077 129216195 -113448158 + AluSc SINE Alu 185 302 -7 1422 69 32 0 chr1 129216245 129216433 -113447920 + MER30 DNA MER1_type 1 194 -36 293 269 87 19 chr1 129217437 129217541 -113446812 - MIR3 SINE MIR -13 195 85 209 221 59 15 chr1 129217763 129217831 -113446522 - MIR SINE MIR -6 256 186 180 296 49 37 chr1 129217817 129217898 -113446455 + L2 LINE L2 3186 3267 -5 * 2042 132 0 0 chr1 129218174 129218490 -113445863 + AluSg SINE Alu 1 316 0 195 167 0 0 chr1 129220569 129220611 -113443742 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 437 268 98 43 chr1 129221044 129221208 -113443145 - MIR SINE MIR -70 192 20 963 198 11 0 chr1 129221218 129221405 -113442948 - MER5A DNA MER1_type 0 189 1 566 267 158 0 chr1 129221422 129221568 -113442785 + MER5A DNA MER1_type 21 189 0 502 225 225 0 chr1 129221909 129222078 -113442275 + MER63A DNA MER1_type 2 208 -2 2730 158 89 9 chr1 129222568 129223095 -113441258 - L1PA16 LINE L1 0 6166 5598 359 285 0 88 chr1 129223162 129223299 -113441054 - MIR SINE MIR -50 212 88 278 315 39 31 chr1 129224339 129224466 -113439887 - MIR SINE MIR -122 140 13 283 258 0 30 chr1 129224549 129224615 -113439738 + MER5B DNA MER1_type 66 129 -49 802 253 82 25 chr1 129224774 129225019 -113439334 - MIR SINE MIR -2 260 2 248 245 35 49 chr1 129225307 129225450 -113438903 + MLT1H LTR MaLR 94 234 -315 240 207 69 0 chr1 129225554 129225612 -113438741 + MER63 DNA MER1_type 5 692 -144 24 24 0 24 chr1 129225874 129225898 -113438455 + AT_rich Low_complexity Low_complexity 1 25 -16 2282 86 0 36 chr1 129225898 129226202 -113438151 + AluSx SINE Alu 1 293 -19 24 24 0 24 chr1 129226202 129226219 -113438134 + AT_rich Low_complexity Low_complexity 25 41 0 449 272 99 25 chr1 129226264 129226426 -113437927 + MIR3 SINE MIR 30 203 -5 803 339 139 9 chr1 129226538 129227114 -113437239 + L2 LINE L2 405 1055 -2259 1248 284 209 43 chr1 129227114 129227737 -113436616 + L2 LINE L2 1416 1934 -1379 2428 83 0 3 chr1 129227737 129228039 -113436314 - AluSq SINE Alu -12 301 1 1248 284 209 43 chr1 129228039 129229032 -113435321 + L2 LINE L2 1934 3312 -1 2201 131 0 0 chr1 129229090 129229402 -113434951 - AluSx SINE Alu 0 312 1 348 338 0 26 chr1 129230764 129230918 -113433435 + MER117 DNA MER1_type 8 157 -40 2548 57 0 0 chr1 129231112 129231411 -113432942 - AluY SINE Alu -12 299 1 1459 288 34 28 chr1 129231469 129231871 -113432482 - L1MC4 LINE L1 -190 7852 7443 2259 98 50 31 chr1 129231871 129232228 -113432125 - THE1B LTR MaLR 0 364 1 1459 288 34 28 chr1 129232228 129232436 -113431917 - L1MC4 LINE L1 -599 7443 7238 732 255 46 95 chr1 129234192 129234560 -113429793 + MLT1J LTR MaLR 158 507 -4 260 279 0 15 chr1 129235268 129235336 -113429017 + MIR3 SINE MIR 112 178 -30 301 322 0 41 chr1 129235409 129235530 -113428823 - L2 LINE L2 -1 3312 3197 307 237 149 9 chr1 129236913 129237027 -113427326 - MIR3 SINE MIR -37 171 42 26 0 0 0 chr1 129237159 129237185 -113427168 + AT_rich Low_complexity Low_complexity 1 26 0 584 324 87 66 chr1 129238339 129238777 -113425576 + L2 LINE L2 2824 3270 -2 369 0 0 0 chr1 129239002 129239043 -113425310 + (CA)n Simple_repeat Simple_repeat 2 42 0 537 289 81 62 chr1 129240257 129240627 -113423726 + L3 LINE CR1 1101 1477 -100 219 69 0 0 chr1 129240873 129240902 -113423451 + (A)n Simple_repeat Simple_repeat 1 29 0 959 158 6 35 chr1 129240917 129241088 -113423265 - MER58B DNA MER1_type 0 341 176 386 312 64 20 chr1 129241922 129242124 -113422229 + L2 LINE L2 2443 2653 -661 305 284 25 0 chr1 129242249 129242330 -113422023 + L1MEd LINE L1 442 524 -5595 2392 116 59 0 chr1 129242356 129242711 -113421642 + MER51B LTR ERV1 2 377 0 276 272 123 15 chr1 129242721 129242916 -113421437 + L1MEd LINE L1 683 898 -5221 287 268 0 10 chr1 129242964 129243061 -113421292 + L1MEd LINE L1 1158 1253 -4866 3409 214 73 14 chr1 129243068 129243946 -113420407 - MER63C DNA MER1_type 0 930 1 2184 72 0 0 chr1 129243985 129244249 -113420104 + AluSg SINE Alu 35 298 -12 263 265 18 72 chr1 129244286 129244343 -113420010 + L1MEd LINE L1 1431 1490 -4820 2179 143 120 5 chr1 129244343 129244727 -113419626 + MSTA LTR MaLR 1 428 0 263 265 18 72 chr1 129244727 129244835 -113419518 + L1MEd LINE L1 1490 1587 -4723 2503 247 65 45 chr1 129244868 129245653 -113418700 + MER21B LTR ERV1 12 812 -51 1947 144 3 3 chr1 129245798 129246096 -113418257 + AluJo SINE Alu 1 298 -14 201 206 29 29 chr1 129246236 129246304 -113418049 + (TTAAA)n Simple_repeat Simple_repeat 5 72 0 844 148 198 41 chr1 129246347 129246590 -113417763 - MER58D DNA MER1_type -11 375 95 243 256 24 40 chr1 129246815 129246940 -113417413 - L1M4 LINE L1 -1744 4402 4280 892 163 0 7 chr1 129246962 129247115 -113417238 + L1MA8 LINE L1 1 152 -6878 1794 265 114 45 chr1 129247117 129248173 -113416180 + L1MA8 LINE L1 635 1762 -5268 3713 190 20 22 chr1 129248180 129248358 -113415995 + L1MA8 LINE L1 4121 4298 -2808 2306 112 0 0 chr1 129248358 129248663 -113415690 + AluSg SINE Alu 1 305 -5 3713 190 20 22 chr1 129248663 129249327 -113415026 + L1MA8 LINE L1 4298 4961 -2145 869 159 12 12 chr1 129249325 129249495 -113414858 + L1MA8 LINE L1 5509 5678 -1428 * 4671 127 4 14 chr1 129249495 129250213 -113414140 + MER50 LTR ERV1 1 711 -23 3201 155 19 30 chr1 129250214 129251317 -113413036 + L1MA8 LINE L1 5675 6766 -485 283 150 81 38 chr1 129251318 129251478 -113412875 + (TA)n Simple_repeat Simple_repeat 1 167 0 309 144 31 31 chr1 129251483 129251643 -113412710 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 201 179 51 51 chr1 129251648 129251726 -113412627 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 * 246 138 75 25 chr1 129251668 129251748 -113412605 + (TA)n Simple_repeat Simple_repeat 1 84 0 276 121 58 46 chr1 129251754 129251928 -113412425 + (TATAA)n Simple_repeat Simple_repeat 2 177 0 3074 134 10 2 chr1 129251931 129252432 -113411921 + L1MA8 LINE L1 6743 7247 -4 253 331 65 0 chr1 129252450 129252604 -113411749 + L1ME LINE L1 3634 3797 -2349 256 332 50 28 chr1 129253089 129253408 -113410945 + L1ME LINE L1 4723 5048 -1098 426 218 73 73 chr1 129253561 129253740 -113410613 - L1ME3A LINE L1 -76 6094 5916 554 343 48 39 chr1 129253885 129254197 -113410156 - L3 LINE CR1 -1 1576 1262 230 347 11 0 chr1 129255965 129256060 -113408293 + L1ME LINE L1 5483 5578 -543 26 0 0 0 chr1 129256280 129256306 -113408047 + AT_rich Low_complexity Low_complexity 1 26 0 612 274 29 6 chr1 129256530 129256705 -113407648 + L2 LINE L2 2296 2474 -840 1225 107 0 11 chr1 129256707 129256884 -113407469 - AluSg/x SINE Alu -2 310 136 31 26 0 0 chr1 129256922 129256960 -113407393 + AT_rich Low_complexity Low_complexity 1 38 0 1187 241 30 4 chr1 129256968 129257234 -113407119 + L2 LINE L2 2527 2799 -515 31 26 0 0 chr1 129257576 129257614 -113406739 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr1 129257780 129257802 -113406551 + AT_rich Low_complexity Low_complexity 1 22 0 1676 183 10 0 chr1 129257953 129258243 -113406110 - AluJo SINE Alu -13 299 7 328 275 30 46 chr1 129258313 129258444 -113405909 + MLT1J LTR MaLR 328 456 -55 352 231 176 55 chr1 129258495 129258751 -113405602 + L1M4 LINE L1 2276 2562 -3584 231 339 26 0 chr1 129258769 129258884 -113405469 + L1M4 LINE L1 3344 3461 -2685 275 224 0 0 chr1 129259030 129259097 -113405256 - L1 LINE L1 -1129 6436 6370 773 156 26 7 chr1 129259108 129259262 -113405091 - L1MA8 LINE L1 0 6291 6135 1131 255 77 29 chr1 129259274 129259710 -113404643 - L1 LINE L1 -3606 3959 3512 580 167 10 0 chr1 129259716 129259818 -113404535 - L1 LINE L1 -2266 3880 3778 306 191 105 71 chr1 129259823 129260033 -113404320 - L1 LINE L1 -4056 3509 3293 555 198 0 0 chr1 129260047 129260158 -113404195 - FLAM_A SINE Alu -1 141 31 912 270 29 9 chr1 129260196 129260541 -113403812 - L1 LINE L1 -4343 3222 2871 492 224 0 9 chr1 129260556 129260672 -113403681 - L1 LINE L1 -5047 2449 2335 2863 197 59 2 chr1 129260673 129260767 -113403586 + L1MB1 LINE L1 5378 5465 -724 186 43 0 0 chr1 129260767 129260790 -113403563 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2863 197 59 2 chr1 129260790 129261303 -113403050 + L1MB1 LINE L1 5465 6020 -169 893 221 33 12 chr1 129261303 129261547 -113402806 + L1MA10 LINE L1 6085 6333 -1 2696 19 3 10 chr1 129261828 129262141 -113402212 + AluYa5 SINE Alu 1 311 0 1615 308 104 32 chr1 129262225 129262768 -113401585 + L1M4 LINE L1 2342 2844 -3302 7923 35 0 0 chr1 129262768 129264534 -113399819 + L1PA4 LINE L1 4432 6155 0 1615 308 104 32 chr1 129264534 129265722 -113398631 + L1M4 LINE L1 2844 4198 -1948 284 350 82 0 chr1 129266236 129266333 -113398020 + L2 LINE L2 3145 3249 -23 217 143 16 32 chr1 129266407 129266470 -113397883 + (CTAA)n Simple_repeat Simple_repeat 3 64 0 1212 185 51 114 chr1 129267015 129267410 -113396943 + MLT1A2 LTR MaLR 1 370 -4 219 268 101 80 chr1 129267454 129267592 -113396761 - MIR3 SINE MIR -63 145 5 194 0 39 0 chr1 129267884 129267910 -113396443 + (TA)n Simple_repeat Simple_repeat 2 28 0 312 258 15 0 chr1 129268433 129268499 -113395854 - L2 LINE L2 -25 3288 3222 591 188 0 17 chr1 129268525 129268642 -113395711 - FLAM_A SINE Alu -8 134 20 1227 276 151 41 chr1 129268709 129268807 -113395546 - L2 LINE L2 -629 2685 2599 2201 105 0 7 chr1 129268807 129269102 -113395251 + AluSc SINE Alu 1 293 -16 1227 276 151 41 chr1 129269102 129269758 -113394595 - L2 LINE L2 -715 2599 1848 5076 268 66 45 chr1 129269900 129270324 -113394029 + HAL1 LINE L1 125 538 -1969 1130 165 50 94 chr1 129270324 129270663 -113393690 - MER33 DNA MER1_type 0 324 1 5076 268 66 45 chr1 129270663 129271119 -113393234 + HAL1 LINE L1 538 983 -1524 2045 113 18 0 chr1 129271119 129271402 -113392951 + AluSx SINE Alu 9 296 -16 5076 268 66 45 chr1 129271402 129272853 -113391500 + HAL1 LINE L1 983 2507 0 840 212 102 18 chr1 129272951 129273177 -113391176 + MIR SINE MIR 13 257 -5 483 271 237 30 chr1 129275386 129275850 -113388503 + L2 LINE L2 2748 3311 -2 482 217 106 61 chr1 129277630 129277810 -113386543 + MIR SINE MIR 10 197 -65 22 56 0 0 chr1 129278050 129278086 -113386267 + AT_rich Low_complexity Low_complexity 1 36 0 1683 261 63 66 chr1 129278197 129279631 -113384722 - L1M4 LINE L1 -1856 4290 2862 867 138 0 0 chr1 129279812 129279942 -113384411 - FLAM_C SINE Alu -7 136 7 191 279 126 27 chr1 129280230 129280341 -113384012 - L2 LINE L2 -516 2798 2677 288 0 0 0 chr1 129280802 129280834 -113383519 + (CA)n Simple_repeat Simple_repeat 2 33 0 1145 298 92 22 chr1 129282265 129282745 -113381608 - L2 LINE L2 0 3313 2797 1259 141 14 28 chr1 129282785 129282998 -113381355 - AluJb SINE Alu -102 210 1 703 308 180 8 chr1 129283001 129283252 -113381101 - L2 LINE L2 -534 2780 2574 2202 112 3 0 chr1 129283252 129283546 -113380807 + AluSg SINE Alu 5 299 -11 703 308 180 8 chr1 129283546 129283677 -113380676 - L2 LINE L2 -740 2574 2332 198 0 0 0 chr1 129284234 129284256 -113380097 + (CA)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chr1 129285904 129285932 -113378421 + AT_rich Low_complexity Low_complexity 1 28 0 452 287 144 17 chr1 129286075 129286256 -113378097 - MIR SINE MIR -10 252 49 231 324 36 28 chr1 129286295 129286434 -113377919 - MIR SINE MIR -63 145 33 1285 164 28 0 chr1 129286489 129286702 -113377651 - MER20 DNA MER1_type 0 219 1 225 286 61 41 chr1 129286724 129286822 -113377531 + L2 LINE L2 1751 1850 -1464 194 291 0 0 chr1 129286942 129286997 -113377356 - L2 LINE L2 -1 3271 3217 222 179 0 0 chr1 129287015 129287054 -113377299 + L2 LINE L2 3264 3302 -11 200 143 24 24 chr1 129287066 129287108 -113377245 + (ATAAG)n Simple_repeat Simple_repeat 3 44 0 330 317 103 60 chr1 129287230 129287599 -113376754 + L1PBa LINE L1 1605 1989 -1234 691 296 111 33 chr1 129287625 129288028 -113376325 - L2 LINE L2 -8 3305 2847 207 0 0 0 chr1 129288028 129288051 -113376302 + (TG)n Simple_repeat Simple_repeat 1 23 0 691 296 111 33 chr1 129288051 129288160 -113376193 - L2 LINE L2 -466 2847 2748 455 244 29 9 chr1 129288197 129288360 -113375993 + L1PBa LINE L1 2141 2266 -957 1669 162 132 9 chr1 129288472 129288806 -113375547 + THE1C LTR MaLR 1 375 0 562 172 10 0 chr1 129288809 129288908 -113375445 + MIR SINE MIR 142 241 -21 891 263 150 78 chr1 129288927 129289297 -113375056 + L1M4 LINE L1 2677 3019 -3127 1444 203 18 14 chr1 129289297 129289583 -113374770 + AluJo SINE Alu 1 287 -25 891 263 150 78 chr1 129289583 129289965 -113374388 + L1M4 LINE L1 3019 3483 -2663 333 260 71 47 chr1 129291457 129291584 -113372769 + L2 LINE L2 3168 3297 -16 186 43 0 0 chr1 129292930 129292953 -113371400 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 203 279 63 72 chr1 129295298 129295409 -113368944 - L3 LINE CR1 -66 1511 1402 2200 94 24 0 chr1 129295649 129295937 -113368416 + AluSx SINE Alu 1 295 -17 222 237 68 0 chr1 129296243 129296302 -113368051 + L2 LINE L2 3210 3272 0 206 333 157 0 chr1 129296709 129296817 -113367536 - MIR3 SINE MIR -1 207 83 40 0 0 0 chr1 129297186 129297226 -113367127 + AT_rich Low_complexity Low_complexity 1 40 0 365 313 171 6 chr1 129297319 129297495 -113366858 + MIR SINE MIR 46 250 -12 1604 179 7 27 chr1 129299829 129300125 -113364228 + AluJo SINE Alu 1 290 -22 183 80 0 0 chr1 129302051 129302076 -113362277 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2001 321 164 33 chr1 129302221 129302513 -113361840 - L2 LINE L2 -42 3271 3018 405 0 0 0 chr1 129302513 129302558 -113361795 + (TG)n Simple_repeat Simple_repeat 1 45 0 2001 321 164 33 chr1 129302558 129304586 -113359767 - L2 LINE L2 -295 3018 628 229 267 23 12 chr1 129304872 129304958 -113359395 + (TTA)n Simple_repeat Simple_repeat 3 89 0 417 284 68 14 chr1 129304965 129305113 -113359240 - MIR SINE MIR -61 201 46 201 94 0 0 chr1 129305427 129305459 -113358894 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 244 210 227 50 chr1 129305755 129305874 -113358479 - MIR SINE MIR -73 189 50 677 183 8 0 chr1 129306225 129306345 -113358008 - FLAM_A SINE Alu -12 121 1 857 98 0 0 chr1 129307832 129307944 -113356409 - AluSc SINE Alu -15 294 183 2003 119 0 31 chr1 129307950 129308273 -113356080 + AluSx SINE Alu 1 314 0 260 268 72 46 chr1 129308515 129308668 -113355685 + MER103 DNA DNA 9 165 -1 857 239 18 22 chr1 129309536 129309758 -113354595 + MIR SINE MIR 3 223 -39 441 0 0 0 chr1 129310147 129310196 -113354157 + (CA)n Simple_repeat Simple_repeat 2 50 0 281 273 112 31 chr1 129315832 129315993 -113348360 + L3b LINE CR1 1402 1575 -8 234 284 0 0 chr1 129317699 129317780 -113346573 + (TA)n Simple_repeat Simple_repeat 2 82 0 274 322 10 15 chr1 129318411 129318640 -113345713 - L1ME4a LINE L1 -169 5952 5724 722 158 15 71 chr1 129318786 129318982 -113345371 + MER3 DNA MER1_type 20 204 -5 2067 147 21 15 chr1 129319984 129320317 -113344036 + MER1B DNA MER1_type 3 337 0 321 47 0 0 chr1 129320741 129320784 -113343569 + (TG)n Simple_repeat Simple_repeat 2 44 0 215 378 11 0 chr1 129321021 129321111 -113343242 + MIR SINE MIR 53 143 -119 571 210 216 0 chr1 129321112 129321274 -113343079 - MER20 DNA MER1_type -17 202 6 231 351 15 30 chr1 129321282 129321413 -113342940 + MIR SINE MIR 133 261 -1 664 283 113 26 chr1 129323229 129323459 -113340894 - MIR SINE MIR -7 255 6 35 54 0 0 chr1 129323796 129323852 -113340501 + AT_rich Low_complexity Low_complexity 1 56 0 6942 134 26 25 chr1 129323852 129324809 -113339544 - L1MA5 LINE L1 -12 6288 5333 2471 62 0 26 chr1 129324809 129325118 -113339235 - AluY SINE Alu -10 301 1 6942 134 26 25 chr1 129325118 129325821 -113338532 - L1MA5 LINE L1 -967 5333 4632 2358 167 34 5 chr1 129325821 129326234 -113338119 - MSTB LTR MaLR 0 426 2 6942 134 26 25 chr1 129326234 129326447 -113337906 - L1MA5 LINE L1 -1668 4632 4421 2172 131 0 0 chr1 129326447 129326745 -113337608 + AluSc SINE Alu 1 298 -11 6942 134 26 25 chr1 129326745 129327116 -113337237 - L1MA5 LINE L1 -1879 4421 4041 632 207 13 4 chr1 129328077 129328297 -113336056 + CT-rich Low_complexity Low_complexity 1 221 0 370 342 21 42 chr1 129328685 129328875 -113335478 + MER5A DNA MER1_type 1 186 -3 334 162 40 0 chr1 129328918 129328992 -113335361 + MER81 DNA DNA 37 113 -1 186 250 0 0 chr1 129329258 129329294 -113335059 - L2 LINE L2 -21 3292 3257 846 307 134 9 chr1 129329660 129330084 -113334269 + L2 LINE L2 2832 3308 -5 351 254 84 110 chr1 129330387 129330686 -113333667 - L2 LINE L2 -3 3269 2979 2156 104 0 4 chr1 129331225 129331528 -113332825 - AluSc SINE Alu 0 302 1 230 360 12 49 chr1 129331828 129331992 -113332361 + MER5A DNA MER1_type 13 170 -19 496 255 68 0 chr1 129332474 129332635 -113331718 + L1ME LINE L1 5495 5666 -455 231 176 0 0 chr1 129332890 129332941 -113331412 + L1ME4a LINE L1 6060 6110 -11 323 301 66 55 chr1 129333065 129333321 -113331032 + L2 LINE L2 2718 2976 -338 191 235 0 20 chr1 129333501 129333552 -113330801 + L2 LINE L2 3223 3272 0 204 344 86 46 chr1 129333583 129333734 -113330619 + MER91A DNA MER1_type 18 174 -22 519 17 0 0 chr1 129333829 129333889 -113330464 + (TG)n Simple_repeat Simple_repeat 1 60 0 437 49 0 16 chr1 129334084 129334145 -113330208 + (TG)n Simple_repeat Simple_repeat 1 60 0 487 254 40 60 chr1 129334634 129334835 -113329518 + MIR SINE MIR 21 217 -45 375 23 0 0 chr1 129335500 129335544 -113328809 + (TG)n Simple_repeat Simple_repeat 2 45 0 183 91 114 68 chr1 129336456 129336500 -113327853 - L2 LINE L2 0 3313 3268 245 295 200 0 chr1 129336979 129337074 -113327279 + L2 LINE L2 3153 3266 -6 198 167 0 0 chr1 129337238 129337274 -113327079 + (CA)n Simple_repeat Simple_repeat 1 36 0 245 330 9 18 chr1 129337501 129337610 -113326743 - L2 LINE L2 0 3313 3206 4964 146 26 63 chr1 129337727 129338533 -113325820 + L1MA7 LINE L1 5223 6008 -283 2142 154 79 17 chr1 129338533 129338936 -113325417 + MSTC LTR MaLR 1 428 0 4964 146 26 63 chr1 129338936 129339210 -113325143 + L1MA7 LINE L1 6008 6291 0 515 265 254 49 chr1 129339257 129339710 -113324643 + L2 LINE L2 2429 2974 -340 340 245 68 80 chr1 129339826 129339989 -113324364 + L2 LINE L2 3152 3312 -1 255 242 63 0 chr1 129339998 129340093 -113324260 + MER113 DNA MER1_type? 6 106 -415 200 329 29 14 chr1 129340327 129340397 -113323956 + MIR SINE MIR 68 138 -70 29 0 0 0 chr1 129340482 129340511 -113323842 + AT_rich Low_complexity Low_complexity 1 29 0 2530 159 57 0 chr1 129340752 129341212 -113323141 + L1MB2 LINE L1 5686 6171 0 922 273 40 8 chr1 129341302 129341555 -113322798 - MIR SINE MIR 0 262 2 568 235 0 15 chr1 129342131 129342263 -113322090 + FLAM_C SINE Alu 2 131 -2 31 68 0 0 chr1 129344348 129344407 -113319946 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr1 129344430 129344454 -113319899 + AT_rich Low_complexity Low_complexity 1 24 0 206 234 21 0 chr1 129345776 129345823 -113318530 - L2 LINE L2 0 3313 3266 2393 135 70 53 chr1 129346900 129347403 -113316950 - LTR12 LTR ERV1 -104 610 1 241 196 143 0 chr1 129349681 129349737 -113314616 + L2 LINE L2 3209 3272 0 211 308 103 0 chr1 129350413 129350520 -113313833 + L2 LINE L2 3189 3306 -7 398 242 0 42 chr1 129350910 129351005 -113313348 + MIR3 SINE MIR 94 184 -24 437 278 188 0 chr1 129351924 129352068 -113312285 - MIR SINE MIR -6 256 86 2323 101 13 3 chr1 129352277 129352585 -113311768 + AluY SINE Alu 1 311 0 218 260 63 55 chr1 129354925 129355052 -113309301 + L2 LINE L2 3180 3307 -6 514 270 69 0 chr1 129355731 129355890 -113308463 - MER63A DNA MER1_type -38 172 3 742 237 107 23 chr1 129356354 129356569 -113307784 + MIR SINE MIR 2 234 -28 234 175 25 0 chr1 129357685 129357725 -113306628 + L2 LINE L2 3223 3263 -9 300 276 115 45 chr1 129358055 129358211 -113306142 + MIR SINE MIR 46 212 -50 2393 60 7 0 chr1 129360247 129360545 -113303808 - AluY SINE Alu -11 300 1 233 260 0 0 chr1 129360646 129360696 -113303657 - L2 LINE L2 -1399 1915 1866 200 327 106 71 chr1 129360975 129361088 -113303265 + MIR3 SINE MIR 8 124 -84 207 266 164 31 chr1 129361121 129361249 -113303104 - L2 LINE L2 -1 3312 3168 355 278 9 19 chr1 129361440 129361548 -113302805 - L1ME3A LINE L1 -256 5914 5808 220 360 166 7 chr1 129361904 129362043 -113302310 - L2 LINE L2 -92 3180 3020 280 341 129 45 chr1 129362509 129363042 -113301311 + L2 LINE L2 1803 2380 -934 182 239 163 54 chr1 129363503 129363595 -113300758 + MIR SINE MIR 86 187 -75 570 266 70 7 chr1 129363868 129364011 -113300342 - MER5A DNA MER1_type -18 171 20 664 212 18 24 chr1 129364019 129364189 -113300164 + LTR9 LTR ERV1 444 612 0 2481 57 7 0 chr1 129364352 129364653 -113299700 - AluY SINE Alu -8 303 1 25 51 0 0 chr1 129365494 129365533 -113298820 + AT_rich Low_complexity Low_complexity 1 39 0 345 302 20 69 chr1 129366386 129366440 -113297913 - L2 LINE L2 -757 2557 2502 2340 166 21 12 chr1 129366440 129366862 -113297491 + MSTA LTR MaLR 1 426 -2 345 302 20 69 chr1 129366862 129367009 -113297344 - L2 LINE L2 -812 2502 2366 222 348 21 28 chr1 129367626 129367767 -113296586 - L2 LINE L2 -460 2854 2715 21 36 0 0 chr1 129367829 129367857 -113296496 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 129368584 129368616 -113295737 + AT_rich Low_complexity Low_complexity 1 32 0 381 284 67 52 chr1 129369253 129369447 -113294906 - MIR SINE MIR -12 250 54 234 152 130 0 chr1 129371784 129371830 -113292523 + L1MB3 LINE L1 400 451 -7115 1208 159 10 5 chr1 129372393 129372588 -113291765 + AluJb SINE Alu 105 300 -12 240 245 11 47 chr1 129372591 129372684 -113291669 + L1MB3 LINE L1 1547 1862 -5705 3436 212 49 22 chr1 129372714 129373626 -113290727 + L1MB3 LINE L1 1960 2864 -4703 2153 110 3 0 chr1 129373732 129374036 -113290317 - AluSx SINE Alu 0 305 1 14061 186 40 24 chr1 129374037 129375831 -113288522 + L1MA4 LINE L1 2658 4421 -3298 1880 172 16 50 chr1 129375831 129376208 -113288145 - THE1B LTR MaLR 0 364 1 14061 186 40 24 chr1 129376208 129376869 -113287484 + L1MA4 LINE L1 4421 5070 -2649 294 27 0 0 chr1 129376869 129376906 -113287447 + MADE1 DNA Mariner 44 80 0 14061 186 40 24 chr1 129376906 129379449 -113284904 + L1MA4 LINE L1 5070 7719 0 302 231 58 29 chr1 129379456 129379560 -113284793 + L1MB3 LINE L1 2902 3008 -4559 2081 193 42 41 chr1 129379573 129380267 -113284086 + L1MB3 LINE L1 3114 3809 -3756 752 177 0 199 chr1 129380269 129380540 -113283813 + L1MB3 LINE L1 6806 7022 -688 686 176 34 0 chr1 129380541 129380660 -113283693 + FLAM_C SINE Alu 3 125 -18 1831 161 159 11 chr1 129380660 129381038 -113283315 + L1MB3 LINE L1 7018 7451 -151 218 403 13 19 chr1 129381415 129381569 -113282784 + L2 LINE L2 2937 3089 -183 22 35 0 0 chr1 129382902 129382931 -113281422 + AT_rich Low_complexity Low_complexity 1 29 0 382 295 54 42 chr1 129384203 129384444 -113279909 - L3 LINE CR1 -71 1506 1263 219 253 228 0 chr1 129384612 129384691 -113279662 - MIR SINE MIR 0 262 166 794 111 8 0 chr1 129385378 129385504 -113278849 - MER2 DNA MER2_type -136 209 83 257 231 0 0 chr1 129385504 129385556 -113278797 + LTR30 LTR ERV1 1 52 -670 1709 119 20 204 chr1 129385567 129385967 -113278386 + LTR12 LTR ERV1 68 355 -359 2052 103 6 45 chr1 129385967 129386278 -113278075 - AluY SINE Alu -10 301 3 1709 119 20 204 chr1 129386278 129386388 -113277965 + LTR12 LTR ERV1 355 484 -230 357 221 12 70 chr1 129386389 129386475 -113277878 - MER2 DNA MER2_type -264 81 1 408 205 90 74 chr1 129387299 129387421 -113276932 + MLT1J2 LTR MaLR 1 124 -326 243 250 68 11 chr1 129387580 129387668 -113276685 + MLT1J2 LTR MaLR 353 445 -5 490 276 256 21 chr1 129390599 129391033 -113273320 - L2 LINE L2 -878 2436 1901 5799 165 45 17 chr1 129391180 129392846 -113271507 + L1MA4 LINE L1 4521 6300 0 2188 79 20 3 chr1 129392934 129393226 -113271127 - AluY SINE Alu -14 297 1 267 54 0 0 chr1 129393888 129393925 -113270428 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 613 283 23 46 chr1 129394415 129394634 -113269719 + MIR SINE MIR 47 260 -2 4802 183 112 26 chr1 129394634 129395817 -113268536 - L1MC3 LINE L1 -1 7784 6500 485 286 42 0 chr1 129395848 129395967 -113268386 - L2 LINE L2 0 3272 3149 712 265 82 16 chr1 129396563 129397053 -113267300 - L1MEd LINE L1 -2828 3301 2780 502 235 116 99 chr1 129397084 129397446 -113266907 - L1MEd LINE L1 -5126 993 626 252 254 88 109 chr1 129397496 129397689 -113266664 - L1MEd LINE L1 -5612 507 319 410 309 46 11 chr1 129397791 129397966 -113266387 - L1MEd LINE L1 -5935 184 4 369 187 0 0 chr1 129399832 129399907 -113264446 + CT-rich Low_complexity Low_complexity 1 75 0 266 0 29 0 chr1 129400496 129400530 -113263823 + (TG)n Simple_repeat Simple_repeat 1 35 0 2105 163 53 0 chr1 129400768 129401129 -113263224 - MSTA LTR MaLR 0 428 49 1783 111 114 14 chr1 129401266 129401546 -113262807 - AluSx SINE Alu -3 309 2 267 159 0 0 chr1 129401547 129401591 -113262762 - MSTA LTR MaLR -374 54 11 30615 28 3 1 chr1 129401944 129406413 -113257940 + L1PA2 LINE L1 1675 6147 -8 1032 118 59 0 chr1 129406413 129406566 -113257787 + AluSg/x SINE Alu 121 282 -30 236 167 14 0 chr1 129406586 129406658 -113257695 + (TA)n Simple_repeat Simple_repeat 2 74 0 297 315 55 79 chr1 129407323 129407489 -113256864 + L2 LINE L2 2148 2307 -1007 372 22 0 0 chr1 129407489 129407534 -113256819 + (CA)n Simple_repeat Simple_repeat 2 46 0 297 315 55 79 chr1 129407534 129407621 -113256732 + L2 LINE L2 2307 2395 -919 256 300 25 105 chr1 129407646 129407846 -113256507 - L2 LINE L2 -79 3193 3010 650 265 29 34 chr1 129408164 129408368 -113255985 - LTR52 LTR ERVL -218 203 1 1353 222 0 8 chr1 129408368 129408634 -113255719 - LTR52-int LTR ERVL 0 3556 3293 2590 155 12 2 chr1 129408803 129409227 -113255126 - MSTA LTR MaLR 0 417 1 408 304 45 0 chr1 129410725 129410926 -113253427 + L1ME4a LINE L1 5737 5946 -175 545 292 116 4 chr1 129411587 129411803 -113252550 - MIR SINE MIR -14 248 2 290 346 74 52 chr1 129412378 129412687 -113251666 - L2 LINE L2 -40 3232 2917 2834 92 22 22 chr1 129413077 129413558 -113250795 - MLT2A1 LTR ERVL 0 453 1 410 292 13 94 chr1 129413982 129414215 -113250138 - MIR SINE MIR 0 262 49 197 289 149 25 chr1 129414288 129414409 -113249944 + L2 LINE L2 3164 3299 -14 347 147 29 0 chr1 129415193 129415261 -113249092 - MER116 DNA Mariner -5 75 6 258 208 111 14 chr1 129415266 129415338 -113249015 - MIR SINE MIR -183 79 1 228 67 0 0 chr1 129415684 129415714 -113248639 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 305 283 158 40 chr1 129416349 129416501 -113247852 + L3 LINE CR1 1407 1576 -1 324 320 76 15 chr1 129416625 129416822 -113247531 - L1ME4a LINE L1 -157 5964 5756 2058 150 0 0 chr1 129416823 129417123 -113247230 - AluJo SINE Alu -12 300 1 369 204 39 10 chr1 129417232 129417335 -113247018 - L1ME4a LINE L1 -490 5631 5526 326 317 75 43 chr1 129417484 129417645 -113246708 + MIR SINE MIR 8 173 -89 213 94 0 0 chr1 129418296 129418328 -113246025 + (TC)n Simple_repeat Simple_repeat 2 33 0 396 330 129 5 chr1 129419201 129419410 -113244943 + MIR SINE MIR 23 257 -5 292 224 224 48 chr1 129420157 129420282 -113244071 - MER5A DNA MER1_type -42 147 1 184 352 76 0 chr1 129420282 129420384 -113243969 + L2 LINE L2 3189 3298 -15 369 268 33 13 chr1 129420842 129420995 -113243358 + L1ME4a LINE L1 5564 5719 -402 315 300 117 41 chr1 129421009 129421299 -113243054 + L1ME4a LINE L1 5743 6054 -67 395 335 7 17 chr1 129422300 129422448 -113241905 - MIR3 SINE MIR -48 160 15 363 288 76 27 chr1 129423716 129423884 -113240469 - MIR SINE MIR -65 143 12 221 283 0 0 chr1 129425364 129425424 -113238929 + (TG)n Simple_repeat Simple_repeat 1 60 0 205 200 0 0 chr1 129425472 129425512 -113238841 + (TA)n Simple_repeat Simple_repeat 2 41 0 268 256 218 13 chr1 129425592 129425748 -113238605 - L1MC4 LINE L1 -166 7876 7689 1684 152 105 0 chr1 129425868 129426183 -113238170 - MER47A DNA MER2_type -15 351 4 387 291 57 46 chr1 129426498 129427257 -113237096 - L1MEd LINE L1 -4548 1581 821 244 315 14 70 chr1 129428948 129429091 -113235262 - MIR SINE MIR -77 185 51 2387 97 7 0 chr1 129429166 129429475 -113234878 - AluY SINE Alu 0 311 1 7901 40 2 2 chr1 129429528 129431310 -113233043 + L1PA5 LINE L1 4349 6131 -23 237 258 68 0 chr1 129431447 129431579 -113232774 + L1ME4a LINE L1 5978 6118 -3 1017 188 28 0 chr1 129432032 129432208 -113232145 + FRAM SINE Alu 1 174 -2 249 297 123 43 chr1 129432980 129433118 -113231235 + MIR SINE MIR 78 226 -36 372 344 8 24 chr1 129433177 129433302 -113231051 + MIR SINE MIR 21 143 -65 2123 102 3 23 chr1 129433383 129433687 -113230666 + AluSx SINE Alu 1 298 -14 308 213 27 0 chr1 129435916 129435991 -113228362 + MLT1J LTR MaLR 108 184 -327 569 276 75 35 chr1 129435991 129436219 -113228134 + MLT1I LTR MaLR 170 406 -3 847 237 19 24 chr1 129436334 129436541 -113227812 - MER63A DNA MER1_type -2 208 3 261 100 0 0 chr1 129436541 129436591 -113227762 + L1MA7 LINE L1 6242 6291 0 21 0 0 0 chr1 129436591 129436612 -113227741 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 129436898 129436921 -113227432 + AT_rich Low_complexity Low_complexity 1 23 0 4266 140 23 53 chr1 129436921 129437788 -113226565 - L1MA3 LINE L1 -5 6300 5460 960 219 66 58 chr1 129437806 129438048 -113226305 + AluJo SINE Alu 46 289 -23 4974 162 45 106 chr1 129438048 129439218 -113225135 - L1MA3 LINE L1 -746 5400 4437 2424 88 0 0 chr1 129439218 129439523 -113224830 + AluY SINE Alu 1 305 -6 4974 162 45 106 chr1 129439523 129439945 -113224408 - L1MA3 LINE L1 -1709 4437 3991 346 276 20 0 chr1 129440899 129440997 -113223356 + MIR3 SINE MIR 103 202 -6 241 294 126 126 chr1 129441048 129441262 -113223091 - L2 LINE L2 -4 3268 3055 281 222 0 0 chr1 129441307 129441352 -113223001 - MER96 DNA MER1_type? -1 174 127 2176 40 18 32 chr1 129441352 129441630 -113222723 - AluY SINE Alu -14 297 24 281 222 0 0 chr1 129441630 129441647 -113222706 - MER96 DNA MER1_type? -47 128 112 510 338 102 38 chr1 129441807 129442473 -113221880 - L2 LINE L2 -454 2860 2152 414 0 0 0 chr1 129443366 129443412 -113220941 + (TG)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr1 129443411 129443432 -113220921 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 614 255 172 10 chr1 129444034 129444243 -113220110 + MIR SINE MIR 16 249 -13 21 0 0 0 chr1 129446491 129446512 -113217841 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr1 129446957 129447000 -113217353 + (CA)n Simple_repeat Simple_repeat 1 43 0 340 272 57 19 chr1 129447008 129447166 -113217187 + MER112 DNA MER1_type 97 260 0 180 273 239 0 chr1 129448899 129448987 -113215366 - L3 LINE CR1 -1457 120 12 1761 177 0 14 chr1 129449827 129450115 -113214238 + AluJb SINE Alu 2 285 -27 330 132 0 0 chr1 129450535 129450588 -113213765 + (CA)n Simple_repeat Simple_repeat 2 54 0 645 125 0 33 chr1 129450886 129451006 -113213347 + L1PB1 LINE L1 3 118 -6745 1080 156 6 20 chr1 129451006 129451232 -113213121 + LTR12 LTR ERV1 36 1983 -455 313 230 0 0 chr1 129451333 129451407 -113212946 + LTR30 LTR ERV1 541 614 -108 771 164 57 0 chr1 129451407 129451547 -113212806 + LTR12 LTR ERV1 349 496 -218 28808 114 9 15 chr1 129451555 129456863 -113207490 + HERV9 LTR ERV1 54 5410 -2989 9435 109 5 17 chr1 129456842 129458325 -113206028 + HERV9 LTR ERV1 6934 8399 0 * 251 231 0 0 chr1 129458325 129458377 -113205976 + LTR30 LTR ERV1 1 52 -670 844 148 34 25 chr1 129458377 129458576 -113205777 + LTR12 LTR ERV1 55 207 -507 307 247 0 0 chr1 129458685 129458766 -113205587 + LTR30 LTR ERV1 544 624 -98 799 126 25 0 chr1 129458766 129458885 -113205468 + LTR12 LTR ERV1 359 480 -234 10280 205 59 3 chr1 129458886 129461240 -113203113 + L1PB1 LINE L1 718 2940 -3922 243 0 0 0 chr1 129461240 129461267 -113203086 + (CAA)n Simple_repeat Simple_repeat 1 27 0 10280 205 59 3 chr1 129461267 129463426 -113200927 + L1PB1 LINE L1 2940 5605 -1257 1511 177 83 14 chr1 129463426 129463777 -113200576 + THE1C LTR MaLR 1 375 0 10114 122 25 28 chr1 129463777 129465363 -113198990 + THE1C-int LTR MaLR 1 1580 0 2154 132 67 17 chr1 129465363 129465720 -113198633 + THE1C LTR MaLR 1 375 0 4709 139 53 60 chr1 129465720 129466557 -113197796 + L1PB1 LINE L1 5601 6467 -400 238 135 0 19 chr1 129466557 129466609 -113197744 - LTR66 LTR ERVL -166 444 394 4709 139 53 60 chr1 129466609 129467004 -113197349 + L1PB1 LINE L1 6467 6864 -3 29 0 0 0 chr1 129467005 129467034 -113197319 + AT_rich Low_complexity Low_complexity 1 29 0 1814 299 87 71 chr1 129467492 129468547 -113195806 + L2 LINE L2 315 1386 -1928 1207 157 0 5 chr1 129468606 129468797 -113195556 + MLT1B LTR MaLR 32 221 -169 212 0 36 0 chr1 129469139 129469167 -113195186 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1024 173 12 0 chr1 129469411 129469584 -113194769 + MLT1B LTR MaLR 216 390 0 2621 306 104 15 chr1 129469585 129470977 -113193376 + L2 LINE L2 1592 3104 -209 2058 149 0 0 chr1 129471819 129472121 -113192232 - AluJo SINE Alu -10 302 1 202 362 0 0 chr1 129473372 129473441 -113190912 - L2 LINE L2 -1 3312 3244 231 301 4 0 chr1 129474006 129474084 -113190269 + MIR SINE MIR 59 136 -93 1608 161 33 20 chr1 129474604 129474908 -113189445 - AluJo SINE Alu -4 308 1 1178 128 6 0 chr1 129476295 129476467 -113187886 + L1MA2 LINE L1 6132 6304 0 210 219 0 0 chr1 129476928 129476969 -113187384 - MIR SINE MIR -13 249 209 204 248 192 24 chr1 129476974 129477099 -113187254 - L2 LINE L2 -93 3220 3075 309 320 0 8 chr1 129477116 129477238 -113187115 - MER5A DNA MER1_type -68 121 1 36 0 0 0 chr1 129477955 129477991 -113186362 + AT_rich Low_complexity Low_complexity 1 36 0 484 310 108 26 chr1 129478322 129478748 -113185605 + L3 LINE CR1 906 1366 -211 * 848 269 46 9 chr1 129478740 129478959 -113185394 + MIR SINE MIR 15 241 -21 329 266 168 14 chr1 129479475 129479618 -113184735 - L2 LINE L2 -1 3271 3107 217 256 73 61 chr1 129480039 129480121 -113184232 + MIR3 SINE MIR 110 192 -16 182 308 51 51 chr1 129480449 129480605 -113183748 - L3 LINE CR1 -727 850 695 234 222 105 56 chr1 129480833 129480965 -113183388 - MIR SINE MIR -39 169 27 236 309 52 44 chr1 129482427 129482563 -113181790 - L3 LINE CR1 -4 1573 1437 23 0 0 0 chr1 129482567 129482590 -113181763 + AT_rich Low_complexity Low_complexity 1 23 0 2010 170 33 33 chr1 129484448 129484813 -113179540 + MLT1A1 LTR MaLR 1 365 0 396 296 116 17 chr1 129484934 129485106 -113179247 - MER5A DNA MER1_type 0 189 1 943 251 74 19 chr1 129485229 129485540 -113178813 + L2 LINE L2 2553 2880 -434 597 159 0 0 chr1 129488315 129488403 -113175950 - 5S rRNA rRNA -33 88 1 393 335 135 15 chr1 129488445 129488711 -113175642 + L2 LINE L2 2811 3108 -164 309 255 19 57 chr1 129488718 129488824 -113175529 - L2 LINE L2 0 3313 3212 3049 206 28 3 chr1 129488869 129489520 -113174833 + L1PA15 LINE L1 4470 5136 -1010 3151 163 31 4 chr1 129489520 129490041 -113174312 + L1PA15 LINE L1 5624 6159 -6 714 103 9 0 chr1 129490173 129490280 -113174073 - L1P4 LINE L1 -654 5514 5407 2095 115 7 3 chr1 129490955 129491250 -113173103 - AluSg SINE Alu -14 296 1 180 0 0 0 chr1 129491807 129491827 -113172526 + (T)n Simple_repeat Simple_repeat 1 20 0 731 266 126 45 chr1 129492259 129492657 -113171696 - Charlie7 DNA MER1_type -2051 561 132 24 32 0 0 chr1 129492659 129492690 -113171663 + AT_rich Low_complexity Low_complexity 1 31 0 696 297 10 5 chr1 129492810 129493012 -113171341 + MIR SINE MIR 41 243 -19 209 227 0 0 chr1 129493021 129493065 -113171288 + (TTA)n Simple_repeat Simple_repeat 2 45 0 197 318 47 28 chr1 129493304 129493411 -113170942 + MIR SINE MIR 118 226 -36 199 271 86 14 chr1 129494004 129494074 -113170279 + MIR SINE MIR 8 82 -180 190 256 0 0 chr1 129495399 129495438 -113168915 + L2 LINE L2 3222 3260 -12 285 369 50 17 chr1 129496039 129496218 -113168135 - MLT1L LTR MaLR -64 551 367 198 0 0 0 chr1 129496281 129496303 -113168050 + (T)n Simple_repeat Simple_repeat 1 22 0 1541 155 8 4 chr1 129496309 129496548 -113167805 - AluSx SINE Alu -70 242 3 510 274 76 6 chr1 129496693 129496867 -113167486 - MLT1L LTR MaLR -317 271 86 914 212 33 33 chr1 129497117 129497358 -113166995 + HsTC2 DNA Tc2 434 674 -1224 691 212 188 8 chr1 129497371 129497626 -113166727 + HsTC2 DNA Tc2 1516 1816 -82 619 262 7 0 chr1 129500339 129500488 -113163865 - L1MA10 LINE L1 -10 6324 6175 2042 143 30 6 chr1 129500502 129500838 -113163515 + MER47A DNA MER2_type 1 344 -22 405 240 64 32 chr1 129500939 129501064 -113163289 + MIR SINE MIR 59 187 -75 2403 185 53 32 chr1 129501220 129501713 -113162640 - MLT1D LTR MaLR 0 505 3 1744 164 202 16 chr1 129502667 129503038 -113161315 + MLT2B1 LTR ERVL 3 442 -78 239 125 0 89 chr1 129503004 129503060 -113161293 + MSTC LTR MaLR 327 377 -51 * 542 84 28 0 chr1 129504100 129504171 -113160182 - AluSp SINE Alu -178 135 63 510 259 114 76 chr1 129504440 129504730 -113159623 - L2 LINE L2 -56 3257 2957 985 113 0 35 chr1 129504932 129505074 -113159279 + AluSq/x SINE Alu 1 137 -175 11664 54 83 5 chr1 129505077 129506608 -113157745 + L1PA2 LINE L1 6 1656 -4490 15466 40 5 0 chr1 129606610 129609260 -113055093 + L1PA2 LINE L1 3497 6150 -5 267 116 0 0 chr1 129609271 129609314 -113055039 + L1M3c LINE L1 1449 1491 -4650 27178 71 15 5 chr1 129609317 129613949 -113050404 + L1PA3 LINE L1 1227 6391 0 2427 244 97 14 chr1 129613978 129614964 -113049389 - L1M4 LINE L1 -1471 4675 3608 264 336 47 0 chr1 129615925 129616032 -113048321 + MIR3 SINE MIR 49 160 -48 357 360 95 5 chr1 129616683 129616883 -113047470 + MIR SINE MIR 31 248 -14 216 200 0 55 chr1 129618023 129618078 -113046275 + L3b LINE CR1 1321 1372 -211 712 283 124 49 chr1 129618335 129619124 -113045229 + L2 LINE L2 2470 3297 -16 316 192 12 21 chr1 129619266 129619379 -113044974 - L1MC/D LINE L1 -710 5456 5353 * 476 267 46 46 chr1 129619368 129619679 -113044674 - L1MC/D LINE L1 -1014 5132 4806 210 125 25 50 chr1 129619680 129619760 -113044593 + (TTTA)n Simple_repeat Simple_repeat 2 79 0 265 288 12 50 chr1 129619826 129619906 -113044447 + L2 LINE L2 3234 3310 -3 1076 226 153 66 chr1 129620048 129620504 -113043849 - MLT1D LTR MaLR -9 496 1 1094 211 9 9 chr1 129620669 129620887 -113043466 + MER20 DNA MER1_type 1 218 -1 371 270 146 15 chr1 129621219 129621356 -113042997 - MIR SINE MIR -90 172 18 379 275 126 24 chr1 129622181 129622348 -113042005 + MLT1E LTR MaLR 1 184 -409 340 297 74 14 chr1 129622413 129622561 -113041792 - MIR SINE MIR -34 228 72 210 290 48 73 chr1 129623183 129623307 -113041046 - MIR SINE MIR -55 207 87 363 340 56 12 chr1 129623331 129623495 -113040858 - MIR SINE MIR -56 206 35 216 286 178 18 chr1 129624417 129624597 -113039756 - MIR SINE MIR -19 189 1 621 252 43 14 chr1 129625172 129625311 -113039042 - MIR SINE MIR -91 171 29 276 295 161 20 chr1 129625547 129625696 -113038657 + MIR SINE MIR 1 170 -92 207 0 0 0 chr1 129625979 129626002 -113038351 + (TG)n Simple_repeat Simple_repeat 2 24 0 5561 78 7 25 chr1 129626729 129626858 -113037495 - L1PA14 LINE L1 -3 6158 6028 1844 153 0 56 chr1 129626858 129627035 -113037318 - AluSx SINE Alu -9 303 150 324 0 0 0 chr1 129627035 129627071 -113037282 + (TG)n Simple_repeat Simple_repeat 2 37 0 1844 153 0 56 chr1 129627071 129627214 -113037139 - AluSx SINE Alu -162 150 1 5561 78 7 25 chr1 129627214 129627737 -113036616 - L1PA14 LINE L1 -133 6028 5497 2005 122 0 41 chr1 129627737 129628059 -113036294 + AluSg SINE Alu 1 310 0 5561 78 7 25 chr1 129628059 129629357 -113034996 - L1PA14 LINE L1 -664 5497 4202 14994 61 64 4 chr1 129629622 129631729 -113032624 - L1P LINE L1 -3910 2236 4 365 254 63 11 chr1 129631801 129631990 -113032363 + L1M4 LINE L1 4967 5165 -981 281 170 90 120 chr1 129631999 129632099 -113032254 + L1M3e LINE L1 4 100 -6930 2190 236 16 43 chr1 129632257 129632827 -113031526 + L1M3e LINE L1 1724 2308 -4799 16475 37 6 0 chr1 129632827 129635588 -113028765 + L1PA2 LINE L1 3386 6150 -5 2190 236 16 43 chr1 129635588 129636260 -113028093 + L1M3e LINE L1 2308 2955 -4152 541 231 83 21 chr1 129636608 129636850 -113027503 + L1M3e LINE L1 3169 3425 -3681 2522 205 44 6 chr1 129636851 129637374 -113026979 - L1MCa LINE L1 -5842 584 42 306 266 0 13 chr1 129639443 129639522 -113024831 - MER2 DNA MER2_type -1 344 267 727 195 37 32 chr1 129639549 129639739 -113024614 - MER2 DNA MER2_type -141 204 14 314 287 20 10 chr1 129639814 129639915 -113024438 - MLT1G1 LTR MaLR -64 531 430 284 181 190 17 chr1 129639929 129640014 -113024339 - MLT1G1 LTR MaLR -218 336 210 714 165 23 15 chr1 129640016 129640149 -113024204 - AluJo SINE Alu -178 134 1 605 277 25 40 chr1 129640195 129640397 -113023956 - MLT1G1 LTR MaLR -334 261 63 891 143 4 27 chr1 129640402 129640662 -113023691 + (TA)n Simple_repeat Simple_repeat 1 253 0 590 235 160 21 chr1 129641627 129641814 -113022539 + MIR SINE MIR 43 255 -7 6650 75 2 0 chr1 129641956 129643275 -113021078 - L1PA5 LINE L1 -14 6140 4818 10086 44 1 0 chr1 129643275 129645298 -113019055 + L1PA4 LINE L1 4127 6154 -1 420 240 10 19 chr1 129645522 129645626 -113018727 - MIR SINE MIR -152 110 8 4553 107 16 1 chr1 129645800 129646499 -113017854 + L1PA10 LINE L1 5373 6081 -87 279 0 0 0 chr1 129646895 129646926 -113017427 + (TG)n Simple_repeat Simple_repeat 1 31 0 1765 155 0 24 chr1 129646928 129647218 -113017135 - AluJb SINE Alu -26 286 4 450 138 0 12 chr1 129648032 129648112 -113016241 - LTR2B LTR ERV1 0 490 412 9815 33 1 0 chr1 129648212 129649459 -113014894 - L1P LINE L1 -1835 4311 3064 290 179 0 0 chr1 129649833 129649889 -113014464 - MER58A DNA MER1_type 0 224 169 540 231 62 8 chr1 129649889 129650019 -113014334 - MER58A DNA MER1_type 0 137 1 1506 281 161 17 chr1 129650022 129650893 -113013460 + L2 LINE L2 700 1695 -1619 301 206 0 0 chr1 129651467 129651530 -113012823 + MER94 DNA DNA 26 88 -46 344 280 183 3 chr1 129652949 129653105 -113011248 + MIR SINE MIR 14 189 -63 408 130 96 0 chr1 129653172 129653287 -113011066 + MER101 LTR ERV1 1 126 -348 469 260 36 26 chr1 129654900 129655092 -113009261 + L1MC4a LINE L1 5701 5894 -1914 213 237 0 0 chr1 129655322 129655381 -113008972 + (TA)n Simple_repeat Simple_repeat 1 59 0 229 316 101 22 chr1 129655479 129655618 -113008735 - L2 LINE L2 -779 2535 2386 2800 227 65 37 chr1 129656281 129657334 -113007019 - L1M4 LINE L1 -871 5275 4156 545 258 94 42 chr1 129657633 129657963 -113006390 + L1MDa LINE L1 1872 2218 -4322 263 214 51 68 chr1 129658061 129658178 -113006175 + L1MDa LINE L1 2319 2433 -4288 1066 191 98 0 chr1 129658188 129658434 -113005919 + L1 LINE L1 3978 4247 -1899 342 0 0 0 chr1 129658435 129658473 -113005880 + (CA)n Simple_repeat Simple_repeat 1 38 0 496 214 23 0 chr1 129658481 129658612 -113005741 + L1 LINE L1 4289 4422 -1724 1073 90 8 0 chr1 129658612 129658746 -113005607 + AluSq/x SINE Alu 1 135 -178 808 264 15 31 chr1 129659373 129659634 -113004719 - AluJb SINE Alu -53 259 3 270 348 209 6 chr1 129659646 129659804 -113004549 - MIR SINE MIR -57 205 16 301 340 80 5 chr1 129661435 129661647 -113002706 - L1M4 LINE L1 -946 5200 4973 253 272 61 14 chr1 129661764 129661911 -113002442 - L1M4 LINE L1 -1315 4831 4678 522 284 126 22 chr1 129661919 129662141 -113002212 - L2 LINE L2 -5 3308 3064 295 255 64 28 chr1 129662157 129662298 -113002055 - L1M4 LINE L1 -1488 4658 4513 892 287 27 24 chr1 129662306 129663026 -113001327 + L1MEc LINE L1 41 836 -5560 4646 188 21 26 chr1 129663141 129664488 -112999865 - L1M3 LINE L1 -556 5676 4337 7501 98 1 3 chr1 129664494 129666379 -112997974 - L1PA8 LINE L1 -2 6170 4287 4034 109 2 2 chr1 129666383 129666996 -112997357 + L1PA8 LINE L1 3661 4273 -1873 * 4545 194 52 54 chr1 129666992 129667217 -112997136 - L1M3 LINE L1 -1860 4350 4126 2434 107 8 6 chr1 129667217 129667571 -112996782 + THE1A LTR MaLR 1 355 0 4545 194 52 54 chr1 129667571 129668061 -112996292 - L1M3 LINE L1 -2084 4126 3637 2407 83 0 0 chr1 129668061 129668363 -112995990 - AluY SINE Alu -9 302 1 4545 194 52 54 chr1 129668363 129669137 -112995216 - L1M3 LINE L1 -2573 3637 2863 482 255 38 28 chr1 129669134 129669153 -112995200 - L1M3 LINE L1 -4980 1151 1134 * 9273 32 0 0 chr1 129669153 129671028 -112993325 - L1PA4 LINE L1 -8 6147 4273 482 255 38 28 chr1 129671028 129671221 -112993132 - L1M3 LINE L1 -4997 1134 943 674 304 21 31 chr1 129671548 129671837 -112992516 - L1M3 LINE L1 -5855 286 1 1595 176 46 0 chr1 129671860 129672121 -112992232 + AluSx SINE Alu 7 279 -33 432 0 0 0 chr1 129672121 129672169 -112992184 + (CA)n Simple_repeat Simple_repeat 2 49 0 222 37 0 0 chr1 129672863 129672890 -112991463 + (TG)n Simple_repeat Simple_repeat 1 27 0 1104 212 0 5 chr1 129672916 129673119 -112991234 - MER46A DNA MER2_type 0 236 35 183 80 0 0 chr1 129673244 129673269 -112991084 + (TA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr1 129673483 129673511 -112990842 + AT_rich Low_complexity Low_complexity 1 28 0 214 276 20 71 chr1 129674447 129674545 -112989808 + L2 LINE L2 2714 2806 -508 201 303 92 55 chr1 129675303 129675412 -112988941 - L2 LINE L2 -5 3308 3196 5755 164 30 10 chr1 129675678 129677351 -112987002 - L1MA4 LINE L1 -6 6294 4581 1488 169 13 3 chr1 129677334 129677636 -112986717 + L1 LINE L1 4242 4546 -1600 * 261 211 0 0 chr1 129677739 129677796 -112986557 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 241 277 0 43 chr1 129677802 129677896 -112986457 + L1MC4 LINE L1 6614 6703 -1339 231 114 0 0 chr1 129677926 129677961 -112986392 + (TA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr1 129679081 129679102 -112985251 + AT_rich Low_complexity Low_complexity 1 21 0 291 299 84 115 chr1 129679391 129679967 -112984386 + L2 LINE L2 2717 3272 0 592 301 38 19 chr1 129681052 129681261 -112983092 + MLT1J2 LTR MaLR 1 213 -237 257 274 0 14 chr1 129681388 129681461 -112982892 + MLT1I LTR MaLR 338 409 0 349 372 47 0 chr1 129681672 129681820 -112982533 + L2 LINE L2 3117 3271 -1 4917 39 5 5 chr1 129682886 129683496 -112980857 - L1PA5 LINE L1 0 6154 5545 684 57 15 0 chr1 129683496 129683598 -112980755 + L1ME LINE L1 5473 5576 -545 * 9892 30 2 1 chr1 129683597 129684817 -112979536 - L1P LINE L1 -2757 3389 2169 707 151 108 0 chr1 129684810 129684949 -112979404 + L1P LINE L1 3392 3545 -2601 * 15686 36 6 1 chr1 129684967 129687652 -112976701 + L1PA3 LINE L1 3457 6152 -3 380 322 100 15 chr1 129687677 129687938 -112976415 + L2 LINE L2 1792 2074 -1240 1433 169 4 22 chr1 129688063 129688335 -112976018 + L1PA16 LINE L1 5882 6148 -18 12672 184 44 31 chr1 129688542 129689969 -112974384 + L1MA4 LINE L1 2271 3678 -2468 2170 129 0 3 chr1 129689969 129690279 -112974074 + AluSg SINE Alu 1 309 -1 12672 184 44 31 chr1 129690279 129691814 -112972539 + L1MA4 LINE L1 3678 5272 -874 15420 156 26 16 chr1 129691816 129694347 -112970006 - Tigger2 DNA MER2_type -4 2714 154 18435 51 3 2 chr1 129694347 129697458 -112966895 - L1PA5 LINE L1 -1 6153 3039 15420 156 26 16 chr1 129697458 129697613 -112966740 - Tigger2 DNA MER2_type -2564 154 2 3833 166 31 9 chr1 129697613 129697972 -112966381 + L1MA4 LINE L1 5268 5618 -682 306 0 0 0 chr1 129697972 129698006 -112966347 + (TG)n Simple_repeat Simple_repeat 2 35 0 3833 166 31 9 chr1 129698006 129698385 -112965968 + L1MA4 LINE L1 5618 6022 -278 300 195 39 0 chr1 129698395 129698472 -112965881 + L1MB3 LINE L1 6096 6175 -8 3161 148 25 40 chr1 129698508 129699138 -112965215 + L1MA4 LINE L1 5675 6295 -5 185 176 0 20 chr1 129700174 129700225 -112964128 + (TG)n Simple_repeat Simple_repeat 2 51 0 347 328 0 17 chr1 129700228 129700344 -112964009 - MER5B DNA MER1_type -62 116 3 1944 127 143 11 chr1 129700854 129701232 -112963121 + L1MA9 LINE L1 5854 6281 -31 224 258 0 0 chr1 129701266 129701316 -112963037 + MER5B DNA MER1_type 76 136 -53 187 347 207 10 chr1 129701458 129701651 -112962702 + L2 LINE L2 2807 3037 -235 4121 152 31 3 chr1 129701839 129702515 -112961838 + MER50 LTR ERV1 7 701 -33 1546 167 25 47 chr1 129703310 129703627 -112960726 - AluJo SINE Alu -2 310 1 1904 110 0 83 chr1 129703652 129703979 -112960374 + AluSx SINE Alu 2 301 -11 2185 169 3 10 chr1 129703979 129704370 -112959983 - L1MC2 LINE L1 -37 6307 5920 1550 183 52 69 chr1 129704369 129704880 -112959473 - L1MCa LINE L1 -4518 1908 1260 * 35 41 0 0 chr1 129704997 129705046 -112959307 + AT_rich Low_complexity Low_complexity 1 49 0 330 333 47 23 chr1 129705343 129705514 -112958839 + L1M4 LINE L1 2330 2504 -3642 23 0 0 0 chr1 129705516 129705539 -112958814 + AT_rich Low_complexity Low_complexity 1 23 0 435 265 87 48 chr1 129705720 129706158 -112958195 + L1M4 LINE L1 2784 3238 -2908 22 35 0 0 chr1 129706213 129706242 -112958111 + AT_rich Low_complexity Low_complexity 1 29 0 354 265 55 45 chr1 129706535 129706826 -112957527 + L1M4 LINE L1 3664 3957 -2189 460 318 42 5 chr1 129706931 129707123 -112957230 + LTR33 LTR ERVL 1 199 -322 210 224 0 0 chr1 129707248 129707297 -112957056 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 97 0 0 chr1 129707382 129707454 -112956899 + AT_rich Low_complexity Low_complexity 1 72 0 478 306 123 29 chr1 129707511 129708004 -112956349 - L1MC2 LINE L1 -298 5823 5284 2465 145 58 8 chr1 129708108 129708606 -112955747 - L1MA4A LINE L1 0 6303 5781 307 276 45 60 chr1 129708649 129708783 -112955570 - L1MC2 LINE L1 -1096 5050 4919 373 276 29 18 chr1 129709064 129709234 -112955119 - L1MC2 LINE L1 -1520 4626 4455 234 213 0 170 chr1 129709536 129709630 -112954723 - L2 LINE L2 -45 3268 3191 495 0 0 0 chr1 129709834 129709889 -112954464 + (CA)n Simple_repeat Simple_repeat 2 56 0 474 318 139 3 chr1 129709934 129710153 -112954200 - MIR SINE MIR -12 250 3 273 345 103 21 chr1 129710164 129710309 -112954044 - L2 LINE L2 0 3272 3116 965 269 78 49 chr1 129710598 129711298 -112953055 - L2 LINE L2 -16 3297 2488 3840 33 4 0 chr1 129711299 129711758 -112952595 - L1P LINE L1 -1871 4275 3815 * 6457 45 0 6 chr1 129711757 129712563 -112951790 + L1P LINE L1 4281 5081 -1065 38665 64 12 2 chr1 129712663 129717738 -112946615 - L1P LINE L1 -1016 5130 2 367 252 200 26 chr1 129717769 129717924 -112946429 + MIR SINE MIR 76 257 -5 245 395 93 31 chr1 129717936 129718485 -112945868 - L2 LINE L2 -1034 2280 1698 180 0 0 0 chr1 129718686 129718706 -112945647 + (TAA)n Simple_repeat Simple_repeat 2 21 0 8032 143 31 9 chr1 129718708 129720094 -112944259 + L1PBa LINE L1 8 1423 -5440 7366 46 0 0 chr1 129720214 129721213 -112943140 + L1PA5 LINE L1 5156 6154 0 953 279 87 7 chr1 129721214 129721512 -112942841 - L2 LINE L2 -818 2496 2175 204 361 8 15 chr1 129723373 129723503 -112940850 + L2 LINE L2 2712 2840 -474 1964 167 98 23 chr1 129723506 129723902 -112940451 + MSTB LTR MaLR 1 426 0 189 0 0 0 chr1 129726520 129726541 -112937812 + (TTA)n Simple_repeat Simple_repeat 2 22 0 302 250 14 0 chr1 129727398 129727470 -112936883 + L2 LINE L2 2213 2285 -1029 295 367 60 20 chr1 129727475 129727723 -112936630 + LTR16C LTR ERVL 1 258 -233 606 283 62 40 chr1 129728077 129728349 -112936004 + L2 LINE L2 3035 3312 -1 417 222 206 0 chr1 129728533 129728659 -112935694 - MER5C DNA MER1_type 0 324 173 1263 261 99 34 chr1 129728724 129728765 -112935588 - L1MCb LINE L1 -1194 5370 5333 1821 125 3 59 chr1 129728765 129729086 -112935267 - AluSx SINE Alu -9 303 1 1263 261 99 34 chr1 129729086 129729668 -112934685 - L1MCb LINE L1 -1231 5333 4706 550 247 94 62 chr1 129729666 129729898 -112934455 - L1M4 LINE L1 -2220 3926 3703 * 1606 171 29 7 chr1 129729898 129730172 -112934181 - AluJo SINE Alu -23 289 10 550 247 94 62 chr1 129730172 129730188 -112934165 - L1M4 LINE L1 -2443 3703 3689 2070 76 6 85 chr1 129730188 129730516 -112933837 - AluY SINE Alu -9 302 1 550 247 94 62 chr1 129730516 129730606 -112933747 - L1M4 LINE L1 -2457 3689 3576 2332 61 6 61 chr1 129730764 129731092 -112933261 - AluY SINE Alu -1 310 1 310 341 85 0 chr1 129731092 129731256 -112933097 - L1MCb LINE L1 -2473 4091 3914 24 0 0 0 chr1 129731347 129731371 -112932982 + AT_rich Low_complexity Low_complexity 1 24 0 765 229 54 82 chr1 129731393 129731927 -112932426 - L1MCb LINE L1 -2773 3791 3273 8138 181 20 4 chr1 129731933 129734501 -112929852 - L1PA16 LINE L1 -9 6157 3550 1606 272 27 14 chr1 129734482 129735066 -112929287 - L1MCb LINE L1 -3282 3282 2691 * 2026 193 78 52 chr1 129735067 129735590 -112928763 - L1MCb LINE L1 -4884 1161 620 664 216 0 15 chr1 129735590 129735724 -112928629 - FLAM_A SINE Alu -1 132 1 2026 193 78 52 chr1 129735724 129735775 -112928578 - L1MCb LINE L1 -5425 620 572 1590 265 58 21 chr1 129735892 129736424 -112927929 - L1MCb LINE L1 -5493 552 1 486 300 28 28 chr1 129736446 129736972 -112927381 - L1MDa LINE L1 -4000 2721 2163 706 262 96 30 chr1 129737012 129737375 -112926978 - L1MDa LINE L1 -4546 2175 1789 512 279 124 22 chr1 129737376 129737920 -112926433 - L1MDa LINE L1 -4754 1967 1307 371 370 26 11 chr1 129737933 129738203 -112926150 - L1MDa LINE L1 -6024 697 424 310 311 56 0 chr1 129740066 129740156 -112924197 - L2 LINE L2 -16 3297 3203 499 330 16 22 chr1 129740160 129740342 -112924011 + MER5A DNA MER1_type 8 188 -1 236 302 95 34 chr1 129740396 129740579 -112923774 - L2 LINE L2 -215 3098 2904 1410 112 60 9 chr1 129741262 129741477 -112922876 - MER30 DNA MER1_type 0 230 5 500 283 76 20 chr1 129741565 129741892 -112922461 + L1M4 LINE L1 4169 4534 -1612 317 304 103 16 chr1 129741983 129742302 -112922051 + L1MEc LINE L1 1403 1749 -4647 396 232 32 45 chr1 129742769 129742989 -112921364 + L1MEc LINE L1 2271 2487 -3728 2343 97 54 20 chr1 129743045 129743397 -112920956 - THE1B LTR MaLR 0 364 1 334 267 49 84 chr1 129743510 129743735 -112920618 + L1MEc LINE L1 3142 3358 -2857 979 179 161 0 chr1 129743825 129744043 -112920310 - Tigger2 DNA MER2_type -10 2708 2456 189 307 73 99 chr1 129744245 129744437 -112919916 + L2 LINE L2 2596 2782 -532 5715 32 6 0 chr1 129744438 129745123 -112919230 - L1PA4 LINE L1 -1331 4815 4127 7276 43 8 0 chr1 129745123 129746450 -112917903 + L1PA4 LINE L1 4818 6151 -4 595 235 160 21 chr1 129746586 129746773 -112917580 - MIR SINE MIR -7 255 43 256 261 174 0 chr1 129750271 129750363 -112913990 + L3 LINE CR1 1088 1195 -382 941 243 38 13 chr1 129750398 129750637 -112913716 + MIR SINE MIR 8 252 -10 223 191 0 0 chr1 129750643 129750685 -112913668 + L3 LINE CR1 1230 1271 -306 236 178 0 22 chr1 129750727 129750772 -112913581 + Charlie4 DNA MER1_type 1 44 -1917 1930 100 213 146 chr1 129751343 129751835 -112912518 - LTR12 LTR ERV1 -133 581 57 370 67 0 0 chr1 129751835 129751880 -112912473 - LTR12 LTR ERV1 -617 97 53 238 229 0 0 chr1 129751880 129751928 -112912425 - LTR30 LTR ERV1 -670 52 5 349 210 57 108 chr1 129752258 129752415 -112911938 + MLT1J2 LTR MaLR 89 237 -213 230 243 27 14 chr1 129752472 129752546 -112911807 + MLT1I LTR MaLR 335 409 0 226 278 130 17 chr1 129752546 129752651 -112911702 + MLT1L LTR MaLR 421 538 -77 22 35 0 0 chr1 129753564 129753593 -112910760 + AT_rich Low_complexity Low_complexity 1 29 0 187 381 36 0 chr1 129755279 129755363 -112908990 - L2 LINE L2 -923 2391 2305 479 252 0 0 chr1 129755367 129755470 -112908883 + MIR SINE MIR 8 110 -152 43439 46 1 3 chr1 129755695 129761857 -112902496 - L1PA4 LINE L1 -1 6154 2 353 258 200 26 chr1 129761888 129762043 -112902310 + MIR SINE MIR 76 257 -5 230 389 97 31 chr1 129762055 129762600 -112901753 - L2 LINE L2 -1034 2280 1700 180 0 0 0 chr1 129762805 129762825 -112901528 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2377 148 29 63 chr1 129762827 129769876 -112894477 + L1PB1 LINE L1 8 6865 -2 243 360 10 3 chr1 129770007 129770210 -112894143 - L2 LINE L2 -2527 787 531 700 344 51 28 chr1 129770242 129770751 -112893602 + LTR33 LTR ERVL 1 521 0 735 227 36 5 chr1 129771943 129772137 -112892216 - MER105 DNA DNA 0 204 5 503 284 103 49 chr1 129772269 129773198 -112891155 - L1MC/D LINE L1 -490 5631 4678 530 284 126 22 chr1 129773206 129773428 -112890925 - L2 LINE L2 -5 3308 3064 331 255 64 28 chr1 129773444 129773585 -112890768 - L1MC/D LINE L1 -1488 4658 4513 605 274 75 72 chr1 129773593 129773900 -112890453 + L1ME2 LINE L1 41 348 -6048 1930 263 66 52 chr1 129774274 129775320 -112889033 + L1ME2 LINE L1 441 1501 -4895 6776 243 58 33 chr1 129775355 129777745 -112886608 + L1ME2 LINE L1 2850 5180 -1053 3176 167 60 14 chr1 129777745 129778393 -112885960 + L1MA4 LINE L1 5622 6299 -1 6776 243 58 33 chr1 129778393 129778458 -112885895 + L1ME2 LINE L1 5180 5242 -991 2042 133 3 3 chr1 129778458 129778751 -112885602 + AluSg SINE Alu 1 293 -17 6776 243 58 33 chr1 129778751 129779136 -112885217 + L1ME2 LINE L1 5242 5616 -617 1930 153 0 3 chr1 129779136 129779430 -112884923 - AluSx SINE Alu -17 295 3 6776 243 58 33 chr1 129779430 129779454 -112884899 + L1ME2 LINE L1 5616 5638 -595 1018 70 6 51 chr1 129779454 129779610 -112884743 + L1PA10 LINE L1 6018 6166 -2 6776 243 58 33 chr1 129779610 129779699 -112884654 + L1ME2 LINE L1 5638 5894 -339 365 271 49 28 chr1 129779860 129780004 -112884349 + MIR SINE MIR 105 251 -11 240 35 0 0 chr1 129780233 129780262 -112884091 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2064 112 26 10 chr1 129780315 129780620 -112883733 - AluSq SINE Alu -1 312 3 1011 76 6 51 chr1 129780644 129780801 -112883552 + L1PA10 LINE L1 6018 6167 -1 318 198 58 0 chr1 129780805 129780891 -112883462 + L1MB7 LINE L1 5732 5822 -344 402 264 7 14 chr1 129780896 129781044 -112883309 - L1M4 LINE L1 -1857 4289 4143 461 201 19 94 chr1 129781053 129781212 -112883141 + L1MB7 LINE L1 5866 6012 -172 1756 183 3 3 chr1 129781236 129781521 -112882832 + AluJb SINE Alu 5 289 -23 20753 159 28 15 chr1 129781583 129785384 -112878969 + L1M3 LINE L1 22 3873 -3692 599 168 9 0 chr1 129785460 129785567 -112878786 + L1MA2 LINE L1 5047 5154 -2411 8215 157 26 7 chr1 129787143 129789283 -112875070 + L1MA2 LINE L1 5091 7276 -447 1532 201 0 13 chr1 129789283 129789597 -112874756 + LTR1B LTR ERV1 1 310 -516 331 187 35 46 chr1 129789659 129789782 -112874571 + L1MA7 LINE L1 5451 5569 -591 2818 166 24 55 chr1 129789882 129790087 -112874266 + L1MA7 LINE L1 5616 5826 -465 1358 191 54 4 chr1 129790087 129790365 -112873988 + AluJo SINE Alu 1 292 -20 2818 166 24 55 chr1 129790365 129790856 -112873497 + L1MA7 LINE L1 5826 6291 0 8441 221 52 78 chr1 129790884 129791726 -112872627 + L1M3 LINE L1 4012 4875 -2712 1386 148 0 5 chr1 129791726 129791963 -112872390 + AluSg/x SINE Alu 83 318 0 8441 221 52 78 chr1 129791963 129794073 -112870280 + L1M3 LINE L1 4875 7075 -512 309 225 43 58 chr1 129794336 129794474 -112869879 + L1MA10 LINE L1 6101 6236 -98 337 255 0 10 chr1 129794519 129794621 -112869732 + L1MA10 LINE L1 6232 6332 -2 813 136 8 0 chr1 129796315 129796440 -112867913 - FLAM_A SINE Alu -6 127 2 24 0 0 0 chr1 129796441 129796465 -112867888 + AT_rich Low_complexity Low_complexity 1 24 0 3807 213 109 19 chr1 129796519 129797555 -112866798 - L1MC4a LINE L1 -53 7755 6627 1141 235 85 0 chr1 129797602 129797883 -112866470 - MER90 LTR ERV1 -26 588 284 1802 171 54 3 chr1 129797890 129798223 -112866130 - MLT1A2 LTR MaLR -11 363 14 826 179 30 98 chr1 129798236 129798471 -112865882 - MER90 LTR ERV1 -324 290 72 690 301 42 19 chr1 129798902 129799161 -112865192 - L1ME LINE L1 -451 5670 5406 447 282 117 57 chr1 129799229 129799617 -112864736 + MLT1J LTR MaLR 29 468 -43 201 39 0 0 chr1 129799924 129799950 -112864403 + (CA)n Simple_repeat Simple_repeat 1 26 0 312 212 83 114 chr1 129801169 129801301 -112863052 + MER5A DNA MER1_type 5 132 -57 249 236 16 24 chr1 129802237 129802373 -112861980 + CT-rich Low_complexity Low_complexity 1 134 0 279 0 0 0 chr1 129802874 129802905 -112861448 + (TC)n Simple_repeat Simple_repeat 2 32 0 210 375 31 10 chr1 129803245 129803341 -112861012 + MIR SINE MIR 15 112 -150 782 211 137 89 chr1 129803406 129803761 -112860592 + MSTC LTR MaLR 3 425 -3 272 237 0 26 chr1 129803773 129803801 -112860552 - MER46A DNA MER2_type -66 170 145 970 186 12 0 chr1 129803801 129803968 -112860385 + Tigger4(Zombi) DNA MER2_type 1 169 -2562 * 5926 118 28 13 chr1 129803959 129804889 -112859464 + Tigger4(Zombi) DNA MER2_type 1463 2406 -325 484 322 132 17 chr1 129804909 129805532 -112858821 - L2 LINE L2 -188 3084 2316 385 261 37 67 chr1 129805544 129805678 -112858675 + L2 LINE L2 3137 3266 -6 1183 235 32 8 chr1 129806355 129806606 -112857747 - MIR SINE MIR 0 262 6 182 250 23 57 chr1 129806873 129806961 -112857392 + L2 LINE L2 2974 3058 -214 261 235 29 15 chr1 129807045 129807113 -112857240 - MIR3 SINE MIR 0 208 140 2076 200 27 11 chr1 129807138 129807353 -112857000 - L1MB5 LINE L1 -32 6142 5932 1649 139 103 78 chr1 129807353 129807799 -112856554 + MSTB2 LTR MaLR 1 457 0 2076 200 27 11 chr1 129807799 129808023 -112856330 - L1MB5 LINE L1 -242 5932 5696 202 184 0 82 chr1 129808229 129808278 -112856075 - MIR3 SINE MIR -51 157 113 643 272 12 12 chr1 129808578 129808740 -112855613 + MER5B DNA MER1_type 13 174 -4 218 269 275 20 chr1 129809405 129809554 -112854799 - MIR SINE MIR -60 202 16 25 0 0 0 chr1 129811339 129811364 -112852989 + AT_rich Low_complexity Low_complexity 1 25 0 2609 141 13 19 chr1 129811364 129811481 -112852872 - L1MA7 LINE L1 -6 6285 6169 3585 118 61 22 chr1 129811481 129812068 -112852285 + MER4B LTR ERV1 1 610 0 2609 141 13 19 chr1 129812068 129812417 -112851936 - L1MA7 LINE L1 -122 6169 5822 1718 152 11 0 chr1 129812417 129812700 -112851653 + L1MA7 LINE L1 5537 5822 -469 714 276 23 11 chr1 129812700 129812898 -112851455 + MIR SINE MIR 54 262 0 412 319 109 19 chr1 129812953 129813163 -112851190 + L2 LINE L2 2512 2740 -574 298 289 11 21 chr1 129813208 129813323 -112851030 + CT-rich Low_complexity Low_complexity 1 113 0 378 279 133 67 chr1 129813355 129813595 -112850758 + MLT1J1 LTR MaLR 3 258 -188 496 211 9 0 chr1 129813595 129813709 -112850644 - L1MA9 LINE L1 -177 6135 6021 306 0 0 0 chr1 129813717 129813751 -112850602 + (CA)n Simple_repeat Simple_repeat 1 34 0 472 180 0 115 chr1 129813757 129813879 -112850474 + L1MA9 LINE L1 6167 6274 -38 296 298 48 0 chr1 129813894 129813998 -112850355 + MLT1J1 LTR MaLR 332 440 -6 578 295 219 11 chr1 129814001 129814357 -112849996 + L2 LINE L2 2884 3313 0 434 313 44 12 chr1 129814556 129814716 -112849637 - MIR SINE MIR -81 181 17 260 312 0 26 chr1 129814728 129814805 -112849548 + L2 LINE L2 2979 3053 -219 271 289 158 18 chr1 129814926 129815040 -112849313 - L2 LINE L2 0 3272 3143 337 251 80 49 chr1 129815067 129815230 -112849123 + MLT1J LTR MaLR 343 510 -1 4567 205 26 2 chr1 129816892 129817834 -112846519 - L1PA12 LINE L1 -1998 5586 4622 2208 16 0 0 chr1 129817835 129818088 -112846265 - L1PA2 LINE L1 -4 6151 5899 5185 9 0 0 chr1 129818088 129818671 -112845682 + L1PA2 LINE L1 5334 5916 -239 * 7256 200 9 27 chr1 129818647 129819426 -112844927 - L1PA12 LINE L1 -2935 4649 3858 310 70 0 0 chr1 129819426 129819469 -112844884 - AluY SINE Alu -5 297 255 1722 80 0 0 chr1 129819469 129819681 -112844672 - AluY SINE Alu -91 220 9 7256 200 9 27 chr1 129819681 129821078 -112843275 - L1PA12 LINE L1 -3724 3860 2479 * 30738 143 29 17 chr1 129821075 129828511 -112835842 - L1PA6 LINE L1 -6 7586 1 21 0 0 0 chr1 129828683 129828704 -112835649 + AT_rich Low_complexity Low_complexity 1 21 0 235 356 10 0 chr1 129828837 129828938 -112835415 + L2 LINE L2 2897 2998 -274 944 250 5 5 chr1 129830742 129830958 -112833395 + MER58A DNA MER1_type 5 220 -4 252 333 0 0 chr1 129830986 129831055 -112833298 - MER89-int LTR ERV1 -1479 5322 5254 184 303 61 30 chr1 129831194 129831260 -112833093 - L2 LINE L2 -25 3247 3180 422 267 62 48 chr1 129831581 129831727 -112832626 - MER63A DNA MER1_type 0 210 63 268 257 0 14 chr1 129831740 129831810 -112832543 + CT-rich Low_complexity Low_complexity 1 69 0 209 200 0 0 chr1 129832188 129832223 -112832130 + polypurine Low_complexity Low_complexity 2 36 0 2286 120 28 8 chr1 129832240 129832597 -112831756 - THE1C LTR MaLR -11 364 1 250 173 12 12 chr1 129832600 129832681 -112831672 + GA-rich Low_complexity Low_complexity 2 82 0 183 243 0 0 chr1 129833097 129833134 -112831219 + MIR SINE MIR 160 196 -66 408 280 9 32 chr1 129833204 129833345 -112831008 + MER5A DNA MER1_type 31 168 -10 2078 172 3 8 chr1 129834261 129834628 -112829725 - MLT1A1 LTR MaLR 0 365 1 279 0 0 0 chr1 129834849 129834880 -112829473 + (TG)n Simple_repeat Simple_repeat 2 32 0 265 346 216 6 chr1 129836799 129836961 -112827392 + MIR SINE MIR 16 211 -51 1981 167 0 0 chr1 129836967 129837279 -112827074 + AluJo SINE Alu 1 312 0 295 317 12 0 chr1 129837323 129837405 -112826948 + MIR SINE MIR 87 169 -93 880 307 33 0 chr1 129837430 129837674 -112826679 + MIR SINE MIR 1 252 -10 2141 142 0 0 chr1 129837692 129838003 -112826350 + AluSx SINE Alu 1 311 -1 859 246 220 16 chr1 129838348 129838657 -112825696 + MLT1G1 LTR MaLR 224 595 0 923 288 57 68 chr1 129838731 129839317 -112825036 - L2 LINE L2 0 3313 2734 2743 221 52 6 chr1 129839332 129839987 -112824366 - L1ME2 LINE L1 -8 6156 5472 290 320 33 8 chr1 129840354 129840476 -112823877 - L3b LINE CR1 -352 1231 1107 278 167 0 15 chr1 129840727 129840793 -112823560 + (CA)n Simple_repeat Simple_repeat 1 65 0 2291 179 19 5 chr1 129841327 129841747 -112822606 + MSTB LTR MaLR 1 426 0 218 348 77 52 chr1 129841747 129841902 -112822451 + L2 LINE L2 3114 3272 0 450 250 0 10 chr1 129841960 129842060 -112822293 + L2 LINE L2 1850 1948 -1366 1098 303 122 2 chr1 129842158 129842728 -112821625 + L2 LINE L2 2679 3313 0 990 335 39 14 chr1 129843313 129843755 -112820598 + L1MA8 LINE L1 1216 1668 -5828 5868 230 50 34 chr1 129843774 129846934 -112817419 + L1MA8 LINE L1 1901 5117 -2448 210 37 0 0 chr1 129846934 129846961 -112817392 + (CAA)n Simple_repeat Simple_repeat 3 29 0 5868 230 50 34 chr1 129846961 129847056 -112817297 + L1MA8 LINE L1 5117 5209 -2356 4868 48 0 0 chr1 129847050 129847668 -112816685 - L1P LINE L1 -2471 3675 3058 * 14137 30 0 2 chr1 129847668 129850109 -112814244 + L1PA3 LINE L1 3714 6152 -3 6514 163 54 66 chr1 129850118 129851758 -112812595 + L1MA8 LINE L1 5194 6814 -751 36840 96 10 6 chr1 129851765 129857906 -112806447 + L1PA6 LINE L1 2 6154 0 4437 159 36 19 chr1 129857911 129858800 -112805553 + L1MA8 LINE L1 6806 7709 -1 2261 106 3 0 chr1 129859854 129860157 -112804196 + AluSp SINE Alu 3 306 -7 198 0 0 0 chr1 129860164 129860186 -112804167 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 345 320 19 10 chr1 129861212 129861315 -112803038 - MER5A DNA MER1_type -77 112 9 421 317 47 2 chr1 129861352 129861528 -112802825 + MIR SINE MIR 21 206 -56 1502 214 14 0 chr1 129863078 129863383 -112800970 - AluJo SINE Alu 0 311 3 310 302 163 32 chr1 129863488 129863826 -112800527 + L2 LINE L2 1870 2251 -1063 183 314 0 0 chr1 129864524 129864575 -112799778 - L2 LINE L2 -16 3256 3206 183 175 53 0 chr1 129864882 129864939 -112799414 + (TA)n Simple_repeat Simple_repeat 2 61 0 24 32 0 0 chr1 129865627 129865658 -112798695 + AT_rich Low_complexity Low_complexity 1 31 0 773 305 85 8 chr1 129866628 129866887 -112797466 - L2 LINE L2 -338 2976 2698 22 43 0 21 chr1 129866963 129866990 -112797363 + AT_rich Low_complexity Low_complexity 1 28 -18 1666 178 0 16 chr1 129866990 129867299 -112797054 - AluJb SINE Alu -8 304 1 22 43 0 21 chr1 129867299 129867318 -112797035 + AT_rich Low_complexity Low_complexity 28 46 0 26 50 0 0 chr1 129868151 129868191 -112796162 + AT_rich Low_complexity Low_complexity 1 40 0 741 229 0 14 chr1 129868345 129868489 -112795864 + AluJb SINE Alu 147 288 -24 1586 226 118 21 chr1 129869302 129869874 -112794479 - L1ME LINE L1 -366 6611 5987 6522 240 48 38 chr1 129869900 129872158 -112792195 - L1MEc LINE L1 -1015 5942 3707 5718 34 0 0 chr1 129872158 129872835 -112791518 - L1PA5 LINE L1 -9 6145 5469 6522 240 48 38 chr1 129872835 129872917 -112791436 - L1MEc LINE L1 -3250 3707 3627 2326 90 0 3 chr1 129872917 129873217 -112791136 - AluY SINE Alu -11 300 2 6522 240 48 38 chr1 129873217 129874190 -112790163 - L1MEc LINE L1 -3330 3627 2619 467 279 53 27 chr1 129874452 129874703 -112789650 - L1M4 LINE L1 -6304 551 14 2450 289 85 30 chr1 129874721 129876654 -112787699 - L1MDa LINE L1 -1988 4552 2513 1458 256 26 124 chr1 129876707 129877355 -112786998 - L2 LINE L2 -1878 1436 893 2155 132 0 0 chr1 129877355 129877659 -112786694 + AluY SINE Alu 1 304 -7 1458 256 26 124 chr1 129877659 129877884 -112786469 - L2 LINE L2 -2421 893 648 195 100 0 0 chr1 129878144 129878174 -112786179 - MIR SINE MIR -109 153 124 26 30 0 0 chr1 129878182 129878215 -112786138 + AT_rich Low_complexity Low_complexity 1 33 0 4223 66 16 0 chr1 129878566 129879111 -112785242 + MER41A LTR ERV1 1 554 0 249 341 11 0 chr1 129879423 129879511 -112784842 + MIR SINE MIR 64 152 -110 21 0 0 0 chr1 129880827 129880848 -112783505 + AT_rich Low_complexity Low_complexity 1 21 0 428 294 8 0 chr1 129881649 129881768 -112782585 + MER103 DNA DNA 2 121 -45 738 190 45 34 chr1 129882150 129882329 -112782024 - MER53 DNA DNA -8 181 1 205 29 29 29 chr1 129883010 129883045 -112781308 + (GAAAA)n Simple_repeat Simple_repeat 3 37 0 545 264 119 25 chr1 129884930 129885131 -112779222 - MIR SINE MIR -31 231 12 201 326 11 45 chr1 129885393 129885482 -112778871 + L2 LINE L2 3186 3271 -1 5983 114 3 3 chr1 129886825 129887722 -112776631 + L1PB1 LINE L1 5255 6151 0 238 276 35 0 chr1 129888440 129888498 -112775855 - L2 LINE L2 -14 3258 3199 495 294 115 63 chr1 129888816 129889368 -112774985 - L1ME3 LINE L1 -278 5884 5315 432 203 0 93 chr1 129889401 129889519 -112774834 - L1MC1 LINE L1 -68 6265 6159 246 318 47 45 chr1 129889531 129890063 -112774290 - L1M4 LINE L1 -754 5392 4860 610 216 27 29 chr1 129890070 129890246 -112774107 - MLT1H LTR MaLR 0 549 398 395 320 73 35 chr1 129890299 129890640 -112773713 - L1M4 LINE L1 -1898 4248 3895 501 325 140 4 chr1 129890650 129890878 -112773475 + MIR SINE MIR 2 260 -2 242 305 43 29 chr1 129890892 129891102 -112773251 - L1M4 LINE L1 -2260 3886 3674 302 343 46 42 chr1 129891143 129891382 -112772971 - L1M4 LINE L1 -2579 3567 3328 541 363 118 12 chr1 129891605 129892175 -112772178 - L2 LINE L2 -1432 1882 1253 420 273 12 68 chr1 129892439 129892600 -112771753 - MLT1H LTR MaLR 0 549 398 1613 161 17 96 chr1 129892633 129893058 -112771295 + MER1B DNA MER1_type 1 330 -9 4752 103 28 81 chr1 129893074 129893947 -112770406 - LTR12 LTR ERV1 0 826 1 268 176 0 82 chr1 129894179 129894264 -112770089 - MLT1H LTR MaLR -459 90 13 1317 154 50 0 chr1 129894681 129894901 -112769452 + MER46A DNA MER2_type 5 235 -1 189 0 0 0 chr1 129895201 129895222 -112769131 + (TG)n Simple_repeat Simple_repeat 1 21 0 189 318 30 30 chr1 129895411 129895477 -112768876 - L2 LINE L2 -2 3270 3205 278 336 60 8 chr1 129896131 129896265 -112768088 - MIR SINE MIR -2 260 120 374 288 65 36 chr1 129896305 129896444 -112767909 - L3 LINE CR1 -1 1576 1434 519 289 41 46 chr1 129896447 129896641 -112767712 + MIR SINE MIR 14 206 -56 360 250 66 52 chr1 129896668 129896804 -112767549 - L2 LINE L2 0 3313 3176 1162 198 9 0 chr1 129896805 129897037 -112767316 + MER96B DNA MER1_type? 1 234 -183 750 307 68 41 chr1 129897112 129897506 -112766847 - L2 LINE L2 -337 2977 2573 408 290 207 0 chr1 129897543 129897688 -112766665 + MIR SINE MIR 63 237 -25 504 360 94 18 chr1 129897809 129898245 -112766108 + L2 LINE L2 2509 2977 -337 389 369 84 9 chr1 129898473 129898698 -112765655 + MIR SINE MIR 7 248 -14 260 258 122 56 chr1 129898736 129898879 -112765474 + MIR SINE MIR 31 184 -72 927 289 25 0 chr1 129898904 129899139 -112765214 - MIR SINE MIR -3 259 19 181 369 62 0 chr1 129899278 129899343 -112765010 + L2 LINE L2 3169 3237 -35 467 336 14 0 chr1 129899350 129899490 -112764863 - MER63A DNA MER1_type -6 204 63 376 234 53 0 chr1 129899495 129899589 -112764764 + MLT1K LTR MaLR 486 584 -4 244 347 42 0 chr1 129900215 129900310 -112764043 - MIR SINE MIR -87 121 23 21 36 0 0 chr1 129900547 129900575 -112763778 + AT_rich Low_complexity Low_complexity 1 28 0 1783 192 17 62 chr1 129900580 129901002 -112763351 + MER57A LTR ERV1 1 403 0 244 371 0 0 chr1 129901143 129901213 -112763140 - L2 LINE L2 0 3313 3244 4979 188 19 24 chr1 129901753 129903846 -112760507 - L1MB3 LINE L1 -1 6182 4104 1948 150 134 11 chr1 129903884 129904265 -112760088 - MSTA LTR MaLR 0 428 1 315 335 209 5 chr1 129904397 129904588 -112759765 - MIR SINE MIR -5 257 28 481 382 0 0 chr1 129904605 129904775 -112759578 + MIR3 SINE MIR 32 201 -7 2026 100 68 4 chr1 129904804 129905085 -112759268 - AluSq SINE Alu -14 299 1 307 273 8 50 chr1 129905893 129906014 -112758339 - L1MC4a LINE L1 -1859 5949 5834 249 108 0 0 chr1 129906147 129906184 -112758169 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1993 111 0 11 chr1 129906188 129906467 -112757886 - AluSc SINE Alu -33 276 1 477 248 51 22 chr1 129906686 129906823 -112757530 - MIR3 SINE MIR -2 206 66 557 288 12 12 chr1 129907140 129907303 -112757050 + MIR SINE MIR 46 208 -54 530 294 113 61 chr1 129907333 129907643 -112756710 + L1PBb LINE L1 631 956 -5893 499 328 37 53 chr1 129908111 129908410 -112755943 + L1PA15-16 LINE L1 1265 1558 -5291 * 4958 227 51 23 chr1 129908403 129911220 -112753133 + L1PBb LINE L1 1337 4282 -2566 6237 113 10 12 chr1 129912223 129913279 -112751074 - L1PB1 LINE L1 -3 6148 5091 2299 130 8 22 chr1 129913279 129913647 -112750706 + THE1B LTR MaLR 1 363 -1 11401 103 2 11 chr1 129913648 129914922 -112749431 + THE1B-int LTR MaLR 1 1261 -319 2287 86 0 0 chr1 129914922 129915235 -112749118 - AluY SINE Alu 0 313 1 11401 103 2 11 chr1 129915235 129915553 -112748800 + THE1B-int LTR MaLR 1261 1580 0 2128 133 30 22 chr1 129915553 129915914 -112748439 + THE1B LTR MaLR 1 364 0 6237 113 10 12 chr1 129915914 129915931 -112748422 - L1PB1 LINE L1 -1058 5093 5074 5103 204 14 16 chr1 129915961 129917133 -112747220 - L1PB1 LINE L1 -1411 4735 3566 34 42 0 0 chr1 129917244 129917292 -112747061 + AT_rich Low_complexity Low_complexity 1 48 0 544 106 21 0 chr1 129917398 129917492 -112746861 + (TA)n Simple_repeat Simple_repeat 2 97 0 236 307 89 10 chr1 129917691 129917792 -112746561 + MER94 DNA DNA 1 109 -25 411 307 151 0 chr1 129917993 129918185 -112746168 - L1M2 LINE L1 -734 5566 5346 2267 75 4 4 chr1 129918241 129918564 -112745789 - AluY SINE Alu 0 323 1 240 257 0 0 chr1 129918651 129918721 -112745632 - L1M4 LINE L1 -2885 3261 3192 1344 226 75 50 chr1 129918804 129918984 -112745369 - L1M4b LINE L1 -1709 5248 5074 1933 146 7 0 chr1 129918984 129919278 -112745075 + AluSx SINE Alu 1 296 -16 1344 226 75 50 chr1 129919278 129919660 -112744693 - L1M4b LINE L1 -1883 5074 4672 2023 151 131 13 chr1 129919660 129920043 -112744310 - MSTA LTR MaLR 0 428 1 9140 145 23 34 chr1 129920043 129921638 -112742715 - MSTA-int LTR MaLR 0 1580 3 696 152 188 0 chr1 129921669 129921807 -112742546 - MSTA LTR MaLR -262 166 3 832 287 65 3 chr1 129921808 129922118 -112742235 - L1M4b LINE L1 -2280 4677 4349 2516 230 48 22 chr1 129922119 129923020 -112741333 - L1M4b LINE L1 -2851 4106 3183 311 259 101 13 chr1 129923084 129923242 -112741111 - L1M4b LINE L1 -4086 3052 2881 1881 179 0 7 chr1 129923242 129923550 -112740803 - AluSx SINE Alu -6 306 1 1294 286 65 42 chr1 129923843 129924875 -112739478 - L1M4b LINE L1 -4578 2560 1331 23 54 0 0 chr1 129925848 129925885 -112738468 + AT_rich Low_complexity Low_complexity 1 37 0 228 271 10 10 chr1 129926163 129926259 -112738094 - L1MDa LINE L1 -4589 1951 1856 669 283 19 30 chr1 129926484 129926753 -112737600 - L1MDa LINE L1 -4881 1649 1384 186 333 18 0 chr1 129926798 129926855 -112737498 + MIR3 SINE MIR 132 189 -19 201 260 13 26 chr1 129927396 129927473 -112736880 + GA-rich Low_complexity Low_complexity 3 78 0 338 301 0 18 chr1 129927902 129928015 -112736338 + 7SK RNA RNA 3 113 -80 503 267 34 7 chr1 129929937 129930083 -112734270 - L2 LINE L2 0 3313 3164 241 354 39 24 chr1 129930144 129930271 -112734082 + L1ME LINE L1 331 459 -5937 5324 40 0 0 chr1 129930779 129931466 -112732887 - L1PA5 LINE L1 -255 5900 5214 1945 50 0 0 chr1 129931466 129931696 -112732657 + L1PA5 LINE L1 5914 6154 0 2783 243 52 29 chr1 129931903 129932978 -112731375 + L1ME LINE L1 776 1843 -4563 643 234 47 82 chr1 129932981 129933405 -112730948 + L1ME LINE L1 2012 2420 -3986 704 262 70 0 chr1 129933568 129933755 -112730598 + MER58C DNA MER1_type 5 204 -11 1785 234 18 8 chr1 129933770 129934271 -112730082 + L1ME LINE L1 2864 3369 -3037 1352 250 67 54 chr1 129934276 129934796 -112729557 + L1ME LINE L1 5025 5551 -855 261 0 0 0 chr1 129935008 129935037 -112729316 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 958 234 15 45 chr1 129935060 129935325 -112729028 + L1ME LINE L1 5596 5852 -574 706 244 6 17 chr1 129935317 129935497 -112728856 - L1MD1 LINE L1 -250 5992 5815 * 226 241 63 25 chr1 129935488 129935567 -112728786 - L1MD1 LINE L1 -868 5278 5197 * 457 298 88 18 chr1 129936219 129936390 -112727963 - MIR3 SINE MIR -15 193 11 2095 92 7 7 chr1 129938019 129938345 -112726008 - AluSx SINE Alu 0 326 1 503 97 58 10 chr1 129939271 129939374 -112724979 + GA-rich Low_complexity Low_complexity 4 111 0 1828 195 90 125 chr1 129939575 129939641 -112724712 - MLT1E1 LTR MaLR 0 654 587 2210 121 0 3 chr1 129939641 129939947 -112724406 - AluSx SINE Alu -7 305 1 1828 195 90 125 chr1 129939947 129940352 -112724001 - MLT1E1 LTR MaLR -67 587 210 1728 97 0 0 chr1 129940352 129940589 -112723764 - L1PA5 LINE L1 -8 6146 5910 1828 195 90 125 chr1 129940589 129940772 -112723581 - MLT1E1 LTR MaLR -444 210 22 1006 263 116 11 chr1 129941150 129941606 -112722747 + HAL1 LINE L1 2004 2507 0 321 307 147 6 chr1 129941679 129941842 -112722511 - MIR SINE MIR -59 203 18 386 294 41 41 chr1 129942270 129942467 -112721886 - MIR SINE MIR -31 231 35 274 314 69 0 chr1 129943537 129943639 -112720714 - MIR SINE MIR -64 198 90 269 182 36 0 chr1 129943790 129943845 -112720508 - MER103 DNA DNA -107 59 3 424 270 164 13 chr1 129944255 129944407 -112719946 + MER5A DNA MER1_type 9 183 -6 208 387 0 0 chr1 129944698 129944773 -112719580 + L2 LINE L2 2988 3062 -210 193 306 0 56 chr1 129944942 129945014 -112719339 - L2 LINE L2 -1 3312 3245 672 316 47 12 chr1 129945297 129945550 -112718803 + MIR SINE MIR 1 262 0 288 317 24 32 chr1 129946352 129946475 -112717878 - MER5A DNA MER1_type 0 189 68 2804 10 0 0 chr1 129946485 129946796 -112717557 + AluY SINE Alu 1 311 0 2859 102 68 0 chr1 129947132 129947575 -112716778 - L1PA14 LINE L1 -9 6152 5680 1151 291 93 23 chr1 129949578 129950456 -112713897 - L1ME3 LINE L1 -207 5955 5009 2457 262 28 72 chr1 129950485 129951379 -112712974 - L1ME3A LINE L1 -8 6162 5324 787 111 40 8 chr1 129951379 129951505 -112712848 - L1PA15 LINE L1 -5 6160 6031 2457 262 28 72 chr1 129951505 129951723 -112712630 - L1ME3A LINE L1 -846 5324 5098 294 285 113 19 chr1 129951954 129952210 -112712143 - L1ME3A LINE L1 -1384 4762 4483 1934 156 43 3 chr1 129952296 129952642 -112711711 + MER46B DNA MER2_type 2 236 0 309 262 179 14 chr1 129952697 129952842 -112711511 - L1ME3A LINE L1 -1948 4198 4030 * 392 162 14 0 chr1 129952834 129952908 -112711445 + L1MA4A LINE L1 6049 6123 -180 447 234 0 0 chr1 129952908 129953007 -112711346 + L1PB4 LINE L1 6044 6154 -2 1123 273 71 40 chr1 129953010 129953782 -112710571 - L1ME3A LINE L1 -2102 4044 3249 326 313 18 12 chr1 129953790 129953953 -112710400 - L1ME3A LINE L1 -3015 3131 2968 49 32 0 0 chr1 129954033 129954096 -112710257 + AT_rich Low_complexity Low_complexity 1 63 0 2103 82 0 4 chr1 129954199 129954466 -112709887 - AluSp SINE Alu -16 297 32 2011 229 178 33 chr1 129954495 129955249 -112709104 + L1MC4 LINE L1 6342 7204 -838 24 0 0 0 chr1 129955305 129955329 -112709024 + AT_rich Low_complexity Low_complexity 1 24 0 4468 188 54 15 chr1 129955358 129957091 -112707262 + L1MB2 LINE L1 4382 6171 0 1213 250 42 25 chr1 129957149 129957509 -112706844 + L1MC/D LINE L1 5419 5784 -2024 568 188 36 0 chr1 129957962 129958074 -112706279 - MER97b DNA MER1_type? 0 1053 938 342 0 0 0 chr1 129958749 129958787 -112705566 + (TG)n Simple_repeat Simple_repeat 1 38 0 2185 52 0 4 chr1 129958787 129959055 -112705298 - AluY SINE Alu -31 280 14 1876 247 54 31 chr1 129959344 129959505 -112704848 - MER97b DNA MER1_type? -194 859 703 1764 172 15 9 chr1 129959505 129959837 -112704516 - L1PA16 LINE L1 -16 6150 5817 1876 247 54 31 chr1 129959837 129960355 -112703998 - MER97b DNA MER1_type? -350 703 164 24811 93 4 7 chr1 129960372 129964764 -112699589 - L1PA8 LINE L1 -2 6170 1795 1388 139 0 0 chr1 129964765 129964959 -112699394 - AluSx SINE Alu -118 194 1 2162 247 68 76 chr1 129964968 129965437 -112698916 - L1ME LINE L1 -4963 1117 646 216 67 0 0 chr1 129965437 129965467 -112698886 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 2162 247 68 76 chr1 129965467 129965480 -112698873 - L1ME LINE L1 -5434 646 634 378 0 0 0 chr1 129965480 129965522 -112698831 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2162 247 68 76 chr1 129965522 129966021 -112698332 - L1ME LINE L1 -5446 634 161 1924 206 29 22 chr1 129967021 129967737 -112696616 - L1ME LINE L1 -480 6184 5472 282 164 16 0 chr1 129967740 129967801 -112696552 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 581 77 54 23 chr1 129967808 129968070 -112696283 + (TA)n Simple_repeat Simple_repeat 1 270 0 309 94 87 7 chr1 129968085 129968223 -112696130 + (TATAA)n Simple_repeat Simple_repeat 1 149 0 * 565 42 90 12 chr1 129968192 129968358 -112695995 + (TA)n Simple_repeat Simple_repeat 2 180 0 520 99 64 17 chr1 129968377 129968549 -112695804 + (TA)n Simple_repeat Simple_repeat 1 180 0 240 310 0 0 chr1 129968553 129968611 -112695742 - L1ME LINE L1 -1174 5470 5413 22 0 0 0 chr1 129968826 129968848 -112695505 + AT_rich Low_complexity Low_complexity 1 22 0 1727 285 94 56 chr1 129968895 129970545 -112693808 - L1ME LINE L1 -3714 2930 1167 2281 102 30 24 chr1 129970862 129971235 -112693118 - THE1C LTR MaLR 0 375 1 258 395 38 0 chr1 129973122 129973279 -112691074 + L3 LINE CR1 1401 1563 -14 517 228 101 6 chr1 129974612 129974770 -112689583 - MIR SINE MIR -27 235 63 461 221 215 19 chr1 129975292 129975450 -112688903 + MER5A DNA MER1_type 1 189 0 218 320 13 0 chr1 129976236 129976314 -112688039 + GA-rich Low_complexity Low_complexity 3 81 0 343 278 24 24 chr1 129976338 129976464 -112687889 - MIR SINE MIR -89 173 48 644 341 0 16 chr1 129977708 129977954 -112686399 - MIR SINE MIR -7 255 14 2568 142 16 23 chr1 129979228 129979665 -112684688 - Tigger2a DNA MER2_type 0 434 1 401 367 101 22 chr1 129979757 129980212 -112684141 - L2 LINE L2 -213 3059 2571 288 278 0 0 chr1 129982132 129982222 -112682131 - L1MC4 LINE L1 -1339 6703 6614 310 111 63 0 chr1 129982223 129982286 -112682067 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 331 311 0 0 chr1 129982286 129982376 -112681977 - L1MC4 LINE L1 -1339 6703 6614 331 311 0 0 chr1 129982296 129982386 -112681967 + L1MC4 LINE L1 6614 6703 -1339 226 156 31 47 chr1 129982389 129982453 -112681900 + L1MCa LINE L1 2006 2068 -4358 237 65 0 0 chr1 129982453 129982484 -112681869 + (TA)n Simple_repeat Simple_repeat 2 32 0 239 368 132 0 chr1 129982746 129982852 -112681501 - L2 LINE L2 -46 3226 3107 2093 99 3 11 chr1 129982892 129983204 -112681149 + AluSq SINE Alu 1 310 0 28 0 0 0 chr1 129984593 129984621 -112679732 + AT_rich Low_complexity Low_complexity 1 28 0 1883 144 14 0 chr1 129985483 129985761 -112678592 + AluJb SINE Alu 12 293 -19 808 145 50 17 chr1 129985812 129985991 -112678362 + MER53 DNA DNA 4 188 -1 246 388 0 10 chr1 129986364 129986462 -112677891 + L2 LINE L2 2721 2817 -497 2454 119 5 24 chr1 129987045 129987424 -112676929 - THE1C LTR MaLR 0 375 4 230 366 71 9 chr1 129987514 129987626 -112676727 - MIR SINE MIR -95 167 49 1197 271 44 9 chr1 129988999 129989342 -112675011 + MLT1I LTR MaLR 55 409 0 1292 275 47 51 chr1 129989982 129990154 -112674199 - L1ME3A LINE L1 -11 6159 5988 2570 71 0 0 chr1 129990154 129990464 -112673889 - AluY SINE Alu -1 310 1 1292 275 47 51 chr1 129990464 129990863 -112673490 - L1ME3A LINE L1 -182 5988 5588 1527 155 88 99 chr1 129990945 129991378 -112672975 - MSTA LTR MaLR 0 428 1 9244 149 12 41 chr1 129991378 129991944 -112672409 - MSTA-int LTR MaLR 0 1580 999 2206 144 5 32 chr1 129991944 129992318 -112672035 + THE1B LTR MaLR 1 364 0 11291 109 5 2 chr1 129992318 129993894 -112670459 + THE1B-int LTR MaLR 1 1580 0 2352 135 5 24 chr1 129993894 129994265 -112670088 + THE1B LTR MaLR 1 364 0 9244 149 12 41 chr1 129994265 129995321 -112669032 - MSTA-int LTR MaLR -578 1002 3 1934 174 86 13 chr1 129995325 129995722 -112668631 - MSTA LTR MaLR -2 426 1 2028 111 42 10 chr1 129996192 129996481 -112667872 + AluY SINE Alu 1 298 -13 5776 215 51 64 chr1 129996502 129996905 -112667448 + L1MB7 LINE L1 3170 3577 -2607 1320 214 128 25 chr1 129996905 129997264 -112667089 + MSTD LTR MaLR 1 396 0 5776 215 51 64 chr1 129997264 129998177 -112666176 + L1MB7 LINE L1 3577 4501 -1683 5354 135 19 8 chr1 129998177 129999433 -112664920 + L1PA16 LINE L1 4883 6151 -15 5776 215 51 64 chr1 129999433 129999572 -112664781 + L1MB7 LINE L1 4501 4640 -1544 2359 95 0 0 chr1 129999572 129999866 -112664487 - AluY SINE Alu -17 294 1 5776 215 51 64 chr1 129999866 130001475 -112662878 + L1MB7 LINE L1 4640 6183 -1 210 177 32 65 chr1 130002135 130002197 -112662156 + CT-rich Low_complexity Low_complexity 2 61 0 308 200 80 88 chr1 130002773 130002898 -112661455 + MIR SINE MIR 98 221 -41 297 273 159 8 chr1 130002963 130003095 -112661258 - MIR SINE MIR -71 191 40 443 325 94 10 chr1 130003265 130003468 -112660885 + MIR SINE MIR 7 226 -36 511 206 10 10 chr1 130003953 130004075 -112660278 + FLAM_A SINE Alu 18 139 0 683 296 93 17 chr1 130004259 130004860 -112659493 - L1M4 LINE L1 -2801 3345 2699 264 261 0 34 chr1 130006811 130006899 -112657454 + MIR SINE MIR 132 216 -46 750 238 0 18 chr1 130007439 130007603 -112656750 + AluJo SINE Alu 122 282 -30 189 0 0 0 chr1 130007606 130007627 -112656726 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 495 296 55 68 chr1 130007689 130008087 -112656266 + L1ME3A LINE L1 2131 2523 -3873 186 43 0 0 chr1 130008131 130008154 -112656199 + (TG)n Simple_repeat Simple_repeat 2 24 0 5664 263 104 25 chr1 130008258 130013246 -112651107 - L1ME2 LINE L1 -71 6027 550 1767 266 112 25 chr1 130013291 130014683 -112649670 + L1ME3A LINE L1 4508 6028 -211 431 248 10 0 chr1 130014683 130014784 -112649569 - MLT1A1 LTR MaLR 0 365 264 37510 55 2 0 chr1 130014795 130020315 -112644038 - L1PA5 LINE L1 0 6154 623 660 124 0 0 chr1 130020313 130020410 -112643943 - L1PA5 LINE L1 -6048 98 2 * 1208 100 119 33 chr1 130020410 130020620 -112643733 + MER30 DNA MER1_type 3 230 0 1428 222 7 3 chr1 130020620 130020904 -112643449 - MLT1A1 LTR MaLR -80 285 1 319 217 179 43 chr1 130020904 130021088 -112643265 + L1ME3A LINE L1 6024 6232 -7 204 192 39 19 chr1 130021540 130021592 -112642761 + C-rich Low_complexity Low_complexity 1 53 0 392 331 61 36 chr1 130022721 130023060 -112641293 - LTR16A LTR ERVL -9 441 44 1458 163 31 20 chr1 130023099 130023393 -112640960 - L1MA8 LINE L1 -8 6283 5987 617 307 63 41 chr1 130023597 130024011 -112640342 - ERVL LTR ERVL -1039 3957 3535 259 387 30 6 chr1 130024109 130024277 -112640076 - ERVL LTR ERVL -1939 3825 3654 217 331 21 23 chr1 130024693 130024843 -112639510 + MIR SINE MIR 50 236 -26 851 278 144 31 chr1 130026369 130026505 -112637848 + LTR33 LTR ERVL 48 167 -354 2266 104 0 0 chr1 130026505 130026803 -112637550 - AluSq SINE Alu -15 298 1 851 278 144 31 chr1 130026803 130027090 -112637263 + LTR33 LTR ERVL 167 519 -2 273 357 12 0 chr1 130027258 130027342 -112637011 - L2 LINE L2 -35 3237 3153 382 187 0 16 chr1 130029514 130029637 -112634716 + (TA)n Simple_repeat Simple_repeat 2 122 0 235 215 25 13 chr1 130029686 130029765 -112634588 + (TA)n Simple_repeat Simple_repeat 2 81 0 700 284 23 37 chr1 130029770 130029985 -112634368 + MLT1G1 LTR MaLR 50 261 -334 740 159 23 15 chr1 130030032 130030164 -112634189 + AluJo SINE Alu 2 134 -178 303 181 190 17 chr1 130030166 130030251 -112634102 + MLT1G1 LTR MaLR 210 324 -218 338 287 20 10 chr1 130030265 130030366 -112633987 + MLT1G1 LTR MaLR 430 531 -64 747 194 42 26 chr1 130030438 130030629 -112633724 + MER2 DNA MER2_type 11 204 -141 597 154 66 88 chr1 130030885 130031067 -112633286 + MER20 DNA MER1_type 24 201 -18 1160 261 25 31 chr1 130031095 130031421 -112632932 - MLT1H LTR MaLR -196 353 30 230 245 0 0 chr1 130031818 130031867 -112632486 + L2 LINE L2 3265 3313 0 4092 179 56 10 chr1 130031892 130033019 -112631334 + L1MB2 LINE L1 4980 6146 -25 1644 6 0 0 chr1 130033006 130033187 -112631166 - L1PA2 LINE L1 -202 5953 5773 * 390 92 0 15 chr1 130033187 130033251 -112631102 + L1PA2 LINE L1 6092 6155 0 397 38 0 0 chr1 130033382 130033435 -112630918 + L1PA2 LINE L1 6103 6155 0 189 0 0 0 chr1 130033471 130033492 -112630861 + (T)n Simple_repeat Simple_repeat 1 21 0 428 254 97 0 chr1 130033911 130034076 -112630277 - MIR SINE MIR -7 255 75 9426 216 14 32 chr1 130034086 130034426 -112629927 - L1 LINE L1 -1400 4746 4402 219 36 0 0 chr1 130034426 130034454 -112629899 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 9426 216 14 32 chr1 130034454 130036454 -112627899 - L1 LINE L1 -1744 4402 2447 25 51 0 0 chr1 130036509 130036548 -112627805 + AT_rich Low_complexity Low_complexity 1 39 0 934 166 40 11 chr1 130036638 130036813 -112627540 + L1MC4a LINE L1 7229 7408 -400 290 125 0 0 chr1 130036813 130036853 -112627500 + Alu SINE Alu 5 44 -257 448 86 0 0 chr1 130036863 130036921 -112627432 - AluSg/x SINE Alu -180 130 73 1952 231 72 15 chr1 130036921 130037446 -112626907 - L1MC3 LINE L1 -514 7271 6717 510 288 97 80 chr1 130037454 130037919 -112626434 - HAL1 LINE L1 -467 2040 1584 1282 139 16 37 chr1 130037919 130038164 -112626189 - L1PA16 LINE L1 -5 6161 5922 510 288 97 80 chr1 130038164 130038759 -112625594 - HAL1 LINE L1 -923 1584 962 545 268 148 12 chr1 130038786 130039029 -112625324 - HAL1 LINE L1 -915 1592 1317 2313 84 0 11 chr1 130041997 130042313 -112622040 + AluSg SINE Alu 1 313 0 4755 184 42 15 chr1 130042363 130044225 -112620128 - L1MB1 LINE L1 -1 5991 4090 4381 165 64 48 chr1 130044248 130044423 -112619930 - L1MA7 LINE L1 -9 6282 6111 351 0 0 0 chr1 130044423 130044462 -112619891 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2087 117 0 0 chr1 130044462 130044743 -112619610 - AluSg SINE Alu -29 281 1 4381 165 64 48 chr1 130044743 130045554 -112618799 - L1MA7 LINE L1 -179 6112 5279 6909 70 27 11 chr1 130045555 130046492 -112617861 - L1PA7 LINE L1 0 6154 5215 2041 125 0 0 chr1 130046529 130046816 -112617537 - L1P3 LINE L1 -6169 292 6 741 201 13 0 chr1 130046835 130046989 -112617364 - L1MA7 LINE L1 -869 5277 5122 * 1267 214 7 87 chr1 130046971 130047309 -112617044 - L1MB1 LINE L1 -3645 2325 2024 1727 154 8 0 chr1 130047309 130047569 -112616784 - AluSx SINE Alu -45 267 6 1267 214 7 87 chr1 130047569 130047645 -112616708 - L1MB1 LINE L1 -3946 2024 1944 250 249 143 41 chr1 130047720 130048138 -112616215 - L1MB1 LINE L1 -4034 1936 1476 484 235 10 0 chr1 130048146 130048244 -112616109 + Tigger5 DNA MER2_type 2224 2322 -1 1154 151 118 16 chr1 130048252 130048497 -112615856 + L1MB3 LINE L1 5912 6181 -2 608 261 17 17 chr1 130048499 130048679 -112615674 + L1M4c LINE L1 1676 1855 -4529 1530 302 56 21 chr1 130048681 130049580 -112614773 - L1MB1 LINE L1 -4915 976 1 1420 277 101 8 chr1 130050502 130051029 -112613324 + L2 LINE L2 2120 2695 -619 2160 105 3 16 chr1 130051701 130052014 -112612339 - AluSg1 SINE Alu 0 309 1 26 0 0 0 chr1 130052858 130052884 -112611469 + AT_rich Low_complexity Low_complexity 1 26 0 181 203 0 51 chr1 130054051 130054130 -112610223 + CT-rich Low_complexity Low_complexity 3 77 0 498 226 59 70 chr1 130056449 130056635 -112607718 + MIR SINE MIR 79 262 0 21 36 0 0 chr1 130059794 130059822 -112604531 + AT_rich Low_complexity Low_complexity 1 28 0 285 75 0 0 chr1 130060102 130060142 -112604211 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 290 286 9 27 chr1 130060290 130060402 -112603951 - MIR SINE MIR -57 151 42 1451 125 0 26 chr1 130061811 130062043 -112602310 - AluJb SINE Alu 0 312 87 414 103 39 0 chr1 130064403 130064481 -112599872 + GA-rich Low_complexity Low_complexity 2 82 0 234 62 0 0 chr1 130067499 130067531 -112596822 + (CA)n Simple_repeat Simple_repeat 2 33 0 333 0 0 0 chr1 130071280 130071317 -112593036 + (TG)n Simple_repeat Simple_repeat 2 38 0 2276 72 0 20 chr1 130071498 130071791 -112592562 + AluSg1 SINE Alu 14 300 -9 186 103 0 0 chr1 130072960 130072989 -112591364 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 299 233 23 23 chr1 130074139 130074225 -112590128 + MIR3 SINE MIR 117 202 -6 296 270 40 48 chr1 130075093 130075219 -112589134 + L2 LINE L2 3171 3295 -18 201 147 0 0 chr1 130075307 130075341 -112589012 + (TA)n Simple_repeat Simple_repeat 1 34 0 718 284 15 5 chr1 130075422 130075623 -112588730 + MIR SINE MIR 5 207 -55 713 278 24 40 chr1 130076867 130077115 -112587238 - MIR SINE MIR -17 245 2 246 62 0 0 chr1 130078823 130078855 -112585498 + (TG)n Simple_repeat Simple_repeat 2 33 0 491 254 92 49 chr1 130079334 130079540 -112584813 + MIR SINE MIR 18 232 -30 2266 122 0 3 chr1 130079719 130080030 -112584323 + AluSq SINE Alu 1 310 -3 2019 131 156 8 chr1 130082374 130082740 -112581613 - MSTA LTR MaLR 0 428 9 2214 112 27 0 chr1 130084111 130084406 -112579947 + AluSx SINE Alu 1 303 -9 195 279 0 0 chr1 130084407 130084450 -112579903 - MER5B DNA MER1_type -135 43 1 22 35 0 0 chr1 130084834 130084863 -112579490 + AT_rich Low_complexity Low_complexity 1 29 0 274 333 70 39 chr1 130085470 130085626 -112578727 + L2 LINE L2 3112 3272 0 205 254 16 16 chr1 130086687 130086750 -112577603 + (TA)n Simple_repeat Simple_repeat 2 64 0 662 275 103 29 chr1 130086869 130087218 -112577135 - L1MC4a LINE L1 -1980 5828 5454 351 304 0 0 chr1 130088113 130088205 -112576148 + MIR SINE MIR 48 139 -123 345 161 58 46 chr1 130088365 130088452 -112575901 - MLT1I LTR MaLR -4 405 318 384 251 183 47 chr1 130088453 130088890 -112575463 - MLT1G3 LTR MaLR 0 595 30 364 211 14 36 chr1 130088951 130089042 -112575311 - MLT1J2 LTR MaLR -123 327 238 215 353 35 35 chr1 130090758 130090874 -112573479 + L2 LINE L2 3148 3263 -9 * 328 301 89 27 chr1 130090873 130091019 -112573334 + MIR3 SINE MIR 8 162 -46 193 349 15 0 chr1 130091032 130091098 -112573255 - MER5A DNA MER1_type -60 129 63 212 194 0 40 chr1 130092500 130092562 -112571791 + T-rich Low_complexity Low_complexity 1 94 0 270 0 0 0 chr1 130093563 130093593 -112570760 + (TC)n Simple_repeat Simple_repeat 2 31 0 971 127 122 55 chr1 130094041 130094187 -112570166 - MER96B DNA MER1_type? -72 345 175 1766 209 53 11 chr1 130094187 130094546 -112569807 - MLT1A2 LTR MaLR 0 374 1 971 127 122 55 chr1 130094546 130094636 -112569717 - MER96B DNA MER1_type? -242 175 93 377 0 0 0 chr1 130094636 130094676 -112569677 - L1P2 LINE L1 -445 5710 5671 616 208 8 8 chr1 130094676 130094694 -112569659 + MER96B DNA MER1_type? 288 305 -112 4028 37 4 0 chr1 130094694 130095141 -112569212 + L1PA4 LINE L1 5694 6152 -3 616 208 8 8 chr1 130095141 130095252 -112569101 + MER96B DNA MER1_type? 304 417 0 2370 62 0 36 chr1 130095641 130095946 -112568407 - AluY SINE Alu -17 294 1 436 231 0 111 chr1 130096057 130096256 -112568097 - L1MC4 LINE L1 0 8042 7866 1493 159 12 31 chr1 130096371 130096629 -112567724 - MLT1A1 LTR MaLR 0 365 113 2456 164 35 26 chr1 130100222 130100649 -112563704 - Tigger2a DNA MER2_type -3 431 1 531 267 53 27 chr1 130103420 130103607 -112560746 - MER117 DNA MER1_type -4 193 2 190 211 0 0 chr1 130104839 130104877 -112559476 + MIR SINE MIR 102 139 -69 316 350 8 0 chr1 130105064 130105181 -112559172 - MIR SINE MIR -113 149 32 22 35 0 0 chr1 130105974 130106003 -112558350 + AT_rich Low_complexity Low_complexity 1 29 0 32 26 0 0 chr1 130106335 130106374 -112557979 + AT_rich Low_complexity Low_complexity 1 39 0 296 222 77 17 chr1 130109490 130109579 -112554774 - MIR SINE MIR -32 176 84 425 176 11 33 chr1 130110239 130110330 -112554023 - L2 LINE L2 0 3313 3225 442 311 26 13 chr1 130110653 130110804 -112553549 - MIR SINE MIR -82 180 28 279 281 53 26 chr1 130110890 130111004 -112553349 + L2 LINE L2 3197 3313 0 24 0 0 0 chr1 130111871 130111895 -112552458 + AT_rich Low_complexity Low_complexity 1 24 0 532 345 50 14 chr1 130112558 130112778 -112551575 + MIR SINE MIR 2 229 -33 3401 105 20 30 chr1 130112913 130113180 -112551173 - L1PA16 LINE L1 -9 6157 5896 1995 170 0 3 chr1 130113180 130113492 -112550861 - AluJb SINE Alu -1 311 1 3401 105 20 30 chr1 130113492 130113721 -112550632 - L1PA16 LINE L1 -270 5896 5666 2259 120 20 0 chr1 130113722 130114071 -112550282 + L1P4 LINE L1 5254 5609 -557 292 217 33 0 chr1 130115238 130115298 -112549055 + L2 LINE L2 3230 3291 -22 439 184 95 34 chr1 130115806 130115953 -112548400 + MIR SINE MIR 105 260 -2 295 297 20 0 chr1 130116073 130116174 -112548179 - MIR3 SINE MIR -41 167 65 226 240 0 0 chr1 130116487 130116537 -112547816 - MIR SINE MIR -76 132 83 332 235 151 8 chr1 130117962 130118081 -112546272 + L2 LINE L2 3160 3295 -18 391 319 118 0 chr1 130121621 130121825 -112542528 - MIR SINE MIR -18 244 17 2021 130 0 0 chr1 130121901 130122222 -112542131 + AluSx SINE Alu 1 321 0 321 304 157 0 chr1 130123677 130123779 -112540574 - MIR3 SINE MIR -9 199 82 317 297 0 0 chr1 130124603 130124677 -112539676 - tRNA-Ile-ATT tRNA tRNA -3 74 1 2036 113 29 0 chr1 130125593 130125713 -112538640 + AluSg SINE Alu 1 116 -199 261 0 0 0 chr1 130125713 130125742 -112538611 + (CA)n Simple_repeat Simple_repeat 2 30 0 2036 113 29 0 chr1 130125742 130125928 -112538425 + AluSg SINE Alu 116 315 0 237 285 21 59 chr1 130127585 130127771 -112536582 + (TCTCTG)n Simple_repeat Simple_repeat 1 179 0 273 178 0 41 chr1 130128191 130128264 -112536089 - L2 LINE L2 -85 3228 3159 195 358 62 0 chr1 130129984 130130065 -112534288 + MIR SINE MIR 2 87 -175 374 307 21 85 chr1 130130964 130131153 -112533200 + MIR3 SINE MIR 18 194 -14 1609 170 0 14 chr1 130131410 130131699 -112532654 - AluJo SINE Alu -2 310 26 473 281 91 8 chr1 130132454 130132585 -112531768 + MIR SINE MIR 1 144 -64 478 303 100 56 chr1 130134265 130134961 -112529392 - L2 LINE L2 -6 3307 2577 5508 93 11 26 chr1 130135035 130135721 -112528632 - L1PA10 LINE L1 -6 6162 5490 1919 178 0 6 chr1 130135721 130136035 -112528318 - AluSx SINE Alu 0 312 1 5508 93 11 26 chr1 130136035 130136197 -112528156 - L1PA10 LINE L1 -678 5490 5327 265 307 47 143 chr1 130136221 130136563 -112527790 + L2 LINE L2 2946 3254 -18 244 278 0 0 chr1 130138054 130138108 -112526245 - L2 LINE L2 0 3272 3219 22 35 0 0 chr1 130139358 130139387 -112524966 + AT_rich Low_complexity Low_complexity 1 29 0 220 291 47 47 chr1 130139740 130139826 -112524527 - MIR3 SINE MIR -117 91 6 442 274 220 4 chr1 130140640 130140881 -112523472 - L2 LINE L2 -157 3156 2864 385 291 45 0 chr1 130141399 130141509 -112522844 - MIR SINE MIR -121 141 27 234 0 0 0 chr1 130142182 130142208 -112522145 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2290 108 0 0 chr1 130142736 130143066 -112521287 + AluSg SINE Alu 1 330 0 378 236 11 22 chr1 130143672 130143854 -112520499 + (TG)n Simple_repeat Simple_repeat 1 180 0 221 261 0 0 chr1 130144269 130144315 -112520038 + L2 LINE L2 3185 3230 -83 328 221 13 0 chr1 130146367 130146444 -112517909 - MER116 DNA Mariner 0 80 3 717 268 24 0 chr1 130147643 130147807 -112516546 - MIR SINE MIR -94 168 1 397 355 39 26 chr1 130148482 130148713 -112515640 + L2 LINE L2 2841 3074 -198 195 336 104 24 chr1 130150146 130150271 -112514082 - L2 LINE L2 0 3272 3138 1730 181 99 11 chr1 130151137 130151501 -112512852 + MSTD LTR MaLR 1 396 0 618 283 137 9 chr1 130154385 130154611 -112509742 + MIR SINE MIR 8 262 0 191 306 73 48 chr1 130154890 130155014 -112509339 + MIR SINE MIR 21 147 -61 349 235 10 41 chr1 130155204 130155302 -112509051 + L2 LINE L2 3201 3295 -18 1408 141 45 0 chr1 130156416 130156636 -112507717 + MER30 DNA MER1_type 1 230 0 185 242 0 0 chr1 130156978 130157011 -112507342 - L3 LINE CR1 -110 1467 1435 207 189 0 0 chr1 130157156 130157193 -112507160 + MIR SINE MIR 112 148 -114 218 316 104 69 chr1 130157978 130158266 -112506087 + L2 LINE L2 2543 2840 -474 * 297 213 306 0 chr1 130158243 130158351 -112506002 + MIR SINE MIR 112 252 -10 428 301 80 54 chr1 130158380 130158619 -112505734 + L2 LINE L2 2824 3068 -204 1232 88 0 6 chr1 130158987 130159079 -112505274 + (TTTC)n Simple_repeat Simple_repeat 1 271 0 1232 88 0 6 chr1 130159079 130159260 -112505093 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2052 143 3 19 chr1 130159351 130159666 -112504687 - AluSx SINE Alu -2 310 1 693 323 105 12 chr1 130160679 130161097 -112503256 - MLT1K LTR MaLR 0 588 132 827 157 16 0 chr1 130162681 130162802 -112501551 + FLAM_C SINE Alu 1 123 -20 284 306 98 46 chr1 130162824 130162997 -112501356 - MIR SINE MIR -29 233 52 181 282 75 98 chr1 130164307 130164481 -112499872 - MIR3 SINE MIR -26 182 13 2223 108 14 0 chr1 130164929 130165224 -112499129 - AluSq SINE Alu -14 299 1 979 168 78 0 chr1 130165786 130165953 -112498400 + MER5A DNA MER1_type 9 188 -1 409 236 130 43 chr1 130165993 130166154 -112498199 - MER5B DNA MER1_type -3 175 1 498 260 24 16 chr1 130166154 130166281 -112498072 - MIR3 SINE MIR -48 160 33 189 0 0 0 chr1 130166882 130166903 -112497450 + (TG)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr1 130167991 130168011 -112496342 + (T)n Simple_repeat Simple_repeat 1 20 0 209 172 30 40 chr1 130168229 130168328 -112496025 + (CATA)n Simple_repeat Simple_repeat 4 101 0 211 243 14 29 chr1 130168619 130168689 -112495664 + GA-rich Low_complexity Low_complexity 3 71 0 266 389 60 12 chr1 130169648 130169815 -112494538 - MIR SINE MIR -54 208 34 355 262 71 28 chr1 130169878 130170019 -112494334 - MIR SINE MIR -26 236 90 316 326 68 50 chr1 130170283 130170490 -112493863 - MIR SINE MIR -50 212 5 248 351 0 0 chr1 130171295 130171372 -112492981 + L2 LINE L2 3226 3302 -11 651 270 63 42 chr1 130172157 130172442 -112491911 - L2 LINE L2 -4 3309 3019 575 312 84 0 chr1 130172965 130173172 -112491181 - MIR SINE MIR -6 256 34 984 276 107 13 chr1 130174142 130174526 -112489827 - MLT1J2 LTR MaLR -28 422 3 202 378 44 0 chr1 130174597 130174687 -112489666 + MIR SINE MIR 49 142 -66 498 227 111 57 chr1 130174778 130174971 -112489382 - MIR SINE MIR -3 259 52 232 352 51 64 chr1 130176456 130176692 -112487661 - L2 LINE L2 -13 3259 3027 474 296 95 17 chr1 130178593 130178772 -112485581 + MIR3 SINE MIR 5 197 -11 2428 88 0 0 chr1 130179711 130180006 -112484347 - AluY SINE Alu -16 295 1 306 0 0 0 chr1 130180058 130180092 -112484261 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 802 158 8 8 chr1 130180115 130180248 -112484105 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr1 130180262 130180286 -112484067 + AT_rich Low_complexity Low_complexity 1 24 0 482 263 101 39 chr1 130181055 130181234 -112483119 + Charlie8 DNA MER1_type 90 279 -2138 464 216 47 108 chr1 130181465 130181613 -112482740 - MIR SINE MIR -109 153 15 294 255 109 33 chr1 130182261 130182456 -112481897 + MIR3 SINE MIR 9 254 -8 734 351 88 42 chr1 130182640 130183560 -112480793 + L3 LINE CR1 70 1031 -546 211 315 0 0 chr1 130183587 130183641 -112480712 + (TGG)n Simple_repeat Simple_repeat 1 54 0 432 302 151 15 chr1 130183730 130183935 -112480418 - MLT1J2 LTR MaLR -33 417 185 472 263 45 19 chr1 130184087 130184243 -112480110 - MLT1J2 LTR MaLR -288 162 3 239 303 0 0 chr1 130184264 130184340 -112480013 - MIR SINE MIR -63 199 124 196 259 12 35 chr1 130184482 130184567 -112479786 + L3 LINE CR1 1188 1270 -307 2395 167 58 10 chr1 130184652 130185065 -112479288 + L1PA15 LINE L1 5733 6165 0 192 286 95 0 chr1 130185072 130185135 -112479218 + L3 LINE CR1 1453 1521 -56 24 67 0 0 chr1 130185380 130185425 -112478928 + AT_rich Low_complexity Low_complexity 1 45 0 24 77 0 0 chr1 130185785 130185837 -112478516 + AT_rich Low_complexity Low_complexity 1 52 0 334 369 2 0 chr1 130186182 130186320 -112478033 + MIR SINE MIR 29 167 -63 204 245 0 20 chr1 130186373 130186422 -112477931 + CT-rich Low_complexity Low_complexity 3 50 0 1073 231 117 35 chr1 130186795 130187224 -112477129 + LTR16B LTR ERVL 1 464 0 410 258 10 3 chr1 130187408 130187518 -112476835 - MIR SINE MIR -67 141 36 524 242 70 0 chr1 130187665 130187793 -112476560 - MER45A DNA AcHobo 0 178 42 3500 89 125 16 chr1 130188868 130189420 -112474933 + LTR10E LTR ERV1 1 612 -21 215 191 24 0 chr1 130189744 130189786 -112474567 - L3b LINE CR1 -247 1336 1294 1932 124 22 4 chr1 130189877 130190177 -112474176 - AluSp SINE Alu 0 307 3 25 0 0 0 chr1 130190188 130190213 -112474140 + AT_rich Low_complexity Low_complexity 1 25 0 468 230 65 14 chr1 130191604 130191743 -112472610 + MER103 DNA DNA 8 153 -13 280 239 15 0 chr1 130191831 130191898 -112472455 + MER94 DNA DNA 1 68 -66 379 252 98 8 chr1 130191924 130192047 -112472306 + MER94 DNA DNA 1 134 0 275 316 15 44 chr1 130192919 130193055 -112471298 - L2 LINE L2 -575 2739 2608 359 277 31 37 chr1 130193198 130193378 -112470975 - MIR SINE MIR -56 206 30 1658 222 77 18 chr1 130193601 130193993 -112470360 + MLT1C LTR MaLR 53 467 0 571 154 112 7 chr1 130194008 130194151 -112470202 - MER33 DNA MER1_type -1 323 166 509 100 0 0 chr1 130194151 130194221 -112470132 + L1MA7 LINE L1 6163 6232 -59 44096 30 21 1 chr1 130194236 130200265 -112464088 - L1HS LINE L1 -2 6153 2 453 108 0 0 chr1 130200265 130200339 -112464014 + L1MA7 LINE L1 6218 6291 0 767 191 58 6 chr1 130200341 130200514 -112463839 - MER33 DNA MER1_type -141 183 2 647 65 22 0 chr1 130200523 130200615 -112463738 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 2325 117 0 0 chr1 130200617 130200925 -112463428 - AluSg SINE Alu -2 308 1 218 242 65 32 chr1 130202678 130202740 -112461613 - MER91C DNA MER1_type -44 96 33 257 377 57 0 chr1 130203800 130203922 -112460431 + L2 LINE L2 3138 3266 -6 845 225 55 71 chr1 130204422 130204651 -112459702 - MIR SINE MIR -1 261 35 2431 76 0 0 chr1 130204651 130204942 -112459411 - AluSg SINE Alu -19 291 1 845 225 55 71 chr1 130204942 130204965 -112459388 - MIR SINE MIR -227 35 13 208 167 0 74 chr1 130205183 130205237 -112459116 + L2 LINE L2 3263 3312 -1 273 327 37 9 chr1 130205572 130205679 -112458674 + L2 LINE L2 3154 3263 -9 206 151 57 0 chr1 130206298 130206351 -112458002 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 2937 133 7 16 chr1 130206586 130207039 -112457314 + L1MA9 LINE L1 5864 6312 0 2235 116 53 47 chr1 130207046 130207155 -112457198 + THE1B LTR MaLR 1 108 -256 2338 108 0 3 chr1 130207155 130207469 -112456884 - AluSp SINE Alu 0 313 1 2235 116 53 47 chr1 130207469 130207720 -112456633 + THE1B LTR MaLR 108 363 -1 183 80 0 0 chr1 130208501 130208526 -112455827 + (TTTTTA)n Simple_repeat Simple_repeat 5 29 0 580 245 125 29 chr1 130209062 130209270 -112455083 - MIR SINE MIR -13 249 22 514 238 102 14 chr1 130209274 130209421 -112454932 - MER63A DNA MER1_type -2 208 49 635 292 85 70 chr1 130210523 130211029 -112453324 - L2 LINE L2 0 3272 2751 1010 226 86 104 chr1 130211030 130211071 -112453282 - MLT2B1 LTR ERVL 0 520 480 405 0 0 0 chr1 130211071 130211116 -112453237 + (TG)n Simple_repeat Simple_repeat 2 46 0 1010 226 86 104 chr1 130211116 130211477 -112452876 - MLT2B1 LTR ERVL -40 480 126 1769 169 42 56 chr1 130211477 130211781 -112452572 + MLT1A1 LTR MaLR 1 301 -64 358 202 12 0 chr1 130211781 130211865 -112452488 - L1PA16 LINE L1 -11 6155 6071 1769 169 42 56 chr1 130211865 130211915 -112452438 + MLT1A1 LTR MaLR 301 350 -15 569 203 0 43 chr1 130211922 130212060 -112452293 - MLT2B2 LTR ERVL -383 132 1 897 328 40 21 chr1 130212060 130212360 -112451993 - L2 LINE L2 -560 2754 2442 2019 135 123 12 chr1 130212360 130212686 -112451667 + THE1B LTR MaLR 3 364 0 897 328 40 21 chr1 130212686 130212806 -112451547 - L2 LINE L2 -872 2442 2326 523 245 82 31 chr1 130213161 130213357 -112450996 - MIR SINE MIR 0 262 57 393 286 48 27 chr1 130213486 130213633 -112450720 + MER5A DNA MER1_type 18 167 -22 356 286 38 9 chr1 130214282 130214387 -112449966 + MER81 DNA DNA 7 114 0 44725 43 2 1 chr1 130215034 130221179 -112443174 - L1PA3 LINE L1 0 6155 8 192 303 45 0 chr1 130222358 130222424 -112441929 - L2 LINE L2 -62 3251 3183 250 335 86 13 chr1 130222632 130222784 -112441569 - MIR SINE MIR -1 261 99 1825 103 4 0 chr1 130222785 130223027 -112441326 + AluSg SINE Alu 1 243 -67 281 117 107 0 chr1 130223046 130223119 -112441234 + Alu SINE Alu 244 300 0 234 0 0 0 chr1 130224600 130224626 -112439727 + (CA)n Simple_repeat Simple_repeat 2 27 0 216 67 0 0 chr1 130224626 130224656 -112439697 + (TC)n Simple_repeat Simple_repeat 1 30 0 494 244 36 107 chr1 130225840 130226021 -112438332 + MER63A DNA MER1_type 2 167 -1521 1952 105 4 0 chr1 130226021 130226319 -112438034 + AluSg SINE Alu 23 321 0 494 244 36 107 chr1 130226319 130226361 -112437992 + MER63A DNA MER1_type 167 210 0 337 260 35 81 chr1 130226392 130226619 -112437734 + MLT1I LTR MaLR 70 272 -137 246 296 37 0 chr1 130226664 130226745 -112437608 + MLT1I LTR MaLR 283 366 -43 543 338 43 51 chr1 130226838 130227211 -112437142 - L3 LINE CR1 -3 1574 1205 284 221 44 71 chr1 130227212 130227325 -112437028 + HAL1 LINE L1 1548 1657 -850 488 191 35 75 chr1 130227552 130227751 -112436602 + L1MEd LINE L1 1000 1190 -4929 229 239 73 28 chr1 130228495 130228604 -112435749 + L1ME4a LINE L1 5969 6082 -39 201 175 0 53 chr1 130228696 130228753 -112435600 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 233 217 0 33 chr1 130228887 130228947 -112435406 + L1MC4a LINE L1 5600 5657 -464 371 285 60 55 chr1 130228954 130229189 -112435164 + L1MC4a LINE L1 5694 5929 -1879 3121 30 3 0 chr1 130229405 130229769 -112434584 + L1PA4 LINE L1 5692 6056 -99 491 215 110 34 chr1 130229911 130230147 -112434206 + Charlie2 DNA MER1_type 2385 2638 -224 28 0 0 0 chr1 130230148 130230176 -112434177 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr1 130231886 130231928 -112432425 + AT_rich Low_complexity Low_complexity 1 42 0 5050 162 35 21 chr1 130231979 130232759 -112431594 - L1PA16 LINE L1 -37 6129 5362 2243 88 0 41 chr1 130232759 130233076 -112431277 - AluY SINE Alu -5 306 3 5050 162 35 21 chr1 130233076 130233812 -112430541 - L1PA16 LINE L1 -804 5362 4576 40 0 0 0 chr1 130237452 130237492 -112426861 + AT_rich Low_complexity Low_complexity 1 40 0 1547 189 7 21 chr1 130237492 130237777 -112426576 - AluJb SINE Alu -27 285 5 269 220 20 0 chr1 130238226 130238276 -112426077 + L2 LINE L2 3210 3260 -12 2232 111 0 0 chr1 130238382 130238670 -112425683 - AluSq SINE Alu -25 288 1 348 237 167 9 chr1 130239169 130239283 -112425070 - L2 LINE L2 0 3313 3182 1673 203 0 7 chr1 130240335 130240626 -112423727 - AluJb SINE Alu -23 289 1 1866 249 61 24 chr1 130241233 130241740 -112422613 + MLT1F LTR MaLR 1 526 -16 388 338 86 7 chr1 130242290 130242441 -112421912 + MLT1E LTR MaLR 1 163 -430 324 219 84 126 chr1 130242456 130242575 -112421778 + MLT1F1 LTR MaLR 136 249 -293 1073 230 48 8 chr1 130242798 130243046 -112421307 + MLT1F1 LTR MaLR 308 565 -2 2493 65 0 10 chr1 130244147 130244453 -112419900 + AluY SINE Alu 1 303 -8 3369 55 0 16 chr1 130244632 130245067 -112419286 + L1PA5 LINE L1 5727 6154 0 221 188 0 21 chr1 130246078 130246126 -112418227 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1100 223 70 0 chr1 130246185 130246486 -112417867 - MER33 DNA MER1_type -1 323 2 226 288 0 0 chr1 130247299 130247358 -112416995 + (CATCT)n Simple_repeat Simple_repeat 4 62 0 517 206 119 24 chr1 130247678 130247804 -112416549 + MLT1J2 LTR MaLR 313 450 0 5414 161 11 28 chr1 130248226 130249105 -112415248 - L1PA16 LINE L1 -16 6150 5297 2205 111 35 9 chr1 130249105 130249449 -112414904 - THE1A LTR MaLR 0 355 3 5414 161 11 28 chr1 130249449 130249965 -112414388 - L1PA16 LINE L1 -869 5297 4774 243 0 0 0 chr1 130250338 130250365 -112413988 + (TG)n Simple_repeat Simple_repeat 2 28 0 29 28 0 0 chr1 130250639 130250675 -112413678 + AT_rich Low_complexity Low_complexity 1 36 0 4723 176 37 39 chr1 130251380 130252648 -112411705 - L1MA10 LINE L1 -7 7029 5756 1564 184 14 0 chr1 130253958 130254252 -112410101 + L1PA16 LINE L1 5866 6163 -3 28 0 0 0 chr1 130255046 130255074 -112409279 + AT_rich Low_complexity Low_complexity 1 28 0 957 218 44 0 chr1 130255406 130255612 -112408741 - MER20 DNA MER1_type -4 215 1 1211 182 4 26 chr1 130256024 130256255 -112408098 + AluJb SINE Alu 81 306 -6 2316 90 0 10 chr1 130258345 130258645 -112405708 - AluSg SINE Alu -11 299 3 542 248 87 31 chr1 130258989 130259150 -112405203 + MIR SINE MIR 93 262 0 4656 194 31 35 chr1 130259460 130261171 -112403182 - L1MA10 LINE L1 -2865 3983 2277 2105 119 0 3 chr1 130261171 130261466 -112402887 - AluY SINE Alu -17 294 1 4656 194 31 35 chr1 130261466 130261599 -112402754 - L1MA10 LINE L1 -4571 2277 2145 573 290 75 14 chr1 130262560 130262839 -112401514 - LTR16A1 LTR ERVL -2 455 160 236 238 32 16 chr1 130262997 130263060 -112401293 + MIR3 SINE MIR 109 172 -36 3837 188 151 66 chr1 130263707 130264015 -112400338 - Charlie1a DNA MER1_type -1306 1455 1175 4401 144 57 5 chr1 130264015 130264839 -112399514 - L1MA4 LINE L1 -5 6295 5429 3837 188 151 66 chr1 130264839 130265871 -112398482 - Charlie1a DNA MER1_type -1586 1175 1 461 327 85 42 chr1 130266409 130266819 -112397534 + L1 LINE L1 2119 2546 -3600 396 0 0 0 chr1 130266904 130266948 -112397405 + (TA)n Simple_repeat Simple_repeat 1 44 0 485 221 159 0 chr1 130267061 130267206 -112397147 - MIR SINE MIR -1 261 94 282 319 97 9 chr1 130267475 130267691 -112396662 + L1MC4a LINE L1 5686 5920 -1888 626 270 35 10 chr1 130267994 130268203 -112396150 - L1M2 LINE L1 -582 5709 5493 31 92 0 0 chr1 130268816 130268903 -112395450 + AT_rich Low_complexity Low_complexity 1 87 0 267 276 267 0 chr1 130268954 130269070 -112395283 - L2 LINE L2 -5 3267 3121 218 282 122 23 chr1 130269123 130269254 -112395099 + L2 LINE L2 2671 2814 -500 3216 34 0 0 chr1 130271776 130272157 -112392196 - L1PA3 LINE L1 0 6155 5775 4460 18 2 0 chr1 130272157 130272773 -112391580 + L1PA3 LINE L1 5160 5776 -379 254 349 0 0 chr1 130272944 130273030 -112391323 - MLT1I LTR MaLR -239 170 85 327 286 92 53 chr1 130273182 130273706 -112390647 - L1MEd LINE L1 -2703 3426 2883 358 319 54 17 chr1 130273751 130274161 -112390192 - L1MEd LINE L1 -3518 2611 2187 637 287 118 37 chr1 130274359 130274739 -112389614 - L1MEd LINE L1 -5703 416 6 208 317 0 0 chr1 130275831 130275891 -112388462 - L2 LINE L2 0 3313 3254 1348 233 16 27 chr1 130275922 130276287 -112388066 - L1PB4 LINE L1 -2 6154 5794 431 148 40 51 chr1 130276294 130276470 -112387883 + (TTATA)n Simple_repeat Simple_repeat 5 178 0 40 49 0 0 chr1 130276470 130276531 -112387822 + AT_rich Low_complexity Low_complexity 1 61 0 1872 137 9 48 chr1 130276598 130276872 -112387481 - L1PB4 LINE L1 -514 5789 5529 2068 121 0 16 chr1 130276872 130277178 -112387175 + AluSg SINE Alu 1 301 -9 1872 137 9 48 chr1 130277178 130277239 -112387114 - L1PB4 LINE L1 -774 5529 5467 7874 195 27 35 chr1 130277388 130279226 -112385127 + L1 LINE L1 2434 4255 -1891 1388 189 64 20 chr1 130279228 130279524 -112384829 + AluJo SINE Alu 1 309 -3 2780 179 29 0 chr1 130279660 130280146 -112384207 - MLT2B3 LTR ERVL -53 501 2 2367 65 0 23 chr1 130280146 130280452 -112383901 + AluY SINE Alu 1 299 -12 630 290 52 39 chr1 130280869 130280926 -112383427 - MIR SINE MIR -1 261 206 890 197 38 6 chr1 130280926 130281109 -112383244 + MER5A DNA MER1_type 1 189 0 630 290 52 39 chr1 130281109 130281282 -112383071 - MIR SINE MIR -56 206 28 259 266 113 16 chr1 130281357 130281481 -112382872 - MER3 DNA MER1_type -46 163 28 324 316 139 6 chr1 130281669 130281827 -112382526 - MIR SINE MIR -9 253 75 273 207 12 37 chr1 130282799 130282881 -112381472 + MER116 DNA Mariner 1 80 0 257 314 161 8 chr1 130282884 130283002 -112381351 - L2 LINE L2 -4 3268 3133 195 278 56 28 chr1 130283005 130283077 -112381276 - MIR3 SINE MIR -125 83 10 23 0 0 0 chr1 130283141 130283164 -112381189 + AT_rich Low_complexity Low_complexity 1 23 0 40027 38 25 2 chr1 130283920 130289937 -112374416 - L1PA3 LINE L1 0 6155 1 739 235 147 70 chr1 130290800 130290853 -112373500 + MLT1J LTR MaLR 1 49 -462 4174 162 60 8 chr1 130290853 130291638 -112372715 - LTR1B LTR ERV1 0 826 1 739 235 147 70 chr1 130291638 130292027 -112372326 + MLT1J LTR MaLR 49 477 -34 813 250 22 0 chr1 130292166 130292350 -112372003 + MER5A DNA MER1_type 2 189 0 2761 16 3 0 chr1 130294097 130294407 -112369946 + AluY SINE Alu 1 311 0 7140 249 107 26 chr1 130294752 130294961 -112369392 - L2 LINE L2 -6 3307 3116 1902 182 34 13 chr1 130294961 130295341 -112369012 + MLT1B LTR MaLR 3 390 0 7140 249 107 26 chr1 130295341 130296060 -112368293 - L2 LINE L2 -197 3116 2457 1621 191 6 31 chr1 130296060 130296379 -112367974 + AluJb SINE Alu 1 311 -1 7140 249 107 26 chr1 130296379 130296925 -112367428 - L2 LINE L2 -856 2457 1957 1418 213 57 63 chr1 130296925 130297385 -112366968 - MSTB2 LTR MaLR 0 457 1 7140 249 107 26 chr1 130297385 130298552 -112365801 - L2 LINE L2 -1356 1957 441 472 191 121 32 chr1 130299285 130299442 -112364911 - MARNA DNA Mariner -398 188 18 399 272 57 19 chr1 130299854 130300012 -112364341 - MIR SINE MIR -49 213 50 27 49 0 0 chr1 130301480 130301521 -112362832 + AT_rich Low_complexity Low_complexity 1 41 0 2452 137 0 0 chr1 130301531 130301897 -112362456 - MER47A DNA MER2_type 0 366 1 399 272 57 19 chr1 130303103 130303261 -112361092 - MIR SINE MIR -49 213 50 212 302 121 26 chr1 130303576 130303692 -112360661 + MIR SINE MIR 42 168 -94 1761 141 17 17 chr1 130304743 130305042 -112359311 + AluSp SINE Alu 13 311 -2 199 333 0 0 chr1 130306365 130306425 -112357928 - L2 LINE L2 -8 3305 3246 621 354 124 0 chr1 130306513 130306844 -112357509 + L2 LINE L2 2384 2755 -559 2183 116 0 3 chr1 130307482 130307783 -112356570 - AluSx SINE Alu -9 303 4 465 269 43 7 chr1 130307891 130308032 -112356321 + MIR SINE MIR 106 251 -11 219 218 0 0 chr1 130308136 130308191 -112356162 + (TATG)n Simple_repeat Simple_repeat 2 56 0 222 160 0 0 chr1 130308229 130308279 -112356074 + GA-rich Low_complexity Low_complexity 2 51 0 208 212 0 0 chr1 130308880 130308913 -112355440 + MIR SINE MIR 47 79 -183 210 388 92 0 chr1 130309028 130309126 -112355227 + MIR3 SINE MIR 73 179 -29 612 193 118 0 chr1 130309296 130309415 -112354938 - FLAM_A SINE Alu 0 133 1 206 245 181 32 chr1 130309516 130309610 -112354743 - MIR SINE MIR -36 226 119 850 154 47 12 chr1 130310352 130310521 -112353832 - MER3 DNA MER1_type -81 128 1 885 249 53 8 chr1 130310597 130310842 -112353511 + MIR SINE MIR 5 260 -2 23 0 0 0 chr1 130311404 130311427 -112352926 + AT_rich Low_complexity Low_complexity 1 23 0 282 205 141 13 chr1 130312606 130312684 -112351669 - MIR SINE MIR -7 255 168 259 241 81 35 chr1 130312824 130312911 -112351442 + L2 LINE L2 3168 3258 -55 1937 161 52 0 chr1 130313329 130313676 -112350677 - MLT1A1 LTR MaLR 0 365 1 250 409 88 11 chr1 130314618 130314799 -112349554 - L3 LINE CR1 -4 1573 1379 217 220 0 0 chr1 130314800 130314859 -112349494 + (CA)n Simple_repeat Simple_repeat 1 59 0 200 200 25 0 chr1 130315042 130315082 -112349271 + CT-rich Low_complexity Low_complexity 1 41 0 225 65 0 0 chr1 130315082 130315113 -112349240 + (T)n Simple_repeat Simple_repeat 1 31 0 2071 122 0 33 chr1 130315155 130315459 -112348894 - AluSg1 SINE Alu -15 294 1 24 53 0 0 chr1 130316397 130316435 -112347918 + AT_rich Low_complexity Low_complexity 1 38 0 222 273 20 71 chr1 130316736 130316835 -112347518 + L2 LINE L2 3213 3306 -7 328 246 54 23 chr1 130316861 130316991 -112347362 - L2 LINE L2 -1379 1935 1802 755 232 174 13 chr1 130317001 130317225 -112347128 + MIR SINE MIR 3 262 0 768 126 0 16 chr1 130317247 130317374 -112346979 - L1MD2 LINE L1 -17 6342 6218 1489 161 68 68 chr1 130317423 130317587 -112346766 + LTR1 LTR ERV1 31 194 -591 2024 106 10 30 chr1 130317587 130317888 -112346465 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr1 130317892 130317913 -112346440 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1489 161 68 68 chr1 130317913 130318123 -112346230 + LTR1 LTR ERV1 196 410 -375 3388 265 40 15 chr1 130318123 130319359 -112344994 + L2 LINE L2 2044 3313 0 326 332 62 62 chr1 130319392 130319714 -112344639 + L1MC4a LINE L1 5770 6091 -1717 4823 111 8 15 chr1 130319831 130320564 -112343789 - L1PA13 LINE L1 -2 6161 5434 2145 104 34 7 chr1 130320566 130320863 -112343490 - AluSx SINE Alu -7 305 1 34 24 0 0 chr1 130320894 130320935 -112343418 + AT_rich Low_complexity Low_complexity 1 41 0 776 281 35 47 chr1 130321501 130321843 -112342510 - MLT1I LTR MaLR 0 409 72 496 229 0 0 chr1 130321904 130322009 -112342344 + MER58B DNA MER1_type 1 105 -236 248 230 0 14 chr1 130322019 130322093 -112342260 + GA-rich Low_complexity Low_complexity 2 74 0 339 226 24 24 chr1 130322106 130322190 -112342163 + MER58B DNA MER1_type 258 341 0 553 217 8 15 chr1 130322421 130322567 -112341786 + L1MB2 LINE L1 5140 5286 -860 1480 162 20 57 chr1 130322567 130322863 -112341490 + AluJo SINE Alu 1 285 -27 553 217 8 15 chr1 130322863 130322875 -112341478 + L1MB2 LINE L1 5286 5297 -849 58 54 0 0 chr1 130322875 130322968 -112341385 + AT_rich Low_complexity Low_complexity 1 93 0 4396 161 17 24 chr1 130322968 130323848 -112340505 + L1MB2 LINE L1 5270 6143 -28 300 351 46 0 chr1 130323980 130324131 -112340222 - L2 LINE L2 -925 2389 2232 1864 142 0 86 chr1 130324134 130324472 -112339881 + AluSx SINE Alu 1 309 -3 300 220 10 20 chr1 130324476 130324576 -112339777 + GA-rich Low_complexity Low_complexity 2 100 0 1873 117 3 80 chr1 130324815 130325140 -112339213 - AluJb SINE Alu -12 300 1 21 57 0 0 chr1 130325253 130325288 -112339065 + AT_rich Low_complexity Low_complexity 1 35 0 216 24 48 24 chr1 130325333 130325375 -112338978 + (TA)n Simple_repeat Simple_repeat 1 43 0 1143 207 95 0 chr1 130325390 130325949 -112338404 - L1ME2 LINE L1 -11 6153 5361 2059 116 3 0 chr1 130325963 130326247 -112338106 - AluSg SINE Alu -25 285 1 2381 219 55 35 chr1 130326360 130326428 -112337925 - L1ME2 LINE L1 -772 5374 5309 2156 128 3 0 chr1 130326428 130326733 -112337620 + AluSx SINE Alu 1 306 -6 2381 219 55 35 chr1 130326733 130327228 -112337125 - L1ME2 LINE L1 -837 5309 4826 7753 14 9 0 chr1 130327228 130328442 -112335911 - L1PA2 LINE L1 -1 6154 4938 2381 219 55 35 chr1 130328442 130328679 -112335674 - L1ME2 LINE L1 -1320 4826 4553 2355 94 6 9 chr1 130328679 130329021 -112335332 + L1PA13 LINE L1 5814 6154 -9 2381 219 55 35 chr1 130329021 130329051 -112335302 - L1ME2 LINE L1 -1593 4553 4525 2035 298 33 35 chr1 130329062 130329096 -112335257 + L1ME LINE L1 2 35 -6035 1207 204 54 49 chr1 130329096 130329483 -112334870 - MLT1B LTR MaLR -1 389 1 2035 298 33 35 chr1 130329483 130330482 -112333871 + L1ME LINE L1 35 1033 -5037 393 194 136 32 chr1 130330892 130331047 -112333306 - MARNA DNA Mariner -398 188 18 219 286 110 22 chr1 130332066 130332157 -112332196 - L2 LINE L2 -37 3235 3137 192 341 0 37 chr1 130332308 130332390 -112331963 - L2 LINE L2 -3 3269 3191 180 0 0 0 chr1 130332567 130332587 -112331766 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr1 130334066 130334089 -112330264 + GC_rich Low_complexity Low_complexity 1 23 0 1001 136 78 53 chr1 130336459 130336702 -112327651 + L1MA8 LINE L1 6037 6285 -6 204 302 0 0 chr1 130336820 130336883 -112327470 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 263 121 17 0 chr1 130337308 130337366 -112326987 + (CA)n Simple_repeat Simple_repeat 2 60 0 243 302 0 0 chr1 130337378 130337441 -112326912 + L2 LINE L2 3251 3313 0 2282 112 0 0 chr1 130338291 130338594 -112325759 - AluSq SINE Alu -10 303 1 253 181 14 56 chr1 130338754 130338826 -112325527 + CT-rich Low_complexity Low_complexity 5 73 0 183 42 0 0 chr1 130338955 130338979 -112325374 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 229 277 52 39 chr1 130389910 130390065 -112274288 - L1ME LINE L1 -712 5458 5302 354 297 113 0 chr1 130390078 130390273 -112274080 - L1ME LINE L1 -870 5276 5060 207 0 0 0 chr1 130390277 130390300 -112274053 + (TG)n Simple_repeat Simple_repeat 1 23 0 234 268 0 0 chr1 130390300 130390356 -112273997 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 806 265 70 39 chr1 130390380 130390792 -112273561 - L1ME LINE L1 -1109 5037 4613 390 222 0 11 chr1 130390851 130390941 -112273412 - L1ME LINE L1 -1537 4609 4521 21 36 0 0 chr1 130393032 130393060 -112271293 + AT_rich Low_complexity Low_complexity 1 28 0 248 354 109 0 chr1 130393927 130394074 -112270279 - MIR SINE MIR -98 164 2 222 273 47 62 chr1 130394128 130394243 -112270110 - MIR SINE MIR -59 149 38 960 207 84 106 chr1 130394272 130394420 -112269933 + MSTD LTR MaLR 1 151 -245 2144 113 0 0 chr1 130394420 130394702 -112269651 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr1 130394705 130394728 -112269625 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 960 207 84 106 chr1 130394728 130394980 -112269373 + MSTD LTR MaLR 153 396 0 981 138 66 0 chr1 130395499 130395666 -112268687 - AluJo SINE Alu -16 296 119 1508 126 11 30 chr1 130395666 130395929 -112268424 + L1MB5 LINE L1 5909 6166 -8 210 263 0 0 chr1 130397005 130397062 -112267291 + T-rich Low_complexity Low_complexity 1 57 0 832 196 0 7 chr1 130397578 130397721 -112266632 - AluJo SINE Alu -170 142 1 385 348 43 7 chr1 130398732 130398870 -112265483 + L2 LINE L2 3122 3264 -8 808 155 14 140 chr1 130399446 130399653 -112264700 + MER5A DNA MER1_type 1 181 -8 1093 136 17 6 chr1 130399760 130399936 -112264417 - MER5B DNA MER1_type 0 178 1 297 0 0 0 chr1 130399997 130400030 -112264323 + (CA)n Simple_repeat Simple_repeat 2 34 0 396 220 328 11 chr1 130401002 130401179 -112263174 + MIR SINE MIR 15 247 -15 248 246 78 84 chr1 130401214 130401323 -112263030 + L1ME LINE L1 5617 5726 -395 2773 79 42 0 chr1 130401323 130401703 -112262650 + L1PA11 LINE L1 5779 6174 0 248 246 78 84 chr1 130401703 130401784 -112262569 + L1ME LINE L1 5726 5806 -315 261 331 141 7 chr1 130401825 130401967 -112262386 + MIR SINE MIR 4 164 -98 1690 150 6 76 chr1 130402152 130402466 -112261887 + AluJo SINE Alu 1 292 -20 346 308 64 32 chr1 130402655 130402811 -112261542 + MIR SINE MIR 1 161 -101 * 806 237 121 10 chr1 130402800 130403007 -112261346 - MIR SINE MIR 0 262 33 21 36 0 0 chr1 130403099 130403127 -112261226 + AT_rich Low_complexity Low_complexity 1 28 0 227 290 75 75 chr1 130404030 130404216 -112260137 + L2 LINE L2 2330 2515 -799 * 871 256 63 0 chr1 130404191 130404398 -112259955 + MIR SINE MIR 39 258 -4 184 348 34 22 chr1 130404456 130404545 -112259808 + L2 LINE L2 2564 2653 -661 190 270 40 27 chr1 130404577 130404651 -112259702 + L2 LINE L2 2742 2816 -498 1691 191 112 9 chr1 130404925 130405344 -112259009 + MLT1C LTR MaLR 1 462 -5 933 237 18 14 chr1 130406126 130406405 -112257948 - L1MA9 LINE L1 -38 6274 5995 2163 76 7 36 chr1 130406991 130407292 -112257061 - AluSg SINE Alu -18 292 1 24 0 0 0 chr1 130408014 130408038 -112256315 + AT_rich Low_complexity Low_complexity 1 24 0 319 179 0 24 chr1 130408278 130408362 -112255991 + L1MA6 LINE L1 6219 6300 0 2193 246 20 45 chr1 130408801 130409113 -112255240 + L2 LINE L2 2241 2532 -782 2202 113 10 13 chr1 130409113 130409398 -112254955 + AluSx SINE Alu 1 286 -26 294 73 0 0 chr1 130409398 130409439 -112254914 + (AAATG)n Simple_repeat Simple_repeat 2 42 0 2202 113 10 13 chr1 130409439 130409455 -112254898 + AluSx SINE Alu 286 301 -11 2193 246 20 45 chr1 130409455 130409740 -112254613 + L2 LINE L2 2532 2823 -491 580 217 130 77 chr1 130409803 130410010 -112254343 + MIR SINE MIR 40 257 -5 1064 269 119 22 chr1 130410018 130410430 -112253923 + L2 LINE L2 2862 3313 0 446 339 115 46 chr1 130410614 130411260 -112253093 + L2 LINE L2 569 1258 -2056 341 231 25 66 chr1 130411288 130411409 -112252944 - MIR SINE MIR -21 241 126 1804 113 24 34 chr1 130412591 130412883 -112251470 - AluSx SINE Alu -3 309 21 629 114 15 4 chr1 130413650 130413751 -112250602 + MLT1A1 LTR MaLR 12 100 -265 902 138 20 0 chr1 130413765 130413917 -112250436 + MLT1A1 LTR MaLR 211 365 0 1830 177 0 19 chr1 130413958 130414274 -112250079 + AluJo SINE Alu 1 310 -2 209 178 44 0 chr1 130415254 130415299 -112249054 - L2 LINE L2 0 3313 3267 255 111 19 19 chr1 130415727 130415781 -112248572 - L1MA10 LINE L1 -2 6332 6279 274 113 0 19 chr1 130415991 130416044 -112248309 - Alu SINE Alu 0 300 249 610 14 0 0 chr1 130416144 130416218 -112248135 - AluY SINE Alu -236 74 1 813 250 22 0 chr1 130417968 130418152 -112246201 - MER5A DNA MER1_type 0 189 2 739 235 147 70 chr1 130418291 130418680 -112245673 - MLT1J LTR MaLR -34 477 49 4174 162 60 8 chr1 130418680 130419465 -112244888 + LTR1B LTR ERV1 1 826 0 739 235 147 70 chr1 130419465 130419518 -112244835 - MLT1J LTR MaLR -462 49 1 39850 38 25 3 chr1 130420381 130426398 -112237955 + L1PA3 LINE L1 1 6155 0 23 0 0 0 chr1 130427154 130427177 -112237176 + AT_rich Low_complexity Low_complexity 1 23 0 195 278 56 28 chr1 130427241 130427313 -112237040 + MIR3 SINE MIR 10 83 -125 257 314 161 8 chr1 130427316 130427434 -112236919 + L2 LINE L2 3133 3268 -4 273 207 12 37 chr1 130427437 130427519 -112236834 - MER116 DNA Mariner 0 80 1 324 316 139 6 chr1 130428491 130428649 -112235704 + MIR SINE MIR 75 253 -9 259 266 113 16 chr1 130428837 130428961 -112235392 + MER3 DNA MER1_type 28 163 -46 630 290 52 39 chr1 130429036 130429209 -112235144 + MIR SINE MIR 28 206 -56 847 196 38 11 chr1 130429209 130429393 -112234960 - MER5A DNA MER1_type 0 189 1 630 290 52 39 chr1 130429393 130429450 -112234903 + MIR SINE MIR 206 261 -1 2367 65 0 23 chr1 130429962 130430268 -112234085 - AluY SINE Alu -12 299 1 2976 176 26 16 chr1 130430268 130430815 -112233538 + MLT2B3 LTR ERVL 2 553 -1 212 302 121 26 chr1 130431481 130431597 -112232756 - MIR SINE MIR -94 168 42 399 272 57 19 chr1 130431912 130432070 -112232283 + MIR SINE MIR 50 213 -49 216 122 0 0 chr1 130433628 130433669 -112230684 + (A)n Simple_repeat Simple_repeat 1 41 0 613 291 71 5 chr1 130434781 130434977 -112229376 + MIR SINE MIR 48 256 -6 485 75 0 12 chr1 130435003 130435083 -112229270 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1386 201 20 0 chr1 130435135 130435379 -112228974 - AluJo SINE Alu -63 249 1 189 0 0 0 chr1 130435389 130435410 -112228943 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr1 130435692 130435721 -112228632 + AT_rich Low_complexity Low_complexity 1 29 0 2452 137 0 0 chr1 130436056 130436422 -112227931 + MER47A DNA MER2_type 1 366 0 27 49 0 0 chr1 130436432 130436473 -112227880 + AT_rich Low_complexity Low_complexity 1 41 0 346 277 220 0 chr1 130437981 130438122 -112226231 + MIR SINE MIR 88 259 -3 1969 128 13 16 chr1 130438549 130438861 -112225492 + AluSp SINE Alu 1 311 -2 199 333 0 0 chr1 130440187 130440247 -112224106 - L2 LINE L2 -8 3305 3246 621 354 124 0 chr1 130440335 130440666 -112223687 + L2 LINE L2 2384 2755 -559 2183 116 0 3 chr1 130441304 130441605 -112222748 - AluSx SINE Alu -9 303 4 465 269 43 7 chr1 130441713 130441854 -112222499 + MIR SINE MIR 106 251 -11 219 218 0 0 chr1 130441958 130442013 -112222340 + (TATG)n Simple_repeat Simple_repeat 2 56 0 222 160 0 0 chr1 130442051 130442101 -112222252 + GA-rich Low_complexity Low_complexity 2 51 0 208 212 0 0 chr1 130442702 130442735 -112221618 + MIR SINE MIR 47 79 -183 210 388 92 0 chr1 130442850 130442948 -112221405 + MIR3 SINE MIR 73 179 -29 612 193 118 0 chr1 130443118 130443237 -112221116 - FLAM_A SINE Alu 0 133 1 206 245 181 32 chr1 130443338 130443432 -112220921 - MIR SINE MIR -36 226 119 850 154 47 12 chr1 130444174 130444343 -112220010 - MER3 DNA MER1_type -81 128 1 885 249 53 8 chr1 130444419 130444664 -112219689 + MIR SINE MIR 5 260 -2 23 0 0 0 chr1 130445226 130445249 -112219104 + AT_rich Low_complexity Low_complexity 1 23 0 282 205 141 13 chr1 130446428 130446506 -112217847 - MIR SINE MIR -7 255 168 259 241 81 35 chr1 130446646 130446733 -112217620 + L2 LINE L2 3168 3258 -55 1937 161 52 0 chr1 130447151 130447498 -112216855 - MLT1A1 LTR MaLR 0 365 1 250 409 88 11 chr1 130448440 130448621 -112215732 - L3 LINE CR1 -4 1573 1379 217 220 0 0 chr1 130448622 130448681 -112215672 + (CA)n Simple_repeat Simple_repeat 1 59 0 189 0 0 0 chr1 130448915 130448936 -112215417 + (T)n Simple_repeat Simple_repeat 1 21 0 2071 122 0 33 chr1 130448978 130449282 -112215071 - AluSg1 SINE Alu -15 294 1 24 53 0 0 chr1 130450221 130450259 -112214094 + AT_rich Low_complexity Low_complexity 1 38 0 222 273 20 71 chr1 130450560 130450659 -112213694 + L2 LINE L2 3213 3306 -7 328 246 54 23 chr1 130450685 130450815 -112213538 - L2 LINE L2 -1379 1935 1802 755 232 174 13 chr1 130450825 130451049 -112213304 + MIR SINE MIR 3 262 0 768 126 0 16 chr1 130451071 130451198 -112213155 - L1MD2 LINE L1 -17 6342 6218 1489 161 68 68 chr1 130451247 130451411 -112212942 + LTR1 LTR ERV1 31 194 -591 2024 106 10 30 chr1 130451411 130451712 -112212641 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr1 130451716 130451737 -112212616 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1489 161 68 68 chr1 130451737 130451947 -112212406 + LTR1 LTR ERV1 196 410 -375 3388 265 40 15 chr1 130451947 130453183 -112211170 + L2 LINE L2 2044 3313 0 326 332 62 62 chr1 130453216 130453538 -112210815 + L1MC4a LINE L1 5770 6091 -1717 4823 111 8 15 chr1 130453655 130454388 -112209965 - L1PA13 LINE L1 -2 6161 5434 2145 104 34 7 chr1 130454390 130454687 -112209666 - AluSx SINE Alu -7 305 1 34 24 0 0 chr1 130454718 130454759 -112209594 + AT_rich Low_complexity Low_complexity 1 41 0 776 281 35 47 chr1 130455325 130455667 -112208686 - MLT1I LTR MaLR 0 409 72 496 229 0 0 chr1 130455728 130455833 -112208520 + MER58B DNA MER1_type 1 105 -236 248 230 0 14 chr1 130455843 130455917 -112208436 + GA-rich Low_complexity Low_complexity 2 74 0 339 226 24 24 chr1 130455930 130456014 -112208339 + MER58B DNA MER1_type 258 341 0 553 217 8 15 chr1 130456245 130456391 -112207962 + L1M3 LINE L1 5140 5286 -860 1480 162 20 57 chr1 130456391 130456687 -112207666 + AluJo SINE Alu 1 285 -27 553 217 8 15 chr1 130456687 130456699 -112207654 + L1M3 LINE L1 5286 5297 -849 58 54 0 0 chr1 130456699 130456792 -112207561 + AT_rich Low_complexity Low_complexity 1 93 0 854 122 0 44 chr1 130456792 130456973 -112207380 + L1M3 LINE L1 5270 5442 -738 16862 145 45 6 chr1 130457073 130461444 -112202909 - L1PBa LINE L1 -2314 4548 5 527 233 159 40 chr1 130463635 130463811 -112200542 + MIR SINE MIR 33 229 -33 416 233 12 0 chr1 130464077 130464163 -112200190 + L2 LINE L2 3186 3272 -41 1146 337 171 15 chr1 130464654 130465520 -112198833 + L2 LINE L2 793 1793 -1521 10758 171 68 32 chr1 130465527 130465586 -112198767 + L1MCa LINE L1 39 94 -6332 2218 117 3 0 chr1 130465586 130465884 -112198469 + AluSq SINE Alu 1 299 -14 10758 171 68 32 chr1 130465884 130468476 -112195877 + L1MCa LINE L1 94 2787 -3639 1134 133 5 31 chr1 130468576 130468771 -112195582 + AluSg/x SINE Alu 103 292 -18 343 274 59 30 chr1 130468772 130468907 -112195446 - MIR SINE MIR -28 234 96 226 184 0 0 chr1 130468983 130469021 -112195332 - MIR SINE MIR -165 97 60 192 359 84 14 chr1 130469175 130469317 -112195036 + L2 LINE L2 2584 2735 -579 312 27 0 0 chr1 130470162 130470199 -112194154 + (TG)n Simple_repeat Simple_repeat 1 37 0 186 103 0 0 chr1 130470199 130470228 -112194125 + (GA)n Simple_repeat Simple_repeat 2 30 0 313 345 25 25 chr1 130471225 130471344 -112193009 + MIR SINE MIR 20 138 -124 717 290 86 34 chr1 130471984 130472542 -112191811 - L1ME LINE L1 -351 5811 5205 2498 72 0 3 chr1 130472542 130472846 -112191507 - AluY SINE Alu -8 303 1 717 290 86 34 chr1 130472846 130473056 -112191297 - L1ME LINE L1 -957 5205 5007 783 179 55 32 chr1 130473056 130473274 -112191079 - Charlie1 DNA MER1_type -655 2106 1884 651 262 78 34 chr1 130473288 130473376 -112190977 - L1ME LINE L1 -2885 3261 3178 1845 120 4 15 chr1 130473376 130473643 -112190710 - AluSx SINE Alu 0 312 49 651 262 78 34 chr1 130473643 130474115 -112190238 - L1ME LINE L1 -2968 3178 2676 2472 93 29 0 chr1 130474209 130474554 -112189799 - THE1A LTR MaLR 0 355 1 7594 88 6 2 chr1 130474554 130475616 -112188737 - THE1A-int LTR MaLR 0 1580 515 1155 157 5 5 chr1 130476974 130477178 -112187175 + MER2 DNA MER2_type 7 210 -135 2070 152 21 24 chr1 130477269 130477644 -112186709 - L1PB4 LINE L1 -1 6155 5782 403 171 13 13 chr1 130477669 130477745 -112186608 + MER2 DNA MER2_type 270 345 0 467 354 79 20 chr1 130477914 130478219 -112186134 - L3 LINE CR1 -174 1403 1081 184 347 31 20 chr1 130478936 130479034 -112185319 - L3 LINE CR1 -1070 507 409 180 0 0 0 chr1 130479071 130479091 -112185262 + (TGGA)n Simple_repeat Simple_repeat 4 23 0 1752 162 32 29 chr1 130479287 130479595 -112184758 - AluJo SINE Alu -1 311 3 397 262 92 16 chr1 130479602 130479870 -112184483 - L1MC4 LINE L1 -138 7904 7507 4681 114 70 6 chr1 130480535 130481286 -112183067 - L1MA8 LINE L1 -1 6290 5484 2112 113 39 0 chr1 130481286 130481569 -112182784 - AluSx SINE Alu -18 294 1 4681 114 70 6 chr1 130481569 130481613 -112182740 - L1MA8 LINE L1 -807 5484 5444 225 0 0 0 chr1 130481704 130481729 -112182624 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 778 161 0 0 chr1 130481729 130481853 -112182500 - FRAM SINE Alu -32 144 21 300 351 46 0 chr1 130482074 130482225 -112182128 - L2 LINE L2 -925 2389 2232 1842 145 0 86 chr1 130482228 130482566 -112181787 + AluSx SINE Alu 1 309 -3 300 220 10 20 chr1 130482570 130482670 -112181683 + GA-rich Low_complexity Low_complexity 2 100 0 1785 126 3 80 chr1 130482909 130483234 -112181119 - AluJb SINE Alu -12 300 1 21 57 0 0 chr1 130483347 130483382 -112180971 + AT_rich Low_complexity Low_complexity 1 35 0 216 24 48 24 chr1 130483427 130483469 -112180884 + (TA)n Simple_repeat Simple_repeat 2 44 0 1143 207 95 0 chr1 130483484 130484043 -112180310 - L1ME2 LINE L1 -11 6153 5361 2127 106 3 0 chr1 130484057 130484341 -112180012 - AluSg SINE Alu -25 285 1 3739 42 10 7 chr1 130484512 130485339 -112179014 - L1P3 LINE L1 -393 5761 4938 888 253 72 7 chr1 130485315 130485576 -112178777 - L1ME2 LINE L1 -1311 4835 4552 * 2356 94 6 9 chr1 130485576 130485918 -112178435 + L1PA13 LINE L1 5814 6154 -9 888 253 72 7 chr1 130485918 130485948 -112178405 - L1ME2 LINE L1 -1594 4552 4525 2302 298 33 35 chr1 130485959 130485993 -112178360 + L1MC1 LINE L1 2 35 -6035 1211 204 54 49 chr1 130485993 130486380 -112177973 - MLT1B LTR MaLR -1 389 1 2302 298 33 35 chr1 130486380 130487379 -112176974 + L1MC1 LINE L1 35 1033 -5037 287 330 0 19 chr1 130488214 130488317 -112176036 + Charlie7 DNA MER1_type 1 101 -2511 2642 82 8 0 chr1 130488363 130488715 -112175638 + THE1A LTR MaLR 1 355 0 3840 70 9 26 chr1 130488715 130489254 -112175099 + THE1A-int LTR MaLR 1 530 -1050 4872 234 17 33 chr1 130489363 130490750 -112173603 + L1MC1 LINE L1 2711 4074 -2006 270 116 0 0 chr1 130490750 130490793 -112173560 + (TC)n Simple_repeat Simple_repeat 1 43 0 6243 168 36 5 chr1 130490897 130492304 -112172049 + L1MC1 LINE L1 4807 6267 0 2099 292 96 44 chr1 130492317 130492526 -112171827 + L2 LINE L2 1812 2009 -1263 2151 109 7 3 chr1 130492526 130492819 -112171534 - AluSx SINE Alu -18 294 1 2099 292 96 44 chr1 130492819 130493962 -112170391 + L2 LINE L2 2009 3270 -2 232 278 83 0 chr1 130493962 130494034 -112170319 + MIR SINE MIR 66 143 -65 36 0 0 0 chr1 130494053 130494089 -112170264 + AT_rich Low_complexity Low_complexity 1 36 0 763 192 0 8 chr1 130494329 130494459 -112169894 + FLAM_C SINE Alu 1 129 -14 68 60 0 0 chr1 130494459 130494576 -112169777 + AT_rich Low_complexity Low_complexity 1 117 0 196 136 15 30 chr1 130495214 130495280 -112169073 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 355 294 76 34 chr1 130496207 130496326 -112168027 + L2 LINE L2 3149 3272 0 21773 90 40 39 chr1 130547106 130550793 -112113560 + HERV9 LTR ERV1 20 2940 0 191 296 14 0 chr1 130550918 130550989 -112113364 + MIR SINE MIR 121 192 -70 2143 138 0 0 chr1 130551016 130551327 -112113026 + AluSx SINE Alu 1 311 -1 466 317 87 11 chr1 130551600 130551805 -112112548 - MIR SINE MIR -45 217 4 337 301 35 9 chr1 130553420 130553533 -112110820 + MIR SINE MIR 26 141 -67 821 141 0 8 chr1 130554503 130554631 -112109722 - AluSq/x SINE Alu -185 127 1 1774 156 38 0 chr1 130554645 130554934 -112109419 + AluJb SINE Alu 1 300 -12 464 158 0 61 chr1 130554934 130555016 -112109337 - FLAM_A SINE Alu -29 113 37 1058 276 89 20 chr1 130555709 130556100 -112108253 + L1ME LINE L1 77 494 -5576 362 270 99 13 chr1 130556118 130556351 -112108002 + L1 LINE L1 3332 3584 -2562 1651 238 15 10 chr1 130556417 130556812 -112107541 - L1M4 LINE L1 -1910 4236 3840 1951 152 10 0 chr1 130556815 130557124 -112107229 - AluSx SINE Alu 0 312 1 976 135 39 6 chr1 130557277 130557455 -112106898 + AluSg/x SINE Alu 120 303 -7 23 54 0 0 chr1 130559159 130559196 -112105157 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr1 130559972 130560000 -112104353 + AT_rich Low_complexity Low_complexity 1 28 0 676 217 0 16 chr1 130560293 130560422 -112103931 + FLAM_C SINE Alu 2 128 -5 2498 25 0 0 chr1 130560422 130560697 -112103656 + L1PA2 LINE L1 5881 6155 0 398 332 23 42 chr1 130560707 130560921 -112103432 - L1MC/D LINE L1 -1999 5809 5600 609 181 60 54 chr1 130561339 130561488 -112102865 + MER69 DNA AcHobo 1 150 -2376 407 130 0 14 chr1 130561490 130561559 -112102794 + MER69 DNA AcHobo 2457 2524 -2 1698 253 10 26 chr1 130563104 130563606 -112100747 + L1MA9 LINE L1 5775 6274 -38 324 0 0 0 chr1 130564317 130564353 -112100000 + (CA)n Simple_repeat Simple_repeat 2 37 0 329 250 14 100 chr1 130565246 130565386 -112098967 - MIR SINE MIR -31 231 104 2554 52 13 0 chr1 130565436 130565743 -112098610 + AluY SINE Alu 1 311 0 3390 210 46 27 chr1 130565845 130566313 -112098040 - L1ME1 LINE L1 -3 6163 5705 2192 125 16 0 chr1 130566313 130566616 -112097737 - AluSx SINE Alu -4 308 1 3390 210 46 27 chr1 130566616 130567534 -112096819 - L1ME1 LINE L1 -461 5705 4756 660 113 0 167 chr1 130567534 130567684 -112096669 + MLT2C1 LTR ERVL 1 125 -272 1905 18 5 14 chr1 130567684 130567902 -112096451 - L1PA5 LINE L1 -5 6149 5934 1290 21 0 0 chr1 130567902 130568047 -112096306 + L1PA4 LINE L1 5753 5897 -258 1407 133 40 97 chr1 130568047 130568276 -112096077 + MLT2C1 LTR ERVL 115 325 -72 414 0 0 0 chr1 130568276 130568322 -112096031 + (CA)n Simple_repeat Simple_repeat 2 47 0 1407 133 40 97 chr1 130568322 130568392 -112095961 + MLT2C1 LTR ERVL 325 397 0 325 200 0 0 chr1 130568392 130568457 -112095896 - L1ME1 LINE L1 -1386 4760 4696 482 317 55 72 chr1 130568907 130569197 -112095156 - MLT1K LTR MaLR -159 429 145 526 276 31 12 chr1 130570439 130570602 -112093751 + MLT1I LTR MaLR 244 409 0 1831 142 28 10 chr1 130571898 130572187 -112092166 + AluSx SINE Alu 2 295 -17 623 300 50 61 chr1 130572424 130572801 -112091552 + MLT1I LTR MaLR 37 409 0 219 269 90 13 chr1 130572810 130572888 -112091465 - MIR SINE MIR -167 95 12 15393 82 17 9 chr1 130574099 130576339 -112088014 + HERV9 LTR ERV1 840 4985 -3414 3775 91 4 13 chr1 130576337 130576873 -112087480 + HERV9 LTR ERV1 7503 8033 -366 * 1750 191 43 9 chr1 130578036 130578382 -112085971 + MLT1B LTR MaLR 1 358 -32 1291 74 0 2 chr1 130578382 130578625 -112085728 - AluY SINE Alu -18 293 2 304 133 0 0 chr1 130578625 130578670 -112085683 + MLT1B LTR MaLR 346 390 0 2041 122 0 0 chr1 130578712 130578983 -112085370 + AluSx SINE Alu 19 289 -23 222 118 0 0 chr1 130578993 130579027 -112085326 + (CA)n Simple_repeat Simple_repeat 2 35 0 402 259 40 84 chr1 130579027 130579206 -112085147 + L1MC4a LINE L1 5650 5816 -1992 1602 166 39 7 chr1 130579206 130579489 -112084864 + AluJb SINE Alu 1 292 -20 402 259 40 84 chr1 130579489 130579560 -112084793 + L1MC4a LINE L1 5816 5889 -1919 1763 68 25 4 chr1 130579853 130580089 -112084264 - HERV17 LTR ERV1 -5647 2979 2739 10358 95 22 41 chr1 130580091 130581662 -112082691 - HERV17 LTR ERV1 -7086 1540 1 1919 101 54 23 chr1 130581662 130582122 -112082231 - LTR17 LTR ERV1 0 780 257 2126 146 4 55 chr1 130582122 130582612 -112081741 - L1M2 LINE L1 -726 5586 5118 253 139 0 0 chr1 130582612 130582648 -112081705 - U2 snRNA snRNA -152 36 1 2126 146 4 55 chr1 130582648 130582820 -112081533 - L1M2 LINE L1 -1194 5118 4939 * 5015 155 14 63 chr1 130582807 130583313 -112081040 - L1MA7 LINE L1 0 6291 5762 623 87 24 8 chr1 130583313 130583440 -112080913 + (TTATG)n Simple_repeat Simple_repeat 2 130 0 1761 152 7 14 chr1 130583440 130583729 -112080624 - AluJb SINE Alu -25 287 1 5015 155 14 63 chr1 130583729 130584266 -112080087 - L1MA7 LINE L1 -527 5764 5298 401 194 58 0 chr1 130584268 130584371 -112079982 - L1M LINE L1 -929 5362 5254 * 3740 145 106 13 chr1 130584340 130585124 -112079229 - L1MA7 LINE L1 -1133 5013 4157 5850 151 23 21 chr1 130585159 130586438 -112077915 - L1MA5 LINE L1 0 6300 5016 2847 140 2 95 chr1 130586437 130586557 -112077796 - L1MA7 LINE L1 -1969 4177 4047 * 2011 163 0 3 chr1 130586557 130586870 -112077483 - AluSx SINE Alu 0 312 1 2847 140 2 95 chr1 130586870 130587340 -112077013 - L1MA7 LINE L1 -2099 4047 3642 2198 119 7 0 chr1 130587340 130587643 -112076710 - AluSq SINE Alu -8 305 1 4550 245 26 48 chr1 130587651 130589155 -112075198 - L1MEc LINE L1 -4812 1584 114 1902 122 7 10 chr1 130589155 130589450 -112074903 - L1PA16 LINE L1 -4 6162 5869 4550 245 26 48 chr1 130589450 130589528 -112074825 - L1MEc LINE L1 -6282 114 36 1611 197 0 10 chr1 130589555 130589845 -112074508 - AluJo SINE Alu -24 288 2 4645 113 14 0 chr1 130590198 130590824 -112073529 - MER41B LTR ERV1 0 635 1 214 354 0 0 chr1 130590980 130591062 -112073291 - MIR SINE MIR -4 258 177 451 282 17 17 chr1 130591202 130591319 -112073034 - MIR SINE MIR -122 140 24 240 274 108 0 chr1 130593158 130593260 -112071093 + MIR SINE MIR 117 229 -33 908 216 20 41 chr1 130593260 130593399 -112070954 - MER69 DNA AcHobo 0 2526 2386 2101 107 0 27 chr1 130593399 130593697 -112070656 + AluSq SINE Alu 1 290 -23 185 0 0 39 chr1 130593701 130593727 -112070626 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 908 216 20 41 chr1 130593727 130593827 -112070526 - MER69 DNA AcHobo -143 2383 2287 21 57 0 0 chr1 130593843 130593878 -112070475 + AT_rich Low_complexity Low_complexity 1 35 0 204 154 53 35 chr1 130593878 130594047 -112070306 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 26 101 0 0 chr1 130594049 130594138 -112070215 + AT_rich Low_complexity Low_complexity 1 89 0 1029 211 37 0 chr1 130594139 130594385 -112069968 - MER69 DNA AcHobo -262 2264 2010 444 264 0 0 chr1 130594400 130594491 -112069862 - MER69 DNA AcHobo -676 550 460 293 204 0 0 chr1 130594706 130594755 -112069598 - MER69 DNA AcHobo -994 232 184 5275 200 40 71 chr1 130596931 130597938 -112066415 + L1 LINE L1 2828 3768 -2378 813 100 0 0 chr1 130597938 130598048 -112066305 + AluY SINE Alu 195 304 -7 5275 200 40 71 chr1 130598048 130599005 -112065348 + L1 LINE L1 3768 4753 -1393 861 129 0 0 chr1 130599005 130599121 -112065232 + FLAM_C SINE Alu 1 116 -17 315 0 0 0 chr1 130599135 130599170 -112065183 + (TG)n Simple_repeat Simple_repeat 2 36 0 495 218 186 6 chr1 130600294 130600450 -112063903 + MIR SINE MIR 67 250 -12 390 271 156 0 chr1 130601514 130601636 -112062717 - MIR SINE MIR -58 204 64 259 297 71 26 chr1 130602012 130602167 -112062186 + L2 LINE L2 2590 2751 -563 245 235 0 78 chr1 130602170 130602272 -112062081 + L1ME LINE L1 5804 5897 -224 2268 97 13 0 chr1 130602300 130602598 -112061755 + AluSx SINE Alu 1 302 -10 582 276 88 13 chr1 130602732 130602960 -112061393 + L1MC4a LINE L1 5410 5654 -2154 1036 185 22 11 chr1 130602964 130603148 -112061205 + MER5A DNA MER1_type 4 189 0 248 296 72 48 chr1 130603628 130603753 -112060600 - MIR SINE MIR -113 149 22 181 231 31 62 chr1 130603984 130604049 -112060304 + L2 LINE L2 3133 3195 -77 711 221 86 75 chr1 130604218 130604602 -112059751 + L1MC4a LINE L1 6079 6466 -1342 1739 216 46 64 chr1 130604615 130605115 -112059238 + MLT1E2 LTR MaLR 3 493 -133 21 0 0 0 chr1 130605373 130605394 -112058959 + AT_rich Low_complexity Low_complexity 1 21 0 1033 105 8 0 chr1 130605396 130605529 -112058824 - AluSq/x SINE Alu -177 135 2 2579 117 3 0 chr1 130605531 130605908 -112058445 - L1MA8 LINE L1 -342 5949 5572 2675 55 3 0 chr1 130605934 130606259 -112058094 - LTR17 LTR ERV1 -454 326 1 2365 64 15 0 chr1 130606259 130606558 -112057795 - HERV17 LTR ERV1 0 8626 6835 283 77 0 0 chr1 130606537 130606576 -112057777 - HERV17 LTR ERV1 -1078 7548 7510 * 20885 39 5 4 chr1 130606570 130608999 -112055354 - HERV17 LTR ERV1 -2608 6018 3586 1488 183 0 35 chr1 130608999 130609337 -112055016 + pTR5 LTR ERV1 743 1068 -1370 296 191 12 95 chr1 130609479 130609563 -112054790 + MLT1E2 LTR MaLR 534 610 -16 1517 160 60 81 chr1 130609563 130609932 -112054421 - MLT1B LTR MaLR -2 388 28 2892 219 82 98 chr1 130609934 130610629 -112053724 + L1MC4 LINE L1 6611 7315 -727 2342 93 3 3 chr1 130610629 130610931 -112053422 - AluSp SINE Alu -11 302 1 2892 219 82 98 chr1 130610931 130611199 -112053154 + L1MC4 LINE L1 7315 7586 -456 2301 102 3 0 chr1 130611199 130611504 -112052849 + AluSq SINE Alu 1 306 -7 2892 219 82 98 chr1 130611504 130611540 -112052813 + L1MC4 LINE L1 7586 7621 -421 1640 169 45 21 chr1 130611540 130611871 -112052482 + L1MA7 LINE L1 5953 6291 0 2892 219 82 98 chr1 130611871 130611893 -112052460 + L1MC4 LINE L1 7621 7642 -400 2035 146 0 0 chr1 130611893 130612195 -112052158 + AluSx SINE Alu 3 304 -8 2892 219 82 98 chr1 130612195 130612480 -112051873 + L1MC4 LINE L1 7642 7900 -142 376 228 82 88 chr1 130612493 130612584 -112051769 - MER63A DNA MER1_type -1492 196 105 2264 95 3 0 chr1 130612584 130612879 -112051474 + AluY SINE Alu 1 296 -15 376 228 82 88 chr1 130612879 130612958 -112051395 - MER63A DNA MER1_type -1583 105 27 218 319 11 11 chr1 130613492 130613583 -112050770 + CT-rich Low_complexity Low_complexity 3 93 0 1773 150 17 30 chr1 130613774 130614074 -112050279 - AluJb SINE Alu -16 296 1 1921 150 0 0 chr1 130614159 130614445 -112049908 + AluSx SINE Alu 13 298 -14 282 217 0 29 chr1 130614510 130614579 -112049774 + CT-rich Low_complexity Low_complexity 3 69 0 201 39 0 0 chr1 130615886 130615912 -112048441 + (TA)n Simple_repeat Simple_repeat 1 26 0 507 222 134 12 chr1 130615916 130616087 -112048266 - MIR SINE MIR -57 205 14 21 36 0 0 chr1 130616560 130616588 -112047765 + AT_rich Low_complexity Low_complexity 1 28 0 527 220 117 110 chr1 130617722 130617995 -112046358 + MER102b DNA MER1_type 65 339 -2 238 407 0 0 chr1 130618550 130618631 -112045722 + MIR SINE MIR 21 101 -161 1700 134 11 4 chr1 130618814 130619075 -112045278 + AluY SINE Alu 43 305 -6 814 265 128 25 chr1 130619195 130619595 -112044758 + L1ME4a LINE L1 5483 5933 -188 2338 66 40 17 chr1 130619595 130619897 -112044456 + AluY SINE Alu 1 309 -2 814 265 128 25 chr1 130619897 130619933 -112044420 + L1ME4a LINE L1 5933 5964 -157 308 271 0 42 chr1 130619946 130620042 -112044311 - L1MC4 LINE L1 -1337 6705 6614 27 29 0 0 chr1 130620221 130620255 -112044098 + AT_rich Low_complexity Low_complexity 1 34 0 2109 130 0 13 chr1 130620263 130620579 -112043774 + AluSx SINE Alu 1 312 0 208 143 0 0 chr1 130622852 130622887 -112041466 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 196 250 0 0 chr1 130623344 130623388 -112040965 - L2 LINE L2 -35 3237 3194 23 0 0 0 chr1 130623509 130623532 -112040821 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr1 130623628 130623651 -112040702 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2108 163 49 31 chr1 130623709 130624253 -112040100 + MLT2A2 LTR ERVL 1 554 0 618 276 192 15 chr1 130624253 130624589 -112039764 + L1ME LINE L1 5361 5756 -365 1451 136 0 18 chr1 130624711 130624932 -112039421 - AluSg/x SINE Alu -23 287 71 649 118 17 17 chr1 130624944 130625063 -112039290 + T-rich Low_complexity Low_complexity 4 122 0 522 83 0 0 chr1 130625082 130625154 -112039199 + (CCCTG)n Simple_repeat Simple_repeat 4 75 0 2081 129 17 0 chr1 130625162 130625464 -112038889 - AluSq SINE Alu -6 307 1 26 30 0 0 chr1 130625550 130625583 -112038770 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr1 130625742 130625769 -112038584 + AT_rich Low_complexity Low_complexity 1 27 0 261 316 129 67 chr1 130625964 130626189 -112038164 - L2 LINE L2 -359 2955 2717 265 396 29 7 chr1 130626571 130626710 -112037643 - L2 LINE L2 -188 3084 2943 450 134 0 124 chr1 130626838 130626893 -112037460 + MSTB LTR MaLR 1 41 -385 2350 100 0 0 chr1 130626893 130627194 -112037159 + AluY SINE Alu 1 301 -10 450 134 0 124 chr1 130627194 130627235 -112037118 + MSTB LTR MaLR 41 85 -341 1332 148 52 44 chr1 130627383 130627625 -112036728 + MSTB LTR MaLR 111 357 -69 2472 76 0 0 chr1 130627625 130627928 -112036425 - AluY SINE Alu -8 303 1 1332 148 52 44 chr1 130627928 130627955 -112036398 + MSTB LTR MaLR 357 382 -44 556 163 33 0 chr1 130627955 130628047 -112036306 + U13 snRNA snRNA 1 95 -9 286 176 39 0 chr1 130628069 130628120 -112036233 + MSTB LTR MaLR 376 428 0 323 298 92 52 chr1 130628135 130628407 -112035946 - L2 LINE L2 -528 2786 2504 497 254 86 64 chr1 130628424 130628639 -112035714 - MIR SINE MIR -36 226 13 1688 211 82 49 chr1 130628859 130629346 -112035007 - MLT1D LTR MaLR 0 505 3 229 333 0 0 chr1 130630302 130630371 -112033982 - tRNA-Ile-ATT tRNA tRNA -2 75 7 1045 162 152 48 chr1 130630848 130631145 -112033208 - MER33 DNA MER1_type -5 319 1 181 271 43 29 chr1 130631485 130631555 -112032798 + MIR SINE MIR 13 83 -179 193 360 93 23 chr1 130632673 130632887 -112031466 + L2 LINE L2 2701 2929 -385 1791 116 37 0 chr1 130633336 130633604 -112030749 + AluSx SINE Alu 1 278 -34 180 0 0 0 chr1 130633605 130633625 -112030728 + (CA)n Simple_repeat Simple_repeat 1 20 0 3211 225 65 20 chr1 130633657 130634994 -112029359 + L1ME1 LINE L1 4832 6176 -2 23 33 0 0 chr1 130635507 130635537 -112028816 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr1 130635653 130635690 -112028663 + AT_rich Low_complexity Low_complexity 1 37 0 356 321 49 0 chr1 130635905 130636067 -112028286 + L1M4 LINE L1 3337 3506 -2640 1623 272 68 45 chr1 130636073 130636824 -112027529 + L1ME LINE L1 6 773 -5297 4332 78 5 0 chr1 130636940 130637493 -112026860 + HERV17 LTR ERV1 3032 3587 -5039 7400 102 53 47 chr1 130637493 130639411 -112024942 - pTR5 LTR ERV1 0 8399 76 340 358 22 7 chr1 130639663 130639800 -112024553 - MIR3 SINE MIR -53 155 17 385 309 7 67 chr1 130640292 130640441 -112023912 - MIR3 SINE MIR -23 185 46 208 286 71 54 chr1 130641842 130641954 -112022399 - MER5A DNA MER1_type -71 118 5 1991 136 3 10 chr1 130643597 130643898 -112020455 - AluSx SINE Alu -13 299 1 192 250 0 50 chr1 130644188 130644248 -112020105 + L3 LINE CR1 520 576 -1001 25 0 0 0 chr1 130644604 130644629 -112019724 + AT_rich Low_complexity Low_complexity 1 25 0 187 365 48 30 chr1 130644943 130645110 -112019243 - L2 LINE L2 -177 3095 2926 240 163 0 0 chr1 130645375 130645418 -112018935 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 231 152 0 0 chr1 130645422 130645468 -112018885 - LTR66 LTR ERVL -171 439 394 244 229 24 0 chr1 130645475 130645558 -112018795 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 7409 58 7 3 chr1 130645563 130646966 -112017387 + L1PA7 LINE L1 4742 6150 -4 3661 159 30 11 chr1 130647136 130647772 -112016581 - L1PB4 LINE L1 -6 6150 5503 593 230 174 46 chr1 130648791 130649195 -112015158 + MLT1J LTR MaLR 1 499 -12 208 277 48 48 chr1 130650888 130650971 -112013382 - L3b LINE CR1 -385 1198 1116 353 303 39 53 chr1 130651441 130651649 -112012704 - L1MC4a LINE L1 -1873 5935 5731 189 0 0 0 chr1 130651663 130651684 -112012669 + (TG)n Simple_repeat Simple_repeat 2 22 0 330 246 18 18 chr1 130651925 130652039 -112012314 + (TA)n Simple_repeat Simple_repeat 1 114 0 2954 226 67 20 chr1 130652116 130652878 -112011475 - L1MEc LINE L1 -5541 855 58 309 304 99 24 chr1 130652880 130653173 -112011180 - L1MC4a LINE L1 -1095 5051 4737 305 275 12 0 chr1 130653728 130653808 -112010545 + L2 LINE L2 3233 3313 0 277 146 0 0 chr1 130654034 130654082 -112010271 - AluSp SINE Alu -7 296 249 1467 116 5 0 chr1 130654082 130654281 -112010072 - AluSp SINE Alu -113 200 1 277 302 132 0 chr1 130655579 130655708 -112008645 + MIR3 SINE MIR 35 180 -28 403 346 19 13 chr1 130655899 130656055 -112008298 + MIR SINE MIR 2 158 -104 808 289 136 53 chr1 130656066 130656536 -112007817 - LTR67 LTR ERVL -13 544 36 29 70 0 0 chr1 130656716 130656773 -112007580 + AT_rich Low_complexity Low_complexity 1 57 0 8540 82 19 0 chr1 130656777 130658682 -112005671 + L1PA8 LINE L1 4144 6080 -92 22 0 0 0 chr1 130658682 130658704 -112005649 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 130658723 130658750 -112005603 + AT_rich Low_complexity Low_complexity 1 27 0 2167 118 0 0 chr1 130658750 130659039 -112005314 - AluSx SINE Alu -23 289 1 445 250 61 0 chr1 130659057 130659205 -112005148 - L1ME4a LINE L1 -248 5873 5717 8097 164 22 25 chr1 130659246 130660711 -112003642 - L1P LINE L1 -4675 1471 11 2071 142 0 19 chr1 130660801 130661119 -112003234 - AluSx SINE Alu 0 312 1 572 276 83 45 chr1 130661119 130661508 -112002845 - L1ME4a LINE L1 -460 5661 5256 812 196 164 0 chr1 130661542 130661761 -112002592 - L1ME3 LINE L1 0 6162 5908 460 214 10 0 chr1 130661819 130661917 -112002436 + MIR SINE MIR 107 205 -57 276 30 0 0 chr1 130662121 130662154 -112002199 + (TG)n Simple_repeat Simple_repeat 2 34 0 221 364 54 8 chr1 130662410 130662539 -112001814 + L2 LINE L2 2751 2885 -429 211 259 204 54 chr1 130662678 130662825 -112001528 + L2 LINE L2 3143 3311 -2 32 43 0 0 chr1 130663840 130663886 -112000467 + AT_rich Low_complexity Low_complexity 1 46 0 279 207 74 59 chr1 130663934 130664069 -112000284 - L1ME2 LINE L1 -67 6097 5961 467 303 0 25 chr1 130664156 130664318 -112000035 - L1MC5 LINE L1 -435 7526 7369 398 259 15 30 chr1 130665319 130665454 -111998899 - L1MC5 LINE L1 -868 7093 6961 3712 157 13 14 chr1 130665489 130666126 -111998227 - L1MB1 LINE L1 -1 6167 5532 3839 201 26 14 chr1 130666840 130667652 -111996701 - L1MB7 LINE L1 -16 6168 5347 1419 135 0 5 chr1 130668413 130668620 -111995733 + AluSp SINE Alu 76 281 -32 180 263 18 35 chr1 130668690 130668747 -111995606 - L2 LINE L2 0 3272 3217 269 311 185 0 chr1 130669982 130670101 -111994252 + MIR3 SINE MIR 65 205 -3 2720 246 86 28 chr1 130671472 130672352 -111992001 + L1ME3A LINE L1 4060 4887 -1283 2052 120 0 49 chr1 130672352 130672678 -111991675 + AluSx SINE Alu 1 310 -2 2720 246 86 28 chr1 130672678 130673714 -111990639 + L1ME3A LINE L1 4887 6094 -76 340 253 11 11 chr1 130675059 130675146 -111989207 - MER5B DNA MER1_type -2 176 90 1590 220 7 46 chr1 130676456 130676869 -111987484 - MLT2C1 LTR ERVL 0 397 1 1700 164 19 35 chr1 130676869 130677181 -111987172 + AluJo SINE Alu 1 307 -5 399 289 124 0 chr1 130677359 130677480 -111986873 - L2 LINE L2 0 3272 3137 197 316 72 101 chr1 130678434 130678712 -111985641 + L2 LINE L2 2957 3226 -46 207 250 0 0 chr1 130679211 130679251 -111985102 + L2 LINE L2 3264 3303 -10 953 226 28 36 chr1 130680857 130681105 -111983248 + MER102a DNA MER1_type 77 322 -8 457 311 0 8 chr1 130681259 130681381 -111982972 + L2 LINE L2 3142 3262 -10 21 36 0 0 chr1 130682614 130682642 -111981711 + AT_rich Low_complexity Low_complexity 1 28 0 338 307 0 0 chr1 130682728 130682816 -111981537 - MER117 DNA MER1_type -3 194 107 281 280 17 34 chr1 130682911 130683029 -111981324 + MER114 LTR ERV 533 648 0 232 191 73 29 chr1 130683425 130683493 -111980860 - MIR SINE MIR -73 189 119 189 0 0 0 chr1 130684971 130684992 -111979361 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 4025 133 27 2 chr1 130685237 130685825 -111978528 + LTR26 LTR ERV1 1 603 0 1977 122 10 10 chr1 130686099 130686394 -111977959 - AluSx SINE Alu -17 295 1 700 323 43 4 chr1 130687115 130687394 -111976959 - L3 LINE CR1 -97 1480 1191 788 282 124 62 chr1 130687708 130688251 -111976102 - L2 LINE L2 -1 3312 2741 743 138 46 0 chr1 130688272 130688381 -111975972 + FLAM_C SINE Alu 11 124 -19 1884 167 3 7 chr1 130688417 130688717 -111975636 + AluJo SINE Alu 3 301 -11 242 268 0 28 chr1 130688982 130689053 -111975300 - MIR SINE MIR -148 114 46 2690 81 14 11 chr1 130689077 130689447 -111974906 + THE1C LTR MaLR 1 371 -4 2382 78 0 0 chr1 130689527 130689811 -111974542 + AluSg SINE Alu 1 284 -26 994 139 37 94 chr1 130690014 130690258 -111974095 - L1MA10 LINE L1 -60 6274 6045 610 62 0 0 chr1 130690258 130690338 -111974015 + L1MA10 LINE L1 6255 6334 0 2012 144 3 7 chr1 130690442 130690740 -111973613 + AluSx SINE Alu 1 297 -15 442 209 15 8 chr1 130691919 130692053 -111972300 + CT-rich Low_complexity Low_complexity 1 135 0 376 326 21 0 chr1 130692501 130692645 -111971708 - MIR SINE MIR -16 246 100 2936 94 23 0 chr1 130692645 130693039 -111971314 + MLT2A1 LTR ERVL 1 403 -41 276 54 0 0 chr1 130693075 130693112 -111971241 + MLT2A1 LTR ERVL 399 435 -18 2358 84 0 16 chr1 130695822 130696131 -111968222 - AluY SINE Alu -7 304 1 244 245 64 32 chr1 130696515 130696609 -111967744 + MIR SINE MIR 45 141 -67 725 211 4 0 chr1 130696818 130697022 -111967331 + (CCTAT)n Simple_repeat Simple_repeat 1 269 -59 453 81 0 0 chr1 130697022 130697084 -111967269 + (CAGCC)n Simple_repeat Simple_repeat 4 65 0 725 211 4 0 chr1 130697084 130697145 -111967208 + (CCTAT)n Simple_repeat Simple_repeat 269 328 0 309 311 118 50 chr1 130697627 130697865 -111966488 + HAL1 LINE L1 1348 1601 -906 733 110 0 18 chr1 130698349 130698458 -111965895 - AluSg/x SINE Alu 0 309 203 984 266 151 27 chr1 130698967 130699411 -111964942 + MLT1G1 LTR MaLR 97 595 0 2294 72 6 31 chr1 130699961 130700280 -111964073 - AluY SINE Alu 0 311 1 199 196 118 0 chr1 130700339 130700390 -111963963 + MER5B DNA MER1_type 122 178 0 227 237 17 0 chr1 130700426 130700485 -111963868 + MER5A DNA MER1_type 99 158 -31 300 261 126 17 chr1 130701462 130701581 -111962772 + MIR SINE MIR 120 251 -11 188 243 0 0 chr1 130701549 130701586 -111962767 + L2 LINE L2 3265 3301 -12 * 312 79 0 0 chr1 130701781 130701819 -111962534 + U2 snRNA snRNA 1 38 -150 181 286 19 29 chr1 130702414 130702519 -111961834 + L2 LINE L2 2128 2231 -1083 865 249 40 86 chr1 130702568 130702917 -111961436 + MLT1I LTR MaLR 71 403 -6 821 172 33 4 chr1 130703929 130704178 -111960175 + CT-rich Low_complexity Low_complexity 1 256 0 740 253 4 64 chr1 130704179 130704428 -111959925 + MIR SINE MIR 29 262 0 455 278 75 11 chr1 130705122 130705309 -111959044 + MIR SINE MIR 15 213 -49 784 219 67 49 chr1 130705657 130706055 -111958298 - MLT2B1 LTR ERVL 0 535 124 289 340 121 0 chr1 130706347 130706488 -111957865 - MIR3 SINE MIR -34 174 17 194 285 192 8 chr1 130706725 130706855 -111957498 - L2 LINE L2 0 3313 3160 917 140 62 0 chr1 130707808 130707986 -111956367 - MER53 DNA DNA 0 189 1 315 0 0 0 chr1 130707997 130708032 -111956321 + (TG)n Simple_repeat Simple_repeat 2 36 0 1428 170 4 21 chr1 130708225 130708466 -111955887 + AluJo SINE Alu 40 276 -36 191 330 188 0 chr1 130708641 130708753 -111955600 + MIR SINE MIR 18 150 -112 23 86 0 0 chr1 130708770 130708828 -111955525 + AT_rich Low_complexity Low_complexity 1 58 0 216 252 28 126 chr1 130708916 130709059 -111955294 - MIR SINE MIR -78 184 56 368 216 266 38 chr1 130709103 130709235 -111955118 + MER20B DNA MER1_type 1 160 -59 287 188 75 38 chr1 130709273 130709353 -111955000 - MIR3 SINE MIR -51 157 75 3389 158 83 2 chr1 130709453 130710040 -111954313 + MER41B LTR ERV1 1 635 0 361 286 77 25 chr1 130710500 130710696 -111953657 - MIR SINE MIR -26 236 31 183 255 20 0 chr1 130711442 130711493 -111952860 - L2 LINE L2 -472 2842 2791 519 259 59 18 chr1 130712428 130712598 -111951755 - MIR SINE MIR -62 200 24 2567 29 0 29 chr1 130712745 130713052 -111951301 + AluY SINE Alu 1 298 -13 288 308 100 0 chr1 130715407 130715527 -111948826 - MER91A DNA MER1_type 0 196 65 274 272 88 8 chr1 130715660 130715785 -111948568 + MIR SINE MIR 56 190 -72 223 287 130 9 chr1 130716640 130716755 -111947598 + MIR SINE MIR 8 136 -126 1151 176 33 5 chr1 130717390 130717600 -111946753 - MER58A DNA MER1_type -8 216 1 1391 186 71 17 chr1 130717603 130717898 -111946455 - MER65A LTR ERV1 0 445 135 678 106 32 0 chr1 130717898 130717992 -111946361 - U1 snRNA snRNA -68 97 1 * 700 153 34 0 chr1 130717991 130718109 -111946244 - MER65B LTR ERV1 -409 122 1 248 255 191 0 chr1 130719961 130720055 -111944298 + MIR SINE MIR 39 150 -58 4820 124 44 69 chr1 130720055 130721257 -111943096 + pTR5 LTR ERV1 751 2225 -213 2669 30 0 7 chr1 130721257 130721558 -111942795 + AluY SINE Alu 1 299 -12 4820 124 44 69 chr1 130721558 130721767 -111942586 + pTR5 LTR ERV1 2225 2438 0 186 291 36 0 chr1 130721769 130721824 -111942529 + MIR3 SINE MIR 139 195 -13 181 229 93 93 chr1 130721953 130722093 -111942260 + MIR3 SINE MIR 1 140 -68 616 287 82 33 chr1 130722236 130722480 -111941873 + MIR SINE MIR 1 256 -6 208 307 24 41 chr1 130723222 130723354 -111940999 - MIR SINE MIR -63 145 28 1634 192 24 40 chr1 130724502 130724882 -111939471 - MLT1A2 LTR MaLR 0 374 1 183 291 0 0 chr1 130724952 130725007 -111939346 + MIR SINE MIR 181 235 -27 302 294 45 73 chr1 130725258 130725435 -111938918 - MIR SINE MIR -71 191 20 1805 167 0 14 chr1 130726657 130726944 -111937409 + AluSx SINE Alu 3 285 -27 185 274 68 60 chr1 130727085 130727202 -111937151 - MIR SINE MIR -26 236 119 2794 133 73 11 chr1 130727338 130727804 -111936549 + LTR36 LTR ERV1 86 580 -31 3212 164 28 76 chr1 130728236 130728962 -111935391 - LTR8 LTR ERV1 0 691 1 1721 156 11 52 chr1 130729224 130729583 -111934770 - MER4A LTR ERV1 -1 663 261 236 136 45 23 chr1 130729583 130729627 -111934726 - MER4A LTR ERV1 -566 98 54 9101 93 75 15 chr1 130729655 130730320 -111934033 - MER4A-int LTR ERV1 0 6598 5974 495 118 0 0 chr1 130730320 130730396 -111933957 + (TA)n Simple_repeat Simple_repeat 1 76 0 9101 93 75 15 chr1 130730396 130731164 -111933189 - MER4A-int LTR ERV1 -624 5974 5079 1057 76 21 0 chr1 130731165 130731309 -111933044 - AluYa5 SINE Alu -12 299 153 7325 94 35 25 chr1 130731313 130732472 -111931881 - MER4A-int LTR ERV1 -1511 5087 3918 2742 124 53 21 chr1 130732475 130733039 -111931314 - MER4A-int LTR ERV1 -3278 3320 2739 1087 194 93 8 chr1 130733041 130733278 -111931075 + LTR8 LTR ERV1 1 257 -434 4291 75 63 2 chr1 130733278 130733915 -111930438 - MER4A-int LTR ERV1 -4103 2495 1820 5731 118 91 14 chr1 130733918 130734862 -111929491 - MER4A-int LTR ERV1 -5574 1184 194 3283 63 176 41 chr1 130734829 130735368 -111928985 - MER4A-int LTR ERV1 -5986 612 1 * 1671 162 6 24 chr1 130735371 130735723 -111928630 - MER4A LTR ERV1 0 664 261 2314 151 20 8 chr1 130736002 130736400 -111927953 - MER57A LTR ERV1 0 403 1 3134 99 19 0 chr1 130736703 130737129 -111927224 + MER57B LTR ERV1 1 434 0 599 219 19 132 chr1 130737238 130737312 -111927041 + MLT1H LTR MaLR 29 110 -439 1920 168 3 0 chr1 130737312 130737597 -111926756 + AluJo SINE Alu 1 286 -26 599 219 19 132 chr1 130737597 130737727 -111926626 + MLT1H LTR MaLR 110 210 -339 260 245 96 85 chr1 130737774 130737962 -111926391 + MLT1H LTR MaLR 348 537 -12 1512 194 35 0 chr1 130738455 130738713 -111925640 + Tigger7 DNA MER2_type 1 267 -466 634 170 0 10 chr1 130738710 130738810 -111925543 + Tigger7 DNA MER2_type 2393 2491 0 * 2321 113 0 0 chr1 130739748 130740058 -111924295 - AluSx SINE Alu -2 310 1 393 116 0 0 chr1 130740403 130740472 -111923881 + (TG)n Simple_repeat Simple_repeat 2 70 0 1003 235 34 8 chr1 130741772 130742010 -111922343 - L2 LINE L2 -1156 2158 1915 1563 216 3 13 chr1 130742246 130742561 -111921792 - AluJb SINE Alu 0 312 1 690 261 107 111 chr1 130742800 130742985 -111921368 - MLT1L LTR MaLR -14 601 417 5024 44 5 15 chr1 130742985 130743580 -111920773 - LTR10C LTR ERV1 0 591 3 690 261 107 111 chr1 130743580 130743922 -111920431 - MLT1L LTR MaLR -198 417 74 2148 107 21 0 chr1 130743922 130744213 -111920140 + AluY SINE Alu 1 297 -14 690 261 107 111 chr1 130744213 130744262 -111920091 - MLT1L LTR MaLR -541 74 26 528 321 24 0 chr1 130744533 130744698 -111919655 - MIR SINE MIR -29 233 65 213 255 0 0 chr1 130745475 130745522 -111918831 + L2 LINE L2 3222 3268 -4 366 191 29 0 chr1 130745743 130745811 -111918542 + tRNA-Met-i tRNA tRNA 2 71 -4 401 258 68 15 chr1 130746042 130746174 -111918179 + MIR SINE MIR 67 205 -57 823 120 0 0 chr1 130746288 130746405 -111917948 - MER47A DNA MER2_type -187 179 63 796 222 75 26 chr1 130746466 130746593 -111917760 - MER20B DNA MER1_type 0 783 664 2188 114 3 0 chr1 130746593 130746882 -111917471 + AluSc SINE Alu 1 290 -19 796 222 75 26 chr1 130746882 130747020 -111917333 - MER20B DNA MER1_type -119 664 505 1467 193 0 18 chr1 130747052 130747326 -111917027 + AluJb SINE Alu 18 286 -26 236 336 115 8 chr1 130747961 130748083 -111916270 - MIR SINE MIR -24 238 104 1651 243 84 40 chr1 130748907 130749537 -111914816 + L1ME2 LINE L1 5507 6164 0 6158 118 38 4 chr1 130749640 130750543 -111913810 - THE1A-int LTR MaLR -646 934 2 2160 79 14 10 chr1 130750544 130750836 -111913517 - THE1A LTR MaLR 0 355 63 308 67 22 0 chr1 130750841 130750886 -111913467 - MADE1 DNA Mariner 0 80 35 538 48 0 0 chr1 130750905 130750968 -111913385 - THE1A LTR MaLR -292 63 1 398 309 219 4 chr1 130751332 130751485 -111912868 - L2 LINE L2 -11 3261 3142 303 28 0 0 chr1 130751485 130751521 -111912832 + (TC)n Simple_repeat Simple_repeat 1 36 0 * 306 0 0 0 chr1 130751520 130751554 -111912799 + (CA)n Simple_repeat Simple_repeat 1 34 0 398 309 219 4 chr1 130751521 130751678 -111912675 - L2 LINE L2 -130 3142 2924 405 262 364 0 chr1 130752060 130752247 -111912106 + MIR SINE MIR 8 262 0 186 194 69 56 chr1 130752256 130752328 -111912025 - MIR SINE MIR -3 259 187 300 89 22 0 chr1 130753068 130753113 -111911240 + MADE1 DNA Mariner 35 80 0 319 258 245 6 chr1 130753777 130753936 -111910417 - MIR SINE MIR -51 211 15 407 236 230 31 chr1 130754354 130754515 -111909838 + MIR SINE MIR 48 240 -22 345 164 15 0 chr1 130755929 130755996 -111908357 + L1M4 LINE L1 4757 4824 -1322 208 250 130 22 chr1 130756042 130756134 -111908219 - MIR SINE MIR -44 218 117 283 310 70 50 chr1 130756281 130756381 -111907972 + L2 LINE L2 3134 3235 -37 393 318 55 62 chr1 130756392 130756700 -111907653 - MLT1I LTR MaLR -20 389 84 272 350 34 8 chr1 130756926 130757043 -111907310 - MIR SINE MIR -14 248 129 224 366 79 0 chr1 130757652 130757753 -111906600 + MIR SINE MIR 38 146 -62 187 176 0 0 chr1 130757971 130758005 -111906348 + MIR3 SINE MIR 164 197 -11 504 290 84 23 chr1 130758049 130758263 -111906090 + MIR SINE MIR 36 262 0 198 333 133 11 chr1 130759847 130759937 -111904416 + MIR SINE MIR 18 118 -90 220 256 0 33 chr1 130761581 130761671 -111902682 + A-rich Low_complexity Low_complexity 4 90 0 27 29 0 0 chr1 130761878 130761912 -111902441 + AT_rich Low_complexity Low_complexity 1 34 0 2648 112 8 11 chr1 130762069 130762434 -111901919 - THE1B LTR MaLR 0 364 1 11557 99 19 32 chr1 130762435 130764034 -111900319 - THE1B-int LTR MaLR -1 1579 1 1304 150 19 5 chr1 130764034 130764241 -111900112 - THE1B LTR MaLR 0 364 155 1849 123 0 0 chr1 130764241 130764484 -111899869 + AluSx SINE Alu 1 243 -69 429 135 40 0 chr1 130764644 130764718 -111899635 + Alu SINE Alu 225 301 -10 1160 110 6 0 chr1 130764719 130764882 -111899471 - THE1B LTR MaLR -200 164 1 210 309 15 0 chr1 130764883 130764951 -111899402 + MIR SINE MIR 86 154 -108 191 284 30 15 chr1 130765332 130765399 -111898954 - L2 LINE L2 -4 3268 3201 2666 187 74 8 chr1 130765402 130765926 -111898427 - MER68 LTR ERV1 0 562 4 1819 216 15 6 chr1 130768158 130768492 -111895861 + MER58B DNA MER1_type 5 341 0 280 312 138 0 chr1 130768567 130768705 -111895648 - MIR SINE MIR -40 222 66 249 33 0 0 chr1 130770090 130770120 -111894233 + (CCA)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr1 130770119 130770142 -111894211 + (TAA)n Simple_repeat Simple_repeat 2 24 0 * 386 240 182 0 chr1 130770676 130770797 -111893556 - MIR SINE MIR -64 198 56 333 241 165 23 chr1 130771584 130771717 -111892636 - L2 LINE L2 0 3313 3162 222 414 48 7 chr1 130772395 130772540 -111891813 + L2 LINE L2 3082 3232 -40 1516 155 54 34 chr1 130772645 130772962 -111891391 - AluJo SINE Alu 0 312 1 182 103 0 26 chr1 130773313 130773352 -111891001 + (TG)n Simple_repeat Simple_repeat 2 39 0 381 359 53 10 chr1 130773446 130773655 -111890698 - MIR SINE MIR -15 247 30 279 289 205 0 chr1 130773936 130774185 -111890168 - L1ME4a LINE L1 -12 6109 5810 300 309 110 15 chr1 130774206 130774342 -111890011 - L1ME4a LINE L1 -2037 5771 5623 6090 149 16 2 chr1 130775241 130775594 -111888759 - L1PB1 LINE L1 -5 6146 5799 279 0 0 0 chr1 130775594 130775625 -111888728 + (TA)n Simple_repeat Simple_repeat 1 31 0 6090 149 16 2 chr1 130775625 130776645 -111887708 - L1PB1 LINE L1 -352 5799 4753 2033 127 27 0 chr1 130776713 130777005 -111887348 - AluSq SINE Alu -13 300 1 233 231 19 0 chr1 130777320 130777372 -111886981 - MER96B DNA MER1_type? -23 394 342 614 296 42 29 chr1 130780725 130780965 -111883388 + MIR SINE MIR 13 255 -7 294 148 0 0 chr1 130780982 130781036 -111883317 + (TA)n Simple_repeat Simple_repeat 1 54 0 327 253 22 22 chr1 130781045 130781136 -111883217 - L1MC4 LINE L1 -1339 6703 6613 204 333 36 36 chr1 130781289 130781373 -111882980 + L2 LINE L2 3101 3184 -88 210 208 38 0 chr1 130781422 130781475 -111882878 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 1228 199 70 66 chr1 130781589 130781890 -111882463 + AluJb SINE Alu 1 302 0 705 324 104 19 chr1 130781933 130782573 -111881780 + L2 LINE L2 2619 3313 0 1282 200 68 59 chr1 130783733 130784088 -111880265 - MLT1A1 LTR MaLR -4 361 4 1657 149 14 0 chr1 130785506 130785788 -111878565 + L1MC1 LINE L1 5307 5592 -752 225 0 0 0 chr1 130785789 130785814 -111878539 + (TTA)n Simple_repeat Simple_repeat 3 27 0 27907 41 5 0 chr1 130785814 130789929 -111874424 - L1PA4 LINE L1 -18 6137 2008 4037 172 40 12 chr1 130789929 130790657 -111873696 + L1MC1 LINE L1 5586 6333 0 192 140 228 18 chr1 130790657 130790714 -111873639 + MIR SINE MIR 183 251 -11 11370 164 35 24 chr1 130790819 130795642 -111868711 + L1MB8 LINE L1 1 5128 -1734 180 0 0 0 chr1 130795642 130795662 -111868691 + (TAA)n Simple_repeat Simple_repeat 2 21 0 11370 164 35 24 chr1 130795662 130795962 -111868391 + L1MB8 LINE L1 5128 5423 -1439 353 180 16 0 chr1 130795963 130796024 -111868329 - MLT1F LTR MaLR -480 62 1 980 299 51 13 chr1 130796872 130797266 -111867087 + L2 LINE L2 1843 2251 -1063 3301 220 54 20 chr1 130797988 130798733 -111865620 + L1MB8 LINE L1 5664 6467 -427 2192 83 0 0 chr1 130798733 130798997 -111865356 + AluSc SINE Alu 34 297 -12 3301 220 54 20 chr1 130798997 130799441 -111864912 + L1MB8 LINE L1 6467 6894 0 1628 241 42 8 chr1 130799908 130800432 -111863921 + L1M4 LINE L1 2646 3187 -2959 21 0 0 0 chr1 130800479 130800500 -111863853 + AT_rich Low_complexity Low_complexity 1 21 0 437 235 43 91 chr1 130800559 130800746 -111863607 + L1ME2 LINE L1 5952 6129 -35 261 269 0 0 chr1 130802520 130802680 -111861673 + GA-rich Low_complexity Low_complexity 2 161 0 190 235 73 59 chr1 130802910 130802978 -111861375 - MIR SINE MIR -87 121 53 981 214 22 9 chr1 130803437 130803661 -111860692 - MIR SINE MIR -18 244 18 347 261 33 0 chr1 130804344 130804436 -111859917 + MIR SINE MIR 86 180 -82 1333 237 3 0 chr1 130805074 130805407 -111858946 - AluJb SINE Alu 0 334 1 354 239 21 104 chr1 130806193 130806339 -111858014 - MIR SINE MIR -62 146 16 943 100 13 0 chr1 130807834 130807984 -111856369 + (TA)n Simple_repeat Simple_repeat 1 152 0 206 32 32 0 chr1 130807984 130808015 -111856338 + (CA)n Simple_repeat Simple_repeat 1 32 0 486 150 221 68 chr1 130809741 130809991 -111854362 - MER4C LTR ERV1 -20 445 157 1093 146 166 47 chr1 130809994 130810295 -111854058 - MER4A LTR ERV1 -326 338 2 481 230 33 99 chr1 130810303 130810546 -111853807 - MER4A-int LTR ERV1 -2 6596 6405 186 43 0 0 chr1 130810578 130810601 -111853752 + (GA)n Simple_repeat Simple_repeat 2 24 0 1567 313 96 26 chr1 130810935 130811918 -111852435 - MER4C-int LTR ERV1 -439 6683 5633 746 343 31 43 chr1 130812251 130813032 -111851321 - MER4C-int LTR ERV1 -1784 5540 2145 480 325 72 52 chr1 130813531 130814045 -111850308 - MER4C-int LTR ERV1 -2897 3904 3381 479 338 68 30 chr1 130814134 130814872 -111849481 - MER4C-int LTR ERV1 -3802 2999 2549 286 290 31 43 chr1 130814852 130815110 -111849243 - MER4C-int LTR ERV1 -1788 3816 3106 * 271 182 0 0 chr1 130816866 130816910 -111847443 - MER4C-int LTR ERV1 -5804 794 751 272 294 69 73 chr1 130817032 130817236 -111847117 - MER4C-int LTR ERV1 -6182 576 374 670 175 123 47 chr1 130817262 130817771 -111846582 - MER4C-int LTR ERV1 -5926 672 1 527 207 191 42 chr1 130817792 130818039 -111846314 - MER4C LTR ERV1 -18 447 159 1245 154 132 47 chr1 130818044 130818363 -111845990 - MER4A LTR ERV1 -318 346 1 181 239 65 0 chr1 130818365 130818411 -111845942 - MIR SINE MIR -92 170 122 263 261 72 0 chr1 130820405 130820474 -111843879 - Charlie8 DNA MER1_type -2272 145 72 24 0 0 0 chr1 130820659 130820683 -111843670 + AT_rich Low_complexity Low_complexity 1 24 0 368 191 85 32 chr1 130821749 130821843 -111842510 - L1MB7 LINE L1 -1205 4941 4843 3659 214 46 19 chr1 130821844 130823047 -111841306 + L1MB7 LINE L1 4950 6184 0 1558 246 48 4 chr1 130823550 130824054 -111840299 + L1M4 LINE L1 2665 3190 -2956 21 36 0 0 chr1 130824084 130824112 -111840241 + AT_rich Low_complexity Low_complexity 1 28 0 688 221 9 77 chr1 130824187 130824409 -111839944 + L1ME2 LINE L1 5952 6158 -6 186 274 0 0 chr1 130826123 130826225 -111838128 + GA-rich Low_complexity Low_complexity 2 103 0 257 0 30 0 chr1 130826902 130826935 -111837418 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 928 238 21 8 chr1 130827024 130827259 -111837094 - MIR SINE MIR -13 249 12 252 231 46 0 chr1 130827812 130827877 -111836476 + MIR SINE MIR 113 180 -82 1380 195 0 35 chr1 130828524 130828806 -111835547 - AluJb SINE Alu -5 307 36 336 281 0 82 chr1 130829653 130829788 -111834565 - MIR SINE MIR -114 148 25 2122 113 3 46 chr1 130830365 130830692 -111833661 - AluSq SINE Alu 0 313 1 249 33 0 0 chr1 130831456 130831486 -111832867 + (CA)n Simple_repeat Simple_repeat 2 31 0 322 218 51 0 chr1 130833157 130833235 -111831118 - MIR SINE MIR -59 203 122 238 316 91 35 chr1 130835698 130835929 -111828424 - L2 LINE L2 -220 3052 2809 360 119 0 0 chr1 130837058 130837117 -111827236 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 483 71 35 12 chr1 130837479 130837564 -111826789 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 261 191 16 79 chr1 130838217 130838280 -111826073 + MER45 DNA AcHobo 1523 1581 0 326 218 23 23 chr1 130840144 130840231 -111824122 + MER5B DNA MER1_type 1 87 -91 1448 159 55 45 chr1 130840398 130840688 -111823665 + AluJb SINE Alu 16 308 -4 721 328 101 19 chr1 130840751 130841360 -111822993 + L2 LINE L2 2650 3313 0 1350 209 22 92 chr1 130842581 130842939 -111821414 - MLT1A1 LTR MaLR -29 336 4 4730 185 68 8 chr1 130844407 130845379 -111818974 + L1MC1 LINE L1 5297 6333 0 446 220 160 0 chr1 130845505 130845655 -111818698 - L1ME LINE L1 -455 5666 5493 1775 149 0 61 chr1 130845812 130846141 -111818212 - AluSx SINE Alu -2 310 2 1045 286 152 18 chr1 130846191 130846572 -111817781 - MLT1E LTR MaLR -161 432 1 227 330 11 34 chr1 130847073 130847161 -111817192 - L2 LINE L2 -1 3271 3186 953 327 60 45 chr1 130847244 130847798 -111816555 + L2 LINE L2 1690 2251 -1063 314 202 85 21 chr1 130849665 130849759 -111814594 - L1ME LINE L1 -1205 4941 4842 * 3772 219 38 20 chr1 130849757 130850964 -111813389 + L1MB7 LINE L1 4948 6184 0 1307 271 49 19 chr1 130851418 130851610 -111812743 + L1M4 LINE L1 2646 2831 -3315 2479 60 3 0 chr1 130851610 130851908 -111812445 + AluY SINE Alu 11 309 -2 1307 271 49 19 chr1 130851908 130852242 -111812111 + L1M4 LINE L1 2831 3188 -2958 458 307 39 19 chr1 130852368 130852573 -111811780 + L1ME2 LINE L1 5952 6160 -4 180 200 0 0 chr1 130854314 130854354 -111809999 + (TG)n Simple_repeat Simple_repeat 2 41 0 246 219 0 26 chr1 130854355 130854469 -111809884 + GA-rich Low_complexity Low_complexity 2 112 0 195 349 45 0 chr1 130854718 130854784 -111809569 - MIR SINE MIR -87 121 53 948 242 17 9 chr1 130855262 130855493 -111808860 - MIR SINE MIR -18 244 12 354 289 22 16 chr1 130856059 130856187 -111808166 + MIR SINE MIR 63 192 -63 239 309 79 72 chr1 130856472 130856750 -111807603 + L2 LINE L2 2395 2674 -640 1544 214 0 0 chr1 130856797 130857096 -111807257 - AluJb SINE Alu -13 299 1 357 261 22 72 chr1 130857882 130858020 -111806333 - MIR SINE MIR -122 140 10 2781 153 41 101 chr1 130858155 130858816 -111805537 - LTR1 LTR ERV1 0 785 165 2052 138 66 12 chr1 130858816 130859277 -111805076 - HUERS-P2 LTR ERV1 -254 2834 2324 301 276 46 0 chr1 130910973 130911060 -111753293 - MIR SINE MIR -59 203 113 273 261 54 22 chr1 130913027 130913119 -111751234 - Charlie8 DNA MER1_type -2265 152 58 21 0 0 0 chr1 130913293 130913314 -111751039 + AT_rich Low_complexity Low_complexity 1 21 0 336 297 148 31 chr1 130913507 130913736 -111750617 - L2 LINE L2 -210 3062 2807 474 65 0 0 chr1 130914876 130914938 -111749415 + (TGGA)n Simple_repeat Simple_repeat 4 65 0 232 197 16 82 chr1 130915969 130916030 -111748323 + MER45 DNA AcHobo 1524 1580 -1 590 134 134 0 chr1 130916179 130916276 -111748077 + FLAM_A SINE Alu 10 119 -23 381 297 18 0 chr1 130916349 130916460 -111747893 - MIR SINE MIR -59 149 37 375 117 26 13 chr1 130916820 130916897 -111747456 + GA-rich Low_complexity Low_complexity 4 81 0 1122 89 11 6 chr1 130916897 130917076 -111747277 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 301 252 195 24 chr1 130917580 130917703 -111746650 + MIR3 SINE MIR 48 191 -17 243 239 56 0 chr1 130918109 130918180 -111746173 - MIR SINE MIR -70 138 64 3057 114 54 11 chr1 130920279 130920745 -111743608 - LTR19A LTR ERV1 0 486 1 5426 85 28 1 chr1 130920745 130921488 -111742865 - LTR19A-int LTR ERV1 0 5586 4824 * 6502 59 10 0 chr1 130921487 130922297 -111742056 - LTR19A-int LTR ERV1 -967 4619 3802 * 16214 80 34 8 chr1 130922293 130925680 -111738673 - LTR19A-int LTR ERV1 -2052 3534 1 2874 135 65 4 chr1 130925680 130926138 -111738215 - LTR19A LTR ERV1 0 486 1 375 238 12 12 chr1 130926159 130926239 -111738114 + MER5B DNA MER1_type 6 85 -93 1267 214 53 40 chr1 130926398 130926701 -111737652 + AluJb SINE Alu 1 307 -5 693 333 97 20 chr1 130926735 130927384 -111736969 + L2 LINE L2 2619 3313 0 1265 239 16 86 chr1 130928546 130928931 -111735422 - MLT1A1 LTR MaLR -4 361 4 189 0 0 0 chr1 130929908 130929929 -111734424 + (T)n Simple_repeat Simple_repeat 1 21 0 5478 162 37 6 chr1 130930408 130931382 -111732971 + L1MC1 LINE L1 5330 6333 0 394 259 153 0 chr1 130931510 130931691 -111732662 - L1ME LINE L1 -455 5666 5465 1232 268 150 18 chr1 130931849 130932230 -111732123 - MLT1E LTR MaLR -162 431 1 429 168 84 32 chr1 130933582 130933677 -111730676 - L1ME LINE L1 -1205 4941 4842 1269 232 46 4 chr1 130933680 130934213 -111730140 + L1M4 LINE L1 4954 5515 -659 * 44220 46 4 4 chr1 130934204 130940360 -111723993 + L1PA4 LINE L1 2 6155 0 2374 228 40 38 chr1 130940357 130940755 -111723598 + L1MB8 LINE L1 5471 5872 -306 * 1906 123 69 0 chr1 130940755 130941032 -111723321 + AluSx SINE Alu 1 296 -16 2374 228 40 38 chr1 130941032 130941340 -111723013 + L1MB8 LINE L1 5872 6178 0 1564 237 39 39 chr1 130941794 130942233 -111722120 + L1M4 LINE L1 2646 3087 -3059 2190 118 3 0 chr1 130942233 130942530 -111721823 + AluSg SINE Alu 1 298 -12 1564 237 39 39 chr1 130942530 130942634 -111721719 + L1M4 LINE L1 3086 3189 -2957 27 0 0 0 chr1 130942673 130942700 -111721653 + AT_rich Low_complexity Low_complexity 1 27 0 770 252 3 28 chr1 130942748 130942979 -111721374 + L1ME2 LINE L1 5934 6158 -6 419 293 0 0 chr1 130944688 130944828 -111719525 + GA-rich Low_complexity Low_complexity 1 140 0 21 0 0 0 chr1 130944919 130944940 -111719413 + AT_rich Low_complexity Low_complexity 1 21 0 815 243 54 0 chr1 130945617 130945839 -111718514 - MIR SINE MIR -17 245 12 367 293 35 0 chr1 130946514 130946630 -111717723 + MIR SINE MIR 74 193 -69 205 239 68 57 chr1 130946935 130947023 -111717330 + L2 LINE L2 2411 2499 -815 1516 178 9 37 chr1 130947281 130947602 -111716751 - AluJb SINE Alu 0 312 1 343 259 46 46 chr1 130948386 130948517 -111715836 - MIR SINE MIR -122 140 10 255 241 38 0 chr1 130951811 130951890 -111712463 - MIR SINE MIR -59 203 122 1266 208 52 39 chr1 130954597 130954905 -111709448 + AluJb SINE Alu 1 312 0 575 315 118 31 chr1 130954946 130955578 -111708775 + L2 LINE L2 2631 3313 0 6191 72 19 0 chr1 130956270 130957062 -111707291 - L1PA7 LINE L1 0 6469 5663 * 9446 111 1 1 chr1 130957061 130958416 -111705937 - L1PA7 LINE L1 -1422 5039 3685 * 25732 53 1 0 chr1 130958413 130962370 -111701983 + L1PA5 LINE L1 2195 6154 0 10929 109 16 1 chr1 130962370 130963875 -111700478 - L1PA7 LINE L1 -4929 1532 6 986 230 31 97 chr1 130964374 130964757 -111699596 - MLT1A1 LTR MaLR -4 361 4 4906 178 40 30 chr1 130966204 130966608 -111697745 + L1MC1 LINE L1 5307 5706 -627 2258 116 6 0 chr1 130966608 130966919 -111697434 - AluSp SINE Alu 0 313 1 4906 178 40 30 chr1 130966919 130967530 -111696823 + L1MC1 LINE L1 5706 6332 -1 199 156 219 16 chr1 130967531 130967595 -111696758 + MIR SINE MIR 184 260 -2 372 245 159 0 chr1 130967661 130967812 -111696541 - L1ME LINE L1 -455 5666 5492 1087 280 153 16 chr1 130968004 130968376 -111695977 - MLT1E LTR MaLR -170 423 1 879 314 35 61 chr1 130969076 130969617 -111694736 + L2 LINE L2 1725 2251 -1063 347 194 97 32 chr1 130971500 130971593 -111692760 - L1ME LINE L1 -1206 4940 4842 3608 222 36 17 chr1 130971596 130972794 -111691559 + L1MB8 LINE L1 4954 6178 0 1661 253 30 4 chr1 130973258 130973787 -111690566 + L1M4 LINE L1 2646 3188 -2958 567 278 11 6 chr1 130973840 130974016 -111690337 + L1ME2 LINE L1 5988 6164 0 225 183 0 0 chr1 130975763 130975823 -111688530 + GA-rich Low_complexity Low_complexity 2 61 0 2302 107 3 0 chr1 130976018 130976316 -111688037 + AluSg SINE Alu 1 299 -11 894 224 46 9 chr1 130976913 130977132 -111687221 - MIR SINE MIR -18 244 18 228 155 86 0 chr1 130977837 130977895 -111686458 + MIR SINE MIR 103 165 -97 180 244 24 49 chr1 130978269 130978351 -111686002 + L2 LINE L2 2420 2499 -815 1608 190 23 16 chr1 130978588 130978898 -111685455 - AluJb SINE Alu 0 312 1 284 277 22 102 chr1 130979678 130979815 -111684538 - MIR SINE MIR -67 141 16 240 35 0 0 chr1 130980414 130980443 -111683910 + (A)n Simple_repeat Simple_repeat 1 29 0 246 62 0 0 chr1 130981494 130981526 -111682827 + (CA)n Simple_repeat Simple_repeat 2 33 0 242 231 64 13 chr1 130983000 130983078 -111681275 - MIR SINE MIR -59 203 122 346 215 38 0 chr1 130984972 130985051 -111679302 - Charlie8 DNA MER1_type -2266 151 70 26 0 0 0 chr1 130985232 130985258 -111679095 + AT_rich Low_complexity Low_complexity 1 26 0 249 309 88 22 chr1 130985475 130985611 -111678742 - L2 LINE L2 -246 3026 2882 186 71 0 0 chr1 130986826 130986854 -111677499 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 219 69 0 0 chr1 130987354 130987383 -111676970 + (T)n Simple_repeat Simple_repeat 1 29 0 295 211 18 0 chr1 130987897 130987954 -111676399 + MER45 DNA AcHobo 1524 1581 0 507 183 135 0 chr1 130988094 130988198 -111676155 + FLAM_A SINE Alu 3 120 -13 261 222 16 16 chr1 130988274 130988337 -111676016 - MIR SINE MIR -64 144 82 255 285 179 8 chr1 130988735 130988858 -111675495 + MIR3 SINE MIR 48 191 -17 230 225 56 0 chr1 130989266 130989337 -111675016 - MIR SINE MIR -70 138 64 262 259 25 25 chr1 130991456 130991537 -111672816 + MER5B DNA MER1_type 6 86 -92 1305 193 53 40 chr1 130991690 130991990 -111672363 + AluJb SINE Alu 1 304 -8 557 337 59 14 chr1 130992052 130992452 -111671901 + L2 LINE L2 2650 3061 -252 191 225 175 25 chr1 130992527 130992607 -111671746 + MIR SINE MIR 166 257 -5 429 230 162 0 chr1 130992673 130992836 -111671517 - L1ME LINE L1 -455 5666 5482 1044 281 157 19 chr1 130993017 130993387 -111670966 - MLT1E LTR MaLR -172 421 1 734 338 48 18 chr1 130994226 130994623 -111669730 + L2 LINE L2 1843 2251 -1063 22 0 0 0 chr1 130994917 130994939 -111669414 + AT_rich Low_complexity Low_complexity 1 22 0 345 202 85 21 chr1 131046618 131046712 -111617641 - L1ME LINE L1 -1205 4941 4842 * 3331 236 46 17 chr1 131046710 131047900 -111616453 + L1MB8 LINE L1 4948 6178 0 1500 271 24 11 chr1 131048340 131048876 -111615477 + L1M4 LINE L1 2646 3188 -2958 21 0 0 0 chr1 131048922 131048943 -111615410 + AT_rich Low_complexity Low_complexity 1 21 0 601 262 9 72 chr1 131049001 131049222 -111615131 + L1ME2 LINE L1 5952 6158 -6 2519 144 2 23 chr1 131049426 131049864 -111614489 + LTR3 LTR ERVK 1 429 0 386 270 9 0 chr1 131051375 131051490 -111612863 + GA-rich Low_complexity Low_complexity 2 117 0 964 225 17 9 chr1 131052250 131052481 -111611872 - MIR SINE MIR -18 244 12 360 259 45 0 chr1 131053065 131053177 -111611176 + MIR SINE MIR 76 192 -70 204 233 126 10 chr1 131053458 131053561 -111610792 + L2 LINE L2 2385 2499 -815 1628 215 0 0 chr1 131053792 131054094 -111610259 - AluJb SINE Alu -10 302 1 315 292 8 54 chr1 131054864 131054994 -111609359 - MIR SINE MIR -114 148 25 3509 138 50 109 chr1 131055145 131055979 -111608374 - LTR1 LTR ERV1 0 785 1 943 99 12 18 chr1 131056478 131056649 -111607704 + (GAAA)n Simple_repeat Simple_repeat 3 172 0 192 40 0 0 chr1 131057656 131057681 -111606672 + (CA)n Simple_repeat Simple_repeat 2 26 0 211 274 48 65 chr1 131059283 131059407 -111604946 - MIR SINE MIR -19 243 122 209 211 21 63 chr1 131059945 131060040 -111604313 + CT-rich Low_complexity Low_complexity 4 94 0 37275 96 8 12 chr1 131060537 131063738 -111600615 + L1PA6 LINE L1 11 3177 -2977 2849 13 0 0 chr1 131063738 131064043 -111600310 + AluYa5 SINE Alu 1 305 -6 37275 96 8 12 chr1 131064043 131067003 -111597350 + L1PA6 LINE L1 3177 6147 -7 26 0 0 0 chr1 131068161 131068187 -111596166 + AT_rich Low_complexity Low_complexity 1 26 0 237 361 89 12 chr1 131068405 131068574 -111595779 - L2 LINE L2 -246 3026 2845 1950 136 17 7 chr1 131068697 131068992 -111595361 + AluSx SINE Alu 1 298 -14 185 81 0 27 chr1 131069010 131069047 -111595306 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr1 131069991 131070012 -111594341 + AT_rich Low_complexity Low_complexity 1 21 0 273 228 18 0 chr1 131071170 131071227 -111593126 + MER45 DNA AcHobo 1524 1581 0 472 194 146 0 chr1 131071365 131071468 -111592885 + FLAM_A SINE Alu 3 120 -13 280 224 17 0 chr1 131071541 131071599 -111592754 - MIR SINE MIR -61 147 89 310 268 179 8 chr1 131071961 131072084 -111592269 + MIR3 SINE MIR 48 191 -17 216 239 56 0 chr1 131072488 131072559 -111591794 - MIR SINE MIR -70 138 64 246 270 14 27 chr1 131074670 131074744 -111589609 + MER5B DNA MER1_type 6 78 -100 1215 199 58 41 chr1 131074908 131075200 -111589153 + AluJb SINE Alu 5 301 -1 625 329 96 22 chr1 131075234 131075885 -111588468 + L2 LINE L2 2619 3312 -1 2183 102 11 0 chr1 131076360 131076674 -111587679 + AluY SINE Alu 1 317 0 1419 211 22 52 chr1 131077339 131077708 -111586645 - MLT1A1 LTR MaLR -4 361 4 3155 166 48 13 chr1 131079136 131079738 -111584615 + L1MC1 LINE L1 5307 5929 -404 1288 203 115 0 chr1 131079740 131080061 -111584292 + L1MC1 LINE L1 5976 6333 0 351 230 144 46 chr1 131080171 131080345 -111584008 - L1ME LINE L1 -439 5682 5492 1075 286 152 18 chr1 131080534 131080915 -111583438 - MLT1E LTR MaLR -161 432 1 190 327 0 0 chr1 131081415 131081470 -111582883 - L2 LINE L2 0 3313 3259 620 309 56 71 chr1 131081654 131082133 -111582220 + L2 LINE L2 1763 2234 -1080 358 191 85 21 chr1 131084023 131084117 -111580236 - L1ME LINE L1 -1205 4941 4842 * 3436 233 48 14 chr1 131084115 131085306 -111579047 + L1MB7 LINE L1 4948 6184 0 1458 274 24 11 chr1 131085746 131086282 -111578071 + L1M4 LINE L1 2646 3188 -2958 21 0 0 0 chr1 131086328 131086349 -111578004 + AT_rich Low_complexity Low_complexity 1 21 0 571 249 24 84 chr1 131086408 131086621 -111577732 + L1ME2 LINE L1 5952 6151 -13 2488 76 0 0 chr1 131086634 131086936 -111577417 - AluY SINE Alu -9 302 1 373 221 14 0 chr1 131088668 131088813 -111575540 + GA-rich Low_complexity Low_complexity 1 147 0 918 242 17 9 chr1 131089589 131089820 -111574533 - MIR SINE MIR -18 244 12 361 262 29 0 chr1 131090401 131090504 -111573849 + MIR SINE MIR 75 180 -82 1582 197 7 0 chr1 131091130 131091420 -111572933 - AluJb SINE Alu -20 292 1 297 298 8 61 chr1 131092189 131092320 -111572033 - MIR SINE MIR -114 148 25 3486 142 64 103 chr1 131092474 131093291 -111571062 - LTR1 LTR ERV1 0 785 1 22 35 0 0 chr1 131094132 131094161 -111570192 + AT_rich Low_complexity Low_complexity 1 29 0 267 54 0 0 chr1 131094819 131094856 -111569497 + (CA)n Simple_repeat Simple_repeat 2 38 0 2474 63 0 3 chr1 131096192 131096492 -111567861 - AluY SINE Alu -12 299 1 298 240 215 65 chr1 131096793 131096993 -111567360 - MIR SINE MIR -19 243 14 238 209 45 30 chr1 131098903 131098970 -111565383 - Charlie8 DNA MER1_type -2285 132 65 26 0 0 0 chr1 131099146 131099172 -111565181 + AT_rich Low_complexity Low_complexity 1 26 0 316 333 57 25 chr1 131099372 131099531 -111564822 - L2 LINE L2 -227 3045 2882 2159 113 3 3 chr1 131099683 131099992 -111564361 + AluSx SINE Alu 1 309 -3 186 306 63 9 chr1 131100485 131100596 -111563757 + L2 LINE L2 2625 2741 -573 272 179 20 0 chr1 131102089 131102146 -111562207 + MER45 DNA AcHobo 1524 1581 0 505 175 146 0 chr1 131102284 131102387 -111561966 + FLAM_A SINE Alu 3 120 -13 320 212 15 15 chr1 131102459 131102525 -111561828 - MIR SINE MIR -61 147 82 281 309 179 8 chr1 131102936 131103059 -111561294 + MIR3 SINE MIR 48 191 -17 359 232 12 24 chr1 131105661 131105743 -111558610 + MER5B DNA MER1_type 6 86 -92 31 58 0 0 chr1 131109944 131109996 -111554357 + GC_rich Low_complexity Low_complexity 1 52 0 28 29 0 0 chr1 131110228 131110263 -111554090 + GC_rich Low_complexity Low_complexity 1 35 0 2137 99 10 0 chr1 131111244 131111547 -111552806 - AluSg SINE Alu -4 306 1 365 289 29 10 chr1 131112133 131112237 -111552116 - MIR SINE MIR -10 252 147 374 271 54 54 chr1 131113097 131113226 -111551127 - MIR SINE MIR -114 148 20 336 328 66 35 chr1 131113975 131114173 -111550180 + MIR SINE MIR 33 236 -26 21 0 0 0 chr1 131114716 131114737 -111549616 + GC_rich Low_complexity Low_complexity 1 21 0 523 258 140 5 chr1 131115599 131115785 -111548568 - MIR SINE MIR -37 225 15 564 307 93 9 chr1 131116128 131116343 -111548010 + MIR SINE MIR 30 262 0 218 264 186 39 chr1 131116794 131116923 -111547430 + MIR3 SINE MIR 43 190 -18 1121 133 9 55 chr1 131117319 131117537 -111546816 + AluJo SINE Alu 85 292 -20 22 0 0 0 chr1 131118379 131118401 -111545952 + GC_rich Low_complexity Low_complexity 1 22 0 318 267 133 0 chr1 131119750 131119855 -111544498 - MIR3 SINE MIR -35 173 55 1413 176 165 14 chr1 131119980 131120014 -111544339 - MLT2D LTR ERVL -3 411 383 333 0 0 0 chr1 131120014 131120051 -111544302 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr1 131120053 131120074 -111544279 + (GA)n Simple_repeat Simple_repeat 2 22 0 1413 176 165 14 chr1 131120074 131120393 -111543960 - MLT2D LTR ERVL -31 383 1 201 231 108 15 chr1 131120638 131120703 -111543650 + L3b LINE CR1 1299 1369 -214 244 272 0 49 chr1 131120746 131120827 -111543526 + L3 LINE CR1 1500 1576 -1 1271 230 48 48 chr1 131121278 131121778 -111542575 + L1MC5 LINE L1 7404 7903 -58 348 281 39 59 chr1 131123294 131123447 -111540906 - MIR3 SINE MIR -48 160 11 373 66 33 0 chr1 131124602 131124663 -111539690 + (GA)n Simple_repeat Simple_repeat 1 63 0 201 286 127 0 chr1 131125074 131125137 -111539216 + L2 LINE L2 3184 3254 -18 246 337 173 12 chr1 131125161 131125416 -111538937 + L2 LINE L2 1992 2287 -1027 381 333 48 6 chr1 131125524 131125692 -111538661 + MIR SINE MIR 20 194 -68 220 260 120 70 chr1 131125680 131125880 -111538473 + L2 LINE L2 2297 2506 -808 * 1287 199 72 0 chr1 131126256 131126532 -111537821 + AluJo SINE Alu 1 296 -16 543 231 109 19 chr1 131126540 131126696 -111537657 + MIR SINE MIR 29 198 -64 1049 138 140 23 chr1 131128049 131128243 -111536110 + L1MC1 LINE L1 5188 5416 -823 2781 94 11 0 chr1 131128243 131128614 -111535739 + THE1C LTR MaLR 1 375 0 1049 138 140 23 chr1 131128614 131128703 -111535650 + L1MC1 LINE L1 5416 5493 -746 2919 139 27 2 chr1 131128703 131129186 -111535167 + L1MC1 LINE L1 5820 6314 -19 233 283 0 0 chr1 131129347 131129407 -111534946 - L2 LINE L2 -3 3310 3251 448 286 97 49 chr1 131131173 131131398 -111532955 + MIR SINE MIR 24 262 0 225 250 54 0 chr1 131131756 131131812 -111532541 - L2 LINE L2 -4 3268 3210 378 0 0 0 chr1 131132982 131133024 -111531329 + (CA)n Simple_repeat Simple_repeat 2 43 0 531 96 0 0 chr1 131134836 131134919 -111529434 + (GCTG)n Simple_repeat Simple_repeat 2 84 0 2267 82 0 19 chr1 131136050 131136366 -111527987 + AluY SINE Alu 1 310 -1 1588 142 36 18 chr1 131136370 131136651 -111527702 + AluJb SINE Alu 3 288 -24 201 291 96 85 chr1 131137535 131137806 -111526547 - L2 LINE L2 -1435 1879 1606 342 296 70 58 chr1 131138293 131138465 -111525888 + MLT1K LTR MaLR 3 176 -412 625 177 9 9 chr1 131138570 131138683 -111525670 + MLT1K LTR MaLR 466 578 -10 380 253 11 0 chr1 131139225 131139320 -111525033 + MER94 DNA DNA 3 98 -36 597 250 45 102 chr1 131140109 131140353 -111524000 + MLT1K LTR MaLR 1 230 -358 385 269 58 62 chr1 131140439 131140647 -111523706 + MLT1K LTR MaLR 374 580 -8 1655 191 0 22 chr1 131140975 131141289 -111523064 + AluJb SINE Alu 1 307 -5 468 267 154 70 chr1 131141439 131141795 -111522558 + L2 LINE L2 2928 3313 0 332 303 61 6 chr1 131142327 131142492 -111521861 + L1M4 LINE L1 4064 4237 -1909 316 313 30 23 chr1 131142508 131142639 -111521714 - MIR SINE MIR -89 173 42 248 318 143 60 chr1 131142740 131143089 -111521264 - L2 LINE L2 0 3272 2895 276 303 210 17 chr1 131143533 131143652 -111520701 - L2 LINE L2 0 3313 3172 358 263 0 50 chr1 131143707 131143806 -111520547 - MIR SINE MIR -27 235 142 222 171 0 0 chr1 131143853 131143888 -111520465 - MIR SINE MIR -207 55 21 248 356 40 52 chr1 131143981 131144231 -111520122 - L2 LINE L2 -196 3076 2830 334 309 8 32 chr1 131144543 131144669 -111519684 - L2 LINE L2 0 3272 3150 400 222 74 37 chr1 131144731 131144866 -111519487 - MIR3 SINE MIR -49 159 20 385 269 14 50 chr1 131145043 131145184 -111519169 - MIR SINE MIR -50 212 77 854 272 40 0 chr1 131148197 131148447 -111515906 - MIR SINE MIR 0 262 3 180 341 68 23 chr1 131148764 131148852 -111515501 - L2 LINE L2 -89 3183 3092 203 369 56 6 chr1 131148978 131149138 -111515215 - L2 LINE L2 -349 2965 2798 533 259 75 14 chr1 131149250 131149397 -111514956 + MIR SINE MIR 20 175 -87 870 214 124 10 chr1 131149401 131149602 -111514751 - MER58A DNA MER1_type 0 224 1 180 0 0 0 chr1 131150150 131150170 -111514183 + (TC)n Simple_repeat Simple_repeat 2 21 0 2127 136 7 0 chr1 131150170 131150478 -111513875 - AluJo SINE Alu 0 312 3 455 183 98 0 chr1 131152257 131152339 -111512014 + MER81 DNA DNA 1 90 -24 2925 223 57 13 chr1 131153117 131153804 -111510549 - L1ME3A LINE L1 -5 6165 5449 1548 160 0 0 chr1 131153827 131154065 -111510288 + AluJb SINE Alu 1 238 -74 310 91 0 0 chr1 131154131 131154175 -111510178 - Alu SINE Alu -2 300 257 2061 123 3 3 chr1 131154278 131154570 -111509783 - AluSx SINE Alu -18 294 3 606 198 104 0 chr1 131155388 131155494 -111508859 + FAM SINE Alu 43 159 -26 252 0 0 0 chr1 131155494 131155522 -111508831 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2257 103 6 25 chr1 131155525 131155844 -111508509 - AluSq SINE Alu 0 313 1 260 299 0 0 chr1 131156565 131156632 -111507721 - L2 LINE L2 -5 3308 3242 315 239 0 0 chr1 131156947 131157018 -111507335 - L1ME3A LINE L1 -858 5326 5256 1861 165 3 0 chr1 131157063 131157354 -111506999 - AluJb SINE Alu -18 294 3 1403 205 72 8 chr1 131157356 131157722 -111506631 + MER54A LTR ERVL 12 470 -431 430 169 0 0 chr1 131157699 131157770 -111506583 + MER54A LTR ERVL 830 900 -1 * 3562 221 13 2 chr1 131157784 131158570 -111505783 - L1ME3A LINE L1 -907 5239 4446 846 175 0 7 chr1 131158577 131158720 -111505633 + FRAM SINE Alu 34 175 -1 1146 187 50 117 chr1 131158729 131158888 -111505465 - L1ME3A LINE L1 -1702 4444 4276 712 237 0 0 chr1 131158888 131159019 -111505334 - FLAM_C SINE Alu 0 133 3 1146 187 50 117 chr1 131159019 131159277 -111505076 - L1ME3A LINE L1 -1870 4276 4055 279 269 0 43 chr1 131159286 131159379 -111504974 + L1ME4a LINE L1 4745 4833 -1313 2142 164 123 18 chr1 131160445 131160933 -111503420 - LTR64 LTR ERVK -16 542 4 245 271 167 28 chr1 131161242 131161386 -111502967 + L1ME4a LINE L1 5711 5874 -1934 834 169 26 79 chr1 131161453 131161642 -111502711 + MER20 DNA MER1_type 41 219 0 236 254 146 15 chr1 131161644 131161774 -111502579 + L1ME4a LINE L1 5974 6120 -1 206 259 161 12 chr1 131162352 131162433 -111501920 + L2 LINE L2 3171 3263 -9 2587 56 0 0 chr1 131162856 131163158 -111501195 - AluY SINE Alu -9 302 1 382 282 121 17 chr1 131163257 131163431 -111500922 - Charlie8 DNA MER1_type -2178 239 48 1691 192 6 13 chr1 131163477 131163790 -111500563 + AluJo SINE Alu 1 311 -1 2400 214 97 19 chr1 131164833 131165506 -111498847 - MER50 LTR ERV1 0 734 10 1493 183 112 38 chr1 131165521 131165887 -111498466 - MER21B LTR ERV1 -150 713 321 927 140 32 168 chr1 131165915 131166165 -111498188 - MER21B LTR ERV1 -647 216 1 603 252 0 0 chr1 131166700 131166811 -111497542 + FLAM_A SINE Alu 4 114 -19 506 238 40 126 chr1 131167233 131167510 -111496843 + MIR SINE MIR 1 253 -9 1504 188 78 48 chr1 131168039 131168439 -111495914 - MLT2D LTR ERVL -2 412 1 998 189 0 18 chr1 131168530 131168694 -111495659 - FRAM SINE Alu -3 163 3 200 122 0 73 chr1 131169290 131169331 -111495022 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1070 118 85 142 chr1 131169871 131170117 -111494236 + AluJb SINE Alu 1 232 -80 1768 182 3 0 chr1 131170199 131170490 -111493863 - AluJo SINE Alu -20 292 1 367 292 73 10 chr1 131171332 131171524 -111492829 - L1ME4a LINE L1 -209 5912 5709 596 248 74 66 chr1 131171582 131171824 -111492529 - MLT1J1 LTR MaLR 0 446 203 3004 240 62 12 chr1 131171852 131172690 -111491663 - L1ME1 LINE L1 -33 6067 5188 361 283 19 0 chr1 131172717 131172823 -111491530 - L1ME1 LINE L1 -5952 118 11 620 239 22 60 chr1 131172836 131173020 -111491333 - MLT1J1 LTR MaLR -267 179 3 249 143 0 0 chr1 131173174 131173209 -111491144 - MIR SINE MIR -8 254 220 297 297 26 9 chr1 131174958 131175074 -111489279 - MIR SINE MIR -56 152 37 282 216 130 0 chr1 131176158 131176234 -111488119 + MIR SINE MIR 16 103 -105 2242 227 33 96 chr1 131176237 131177135 -111487218 - L1MEc LINE L1 -4580 1816 995 2419 87 0 3 chr1 131177135 131177447 -111486906 - AluSq SINE Alu -2 311 1 2242 227 33 96 chr1 131177447 131177617 -111486736 - L1MEc LINE L1 -5401 995 816 180 77 0 0 chr1 131177617 131177643 -111486710 + (TTA)n Simple_repeat Simple_repeat 3 28 0 38208 88 14 9 chr1 131177643 131179459 -111484894 - L1PA6 LINE L1 -18 6136 4331 2363 80 0 29 chr1 131179459 131179772 -111484581 - AluY SINE Alu -7 304 1 38208 88 14 9 chr1 131179772 131184048 -111480305 - L1PA6 LINE L1 -1823 4331 11 2537 238 95 19 chr1 131184054 131184790 -111479563 - L1MEc LINE L1 -5571 825 34 182 91 30 0 chr1 131185487 131185520 -111478833 + (TA)n Simple_repeat Simple_repeat 2 35 0 347 229 8 92 chr1 131186175 131186306 -111478047 + L2 LINE L2 2858 2977 -337 661 175 178 66 chr1 131186545 131186800 -111477553 + LTR48B LTR ERV1 277 614 -30 1966 160 146 8 chr1 131187090 131187466 -111476887 + MSTA LTR MaLR 1 428 0 10800 112 36 33 chr1 131187466 131189040 -111475313 + MSTA-int LTR MaLR 1 1578 -2 1035 176 124 5 chr1 131189042 131189252 -111475101 + MSTA LTR MaLR 1 235 -193 1619 146 37 4 chr1 131189434 131189702 -111474651 + MER4C LTR ERV1 189 465 0 180 264 85 47 chr1 131190914 131191020 -111473333 + L2 LINE L2 2684 2793 -521 867 312 77 58 chr1 131191024 131191308 -111473045 + MLT1K LTR MaLR 2 279 -309 1886 23 5 0 chr1 131191308 131191523 -111472830 + AluY SINE Alu 94 309 -2 867 312 77 58 chr1 131191523 131191809 -111472544 + MLT1K LTR MaLR 279 583 -5 400 332 111 13 chr1 131191823 131192049 -111472304 + L2 LINE L2 2808 3055 -258 8089 21 3 2 chr1 131192108 131193689 -111470664 + L1PA4 LINE L1 4568 6150 -5 225 0 0 0 chr1 131193742 131193767 -111470586 + (A)n Simple_repeat Simple_repeat 1 25 0 190 214 14 14 chr1 131194037 131194107 -111470246 + CT-rich Low_complexity Low_complexity 4 73 0 22 56 0 0 chr1 131194175 131194211 -111470142 + AT_rich Low_complexity Low_complexity 1 36 0 263 253 161 23 chr1 131194211 131194298 -111470055 + L2 LINE L2 3160 3258 -14 666 295 87 48 chr1 131194329 131194685 -111469668 + L2 LINE L2 2944 3313 0 545 302 0 35 chr1 131194718 131194890 -111469463 - MIR SINE MIR -57 205 40 532 47 0 0 chr1 131194936 131195000 -111469353 - L1PA6 LINE L1 -2 6152 6089 1142 127 6 12 chr1 131196037 131196210 -111468143 - FRAM SINE Alu -6 170 1 199 242 76 30 chr1 131196253 131196319 -111468034 + L2 LINE L2 3240 3308 -5 * 230 289 123 18 chr1 131196316 131196430 -111467923 - L2 LINE L2 -14 3258 3133 266 247 75 62 chr1 131197601 131197656 -111466697 + L2 LINE L2 3166 3219 -94 3730 17 10 2 chr1 131197656 131198066 -111466287 - L1PA3 LINE L1 0 6155 5743 266 247 75 62 chr1 131198066 131198156 -111466197 + L2 LINE L2 3219 3313 0 180 0 0 0 chr1 131198421 131198441 -111465912 + (GGA)n Simple_repeat Simple_repeat 3 22 0 355 171 97 131 chr1 131200948 131201124 -111463229 - MER112 DNA MER1_type -53 207 38 1067 168 6 11 chr1 131201124 131201303 -111463050 + AluJ SINE Alu 1 178 -134 721 113 0 0 chr1 131201360 131201457 -111462896 + AluJ SINE Alu 187 283 -29 568 245 82 25 chr1 131201610 131201806 -111462547 + MER112 DNA MER1_type 1 207 -53 1435 60 0 0 chr1 131203635 131203801 -111460552 + AluSp SINE Alu 147 312 -1 591 312 125 42 chr1 131203801 131204272 -111460081 - L1 LINE L1 -854 5292 4783 502 299 20 7 chr1 131204765 131204912 -111459441 + MIR SINE MIR 34 182 -80 522 237 145 0 chr1 131205141 131205293 -111459060 + MIR SINE MIR 85 258 -4 291 238 69 69 chr1 131205881 131205982 -111458371 + MIR3 SINE MIR 93 193 -15 315 322 198 26 chr1 131205987 131206260 -111458093 - L3b LINE CR1 -11 1572 1253 393 287 60 27 chr1 131206415 131206565 -111457788 - MIR3 SINE MIR -31 177 23 289 301 142 0 chr1 131206948 131207061 -111457292 - L2 LINE L2 0 3272 3144 189 205 205 0 chr1 131207066 131207105 -111457248 - L2 LINE L2 -17 3296 3250 289 79 0 0 chr1 131208038 131208076 -111456277 - tRNA-Gly-GGA tRNA tRNA -37 38 1 1753 142 9 63 chr1 131209139 131209455 -111454898 + AluJb SINE Alu 1 299 -13 225 357 31 62 chr1 131210334 131210463 -111453890 + L2 LINE L2 2986 3110 -162 378 0 0 0 chr1 131212722 131212764 -111451589 + (TG)n Simple_repeat Simple_repeat 2 43 0 3688 113 51 34 chr1 131213895 131214087 -111450266 - LTR43 LTR ERV1 0 602 415 2422 65 3 16 chr1 131214087 131214396 -111449957 + AluY SINE Alu 1 305 -6 3688 113 51 34 chr1 131214396 131214795 -111449558 - LTR43 LTR ERV1 -187 415 1 192 300 80 47 chr1 131215287 131215437 -111448916 + L3b LINE CR1 1293 1447 -136 359 359 132 0 chr1 131216714 131216881 -111447472 + L3 LINE CR1 250 438 -1139 303 360 0 0 chr1 131217146 131217235 -111447118 - L1MC/D LINE L1 -1986 5822 5734 763 311 179 18 chr1 131217237 131217791 -111446562 + L3 LINE CR1 426 1068 -509 350 262 120 15 chr1 131218169 131218302 -111446051 - MIR SINE MIR -68 140 8 1685 177 33 7 chr1 131219870 131220170 -111444183 - AluJb SINE Alu 0 312 5 287 212 139 36 chr1 131220209 131220346 -111444007 - L1ME4a LINE L1 -8 6113 5963 309 331 91 0 chr1 131220414 131220589 -111443764 - MIR3 SINE MIR -13 195 5 249 292 100 33 chr1 131220880 131221000 -111443353 + MIR SINE MIR 108 235 -27 241 255 157 10 chr1 131222618 131222720 -111441633 + MIR SINE MIR 20 136 -126 223 222 83 93 chr1 131222750 131222858 -111441495 + L2 LINE L2 3163 3269 -44 452 250 138 19 chr1 131223313 131223473 -111440880 - MIR SINE MIR -76 186 8 232 348 36 0 chr1 131224399 131224511 -111439842 - L2 LINE L2 0 3313 3198 246 321 150 14 chr1 131227358 131227498 -111436855 + MIR3 SINE MIR 4 162 -46 182 283 54 11 chr1 131227523 131227615 -111436738 + MIR SINE MIR 64 159 -103 180 219 0 0 chr1 131228569 131228601 -111435752 + MIR SINE MIR 117 148 -114 268 282 91 0 chr1 131229750 131229860 -111434493 - MIR3 SINE MIR -79 129 10 240 254 161 34 chr1 131231033 131231151 -111433202 - L2 LINE L2 -8 3264 3132 326 274 159 25 chr1 131231730 131231887 -111432466 + MIR SINE MIR 79 256 -6 1165 149 0 5 chr1 131232396 131232591 -111431762 - L1M2 LINE L1 -714 5598 5405 955 283 43 33 chr1 131232588 131232987 -111431366 + L1MA9 LINE L1 5872 6274 -38 * 244 48 48 0 chr1 131234228 131234270 -111430083 + (TCC)n Simple_repeat Simple_repeat 1 44 0 25 0 0 0 chr1 131234536 131234561 -111429792 + AT_rich Low_complexity Low_complexity 1 25 0 186 220 22 22 chr1 131235874 131235965 -111428388 + CT-rich Low_complexity Low_complexity 4 94 0 1735 123 12 132 chr1 131237904 131238245 -111426108 - AluSx SINE Alu -1 301 2 399 339 119 6 chr1 131238613 131238781 -111425572 - MIR SINE MIR -56 206 20 466 336 66 18 chr1 131239489 131239715 -111424638 + L2 LINE L2 2536 2772 -542 351 0 0 0 chr1 131239949 131239988 -111424365 + (CA)n Simple_repeat Simple_repeat 2 40 0 1554 127 9 112 chr1 131240418 131240599 -111423754 - AluJo SINE Alu -12 300 165 2174 124 0 0 chr1 131240599 131240890 -111423463 - AluSx SINE Alu -14 298 8 1554 127 9 112 chr1 131240890 131241030 -111423323 - AluJo SINE Alu -147 165 12 517 266 118 21 chr1 131241099 131241336 -111423017 - MIR SINE MIR 0 262 3 256 234 54 72 chr1 131241347 131241458 -111422895 - Charlie7 DNA MER1_type -2503 109 1 236 237 0 34 chr1 131241505 131241549 -111422804 + CT-rich Low_complexity Low_complexity 3 46 -13 1615 211 30 0 chr1 131241549 131241848 -111422505 - AluJo SINE Alu -4 308 1 236 237 0 34 chr1 131241848 131241862 -111422491 + CT-rich Low_complexity Low_complexity 46 59 0 318 281 106 56 chr1 131242381 131242541 -111421812 - L1ME4a LINE L1 -197 5924 5757 286 202 83 9 chr1 131242813 131242922 -111421431 - L1ME4a LINE L1 -772 5374 5258 426 341 30 12 chr1 131243337 131243501 -111420852 + L2 LINE L2 3104 3270 -2 324 188 0 0 chr1 131243509 131243573 -111420780 + CT-rich Low_complexity Low_complexity 2 65 0 1704 165 16 29 chr1 131244780 131245095 -111419258 - AluJo SINE Alu -1 311 1 485 242 30 0 chr1 131246597 131246696 -111417657 - L2 LINE L2 -23 3290 3189 419 301 49 18 chr1 131246958 131247121 -111417232 - MIR SINE MIR -77 185 18 642 275 35 6 chr1 131247351 131247522 -111416831 - MIR SINE MIR -40 222 47 299 194 21 7 chr1 131247643 131247787 -111416566 + (TA)n Simple_repeat Simple_repeat 1 146 0 2170 114 3 3 chr1 131248041 131248347 -111416006 + AluY SINE Alu 1 306 -5 706 264 119 10 chr1 131248473 131248776 -111415577 + L1MC4a LINE L1 5527 5862 -1946 392 246 75 80 chr1 131248804 131248966 -111415387 + L1ME4a LINE L1 5924 6121 0 30 27 0 0 chr1 131248966 131249003 -111415350 + AT_rich Low_complexity Low_complexity 1 37 0 224 359 55 39 chr1 131249713 131249841 -111414512 + MIR3 SINE MIR 78 207 -1 220 256 239 17 chr1 131250402 131250519 -111413834 + MIR SINE MIR 51 193 -69 962 276 51 39 chr1 131251261 131251632 -111412721 - L1MEc LINE L1 -3664 2551 2193 2153 63 53 66 chr1 131251632 131251935 -111412418 - AluY SINE Alu -12 299 1 962 276 51 39 chr1 131251935 131252236 -111412117 - L1MEc LINE L1 -4022 2193 1897 229 352 139 0 chr1 131252390 131252498 -111411855 - L2 LINE L2 -16 3256 3134 220 324 0 15 chr1 131252766 131252834 -111411519 - MIR SINE MIR -56 152 86 195 274 0 0 chr1 131255120 131255171 -111409182 - MIR SINE MIR -68 140 90 313 336 58 15 chr1 131256122 131256259 -111408094 - MIR3 SINE MIR -64 144 2 3378 299 127 18 chr1 131256493 131258300 -111406053 + L2 LINE L2 130 2133 -1181 788 240 163 52 chr1 131258351 131258714 -111405639 + MER57B LTR ERV1 1 434 0 202 328 35 0 chr1 131258841 131258899 -111405454 - L2 LINE L2 -45 3227 3168 829 266 37 14 chr1 131258904 131259122 -111405231 - MIR SINE MIR -6 256 34 259 321 46 23 chr1 131260159 131260290 -111404063 - MIR SINE MIR -109 153 20 5306 85 5 1 chr1 131261133 131261791 -111402562 - PABL_A LTR ERV1 0 660 1 2133 123 3 0 chr1 131262763 131263072 -111401281 + AluSx SINE Alu 1 310 -2 365 264 64 0 chr1 131263128 131263268 -111401085 + HAL1 LINE L1 1424 1572 -935 568 282 21 131 chr1 131263461 131263734 -111400619 + L1M4 LINE L1 4281 4582 -1564 842 153 8 15 chr1 131263734 131263865 -111400488 - FLAM_C SINE Alu -2 131 2 568 282 21 131 chr1 131263865 131264179 -111400174 + L1M4 LINE L1 4582 4794 -1352 1923 146 3 22 chr1 131264179 131264495 -111399858 + AluSx SINE Alu 1 310 -2 568 282 21 131 chr1 131264495 131264561 -111399792 + L1M4 LINE L1 4794 4866 -1280 21 57 0 0 chr1 131264919 131264954 -111399399 + AT_rich Low_complexity Low_complexity 1 35 0 211 288 100 12 chr1 131265115 131265195 -111399158 - MIR SINE MIR -87 121 35 2557 40 0 0 chr1 131265250 131265547 -111398806 - AluY SINE Alu -14 297 1 567 218 82 0 chr1 131266629 131266739 -111397614 + MER63A DNA MER1_type 56 174 -36 540 259 0 37 chr1 131267684 131267819 -111396534 + FLAM_A SINE Alu 2 131 -2 1537 219 78 17 chr1 131268309 131268720 -111395633 + L1ME3A LINE L1 5733 6168 -2 670 250 54 54 chr1 131269262 131269538 -111394815 + LTR16C LTR ERVL 216 491 0 1606 242 138 28 chr1 131269618 131270146 -111394207 + MLT1E LTR MaLR 2 587 -6 816 118 24 18 chr1 131270233 131270403 -111393950 + CT-rich Low_complexity Low_complexity 3 173 0 986 174 0 0 chr1 131270405 131270566 -111393787 - FRAM SINE Alu -15 161 1 1196 204 110 38 chr1 131271250 131271569 -111392784 - MER2 DNA MER2_type -2 342 1 367 278 38 30 chr1 131272494 131272627 -111391726 - MIR SINE MIR -55 153 20 6745 35 0 0 chr1 131272733 131273496 -111390857 - MER11D LTR ERVK 0 897 135 25 0 0 0 chr1 131273543 131273568 -111390785 + AT_rich Low_complexity Low_complexity 1 25 0 1673 122 0 8 chr1 131273568 131273815 -111390538 - L1MA2 LINE L1 -7 6297 6053 810 189 17 39 chr1 131273841 131274021 -111390332 - FRAM SINE Alu 0 176 1 793 195 11 17 chr1 131274027 131274201 -111390152 - L1MA10 LINE L1 0 6334 6162 1060 250 134 30 chr1 131274838 131275414 -111388939 - HAL1b LINE L1 0 1348 713 956 271 78 15 chr1 131275454 131275849 -111388504 - HAL1b LINE L1 -839 509 90 309 165 89 38 chr1 131276245 131276280 -111388073 + LTR37A LTR ERV1 8 40 -386 2133 114 27 0 chr1 131276280 131276578 -111387775 - AluSx SINE Alu -6 306 1 309 165 89 38 chr1 131276578 131276621 -111387732 + LTR37A LTR ERV1 40 90 -336 277 243 71 0 chr1 131277393 131277463 -111386890 - MIR SINE MIR -10 252 178 185 344 53 53 chr1 131277633 131277764 -111386589 + L2 LINE L2 2022 2152 -1162 544 337 64 27 chr1 131277806 131277993 -111386360 + MER91A DNA MER1_type 3 196 0 449 319 127 53 chr1 131277996 131278428 -111385925 + MLT1K LTR MaLR 111 574 -14 611 219 50 78 chr1 131278465 131278707 -111385646 + L2 LINE L2 3073 3307 -6 34 42 0 0 chr1 131278953 131279001 -111385352 + AT_rich Low_complexity Low_complexity 1 48 0 2254 63 0 4 chr1 131279268 131279537 -111384816 - AluY SINE Alu -33 278 11 2110 176 65 23 chr1 131281295 131281692 -111382661 + MLT2D LTR ERVL 1 414 0 502 264 34 7 chr1 131282645 131282793 -111381560 - MIR SINE MIR -109 153 2 254 337 0 20 chr1 131283471 131283569 -111380784 - MER5B DNA MER1_type -61 117 22 377 368 6 12 chr1 131283623 131283786 -111380567 - L3 LINE CR1 -106 1471 1310 1115 199 5 9 chr1 131284219 131284430 -111379923 + MER20 DNA MER1_type 4 213 -6 489 240 20 0 chr1 131284709 131284859 -111379494 - MER113 DNA MER1_type? -368 153 1 270 0 0 0 chr1 131285923 131285953 -111378400 + (CA)n Simple_repeat Simple_repeat 2 31 0 465 220 43 57 chr1 131286561 131286702 -111377651 + MIR3 SINE MIR 6 144 -64 559 211 6 80 chr1 131286751 131286926 -111377427 - MER104 DNA Tc2 -4 176 15 192 259 36 116 chr1 131288000 131288112 -111376241 - MIR SINE MIR -72 136 34 276 258 297 13 chr1 131288365 131288520 -111375833 - MIR SINE MIR -17 245 47 190 186 171 43 chr1 131288678 131288748 -111375605 + MIR SINE MIR 28 106 -156 290 331 52 15 chr1 131289281 131289417 -111374936 + L2 LINE L2 3132 3272 0 1880 157 117 27 chr1 131289715 131290091 -111374262 + ERVL LTR ERVL 1778 2187 -3577 276 28 56 0 chr1 131290117 131290153 -111374200 + ERVL LTR ERVL 2168 2205 -3559 257 324 11 22 chr1 131291219 131291398 -111372955 + CT-rich Low_complexity Low_complexity 1 177 0 223 191 159 0 chr1 131291479 131291542 -111372811 - MIR SINE MIR -73 135 63 407 309 10 10 chr1 131292090 131292361 -111371992 + CT-rich Low_complexity Low_complexity 1 271 0 1630 132 0 37 chr1 131292474 131292747 -111371606 - AluJb SINE Alu -49 263 1 641 267 99 35 chr1 131292752 131292984 -111371369 - MIR SINE MIR -8 254 8 237 345 29 29 chr1 131293030 131293169 -111371184 - MIR SINE MIR -65 197 59 666 302 0 40 chr1 131293280 131293502 -111370851 + MIR SINE MIR 45 257 -5 3597 261 63 46 chr1 131294297 131295876 -111368477 - L1M4c LINE L1 -4517 1374 28 222 128 0 0 chr1 131296709 131296748 -111367605 + (TG)n Simple_repeat Simple_repeat 1 39 0 2481 81 0 0 chr1 131298785 131299094 -111365259 - AluY SINE Alu -2 309 1 639 200 36 36 chr1 131299182 131299347 -111365006 - MIR SINE MIR -30 232 68 2050 173 11 14 chr1 131299443 131299813 -111364540 - L1MB2 LINE L1 -3 6168 5800 332 191 67 22 chr1 131301114 131301203 -111363150 - MIR3 SINE MIR -53 155 63 409 328 98 41 chr1 131301523 131301892 -111362461 - L1MB2 LINE L1 -2154 5654 5265 36 53 0 0 chr1 131301969 131302026 -111362327 + AT_rich Low_complexity Low_complexity 1 57 0 2157 118 10 3 chr1 131302607 131302912 -111361441 + AluSx SINE Alu 1 307 -5 387 305 42 0 chr1 131302955 131303073 -111361280 - MIR SINE MIR -120 142 20 205 353 17 9 chr1 131303932 131304048 -111360305 - MIR SINE MIR -114 148 32 499 331 27 0 chr1 131304223 131304371 -111359982 - MIR3 SINE MIR -27 181 30 2586 90 23 0 chr1 131305121 131305465 -111358888 - L1PB1 LINE L1 -1 6150 5799 328 290 20 0 chr1 131305465 131305565 -111358788 + HAL1 LINE L1 1539 1640 -867 27 73 0 0 chr1 131305696 131305751 -111358602 + AT_rich Low_complexity Low_complexity 1 55 0 192 356 82 7 chr1 131308373 131308508 -111355845 - L2 LINE L2 -567 2747 2603 361 277 14 50 chr1 131308544 131308685 -111355668 - MIR SINE MIR -1 261 126 275 352 137 11 chr1 131309079 131309619 -111354734 - L2 LINE L2 -1000 2314 1707 2085 214 30 9 chr1 131310440 131310721 -111353632 + L1MA10 LINE L1 5863 6159 -175 261 0 0 0 chr1 131310721 131310750 -111353603 + (CA)n Simple_repeat Simple_repeat 2 30 0 2085 214 30 9 chr1 131310750 131310930 -111353423 + L1MA10 LINE L1 6159 6334 0 706 172 17 0 chr1 131310992 131311108 -111353245 + FLAM_C SINE Alu 1 118 -15 966 128 34 145 chr1 131311483 131311659 -111352694 + MER3 DNA MER1_type 2 147 -62 2221 85 3 24 chr1 131311659 131311954 -111352399 - AluSc SINE Alu -20 289 1 966 128 34 145 chr1 131311954 131312011 -111352342 + MER3 DNA MER1_type 147 209 0 288 148 66 0 chr1 131312089 131312150 -111352203 - L1P5 LINE L1 -705 5451 5387 1095 285 80 6 chr1 131312507 131313000 -111351353 + L1ME LINE L1 5221 5758 -404 8162 204 48 42 chr1 131313137 131314863 -111349490 + MLT1A1-int LTR MaLR 1 1735 0 1705 189 37 31 chr1 131314863 131315218 -111349135 + MLT1A1 LTR MaLR 1 357 -8 564 310 102 15 chr1 131315466 131315801 -111348552 - MER57B LTR ERV1 0 434 71 12739 153 22 9 chr1 131315812 131317900 -111346453 - L1M1 LINE L1 -3911 2937 828 2134 209 63 63 chr1 131317900 131318454 -111345899 + MLT2B3 LTR ERVL 1 554 0 12739 153 22 9 chr1 131318454 131318479 -111345874 - L1M1 LINE L1 -6020 828 805 1035 188 0 0 chr1 131320673 131320843 -111343510 - FRAM SINE Alu -1 175 6 463 262 99 54 chr1 131320863 131321157 -111343196 + L1ME3 LINE L1 5589 5915 -247 225 256 184 31 chr1 131321426 131321649 -111342704 - MIR SINE MIR -2 260 4 306 0 0 0 chr1 131322097 131322131 -111342222 + (CA)n Simple_repeat Simple_repeat 1 34 0 2238 275 21 41 chr1 131322713 131323143 -111341210 - L1M4 LINE L1 -1290 4856 4419 2046 143 3 0 chr1 131323143 131323443 -111340910 - AluY SINE Alu -10 301 1 2238 275 21 41 chr1 131323443 131324026 -111340327 - L1M4 LINE L1 -1727 4419 3864 29 0 0 0 chr1 131324027 131324056 -111340297 + AT_rich Low_complexity Low_complexity 1 29 0 285 247 11 0 chr1 131324099 131324188 -111340165 - L1MA10 LINE L1 -4 6330 6241 305 204 41 51 chr1 131324220 131324318 -111340035 - L1MEc LINE L1 -3406 2809 2713 365 297 107 42 chr1 131324808 131325071 -111339282 - L1MEc LINE L1 -5988 408 129 1849 225 78 31 chr1 131325176 131325799 -111338554 + MLT1E3 LTR MaLR 1 624 0 304 284 0 0 chr1 131326487 131326561 -111337792 - LTR16B LTR ERVL -390 74 1 578 260 52 23 chr1 131326581 131326754 -111337599 - ERVL LTR ERVL -3761 2003 1826 329 377 9 9 chr1 131326942 131327162 -111337191 - ERVL LTR ERVL -3549 1447 1228 605 229 99 51 chr1 131327200 131327465 -111336888 - LTR33 LTR ERVL -248 275 29 267 245 112 12 chr1 131328172 131328264 -111336089 - MIR SINE MIR -67 141 47 1846 164 7 0 chr1 131328461 131328748 -111335605 - AluJo SINE Alu -12 300 12 185 62 0 31 chr1 131328765 131328797 -111335556 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 186 133 0 0 chr1 131328840 131328870 -111335483 + (TTA)n Simple_repeat Simple_repeat 1 30 0 3511 206 49 34 chr1 131328873 131329969 -111334384 - L1MB7 LINE L1 -26 6158 5042 237 341 93 0 chr1 131330608 131330737 -111333616 - MIR SINE MIR -73 189 49 1154 279 36 57 chr1 131331045 131331249 -111333104 - L1ME3 LINE L1 -1 6161 5954 2847 164 2 2 chr1 131331249 131331681 -111332672 - MSTB1 LTR MaLR 0 432 1 1154 279 36 57 chr1 131331681 131331736 -111332617 - L1ME3 LINE L1 -208 5954 5899 1888 122 38 3 chr1 131331736 131332023 -111332330 + AluSx SINE Alu 1 297 -15 1154 279 36 57 chr1 131332023 131332340 -111332013 - L1ME3 LINE L1 -263 5899 5596 3138 72 0 5 chr1 131332495 131332898 -111331455 + L1P3 LINE L1 5326 5726 -428 2249 98 7 7 chr1 131334527 131334834 -111329519 - AluY SINE Alu -4 307 1 262 308 113 112 chr1 131336497 131337088 -111327265 + L2 LINE L2 2662 3272 0 378 148 23 11 chr1 131337336 131337424 -111326929 + (TA)n Simple_repeat Simple_repeat 2 90 0 269 302 28 93 chr1 131337448 131337663 -111326690 - L2 LINE L2 -2775 539 339 602 304 126 65 chr1 131337942 131338585 -111325768 - L2 LINE L2 -3 3269 2572 229 274 0 41 chr1 131339137 131339210 -111325143 + CT-rich Low_complexity Low_complexity 4 73 0 265 288 0 0 chr1 131339334 131339400 -111324953 + tRNA-Ile-ATT tRNA tRNA 7 72 -5 440 259 7 82 chr1 131339703 131339817 -111324536 + MIR3 SINE MIR 54 156 -52 203 30 0 61 chr1 131339817 131339850 -111324503 + (ATTAG)n Simple_repeat Simple_repeat 2 32 0 440 259 7 82 chr1 131339850 131339882 -111324471 + MIR3 SINE MIR 156 189 -19 594 316 92 41 chr1 131339886 131340449 -111323904 - L2 LINE L2 -39 3233 2636 307 375 47 0 chr1 131341726 131341854 -111322499 + L2 LINE L2 3133 3266 -6 504 215 127 38 chr1 131341938 131342096 -111322257 - MIR SINE MIR -83 179 8 333 204 71 44 chr1 131345649 131345762 -111318591 + MIR SINE MIR 90 205 -57 341 281 49 38 chr1 131348244 131348429 -111315924 + LTR33 LTR ERVL 335 521 0 610 206 131 12 chr1 131354540 131354755 -111309598 - MER106B DNA MER1_type 0 1059 2 204 250 0 92 chr1 131354821 131355017 -111309336 + A-rich Low_complexity Low_complexity 3 180 0 203 152 0 0 chr1 131356053 131356086 -111308267 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2272 223 32 15 chr1 131358149 131358995 -111305358 - L1ME LINE L1 -354 5812 4960 2326 79 0 0 chr1 131360249 131360539 -111303814 - AluY SINE Alu -3 308 19 1269 129 32 5 chr1 131361629 131361846 -111302507 + L1PA12 LINE L1 5824 6046 -122 292 284 42 72 chr1 131362747 131363078 -111301275 + L1PA8A LINE L1 5480 5800 -331 * 1966 220 135 14 chr1 131362806 131363369 -111300984 + L1ME2 LINE L1 5524 6154 -10 2239 264 68 25 chr1 131363854 131364846 -111299507 + L1M4 LINE L1 2913 3947 -2199 2024 151 3 0 chr1 131365789 131366088 -111298265 - AluSx SINE Alu -12 300 1 903 241 10 24 chr1 131366428 131366635 -111297718 + MER3 DNA MER1_type 5 208 -1 376 119 17 0 chr1 131367577 131367636 -111296717 + MER53 DNA DNA 5 64 -125 271 191 63 0 chr1 131367640 131367703 -111296650 + L1MD1 LINE L1 6170 6236 -6 193 270 90 67 chr1 131368042 131368131 -111296222 - MIR SINE MIR -155 107 17 326 285 23 46 chr1 131368710 131368840 -111295513 - MIR3 SINE MIR -70 138 12 5158 41 0 1 chr1 131369458 131370198 -111294155 - L1PA4 LINE L1 -297 5858 5120 224 294 0 0 chr1 131370269 131370320 -111294033 + polypyrimidine Low_complexity Low_complexity 4 54 0 1823 224 47 9 chr1 131370483 131370870 -111293483 - L1ME3 LINE L1 -2 6160 5752 450 0 0 0 chr1 131370870 131370920 -111293433 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1823 224 47 9 chr1 131370920 131370983 -111293370 - L1ME3 LINE L1 -410 5752 5693 1192 126 0 33 chr1 131370983 131371166 -111293187 - L1PA8A LINE L1 0 6131 5955 6825 112 1 0 chr1 131371166 131372135 -111292218 - L1P LINE L1 -1380 4766 3797 8148 117 14 1 chr1 131372142 131373335 -111291018 - L1P3 LINE L1 -4734 2264 1030 874 183 0 0 chr1 131373345 131373487 -111290866 + L1PBa LINE L1 302 443 -6420 924 234 51 5 chr1 131373487 131373701 -111290652 - L1ME3 LINE L1 -461 5703 5480 4518 159 4 46 chr1 131373803 131373950 -111290403 + L1MB3 LINE L1 5182 5334 -849 3143 163 42 22 chr1 131373950 131374546 -111289807 + L1MA8 LINE L1 5684 6291 0 4518 159 4 46 chr1 131374546 131375276 -111289077 + L1MB3 LINE L1 5334 6040 -143 665 197 22 110 chr1 131375426 131375595 -111288758 + L1MB3 LINE L1 5972 6118 -65 2130 83 14 0 chr1 131375595 131375873 -111288480 + AluY SINE Alu 1 282 -29 665 197 22 110 chr1 131375873 131375931 -111288422 + L1MB3 LINE L1 6118 6179 -4 358 304 0 0 chr1 131375989 131376081 -111288272 + MIR3 SINE MIR 93 184 -24 597 257 62 26 chr1 131376110 131376336 -111288017 + MIR SINE MIR 8 241 -21 1754 115 4 15 chr1 131376375 131376636 -111287717 + AluSg SINE Alu 40 297 -13 274 280 180 30 chr1 131377518 131377618 -111286735 + L2 LINE L2 3197 3311 -2 2154 218 107 17 chr1 131378415 131378993 -111285360 - L1ME2 LINE L1 -10 6154 5525 206 306 48 0 chr1 131379954 131380016 -111284337 - MIR3 SINE MIR -6 202 138 282 291 16 16 chr1 131380541 131380668 -111283685 - L1MEc LINE L1 -4993 1391 1265 384 255 137 54 chr1 131380692 131380896 -111283457 - L1MEc LINE L1 -5187 1376 1156 330 303 76 0 chr1 131380899 131381044 -111283309 - L1MEc LINE L1 -5449 1114 959 1085 232 53 43 chr1 131381309 131381389 -111282964 + L1M4 LINE L1 4861 4939 -1207 5116 83 28 15 chr1 131381389 131382076 -111282277 + L1PA11 LINE L1 5477 6172 -2 1085 232 53 43 chr1 131382076 131382388 -111281965 + L1M4 LINE L1 4939 5257 -889 729 264 15 5 chr1 131382388 131382589 -111281764 + MLT2B1 LTR ERVL 1 203 -317 296 66 44 165 chr1 131382622 131382713 -111281640 + LTR66 LTR ERVL 359 438 -172 267 31 0 0 chr1 131382713 131382745 -111281608 + (CA)n Simple_repeat Simple_repeat 1 32 0 602 287 73 59 chr1 131384163 131384686 -111279667 + L1MC4 LINE L1 7098 7627 -415 2097 92 0 37 chr1 131387173 131387495 -111276858 + AluY SINE Alu 1 311 0 2107 133 0 3 chr1 131388154 131388523 -111275830 + AluSx SINE Alu 6 373 0 306 170 71 89 chr1 131392153 131392265 -111272088 + L1MB5 LINE L1 6056 6165 -9 411 293 7 14 chr1 131393209 131393356 -111270997 - MIR SINE MIR -21 241 96 1954 150 10 0 chr1 131393506 131393813 -111270540 - AluSg SINE Alu 0 310 1 205 214 126 39 chr1 131393881 131393984 -111270369 + L2 LINE L2 3160 3271 -1 267 282 26 13 chr1 131396155 131396233 -111268120 - MIR3 SINE MIR -48 160 82 587 286 106 30 chr1 131397896 131398573 -111265780 - L1ME LINE L1 -571 5593 4862 2024 62 4 0 chr1 131398602 131398843 -111265510 + L1PA6 LINE L1 5909 6150 -4 1040 285 103 4 chr1 131399673 131400157 -111264196 - L1ME LINE L1 -1286 4860 4329 1138 292 42 16 chr1 131400182 131400631 -111263722 - L1ME2 LINE L1 -13 6151 5691 2376 76 3 17 chr1 131400632 131401198 -111263155 + PABL_A LTR ERV1 1 660 0 320 250 185 0 chr1 131401198 131401306 -111263047 - L1ME2 LINE L1 -476 5690 5563 631 129 10 0 chr1 131602527 131602628 -111061725 + MER41E LTR ERV1 1 102 -410 23 0 0 0 chr1 131603152 131603175 -111061178 + AT_rich Low_complexity Low_complexity 1 23 0 209 148 0 19 chr1 131603702 131603756 -111060597 + (TA)n Simple_repeat Simple_repeat 2 54 0 437 276 110 18 chr1 131603777 131604005 -111060348 - L1MC/D LINE L1 -2306 5502 5254 304 269 62 34 chr1 131605397 131605521 -111058832 + MIR SINE MIR 4 133 -75 225 309 74 12 chr1 131605526 131605607 -111058746 - MIR3 SINE MIR -109 99 14 249 268 0 18 chr1 131605744 131605800 -111058553 + L2 LINE L2 3247 3301 -12 695 284 40 27 chr1 131606770 131606995 -111057358 - L3 LINE CR1 -23 1554 1327 303 316 10 0 chr1 131607275 131607373 -111056980 - MER5B DNA MER1_type -79 99 1 218 255 51 61 chr1 131608433 131608531 -111055822 - L2 LINE L2 -49 3264 3168 2140 146 0 0 chr1 131610785 131611094 -111053259 + AluSg SINE Alu 1 309 -1 4737 52 0 5 chr1 131612378 131612973 -111051380 + L1PA8 LINE L1 5576 6167 -5 1776 83 0 4 chr1 131613260 131613488 -111050865 + AluY SINE Alu 79 305 -6 400 304 50 53 chr1 131614671 131614961 -111049392 - L1MEc LINE L1 -5333 808 466 439 306 117 49 chr1 131615154 131615582 -111048771 - L1MEc LINE L1 -5596 474 18 22 56 0 0 chr1 131615776 131615812 -111048541 + AT_rich Low_complexity Low_complexity 1 36 0 943 189 59 0 chr1 131616697 131616919 -111047434 + MER96B DNA MER1_type? 1 235 -182 181 307 93 13 chr1 131617112 131617187 -111047166 + MIR3 SINE MIR 88 168 -40 5111 131 23 62 chr1 131617607 131617707 -111046646 + L1PA16 LINE L1 5222 5324 -842 1940 149 7 0 chr1 131617707 131618014 -111046339 + AluSx SINE Alu 1 309 0 5111 131 23 62 chr1 131618014 131618190 -111046163 + L1PA16 LINE L1 5324 5505 -661 2187 130 0 0 chr1 131618190 131618489 -111045864 + AluSx SINE Alu 1 299 -13 5111 131 23 62 chr1 131618489 131619168 -111045185 + L1PA16 LINE L1 5505 6157 -9 23 0 0 0 chr1 131619168 131619191 -111045162 + AT_rich Low_complexity Low_complexity 1 23 0 2368 83 10 13 chr1 131619191 131619505 -111044848 + AluSq SINE Alu 1 313 0 4135 163 51 31 chr1 131620186 131621716 -111042637 - L1MB7 LINE L1 0 6184 4635 254 312 75 5 chr1 131622379 131622565 -111041788 + L1ME4a LINE L1 5570 5768 -353 768 265 15 15 chr1 131622604 131622800 -111041553 + L2 LINE L2 2517 2712 -602 5560 146 19 14 chr1 131622801 131624304 -111040049 + L1PB3 LINE L1 4643 6152 -2 1246 258 83 34 chr1 131624315 131624904 -111039449 + L2 LINE L2 2699 3313 0 634 242 101 63 chr1 131624982 131625218 -111039135 + MIR SINE MIR 4 252 -10 21 0 0 0 chr1 131625304 131625325 -111039028 + AT_rich Low_complexity Low_complexity 1 21 0 524 261 75 6 chr1 131625368 131625529 -111038824 + MIR3 SINE MIR 29 200 -8 186 306 180 0 chr1 131626499 131626610 -111037743 - MIR3 SINE MIR -16 192 62 2111 117 3 29 chr1 131626756 131627065 -111037288 + AluSg SINE Alu 1 301 -9 603 234 54 29 chr1 131627175 131627384 -111036969 + MIR SINE MIR 8 216 -46 428 303 81 4 chr1 131627394 131627567 -111036786 - MIR SINE MIR -17 191 8 269 227 168 25 chr1 131627956 131628075 -111036278 + Charlie7 DNA MER1_type 5 140 -2472 349 243 44 88 chr1 131628723 131628859 -111035494 + MIR3 SINE MIR 58 187 -21 243 292 81 19 chr1 131629051 131629212 -111035141 + L1ME4a LINE L1 5855 6025 -96 36 62 0 0 chr1 131629257 131629321 -111035032 + AT_rich Low_complexity Low_complexity 1 64 0 200 344 8 56 chr1 131629516 131629641 -111034712 + MIR3 SINE MIR 83 201 -7 956 282 74 58 chr1 131629873 131630320 -111034033 + LTR67 LTR ERVL 101 554 -3 1127 245 55 56 chr1 131630561 131630641 -111033712 - L1MC4a LINE L1 -866 5468 5389 1815 165 10 0 chr1 131630641 131630944 -111033409 - AluJo SINE Alu -6 306 1 1127 245 55 56 chr1 131630944 131631099 -111033254 - L1MC4a LINE L1 -945 5389 5675 689 100 60 0 chr1 131631099 131631199 -111033154 - U6 snRNA snRNA 0 107 2 1127 245 55 56 chr1 131631199 131631602 -111032751 - L1MC4a LINE L1 -658 5676 5274 336 120 0 22 chr1 131631606 131631684 -111032669 - Alu SINE Alu 0 302 243 1995 118 0 91 chr1 131631689 131632019 -111032334 - AluSx SINE Alu -12 300 1 265 203 109 0 chr1 131632277 131632341 -111032012 + HAL1 LINE L1 1 71 -2436 266 211 97 35 chr1 131632347 131632461 -111031892 - L1MC4a LINE L1 -1644 6164 6044 1257 221 75 55 chr1 131632550 131632632 -111031721 + HAL1 LINE L1 85 164 -2343 2149 103 0 24 chr1 131632632 131632947 -111031406 + AluSx SINE Alu 1 308 0 1257 221 75 55 chr1 131632947 131633316 -111031037 + HAL1 LINE L1 164 546 -1961 477 224 118 16 chr1 131633425 131633671 -111030682 + HAL1 LINE L1 910 1180 -1327 1090 264 97 20 chr1 131633676 131634017 -111030336 - LTR16C LTR ERVL -47 444 78 2237 239 117 24 chr1 131634077 131634838 -111029515 + HAL1 LINE L1 1666 2497 -10 25 65 0 0 chr1 131635306 131635352 -111029001 + AT_rich Low_complexity Low_complexity 1 46 0 836 306 101 61 chr1 131635506 131636573 -111027780 + L2 LINE L2 1603 3313 0 579 296 109 9 chr1 131636596 131636745 -111027608 - MIR SINE MIR -19 243 64 2813 152 19 6 chr1 131636745 131637258 -111027095 + L1MC1 LINE L1 5814 6333 0 579 296 109 9 chr1 131637258 131637328 -111027025 - MIR SINE MIR -198 64 2 2430 173 11 17 chr1 131637782 131638250 -111026103 + MLT1C LTR MaLR 1 465 -2 309 278 34 80 chr1 131638315 131638491 -111025862 + L1ME4a LINE L1 5935 6102 -19 1745 142 103 16 chr1 131638499 131638809 -111025544 - MER1B DNA MER1_type 0 337 1 311 184 29 0 chr1 131638820 131638896 -111025457 + MIR SINE MIR 111 188 -74 418 268 43 65 chr1 131639784 131640015 -111024338 + L1ME4a LINE L1 5831 6056 -65 267 323 24 47 chr1 131640691 131640818 -111023535 + MIR SINE MIR 29 152 -56 2063 128 27 0 chr1 131641008 131641305 -111023048 + AluSx SINE Alu 1 305 -7 725 283 21 34 chr1 131641437 131641674 -111022679 + MIR SINE MIR 1 234 -28 212 329 133 35 chr1 131642676 131642819 -111021534 - L2 LINE L2 -5 3267 3111 2079 81 67 7 chr1 131642884 131643167 -111021186 - AluY SINE Alu -11 300 1 397 241 25 0 chr1 131643167 131643246 -111021107 - L2 LINE L2 -10 3303 3223 222 37 0 0 chr1 131643740 131643767 -111020586 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1801 158 3 7 chr1 131643767 131644051 -111020302 - AluJb SINE Alu -27 285 3 292 307 151 44 chr1 131644310 131644515 -111019838 + MIR SINE MIR 23 249 -13 * 370 354 28 7 chr1 131644500 131644644 -111019709 - MIR3 SINE MIR -32 176 30 254 384 32 0 chr1 131645163 131645288 -111019065 + MIR3 SINE MIR 14 142 -66 433 339 83 0 chr1 131645341 131645509 -111018844 - MIR SINE MIR -78 184 3 192 231 0 0 chr1 131645809 131645861 -111018492 + (CA)n Simple_repeat Simple_repeat 1 52 0 240 262 65 37 chr1 131646598 131646705 -111017648 + MIR SINE MIR 143 252 -10 201 348 72 0 chr1 131646749 131646818 -111017535 - MIR SINE MIR -107 101 28 243 332 105 58 chr1 131647013 131647338 -111017015 + L2 LINE L2 2896 3235 -37 2098 113 10 0 chr1 131648436 131648728 -111015625 - AluSx SINE Alu -17 295 1 219 225 51 70 chr1 131648731 131648903 -111015450 - MIR SINE MIR -25 237 76 605 269 55 24 chr1 131649205 131649458 -111014895 - MIR SINE MIR 0 262 2 963 127 87 0 chr1 131649673 131649846 -111014507 + MER20 DNA MER1_type 28 215 -4 265 325 39 31 chr1 131650336 131650584 -111013769 + Charlie4 DNA MER1_type 579 828 -1133 619 321 72 7 chr1 131650584 131650877 -111013476 - MLT1I LTR MaLR 0 409 98 494 338 33 36 chr1 131651096 131651398 -111012955 - L2 LINE L2 -803 2511 2211 394 231 14 157 chr1 131651417 131651519 -111012834 - MIR SINE MIR -12 250 135 414 0 0 0 chr1 131651519 131651565 -111012788 + (TA)n Simple_repeat Simple_repeat 1 46 0 394 231 14 157 chr1 131651565 131651618 -111012735 - MIR SINE MIR -127 135 132 2335 78 3 0 chr1 131651618 131651914 -111012439 + AluY SINE Alu 1 297 -14 394 231 14 157 chr1 131651914 131651973 -111012380 - MIR SINE MIR -130 132 66 219 339 73 37 chr1 131652028 131652246 -111012107 - L2 LINE L2 -1105 2209 1984 751 179 45 17 chr1 131653343 131653522 -111010831 + MER53 DNA DNA 1 184 -5 818 294 13 13 chr1 131654252 131654487 -111009866 - MIR SINE MIR -21 241 7 189 0 0 0 chr1 131655202 131655223 -111009130 + (ATTG)n Simple_repeat Simple_repeat 1 21 0 569 167 0 0 chr1 131655226 131655316 -111009037 - FLAM_A SINE Alu -25 117 28 2542 43 0 7 chr1 131655826 131656130 -111008223 - AluY SINE Alu -9 302 1 619 313 122 13 chr1 131656341 131656571 -111007782 - MIR SINE MIR 0 262 8 351 265 31 31 chr1 131656809 131656907 -111007446 + L2 LINE L2 3198 3295 -18 224 313 165 17 chr1 131657984 131658099 -111006254 - L2 LINE L2 -1415 1899 1768 709 260 65 48 chr1 131659225 131659517 -111004836 + L2 LINE L2 3013 3309 -4 353 270 35 9 chr1 131659633 131659748 -111004605 - MIR SINE MIR -82 180 63 197 244 24 85 chr1 131660170 131660252 -111004101 - MIR SINE MIR -79 129 53 2391 77 0 3 chr1 131660263 131660562 -111003791 - AluSp SINE Alu -15 298 1 405 358 68 18 chr1 131660614 131660835 -111003518 - MIR SINE MIR -26 236 5 374 313 188 6 chr1 131660827 131660987 -111003366 - MIR SINE MIR -52 210 22 * 595 309 25 0 chr1 131661399 131661600 -111002753 + MIR SINE MIR 57 262 0 733 178 0 43 chr1 131661832 131661995 -111002358 + Tigger1 DNA MER2_type 2 157 -2261 * 1193 167 9 0 chr1 131661984 131662199 -111002154 + Tigger1 DNA MER2_type 2202 2418 0 439 224 126 42 chr1 131662565 131662708 -111001645 - MIR3 SINE MIR -47 161 7 217 214 0 24 chr1 131663482 131663524 -111000829 - L2 LINE L2 -74 3239 3199 202 285 33 55 chr1 131663638 131663742 -111000611 - MIR SINE MIR -92 116 15 488 288 127 15 chr1 131664760 131664965 -110999388 + MIR SINE MIR 7 234 -28 233 185 62 31 chr1 131664965 131665030 -110999323 - MER69 DNA AcHobo -110 67 1 24 32 0 0 chr1 131665811 131665842 -110998511 + AT_rich Low_complexity Low_complexity 1 31 0 354 336 17 8 chr1 131665924 131666043 -110998310 - MIR SINE MIR -67 141 31 22 35 0 0 chr1 131667339 131667368 -110996985 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 131667433 131667463 -110996890 + AT_rich Low_complexity Low_complexity 1 30 0 438 20 0 0 chr1 131667496 131667547 -110996806 + (TG)n Simple_repeat Simple_repeat 2 52 0 854 218 39 0 chr1 131669298 131669477 -110994876 - MER5A DNA MER1_type -3 186 1 343 293 75 9 chr1 131669586 131669692 -110994661 - L2 LINE L2 -1 3312 3200 471 235 107 40 chr1 131669857 131670028 -110994325 - MIR SINE MIR -14 248 57 1985 153 3 0 chr1 131670028 131670329 -110994024 + AluJo SINE Alu 1 302 -10 471 235 107 40 chr1 131670329 131670373 -110993980 - MIR SINE MIR -205 57 17 676 263 88 12 chr1 131670379 131670619 -110993734 - MER112 DNA MER1_type -1 259 2 2157 113 0 13 chr1 131670708 131671009 -110993344 + AluSg SINE Alu 1 297 -13 1933 129 3 11 chr1 131671127 131671414 -110992939 - AluSx SINE Alu -27 285 1 185 191 119 0 chr1 131671703 131671745 -110992608 - MIR SINE MIR -33 229 183 247 342 18 26 chr1 131672389 131672503 -110991850 - MIR SINE MIR -77 131 19 339 221 97 48 chr1 131672822 131672967 -110991386 - Charlie7 DNA MER1_type -2460 152 1 26 88 0 0 chr1 131674094 131674162 -110990191 + AT_rich Low_complexity Low_complexity 1 68 0 456 267 46 23 chr1 131675316 131675503 -110988850 + MIR SINE MIR 5 192 -65 460 168 34 40 chr1 131676813 131676962 -110987391 + CT-rich Low_complexity Low_complexity 2 149 0 216 0 0 0 chr1 131677720 131677744 -110986609 + (TA)n Simple_repeat Simple_repeat 2 25 0 2488 64 0 16 chr1 131677744 131678057 -110986296 - AluY SINE Alu -3 308 1 1057 8 0 0 chr1 131678249 131678372 -110985981 + L1PA4 LINE L1 6032 6154 -1 25 0 0 0 chr1 131679012 131679037 -110985316 + AT_rich Low_complexity Low_complexity 1 25 0 2224 40 87 7 chr1 131679127 131679403 -110984950 + AluY SINE Alu 1 298 -13 386 379 71 53 chr1 131680201 131680523 -110983830 - L2 LINE L2 -22 3250 2923 315 221 74 74 chr1 131682304 131682426 -110981927 + L2 LINE L2 3183 3304 -9 2078 165 83 15 chr1 131682525 131682924 -110981429 - MSTB LTR MaLR 0 426 1 301 302 12 15 chr1 131682933 131683025 -110981328 - MIR SINE MIR -115 93 4 908 332 148 12 chr1 131683771 131684328 -110980025 + L2 LINE L2 2692 3305 -8 213 94 0 0 chr1 131684445 131684477 -110979876 + (T)n Simple_repeat Simple_repeat 1 32 0 2791 173 109 36 chr1 131684897 131685372 -110978981 - L1MA7 LINE L1 -10 6281 5733 1881 138 50 7 chr1 131685372 131685669 -110978684 - AluSg SINE Alu 0 310 1 2791 173 109 36 chr1 131685669 131685917 -110978436 - L1MA7 LINE L1 -558 5733 5505 856 212 41 6 chr1 131686022 131686192 -110978161 + MER5A DNA MER1_type 10 185 -4 257 250 186 32 chr1 131686554 131686678 -110977675 - MIR3 SINE MIR -31 177 35 28 29 0 0 chr1 131686760 131686795 -110977558 + AT_rich Low_complexity Low_complexity 1 35 0 252 267 67 38 chr1 131687094 131687199 -110977154 + MIR SINE MIR 47 154 -108 688 237 147 22 chr1 131687239 131687471 -110976882 + MIR SINE MIR 2 262 0 2074 107 30 13 chr1 131688309 131688607 -110975746 + AluSx SINE Alu 1 303 -9 334 273 0 0 chr1 131688904 131688970 -110975383 - L2 LINE L2 0 3272 3207 195 246 0 0 chr1 131689883 131689940 -110974413 + (TA)n Simple_repeat Simple_repeat 2 58 0 2040 142 0 3 chr1 131690199 131690502 -110973851 - AluSx SINE Alu -8 304 3 807 237 118 28 chr1 131690651 131690862 -110973491 - MIR SINE MIR -10 252 23 2125 73 0 7 chr1 131691786 131692059 -110972294 + AluSc SINE Alu 28 298 -11 190 273 78 39 chr1 131692714 131692791 -110971562 - L2 LINE L2 -1538 1776 1697 432 263 113 12 chr1 131693705 131693865 -110970488 - MIR3 SINE MIR -3 205 30 1398 132 0 15 chr1 131693907 131694111 -110970242 - AluSg/x SINE Alu -26 286 86 224 396 44 0 chr1 131694143 131694234 -110970119 - L2 LINE L2 -50 3222 3128 228 352 19 19 chr1 131694254 131694359 -110969994 + L2 LINE L2 2669 2773 -541 282 354 58 50 chr1 131694457 131694693 -110969660 + L2 LINE L2 2894 3136 -177 2571 44 0 0 chr1 131694693 131694989 -110969364 - AluY SINE Alu -15 296 1 282 354 58 50 chr1 131694989 131695131 -110969222 + L2 LINE L2 3136 3275 -38 349 334 209 11 chr1 131695695 131696144 -110968209 - L2 LINE L2 -698 2616 2079 6418 86 20 0 chr1 131696750 131697818 -110966535 + L1PA11 LINE L1 5089 6174 0 249 170 0 0 chr1 131697939 131697986 -110966367 + MER5C DNA MER1_type 76 122 -202 195 78 255 39 chr1 131698133 131698184 -110966169 + MER5C DNA MER1_type 263 324 0 304 267 12 0 chr1 131698400 131698486 -110965867 + L2 LINE L2 3227 3313 0 361 311 118 78 chr1 131698658 131699231 -110965122 + L2 LINE L2 2392 3005 -267 1221 218 213 19 chr1 131699231 131699654 -110964699 - MLT1D LTR MaLR 0 505 1 361 311 118 78 chr1 131699654 131699901 -110964452 + L2 LINE L2 3005 3241 -31 195 233 23 0 chr1 131700376 131700419 -110963934 + MIR SINE MIR 209 252 -10 183 100 0 0 chr1 131700762 131700792 -110963561 + (TTAGG)n Simple_repeat Simple_repeat 1 30 0 515 197 80 108 chr1 131701444 131701556 -110962797 + MER106B DNA MER1_type 30 144 -915 3011 156 11 25 chr1 131701556 131702083 -110962270 - MLT2B1 LTR ERVL 0 520 1 515 197 80 108 chr1 131702083 131702183 -110962170 + MER106B DNA MER1_type 144 1059 0 225 226 0 19 chr1 131702317 131702370 -110961983 - MIR SINE MIR -19 243 192 2331 77 0 0 chr1 131702915 131703200 -110961153 + AluY SINE Alu 1 285 -26 230 118 0 0 chr1 131703200 131703223 -110961130 + FLAM_C SINE Alu 1 308 0 214 344 0 0 chr1 131704023 131704084 -110960269 + MIR SINE MIR 33 93 -115 579 294 95 30 chr1 131704109 131704340 -110960013 + MIR SINE MIR 5 250 -12 2560 137 33 35 chr1 131705300 131705374 -110958979 - MSTB LTR MaLR -1 425 352 1781 179 0 3 chr1 131705374 131705682 -110958671 + AluSx SINE Alu 1 307 -5 2560 137 33 35 chr1 131705682 131706031 -110958322 - MSTB LTR MaLR -74 352 3 419 323 85 33 chr1 131706096 131706427 -110957926 - L2 LINE L2 -342 2972 2625 390 316 30 15 chr1 131706441 131706574 -110957779 - L2 LINE L2 -1334 1980 1846 931 210 44 6 chr1 131706581 131706762 -110957591 + MER5A DNA MER1_type 1 188 -1 302 345 128 34 chr1 131706928 131707163 -110957190 + L2 LINE L2 2999 3255 -17 459 0 0 0 chr1 131707274 131707325 -110957028 + (TG)n Simple_repeat Simple_repeat 2 52 0 197 280 67 63 chr1 131707342 131707581 -110956772 - L2 LINE L2 -1648 1666 1427 2307 95 0 0 chr1 131708097 131708407 -110955946 + AluSx SINE Alu 1 310 0 537 264 101 17 chr1 131708954 131709132 -110955221 + MIR SINE MIR 40 232 -30 205 269 15 15 chr1 131709447 131709514 -110954839 + CT-rich Low_complexity Low_complexity 1 67 0 1966 162 0 10 chr1 131710476 131710779 -110953574 - AluJb SINE Alu -12 300 1 1806 130 56 32 chr1 131711423 131711762 -110952591 - THE1C LTR MaLR -27 348 2 221 330 28 57 chr1 131711955 131712061 -110952292 - L2 LINE L2 -20 3252 3150 385 299 51 32 chr1 131712171 131712328 -110952025 + L2 LINE L2 3109 3268 -4 584 199 56 43 chr1 131712513 131712674 -110951679 + MIR SINE MIR 50 212 -50 2313 97 3 3 chr1 131713383 131713681 -110950672 - AluSq SINE Alu -15 298 1 253 319 44 0 chr1 131713914 131714005 -110950348 - MARNA DNA Mariner -398 188 94 211 300 102 65 chr1 131714632 131714985 -110949368 + L2 LINE L2 2488 2853 -461 559 275 80 9 chr1 131715228 131715473 -110948880 - L1ME3A LINE L1 -217 5949 5691 196 337 11 11 chr1 131715485 131715574 -110948779 + L2 LINE L2 2976 3064 -208 195 294 24 47 chr1 131715605 131715690 -110948663 + L2 LINE L2 3189 3271 -1 23 0 0 0 chr1 131716012 131716035 -110948318 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 131716427 131716447 -110947906 + (CGG)n Simple_repeat Simple_repeat 2 21 0 248 299 108 30 chr1 131718212 131718379 -110945974 + MIR SINE MIR 41 220 -42 229 350 126 0 chr1 131719473 131719576 -110944777 - MER5B DNA MER1_type -62 116 1 187 346 39 13 chr1 131720182 131720260 -110944093 + MIR SINE MIR 66 145 -63 591 133 4 20 chr1 131720979 131721215 -110943138 - AluJb SINE Alu -39 273 1 206 276 17 17 chr1 131722467 131722525 -110941828 - L2 LINE L2 -13 3300 3243 199 299 37 47 chr1 131722899 131723006 -110941347 - L3 LINE CR1 -358 1219 1114 308 401 12 6 chr1 131724734 131724906 -110939447 - MIR3 SINE MIR -2 206 34 266 305 0 0 chr1 131725612 131725671 -110938682 - L2 LINE L2 -24 3289 3231 389 337 52 26 chr1 131725765 131725958 -110938395 - L2 LINE L2 -237 3035 2838 180 111 0 0 chr1 131726928 131726955 -110937398 + (TG)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr1 131728102 131728125 -110936228 + AT_rich Low_complexity Low_complexity 1 23 0 729 133 15 74 chr1 131728698 131728833 -110935520 - FLAM_C SINE Alu -5 128 2 200 245 61 0 chr1 131730151 131730200 -110934153 - L2 LINE L2 -575 2739 2688 190 236 202 11 chr1 131730218 131730307 -110934046 + L3 LINE CR1 438 543 -1034 211 280 170 0 chr1 131730432 131730532 -110933821 + MIR3 SINE MIR 89 205 -3 371 327 20 30 chr1 131730560 131730762 -110933591 + L3 LINE CR1 773 972 -605 489 315 30 0 chr1 131730841 131730998 -110933355 + L3 LINE CR1 983 1144 -433 621 293 95 17 chr1 131730998 131731080 -110933273 + MIR SINE MIR 2 76 -186 2566 60 0 0 chr1 131731080 131731382 -110932971 - AluY SINE Alu -9 302 1 621 293 95 17 chr1 131731382 131731531 -110932822 + MIR SINE MIR 76 251 -11 416 333 95 9 chr1 131731611 131731821 -110932532 + L3 LINE CR1 1131 1358 -219 3053 148 39 0 chr1 131731835 131732349 -110932004 - L1MB7 LINE L1 -20 6164 5631 828 221 179 0 chr1 131732463 131732653 -110931700 - MIR SINE MIR -21 241 18 297 254 14 0 chr1 131732723 131732794 -110931559 + L3 LINE CR1 1452 1523 -54 1041 254 133 42 chr1 131733844 131734353 -110930000 + L2 LINE L2 2757 3313 0 1670 198 59 6 chr1 131734473 131734797 -110929556 - MER58B DNA MER1_type 0 341 1 2190 102 3 10 chr1 131735414 131735708 -110928645 - AluSx SINE Alu -20 292 1 355 292 159 19 chr1 131735741 131735924 -110928429 - MIR SINE MIR -56 206 4 21 36 0 0 chr1 131736793 131736821 -110927532 + AT_rich Low_complexity Low_complexity 1 28 0 1946 134 3 52 chr1 131738029 131738336 -110926017 + AluJo SINE Alu 1 292 -20 262 389 92 22 chr1 131738885 131739289 -110925064 + L2 LINE L2 2544 2975 -339 303 98 78 0 chr1 131739642 131739693 -110924660 - MLT2A1 LTR ERVL 0 444 390 3072 73 18 10 chr1 131739754 131740151 -110924202 - MLT2A1 LTR ERVL -44 400 1 11220 78 14 10 chr1 131740151 131741615 -110922738 - HERVL-A1 LTR ERVL 0 5654 4185 2810 77 14 0 chr1 131741882 131742232 -110922121 - THE1A LTR MaLR 0 355 1 2283 97 7 0 chr1 131742565 131742864 -110921489 - AluY SINE Alu -10 301 1 1017 153 0 0 chr1 131743064 131743240 -110921113 + CT-rich Low_complexity Low_complexity 4 179 0 1808 143 26 0 chr1 131743252 131743518 -110920835 - AluSx SINE Alu -39 273 1 4695 29 0 0 chr1 131743899 131744436 -110919917 + L1PA5 LINE L1 5626 6162 0 2369 100 0 0 chr1 131745125 131745424 -110918929 - AluSg SINE Alu -11 299 1 330 267 23 12 chr1 131747267 131747353 -110917000 - L2 LINE L2 0 3313 3227 545 299 91 23 chr1 131748149 131748370 -110915983 - MIR SINE MIR -6 256 21 387 0 0 0 chr1 131748545 131748588 -110915765 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 266 16 16 chr1 131749012 131749076 -110915277 - MIR SINE MIR -109 153 90 457 221 62 122 chr1 131749088 131749441 -110914912 + L2 LINE L2 2982 3313 0 238 261 11 45 chr1 131750841 131750929 -110913424 + L2 LINE L2 3229 3313 0 2300 115 0 0 chr1 131751261 131751573 -110912780 - AluSx SINE Alu 0 312 1 329 313 54 18 chr1 131954442 131954554 -110709799 + L2 LINE L2 3148 3263 -9 1502 69 0 5 chr1 131955374 131955563 -110708790 - AluY SINE Alu -123 188 1 565 316 31 5 chr1 131955564 131955757 -110708596 - L1MCc LINE L1 -5414 1009 812 1048 84 7 14 chr1 131955757 131955899 -110708454 - AluSq SINE Alu -90 223 83 696 322 39 13 chr1 131956328 131956561 -110707792 + MIR SINE MIR 8 246 -16 596 264 41 66 chr1 131956896 131957093 -110707260 + MIR3 SINE MIR 13 204 -4 1063 129 6 41 chr1 131957999 131958169 -110706184 + U1 snRNA snRNA 1 164 -1 1283 220 176 24 chr1 131958184 131958634 -110705719 + MLT1F1 LTR MaLR 50 567 0 320 217 174 0 chr1 131958842 131958911 -110705442 - MER5A DNA MER1_type -80 109 29 1179 228 48 32 chr1 131959010 131959399 -110704954 + MER92B LTR ERV1 10 177 -235 594 225 0 7 chr1 131960028 131960170 -110704183 + L1M3 LINE L1 5447 5587 -593 247 215 81 2 chr1 131960173 131960264 -110704089 + MLT1C LTR MaLR 5 100 -290 844 205 0 0 chr1 131961913 131962074 -110702279 - MER58A DNA MER1_type -1 223 63 268 83 0 0 chr1 131962074 131962110 -110702243 - U2 snRNA snRNA -152 36 1 * 421 136 0 0 chr1 131962109 131962168 -110702185 - MER58A DNA MER1_type -32 75 17 2204 144 46 30 chr1 131962168 131962606 -110701747 + MER65A LTR ERV1 1 445 0 1279 174 102 0 chr1 131963289 131963524 -110700829 - AluJo SINE Alu -53 259 1 269 296 136 40 chr1 131963815 131963940 -110700413 - L2 LINE L2 -27 3245 3109 232 236 18 0 chr1 131964266 131964321 -110700032 + MER5A DNA MER1_type 134 189 0 2493 70 0 6 chr1 131965571 131965883 -110698470 - AluY SINE Alu -1 310 1 2131 112 48 23 chr1 131965893 131966286 -110698067 - L1MA4A LINE L1 -5 6298 5896 23 0 0 0 chr1 131966436 131966459 -110697894 + AT_rich Low_complexity Low_complexity 1 23 0 2071 120 0 32 chr1 131966578 131966887 -110697466 + AluSx SINE Alu 1 299 -13 2271 112 7 0 chr1 131966887 131967192 -110697161 + AluSx SINE Alu 1 307 -5 346 282 26 0 chr1 131967194 131967311 -110697042 + L1M4 LINE L1 4046 4165 -1981 357 177 0 0 chr1 131967405 131967467 -110696886 - MLT1A1 LTR MaLR 0 365 304 733 195 0 0 chr1 131967467 131967590 -110696763 + FLAM_C SINE Alu 1 123 -20 2293 99 0 3 chr1 131967599 131967913 -110696440 + AluSq SINE Alu 1 313 0 1284 154 67 57 chr1 131967947 131968245 -110696108 - MLT1A1 LTR MaLR -64 301 1 6672 157 12 45 chr1 131968830 131970128 -110694225 + THE1-int LTR MaLR 109 1363 -217 2059 83 0 86 chr1 131970228 131970541 -110693812 + AluSg SINE Alu 4 289 -21 567 293 64 21 chr1 131970585 131971104 -110693249 + L1MC/D LINE L1 3810 4362 -1784 5053 73 6 0 chr1 131971165 131971826 -110692527 + L1PA6 LINE L1 5485 6149 -5 370 281 78 39 chr1 131971847 131972078 -110692275 + L1MC/D LINE L1 4382 4621 -1525 418 333 46 20 chr1 131972267 131972462 -110691891 - L1ME4a LINE L1 -188 5933 5734 439 278 84 43 chr1 131972512 131972773 -110691580 + L1MC/D LINE L1 4997 5268 -878 590 276 68 42 chr1 131972797 131973105 -110691248 + L1MC/D LINE L1 5319 5634 -2174 2194 97 14 3 chr1 131973551 131973841 -110690512 + AluSq SINE Alu 1 293 -20 23 33 0 0 chr1 131974213 131974243 -110690110 + AT_rich Low_complexity Low_complexity 1 30 0 517 233 114 0 chr1 131974695 131974888 -110689465 - MER114 LTR ERV -344 304 90 3086 148 30 13 chr1 131974900 131975495 -110688858 + L1MB7 LINE L1 5564 6168 -16 22 0 0 0 chr1 131975531 131975553 -110688800 + AT_rich Low_complexity Low_complexity 1 22 0 521 213 88 12 chr1 131975605 131975765 -110688588 - L1ME1 LINE L1 -104 6062 5891 22 0 0 0 chr1 131975993 131976015 -110688338 + AT_rich Low_complexity Low_complexity 1 22 0 580 119 0 0 chr1 131976170 131976254 -110688099 - AluSg/x SINE Alu -13 297 214 23414 160 34 31 chr1 131976354 131979750 -110684603 - L1P3 LINE L1 -875 5586 2036 2485 76 0 0 chr1 131979750 131980053 -110684300 + AluY SINE Alu 1 303 -8 23414 160 34 31 chr1 131980053 131982087 -110682266 - L1P3 LINE L1 -4425 2036 10 3104 214 28 24 chr1 131982172 131982595 -110681758 - L1MEc LINE L1 -1986 4229 3809 1841 168 10 0 chr1 131982595 131982886 -110681467 + AluJo SINE Alu 3 296 -16 3104 214 28 24 chr1 131982886 131983327 -110681026 - L1MEc LINE L1 -2406 3809 3362 1515 168 13 32 chr1 131983328 131983643 -110680710 - L1MB8 LINE L1 -5 6173 5865 254 119 24 0 chr1 131983687 131983729 -110680624 - FLAM_A SINE Alu -6 127 85 1727 164 9 90 chr1 131983745 131983804 -110680549 - L1MB8 LINE L1 -302 5876 5814 1464 164 13 77 chr1 131983804 131984116 -110680237 + AluJb SINE Alu 1 292 -20 1727 164 9 90 chr1 131984116 131984259 -110680094 - L1MB8 LINE L1 -364 5814 5661 2151 117 3 0 chr1 131984259 131984558 -110679795 - AluSx SINE Alu -12 300 1 1727 164 9 90 chr1 131984558 131984658 -110679695 - L1MB8 LINE L1 -517 5661 5615 2120 106 0 7 chr1 131984658 131984966 -110679387 - AluSg SINE Alu 0 306 1 1727 164 9 90 chr1 131984966 131985093 -110679260 - L1MB8 LINE L1 -563 5615 5479 3939 22 4 0 chr1 131985096 131985593 -110678760 - L1PA3 LINE L1 -1335 4811 4313 7676 26 0 0 chr1 131985593 131986948 -110677405 + L1PA3 LINE L1 4801 6152 -3 256 114 0 23 chr1 131986959 131987003 -110677350 - L1MB8 LINE L1 -703 5481 5439 * 3545 203 92 8 chr1 131986992 131988054 -110676299 - L1MEc LINE L1 -2834 3381 2231 716 219 7 0 chr1 131988057 131988194 -110676159 + MER58A DNA MER1_type 1 138 0 618 160 4 122 chr1 131988210 131988447 -110675906 - L1MEc LINE L1 -4125 2271 2063 21 0 0 0 chr1 131989822 131989843 -110674510 + AT_rich Low_complexity Low_complexity 1 21 0 4018 156 89 19 chr1 131990142 131991087 -110673266 + L1MB8 LINE L1 5174 6178 0 26 0 0 0 chr1 131991827 131991853 -110672500 + AT_rich Low_complexity Low_complexity 1 26 0 1969 148 10 3 chr1 131993873 131994176 -110670177 - AluJb SINE Alu -7 305 1 611 363 47 25 chr1 131994189 131994511 -110669842 + L2 LINE L2 2944 3272 0 1978 121 13 10 chr1 131995203 131995501 -110668852 + AluSx SINE Alu 1 299 -13 223 275 33 92 chr1 131995670 131995790 -110668563 + MIR SINE MIR 105 217 -45 235 179 0 0 chr1 131995928 131995967 -110668386 - L2 LINE L2 -10 3262 3224 650 318 127 34 chr1 131996070 131996457 -110667896 - L2 LINE L2 0 3313 2891 603 283 151 70 chr1 131996511 131996981 -110667372 - L2 LINE L2 -896 2418 1911 1292 208 36 0 chr1 131997000 131997250 -110667103 + MIR SINE MIR 1 259 -3 469 323 94 10 chr1 131997297 131997585 -110666768 - L2 LINE L2 -1452 1862 1551 917 127 33 0 chr1 131997590 131997740 -110666613 + L1M3f LINE L1 3 157 -5171 181 309 32 56 chr1 131998341 131998467 -110665886 - L2 LINE L2 -2418 896 774 426 114 29 29 chr1 131999742 131999805 -110664548 + AluS SINE Alu 221 286 -24 944 62 0 0 chr1 131999805 131999918 -110664435 + L1PA7 LINE L1 6040 6152 -2 34 0 0 0 chr1 131999924 131999958 -110664395 + AT_rich Low_complexity Low_complexity 1 34 0 827 175 0 7 chr1 132000415 132000552 -110663801 + AluJo SINE Alu 1 136 -176 25 0 0 0 chr1 132000552 132000577 -110663776 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 132000641 132000676 -110663677 + AT_rich Low_complexity Low_complexity 1 35 0 5685 161 33 9 chr1 132000676 132002401 -110661952 - L1MA7 LINE L1 -4 6287 4518 958 157 20 25 chr1 132002380 132002577 -110661776 + L1MA7 LINE L1 4337 4532 -1614 * 2396 93 0 3 chr1 132002620 132002921 -110661432 - AluSx SINE Alu -12 300 1 543 253 173 20 chr1 132003104 132003306 -110661047 + MIR SINE MIR 5 237 -25 449 282 51 8 chr1 132003386 132003503 -110660850 - L2 LINE L2 0 3272 3151 2438 80 0 0 chr1 132003665 132003967 -110660386 + AluY SINE Alu 1 302 -9 22 56 0 0 chr1 132004048 132004084 -110660269 + AT_rich Low_complexity Low_complexity 1 36 0 1886 107 73 0 chr1 132004252 132004513 -110659840 + AluSx SINE Alu 16 295 -17 26 0 0 0 chr1 132004868 132004894 -110659459 + AT_rich Low_complexity Low_complexity 1 26 0 375 258 31 0 chr1 132005249 132005346 -110659007 + L1ME LINE L1 49 148 -5922 277 341 0 24 chr1 132005475 132005601 -110658752 + L1ME LINE L1 328 450 -5620 * 1124 258 112 70 chr1 132005586 132006433 -110657920 + L1MD1 LINE L1 105 915 -5167 2070 126 13 0 chr1 132006433 132006734 -110657619 + AluSx SINE Alu 1 305 -7 1124 258 112 70 chr1 132006734 132006800 -110657553 + L1MD1 LINE L1 915 977 -5105 1653 124 70 12 chr1 132006800 132007059 -110657294 + AluSx SINE Alu 25 298 -14 1124 258 112 70 chr1 132007059 132007325 -110657028 + L1MD1 LINE L1 977 1206 -4876 583 208 33 33 chr1 132007388 132007508 -110656845 + FLAM_A SINE Alu 1 120 -13 3251 195 59 22 chr1 132007520 132008009 -110656344 + L1MD1 LINE L1 4252 4721 -1455 2314 129 0 0 chr1 132008009 132008320 -110656033 + AluSx SINE Alu 1 311 -1 3251 195 59 22 chr1 132008320 132008482 -110655871 + L1MD1 LINE L1 4721 4876 -1300 2246 82 7 3 chr1 132008482 132008774 -110655579 + AluSx SINE Alu 2 294 -18 3251 195 59 22 chr1 132008774 132008962 -110655391 + L1MD1 LINE L1 4876 5056 -1120 2344 93 0 0 chr1 132008962 132009262 -110655091 + AluSg SINE Alu 1 300 -10 3251 195 59 22 chr1 132009262 132010123 -110654230 + L1MD1 LINE L1 5056 6176 0 2317 115 0 0 chr1 132011704 132012016 -110652337 - AluSx SINE Alu 0 312 1 422 241 204 0 chr1 132012705 132012842 -110651511 - MIR3 SINE MIR -2 206 42 1904 168 0 0 chr1 132013013 132013310 -110651043 + AluJb SINE Alu 1 297 -15 336 311 83 23 chr1 132013635 132013767 -110650586 - L2 LINE L2 0 3272 3133 229 230 149 0 chr1 132014018 132014090 -110650263 + MIR SINE MIR 100 182 -80 449 252 93 7 chr1 132014090 132014229 -110650124 + MIR SINE MIR 1 151 -111 22 0 0 0 chr1 132015257 132015279 -110649074 + AT_rich Low_complexity Low_complexity 1 22 0 846 258 96 4 chr1 132015348 132015577 -110648776 + MIR SINE MIR 5 254 -8 2153 83 4 4 chr1 132016071 132016348 -110648005 + AluSx SINE Alu 1 277 -35 471 35 0 0 chr1 132016349 132016406 -110647947 + (TC)n Simple_repeat Simple_repeat 2 58 0 252 0 0 0 chr1 132016405 132016433 -110647920 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1973 131 3 17 chr1 132016939 132017237 -110647116 - AluSx SINE Alu -18 294 1 2277 85 0 16 chr1 132017251 132017558 -110646795 - AluSc SINE Alu -7 302 1 3336 221 20 36 chr1 132017579 132018433 -110645920 - L1ME1 LINE L1 -5 6161 5322 2256 125 17 3 chr1 132018435 132018787 -110645566 - L1PA10 LINE L1 -2 6166 5810 25 0 0 0 chr1 132018890 132018915 -110645438 + GC_rich Low_complexity Low_complexity 1 25 0 6791 35 8 13 chr1 132018915 132019710 -110644643 + SVA Other Other 596 1386 0 189 109 0 87 chr1 132019891 132019937 -110644416 - L2 LINE L2 -1 3312 3271 6867 66 12 23 chr1 132020269 132021825 -110642528 - SVA Other Other -799 1386 5 2122 115 0 3 chr1 132021970 132022293 -110642060 - AluSx SINE Alu 0 322 1 244 90 23 0 chr1 132022480 132022524 -110641829 - L1PA16 LINE L1 -8 6157 6114 1947 160 27 5 chr1 132022531 132022889 -110641464 - L1PA16 LINE L1 -2 6166 5803 1102 89 7 7 chr1 132023250 132023396 -110640957 - THE1A LTR MaLR 0 355 210 12431 95 9 1 chr1 132023408 132024975 -110639378 - THE1A-int LTR MaLR 0 1580 1 2980 60 17 0 chr1 132024975 132025324 -110639029 - THE1A LTR MaLR 0 355 1 989 191 98 10 chr1 132025359 132025553 -110638800 - AluJo SINE Alu -101 211 1 2214 256 133 36 chr1 132025570 132026659 -110637694 - L2 LINE L2 -19 3294 2007 2677 195 103 19 chr1 132027143 132027666 -110636687 - MLT1F1 LTR MaLR 0 567 1 601 305 58 102 chr1 132027666 132028378 -110635975 - MLT1F1-int LTR MaLR 0 1371 692 1853 190 62 64 chr1 132028389 132028573 -110635780 + MLT1C LTR MaLR 1 184 -283 2286 108 10 0 chr1 132028573 132028880 -110635473 + AluSx SINE Alu 1 310 -2 1853 190 62 64 chr1 132028880 132029163 -110635190 + MLT1C LTR MaLR 184 467 0 2151 114 10 0 chr1 132029240 132029538 -110634815 - AluSx SINE Alu -11 301 1 547 255 78 21 chr1 132029655 132029847 -110634506 - MLT1F1-int LTR MaLR -770 601 399 841 153 0 0 chr1 132030478 132030602 -110633751 + FLAM_C SINE Alu 2 125 -18 2115 123 3 3 chr1 132030989 132031281 -110633072 + AluSc SINE Alu 1 292 -17 363 247 11 43 chr1 132031479 132031572 -110632781 + L2 LINE L2 3224 3313 0 1015 163 71 5 chr1 132031623 132031819 -110632534 + MER6B DNA MER2_type 2 210 0 14829 39 14 0 chr1 132031829 132034345 -110630008 - L1PA5 LINE L1 -1 6153 3647 424 0 0 0 chr1 132034345 132034391 -110629962 + L1PA5 LINE L1 3625 3670 -2476 197 379 60 9 chr1 132036993 132037109 -110627244 + MIR SINE MIR 31 152 -56 279 294 60 0 chr1 132037297 132037387 -110626966 + MIR SINE MIR 53 141 -67 531 275 111 37 chr1 132037534 132037723 -110626630 - MIR SINE MIR -24 238 36 567 149 0 0 chr1 132039638 132039725 -110624628 + MLT2B3 LTR ERVL 1 87 -467 915 130 0 68 chr1 132039923 132040085 -110624268 + MLT2B3 LTR ERVL 390 540 -14 2069 136 0 3 chr1 132040965 132041260 -110623093 + AluSx SINE Alu 1 294 -18 191 113 151 57 chr1 132041269 132041322 -110623031 - L2 LINE L2 0 3313 3256 357 279 296 40 chr1 132041505 132041686 -110622667 - L3 LINE CR1 -72 1505 1372 2157 87 31 3 chr1 132041686 132041972 -110622381 + AluSc SINE Alu 3 296 -13 357 279 296 40 chr1 132041972 132042138 -110622215 - L3 LINE CR1 -205 1372 1069 399 307 80 0 chr1 132042148 132042285 -110622068 - MIR SINE MIR -17 245 98 197 292 42 0 chr1 132042296 132042344 -110622009 - L3 LINE CR1 -505 1072 1023 344 322 173 18 chr1 132042421 132042750 -110621603 - L3 LINE CR1 -668 909 530 313 319 29 22 chr1 132042834 132042976 -110621377 + MIR SINE MIR 28 168 -59 279 0 0 0 chr1 132043141 132043172 -110621181 + (A)n Simple_repeat Simple_repeat 1 31 0 593 227 74 102 chr1 132045715 132045931 -110618422 - MER63A DNA MER1_type 0 210 1 2410 60 0 20 chr1 132046519 132046821 -110617532 - AluY SINE Alu -15 296 1 548 251 28 1 chr1 132047144 132047299 -110617054 - MIR SINE MIR -30 232 76 344 154 15 15 chr1 132047541 132047606 -110616747 - AluSp SINE Alu -116 187 123 2371 101 0 13 chr1 132048324 132048640 -110615713 + AluSx SINE Alu 1 312 0 351 277 56 84 chr1 132049170 132049383 -110614970 + L3 LINE CR1 1080 1286 -291 2290 106 3 6 chr1 132049397 132049709 -110614644 + AluSx SINE Alu 1 311 -1 714 264 87 0 chr1 132049730 132049938 -110614415 - MIR SINE MIR -1 261 36 228 269 60 52 chr1 132050002 132050136 -110614217 + L3 LINE CR1 1335 1469 -108 593 196 6 71 chr1 132050174 132050342 -110614011 + MER5A DNA MER1_type 33 189 0 2333 90 7 7 chr1 132051592 132051902 -110612451 - AluY SINE Alu -1 310 1 1766 152 0 49 chr1 132052345 132052486 -110611867 + AluJo SINE Alu 1 147 -165 2033 129 7 0 chr1 132052486 132052815 -110611538 + AluSx SINE Alu 3 333 0 1766 152 0 49 chr1 132052815 132053000 -110611353 + AluJo SINE Alu 147 312 0 1672 200 129 14 chr1 132054089 132054514 -110609839 + Charlie4a DNA MER1_type 14 487 -21 259 194 309 43 chr1 132054861 132055000 -110609353 - MIR SINE MIR -54 208 33 231 305 69 52 chr1 132056117 132056291 -110608062 + MIR SINE MIR 47 223 -39 712 211 123 18 chr1 132056322 132056549 -110607804 - MIR SINE MIR 0 262 12 304 239 15 108 chr1 132056664 132056709 -110607644 - MIR SINE MIR -143 119 71 2635 48 0 10 chr1 132056709 132057020 -110607333 - AluY SINE Alu -2 309 2 304 239 15 108 chr1 132057020 132057104 -110607249 - MIR SINE MIR -191 71 2 433 273 94 84 chr1 132057628 132057731 -110606622 - L1MC/D LINE L1 -1869 4277 4177 2068 102 25 0 chr1 132057731 132058005 -110606348 - AluSq SINE Alu -32 281 1 433 273 94 84 chr1 132058005 132058888 -110605465 - L1MC/D LINE L1 -1969 4177 3752 1709 160 42 0 chr1 132058901 132059189 -110605164 - AluJo SINE Alu -10 302 3 1841 76 8 16 chr1 132059766 132060015 -110604338 - AluSx SINE Alu -8 304 58 315 277 89 0 chr1 132060249 132060361 -110603992 + MIR SINE MIR 90 211 -51 592 271 43 5 chr1 132060685 132060873 -110603480 - L2 LINE L2 -2172 1142 948 187 376 103 18 chr1 132061140 132061305 -110603048 + L2 LINE L2 2992 3170 -102 1813 163 14 3 chr1 132061306 132061594 -110602759 + AluJo SINE Alu 1 291 -21 321 264 107 25 chr1 132061769 132061890 -110602463 - MIR3 SINE MIR -45 163 33 194 296 15 111 chr1 132062559 132062654 -110601699 - MIR SINE MIR -67 141 61 2302 122 3 0 chr1 132062654 132062966 -110601387 + AluSp SINE Alu 1 313 0 194 296 15 111 chr1 132062966 132063005 -110601348 - MIR SINE MIR -147 61 20 1277 265 165 35 chr1 132063408 132063666 -110600687 + HAL1 LINE L1 1532 1755 -752 704 133 70 31 chr1 132063666 132063794 -110600559 + FLAM_C SINE Alu 1 133 0 1277 265 165 35 chr1 132063794 132064366 -110599987 + HAL1 LINE L1 1755 2470 -37 2083 127 0 19 chr1 132064389 132064705 -110599648 - AluSx SINE Alu -2 310 1 356 291 101 38 chr1 132064877 132065275 -110599078 + L2 LINE L2 1942 2364 -950 228 303 45 0 chr1 132065483 132065572 -110598781 + L2 LINE L2 3157 3249 -23 251 250 171 11 chr1 132065808 132065896 -110598457 - L2 LINE L2 -1 3271 3170 2360 99 0 0 chr1 132066098 132066402 -110597951 + AluSx SINE Alu 9 312 0 278 200 123 0 chr1 132066413 132066478 -110597875 - MIR SINE MIR -12 250 178 2051 146 3 0 chr1 132066571 132066880 -110597473 + AluJb SINE Alu 3 312 0 228 245 204 20 chr1 132068033 132068131 -110596222 + L2 LINE L2 3189 3304 -9 1768 148 52 7 chr1 132068246 132068537 -110595816 + AluJb SINE Alu 1 304 -8 28 29 0 0 chr1 132068912 132068947 -110595406 + AT_rich Low_complexity Low_complexity 1 35 0 333 262 9 95 chr1 132070741 132070844 -110593509 + MIR SINE MIR 1 79 -183 2520 77 0 0 chr1 132070844 132071141 -110593212 - AluSx SINE Alu -13 299 3 333 262 9 95 chr1 132071141 132071247 -110593106 + MIR SINE MIR 79 192 -70 1946 153 14 0 chr1 132072113 132072401 -110591952 - AluSx SINE Alu -20 292 1 2152 116 3 0 chr1 132073093 132073385 -110590968 + AluSx SINE Alu 3 295 -17 203 179 0 0 chr1 132073943 132073982 -110590371 + (TA)n Simple_repeat Simple_repeat 1 39 0 748 115 18 0 chr1 132074149 132074262 -110590091 + AluSq/x SINE Alu 2 116 -197 1843 190 123 17 chr1 132074345 132074760 -110589593 + MLT2B1 LTR ERVL 1 459 -61 2039 133 0 3 chr1 132074761 132075081 -110589272 + AluSx SINE Alu 1 319 0 1684 133 4 0 chr1 132076457 132076691 -110587662 + AluJb SINE Alu 33 267 -45 636 115 0 19 chr1 132076840 132076944 -110587409 + AluY SINE Alu 210 311 0 865 204 25 92 chr1 132078015 132078056 -110586297 - MER58A DNA MER1_type -2196 224 182 1991 139 32 0 chr1 132078056 132078337 -110586016 + AluSx SINE Alu 1 290 -22 865 204 25 92 chr1 132078337 132078535 -110585818 - MER58A DNA MER1_type -2238 182 1 1913 90 0 4 chr1 132079339 132079584 -110584769 + AluSg1 SINE Alu 50 293 -16 184 323 32 32 chr1 132079890 132080014 -110584339 + L2 LINE L2 2551 2674 -640 271 295 128 52 chr1 132080071 132080437 -110583916 + L2 LINE L2 2305 2698 -616 2435 100 3 0 chr1 132083277 132083587 -110580766 - AluY SINE Alu 0 311 1 2014 90 62 35 chr1 132084420 132084708 -110579645 - AluSx SINE Alu -15 297 2 859 153 90 0 chr1 132084871 132085048 -110579305 - L1MA8 LINE L1 -1 6290 6098 1240 143 0 0 chr1 132085052 132085227 -110579126 - AluSg/x SINE Alu -11 301 127 1889 149 14 0 chr1 132085414 132085532 -110578821 + AluJb SINE Alu 5 120 -192 423 0 0 0 chr1 132085532 132085579 -110578774 + (CA)n Simple_repeat Simple_repeat 2 48 0 1889 149 14 0 chr1 132085579 132085736 -110578617 + AluJb SINE Alu 120 284 -28 1543 215 53 30 chr1 132086189 132086622 -110577731 + LTR47B LTR ERVL 1 443 0 1006 124 41 30 chr1 132087123 132087292 -110577061 - Tigger7 DNA MER2_type -1 2586 2416 * 2100 163 70 62 chr1 132087290 132087372 -110576981 - Tigger7 DNA MER2_type -2025 462 382 2189 116 0 7 chr1 132087372 132087673 -110576680 - AluSx SINE Alu -13 299 1 2100 163 70 62 chr1 132087673 132087734 -110576619 - Tigger7 DNA MER2_type -2105 382 323 2617 53 0 0 chr1 132087734 132088034 -110576319 - AluY SINE Alu -11 300 1 2357 108 39 29 chr1 132088044 132088459 -110575894 - L1MA4A LINE L1 -5 6298 5880 2100 163 70 62 chr1 132088459 132088757 -110575596 - Tigger7 DNA MER2_type -2172 315 5 317 192 41 14 chr1 132089489 132089562 -110574791 + L2 LINE L2 3239 3313 0 286 351 69 33 chr1 132090567 132090764 -110573589 + MIR SINE MIR 1 210 -52 2431 77 0 19 chr1 132090764 132091074 -110573279 + AluY SINE Alu 1 304 -7 286 351 69 33 chr1 132091074 132091121 -110573232 + MIR SINE MIR 210 254 -8 187 279 12 47 chr1 132091708 132091794 -110572559 + L2 LINE L2 2222 2304 -1010 195 266 75 21 chr1 132092090 132092184 -110572169 - L2 LINE L2 -207 3065 2967 2106 126 0 0 chr1 132092208 132092494 -110571859 + AluSg SINE Alu 4 289 -21 1639 171 23 0 chr1 132092640 132092904 -110571449 - AluJo SINE Alu -42 270 1 967 158 6 13 chr1 132095195 132095353 -110569000 + AluSg/x SINE Alu 141 297 -13 2200 120 13 3 chr1 132095955 132096264 -110568089 + AluSx SINE Alu 1 312 0 1784 109 98 18 chr1 132096279 132096554 -110567799 + AluSc SINE Alu 1 297 -12 358 207 58 11 chr1 132096874 132096961 -110567392 + MER5B DNA MER1_type 4 94 -84 2414 50 7 20 chr1 132097014 132097312 -110567041 + AluY SINE Alu 2 295 -16 2510 84 0 0 chr1 132098144 132098452 -110565901 + AluSc SINE Alu 2 309 0 1897 119 3 25 chr1 132098660 132098945 -110565408 + AluSx SINE Alu 2 280 -32 352 118 29 0 chr1 132098945 132099013 -110565340 + GA-rich Low_complexity Low_complexity 1 70 0 254 341 169 11 chr1 132099015 132099282 -110565071 - L2 LINE L2 -397 2917 2609 1471 162 122 43 chr1 132099879 132100231 -110564122 + MLT1B LTR MaLR 1 380 -10 2014 118 4 0 chr1 132100572 132100843 -110563510 + AluSx SINE Alu 1 272 -40 2413 82 0 0 chr1 132100960 132101253 -110563100 - AluY SINE Alu -18 293 1 817 66 9 0 chr1 132101254 132101360 -110562993 + LTR12 LTR ERV1 608 714 0 549 99 0 0 chr1 132101410 132101491 -110562862 + Alu SINE Alu 231 311 0 429 337 129 15 chr1 132101509 132101836 -110562517 - L2 LINE L2 -322 2991 2624 2094 100 4 0 chr1 132101847 132102118 -110562235 + AluSx SINE Alu 1 272 -40 204 185 31 15 chr1 132102124 132102189 -110562164 + GA-rich Low_complexity Low_complexity 4 69 0 1965 96 10 80 chr1 132102408 132102721 -110561632 - AluSg SINE Alu -19 291 1 262 295 70 16 chr1 132103064 132103193 -110561160 - Charlie8 DNA MER1_type -2237 180 45 23 0 0 0 chr1 132103308 132103331 -110561022 + AT_rich Low_complexity Low_complexity 1 23 0 2088 120 0 32 chr1 132103450 132103759 -110560594 + AluSx SINE Alu 1 299 -13 2273 105 7 10 chr1 132103759 132104064 -110560289 + AluSq SINE Alu 1 304 -9 1142 122 6 0 chr1 132104067 132104223 -110560130 + AluSg/x SINE Alu 127 283 -27 2326 101 0 0 chr1 132105725 132106021 -110558332 + AluSx SINE Alu 1 296 -16 180 147 0 0 chr1 132106501 132106535 -110557818 + L2 LINE L2 2922 2955 -358 22 0 0 0 chr1 132107376 132107398 -110556955 + AT_rich Low_complexity Low_complexity 1 22 0 2479 72 0 0 chr1 132107414 132107707 -110556646 + AluY SINE Alu 1 293 -18 187 309 221 22 chr1 132108186 132108367 -110555986 - MIR SINE MIR -11 251 35 2174 113 0 26 chr1 132108629 132108931 -110555422 - AluSq SINE Alu -19 294 1 262 239 220 0 chr1 132109287 132109396 -110554957 - MIR SINE MIR -21 241 109 312 255 10 20 chr1 132109788 132109890 -110554463 - L2 LINE L2 -38 3275 3175 2250 125 0 0 chr1 132109898 132110193 -110554160 - AluSx SINE Alu -17 295 1 181 304 58 0 chr1 132110258 132110327 -110554026 - L2 LINE L2 -252 3061 2989 251 330 11 0 chr1 132110360 132110454 -110553899 - MIR3 SINE MIR -25 183 89 1851 155 0 10 chr1 132110559 132110850 -110553503 - AluJb SINE Alu -18 294 7 188 182 0 73 chr1 132111448 132111503 -110552850 + MER5B DNA MER1_type 2 52 -126 1729 166 18 0 chr1 132113398 132113681 -110550672 + AluJb SINE Alu 25 312 0 209 283 0 66 chr1 132113684 132113790 -110550563 + MIR SINE MIR 42 140 -68 2058 96 0 15 chr1 132113827 132114120 -110550233 - AluSx SINE Alu 0 306 18 513 167 46 9 chr1 132114121 132114229 -110550124 - L1ME3A LINE L1 -266 5904 5793 386 231 63 8 chr1 132114297 132114423 -110549930 + L1ME3A LINE L1 6025 6157 -5 2268 118 0 0 chr1 132114635 132114931 -110549422 + AluJb SINE Alu 1 296 -16 4845 148 35 29 chr1 132114931 132115824 -110548529 - L1MB3 LINE L1 -4 6179 5282 231 330 76 17 chr1 132115848 132115966 -110548387 - MIR3 SINE MIR -81 127 3 2340 92 3 0 chr1 132116892 132117185 -110547168 + AluSx SINE Alu 1 294 -18 2016 117 7 55 chr1 132117194 132117502 -110546851 + AluSx SINE Alu 2 294 -18 2365 81 0 26 chr1 132117626 132117934 -110546419 + AluSq SINE Alu 2 301 -12 1642 107 9 0 chr1 132118034 132118249 -110546104 - AluSq SINE Alu -96 217 1 715 243 17 6 chr1 132118813 132118986 -110545367 + MIR SINE MIR 58 232 -30 205 322 23 23 chr1 132119050 132119137 -110545216 - L2 LINE L2 0 3272 3186 346 319 141 0 chr1 132119190 132119403 -110544950 + L1M4 LINE L1 3503 3745 -2401 978 201 53 5 chr1 132119454 132119643 -110544710 + AluJo SINE Alu 85 282 -30 322 297 36 20 chr1 132119713 132119930 -110544423 + L1M4 LINE L1 3832 4054 -2092 875 205 19 38 chr1 132120021 132120231 -110544122 + MER3 DNA MER1_type 1 206 -3 251 323 71 32 chr1 132120283 132120438 -110543915 + MIR SINE MIR 99 259 -3 * 331 274 113 8 chr1 132120428 132120552 -110543801 + L2 LINE L2 3174 3310 -3 206 290 174 7 chr1 132120625 132120722 -110543631 - L3 LINE CR1 -769 808 729 1860 191 55 18 chr1 132120722 132121104 -110543249 + MSTD LTR MaLR 1 396 0 206 290 174 7 chr1 132121104 132121161 -110543192 - L3 LINE CR1 -848 729 628 523 289 71 47 chr1 132121601 132121923 -110542430 - L1ME LINE L1 -418 5752 5423 3781 205 59 19 chr1 132122010 132122953 -110541400 - L1M4c LINE L1 -4639 2007 1027 182 146 0 55 chr1 132122955 132122977 -110541376 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 -29 618 219 23 16 chr1 132122977 132123105 -110541248 + FLAM_A SINE Alu 4 132 -1 182 146 0 55 chr1 132123105 132123137 -110541216 + (TAAAAA)n Simple_repeat Simple_repeat 24 53 0 997 216 38 45 chr1 132123163 132123427 -110540926 - L1M4c LINE L1 -5760 782 521 207 125 0 0 chr1 132123429 132123469 -110540884 + (T)n Simple_repeat Simple_repeat 1 40 0 745 304 39 11 chr1 132123567 132123827 -110540526 - L1M4c LINE L1 -6275 267 1 369 174 10 102 chr1 132123830 132123928 -110540425 - L1ME LINE L1 -724 5440 5352 2409 93 0 3 chr1 132123977 132124288 -110540065 - AluSx SINE Alu -2 310 1 269 255 10 31 chr1 132124468 132124566 -110539787 - L1ME LINE L1 -1771 4375 4280 1444 165 0 0 chr1 132124601 132124819 -110539534 + AluJo SINE Alu 1 218 -94 940 93 5 108 chr1 132124853 132125034 -110539319 - Tigger7 DNA MER2_type -69 2518 2359 1442 188 41 34 chr1 132125034 132125326 -110539027 - AluJo SINE Alu -14 298 5 940 93 5 108 chr1 132125326 132125348 -110539005 - Tigger7 DNA MER2_type -228 2359 2336 806 112 16 32 chr1 132125349 132125474 -110538879 + AluSq/x SINE Alu 3 125 -188 1699 117 4 19 chr1 132125599 132125855 -110538498 + AluSx SINE Alu 45 296 -16 1631 172 10 20 chr1 132126046 132126349 -110538004 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr1 132126502 132126524 -110537829 + AT_rich Low_complexity Low_complexity 1 22 0 1569 136 4 4 chr1 132126629 132126872 -110537481 + AluSx SINE Alu 58 300 -12 2502 72 0 0 chr1 132126965 132127269 -110537084 + AluY SINE Alu 1 304 -7 1118 203 19 31 chr1 132128167 132128428 -110535925 - MIR SINE MIR 0 262 5 2307 100 0 10 chr1 132128521 132128831 -110535522 - AluSq SINE Alu -6 307 1 679 179 43 0 chr1 132128967 132129084 -110535269 + FLAM_A SINE Alu 1 122 -11 2249 112 0 3 chr1 132129484 132129789 -110534564 - AluSx SINE Alu -8 304 1 292 119 0 0 chr1 132130486 132130528 -110533825 + L1MB4 LINE L1 6102 6143 -37 2159 124 3 3 chr1 132133407 132133706 -110530647 + AluSx SINE Alu 3 301 -11 2199 99 16 16 chr1 132133776 132134080 -110530273 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr1 132134333 132134362 -110529991 + AT_rich Low_complexity Low_complexity 1 29 0 1584 169 61 14 chr1 132134466 132134762 -110529591 - AluJo SINE Alu 0 312 3 702 186 90 21 chr1 132134883 132135028 -110529325 - FRAM SINE Alu -11 155 1 1905 157 7 0 chr1 132135583 132135869 -110528484 + AluJo SINE Alu 1 288 -24 453 306 224 27 chr1 132136008 132136385 -110527968 + L2 LINE L2 2137 2438 -875 2406 105 0 0 chr1 132136385 132136691 -110527662 - AluSx SINE Alu -6 306 1 453 306 224 27 chr1 132136691 132137029 -110527324 + L2 LINE L2 2438 2991 -322 568 86 0 0 chr1 132137047 132137128 -110527225 - Alu SINE Alu 0 311 231 5110 81 4 21 chr1 132137178 132137285 -110527068 - LTR12 LTR ERV1 0 688 581 2493 80 0 0 chr1 132137285 132137587 -110526766 + AluY SINE Alu 1 302 -9 5110 81 4 21 chr1 132137587 132138179 -110526174 - LTR12 LTR ERV1 -107 581 1 339 300 58 0 chr1 132138816 132138936 -110525417 + L1MC5 LINE L1 7765 7891 -70 1263 92 46 46 chr1 132138941 132138978 -110525375 - L1MB2 LINE L1 -9 6162 6126 1445 167 156 0 chr1 132138978 132139235 -110525118 - AluJb SINE Alu -5 297 1 1263 92 46 46 chr1 132139235 132139415 -110524938 - L1MB2 LINE L1 -44 6127 5945 3411 126 0 4 chr1 132139438 132139931 -110524422 + LOR1a LTR ERV1 7 497 0 5859 189 27 22 chr1 132139932 132141616 -110522737 - L1MB2 LINE L1 -239 5932 4240 2265 91 0 0 chr1 132141616 132141914 -110522439 - AluSc SINE Alu -11 298 1 5859 189 27 22 chr1 132141914 132142142 -110522211 - L1MB2 LINE L1 -1931 4240 4015 1353 186 53 4 chr1 132142178 132142442 -110521911 - AluJo SINE Alu -35 277 1 754 177 59 2 chr1 132142443 132142619 -110521734 - L1 LINE L1 -2122 4024 3840 230 273 172 20 chr1 132142787 132142886 -110521467 - MIR SINE MIR -25 237 124 832 281 98 32 chr1 132142912 132143409 -110520944 + MLT1H LTR MaLR 17 595 0 2064 89 0 41 chr1 132143436 132143750 -110520603 + AluY SINE Alu 1 301 -10 1491 107 27 5 chr1 132143836 132144060 -110520293 + AluSx SINE Alu 1 229 -83 186 43 0 0 chr1 132144084 132144107 -110520246 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1990 135 0 13 chr1 132144332 132144636 -110519717 - AluJb SINE Alu -12 300 1 1966 130 7 0 chr1 132145936 132146236 -110518117 - AluSx SINE Alu -10 302 1 183 188 125 0 chr1 132146692 132146740 -110517613 - L2 LINE L2 0 3272 3219 345 176 0 18 chr1 132146968 132147041 -110517312 + L1MA9 LINE L1 6195 6272 -27 270 0 0 0 chr1 132147047 132147077 -110517276 + (CA)n Simple_repeat Simple_repeat 1 30 0 200 256 0 0 chr1 132147099 132147138 -110517215 + MIR SINE MIR 73 111 -97 228 291 38 0 chr1 132147276 132147355 -110516998 + MER103 DNA DNA 13 94 -72 234 250 0 18 chr1 132148323 132148379 -110515974 - MIR SINE MIR -56 152 98 33 0 0 0 chr1 132148421 132148454 -110515899 + AT_rich Low_complexity Low_complexity 1 33 0 2116 104 0 0 chr1 132148611 132148925 -110515428 + AluSx SINE Alu 3 316 0 1666 178 140 0 chr1 132149031 132149346 -110515007 + MSTB LTR MaLR 1 359 -67 1111 121 6 0 chr1 132149346 132149512 -110514841 - AluSg/x SINE Alu -9 303 137 441 45 91 15 chr1 132149514 132149580 -110514773 + MSTB1 LTR MaLR 362 432 0 3084 102 47 24 chr1 132150103 132150594 -110513759 - L1MA4A LINE L1 -5 6298 5797 2018 96 7 7 chr1 132151297 132151607 -110512746 + AluSx SINE Alu 1 310 0 2204 95 3 3 chr1 132151687 132151992 -110512361 + AluSc SINE Alu 1 305 -4 2061 121 0 0 chr1 132152003 132152292 -110512061 + AluSx SINE Alu 1 289 -23 332 252 146 0 chr1 132152417 132152520 -110511833 + L2 LINE L2 3196 3313 0 1708 150 36 0 chr1 132154100 132154380 -110509973 + AluSx SINE Alu 1 290 -22 2037 118 7 7 chr1 132154478 132154783 -110509570 + AluSx SINE Alu 1 305 -7 3532 137 36 25 chr1 132154784 132155111 -110509242 + L1MC1 LINE L1 5721 6060 -273 1730 158 3 10 chr1 132155111 132155430 -110508923 + AluJo SINE Alu 1 312 0 3532 137 36 25 chr1 132155430 132155708 -110508645 + L1MC1 LINE L1 6060 6333 0 1131 116 0 0 chr1 132155734 132155889 -110508464 + AluSg/x SINE Alu 136 290 -20 282 352 88 22 chr1 132156723 132156905 -110507448 + MIR SINE MIR 69 262 0 22 0 0 0 chr1 132158342 132158364 -110505989 + AT_rich Low_complexity Low_complexity 1 22 0 193 29 59 0 chr1 132158404 132158438 -110505915 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2028 97 11 0 chr1 132158441 132158719 -110505634 - AluSx SINE Alu -31 281 1 1557 161 35 7 chr1 132158721 132159006 -110505347 - AluJo SINE Alu -19 293 1 447 287 110 7 chr1 132159006 132159142 -110505211 - MIR SINE MIR -96 166 17 524 199 97 68 chr1 132159278 132159328 -110505025 - MIR SINE MIR 0 262 215 2365 62 0 7 chr1 132159328 132159632 -110504721 - AluY SINE Alu -9 302 1 524 199 97 68 chr1 132159632 132159757 -110504596 - MIR SINE MIR -47 215 82 1047 114 7 0 chr1 132159985 132160134 -110504219 - AluSg/x SINE Alu -35 275 126 2349 78 3 0 chr1 132160359 132160705 -110503648 - AluSx SINE Alu 0 347 1 364 228 101 60 chr1 132163654 132163803 -110500550 - L2 LINE L2 -1 3312 3158 2307 83 3 0 chr1 132164387 132164687 -110499666 - AluSp SINE Alu -12 301 1 2082 77 0 11 chr1 132164796 132165069 -110499284 - AluY SINE Alu -20 291 22 201 39 0 0 chr1 132165287 132165313 -110499040 + (CA)n Simple_repeat Simple_repeat 2 27 0 201 175 0 0 chr1 132165666 132165706 -110498647 + GA-rich Low_complexity Low_complexity 2 41 0 2106 107 3 0 chr1 132166476 132166774 -110497579 - AluY SINE Alu -12 299 1 200 120 80 60 chr1 132167019 132167069 -110497284 + MIR SINE MIR 204 254 -8 484 301 59 7 chr1 132169532 132169685 -110494668 + MIR SINE MIR 46 206 -56 388 265 86 53 chr1 132169996 132170153 -110494200 - MIR SINE MIR -27 181 54 2042 103 7 4 chr1 132170153 132170458 -110493895 + AluSq SINE Alu 1 306 0 388 265 86 53 chr1 132170458 132170513 -110493840 - MIR SINE MIR -154 54 2 296 259 24 12 chr1 132170807 132170892 -110493461 + MIR SINE MIR 53 138 -124 195 308 0 0 chr1 132170903 132170955 -110493398 + L2 LINE L2 3252 3303 -10 2492 59 0 0 chr1 132171096 132171403 -110492950 - AluY SINE Alu -4 307 1 1911 139 19 10 chr1 132171434 132171743 -110492610 - AluJb SINE Alu 0 312 1 2461 69 0 0 chr1 132172226 132172532 -110491821 - AluSq SINE Alu -5 308 3 230 247 27 0 chr1 132175265 132175338 -110489015 + (CCCCAG)n Simple_repeat Simple_repeat 2 76 0 1438 165 7 42 chr1 132176001 132176310 -110488043 - AluJo SINE Alu -6 306 9 23 0 0 0 chr1 132176394 132176417 -110487936 + GC_rich Low_complexity Low_complexity 1 23 0 261 298 11 32 chr1 132176587 132176681 -110487672 + L2 LINE L2 2765 2856 -458 1922 131 29 13 chr1 132176708 132177014 -110487339 - AluSx SINE Alu -1 311 1 1492 164 11 15 chr1 132177014 132177277 -110487076 - AluJb SINE Alu -14 298 37 3936 73 4 128 chr1 132177365 132178061 -110486292 + LTR66 LTR ERVL 1 610 0 1733 158 3 10 chr1 132178200 132178497 -110485856 - AluJb SINE Alu -15 297 3 206 327 103 9 chr1 132178504 132178611 -110485742 + L2 LINE L2 3116 3232 -40 1157 78 0 0 chr1 132178851 132179004 -110485349 + L1PA5 LINE L1 6001 6153 -1 801 161 0 0 chr1 132179053 132179177 -110485176 + FLAM_C SINE Alu 2 125 -18 257 206 29 0 chr1 132179180 132179248 -110485105 - L1MC4 LINE L1 -1337 6705 6636 2265 104 3 0 chr1 132179735 132180042 -110484311 + AluSx SINE Alu 1 308 -4 386 273 207 30 chr1 132180227 132180425 -110483928 - MIR SINE MIR -26 236 4 329 303 37 18 chr1 132180438 132180547 -110483806 - MIR3 SINE MIR -84 124 14 393 308 185 63 chr1 132183394 132183638 -110480715 + L2 LINE L2 2952 3237 -35 2328 81 3 0 chr1 132183638 132183936 -110480417 - AluY SINE Alu -12 299 1 393 308 185 63 chr1 132183936 132183977 -110480376 + L2 LINE L2 3237 3272 0 310 286 0 0 chr1 132184314 132184384 -110479969 - L2 LINE L2 0 3313 3244 750 276 122 5 chr1 132184540 132184754 -110479599 - MIR SINE MIR -1 261 23 209 267 0 0 chr1 132186985 132187030 -110477323 + CT-rich Low_complexity Low_complexity 1 45 0 746 217 94 38 chr1 132187810 132187870 -110476483 - MIR SINE MIR -12 250 195 2332 57 0 0 chr1 132187870 132188194 -110476159 - AluY SINE Alu 0 324 1 746 217 94 38 chr1 132188194 132188344 -110476009 - MIR SINE MIR -67 195 27 2060 108 3 7 chr1 132189040 132189337 -110475016 - AluSq SINE Alu -17 296 1 609 275 198 0 chr1 132189347 132189554 -110474799 - MIR SINE MIR -14 248 1 2187 95 20 3 chr1 132189784 132190089 -110474264 - AluSq SINE Alu -3 310 1 546 16 0 0 chr1 132192605 132192668 -110471685 + (CA)n Simple_repeat Simple_repeat 2 64 0 1966 100 12 47 chr1 132193240 132193276 -110471077 - AluSp SINE Alu -5 308 272 228 67 0 0 chr1 132193276 132193306 -110471047 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1966 100 12 47 chr1 132193306 132193588 -110470765 - AluSp SINE Alu -41 272 1 1320 161 4 25 chr1 132193995 132194237 -110470116 - AluJo SINE Alu -37 275 39 193 296 0 91 chr1 132194486 132194574 -110469779 - L2 LINE L2 -7 3306 3227 311 211 11 0 chr1 132194611 132194706 -110469647 + (TA)n Simple_repeat Simple_repeat 1 96 0 2369 65 0 0 chr1 132194884 132195178 -110469175 - AluY SINE Alu -17 294 1 1830 145 0 23 chr1 132195180 132195483 -110468870 - AluJo SINE Alu -16 296 1 1699 153 0 43 chr1 132195528 132195828 -110468525 - AluSx SINE Alu -25 287 1 2132 65 0 7 chr1 132196672 132196948 -110467405 + AluY SINE Alu 38 311 0 2212 90 0 7 chr1 132196958 132197257 -110467096 + AluSx SINE Alu 1 297 -15 1794 121 64 0 chr1 132199202 132199528 -110464825 - AluSx SINE Alu 0 343 1 1025 153 56 5 chr1 132199827 132199917 -110464436 - Charlie5 DNA MER1_type 0 2624 2540 2043 111 24 3 chr1 132199917 132200215 -110464138 + AluSx SINE Alu 3 306 -6 1025 153 56 5 chr1 132200215 132200340 -110464013 - Charlie5 DNA MER1_type -84 2540 2398 656 168 226 0 chr1 132200472 132200627 -110463726 + MIR SINE MIR 2 191 -71 22 0 0 0 chr1 132200627 132200649 -110463704 + AT_rich Low_complexity Low_complexity 1 22 0 2198 88 0 26 chr1 132200649 132200957 -110463396 - AluSx SINE Alu -12 300 1 598 44 11 44 chr1 132200958 132201048 -110463305 - MER2 DNA MER2_type -164 181 95 986 154 37 42 chr1 132201052 132201266 -110463087 - AluJo SINE Alu -14 298 86 565 206 0 0 chr1 132201266 132201363 -110462990 - MER2 DNA MER2_type -247 98 2 2113 123 0 3 chr1 132201375 132201677 -110462676 - AluSx SINE Alu -11 301 1 1876 158 3 3 chr1 132201697 132202008 -110462345 - AluJb SINE Alu 0 312 2 2187 108 3 3 chr1 132202112 132202419 -110461934 - AluSq SINE Alu -6 307 1 332 140 0 18 chr1 132202513 132202570 -110461783 - L2 LINE L2 -1 3312 3257 776 291 89 52 chr1 132202773 132202862 -110461491 + MER20B DNA MER1_type 7 91 -692 2876 96 73 2 chr1 132202862 132203298 -110461055 + L1PA11 LINE L1 5708 6174 0 776 291 89 52 chr1 132203298 132203483 -110460870 + MER20B DNA MER1_type 91 300 -483 1929 125 0 14 chr1 132203483 132203795 -110460558 - AluJb SINE Alu 0 308 1 776 291 89 52 chr1 132203795 132203865 -110460488 + MER20B DNA MER1_type 300 366 -417 696 168 30 15 chr1 132203865 132203996 -110460357 + FLAM_C SINE Alu 1 133 0 255 250 202 24 chr1 132204016 132204140 -110460213 + MER20B DNA MER1_type 348 493 -290 213 88 0 0 chr1 132204208 132204219 -110460134 + (TA)n Simple_repeat Simple_repeat 1 11 -23 1888 100 22 48 chr1 132204219 132204530 -110459823 + AluSx SINE Alu 1 303 -9 213 88 0 0 chr1 132204530 132204552 -110459801 + (TA)n Simple_repeat Simple_repeat 10 34 0 362 248 76 9 chr1 132204563 132204668 -110459685 + MER20B DNA MER1_type 669 780 -3 2059 117 0 13 chr1 132204994 132205301 -110459052 + AluSx SINE Alu 1 303 -9 2455 42 7 3 chr1 132206154 132206464 -110457889 - AluY SINE Alu 0 311 1 1731 172 10 0 chr1 132207415 132207705 -110456648 + AluJb SINE Alu 1 293 -19 261 122 0 24 chr1 132207705 132207746 -110456607 + AluSc SINE Alu 132 171 -128 411 188 0 0 chr1 132207746 132207810 -110456543 + AluJ/FRAM SINE Alu 226 289 -23 411 99 88 0 chr1 132207823 132208110 -110456243 + (TA)n Simple_repeat Simple_repeat 1 312 0 596 139 168 0 chr1 132208822 132208923 -110455430 - AluJb SINE Alu -194 118 1 2113 117 3 0 chr1 132208946 132209245 -110455108 - AluSx SINE Alu -12 300 1 2479 122 16 5 chr1 132211114 132211197 -110453156 + L1MA9 LINE L1 5860 5941 -371 2136 96 24 0 chr1 132211197 132211488 -110452865 + AluSx SINE Alu 1 298 -14 2479 122 16 5 chr1 132211488 132211788 -110452565 + L1MA9 LINE L1 5941 6247 -65 351 255 170 9 chr1 132211894 132212000 -110452353 + L2 LINE L2 3191 3313 0 2070 112 20 0 chr1 132212618 132212912 -110451441 + AluSx SINE Alu 1 300 -12 1616 76 31 0 chr1 132215503 132215726 -110448627 - AluSc SINE Alu -79 230 1 4950 26 3 0 chr1 132215792 132216357 -110447996 + L1PA3 LINE L1 5584 6150 -5 201 301 133 31 chr1 132216612 132216808 -110447545 - L2 LINE L2 -77 3236 3021 1868 139 0 0 chr1 132217413 132217687 -110446666 + AluSx SINE Alu 6 279 -33 301 268 0 14 chr1 132217887 132217958 -110446395 + MIR SINE MIR 54 123 -85 25 0 0 0 chr1 132218159 132218184 -110446169 + AT_rich Low_complexity Low_complexity 1 25 0 2197 70 7 26 chr1 132218472 132218774 -110445579 - AluY SINE Alu -15 296 1 1157 175 18 5 chr1 132220949 132221166 -110443187 + AluJo SINE Alu 84 303 -9 22 0 0 0 chr1 132223540 132223562 -110440791 + AT_rich Low_complexity Low_complexity 1 22 0 513 90 0 0 chr1 132223568 132223635 -110440718 + AluSg/x SINE Alu 154 220 -90 1196 95 0 6 chr1 132223635 132223803 -110440550 + AluSg/x SINE Alu 133 299 -13 1763 83 0 143 chr1 132223923 132224272 -110440081 - AluSx SINE Alu -13 299 1 265 213 330 11 chr1 132224281 132224375 -110439978 - FLAM_A SINE Alu -9 124 1 196 249 53 111 chr1 132224487 132224549 -110439804 + L2 LINE L2 2888 2952 -361 1891 123 7 0 chr1 132224549 132224842 -110439511 - AluSx SINE Alu -16 296 2 196 249 53 111 chr1 132224842 132224898 -110439455 + L2 LINE L2 2952 2994 -319 2172 92 10 10 chr1 132224898 132225203 -110439150 - AluSg SINE Alu -5 305 1 196 249 53 111 chr1 132225203 132225272 -110439081 + L2 LINE L2 2994 3065 -248 1217 174 13 13 chr1 132225311 132225535 -110438818 - AluJb SINE Alu -6 306 83 403 316 70 32 chr1 132225545 132225703 -110438650 + L2 LINE L2 3150 3313 0 1615 185 3 10 chr1 132226057 132226359 -110437994 + AluJo SINE Alu 1 300 -12 379 326 183 32 chr1 132226402 132226582 -110437771 - L2 LINE L2 -577 2737 2586 2062 120 0 0 chr1 132226582 132226873 -110437480 + AluSq SINE Alu 1 291 -22 379 326 183 32 chr1 132226873 132226961 -110437392 - L2 LINE L2 -728 2586 2513 2242 80 0 0 chr1 132226961 132227274 -110437079 + AluSq SINE Alu 1 313 0 379 326 183 32 chr1 132227274 132227533 -110436820 - L2 LINE L2 -801 2513 2128 2081 104 0 10 chr1 132227605 132227902 -110436451 - AluSg SINE Alu -16 294 1 6530 99 22 22 chr1 132227956 132228925 -110435428 + LTR5 LTR ERVK 1 969 0 21 57 0 0 chr1 132228981 132229016 -110435337 + AT_rich Low_complexity Low_complexity 1 35 0 2183 78 3 0 chr1 132229833 132230117 -110434236 + AluSc SINE Alu 2 286 -23 784 247 0 0 chr1 132230126 132230296 -110434057 + FRAM SINE Alu 1 165 -11 2249 93 0 3 chr1 132230523 132230823 -110433530 + AluSg SINE Alu 1 299 -11 285 190 35 0 chr1 132231310 132231368 -110432985 + L3 LINE CR1 1333 1392 -185 375 272 59 0 chr1 132231395 132231513 -110432840 + MIR SINE MIR 34 157 -63 696 160 0 96 chr1 132231526 132231682 -110432671 - L2 LINE L2 -5 3308 3168 581 271 0 0 chr1 132231660 132231789 -110432564 - L2 LINE L2 -1080 2234 2106 * 305 225 0 90 chr1 132231822 132231911 -110432442 + L1ME LINE L1 5277 5357 -2451 1814 144 10 3 chr1 132231921 132232213 -110432140 + AluSx SINE Alu 3 296 -16 691 300 38 12 chr1 132232239 132232559 -110431794 + L1ME LINE L1 5449 5776 -345 28 48 0 0 chr1 132232563 132232605 -110431748 + AT_rich Low_complexity Low_complexity 1 42 0 2023 108 7 3 chr1 132232745 132233031 -110431322 - AluSq SINE Alu -21 292 6 1667 146 3 104 chr1 132233116 132233316 -110431037 - AluSx SINE Alu 0 302 148 2235 91 3 10 chr1 132233316 132233625 -110430728 - AluSc SINE Alu -2 307 1 913 148 0 0 chr1 132233625 132233760 -110430593 - AluSq/x SINE Alu -177 135 1 2309 117 0 0 chr1 132234027 132234326 -110430027 - AluSx SINE Alu -13 299 1 834 244 14 19 chr1 132234445 132234658 -110429695 + MIR SINE MIR 47 258 -4 2347 78 0 3 chr1 132234663 132234957 -110429396 - AluY SINE Alu -18 293 1 2069 116 3 32 chr1 132236527 132236838 -110427515 + AluJo SINE Alu 1 302 -10 1981 148 3 10 chr1 132236848 132237146 -110427207 + AluJo SINE Alu 1 296 -16 1975 171 0 3 chr1 132237519 132237822 -110426531 + AluJb SINE Alu 1 302 -10 1786 100 122 11 chr1 132237822 132238092 -110426261 + AluSx SINE Alu 1 300 -12 2346 99 0 6 chr1 132238239 132238551 -110425802 + AluSx SINE Alu 1 310 -2 1293 98 0 83 chr1 132238580 132238784 -110425569 + AluY SINE Alu 1 187 -124 340 125 0 0 chr1 132238885 132238933 -110425420 - Alu SINE Alu -254 48 1 478 293 38 8 chr1 132239035 132239168 -110425185 - L2 LINE L2 0 3272 3136 416 263 0 0 chr1 132239461 132239556 -110424797 - MIR3 SINE MIR -3 205 111 26 0 0 0 chr1 132240447 132240473 -110423880 + AT_rich Low_complexity Low_complexity 1 26 0 747 259 110 4 chr1 132240640 132240876 -110423477 - MIR SINE MIR 0 262 2 1846 198 43 56 chr1 132241119 132241584 -110422769 + LTR40c LTR ERVL 7 465 0 493 310 55 17 chr1 132241729 132242067 -110422286 - L2 LINE L2 -197 3075 2724 2031 115 3 48 chr1 132242255 132242567 -110421786 - AluJb SINE Alu -14 298 1 236 214 95 36 chr1 132242621 132242705 -110421648 - LTR16B LTR ERVL -4 460 372 843 182 0 83 chr1 132242743 132242871 -110421482 - MER20 DNA MER1_type -43 176 68 1706 159 60 0 chr1 132242871 132243154 -110421199 + AluJb SINE Alu 1 300 -12 843 182 0 83 chr1 132243154 132243217 -110421136 - MER20 DNA MER1_type -151 68 1 1639 78 5 9 chr1 132243255 132243472 -110420881 + AluSq SINE Alu 81 296 -17 2025 80 26 70 chr1 132244947 132245259 -110419094 - AluSq SINE Alu -15 298 1 21 36 0 0 chr1 132245394 132245422 -110418931 + AT_rich Low_complexity Low_complexity 1 28 0 215 59 0 29 chr1 132245599 132245633 -110418720 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1254 165 21 5 chr1 132245669 132245863 -110418490 - AluJo SINE Alu -31 281 85 1774 166 0 17 chr1 132246007 132246302 -110418051 - AluJb SINE Alu -18 294 5 3143 191 19 38 chr1 132246628 132246971 -110417382 + L1P LINE L1 3161 3509 -2637 1747 179 3 10 chr1 132246971 132247278 -110417075 + AluJb SINE Alu 1 305 -7 3143 191 19 38 chr1 132247278 132247560 -110416793 + L1P LINE L1 3509 3772 -2374 1990 152 3 0 chr1 132247560 132247862 -110416491 + AluSx SINE Alu 1 303 -9 3143 191 19 38 chr1 132247862 132247982 -110416371 + L1P LINE L1 3772 3893 -2253 1023 211 14 14 chr1 132247986 132248204 -110416149 + AluJo SINE Alu 1 218 -94 2271 97 7 0 chr1 132248261 132248551 -110415802 + AluSc SINE Alu 1 292 -17 854 90 97 0 chr1 132248554 132248698 -110415655 + L1MA8 LINE L1 6099 6256 -35 256 120 80 80 chr1 132248801 132248876 -110415477 + L1MA8 LINE L1 6201 6275 -16 2120 127 0 10 chr1 132249414 132249721 -110414632 - AluJb SINE Alu -8 304 1 1830 126 51 7 chr1 132249998 132250292 -110414061 + AluSx SINE Alu 1 307 -5 878 114 8 0 chr1 132250718 132250841 -110413512 - FLAM_C SINE Alu -19 124 1 213 285 0 32 chr1 132251794 132251917 -110412436 + (CCG)n Simple_repeat Simple_repeat 2 120 0 532 224 208 46 chr1 132252905 132253051 -110411302 - L1ME4a LINE L1 -72 6049 5928 2287 89 0 13 chr1 132253051 132253354 -110410999 - AluSg SINE Alu -6 304 6 532 224 208 46 chr1 132253354 132253644 -110410709 - L1ME4a LINE L1 -193 5928 5542 333 235 189 26 chr1 132255035 132255188 -110409165 - L2 LINE L2 -18 3295 3118 1823 135 0 39 chr1 132255318 132255426 -110408927 + AluSx SINE Alu 36 147 -165 2527 70 0 0 chr1 132255426 132255728 -110408625 + AluY SINE Alu 1 302 -9 1823 135 0 39 chr1 132255728 132255900 -110408453 + AluSx SINE Alu 147 305 -7 410 306 139 14 chr1 132255924 132256140 -110408213 - L2 LINE L2 -211 3061 2819 371 145 16 0 chr1 132256145 132256207 -110408146 + 5S rRNA rRNA 37 99 -22 318 341 128 12 chr1 132256212 132256376 -110407977 - L2 LINE L2 -501 2813 2631 530 315 163 58 chr1 132257107 132257726 -110406627 + L2 LINE L2 2265 2948 -366 287 308 22 0 chr1 132257920 132258011 -110406342 - L2 LINE L2 -528 2786 2694 813 313 126 54 chr1 132258302 132258515 -110405838 - L2 LINE L2 -660 2654 2458 2178 121 3 0 chr1 132258515 132258812 -110405541 + AluSx SINE Alu 1 298 -14 813 313 126 54 chr1 132258812 132258824 -110405529 - L2 LINE L2 -856 2458 2448 1896 146 17 0 chr1 132258824 132259111 -110405242 + AluJb SINE Alu 6 297 -15 813 313 126 54 chr1 132259111 132259234 -110405119 - L2 LINE L2 -866 2448 2335 2308 91 14 0 chr1 132259234 132259530 -110404823 + AluSx SINE Alu 1 300 -12 813 313 126 54 chr1 132259530 132259758 -110404595 - L2 LINE L2 -979 2335 2125 1882 149 20 7 chr1 132259758 132260053 -110404300 + AluJo SINE Alu 1 299 -13 813 313 126 54 chr1 132260053 132260740 -110403613 - L2 LINE L2 -1189 2125 1278 2143 111 13 7 chr1 132260740 132261038 -110403315 + AluSq SINE Alu 1 300 -13 813 313 126 54 chr1 132261038 132261151 -110403202 - L2 LINE L2 -2036 1278 1175 1993 127 24 21 chr1 132261954 132262286 -110402067 - Tigger3(Golem) DNA MER2_type -1 3028 2696 225 0 0 0 chr1 132262429 132262454 -110401899 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2130 65 38 4 chr1 132262468 132262731 -110401622 - AluY SINE Alu -39 272 1 791 190 68 153 chr1 132262731 132263019 -110401334 - LTR16B LTR ERVL -199 265 1 2241 115 0 0 chr1 132263116 132263411 -110400942 - AluSx SINE Alu -16 296 2 310 98 0 0 chr1 132263582 132263623 -110400730 + MER4A LTR ERV1 554 594 -70 30 0 0 0 chr1 132263623 132263653 -110400700 + AT_rich Low_complexity Low_complexity 1 30 0 361 246 231 0 chr1 132264089 132264219 -110400134 - MIR3 SINE MIR -6 202 43 2378 95 3 0 chr1 132264681 132264976 -110399377 - AluSx SINE Alu -16 296 1 1721 185 3 14 chr1 132264983 132265280 -110399073 - AluJo SINE Alu -18 294 1 2130 187 73 17 chr1 132265656 132265841 -110398512 + MLT1D LTR MaLR 3 176 -329 1690 167 3 30 chr1 132265841 132266140 -110398213 + AluJo SINE Alu 5 295 -17 2130 187 73 17 chr1 132266140 132266430 -110397923 + MLT1D LTR MaLR 176 505 0 353 235 224 17 chr1 132266854 132267033 -110397320 - MIR SINE MIR -27 235 20 278 224 0 35 chr1 132267089 132267147 -110397206 + L2 LINE L2 3151 3206 -66 289 205 0 64 chr1 132267175 132267253 -110397100 - MIR SINE MIR -130 132 60 267 31 0 0 chr1 132267386 132267418 -110396935 + (CATA)n Simple_repeat Simple_repeat 2 33 0 241 241 35 0 chr1 132268231 132268289 -110396064 + L2 LINE L2 3230 3289 -24 253 261 31 0 chr1 132268525 132268590 -110395763 - MIR SINE MIR -131 131 65 242 253 13 0 chr1 132269824 132269903 -110394450 + (CGG)n Simple_repeat Simple_repeat 3 82 0 400 242 17 58 chr1 132270391 132270511 -110393842 - MIR3 SINE MIR -40 168 54 222 365 21 48 chr1 132270598 132270743 -110393610 - MIR SINE MIR -121 141 1 216 135 0 0 chr1 132270948 132270985 -110393368 + (CA)n Simple_repeat Simple_repeat 1 37 0 1359 194 47 0 chr1 132271862 132272115 -110392238 + AluJo SINE Alu 36 300 -12 23 0 0 0 chr1 132272237 132272260 -110392093 + AT_rich Low_complexity Low_complexity 1 23 0 2246 101 3 19 chr1 132273201 132273517 -110390836 + AluSx SINE Alu 1 311 -1 2267 101 0 0 chr1 132273791 132274077 -110390276 + AluSx SINE Alu 2 287 -25 202 135 27 0 chr1 132274116 132274153 -110390200 + L2 LINE L2 3224 3261 -11 1599 179 7 24 chr1 132274262 132274553 -110389800 + AluJb SINE Alu 18 303 -9 2274 113 0 0 chr1 132275059 132275352 -110389001 + AluSx SINE Alu 1 293 -19 759 165 0 8 chr1 132276100 132276221 -110388132 - FLAM_A SINE Alu -17 125 6 2068 224 31 8 chr1 132276314 132276797 -110387556 - L1M4 LINE L1 -1687 4459 3966 238 269 167 0 chr1 132276912 132276990 -110387363 + L2 LINE L2 3163 3253 -19 1176 167 12 61 chr1 132277572 132277587 -110386766 - AluJo SINE Alu -4 308 294 538 14 28 0 chr1 132277587 132277658 -110386695 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 1176 167 12 61 chr1 132277658 132277887 -110386466 - AluJo SINE Alu -18 294 76 215 260 0 0 chr1 132278054 132278104 -110386249 + MIR SINE MIR 200 249 -13 274 312 184 9 chr1 132278369 132278478 -110385875 - L2 LINE L2 -18 3254 3127 4375 142 91 15 chr1 132278558 132279480 -110384873 + L1MA4 LINE L1 5171 6161 -139 1540 146 58 8 chr1 132279482 132279743 -110384610 + AluSx SINE Alu 22 295 -17 803 162 26 26 chr1 132279745 132279899 -110384454 + AluSg/x SINE Alu 136 289 -21 228 232 168 32 chr1 132279900 132280025 -110384328 - L2 LINE L2 -619 2695 2554 302 254 55 27 chr1 132281857 132281967 -110382386 + MIR SINE MIR 93 205 -57 215 204 23 0 chr1 132285132 132285176 -110379177 + MIR SINE MIR 107 151 -111 351 161 313 9 chr1 132285302 132285414 -110378939 - MER3 DNA MER1_type -59 150 5 1159 108 13 0 chr1 132285481 132285639 -110378714 - AluSg/x SINE Alu -16 294 135 718 195 40 7 chr1 132286112 132286261 -110378092 - FRAM SINE Alu 0 176 23 2273 129 0 0 chr1 132286437 132286747 -110377606 + AluSx SINE Alu 2 311 -1 1364 183 33 70 chr1 132287049 132287201 -110377152 + AluJo SINE Alu 1 138 -174 222 91 0 0 chr1 132287201 132287234 -110377119 + (CA)n Simple_repeat Simple_repeat 2 34 0 1364 183 33 70 chr1 132287234 132287381 -110376972 + AluJo SINE Alu 138 289 -23 291 322 70 28 chr1 132292359 132292502 -110371851 + L3b LINE CR1 1433 1581 -2 2353 108 0 7 chr1 132293494 132293800 -110370553 + AluSx SINE Alu 1 304 -8 300 130 111 0 chr1 132293890 132293944 -110370409 - L2 LINE L2 0 3272 3213 208 224 0 97 chr1 132294502 132294636 -110369717 + GA-rich Low_complexity Low_complexity 4 124 0 242 302 6 53 chr1 132296946 132297115 -110367238 + C-rich Low_complexity Low_complexity 2 162 0 22 35 0 0 chr1 132298083 132298112 -110366241 + GC_rich Low_complexity Low_complexity 1 29 0 2252 76 7 33 chr1 132298709 132299012 -110365341 - AluSg SINE Alu -15 295 1 182 248 352 19 chr1 132299088 132299193 -110365160 - L2 LINE L2 -4 3268 3129 428 292 36 12 chr1 132299578 132299746 -110364607 + L1ME1 LINE L1 5965 6136 -30 * 591 130 23 130 chr1 132299616 132299793 -110364560 + L1MA10 LINE L1 6168 6325 -9 2345 19 59 4 chr1 132299797 132300067 -110364286 + AluY SINE Alu 1 285 -26 430 279 65 23 chr1 132303367 132303567 -110360786 - MIR SINE MIR -31 231 31 350 140 0 0 chr1 132305267 132305324 -110359029 - L2 LINE L2 0 3313 3257 183 330 35 35 chr1 132305359 132305474 -110358879 - L3 LINE CR1 -69 1508 1394 2554 83 0 0 chr1 132305567 132305880 -110358473 + AluSp SINE Alu 1 313 0 1951 150 3 16 chr1 132305931 132306237 -110358116 + AluJb SINE Alu 1 302 -10 2254 102 7 13 chr1 132306239 132306543 -110357810 + AluSp SINE Alu 1 302 -11 647 273 85 39 chr1 132306544 132306804 -110357549 - L2 LINE L2 -89 3224 2953 2325 103 0 10 chr1 132306972 132307272 -110357081 + AluSg SINE Alu 1 297 -13 23 0 0 0 chr1 132307416 132307439 -110356914 + AT_rich Low_complexity Low_complexity 1 23 0 1861 166 17 3 chr1 132307478 132307779 -110356574 - AluJb SINE Alu -7 305 1 4653 157 19 102 chr1 132307806 132307925 -110356428 - L1MC3 LINE L1 -2 7783 7656 2635 38 10 13 chr1 132307925 132308238 -110356115 + AluSq SINE Alu 1 312 -1 2355 66 16 10 chr1 132308239 132308543 -110355810 + AluSp SINE Alu 2 307 -6 4653 157 19 102 chr1 132308543 132309020 -110355333 - L1MC3 LINE L1 -129 7656 7141 2663 68 0 0 chr1 132309020 132309330 -110355023 + AluSg SINE Alu 1 310 0 4653 157 19 102 chr1 132309330 132309441 -110354912 - L1MC3 LINE L1 -644 7141 7022 2480 65 7 0 chr1 132309441 132309733 -110354620 + AluSp SINE Alu 7 300 -13 4653 157 19 102 chr1 132309733 132310018 -110354335 - L1MC3 LINE L1 -763 7022 6905 1490 168 48 60 chr1 132310018 132310334 -110354019 - AluJb SINE Alu 0 312 1 4653 157 19 102 chr1 132310334 132310556 -110353797 - L1MC3 LINE L1 -880 6905 6666 2183 141 0 0 chr1 132310765 132311064 -110353289 + AluJb SINE Alu 1 299 -13 388 221 12 23 chr1 132311098 132311184 -110353169 + L3 LINE CR1 1491 1575 -2 1547 148 107 22 chr1 132311215 132311486 -110352867 + AluJb SINE Alu 8 301 -11 228 282 0 39 chr1 132311540 132311618 -110352735 + L2 LINE L2 3194 3268 -4 890 173 64 0 chr1 132311705 132311861 -110352492 + FRAM SINE Alu 1 166 -10 839 117 0 44 chr1 132313034 132313171 -110351182 - FLAM_C SINE Alu -1 132 2 2026 131 0 43 chr1 132313327 132313632 -110350721 + AluSx SINE Alu 1 292 -20 2140 116 7 7 chr1 132313632 132313924 -110350429 + AluSg SINE Alu 1 292 -18 2512 80 0 3 chr1 132313969 132314269 -110350084 + AluSc SINE Alu 1 299 -10 300 210 0 0 chr1 132315351 132315432 -110348921 + GA-rich Low_complexity Low_complexity 3 83 0 1552 166 23 46 chr1 132317325 132317627 -110346726 + AluJo SINE Alu 4 298 -14 2297 93 4 0 chr1 132318369 132318673 -110345680 - AluSg SINE Alu 0 306 2 565 188 8 45 chr1 132318827 132318960 -110345393 + FLAM_C SINE Alu 3 130 -3 369 290 14 22 chr1 132319252 132319390 -110344963 + MIR3 SINE MIR 54 190 -18 546 266 93 40 chr1 132321400 132321648 -110342705 - MER102b DNA MER1_type -9 332 72 207 0 0 0 chr1 132321660 132321683 -110342670 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2163 121 7 0 chr1 132321687 132321976 -110342377 - AluSp SINE Alu -22 291 1 1735 112 127 7 chr1 132323011 132323287 -110341066 + AluSg1 SINE Alu 1 309 0 1871 146 23 26 chr1 132324016 132324325 -110340028 + AluSx SINE Alu 5 312 0 825 243 59 14 chr1 132324391 132324613 -110339740 - MIR SINE MIR -30 232 1 2426 83 3 10 chr1 132324634 132324947 -110339406 - AluSx SINE Alu -1 311 1 960 188 12 0 chr1 132325295 132325460 -110338893 + FAM SINE Alu 1 40 -9 2249 110 10 3 chr1 132325661 132325962 -110338391 - AluSx SINE Alu -9 303 1 2218 91 7 0 chr1 132326488 132326774 -110337579 + AluSp SINE Alu 25 312 -1 1976 137 10 3 chr1 132326801 132327093 -110337260 + AluJb SINE Alu 1 294 -18 410 246 231 0 chr1 132527420 132527550 -110136803 - MIR3 SINE MIR -6 202 43 2246 86 3 0 chr1 132528012 132528302 -110136051 - AluSx SINE Alu -16 296 6 1610 185 3 14 chr1 132528314 132528611 -110135742 - AluJo SINE Alu -18 294 1 2130 187 73 17 chr1 132528987 132529172 -110135181 + MLT1D LTR MaLR 3 176 -329 1592 164 3 30 chr1 132529172 132529471 -110134882 + AluJo SINE Alu 5 295 -17 2130 187 73 17 chr1 132529471 132529761 -110134592 + MLT1D LTR MaLR 176 505 0 426 235 224 17 chr1 132530185 132530364 -110133989 - MIR SINE MIR -27 235 20 315 220 352 22 chr1 132530420 132530511 -110133842 + L2 LINE L2 3151 3271 -1 * 317 205 0 64 chr1 132530506 132530584 -110133769 - MIR SINE MIR -130 132 60 267 31 0 0 chr1 132530717 132530749 -110133604 + (CATA)n Simple_repeat Simple_repeat 2 33 0 263 227 27 27 chr1 132531562 132531637 -110132716 + L2 LINE L2 3193 3267 -5 279 261 31 0 chr1 132531856 132531921 -110132432 - MIR SINE MIR -131 131 65 242 253 13 0 chr1 132533155 132533234 -110131119 + (CGG)n Simple_repeat Simple_repeat 3 82 0 441 242 17 58 chr1 132533722 132533842 -110130511 - MIR3 SINE MIR -40 168 54 277 320 153 35 chr1 132533846 132534074 -110130279 - MIR SINE MIR -7 255 1 216 135 0 0 chr1 132534279 132534316 -110130037 + (CA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chr1 132538029 132538052 -110126301 + (G)n Simple_repeat Simple_repeat 1 23 0 466 242 105 52 chr1 132539112 132539341 -110125012 - MIR SINE MIR -13 249 18 375 140 0 0 chr1 132540925 132540982 -110123371 - L2 LINE L2 0 3313 3257 212 330 35 35 chr1 132541017 132541132 -110123221 - L3 LINE CR1 -69 1508 1394 2391 83 0 0 chr1 132541225 132541538 -110122815 + AluSp SINE Alu 1 313 0 1795 150 3 16 chr1 132541589 132541895 -110122458 + AluJb SINE Alu 1 302 -10 2153 97 13 10 chr1 132541897 132542206 -110122147 + AluSp SINE Alu 1 310 -3 691 302 71 20 chr1 132542226 132542572 -110121781 - L1ME LINE L1 -345 5776 5370 1629 159 17 7 chr1 132542572 132542862 -110121491 - AluSx SINE Alu -17 295 3 691 302 71 20 chr1 132542862 132542961 -110121392 - L1ME LINE L1 -751 5370 5277 581 271 0 0 chr1 132542994 132543123 -110121230 + L2 LINE L2 2106 2234 -1080 * 696 160 0 96 chr1 132543101 132543257 -110121096 + L2 LINE L2 3168 3308 -5 375 272 59 0 chr1 132543270 132543388 -110120965 - MIR SINE MIR -63 145 34 285 190 35 0 chr1 132543415 132543473 -110120880 - L3 LINE CR1 -185 1392 1333 2249 93 0 3 chr1 132543960 132544260 -110120093 - AluSg SINE Alu -11 299 1 784 247 0 0 chr1 132544487 132544657 -110119696 - FRAM SINE Alu -11 165 1 2136 91 3 0 chr1 132544666 132544951 -110119402 - AluSc SINE Alu -23 286 1 24 0 0 0 chr1 132544951 132544975 -110119378 + AT_rich Low_complexity Low_complexity 1 24 0 412 294 32 23 chr1 132545106 132545327 -110119026 - AluSp SINE Alu -20 283 61 22 35 0 0 chr1 132545394 132545423 -110118930 + AT_rich Low_complexity Low_complexity 1 29 0 729 237 6 0 chr1 132545990 132546146 -110118207 - L1ME LINE L1 -430 5740 5584 808 115 0 0 chr1 132546809 132546922 -110117431 + AluSq/x SINE Alu 1 113 -199 1839 92 0 0 chr1 132546922 132547162 -110117191 + AluSx SINE Alu 54 293 -19 588 155 144 0 chr1 132547186 132547283 -110117070 - FLAM_C SINE Alu -24 119 9 240 372 25 0 chr1 132548415 132548536 -110115817 + L2 LINE L2 2522 2645 -669 2194 97 0 10 chr1 132548901 132549201 -110115152 + AluSg SINE Alu 1 297 -13 23 0 0 0 chr1 132549345 132549368 -110114985 + AT_rich Low_complexity Low_complexity 1 23 0 1702 156 17 13 chr1 132549407 132549708 -110114645 - AluJb SINE Alu -10 302 1 4895 155 20 108 chr1 132549735 132549854 -110114499 - L1MC3 LINE L1 -2 7783 7655 2466 39 10 13 chr1 132549854 132550166 -110114187 + AluSq SINE Alu 1 311 -2 2188 66 16 10 chr1 132550167 132550470 -110113883 + AluSp SINE Alu 2 306 -7 4895 155 20 108 chr1 132550470 132550947 -110113406 - L1MC3 LINE L1 -130 7655 7138 2476 68 0 0 chr1 132550947 132551254 -110113099 + AluSg SINE Alu 1 307 -3 4895 155 20 108 chr1 132551254 132551369 -110112984 - L1MC3 LINE L1 -647 7138 7014 2325 65 7 0 chr1 132551369 132551661 -110112692 + AluSp SINE Alu 7 300 -13 4895 155 20 108 chr1 132551661 132551948 -110112405 - L1MC3 LINE L1 -771 7014 6906 1330 172 48 54 chr1 132551948 132552262 -110112091 - AluJb SINE Alu 0 312 1 4895 155 20 108 chr1 132552262 132552484 -110111869 - L1MC3 LINE L1 -879 6906 6666 2027 141 0 0 chr1 132552693 132552992 -110111361 + AluJb SINE Alu 1 299 -13 409 221 12 23 chr1 132553026 132553112 -110111241 + L3 LINE CR1 1491 1575 -2 1407 147 107 26 chr1 132553143 132553415 -110110938 + AluJb SINE Alu 8 301 -11 245 282 0 39 chr1 132553469 132553547 -110110806 + L2 LINE L2 3194 3268 -4 809 173 64 0 chr1 132553634 132553790 -110110563 + FRAM SINE Alu 1 166 -10 881 117 0 44 chr1 132554963 132555100 -110109253 - FLAM_C SINE Alu -1 132 2 1870 131 0 43 chr1 132555257 132555562 -110108791 + AluSx SINE Alu 1 292 -20 1984 116 7 7 chr1 132555562 132555854 -110108499 + AluSg SINE Alu 1 292 -18 2354 80 0 3 chr1 132555899 132556199 -110108154 + AluSc SINE Alu 1 299 -10 300 210 0 0 chr1 132557281 132557362 -110106991 + GA-rich Low_complexity Low_complexity 3 83 0 1405 166 23 46 chr1 132559255 132559557 -110104796 + AluJo SINE Alu 4 298 -14 2146 93 4 0 chr1 132560299 132560603 -110103750 - AluSg SINE Alu 0 306 2 605 187 8 45 chr1 132560757 132560891 -110103462 + FLAM_C SINE Alu 3 131 -2 396 290 14 22 chr1 132561183 132561321 -110103032 + MIR3 SINE MIR 54 190 -18 573 262 93 40 chr1 132563331 132563579 -110100774 - MER102b DNA MER1_type -9 332 72 207 0 0 0 chr1 132563591 132563614 -110100739 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2011 121 7 0 chr1 132563618 132563907 -110100446 - AluSp SINE Alu -22 291 1 1709 113 128 4 chr1 132564942 132565208 -110099145 + AluSc SINE Alu 1 299 0 1762 146 23 23 chr1 132565946 132566254 -110098099 + AluSx SINE Alu 5 312 0 914 243 59 14 chr1 132566320 132566542 -110097811 - MIR SINE MIR -30 232 1 2272 83 3 10 chr1 132566563 132566877 -110097476 - AluSx SINE Alu 0 312 1 876 188 12 0 chr1 132567224 132567389 -110096964 + FAM SINE Alu 1 40 -9 1976 108 11 4 chr1 132567592 132567891 -110096462 - AluSx SINE Alu 0 301 1 2073 88 7 0 chr1 132568417 132568700 -110095653 + AluSp SINE Alu 25 309 -4 412 124 178 62 chr1 132568701 132568730 -110095623 - MER3 DNA MER1_type -14 148 124 1877 138 7 3 chr1 132568730 132569026 -110095327 + AluJb SINE Alu 1 297 -15 1741 146 0 18 chr1 132569034 132569315 -110095038 + AluJb SINE Alu 32 307 -5 412 124 178 62 chr1 132569315 132569405 -110094948 - MER3 DNA MER1_type -44 118 5 1068 108 13 0 chr1 132569472 132569629 -110094724 - AluSg/x SINE Alu -17 295 137 752 195 40 7 chr1 132570102 132570251 -110094102 - FRAM SINE Alu 0 176 23 1960 128 0 0 chr1 132570427 132570740 -110093613 + AluSx SINE Alu 2 314 0 1216 183 33 70 chr1 132571038 132571190 -110093163 + AluJo SINE Alu 1 138 -174 222 91 0 0 chr1 132571190 132571223 -110093130 + (CA)n Simple_repeat Simple_repeat 2 34 0 1216 183 33 70 chr1 132571223 132571370 -110092983 + AluJo SINE Alu 138 289 -23 231 310 0 0 chr1 132576064 132576122 -110088231 + G-rich Low_complexity Low_complexity 3 60 0 2024 112 3 10 chr1 132577763 132578058 -110086295 - AluSx SINE Alu -19 293 1 1455 138 30 0 chr1 132578310 132578542 -110085811 - AluSx SINE Alu -53 259 21 1622 162 28 0 chr1 132579350 132579634 -110084719 - AluSx SINE Alu 0 312 21 822 144 0 50 chr1 132579738 132579877 -110084476 + AluJo/FLAM SINE Alu 2 133 -169 2483 57 0 0 chr1 132579880 132580179 -110084174 + AluY SINE Alu 1 299 -12 2583 23 0 7 chr1 132580322 132580624 -110083729 + AluY SINE Alu 1 300 -11 282 276 214 7 chr1 132580638 132580783 -110083570 - MIR SINE MIR -65 197 23 187 283 0 0 chr1 132580870 132580916 -110083437 - L3 LINE CR1 -3 1574 1529 241 258 16 0 chr1 132580941 132581003 -110083350 - MIR SINE MIR -153 109 47 286 172 69 17 chr1 132581034 132581092 -110083261 - FRAM SINE Alu -37 129 69 1440 191 32 7 chr1 132581114 132581397 -110082956 - AluJo SINE Alu -18 294 5 2097 96 31 0 chr1 132581599 132581892 -110082461 + AluSp SINE Alu 1 302 -11 1966 125 0 3 chr1 132581992 132582279 -110082074 - AluSx SINE Alu -26 286 1 967 161 270 9 chr1 132582286 132582516 -110081837 - AluYa5 SINE Alu -21 290 1 2049 114 7 0 chr1 132582583 132582872 -110081481 - AluSx SINE Alu -19 293 3 2031 137 3 0 chr1 132583016 132583322 -110081031 - AluSx SINE Alu -4 308 2 2256 94 0 0 chr1 132583339 132583637 -110080716 - AluSx SINE Alu -14 298 1 186 372 199 23 chr1 132583742 132583991 -110080362 + L2 LINE L2 2067 2271 -1043 2313 66 17 0 chr1 132583991 132584293 -110080060 - AluSp SINE Alu -6 307 1 1625 180 0 34 chr1 132584293 132584616 -110079737 - AluJo SINE Alu 0 312 1 186 372 199 23 chr1 132584616 132584806 -110079547 + L2 LINE L2 2270 2585 -729 26 0 0 0 chr1 132584818 132584844 -110079509 + GC_rich Low_complexity Low_complexity 1 26 0 939 144 0 0 chr1 132585004 132585150 -110079203 + AluSg/x SINE Alu 159 304 -6 1703 129 25 88 chr1 132585177 132585494 -110078859 - AluJb SINE Alu -15 297 1 1341 128 0 5 chr1 132585713 132585917 -110078436 + AluJb SINE Alu 1 203 -109 216 0 0 0 chr1 132585928 132585952 -110078401 + (A)n Simple_repeat Simple_repeat 1 24 0 441 36 0 0 chr1 132585965 132586020 -110078333 + (CA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr1 132586624 132586653 -110077700 + AT_rich Low_complexity Low_complexity 1 29 0 1343 159 59 7 chr1 132586689 132586959 -110077394 - AluJo SINE Alu -23 289 6 2264 82 3 0 chr1 132586969 132587263 -110077090 - AluSp SINE Alu -18 295 1 321 258 0 0 chr1 132587365 132587431 -110076922 - MIR SINE MIR -65 143 78 2302 99 0 0 chr1 132587494 132587797 -110076556 + AluSx SINE Alu 3 305 -7 34 24 0 0 chr1 132587832 132587873 -110076480 + AT_rich Low_complexity Low_complexity 1 41 0 1792 146 0 30 chr1 132587877 132588178 -110076175 - AluJb SINE Alu -20 292 1 1874 148 0 7 chr1 132588183 132588488 -110075865 - AluJo SINE Alu -9 303 1 1638 164 3 26 chr1 132588589 132588894 -110075459 + AluJo SINE Alu 2 299 -13 1756 147 7 27 chr1 132589370 132589670 -110074683 - AluSx SINE Alu -18 294 1 2098 108 3 10 chr1 132589683 132589988 -110074365 - AluSx SINE Alu -9 303 1 553 119 0 0 chr1 132590106 132590190 -110074163 - AluJ/FRAM SINE Alu 0 312 229 1685 127 8 8 chr1 132590190 132590450 -110073903 - AluSx SINE Alu -52 260 1 1744 163 0 14 chr1 132590459 132590753 -110073600 - AluJo SINE Alu -22 290 1 2204 110 7 0 chr1 132590797 132591105 -110073248 - AluSx SINE Alu 0 312 3 905 139 20 7 chr1 132591163 132591314 -110073039 + AluSc SINE Alu 118 270 -39 323 268 87 16 chr1 132591327 132591428 -110072925 - L1ME1 LINE L1 -143 6023 5910 1854 116 4 4 chr1 132591428 132591705 -110072648 + AluSx SINE Alu 36 312 0 323 268 87 16 chr1 132591705 132591730 -110072623 - L1ME1 LINE L1 -256 5910 5888 704 215 51 68 chr1 132591784 132592095 -110072258 - HAL1 LINE L1 -296 2211 1906 2455 195 29 114 chr1 132592476 132592641 -110071712 - L1ME1 LINE L1 -5 6161 5983 1371 139 0 160 chr1 132592641 132592985 -110071368 - AluSx SINE Alu -13 289 1 2455 195 29 114 chr1 132592985 132593684 -110070669 - L1ME1 LINE L1 -183 5983 5371 618 131 0 0 chr1 132593731 132593815 -110070538 + AluS SINE Alu 2 85 -227 1957 58 0 4 chr1 132594154 132594414 -110069939 + AluY SINE Alu 1 259 -52 2320 76 0 0 chr1 132595158 132595459 -110068894 - AluY SINE Alu -10 301 1 331 254 15 0 chr1 132595461 132595528 -110068825 + MER2 DNA MER2_type 273 340 -5 1685 113 16 68 chr1 132595870 132596181 -110068172 - AluSx SINE Alu -17 295 1 680 263 34 42 chr1 132596280 132596542 -110067811 + MIR SINE MIR 1 260 -2 22 0 0 0 chr1 132598986 132599008 -110065345 + GC_rich Low_complexity Low_complexity 1 22 0 691 42 10 10 chr1 132602092 132602188 -110062165 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 678 209 0 0 chr1 132602188 132602303 -110062050 - FLAM_C SINE Alu -27 116 2 725 134 27 0 chr1 132602357 132602469 -110061884 + FRAM SINE Alu 26 140 -36 296 120 80 0 chr1 132602621 132602671 -110061682 - MLT2A1 LTR ERVL 0 453 400 204 194 65 0 chr1 132602674 132602736 -110061617 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 238 132 0 0 chr1 132602738 132602776 -110061577 - L1MB5 LINE L1 -192 5982 5945 3172 84 0 5 chr1 132602811 132603216 -110061137 - MLT2A1 LTR ERVL -41 403 1 2126 222 85 55 chr1 132603418 132604333 -110060020 + L1MC5 LINE L1 6284 7224 -737 846 129 0 23 chr1 132604334 132604466 -110059887 + FLAM_C SINE Alu 1 129 -14 476 191 186 59 chr1 132604466 132604558 -110059795 + L1MC5 LINE L1 7216 7295 -666 288 0 0 0 chr1 132604558 132604590 -110059763 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 476 191 186 59 chr1 132604590 132604701 -110059652 + L1MC5 LINE L1 7295 7445 -516 1786 136 63 0 chr1 132604712 132604998 -110059355 - AluSx SINE Alu -8 304 1 225 0 0 0 chr1 132605008 132605047 -110059306 + (TG)n Simple_repeat Simple_repeat 1 64 0 225 0 0 0 chr1 132605047 132605072 -110059281 + (TG)n Simple_repeat Simple_repeat 2 26 0 361 346 13 7 chr1 132605131 132605284 -110059069 - LTR65 LTR ERV1 0 669 516 591 270 31 0 chr1 132605391 132605550 -110058803 - MER90 LTR ERV1 -205 370 207 264 259 37 37 chr1 132605615 132605723 -110058630 + HAL1 LINE L1 1562 1669 -838 1908 150 3 0 chr1 132605731 132606025 -110058328 - AluSx SINE Alu -17 295 1 917 132 21 48 chr1 132606025 132606214 -110058139 - L1MC/D LINE L1 -749 5493 5310 530 217 0 9 chr1 132606226 132606341 -110058012 - L1MC/D LINE L1 -1286 4860 4747 2158 94 13 7 chr1 132606342 132606764 -110057589 - AluSx SINE Alu 0 424 1 225 214 14 0 chr1 132606772 132606842 -110057511 - L1MC/D LINE L1 -1446 4700 4630 2471 31 0 0 chr1 132606842 132607133 -110057220 - AluY SINE Alu -20 291 1 1677 152 7 7 chr1 132607166 132607443 -110056910 + AluSx SINE Alu 9 285 -27 228 67 0 0 chr1 132607446 132607476 -110056877 + (TAA)n Simple_repeat Simple_repeat 2 31 0 887 135 0 0 chr1 132607534 132607660 -110056693 + SVA Other Other 307 432 -954 3738 147 80 65 chr1 132607700 132607791 -110056562 - L1MB5 LINE L1 -9 6165 6077 2309 89 0 6 chr1 132607791 132608105 -110056248 + AluSx SINE Alu 1 312 0 3738 147 80 65 chr1 132608105 132608318 -110056035 - L1MB5 LINE L1 -97 6077 5869 2206 86 0 26 chr1 132608318 132608620 -110055733 - AluSc SINE Alu -14 295 2 3738 147 80 65 chr1 132608620 132609114 -110055239 - L1MB5 LINE L1 -305 5869 5349 2110 100 21 0 chr1 132609114 132609403 -110054950 - AluSx SINE Alu -15 297 3 3738 147 80 65 chr1 132609403 132609473 -110054880 - L1MB5 LINE L1 -825 5349 5282 1028 191 116 85 chr1 132609474 132609755 -110054598 - L1MDa LINE L1 -4617 1923 1652 2284 151 45 12 chr1 132609755 132610173 -110054180 - MSTB1 LTR MaLR 0 432 1 1028 191 116 85 chr1 132610173 132610333 -110054020 - L1MDa LINE L1 -4888 1652 1499 2150 75 27 7 chr1 132610333 132610628 -110053725 - AluSc SINE Alu -8 301 1 1028 191 116 85 chr1 132610628 132610713 -110053640 - L1MDa LINE L1 -5041 1499 1418 1741 153 37 10 chr1 132610713 132611007 -110053346 - AluSx SINE Alu -10 302 1 1028 191 116 85 chr1 132611007 132611054 -110053299 - L1MDa LINE L1 -5122 1418 1283 2368 228 40 17 chr1 132611055 132611582 -110052771 - L1MDa LINE L1 -5974 566 28 873 199 11 0 chr1 132611643 132611819 -110052534 - AluSc SINE Alu -15 294 117 2254 101 3 0 chr1 132611874 132612181 -110052172 + AluSx SINE Alu 1 308 -4 1191 166 174 20 chr1 132612771 132613024 -110051329 + AluJo SINE Alu 1 292 -10 757 187 0 15 chr1 132613390 132613524 -110050829 - AluJb SINE Alu -179 133 2 1985 98 4 0 chr1 132613636 132613910 -110050443 - AluSq SINE Alu -38 275 1 1034 67 0 15 chr1 132613912 132614046 -110050307 - AluSq/x SINE Alu -180 132 1 2329 69 10 0 chr1 132614055 132614361 -110049992 - AluSq SINE Alu -2 311 3 1132 194 57 14 chr1 132614945 132615224 -110049129 - AluJb SINE Alu -15 297 7 634 0 0 0 chr1 132615266 132615338 -110049015 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2066 84 7 7 chr1 132615554 132615851 -110048502 - AluSq SINE Alu -16 297 1 1034 247 37 19 chr1 132616121 132616445 -110047908 - L1MC4a LINE L1 -1849 5959 5630 641 14 0 0 chr1 132616635 132616707 -110047646 + tRNA-Gly-GGA tRNA tRNA 1 72 -3 669 0 0 0 chr1 132617618 132617690 -110046663 + tRNA-His-CAC tRNA tRNA 1 72 -3 1281 134 65 65 chr1 132617835 132617958 -110046395 + AluJb SINE Alu 1 123 -179 2486 53 0 0 chr1 132617958 132618261 -110046092 - AluSg SINE Alu -7 303 1 1281 134 65 65 chr1 132618261 132618428 -110045925 + AluJb SINE Alu 122 291 -11 674 0 0 0 chr1 132618976 132619050 -110045303 + tRNA-Lys-AAG tRNA tRNA 1 74 -2 1994 65 108 0 chr1 132619192 132619469 -110044884 + AluSp SINE Alu 1 307 -6 2392 65 0 3 chr1 132620145 132620454 -110043899 - AluSx SINE Alu -4 308 1 861 222 22 0 chr1 132620595 132620780 -110043573 + MER5A DNA MER1_type 1 189 0 259 309 22 51 chr1 132620812 132620990 -110043363 + L1M4 LINE L1 4510 4682 -1464 1501 195 3 7 chr1 132620994 132621292 -110043061 - AluJb SINE Alu -11 301 5 2242 76 7 0 chr1 132621333 132621636 -110042717 - AluY SINE Alu -5 306 2 1666 149 43 7 chr1 132621725 132622006 -110042347 - AluSg SINE Alu -19 291 1 24 32 0 0 chr1 132622006 132622037 -110042316 + AT_rich Low_complexity Low_complexity 1 31 0 2378 66 7 0 chr1 132622048 132622352 -110042001 + AluSp SINE Alu 1 306 -7 418 161 49 12 chr1 132622362 132622443 -110041910 + MLT1A2 LTR MaLR 71 154 -395 238 200 33 0 chr1 132622462 132622522 -110041831 + MLT1G LTR MaLR 517 578 -12 293 281 8 58 chr1 132622668 132622789 -110041564 + HAL1 LINE L1 1400 1514 -993 393 225 36 45 chr1 132622789 132622900 -110041453 - MER90 LTR ERV1 0 614 505 287 289 10 10 chr1 132622895 132622992 -110041361 - MER90 LTR ERV1 -228 386 290 * 1093 124 34 0 chr1 132622992 132623169 -110041184 + AluSg/x SINE Alu 122 304 -6 2318 80 3 0 chr1 132623172 132623473 -110040880 + AluSg SINE Alu 1 302 -8 804 210 105 25 chr1 132623475 132623713 -110040640 - MER90 LTR ERV1 -318 257 1 2360 82 0 0 chr1 132623735 132624038 -110040315 + AluSg SINE Alu 1 303 -7 623 107 0 0 chr1 132624066 132624150 -110040203 + AluSx SINE Alu 2 85 -228 1602 252 9 48 chr1 132624150 132624611 -110039742 - LTR2 LTR ERV1 0 449 7 1640 82 0 22 chr1 132624612 132624843 -110039510 + AluSx SINE Alu 79 304 -8 1269 235 47 67 chr1 132624843 132625205 -110039148 + HAL1 LINE L1 1542 1891 -616 2237 96 3 3 chr1 132625205 132625518 -110038835 - AluSq SINE Alu 0 313 1 1269 235 47 67 chr1 132625518 132625708 -110038645 + HAL1 LINE L1 1891 2083 -424 815 219 44 0 chr1 132625708 132625868 -110038485 + MLT1A2 LTR MaLR 208 374 0 439 186 0 0 chr1 132625983 132626053 -110038300 - MER31A LTR ERV1 -63 422 353 379 342 13 40 chr1 132626664 132626792 -110037561 + L1MC4a LINE L1 5538 5668 -2140 2235 75 3 0 chr1 132626792 132627087 -110037266 + AluY SINE Alu 15 310 -1 379 342 13 40 chr1 132627087 132627259 -110037094 + L1MC4a LINE L1 5668 5830 -1978 262 272 76 109 chr1 132627295 132627363 -110036990 - MIR SINE MIR -1 261 192 4214 93 18 7 chr1 132627363 132627966 -110036387 + MER4B LTR ERV1 1 610 0 262 272 76 109 chr1 132627966 132627997 -110036356 - MIR SINE MIR -70 192 162 1980 130 7 0 chr1 132627997 132628305 -110036048 - AluSx SINE Alu 0 312 3 262 272 76 109 chr1 132628305 132628388 -110035965 - MIR SINE MIR -100 162 84 524 92 0 26 chr1 132628749 132628825 -110035528 - tRNA-Asn-AAC tRNA tRNA -3 74 1 249 289 62 0 chr1 132629287 132629384 -110034969 + L2 LINE L2 3211 3313 0 666 197 149 90 chr1 132629649 132630039 -110034314 + ERVL-F LTR ERVL 5310 5722 -42 236 200 17 0 chr1 132630041 132630101 -110034252 + GA-rich Low_complexity Low_complexity 2 62 0 402 303 171 11 chr1 132630134 132630309 -110034044 + MLT2F LTR ERVL 1 203 -460 469 116 12 70 chr1 132630554 132630640 -110033713 + MER30 DNA MER1_type 1 81 -149 1250 100 3 153 chr1 132630701 132630821 -110033532 + AluSx SINE Alu 1 51 -261 2247 81 0 26 chr1 132630821 132631131 -110033222 - AluSg SINE Alu -8 302 1 1250 100 3 153 chr1 132631131 132631310 -110033043 + AluSx SINE Alu 51 255 -57 240 272 32 88 chr1 132631391 132631516 -110032837 - AluSq/x SINE Alu -181 122 5 1276 92 0 0 chr1 132631634 132631798 -110032555 - U1 snRNA snRNA -1 164 1 250 293 52 26 chr1 132632195 132632311 -110032042 - Charlie4 DNA MER1_type -4 1957 1839 2334 54 6 13 chr1 132632580 132632893 -110031460 - AluY SINE Alu 0 311 1 818 200 12 0 chr1 132632979 132633144 -110031209 - AluJb SINE Alu -6 306 140 287 227 13 13 chr1 132633162 132633237 -110031116 + MER4B-int LTR ERV1 5766 5840 -918 2877 196 29 35 chr1 132633272 132633891 -110030462 - L1P LINE L1 -5521 625 11 497 132 13 0 chr1 132633908 132633984 -110030369 - AluJb SINE Alu -179 133 57 2068 164 44 3 chr1 132633985 132634351 -110030002 + LOR1b LTR ERV1 79 459 -2 497 125 0 0 chr1 132635144 132635216 -110029137 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 271 0 29 chr1 132636127 132636197 -110028156 + GA-rich Low_complexity Low_complexity 2 69 0 267 256 218 0 chr1 132637437 132637648 -110026705 + HAL1 LINE L1 2105 2361 -146 289 359 63 11 chr1 132637940 132638227 -110026126 + L1ME LINE L1 5490 5791 -330 322 219 143 25 chr1 132638310 132638429 -110025924 - MIR SINE MIR -26 236 104 211 202 0 56 chr1 132639357 132639446 -110024907 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 * 219 206 15 15 chr1 132639394 132639462 -110024891 + (TA)n Simple_repeat Simple_repeat 1 68 0 2253 66 0 30 chr1 132639474 132639775 -110024578 - AluY SINE Alu -19 292 1 1188 214 11 4 chr1 132639934 132640209 -110024144 + AluJo SINE Alu 27 303 -9 1057 256 111 39 chr1 132640285 132640699 -110023654 - L1 LINE L1 -1443 4703 4260 290 143 16 0 chr1 132640699 132640762 -110023591 + (TG)n Simple_repeat Simple_repeat 2 65 0 256 235 0 0 chr1 132640780 132640831 -110023522 - L1 LINE L1 -1901 4245 4195 * 382 280 158 34 chr1 132640828 132641588 -110022765 - L1MEc LINE L1 -4732 1492 793 1555 135 0 27 chr1 132641588 132641847 -110022506 - AluSq SINE Alu -4 309 58 382 280 158 34 chr1 132641847 132641893 -110022460 - L1MEc LINE L1 -5431 793 754 913 253 37 47 chr1 132642155 132642558 -110021795 + L1M4 LINE L1 4859 5257 -889 607 286 21 10 chr1 132642558 132642750 -110021603 + MLT2D LTR ERVL 1 194 -220 254 188 72 0 chr1 132642775 132642844 -110021509 + MLT2D LTR ERVL 371 444 -76 309 82 0 0 chr1 132644085 132644134 -110020219 + (CA)n Simple_repeat Simple_repeat 1 49 0 558 310 50 46 chr1 132644493 132644932 -110019421 + L1MC4 LINE L1 7189 7629 -413 243 347 11 34 chr1 132644943 132645119 -110019234 - L1MC4 LINE L1 -411 7631 7460 291 85 0 0 chr1 132646279 132646326 -110018027 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 245 175 38 12 chr1 132646732 132646812 -110017541 + CT-rich Low_complexity Low_complexity 2 83 0 230 143 20 0 chr1 132647884 132647933 -110016420 + GA-rich Low_complexity Low_complexity 1 50 0 267 54 0 0 chr1 132649426 132649445 -110014908 + (CA)n Simple_repeat Simple_repeat 1 56 0 267 54 0 0 chr1 132649445 132649482 -110014871 + (CA)n Simple_repeat Simple_repeat 2 38 0 200 167 21 0 chr1 132650999 132651047 -110013306 + GA-rich Low_complexity Low_complexity 1 49 0 243 0 0 0 chr1 132652552 132652579 -110011774 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 15560 125 12 17 chr1 132654308 132655284 -110009069 + L1P LINE L1 875 1854 -4292 5508 41 9 0 chr1 132655284 132655938 -110008415 - L1PA4 LINE L1 -2 6153 5494 15560 125 12 17 chr1 132655938 132657325 -110007028 + L1P LINE L1 1854 3226 -2920 1534 165 0 0 chr1 132658043 132658285 -110006068 + AluSx SINE Alu 38 279 -33 404 242 0 0 chr1 132659243 132659338 -110005015 + L1MB5 LINE L1 6071 6165 -9 502 265 7 14 chr1 132660281 132660428 -110003925 - MIR SINE MIR -21 241 96 218 109 43 0 chr1 132660578 132660624 -110003729 + T-rich Low_complexity Low_complexity 1 48 0 1811 128 0 0 chr1 132660626 132660899 -110003454 - AluSg SINE Alu -37 273 1 1840 138 6 6 chr1 132661981 132662293 -110002060 - AluSx SINE Alu 0 312 1 2337 67 0 32 chr1 132662303 132662619 -110001734 - AluY SINE Alu -5 306 1 971 211 5 5 chr1 132662702 132662906 -110001447 - AluJb SINE Alu -108 204 1 348 200 42 42 chr1 132665540 132665635 -109998718 + L1MB5 LINE L1 6071 6165 -9 466 279 7 14 chr1 132666638 132666785 -109997568 - MIR SINE MIR -21 241 96 21 36 0 0 chr1 132666932 132666960 -109997393 + AT_rich Low_complexity Low_complexity 1 28 0 1598 172 10 0 chr1 132666962 132667258 -109997095 - AluSg SINE Alu -11 299 1 220 358 73 0 chr1 132669793 132669916 -109994437 - MIR SINE MIR -13 249 118 181 315 65 56 chr1 132671091 132671199 -109993154 + L2 LINE L2 10 118 -3196 252 318 91 8 chr1 132671263 132671395 -109992958 - MER5A DNA MER1_type -28 161 19 323 253 44 0 chr1 132671432 132671521 -109992832 - MIR SINE MIR -67 141 47 1911 154 10 0 chr1 132671718 132672023 -109992330 - AluJo SINE Alu -4 308 1 21 0 0 0 chr1 132672032 132672053 -109992300 + AT_rich Low_complexity Low_complexity 1 21 0 319 221 52 0 chr1 132672105 132672182 -109992171 - L1MB7 LINE L1 -9 6175 6095 472 204 18 18 chr1 132872186 132872299 -109792054 + L1MEc LINE L1 1845 1957 -4439 246 100 0 50 chr1 132872407 132872467 -109791886 + L1MEc LINE L1 2082 2138 -4258 243 286 55 0 chr1 132872507 132872598 -109791755 + L1MC/D LINE L1 5642 5737 -2071 695 97 0 0 chr1 132873221 132873314 -109791039 + AluJb SINE Alu 205 297 -15 579 105 0 0 chr1 132873906 132873982 -109790371 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 348 24 0 0 chr1 132873991 132874032 -109790321 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1917 100 4 7 chr1 132874042 132874323 -109790030 - AluSc SINE Alu -29 280 1 820 168 44 7 chr1 132874452 132874589 -109789764 - AluJo SINE Alu -169 143 2 1321 190 62 55 chr1 132874738 132875028 -109789325 - AluJo SINE Alu -10 292 1 530 146 0 0 chr1 132875059 132875141 -109789212 - AluSg1 SINE Alu -2 308 227 935 119 126 0 chr1 132875141 132875284 -109789069 - AluSg1 SINE Alu -148 161 1 827 220 0 6 chr1 132875424 132875583 -109788770 - FRAM SINE Alu -19 157 1 265 194 45 30 chr1 132875622 132875756 -109788597 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 937 130 0 0 chr1 132875761 132875884 -109788469 - FLAM_C SINE Alu -10 123 1 1690 186 3 3 chr1 132875905 132876196 -109788157 - AluJb SINE Alu -21 291 1 2143 126 0 0 chr1 132877322 132877616 -109786737 - AluSx SINE Alu -18 294 1 1509 180 3 51 chr1 132878091 132878402 -109785951 + AluJo SINE Alu 1 296 -16 632 223 0 0 chr1 132878440 132878561 -109785792 + AluJo SINE Alu 2 122 -180 474 222 30 0 chr1 132878572 132878671 -109785682 + AluJo SINE Alu 180 281 -31 2042 119 13 13 chr1 132878789 132879100 -109785253 + AluSx SINE Alu 1 311 -1 433 177 0 52 chr1 132879100 132879196 -109785157 + LTR56 LTR ERV1 16 106 -339 731 142 100 0 chr1 132879349 132879469 -109784884 - AluSq/x SINE Alu -179 133 2 1351 225 24 15 chr1 132879473 132879835 -109784518 + LTR56 LTR ERV1 97 435 -2 3548 161 42 32 chr1 132879910 132880007 -109784346 - LTR51 LTR ERV1 0 671 577 234 0 0 0 chr1 132880007 132880033 -109784320 + (GA)n Simple_repeat Simple_repeat 2 27 0 3548 161 42 32 chr1 132880033 132880599 -109783754 - LTR51 LTR ERV1 -94 577 1 2041 121 0 0 chr1 132882212 132882523 -109781830 + AluSg SINE Alu 1 311 0 1257 169 4 36 chr1 132882913 132883162 -109781191 - AluJo SINE Alu -28 284 44 2318 104 10 0 chr1 132883491 132883798 -109780555 + AluSx SINE Alu 1 310 -2 262 341 102 31 chr1 132884198 132884550 -109779803 + MER110-int LTR ERV1 2177 2553 -2094 901 232 0 0 chr1 132884809 132884960 -109779393 - FRAM SINE Alu -11 155 5 180 111 0 0 chr1 132885359 132885386 -109778967 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2349 97 0 0 chr1 132885770 132886069 -109778284 - AluSx SINE Alu -13 299 1 1962 129 0 0 chr1 132886748 132887027 -109777326 + AluSx SINE Alu 24 302 -10 224 268 0 0 chr1 132887116 132887157 -109777196 - L2 LINE L2 -92 3180 3140 212 313 0 12 chr1 132887246 132887329 -109777024 - L2 LINE L2 -83 3230 3149 180 246 58 29 chr1 132887470 132887539 -109776814 + MIR SINE MIR 178 248 -14 1025 235 131 47 chr1 132887719 132888443 -109775910 + L1MCa LINE L1 1489 2542 -4065 1242 326 63 66 chr1 132888498 132889222 -109775131 + L1MCa LINE L1 2625 3346 -3080 316 293 93 22 chr1 132889385 132889709 -109774644 - L1M4 LINE L1 -1583 4563 4217 305 253 84 48 chr1 132890330 132890496 -109773857 + MER104 DNA Tc2 5 176 -4 208 377 39 15 chr1 132891184 132891314 -109773039 + L2 LINE L2 2232 2364 -950 1657 129 19 0 chr1 132891575 132891831 -109772522 - L1MC2 LINE L1 -365 5979 5719 2177 133 3 0 chr1 132891836 132892193 -109772160 - AluSx SINE Alu 0 358 1 569 186 0 0 chr1 132892442 132892544 -109771809 - AluJb SINE Alu -3 309 208 1328 104 6 6 chr1 132893022 132893204 -109771149 - AluSp SINE Alu -14 299 118 209 304 29 0 chr1 132893672 132893741 -109770612 - MER5B DNA MER1_type -10 168 98 1942 95 0 11 chr1 132893810 132894074 -109770279 + AluSx SINE Alu 1 261 -51 21 0 0 0 chr1 132894677 132894698 -109769655 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 132895021 132895046 -109769307 + AT_rich Low_complexity Low_complexity 1 25 0 622 277 135 48 chr1 132895115 132895552 -109768801 + L1ME4a LINE L1 5399 5873 -248 1343 296 88 50 chr1 132895565 132896622 -109767731 + L1MCa LINE L1 299 1395 -5021 398 296 35 47 chr1 132896724 132896981 -109767372 + L1MCa LINE L1 3727 3980 -2446 334 275 25 0 chr1 132897504 132897584 -109766769 + MER81 DNA DNA 1 82 -32 340 36 0 54 chr1 132898172 132898228 -109766125 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 425 18 0 18 chr1 132898383 132898438 -109765915 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1005 177 11 0 chr1 132898440 132898615 -109765738 - FRAM SINE Alu -2 174 1 490 227 151 8 chr1 132898651 132898770 -109765583 + MER5B DNA MER1_type 2 137 -41 2518 113 22 19 chr1 132898851 132899214 -109765139 - THE1B LTR MaLR 0 364 1 395 208 118 62 chr1 132899342 132899486 -109764867 + MER5B DNA MER1_type 22 173 -5 676 179 31 107 chr1 132899996 132900192 -109764161 - MIR SINE MIR -75 187 7 288 186 77 0 chr1 132901500 132901563 -109762790 - MIR SINE MIR -108 100 34 194 339 94 36 chr1 132902514 132902706 -109761647 + L2 LINE L2 2466 2668 -646 1024 79 57 0 chr1 132902737 132902877 -109761476 - AluSg/x SINE Alu -11 301 154 185 355 65 32 chr1 132903058 132903213 -109761140 + L2 LINE L2 2812 2971 -301 1269 223 129 34 chr1 132903251 132903668 -109760685 + MSTB2 LTR MaLR 1 457 0 7736 170 36 11 chr1 132903675 132906244 -109758109 + L1PA15 LINE L1 1420 6585 -231 180 273 78 39 chr1 132906469 132906546 -109757807 - L2 LINE L2 -1538 1776 1697 425 281 100 0 chr1 132907464 132907624 -109756729 - MIR3 SINE MIR -3 205 30 1432 123 0 15 chr1 132907666 132907870 -109756483 - AluSg/x SINE Alu -26 284 84 189 338 59 0 chr1 132907902 132907970 -109756383 - L2 LINE L2 -50 3222 3151 2539 56 3 3 chr1 132908144 132908450 -109755903 + AluY SINE Alu 1 306 -5 263 336 59 38 chr1 132908941 132909230 -109755123 - HAL1 LINE L1 -836 1671 1377 22 0 0 0 chr1 132909432 132909454 -109754899 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr1 132909467 132909491 -109754862 + (TC)n Simple_repeat Simple_repeat 1 24 0 7318 62 10 2 chr1 132909594 132910853 -109753500 - L1PA6 LINE L1 -3 6151 4890 1433 208 13 0 chr1 132911189 132911425 -109752928 - MER8 DNA MER2_type 0 239 1 273 253 11 0 chr1 132911452 132911539 -109752814 - L1MC4 LINE L1 -1339 6703 6616 261 244 33 11 chr1 132911466 132911556 -109752797 + L1MC4 LINE L1 6614 6705 -1337 * 2114 121 74 27 chr1 132912141 132912386 -109751967 - MER51D LTR ERV1 -232 425 152 2079 130 0 3 chr1 132912386 132912685 -109751668 - AluSx SINE Alu -14 298 1 2114 121 74 27 chr1 132912685 132912845 -109751508 - MER51D LTR ERV1 -505 152 1 852 184 19 6 chr1 132912845 132913003 -109751350 - MER72 LTR ERV1 -562 160 1 981 123 20 0 chr1 132913018 132913164 -109751189 - LTR49 LTR ERV1 -443 152 4 * 1137 176 39 5 chr1 132913164 132913366 -109750987 + MER89 LTR ERV1 349 557 -2 749 181 85 75 chr1 132913384 132913702 -109750651 + MER31B LTR ERV1 1 445 -21 600 196 40 54 chr1 132913715 132913863 -109750490 + LTR8 LTR ERV1 1 146 -545 1802 147 46 12 chr1 132913866 132914192 -109750161 + MER1B DNA MER1_type 1 337 -2 2870 145 49 45 chr1 132914203 132914774 -109749579 + LTR8A LTR ERV1 155 727 0 363 291 95 29 chr1 132914790 132915031 -109749322 - HAL1 LINE L1 -1811 696 440 1471 128 51 12 chr1 132915064 132915321 -109749032 - MER41E LTR ERV1 0 512 246 1801 98 0 0 chr1 132915434 132915670 -109748683 + AluSg/x SINE Alu 65 300 -10 2298 77 13 0 chr1 132915790 132916089 -109748264 + AluSc SINE Alu 2 304 -5 2419 67 0 16 chr1 132916424 132916740 -109747613 + AluY SINE Alu 1 311 0 1905 114 89 0 chr1 132917098 132917369 -109746984 + AluSx SINE Alu 1 295 -17 359 195 13 13 chr1 132917404 132917481 -109746872 - MER4B-int LTR ERV1 -916 5842 5766 800 204 18 0 chr1 132917499 132917666 -109746687 + AluJb SINE Alu 140 309 -3 2217 99 0 0 chr1 132918043 132918327 -109746026 + AluSg SINE Alu 1 284 -26 6345 115 40 10 chr1 132918390 132919330 -109745023 - LTR5 LTR ERVK 0 969 1 2135 121 0 34 chr1 132919523 132919845 -109744508 + AluSx SINE Alu 1 311 -1 602 168 20 0 chr1 132919864 132919965 -109744388 - FRAM SINE Alu -34 142 40 673 160 0 0 chr1 132919970 132920076 -109744277 - FLAM_A SINE Alu -19 123 18 1416 156 96 63 chr1 132920126 132920462 -109743891 - AluJb SINE Alu 0 346 1 486 33 0 0 chr1 132921547 132921607 -109742746 + (GA)n Simple_repeat Simple_repeat 1 60 0 1758 109 0 42 chr1 132921799 132922064 -109742289 - AluSx SINE Alu 0 312 59 3999 72 2 52 chr1 132922278 132922907 -109741446 + L1PA5 LINE L1 5553 6149 -5 819 163 118 26 chr1 132922979 132923132 -109741221 - FAM SINE Alu -8 167 1 9486 126 26 19 chr1 132923456 132924940 -109739413 - Tigger2 DNA MER2_type -2 2716 1223 1580 104 0 0 chr1 132924946 132925147 -109739206 - AluSq SINE Alu -112 201 1 207 175 48 48 chr1 132925151 132925214 -109739139 + L2 LINE L2 2388 2450 -864 1783 183 146 12 chr1 132925322 132925550 -109738803 + LOR1a LTR ERV1 1 197 -300 2559 48 0 10 chr1 132925550 132925862 -109738491 - AluY SINE Alu -2 309 1 1783 183 146 12 chr1 132925862 132926044 -109738309 + LOR1a LTR ERV1 197 466 -31 2076 104 0 0 chr1 132926546 132926863 -109737490 + AluSg SINE Alu 1 317 0 269 135 19 0 chr1 132927370 132927422 -109736931 + (TA)n Simple_repeat Simple_repeat 2 54 0 411 21 0 0 chr1 132927422 132927470 -109736883 + (CA)n Simple_repeat Simple_repeat 2 49 0 648 142 9 0 chr1 132927470 132927576 -109736777 - FLAM_C SINE Alu -34 109 3 23 33 0 0 chr1 132927579 132927609 -109736744 + AT_rich Low_complexity Low_complexity 1 30 0 628 283 46 5 chr1 132927718 132927937 -109736416 + L1MEc LINE L1 1566 1793 -4603 514 194 57 0 chr1 132927959 132928147 -109736206 + L1MEc LINE L1 1895 2133 -4263 2248 99 0 19 chr1 132928169 132928481 -109735872 + AluSx SINE Alu 2 307 -5 254 265 59 10 chr1 132928504 132928606 -109735747 + L1ME LINE L1 5614 5720 -450 1846 81 4 12 chr1 132929462 132929709 -109734644 - AluY SINE Alu -66 245 1 632 173 68 49 chr1 132929995 132930157 -109734196 - U1 snRNA snRNA 0 165 1 409 279 29 7 chr1 132930559 132930699 -109733654 - Charlie4 DNA MER1_type -4 1957 1815 472 179 0 0 chr1 132931242 132931320 -109733033 - LTR8 LTR ERV1 0 691 614 2785 147 7 80 chr1 132931332 132931885 -109732468 - LTR8 LTR ERV1 -178 513 1 272 258 133 0 chr1 132931900 132932028 -109732325 - L1ME LINE L1 -273 5891 5747 290 244 49 0 chr1 132932029 132932111 -109732242 - LTR23 LTR ERV1 0 437 352 1531 65 51 19 chr1 132932166 132932405 -109731948 - AluY SINE Alu 0 311 72 570 278 22 22 chr1 132932547 132932727 -109731626 + LTR67 LTR ERVL 356 535 -22 2299 118 0 6 chr1 132932904 132933218 -109731135 + AluSx SINE Alu 1 312 0 1342 152 0 14 chr1 132933824 132934035 -109730318 + AluJo SINE Alu 86 293 -19 227 169 70 84 chr1 132934702 132934773 -109729580 + MER103 DNA DNA 94 163 -3 2355 181 3 3 chr1 132935041 132935406 -109728947 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr1 132936114 132936138 -109728215 + AT_rich Low_complexity Low_complexity 1 24 0 1909 187 32 9 chr1 132936588 132936936 -109727417 - MLT1A1 LTR MaLR 0 365 10 333 321 119 18 chr1 132937252 132937470 -109726883 - MIR SINE MIR 0 262 23 7958 41 3 1 chr1 132938029 132939327 -109725026 + L1P2 LINE L1 4409 5709 -445 280 229 29 0 chr1 132939439 132939544 -109724809 + L1MC4 LINE L1 2011 6983 -1339 253 178 0 0 chr1 132939535 132939580 -109724773 - L1MC4 LINE L1 -1339 6703 6659 * 1641 137 0 0 chr1 132939834 132940067 -109724286 - AluSx SINE Alu -79 233 1 1857 182 68 44 chr1 132940881 132941216 -109723137 - LOR1b LTR ERV1 -23 438 89 2634 52 0 0 chr1 132941216 132941524 -109722829 - AluY SINE Alu -3 308 1 1857 182 68 44 chr1 132941524 132941616 -109722737 - LOR1b LTR ERV1 -372 89 1 300 287 120 7 chr1 132941670 132941820 -109722533 - L2 LINE L2 -797 2517 2351 273 258 119 40 chr1 132942254 132942405 -109721948 - REP3 LTR ERV -399 163 1 684 165 0 9 chr1 132942548 132942657 -109721696 + AluJb SINE Alu 1 108 -204 229 26 53 0 chr1 132942672 132942710 -109721643 + (CAA)n Simple_repeat Simple_repeat 2 41 0 366 200 0 0 chr1 132942812 132942877 -109721476 - AluS SINE Alu -243 65 1 28 20 0 40 chr1 132944000 132944031 -109720322 + AT_rich Low_complexity Low_complexity 1 31 -17 1863 165 0 7 chr1 132944031 132944322 -109720031 - AluJo SINE Alu -23 289 1 28 20 0 40 chr1 132944322 132944340 -109720013 + AT_rich Low_complexity Low_complexity 31 48 0 414 248 116 16 chr1 132944736 132944857 -109719496 + L2 LINE L2 3175 3307 -6 536 271 8 8 chr1 132944990 132945112 -109719241 - L2 LINE L2 -4 3309 3188 618 262 90 33 chr1 132945839 132946083 -109718270 - MIR SINE MIR 0 262 5 189 0 0 0 chr1 132948232 132948253 -109716100 + (A)n Simple_repeat Simple_repeat 1 21 0 567 14 0 14 chr1 132948654 132948723 -109715630 + L1PA3 LINE L1 6084 6151 -4 9099 172 46 38 chr1 132948817 132949668 -109714685 - LOR1b-int LTR ERV1 0 5853 5010 1926 105 3 20 chr1 132949668 132949962 -109714391 - AluSg SINE Alu -12 298 10 9099 172 46 38 chr1 132949962 132951307 -109713046 - LOR1b-int LTR ERV1 -843 5010 3077 196 337 11 11 chr1 133001418 133001507 -109662846 - L2 LINE L2 -208 3064 2976 559 275 80 9 chr1 133001519 133001764 -109662589 + L1ME3A LINE L1 5691 5949 -217 211 300 102 65 chr1 133002007 133002360 -109661993 - L2 LINE L2 -461 2853 2488 253 319 44 0 chr1 133002987 133003078 -109661275 + MARNA DNA Mariner 94 188 -398 2363 95 3 3 chr1 133003311 133003615 -109660738 + AluSq SINE Alu 1 304 -9 584 199 56 43 chr1 133004323 133004484 -109659869 - MIR SINE MIR -50 212 50 394 298 50 31 chr1 133004665 133004826 -109659527 - L2 LINE L2 0 3272 3109 221 330 28 57 chr1 133004936 133005042 -109659311 + L2 LINE L2 3150 3252 -20 2071 118 66 39 chr1 133005235 133005599 -109658754 + THE1C LTR MaLR 2 375 0 1833 170 7 0 chr1 133005667 133005961 -109658392 + AluJo SINE Alu 5 300 -12 1966 162 0 10 chr1 133006563 133006866 -109657487 + AluJb SINE Alu 1 300 -12 205 269 15 15 chr1 133007828 133007895 -109656458 + GA-rich Low_complexity Low_complexity 1 67 0 537 264 101 17 chr1 133008210 133008388 -109655965 - MIR SINE MIR -30 232 40 2353 104 0 0 chr1 133008936 133009235 -109655118 - AluSx SINE Alu -13 299 1 197 280 67 63 chr1 133009751 133009990 -109654363 + L2 LINE L2 1427 1666 -1648 392 0 21 0 chr1 133010007 133010055 -109654298 + (CA)n Simple_repeat Simple_repeat 2 50 0 302 345 128 34 chr1 133010166 133010401 -109653952 - L2 LINE L2 -17 3255 2999 931 210 44 6 chr1 133010567 133010748 -109653605 - MER5A DNA MER1_type -1 188 1 376 323 30 15 chr1 133010755 133010888 -109653465 + L2 LINE L2 1846 1980 -1334 381 341 78 27 chr1 133010902 133011233 -109653120 + L2 LINE L2 2625 2972 -342 2505 142 35 35 chr1 133011298 133011646 -109652707 + MSTB LTR MaLR 3 353 -73 1798 180 0 0 chr1 133011646 133011952 -109652401 - AluSx SINE Alu -6 306 1 2505 142 35 35 chr1 133011952 133012026 -109652327 + MSTB LTR MaLR 352 425 -1 590 290 95 30 chr1 133012987 133013218 -109651135 - MIR SINE MIR -12 250 5 214 344 0 0 chr1 133013243 133013304 -109651049 - MIR SINE MIR -115 93 33 2302 84 0 0 chr1 133014104 133014412 -109649941 - AluY SINE Alu 0 308 1 231 208 0 19 chr1 133014957 133015010 -109649343 + MIR SINE MIR 192 243 -19 585 198 80 104 chr1 133015144 133015244 -109649109 - MER106B DNA MER1_type 0 1059 958 3231 159 11 25 chr1 133015244 133015771 -109648582 + MLT2B1 LTR ERVL 1 520 0 585 198 80 104 chr1 133015771 133015882 -109648471 - MER106B DNA MER1_type -101 958 30 183 100 0 0 chr1 133016532 133016562 -109647791 + (CCTAA)n Simple_repeat Simple_repeat 1 30 0 195 237 26 0 chr1 133016902 133016940 -109647413 - L2 LINE L2 -13 3259 3221 357 309 111 84 chr1 133017388 133017670 -109646683 - L2 LINE L2 0 3272 2999 1367 220 215 21 chr1 133017670 133018093 -109646260 + MLT1D LTR MaLR 1 505 0 357 309 111 84 chr1 133018093 133018665 -109645688 - L2 LINE L2 -273 2999 2392 289 267 12 0 chr1 133018837 133018923 -109645430 - L2 LINE L2 0 3313 3227 238 174 58 70 chr1 133019101 133019187 -109645166 - L1M4b LINE L1 -5461 1398 1314 2175 146 125 13 chr1 133019603 133019988 -109644365 + MSTA LTR MaLR 1 428 0 503 152 9 0 chr1 133020183 133020200 -109644153 + (TA)n Simple_repeat Simple_repeat 2 17 -97 2492 132 28 0 chr1 133020200 133020555 -109643798 - MER47A DNA MER2_type -1 365 1 503 152 9 0 chr1 133020555 133020566 -109643787 + (TA)n Simple_repeat Simple_repeat 17 26 -88 1564 199 101 9 chr1 133020566 133020883 -109643470 - MER7A DNA MER2_type -1 345 2 503 152 9 0 chr1 133020883 133020965 -109643388 + (TA)n Simple_repeat Simple_repeat 26 114 0 286 336 89 31 chr1 133021536 133021828 -109642525 - L2 LINE L2 -1402 1912 1604 2140 109 3 20 chr1 133021939 133022233 -109642120 + AluSx SINE Alu 1 298 -14 414 0 0 0 chr1 133022233 133022279 -109642074 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 195 42 0 0 chr1 133022279 133022303 -109642050 + (GA)n Simple_repeat Simple_repeat 2 25 0 2626 55 3 0 chr1 133024811 133025121 -109639232 - AluY SINE Alu 0 311 1 205 226 0 19 chr1 133025667 133025720 -109638633 + MIR SINE MIR 192 243 -19 575 198 80 104 chr1 133025854 133025954 -109638399 - MER106B DNA MER1_type 0 1059 958 3025 159 11 25 chr1 133025954 133026481 -109637872 + MLT2B1 LTR ERVL 1 520 0 575 198 80 104 chr1 133026481 133026592 -109637761 - MER106B DNA MER1_type -101 958 30 293 125 18 0 chr1 133027739 133027795 -109636558 + GA-rich Low_complexity Low_complexity 1 57 0 305 125 18 0 chr1 133029627 133029683 -109634670 + GA-rich Low_complexity Low_complexity 1 57 0 333 0 0 0 chr1 133031200 133031237 -109633116 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 125 18 0 chr1 133032738 133032794 -109631559 + GA-rich Low_complexity Low_complexity 1 57 0 414 53 0 0 chr1 133034299 133034356 -109629997 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 266 163 38 12 chr1 133034762 133034842 -109629511 + CT-rich Low_complexity Low_complexity 2 83 0 279 0 0 0 chr1 133035908 133035934 -109628419 + (CA)n Simple_repeat Simple_repeat 1 57 0 279 0 0 0 chr1 133035934 133035965 -109628388 + (CA)n Simple_repeat Simple_repeat 2 32 0 221 146 21 0 chr1 133037480 133037528 -109626825 + GA-rich Low_complexity Low_complexity 1 49 0 243 0 0 0 chr1 133039035 133039062 -109625291 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 266 163 38 12 chr1 133039468 133039548 -109624805 + CT-rich Low_complexity Low_complexity 2 83 0 423 0 0 0 chr1 133040640 133040687 -109623666 + (CA)n Simple_repeat Simple_repeat 2 48 0 293 125 18 0 chr1 133042198 133042254 -109622099 + GA-rich Low_complexity Low_complexity 1 57 0 351 0 0 0 chr1 133043757 133043796 -109620557 + (CA)n Simple_repeat Simple_repeat 2 40 0 16516 78 5 45 chr1 133046010 133047072 -109617281 + L1P LINE L1 875 1978 -4168 5503 41 9 0 chr1 133047072 133047724 -109616629 - L1PA4 LINE L1 -4 6151 5494 16516 78 5 45 chr1 133047724 133049111 -109615242 + L1P LINE L1 1978 3226 -2920 1785 158 0 0 chr1 133049829 133050094 -109614259 + AluSx SINE Alu 38 302 -10 401 242 0 0 chr1 133053193 133053288 -109611065 + L1MB5 LINE L1 6071 6165 -9 440 265 7 14 chr1 133054231 133054378 -109609975 - MIR SINE MIR -21 241 96 218 93 0 23 chr1 133054531 133054574 -109609779 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1925 128 0 0 chr1 133054576 133054849 -109609504 - AluSg SINE Alu -37 273 1 1956 138 6 6 chr1 133055931 133056243 -109608110 - AluSx SINE Alu 0 312 1 2472 67 0 32 chr1 133056253 133056569 -109607784 - AluY SINE Alu -5 306 1 1047 211 5 5 chr1 133056652 133056856 -109607497 - AluJb SINE Alu -108 204 1 347 200 42 42 chr1 133059490 133059585 -109604768 + L1MB5 LINE L1 6071 6165 -9 401 279 7 14 chr1 133060588 133060735 -109603618 - MIR SINE MIR -21 241 96 21 36 0 0 chr1 133060882 133060910 -109603443 + AT_rich Low_complexity Low_complexity 1 28 0 1705 172 10 0 chr1 133060912 133061208 -109603145 - AluSg SINE Alu -11 299 1 199 241 133 0 chr1 133065263 133065346 -109599007 - MER5A DNA MER1_type -77 112 19 289 253 44 0 chr1 133065383 133065472 -109598881 - MIR SINE MIR -67 141 47 2037 154 10 0 chr1 133065669 133065974 -109598379 - AluJo SINE Alu -4 308 1 21 0 0 0 chr1 133065983 133066004 -109598349 + AT_rich Low_complexity Low_complexity 1 21 0 1107 211 0 16 chr1 133066070 133066316 -109598037 - L1MB7 LINE L1 -26 6158 5917 * 3466 181 37 16 chr1 133066304 133067338 -109597015 + L1MB7 LINE L1 4903 5963 -221 2319 115 0 0 chr1 133068195 133068507 -109595846 + AluSx SINE Alu 1 312 0 206 232 14 43 chr1 133068834 133068903 -109595450 - L2 LINE L2 -1 3312 3246 368 220 48 120 chr1 133070321 133070674 -109593679 - L2 LINE L2 0 3313 2982 207 266 16 16 chr1 133070686 133070750 -109593603 + MIR SINE MIR 90 153 -109 501 17 0 0 chr1 133071163 133071221 -109593132 + (CA)n Simple_repeat Simple_repeat 1 58 0 558 303 91 23 chr1 133071396 133071617 -109592736 + MIR SINE MIR 21 256 -6 337 267 23 12 chr1 133072413 133072499 -109591854 + L2 LINE L2 3227 3313 0 2357 98 0 0 chr1 133074338 133074633 -109589720 + AluSg SINE Alu 1 295 -15 4494 29 0 0 chr1 133075335 133075856 -109588497 - L1PA5 LINE L1 -8 6146 5626 1779 147 26 0 chr1 133076237 133076502 -109587851 + AluSx SINE Alu 1 272 -40 992 103 13 0 chr1 133076502 133076657 -109587696 + (GAAA)n Simple_repeat Simple_repeat 3 159 0 2398 91 7 0 chr1 133076857 133077166 -109587187 + AluY SINE Alu 1 311 0 2667 71 14 0 chr1 133077499 133077849 -109586504 + THE1A LTR MaLR 1 355 0 10399 73 28 9 chr1 133078116 133079558 -109584795 + HERVL-A1 LTR ERVL 4185 5654 0 2867 78 18 10 chr1 133079558 133079955 -109584398 + MLT2A1 LTR ERVL 1 400 -44 277 98 78 0 chr1 133080016 133080067 -109584286 + MLT2A1 LTR ERVL 390 444 0 286 389 92 22 chr1 133080419 133080823 -109583530 - L2 LINE L2 -339 2975 2544 2006 127 3 52 chr1 133081372 133081680 -109582673 - AluJo SINE Alu -19 293 1 21 36 0 0 chr1 133082885 133082913 -109581440 + AT_rich Low_complexity Low_complexity 1 28 0 354 300 159 19 chr1 133083782 133083965 -109580388 + MIR SINE MIR 4 206 -56 2176 105 3 10 chr1 133083998 133084292 -109580061 + AluSx SINE Alu 1 292 -20 1522 198 59 6 chr1 133084909 133085233 -109579120 + MER58B DNA MER1_type 1 341 0 1066 254 133 42 chr1 133085354 133085862 -109578491 - L2 LINE L2 -1 3312 2757 308 254 14 0 chr1 133086912 133086983 -109577370 - L3 LINE CR1 -54 1523 1452 805 232 179 0 chr1 133087053 133087243 -109577110 + MIR SINE MIR 18 241 -21 2813 148 39 0 chr1 133087353 133087867 -109576486 + L1MB7 LINE L1 5631 6164 -20 431 333 95 9 chr1 133087881 133088091 -109576262 - L3 LINE CR1 -219 1358 1131 636 293 95 17 chr1 133088171 133088320 -109576033 - MIR SINE MIR -11 251 76 2423 71 0 0 chr1 133088320 133088615 -109575738 + AluY SINE Alu 1 295 -16 636 293 95 17 chr1 133088615 133088697 -109575656 - MIR SINE MIR -186 76 2 476 269 24 164 chr1 133088697 133089153 -109575200 - L3 LINE CR1 -433 1144 754 187 300 170 0 chr1 133089163 133089263 -109575090 - MIR3 SINE MIR -3 205 89 198 244 200 11 chr1 133089387 133089477 -109574876 - L3 LINE CR1 -1033 544 438 203 245 61 0 chr1 133089495 133089544 -109574809 + L2 LINE L2 2688 2739 -575 694 126 15 74 chr1 133090863 133090998 -109573355 + FLAM_C SINE Alu 2 128 -5 216 0 0 0 chr1 133091571 133091595 -109572758 + (T)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr1 133091620 133091640 -109572713 + (CAA)n Simple_repeat Simple_repeat 2 21 0 180 111 0 0 chr1 133092747 133092774 -109571579 + (CA)n Simple_repeat Simple_repeat 1 27 0 321 356 62 29 chr1 133093754 133093962 -109570391 + L2 LINE L2 2851 3065 -248 260 322 0 0 chr1 133094029 133094088 -109570265 + L2 LINE L2 3231 3289 -24 344 395 12 6 chr1 133094793 133094965 -109569388 + MIR3 SINE MIR 34 206 -2 223 290 37 47 chr1 133096693 133096800 -109567553 + L3 LINE CR1 1114 1219 -358 198 281 18 18 chr1 133097175 133097232 -109567121 + L2 LINE L2 3244 3300 -13 555 133 4 20 chr1 133098482 133098718 -109565635 + AluJb SINE Alu 1 273 -39 200 243 162 14 chr1 133099559 133099633 -109564720 + MIR SINE MIR 152 236 -26 2462 69 0 0 chr1 133099735 133100038 -109564315 + AluY SINE Alu 1 303 -8 947 189 59 0 chr1 133100094 133100316 -109564037 - MER96B DNA MER1_type? -182 235 1 22 56 0 0 chr1 133101201 133101237 -109563116 + AT_rich Low_complexity Low_complexity 1 36 0 444 300 113 58 chr1 133101431 133101864 -109562489 + L1ME LINE L1 895 1351 -5596 410 306 50 53 chr1 133102057 133102347 -109562006 + L1ME LINE L1 1343 1526 -5333 1787 85 0 0 chr1 133103522 133103746 -109560607 - AluY SINE Alu -9 302 79 4699 59 0 2 chr1 133104033 133104628 -109559725 - L1PA8 LINE L1 -3 6169 5576 2290 121 0 0 chr1 133105906 133106213 -109558140 - AluSg SINE Alu -3 307 1 696 237 147 22 chr1 133107900 133108132 -109556221 - MIR SINE MIR 0 262 2 260 257 67 38 chr1 133108172 133108277 -109556076 - MIR SINE MIR -108 154 47 28 29 0 0 chr1 133108576 133108611 -109555742 + AT_rich Low_complexity Low_complexity 1 35 0 255 242 186 40 chr1 133108693 133108817 -109555536 + MIR3 SINE MIR 35 176 -32 873 206 41 6 chr1 133109179 133109349 -109555004 - MER5A DNA MER1_type -4 185 10 2687 181 109 37 chr1 133109454 133109702 -109554651 + L1MA7 LINE L1 5505 5734 -557 2232 84 44 0 chr1 133109702 133109999 -109554354 + AluSg SINE Alu 1 310 0 2687 181 109 37 chr1 133109999 133110475 -109553878 + L1MA7 LINE L1 5734 6281 -10 891 335 123 15 chr1 133111034 133111591 -109552762 - L2 LINE L2 -8 3305 2692 301 302 12 15 chr1 133112337 133112429 -109551924 + MIR SINE MIR 4 93 -115 2042 170 83 15 chr1 133112438 133112837 -109551516 + MSTB LTR MaLR 1 426 0 321 205 74 74 chr1 133112936 133113058 -109551295 - L2 LINE L2 -9 3304 3183 392 382 68 50 chr1 133114838 133115160 -109549193 + L2 LINE L2 2923 3250 -22 2214 47 87 7 chr1 133115960 133116237 -109548116 - AluY SINE Alu -12 299 1 25 0 0 0 chr1 133116327 133116352 -109548001 + AT_rich Low_complexity Low_complexity 1 25 0 1073 0 0 0 chr1 133116992 133117114 -109547239 - L1PA4 LINE L1 -2 6153 6032 2391 76 0 13 chr1 133117306 133117610 -109546743 + AluY SINE Alu 1 300 -11 461 178 12 49 chr1 133118368 133118531 -109545822 + GA-rich Low_complexity Low_complexity 2 158 0 464 267 46 23 chr1 133119835 133120022 -109544331 - MIR SINE MIR -65 143 5 26 88 0 0 chr1 133121176 133121244 -109543109 + AT_rich Low_complexity Low_complexity 1 68 0 189 0 0 0 chr1 133121997 133122018 -109542335 + (A)n Simple_repeat Simple_repeat 1 21 0 420 223 74 47 chr1 133122375 133122523 -109541830 + Charlie7 DNA MER1_type 1 152 -2460 248 342 18 26 chr1 133122842 133122956 -109541397 + MIR SINE MIR 19 131 -77 183 191 119 0 chr1 133123600 133123642 -109540711 + MIR SINE MIR 183 229 -33 2066 130 0 10 chr1 133123931 133124232 -109540121 + AluSx SINE Alu 1 298 -14 2171 117 0 10 chr1 133124301 133124601 -109539752 - AluSg SINE Alu -13 297 1 485 294 94 8 chr1 133124690 133124925 -109539428 + MER112 DNA MER1_type 2 256 0 467 241 138 49 chr1 133124928 133124980 -109539373 + MIR SINE MIR 5 51 -211 2123 144 0 0 chr1 133124980 133125292 -109539061 - AluJo SINE Alu 0 312 1 467 241 138 49 chr1 133125292 133125463 -109538890 + MIR SINE MIR 51 248 -14 337 293 75 9 chr1 133125628 133125734 -109538619 + L2 LINE L2 3200 3312 -1 933 196 50 11 chr1 133125843 133126022 -109538331 + MER5A DNA MER1_type 1 186 -3 294 29 0 0 chr1 133127773 133127808 -109536545 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 33 0 0 chr1 133127841 133127871 -109536482 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 133127936 133127965 -109536388 + AT_rich Low_complexity Low_complexity 1 29 0 342 336 17 8 chr1 133129259 133129378 -109534975 + MIR SINE MIR 31 141 -67 24 32 0 0 chr1 133129460 133129491 -109534862 + AT_rich Low_complexity Low_complexity 1 31 0 260 185 62 31 chr1 133130272 133130337 -109534016 + MER69 DNA AcHobo 1 67 -110 475 288 127 15 chr1 133130337 133130542 -109533811 - MIR SINE MIR -28 234 7 206 293 25 58 chr1 133131560 133131664 -109532689 + MIR SINE MIR 15 116 -92 214 214 0 24 chr1 133131778 133131820 -109532533 + L2 LINE L2 3199 3239 -74 439 224 126 42 chr1 133132595 133132738 -109531615 + MIR3 SINE MIR 7 161 -47 1283 172 9 0 chr1 133133104 133133319 -109531034 - Tigger1 DNA MER2_type 0 2418 2202 817 184 0 43 chr1 133133308 133133471 -109530882 - Tigger1 DNA MER2_type -2261 157 2 * 574 309 25 0 chr1 133133703 133133904 -109530449 - MIR SINE MIR 0 262 57 358 319 188 6 chr1 133134316 133134476 -109529877 + MIR SINE MIR 22 210 -52 * 403 353 68 18 chr1 133134468 133134689 -109529664 + MIR SINE MIR 5 236 -26 2378 74 7 3 chr1 133134741 133135040 -109529313 + AluSp SINE Alu 1 300 -13 240 254 129 48 chr1 133136687 133136896 -109527457 + L1ME3A LINE L1 5254 5479 -2329 236 274 12 0 chr1 133136917 133137001 -109527352 + (TA)n Simple_repeat Simple_repeat 2 86 0 23 0 0 0 chr1 133137519 133137542 -109526811 + AT_rich Low_complexity Low_complexity 1 23 0 220 253 50 61 chr1 133139092 133139191 -109525162 + L2 LINE L2 3168 3265 -48 281 326 10 0 chr1 133140258 133140356 -109523997 + MER5B DNA MER1_type 1 99 -79 677 289 40 27 chr1 133140636 133140861 -109523492 + L3 LINE CR1 1327 1554 -23 250 268 0 18 chr1 133141829 133141885 -109522468 - L2 LINE L2 -12 3301 3247 220 290 97 0 chr1 133142041 133142103 -109522250 + MIR SINE MIR 32 99 -109 327 261 63 36 chr1 133142108 133142219 -109522134 - MIR SINE MIR -75 133 20 229 350 126 0 chr1 133142824 133142927 -109521426 + MER5B DNA MER1_type 1 116 -62 237 305 108 30 chr1 133144020 133144187 -109520166 - MIR SINE MIR -42 220 41 180 97 0 0 chr1 133145961 133145992 -109518361 + (CCG)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr1 133146383 133146406 -109517947 + GC_rich Low_complexity Low_complexity 1 23 0 195 294 24 47 chr1 133146728 133146813 -109517540 - L2 LINE L2 -1 3271 3189 196 337 11 11 chr1 133146844 133146933 -109517420 - L2 LINE L2 -208 3064 2976 518 275 69 12 chr1 133146945 133147187 -109517166 + L1ME3A LINE L1 5691 5904 -299 242 307 91 62 chr1 133147430 133147704 -109516649 - L2 LINE L2 -461 2853 2572 253 319 44 0 chr1 133148403 133148494 -109515859 + MARNA DNA Mariner 94 188 -398 2359 93 3 3 chr1 133148727 133149029 -109515324 + AluSq SINE Alu 1 302 -11 610 193 56 43 chr1 133149736 133149897 -109514456 - MIR SINE MIR -50 212 50 371 311 50 31 chr1 133150078 133150239 -109514114 - L2 LINE L2 0 3272 3109 195 349 28 57 chr1 133150349 133150455 -109513898 + L2 LINE L2 3150 3252 -20 2048 113 74 47 chr1 133150648 133151012 -109513341 + THE1C LTR MaLR 2 375 0 1809 171 7 0 chr1 133151079 133151372 -109512981 + AluJo SINE Alu 5 299 -13 2017 152 0 10 chr1 133151974 133152277 -109512076 + AluJb SINE Alu 1 300 -12 740 200 131 6 chr1 133153171 133153346 -109511007 + MLT1C LTR MaLR 270 466 -1 280 283 67 25 chr1 133153347 133153467 -109510886 - MER91A DNA MER1_type -71 125 1 1673 157 48 7 chr1 133154220 133154538 -109509815 + AluJo SINE Alu 7 312 0 219 254 15 15 chr1 133154598 133154665 -109509688 + GA-rich Low_complexity Low_complexity 1 67 0 502 281 101 17 chr1 133154980 133155158 -109509195 - MIR SINE MIR -30 232 40 2263 92 0 0 chr1 133155705 133156011 -109508342 - AluSx SINE Alu 0 306 1 197 280 67 63 chr1 133156527 133156766 -109507587 + L2 LINE L2 1427 1666 -1648 441 0 0 0 chr1 133156783 133156832 -109507521 + (CA)n Simple_repeat Simple_repeat 2 50 0 310 332 136 43 chr1 133156943 133157178 -109507175 - L2 LINE L2 -17 3255 2999 897 232 39 0 chr1 133157344 133157525 -109506828 - MER5A DNA MER1_type -1 188 1 390 316 30 15 chr1 133157532 133157665 -109506688 + L2 LINE L2 1846 1980 -1334 412 337 78 30 chr1 133157679 133158011 -109506342 + L2 LINE L2 2625 2972 -342 2551 139 31 35 chr1 133158076 133158426 -109505927 + MSTB LTR MaLR 3 352 -74 1806 179 0 0 chr1 133158426 133158733 -109505620 - AluSx SINE Alu -5 307 1 2551 139 31 35 chr1 133158733 133158807 -109505546 + MSTB LTR MaLR 352 425 -1 590 290 95 30 chr1 133159766 133159997 -109504356 - MIR SINE MIR -12 250 5 227 328 0 0 chr1 133160022 133160083 -109504270 - MIR SINE MIR -115 93 33 2342 77 0 0 chr1 133160883 133161191 -109503162 - AluY SINE Alu 0 308 1 220 226 0 19 chr1 133161737 133161790 -109502563 + MIR SINE MIR 192 243 -19 568 203 80 104 chr1 133161924 133162024 -109502329 - MER106B DNA MER1_type 0 1059 958 3209 159 11 25 chr1 133162024 133162551 -109501802 + MLT2B1 LTR ERVL 1 520 0 568 203 80 104 chr1 133162551 133162662 -109501691 - MER106B DNA MER1_type -101 958 30 183 100 0 0 chr1 133163314 133163344 -109501009 + (CCTAA)n Simple_repeat Simple_repeat 1 30 0 207 209 23 0 chr1 133163687 133163730 -109500623 - MIR SINE MIR -10 252 209 352 311 113 81 chr1 133164205 133164452 -109499901 - L2 LINE L2 -31 3241 3003 1412 212 212 21 chr1 133164452 133164876 -109499477 + MLT1D LTR MaLR 1 505 0 352 311 113 81 chr1 133164876 133165449 -109498904 - L2 LINE L2 -269 3003 2392 289 267 12 0 chr1 133165621 133165707 -109498646 - L2 LINE L2 0 3313 3227 188 78 255 39 chr1 133165923 133165974 -109498379 - MER5C DNA MER1_type 0 324 263 259 149 0 0 chr1 133166121 133166168 -109498185 - MER5C DNA MER1_type -202 122 76 6919 85 16 0 chr1 133166290 133167359 -109496994 - L1PA11 LINE L1 0 6174 5089 392 341 209 11 chr1 133167965 133168414 -109495939 + L2 LINE L2 2079 2616 -698 2572 40 0 10 chr1 133169120 133169254 -109495099 + AluY SINE Alu 1 135 -176 2639 32 7 3 chr1 133169254 133169564 -109494789 + AluY SINE Alu 1 311 0 2572 40 0 10 chr1 133169564 133169728 -109494625 + AluY SINE Alu 135 296 -15 293 322 94 28 chr1 133169784 133169964 -109494389 - L2 LINE L2 -188 3084 2893 218 352 19 19 chr1 133170062 133170167 -109494186 - L2 LINE L2 -541 2773 2669 218 396 44 0 chr1 133170187 133170278 -109494075 + L2 LINE L2 3128 3222 -50 1405 124 0 15 chr1 133170310 133170511 -109493842 + AluSg/x SINE Alu 86 283 -29 425 281 100 0 chr1 133170558 133170718 -109493635 + MIR3 SINE MIR 30 205 -3 180 273 78 39 chr1 133171635 133171712 -109492641 + L2 LINE L2 1697 1776 -1538 2200 72 0 7 chr1 133172366 133172644 -109491709 - AluSc SINE Alu -6 303 28 793 237 118 28 chr1 133173568 133173779 -109490574 + MIR SINE MIR 23 252 -10 2135 135 0 0 chr1 133173928 133174232 -109490121 + AluSx SINE Alu 3 306 -6 249 273 0 0 chr1 133174487 133174542 -109489811 + (TATG)n Simple_repeat Simple_repeat 2 56 0 329 273 0 0 chr1 133175455 133175521 -109488832 + L2 LINE L2 3207 3272 0 2045 106 31 14 chr1 133175817 133176109 -109488244 - AluSx SINE Alu -15 297 1 334 304 26 0 chr1 133176704 133176819 -109487534 + MIR SINE MIR 63 180 -82 682 257 65 48 chr1 133176935 133177227 -109487126 - L2 LINE L2 -4 3309 3013 238 301 143 23 chr1 133178351 133178484 -109485869 + L2 LINE L2 1751 1899 -1415 2196 74 30 0 chr1 133178885 133179156 -109485197 + AluSc SINE Alu 14 292 -17 4649 24 6 0 chr1 133179286 133179797 -109484556 - L1PA3 LINE L1 0 6155 5642 2827 28 3 0 chr1 133179797 133180124 -109484229 + L1PA3 LINE L1 5347 5674 -481 22 0 0 0 chr1 133184770 133184792 -109479561 + AT_rich Low_complexity Low_complexity 1 22 0 388 131 0 0 chr1 133185930 133185991 -109478362 - MER41A LTR ERV1 -88 466 406 786 218 0 123 chr1 133186237 133186457 -109477896 + MER77 LTR ERV1 1 193 -412 265 235 10 20 chr1 133186490 133186588 -109477765 + (TA)n Simple_repeat Simple_repeat 1 97 0 582 243 0 0 chr1 133188733 133188964 -109475389 + G-rich Low_complexity Low_complexity 1 231 0 4734 95 9 0 chr1 133189061 133189743 -109474610 + L1P LINE L1 2539 3226 -2920 1825 155 0 0 chr1 133190461 133190732 -109473621 + AluSx SINE Alu 38 308 -4 386 179 42 42 chr1 133193837 133193932 -109470421 + L1MB5 LINE L1 6071 6165 -9 447 279 7 14 chr1 133194931 133195078 -109469275 - MIR SINE MIR -21 241 96 1735 173 10 0 chr1 133195244 133195551 -109468802 - AluSg SINE Alu 0 310 1 201 358 73 0 chr1 133198087 133198210 -109466143 - MIR SINE MIR -13 249 118 258 311 91 8 chr1 133199557 133199689 -109464664 - MER5A DNA MER1_type -28 161 19 315 252 44 0 chr1 133199726 133199815 -109464538 - MIR SINE MIR -67 141 47 2032 152 10 0 chr1 133200012 133200315 -109464038 - AluJo SINE Alu -6 306 1 216 0 0 0 chr1 133200324 133200348 -109464005 + (T)n Simple_repeat Simple_repeat 1 24 0 1130 211 0 16 chr1 133200417 133200663 -109463690 - L1MB7 LINE L1 -26 6158 5917 * 4446 174 47 23 chr1 133200651 133201886 -109462467 + L1MB8 LINE L1 4903 6172 -6 397 336 48 7 chr1 133201968 133202114 -109462239 - MIR3 SINE MIR -39 169 18 2305 116 0 0 chr1 133202940 133203251 -109461102 + AluSx SINE Alu 1 311 -1 228 264 11 46 chr1 133203582 133203669 -109460684 - L2 LINE L2 -1 3312 3229 457 221 62 122 chr1 133205069 133205422 -109458931 - L2 LINE L2 0 3313 2982 200 266 16 16 chr1 133205434 133205498 -109458855 + MIR SINE MIR 90 153 -109 234 0 0 0 chr1 133205928 133205954 -109458399 + (CA)n Simple_repeat Simple_repeat 1 26 0 515 308 91 23 chr1 133206129 133206350 -109458003 + MIR SINE MIR 21 256 -6 317 279 23 12 chr1 133207147 133207233 -109457120 + L2 LINE L2 3227 3313 0 2403 96 0 0 chr1 133209069 133209370 -109454983 + AluSg SINE Alu 1 301 -9 207 0 0 0 chr1 133210054 133210077 -109454276 + (TTA)n Simple_repeat Simple_repeat 3 25 0 4666 30 0 0 chr1 133210077 133210586 -109453767 - L1PA5 LINE L1 -18 6136 5628 183 307 93 13 chr1 133211059 133211134 -109453219 - MIR3 SINE MIR -40 168 88 319 86 0 35 chr1 133211562 133211620 -109452733 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 21 0 0 0 chr1 133213442 133213463 -109450890 + AT_rich Low_complexity Low_complexity 1 21 0 827 312 149 17 chr1 133213550 133214086 -109450267 - L2 LINE L2 -343 2971 2365 705 257 16 22 chr1 133215555 133215738 -109448615 - MIR SINE MIR -28 234 53 2037 126 27 0 chr1 133215924 133216218 -109448135 - AluSx SINE Alu -10 302 1 259 323 24 47 chr1 133216408 133216535 -109447818 - MIR SINE MIR -56 152 29 234 175 0 0 chr1 133216983 133217023 -109447330 + LTR16C LTR ERVL 405 444 -47 519 228 110 27 chr1 133217028 133217041 -109447312 - HAL1 LINE L1 -1313 1194 1184 2928 3 0 0 chr1 133217041 133217352 -109447001 - AluY SINE Alu 0 311 1 519 228 110 27 chr1 133217352 133217601 -109446752 - HAL1 LINE L1 -1323 1184 910 * 1500 237 132 44 chr1 133217594 133218079 -109446274 - HAL1 LINE L1 -1804 703 158 2086 110 0 24 chr1 133218079 133218394 -109445959 - AluSx SINE Alu 0 308 1 1500 237 132 44 chr1 133218394 133218476 -109445877 - HAL1 LINE L1 -2349 158 85 280 219 97 35 chr1 133218565 133218679 -109445674 + L1MC4a LINE L1 6044 6164 -1644 290 203 109 0 chr1 133218685 133218749 -109445604 - HAL1 LINE L1 -2436 71 1 2002 115 0 91 chr1 133219007 133219338 -109445015 + AluSx SINE Alu 1 301 -11 356 122 0 23 chr1 133219343 133219420 -109444933 + Alu SINE Alu 243 301 -1 621 225 35 47 chr1 133219428 133219665 -109444688 + L1MC/D LINE L1 5279 5513 -667 223 271 65 37 chr1 133219848 133219955 -109444398 - MIR SINE MIR -10 252 143 262 267 0 0 chr1 133220686 133220746 -109443607 + (TG)n Simple_repeat Simple_repeat 1 60 0 454 329 90 0 chr1 133221046 133221213 -109443140 + MIR SINE MIR 3 184 -78 252 376 32 0 chr1 133221276 133221401 -109442952 - MIR3 SINE MIR -66 142 14 358 357 28 7 chr1 133221920 133222063 -109442290 + MIR3 SINE MIR 30 175 -33 802 294 13 13 chr1 133222512 133222747 -109441606 + MIR SINE MIR 7 241 -21 858 173 45 17 chr1 133223476 133223655 -109440698 - MER53 DNA DNA -5 184 1 232 260 56 78 chr1 133225188 133225419 -109438934 - L1ME4a LINE L1 -65 6056 5831 308 184 29 0 chr1 133226305 133226381 -109437972 - MIR SINE MIR -74 188 111 1897 142 103 16 chr1 133226392 133226702 -109437651 + MER1B DNA MER1_type 1 337 0 246 298 33 46 chr1 133226737 133226888 -109437465 - L1ME4a LINE L1 -38 6083 5935 1442 200 14 0 chr1 133226953 133227228 -109437125 - MLT1C LTR MaLR -2 465 187 282 298 81 19 chr1 133227462 133227623 -109436730 - L1ME4a LINE L1 -96 6025 5855 333 250 44 88 chr1 133227815 133227951 -109436402 - MIR3 SINE MIR -21 187 58 273 57 0 0 chr1 133228506 133228541 -109435812 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 315 229 164 25 chr1 133228608 133228730 -109435623 - Charlie7 DNA MER1_type -2469 143 5 407 298 62 26 chr1 133229119 133229292 -109435061 + MIR SINE MIR 8 191 -17 561 235 59 30 chr1 133229302 133229510 -109434843 - MIR SINE MIR -46 216 8 2123 117 3 29 chr1 133229620 133229936 -109434417 - AluSg SINE Alu -2 308 1 183 306 180 0 chr1 133230082 133230193 -109434160 + MIR3 SINE MIR 62 192 -16 526 261 75 6 chr1 133231164 133231325 -109433028 - MIR3 SINE MIR -8 200 29 21 0 0 0 chr1 133231368 133231389 -109432964 + AT_rich Low_complexity Low_complexity 1 21 0 637 245 101 63 chr1 133231475 133231711 -109432642 - MIR SINE MIR -10 252 4 1246 254 83 34 chr1 133231789 133232378 -109431975 - L2 LINE L2 0 3313 2699 2512 119 9 0 chr1 133232389 133232733 -109431620 - L1PB3 LINE L1 -2 6152 5806 531 284 114 53 chr1 133232837 133233196 -109431157 - L2 LINE L2 -1151 2163 1783 249 197 70 14 chr1 133233852 133233923 -109430430 + MIR SINE MIR 129 203 -59 453 96 145 12 chr1 133233984 133234067 -109430286 - MER85 DNA T2_type -45 94 1 418 265 61 44 chr1 133234904 133235085 -109429268 - MIR SINE MIR -66 196 13 541 300 109 9 chr1 133235250 133235320 -109429033 + MIR SINE MIR 2 64 -198 3048 152 21 6 chr1 133235320 133235832 -109428521 - L1MC1 LINE L1 0 6333 5814 541 300 109 9 chr1 133235832 133235981 -109428372 + MIR SINE MIR 64 243 -19 829 288 74 82 chr1 133236004 133236518 -109427835 - L2 LINE L2 0 3313 2804 245 280 17 25 chr1 133236592 133236710 -109427643 + GA-rich Low_complexity Low_complexity 2 118 0 406 300 91 38 chr1 133236730 133237070 -109427283 - L2 LINE L2 -1354 1960 1603 228 94 0 0 chr1 133237849 133237881 -109426472 - L1MB7 LINE L1 -1494 4652 4621 * 1907 175 39 13 chr1 133237879 133238261 -109426092 + L1MB7 LINE L1 4635 5026 -1120 183 42 0 0 chr1 133238610 133238634 -109425719 + (CAG)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr1 133239341 133239376 -109424977 + AT_rich Low_complexity Low_complexity 1 35 0 2140 101 25 0 chr1 133240429 133240715 -109423638 - AluSg SINE Alu -17 293 1 189 0 0 0 chr1 133241732 133241753 -109422600 + (T)n Simple_repeat Simple_repeat 1 21 0 212 179 0 0 chr1 133242068 133242107 -109422246 + A-rich Low_complexity Low_complexity 1 39 0 4534 167 52 27 chr1 133242159 133243270 -109421083 + L1MB7 LINE L1 5052 6184 0 25 23 0 23 chr1 133243936 133243955 -109420398 + AT_rich Low_complexity Low_complexity 1 19 -23 2295 96 10 13 chr1 133243955 133244267 -109420086 - AluSq SINE Alu -2 311 1 25 23 0 23 chr1 133244267 133244290 -109420063 + AT_rich Low_complexity Low_complexity 19 42 0 5567 129 8 38 chr1 133244290 133244970 -109419383 - L1PA16 LINE L1 -9 6157 5458 2293 121 0 0 chr1 133244970 133245276 -109419077 - AluSx SINE Alu -6 306 1 5567 129 8 38 chr1 133245276 133245452 -109418901 - L1PA16 LINE L1 -708 5458 5323 1982 142 7 0 chr1 133245452 133245755 -109418598 - AluSx SINE Alu 0 305 1 5567 129 8 38 chr1 133245755 133245855 -109418498 - L1PA16 LINE L1 -843 5323 5222 4144 223 29 26 chr1 133245985 133246877 -109417476 + MLT1A1-int LTR MaLR 841 1735 0 1673 184 38 32 chr1 133246877 133247224 -109417129 + MLT1A1 LTR MaLR 1 349 -16 1048 151 14 58 chr1 133247431 133247681 -109416672 + MLT2A2 LTR ERVL 287 453 0 3951 216 38 23 chr1 133247681 133248497 -109415856 - L1M2 LINE L1 -6020 829 2 1035 188 0 0 chr1 133252436 133252606 -109411747 - FRAM SINE Alu -1 175 6 463 262 99 54 chr1 133252626 133252920 -109411433 + L1ME3 LINE L1 5589 5915 -247 218 240 115 39 chr1 133253189 133253293 -109411060 - MIR SINE MIR -2 260 149 189 305 40 93 chr1 133253932 133254083 -109410270 - L2 LINE L2 -2833 481 339 596 300 124 63 chr1 133254360 133255003 -109409350 - L2 LINE L2 -3 3269 2572 209 205 0 0 chr1 133255561 133255600 -109408753 + T-rich Low_complexity Low_complexity 4 42 0 262 299 0 0 chr1 133255746 133255813 -109408540 + tRNA-Ile-ATT tRNA tRNA 7 73 -4 225 356 137 11 chr1 133256760 133257300 -109407053 + L2 LINE L2 1707 2314 -1000 303 233 0 35 chr1 133257694 133257780 -109406573 + MIR SINE MIR 126 208 -54 234 270 170 0 chr1 133258608 133258708 -109405645 - MIR3 SINE MIR -3 205 89 190 236 202 11 chr1 133258832 133258921 -109405432 - L3 LINE CR1 -1034 543 438 200 245 61 0 chr1 133258939 133258988 -109405365 + L2 LINE L2 2688 2739 -575 572 187 0 0 chr1 133260306 133260397 -109403956 + AluSg SINE Alu 1 91 -219 5123 79 7 0 chr1 133260594 133261612 -109402741 - L1PA7 LINE L1 -428 5726 4705 3291 60 2 8 chr1 133261612 133262009 -109402344 + L1PA7 LINE L1 5759 6154 0 203 152 0 0 chr1 133262860 133262893 -109401460 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1141 229 51 81 chr1 133263904 133264178 -109400175 - L1M4c LINE L1 -3675 2707 2426 1902 159 34 0 chr1 133264178 133264474 -109399879 - AluSx SINE Alu -6 306 1 1141 229 51 81 chr1 133264474 133265125 -109399228 - L1M4c LINE L1 -3956 2426 1795 2096 83 4 0 chr1 133265242 133265533 -109398820 + AluY SINE Alu 19 310 0 2339 222 32 14 chr1 133266789 133267636 -109396717 + L1ME LINE L1 4960 5814 -352 2475 84 0 0 chr1 133268629 133268940 -109395413 - AluY SINE Alu 0 311 1 639 200 36 36 chr1 133269028 133269193 -109395160 - MIR SINE MIR -30 232 68 5016 184 11 19 chr1 133269289 133270415 -109393938 - L1MB2 LINE L1 -3 6168 5064 1226 141 0 5 chr1 133270420 133270611 -109393742 - AluSg/x SINE Alu -2 308 119 881 217 13 58 chr1 133270658 133270884 -109393469 - AluJb SINE Alu -3 309 94 1874 138 72 3 chr1 133272460 133272778 -109391575 - L1PA13 LINE L1 -5 6158 5819 213 257 219 0 chr1 133274354 133274459 -109389894 + L3 LINE CR1 1191 1318 -259 1034 185 6 6 chr1 133274552 133274730 -109389623 - MSTB1 LTR MaLR 0 432 255 601 121 11 0 chr1 133274731 133274822 -109389531 - MSTB1 LTR MaLR -340 92 1 352 318 156 6 chr1 133274932 133275105 -109389248 - MLT1J2 LTR MaLR -182 264 66 1193 176 45 0 chr1 133275273 133275494 -109388859 - L1M4c LINE L1 -4775 1609 1379 369 0 0 0 chr1 133276277 133276318 -109388035 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 753 206 6 24 chr1 133276318 133276488 -109387865 - AluSp SINE Alu -10 303 137 25 0 0 0 chr1 133276752 133276777 -109387576 + AT_rich Low_complexity Low_complexity 1 25 0 289 108 62 62 chr1 133276777 133276799 -109387554 + MER3 DNA MER1_type 131 152 -57 2221 85 3 24 chr1 133276799 133277094 -109387259 - AluSc SINE Alu -20 289 1 289 108 62 62 chr1 133277094 133277136 -109387217 + MER3 DNA MER1_type 151 195 -14 288 148 66 0 chr1 133277229 133277290 -109387063 - L1P5 LINE L1 -705 5451 5387 1095 285 80 6 chr1 133277647 133278140 -109386213 + L1ME LINE L1 5221 5758 -404 3185 183 81 18 chr1 133278277 133278933 -109385420 + MLT-int LTR MaLR 1 697 -1038 10145 157 28 5 chr1 133279046 133280718 -109383635 - L1M2 LINE L1 -4310 2539 830 1055 108 38 0 chr1 133280722 133280879 -109383474 + MLT2A2 LTR ERVL 1 163 -290 311 269 0 0 chr1 133280979 133281072 -109383281 + T-rich Low_complexity Low_complexity 1 93 0 224 220 0 28 chr1 133281097 133281206 -109383147 + T-rich Low_complexity Low_complexity 1 106 0 504 215 127 38 chr1 133283492 133283650 -109380703 + MIR SINE MIR 8 179 -83 307 375 47 0 chr1 133283734 133283862 -109380491 - L2 LINE L2 -6 3266 3133 2076 176 89 68 chr1 133286556 133287086 -109377267 - LTR55 LTR ERV -7 541 1 3180 184 22 8 chr1 133288638 133289121 -109375232 - MER6 DNA MER2_type -3 862 276 2377 71 0 3 chr1 133289121 133289418 -109374935 - AluY SINE Alu -15 296 1 3180 184 22 8 chr1 133289418 133289715 -109374638 - MER6 DNA MER2_type -589 276 -15 411 329 48 7 chr1 133290902 133291048 -109373305 + MIR3 SINE MIR 18 169 -39 4484 176 44 20 chr1 133291130 133292365 -109371988 - L1MB8 LINE L1 -6 6172 4903 534 281 164 0 chr1 133292366 133292537 -109371816 - MIR SINE MIR -49 213 15 198 118 0 0 chr1 133292551 133292585 -109371768 + (CCTA)n Simple_repeat Simple_repeat 1 34 0 245 286 200 0 chr1 133293429 133293499 -109370854 + L2 LINE L2 3134 3217 -55 215 298 88 41 chr1 133293933 133294076 -109370277 - MIR SINE MIR -62 146 7 2258 97 7 7 chr1 133295687 133295995 -109368358 - AluY SINE Alu -3 308 1 264 303 116 113 chr1 133297656 133298247 -109366106 + L2 LINE L2 2662 3272 0 396 144 22 11 chr1 133298495 133298585 -109365768 + (TA)n Simple_repeat Simple_repeat 2 92 0 269 302 28 93 chr1 133298609 133298824 -109365529 - L2 LINE L2 -2775 539 339 602 306 121 60 chr1 133299103 133299746 -109364607 - L2 LINE L2 -3 3269 2572 1166 211 97 26 chr1 133301066 133301449 -109362904 - L1ME3 LINE L1 -3 6159 5750 698 276 113 57 chr1 133301640 133301894 -109362459 + LTR33 LTR ERVL 17 255 -266 2425 123 0 21 chr1 133301894 133302234 -109362119 - MER1B DNA MER1_type 0 337 5 698 276 113 57 chr1 133302234 133302457 -109361896 + LTR33 LTR ERVL 255 521 0 610 206 132 12 chr1 133308569 133308783 -109355570 - MER106B DNA MER1_type 0 1059 2 266 261 34 45 chr1 133309824 133309912 -109354441 - MER5A DNA MER1_type -3 186 100 429 239 88 18 chr1 133311047 133311160 -109353193 - L2 LINE L2 0 3272 3152 282 265 51 20 chr1 133311206 133311304 -109353049 + MIR SINE MIR 112 212 -50 423 0 0 0 chr1 133311784 133311831 -109352522 + (CA)n Simple_repeat Simple_repeat 2 48 0 322 235 148 17 chr1 133311854 133311969 -109352384 + MIR SINE MIR 8 137 -125 300 200 0 0 chr1 133312661 133312726 -109351627 + (TG)n Simple_repeat Simple_repeat 2 66 0 6028 121 19 0 chr1 133313403 133314467 -109349886 - L1PA11 LINE L1 0 6174 5089 351 343 209 11 chr1 133315074 133315523 -109348830 + L2 LINE L2 2079 2616 -698 2593 44 0 0 chr1 133316229 133316524 -109347829 + AluY SINE Alu 1 295 -16 282 328 94 28 chr1 133316580 133316760 -109347593 - L2 LINE L2 -188 3084 2893 218 352 19 19 chr1 133316858 133316963 -109347390 - L2 LINE L2 -541 2773 2669 218 396 44 0 chr1 133316983 133317074 -109347279 + L2 LINE L2 3128 3222 -50 1432 123 0 15 chr1 133317106 133317310 -109347043 + AluSg/x SINE Alu 86 286 -26 425 281 100 0 chr1 133317352 133317512 -109346841 + MIR3 SINE MIR 30 205 -3 180 273 78 39 chr1 133318429 133318506 -109345847 + L2 LINE L2 1697 1776 -1538 7508 171 36 11 chr1 133318731 133321300 -109343053 - L1PA15 LINE L1 -231 6585 1420 1021 220 34 60 chr1 133321307 133321724 -109342629 - MSTB2 LTR MaLR 0 457 1 213 381 45 13 chr1 133321762 133321917 -109342436 - L2 LINE L2 -301 2971 2812 1950 98 79 0 chr1 133321999 133322276 -109342077 + AluSg SINE Alu 1 299 -11 284 186 77 0 chr1 133323446 133323509 -109340844 + MIR SINE MIR 34 100 -108 685 179 31 107 chr1 133324820 133325016 -109339337 + MIR SINE MIR 7 187 -75 193 208 62 0 chr1 133325396 133325444 -109338909 + L2 LINE L2 2932 2982 -290 225 83 0 0 chr1 133327209 133327245 -109337108 + (A)n Simple_repeat Simple_repeat 1 36 0 680 254 90 33 chr1 133328010 133328254 -109336099 + MIR SINE MIR 5 262 0 542 271 8 8 chr1 133328981 133329103 -109335250 + L2 LINE L2 3188 3309 -4 440 240 116 16 chr1 133329236 133329357 -109334996 - L2 LINE L2 -6 3307 3175 217 250 29 22 chr1 133329762 133329771 -109334582 + (TA)n Simple_repeat Simple_repeat 2 9 -129 1896 158 0 7 chr1 133329771 133330062 -109334291 + AluJo SINE Alu 1 289 -23 217 250 29 22 chr1 133330062 133330188 -109334165 + (TA)n Simple_repeat Simple_repeat 9 138 0 21 0 0 0 chr1 133330757 133330778 -109333575 + AT_rich Low_complexity Low_complexity 1 21 0 2122 130 0 3 chr1 133331249 133331549 -109332804 + AluSg SINE Alu 1 299 -11 1697 170 0 21 chr1 133332052 133332372 -109331981 + AluSx SINE Alu 1 314 0 1042 291 105 29 chr1 133332481 133332958 -109331395 + LTR33 LTR ERVL 1 513 -8 2417 67 0 19 chr1 133334229 133334544 -109329809 - AluSc SINE Alu 0 309 1 1932 157 3 22 chr1 133334612 133334931 -109329422 - AluSq SINE Alu 0 313 1 5056 123 49 6 chr1 133334955 133335785 -109328568 - L1PA16 LINE L1 -8 6158 5293 225 236 18 0 chr1 133336160 133336215 -109328138 + (TA)n Simple_repeat Simple_repeat 1 56 0 1493 166 29 16 chr1 133336287 133336594 -109327759 - L1MA5 LINE L1 -910 5236 4926 * 5361 152 56 6 chr1 133336584 133337074 -109327279 + L1MA5 LINE L1 5255 5719 -581 357 24 0 0 chr1 133337074 133337116 -109327237 + (CA)n Simple_repeat Simple_repeat 2 43 0 5361 152 56 6 chr1 133337116 133337621 -109326732 + L1MA5 LINE L1 5719 6300 0 634 263 76 27 chr1 133339050 133339274 -109325079 - MIR SINE MIR 0 262 28 24 0 0 0 chr1 133339441 133339465 -109324888 + AT_rich Low_complexity Low_complexity 1 24 0 1951 136 51 20 chr1 133340528 133340881 -109323472 + MLT1A1 LTR MaLR 2 365 0 624 197 7 51 chr1 133341672 133341809 -109322544 + MER5B DNA MER1_type 1 131 -47 472 178 67 61 chr1 133342172 133342352 -109322001 + L1ME4a LINE L1 5764 5944 -177 2105 137 0 0 chr1 133342576 133342876 -109321477 + AluSg SINE Alu 1 300 -10 569 267 175 5 chr1 133342922 133343128 -109321225 - MIR SINE MIR -15 247 7 988 164 17 69 chr1 133344508 133344739 -109319614 + MER20 DNA MER1_type 1 219 0 655 243 22 22 chr1 133344755 133344940 -109319413 + MIR SINE MIR 68 252 -10 24 53 0 0 chr1 133345148 133345186 -109319167 + AT_rich Low_complexity Low_complexity 1 38 0 506 296 74 67 chr1 133345690 133345960 -109318393 + L2 LINE L2 2997 3268 -4 2168 104 0 7 chr1 133347113 133347412 -109316941 + AluSx SINE Alu 1 297 -15 4659 89 2 3 chr1 133347619 133348251 -109316102 + LTR10E LTR ERV1 1 631 -2 257 265 0 29 chr1 133348369 133348437 -109315916 + L2 LINE L2 3205 3270 -2 301 264 35 11 chr1 133348558 133348645 -109315708 - L2 LINE L2 -2 3311 3223 3969 120 32 19 chr1 133348652 133349279 -109315074 - MER41B LTR ERV1 0 635 1 1843 142 6 54 chr1 133349703 133350020 -109314333 - AluJb SINE Alu -10 302 1 4111 217 41 16 chr1 133351649 133352739 -109311614 + L1MB7 LINE L1 3284 4401 -1745 * 4463 159 18 21 chr1 133352736 133353947 -109310406 + L1PA16 LINE L1 4826 6029 -137 278 95 94 9 chr1 133353956 133354009 -109310344 + L1PA16 LINE L1 6107 6157 -7 3704 180 51 50 chr1 133354014 133354886 -109309467 + L1MB7 LINE L1 4400 5279 -905 414 0 0 0 chr1 133354886 133354932 -109309421 + (CA)n Simple_repeat Simple_repeat 2 47 0 3704 180 51 50 chr1 133354932 133355762 -109308591 + L1MB7 LINE L1 5279 6107 -77 1305 188 99 30 chr1 133355760 133355805 -109308548 + L1MC1 LINE L1 4465 4505 -1641 * 2141 125 0 3 chr1 133355805 133356117 -109308236 + AluSx SINE Alu 1 311 -1 1305 188 99 30 chr1 133356117 133356433 -109307920 + L1MC1 LINE L1 4505 4851 -1295 * 5252 156 38 9 chr1 133356431 133357398 -109306955 + L1MC1 LINE L1 5338 6332 -1 2456 75 0 0 chr1 133357946 133358254 -109306099 - AluY SINE Alu -2 309 2 493 259 113 80 chr1 133358453 133358767 -109305586 - L1MEd LINE L1 -4862 1343 1040 2213 109 0 3 chr1 133358767 133359061 -109305292 - AluSg SINE Alu -17 293 1 493 259 113 80 chr1 133359061 133359321 -109305032 - L1MEd LINE L1 -5165 1040 790 302 350 46 51 chr1 133359705 133359778 -109304575 - L1MEd LINE L1 -6014 382 310 2016 140 125 13 chr1 133359778 133360163 -109304190 + MSTA LTR MaLR 1 428 0 302 350 46 51 chr1 133360163 133360326 -109304027 - L1MEd LINE L1 -6086 310 147 287 193 11 0 chr1 133360355 133360372 -109303981 + (TA)n Simple_repeat Simple_repeat 2 17 -73 2315 135 28 0 chr1 133360372 133360727 -109303626 - MER47A DNA MER2_type -1 365 1 287 193 11 0 chr1 133360727 133360738 -109303615 + (TA)n Simple_repeat Simple_repeat 17 26 -64 1452 196 101 9 chr1 133360738 133361055 -109303298 - MER7A DNA MER2_type -1 345 2 287 193 11 0 chr1 133361055 133361113 -109303240 + (TA)n Simple_repeat Simple_repeat 26 90 0 283 339 89 31 chr1 133361684 133361976 -109302377 - L2 LINE L2 -1402 1912 1604 2122 106 3 20 chr1 133362087 133362381 -109301972 + AluSx SINE Alu 1 298 -14 414 0 0 0 chr1 133362381 133362427 -109301926 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 195 42 0 0 chr1 133362427 133362451 -109301902 + (GA)n Simple_repeat Simple_repeat 2 25 0 295 258 62 9 chr1 133364588 133364708 -109299645 + MIR3 SINE MIR 30 159 -49 24 53 0 0 chr1 133365046 133365084 -109299269 + AT_rich Low_complexity Low_complexity 1 38 0 261 57 0 0 chr1 133365831 133365866 -109298487 + (TC)n Simple_repeat Simple_repeat 1 35 0 1793 186 0 16 chr1 133365965 133366282 -109298071 - AluJo SINE Alu 0 312 1 1983 126 7 19 chr1 133366887 133367197 -109297156 + AluSx SINE Alu 1 306 -6 3155 217 79 23 chr1 133367647 133368954 -109295399 - L1ME1 LINE L1 -5 6230 4859 954 114 0 0 chr1 133368958 133369089 -109295264 - AluSg/x SINE Alu -6 306 176 1259 236 20 3 chr1 133369090 133369386 -109294967 - L1ME1 LINE L1 -1353 4862 4562 285 279 0 0 chr1 133369387 133369448 -109294905 + MER20 DNA MER1_type 2 62 -157 279 0 0 0 chr1 133370111 133370142 -109294211 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2320 100 0 0 chr1 133370274 133370574 -109293779 + AluSc SINE Alu 3 302 -7 1817 158 19 9 chr1 133370598 133370920 -109293433 - L1MB3 LINE L1 -33 6150 5826 829 191 117 11 chr1 133370926 133371114 -109293239 - AluJo SINE Alu -18 294 87 2219 176 18 20 chr1 133371126 133371564 -109292789 - L1MB3 LINE L1 -363 5820 5384 4867 240 86 34 chr1 133371567 133371766 -109292587 - L1ME1 LINE L1 -4578 1818 1631 1018 211 17 0 chr1 133371766 133371941 -109292412 - MER45A DNA AcHobo 0 178 1 4867 240 86 34 chr1 133371941 133372009 -109292344 - L1ME1 LINE L1 -4765 1631 1568 2298 101 3 0 chr1 133372009 133372306 -109292047 - AluSp SINE Alu -15 298 1 4867 240 86 34 chr1 133372306 133372829 -109291524 - L1ME1 LINE L1 -4828 1568 1074 1939 100 66 24 chr1 133372829 133373118 -109291235 - AluSq SINE Alu -12 301 1 4867 240 86 34 chr1 133373118 133374019 -109290334 - L1ME1 LINE L1 -5322 1074 37 621 254 23 23 chr1 133374043 133374216 -109290137 + MER5B DNA MER1_type 2 174 -4 294 301 61 113 chr1 133374299 133374760 -109289593 - L2 LINE L2 -535 2779 2343 2480 65 3 3 chr1 133374922 133375231 -109289122 - AluY SINE Alu -2 309 1 419 39 0 0 chr1 133375290 133375341 -109289012 + AluY SINE Alu 2 52 -258 2302 239 45 8 chr1 133375592 133376107 -109288246 - MLT1E LTR MaLR -59 534 1 2084 202 56 33 chr1 133376370 133376884 -109287469 - L1ME1 LINE L1 -41 6125 5600 1805 156 60 23 chr1 133376884 133377233 -109287120 - MER46B DNA MER2_type -1 235 -1 239 208 75 0 chr1 133377237 133377290 -109287063 - L1ME1 LINE L1 -559 5611 5555 4628 258 46 45 chr1 133377291 133378367 -109285986 - L2 LINE L2 -277 3036 1913 2314 100 0 0 chr1 133378367 133378657 -109285696 + AluSx SINE Alu 2 291 -21 4628 258 46 45 chr1 133378657 133379135 -109285218 - L2 LINE L2 -1400 1913 1437 2201 96 0 10 chr1 133379142 133379457 -109284896 - AluSg SINE Alu 0 310 1 339 293 86 9 chr1 133379718 133379834 -109284519 - L2 LINE L2 0 3272 3148 1371 174 89 26 chr1 133380093 133380397 -109283956 - MER33 DNA MER1_type 0 324 2 841 151 0 43 chr1 133381416 133381555 -109282798 - FLAM_C SINE Alu 0 133 1 664 124 0 99 chr1 133381555 133381676 -109282677 - L1MC1 LINE L1 -9 6324 6216 250 240 229 0 chr1 133381784 133381880 -109282473 - MIR SINE MIR -6 256 139 231 167 0 0 chr1 133381965 133382007 -109282346 - MER116 DNA Mariner -38 42 1 203 364 39 13 chr1 133382007 133382084 -109282269 - MIR SINE MIR -183 79 1 331 272 88 64 chr1 133382419 133382544 -109281809 + L2 LINE L2 3145 3272 0 234 105 0 0 chr1 133382591 133382629 -109281724 + (TCTCTG)n Simple_repeat Simple_repeat 2 39 0 411 21 0 0 chr1 133382629 133382677 -109281676 + (CA)n Simple_repeat Simple_repeat 2 49 0 1886 98 10 85 chr1 133384133 133384481 -109279872 - AluSq SINE Alu 0 325 1 253 319 0 0 chr1 133384936 133385008 -109279345 - L2 LINE L2 -202 3070 2999 515 281 15 59 chr1 133385821 133386091 -109278262 - L1MC5 LINE L1 -95 7866 7609 2380 57 40 3 chr1 133386302 133386602 -109277751 + AluY SINE Alu 1 311 0 1913 62 8 4 chr1 133386847 133387126 -109277227 - AluY SINE Alu 0 318 39 893 306 86 16 chr1 133387556 133387938 -109276415 - L2 LINE L2 -353 2961 2553 1937 152 65 22 chr1 133388293 133388616 -109275737 + MER1B DNA MER1_type 1 337 0 471 298 129 0 chr1 133388814 133388985 -109275368 - MIR SINE MIR -4 258 66 1535 201 145 56 chr1 133390077 133390595 -109273758 - MLT1F1 LTR MaLR 0 555 1 228 288 0 15 chr1 133391077 133391143 -109273210 - Charlie8 DNA MER1_type -8 2409 2345 936 153 28 17 chr1 133391940 133392117 -109272236 - MER96B DNA MER1_type? -238 179 1 1597 170 10 10 chr1 133392448 133392742 -109271611 - AluJb SINE Alu -14 298 5 2612 68 0 0 chr1 133393264 133393573 -109270780 - AluY SINE Alu -2 309 1 584 216 106 5 chr1 133393621 133393707 -109270646 + L1MC4 LINE L1 7817 7893 -149 282 73 0 0 chr1 133393707 133393748 -109270605 + (TG)n Simple_repeat Simple_repeat 2 42 0 584 216 106 5 chr1 133393748 133393860 -109270493 + L1MC4 LINE L1 7893 8035 -7 1728 163 3 24 chr1 133394025 133394319 -109270034 - AluJo SINE Alu -15 297 10 264 245 0 0 chr1 133394351 133394400 -109269953 - L1MC4 LINE L1 -360 7682 7634 258 32 0 0 chr1 133394944 133394975 -109269378 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 345 24 0 0 chr1 133395039 133395081 -109269272 + (CA)n Simple_repeat Simple_repeat 2 43 0 866 295 19 8 chr1 133395336 133395594 -109268759 - MIR SINE MIR 0 262 2 595 84 63 0 chr1 133395735 133395830 -109268523 - L1MA7 LINE L1 -5 6286 6186 182 359 57 82 chr1 133395897 133396056 -109268297 + L2 LINE L2 3002 3156 -116 43575 49 5 3 chr1 133396437 133402579 -109261774 - L1PA5 LINE L1 0 6154 2 192 260 40 0 chr1 133402781 133402831 -109261522 + MIR SINE MIR 101 152 -56 700 266 23 19 chr1 133402844 133403058 -109261295 + L2 LINE L2 3099 3313 0 1945 213 134 22 chr1 133403099 133403597 -109260756 - MLT1H1 LTR MaLR -1 554 1 333 273 80 90 chr1 133403618 133404006 -109260347 - MLT1H1-int LTR MaLR -27 1344 961 297 146 0 0 chr1 133404549 133404597 -109259756 + 5S rRNA rRNA 1 48 -73 241 271 31 31 chr1 133404938 133405034 -109259319 - MLT1A1-int LTR MaLR -1550 101 6 1731 247 102 33 chr1 133405039 133405557 -109258796 - MLT1H1 LTR MaLR -1 554 1 701 290 27 13 chr1 133405780 133406004 -109258349 + MIR SINE MIR 2 228 -34 2531 46 7 0 chr1 133406330 133406633 -109257720 - AluY SINE Alu -6 305 1 1016 233 41 96 chr1 133406718 133407105 -109257248 - MLT1I LTR MaLR -7 402 37 402 272 65 24 chr1 133407149 133407350 -109257003 + MLT1H LTR MaLR 10 253 -246 21 57 0 0 chr1 133407652 133407687 -109256666 + AT_rich Low_complexity Low_complexity 1 35 0 1547 188 18 99 chr1 133407758 133408151 -109256202 - MLT1A1 LTR MaLR -4 361 1 302 320 112 8 chr1 133408165 133408445 -109255908 + L1ME4a LINE L1 5673 5983 -138 922 285 87 77 chr1 133411690 133412174 -109252179 + L3 LINE CR1 899 1377 -200 2516 68 7 0 chr1 133412174 133412483 -109251870 + AluSp SINE Alu 1 311 -2 2440 56 0 13 chr1 133412483 133412785 -109251568 + AluY SINE Alu 1 298 -13 922 285 87 77 chr1 133412785 133412885 -109251468 + L3 LINE CR1 1376 1490 -87 27 29 0 0 chr1 133412946 133412980 -109251373 + AT_rich Low_complexity Low_complexity 1 34 0 2263 246 56 4 chr1 133413016 133413552 -109250801 - L1ME3A LINE L1 -35 6135 5572 2486 74 0 0 chr1 133413595 133413904 -109250449 + AluY SINE Alu 1 309 -2 639 257 34 6 chr1 133413908 133414087 -109250266 + L1ME LINE L1 5352 5535 -627 742 173 144 24 chr1 133414087 133414295 -109250058 + MER112 DNA MER1_type 17 249 -11 1988 138 3 0 chr1 133414383 133414690 -109249663 + AluSx SINE Alu 1 308 0 200 279 0 73 chr1 133414708 133414776 -109249577 - L2 LINE L2 -41 3231 3169 507 274 153 23 chr1 133414892 133415107 -109249246 - MIR SINE MIR -1 261 19 2730 164 50 38 chr1 133415641 133415683 -109248670 - MLT1D LTR MaLR 0 505 465 2415 91 0 0 chr1 133415683 133415981 -109248372 - AluSx SINE Alu -14 298 1 2730 164 50 38 chr1 133415981 133416437 -109247916 - MLT1D LTR MaLR -40 465 1 204 283 19 0 chr1 133417027 133417080 -109247273 - MIR SINE MIR -138 124 71 2256 109 3 0 chr1 133418164 133418475 -109245878 + AluSx SINE Alu 1 312 0 324 253 148 31 chr1 133418654 133418816 -109245537 - L1ME LINE L1 -386 5735 5555 181 273 0 0 chr1 133418868 133418912 -109245441 - MIR SINE MIR -115 147 104 269 203 0 31 chr1 133420536 133420600 -109243753 + CT-rich Low_complexity Low_complexity 2 63 0 320 218 68 30 chr1 133420724 133420857 -109243496 + L1ME4a LINE L1 5982 6119 -2 634 282 88 5 chr1 133422372 133422588 -109241765 + MIR SINE MIR 3 236 -26 2886 13 0 0 chr1 133423357 133423669 -109240684 - AluYb8 SINE Alu -6 312 1 289 305 106 43 chr1 133424159 133424300 -109240053 + L2 LINE L2 3118 3267 -5 32 0 0 0 chr1 133424394 133424426 -109239927 + AT_rich Low_complexity Low_complexity 1 32 0 510 17 0 0 chr1 133425794 133425853 -109238500 + (TG)n Simple_repeat Simple_repeat 2 60 0 310 122 122 73 chr1 133426399 133426481 -109237872 - MIR3 SINE MIR -27 181 96 555 184 87 102 chr1 133426599 133426805 -109237548 - MER102b DNA MER1_type -2 339 137 2418 78 7 0 chr1 133427358 133427666 -109236687 + AluSp SINE Alu 1 310 -3 858 253 189 43 chr1 133427773 133428368 -109235985 + L2 LINE L2 2641 3309 -4 626 288 175 48 chr1 133428593 133429142 -109235211 + L2 LINE L2 2646 3258 -14 1213 204 44 19 chr1 133429346 133429616 -109234737 - AluJo SINE Alu -1 311 35 2206 100 3 0 chr1 133429962 133430251 -109234102 + AluSx SINE Alu 1 290 -22 33 0 0 0 chr1 133430251 133430284 -109234069 + AT_rich Low_complexity Low_complexity 1 33 0 482 301 124 11 chr1 133430774 133430982 -109233371 - MIR SINE MIR -21 241 9 2159 109 0 0 chr1 133431087 133431391 -109232962 - AluSx SINE Alu 0 304 1 24 0 0 0 chr1 133431468 133431492 -109232861 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr1 133431994 133432021 -109232332 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 698 164 14 0 chr1 133432519 133432659 -109231694 + GA-rich Low_complexity Low_complexity 2 143 0 310 186 23 12 chr1 133432680 133432766 -109231587 + GA-rich Low_complexity Low_complexity 2 88 0 353 295 131 30 chr1 133433253 133433490 -109230863 + MIR SINE MIR 1 261 -1 1163 237 85 75 chr1 133433571 133433627 -109230726 - MLT1H LTR MaLR 0 549 495 873 215 86 14 chr1 133433627 133433836 -109230517 + MER58A DNA MER1_type 1 224 0 1163 237 85 75 chr1 133433836 133434273 -109230080 - MLT1H LTR MaLR -54 495 51 2901 159 43 4 chr1 133434831 133435320 -109229033 - MER44D DNA MER2_type -39 566 4 231 114 0 0 chr1 133435776 133435811 -109228542 + (A)n Simple_repeat Simple_repeat 1 35 0 211 382 70 32 chr1 133437993 133438150 -109226203 - MIR SINE MIR -16 246 84 437 243 58 64 chr1 133438324 133438426 -109225927 - MIR SINE MIR 0 262 160 5743 68 3 1 chr1 133438426 133439127 -109225226 + L1PA7 LINE L1 5453 6154 0 437 243 58 64 chr1 133439127 133439197 -109225156 - MIR SINE MIR -102 160 91 349 367 209 12 chr1 133439439 133439774 -109224579 + L2 LINE L2 2867 3267 -5 1860 143 33 3 chr1 133439940 133440240 -109224113 - AluSx SINE Alu -3 309 1 441 330 79 31 chr1 133440352 133440579 -109223774 - MIR SINE MIR 0 262 25 25 51 0 0 chr1 133441524 133441563 -109222790 + AT_rich Low_complexity Low_complexity 1 39 0 2140 125 3 0 chr1 133441642 133441938 -109222415 + AluSx SINE Alu 1 297 -15 467 329 115 21 chr1 133442353 133442587 -109221766 - MIR SINE MIR -1 261 6 2481 76 7 0 chr1 133442729 133443032 -109221321 + AluSx SINE Alu 1 305 -7 251 260 63 24 chr1 133443270 133443397 -109220956 + L1ME4a LINE L1 5968 6099 -22 549 345 96 59 chr1 133443400 133444140 -109220213 - L2 LINE L2 -26 3246 2456 412 310 43 0 chr1 133444233 133444349 -109220004 + L2 LINE L2 3122 3242 -30 230 309 37 113 chr1 133444566 133444919 -109219434 - L2 LINE L2 -94 3178 2853 1682 143 3 126 chr1 133445028 133445212 -109219141 - AluJo SINE Alu -1 301 177 1928 108 8 0 chr1 133445212 133445480 -109218873 - AluSp SINE Alu -10 303 34 1682 143 3 126 chr1 133445480 133445637 -109218716 - AluJo SINE Alu -125 177 2 3433 159 29 5 chr1 133446943 133447534 -109216819 - L1MB7 LINE L1 0 6184 5580 198 0 0 0 chr1 133447569 133447591 -109216762 + (T)n Simple_repeat Simple_repeat 1 22 0 431 316 68 16 chr1 133447763 133447953 -109216400 + MIR SINE MIR 24 223 -39 408 387 7 0 chr1 133448569 133448719 -109215634 - L3 LINE CR1 -5 1572 1422 244 231 0 0 chr1 133448799 133448851 -109215502 - L3 LINE CR1 -192 1385 1334 270 307 11 11 chr1 133449086 133449174 -109215179 - MIR SINE MIR -155 107 20 25 31 0 0 chr1 133449302 133449334 -109215019 + AT_rich Low_complexity Low_complexity 1 32 0 2214 126 0 0 chr1 133450448 133450750 -109213603 - AluSx SINE Alu -10 302 1 1496 235 40 123 chr1 133451017 133452194 -109212159 - L2 LINE L2 0 3313 2230 202 250 0 0 chr1 133452375 133452423 -109211930 - L2 LINE L2 -1 3312 3265 251 344 147 23 chr1 133452815 133453074 -109211279 - L2 LINE L2 -995 2319 2029 254 237 93 129 chr1 133453297 133453333 -109211020 - MIR3 SINE MIR -21 187 151 2304 98 0 0 chr1 133453333 133453629 -109210724 + AluY SINE Alu 1 296 -15 254 237 93 129 chr1 133453629 133453731 -109210622 - MIR3 SINE MIR -57 151 54 203 333 21 31 chr1 133453985 133454081 -109210272 + L2 LINE L2 3001 3095 -177 618 227 141 11 chr1 133454083 133454268 -109210085 - MER112 DNA MER1_type -5 255 47 414 164 22 104 chr1 133455996 133456130 -109208223 + MIR3 SINE MIR 38 160 -48 223 299 35 11 chr1 133456161 133456248 -109208105 - MER5A DNA MER1_type -21 168 80 1210 190 37 44 chr1 133456293 133456470 -109207883 - AluJo SINE Alu -17 295 119 2123 125 3 7 chr1 133456470 133456775 -109207578 + AluSx SINE Alu 1 304 -8 1210 190 37 44 chr1 133456775 133456892 -109207461 - AluJo SINE Alu -193 119 3 2025 90 49 0 chr1 133458001 133458288 -109206065 - AluSx SINE Alu 0 304 5 1812 124 6 87 chr1 133458876 133459053 -109205300 - AluJb SINE Alu -15 297 156 441 36 0 0 chr1 133459053 133459108 -109205245 + (TG)n Simple_repeat Simple_repeat 2 56 0 1812 124 6 87 chr1 133459108 133459253 -109205100 - AluJb SINE Alu -156 156 1 253 239 30 15 chr1 133459329 133459396 -109204957 + MIR SINE MIR 91 158 -104 21 0 0 0 chr1 133460388 133460409 -109203944 + AT_rich Low_complexity Low_complexity 1 21 0 616 265 153 14 chr1 133461390 133461613 -109202740 + MIR SINE MIR 9 262 0 336 244 85 0 chr1 133462112 133462194 -109202159 + MIR SINE MIR 42 130 -78 3921 161 41 14 chr1 133462776 133463484 -109200869 + L1MB3 LINE L1 5447 6173 -10 1499 185 32 42 chr1 133463501 133463809 -109200544 + AluJo SINE Alu 1 305 -7 271 271 24 24 chr1 133464287 133464372 -109199981 - L2 LINE L2 -8 3305 3221 2100 121 13 7 chr1 133464515 133464821 -109199532 - AluSg SINE Alu 0 310 3 2293 107 0 0 chr1 133464833 133465131 -109199222 - AluSx SINE Alu -12 300 3 224 299 102 32 chr1 133465132 133465289 -109199064 - L2 LINE L2 -298 2974 2807 285 284 74 0 chr1 133465308 133465389 -109198964 - L2 LINE L2 0 3272 3186 330 350 176 19 chr1 133465602 133466016 -109198337 - L2 LINE L2 -373 2941 2463 339 243 56 19 chr1 133466028 133466135 -109198218 + MIR3 SINE MIR 91 201 -7 183 271 68 0 chr1 133466655 133466714 -109197639 - MIR3 SINE MIR -4 204 142 592 167 0 0 chr1 133466715 133466817 -109197536 - L1MD3 LINE L1 0 7995 7894 515 271 41 0 chr1 133466822 133466944 -109197409 - MIR SINE MIR -57 151 25 1821 116 170 78 chr1 133467926 133468296 -109196057 - MER4A LTR ERV1 0 664 261 366 146 0 0 chr1 133468296 133468351 -109196002 - MER4A LTR ERV1 -566 98 44 10119 195 28 46 chr1 133468362 133468719 -109195634 - L1PB1 LINE L1 -2 6865 6503 479 81 0 14 chr1 133468719 133468793 -109195560 + (TA)n Simple_repeat Simple_repeat 2 74 0 10119 195 28 46 chr1 133468793 133470167 -109194186 - L1PB1 LINE L1 -364 6503 5105 189 0 0 0 chr1 133470167 133470188 -109194165 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 10119 195 28 46 chr1 133470188 133471196 -109193157 - L1PB1 LINE L1 -1762 5105 4080 1539 65 0 0 chr1 133471196 133471382 -109192971 - AluY SINE Alu -8 303 118 10119 195 28 46 chr1 133471382 133471411 -109192942 - L1PB1 LINE L1 -2787 4080 4052 1988 42 0 0 chr1 133471411 133471647 -109192706 - L1PA3 LINE L1 -3 6152 5917 10119 195 28 46 chr1 133471647 133471789 -109192564 - L1PB1 LINE L1 -2815 4052 3909 1149 53 0 0 chr1 133471789 133471920 -109192433 - AluY SINE Alu -179 132 2 10119 195 28 46 chr1 133471920 133472811 -109191542 - L1PB1 LINE L1 -2958 3909 3003 1780 132 104 4 chr1 133472811 133473091 -109191262 + AluSp SINE Alu 1 308 -5 10119 195 28 46 chr1 133473091 133474157 -109190196 - L1PB1 LINE L1 -3864 3003 1959 704 246 5 0 chr1 133474166 133474357 -109189996 - L1PB1 LINE L1 -6666 197 6 268 140 35 18 chr1 133474360 133474417 -109189936 - MER4A LTR ERV1 -606 58 1 378 298 58 0 chr1 133475235 133475356 -109188997 - MIR SINE MIR -13 249 122 503 355 12 6 chr1 133475786 133475955 -109188398 + L3b LINE CR1 1155 1324 -259 256 260 13 26 chr1 133475984 133476061 -109188292 - L2 LINE L2 -1 3312 3237 337 197 171 0 chr1 133476061 133476137 -109188216 - L1ME LINE L1 -471 5695 5607 256 252 37 84 chr1 133476142 133476249 -109188104 - L2 LINE L2 -84 3229 3128 279 292 56 22 chr1 133476352 133476441 -109187912 - MIR SINE MIR -13 249 158 591 217 11 94 chr1 133476456 133476636 -109187717 + AluJb SINE Alu 128 292 -20 4718 128 34 7 chr1 133476636 133477454 -109186899 + L1PA16 LINE L1 5323 6162 -4 2078 241 45 8 chr1 133477585 133478100 -109186253 - MLT1E LTR MaLR -59 534 1 1884 209 51 28 chr1 133478369 133478876 -109185477 - L1ME1 LINE L1 -48 6118 5600 1669 156 60 23 chr1 133478876 133479225 -109185128 - MER46B DNA MER2_type -1 235 -1 4701 257 46 45 chr1 133479283 133480359 -109183994 - L2 LINE L2 -277 3036 1913 2358 90 0 0 chr1 133480359 133480649 -109183704 + AluSx SINE Alu 2 291 -21 4701 257 46 45 chr1 133480649 133481127 -109183226 - L2 LINE L2 -1400 1913 1437 2200 96 0 10 chr1 133481134 133481457 -109182896 - AluSg SINE Alu 0 310 1 353 284 86 9 chr1 133481718 133481834 -109182519 - L2 LINE L2 0 3272 3148 1241 171 88 30 chr1 133482093 133482398 -109181955 - MER33 DNA MER1_type 0 324 2 760 158 0 43 chr1 133483422 133483561 -109180792 - FLAM_C SINE Alu 0 133 1 611 124 0 99 chr1 133483561 133483682 -109180671 - L1MC1 LINE L1 -9 6324 6216 259 213 255 0 chr1 133483790 133483884 -109180469 - MIR SINE MIR -6 256 139 217 347 40 13 chr1 133484011 133484086 -109180267 - MIR SINE MIR -183 79 3 340 248 88 64 chr1 133484426 133484551 -109179802 + L2 LINE L2 3186 3313 0 213 94 0 0 chr1 133484598 133484630 -109179723 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 396 0 0 0 chr1 133484632 133484676 -109179677 + (CA)n Simple_repeat Simple_repeat 2 45 0 1743 106 22 97 chr1 133486133 133486476 -109177877 - AluSq SINE Alu 0 313 1 235 357 12 0 chr1 133486913 133486997 -109177356 - L2 LINE L2 -189 3083 2999 441 254 0 24 chr1 133487915 133488080 -109176273 - L1MC5 LINE L1 -192 7769 7609 2336 63 17 3 chr1 133488291 133488592 -109175761 + AluY SINE Alu 1 305 -6 2342 57 3 0 chr1 133488620 133488903 -109175450 - AluY SINE Alu -27 284 1 253 163 0 0 chr1 133488907 133488956 -109175397 - Alu SINE Alu -6 294 246 2244 101 0 0 chr1 133488959 133489255 -109175098 - AluSx SINE Alu -16 296 1 2471 53 0 0 chr1 133489485 133489787 -109174566 - AluY SINE Alu -6 305 4 610 266 57 24 chr1 133489791 133490003 -109174350 - MIR SINE MIR -22 240 24 185 231 259 28 chr1 133490510 133490618 -109173735 - L2 LINE L2 -575 2739 2607 519 264 204 18 chr1 133491052 133491272 -109173081 - MIR SINE MIR 0 262 2 221 368 40 0 chr1 133491443 133491519 -109172834 + MIR3 SINE MIR 108 186 -22 633 238 14 75 chr1 133491715 133491929 -109172424 - MIR SINE MIR -29 233 33 196 333 99 57 chr1 133492313 133492454 -109171899 - MIR3 SINE MIR -39 169 23 29 0 0 0 chr1 133492544 133492573 -109171780 + AT_rich Low_complexity Low_complexity 1 29 0 335 203 24 130 chr1 133492581 133492704 -109171649 - MIR SINE MIR -32 230 121 698 176 16 43 chr1 133492996 133493184 -109171169 - MER53 DNA DNA -3 186 4 182 298 186 37 chr1 133493829 133494017 -109170336 + L2 LINE L2 2331 2546 -768 2241 122 0 6 chr1 133494185 133494496 -109169857 - AluSx SINE Alu -3 309 1 21 0 0 0 chr1 133494894 133494915 -109169438 + AT_rich Low_complexity Low_complexity 1 21 0 662 286 77 22 chr1 133495655 133495966 -109168387 + L1MC4a LINE L1 5509 5836 -1972 21 0 0 0 chr1 133496170 133496191 -109168162 + AT_rich Low_complexity Low_complexity 1 21 0 3593 172 65 19 chr1 133496194 133496250 -109168103 + L1P4 LINE L1 4280 4332 -1834 2391 51 3 17 chr1 133496250 133496545 -109167808 + AluY SINE Alu 3 293 -18 3593 172 65 19 chr1 133496545 133497744 -109166609 + L1P4 LINE L1 4332 5599 -567 422 336 83 69 chr1 133498529 133498737 -109165616 - L2 LINE L2 0 3272 3068 1810 156 2 101 chr1 133498737 133499142 -109165211 + MLT1A1 LTR MaLR 1 365 0 422 336 83 69 chr1 133499142 133499356 -109164997 - L2 LINE L2 -204 3068 2844 323 333 18 9 chr1 133499447 133499558 -109164795 + L2 LINE L2 2587 2698 -616 236 353 84 21 chr1 133499687 133499877 -109164476 + L2 LINE L2 2686 2887 -427 202 266 303 0 chr1 133499884 133499993 -109164360 - MIR SINE MIR 0 262 121 2347 97 0 28 chr1 133500604 133500924 -109163429 - AluSx SINE Alu -1 311 1 2218 73 29 0 chr1 133500965 133501238 -109163115 + AluSc SINE Alu 13 293 -16 3029 98 32 2 chr1 133501552 133502084 -109162269 - L1P4 LINE L1 -428 5733 5189 2243 133 28 23 chr1 133502256 133502648 -109161705 - Tigger3b DNA MER2_type 0 1232 839 * 3400 125 60 25 chr1 133502643 133503276 -109161077 - Tigger3b DNA MER2_type -576 655 1 189 376 43 43 chr1 133503324 133503441 -109160912 + L2 LINE L2 3151 3267 -5 1678 203 168 59 chr1 133503946 133504536 -109159817 - MLT1E1 LTR MaLR 0 654 1 2002 79 102 0 chr1 133504804 133505070 -109159283 - AluSx SINE Alu -19 293 1 473 18 0 0 chr1 133505769 133505826 -109158527 - U2 snRNA snRNA -131 57 1 342 295 202 0 chr1 133505829 133505954 -109158399 + MIR3 SINE MIR 58 203 -5 439 195 124 87 chr1 133506824 133507106 -109157247 - MER20B DNA MER1_type -427 356 2 200 410 24 0 chr1 133507115 133507198 -109157155 - L2 LINE L2 -92 3180 3096 269 304 71 45 chr1 133509428 133509540 -109154813 - L2 LINE L2 -4 3268 3154 187 276 130 57 chr1 133509683 133509744 -109154609 - L2 LINE L2 0 3313 3258 1919 129 126 9 chr1 133509744 133510070 -109154283 - MLT1A1 LTR MaLR -1 364 1 187 276 130 57 chr1 133510070 133510131 -109154222 - L2 LINE L2 -55 3258 3182 2277 109 0 0 chr1 133510599 133510902 -109153451 + AluSg SINE Alu 1 303 -7 24 0 0 0 chr1 133510960 133510984 -109153369 + AT_rich Low_complexity Low_complexity 1 24 0 198 272 226 17 chr1 133510996 133511167 -109153186 - L2 LINE L2 0 3313 3179 917 204 138 0 chr1 133511167 133511363 -109152990 - MER58A DNA MER1_type 0 224 2 198 272 226 17 chr1 133511363 133511426 -109152927 - L2 LINE L2 -134 3179 3030 * 584 276 107 36 chr1 133511401 133511626 -109152727 - L2 LINE L2 -940 2374 2134 1880 92 75 55 chr1 133512275 133512567 -109151786 + AluSg SINE Alu 1 298 -12 228 269 0 0 chr1 133512714 133512766 -109151587 + L2 LINE L2 3216 3267 -5 1180 144 16 11 chr1 133513875 133514063 -109150290 + MER5A DNA MER1_type 1 189 0 219 277 46 0 chr1 133514083 133514148 -109150205 - MIR SINE MIR -69 139 72 21 57 0 0 chr1 133514191 133514226 -109150127 + AT_rich Low_complexity Low_complexity 1 35 0 752 73 0 0 chr1 133514400 133514496 -109149857 + AluSg/x SINE Alu 202 297 -15 695 201 41 156 chr1 133514683 133514926 -109149427 - L1ME1 LINE L1 -2 6164 5954 256 191 0 0 chr1 133514926 133514968 -109149385 - 5S rRNA rRNA -79 42 1 695 201 41 156 chr1 133514968 133515151 -109149202 - L1ME1 LINE L1 -212 5954 5751 23 33 0 0 chr1 133515161 133515191 -109149162 + AT_rich Low_complexity Low_complexity 1 30 0 295 226 153 0 chr1 133515229 133515353 -109149000 - L1ME4a LINE L1 -20 6101 5959 23 78 0 0 chr1 133515461 133515512 -109148841 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr1 133515674 133515707 -109148646 + AT_rich Low_complexity Low_complexity 1 33 0 2229 122 117 10 chr1 133516474 133516859 -109147494 - MSTA LTR MaLR -2 426 1 300 186 62 71 chr1 133521911 133522024 -109142329 + MIR SINE MIR 94 205 -57 700 161 0 65 chr1 133525720 133525888 -109138465 + L1MB3 LINE L1 6026 6182 -1 384 233 0 12 chr1 133526668 133526754 -109137599 - MIR SINE MIR -90 172 88 3329 142 73 30 chr1 133526802 133527378 -109136975 + MER7C DNA MER2_type 1 601 -1 2126 135 0 0 chr1 133527699 133527987 -109136366 + AluSx SINE Alu 1 288 -24 2434 72 0 31 chr1 133528019 133528339 -109136014 + AluY SINE Alu 1 310 -1 371 312 71 14 chr1 133528456 133528738 -109135615 + L1M4 LINE L1 4405 4702 -1444 21 57 0 0 chr1 133528865 133528900 -109135453 + AT_rich Low_complexity Low_complexity 1 35 0 327 239 119 40 chr1 133528939 133529115 -109135238 + L1M4 LINE L1 5041 5230 -916 354 138 0 0 chr1 133529178 133529236 -109135117 + (TA)n Simple_repeat Simple_repeat 2 59 0 193 143 20 20 chr1 133530902 133530951 -109133402 + CT-rich Low_complexity Low_complexity 2 50 0 1532 114 14 0 chr1 133531611 133531831 -109132522 - AluSg/x SINE Alu -14 296 74 292 286 86 76 chr1 133531831 133531931 -109132422 + L2 LINE L2 3128 3228 -44 4004 252 68 55 chr1 133532026 133532989 -109131364 + L1ME1 LINE L1 421 1370 -4845 2303 93 3 0 chr1 133532989 133533290 -109131063 + AluY SINE Alu 1 302 -9 4004 252 68 55 chr1 133533290 133534685 -109129668 + L1ME1 LINE L1 1370 2759 -3456 2224 257 74 45 chr1 133534692 133535657 -109128696 + L1ME1 LINE L1 3329 4321 -1894 2575 220 69 10 chr1 133535720 133536661 -109127692 + L1ME1 LINE L1 5011 6004 -231 232 181 20 49 chr1 133537789 133537850 -109126503 + MIR SINE MIR 54 111 -108 2443 79 3 0 chr1 133537906 133538211 -109126142 - AluY SINE Alu -5 306 1 583 281 97 22 chr1 133538690 133538918 -109125435 + MIR SINE MIR 18 262 0 1748 177 3 13 chr1 133539673 133539978 -109124375 - AluJb SINE Alu -10 302 1 3682 140 2 19 chr1 133540762 133541298 -109123055 - MER1A DNA MER1_type 0 527 1 2367 83 3 7 chr1 133541556 133541856 -109122497 + AluSp SINE Alu 1 299 -14 214 200 0 0 chr1 133543169 133543209 -109121144 + L2 LINE L2 3258 3297 -16 279 295 44 105 chr1 133544699 133544994 -109119359 + L2 LINE L2 2827 3103 -169 371 272 170 24 chr1 133545316 133545522 -109118831 - MIR SINE MIR -5 257 22 551 216 31 2 chr1 133546243 133546374 -109117979 + MER33 DNA MER1_type 1 122 -88 349 145 4 33 chr1 133546374 133546629 -109117724 + AluJb SINE Alu 1 298 -4 * 805 164 53 39 chr1 133546628 133546835 -109117518 + MER33 DNA MER1_type 114 323 -1 349 271 72 107 chr1 133549936 133550478 -109113875 - HAL1b LINE L1 -443 905 383 283 356 180 22 chr1 133551375 133551642 -109112711 + L2 LINE L2 2662 2970 -344 594 312 98 46 chr1 133552784 133553347 -109111006 + L2 LINE L2 2636 3233 -39 440 259 7 82 chr1 133553351 133553383 -109110970 - MIR3 SINE MIR -19 189 156 203 30 0 61 chr1 133553383 133553416 -109110937 + (CTAAT)n Simple_repeat Simple_repeat 2 32 0 440 259 7 82 chr1 133553416 133553530 -109110823 - MIR3 SINE MIR -52 156 54 3507 259 63 51 chr1 133553925 133555371 -109108982 - L1M4c LINE L1 -4517 1374 28 222 128 0 0 chr1 133556204 133556243 -109108110 + (TG)n Simple_repeat Simple_repeat 1 39 0 376 119 17 0 chr1 133556958 133557017 -109107336 + MER53 DNA DNA 5 64 -125 278 188 62 0 chr1 133557021 133557085 -109107268 + L1MD1 LINE L1 6170 6237 -5 193 270 90 67 chr1 133557423 133557512 -109106841 - MIR SINE MIR -155 107 17 326 285 23 46 chr1 133558092 133558222 -109106131 - MIR3 SINE MIR -70 138 12 486 234 0 108 chr1 133558671 133558904 -109105449 + L1ME2 LINE L1 5926 6119 -45 949 89 7 0 chr1 133558917 133559052 -109105301 - FRAM SINE Alu 0 176 41 386 322 77 38 chr1 133559062 133559453 -109104900 + L1M4 LINE L1 4754 5153 -993 2932 271 62 31 chr1 133559520 133560867 -109103486 - L1M4 LINE L1 -1846 4300 2913 1966 220 135 14 chr1 133561353 133561916 -109102437 - L1ME2 LINE L1 -10 6154 5524 292 284 42 72 chr1 133561644 133561975 -109102378 - L1PA8A LINE L1 -331 5800 5480 * 233 219 78 16 chr1 133562883 133562947 -109101406 - MIR3 SINE MIR -7 201 134 466 284 31 6 chr1 133563542 133563704 -109100649 + LTR33 LTR ERVL 29 194 -327 591 254 52 23 chr1 133563964 133564137 -109100216 + ERVL LTR ERVL 1826 2003 -3761 304 284 0 0 chr1 133564156 133564230 -109100123 + LTR16B LTR ERVL 1 74 -390 1918 222 78 30 chr1 133564918 133565540 -109098813 - MLT1E3 LTR MaLR 0 624 1 342 300 107 42 chr1 133565645 133565908 -109098445 + L1ME LINE L1 129 408 -5988 305 204 41 51 chr1 133566398 133566496 -109097857 + L1ME LINE L1 2713 2809 -3406 285 247 11 0 chr1 133566528 133566617 -109097736 + L1MA10 LINE L1 6241 6330 -4 29 0 0 0 chr1 133566660 133566689 -109097664 + AT_rich Low_complexity Low_complexity 1 29 0 2064 275 21 41 chr1 133566690 133567273 -109097080 + L1ME LINE L1 3933 4489 -1726 2014 129 11 0 chr1 133567273 133567572 -109096781 + AluY SINE Alu 1 297 -14 2064 275 21 41 chr1 133567572 133568001 -109096352 + L1ME LINE L1 4489 4925 -1290 189 0 0 0 chr1 133568176 133568197 -109096156 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 1162 231 44 9 chr1 133568208 133568550 -109095803 + L1ME LINE L1 5368 5721 -512 2370 86 0 3 chr1 133568577 133568942 -109095411 - PABL_A LTR ERV1 0 660 195 468 77 0 0 chr1 133570405 133570470 -109093883 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 21 57 0 0 chr1 133571843 133571878 -109092475 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 133574330 133574351 -109090002 + AT_rich Low_complexity Low_complexity 1 21 0 422 131 182 0 chr1 133575801 133575900 -109088453 + MER53 DNA DNA 5 121 -68 862 186 11 17 chr1 133577412 133577589 -109086764 + L1MD1 LINE L1 6062 6237 -5 455 209 11 0 chr1 133578806 133578897 -109085456 + AluS SINE Alu 1 92 -220 * 574 174 231 0 chr1 133578892 133579013 -109085340 + AluJo/FRAM SINE Alu 156 304 -8 301 260 8 24 chr1 133579193 133579320 -109085033 + (TGAG)n Simple_repeat Simple_repeat 2 126 0 340 219 0 14 chr1 133579323 133579469 -109084884 + GA-rich Low_complexity Low_complexity 2 145 0 309 281 124 16 chr1 133579970 133580091 -109084262 - MIR SINE MIR -112 150 17 250 279 15 118 chr1 133580686 133580822 -109083531 - MIR SINE MIR -70 138 17 480 297 117 57 chr1 133581844 133582211 -109082142 + L2 LINE L2 2845 3233 -39 573 225 54 0 chr1 133582215 133582344 -109082009 - MIR3 SINE MIR -19 189 54 10006 77 8 2 chr1 133582815 133584206 -109080147 - L1P LINE L1 -2920 3226 1828 4334 38 0 0 chr1 133584202 133584701 -109079652 + L1PA4 LINE L1 5494 5992 -163 * 556 209 23 90 chr1 133584823 133585000 -109079353 + AluJb SINE Alu 128 292 -20 5116 126 37 10 chr1 133585000 133585819 -109078534 + L1PA16 LINE L1 5323 6163 -3 2126 258 45 8 chr1 133585950 133586465 -109077888 - MLT1E LTR MaLR -59 534 1 2005 202 56 33 chr1 133586728 133587242 -109077111 - L1ME1 LINE L1 -41 6125 5600 1812 151 60 23 chr1 133587242 133587591 -109076762 - MER46B DNA MER2_type -1 235 -1 234 208 75 0 chr1 133587595 133587648 -109076705 - L1ME1 LINE L1 -559 5611 5555 3044 264 47 47 chr1 133587649 133588722 -109075631 - L2 LINE L2 -277 3036 1921 2403 79 0 0 chr1 133588725 133589029 -109075324 + AluSx SINE Alu 2 305 -7 811 123 0 0 chr1 133589035 133589165 -109075188 + L1P LINE L1 2088 2217 -3929 15430 104 1 0 chr1 133589174 133591257 -109073096 + L1P LINE L1 11 2094 -4052 1371 156 0 4 chr1 133591257 133591488 -109072865 + AluSg SINE Alu 1 230 -80 691 0 0 0 chr1 133592415 133592491 -109071862 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 963 149 0 58 chr1 133592954 133593142 -109071211 + AluSg/x SINE Alu 134 310 -2 324 308 33 98 chr1 133593154 133593368 -109070985 - L1MC/D LINE L1 -2068 5740 5541 2021 169 0 15 chr1 133593374 133593717 -109070636 - MER72 LTR ERV1 -221 501 164 2516 46 0 0 chr1 133593724 133594028 -109070325 - AluY SINE Alu -5 306 3 243 125 0 0 chr1 133594079 133594119 -109070234 + (C)n Simple_repeat Simple_repeat 1 40 0 325 241 9 27 chr1 133594159 133594271 -109070082 + C-rich Low_complexity Low_complexity 3 112 0 468 141 0 0 chr1 133595492 133595563 -109068790 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 1880 136 7 7 chr1 133595687 133595995 -109068358 - AluSx SINE Alu 0 312 5 2260 43 0 0 chr1 133596233 133596509 -109067844 + AluY SINE Alu 1 276 -35 2753 10 0 0 chr1 133597166 133597474 -109066879 - AluYa5 SINE Alu -3 308 1 1805 239 54 18 chr1 133597597 133598213 -109066140 - L1M4 LINE L1 -2471 3675 3038 228 132 0 0 chr1 133598328 133598366 -109065987 - L1PB4 LINE L1 -24 6132 6095 4587 168 12 4 chr1 133598366 133599401 -109064952 - L1PA16 LINE L1 -107 6059 5018 922 171 28 22 chr1 133599566 133599747 -109064606 - MER58 DNA MER1_type -1 2419 2238 408 289 14 7 chr1 133600306 133600448 -109063905 + L2 LINE L2 2351 2493 -821 1154 122 0 0 chr1 133600828 133601000 -109063353 + AluSq SINE Alu 137 308 -5 1432 205 46 61 chr1 133601029 133601424 -109062929 + MLT1B LTR MaLR 1 389 -1 1292 315 46 21 chr1 133602290 133602811 -109061542 + L1MCc LINE L1 31 564 -5859 676 107 48 0 chr1 133603053 133603156 -109061197 + LOR1-int LTR ERV1 3008 3115 -5005 198 0 0 0 chr1 133603156 133603178 -109061175 + (T)n Simple_repeat Simple_repeat 1 22 0 202 229 86 0 chr1 133604000 133604070 -109060283 - L3 LINE CR1 -194 1383 1308 182 279 223 10 chr1 133606654 133606851 -109057502 + L2 LINE L2 2511 2749 -565 297 297 14 43 chr1 133606979 133607117 -109057236 + L2 LINE L2 3180 3313 0 206 313 81 0 chr1 133607249 133607348 -109057005 + L2 LINE L2 1366 1472 -1842 331 302 119 22 chr1 133607397 133607665 -109056688 + L2 LINE L2 1596 1889 -1425 199 275 229 18 chr1 133608276 133608385 -109055968 + L2 LINE L2 3180 3311 -2 200 309 11 11 chr1 133609799 133609893 -109054460 + GA-rich Low_complexity Low_complexity 2 95 0 304 194 40 32 chr1 133609908 133610032 -109054321 + G-rich Low_complexity Low_complexity 4 128 0 227 91 30 0 chr1 133610821 133610854 -109053499 - Alu SINE Alu -259 40 7 4811 62 0 0 chr1 133611080 133611675 -109052678 - L1PA7 LINE L1 -10 6144 5550 538 198 0 0 chr1 133611690 133611796 -109052557 + FLAM_C SINE Alu 2 107 -36 234 0 0 0 chr1 133611796 133611822 -109052531 + (TC)n Simple_repeat Simple_repeat 2 27 0 305 270 34 22 chr1 133611834 133611923 -109052430 + L1MC4 LINE L1 6614 6703 -1339 1308 205 36 36 chr1 133612284 133612323 -109052030 - MLT2B1 LTR ERVL -3 411 374 312 70 0 0 chr1 133612323 133612366 -109051987 + (CA)n Simple_repeat Simple_repeat 2 44 0 1308 205 36 36 chr1 133612366 133612734 -109051619 - MLT2B1 LTR ERVL -40 374 1 2155 113 0 3 chr1 133612877 133613187 -109051166 + AluSq SINE Alu 3 311 -2 578 189 119 14 chr1 133613544 133613687 -109050666 - LOR1a LTR ERV1 -339 158 1 533 176 0 0 chr1 133613687 133613778 -109050575 - LOR1a-int LTR ERV1 0 8120 8030 * 1913 83 4 0 chr1 133613777 133614030 -109050323 - LOR1-int LTR ERV1 -2056 6064 5811 * 6113 129 59 21 chr1 133614019 133615412 -109048941 - LOR1-int LTR ERV1 -1050 4896 3570 544 217 0 0 chr1 133615412 133615561 -109048792 + FLAM_C SINE Alu 38 186 0 5993 109 15 60 chr1 133615571 133616254 -109048099 - LOR1-int LTR ERV1 -4058 4062 3437 1513 160 59 21 chr1 133616254 133616542 -109047811 - AluSx SINE Alu -13 299 1 5993 109 15 60 chr1 133616542 133616864 -109047489 - LOR1-int LTR ERV1 -4683 3437 3102 21 71 0 0 chr1 133616955 133616997 -109047356 + GC_rich Low_complexity Low_complexity 1 42 0 52 41 0 0 chr1 133617055 133617128 -109047225 + GC_rich Low_complexity Low_complexity 1 73 0 1592 215 31 44 chr1 133618964 133619415 -109044938 - MER65A LTR ERV1 0 445 1 204 111 0 0 chr1 133620091 133620127 -109044226 + (GA)n Simple_repeat Simple_repeat 1 36 0 1087 144 17 11 chr1 133620754 133620935 -109043418 + AluJb SINE Alu 83 264 -48 363 323 36 54 chr1 133621028 133621357 -109042996 + L1MC4a LINE L1 5541 5780 -390 342 190 0 0 chr1 133621683 133621741 -109042612 - tRNA-Asn-AAC tRNA tRNA -15 62 5 1291 148 9 0 chr1 133622364 133622587 -109041766 - AluJb SINE Alu -10 302 78 1486 56 51 39 chr1 133622600 133622787 -109041566 - AluY SINE Alu 0 311 119 531 45 0 0 chr1 133622787 133622853 -109041500 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 1486 56 51 39 chr1 133622853 133622899 -109041454 - AluY SINE Alu -192 119 75 591 75 0 0 chr1 133624409 133624489 -109039864 + HY3 scRNA scRNA 21 100 -1 930 156 6 34 chr1 133624565 133624744 -109039609 - AluSx SINE Alu -138 174 1 1012 257 43 77 chr1 133624817 133625347 -109039006 + MER39 LTR ERV1 1 707 0 2203 85 7 0 chr1 133625379 133625673 -109038680 - AluSx SINE Alu -14 298 3 565 276 84 44 chr1 133626069 133626294 -109038059 - MIR SINE MIR -27 235 2 2092 220 39 104 chr1 133626350 133627073 -109037280 + LTR8 LTR ERV1 16 691 0 352 264 45 18 chr1 133627384 133627494 -109036859 - L1ME4a LINE L1 -43 6078 5966 513 282 86 47 chr1 133627704 133627959 -109036394 - HAL1b LINE L1 -149 1199 935 709 257 62 37 chr1 133628012 133628280 -109036073 - L1ME2 LINE L1 -99 6085 5801 228 230 115 44 chr1 133628291 133628404 -109035949 - REP3 LTR ERV -441 121 1 1492 12 0 0 chr1 133628872 133629036 -109035317 - U1 snRNA snRNA -1 164 1 2108 92 10 0 chr1 133629446 133629740 -109034613 - AluSx SINE Alu -8 304 8 385 235 52 26 chr1 133629755 133629870 -109034483 - Charlie4 DNA MER1_type -5 1956 1839 316 219 81 109 chr1 133630350 133630415 -109033938 - L1ME4a LINE L1 -215 5949 5884 3880 141 15 62 chr1 133630415 133631140 -109033213 - LTR8 LTR ERV1 0 691 1 316 219 81 109 chr1 133631140 133631284 -109033069 - L1ME4a LINE L1 -280 5884 5746 1641 224 49 10 chr1 133631284 133631723 -109032630 - LTR56 LTR ERV1 0 445 12 213 121 0 0 chr1 133631902 133631935 -109032418 + (GAAAA)n Simple_repeat Simple_repeat 5 37 0 552 171 22 153 chr1 133631975 133632203 -109032150 - MER4B-int LTR ERV1 -839 5919 5722 2047 116 13 0 chr1 133632524 133632825 -109031528 - AluSx SINE Alu -5 307 3 831 182 27 32 chr1 133632977 133632993 -109031360 - AluJo SINE Alu 0 312 297 1570 186 33 10 chr1 133632993 133633177 -109031176 - AluJo SINE Alu -2 310 115 197 32 0 32 chr1 133633177 133633208 -109031145 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1570 186 33 10 chr1 133633208 133633324 -109031029 - AluJo SINE Alu -197 115 3 831 182 27 32 chr1 133633324 133633494 -109030859 - AluJo SINE Alu -15 297 127 1859 112 0 0 chr1 133633704 133633964 -109030389 - AluSx SINE Alu -12 300 41 589 215 32 57 chr1 133634328 133634486 -109029867 - AluJo/FRAM SINE Alu -12 290 137 1368 170 7 28 chr1 133634489 133634771 -109029582 - AluJb SINE Alu -16 296 21 207 182 0 0 chr1 133635110 133635143 -109029210 + (TATG)n Simple_repeat Simple_repeat 4 36 0 925 198 0 0 chr1 133635536 133635693 -109028660 + FRAM SINE Alu 1 157 -9 259 320 52 36 chr1 133636249 133636443 -109027910 - MER4B-int LTR ERV1 -2278 4523 4327 26 0 0 0 chr1 133636690 133636716 -109027637 + AT_rich Low_complexity Low_complexity 1 26 0 1457 174 14 48 chr1 133636723 133637037 -109027316 + AluJo SINE Alu 1 304 0 1484 183 0 11 chr1 133637176 133637461 -109026892 + AluJo SINE Alu 7 288 -24 1454 175 20 14 chr1 133637619 133637916 -109026437 + AluJb SINE Alu 9 307 -5 645 27 0 0 chr1 133638635 133638710 -109025643 - tRNA-Asn-AAC tRNA tRNA -2 75 1 185 305 38 9 chr1 133639153 133639258 -109025095 + L2 LINE L2 3202 3309 -4 2576 39 0 3 chr1 133639881 133640193 -109024160 + AluY SINE Alu 1 311 0 265 293 56 2 chr1 133640205 133640357 -109023996 - L1MC/D LINE L1 -606 5753 5592 * 551 163 36 20 chr1 133640348 133640543 -109023810 - L1MEc LINE L1 -4258 2305 2062 410 250 86 0 chr1 133640565 133640693 -109023660 - L1MEc LINE L1 -4603 1960 1822 1826 122 0 4 chr1 133640695 133640965 -109023388 - AluSx SINE Alu -7 305 37 2528 200 100 18 chr1 133641177 133641788 -109022565 + MER67B LTR ERV1 1 661 0 688 233 111 116 chr1 133642130 133642730 -109021623 + L1ME2 LINE L1 5536 6134 -36 23 33 0 0 chr1 133642730 133642760 -109021593 + AT_rich Low_complexity Low_complexity 1 30 0 484 262 72 129 chr1 133643315 133643574 -109020779 - L1MEc LINE L1 -4905 1479 1207 216 0 0 0 chr1 133643574 133643598 -109020755 + (TA)n Simple_repeat Simple_repeat 1 24 0 484 262 72 129 chr1 133643598 133644043 -109020310 - L1MEc LINE L1 -5177 1207 815 1009 192 10 5 chr1 133644357 133644560 -109019793 + AluJo SINE Alu 85 288 -24 1521 99 9 9 chr1 133644688 133644899 -109019454 - L1PA6 LINE L1 -35 6119 5909 858 273 107 37 chr1 133645051 133645858 -109018495 + L1ME2 LINE L1 5007 5891 -273 2207 50 3 75 chr1 133645858 133646176 -109018177 + AluY SINE Alu 1 295 -16 858 273 107 37 chr1 133646176 133646211 -109018142 + L1ME2 LINE L1 5891 5922 -242 1673 164 10 0 chr1 133647539 133647843 -109016510 + AluSg SINE Alu 1 307 -3 465 279 7 14 chr1 133648016 133648163 -109016190 + MIR SINE MIR 96 241 -21 375 189 42 42 chr1 133649166 133649261 -109015092 - L1MB5 LINE L1 -9 6165 6071 1028 201 5 5 chr1 133651896 133652100 -109012253 + AluJb SINE Alu 1 204 -108 2180 70 0 36 chr1 133652186 133652488 -109011865 + AluY SINE Alu 1 291 -20 1815 144 6 6 chr1 133652498 133652810 -109011543 + AluSx SINE Alu 1 312 0 1739 143 0 0 chr1 133653889 133654162 -109010191 + AluSg SINE Alu 1 273 -37 218 109 43 0 chr1 133654164 133654210 -109010143 + A-rich Low_complexity Low_complexity 1 48 0 489 272 7 14 chr1 133654360 133654507 -109009846 + MIR SINE MIR 96 241 -21 404 242 0 0 chr1 133655454 133655549 -109008804 - L1MB5 LINE L1 -9 6165 6071 1757 149 0 0 chr1 133658652 133658927 -109005426 - AluSx SINE Alu 0 312 38 16512 80 5 37 chr1 133659645 133661032 -109003321 - L1P LINE L1 -2920 3226 1795 5478 43 9 0 chr1 133661032 133661684 -109002669 + L1PA4 LINE L1 5494 6151 -4 204 40 0 0 chr1 133661684 133661709 -109002644 + (TA)n Simple_repeat Simple_repeat 1 25 0 16512 80 5 37 chr1 133661709 133662751 -109001602 - L1P LINE L1 -4349 1797 875 429 36 0 0 chr1 133664972 133665027 -108999326 + (TG)n Simple_repeat Simple_repeat 2 56 0 254 150 25 38 chr1 133666111 133666191 -108998162 + GA-rich Low_complexity Low_complexity 2 80 0 246 143 0 0 chr1 133666592 133666641 -108997712 + (TC)n Simple_repeat Simple_repeat 1 49 0 243 347 11 34 chr1 133667792 133667968 -108996385 + L1MC4 LINE L1 7460 7631 -411 573 308 50 46 chr1 133667979 133668418 -108995935 - L1MC4 LINE L1 -413 7629 7189 255 93 0 0 chr1 133668780 133668823 -108995530 + (TG)n Simple_repeat Simple_repeat 1 43 0 254 188 72 0 chr1 133670065 133670134 -108994219 - MLT2D LTR ERVL -76 444 371 627 281 21 10 chr1 133670159 133670351 -108994002 - MLT2D LTR ERVL -220 194 1 882 259 43 40 chr1 133670351 133670749 -108993604 - L1M4 LINE L1 -889 5257 4859 310 243 227 44 chr1 133671011 133671057 -108993296 + L1MEc LINE L1 754 790 -5606 1506 141 0 28 chr1 133671057 133671312 -108993041 + AluSq SINE Alu 58 305 -8 310 243 227 44 chr1 133671312 133671631 -108992722 + L1MEc LINE L1 790 1186 -5210 330 281 88 15 chr1 133671798 133672072 -108992281 + L1MEc LINE L1 1190 1483 -4732 * 1039 238 90 90 chr1 133672064 133672165 -108992188 + L1M4 LINE L1 4190 4289 -1857 378 42 0 0 chr1 133672165 133672213 -108992140 + (CA)n Simple_repeat Simple_repeat 2 49 0 1039 238 90 90 chr1 133672213 133672625 -108991728 + L1M4 LINE L1 4289 4703 -1443 1172 218 11 4 chr1 133672701 133672976 -108991377 - AluJo SINE Alu -9 303 27 2208 84 0 17 chr1 133673135 133673433 -108990920 + AluY SINE Alu 1 293 -18 228 206 29 0 chr1 133673445 133673550 -108990803 + (TA)n Simple_repeat Simple_repeat 1 108 0 293 268 126 16 chr1 133674481 133674608 -108989745 + MIR SINE MIR 106 246 -16 307 347 62 14 chr1 133674681 133674969 -108989384 - L1ME LINE L1 -330 5791 5490 279 251 218 0 chr1 133675256 133675467 -108988886 - HAL1 LINE L1 -146 2361 2105 234 325 12 0 chr1 133676712 133676792 -108987561 + CT-rich Low_complexity Low_complexity 3 83 0 497 125 0 0 chr1 133677694 133677766 -108986587 - tRNA-Gln-CAG tRNA tRNA -3 72 1 2133 163 30 0 chr1 133678552 133678913 -108985440 - LOR1b LTR ERV1 -2 459 88 483 145 13 0 chr1 133678918 133678994 -108985359 + AluJb SINE Alu 57 133 -179 12924 147 17 32 chr1 133679011 133681115 -108983238 + L1P LINE L1 11 2082 -4064 2368 74 0 13 chr1 133681115 133681424 -108982929 + AluY SINE Alu 1 305 -6 12924 147 17 32 chr1 133681424 133681559 -108982794 + L1P LINE L1 2082 2217 -3929 42540 65 1 1 chr1 133681568 133687695 -108976658 + L1PA6 LINE L1 11 6138 -16 3723 253 66 34 chr1 133687709 133689129 -108975224 - L1M1 LINE L1 -4984 2581 16 381 272 92 40 chr1 133689336 133689509 -108974844 + MER5A DNA MER1_type 7 188 -1 437 250 23 15 chr1 133691230 133691362 -108972991 - MIR3 SINE MIR -32 176 44 194 377 54 8 chr1 133696780 133696910 -108967443 - MIR SINE MIR -6 256 121 186 377 54 8 chr1 133697752 133697882 -108966471 - MIR SINE MIR -6 256 121 184 381 58 0 chr1 133698414 133698553 -108965800 + MIR SINE MIR 20 166 -96 558 283 100 35 chr1 133698645 133698875 -108965478 - MIR SINE MIR -15 247 3 327 227 109 27 chr1 133699694 133699721 -108964632 + L1MC4 LINE L1 6585 6608 -1434 222 37 0 0 chr1 133699721 133699748 -108964605 + (TC)n Simple_repeat Simple_repeat 2 28 0 327 227 109 27 chr1 133699748 133699830 -108964523 + L1MC4 LINE L1 6608 6703 -1339 256 169 0 52 chr1 133699842 133699919 -108964434 - LOR1-int LTR ERV1 -7194 926 854 232 279 47 0 chr1 133699920 133700006 -108964347 - L1MC4 LINE L1 -1339 6703 6614 316 238 0 32 chr1 133700028 133700091 -108964262 - L1MC4 LINE L1 -1340 6702 6642 999 241 80 13 chr1 133700151 133700462 -108963891 - MER46C DNA MER2_type -5 333 2 672 335 118 21 chr1 133701131 133701657 -108962696 - L3 LINE CR1 -234 1343 767 302 246 22 87 chr1 133702723 133702861 -108961492 - MIR3 SINE MIR -42 166 38 543 368 96 3 chr1 133703669 133704001 -108960352 - L3 LINE CR1 -1211 366 4 22 0 0 0 chr1 133704133 133704155 -108960198 + AT_rich Low_complexity Low_complexity 1 22 0 511 299 49 18 chr1 133708301 133708465 -108955888 - MER5B DNA MER1_type -3 175 7 330 214 117 22 chr1 133709370 133709505 -108954848 + MIR SINE MIR 20 130 -78 1949 157 0 0 chr1 133709522 133709827 -108954526 + AluJb SINE Alu 1 305 -7 525 229 9 0 chr1 133714288 133714393 -108949960 + MER5C DNA MER1_type 1 106 -218 298 111 0 148 chr1 133714473 133714554 -108949799 + MER5C DNA MER1_type 255 323 -1 2287 119 0 6 chr1 133716607 133716918 -108947435 + AluSx SINE Alu 1 309 -3 182 298 186 37 chr1 133717086 133717274 -108947079 - L2 LINE L2 -768 2546 2331 698 176 16 43 chr1 133717920 133718108 -108946245 + MER53 DNA DNA 4 186 -3 350 195 24 130 chr1 133718401 133718524 -108945829 + MIR SINE MIR 121 230 -32 29 0 0 0 chr1 133718532 133718561 -108945792 + AT_rich Low_complexity Low_complexity 1 29 0 205 333 99 57 chr1 133718651 133718792 -108945561 + MIR3 SINE MIR 23 169 -39 622 243 14 75 chr1 133719176 133719390 -108944963 + MIR SINE MIR 33 233 -29 221 368 40 0 chr1 133719586 133719662 -108944691 - MIR3 SINE MIR -22 186 108 519 264 204 18 chr1 133719833 133720053 -108944300 + MIR SINE MIR 2 262 0 621 265 57 24 chr1 133721102 133721314 -108943039 + MIR SINE MIR 24 240 -22 2396 50 7 7 chr1 133721318 133721620 -108942733 + AluY SINE Alu 4 305 -6 2232 105 0 0 chr1 133721851 133722147 -108942206 + AluSx SINE Alu 1 296 -16 253 192 0 0 chr1 133722147 133722199 -108942154 + Alu SINE Alu 244 295 -6 1978 121 4 0 chr1 133722203 133722483 -108941870 + AluY SINE Alu 1 281 -30 1635 245 71 83 chr1 133722588 133722683 -108941670 - L1MC4a LINE L1 -332 5789 6660 1553 88 171 12 chr1 133722683 133722934 -108941419 - AluSc SINE Alu -8 291 1 1635 245 71 83 chr1 133722934 133723927 -108940426 - L1MC4a LINE L1 540 6661 5658 2204 90 0 24 chr1 133724386 133724676 -108939677 + AluSq SINE Alu 1 283 -30 210 143 0 0 chr1 133724680 133724715 -108939638 + (TAA)n Simple_repeat Simple_repeat 3 37 0 337 340 68 39 chr1 133724820 133725039 -108939314 - MIR SINE MIR -4 258 36 468 198 74 158 chr1 133725831 133726033 -108938320 + MIR SINE MIR 1 185 -77 * 958 296 123 15 chr1 133726030 133726486 -108937867 - L2 LINE L2 0 3313 2809 190 322 85 17 chr1 133726454 133726572 -108937781 + MIR SINE MIR 136 261 -1 * 2321 87 7 0 chr1 133726577 133726865 -108937488 - AluSg SINE Alu -20 290 1 594 196 26 52 chr1 133726953 133727147 -108937206 - L1MC5 LINE L1 -659 7302 7114 825 307 38 0 chr1 133727459 133727697 -108936656 - MIR SINE MIR -13 249 3 196 374 22 22 chr1 133728702 133728841 -108935512 + MIR3 SINE MIR 33 171 -37 896 201 34 38 chr1 133729050 133729259 -108935094 - MER3 DNA MER1_type -1 208 1 716 186 0 16 chr1 133732479 133732608 -108931745 + FLAM_A SINE Alu 3 129 -4 3995 159 57 18 chr1 133732685 133733553 -108930800 - L1MA7 LINE L1 -2 6289 5389 452 104 0 26 chr1 133733944 133734060 -108930293 + L1PA3 LINE L1 6078 6191 0 237 274 96 0 chr1 133734917 133734990 -108929363 + L3 LINE CR1 619 698 -879 2276 84 0 32 chr1 133736884 133737195 -108927158 - AluY SINE Alu -10 301 1 395 275 42 25 chr1 133737527 133737647 -108926706 - MIR3 SINE MIR -17 191 70 193 162 54 0 chr1 133738384 133738421 -108925932 - MER5A DNA MER1_type 0 189 151 2399 94 3 0 chr1 133738423 133738732 -108925621 + AluSx SINE Alu 1 310 -2 183 326 132 39 chr1 133738742 133738871 -108925482 + MER5B DNA MER1_type 29 169 -9 * 352 300 64 21 chr1 133738866 133739006 -108925347 - MIR SINE MIR -17 245 100 511 252 84 7 chr1 133739115 133739258 -108925095 - L2 LINE L2 -1 3271 3118 428 307 42 12 chr1 133739480 133739646 -108924707 + MIR3 SINE MIR 16 186 -22 180 382 122 15 chr1 133740362 133740493 -108923860 - L2 LINE L2 -13 3259 3115 257 250 40 50 chr1 133740761 133740861 -108923492 - L2 LINE L2 -15 3257 3159 469 231 58 0 chr1 133741279 133741400 -108922953 + MER3 DNA MER1_type 82 209 0 231 222 0 0 chr1 133741361 133741406 -108922947 - MER3 DNA MER1_type -123 86 42 * 577 255 190 15 chr1 133742282 133742482 -108921871 + MIR SINE MIR 2 236 -26 428 274 63 51 chr1 133742757 133742932 -108921421 + MIR SINE MIR 50 226 -36 200 173 39 0 chr1 133744433 133744485 -108919868 + CT-rich Low_complexity Low_complexity 3 56 0 309 304 78 0 chr1 133745646 133745761 -108918592 - L2 LINE L2 0 3272 3149 282 321 73 37 chr1 133745778 133745887 -108918466 + MIR3 SINE MIR 74 186 -22 991 294 128 33 chr1 133746225 133746625 -108917728 + L2 LINE L2 2458 2819 -494 1464 132 36 66 chr1 133746625 133746958 -108917395 + MER33 DNA MER1_type 1 323 -1 991 294 128 33 chr1 133746958 133747334 -108917019 + L2 LINE L2 2819 3301 -12 182 308 15 46 chr1 133747337 133747402 -108916951 + L2 LINE L2 3194 3256 -16 24 0 0 0 chr1 133747902 133747926 -108916427 + AT_rich Low_complexity Low_complexity 1 24 0 1381 175 11 42 chr1 133747929 133748284 -108916069 - L1MC4 LINE L1 0 8042 7699 2003 111 3 10 chr1 133749109 133749398 -108914955 + AluSg SINE Alu 1 287 -23 468 355 52 62 chr1 133750841 133750874 -108913479 - L2 LINE L2 -16 3256 3224 1466 160 94 31 chr1 133750874 133750983 -108913370 + MER44D DNA MER2_type 1 102 -2389 1814 91 16 16 chr1 133750983 133751235 -108913118 - AluY SINE Alu -19 292 41 1466 160 94 31 chr1 133751235 133751444 -108912909 + MER44D DNA MER2_type 102 609 0 468 355 52 62 chr1 133751444 133751734 -108912619 - L2 LINE L2 -48 3224 2936 26 30 0 0 chr1 133751746 133751779 -108912574 + AT_rich Low_complexity Low_complexity 1 33 0 2573 45 0 16 chr1 133751782 133752141 -108912212 - AluY SINE Alu 0 354 1 2368 93 6 6 chr1 133752178 133752491 -108911862 - AluSp SINE Alu 0 313 1 2262 100 0 0 chr1 133752698 133752989 -108911364 + AluSg1 SINE Alu 1 291 -18 265 299 15 0 chr1 133753979 133754046 -108910307 - L2 LINE L2 -8 3305 3238 318 371 47 35 chr1 133754176 133754408 -108909945 + L2 LINE L2 2862 3096 -176 793 244 54 23 chr1 133756229 133756450 -108907903 - MIR SINE MIR -1 261 34 263 327 65 9 chr1 133756717 133756824 -108907529 - L2 LINE L2 -4 3268 3156 777 149 0 8 chr1 133757287 133757408 -108906945 - FLAM_C SINE Alu -13 120 1 2160 123 7 0 chr1 133757787 133758088 -108906265 - AluSx SINE Alu -9 303 1 612 235 27 11 chr1 133758595 133758778 -108905575 - MER5A DNA MER1_type -3 186 1 672 246 124 105 chr1 133759304 133759525 -108904828 - L2 LINE L2 0 3313 3081 1376 125 85 0 chr1 133759525 133759773 -108904580 - L1MA9 LINE L1 0 6312 6044 672 246 124 105 chr1 133759773 133759913 -108904440 - L2 LINE L2 -232 3081 2945 1641 233 63 122 chr1 133761081 133761261 -108903092 - L1MC4a LINE L1 -332 5789 5600 462 68 0 0 chr1 133761261 133761320 -108903033 - AluY SINE Alu -18 294 236 1488 62 10 10 chr1 133761320 133761513 -108902840 - AluY SINE Alu -118 193 1 1641 233 63 122 chr1 133761513 133762506 -108901847 - L1MC4a LINE L1 588 6709 5658 2165 93 0 24 chr1 133762965 133763255 -108901098 + AluSq SINE Alu 1 283 -30 207 0 0 0 chr1 133763259 133763282 -108901071 + (TAA)n Simple_repeat Simple_repeat 3 25 0 337 340 68 39 chr1 133763387 133763606 -108900747 - MIR SINE MIR -4 258 36 438 208 74 158 chr1 133764397 133764599 -108899754 + MIR SINE MIR 1 185 -77 * 968 294 123 15 chr1 133764596 133765052 -108899301 - L2 LINE L2 0 3313 2809 190 322 85 17 chr1 133765020 133765138 -108899215 + MIR SINE MIR 136 261 -1 * 2323 87 7 0 chr1 133765143 133765431 -108898922 - AluSg SINE Alu -20 290 1 675 196 26 52 chr1 133765519 133765713 -108898640 - L1MC5 LINE L1 -659 7302 7114 843 155 0 31 chr1 133766552 133766681 -108897672 - AluSq/x SINE Alu -179 133 9 1019 148 0 0 chr1 133766682 133766831 -108897522 - FRAM SINE Alu -28 148 1 275 299 34 79 chr1 133767014 133767305 -108897048 + L2 LINE L2 1589 1866 -1448 322 227 0 0 chr1 133767428 133767494 -108896859 + L2 LINE L2 3206 3271 -1 408 300 64 0 chr1 133768106 133768246 -108896107 + MIR SINE MIR 111 259 -3 1438 105 0 0 chr1 133768298 133768488 -108895865 + AluSg/x SINE Alu 106 295 -15 209 128 26 0 chr1 133768704 133768743 -108895610 + T-rich Low_complexity Low_complexity 2 41 0 804 108 0 0 chr1 133774195 133774297 -108890056 + AluSp/q SINE Alu 197 298 -15 839 164 8 15 chr1 133775868 133776002 -108888351 + FLAM_A SINE Alu 1 133 0 801 307 38 0 chr1 133776393 133776631 -108887722 - MIR SINE MIR -13 249 3 198 374 22 22 chr1 133778632 133778771 -108885582 + MIR3 SINE MIR 33 171 -37 993 201 34 38 chr1 133778980 133779189 -108885164 - MER3 DNA MER1_type -1 208 1 766 186 0 16 chr1 133782408 133782537 -108881816 + FLAM_A SINE Alu 3 129 -4 4396 151 58 28 chr1 133782614 133783488 -108880865 - L1MA7 LINE L1 -2 6289 5389 294 27 81 0 chr1 133783874 133783911 -108880442 - L1PA3 LINE L1 -57 6098 6059 * 481 113 0 25 chr1 133783879 133784021 -108880332 + L1PA3 LINE L1 6078 6217 0 235 274 96 0 chr1 133784850 133784923 -108879430 + L3 LINE CR1 619 698 -879 2329 74 0 32 chr1 133786817 133787129 -108877224 - AluY SINE Alu -9 302 1 374 269 37 28 chr1 133787461 133787569 -108876784 - MIR3 SINE MIR -17 191 83 194 162 54 0 chr1 133788317 133788354 -108875999 - MER5A DNA MER1_type 0 189 151 2331 104 3 0 chr1 133788356 133788663 -108875690 + AluSx SINE Alu 1 308 -4 344 300 64 21 chr1 133788791 133788931 -108875422 - MIR SINE MIR -17 245 100 489 259 84 7 chr1 133789040 133789183 -108875170 - L2 LINE L2 -1 3271 3118 422 307 42 12 chr1 133789405 133789571 -108874782 + MIR3 SINE MIR 16 186 -22 255 260 40 50 chr1 133790686 133790786 -108873567 - L2 LINE L2 -15 3257 3159 530 236 57 0 chr1 133791202 133791325 -108873028 + MER3 DNA MER1_type 80 209 0 249 245 0 0 chr1 133791282 133791331 -108873022 - MER3 DNA MER1_type -119 90 42 * 564 239 199 30 chr1 133792207 133792408 -108871945 + MIR SINE MIR 2 236 -26 423 274 63 51 chr1 133792683 133792858 -108871495 + MIR SINE MIR 50 226 -36 714 203 161 46 chr1 133793761 133793929 -108870424 + MIR SINE MIR 4 204 -58 2283 110 0 0 chr1 133793929 133794230 -108870123 + AluSx SINE Alu 1 301 -11 714 203 161 46 chr1 133794230 133794278 -108870075 + MIR SINE MIR 204 245 -17 476 191 119 16 chr1 133794344 133794470 -108869883 - MLT1H1 LTR MaLR 0 555 404 2107 114 7 10 chr1 133794789 133795079 -108869274 - AluSg SINE Alu -21 289 1 283 111 0 148 chr1 133797132 133797213 -108867140 - MER5C DNA MER1_type -1 323 255 504 229 9 0 chr1 133797293 133797398 -108866955 - MER5C DNA MER1_type -218 106 1 2094 153 0 0 chr1 133801859 133802166 -108862187 - AluJb SINE Alu -5 307 1 331 215 117 23 chr1 133802183 133802315 -108862038 - MIR SINE MIR -78 130 23 500 299 49 18 chr1 133803223 133803387 -108860966 + MER5B DNA MER1_type 7 175 -3 22 0 0 0 chr1 133807533 133807555 -108856798 + AT_rich Low_complexity Low_complexity 1 22 0 509 362 97 3 chr1 133807691 133808020 -108856333 + L3 LINE CR1 7 366 -1211 309 244 32 96 chr1 133808809 133808965 -108855388 + MIR3 SINE MIR 21 166 -42 642 329 122 25 chr1 133810031 133810557 -108853796 + L3 LINE CR1 767 1343 -234 1071 226 89 19 chr1 133811226 133811540 -108852813 + MER46C DNA MER2_type 2 337 -1 410 202 0 10 chr1 133811607 133811706 -108852647 + (TA)n Simple_repeat Simple_repeat 2 99 0 234 314 47 0 chr1 133811708 133811794 -108852559 + L1MC4 LINE L1 6614 6703 -1339 253 222 37 0 chr1 133811794 133811848 -108852505 + (TATATG)n Simple_repeat Simple_repeat 6 61 0 262 302 47 0 chr1 133811848 133811934 -108852419 + L1MC4 LINE L1 6614 6703 -1339 198 242 11 21 chr1 133811944 133812039 -108852314 + (TA)n Simple_repeat Simple_repeat 2 95 0 258 32 0 0 chr1 133812039 133812070 -108852283 + (GA)n Simple_repeat Simple_repeat 2 32 0 524 291 100 35 chr1 133812916 133813146 -108851207 + MIR SINE MIR 3 247 -15 186 389 58 0 chr1 133813238 133813377 -108850976 - MIR SINE MIR -96 166 20 443 242 23 15 chr1 133819450 133819582 -108844771 + MIR3 SINE MIR 44 176 -32 381 279 89 39 chr1 133821303 133821482 -108842871 - MER5A DNA MER1_type -1 188 1 21 0 0 0 chr1 133821558 133821579 -108842774 + AT_rich Low_complexity Low_complexity 1 21 0 3769 253 61 34 chr1 133821682 133823108 -108841245 + L1M1 LINE L1 16 2581 -4984 42513 65 2 1 chr1 133823122 133829244 -108835109 - L1PA6 LINE L1 -16 6138 11 12771 151 17 32 chr1 133829253 133829388 -108834965 - L1P LINE L1 -3929 2217 2082 2263 83 0 13 chr1 133829388 133829690 -108834663 - AluY SINE Alu -13 298 1 12771 151 17 32 chr1 133829690 133831793 -108832560 - L1P LINE L1 -4064 2082 11 483 145 13 0 chr1 133831814 133831890 -108832463 - AluJb SINE Alu -179 133 57 2085 172 30 0 chr1 133831895 133832256 -108832097 + LOR1b LTR ERV1 88 459 -2 497 125 0 0 chr1 133833042 133833114 -108831239 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 271 0 29 chr1 133834026 133834096 -108830257 + GA-rich Low_complexity Low_complexity 2 69 0 279 251 218 0 chr1 133835340 133835551 -108828802 + HAL1 LINE L1 2105 2361 -146 280 347 62 14 chr1 133835843 133836131 -108828222 + L1ME LINE L1 5490 5791 -330 320 252 126 16 chr1 133836204 133836331 -108828022 - MIR SINE MIR -16 246 106 227 222 0 0 chr1 133837252 133837315 -108827038 + L1MA9 LINE L1 6214 6276 -36 31 58 0 0 chr1 133837324 133837376 -108826977 + AT_rich Low_complexity Low_complexity 1 52 0 2199 84 0 17 chr1 133837379 133837675 -108826678 - AluY SINE Alu -20 291 1 1188 214 11 4 chr1 133837834 133838109 -108826244 + AluJo SINE Alu 27 303 -9 1075 252 111 36 chr1 133838185 133838598 -108825755 - L1 LINE L1 -1443 4703 4260 308 138 15 0 chr1 133838598 133838663 -108825690 + (TG)n Simple_repeat Simple_repeat 2 67 0 256 235 0 0 chr1 133838681 133838732 -108825621 - L1 LINE L1 -1901 4245 4195 * 336 281 146 30 chr1 133838729 133839489 -108824864 - L1MEc LINE L1 -4732 1492 793 1586 134 0 27 chr1 133839489 133839751 -108824602 - AluSq SINE Alu -1 312 58 336 281 146 30 chr1 133839751 133839797 -108824556 - L1MEc LINE L1 -5431 793 754 892 259 37 45 chr1 133840059 133840461 -108823892 + L1M4 LINE L1 4859 5257 -889 690 289 10 0 chr1 133840461 133840662 -108823691 + MLT2B1 LTR ERVL 1 203 -317 244 188 72 0 chr1 133840678 133840747 -108823606 + MLT2B1 LTR ERVL 367 440 -75 348 88 0 0 chr1 133841989 133842046 -108822307 + (CA)n Simple_repeat Simple_repeat 1 57 0 566 317 46 41 chr1 133842408 133842847 -108821506 + L1MC4 LINE L1 7189 7629 -413 364 341 23 45 chr1 133842858 133843034 -108821319 - L1MC4 LINE L1 -411 7631 7460 228 170 0 0 chr1 133844191 133844244 -108820109 + GA-rich Low_complexity Low_complexity 1 53 0 266 163 38 12 chr1 133844641 133844721 -108819632 + CT-rich Low_complexity Low_complexity 2 83 0 369 0 0 0 chr1 133845813 133845854 -108818499 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr1 133845853 133845874 -108818479 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 221 146 21 0 chr1 133847373 133847421 -108816932 + GA-rich Low_complexity Low_complexity 1 49 0 378 57 0 0 chr1 133848924 133848977 -108815376 + (CA)n Simple_repeat Simple_repeat 2 54 0 16310 81 5 44 chr1 133851195 133852255 -108812098 + L1P LINE L1 875 1975 -4171 5491 43 9 0 chr1 133852255 133852909 -108811444 - L1PA4 LINE L1 -2 6153 5494 16310 81 5 44 chr1 133852909 133854296 -108810057 + L1P LINE L1 1975 3226 -2920 1680 164 0 0 chr1 133855013 133855282 -108809071 + AluSx SINE Alu 38 306 -6 404 242 0 0 chr1 133858380 133858475 -108805878 + L1MB5 LINE L1 6071 6165 -9 451 286 7 14 chr1 133859422 133859569 -108804784 - MIR SINE MIR -21 241 96 251 102 0 20 chr1 133859722 133859771 -108804582 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1775 136 0 0 chr1 133859773 133860046 -108804307 - AluSg SINE Alu -37 273 1 1769 156 7 0 chr1 133861125 133861432 -108802921 - AluSx SINE Alu -3 309 1 2241 79 0 16 chr1 133861438 133861743 -108802610 - AluY SINE Alu -11 300 1 935 221 5 5 chr1 133861826 133862030 -108802323 - AluJb SINE Alu -108 204 1 334 221 42 42 chr1 133864668 133864763 -108799590 + L1MB5 LINE L1 6071 6165 -9 410 279 7 14 chr1 133865734 133865881 -108798472 - MIR SINE MIR -21 241 96 1769 166 10 0 chr1 133866046 133866353 -108798000 - AluSg SINE Alu 0 310 1 905 279 125 30 chr1 133867683 133867718 -108796635 - L1ME2 LINE L1 -242 5922 5892 2072 73 25 98 chr1 133867718 133868045 -108796308 - AluYb8 SINE Alu -15 303 1 905 279 125 30 chr1 133868045 133868977 -108795376 - L1ME2 LINE L1 -272 5892 4862 1542 101 10 0 chr1 133869006 133869215 -108795138 + L1PA6 LINE L1 5909 6119 -35 593 175 42 0 chr1 133869215 133869381 -108794972 + (TA)n Simple_repeat Simple_repeat 1 173 0 266 163 38 12 chr1 133869996 133870076 -108794277 + CT-rich Low_complexity Low_complexity 2 83 0 441 0 0 0 chr1 133871142 133871168 -108793185 + (CA)n Simple_repeat Simple_repeat 1 75 0 441 0 0 0 chr1 133871168 133871217 -108793136 + (CA)n Simple_repeat Simple_repeat 2 50 0 293 125 18 0 chr1 133872730 133872786 -108791567 + GA-rich Low_complexity Low_complexity 1 57 0 414 120 0 0 chr1 133874279 133874354 -108789999 + (GA)n Simple_repeat Simple_repeat 1 75 0 287 150 38 12 chr1 133874755 133874835 -108789518 + CT-rich Low_complexity Low_complexity 2 83 0 441 0 0 0 chr1 133875927 133875976 -108788377 + (CA)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chr1 133875975 133875998 -108788355 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 207 0 0 0 chr1 133877514 133877537 -108786816 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 269 154 39 13 chr1 133877945 133878023 -108786330 + CT-rich Low_complexity Low_complexity 2 81 0 390 21 0 0 chr1 133879115 133879162 -108785191 + (CA)n Simple_repeat Simple_repeat 2 48 0 221 146 21 0 chr1 133880665 133880713 -108783640 + GA-rich Low_complexity Low_complexity 1 49 0 447 35 0 0 chr1 133882216 133882273 -108782080 + (CA)n Simple_repeat Simple_repeat 2 58 0 16588 82 6 27 chr1 133884490 133885508 -108778845 + L1P LINE L1 875 1913 -4233 5436 49 1 15 chr1 133885508 133885532 -108778821 - L1PA4 LINE L1 -1 6154 6131 213 94 0 0 chr1 133885532 133885564 -108778789 + (TA)n Simple_repeat Simple_repeat 1 32 0 5436 49 1 15 chr1 133885564 133886209 -108778144 - L1PA4 LINE L1 -24 6131 5494 16588 82 6 27 chr1 133886209 133887593 -108776760 + L1P LINE L1 1913 3226 -2920 1827 152 0 0 chr1 133888311 133888580 -108775773 + AluSx SINE Alu 38 306 -6 401 242 0 0 chr1 133891678 133891773 -108772580 + L1MB5 LINE L1 6071 6165 -9 427 272 7 14 chr1 133892720 133892867 -108771486 - MIR SINE MIR -21 241 96 197 81 0 27 chr1 133893020 133893057 -108771296 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1901 132 0 0 chr1 133893059 133893332 -108771021 - AluSg SINE Alu -37 273 1 1877 157 6 6 chr1 133894407 133894719 -108769634 - AluSx SINE Alu 0 312 1 2250 83 0 33 chr1 133894729 133895030 -108769323 - AluY SINE Alu -20 291 1 1068 206 5 5 chr1 133895113 133895317 -108769036 - AluJb SINE Alu -108 204 1 347 200 42 42 chr1 133897955 133898050 -108766303 + L1MB5 LINE L1 6071 6165 -9 385 286 7 14 chr1 133899053 133899200 -108765153 - MIR SINE MIR -21 241 96 1788 166 10 0 chr1 133899369 133899676 -108764677 - AluSg SINE Alu 0 310 1 855 271 107 37 chr1 133901001 133901036 -108763317 - L1ME2 LINE L1 -242 5922 5891 2421 54 3 54 chr1 133901036 133901353 -108763000 - AluY SINE Alu -10 301 1 855 271 107 37 chr1 133901353 133902160 -108762193 - L1ME2 LINE L1 -273 5891 5007 1554 101 10 0 chr1 133902314 133902523 -108761830 + L1PA6 LINE L1 5909 6119 -35 566 182 35 6 chr1 133902549 133902719 -108761634 + (TA)n Simple_repeat Simple_repeat 1 175 0 952 277 109 10 chr1 133903534 133904018 -108760335 - L1ME2 LINE L1 -1286 4860 4329 2273 248 98 19 chr1 133904036 133904472 -108759881 - L1ME1 LINE L1 -5 6161 5761 4906 81 12 20 chr1 133904472 133905136 -108759217 + PABL_A LTR ERV1 2 660 0 2273 248 98 19 chr1 133905136 133905503 -108758850 - L1ME1 LINE L1 -405 5761 5294 227 179 0 60 chr1 133905511 133905578 -108758775 + L1MC4 LINE L1 6647 6709 -1333 234 0 0 0 chr1 133905613 133905639 -108758714 + (CA)n Simple_repeat Simple_repeat 2 27 0 2452 267 26 39 chr1 133905672 133906112 -108758241 - L1ME1 LINE L1 -1282 4864 4419 2260 117 3 0 chr1 133906112 133906419 -108757934 - AluY SINE Alu -3 308 1 2452 267 26 39 chr1 133906419 133906994 -108757359 - L1ME1 LINE L1 -1727 4419 3863 21 0 0 0 chr1 133907002 133907023 -108757330 + AT_rich Low_complexity Low_complexity 1 21 0 507 48 0 0 chr1 133907026 133907089 -108757264 + AluY SINE Alu 2 64 -246 323 370 27 9 chr1 133907348 133907567 -108756786 - HERV16 LTR ERVL -3546 1450 1228 555 240 105 51 chr1 133907605 133907869 -108756484 - LTR33 LTR ERVL -248 275 29 222 229 66 16 chr1 133908470 133908531 -108755822 + MIR3 SINE MIR 138 201 -7 1681 183 58 11 chr1 133909493 133909854 -108754499 + L1ME2 LINE L1 5524 5901 -263 663 241 32 113 chr1 133909897 133910242 -108754111 + MLT1E2-int LTR MaLR 957 1273 -98 805 262 140 32 chr1 133910475 133910931 -108753422 + MLT1E2 LTR MaLR 111 654 0 6833 116 5 9 chr1 133911168 133912141 -108752212 - LTR5 LTR ERVK 0 969 1 1881 159 3 3 chr1 133912152 133912448 -108751905 + AluSq SINE Alu 9 304 -9 295 278 49 37 chr1 133912775 133912937 -108751416 + L1MB8 LINE L1 5990 6153 -25 930 278 86 16 chr1 133912945 133913330 -108751023 + L1MCa LINE L1 19 430 -5996 2974 206 45 13 chr1 133913330 133914761 -108749592 + L1MC2 LINE L1 4712 6272 -72 3298 187 27 3 chr1 133914171 133914828 -108749525 + L1MC2 LINE L1 5661 6339 -5 801 147 6 12 chr1 133915310 133915473 -108748880 + GA-rich Low_complexity Low_complexity 3 164 0 200 163 0 20 chr1 133915496 133915545 -108748808 + GA-rich Low_complexity Low_complexity 1 48 0 210 382 55 0 chr1 133916027 133916137 -108748216 + L2 LINE L2 3198 3313 0 238 229 0 0 chr1 133916619 133916667 -108747686 - L2 LINE L2 -1 3312 3265 512 277 43 0 chr1 133917020 133917161 -108747192 - L2 LINE L2 -797 2517 2371 898 167 22 22 chr1 133917214 133917394 -108746959 + AluJo SINE Alu 84 263 -49 384 257 37 9 chr1 133917609 133917718 -108746635 - MLT1I LTR MaLR -17 392 281 440 297 36 0 chr1 133917799 133917910 -108746443 - L2 LINE L2 0 3272 3158 1630 184 10 0 chr1 133918045 133918339 -108746014 + AluJb SINE Alu 1 297 -15 354 148 0 0 chr1 133918781 133918835 -108745518 - FLAM SINE Alu -2 131 78 762 240 156 40 chr1 133918876 133918992 -108745361 + L1ME LINE L1 4843 4944 -1220 1801 154 3 3 chr1 133918992 133919291 -108745062 + AluJb SINE Alu 1 299 -13 762 240 156 40 chr1 133919291 133919445 -108744908 + L1ME LINE L1 4944 5079 -1085 1736 167 3 7 chr1 133919445 133919744 -108744609 + AluJb SINE Alu 1 298 -14 762 240 156 40 chr1 133919744 133920202 -108744151 + L1ME LINE L1 5079 5654 -510 284 138 239 110 chr1 133920203 133920264 -108744089 + L1ME3A LINE L1 6037 6089 -81 1837 158 3 0 chr1 133920264 133920568 -108743785 - AluJb SINE Alu -5 307 3 284 138 239 110 chr1 133920568 133920615 -108743738 + L1ME3A LINE L1 6089 6159 -11 1822 107 38 0 chr1 133922530 133922844 -108741509 - AluSx SINE Alu 0 334 11 320 306 0 12 chr1 133923476 133923561 -108740792 + L1M4 LINE L1 3028 3111 -3035 1746 118 0 8 chr1 133923561 133923824 -108740529 + AluSx SINE Alu 1 261 -51 569 225 5 43 chr1 133925019 133925104 -108739249 + L1M4 LINE L1 3028 3115 -3031 1963 114 0 13 chr1 133925104 133925410 -108738943 + AluSx SINE Alu 1 302 -10 569 225 5 43 chr1 133925410 133925533 -108738820 + L1M4 LINE L1 3115 3228 -2918 883 239 18 77 chr1 133925541 133925749 -108738604 + L1M4 LINE L1 3375 3559 -2587 2290 77 0 0 chr1 133925749 133926046 -108738307 - AluY SINE Alu -14 297 1 883 239 18 77 chr1 133926046 133926163 -108738190 + L1M4 LINE L1 3559 3681 -2465 283 148 19 0 chr1 133926165 133926219 -108738134 + L1M4 LINE L1 3901 3955 -2191 2125 107 7 0 chr1 133926230 133926538 -108737815 + AluSx SINE Alu 1 310 -2 655 257 55 9 chr1 133926588 133926806 -108737547 + L1M4 LINE L1 3964 4191 -1955 * 8417 217 51 76 chr1 133926792 133929647 -108734706 + L1MDa LINE L1 29 2848 -3873 438 264 0 19 chr1 133930229 133930384 -108733969 - U1 snRNA snRNA -10 155 4 180 0 0 0 chr1 133931097 133931117 -108733236 + (TC)n Simple_repeat Simple_repeat 1 20 0 2093 75 0 4 chr1 133931117 133931395 -108732958 - AluSc SINE Alu -32 277 1 243 0 0 0 chr1 133931401 133931428 -108732925 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1215 253 69 41 chr1 133931619 133932402 -108731951 - L1MEc LINE L1 -4258 2138 1288 327 162 82 28 chr1 133932402 133932517 -108731836 + AluSp SINE Alu 66 133 -170 548 238 62 54 chr1 133932528 133932768 -108731585 - L1MEc LINE L1 -5114 1282 1041 381 193 0 12 chr1 133932796 133932879 -108731474 - AluS SINE Alu 0 301 220 1784 64 0 17 chr1 133933083 133933341 -108731012 + AluY SINE Alu 63 316 0 2376 74 0 3 chr1 133933700 133934012 -108730341 + AluY SINE Alu 1 311 0 2177 88 3 0 chr1 133934224 133934543 -108729810 - AluSp SINE Alu 0 320 1 285 29 0 0 chr1 133934543 133934577 -108729776 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2062 107 4 0 chr1 133934577 133934858 -108729495 - AluSg SINE Alu -28 282 1 1795 118 3 40 chr1 133934870 133935166 -108729187 + L1PA11 LINE L1 5865 6149 -25 673 220 42 18 chr1 133935364 133935532 -108728821 - AluJb SINE Alu -5 307 136 1685 156 0 0 chr1 133935534 133935810 -108728543 - AluJb SINE Alu -16 296 21 180 111 0 0 chr1 133936149 133936176 -108728177 + (TATG)n Simple_repeat Simple_repeat 2 28 0 840 233 0 0 chr1 133936574 133936724 -108727629 + FRAM SINE Alu 5 154 -12 284 342 98 31 chr1 133936983 133937369 -108726984 - MER110-int LTR ERV1 -2094 2553 2142 2083 112 10 0 chr1 133937733 133938028 -108726325 - AluSx SINE Alu -14 298 1 1185 169 4 36 chr1 133938357 133938606 -108725747 + AluJo SINE Alu 44 284 -28 1975 111 3 7 chr1 133938993 133939306 -108725047 - AluSg SINE Alu 0 310 1 766 278 137 31 chr1 133939369 133940238 -108724115 - L1ME LINE L1 -343 5823 4862 989 57 8 0 chr1 133940267 133940391 -108723962 + L1PA6 LINE L1 5909 6033 -121 306 87 0 0 chr1 133942495 133942541 -108721812 + (GGA)n Simple_repeat Simple_repeat 2 47 0 215 327 75 0 chr1 133943288 133943395 -108720958 - L2 LINE L2 -3 3310 3196 2445 103 13 46 chr1 133943536 133943924 -108720429 + THE1C LTR MaLR 1 375 0 581 333 42 15 chr1 133945205 133945611 -108718742 + L1ME4a LINE L1 5403 5819 -302 30 27 0 0 chr1 133945858 133945895 -108718458 + AT_rich Low_complexity Low_complexity 1 37 0 290 174 72 58 chr1 133946326 133946394 -108717959 - MER45B DNA AcHobo -660 380 312 232 198 126 36 chr1 133946394 133946505 -108717848 + REP3 LTR ERV 1 121 -441 353 306 60 49 chr1 133947212 133947395 -108716958 + MIR SINE MIR 53 237 -25 1158 240 80 31 chr1 133947555 133947943 -108716410 + L1ME2 LINE L1 5653 6045 -119 834 126 152 0 chr1 133948031 133948182 -108716171 + AluSg/x SINE Alu 137 310 -2 286 279 90 60 chr1 133948252 133948485 -108715868 + HAL1b LINE L1 971 1210 -138 280 307 55 18 chr1 133948526 133948689 -108715664 + HAL1b LINE L1 1180 1348 0 269 239 26 35 chr1 133948701 133948814 -108715539 + L1ME4a LINE L1 5967 6078 -43 315 290 28 35 chr1 133948925 133949070 -108715283 - L1MB8 LINE L1 -37 6141 5998 302 342 9 0 chr1 133950327 133950438 -108713915 - MIR3 SINE MIR -31 177 66 420 55 0 0 chr1 133953015 133953070 -108711283 + (GGA)n Simple_repeat Simple_repeat 2 56 0 27 0 0 0 chr1 133953432 133953459 -108710894 + GC_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr1 133953698 133953724 -108710629 + AT_rich Low_complexity Low_complexity 1 26 0 296 253 77 22 chr1 133954232 133954323 -108710030 + L2 LINE L2 3177 3272 0 4955 16 0 0 chr1 133954616 133955171 -108709182 + L1PA3 LINE L1 5597 6151 -4 262 152 379 0 chr1 133955215 133955281 -108709072 - MER31A LTR ERV1 -394 91 1 8686 174 49 48 chr1 133955287 133956112 -108708241 - MER31A-int LTR ERV1 -26 5853 5030 2001 103 3 7 chr1 133956112 133956402 -108707951 - AluSg SINE Alu -12 298 10 8686 174 49 48 chr1 133956402 133958088 -108706265 - MER31A-int LTR ERV1 -849 5030 3077 1352 181 134 97 chr1 133958149 133958583 -108705770 - MER31A-int LTR ERV1 -3408 1528 1063 1806 117 60 0 chr1 133958583 133958866 -108705487 + AluSx SINE Alu 1 300 -12 1352 181 134 97 chr1 133958866 133959050 -108705303 - MER31A-int LTR ERV1 -3873 1063 887 680 219 19 71 chr1 133959206 133959416 -108704937 - MER31A-int LTR ERV1 -4537 399 201 * 766 199 61 131 chr1 133959383 133959680 -108704673 - MER31A-int LTR ERV1 -4646 290 15 2708 143 54 4 chr1 133959716 133960178 -108704175 - MER31A LTR ERV1 0 485 1 2140 98 0 7 chr1 133960435 133960732 -108703621 - AluSq SINE Alu -18 295 1 2344 60 3 3 chr1 133961107 133961408 -108702945 + AluY SINE Alu 1 301 -10 283 315 56 52 chr1 133961918 133962188 -108702165 - HAL1 LINE L1 -860 1647 1377 22 0 0 0 chr1 133962388 133962410 -108701943 + AT_rich Low_complexity Low_complexity 1 22 0 6896 69 10 2 chr1 133962544 133963802 -108700551 - L1PA6 LINE L1 -3 6151 4890 1333 208 13 0 chr1 133964139 133964375 -108699978 - MER8 DNA MER2_type 0 239 1 318 250 22 0 chr1 133964402 133964494 -108699859 + L1MC4 LINE L1 6614 6707 -1335 1767 193 5 42 chr1 133964494 133964899 -108699454 - MLT1B LTR MaLR 0 390 1 27 62 0 0 chr1 133964928 133964976 -108699377 + AT_rich Low_complexity Low_complexity 1 48 0 2010 137 20 0 chr1 133965598 133965891 -108698462 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 133965982 133966004 -108698349 + AT_rich Low_complexity Low_complexity 1 22 0 618 290 50 32 chr1 133966185 133966406 -108697947 + MIR SINE MIR 20 244 -18 323 323 108 58 chr1 133966556 133967213 -108697140 - L2 LINE L2 -823 2491 1802 29 0 0 0 chr1 133967215 133967244 -108697109 + AT_rich Low_complexity Low_complexity 1 29 0 905 114 0 0 chr1 133967344 133967476 -108696877 - AluSg/x SINE Alu -1 309 178 191 389 54 25 chr1 133967599 133967802 -108696551 - L2 LINE L2 -2916 398 190 22 56 0 0 chr1 133967980 133968016 -108696337 + AT_rich Low_complexity Low_complexity 1 36 0 2175 111 3 0 chr1 133968112 133968400 -108695953 - AluSc SINE Alu -20 289 1 536 312 91 48 chr1 133968501 133968740 -108695613 + L1MC4a LINE L1 5349 5576 -2232 2782 134 20 7 chr1 133968740 133969196 -108695157 + L1PA16 LINE L1 5704 6165 -1 536 312 91 48 chr1 133969196 133969517 -108694836 + L1MC4a LINE L1 5576 5933 -1875 24 0 0 0 chr1 133970852 133970876 -108693477 + AT_rich Low_complexity Low_complexity 1 24 0 2232 175 3 3 chr1 133971583 133971948 -108692405 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr1 133972284 133972307 -108692046 + AT_rich Low_complexity Low_complexity 1 23 0 1307 160 0 14 chr1 133972954 133973166 -108691187 - AluJo SINE Alu -18 294 86 2248 131 0 0 chr1 133973773 133974085 -108690268 - AluSx SINE Alu 0 312 1 761 279 22 98 chr1 133974265 133974753 -108689600 - LTR67 LTR ERVL -25 532 82 316 208 42 0 chr1 133975259 133975331 -108689022 - ERVL LTR ERVL -464 5300 5226 773 191 35 29 chr1 133975394 133975714 -108688639 - L1MC2 LINE L1 -2 6342 5921 1580 133 19 0 chr1 133976442 133976698 -108687655 - L1MC2 LINE L1 -365 5979 5719 1269 122 6 0 chr1 133976707 133976914 -108687439 - AluSg/x SINE Alu 0 335 128 1165 327 87 59 chr1 133977159 133978135 -108686218 - ERVL LTR ERVL -850 4914 3904 2158 148 0 0 chr1 133978135 133978445 -108685908 - AluSx SINE Alu -2 310 1 1165 327 87 59 chr1 133978445 133978535 -108685818 - ERVL LTR ERVL -1860 3904 3818 2082 122 3 6 chr1 133979184 133979495 -108684858 + AluSg SINE Alu 1 310 0 542 50 94 6 chr1 133980173 133980332 -108684021 + (TA)n Simple_repeat Simple_repeat 1 173 0 2201 107 3 0 chr1 133980347 133980637 -108683716 - AluSp SINE Alu -22 291 1 557 167 0 0 chr1 133980886 133980988 -108683365 - AluJb SINE Alu -3 309 208 1273 119 5 5 chr1 133981462 133981647 -108682706 - AluSp SINE Alu -11 302 118 219 282 16 3 chr1 133982115 133982234 -108682119 - MER5B DNA MER1_type -10 168 9 2122 86 10 43 chr1 133982271 133982574 -108681779 + AluSq SINE Alu 1 293 -20 21 0 0 0 chr1 133983114 133983135 -108681218 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 133983459 133983482 -108680871 + AT_rich Low_complexity Low_complexity 1 23 0 549 277 135 47 chr1 133983559 133983988 -108680365 + L1ME4a LINE L1 5407 5873 -248 1227 297 100 52 chr1 133984001 133985149 -108679204 + L1MEd LINE L1 2 1204 -4915 894 306 28 28 chr1 133985166 133985708 -108678645 + L1M4 LINE L1 3447 3988 -2158 741 245 92 59 chr1 133985721 133985994 -108678359 - LTR33A LTR ERVL -24 499 218 227 246 34 85 chr1 133986005 133986123 -108678230 - LTR33A LTR ERVL -406 117 6 45 62 0 0 chr1 133986228 133986308 -108678045 + AT_rich Low_complexity Low_complexity 1 80 0 333 309 21 0 chr1 133987006 133987103 -108677250 + MER81 DNA DNA 1 99 -15 987 128 6 11 chr1 133987687 133987867 -108676486 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 245 143 0 20 chr1 133987867 133987916 -108676437 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 987 182 11 0 chr1 133987916 133988092 -108676261 - AluJo SINE Alu -1 311 134 509 219 151 8 chr1 133988128 133988247 -108676106 + MER5B DNA MER1_type 2 137 -41 2293 118 22 19 chr1 133988328 133988691 -108675662 - THE1B LTR MaLR 0 364 1 392 208 118 62 chr1 133988819 133988963 -108675390 + MER5B DNA MER1_type 22 173 -5 850 132 0 0 chr1 133990076 133990190 -108674163 - AluJo SINE Alu -183 129 16 23 0 0 0 chr1 133990273 133990296 -108674057 + AT_rich Low_complexity Low_complexity 1 23 0 760 305 89 32 chr1 133990708 133991072 -108673281 + L1ME4a LINE L1 5554 5960 -161 516 135 22 0 chr1 133991072 133991161 -108673192 - L1MA6 LINE L1 0 6300 6210 760 305 89 32 chr1 133991161 133991333 -108673020 + L1ME4a LINE L1 5960 6121 0 1880 184 32 9 chr1 133992136 133992484 -108671869 - MLT1A1 LTR MaLR 0 365 10 378 320 117 18 chr1 133992800 133993022 -108671331 - MIR SINE MIR 0 262 19 7727 49 1 1 chr1 133993578 133995320 -108669033 + L1PA5 LINE L1 4409 6150 -4 720 176 127 7 chr1 133995403 133995545 -108668808 - FAM SINE Alu -16 159 1 231 132 0 0 chr1 133995618 133995656 -108668697 + L1M LINE L1 5390 5427 -737 14355 126 31 85 chr1 133995870 133998738 -108665615 - Tigger2 DNA MER2_type -2 2716 2 1581 186 44 3 chr1 133998740 133999058 -108665295 + MER46B DNA MER2_type 23 228 -8 572 226 131 12 chr1 134001391 134001559 -108662794 + MER5A DNA MER1_type 2 189 0 2272 98 0 0 chr1 134003335 134003632 -108660721 - AluSq SINE Alu -16 297 1 2021 138 7 0 chr1 134005853 134006150 -108658203 - AluSx SINE Alu -13 299 1 22 70 0 0 chr1 134006570 134006613 -108657740 + AT_rich Low_complexity Low_complexity 1 43 0 1990 145 3 0 chr1 134006901 134007197 -108657156 - AluSx SINE Alu -15 297 1 24 0 0 0 chr1 134007207 134007231 -108657122 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr1 134009822 134009865 -108654488 + AT_rich Low_complexity Low_complexity 1 43 0 519 187 0 37 chr1 134010216 134010323 -108654030 - AluJo SINE Alu -176 136 34 369 338 16 9 chr1 134010786 134010923 -108653430 + MIR SINE MIR 4 139 -69 207 274 82 0 chr1 134011120 134011193 -108653160 - L2 LINE L2 -1 3271 3193 181 286 0 0 chr1 134012028 134012070 -108652283 + MIR3 SINE MIR 115 156 -52 1296 226 3 77 chr1 134012443 134012806 -108651547 - MLT1A2 LTR MaLR 0 374 39 344 305 8 32 chr1 134012973 134013101 -108651252 + LTR33 LTR ERVL 344 468 -53 2224 56 78 0 chr1 134013101 134013385 -108650968 + AluY SINE Alu 1 306 -5 344 305 8 32 chr1 134013385 134013402 -108650951 + LTR33 LTR ERVL 468 484 -37 927 160 0 0 chr1 134013477 134013621 -108650732 - MLT1A1 LTR MaLR 0 365 222 1485 154 22 55 chr1 134013622 134013895 -108650458 - AluJb SINE Alu -44 268 5 300 323 16 16 chr1 134014658 134014782 -108649571 + Charlie4 DNA MER1_type 1834 1957 -4 1276 65 0 24 chr1 134015201 134015370 -108648983 + U1 snRNA snRNA 1 165 0 562 131 77 195 chr1 134015799 134016020 -108648333 - AluJb SINE Alu -113 199 5 433 187 110 58 chr1 134016212 134016367 -108647986 + REP3 LTR ERV 1 163 -399 240 169 0 17 chr1 134016362 134016421 -108647932 - MER58 DNA MER1_type -101 2319 2262 * 249 271 96 30 chr1 134016893 134016925 -108647428 + L2 LINE L2 2347 2375 -939 2028 132 0 0 chr1 134016925 134017228 -108647125 - AluSx SINE Alu -9 303 1 249 271 96 30 chr1 134017228 134017361 -108646992 + L2 LINE L2 2375 2523 -791 1827 161 111 47 chr1 134017403 134017623 -108646730 + LOR1b LTR ERV1 1 205 -256 2398 57 0 10 chr1 134017623 134017937 -108646416 - AluY SINE Alu 0 311 1 1827 161 111 47 chr1 134017937 134018120 -108646233 + LOR1b LTR ERV1 205 430 -31 1953 104 4 0 chr1 134018622 134018946 -108645407 + AluSg SINE Alu 1 325 0 233 146 21 0 chr1 134019475 134019523 -108644830 + (TA)n Simple_repeat Simple_repeat 2 50 0 243 0 0 0 chr1 134019523 134019550 -108644803 + (CA)n Simple_repeat Simple_repeat 2 28 0 646 140 9 0 chr1 134019550 134019657 -108644696 - FLAM_C SINE Alu -33 110 3 23 33 0 0 chr1 134019660 134019690 -108644663 + AT_rich Low_complexity Low_complexity 1 30 0 608 283 46 5 chr1 134019799 134020018 -108644335 + L1MEc LINE L1 1566 1793 -4603 522 202 57 0 chr1 134020040 134020228 -108644125 + L1MEc LINE L1 1895 2133 -4263 2090 83 0 21 chr1 134020250 134020566 -108643787 + AluSx SINE Alu 2 311 0 259 265 59 10 chr1 134020577 134020679 -108643674 + L1ME LINE L1 5614 5720 -450 631 53 0 0 chr1 134021860 134021935 -108642418 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 951 156 0 59 chr1 134022401 134022587 -108641766 + AluSg/x SINE Alu 132 306 -4 319 306 32 107 chr1 134022599 134022815 -108641538 - L1MC/D LINE L1 -2068 5740 5541 2000 172 0 15 chr1 134022821 134023164 -108641189 - MER72 LTR ERV1 -221 501 164 2450 41 0 0 chr1 134023173 134023467 -108640886 - AluY SINE Alu -17 294 1 450 20 0 0 chr1 134023482 134023532 -108640821 - MER51D LTR ERV1 -2 655 606 291 85 0 0 chr1 134023839 134023886 -108640467 + (CA)n Simple_repeat Simple_repeat 1 47 0 566 317 46 41 chr1 134024247 134024686 -108639667 + L1MC4 LINE L1 7189 7629 -413 243 347 11 34 chr1 134024697 134024873 -108639480 - L1MC4 LINE L1 -411 7631 7460 246 143 0 0 chr1 134026029 134026078 -108638275 + (GA)n Simple_repeat Simple_repeat 1 49 0 266 163 38 12 chr1 134026479 134026559 -108637794 + CT-rich Low_complexity Low_complexity 2 83 0 225 0 0 0 chr1 134027651 134027676 -108636677 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 279 0 0 0 chr1 134027675 134027706 -108636647 + (GA)n Simple_repeat Simple_repeat 2 32 0 224 154 19 0 chr1 134029205 134029257 -108635096 + GA-rich Low_complexity Low_complexity 1 53 0 221 146 21 0 chr1 134030749 134030797 -108633556 + GA-rich Low_complexity Low_complexity 1 49 0 375 119 0 0 chr1 134032289 134032356 -108631997 + (GA)n Simple_repeat Simple_repeat 1 67 0 266 163 38 12 chr1 134032756 134032836 -108631517 + CT-rich Low_complexity Low_complexity 2 83 0 279 0 0 0 chr1 134033928 134033959 -108630394 + (CA)n Simple_repeat Simple_repeat 2 32 0 261 0 0 0 chr1 134033958 134033987 -108630366 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 224 154 19 0 chr1 134035486 134035538 -108628815 + GA-rich Low_complexity Low_complexity 1 53 0 333 0 0 0 chr1 134037035 134037072 -108627281 + (CA)n Simple_repeat Simple_repeat 2 38 0 16432 80 5 38 chr1 134039288 134040331 -108624022 + L1P LINE L1 875 1951 -4195 204 40 0 0 chr1 134040331 134040356 -108623997 + (TA)n Simple_repeat Simple_repeat 2 26 0 5509 41 9 0 chr1 134040356 134041009 -108623344 - L1PA4 LINE L1 -3 6152 5494 16432 80 5 38 chr1 134041009 134042397 -108621956 + L1P LINE L1 1949 3226 -2920 1770 149 0 0 chr1 134043115 134043390 -108620963 + AluSx SINE Alu 38 312 0 404 242 0 0 chr1 134046492 134046587 -108617766 + L1MB5 LINE L1 6071 6165 -9 465 279 7 14 chr1 134047594 134047741 -108616612 - MIR SINE MIR -21 241 96 1590 178 10 0 chr1 134047915 134048219 -108616134 - AluSg SINE Alu -3 307 1 668 295 90 27 chr1 134049549 134049584 -108614769 - L1ME3 LINE L1 -240 5922 5891 2183 53 3 75 chr1 134049584 134049902 -108614451 - AluY SINE Alu -16 295 1 668 295 90 27 chr1 134049902 134050279 -108614074 - L1ME3 LINE L1 -271 5891 5484 2318 74 0 7 chr1 134050574 134050883 -108613470 - AluY SINE Alu -4 307 1 635 177 49 43 chr1 134051169 134051333 -108613020 - U1 snRNA snRNA 0 165 1 395 286 29 7 chr1 134051735 134051875 -108612478 - Charlie4 DNA MER1_type -4 1957 1815 477 179 0 0 chr1 134052420 134052498 -108611855 - LTR8 LTR ERV1 0 691 614 2782 150 7 80 chr1 134052510 134053063 -108611290 - LTR8 LTR ERV1 -178 513 1 274 229 74 0 chr1 134053078 134053208 -108611145 - L1ME LINE L1 -273 5891 5745 1720 160 47 72 chr1 134053229 134053344 -108611009 - LTR56 LTR ERV1 0 445 329 2087 53 39 14 chr1 134053344 134053654 -108610699 - AluY SINE Alu 0 311 1 1720 160 47 72 chr1 134053654 134053983 -108610370 - LTR56 LTR ERV1 -116 329 12 577 205 52 139 chr1 134054030 134054156 -108610197 - LTR56-int LTR ERV1 -85 5038 4949 1802 161 7 0 chr1 134054156 134054447 -108609906 + AluJo SINE Alu 1 293 -19 577 205 52 139 chr1 134054447 134054608 -108609745 - LTR56-int LTR ERV1 -174 4949 4776 482 189 118 24 chr1 134054860 134054987 -108609366 + MLT1H1 LTR MaLR 404 555 0 697 223 159 45 chr1 134055053 134055101 -108609252 - MIR SINE MIR -17 245 204 1854 124 60 0 chr1 134055101 134055383 -108608970 - AluSg SINE Alu -11 299 1 697 223 159 45 chr1 134055383 134055554 -108608799 - MIR SINE MIR -58 204 1 1430 176 3 13 chr1 134055860 134056161 -108608192 + AluSx SINE Alu 2 299 -13 1176 260 70 50 chr1 134056161 134056614 -108607739 + L1M4 LINE L1 3103 3571 -2575 2189 96 0 0 chr1 134056614 134056917 -108607436 - AluY SINE Alu -8 303 1 1176 260 70 50 chr1 134056917 134057021 -108607332 + L1M4 LINE L1 3571 3671 -2475 335 179 0 0 chr1 134057144 134057200 -108607153 + AluSq/x SINE Alu 61 116 -186 555 218 24 12 chr1 134057214 134057379 -108606974 - L1MDa LINE L1 -5107 1433 1267 400 265 51 43 chr1 134057373 134057675 -108606678 + L1MDa LINE L1 1905 2949 -3591 * 339 318 22 62 chr1 134057813 134057992 -108606361 - L1MC4 LINE L1 -411 7631 7460 227 322 68 27 chr1 134058826 134058972 -108605381 - MIR3 SINE MIR -7 201 50 2161 109 0 7 chr1 134059510 134059834 -108604519 - AluSx SINE Alu 0 312 1 336 169 34 0 chr1 134060027 134060086 -108604267 + AluS SINE Alu 1 61 -242 1813 143 7 10 chr1 134060225 134060542 -108603811 + AluSx SINE Alu 1 312 0 512 313 6 28 chr1 134060844 134061026 -108603327 + MER5B DNA MER1_type 1 178 0 242 330 25 0 chr1 134061677 134061795 -108602558 - LTR16A1 LTR ERVL 0 457 337 235 238 29 19 chr1 134062777 134062882 -108601471 + (TA)n Simple_repeat Simple_repeat 2 107 0 188 393 44 38 chr1 134064000 134064183 -108600170 - MIR SINE MIR -65 197 14 2012 136 0 67 chr1 134064999 134065360 -108598993 - MER1B DNA MER1_type 0 337 1 231 305 39 7 chr1 134065513 134065667 -108598686 - MER46C DNA MER2_type -8 330 172 1949 102 64 20 chr1 134065733 134066028 -108598325 - AluSx SINE Alu -2 310 3 1915 187 35 156 chr1 134066028 134066239 -108598114 - L1 LINE L1 -2576 3570 3335 2495 29 0 88 chr1 134066239 134066580 -108597773 - AluY SINE Alu 0 311 1 1915 187 35 156 chr1 134066580 134066742 -108597611 - L1 LINE L1 -2811 3335 3155 255 258 32 32 chr1 134066742 134066835 -108597518 + AluSq/x SINE Alu 41 133 -170 1915 187 35 156 chr1 134066835 134066856 -108597497 - L1 LINE L1 -2991 3155 3133 216 0 0 0 chr1 134066856 134066880 -108597473 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1915 187 35 156 chr1 134066880 134067327 -108597026 - L1 LINE L1 -3013 3133 2748 1597 198 9 3 chr1 134067341 134067669 -108596684 - L1MA4 LINE L1 -6 6294 5965 976 284 122 5 chr1 134067765 134068321 -108596032 - L1M4 LINE L1 -1231 4915 4295 1347 51 0 0 chr1 134069616 134069774 -108594579 + L1PA5 LINE L1 5997 6154 0 199 212 59 71 chr1 134070707 134070792 -108593561 + L2 LINE L2 3179 3262 -10 2204 94 3 3 chr1 134071157 134071475 -108592878 + AluSq SINE Alu 1 318 0 270 364 41 8 chr1 134071841 134071962 -108592391 + L2 LINE L2 3148 3272 0 1903 134 0 3 chr1 134073060 134073344 -108591009 + AluSq SINE Alu 1 283 -30 295 111 0 0 chr1 134073459 134073504 -108590849 - AluSq/x SINE Alu -198 104 60 1647 174 0 11 chr1 134073504 134073780 -108590573 + AluJb SINE Alu 22 294 -18 2590 55 3 0 chr1 134073784 134074094 -108590259 + AluY SINE Alu 1 311 0 449 244 57 24 chr1 134074338 134074461 -108589892 - MIR3 SINE MIR -17 191 65 21 0 0 0 chr1 134075067 134075088 -108589265 + AT_rich Low_complexity Low_complexity 1 21 0 227 285 62 0 chr1 134075101 134075231 -108589122 - MIR3 SINE MIR -3 205 68 263 300 19 113 chr1 134075943 134076103 -108588250 + MLT1E3-int LTR MaLR 959 1103 -268 1308 45 0 13 chr1 134076122 134076278 -108588075 + L1PA2 LINE L1 6002 6155 0 571 220 92 29 chr1 134076284 134076457 -108587896 + MLT1E3-int LTR MaLR 1100 1283 -88 580 268 160 14 chr1 134076587 134077060 -108587293 + MLT1E3 LTR MaLR 13 626 0 312 294 27 41 chr1 134077625 134077771 -108586582 + L1MB8 LINE L1 5998 6141 -37 291 239 26 35 chr1 134077883 134077996 -108586357 - L1ME4a LINE L1 -43 6078 5967 325 301 55 18 chr1 134078008 134078171 -108586182 - HAL1b LINE L1 0 1348 1180 321 279 90 60 chr1 134078212 134078445 -108585908 - HAL1b LINE L1 -138 1210 971 815 132 151 0 chr1 134078516 134078668 -108585685 - AluSg/x SINE Alu -1 309 135 1165 240 80 31 chr1 134078756 134079144 -108585209 - L1ME2 LINE L1 -119 6045 5653 313 299 56 49 chr1 134079343 134079487 -108584866 - MIR SINE MIR -65 197 53 281 174 72 58 chr1 134080304 134080373 -108583980 + MER45B DNA AcHobo 311 380 -660 30 27 0 0 chr1 134080804 134080841 -108583512 + AT_rich Low_complexity Low_complexity 1 37 0 661 347 35 7 chr1 134081088 134081494 -108582859 - L1ME4a LINE L1 -302 5819 5403 2599 101 13 46 chr1 134082774 134083162 -108581191 - THE1C LTR MaLR 0 375 1 207 327 75 0 chr1 134083303 134083410 -108580943 + L2 LINE L2 3196 3310 -3 31 26 0 0 chr1 134084472 134084510 -108579843 + AT_rich Low_complexity Low_complexity 1 38 0 294 292 115 36 chr1 134084833 134085136 -108579217 - L1M4c LINE L1 -4547 1835 1537 4711 151 0 17 chr1 134085537 134086446 -108577907 - L1PB4 LINE L1 -3 6153 5228 373 179 0 0 chr1 134086460 134086527 -108577826 - MER31A LTR ERV1 -28 457 391 1947 132 0 27 chr1 134086647 134087017 -108577336 - L1P5 LINE L1 -569 5587 5228 497 194 0 0 chr1 134087030 134087123 -108577230 - MER31A LTR ERV1 -28 457 365 285 29 0 0 chr1 134087152 134087186 -108577167 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2683 77 0 6 chr1 134087186 134087525 -108576828 - L1PA5 LINE L1 -18 6136 5800 185 91 0 30 chr1 134087682 134087715 -108576638 + (TA)n Simple_repeat Simple_repeat 1 32 0 186 317 67 29 chr1 134088734 134088840 -108575513 + MIR SINE MIR 35 143 -66 245 27 54 0 chr1 134089262 134089299 -108575054 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 230 339 48 18 chr1 134089449 134089614 -108574739 + MIR SINE MIR 20 189 -73 2461 51 0 42 chr1 134089929 134090241 -108574112 + AluY SINE Alu 1 299 -12 1040 224 48 71 chr1 134090333 134090712 -108573641 - MLT1A2 LTR MaLR -4 370 1 2754 116 5 0 chr1 134090730 134091101 -108573252 + THE1C LTR MaLR 2 374 -1 382 353 65 7 chr1 134092362 134092515 -108571838 + MIR SINE MIR 7 168 -94 1663 171 170 19 chr1 134092981 134093404 -108570949 + MLT2B1 LTR ERVL 1 534 -20 206 220 17 0 chr1 134093409 134093468 -108570885 + (TA)n Simple_repeat Simple_repeat 1 60 0 287 167 0 0 chr1 134093495 134093543 -108570810 + MLT2C1 LTR ERVL 350 397 0 23 0 0 0 chr1 134093564 134093587 -108570766 + AT_rich Low_complexity Low_complexity 1 23 0 272 293 0 24 chr1 134093746 134093828 -108570525 + (CATG)n Simple_repeat Simple_repeat 1 80 0 2054 187 28 30 chr1 134093828 134094387 -108569966 - MLT2A2 LTR ERVL 0 554 1 315 320 60 77 chr1 134095153 134095897 -108568456 + HAL1b LINE L1 77 808 -540 350 279 74 25 chr1 134096825 134096947 -108567406 + MER94 DNA DNA 3 130 -4 1004 256 107 21 chr1 134097165 134097501 -108566852 - MLT1A1 LTR MaLR 0 365 1 198 381 41 50 chr1 134098280 134098498 -108565855 + L2 LINE L2 2572 2787 -527 182 217 87 0 chr1 134098587 134098633 -108565720 + MIR SINE MIR 87 136 -126 2314 106 0 6 chr1 134098920 134099231 -108565122 - AluSc SINE Alu 0 309 1 2271 109 0 3 chr1 134099742 134100046 -108564307 - AluY SINE Alu -8 303 1 482 199 50 21 chr1 134100352 134100493 -108563860 - Charlie7 DNA MER1_type -1699 913 769 1306 267 92 26 chr1 134100521 134101128 -108563225 - Charlie7 DNA MER1_type -1922 690 44 2301 104 0 0 chr1 134102471 134102770 -108561583 - AluSx SINE Alu -13 299 1 1947 133 0 0 chr1 134103449 134103728 -108560625 + AluSx SINE Alu 24 302 -10 224 219 49 0 chr1 134103817 134103858 -108560495 - L2 LINE L2 -92 3180 3138 212 313 0 12 chr1 134103947 134104030 -108560323 - L2 LINE L2 -83 3230 3149 1006 252 136 46 chr1 134104440 134105018 -108559335 + L1M1 LINE L1 2757 3456 -4290 321 227 110 32 chr1 134104994 134105148 -108559205 + L1MEc LINE L1 2166 2331 -4065 * 1703 262 66 27 chr1 134105203 134105898 -108558455 + L1MEc LINE L1 2414 3135 -3080 334 287 93 22 chr1 134106061 134106385 -108557968 - L1M4 LINE L1 -1583 4563 4217 305 253 84 48 chr1 134107010 134107176 -108557177 + MER104 DNA Tc2 5 176 -4 208 377 39 15 chr1 134107864 134107994 -108556359 + L2 LINE L2 2232 2364 -950 268 339 16 16 chr1 134108623 134108750 -108555603 + L2 LINE L2 2927 3053 -219 1203 207 23 12 chr1 134110910 134111166 -108553187 - L1MB3 LINE L1 -2 6181 5923 272 70 23 0 chr1 134111166 134111209 -108553144 + MADE1 DNA Mariner 37 80 0 231 140 260 0 chr1 134111210 134111230 -108553123 - L1MB3 LINE L1 -244 5924 5910 213 94 0 0 chr1 134111230 134111262 -108553091 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 231 140 260 0 chr1 134111262 134111291 -108553062 - L1MB3 LINE L1 -258 5910 5862 264 242 16 0 chr1 134111859 134111921 -108552432 - MIR SINE MIR -108 154 92 484 206 0 10 chr1 134112036 134112138 -108552215 - AluSg/x SINE Alu -3 309 209 627 115 0 0 chr1 134313192 134313279 -108351074 - AluSq/x SINE Alu -192 120 34 980 128 0 7 chr1 134313286 134313427 -108350926 - AluSq/x SINE Alu -172 140 1 301 255 25 115 chr1 134313435 134313647 -108350706 - L1MEd LINE L1 -4173 2137 1954 1790 168 0 29 chr1 134313647 134313956 -108350397 - AluJo SINE Alu -12 300 1 301 255 25 115 chr1 134313956 134314021 -108350332 - L1MEd LINE L1 -4356 1954 1885 1507 109 0 0 chr1 134314021 134314222 -108350131 - AluSp SINE Alu -5 308 108 820 275 99 44 chr1 134314455 134315453 -108348900 - L1MEd LINE L1 -4695 1615 534 653 270 52 70 chr1 134316085 134316452 -108347901 + L1MC4a LINE L1 5538 5899 -1909 2455 134 37 37 chr1 134316452 134316886 -108347467 - Tigger2a DNA MER2_type 0 434 1 653 270 52 70 chr1 134316886 134316903 -108347450 + L1MC4a LINE L1 5899 5915 -1893 1930 158 3 6 chr1 134316992 134317303 -108347050 + AluJb SINE Alu 1 310 -2 351 330 0 0 chr1 134317553 134317659 -108346694 + MIR3 SINE MIR 98 203 -5 245 269 48 55 chr1 134318238 134318383 -108345970 - L1ME4a LINE L1 -4 6117 5974 222 37 0 0 chr1 134318385 134318412 -108345941 + (CA)n Simple_repeat Simple_repeat 2 28 0 306 326 67 67 chr1 134318414 134318519 -108345834 - L1MC4a LINE L1 -1874 5934 5830 2402 72 0 20 chr1 134318519 134318825 -108345528 - AluY SINE Alu -11 300 1 306 326 67 67 chr1 134318825 134318958 -108345395 - L1MC4a LINE L1 -1977 5831 5696 998 246 21 8 chr1 134319013 134319249 -108345104 - MIR SINE MIR -22 240 2 487 276 30 35 chr1 134319254 134319457 -108344896 - L1MC4a LINE L1 -2190 5618 5417 258 32 0 0 chr1 134319669 134319700 -108344653 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 261 229 43 0 chr1 134320831 134320901 -108343452 + MER5A DNA MER1_type 26 98 -91 292 270 101 0 chr1 134321169 134321258 -108343095 + MER63A DNA MER1_type 106 203 -7 2105 137 21 33 chr1 134321670 134321902 -108342451 - MLT1B LTR MaLR 0 593 360 2276 98 13 70 chr1 134321902 134322162 -108342191 - THE1B LTR MaLR 0 364 132 2100 146 3 0 chr1 134322162 134322470 -108341883 + AluSx SINE Alu 1 309 -3 2276 98 13 70 chr1 134322470 134322595 -108341758 - THE1B LTR MaLR -232 132 1 2105 137 21 33 chr1 134322595 134322755 -108341598 - MLT1B LTR MaLR -233 360 1 25 0 0 0 chr1 134323578 134323603 -108340750 + AT_rich Low_complexity Low_complexity 1 25 0 1699 177 0 24 chr1 134323927 134324221 -108340132 - AluJb SINE Alu -25 287 1 207 385 84 0 chr1 134325224 134325307 -108339046 + L2 LINE L2 3151 3240 -32 1962 121 22 61 chr1 134325326 134325689 -108338664 + MLT2D LTR ERVL 1 349 -65 207 0 0 0 chr1 134325689 134325712 -108338641 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 479 239 55 9 chr1 134329345 134329454 -108334899 + MIR SINE MIR 26 139 -123 188 65 0 32 chr1 134329458 134329489 -108334864 + (TAA)n Simple_repeat Simple_repeat 2 31 0 229 257 14 14 chr1 134329734 134329804 -108334549 + MIR SINE MIR 193 262 0 2005 151 3 25 chr1 134330678 134330995 -108333358 - AluJo SINE Alu -2 310 1 443 252 88 96 chr1 134331288 134331653 -108332700 + MLT1I LTR MaLR 40 401 -8 542 307 92 14 chr1 134333045 134333263 -108331090 - MIR SINE MIR -8 254 20 279 336 53 18 chr1 134333809 134333922 -108330431 + L2 LINE L2 3197 3313 0 207 248 14 83 chr1 134334137 134334282 -108330071 - L2 LINE L2 -1480 1834 1700 741 188 0 0 chr1 134336191 134336324 -108328029 + FLAM_A SINE Alu 1 133 0 708 130 51 51 chr1 134336341 134336479 -108327874 + L1MC2 LINE L1 6207 6344 0 1895 157 0 26 chr1 134337666 134337978 -108326375 - AluJo SINE Alu -8 304 1 723 250 5 31 chr1 134338004 134338196 -108326157 + MIR SINE MIR 31 217 -45 810 320 118 52 chr1 134338236 134338620 -108325733 - L3 LINE CR1 -388 1189 832 252 0 0 0 chr1 134338620 134338648 -108325705 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 810 320 118 52 chr1 134338648 134339086 -108325267 - L3 LINE CR1 -745 832 313 363 306 63 0 chr1 134339834 134339945 -108324408 + L2 LINE L2 3155 3272 0 321 273 55 52 chr1 134341925 134342088 -108322265 - MIR3 SINE MIR -52 156 30 385 301 168 5 chr1 134342591 134342800 -108321553 - L3 LINE CR1 -98 1479 1237 513 156 10 10 chr1 134342826 134342917 -108321436 + MLT1B LTR MaLR 1 92 -294 1928 144 147 13 chr1 134342917 134343291 -108321062 - MSTA LTR MaLR 0 428 5 6903 169 135 20 chr1 134343295 134344775 -108319578 - MSTA-int LTR MaLR 0 1651 1 2060 134 137 13 chr1 134344775 134345156 -108319197 - MSTA LTR MaLR 0 428 1 1473 153 23 36 chr1 134345156 134345463 -108318890 + MLT1B LTR MaLR 88 390 0 189 74 0 0 chr1 134345966 134345993 -108318360 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 321 222 156 0 chr1 134346232 134346322 -108318031 - FAM SINE Alu 0 175 72 1030 184 0 12 chr1 134346322 134346490 -108317863 - AluJo SINE Alu -146 166 1 996 164 41 0 chr1 134346493 134346664 -108317689 - AluSg/x SINE Alu -8 304 127 2148 123 0 22 chr1 134346678 134346995 -108317358 - AluSg SINE Alu 0 310 1 213 256 177 25 chr1 134351130 134351256 -108313097 + MIR SINE MIR 31 168 -62 670 226 34 0 chr1 134352340 134352544 -108311809 - L1MD3 LINE L1 -14 7981 7771 647 101 11 0 chr1 134352544 134352633 -108311720 - 5S rRNA rRNA -31 90 1 596 231 7 7 chr1 134352636 134352779 -108311574 - L1MD3 LINE L1 -214 7781 7639 2134 230 101 12 chr1 134352781 134353442 -108310911 - MER50 LTR ERV1 -2 732 13 1106 235 13 26 chr1 134353442 134353673 -108310680 - L1MC4a LINE L1 -329 7479 7251 4083 132 30 33 chr1 134353673 134354402 -108309951 + LTR8A LTR ERV1 1 727 0 1106 235 13 26 chr1 134354402 134354481 -108309872 - L1MC4a LINE L1 -557 7251 7173 * 1518 237 96 59 chr1 134354478 134355195 -108309158 - L1MC4a LINE L1 -1811 5997 5254 367 314 71 33 chr1 134355197 134356318 -108308035 - L1MC4a LINE L1 -893 5253 4018 1202 116 20 30 chr1 134356329 134356528 -108307825 - MER4B LTR ERV1 -6 604 408 5494 143 21 53 chr1 134356528 134357529 -108306824 - LTR5 LTR ERVK 0 969 1 412 303 83 22 chr1 134358935 134359212 -108305141 + LTR16C LTR ERVL 186 479 -12 2309 98 3 0 chr1 134359810 134360117 -108304236 - AluSp SINE Alu -5 308 1 445 249 267 15 chr1 134360272 134360476 -108303877 - MIR SINE MIR -8 254 4 24 0 0 0 chr1 134360566 134360590 -108303763 + AT_rich Low_complexity Low_complexity 1 24 0 398 305 61 12 chr1 134360609 134360773 -108303580 - L1M4 LINE L1 -960 5186 5015 1205 303 83 76 chr1 134360902 134361824 -108302529 - L1M4 LINE L1 -1315 4831 3903 1605 326 129 35 chr1 134361826 134361877 -108302476 - L1M4 LINE L1 -2302 5428 5383 1981 187 33 78 chr1 134361877 134362408 -108301945 + LTR40a LTR ERVL 1 509 -10 1667 176 3 20 chr1 134362408 134362709 -108301644 - AluJo SINE Alu -16 296 1 1605 326 129 35 chr1 134362716 134362937 -108301416 - L1M4 LINE L1 -2347 5383 5184 1713 148 3 48 chr1 134362937 134363248 -108301105 + AluSx SINE Alu 1 297 -15 1605 326 129 35 chr1 134363248 134364565 -108299788 - L1M4 LINE L1 -2546 5184 2131 7289 105 8 7 chr1 134364573 134365743 -108298610 - L1MA1 LINE L1 -4 6298 5127 469 234 75 75 chr1 134366079 134366267 -108298086 - MIR3 SINE MIR -6 202 15 256 99 84 56 chr1 134366530 134366601 -108297752 - L1M2c LINE L1 -4548 2241 2169 2532 45 0 0 chr1 134367961 134368271 -108296082 - AluY SINE Alu 0 311 2 227 345 58 36 chr1 134368522 134368661 -108295692 + MER5A DNA MER1_type 48 189 0 266 224 9 140 chr1 134368794 134368901 -108295452 - MIR SINE MIR -97 111 19 539 239 223 0 chr1 134369174 134369358 -108294995 + MIR SINE MIR 23 247 -15 349 263 179 6 chr1 134369352 134369508 -108294845 - MIR SINE MIR -2 260 78 * 382 311 65 8 chr1 134369633 134369802 -108294551 + MIR SINE MIR 8 184 -27 203 261 0 87 chr1 134371144 134371236 -108293117 - MIR SINE MIR -55 207 124 2188 230 88 6 chr1 134371368 134371881 -108292472 - MLT1H1 LTR MaLR 0 555 1 289 247 76 143 chr1 134371907 134372235 -108292118 - MLT1H1-int LTR MaLR -30 1341 1036 398 260 91 37 chr1 134372435 134372731 -108291622 - MLT1H1-int LTR MaLR -928 443 1 2337 227 39 6 chr1 134372731 134373246 -108291107 - MLT1H1 LTR MaLR 0 555 24 455 292 90 39 chr1 134374138 134374316 -108290037 + MIR3 SINE MIR 22 208 0 4478 256 112 28 chr1 134374385 134376296 -108288057 - L2 LINE L2 0 3313 1234 924 265 69 18 chr1 134376645 134376966 -108287387 - MLT1I LTR MaLR -18 391 63 181 373 29 10 chr1 134378191 134378293 -108286060 - MIR SINE MIR -95 167 64 428 200 0 0 chr1 134378635 134378710 -108285643 + MER116 DNA Mariner 1 75 -5 661 313 50 47 chr1 134379001 134379384 -108284969 + L2 LINE L2 1662 2045 -1269 326 290 57 8 chr1 134379392 134379516 -108284837 + L2 LINE L2 3141 3270 -2 1059 207 5 5 chr1 134381147 134381379 -108282974 - L1MA9 LINE L1 -25 6274 6044 311 314 65 59 chr1 134381481 134381650 -108282703 + MIR SINE MIR 66 235 -27 218 345 0 0 chr1 134381655 134381739 -108282614 + MIR SINE MIR 173 256 -6 636 293 48 10 chr1 134381882 134382090 -108282263 + LTR16C LTR ERVL 273 488 -3 638 265 97 78 chr1 134382208 134382529 -108281824 - L2 LINE L2 0 3313 2987 293 259 62 0 chr1 134382899 134382980 -108281373 - MIR SINE MIR -60 202 117 210 241 287 46 chr1 134382956 134383064 -108281289 - MIR3 SINE MIR -67 141 8 * 354 200 0 0 chr1 134384063 134384133 -108280220 + tRNA-Glu-GAG tRNA tRNA 2 71 -4 461 277 0 19 chr1 134385185 134385340 -108279013 + U1 snRNA snRNA 4 155 -10 2196 71 0 0 chr1 134386528 134386824 -108277529 - AluY SINE Alu -15 296 1 183 191 0 24 chr1 134386918 134386960 -108277393 + MIR SINE MIR 170 210 -52 329 188 14 14 chr1 134388907 134388976 -108275377 - tRNA-Gly-GGG tRNA tRNA -3 71 3 400 187 0 27 chr1 134389810 134389885 -108274468 + tRNA-Gly-GGG tRNA tRNA 1 73 -1 3559 95 95 34 chr1 134389946 134390565 -108273788 - MER51D LTR ERV1 0 657 1 220 206 29 15 chr1 134390994 134391062 -108273291 + (TA)n Simple_repeat Simple_repeat 1 69 0 588 227 0 0 chr1 134391170 134391280 -108273073 + FLAM_A SINE Alu 4 113 -29 2274 101 3 0 chr1 134391280 134391588 -108272765 - AluSx SINE Alu -3 309 1 423 378 23 14 chr1 134391770 134391987 -108272366 + MIR SINE MIR 42 260 -2 31 44 0 0 chr1 134391988 134392033 -108272320 + AT_rich Low_complexity Low_complexity 1 45 0 747 216 66 0 chr1 134392061 134392264 -108272089 - L1ME2 LINE L1 -88 6074 5855 1748 160 16 16 chr1 134392332 134392644 -108271709 - AluJb SINE Alu 0 312 1 892 284 61 41 chr1 134393121 134393651 -108270702 - L2 LINE L2 -290 2982 2445 1950 83 0 8 chr1 134395353 134395619 -108268734 + AluY SINE Alu 33 296 -15 625 156 0 2 chr1 134395946 134396194 -108268159 + AluJb SINE Alu 3 298 -14 638 222 150 36 chr1 134396259 134396563 -108267790 - L1ME2 LINE L1 -511 5651 5313 22 0 0 0 chr1 134399352 134399374 -108264979 + GC_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr1 134399953 134399995 -108264358 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 134400192 134400226 -108264127 + GC_rich Low_complexity Low_complexity 1 34 0 464 242 58 65 chr1 134400284 134400454 -108263899 - L1ME2 LINE L1 -810 5336 5167 1602 173 10 7 chr1 134400454 134400749 -108263604 - AluJb SINE Alu -16 296 1 464 242 58 65 chr1 134400749 134400838 -108263515 - L1ME2 LINE L1 -979 5167 5079 2286 92 0 16 chr1 134400838 134401153 -108263200 + AluSg SINE Alu 1 310 0 1729 164 7 10 chr1 134401215 134401525 -108262828 - AluJb SINE Alu -3 309 1 692 206 23 0 chr1 134401525 134401656 -108262697 - AluJo SINE Alu -177 135 2 26 30 0 0 chr1 134401664 134401697 -108262656 + AT_rich Low_complexity Low_complexity 1 33 0 452 308 103 5 chr1 134401709 134401904 -108262449 + L2 LINE L2 3100 3313 0 406 259 36 9 chr1 134401981 134402093 -108262260 + MLT1I LTR MaLR 277 391 -18 1018 130 23 23 chr1 134402313 134402490 -108261863 - AluJo SINE Alu -52 260 84 499 291 43 0 chr1 134402543 134402684 -108261669 + L2 LINE L2 2371 2517 -797 206 250 0 0 chr1 134403040 134403088 -108261265 + L2 LINE L2 3265 3312 -1 214 313 8 47 chr1 134403205 134403333 -108261020 + CT-rich Low_complexity Low_complexity 2 124 0 203 381 57 0 chr1 134403573 134403678 -108260675 - L2 LINE L2 -5 3308 3198 769 197 0 16 chr1 134404176 134404421 -108259932 + CT-rich Low_complexity Low_complexity 1 240 0 3356 222 55 16 chr1 134404863 134406348 -108258005 - L1MC2 LINE L1 -5 6619 4992 908 283 86 16 chr1 134406348 134406733 -108257620 - L1MC2 LINE L1 -5996 430 19 320 315 25 12 chr1 134406741 134406903 -108257450 - L1MB8 LINE L1 -25 6153 5990 1827 148 3 3 chr1 134407230 134407527 -108256826 - AluSq SINE Alu -4 309 13 6662 109 5 9 chr1 134407542 134408515 -108255838 + LTR5 LTR ERVK 1 969 0 803 265 139 30 chr1 134408756 134409212 -108255141 - MLT1E2 LTR MaLR 0 654 111 605 244 32 113 chr1 134409445 134409790 -108254563 - MLT1E2-int LTR MaLR -98 1273 957 1336 171 27 105 chr1 134409833 134410243 -108254110 - L1ME2 LINE L1 -263 5901 5524 222 229 66 16 chr1 134411186 134411247 -108253106 - MIR3 SINE MIR -7 201 138 548 233 105 51 chr1 134411848 134412112 -108252241 + LTR33 LTR ERVL 29 275 -248 507 48 0 0 chr1 134412628 134412691 -108251662 - AluY SINE Alu -246 64 2 22 35 0 0 chr1 134412694 134412723 -108251630 + AT_rich Low_complexity Low_complexity 1 29 0 2369 257 26 58 chr1 134412723 134413298 -108251055 + L1ME2 LINE L1 3863 4392 -1754 2274 119 3 0 chr1 134413298 134413608 -108250745 + AluY SINE Alu 1 311 0 2369 257 26 58 chr1 134413608 134414067 -108250286 + L1ME2 LINE L1 4392 4864 -1282 189 0 0 0 chr1 134414109 134414130 -108250223 + (TG)n Simple_repeat Simple_repeat 2 22 0 234 150 0 0 chr1 134414181 134414221 -108250132 + (TA)n Simple_repeat Simple_repeat 2 41 0 2128 249 96 29 chr1 134414232 134414601 -108249752 + L1ME2 LINE L1 5299 5642 -522 4863 83 12 22 chr1 134414601 134415267 -108249086 - PABL_A LTR ERV1 0 660 2 2128 249 96 29 chr1 134415267 134415696 -108248657 + L1ME2 LINE L1 5642 6151 -13 1002 279 107 8 chr1 134415721 134416205 -108248148 + L1ME2 LINE L1 4329 4860 -1286 592 171 34 11 chr1 134417022 134417198 -108247155 + (TA)n Simple_repeat Simple_repeat 1 180 0 1464 99 19 19 chr1 134417217 134417429 -108246924 - L1PA6 LINE L1 -34 6120 5909 899 277 125 30 chr1 134417458 134418390 -108245963 + L1ME2 LINE L1 4862 5892 -272 2511 45 3 45 chr1 134418390 134418704 -108245649 + AluY SINE Alu 1 301 -10 899 277 125 30 chr1 134418704 134418739 -108245614 + L1ME2 LINE L1 5892 5922 -242 1789 163 10 0 chr1 134420046 134420353 -108244000 + AluSg SINE Alu 1 310 0 372 293 7 14 chr1 134420521 134420668 -108243685 + MIR SINE MIR 96 241 -21 342 211 42 42 chr1 134421671 134421766 -108242587 - L1MB5 LINE L1 -9 6165 6071 1025 211 5 5 chr1 134424352 134424556 -108239797 + AluJb SINE Alu 1 204 -108 2318 82 0 26 chr1 134424639 134424945 -108239408 + AluY SINE Alu 1 298 -13 1854 154 6 6 chr1 134424951 134425263 -108239090 + AluSx SINE Alu 1 312 0 1843 158 13 0 chr1 134426340 134426644 -108237709 + AluSg SINE Alu 1 308 -2 424 272 7 14 chr1 134426806 134426953 -108237400 + MIR SINE MIR 96 241 -21 401 242 0 0 chr1 134427903 134427998 -108236355 - L1MB5 LINE L1 -9 6165 6071 1777 164 0 0 chr1 134431090 134431359 -108232994 - AluSx SINE Alu -6 306 38 16475 78 5 41 chr1 134432077 134433464 -108230889 - L1P LINE L1 -2920 3226 1966 5472 46 1 0 chr1 134433464 134434116 -108230237 + L1PA4 LINE L1 5494 6146 -9 16475 78 5 41 chr1 134434116 134435170 -108229183 - L1P LINE L1 -4180 1966 875 450 0 0 0 chr1 134437387 134437437 -108226916 + (TG)n Simple_repeat Simple_repeat 1 50 0 221 146 21 0 chr1 134438943 134438991 -108225362 + CT-rich Low_complexity Low_complexity 1 49 0 408 67 0 0 chr1 134440485 134440511 -108223842 + (TG)n Simple_repeat Simple_repeat 1 86 0 408 67 0 0 chr1 134440511 134440571 -108223782 + (TG)n Simple_repeat Simple_repeat 2 61 0 287 150 38 12 chr1 134441651 134441731 -108222622 + GA-rich Low_complexity Low_complexity 2 83 0 453 62 0 0 chr1 134442137 134442202 -108222151 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 251 317 10 10 chr1 134443356 134443457 -108220896 + L1MC4 LINE L1 7460 7560 -482 531 306 66 36 chr1 134443598 134443961 -108220392 - L1MC4 LINE L1 -480 7562 7189 266 65 0 22 chr1 134444323 134444369 -108219984 + (TG)n Simple_repeat Simple_repeat 1 45 0 236 268 31 31 chr1 134445466 134445563 -108218790 - L1MC5 LINE L1 -50 7911 7815 243 188 72 0 chr1 134445622 134445691 -108218662 - MLT2D LTR ERVL -75 440 367 604 281 21 10 chr1 134445716 134445908 -108218445 - MLT2D LTR ERVL -220 194 1 964 231 50 57 chr1 134445908 134446310 -108218043 - L1M4 LINE L1 -889 5257 4859 1626 149 0 26 chr1 134446610 134446878 -108217475 + AluSq SINE Alu 50 310 -3 326 250 218 32 chr1 134446878 134447186 -108217167 + L1MEc LINE L1 983 1347 -5216 355 280 102 55 chr1 134447239 134447639 -108216714 + L1MEc LINE L1 1265 1683 -4701 258 235 0 0 chr1 134447636 134447687 -108216666 + L1 LINE L1 4195 4245 -1901 * 275 154 15 0 chr1 134447705 134447770 -108216583 + (CA)n Simple_repeat Simple_repeat 2 67 0 7004 65 5 3 chr1 134447892 134449459 -108214894 + L1PA6 LINE L1 4583 6151 -3 3635 261 65 32 chr1 134449459 134450875 -108213478 - L1M1 LINE L1 -4985 2580 18 21 0 0 0 chr1 134450979 134451000 -108213353 + AT_rich Low_complexity Low_complexity 1 21 0 353 266 92 40 chr1 134451083 134451256 -108213097 + MER5A DNA MER1_type 7 188 -1 355 267 20 27 chr1 134452977 134453123 -108211230 - MIR3 SINE MIR -32 176 32 203 374 58 0 chr1 134459117 134459256 -108205097 + MIR SINE MIR 20 166 -96 584 274 100 35 chr1 134459348 134459578 -108204775 - MIR SINE MIR -15 247 3 383 255 0 59 chr1 134460420 134460522 -108203831 + L1MC4 LINE L1 6608 6703 -1339 224 232 14 29 chr1 134460522 134460591 -108203762 + (TA)n Simple_repeat Simple_repeat 2 69 0 868 164 0 0 chr1 134460705 134460845 -108203508 - AluSq/x SINE Alu -171 142 3 2573 162 34 0 chr1 134461342 134461787 -108202566 - LOR1b LTR ERV1 -1 460 1 533 176 0 0 chr1 134461787 134461878 -108202475 - LOR1b-int LTR ERV1 0 8120 8030 * 1932 79 4 0 chr1 134461877 134462130 -108202223 - LOR1-int LTR ERV1 -2056 6064 5811 * 5494 192 62 15 chr1 134462119 134463498 -108200855 - LOR1-int LTR ERV1 -1050 4896 3570 555 185 0 19 chr1 134463498 134463669 -108200684 + FLAM_C SINE Alu 38 206 0 3042 128 25 73 chr1 134463679 134464240 -108200113 - LOR1-int LTR ERV1 -4058 4062 3529 * 3880 96 10 33 chr1 134464232 134464432 -108199921 - LOR1-int LTR ERV1 -4515 3605 3402 1523 160 59 21 chr1 134464432 134464720 -108199633 - AluSx SINE Alu -13 299 1 3880 96 10 33 chr1 134464720 134465131 -108199222 - LOR1-int LTR ERV1 -4718 3402 3008 1294 313 46 21 chr1 134465373 134465894 -108198459 - L1MCc LINE L1 -5859 564 31 1449 203 46 61 chr1 134466759 134467154 -108197199 - MLT1B LTR MaLR -1 389 1 1174 103 6 6 chr1 134467182 134467357 -108196996 - AluSp SINE Alu -2 311 137 410 289 14 7 chr1 134467744 134467886 -108196467 - L2 LINE L2 -821 2493 2351 908 177 28 22 chr1 134468314 134468495 -108195858 + MER58 DNA MER1_type 2238 2419 -1 4628 158 14 7 chr1 134468660 134469696 -108194657 + L1PA16 LINE L1 5018 6059 -107 228 132 0 0 chr1 134469696 134469734 -108194619 + L1PB4 LINE L1 6095 6132 -24 1816 237 54 18 chr1 134469849 134470465 -108193888 + L1M4 LINE L1 3038 3675 -2471 2132 65 0 0 chr1 134471236 134471512 -108192841 - AluY SINE Alu -35 276 1 1772 153 7 3 chr1 134471751 134472058 -108192295 + AluSx SINE Alu 5 312 0 495 127 0 0 chr1 134472188 134472259 -108192094 - tRNA-Gly-GGG tRNA tRNA -3 71 1 2077 101 6 29 chr1 134473130 134473446 -108190907 - L1PA11 LINE L1 -1 6173 5865 2091 100 4 0 chr1 134473458 134473767 -108190586 + AluSg SINE Alu 1 310 0 2215 81 3 0 chr1 134473767 134474074 -108190279 + AluSp SINE Alu 1 308 0 310 229 34 157 chr1 134474128 134474284 -108190069 - L1MDa LINE L1 -3956 2584 2471 2356 80 0 3 chr1 134474284 134474596 -108189757 - AluY SINE Alu 0 311 1 310 229 34 157 chr1 134474596 134474701 -108189652 - L1MDa LINE L1 -4069 2471 2355 2246 60 0 14 chr1 134474954 134475285 -108189068 - AluY SINE Alu 0 327 1 1772 149 14 0 chr1 134475590 134475708 -108188645 + AluJb SINE Alu 5 120 -192 315 0 0 0 chr1 134475708 134475743 -108188610 + (CA)n Simple_repeat Simple_repeat 2 36 0 1772 149 14 0 chr1 134475743 134475900 -108188453 + AluJb SINE Alu 120 284 -28 1535 215 53 30 chr1 134476353 134476786 -108187567 + LTR47B LTR ERVL 1 443 0 1020 118 41 30 chr1 134477287 134477456 -108186897 - Tigger7 DNA MER2_type -1 2586 2416 * 2078 167 78 51 chr1 134477454 134477536 -108186817 - Tigger7 DNA MER2_type -2025 462 384 1996 128 0 7 chr1 134477536 134477834 -108186519 - AluSx SINE Alu -16 296 1 2078 167 78 51 chr1 134477834 134477887 -108186466 - Tigger7 DNA MER2_type -2103 384 334 2420 69 0 0 chr1 134477887 134478193 -108186160 - AluY SINE Alu -5 306 1 2324 111 39 29 chr1 134478203 134478618 -108185735 - L1MA4A LINE L1 -5 6298 5880 2078 167 78 51 chr1 134478618 134478920 -108185433 - Tigger7 DNA MER2_type -2161 326 1 336 206 41 14 chr1 134479648 134479721 -108184632 + L2 LINE L2 3239 3313 0 310 257 0 27 chr1 134480767 134480841 -108183512 - tRNA-Gly-GGG tRNA tRNA -1 73 2 453 141 0 0 chr1 134481876 134481947 -108182406 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 364 331 36 7 chr1 134483696 134483835 -108180518 + L1ME LINE L1 5678 5820 -301 439 264 0 19 chr1 134485244 134485399 -108178954 - U1 snRNA snRNA -10 155 4 342 0 0 0 chr1 134486112 134486150 -108178203 + (TC)n Simple_repeat Simple_repeat 1 38 0 2081 79 0 4 chr1 134486150 134486428 -108177925 - AluSc SINE Alu -32 277 1 279 0 0 0 chr1 134486438 134486469 -108177884 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1215 255 69 41 chr1 134486660 134487443 -108176910 - L1MEc LINE L1 -4258 2138 1288 327 209 183 26 chr1 134487443 134487558 -108176795 + FLAM_C SINE Alu 1 133 0 415 297 38 24 chr1 134487569 134487778 -108176575 - L1MEc LINE L1 -5114 1282 1071 215 238 16 0 chr1 134487809 134487872 -108176481 + (CTTG)n Simple_repeat Simple_repeat 1 64 0 1008 218 92 25 chr1 134488202 134488518 -108175835 - MER46C DNA MER2_type 0 338 2 653 313 131 38 chr1 134489191 134489719 -108174634 - L3 LINE CR1 -234 1343 767 302 233 32 93 chr1 134490770 134490934 -108173419 - MIR SINE MIR -61 147 21 285 271 115 0 chr1 134491723 134491819 -108172534 - L3 LINE CR1 -1211 366 260 298 371 52 39 chr1 134492282 134492514 -108171839 - L2 LINE L2 -176 3096 2862 277 284 15 0 chr1 134492644 134492711 -108171642 + L2 LINE L2 3238 3305 -8 2194 243 109 8 chr1 134493189 134493840 -108170513 + L1MCa LINE L1 43 759 -5667 232 208 14 14 chr1 134493842 134493914 -108170439 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 797 200 14 2 chr1 134493935 134494145 -108170208 - MER2 DNA MER2_type 0 345 85 2198 174 49 23 chr1 134494145 134494658 -108169695 + pTR5 LTR ERV1 744 1269 -1169 826 114 8 0 chr1 134495592 134495715 -108168638 + FLAM_C SINE Alu 1 124 -19 1706 132 51 7 chr1 134496145 134496441 -108167912 - AluSx SINE Alu -3 309 1 2057 124 0 9 chr1 134496721 134497036 -108167317 + AluJb SINE Alu 1 312 0 453 141 0 0 chr1 134498746 134498817 -108165536 - tRNA-Gly-GGG tRNA tRNA -3 71 1 310 257 0 27 chr1 134499853 134499927 -108164426 + tRNA-Gly-GGG tRNA tRNA 2 73 -1 336 206 41 14 chr1 134500973 134501046 -108163307 - L2 LINE L2 0 3313 3239 2078 167 78 51 chr1 134501774 134502076 -108162277 + Tigger7 DNA MER2_type 1 293 -2194 2324 111 39 29 chr1 134502076 134502491 -108161862 + L1MA4A LINE L1 5880 6298 -5 2398 72 0 0 chr1 134502501 134502806 -108161547 + AluY SINE Alu 1 305 -6 2078 167 78 51 chr1 134502806 134502859 -108161494 + Tigger7 DNA MER2_type 301 351 -2136 1996 128 0 7 chr1 134502859 134503157 -108161196 + AluSx SINE Alu 1 296 -16 2078 167 78 51 chr1 134503157 134503239 -108161114 + Tigger7 DNA MER2_type 351 462 -2025 1020 118 41 30 chr1 134503237 134503406 -108160947 + Tigger7 DNA MER2_type 2316 2486 -1 * 1535 215 53 30 chr1 134503907 134504340 -108160013 - LTR47B LTR ERVL 0 443 1 1772 149 14 0 chr1 134504793 134504950 -108159403 - AluJb SINE Alu -28 284 120 351 0 0 0 chr1 134504950 134504989 -108159364 + (TG)n Simple_repeat Simple_repeat 2 40 0 1772 149 14 0 chr1 134504989 134505107 -108159246 - AluJb SINE Alu -192 120 5 2343 46 0 30 chr1 134505411 134505715 -108158638 + AluY SINE Alu 1 295 -16 582 218 74 102 chr1 134506303 134506519 -108157834 + MER63A DNA MER1_type 1 210 0 214 352 111 29 chr1 134507457 134507798 -108156555 - L2 LINE L2 -660 2654 2286 207 88 0 0 chr1 134509066 134509100 -108155253 + (T)n Simple_repeat Simple_repeat 1 34 0 339 302 29 22 chr1 134509264 134509406 -108154947 - MIR SINE MIR -59 149 28 380 319 173 18 chr1 134509488 134509817 -108154536 + L3 LINE CR1 530 909 -668 189 298 43 0 chr1 134509890 134509937 -108154416 + L3 LINE CR1 1023 1071 -506 389 299 80 0 chr1 134509949 134510086 -108154267 + MIR SINE MIR 98 245 -17 362 278 295 43 chr1 134510096 134510262 -108154091 + L3 LINE CR1 1069 1192 -385 2146 88 32 3 chr1 134510262 134510547 -108153806 - AluSc SINE Alu -14 295 3 362 278 295 43 chr1 134510547 134510729 -108153624 + L3 LINE CR1 1192 1505 -72 192 113 151 57 chr1 134510912 134510965 -108153388 + L2 LINE L2 3256 3313 0 2173 128 0 3 chr1 134510974 134511278 -108153075 - AluSx SINE Alu -9 303 1 1232 223 21 71 chr1 134512159 134512651 -108151702 - MLT2B3 LTR ERVL -14 540 1 306 304 104 0 chr1 134514392 134514507 -108149846 + HAL1b LINE L1 785 911 -437 540 275 111 37 chr1 134514563 134514752 -108149601 + MIR SINE MIR 36 238 -24 269 306 28 0 chr1 134514913 134514985 -108149368 - MIR SINE MIR -77 131 58 218 353 24 12 chr1 134515209 134515294 -108149059 - MIR SINE MIR -92 116 31 398 0 0 0 chr1 134517884 134517930 -108146423 - L1PA5 LINE L1 -2476 3670 3625 13896 38 17 37 chr1 134517930 134520446 -108143907 + L1PA5 LINE L1 3647 6154 0 902 168 71 5 chr1 134520463 134520659 -108143694 - MER6B DNA MER2_type 0 210 2 367 247 11 43 chr1 134520710 134520803 -108143550 - L2 LINE L2 0 3313 3224 2157 116 3 3 chr1 134521001 134521293 -108143060 - AluSc SINE Alu -17 292 1 802 169 0 0 chr1 134521680 134521804 -108142549 - FLAM_C SINE Alu -18 125 2 1879 141 14 3 chr1 134522340 134522623 -108141730 - AluJb SINE Alu -15 297 12 619 166 4 115 chr1 134524041 134524276 -108140077 + L1ME1 LINE L1 2063 2271 -4125 693 226 7 0 chr1 134524292 134524429 -108139924 - MER58A DNA MER1_type 0 138 1 3435 208 92 8 chr1 134524432 134525494 -108138859 + L1ME1 LINE L1 2231 3381 -2834 256 114 0 23 chr1 134525483 134525527 -108138826 + L1MB7 LINE L1 5439 5481 -703 * 7645 27 7 5 chr1 134525538 134526889 -108137464 - L1PA3 LINE L1 -3 6152 4801 3899 26 4 0 chr1 134526889 134527386 -108136967 + L1PA3 LINE L1 4313 4811 -1335 1734 161 9 92 chr1 134527389 134527516 -108136837 + L1MB7 LINE L1 5479 5615 -563 2100 113 0 7 chr1 134527516 134527824 -108136529 + AluSg SINE Alu 1 306 0 1734 161 9 92 chr1 134527824 134527924 -108136429 + L1MB7 LINE L1 5615 5722 -456 2207 104 3 0 chr1 134527924 134528223 -108136130 + AluSx SINE Alu 1 300 -12 1734 161 9 92 chr1 134528223 134528366 -108135987 + L1MB7 LINE L1 5722 5814 -364 1486 163 41 48 chr1 134528366 134528526 -108135827 - AluJb SINE Alu -20 292 133 258 32 0 0 chr1 134528526 134528557 -108135796 + (TG)n Simple_repeat Simple_repeat 2 32 0 1486 163 41 48 chr1 134528557 134528690 -108135663 - AluJb SINE Alu -179 133 1 1734 161 9 92 chr1 134528690 134528749 -108135604 + L1MB7 LINE L1 5814 5876 -302 246 128 26 0 chr1 134528765 134528804 -108135549 + Alu SINE Alu 86 125 -177 876 168 0 50 chr1 134528850 134529029 -108135324 + L1MB7 LINE L1 5865 6034 -150 1437 0 0 0 chr1 134529029 134529184 -108135169 - AluYa5 SINE Alu -2 309 155 664 180 27 7 chr1 134529184 134529334 -108135019 + L1MB8 LINE L1 6021 6173 -5 3124 216 25 28 chr1 134529335 134529776 -108134577 + L1ME1 LINE L1 3362 3802 -2413 1841 168 10 0 chr1 134529776 134530067 -108134286 - AluJo SINE Alu -16 296 3 3124 216 25 28 chr1 134530067 134530527 -108133826 + L1ME1 LINE L1 3802 4261 -1954 24271 148 32 25 chr1 134530568 134532613 -108131740 + L1PA10 LINE L1 1 2030 -4453 2558 71 0 0 chr1 134532613 134532923 -108131430 - AluY SINE Alu -1 310 1 24271 148 32 25 chr1 134532923 134537218 -108127135 + L1PA10 LINE L1 2030 6483 0 2973 220 13 34 chr1 134537213 134538032 -108126321 + L1ME1 LINE L1 5383 6184 -51 * 403 218 39 58 chr1 134537930 134538086 -108126267 + L1MA10 LINE L1 6249 6401 -2 * 2148 98 0 35 chr1 134538095 134538410 -108125943 + AluSc SINE Alu 1 304 -5 2052 123 3 7 chr1 134538424 134538717 -108125636 + AluSx SINE Alu 1 292 -20 435 100 0 0 chr1 134539304 134539374 -108124979 + (GA)n Simple_repeat Simple_repeat 2 71 0 576 40 0 0 chr1 134539988 134540063 -108124290 + (GA)n Simple_repeat Simple_repeat 2 76 0 2116 90 4 4 chr1 134540064 134540341 -108124012 - AluSx SINE Alu -35 277 1 872 253 96 4 chr1 134540835 134541064 -108123289 - MIR SINE MIR -8 254 5 22 0 0 0 chr1 134541133 134541155 -108123198 + AT_rich Low_complexity Low_complexity 1 22 0 450 223 86 36 chr1 134542191 134542330 -108122023 - MIR SINE MIR -111 151 6 224 233 151 0 chr1 134542328 134542401 -108121952 - MIR SINE MIR -78 184 101 * 345 311 83 23 chr1 134542653 134542785 -108121568 + L2 LINE L2 3133 3272 0 1930 165 0 0 chr1 134543110 134543407 -108120946 - AluJb SINE Alu -15 297 1 428 241 204 0 chr1 134543578 134543715 -108120638 + MIR3 SINE MIR 42 206 -2 189 149 21 64 chr1 134544276 134544323 -108120030 + MIR SINE MIR 162 206 -56 2319 115 0 0 chr1 134544408 134544720 -108119633 + AluSx SINE Alu 1 312 0 2757 194 57 41 chr1 134546301 134547211 -108117142 - L1MD1 LINE L1 0 6242 5348 2331 91 0 0 chr1 134547211 134547509 -108116844 - AluSg SINE Alu -12 298 1 2757 194 57 41 chr1 134547509 134547696 -108116657 - L1MD1 LINE L1 -894 5348 5165 2233 85 7 3 chr1 134547696 134547989 -108116364 - AluSx SINE Alu -17 295 2 2757 194 57 41 chr1 134547989 134548151 -108116202 - L1MD1 LINE L1 -1077 5165 5007 2362 122 0 0 chr1 134548151 134548463 -108115890 - AluSx SINE Alu 0 312 1 2757 194 57 41 chr1 134548463 134548947 -108115406 - L1MD1 LINE L1 -1235 5007 4318 568 200 33 33 chr1 134548959 134549079 -108115274 - FLAM_A SINE Alu -13 120 1 710 273 65 76 chr1 134549157 134549408 -108114945 - L1ME LINE L1 -4876 1206 954 1652 124 70 12 chr1 134549408 134549667 -108114686 - AluSx SINE Alu -14 298 25 710 273 65 76 chr1 134549667 134549733 -108114620 - L1ME LINE L1 -5128 954 889 2078 126 13 0 chr1 134549733 134550034 -108114319 - AluSx SINE Alu -7 305 1 710 273 65 76 chr1 134550034 134550713 -108113640 - L1ME LINE L1 -5193 889 275 248 247 0 37 chr1 134550916 134550997 -108113356 - L1ME LINE L1 -5665 405 328 342 258 31 0 chr1 134551126 134551223 -108113130 - L1ME LINE L1 -5922 148 49 26 0 0 0 chr1 134551578 134551604 -108112749 + AT_rich Low_complexity Low_complexity 1 26 0 1868 107 72 4 chr1 134551959 134552222 -108112131 - AluSx SINE Alu -16 296 16 22 56 0 0 chr1 134552390 134552426 -108111927 + AT_rich Low_complexity Low_complexity 1 36 0 2398 83 0 0 chr1 134552527 134552829 -108111524 - AluY SINE Alu -9 302 1 443 291 51 8 chr1 134552991 134553108 -108111245 + L2 LINE L2 3151 3272 0 590 248 173 20 chr1 134553188 134553390 -108110963 - MIR SINE MIR -25 237 5 2348 98 0 3 chr1 134553573 134553870 -108110483 + AluSx SINE Alu 1 296 -16 928 145 21 5 chr1 134553914 134554100 -108110253 - L1MA7 LINE L1 -1614 4532 4344 5103 159 42 13 chr1 134554103 134555815 -108108538 + L1MA7 LINE L1 4537 6287 -4 24 53 0 0 chr1 134555812 134555850 -108108503 + AT_rich Low_complexity Low_complexity 1 38 0 * 25 0 0 0 chr1 134555914 134555939 -108108414 + AT_rich Low_complexity Low_complexity 1 25 0 837 175 0 7 chr1 134555939 134556076 -108108277 - AluJo SINE Alu -176 136 1 34 0 0 0 chr1 134556533 134556567 -108107786 + AT_rich Low_complexity Low_complexity 1 34 0 920 53 0 0 chr1 134556573 134556686 -108107667 - L1PA7 LINE L1 -2 6152 6040 405 114 29 29 chr1 134556686 134556749 -108107604 - AluS SINE Alu -14 287 222 185 305 38 9 chr1 134557685 134557790 -108106563 - L2 LINE L2 -4 3309 3202 638 40 0 0 chr1 134558233 134558308 -108106045 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1497 168 20 14 chr1 134559027 134559324 -108105029 - AluJb SINE Alu -5 307 9 1479 177 0 21 chr1 134559482 134559770 -108104583 - AluJo SINE Alu -24 288 7 1492 167 14 48 chr1 134559909 134560223 -108104130 - AluJo SINE Alu 0 304 1 26 0 0 0 chr1 134560230 134560256 -108104097 + AT_rich Low_complexity Low_complexity 1 26 0 925 198 0 0 chr1 134561253 134561410 -108102943 - FRAM SINE Alu -9 157 1 207 182 0 0 chr1 134561803 134561836 -108102517 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1408 163 7 28 chr1 134562175 134562457 -108101896 + AluJb SINE Alu 21 296 -16 589 215 32 57 chr1 134562460 134562618 -108101735 + AluJo/FRAM SINE Alu 137 290 -12 1828 116 0 0 chr1 134562980 134563239 -108101114 + AluSx SINE Alu 41 299 -13 836 182 27 32 chr1 134563449 134563619 -108100734 + AluJo SINE Alu 127 297 -15 1579 185 33 10 chr1 134563619 134563735 -108100618 + AluJo SINE Alu 3 115 -197 197 32 0 32 chr1 134563735 134563766 -108100587 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1579 185 33 10 chr1 134563766 134563951 -108100402 + AluJo SINE Alu 115 311 -1 836 182 27 32 chr1 134563951 134563967 -108100386 + AluJo SINE Alu 297 312 0 2027 128 0 0 chr1 134564115 134564420 -108099933 + AluSx SINE Alu 3 307 -5 556 171 22 153 chr1 134564741 134564969 -108099384 + MER4B-int LTR ERV1 5722 5919 -839 186 133 0 0 chr1 134565009 134565039 -108099314 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 1617 227 49 10 chr1 134565220 134565659 -108098694 + LTR56 LTR ERV1 12 437 0 316 219 81 109 chr1 134565659 134565803 -108098550 + L1ME2 LINE L1 5746 5884 -280 3911 138 15 62 chr1 134565803 134566528 -108097825 + LTR8 LTR ERV1 1 691 0 316 219 81 109 chr1 134566528 134566593 -108097760 + L1ME2 LINE L1 5884 5949 -215 395 233 52 26 chr1 134567073 134567189 -108097164 + Charlie4 DNA MER1_type 1839 1957 -4 2099 92 10 0 chr1 134567203 134567497 -108096856 + AluSx SINE Alu 8 304 -8 1517 6 0 0 chr1 134567907 134568071 -108096282 + U1 snRNA snRNA 1 164 -1 228 230 115 44 chr1 134568540 134568653 -108095700 + REP3 LTR ERV 1 121 -441 735 253 62 37 chr1 134568664 134568932 -108095421 + L1ME2 LINE L1 5801 6085 -99 518 294 78 39 chr1 134568985 134569240 -108095113 + HAL1b LINE L1 935 1199 -149 2136 221 37 104 chr1 134569880 134570604 -108093749 - LTR8 LTR ERV1 0 691 16 582 271 84 44 chr1 134570660 134570885 -108093468 + MIR SINE MIR 2 235 -27 2216 79 7 0 chr1 134571281 134571572 -108092781 + AluSx SINE Alu 3 295 -17 1025 254 43 77 chr1 134571605 134572135 -108092218 - MER39 LTR ERV1 0 707 1 893 168 6 34 chr1 134572208 134572387 -108091966 + AluSx SINE Alu 1 174 -138 607 62 0 0 chr1 134572463 134572543 -108091810 - HY3 scRNA scRNA -1 100 21 611 42 0 0 chr1 134573965 134574037 -108090316 - tRNA-Gln-CAG tRNA tRNA -3 72 1 288 77 0 0 chr1 134574316 134574355 -108089998 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1825 127 0 7 chr1 134574479 134574754 -108089599 - AluSx SINE Alu -39 273 1 362 248 76 9 chr1 134575080 134575185 -108089168 - MER20B DNA MER1_type -3 780 669 331 300 9 45 chr1 134575194 134575244 -108089109 + L1MCa LINE L1 2006 2056 -4370 1851 103 22 48 chr1 134575244 134575555 -108088798 - AluSx SINE Alu -9 303 1 331 300 9 45 chr1 134575555 134575614 -108088739 + L1MCa LINE L1 2056 2111 -4315 820 258 119 104 chr1 134575634 134575766 -108088587 - MER20B DNA MER1_type -290 493 364 682 168 30 15 chr1 134575766 134575897 -108088456 - FLAM_C SINE Alu 0 133 1 820 258 119 104 chr1 134575897 134575967 -108088386 - MER20B DNA MER1_type -419 364 297 1947 122 0 14 chr1 134575967 134576278 -108088075 + AluJb SINE Alu 1 307 0 820 258 119 104 chr1 134576278 134576463 -108087890 - MER20B DNA MER1_type -486 297 93 2876 96 73 2 chr1 134576463 134576899 -108087454 - L1PA11 LINE L1 0 6174 5708 820 258 119 104 chr1 134576899 134576988 -108087365 - MER20B DNA MER1_type -690 93 7 332 140 0 18 chr1 134577191 134577248 -108087105 + L2 LINE L2 3257 3312 -1 2191 110 3 3 chr1 134577342 134577652 -108086701 + AluSq SINE Alu 1 310 -3 664 125 0 0 chr1 134577662 134577750 -108086603 + AluS SINE Alu 3 90 -223 180 0 0 0 chr1 134578132 134578152 -108086201 + HSATII Satellite Satellite 120 139 -31 2037 109 6 26 chr1 134578331 134578642 -108085711 - L1PA11 LINE L1 -4 6170 5866 1910 264 120 16 chr1 134579238 134580007 -108084346 + L1ME2 LINE L1 5307 6155 -9 189 74 0 0 chr1 134580023 134580050 -108084303 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 286 161 145 0 chr1 134580510 134580572 -108083781 - tRNA-His-CAC tRNA tRNA -3 72 2 1052 25 0 0 chr1 134580997 134581119 -108083234 + AluY SINE Alu 2 123 -188 417 20 0 0 chr1 134581119 134581169 -108083184 + (GAAA)n Simple_repeat Simple_repeat 1 50 0 1298 58 6 0 chr1 134581172 134581346 -108083007 + AluY SINE Alu 127 301 -10 1383 138 5 0 chr1 134581357 134581581 -108082772 + AluJb SINE Alu 78 302 -10 342 190 0 0 chr1 134582204 134582262 -108082091 + tRNA-Asn-AAC tRNA tRNA 5 62 -15 363 323 36 54 chr1 134582588 134582917 -108081436 - L1MC4a LINE L1 -390 5780 5541 1118 149 6 0 chr1 134583010 134583191 -108081162 - AluJb SINE Alu -48 264 83 281 131 16 0 chr1 134583797 134583858 -108080495 + CT-rich Low_complexity Low_complexity 1 62 0 1621 211 31 44 chr1 134584534 134584985 -108079368 + MER65A LTR ERV1 1 445 0 1106 177 5 0 chr1 134585362 134585565 -108078788 - AluJo SINE Alu -24 288 85 523 250 82 138 chr1 134585879 134586322 -108078031 + L1M4c LINE L1 815 1206 -5178 225 0 0 0 chr1 134586322 134586347 -108078006 + (TA)n Simple_repeat Simple_repeat 2 26 0 523 250 82 138 chr1 134586347 134586607 -108077746 + L1M4c LINE L1 1206 1479 -4905 23 33 0 0 chr1 134587162 134587192 -108077161 + AT_rich Low_complexity Low_complexity 1 30 0 704 231 111 116 chr1 134587192 134587792 -108076561 - L1ME3A LINE L1 -36 6134 5536 2514 201 100 18 chr1 134588134 134588745 -108075608 - MER67B LTR ERV1 0 661 1 22 0 0 0 chr1 134588862 134588884 -108075469 + AT_rich Low_complexity Low_complexity 1 22 0 2183 107 0 3 chr1 134589141 134589451 -108074902 - AluSq SINE Alu -2 311 3 1296 209 36 36 chr1 134589594 134589962 -108074391 + MLT2B1 LTR ERVL 1 374 -40 210 37 0 0 chr1 134589962 134589989 -108074364 + (TG)n Simple_repeat Simple_repeat 2 28 0 1296 209 36 36 chr1 134589989 134590028 -108074325 + MLT2B1 LTR ERVL 374 411 -3 302 279 47 0 chr1 134590389 134590475 -108073878 - L1MC4 LINE L1 -1339 6703 6614 216 0 0 0 chr1 134590483 134590507 -108073846 + (GA)n Simple_repeat Simple_repeat 2 25 0 538 198 0 0 chr1 134590507 134590613 -108073740 - AluJo SINE Alu -205 107 2 4829 60 0 0 chr1 134590628 134591223 -108073130 + L1PA7 LINE L1 5550 6144 -10 470 264 36 41 chr1 134591358 134591449 -108072904 + L1M4c LINE L1 1742 1832 -4731 2023 120 3 3 chr1 134591449 134591750 -108072603 + AluSx SINE Alu 7 307 -5 470 264 36 41 chr1 134591750 134591878 -108072475 + L1M4c LINE L1 1832 1960 -4603 548 188 53 0 chr1 134591900 134592097 -108072256 + L1M4c LINE L1 2062 2309 -4254 265 289 48 0 chr1 134592126 134592230 -108072123 + L1MC/D LINE L1 5634 5742 -2066 2291 46 0 3 chr1 134592230 134592586 -108071767 - AluY SINE Alu 0 355 1 867 90 96 34 chr1 134593110 134593288 -108071065 - L1MA8 LINE L1 -4 6287 6099 2081 103 7 0 chr1 134593291 134593582 -108070771 - AluSc SINE Alu -16 293 1 954 206 14 18 chr1 134593639 134593858 -108070495 - AluJo SINE Alu -94 218 1 4712 207 17 28 chr1 134593862 134593982 -108070371 - L1P LINE L1 -2253 3893 3773 1842 155 0 0 chr1 134593982 134594279 -108070074 - AluSx SINE Alu -9 303 7 4712 207 17 28 chr1 134594279 134594566 -108069787 - L1P LINE L1 -2373 3773 3484 1646 173 3 26 chr1 134594566 134594878 -108069475 - AluJb SINE Alu -7 305 1 4712 207 17 28 chr1 134594878 134595617 -108068736 - L1P LINE L1 -2662 3484 2759 5132 127 24 12 chr1 134595622 134596427 -108067926 + L1PA15 LINE L1 5344 6157 -8 315 239 62 35 chr1 134596432 134596545 -108067808 + L1M4c LINE L1 2367 2482 -4081 1637 173 0 10 chr1 134596614 134596903 -108067450 + AluJb SINE Alu 9 294 -18 1174 165 21 5 chr1 134597047 134597241 -108067112 + AluJo SINE Alu 85 281 -31 215 59 0 29 chr1 134597277 134597311 -108067042 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr1 134597488 134597516 -108066837 + AT_rich Low_complexity Low_complexity 1 28 0 1899 80 26 70 chr1 134597651 134597963 -108066390 + AluSq SINE Alu 1 298 -15 1529 88 13 9 chr1 134599440 134599666 -108064687 - AluSq SINE Alu -6 307 81 1032 177 0 76 chr1 134599704 134599767 -108064586 + MER20 DNA MER1_type 1 67 -152 1644 148 60 0 chr1 134599767 134600050 -108064303 - AluJb SINE Alu -12 300 1 1032 177 0 76 chr1 134600050 134600223 -108064130 + MER20 DNA MER1_type 67 219 0 780 164 8 15 chr1 134601125 134601259 -108063094 + FLAM_C SINE Alu 1 133 0 2507 101 6 43 chr1 134601386 134602099 -108062254 - SVA Other Other -575 945 483 1208 61 0 57 chr1 134602117 134602363 -108061990 - SVA Other Other -520 866 635 5663 64 21 59 chr1 134602391 134603291 -108061062 - SVA Other Other -520 866 1 1333 206 36 0 chr1 134603394 134603646 -108060707 + MIR SINE MIR 1 261 -1 425 330 94 10 chr1 134603696 134603984 -108060369 - L2 LINE L2 -1452 1862 1551 1026 120 33 0 chr1 134603989 134604139 -108060214 + L1M3f LINE L1 3 157 -5171 451 266 58 45 chr1 134805149 134805303 -107859050 + MIR SINE MIR 61 216 -46 2172 121 0 0 chr1 134805453 134805758 -107858595 + AluSx SINE Alu 1 305 -7 2410 77 3 0 chr1 134805758 134806121 -107858232 + AluY SINE Alu 1 364 0 508 241 71 47 chr1 134806124 134806294 -107858059 - MER5B DNA MER1_type -3 175 2 666 246 46 17 chr1 134806397 134806572 -107857781 + MER5A DNA MER1_type 3 182 -7 538 252 101 0 chr1 134806582 134806721 -107857632 + MER5A DNA MER1_type 1 153 -36 270 337 55 25 chr1 134807031 134807194 -107857159 - MIR SINE MIR -8 254 87 1768 146 0 17 chr1 134808911 134809206 -107855147 - AluJo SINE Alu -22 290 1 303 292 86 47 chr1 134809449 134809682 -107854671 - L1ME4a LINE L1 -245 5876 5635 291 316 45 8 chr1 134810152 134810285 -107854068 + MIR3 SINE MIR 3 140 -68 297 197 145 0 chr1 134811243 134811319 -107853034 + MIR SINE MIR 62 148 -60 32 0 0 0 chr1 134813473 134813505 -107850848 + GC_rich Low_complexity Low_complexity 1 32 0 215 265 0 0 chr1 134813667 134813716 -107850637 + (TAA)n Simple_repeat Simple_repeat 2 50 0 252 280 83 45 chr1 134813814 134813946 -107850407 - MIR3 SINE MIR -65 143 7 689 214 68 57 chr1 134814848 134815011 -107849342 + MIR SINE MIR 2 170 -92 1887 77 0 100 chr1 134815011 134815347 -107849006 + AluSc SINE Alu 1 305 0 689 214 68 57 chr1 134815347 134815374 -107848979 + MIR SINE MIR 170 195 -67 306 304 152 36 chr1 134815961 134816185 -107848168 + MIR SINE MIR 13 262 0 195 184 0 0 chr1 134817294 134817332 -107847021 + (ATG)n Simple_repeat Simple_repeat 2 39 0 321 313 0 36 chr1 134817364 134817476 -107846877 - MIR SINE MIR -51 211 104 686 283 36 1 chr1 134818414 134818615 -107845738 + MIR SINE MIR 46 252 -10 746 248 85 102 chr1 134818661 134819084 -107845269 + MLT1K LTR MaLR 171 586 -2 769 222 0 109 chr1 134819710 134819913 -107844440 - MER58A DNA MER1_type -2196 224 51 207 0 0 0 chr1 134819913 134819936 -107844417 + (GAA)n Simple_repeat Simple_repeat 2 24 0 769 222 0 109 chr1 134819936 134819980 -107844373 - MER58A DNA MER1_type -2369 51 4 240 346 0 0 chr1 134820016 134820097 -107844256 + MIR SINE MIR 150 230 -32 411 231 190 41 chr1 134820618 134820739 -107843614 - L2 LINE L2 0 3272 3134 888 336 92 18 chr1 134821005 134821404 -107842949 - L2 LINE L2 -559 2755 2312 1675 178 21 65 chr1 134821404 134821559 -107842794 + MLT1A1 LTR MaLR 1 161 -204 2279 86 3 0 chr1 134821559 134821863 -107842490 + AluSg SINE Alu 1 305 -5 1675 178 21 65 chr1 134821863 134822089 -107842264 + MLT1A1 LTR MaLR 161 365 0 888 336 92 18 chr1 134822089 134822180 -107842173 - L2 LINE L2 -1002 2312 2229 289 226 68 130 chr1 134822561 134822682 -107841671 + L2 LINE L2 3176 3289 -24 2072 85 7 4 chr1 134822682 134823007 -107841346 - AluSc SINE Alu 0 326 1 289 226 68 130 chr1 134823007 134823030 -107841323 + L2 LINE L2 3289 3312 -1 1049 247 101 13 chr1 134823572 134823949 -107840404 + LTR16A1 LTR ERVL 4 413 -44 184 423 0 0 chr1 134824121 134824218 -107840135 + MIR SINE MIR 58 154 -108 385 276 62 39 chr1 134824222 134824457 -107839896 + MIR SINE MIR 1 240 -22 1475 181 114 0 chr1 134824962 134824997 -107839356 + MER58B DNA MER1_type 2 32 -2388 330 26 0 0 chr1 134824997 134825036 -107839317 + (TG)n Simple_repeat Simple_repeat 1 39 0 1475 181 114 0 chr1 134825036 134825306 -107839047 + MER58B DNA MER1_type 32 341 0 1604 181 3 19 chr1 134825844 134826158 -107838195 + AluJo SINE Alu 1 309 -3 443 157 34 0 chr1 134826165 134826254 -107838099 + L1PB4 LINE L1 6058 6149 -7 217 301 92 20 chr1 134826817 134827013 -107837340 + L2 LINE L2 2827 3036 -236 524 330 11 11 chr1 134827491 134827682 -107836671 + LTR16A1 LTR ERVL 267 457 0 1747 129 15 4 chr1 134827726 134827998 -107836355 + AluJb SINE Alu 3 277 -35 340 266 83 9 chr1 134827999 134828108 -107836245 - L1MCa LINE L1 -4315 2111 1995 971 182 77 0 chr1 134828110 134828280 -107836073 - MER58A DNA MER1_type -41 183 1 220 253 21 17 chr1 134828298 134828370 -107835983 - MIR SINE MIR -79 129 57 1477 124 0 9 chr1 134829076 134829293 -107835060 - AluJb SINE Alu -13 299 85 800 232 170 26 chr1 134829295 134829718 -107834635 - L1ME4a LINE L1 -16 6105 5622 477 244 115 26 chr1 134829802 134829958 -107834395 + MIR SINE MIR 13 182 -80 871 297 142 7 chr1 134829959 134830383 -107833970 + L2 LINE L2 2809 3289 -24 1489 175 80 3 chr1 134830628 134830914 -107833439 - AluSx SINE Alu -2 310 3 1829 154 3 3 chr1 134830921 134831214 -107833139 - AluJb SINE Alu -15 297 5 2082 124 3 0 chr1 134831732 134832031 -107832322 - AluSg SINE Alu -10 300 1 358 325 103 72 chr1 134832065 134832257 -107832096 + L2 LINE L2 2914 3123 -149 239 0 32 0 chr1 134832257 134832288 -107832065 + (TTA)n Simple_repeat Simple_repeat 2 33 0 358 325 103 72 chr1 134832288 134832443 -107831910 + L2 LINE L2 3123 3272 0 306 0 0 0 chr1 134833412 134833446 -107830907 + (TTA)n Simple_repeat Simple_repeat 3 36 0 328 245 47 28 chr1 134834222 134834328 -107830025 + MER5A DNA MER1_type 20 127 -62 219 150 0 50 chr1 134834604 134834664 -107829689 + (TTTTTA)n Simple_repeat Simple_repeat 4 60 0 2101 107 3 7 chr1 134834782 134835081 -107829272 - AluSx SINE Alu -14 298 1 326 115 115 0 chr1 134835412 134835473 -107828880 + L1PA16 LINE L1 6092 6159 -7 287 216 108 54 chr1 134835474 134835622 -107828731 + L1MC5 LINE L1 7774 7929 -32 236 244 0 0 chr1 134835637 134835682 -107828671 + polypurine Low_complexity Low_complexity 2 46 0 418 215 11 0 chr1 134836143 134836236 -107828117 + L1ME3A LINE L1 5862 5955 -215 429 189 25 49 chr1 134836465 134836587 -107827766 - L1ME4a LINE L1 -17 6104 5986 676 259 86 30 chr1 134836609 134836806 -107827547 + MIR SINE MIR 9 216 -46 2137 112 5 4 chr1 134837153 134837506 -107826847 - L1ME4a LINE L1 -743 5403 5077 784 123 0 0 chr1 134837608 134837730 -107826623 - L1P LINE L1 -1689 4457 4336 * 5728 85 11 3 chr1 134837729 134838493 -107825860 + L1PA11 LINE L1 5403 6172 -2 4398 250 88 19 chr1 134838611 134838981 -107825372 - L1MB1 LINE L1 -28 6161 5818 948 132 0 0 chr1 134838981 134839133 -107825220 + (TA)n Simple_repeat Simple_repeat 1 152 0 4398 250 88 19 chr1 134839133 134840925 -107823428 - L1MB1 LINE L1 -371 5818 3831 272 154 58 0 chr1 134840944 134840996 -107823357 - L1MB1 LINE L1 -2477 3669 3615 893 264 99 62 chr1 134841360 134841815 -107822538 - MLT1J LTR MaLR -37 474 3 480 347 50 14 chr1 134842209 134842431 -107821922 - MIR SINE MIR -25 237 8 190 336 148 0 chr1 134842421 134842568 -107821785 - MIR3 SINE MIR -65 143 3 * 31 26 0 0 chr1 134843026 134843064 -107821289 + AT_rich Low_complexity Low_complexity 1 38 0 231 164 18 73 chr1 134843557 134843612 -107820741 + L2 LINE L2 3262 3313 0 484 281 125 10 chr1 134843861 134844053 -107820300 + MIR SINE MIR 48 261 -1 22 0 0 0 chr1 134844394 134844416 -107819937 + AT_rich Low_complexity Low_complexity 1 22 0 446 221 19 19 chr1 134844492 134844596 -107819757 - MER90 LTR ERV1 0 614 511 1214 138 5 0 chr1 134844598 134844787 -107819566 - L1MC3 LINE L1 -188 7597 7408 2136 200 19 21 chr1 134844787 134844925 -107819428 - MER90 LTR ERV1 -111 464 327 2422 198 58 8 chr1 134844925 134845406 -107818947 - MLT1D LTR MaLR 0 505 1 2136 200 19 21 chr1 134845406 134845732 -107818621 - MER90 LTR ERV1 -248 327 1 562 291 63 18 chr1 134845732 134846059 -107818294 - L2 LINE L2 -172 3141 2392 5530 154 35 48 chr1 134846091 134846474 -107817879 - L1MC3 LINE L1 -12 7773 7386 2416 60 0 10 chr1 134846474 134846788 -107817565 - AluY SINE Alu 0 311 1 5530 154 35 48 chr1 134846788 134847287 -107817066 - L1MC3 LINE L1 -399 7386 6907 1729 144 6 81 chr1 134847287 134847621 -107816732 - AluJb SINE Alu -3 309 1 5530 154 35 48 chr1 134847621 134847856 -107816497 - L1MC3 LINE L1 -878 6907 6670 1666 256 135 38 chr1 134847856 134848543 -107815810 - L2 LINE L2 -952 2362 1609 564 291 113 4 chr1 134848544 134848774 -107815579 - MIR SINE MIR 0 262 8 221 275 175 0 chr1 134849053 134849133 -107815220 - L2 LINE L2 0 3313 3220 563 323 64 23 chr1 134849316 134849582 -107814771 - Charlie8 DNA MER1_type -2140 277 1 227 303 13 26 chr1 134850114 134850190 -107814163 - MIR SINE MIR -79 183 109 524 216 50 92 chr1 134850280 134850420 -107813933 + MER113 DNA MER1_type? 1 145 -376 1950 144 7 0 chr1 134850420 134850719 -107813634 + AluSx SINE Alu 1 301 -11 524 216 50 92 chr1 134850719 134850733 -107813620 + MER113 DNA MER1_type? 145 158 -363 2193 99 0 0 chr1 134850733 134851025 -107813328 + AluSg SINE Alu 9 300 -10 524 216 50 92 chr1 134851025 134851087 -107813266 + MER113 DNA MER1_type? 158 209 -312 357 234 27 36 chr1 134851570 134851681 -107812672 - LTR67 LTR ERVL -16 541 432 423 0 0 0 chr1 134852115 134852162 -107812191 + (CA)n Simple_repeat Simple_repeat 1 47 0 366 208 121 47 chr1 134852198 134852347 -107812006 + MER112 DNA MER1_type 97 256 -4 2303 73 0 10 chr1 134852349 134852663 -107811690 + AluY SINE Alu 1 311 0 617 324 5 38 chr1 134852898 134853111 -107811242 - MIR SINE MIR -25 237 32 494 309 63 55 chr1 134855007 134855632 -107808721 - L2 LINE L2 -1 3312 2650 535 241 77 82 chr1 134855754 134855974 -107808379 + MIR SINE MIR 35 253 -9 230 135 0 0 chr1 134857280 134857317 -107807036 - MIR SINE MIR -65 143 107 195 343 20 20 chr1 134857714 134857816 -107806537 + MIR SINE MIR 82 183 -79 1038 210 56 113 chr1 134857975 134858442 -107805911 + MLT1H LTR MaLR 110 549 0 623 275 122 22 chr1 134858585 134858807 -107805546 + MIR SINE MIR 9 252 -10 195 129 0 0 chr1 134858963 134858994 -107805359 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 7031 52 1 1 chr1 134859810 134860744 -107803609 - L1PA5 LINE L1 -3536 2610 1677 1338 72 5 5 chr1 134860734 134860928 -107803425 + L1PA5 LINE L1 2599 2792 -3354 * 18478 44 0 12 chr1 134861028 134864116 -107800237 + L1PA5 LINE L1 3075 6154 0 450 0 0 0 chr1 134864683 134864733 -107799620 + (TA)n Simple_repeat Simple_repeat 2 51 0 253 222 0 16 chr1 134865079 134865142 -107799211 - MLT1K LTR MaLR -339 249 188 1394 220 62 82 chr1 134865231 134865745 -107798608 + MLT1F1 LTR MaLR 2 530 -37 353 113 0 0 chr1 134865772 134865825 -107798528 + MLT1F1 LTR MaLR 515 567 0 534 265 94 12 chr1 134865844 134866014 -107798339 + MIR SINE MIR 29 212 -50 489 34 0 0 chr1 134867209 134867268 -107797085 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1961 161 0 3 chr1 134868363 134868662 -107795691 - AluJo SINE Alu -14 298 1 2428 231 52 20 chr1 134868862 134869529 -107794824 - L2 LINE L2 -911 2403 1712 2362 75 10 0 chr1 134869529 134869824 -107794529 - AluY SINE Alu -13 298 1 2428 231 52 20 chr1 134869824 134869850 -107794503 - L2 LINE L2 -1602 1712 1688 279 326 35 41 chr1 134869895 134869991 -107794362 - L2 LINE L2 -1017 2297 2201 1888 150 17 10 chr1 134869991 134870291 -107794062 + AluJb SINE Alu 1 302 -10 279 326 35 41 chr1 134870291 134870366 -107793987 - L2 LINE L2 -1113 2201 2127 219 341 80 0 chr1 134870483 134870571 -107793782 - L2 LINE L2 -1223 2091 1997 223 183 67 0 chr1 134870812 134870872 -107793481 - L2 LINE L2 -1230 2084 2021 277 272 87 33 chr1 134870930 134871022 -107793331 - MIR SINE MIR -8 254 158 454 275 22 0 chr1 134871098 134871236 -107793117 - MER117 DNA MER1_type -44 153 13 216 0 0 0 chr1 134871254 134871278 -107793075 + (T)n Simple_repeat Simple_repeat 1 24 0 2444 54 3 100 chr1 134871475 134872053 -107792300 - L1PA5 LINE L1 0 6154 5633 22 35 0 0 chr1 134872140 134872169 -107792184 + AT_rich Low_complexity Low_complexity 1 29 0 1833 165 21 12 chr1 134872515 134872855 -107791498 + MER2 DNA MER2_type 2 344 0 21 36 0 0 chr1 134873016 134873044 -107791309 + AT_rich Low_complexity Low_complexity 1 28 0 231 305 61 0 chr1 134873468 134873550 -107790803 - MIR SINE MIR -6 256 170 866 178 181 55 chr1 134874056 134874345 -107790008 + MLT1A2 LTR MaLR 24 349 -16 2525 103 0 14 chr1 134874345 134874396 -107789957 + THE1B LTR MaLR 1 51 -313 2650 92 51 65 chr1 134874396 134874887 -107789466 + LTR19A LTR ERV1 1 484 -2 2525 103 0 14 chr1 134874887 134875204 -107789149 + THE1B LTR MaLR 51 364 0 1783 160 18 3 chr1 134875542 134875824 -107788529 - AluJb SINE Alu -26 286 1 2347 88 7 3 chr1 134875830 134876138 -107788215 - AluY SINE Alu 0 311 3 781 129 0 8 chr1 134876329 134876453 -107787900 - L1PA7 LINE L1 0 6154 6032 1662 174 43 63 chr1 134876539 134876755 -107787598 - MLT1B LTR MaLR 0 390 184 219 36 0 0 chr1 134876755 134876783 -107787570 + (GA)n Simple_repeat Simple_repeat 1 28 0 1662 174 43 63 chr1 134876783 134876962 -107787391 - MLT1B LTR MaLR -206 184 3 803 203 0 0 chr1 134878770 134878918 -107785435 + FRAM SINE Alu 1 148 -18 323 96 19 0 chr1 134878918 134878970 -107785383 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 471 78 69 10 chr1 134879074 134879176 -107785177 + GA-rich Low_complexity Low_complexity 3 110 0 2361 58 0 0 chr1 134879449 134879743 -107784610 + L1PA5 LINE L1 5860 6153 -1 547 255 44 25 chr1 134879820 134880024 -107784329 + L1ME2 LINE L1 5824 6031 -133 299 188 14 0 chr1 134880037 134880106 -107784247 + L1ME2 LINE L1 6085 6154 -10 189 107 0 0 chr1 134880121 134880149 -107784204 + (A)n Simple_repeat Simple_repeat 1 28 0 713 195 47 18 chr1 134880204 134880396 -107783957 - L1MC/D LINE L1 -656 5518 5328 2175 104 0 49 chr1 134880396 134880723 -107783630 - AluSx SINE Alu -1 311 1 713 195 47 18 chr1 134880723 134880739 -107783614 - L1MC/D LINE L1 -846 5328 5314 240 35 0 0 chr1 134880755 134880784 -107783569 + (CA)n Simple_repeat Simple_repeat 2 30 0 635 281 72 19 chr1 134880786 134881163 -107783190 - L1MC/D LINE L1 -924 5222 4826 395 242 38 57 chr1 134881241 134881452 -107782901 - L1ME LINE L1 -305 5816 5610 2197 86 0 3 chr1 134881457 134881748 -107782605 - AluSg SINE Alu -20 290 1 618 177 35 0 chr1 134881782 134881895 -107782458 + AluJ SINE Alu 1 117 -185 591 153 18 9 chr1 134881897 134882008 -107782345 + AluJ SINE Alu 189 300 -12 254 265 76 54 chr1 134882065 134882288 -107782065 - L1ME LINE L1 -2289 5519 5292 379 99 14 14 chr1 134882519 134882590 -107781763 + (CCCCCT)n Simple_repeat Simple_repeat 6 76 0 1316 263 86 29 chr1 134883658 134884111 -107780242 - L2 LINE L2 0 3313 2835 1622 185 0 14 chr1 134884472 134884764 -107779589 + AluJo SINE Alu 4 291 -21 278 234 75 43 chr1 134885996 134886090 -107778263 - MIR SINE MIR -67 141 45 591 289 111 68 chr1 134892290 134892938 -107771415 - L1MC5 LINE L1 -26 7935 7260 395 244 141 16 chr1 134893059 134893301 -107771052 - L1MC5 LINE L1 -733 7228 6957 241 265 44 77 chr1 134893363 134893544 -107770809 - L1MC4 LINE L1 -1017 7025 6851 5277 172 72 16 chr1 134893580 134894871 -107769482 - Charlie1a DNA MER1_type 0 1455 92 1560 213 65 7 chr1 134894878 134895295 -107769058 - MER41B LTR ERV1 -10 599 191 267 203 253 13 chr1 134895340 134895419 -107768934 - Charlie1a DNA MER1_type -1356 99 2 312 352 62 28 chr1 134895602 134895781 -107768572 - HAL1b LINE L1 -1163 185 1 2380 150 10 0 chr1 134895825 134896224 -107768129 - MER57A LTR ERV1 0 403 1 769 78 0 0 chr1 134896354 134896457 -107767896 - AluY SINE Alu -13 298 196 305 159 48 0 chr1 134896811 134896887 -107767466 - L1ME3A LINE L1 -270 6691 6613 284 222 0 0 chr1 134896948 134897011 -107767342 - L1ME3A LINE L1 -462 6503 6441 1146 218 103 31 chr1 134897011 134897401 -107766952 - MLT1C LTR MaLR 0 467 1 376 237 140 0 chr1 134897401 134897515 -107766838 - L1ME3A LINE L1 -520 6445 6316 2715 205 29 25 chr1 134897555 134898248 -107766105 - L1MC4 LINE L1 -13 8029 7334 1812 279 31 48 chr1 134898266 134899213 -107765140 - L1ME LINE L1 -5120 950 20 279 250 22 0 chr1 134899922 134900014 -107764339 - L1MC4 LINE L1 -6 8036 7943 261 359 0 41 chr1 134900389 134900534 -107763819 + L2 LINE L2 2986 3124 -189 2838 195 45 72 chr1 134900561 134900926 -107763427 - L1ME3A LINE L1 -1951 4990 4617 776 141 8 16 chr1 134900926 134901054 -107763299 - FLAM_C SINE Alu -5 128 2 2838 195 45 72 chr1 134901054 134901661 -107762692 - L1ME3A LINE L1 -2324 4617 4044 516 175 12 38 chr1 134901661 134901821 -107762532 + CT-rich Low_complexity Low_complexity 4 159 0 754 225 101 3 chr1 134901841 134902148 -107762205 - L1ME3A LINE L1 -2887 4054 3718 * 1778 255 90 46 chr1 134902142 134903678 -107760675 - L1MCc LINE L1 -4034 3088 1216 2296 98 0 22 chr1 134903678 134903994 -107760359 - AluSq SINE Alu -4 309 1 1778 255 90 46 chr1 134903994 134904423 -107759930 - L1MCc LINE L1 -5906 1216 807 301 289 21 21 chr1 134904684 134904781 -107759572 - L1MCc LINE L1 -5984 439 343 229 250 29 0 chr1 134904949 134905017 -107759336 - L1MCa LINE L1 -6283 143 74 22 0 0 0 chr1 134905002 134905024 -107759329 + AT_rich Low_complexity Low_complexity 1 22 0 * 292 221 163 12 chr1 134905139 134905225 -107759128 - MER94 DNA DNA -34 100 2 708 243 53 92 chr1 134905380 134905621 -107758732 + L1MC5 LINE L1 7517 7766 -195 2252 109 3 0 chr1 134905621 134905924 -107758429 - AluSp SINE Alu -9 304 1 708 243 53 92 chr1 134905924 134906102 -107758251 + L1MC5 LINE L1 7766 7921 -40 1584 166 4 0 chr1 134906102 134906355 -107757998 - AluJo SINE Alu -20 292 39 708 243 53 92 chr1 134906355 134906367 -107757986 + L1MC5 LINE L1 7921 7932 -29 213 292 67 33 chr1 134906811 134906931 -107757422 + L2 LINE L2 3190 3313 0 4212 123 41 2 chr1 134908062 134908671 -107755682 - MER41B LTR ERV1 -2 633 1 202 283 50 17 chr1 134909278 134909338 -107755015 - L2 LINE L2 -5 3267 3206 2284 177 100 16 chr1 134909380 134909832 -107754521 - MLT1D LTR MaLR -7 498 9 291 280 210 19 chr1 134909852 134910009 -107754344 + MIR SINE MIR 64 250 -12 247 369 54 9 chr1 134910036 134910147 -107754206 - L2 LINE L2 -67 3205 3090 2399 82 7 0 chr1 134910340 134910643 -107753710 - AluSg1 SINE Alu -4 305 1 1807 177 3 13 chr1 134911001 134911311 -107753042 - AluJb SINE Alu -5 307 1 615 211 295 9 chr1 134911413 134911640 -107752713 + L2 LINE L2 1939 2230 -1084 1929 208 59 16 chr1 134911659 134912102 -107752251 - MLT1D LTR MaLR -43 462 1 2863 268 47 18 chr1 134912106 134913143 -107751210 + L2 LINE L2 2234 3313 0 492 191 135 0 chr1 134913644 134913733 -107750620 - FLAM_A SINE Alu -38 104 4 693 229 128 46 chr1 134913805 134914150 -107750203 + L1MC5 LINE L1 6749 7121 -840 2601 187 98 33 chr1 134914224 134915213 -107749140 - L1MC4 LINE L1 -140 7902 6695 198 118 0 0 chr1 134915214 134915248 -107749105 + (TG)n Simple_repeat Simple_repeat 2 35 0 364 276 38 43 chr1 134915250 134915460 -107748893 + L1MC5 LINE L1 7537 7745 -216 201 147 0 0 chr1 134915533 134915567 -107748786 + (CATA)n Simple_repeat Simple_repeat 3 36 0 485 246 145 42 chr1 134917143 134917504 -107746849 - L1ME4a LINE L1 -140 5981 5579 1635 178 77 30 chr1 134917655 134917993 -107746360 + MLT1A1 LTR MaLR 1 354 -11 386 244 44 59 chr1 134918003 134918138 -107746215 - MIR SINE MIR -96 166 34 1268 137 0 0 chr1 134918140 134918322 -107746031 - AluSx SINE Alu 0 312 131 225 109 43 0 chr1 134918344 134918390 -107745963 - L1MC3 LINE L1 -1139 6646 6599 1125 124 0 0 chr1 134918404 134918641 -107745712 + (TA)n Simple_repeat Simple_repeat 1 237 0 864 152 8 0 chr1 134918659 134918791 -107745562 - AluSx SINE Alu -180 133 1 446 212 441 5 chr1 134918971 134919193 -107745160 + L2 LINE L2 2157 2475 -839 2049 139 7 0 chr1 134919644 134919946 -107744407 - AluSx SINE Alu -8 304 1 493 239 0 0 chr1 134920351 134920443 -107743910 + MER81 DNA DNA 22 113 -1 252 178 22 0 chr1 134921704 134921749 -107742604 - MIR SINE MIR -1 261 216 1259 251 102 18 chr1 134921759 134922201 -107742152 + L1MB8 LINE L1 5380 5858 -320 326 225 0 14 chr1 134922201 134922272 -107742081 - MIR SINE MIR -72 190 121 425 254 30 119 chr1 134922645 134922846 -107741507 - MIR SINE MIR -27 235 53 268 209 27 55 chr1 134923554 134923664 -107740689 + L2 LINE L2 2594 2700 -614 274 347 46 92 chr1 134923685 134924074 -107740279 + L2 LINE L2 2897 3267 -5 790 139 0 35 chr1 134924138 134924253 -107740100 + FLAM_C SINE Alu 5 115 -28 309 51 0 0 chr1 134924253 134924292 -107740061 + (CA)n Simple_repeat Simple_repeat 2 40 0 2362 93 0 0 chr1 134924655 134924957 -107739396 - AluSg1 SINE Alu -7 302 1 1374 201 50 3 chr1 134924974 134925257 -107739096 + AluJb SINE Alu 1 296 -16 2267 173 15 11 chr1 134925327 134925756 -107738597 - L1MC2 LINE L1 -73 7704 6137 205 300 132 29 chr1 134925798 134926078 -107738275 + L2 LINE L2 2366 2674 -640 376 186 20 39 chr1 134926571 134926673 -107737680 - MLT1E LTR MaLR -41 552 453 225 94 0 0 chr1 134927838 134927870 -107736483 + (T)n Simple_repeat Simple_repeat 1 32 0 276 306 32 38 chr1 134928513 134928635 -107735718 - MIR SINE MIR -63 145 42 231 333 73 8 chr1 134928630 134928753 -107735600 + L2 LINE L2 3183 3313 0 * 1998 169 0 0 chr1 134930450 134930752 -107733601 - AluSx SINE Alu -10 302 1 268 173 0 19 chr1 134930860 134930912 -107733441 - MER69 DNA AcHobo 0 2526 2476 * 823 294 37 15 chr1 134930911 134931183 -107733170 - MER69 DNA AcHobo -1823 703 426 513 249 150 0 chr1 134931704 134931877 -107732476 + MIR SINE MIR 64 262 0 211 254 264 55 chr1 134932158 134932465 -107731888 + L2 LINE L2 2864 3234 -79 354 229 0 0 chr1 134932477 134932547 -107731806 + MER106B DNA MER1_type 3 72 -987 23 24 0 24 chr1 134932551 134932579 -107731774 + AT_rich Low_complexity Low_complexity 1 29 -11 2000 138 0 3 chr1 134932579 134932869 -107731484 + AluSx SINE Alu 1 289 -23 23 24 0 24 chr1 134932869 134932881 -107731472 + AT_rich Low_complexity Low_complexity 29 40 0 470 184 163 28 chr1 134932899 134933040 -107731313 + MER106B DNA MER1_type 892 1051 -8 361 318 53 30 chr1 134933106 134933238 -107731115 - MIR3 SINE MIR -67 141 7 1561 225 34 2 chr1 134933492 134933926 -107730427 - MER119 DNA MER1_type -35 548 4 632 196 137 0 chr1 134934330 134934483 -107729870 - MLT1D LTR MaLR 0 505 332 2871 151 23 6 chr1 134934512 134934983 -107729370 + MER66B LTR ERV1 8 486 0 593 248 139 50 chr1 134934984 134935286 -107729067 - MLT1D LTR MaLR -176 329 1 257 335 61 2 chr1 134935791 134935992 -107728361 + L3 LINE CR1 1161 1418 -159 412 304 35 0 chr1 134936043 134936158 -107728195 + L2 LINE L2 3153 3271 -1 1873 154 0 3 chr1 134936308 134936593 -107727760 - AluJb SINE Alu -28 284 1 423 221 139 9 chr1 134936595 134936722 -107727631 - MIR SINE MIR -61 147 57 1650 176 15 106 chr1 134938208 134938605 -107725748 - MLT1A1 LTR MaLR -4 361 1 2108 86 0 73 chr1 134939034 134939348 -107725005 - AluSq SINE Alu -22 291 1 1425 199 33 3 chr1 134939540 134939847 -107724506 - MER33 DNA MER1_type 0 324 9 314 256 144 0 chr1 134939859 134939949 -107724404 + L2 LINE L2 3189 3291 -22 241 271 23 93 chr1 134940090 134940219 -107724134 + L2 LINE L2 3187 3306 -7 * 479 261 63 0 chr1 134940188 134940299 -107724054 - L2 LINE L2 0 3272 3155 254 326 96 17 chr1 134940445 134940623 -107723730 + L2 LINE L2 2875 3066 -247 196 283 0 17 chr1 134940756 134940816 -107723537 + L2 LINE L2 3255 3313 0 2292 212 102 34 chr1 134941846 134941907 -107722446 - L1ME1 LINE L1 -30 6136 6081 2687 106 17 3 chr1 134941907 134942266 -107722087 - THE1B LTR MaLR 0 364 1 2292 212 102 34 chr1 134942266 134942781 -107721572 - L1ME1 LINE L1 -85 6081 5459 10598 36 7 0 chr1 134942781 134944757 -107719596 - L1PA5 LINE L1 -8 6146 4161 2292 212 102 34 chr1 134944757 134944906 -107719447 - L1ME1 LINE L1 -707 5459 5322 321 169 0 0 chr1 134944912 134944971 -107719382 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 2866 211 45 55 chr1 134944978 134945044 -107719309 - L1ME1 LINE L1 -899 5247 5182 2548 166 77 0 chr1 134945044 134945472 -107718881 - LOR1b LTR ERV1 0 461 1 2866 211 45 55 chr1 134945472 134946323 -107718030 - L1ME1 LINE L1 -964 5182 4339 2918 139 89 15 chr1 134946460 134946921 -107717432 - LTR42 LTR ERVL 0 495 1 341 117 0 91 chr1 134947212 134947231 -107717122 - MER57A LTR ERV1 0 403 384 2876 3 0 0 chr1 134947231 134947537 -107716816 + AluYa5 SINE Alu 1 306 -5 341 117 0 91 chr1 134947537 134947594 -107716759 - MER57A LTR ERV1 -19 384 334 7407 163 36 8 chr1 134947644 134949327 -107715026 - L1PB2 LINE L1 -1 6150 4377 189 0 0 0 chr1 134949327 134949348 -107715005 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 7407 163 36 8 chr1 134949348 134949979 -107714374 - L1PB2 LINE L1 -1774 4377 3765 2253 137 12 0 chr1 134949979 134950308 -107714045 - MER57A LTR ERV1 -70 333 1 25 0 0 0 chr1 134950440 134950465 -107713888 + AT_rich Low_complexity Low_complexity 1 25 0 408 341 40 6 chr1 134950656 134950829 -107713524 - L1MEd LINE L1 -5494 625 447 227 196 0 0 chr1 134951185 134951231 -107713122 - L1MEd LINE L1 -5984 135 90 331 243 29 39 chr1 134955228 134955335 -107709018 + MER5B DNA MER1_type 15 131 -58 1346 244 63 29 chr1 134955673 134956420 -107707933 - L1ME3 LINE L1 -205 5940 5165 634 118 0 0 chr1 134956420 134956505 -107707848 - AluJ/FLAM SINE Alu -227 85 1 377 216 14 74 chr1 134956631 134956779 -107707574 - L1MC5 LINE L1 -770 7191 7053 438 160 38 0 chr1 134956783 134956889 -107707464 + CT-rich Low_complexity Low_complexity 2 111 0 242 204 19 0 chr1 134956889 134956943 -107707410 - L1MC5 LINE L1 -943 7018 6964 433 231 7 49 chr1 134956951 134957094 -107707259 - L1MC4 LINE L1 -1064 6978 6842 469 361 20 33 chr1 134957137 134957439 -107706914 - LTR16C LTR ERVL 0 491 194 701 251 116 66 chr1 134957608 134958473 -107705880 - L1ME3 LINE L1 -1428 4701 3794 703 296 60 24 chr1 134958835 134959580 -107704773 - L1ME3 LINE L1 -4604 1706 895 1079 225 67 83 chr1 134959612 134960132 -107704221 - L1MC4 LINE L1 -1 8041 7530 356 285 39 69 chr1 134960190 134960430 -107703923 - L1ME3 LINE L1 -5267 852 623 2489 60 0 7 chr1 134960430 134960732 -107703621 - AluY SINE Alu -11 300 1 356 285 39 69 chr1 134960732 134960824 -107703529 - L1ME3 LINE L1 -5496 623 530 25 31 0 0 chr1 134961098 134961130 -107703223 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr1 134961184 134961223 -107703130 + AT_rich Low_complexity Low_complexity 1 39 0 3712 136 12 11 chr1 134961411 134962058 -107702295 - L1PA13 LINE L1 0 6814 6167 14740 195 19 7 chr1 134962058 134965747 -107698606 - L1PA13 LINE L1 -1515 5282 1532 391 296 52 35 chr1 134966666 134966956 -107697397 - L1PA12 LINE L1 -6545 1040 8 1722 167 0 0 chr1 134968010 134968279 -107696074 - AluJb SINE Alu -14 298 30 327 321 143 14 chr1 134968961 134969248 -107695105 - MLT1K LTR MaLR -180 408 85 748 269 72 46 chr1 134970307 134970612 -107693741 - MLT1K LTR MaLR -119 469 157 577 327 33 70 chr1 134970783 134971113 -107693240 - L2 LINE L2 0 3272 2955 4490 50 0 4 chr1 134971696 134972252 -107692101 - MER41A LTR ERV1 0 554 1 2213 201 77 101 chr1 134972795 134973218 -107691135 + L1ME3A LINE L1 5192 5624 -546 2284 169 51 43 chr1 134973218 134973686 -107690667 - MER70A LTR ERVL 0 472 1 2213 201 77 101 chr1 134973686 134974044 -107690309 + L1ME3A LINE L1 5624 5947 -223 1975 116 22 0 chr1 134974044 134974344 -107690009 + AluSq SINE Alu 1 306 0 2213 201 77 101 chr1 134974344 134974554 -107689799 + L1ME3A LINE L1 5947 6161 -9 454 178 0 108 chr1 134974850 134974979 -107689374 - MLT2B1 LTR ERVL -6 514 400 3818 94 4 2 chr1 134974985 134975530 -107688823 - MER41A LTR ERV1 -8 546 1 1712 211 59 21 chr1 134975531 134975920 -107688433 - MLT2B1 LTR ERVL -116 404 1 192 77 0 0 chr1 134976810 134976836 -107687517 + (T)n Simple_repeat Simple_repeat 1 26 0 295 247 0 62 chr1 134976872 134976953 -107687400 - MIR SINE MIR -28 234 159 2000 247 34 30 chr1 134976954 134977488 -107686865 + MLT1F LTR MaLR 1 536 -6 217 208 21 0 chr1 134977510 134977558 -107686795 - MIR SINE MIR -108 154 106 2210 109 0 0 chr1 134977666 134977960 -107686393 - AluSc SINE Alu -15 294 1 227 345 0 3 chr1 134978876 134978995 -107685358 - L2 LINE L2 -4 3268 3112 693 313 80 27 chr1 134979229 134979529 -107684824 - L2 LINE L2 0 3272 2957 473 319 31 35 chr1 134979661 134979887 -107684466 - L2 LINE L2 -573 2741 2517 1028 243 21 0 chr1 134979915 134980154 -107684199 + MIR SINE MIR 15 258 -4 271 288 177 23 chr1 134980152 134980367 -107683986 - L2 LINE L2 -820 2494 2247 * 196 268 84 49 chr1 134980443 134980585 -107683768 - L2 LINE L2 -2064 1250 1104 447 116 0 0 chr1 134980606 134980675 -107683678 - L1PA10 LINE L1 -2 6166 6098 294 233 107 112 chr1 134980995 134981415 -107682938 - L1MC5 LINE L1 -386 7575 7244 1547 264 88 43 chr1 134981451 134982304 -107682049 - L1MC5 LINE L1 -759 7202 6259 2137 136 0 0 chr1 134982304 134982605 -107681748 - AluY SINE Alu -10 301 1 1547 264 88 43 chr1 134982605 134982899 -107681454 - L1MC5 LINE L1 -1702 6259 5980 366 205 13 0 chr1 134982904 134982982 -107681371 - L1MC5 LINE L1 -2148 5660 5582 535 350 57 38 chr1 134983130 134983602 -107680751 - L1M4 LINE L1 -3316 2830 2350 831 182 28 0 chr1 134983639 134983815 -107680538 - LTR52 LTR ERVL 0 421 241 520 180 0 0 chr1 134983817 134983906 -107680447 + FLAM_A SINE Alu 21 109 -33 767 205 35 12 chr1 134983964 134984135 -107680218 - LTR52 LTR ERVL -170 251 77 243 0 0 0 chr1 134984414 134984441 -107679912 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 329 203 13 0 chr1 134985602 134985681 -107678672 - MER116 DNA Mariner 0 80 1 26 30 0 0 chr1 134986937 134986970 -107677383 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr1 134987767 134987796 -107676557 + AT_rich Low_complexity Low_complexity 1 29 0 231 153 85 17 chr1 134988204 134988263 -107676090 - HAL1b LINE L1 -457 891 829 711 268 76 13 chr1 134988307 134988621 -107675732 - HAL1b LINE L1 -701 647 314 459 281 128 0 chr1 134988923 134989087 -107675266 + L2 LINE L2 2550 2734 -580 1953 299 80 23 chr1 134989094 134990362 -107673991 + L2 LINE L2 1964 3308 -5 337 146 115 21 chr1 134990513 134990609 -107673744 + L1ME3A LINE L1 5884 5988 -182 * 1092 243 29 104 chr1 134990594 134991344 -107673009 - L1MCa LINE L1 -1269 5157 4464 * 1159 253 58 58 chr1 134991342 134992137 -107672216 - L1MCa LINE L1 -2295 4131 3337 1442 250 58 0 chr1 134992138 134992486 -107671867 + MER119 DNA MER1_type 1 368 -215 289 285 78 48 chr1 134992587 134992927 -107671426 - L1MCa LINE L1 -4658 1949 1411 285 273 91 0 chr1 134993300 134993388 -107670965 + L2 LINE L2 3194 3289 -24 450 143 0 0 chr1 134993580 134993657 -107670696 + (TA)n Simple_repeat Simple_repeat 2 78 0 2321 98 3 0 chr1 134993657 134993954 -107670399 - AluSp SINE Alu -15 298 1 199 292 0 21 chr1 134995319 134995367 -107668986 + MIR SINE MIR 19 65 -197 2156 104 7 3 chr1 134995768 134996066 -107668287 - AluY SINE Alu -12 299 1 194 114 0 23 chr1 134996112 134996156 -107668197 + (TAA)n Simple_repeat Simple_repeat 1 43 0 318 217 193 0 chr1 134996197 134996280 -107668073 - MIR SINE MIR -98 164 66 397 211 0 13 chr1 134996557 134996713 -107667640 + (TGG)n Simple_repeat Simple_repeat 2 155 0 427 268 7 20 chr1 134996726 134996879 -107667474 + (TGG)n Simple_repeat Simple_repeat 1 151 0 443 211 0 7 chr1 134996893 134997040 -107667313 + (TGG)n Simple_repeat Simple_repeat 1 146 0 271 180 135 34 chr1 134998265 134998354 -107665999 + L1ME2 LINE L1 6000 6097 -67 278 252 20 41 chr1 134998409 134998556 -107665797 + L1MC5 LINE L1 7774 7917 -44 415 229 0 0 chr1 135000136 135000219 -107664134 + L2 LINE L2 3184 3266 -6 932 282 111 38 chr1 135000571 135001081 -107663272 - L2 LINE L2 -16 3297 2739 937 235 138 81 chr1 135001120 135001947 -107662406 - L1MC5 LINE L1 -60 7901 7028 385 216 57 0 chr1 135001952 135002040 -107662313 - L2 LINE L2 -567 2747 2655 4315 118 30 37 chr1 135002130 135002640 -107661713 - L1MA8 LINE L1 -5 6286 5781 1936 146 7 23 chr1 135002640 135002948 -107661405 - AluJb SINE Alu -9 303 1 4315 118 30 37 chr1 135002948 135003203 -107661150 - L1MA8 LINE L1 -510 5781 5526 613 284 78 55 chr1 135003205 135003603 -107660750 + MLT1J LTR MaLR 62 468 -43 669 273 55 47 chr1 135003656 135003752 -107660601 - L2 LINE L2 -687 2627 2533 2306 112 0 3 chr1 135003752 135004056 -107660297 - AluSq SINE Alu -10 303 1 669 273 55 47 chr1 135004056 135004234 -107660119 - L2 LINE L2 -781 2533 2351 34 19 0 19 chr1 135004969 135004992 -107659361 + AT_rich Low_complexity Low_complexity 1 23 -28 1955 137 33 16 chr1 135004992 135005299 -107659054 - AluSx SINE Alu 0 312 1 34 19 0 19 chr1 135005299 135005327 -107659026 + AT_rich Low_complexity Low_complexity 23 51 0 1231 77 35 0 chr1 135005329 135005498 -107658855 - L1MA1 LINE L1 -5 6297 6123 591 301 68 4 chr1 135005548 135005784 -107658569 + L2 LINE L2 2914 3164 -149 238 315 0 0 chr1 135005904 135005958 -107658395 - MIR SINE MIR -4 258 205 507 264 109 31 chr1 135005960 135006345 -107658008 + L2 LINE L2 2575 3060 -253 839 270 216 22 chr1 135006447 135007215 -107657138 - L2 LINE L2 -1 3312 2423 264 224 206 19 chr1 135007365 135007472 -107656881 - L2 LINE L2 -949 2365 2239 525 249 66 41 chr1 135007502 135007699 -107656654 + L2 LINE L2 3111 3312 -1 839 220 142 41 chr1 135008203 135008498 -107655855 - MLT1H LTR MaLR -1 548 224 456 237 54 61 chr1 135058881 135059160 -107605193 + LTR33 LTR ERVL 12 288 -233 1720 95 0 4 chr1 135060020 135060261 -107604092 + L1PB1 LINE L1 5911 6150 -1 27 49 0 0 chr1 135060261 135060302 -107604051 + AT_rich Low_complexity Low_complexity 1 41 0 1172 214 46 29 chr1 135061502 135062133 -107602220 - L1ME LINE L1 -586 5561 4915 421 244 101 27 chr1 135062218 135062583 -107601770 - L1ME LINE L1 -5033 1086 695 1647 174 29 4 chr1 135062800 135063075 -107601278 + AluJo SINE Alu 1 282 -30 185 62 0 31 chr1 135063078 135063110 -107601243 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 310 216 88 0 chr1 135063260 135063362 -107600991 - L1MEc LINE L1 -1621 4805 4695 3203 195 64 35 chr1 135063455 135063884 -107600469 - L1ME2 LINE L1 -9 6155 5740 1826 136 0 4 chr1 135063884 135064156 -107600197 + AluSx SINE Alu 37 307 -5 3203 195 64 35 chr1 135064156 135064176 -107600177 - L1ME2 LINE L1 -424 5740 5722 219 69 0 0 chr1 135064176 135064205 -107600148 + (TG)n Simple_repeat Simple_repeat 1 29 0 3203 195 64 35 chr1 135064205 135064618 -107599735 - L1ME2 LINE L1 -442 5722 5258 2137 117 21 0 chr1 135064618 135064908 -107599445 + AluSg SINE Alu 1 296 -14 3203 195 64 35 chr1 135064908 135065061 -107599292 - L1ME2 LINE L1 -906 5258 5111 * 3734 272 104 9 chr1 135065039 135067124 -107597229 - L1MEc LINE L1 -1734 4692 2411 670 221 103 101 chr1 135067165 135067649 -107596704 + Charlie7 DNA MER1_type 2067 2551 -61 509 299 11 70 chr1 135067714 135067901 -107596452 - MIR3 SINE MIR -13 195 20 2090 110 35 0 chr1 135068124 135068406 -107595947 + AluSc SINE Alu 1 292 -17 440 215 184 37 chr1 135070275 135070438 -107593915 - MIR3 SINE MIR -19 189 3 409 306 62 29 chr1 135071768 135072083 -107592270 - L1MC/D LINE L1 -447 6003 5679 487 320 91 51 chr1 135072163 135072594 -107591759 - L1MC/D LINE L1 -966 5460 5013 431 245 84 37 chr1 135072594 135072917 -107591436 - L1MC/D LINE L1 -2164 4262 3925 * 1035 292 50 14 chr1 135072915 135073534 -107590819 + L1MEc LINE L1 1039 1679 -4717 595 310 36 7 chr1 135073535 135073884 -107590469 - L1MEc LINE L1 -4794 1779 1265 619 300 81 73 chr1 135073904 135074424 -107589929 - L1MEc LINE L1 -5004 1412 889 2254 115 3 3 chr1 135074554 135074866 -107589487 - AluSp SINE Alu 0 313 2 273 223 79 0 chr1 135074926 135075015 -107589338 + L1MC/D LINE L1 5371 5463 -843 26 0 0 0 chr1 135075642 135075668 -107588685 + AT_rich Low_complexity Low_complexity 1 26 0 267 31 0 0 chr1 135075718 135075750 -107588603 + (TG)n Simple_repeat Simple_repeat 2 33 0 * 399 21 0 0 chr1 135075749 135075797 -107588556 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 2220 108 0 13 chr1 135076889 135077203 -107587150 - AluSg SINE Alu 0 310 1 360 248 84 35 chr1 135081506 135081816 -107582537 - L1ME4a LINE L1 -1 6120 5796 533 277 68 38 chr1 135081842 135082077 -107582276 + MIR SINE MIR 2 243 -19 364 322 33 22 chr1 135082088 135082268 -107582085 - L1ME4a LINE L1 -346 5775 5594 421 319 66 26 chr1 135082896 135083122 -107581231 - MIR SINE MIR -6 256 22 262 255 63 3 chr1 135084023 135084110 -107580243 - MIR SINE MIR -63 145 72 627 203 187 21 chr1 135084146 135084333 -107580020 - MER20 DNA MER1_type 0 219 2 385 314 85 0 chr1 135084339 135084457 -107579896 - L2 LINE L2 -1 3271 3144 200 328 15 0 chr1 135084447 135084514 -107579839 - MIR SINE MIR -182 80 13 * 186 300 0 0 chr1 135084560 135084610 -107579743 - MIR SINE MIR -26 236 187 950 103 7 0 chr1 135084651 135084787 -107579566 + AluY SINE Alu 175 311 0 435 275 0 0 chr1 135084990 135085110 -107579243 + MER103 DNA DNA 1 120 -46 201 443 0 0 chr1 135086518 135086640 -107577713 - L2 LINE L2 -217 3055 2934 332 330 55 0 chr1 135087732 135087841 -107576512 + MIR SINE MIR 38 152 -56 309 309 94 60 chr1 135087996 135088294 -107576059 - L2 LINE L2 -948 2366 2059 2259 123 34 22 chr1 135089372 135089730 -107574623 - THE1B LTR MaLR -2 362 1 513 237 153 11 chr1 135092203 135092380 -107571973 + MIR SINE MIR 56 257 -5 207 139 0 0 chr1 135092651 135092687 -107571666 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 252 81 0 0 chr1 135094896 135094933 -107569420 - L2 LINE L2 -8 3305 3269 200 336 93 0 chr1 135095890 135095997 -107568356 - MIR SINE MIR -13 249 133 216 320 90 34 chr1 135096322 135096500 -107567853 + L2 LINE L2 3111 3298 -15 3692 134 31 55 chr1 135096700 135097475 -107566878 + L1MA9 LINE L1 5522 6277 -35 203 191 24 0 chr1 135097728 135097770 -107566583 + (TG)n Simple_repeat Simple_repeat 1 43 0 2418 111 13 26 chr1 135097915 135098295 -107566058 - THE1C LTR MaLR 0 375 1 2097 226 66 15 chr1 135098507 135099095 -107565258 + L1MC4 LINE L1 6444 7061 -981 1478 214 116 32 chr1 135099102 135099475 -107564878 + L1MC4 LINE L1 7168 7595 -447 1920 179 3 0 chr1 135099475 135099782 -107564571 + AluJo SINE Alu 1 308 -4 1478 214 116 32 chr1 135099782 135099908 -107564445 + L1MC4 LINE L1 7595 7709 -333 267 257 47 54 chr1 135100067 135100215 -107564138 - HAL1 LINE L1 -123 2384 2238 676 223 26 31 chr1 135100242 135100435 -107563918 - L1ME1 LINE L1 -5 6161 5970 870 314 58 2 chr1 135101139 135101556 -107562797 - HAL1 LINE L1 -854 1653 1214 304 278 121 33 chr1 135102115 135102388 -107561965 - HAL1 LINE L1 -1397 1110 814 714 85 34 17 chr1 135102855 135103031 -107561322 + (TA)n Simple_repeat Simple_repeat 1 179 0 363 132 53 7 chr1 135103055 135103207 -107561146 + (TA)n Simple_repeat Simple_repeat 1 159 0 1334 206 34 124 chr1 135104272 135104725 -107559628 + MLT1D LTR MaLR 2 398 -107 541 138 0 0 chr1 135104725 135104812 -107559541 - L1MA5A LINE L1 -2 6295 6209 1334 206 34 124 chr1 135104812 135104912 -107559441 + MLT1D LTR MaLR 398 505 0 5577 109 4 13 chr1 135105154 135106116 -107558237 - L1PA13 LINE L1 -19 6144 5174 22 0 0 0 chr1 135106116 135106138 -107558215 + AT_rich Low_complexity Low_complexity 1 22 0 3490 29 17 0 chr1 135106142 135106559 -107557794 - L1PA4 LINE L1 -7 6148 5725 5577 109 4 13 chr1 135106559 135106604 -107557749 - L1PA13 LINE L1 -992 5171 5107 354 324 34 59 chr1 135106893 135107097 -107557256 - L2 LINE L2 -54 3218 3020 241 313 7 73 chr1 135107267 135107417 -107556936 - L2 LINE L2 -444 2870 2731 342 220 89 46 chr1 135108154 135108413 -107555940 - L1MEd LINE L1 -5026 1093 824 346 372 0 14 chr1 135109183 135109331 -107555022 + MER5A DNA MER1_type 7 152 -37 1330 195 12 66 chr1 135109387 135109812 -107554541 + L1M4 LINE L1 4362 4763 -1383 604 128 160 0 chr1 135109812 135109937 -107554416 - MLT1D LTR MaLR -360 145 1 313 289 19 19 chr1 135110103 135110207 -107554146 - MIR SINE MIR -65 197 94 229 204 20 0 chr1 135110647 135110696 -107553657 + L1MEd LINE L1 814 863 -5509 21 82 0 0 chr1 135111086 135111135 -107553218 + AT_rich Low_complexity Low_complexity 1 49 0 952 286 74 49 chr1 135111452 135112266 -107552087 - L1ME LINE L1 -366 5804 5012 1768 191 86 51 chr1 135112266 135112754 -107551599 - MLT1D LTR MaLR 0 505 1 952 286 74 49 chr1 135112754 135113421 -107550932 - L1ME LINE L1 -1158 5012 4277 1747 154 17 24 chr1 135113421 135113719 -107550634 - AluJo SINE Alu -6 306 11 952 286 74 49 chr1 135113719 135113891 -107550462 - L1ME LINE L1 -1893 4277 4111 916 161 6 25 chr1 135113912 135114218 -107550135 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr1 135114692 135114713 -107549640 + AT_rich Low_complexity Low_complexity 1 21 0 2600 43 0 3 chr1 135114943 135115248 -107549105 + AluY SINE Alu 1 304 -7 264 283 38 38 chr1 135115731 135115890 -107548463 + L1ME4a LINE L1 5462 5620 -501 639 258 0 0 chr1 135116303 135116458 -107547895 + MER105 DNA DNA 7 161 -43 235 200 0 0 chr1 135116459 135116499 -107547854 - MER105 DNA DNA -163 41 2 243 254 75 15 chr1 135116610 135116744 -107547609 + L1MEd LINE L1 967 1108 -5455 402 251 78 59 chr1 135116745 135116964 -107547389 + L1MEd LINE L1 1115 1337 -5035 360 247 81 78 chr1 135116965 135117285 -107547068 + L1MEd LINE L1 1279 1616 -4785 359 210 134 69 chr1 135117346 135117651 -107546702 + L1ME4a LINE L1 5725 6049 -72 7131 144 22 2 chr1 135118131 135119334 -107545019 + Ricksha_b DNA DNA 4 1229 -25 246 105 0 0 chr1 135120375 135120413 -107543940 + (TG)n Simple_repeat Simple_repeat 1 38 0 241 264 14 14 chr1 135120513 135120585 -107543768 - MIR SINE MIR -25 237 166 1985 131 3 0 chr1 135120589 135120871 -107543482 + AluSx SINE Alu 28 310 -2 220 231 0 19 chr1 135120914 135120966 -107543387 - MIR SINE MIR -102 160 110 267 289 0 21 chr1 135120966 135121063 -107543290 - MLT1J1 LTR MaLR -6 440 346 1934 153 0 23 chr1 135122649 135122957 -107541396 + AluJo SINE Alu 7 307 -5 996 213 63 17 chr1 135122981 135123220 -107541133 - MIR SINE MIR -12 250 1 1805 150 83 3 chr1 135125873 135126234 -107538119 + MLT1B LTR MaLR 1 390 0 1834 183 38 77 chr1 135127291 135128004 -107536349 + L1MEd LINE L1 2215 2906 -3476 * 2651 205 36 14 chr1 135128002 135128690 -107535663 + L1MEd LINE L1 3524 4226 -2156 1085 189 44 33 chr1 135128687 135128757 -107535596 + L1MB8 LINE L1 4989 5057 -1123 * 2303 111 0 7 chr1 135128757 135129063 -107535290 + AluSx SINE Alu 1 304 -8 1085 189 44 33 chr1 135129063 135129490 -107534863 + L1MB8 LINE L1 5057 5491 -689 1472 204 29 10 chr1 135129533 135129842 -107534511 - Tigger7 DNA MER2_type -418 315 1 1490 153 112 55 chr1 135129843 135130190 -107534163 + L1MB8 LINE L1 5494 5860 -324 352 122 2 0 chr1 135130197 135130260 -107534093 - L1MB8 LINE L1 -277 5901 5839 1594 159 37 16 chr1 135130293 135130614 -107533739 + L1MB8 LINE L1 5851 6178 0 1573 194 66 74 chr1 135132288 135132788 -107531565 - MLT1D LTR MaLR -5 500 5 308 238 50 50 chr1 135132918 135133019 -107531334 - MIR3 SINE MIR -46 162 62 312 253 0 32 chr1 135133965 135134060 -107530293 + L1MEd LINE L1 1539 1630 -5004 257 250 19 30 chr1 135134111 135134235 -107530118 + L1MEd LINE L1 1526 1726 -4908 1232 275 17 9 chr1 135134249 135134598 -107529755 - MLT1J LTR MaLR -156 355 4 1935 164 0 3 chr1 135134635 135134945 -107529408 + AluJo SINE Alu 1 309 -3 461 307 139 24 chr1 135134950 135135621 -107528732 + L1M4 LINE L1 3277 4024 -2122 319 301 64 10 chr1 135135806 135136102 -107528251 + L1M4 LINE L1 4114 4425 -1721 574 315 59 46 chr1 135136306 135136834 -107527519 + L1M4 LINE L1 4881 5403 -743 377 153 35 0 chr1 135137163 135137248 -107527105 + Charlie5 DNA MER1_type 2461 2548 -64 213 39 0 0 chr1 135138704 135138730 -107525623 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 1978 94 25 7 chr1 135138736 135139037 -107525316 - AluSx SINE Alu 0 306 1 303 269 32 21 chr1 135140273 135140366 -107523987 - MER110-int LTR ERV1 -1476 5325 5232 506 280 44 33 chr1 135141894 135142165 -107522188 - MER110-int LTR ERV1 -4201 446 173 2301 98 0 32 chr1 135142810 135143125 -107521228 + AluSx SINE Alu 1 305 -7 649 88 20 0 chr1 135143125 135143227 -107521126 + (GGAA)n Simple_repeat Simple_repeat 1 104 0 205 238 0 0 chr1 135143708 135143750 -107520603 + L2 LINE L2 3272 3313 0 182 36 0 36 chr1 135144835 135144863 -107519490 + (TTG)n Simple_repeat Simple_repeat 1 27 0 246 286 0 0 chr1 135146724 135146780 -107517573 + MIR SINE MIR 48 103 -159 478 302 20 20 chr1 135147766 135147915 -107516438 - MIR SINE MIR -112 150 2 683 346 125 27 chr1 135149239 135149832 -107514521 + L3 LINE CR1 703 1353 -224 570 209 184 10 chr1 135149949 135150150 -107514203 + MER96B DNA MER1_type? 1 236 -181 273 321 98 19 chr1 135150653 135150868 -107513485 - L2 LINE L2 -338 2976 2745 225 0 0 0 chr1 135151538 135151563 -107512790 + (TC)n Simple_repeat Simple_repeat 2 26 0 234 0 0 0 chr1 135151564 135151590 -107512763 + (CA)n Simple_repeat Simple_repeat 2 27 0 275 244 0 170 chr1 135151604 135151739 -107512614 + MER5A DNA MER1_type 78 189 0 283 244 168 17 chr1 135152271 135152390 -107511963 - MER91A DNA MER1_type -27 169 33 221 315 33 22 chr1 135152392 135152484 -107511869 - MIR SINE MIR -163 99 7 411 214 0 0 chr1 135153580 135153650 -107510703 - Tigger2a DNA MER2_type 0 444 375 1342 107 15 5 chr1 135153650 135153855 -107510498 - L1PA15 LINE L1 -4 6161 5955 688 35 0 0 chr1 135153858 135153944 -107510409 - L1PA15 LINE L1 -261 5905 5820 1561 204 28 3 chr1 135153944 135154307 -107510046 + L1P LINE L1 4788 5159 -987 2049 148 36 25 chr1 135154307 135154700 -107509653 - Tigger2a DNA MER2_type -37 397 1 7906 9 0 0 chr1 135154811 135155790 -107508563 - L1PA2 LINE L1 0 6155 5206 609 115 0 0 chr1 135156361 135156448 -107507905 + AluS SINE Alu 220 306 -3 25 51 0 0 chr1 135157093 135157132 -107507221 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr1 135157301 135157322 -107507031 + (A)n Simple_repeat Simple_repeat 1 21 0 400 250 186 6 chr1 135158093 135158265 -107506088 - MIR SINE MIR -53 209 7 25 31 0 0 chr1 135159759 135159791 -107504562 + AT_rich Low_complexity Low_complexity 1 32 0 854 286 95 30 chr1 135159823 135160347 -107504006 - L1ME3A LINE L1 -230 5923 5366 1846 142 36 3 chr1 135160508 135160852 -107503501 - AluJb SINE Alu 0 354 1 267 229 106 90 chr1 135160905 135161150 -107503203 - L1ME3A LINE L1 -1116 5013 4765 636 272 12 6 chr1 135161183 135161352 -107503001 - MIR SINE MIR -21 241 72 907 282 114 27 chr1 135161609 135161748 -107502605 - L1ME3A LINE L1 -1957 4172 4047 2452 77 0 0 chr1 135161748 135162059 -107502294 - AluY SINE Alu 0 311 1 907 282 114 27 chr1 135162059 135162469 -107501884 - L1ME3A LINE L1 -2082 4047 3575 1409 118 9 0 chr1 135162713 135162924 -107501429 + L1MC1 LINE L1 5840 6052 -281 336 269 66 46 chr1 135163059 135163256 -107501097 - L1MEc LINE L1 -4636 1499 1293 396 247 129 59 chr1 135163286 135163362 -107500991 - L1MEc LINE L1 -4916 1203 1134 273 29 0 0 chr1 135163362 135163396 -107500957 + (CA)n Simple_repeat Simple_repeat 2 35 0 396 247 129 59 chr1 135163396 135163407 -107500946 - L1MEc LINE L1 -4985 1134 1125 181 0 69 0 chr1 135163407 135163436 -107500917 + (TA)n Simple_repeat Simple_repeat 2 32 0 396 247 129 59 chr1 135163436 135163720 -107500633 - L1MEc LINE L1 -4994 1125 805 1858 119 45 0 chr1 135164532 135164800 -107499553 - L1PA15 LINE L1 -3 6162 5883 5617 130 22 7 chr1 135164845 135165714 -107498639 + L1MA5 LINE L1 5419 6300 0 180 77 0 0 chr1 135165962 135165988 -107498365 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 413 279 177 49 chr1 135167073 135167299 -107497054 + MIR SINE MIR 6 260 -2 481 296 36 36 chr1 135168642 135168919 -107495434 + L1MEd LINE L1 823 1099 -5020 260 281 94 0 chr1 135168997 135169168 -107495185 + L1MEd LINE L1 1277 1463 -4847 * 3512 257 89 64 chr1 135169144 135169389 -107494964 + HAL1 LINE L1 481 718 -1772 192 40 0 0 chr1 135169389 135169414 -107494939 + (CTTG)n Simple_repeat Simple_repeat 1 25 0 3512 257 89 64 chr1 135169414 135169479 -107494874 + HAL1 LINE L1 718 780 -1710 925 146 15 0 chr1 135169479 135169609 -107494744 - FLAM_C SINE Alu -1 132 1 3512 257 89 64 chr1 135169609 135171258 -107493095 + HAL1 LINE L1 780 2490 0 255 265 20 29 chr1 135171647 135171749 -107492604 - L1ME4a LINE L1 -53 6068 5968 707 288 111 31 chr1 135171879 135172299 -107492054 - L1ME4a LINE L1 -343 5821 5369 299 376 157 11 chr1 135172302 135172589 -107491764 - L2 LINE L2 -12 3260 2932 510 232 23 11 chr1 135173107 135173241 -107491112 - LTR28 LTR ERV1 0 1020 688 1642 210 118 126 chr1 135173278 135174060 -107490293 - LTR28 LTR ERV1 -48 972 1 243 371 40 8 chr1 135174219 135174343 -107490010 - MIR SINE MIR -120 142 15 1875 116 18 25 chr1 135174499 135174784 -107489569 + AluSx SINE Alu 21 303 -9 1999 240 108 21 chr1 135175464 135176038 -107488315 - MLT1E3 LTR MaLR 0 624 1 576 273 31 35 chr1 135176181 135176427 -107487926 - MIR SINE MIR -15 247 1 1358 263 62 19 chr1 135177373 135177795 -107486558 + MLT1J1 LTR MaLR 3 442 -4 23 86 0 0 chr1 135178235 135178293 -107486060 + AT_rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr1 135178719 135178747 -107485606 + AT_rich Low_complexity Low_complexity 1 28 0 2616 96 6 3 chr1 135179637 135179980 -107484373 - L1PA10 LINE L1 -5 6163 5820 295 279 77 30 chr1 135180477 135180710 -107483643 + L1MEd LINE L1 847 1090 -5029 1282 175 85 0 chr1 135180711 135180934 -107483419 + Tigger3(Golem) DNA MER2_type 2788 3029 0 231 157 0 0 chr1 135181115 135181166 -107483187 + A-rich Low_complexity Low_complexity 1 51 0 2689 55 0 0 chr1 135182221 135182532 -107481821 - AluY SINE Alu 0 311 1 2036 145 10 3 chr1 135182720 135183030 -107481323 + AluJb SINE Alu 1 312 0 243 218 0 0 chr1 135183038 135183093 -107481260 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 1633 168 7 28 chr1 135183100 135183391 -107480962 + AluJo SINE Alu 1 285 -27 1269 162 5 0 chr1 135184143 135184341 -107480012 + MER58A DNA MER1_type 26 224 0 320 320 33 8 chr1 135184362 135184484 -107479869 + MIR SINE MIR 67 191 -71 21 0 0 0 chr1 135184803 135184824 -107479529 + AT_rich Low_complexity Low_complexity 1 21 0 379 319 43 0 chr1 135186827 135186943 -107477410 - L2 LINE L2 -10 3262 3142 2882 7 0 0 chr1 135187055 135187364 -107476989 - AluY SINE Alu -2 309 1 2359 87 7 0 chr1 135187579 135187888 -107476465 + AluSp SINE Alu 1 311 -2 2078 90 7 0 chr1 135187966 135188243 -107476110 + AluSp SINE Alu 33 311 -2 209 269 75 60 chr1 135188287 135188354 -107475999 + L2 LINE L2 3144 3211 -61 281 280 48 95 chr1 135189111 135189279 -107475074 - MIR SINE MIR 0 262 103 362 337 49 71 chr1 135189487 135189855 -107474498 - L2 LINE L2 0 3272 2913 316 264 127 0 chr1 135189912 135190022 -107474331 - L2 LINE L2 -511 2803 2680 367 250 125 0 chr1 135190027 135190131 -107474222 - L2 LINE L2 -16 3297 3181 2256 71 0 0 chr1 135190504 135190809 -107473544 + L1PA8 LINE L1 5866 6170 0 2346 96 0 3 chr1 135192622 135192923 -107471430 + AluSc SINE Alu 1 300 -9 2151 132 0 0 chr1 135193313 135193616 -107470737 - AluSx SINE Alu -9 303 1 203 194 0 0 chr1 135193653 135193689 -107470664 + (TA)n Simple_repeat Simple_repeat 2 37 0 189 0 0 0 chr1 135193689 135193710 -107470643 + (CA)n Simple_repeat Simple_repeat 2 22 0 572 187 93 0 chr1 135194131 135194238 -107470115 - MIR SINE MIR -127 135 19 266 336 0 0 chr1 135194365 135194475 -107469878 + HAL1b LINE L1 1210 1319 -29 363 263 19 38 chr1 135195454 135195614 -107468739 + (TATATG)n Simple_repeat Simple_repeat 3 159 0 5043 134 58 11 chr1 135196346 135196567 -107467786 - L1MB1 LINE L1 -1 6167 5958 1753 166 55 66 chr1 135196567 135196770 -107467583 - THE1C LTR MaLR 0 375 176 2346 74 3 32 chr1 135196770 135197080 -107467273 - AluSq SINE Alu -12 301 1 1753 166 55 66 chr1 135197080 135197255 -107467098 - THE1C LTR MaLR -199 176 1 5043 134 58 11 chr1 135197255 135198038 -107466315 - L1MB1 LINE L1 -210 5958 5116 260 337 201 15 chr1 135198937 135199136 -107465217 - L2 LINE L2 -6 3266 3031 562 301 76 56 chr1 135199272 135199704 -107464649 - MLT1K LTR MaLR -64 524 84 630 297 172 48 chr1 135199973 135201143 -107463210 + L2 LINE L2 1959 3268 -4 216 0 0 0 chr1 135201274 135201298 -107463055 + (A)n Simple_repeat Simple_repeat 1 24 0 1432 151 56 102 chr1 135202405 135202710 -107461643 - AluJo SINE Alu -21 291 1 323 297 211 10 chr1 135202745 135202954 -107461399 + MIR SINE MIR 12 262 0 293 226 57 88 chr1 135203417 135203576 -107460777 + MIR SINE MIR 31 184 -78 1648 200 67 65 chr1 135204102 135204592 -107459761 - MLT1D LTR MaLR -9 496 6 722 249 24 71 chr1 135204686 135204939 -107459414 - MLT1K LTR MaLR -18 570 330 243 277 50 20 chr1 135205065 135205166 -107459187 - MLT1K LTR MaLR -472 116 13 221 234 21 0 chr1 135205673 135205720 -107458633 - MIR SINE MIR -17 245 198 4940 127 43 10 chr1 135205822 135206609 -107457744 - L1PA16 LINE L1 -9 6157 5345 196 280 67 40 chr1 135206723 135206798 -107457555 - L2 LINE L2 -9 3263 3187 296 290 41 48 chr1 135206873 135207018 -107457335 - MIR SINE MIR -19 243 100 422 217 9 0 chr1 135207034 135207149 -107457204 + GA-rich Low_complexity Low_complexity 1 116 0 23 0 0 0 chr1 135208157 135208180 -107456173 + AT_rich Low_complexity Low_complexity 1 23 0 1290 221 14 11 chr1 135208537 135208813 -107455540 - MLT1A2 LTR MaLR -11 363 87 550 204 10 0 chr1 135208804 135208907 -107455446 - MER3 DNA MER1_type -104 105 2 * 2559 266 131 37 chr1 135209147 135209798 -107454555 + L1ME LINE L1 3384 3972 -2192 2358 106 3 0 chr1 135209798 135210099 -107454254 - AluSp SINE Alu -11 302 1 2559 266 131 37 chr1 135210099 135210319 -107454034 + L1ME LINE L1 3972 4170 -1994 2078 128 3 13 chr1 135210319 135210617 -107453736 - AluSx SINE Alu -17 295 1 2559 266 131 37 chr1 135210617 135211172 -107453181 + L1ME LINE L1 4170 4671 -1493 2236 97 7 0 chr1 135211172 135211451 -107452902 + AluSg SINE Alu 17 297 -13 2559 266 131 37 chr1 135211451 135211562 -107452791 + L1ME LINE L1 4671 4770 -1394 1741 180 0 26 chr1 135211562 135211867 -107452486 - AluJo SINE Alu -15 297 1 2559 266 131 37 chr1 135211867 135212259 -107452094 + L1ME LINE L1 4770 5500 -664 841 219 151 45 chr1 135212511 135212822 -107451531 + MER2 DNA MER2_type 1 344 0 192 288 100 12 chr1 135213037 135213117 -107451236 + L2 LINE L2 1820 1906 -1408 389 258 32 24 chr1 135214577 135214701 -107449652 + MIR SINE MIR 104 228 -34 652 226 119 0 chr1 135214805 135214964 -107449389 + MER5B DNA MER1_type 1 178 0 443 187 39 20 chr1 135216070 135216186 -107448167 - MLT1H LTR MaLR -394 155 60 317 311 210 45 chr1 135216320 135216587 -107447766 - L2 LINE L2 -5 3267 2957 3948 106 13 17 chr1 135216801 135217330 -107447023 + MER1A DNA MER1_type 1 527 0 252 291 12 0 chr1 135217600 135217686 -107446667 - MIR SINE MIR -167 95 9 1196 217 143 40 chr1 135217822 135218227 -107446126 - LTR16A1 LTR ERVL -10 447 1 330 331 86 22 chr1 135219399 135219538 -107444815 + MER5B DNA MER1_type 1 148 -30 663 37 0 0 chr1 135219791 135219873 -107444480 + (TCCA)n Simple_repeat Simple_repeat 1 82 0 222 37 0 0 chr1 135220010 135220037 -107444316 + (T)n Simple_repeat Simple_repeat 1 27 0 26708 24 1 0 chr1 135220078 135223809 -107440544 - L1PA2 LINE L1 -4 6151 2417 17991 33 1 0 chr1 135223909 135226059 -107438294 - L1P LINE L1 -2434 3712 1560 17612 47 60 3 chr1 135226159 135228409 -107435944 - L1PA2 LINE L1 -3767 2379 1 329 191 170 0 chr1 135228415 135228509 -107435844 - MER113 DNA MER1_type? -207 314 205 2328 233 53 2 chr1 135228627 135229275 -107435078 + L1ME1 LINE L1 5424 6144 -36 335 227 118 18 chr1 135229769 135229879 -107434474 - MER96 DNA MER1_type? -2 173 53 186 305 84 32 chr1 135230078 135230173 -107434180 - L2 LINE L2 -215 3098 2999 184 288 14 55 chr1 135230551 135230624 -107433729 - L2 LINE L2 0 3272 3203 264 237 125 59 chr1 135231458 135231610 -107432743 + L1ME4a LINE L1 5586 5747 -374 891 284 84 23 chr1 135231667 135232061 -107432292 + L1MC4a LINE L1 5518 5935 -1873 335 221 115 33 chr1 135232072 135232104 -107432249 - MIR SINE MIR -6 256 228 2092 145 3 0 chr1 135232104 135232415 -107431938 - AluSx SINE Alu 0 312 1 335 221 115 33 chr1 135232415 135232504 -107431849 - MIR SINE MIR -34 228 125 443 254 53 18 chr1 135232615 135232729 -107431624 + L2 LINE L2 3191 3308 -5 281 216 93 43 chr1 135232892 135233031 -107431322 + L1ME4a LINE L1 5817 5962 -159 1396 156 100 19 chr1 135233191 135233461 -107430892 + AluJo SINE Alu 1 292 -20 195 184 0 0 chr1 135233461 135233499 -107430854 + (TA)n Simple_repeat Simple_repeat 1 38 0 484 230 143 37 chr1 135233695 135233912 -107430441 - L1ME4a LINE L1 -233 5888 5649 204 308 15 0 chr1 135235083 135235148 -107429205 - MER5A DNA MER1_type 0 189 124 293 282 51 43 chr1 135235315 135235432 -107428921 + MIR SINE MIR 58 175 -87 26 0 0 0 chr1 135236395 135236421 -107427932 + AT_rich Low_complexity Low_complexity 1 26 0 3093 23 3 6 chr1 135236421 135236768 -107427585 - L1PA5 LINE L1 -5 6149 5804 887 10 0 0 chr1 135236797 135236898 -107427455 + L1P1 LINE L1 5708 5808 -347 249 290 92 53 chr1 135236921 135237052 -107427301 - MIR3 SINE MIR -36 172 37 311 264 77 0 chr1 135237509 135237600 -107426753 - L2 LINE L2 -2 3311 3214 275 312 100 6 chr1 135237957 135238127 -107426226 - L1M4 LINE L1 -1303 4843 4658 1633 140 21 94 chr1 135238130 135238458 -107425895 - AluJb SINE Alu -8 304 1 25 31 0 0 chr1 135238716 135238748 -107425605 + AT_rich Low_complexity Low_complexity 1 32 0 355 304 141 0 chr1 135239213 135239397 -107424956 - L1M4 LINE L1 -3782 2364 2155 1080 264 52 34 chr1 135239554 135239941 -107424412 + L1MC4a LINE L1 5528 5921 -1887 21 0 0 0 chr1 135239942 135239963 -107424390 + AT_rich Low_complexity Low_complexity 1 21 0 250 285 162 48 chr1 135239963 135240384 -107423969 - L1M4 LINE L1 -2373 3773 3259 2607 68 0 0 chr1 135240384 135240695 -107423658 - AluY SINE Alu 0 311 1 250 285 162 48 chr1 135240695 135240883 -107423470 - L1M4 LINE L1 -2887 3259 3094 383 128 12 0 chr1 135241973 135242059 -107422294 + (TA)n Simple_repeat Simple_repeat 2 88 0 1455 212 14 17 chr1 135242075 135242363 -107421990 - AluJo SINE Alu -24 288 2 219 36 0 0 chr1 135242634 135242662 -107421691 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1787 136 29 4 chr1 135242664 135242936 -107421417 - AluSx SINE Alu -33 279 1 483 257 9 9 chr1 135243149 135243262 -107421091 + MER81 DNA DNA 2 114 0 725 162 63 0 chr1 135244092 135244203 -107420150 + AluSq/x SINE Alu 2 119 -194 388 298 97 64 chr1 135244212 135244802 -107419551 - L2 LINE L2 -688 2626 2018 215 264 184 61 chr1 135245175 135245387 -107418966 - MIR SINE MIR -12 250 13 280 150 125 0 chr1 135245758 135245838 -107418515 - MER106B DNA MER1_type -1 1058 969 2473 182 108 15 chr1 135245888 135246164 -107418189 - L1MD2 LINE L1 -10 6349 6100 3930 149 61 9 chr1 135246164 135246837 -107417516 - MER67C LTR ERV1 -2 708 1 2473 182 108 15 chr1 135246837 135247099 -107417254 - L1MD2 LINE L1 -259 6100 5761 856 198 6 30 chr1 135247103 135247270 -107417083 - MER106A DNA MER1_type -73 163 1 197 233 78 56 chr1 135248832 135248922 -107415431 + L2 LINE L2 2716 2807 -507 268 341 12 0 chr1 135248945 135249030 -107415323 + L2 LINE L2 3186 3271 -1 393 252 17 34 chr1 135249446 135249565 -107414788 + MIR SINE MIR 40 156 -106 1085 210 55 43 chr1 135249574 135249902 -107414451 + MER46C DNA MER2_type 7 338 0 218 257 64 64 chr1 135249902 135250011 -107414342 + MIR SINE MIR 153 261 -1 369 356 14 14 chr1 135250981 135251127 -107413226 + MER5A DNA MER1_type 8 153 -36 659 327 35 19 chr1 135251275 135251535 -107412818 - LTR16C LTR ERVL -198 293 30 8237 200 60 37 chr1 135252342 135254419 -107409934 - L1MDa LINE L1 -3890 2650 527 755 232 115 9 chr1 135254418 135254695 -107409658 - L1MC5 LINE L1 -1007 6807 6500 * 1625 168 16 40 chr1 135254750 135254886 -107409467 + AluJb SINE Alu 1 139 -173 2049 74 0 19 chr1 135254886 135255156 -107409197 + AluY SINE Alu 37 301 -10 1625 168 16 40 chr1 135255156 135255322 -107409031 + AluJb SINE Alu 139 296 -16 493 337 133 3 chr1 135255652 135255999 -107408354 - HAL1b LINE L1 -512 836 445 723 196 2 22 chr1 135256031 135256181 -107408172 - MLT1F LTR MaLR 0 542 400 762 272 60 8 chr1 135256357 135256607 -107407746 - LTR16A LTR ERVL -8 442 180 333 266 153 25 chr1 135256651 135256854 -107407499 - L1M4 LINE L1 -1279 4867 4639 1191 126 39 0 chr1 135257072 135257254 -107407099 + MER53 DNA DNA 1 189 0 274 256 160 24 chr1 135257978 135258103 -107406250 - MIR SINE MIR -7 255 114 473 156 156 9 chr1 135258202 135258311 -107406042 - MIR SINE MIR -125 137 13 2262 152 27 3 chr1 135258978 135259353 -107405000 - MLT1B LTR MaLR -6 384 1 322 226 59 20 chr1 135260012 135260114 -107404239 + L1ME4a LINE L1 5841 5946 -175 381 242 61 74 chr1 135261535 135261641 -107402712 + L1ME4a LINE L1 5724 5830 -291 2162 104 0 3 chr1 135261641 135261938 -107402415 + AluSc SINE Alu 1 296 -13 381 242 61 74 chr1 135261938 135262062 -107402291 + L1ME4a LINE L1 5830 5951 -170 1119 211 5 9 chr1 135262172 135262385 -107401968 - MER58A DNA MER1_type 0 224 13 334 300 117 20 chr1 135262401 135262648 -107401705 - L1ME LINE L1 -291 5830 5560 661 250 21 36 chr1 135263135 135263327 -107401026 + MIR SINE MIR 74 262 0 359 310 56 14 chr1 135263616 135263758 -107400595 - MIR SINE MIR -55 207 60 24 0 0 0 chr1 135264583 135264607 -107399746 + AT_rich Low_complexity Low_complexity 1 24 0 482 281 50 50 chr1 135264655 135264868 -107399485 + L1ME4a LINE L1 5605 5820 -301 2676 127 25 60 chr1 135264868 135265010 -107399343 + L1MB3 LINE L1 5685 5830 -353 2281 83 0 0 chr1 135265010 135265298 -107399055 + AluSg SINE Alu 5 292 -18 2676 127 25 60 chr1 135265298 135265669 -107398684 + L1MB3 LINE L1 5830 6180 -3 482 281 50 50 chr1 135265669 135265736 -107398617 + L1ME4a LINE L1 5819 5885 -236 1866 207 112 24 chr1 135265761 135266224 -107398129 - MLT1D LTR MaLR -1 504 1 312 272 46 82 chr1 135266444 135266518 -107397835 - MIR3 SINE MIR -6 202 127 2178 104 0 3 chr1 135266518 135266815 -107397538 + AluSx SINE Alu 7 302 -10 312 272 46 82 chr1 135266815 135266935 -107397418 - MIR3 SINE MIR -81 127 15 192 233 83 90 chr1 135267414 135267547 -107396806 - L2 LINE L2 -9 3263 3132 231 265 43 43 chr1 135267991 135268108 -107396245 - L2 LINE L2 -833 2481 2365 1574 134 131 0 chr1 135268144 135268451 -107395902 - AluJo SINE Alu 0 343 1 438 258 58 8 chr1 135269296 135269416 -107394937 + L2 LINE L2 3175 3300 -13 227 167 0 0 chr1 135269486 135269522 -107394831 - L1PA12 LINE L1 -6192 1389 1354 1089 206 80 20 chr1 135269638 135269939 -107394414 + MER33 DNA MER1_type 1 319 -5 329 228 13 0 chr1 135270548 135270627 -107393726 + MER116 DNA Mariner 1 80 0 297 51 0 0 chr1 135271359 135271398 -107392955 + (TC)n Simple_repeat Simple_repeat 2 40 0 1680 160 0 21 chr1 135271406 135271693 -107392660 - AluJo SINE Alu -30 282 2 1899 147 0 22 chr1 135272083 135272396 -107391957 + AluSx SINE Alu 1 306 -6 9128 26 0 0 chr1 135273163 135274990 -107389363 - L1PA3 LINE L1 -2 6153 4326 6848 19 0 0 chr1 135274990 135275766 -107388587 + L1PA3 LINE L1 3551 4326 -1820 1444 287 172 21 chr1 135275791 135276644 -107387709 + L2 LINE L2 750 1731 -1583 264 192 192 28 chr1 135277066 135277280 -107387073 + L1ME4a LINE L1 5870 6118 -3 202 219 0 0 chr1 135277921 135277953 -107386400 - MER5C DNA MER1_type -292 32 1 2300 85 0 25 chr1 135278211 135278527 -107385826 + AluSx SINE Alu 1 308 -4 428 339 77 22 chr1 135279243 135279426 -107384927 - MIR SINE MIR -10 252 60 291 316 21 11 chr1 135280064 135280159 -107384194 - MIR SINE MIR -2 260 165 451 174 9 73 chr1 135280437 135280475 -107383878 - MLT1D LTR MaLR 0 505 466 1721 160 102 3 chr1 135280475 135280807 -107383546 - MLT1A1 LTR MaLR 0 365 1 451 174 9 73 chr1 135280807 135280877 -107383476 - MLT1D LTR MaLR -39 466 404 376 204 23 34 chr1 135280912 135281000 -107383353 + MIR SINE MIR 145 231 -31 1281 198 114 12 chr1 135281263 135281596 -107382757 - MLT1D LTR MaLR -131 374 8 1928 115 0 67 chr1 135282849 135283179 -107381174 - AluSx SINE Alu -4 308 1 314 45 23 0 chr1 135283373 135283417 -107380936 + (CA)n Simple_repeat Simple_repeat 1 45 0 2081 99 20 0 chr1 135283709 135284001 -107380352 + AluSx SINE Alu 1 298 -14 226 253 13 13 chr1 135284243 135284318 -107380035 + CT-rich Low_complexity Low_complexity 4 78 0 5016 99 6 1 chr1 135285732 135286429 -107377924 - LTR5 LTR ERVK -269 700 1 1736 160 7 3 chr1 135286440 135286740 -107377613 + AluSq SINE Alu 9 309 -4 320 315 25 12 chr1 135287067 135287229 -107377124 + L1MB8 LINE L1 5990 6153 -25 923 281 86 16 chr1 135287237 135287622 -107376731 + L1MCa LINE L1 19 430 -5996 3335 207 42 14 chr1 135287622 135289118 -107375235 + L1MC2 LINE L1 4712 6339 -5 206 227 0 15 chr1 135289560 135289626 -107374727 + GA-rich Low_complexity Low_complexity 3 67 0 204 40 0 0 chr1 135289627 135289652 -107374701 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 203 381 57 0 chr1 135290190 135290295 -107374058 + L2 LINE L2 3198 3308 -5 200 271 0 0 chr1 135290780 135290828 -107373525 - L2 LINE L2 -1 3312 3265 509 284 43 0 chr1 135291184 135291325 -107373028 - L2 LINE L2 -797 2517 2371 1018 130 23 23 chr1 135291378 135291555 -107372798 + AluJo SINE Alu 84 260 -52 406 259 36 9 chr1 135291774 135291886 -107372467 - MLT1I LTR MaLR -18 391 277 440 294 108 5 chr1 135291963 135292157 -107372196 - L2 LINE L2 0 3313 3100 26 30 0 0 chr1 135292169 135292202 -107372151 + AT_rich Low_complexity Low_complexity 1 33 0 694 223 0 0 chr1 135292209 135292339 -107372014 + AluJo/FLAM SINE Alu 1 130 -172 1115 164 6 0 chr1 135292341 135292524 -107371829 + AluJb SINE Alu 1 184 -128 356 398 23 32 chr1 135293007 135293223 -107371130 - L2 LINE L2 -89 3183 2970 951 187 126 0 chr1 135293492 135293690 -107370663 + MER58A DNA MER1_type 1 223 -1 1918 126 4 0 chr1 135294127 135294405 -107369948 - AluSq SINE Alu -34 279 1 213 39 0 0 chr1 135294557 135294583 -107369770 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1749 120 43 29 chr1 135294584 135294860 -107369493 - AluSx SINE Alu -32 280 1 23 33 0 0 chr1 135295046 135295076 -107369277 + AT_rich Low_complexity Low_complexity 1 30 0 198 103 0 0 chr1 135295776 135295805 -107368548 + (TTA)n Simple_repeat Simple_repeat 1 29 0 659 216 102 42 chr1 135296672 135296885 -107367468 + MIR SINE MIR 24 252 -10 228 86 0 0 chr1 135296886 135296921 -107367432 + (TGG)n Simple_repeat Simple_repeat 2 36 0 314 259 24 24 chr1 135297386 135297471 -107366882 - L2 LINE L2 -42 3271 3187 187 215 292 0 chr1 135298504 135298569 -107365784 - L2 LINE L2 -6 3266 3183 2345 79 0 0 chr1 135299129 135299434 -107364919 - AluY SINE Alu -6 305 1 644 305 14 27 chr1 135301144 135301367 -107362986 - L2 LINE L2 0 3313 3094 640 296 87 45 chr1 135301719 135302406 -107361947 + L1M4 LINE L1 3764 4479 -1667 497 150 115 0 chr1 135302490 135302603 -107361750 - MER53 DNA DNA 0 189 64 604 294 68 24 chr1 135302731 135302979 -107361374 - LTR33 LTR ERVL 0 521 263 1877 110 7 78 chr1 135303642 135303778 -107360575 + AluSx SINE Alu 1 104 -208 1841 96 0 0 chr1 135303778 135304028 -107360325 + AluSq SINE Alu 44 293 -20 1877 110 7 78 chr1 135304028 135304200 -107360153 + AluSx SINE Alu 104 287 -25 3403 185 54 49 chr1 135304220 135304271 -107360082 - L1MD1 LINE L1 -21 6221 6172 2115 104 40 0 chr1 135304271 135304568 -107359785 + AluSx SINE Alu 2 310 -2 3403 185 54 49 chr1 135304568 135305251 -107359102 - L1MD1 LINE L1 -70 6172 5480 1877 137 0 23 chr1 135305251 135305557 -107358796 - AluSx SINE Alu -12 300 2 3403 185 54 49 chr1 135305557 135305679 -107358674 - L1MD1 LINE L1 -762 5480 5360 1087 289 38 0 chr1 135305754 135306172 -107358181 - L1MD1 LINE L1 -762 5384 4951 5389 156 13 36 chr1 135306180 135306682 -107357671 - L1PA16 LINE L1 -6 6160 5648 216 0 0 0 chr1 135306682 135306706 -107357647 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5389 156 13 36 chr1 135306706 135307656 -107356697 - L1PA16 LINE L1 -518 5648 4750 6620 199 70 59 chr1 135309039 135311159 -107353194 + L1M4 LINE L1 1 2166 -4480 290 291 28 21 chr1 135311164 135311305 -107353048 + L1M4 LINE L1 2265 2406 -4240 * 10261 32 3 2 chr1 135311296 135312548 -107351805 + L1P LINE L1 2039 3292 -2854 485 335 14 31 chr1 135312777 135313070 -107351283 + L1MEc LINE L1 821 1108 -6030 663 221 52 39 chr1 135313559 135313790 -107350563 + L1MEc LINE L1 1327 1641 -5306 7690 127 37 23 chr1 135313855 135315112 -107349241 - Tigger1 DNA MER2_type 0 2418 1144 1240 261 45 65 chr1 135315129 135315791 -107348562 + L1MEc LINE L1 2082 2730 -4408 2425 96 3 0 chr1 135315916 135316228 -107348125 + AluSq SINE Alu 1 313 0 378 267 107 13 chr1 135316318 135316468 -107347885 - MIR SINE MIR 0 262 99 196 231 0 39 chr1 135317095 135317147 -107347206 - MIR3 SINE MIR -7 201 152 661 219 0 0 chr1 135317147 135317261 -107347092 - MER81 DNA DNA 0 114 1 515 206 0 0 chr1 135317679 135317771 -107346582 + AluJ/FRAM SINE Alu 220 311 -1 548 239 15 58 chr1 135317778 135317894 -107346459 + L1M4 LINE L1 1468 1573 -4969 252 0 0 0 chr1 135317894 135317922 -107346431 + (TA)n Simple_repeat Simple_repeat 2 29 0 548 239 15 58 chr1 135317922 135318010 -107346343 + L1M4 LINE L1 1573 1663 -4879 230 279 59 0 chr1 135318014 135318082 -107346271 + MIR SINE MIR 53 124 -84 1949 119 7 36 chr1 135318085 135318387 -107345966 - AluSx SINE Alu -17 295 3 305 240 142 77 chr1 135318463 135318646 -107345707 + L1M4 LINE L1 1818 2012 -4813 443 239 0 22 chr1 135318648 135318740 -107345613 - MER8 DNA MER2_type 0 239 150 2438 94 0 0 chr1 135318833 135319141 -107345212 + AluSg SINE Alu 1 308 -2 1932 130 0 0 chr1 135319158 135319459 -107344894 + L1PA13 LINE L1 5862 6162 -1 423 0 0 0 chr1 135319755 135319802 -107344551 + (CA)n Simple_repeat Simple_repeat 2 48 0 372 138 0 0 chr1 135319948 135320013 -107344340 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 330 299 75 80 chr1 135320042 135320223 -107344130 + L2 LINE L2 2359 2539 -775 2347 71 0 3 chr1 135320223 135320506 -107343847 - AluSx SINE Alu -13 299 18 330 299 75 80 chr1 135320506 135320922 -107343431 + L2 LINE L2 2539 2953 -361 271 330 45 0 chr1 135321046 135321087 -107343266 + L2 LINE L2 3156 3194 -78 1234 238 58 50 chr1 135321087 135321550 -107342803 - MLT1C LTR MaLR 0 467 1 271 330 45 0 chr1 135321550 135321620 -107342733 + L2 LINE L2 3194 3272 0 2039 102 0 84 chr1 135321646 135321969 -107342384 + AluSx SINE Alu 1 296 -16 554 269 50 63 chr1 135321998 135322236 -107342117 - L3 LINE CR1 -101 1476 1242 2081 144 0 3 chr1 135322518 135322831 -107341522 - AluJo SINE Alu 0 312 1 725 132 21 28 chr1 135323518 135323662 -107340691 - L1P LINE L1 -806 5340 5198 2018 144 0 10 chr1 135324066 135324358 -107339995 + AluJb SINE Alu 5 293 -19 2028 193 52 32 chr1 135325011 135325473 -107338880 - MLT1D LTR MaLR 0 505 35 571 244 52 76 chr1 135325625 135325875 -107338478 + L1ME4a LINE L1 5683 5926 -195 1849 151 6 28 chr1 135326893 135327210 -107337143 + AluJb SINE Alu 1 310 -2 2463 86 0 0 chr1 135329229 135329533 -107334820 + AluSx SINE Alu 1 304 -8 4094 223 121 34 chr1 135331453 135332735 -107331618 + L1MDa LINE L1 18 1411 -5129 2375 98 0 0 chr1 135332735 135333040 -107331313 + AluY SINE Alu 1 305 -6 2289 165 82 52 chr1 135333073 135333558 -107330795 - MLT1D LTR MaLR 0 505 6 3230 161 66 34 chr1 135333623 135334351 -107330002 + L1MDa LINE L1 1467 2217 -4323 238 99 30 77 chr1 135334347 135334411 -107329942 + L1ME LINE L1 1386 1452 -5078 * 279 202 87 6 chr1 135334583 135334659 -107329694 - MLT1J LTR MaLR 0 511 446 228 213 0 0 chr1 135334723 135334770 -107329583 - MLT1L LTR MaLR -221 394 348 317 320 44 55 chr1 135335019 135335291 -107329062 + L2 LINE L2 723 991 -2323 227 255 0 0 chr1 135335317 135335368 -107328985 + L2 LINE L2 3245 3295 -18 1702 253 38 2 chr1 135335568 135335967 -107328386 - MER70B LTR ERVL -143 435 23 504 0 0 0 chr1 135335982 135336038 -107328315 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 687 300 48 4 chr1 135336038 135336268 -107328085 - MIR SINE MIR -21 241 2 1928 103 81 4 chr1 135336848 135337120 -107327233 + AluSx SINE Alu 1 293 -19 531 282 44 5 chr1 135338444 135338650 -107325703 - MIR SINE MIR -3 259 46 2644 47 0 0 chr1 135339095 135339392 -107324961 - AluY SINE Alu -14 297 1 2347 96 7 3 chr1 135339474 135339775 -107324578 - AluJb SINE Alu -10 302 1 1886 162 0 0 chr1 135340360 135340650 -107323703 + AluJb SINE Alu 1 290 -22 180 0 0 0 chr1 135342053 135342073 -107322280 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 463 322 109 14 chr1 135342280 135342345 -107322008 - L1MEd LINE L1 -4579 1731 1674 2703 84 20 0 chr1 135342345 135342702 -107321651 - THE1B LTR MaLR 0 364 1 463 322 109 14 chr1 135342702 135342919 -107321434 - L1MEd LINE L1 -4636 1674 1422 1599 119 22 14 chr1 135342970 135343254 -107321099 + MER1B DNA MER1_type 93 338 -1 858 294 65 47 chr1 135343265 135344107 -107320246 - L1MEd LINE L1 -4862 1257 521 1822 127 29 14 chr1 135344262 135344538 -107319815 + AluSg SINE Alu 19 298 -12 239 239 113 81 chr1 135344546 135344768 -107319585 - L1MEd LINE L1 -5869 250 22 241 308 50 25 chr1 135345533 135345653 -107318700 + MIR3 SINE MIR 77 199 -9 254 269 102 28 chr1 135346604 135346712 -107317641 - L2 LINE L2 -5 3308 3193 385 167 267 33 chr1 135346891 135347011 -107317342 + MER5A DNA MER1_type 35 182 -7 956 182 11 0 chr1 135347368 135347555 -107316798 + MER53 DNA DNA 1 189 0 580 185 23 12 chr1 135347639 135347812 -107316541 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 858 115 35 0 chr1 135347836 135348010 -107316343 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 714 104 49 10 chr1 135348033 135348329 -107316024 + (TGGA)n Simple_repeat Simple_repeat 1 307 0 772 275 135 30 chr1 135348708 135349165 -107315188 - MLT1E2 LTR MaLR 0 654 111 632 246 32 113 chr1 135349398 135349743 -107314610 - MLT1E2-int LTR MaLR -98 1273 957 1297 163 26 132 chr1 135349786 135350209 -107314144 - L1ME2 LINE L1 -263 5901 5524 222 229 66 16 chr1 135351168 135351229 -107313124 - MIR3 SINE MIR -7 201 138 557 229 105 51 chr1 135351830 135352094 -107312259 + LTR33 LTR ERVL 29 275 -248 507 48 0 0 chr1 135352610 135352673 -107311680 - AluS SINE Alu -249 64 2 22 35 0 0 chr1 135352676 135352705 -107311648 + AT_rich Low_complexity Low_complexity 1 29 0 1995 271 27 44 chr1 135352705 135353275 -107311078 + L1M4 LINE L1 3863 4415 -1731 2237 123 3 0 chr1 135353275 135353583 -107310770 + AluY SINE Alu 1 309 -2 1995 271 27 44 chr1 135353583 135353868 -107310485 + L1M4 LINE L1 4415 4703 -1443 766 166 0 19 chr1 135354000 135354157 -107310196 - L1P LINE L1 -1667 4479 4326 * 6880 23 0 0 chr1 135354150 135354933 -107309420 + L1P LINE L1 3544 4326 -1820 2978 294 127 40 chr1 135354958 135356746 -107307607 + L2 LINE L2 750 2795 -518 2317 113 0 0 chr1 135356746 135357047 -107307306 + AluSx SINE Alu 1 301 -11 2978 294 127 40 chr1 135357047 135357615 -107306738 + L2 LINE L2 2795 3312 -1 279 282 106 28 chr1 135357723 135357847 -107306506 - MIR SINE MIR -63 145 12 299 187 192 28 chr1 135358329 135358543 -107305810 + L1ME4a LINE L1 5870 6118 -3 200 188 0 0 chr1 135359184 135359216 -107305137 - MER5C DNA MER1_type -292 32 1 2413 86 0 26 chr1 135359474 135359787 -107304566 + AluSx SINE Alu 1 305 -7 364 363 65 0 chr1 135360516 135360684 -107303669 - MIR SINE MIR -24 238 60 255 278 82 10 chr1 135361334 135361431 -107302922 - MIR SINE MIR -14 248 145 452 174 9 73 chr1 135361695 135361733 -107302620 - MLT1D LTR MaLR 0 505 466 1734 157 102 3 chr1 135361733 135362065 -107302288 - MLT1A1 LTR MaLR 0 365 1 452 174 9 73 chr1 135362065 135362135 -107302218 - MLT1D LTR MaLR -39 466 404 351 176 24 35 chr1 135362170 135362255 -107302098 + MIR SINE MIR 145 228 -34 1281 198 114 12 chr1 135362521 135362854 -107301499 - MLT1D LTR MaLR -131 374 8 1986 121 0 68 chr1 135364109 135364432 -107299921 - AluSx SINE Alu -11 301 1 308 83 21 0 chr1 135364626 135364674 -107299679 + (CA)n Simple_repeat Simple_repeat 1 49 0 2209 100 21 0 chr1 135364966 135365257 -107299096 + AluSx SINE Alu 1 297 -15 226 253 13 13 chr1 135365499 135365574 -107298779 + CT-rich Low_complexity Low_complexity 4 78 0 221 277 147 51 chr1 135367436 135367790 -107296563 + L2 LINE L2 1686 2073 -1241 388 340 54 0 chr1 135368147 135368294 -107296059 - MIR SINE MIR -77 185 31 301 263 25 0 chr1 135368850 135368930 -107295423 - L1ME LINE L1 -438 5683 5602 238 254 15 0 chr1 135368994 135369061 -107295292 - L1ME LINE L1 -668 5453 5386 233 269 104 0 chr1 135369092 135369159 -107295194 + L2 LINE L2 3003 3076 -237 222 137 39 20 chr1 135369159 135369210 -107295143 + A-rich Low_complexity Low_complexity 4 55 0 428 197 131 33 chr1 135369214 135369397 -107294956 + L2 LINE L2 3101 3301 -12 2380 106 0 0 chr1 135369413 135369725 -107294628 - AluSx SINE Alu 0 312 1 2229 112 16 0 chr1 135369762 135370065 -107294288 - AluSx SINE Alu -4 308 1 533 255 144 0 chr1 135370178 135370331 -107294022 - MER5A DNA MER1_type -6 183 9 834 158 8 0 chr1 135370454 135370587 -107293766 + FLAM_A SINE Alu 8 141 -1 1637 262 64 60 chr1 135370678 135371298 -107293055 - L1ME LINE L1 -5171 899 274 2339 100 0 0 chr1 135371298 135371599 -107292754 - AluSx SINE Alu -11 301 1 1637 262 64 60 chr1 135371599 135371824 -107292529 - L1ME LINE L1 -5796 274 51 459 330 102 0 chr1 135371890 135372154 -107292199 - MLT1K LTR MaLR -167 421 131 2273 108 0 0 chr1 135372491 135372786 -107291567 - AluSq SINE Alu -14 299 5 1580 149 30 15 chr1 135373316 135373585 -107290768 - AluJb SINE Alu -7 305 33 408 307 32 11 chr1 135373840 135374062 -107290291 - L1M4c LINE L1 -4583 1875 1572 1892 175 48 44 chr1 135374066 135374524 -107289829 - MER66B LTR ERV1 0 486 27 431 250 106 80 chr1 135374537 135375087 -107289266 - L1M4c LINE L1 -4928 1635 896 7823 26 2 0 chr1 135375173 135376375 -107287978 - L1PA3 LINE L1 -1 6154 4952 769 22 0 0 chr1 135376375 135376465 -107287888 + L1PA3 LINE L1 4861 4950 -1196 727 137 34 8 chr1 135376472 135376589 -107287764 - FLAM_C SINE Alu -9 124 5 2432 113 0 19 chr1 135376810 135377174 -107287179 - L1PA11 LINE L1 0 6174 5818 272 202 34 11 chr1 135377463 135377552 -107286801 - L1M4 LINE L1 -2180 3966 3876 708 248 46 108 chr1 135377613 135377947 -107286406 - L1M4 LINE L1 -2683 3463 3110 2405 72 0 41 chr1 135377947 135378266 -107286087 - AluY SINE Alu -5 306 1 708 248 46 108 chr1 135378266 135378290 -107286063 - L1M4 LINE L1 -3036 3110 3086 2391 107 0 0 chr1 135378290 135378600 -107285753 - AluSq SINE Alu -3 310 1 708 248 46 108 chr1 135378600 135378718 -107285635 - L1M4 LINE L1 -3060 3086 2962 1566 198 4 4 chr1 135378718 135378976 -107285377 + AluJb SINE Alu 1 258 -54 708 248 46 108 chr1 135378976 135379337 -107285016 - L1M4 LINE L1 -3184 2962 2676 540 225 88 19 chr1 135380029 135380189 -107284164 - MIR SINE MIR -38 224 54 234 349 0 0 chr1 135380940 135381066 -107283287 + GA-rich Low_complexity Low_complexity 1 126 0 881 275 24 0 chr1 135381635 135381846 -107282507 - MER58A DNA MER1_type -8 216 1 2125 121 13 7 chr1 135381874 135382172 -107282181 - AluSx SINE Alu 0 312 13 244 185 37 0 chr1 135383129 135383183 -107281170 - L2 LINE L2 -1 3271 3216 21 36 0 0 chr1 135384105 135384133 -107280220 + AT_rich Low_complexity Low_complexity 1 28 0 2030 147 7 0 chr1 135384536 135384835 -107279518 + AluJb SINE Alu 1 301 -11 306 155 24 24 chr1 135384862 135384946 -107279407 + GA-rich Low_complexity Low_complexity 1 84 0 9720 142 37 3 chr1 135385088 135388426 -107275927 + L1PBa LINE L1 6 3657 -3205 317 176 0 0 chr1 135388631 135388682 -107275671 - AluJ/FRAM SINE Alu -25 277 227 1125 291 69 38 chr1 135388899 135389749 -107274604 - L1M4 LINE L1 -1252 4894 4018 1295 116 20 30 chr1 135389760 135389959 -107274394 - MER4B LTR ERV1 -6 604 408 5526 138 22 53 chr1 135389959 135390959 -107273394 - LTR5 LTR ERVK 0 969 1 470 311 83 22 chr1 135392365 135392642 -107271711 + LTR16C LTR ERVL 186 479 -12 2374 97 0 3 chr1 135393921 135394230 -107270123 - AluSg SINE Alu -2 308 1 2482 39 0 3 chr1 135394243 135394553 -107269800 - AluY SINE Alu 0 309 1 22 94 0 0 chr1 135394908 135394972 -107269381 + AT_rich Low_complexity Low_complexity 1 64 0 355 247 89 14 chr1 135395169 135395315 -107269038 - L1ME4a LINE L1 -1 6120 5964 1176 183 0 0 chr1 135395404 135395595 -107268758 + AluSx SINE Alu 5 195 -117 2388 93 3 0 chr1 135396110 135396420 -107267933 - AluSp SINE Alu -2 311 1 302 188 29 0 chr1 135396735 135396804 -107267549 - MIR SINE MIR -76 186 116 24 0 0 0 chr1 135396980 135397004 -107267349 + AT_rich Low_complexity Low_complexity 1 24 0 225 305 61 12 chr1 135397023 135397187 -107267166 - L1M4 LINE L1 -960 5186 5015 722 309 90 63 chr1 135397402 135398233 -107266120 - L1M4 LINE L1 -1387 4759 3906 2027 186 36 75 chr1 135398290 135398823 -107265530 + LTR40a LTR ERVL 1 512 -7 1784 174 3 20 chr1 135398824 135399122 -107265231 - AluJo SINE Alu -19 293 1 227 315 62 0 chr1 135399145 135399291 -107265062 - L1M4 LINE L1 -2385 3761 3607 318 154 0 0 chr1 135399437 135399489 -107264864 + Alu SINE Alu 245 296 -6 186 118 0 0 chr1 135399734 135399768 -107264585 + (TC)n Simple_repeat Simple_repeat 2 35 0 372 295 108 48 chr1 135399800 135400153 -107264200 - L1M4 LINE L1 -2968 3178 2805 22 0 0 0 chr1 135400199 135400221 -107264132 + AT_rich Low_complexity Low_complexity 1 22 0 34 93 0 0 chr1 135400716 135400813 -107263540 + AT_rich Low_complexity Low_complexity 1 97 0 3907 128 3 3 chr1 135400815 135401422 -107262931 - L1MA1 LINE L1 -4 6298 5692 381 223 92 76 chr1 135401944 135402128 -107262225 - MIR3 SINE MIR -6 202 16 256 99 84 56 chr1 135402392 135402463 -107261890 - L1M2c LINE L1 -4548 2241 2169 2656 45 0 0 chr1 135403823 135404133 -107260220 - AluY SINE Alu 0 311 2 192 324 69 20 chr1 135404384 135404486 -107259867 + MER5A DNA MER1_type 48 154 -35 229 230 10 130 chr1 135404656 135404756 -107259597 - MIR SINE MIR -97 111 24 381 266 223 0 chr1 135405036 135405220 -107259133 + MIR SINE MIR 23 247 -15 268 250 189 7 chr1 135405214 135405362 -107258991 - MIR SINE MIR -2 260 86 * 342 253 63 0 chr1 135405569 135405664 -107258689 + MIR SINE MIR 84 184 -78 2228 230 86 6 chr1 135407230 135407744 -107256609 - MLT1H1 LTR MaLR 0 555 1 267 247 76 143 chr1 135407770 135408098 -107256255 - MLT1H1-int LTR MaLR -30 1341 1036 400 260 91 37 chr1 135408298 135408594 -107255759 - MLT1H1-int LTR MaLR -928 443 1 2283 222 39 12 chr1 135408594 135409112 -107255241 - MLT1H1 LTR MaLR 0 555 24 408 276 63 40 chr1 135410003 135410177 -107254176 + MIR3 SINE MIR 22 199 -9 3871 260 112 28 chr1 135410251 135412162 -107252191 - L2 LINE L2 0 3313 1234 895 266 69 18 chr1 135412511 135412832 -107251521 - MLT1I LTR MaLR -18 391 67 432 200 0 0 chr1 135414503 135414578 -107249775 + MER116 DNA Mariner 1 75 -5 286 217 14 14 chr1 135415511 135415580 -107248773 - tRNA-Gly-GGG tRNA tRNA -3 71 3 390 153 0 0 chr1 135416412 135416471 -107247882 + tRNA-Gly-GGG tRNA tRNA 1 59 -15 3521 98 93 35 chr1 135416548 135417169 -107247184 - MER51D LTR ERV1 0 657 1 220 206 29 15 chr1 135417866 135417934 -107246419 + (TA)n Simple_repeat Simple_repeat 2 70 0 580 227 0 0 chr1 135418042 135418152 -107246201 + FLAM_A SINE Alu 4 113 -29 2372 102 3 0 chr1 135418152 135418456 -107245897 - AluSx SINE Alu -7 305 1 371 369 23 14 chr1 135418640 135418857 -107245496 + MIR SINE MIR 42 260 -2 31 44 0 0 chr1 135418858 135418903 -107245450 + AT_rich Low_complexity Low_complexity 1 45 0 719 227 66 0 chr1 135418931 135419134 -107245219 - L1ME2 LINE L1 -88 6074 5855 1844 154 17 17 chr1 135419216 135419515 -107244838 - AluJb SINE Alu -13 299 1 722 279 59 42 chr1 135419992 135420496 -107243857 - L2 LINE L2 -290 2982 2474 2001 88 0 8 chr1 135422307 135422570 -107241783 + AluY SINE Alu 33 293 -18 623 153 0 2 chr1 135422896 135423143 -107241210 + AluJb SINE Alu 3 297 -15 386 281 129 22 chr1 135423209 135423485 -107240868 - L1ME2 LINE L1 -512 5650 5337 9369 155 8 13 chr1 135423627 135425572 -107238781 + L1PB1 LINE L1 3551 5478 -673 194 0 39 0 chr1 135425572 135425598 -107238755 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9369 155 8 13 chr1 135425598 135426269 -107238084 + L1PB1 LINE L1 5478 6151 0 2484 73 10 0 chr1 135426367 135426670 -107237683 + AluY SINE Alu 1 306 -5 442 276 60 25 chr1 135426670 135426869 -107237484 + L1MC4 LINE L1 7698 7903 -139 282 226 152 103 chr1 135427015 135427219 -107237134 + HAL1 LINE L1 2 215 -2292 526 322 203 21 chr1 135429150 135430180 -107234173 - L2 LINE L2 -873 2441 1225 2015 136 36 0 chr1 135430696 135430997 -107233356 - AluJb SINE Alu 0 312 1 248 259 167 19 chr1 135431007 135431115 -107233238 + MIR SINE MIR 100 223 -39 2431 83 0 3 chr1 135431557 135431857 -107232496 + AluSq SINE Alu 1 299 -14 392 260 107 13 chr1 135431937 135432087 -107232266 - MIR SINE MIR 0 262 99 196 231 0 39 chr1 135432714 135432766 -107231587 - MIR3 SINE MIR -7 201 152 661 219 0 0 chr1 135432766 135432880 -107231473 - MER81 DNA DNA 0 114 1 509 209 0 0 chr1 135433298 135433389 -107230964 + AluJ/FRAM SINE Alu 220 310 -2 590 238 42 26 chr1 135433396 135433500 -107230853 + L1M4 LINE L1 1468 1578 -4964 198 0 0 0 chr1 135433500 135433522 -107230831 + (TA)n Simple_repeat Simple_repeat 2 23 0 590 238 42 26 chr1 135433522 135433610 -107230743 + L1M4 LINE L1 1578 1663 -4879 230 279 59 0 chr1 135433614 135433682 -107230671 + MIR SINE MIR 53 124 -84 1955 120 7 33 chr1 135433685 135433986 -107230367 - AluSx SINE Alu -17 295 3 321 235 142 77 chr1 135434062 135434245 -107230108 + L1M4 LINE L1 1818 2012 -4813 431 230 0 23 chr1 135434247 135434334 -107230019 - MER8 DNA MER2_type 0 239 155 2691 42 0 0 chr1 135434336 135434642 -107229711 + AluY SINE Alu 1 306 -5 2419 100 0 0 chr1 135434742 135435052 -107229301 + AluSg SINE Alu 1 310 0 1927 133 0 0 chr1 135435072 135435373 -107228980 + L1PA13 LINE L1 5862 6162 -1 297 0 0 0 chr1 135435669 135435702 -107228651 + (CA)n Simple_repeat Simple_repeat 2 34 0 300 158 0 0 chr1 135435848 135435905 -107228448 + (TGAA)n Simple_repeat Simple_repeat 2 58 0 342 293 79 84 chr1 135435934 135436115 -107228238 + L2 LINE L2 2359 2539 -775 2323 75 0 3 chr1 135436115 135436397 -107227956 - AluSx SINE Alu -14 298 18 342 293 79 84 chr1 135436397 135436813 -107227540 + L2 LINE L2 2539 2953 -361 1326 238 60 44 chr1 135436978 135437432 -107226921 - MLT1C LTR MaLR 0 467 7 259 284 40 0 chr1 135437437 135437511 -107226842 + L2 LINE L2 3196 3272 0 2033 96 0 105 chr1 135437537 135437871 -107226482 + AluSx SINE Alu 1 299 -13 296 286 0 48 chr1 135437900 135437984 -107226369 - L3 LINE CR1 -101 1476 1397 225 167 0 0 chr1 135438580 135438616 -107225737 + L1PA12 LINE L1 1354 1389 -6192 369 256 60 8 chr1 135438689 135438806 -107225547 - L2 LINE L2 -16 3297 3175 1693 138 130 0 chr1 135439651 135439927 -107224426 + AluJo SINE Alu 1 312 0 228 282 46 82 chr1 135441141 135441261 -107223092 + MIR3 SINE MIR 15 127 -81 2251 114 0 3 chr1 135441261 135441558 -107222795 - AluSx SINE Alu -10 302 7 228 282 46 82 chr1 135441558 135441632 -107222721 + MIR3 SINE MIR 127 202 -6 1870 203 112 24 chr1 135441851 135442314 -107222039 + MLT1D LTR MaLR 1 504 -1 491 281 50 50 chr1 135442339 135442406 -107221947 - L1ME4a LINE L1 -236 5885 5819 2691 129 25 53 chr1 135442406 135442773 -107221580 - L1MB3 LINE L1 -3 6180 5829 2423 86 0 0 chr1 135442773 135443065 -107221288 - AluSg SINE Alu -14 296 5 2691 129 25 53 chr1 135443065 135443207 -107221146 - L1MB3 LINE L1 -354 5829 5685 491 281 50 50 chr1 135443207 135443420 -107220933 - L1ME4a LINE L1 -301 5820 5605 24 0 0 0 chr1 135443468 135443492 -107220861 + AT_rich Low_complexity Low_complexity 1 24 0 270 211 0 28 chr1 135444318 135444389 -107219964 + MIR SINE MIR 60 128 -134 380 311 16 36 chr1 135444749 135444942 -107219411 - MIR SINE MIR 0 262 74 337 300 117 20 chr1 135445428 135445675 -107218678 + L1ME4a LINE L1 5560 5830 -291 1084 221 5 9 chr1 135445691 135445904 -107218449 + MER58A DNA MER1_type 13 224 0 392 242 61 74 chr1 135446014 135446138 -107218215 - L1ME4a LINE L1 -170 5951 5830 2247 108 0 3 chr1 135446138 135446435 -107217918 - AluSc SINE Alu -13 296 1 392 242 61 74 chr1 135446435 135446541 -107217812 - L1ME4a LINE L1 -291 5830 5724 2255 149 27 3 chr1 135448725 135449100 -107215253 + MLT1B LTR MaLR 1 384 -6 425 147 156 9 chr1 135449767 135449876 -107214477 + MIR SINE MIR 13 137 -125 212 304 144 8 chr1 135449975 135450100 -107214253 + MIR SINE MIR 114 255 -7 1142 126 39 0 chr1 135450826 135451008 -107213345 - MER53 DNA DNA 0 189 1 382 276 138 10 chr1 135451226 135451429 -107212924 + L1M4 LINE L1 4639 4867 -1279 737 280 60 8 chr1 135451473 135451723 -107212630 + LTR16A LTR ERVL 180 442 -8 734 184 3 23 chr1 135451899 135452049 -107212304 + MLT1F LTR MaLR 400 542 0 415 340 139 3 chr1 135452081 135452413 -107211940 + HAL1b LINE L1 445 821 -527 1184 171 5 28 chr1 135452759 135452976 -107211377 - AluJb SINE Alu -16 296 85 538 88 0 0 chr1 135452976 135453044 -107211309 - AluSx SINE Alu -62 248 181 874 124 0 0 chr1 135453046 135453159 -107211194 - AluSx SINE Alu -200 113 1 953 171 5 4 chr1 135453248 135453458 -107210895 - AluJb SINE Alu -11 301 1 888 270 98 30 chr1 135453471 135453931 -107210422 - HAL1 LINE L1 -847 1660 1170 * 2937 171 36 64 chr1 135453927 135454641 -107209712 - L1MB8 LINE L1 -1 6177 5484 377 290 127 27 chr1 135454760 135454981 -107209372 - HAL1 LINE L1 -1422 1085 843 369 0 0 0 chr1 135455104 135455145 -107209208 + (TC)n Simple_repeat Simple_repeat 2 42 0 303 350 7 7 chr1 135455175 135455312 -107209041 + L2 LINE L2 2150 2286 -1028 475 255 40 60 chr1 135455317 135455517 -107208836 + L2 LINE L2 3118 3313 0 328 278 101 68 chr1 135455951 135456199 -107208154 - MIR SINE MIR 0 262 7 202 219 0 0 chr1 135456417 135456458 -107207895 - MIR SINE MIR 0 262 222 344 279 110 50 chr1 135456946 135457283 -107207070 + L1ME4a LINE L1 5559 5915 -206 2141 114 0 10 chr1 135457637 135457935 -107206418 - AluSx SINE Alu -17 295 1 1442 276 145 13 chr1 135458374 135459347 -107205006 - L2 LINE L2 -1 3312 2220 934 130 0 0 chr1 135459377 135459500 -107204853 - FLAM_C SINE Alu -20 123 1 717 254 34 26 chr1 135459516 135459629 -107204724 - L2 LINE L2 -1104 2210 2099 2161 137 3 6 chr1 135459629 135459942 -107204411 + AluSx SINE Alu 1 312 0 717 254 34 26 chr1 135459942 135460092 -107204261 - L2 LINE L2 -1215 2099 1945 1064 171 81 53 chr1 135460106 135460352 -107204001 + L1MD2 LINE L1 4771 5023 -1123 * 2103 199 31 4 chr1 135460348 135460854 -107203499 + L1MD2 LINE L1 5254 5962 -397 365 291 89 28 chr1 135461014 135461193 -107203160 - L2 LINE L2 -209 3063 2874 219 232 174 0 chr1 135461780 135461849 -107202504 - MIR SINE MIR -165 97 17 201 309 107 0 chr1 135462647 135462731 -107201622 + MIR SINE MIR 31 123 -85 2212 110 0 0 chr1 135462968 135463258 -107201095 + AluSx SINE Alu 1 290 -22 237 256 12 49 chr1 135463312 135463394 -107200959 + (TGGG)n Simple_repeat Simple_repeat 1 79 0 430 156 33 44 chr1 135463429 135463609 -107200744 + GA-rich Low_complexity Low_complexity 1 178 0 541 132 0 69 chr1 135463645 135463834 -107200519 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 251 140 19 56 chr1 135463835 135463942 -107200411 + GA-rich Low_complexity Low_complexity 2 104 0 355 164 0 0 chr1 135464063 135464124 -107200229 + AluS SINE Alu 228 288 -12 312 172 0 0 chr1 135464134 135464192 -107200161 + (TA)n Simple_repeat Simple_repeat 2 59 0 2192 102 28 0 chr1 135464193 135464477 -107199876 - AluSg1 SINE Alu -17 292 1 180 307 27 0 chr1 135464701 135464776 -107199577 + MIR SINE MIR 175 251 -11 256 241 309 36 chr1 135465390 135465726 -107198627 - L2 LINE L2 -338 2976 2549 245 310 113 52 chr1 135465730 135465943 -107198410 - L3 LINE CR1 -899 678 453 185 270 0 63 chr1 135467186 135467249 -107197104 - L3 LINE CR1 -2 1575 1517 2209 131 20 0 chr1 135467361 135467667 -107196686 - AluSx SINE Alu 0 312 1 590 309 40 16 chr1 135467767 135468016 -107196337 + MIR SINE MIR 8 262 0 677 277 40 5 chr1 135468323 135468525 -107195828 - MIR SINE MIR -6 256 48 935 190 15 15 chr1 135468527 135468722 -107195631 - MER3 DNA MER1_type 0 209 15 229 279 29 0 chr1 135468749 135468817 -107195536 - MER5A DNA MER1_type -51 138 69 191 306 57 48 chr1 135468834 135468958 -107195395 + MIR3 SINE MIR 5 129 -79 218 318 0 0 chr1 135469501 135469567 -107194786 - MER5B DNA MER1_type -40 138 73 523 265 53 106 chr1 135469664 135470041 -107194312 + MLT1J LTR MaLR 6 362 -149 500 83 69 0 chr1 135470326 135470398 -107193955 - L1PA11 LINE L1 0 6174 6098 1445 159 60 126 chr1 135470694 135471114 -107193239 + MSTD LTR MaLR 5 396 0 2746 192 21 67 chr1 135471201 135472178 -107192175 - L1M4 LINE L1 -3333 3049 2122 22363 28 2 0 chr1 135472178 135475615 -107188738 - L1PA2 LINE L1 0 6155 2752 663 221 52 39 chr1 135475985 135476216 -107188137 + L1ME LINE L1 1327 1641 -5306 14481 121 26 12 chr1 135476280 135478430 -107185923 - Tigger1 DNA MER2_type 0 2418 235 2217 128 50 8 chr1 135478430 135478790 -107185563 - THE1C LTR MaLR 0 375 1 14481 121 26 12 chr1 135478790 135478843 -107185510 - Tigger1 DNA MER2_type -2183 235 184 731 206 0 0 chr1 135478849 135478975 -107185378 + FLAM_C SINE Alu 6 131 -12 984 185 26 16 chr1 135478975 135479164 -107185189 - Tigger1 DNA MER2_type -2227 191 1 1283 251 49 108 chr1 135479164 135480018 -107184335 + L1ME LINE L1 1981 2884 -4254 2343 96 0 0 chr1 135480018 135480309 -107184044 + AluSx SINE Alu 1 291 -21 1283 251 49 108 chr1 135480309 135480488 -107183865 + L1ME LINE L1 2884 2984 -4154 2220 90 40 3 chr1 135480488 135480788 -107183565 + AluY SINE Alu 1 311 0 1283 251 49 108 chr1 135480788 135480843 -107183510 + L1ME LINE L1 2984 3041 -4097 607 85 0 0 chr1 135480853 135480935 -107183418 + AluY SINE Alu 8 89 -222 254 196 49 18 chr1 135481036 135481199 -107183154 + (TTGG)n Simple_repeat Simple_repeat 4 171 0 * 708 125 28 23 chr1 135481182 135481358 -107182995 + (GCTG)n Simple_repeat Simple_repeat 4 180 0 314 195 133 94 chr1 135482581 135482660 -107181693 - MIR SINE MIR -17 245 158 1873 167 10 7 chr1 135482660 135482966 -107181387 - AluSx SINE Alu -5 307 1 314 195 133 94 chr1 135482966 135483014 -107181339 - MIR SINE MIR -104 158 113 6193 98 17 6 chr1 135483097 135483958 -107180395 - THE1B-int LTR MaLR -709 871 1 2136 123 53 36 chr1 135483958 135484316 -107180037 - THE1B LTR MaLR 0 364 1 955 202 12 0 chr1 135484317 135484485 -107179868 - Charlie1 DNA MER1_type -2590 171 2 664 234 155 9 chr1 135484514 135484740 -107179613 + MIR SINE MIR 4 262 0 1902 143 31 14 chr1 135485746 135486040 -107178313 + AluJb SINE Alu 1 299 -13 1131 256 80 26 chr1 135486091 135486615 -107177738 - L1MD2 LINE L1 -505 5854 5263 2197 125 0 13 chr1 135486666 135486969 -107177384 - AluSx SINE Alu -13 299 1 273 283 92 40 chr1 135487073 135487345 -107177008 - L1MD2 LINE L1 -1082 5064 4779 735 235 92 92 chr1 135488228 135488509 -107175844 - AluJb SINE Alu -30 282 2 240 226 24 14 chr1 135488514 135488605 -107175748 - L1MD2 LINE L1 -3935 2251 2117 1383 224 47 99 chr1 135489536 135489994 -107174359 - L1M4 LINE L1 -1175 4971 4564 2062 199 34 75 chr1 135489994 135490385 -107173968 - MLT1F LTR MaLR 0 542 179 2119 134 0 0 chr1 135490385 135490683 -107173670 + AluSg SINE Alu 1 298 -12 2062 199 34 75 chr1 135490683 135490854 -107173499 - MLT1F LTR MaLR -363 179 3 1383 224 47 99 chr1 135490854 135491133 -107173220 - L1M4 LINE L1 -1582 4564 4272 2083 127 7 0 chr1 135491138 135491429 -107172924 - AluSx SINE Alu -19 293 1 437 285 70 49 chr1 135491483 135491764 -107172589 - L1M4 LINE L1 -2422 3724 3433 2117 91 4 0 chr1 135491764 135492027 -107172326 - AluSp SINE Alu -15 298 35 437 285 70 49 chr1 135492027 135492089 -107172264 - L1M4 LINE L1 -2713 3433 3374 1504 176 66 24 chr1 135492174 135492351 -107172002 - AluJo SINE Alu -11 301 106 234 0 0 0 chr1 135492351 135492377 -107171976 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1504 176 66 24 chr1 135492377 135492488 -107171865 - AluJo SINE Alu -206 106 1 289 235 33 64 chr1 135492516 135492678 -107171675 - L1ME4a LINE L1 0 6060 1187 391 249 24 117 chr1 135492678 135492795 -107171558 - L1MC4a LINE L1 -1879 5929 5846 2131 116 0 7 chr1 135492795 135493087 -107171266 - AluSg SINE Alu -20 290 1 391 249 24 117 chr1 135493087 135493218 -107171135 - L1MC4a LINE L1 -1962 5846 5704 560 250 136 34 chr1 135494143 135494379 -107169974 + MIR SINE MIR 1 260 -2 705 176 8 23 chr1 135494423 135494554 -107169799 + FLAM_C SINE Alu 2 130 -3 522 254 107 24 chr1 135494568 135494916 -107169437 - MLT1J LTR MaLR -33 478 62 488 289 147 19 chr1 135494955 135495315 -107169038 - MLT1I LTR MaLR 0 409 4 303 278 19 37 chr1 135495329 135495437 -107168916 + MIR SINE MIR 78 183 -79 234 204 184 19 chr1 135496743 135496846 -107167507 - MER5B DNA MER1_type 0 178 59 622 239 42 0 chr1 135497043 135497185 -107167168 + MER5A DNA MER1_type 2 149 -40 2901 181 19 8 chr1 135497315 135497828 -107166525 - MER44D DNA MER2_type 0 605 32 682 218 67 22 chr1 135498026 135498205 -107166148 - MER5A DNA MER1_type 0 189 3 362 272 0 11 chr1 135498241 135498333 -107166020 + MER5A DNA MER1_type 19 109 -80 3546 136 40 2 chr1 135498779 135499360 -107164993 + LTR26 LTR ERV1 1 603 0 247 358 0 34 chr1 135501105 135501284 -107163069 + GA-rich Low_complexity Low_complexity 4 176 0 219 372 0 33 chr1 135501413 135501593 -107162760 + G-rich Low_complexity Low_complexity 4 177 0 270 288 0 0 chr1 135501966 135502039 -107162314 + tRNA-Gly-GGC tRNA tRNA 1 73 -1 288 265 133 0 chr1 135503193 135503291 -107161062 + FLAM_C SINE Alu 2 112 -21 376 480 6 11 chr1 135504241 135504420 -107159933 + polypurine Low_complexity Low_complexity 1 178 0 322 322 23 11 chr1 135504433 135504607 -107159746 + GA-rich Low_complexity Low_complexity 1 176 0 442 396 6 6 chr1 135504608 135504767 -107159586 + polypurine Low_complexity Low_complexity 1 159 0 368 250 51 6 chr1 135504768 135504924 -107159429 + GA-rich Low_complexity Low_complexity 1 163 0 252 398 12 0 chr1 135504924 135505007 -107159346 + polypurine Low_complexity Low_complexity 1 84 0 294 262 16 24 chr1 135505011 135505266 -107159087 + GA-rich Low_complexity Low_complexity 1 253 0 2081 196 203 24 chr1 135508455 135509006 -107155347 - MLT1E1 LTR MaLR 0 654 5 1857 128 17 10 chr1 135510400 135510689 -107153664 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr1 135510734 135510754 -107153599 + (CAA)n Simple_repeat Simple_repeat 2 21 0 945 235 144 16 chr1 135510768 135511282 -107153071 + L1M4 LINE L1 2721 3300 -2846 15299 51 3 10 chr1 135511410 135513383 -107150970 - L1P LINE L1 -886 5260 3301 569 242 8 8 chr1 135513683 135513811 -107150542 - Charlie1 DNA MER1_type -2603 158 31 552 270 150 18 chr1 135513867 135514093 -107150260 + MIR SINE MIR 4 259 -3 1794 139 31 14 chr1 135515102 135515396 -107148957 + AluJb SINE Alu 1 299 -13 285 225 50 12 chr1 135515430 135515510 -107148843 - L1ME LINE L1 -297 5873 5791 1089 250 50 27 chr1 135515594 135515970 -107148383 - L1ME LINE L1 -523 5647 5263 1237 145 0 20 chr1 135516015 135516215 -107148138 - AluSg/x SINE Alu -4 308 113 182 167 0 56 chr1 135516775 135516811 -107147542 + L3 LINE CR1 1541 1574 -3 263 313 0 0 chr1 135516835 135516918 -107147435 + MIR SINE MIR 160 242 -20 950 186 60 15 chr1 135517438 135517637 -107146716 - MER3 DNA MER1_type 0 209 2 1270 159 28 5 chr1 135517691 135517905 -107146448 - MER20 DNA MER1_type 0 219 1 262 255 66 75 chr1 135518462 135518568 -107145785 + L2 LINE L2 3150 3254 -18 603 230 203 0 chr1 135518626 135518774 -107145579 + MER5A DNA MER1_type 12 189 0 1022 199 5 9 chr1 135519183 135519399 -107144954 + AluY SINE Alu 95 309 -2 253 157 20 0 chr1 135519407 135519458 -107144895 + L1ME4a LINE L1 2375 2426 -3958 2131 69 0 43 chr1 135519460 135519763 -107144590 + AluY SINE Alu 1 290 -21 566 200 17 46 chr1 135519811 135519986 -107144367 + L1ME4a LINE L1 5497 5666 -732 518 233 89 74 chr1 135520026 135520168 -107144185 + MIR SINE MIR 1 150 -112 270 0 0 0 chr1 135520168 135520198 -107144155 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 518 233 89 74 chr1 135520198 135520313 -107144040 + MIR SINE MIR 150 262 0 1892 128 3 3 chr1 135520365 135520668 -107143685 + AluSx SINE Alu 1 303 0 1960 137 3 3 chr1 135521540 135521847 -107142506 + AluSx SINE Alu 3 309 -3 266 279 96 44 chr1 135522780 135523031 -107141322 + L1ME1 LINE L1 4801 5064 -1082 1556 175 0 40 chr1 135523135 135523438 -107140915 + AluSx SINE Alu 1 291 -21 593 171 16 31 chr1 135523447 135523576 -107140777 + L1MD3 LINE L1 7859 7985 -10 534 57 0 0 chr1 135524203 135524273 -107140080 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 349 181 170 0 chr1 135524404 135524498 -107139855 - MER113 DNA MER1_type? -207 314 205 2272 235 53 2 chr1 135524616 135525264 -107139089 + L1ME1 LINE L1 5424 6144 -36 374 218 118 18 chr1 135525758 135525868 -107138485 - MER96 DNA MER1_type? -2 173 53 202 295 84 32 chr1 135526067 135526162 -107138191 - L2 LINE L2 -215 3098 2999 197 263 13 105 chr1 135526537 135526613 -107137740 - L2 LINE L2 -1 3271 3203 276 260 126 8 chr1 135527468 135527595 -107136758 + L1ME4a LINE L1 5834 5975 -382 911 278 87 23 chr1 135527656 135528048 -107136305 + L1MC4a LINE L1 5518 5934 -1874 388 234 62 31 chr1 135528059 135528097 -107136256 - MIR SINE MIR -6 256 221 1956 148 3 0 chr1 135528097 135528408 -107135945 - AluSx SINE Alu 0 312 1 388 234 62 31 chr1 135528408 135528497 -107135856 - MIR SINE MIR -41 221 125 426 275 73 34 chr1 135528544 135528722 -107135631 + L2 LINE L2 3124 3308 -5 268 223 86 36 chr1 135528885 135529024 -107135329 + L1ME4a LINE L1 6053 6198 -159 1259 181 100 22 chr1 135529184 135529455 -107134898 + AluJo SINE Alu 1 292 -10 214 211 0 0 chr1 135529455 135529493 -107134860 + (TA)n Simple_repeat Simple_repeat 1 38 0 464 235 143 37 chr1 135529689 135529906 -107134447 - L1ME4a LINE L1 -233 5888 5649 217 323 0 0 chr1 135531076 135531138 -107133215 - MER5A DNA MER1_type 0 189 128 306 292 50 42 chr1 135531308 135531428 -107132925 + MIR SINE MIR 58 178 -84 27 0 0 0 chr1 135532386 135532413 -107131940 + AT_rich Low_complexity Low_complexity 1 27 0 2939 26 3 6 chr1 135532413 135532760 -107131593 - L1PA5 LINE L1 -5 6149 5804 882 10 0 0 chr1 135532789 135532890 -107131463 + L1P2 LINE L1 5708 5808 -347 250 290 92 53 chr1 135532913 135533044 -107131309 - MIR3 SINE MIR -36 172 37 254 283 76 11 chr1 135533500 135533592 -107130761 - L2 LINE L2 -2 3311 3214 976 173 39 0 chr1 135534122 135534301 -107130052 - AluJ SINE Alu -9 303 118 287 152 0 152 chr1 135534314 135534459 -107129894 - AluJ SINE Alu -169 133 11 454 127 0 0 chr1 135535047 135535118 -107129235 + AluSp/q SINE Alu 230 300 -13 277 258 36 85 chr1 135535123 135535153 -107129200 + L1M4 LINE L1 3117 3147 -2999 2216 74 0 58 chr1 135535153 135535479 -107128874 + AluY SINE Alu 1 307 -4 277 258 36 85 chr1 135535479 135535813 -107128540 + L1M4 LINE L1 3147 3463 -2683 265 202 34 11 chr1 135535874 135535963 -107128390 + L1M4 LINE L1 3876 3966 -2180 2420 115 0 19 chr1 135536252 135536616 -107127737 + L1PA11 LINE L1 5818 6174 0 734 137 34 8 chr1 135536839 135536956 -107127397 + FLAM_C SINE Alu 5 124 -9 782 11 0 0 chr1 135536963 135537053 -107127300 - L1PA3 LINE L1 -1196 4950 4861 7829 19 0 0 chr1 135537053 135538276 -107126077 + L1PA3 LINE L1 4952 6174 0 1932 214 27 40 chr1 135538291 135539275 -107125078 + L1M4c LINE L1 2120 3049 -3333 1419 159 59 130 chr1 135539362 135539784 -107124569 - MSTD LTR MaLR 0 396 5 501 83 69 0 chr1 135540080 135540152 -107124201 + L1PA11 LINE L1 6098 6174 0 553 268 53 106 chr1 135540437 135540814 -107123539 - MLT1J LTR MaLR -149 362 6 261 284 61 40 chr1 135540887 135541013 -107123340 + MER5B DNA MER1_type 39 185 -4 226 303 46 55 chr1 135541523 135541632 -107122721 - MIR SINE MIR -79 129 22 253 283 29 5 chr1 135541664 135541747 -107122606 + MER5A DNA MER1_type 68 141 -37 927 190 15 15 chr1 135541759 135541954 -107122399 + MER3 DNA MER1_type 15 209 0 749 282 40 5 chr1 135541956 135542158 -107122195 + MIR SINE MIR 48 256 -6 671 311 40 16 chr1 135542465 135542713 -107121640 - MIR SINE MIR 0 262 9 2014 115 21 0 chr1 135542814 135543120 -107121233 + AluSx SINE Alu 1 312 0 210 270 0 63 chr1 135543232 135543295 -107121058 + L3 LINE CR1 1517 1575 -2 339 305 113 52 chr1 135544537 135544750 -107119603 + L3 LINE CR1 453 678 -899 385 241 309 36 chr1 135544754 135545090 -107119263 + L2 LINE L2 2549 2976 -338 276 330 21 0 chr1 135545695 135545792 -107118561 - MIR SINE MIR -2 260 162 1817 100 0 4 chr1 135546003 135546254 -107118099 + AluSg1 SINE Alu 1 250 -59 737 182 187 30 chr1 135546992 135547158 -107117195 + MIR SINE MIR 7 212 -50 2621 125 33 21 chr1 135547158 135547581 -107116772 - MSTA LTR MaLR 0 428 1 737 182 187 30 chr1 135547581 135547617 -107116736 + MIR SINE MIR 212 241 -21 1394 218 126 6 chr1 135547723 135548081 -107116272 + MLT1D LTR MaLR 3 403 -102 820 132 7 21 chr1 135548105 135548249 -107116104 - FLAM_C SINE Alu -1 142 1 682 193 66 36 chr1 135548255 135548421 -107115932 - MLT1B LTR MaLR -219 171 1 352 243 65 9 chr1 135548535 135548642 -107115711 - MIR SINE MIR -70 192 80 1830 170 26 26 chr1 135549649 135549676 -107114677 - MER7A DNA MER2_type -2693 345 319 2116 66 0 90 chr1 135549676 135550011 -107114342 - AluY SINE Alu -6 305 1 1830 170 26 26 chr1 135550011 135550330 -107114023 - MER7A DNA MER2_type -2718 320 1 497 231 255 53 chr1 135550435 135550717 -107113636 + MER102b DNA MER1_type 3 341 0 215 132 26 0 chr1 135550717 135550755 -107113598 + MIR SINE MIR 102 140 -122 1731 161 30 7 chr1 135550762 135551066 -107113287 + L1MB7 LINE L1 5856 6166 -18 190 284 40 14 chr1 135551419 135551493 -107112860 - MIR SINE MIR -61 201 126 577 314 28 8 chr1 135551670 135551922 -107112431 + MIR SINE MIR 3 259 -3 1990 119 3 3 chr1 135553513 135553807 -107110546 + AluSx SINE Alu 3 296 -16 648 14 0 0 chr1 135555615 135555689 -107108664 - tRNA-Gly-GGC tRNA tRNA 0 74 1 538 70 0 0 chr1 135556431 135556502 -107107851 - tRNA-Gly-GGC tRNA tRNA -3 71 1 207 182 0 0 chr1 135556859 135556892 -107107461 + L2 LINE L2 3259 3291 -22 223 283 75 100 chr1 135556927 135557047 -107107306 - L3 LINE CR1 -107 1470 1354 289 352 62 33 chr1 135557998 135558411 -107105942 + L2 LINE L2 2649 3157 -115 228 314 119 22 chr1 135558599 135558733 -107105620 - MIR SINE MIR -65 143 20 277 205 205 0 chr1 135559626 135559738 -107104615 + MER5C DNA MER1_type 136 270 -54 24 0 0 0 chr1 135560515 135560539 -107103814 + AT_rich Low_complexity Low_complexity 1 24 0 1373 241 67 39 chr1 135562483 135562973 -107101380 - MLT1H LTR MaLR 0 549 46 2301 142 33 26 chr1 135563809 135564232 -107100121 - MSTB LTR MaLR 0 426 1 403 302 66 11 chr1 135564506 135564688 -107099665 - MIR SINE MIR -55 207 16 1620 133 17 87 chr1 135565064 135565364 -107098989 + AluJo SINE Alu 25 303 -9 258 192 0 41 chr1 135565613 135565686 -107098667 - L2 LINE L2 -85 3228 3159 618 14 0 0 chr1 135566086 135566160 -107098193 + tRNA-Gly-GGC tRNA tRNA 1 74 0 286 195 230 9 chr1 135566348 135566461 -107097892 - L1ME4a LINE L1 -33 6088 5951 919 183 13 57 chr1 135566529 135566759 -107097594 + L1MB7 LINE L1 5946 6165 -19 581 28 0 0 chr1 135566914 135566985 -107097368 + tRNA-Gly-GGC tRNA tRNA 1 71 -3 566 300 30 22 chr1 135567687 135567937 -107096416 + MIR SINE MIR 7 256 -6 1187 80 0 0 chr1 135567951 135568088 -107096265 + AluSq/x SINE Alu 1 137 -176 2247 97 17 3 chr1 135568089 135568378 -107095975 + AluSg SINE Alu 1 293 -17 470 237 64 78 chr1 135568387 135568471 -107095882 + L1M4 LINE L1 5087 5171 -975 668 208 0 0 chr1 135568471 135568596 -107095757 + FLAM_A SINE Alu 5 129 -4 470 237 64 78 chr1 135568596 135568730 -107095623 + L1M4 LINE L1 5171 5302 -844 1890 135 16 30 chr1 135568786 135569090 -107095263 + AluJo SINE Alu 1 300 -12 372 323 49 24 chr1 135569105 135569269 -107095084 - MIR SINE MIR -32 230 63 248 243 86 0 chr1 135569376 135569446 -107094907 - L1MC5 LINE L1 -178 7783 7708 2058 233 58 89 chr1 135569981 135570146 -107094207 + L1MC4a LINE L1 6887 7056 -752 2024 126 7 27 chr1 135570146 135570447 -107093906 + AluSx SINE Alu 2 296 -16 2058 233 58 89 chr1 135570447 135571093 -107093260 + L1MC4a LINE L1 7056 7673 -135 326 313 63 8 chr1 135621159 135621307 -107043046 + MIR SINE MIR 29 182 -27 198 287 0 75 chr1 135622647 135622741 -107041612 - MIR SINE MIR -52 210 124 2397 230 86 6 chr1 135622873 135623387 -107040966 - MLT1H1 LTR MaLR 0 555 1 281 247 76 143 chr1 135623413 135623741 -107040612 - MLT1H1-int LTR MaLR -30 1341 1036 410 260 91 37 chr1 135623941 135624237 -107040116 - MLT1H1-int LTR MaLR -928 443 1 2331 221 39 10 chr1 135624237 135624754 -107039599 - MLT1H1 LTR MaLR 0 555 24 4261 262 110 28 chr1 135625876 135627792 -107036561 - L2 LINE L2 0 3313 1234 903 266 69 18 chr1 135628140 135628461 -107035892 - MLT1I LTR MaLR -18 391 67 436 200 0 0 chr1 135630132 135630207 -107034146 + MER116 DNA Mariner 1 75 -5 315 188 14 14 chr1 135631141 135631210 -107033143 - tRNA-Gly-GGG tRNA tRNA -3 71 3 389 153 0 0 chr1 135632042 135632101 -107032252 + tRNA-Gly-GGG tRNA tRNA 1 59 -15 3693 103 92 34 chr1 135632178 135632799 -107031554 - MER51D LTR ERV1 0 657 1 617 229 0 0 chr1 135633392 135633501 -107030852 + FLAM_A SINE Alu 4 112 -30 2347 102 3 0 chr1 135633502 135633805 -107030548 - AluSx SINE Alu -8 304 1 423 369 23 14 chr1 135633991 135634208 -107030145 + MIR SINE MIR 42 260 -2 31 44 0 0 chr1 135634209 135634254 -107030099 + AT_rich Low_complexity Low_complexity 1 45 0 743 222 66 0 chr1 135634282 135634485 -107029868 - L1ME2 LINE L1 -88 6074 5855 1814 167 16 16 chr1 135634553 135634865 -107029488 - AluJb SINE Alu 0 312 1 819 272 76 43 chr1 135635341 135635862 -107028491 - L2 LINE L2 -290 2982 2445 336 289 152 78 chr1 135636760 135637300 -107027053 - L1M2 LINE L1 -5715 1134 555 1938 88 4 8 chr1 135637735 135637997 -107026356 + AluY SINE Alu 33 293 -18 658 153 0 2 chr1 135638323 135638570 -107025783 + AluJb SINE Alu 3 297 -15 233 133 283 17 chr1 135638570 135638630 -107025723 - L1ME3A LINE L1 -57 6113 6038 679 225 140 42 chr1 135638635 135639086 -107025267 - L1ME2 LINE L1 -511 5651 5245 1738 175 3 7 chr1 135639086 135639383 -107024970 - AluJb SINE Alu -16 296 1 679 225 140 42 chr1 135639383 135639472 -107024881 - L1ME2 LINE L1 -912 5250 5079 2209 110 0 19 chr1 135639472 135639782 -107024571 + AluSg SINE Alu 1 304 -6 225 98 0 98 chr1 135639926 135639977 -107024376 + Alu SINE Alu 256 301 0 1824 165 7 10 chr1 135640047 135640356 -107023997 - AluJb SINE Alu -4 308 1 765 199 23 0 chr1 135640356 135640487 -107023866 - AluJo SINE Alu -177 135 2 26 30 0 0 chr1 135640495 135640528 -107023825 + AT_rich Low_complexity Low_complexity 1 33 0 438 330 17 0 chr1 135640619 135640734 -107023619 + L2 LINE L2 3156 3272 0 414 259 36 9 chr1 135640811 135640923 -107023430 + MLT1I LTR MaLR 277 391 -18 1081 130 23 23 chr1 135641142 135641319 -107023034 - AluJo SINE Alu -52 260 84 473 298 43 0 chr1 135641373 135641514 -107022839 + L2 LINE L2 2371 2517 -797 201 250 0 0 chr1 135641870 135641918 -107022435 + L2 LINE L2 3265 3312 -1 185 381 57 0 chr1 135642403 135642508 -107021845 - L2 LINE L2 -5 3308 3198 561 185 0 25 chr1 135642988 135643145 -107021208 + CT-rich Low_complexity Low_complexity 4 156 0 320 258 19 38 chr1 135643274 135643433 -107020920 + L1ME LINE L1 1833 1988 -4408 336 237 59 118 chr1 135643475 135643558 -107020795 + L1ME LINE L1 1998 2084 -4312 2319 96 0 0 chr1 135643558 135643849 -107020504 + AluSx SINE Alu 1 291 -21 336 237 59 118 chr1 135643849 135644028 -107020325 + L1ME LINE L1 2084 2240 -4156 2169 97 40 3 chr1 135644028 135644328 -107020025 + AluY SINE Alu 1 311 0 336 237 59 118 chr1 135644328 135644385 -107019968 + L1ME LINE L1 2240 2299 -4097 2279 62 3 49 chr1 135644387 135644692 -107019661 + AluY SINE Alu 1 291 -20 589 194 17 46 chr1 135644740 135644915 -107019438 + L1ME LINE L1 5330 5499 -734 599 233 89 74 chr1 135644955 135645097 -107019256 + MIR SINE MIR 1 150 -112 339 25 0 0 chr1 135645097 135645137 -107019216 + (TTAAA)n Simple_repeat Simple_repeat 3 42 0 599 233 89 74 chr1 135645137 135645252 -107019101 + MIR SINE MIR 150 262 0 2012 132 4 0 chr1 135645304 135645676 -107018677 + AluSx SINE Alu 1 373 0 2419 189 46 52 chr1 135645799 135646519 -107017834 + L1M4c LINE L1 2344 3049 -3333 1579 162 60 126 chr1 135646606 135647026 -107017327 - MSTD LTR MaLR 0 396 5 523 83 69 0 chr1 135647323 135647395 -107016958 + L1PA11 LINE L1 6098 6174 0 517 265 53 106 chr1 135647679 135648056 -107016297 - MLT1J LTR MaLR -149 362 6 243 333 111 0 chr1 135648129 135648219 -107016134 + MER5B DNA MER1_type 39 138 -40 22 94 0 0 chr1 135648464 135648528 -107015825 + AT_rich Low_complexity Low_complexity 1 64 0 361 242 87 27 chr1 135648722 135648871 -107015482 - L1ME4a LINE L1 0 6121 5964 1157 189 0 0 chr1 135648960 135649151 -107015202 + AluSx SINE Alu 5 195 -117 2395 87 3 0 chr1 135649666 135649976 -107014377 - AluSp SINE Alu -2 311 1 439 245 254 16 chr1 135650131 135650322 -107014031 - MIR SINE MIR -8 254 23 24 0 0 0 chr1 135650425 135650449 -107013904 + AT_rich Low_complexity Low_complexity 1 24 0 243 305 61 12 chr1 135650468 135650632 -107013721 - L1M4 LINE L1 -960 5186 5015 465 293 61 77 chr1 135650761 135651252 -107013101 - L1M4 LINE L1 -1315 4831 4349 2024 186 36 75 chr1 135651734 135652267 -107012086 + LTR40a LTR ERVL 1 512 -7 1769 174 3 20 chr1 135652268 135652566 -107011787 - AluJo SINE Alu -19 293 1 307 342 62 0 chr1 135652590 135652751 -107011602 - L1M4 LINE L1 -2385 3761 3591 1811 148 3 48 chr1 135652795 135653105 -107011248 + AluSx SINE Alu 1 296 -16 186 118 0 0 chr1 135653351 135653385 -107010968 + (TC)n Simple_repeat Simple_repeat 2 35 0 455 298 108 45 chr1 135653417 135653769 -107010584 - L1M4 LINE L1 -2968 3178 2805 22 0 0 0 chr1 135653814 135653836 -107010517 + AT_rich Low_complexity Low_complexity 1 22 0 22728 22 1 0 chr1 135654069 135657366 -107006987 + L1PA2 LINE L1 2751 6050 -105 466 329 76 14 chr1 135658277 135658554 -107005799 + LTR16C LTR ERVL 186 479 -12 2347 100 0 3 chr1 135659829 135660138 -107004215 - AluSg SINE Alu -2 308 1 2482 39 0 3 chr1 135660151 135660461 -107003892 - AluY SINE Alu 0 309 1 2084 137 0 13 chr1 135660598 135660911 -107003442 + AluSx SINE Alu 3 311 -1 439 326 6 23 chr1 135661202 135661377 -107002976 - L1ME LINE L1 -411 5751 5580 362 250 65 0 chr1 135661383 135661491 -107002862 - L1ME LINE L1 -638 5528 5414 * 2081 260 138 36 chr1 135661486 135662523 -107001830 - L1ME LINE L1 -2366 3780 2558 1977 128 17 10 chr1 135662523 135662812 -107001541 - AluSx SINE Alu -21 291 1 2081 260 138 36 chr1 135662812 135663194 -107001159 - L1ME LINE L1 -3588 2558 2216 34 93 0 0 chr1 135663416 135663513 -107000840 + AT_rich Low_complexity Low_complexity 1 97 0 7362 104 8 7 chr1 135663515 135664685 -106999668 - L1MA1 LINE L1 -4 6298 5127 390 235 75 75 chr1 135665021 135665208 -106999145 - MIR3 SINE MIR -6 202 16 256 99 84 56 chr1 135665472 135665543 -106998810 - L1M2c LINE L1 -4548 2241 2169 587 210 63 0 chr1 135665908 135666051 -106998302 + MER3 DNA MER1_type 25 129 -80 315 282 101 68 chr1 135666249 135666497 -106997856 + MIR SINE MIR 7 262 0 475 255 40 60 chr1 135666931 135667131 -106997222 - L2 LINE L2 0 3313 3118 303 350 7 7 chr1 135667136 135667273 -106997080 - L2 LINE L2 -1028 2286 2150 243 0 0 0 chr1 135667307 135667334 -106997019 + (GA)n Simple_repeat Simple_repeat 2 28 0 369 303 122 23 chr1 135667457 135667678 -106996675 + HAL1 LINE L1 843 1085 -1422 2935 171 36 64 chr1 135667797 135668511 -106995842 + L1MB8 LINE L1 5484 6177 -1 813 285 98 28 chr1 135668507 135668966 -106995387 + HAL1 LINE L1 1170 1660 -847 * 930 171 5 4 chr1 135668979 135669189 -106995164 + AluJb SINE Alu 1 301 -11 888 111 0 3 chr1 135669278 135669505 -106994848 + AluSx SINE Alu 1 292 -18 661 321 15 11 chr1 135669972 135670246 -106994107 + L1MEc LINE L1 834 1108 -6030 663 221 52 39 chr1 135670735 135670966 -106993387 + L1MEc LINE L1 1327 1641 -5306 14496 121 26 12 chr1 135671030 135673179 -106991174 - Tigger1 DNA MER2_type 0 2418 235 2217 128 50 8 chr1 135673179 135673539 -106990814 - THE1C LTR MaLR 0 375 1 14496 121 26 12 chr1 135673539 135673592 -106990761 - Tigger1 DNA MER2_type -2183 235 184 731 206 0 0 chr1 135673598 135673724 -106990629 + FLAM_C SINE Alu 6 131 -12 984 185 26 16 chr1 135673724 135673913 -106990440 - Tigger1 DNA MER2_type -2227 191 1 680 239 65 75 chr1 135673913 135674346 -106990007 + L1MEc LINE L1 1832 2444 -4694 191 240 321 36 chr1 135674566 135674899 -106989454 - L2 LINE L2 -338 2976 2549 245 310 113 52 chr1 135674903 135675116 -106989237 - L3 LINE CR1 -899 678 453 185 270 0 63 chr1 135676359 135676422 -106987931 - L3 LINE CR1 -2 1575 1517 2209 131 20 0 chr1 135676534 135676840 -106987513 - AluSx SINE Alu 0 312 1 590 309 40 16 chr1 135676940 135677189 -106987164 + MIR SINE MIR 8 262 0 677 277 40 5 chr1 135677496 135677698 -106986655 - MIR SINE MIR -6 256 48 935 190 15 15 chr1 135677700 135677895 -106986458 - MER3 DNA MER1_type 0 209 15 229 279 29 0 chr1 135677922 135677990 -106986363 - MER5A DNA MER1_type -51 138 69 191 306 57 48 chr1 135678007 135678131 -106986222 + MIR3 SINE MIR 5 129 -79 2308 99 3 0 chr1 135678670 135678964 -106985389 - AluSx SINE Alu -17 295 1 1630 275 124 14 chr1 135679403 135680396 -106983957 - L2 LINE L2 -1 3312 2220 934 130 0 0 chr1 135680426 135680549 -106983804 - FLAM_C SINE Alu -20 123 1 730 263 23 23 chr1 135680564 135680677 -106983676 - L2 LINE L2 -1104 2210 2098 2119 148 3 0 chr1 135680677 135680988 -106983365 + AluSx SINE Alu 1 312 0 730 263 23 23 chr1 135680988 135681140 -106983213 - L2 LINE L2 -1215 2099 1945 1064 171 81 53 chr1 135681154 135681400 -106982953 + L1MD2 LINE L1 4771 5023 -1123 * 2107 199 31 4 chr1 135681396 135681902 -106982451 + L1MD2 LINE L1 5254 5962 -397 387 303 84 17 chr1 135682062 135682240 -106982113 - L2 LINE L2 -209 3063 2874 219 232 174 0 chr1 135682828 135682897 -106981456 - MIR SINE MIR -165 97 17 201 309 107 0 chr1 135683695 135683779 -106980574 + MIR SINE MIR 31 123 -85 356 156 0 0 chr1 135684002 135684069 -106980284 + Alu SINE Alu 2 53 -247 222 229 66 16 chr1 135684699 135684760 -106979593 + MIR3 SINE MIR 138 201 -7 1272 161 26 130 chr1 135685719 135686141 -106978212 + L1ME2 LINE L1 5524 5901 -263 606 249 32 113 chr1 135686184 135686529 -106977824 + MLT1E2-int LTR MaLR 957 1273 -98 771 270 137 29 chr1 135686762 135687218 -106977135 + MLT1E2 LTR MaLR 111 654 0 6795 109 6 25 chr1 135687459 135688447 -106975906 - LTR5 LTR ERVK 0 969 1 1848 160 7 3 chr1 135688458 135688758 -106975595 + AluSq SINE Alu 9 309 -4 326 265 49 37 chr1 135689085 135689247 -106975106 + L1MB8 LINE L1 5990 6153 -25 917 281 86 16 chr1 135689255 135689640 -106974713 + L1ME2 LINE L1 19 430 -5996 1966 211 47 19 chr1 135689640 135690877 -106973476 + L1MC2 LINE L1 4712 6074 -270 3141 89 14 18 chr1 135691026 135691464 -106972889 - PABL_A LTR ERV1 -223 437 2 802 284 113 30 chr1 135691466 135691892 -106972461 + L1ME2 LINE L1 5691 6151 -13 985 281 107 8 chr1 135691917 135692401 -106971952 + L1ME2 LINE L1 4609 5140 -1286 606 191 22 11 chr1 135693227 135693405 -106970948 + (TA)n Simple_repeat Simple_repeat 1 180 0 1495 90 19 19 chr1 135693410 135693622 -106970731 - L1PA6 LINE L1 -34 6120 5909 886 273 128 33 chr1 135693651 135694583 -106969770 + L1ME2 LINE L1 5142 6172 -272 2502 45 3 45 chr1 135694583 135694896 -106969457 + AluY SINE Alu 1 300 -11 886 273 128 33 chr1 135694896 135694931 -106969422 + L1ME2 LINE L1 6172 6202 -242 1683 172 10 0 chr1 135696254 135696550 -106967803 + AluSg SINE Alu 1 299 -11 932 240 5 5 chr1 135697746 135697950 -106966403 + AluJb SINE Alu 1 204 -108 2259 97 0 31 chr1 135698029 135698350 -106966003 + AluY SINE Alu 1 311 0 1875 147 6 6 chr1 135698364 135698676 -106965677 + AluSx SINE Alu 1 312 0 1849 158 13 0 chr1 135699754 135700058 -106964295 + AluSg SINE Alu 1 308 -2 386 286 7 14 chr1 135700220 135700367 -106963986 + MIR SINE MIR 96 241 -21 379 253 0 0 chr1 135701313 135701408 -106962945 - L1MB5 LINE L1 -9 6165 6071 216 286 11 22 chr1 135702284 135702375 -106961978 + MIR SINE MIR 152 241 -21 360 211 42 42 chr1 135703375 135703470 -106960883 - L1MB5 LINE L1 -9 6165 6071 1777 164 0 0 chr1 135706565 135706834 -106957519 - AluSx SINE Alu -6 306 38 10493 66 6 0 chr1 135707552 135708940 -106955413 - L1P LINE L1 -2920 3226 1831 4610 96 8 5 chr1 135708939 135709598 -106954755 + L1PA4 LINE L1 5494 6154 -1 258 32 0 0 chr1 135709598 135709629 -106954724 + (TA)n Simple_repeat Simple_repeat 2 32 0 6305 107 4 34 chr1 135709672 135710670 -106953683 - L1P LINE L1 -4304 1842 875 387 0 0 0 chr1 135712887 135712930 -106951423 + (TG)n Simple_repeat Simple_repeat 2 44 0 193 128 43 0 chr1 135714433 135714480 -106949873 + CT-rich Low_complexity Low_complexity 1 49 0 231 36 0 0 chr1 135715979 135716007 -106948346 + (TC)n Simple_repeat Simple_repeat 1 28 0 387 83 0 0 chr1 135716008 135716068 -106948285 + (TG)n Simple_repeat Simple_repeat 2 61 0 287 150 38 12 chr1 135717152 135717232 -106947121 + GA-rich Low_complexity Low_complexity 2 83 0 399 68 0 0 chr1 135717638 135717697 -106946656 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 233 352 11 34 chr1 135718851 135719027 -106945326 + L1MC4 LINE L1 7460 7631 -411 570 310 51 40 chr1 135719028 135719476 -106944877 - L1MC4 LINE L1 -401 7641 7189 288 70 0 0 chr1 135719838 135719881 -106944472 + (TG)n Simple_repeat Simple_repeat 1 43 0 236 268 31 31 chr1 135720978 135721075 -106943278 - L1MC5 LINE L1 -50 7911 7815 243 188 72 0 chr1 135721134 135721203 -106943150 - MLT2D LTR ERVL -75 440 367 604 281 21 10 chr1 135721228 135721420 -106942933 - MLT2D LTR ERVL -220 194 1 990 249 37 42 chr1 135721420 135721821 -106942532 - L1M4 LINE L1 -889 5257 4859 1650 146 0 26 chr1 135722121 135722388 -106941965 + AluSq SINE Alu 50 309 -4 335 238 210 47 chr1 135722388 135722707 -106941646 + L1MEc LINE L1 983 1353 -5210 362 290 89 26 chr1 135722749 135723149 -106941204 + L1MEc LINE L1 1265 1658 -4726 * 1073 233 86 88 chr1 135723141 135723243 -106941110 + L1M4 LINE L1 4190 4291 -1855 297 51 0 0 chr1 135723243 135723282 -106941071 + (CA)n Simple_repeat Simple_repeat 1 39 0 1073 233 86 88 chr1 135723282 135723694 -106940659 + L1M4 LINE L1 4291 4703 -1443 1256 221 11 4 chr1 135723770 135724051 -106940302 - AluJo SINE Alu -9 303 21 2352 74 0 24 chr1 135724204 135724502 -106939851 + AluY SINE Alu 1 291 -20 191 88 29 0 chr1 135724530 135724564 -106939789 + (TA)n Simple_repeat Simple_repeat 1 35 0 234 222 0 0 chr1 135724568 135724631 -106939722 - L1MA9 LINE L1 -36 6276 6214 242 227 143 25 chr1 135725550 135725669 -106938684 + MIR SINE MIR 104 236 -26 246 370 37 5 chr1 135725769 135725958 -106938395 - L1MC/D LINE L1 -2040 5768 5574 245 257 228 0 chr1 135726335 135726537 -106937816 - HAL1 LINE L1 -155 2352 2105 220 271 0 29 chr1 135727779 135727849 -106936504 + CT-rich Low_complexity Low_complexity 2 69 0 492 125 0 0 chr1 135728761 135728833 -106935520 - tRNA-Gln-CAG tRNA tRNA -3 72 1 2066 164 44 3 chr1 135729623 135729989 -106934364 - LOR1b LTR ERV1 -2 459 79 497 132 13 0 chr1 135729990 135730066 -106934287 + AluJb SINE Alu 57 133 -179 26440 105 14 14 chr1 135730083 135734021 -106930332 + L1P LINE L1 11 3946 -2200 1166 166 31 106 chr1 135734123 135734443 -106929910 + LTR5 LTR ERVK 674 969 0 1295 116 20 30 chr1 135734443 135734642 -106929711 + MER4B LTR ERV1 408 604 -6 1146 289 68 38 chr1 135734653 135735504 -106928849 + L1M4 LINE L1 4018 4894 -1252 385 146 0 85 chr1 135735721 135735803 -106928550 + AluJ/FRAM SINE Alu 227 301 -1 437 285 70 49 chr1 135735888 135735950 -106928403 + L1M4 LINE L1 3374 3433 -2713 2103 95 4 0 chr1 135735950 135736213 -106928140 + AluSp SINE Alu 35 298 -15 437 285 70 49 chr1 135736213 135736494 -106927859 + L1M4 LINE L1 3433 3724 -2422 2113 120 7 0 chr1 135736548 135736839 -106927514 + AluSx SINE Alu 1 293 -19 1350 227 46 96 chr1 135736844 135737123 -106927230 + L1M4 LINE L1 4272 4563 -1583 2081 194 37 77 chr1 135737123 135737293 -106927060 + MLT1F LTR MaLR 3 178 -364 2230 117 0 0 chr1 135737293 135737591 -106926762 - AluSg SINE Alu -12 298 1 2081 194 37 77 chr1 135737591 135737982 -106926371 + MLT1F LTR MaLR 178 542 0 1350 227 46 96 chr1 135737982 135738439 -106925914 + L1M4 LINE L1 4563 4971 -1175 234 264 55 11 chr1 135739368 135739459 -106924894 + L1M4 LINE L1 2117 2211 -3935 287 150 38 12 chr1 135740364 135740444 -106923909 + GA-rich Low_complexity Low_complexity 2 83 0 378 85 0 0 chr1 135740850 135740909 -106923444 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 221 146 21 0 chr1 135742405 135742453 -106921900 + CT-rich Low_complexity Low_complexity 1 49 0 221 146 21 0 chr1 135743945 135743993 -106920360 + CT-rich Low_complexity Low_complexity 1 49 0 12468 53 9 0 chr1 135744222 135746555 -106917798 + L1PA5 LINE L1 3811 6147 -7 24059 71 3 2 chr1 135746581 135750529 -106913824 + L1PA6 LINE L1 2202 6151 -3 3577 262 67 33 chr1 135750528 135751944 -106912409 - L1M1 LINE L1 -4984 2581 18 * 21 0 0 0 chr1 135752048 135752069 -106912284 + AT_rich Low_complexity Low_complexity 1 21 0 353 266 92 40 chr1 135752152 135752325 -106912028 + MER5A DNA MER1_type 7 188 -1 343 265 23 15 chr1 135754043 135754175 -106910178 - MIR3 SINE MIR -32 176 44 345 271 71 29 chr1 135759012 135759152 -106905201 + MIR SINE MIR 100 245 -17 2256 59 4 4 chr1 135759210 135759480 -106904873 + AluY SINE Alu 2 271 -40 2280 100 3 0 chr1 135759631 135759932 -106904421 - AluSx SINE Alu -10 302 1 377 269 37 28 chr1 135760724 135760832 -106903521 + MIR3 SINE MIR 83 191 -17 4512 154 45 36 chr1 135761567 135762460 -106901893 + L1MA7 LINE L1 5389 6289 -2 726 198 0 8 chr1 135762536 135762657 -106901696 - FLAM_A SINE Alu -13 129 10 1028 206 9 37 chr1 135765879 135766093 -106898260 + MER3 DNA MER1_type 1 208 -1 221 389 14 14 chr1 135766305 135766444 -106897909 - MIR3 SINE MIR -37 171 33 646 305 93 0 chr1 135768211 135768437 -106895916 + MIR SINE MIR 3 249 -13 789 179 8 15 chr1 135768839 135768973 -106895380 - FLAM_A SINE Alu 0 133 1 22 35 0 0 chr1 135770257 135770286 -106894067 + AT_rich Low_complexity Low_complexity 1 29 0 689 106 0 0 chr1 135770560 135770673 -106893680 - AluSp/q SINE Alu 0 310 198 189 0 0 0 chr1 135776053 135776074 -106888279 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1556 100 0 0 chr1 135776301 135776501 -106887852 - AluSg/x SINE Alu -6 304 105 412 299 66 0 chr1 135776557 135776694 -106887659 - MIR SINE MIR -6 256 111 359 197 0 0 chr1 135777324 135777390 -106886963 - L2 LINE L2 -1 3312 3247 1063 141 0 0 chr1 135777957 135778106 -106886247 + FRAM SINE Alu 1 148 -28 787 178 0 31 chr1 135778107 135778236 -106886117 + AluSq/x SINE Alu 9 133 -180 791 165 43 37 chr1 135779049 135779237 -106885116 + L1MC5 LINE L1 7114 7302 -659 2308 89 7 0 chr1 135779328 135779619 -106884734 + AluSg SINE Alu 1 293 -17 220 271 118 0 chr1 135779624 135779709 -106884644 - MIR SINE MIR -1 261 167 1002 297 124 4 chr1 135779710 135780161 -106884192 + L2 LINE L2 2809 3313 0 425 209 70 149 chr1 135780158 135780359 -106883994 - MIR SINE MIR -77 185 1 * 329 330 73 39 chr1 135781170 135781376 -106882977 + MIR SINE MIR 46 258 -4 207 0 0 0 chr1 135781481 135781504 -106882849 + (TTA)n Simple_repeat Simple_repeat 3 25 0 2266 99 0 0 chr1 135781508 135781791 -106882562 - AluSq SINE Alu -30 283 1 2832 250 79 66 chr1 135782254 135783654 -106880699 + L1MC4a LINE L1 5673 7094 -714 2169 97 50 3 chr1 135783654 135783952 -106880401 - AluSx SINE Alu 0 312 1 2832 250 79 66 chr1 135783952 135783965 -106880388 + L1MC4a LINE L1 7094 7105 -703 442 210 42 34 chr1 135784001 135784121 -106880232 + L1MC4 LINE L1 7212 7412 -477 1377 143 0 14 chr1 135784154 135784370 -106879983 + AluJb SINE Alu 1 213 -99 600 73 0 0 chr1 135784387 135784469 -106879884 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 476 156 138 9 chr1 135784469 135784578 -106879775 + L1MC4 LINE L1 7448 7570 -472 210 294 0 34 chr1 135784605 135784724 -106879629 + G-rich Low_complexity Low_complexity 4 118 0 28 0 0 0 chr1 135787785 135787813 -106876540 + AT_rich Low_complexity Low_complexity 1 28 0 1603 239 42 31 chr1 135788180 135788658 -106875695 + L1MC4 LINE L1 7560 8042 0 799 136 0 0 chr1 135790034 135790144 -106874209 + FLAM_C SINE Alu 2 111 -32 180 0 0 0 chr1 135790150 135790170 -106874183 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 257 324 63 9 chr1 135790608 135790719 -106873634 + L2 LINE L2 3152 3268 -4 789 251 68 21 chr1 135790976 135791211 -106873142 + MIR SINE MIR 16 261 -1 865 102 0 0 chr1 135791355 135791473 -106872880 + AluSp/q SINE Alu 190 307 -6 435 265 154 52 chr1 135791473 135792246 -106872107 + L1MEc LINE L1 816 1667 -4729 * 1169 245 104 44 chr1 135792228 135792308 -106872045 + L1M4 LINE L1 4178 4252 -1894 467 82 14 0 chr1 135792308 135792381 -106871972 + (CA)n Simple_repeat Simple_repeat 2 75 0 1169 245 104 44 chr1 135792381 135792799 -106871554 + L1M4 LINE L1 4252 4705 -1441 1278 227 7 3 chr1 135792868 135793154 -106871199 - AluJo SINE Alu -12 300 14 578 49 25 0 chr1 135793260 135793341 -106871012 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 6743 104 18 61 chr1 135793356 135794057 -106870296 - LOR1-int LTR ERV1 -4058 4062 3424 1814 168 0 20 chr1 135794057 135794361 -106869992 - AluSx SINE Alu -14 298 1 6743 104 18 61 chr1 135794361 135794761 -106869592 - LOR1-int LTR ERV1 -4696 3424 3008 290 370 75 41 chr1 135794963 135795109 -106869244 - L1MCc LINE L1 -5826 597 447 706 48 19 10 chr1 135795127 135795230 -106869123 + (TCTCCC)n Simple_repeat Simple_repeat 4 107 0 9692 59 5 105 chr1 135795234 135796710 -106867643 + SVA Other Other 58 1386 0 239 0 0 31 chr1 135796782 135796814 -106867539 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 220 185 15 15 chr1 135796845 135796910 -106867443 + CT-rich Low_complexity Low_complexity 2 66 0 201 108 0 0 chr1 135796919 135796956 -106867397 + (A)n Simple_repeat Simple_repeat 1 37 0 1025 308 42 7 chr1 135796995 135797401 -106866952 - L1MCc LINE L1 -5985 438 19 815 104 0 0 chr1 135797621 135797727 -106866626 - AluY SINE Alu -11 300 195 44364 46 2 3 chr1 135797832 135803985 -106860368 + L1PA4 LINE L1 7 6152 -3 1328 196 57 94 chr1 135804540 135804944 -106859409 - MLT1B LTR MaLR -1 389 1 439 245 43 14 chr1 135805340 135805479 -106858874 - L2 LINE L2 -820 2494 2352 825 178 28 39 chr1 135805930 135806110 -106858243 + MER58 DNA MER1_type 2243 2420 0 695 0 0 0 chr1 135807147 135807219 -106857134 + tRNA-His-CAC tRNA tRNA 1 72 -3 219 258 30 0 chr1 135807486 135807552 -106856801 + CT-rich Low_complexity Low_complexity 2 69 0 2170 235 52 52 chr1 135807848 135808950 -106855403 - L1ME2 LINE L1 -182 5982 4873 879 185 161 4 chr1 135808964 135809195 -106855158 + AluJb SINE Alu 1 213 -99 297 307 25 12 chr1 135809197 135809360 -106854993 - L1ME2 LINE L1 -1286 4860 4696 402 271 28 28 chr1 135809420 135809564 -106854789 - HAL1 LINE L1 -1948 559 416 1492 176 33 61 chr1 135809748 135810111 -106854242 + MLT1A1 LTR MaLR 13 365 0 291 248 98 68 chr1 135811699 135811832 -106852521 + MER20 DNA MER1_type 81 217 -2 473 153 0 0 chr1 135812552 135812624 -106851729 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 406 256 0 18 chr1 135813673 135813837 -106850516 + U1 snRNA snRNA 4 164 -1 820 233 38 98 chr1 135815286 135815701 -106848652 + MER39 LTR ERV1 56 636 -67 242 191 16 16 chr1 135815703 135815766 -106848587 + (TA)n Simple_repeat Simple_repeat 1 63 0 280 263 105 0 chr1 135815766 135815880 -106848473 - HAL1b LINE L1 -191 1157 1032 231 222 0 0 chr1 135816879 135816933 -106847420 + T-rich Low_complexity Low_complexity 1 54 0 623 249 63 51 chr1 135817665 135817902 -106846451 - L1ME2 LINE L1 -124 6040 5801 258 200 124 29 chr1 135817912 135818017 -106846336 - REP3 LTR ERV -442 120 6 725 161 183 0 chr1 135818540 135818677 -106845676 - U1 snRNA snRNA -3 162 1 2071 99 55 0 chr1 135819079 135819372 -106844981 - AluSx SINE Alu -3 309 1 422 279 25 0 chr1 135819378 135819500 -106844853 - Charlie4 DNA MER1_type -3 1958 1834 1840 134 40 17 chr1 135820038 135820336 -106844017 - LTR8 LTR ERV1 0 691 387 1291 65 0 40 chr1 135820337 135820537 -106843816 - L1P5 LINE L1 -695 5456 5265 * 2517 220 3 27 chr1 135820536 135821164 -106843189 + L1P5 LINE L1 4640 5252 -894 1400 207 56 0 chr1 135821274 135821559 -106842794 - AluJo SINE Alu -11 301 1 2703 248 41 21 chr1 135821565 135822666 -106841687 + L1MEc LINE L1 1991 3078 -3137 613 162 0 0 chr1 135822666 135822777 -106841576 + L1PB1 LINE L1 6038 6148 -3 2703 248 41 21 chr1 135822777 135822933 -106841420 + L1MEc LINE L1 3078 3229 -2986 293 160 60 0 chr1 135823001 135823051 -106841302 + tRNA-Asn-AAC tRNA tRNA 21 73 -4 2526 219 39 11 chr1 135823558 135824196 -106840157 - L1ME1 LINE L1 -99 6067 5412 2962 94 4 46 chr1 135824196 135824393 -106839960 + L1PB1 LINE L1 5419 5623 -528 2434 78 3 3 chr1 135824393 135824701 -106839652 - AluY SINE Alu -3 308 1 2962 94 4 46 chr1 135824701 135824893 -106839460 + L1PB1 LINE L1 5623 5789 -362 387 0 0 0 chr1 135824893 135824936 -106839417 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2962 94 4 46 chr1 135824936 135825004 -106839349 + L1PB1 LINE L1 5789 5858 -293 1508 138 26 155 chr1 135825473 135826047 -106838306 - MER4A LTR ERV1 0 465 102 703 145 24 8 chr1 135826066 135826190 -106838163 - MER4A LTR ERV1 -538 126 1 2035 130 7 0 chr1 135826192 135826485 -106837868 - AluSx SINE Alu -17 295 1 2411 158 13 16 chr1 135826489 135827139 -106837214 + L1M2 LINE L1 5000 5646 -666 501 295 75 36 chr1 135827239 135827598 -106836755 - L1MC4 LINE L1 -481 7561 7189 5095 62 0 0 chr1 135827604 135828215 -106836138 + LTR13 LTR ERVK 2 612 -395 1477 136 4 17 chr1 135828215 135828474 -106835879 - L1P4 LINE L1 -463 5688 5453 341 214 24 0 chr1 135828442 135828526 -106835827 - L1ME1 LINE L1 -1200 4946 4861 * 349 255 72 0 chr1 135828794 135828949 -106835404 + L1MEc LINE L1 792 914 -5291 641 312 69 23 chr1 135829030 135829553 -106834800 + L1MEc LINE L1 1090 1485 -4732 2138 131 0 0 chr1 135829557 135829855 -106834498 + AluSg SINE Alu 1 298 -12 1168 261 68 10 chr1 135829874 135829939 -106834414 + L1 LINE L1 4185 4245 -1901 444 19 0 0 chr1 135829939 135829992 -106834361 + (CA)n Simple_repeat Simple_repeat 2 54 0 1168 261 68 10 chr1 135829992 135830413 -106833940 + L1 LINE L1 4245 4699 -1447 1721 174 0 28 chr1 135830442 135830759 -106833594 - AluSx SINE Alu -4 308 1 1113 187 31 0 chr1 135830893 135831118 -106833235 - L1MA9 LINE L1 -32 6280 6049 587 171 185 0 chr1 135831118 135831264 -106833089 - LTR36 LTR ERV1 0 611 439 2348 104 3 0 chr1 135832642 135832950 -106831403 + AluY SINE Alu 1 309 -2 22 0 0 0 chr1 135832951 135832973 -106831380 + AT_rich Low_complexity Low_complexity 1 22 0 207 261 9 36 chr1 135834047 135834158 -106830195 + (TA)n Simple_repeat Simple_repeat 2 109 0 7155 60 29 0 chr1 135835189 135836061 -106828292 + MER11D LTR ERVK 1 897 0 222 356 34 48 chr1 135836193 135836339 -106828014 - MIR SINE MIR -105 157 14 1907 138 3 72 chr1 135837158 135837519 -106826834 - MER1B DNA MER1_type -1 336 1 332 283 53 31 chr1 135837672 135837898 -106826455 - MER46C DNA MER2_type -8 330 100 5767 146 24 17 chr1 135838070 135839032 -106825321 - LTR5 LTR ERVK 0 969 1 276 222 12 25 chr1 135840321 135840402 -106823951 + L1MC4 LINE L1 7956 8035 -7 188 283 0 0 chr1 135840532 135840592 -106823761 + MIR SINE MIR 88 147 -115 333 131 0 0 chr1 135844190 135844251 -106820102 + (GA)n Simple_repeat Simple_repeat 1 61 0 201 227 0 0 chr1 135845741 135845785 -106818568 + GA-rich Low_complexity Low_complexity 1 44 0 1850 129 0 4 chr1 135848691 135848947 -106815406 + AluSx SINE Alu 34 288 -24 2209 118 0 0 chr1 135850413 135850702 -106813651 - AluSx SINE Alu -23 289 1 442 228 0 0 chr1 135852847 135852939 -106811414 + L1MB5 LINE L1 6074 6165 -9 608 78 89 0 chr1 135853653 135853743 -106810610 + MER4A LTR ERV1 1 98 -566 1608 129 8 114 chr1 135853743 135854127 -106810226 + MER4A LTR ERV1 263 664 0 2762 104 67 25 chr1 135854130 135854635 -106809718 + MER4A-int LTR ERV1 1 569 -6029 1191 124 180 0 chr1 135854644 135854838 -106809515 + MER4A LTR ERV1 436 664 0 500 274 7 7 chr1 135855016 135855162 -106809191 - MIR SINE MIR -21 241 96 2391 97 0 13 chr1 135855263 135855571 -106808782 + AluSp SINE Alu 1 304 -9 19241 29 0 0 chr1 135856917 135859942 -106804411 - L1PA3 LINE L1 0 6155 3126 2229 97 7 13 chr1 135861042 135861340 -106803013 + AluSp SINE Alu 1 296 -17 207 326 83 23 chr1 135861496 135861628 -106802725 - MIR SINE MIR -13 249 110 182 297 138 28 chr1 135862899 135863044 -106801309 - MER5A DNA MER1_type -28 161 1 354 289 31 0 chr1 135863061 135863158 -106801195 - MIR SINE MIR -109 153 54 1581 198 7 21 chr1 135863364 135863652 -106800701 - AluJo SINE Alu -28 284 1 3500 215 36 10 chr1 135863749 135864834 -106799519 - L1MB7 LINE L1 -27 6157 5041 235 318 50 18 chr1 135865497 135865620 -106798733 - MIR SINE MIR -38 170 31 24 85 0 0 chr1 135865722 135865781 -106798572 + AT_rich Low_complexity Low_complexity 1 59 0 1107 281 74 39 chr1 135865919 135866121 -106798232 - L1ME3 LINE L1 -1 6161 5967 2675 158 2 5 chr1 135866121 135866551 -106797802 - MSTB1 LTR MaLR 0 432 4 1107 281 74 39 chr1 135866551 135866766 -106797587 - L1ME3 LINE L1 -195 5967 5761 2521 74 0 0 chr1 135866766 135867075 -106797278 - AluSg SINE Alu -1 309 1 1107 281 74 39 chr1 135867075 135867538 -106796815 - L1ME3 LINE L1 -401 5761 5315 291 114 0 0 chr1 135867538 135867582 -106796771 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 1107 281 74 39 chr1 135867582 135868422 -106795931 - L1ME3 LINE L1 -847 5315 4338 1399 253 88 24 chr1 135868449 135869324 -106795029 - L1ME1 LINE L1 -5 6161 5189 2252 260 23 37 chr1 135869423 135870433 -106793920 - L1MB7 LINE L1 -1303 4843 3848 1536 171 44 54 chr1 135870535 135870850 -106793503 + AluJb SINE Alu 1 312 0 1604 259 75 29 chr1 135870878 135871685 -106792668 - L1ME1 LINE L1 -136 6030 5184 2285 110 0 3 chr1 135871685 135871994 -106792359 - AluSx SINE Alu -4 308 1 1604 259 75 29 chr1 135871994 135872062 -106792291 - L1ME1 LINE L1 -982 5184 5121 * 2804 206 27 11 chr1 135872056 135872751 -106791602 - L1P LINE L1 -2063 4083 3378 260 247 45 19 chr1 135872757 135872911 -106791442 - L1MB7 LINE L1 -2953 3193 3036 1776 232 11 2 chr1 135872982 135873418 -106790935 + L1P LINE L1 4084 4523 -1623 468 90 0 0 chr1 135873410 135873477 -106790876 + L1PA16 LINE L1 5864 5930 -236 * 9606 204 39 15 chr1 135873474 135876088 -106788265 - L1M2 LINE L1 -611 5701 3014 1844 168 0 7 chr1 135876088 135876404 -106787949 - AluSx SINE Alu 0 314 1 9606 204 39 15 chr1 135876404 135876673 -106787680 - L1M2 LINE L1 -3298 3014 2753 1229 221 108 57 chr1 135876671 135876693 -106787660 - L1ME1 LINE L1 -1139 5007 4988 * 1682 152 35 0 chr1 135876693 135877009 -106787344 - L1MA4 LINE L1 -4 6296 5970 1229 221 108 57 chr1 135877009 135877665 -106786688 - L1ME1 LINE L1 -1158 4988 4295 683 200 0 0 chr1 135878830 135878945 -106785408 + FLAM_C SINE Alu 1 115 -18 2642 87 41 8 chr1 135879678 135880069 -106784284 + MLT2A1 LTR ERVL 1 404 -40 291 114 0 0 chr1 135880080 135880124 -106784229 + (TA)n Simple_repeat Simple_repeat 1 44 0 347 71 0 18 chr1 135880124 135880180 -106784173 + MLT2A1 LTR ERVL 399 453 0 4352 77 3 0 chr1 135880180 135880775 -106783578 + HERVL-A1 LTR ERVL 1 597 -5057 205 321 25 49 chr1 135881022 135881103 -106783250 - L2 LINE L2 -6 3307 3229 1936 212 38 11 chr1 135881435 135881964 -106782389 + L1M4 LINE L1 4163 4705 -1441 845 177 0 0 chr1 135881964 135882088 -106782265 + FLAM_C SINE Alu 1 124 -19 1372 179 19 0 chr1 135882094 135882357 -106781996 + L1M4 LINE L1 4696 4963 -1183 786 184 45 14 chr1 135882354 135882571 -106781782 - L1MDa LINE L1 -6198 342 18 * 1565 174 34 20 chr1 135882583 135882876 -106781477 - AluJo SINE Alu -15 297 1 742 261 55 15 chr1 135882891 135883293 -106781060 - L1MCa LINE L1 -4751 1675 1258 1225 189 45 65 chr1 135883296 135883650 -106780703 - MLT1A1 LTR MaLR 0 365 19 1179 208 80 51 chr1 135883662 135884234 -106780119 - L1MCa LINE L1 -5159 1448 860 893 191 142 81 chr1 135884240 135884346 -106780007 - MLT1D LTR MaLR 0 505 407 2198 51 18 0 chr1 135884346 135884621 -106779732 + L1PA3 LINE L1 5873 6152 -3 893 191 142 81 chr1 135884621 135884923 -106779430 - MLT1D LTR MaLR -98 407 72 263 221 132 0 chr1 135884926 135884994 -106779359 - L1MCa LINE L1 -6183 424 348 506 291 34 23 chr1 135886750 135886925 -106777428 - MER5B DNA MER1_type -1 177 1 22 0 0 0 chr1 135890650 135890672 -106773681 + AT_rich Low_complexity Low_complexity 1 22 0 351 283 154 25 chr1 135891824 135892049 -106772304 + MIR SINE MIR 16 255 -7 347 285 150 48 chr1 135892806 135893013 -106771340 + MIR SINE MIR 7 234 -28 360 272 44 25 chr1 135893026 135893172 -106771181 + MER5A DNA MER1_type 1 165 -24 270 318 103 16 chr1 135894935 135895061 -106769292 + MIR SINE MIR 71 207 -55 4342 144 17 11 chr1 135895193 135895950 -106768403 + L1MB7 LINE L1 5407 6168 -16 29 0 0 0 chr1 135895997 135896026 -106768327 + AT_rich Low_complexity Low_complexity 1 29 0 2001 126 0 14 chr1 135896033 135896319 -106768034 - AluJb SINE Alu -20 292 11 1333 123 38 0 chr1 135896331 135896567 -106767786 + L1MA6 LINE L1 6056 6300 0 2228 65 0 4 chr1 135897141 135897416 -106766937 - AluY SINE Alu -37 274 1 349 330 9 0 chr1 135897514 135897620 -106766733 - MIR3 SINE MIR -52 156 50 1135 182 5 10 chr1 135897901 135898104 -106766249 - AluJo SINE Alu -25 287 86 209 176 20 20 chr1 135898454 135898505 -106765848 + CT-rich Low_complexity Low_complexity 2 52 0 878 176 0 26 chr1 135901481 135901634 -106762719 - FRAM SINE Alu -28 148 1 731 164 16 0 chr1 135901644 135901766 -106762587 + MER58B DNA MER1_type 217 340 -1 502 238 22 49 chr1 135902246 135902469 -106761884 + L1MC5 LINE L1 7697 7913 -48 278 211 0 0 chr1 135902477 135902529 -106761824 - MER5B DNA MER1_type -126 52 1 2165 93 33 7 chr1 135903245 135903547 -106760806 - AluSx SINE Alu -2 310 1 331 287 154 57 chr1 135904804 135905135 -106759218 + L1M2 LINE L1 651 1013 -5836 2138 82 0 0 chr1 135905688 135905967 -106758386 + AluSc SINE Alu 1 279 -30 378 200 35 12 chr1 135906360 135906445 -106757908 + MER5A DNA MER1_type 16 102 -87 276 333 56 31 chr1 135906584 135906746 -106757607 - L3 LINE CR1 -66 1511 1346 1604 186 112 55 chr1 135907830 135908024 -106756329 + L1ME1 LINE L1 5569 5751 -415 1653 159 43 84 chr1 135908024 135908415 -106755938 + THE1C LTR MaLR 1 375 0 1604 186 112 55 chr1 135908415 135908784 -106755569 + L1ME1 LINE L1 5751 6164 -2 249 206 0 118 chr1 135909009 135909111 -106755242 - MIR SINE MIR -46 216 127 310 294 29 29 chr1 135909438 135909540 -106754813 + MIR3 SINE MIR 68 169 -39 4267 170 91 13 chr1 135909544 135910525 -106753828 + L1MC3 LINE L1 6527 7583 -202 568 224 7 0 chr1 135910557 135910704 -106753649 + L1MD3 LINE L1 7654 7801 -194 425 270 58 11 chr1 135912630 135912819 -106751534 + L1MD3 LINE L1 7798 7995 0 2150 111 0 22 chr1 135912945 135913261 -106751092 - AluSc SINE Alu 0 309 1 681 245 98 6 chr1 135913479 135913642 -106750711 - MER5A DNA MER1_type -9 180 3 242 159 0 87 chr1 135913710 135913779 -106750574 + L1MC4a LINE L1 6123 6185 -1623 390 153 42 0 chr1 135913787 135913859 -106750494 + L1MC3 LINE L1 7058 7132 -653 1332 130 10 0 chr1 135913878 135914085 -106750268 + MER68 LTR ERV1 57 265 -297 2270 275 137 22 chr1 135914096 135914750 -106749603 - L2 LINE L2 -1867 1447 661 1492 248 81 21 chr1 135914750 135915230 -106749123 + MLT1J LTR MaLR 3 511 0 2270 275 137 22 chr1 135915230 135915470 -106748883 - L2 LINE L2 -2653 661 450 2303 69 3 3 chr1 135915588 135915878 -106748475 + AluY SINE Alu 1 290 -21 442 320 84 45 chr1 135916056 135916412 -106747941 - L2 LINE L2 0 3313 2944 3705 152 42 6 chr1 135916912 135917630 -106746723 - L1MC3 LINE L1 -15 7770 7027 250 272 217 0 chr1 135919253 135919345 -106745008 - L2 LINE L2 -11 3261 3150 244 401 18 30 chr1 135919964 135920131 -106744222 - L2 LINE L2 -2 3270 3106 2076 144 3 3 chr1 135920912 135921217 -106743136 + AluJb SINE Alu 1 305 -7 463 33 16 0 chr1 135921336 135921418 -106742935 + L1PA5 LINE L1 6078 6160 0 2237 103 3 0 chr1 135921666 135921956 -106742397 + AluSg SINE Alu 1 291 -19 7396 41 0 0 chr1 135923354 135924334 -106740019 - L1PA4 LINE L1 0 6155 5176 28165 37 2 1 chr1 135924336 135927955 -106736398 - L1PA4 LINE L1 -1147 4999 1378 1054 98 0 0 chr1 135927974 135928107 -106736246 - AluSq/x SINE Alu -179 133 1 1036 318 61 28 chr1 135928467 135928891 -106735462 - L3 LINE CR1 -57 1520 1083 33 0 0 0 chr1 135929259 135929292 -106735061 + AT_rich Low_complexity Low_complexity 1 33 0 235 325 151 38 chr1 135929473 135929738 -106734615 + L2 LINE L2 2466 2760 -554 370 338 28 14 chr1 135930071 135930089 -106734264 + L2 LINE L2 3123 3139 -133 2214 111 46 32 chr1 135930089 135930459 -106733894 + THE1C LTR MaLR 1 375 0 370 338 28 14 chr1 135930459 135930585 -106733768 + L2 LINE L2 3139 3269 -3 260 309 85 11 chr1 135930936 135931030 -106733323 - L2 LINE L2 -12 3301 3201 2323 96 0 3 chr1 135931243 135931555 -106732798 + AluY SINE Alu 1 311 0 1136 295 94 63 chr1 135932635 135933265 -106731088 - L3 LINE CR1 -1 1576 928 334 333 54 36 chr1 135933504 135933672 -106730681 + MER5B DNA MER1_type 7 177 -1 185 226 19 19 chr1 135933679 135933732 -106730621 - L2 LINE L2 -4 3309 3257 512 221 32 63 chr1 135934626 135934784 -106729569 - MIR SINE MIR -30 232 80 266 111 0 56 chr1 135934892 135934946 -106729407 + MADE1 DNA Mariner 1 51 -29 2329 99 3 0 chr1 135934989 135935292 -106729061 - AluSg SINE Alu -6 304 1 222 318 186 0 chr1 135935612 135935741 -106728612 + L2 LINE L2 2601 2753 -561 819 258 85 16 chr1 135937886 135938192 -106726161 + L1MC4a LINE L1 7137 7463 -345 7357 39 2 0 chr1 135938243 135939604 -106724749 + L1PA4 LINE L1 4793 6155 0 5593 95 29 0 chr1 135939611 135940502 -106723851 + L1P LINE L1 2348 3264 -2882 950 35 0 0 chr1 135940606 135940719 -106723634 + L1PA5 LINE L1 6034 6146 -8 1008 171 64 109 chr1 135940732 135941182 -106723171 + L1MC4 LINE L1 7613 8042 0 330 277 0 12 chr1 135941347 135941430 -106722923 + MIR SINE MIR 66 147 -115 1954 157 165 0 chr1 135941437 135941825 -106722528 + LTR47A LTR ERVL 1 452 0 381 257 28 0 chr1 135941827 135941936 -106722417 + MIR SINE MIR 151 262 0 205 227 93 67 chr1 135941948 135942023 -106722330 + L2 LINE L2 3178 3254 -18 2232 108 23 0 chr1 135942217 135942522 -106721831 - AluSx SINE Alu 0 312 1 2491 43 0 59 chr1 135942918 135943241 -106721112 + AluY SINE Alu 1 304 -7 260 417 34 23 chr1 135943294 135943558 -106720795 + L2 LINE L2 2829 3095 -177 206 294 29 29 chr1 135943577 135943645 -106720708 - MIR3 SINE MIR -3 205 138 696 262 134 5 chr1 135943804 135944006 -106720347 - MIR SINE MIR -12 250 23 329 318 88 41 chr1 135944385 135944555 -106719798 + MIR SINE MIR 75 252 -10 29 0 0 0 chr1 135945133 135945162 -106719191 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 135947845 135947866 -106716487 + AT_rich Low_complexity Low_complexity 1 21 0 2327 113 3 0 chr1 135947955 135948266 -106716087 + AluSx SINE Alu 1 312 0 406 273 33 41 chr1 135948330 135948451 -106715902 + L2 LINE L2 2933 3052 -220 34 0 0 0 chr1 135948541 135948575 -106715778 + AT_rich Low_complexity Low_complexity 1 34 0 511 337 10 44 chr1 135948876 135949081 -106715272 - MIR3 SINE MIR -1 207 10 728 248 37 54 chr1 135949846 135950096 -106714257 + MLT1H1 LTR MaLR 41 261 -294 247 258 41 0 chr1 135950361 135950458 -106713895 + L1ME LINE L1 5652 5752 -369 526 188 0 20 chr1 135950503 135950604 -106713749 + MER5A DNA MER1_type 11 109 -80 2571 58 6 0 chr1 135950747 135951058 -106713295 + AluSp SINE Alu 1 313 0 208 304 274 0 chr1 135951652 135951754 -106712599 + L2 LINE L2 3139 3268 -4 338 289 51 32 chr1 135951873 135952029 -106712324 + L1ME LINE L1 5635 5793 -328 2275 85 0 10 chr1 135952032 135952326 -106712027 - AluSc SINE Alu -18 291 1 343 287 178 46 chr1 135952545 135952719 -106711634 + L2 LINE L2 2895 3091 -181 2456 239 17 42 chr1 135953218 135953632 -106710721 + L1M4 LINE L1 3934 4322 -1824 2355 99 0 3 chr1 135953632 135953934 -106710419 - AluSg SINE Alu -9 301 1 2456 239 17 42 chr1 135953934 135954283 -106710070 + L1M4 LINE L1 4322 4678 -1468 742 167 0 21 chr1 135954292 135954436 -106709917 + L1MC3 LINE L1 7137 7277 -508 605 206 8 0 chr1 135954439 135954570 -106709783 - L1P LINE L1 -1104 5042 4911 365 179 13 0 chr1 135954570 135954639 -106709714 + L1PA16 LINE L1 6088 6166 0 2602 140 37 12 chr1 135954769 135955254 -106709099 + L1MC3 LINE L1 7282 7778 -7 1996 156 7 0 chr1 135955898 135956187 -106708166 + AluSx SINE Alu 1 291 -21 318 50 0 0 chr1 135956359 135956399 -106707954 - MER5B DNA MER1_type -15 163 124 804 246 100 8 chr1 135956771 135957011 -106707342 - MIR SINE MIR 0 262 1 2342 59 0 13 chr1 135958318 135958621 -106705732 - AluY SINE Alu -12 299 1 1273 206 113 59 chr1 135959565 135959953 -106704400 - LTR2 LTR ERV1 0 449 41 267 352 83 9 chr1 135960137 135960245 -106704108 - L2 LINE L2 -42 3230 3115 1979 144 14 0 chr1 135960654 135960946 -106703407 - AluJb SINE Alu -16 296 1 21330 41 2 1 chr1 135961823 135965072 -106699281 + L1PA4 LINE L1 2883 6144 -11 1158 171 67 109 chr1 135965088 135965537 -106698816 + L1MC4 LINE L1 7613 8042 0 225 39 0 0 chr1 135965800 135965826 -106698527 + LTR47A LTR ERVL 1 26 -426 7001 45 5 0 chr1 135965938 135966814 -106697539 - L1P LINE L1 -2805 3341 2462 2854 114 0 0 chr1 135966812 135967198 -106697155 - L1P LINE L1 -5760 386 1 * 297 167 111 14 chr1 135967284 135967356 -106696997 + MLT1J2 LTR MaLR 349 427 -23 553 61 107 150 chr1 135967414 135967590 -106696763 + LTR14B LTR ERVK 1 362 -246 6026 79 30 13 chr1 135967594 135968441 -106695912 + SVA Other Other 6 866 -520 8631 184 33 80 chr1 135968594 135970436 -106693917 + MER52A LTR ERV1 1 1755 0 215 224 61 0 chr1 135970838 135970887 -106693466 + MIR SINE MIR 140 191 -71 420 20 0 0 chr1 135971139 135971188 -106693165 + (CA)n Simple_repeat Simple_repeat 2 50 0 296 322 70 17 chr1 135971333 135971448 -106692905 + MLT1I LTR MaLR 101 221 -188 273 123 0 5 chr1 135971579 135971638 -106692715 + L1MA7 LINE L1 6242 6290 -1 279 100 0 25 chr1 135971815 135971855 -106692498 + LTR6B LTR ERV1 520 558 0 808 256 66 7 chr1 135971881 135972155 -106692198 + L2 LINE L2 2412 2701 -613 6659 113 11 11 chr1 135972605 135973574 -106690779 + LTR5 LTR ERVK 1 969 0 262 215 247 21 chr1 135973584 135973677 -106690676 + L2 LINE L2 3167 3280 -33 3069 58 95 7 chr1 135973691 135974103 -106690250 + LTR7 LTR ERV1 1 448 -2 361 259 63 49 chr1 135974384 135974527 -106689826 + MIR SINE MIR 117 261 -1 228 259 12 49 chr1 135974826 135974907 -106689446 + L2 LINE L2 3235 3312 -1 305 276 106 88 chr1 135975205 135975592 -106688761 - L1M2 LINE L1 -5457 1392 999 3700 174 96 46 chr1 135976025 135976980 -106687373 - L1MD1 LINE L1 -223 6413 5372 987 167 92 44 chr1 135976982 135977213 -106687140 - L1MD1 LINE L1 -3174 3366 3117 2715 133 25 37 chr1 135977213 135977650 -106686703 + MSTB1 LTR MaLR 1 432 0 987 167 92 44 chr1 135977650 135977711 -106686642 - L1MD1 LINE L1 -3423 3117 3060 1228 199 65 78 chr1 135977711 135978093 -106686260 - MLT1D LTR MaLR -127 378 2 6818 187 73 63 chr1 135978097 135978193 -106686160 - L1MD1 LINE L1 -3863 2677 2583 2383 80 3 3 chr1 135978193 135978492 -106685861 - AluSp SINE Alu -14 299 1 6818 187 73 63 chr1 135978492 135979389 -106684964 - L1MD1 LINE L1 -3957 2583 1697 2388 56 3 59 chr1 135979389 135979710 -106684643 - AluY SINE Alu -7 304 2 6818 187 73 63 chr1 135979710 135980817 -106683536 - L1MD1 LINE L1 -4843 1697 294 2421 124 43 0 chr1 135980817 135981164 -106683189 + THE1B LTR MaLR 1 362 -2 6818 187 73 63 chr1 135981164 135981446 -106682907 - L1MD1 LINE L1 -6246 294 16 263 205 66 133 chr1 135981448 135981525 -106682828 + MIR SINE MIR 122 186 -76 2137 95 7 7 chr1 135981525 135981819 -106682534 - AluSx SINE Alu -3 309 16 263 205 66 133 chr1 135981819 135981892 -106682461 + MIR SINE MIR 186 262 0 1121 193 22 5 chr1 135983028 135983251 -106681102 - L1M4 LINE L1 -2384 3762 3536 1976 129 25 3 chr1 135983515 135983801 -106680552 - AluJb SINE Alu -20 292 1 293 295 108 26 chr1 135983805 135984073 -106680280 - L1ME4a LINE L1 -200 5921 5632 473 248 47 16 chr1 135984253 135984382 -106679971 + L2 LINE L2 3180 3312 -1 2394 90 3 0 chr1 135985275 135985576 -106678777 - AluSp SINE Alu -11 302 1 249 327 40 0 chr1 135986194 135986295 -106678058 - L2 LINE L2 -222 3050 2946 591 227 48 3 chr1 135986750 135986898 -106677455 + MIR SINE MIR 43 196 -62 583 239 101 25 chr1 135987703 135987862 -106676491 - MIR SINE MIR -44 218 48 217 355 40 13 chr1 135988225 135988301 -106676052 - L3 LINE CR1 -1 1576 1499 335 236 67 22 chr1 135989025 135989203 -106675150 - L1ME LINE L1 -302 5819 5634 269 345 83 35 chr1 135989271 135989500 -106674853 + L2 LINE L2 1874 2113 -1201 * 451 274 160 11 chr1 135989440 135989615 -106674738 + MIR SINE MIR 52 252 -10 2198 126 0 68 chr1 135990006 135990372 -106673981 - L1MC1 LINE L1 0 6333 5993 1150 215 138 31 chr1 135991271 135991596 -106672757 - MSTD LTR MaLR -36 360 1 2488 67 0 3 chr1 135991963 135992263 -106672090 + AluY SINE Alu 1 299 -12 382 215 37 59 chr1 135992264 135992399 -106671954 + L1ME4a LINE L1 5728 5859 -262 227 294 47 0 chr1 135993072 135993157 -106671196 + L1MC4 LINE L1 6615 6703 -1339 1741 159 3 10 chr1 135993209 135993498 -106670855 + AluJb SINE Alu 14 300 -12 22 0 0 0 chr1 135994443 135994465 -106669888 + AT_rich Low_complexity Low_complexity 1 22 0 529 110 10 90 chr1 135995380 135995480 -106668873 + MER53 DNA DNA 98 189 0 370 289 39 16 chr1 135995535 135995663 -106668690 + MIR SINE MIR 21 151 -111 2216 192 130 16 chr1 135996440 135997079 -106667274 + Tigger7 DNA MER2_type 1 2587 0 524 229 76 92 chr1 135997870 135998119 -106666234 - L1MC4 LINE L1 -312 7730 7486 742 224 168 0 chr1 135998119 135998369 -106665984 + L2 LINE L2 1821 2112 -1202 312 247 0 0 chr1 135998371 135998444 -106665909 - L1M4 LINE L1 -3139 3007 2935 2399 90 0 0 chr1 135999591 135999890 -106664463 + AluSc SINE Alu 1 299 -10 531 269 138 12 chr1 136000155 136000315 -106664038 - MIR3 SINE MIR -15 193 14 1866 108 4 12 chr1 136003211 136003470 -106660883 + AluSx SINE Alu 1 257 -55 940 243 43 31 chr1 136004363 136004618 -106659735 + MIR SINE MIR 5 262 0 222 338 12 25 chr1 136005852 136005932 -106658421 + MIR SINE MIR 32 110 -98 1392 176 45 11 chr1 136007133 136007400 -106656953 + LTR47A LTR ERVL 177 452 0 373 257 28 0 chr1 136007402 136007511 -106656842 + MIR SINE MIR 151 262 0 210 224 35 86 chr1 136007540 136007598 -106656755 + L2 LINE L2 3200 3254 -18 2210 109 23 0 chr1 136007792 136008095 -106656258 - AluSx SINE Alu 0 312 3 21 0 0 0 chr1 136008098 136008119 -106656234 + AT_rich Low_complexity Low_complexity 1 21 0 333 307 257 25 chr1 136008266 136008468 -106655885 - MIR SINE MIR -10 252 4 336 271 85 23 chr1 136011164 136011293 -106653060 - HAL1 LINE L1 -1422 1085 949 28 0 0 0 chr1 136011361 136011389 -106652964 + AT_rich Low_complexity Low_complexity 1 28 0 921 203 58 0 chr1 136011389 136011596 -106652757 - L1MA8 LINE L1 -2 6289 6071 274 292 93 66 chr1 136011617 136011983 -106652370 - HAL1 LINE L1 -1606 901 526 295 188 72 14 chr1 136012163 136012232 -106652121 - HAL1 LINE L1 -2410 97 25 263 303 41 10 chr1 136013021 136013138 -106651215 + MIR SINE MIR 45 166 -65 209 259 274 37 chr1 136013309 136013444 -106650909 + MIR SINE MIR 20 186 -76 1568 203 10 3 chr1 136015425 136015721 -106648632 - AluJb SINE Alu -14 298 1 254 277 96 85 chr1 136016319 136016507 -106647846 + MIR SINE MIR 2 191 -71 809 324 107 11 chr1 136016547 136016920 -106647433 + L2 LINE L2 2905 3313 0 341 224 50 50 chr1 136017568 136017721 -106646632 + MIR SINE MIR 38 193 -69 1989 165 10 0 chr1 136017770 136018079 -106646274 + AluJo SINE Alu 1 312 0 1739 142 51 4 chr1 136018141 136018416 -106645937 + AluSg SINE Alu 1 288 -22 284 306 199 23 chr1 136018857 136019285 -106645068 - L2 LINE L2 -997 2317 1815 1577 183 33 7 chr1 136019814 136020114 -106644239 - AluJb SINE Alu -4 308 1 1710 166 12 43 chr1 136020116 136020385 -106643968 - MER65A LTR ERV1 -130 315 56 1716 172 10 7 chr1 136020385 136020682 -106643671 - AluJo SINE Alu -14 298 1 1710 166 12 43 chr1 136020682 136020737 -106643616 - MER65A LTR ERV1 -389 56 1 2205 162 40 3 chr1 136021373 136021749 -106642604 - MLT1B LTR MaLR 0 390 1 225 347 105 11 chr1 136021843 136021938 -106642415 + L2 LINE L2 3208 3311 -2 2431 161 26 10 chr1 136022242 136022658 -106641695 - MSTB LTR MaLR 0 426 4 304 345 28 28 chr1 136022884 136023029 -106641324 + L3 LINE CR1 1421 1565 -12 195 295 77 0 chr1 136023675 136023753 -106640600 - MIR SINE MIR -108 154 71 2009 167 46 0 chr1 136027437 136027766 -106636587 + MER2 DNA MER2_type 1 344 0 2217 101 14 0 chr1 136028434 136028722 -106635631 - AluSc SINE Alu -14 295 4 255 93 163 0 chr1 136028729 136028772 -106635581 - AluSc SINE Alu -5 294 245 9600 144 91 77 chr1 136028772 136029045 -106635308 + L1MA8 LINE L1 2903 3171 -3120 2307 61 7 0 chr1 136029045 136029346 -106635007 + AluY SINE Alu 1 303 0 9600 144 91 77 chr1 136029346 136029477 -106634876 + L1MA8 LINE L1 3171 3299 -2992 1977 119 70 0 chr1 136029477 136029762 -106634591 + AluSq SINE Alu 1 305 -8 9600 144 91 77 chr1 136029762 136029884 -106634469 + L1MA8 LINE L1 3299 3418 -2873 1670 184 10 14 chr1 136029884 136030178 -106634175 + AluJo SINE Alu 1 293 -19 9600 144 91 77 chr1 136030178 136030709 -106633644 + L1MA8 LINE L1 3418 3940 -2351 288 0 0 0 chr1 136030709 136030741 -106633612 + (C)n Simple_repeat Simple_repeat 1 32 0 9600 144 91 77 chr1 136030741 136033024 -106631329 + L1MA8 LINE L1 3940 6289 -2 3470 155 25 5 chr1 136033494 136034517 -106629836 + L1M1 LINE L1 4683 5721 -582 8809 161 13 20 chr1 136034523 136036128 -106628225 + L1P LINE L1 770 2363 -3783 * 12500 29 8 0 chr1 136036126 136037587 -106626766 + L1P LINE L1 3516 4987 -1159 1402 86 0 0 chr1 136037688 136037862 -106626491 + AluSc SINE Alu 132 305 -4 2679 82 0 0 chr1 136037862 136038218 -106626135 + L1PA7 LINE L1 4239 4594 -1552 7029 67 21 3 chr1 136038223 136039719 -106624634 + L1PA7 LINE L1 4670 6154 0 430 343 64 11 chr1 136039959 136040274 -106624079 + L1ME LINE L1 5363 5698 -423 334 198 26 95 chr1 136040459 136040575 -106623778 + L1ME LINE L1 5707 5814 -307 331 235 80 75 chr1 136040617 136040804 -106623549 + MLT1J LTR MaLR 1 188 -323 335 309 80 50 chr1 136040840 136041177 -106623176 + L1MEc LINE L1 249 595 -6012 1645 269 66 53 chr1 136041398 136041769 -106622584 + L1MEc LINE L1 714 1079 -5347 2480 134 28 14 chr1 136041769 136042128 -106622225 - THE1B LTR MaLR 0 364 1 1645 269 66 53 chr1 136042128 136042849 -106621504 + L1MEc LINE L1 1079 1766 -4660 251 201 0 32 chr1 136042865 136042937 -106621416 + L1MEc LINE L1 1680 1805 -4621 7422 175 9 39 chr1 136042947 136045312 -106619041 + L1PA8A LINE L1 8 2429 -4032 2332 100 3 3 chr1 136045312 136045621 -106618732 + AluSq SINE Alu 1 309 -4 7422 175 9 39 chr1 136045621 136045897 -106618456 + L1PA8A LINE L1 2429 2712 -3749 1080 75 0 8 chr1 136046745 136046878 -106617475 + AluSq/x SINE Alu 19 150 -162 1839 105 30 19 chr1 136047390 136047657 -106616696 + L1PA10 LINE L1 5899 6168 0 4976 149 4 4 chr1 136047657 136048491 -106615862 + L1PA8A LINE L1 2692 3525 -2936 792 143 8 0 chr1 136048503 136048622 -106615731 + L1MA3 LINE L1 6186 6305 0 43176 36 24 3 chr1 136048704 136054730 -106609623 - L1PA3 LINE L1 -3 6152 1 14437 122 16 2 chr1 136054744 136057624 -106606729 + L1PA8A LINE L1 3520 6445 -1 1001 276 35 0 chr1 136057627 136057939 -106606414 + L1MEc LINE L1 1838 2160 -4447 234 282 0 0 chr1 136058046 136058124 -106606229 + L1MEc LINE L1 2200 2277 -4330 625 92 73 0 chr1 136058133 136058242 -106606111 - Charlie5 DNA MER1_type 0 2613 2497 4009 194 62 131 chr1 136058258 136059194 -106605159 + L1MCa LINE L1 46 993 -5571 2178 105 6 29 chr1 136059194 136059508 -106604845 + AluSg SINE Alu 1 307 -3 4009 194 62 131 chr1 136059508 136060226 -106604127 + L1MCa LINE L1 993 1758 -4806 343 298 97 8 chr1 136110299 136110423 -106553930 + L2 LINE L2 3136 3270 -2 7694 182 19 24 chr1 136111394 136112968 -106551385 - L1P LINE L1 -1412 4734 3168 22 56 0 0 chr1 136113122 136113158 -106551195 + AT_rich Low_complexity Low_complexity 1 36 0 2215 96 13 7 chr1 136113380 136113683 -106550670 + AluSg SINE Alu 1 305 -5 27 81 0 0 chr1 136113779 136113841 -106550512 + AT_rich Low_complexity Low_complexity 1 62 0 507 305 129 9 chr1 136114825 136115058 -106549295 + L3 LINE CR1 1282 1542 -35 334 186 155 62 chr1 136115133 136115262 -106549091 - MIR SINE MIR -1 261 121 1654 319 313 8 chr1 136115265 136116177 -106548176 + L2 LINE L2 1179 2368 -946 582 312 93 52 chr1 136116238 136116581 -106547772 + LTR16A LTR ERVL 88 444 -6 376 305 71 7 chr1 136116598 136116739 -106547614 + HERV16 LTR ERVL 12 161 -4835 626 248 98 5 chr1 136116745 136116959 -106547394 - L1MCa LINE L1 -3567 2859 2626 426 165 66 20 chr1 136117411 136117532 -106546821 - L1ME3A LINE L1 -295 5869 5741 814 165 100 10 chr1 136117837 136118037 -106546316 + L1ME2 LINE L1 5651 5868 -296 562 296 49 70 chr1 136118092 136118434 -106545919 - L2 LINE L2 -199 3114 2782 282 56 0 0 chr1 136118520 136118556 -106545797 + (CA)n Simple_repeat Simple_repeat 2 37 0 189 0 0 0 chr1 136118555 136118576 -106545777 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 322 232 126 0 chr1 136118576 136118671 -106545682 - L1ME1 LINE L1 -118 6048 5942 1269 103 0 0 chr1 136119013 136119178 -106545175 - AluSx SINE Alu -115 197 33 520 254 61 33 chr1 136119184 136119397 -106544956 - L1MCa LINE L1 -4785 1641 1423 251 380 0 19 chr1 136119421 136119529 -106544824 - L2 LINE L2 -589 2725 2620 305 250 9 0 chr1 136119529 136119637 -106544716 + (TA)n Simple_repeat Simple_repeat 2 110 0 1968 134 21 3 chr1 136119637 136119921 -106544432 - AluSq SINE Alu -24 289 1 630 267 28 40 chr1 136120049 136120296 -106544057 - L2 LINE L2 -906 2408 2165 27 0 0 0 chr1 136121021 136121048 -106543305 + AT_rich Low_complexity Low_complexity 1 27 0 223 250 17 0 chr1 136121150 136121210 -106543143 + CT-rich Low_complexity Low_complexity 2 62 0 504 241 58 27 chr1 136121341 136121565 -106542788 - L1ME1 LINE L1 -247 5874 5644 1952 104 8 4 chr1 136121583 136121878 -106542475 - AluSq SINE Alu 0 309 14 361 243 137 71 chr1 136122215 136122441 -106541912 + MIR SINE MIR 2 242 -20 622 318 18 0 chr1 136122465 136122685 -106541668 + L2 LINE L2 2554 2777 -537 396 292 163 17 chr1 136122769 136122947 -106541406 + L2 LINE L2 2726 2929 -385 2147 186 105 5 chr1 136123305 136123724 -106540629 + MLT1D LTR MaLR 45 505 0 15852 171 117 11 chr1 136124301 136128403 -106535950 - L1PA12 LINE L1 -3049 4535 1 1246 239 9 3 chr1 136128406 136128724 -106535629 - L1ME1 LINE L1 -777 5369 5050 490 147 0 0 chr1 136128729 136128804 -106535549 + L1PA12 LINE L1 329 403 -7178 362 157 0 22 chr1 136128852 136128941 -106535412 - L1ME1 LINE L1 -1086 5060 4974 882 197 39 6 chr1 136129900 136130078 -106534275 + AluJo SINE Alu 24 207 -105 514 176 66 0 chr1 136130223 136130314 -106534039 + AluSg/x SINE Alu 188 284 -26 309 333 81 0 chr1 136130490 136130601 -106533752 + L2 LINE L2 3153 3272 0 21 36 0 0 chr1 136131258 136131286 -106533067 + AT_rich Low_complexity Low_complexity 1 28 0 205 179 0 0 chr1 136131438 136131477 -106532876 + A-rich Low_complexity Low_complexity 2 40 0 14377 131 35 65 chr1 136131735 136133006 -106531347 + Tigger1 DNA MER2_type 1 1163 -1255 2198 92 7 7 chr1 136133006 136133301 -106531052 + AluY SINE Alu 1 295 -16 14377 131 35 65 chr1 136133301 136134521 -106529832 + Tigger1 DNA MER2_type 1163 2418 0 531 232 86 0 chr1 136134835 136134986 -106529367 + MIR SINE MIR 98 261 -1 780 294 24 0 chr1 136135152 136135363 -106528990 + MIR SINE MIR 6 221 -41 414 325 75 12 chr1 136135932 136136184 -106528169 + L2 LINE L2 2156 2423 -891 1983 101 77 0 chr1 136136328 136136614 -106527739 - AluSc SINE Alu -1 308 1 328 53 0 0 chr1 136136967 136137005 -106527348 - LTR3b LTR ERVK 0 500 463 2285 120 14 23 chr1 136137005 136137355 -106526998 - LTR3b LTR ERVK 0 500 154 2029 121 7 0 chr1 136137768 136138078 -106526275 + AluSx SINE Alu 1 312 0 1160 307 96 47 chr1 136138212 136138815 -106525538 - L2 LINE L2 -52 3261 2586 2465 88 0 0 chr1 136138815 136139123 -106525230 + AluSg SINE Alu 1 308 -2 1160 307 96 47 chr1 136139123 136139531 -106524822 - L2 LINE L2 -727 2586 2199 195 217 174 0 chr1 136139695 136139764 -106524589 - MIR3 SINE MIR -22 186 106 294 297 49 25 chr1 136140306 136140430 -106523923 - MIR3 SINE MIR -51 157 30 203 346 128 15 chr1 136140430 136140563 -106523790 + MIR SINE MIR 2 149 -113 397 299 32 32 chr1 136141105 136141262 -106523091 - MIR3 SINE MIR -37 171 15 297 0 0 0 chr1 136141476 136141509 -106522844 + (CA)n Simple_repeat Simple_repeat 2 34 0 827 226 54 6 chr1 136142129 136142297 -106522056 + MER5B DNA MER1_type 3 178 0 402 294 56 12 chr1 136142416 136142576 -106521777 - MIR SINE MIR -82 180 14 410 224 98 42 chr1 136143381 136143524 -106520829 - MIR3 SINE MIR -38 170 20 501 221 131 45 chr1 136143904 136144103 -106520250 - MIR SINE MIR 0 262 47 785 239 157 13 chr1 136145089 136145407 -106518946 + L1M4 LINE L1 3872 4235 -1911 275 310 0 18 chr1 136145819 136145932 -106518421 - L1MC4 LINE L1 -1318 6724 6614 219 292 115 31 chr1 136146041 136146137 -106518216 - L2 LINE L2 0 3313 3210 531 210 56 7 chr1 136146898 136146912 -106517441 - MIR SINE MIR 0 262 250 2076 151 38 30 chr1 136146912 136147284 -106517069 - THE1C LTR MaLR 0 375 1 531 210 56 7 chr1 136147284 136147412 -106516941 - MIR SINE MIR -12 250 113 796 266 93 8 chr1 136147960 136148197 -106516156 + MIR SINE MIR 6 262 0 2212 118 0 0 chr1 136148447 136148744 -106515609 + AluSc SINE Alu 1 297 -12 212 271 17 0 chr1 136148758 136148817 -106515536 + L3b LINE CR1 1295 1354 -229 2303 70 43 3 chr1 136149035 136149334 -106515019 - AluY SINE Alu 0 311 1 183 336 18 36 chr1 136150362 136150472 -106513881 + MIR SINE MIR 110 217 -45 449 302 63 60 chr1 136150517 136150769 -106513584 - MIR SINE MIR -2 260 8 225 0 0 0 chr1 136150910 136150935 -106513418 + (CA)n Simple_repeat Simple_repeat 1 25 0 237 319 85 0 chr1 136151272 136151366 -106512987 + L2 LINE L2 3202 3303 -10 215 317 30 79 chr1 136151581 136151682 -106512671 + MIR SINE MIR 20 115 -147 295 274 48 27 chr1 136151687 136151833 -106512520 + L2 LINE L2 1823 1971 -1343 843 141 0 8 chr1 136151849 136151977 -106512376 - FLAM_C SINE Alu -16 127 1 367 296 184 0 chr1 136152106 136152258 -106512095 - MIR SINE MIR -6 256 77 602 301 96 15 chr1 136152285 136152617 -106511736 + L2 LINE L2 2069 2427 -887 405 338 170 26 chr1 136152860 136153171 -106511182 + L2 LINE L2 2917 3272 0 541 250 21 7 chr1 136155053 136155193 -106509160 - MIR3 SINE MIR -2 206 65 2453 75 0 0 chr1 136155602 136155897 -106508456 + AluY SINE Alu 1 295 -16 225 222 19 0 chr1 136156571 136156625 -106507728 - MIR3 SINE MIR -2 206 152 308 250 0 0 chr1 136157964 136158032 -106506321 - MIR SINE MIR -10 252 185 2376 91 0 3 chr1 136158339 136158648 -106505705 - AluSq SINE Alu -5 308 1 1148 169 65 68 chr1 136159560 136159885 -106504468 + MER5C DNA MER1_type 1 324 0 425 212 144 23 chr1 136159930 136160062 -106504291 - MER112 DNA MER1_type -25 235 88 1541 162 85 56 chr1 136160185 136160598 -106503755 + LTR37A LTR ERV1 1 425 -1 424 287 8 54 chr1 136160949 136161078 -106503275 + MIR SINE MIR 16 138 -70 264 304 89 9 chr1 136161551 136161663 -106502690 + L2 LINE L2 3111 3231 -41 350 252 104 60 chr1 136161717 136161967 -106502386 + L2 LINE L2 2241 2501 -813 532 194 155 0 chr1 136162006 136162109 -106502244 - FLAM_A SINE Alu -10 123 5 307 324 143 0 chr1 136162218 136162400 -106501953 - MIR SINE MIR -50 212 5 4434 107 13 33 chr1 136162512 136163213 -106501140 - LTR12 LTR ERV1 0 688 2 311 356 84 47 chr1 136163314 136163673 -106500680 + L2 LINE L2 2831 3202 -70 948 171 123 115 chr1 136163678 136164052 -106500301 - LTR16A1 LTR ERVL 0 457 81 2473 63 7 7 chr1 136164535 136164836 -106499517 - AluY SINE Alu -10 301 1 2395 88 7 0 chr1 136164838 136165146 -106499207 - AluSp SINE Alu -3 310 1 413 244 0 0 chr1 136165617 136165703 -106498650 - MIR SINE MIR -130 132 47 340 331 42 57 chr1 136166980 136167312 -106497041 + LTR16C LTR ERVL 116 442 -49 766 158 43 103 chr1 136167976 136168160 -106496193 + FRAM SINE Alu 1 173 -3 257 271 252 0 chr1 136168849 136168956 -106495397 + L2 LINE L2 3180 3313 0 588 220 11 68 chr1 136169000 136169177 -106495176 + MIR SINE MIR 7 173 -89 227 241 0 19 chr1 136169220 136169274 -106495079 + MIR SINE MIR 175 227 -35 333 47 0 0 chr1 136169380 136169423 -106494930 + (TC)n Simple_repeat Simple_repeat 2 44 0 2098 110 0 21 chr1 136169423 136169713 -106494640 - AluSx SINE Alu -28 284 1 190 276 0 0 chr1 136169763 136169821 -106494532 + MIR SINE MIR 205 262 0 180 382 40 7 chr1 136170613 136170765 -106493588 - L2 LINE L2 -212 3060 2904 265 280 76 32 chr1 136171082 136171239 -106493114 - L2 LINE L2 -457 2857 2694 183 250 0 36 chr1 136172478 136172534 -106491819 - L2 LINE L2 -649 2665 2612 302 312 77 8 chr1 136172580 136172722 -106491631 - MIR SINE MIR -62 146 43 294 270 46 87 chr1 136173689 136173885 -106490468 + MER5A DNA MER1_type 1 188 -1 2181 119 0 7 chr1 136174292 136174594 -106489759 + AluSg SINE Alu 1 300 -10 206 320 50 0 chr1 136174700 136174800 -106489553 - L2 LINE L2 -1743 1571 1467 195 233 133 0 chr1 136174798 136174858 -106489495 + MIR3 SINE MIR 138 205 -3 * 611 288 93 9 chr1 136175684 136175910 -106488443 + MIR SINE MIR 18 262 0 26 0 0 0 chr1 136175910 136175936 -106488417 + AT_rich Low_complexity Low_complexity 1 26 0 2451 109 0 0 chr1 136175970 136176282 -106488071 + AluSx SINE Alu 1 312 0 2606 56 3 0 chr1 136176418 136176723 -106487630 - AluSp SINE Alu -6 307 2 2385 88 0 3 chr1 136176867 136177164 -106487189 - AluSq SINE Alu -17 296 1 1644 177 25 37 chr1 136177165 136177322 -106487031 - MER58B DNA MER1_type -2083 337 180 1847 166 24 0 chr1 136177322 136177611 -106486742 - AluJo SINE Alu -16 296 1 1644 177 25 37 chr1 136177611 136177780 -106486573 - MER58B DNA MER1_type -2240 180 15 206 311 67 22 chr1 136178009 136178099 -106486254 + L2 LINE L2 3180 3273 -40 354 23 0 0 chr1 136178270 136178313 -106486040 + (TC)n Simple_repeat Simple_repeat 2 44 0 2080 128 7 0 chr1 136178455 136178751 -106485602 + AluSx SINE Alu 1 298 -14 288 286 45 38 chr1 136178954 136179087 -106485266 + L2 LINE L2 3179 3312 -1 842 150 0 0 chr1 136180972 136181105 -106483248 - FLAM_C SINE Alu 0 133 1 244 295 76 19 chr1 136181288 136181393 -106482960 + MIR SINE MIR 1 111 -151 883 250 32 24 chr1 136181419 136181667 -106482686 - MIR SINE MIR -1 261 12 346 190 101 13 chr1 136181681 136181760 -106482593 + MIR SINE MIR 148 233 -29 234 318 68 0 chr1 136181854 136181942 -106482411 - MIR SINE MIR -79 129 36 23 0 0 0 chr1 136182729 136182752 -106481601 + AT_rich Low_complexity Low_complexity 1 23 0 2493 80 0 3 chr1 136182969 136183281 -106481072 - AluY SINE Alu 0 311 1 228 299 69 0 chr1 136183318 136183405 -106480948 - MIR3 SINE MIR -6 202 110 484 302 29 12 chr1 136183864 136184036 -106480317 + MIR SINE MIR 2 176 -86 26 0 0 0 chr1 136184115 136184141 -106480212 + AT_rich Low_complexity Low_complexity 1 26 0 550 256 12 36 chr1 136184453 136184621 -106479732 + MIR SINE MIR 4 167 -95 23 0 0 0 chr1 136184673 136184696 -106479657 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr1 136185301 136185341 -106479012 + (TC)n Simple_repeat Simple_repeat 1 40 0 30 0 0 0 chr1 136185600 136185630 -106478723 + AT_rich Low_complexity Low_complexity 1 30 0 444 19 0 0 chr1 136186146 136186199 -106478154 + (GA)n Simple_repeat Simple_repeat 1 53 0 387 0 0 0 chr1 136186198 136186241 -106478112 + (TG)n Simple_repeat Simple_repeat 1 43 0 * 276 275 0 25 chr1 136186306 136186386 -106477967 + GA-rich Low_complexity Low_complexity 5 82 0 314 279 18 18 chr1 136186906 136187017 -106477336 + GA-rich Low_complexity Low_complexity 1 111 0 182 194 0 0 chr1 136187389 136187425 -106476928 + MIR SINE MIR 112 147 -61 201 275 110 11 chr1 136188668 136188759 -106475594 - MIR3 SINE MIR -3 205 106 353 298 32 8 chr1 136189040 136189164 -106475189 - L2 LINE L2 0 3272 3146 194 274 158 42 chr1 136190833 136190928 -106473425 - MIR SINE MIR -75 187 82 2346 67 17 7 chr1 136191073 136191370 -106472983 + AluY SINE Alu 1 300 -11 347 248 177 21 chr1 136191496 136191637 -106472716 + MIR3 SINE MIR 46 208 0 229 190 35 17 chr1 136192188 136192246 -106472107 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 433 335 78 30 chr1 136193374 136193705 -106470648 + L2 LINE L2 2925 3271 -1 25 0 0 0 chr1 136193726 136193751 -106470602 + AT_rich Low_complexity Low_complexity 1 25 0 382 115 68 48 chr1 136193757 136193841 -106470512 + FLAM_A SINE Alu 42 124 -9 2238 135 0 0 chr1 136193986 136194298 -106470055 - AluSx SINE Alu 0 312 1 470 255 23 38 chr1 136195779 136195962 -106468391 + MIR SINE MIR 67 245 -17 247 245 143 0 chr1 136196012 136196110 -106468243 - MIR SINE MIR -28 234 123 510 251 127 0 chr1 136196120 136196294 -106468059 - MIR SINE MIR -17 245 45 602 283 42 19 chr1 136196511 136196806 -106467547 + MSTC LTR MaLR 1 306 -90 470 255 23 38 chr1 136197462 136197645 -106466708 + MIR SINE MIR 67 245 -17 247 245 143 0 chr1 136197695 136197793 -106466560 - MIR SINE MIR -28 234 123 510 251 127 0 chr1 136197803 136197977 -106466376 - MIR SINE MIR -17 245 45 1389 237 75 27 chr1 136198194 136198569 -106465784 + MSTD LTR MaLR 1 393 -3 306 310 23 117 chr1 136198637 136198937 -106465416 - L2 LINE L2 -8 3264 2993 2263 103 10 3 chr1 136199031 136199341 -106465012 + AluSp SINE Alu 1 312 -1 239 301 98 79 chr1 136200038 136200304 -106464049 + L2 LINE L2 2993 3263 -9 23 33 0 0 chr1 136201097 136201127 -106463226 + AT_rich Low_complexity Low_complexity 1 30 0 479 366 6 0 chr1 136201355 136201527 -106462826 + MIR SINE MIR 25 197 -65 444 286 95 7 chr1 136201793 136201940 -106462413 - MIR SINE MIR -70 192 33 1941 121 0 28 chr1 136202808 136203131 -106461222 - AluSg SINE Alu 0 315 1 1962 156 17 3 chr1 136203153 136203455 -106460898 - AluJb SINE Alu -6 306 1 192 238 0 24 chr1 136204596 136204638 -106459715 - L2 LINE L2 -16 3256 3216 444 201 164 31 chr1 136204656 136204815 -106459538 - MER104 DNA Tc2 0 180 1 517 237 79 40 chr1 136204819 136204996 -106459357 - MIR SINE MIR -71 191 8 669 298 110 14 chr1 136205289 136205635 -106458718 - L3 LINE CR1 -248 1329 951 201 147 0 0 chr1 136205815 136205849 -106458504 + (T)n Simple_repeat Simple_repeat 1 34 0 332 301 20 38 chr1 136205908 136206116 -106458237 - L3 LINE CR1 -860 717 467 208 387 58 7 chr1 136206119 136206274 -106458079 - MIR SINE MIR -54 208 46 2174 89 0 54 chr1 136207017 136207332 -106457021 + AluSq SINE Alu 1 298 -15 743 154 0 59 chr1 136207336 136207472 -106456881 + FLAM_C SINE Alu 2 129 -14 21 36 0 0 chr1 136207475 136207503 -106456850 + AT_rich Low_complexity Low_complexity 1 28 0 369 340 37 25 chr1 136208303 136208465 -106455888 - L2 LINE L2 0 3272 3109 2302 77 3 3 chr1 136208757 136209065 -106455288 + AluSp SINE Alu 1 308 0 324 384 60 8 chr1 136209126 136209392 -106454961 - L2 LINE L2 -557 2757 2478 1448 249 76 18 chr1 136209502 136210094 -106454259 + L2 LINE L2 2690 3313 0 290 287 120 0 chr1 136210369 136210477 -106453876 + MARNA DNA Mariner 72 192 -394 259 261 0 14 chr1 136210417 136210486 -106453867 - MARNA DNA Mariner -134 452 385 * 396 305 53 0 chr1 136210501 136210652 -106453701 - MIR SINE MIR -2 260 102 210 253 253 0 chr1 136210818 136210917 -106453436 + MIR SINE MIR 56 179 -83 311 235 83 38 chr1 136211191 136211323 -106453030 + MIR SINE MIR 51 188 -74 1207 157 34 10 chr1 136211573 136211777 -106452576 - MER3 DNA MER1_type 0 209 1 349 359 0 0 chr1 136211891 136212019 -106452334 - MIR3 SINE MIR -10 198 71 569 187 60 108 chr1 136213052 136213183 -106451170 - MER69A DNA AcHobo -2349 177 54 2473 59 0 7 chr1 136213183 136213490 -106450863 + AluY SINE Alu 1 305 -6 569 187 60 108 chr1 136213490 136213524 -106450829 - MER69A DNA AcHobo -2472 54 20 1899 125 3 78 chr1 136216074 136216395 -106447958 + AluSx SINE Alu 16 312 0 452 315 125 92 chr1 136216417 136217207 -106447146 - L2 LINE L2 -649 2665 1850 2502 84 3 0 chr1 136217342 136217653 -106446700 - AluSp SINE Alu -1 312 1 189 200 0 100 chr1 136217936 136217996 -106446357 - MIR SINE MIR -93 169 116 282 253 7 130 chr1 136218610 136218684 -106445669 - L2 LINE L2 0 3313 3264 2319 58 0 48 chr1 136218684 136218994 -106445359 + AluY SINE Alu 17 311 0 282 253 7 130 chr1 136218994 136219065 -106445288 - L2 LINE L2 -49 3264 3186 2168 133 0 0 chr1 136219300 136219601 -106444752 - AluSx SINE Alu -11 301 1 2198 108 0 7 chr1 136219891 136220188 -106444165 + AluSq SINE Alu 1 295 -18 363 306 135 48 chr1 136220267 136220496 -106443857 + MIR SINE MIR 11 259 -3 331 254 45 45 chr1 136220498 136220608 -106443745 - MIR3 SINE MIR -91 117 8 430 254 67 0 chr1 136220711 136220845 -106443508 - MIR SINE MIR -15 247 105 481 245 50 7 chr1 136221776 136221915 -106442438 - MIR SINE MIR 0 262 118 248 366 122 32 chr1 136221927 136222173 -106442180 + L2 LINE L2 2979 3246 -26 21 82 0 0 chr1 136222901 136222950 -106441403 + AT_rich Low_complexity Low_complexity 1 49 0 196 340 43 0 chr1 136224421 136224515 -106439838 + MIR3 SINE MIR 105 202 -6 387 0 0 0 chr1 136224558 136224601 -106439752 + (TG)n Simple_repeat Simple_repeat 2 44 0 1627 131 156 10 chr1 136225005 136225319 -106439034 + MER46B DNA MER2_type 1 235 -1 261 337 11 100 chr1 136225562 136225586 -106438767 + MIR3 SINE MIR 29 54 -154 2429 103 0 0 chr1 136225586 136225897 -106438456 - AluSx SINE Alu -1 311 1 261 337 11 100 chr1 136225897 136226062 -106438291 + MIR3 SINE MIR 54 201 -7 285 252 170 14 chr1 136227653 136227800 -106436553 - MIR SINE MIR -2 260 91 415 277 13 76 chr1 136227918 136228142 -106436211 + MIR SINE MIR 49 258 -4 926 186 113 157 chr1 136228784 136229373 -106434980 - L1ME4a LINE L1 -3 6118 5562 1942 181 9 0 chr1 136229373 136229711 -106434642 + MER58B DNA MER1_type 1 341 0 926 186 113 157 chr1 136229711 136229810 -106434543 - L1ME4a LINE L1 -559 5562 5460 182 268 0 0 chr1 136229816 136229857 -106434496 - L2 LINE L2 -10 3262 3222 210 37 0 0 chr1 136230104 136230131 -106434222 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2148 128 0 0 chr1 136230135 136230424 -106433929 - AluSx SINE Alu -23 289 1 1644 177 25 37 chr1 136230425 136230582 -106433771 - MER58B DNA MER1_type -2083 337 180 1839 167 24 0 chr1 136230582 136230870 -106433483 - AluJo SINE Alu -17 295 1 1644 177 25 37 chr1 136230870 136231039 -106433314 - MER58B DNA MER1_type -2240 180 15 206 311 67 22 chr1 136231268 136231358 -106432995 + L2 LINE L2 3180 3273 -40 195 125 0 0 chr1 136231528 136231568 -106432785 + (TC)n Simple_repeat Simple_repeat 1 40 0 322 102 0 20 chr1 136231780 136231829 -106432524 + Alu SINE Alu 247 294 -6 2292 102 3 0 chr1 136231911 136232205 -106432148 - AluSp SINE Alu -18 295 1 211 303 7 76 chr1 136233618 136233763 -106430590 - MIR SINE MIR -44 218 84 229 366 57 5 chr1 136234034 136234228 -106430125 + L2 LINE L2 2450 2653 -661 319 273 86 27 chr1 136234527 136234714 -106429639 + L2 LINE L2 2878 3075 -197 207 69 0 0 chr1 136234873 136234902 -106429451 + (TC)n Simple_repeat Simple_repeat 2 30 0 229 271 103 19 chr1 136235338 136235445 -106428908 + L2 LINE L2 3190 3305 -8 306 0 0 0 chr1 136235618 136235652 -106428701 + (TG)n Simple_repeat Simple_repeat 1 34 0 1151 191 50 6 chr1 136235688 136236099 -106428254 - Charlie4a DNA MER1_type 0 508 48 3573 192 32 16 chr1 136237175 136237916 -106426437 - L1MB7 LINE L1 0 6184 5432 765 167 0 0 chr1 136237926 136238052 -106426301 - FLAM_C SINE Alu -7 136 11 573 242 92 7 chr1 136238506 136238659 -106425694 + MIR SINE MIR 89 254 -8 389 240 97 51 chr1 136238854 136239029 -106425324 + MIR SINE MIR 2 184 -78 477 293 33 47 chr1 136239228 136239440 -106424913 + MIR SINE MIR 40 248 -14 232 328 60 26 chr1 136239760 136239876 -106424477 + L2 LINE L2 3139 3258 -14 638 258 60 37 chr1 136240598 136240815 -106423538 - MIR SINE MIR 0 262 41 205 138 0 0 chr1 136240910 136240939 -106423414 + (CACCAT)n Simple_repeat Simple_repeat 5 33 0 270 317 62 101 chr1 136241232 136241538 -106422815 + L2 LINE L2 2977 3270 -2 657 212 17 0 chr1 136243415 136243533 -106420820 + FLAM_C SINE Alu 3 122 -21 203 0 37 0 chr1 136243533 136243560 -106420793 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1727 124 16 32 chr1 136244410 136244725 -106419628 - AluY SINE Alu -1 310 1 222 233 0 33 chr1 136248095 136248155 -106416198 + G-rich Low_complexity Low_complexity 1 58 0 213 39 0 0 chr1 136248201 136248227 -106416126 + (CCG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr1 136249887 136249909 -106414444 + AT_rich Low_complexity Low_complexity 1 22 0 2301 99 0 3 chr1 136249909 136250212 -106414141 - AluSx SINE Alu -10 302 1 2281 84 3 17 chr1 136250222 136250520 -106413833 - AluSg SINE Alu -16 294 1 190 282 113 14 chr1 136250926 136250997 -106413356 + MIR SINE MIR 65 142 -66 2241 95 0 41 chr1 136251504 136251820 -106412533 - AluSg SINE Alu -7 303 1 1592 196 107 27 chr1 136251826 136252276 -106412077 - Charlie4a DNA MER1_type -3 505 20 2094 138 38 35 chr1 136254952 136255349 -106409004 - L1MA8 LINE L1 -243 6048 5651 453 340 7 7 chr1 136255354 136255495 -106408858 - L2 LINE L2 -11 3261 3121 1032 288 179 27 chr1 136255691 136256576 -106407777 - L2 LINE L2 -834 2480 1462 759 225 54 36 chr1 136256857 136257079 -106407274 + MIR SINE MIR 11 236 -26 269 299 41 10 chr1 136260165 136260262 -106404091 - MIR3 SINE MIR -30 178 79 221 326 84 69 chr1 136261989 136262299 -106402054 - L2 LINE L2 -30 3242 2936 2013 116 3 7 chr1 136262853 136263156 -106401197 - AluSx SINE Alu -10 302 1 332 274 211 17 chr1 136263258 136263433 -106400920 - L1ME4a LINE L1 -44 6077 5869 2261 70 0 20 chr1 136264501 136264801 -106399552 + AluY SINE Alu 1 294 -17 211 277 73 73 chr1 136264838 136264975 -106399378 - L2 LINE L2 -4 3309 3173 28 29 0 0 chr1 136273172 136273207 -106391146 + AT_rich Low_complexity Low_complexity 1 35 0 202 299 181 0 chr1 136275134 136275261 -106389092 - MIR SINE MIR -10 252 103 591 183 176 0 chr1 136276362 136276493 -106387860 + MER45A DNA AcHobo 20 173 -5 322 202 45 56 chr1 136276706 136276795 -106387558 - L2 LINE L2 0 3313 3226 2578 33 0 0 chr1 136277036 136277335 -106387018 + AluY SINE Alu 1 299 -12 208 293 0 0 chr1 136278884 136278942 -106385411 + (CATA)n Simple_repeat Simple_repeat 2 59 0 913 327 126 28 chr1 136279180 136279547 -106384806 + L2 LINE L2 2317 2646 -667 2183 98 0 3 chr1 136279547 136279852 -106384501 + AluSc SINE Alu 1 304 -5 913 327 126 28 chr1 136279852 136280205 -106384148 + L2 LINE L2 2646 2963 -350 252 0 0 0 chr1 136280205 136280233 -106384120 + (CA)n Simple_repeat Simple_repeat 2 29 0 913 327 126 28 chr1 136280233 136280404 -106383949 + L2 LINE L2 2963 3311 -2 1134 329 106 18 chr1 136281045 136281763 -106382590 - L3 LINE CR1 -85 1492 712 850 117 25 43 chr1 136281878 136282040 -106382313 - L1MB3 LINE L1 -32 6151 5993 1633 211 50 16 chr1 136282045 136282584 -106381769 - L1M1 LINE L1 -706 5597 5025 248 297 79 30 chr1 136282593 136282694 -106381659 - L3 LINE CR1 -988 589 484 234 357 7 49 chr1 136282741 136282884 -106381469 - L2 LINE L2 -53 3219 3083 250 336 121 40 chr1 136282996 136283145 -106381208 - L3 LINE CR1 -1260 317 157 233 303 189 19 chr1 136283614 136283878 -106380475 - L2 LINE L2 -971 2343 2035 * 262 264 22 55 chr1 136283856 136283947 -106380406 - MIR3 SINE MIR -22 186 99 227 324 105 30 chr1 136283996 136284357 -106379996 - L2 LINE L2 -1309 2005 1618 488 297 245 63 chr1 136285264 136286008 -106378345 - L3 LINE CR1 -111 1466 588 345 185 68 142 chr1 136286053 136286215 -106378138 - L2 LINE L2 -4 3309 3160 * 824 256 124 4 chr1 136286210 136286444 -106377909 - MIR SINE MIR 0 262 1 238 290 19 20 chr1 136286504 136286648 -106377705 - L2 LINE L2 -276 3037 2791 354 308 84 21 chr1 136286652 136286795 -106377558 - L3 LINE CR1 -1023 554 403 1749 179 0 0 chr1 136286853 136287150 -106377203 - AluJb SINE Alu -5 307 11 216 213 43 0 chr1 136287198 136287245 -106377108 + MIR SINE MIR 81 129 -79 290 318 66 40 chr1 136288105 136288303 -106376050 - MIR SINE MIR -40 222 20 552 275 30 55 chr1 136288507 136288707 -106375646 - MIR SINE MIR -50 212 18 517 275 9 8 chr1 136289688 136289832 -106374521 - MIR SINE MIR -57 151 41 340 278 113 20 chr1 136289989 136290140 -106374213 - MIR SINE MIR -50 212 48 303 326 22 0 chr1 136290254 136290343 -106374010 - L2 LINE L2 0 3272 3182 558 241 96 30 chr1 136290666 136290832 -106373521 - L2 LINE L2 -6 3307 3131 1839 117 127 3 chr1 136290861 136291177 -106373176 - MLT1B LTR MaLR 0 390 36 1048 206 20 15 chr1 136291165 136291369 -106372984 - MER6B DNA MER2_type -5 205 1 * 432 117 0 0 chr1 136291369 136291428 -106372925 - MLT1B LTR MaLR -331 59 1 2064 244 73 55 chr1 136291462 136291648 -106372705 - L2 LINE L2 -252 3061 2880 1655 156 3 26 chr1 136291648 136291768 -106372585 + L1MA7 LINE L1 5990 6111 -180 917 254 61 55 chr1 136291768 136292130 -106372223 - MLT1A1 LTR MaLR 0 365 2 1655 156 3 26 chr1 136292130 136292317 -106372036 + L1MA7 LINE L1 6111 6290 -1 2064 244 73 55 chr1 136292317 136292977 -106371376 - L2 LINE L2 -433 2880 2203 1025 115 0 0 chr1 136292983 136293131 -106371222 - AluSp/q SINE Alu -12 301 154 232 39 0 0 chr1 136293156 136293182 -106371171 - Alu SINE Alu -119 184 159 48 0 0 0 chr1 136293196 136293244 -106371109 + AT_rich Low_complexity Low_complexity 1 48 0 1020 46 0 99 chr1 136293244 136293395 -106370958 - AluSq/x SINE Alu -176 136 1 1853 245 188 31 chr1 136293397 136294172 -106370181 - L2 LINE L2 -1116 2198 1302 514 268 160 56 chr1 136294177 136294464 -106369889 - L2 LINE L2 -787 2527 2211 189 255 51 51 chr1 136294813 136294911 -106369442 + L2 LINE L2 2962 3059 -213 356 234 241 21 chr1 136297214 136297359 -106366994 - MER5A DNA MER1_type 0 189 13 2102 110 3 0 chr1 136297458 136297749 -106366604 - AluSc SINE Alu -17 292 1 242 276 17 0 chr1 136298794 136298852 -106365501 - MLT1L LTR MaLR -203 412 354 246 226 0 48 chr1 136299020 136299082 -106365271 - MLT1L LTR MaLR -414 201 143 802 219 65 0 chr1 136299333 136299502 -106364851 + MER58A DNA MER1_type 10 189 -35 405 326 37 12 chr1 136299932 136300105 -106364248 + MIR SINE MIR 7 149 -59 2413 62 0 3 chr1 136300830 136301138 -106363215 - AluY SINE Alu -4 307 1 2308 68 0 3 chr1 136301149 136301444 -106362909 - AluY SINE Alu -17 294 1 2028 131 0 0 chr1 136301455 136301746 -106362607 - AluSg SINE Alu -19 291 1 309 273 53 13 chr1 136302064 136302214 -106362139 + MER103 DNA DNA 3 158 -8 266 266 55 37 chr1 136302339 136302448 -106361905 + L2 LINE L2 2454 2564 -750 462 258 81 0 chr1 136302735 136302859 -106361494 - MIR SINE MIR -71 191 58 301 283 138 20 chr1 136304495 136304647 -106359706 + MIR3 SINE MIR 13 182 -26 1044 264 28 12 chr1 136304861 136305088 -106359265 + MIR SINE MIR 1 234 -28 1155 199 98 43 chr1 136305088 136305414 -106358939 - MER2 DNA MER2_type 0 344 1 1044 264 28 12 chr1 136305414 136305436 -106358917 + MIR SINE MIR 234 254 -8 2254 92 7 0 chr1 136305735 136306038 -106358315 - AluSg SINE Alu -5 305 1 609 111 52 52 chr1 136309074 136309246 -106355107 - L1MA7 LINE L1 0 6291 6120 1168 157 15 0 chr1 136309258 136309456 -106354897 + Tigger1 DNA MER2_type 26 226 -2192 1025 182 8 64 chr1 136309456 136309692 -106354661 - AluJb SINE Alu -15 297 75 3034 132 11 0 chr1 136309693 136310140 -106354213 + Tigger1 DNA MER2_type 223 674 -1744 * 9574 108 33 4 chr1 136310137 136311547 -106352806 + Tigger1 DNA MER2_type 969 2418 0 1121 152 0 34 chr1 136311549 136311753 -106352600 + L1MA7 LINE L1 5924 6120 -171 932 133 0 30 chr1 136311850 136311985 -106352368 + FLAM_C SINE Alu 1 131 -2 275 344 177 29 chr1 136312593 136312971 -106351382 + L2 LINE L2 2811 3244 -28 204 308 144 27 chr1 136313865 136314011 -106350342 + L2 LINE L2 3076 3238 -34 236 351 53 53 chr1 136314829 136314960 -106349393 + MER5B DNA MER1_type 12 142 -36 579 191 9 0 chr1 136315009 136315114 -106349239 + MER5B DNA MER1_type 73 178 0 2338 97 0 0 chr1 136315541 136315840 -106348513 - AluSg SINE Alu -11 299 1 2241 100 7 3 chr1 136316035 136316325 -106348028 + AluSc SINE Alu 1 291 -18 180 0 0 0 chr1 136316741 136316761 -106347592 + (TA)n Simple_repeat Simple_repeat 2 21 0 276 212 45 0 chr1 136317808 136317874 -106346479 + MER5A DNA MER1_type 44 112 -77 2359 54 0 54 chr1 136319449 136319764 -106344589 + AluY SINE Alu 6 303 -8 430 200 168 52 chr1 136320132 136320216 -106344137 + MLT1B LTR MaLR 1 74 -316 3936 140 22 22 chr1 136320216 136320851 -106343502 + MER41B LTR ERV1 1 635 0 430 200 168 52 chr1 136320851 136320921 -106343432 + MLT1B LTR MaLR 74 173 -217 238 175 0 0 chr1 136320891 136320931 -106343422 + MSTC LTR MaLR 177 216 -212 * 914 92 133 96 chr1 136320942 136321160 -106343193 + THE1C LTR MaLR 150 375 0 2354 97 3 0 chr1 136321393 136321693 -106342660 + AluSx SINE Alu 1 301 -11 222 37 0 0 chr1 136321693 136321720 -106342633 + (GA)n Simple_repeat Simple_repeat 2 28 0 325 280 0 0 chr1 136321946 136322021 -106342332 + L2 LINE L2 3234 3308 -5 199 259 69 0 chr1 136322281 136322339 -106342014 - L2 LINE L2 -644 2670 2609 651 307 130 51 chr1 136322339 136323238 -106341115 - L2 LINE L2 -1109 2205 1236 404 337 65 0 chr1 136323245 136323414 -106340939 - MER5A DNA MER1_type -6 183 4 2450 137 71 17 chr1 136323478 136323888 -106340465 + MSTB1 LTR MaLR 1 432 0 476 290 101 55 chr1 136324177 136324415 -106339938 - MIR SINE MIR 0 262 14 526 210 28 56 chr1 136324603 136324746 -106339607 - MLT1K LTR MaLR -2 586 448 332 338 28 28 chr1 136324979 136325124 -106339229 - MLT1K LTR MaLR -439 149 5 1488 223 13 79 chr1 136325793 136326126 -106338227 - MLT1A1 LTR MaLR 0 365 60 5107 46 5 5 chr1 136326126 136326717 -106337636 - LTR10C LTR ERV1 0 591 1 1488 223 13 79 chr1 136326717 136326774 -106337579 - MLT1A1 LTR MaLR -305 60 1 1996 168 99 8 chr1 136326881 136327244 -106337109 - MSTD LTR MaLR 0 396 1 25 31 0 0 chr1 136327386 136327418 -106336935 + AT_rich Low_complexity Low_complexity 1 32 0 2587 59 0 3 chr1 136327440 136327747 -106336606 + AluY SINE Alu 1 306 -5 2040 173 11 6 chr1 136327812 136328170 -106336183 + L1MA8 LINE L1 4 363 -6667 5155 122 244 102 chr1 136328178 136329663 -106334690 - pTR5 LTR ERV1 0 2438 743 16398 187 62 32 chr1 136329667 136333809 -106330544 + L1MA8 LINE L1 448 4464 -2787 1826 214 22 8 chr1 136333809 136334169 -106330184 + MLT1A1 LTR MaLR 1 365 0 16398 187 62 32 chr1 136334169 136334345 -106330008 + L1MA8 LINE L1 4464 4633 -2618 1939 115 0 4 chr1 136334345 136334614 -106329739 + AluSx SINE Alu 35 302 -10 16398 187 62 32 chr1 136334614 136335372 -106328981 + L1MA8 LINE L1 4633 5367 -1884 3027 115 4 49 chr1 136335372 136335824 -106328529 + MSTB1 LTR MaLR 1 432 0 16398 187 62 32 chr1 136335824 136336729 -106327624 + L1MA8 LINE L1 5367 6243 -1008 2199 119 3 0 chr1 136336729 136337032 -106327321 + AluSg SINE Alu 1 304 -6 16398 187 62 32 chr1 136337032 136337590 -106326763 + L1MA8 LINE L1 6243 6903 -348 1771 139 65 10 chr1 136337590 136337884 -106326469 + 7SLRNA srpRNA srpRNA 11 320 0 16398 187 62 32 chr1 136337884 136338244 -106326109 + L1MA8 LINE L1 6903 7251 0 276 170 0 0 chr1 136339427 136339480 -106324873 + CT-rich Low_complexity Low_complexity 3 55 0 2219 113 3 0 chr1 136339624 136339924 -106324429 + AluSc SINE Alu 1 301 -8 338 366 57 40 chr1 136340363 136340590 -106323763 - L2 LINE L2 -8 3264 3034 2413 150 50 123 chr1 136340622 136341278 -106323075 - L1MB7 LINE L1 -21 6163 5553 1639 201 125 3 chr1 136342120 136342473 -106321880 - MSTD LTR MaLR 0 396 1 212 167 0 0 chr1 136342545 136342581 -106321772 + MIR SINE MIR 217 252 -10 1396 308 25 70 chr1 136342900 136343369 -106320984 - MLT1K LTR MaLR 0 588 150 2126 104 25 0 chr1 136343369 136343648 -106320705 - AluSg SINE Alu -24 286 1 1396 308 25 70 chr1 136343648 136343779 -106320574 - MLT1K LTR MaLR -438 150 15 288 372 0 33 chr1 136343800 136343921 -106320432 - MIR SINE MIR -62 146 30 4809 163 47 24 chr1 136344011 136345077 -106319276 - L1MB3 LINE L1 -7 6176 5087 504 276 191 9 chr1 136345801 136346011 -106318342 + LTR16A LTR ERVL 203 450 0 451 277 16 33 chr1 136346197 136346381 -106317972 - L1ME LINE L1 -332 5789 5609 2611 65 0 0 chr1 136346381 136346687 -106317666 - AluY SINE Alu -5 306 1 1860 165 7 3 chr1 136346697 136346994 -106317359 - AluJo SINE Alu -10 302 5 426 308 50 13 chr1 136347660 136347819 -106316534 - MIR SINE MIR -96 166 2 183 311 106 25 chr1 136349415 136349576 -106314777 + L2 LINE L2 2570 2743 -571 757 291 18 22 chr1 136349593 136349816 -106314537 + Charlie8 DNA MER1_type 25 246 -2171 767 150 0 23 chr1 136349820 136349953 -106314400 - L1M4 LINE L1 -743 5403 5274 338 198 22 44 chr1 136349988 136350079 -106314274 + LTR41 LTR ERVL 684 772 -1 276 343 49 10 chr1 136350156 136350258 -106314095 + MIR SINE MIR 37 142 -66 2223 125 0 3 chr1 136353022 136353326 -106311027 + AluSx SINE Alu 2 304 -8 36749 79 7 14 chr1 136353335 136357748 -106306605 - L1PA6 LINE L1 -3 6151 1786 3443 190 21 77 chr1 136357748 136358773 -106305580 - LTR5 LTR ERVK -1 968 1 36749 79 7 14 chr1 136358773 136360192 -106304161 - L1PA6 LINE L1 -4368 1786 359 1173 145 15 35 chr1 136360196 136360396 -106303957 + AluJo SINE Alu 87 282 -30 229 303 0 22 chr1 136360428 136360517 -106303836 + MIR SINE MIR 173 259 -3 243 190 0 0 chr1 136360857 136360915 -106303438 + GA-rich Low_complexity Low_complexity 1 58 0 2266 75 0 0 chr1 136361565 136361843 -106302510 - L1PA5 LINE L1 -4 6150 5873 1735 238 69 10 chr1 136362527 136363049 -106301304 + L2 LINE L2 1385 1937 -1377 1303 249 40 52 chr1 136363066 136363348 -106301005 + L2 LINE L2 2817 3101 -212 2499 168 121 12 chr1 136363348 136363837 -106300516 - MLT1F LTR MaLR 0 542 1 1303 249 40 52 chr1 136363837 136363905 -106300448 + L2 LINE L2 3101 3168 -145 2796 122 131 82 chr1 136363905 136364538 -106299815 - MER4A LTR ERV1 0 664 1 1303 249 40 52 chr1 136364538 136364560 -106299793 + L2 LINE L2 3168 3189 -124 4230 104 69 0 chr1 136364560 136365154 -106299199 - MER41B LTR ERV1 0 635 1 1303 249 40 52 chr1 136365154 136365280 -106299073 + L2 LINE L2 3189 3311 -2 2949 152 107 12 chr1 136365483 136366044 -106298309 + LTR18B LTR ERVL 1 614 0 1253 217 0 0 chr1 136366057 136366287 -106298066 + HERVL18 LTR ERVL 68 297 -5750 950 182 17 23 chr1 136366281 136366457 -106297896 + HERVL18 LTR ERVL 492 666 -5381 * 287 119 0 0 chr1 136366452 136366494 -106297859 + HERVL18 LTR ERVL 917 958 -5089 * 508 270 32 24 chr1 136366484 136366610 -106297743 + HERVL18 LTR ERVL 1383 1509 -4538 313 161 0 18 chr1 136366592 136366648 -106297705 + HERVL18 LTR ERVL 3030 3084 -2963 * 3721 137 17 4 chr1 136366648 136367181 -106297172 + HERVL18 LTR ERVL 2952 3491 -2556 2951 155 117 11 chr1 136367462 136368017 -106296336 + LTR18B LTR ERVL 1 614 0 4546 114 3 2 chr1 136368151 136368785 -106295568 + MER41B LTR ERV1 1 635 0 184 303 56 11 chr1 136369838 136369927 -106294426 - L2 LINE L2 -1333 1981 1889 253 261 15 0 chr1 136370110 136370175 -106294178 + MIR SINE MIR 167 232 -30 244 325 67 33 chr1 136371097 136371217 -106293136 - L2 LINE L2 -17 3255 3132 1057 206 26 13 chr1 136371242 136371470 -106292883 + MIR SINE MIR 11 241 -21 2518 180 23 21 chr1 136371472 136371955 -106292398 + LTR42 LTR ERVL 1 484 -11 224 271 94 0 chr1 136372585 136372670 -106291683 + MIR3 SINE MIR 68 160 -48 26 50 0 0 chr1 136372771 136372811 -106291542 + AT_rich Low_complexity Low_complexity 1 40 0 2192 187 43 71 chr1 136372811 136373530 -106290823 - L1MA9 LINE L1 -25 6275 5635 196 323 0 0 chr1 136373771 136373836 -106290517 + MIR3 SINE MIR 142 206 -2 961 138 0 0 chr1 136374056 136374186 -106290167 + FLAM_C SINE Alu 1 130 -13 294 355 93 36 chr1 136374778 136375026 -106289327 - L2 LINE L2 -5 3267 3006 22 0 0 0 chr1 136375201 136375223 -106289130 + AT_rich Low_complexity Low_complexity 1 22 0 223 191 0 0 chr1 136376064 136376106 -106288247 - L2 LINE L2 -8 3305 3264 12925 166 30 16 chr1 136376976 136380449 -106283904 - L1MA4A LINE L1 -5 6988 3497 669 110 0 0 chr1 136380450 136380541 -106283812 - AluS SINE Alu -220 92 2 741 87 0 0 chr1 136380543 136380647 -106283706 - L1P LINE L1 -734 5427 5324 1888 78 23 0 chr1 136380747 136381005 -106283348 + L1PA13 LINE L1 5896 6159 -4 1689 208 32 20 chr1 136381007 136381343 -106283010 - L1MA4A LINE L1 -3493 3355 3025 7726 76 11 1 chr1 136381343 136382302 -106282051 - LTR5 LTR ERVK 0 969 1 1689 208 32 20 chr1 136382302 136382718 -106281635 - L1MA4A LINE L1 -3823 3025 2593 321 26 0 0 chr1 136383504 136383542 -106280811 + (TA)n Simple_repeat Simple_repeat 2 39 0 886 132 0 0 chr1 136383543 136383672 -106280681 - FLAM_C SINE Alu 0 133 5 1903 77 0 0 chr1 136383939 136384185 -106280168 - L1PA7 LINE L1 0 6154 5909 742 230 10 39 chr1 136384258 136384462 -106279891 + MIR SINE MIR 55 252 -10 254 244 11 22 chr1 136385384 136385474 -106278879 - MIR SINE MIR -70 192 104 266 310 97 7 chr1 136385484 136385629 -106278724 + MIR3 SINE MIR 43 200 -8 198 175 32 63 chr1 136386181 136386244 -106278109 + L2 LINE L2 3234 3294 -19 234 0 0 0 chr1 136388943 136388969 -106275384 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 441 245 14 75 chr1 136388969 136389111 -106275242 - L2 LINE L2 -13 3300 3168 596 267 161 37 chr1 136389420 136389742 -106274611 + MLT1J2 LTR MaLR 65 426 -24 1367 168 153 0 chr1 136389813 136390075 -106274278 + AluJo SINE Alu 1 302 0 2401 292 43 12 chr1 136390076 136390873 -106273480 - HERVL LTR ERVL -1263 4501 3681 963 297 81 32 chr1 136390937 136391252 -106273101 + ERVL LTR ERVL 1457 1755 -3938 2162 114 10 3 chr1 136391252 136391549 -106272804 + AluSg SINE Alu 2 300 -10 963 297 81 32 chr1 136391549 136391770 -106272583 + ERVL LTR ERVL 1755 2061 -3632 914 285 59 7 chr1 136391889 136392194 -106272159 + ERVL LTR ERVL 2083 2403 -3361 361 218 11 23 chr1 136392216 136392303 -106272050 - HERVL LTR ERVL -4362 1292 1207 21 36 0 0 chr1 136392362 136392390 -106271963 + AT_rich Low_complexity Low_complexity 1 28 0 504 269 93 53 chr1 136392436 136392983 -106271370 - L1MEd LINE L1 -4881 1238 670 * 535 188 78 0 chr1 136392980 136393108 -106271245 - L1MB8 LINE L1 -1 6177 6040 2496 92 21 34 chr1 136393682 136394062 -106270291 - THE1C LTR MaLR 0 375 1 270 249 152 14 chr1 136394473 136394596 -106269757 + MIR SINE MIR 20 160 -86 276 193 57 80 chr1 136394644 136394732 -106269621 + MIR SINE MIR 18 103 -105 239 313 42 10 chr1 136394737 136394833 -106269520 + L3 LINE CR1 1333 1431 -146 511 239 116 7 chr1 136394840 136394995 -106269358 - MIR SINE MIR -4 258 87 256 342 27 32 chr1 136396580 136396767 -106267586 - LTR16C LTR ERVL 0 491 306 196 313 12 12 chr1 136397122 136397202 -106267151 + L2 LINE L2 3193 3272 0 282 257 88 29 chr1 136398298 136398341 -106266012 - L1ME4a LINE L1 -125 5996 5957 723 175 0 8 chr1 136398341 136398461 -106265892 - FLAM_A SINE Alu -10 123 5 282 257 88 29 chr1 136398461 136398553 -106265800 - L1ME4a LINE L1 -164 5957 5853 505 235 148 6 chr1 136398570 136398753 -106265600 + MIR SINE MIR 51 259 -3 599 293 81 27 chr1 136400172 136400353 -106264000 + L2 LINE L2 2955 3125 -188 1647 166 68 0 chr1 136400353 136400631 -106263722 + AluSx SINE Alu 3 299 -13 599 293 81 27 chr1 136400631 136400784 -106263569 + L2 LINE L2 3125 3307 -6 210 203 51 17 chr1 136401840 136401899 -106262454 + MIR SINE MIR 109 169 -93 219 69 0 0 chr1 136401988 136402017 -106262336 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 329 235 86 103 chr1 136402402 136402645 -106261708 - MIR SINE MIR 0 262 24 444 294 45 6 chr1 136406018 136406195 -106258158 - MER5A DNA MER1_type -3 186 3 304 213 149 0 chr1 136406231 136406325 -106258028 + MIR SINE MIR 84 191 -71 407 283 82 22 chr1 136406357 136406541 -106257812 + L3 LINE CR1 1242 1436 -141 290 288 137 79 chr1 136406897 136407175 -106257178 + L2 LINE L2 2978 3271 -1 255 240 27 0 chr1 136407617 136407692 -106256661 + MLT1L LTR MaLR 489 565 -50 199 200 36 18 chr1 136407756 136407811 -106256542 - L3 LINE CR1 -2 1575 1520 286 273 23 23 chr1 136408330 136408418 -106255935 + GA-rich Low_complexity Low_complexity 3 90 0 415 306 153 9 chr1 136408426 136408642 -106255711 + MIR SINE MIR 16 262 0 244 320 8 23 chr1 136408675 136408803 -106255550 + GA-rich Low_complexity Low_complexity 3 128 0 330 267 17 60 chr1 136409718 136409834 -106254519 - L2 LINE L2 -4 3309 3199 2265 110 0 3 chr1 136410333 136410634 -106253719 - AluSx SINE Alu -12 300 1 2323 109 3 0 chr1 136411066 136411369 -106252984 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr1 136411623 136411644 -106252709 + AT_rich Low_complexity Low_complexity 1 21 0 241 347 141 0 chr1 136411776 136411897 -106252456 - MIR SINE MIR -77 185 48 203 255 0 0 chr1 136412516 136412563 -106251790 - L3 LINE CR1 -237 1340 1294 192 267 83 0 chr1 136412692 136412752 -106251601 + L2 LINE L2 3141 3205 -67 497 256 164 5 chr1 136413807 136413911 -106250442 - MIR SINE MIR -6 256 170 1900 160 0 35 chr1 136413911 136414223 -106250130 - AluJb SINE Alu -11 301 1 497 256 164 5 chr1 136414223 136414337 -106250016 - MIR SINE MIR -92 170 3 23 0 0 0 chr1 136414769 136414792 -106249561 + AT_rich Low_complexity Low_complexity 1 23 0 234 340 29 10 chr1 136415094 136415197 -106249156 - MIR3 SINE MIR -3 205 101 522 266 113 15 chr1 136415198 136415424 -106248929 - MIR SINE MIR 0 262 17 376 305 155 5 chr1 136415880 136416067 -106248286 + MIR SINE MIR 42 256 -6 250 306 93 9 chr1 136416730 136416838 -106247515 + MIR3 SINE MIR 54 170 -38 237 303 0 53 chr1 136416858 136416934 -106247419 - MIR SINE MIR -104 104 33 460 183 43 9 chr1 136417045 136417160 -106247193 - MIR SINE MIR -66 196 78 191 341 24 0 chr1 136417930 136418015 -106246338 + MIR SINE MIR 67 153 -55 337 287 8 16 chr1 136418905 136419034 -106245319 - MIR3 SINE MIR 0 208 81 189 0 0 0 chr1 136419315 136419336 -106245017 + (A)n Simple_repeat Simple_repeat 1 21 0 236 263 0 50 chr1 136419921 136420001 -106244352 + CT-rich Low_complexity Low_complexity 4 79 0 415 256 29 111 chr1 136420580 136420787 -106243566 - MIR SINE MIR -20 242 53 236 286 136 41 chr1 136421082 136421229 -106243124 - MIR3 SINE MIR -12 196 36 845 165 99 0 chr1 136421467 136421649 -106242704 + MIR SINE MIR 21 220 -42 867 70 0 0 chr1 136421697 136421812 -106242541 + (CAATG)n Simple_repeat Simple_repeat 3 117 0 212 286 20 0 chr1 136422838 136422887 -106241466 - L2 LINE L2 -12 3260 3211 25 0 0 0 chr1 136423236 136423261 -106241092 + AT_rich Low_complexity Low_complexity 1 25 0 2070 136 11 48 chr1 136423261 136423636 -106240717 - L1PA16 LINE L1 -1 6165 5805 443 215 28 19 chr1 136423678 136423785 -106240568 - MIR SINE MIR -80 182 75 1907 109 0 0 chr1 136424748 136424996 -106239357 - AluSg SINE Alu -7 303 56 2481 109 16 21 chr1 136425511 136425888 -106238465 + THE1C LTR MaLR 1 375 0 250 303 254 6 chr1 136426087 136426252 -106238101 + MIR SINE MIR 41 246 -16 282 209 35 0 chr1 136426261 136426347 -106238006 + (TA)n Simple_repeat Simple_repeat 1 89 0 244 250 62 0 chr1 136426492 136426572 -106237781 + MER91B DNA MER1_type 1 85 -105 205 289 207 25 chr1 136426682 136426803 -106237550 - L2 LINE L2 -2 3270 3128 248 306 24 12 chr1 136427310 136427402 -106236951 + MIR SINE MIR 20 111 -105 227 278 90 5 chr1 136428280 136428385 -106235968 - MIR SINE MIR 0 208 86 601 250 120 0 chr1 136432273 136432465 -106231888 - MIR SINE MIR -34 228 14 236 263 23 68 chr1 136432542 136432675 -106231678 - L2 LINE L2 -214 3058 2932 2308 178 25 16 chr1 136432703 136433146 -106231207 - MER66A LTR ERV1 -3 475 29 245 231 0 15 chr1 136433665 136433730 -106230623 - LTR67 LTR ERVL -4 553 490 206 303 15 0 chr1 136433733 136433799 -106230554 + GA-rich Low_complexity Low_complexity 3 69 0 314 276 0 0 chr1 136434226 136434302 -106230051 + MIR SINE MIR 69 144 -118 230 293 122 14 chr1 136434882 136435029 -106229324 + L3 LINE CR1 1193 1355 -222 820 225 55 5 chr1 136435042 136435242 -106229111 - MIR SINE MIR -25 237 28 223 274 197 17 chr1 136435253 136435370 -106228983 + L3 LINE CR1 1356 1493 -84 358 270 9 17 chr1 136435429 136435544 -106228809 + GA-rich Low_complexity Low_complexity 2 115 0 349 191 199 37 chr1 136435785 136435921 -106228432 - MIR SINE MIR 0 262 105 1898 149 7 27 chr1 136436193 136436494 -106227859 + AluJb SINE Alu 1 295 -17 497 266 25 84 chr1 136436791 136437028 -106227325 + MIR SINE MIR 32 254 -8 386 241 37 9 chr1 136437449 136437557 -106226796 + MIR SINE MIR 108 218 -44 2324 169 19 37 chr1 136437723 136437924 -106226429 + MSTB LTR MaLR 1 204 -222 2153 134 0 0 chr1 136437924 136438216 -106226137 + AluSg SINE Alu 1 292 -18 2324 169 19 37 chr1 136438216 136438446 -106225907 + MSTB LTR MaLR 204 424 -2 201 286 18 0 chr1 136438519 136438575 -106225778 + L2 LINE L2 2986 3042 -230 1200 145 106 28 chr1 136438880 136439135 -106225218 - ORSL DNA AcHobo 0 275 1 383 289 105 0 chr1 136439450 136439602 -106224751 - MIR SINE MIR -75 187 20 547 282 87 5 chr1 136440673 136440868 -106223485 + MIR SINE MIR 4 214 -48 322 205 34 81 chr1 136441894 136442075 -106222278 - HAL1b LINE L1 0 6121 1187 369 340 26 0 chr1 136442615 136442768 -106221585 - MIR3 SINE MIR -15 193 37 2356 98 0 25 chr1 136442911 136443229 -106221124 + AluY SINE Alu 1 310 -1 773 258 14 14 chr1 136443426 136443639 -106220714 - MIR SINE MIR -49 213 1 242 182 36 91 chr1 136443870 136443980 -106220373 - L1MC5 LINE L1 -26 7935 7832 313 231 91 28 chr1 136443996 136444139 -106220214 + Charlie7 DNA MER1_type 2413 2564 -48 524 237 40 13 chr1 136444209 136444361 -106219992 + MIR SINE MIR 37 192 -70 214 268 0 0 chr1 136444658 136444714 -106219639 + T-rich Low_complexity Low_complexity 3 58 0 241 219 209 19 chr1 136445960 136446065 -106218288 - L2 LINE L2 -10 3262 3138 269 317 30 30 chr1 136446726 136446827 -106217526 - MER91B DNA MER1_type 0 190 90 480 187 22 67 chr1 136446845 136446979 -106217374 - MER91B DNA MER1_type -61 129 2 856 215 134 21 chr1 136447251 136447535 -106216818 + L2 LINE L2 2998 3313 0 279 333 58 14 chr1 136447791 136447929 -106216424 - MIR SINE MIR -71 191 48 220 213 8 180 chr1 136449306 136449372 -106214981 - L2 LINE L2 -33 3239 3202 2322 83 6 22 chr1 136449372 136449685 -106214668 + AluSp SINE Alu 1 308 -5 220 213 8 180 chr1 136449685 136449740 -106214613 - L2 LINE L2 -70 3202 3139 2227 112 3 3 chr1 136449862 136450165 -106214188 + AluSp SINE Alu 1 303 -10 367 274 57 0 chr1 136450972 136451096 -106213257 + MIR SINE MIR 34 164 -98 252 211 0 0 chr1 136451123 136451175 -106213178 - L2 LINE L2 0 3272 3221 901 241 73 9 chr1 136451194 136451426 -106212927 + MIR SINE MIR 16 262 0 2097 255 143 18 chr1 136451446 136452322 -106212031 - L2 LINE L2 -106 3207 2183 1974 127 0 28 chr1 136452322 136452644 -106211709 + AluSx SINE Alu 1 314 0 2097 255 143 18 chr1 136452644 136452779 -106211574 - L2 LINE L2 -1130 2183 2066 224 235 12 71 chr1 136452811 136452896 -106211457 - L2 LINE L2 -1341 1973 1894 23 0 0 0 chr1 136453378 136453401 -106210952 + AT_rich Low_complexity Low_complexity 1 23 0 315 320 19 32 chr1 136453697 136453853 -106210500 + MIR SINE MIR 103 256 -6 8945 112 13 1 chr1 136454406 136455673 -106208680 - HSMAR1 DNA Mariner -4 1283 1 227 196 22 0 chr1 136455746 136455792 -106208561 + L2 LINE L2 3209 3255 -17 232 246 18 0 chr1 136456006 136456063 -106208290 + (GAGTG)n Simple_repeat Simple_repeat 2 59 0 210 329 183 18 chr1 136456213 136456377 -106207976 + MIR SINE MIR 37 227 -35 563 271 55 87 chr1 136456378 136456688 -106207665 - MLT1I LTR MaLR -11 398 99 1430 265 47 26 chr1 136457026 136457494 -106206859 + L2 LINE L2 2836 3313 0 199 285 22 88 chr1 136457514 136457651 -106206702 - MIR SINE MIR -55 207 80 555 249 79 12 chr1 136458734 136458899 -106205454 - MER112 DNA MER1_type 0 260 85 261 0 0 0 chr1 136458900 136458929 -106205424 + (TG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr1 136459762 136459784 -106204569 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 136460249 136460270 -106204083 + AT_rich Low_complexity Low_complexity 1 21 0 283 310 35 17 chr1 136460597 136460713 -106203640 + MIR3 SINE MIR 47 164 -44 438 129 0 14 chr1 136461213 136461283 -106203070 + MER34C LTR ERV1 5 73 -512 3263 141 53 14 chr1 136461283 136461844 -106202509 + MER34C LTR ERV1 3 585 0 1374 211 102 3 chr1 136461847 136462132 -106202221 - MER45B DNA AcHobo -727 313 1 254 178 123 14 chr1 136462168 136462241 -106202112 + MLT1L LTR MaLR 324 404 -211 2076 145 16 89 chr1 136462276 136462703 -106201650 - MSTD LTR MaLR 0 396 1 7397 213 21 58 chr1 136462703 136463907 -106200446 - MSTD-int LTR MaLR 0 1735 617 2543 75 0 0 chr1 136463907 136464213 -106200140 + AluY SINE Alu 2 307 -4 7397 213 21 58 chr1 136464213 136464808 -106199545 - MSTD-int LTR MaLR -1118 617 2 1306 178 55 15 chr1 136464810 136465148 -106199205 - MSTD LTR MaLR 0 365 1 294 196 0 0 chr1 136465197 136465248 -106199105 + MLT1L LTR MaLR 559 609 -6 316 270 0 14 chr1 136465257 136465331 -106199022 - MER5A DNA MER1_type -110 79 7 258 116 0 0 chr1 136466026 136466069 -106198284 + (GA)n Simple_repeat Simple_repeat 2 44 0 1448 175 8 0 chr1 136466197 136466431 -106197922 + MER46A DNA MER2_type 1 236 0 203 233 14 55 chr1 136466618 136466691 -106197662 + L2 LINE L2 3136 3205 -67 359 277 51 0 chr1 136467905 136468042 -106196311 + MIR SINE MIR 114 257 -5 560 190 159 18 chr1 136469572 136469735 -106194618 + MIR SINE MIR 77 262 0 2113 119 16 7 chr1 136470251 136470554 -106193799 - AluSx SINE Alu -6 306 1 1953 169 49 0 chr1 136470671 136471019 -106193334 - MLT1A1 LTR MaLR 0 365 1 363 323 19 31 chr1 136471789 136471950 -106192403 + L2 LINE L2 2925 3083 -189 22 70 0 0 chr1 136471990 136472033 -106192320 + AT_rich Low_complexity Low_complexity 1 43 0 318 254 120 21 chr1 136472593 136472735 -106191618 - L3 LINE CR1 -280 1297 1142 36 104 0 0 chr1 136472748 136472882 -106191471 + AT_rich Low_complexity Low_complexity 1 134 0 14886 195 28 31 chr1 136472882 136474603 -106189750 - L1PB1 LINE L1 -2 6865 5140 225 0 0 0 chr1 136474603 136474628 -106189725 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 14886 195 28 31 chr1 136474628 136475301 -106189052 - L1PB1 LINE L1 -1727 5140 4466 2325 76 13 13 chr1 136475301 136475603 -106188750 + AluY SINE Alu 1 302 -9 14886 195 28 31 chr1 136475603 136476356 -106187997 - L1PB1 LINE L1 -2401 4466 3712 2385 86 0 3 chr1 136476356 136476647 -106187706 - AluY SINE Alu -21 290 1 14886 195 28 31 chr1 136476647 136477741 -106186612 - L1PB1 LINE L1 -3155 3712 2619 2373 78 10 0 chr1 136477741 136478036 -106186317 - AluY SINE Alu -11 300 3 14886 195 28 31 chr1 136478036 136478456 -106185897 - L1PB1 LINE L1 -4248 2619 2199 276 100 0 0 chr1 136479124 136479164 -106185189 + (T)n Simple_repeat Simple_repeat 1 40 0 247 298 62 34 chr1 136479877 136480046 -106184307 - MIR SINE MIR -62 146 19 723 225 132 102 chr1 136481773 136481900 -106182453 + MER102b DNA MER1_type 7 129 -1299 1882 148 18 0 chr1 136481900 136482184 -106182169 + AluJb SINE Alu 1 289 -23 723 225 132 102 chr1 136482184 136482381 -106181972 + MER102b DNA MER1_type 129 341 0 1908 183 49 33 chr1 136485306 136485732 -106178621 + MER63B DNA MER1_type 4 436 0 661 317 102 0 chr1 136486569 136486705 -106177648 - L3 LINE CR1 -797 780 659 2913 64 106 0 chr1 136486705 136487110 -106177243 + LTR7 LTR ERV1 1 448 -2 661 317 102 0 chr1 136487110 136487219 -106177134 - L3 LINE CR1 -918 659 510 282 319 0 0 chr1 136487255 136487327 -106177026 - L3 LINE CR1 -1182 395 324 268 310 23 0 chr1 136487953 136488040 -106176313 - LTR67 LTR ERVL 0 557 469 1325 201 28 25 chr1 136488591 136488992 -106175361 - LTR47A LTR ERVL 0 452 1 897 225 121 33 chr1 136489056 136489363 -106174990 - L1ME3A LINE L1 -12 6158 5825 218 206 0 32 chr1 136490533 136490596 -106173757 + GA-rich Low_complexity Low_complexity 3 63 0 809 212 42 0 chr1 136491202 136491367 -106172986 + FRAM SINE Alu 1 171 -5 361 345 78 12 chr1 136491449 136491707 -106172646 - L2 LINE L2 -467 2847 2573 434 194 0 50 chr1 136491721 136492296 -106172057 + (TA)n Simple_repeat Simple_repeat 1 546 0 674 275 14 0 chr1 136492296 136492438 -106171915 - FRAM SINE Alu -19 147 4 224 329 82 17 chr1 136492471 136492702 -106171651 - L2 LINE L2 -788 2526 2281 729 259 45 10 chr1 136492807 136493008 -106171345 - LTR8 LTR ERV1 -483 208 1 2144 133 7 0 chr1 136493050 136493359 -106170994 - AluSx SINE Alu -1 311 1 1869 221 61 5 chr1 136493361 136493769 -106170584 + MER21-int LTR ERV1 2001 2431 -1760 1990 138 3 0 chr1 136495262 136495565 -106168788 - AluSx SINE Alu 0 304 1 27 29 0 0 chr1 136495865 136495899 -106168454 + AT_rich Low_complexity Low_complexity 1 34 0 1737 157 64 80 chr1 136495921 136496360 -106167993 - MSTB1 LTR MaLR 0 432 1 1912 140 86 82 chr1 136496830 136497091 -106167262 + MLT1C LTR MaLR 1 266 -201 2045 125 34 7 chr1 136497091 136497387 -106166966 - AluSx SINE Alu -8 304 1 1912 140 86 82 chr1 136497387 136497590 -106166763 + MLT1C LTR MaLR 266 467 0 2291 132 187 79 chr1 136497880 136498410 -106165943 + LTR18B LTR ERVL 1 587 -27 201 268 73 24 chr1 136498835 136498917 -106165436 + L2 LINE L2 3170 3255 -17 400 248 30 0 chr1 136499604 136499705 -106164648 - MIR SINE MIR -96 166 63 429 281 37 55 chr1 136499840 136500057 -106164296 + MIR SINE MIR 2 214 -48 2566 68 7 0 chr1 136500059 136500366 -106163987 - AluY SINE Alu -2 309 1 195 139 0 0 chr1 136501057 136501093 -106163260 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr1 136501236 136501258 -106163095 + AT_rich Low_complexity Low_complexity 1 22 0 290 274 80 59 chr1 136501720 136501957 -106162396 + L1ME4a LINE L1 5812 6053 -68 305 329 62 0 chr1 136501958 136502119 -106162234 + L2 LINE L2 2543 2713 -601 2047 223 111 17 chr1 136502367 136502909 -106161444 - MLT1E LTR MaLR 0 593 1 230 250 18 0 chr1 136502915 136502971 -106161382 - MLT1E-int LTR MaLR -6 1365 1309 1511 181 179 136 chr1 136502971 136503072 -106161281 + MLT1B LTR MaLR 1 96 -294 2155 108 0 7 chr1 136503072 136503360 -106160993 + AluSc SINE Alu 1 286 -23 318 50 0 0 chr1 136503363 136503403 -106160950 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1511 181 179 136 chr1 136503403 136503745 -106160608 + MLT1B LTR MaLR 97 390 0 720 213 14 140 chr1 136503758 136504129 -106160224 - MLT1E-int LTR MaLR -52 1319 996 1747 221 96 17 chr1 136504378 136505080 -106159273 + L1MC4 LINE L1 6467 7112 -930 2218 104 0 0 chr1 136505080 136505360 -106158993 + AluSq SINE Alu 1 280 -33 243 0 0 0 chr1 136505364 136505391 -106158962 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1747 221 96 17 chr1 136505391 136505770 -106158583 + L1MC4 LINE L1 7114 7781 -261 687 156 9 0 chr1 136505889 136505998 -106158355 - AluJb SINE Alu -39 273 164 409 200 53 0 chr1 136506034 136506129 -106158224 + L1MC4 LINE L1 7800 7899 -143 25 51 0 0 chr1 136506175 136506214 -106158139 + AT_rich Low_complexity Low_complexity 1 39 0 468 297 16 0 chr1 136507145 136507273 -106157080 - L2 LINE L2 0 3272 3143 211 348 45 0 chr1 136507376 136507465 -106156888 + MIR SINE MIR 20 112 -150 32020 117 15 58 chr1 136507476 136513172 -106151181 + L1P3 LINE L1 12 5453 -719 3327 40 2 2 chr1 136513178 136513577 -106150776 + L1PA7 LINE L1 5254 5652 -502 4206 60 2 0 chr1 136513687 136514186 -106150167 + L1PA7 LINE L1 5654 6153 -1 275 238 8 103 chr1 136514186 136514312 -106150041 + MIR SINE MIR 99 212 -50 284 299 71 8 chr1 136514399 136514526 -106149827 + L3 LINE CR1 609 743 -834 37879 92 12 8 chr1 136514536 136520657 -106143696 + L1PA6 LINE L1 11 6154 0 283 259 59 0 chr1 136520710 136520795 -106143558 + L3 LINE CR1 792 881 -696 246 212 30 30 chr1 136521364 136521430 -106142923 + L2 LINE L2 3245 3310 -3 * 283 238 140 55 chr1 136521426 136521590 -106142763 + MIR SINE MIR 13 190 -72 407 296 73 92 chr1 136521952 136522377 -106141976 - L2 LINE L2 -8 3264 2848 1315 220 177 99 chr1 136522394 136522890 -106141463 + MLT1E LTR MaLR 5 590 -3 336 349 104 10 chr1 136523176 136523474 -106140879 - L2 LINE L2 -737 2577 2252 963 194 48 0 chr1 136523854 136524060 -106140293 + L1MB2 LINE L1 5949 6164 -7 303 303 37 18 chr1 136524235 136524344 -106140009 - MIR3 SINE MIR -96 112 2 232 279 39 39 chr1 136524432 136524536 -106139817 + L2 LINE L2 3210 3313 0 2055 209 87 18 chr1 136524666 136525399 -106138954 + L1MCa LINE L1 22 784 -5123 315 141 172 16 chr1 136525410 136525474 -106138879 + LTR32 LTR ERVL 15 88 -383 805 155 92 29 chr1 136525475 136525649 -106138704 + LTR32 LTR ERVL 285 469 -2 325 229 0 46 chr1 136525649 136525758 -106138595 + L1MCa LINE L1 805 908 -5518 6413 45 1 0 chr1 136525909 136526673 -106137680 - L1PA4 LINE L1 0 6155 5391 14296 31 2 0 chr1 136526773 136528447 -106135906 - L1PA4 LINE L1 -900 5246 3569 570 272 29 67 chr1 136528989 136529228 -106135125 - MIR SINE MIR -13 249 20 224 295 0 0 chr1 136529266 136529327 -106135026 - L2 LINE L2 -2 3311 3251 1948 122 36 16 chr1 136529352 136529656 -106134697 + AluSg SINE Alu 1 310 0 249 327 30 40 chr1 136529781 136529882 -106134471 + L2 LINE L2 3182 3281 -32 1549 222 49 15 chr1 136529920 136530508 -106133845 - MER21B LTR ERV1 -58 805 98 501 235 6 32 chr1 136530476 136530642 -106133711 - MER21B LTR ERV1 -404 201 1 * 207 189 0 0 chr1 136530666 136530703 -106133650 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 188 122 24 0 chr1 136531350 136531391 -106132962 + (CA)n Simple_repeat Simple_repeat 1 42 0 191 367 8 17 chr1 136531931 136532051 -106132302 - L2 LINE L2 -43 3270 3152 503 250 32 39 chr1 136532086 136532242 -106132111 + MIR SINE MIR 21 175 -87 277 160 7 0 chr1 136532243 136532302 -106132051 - L1ME1 LINE L1 -1 6183 6116 758 153 9 0 chr1 136532308 136532419 -106131934 + FLAM_C SINE Alu 8 119 -24 1285 113 6 0 chr1 136532533 136532710 -106131643 + AluJb SINE Alu 135 312 0 5614 222 54 24 chr1 136532714 136534052 -106130301 - L1ME1 LINE L1 -53 6113 4816 2356 85 20 0 chr1 136534052 136534347 -106130006 - AluSc SINE Alu -8 301 1 5614 222 54 24 chr1 136534347 136535900 -106128453 - L1ME1 LINE L1 -1350 4816 2425 25 31 0 0 chr1 136536898 136536930 -106127423 + AT_rich Low_complexity Low_complexity 1 32 0 2792 233 0 36 chr1 136537609 136538184 -106126169 + MLT2B3 LTR ERVL 1 554 0 445 326 92 0 chr1 136539080 136539276 -106125077 + MIR SINE MIR 46 259 -3 2280 102 10 0 chr1 136539840 136540143 -106124210 - AluSx SINE Alu -6 306 1 642 198 0 0 chr1 136540207 136540313 -106124040 + L2 LINE L2 3162 3267 -5 615 276 44 53 chr1 136541473 136541597 -106122756 - MIR SINE MIR 0 262 139 1685 155 30 44 chr1 136541597 136541894 -106122459 + AluJo SINE Alu 1 293 -19 615 276 44 53 chr1 136541894 136541997 -106122356 - MIR SINE MIR -123 139 37 393 256 173 45 chr1 136542043 136542199 -106122154 - MIR SINE MIR -30 232 57 21 0 0 0 chr1 136543675 136543696 -106120657 + AT_rich Low_complexity Low_complexity 1 21 0 208 274 0 0 chr1 136544909 136544960 -106119393 - L2 LINE L2 -86 3186 3136 254 320 112 19 chr1 136544995 136545201 -106119152 - L2 LINE L2 -218 3054 2830 466 141 94 12 chr1 136545375 136545460 -106118893 - AluS SINE Alu -220 93 2 298 292 10 10 chr1 136545869 136545965 -106118388 - MIR SINE MIR -58 204 109 542 142 9 62 chr1 136546484 136546597 -106117756 - MLT1D LTR MaLR -398 107 1 200 114 0 29 chr1 136546746 136546781 -106117572 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1988 136 23 16 chr1 136546833 136547142 -106117211 + AluSx SINE Alu 1 311 -1 460 159 0 0 chr1 136547380 136547449 -106116904 + Tigger2 DNA MER2_type 2 70 -2648 706 237 59 12 chr1 136547496 136547665 -106116688 - MER8 DNA MER2_type -62 177 1 828 296 97 30 chr1 136547902 136548735 -106115618 + L1ME4a LINE L1 5130 6026 -95 2262 108 0 0 chr1 136548767 136549072 -106115281 - AluSx SINE Alu -7 305 1 318 297 118 4 chr1 136549344 136549493 -106114860 + MIR SINE MIR 3 165 -86 1024 178 16 16 chr1 136549772 136549957 -106114396 - MER5A DNA MER1_type 0 189 5 528 299 60 28 chr1 136550733 136550950 -106113403 - MIR SINE MIR -1 261 38 229 271 141 0 chr1 136551114 136551199 -106113154 + L2 LINE L2 3175 3271 -1 242 301 214 24 chr1 136551339 136551671 -106112682 + L2 LINE L2 2915 3309 -4 418 207 164 36 chr1 136551965 136552105 -106112248 + MIR3 SINE MIR 36 193 -15 374 214 92 0 chr1 136552299 136552397 -106111956 - MIR SINE MIR -109 153 47 1911 147 3 0 chr1 136552464 136552749 -106111604 + AluJb SINE Alu 1 286 -26 1014 65 26 7 chr1 136552753 136552908 -106111445 + (GAAA)n Simple_repeat Simple_repeat 2 159 0 195 298 18 0 chr1 136554251 136554308 -106110045 - MIR SINE MIR -106 156 99 1897 121 8 82 chr1 136554500 136554698 -106109655 - L1MA5 LINE L1 0 6300 6140 2009 138 0 19 chr1 136554698 136555009 -106109344 + AluSx SINE Alu 1 305 -7 1897 121 8 82 chr1 136555009 136555175 -106109178 - L1MA5 LINE L1 -160 6140 5963 273 295 75 25 chr1 136556459 136556593 -106107760 + MIR SINE MIR 26 152 -56 2278 104 0 3 chr1 136556845 136557144 -106107209 - AluSx SINE Alu -14 298 1 300 319 168 0 chr1 136559055 136559168 -106105185 - MER115 DNA AcHobo -557 136 5 256 221 0 91 chr1 136559725 136559783 -106104570 + MIR SINE MIR 67 118 -144 1978 159 0 6 chr1 136559783 136560097 -106104256 - AluJb SINE Alu 0 312 1 256 221 0 91 chr1 136560097 136560115 -106104238 + MIR SINE MIR 118 136 -126 433 312 97 7 chr1 136560123 136560277 -106104076 - L2 LINE L2 -4 3309 3142 267 97 0 129 chr1 136560608 136560670 -106103683 - MIR SINE MIR -95 167 114 3175 186 10 17 chr1 136560977 136562179 -106102174 + L1PBa LINE L1 490 1927 -4936 1149 63 0 0 chr1 136562180 136562323 -106102030 + AluY SINE Alu 169 311 0 2252 92 36 6 chr1 136562324 136562683 -106101670 + L1PBa LINE L1 1926 2295 -4568 517 241 47 29 chr1 136762692 136762862 -105901491 + MIR SINE MIR 56 228 -34 1810 168 0 20 chr1 136763050 136763348 -105901005 + AluJb SINE Alu 11 302 -10 190 254 68 0 chr1 136763384 136763443 -105900910 - MIR SINE MIR -49 213 151 * 315 243 40 14 chr1 136763433 136763507 -105900846 - L2 LINE L2 -44 3269 3194 1724 134 60 28 chr1 136763516 136763862 -105900491 + L1MC2 LINE L1 5769 6132 -52 1072 169 0 7 chr1 136763864 136764089 -105900264 + AluJo SINE Alu 5 282 -30 498 56 0 0 chr1 136764089 136764160 -105900193 + L1MC2 LINE L1 6154 6224 -120 1161 199 0 18 chr1 136764165 136764386 -105899967 + AluJb SINE Alu 82 298 -14 495 115 154 0 chr1 136764386 136764490 -105899863 + L1MC2 LINE L1 6225 6344 0 581 281 81 24 chr1 136764501 136764523 -105899830 - L2 LINE L2 -185 3128 3109 2335 107 0 7 chr1 136764523 136764831 -105899522 + AluSc SINE Alu 1 306 -3 581 281 81 24 chr1 136764831 136765152 -105899201 - L2 LINE L2 -204 3109 2698 1568 238 191 63 chr1 136765152 136766025 -105898328 - L2 LINE L2 -813 2501 1517 2485 43 11 0 chr1 136766125 136766407 -105897946 - AluY SINE Alu -18 293 9 349 76 0 4 chr1 136766407 136766469 -105897884 - Alu SINE Alu -257 45 1 898 244 255 0 chr1 136766487 136766844 -105897509 - HAL1 LINE L1 -538 1969 1522 1477 160 0 105 chr1 136766903 136767216 -105897137 - AluJb SINE Alu -28 284 5 1654 154 12 72 chr1 136767260 136767579 -105896774 + AluJb SINE Alu 1 300 -12 613 285 134 34 chr1 136767579 136767616 -105896737 - HAL1 LINE L1 -1479 1028 996 2353 119 0 0 chr1 136767616 136767926 -105896427 - AluSg SINE Alu 0 310 1 613 285 134 34 chr1 136767926 136768239 -105896114 - HAL1 LINE L1 -1511 996 643 2548 58 0 0 chr1 136768534 136768828 -105895525 - AluY SINE Alu -17 294 1 918 169 13 0 chr1 136768829 136768983 -105895370 - AluJ SINE Alu -18 294 139 454 111 0 0 chr1 136769217 136769289 -105895064 + FLAM SINE Alu 54 125 -18 785 181 0 0 chr1 136769305 136769438 -105894915 - AluJ SINE Alu -169 133 1 1064 169 34 42 chr1 136769589 136769826 -105894527 + MER46A DNA MER2_type 2 236 0 1615 163 4 0 chr1 136769873 136770113 -105894240 - AluSx SINE Alu -71 241 1 889 154 0 0 chr1 136770123 136770253 -105894100 - FRAM SINE Alu -23 153 24 2178 129 0 13 chr1 136770284 136770593 -105893760 + AluJb SINE Alu 1 305 -7 544 178 0 0 chr1 136770600 136770690 -105893663 + Tigger4(Zombi) DNA MER2_type 254 343 -2388 2897 174 18 42 chr1 136770690 136770717 -105893636 + L1P LINE L1 4390 4416 -1730 2206 101 0 14 chr1 136770717 136771032 -105893321 + AluSq SINE Alu 1 311 0 2897 174 18 42 chr1 136771032 136771181 -105893172 + L1P LINE L1 4416 4567 -1579 1903 124 3 60 chr1 136771181 136771480 -105892873 + AluSx SINE Alu 2 283 -29 198 0 0 0 chr1 136771482 136771504 -105892849 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2897 174 18 42 chr1 136771504 136771994 -105892359 + L1P LINE L1 4568 5045 -1101 2138 67 33 57 chr1 136771996 136772296 -105892057 + AluSp SINE Alu 1 293 -20 2404 82 7 3 chr1 136772307 136772611 -105891742 + AluSq SINE Alu 1 305 -8 270 140 0 40 chr1 136772848 136772898 -105891455 + AluS SINE Alu 13 60 -248 1938 108 104 0 chr1 136775933 136776212 -105888141 - AluSx SINE Alu -4 308 1 779 142 8 15 chr1 136776213 136776347 -105888006 - AluJo/FLAM SINE Alu -169 133 1 2416 73 3 10 chr1 136776722 136777023 -105887330 - AluY SINE Alu -12 299 1 2282 113 3 0 chr1 136777088 136777388 -105886965 - AluSx SINE Alu -11 301 1 1682 123 0 0 chr1 136777719 136777946 -105886407 - AluSg/x SINE Alu -14 298 72 182 341 56 0 chr1 136778532 136778596 -105885757 + MER5B DNA MER1_type 46 105 -73 1953 141 7 16 chr1 136778596 136778900 -105885453 - AluJo SINE Alu -11 301 1 182 341 56 0 chr1 136778900 136778961 -105885392 + MER5B DNA MER1_type 105 178 0 2443 85 26 0 chr1 136779095 136779400 -105884953 + AluSp SINE Alu 1 313 0 2116 118 7 23 chr1 136779417 136779721 -105884632 + AluSx SINE Alu 1 299 -13 1012 120 7 0 chr1 136779733 136779875 -105884478 + FLAM_C SINE Alu 1 143 0 2206 107 6 25 chr1 136779953 136780135 -105884218 - AluSq SINE Alu 0 313 138 2237 97 0 41 chr1 136780135 136780455 -105883898 - AluSp SINE Alu -6 307 1 2206 107 6 25 chr1 136780455 136780591 -105883762 - AluSq SINE Alu -175 138 1 1910 130 56 0 chr1 136781111 136781396 -105882957 - AluSx SINE Alu -11 301 1 1639 125 147 11 chr1 136783840 136784112 -105880241 - AluJb SINE Alu -3 309 1 2300 92 7 3 chr1 136784456 136784750 -105879603 - AluSc SINE Alu -14 295 1 2079 131 10 3 chr1 136784757 136785048 -105879305 - AluSx SINE Alu -19 293 1 204 40 0 0 chr1 136790526 136790551 -105873802 + (CCCCCG)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr1 136791046 136791067 -105873286 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 136793253 136793276 -105871077 + AT_rich Low_complexity Low_complexity 1 23 0 2103 137 0 0 chr1 136793740 136794024 -105870329 + AluSx SINE Alu 1 284 -28 2188 92 4 4 chr1 136794024 136794305 -105870048 + AluSx SINE Alu 30 310 -2 1804 172 3 7 chr1 136795893 136796189 -105868164 - AluJb SINE Alu -17 295 1 2143 101 22 32 chr1 136796438 136796754 -105867599 + AluSq SINE Alu 1 313 0 1773 178 14 0 chr1 136797077 136797370 -105866983 - AluJb SINE Alu -15 297 1 2497 70 3 0 chr1 136797429 136797727 -105866626 - AluSg SINE Alu -11 299 1 184 344 73 10 chr1 136797974 136798070 -105866283 - L2 LINE L2 -8 3264 3163 1298 151 9 73 chr1 136798294 136798431 -105865922 + AluJo SINE Alu 1 118 -194 2341 97 3 3 chr1 136798431 136798731 -105865622 + AluSg SINE Alu 1 300 -10 1298 151 9 73 chr1 136798731 136798825 -105865528 + AluJo SINE Alu 118 217 -95 2462 90 0 0 chr1 136798912 136799212 -105865141 - AluY SINE Alu -11 300 1 1829 138 58 21 chr1 136800799 136801090 -105863263 - AluSx SINE Alu -10 302 1 1934 137 14 0 chr1 136801199 136801477 -105862876 + AluSx SINE Alu 9 290 -22 757 210 129 5 chr1 136801655 136801841 -105862512 - MER3 DNA MER1_type 0 209 1 2683 36 0 0 chr1 136801923 136802224 -105862129 - AluY SINE Alu -10 301 1 1037 100 0 0 chr1 136802224 136802354 -105861999 - AluSq/x SINE Alu -179 134 5 2305 125 0 0 chr1 136802927 136803230 -105861123 - AluSq SINE Alu -10 303 1 2334 94 3 7 chr1 136803245 136803544 -105860809 - AluSx SINE Alu -14 298 1 2401 99 0 0 chr1 136803589 136803892 -105860461 + AluSg1 SINE Alu 1 303 -6 1868 169 0 7 chr1 136803895 136804202 -105860151 + AluSx SINE Alu 1 305 -7 1909 133 0 0 chr1 136804204 136804467 -105859886 + AluSq SINE Alu 1 263 -50 2164 113 3 0 chr1 136804627 136804910 -105859443 - AluSx SINE Alu -28 284 1 2117 124 7 3 chr1 136804919 136805217 -105859136 - AluSx SINE Alu -13 299 1 1173 139 23 0 chr1 136805305 136805477 -105858876 - AluJo SINE Alu -93 219 44 1002 157 54 0 chr1 136805488 136805654 -105858699 - AluSg/x SINE Alu -12 300 126 2132 110 13 17 chr1 136805678 136805977 -105858376 - AluSq SINE Alu -15 298 1 2250 112 6 26 chr1 136807538 136807851 -105856502 + AluSx SINE Alu 1 307 -5 23 0 0 0 chr1 136808046 136808069 -105856284 + AT_rich Low_complexity Low_complexity 1 23 0 2440 87 3 3 chr1 136808463 136808773 -105855580 + AluSp SINE Alu 1 310 -3 2221 114 0 3 chr1 136808795 136809092 -105855261 - 7SLRNA srpRNA srpRNA -13 307 12 2050 125 24 17 chr1 136809354 136809521 -105854832 - AluSg SINE Alu -12 298 127 2674 51 0 10 chr1 136809521 136809835 -105854518 - AluY SINE Alu 0 311 1 2050 125 24 17 chr1 136809835 136809963 -105854390 - AluSg SINE Alu -183 127 1 192 214 83 95 chr1 136810621 136810705 -105853648 - MER5A DNA MER1_type -46 143 61 2470 73 0 22 chr1 136810706 136811022 -105853331 - AluY SINE Alu -2 309 1 209 241 12 108 chr1 136811023 136811106 -105853247 - MER5A DNA MER1_type -114 75 1 2640 58 0 3 chr1 136811128 136811438 -105852915 - AluY SINE Alu -2 309 1 477 269 150 18 chr1 136811944 136812111 -105852242 + MER5A DNA MER1_type 1 189 0 2427 80 0 3 chr1 136812483 136812784 -105851569 - AluSq SINE Alu -13 300 1 2052 127 0 38 chr1 136812793 136812969 -105851384 - AluSx SINE Alu -10 302 142 2391 90 3 0 chr1 136812969 136813268 -105851085 - AluSx SINE Alu -11 301 2 2052 127 0 38 chr1 136813268 136813405 -105850948 - AluSx SINE Alu -170 142 1 1108 177 74 15 chr1 136813589 136813792 -105850561 - AluJo SINE Alu -97 215 1 225 305 46 86 chr1 136813806 136814003 -105850350 + L2 LINE L2 2888 3076 -196 306 279 161 54 chr1 136814349 136814498 -105849855 + L1MEd LINE L1 2 134 -5985 2489 76 0 10 chr1 136814498 136814812 -105849541 + AluY SINE Alu 1 311 0 306 279 161 54 chr1 136814812 136814978 -105849375 + L1MEd LINE L1 134 351 -5768 467 224 124 81 chr1 136815000 136815105 -105849248 + L1MEd LINE L1 606 705 -5414 2054 142 0 7 chr1 136815105 136815408 -105848945 + AluSx SINE Alu 1 301 -11 467 224 124 81 chr1 136815408 136815512 -105848841 + L1MEd LINE L1 705 824 -5295 * 1122 272 82 33 chr1 136815503 136815609 -105848744 + L1MEd LINE L1 2721 2820 -3309 2287 80 10 3 chr1 136815609 136815898 -105848455 + AluY SINE Alu 1 291 -20 1122 272 82 33 chr1 136815898 136816368 -105847985 + L1MEd LINE L1 2820 3265 -2864 2325 110 0 0 chr1 136816368 136816676 -105847677 + AluSx SINE Alu 1 308 -4 2429 71 0 16 chr1 136816677 136816986 -105847367 + AluY SINE Alu 1 304 -7 1122 272 82 33 chr1 136816986 136817260 -105847093 + L1MEd LINE L1 3264 3616 -2513 752 237 37 40 chr1 136817298 136817556 -105846797 + L1ME3A LINE L1 5658 5911 -259 1971 141 10 3 chr1 136817556 136817853 -105846500 + AluJb SINE Alu 1 299 -13 752 237 37 40 chr1 136817853 136817894 -105846459 + L1ME3A LINE L1 5911 5951 -219 1554 192 11 0 chr1 136818326 136818612 -105845741 + AluJb SINE Alu 11 299 -13 907 261 113 34 chr1 136819587 136820028 -105844325 + MLT1K LTR MaLR 1 476 0 222 191 0 0 chr1 136822830 136822872 -105841481 + (CCCA)n Simple_repeat Simple_repeat 1 42 0 189 227 23 23 chr1 136823422 136823466 -105840887 - MIR3 SINE MIR -8 200 157 2581 68 0 10 chr1 136823471 136823781 -105840572 + AluY SINE Alu 1 307 -4 2355 93 0 0 chr1 136826599 136826890 -105837463 - AluSx SINE Alu -2 310 20 21 0 0 0 chr1 136827306 136827327 -105837026 + AT_rich Low_complexity Low_complexity 1 21 0 2152 75 61 0 chr1 136827557 136827836 -105836517 + AluSp SINE Alu 7 302 -11 871 300 42 0 chr1 136827836 136828073 -105836280 - MIR SINE MIR -14 248 2 1503 187 51 15 chr1 136828120 136828243 -105836110 + AluJo SINE Alu 1 118 -195 449 17 17 0 chr1 136828243 136828301 -105836052 + (CA)n Simple_repeat Simple_repeat 2 60 0 1503 187 51 15 chr1 136828301 136828480 -105835873 + AluJo SINE Alu 118 313 0 2028 70 13 93 chr1 136828489 136828813 -105835540 + AluSp SINE Alu 6 305 0 289 258 65 0 chr1 136829091 136829153 -105835200 - L2 LINE L2 -38 3234 3169 2367 81 0 3 chr1 136829235 136829531 -105834822 - AluY SINE Alu -16 295 1 588 216 22 37 chr1 136829533 136829667 -105834686 - MIR SINE MIR -98 164 33 2159 134 0 13 chr1 136829668 136829973 -105834380 - AluSx SINE Alu -11 301 1 491 231 61 77 chr1 136830016 136830116 -105834237 - LTR25 LTR ERV1 -35 693 593 240 100 0 0 chr1 136830116 136830156 -105834197 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1487 117 0 59 chr1 136830165 136830318 -105834035 - AluSg/x SINE Alu -35 277 139 2135 123 0 30 chr1 136830318 136830620 -105833733 - AluSc SINE Alu -16 293 1 1487 117 0 59 chr1 136830620 136830688 -105833665 - AluSg/x SINE Alu -173 139 69 491 231 61 77 chr1 136830688 136831009 -105833344 - LTR25 LTR ERV1 -143 585 336 236 95 191 48 chr1 136830981 136831044 -105833309 - MER51A LTR ERV1 -355 279 208 * 525 129 53 0 chr1 136831187 136831298 -105833055 - MER61E LTR ERV1 -484 85 1 1346 133 5 15 chr1 136831358 136831561 -105832792 - AluSg/x SINE Alu -13 299 99 427 153 34 17 chr1 136831661 136831779 -105832574 + CT-rich Low_complexity Low_complexity 2 121 0 1266 144 0 21 chr1 136831787 136831981 -105832372 - AluSg/x SINE Alu -1 309 120 2318 98 0 0 chr1 136832785 136833081 -105831272 + AluSg SINE Alu 1 296 -14 188 273 0 18 chr1 136835742 136835797 -105828556 + L2 LINE L2 3250 3303 -10 203 228 0 53 chr1 136836248 136836305 -105828048 + GA-rich Low_complexity Low_complexity 1 54 0 207 288 30 0 chr1 136838557 136838623 -105825730 + L2 LINE L2 3246 3313 0 1705 197 0 14 chr1 136838722 136839016 -105825337 + AluJo SINE Alu 1 290 -22 330 45 0 0 chr1 136839044 136839088 -105825265 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 697 254 206 0 chr1 136839839 136840048 -105824305 + MIR SINE MIR 3 254 -8 2317 82 0 0 chr1 136840963 136841267 -105823086 - AluSg SINE Alu 0 304 1 538 246 52 0 chr1 136841310 136841444 -105822909 + MIR3 SINE MIR 63 203 -5 2244 93 0 10 chr1 136842799 136843112 -105821241 - AluY SINE Alu 0 311 1 1143 161 0 6 chr1 136843124 136843291 -105821062 - AluJb SINE Alu -9 303 136 1867 158 13 19 chr1 136843291 136843601 -105820752 - AluJo SINE Alu -2 310 3 1815 176 3 13 chr1 136843798 136844100 -105820253 - AluJo SINE Alu -13 299 1 2526 68 0 0 chr1 136844124 136844418 -105819935 + AluSc SINE Alu 1 294 -15 2416 53 7 0 chr1 136844418 136844730 -105819623 + AluSp SINE Alu 1 314 0 379 290 140 27 chr1 136844955 136845176 -105819177 + MIR SINE MIR 11 256 -6 617 175 117 8 chr1 136845178 136845298 -105819055 + FLAM_C SINE Alu 1 133 0 2506 71 0 0 chr1 136846024 136846320 -105818033 - AluY SINE Alu -15 296 1 185 305 95 57 chr1 136846345 136846450 -105817903 - L3b LINE CR1 -42 1541 1433 1226 107 0 28 chr1 136847360 136847537 -105816816 - AluSg/x SINE Alu -5 305 134 2547 70 0 0 chr1 136847579 136847880 -105816473 + AluY SINE Alu 1 301 -10 547 176 55 161 chr1 136848714 136848913 -105815440 - FAM SINE Alu 0 49 1 23 0 0 0 chr1 136849071 136849094 -105815259 + AT_rich Low_complexity Low_complexity 1 23 0 1809 100 0 8 chr1 136849210 136849451 -105814902 + AluSq SINE Alu 1 239 -74 2041 81 29 7 chr1 136849451 136849723 -105814630 + AluSq SINE Alu 23 301 -12 1168 139 23 0 chr1 136849734 136849906 -105814447 + AluJo SINE Alu 44 219 -93 2107 124 7 3 chr1 136849994 136850292 -105814061 + AluSx SINE Alu 1 299 -13 2358 100 3 0 chr1 136850301 136850600 -105813753 + AluSx SINE Alu 1 300 -12 2316 84 0 3 chr1 136850823 136851107 -105813246 - AluSx SINE Alu -29 283 1 390 204 19 56 chr1 136851530 136851638 -105812715 + MIR3 SINE MIR 81 184 -24 22 0 0 0 chr1 136852279 136852301 -105812052 + AT_rich Low_complexity Low_complexity 1 22 0 370 285 45 85 chr1 136852907 136853107 -105811246 + MIR SINE MIR 71 262 0 2615 47 0 3 chr1 136853441 136853741 -105810612 - AluY SINE Alu -12 299 1 185 305 95 57 chr1 136853766 136853871 -105810482 - L3b LINE CR1 -42 1541 1433 1210 113 0 28 chr1 136854781 136854958 -105809395 - AluSg/x SINE Alu -5 307 136 2492 76 0 0 chr1 136855000 136855301 -105809052 + AluY SINE Alu 1 301 -10 547 176 55 161 chr1 136856135 136856334 -105808019 - FAM SINE Alu 0 49 1 23 0 0 0 chr1 136856492 136856515 -105807838 + AT_rich Low_complexity Low_complexity 1 23 0 1809 100 0 8 chr1 136856631 136856872 -105807481 + AluSq SINE Alu 1 239 -74 2197 83 3 7 chr1 136856872 136857161 -105807192 + AluSx SINE Alu 23 311 -1 336 311 61 20 chr1 136857168 136857364 -105806989 + HAL1 LINE L1 2299 2502 -5 2265 92 3 33 chr1 136857365 136857668 -105806685 - AluSx SINE Alu -18 294 1 2380 96 0 3 chr1 136858396 136858699 -105805654 - AluSx SINE Alu -9 303 2 2140 128 0 3 chr1 136860624 136860914 -105803439 + AluSx SINE Alu 1 289 -23 189 0 0 0 chr1 136860921 136860942 -105803411 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1193 267 104 28 chr1 136860961 136861072 -105803281 + L1ME3A LINE L1 5188 5289 -881 2214 133 0 19 chr1 136861072 136861389 -105802964 + AluSx SINE Alu 1 311 -1 1193 267 104 28 chr1 136861389 136861537 -105802816 + L1ME3A LINE L1 5289 5424 -746 2018 128 7 7 chr1 136861537 136861825 -105802528 - AluJb SINE Alu -16 296 9 1193 267 104 28 chr1 136861825 136862286 -105802067 + L1ME3A LINE L1 5424 5962 -208 23 0 0 0 chr1 136862595 136862618 -105801735 + AT_rich Low_complexity Low_complexity 1 23 0 935 185 0 0 chr1 136862618 136862764 -105801589 - FRAM SINE Alu -18 158 13 419 264 28 113 chr1 136862766 136862919 -105801434 - L1M4 LINE L1 -1338 4808 4676 2052 224 99 43 chr1 136862919 136863013 -105801340 + MLT1G1 LTR MaLR 1 88 -507 2166 116 0 3 chr1 136863013 136863349 -105801004 + AluSx SINE Alu 1 335 0 2052 224 99 43 chr1 136863349 136863816 -105800537 + MLT1G1 LTR MaLR 88 595 0 419 264 28 113 chr1 136863816 136863874 -105800479 - L1M4 LINE L1 -1470 4676 4615 2167 124 0 0 chr1 136863962 136864266 -105800087 - AluSx SINE Alu 0 304 1 22 70 0 0 chr1 136865111 136865154 -105799199 + AT_rich Low_complexity Low_complexity 1 43 0 763 220 70 120 chr1 136865233 136865343 -105799010 - L1MC5 LINE L1 -41 7920 7806 2174 125 0 3 chr1 136865343 136865640 -105798713 - AluSg SINE Alu -14 296 1 2213 104 10 0 chr1 136865649 136865938 -105798415 - AluSq SINE Alu -21 292 1 2198 109 10 0 chr1 136865944 136866238 -105798115 - AluSx SINE Alu -15 297 1 763 220 70 120 chr1 136866238 136866670 -105797683 - L1MC5 LINE L1 -168 7793 7389 700 162 0 0 chr1 136866673 136866778 -105797575 - AluJb SINE Alu -15 297 193 230 217 0 84 chr1 136866778 136866861 -105797492 + L1MC5 LINE L1 7845 7920 -41 763 127 0 17 chr1 136866925 136867043 -105797310 - AluJb SINE Alu -121 191 76 2251 112 0 16 chr1 136867176 136867479 -105796874 - AluSq SINE Alu -14 299 2 1770 155 4 4 chr1 136867488 136867753 -105796600 - AluSx SINE Alu -43 269 5 402 180 0 0 chr1 136867757 136867851 -105796502 - L1M4 LINE L1 -814 5332 5239 2403 89 0 13 chr1 136867879 136868193 -105796160 - AluSx SINE Alu -2 310 1 2055 132 0 0 chr1 136868916 136869196 -105795157 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr1 136869197 136869219 -105795134 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 720 171 8 8 chr1 136869306 136869435 -105794918 + AluJb SINE Alu 183 311 -1 756 218 0 0 chr1 136869443 136869757 -105794596 + FLAM_C SINE Alu 1 314 0 798 156 6 22 chr1 136869577 136869789 -105794564 + GA-rich Low_complexity Low_complexity 1 209 0 554 73 12 0 chr1 136869973 136870055 -105794298 + MSTA LTR MaLR 1 83 -345 5894 153 22 4 chr1 136870060 136871043 -105793310 + MSTA-int LTR MaLR 651 1651 0 2994 103 12 14 chr1 136871043 136871470 -105792883 + MSTA LTR MaLR 1 426 -2 516 206 93 0 chr1 136873580 136873687 -105790666 + L2 LINE L2 3156 3272 0 2199 116 0 7 chr1 136874662 136874964 -105789389 + AluSx SINE Alu 12 311 -1 678 227 84 7 chr1 136875222 136875376 -105788977 - FAM SINE Alu -9 166 1 725 164 0 0 chr1 136875438 136875554 -105788799 - AluSq/x SINE Alu -195 117 2 204 260 293 0 chr1 136876800 136876923 -105787430 - MER91A DNA MER1_type -10 186 28 430 261 152 30 chr1 136877635 136877800 -105786553 + MIR SINE MIR 4 188 -74 207 324 22 29 chr1 136877975 136878107 -105786246 + MIR SINE MIR 24 153 -55 190 261 14 72 chr1 136878314 136878383 -105785970 + L3 LINE CR1 575 639 -938 210 203 0 68 chr1 136878499 136878558 -105785795 + MIR SINE MIR 16 70 -138 1963 113 0 85 chr1 136878691 136879019 -105785334 + AluSq SINE Alu 1 300 -13 371 300 3 10 chr1 136880415 136880459 -105783894 + (TG)n Simple_repeat Simple_repeat 1 44 -685 2125 97 18 0 chr1 136880459 136880761 -105783592 - AluSq SINE Alu 0 307 1 371 300 3 10 chr1 136880761 136881150 -105783203 + (TG)n Simple_repeat Simple_repeat 44 729 0 1598 85 0 0 chr1 136882068 136882267 -105782086 - AluSq SINE Alu -114 199 1 627 131 37 37 chr1 136882269 136882376 -105781977 - AluJo SINE Alu -170 142 36 355 274 140 43 chr1 136882595 136882781 -105781572 - L2 LINE L2 -26 3287 3084 2335 98 7 3 chr1 136883160 136883467 -105780886 - AluSg SINE Alu -2 308 1 2323 92 0 0 chr1 136883615 136883907 -105780446 - AluY SINE Alu -19 292 1 2056 129 7 0 chr1 136884329 136884616 -105779737 + AluJb SINE Alu 11 299 -13 1223 137 126 0 chr1 136884736 136884926 -105779427 + AluJo SINE Alu 5 218 -94 215 200 0 0 chr1 136884962 136884997 -105779356 + polypurine Low_complexity Low_complexity 3 37 0 662 289 166 15 chr1 136885899 136886356 -105777997 + L1ME LINE L1 5283 5808 -313 2033 114 55 10 chr1 136886444 136886734 -105777619 - AluSg SINE Alu -7 303 1 25 0 0 0 chr1 136886783 136886808 -105777545 + AT_rich Low_complexity Low_complexity 1 25 0 1477 166 28 48 chr1 136886838 136887127 -105777226 + AluJo SINE Alu 13 295 -17 2308 68 3 64 chr1 136887130 136887456 -105776897 + AluY SINE Alu 1 306 -5 23 0 0 0 chr1 136887566 136887589 -105776764 + AT_rich Low_complexity Low_complexity 1 23 0 427 328 25 13 chr1 136887610 136887848 -105776505 + L1MD1 LINE L1 5421 5661 -460 2288 107 0 3 chr1 136887884 136888183 -105776170 + AluSx SINE Alu 9 306 -6 2215 127 43 3 chr1 136888193 136888540 -105775813 + MER46B DNA MER2_type 1 236 0 876 286 13 25 chr1 136888638 136888876 -105775477 - MIR SINE MIR -19 243 9 444 291 135 22 chr1 136889223 136889591 -105774762 + ERVL LTR ERVL 3060 3464 -2190 898 253 54 17 chr1 136889815 136890056 -105774297 + MIR SINE MIR 13 262 0 566 117 11 0 chr1 136890074 136890168 -105774185 + L1MB2 LINE L1 6048 6142 -29 2288 92 20 3 chr1 136890168 136890472 -105773881 - AluSq SINE Alu -4 309 1 1600 181 16 16 chr1 136890524 136890828 -105773525 + AluJo SINE Alu 1 304 -8 23 0 0 0 chr1 136890871 136890894 -105773459 + AT_rich Low_complexity Low_complexity 1 23 0 605 322 75 24 chr1 136890934 136891587 -105772766 + ERVL LTR ERVL 3827 4561 -1203 756 229 62 6 chr1 136891609 136891788 -105772565 - MIR SINE MIR -58 204 16 1192 291 116 32 chr1 136891788 136892450 -105771903 + ERVL LTR ERVL 4572 5289 -475 962 220 93 8 chr1 136892453 136892689 -105771664 + MIR SINE MIR 7 262 0 1257 185 26 15 chr1 136892760 136893030 -105771323 + L1MD1 LINE L1 5657 5929 -313 1270 121 11 26 chr1 136893030 136893220 -105771133 - AluJb SINE Alu -16 296 110 1762 127 4 0 chr1 136893221 136893466 -105770887 + AluSx SINE Alu 1 246 -66 1187 165 72 8 chr1 136894551 136894800 -105769553 - MER58B DNA MER1_type 0 341 77 1562 149 57 43 chr1 136894810 136895091 -105769262 + AluJb SINE Alu 12 296 -16 4084 156 31 52 chr1 136895093 136895523 -105768830 + L1MB3 LINE L1 4903 5341 -842 2233 122 0 3 chr1 136895523 136895819 -105768534 + AluSg SINE Alu 2 296 -14 4084 156 31 52 chr1 136895819 136896547 -105767806 + L1MB3 LINE L1 5341 6054 -129 402 232 0 42 chr1 136896565 136896660 -105767693 - MER58B DNA MER1_type -250 91 1 723 90 0 27 chr1 136896703 136896814 -105767539 + AluJb SINE Alu 199 306 -6 2466 87 0 0 chr1 136899116 136899416 -105764937 + AluSq SINE Alu 1 300 -13 1975 159 13 0 chr1 136899959 136900260 -105764093 + AluSx SINE Alu 1 305 -7 619 195 135 32 chr1 136900747 136900800 -105763553 - MER33 DNA MER1_type -2271 314 268 1376 133 149 26 chr1 136900800 136901000 -105763353 + MER44D DNA MER2_type 1 175 -2316 207 0 0 0 chr1 136901000 136901023 -105763330 + (TA)n Simple_repeat Simple_repeat 1 23 0 1376 133 149 26 chr1 136901023 136901124 -105763229 + MER44D DNA MER2_type 175 609 0 619 195 135 32 chr1 136901124 136901352 -105763001 - MER33 DNA MER1_type -2317 268 4 1903 149 28 7 chr1 136901401 136901690 -105762663 + AluJb SINE Alu 1 295 -17 1316 142 0 38 chr1 136901815 136902027 -105762326 - AluJo SINE Alu -24 288 85 1782 170 6 64 chr1 136902316 136902646 -105761707 - AluJb SINE Alu -1 311 1 1719 175 14 27 chr1 136902646 136902942 -105761411 - AluSx SINE Alu -19 293 1 2354 116 0 3 chr1 136902959 136903270 -105761083 - AluSg SINE Alu 0 310 1 2976 144 51 43 chr1 136903296 136903786 -105760567 - L1MA4 LINE L1 -11 6289 5792 1752 117 0 12 chr1 136903786 136904026 -105760327 - AluSg SINE Alu -18 292 56 2976 144 51 43 chr1 136904026 136904144 -105760209 - L1MA4 LINE L1 -508 5792 5676 249 210 62 12 chr1 136904200 136904281 -105760072 - L1MC5 LINE L1 -176 7785 7701 360 0 0 0 chr1 136904283 136904323 -105760030 + (TG)n Simple_repeat Simple_repeat 1 40 0 2236 112 3 3 chr1 136904351 136904647 -105759706 + AluSq SINE Alu 1 296 -17 2237 96 3 3 chr1 136904650 136904943 -105759410 + AluSc SINE Alu 1 293 -16 1652 178 3 39 chr1 136905176 136905485 -105758868 + AluJo SINE Alu 6 303 -9 844 165 0 7 chr1 136905593 136905728 -105758625 - AluSc SINE Alu -24 285 154 705 113 0 0 chr1 136905727 136905824 -105758529 - AluS SINE Alu -212 101 5 * 2126 104 19 7 chr1 136905863 136906172 -105758181 - AluSq SINE Alu 0 313 1 2397 55 0 19 chr1 136906410 136906720 -105757633 - AluY SINE Alu -7 304 1 205 254 36 45 chr1 136907262 136907306 -105757047 + MIR SINE MIR 154 197 -65 2100 108 10 0 chr1 136907306 136907603 -105756750 - AluSp SINE Alu -13 300 1 205 254 36 45 chr1 136907603 136907668 -105756685 + MIR SINE MIR 197 262 0 850 202 6 30 chr1 136908248 136908416 -105755937 + AluJb SINE Alu 129 292 -20 1382 136 43 96 chr1 136908677 136909000 -105755353 + AluJo SINE Alu 1 306 -6 759 111 0 0 chr1 136909002 136909101 -105755252 + AluS SINE Alu 3 101 -211 26 0 0 0 chr1 136910230 136910256 -105754097 + AT_rich Low_complexity Low_complexity 1 26 0 302 269 26 26 chr1 136910599 136910677 -105753676 - L2 LINE L2 -14 3299 3222 1078 321 177 35 chr1 136910827 136911999 -105752354 - L2 LINE L2 -362 2952 1615 543 113 0 0 chr1 136912368 136912448 -105751905 + AluJ SINE Alu 45 124 -188 1592 104 155 4 chr1 136912467 136912718 -105751635 + AluJb SINE Alu 1 289 -13 2170 108 0 13 chr1 136914057 136914373 -105749980 - AluSx SINE Alu 0 312 1 457 254 200 0 chr1 136914536 136914666 -105749687 + MER5A DNA MER1_type 31 186 -3 197 65 32 0 chr1 136915547 136915578 -105748775 + (TTA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr1 136917554 136917577 -105746776 + AT_rich Low_complexity Low_complexity 1 23 0 863 163 12 19 chr1 136919591 136919751 -105744602 + AluJ SINE Alu 129 287 -25 183 42 0 0 chr1 136922690 136922714 -105741639 + (CATCG)n Simple_repeat Simple_repeat 1 24 0 2311 74 0 3 chr1 136922833 136923142 -105741211 - AluSx SINE Alu -4 308 1 385 295 78 0 chr1 136923229 136923358 -105740995 - MIR SINE MIR -76 186 48 1634 116 113 0 chr1 136923376 136923493 -105740860 + AluJb SINE Alu 1 103 -209 189 0 0 0 chr1 136923493 136923514 -105740839 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1634 116 113 0 chr1 136923514 136923671 -105740682 + AluJb SINE Alu 103 306 -6 1407 196 45 7 chr1 136923902 136924193 -105740160 - MER67A LTR ERV1 0 543 242 250 204 82 0 chr1 136924160 136924209 -105740144 - MER67C LTR ERV1 -408 302 250 * 1267 141 27 65 chr1 136924228 136924396 -105739957 - AluJb SINE Alu -11 301 145 1934 128 0 49 chr1 136924396 136924724 -105739629 - AluSx SINE Alu 0 312 1 1267 141 27 65 chr1 136924724 136924818 -105739535 - AluJb SINE Alu -167 145 49 2043 133 0 13 chr1 136924819 136925134 -105739219 + AluSx SINE Alu 1 311 -1 550 172 32 19 chr1 136925134 136925291 -105739062 + GA-rich Low_complexity Low_complexity 1 159 0 333 87 0 0 chr1 136925314 136925360 -105738993 - AluJb SINE Alu -256 46 1 * 884 102 31 8 chr1 136925360 136925486 -105738867 - MER67A LTR ERV1 -315 228 100 30 27 0 0 chr1 136925504 136925541 -105738812 + AT_rich Low_complexity Low_complexity 1 37 0 1828 86 0 0 chr1 136925656 136925890 -105738463 - AluSq SINE Alu -77 236 3 1147 197 105 3 chr1 136926189 136926504 -105737849 - L1M4 LINE L1 -952 5194 4848 1843 160 3 3 chr1 136926504 136926791 -105737562 + AluJo SINE Alu 1 287 -25 1654 144 76 4 chr1 136927063 136927340 -105737013 - AluSx SINE Alu -15 297 1 24 0 0 0 chr1 136927341 136927365 -105736988 + AT_rich Low_complexity Low_complexity 1 24 0 2343 78 0 0 chr1 136927386 136927682 -105736671 - AluY SINE Alu -15 296 1 1962 119 10 0 chr1 136927682 136927977 -105736376 - AluSq SINE Alu -15 298 1 896 104 7 22 chr1 136927977 136928112 -105736241 - AluSg1 SINE Alu -176 133 1 1415 180 3 51 chr1 136928945 136929256 -105735097 - AluJb SINE Alu -16 296 1 354 261 80 83 chr1 136929937 136930251 -105734102 + L1MC5 LINE L1 7513 7825 -136 682 291 109 0 chr1 136930756 136930986 -105733367 - MIR SINE MIR -6 256 2 261 268 0 0 chr1 136931368 136931424 -105732929 + L2 LINE L2 3203 3258 -14 330 315 35 19 chr1 136931433 136931566 -105732787 + MIR SINE MIR 6 139 -69 1638 139 3 53 chr1 136931624 136931927 -105732426 + AluSx SINE Alu 20 307 -5 22 56 0 0 chr1 136931975 136932011 -105732342 + AT_rich Low_complexity Low_complexity 1 36 0 2126 123 0 0 chr1 136932286 136932587 -105731766 - AluSx SINE Alu -11 301 1 279 255 138 0 chr1 136932745 136932839 -105731514 - MIR SINE MIR -58 204 98 1704 146 17 7 chr1 136932844 136933132 -105731221 - AluJb SINE Alu -21 291 1 873 206 0 6 chr1 136933167 136933327 -105731026 - FRAM SINE Alu -7 159 1 1689 150 23 13 chr1 136933337 136933637 -105730716 - AluJo SINE Alu -9 303 1 2036 114 0 17 chr1 136933643 136933940 -105730413 - AluSx SINE Alu -20 292 1 2242 96 0 19 chr1 136934278 136934590 -105729763 - AluSp SINE Alu -7 306 1 419 195 0 0 chr1 136935183 136935265 -105729088 - AluJ/FRAM SINE Alu -1 301 220 1606 113 3 57 chr1 136935265 136935548 -105728805 - AluSq SINE Alu -45 268 1 2259 92 0 3 chr1 136936276 136936579 -105727774 - AluSx SINE Alu -9 303 2 27 0 0 0 chr1 136938977 136939004 -105725349 + AT_rich Low_complexity Low_complexity 1 27 0 646 199 37 0 chr1 136939926 136940062 -105724291 - FLAM_C SINE Alu -1 142 2 422 247 19 82 chr1 136940212 136940370 -105723983 + MIR SINE MIR 46 193 -69 447 19 0 0 chr1 136940605 136940657 -105723696 + (CA)n Simple_repeat Simple_repeat 2 53 0 1975 122 3 14 chr1 136940920 136941216 -105723137 + AluJb SINE Alu 1 293 -19 2174 91 3 7 chr1 136941218 136941515 -105722838 + AluSg SINE Alu 1 296 -14 2181 100 0 13 chr1 136941923 136942234 -105722119 - AluSc SINE Alu -2 307 1 2126 117 0 0 chr1 136942322 136942620 -105721733 - AluSx SINE Alu -9 303 6 827 159 90 0 chr1 136942620 136942765 -105721588 + AluSg/x SINE Alu 115 272 -40 312 27 0 0 chr1 136942765 136942802 -105721551 + (CA)n Simple_repeat Simple_repeat 2 38 0 552 134 126 24 chr1 136942803 136942930 -105721423 + Charlie1 DNA MER1_type 2420 2559 -202 206 32 32 0 chr1 136942941 136942972 -105721381 + (TA)n Simple_repeat Simple_repeat 2 33 0 2178 109 0 6 chr1 136942972 136943285 -105721068 - AluSx SINE Alu -1 311 1 26 0 0 0 chr1 136943285 136943311 -105721042 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1 136943459 136943479 -105720874 + (A)n Simple_repeat Simple_repeat 1 20 0 971 135 16 67 chr1 136943482 136943558 -105720795 - L1M4 LINE L1 -1285 4861 4783 2342 66 0 7 chr1 136943558 136943860 -105720493 - AluY SINE Alu -11 300 1 971 135 16 67 chr1 136943860 136943976 -105720377 - L1M4 LINE L1 -1363 4783 4679 577 239 45 141 chr1 136943967 136944093 -105720260 - L1MCc LINE L1 -4575 2287 2151 * 1968 143 0 16 chr1 136944093 136944424 -105719929 - AluSx SINE Alu 0 312 2 577 239 45 141 chr1 136944424 136944552 -105719801 - L1MCc LINE L1 -4711 2151 2012 2166 113 13 3 chr1 136944552 136944861 -105719492 - AluSx SINE Alu 0 312 1 577 239 45 141 chr1 136944861 136945708 -105718645 - L1MCc LINE L1 -4850 2012 1165 1560 156 6 60 chr1 136945738 136946052 -105718301 - AluJo SINE Alu -15 297 1 1455 189 20 26 chr1 136946571 136946873 -105717480 + AluJb SINE Alu 1 300 -12 2042 104 0 0 chr1 136946876 136947187 -105717166 + AluSc SINE Alu 1 311 0 2252 101 0 0 chr1 136947670 136947967 -105716386 + AluSq SINE Alu 7 303 -10 418 268 159 28 chr1 136947968 136948290 -105716063 + L1ME3 LINE L1 5580 5948 -214 2397 56 3 0 chr1 136948461 136948763 -105715590 + AluY SINE Alu 1 303 -8 470 176 0 12 chr1 136948910 136948995 -105715358 - FAM SINE Alu -17 168 85 1539 137 73 0 chr1 136949012 136949245 -105715108 + L1M1 LINE L1 1759 2008 -5557 2075 86 0 27 chr1 136949245 136949590 -105714763 + AluSg SINE Alu 1 337 0 2242 98 7 0 chr1 136949590 136949897 -105714456 + AluSq SINE Alu 1 309 -4 306 261 100 0 chr1 136950005 136950135 -105714218 - L1ME4a LINE L1 -215 5906 5764 1071 143 0 6 chr1 136950135 136950296 -105714057 - FRAM SINE Alu -6 160 1 2170 81 7 3 chr1 136950301 136950622 -105713731 - AluSp SINE Alu 0 322 1 1237 170 27 8 chr1 136950624 136950883 -105713470 - AluJb SINE Alu -15 297 34 1807 141 7 20 chr1 136950883 136951188 -105713165 - AluJo SINE Alu -11 301 1 450 288 111 44 chr1 136951189 136951505 -105712848 - L1ME4a LINE L1 -2042 5766 5430 557 254 49 0 chr1 136951506 136951628 -105712725 - MER63A DNA MER1_type -25 185 58 1751 133 7 17 chr1 136951695 136952009 -105712344 + AluSx SINE Alu 1 311 0 524 81 92 0 chr1 136952022 136952109 -105712244 - L1MD1 LINE L1 -1 6241 6147 12098 52 2 1 chr1 137152109 137153742 -105510611 + L1P LINE L1 1494 3127 -3019 11933 38 4 1 chr1 137153879 137156118 -105508235 - L1PA3 LINE L1 0 6155 3912 34568 60 27 28 chr1 137156222 137158082 -105506271 + L1P LINE L1 1 1861 -4285 261 181 0 0 chr1 137158082 137158160 -105506193 + Alu SINE Alu 256 308 0 34568 60 27 28 chr1 137158160 137161093 -105503260 + L1P LINE L1 1861 4866 -1280 29261 114 16 58 chr1 137161772 137168188 -105496165 - L1PA7 LINE L1 -5 6149 12 23 0 0 0 chr1 137168209 137168232 -105496121 + AT_rich Low_complexity Low_complexity 1 23 0 350 239 77 17 chr1 137168541 137168658 -105495695 + L1MD2 LINE L1 4 127 -6413 6474 248 79 18 chr1 137168669 137173003 -105491350 + L1MD2 LINE L1 397 5433 -1107 2350 143 31 31 chr1 137173004 137173457 -105490896 + L1MB2 LINE L1 5690 6142 -29 23 0 0 0 chr1 137173458 137173481 -105490872 + AT_rich Low_complexity Low_complexity 1 23 0 1134 202 88 9 chr1 137173499 137174017 -105490336 + L1MD2 LINE L1 5421 5984 -652 619 152 0 0 chr1 137174017 137174122 -105490231 - AluSg/x SINE Alu 0 309 205 547 155 0 0 chr1 137174129 137174213 -105490140 - AluSg/x SINE Alu -21 289 206 2040 128 3 0 chr1 137174220 137174510 -105489843 - AluSx SINE Alu -21 291 1 1942 233 55 15 chr1 137174513 137175054 -105489299 + L1MD2 LINE L1 5977 6539 -214 533 232 33 0 chr1 137175061 137175212 -105489141 + L1MD2 LINE L1 6595 6750 -3 339 123 346 0 chr1 137176229 137176310 -105488043 - L1MB1 LINE L1 0 6168 6060 1311 166 0 5 chr1 137176317 137176522 -105487831 - AluJb SINE Alu -8 304 101 3439 167 77 9 chr1 137176522 137177125 -105487228 - L1MB1 LINE L1 -114 6054 5493 1896 174 7 0 chr1 137177125 137177419 -105486934 - AluJb SINE Alu -14 298 3 3439 167 77 9 chr1 137177419 137178021 -105486332 - L1MB1 LINE L1 -675 5493 4774 534 194 35 0 chr1 137178042 137178186 -105486167 - L1MB1 LINE L1 -1538 4608 4460 584 284 58 0 chr1 137178190 137178398 -105485955 - L1MB1 LINE L1 -3333 2813 2594 1198 198 0 0 chr1 137178440 137178678 -105485675 - L1P LINE L1 -2200 3946 3709 357 210 0 20 chr1 137178686 137178786 -105485567 - L1M4 LINE L1 -3127 3605 3508 16239 45 1 1 chr1 137178790 137181560 -105482793 - L1PA4 LINE L1 -6 6149 3370 26357 61 8 2 chr1 137181660 137185241 -105479112 - L1P LINE L1 -2543 3603 2 1275 277 29 34 chr1 137185240 137185892 -105478461 - L1M4 LINE L1 -4747 1916 1285 * 646 327 47 22 chr1 137185965 137186366 -105477987 - L1M4 LINE L1 -5730 933 523 1582 133 0 0 chr1 137187204 137187422 -105476931 + AluSx SINE Alu 1 218 -94 273 321 85 0 chr1 137187923 137188029 -105476324 - L2 LINE L2 -9 3304 3190 815 322 150 13 chr1 137189262 137189750 -105474603 - L2 LINE L2 0 3313 2762 538 283 41 0 chr1 137190075 137190220 -105474133 + L2 LINE L2 2608 2758 -556 297 310 0 0 chr1 137190302 137190389 -105473964 + MLT1J LTR MaLR 95 181 -330 309 155 0 0 chr1 137190454 137190512 -105473841 + CT-rich Low_complexity Low_complexity 1 58 0 366 320 8 0 chr1 137190576 137190704 -105473649 - MLT1J LTR MaLR -132 379 251 1179 151 8 2 chr1 137190707 137199382 -105464971 - ALR/Alpha Satellite centromeric 0 8733 1 860 172 12 4 chr1 137199394 137199998 -105464355 - ALR/Alpha Satellite centromeric 0 608 1 1105 165 6 1 chr1 137200020 137202037 -105462316 - ALR/Alpha Satellite centromeric 0 2026 1 7929 13 0 0 chr1 137202137 137203350 -105461003 + L1HS LINE L1 4941 6153 -2 807 146 0 76 chr1 137203402 137203568 -105460785 + FLAM_C SINE Alu 1 133 0 2400 84 0 3 chr1 137203758 137204066 -105460287 - AluSc SINE Alu -1 308 2 536 109 0 22 chr1 137204489 137204581 -105459772 + L1PA8 LINE L1 6083 6172 0 2244 59 42 10 chr1 137204585 137204873 -105459480 + AluY SINE Alu 1 297 -14 249 33 0 0 chr1 137204992 137205022 -105459331 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 344 308 10 0 chr1 137205036 137205140 -105459213 + CT-rich Low_complexity Low_complexity 2 106 0 258 81 0 0 chr1 137205140 137205177 -105459176 + (CA)n Simple_repeat Simple_repeat 1 37 0 190 324 0 68 chr1 137206539 137206613 -105457740 + MIR3 SINE MIR 11 79 -129 2063 127 3 3 chr1 137207880 137208171 -105456182 + AluSg SINE Alu 1 291 -19 261 0 0 0 chr1 137208171 137208200 -105456153 + (TA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr1 137208434 137208455 -105455898 + AT_rich Low_complexity Low_complexity 1 21 0 544 227 27 0 chr1 137208674 137208784 -105455569 + MER20 DNA MER1_type 1 113 -106 1678 216 28 58 chr1 137208816 137209284 -105455069 - MLT1C LTR MaLR -13 454 1 445 240 70 0 chr1 137209288 137209388 -105454965 + MER20 DNA MER1_type 113 219 0 1280 269 145 13 chr1 137210291 137210890 -105453463 - L1MC4 LINE L1 -139 7903 7226 * 1933 195 68 47 chr1 137210874 137211546 -105452807 - L1MC4 LINE L1 -934 7090 6440 1859 178 0 0 chr1 137212098 137212422 -105451931 + AluJb SINE Alu 1 324 0 558 231 34 4 chr1 137212425 137212598 -105451755 - L1MC4a LINE L1 -513 7295 7159 643 170 15 7 chr1 137212598 137212733 -105451620 - L1MC4 LINE L1 -952 7090 6955 255 261 122 35 chr1 137213253 137213368 -105450985 + MIR SINE MIR 8 132 -130 460 173 0 0 chr1 137213368 137213443 -105450910 + AluJb SINE Alu 199 273 -39 536 286 29 40 chr1 137214103 137214278 -105450075 + MER5B DNA MER1_type 3 175 -3 1440 177 23 39 chr1 137214407 137214712 -105449641 - AluJo SINE Alu 0 312 13 195 42 0 0 chr1 137215191 137215215 -105449138 + (CA)n Simple_repeat Simple_repeat 1 24 0 2293 95 3 0 chr1 137215340 137215645 -105448708 + AluSp SINE Alu 1 306 -7 43175 46 6 1 chr1 137216303 137221921 -105442432 - L1P2 LINE L1 -515 5640 1 611 13 0 0 chr1 137222420 137222495 -105441858 - L1PA3 LINE L1 -2 6153 6079 396 145 108 0 chr1 137222596 137222679 -105441674 - MER94 DNA DNA -41 93 2 771 303 28 12 chr1 137222929 137223180 -105441173 + MIR SINE MIR 8 262 0 1545 169 25 14 chr1 137223771 137224050 -105440303 - AluJo SINE Alu -30 282 1 23 33 0 0 chr1 137225807 137225837 -105438516 + AT_rich Low_complexity Low_complexity 1 30 0 188 312 237 14 chr1 137229066 137229281 -105435072 + L3 LINE CR1 1179 1441 -136 379 333 40 17 chr1 137229872 137230046 -105434307 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr1 137230047 137230069 -105434284 + AT_rich Low_complexity Low_complexity 1 22 0 443 317 154 10 chr1 137230080 137230288 -105434065 - MIR SINE MIR -15 247 10 21 0 0 0 chr1 137230853 137230874 -105433479 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 137232247 137232279 -105432074 + AT_rich Low_complexity Low_complexity 1 32 0 273 207 52 0 chr1 137232501 137232559 -105431794 - MER5A DNA MER1_type -123 66 6 194 238 57 48 chr1 137232831 137232936 -105431417 + L3b LINE CR1 1261 1366 -217 209 205 0 0 chr1 137234867 137234906 -105429447 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr1 137236022 137236050 -105428303 + AT_rich Low_complexity Low_complexity 1 28 0 403 240 45 39 chr1 137237886 137238065 -105426288 + GA-rich Low_complexity Low_complexity 1 180 0 297 135 0 0 chr1 137240338 137240390 -105423963 - L1MB1 LINE L1 -2 6166 6115 329 43 21 0 chr1 137240515 137240562 -105423791 + (CA)n Simple_repeat Simple_repeat 2 49 0 339 280 120 10 chr1 137240806 137241052 -105423301 + LTR48 LTR ERV1 353 542 0 473 17 0 0 chr1 137241331 137241389 -105422964 - L1PA4 LINE L1 -2 6153 6096 192 77 0 0 chr1 137241486 137241512 -105422841 + (CA)n Simple_repeat Simple_repeat 2 27 0 1340 244 21 47 chr1 137241541 137241990 -105422363 + L1MC5 LINE L1 7011 7449 -512 2293 112 0 6 chr1 137241990 137242302 -105422051 - AluSq SINE Alu -3 310 1 1340 244 21 47 chr1 137242302 137242324 -105422029 + L1MC5 LINE L1 7449 7470 -491 1626 169 6 35 chr1 137242680 137242993 -105421360 + AluJo SINE Alu 1 304 -8 349 345 118 13 chr1 137243308 137243546 -105420807 + L2 LINE L2 2109 2371 -943 185 223 272 19 chr1 137243799 137243902 -105420451 + MIR SINE MIR 120 248 -14 524 278 67 33 chr1 137243964 137244144 -105420209 - MIR SINE MIR -45 217 32 2092 190 43 9 chr1 137245117 137245554 -105418799 + MER66A LTR ERV1 27 478 0 279 0 0 0 chr1 137247944 137247975 -105416378 + (CA)n Simple_repeat Simple_repeat 2 32 0 3452 86 11 4 chr1 137248120 137248595 -105415758 + L1PA10 LINE L1 5680 6157 -11 251 298 112 58 chr1 137248880 137249068 -105415285 + L2 LINE L2 3013 3210 -103 7194 26 0 0 chr1 137249619 137250462 -105413891 + L1PA4 LINE L1 5312 6154 -1 477 251 48 74 chr1 137250599 137250830 -105413523 - MER112 DNA MER1_type -6 254 30 23 33 0 0 chr1 137251197 137251227 -105413126 + AT_rich Low_complexity Low_complexity 1 30 0 333 328 66 14 chr1 137251269 137251572 -105412781 + L1ME LINE L1 5563 5884 -280 249 33 0 0 chr1 137251655 137251685 -105412668 + (CA)n Simple_repeat Simple_repeat 1 30 0 521 279 129 37 chr1 137251800 137252234 -105412119 - L1MEd LINE L1 -5193 926 453 216 216 0 0 chr1 137253692 137253743 -105410610 + (CACG)n Simple_repeat Simple_repeat 4 54 0 238 234 35 138 chr1 137254509 137254596 -105409757 + MLT1G1 LTR MaLR 59 153 -437 2039 121 0 52 chr1 137254596 137254903 -105409450 + AluSg SINE Alu 1 291 -19 238 234 35 138 chr1 137254903 137255076 -105409277 + MLT1G1 LTR MaLR 153 292 -298 1590 219 67 2 chr1 137255076 137255477 -105408876 - MER95 LTR ERV -4 427 1 3223 173 14 44 chr1 137255504 137255951 -105408402 - L1 LINE L1 -955 6610 6194 2920 99 52 9 chr1 137255951 137256397 -105407956 - L1PA11 LINE L1 -1 6173 5709 3223 173 14 44 chr1 137256397 137256725 -105407628 - L1 LINE L1 -1371 6194 5858 1960 211 20 28 chr1 137256704 137257529 -105406824 - L1 LINE L1 -3664 3901 3083 * 2328 74 205 135 chr1 137257529 137258071 -105406282 - LTR12 LTR ERV1 -134 580 1 4005 116 19 0 chr1 137258071 137258702 -105405651 - HERV9 LTR ERV1 0 8399 7757 2110 152 91 69 chr1 137258697 137259741 -105404612 - Harlequin LTR ERV1 -3416 4983 840 * 9866 107 18 2 chr1 137259740 137261222 -105403131 - Harlequin LTR ERV1 -5427 2972 1468 1188 115 22 0 chr1 137261220 137261402 -105402951 - LTR12 LTR ERV1 -170 544 359 * 326 235 0 0 chr1 137261402 137261483 -105402870 - LTR30 LTR ERV1 -98 624 544 875 80 131 0 chr1 137261483 137261669 -105402684 - LTR12 LTR ERV1 -437 277 1 665 250 65 0 chr1 137261670 137261886 -105402467 - L1 LINE L1 -4479 3086 2857 5960 101 33 0 chr1 137261887 137263139 -105401214 - L1PA14 LINE L1 -3 6158 4871 8987 156 43 15 chr1 137263222 137264645 -105399708 - L1PA12 LINE L1 0 6168 4657 180 0 0 0 chr1 137264645 137264665 -105399688 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8987 156 43 15 chr1 137264665 137265773 -105398580 - L1PA12 LINE L1 -1511 4657 3582 462 212 8 0 chr1 137265773 137265891 -105398462 - L1PA14 LINE L1 -1258 4888 4770 8945 238 97 58 chr1 137265891 137269374 -105394979 - L1PA14 LINE L1 -1876 4270 598 6798 73 6 1 chr1 137269374 137270824 -105393529 - L1PA6 LINE L1 0 6154 4701 8945 238 97 58 chr1 137270824 137271447 -105392906 - L1PA14 LINE L1 -5548 598 1 279 0 0 0 chr1 137272257 137272288 -105392065 + (TG)n Simple_repeat Simple_repeat 1 31 0 943 216 133 59 chr1 137272762 137273106 -105391247 + MER92A LTR ERV1 2 319 -93 1902 120 41 0 chr1 137273106 137273373 -105390980 + AluSx SINE Alu 3 280 -32 330 26 0 0 chr1 137273374 137273413 -105390940 + (TAA)n Simple_repeat Simple_repeat 2 40 0 943 216 133 59 chr1 137273413 137273441 -105390912 + MER92A LTR ERV1 318 404 -8 1543 203 32 13 chr1 137273615 137273995 -105390358 - MER65C LTR ERV1 0 461 75 387 0 0 0 chr1 137273995 137274038 -105390315 + (T)n Simple_repeat Simple_repeat 1 43 0 27 0 0 0 chr1 137274504 137274531 -105389822 + AT_rich Low_complexity Low_complexity 1 27 0 688 264 26 26 chr1 137274577 137274770 -105389583 - MIR SINE MIR -62 200 8 1999 111 0 0 chr1 137274973 137275235 -105389118 + AluSx SINE Alu 21 282 -30 183 100 0 0 chr1 137276076 137276106 -105388247 + (TTTTTG)n Simple_repeat Simple_repeat 5 34 0 807 241 27 5 chr1 137276114 137276301 -105388052 - MER20 DNA MER1_type -22 197 7 562 330 121 6 chr1 137276676 137277040 -105387313 + L1MEd LINE L1 11 416 -5703 28 29 0 0 chr1 137277104 137277139 -105387214 + AT_rich Low_complexity Low_complexity 1 35 0 449 309 104 17 chr1 137277157 137277503 -105386850 + L1MEd LINE L1 453 828 -5291 249 33 0 0 chr1 137277706 137277736 -105386617 + (TG)n Simple_repeat Simple_repeat 1 30 0 292 348 50 14 chr1 137277791 137278122 -105386231 - L1MC4a LINE L1 -388 5733 5563 23 33 0 0 chr1 137278164 137278194 -105386159 + AT_rich Low_complexity Low_complexity 1 30 0 406 249 49 76 chr1 137278561 137278786 -105385567 + MER112 DNA MER1_type 30 248 -12 22755 36 5 1 chr1 137278929 137282528 -105381825 - L1PA4 LINE L1 -1 6154 2545 1082 167 5 1 chr1 137282628 137284377 -105379976 + ALR/Alpha Satellite centromeric 1 1755 -20 860 180 10 4 chr1 137284399 137285003 -105379350 + ALR/Alpha Satellite centromeric 1 607 -15 1155 152 6 1 chr1 137285015 137288682 -105375671 + ALR/Alpha Satellite centromeric 1 3686 -66 8768 63 6 2 chr1 137288782 137289998 -105374355 - L1P LINE L1 -1332 4814 3595 1605 167 5 0 chr1 137289997 137290438 -105373915 - L1M3f LINE L1 -4421 907 433 * 267 330 0 0 chr1 137290489 137290592 -105373761 - MER89-int LTR ERV1 -1949 5588 5486 239 0 32 0 chr1 137290757 137290788 -105373565 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 259 333 11 11 chr1 137290920 137291010 -105373343 - MER89-int LTR ERV1 -2920 3881 3792 266 301 9 18 chr1 137291845 137291958 -105372395 - MER89-int LTR ERV1 -3847 2954 2843 250 366 7 44 chr1 137292279 137292358 -105371995 - MER89-int LTR ERV1 -4472 4154 4074 2498 49 3 16 chr1 137292358 137292666 -105371687 - AluY SINE Alu -7 304 1 250 366 7 44 chr1 137292666 137292859 -105371494 - MER89-int LTR ERV1 -4552 4074 3892 2301 108 0 0 chr1 137292881 137293178 -105371175 + AluSx SINE Alu 1 297 -15 257 352 20 10 chr1 137294388 137294584 -105369769 - MER89-int LTR ERV1 -5431 1370 1173 243 0 0 0 chr1 137295553 137295580 -105368773 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1199 240 63 29 chr1 137295593 137296005 -105368348 - MER95 LTR ERV -5 426 1 946 242 9 0 chr1 137296061 137296288 -105368065 + MLT1H1 LTR MaLR 327 555 0 21 36 0 0 chr1 137296696 137296724 -105367629 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr1 137296898 137296932 -105367421 + AT_rich Low_complexity Low_complexity 1 34 0 1420 218 203 37 chr1 137296937 137297395 -105366958 + MLT1E1 LTR MaLR 58 652 -2 22 35 0 0 chr1 137297417 137297446 -105366907 + AT_rich Low_complexity Low_complexity 1 29 0 275 292 0 0 chr1 137297489 137297561 -105366792 + MLT1J LTR MaLR 347 418 -93 457 298 87 43 chr1 137298397 137298744 -105365609 - L1MC4a LINE L1 -1846 5962 5579 2433 80 0 0 chr1 137298744 137299045 -105365308 - AluY SINE Alu -10 301 1 457 298 87 43 chr1 137299045 137299260 -105365093 - L1MC4a LINE L1 -2229 5579 5375 386 316 27 21 chr1 137299539 137299726 -105364627 - LTR67 LTR ERVL -368 189 2 1877 258 85 26 chr1 137299860 137300520 -105363833 + MER69 DNA AcHobo 45 743 -1783 1748 232 79 36 chr1 137300609 137301226 -105363127 + LTR48B LTR ERV1 1 644 0 287 335 24 44 chr1 137301723 137301971 -105362382 - HERV16 LTR ERVL -727 4269 4027 952 169 32 10 chr1 137302083 137302310 -105362043 + MLT1C LTR MaLR 1 223 -244 461 200 0 0 chr1 137302308 137302398 -105361955 + MLT1C LTR MaLR 378 467 0 * 457 328 32 23 chr1 137302522 137302830 -105361523 - HERV16 LTR ERVL -1726 4038 3728 881 338 43 9 chr1 137303139 137303697 -105360656 - HERV16 LTR ERVL -1937 3059 2718 460 271 33 62 chr1 137303766 137303976 -105360377 - HERV16 LTR ERVL -2254 2742 2539 276 239 15 15 chr1 137304480 137304547 -105359806 + CT-rich Low_complexity Low_complexity 2 68 0 1881 161 10 3 chr1 137304754 137305053 -105359300 - AluJb SINE Alu -11 301 1 2228 194 48 31 chr1 137305305 137305845 -105358508 - MLT2B3 LTR ERVL -3 551 3 208 261 0 0 chr1 137305899 137305945 -105358408 - L2 LINE L2 -7 3306 3261 516 180 98 16 chr1 137306118 137306240 -105358113 + MLT2F LTR ERVL 7 138 -525 4843 201 19 12 chr1 137306267 137307456 -105356897 + L1 LINE L1 2966 4162 -1984 4785 181 11 7 chr1 137307459 137308565 -105355788 + L1PA16 LINE L1 5056 6166 0 599 125 0 0 chr1 137308577 137308673 -105355680 + MER2 DNA MER2_type 87 182 -163 244 229 0 0 chr1 137309842 137309890 -105354463 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 246 32 0 0 chr1 137310403 137310434 -105353919 + (CA)n Simple_repeat Simple_repeat 1 31 0 204 239 0 0 chr1 137311324 137311370 -105352983 + (TATG)n Simple_repeat Simple_repeat 2 47 0 21 43 0 0 chr1 137311534 137311557 -105352796 + AT_rich Low_complexity Low_complexity 1 23 0 258 32 0 0 chr1 137311842 137311873 -105352480 + (TTA)n Simple_repeat Simple_repeat 1 31 0 398 250 89 0 chr1 137311873 137311985 -105352368 + MLT1J LTR MaLR 80 201 -310 378 235 25 8 chr1 137312402 137312521 -105351832 + MLT2F LTR ERVL 543 663 0 23 33 0 0 chr1 137313227 137313257 -105351096 + AT_rich Low_complexity Low_complexity 1 30 0 187 233 0 0 chr1 137313263 137313306 -105351047 - MIR SINE MIR -59 203 161 345 311 33 71 chr1 137313323 137313506 -105350847 + MIR SINE MIR 18 193 -69 405 298 39 0 chr1 137313565 137313669 -105350684 + L2 LINE L2 3204 3311 -2 23 0 0 0 chr1 137314340 137314363 -105349990 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 137314420 137314443 -105349910 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr1 137314563 137314596 -105349757 + (CA)n Simple_repeat Simple_repeat 2 34 0 645 294 77 13 chr1 137314771 137315006 -105349347 - MIR SINE MIR -11 251 2 2109 141 30 28 chr1 137315040 137315403 -105348950 + THE1B LTR MaLR 1 364 0 571 132 99 0 chr1 137315559 137315650 -105348703 + AluSq/x SINE Alu 9 108 -204 32 43 0 0 chr1 137316007 137316053 -105348300 + AT_rich Low_complexity Low_complexity 1 46 0 400 316 60 0 chr1 137316329 137316497 -105347856 - L1ME3A LINE L1 -289 5881 5704 211 296 99 0 chr1 137316803 137316874 -105347479 + L2 LINE L2 3236 3313 0 309 189 160 66 chr1 137317248 137317354 -105346999 - MER63 DNA MER1_type -93 743 2 2182 112 14 0 chr1 137318083 137318377 -105345976 - AluSc SINE Alu -11 298 1 400 327 67 40 chr1 137318690 137319036 -105345317 - L1MEd LINE L1 -5679 440 86 181 283 17 17 chr1 137319592 137319652 -105344701 - L2 LINE L2 -9 3263 3204 14554 29 0 0 chr1 137320101 137322621 -105341732 + L1PA3 LINE L1 3626 6155 0 226 67 44 0 chr1 137322646 137322691 -105341662 + A-rich Low_complexity Low_complexity 2 48 0 608 189 34 34 chr1 137322798 137322973 -105341380 - L1MB8 LINE L1 0 6178 6004 725 50 118 12 chr1 137323601 137323941 -105340412 + (CATTT)n Simple_repeat Simple_repeat 1 376 0 708 165 0 0 chr1 137324846 137324961 -105339392 - FLAM_C SINE Alu -18 115 1 1206 135 0 16 chr1 137325327 137325520 -105338833 - MER30B DNA MER1_type 0 190 1 1337 162 132 0 chr1 137325641 137325907 -105338446 - AluJo SINE Alu 0 302 2 338 197 15 0 chr1 137326384 137326450 -105337903 + MIR3 SINE MIR 95 161 -47 205 293 0 43 chr1 137327180 137327296 -105337057 + (CGG)n Simple_repeat Simple_repeat 3 113 0 21714 58 4 10 chr1 137328475 137331500 -105332853 - L1P LINE L1 -1656 4490 1486 1237 238 210 51 chr1 137331638 137331817 -105332536 + HAL1 LINE L1 153 302 -2205 2510 66 0 10 chr1 137331817 137332121 -105332232 + AluY SINE Alu 1 301 -10 1237 238 210 51 chr1 137332121 137332741 -105331612 + HAL1 LINE L1 302 1079 -1428 199 293 57 19 chr1 137332815 137332921 -105331432 + L2 LINE L2 3150 3259 -54 488 283 0 0 chr1 137333947 137334060 -105330293 - MER81 DNA DNA -1 113 1 2359 84 0 7 chr1 137334139 137334438 -105329915 - AluY SINE Alu -14 297 1 2451 67 0 7 chr1 137334455 137334754 -105329599 - AluY SINE Alu -1 310 14 215 303 128 18 chr1 137334891 137335000 -105329353 - MIR SINE MIR -130 132 12 25 31 0 0 chr1 137335183 137335215 -105329138 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr1 137335723 137335750 -105328603 + AT_rich Low_complexity Low_complexity 1 27 0 943 259 120 68 chr1 137335884 137336351 -105328002 + LTR16C LTR ERVL 1 491 0 600 347 50 57 chr1 137336612 137337036 -105327317 - L2 LINE L2 0 3272 2852 431 233 52 52 chr1 137337138 137337331 -105327022 + AluJb SINE Alu 50 242 -70 857 168 28 0 chr1 137338341 137338508 -105325845 + FRAM SINE Alu 1 169 0 250 200 14 0 chr1 137339360 137339430 -105324923 + AluSp/q SINE Alu 163 233 -70 186 167 0 0 chr1 137340548 137340584 -105323769 + A-rich Low_complexity Low_complexity 1 36 0 2406 100 0 3 chr1 137342233 137342544 -105321809 + AluSx SINE Alu 1 310 -2 802 290 23 5 chr1 137342915 137343136 -105321217 + MIR SINE MIR 12 236 -26 622 132 9 9 chr1 137343892 137344006 -105320347 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 255 125 0 0 chr1 137344150 137344190 -105320163 + (T)n Simple_repeat Simple_repeat 1 40 0 19278 147 46 20 chr1 137345129 137348291 -105316062 + L1MA1 LINE L1 6 3273 -4292 2048 134 23 0 chr1 137348291 137348597 -105315756 + AluSp SINE Alu 1 313 0 19278 147 46 20 chr1 137348597 137349237 -105315116 + L1MA1 LINE L1 3273 3895 -3670 12216 167 28 11 chr1 137349357 137349413 -105314940 + L1MA1 LINE L1 3863 3917 -3804 189 0 0 0 chr1 137349413 137349434 -105314919 + (GA)n Simple_repeat Simple_repeat 2 22 0 12216 167 28 11 chr1 137349434 137352212 -105312141 + L1MA1 LINE L1 3917 6781 -940 2425 89 3 0 chr1 137352212 137352515 -105311838 + AluSp SINE Alu 1 304 -9 12216 167 28 11 chr1 137352515 137353472 -105310881 + L1MA1 LINE L1 6781 7721 0 1523 195 15 89 chr1 137353528 137353922 -105310431 + MLT1A1 LTR MaLR 1 365 0 306 297 11 0 chr1 137354683 137354774 -105309579 + L1ME2 LINE L1 6064 6155 -9 21 36 0 0 chr1 137355360 137355388 -105308965 + AT_rich Low_complexity Low_complexity 1 28 0 1293 71 0 2 chr1 137355392 137355645 -105308708 - AluY SINE Alu 0 310 1 233 195 0 0 chr1 137356724 137356765 -105307588 - 5S rRNA rRNA -80 41 1 327 332 122 52 chr1 137357200 137357738 -105306615 - L2 LINE L2 0 3272 2694 410 111 0 42 chr1 137357796 137357868 -105306485 + MADE1 DNA Mariner 2 70 -10 451 339 124 53 chr1 137357879 137358482 -105305871 - L2 LINE L2 -725 2589 2030 2131 113 28 0 chr1 137358482 137358773 -105305580 + AluSg SINE Alu 1 299 -11 451 339 124 53 chr1 137358773 137359298 -105305055 - L2 LINE L2 -1284 2030 1381 7766 42 1 2 chr1 137359616 137361338 -105303015 + L1PA5 LINE L1 4434 6154 0 340 262 55 94 chr1 137361721 137361958 -105302395 + HERV16 LTR ERVL 2706 2871 -2614 300 338 25 25 chr1 137362073 137362230 -105302123 + HERV16 LTR ERVL 3419 3575 -2189 * 493 276 60 40 chr1 137362228 137362427 -105301926 + HERV16 LTR ERVL 875 1077 -3919 293 314 50 33 chr1 137362658 137362779 -105301574 + HERV16 LTR ERVL 1345 1467 -3529 269 259 29 78 chr1 137362912 137363117 -105301236 - L1M4 LINE L1 -2159 3987 3793 588 262 109 31 chr1 137363129 137363549 -105300804 - HAL1 LINE L1 -340 2167 1715 647 235 110 31 chr1 137363669 137363924 -105300429 - HAL1 LINE L1 -697 1810 1536 779 290 93 11 chr1 137363995 137364530 -105299823 - HAL1 LINE L1 -1188 1319 741 704 229 7 0 chr1 137364717 137364861 -105299492 + MER45A DNA AcHobo 34 178 0 263 298 171 13 chr1 137364891 137365049 -105299304 - HAL1 LINE L1 -2019 488 306 257 293 86 50 chr1 137365619 137365759 -105298594 - MIR SINE MIR -108 154 10 2608 102 8 0 chr1 137366150 137366511 -105297842 - THE1B LTR MaLR 0 364 1 9409 101 5 118 chr1 137366511 137367593 -105296760 - THE1B-int LTR MaLR 0 1580 778 207 0 0 0 chr1 137367593 137367616 -105296737 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9409 101 5 118 chr1 137367616 137368314 -105296039 - THE1B-int LTR MaLR -802 778 2 2536 125 11 0 chr1 137368315 137368675 -105295678 - THE1B LTR MaLR 0 364 1 1912 143 31 3 chr1 137368700 137368986 -105295367 - AluSx SINE Alu -18 294 1 22 0 0 0 chr1 137369655 137369677 -105294676 + AT_rich Low_complexity Low_complexity 1 22 0 2287 113 0 6 chr1 137370137 137370448 -105293905 - AluSc SINE Alu 0 309 1 915 317 75 20 chr1 137371209 137371663 -105292690 - L2 LINE L2 0 3313 2835 2521 209 64 73 chr1 137371764 137372655 -105291698 + L1ME1 LINE L1 5280 6162 -4 189 0 0 0 chr1 137372821 137372842 -105291511 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2208 73 9 38 chr1 137372858 137373175 -105291178 + AluY SINE Alu 1 308 -3 272 143 20 0 chr1 137373723 137373772 -105290581 + LTR47A LTR ERVL 1 50 -402 594 159 37 148 chr1 137373773 137373962 -105290391 + LTR47A LTR ERVL 173 340 -112 2600 172 110 14 chr1 137373989 137374553 -105289800 - MER72 LTR ERV1 0 722 105 417 325 42 11 chr1 137374705 137374896 -105289457 - HERVL LTR ERVL -3191 2463 2267 559 317 84 32 chr1 137376207 137376554 -105287799 + L2 LINE L2 2451 2815 -499 22 35 0 0 chr1 137376992 137377021 -105287332 + AT_rich Low_complexity Low_complexity 1 29 0 4234 164 23 49 chr1 137377154 137377716 -105286637 + L1MB7 LINE L1 5160 5686 -498 2257 74 0 3 chr1 137377716 137378041 -105286312 + AluY SINE Alu 1 324 0 4234 164 23 49 chr1 137378041 137378511 -105285842 + L1MB7 LINE L1 5686 6167 -17 624 298 55 20 chr1 137378514 137378860 -105285493 + L1MEd LINE L1 896 1253 -4866 560 281 162 7 chr1 137378863 137379166 -105285187 + L1MEd LINE L1 1349 1698 -4612 2410 85 0 3 chr1 137379195 137379502 -105284851 + AluY SINE Alu 1 306 -5 1659 166 11 18 chr1 137379586 137379870 -105284483 - AluJo SINE Alu -30 282 1 22 35 0 0 chr1 137379882 137379911 -105284442 + AT_rich Low_complexity Low_complexity 1 29 0 1767 113 8 4 chr1 137380278 137380525 -105283828 + AluSx SINE Alu 44 291 -21 510 208 108 77 chr1 137380569 137380786 -105283567 + L1MEd LINE L1 2434 2662 -3467 2428 40 40 13 chr1 137380786 137381087 -105283266 - AluY SINE Alu -2 309 1 510 208 108 77 chr1 137381087 137381129 -105283224 + L1MEd LINE L1 2662 2701 -3428 572 236 231 20 chr1 137383315 137383514 -105280839 - MIR SINE MIR 0 262 22 183 356 25 25 chr1 137383554 137383672 -105280681 + MIR3 SINE MIR 87 204 -4 238 195 0 0 chr1 137384506 137384547 -105279806 + L2 LINE L2 3263 3303 -10 548 219 14 41 chr1 137384836 137384982 -105279371 + AluJo SINE Alu 1 142 -170 1615 180 10 27 chr1 137384982 137385282 -105279071 + AluJo SINE Alu 18 312 0 1421 84 0 75 chr1 137385323 137385549 -105278804 + LTR12 LTR ERV1 3 211 -503 694 108 0 0 chr1 137385540 137385642 -105278711 + LTR12 LTR ERV1 613 714 0 * 537 333 5 20 chr1 137388529 137388724 -105275629 - MIR3 SINE MIR -2 206 15 286 224 54 82 chr1 137388794 137388941 -105275412 + L1ME LINE L1 5301 5443 -678 348 286 166 14 chr1 137388969 137389186 -105275167 + L1ME LINE L1 5512 5761 -360 1139 135 14 0 chr1 137389407 137389629 -105274724 - L1M4 LINE L1 -942 5204 4980 333 319 90 57 chr1 137389630 137389909 -105274444 - L1MEd LINE L1 -5234 885 598 246 296 111 0 chr1 137391400 137391481 -105272872 - MIR SINE MIR -124 138 49 199 304 29 14 chr1 137391496 137391565 -105272788 + L2 LINE L2 3226 3295 -18 878 257 215 14 chr1 137394493 137395081 -105269272 - L2 LINE L2 -90 3223 2535 1773 210 43 10 chr1 137395146 137395542 -105268811 + L1MC4a LINE L1 5497 5905 -1903 2037 177 70 0 chr1 137395556 137395941 -105268412 - MER47B DNA MER2_type 0 418 7 856 128 0 0 chr1 137395986 137396103 -105268250 - AluSp SINE Alu -196 117 1 834 182 0 31 chr1 137396108 137396267 -105268086 - FRAM SINE Alu -21 155 2 1981 119 0 0 chr1 137397111 137397408 -105266945 - AluSq SINE Alu 0 311 15 254 196 54 0 chr1 137397540 137397596 -105266757 - L3 LINE CR1 -13 1564 1506 1849 120 13 60 chr1 137397702 137398018 -105266335 + AluJb SINE Alu 1 301 -11 457 273 87 13 chr1 137399467 137399617 -105264736 + MIR3 SINE MIR 20 180 -28 * 1593 256 112 21 chr1 137399608 137400248 -105264105 + L2 LINE L2 2382 3119 -194 2835 3 0 3 chr1 137400248 137400557 -105263796 + AluYa5 SINE Alu 1 308 -3 1593 256 112 21 chr1 137400557 137400772 -105263581 + L2 LINE L2 3119 3313 0 215 378 161 4 chr1 137400883 137401113 -105263240 + L2 LINE L2 2566 2831 -483 435 202 0 11 chr1 137402870 137402959 -105261394 + L1ME3A LINE L1 6049 6136 -34 1372 240 251 27 chr1 137403497 137403669 -105260684 + HAL1 LINE L1 155 287 -2220 2581 61 0 10 chr1 137403669 137403979 -105260374 + AluY SINE Alu 1 307 -4 1372 240 251 27 chr1 137403979 137404480 -105259873 + HAL1 LINE L1 287 979 -1528 1926 50 0 29 chr1 137405339 137405581 -105258772 - AluY SINE Alu -76 235 1 475 161 11 43 chr1 137405581 137405674 -105258679 + L1MC4a LINE L1 6404 6493 -1315 26 0 0 0 chr1 137407258 137407284 -105257069 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 137408518 137408539 -105255814 + AT_rich Low_complexity Low_complexity 1 21 0 645 175 158 0 chr1 137409035 137409218 -105255135 + L1MC4a LINE L1 6262 6473 -1335 212 148 115 33 chr1 137409434 137409495 -105254858 - MIR SINE MIR -78 184 119 213 317 99 0 chr1 137410936 137411037 -105253316 + MIR SINE MIR 34 144 -118 17414 23 2 0 chr1 137413358 137415518 -105248835 + L1P1 LINE L1 3374 5538 -617 535 275 52 26 chr1 137416248 137416441 -105247912 + MIR SINE MIR 46 243 -19 196 139 0 0 chr1 137416409 137416445 -105247908 + L2 LINE L2 3216 3251 -21 * 384 77 0 0 chr1 137417173 137417225 -105247128 + (TG)n Simple_repeat Simple_repeat 2 53 0 862 255 14 9 chr1 137417283 137417499 -105246854 - MIR SINE MIR -44 218 2 1247 119 60 0 chr1 137417609 137417810 -105246543 + MER20 DNA MER1_type 2 214 -5 182 179 18 0 chr1 137418733 137418789 -105245564 + (TA)n Simple_repeat Simple_repeat 1 57 0 425 215 7 0 chr1 137418828 137418972 -105245381 + (TA)n Simple_repeat Simple_repeat 2 146 0 316 317 186 60 chr1 137419058 137419257 -105245096 + HAL1 LINE L1 23 246 -2261 1329 182 188 12 chr1 137419725 137420071 -105244282 - L1MC4a LINE L1 -288 7520 7114 700 283 0 11 chr1 137420578 137420765 -105243588 - MIR SINE MIR -68 194 10 250 299 12 66 chr1 137420863 137421030 -105243323 - MIR SINE MIR -45 217 60 254 274 14 14 chr1 137421193 137421266 -105243087 - MER113 DNA MER1_type? -4 517 445 2266 110 0 16 chr1 137421391 137421708 -105242645 + AluSx SINE Alu 1 312 0 290 336 55 8 chr1 137421945 137422073 -105242280 + L2 LINE L2 3139 3272 0 1683 167 31 7 chr1 137424565 137424853 -105239500 + AluJo SINE Alu 1 295 -17 22 25 0 25 chr1 137424853 137424873 -105239480 + AT_rich Low_complexity Low_complexity 1 20 -19 2320 99 0 16 chr1 137424873 137425187 -105239166 + AluY SINE Alu 1 309 -2 22 25 0 25 chr1 137425187 137425206 -105239147 + AT_rich Low_complexity Low_complexity 20 39 0 592 242 57 53 chr1 137425270 137425396 -105238957 + MIR SINE MIR 2 131 -131 1655 175 52 3 chr1 137425396 137425687 -105238666 - AluSx SINE Alu -7 305 1 592 242 57 53 chr1 137425687 137425787 -105238566 + MIR SINE MIR 131 229 -33 193 233 67 17 chr1 137425859 137425919 -105238434 - MIR3 SINE MIR -49 159 97 181 223 138 11 chr1 137426264 137426358 -105237995 - L2 LINE L2 -316 2956 2851 1653 155 72 17 chr1 137426641 137426931 -105237422 - AluJb SINE Alu -6 306 1 599 229 115 22 chr1 137427169 137427393 -105236960 - MIR SINE MIR -13 249 4 1922 139 13 16 chr1 137428190 137428493 -105235860 + AluJo SINE Alu 5 306 -6 219 241 19 0 chr1 137429123 137429177 -105235176 - MIR SINE MIR -119 143 89 3355 149 23 69 chr1 137429409 137429777 -105234576 + L1MB7 LINE L1 5357 5681 -503 2306 74 0 3 chr1 137429777 137430090 -105234263 + AluY SINE Alu 1 312 0 3355 149 23 69 chr1 137430090 137430412 -105233941 + L1MB7 LINE L1 5681 6016 -168 652 283 158 6 chr1 137430723 137431298 -105233055 + L1MEc LINE L1 1119 1792 -4604 2348 85 0 3 chr1 137431319 137431613 -105232740 + AluY SINE Alu 1 293 -18 1851 133 18 4 chr1 137432517 137432795 -105231558 - AluSx SINE Alu -2 310 29 2115 102 0 0 chr1 137434418 137434683 -105229670 + AluSx SINE Alu 1 265 -47 699 195 118 0 chr1 137434738 137434907 -105229446 - MER5A DNA MER1_type 0 189 1 229 204 0 0 chr1 137434927 137434971 -105229382 + MIR3 SINE MIR 158 201 -7 195 42 0 0 chr1 137436221 137436245 -105228108 + (AGGGGG)n Simple_repeat Simple_repeat 4 27 0 1054 84 0 0 chr1 137436463 137436594 -105227759 - AluSc SINE Alu -177 132 2 674 339 111 7 chr1 137436624 137437076 -105227277 - L2 LINE L2 -609 2705 2207 964 272 122 43 chr1 137437311 137437815 -105226538 + Charlie8 DNA MER1_type 1 532 -1885 310 247 157 51 chr1 137439224 137439402 -105224951 + L2 LINE L2 3075 3271 -1 362 279 170 45 chr1 137439488 137439865 -105224488 - L2 LINE L2 -19 3253 2830 2365 99 7 0 chr1 137442564 137442868 -105221485 + AluSq SINE Alu 1 306 -7 2172 199 103 76 chr1 137443166 137443863 -105220490 + L1MC4a LINE L1 7093 7808 0 191 376 77 17 chr1 137444182 137444299 -105220054 + L2 LINE L2 3100 3223 -49 261 214 95 0 chr1 137444433 137444517 -105219836 - MIR3 SINE MIR -9 199 108 22 0 0 0 chr1 137445389 137445411 -105218942 + AT_rich Low_complexity Low_complexity 1 22 0 396 276 60 15 chr1 137446278 137446412 -105217941 + MIR3 SINE MIR 20 159 -49 1405 256 117 17 chr1 137446419 137447264 -105217089 + L2 LINE L2 2382 3313 0 2116 109 13 13 chr1 137448958 137449260 -105215093 + AluSx SINE Alu 1 302 -10 270 155 232 52 chr1 137449348 137449503 -105214850 + L1ME4a LINE L1 5826 6008 -113 183 162 0 0 chr1 137449934 137449971 -105214382 + A-rich Low_complexity Low_complexity 1 37 0 766 243 50 38 chr1 137450420 137450659 -105213694 + MIR SINE MIR 2 243 -19 208 0 0 0 chr1 137450853 137450876 -105213477 + (TTTA)n Simple_repeat Simple_repeat 2 136 0 2104 137 0 0 chr1 137450876 137451161 -105213192 - AluSx SINE Alu -24 288 1 433 280 98 18 chr1 137451492 137451722 -105212631 + L1MC5 LINE L1 7312 7666 -376 368 156 23 39 chr1 137451985 137452113 -105212240 + GA-rich Low_complexity Low_complexity 2 127 0 420 152 11 104 chr1 137452171 137452281 -105212072 + L1ME LINE L1 5672 5771 -397 350 219 16 0 chr1 137452281 137452345 -105212008 - MER81 DNA DNA -49 65 1 422 319 96 15 chr1 137452500 137452760 -105211593 + L1MEc LINE L1 867 1147 -5460 1420 197 35 0 chr1 137452796 137453055 -105211298 + AluJo SINE Alu 42 309 -3 800 101 0 0 chr1 137453125 137453271 -105211082 - AluSg/x SINE Alu 0 332 187 1800 115 0 0 chr1 137453271 137453505 -105210848 - AluSx SINE Alu -78 234 1 292 248 119 39 chr1 137453505 137453704 -105210649 + L1MEc LINE L1 1150 1546 -5061 673 209 34 47 chr1 137453884 137454032 -105210321 + FRAM SINE Alu 1 146 -30 315 0 0 0 chr1 137454036 137454071 -105210282 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 333 198 43 78 chr1 137454081 137454197 -105210156 + L1MEc LINE L1 1540 1651 -4777 * 1109 191 35 23 chr1 137454191 137454448 -105209905 + L1ME3A LINE L1 5906 6165 -5 242 271 17 0 chr1 137456328 137456387 -105207966 - MER5B DNA MER1_type -62 116 57 229 179 26 77 chr1 137456389 137456408 -105207945 - L1MA10 LINE L1 -1 6333 6315 1455 195 48 90 chr1 137456408 137456885 -105207468 - L1ME1 LINE L1 -5 6161 5705 2092 180 31 74 chr1 137456887 137457403 -105206950 - MLT1D LTR MaLR -11 494 1 1922 208 43 29 chr1 137457403 137458046 -105206307 - L1ME1 LINE L1 -458 5708 5055 2050 137 3 0 chr1 137459300 137459593 -105204760 - AluSx SINE Alu -18 294 1 1840 142 19 58 chr1 137459606 137459931 -105204422 - AluJo SINE Alu 0 312 1 580 272 19 19 chr1 137459931 137460093 -105204260 + MIR SINE MIR 101 262 0 439 272 66 0 chr1 137460544 137460680 -105203673 - MIR3 SINE MIR -3 205 61 607 128 0 0 chr1 137460948 137461034 -105203319 - AluJo/FRAM SINE Alu -15 297 212 523 118 0 0 chr1 137461037 137461105 -105203248 - AluJo/FRAM SINE Alu -34 278 211 1488 213 4 0 chr1 137461107 137461384 -105202969 - AluJo SINE Alu -34 278 1 1637 176 22 31 chr1 137461580 137461898 -105202455 + L1ME3A LINE L1 5822 6136 -34 901 132 0 22 chr1 137463689 137463825 -105200528 - L1PA15 LINE L1 -1 6164 6032 521 225 26 104 chr1 137464286 137464517 -105199836 - MIR SINE MIR -13 249 37 2389 101 0 0 chr1 137464885 137465193 -105199160 - AluSx SINE Alu -4 308 1 601 298 22 44 chr1 137465336 137465564 -105198789 - MIR SINE MIR -27 235 13 185 250 67 77 chr1 137466811 137466832 -105197521 - MIR SINE MIR -14 248 228 2100 118 10 3 chr1 137466832 137467129 -105197224 + AluSx SINE Alu 12 310 -2 185 250 67 77 chr1 137467129 137467211 -105197142 - MIR SINE MIR -34 228 146 196 308 0 0 chr1 137470875 137470927 -105193426 + L2 LINE L2 3256 3307 -6 334 150 0 17 chr1 137471260 137471320 -105193033 - L2 LINE L2 0 3313 3255 364 232 32 53 chr1 137473105 137473200 -105191153 + MIR SINE MIR 45 137 -71 955 170 88 0 chr1 137473218 137473377 -105190976 + FAM SINE Alu 1 173 -2 807 21 10 0 chr1 137473597 137473694 -105190659 + L1PA2 LINE L1 1 98 -6048 * 38583 30 25 2 chr1 137473661 137479106 -105185247 + L1PA2 LINE L1 578 6155 0 287 25 25 0 chr1 137479225 137479265 -105185088 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 2455 70 3 3 chr1 137479578 137479877 -105184476 - AluSp SINE Alu -14 299 1 881 209 0 19 chr1 137479882 137480040 -105184313 - FRAM SINE Alu -11 155 1 593 186 126 54 chr1 137480182 137480349 -105184004 - MIR3 SINE MIR -7 201 23 393 291 55 36 chr1 137480969 137481134 -105183219 + MER5A DNA MER1_type 22 189 0 600 215 39 127 chr1 137481138 137481273 -105183080 - MER112 DNA MER1_type -1 259 160 1902 173 0 3 chr1 137481273 137481580 -105182773 + AluSx SINE Alu 3 308 -4 600 215 39 127 chr1 137481580 137481728 -105182625 - MER112 DNA MER1_type -100 160 1 219 69 0 0 chr1 137481873 137481902 -105182451 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 7596 193 45 43 chr1 137483674 137483751 -105180602 + L1MC4 LINE L1 6224 6299 -1743 1590 202 104 44 chr1 137483751 137484182 -105180171 + MSTB2 LTR MaLR 1 457 0 7596 193 45 43 chr1 137484182 137484312 -105180041 + L1MC4 LINE L1 6299 6427 -1615 2408 70 0 22 chr1 137484312 137484625 -105179728 - AluY SINE Alu -5 306 1 7596 193 45 43 chr1 137484625 137486226 -105178127 + L1MC4 LINE L1 6427 8037 -5 238 369 0 0 chr1 137486624 137486708 -105177645 + L2 LINE L2 3189 3272 0 2236 112 0 6 chr1 137486808 137487121 -105177232 + AluSx SINE Alu 1 311 -1 2559 56 0 0 chr1 137487484 137487786 -105176567 - AluY SINE Alu -8 303 2 2819 132 29 5 chr1 137487974 137488390 -105175963 + MSTB LTR MaLR 1 426 0 920 229 62 29 chr1 137490641 137490881 -105173472 - MIR SINE MIR 0 262 15 668 289 60 4 chr1 137490940 137491175 -105173178 - MIR SINE MIR -1 261 14 195 308 51 13 chr1 137492059 137492137 -105172216 + L2 LINE L2 3186 3266 -6 2272 93 3 16 chr1 137492484 137492834 -105171519 + AluSp SINE Alu 1 313 0 187 269 92 78 chr1 137493593 137493734 -105170619 + L2 LINE L2 3161 3303 -10 300 324 150 27 chr1 137495025 137495392 -105168961 + L2 LINE L2 2560 2971 -343 298 230 122 0 chr1 137495444 137495518 -105168835 - Tigger8 DNA MER2_type -317 349 267 1338 245 172 21 chr1 137495645 137496081 -105168272 + MLT1J LTR MaLR 3 504 -7 1098 277 135 41 chr1 137496088 137496630 -105167723 + Tigger8 DNA MER2_type 66 658 -8 301 129 171 57 chr1 137496717 137496787 -105167566 + MER116 DNA Mariner 3 80 0 234 303 92 65 chr1 137497188 137497449 -105166904 + L2 LINE L2 2303 2570 -744 207 0 0 0 chr1 137497449 137497472 -105166881 + (T)n Simple_repeat Simple_repeat 1 23 0 1713 172 24 0 chr1 137497751 137498042 -105166311 - AluJo SINE Alu -14 298 1 7092 138 32 107 chr1 137498910 137500783 -105163570 + pTR5 LTR ERV1 75 2438 0 408 330 92 44 chr1 137501246 137501519 -105162834 - L2 LINE L2 0 3272 2987 309 218 128 0 chr1 137501771 137501849 -105162504 - MER5A DNA MER1_type -92 97 10 1811 151 0 37 chr1 137501866 137502165 -105162188 + AluJo SINE Alu 1 288 -24 1639 110 50 0 chr1 137502313 137502532 -105161821 - MER30 DNA MER1_type 0 230 1 875 229 0 17 chr1 137502541 137502720 -105161633 - MER5B DNA MER1_type -2 176 1 232 321 18 0 chr1 137502739 137502795 -105161558 - L2 LINE L2 -692 2622 2566 787 220 92 44 chr1 137502918 137502985 -105161368 + MIR SINE MIR 1 63 -199 231 61 0 0 chr1 137502985 137503018 -105161335 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 435 19 0 0 chr1 137503017 137503069 -105161284 + (GA)n Simple_repeat Simple_repeat 1 52 0 787 220 92 44 chr1 137503018 137503251 -105161102 + MIR SINE MIR 63 262 0 495 259 161 0 chr1 137504001 137504144 -105160209 - MIR SINE MIR -78 184 19 2366 75 0 10 chr1 137505599 137505904 -105158449 + AluY SINE Alu 2 303 -8 377 283 64 23 chr1 137506359 137506532 -105157821 - MIR SINE MIR -46 216 37 398 161 15 44 chr1 137507001 137507138 -105157215 + GA-rich Low_complexity Low_complexity 2 134 0 330 274 42 0 chr1 137507855 137507950 -105156403 - L2 LINE L2 -3 3269 3171 562 135 15 68 chr1 137508299 137508432 -105155921 + L1MB8 LINE L1 6053 6178 0 445 313 23 15 chr1 137509689 137509820 -105154533 - MIR3 SINE MIR -71 137 6 1660 176 3 7 chr1 137510190 137510479 -105153874 + AluJb SINE Alu 1 288 -24 554 257 98 16 chr1 137510698 137510881 -105153472 + MLT1K LTR MaLR 345 542 -46 849 182 0 0 chr1 137510885 137511017 -105153336 + FLAM_C SINE Alu 1 132 -1 246 327 45 45 chr1 137511373 137511398 -105152955 + L2 LINE L2 3199 3223 -90 2238 123 0 3 chr1 137511398 137511708 -105152645 + AluSg SINE Alu 1 309 -1 246 327 45 45 chr1 137511708 137511792 -105152561 + L2 LINE L2 3222 3308 -5 355 289 144 50 chr1 137514011 137514288 -105150065 - L2 LINE L2 -945 2369 2067 211 269 0 19 chr1 137514952 137515004 -105149349 - L2 LINE L2 -23 3249 3199 281 233 0 87 chr1 137515225 137515328 -105149025 - MIR SINE MIR -12 250 157 680 332 20 4 chr1 137515330 137515574 -105148779 + MIR SINE MIR 1 248 -14 465 240 41 55 chr1 137515579 137515725 -105148628 - MIR SINE MIR -106 156 13 880 200 53 42 chr1 137516005 137516245 -105148108 + MIR SINE MIR 7 249 -13 2159 121 16 0 chr1 137516248 137516553 -105147800 - AluSx SINE Alu -2 310 1 198 103 0 0 chr1 137516681 137516710 -105147643 + (CA)n Simple_repeat Simple_repeat 2 30 0 568 181 181 0 chr1 137516714 137516847 -105147506 + MER112 DNA MER1_type 94 250 -10 2473 46 0 20 chr1 137517341 137517645 -105146708 + AluY SINE Alu 1 298 -13 716 215 75 33 chr1 137517647 137517758 -105146595 + L1MC5 LINE L1 7703 7808 -153 2823 3 0 0 chr1 137517758 137518059 -105146294 + AluYa5 SINE Alu 1 301 -10 716 215 75 33 chr1 137518059 137518161 -105146192 + L1MC5 LINE L1 7808 7925 -36 2114 252 97 44 chr1 137518232 137519172 -105145181 + HAL1b LINE L1 205 1194 -154 2390 254 197 15 chr1 137519225 137520754 -105143599 + L2 LINE L2 1491 3313 0 467 200 0 0 chr1 137520764 137520864 -105143489 + HAL1b LINE L1 1249 1348 0 1870 159 7 0 chr1 137521255 137521544 -105142809 + AluSx SINE Alu 1 291 -21 1972 133 7 3 chr1 137522472 137522774 -105141579 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr1 137523254 137523277 -105141076 + AT_rich Low_complexity Low_complexity 1 23 0 2127 125 0 7 chr1 137523534 137523831 -105140522 - AluSx SINE Alu -17 295 1 245 303 73 73 chr1 137524069 137524344 -105140009 - L2 LINE L2 -251 3021 2746 851 57 0 0 chr1 137525295 137525401 -105138952 - AluY SINE Alu -6 305 200 1708 133 108 7 chr1 137525403 137525682 -105138671 - AluSg SINE Alu -3 307 1 320 326 63 0 chr1 137526082 137526177 -105138176 + L2 LINE L2 3134 3234 -38 741 262 19 60 chr1 137526632 137526899 -105137454 + MER112 DNA MER1_type 1 256 0 765 194 23 0 chr1 137526987 137527116 -105137237 + FLAM_A SINE Alu 1 132 -1 1880 136 16 26 chr1 137527512 137527821 -105136532 + AluJo SINE Alu 1 306 -6 975 212 62 161 chr1 137528298 137528583 -105135770 + L2 LINE L2 2827 3038 -275 1833 134 0 56 chr1 137528583 137528904 -105135449 + AluJo SINE Alu 1 303 -9 975 212 62 161 chr1 137528904 137529146 -105135207 + L2 LINE L2 3038 3302 -11 213 39 0 0 chr1 137529151 137529177 -105135176 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1817 122 32 55 chr1 137529249 137529560 -105134793 - AluSx SINE Alu -8 304 1 1715 84 0 0 chr1 137530070 137530284 -105134069 + AluSp SINE Alu 88 301 -12 2340 88 0 7 chr1 137531336 137531633 -105132720 + AluSc SINE Alu 1 295 -14 22 0 0 0 chr1 137531633 137531655 -105132698 + AT_rich Low_complexity Low_complexity 1 22 0 194 135 0 27 chr1 137532161 137532198 -105132155 - L2 LINE L2 -8 3305 3270 1717 176 3 26 chr1 137532597 137532904 -105131449 - AluJo SINE Alu -12 300 1 1879 103 0 0 chr1 137532912 137533154 -105131199 - AluSg SINE Alu -9 301 60 323 173 62 0 chr1 137534218 137534299 -105130054 + L1ME4a LINE L1 6033 6118 -3 2079 133 7 0 chr1 137534539 137534847 -105129506 + AluSx SINE Alu 2 311 -1 2121 123 16 7 chr1 137535456 137535765 -105128588 - AluSx SINE Alu 0 312 1 350 235 61 17 chr1 137536113 137536228 -105128125 + MER20B DNA MER1_type 38 157 -626 850 269 98 32 chr1 137536530 137536876 -105127477 - L1MC4a LINE L1 -1926 6677 6309 619 273 111 44 chr1 137537043 137537567 -105126786 - L1MC4a LINE L1 -806 6135 5577 1902 225 49 6 chr1 137537770 137538237 -105126116 - L1ME3A LINE L1 -5 6165 5679 356 320 24 40 chr1 137538240 137538487 -105125866 - L1MC4a LINE L1 -4001 3121 2879 303 298 44 61 chr1 137538665 137538799 -105125554 - HAL1b LINE L1 -503 845 710 2862 60 19 19 chr1 137538799 137539169 -105125184 + L1PA5 LINE L1 5785 6154 0 333 0 0 0 chr1 137539174 137539211 -105125142 + (TA)n Simple_repeat Simple_repeat 2 38 0 303 298 44 61 chr1 137539211 137539251 -105125102 - HAL1b LINE L1 -642 706 668 * 309 314 84 26 chr1 137539240 137539431 -105124922 - HAL1 LINE L1 -841 1666 1465 283 328 111 12 chr1 137539499 137539743 -105124610 - L1MC4a LINE L1 -4889 1534 1267 2684 33 0 0 chr1 137540012 137540314 -105124039 + AluY SINE Alu 1 302 -9 231 335 69 17 chr1 137540557 137540730 -105123623 - MLT1J LTR MaLR -83 428 247 2300 96 3 0 chr1 137540738 137541039 -105123314 + AluSp SINE Alu 1 302 -11 437 222 74 0 chr1 137541171 137541279 -105123074 + MIR3 SINE MIR 88 203 -5 615 176 136 28 chr1 137543450 137543626 -105120727 + L2 LINE L2 3113 3307 -6 802 267 71 37 chr1 137543635 137543957 -105120396 - MLT1I LTR MaLR -5 404 72 249 251 129 99 chr1 137544928 137545099 -105119254 - MIR SINE MIR -55 207 32 968 254 30 30 chr1 137546479 137546813 -105117540 + L1MC4a LINE L1 5693 6026 -1782 23 33 0 0 chr1 137546883 137546913 -105117440 + AT_rich Low_complexity Low_complexity 1 30 0 58 28 0 0 chr1 137547467 137547539 -105116814 + AT_rich Low_complexity Low_complexity 1 72 0 1993 133 3 14 chr1 137547651 137547945 -105116408 + AluJo SINE Alu 13 303 -9 235 288 114 54 chr1 137548289 137548473 -105115880 + L2 LINE L2 2223 2417 -897 1030 268 86 51 chr1 137548823 137548899 -105115454 + L2 LINE L2 2649 2721 -592 1191 206 27 5 chr1 137548899 137549118 -105115235 - MER58A DNA MER1_type 0 224 1 1030 268 86 51 chr1 137549118 137549507 -105114846 + L2 LINE L2 2721 3162 -151 344 22 0 22 chr1 137549507 137549553 -105114800 + (TA)n Simple_repeat Simple_repeat 1 45 0 1030 268 86 51 chr1 137549553 137549698 -105114655 + L2 LINE L2 3162 3301 -12 674 194 23 16 chr1 137549771 137549900 -105114453 + AluJb SINE Alu 121 250 -62 1149 180 0 26 chr1 137549900 137550128 -105114225 + AluJo SINE Alu 85 306 -6 210 238 0 0 chr1 137550137 137550179 -105114174 + L2 LINE L2 2716 2757 -557 303 306 93 9 chr1 137550258 137550366 -105113987 + L2 LINE L2 3151 3267 -5 759 194 82 133 chr1 137552554 137552967 -105111386 + L1MC4 LINE L1 6686 7077 -884 343 200 30 30 chr1 137552987 137553087 -105111266 + L1MC5 LINE L1 7807 7906 -55 360 43 0 0 chr1 137553096 137553142 -105111211 + (A)n Simple_repeat Simple_repeat 1 46 0 316 227 0 0 chr1 137553440 137553506 -105110847 - MSTD LTR MaLR -1 395 330 1721 63 0 60 chr1 137553508 137553818 -105110535 + AluY SINE Alu 75 369 0 872 156 36 42 chr1 137553818 137553985 -105110368 - MSTD LTR MaLR -55 341 176 209 194 0 0 chr1 137555046 137555082 -105109271 + GA-rich Low_complexity Low_complexity 4 39 0 2280 119 0 0 chr1 137555327 137555639 -105108714 + AluSx SINE Alu 1 312 0 393 335 62 11 chr1 137557001 137557180 -105107173 + MIR3 SINE MIR 20 207 -1 1183 247 150 25 chr1 137557382 137557587 -105106766 - L2 LINE L2 0 3313 3135 4016 65 0 4 chr1 137557587 137558095 -105106258 - L1PA7 LINE L1 0 6154 5649 1183 247 150 25 chr1 137558095 137558600 -105105753 - L2 LINE L2 -178 3135 2492 253 284 167 0 chr1 137558666 137558768 -105105585 + L2 LINE L2 3154 3272 0 227 140 60 0 chr1 137559679 137559729 -105104624 + MIR SINE MIR 84 136 -126 446 304 47 5 chr1 137561076 137561267 -105103086 - MIR SINE MIR -17 245 47 2325 77 28 0 chr1 137562782 137563069 -105101284 + AluSx SINE Alu 2 296 -16 272 376 51 0 chr1 137564613 137564770 -105099583 + L2 LINE L2 3108 3272 0 366 23 0 0 chr1 137565388 137565431 -105098922 + (CA)n Simple_repeat Simple_repeat 2 44 0 25 0 0 0 chr1 137565444 137565469 -105098884 + AT_rich Low_complexity Low_complexity 1 25 0 1918 145 0 31 chr1 137566115 137566432 -105097921 - AluJo SINE Alu 0 312 6 448 219 96 27 chr1 137566521 137566667 -105097686 + MIR SINE MIR 20 175 -87 2458 82 0 7 chr1 137567053 137567359 -105096994 - AluSg SINE Alu -6 304 1 2156 136 0 3 chr1 137567584 137567886 -105096467 + AluSx SINE Alu 1 301 -11 302 286 14 43 chr1 137568853 137568993 -105095360 + MIR SINE MIR 127 262 0 311 260 48 39 chr1 137569298 137569402 -105094951 - L2 LINE L2 -25 3288 3184 27 29 0 0 chr1 137569646 137569680 -105094673 + AT_rich Low_complexity Low_complexity 1 34 0 1510 81 5 63 chr1 137570024 137570246 -105094107 - AluSg/x SINE Alu -19 293 85 721 153 0 23 chr1 137570287 137570418 -105093935 + FLAM_A SINE Alu 10 137 -5 467 311 24 6 chr1 137571677 137571844 -105092509 + L3b LINE CR1 1319 1488 -95 200 273 15 30 chr1 137573893 137573959 -105090394 - L3b LINE CR1 -97 1486 1422 797 224 12 27 chr1 137574161 137574366 -105089987 + L1ME1 LINE L1 5976 6334 0 348 255 21 12 chr1 137574367 137574477 -105089876 + MIR SINE MIR 45 153 -63 2144 119 11 0 chr1 137574489 137574774 -105089579 + AluSx SINE Alu 1 288 -24 1908 177 0 0 chr1 137575442 137575742 -105088611 + AluSx SINE Alu 1 300 -12 2588 68 0 3 chr1 137576357 137576668 -105087685 + AluSg SINE Alu 1 310 0 420 243 19 0 chr1 137576671 137576774 -105087579 + L2 LINE L2 3201 3305 -8 183 100 0 0 chr1 137576776 137576806 -105087547 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 456 19 0 0 chr1 137577330 137577383 -105086970 + (TG)n Simple_repeat Simple_repeat 2 54 0 361 283 42 0 chr1 137579167 137579287 -105085066 - MIR SINE MIR -126 136 12 420 290 145 0 chr1 137580014 137580145 -105084208 - L2 LINE L2 0 3272 3123 383 272 39 36 chr1 137580684 137580872 -105083481 - MIR SINE MIR -59 203 16 217 333 49 40 chr1 137581732 137581957 -105082396 + L2 LINE L2 2288 2514 -800 253 290 65 28 chr1 137582449 137582556 -105081797 - L2 LINE L2 -6 3266 3156 463 283 97 62 chr1 137583423 137583731 -105080622 + L1MD1 LINE L1 4833 5164 -982 1961 169 0 7 chr1 137583731 137584038 -105080315 - AluJb SINE Alu -5 307 3 463 283 97 62 chr1 137584038 137584195 -105080158 + L1MD1 LINE L1 5164 5314 -832 1430 105 0 0 chr1 137584234 137584415 -105079938 + AluSx SINE Alu 1 181 -131 226 258 11 34 chr1 137584419 137584508 -105079845 - MIR SINE MIR -60 202 116 745 192 0 8 chr1 137584624 137584754 -105079599 - FLAM_A SINE Alu -4 129 1 2755 169 48 40 chr1 137584779 137585348 -105079005 + L1MD1 LINE L1 5670 6242 0 2262 116 124 21 chr1 137585593 137585981 -105078372 + MSTC LTR MaLR 1 428 0 199 266 62 106 chr1 137585983 137586067 -105078286 + L2 LINE L2 3187 3266 -47 2336 102 0 0 chr1 137586067 137586361 -105077992 + AluSg SINE Alu 1 294 -16 199 266 62 106 chr1 137586361 137586389 -105077964 + L2 LINE L2 3266 3294 -19 199 354 25 0 chr1 137587938 137588017 -105076336 - MIR3 SINE MIR -51 157 77 2266 102 0 13 chr1 137588978 137589283 -105075070 - AluSx SINE Alu -11 301 1 287 263 30 30 chr1 137589306 137589405 -105074948 - MIR3 SINE MIR -7 201 103 804 250 59 0 chr1 137589554 137589758 -105074595 + MIR SINE MIR 46 261 -1 305 290 69 44 chr1 137589784 137589942 -105074411 - MIR3 SINE MIR -66 142 3 205 191 0 0 chr1 137590477 137590519 -105073834 + A-rich Low_complexity Low_complexity 1 42 0 414 310 149 7 chr1 137591802 137592008 -105072345 - MIR SINE MIR -34 228 1 2163 120 3 46 chr1 137592023 137592347 -105072006 - AluSx SINE Alu -2 310 1 321 269 50 35 chr1 137592444 137592585 -105071768 - MIR SINE MIR -47 215 73 230 346 0 30 chr1 137593221 137593322 -105071031 - MER5A DNA MER1_type -3 186 89 2162 58 0 8 chr1 137593968 137594228 -105070125 - AluY SINE Alu -11 300 43 483 257 54 73 chr1 137594455 137594716 -105069637 - MER112 DNA MER1_type 0 256 1 210 342 25 13 chr1 137594751 137594830 -105069523 + L2 LINE L2 3158 3237 -35 1429 159 69 67 chr1 137594923 137595269 -105069084 - L1ME2 LINE L1 -10 6154 5808 193 221 260 19 chr1 137596200 137596304 -105068049 - L2 LINE L2 -1 3271 3143 2260 112 0 7 chr1 137597598 137597902 -105066451 + AluSx SINE Alu 2 303 -9 2146 132 0 0 chr1 137597913 137598216 -105066137 + AluSx SINE Alu 1 303 -9 244 271 16 47 chr1 137599138 137599267 -105065086 - L2 LINE L2 -712 2602 2478 1145 181 53 56 chr1 137599991 137600295 -105064058 - L1ME2 LINE L1 -56 6108 5806 185 316 0 0 chr1 137601625 137601682 -105062671 - L2 LINE L2 -2 3270 3214 219 250 0 0 chr1 137602072 137602116 -105062237 - MIR SINE MIR -140 122 79 485 248 51 19 chr1 137602242 137602399 -105061954 + MIR SINE MIR 77 238 -24 256 220 0 34 chr1 137603307 137603366 -105060987 - MIR3 SINE MIR -2 206 150 243 296 28 0 chr1 137603577 137603648 -105060705 - MIR3 SINE MIR -50 158 86 200 211 260 19 chr1 137604783 137604887 -105059466 - L2 LINE L2 -1 3271 3143 398 323 96 35 chr1 137605532 137605845 -105058508 - MLT1K LTR MaLR -78 510 179 26 50 0 0 chr1 137609060 137609100 -105055253 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chr1 137611193 137611233 -105053120 + AT_rich Low_complexity Low_complexity 1 40 0 443 280 21 0 chr1 137611407 137611550 -105052803 + AluJb SINE Alu 16 161 -151 237 65 0 0 chr1 137612268 137612299 -105052054 + (T)n Simple_repeat Simple_repeat 1 31 0 352 257 48 70 chr1 137612791 137612978 -105051375 - L1ME4a LINE L1 -52 6069 5887 201 289 0 0 chr1 137613080 137613132 -105051221 + MIR SINE MIR 201 252 -10 237 286 14 0 chr1 137613177 137613247 -105051106 - L2 LINE L2 0 3272 3202 228 375 17 0 chr1 137613441 137613561 -105050792 - L2 LINE L2 -242 3030 2909 1997 155 3 7 chr1 137614616 137614926 -105049427 + AluSx SINE Alu 1 309 -3 2396 57 0 11 chr1 137614933 137615216 -105049137 + AluSp SINE Alu 2 281 -32 195 100 0 0 chr1 137615216 137615246 -105049107 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 341 243 12 8 chr1 137615794 137615914 -105048439 - L1MC4a LINE L1 -302 5819 5744 2229 100 0 10 chr1 137615976 137616275 -105048078 - AluSg SINE Alu -14 296 1 215 235 0 0 chr1 137616636 137616670 -105047683 + T-rich Low_complexity Low_complexity 1 34 0 369 301 66 0 chr1 137616796 137616932 -105047421 - MIR SINE MIR -98 164 20 1823 114 4 0 chr1 137617164 137617419 -105046934 - AluSp SINE Alu -2 311 56 503 323 65 30 chr1 137617502 137617734 -105046619 + MIR SINE MIR 21 260 -2 2286 120 3 0 chr1 137618036 137618345 -105046008 - AluSx SINE Alu -2 310 1 1474 166 3 76 chr1 137618640 137618782 -105045571 - AluJo SINE Alu -43 269 157 2171 108 21 0 chr1 137618782 137619068 -105045285 - AluSq SINE Alu -21 292 1 1474 166 3 76 chr1 137619068 137619215 -105045138 - AluJo SINE Alu -155 157 1 669 207 33 0 chr1 137619243 137619393 -105044960 + L1MA10 LINE L1 6177 6331 -3 1508 157 0 0 chr1 137619586 137619815 -105044538 + AluJb SINE Alu 84 312 0 2768 152 31 2 chr1 137619826 137620308 -105044045 + L1MB3 LINE L1 5688 6183 0 22 0 0 0 chr1 137621555 137621577 -105042776 + AT_rich Low_complexity Low_complexity 1 22 0 1393 157 73 82 chr1 137621965 137622308 -105042045 - MER2 DNA MER2_type -3 341 2 220 224 0 0 chr1 137622735 137622784 -105041569 - MIR SINE MIR -71 137 89 643 285 51 4 chr1 137622946 137623181 -105041172 - MIR SINE MIR -15 247 2 197 318 12 12 chr1 137623283 137623368 -105040985 - MIR SINE MIR -158 104 20 396 193 138 9 chr1 137623386 137623495 -105040858 + L2 LINE L2 3191 3313 0 539 298 26 5 chr1 137623504 137623695 -105040658 + MIR SINE MIR 67 261 -1 491 248 58 0 chr1 137623805 137623926 -105040427 + MIR3 SINE MIR 30 157 -51 243 0 0 0 chr1 137624349 137624376 -105039977 + (A)n Simple_repeat Simple_repeat 1 27 0 22 56 0 0 chr1 137630918 137630954 -105033399 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr1 137631209 137631257 -105033096 + AT_rich Low_complexity Low_complexity 1 48 0 1067 135 37 40 chr1 137631691 137631898 -105032455 + L1MB2 LINE L1 5566 5777 -387 348 246 0 0 chr1 137631898 137631967 -105032386 + FRAM/FAM SINE Alu 8 76 -90 419 170 53 0 chr1 137631972 137632066 -105032287 + L1MB2 LINE L1 6069 6167 -4 198 270 11 79 chr1 137632485 137632574 -105031779 + MIR SINE MIR 52 134 -128 1886 153 14 0 chr1 137632595 137632883 -105031470 - AluJo SINE Alu -16 296 5 2119 96 0 28 chr1 137632891 137633205 -105031148 - AluSp SINE Alu 0 306 1 261 264 66 28 chr1 137633494 137633600 -105030753 - L2 LINE L2 0 3313 3204 2232 122 3 3 chr1 137633607 137633919 -105030434 - AluSx SINE Alu 0 312 1 1123 88 7 0 chr1 137633923 137634060 -105030293 - AluSq/x SINE Alu -172 140 3 2335 104 0 0 chr1 137634069 137634366 -105029987 - AluSx SINE Alu -12 300 4 1250 185 24 4 chr1 137634381 137634630 -105029723 - MER33 DNA MER1_type -70 254 1 547 244 35 0 chr1 137634716 137634831 -105029522 + L2 LINE L2 3145 3263 -9 180 77 0 0 chr1 137634834 137634860 -105029493 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1911 107 76 0 chr1 137635617 137635920 -105028433 + AluSq SINE Alu 1 323 0 15495 113 36 20 chr1 137636793 137636997 -105027356 - Tigger1 DNA MER2_type 0 2418 2219 1779 166 3 17 chr1 137636997 137637299 -105027054 + AluJb SINE Alu 1 298 -14 15495 113 36 20 chr1 137637299 137638524 -105025829 - Tigger1 DNA MER2_type -199 2219 1014 1677 151 85 0 chr1 137638524 137638795 -105025558 + AluSq SINE Alu 2 295 -18 2600 67 3 0 chr1 137638804 137639116 -105025237 + AluSp SINE Alu 1 313 0 15495 113 36 20 chr1 137639116 137640055 -105024298 - Tigger1 DNA MER2_type -1411 1007 2 739 118 9 4 chr1 137640075 137640287 -105024066 + AluSx SINE Alu 2 301 -11 2015 108 29 39 chr1 137640377 137640684 -105023669 - AluSq SINE Alu -9 304 1 2341 93 10 0 chr1 137640693 137640994 -105023359 - AluSx SINE Alu -8 304 1 1835 150 3 3 chr1 137641127 137641420 -105022933 - AluJb SINE Alu -14 298 6 315 267 47 17 chr1 137642830 137643002 -105021351 + L1ME3A LINE L1 5785 5961 -209 2200 117 0 3 chr1 137643204 137643504 -105020849 + AluSx SINE Alu 1 299 -13 1605 167 20 43 chr1 137644155 137644460 -105019893 + AluJb SINE Alu 2 299 -13 25 0 0 0 chr1 137645256 137645281 -105019072 + AT_rich Low_complexity Low_complexity 1 25 0 261 83 0 0 chr1 137645548 137645584 -105018769 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 757 226 95 27 chr1 137645841 137646062 -105018291 - MIR SINE MIR -8 254 19 216 0 0 0 chr1 137646384 137646408 -105017945 + (TG)n Simple_repeat Simple_repeat 2 25 0 1144 138 17 0 chr1 137646800 137646974 -105017379 - FRAM SINE Alu -2 174 1 1873 134 8 4 chr1 137646994 137647297 -105017056 - AluSx SINE Alu 0 319 16 2172 113 7 0 chr1 137647322 137647614 -105016739 - AluSp SINE Alu -19 294 1 1816 161 0 13 chr1 137648204 137648508 -105015845 + AluJo SINE Alu 1 300 -12 278 177 152 13 chr1 137649627 137649706 -105014647 - MIR SINE MIR -49 213 124 1796 166 7 0 chr1 137649710 137649994 -105014359 + AluJb SINE Alu 3 288 -24 192 158 0 0 chr1 137650001 137650039 -105014314 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 412 218 109 18 chr1 137650231 137650341 -105014012 - L2 LINE L2 -9 3304 3185 632 188 188 0 chr1 137650362 137650516 -105013837 - MIR SINE MIR -12 250 68 2410 99 0 6 chr1 137650572 137650884 -105013469 - AluSx SINE Alu 0 312 3 231 98 16 66 chr1 137650919 137650980 -105013373 + (TAAAAA)n Simple_repeat Simple_repeat 4 61 0 293 231 103 0 chr1 137652399 137652477 -105011876 - L2 LINE L2 -1 3312 3227 1733 171 3 7 chr1 137652539 137652848 -105011505 + AluJo SINE Alu 1 308 -4 268 98 20 59 chr1 137653248 137653299 -105011054 - MLT1H LTR MaLR -2 593 545 * 893 243 125 65 chr1 137653291 137653707 -105010646 - MLT1H LTR MaLR -108 441 1 306 207 41 4 chr1 137653708 137653782 -105010571 + LTR67 LTR ERVL 452 557 0 25 0 0 0 chr1 137653998 137654023 -105010330 + AT_rich Low_complexity Low_complexity 1 25 0 852 209 166 54 chr1 137654076 137654426 -105009927 - L2 LINE L2 -768 2546 2158 492 304 47 18 chr1 137654477 137654648 -105009705 - MER5A DNA MER1_type -13 176 1 263 261 337 0 chr1 137656033 137656125 -105008228 + MIR3 SINE MIR 70 192 -16 2218 149 22 68 chr1 137656179 137656588 -105007765 - MLT1B LTR MaLR 0 390 1 813 229 17 6 chr1 137658730 137658905 -105005448 + MIR SINE MIR 2 178 -84 24 0 0 0 chr1 137658990 137659014 -105005339 + AT_rich Low_complexity Low_complexity 1 24 0 677 236 118 31 chr1 137659211 137659455 -105004898 - L1ME LINE L1 -316 5805 5584 1990 97 8 0 chr1 137659455 137659713 -105004640 + AluSq SINE Alu 43 302 -11 677 236 118 31 chr1 137659713 137659856 -105004497 - L1ME LINE L1 -537 5584 5346 278 230 118 14 chr1 137660738 137660830 -105003523 - MIR3 SINE MIR -36 172 70 1586 184 8 68 chr1 137661042 137661243 -105003110 - MLT1A2 LTR MaLR -25 349 178 1589 142 82 21 chr1 137661243 137661524 -105002829 - AluJo SINE Alu -14 298 1 1586 184 8 68 chr1 137661524 137661692 -105002661 - MLT1A2 LTR MaLR -196 178 2 328 261 123 14 chr1 137661706 137661844 -105002509 + L2 LINE L2 3161 3313 0 * 754 257 69 5 chr1 137661842 137662044 -105002309 - MIR SINE MIR -13 249 35 2240 118 3 3 chr1 137662054 137662367 -105001986 - AluSq SINE Alu 0 313 1 256 211 56 28 chr1 137663016 137663087 -105001266 - MIR SINE MIR -177 85 13 1526 143 9 9 chr1 137663375 137663606 -105000747 - AluJo SINE Alu -52 260 30 2109 158 16 11 chr1 137663622 137663990 -105000363 - L1MB8 LINE L1 0 6178 5809 960 303 74 24 chr1 137664914 137665552 -104998801 - L1MC4a LINE L1 -1874 5934 5265 2581 50 7 0 chr1 137665558 137665856 -104998497 - AluY SINE Alu -11 300 1 228 233 0 0 chr1 137666066 137666109 -104998244 + (TG)n Simple_repeat Simple_repeat 2 44 0 238 269 0 0 chr1 137666151 137666203 -104998150 + GA-rich Low_complexity Low_complexity 1 52 0 305 220 0 0 chr1 137666632 137666691 -104997662 - MIR SINE MIR -132 130 72 365 290 75 48 chr1 137667147 137667333 -104997020 - L2 LINE L2 0 3272 3082 2261 105 3 0 chr1 137667399 137667694 -104996659 - AluSp SINE Alu -17 296 1 3176 200 40 31 chr1 137667706 137668177 -104996176 - L1MA9 LINE L1 -36 6276 5794 8818 113 14 32 chr1 137668177 137669437 -104994916 - HSMAR2 DNA Mariner -1 1301 64 2510 55 0 13 chr1 137669437 137669749 -104994604 - AluY SINE Alu -3 308 1 8818 113 14 32 chr1 137669749 137669812 -104994541 - HSMAR2 DNA Mariner -1238 64 1 3176 200 40 31 chr1 137669812 137670080 -104994273 - L1MA9 LINE L1 -518 5794 5530 343 250 0 0 chr1 137670084 137670156 -104994197 + L1 LINE L1 5018 5089 -1057 2212 97 0 10 chr1 137670157 137670446 -104993907 - AluSx SINE Alu -24 288 3 212 283 101 61 chr1 137670558 137670805 -104993548 - L2 LINE L2 -1045 2269 2013 371 250 115 58 chr1 137670916 137671072 -104993281 - MIR SINE MIR -78 184 20 221 340 160 0 chr1 137671273 137671373 -104992980 + L2 LINE L2 3143 3258 -14 1998 184 85 87 chr1 137671666 137672103 -104992250 + MLT1D LTR MaLR 1 438 -67 2403 87 0 0 chr1 137672103 137672401 -104991952 - AluSq SINE Alu -14 299 2 1998 184 85 87 chr1 137672401 137672469 -104991884 + MLT1D LTR MaLR 438 505 0 2703 138 62 62 chr1 137672924 137673317 -104991036 + Tigger4(Zombi) DNA MER2_type 1 393 -2338 2807 13 0 0 chr1 137673317 137673621 -104990732 + AluYa5 SINE Alu 1 304 -7 2703 138 62 62 chr1 137673621 137673680 -104990673 + Tigger4(Zombi) DNA MER2_type 393 451 -2280 2310 94 20 0 chr1 137673680 137673979 -104990374 + AluSx SINE Alu 1 305 -7 2703 138 62 62 chr1 137673979 137674056 -104990297 + Tigger4(Zombi) DNA MER2_type 450 531 -2200 1070 99 66 0 chr1 137674052 137674204 -104990149 + Tigger4(Zombi) DNA MER2_type 2568 2729 -2 * 1713 186 104 48 chr1 137674204 137674646 -104989707 - MLT1C LTR MaLR 0 467 1 335 299 62 21 chr1 137675033 137675177 -104989176 + MIR SINE MIR 111 260 -2 250 343 49 28 chr1 137675411 137675554 -104988799 - MIR SINE MIR -70 192 47 242 153 51 161 chr1 137675657 137675700 -104988653 + MER112 DNA MER1_type 14 60 -200 2561 53 0 3 chr1 137675700 137676001 -104988352 + AluY SINE Alu 1 300 -11 242 153 51 161 chr1 137676001 137676075 -104988278 + MER112 DNA MER1_type 60 118 -142 1742 183 104 48 chr1 137676364 137676806 -104987547 + MLT1C LTR MaLR 1 467 0 1070 99 66 0 chr1 137676806 137676958 -104987395 - Tigger4(Zombi) DNA MER2_type -2 2729 2568 * 2847 137 64 37 chr1 137676954 137677031 -104987322 - Tigger4(Zombi) DNA MER2_type -2200 531 458 2285 96 20 0 chr1 137677031 137677324 -104987029 - AluSx SINE Alu -13 299 1 2847 137 64 37 chr1 137677324 137677763 -104986590 - Tigger4(Zombi) DNA MER2_type -2273 458 1 1953 188 85 87 chr1 137678218 137678286 -104986067 - MLT1D LTR MaLR 0 505 438 2319 98 0 0 chr1 137678286 137678581 -104985772 + AluSq SINE Alu 2 296 -17 1953 188 85 87 chr1 137678581 137679018 -104985335 - MLT1D LTR MaLR -67 438 1 221 340 160 0 chr1 137679311 137679411 -104984942 - L2 LINE L2 -14 3258 3143 385 244 115 58 chr1 137679612 137679768 -104984585 + MIR SINE MIR 20 184 -78 276 309 88 76 chr1 137679879 137680238 -104984115 + L2 LINE L2 2013 2379 -935 2218 106 7 3 chr1 137680238 137680541 -104983812 + AluSx SINE Alu 3 306 -6 276 309 88 76 chr1 137680541 137680614 -104983739 + L2 LINE L2 2379 2450 -864 2325 79 0 55 chr1 137680658 137680987 -104983366 - AluY SINE Alu 0 311 1 2204 112 0 32 chr1 137680987 137681301 -104983052 - AluSg SINE Alu -6 304 1 1246 273 75 55 chr1 137681303 137681853 -104982500 + Charlie2b DNA MER1_type 123 683 -2099 219 88 0 0 chr1 137682007 137682041 -104982312 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 725 164 17 26 chr1 137682042 137682158 -104982195 - FLAM_C SINE Alu -27 116 2 2218 212 57 11 chr1 137682159 137682687 -104981666 + Charlie2b DNA MER1_type 837 1388 -1394 473 296 166 55 chr1 137682732 137683165 -104981188 - LTR67 LTR ERVL -70 487 7 1973 154 0 26 chr1 137684414 137684726 -104979627 + AluSx SINE Alu 1 304 -8 1853 144 4 0 chr1 137684914 137685192 -104979161 + AluJo SINE Alu 22 300 -12 1727 186 0 23 chr1 137686229 137686535 -104977818 + AluJo SINE Alu 1 299 -13 740 332 30 70 chr1 137686544 137686872 -104977481 + L2 LINE L2 2957 3271 -1 1729 156 22 0 chr1 137687186 137687456 -104976897 - Tigger3b DNA MER2_type 0 1231 956 3539 151 84 123 chr1 137687456 137688404 -104975949 + MER21A LTR ERV1 1 911 -20 6243 106 31 8 chr1 137688420 137689357 -104974996 - Tigger3b DNA MER2_type -271 960 2 294 164 65 12 chr1 137689854 137689943 -104974410 - L1M LINE L1 -811 5358 5258 1403 181 9 48 chr1 137690360 137690618 -104973735 - L1 LINE L1 -810 5336 5092 2290 93 0 7 chr1 137690618 137690908 -104973445 + AluSx SINE Alu 1 288 -24 1403 181 9 48 chr1 137690908 137690981 -104973372 - L1 LINE L1 -1054 5092 5018 3192 199 40 31 chr1 137690985 137691253 -104973100 + L1MA9 LINE L1 5530 5794 -518 9097 109 14 26 chr1 137691253 137691316 -104973037 + HSMAR2 DNA Mariner 1 63 -1239 2498 60 0 10 chr1 137691316 137691630 -104972723 + AluY SINE Alu 1 311 0 9097 109 14 26 chr1 137691630 137692883 -104971470 + HSMAR2 DNA Mariner 63 1301 -1 3192 199 40 31 chr1 137692883 137693354 -104970999 + L1MA9 LINE L1 5794 6276 -36 1440 96 0 0 chr1 137693366 137693543 -104970810 + AluSx SINE Alu 1 177 -135 1130 86 0 0 chr1 137694157 137694296 -104970057 - AluSx SINE Alu -152 160 22 497 167 0 0 chr1 137694490 137694562 -104969791 - tRNA-Gly-GGG tRNA tRNA 0 74 3 2090 161 22 68 chr1 137698937 137699346 -104965007 + MLT1B LTR MaLR 1 390 0 263 261 337 0 chr1 137699400 137699492 -104964861 - MIR3 SINE MIR -16 192 70 503 304 47 18 chr1 137700877 137701048 -104963305 + MER5A DNA MER1_type 1 176 -13 865 209 166 54 chr1 137701099 137701449 -104962904 + L2 LINE L2 2158 2546 -768 25 0 0 0 chr1 137701502 137701527 -104962826 + AT_rich Low_complexity Low_complexity 1 25 0 277 207 41 4 chr1 137701743 137701817 -104962536 - LTR67 LTR ERVL 0 557 452 751 245 125 65 chr1 137701818 137702234 -104962119 + MLT1H LTR MaLR 1 441 -108 242 98 20 59 chr1 137702226 137702277 -104962076 + MLT1H LTR MaLR 545 593 -2 * 1749 171 3 7 chr1 137702677 137702986 -104961367 - AluJo SINE Alu -4 308 1 299 231 103 0 chr1 137703048 137703126 -104961227 + L2 LINE L2 3227 3312 -1 231 98 16 66 chr1 137704545 137704606 -104959747 + (TTTTTA)n Simple_repeat Simple_repeat 4 61 0 2211 132 0 0 chr1 137704641 137704936 -104959417 + AluSx SINE Alu 3 297 -15 3955 82 40 9 chr1 137705961 137706538 -104957815 - LTR61 LTR ERV1 0 595 1 1754 146 33 0 chr1 137706559 137706886 -104957467 - AluJb SINE Alu 0 336 1 424 200 89 104 chr1 137706909 137707179 -104957174 + L1M4 LINE L1 4375 4640 -1506 1439 284 114 14 chr1 137707192 137707777 -104956576 + L2 LINE L2 2025 2668 -646 185 344 0 0 chr1 137709263 137709324 -104955029 - L2 LINE L2 -7 3265 3205 2766 26 3 0 chr1 137710643 137710953 -104953400 + AluY SINE Alu 1 311 0 1137 173 5 11 chr1 137711208 137711399 -104952954 - AluJo SINE Alu -17 295 106 343 357 26 41 chr1 137711429 137711894 -104952459 - L1MC/D LINE L1 -2028 5780 5323 345 316 10 67 chr1 137712020 137712213 -104952140 + L2 LINE L2 2925 3106 -166 2216 97 0 0 chr1 137712218 137712554 -104951799 - AluSq SINE Alu 0 336 1 2322 101 0 3 chr1 137712763 137713071 -104951282 + AluSx SINE Alu 1 307 -5 273 311 16 16 chr1 137713858 137713980 -104950373 - Charlie4 DNA MER1_type -2 1959 1838 1483 164 27 23 chr1 137714730 137714993 -104949360 + AluJb SINE Alu 5 268 -44 828 126 0 0 chr1 137714994 137715121 -104949232 + MLT1A1 LTR MaLR 222 348 -17 1254 60 132 0 chr1 137715236 137715403 -104948950 - AluY SINE Alu -119 192 4 307 302 8 32 chr1 137715405 137715531 -104948822 - LTR33 LTR ERVL -53 468 346 1187 226 3 77 chr1 137715700 137716063 -104948290 + MLT1A2 LTR MaLR 39 374 0 180 286 0 0 chr1 137716436 137716478 -104947875 - MIR3 SINE MIR -52 156 115 585 26 0 13 chr1 137717253 137717329 -104947024 + U1 snRNA snRNA 91 165 0 550 124 76 196 chr1 137717758 137717983 -104946370 - AluJb SINE Alu -113 199 2 342 194 110 58 chr1 137718171 137718326 -104946027 + REP3 LTR ERV 1 163 -399 227 169 0 17 chr1 137718321 137718380 -104945973 - MER58 DNA MER1_type -101 2319 2262 * 239 286 77 48 chr1 137718850 137718884 -104945469 + L2 LINE L2 2351 2383 -931 2085 139 0 0 chr1 137718884 137719187 -104945166 - AluSx SINE Alu -9 303 1 239 286 77 48 chr1 137719187 137719320 -104945033 + L2 LINE L2 2383 2523 -791 1623 163 111 47 chr1 137719362 137719582 -104944771 + LOR1b LTR ERV1 1 205 -256 2520 51 0 10 chr1 137719582 137719896 -104944457 - AluY SINE Alu 0 311 1 1623 163 111 47 chr1 137719896 137720079 -104944274 + LOR1b LTR ERV1 205 430 -31 1967 105 11 0 chr1 137720581 137720883 -104943470 + AluSg SINE Alu 1 305 0 203 125 25 0 chr1 137721408 137721448 -104942905 + (TA)n Simple_repeat Simple_repeat 2 42 0 315 0 0 0 chr1 137721452 137721487 -104942866 + (CA)n Simple_repeat Simple_repeat 2 36 0 641 140 9 0 chr1 137721487 137721594 -104942759 - FLAM_C SINE Alu -33 110 3 23 33 0 0 chr1 137721597 137721627 -104942726 + AT_rich Low_complexity Low_complexity 1 30 0 224 344 129 21 chr1 137721875 137722061 -104942292 - MIR SINE MIR -38 224 19 7722 49 1 1 chr1 137722617 137724359 -104939994 + L1PA5 LINE L1 4409 6150 -4 729 176 127 7 chr1 137724442 137724584 -104939769 - FAM SINE Alu -16 159 1 13479 127 32 84 chr1 137724909 137727774 -104936579 - Tigger2 DNA MER2_type -2 2716 2 1486 186 44 3 chr1 137727776 137728094 -104936259 + MER46B DNA MER2_type 23 228 -8 22 56 0 0 chr1 137728654 137728690 -104935663 + AT_rich Low_complexity Low_complexity 1 36 0 2244 101 3 0 chr1 137728786 137729074 -104935279 - AluSc SINE Alu -20 289 1 420 314 91 46 chr1 137729179 137729418 -104934935 + L1MC4a LINE L1 5348 5575 -2233 2723 127 19 22 chr1 137729418 137729881 -104934472 + L1PA16 LINE L1 5704 6165 -1 420 314 91 46 chr1 137729881 137730202 -104934151 + L1MC4a LINE L1 5575 5933 -1875 24 0 0 0 chr1 137731537 137731561 -104932792 + AT_rich Low_complexity Low_complexity 1 24 0 2198 181 3 3 chr1 137732268 137732633 -104931720 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr1 137732969 137732992 -104931361 + AT_rich Low_complexity Low_complexity 1 23 0 1329 160 0 14 chr1 137733639 137733851 -104930502 - AluJo SINE Alu -18 294 86 2303 125 0 0 chr1 137734458 137734770 -104929583 - AluSx SINE Alu 0 312 1 618 294 19 85 chr1 137734950 137735422 -104928931 - LTR67 LTR ERVL -25 532 92 294 194 45 0 chr1 137735949 137736016 -104928337 - ERVL LTR ERVL -469 5295 5226 752 180 21 18 chr1 137736079 137736363 -104927990 - L1MC2 LINE L1 -2 6342 5961 1478 134 20 0 chr1 137737126 137737380 -104926973 - L1MC2 LINE L1 -365 5979 5721 453 36 0 0 chr1 137737391 137737446 -104926907 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 567 226 131 12 chr1 137739533 137739701 -104924652 + MER5A DNA MER1_type 2 189 0 2312 94 0 0 chr1 137741477 137741774 -104922579 - AluSq SINE Alu -16 297 1 2064 143 7 0 chr1 137743995 137744296 -104920057 - AluSx SINE Alu -9 303 1 22 70 0 0 chr1 137744716 137744759 -104919594 + AT_rich Low_complexity Low_complexity 1 43 0 2035 145 3 0 chr1 137745047 137745344 -104919009 - AluSx SINE Alu -14 298 1 23 0 0 0 chr1 137745354 137745377 -104918976 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr1 137747970 137748013 -104916340 + AT_rich Low_complexity Low_complexity 1 43 0 519 187 0 37 chr1 137748364 137748471 -104915882 - AluJo SINE Alu -176 136 34 337 355 16 9 chr1 137748934 137749071 -104915282 + MIR SINE MIR 4 139 -69 1766 184 32 9 chr1 137749502 137749850 -104914503 + MLT1A1 LTR MaLR 10 365 0 752 302 93 35 chr1 137750653 137750825 -104913528 - L1ME4a LINE L1 0 6121 5960 503 135 22 0 chr1 137750825 137750914 -104913439 + L1MA6 LINE L1 6210 6300 0 752 302 93 35 chr1 137750914 137751278 -104913075 - L1ME4a LINE L1 -161 5960 5554 23 0 0 0 chr1 137751690 137751713 -104912640 + AT_rich Low_complexity Low_complexity 1 23 0 840 140 0 0 chr1 137751797 137751911 -104912442 + AluJo SINE Alu 17 130 -182 398 208 118 62 chr1 137753025 137753169 -104911184 - MER5B DNA MER1_type -5 173 22 2276 121 22 19 chr1 137753297 137753660 -104910693 + THE1B LTR MaLR 1 364 0 509 219 151 8 chr1 137753741 137753860 -104910493 - MER5B DNA MER1_type -41 137 2 1004 182 11 0 chr1 137753896 137754072 -104910281 + AluJo SINE Alu 134 311 -1 191 35 0 35 chr1 137754072 137754101 -104910252 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 975 133 6 11 chr1 137754106 137754287 -104910066 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 302 309 21 0 chr1 137754866 137754963 -104909390 - MER81 DNA DNA -15 99 1 45 62 0 0 chr1 137755660 137755740 -104908613 + AT_rich Low_complexity Low_complexity 1 80 0 667 242 92 59 chr1 137755974 137756247 -104908106 + LTR33A LTR ERVL 218 499 -24 770 307 28 15 chr1 137756260 137756722 -104907631 - L1M4 LINE L1 -2158 3988 3521 930 302 82 51 chr1 137756913 137757967 -104906386 - L1MEd LINE L1 -5031 1088 2 440 284 151 15 chr1 137758136 137758407 -104905946 - L1ME LINE L1 -405 5716 5409 23 0 0 0 chr1 137758486 137758509 -104905844 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 137758833 137758854 -104905499 + AT_rich Low_complexity Low_complexity 1 21 0 2146 82 10 43 chr1 137759394 137759697 -104904656 - AluSq SINE Alu -20 293 1 232 296 28 0 chr1 137759782 137759853 -104904500 + MER5B DNA MER1_type 96 168 -10 1272 124 5 5 chr1 137760321 137760506 -104903847 + AluSp SINE Alu 118 302 -11 560 167 0 0 chr1 137760980 137761082 -104903271 + AluJb SINE Alu 208 309 -3 2211 107 3 0 chr1 137761331 137761620 -104902733 + AluSp SINE Alu 1 290 -23 608 46 89 9 chr1 137761637 137761852 -104902501 + (TA)n Simple_repeat Simple_repeat 1 232 0 2136 116 3 6 chr1 137762521 137762832 -104901521 - AluSg SINE Alu 0 310 1 2167 155 0 0 chr1 137763571 137763881 -104900472 + AluSx SINE Alu 1 310 -2 2149 93 0 26 chr1 137764004 137764315 -104900038 - AluY SINE Alu -6 305 3 704 187 22 0 chr1 137764403 137764542 -104899811 - AluSg/x SINE Alu -30 282 141 1456 77 24 0 chr1 137764543 137764752 -104899601 + MER41B LTR ERV1 422 635 0 2069 115 0 35 chr1 137765821 137766134 -104898219 + AluSx SINE Alu 1 302 -10 388 270 168 7 chr1 137766208 137766345 -104898008 + MIR SINE MIR 63 221 -41 409 268 47 53 chr1 137770038 137770228 -104894125 + MER20 DNA MER1_type 29 217 -2 220 293 73 53 chr1 137770399 137770549 -104893804 - MER5A DNA MER1_type -3 186 34 185 344 0 0 chr1 137771759 137771820 -104892533 + L2 LINE L2 3205 3265 -7 215 269 30 15 chr1 137773004 137773071 -104891282 - L2 LINE L2 -9 3263 3196 26 0 0 0 chr1 137773345 137773371 -104890982 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr1 137773519 137773543 -104890810 + (TC)n Simple_repeat Simple_repeat 1 24 0 2131 124 7 0 chr1 137773543 137773842 -104890511 - AluSx SINE Alu -11 301 1 1777 148 4 22 chr1 137773861 137774138 -104890215 - AluJb SINE Alu -18 294 23 1080 278 128 27 chr1 137774172 137774757 -104889596 + L2 LINE L2 2475 3116 -197 2213 84 14 24 chr1 137774757 137775054 -104889299 - AluY SINE Alu -17 294 1 1080 278 128 27 chr1 137775054 137775119 -104889234 + L2 LINE L2 3116 3173 -140 678 281 29 8 chr1 137775179 137775500 -104888853 + MLT1J LTR MaLR 77 462 -49 387 284 95 0 chr1 137775568 137775684 -104888669 + L2 LINE L2 3185 3311 -2 564 272 0 14 chr1 137776609 137776756 -104887597 + MIR SINE MIR 118 262 0 1954 188 34 67 chr1 137778267 137778793 -104885560 + MLT2B3 LTR ERVL 1 509 -45 251 167 74 0 chr1 137778830 137778884 -104885469 + MLT2A2 LTR ERVL 396 453 0 310 271 193 24 chr1 137779715 137779881 -104884472 + MIR SINE MIR 4 197 -65 1893 167 0 0 chr1 137780262 137780561 -104883792 - AluJb SINE Alu -13 299 1 404 265 23 101 chr1 137780650 137780751 -104883602 + L1MEd LINE L1 913 1020 -5099 3940 187 82 10 chr1 137780751 137781555 -104882798 + MER21B LTR ERV1 1 862 -1 404 265 23 101 chr1 137781555 137781710 -104882643 + L1MEd LINE L1 1020 1149 -4970 318 336 9 17 chr1 137781734 137781850 -104882503 - MER91C DNA MER1_type 0 140 26 296 314 138 16 chr1 137781858 137782170 -104882183 + HAL1 LINE L1 1272 1621 -886 1722 161 4 4 chr1 137782462 137782729 -104881624 + AluJo SINE Alu 11 277 -35 239 353 12 23 chr1 137782874 137783132 -104881221 + L1MEd LINE L1 2502 2756 -3373 1084 190 5 5 chr1 137783540 137783740 -104880613 + AluJb SINE Alu 74 273 -39 2206 131 0 0 chr1 137784152 137784449 -104879904 + AluSx SINE Alu 1 297 -15 3953 82 40 9 chr1 137785467 137786044 -104878309 - LTR61 LTR ERV1 0 595 1 1781 142 33 0 chr1 137786065 137786388 -104877965 - AluJb SINE Alu 0 332 1 434 200 89 104 chr1 137786411 137786681 -104877672 + L1MC4a LINE L1 4375 4640 -1506 1449 282 114 14 chr1 137786694 137787279 -104877074 + L2 LINE L2 2025 2668 -646 303 330 85 67 chr1 137788107 137788437 -104875916 + L1M4 LINE L1 653 988 -5861 203 143 13 52 chr1 137790663 137790740 -104873613 + GA-rich Low_complexity Low_complexity 2 75 0 225 70 53 53 chr1 137790785 137790842 -104873511 + GA-rich Low_complexity Low_complexity 4 60 0 1463 136 195 21 chr1 137791530 137791817 -104872536 - MER1B DNA MER1_type 0 337 1 1129 58 0 0 chr1 137791933 137792108 -104872245 - AluY SINE Alu 0 320 146 455 250 45 70 chr1 137792551 137792707 -104871646 + MIR3 SINE MIR 20 171 -37 2002 222 132 2 chr1 137793266 137793789 -104870564 + MLT1E LTR MaLR 3 593 0 458 340 46 13 chr1 137794323 137794675 -104869678 + L1M4 LINE L1 3289 3684 -3164 473 219 118 14 chr1 137794860 137795179 -104869174 + L1MC4a LINE L1 5080 5422 -740 934 230 201 20 chr1 137795270 137795678 -104868675 + L1ME3A LINE L1 5681 6162 -8 687 95 0 0 chr1 137795861 137795956 -104868397 + AluSg/x SINE Alu 211 305 -4 347 308 110 26 chr1 137796340 137796613 -104867740 + L1MC4a LINE L1 5621 5916 -1892 362 132 33 11 chr1 137796630 137796721 -104867632 + (TA)n Simple_repeat Simple_repeat 1 93 0 299 328 23 23 chr1 137799592 137799723 -104864630 + MLT1H LTR MaLR 104 234 -315 539 251 28 60 chr1 137800035 137800286 -104864067 - L1ME LINE L1 -309 5812 5570 567 238 133 17 chr1 137800319 137800500 -104863853 - MIR SINE MIR -20 242 41 1730 116 19 19 chr1 137800848 137801106 -104863247 + L1PA11 LINE L1 5912 6169 -5 2316 96 0 3 chr1 137801178 137801471 -104862882 - AluSc SINE Alu -17 292 1 1911 173 0 3 chr1 137801653 137801953 -104862400 + AluJb SINE Alu 1 299 -13 1464 230 22 52 chr1 137803311 137803716 -104860637 + L1MEc LINE L1 45 437 -5959 1349 229 64 31 chr1 137803740 137804163 -104860190 - LTR56 LTR ERV1 0 445 9 600 250 92 0 chr1 137804186 137804350 -104860003 + L1MEc LINE L1 437 615 -5781 1130 233 82 75 chr1 137804351 137804571 -104859782 + L1MEc LINE L1 995 1212 -5184 5200 103 30 1 chr1 137804571 137805273 -104859080 + LTR30 LTR ERV1 1 722 0 1130 233 82 75 chr1 137805273 137805306 -104859047 + L1MEc LINE L1 1212 1243 -5153 4752 95 14 6 chr1 137805306 137805936 -104858417 + MER41B LTR ERV1 1 635 0 1130 233 82 75 chr1 137805936 137805994 -104858359 + L1MEc LINE L1 1243 1299 -5097 713 190 247 103 chr1 137805994 137806488 -104857865 + MER34B LTR ERV1 1 565 0 1130 233 82 75 chr1 137806488 137806759 -104857594 + L1MEc LINE L1 1299 1583 -4813 252 336 9 16 chr1 137806766 137806901 -104857452 - L1ME LINE L1 -547 5619 5485 3274 108 38 57 chr1 137806901 137807523 -104856830 - MER4B LTR ERV1 0 779 1 1185 301 97 30 chr1 137807534 137808662 -104855691 - L1P3 LINE L1 -671 5483 4283 1772 163 21 0 chr1 137808755 137809038 -104855315 - AluJb SINE Alu -23 289 1 271 298 61 5 chr1 137809301 137809434 -104854919 - MIR SINE MIR -63 145 26 1965 100 19 8 chr1 137809663 137809922 -104854431 + AluSg SINE Alu 1 262 -48 1119 142 6 0 chr1 137809941 137810123 -104854230 + AluJo SINE Alu 120 302 0 2933 171 149 34 chr1 137810698 137810899 -104853454 + LTR48 LTR ERV1 1 178 -609 2082 130 0 3 chr1 137810899 137811245 -104853108 + AluSx SINE Alu 2 346 0 2933 171 149 34 chr1 137811245 137811748 -104852605 + LTR48 LTR ERV1 178 787 0 2000 153 7 0 chr1 137812424 137812725 -104851628 - AluSx SINE Alu -9 303 1 24 53 0 0 chr1 137813194 137813232 -104851121 + AT_rich Low_complexity Low_complexity 1 38 0 2842 99 11 5 chr1 137813574 137813947 -104850406 + THE1C LTR MaLR 1 375 0 9806 104 94 3 chr1 137813947 137815396 -104848957 + THE1C-int LTR MaLR 1 1580 0 2858 97 16 5 chr1 137815396 137815767 -104848586 + THE1C LTR MaLR 1 375 0 1463 247 211 9 chr1 137815846 137815875 -104848478 - LTR50 LTR ERVL 0 795 773 1107 236 163 8 chr1 137815875 137816133 -104848220 + AluSg SINE Alu 1 298 -2 1463 247 211 9 chr1 137816133 137816734 -104847619 - LTR50 LTR ERVL -22 773 38 2757 26 0 0 chr1 137816777 137817082 -104847271 - AluYb8 SINE Alu -13 305 1 220 264 242 0 chr1 137817537 137817628 -104846725 - L2 LINE L2 0 3313 3201 1849 144 0 0 chr1 137817646 137817909 -104846444 - AluSx SINE Alu -49 263 1 372 316 61 30 chr1 137818001 137818232 -104846121 + L1ME LINE L1 5349 5586 -535 328 127 18 0 chr1 137818269 137818324 -104846029 + MER116 DNA Mariner 1 56 -24 240 343 0 14 chr1 137819326 137819399 -104844954 + tRNA-Gly-GGG tRNA tRNA 1 72 -2 342 288 97 64 chr1 137821021 137821995 -104842358 + L1MEc LINE L1 1005 2007 -4208 2130 84 49 7 chr1 137821995 137822280 -104842073 + AluSc SINE Alu 1 297 -12 342 288 97 64 chr1 137822280 137822737 -104841616 + L1MEc LINE L1 2007 2447 -3768 212 364 78 19 chr1 137823204 137823358 -104840995 - L2 LINE L2 -591 2723 2561 473 181 0 0 chr1 137824845 137824917 -104839436 + tRNA-Gly-GGG tRNA tRNA 3 74 0 1117 93 0 0 chr1 137825111 137825250 -104839103 + AluSx SINE Alu 22 160 -152 316 152 209 25 chr1 137825756 137825853 -104838500 - AluSc SINE Alu 0 299 197 3784 137 47 3 chr1 137825874 137826452 -104837901 + LTR26 LTR ERV1 1 603 0 225 83 0 0 chr1 137826531 137826567 -104837786 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 332 272 116 45 chr1 137826666 137826890 -104837463 + HAL1b LINE L1 252 491 -857 3175 161 17 70 chr1 137827453 137827972 -104836381 + LTR9 LTR ERV1 1 481 -131 2154 29 115 4 chr1 137827972 137828250 -104836103 - AluY SINE Alu -2 309 1 3175 161 17 70 chr1 137828250 137828376 -104835977 + LTR9 LTR ERV1 481 612 0 1926 74 0 0 chr1 137829094 137829386 -104834967 + AluY SINE Alu 54 345 0 633 303 99 59 chr1 137829490 137829863 -104834490 + REP3 LTR ERV 59 446 -116 2136 113 36 10 chr1 137830203 137830505 -104833848 + AluSq SINE Alu 1 310 -3 253 350 26 0 chr1 137830516 137830633 -104833720 + HERVL40 LTR ERVL 1098 1217 -4313 409 292 88 46 chr1 137830776 137830992 -104833361 + HERVL40 LTR ERVL 1393 1617 -3913 1195 246 17 49 chr1 137830992 137831280 -104833073 + HERVL40 LTR ERVL 2050 2328 -3202 522 157 34 11 chr1 137831306 137831395 -104832958 + HERVL40 LTR ERVL 3509 3599 -1931 272 242 16 0 chr1 137831397 137831459 -104832894 - L1MDa LINE L1 -4689 1851 1789 240 263 32 21 chr1 137832443 137832538 -104831815 - L1MC4 LINE L1 -1336 6706 6611 35 24 0 0 chr1 137832649 137832691 -104831662 + AT_rich Low_complexity Low_complexity 1 42 0 220 164 75 15 chr1 137832783 137832850 -104831503 + (TTAAA)n Simple_repeat Simple_repeat 3 73 0 21 36 0 0 chr1 137833104 137833132 -104831221 + AT_rich Low_complexity Low_complexity 1 28 0 264 290 109 22 chr1 137833363 137833501 -104830852 + L1ME2 LINE L1 5509 5658 -2150 396 171 43 0 chr1 137833622 137833692 -104830661 - tRNA-Glu-GAG tRNA tRNA -2 73 1 454 287 102 0 chr1 137834214 137834371 -104829982 + L2 LINE L2 2345 2517 -797 325 121 15 15 chr1 137834394 137834460 -104829893 + CT-rich Low_complexity Low_complexity 4 69 0 956 207 138 24 chr1 137835195 137835614 -104828739 + L1ME2 LINE L1 5651 6155 -9 347 268 0 0 chr1 137836124 137836195 -104828158 - tRNA-His-CAC tRNA tRNA -3 72 2 321 185 14 0 chr1 137836485 137836564 -104827789 + L1M2 LINE L1 5372 5451 -700 558 158 0 90 chr1 137836571 137836704 -104827649 + MLT1A1 LTR MaLR 1 121 -244 2488 187 50 42 chr1 137836914 137837460 -104826893 - MER89 LTR ERV1 -9 550 1 574 132 0 0 chr1 137837792 137837868 -104826485 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 263 253 25 25 chr1 137838077 137838156 -104826197 + MIR SINE MIR 81 159 -103 504 253 28 60 chr1 137838309 137838569 -104825784 - L1M1 LINE L1 -377 5744 5497 1961 128 7 0 chr1 137838606 137838887 -104825466 + AluSx SINE Alu 1 283 -29 1917 195 80 18 chr1 137839139 137839529 -104824824 - MLT2D LTR ERVL 0 414 1 2808 143 38 6 chr1 137840241 137840711 -104823642 - L1MB3 LINE L1 -149 6034 5550 450 177 40 60 chr1 137840823 137840960 -104823393 - L1MB3 LINE L1 -562 5559 5414 601 238 37 78 chr1 137841042 137841174 -104823179 + MIR SINE MIR 29 148 -114 1888 124 10 27 chr1 137841174 137841508 -104822845 + AluSx SINE Alu 1 312 0 601 238 37 78 chr1 137841508 137841619 -104822734 + MIR SINE MIR 148 262 0 2259 92 3 0 chr1 137844755 137845086 -104819267 + AluSx SINE Alu 1 332 0 402 343 29 0 chr1 137845089 137845229 -104819124 - MIR3 SINE MIR -31 177 34 22 0 0 0 chr1 137845254 137845276 -104819077 + AT_rich Low_complexity Low_complexity 1 22 0 6404 136 38 11 chr1 137845293 137846510 -104817843 - L1MC1 LINE L1 0 6333 5087 672 187 19 0 chr1 137846517 137846624 -104817729 + FRAM SINE Alu 1 107 -69 24 0 0 0 chr1 137846676 137846700 -104817653 + AT_rich Low_complexity Low_complexity 1 24 0 2626 219 27 18 chr1 137846764 137847431 -104816922 - L1MC1 LINE L1 -1052 5094 4422 1909 100 96 0 chr1 137847488 137847768 -104816585 - AluY SINE Alu -4 307 1 1438 119 5 9 chr1 137847768 137847978 -104816375 - AluSg/x SINE Alu -10 302 94 1639 216 25 14 chr1 137847979 137848341 -104816012 - L1MC1 LINE L1 -1906 4240 3875 34 24 0 0 chr1 137850099 137850140 -104814213 + AT_rich Low_complexity Low_complexity 1 41 0 1637 156 13 38 chr1 137850480 137850794 -104813559 - AluJo SINE Alu -2 310 5 2135 124 0 0 chr1 137852080 137852387 -104811966 - AluSq SINE Alu -6 307 1 494 311 49 0 chr1 137852498 137852662 -104811691 - MIR SINE MIR -12 250 79 1541 245 76 14 chr1 137854569 137855002 -104809351 - MLT1C LTR MaLR -2 465 6 31 44 0 0 chr1 137858251 137858296 -104806057 + AT_rich Low_complexity Low_complexity 1 45 0 14099 212 35 17 chr1 137858650 137859445 -104804908 - L1P4 LINE L1 -695 5528 4749 1841 149 7 7 chr1 137859445 137859746 -104804607 - AluSx SINE Alu -11 301 1 14099 212 35 17 chr1 137859746 137860003 -104804350 - L1P4 LINE L1 -1474 4749 4498 306 0 0 0 chr1 137860003 137860037 -104804316 + (TG)n Simple_repeat Simple_repeat 1 34 0 14099 212 35 17 chr1 137860037 137862220 -104802133 - L1P4 LINE L1 -1725 4498 2116 1850 115 54 0 chr1 137862220 137862499 -104801854 - AluSq SINE Alu -17 296 3 14099 212 35 17 chr1 137862499 137863933 -104800420 - L1P4 LINE L1 -4107 2116 709 411 53 70 0 chr1 137865414 137865471 -104798882 - Alu SINE Alu -22 290 230 654 0 0 14 chr1 137865545 137865619 -104798734 + tRNA-Val-GTG tRNA tRNA 1 73 -3 1702 204 19 27 chr1 137866904 137867277 -104797076 + MLT1A2 LTR MaLR 5 374 0 1839 113 0 45 chr1 137867562 137867888 -104796465 - AluSc SINE Alu 0 313 1 577 45 0 0 chr1 137869427 137869494 -104794859 + tRNA-Gly-GGG tRNA tRNA 1 67 -7 2282 83 13 0 chr1 137870189 137870490 -104793863 + AluSx SINE Alu 1 305 -7 320 206 15 15 chr1 137870746 137870814 -104793539 + tRNA-His-CAC tRNA tRNA 5 72 -3 606 138 0 11 chr1 137871270 137871364 -104792989 - AluSg/x SINE Alu -25 287 195 809 258 132 33 chr1 137871381 137871921 -104792432 - L1ME2 LINE L1 -16 6148 5461 919 121 189 47 chr1 137871924 137872114 -104792239 + AluSg/x SINE Alu 80 296 -14 443 235 66 46 chr1 137872114 137872383 -104791970 - L1ME2 LINE L1 -703 5471 5200 3140 183 28 26 chr1 137872396 137873012 -104791341 - MER49 LTR ERV1 0 923 307 670 245 170 53 chr1 137874188 137874681 -104789672 - L1ME2 LINE L1 -899 5247 4697 1038 159 97 18 chr1 137874724 137874950 -104789403 + MLT1A1 LTR MaLR 122 365 0 232 223 45 139 chr1 137875833 137876035 -104788318 + MER20 DNA MER1_type 1 183 -36 324 311 30 24 chr1 137876090 137876254 -104788099 - L2 LINE L2 -799 2515 2351 428 132 0 0 chr1 137876736 137876804 -104787549 + tRNA-Glu-GAG tRNA tRNA 5 72 -3 674 207 64 0 chr1 137877842 137877982 -104786371 + U1 snRNA snRNA 3 151 -14 388 191 0 0 chr1 137878475 137878543 -104785810 - tRNA-His-CAC tRNA tRNA -2 73 6 2106 88 3 14 chr1 137878608 137878902 -104785451 - AluSx SINE Alu -21 291 1 550 96 0 0 chr1 137879579 137879652 -104784701 + tRNA-Asn-AAC tRNA tRNA 2 74 -3 529 149 132 50 chr1 137879676 137879797 -104784556 + FLAM_C SINE Alu 1 131 -2 1817 121 0 0 chr1 137879951 137880208 -104784145 - AluSx SINE Alu -55 257 1 241 242 23 78 chr1 137880272 137880400 -104783953 - L1MEc LINE L1 -4614 1782 1662 1894 95 0 39 chr1 137880433 137880600 -104783753 - AluY SINE Alu -16 295 144 423 0 0 0 chr1 137880600 137880647 -104783706 + (TA)n Simple_repeat Simple_repeat 1 47 0 1894 95 0 39 chr1 137880647 137880785 -104783568 - AluY SINE Alu -167 144 2 427 180 16 31 chr1 137880795 137880923 -104783430 - L1MEc LINE L1 -5275 1121 996 1463 136 0 0 chr1 137880979 137881200 -104783153 - AluSp SINE Alu 0 313 93 381 164 16 0 chr1 137881207 137881268 -104783085 - tRNA-Val-GTG tRNA tRNA -14 62 1 1287 180 107 0 chr1 137883225 137883486 -104780867 + AluJb SINE Alu 1 289 -23 194 183 37 134 chr1 137884468 137884550 -104779803 - MIR3 SINE MIR -120 88 15 536 82 0 14 chr1 137885283 137885356 -104778997 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 208 319 14 28 chr1 137885587 137885659 -104778694 - MIR SINE MIR -114 148 78 477 277 83 68 chr1 137885726 137885918 -104778435 + L1ME LINE L1 7 208 -5862 4841 167 36 9 chr1 137885918 137886817 -104777536 - MER49 LTR ERV1 0 923 1 477 277 83 68 chr1 137886817 137886963 -104777390 + L1ME LINE L1 208 350 -5720 1256 149 0 14 chr1 137886964 137887179 -104777174 + L1MA4 LINE L1 6078 6289 -11 886 136 0 0 chr1 137887179 137887311 -104777042 - AluSq/x SINE Alu -180 132 1 2322 60 0 20 chr1 137887343 137887644 -104776709 - AluY SINE Alu -16 295 1 445 221 9 0 chr1 137887644 137887757 -104776596 + L1MA10 LINE L1 6221 6334 0 383 144 11 33 chr1 137887757 137887847 -104776506 - MER74B LTR ERVL -534 88 1 519 243 209 37 chr1 137887863 137888188 -104776165 + L1ME1 LINE L1 5678 6058 -108 749 171 8 8 chr1 137888204 137888327 -104776026 - FLAM_C SINE Alu -19 124 2 325 219 101 8 chr1 137888339 137888458 -104775895 + L1ME3 LINE L1 6026 6155 -7 295 261 43 0 chr1 137889115 137889184 -104775169 - tRNA-His-CAC tRNA tRNA -3 72 1 210 191 29 15 chr1 137889520 137889588 -104774765 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 2020 174 35 0 chr1 137889588 137889932 -104774421 - MER57A LTR ERV1 -34 369 14 23 0 0 0 chr1 137889963 137889986 -104774367 + AT_rich Low_complexity Low_complexity 1 23 0 212 232 0 14 chr1 137890016 137890085 -104774268 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 621 226 91 52 chr1 137890115 137890424 -104773929 + L1MC4 LINE L1 7720 8040 -2 1090 200 152 50 chr1 137891039 137891470 -104772883 + MER66A LTR ERV1 100 478 0 185 173 58 0 chr1 137891485 137891537 -104772816 + (CAGGA)n Simple_repeat Simple_repeat 4 58 0 1282 177 160 84 chr1 137891544 137891900 -104772453 + MER66A-int LTR ERV1 732 1114 -5562 328 241 108 114 chr1 137891962 137892128 -104772225 + MER66A-int LTR ERV1 2938 3102 -3574 8877 276 45 31 chr1 137892233 137894447 -104769906 + MER66A-int LTR ERV1 1211 3392 -4364 1726 176 14 0 chr1 137894447 137894742 -104769611 + AluSx SINE Alu 7 305 -7 8877 276 45 31 chr1 137894742 137896295 -104768058 + MER66A-int LTR ERV1 3392 4811 -2945 2003 118 0 0 chr1 137896295 137896583 -104767770 + AluSx SINE Alu 11 298 -14 8877 276 45 31 chr1 137896583 137897633 -104766720 + MER66A-int LTR ERV1 4811 5845 -1911 681 175 33 0 chr1 137902731 137902851 -104761502 + Tigger2 DNA MER2_type 2334 2457 -261 1228 212 96 91 chr1 137903119 137903389 -104760964 + MER66A-int LTR ERV1 4548 4815 -2941 2141 115 6 42 chr1 137903389 137903701 -104760652 - AluSg SINE Alu -9 301 1 1228 212 96 91 chr1 137903701 137903888 -104760465 + MER66A-int LTR ERV1 4815 6113 -1643 2459 132 3 0 chr1 137903930 137904279 -104760074 + MER66A-int LTR ERV1 6327 6676 0 1123 206 110 83 chr1 137904325 137904791 -104759562 + MER66A LTR ERV1 100 478 0 204 375 104 7 chr1 137906040 137906184 -104758169 - MIR3 SINE MIR -7 201 44 210 37 0 0 chr1 137906395 137906422 -104757931 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1955 104 48 57 chr1 137906425 137906741 -104757612 - AluSp SINE Alu 0 313 1 424 343 17 17 chr1 137907140 137907312 -104757041 + MER5B DNA MER1_type 7 178 0 1490 138 0 0 chr1 137908274 137908491 -104755862 - AluSg/x SINE Alu -1 309 93 2009 152 7 0 chr1 137910194 137910497 -104753856 - AluSx SINE Alu -7 305 1 1617 183 7 14 chr1 137911294 137911584 -104752769 + AluJo SINE Alu 1 288 -24 360 331 78 13 chr1 137913745 137913927 -104750426 - MIR SINE MIR -63 145 3 3295 236 78 81 chr1 137913967 137914449 -104749904 + L1MEc LINE L1 35 517 -5879 1973 133 34 77 chr1 137914449 137914801 -104749552 + MER1B DNA MER1_type 1 337 0 1485 137 22 9 chr1 137914804 137915030 -104749323 + L1MC1 LINE L1 6100 6328 -5 3295 236 78 81 chr1 137915030 137915446 -104748907 + L1MEc LINE L1 519 935 -5461 1745 169 18 0 chr1 137915446 137915748 -104748605 + AluSx SINE Alu 1 307 0 3295 236 78 81 chr1 137915748 137916451 -104747902 + L1MEc LINE L1 935 1637 -4759 1949 168 0 0 chr1 137916527 137916825 -104747528 + AluJb SINE Alu 1 298 -14 1929 156 0 38 chr1 137917361 137917675 -104746678 - AluSx SINE Alu -10 302 1 2085 135 3 3 chr1 137918000 137918297 -104746056 + AluSx SINE Alu 1 297 -15 2188 119 153 21 chr1 137918375 137918753 -104745600 + MSTA LTR MaLR 1 428 0 183 307 89 30 chr1 137918767 137918868 -104745485 + L2 LINE L2 3151 3257 -15 * 229 303 83 37 chr1 137918867 137918976 -104745377 - L3 LINE CR1 -2 1575 1462 533 272 94 43 chr1 137919434 137919669 -104744684 - MIR SINE MIR -10 252 6 237 283 75 9 chr1 137920113 137920219 -104744134 - MIR SINE MIR -116 146 34 1954 142 26 3 chr1 137920223 137920526 -104743827 - AluSx SINE Alu -2 310 1 426 263 212 15 chr1 137920802 137921000 -104743353 - MIR SINE MIR -21 241 5 181 280 151 43 chr1 137921949 137922042 -104742311 + MIR SINE MIR 45 147 -61 512 179 9 9 chr1 137922429 137922535 -104741818 + L1MB8 LINE L1 6064 6169 -9 885 161 7 20 chr1 137923192 137923341 -104741012 + AluJb SINE Alu 1 147 -165 1919 102 20 0 chr1 137923341 137923595 -104740758 + AluY SINE Alu 1 259 -52 535 217 0 0 chr1 137923596 137923702 -104740651 + AluJo/FRAM SINE Alu 206 311 -1 1542 207 58 7 chr1 137923786 137923965 -104740388 - AluJo SINE Alu -2 310 109 219 103 0 0 chr1 137923965 137924004 -104740349 + (TG)n Simple_repeat Simple_repeat 2 40 0 1542 207 58 7 chr1 137924004 137924119 -104740234 - AluJo SINE Alu -203 109 1 2009 205 35 31 chr1 137924834 137925275 -104739078 - L1M4 LINE L1 -3365 2781 2336 3505 145 0 4 chr1 137925275 137925772 -104738581 - LOR1a LTR ERV1 0 497 3 2009 205 35 31 chr1 137925772 137925813 -104738540 - L1M4 LINE L1 -3810 2336 2297 572 209 167 65 chr1 137925813 137926028 -104738325 + MLT1E2 LTR MaLR 60 296 -330 356 127 0 0 chr1 137926906 137926961 -104737392 + MER4B LTR ERV1 556 610 0 2701 97 77 35 chr1 137926963 137927418 -104736935 + MER4B-int LTR ERV1 1 474 -6124 1097 52 0 0 chr1 137927418 137927552 -104736801 + AluY SINE Alu 178 311 0 997 174 111 178 chr1 137927552 137927834 -104736519 + MER4B-int LTR ERV1 506 805 -5793 417 20 0 0 chr1 137927834 137927884 -104736469 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 997 174 111 178 chr1 137927884 137927914 -104736439 + MER4B-int LTR ERV1 805 835 -5763 2099 115 0 38 chr1 137927914 137928227 -104736126 + AluY SINE Alu 5 305 -6 997 174 111 178 chr1 137928227 137928447 -104735906 + MER4B-int LTR ERV1 835 1003 -5595 1224 202 95 0 chr1 137928544 137928797 -104735556 + L1M4c LINE L1 18 294 -6090 4565 118 5 0 chr1 137928797 137929442 -104734911 + HERVH LTR ERV1 4502 5149 -2564 1317 163 0 5 chr1 137929443 137929664 -104734689 + HERVH LTR ERV1 5600 5819 -1894 2385 98 50 13 chr1 137929664 137930040 -104734313 + HERVH LTR ERV1 7324 7713 0 3047 104 29 18 chr1 137930040 137930483 -104733870 + LTR7 LTR ERV1 1 448 -2 2634 131 34 23 chr1 137930489 137930931 -104733422 - LTR49 LTR ERV1 -148 447 1 298 234 56 47 chr1 137930971 137931078 -104733275 + L2 LINE L2 2409 2516 -798 28 61 0 0 chr1 137932141 137932190 -104732163 + AT_rich Low_complexity Low_complexity 1 49 0 593 265 114 4 chr1 137932295 137932559 -104731794 + L1M4c LINE L1 1728 2020 -4543 519 197 38 8 chr1 137932653 137932785 -104731568 + L1M4c LINE L1 2170 2305 -4258 245 298 48 0 chr1 137932817 137932921 -104731432 + L1MC/D LINE L1 5634 5742 -2066 635 53 0 0 chr1 137934014 137934089 -104730264 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1019 156 0 59 chr1 137934536 137934722 -104729631 + AluSg/x SINE Alu 134 308 -4 1965 168 8 26 chr1 137934956 137935307 -104729046 - MER72 LTR ERV1 -221 501 157 2885 108 91 9 chr1 137935309 137935772 -104728581 - MER51D LTR ERV1 -2 655 155 1771 135 0 8 chr1 137935775 137936072 -104728281 - AluSx SINE Alu 0 318 24 205 346 63 16 chr1 137936517 137936644 -104727709 - MIR SINE MIR -109 153 21 31 68 0 0 chr1 137937646 137937705 -104726648 + AT_rich Low_complexity Low_complexity 1 59 0 423 338 98 59 chr1 137937867 137938225 -104726128 + L2 LINE L2 2895 3266 -6 26 0 0 0 chr1 137938871 137938897 -104725456 + AT_rich Low_complexity Low_complexity 1 26 0 1751 117 79 28 chr1 137941151 137941441 -104722912 - AluSq SINE Alu -8 305 1 351 297 74 0 chr1 137941822 137941970 -104722383 + MER103 DNA DNA 8 166 0 26 30 0 0 chr1 137942443 137942476 -104721877 + AT_rich Low_complexity Low_complexity 1 33 0 303 263 183 11 chr1 137942702 137942877 -104721476 + MER90 LTR ERV1 100 304 -310 2075 113 3 21 chr1 137942886 137943177 -104721176 - AluSg SINE Alu -24 286 1 1158 125 34 0 chr1 137943179 137943355 -104720998 - AluSg/x SINE Alu -7 305 124 276 289 10 10 chr1 137943355 137943452 -104720901 + MER90 LTR ERV1 290 386 -228 * 362 245 28 38 chr1 137943447 137943553 -104720800 + MER90 LTR ERV1 505 609 -5 284 287 122 55 chr1 137943563 137943744 -104720609 - HAL1 LINE L1 -998 1509 1317 605 239 175 80 chr1 137943833 137943883 -104720470 - MLT1H LTR MaLR -16 533 489 2300 80 3 7 chr1 137943883 137944182 -104720171 + AluY SINE Alu 1 298 -13 605 239 175 80 chr1 137944182 137944554 -104719799 - MLT1H LTR MaLR -60 489 71 2327 57 4 0 chr1 137944618 137944931 -104719422 - AluY SINE Alu 0 314 1 2128 93 3 0 chr1 137944953 137945244 -104719109 - AluSc SINE Alu -17 292 1 2185 85 11 0 chr1 137945255 137945613 -104718740 - AluSq SINE Alu 0 361 1 635 53 0 0 chr1 137946159 137946234 -104718119 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1158 109 32 0 chr1 137946681 137946837 -104717516 + AluSg/x SINE Alu 134 294 -18 246 333 5 79 chr1 137946850 137947066 -104717287 - L1MC/D LINE L1 -2068 5740 5541 2021 168 8 17 chr1 137947069 137947420 -104716933 - MER72 LTR ERV1 -218 504 157 2973 107 79 8 chr1 137947422 137947890 -104716463 - MER51D LTR ERV1 -2 655 155 456 37 49 12 chr1 137947893 137947975 -104716378 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 1835 150 0 7 chr1 137947975 137948255 -104716098 - AluSx SINE Alu -31 281 4 22 0 0 0 chr1 137948259 137948281 -104716072 + AT_rich Low_complexity Low_complexity 1 22 0 1256 207 9 56 chr1 137948625 137948944 -104715409 + AluSx SINE Alu 9 312 0 480 78 39 13 chr1 137948944 137949021 -104715332 - LTR49-int LTR ERV1 -4965 1366 1288 326 301 0 0 chr1 137949026 137949099 -104715254 - tRNA-Glu-GAG tRNA tRNA 0 75 3 6234 136 71 51 chr1 137949099 137950285 -104714068 - LTR49-int LTR ERV1 -5122 1209 1 3280 139 32 25 chr1 137950287 137950878 -104713475 - LTR49 LTR ERV1 0 595 1 285 290 20 0 chr1 137950918 137951018 -104713335 + L2 LINE L2 2409 2510 -804 32 43 0 0 chr1 137952105 137952151 -104712202 + AT_rich Low_complexity Low_complexity 1 46 0 622 279 78 4 chr1 137952256 137952757 -104711596 + L1MC/D LINE L1 1555 2138 -4258 239 298 48 0 chr1 137952789 137952893 -104711460 + L1MC/D LINE L1 5703 5811 -2066 509 96 0 14 chr1 137954783 137954856 -104709497 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 181 319 14 28 chr1 137955087 137955159 -104709194 - MIR SINE MIR -114 148 78 511 271 83 68 chr1 137955227 137955419 -104708934 + L1ME LINE L1 7 208 -5862 4735 162 35 30 chr1 137955419 137956338 -104708015 - MER49 LTR ERV1 0 923 1 511 271 83 68 chr1 137956338 137956484 -104707869 + L1ME LINE L1 208 350 -5720 1223 158 0 14 chr1 137956485 137956700 -104707653 + L1MA4 LINE L1 6078 6289 -11 942 136 0 0 chr1 137956700 137956832 -104707521 - AluSq/x SINE Alu -180 132 1 2429 63 0 20 chr1 137956864 137957165 -104707188 - AluY SINE Alu -16 295 1 425 230 9 0 chr1 137957165 137957278 -104707075 + L1MA10 LINE L1 6221 6334 0 407 133 11 33 chr1 137957278 137957368 -104706985 - MER74B LTR ERVL -534 88 1 727 213 162 38 chr1 137957369 137957683 -104706670 + L1ME3 LINE L1 5662 6014 -148 23 0 0 0 chr1 137957692 137957715 -104706638 + AT_rich Low_complexity Low_complexity 1 23 0 767 168 8 8 chr1 137957728 137957853 -104706500 - FLAM_C SINE Alu -17 126 2 336 210 101 8 chr1 137957865 137957984 -104706369 + L1ME3 LINE L1 6026 6155 -7 294 261 43 0 chr1 137958654 137958723 -104705630 - tRNA-His-CAC tRNA tRNA -3 72 1 210 191 29 15 chr1 137959061 137959129 -104705224 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 2045 171 35 0 chr1 137959129 137959473 -104704880 - MER57A LTR ERV1 -34 369 14 23 0 0 0 chr1 137959504 137959527 -104704826 + AT_rich Low_complexity Low_complexity 1 23 0 212 232 0 14 chr1 137959557 137959626 -104704727 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 672 219 94 54 chr1 137959667 137959964 -104704389 + L1MC4 LINE L1 7732 8040 -2 1084 208 150 49 chr1 137960579 137961010 -104703343 + MER66A LTR ERV1 100 478 0 236 184 61 0 chr1 137961023 137961072 -104703281 + (CAGGA)n Simple_repeat Simple_repeat 2 53 0 1264 177 160 84 chr1 137961079 137961435 -104702918 + MER66A-int LTR ERV1 732 1114 -5562 315 241 108 114 chr1 137961497 137961663 -104702690 + MER66A-int LTR ERV1 2938 3102 -3574 8838 275 44 31 chr1 137961852 137963982 -104700371 + MER66A-int LTR ERV1 1302 3403 -4353 1839 175 14 0 chr1 137963982 137964274 -104700079 + AluSx SINE Alu 7 302 -10 8838 275 44 31 chr1 137964274 137965826 -104698527 + MER66A-int LTR ERV1 3403 4810 -2946 2160 118 0 0 chr1 137965826 137966115 -104698238 + AluSx SINE Alu 11 299 -13 8838 275 44 31 chr1 137966115 137967165 -104697188 + MER66A-int LTR ERV1 4810 5845 -1911 668 183 33 0 chr1 137972264 137972384 -104691969 + Tigger2 DNA MER2_type 2334 2457 -261 1101 237 129 25 chr1 137972652 137972909 -104691444 + MER66A-int LTR ERV1 4608 4837 -2919 2127 107 10 45 chr1 137972909 137973217 -104691136 - AluSg SINE Alu -13 297 1 1101 237 129 25 chr1 137973217 137973404 -104690949 + MER66A-int LTR ERV1 4837 6113 -1643 2484 129 3 0 chr1 137973446 137973795 -104690558 + MER66A-int LTR ERV1 6327 6676 0 1139 213 97 84 chr1 137973861 137974327 -104690026 + MER66A LTR ERV1 100 478 0 180 372 109 7 chr1 137975589 137975726 -104688627 - MIR3 SINE MIR -14 194 44 315 85 0 0 chr1 137975937 137975984 -104688369 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 2035 99 48 48 chr1 137975993 137976306 -104688047 - AluSp SINE Alu 0 313 1 396 335 17 23 chr1 137976705 137976878 -104687475 + MER5B DNA MER1_type 7 178 0 1425 152 0 0 chr1 137977828 137978045 -104686308 - AluSg/x SINE Alu -1 311 95 2073 139 7 0 chr1 137979750 137980053 -104684300 - AluSx SINE Alu -7 305 1 1594 183 7 14 chr1 137980849 137981139 -104683214 + AluJo SINE Alu 1 288 -24 308 308 81 9 chr1 137983331 137983457 -104680896 - MIR SINE MIR -63 145 25 3300 229 78 83 chr1 137983522 137984004 -104680349 + L1MEc LINE L1 35 518 -5878 1852 133 34 77 chr1 137984004 137984356 -104679997 + MER1B DNA MER1_type 1 337 0 1434 141 18 9 chr1 137984359 137984586 -104679767 + L1MC1 LINE L1 6100 6328 -5 3300 229 78 83 chr1 137984586 137985006 -104679347 + L1MEc LINE L1 520 941 -5455 1802 165 18 0 chr1 137985006 137985308 -104679045 + AluSx SINE Alu 1 307 0 3300 229 78 83 chr1 137985308 137986011 -104678342 + L1MEc LINE L1 941 1637 -4759 1905 174 0 0 chr1 137986087 137986385 -104677968 + AluJb SINE Alu 1 298 -14 1938 156 0 38 chr1 137986921 137987235 -104677118 - AluSx SINE Alu -10 302 1 2139 128 3 3 chr1 137987561 137987858 -104676495 + AluSx SINE Alu 1 297 -15 1999 122 153 21 chr1 137987936 137988314 -104676039 + MSTA LTR MaLR 1 428 0 199 303 83 37 chr1 137988428 137988537 -104675816 - L3 LINE CR1 -2 1575 1462 477 280 50 46 chr1 137988995 137989213 -104675140 - MIR SINE MIR -10 252 34 228 292 26 26 chr1 137989674 137989787 -104674566 - MIR SINE MIR -116 146 34 1988 144 23 3 chr1 137989791 137990096 -104674257 - AluSx SINE Alu -1 311 1 375 258 212 15 chr1 137990372 137990570 -104673783 - MIR SINE MIR -21 241 5 503 170 9 9 chr1 137992013 137992119 -104672234 + L1MB8 LINE L1 6064 6169 -9 832 195 0 13 chr1 137992777 137992926 -104671427 + AluJb SINE Alu 1 147 -165 2472 97 0 0 chr1 137992926 137993237 -104671116 + AluY SINE Alu 1 311 0 306 196 0 0 chr1 137993257 137993308 -104671045 + LTR49 LTR ERV1 263 313 -282 713 141 42 63 chr1 137993308 137993450 -104670903 + MER4-int LTR ERV1 865 1003 -5595 4848 154 79 94 chr1 137993547 137993850 -104670503 + L1M4c LINE L1 18 324 -6060 1877 146 36 0 chr1 137993850 137994125 -104670228 + AluSx SINE Alu 1 285 -27 369 0 0 0 chr1 137994125 137994166 -104670187 + (CA)n Simple_repeat Simple_repeat 2 42 0 4848 154 79 94 chr1 137994166 137994271 -104670082 + L1M4c LINE L1 323 428 -5956 235 160 160 0 chr1 137994271 137994321 -104670032 + MLT1J LTR MaLR 188 245 -266 4848 154 79 94 chr1 137994321 137995134 -104669219 + L1M4c LINE L1 428 1271 -5113 2085 128 3 0 chr1 137995170 137995452 -104668901 - AluSp SINE Alu -30 283 1 1051 130 49 5 chr1 137995454 137995638 -104668715 + L1M4c LINE L1 1257 1448 -4936 2119 103 11 0 chr1 137995756 137996135 -104668218 + AluSq SINE Alu 1 382 0 2202 85 3 0 chr1 137996146 137996441 -104667912 + AluSc SINE Alu 1 296 -13 2386 64 0 0 chr1 137996463 137996777 -104667576 + AluY SINE Alu 1 314 0 582 241 175 80 chr1 137996841 137997213 -104667140 + MLT1H LTR MaLR 71 489 -60 2323 80 3 7 chr1 137997213 137997512 -104666841 - AluY SINE Alu -13 298 1 582 241 175 80 chr1 137997512 137997562 -104666791 + MLT1H LTR MaLR 489 533 -16 307 294 130 40 chr1 137997651 137997828 -104666525 + HAL1 LINE L1 1317 1509 -998 364 245 28 38 chr1 137997838 137997944 -104666409 - MER90 LTR ERV1 -5 609 505 319 268 10 10 chr1 137997939 137998036 -104666317 - MER90 LTR ERV1 -228 386 290 * 1094 142 34 0 chr1 137998036 137998212 -104666141 + AluSg/x SINE Alu 124 305 -7 2117 118 3 20 chr1 137998214 137998518 -104665835 + AluSg SINE Alu 1 299 -11 561 235 124 5 chr1 137998543 137998754 -104665599 - MER90 LTR ERV1 -346 268 1 568 155 0 0 chr1 137998786 137998870 -104665483 + AluSx SINE Alu 2 85 -227 1529 269 13 36 chr1 137998870 137999319 -104665034 - LTR2 LTR ERV1 0 449 11 1550 96 5 23 chr1 137999323 137999542 -104664811 + AluSx SINE Alu 79 293 -19 1088 220 58 52 chr1 137999542 137999906 -104664447 + HAL1 LINE L1 1543 1908 -599 2419 90 3 0 chr1 137999917 138000229 -104664124 - AluSq SINE Alu 0 313 1 249 324 98 0 chr1 138000230 138000332 -104664021 - MIR SINE MIR -117 145 34 588 117 0 0 chr1 138000648 138000725 -104663628 - tRNA-Asn-AAC tRNA tRNA 0 77 1 202 308 67 0 chr1 138001185 138001289 -104663064 + L2 LINE L2 3198 3308 -5 755 193 156 80 chr1 138001573 138001946 -104662407 + ERVL-F LTR ERVL 5322 5722 -42 284 175 16 0 chr1 138001951 138002014 -104662339 + GA-rich Low_complexity Low_complexity 3 66 0 397 303 171 11 chr1 138002050 138002225 -104662128 + MLT2F LTR ERVL 1 203 -460 446 121 11 110 chr1 138002470 138002561 -104661792 + MER30 DNA MER1_type 1 82 -148 1578 108 4 87 chr1 138002621 138002898 -104661455 + AluSx SINE Alu 1 254 -58 260 224 15 112 chr1 138002995 138003129 -104661224 - AluSq/x SINE Alu -181 122 2 1017 206 0 0 chr1 138003247 138003412 -104660941 - U1 snRNA snRNA 0 165 1 370 311 105 16 chr1 138003813 138004003 -104660350 - Charlie4 DNA MER1_type -3 1958 1752 317 158 0 0 chr1 138004004 138004061 -104660292 + AluSx SINE Alu 238 294 -6 231 280 143 0 chr1 138004140 138004315 -104660038 + HAL1 LINE L1 1064 1263 -1244 317 158 0 0 chr1 138004459 138004516 -104659837 - Alu SINE Alu -6 295 239 412 295 105 16 chr1 138004517 138004707 -104659646 + Charlie4 DNA MER1_type 1752 1958 -3 2248 89 14 0 chr1 138004927 138005220 -104659133 + AluSx SINE Alu 9 305 -7 264 59 59 0 chr1 138005323 138005374 -104658979 + (TA)n Simple_repeat Simple_repeat 1 54 0 2124 77 45 18 chr1 138005498 138005784 -104658569 + AluSx SINE Alu 1 294 -18 2475 99 51 6 chr1 138006462 138006817 -104657536 + MLT2A2 LTR ERVL 24 394 -59 1141 99 37 0 chr1 138006818 138006979 -104657374 + BC200 scRNA scRNA 1 167 -33 455 45 91 0 chr1 138006981 138007047 -104657306 + MLT2A2 LTR ERVL 382 453 0 2236 96 3 20 chr1 138007072 138007374 -104656979 + AluSp SINE Alu 1 297 -16 725 197 61 133 chr1 138007450 138007559 -104656794 - LTR49 LTR ERV1 -245 350 235 1984 124 10 7 chr1 138007559 138007685 -104656668 + AluSx SINE Alu 3 127 -185 2277 78 0 4 chr1 138007685 138008002 -104656351 + AluY SINE Alu 1 316 0 1984 124 10 7 chr1 138008002 138008163 -104656190 + AluSx SINE Alu 127 293 -19 725 197 61 133 chr1 138008163 138008347 -104656006 - LTR49 LTR ERV1 -360 235 78 346 318 17 12 chr1 138008578 138008751 -104655602 + MER41B LTR ERV1 258 431 -204 423 153 12 2 chr1 138008976 138009055 -104655298 - LTR49 LTR ERV1 -464 121 11 1009 166 36 81 chr1 138009057 138009304 -104655049 - MER31B LTR ERV1 -218 248 13 3407 112 10 123 chr1 138009304 138009599 -104654754 - LTR24C LTR ERV1 0 635 308 2060 147 0 10 chr1 138009599 138009912 -104654441 - AluSx SINE Alu -2 310 1 3407 112 10 123 chr1 138009912 138010147 -104654206 - LTR24C LTR ERV1 -327 308 48 2261 104 7 0 chr1 138010147 138010455 -104653898 + AluY SINE Alu 1 310 -1 3407 112 10 123 chr1 138010455 138010562 -104653791 - LTR24C LTR ERV1 -587 48 83 2291 107 3 7 chr1 138010562 138010871 -104653482 - AluSp SINE Alu -5 308 1 3407 112 10 123 chr1 138010871 138010947 -104653406 - LTR24C LTR ERV1 -551 84 1 1391 229 13 68 chr1 138011076 138011473 -104652880 + MLT1A2 LTR MaLR 5 374 0 444 280 11 70 chr1 138011477 138011602 -104652751 + LTR33 LTR ERVL 344 456 -65 2417 78 0 0 chr1 138011602 138011898 -104652455 + AluY SINE Alu 1 296 -15 444 280 11 70 chr1 138011898 138011958 -104652395 + LTR33 LTR ERVL 456 518 -3 910 167 0 0 chr1 138011986 138012130 -104652223 - MLT1A1 LTR MaLR 0 365 222 1060 176 24 111 chr1 138012131 138012420 -104651933 - AluJb SINE Alu -44 268 5 3225 120 113 40 chr1 138012472 138013064 -104651289 - MER4D LTR ERV1 -268 635 1 192 40 0 0 chr1 138013432 138013457 -104650896 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 456 312 81 17 chr1 138013542 138013776 -104650577 + MLT1L LTR MaLR 360 608 -7 21 0 0 0 chr1 138013944 138013965 -104650388 + AT_rich Low_complexity Low_complexity 1 21 0 4765 18 0 0 chr1 138014016 138014530 -104649823 - L1PA3 LINE L1 0 6155 5642 2813 28 3 0 chr1 138014530 138014857 -104649496 + L1PA3 LINE L1 5347 5674 -481 22 0 0 0 chr1 138019505 138019527 -104644826 + AT_rich Low_complexity Low_complexity 1 22 0 405 115 0 0 chr1 138020665 138020726 -104643627 - MER41B LTR ERV1 -88 547 487 786 218 0 123 chr1 138020971 138021191 -104643162 + MER77 LTR ERV1 1 193 -412 245 212 0 15 chr1 138021224 138021290 -104643063 + (TA)n Simple_repeat Simple_repeat 2 66 0 334 304 74 0 chr1 138023639 138023787 -104640566 - MER103 DNA DNA 0 166 8 1988 116 0 44 chr1 138024189 138024508 -104639845 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr1 138026750 138026771 -104637582 + AT_rich Low_complexity Low_complexity 1 21 0 230 267 70 47 chr1 138027148 138027234 -104637119 + MER102a DNA MER1_type 240 327 -3 430 338 98 59 chr1 138027417 138027775 -104636578 - L2 LINE L2 -6 3266 2895 31 68 0 0 chr1 138027937 138027996 -104636357 + AT_rich Low_complexity Low_complexity 1 59 0 201 204 41 0 chr1 138029076 138029125 -104635228 + MIR SINE MIR 103 153 -109 297 315 27 18 chr1 138030184 138030295 -104634058 - MIR3 SINE MIR -31 177 66 414 39 0 0 chr1 138032873 138032925 -104631428 + (GGA)n Simple_repeat Simple_repeat 2 53 0 27 0 0 0 chr1 138033287 138033314 -104631039 + GC_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr1 138033553 138033578 -104630775 + AT_rich Low_complexity Low_complexity 1 25 0 283 289 107 16 chr1 138034056 138034177 -104630176 + L2 LINE L2 3141 3272 0 4975 20 18 0 chr1 138034470 138035015 -104629338 + L1PA3 LINE L1 5597 6151 -4 267 152 379 0 chr1 138035059 138035125 -104629228 - MER31A LTR ERV1 -394 91 1 8881 175 48 48 chr1 138035131 138035956 -104628397 - MER31A-int LTR ERV1 -26 5853 5030 2143 97 3 7 chr1 138035956 138036246 -104628107 - AluSg SINE Alu -12 298 10 8881 175 48 48 chr1 138036246 138037932 -104626421 - MER31A-int LTR ERV1 -849 5030 3077 1427 177 134 98 chr1 138037993 138038427 -104625926 - MER31A-int LTR ERV1 -3408 1528 1064 1936 106 64 3 chr1 138038427 138038710 -104625643 + AluSx SINE Alu 1 300 -12 1427 177 134 98 chr1 138038710 138038895 -104625458 - MER31A-int LTR ERV1 -3872 1064 887 679 214 19 71 chr1 138039051 138039261 -104625092 - MER31A-int LTR ERV1 -4537 399 201 * 796 192 61 131 chr1 138039228 138039525 -104624828 - MER31A-int LTR ERV1 -4646 290 15 2811 145 56 7 chr1 138039561 138040023 -104624330 - MER31A LTR ERV1 0 485 1 2219 101 0 7 chr1 138040280 138040577 -104623776 - AluSq SINE Alu -18 295 1 2445 63 3 3 chr1 138040953 138041252 -104623101 + AluY SINE Alu 1 299 -12 300 326 44 41 chr1 138041762 138042032 -104622321 - HAL1 LINE L1 -860 1647 1377 22 0 0 0 chr1 138042232 138042254 -104622099 + AT_rich Low_complexity Low_complexity 1 22 0 7212 70 10 2 chr1 138042388 138043646 -104620707 - L1PA6 LINE L1 -3 6151 4890 1455 203 13 0 chr1 138043983 138044219 -104620134 - MER8 DNA MER2_type 0 239 1 369 222 22 0 chr1 138044246 138044336 -104620017 + L1MC4 LINE L1 6616 6707 -1335 1887 189 5 58 chr1 138044336 138044748 -104619605 - MLT1B LTR MaLR 0 390 1 27 62 0 0 chr1 138044777 138044825 -104619528 + AT_rich Low_complexity Low_complexity 1 48 0 2039 133 20 0 chr1 138045447 138045740 -104618613 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 138045831 138045853 -104618500 + AT_rich Low_complexity Low_complexity 1 22 0 594 290 50 32 chr1 138046034 138046255 -104618098 + MIR SINE MIR 20 244 -18 292 343 103 49 chr1 138046405 138047058 -104617295 - L2 LINE L2 -823 2491 1804 180 0 0 0 chr1 138047061 138047081 -104617272 + (T)n Simple_repeat Simple_repeat 1 20 0 407 79 0 0 chr1 138047195 138047258 -104617095 - AluSx SINE Alu -2 308 246 1545 243 209 8 chr1 138047369 138047958 -104616395 - LTR50 LTR ERVL -51 744 38 184 235 0 0 chr1 138048450 138048501 -104615852 - L2 LINE L2 0 3313 3263 1824 152 0 0 chr1 138048559 138048822 -104615531 - AluSx SINE Alu -49 263 1 343 313 65 30 chr1 138048914 138049144 -104615209 + L1ME LINE L1 5349 5586 -535 323 127 18 0 chr1 138049181 138049236 -104615117 + MER116 DNA Mariner 1 56 -24 236 343 0 14 chr1 138050238 138050311 -104614042 + tRNA-Gly-GGG tRNA tRNA 1 72 -2 304 285 91 63 chr1 138051918 138052911 -104611442 + L1MEc LINE L1 991 2001 -4214 2097 103 48 7 chr1 138052911 138053203 -104611150 + AluSc SINE Alu 1 304 -5 304 285 91 63 chr1 138053203 138053663 -104610690 + L1MEc LINE L1 2001 2447 -3768 445 181 0 0 chr1 138055771 138055843 -104608510 + tRNA-Gly-GGG tRNA tRNA 3 74 0 1110 101 0 0 chr1 138056037 138056176 -104608177 + AluSx SINE Alu 22 160 -152 336 141 209 25 chr1 138056682 138056779 -104607574 - AluSc SINE Alu 0 299 197 3550 133 48 5 chr1 138056800 138057378 -104606975 + LTR26 LTR ERV1 1 603 0 202 0 91 0 chr1 138057457 138057490 -104606863 + T-rich Low_complexity Low_complexity 2 37 0 301 277 116 45 chr1 138057587 138057811 -104606542 + HAL1b LINE L1 252 491 -857 3025 163 19 60 chr1 138058374 138059012 -104605341 + LTR9 LTR ERV1 1 612 0 1985 65 0 0 chr1 138059730 138060010 -104604343 + AluY SINE Alu 54 333 0 658 298 99 59 chr1 138060114 138060487 -104603866 + REP3 LTR ERV 59 446 -116 2232 100 36 10 chr1 138060827 138061128 -104603225 + AluSq SINE Alu 1 309 -4 390 296 88 46 chr1 138061399 138061615 -104602738 + HERVL40 LTR ERVL 1393 1617 -3913 1202 243 17 49 chr1 138061615 138061903 -104602450 + HERVL40 LTR ERVL 2050 2328 -3202 532 157 34 11 chr1 138061928 138062017 -104602336 + HERVL40 LTR ERVL 3509 3599 -1931 267 242 16 0 chr1 138062019 138062081 -104602272 - L1MDa LINE L1 -4689 1851 1789 226 225 22 67 chr1 138063075 138063164 -104601189 - L1MC4 LINE L1 -1346 6696 6612 * 272 174 47 47 chr1 138063085 138063171 -104601182 + L1MC4 LINE L1 6615 6700 -1342 35 24 0 0 chr1 138063266 138063308 -104601045 + AT_rich Low_complexity Low_complexity 1 42 0 236 149 75 15 chr1 138063400 138063467 -104600886 + (TTAAA)n Simple_repeat Simple_repeat 3 73 0 21 36 0 0 chr1 138063721 138063749 -104600604 + AT_rich Low_complexity Low_complexity 1 28 0 241 297 109 22 chr1 138063980 138064118 -104600235 + L1MC/D LINE L1 5509 5658 -2150 371 186 43 0 chr1 138064239 138064309 -104600044 - tRNA-Glu-GAG tRNA tRNA -2 73 1 446 265 106 0 chr1 138064838 138064989 -104599364 + L2 LINE L2 2351 2517 -797 325 121 15 15 chr1 138065012 138065078 -104599275 + CT-rich Low_complexity Low_complexity 4 69 0 25 31 0 0 chr1 138066019 138066051 -104598302 + AT_rich Low_complexity Low_complexity 1 32 0 210 91 0 0 chr1 138066269 138066302 -104598051 + (A)n Simple_repeat Simple_repeat 1 33 0 285 295 27 9 chr1 138066391 138066503 -104597850 + HAL1 LINE L1 441 554 -1953 2595 235 34 22 chr1 138066575 138067800 -104596553 + L1ME2 LINE L1 4738 5977 -187 2403 112 0 0 chr1 138067924 138068236 -104596117 - AluSx SINE Alu 0 312 1 365 222 91 10 chr1 138068242 138068341 -104596012 - MIR SINE MIR -105 157 51 686 246 75 25 chr1 138068672 138069099 -104595254 + L1M2 LINE L1 4982 5440 -743 1981 160 19 33 chr1 138069117 138069479 -104594874 + MLT1A1 LTR MaLR 1 357 -8 1142 218 112 14 chr1 138069481 138070068 -104594285 + L1ME2 LINE L1 5471 6155 -9 366 257 0 0 chr1 138070575 138070649 -104593704 - tRNA-His-CAC tRNA tRNA 0 75 2 322 200 14 0 chr1 138070939 138071018 -104593335 + L1M2 LINE L1 5372 5451 -700 574 150 0 90 chr1 138071025 138071158 -104593195 + MLT1A1 LTR MaLR 1 121 -244 2494 187 50 42 chr1 138071368 138071914 -104592439 - MER89 LTR ERV1 -9 550 1 580 105 0 0 chr1 138072238 138072314 -104592039 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 255 241 25 25 chr1 138072523 138072602 -104591751 + MIR SINE MIR 81 159 -103 458 285 32 49 chr1 138072755 138073039 -104591314 - L1ME LINE L1 -377 5744 5466 2027 121 7 0 chr1 138073052 138073333 -104591020 + AluSx SINE Alu 1 283 -29 1800 195 80 18 chr1 138073586 138073976 -104590377 - MLT2D LTR ERVL 0 414 1 1453 223 30 3 chr1 138074369 138074674 -104589679 - L1PA15-16 LINE L1 -6425 424 112 3723 174 33 10 chr1 138074707 138075395 -104588958 + MER39 LTR ERV1 1 704 -3 243 274 36 0 chr1 138076474 138076558 -104587795 - MIR SINE MIR -71 191 105 2536 53 0 7 chr1 138076566 138076866 -104587487 - AluY SINE Alu -13 298 1 503 268 0 25 chr1 138077160 138077317 -104587036 - MIR SINE MIR -1 261 109 10172 35 1 2 chr1 138078768 138079981 -104584372 + L1P LINE L1 3287 4498 -1648 324 296 85 32 chr1 138080130 138080319 -104584034 - L2 LINE L2 -856 2458 2260 31 44 0 0 chr1 138081135 138081180 -104583173 + AT_rich Low_complexity Low_complexity 1 45 0 1407 227 124 9 chr1 138081185 138081427 -104582926 - MLT1C LTR MaLR 0 467 254 2156 121 13 0 chr1 138081427 138081725 -104582628 - AluSq SINE Alu -11 302 1 1407 227 124 9 chr1 138081725 138081901 -104582452 - MLT1C LTR MaLR -213 254 1 1883 203 100 24 chr1 138081913 138082382 -104581971 + MLT1D LTR MaLR 1 505 0 895 247 62 24 chr1 138082386 138082726 -104581627 + L1MC4 LINE L1 7690 8042 0 524 274 170 11 chr1 138083220 138083497 -104580856 + L2 LINE L2 2259 2579 -735 581 291 176 18 chr1 138083513 138083963 -104580390 + L2 LINE L2 2739 3253 -60 186 71 0 0 chr1 138085786 138085814 -104578539 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 351 65 0 0 chr1 138087114 138087160 -104577193 + (CGGGA)n Simple_repeat Simple_repeat 4 49 0 1466 151 3 91 chr1 138090365 138090683 -104573670 + AluJo SINE Alu 1 290 -22 396 0 0 0 chr1 138090820 138090864 -104573489 + (TG)n Simple_repeat Simple_repeat 2 45 0 324 0 0 0 chr1 138091174 138091210 -104573143 + (TG)n Simple_repeat Simple_repeat 1 36 0 294 73 0 0 chr1 138091210 138091251 -104573102 + (GA)n Simple_repeat Simple_repeat 2 42 0 1749 155 18 4 chr1 138091251 138091529 -104572824 - AluJo SINE Alu -30 282 1 230 301 101 89 chr1 138091540 138091917 -104572436 + L2 LINE L2 2286 2657 -657 1658 91 144 0 chr1 138091917 138092180 -104572173 - AluY SINE Alu 0 301 1 230 301 101 89 chr1 138092180 138092212 -104572141 + L2 LINE L2 2657 2687 -627 198 0 0 0 chr1 138092212 138092234 -104572119 + (TTGG)n Simple_repeat Simple_repeat 3 24 0 230 301 101 89 chr1 138092234 138092318 -104572035 + L2 LINE L2 2687 2786 -528 208 323 65 48 chr1 138092345 138092469 -104571884 + MIR SINE MIR 15 140 -122 896 166 7 7 chr1 138092529 138092680 -104571673 + FRAM SINE Alu 8 158 -18 2375 94 0 3 chr1 138093001 138093343 -104571010 - AluSc SINE Alu 0 341 1 216 0 0 0 chr1 138093548 138093572 -104570781 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2232 105 0 3 chr1 138093750 138094044 -104570309 + AluSx SINE Alu 1 293 -19 438 150 0 30 chr1 138094045 138094145 -104570208 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 587 221 159 6 chr1 138094161 138094324 -104570029 - MER5A DNA MER1_type 0 189 2 243 0 0 0 chr1 138095991 138096018 -104568335 + (A)n Simple_repeat Simple_repeat 1 27 0 1196 121 19 19 chr1 138097297 138097503 -104566850 + MER2 DNA MER2_type 1 206 -139 226 243 171 0 chr1 138097978 138098048 -104566305 + L2 LINE L2 2212 2293 -1021 199 330 104 9 chr1 138098379 138098494 -104565859 + L2 LINE L2 3142 3267 -5 456 173 49 0 chr1 138099047 138099128 -104565225 - AluSg/x SINE Alu -13 296 212 235 143 24 0 chr1 138099129 138099171 -104565182 + MLT1B LTR MaLR 348 390 0 2203 83 0 54 chr1 138100422 138100735 -104563618 + AluSq SINE Alu 2 297 -16 1016 118 0 0 chr1 138100954 138101089 -104563264 + AluSq/x SINE Alu 1 135 -177 2547 77 0 0 chr1 138101089 138101444 -104562909 + AluY SINE Alu 1 355 0 324 307 96 65 chr1 138101484 138101557 -104562796 - L2 LINE L2 -864 2450 2381 2306 95 7 3 chr1 138101557 138101862 -104562491 - AluSx SINE Alu -6 306 1 324 307 96 65 chr1 138101862 138102234 -104562119 - L2 LINE L2 -933 2381 1991 386 250 115 58 chr1 138102328 138102484 -104561869 - MIR SINE MIR -78 184 20 236 330 160 0 chr1 138102686 138102786 -104561567 + L2 LINE L2 3143 3258 -14 1894 178 85 89 chr1 138103080 138103518 -104560835 + MLT1D LTR MaLR 1 438 -67 2490 80 0 0 chr1 138103518 138103819 -104560534 - AluSq SINE Alu -11 302 2 1894 178 85 89 chr1 138103819 138103887 -104560466 + MLT1D LTR MaLR 438 505 0 2698 146 65 16 chr1 138104341 138104780 -104559573 + Tigger4(Zombi) DNA MER2_type 1 470 -2261 2299 102 23 0 chr1 138104780 138105083 -104559270 + AluSx SINE Alu 1 310 -2 2698 146 65 16 chr1 138105083 138105149 -104559204 + Tigger4(Zombi) DNA MER2_type 470 531 -2200 1006 99 66 0 chr1 138105145 138105297 -104559056 + Tigger4(Zombi) DNA MER2_type 2568 2729 -2 * 1592 192 102 45 chr1 138105297 138105739 -104558614 - MLT1C LTR MaLR 0 467 1 346 299 62 21 chr1 138106125 138106269 -104558084 + MIR SINE MIR 111 260 -2 251 350 49 28 chr1 138106503 138106646 -104557707 - MIR SINE MIR -70 192 47 2324 50 3 68 chr1 138106792 138107113 -104557240 + AluY SINE Alu 1 300 -11 808 182 6 31 chr1 138107842 138108001 -104556352 + MIR SINE MIR 108 262 0 223 316 195 19 chr1 138109145 138109360 -104554993 - L2 LINE L2 -125 3188 2936 222 91 0 0 chr1 138112049 138112082 -104552271 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1605 82 25 210 chr1 138113162 138113529 -104550824 - AluSx SINE Alu -13 299 1 269 209 233 0 chr1 138114008 138114094 -104550259 + L1ME3 LINE L1 6019 6124 -38 2278 96 10 3 chr1 138114099 138114400 -104549953 - AluSx SINE Alu -9 303 1 180 305 19 67 chr1 138114787 138114892 -104549461 - L2 LINE L2 0 3313 3214 * 322 282 97 0 chr1 138114874 138114977 -104549376 + L2 LINE L2 2944 3056 -257 2582 221 41 36 chr1 138115343 138115937 -104548416 + L1MC4 LINE L1 7221 7810 -232 1571 186 90 98 chr1 138115937 138116458 -104547895 - MLT2B1 LTR ERVL -3 517 1 2256 108 0 3 chr1 138116458 138116755 -104547598 + AluSx SINE Alu 1 296 -16 2582 221 41 36 chr1 138116755 138116945 -104547408 + L1MC4 LINE L1 7809 8010 -32 798 225 107 12 chr1 138116950 138117063 -104547290 + L2 LINE L2 2444 2545 -769 180 0 0 0 chr1 138117063 138117083 -104547270 + (CCA)n Simple_repeat Simple_repeat 2 21 0 798 225 107 12 chr1 138117083 138117213 -104547140 + L2 LINE L2 2545 2710 -604 698 197 47 42 chr1 138117222 138117283 -104547070 + L1MC4 LINE L1 7635 7694 -348 1455 167 78 35 chr1 138117283 138117630 -104546723 - MLT1A1 LTR MaLR -3 362 1 698 197 47 42 chr1 138117630 138117781 -104546572 + L1MC4 LINE L1 7694 7848 -194 2179 87 38 0 chr1 138117806 138118095 -104546258 + AluSp SINE Alu 1 300 -13 632 108 0 0 chr1 138118102 138118185 -104546168 + AluS SINE Alu 2 84 -228 1839 115 0 12 chr1 138118185 138118438 -104545915 + AluSx SINE Alu 52 301 -11 2237 106 3 3 chr1 138118443 138118746 -104545607 + AluSp SINE Alu 1 303 -10 21 36 0 0 chr1 138118778 138118806 -104545547 + AT_rich Low_complexity Low_complexity 1 28 0 259 257 29 44 chr1 138118806 138118942 -104545411 + L1MC4 LINE L1 7902 8035 -7 574 181 40 132 chr1 138118973 138119276 -104545077 + L1MC4 LINE L1 7768 8042 0 23 0 0 0 chr1 138119320 138119343 -104545010 + AT_rich Low_complexity Low_complexity 1 23 0 389 304 47 18 chr1 138119365 138119536 -104544817 + L2 LINE L2 2709 2884 -430 248 328 0 0 chr1 138119924 138119985 -104544368 + MIR3 SINE MIR 117 177 -31 282 321 60 8 chr1 138121467 138121601 -104542752 - L2 LINE L2 -217 3055 2915 2365 92 0 3 chr1 138121825 138122128 -104542225 - AluSq SINE Alu 0 313 12 2061 130 7 16 chr1 138122139 138122446 -104541907 - AluSx SINE Alu -7 305 2 2477 100 0 0 chr1 138122578 138122889 -104541464 - AluSq SINE Alu -2 311 1 2409 84 3 0 chr1 138123276 138123573 -104540780 + AluSq SINE Alu 1 298 -15 226 297 16 16 chr1 138123621 138123685 -104540668 - MER5A DNA MER1_type -83 106 43 2327 81 40 3 chr1 138126045 138126342 -104538011 - AluSx SINE Alu -4 308 1 624 242 145 9 chr1 138126831 138127058 -104537295 - MIR SINE MIR -3 259 2 2249 62 15 0 chr1 138129239 138129512 -104534841 - AluY SINE Alu -14 297 21 208 348 134 9 chr1 138129524 138129636 -104534717 + L2 LINE L2 3183 3308 -5 403 232 62 36 chr1 138132271 138132383 -104531970 - L2 LINE L2 0 3313 3199 420 307 44 0 chr1 138133104 138133241 -104531112 - MIR3 SINE MIR -11 197 55 225 207 0 35 chr1 138134671 138134729 -104529624 + G-rich Low_complexity Low_complexity 2 57 0 295 301 254 14 chr1 138135291 138135500 -104528853 + MIR SINE MIR 2 260 -2 484 248 47 38 chr1 138135626 138135799 -104528554 + MIR SINE MIR 18 189 -71 321 26 0 0 chr1 138136490 138136528 -104527825 + (CA)n Simple_repeat Simple_repeat 2 39 0 534 246 95 8 chr1 138139398 138139580 -104524773 + MIR3 SINE MIR 19 201 -7 22 35 0 0 chr1 138139797 138139826 -104524527 + AT_rich Low_complexity Low_complexity 1 29 0 2143 123 0 28 chr1 138140167 138140343 -104524010 - AluSx SINE Alu -4 308 143 2600 41 0 3 chr1 138140343 138140637 -104523716 - AluY SINE Alu -14 297 5 2143 123 0 28 chr1 138140637 138140777 -104523576 - AluSx SINE Alu -169 143 1 2681 49 0 3 chr1 138140812 138141118 -104523235 - AluY SINE Alu -6 305 1 1813 172 27 15 chr1 138141283 138141620 -104522733 - MER2 DNA MER2_type -3 341 1 723 239 157 24 chr1 138141676 138141931 -104522422 + L2 LINE L2 2050 2338 -976 216 364 63 14 chr1 138142113 138142256 -104522097 + L2 LINE L2 2905 3054 -218 2215 94 0 42 chr1 138142256 138142564 -104521789 - AluSq SINE Alu -18 295 1 1193 69 0 0 chr1 138143206 138143351 -104521002 - AluSg/x SINE Alu -2 310 166 582 179 147 118 chr1 138143374 138143653 -104520700 - L1MC4a LINE L1 -1849 5959 5673 2147 146 0 3 chr1 138143700 138144009 -104520344 + AluJb SINE Alu 1 308 -4 240 260 19 29 chr1 138144977 138145081 -104519272 + GA-rich Low_complexity Low_complexity 3 105 0 1862 161 13 7 chr1 138145098 138145402 -104518951 + AluJb SINE Alu 1 306 -6 308 321 251 29 chr1 138145590 138146508 -104517845 - L2 LINE L2 -236 3036 1901 1492 142 44 29 chr1 138150052 138150347 -104514006 - AluJb SINE Alu 0 303 5 818 210 122 15 chr1 138150420 138150625 -104513728 + MIR SINE MIR 3 229 -33 1754 144 23 3 chr1 138150668 138150974 -104513379 + AluSx SINE Alu 1 312 0 1440 125 26 58 chr1 138150985 138151292 -104513061 + MER21A LTR ERV1 1 317 -546 2085 97 26 16 chr1 138151292 138151601 -104512752 + AluSq SINE Alu 1 312 -1 183 333 46 35 chr1 138152057 138152144 -104512209 - L2 LINE L2 -845 2469 2382 1678 146 43 0 chr1 138152340 138152620 -104511733 + AluJb SINE Alu 1 292 -20 370 197 15 0 chr1 138152727 138152793 -104511560 + MIR3 SINE MIR 137 203 -5 203 288 62 0 chr1 138152903 138152983 -104511370 + MIR SINE MIR 96 180 -82 258 290 172 21 chr1 138153012 138153157 -104511196 + MIR SINE MIR 96 262 0 22 0 0 0 chr1 138153165 138153187 -104511166 + AT_rich Low_complexity Low_complexity 1 22 0 2125 198 159 14 chr1 138153234 138153425 -104510928 + MLT1E1 LTR MaLR 1 163 -491 2041 122 24 0 chr1 138153425 138153721 -104510632 - AluSx SINE Alu -9 303 1 2125 198 159 14 chr1 138153721 138154100 -104510253 + MLT1E1 LTR MaLR 163 654 0 183 211 0 0 chr1 138154701 138154739 -104509614 - MIR SINE MIR -5 257 220 2183 101 0 3 chr1 138154953 138155251 -104509102 + AluSg SINE Alu 1 297 -13 2190 108 0 3 chr1 138155265 138155571 -104508782 + AluSq SINE Alu 1 305 -8 1279 198 44 0 chr1 138155760 138156012 -104508341 + AluJo SINE Alu 29 291 -21 1009 194 51 58 chr1 138156019 138156312 -104508041 + L1MC5 LINE L1 7109 7399 -562 334 296 95 87 chr1 138156666 138157065 -104507288 + L2 LINE L2 2770 3175 -97 683 148 0 16 chr1 138160678 138160800 -104503553 + L1MB7 LINE L1 6055 6174 -10 1893 101 17 35 chr1 138160891 138161179 -104503174 + AluSx SINE Alu 1 283 -29 1918 110 30 30 chr1 138161185 138161484 -104502869 - AluSq SINE Alu -14 299 1 265 260 78 0 chr1 138162980 138163057 -104501296 - MIR SINE MIR -92 116 34 386 229 93 25 chr1 138164053 138164171 -104500182 + L2 LINE L2 3188 3313 0 201 293 0 49 chr1 138164710 138164833 -104499520 + CT-rich Low_complexity Low_complexity 3 119 0 2094 120 3 3 chr1 138166407 138166715 -104497638 + AluSx SINE Alu 1 308 -4 2038 84 0 71 chr1 138166866 138167188 -104497165 + AluSq SINE Alu 5 303 -10 2218 100 3 0 chr1 138167883 138168193 -104496160 + AluSx SINE Alu 1 311 -1 26 30 0 0 chr1 138169245 138169278 -104495075 + AT_rich Low_complexity Low_complexity 1 33 0 1311 170 96 38 chr1 138169720 138170114 -104494239 + MER96B DNA MER1_type 1 417 0 22 0 0 0 chr1 138170892 138170914 -104493439 + AT_rich Low_complexity Low_complexity 1 22 0 2270 79 3 0 chr1 138174014 138174326 -104490027 + AluSp SINE Alu 1 313 0 1946 99 59 0 chr1 138174333 138174606 -104489747 + AluSq SINE Alu 1 289 -24 2223 109 0 0 chr1 138174696 138174999 -104489354 + AluSx SINE Alu 1 303 -9 2249 106 0 0 chr1 138175008 138175319 -104489034 + AluSx SINE Alu 1 311 -1 624 264 90 32 chr1 138175635 138175885 -104488468 + MIR SINE MIR 2 261 -1 1858 111 6 77 chr1 138176217 138176541 -104487812 - AluSp SINE Alu -12 301 1 2296 98 0 0 chr1 138176601 138176908 -104487445 - AluSg SINE Alu -3 307 1 2270 61 6 64 chr1 138179027 138179222 -104485131 - AluY SINE Alu 0 311 141 2180 74 40 3 chr1 138179222 138179518 -104484835 - AluY SINE Alu -3 308 2 2270 61 6 64 chr1 138179518 138179652 -104484701 - AluY SINE Alu -170 141 1 294 254 44 70 chr1 138179883 138179997 -104484356 - MER5A DNA MER1_type -43 146 36 340 238 0 20 chr1 138180047 138180148 -104484205 - L1MC5 LINE L1 -50 7911 7813 41916 63 7 1 chr1 138180302 138186408 -104477945 - L1PA5 LINE L1 -3 6151 13 503 180 170 132 chr1 138186401 138186572 -104477781 - L1MC5 LINE L1 -110 7851 7688 * 2036 99 44 3 chr1 138186572 138186866 -104477487 - AluSg SINE Alu -4 306 1 503 180 170 132 chr1 138186866 138187000 -104477353 - L1MC5 LINE L1 -273 7688 7561 1752 141 0 48 chr1 138187000 138187194 -104477159 - AluJb SINE Alu -15 297 122 2153 125 3 0 chr1 138187194 138187505 -104476848 + AluSx SINE Alu 1 312 0 1752 141 0 48 chr1 138187505 138187622 -104476731 - AluJb SINE Alu -190 122 1 503 180 170 132 chr1 138187622 138187738 -104476615 - L1MC5 LINE L1 -400 7561 7413 351 293 162 79 chr1 138188190 138188645 -104475708 + L2 LINE L2 1752 2285 -1029 2040 108 37 0 chr1 138188645 138188942 -104475411 - AluSg SINE Alu -2 308 1 351 293 162 79 chr1 138188942 138189173 -104475180 + L2 LINE L2 2285 2495 -819 1091 72 0 0 chr1 138189181 138189319 -104475034 - AluSg/x SINE Alu -5 307 170 390 364 29 45 chr1 138189348 138189590 -104474763 + L2 LINE L2 2856 3093 -179 2046 124 13 0 chr1 138189608 138189914 -104474439 - AluSx SINE Alu -2 310 1 387 211 134 49 chr1 138191653 138191795 -104472558 - MER58B DNA MER1_type -6 335 182 231 103 0 0 chr1 138191797 138191836 -104472517 + (T)n Simple_repeat Simple_repeat 1 39 0 958 123 0 0 chr1 138192656 138192794 -104471559 - AluSq/x SINE Alu -174 138 1 1966 142 0 0 chr1 138192854 138193156 -104471197 - AluSx SINE Alu -10 302 1 2038 107 7 13 chr1 138193156 138193455 -104470898 - AluSq SINE Alu -16 297 1 1102 124 6 0 chr1 138193486 138193655 -104470698 + AluSg/x SINE Alu 138 307 -3 1135 162 25 0 chr1 138194341 138194539 -104469814 + MER20 DNA MER1_type 17 219 0 1877 110 4 0 chr1 138196280 138196543 -104467810 + AluSx SINE Alu 37 300 -12 425 134 0 0 chr1 138196481 138196548 -104467805 + AluSc SINE Alu 236 302 -7 2107 118 0 19 chr1 138196964 138197277 -104467076 - AluSx SINE Alu -1 311 5 1633 167 11 11 chr1 138197306 138197593 -104466760 + AluJb SINE Alu 1 287 -25 1025 87 0 0 chr1 138197757 138197884 -104466469 + AluY SINE Alu 1 127 -184 449 300 14 76 chr1 138197912 138197975 -104466378 - L1MC4a LINE L1 -1884 5924 5859 2027 134 0 10 chr1 138197975 138198266 -104466087 - AluSx SINE Alu -24 288 1 449 300 14 76 chr1 138198266 138198412 -104465941 - L1MC4a LINE L1 -1949 5859 5728 437 150 0 0 chr1 138198413 138198473 -104465880 + AluS SINE Alu 2 61 -257 2365 119 0 0 chr1 138198573 138198884 -104465469 - AluSx SINE Alu -1 311 1 350 281 11 0 chr1 138198912 138199001 -104465352 - L1MC4a LINE L1 -2144 5664 5575 359 281 86 0 chr1 138199623 138199751 -104464602 + L2 LINE L2 3088 3226 -87 376 247 105 86 chr1 138199753 138199941 -104464412 - MIR3 SINE MIR -21 187 1 283 365 56 30 chr1 138200213 138200410 -104463943 + L2 LINE L2 2644 2845 -469 * 574 174 70 35 chr1 138200404 138200519 -104463834 + MIR SINE MIR 108 226 -36 1490 226 113 35 chr1 138200597 138201022 -104463331 + L2 LINE L2 2856 3313 0 374 322 64 64 chr1 138201054 138201473 -104462880 + L2 LINE L2 2256 2674 -640 971 201 0 0 chr1 138201539 138201708 -104462645 + AluJb SINE Alu 133 301 -11 2133 103 0 0 chr1 138201741 138202051 -104462302 - AluSx SINE Alu 0 310 1 1751 88 0 9 chr1 138202124 138202351 -104462002 - AluSg/x SINE Alu -12 297 73 1130 117 0 19 chr1 138202352 138202514 -104461839 - AluSg/x SINE Alu -33 277 119 605 288 61 64 chr1 138202514 138202796 -104461557 + L2 LINE L2 2525 2806 -466 2295 112 0 28 chr1 138202796 138203117 -104461236 - AluSx SINE Alu 0 312 1 605 288 61 64 chr1 138203117 138203129 -104461224 + L2 LINE L2 2806 2817 -455 863 148 7 30 chr1 138203129 138203264 -104461089 - FLAM_A SINE Alu -1 132 1 605 288 61 64 chr1 138203264 138203532 -104460821 + L2 LINE L2 2817 3082 -190 275 306 251 5 chr1 138203613 138203812 -104460541 + MIR SINE MIR 5 252 -10 2190 98 20 0 chr1 138204015 138204310 -104460043 + AluSg SINE Alu 1 301 -9 181 326 0 0 chr1 138204344 138204390 -104459963 - MIR SINE MIR -141 67 22 2387 78 3 7 chr1 138204598 138204905 -104459448 + AluSp SINE Alu 1 306 -7 2057 117 3 3 chr1 138205111 138205427 -104458926 + AluSx SINE Alu 1 316 0 494 225 91 48 chr1 138206214 138206401 -104457952 + L2 LINE L2 3118 3312 -1 2165 87 18 7 chr1 138206497 138206783 -104457570 + AluSq SINE Alu 1 289 -24 320 336 60 8 chr1 138207332 138207466 -104456887 + L2 LINE L2 3171 3311 -2 242 255 147 20 chr1 138207669 138207771 -104456582 + MIR3 SINE MIR 73 187 -21 2168 94 31 0 chr1 138208714 138209001 -104455352 + AluSx SINE Alu 1 296 -16 1709 200 0 7 chr1 138209006 138209311 -104455042 + AluJb SINE Alu 1 303 -9 423 98 0 0 chr1 138209346 138209407 -104454946 + (GGA)n Simple_repeat Simple_repeat 1 61 0 652 307 45 66 chr1 138209500 138209787 -104454566 - L3 LINE CR1 -14 1563 1283 193 233 286 48 chr1 138210084 138210138 -104454215 - MIR SINE MIR 0 262 222 2412 50 0 0 chr1 138210138 138210456 -104453897 + AluY SINE Alu 1 318 0 193 233 286 48 chr1 138210456 138210610 -104453743 - MIR SINE MIR -40 222 3 809 193 0 0 chr1 138210733 138210878 -104453475 - AluJb SINE Alu -14 298 154 2543 38 0 32 chr1 138211112 138211428 -104452925 - AluY SINE Alu -5 306 1 355 240 116 25 chr1 138211485 138211606 -104452747 - L2 LINE L2 0 3272 3141 517 328 107 20 chr1 138211941 138212185 -104452168 - L2 LINE L2 -508 2806 2542 277 302 0 35 chr1 138212406 138212522 -104451831 + L2 LINE L2 1299 1410 -1904 438 314 130 74 chr1 138212734 138213400 -104450953 + L2 LINE L2 2046 2674 -598 2211 121 3 0 chr1 138213400 138213705 -104450648 + AluSx SINE Alu 1 306 -6 438 314 130 74 chr1 138213705 138213740 -104450613 + L2 LINE L2 2674 2706 -566 1607 166 7 37 chr1 138213740 138214035 -104450318 + AluJo SINE Alu 11 296 -16 438 314 130 74 chr1 138214035 138214463 -104449890 + L2 LINE L2 2706 3223 -49 324 0 0 0 chr1 138214513 138214549 -104449804 + (CA)n Simple_repeat Simple_repeat 1 36 0 695 264 38 19 chr1 138215325 138215537 -104448816 - MIR SINE MIR -44 218 3 669 301 53 9 chr1 138215630 138215856 -104448497 + MIR SINE MIR 21 256 -6 2324 98 3 0 chr1 138217466 138217762 -104446591 + AluSx SINE Alu 1 297 -15 1036 165 16 11 chr1 138217849 138218037 -104446316 + AluJo SINE Alu 118 306 -6 354 343 220 15 chr1 138218311 138218579 -104445774 - L2 LINE L2 -2 3270 2948 279 220 20 0 chr1 138218626 138218676 -104445677 + L2 LINE L2 3209 3259 -13 2201 89 21 3 chr1 138218992 138219283 -104445070 + AluSq SINE Alu 1 296 -17 460 270 38 49 chr1 138219835 138220020 -104444333 - MIR3 SINE MIR -6 202 20 2236 90 10 0 chr1 138220226 138220514 -104443839 + AluSc SINE Alu 1 291 -18 2214 114 16 0 chr1 138220746 138221052 -104443301 - AluSx SINE Alu -1 311 1 2065 118 21 0 chr1 138221149 138221437 -104442916 + AluSx SINE Alu 1 294 -18 195 321 189 0 chr1 138221603 138221709 -104442644 - L2 LINE L2 0 3272 3147 2475 69 0 16 chr1 138222581 138222887 -104441466 + AluSc SINE Alu 1 301 -8 1065 150 0 18 chr1 138222893 138223060 -104441293 - FRAM SINE Alu -16 160 1 2122 116 3 0 chr1 138223579 138223887 -104440466 + AluSx SINE Alu 1 309 0 276 225 25 38 chr1 138224798 138224878 -104439475 + MIR SINE MIR 57 135 -127 217 281 135 0 chr1 138224862 138224951 -104439402 + L2 LINE L2 3213 3313 0 * 188 286 91 0 chr1 138224949 138225026 -104439327 + MIR SINE MIR 131 214 -48 * 194 312 180 16 chr1 138226365 138226554 -104437799 + L2 LINE L2 2434 2653 -661 287 261 163 0 chr1 138227088 138227180 -104437173 + MIR3 SINE MIR 89 195 -13 901 165 0 0 chr1 138227866 138227999 -104436354 + FLAM_A SINE Alu 1 133 0 189 0 0 0 chr1 138228444 138228465 -104435888 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2085 136 3 3 chr1 138228476 138228785 -104435568 + AluSx SINE Alu 1 309 -3 267 232 196 0 chr1 138228841 138228953 -104435400 + L1ME3A LINE L1 5816 5949 -221 2163 116 0 0 chr1 138228980 138229298 -104435055 + AluSx SINE Alu 1 318 0 2591 56 0 0 chr1 138231253 138231559 -104432794 + AluY SINE Alu 1 306 -5 443 339 75 66 chr1 138231566 138231991 -104432362 + L2 LINE L2 2814 3242 -30 1359 174 4 8 chr1 138232562 138232815 -104431538 + AluSx SINE Alu 1 252 -60 242 167 0 0 chr1 138232920 138232956 -104431397 - Alu SINE Alu -266 36 1 1160 124 6 0 chr1 138232987 138233156 -104431197 + AluSg/x SINE Alu 140 309 -3 449 209 70 9 chr1 138233842 138233957 -104430396 + MER20 DNA MER1_type 17 138 -81 570 143 0 55 chr1 138234106 138234241 -104430112 + AluSg/x SINE Alu 194 323 0 180 77 0 0 chr1 138234485 138234511 -104429842 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1093 138 0 0 chr1 138234513 138234672 -104429681 - AluSg/x SINE Alu -30 280 122 208 308 99 33 chr1 138234849 138234940 -104429413 + L2 LINE L2 3145 3241 -31 2153 73 0 0 chr1 138235809 138236068 -104428285 + AluY SINE Alu 1 259 -52 308 283 145 36 chr1 138236847 138236985 -104427368 - MIR3 SINE MIR -46 162 10 228 35 0 0 chr1 138239576 138239605 -104424748 + (CA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr1 138240110 138240140 -104424213 + GC_rich Low_complexity Low_complexity 1 30 0 229 328 50 34 chr1 138240999 138241118 -104423235 - L2 LINE L2 -14 3299 3179 227 139 93 0 chr1 138241200 138241243 -104423110 + L2 LINE L2 3267 3313 0 309 240 91 50 chr1 138242487 138242608 -104421745 + MIR3 SINE MIR 3 128 -80 215 226 69 118 chr1 138243157 138243259 -104421094 + MER5B DNA MER1_type 37 133 -45 2427 73 3 0 chr1 138243275 138243575 -104420778 + AluY SINE Alu 1 301 -10 1756 157 10 10 chr1 138243597 138243896 -104420457 + AluJo SINE Alu 1 299 -13 1673 209 172 20 chr1 138243907 138244413 -104419940 + L1ME2 LINE L1 5582 6164 0 231 380 0 0 chr1 138244523 138244594 -104419759 + L2 LINE L2 3192 3262 -10 189 0 0 0 chr1 138244595 138244616 -104419737 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 2134 89 46 0 chr1 138244775 138245057 -104419296 - AluSx SINE Alu -4 308 14 283 146 0 0 chr1 138245057 138245098 -104419255 - Alu SINE Alu -261 41 1 805 239 68 60 chr1 138245144 138245705 -104418648 + MLT1L LTR MaLR 3 608 -7 774 190 43 147 chr1 138245848 138245931 -104418422 + MER63A DNA MER1_type 1 91 -1597 2360 97 10 0 chr1 138245931 138246240 -104418113 - AluSq SINE Alu -1 312 1 774 190 43 147 chr1 138246240 138246388 -104417965 + MER63A DNA MER1_type 91 208 -2 1881 114 37 4 chr1 138248846 138249147 -104415206 - AluSx SINE Alu 0 310 1 207 0 0 0 chr1 138249158 138249181 -104415172 + (TA)n Simple_repeat Simple_repeat 1 23 0 262 339 77 36 chr1 138251071 138251407 -104412946 + L2 LINE L2 2468 2817 -497 2152 102 0 7 chr1 138251574 138251858 -104412495 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr1 138251861 138251884 -104412469 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2345 96 0 7 chr1 138251924 138252227 -104412126 + AluSq SINE Alu 1 301 -12 1791 125 35 38 chr1 138252522 138252811 -104411542 - AluSx SINE Alu -24 288 1 358 359 53 23 chr1 138253040 138253171 -104411182 - L2 LINE L2 -4 3268 3134 2273 105 7 0 chr1 138253247 138253542 -104410811 - AluSp SINE Alu -16 297 1 2393 65 3 26 chr1 138255324 138255630 -104408723 + AluSq SINE Alu 2 300 -13 263 218 154 26 chr1 138255993 138256071 -104408282 - L2 LINE L2 -19 3294 3207 500 286 55 11 chr1 138256202 138256398 -104407955 + MIR SINE MIR 3 204 -58 261 120 27 13 chr1 138256756 138256831 -104407522 + (TA)n Simple_repeat Simple_repeat 2 77 0 285 316 155 6 chr1 138256832 138257000 -104407353 - L2 LINE L2 -412 2902 2710 194 280 11 32 chr1 138256995 138257088 -104407265 - L2 LINE L2 -92 3221 3131 * 319 300 247 0 chr1 138257809 138257999 -104406354 + MIR SINE MIR 20 256 -6 573 277 47 0 chr1 138259322 138259470 -104404883 + MIR SINE MIR 103 257 -5 2128 128 0 0 chr1 138260187 138260477 -104403876 - AluSg SINE Alu -20 290 1 715 245 79 87 chr1 138261250 138261305 -104403048 + L2 LINE L2 2693 2747 -566 2494 156 56 8 chr1 138261305 138261651 -104402702 + L1MB8 LINE L1 5674 6051 -127 2229 83 42 0 chr1 138261651 138261939 -104402414 - AluSq SINE Alu -13 300 1 2494 156 56 8 chr1 138261939 138262074 -104402279 + L1MB8 LINE L1 6051 6178 0 715 245 79 87 chr1 138262074 138262350 -104402003 + L2 LINE L2 2747 2995 -318 1973 116 0 0 chr1 138262350 138262617 -104401736 - AluSx SINE Alu -45 267 1 715 245 79 87 chr1 138262617 138262880 -104401473 + L2 LINE L2 2995 3259 -54 2275 72 41 0 chr1 138263501 138263792 -104400561 + AluY SINE Alu 1 303 -8 2447 70 3 0 chr1 138264530 138264829 -104399524 - AluSp SINE Alu -13 300 1 2233 79 0 67 chr1 138265950 138266279 -104398074 + AluSc SINE Alu 1 307 -2 21 36 0 0 chr1 138266423 138266451 -104397902 + AT_rich Low_complexity Low_complexity 1 28 0 2072 131 7 0 chr1 138266946 138267236 -104397117 + AluSx SINE Alu 1 292 -20 323 178 0 14 chr1 138267350 138267423 -104396930 + GA-rich Low_complexity Low_complexity 1 72 0 264 245 0 53 chr1 138267570 138267664 -104396689 + MER102a DNA MER1_type 240 328 -2 609 263 98 29 chr1 138267665 138267939 -104396414 - L1ME4a LINE L1 -295 5826 5534 2271 95 7 0 chr1 138268426 138268711 -104395642 - AluSc SINE Alu -22 287 1 398 237 52 21 chr1 138268745 138268842 -104395511 - MIR SINE MIR -138 124 25 2260 108 0 3 chr1 138269552 138269849 -104394504 + AluSq SINE Alu 1 296 -17 244 53 26 0 chr1 138269923 138269961 -104394392 + Charlie1 DNA MER1_type 1985 2023 -738 381 305 137 15 chr1 138270347 138270544 -104393809 - MIR SINE MIR -28 234 14 1894 146 10 0 chr1 138270650 138270945 -104393408 - AluJb SINE Alu -12 300 3 2071 132 10 0 chr1 138270956 138271252 -104393101 - AluSx SINE Alu -13 299 1 302 226 234 0 chr1 138272006 138272130 -104392223 + HAL1 LINE L1 10 162 -2345 1379 131 0 0 chr1 138272287 138272485 -104391868 - AluSg/x SINE Alu -12 300 103 26 0 0 0 chr1 138272499 138272525 -104391828 + AT_rich Low_complexity Low_complexity 1 26 0 1682 143 45 11 chr1 138272569 138272856 -104391497 - AluJo SINE Alu -15 297 1 2106 154 0 0 chr1 138273073 138273384 -104390969 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 138273500 138273521 -104390832 + AT_rich Low_complexity Low_complexity 1 21 0 261 310 42 17 chr1 138273530 138273817 -104390536 - L1ME4a LINE L1 -1112 5034 4741 372 270 105 67 chr1 138273968 138274084 -104390269 - L1ME4a LINE L1 -1534 4612 4502 2315 76 7 0 chr1 138274084 138274374 -104389979 - AluY SINE Alu -19 292 1 372 270 105 67 chr1 138274374 138274542 -104389811 - L1ME4a LINE L1 -1644 4502 4317 490 258 91 27 chr1 138274642 138274940 -104389413 - L1ME4a LINE L1 -1949 4197 3881 426 240 58 16 chr1 138275006 138275127 -104389226 - L2 LINE L2 -1 3312 3187 1234 299 75 77 chr1 138275131 138275403 -104388950 - L1ME4a LINE L1 -2353 3793 3522 2144 136 0 0 chr1 138275403 138275711 -104388642 - AluSx SINE Alu -4 308 1 1234 299 75 77 chr1 138275711 138275737 -104388616 - L1ME4a LINE L1 -2624 3522 3497 381 153 35 0 chr1 138275737 138275822 -104388531 - L1MB2 LINE L1 0 6171 6084 1234 299 75 77 chr1 138275822 138276034 -104388319 - L1ME4a LINE L1 -2649 3497 3286 2183 110 0 3 chr1 138276034 138276335 -104388018 - AluSx SINE Alu -12 300 1 1234 299 75 77 chr1 138276335 138276728 -104387625 - L1ME4a LINE L1 -2860 3286 2890 423 155 0 0 chr1 138276732 138276803 -104387550 - Alu SINE Alu -4 308 238 603 102 0 0 chr1 138276806 138276894 -104387459 + (TCCC)n Simple_repeat Simple_repeat 4 91 0 2017 106 0 4 chr1 138276897 138277171 -104387182 - AluSx SINE Alu -39 273 1 580 240 26 47 chr1 138277742 138277934 -104386419 + MER5A DNA MER1_type 1 188 -1 1012 302 76 37 chr1 138277936 138278396 -104385957 + L3 LINE CR1 1098 1575 -2 1641 170 31 28 chr1 138278526 138278837 -104385516 + AluJo SINE Alu 1 312 0 2230 119 0 0 chr1 138278901 138279196 -104385157 - AluSx SINE Alu -7 305 11 954 152 0 13 chr1 138279223 138279413 -104384940 + AluSg/x SINE Alu 136 323 0 2142 137 0 7 chr1 138279796 138280096 -104384257 - AluSx SINE Alu -14 298 1 433 139 14 0 chr1 138280107 138280179 -104384174 - tRNA-Ala-GCG tRNA tRNA -2 73 1 965 299 129 33 chr1 138280924 138281147 -104383206 + L2 LINE L2 2493 2693 -620 2239 92 0 16 chr1 138281147 138281450 -104382903 - AluSc SINE Alu -11 298 1 965 299 129 33 chr1 138281450 138281494 -104382859 + L2 LINE L2 2693 2731 -582 2173 123 0 0 chr1 138281494 138281786 -104382567 + AluSx SINE Alu 5 296 -16 965 299 129 33 chr1 138281786 138282273 -104382080 + L2 LINE L2 2731 3312 -1 2255 95 0 14 chr1 138282372 138282666 -104381687 + AluSc SINE Alu 1 290 -19 1197 143 174 42 chr1 138283134 138283393 -104380960 + AluJo SINE Alu 1 293 -9 2133 98 0 18 chr1 138283549 138283835 -104380518 - AluSx SINE Alu -27 285 5 189 414 35 9 chr1 138283845 138283961 -104380392 - MIR3 SINE MIR -86 122 4 249 309 114 24 chr1 138284199 138284322 -104380031 + MIR SINE MIR 1 134 -128 1295 140 251 0 chr1 138284333 138284576 -104379777 - AluJb SINE Alu -8 304 1 1348 190 77 11 chr1 138284632 138284906 -104379447 + AluJb SINE Alu 1 292 -20 24 53 0 0 chr1 138284984 138285022 -104379331 + AT_rich Low_complexity Low_complexity 1 38 0 201 286 155 0 chr1 138285025 138285109 -104379244 + MIR SINE MIR 136 232 -30 207 100 0 0 chr1 138285619 138285649 -104378704 + (A)n Simple_repeat Simple_repeat 1 30 0 2450 95 0 0 chr1 138285650 138285955 -104378398 + AluSq SINE Alu 1 305 -8 449 247 167 0 chr1 138286303 138286453 -104377900 + MIR SINE MIR 88 262 0 7202 140 21 33 chr1 138286680 138288088 -104376265 + L1PA14 LINE L1 3942 5336 -825 2262 111 3 9 chr1 138288088 138288403 -104375950 - AluSp SINE Alu 0 313 1 7202 140 21 33 chr1 138288403 138288551 -104375802 + L1PA14 LINE L1 5336 5484 -677 2239 123 0 0 chr1 138289233 138289541 -104374812 + AluSq SINE Alu 1 308 -5 2474 66 0 3 chr1 138289748 138290051 -104374302 - AluY SINE Alu -9 302 1 4902 78 20 0 chr1 138290102 138290766 -104373587 + L1PA14 LINE L1 5484 6160 -1 735 210 116 0 chr1 138291221 138291402 -104372951 - MIR SINE MIR -58 204 3 2241 167 55 20 chr1 138291432 138291940 -104372413 + L1MC4a LINE L1 6958 7483 -325 801 147 49 0 chr1 138291941 138292104 -104372249 + L1MD3 LINE L1 7815 7985 -10 273 172 11 33 chr1 138292878 138292939 -104371414 + MER5A DNA MER1_type 4 65 -124 1488 153 4 35 chr1 138292950 138293211 -104371142 + AluJb SINE Alu 14 266 -46 182 36 0 36 chr1 138293255 138293283 -104371070 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 70 0 0 chr1 138293606 138293649 -104370704 + AT_rich Low_complexity Low_complexity 1 43 0 2161 103 0 38 chr1 138293758 138294077 -104370276 - AluSg SINE Alu -3 307 1 2290 85 3 3 chr1 138294087 138294380 -104369973 - AluSp SINE Alu -10 303 11 338 106 0 0 chr1 138294463 138294510 -104369843 + MER66A LTR ERV1 287 333 -145 27 0 0 0 chr1 138294526 138294553 -104369800 + AT_rich Low_complexity Low_complexity 1 27 0 1910 128 62 19 chr1 138294928 138295296 -104369057 + MLT1B LTR MaLR 1 384 -6 955 214 133 19 chr1 138295642 138295913 -104368440 - AluJo SINE Alu 0 302 1 535 293 21 37 chr1 138295976 138296278 -104368075 - L1ME3A LINE L1 -223 5947 5643 1592 222 49 23 chr1 138296427 138296859 -104367494 + LTR47B LTR ERVL 1 443 0 741 233 103 33 chr1 138296906 138297206 -104367147 - L1ME3A LINE L1 -519 5645 5325 2287 90 3 7 chr1 138297425 138297726 -104366627 - AluSq SINE Alu -1 312 13 1535 183 16 45 chr1 138297962 138298274 -104366079 - AluJo SINE Alu -9 303 1 2503 78 0 3 chr1 138298285 138298593 -104365760 - AluSq SINE Alu -6 307 1 1133 207 61 4 chr1 138298737 138298983 -104365370 - MIR SINE MIR 0 262 3 25 51 0 0 chr1 138299051 138299090 -104365263 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr1 138299523 138299545 -104364808 + AT_rich Low_complexity Low_complexity 1 22 0 1074 116 13 13 chr1 138299547 138299702 -104364651 + AluSq SINE Alu 1 155 -158 519 315 58 94 chr1 138299857 138300482 -104363871 - L2 LINE L2 -1419 1895 1294 259 279 13 13 chr1 138300854 138300933 -104363420 + MIR SINE MIR 68 146 -116 1194 104 20 30 chr1 138301584 138301785 -104362568 + L1MB3 LINE L1 5741 5939 -244 1198 98 0 0 chr1 138301786 138301939 -104362414 + AluSp SINE Alu 136 288 -25 1230 160 4 48 chr1 138301944 138302212 -104362141 + L1MB3 LINE L1 5928 6183 0 2075 138 0 3 chr1 138303021 138303318 -104361035 - AluSx SINE Alu -16 296 1 186 333 93 28 chr1 138303343 138303451 -104360902 + L2 LINE L2 3116 3230 -42 255 203 0 0 chr1 138303480 138303539 -104360814 + (CAATA)n Simple_repeat Simple_repeat 3 61 0 22 35 0 0 chr1 138303675 138303704 -104360649 + AT_rich Low_complexity Low_complexity 1 29 0 367 314 81 58 chr1 138303704 138304086 -104360267 - MLT1K LTR MaLR -16 572 182 945 222 17 17 chr1 138304279 138304518 -104359835 + MLT1J LTR MaLR 13 251 -260 351 0 0 0 chr1 138305150 138305189 -104359164 + (TG)n Simple_repeat Simple_repeat 2 40 0 2231 99 24 0 chr1 138305189 138305482 -104358871 - AluSp SINE Alu -13 300 1 2432 96 0 0 chr1 138305544 138305856 -104358497 - AluSx SINE Alu 0 312 1 4193 155 27 11 chr1 138306697 138307510 -104356843 - L1MA7 LINE L1 -5 6286 5461 253 262 16 0 chr1 138308008 138308069 -104356284 - MER5A DNA MER1_type -118 71 10 2454 87 7 0 chr1 138308195 138308504 -104355849 - AluSx SINE Alu -1 311 1 424 195 13 0 chr1 138309985 138310062 -104354291 - Zaphod DNA AcHobo -1 4030 3953 2341 105 0 3 chr1 138310062 138310366 -104353987 - AluSx SINE Alu -9 303 1 1690 184 32 0 chr1 138310482 138310765 -104353588 - AluJo SINE Alu -20 292 1 24 32 0 0 chr1 138310896 138310927 -104353426 + AT_rich Low_complexity Low_complexity 1 31 0 2037 133 3 32 chr1 138311111 138311419 -104352934 - AluSx SINE Alu -13 299 1 1884 152 3 3 chr1 138311544 138311834 -104352519 - AluJb SINE Alu -22 290 1 2265 99 0 7 chr1 138311843 138312171 -104352182 - AluSq SINE Alu 0 313 1 2153 106 0 3 chr1 138312178 138312490 -104351863 - AluSc SINE Alu 0 311 1 21 0 0 0 chr1 138312771 138312792 -104351561 + AT_rich Low_complexity Low_complexity 1 21 0 831 223 152 10 chr1 138312825 138313060 -104351293 + MIR SINE MIR 9 262 0 636 357 18 3 chr1 138313292 138313628 -104350725 + L1MEd LINE L1 4 344 -5775 1260 259 84 43 chr1 138313677 138314334 -104350019 + L1MEd LINE L1 524 1207 -4912 1760 160 19 49 chr1 138314492 138314799 -104349554 - AluJb SINE Alu -14 298 1 588 196 0 9 chr1 138314812 138314924 -104349429 - FLAM_C SINE Alu -2 141 31 2022 108 22 4 chr1 138314931 138315209 -104349144 - AluSx SINE Alu -14 298 16 2358 106 3 0 chr1 138315490 138315801 -104348552 - AluSx SINE Alu 0 312 1 536 253 36 72 chr1 138315829 138316050 -104348303 + L1ME3A LINE L1 5931 6143 -27 1363 237 22 28 chr1 138316095 138316450 -104347903 + MER21B LTR ERV1 19 371 -492 1801 132 0 52 chr1 138316552 138316839 -104347514 - AluSx SINE Alu -40 272 1 370 203 114 0 chr1 138316934 138317057 -104347296 - L1ME4a LINE L1 -261 5860 5724 293 180 10 40 chr1 138317085 138317121 -104347232 + (TTTA)n Simple_repeat Simple_repeat 4 40 -60 929 125 6 0 chr1 138317121 138317281 -104347072 - L1MA5 LINE L1 -4 6296 6136 293 180 10 40 chr1 138317281 138317344 -104347009 + (TTTA)n Simple_repeat Simple_repeat 40 100 0 914 28 0 0 chr1 138317345 138317452 -104346901 - L1PA5 LINE L1 -8 6146 6040 1366 35 0 0 chr1 138317452 138317622 -104346731 + L1PA5 LINE L1 5815 5984 -170 327 252 80 60 chr1 138317743 138317894 -104346459 + MIR SINE MIR 59 212 -50 2083 138 0 0 chr1 138317927 138318232 -104346121 - AluSx SINE Alu -7 305 1 2171 117 0 7 chr1 138318612 138318912 -104345441 + AluSg SINE Alu 1 298 -12 1377 248 122 38 chr1 138319494 138320119 -104344234 + MER77 LTR ERV1 54 705 -4 221 253 89 89 chr1 138320133 138320206 -104344147 + MIR SINE MIR 39 111 -151 2408 85 0 10 chr1 138320206 138320513 -104343840 - AluSx SINE Alu -8 304 1 221 253 89 89 chr1 138320513 138320597 -104343756 + MIR SINE MIR 110 196 -66 500 270 0 0 chr1 138320993 138321108 -104343245 - L2 LINE L2 -285 2987 2873 1807 166 0 3 chr1 138321155 138321438 -104342915 - AluJb SINE Alu -5 307 26 1981 136 14 0 chr1 138321711 138322006 -104342347 + AluSx SINE Alu 1 299 -13 507 241 66 30 chr1 138322674 138322840 -104341513 - MIR SINE MIR 0 262 91 215 81 54 0 chr1 138322866 138322903 -104341450 + CT-rich Low_complexity Low_complexity 3 41 0 1712 194 26 0 chr1 138322906 138323210 -104341143 - AluJo SINE Alu 0 312 1 1643 162 46 11 chr1 138323632 138323916 -104340437 - AluJb SINE Alu -18 294 1 298 0 0 0 chr1 138324399 138324442 -104339911 - AluY SINE Alu 0 301 259 2637 33 0 3 chr1 138328059 138328361 -104335992 - AluY SINE Alu -10 301 1 524 333 41 22 chr1 138328426 138328696 -104335657 + L2 LINE L2 2692 2966 -348 383 233 126 10 chr1 138328834 138328937 -104335416 + L2 LINE L2 3198 3312 -1 2289 67 0 67 chr1 138329116 138329445 -104334908 + AluSc SINE Alu 1 307 -2 21 36 0 0 chr1 138329589 138329617 -104334736 + AT_rich Low_complexity Low_complexity 1 28 0 2230 125 0 3 chr1 138330112 138330415 -104333938 + AluSx SINE Alu 1 302 -10 26 50 0 0 chr1 138330547 138330587 -104333766 + AT_rich Low_complexity Low_complexity 1 40 0 2378 75 20 0 chr1 138330991 138331285 -104333068 + AluSx SINE Alu 2 301 -11 1985 148 37 27 chr1 138332206 138332610 -104331743 - L1MD1 LINE L1 0 6242 5835 2127 117 0 26 chr1 138332623 138332931 -104331422 - AluSx SINE Alu -7 305 6 1443 100 13 17 chr1 138333007 138333237 -104331116 - L1MD1 LINE L1 -411 5831 5603 450 102 0 0 chr1 138333237 138333296 -104331057 - Alu SINE Alu -245 64 6 783 219 26 34 chr1 138333297 138333566 -104330787 - L1MC5 LINE L1 -51 7910 7644 747 130 9 0 chr1 138333566 138333681 -104330672 - AluSg/x SINE Alu -2 307 192 1748 188 73 87 chr1 138333704 138334387 -104329966 - L1MC5 LINE L1 -314 7647 6956 2254 71 0 14 chr1 138334387 138334670 -104329683 - AluY SINE Alu -32 279 1 1748 188 73 87 chr1 138334670 138334682 -104329671 - L1MC5 LINE L1 -1005 6956 6945 207 0 0 0 chr1 138334682 138334705 -104329648 + (TA)n Simple_repeat Simple_repeat 1 23 0 1748 188 73 87 chr1 138334705 138334735 -104329618 - L1MC5 LINE L1 -1016 6945 6931 262 339 77 36 chr1 138336595 138336931 -104327422 + L2 LINE L2 2468 2817 -497 2152 102 0 7 chr1 138337098 138337382 -104326971 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr1 138337385 138337408 -104326945 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2345 96 0 7 chr1 138337448 138337751 -104326602 + AluSq SINE Alu 1 301 -12 1803 121 35 38 chr1 138338046 138338335 -104326018 - AluSx SINE Alu -24 288 1 358 359 53 23 chr1 138338566 138338697 -104325656 - L2 LINE L2 -4 3268 3134 2273 105 7 0 chr1 138338773 138339068 -104325285 - AluSp SINE Alu -16 297 1 2393 65 3 26 chr1 138340850 138341156 -104323197 + AluSq SINE Alu 2 300 -13 263 218 154 26 chr1 138341519 138341597 -104322756 - L2 LINE L2 -19 3294 3207 500 286 55 11 chr1 138341728 138341924 -104322429 + MIR SINE MIR 3 204 -58 261 120 27 13 chr1 138342282 138342357 -104321996 + (TA)n Simple_repeat Simple_repeat 2 77 0 285 316 155 6 chr1 138342358 138342526 -104321827 - L2 LINE L2 -412 2902 2710 194 280 11 32 chr1 138342521 138342614 -104321739 - L2 LINE L2 -92 3221 3131 * 319 300 247 0 chr1 138343335 138343525 -104320828 + MIR SINE MIR 20 256 -6 573 277 47 0 chr1 138344848 138344996 -104319357 + MIR SINE MIR 103 257 -5 207 0 0 0 chr1 138345866 138345889 -104318464 + (CTTTG)n Simple_repeat Simple_repeat 2 24 0 5094 130 19 19 chr1 138346563 138347061 -104317292 - L1MA6 LINE L1 -5 6295 5798 273 29 0 0 chr1 138347061 138347095 -104317258 + (TA)n Simple_repeat Simple_repeat 2 35 0 1943 162 3 10 chr1 138347101 138347415 -104316938 - AluJb SINE Alu 0 312 1 5094 130 19 19 chr1 138347415 138347718 -104316635 - L1MA6 LINE L1 -506 5794 5487 2097 113 7 23 chr1 138347988 138348298 -104316055 - AluSx SINE Alu -7 305 1 240 265 60 48 chr1 138348873 138348956 -104315397 + L2 LINE L2 2977 3060 -212 276 263 127 51 chr1 138349803 138349921 -104314432 + L2 LINE L2 3145 3271 -1 2538 48 0 19 chr1 138351470 138351783 -104312570 - AluY SINE Alu -3 308 2 21 0 0 0 chr1 138352015 138352036 -104312317 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 138352894 138352917 -104311436 + AT_rich Low_complexity Low_complexity 1 23 0 1039 277 116 30 chr1 138353678 138353972 -104310381 - L2 LINE L2 -5 3308 3041 2076 118 3 7 chr1 138353972 138354268 -104310085 + AluSx SINE Alu 1 295 -17 1039 277 116 30 chr1 138354268 138354826 -104309527 - L2 LINE L2 -272 3041 2288 805 333 97 15 chr1 138354875 138355424 -104308929 - L2 LINE L2 -2276 1038 445 499 287 73 6 chr1 138355461 138355625 -104308728 + L1MC/D LINE L1 5609 5783 -2025 1388 87 11 0 chr1 138355725 138355910 -104308443 - AluSg/x SINE Alu -5 307 121 245 294 22 0 chr1 138356765 138356857 -104307496 + (TA)n Simple_repeat Simple_repeat 1 94 0 1463 211 14 0 chr1 138356882 138357167 -104307186 - AluJo SINE Alu -23 289 1 223 317 0 37 chr1 138357305 138357387 -104306966 + L2 LINE L2 3186 3264 -8 1815 116 13 63 chr1 138358237 138358540 -104305813 + AluSg SINE Alu 5 292 -18 6815 120 70 24 chr1 138358543 138358599 -104305754 + L1PA14 LINE L1 3956 4008 -2153 2097 99 0 0 chr1 138358599 138358872 -104305481 + AluY SINE Alu 29 301 -10 6815 120 70 24 chr1 138358872 138360047 -104304306 + L1PA14 LINE L1 4008 5128 -1033 1717 105 27 19 chr1 138360047 138360305 -104304048 + AluSq SINE Alu 40 299 -14 6815 120 70 24 chr1 138360305 138360476 -104303877 + L1PA14 LINE L1 5128 5290 -871 2353 85 0 3 chr1 138360476 138360771 -104303582 + AluSg SINE Alu 1 294 -16 6815 120 70 24 chr1 138360771 138360978 -104303375 + L1PA14 LINE L1 5290 5486 -675 2362 81 7 10 chr1 138360978 138361285 -104303068 + AluSx SINE Alu 1 306 -6 2058 139 10 0 chr1 138361294 138361589 -104302764 + AluSp SINE Alu 1 298 -15 6815 120 70 24 chr1 138361589 138362063 -104302290 + L1PA14 LINE L1 5493 6161 0 27 49 0 0 chr1 138362082 138362123 -104302230 + AT_rich Low_complexity Low_complexity 1 41 0 2225 159 49 10 chr1 138363179 138363587 -104300766 - L1PA16 LINE L1 -131 6035 5612 1336 163 24 94 chr1 138363592 138363923 -104300430 - AluJb SINE Alu -4 308 1 1034 116 0 0 chr1 138363999 138364154 -104300199 - L1PA16 LINE L1 -531 5625 5471 6431 190 50 1 chr1 138364156 138365573 -104298780 + L1PA16 LINE L1 3990 5464 -702 542 336 163 34 chr1 138365630 138366637 -104297716 + L2 LINE L2 1569 2705 -609 2222 98 0 14 chr1 138366646 138366941 -104297412 + AluSx SINE Alu 1 291 -21 1077 244 82 4 chr1 138367058 138367337 -104297016 - L2 LINE L2 -837 2477 2177 744 241 35 0 chr1 138367337 138367511 -104296842 + MER3 DNA MER1_type 30 209 0 772 260 64 0 chr1 138367515 138367734 -104296619 - L2 LINE L2 -1135 2179 1947 1394 152 45 20 chr1 138367735 138367979 -104296374 - MER1B DNA MER1_type -88 251 2 1863 136 36 13 chr1 138368051 138368352 -104296001 - AluSq SINE Alu -1 312 5 270 218 225 28 chr1 138370745 138370887 -104293466 - L1ME4a LINE L1 0 6121 5952 311 235 37 0 chr1 138371014 138371095 -104293258 + MIR SINE MIR 33 116 -146 253 273 48 31 chr1 138371107 138371412 -104292941 - L1M4 LINE L1 -767 5379 5067 1517 198 72 24 chr1 138371625 138371959 -104292394 - MER21B LTR ERV1 -111 752 403 2610 201 96 188 chr1 138372284 138372464 -104291889 + L2 LINE L2 1489 1684 -1629 2223 116 3 3 chr1 138372464 138372767 -104291586 + AluSx SINE Alu 2 304 -8 2610 201 96 188 chr1 138372767 138373112 -104291241 + L2 LINE L2 1684 2059 -1254 232 139 0 0 chr1 138373112 138373148 -104291205 - Alu SINE Alu -16 117 82 2610 201 96 188 chr1 138373148 138373341 -104291012 + L2 LINE L2 2059 2268 -1045 878 200 40 40 chr1 138373341 138373541 -104290812 - MER20 DNA MER1_type -19 200 1 2610 201 96 188 chr1 138373541 138374293 -104290060 + L2 LINE L2 2268 3053 -260 1668 138 13 70 chr1 138374389 138374687 -104289666 - AluJo SINE Alu -21 291 11 2113 117 0 32 chr1 138374706 138375036 -104289317 - AluSx SINE Alu 0 312 1 345 264 28 0 chr1 138375143 138375215 -104289138 + MIR SINE MIR 2 75 -187 504 0 0 0 chr1 138375218 138375274 -104289079 + (TG)n Simple_repeat Simple_repeat 2 57 0 669 232 0 21 chr1 138375375 138375517 -104288836 + L2 LINE L2 3171 3309 -4 192 347 88 74 chr1 138375606 138375891 -104288462 - L2 LINE L2 -94 3178 2890 21 36 0 0 chr1 138376311 138376339 -104288014 + AT_rich Low_complexity Low_complexity 1 28 0 234 91 0 0 chr1 138376703 138376736 -104287617 + (AATTG)n Simple_repeat Simple_repeat 1 33 0 1748 127 52 4 chr1 138377502 138377797 -104286556 - AluJb SINE Alu 0 308 1 285 325 125 84 chr1 138377853 138378067 -104286286 - L2 LINE L2 0 3272 3068 186 71 0 0 chr1 138378067 138378095 -104286258 + (TATG)n Simple_repeat Simple_repeat 1 28 0 285 325 125 84 chr1 138378095 138378154 -104286199 - L2 LINE L2 -204 3068 3013 2190 113 7 0 chr1 138378154 138378447 -104285906 + AluSx SINE Alu 2 296 -16 285 325 125 84 chr1 138378447 138378563 -104285790 - L2 LINE L2 -259 3013 2866 726 281 73 20 chr1 138378599 138378845 -104285508 + MIR SINE MIR 2 260 -2 945 125 0 0 chr1 138378962 138379090 -104285263 - FLAM_C SINE Alu -2 131 4 387 0 0 0 chr1 138380436 138380479 -104283874 + (TG)n Simple_repeat Simple_repeat 2 44 0 588 249 146 24 chr1 138380502 138380707 -104283646 + MIR SINE MIR 31 260 -2 1058 76 8 0 chr1 138380905 138381036 -104283317 - AluSg1 SINE Alu -177 132 1 186 43 0 0 chr1 138381080 138381103 -104283250 + (T)n Simple_repeat Simple_repeat 1 23 0 2178 97 7 14 chr1 138382419 138382708 -104281645 - AluSx SINE Alu -25 287 1 410 263 45 11 chr1 138383056 138383239 -104281114 + MIR SINE MIR 31 216 -46 196 229 0 0 chr1 138383512 138383547 -104280806 - L2 LINE L2 -21 3251 3217 207 376 51 8 chr1 138383659 138383776 -104280577 - MIR3 SINE MIR -52 156 35 220 268 49 49 chr1 138384121 138384203 -104280150 + MIR SINE MIR 95 176 -86 27 49 0 0 chr1 138384501 138384542 -104279811 + GC_rich Low_complexity Low_complexity 1 41 0 34 84 0 0 chr1 138384781 138384864 -104279489 + GC_rich Low_complexity Low_complexity 1 83 0 35 71 0 0 chr1 138385040 138385110 -104279243 + GC_rich Low_complexity Low_complexity 1 70 0 672 160 0 0 chr1 138385211 138385305 -104279048 - AluSg SINE Alu -215 95 2 345 260 0 0 chr1 138385413 138385486 -104278867 + L1ME LINE L1 5518 5590 -531 2368 78 3 10 chr1 138385526 138385832 -104278521 - AluY SINE Alu -7 304 1 634 204 10 4 chr1 138385847 138385994 -104278359 + L1ME1 LINE L1 6036 6166 0 914 190 6 6 chr1 138386015 138386178 -104278175 + AluJo SINE Alu 11 173 -139 604 215 86 18 chr1 138386196 138386359 -104277994 + MER113 DNA MER1_type? 348 521 0 912 122 61 6 chr1 138386401 138386581 -104277772 + Charlie5 DNA MER1_type 2389 2578 -34 577 243 39 87 chr1 138386593 138386643 -104277710 - MIR SINE MIR -54 208 157 1471 169 109 0 chr1 138386643 138386910 -104277443 - AluJo SINE Alu -16 296 1 577 243 39 87 chr1 138386910 138387065 -104277288 - MIR SINE MIR -105 157 13 2011 141 3 7 chr1 138387342 138387648 -104276705 + AluJb SINE Alu 1 305 -7 2293 91 0 16 chr1 138388063 138388370 -104275983 - AluY SINE Alu -8 303 2 275 392 108 0 chr1 138388463 138388593 -104275760 - L2 LINE L2 -13 3259 3116 23 0 0 0 chr1 138388679 138388702 -104275651 + AT_rich Low_complexity Low_complexity 1 23 0 2062 98 24 14 chr1 138388892 138389201 -104275152 - AluSx SINE Alu 0 312 1 1601 157 91 7 chr1 138389203 138389358 -104274995 - AluJo SINE Alu -14 298 157 242 54 0 27 chr1 138389358 138389395 -104274958 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 1601 157 91 7 chr1 138389395 138389513 -104274840 - AluJo SINE Alu -155 157 2 1841 149 47 10 chr1 138389548 138389844 -104274509 - AluJb SINE Alu -5 307 1 356 284 23 0 chr1 138389977 138390065 -104274288 - L2 LINE L2 -1 3312 3223 672 311 41 14 chr1 138390174 138390393 -104273960 - MIR SINE MIR -17 245 21 2211 115 3 10 chr1 138390579 138390892 -104273461 + AluSq SINE Alu 1 311 -2 1605 176 0 53 chr1 138390905 138391224 -104273129 + AluJo SINE Alu 1 302 -10 256 131 82 33 chr1 138391486 138391547 -104272806 + MLT1L LTR MaLR 535 598 -17 1030 256 29 8 chr1 138392049 138392295 -104272058 + MIR SINE MIR 2 252 -10 2341 83 0 13 chr1 138392626 138392926 -104271427 + AluSx SINE Alu 1 296 -16 201 74 0 0 chr1 138393340 138393367 -104270986 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 479 233 69 0 chr1 138393591 138393707 -104270646 - MER103 DNA DNA -1 165 42 27 49 0 0 chr1 138393711 138393752 -104270601 + AT_rich Low_complexity Low_complexity 1 41 0 595 229 167 6 chr1 138393976 138394193 -104270160 - L1ME3A LINE L1 -205 5957 5717 254 279 144 9 chr1 138394286 138394397 -104269956 - L2 LINE L2 -17 3296 3171 22 0 0 0 chr1 138394581 138394603 -104269750 + AT_rich Low_complexity Low_complexity 1 22 0 2160 127 0 9 chr1 138394608 138394924 -104269429 - AluSq SINE Alu 0 313 1 1989 121 11 0 chr1 138395032 138395297 -104269056 - AluSx SINE Alu -44 268 1 399 242 17 17 chr1 138395493 138395613 -104268740 - L2 LINE L2 -733 2581 2462 536 296 83 36 chr1 138395626 138396012 -104268341 - LTR16B LTR ERVL -14 436 1 3210 282 46 27 chr1 138396499 138397757 -104266596 - HERV16 LTR ERVL -1954 3042 1711 1118 145 0 11 chr1 138397797 138397976 -104266377 + AluJb SINE Alu 121 297 -15 3732 134 62 5 chr1 138397978 138398604 -104265749 - L1MB2 LINE L1 -21 6150 5489 1185 158 47 72 chr1 138398739 138398893 -104265460 - AluJo SINE Alu -28 284 139 2392 43 3 13 chr1 138398893 138399192 -104265161 - AluY SINE Alu -15 296 1 1185 158 47 72 chr1 138399192 138399316 -104265037 - AluJo SINE Alu -173 139 13 2301 273 91 65 chr1 138399323 138399880 -104264473 - HERV16 LTR ERVL -3501 1495 954 2093 88 3 0 chr1 138399880 138400194 -104264159 + AluSx SINE Alu 1 315 0 2301 273 91 65 chr1 138400194 138400839 -104263514 - HERV16 LTR ERVL -4042 954 261 270 316 20 10 chr1 138400928 138401026 -104263327 - HERV16 LTR ERVL -4746 250 152 268 345 62 27 chr1 138401053 138401311 -104263042 - MLT1H-int LTR MaLR -793 578 312 604 226 95 56 chr1 138401438 138401863 -104262490 - MLT1H LTR MaLR 0 595 51 431 238 63 32 chr1 138401910 138402036 -104262317 - L2 LINE L2 -970 2344 2215 224 209 0 0 chr1 138403149 138403192 -104261161 + (TG)n Simple_repeat Simple_repeat 2 44 0 391 324 22 30 chr1 138404525 138404675 -104259678 - MIR SINE MIR -46 162 14 2299 86 0 3 chr1 138406102 138406404 -104257949 - AluSq SINE Alu -11 302 2 1931 105 3 17 chr1 138407894 138408188 -104256165 - AluSx SINE Alu -21 291 2 203 302 87 24 chr1 138408271 138408397 -104255956 + L2 LINE L2 3154 3287 -26 376 297 181 13 chr1 138408521 138408676 -104255677 - MIR SINE MIR -61 201 21 230 356 112 54 chr1 138411248 138411453 -104252900 - L3b LINE CR1 -61 1522 1306 1838 153 0 3 chr1 138413109 138413409 -104250944 + AluJb SINE Alu 1 299 -13 243 0 0 0 chr1 138413885 138413912 -104250441 + (T)n Simple_repeat Simple_repeat 1 27 0 1609 150 4 4 chr1 138413997 138414270 -104250083 + AluJb SINE Alu 1 273 -39 26 0 0 0 chr1 138415795 138415821 -104248532 + GC_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 138416065 138416088 -104248265 + GC_rich Low_complexity Low_complexity 1 23 0 43 56 0 0 chr1 138416151 138416222 -104248131 + GC_rich Low_complexity Low_complexity 1 71 0 230 356 112 54 chr1 138417161 138417366 -104246987 + L3b LINE CR1 1306 1522 -61 221 335 11 64 chr1 138418067 138418255 -104246098 + CT-rich Low_complexity Low_complexity 1 178 0 1750 130 40 0 chr1 138418691 138418967 -104245386 + AluSq SINE Alu 11 297 -16 1402 156 45 20 chr1 138419057 138419301 -104245052 + MER1B DNA MER1_type 2 251 -88 777 260 64 0 chr1 138419302 138419521 -104244832 + L2 LINE L2 1947 2179 -1135 723 241 35 0 chr1 138419525 138419699 -104244654 - MER3 DNA MER1_type 0 209 30 1100 247 82 4 chr1 138419699 138419978 -104244375 + L2 LINE L2 2177 2477 -837 2114 98 0 14 chr1 138420095 138420390 -104243963 - AluSx SINE Alu -21 291 1 599 330 165 36 chr1 138420399 138421406 -104242947 - L2 LINE L2 -609 2705 1569 6309 190 50 1 chr1 138421463 138422880 -104241473 - L1P4 LINE L1 -702 5464 3990 1018 116 0 0 chr1 138422882 138423037 -104241316 + L1P5 LINE L1 5471 5625 -531 2205 168 50 17 chr1 138423089 138423113 -104241240 + L1PA16 LINE L1 5588 5610 -556 1247 165 24 93 chr1 138423113 138423447 -104240906 + AluJb SINE Alu 1 311 -1 2205 168 50 17 chr1 138423447 138423910 -104240443 + L1PA16 LINE L1 5610 6035 -131 27 49 0 0 chr1 138424913 138424954 -104239399 + AT_rich Low_complexity Low_complexity 1 41 0 3234 101 23 6 chr1 138424973 138425447 -104238906 - L1PA14 LINE L1 0 6161 5680 1935 142 10 0 chr1 138425447 138425742 -104238611 - AluSp SINE Alu -15 298 1 2233 82 7 10 chr1 138425751 138426054 -104238299 - AluSx SINE Alu -6 306 5 249 309 114 24 chr1 138426418 138426541 -104237812 + MIR SINE MIR 1 134 -128 198 0 0 0 chr1 138426552 138426574 -104237779 + (T)n Simple_repeat Simple_repeat 1 22 0 1184 158 74 0 chr1 138426580 138426795 -104237558 - AluJb SINE Alu -81 231 1 1245 193 77 11 chr1 138426851 138427125 -104237228 + AluJb SINE Alu 1 292 -20 24 53 0 0 chr1 138427203 138427241 -104237112 + AT_rich Low_complexity Low_complexity 1 38 0 208 286 155 0 chr1 138427244 138427328 -104237025 + MIR SINE MIR 136 232 -30 995 91 0 0 chr1 138427879 138428011 -104236342 - AluSg SINE Alu -178 132 1 431 218 106 117 chr1 138428486 138428543 -104235810 + L1ME4a LINE L1 5716 5772 -349 1756 153 0 3 chr1 138428543 138428830 -104235523 + AluJb SINE Alu 14 299 -13 431 218 106 117 chr1 138428830 138428900 -104235453 + L1ME4a LINE L1 5772 5841 -280 1387 176 65 0 chr1 138428900 138429161 -104235192 + AluJo SINE Alu 5 282 -30 431 218 106 117 chr1 138429161 138429356 -104234997 + L1ME4a LINE L1 5841 6025 -96 226 289 102 99 chr1 138429797 138429913 -104234440 + L2 LINE L2 2584 2698 -616 2067 98 0 60 chr1 138429913 138430229 -104234124 + AluSq SINE Alu 1 297 -16 226 289 102 99 chr1 138430229 138430485 -104233868 + L2 LINE L2 2698 2957 -357 1437 138 12 24 chr1 138430577 138430831 -104233522 - AluSx SINE Alu -16 296 46 447 148 0 0 chr1 138430936 138431017 -104233336 + AluS SINE Alu 229 309 -3 25 0 0 0 chr1 138431036 138431061 -104233292 + AT_rich Low_complexity Low_complexity 1 25 0 1972 119 7 3 chr1 138431230 138431523 -104232830 - AluSx SINE Alu -18 294 1 313 268 89 16 chr1 138431562 138431685 -104232668 - L1ME3A LINE L1 -214 5956 5825 1862 161 0 3 chr1 138431782 138432087 -104232266 - AluSx SINE Alu -8 304 1 1177 223 107 3 chr1 138432105 138432414 -104231939 + MER58B DNA MER1_type 1 341 0 681 209 23 0 chr1 138432551 138432680 -104231673 - FLAM_A SINE Alu -1 132 1 2059 103 0 7 chr1 138432906 138433196 -104231157 - AluSq SINE Alu -17 296 9 375 233 147 35 chr1 138433289 138433405 -104230948 + L2 LINE L2 3185 3313 0 296 55 91 0 chr1 138433632 138433687 -104230666 - Alu SINE Alu -232 69 10 1047 110 138 4 chr1 138433783 138434037 -104230316 + AluSc SINE Alu 6 293 -16 2173 106 3 0 chr1 138434769 138435070 -104229283 + AluSx SINE Alu 1 302 -10 2202 58 0 61 chr1 138435747 138436058 -104228295 + AluY SINE Alu 1 292 -19 2420 162 84 21 chr1 138436147 138436622 -104227731 - MLT1D LTR MaLR 0 505 1 1631 149 12 61 chr1 138437043 138437371 -104226982 + AluJb SINE Alu 1 312 0 3370 52 55 0 chr1 138437464 138437885 -104226468 - MLT2A1 LTR ERVL 0 444 1 2005 115 0 7 chr1 138438038 138438333 -104226020 + AluSx SINE Alu 1 293 -19 1509 134 0 4 chr1 138438382 138438613 -104225740 - AluSx SINE Alu -82 230 1 2227 82 0 3 chr1 138438768 138439060 -104225293 + AluSc SINE Alu 1 291 -18 1696 141 50 7 chr1 138439279 138439562 -104224791 - AluSg SINE Alu -15 295 1 965 178 52 24 chr1 138439915 138440128 -104224225 + MER20 DNA MER1_type 1 219 0 365 151 302 0 chr1 138440392 138440478 -104223875 + FLAM_A SINE Alu 5 116 -17 1894 124 6 29 chr1 138440810 138441124 -104223229 - AluSx SINE Alu -5 307 1 2157 89 3 0 chr1 138441264 138441579 -104222774 + AluY SINE Alu 1 311 0 337 114 0 0 chr1 138441717 138441761 -104222592 + Alu SINE Alu 1 44 -264 452 17 0 17 chr1 138441864 138441922 -104222431 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 1512 142 58 15 chr1 138442108 138442432 -104221921 + AluJb SINE Alu 1 336 0 2331 61 3 0 chr1 138442432 138442761 -104221592 + AluY SINE Alu 1 330 0 1509 190 13 17 chr1 138442766 138443066 -104221287 + AluJo SINE Alu 1 299 -13 24 0 0 0 chr1 138443066 138443090 -104221263 + AT_rich Low_complexity Low_complexity 1 24 0 208 246 0 0 chr1 138443478 138443535 -104220818 + CT-rich Low_complexity Low_complexity 2 58 0 2138 105 0 0 chr1 138443691 138443995 -104220358 + AluSq SINE Alu 1 304 -9 1889 108 3 33 chr1 138444235 138444541 -104219812 + AluSx SINE Alu 1 297 -15 2312 94 3 3 chr1 138445525 138445822 -104218531 + AluSp SINE Alu 1 297 -16 2226 108 3 3 chr1 138445867 138446164 -104218189 + AluSc SINE Alu 1 297 -12 198 0 0 0 chr1 138448076 138448098 -104216255 + (A)n Simple_repeat Simple_repeat 1 22 0 1907 113 78 3 chr1 138448724 138449008 -104215345 + AluSq SINE Alu 1 305 -8 1917 144 7 3 chr1 138449029 138449314 -104215039 + AluSx SINE Alu 1 286 -26 340 114 0 43 chr1 138449314 138449384 -104214969 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 2031 115 14 24 chr1 138449583 138449879 -104214474 - AluSg SINE Alu -12 298 6 180 0 0 0 chr1 138450291 138450311 -104214042 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1397 145 131 69 chr1 138450531 138450821 -104213532 + AluJo SINE Alu 1 308 -4 204 250 23 0 chr1 138450825 138450869 -104213484 + L2 LINE L2 3212 3256 -16 287 116 23 0 chr1 138450877 138450920 -104213433 + HY4 scRNA scRNA 2 45 -48 2459 87 0 0 chr1 138450959 138451269 -104213084 - AluY SINE Alu 0 311 2 942 236 30 0 chr1 138451368 138451567 -104212786 - MER58A DNA MER1_type -19 205 1 267 323 21 13 chr1 138451570 138451673 -104212680 - MIR SINE MIR -102 106 6 2292 84 3 0 chr1 138451680 138451995 -104212358 - AluSq SINE Alu 0 316 1 2043 142 7 7 chr1 138451998 138452307 -104212046 - AluJb SINE Alu -3 309 1 213 233 0 0 chr1 138452398 138452441 -104211912 + L2 LINE L2 3220 3262 -10 219 88 0 0 chr1 138452555 138452589 -104211764 + (TG)n Simple_repeat Simple_repeat 1 34 0 2361 71 14 3 chr1 138454091 138454388 -104209965 + AluSq SINE Alu 1 300 -13 2334 80 3 7 chr1 138454471 138454770 -104209583 - AluY SINE Alu -13 298 1 658 157 17 0 chr1 138454808 138454923 -104209430 - AluJo SINE Alu -108 204 88 686 203 0 15 chr1 138455131 138455264 -104209089 + FLAM_C SINE Alu 3 133 0 2270 108 7 0 chr1 138455428 138455725 -104208628 - AluSc SINE Alu -10 299 1 838 186 0 39 chr1 138455910 138456066 -104208287 + FAM SINE Alu 18 167 -18 2463 66 0 0 chr1 138456487 138456788 -104207565 + AluY SINE Alu 1 301 -10 2051 129 25 0 chr1 138456868 138457154 -104207199 + AluSx SINE Alu 1 293 -19 2246 102 3 0 chr1 138457417 138457712 -104206641 - AluSp SINE Alu -17 296 1 1222 61 0 0 chr1 138458090 138458238 -104206115 - AluSg/x SINE Alu -21 289 142 272 79 0 0 chr1 138458238 138458276 -104206077 + AluSg/x SINE Alu 97 134 -166 396 0 0 0 chr1 138458469 138458513 -104205840 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 2074 109 24 7 chr1 138458514 138458808 -104205545 - 7SLRNA srpRNA srpRNA -21 299 1 2488 81 0 3 chr1 138458932 138459241 -104205112 + AluSg SINE Alu 1 308 -2 2205 130 0 0 chr1 138460432 138460739 -104203614 + AluSx SINE Alu 5 311 -1 1225 149 33 4 chr1 138460739 138460981 -104203372 - MER33 DNA MER1_type -24 300 52 772 144 0 0 chr1 138461029 138461147 -104203206 - FLAM_C SINE Alu 0 143 26 2137 110 40 0 chr1 138461479 138461779 -104202574 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 138461783 138461804 -104202549 + AT_rich Low_complexity Low_complexity 1 21 0 2146 117 0 29 chr1 138461833 138461868 -104202485 - AluSg SINE Alu -3 307 273 270 0 0 0 chr1 138461868 138461898 -104202455 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2146 117 0 29 chr1 138461898 138462178 -104202175 - AluSg SINE Alu -37 273 1 1794 84 4 0 chr1 138462180 138462405 -104201948 - AluSq SINE Alu -16 297 72 947 131 29 0 chr1 138462408 138462545 -104201808 + AluSg/x SINE Alu 154 294 -18 2965 161 46 6 chr1 138462545 138463067 -104201286 - MER89 LTR ERV1 -16 543 1 1954 131 0 56 chr1 138463225 138463545 -104200808 + AluSx SINE Alu 1 302 -10 1234 118 0 0 chr1 138463894 138464055 -104200298 - AluSg/x SINE Alu -19 293 133 21 36 0 0 chr1 138464104 138464132 -104200221 + AT_rich Low_complexity Low_complexity 1 28 0 305 141 84 14 chr1 138464169 138464240 -104200113 - MER39 LTR ERV1 -25 682 607 * 410 250 0 32 chr1 138464235 138464359 -104199994 - LTR7 LTR ERV1 -27 423 304 2300 66 13 26 chr1 138464482 138464784 -104199569 - AluY SINE Alu -13 298 1 2661 137 25 22 chr1 138464797 138465241 -104199112 - MER65A LTR ERV1 0 445 1 2215 97 16 7 chr1 138465258 138465566 -104198787 + AluSq SINE Alu 3 313 0 488 254 133 6 chr1 138465759 138465932 -104198421 + L1ME4a LINE L1 5634 5828 -293 2243 119 0 7 chr1 138465932 138466242 -104198111 + AluSx SINE Alu 1 308 -4 1875 143 24 0 chr1 138466261 138466555 -104197798 - AluSx SINE Alu -11 301 1 297 295 65 14 chr1 138466587 138466726 -104197627 - MIR3 SINE MIR -23 185 40 * 502 265 94 18 chr1 138466695 138466865 -104197488 + MIR SINE MIR 8 190 -72 1377 101 0 83 chr1 138466934 138467069 -104197284 + AluSq SINE Alu 1 113 -200 2400 83 0 6 chr1 138467069 138467381 -104196972 + AluY SINE Alu 2 311 0 1377 101 0 83 chr1 138467381 138467463 -104196890 + AluSq SINE Alu 113 200 -113 266 100 0 0 chr1 138467484 138467524 -104196829 - AluSq/x SINE Alu -167 136 97 1145 89 0 0 chr1 138467528 138467674 -104196679 + AluSc SINE Alu 147 292 -17 2172 64 30 0 chr1 138468013 138468279 -104196074 + AluY SINE Alu 1 274 -37 815 136 0 15 chr1 138468643 138468775 -104195578 + FLAM_C SINE Alu 1 130 -3 2584 60 0 0 chr1 138469841 138470141 -104194212 + AluSg SINE Alu 1 300 -10 2467 68 0 3 chr1 138470767 138471060 -104193293 + AluSq SINE Alu 3 294 -19 297 105 0 0 chr1 138471298 138471371 -104192982 - Alu SINE Alu 0 302 239 2521 138 76 9 chr1 138471706 138472140 -104192213 + Tigger1 DNA MER2_type 1955 2417 -1 253 286 0 0 chr1 138472140 138472195 -104192158 + MER21B LTR ERV1 17 71 -792 861 213 0 6 chr1 138472198 138472358 -104191995 + FRAM SINE Alu 4 162 -4 733 201 19 169 chr1 138472462 138472841 -104191512 + MER21B LTR ERV1 127 448 -415 2261 98 14 0 chr1 138472851 138473136 -104191217 - AluSc SINE Alu -18 291 3 2123 113 0 55 chr1 138473136 138473463 -104190890 - AluSq SINE Alu -4 309 1 943 159 49 6 chr1 138473463 138473626 -104190727 - AluJo SINE Alu -16 296 127 1600 179 3 45 chr1 138473644 138473952 -104190401 - AluJo SINE Alu -14 298 4 2406 79 0 3 chr1 138473964 138474268 -104190085 - AluY SINE Alu -8 303 1 364 235 161 27 chr1 138474334 138474483 -104189870 + MER21B LTR ERV1 509 677 -186 1616 182 59 78 chr1 138474489 138474912 -104189441 - MER49 LTR ERV1 -19 904 490 414 154 0 15 chr1 138474898 138474963 -104189390 - MER72 LTR ERV1 -658 64 1 * 270 203 141 0 chr1 138474963 138475018 -104189335 + MER21B LTR ERV1 691 754 -109 204 67 0 0 chr1 138475306 138475336 -104189017 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1829 161 7 0 chr1 138475336 138475621 -104188732 - AluSx SINE Alu -25 287 1 2382 78 0 3 chr1 138476284 138476578 -104187775 - AluSx SINE Alu -15 297 5 2563 40 3 3 chr1 138476714 138477011 -104187342 - AluY SINE Alu -14 297 1 1638 100 75 64 chr1 138477304 138477607 -104186746 - AluSx SINE Alu 0 306 1 2256 107 0 3 chr1 138477916 138478214 -104186139 - AluSp SINE Alu -16 297 1 1381 97 5 0 chr1 138478317 138478503 -104185850 - U2 snRNA snRNA -1 187 1 348 127 0 0 chr1 138479394 138479449 -104184904 + (TG)n Simple_repeat Simple_repeat 1 55 0 204 234 31 0 chr1 138479638 138479702 -104184651 + GA-rich Low_complexity Low_complexity 6 71 0 21 0 0 0 chr1 138481026 138481047 -104183306 + AT_rich Low_complexity Low_complexity 1 21 0 284 324 36 0 chr1 138481573 138481684 -104182669 + MIR SINE MIR 32 146 -62 2250 118 0 0 chr1 138482184 138482489 -104181864 - AluSx SINE Alu -6 306 2 2310 113 0 6 chr1 138482700 138483011 -104181342 + AluSx SINE Alu 1 309 -3 1803 129 10 20 chr1 138483120 138483414 -104180939 + AluSc SINE Alu 3 293 -16 2206 113 7 3 chr1 138483610 138483912 -104180441 + AluSx SINE Alu 1 303 -9 2195 113 0 3 chr1 138484110 138484424 -104179929 - AluSx SINE Alu 0 315 3 583 212 70 50 chr1 138484466 138484673 -104179680 - MLT1F LTR MaLR 0 590 370 1536 272 45 16 chr1 138484777 138485200 -104179153 - LTR16A LTR ERVL -15 435 1 739 242 186 13 chr1 138485203 138485434 -104178919 - LTR33 LTR ERVL -248 273 3 2535 57 0 7 chr1 138485495 138485796 -104178557 + AluY SINE Alu 1 299 -12 1198 169 5 5 chr1 138485969 138486182 -104178171 - AluSp SINE Alu -96 217 5 2168 113 10 3 chr1 138486436 138486737 -104177616 + AluSq SINE Alu 1 303 -10 28 61 0 0 chr1 138486925 138486974 -104177379 + AT_rich Low_complexity Low_complexity 1 49 0 268 308 125 0 chr1 138487041 138487145 -104177208 - L2 LINE L2 -10 3262 3146 359 234 26 0 chr1 138487305 138487382 -104176971 + L1ME3 LINE L1 6055 6133 -29 2243 111 13 3 chr1 138487532 138487839 -104176514 + AluSx SINE Alu 1 310 -2 279 229 121 0 chr1 138488065 138488148 -104176205 - MIR SINE MIR -14 248 156 894 128 0 0 chr1 138488155 138488280 -104176073 - AluSg/x SINE Alu -13 296 172 9467 114 102 101 chr1 138488399 138488827 -104175526 - Tigger1 DNA MER2_type -400 2018 1592 2309 123 0 0 chr1 138488827 138489137 -104175216 - AluSq SINE Alu -3 310 1 9467 114 102 101 chr1 138489137 138489479 -104174874 - Tigger1 DNA MER2_type -826 1592 1252 1968 162 0 3 chr1 138489479 138489782 -104174571 + AluJb SINE Alu 1 302 -10 9467 114 102 101 chr1 138489782 138489940 -104174413 - Tigger1 DNA MER2_type -1166 1252 1096 2065 168 0 0 chr1 138489940 138490250 -104174103 + AluSx SINE Alu 1 310 -2 9467 114 102 101 chr1 138490250 138490531 -104173822 - Tigger1 DNA MER2_type -1322 1096 817 878 201 0 7 chr1 138490531 138490685 -104173668 + FRAM SINE Alu 4 156 -10 9467 114 102 101 chr1 138490685 138491442 -104172911 - Tigger1 DNA MER2_type -1601 817 46 1415 119 0 52 chr1 138491444 138491654 -104172699 + AluSq SINE Alu 1 199 -114 921 137 0 0 chr1 138491888 138492019 -104172334 + FLAM_C SINE Alu 1 131 -2 2328 87 3 16 chr1 138492155 138492289 -104172064 + AluSc SINE Alu 1 135 -174 2286 93 6 3 chr1 138492289 138492601 -104171752 + AluSp SINE Alu 1 313 0 2328 87 3 16 chr1 138492601 138492777 -104171576 + AluSc SINE Alu 135 307 -2 1093 174 21 54 chr1 138493291 138493355 -104170998 + L1MB7 LINE L1 5703 5768 -416 2265 95 7 10 chr1 138493355 138493661 -104170692 - AluSq SINE Alu -8 305 1 1093 174 21 54 chr1 138493661 138493838 -104170515 + L1MB7 LINE L1 5768 5936 -248 859 135 15 0 chr1 138493839 138493972 -104170381 + AluSg/x SINE Alu 174 308 -1 185 0 40 0 chr1 138493974 138493999 -104170354 + (TA)n Simple_repeat Simple_repeat 2 27 0 659 171 14 14 chr1 138494019 138494159 -104170194 + L1MB7 LINE L1 5933 6072 -112 4405 113 22 2 chr1 138494327 138494971 -104169382 - L1PA16 LINE L1 -16 6150 5494 267 114 0 0 chr1 138495333 138495377 -104168976 + (GGA)n Simple_repeat Simple_repeat 2 45 0 1394 124 5 20 chr1 138495763 138495964 -104168389 + AluSg SINE Alu 1 198 -112 316 137 0 0 chr1 138496066 138496117 -104168236 - FRAM/FAM SINE Alu -118 48 1 222 37 0 0 chr1 138496133 138496160 -104168193 + (GA)n Simple_repeat Simple_repeat 2 28 0 384 158 26 197 chr1 138496189 138496257 -104168096 + MER5A DNA MER1_type 64 93 -96 2251 130 0 7 chr1 138496257 138496565 -104167788 - AluSq SINE Alu -7 306 1 384 158 26 197 chr1 138496565 138496648 -104167705 + MER5A DNA MER1_type 93 189 0 280 294 77 28 chr1 138496671 138496814 -104167539 + MIR3 SINE MIR 48 197 -11 2146 110 27 7 chr1 138497091 138497390 -104166963 - AluSg SINE Alu 0 310 6 24 0 0 0 chr1 138497925 138497949 -104166404 + AT_rich Low_complexity Low_complexity 1 24 0 204 205 0 0 chr1 138499858 138499897 -104164456 + (CAGAGA)n Simple_repeat Simple_repeat 6 44 0 260 102 20 0 chr1 138499910 138499959 -104164394 + (TC)n Simple_repeat Simple_repeat 2 51 0 258 329 0 0 chr1 138500723 138500796 -104163557 + L2 LINE L2 3235 3307 -6 2540 90 0 0 chr1 138502643 138502954 -104161399 - AluSx SINE Alu -1 311 1 586 173 0 0 chr1 138503588 138503692 -104160661 + U13 snRNA snRNA 1 104 0 2235 108 0 36 chr1 138505804 138506111 -104158242 - AluSx SINE Alu -6 306 11 1894 144 11 0 chr1 138506114 138506398 -104157955 - AluJb SINE Alu -25 287 1 1888 128 80 0 chr1 138511674 138511948 -104152405 + AluSg SINE Alu 1 296 -14 2171 136 0 3 chr1 138512256 138512558 -104151795 + AluSx SINE Alu 1 301 -11 2754 43 0 0 chr1 138512611 138512916 -104151437 + AluY SINE Alu 1 305 -6 2778 17 0 0 chr1 138513019 138513320 -104151033 - AluYa5 SINE Alu -10 301 1 1864 135 36 0 chr1 138513776 138514070 -104150283 - AluJb SINE Alu 0 304 1 1745 143 11 11 chr1 138514348 138514635 -104149718 + AluSx SINE Alu 10 296 -16 2540 90 0 0 chr1 138515963 138516274 -104148079 - AluSx SINE Alu -1 311 1 586 173 0 0 chr1 138516908 138517012 -104147341 + U13 snRNA snRNA 1 104 0 2235 108 0 36 chr1 138519124 138519431 -104144922 - AluSx SINE Alu -6 306 11 1894 144 11 0 chr1 138519434 138519718 -104144635 - AluJb SINE Alu -25 287 1 1888 128 80 0 chr1 138524994 138525268 -104139085 + AluSg SINE Alu 1 296 -14 2171 136 0 3 chr1 138525576 138525878 -104138475 + AluSx SINE Alu 1 301 -11 2728 43 0 0 chr1 138525931 138526233 -104138120 + AluY SINE Alu 1 302 -9 2177 108 21 0 chr1 138526339 138526625 -104137728 - AluSx SINE Alu -20 292 1 285 284 11 42 chr1 138526668 138526763 -104137590 + L2 LINE L2 3171 3262 -10 2421 84 0 3 chr1 138527075 138527372 -104136981 + AluSx SINE Alu 1 296 -16 180 320 200 10 chr1 138528768 138528868 -104135485 - MIR3 SINE MIR -44 164 46 185 94 31 0 chr1 138529179 138529211 -104135142 + GA-rich Low_complexity Low_complexity 1 33 0 2626 63 0 0 chr1 138529537 138529840 -104134513 + AluY SINE Alu 1 303 -8 2385 104 0 0 chr1 138529851 138530148 -104134205 + AluSx SINE Alu 1 297 -15 1403 148 4 68 chr1 138530186 138530267 -104134086 + AluJo SINE Alu 50 135 -177 2129 130 3 0 chr1 138530267 138530559 -104133794 - AluSg SINE Alu -17 293 1 1403 148 4 68 chr1 138530559 138530741 -104133612 + AluJo SINE Alu 135 296 -16 2268 134 0 6 chr1 138531079 138531393 -104132960 + AluSx SINE Alu 1 312 0 2316 108 0 16 chr1 138532441 138532755 -104131598 + AluSx SINE Alu 1 309 -3 2364 103 3 0 chr1 138533043 138533345 -104131008 + AluSp SINE Alu 1 303 -10 1986 106 12 0 chr1 138534218 138534474 -104129879 + AluSq SINE Alu 1 259 -54 192 77 0 0 chr1 138534490 138534516 -104129837 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 282 271 37 65 chr1 138534535 138534642 -104129711 + L2 LINE L2 3192 3295 -18 606 121 0 136 chr1 138535113 138535253 -104129100 + AluJo SINE Alu 14 134 -178 869 188 32 21 chr1 138535292 138535478 -104128875 + AluJo SINE Alu 121 308 -4 202 333 0 0 chr1 138537455 138537509 -104126844 + polypyrimidine Low_complexity Low_complexity 5 58 0 2392 73 0 3 chr1 138539230 138539545 -104124808 - AluSq SINE Alu 0 314 1 239 0 32 0 chr1 138540100 138540131 -104124222 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2379 84 0 3 chr1 138540482 138540778 -104123575 + AluSg SINE Alu 1 295 -15 1759 135 44 34 chr1 138540925 138541221 -104123132 + AluJb SINE Alu 1 299 -13 258 286 66 0 chr1 138541381 138541472 -104122881 + L2 LINE L2 3175 3271 -1 2117 126 7 7 chr1 138542546 138542848 -104121505 - AluSx SINE Alu -10 302 1 1841 133 72 11 chr1 138543150 138543428 -104120925 + AluSx SINE Alu 1 295 -17 290 345 107 50 chr1 138543990 138544506 -104119847 + L2 LINE L2 1775 2319 -995 2043 105 39 0 chr1 138544564 138544850 -104119503 + AluSx SINE Alu 1 297 -15 194 294 98 22 chr1 138544868 138544908 -104119445 - MIR3 SINE MIR -49 159 123 2352 100 0 28 chr1 138544908 138545227 -104119126 + AluSp SINE Alu 1 310 -3 194 294 98 22 chr1 138545227 138545273 -104119080 - MIR3 SINE MIR -85 123 61 1907 118 14 24 chr1 138545345 138545641 -104118712 - AluSg SINE Alu -12 298 6 180 0 0 0 chr1 138546053 138546073 -104118280 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1294 145 131 69 chr1 138546293 138546583 -104117770 + AluJo SINE Alu 1 308 -4 222 227 23 0 chr1 138546587 138546631 -104117722 + L2 LINE L2 3253 3297 -16 285 116 23 0 chr1 138546639 138546682 -104117671 + HY4 scRNA scRNA 2 45 -48 2330 87 0 0 chr1 138546721 138547031 -104117322 - AluY SINE Alu 0 311 2 186 307 11 57 chr1 138547038 138547126 -104117227 - MIR SINE MIR -60 202 119 947 236 30 0 chr1 138547130 138547329 -104117024 - MER58A DNA MER1_type -19 205 1 299 323 21 13 chr1 138547332 138547435 -104116918 - MIR SINE MIR -102 106 6 2167 84 3 0 chr1 138547442 138547757 -104116596 - AluSq SINE Alu 0 316 1 1929 149 7 0 chr1 138547760 138548069 -104116284 - AluJb SINE Alu -1 311 1 231 233 0 0 chr1 138548160 138548203 -104116150 + L2 LINE L2 3220 3262 -10 219 88 0 0 chr1 138548317 138548351 -104116002 + (TG)n Simple_repeat Simple_repeat 1 34 0 2190 74 14 3 chr1 138549853 138550149 -104114204 + AluSq SINE Alu 1 299 -14 2205 80 3 7 chr1 138550232 138550531 -104113822 - AluY SINE Alu -13 298 1 665 157 17 0 chr1 138550569 138550684 -104113669 - AluJo SINE Alu -108 204 88 687 203 0 15 chr1 138550892 138551025 -104113328 + FLAM_C SINE Alu 3 133 0 2146 108 7 0 chr1 138551189 138551486 -104112867 - AluSc SINE Alu -10 299 1 846 186 0 39 chr1 138551671 138551827 -104112526 + FAM SINE Alu 18 167 -18 2335 66 0 0 chr1 138552248 138552549 -104111804 + AluY SINE Alu 1 301 -10 1927 129 25 0 chr1 138552629 138552915 -104111438 + AluSx SINE Alu 1 293 -19 2119 102 3 0 chr1 138553178 138553473 -104110880 - AluSp SINE Alu -17 296 1 2225 73 3 0 chr1 138553851 138554140 -104110213 - AluY SINE Alu -21 290 1 1403 162 0 0 chr1 138554174 138554402 -104109951 + AluSx SINE Alu 1 228 -84 2165 94 0 7 chr1 138554655 138554996 -104109357 - AluSq SINE Alu 0 313 1 356 269 82 58 chr1 138555110 138555281 -104109072 + MER5B DNA MER1_type 3 177 -1 2253 99 0 0 chr1 138555302 138555595 -104108758 + AluSx SINE Alu 1 293 -19 307 319 42 25 chr1 138555595 138555714 -104108639 + L2 LINE L2 3152 3272 0 2191 103 0 16 chr1 138556157 138556295 -104108058 + AluSx SINE Alu 1 140 -172 2353 54 0 3 chr1 138556295 138556590 -104107763 + AluY SINE Alu 1 294 -17 2191 103 0 16 chr1 138556590 138556763 -104107590 + AluSx SINE Alu 140 307 -5 207 0 0 0 chr1 138557182 138557205 -104107148 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1008 250 93 43 chr1 138557231 138557726 -104106627 + MLT1H LTR MaLR 1 513 -82 2172 104 3 13 chr1 138557726 138558042 -104106311 - AluSp SINE Alu 0 313 1 2074 126 0 3 chr1 138558059 138558360 -104105993 + AluSg SINE Alu 1 300 -10 1606 191 0 3 chr1 138558370 138558663 -104105690 + AluJb SINE Alu 1 292 -20 1581 116 29 159 chr1 138559042 138559387 -104104966 - AluJb SINE Alu -2 300 1 2444 57 0 0 chr1 138559605 138559905 -104104448 - AluY SINE Alu -11 300 1 2091 109 3 7 chr1 138560130 138560432 -104103921 + AluSg SINE Alu 1 301 -9 846 164 7 13 chr1 138560492 138560625 -104103728 - AluSg/x SINE Alu -45 265 132 2063 133 0 0 chr1 138560625 138560926 -104103427 - AluSq SINE Alu -12 301 1 846 164 7 13 chr1 138560926 138560944 -104103409 - AluSg/x SINE Alu -178 132 115 799 157 8 15 chr1 138560972 138561126 -104103227 + FLAM_C SINE Alu 1 153 0 2394 77 0 6 chr1 138561129 138561440 -104102913 + AluSq SINE Alu 5 313 0 1472 141 42 0 chr1 138561440 138561681 -104102672 + AluJo SINE Alu 1 251 -61 395 249 66 66 chr1 138561699 138561880 -104102473 + HAL1 LINE L1 2 182 -2325 1491 96 0 5 chr1 138561912 138562120 -104102233 - AluSg/x SINE Alu -4 308 102 1116 136 0 0 chr1 138562122 138562299 -104102054 + AluSp SINE Alu 137 313 0 828 105 0 0 chr1 138562303 138562417 -104101936 - AluY SINE Alu -196 115 2 2551 51 0 0 chr1 138562490 138562801 -104101552 - AluY SINE Alu 0 311 1 2185 92 13 3 chr1 138562960 138563264 -104101089 - AluSp SINE Alu -6 307 1 488 88 0 0 chr1 138563264 138563332 -104101021 - Alu SINE Alu -10 299 232 1119 100 71 12 chr1 138563332 138563502 -104100851 - AluSq SINE Alu -133 180 1 1924 126 3 0 chr1 138563691 138563976 -104100377 + AluSx SINE Alu 1 286 -26 231 247 0 37 chr1 138564003 138564084 -104100269 + HAL1 LINE L1 1388 1465 -1042 * 889 257 86 41 chr1 138564071 138564488 -104099865 + HAL1 LINE L1 1852 2287 -220 1478 162 51 56 chr1 138564494 138564875 -104099478 - LTR47A LTR ERVL -6 446 26 652 228 66 9 chr1 138564877 138565088 -104099265 + HAL1 LINE L1 2285 2507 0 2028 105 7 0 chr1 138565104 138565390 -104098963 + AluSx SINE Alu 1 288 -24 853 226 0 26 chr1 138565562 138565752 -104098601 - AluJo SINE Alu -1 311 127 276 149 15 60 chr1 138566466 138566533 -104097820 + L1ME LINE L1 5554 5617 -504 347 173 60 120 chr1 138566533 138566581 -104097772 + L1ME LINE L1 5420 5469 -697 2258 95 0 3 chr1 138566581 138566887 -104097466 - AluSg SINE Alu -5 305 1 347 173 60 120 chr1 138566887 138566971 -104097382 + L1ME LINE L1 5469 5544 -622 1599 119 0 0 chr1 138567192 138567428 -104096925 + AluJb SINE Alu 1 236 -76 1930 84 11 4 chr1 138567428 138567690 -104096663 + AluSp SINE Alu 26 290 -23 1819 187 46 67 chr1 138567828 138568305 -104096048 + MLT1C LTR MaLR 1 467 0 2522 47 0 0 chr1 138568623 138568923 -104095430 - AluY SINE Alu -9 302 3 942 76 0 0 chr1 138568923 138569055 -104095298 + AluY SINE Alu 177 308 -3 270 0 0 0 chr1 138569711 138569741 -104094612 + (TG)n Simple_repeat Simple_repeat 1 30 0 2198 75 0 0 chr1 138569741 138570021 -104094332 - AluY SINE Alu -31 280 1 306 234 87 136 chr1 138570260 138570319 -104094034 + MIR SINE MIR 86 146 -116 1760 116 7 14 chr1 138570319 138570627 -104093726 + AluSc SINE Alu 1 306 0 306 234 87 136 chr1 138570627 138570651 -104093702 + MIR SINE MIR 146 170 -92 1816 108 76 7 chr1 138570651 138570939 -104093414 - AluSp SINE Alu -5 308 1 306 234 87 136 chr1 138570939 138571037 -104093316 + MIR SINE MIR 170 260 -2 1843 130 0 3 chr1 138571074 138571399 -104092954 - AluJb SINE Alu 0 324 1 595 309 33 55 chr1 138571451 138571758 -104092595 + L2 LINE L2 2545 2844 -470 1754 188 0 3 chr1 138571833 138572137 -104092216 - AluJb SINE Alu -9 303 1 2027 116 41 0 chr1 138572241 138572534 -104091819 - AluSx SINE Alu -7 305 1 342 263 40 0 chr1 138572534 138572610 -104091743 + L2 LINE L2 3190 3268 -4 190 267 22 0 chr1 138572627 138572672 -104091681 - MIR SINE MIR -13 249 204 3246 159 69 2 chr1 138572675 138573296 -104091057 - L1MB4 LINE L1 -2 6178 5516 294 125 0 0 chr1 138573300 138573348 -104091005 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 669 244 0 0 chr1 138573369 138573500 -104090853 - FRAM SINE Alu -45 131 1 261 0 0 0 chr1 138573503 138573532 -104090821 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1586 171 5 49 chr1 138573538 138573709 -104090644 - L1MB4 LINE L1 -709 5469 5292 1733 118 92 0 chr1 138573709 138573981 -104090372 + AluSx SINE Alu 7 303 -9 1586 171 5 49 chr1 138573981 138574290 -104090063 - L1MB4 LINE L1 -886 5292 5007 1845 137 10 16 chr1 138574318 138574625 -104089728 + AluSq SINE Alu 1 305 -8 637 81 0 35 chr1 138574725 138574811 -104089542 + AluSq/x SINE Alu 55 137 -175 1310 115 34 122 chr1 138574811 138574961 -104089392 + AluSg SINE Alu 4 113 -197 1641 66 0 5 chr1 138574961 138575172 -104089181 + AluY SINE Alu 86 295 -16 1310 115 34 122 chr1 138575172 138575342 -104089011 + AluSg SINE Alu 113 296 -14 1923 97 59 0 chr1 138575432 138575722 -104088631 - AluSg SINE Alu -3 307 1 377 224 77 45 chr1 138577420 138577549 -104086804 + MIR3 SINE MIR 45 184 -42 197 360 162 0 chr1 138577699 138577810 -104086543 - L2 LINE L2 0 3272 3144 2186 101 0 0 chr1 138577853 138578149 -104086204 + AluSx SINE Alu 1 296 -16 691 151 16 161 chr1 138578165 138578299 -104086054 + MER5A DNA MER1_type 17 169 -20 2271 88 0 3 chr1 138578299 138578596 -104085757 + AluSg SINE Alu 1 296 -14 2006 87 49 3 chr1 138578596 138578882 -104085471 + AluSq SINE Alu 1 299 -14 1524 148 18 39 chr1 138578883 138579166 -104085187 - AluJb SINE Alu -35 277 1 691 151 16 161 chr1 138579166 138579220 -104085133 + MER5A DNA MER1_type 167 180 -9 349 360 37 6 chr1 138579246 138579407 -104084946 - L2 LINE L2 -241 3031 2866 1678 100 4 0 chr1 138579424 138579664 -104084689 - AluSx SINE Alu -13 299 59 590 289 36 0 chr1 138579728 138579894 -104084459 - MER5B DNA MER1_type -1 177 6 220 271 82 12 chr1 138579927 138580012 -104084341 - L2 LINE L2 -571 2743 2653 1417 108 82 4 chr1 138580104 138580335 -104084018 - AluSq SINE Alu -6 307 59 2122 90 4 0 chr1 138580335 138580612 -104083741 - AluSp SINE Alu -25 288 11 2077 107 7 17 chr1 138580878 138581178 -104083175 - AluSx SINE Alu -15 297 1 1272 178 0 0 chr1 138581178 138581403 -104082950 - AluJb SINE Alu -2 310 86 1598 179 14 10 chr1 138581410 138581706 -104082647 - AluJb SINE Alu -15 297 1 1092 103 54 80 chr1 138582275 138582380 -104081973 + L1MB3 LINE L1 5963 6069 -114 2074 107 0 17 chr1 138582380 138582679 -104081674 + AluSx SINE Alu 1 294 -18 1092 103 54 80 chr1 138582679 138582797 -104081556 + L1MB3 LINE L1 6069 6180 -3 2167 102 0 3 chr1 138582827 138583130 -104081223 - AluSq SINE Alu -11 302 1 2149 91 3 0 chr1 138583135 138583431 -104080922 - AluY SINE Alu -14 297 1 741 232 68 0 chr1 138583829 138584006 -104080347 + MER5A DNA MER1_type 1 189 0 1865 90 56 8 chr1 138584209 138584476 -104079877 + AluSg SINE Alu 1 280 -30 2188 80 23 3 chr1 138584493 138584794 -104079559 + AluY SINE Alu 1 307 -4 872 86 0 0 chr1 138584925 138585042 -104079311 + AluY SINE Alu 1 117 -194 1479 77 0 31 chr1 138585043 138585265 -104079088 - AluY SINE Alu -9 302 88 328 253 92 58 chr1 138585389 138585563 -104078790 + L1MC4 LINE L1 7836 8015 -27 1903 118 37 0 chr1 138585567 138585863 -104078490 - AluSx SINE Alu -5 307 1 2726 110 10 12 chr1 138585989 138586348 -104078005 - L1PB1 LINE L1 0 6151 5792 405 0 0 0 chr1 138586348 138586393 -104077960 + (TG)n Simple_repeat Simple_repeat 2 46 0 2726 110 10 12 chr1 138586393 138586441 -104077912 - L1PB1 LINE L1 -359 5792 5745 1906 87 8 4 chr1 138586539 138586804 -104077549 - AluSg SINE Alu -44 266 1 3045 152 8 27 chr1 138586804 138587655 -104076698 - L1PB1 LINE L1 -463 5688 4847 1210 144 19 0 chr1 138587654 138587862 -104076491 + L1PB1 LINE L1 4604 4815 -1331 * 2010 144 0 0 chr1 138587963 138588269 -104076084 - AluSx SINE Alu -6 306 1 1174 221 169 20 chr1 138588331 138588739 -104075614 - L1ME1 LINE L1 -5 6161 5693 1164 134 0 30 chr1 138588739 138588940 -104075413 - AluSg/x SINE Alu -9 301 107 904 148 0 90 chr1 138588985 138589174 -104075179 - AluSg/x SINE Alu -14 298 127 281 26 0 26 chr1 138589177 138589216 -104075137 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2193 71 3 0 chr1 138589218 138589500 -104074853 - AluY SINE Alu -28 283 1 213 39 0 0 chr1 138589518 138589544 -104074809 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 379 225 77 53 chr1 138589547 138589560 -104074793 - L1ME1 LINE L1 -945 5201 5190 1894 129 3 0 chr1 138589560 138589847 -104074506 - AluSx SINE Alu -24 288 1 379 225 77 53 chr1 138589847 138590002 -104074351 - L1ME1 LINE L1 -956 5190 5029 1420 174 7 11 chr1 138590015 138590290 -104074063 - AluJo SINE Alu -20 292 19 2468 200 161 29 chr1 138590290 138590479 -104073874 - L1ME1 LINE L1 -1107 5039 4876 2217 101 0 0 chr1 138590479 138590777 -104073576 + AluSx SINE Alu 1 298 -14 2468 200 161 29 chr1 138590777 138591406 -104072947 - L1ME1 LINE L1 -1270 4876 4113 1529 136 9 9 chr1 138591431 138591659 -104072694 - MER1B DNA MER1_type -69 270 43 842 206 37 5 chr1 138591683 138591872 -104072481 - L1ME1 LINE L1 -2037 4109 3915 2183 81 7 3 chr1 138591902 138592198 -104072155 + AluY SINE Alu 1 297 -14 2062 123 0 0 chr1 138592211 138592503 -104071850 + AluSx SINE Alu 1 292 -20 654 214 0 0 chr1 138592503 138592620 -104071733 - FRAM SINE Alu -32 144 28 211 195 24 0 chr1 138592816 138592857 -104071496 + (CGG)n Simple_repeat Simple_repeat 2 43 0 577 219 0 39 chr1 138593548 138593676 -104070677 + L2 LINE L2 3187 3309 -4 2173 104 0 0 chr1 138594217 138594516 -104069837 - AluSx SINE Alu -13 299 1 1260 122 20 0 chr1 138594517 138594713 -104069640 - AluSg/x SINE Alu 0 310 111 1678 157 32 0 chr1 138594713 138594993 -104069360 + AluSx SINE Alu 4 292 -20 2296 72 0 13 chr1 138595125 138595429 -104068924 - AluSg SINE Alu -10 300 1 194 308 75 37 chr1 138595507 138595614 -104068739 + L3b LINE CR1 1455 1565 -18 1957 127 20 7 chr1 138595906 138596198 -104068155 - AluSx SINE Alu -16 296 1 519 181 0 0 chr1 138598133 138598216 -104066137 + FRAM/FAM SINE Alu 1 78 -98 2242 117 0 0 chr1 138598412 138598721 -104065632 - AluSg SINE Alu -1 309 1 187 273 76 0 chr1 138599130 138599196 -104065157 - L2 LINE L2 -62 3210 3140 2217 111 0 0 chr1 138599903 138600210 -104064143 - AluSq SINE Alu -6 307 1 855 118 0 22 chr1 138600213 138600349 -104064004 - AluSq/x SINE Alu -179 133 1 1911 141 3 0 chr1 138600394 138600692 -104063661 - AluSx SINE Alu -13 299 1 1985 131 13 0 chr1 138601125 138601423 -104062930 - AluSx SINE Alu -10 302 1 1718 160 21 0 chr1 138601425 138601712 -104062641 - AluJb SINE Alu -19 293 1 2123 93 0 0 chr1 138601739 138602018 -104062335 - AluY SINE Alu -32 279 1 2233 89 0 7 chr1 138602078 138602381 -104061972 - AluSg SINE Alu -9 301 1 1946 111 0 24 chr1 138602388 138602701 -104061652 - AluSg SINE Alu 0 306 1 2069 127 0 6 chr1 138602715 138603029 -104061324 - AluSx SINE Alu 0 312 1 2448 60 0 0 chr1 138603307 138603606 -104060747 + AluY SINE Alu 1 299 -12 541 265 133 28 chr1 138603616 138603827 -104060526 - MIR SINE MIR -27 235 3 183 162 0 0 chr1 138604263 138604300 -104060053 + (TG)n Simple_repeat Simple_repeat 2 38 0 1983 100 27 23 chr1 138604643 138604944 -104059409 + AluSx SINE Alu 1 302 -10 1824 161 0 3 chr1 138605388 138605680 -104058673 + AluJb SINE Alu 1 291 -21 1316 132 175 0 chr1 138605730 138605987 -104058366 - AluSx SINE Alu -10 302 1 1173 185 22 0 chr1 138606012 138606234 -104058119 - AluJo SINE Alu -85 227 1 3092 146 25 15 chr1 138606716 138606827 -104057526 - MER1A DNA MER1_type -2173 529 421 2135 100 3 0 chr1 138606827 138607127 -104057226 - AluSp SINE Alu -9 304 4 1857 130 0 40 chr1 138607129 138607429 -104056924 - AluSg SINE Alu -16 294 7 3092 146 25 15 chr1 138607429 138607794 -104056559 - MER1A DNA MER1_type -2281 421 45 2077 95 11 0 chr1 138607844 138608129 -104056224 + AluSq SINE Alu 2 289 -24 33 25 0 0 chr1 138608129 138608169 -104056184 + AT_rich Low_complexity Low_complexity 1 40 0 2448 53 0 3 chr1 138608408 138608710 -104055643 - AluY SINE Alu -10 301 1 1770 63 55 24 chr1 138608899 138609153 -104055200 + AluY SINE Alu 38 299 -12 2110 108 3 0 chr1 138609166 138609463 -104054890 + AluSp SINE Alu 1 298 -15 2144 98 0 44 chr1 138609874 138610191 -104054162 - AluSx SINE Alu -9 303 1 1564 168 0 36 chr1 138610460 138610764 -104053589 + AluJo SINE Alu 1 293 -19 2239 99 0 3 chr1 138610811 138611113 -104053240 - AluSp SINE Alu -11 302 2 1438 187 78 0 chr1 138611114 138611397 -104052956 - AluSx SINE Alu -7 305 1 373 300 0 0 chr1 138611887 138611977 -104052376 + MER3 DNA MER1_type 1 90 -119 740 183 8 0 chr1 138612074 138612200 -104052153 + AluJo/FLAM SINE Alu 2 128 -174 1737 169 16 3 chr1 138612203 138612511 -104051842 + AluJb SINE Alu 1 312 0 2276 88 3 3 chr1 138612774 138613081 -104051272 - AluSp SINE Alu -6 307 1 1814 149 0 3 chr1 138613081 138613377 -104050976 - AluSq SINE Alu -18 295 1 2241 87 3 0 chr1 138613473 138613773 -104050580 + AluY SINE Alu 1 301 -10 189 0 0 0 chr1 138613879 138613900 -104050453 + (CA)n Simple_repeat Simple_repeat 2 22 0 1719 87 0 29 chr1 138613902 138614144 -104050209 - AluSc SINE Alu -24 285 51 2223 93 3 10 chr1 138614303 138614616 -104049737 - AluSp SINE Alu -1 312 2 1022 75 0 8 chr1 138614617 138614751 -104049602 - AluSc SINE Alu -176 133 1 541 160 28 0 chr1 138614751 138614857 -104049496 + Charlie1 DNA MER1_type 2637 2745 -16 221 244 71 51 chr1 138615196 138615320 -104049033 + L2 LINE L2 3000 3127 -186 249 65 0 0 chr1 138615327 138615358 -104048995 - AluSx SINE Alu -88 211 181 1298 134 15 10 chr1 138615361 138615562 -104048791 - AluSx SINE Alu -110 202 1 2095 87 13 7 chr1 138615566 138615866 -104048487 - AluSc SINE Alu -7 302 1 529 246 47 95 chr1 138615866 138616059 -104048294 + L2 LINE L2 3113 3297 -16 1504 174 17 7 chr1 138616059 138616347 -104048006 + AluJo SINE Alu 5 295 -17 529 246 47 95 chr1 138616347 138616364 -104047989 + L2 LINE L2 3297 3313 0 2415 70 0 0 chr1 138616419 138616718 -104047635 - AluY SINE Alu -12 299 1 333 282 40 32 chr1 138616859 138616983 -104047370 + MIR SINE MIR 138 262 0 1705 107 96 11 chr1 138617267 138617573 -104046780 - AluSq SINE Alu 0 313 1 917 182 0 29 chr1 138617607 138617777 -104046576 + FAM SINE Alu 4 168 -7 745 153 0 8 chr1 138617783 138617901 -104046452 - AluJb SINE Alu -195 117 1 1619 188 0 7 chr1 138617905 138618209 -104046144 - AluJo SINE Alu -10 302 1 2207 84 0 23 chr1 138618221 138618531 -104045822 - AluSx SINE Alu -9 303 1 349 287 93 7 chr1 138618906 138619056 -104045297 + MER103 DNA DNA 2 164 -2 405 58 0 0 chr1 138619356 138619408 -104044945 + (TTA)n Simple_repeat Simple_repeat 1 52 0 1823 95 27 0 chr1 138619416 138619554 -104044799 - AluSq SINE Alu -43 270 137 387 0 0 0 chr1 138619554 138619597 -104044756 + (TG)n Simple_repeat Simple_repeat 2 44 0 1823 95 27 0 chr1 138619597 138619721 -104044632 - AluSq SINE Alu -176 137 1 856 209 18 6 chr1 138619786 138619949 -104044404 + FAM SINE Alu 1 165 -10 1468 159 19 65 chr1 138620092 138620400 -104043953 + AluJb SINE Alu 1 294 -18 21 0 0 0 chr1 138620407 138620428 -104043925 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 138621064 138621087 -104043266 + (A)n Simple_repeat Simple_repeat 1 23 0 2260 96 0 3 chr1 138621088 138621390 -104042963 + AluSp SINE Alu 2 302 -11 1564 168 0 36 chr1 138621437 138621741 -104042612 - AluJo SINE Alu -19 293 1 2118 101 0 44 chr1 138622010 138622327 -104042026 + AluSx SINE Alu 1 303 -9 2118 107 3 0 chr1 138622735 138623033 -104041320 - AluSp SINE Alu -14 299 1 1860 96 64 7 chr1 138623044 138623326 -104041027 - AluSg SINE Alu -12 298 1 692 174 0 0 chr1 138623364 138623473 -104040880 - FLAM_C SINE Alu -33 110 2 1423 102 0 0 chr1 138623552 138623738 -104040615 + AluSg/x SINE Alu 88 273 -39 22 0 0 0 chr1 138623743 138623765 -104040588 + AT_rich Low_complexity Low_complexity 1 22 0 2121 92 7 0 chr1 138625839 138626144 -104038209 - AluSq SINE Alu 0 307 1 277 203 54 68 chr1 138627226 138627300 -104037053 + L1ME3A LINE L1 6036 6108 -62 1970 130 0 17 chr1 138627300 138627601 -104036752 + AluJb SINE Alu 1 296 -16 28 29 0 0 chr1 138627639 138627674 -104036679 + AT_rich Low_complexity Low_complexity 1 35 0 461 151 12 0 chr1 138627753 138627839 -104036514 + (CA)n Simple_repeat Simple_repeat 2 88 0 1262 150 93 72 chr1 138627859 138627944 -104036409 - MER47A DNA MER2_type -1957 366 284 2032 110 10 0 chr1 138627944 138628236 -104036117 + AluSx SINE Alu 1 295 -17 1262 150 93 72 chr1 138628236 138628484 -104035869 - MER47A DNA MER2_type -2039 284 26 2059 107 23 3 chr1 138628596 138628896 -104035457 + AluSx SINE Alu 1 306 -6 2244 94 3 3 chr1 138628958 138629265 -104035088 - AluSq SINE Alu 0 313 7 226 360 22 0 chr1 138629395 138629484 -104034869 + L2 LINE L2 3182 3272 0 225 227 13 80 chr1 138630117 138630192 -104034161 + MIR SINE MIR 68 137 -125 31 0 0 0 chr1 138630391 138630422 -104033931 + GC_rich Low_complexity Low_complexity 1 31 0 2180 77 0 0 chr1 138630440 138630712 -104033641 - AluSp SINE Alu -41 272 1 2130 92 20 0 chr1 138630718 138631013 -104033340 - AluSp SINE Alu -12 301 1 240 69 0 0 chr1 138631043 138631072 -104033281 - U6 snRNA snRNA -77 30 2 1983 139 0 0 chr1 138631200 138631494 -104032859 + AluJb SINE Alu 7 300 -12 2128 104 0 0 chr1 138631500 138631789 -104032564 + AluSg SINE Alu 1 289 -21 23 0 0 0 chr1 138631870 138631893 -104032460 + AT_rich Low_complexity Low_complexity 1 23 0 1488 186 3 46 chr1 138632023 138632329 -104032024 - AluJo SINE Alu -19 293 1 2345 55 3 0 chr1 138632903 138633196 -104031157 + AluY SINE Alu 1 294 -17 237 65 0 0 chr1 138633844 138633875 -104030478 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 2276 85 0 3 chr1 138634683 138634988 -104029365 - AluSc SINE Alu -5 304 1 1987 121 10 3 chr1 138635045 138635343 -104029010 + AluSq SINE Alu 1 300 -13 2011 89 11 0 chr1 138635359 138635639 -104028714 + AluSc SINE Alu 18 300 -9 2076 108 7 0 chr1 138635650 138635947 -104028406 + AluSp SINE Alu 1 299 -14 432 263 115 46 chr1 138636342 138636559 -104027794 - MIR SINE MIR -29 233 2 2261 74 7 0 chr1 138636667 138636964 -104027389 + AluSg SINE Alu 1 299 -11 2643 185 168 52 chr1 138637098 138637380 -104026973 + L1MC1 LINE L1 4264 4512 -1821 1250 153 183 46 chr1 138637380 138637487 -104026866 + AluJb SINE Alu 1 92 -210 1750 162 0 10 chr1 138637487 138637796 -104026557 - AluJb SINE Alu -6 306 1 1250 153 183 46 chr1 138637796 138637950 -104026403 + AluJb SINE Alu 92 298 -4 2643 185 168 52 chr1 138637950 138638020 -104026333 + L1MC1 LINE L1 4512 4572 -1761 2043 105 0 7 chr1 138638020 138638334 -104026019 - AluSx SINE Alu 0 312 1 2146 99 7 0 chr1 138638334 138638627 -104025726 - AluSp SINE Alu -17 296 1 2643 185 168 52 chr1 138638627 138638909 -104025444 + L1MC1 LINE L1 4572 4820 -1513 1900 127 14 0 chr1 138638909 138639201 -104025152 - AluSg SINE Alu -14 296 1 2643 185 168 52 chr1 138639201 138639324 -104025029 + L1MC1 LINE L1 4820 4927 -1406 1957 129 3 3 chr1 138639324 138639619 -104024734 + AluSx SINE Alu 1 295 -17 2643 185 168 52 chr1 138639619 138639742 -104024611 + L1MC1 LINE L1 4927 5034 -1299 1956 122 7 0 chr1 138639742 138640029 -104024324 + AluSx SINE Alu 6 294 -18 2254 65 17 0 chr1 138640030 138640321 -104024032 + AluY SINE Alu 1 296 -15 2643 185 168 52 chr1 138640321 138640404 -104023949 + L1MC1 LINE L1 5034 5106 -1227 2116 108 3 0 chr1 138640404 138640699 -104023654 + AluSp SINE Alu 1 296 -17 1998 100 39 0 chr1 138640705 138640986 -104023367 + AluSp SINE Alu 7 298 -15 2643 185 168 52 chr1 138640986 138641161 -104023192 + L1MC1 LINE L1 5110 5592 -741 1220 116 6 0 chr1 138641170 138641343 -104023010 - AluSp SINE Alu -139 174 1 1948 108 0 66 chr1 138641345 138641523 -104022830 - AluSq SINE Alu -2 311 123 180 111 0 0 chr1 138641523 138641550 -104022803 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1948 108 0 66 chr1 138641550 138641569 -104022784 - AluSq SINE Alu -190 123 104 1961 123 0 3 chr1 138641569 138641854 -104022499 - AluSg SINE Alu -26 284 1 1948 108 0 66 chr1 138641854 138641988 -104022365 - AluSq SINE Alu -209 104 1 4374 127 39 15 chr1 138641990 138642273 -104022080 + L1MC1 LINE L1 5577 5852 -481 2246 78 0 3 chr1 138642273 138642567 -104021786 - AluSg SINE Alu -17 293 1 4374 127 39 15 chr1 138642567 138643022 -104021331 + L1MC1 LINE L1 5852 6333 0 1359 197 0 66 chr1 138643070 138643375 -104020978 + AluJo SINE Alu 1 285 -17 440 257 150 118 chr1 138643375 138643744 -104020609 + L2 LINE L2 2933 3313 0 234 0 0 0 chr1 138645155 138645181 -104019172 + (CCG)n Simple_repeat Simple_repeat 2 27 0 2299 71 0 7 chr1 138646097 138646391 -104017962 - AluSq SINE Alu -21 292 1 275 295 114 0 chr1 138647091 138647196 -104017157 - MIR SINE MIR -97 165 49 1975 79 0 16 chr1 138648152 138648404 -104015949 - AluSg/x SINE Alu 0 312 65 347 312 64 23 chr1 138648415 138648588 -104015765 + L2 LINE L2 2686 2865 -449 21 0 0 0 chr1 138648651 138648672 -104015681 + AT_rich Low_complexity Low_complexity 1 21 0 243 79 0 0 chr1 138648712 138648750 -104015603 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 2046 117 0 40 chr1 138648750 138648903 -104015450 - AluSx SINE Alu -26 286 149 2298 106 0 7 chr1 138648903 138649206 -104015147 - AluSq SINE Alu -10 303 3 2046 117 0 40 chr1 138649206 138649350 -104015003 - AluSx SINE Alu -163 149 1 275 303 13 13 chr1 138649464 138649540 -104014813 + L2 LINE L2 3183 3258 -14 1447 141 53 71 chr1 138649746 138649886 -104014467 - AluJb SINE Alu -32 280 139 2388 31 37 74 chr1 138649886 138650209 -104014144 - AluY SINE Alu 0 311 1 1447 141 53 71 chr1 138650209 138650222 -104014131 - AluJb SINE Alu -173 139 127 2322 112 0 3 chr1 138650222 138650534 -104013819 - AluSx SINE Alu -1 311 1 1447 141 53 71 chr1 138650534 138650662 -104013691 - AluJb SINE Alu -185 127 3 226 289 44 11 chr1 138650720 138650810 -104013543 + MIR SINE MIR 46 138 -124 1911 159 3 7 chr1 138651018 138651326 -104013027 - AluSx SINE Alu -1 311 5 1253 193 11 67 chr1 138651664 138651812 -104012541 - MIR SINE MIR -4 258 130 2276 84 3 22 chr1 138651812 138652123 -104012230 - AluY SINE Alu -6 305 1 1253 193 11 67 chr1 138652123 138652244 -104012109 - MIR SINE MIR -132 130 4 484 196 31 21 chr1 138652693 138652790 -104011563 - L2 LINE L2 -16 3297 3200 1038 118 65 0 chr1 138652790 138652943 -104011410 + AluSg/x SINE Alu 129 291 -21 372 22 0 0 chr1 138652943 138652988 -104011365 + (CA)n Simple_repeat Simple_repeat 2 46 0 1748 261 76 54 chr1 138652993 138653479 -104010874 - L2 LINE L2 -109 3204 2686 2446 90 0 0 chr1 138653479 138653780 -104010573 - AluSx SINE Alu -10 302 2 1748 261 76 54 chr1 138653780 138654152 -104010201 - L2 LINE L2 -627 2686 2324 463 151 57 19 chr1 138654152 138654258 -104010095 - L1MB8 LINE L1 -2 6176 6067 304 200 0 0 chr1 138654266 138654336 -104010017 - L2 LINE L2 -1089 2225 2156 4341 195 45 5 chr1 138654393 138655214 -104009139 + MER21B LTR ERV1 1 854 -9 2552 40 0 13 chr1 138656976 138657274 -104007079 - AluY SINE Alu -17 294 1 2317 104 10 0 chr1 138657403 138657711 -104006642 + AluSx SINE Alu 1 311 -1 2489 54 7 0 chr1 138657793 138658088 -104006265 + AluY SINE Alu 1 297 -14 27 29 0 0 chr1 138658291 138658325 -104006028 + AT_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr1 138658340 138658371 -104005982 + AT_rich Low_complexity Low_complexity 1 31 0 457 278 23 23 chr1 138658790 138658923 -104005430 - MIR SINE MIR -126 136 4 571 177 43 21 chr1 138659029 138659170 -104005183 + Charlie1 DNA MER1_type 2427 2570 -191 2031 121 10 16 chr1 138659170 138659475 -104004878 + AluSx SINE Alu 1 303 -9 2152 107 0 10 chr1 138659488 138659787 -104004566 + AluSg SINE Alu 13 308 -2 755 197 0 0 chr1 138659901 138660023 -104004330 - FRAM SINE Alu -31 145 24 2370 77 3 0 chr1 138660046 138660344 -104004009 - AluY SINE Alu -10 301 3 2199 79 7 17 chr1 138660349 138660641 -104003712 - AluSg1 SINE Alu 0 309 21 230 242 32 0 chr1 138660726 138660788 -104003565 + L1M3 LINE L1 5666 5729 -433 1569 190 8 0 chr1 138660799 138661062 -104003291 + AluJo SINE Alu 1 265 -47 2485 63 7 3 chr1 138661088 138661391 -104002962 + AluSp SINE Alu 1 304 -9 323 205 53 33 chr1 138661400 138661539 -104002814 + L1M3 LINE L1 5713 5851 -327 2189 140 49 17 chr1 138661649 138662056 -104002297 - L1MB3 LINE L1 0 6183 5764 1613 153 60 11 chr1 138662059 138662340 -104002013 - AluSx SINE Alu -17 295 1 248 267 48 19 chr1 138662413 138662518 -104001835 + L1M4 LINE L1 3359 3466 -2680 1775 172 7 16 chr1 138662645 138662953 -104001400 - AluJb SINE Alu -7 305 1 623 167 0 146 chr1 138663028 138663172 -104001181 - FLAM_A SINE Alu -10 123 1 21 0 0 0 chr1 138663800 138663821 -104000532 + AT_rich Low_complexity Low_complexity 1 21 0 3827 158 64 3 chr1 138664074 138664732 -103999621 + MER44D DNA MER2_type 36 605 0 1781 156 28 3 chr1 138664821 138665103 -103999250 - AluSx SINE Alu -23 289 1 2315 97 3 3 chr1 138665120 138665419 -103998934 - AluSp SINE Alu -14 299 1 192 354 0 0 chr1 138666246 138666311 -103998042 - MIR3 SINE MIR -9 199 135 810 286 0 0 chr1 138666315 138666497 -103997856 - AluJb SINE Alu -14 298 117 2231 95 37 0 chr1 138666563 138666858 -103997495 - AluSx SINE Alu -6 306 1 294 219 61 12 chr1 138667130 138667212 -103997141 - L1ME LINE L1 -330 5791 5706 1574 254 56 41 chr1 138667818 138668051 -103996302 - L2 LINE L2 0 3313 3085 2295 99 13 0 chr1 138668051 138668353 -103996000 - AluSx SINE Alu -6 306 1 1574 254 56 41 chr1 138668353 138668891 -103995462 - L2 LINE L2 -228 3085 2535 888 196 41 48 chr1 138668892 138669144 -103995209 - L1MD3 LINE L1 0 8042 7803 735 133 46 46 chr1 138669150 138669301 -103995052 - MLT1B LTR MaLR 0 390 240 871 230 37 26 chr1 138669304 138669495 -103994858 - AluJb SINE Alu -45 267 75 280 250 50 0 chr1 138669495 138669575 -103994778 + MIR SINE MIR 166 249 -13 2313 96 7 3 chr1 138669586 138669889 -103994464 + AluSx SINE Alu 1 304 -8 2289 101 7 3 chr1 138669921 138670227 -103994126 + AluSx SINE Alu 6 312 0 2043 124 10 0 chr1 138670237 138670528 -103993825 + AluSx SINE Alu 1 294 -18 229 234 0 0 chr1 138671366 138671413 -103992940 + A-rich Low_complexity Low_complexity 1 47 0 2388 80 0 7 chr1 138671712 138672011 -103992342 + AluSp SINE Alu 1 297 -16 874 163 14 20 chr1 138672023 138672037 -103992316 + AluSg/x SINE Alu 122 135 -177 2242 113 3 0 chr1 138672037 138672337 -103992016 + AluSp SINE Alu 1 301 -12 874 163 14 20 chr1 138672337 138672469 -103991884 + AluSg/x SINE Alu 135 267 -45 486 308 139 14 chr1 138672641 138672849 -103991504 - MIR SINE MIR -23 239 6 25 0 0 0 chr1 138673410 138673435 -103990918 + AT_rich Low_complexity Low_complexity 1 25 0 2040 97 14 24 chr1 138673437 138673753 -103990600 + AluSq SINE Alu 1 313 0 1792 149 23 19 chr1 138673798 138674107 -103990246 + AluJo SINE Alu 1 310 -2 2219 123 0 16 chr1 138674984 138675301 -103989052 + AluSx SINE Alu 1 312 0 254 306 10 10 chr1 138675757 138675855 -103988498 + (TCCA)n Simple_repeat Simple_repeat 4 101 0 2350 110 0 0 chr1 138676278 138676665 -103987688 - AluY SINE Alu 0 387 1 335 256 0 0 chr1 138676995 138677077 -103987276 - MER103 DNA DNA -1 165 84 2056 85 14 18 chr1 138677128 138677430 -103986923 + AluY SINE Alu 1 301 0 615 293 40 84 chr1 138677912 138678023 -103986330 - MIR SINE MIR 0 262 148 2336 66 7 26 chr1 138678023 138678326 -103986027 - AluSp SINE Alu -16 297 1 615 293 40 84 chr1 138678326 138678487 -103985866 - MIR SINE MIR -114 148 2 579 265 113 65 chr1 138678814 138678942 -103985411 + L1M4 LINE L1 4015 4135 -2011 2116 135 0 0 chr1 138678942 138679239 -103985114 + AluSx SINE Alu 1 297 -15 579 265 113 65 chr1 138679239 138679315 -103985038 + L1M4 LINE L1 4135 4206 -1940 945 216 98 5 chr1 138679315 138679519 -103984834 - MER58A DNA MER1_type 0 224 2 579 265 113 65 chr1 138679519 138679897 -103984456 + L1M4 LINE L1 4206 4626 -1520 22 0 0 0 chr1 138680029 138680051 -103984302 + AT_rich Low_complexity Low_complexity 1 22 0 1239 138 5 20 chr1 138680091 138680286 -103984067 + AluJo SINE Alu 2 193 -119 897 123 0 36 chr1 138680509 138680647 -103983706 - FLAM_C SINE Alu 0 133 1 946 167 0 19 chr1 138680676 138680832 -103983521 + AluJo SINE Alu 1 153 -159 4436 153 19 3 chr1 138680883 138681615 -103982738 - Tigger2 DNA MER2_type -1974 744 1 2329 103 6 0 chr1 138681946 138682257 -103982096 - AluSq SINE Alu 0 313 1 1950 159 0 9 chr1 138682270 138682585 -103981768 - AluJo SINE Alu 0 312 1 405 177 0 0 chr1 138682594 138682673 -103981680 - L1MD3 LINE L1 0 7995 7917 252 281 0 22 chr1 138682681 138682770 -103981583 - L1MC4 LINE L1 -1339 6703 6617 232 270 22 11 chr1 138682765 138682854 -103981499 + L1MC4 LINE L1 6614 6703 -1339 * 252 86 0 0 chr1 138682860 138682895 -103981458 + (CA)n Simple_repeat Simple_repeat 2 36 0 2181 173 113 60 chr1 138682900 138682990 -103981363 - L1MC3 LINE L1 -77 7708 7624 2127 94 35 0 chr1 138682990 138683276 -103981077 - AluSg SINE Alu -14 296 1 2181 173 113 60 chr1 138683276 138683396 -103980957 - L1MC3 LINE L1 -161 7624 7512 225 0 0 0 chr1 138683396 138683421 -103980932 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1821 141 0 45 chr1 138683428 138683718 -103980635 - AluJb SINE Alu -31 281 5 2181 173 113 60 chr1 138683718 138684099 -103980254 - L1MC3 LINE L1 -278 7507 7076 229 250 8 129 chr1 138684109 138684233 -103980120 + L1MEd LINE L1 383 491 -5925 824 251 105 97 chr1 138684340 138684584 -103979769 + L1MEd LINE L1 858 1099 -5508 2125 93 3 17 chr1 138684584 138684896 -103979457 + AluSx SINE Alu 1 308 0 824 251 105 97 chr1 138684896 138685667 -103978686 + L1MEd LINE L1 1099 1910 -4697 840 135 8 30 chr1 138685687 138685820 -103978533 - AluJo SINE Alu -176 136 7 2329 106 0 0 chr1 138685998 138686309 -103978044 + AluSx SINE Alu 1 311 -1 1218 106 75 11 chr1 138686396 138686584 -103977769 + AluSg/x SINE Alu 107 306 -4 1986 100 29 4 chr1 138686601 138686880 -103977473 + AluSx SINE Alu 5 290 -22 1385 188 53 14 chr1 138686955 138687237 -103977116 + AluJo SINE Alu 13 305 -7 345 232 43 49 chr1 138687240 138687404 -103976949 + L1MEd LINE L1 2312 2474 -3952 1644 162 50 20 chr1 138687559 138687862 -103976491 + AluJb SINE Alu 1 312 0 509 296 88 89 chr1 138687866 138688417 -103975936 + L1MC4a LINE L1 7154 7785 -257 2223 98 3 13 chr1 138688417 138688722 -103975631 - AluSp SINE Alu -11 302 1 509 296 88 89 chr1 138688722 138688953 -103975400 + L1MC4a LINE L1 7785 8015 -27 2009 118 37 0 chr1 138688957 138689253 -103975100 - AluSx SINE Alu -5 307 1 6157 139 9 28 chr1 138689379 138689738 -103974615 - L1PB1 LINE L1 0 6151 5786 315 0 0 0 chr1 138689738 138689773 -103974580 + (TG)n Simple_repeat Simple_repeat 2 36 0 6157 139 9 28 chr1 138689773 138689886 -103974467 - L1PB1 LINE L1 -365 5786 5672 2306 85 7 0 chr1 138689886 138690181 -103974172 - AluSg SINE Alu -13 297 1 6157 139 9 28 chr1 138690181 138691032 -103973321 - L1PB1 LINE L1 -479 5672 4847 1209 149 19 0 chr1 138691031 138691239 -103973114 + L1PB1 LINE L1 4604 4815 -1331 * 2264 100 3 13 chr1 138691340 138691649 -103972704 - AluSx SINE Alu -6 306 1 2048 114 3 26 chr1 138691684 138691991 -103972362 - AluSg SINE Alu -10 300 1 180 0 0 0 chr1 138691995 138692015 -103972338 + (T)n Simple_repeat Simple_repeat 1 20 0 1781 178 0 0 chr1 138692113 138692405 -103971948 + AluJb SINE Alu 1 292 -20 1086 133 17 11 chr1 138692419 138692600 -103971753 - Tigger1 DNA MER2_type -105 2313 2132 1280 104 6 17 chr1 138692606 138692779 -103971574 - AluSc SINE Alu -138 171 1 1110 106 0 0 chr1 138692779 138692930 -103971423 - Tigger1 DNA MER2_type -796 1622 1472 801 145 0 36 chr1 138692931 138693069 -103971284 - FLAM_C SINE Alu -10 133 1 2182 100 10 13 chr1 138693073 138693372 -103970981 - AluSx SINE Alu -14 298 1 2400 61 7 7 chr1 138693377 138693673 -103970680 - AluY SINE Alu -15 296 1 7567 115 62 19 chr1 138693677 138695056 -103969297 - Tigger1 DNA MER2_type -944 1474 24 2204 136 0 3 chr1 138695149 138695459 -103968894 - AluSx SINE Alu -3 309 1 1922 130 4 7 chr1 138695644 138695920 -103968433 - AluSx SINE Alu -37 275 1 350 124 83 0 chr1 138696076 138696197 -103968156 + (TA)n Simple_repeat Simple_repeat 1 131 0 2440 50 0 0 chr1 138696273 138696553 -103967800 + AluY SINE Alu 25 304 -7 186 0 57 29 chr1 138696576 138696611 -103967742 + (TA)n Simple_repeat Simple_repeat 1 36 0 325 302 73 5 chr1 138696626 138696818 -103967535 - L1MDa LINE L1 -4556 1984 1780 896 116 52 19 chr1 138696841 138696996 -103967357 - L1MA3 LINE L1 -5 6300 6141 1472 184 15 4 chr1 138697013 138697280 -103967073 - AluJb SINE Alu -28 284 15 750 152 36 0 chr1 138697411 138697549 -103966804 + MLT1A1 LTR MaLR 223 365 0 2364 75 3 0 chr1 138697636 138697930 -103966423 - AluY SINE Alu -16 295 1 253 222 0 0 chr1 138697930 138697984 -103966369 - L1 LINE L1 -1328 4818 4765 246 294 160 0 chr1 138697997 138698116 -103966237 - MIR SINE MIR -72 190 53 2192 105 3 10 chr1 138698150 138698446 -103965907 - AluSx SINE Alu -18 294 1 1488 65 0 5 chr1 138699003 138699189 -103965164 + AluSc SINE Alu 1 185 -124 448 98 122 0 chr1 138699189 138699271 -103965082 + AluSc SINE Alu 218 309 0 338 23 0 0 chr1 138699374 138699417 -103964936 - AluY SINE Alu -259 43 1 2670 26 0 10 chr1 138699609 138699913 -103964440 + AluY SINE Alu 1 301 -10 211 195 24 0 chr1 138700074 138700115 -103964238 + (CGG)n Simple_repeat Simple_repeat 2 43 0 525 219 0 39 chr1 138700807 138700935 -103963418 + L2 LINE L2 3187 3309 -4 2298 104 0 0 chr1 138701475 138701774 -103962579 - AluSx SINE Alu -13 299 1 2084 117 16 10 chr1 138701774 138701946 -103962407 - AluSp SINE Alu -3 310 134 2365 91 3 0 chr1 138701946 138702255 -103962098 - AluY SINE Alu -1 310 1 2084 117 16 10 chr1 138702255 138702389 -103961964 - AluSp SINE Alu -179 134 2 2149 107 17 7 chr1 138702390 138702680 -103961673 - AluSg SINE Alu -17 293 1 968 176 21 5 chr1 138702680 138702868 -103961485 + L1M4 LINE L1 4844 5034 -1112 1922 142 0 14 chr1 138702874 138703163 -103961190 + AluSx SINE Alu 1 285 -27 325 164 0 33 chr1 138703215 138703276 -103961077 + Alu SINE Alu 234 292 -9 1924 132 11 0 chr1 138703281 138703554 -103960799 + AluSx SINE Alu 1 276 -36 419 224 132 36 chr1 138703750 138703969 -103960384 - L1ME4a LINE L1 -176 5945 5706 1760 145 29 35 chr1 138703973 138704102 -103960251 + AluSx SINE Alu 1 129 -183 2426 70 10 0 chr1 138704102 138704402 -103959951 + AluY SINE Alu 1 303 -8 2297 102 7 0 chr1 138704405 138704699 -103959654 + AluSx SINE Alu 1 296 -16 1760 145 29 35 chr1 138704699 138704876 -103959477 + AluSx SINE Alu 131 309 -3 2265 69 10 10 chr1 138704946 138705258 -103959095 - AluY SINE Alu 0 311 1 1714 197 3 10 chr1 138705259 138705559 -103958794 - AluJo SINE Alu -14 298 1 23 24 0 24 chr1 138705561 138705581 -103958772 + AT_rich Low_complexity Low_complexity 1 20 -20 833 172 23 17 chr1 138705581 138705755 -103958598 + FAM SINE Alu 1 175 0 23 24 0 24 chr1 138705755 138705775 -103958578 + AT_rich Low_complexity Low_complexity 20 40 0 668 188 0 51 chr1 138706265 138706403 -103957950 + FLAM_C SINE Alu 3 133 0 1911 73 4 0 chr1 138706478 138706712 -103957641 - AluSq SINE Alu -78 235 1 252 0 0 0 chr1 138707256 138707284 -103957069 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1760 116 93 0 chr1 138707287 138707546 -103956807 - AluSg SINE Alu -25 285 3 1851 108 124 0 chr1 138707558 138707817 -103956536 - AluSq SINE Alu -18 295 5 570 270 22 38 chr1 138707860 138708045 -103956308 - MIR3 SINE MIR -7 201 20 568 138 4 2 chr1 138708180 138708438 -103955915 + AluSx SINE Alu 1 303 -7 1208 150 29 34 chr1 138708458 138708501 -103955852 + AluJo SINE Alu 96 138 -174 2377 87 7 0 chr1 138708501 138708801 -103955552 + AluY SINE Alu 2 303 -8 1208 150 29 34 chr1 138708801 138708964 -103955389 + AluJo SINE Alu 138 301 -11 31 0 0 0 chr1 138709016 138709047 -103955306 + AT_rich Low_complexity Low_complexity 1 31 0 1155 139 56 37 chr1 138709298 138709513 -103954840 + MER20 DNA MER1_type 1 219 0 2381 100 0 0 chr1 138709764 138710075 -103954278 - AluSx SINE Alu -1 311 1 198 0 0 0 chr1 138710249 138710271 -103954082 + (A)n Simple_repeat Simple_repeat 1 22 0 2061 98 40 0 chr1 138710275 138710550 -103953803 - AluSx SINE Alu -22 290 5 1920 223 82 27 chr1 138710556 138711010 -103953343 - L1MC4 LINE L1 -250 7792 7365 1624 175 52 79 chr1 138711010 138711036 -103953317 + MLT1C LTR MaLR 1 26 -441 2500 57 0 3 chr1 138711036 138711337 -103953016 + AluY SINE Alu 1 300 -11 1624 175 52 79 chr1 138711337 138711502 -103952851 + MLT1C LTR MaLR 26 194 -273 2356 96 0 3 chr1 138711502 138711803 -103952550 + AluSx SINE Alu 1 300 -12 1624 175 52 79 chr1 138711803 138712090 -103952263 + MLT1C LTR MaLR 194 467 0 1920 223 82 27 chr1 138712090 138712160 -103952193 - L1MC4 LINE L1 -677 7365 7239 497 185 150 70 chr1 138712161 138712305 -103952048 - L1MC4 LINE L1 -758 7027 6865 2327 84 7 3 chr1 138712305 138712603 -103951750 - AluSq SINE Alu -5 308 10 497 185 150 70 chr1 138712603 138712675 -103951678 - L1MC4 LINE L1 -920 6865 6800 2236 108 3 0 chr1 138712677 138712972 -103951381 - AluSg SINE Alu -14 296 1 225 281 110 0 chr1 138713387 138713469 -103950884 - L1M4b LINE L1 -5453 1406 1316 1979 161 0 0 chr1 138714207 138714506 -103949847 + AluSx SINE Alu 1 299 -13 2655 140 45 51 chr1 138714634 138714863 -103949490 + L1MC3 LINE L1 7244 7473 -312 2384 90 0 0 chr1 138714863 138715162 -103949191 + AluSg SINE Alu 1 299 -11 2655 140 45 51 chr1 138715162 138715460 -103948893 + L1MC3 LINE L1 7473 7768 -17 1771 136 10 65 chr1 138715463 138715772 -103948581 - AluJb SINE Alu -20 292 1 303 241 108 0 chr1 138715842 138715925 -103948428 + L2 LINE L2 3222 3313 0 698 207 0 0 chr1 138716128 138716244 -103948109 + FLAM_C SINE Alu 2 117 -16 28 0 0 0 chr1 138716254 138716282 -103948071 + AT_rich Low_complexity Low_complexity 1 28 0 2267 111 0 0 chr1 138716284 138716581 -103947772 + AluSq SINE Alu 1 297 -16 2055 157 0 0 chr1 138716583 138716877 -103947476 + AluSx SINE Alu 1 294 -18 2082 115 7 0 chr1 138717430 138717709 -103946644 + AluSx SINE Alu 1 281 -31 997 144 32 132 chr1 138717730 138717814 -103946539 + MER33 DNA MER1_type 18 109 -2476 2006 150 3 0 chr1 138717814 138718108 -103946245 + AluJb SINE Alu 1 295 -17 997 144 32 132 chr1 138718108 138718270 -103946083 + MER33 DNA MER1_type 109 223 -2362 1954 131 3 32 chr1 138718270 138718584 -103945769 - AluSx SINE Alu -7 305 1 997 144 32 132 chr1 138718584 138718677 -103945676 + MER33 DNA MER1_type 223 324 0 1691 115 4 8 chr1 138719235 138719478 -103944875 - AluSq SINE Alu -14 299 58 2219 96 4 0 chr1 138720035 138720343 -103944010 - AluSx SINE Alu 0 309 1 1442 138 23 0 chr1 138720369 138720586 -103943767 - AluSp SINE Alu -13 300 79 658 173 60 0 chr1 138720718 138720851 -103943502 - L1MB4 LINE L1 0 6180 6040 741 139 9 0 chr1 138720851 138720959 -103943394 - MLT1A1 LTR MaLR -256 109 1 829 171 123 0 chr1 138720959 138721146 -103943207 - L1MB4 LINE L1 -150 6030 5821 262 238 0 32 chr1 138721146 138721209 -103943144 - AluJ/monomer SINE Alu 0 302 242 3510 165 50 35 chr1 138721228 138721561 -103942792 - L1MB3 LINE L1 -7 6176 5850 2367 108 0 0 chr1 138721561 138721868 -103942485 + AluSq SINE Alu 1 307 -6 3510 165 50 35 chr1 138721868 138722250 -103942103 - L1MB3 LINE L1 -333 5850 5450 2345 72 10 0 chr1 138722403 138722694 -103941659 - AluSp SINE Alu -19 294 1 1281 177 24 0 chr1 138722744 138722953 -103941400 - AluJb SINE Alu -98 214 1 335 289 134 37 chr1 138723071 138723317 -103941036 - L1MEd LINE L1 -5228 891 622 1546 153 0 0 chr1 138723724 138723947 -103940406 + AluJb SINE Alu 38 260 -52 1960 119 61 0 chr1 138723966 138724243 -103940110 + AluSp SINE Alu 1 294 -19 310 259 0 0 chr1 138724700 138724781 -103939572 + AluSc SINE Alu 137 217 -82 2444 50 40 10 chr1 138724862 138725159 -103939194 - AluSx SINE Alu -5 307 2 21 57 0 0 chr1 138725377 138725412 -103938941 + AT_rich Low_complexity Low_complexity 1 35 0 1913 161 0 0 chr1 138725540 138725820 -103938533 - AluJo SINE Alu -27 285 6 2393 106 0 0 chr1 138725839 138726151 -103938202 - AluSx SINE Alu 0 312 1 2226 121 0 16 chr1 138726162 138726477 -103937876 - AluSg SINE Alu 0 310 1 1133 138 18 28 chr1 138726478 138726696 -103937657 - L1MB3 LINE L1 -42 6141 5926 327 207 60 40 chr1 138726695 138726845 -103937508 - L1M4 LINE L1 -2970 3176 3024 * 657 248 64 45 chr1 138726845 138727047 -103937306 - MIR SINE MIR -55 207 2 1624 181 37 0 chr1 138727218 138727513 -103936840 - AluJb SINE Alu 0 305 1 223 198 0 81 chr1 138727576 138727662 -103936691 + MIR SINE MIR 120 198 -64 2443 89 3 0 chr1 138727676 138727980 -103936373 - AluSp SINE Alu -8 305 1 21 0 0 0 chr1 138728003 138728024 -103936329 + AT_rich Low_complexity Low_complexity 1 21 0 628 262 111 18 chr1 138728111 138728336 -103936017 - MIR SINE MIR -6 256 11 22 0 0 0 chr1 138728412 138728434 -103935919 + AT_rich Low_complexity Low_complexity 1 22 0 399 275 7 29 chr1 138728604 138728742 -103935611 + MIR3 SINE MIR 10 144 -64 2373 95 7 0 chr1 138728756 138729060 -103935293 + AluSg SINE Alu 1 306 -4 2399 87 3 0 chr1 138729250 138729549 -103934804 + AluSp SINE Alu 1 300 -13 971 181 48 0 chr1 138729553 138729719 -103934634 - MER46A DNA MER2_type -59 177 4 507 250 125 49 chr1 138730596 138730860 -103933493 + MER102a DNA MER1_type 32 315 -15 208 91 0 45 chr1 138730947 138730991 -103933362 + (TTTTTA)n Simple_repeat Simple_repeat 6 47 0 1877 88 46 15 chr1 138731001 138731149 -103933204 - AluY SINE Alu -28 283 122 204 40 0 0 chr1 138731149 138731174 -103933179 + (TG)n Simple_repeat Simple_repeat 2 26 0 1877 88 46 15 chr1 138731174 138731285 -103933068 - AluY SINE Alu -189 122 16 478 185 0 74 chr1 138731344 138731452 -103932901 - FRAM SINE Alu -19 157 58 2446 50 10 3 chr1 138731566 138731867 -103932486 - AluY SINE Alu -8 303 1 387 163 112 20 chr1 138731895 138731993 -103932360 + L1MC4 LINE L1 7795 7901 -141 315 307 48 38 chr1 138732077 138732393 -103931960 + L1MEd LINE L1 979 1297 -4908 900 167 48 43 chr1 138732406 138732592 -103931761 + MLT1B LTR MaLR 1 187 -203 220 175 32 16 chr1 138732600 138732663 -103931690 + GA-rich Low_complexity Low_complexity 2 65 0 498 198 135 68 chr1 138732676 138732928 -103931425 + L1MEd LINE L1 2103 2371 -4025 241 169 186 0 chr1 138732915 138732974 -103931379 + L1MEd LINE L1 3027 3096 -3119 * 813 153 7 36 chr1 138733072 138733209 -103931144 - FLAM_C SINE Alu 0 133 1 456 270 57 19 chr1 138733210 138733369 -103930984 + HAL1 LINE L1 1631 1795 -712 272 242 6 133 chr1 138733659 138733723 -103930630 + HAL1b LINE L1 746 817 -531 2136 136 0 3 chr1 138733723 138734031 -103930322 + AluSx SINE Alu 1 307 -5 272 242 6 133 chr1 138734031 138734131 -103930222 + HAL1b LINE L1 817 889 -459 534 243 67 7 chr1 138734205 138734393 -103929960 + HAL1b LINE L1 813 2398 -109 2428 87 3 0 chr1 138734558 138734857 -103929496 + AluSp SINE Alu 1 300 -13 868 92 125 0 chr1 138734936 138735056 -103929297 + AluSp SINE Alu 1 135 -178 2231 96 7 10 chr1 138735057 138735358 -103928995 + AluSp SINE Alu 1 300 -13 215 171 33 16 chr1 138735358 138735419 -103928934 + MIR SINE MIR 46 111 -107 486 139 12 12 chr1 138735423 138735509 -103928844 - AluJb SINE Alu -10 302 217 906 145 0 14 chr1 138735512 138735657 -103928696 - AluJb SINE Alu -164 148 6 25 0 0 0 chr1 138735997 138736022 -103928331 + AT_rich Low_complexity Low_complexity 1 25 0 2507 69 0 0 chr1 138736101 138736405 -103927948 - AluY SINE Alu -7 304 1 359 268 76 32 chr1 138736835 138736992 -103927361 + MIR SINE MIR 49 212 -50 1553 164 38 4 chr1 138737004 138737267 -103927086 - AluJo SINE Alu -20 292 21 490 266 24 0 chr1 138737344 138737468 -103926885 - L2 LINE L2 0 3313 3187 252 0 0 0 chr1 138738015 138738043 -103926310 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2501 42 3 45 chr1 138738156 138738468 -103925885 - AluY SINE Alu -12 299 1 234 268 49 12 chr1 138741467 138741549 -103922804 + L3 LINE CR1 635 719 -858 714 104 0 0 chr1 138741825 138741921 -103922432 + AluS SINE Alu 2 97 -215 382 140 0 0 chr1 138741924 138741981 -103922372 + AluS SINE Alu 40 96 -207 1111 225 75 0 chr1 138741981 138742221 -103922132 + AluJo SINE Alu 36 293 -19 610 164 0 52 chr1 138742698 138742814 -103921539 - AluJb SINE Alu -16 296 187 521 152 0 0 chr1 138742814 138742893 -103921460 + Tigger1 DNA MER2_type 2340 2418 0 860 159 67 15 chr1 138742975 138743059 -103921294 + Tigger3(Golem) DNA MER2_type 2697 2775 -263 2319 93 0 0 chr1 138743059 138743349 -103921004 + AluSc SINE Alu 1 290 -19 860 159 67 15 chr1 138743349 138743495 -103920858 + Tigger3(Golem) DNA MER2_type 2775 2955 -83 2229 71 4 11 chr1 138943515 138943795 -103720558 - AluSp SINE Alu -35 278 1 230 383 37 0 chr1 138944622 138944729 -103719624 - L2 LINE L2 -19 3294 3184 186 43 0 0 chr1 138944768 138944791 -103719562 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 1336 107 6 0 chr1 138944912 138945089 -103719264 - AluSg/x SINE Alu -1 309 132 2382 67 14 0 chr1 138945089 138945373 -103718980 - AluSg SINE Alu -22 288 1 2369 88 0 3 chr1 138945375 138945672 -103718681 - AluSq SINE Alu -17 296 1 1826 138 72 3 chr1 138946336 138946626 -103717727 + AluJo SINE Alu 1 310 -2 2632 52 3 0 chr1 138946637 138946944 -103717409 + AluY SINE Alu 1 308 -3 2099 130 14 0 chr1 138946944 138947075 -103717278 + AluSx SINE Alu 1 129 -183 2507 77 3 0 chr1 138947075 138947386 -103716967 + AluSx SINE Alu 1 312 0 2099 130 14 0 chr1 138947386 138947547 -103716806 + AluSx SINE Alu 129 297 -15 2312 122 3 3 chr1 138947604 138947916 -103716437 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 138948013 138948034 -103716319 + AT_rich Low_complexity Low_complexity 1 21 0 1779 174 17 3 chr1 138948102 138948396 -103715957 + AluJo SINE Alu 1 298 -14 2245 95 14 0 chr1 138948397 138948710 -103715643 + AluSq SINE Alu 1 317 0 2042 112 0 31 chr1 138948712 138949050 -103715303 + AluSq SINE Alu 1 329 0 795 150 0 15 chr1 138949062 138949195 -103715158 + FLAM_C SINE Alu 3 133 0 1081 117 85 0 chr1 138949566 138949754 -103714599 - MER46A DNA MER2_type 0 236 33 1985 121 6 84 chr1 138950166 138950353 -103714000 - AluSx SINE Alu -14 298 145 2401 75 0 0 chr1 138950353 138950633 -103713720 - AluSg SINE Alu -30 280 1 1985 121 6 84 chr1 138950633 138950768 -103713585 - AluSx SINE Alu -167 145 1 1276 168 148 17 chr1 138950901 138951199 -103713154 - MER2 DNA MER2_type 0 345 9 228 253 32 63 chr1 138951115 138951210 -103713143 + Tigger7 DNA MER2_type 2496 2587 0 * 213 94 0 0 chr1 138955958 138955990 -103708363 + (T)n Simple_repeat Simple_repeat 1 32 0 288 282 58 19 chr1 138956902 138957005 -103707348 - MIR SINE MIR -155 107 1 859 136 0 0 chr1 138958155 138958287 -103706066 - FLAM_C SINE Alu -1 132 1 2179 138 32 5 chr1 138958472 138958872 -103705481 - L1MA4 LINE L1 -2 6298 5888 2395 88 0 3 chr1 138959611 138959905 -103704448 + AluSx SINE Alu 1 293 -19 2352 109 3 3 chr1 138960067 138960371 -103703982 - AluSx SINE Alu -8 304 1 937 175 6 6 chr1 138960876 138961036 -103703317 + AluJb SINE Alu 152 311 -1 1304 101 0 0 chr1 138961745 138961913 -103702440 - AluSg/x SINE Alu -10 300 133 2385 103 3 0 chr1 138961914 138962216 -103702137 - AluSg SINE Alu -7 303 1 2379 110 0 0 chr1 138962609 138962908 -103701445 + AluSg SINE Alu 1 299 -11 2017 112 50 0 chr1 138962970 138963248 -103701105 - AluSg SINE Alu -18 292 1 2428 93 3 0 chr1 138963557 138963857 -103700496 + AluSp SINE Alu 7 307 -6 608 134 124 0 chr1 138963956 138964053 -103700300 + AluSg SINE Alu 3 111 -199 196 182 254 0 chr1 138964059 138964114 -103700239 + MIR SINE MIR 85 153 -109 1721 168 0 21 chr1 138964163 138964454 -103699899 + AluSx SINE Alu 1 285 -27 244 277 69 30 chr1 138965319 138965420 -103698933 + MIR SINE MIR 126 230 -32 285 98 0 0 chr1 138966657 138966698 -103697655 + (CA)n Simple_repeat Simple_repeat 2 42 0 297 0 0 0 chr1 138966756 138966789 -103697564 + (CA)n Simple_repeat Simple_repeat 2 34 0 2233 86 7 4 chr1 138967469 138967774 -103696579 + AluSg SINE Alu 1 306 0 479 205 103 8 chr1 138970447 138970564 -103693789 + MIR SINE MIR 63 190 -72 1723 79 0 9 chr1 138974155 138974369 -103689984 - AluSg/x SINE Alu -14 296 85 338 70 0 0 chr1 138974369 138974412 -103689941 - Alu SINE Alu -258 43 1 256 234 106 11 chr1 138974418 138974512 -103689841 - L2 LINE L2 -18 3254 3152 1882 122 44 0 chr1 138974877 138975170 -103689183 + AluSx SINE Alu 1 305 0 330 149 205 0 chr1 138975184 138975287 -103689066 + AluJ/FRAM SINE Alu 227 298 -4 2180 55 24 34 chr1 138976146 138976439 -103687914 + AluSg1 SINE Alu 1 290 -19 2338 97 7 0 chr1 138977198 138977498 -103686855 + AluSx SINE Alu 1 302 -10 1708 168 46 6 chr1 138977621 138977972 -103686381 + MLT1A1 LTR MaLR 1 365 0 221 89 22 44 chr1 138977991 138978036 -103686317 - L2 LINE L2 -926 2388 2345 204 235 59 0 chr1 138978201 138978252 -103686101 + L2 LINE L2 2309 2362 -952 310 204 11 86 chr1 138978292 138978385 -103685968 + L1MC5 LINE L1 7845 7930 -31 186 340 31 31 chr1 138978399 138978496 -103685857 + L2 LINE L2 2365 2461 -853 2211 113 0 10 chr1 138978568 138978868 -103685485 - AluSp SINE Alu -15 298 2 2332 96 3 0 chr1 138979091 138979382 -103684971 - AluSg SINE Alu -18 292 1 2445 59 0 3 chr1 138979397 138979708 -103684645 - AluY SINE Alu 0 310 1 2062 120 7 13 chr1 138980689 138980988 -103683365 + AluSx SINE Alu 1 297 -15 2455 72 0 7 chr1 138981498 138981802 -103682551 + AluY SINE Alu 1 302 -9 288 326 22 11 chr1 138981819 138981911 -103682442 + MIR SINE MIR 40 132 -76 2275 96 7 7 chr1 138983059 138983351 -103681002 - AluSx SINE Alu -20 292 1 207 321 133 50 chr1 138983389 138983629 -103680724 - L2 LINE L2 -81 3191 2932 1274 164 0 27 chr1 138983655 138983874 -103680479 + AluJb SINE Alu 82 294 -18 188 286 181 9 chr1 138983883 138983988 -103680365 - L2 LINE L2 -1367 1947 1825 2003 121 24 10 chr1 138983999 138984288 -103680065 + AluSx SINE Alu 7 299 -13 815 80 204 0 chr1 138984290 138984403 -103679950 + AluSq/x SINE Alu 1 136 -177 1017 130 0 13 chr1 138984507 138984661 -103679692 + AluSp/q SINE Alu 158 309 -4 468 107 24 0 chr1 138984899 138984983 -103679370 - L1MB8 LINE L1 0 6178 6093 1068 70 8 0 chr1 138985025 138985153 -103679200 + AluSp SINE Alu 9 137 -176 2123 71 54 37 chr1 138985153 138985448 -103678905 + AluSq SINE Alu 1 300 -13 2243 101 14 3 chr1 138985454 138985750 -103678603 + AluSp SINE Alu 6 304 -9 2464 123 24 46 chr1 138985756 138986212 -103678141 - L1MB4 LINE L1 -28 6152 5707 1503 238 128 48 chr1 138986220 138986359 -103677994 - L1ME3A LINE L1 -219 5951 5825 2199 91 28 50 chr1 138986359 138986679 -103677674 - AluSp SINE Alu 0 313 1 1503 238 128 48 chr1 138986679 138987149 -103677204 - L1ME3A LINE L1 -345 5825 5293 793 267 93 12 chr1 138987123 138987467 -103676886 - L1ME3A LINE L1 -1101 5045 4674 * 2286 110 7 7 chr1 138987543 138987852 -103676501 + AluSx SINE Alu 3 311 -1 2198 119 7 0 chr1 138987919 138988221 -103676132 + AluSx SINE Alu 1 304 -8 700 160 29 0 chr1 138988228 138988356 -103675997 + MER33 DNA MER1_type 3 181 -182 2211 75 71 0 chr1 138988508 138988790 -103675563 - AluSx SINE Alu -10 302 1 2277 81 44 3 chr1 138989139 138989512 -103674841 - AluSq SINE Alu 0 385 1 2216 126 10 0 chr1 138989514 138989824 -103674529 - AluSp SINE Alu 0 313 1 2486 76 0 10 chr1 138989824 138990124 -103674229 - AluSc SINE Alu -11 298 1 2224 86 41 7 chr1 138990124 138990414 -103673939 - AluSq SINE Alu -13 300 1 2209 126 10 0 chr1 138990415 138990724 -103673629 - AluSp SINE Alu -1 312 1 2481 85 0 10 chr1 138990724 138991028 -103673325 - AluSc SINE Alu -7 302 1 2266 121 0 7 chr1 138991028 138991333 -103673020 - AluSq SINE Alu -10 303 1 2277 98 16 3 chr1 138991450 138991756 -103672597 - AluSx SINE Alu -2 310 1 436 197 0 16 chr1 138991762 138991884 -103672469 + CT-rich Low_complexity Low_complexity 3 122 0 2062 129 31 0 chr1 138991812 138992200 -103672153 - AluSx SINE Alu 0 397 1 1992 155 13 7 chr1 138992210 138992520 -103671833 - AluJo SINE Alu 0 312 1 956 88 0 36 chr1 138993601 138993738 -103670615 - AluSg/x SINE Alu -6 304 173 880 184 25 0 chr1 138994096 138994254 -103670099 - FRAM SINE Alu -4 162 1 1429 193 19 8 chr1 138994868 138995132 -103669221 - AluJb SINE Alu -45 267 1 407 289 116 8 chr1 138995134 138995255 -103669098 - MIR3 SINE MIR -32 176 43 263 242 168 0 chr1 138995400 138995495 -103668858 + L2 LINE L2 2934 3044 -228 308 245 21 43 chr1 138995969 138996063 -103668290 + MIR SINE MIR 168 259 -3 2302 102 0 0 chr1 138996100 138996395 -103667958 + AluSx SINE Alu 3 297 -15 2416 87 0 0 chr1 138996782 138997080 -103667273 - AluSc SINE Alu -11 298 1 2409 101 0 3 chr1 138997905 138998211 -103666142 + AluSx SINE Alu 1 305 -7 704 269 120 46 chr1 138998465 138999001 -103665352 + L2 LINE L2 2738 3312 -1 2399 171 79 52 chr1 138999394 138999435 -103664918 - MER89 LTR ERV1 0 559 521 2307 51 0 11 chr1 138999435 138999709 -103664644 + AluY SINE Alu 1 271 -40 2399 171 79 52 chr1 138999709 139000152 -103664201 - MER89 LTR ERV1 -38 521 56 2178 72 72 0 chr1 139000152 139000429 -103663924 - AluSp SINE Alu -16 297 1 2399 171 79 52 chr1 139000429 139000487 -103663866 - MER89 LTR ERV1 -503 56 1 452 232 80 0 chr1 139001131 139001243 -103663110 - MIR SINE MIR -77 185 65 543 207 90 28 chr1 139001356 139001501 -103662852 - MIR SINE MIR -21 241 88 2571 51 0 0 chr1 139001745 139002041 -103662312 + AluY SINE Alu 1 296 -15 236 400 51 20 chr1 139002284 139002479 -103661874 + L2 LINE L2 1129 1329 -1985 207 0 0 0 chr1 139002602 139002625 -103661728 + (T)n Simple_repeat Simple_repeat 1 23 0 357 301 145 34 chr1 139002627 139002756 -103661597 - L2 LINE L2 -18 3295 3182 2430 70 0 20 chr1 139002756 139003058 -103661295 + AluY SINE Alu 2 297 -14 357 301 145 34 chr1 139003058 139003190 -103661163 - L2 LINE L2 -131 3182 3005 274 286 89 9 chr1 139003195 139003307 -103661046 - MLT1L LTR MaLR -2 613 493 510 323 44 16 chr1 139003365 139003616 -103660737 - MLT1L LTR MaLR -221 394 137 204 40 0 0 chr1 139003758 139003783 -103660570 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1528 111 0 49 chr1 139003786 139004012 -103660341 - AluSg/x SINE Alu -24 288 74 2176 116 0 0 chr1 139004083 139004397 -103659956 + AluSx SINE Alu 1 314 0 2177 106 0 17 chr1 139004401 139004702 -103659651 + AluSx SINE Alu 1 296 -16 2464 75 0 28 chr1 139004708 139005028 -103659325 + AluY SINE Alu 1 311 0 571 97 0 0 chr1 139005028 139005100 -103659253 + AluSc SINE Alu 124 195 -114 810 157 0 15 chr1 139005143 139005271 -103659082 + AluJo/FLAM SINE Alu 2 128 -169 2319 80 42 0 chr1 139005271 139005560 -103658793 - AluY SINE Alu -10 301 1 644 156 8 0 chr1 139005576 139005698 -103658655 + L1MB7 LINE L1 5814 5936 -248 1314 164 51 5 chr1 139005699 139005913 -103658440 + AluJo SINE Alu 1 224 -88 284 291 0 0 chr1 139005956 139006035 -103658318 + AluJo SINE Alu 224 302 0 857 154 67 7 chr1 139006160 139006332 -103658021 - AluJb SINE Alu 0 308 128 2201 99 27 0 chr1 139006334 139006626 -103657727 - AluSg SINE Alu -10 300 1 1601 154 79 8 chr1 139006626 139006892 -103657461 - AluJo SINE Alu -10 302 18 960 173 45 14 chr1 139006905 139007125 -103657228 - L1M4 LINE L1 -702 5482 5256 21 0 0 0 chr1 139007295 139007316 -103657037 + AT_rich Low_complexity Low_complexity 1 21 0 743 246 0 29 chr1 139007324 139007495 -103656858 + FRAM SINE Alu 1 166 0 791 228 44 23 chr1 139007504 139007920 -103656433 - MLT1D LTR MaLR -36 469 1 2338 87 10 3 chr1 139007970 139008269 -103656084 - AluSx SINE Alu -11 301 1 328 88 50 12 chr1 139008269 139008349 -103656004 - Charlie5 DNA MER1_type -17 2595 2513 943 120 0 0 chr1 139008349 139008474 -103655879 + AluSq/x SINE Alu 2 126 -186 2265 104 3 0 chr1 139008703 139009000 -103655353 - AluSg SINE Alu -12 298 1 1127 90 0 0 chr1 139009000 139009134 -103655219 - AluSg1 SINE Alu -175 134 1 2298 112 3 3 chr1 139009266 139009578 -103654775 + AluSq SINE Alu 1 312 -1 955 206 132 8 chr1 139009590 139009847 -103654506 - AluJb SINE Alu -13 289 1 406 299 62 96 chr1 139009936 139010119 -103654234 - L2 LINE L2 -563 2751 2563 2250 91 44 0 chr1 139010119 139010415 -103653938 + AluSg SINE Alu 1 309 -1 406 299 62 96 chr1 139010415 139010541 -103653812 - L2 LINE L2 -751 2563 2434 2416 91 0 3 chr1 139010541 139010837 -103653516 + AluSp SINE Alu 1 295 -18 406 299 62 96 chr1 139010837 139010889 -103653464 - L2 LINE L2 -880 2434 2382 1165 181 111 62 chr1 139010889 139011063 -103653290 - AluJo SINE Alu 0 302 107 2075 113 34 0 chr1 139011063 139011356 -103652997 - AluSx SINE Alu -9 303 1 1165 181 111 62 chr1 139011356 139011469 -103652884 - AluJo SINE Alu -195 107 1 406 299 62 96 chr1 139011469 139011670 -103652683 - L2 LINE L2 -932 2382 2206 223 233 0 0 chr1 139011678 139011721 -103652632 - L2 LINE L2 -11 3261 3219 2907 13 0 0 chr1 139011785 139012096 -103652257 + AluYb8 SINE Alu 1 311 -7 2292 104 0 22 chr1 139012105 139012422 -103651931 + AluSg SINE Alu 1 310 0 2251 114 13 0 chr1 139012444 139012750 -103651603 + AluSp SINE Alu 1 310 -3 644 266 81 5 chr1 139012943 139013165 -103651188 + MIR SINE MIR 10 248 -14 2241 116 0 3 chr1 139013170 139013471 -103650882 - AluSg SINE Alu -10 300 1 1571 175 0 56 chr1 139013482 139013785 -103650568 - AluJo SINE Alu -22 290 5 189 300 123 41 chr1 139013789 139013959 -103650394 - MIR SINE MIR -64 198 15 182 232 39 144 chr1 139013872 139014053 -103650300 - L2 LINE L2 -1067 2247 2086 * 881 127 82 13 chr1 139014068 139014226 -103650127 - MLT1B LTR MaLR -1 389 221 2477 92 0 0 chr1 139014233 139014538 -103649815 - AluSq SINE Alu -8 305 1 624 107 0 91 chr1 139014541 139014662 -103649691 - MLT1B LTR MaLR -280 110 1 344 216 10 82 chr1 139014703 139014800 -103649553 - L1MC4 LINE L1 -1338 6704 6615 2179 113 7 0 chr1 139014821 139015112 -103649241 - AluSg SINE Alu -17 293 1 225 0 0 0 chr1 139015114 139015139 -103649214 + (T)n Simple_repeat Simple_repeat 1 25 0 2213 116 0 3 chr1 139015251 139015552 -103648801 - AluSx SINE Alu -11 301 2 590 230 29 166 chr1 139015552 139015886 -103648467 - L1MEd LINE L1 -5287 832 454 2080 114 4 0 chr1 139015886 139016167 -103648186 + AluSx SINE Alu 1 282 -30 336 102 0 0 chr1 139016167 139016216 -103648137 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 590 230 29 166 chr1 139016216 139016410 -103647943 - L1MEd LINE L1 -5664 455 381 2561 74 0 0 chr1 139016410 139016720 -103647633 - AluY SINE Alu -1 310 1 590 230 29 166 chr1 139016720 139016749 -103647604 - L1MEd LINE L1 -5738 381 350 2200 119 3 0 chr1 139016885 139017188 -103647165 - AluSx SINE Alu -8 304 1 1860 139 11 68 chr1 139017188 139017541 -103646812 - MER1B DNA MER1_type -6 333 1 2472 74 0 7 chr1 139017753 139018062 -103646291 + AluY SINE Alu 1 307 -4 2575 74 3 0 chr1 139018068 139018380 -103645973 + AluSp SINE Alu 1 313 0 2433 82 0 0 chr1 139018386 139018679 -103645674 + AluSc SINE Alu 1 293 -16 1647 189 23 10 chr1 139018977 139019339 -103645014 + AluJb SINE Alu 1 366 0 1869 114 34 0 chr1 139019339 139019601 -103644752 + AluSx SINE Alu 33 303 -9 432 15 59 15 chr1 139019605 139019673 -103644680 + (AGGGGG)n Simple_repeat Simple_repeat 3 73 0 1115 147 156 30 chr1 139019676 139019907 -103644446 + AluSg1 SINE Alu 1 260 -49 341 257 0 14 chr1 139020196 139020270 -103644083 + L2 LINE L2 3241 3313 0 212 405 26 11 chr1 139020267 139020457 -103643896 - L2 LINE L2 -2167 1147 955 * 2328 99 3 0 chr1 139020634 139020928 -103643425 + AluSp SINE Alu 1 295 -18 517 261 97 100 chr1 139021057 139021308 -103643045 + L3 LINE CR1 543 794 -783 839 195 53 18 chr1 139021308 139021477 -103642876 - FAM SINE Alu 0 175 1 517 261 97 100 chr1 139021477 139021535 -103642818 + L3 LINE CR1 794 851 -726 2419 73 3 0 chr1 139021538 139021852 -103642501 + AluSp SINE Alu 1 313 0 435 208 0 0 chr1 139021858 139021930 -103642423 + AluJ/FLAM SINE Alu 5 76 -236 806 129 0 0 chr1 139021930 139022046 -103642307 - AluSg/x SINE Alu -9 303 188 820 196 0 14 chr1 139022067 139022210 -103642143 + FRAM SINE Alu 16 156 -20 222 300 0 14 chr1 139022273 139022343 -103642010 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 2111 134 0 10 chr1 139022388 139022687 -103641666 + AluSx SINE Alu 1 296 -16 2469 39 3 7 chr1 139022689 139023015 -103641338 + AluY SINE Alu 1 325 0 2192 111 0 0 chr1 139023166 139023482 -103640871 - AluSc SINE Alu 0 316 1 1296 180 67 35 chr1 139024055 139024338 -103640015 - AluJo SINE Alu -20 292 1 1939 101 6 104 chr1 139024476 139024803 -103639550 + AluSg SINE Alu 2 296 -14 2233 110 3 7 chr1 139024855 139025155 -103639198 + AluSq SINE Alu 1 299 -14 486 96 29 0 chr1 139025158 139025262 -103639091 + (TA)n Simple_repeat Simple_repeat 1 107 0 604 247 62 62 chr1 139025262 139025519 -103638834 + L1ME4a LINE L1 5645 5901 -220 1433 206 27 7 chr1 139025519 139025815 -103638538 - AluJb SINE Alu -8 304 3 604 247 62 62 chr1 139025815 139025846 -103638507 + L1ME4a LINE L1 5901 5931 -190 1931 156 10 7 chr1 139025846 139026141 -103638212 + AluJb SINE Alu 1 296 -16 604 247 62 62 chr1 139026141 139026223 -103638130 + L1ME4a LINE L1 5930 6016 -105 1512 155 16 65 chr1 139026272 139026595 -103637758 - AluSx SINE Alu -5 307 1 195 42 0 0 chr1 139026595 139026619 -103637734 + (T)n Simple_repeat Simple_repeat 1 24 0 688 0 0 0 chr1 139026621 139026704 -103637649 - L1HS LINE L1 -1 6154 6072 2065 143 13 3 chr1 139026711 139027019 -103637334 - AluSx SINE Alu -1 311 1 643 200 9 17 chr1 139027157 139027272 -103637081 - FLAM_A SINE Alu -19 114 1 455 331 169 10 chr1 139027281 139027595 -103636758 + L3 LINE CR1 931 1294 -283 324 240 25 91 chr1 139027600 139027686 -103636667 + L3 LINE CR1 1444 1521 -56 817 154 15 0 chr1 139027686 139027816 -103636537 - FLAM_C SINE Alu -1 132 1 324 240 25 91 chr1 139027816 139027850 -103636503 + L3 LINE CR1 1521 1556 -21 2190 97 0 27 chr1 139028923 139029222 -103635131 - AluSq SINE Alu -22 291 1 1914 142 19 35 chr1 139029314 139029495 -103634858 - AluJo SINE Alu 0 312 130 2180 105 3 20 chr1 139029495 139029799 -103634554 - AluSx SINE Alu -13 299 1 2411 82 0 22 chr1 139029799 139030114 -103634239 - AluSc SINE Alu 0 309 1 1914 142 19 35 chr1 139030114 139030248 -103634105 - AluJo SINE Alu -180 132 1 1940 153 10 7 chr1 139030798 139031098 -103633255 + AluSx SINE Alu 1 301 -11 2141 127 10 3 chr1 139031129 139031428 -103632925 - AluSq SINE Alu -12 301 1 22 0 0 0 chr1 139031430 139031452 -103632901 + AT_rich Low_complexity Low_complexity 1 22 0 787 118 0 148 chr1 139031454 139031528 -103632825 - U4 snRNA snRNA -1 144 61 1472 166 136 4 chr1 139031528 139031793 -103632560 - AluJb SINE Alu -2 300 1 787 118 0 148 chr1 139031793 139031804 -103632549 - U4 snRNA snRNA -84 61 50 2199 103 6 45 chr1 139031804 139032115 -103632238 - AluSx SINE Alu -13 299 1 2144 84 21 7 chr1 139032121 139032405 -103631948 - AluY SINE Alu -23 288 1 787 118 0 148 chr1 139032405 139032480 -103631873 - U4 snRNA snRNA -100 45 1 2400 61 0 10 chr1 139032489 139032784 -103631569 - AluY SINE Alu -19 292 1 28 48 0 0 chr1 139032784 139032826 -103631527 + AT_rich Low_complexity Low_complexity 1 42 0 2313 102 3 0 chr1 139032920 139033214 -103631139 - AluSc SINE Alu -12 297 3 779 176 8 0 chr1 139033980 139034111 -103630242 - FLAM_A SINE Alu -1 132 1 2316 92 0 3 chr1 139034167 139034459 -103629894 - AluSx SINE Alu -21 291 1 1723 151 38 14 chr1 139034504 139034796 -103629557 - AluJb SINE Alu -13 299 1 2311 121 0 6 chr1 139034823 139035136 -103629217 - AluSx SINE Alu -1 311 1 264 232 36 0 chr1 139035150 139035206 -103629147 - MIR SINE MIR -105 157 100 1690 193 7 0 chr1 139035684 139035980 -103628373 - AluJo SINE Alu -14 298 1 2301 61 4 4 chr1 139036272 139036549 -103627804 - AluY SINE Alu -11 300 24 926 169 133 31 chr1 139036572 139036767 -103627586 + MER20 DNA MER1_type 2 216 -3 2041 106 67 3 chr1 139036853 139037136 -103627217 + AluSq SINE Alu 1 301 -12 371 302 52 9 chr1 139037341 139037457 -103626896 + MIR3 SINE MIR 81 201 -7 1649 170 21 7 chr1 139037842 139038131 -103626222 - AluJo SINE Alu -15 297 5 1683 149 32 11 chr1 139038220 139038501 -103625852 - AluJo SINE Alu -17 295 9 1616 161 19 19 chr1 139038665 139038976 -103625377 - AluSq SINE Alu 0 313 3 1544 173 24 10 chr1 139039316 139039605 -103624748 - AluJo SINE Alu -15 297 5 1683 149 32 11 chr1 139039694 139039975 -103624378 - AluJo SINE Alu -17 295 9 2385 89 3 19 chr1 139040139 139040454 -103623899 - AluSg SINE Alu 0 310 1 1452 171 38 45 chr1 139040747 139041039 -103623314 - AluJo SINE Alu -22 290 1 248 262 0 0 chr1 139041278 139041339 -103623014 + L2 LINE L2 3203 3263 -9 2233 99 3 7 chr1 139041642 139041935 -103622418 - AluSq SINE Alu -21 292 1 1144 119 6 0 chr1 139042132 139042291 -103622062 - AluSg/x SINE Alu -17 295 136 229 307 56 65 chr1 139042376 139042650 -103621703 + L2 LINE L2 2948 3220 -93 2218 117 3 0 chr1 139042650 139042948 -103621405 - AluSq SINE Alu -14 299 1 229 307 56 65 chr1 139042948 139042979 -103621374 + L2 LINE L2 3220 3250 -63 373 270 40 8 chr1 139042984 139043110 -103621243 - MIR SINE MIR -49 213 84 1634 108 0 5 chr1 139043132 139043354 -103620999 - AluSq SINE Alu -17 296 76 * 2059 38 8 0 chr1 139043353 139043588 -103620765 - AluY SINE Alu -12 299 63 507 98 49 78 chr1 139043592 139043694 -103620659 + FRAM SINE Alu 72 170 -6 2132 127 0 0 chr1 139043694 139044014 -103620339 + AluSx SINE Alu 1 320 0 2282 111 0 0 chr1 139044020 139044318 -103620035 + AluSq SINE Alu 1 298 -15 1937 134 34 0 chr1 139044324 139044616 -103619737 + AluSx SINE Alu 1 302 -10 202 261 55 41 chr1 139045880 139045987 -103618366 + MIR SINE MIR 46 157 -51 693 197 16 0 chr1 139045990 139046112 -103618241 + FLAM_C SINE Alu 2 125 -18 1787 169 36 3 chr1 139046132 139046434 -103617919 + AluJb SINE Alu 1 312 0 2333 105 0 7 chr1 139046597 139046903 -103617450 - AluSx SINE Alu -5 307 4 31 0 0 0 chr1 139048953 139048984 -103615369 + AT_rich Low_complexity Low_complexity 1 31 0 423 275 65 31 chr1 139050127 139050300 -103614053 - MIR3 SINE MIR -21 187 6 21 0 0 31 chr1 139051884 139051896 -103612457 + AT_rich Low_complexity Low_complexity 1 12 -19 2284 54 43 0 chr1 139051896 139052174 -103612179 - AluY SINE Alu -21 290 1 21 0 0 31 chr1 139052174 139052193 -103612160 + AT_rich Low_complexity Low_complexity 12 31 0 836 149 22 0 chr1 139053345 139053479 -103610874 + AluJb SINE Alu 1 137 -175 2417 81 0 0 chr1 139055354 139055652 -103608701 + AluSx SINE Alu 1 298 -14 239 277 69 30 chr1 139055899 139056000 -103608353 - L2 LINE L2 -16 3256 3152 1067 83 0 0 chr1 139056001 139056133 -103608220 + AluSq/x SINE Alu 1 132 -180 2133 96 7 20 chr1 139056136 139056438 -103607915 + AluSc SINE Alu 1 298 -11 2233 94 37 0 chr1 139056805 139057102 -103607251 - AluSx SINE Alu -4 308 1 181 310 52 0 chr1 139057158 139057216 -103607137 + L3 LINE CR1 1515 1575 -2 233 329 157 12 chr1 139057216 139057354 -103606999 - L2 LINE L2 -1026 2288 2171 919 181 18 18 chr1 139057354 139057520 -103606833 + FRAM SINE Alu 1 166 0 233 329 157 12 chr1 139057520 139057630 -103606723 - L2 LINE L2 -1143 2171 2004 326 114 0 0 chr1 139057845 139057889 -103606464 + Alu SINE Alu 1 44 -264 823 97 0 18 chr1 139058025 139058138 -103606215 - AluSp/q SINE Alu -22 291 181 580 89 0 0 chr1 139058138 139058217 -103606136 + LTR5 LTR ERVK 1 79 -890 14836 41 4 0 chr1 139058245 139059993 -103604360 - HERVK LTR ERVK -1710 5533 3779 2173 77 4 0 chr1 139059980 139060254 -103604099 + HERVK LTR ERVK 6969 7243 0 * 6739 108 17 9 chr1 139060254 139061216 -103603137 + LTR5 LTR ERVK 1 969 0 1429 113 0 0 chr1 139061216 139061402 -103602951 - AluSx SINE Alu -126 186 1 988 66 49 0 chr1 139061553 139061675 -103602678 - AluSq/x SINE Alu -177 136 9 1348 282 125 18 chr1 139061684 139062324 -103602029 - L2 LINE L2 -247 3066 2339 329 74 148 0 chr1 139062359 139062413 -103601940 + L1M4 LINE L1 5747 5808 -376 329 202 0 0 chr1 139062415 139062481 -103601872 + AluJ/monomer SINE Alu 1 53 -249 2060 86 0 0 chr1 139062481 139062737 -103601616 - AluSq SINE Alu -57 256 1 325 97 0 48 chr1 139062743 139062805 -103601548 + L1MB8 LINE L1 6119 6177 -1 674 216 53 86 chr1 139063443 139063581 -103600772 + L1ME3A LINE L1 5534 5675 -495 1518 115 46 59 chr1 139063581 139063714 -103600639 + L1MA3 LINE L1 6006 6139 -166 2168 128 0 0 chr1 139063714 139064004 -103600349 + AluSq SINE Alu 1 290 -23 1518 115 46 59 chr1 139064004 139064174 -103600179 + L1MA3 LINE L1 6139 6305 0 2410 75 3 10 chr1 139064179 139064487 -103599866 + AluSp SINE Alu 3 308 -5 674 216 53 86 chr1 139064487 139064587 -103599766 + L1ME3A LINE L1 5679 5770 -400 823 215 58 16 chr1 139064595 139064786 -103599567 + L1ME3A LINE L1 5891 6089 -81 804 146 0 31 chr1 139064790 139064920 -103599433 - FLAM_C SINE Alu -17 126 1 484 130 170 0 chr1 139064948 139065048 -103599305 + FLAM_C SINE Alu 1 117 -16 1818 58 0 0 chr1 139065069 139065322 -103599031 + AluY SINE Alu 76 328 0 2342 81 0 35 chr1 139065326 139065499 -103598854 + AluSp SINE Alu 1 160 -153 1277 148 153 68 chr1 139065499 139065912 -103598441 + LTR7 LTR ERV1 1 448 -2 2342 81 0 35 chr1 139065912 139066048 -103598305 + AluSp SINE Alu 160 299 -14 933 190 12 0 chr1 139066051 139066214 -103598139 + FRAM SINE Alu 1 165 -11 735 128 54 4 chr1 139066254 139066455 -103597898 + AluSx SINE Alu 2 298 -14 2818 78 92 5 chr1 139066706 139067118 -103597235 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr1 139067147 139067168 -103597185 + AT_rich Low_complexity Low_complexity 1 21 0 839 133 0 22 chr1 139067753 139067888 -103596465 + FLAM_C SINE Alu 2 133 0 315 122 61 85 chr1 139068219 139068301 -103596052 + L1MCa LINE L1 1547 1626 -4800 759 148 16 8 chr1 139068308 139068436 -103595917 - FLAM_C SINE Alu -13 130 2 883 157 81 43 chr1 139068436 139068590 -103595763 + L1MCa LINE L1 1704 1870 -4556 1921 137 31 0 chr1 139068590 139068883 -103595470 - AluSq SINE Alu -11 302 1 883 157 81 43 chr1 139068883 139068938 -103595415 + L1MCa LINE L1 1870 1921 -4505 1021 138 0 0 chr1 139068970 139069122 -103595231 + FAM SINE Alu 14 165 -20 2218 82 50 4 chr1 139069184 139069464 -103594889 + AluSq SINE Alu 1 293 -20 783 124 16 47 chr1 139069613 139069742 -103594611 - FLAM_C SINE Alu -8 125 1 2342 110 0 0 chr1 139069851 139070152 -103594201 - AluSx SINE Alu -11 301 1 180 257 81 27 chr1 139070201 139070275 -103594078 + MIR SINE MIR 173 250 -12 209 299 13 0 chr1 139070442 139070519 -103593834 + L2 LINE L2 3232 3309 -4 2446 75 3 0 chr1 139070576 139070870 -103593483 - AluSx SINE Alu -17 295 1 1816 151 20 0 chr1 139072549 139072841 -103591512 + AluJo SINE Alu 5 302 -10 1747 252 62 68 chr1 139074404 139074999 -103589354 + L1M4b LINE L1 378 1224 -5635 1017 164 55 0 chr1 139075164 139075347 -103589006 + AluSg/x SINE Alu 118 310 0 2233 222 79 48 chr1 139075639 139075773 -103588580 + L1M4b LINE L1 1192 1320 -5639 1699 167 62 19 chr1 139075773 139076096 -103588257 + MER1B DNA MER1_type 1 337 0 2233 222 79 48 chr1 139076096 139076365 -103587988 + L1M4b LINE L1 1320 1579 -5380 2194 117 13 0 chr1 139076365 139076664 -103587689 + AluSx SINE Alu 1 303 -9 2233 222 79 48 chr1 139076664 139076698 -103587655 + L1M4b LINE L1 1579 1610 -5349 2254 111 24 0 chr1 139076698 139076995 -103587358 + AluSx SINE Alu 1 304 -8 2233 222 79 48 chr1 139076995 139077562 -103586791 + L1M4b LINE L1 1610 2228 -4731 1302 116 0 0 chr1 139077567 139077739 -103586614 + AluSg/x SINE Alu 137 308 -2 367 265 100 65 chr1 139077779 139077979 -103586374 + L1M4b LINE L1 2215 2421 -4538 356 289 96 5 chr1 139078148 139078335 -103586018 + L1M4b LINE L1 2475 2678 -4460 761 178 15 7 chr1 139078337 139078472 -103585881 + FLAM_C SINE Alu 6 141 -2 180 125 0 0 chr1 139078498 139078530 -103585823 + (A)n Simple_repeat Simple_repeat 1 32 0 998 90 0 0 chr1 139078617 139078750 -103585603 - AluSg/x SINE Alu -3 309 177 552 168 60 103 chr1 139078751 139078786 -103585567 + L1M4c LINE L1 896 931 -5453 1827 166 20 0 chr1 139078786 139079081 -103585272 - AluJb SINE Alu -7 305 5 552 168 60 103 chr1 139079081 139079093 -103585260 + L1M4c LINE L1 931 942 -5442 2341 104 0 0 chr1 139079093 139079392 -103584961 - AluSq SINE Alu -14 299 1 552 168 60 103 chr1 139079392 139079528 -103584825 + L1M4c LINE L1 942 1072 -5312 1115 282 105 4 chr1 139081129 139081594 -103582759 + L1ME LINE L1 5298 5809 -353 244 200 200 0 chr1 139081695 139081775 -103582578 - L1ME3A LINE L1 -224 5946 5851 527 151 7 110 chr1 139082071 139082217 -103582136 + L2 LINE L2 3171 3301 -12 194 283 0 0 chr1 139082425 139082471 -103581882 - MER5B DNA MER1_type -45 133 88 1691 207 19 11 chr1 139083937 139084304 -103580049 - MLT1A2 LTR MaLR 0 374 5 1476 201 4 4 chr1 139084442 139084705 -103579648 + AluJo SINE Alu 1 263 -49 540 0 0 0 chr1 139084718 139084778 -103579575 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 2273 51 0 14 chr1 139085074 139085349 -103579004 - AluY SINE Alu -40 271 1 657 107 0 91 chr1 139085352 139085473 -103578880 - MLT1B LTR MaLR -280 110 1 228 206 11 87 chr1 139085514 139085606 -103578747 - L1MC4 LINE L1 -1338 6704 6620 1942 139 29 23 chr1 139085805 139086115 -103578238 + AluJo SINE Alu 1 312 0 856 146 8 0 chr1 139086125 139086248 -103578105 + AluSq/x SINE Alu 1 124 -189 22 56 0 0 chr1 139086815 139086851 -103577502 + AT_rich Low_complexity Low_complexity 1 36 0 4599 46 2 0 chr1 139089402 139089927 -103574426 - LTR5 LTR ERVK -443 526 1 3479 69 14 0 chr1 139089927 139090571 -103573782 - L1P LINE L1 -4751 1395 615 541 235 148 0 chr1 139090881 139091040 -103573313 + MER5A DNA MER1_type 4 189 0 444 164 0 0 chr1 139091153 139091242 -103573111 - L1MA7 LINE L1 -136 6155 6078 669 105 0 35 chr1 139091246 139091360 -103572993 + L1MA7 LINE L1 6175 6284 -7 1506 251 45 16 chr1 139091930 139092630 -103571723 + L1M4c LINE L1 1176 2216 -4167 309 276 92 10 chr1 139092686 139092882 -103571471 + L1M4c LINE L1 2029 2240 -4144 2410 45 9 36 chr1 139092919 139093253 -103571100 - L1PA3 LINE L1 -314 5841 5517 9709 89 3 1 chr1 139093921 139095340 -103569013 - L1P LINE L1 -1441 4705 3283 277 284 28 55 chr1 139095447 139095556 -103568797 - MIR SINE MIR -150 112 7 1142 167 64 39 chr1 139096090 139096401 -103567952 + MER33 DNA MER1_type 1 319 -5 225 241 51 13 chr1 139096480 139096559 -103567794 - MER20B DNA MER1_type 0 783 702 1828 76 4 0 chr1 139096663 139096900 -103567453 + LTR5 LTR ERVK 729 966 -3 8428 40 1 0 chr1 139096903 139098000 -103566353 + L1P LINE L1 1390 2487 -3659 380 280 64 16 chr1 139098653 139098778 -103565575 + L2 LINE L2 3141 3271 -1 188 396 44 0 chr1 139099877 139099968 -103564385 - L2 LINE L2 -216 3056 2962 323 216 157 60 chr1 139099985 139100170 -103564183 - LTR16A LTR ERVL 0 450 248 1053 159 11 0 chr1 139100187 139100363 -103563990 - L1PA15 LINE L1 -8 6157 5980 408 323 40 16 chr1 139101709 139101833 -103562520 - L2 LINE L2 -9 3263 3137 529 286 108 83 chr1 139102774 139103177 -103561176 - L2 LINE L2 -1 3271 2854 2603 55 0 3 chr1 139103177 139103485 -103560868 + AluY SINE Alu 1 307 -4 529 286 108 83 chr1 139103485 139103614 -103560739 - L2 LINE L2 -418 2854 2730 329 267 34 103 chr1 139104579 139104595 -103559758 + L2 LINE L2 3122 3138 -134 2202 175 51 59 chr1 139104595 139105104 -103559249 + MLT1D LTR MaLR 1 505 0 329 267 34 103 chr1 139105104 139105233 -103559120 + L2 LINE L2 3138 3257 -15 329 354 27 20 chr1 139105494 139105641 -103558712 + MIR SINE MIR 3 150 -112 207 0 0 0 chr1 139106887 139106910 -103557443 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1880 111 4 4 chr1 139106912 139107165 -103557188 - AluSx SINE Alu -24 288 36 654 248 67 75 chr1 139108328 139108582 -103555771 - MIR SINE MIR 0 262 11 225 218 0 173 chr1 139108923 139109010 -103555343 + L1MEd LINE L1 1087 1121 -5084 1818 141 48 10 chr1 139109010 139109300 -103555053 + AluSx SINE Alu 1 301 -11 225 218 0 173 chr1 139109300 139109414 -103554939 + L1MEd LINE L1 1121 1253 -4952 * 329 256 56 8 chr1 139109413 139109538 -103554815 + L1MEd LINE L1 1574 1704 -4692 944 164 32 196 chr1 139109968 139110402 -103553951 + MLT1A1 LTR MaLR 1 363 -2 403 303 0 0 chr1 139111554 139111663 -103552690 - MER94 DNA DNA -2 132 24 227 157 118 0 chr1 139111681 139111732 -103552621 + L2 LINE L2 2992 3048 -224 942 237 58 14 chr1 139111823 139112114 -103552239 + MER58B DNA MER1_type 1 304 -37 25 0 0 0 chr1 139112883 139112908 -103551445 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 139114129 139114150 -103550203 + AT_rich Low_complexity Low_complexity 1 21 0 13775 46 4 1 chr1 139114381 139116749 -103547604 - L1PA7 LINE L1 -178 5976 3601 616 294 144 51 chr1 139117239 139117797 -103546556 - L2 LINE L2 -3 3310 2692 623 302 120 7 chr1 139117840 139118131 -103546222 + L1MEc LINE L1 464 787 -6038 1565 261 85 29 chr1 139118142 139118942 -103545411 + L1MEc LINE L1 1502 2499 -4326 950 199 11 5 chr1 139118943 139119134 -103545219 + MLT1A1 LTR MaLR 1 192 -173 1891 141 3 19 chr1 139119269 139119582 -103544771 + AluSx SINE Alu 1 308 -4 633 39 0 0 chr1 139119622 139119700 -103544653 + HERVK9 LTR ERVK 491 568 -5348 * 30949 79 4 1 chr1 139119698 139123896 -103540457 + HERVK9 LTR ERVK 1424 5634 -282 2162 115 11 10 chr1 139123921 139124273 -103540080 + HERVK9 LTR ERVK 5635 5915 -1 3316 94 53 10 chr1 139124274 139124764 -103539589 + MER9 LTR ERVK 1 511 0 4293 158 17 52 chr1 139124771 139124798 -103539555 + L1MB4 LINE L1 5258 5284 -896 1779 176 3 7 chr1 139124798 139125100 -103539253 + AluJb SINE Alu 1 301 -11 4293 158 17 52 chr1 139125100 139125995 -103538358 + L1MB4 LINE L1 5284 6151 -29 2325 82 0 0 chr1 139125995 139126297 -103538056 + AluSg SINE Alu 1 302 0 4293 158 17 52 chr1 139126297 139126326 -103538027 + L1MB4 LINE L1 6151 6179 -1 975 175 22 2 chr1 139126343 139126560 -103537793 + L1MB4 LINE L1 5615 5834 -346 807 153 0 0 chr1 139127277 139127395 -103536958 + AluJb SINE Alu 1 118 -194 243 114 0 0 chr1 139127396 139127440 -103536913 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2233 83 0 20 chr1 139128087 139128387 -103535966 - AluY SINE Alu -17 294 1 1939 142 3 20 chr1 139129053 139129349 -103535004 - AluJo SINE Alu -19 293 3 2328 104 0 0 chr1 139129501 139129799 -103534554 - AluSg SINE Alu -12 298 1 621 241 87 14 chr1 139129835 139130019 -103534334 + MIR SINE MIR 61 256 -6 663 276 6 0 chr1 139130134 139130297 -103534056 - MIR SINE MIR -21 241 78 901 182 0 36 chr1 139130375 139130540 -103533813 - FRAM SINE Alu -19 157 1 21 0 0 0 chr1 139130547 139130568 -103533785 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr1 139130642 139130692 -103533661 + AT_rich Low_complexity Low_complexity 1 50 0 447 300 76 22 chr1 139130779 139131314 -103533039 - L1MEc LINE L1 -856 1634 1162 603 314 133 28 chr1 139131315 139131388 -103532965 - L1MEc LINE L1 -5011 1108 1044 2093 118 30 0 chr1 139131388 139131684 -103532669 - AluSx SINE Alu -7 305 1 603 314 133 28 chr1 139131684 139132078 -103532275 - L1MEc LINE L1 -5075 1044 592 326 139 56 28 chr1 139132511 139132607 -103531746 + FLAM_A SINE Alu 44 141 0 2453 64 6 6 chr1 139132629 139132940 -103531413 - AluY SINE Alu 0 311 1 218 315 118 16 chr1 139132959 139133086 -103531267 + L2 LINE L2 2915 3054 -218 1986 161 0 0 chr1 139133419 139133729 -103530624 - AluJb SINE Alu -2 310 1 2427 82 0 0 chr1 139134726 139135020 -103529333 + AluSq SINE Alu 1 294 -19 2136 125 0 16 chr1 139135025 139135337 -103529016 + AluSq SINE Alu 1 307 -6 2578 68 0 0 chr1 139135362 139135671 -103528682 + AluY SINE Alu 1 309 -2 503 251 95 17 chr1 139135681 139136004 -103528349 - L1MC4a LINE L1 -74 6047 5668 2171 110 0 7 chr1 139136004 139136305 -103528048 + AluSx SINE Alu 1 299 -13 503 251 95 17 chr1 139136305 139136395 -103527958 - L1MC4a LINE L1 -453 5668 5586 2475 68 6 3 chr1 139136571 139136882 -103527471 + AluSq SINE Alu 1 312 -1 2286 95 0 0 chr1 139137492 139137777 -103526576 - AluSx SINE Alu -27 285 1 309 179 0 0 chr1 139138214 139138281 -103526072 - Alu SINE Alu 0 301 235 2225 96 3 16 chr1 139138328 139138641 -103525712 + AluSg SINE Alu 1 309 -1 1858 151 16 7 chr1 139138693 139138998 -103525355 + AluSx SINE Alu 1 308 -4 21 57 0 0 chr1 139139045 139139080 -103525273 + AT_rich Low_complexity Low_complexity 1 35 0 323 118 0 0 chr1 139139258 139139309 -103525044 + L1P LINE L1 5172 5222 -924 2231 113 0 7 chr1 139139309 139139609 -103524744 - AluSx SINE Alu -14 298 1 1284 168 74 81 chr1 139139609 139139639 -103524714 - AluJo SINE Alu -16 296 267 1656 178 3 56 chr1 139139639 139139959 -103524394 + AluJb SINE Alu 1 303 -9 1284 168 74 81 chr1 139139959 139140226 -103524127 - AluJo SINE Alu -45 267 1 362 221 188 19 chr1 139140334 139140488 -103523865 - L1ME4a LINE L1 0 6121 5942 368 226 151 45 chr1 139140565 139140622 -103523731 + HAL1b LINE L1 740 790 -558 1651 104 0 22 chr1 139140622 139140853 -103523500 + AluSg/x SINE Alu 84 309 -3 368 226 151 45 chr1 139140853 139140994 -103523359 + HAL1b LINE L1 790 959 -389 186 43 0 0 chr1 139141000 139141023 -103523330 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 1667 153 27 34 chr1 139141023 139141317 -103523036 - AluJb SINE Alu -20 292 1 618 212 128 24 chr1 139141317 139141652 -103522701 - L1MC5 LINE L1 -49 7912 7543 2282 87 0 29 chr1 139141679 139141989 -103522364 - AluSx SINE Alu -11 301 1 359 96 0 0 chr1 139142040 139142092 -103522261 - Alu SINE Alu -255 53 2 1273 119 0 0 chr1 139142103 139142279 -103522074 - AluSg/x SINE Alu 0 312 137 2164 126 0 7 chr1 139142282 139142583 -103521770 - AluSx SINE Alu -13 299 1 326 122 209 78 chr1 139142583 139142669 -103521684 - HAL1b LINE L1 -219 1129 1023 1791 166 23 10 chr1 139142669 139142970 -103521383 - AluJo SINE Alu -7 305 1 326 122 209 78 chr1 139142970 139142998 -103521355 - HAL1b LINE L1 -325 1023 1000 2313 66 55 0 chr1 139143062 139143351 -103521002 + AluSp SINE Alu 1 305 -8 509 233 123 22 chr1 139143360 139143588 -103520765 - HAL1b LINE L1 -353 995 745 1548 108 132 0 chr1 139143740 139143998 -103520355 + AluSc SINE Alu 1 292 -17 1544 183 16 16 chr1 139144559 139144865 -103519488 + AluJb SINE Alu 1 306 -6 755 189 0 16 chr1 139144865 139144992 -103519361 + AluSq/x SINE Alu 1 125 -187 543 262 70 94 chr1 139145842 139145909 -103518444 - MIR SINE MIR 0 262 195 2012 112 43 0 chr1 139145909 139146187 -103518166 + AluSq SINE Alu 1 290 -23 543 262 70 94 chr1 139146187 139146375 -103517978 - MIR SINE MIR -67 195 13 527 238 47 69 chr1 139146670 139146827 -103517526 + L1ME4a LINE L1 5782 5932 -189 1861 150 17 3 chr1 139146827 139147120 -103517233 + AluSx SINE Alu 1 297 -15 527 238 47 69 chr1 139147120 139147239 -103517114 + L1ME4a LINE L1 5932 6052 -69 613 184 57 7 chr1 139147244 139147385 -103516968 - L1ME2 LINE L1 -3 6161 6014 2029 127 23 10 chr1 139147388 139147695 -103516658 + AluJb SINE Alu 1 311 -1 2074 128 10 10 chr1 139148162 139148297 -103516056 + AluSx SINE Alu 1 135 -177 2568 33 13 0 chr1 139148297 139148596 -103515757 + AluY SINE Alu 1 303 -8 2074 128 10 10 chr1 139148596 139148772 -103515581 + AluSx SINE Alu 134 312 0 1898 174 36 21 chr1 139148946 139149330 -103515023 + MLT1B LTR MaLR 1 390 0 881 153 0 0 chr1 139149396 139149527 -103514826 - FLAM_C SINE Alu -2 131 1 2267 100 7 0 chr1 139149721 139150012 -103514341 - AluSq SINE Alu -19 294 2 25 31 0 0 chr1 139150013 139150045 -103514308 + AT_rich Low_complexity Low_complexity 1 32 0 2186 131 3 13 chr1 139150478 139150792 -103513561 + AluSx SINE Alu 1 311 -1 2410 101 0 0 chr1 139150920 139151218 -103513135 - AluSg SINE Alu -12 298 1 1647 174 33 3 chr1 139151250 139151549 -103512804 - AluJo SINE Alu -2 310 3 26 0 0 0 chr1 139152208 139152234 -103512119 + AT_rich Low_complexity Low_complexity 1 26 0 2274 100 13 3 chr1 139152341 139152641 -103511712 + AluSq SINE Alu 1 303 -10 621 257 140 37 chr1 139152858 139153294 -103511059 + L1ME3A LINE L1 5682 6164 0 2170 118 3 0 chr1 139153515 139153819 -103510534 + AluSx SINE Alu 1 305 -7 1808 139 39 11 chr1 139154704 139154984 -103509369 - AluSx SINE Alu -24 288 1 1958 156 21 0 chr1 139155034 139155323 -103509030 - AluJo SINE Alu -14 298 4 225 329 134 48 chr1 139155593 139155841 -103508512 + L2 LINE L2 2752 3020 -252 1047 129 0 0 chr1 139156059 139156199 -103508154 + AluSq/x SINE Alu 3 142 -170 330 177 0 27 chr1 139156203 139156294 -103508059 + Alu SINE Alu 1 47 -255 2116 125 0 7 chr1 139156294 139156589 -103507764 + AluSx SINE Alu 18 310 -2 396 189 123 0 chr1 139156791 139156913 -103507440 - L1ME3A LINE L1 -232 5938 5802 360 263 26 103 chr1 139157024 139157180 -103507173 + L2 LINE L2 3166 3309 -4 1733 169 20 24 chr1 139157441 139157737 -103506616 - AluJb SINE Alu -17 295 1 31 26 0 0 chr1 139158788 139158826 -103505527 + AT_rich Low_complexity Low_complexity 1 38 0 270 176 0 0 chr1 139158837 139158888 -103505465 + (TATG)n Simple_repeat Simple_repeat 2 52 0 264 108 14 40 chr1 139158927 139159001 -103505352 + (TGGGGG)n Simple_repeat Simple_repeat 1 72 0 2325 109 0 3 chr1 139159901 139160214 -103504139 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 139161687 139161711 -103502642 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 139162328 139162350 -103502003 + AT_rich Low_complexity Low_complexity 1 22 0 2287 79 0 30 chr1 139164306 139164609 -103499744 - AluSc SINE Alu -15 294 1 25 0 0 0 chr1 139164610 139164635 -103499718 + AT_rich Low_complexity Low_complexity 1 25 0 920 194 0 0 chr1 139165050 139165220 -103499133 - FRAM SINE Alu -7 169 1 408 114 25 13 chr1 139165232 139165311 -103499042 - L1MB7 LINE L1 0 6184 6105 1403 176 71 6 chr1 139165424 139165777 -103498576 - L1MB8 LINE L1 -98 6080 5705 671 226 73 0 chr1 139166302 139166466 -103497887 + MER63B DNA MER1_type 2 177 -259 813 103 0 0 chr1 139166733 139166840 -103497513 + U6 snRNA snRNA 1 107 0 6524 63 41 5 chr1 139166840 139167787 -103496566 + L1PA10 LINE L1 5190 6168 0 409 248 113 23 chr1 139167971 139168104 -103496249 + L2 LINE L2 3168 3312 -1 221 288 0 17 chr1 139168711 139168770 -103495583 + L3 LINE CR1 1520 1577 0 1571 184 41 7 chr1 139169331 139169624 -103494729 + AluJo SINE Alu 1 303 -9 2053 120 3 3 chr1 139169628 139169940 -103494413 + AluSx SINE Alu 1 312 0 2390 100 3 0 chr1 139170111 139170421 -103493932 + AluSp SINE Alu 1 311 -2 181 304 98 45 chr1 139170867 139170979 -103493374 - L2 LINE L2 0 3272 3155 * 474 261 26 0 chr1 139170978 139171093 -103493260 + L3 LINE CR1 1414 1531 -46 206 178 133 0 chr1 139171273 139171318 -103493035 + L3 LINE CR1 1525 1575 -2 26 30 0 0 chr1 139171712 139171745 -103492608 + AT_rich Low_complexity Low_complexity 1 33 0 775 228 49 5 chr1 139171864 139172048 -103492305 + MIR SINE MIR 71 262 0 859 276 92 34 chr1 139172158 139172521 -103491832 - L1MC4a LINE L1 -1907 5901 5506 2208 122 0 0 chr1 139172521 139172815 -103491538 + AluSx SINE Alu 1 294 -18 859 276 92 34 chr1 139172815 139172896 -103491457 - L1MC4a LINE L1 -2302 5506 5431 21 0 0 0 chr1 139173290 139173311 -103491042 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 139173418 139173443 -103490910 + AT_rich Low_complexity Low_complexity 1 25 0 3735 189 22 76 chr1 139174057 139175081 -103489272 + LTR5 LTR ERVK 1 969 0 450 286 16 54 chr1 139175180 139175365 -103488988 + MIR SINE MIR 84 261 -1 860 257 45 16 chr1 139175703 139175948 -103488405 + MIR SINE MIR 1 252 -10 212 293 73 32 chr1 139176178 139176301 -103488052 + MIR SINE MIR 79 206 -56 1004 281 129 37 chr1 139177177 139177428 -103486925 + L2 LINE L2 2442 2668 -645 2163 122 7 0 chr1 139177428 139177714 -103486639 - AluSx SINE Alu -24 288 1 1004 281 129 37 chr1 139177714 139178243 -103486110 + L2 LINE L2 2668 3291 -22 967 68 0 0 chr1 139178298 139178416 -103485937 + AluY SINE Alu 177 294 -17 21 0 0 0 chr1 139178595 139178616 -103485737 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 139179276 139179299 -103485054 + AT_rich Low_complexity Low_complexity 1 23 0 185 149 43 43 chr1 139179479 139179526 -103484827 + MIR SINE MIR 68 114 -148 1904 135 7 3 chr1 139179645 139179951 -103484402 - AluSx SINE Alu 0 308 2 22 70 0 0 chr1 139179956 139179999 -103484354 + AT_rich Low_complexity Low_complexity 1 43 0 186 317 0 0 chr1 139180353 139180394 -103483959 + L2 LINE L2 3210 3250 -22 29 0 0 0 chr1 139180449 139180478 -103483875 + AT_rich Low_complexity Low_complexity 1 29 0 827 136 0 0 chr1 139180478 139180596 -103483757 - FLAM_C SINE Alu -15 118 1 23 33 0 0 chr1 139180757 139180787 -103483566 + AT_rich Low_complexity Low_complexity 1 30 0 1191 117 73 40 chr1 139180809 139181019 -103483334 + L1MB8 LINE L1 5677 5898 -280 2648 49 3 0 chr1 139181019 139181327 -103483026 - AluSc SINE Alu 0 309 1 1191 117 73 40 chr1 139181327 139181363 -103482990 + L1MB8 LINE L1 5898 5931 -247 2003 100 11 18 chr1 139181464 139181745 -103482608 + AluSx SINE Alu 26 304 -8 192 250 0 0 chr1 139181948 139181988 -103482365 + L3b LINE CR1 1538 1577 -6 232 314 101 18 chr1 139182384 139182553 -103481800 + L2 LINE L2 1922 2104 -1210 198 328 16 0 chr1 139182564 139182628 -103481725 + L2 LINE L2 2720 2784 -530 183 42 0 0 chr1 139182662 139182686 -103481667 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1102 178 10 20 chr1 139182688 139182835 -103481518 - AluJo SINE Alu -32 280 134 2436 66 0 7 chr1 139182835 139183137 -103481216 - AluY SINE Alu -11 300 1 1102 178 10 20 chr1 139183137 139183186 -103481167 - AluJo SINE Alu -178 134 86 597 284 131 9 chr1 139183260 139183489 -103480864 - MIR SINE MIR -2 260 4 301 361 9 0 chr1 139184023 139184131 -103480222 + MIR SINE MIR 154 262 0 2341 82 3 0 chr1 139184187 139184481 -103479872 - AluSp SINE Alu -18 295 1 442 268 18 0 chr1 139184519 139184631 -103479722 - MER81 DNA DNA 0 114 1 1298 274 127 17 chr1 139184729 139185344 -103479009 - L2 LINE L2 -38 3275 2551 1470 146 0 0 chr1 139185344 139185570 -103478783 + Tigger1 DNA MER2_type 1 226 -2192 1063 173 47 47 chr1 139185570 139185784 -103478569 - AluJo SINE Alu -14 298 85 3410 111 50 41 chr1 139185784 139185992 -103478361 + Tigger1 DNA MER2_type 218 423 -1995 2216 97 10 3 chr1 139185992 139186291 -103478062 + AluSx SINE Alu 1 301 -11 3410 111 50 41 chr1 139186291 139186508 -103477845 + Tigger1 DNA MER2_type 423 652 -1766 1400 150 176 8 chr1 139186508 139186742 -103477611 + AluSx SINE Alu 1 287 -25 297 0 0 0 chr1 139186742 139186775 -103477578 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1400 150 176 8 chr1 139186775 139186807 -103477546 + AluSx SINE Alu 287 312 0 3410 111 50 41 chr1 139186807 139186938 -103477415 + Tigger1 DNA MER2_type 652 780 -1638 393 340 42 58 chr1 139186999 139187190 -103477163 + L2 LINE L2 3082 3269 -3 214 299 75 0 chr1 139187196 139187263 -103477090 - L2 LINE L2 -62 3251 3180 2287 89 0 29 chr1 139187457 139187771 -103476582 - AluY SINE Alu -6 305 1 1656 182 28 14 chr1 139187778 139188064 -103476289 - AluJo SINE Alu -20 292 3 1542 198 21 10 chr1 139188089 139188377 -103475976 - AluJo SINE Alu -21 291 1 709 252 64 68 chr1 139188382 139188670 -103475683 - L1ME4a LINE L1 -207 5914 5626 2187 116 0 3 chr1 139188670 139188963 -103475390 + AluSx SINE Alu 1 292 -20 709 252 64 68 chr1 139188963 139189035 -103475318 - L1ME4a LINE L1 -495 5626 5554 2082 114 0 63 chr1 139189035 139189352 -103475001 + AluSc SINE Alu 1 297 -12 709 252 64 68 chr1 139189352 139189399 -103474954 - L1ME4a LINE L1 -567 5554 5508 252 334 72 62 chr1 139189445 139189765 -103474588 - L2 LINE L2 -356 2958 2636 768 142 0 9 chr1 139190515 139190621 -103473732 - FLAM_C SINE Alu -23 120 16 2219 128 0 0 chr1 139190751 139191057 -103473296 + AluSx SINE Alu 1 306 -6 1479 208 24 0 chr1 139191059 139191347 -103473006 + AluJo SINE Alu 1 295 -17 2272 112 0 0 chr1 139191349 139191665 -103472688 + AluSx SINE Alu 1 312 0 226 267 116 12 chr1 139191743 139191829 -103472524 + MIR SINE MIR 52 146 -62 14473 117 18 50 chr1 139191850 139192720 -103471633 + Tigger1 DNA MER2_type 1 898 -1520 680 38 0 0 chr1 139192720 139192800 -103471553 + AluY SINE Alu 229 308 -4 14473 117 18 50 chr1 139192800 139193731 -103470622 + Tigger1 DNA MER2_type 898 1790 -628 2000 118 7 0 chr1 139193731 139194001 -103470352 - AluSg SINE Alu -12 298 27 14473 117 18 50 chr1 139194001 139194498 -103469855 + Tigger1 DNA MER2_type 1790 2302 -116 2672 44 0 16 chr1 139194522 139194838 -103469515 + AluY SINE Alu 1 311 0 1705 116 38 69 chr1 139195456 139195634 -103468719 - AluSc SINE Alu -1 308 143 1977 90 43 0 chr1 139195634 139195913 -103468440 - AluSg SINE Alu -19 291 1 1705 116 38 69 chr1 139195913 139196052 -103468301 - AluSc SINE Alu -166 143 1 2524 86 0 0 chr1 139196652 139196965 -103467388 - AluSq SINE Alu 0 313 1 14763 116 18 73 chr1 139197253 139197367 -103466986 - Tigger1 DNA MER2_type 0 2418 2299 1663 181 10 3 chr1 139197367 139197659 -103466694 + AluJo SINE Alu 1 294 -18 14763 116 18 73 chr1 139197659 139197699 -103466654 - Tigger1 DNA MER2_type -119 2299 2258 2500 47 0 17 chr1 139197699 139197996 -103466357 - AluY SINE Alu -19 292 1 14763 116 18 73 chr1 139197996 139198517 -103465836 - Tigger1 DNA MER2_type -160 2258 1710 2000 118 7 0 chr1 139198517 139198787 -103465566 + AluSg SINE Alu 27 298 -12 14763 116 18 73 chr1 139198787 139199718 -103464635 - Tigger1 DNA MER2_type -708 1710 917 680 38 0 0 chr1 139199718 139199798 -103464555 - AluY SINE Alu -4 305 226 14763 116 18 73 chr1 139199798 139200668 -103463685 - Tigger1 DNA MER2_type -1501 917 1 226 267 116 12 chr1 139200689 139200775 -103463578 - MIR SINE MIR -62 146 52 2272 112 0 0 chr1 139200853 139201169 -103463184 - AluSx SINE Alu 0 312 1 1479 208 24 0 chr1 139201171 139201459 -103462894 - AluJo SINE Alu -17 295 1 2219 128 0 0 chr1 139201461 139201767 -103462586 - AluSx SINE Alu -6 306 1 1522 164 44 44 chr1 139201897 139202000 -103462353 + AluJo SINE Alu 16 118 -194 441 0 0 0 chr1 139202000 139202049 -103462304 + (CA)n Simple_repeat Simple_repeat 2 50 0 1522 164 44 44 chr1 139202049 139202238 -103462115 + AluJo SINE Alu 117 308 -4 22 35 0 0 chr1 139202351 139202380 -103461973 + AT_rich Low_complexity Low_complexity 1 29 0 425 91 0 0 chr1 139202381 139202436 -103461917 - U6 snRNA snRNA -52 55 1 2420 88 0 0 chr1 139202605 139202900 -103461453 - AluSq SINE Alu -18 295 1 29 0 0 0 chr1 139202911 139202940 -103461413 + AT_rich Low_complexity Low_complexity 1 29 0 1540 128 34 138 chr1 139202945 139203272 -103461081 - AluJo SINE Alu -8 294 2 25 31 0 0 chr1 139203350 139203382 -103460971 + AT_rich Low_complexity Low_complexity 1 32 0 6616 132 85 25 chr1 139203494 139205127 -103459226 - SVA Other Other -520 1386 57 345 47 0 0 chr1 139205127 139205170 -103459183 + (AGGGGG)n Simple_repeat Simple_repeat 2 44 0 332 172 16 0 chr1 139205217 139205281 -103459072 + Charlie4a DNA MER1_type 25 89 -419 1303 220 52 75 chr1 139205281 139205838 -103458515 - MER39 LTR ERV1 0 707 1 * 1629 165 100 16 chr1 139205838 139206205 -103458148 + Charlie4a DNA MER1_type 86 483 -25 2313 111 0 0 chr1 139206274 139206572 -103457781 + AluSx SINE Alu 1 298 -14 1701 168 3 17 chr1 139207086 139207378 -103456975 - AluJo SINE Alu -23 289 2 1926 142 7 10 chr1 139207775 139208077 -103456276 - AluSx SINE Alu -11 301 1 859 177 31 52 chr1 139208850 139209042 -103455311 + AluJo SINE Alu 1 188 -124 2194 112 7 0 chr1 139209199 139209495 -103454858 - AluSp SINE Alu -15 298 1 533 105 98 0 chr1 139209603 139209889 -103454464 + (TA)n Simple_repeat Simple_repeat 1 314 0 399 276 52 0 chr1 139209899 139210015 -103454338 + L2 LINE L2 3151 3272 0 180 272 61 70 chr1 139210029 139210143 -103454210 - L2 LINE L2 -1390 1924 1812 1571 148 36 87 chr1 139210360 139210537 -103453816 + MLT1C LTR MaLR 1 155 -312 1812 163 0 3 chr1 139210537 139210825 -103453528 + AluJo SINE Alu 1 287 -25 1571 148 36 87 chr1 139210825 139210979 -103453374 + MLT1C LTR MaLR 155 315 -152 477 219 57 0 chr1 139211006 139211111 -103453242 - L1MA9 LINE L1 -22 6290 6180 1000 186 27 0 chr1 139211113 139211301 -103453052 - L1MA9 LINE L1 -231 6081 5889 796 172 76 0 chr1 139211304 139211449 -103452904 + MLT1C LTR MaLR 312 467 0 859 330 85 54 chr1 139211554 139212792 -103451561 - L2 LINE L2 -9 3263 1976 204 217 0 0 chr1 139212823 139212869 -103451484 + (CAT)n Simple_repeat Simple_repeat 3 48 0 2346 92 0 0 chr1 139213170 139213463 -103450890 + AluSc SINE Alu 3 295 -14 5365 143 12 22 chr1 139213687 139213741 -103450612 + Tigger1 DNA MER2_type 1 54 -2364 780 258 0 18 chr1 139213741 139213904 -103450449 - FRAM SINE Alu -6 160 1 5365 143 12 22 chr1 139213904 139214701 -103449652 + Tigger1 DNA MER2_type 54 843 -1575 468 150 0 0 chr1 139214705 139214785 -103449568 + (CCCCG)n Simple_repeat Simple_repeat 5 84 0 1813 179 10 16 chr1 139214798 139215110 -103449243 - AluJo SINE Alu -2 310 1 308 262 118 52 chr1 139215677 139215802 -103448551 + L1ME4a LINE L1 5805 5920 -201 1863 158 3 20 chr1 139215802 139216100 -103448253 - AluJo SINE Alu -19 293 1 308 262 118 52 chr1 139216100 139216203 -103448150 + L1ME4a LINE L1 5920 6048 -73 2144 119 3 0 chr1 139216421 139216706 -103447647 - AluSx SINE Alu -26 286 1 1913 158 10 13 chr1 139218009 139218313 -103446040 - AluJb SINE Alu -9 303 1 1092 228 40 7 chr1 139218826 139219098 -103445255 + AluJb SINE Alu 1 281 -31 2337 103 0 0 chr1 139219551 139219853 -103444500 - AluSx SINE Alu -10 302 1 1988 125 28 0 chr1 139219870 139220159 -103444194 - AluSx SINE Alu -15 297 1 212 229 33 33 chr1 139220273 139220334 -103444019 - L2 LINE L2 -94 3219 3159 7670 122 43 13 chr1 139220604 139220895 -103443458 - Tigger3b DNA MER2_type -1797 1231 950 2481 85 0 0 chr1 139220895 139221201 -103443152 + AluSx SINE Alu 1 306 -6 7670 122 43 13 chr1 139221201 139222103 -103442250 - Tigger3b DNA MER2_type -2078 950 2 2433 103 3 0 chr1 139222142 139222453 -103441900 - AluSp SINE Alu -1 312 1 315 221 47 23 chr1 139222672 139222758 -103441595 + L3 LINE CR1 1335 1422 -155 2192 128 0 0 chr1 139223491 139223787 -103440566 - AluSx SINE Alu -16 296 1 1186 209 68 55 chr1 139223945 139224140 -103440213 - AluJo SINE Alu 0 302 117 198 71 0 0 chr1 139224140 139224168 -103440185 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1186 209 68 55 chr1 139224168 139224286 -103440067 - AluJo SINE Alu -185 117 2 1808 144 3 66 chr1 139224287 139224606 -103439747 - AluJo SINE Alu -13 299 1 632 259 60 59 chr1 139224608 139225118 -103439235 - L1MEd LINE L1 -1069 1421 810 8242 139 18 25 chr1 139225688 139226043 -103438310 + L1MA7 LINE L1 3885 4241 -2050 1803 164 38 14 chr1 139226043 139226336 -103438017 + AluJo SINE Alu 1 300 -12 2297 119 0 0 chr1 139226336 139226646 -103437707 + AluSg SINE Alu 1 310 0 8242 139 18 25 chr1 139226646 139226887 -103437466 + L1MA7 LINE L1 4240 4481 -1810 2313 103 3 0 chr1 139226887 139227198 -103437155 + AluSp SINE Alu 1 312 -1 8242 139 18 25 chr1 139227198 139229028 -103435325 + L1MA7 LINE L1 4481 6290 -1 982 264 55 57 chr1 139229272 139229676 -103434677 + L2 LINE L2 2886 3290 -23 2271 114 0 0 chr1 139229676 139229975 -103434378 - AluSx SINE Alu -13 299 1 982 264 55 57 chr1 139229975 139229990 -103434363 + L2 LINE L2 3290 3304 -9 1731 167 17 27 chr1 139231394 139231687 -103432666 + AluJb SINE Alu 3 292 -20 255 61 0 0 chr1 139231924 139231957 -103432396 + (TG)n Simple_repeat Simple_repeat 2 34 0 469 164 41 85 chr1 139232025 139232194 -103432159 - L1M1 LINE L1 -731 5431 5256 203 0 37 0 chr1 139232194 139232221 -103432132 + (TG)n Simple_repeat Simple_repeat 2 29 0 2151 106 0 0 chr1 139232221 139232505 -103431848 - AluSg1 SINE Alu -25 284 1 469 164 41 85 chr1 139232505 139232608 -103431745 - L1M1 LINE L1 -904 5258 5188 480 280 44 53 chr1 139232957 139233205 -103431148 - L1M4 LINE L1 -1300 4846 4600 1995 147 0 13 chr1 139233205 139233511 -103430842 - AluJb SINE Alu -10 302 1 480 280 44 53 chr1 139233511 139233580 -103430773 - L1M4 LINE L1 -1546 4600 4532 990 219 39 108 chr1 139233644 139233910 -103430443 - L1MC5 LINE L1 -48 7913 7683 2145 127 0 0 chr1 139233910 139234202 -103430151 - AluSx SINE Alu -9 303 12 990 219 39 108 chr1 139234202 139234341 -103430012 - L1MC5 LINE L1 -278 7683 7536 1374 289 90 50 chr1 139234344 139235430 -103428923 - L1MC4a LINE L1 -811 6997 5868 285 233 14 0 chr1 139235570 139235643 -103428710 + LTR37A LTR ERV1 111 184 -242 2217 126 0 0 chr1 139235689 139235990 -103428363 - AluSx SINE Alu -11 301 1 304 195 221 0 chr1 139235993 139236106 -103428247 + LTR37A LTR ERV1 289 426 0 746 332 16 12 chr1 139236151 139236395 -103427958 + LTR67 LTR ERVL 17 261 -296 252 77 0 0 chr1 139236405 139236444 -103427909 + (CAG)n Simple_repeat Simple_repeat 1 39 0 2431 84 3 0 chr1 139236630 139236929 -103427424 - AluSq SINE Alu -13 300 1 246 363 0 0 chr1 139237911 139237991 -103426362 + MIR SINE MIR 59 138 -124 2682 46 3 0 chr1 139238221 139238525 -103425828 - AluY SINE Alu -6 305 1 2182 116 30 0 chr1 139238540 139238843 -103425510 - AluSx SINE Alu 0 312 1 1174 259 13 46 chr1 139238843 139239299 -103425054 + L1M4 LINE L1 2234 2674 -3472 682 206 62 0 chr1 139239304 139239450 -103424903 - FRAM SINE Alu -16 160 6 1040 195 124 39 chr1 139239456 139239794 -103424559 + L1M4 LINE L1 2675 3041 -3105 241 242 11 11 chr1 139239795 139239886 -103424467 + AluY SINE Alu 3 93 -208 2072 123 3 20 chr1 139240024 139240324 -103424029 - AluSx SINE Alu -17 295 1 377 279 49 77 chr1 139240556 139240739 -103423614 - MIR SINE MIR -32 230 53 416 255 172 78 chr1 139240797 139240931 -103423422 - MER63A DNA MER1_type -1478 210 50 1441 169 43 18 chr1 139240931 139241096 -103423257 - AluSx SINE Alu 0 321 162 2483 87 3 3 chr1 139241096 139241408 -103422945 - AluSx SINE Alu 0 312 1 1441 169 43 18 chr1 139241408 139241556 -103422797 - AluSx SINE Alu -159 162 1 416 255 172 78 chr1 139241556 139241612 -103422741 - MER63A DNA MER1_type -1638 50 1 1938 148 0 16 chr1 139241947 139242258 -103422095 + AluJb SINE Alu 1 306 -6 310 186 198 0 chr1 139242333 139242419 -103421934 + L2 LINE L2 3210 3312 -1 211 240 0 20 chr1 139242889 139242939 -103421414 - MIR SINE MIR -114 148 100 2207 88 51 0 chr1 139243324 139243618 -103420735 + AluSx SINE Alu 1 309 -3 877 211 108 0 chr1 139243883 139244096 -103420257 - MIR SINE MIR -25 237 2 250 243 32 45 chr1 139244509 139244637 -103419716 - L1ME LINE L1 -5939 131 3 627 176 30 85 chr1 139244684 139244766 -103419587 - Charlie5 DNA MER1_type 0 2585 2500 2359 100 3 0 chr1 139244766 139245077 -103419276 + AluSx SINE Alu 1 312 0 627 176 30 85 chr1 139245077 139245109 -103419244 - Charlie5 DNA MER1_type -85 2500 2468 2297 97 0 28 chr1 139245109 139245428 -103418925 + AluSg SINE Alu 1 310 0 627 176 30 85 chr1 139245428 139245511 -103418842 - Charlie5 DNA MER1_type -117 2468 2398 7662 64 23 18 chr1 139246123 139247822 -103416531 + SVA Other Other 1 1386 0 1969 139 3 7 chr1 139247875 139248169 -103416184 + AluSx SINE Alu 1 293 -19 1998 163 0 0 chr1 139249140 139249447 -103414906 - AluJb SINE Alu -5 307 1 546 185 10 53 chr1 139249752 139249884 -103414469 - MER33 DNA MER1_type -263 61 1 2064 147 0 0 chr1 139249925 139250211 -103414142 + AluJb SINE Alu 1 286 -26 200 122 41 0 chr1 139250214 139250263 -103414090 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 36 0 0 0 chr1 139250266 139250302 -103414051 + AT_rich Low_complexity Low_complexity 1 36 0 1384 162 114 11 chr1 139250320 139250592 -103413761 + AluJo SINE Alu 7 306 -6 507 256 92 0 chr1 139250832 139250996 -103413357 - MIR SINE MIR -5 257 79 2377 78 7 0 chr1 139251165 139251460 -103412893 + AluSp SINE Alu 1 297 -16 1565 112 29 4 chr1 139251932 139252173 -103412180 - AluSx SINE Alu -9 303 57 1833 126 48 0 chr1 139252173 139252468 -103411885 + AluSx SINE Alu 11 312 0 180 0 0 0 chr1 139253437 139253457 -103410896 + (TG)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr1 139253456 139253476 -103410877 + (GA)n Simple_repeat Simple_repeat 1 20 0 2029 86 11 39 chr1 139253477 139253756 -103410597 - AluSx SINE Alu -37 275 5 582 294 77 21 chr1 139254668 139254862 -103409491 + MLT1K LTR MaLR 27 231 -357 1819 154 38 0 chr1 139255111 139255404 -103408949 + AluJb SINE Alu 2 305 -7 2253 96 3 7 chr1 139255461 139255763 -103408590 + AluSx SINE Alu 12 312 0 2161 119 24 0 chr1 139255932 139256225 -103408128 + AluSx SINE Alu 1 300 -12 315 248 62 31 chr1 139256995 139257124 -103407229 + L2 LINE L2 2542 2674 -640 2073 142 0 3 chr1 139257461 139257757 -103406596 + AluJb SINE Alu 1 295 -17 2923 13 0 0 chr1 139257773 139258074 -103406279 + AluYb8 SINE Alu 1 304 -14 207 88 0 0 chr1 139258074 139258108 -103406245 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2923 13 0 0 chr1 139258108 139258120 -103406233 + AluYb8 SINE Alu 303 314 -4 2303 98 3 3 chr1 139258120 139258426 -103405927 + AluSq SINE Alu 1 306 -7 204 241 69 58 chr1 139258432 139258519 -103405834 - L2 LINE L2 -493 2821 2734 * 313 236 189 0 chr1 139258487 139258593 -103405760 + L2 LINE L2 3187 3312 -1 307 314 53 30 chr1 139258621 139258790 -103405563 - L2 LINE L2 -640 2674 2502 21 0 0 0 chr1 139258862 139258883 -103405470 + AT_rich Low_complexity Low_complexity 1 21 0 2262 103 0 0 chr1 139258883 139259175 -103405178 - AluSx SINE Alu -20 292 1 769 140 15 37 chr1 139259177 139259313 -103405040 - FLAM_A SINE Alu -1 141 9 3148 167 78 13 chr1 139259318 139259668 -103404685 - L1MB4 LINE L1 -347 5833 5507 198 0 0 0 chr1 139259668 139259690 -103404663 + (TTG)n Simple_repeat Simple_repeat 3 24 0 3148 167 78 13 chr1 139259690 139260021 -103404332 - L1MB4 LINE L1 -673 5507 5199 2324 100 3 0 chr1 139260021 139260322 -103404031 - AluSx SINE Alu -10 302 1 3148 167 78 13 chr1 139260322 139260855 -103403498 - L1MB4 LINE L1 -981 5199 4539 988 214 33 47 chr1 139260859 139261158 -103403195 + AluJo SINE Alu 2 296 -6 260 196 0 0 chr1 139261295 139261351 -103403002 + L2 LINE L2 3257 3312 -1 234 366 32 24 chr1 139261387 139261510 -103402843 + L2 LINE L2 3140 3263 -9 188 289 119 73 chr1 139262484 139262702 -103401651 - L2 LINE L2 -384 2930 2703 315 280 21 28 chr1 139262716 139262859 -103401494 - L2 LINE L2 -1024 2290 2149 2522 128 65 2 chr1 139263866 139264266 -103400087 + MSTB LTR MaLR 2 426 0 2427 65 7 3 chr1 139265188 139265482 -103398871 + AluY SINE Alu 1 295 -16 731 171 23 0 chr1 139265963 139266092 -103398261 + FAM SINE Alu 34 165 -20 2039 133 41 0 chr1 139266397 139266691 -103397662 - AluSx SINE Alu -6 306 1 2461 74 0 3 chr1 139266815 139267111 -103397242 - AluY SINE Alu -16 295 1 2403 88 0 0 chr1 139267273 139267568 -103396785 + AluSq SINE Alu 5 299 -14 1568 149 24 113 chr1 139267573 139267704 -103396649 + AluJo SINE Alu 1 142 -170 1692 171 17 14 chr1 139267704 139267991 -103396362 - AluJo SINE Alu -24 288 1 1568 149 24 113 chr1 139267991 139268194 -103396159 + AluJo SINE Alu 142 305 -7 433 296 39 22 chr1 139268283 139268462 -103395891 + L1ME LINE L1 5526 5707 -463 212 319 81 31 chr1 139268492 139268652 -103395701 + MIR SINE MIR 68 235 -27 617 262 169 4 chr1 139269711 139269936 -103394417 + MIR SINE MIR 1 262 0 222 348 62 0 chr1 139269986 139270098 -103394255 + L2 LINE L2 3151 3269 -3 444 266 131 86 chr1 139270133 139270203 -103394150 + L1MC/D LINE L1 5494 5559 -2249 1965 149 14 7 chr1 139270203 139270499 -103393854 + AluJb SINE Alu 1 298 -14 444 266 131 86 chr1 139270499 139270638 -103393715 + L1MC/D LINE L1 5559 5720 -2088 2309 95 13 0 chr1 139270638 139270942 -103393411 + AluSx SINE Alu 5 312 0 444 266 131 86 chr1 139270942 139270998 -103393355 + L1MC/D LINE L1 5720 5772 -2036 231 36 0 0 chr1 139272271 139272299 -103392054 + (TC)n Simple_repeat Simple_repeat 1 28 0 219 88 0 0 chr1 139272320 139272354 -103391999 + (TC)n Simple_repeat Simple_repeat 2 35 0 426 39 0 0 chr1 139272354 139272406 -103391947 + (CA)n Simple_repeat Simple_repeat 1 52 0 1829 135 4 32 chr1 139274591 139274872 -103389481 + AluSx SINE Alu 1 273 -39 22 0 0 0 chr1 139274907 139274929 -103389424 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 139275900 139275923 -103388430 + AT_rich Low_complexity Low_complexity 1 23 0 258 32 0 0 chr1 139276731 139276762 -103387591 + (CA)n Simple_repeat Simple_repeat 1 31 0 810 78 0 10 chr1 139277869 139277971 -103386382 - U6 snRNA snRNA -6 101 1 423 293 15 15 chr1 139278137 139278270 -103386083 - FLAM_A SINE Alu -9 133 1 2216 86 65 0 chr1 139278907 139279198 -103385155 - AluSp SINE Alu -3 310 1 2208 90 7 26 chr1 139279825 139280135 -103384218 + AluSx SINE Alu 1 304 -8 373 213 282 21 chr1 139280225 139280413 -103383940 - L1ME4a LINE L1 -4 6117 5881 22 56 0 0 chr1 139280502 139280538 -103383815 + AT_rich Low_complexity Low_complexity 1 36 0 2405 79 0 10 chr1 139280539 139280844 -103383509 + AluY SINE Alu 1 302 -9 2392 62 13 29 chr1 139280850 139281156 -103383197 + AluY SINE Alu 1 301 -10 23 0 0 0 chr1 139282740 139282763 -103381590 + AT_rich Low_complexity Low_complexity 1 23 0 2267 105 0 16 chr1 139282798 139283104 -103381249 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr1 139283716 139283739 -103380614 + AT_rich Low_complexity Low_complexity 1 23 0 1979 135 10 3 chr1 139283741 139284044 -103380309 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr1 139284140 139284161 -103380192 + AT_rich Low_complexity Low_complexity 1 21 0 2810 172 60 76 chr1 139284471 139285222 -103379131 + L1MB7 LINE L1 5446 6184 0 1122 147 53 11 chr1 139285316 139285506 -103378847 + MER58A DNA MER1_type 27 224 0 1744 167 22 0 chr1 139285653 139285928 -103378425 + AluJb SINE Alu 1 281 -31 261 0 0 0 chr1 139285931 139285960 -103378393 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1398 134 61 9 chr1 139286153 139286384 -103377969 - Tigger2 DNA MER2_type -15 2703 2461 4021 143 40 14 chr1 139286447 139286919 -103377434 - Tigger2 DNA MER2_type -1961 757 260 1890 116 0 127 chr1 139286919 139287265 -103377088 - AluSx SINE Alu -10 302 1 4021 143 40 14 chr1 139287265 139287496 -103376857 - Tigger2 DNA MER2_type -2458 260 36 3830 180 49 5 chr1 139287509 139288182 -103376171 + MER21B LTR ERV1 58 760 -103 1346 114 0 5 chr1 139288183 139288367 -103375986 - AluSg/x SINE Alu -6 306 124 2408 68 0 7 chr1 139288825 139289120 -103375233 - AluSc SINE Alu -14 295 3 2428 76 0 0 chr1 139289122 139289413 -103374940 - AluSc SINE Alu -18 291 1 1059 150 12 6 chr1 139289723 139289896 -103374457 + AluSg/x SINE Alu 121 294 -16 830 168 0 47 chr1 139290085 139290234 -103374119 + AluJo SINE Alu 43 184 -128 885 156 52 42 chr1 139290242 139290454 -103373899 + L1MB7 LINE L1 5922 6135 -49 2185 76 7 56 chr1 139290572 139290876 -103373477 - AluSg SINE Alu -21 289 1 496 137 0 88 chr1 139290924 139291026 -103373327 + AluJ/FRAM SINE Alu 216 308 -4 25 0 0 0 chr1 139291193 139291218 -103373135 + AT_rich Low_complexity Low_complexity 1 25 0 1286 159 17 64 chr1 139291480 139291552 -103372801 - L1MB8 LINE L1 -2 6176 6102 2424 51 27 0 chr1 139291552 139291845 -103372508 - AluY SINE Alu -10 301 1 1286 159 17 64 chr1 139291845 139292067 -103372286 - L1MB8 LINE L1 -76 6102 5896 2554 74 0 3 chr1 139292067 139292377 -103371976 + AluSc SINE Alu 1 309 0 231 36 0 0 chr1 139293706 139293734 -103370619 + (TC)n Simple_repeat Simple_repeat 1 28 0 219 88 0 0 chr1 139293755 139293789 -103370564 + (TC)n Simple_repeat Simple_repeat 2 35 0 426 39 0 0 chr1 139293789 139293841 -103370512 + (CA)n Simple_repeat Simple_repeat 1 52 0 2173 112 0 35 chr1 139296026 139296318 -103368035 + AluSx SINE Alu 1 283 -29 234 0 0 0 chr1 139296318 139296344 -103368009 + (CA)n Simple_repeat Simple_repeat 1 26 0 2173 112 0 35 chr1 139296344 139296365 -103367988 + AluSx SINE Alu 283 303 -9 23 0 0 0 chr1 139297336 139297359 -103366994 + AT_rich Low_complexity Low_complexity 1 23 0 258 32 0 0 chr1 139298167 139298198 -103366155 + (CA)n Simple_repeat Simple_repeat 1 31 0 810 78 0 10 chr1 139299305 139299407 -103364946 - U6 snRNA snRNA -6 101 1 423 293 15 15 chr1 139299573 139299706 -103364647 - FLAM_A SINE Alu -9 133 1 2216 86 65 0 chr1 139300343 139300634 -103363719 - AluSp SINE Alu -3 310 1 2208 90 7 26 chr1 139301261 139301571 -103362782 + AluSx SINE Alu 1 304 -8 373 213 282 21 chr1 139301661 139301849 -103362504 - L1ME4a LINE L1 -4 6117 5881 22 56 0 0 chr1 139301938 139301974 -103362379 + AT_rich Low_complexity Low_complexity 1 36 0 2405 79 0 10 chr1 139301975 139302280 -103362073 + AluY SINE Alu 1 302 -9 2392 62 13 29 chr1 139302286 139302592 -103361761 + AluY SINE Alu 1 301 -10 23 0 0 0 chr1 139304176 139304199 -103360154 + AT_rich Low_complexity Low_complexity 1 23 0 2267 105 0 16 chr1 139304234 139304540 -103359813 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr1 139305152 139305175 -103359178 + AT_rich Low_complexity Low_complexity 1 23 0 1979 135 10 3 chr1 139305177 139305480 -103358873 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr1 139305576 139305597 -103358756 + AT_rich Low_complexity Low_complexity 1 21 0 2856 168 60 76 chr1 139305907 139306658 -103357695 + L1MB7 LINE L1 5446 6184 0 1122 147 53 11 chr1 139306752 139306942 -103357411 + MER58A DNA MER1_type 27 224 0 1744 167 22 0 chr1 139307089 139307364 -103356989 + AluJb SINE Alu 1 281 -31 261 0 0 0 chr1 139307367 139307396 -103356957 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1398 134 61 9 chr1 139307589 139307820 -103356533 - Tigger2 DNA MER2_type -15 2703 2461 4021 143 40 14 chr1 139307883 139308355 -103355998 - Tigger2 DNA MER2_type -1961 757 260 1948 107 0 127 chr1 139308355 139308701 -103355652 - AluSx SINE Alu -10 302 1 4021 143 40 14 chr1 139308701 139308932 -103355421 - Tigger2 DNA MER2_type -2458 260 36 3830 180 49 5 chr1 139308945 139309618 -103354735 + MER21B LTR ERV1 58 760 -103 1346 114 0 5 chr1 139309619 139309803 -103354550 - AluSg/x SINE Alu -6 306 124 2408 68 0 7 chr1 139310260 139310555 -103353798 - AluSc SINE Alu -14 295 3 2428 76 0 0 chr1 139310557 139310848 -103353505 - AluSc SINE Alu -18 291 1 293 85 21 0 chr1 139310867 139310914 -103353439 - MADE1 DNA Mariner 0 80 33 582 234 0 0 chr1 139311029 139311140 -103353213 + FLAM_A SINE Alu 2 112 -30 2393 72 7 20 chr1 139311143 139311449 -103352904 - AluY SINE Alu -9 302 1 1822 163 3 3 chr1 139311472 139311760 -103352593 + AluJb SINE Alu 1 288 -24 2317 95 3 3 chr1 139312275 139312579 -103351774 - AluSp SINE Alu -9 304 1 1999 145 0 0 chr1 139312594 139312884 -103351469 - AluSx SINE Alu -22 290 1 1691 178 0 0 chr1 139312884 139313160 -103351193 + AluJb SINE Alu 24 299 -13 965 106 0 56 chr1 139313363 139313476 -103350877 + AluSq/x SINE Alu 1 106 -206 1480 147 117 72 chr1 139313476 139313905 -103350448 + LTR7 LTR ERV1 1 448 -2 965 106 0 56 chr1 139313905 139313933 -103350420 + AluSq/x SINE Alu 106 134 -178 2006 122 10 3 chr1 139313934 139314229 -103350124 + AluSx SINE Alu 1 297 -15 285 219 16 0 chr1 139314764 139314828 -103349525 + (CCCCAG)n Simple_repeat Simple_repeat 5 69 0 2356 101 3 0 chr1 139320312 139320619 -103343734 - AluSp SINE Alu -5 308 1 198 0 0 0 chr1 139320655 139320677 -103343676 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 413 107 0 0 chr1 139320683 139320739 -103343614 - AluSg/x SINE Alu -37 272 217 1311 104 28 0 chr1 139320739 139320921 -103343432 - AluSq SINE Alu -126 187 1 24 32 0 0 chr1 139321655 139321686 -103342667 + AT_rich Low_complexity Low_complexity 1 31 0 1155 113 0 12 chr1 139321982 139322150 -103342203 + AluSg/x SINE Alu 137 302 -10 1966 124 0 40 chr1 139322150 139322449 -103341904 + AluSg SINE Alu 6 292 -18 1820 103 107 0 chr1 139322463 139322724 -103341629 + AluSx SINE Alu 11 299 -13 1297 112 0 0 chr1 139322724 139322893 -103341460 + AluSx SINE Alu 1 169 -143 561 70 0 0 chr1 139322894 139322965 -103341388 + AluSc SINE Alu 218 288 -21 1042 176 23 32 chr1 139323150 139323366 -103340987 - AluJo SINE Alu -17 295 82 2306 105 0 10 chr1 139323513 139323826 -103340527 + AluSg SINE Alu 1 310 0 230 184 184 13 chr1 139323879 139323955 -103340398 + L1MC4 LINE L1 7689 7777 -265 1836 185 0 3 chr1 139324056 139324353 -103340000 + AluJb SINE Alu 1 296 -16 1819 139 62 0 chr1 139324535 139324809 -103339544 + AluSx SINE Alu 1 291 -21 2223 105 0 10 chr1 139325013 139325318 -103339035 + AluSx SINE Alu 1 302 -10 1893 191 0 0 chr1 139325322 139325631 -103338722 + 7SLRNA srpRNA srpRNA 1 309 -11 1874 118 70 0 chr1 139327351 139327623 -103336730 + AluSx SINE Alu 1 291 -21 2004 171 0 0 chr1 139327731 139328041 -103336312 + 7SLRNA srpRNA srpRNA 1 310 -10 2062 116 22 0 chr1 139328242 139328547 -103335806 + AluSx SINE Alu 1 311 0 1039 141 6 0 chr1 139328636 139328792 -103335561 + AluJb SINE Alu 156 312 0 679 167 0 0 chr1 139328805 139328907 -103335446 + FLAM_A SINE Alu 21 122 -20 735 161 0 51 chr1 139328926 139329063 -103335290 - AluSq/x SINE Alu -177 135 6 2110 110 28 0 chr1 139329094 139329384 -103334969 + AluSq SINE Alu 1 298 -15 555 180 40 0 chr1 139329740 139329840 -103334513 + MER58A DNA MER1_type 4 107 -117 1976 136 10 36 chr1 139329842 139330151 -103334202 + AluJo SINE Alu 1 301 -11 838 181 42 0 chr1 139330152 139330326 -103334027 + MER58B DNA MER1_type 155 340 -1 217 183 99 70 chr1 139335795 139335866 -103328487 + L2 LINE L2 3190 3262 -10 510 291 0 0 chr1 139338745 139339001 -103325352 + (TG)n Simple_repeat Simple_repeat 1 256 0 2369 101 0 0 chr1 139339303 139339600 -103324753 + AluSg SINE Alu 1 297 -13 183 318 159 0 chr1 139341715 139341841 -103322512 - MIR3 SINE MIR -22 186 41 1797 152 31 7 chr1 139342684 139342974 -103321379 - AluJo SINE Alu -15 297 1 21 0 0 0 chr1 139345012 139345033 -103319320 + GC_rich Low_complexity Low_complexity 1 21 0 181 121 0 52 chr1 139345216 139345274 -103319079 + (CCCCCG)n Simple_repeat Simple_repeat 3 57 0 217 156 22 22 chr1 139345571 139345616 -103318737 + (CGCGG)n Simple_repeat Simple_repeat 5 49 0 498 290 25 17 chr1 139345849 139346017 -103318336 + MIR SINE MIR 11 174 -63 2564 66 0 0 chr1 139346161 139346464 -103317889 - AluY SINE Alu -8 303 1 2416 90 3 3 chr1 139346518 139346830 -103317523 - AluSp SINE Alu -1 312 1 23 0 0 0 chr1 139346830 139346853 -103317500 + AT_rich Low_complexity Low_complexity 1 23 0 1085 135 0 0 chr1 139346857 139347013 -103317340 + FRAM SINE Alu 1 156 -10 2360 98 0 3 chr1 139347076 139347383 -103316970 - AluSg SINE Alu -4 306 1 559 198 0 0 chr1 139347477 139347568 -103316785 - AluJ/FLAM SINE Alu -220 92 2 2370 107 0 3 chr1 139347930 139348239 -103316114 + AluSx SINE Alu 1 308 -4 807 189 0 0 chr1 139348258 139348390 -103315963 + FLAM_A SINE Alu 1 132 -1 919 139 0 0 chr1 139349204 139349333 -103315020 + FLAM_C SINE Alu 1 129 -14 2282 92 37 0 chr1 139349365 139349659 -103314694 + AluSp SINE Alu 1 305 -8 2303 73 4 0 chr1 139349705 139349979 -103314374 + AluSx SINE Alu 21 295 -17 672 273 23 36 chr1 139350086 139350306 -103314047 - MIR SINE MIR 0 262 46 205 278 204 9 chr1 139350800 139350908 -103313445 + L2 LINE L2 3138 3266 -6 2375 101 3 0 chr1 139351126 139351433 -103312920 + AluSg SINE Alu 1 308 -2 239 122 0 20 chr1 139351549 139351598 -103312755 - MADE1 DNA Mariner -32 48 1 2408 91 7 3 chr1 139351801 139352110 -103312243 - AluSx SINE Alu 0 312 3 2040 118 13 32 chr1 139352176 139352210 -103312143 - AluSx SINE Alu -5 307 274 191 0 103 0 chr1 139352210 139352239 -103312114 + T-rich Low_complexity Low_complexity 2 33 0 2040 118 13 32 chr1 139352239 139352517 -103311836 - AluSx SINE Alu -38 274 1 25 0 0 0 chr1 139352581 139352606 -103311747 + AT_rich Low_complexity Low_complexity 1 25 0 498 282 0 27 chr1 139352637 139352786 -103311567 - MIR SINE MIR -27 235 91 2177 127 3 0 chr1 139352926 139353218 -103311135 + AluSc SINE Alu 1 293 -16 2205 134 0 3 chr1 139353264 139353570 -103310783 - AluSx SINE Alu -5 307 3 2309 101 3 10 chr1 139354007 139354304 -103310049 - AluSq SINE Alu -18 295 1 3085 204 98 41 chr1 139354536 139355949 -103308404 - L1ME1 LINE L1 -9 6157 4688 2086 108 43 20 chr1 139357434 139357739 -103306614 + AluSx SINE Alu 1 312 0 274 276 0 40 chr1 139357787 139357863 -103306490 - MIR SINE MIR 0 262 190 693 294 43 5 chr1 139358309 139358520 -103305833 - MIR SINE MIR -11 251 34 1010 169 11 0 chr1 139359980 139360157 -103304196 - MER58A DNA MER1_type 0 224 46 619 299 26 5 chr1 139360336 139360530 -103303823 - MIR SINE MIR -26 236 39 2002 137 40 0 chr1 139360580 139360879 -103303474 + AluSx SINE Alu 2 312 0 385 327 90 27 chr1 139361198 139361279 -103303074 + MIR SINE MIR 20 94 -168 2274 107 3 22 chr1 139361279 139361598 -103302755 - AluSq SINE Alu 0 313 1 385 327 90 27 chr1 139361598 139361739 -103302614 + MIR SINE MIR 94 256 -6 1043 165 0 0 chr1 139362360 139362524 -103301829 + FAM SINE Alu 1 49 0 1301 208 32 21 chr1 139362677 139362956 -103301397 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr1 139363182 139363204 -103301149 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1725 158 39 7 chr1 139364117 139364239 -103300114 + AluJb SINE Alu 1 118 -194 226 0 0 56 chr1 139364239 139364275 -103300078 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1725 158 39 7 chr1 139364275 139364436 -103299917 + AluJb SINE Alu 118 293 -19 248 221 26 13 chr1 139366017 139366094 -103298259 + L1ME4a LINE L1 6043 6120 -1 2270 132 0 19 chr1 139367316 139367634 -103296719 + AluSx SINE Alu 1 312 0 2232 110 0 13 chr1 139368297 139368607 -103295746 - AluSc SINE Alu -3 306 1 235 242 0 16 chr1 139369673 139369735 -103294618 + A-rich Low_complexity Low_complexity 5 65 0 251 186 0 17 chr1 139369867 139369926 -103294427 + GA-rich Low_complexity Low_complexity 3 60 0 229 293 13 0 chr1 139369934 139370009 -103294344 + A-rich Low_complexity Low_complexity 5 80 0 372 167 26 4 chr1 139371029 139371119 -103293234 - AluJ/FLAM SINE Alu -237 65 1 259 186 0 0 chr1 139371859 139371902 -103292451 + MER5A DNA MER1_type 1 43 -146 2018 145 7 0 chr1 139372171 139372467 -103291886 - AluSx SINE Alu -14 298 1 791 228 18 6 chr1 139372483 139372650 -103291703 + AluJo SINE Alu 121 289 -23 1954 153 0 23 chr1 139372676 139372977 -103291376 + AluSx SINE Alu 1 294 -18 2387 86 0 0 chr1 139372979 139373271 -103291082 + AluSg SINE Alu 1 292 -18 3036 144 21 6 chr1 139373967 139374495 -103289858 - L1MB2 LINE L1 0 6171 5636 2310 97 13 3 chr1 139374507 139374807 -103289546 + AluSc SINE Alu 1 303 -6 2051 105 39 0 chr1 139375541 139375826 -103288527 + AluSq SINE Alu 1 296 -17 1720 180 34 10 chr1 139375894 139376189 -103288164 - AluJb SINE Alu -10 302 1 2530 83 3 0 chr1 139376279 139376591 -103287762 + AluSp SINE Alu 1 313 0 1767 155 83 0 chr1 139376861 139377138 -103287215 + AluJo SINE Alu 1 300 -12 1928 153 45 0 chr1 139377140 139377428 -103286925 + AluSx SINE Alu 1 301 -11 1098 41 0 0 chr1 139377478 139377600 -103286753 + AluSc SINE Alu 16 137 -172 6758 73 16 20 chr1 139377600 139378784 -103285569 + SVA Other Other 1 1266 -120 2820 58 3 0 chr1 139378784 139379113 -103285240 + LTR5 LTR ERVK 1 330 -639 6758 73 16 20 chr1 139379113 139379234 -103285119 + SVA Other Other 1266 1386 0 1460 70 22 0 chr1 139379242 139379427 -103284926 + AluSc SINE Alu 118 306 -3 467 280 85 40 chr1 139379578 139379778 -103284575 + MLT1H LTR MaLR 136 344 -205 2322 99 0 0 chr1 139380356 139380650 -103283703 + AluSq SINE Alu 1 294 -19 229 296 9 37 chr1 139381230 139381338 -103283015 + L1MC4 LINE L1 7352 7456 -586 941 198 0 17 chr1 139381446 139381623 -103282730 - AluJo SINE Alu -17 295 122 1668 172 7 20 chr1 139381633 139381930 -103282423 + AluJb SINE Alu 1 293 -19 2425 96 0 0 chr1 139381932 139382235 -103282118 + AluSq SINE Alu 1 303 -10 215 193 36 60 chr1 139382236 139382319 -103282034 + GA-rich Low_complexity Low_complexity 1 81 0 666 168 0 0 chr1 139382345 139382452 -103281901 - FLAM_C SINE Alu -35 108 2 469 239 171 6 chr1 139382452 139382628 -103281725 + L1ME4a LINE L1 5623 5827 -294 2317 94 0 26 chr1 139382630 139382938 -103281415 + AluY SINE Alu 1 300 -11 1632 204 0 11 chr1 139382977 139383262 -103281091 + AluJo SINE Alu 1 282 -30 2406 84 3 3 chr1 139383516 139383824 -103280529 + AluY SINE Alu 1 308 -3 2283 109 3 6 chr1 139383838 139384151 -103280202 + AluSx SINE Alu 1 312 0 816 154 58 6 chr1 139384173 139384329 -103280024 + FRAM SINE Alu 3 166 -10 435 197 218 0 chr1 139384353 139384495 -103279858 - L1ME4a LINE L1 -3 6118 5946 292 328 26 9 chr1 139384680 139384796 -103279557 + MIR SINE MIR 6 123 -139 224 345 48 30 chr1 139385118 139385283 -103279070 + L2 LINE L2 3145 3312 -1 1775 176 0 23 chr1 139385974 139386280 -103278073 - AluJo SINE Alu -13 299 1 21 36 0 0 chr1 139386424 139386452 -103277901 + AT_rich Low_complexity Low_complexity 1 28 0 1831 164 0 39 chr1 139386702 139387014 -103277339 - AluJb SINE Alu -12 300 1 1881 158 10 0 chr1 139387085 139387376 -103276977 + AluJb SINE Alu 1 294 -18 2645 166 23 56 chr1 139387508 139387573 -103276780 + L1M3 LINE L1 5164 5230 -953 2343 104 0 0 chr1 139387573 139387872 -103276481 - AluSx SINE Alu -12 300 2 2645 166 23 56 chr1 139387872 139387931 -103276422 + L1M3 LINE L1 5230 5289 -894 2217 119 0 3 chr1 139387931 139388241 -103276112 + AluSx SINE Alu 1 309 -3 2645 166 23 56 chr1 139388241 139388584 -103275769 + L1M3 LINE L1 5289 5588 -595 553 168 97 0 chr1 139388584 139388697 -103275656 + FLAM_A SINE Alu 2 125 -8 2645 166 23 56 chr1 139388697 139388885 -103275468 + L1M3 LINE L1 5588 5781 -402 807 233 6 6 chr1 139388886 139389045 -103275308 + AluJo SINE Alu 2 160 -152 228 146 0 62 chr1 139389045 139389093 -103275260 - Alu SINE Alu -139 164 120 282 286 13 0 chr1 139389117 139389194 -103275159 + Tigger5 DNA MER2_type 1 78 -2245 1168 170 66 0 chr1 139389199 139389411 -103274942 + Tigger5 DNA MER2_type 2085 2310 -13 365 298 136 8 chr1 139389548 139389830 -103274523 - L1ME LINE L1 -395 5726 5415 904 148 0 15 chr1 139389951 139390086 -103274267 + FLAM_C SINE Alu 1 133 0 2244 99 0 0 chr1 139390144 139390427 -103273926 + AluSg SINE Alu 17 299 -11 2056 135 28 0 chr1 139390439 139390727 -103273626 + AluSx SINE Alu 1 296 -16 2187 98 47 0 chr1 139390904 139391201 -103273152 + AluSq SINE Alu 1 311 -2 1384 139 10 180 chr1 139391256 139391673 -103272680 - MER7A DNA MER2_type 0 346 3 3713 14 0 31 chr1 139391698 139392204 -103272149 + L1PA2 LINE L1 5724 6155 0 201 74 0 0 chr1 139392241 139392268 -103272085 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr1 139392388 139392409 -103271944 + AT_rich Low_complexity Low_complexity 1 21 0 1357 294 49 48 chr1 139392537 139393104 -103271249 + HAL1 LINE L1 2 569 -1938 1297 195 149 59 chr1 139393104 139393340 -103271013 - HAL1 LINE L1 -714 1793 1580 2339 86 0 3 chr1 139393340 139393630 -103270723 - AluSx SINE Alu -13 299 11 1297 195 149 59 chr1 139393630 139393850 -103270503 - HAL1 LINE L1 -927 1580 1296 235 140 0 40 chr1 139394028 139394078 -103270275 - L1MC4 LINE L1 -1339 6703 6656 2066 136 10 3 chr1 139394281 139394589 -103269764 + AluSx SINE Alu 1 310 -2 956 204 112 88 chr1 139394606 139394900 -103269453 + AluJo SINE Alu 2 302 0 2348 123 91 13 chr1 139394997 139395394 -103268959 + MSTA LTR MaLR 1 428 0 745 195 0 0 chr1 139395531 139395654 -103268699 + FLAM_A SINE Alu 1 123 -10 1441 180 7 65 chr1 139395892 139395977 -103268376 + AluJo SINE Alu 13 101 -211 2471 58 7 13 chr1 139395977 139396285 -103268068 + AluSc SINE Alu 1 306 -3 1441 180 7 65 chr1 139396285 139396493 -103267860 + AluJo SINE Alu 101 289 -23 2269 106 0 0 chr1 139396553 139396856 -103267497 + AluY SINE Alu 1 303 -8 1664 175 13 36 chr1 139396902 139397210 -103267143 - AluJo SINE Alu -11 301 1 667 274 16 11 chr1 139397415 139397601 -103266752 + MIR SINE MIR 6 192 -70 263 318 16 48 chr1 139397723 139397849 -103266504 - L2 LINE L2 0 3313 3192 1786 160 3 33 chr1 139397859 139398166 -103266187 - AluJb SINE Alu -14 298 1 840 107 0 57 chr1 139398252 139398392 -103265961 + FLAM_C SINE Alu 11 142 -1 1873 172 17 3 chr1 139398652 139398954 -103265399 - AluJb SINE Alu -6 306 1 1603 172 7 24 chr1 139399381 139399677 -103264676 + AluJo SINE Alu 1 291 -21 2375 56 0 17 chr1 139399704 139400021 -103264332 + AluY SINE Alu 1 312 0 1813 171 3 3 chr1 139400339 139400632 -103263721 + AluJo SINE Alu 1 293 -19 225 0 0 0 chr1 139400720 139400745 -103263608 + (A)n Simple_repeat Simple_repeat 1 25 0 1385 167 14 38 chr1 139401118 139401406 -103262947 + AluJo SINE Alu 12 292 -20 22 35 0 0 chr1 139401961 139401990 -103262363 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 139402751 139402775 -103261578 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr1 139403120 139403146 -103261207 + GC_rich Low_complexity Low_complexity 1 26 0 2435 64 3 0 chr1 139403682 139403978 -103260375 + AluSq SINE Alu 1 297 -16 2230 99 3 10 chr1 139404324 139404626 -103259727 - AluSx SINE Alu -12 300 1 1412 97 0 0 chr1 139404673 139404858 -103259495 - AluSg/x SINE Alu -1 309 125 636 253 91 0 chr1 139404893 139405079 -103259274 - MIR SINE MIR -38 224 22 21 36 0 0 chr1 139405155 139405183 -103259170 + AT_rich Low_complexity Low_complexity 1 28 0 2275 73 35 0 chr1 139405409 139405698 -103258655 + AluSg SINE Alu 1 299 -11 2304 107 0 13 chr1 139405908 139406217 -103258136 + AluSx SINE Alu 1 305 -7 2150 128 0 0 chr1 139406535 139406825 -103257528 + AluSx SINE Alu 1 290 -22 1938 143 10 10 chr1 139407096 139407404 -103256949 - AluSx SINE Alu -4 308 1 777 183 0 0 chr1 139407456 139407582 -103256771 + FLAM_A SINE Alu 1 126 -7 835 232 0 0 chr1 139407912 139408089 -103256264 - AluJo SINE Alu -14 298 122 530 72 0 0 chr1 139409348 139409417 -103254936 - HY3 scRNA scRNA -32 69 1 344 197 0 0 chr1 139409447 139409518 -103254835 + MER53 DNA DNA 2 72 -117 2242 84 28 0 chr1 139409518 139409803 -103254550 - AluSq SINE Alu -20 293 1 2155 142 0 0 chr1 139410031 139410333 -103254020 + AluSx SINE Alu 3 304 -8 2324 84 0 0 chr1 139411254 139411540 -103252813 + AluSg SINE Alu 1 286 -24 216 0 0 0 chr1 139411543 139411567 -103252786 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 270 0 0 0 chr1 139411583 139411613 -103252740 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2250 103 0 28 chr1 139411713 139412034 -103252319 - AluSx SINE Alu 0 312 1 564 313 14 65 chr1 139412039 139412317 -103252036 + L1MC/D LINE L1 5433 5696 -2112 455 61 0 0 chr1 139412317 139412383 -103251970 + Alu SINE Alu 244 309 0 315 71 0 0 chr1 139412383 139412425 -103251928 + (TA)n Simple_repeat Simple_repeat 2 43 0 243 152 0 0 chr1 139412429 139412475 -103251878 - LTR66 LTR ERVL -171 439 394 1654 127 116 8 chr1 139412591 139412859 -103251494 - AluSg1 SINE Alu -12 297 1 2575 68 0 0 chr1 139412869 139413178 -103251175 - AluY SINE Alu -2 309 1 323 164 0 16 chr1 139413262 139413323 -103251030 - MER5A DNA MER1_type -1 188 129 1105 107 33 0 chr1 139413333 139413483 -103250870 + FAM SINE Alu 8 162 -23 351 0 0 0 chr1 139413484 139413523 -103250830 + (CA)n Simple_repeat Simple_repeat 2 40 0 398 245 75 11 chr1 139413529 139413623 -103250730 - MER5A DNA MER1_type -71 118 19 2296 102 7 0 chr1 139413700 139414004 -103250349 + AluSg SINE Alu 1 306 -4 415 208 0 0 chr1 139414457 139414559 -103249794 - FLAM_A SINE Alu 0 145 44 506 220 38 0 chr1 139415181 139415226 -103249127 + MER69 DNA AcHobo 2382 2424 -102 2275 76 10 17 chr1 139415226 139415528 -103248825 - AluSx SINE Alu -12 300 1 506 220 38 0 chr1 139415528 139415614 -103248739 + MER69 DNA AcHobo 2424 2518 -8 207 0 0 0 chr1 139415698 139415721 -103248632 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1855 126 3 48 chr1 139415721 139416014 -103248339 - AluJo SINE Alu -32 280 1 2318 66 31 0 chr1 139416140 139416426 -103247927 + AluY SINE Alu 3 297 -14 262 253 33 33 chr1 139416973 139417064 -103247289 + L2 LINE L2 2729 2819 -495 278 289 294 28 chr1 139417117 139417505 -103246848 + L3 LINE CR1 1073 1563 -14 2139 110 3 0 chr1 139417505 139417813 -103246540 - AluSp SINE Alu 0 309 1 2520 77 3 0 chr1 139418213 139418523 -103245830 - AluY SINE Alu 0 311 1 184 358 36 29 chr1 139418528 139418665 -103245688 + L2 LINE L2 2692 2829 -485 1621 272 107 45 chr1 139419283 139419533 -103244820 - L1M4 LINE L1 -1200 4946 4713 1927 158 0 16 chr1 139419533 139419849 -103244504 - AluJb SINE Alu -1 311 1 1621 272 107 45 chr1 139419849 139420470 -103243883 - L1M4 LINE L1 -1433 4713 4132 1637 197 7 3 chr1 139420470 139420769 -103243584 - AluJo SINE Alu -12 300 1 1621 272 107 45 chr1 139420769 139420791 -103243562 - L1M4 LINE L1 -2014 4132 4113 1022 47 78 0 chr1 139420791 139420920 -103243433 - MER85 DNA T2_type 0 139 1 1621 272 107 45 chr1 139420920 139420961 -103243392 - L1M4 LINE L1 -2033 4113 3952 556 111 0 71 chr1 139420984 139421083 -103243270 - FLAM_C SINE Alu -6 137 46 284 290 107 0 chr1 139421086 139421217 -103243136 - L1M4 LINE L1 -2208 3938 3794 723 260 11 92 chr1 139421341 139421580 -103242773 - L1M4 LINE L1 -3456 2690 2433 433 149 81 0 chr1 139421580 139421667 -103242686 - L1PB4 LINE L1 0 6156 6063 723 260 11 92 chr1 139421667 139421764 -103242589 - L1M4 LINE L1 -3713 2433 2330 2152 97 17 14 chr1 139421764 139422052 -103242301 + AluSx SINE Alu 1 289 -23 213 39 0 0 chr1 139422053 139422079 -103242274 + (TA)n Simple_repeat Simple_repeat 2 27 0 723 260 11 92 chr1 139422079 139422259 -103242094 - L1M4 LINE L1 -3815 2331 2213 456 266 143 98 chr1 139422278 139422340 -103242013 + LTR67 LTR ERVL 3 61 -496 2124 136 0 16 chr1 139422340 139422657 -103241696 - AluSx SINE Alu 0 312 1 456 266 143 98 chr1 139422657 139423112 -103241241 + LTR67 LTR ERVL 61 543 -14 756 254 32 57 chr1 139423159 139423438 -103240915 + MLT1K LTR MaLR 316 587 -1 202 250 0 0 chr1 139423755 139423803 -103240550 - L2 LINE L2 0 3272 3225 1635 154 18 4 chr1 139424361 139424633 -103239720 - AluJb SINE Alu -36 276 1 497 143 0 0 chr1 139425061 139425138 -103239215 - FLAM SINE Alu -13 130 54 2344 108 0 0 chr1 139425486 139425793 -103238560 + AluSc SINE Alu 1 307 -2 2144 67 0 70 chr1 139425808 139426154 -103238199 + AluY SINE Alu 3 327 0 1450 183 40 18 chr1 139426171 139426444 -103237909 + AluJo SINE Alu 3 281 -31 235 204 0 56 chr1 139426413 139426467 -103237886 + AluJo SINE Alu 85 135 -167 * 409 298 53 42 chr1 139426460 139426683 -103237670 + L1M4 LINE L1 4980 5200 -946 691 200 15 0 chr1 139426686 139426816 -103237537 + FLAM_C SINE Alu 1 132 -1 882 154 24 30 chr1 139426820 139426835 -103237518 + AluSg/x SINE Alu 136 150 -162 5275 93 1 3 chr1 139426835 139427524 -103236829 + LTR12 LTR ERV1 1 688 0 882 154 24 30 chr1 139427524 139427677 -103236676 + AluSg/x SINE Alu 150 303 -9 443 279 39 25 chr1 139427691 139427854 -103236499 + L1M4 LINE L1 5218 5381 -765 1718 145 72 3 chr1 139427860 139428150 -103236203 + AluJb SINE Alu 1 310 -2 2143 204 45 24 chr1 139428150 139428642 -103235711 + L1M4 LINE L1 4376 4881 -1265 2094 87 0 42 chr1 139428642 139428952 -103235401 + AluY SINE Alu 1 297 -14 2143 204 45 24 chr1 139428952 139428994 -103235359 + L1M4 LINE L1 4881 4921 -1225 1875 122 0 11 chr1 139428994 139429130 -103235223 + AluSx SINE Alu 1 134 -178 2131 80 7 20 chr1 139429130 139429430 -103234923 + AluY SINE Alu 1 296 -15 1875 122 0 11 chr1 139429430 139429563 -103234790 + AluSx SINE Alu 134 267 -45 623 231 50 59 chr1 139429567 139429788 -103234565 + L1MC4a LINE L1 6007 6225 -1583 188 35 35 0 chr1 139430490 139430519 -103233834 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 2057 97 3 13 chr1 139430528 139430826 -103233527 + AluSg SINE Alu 1 295 -15 378 0 0 0 chr1 139432073 139432115 -103232238 + (CA)n Simple_repeat Simple_repeat 1 42 0 2006 138 0 7 chr1 139432151 139432456 -103231897 - AluSx SINE Alu -9 303 1 2422 54 0 0 chr1 139432719 139433013 -103231340 + AluY SINE Alu 1 294 -17 1841 148 0 10 chr1 139433024 139433338 -103231015 + AluJo SINE Alu 1 312 0 3975 166 60 32 chr1 139434185 139434715 -103229638 - L1MB8 LINE L1 -9 6169 5655 2465 56 3 0 chr1 139434715 139435018 -103229335 - AluY SINE Alu -7 304 1 1753 160 20 10 chr1 139435021 139435315 -103229038 - AluJb SINE Alu -15 297 1 3975 166 60 32 chr1 139435315 139435645 -103228708 - L1MB8 LINE L1 -524 5654 5281 1187 184 55 44 chr1 139435657 139435929 -103228424 - AluJo SINE Alu -37 275 1 342 135 33 111 chr1 139435929 139435967 -103228386 - L1MB8 LINE L1 -950 5196 5157 2183 73 7 3 chr1 139435967 139436267 -103228086 + AluSx SINE Alu 1 301 -11 342 135 33 111 chr1 139436267 139436280 -103228073 - L1MB8 LINE L1 -989 5157 5145 1620 158 14 30 chr1 139436280 139436577 -103227776 + AluJb SINE Alu 1 292 -20 342 135 33 111 chr1 139436577 139436704 -103227649 - L1MB8 LINE L1 -1001 5145 4964 2177 169 12 34 chr1 139436704 139437117 -103227236 - LOR1b LTR ERV1 0 461 58 2233 98 7 0 chr1 139437131 139437438 -103226915 - AluSx SINE Alu -2 310 2 1240 180 45 48 chr1 139437496 139437640 -103226713 - L1MB8 LINE L1 -1179 4967 4824 2036 105 0 41 chr1 139437640 139437808 -103226545 - AluSx SINE Alu -11 301 150 2259 88 0 3 chr1 139437808 139438114 -103226239 - AluY SINE Alu -6 305 1 2036 105 0 41 chr1 139438114 139438259 -103226094 - AluSx SINE Alu -162 150 1 1240 180 45 48 chr1 139438259 139438403 -103225950 - L1MB8 LINE L1 -1322 4824 4680 1985 122 10 0 chr1 139438449 139438744 -103225609 - AluSx SINE Alu -14 298 1 224 266 125 0 chr1 139439981 139440045 -103224308 + MIR SINE MIR 73 144 -64 386 211 148 37 chr1 139440065 139440202 -103224151 + MLT1B LTR MaLR 19 159 -308 * 662 179 48 12 chr1 139440200 139440349 -103224004 + MLT1B LTR MaLR 273 390 0 2248 92 3 0 chr1 139440403 139440698 -103223655 - AluSq SINE Alu -17 296 1 2136 94 3 3 chr1 139441486 139441783 -103222570 + AluSx SINE Alu 1 297 -15 1431 173 4 19 chr1 139442072 139442338 -103222015 + AluJo SINE Alu 1 262 -50 23 0 0 0 chr1 139442583 139442606 -103221747 + AT_rich Low_complexity Low_complexity 1 23 0 1818 92 58 0 chr1 139442675 139442936 -103221417 + AluY SINE Alu 3 278 -33 724 212 0 7 chr1 139443161 139443307 -103221046 + AluSg/x SINE Alu 154 298 -11 4406 81 14 3 chr1 139443308 139443879 -103220474 + MER41A-int LTR ERV1 5368 5944 -2 2176 77 3 102 chr1 139443879 139443988 -103220365 + MER41A LTR ERV1 1 119 -435 1378 119 133 52 chr1 139443988 139444145 -103220208 - AluY SINE Alu -2 309 166 2554 52 0 0 chr1 139444145 139444453 -103219900 - AluY SINE Alu -3 308 1 1378 119 133 52 chr1 139444453 139444581 -103219772 - AluY SINE Alu -145 166 1 1816 120 50 3 chr1 139444582 139444865 -103219488 - AluSx SINE Alu -16 296 1 2176 77 3 102 chr1 139444865 139445116 -103219237 + MER41A LTR ERV1 118 327 -227 1913 97 50 30 chr1 139445117 139445417 -103218936 + AluY SINE Alu 2 307 -4 213 94 0 0 chr1 139445486 139445518 -103218835 + (TA)n Simple_repeat Simple_repeat 2 33 0 1866 113 3 3 chr1 139445588 139445871 -103218482 - AluSx SINE Alu 0 312 30 508 279 60 67 chr1 139445910 139445964 -103218389 - L1MC4a LINE L1 -1736 6072 6019 2150 123 0 0 chr1 139445964 139446266 -103218087 - AluSx SINE Alu -10 302 1 508 279 60 67 chr1 139446266 139446450 -103217903 - L1MC4a LINE L1 -1789 6019 5836 2290 57 0 3 chr1 139446450 139446732 -103217621 - AluY SINE Alu -17 294 14 508 279 60 67 chr1 139446732 139446894 -103217459 - L1MC4a LINE L1 -1972 5836 5674 404 119 0 0 chr1 139446955 139447014 -103217339 + Alu SINE Alu 236 294 -18 1998 86 54 4 chr1 139447115 139447395 -103216958 + AluSx SINE Alu 1 294 -18 1237 161 150 59 chr1 139447411 139447684 -103216669 + AluJo SINE Alu 1 298 -4 890 285 51 0 chr1 139447695 139447951 -103216402 + MER102b DNA MER1_type 73 341 0 2469 47 0 3 chr1 139448040 139448341 -103216012 + AluY SINE Alu 1 300 -11 1875 107 0 29 chr1 139448415 139448695 -103215658 + AluSx SINE Alu 1 272 -40 876 153 0 0 chr1 139448812 139448943 -103215410 + FLAM_A SINE Alu 1 131 -2 273 262 0 0 chr1 139448943 139449004 -103215349 - MER5A DNA MER1_type -83 106 46 326 320 112 28 chr1 139449256 139449434 -103214919 - L2 LINE L2 -1 3271 3079 680 181 60 82 chr1 139449473 139449619 -103214734 + MER5A DNA MER1_type 1 145 -44 2047 96 7 0 chr1 139449619 139449946 -103214407 + AluSg SINE Alu 1 329 0 680 181 60 82 chr1 139449946 139449980 -103214373 + MER5A DNA MER1_type 145 178 -11 264 290 84 45 chr1 139450164 139450319 -103214034 - L2 LINE L2 -455 2859 2699 2091 102 13 13 chr1 139450395 139450708 -103213645 + AluSp SINE Alu 1 313 0 2113 81 58 3 chr1 139450711 139451006 -103213347 + AluY SINE Alu 1 311 0 1747 111 24 90 chr1 139451051 139451384 -103212969 + AluSx SINE Alu 1 311 -1 974 220 88 18 chr1 139451425 139451652 -103212701 + MIR SINE MIR 11 253 -9 372 289 52 29 chr1 139452011 139452035 -103212318 + L1ME LINE L1 5419 5441 -680 622 248 161 49 chr1 139452035 139452402 -103211951 + MLT1I LTR MaLR 1 408 -1 372 289 52 29 chr1 139452402 139452550 -103211803 + L1ME LINE L1 5441 5595 -526 2238 88 3 0 chr1 139452562 139452859 -103211494 + AluSp SINE Alu 1 298 -15 1724 25 0 0 chr1 139452859 139453057 -103211296 + AluY SINE Alu 1 198 -113 992 158 178 23 chr1 139453057 139453146 -103211207 + AluSx SINE Alu 4 78 -224 1713 97 39 16 chr1 139453146 139453403 -103210950 + AluSq SINE Alu 51 313 0 992 158 178 23 chr1 139453403 139453572 -103210781 + AluSx SINE Alu 78 302 0 2244 103 0 0 chr1 139453573 139453883 -103210470 + AluY SINE Alu 1 310 -1 2202 90 3 13 chr1 139453892 139454203 -103210150 + AluSq SINE Alu 1 308 -5 1928 79 69 17 chr1 139454207 139454498 -103209855 + AluSg SINE Alu 1 306 -4 1253 142 4 64 chr1 139454549 139454830 -103209523 - AluJb SINE Alu -2 310 47 2378 39 23 7 chr1 139454987 139455293 -103209060 - AluY SINE Alu 0 311 1 219 367 0 0 chr1 139455826 139455905 -103208448 + CT-rich Low_complexity Low_complexity 2 80 0 1786 124 18 11 chr1 139456600 139456883 -103207470 - AluJo SINE Alu -22 290 6 1454 122 0 5 chr1 139457522 139457736 -103206617 - AluSg/x SINE Alu -14 296 84 6110 44 27 4 chr1 139458075 139458822 -103205531 - L1PA5 LINE L1 -2 6152 5389 233 29 0 29 chr1 139458822 139458857 -103205496 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1784 140 0 18 chr1 139458858 139459144 -103205209 - AluSx SINE Alu -31 281 1 767 217 45 45 chr1 139459865 139459979 -103204374 - L1M4 LINE L1 -1794 4352 4239 2236 97 0 31 chr1 139459979 139460298 -103204055 - AluSg1 SINE Alu 0 309 1 767 217 45 45 chr1 139460298 139460427 -103203926 - L1M4 LINE L1 -1906 4240 4109 1860 169 0 0 chr1 139460440 139460742 -103203611 + AluJo SINE Alu 1 302 -10 914 174 7 0 chr1 139460856 139461005 -103203348 + AluJb SINE Alu 145 294 -18 213 178 67 0 chr1 139461501 139461546 -103202807 + MER91A DNA MER1_type 20 67 -129 1700 159 17 15 chr1 139461695 139462072 -103202281 + L1M4 LINE L1 5060 5441 -743 2034 89 10 10 chr1 139462072 139462365 -103201988 + AluSc SINE Alu 1 293 -16 2132 142 69 53 chr1 139462371 139462934 -103201419 + L1MB8 LINE L1 5260 5831 -347 1087 153 5 24 chr1 139462935 139463144 -103201209 + AluSx SINE Alu 1 205 -107 237 83 0 0 chr1 139465841 139465877 -103198476 + (A)n Simple_repeat Simple_repeat 1 36 0 417 121 15 0 chr1 139465883 139465949 -103198404 + U4 snRNA snRNA 4 70 -75 2028 71 0 39 chr1 139465987 139466297 -103198056 - AluY SINE Alu -13 298 1 2215 99 0 0 chr1 139469173 139469465 -103194888 - AluSc SINE Alu -12 297 6 907 169 7 7 chr1 139471081 139471235 -103193118 - FRAM SINE Alu -11 155 2 1729 147 6 35 chr1 139471676 139471990 -103192363 - AluSg1 SINE Alu -4 305 1 478 188 102 0 chr1 139471991 139472119 -103192234 - L1M4b LINE L1 -1897 5060 4920 1877 161 0 3 chr1 139472132 139472436 -103191917 + AluJo SINE Alu 1 303 -9 1906 85 0 0 chr1 139472458 139472705 -103191648 + AluY SINE Alu 1 247 -64 590 0 0 0 chr1 139472705 139472826 -103191527 + L1PA2 LINE L1 6082 6202 0 466 93 0 40 chr1 139472826 139472901 -103191452 + AluY SINE Alu 232 303 -9 1138 200 60 30 chr1 139472902 139473237 -103191116 - L1M4b LINE L1 -2052 4905 4561 728 160 7 80 chr1 139473258 139473408 -103190945 + FLAM_C SINE Alu 2 140 -3 741 213 118 23 chr1 139473408 139473629 -103190724 - L1M4b LINE L1 -2413 4544 4303 624 189 270 21 chr1 139473611 139473844 -103190509 - L1MD3 LINE L1 0 7995 7705 * 990 197 66 55 chr1 139473832 139474197 -103190156 - L1M4b LINE L1 -3016 3941 3573 225 0 0 0 chr1 139474197 139474222 -103190131 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1700 175 0 0 chr1 139474231 139474511 -103189842 - AluJo SINE Alu -32 280 1 1828 152 6 35 chr1 139474513 139474828 -103189525 - AluSx SINE Alu -6 306 1 2252 105 3 3 chr1 139474886 139475234 -103189119 - AluSp SINE Alu 0 348 1 235 200 0 36 chr1 139475234 139475253 -103189100 + CT-rich Low_complexity Low_complexity 2 180 0 2343 52 0 3 chr1 139475342 139475630 -103188723 + AluY SINE Alu 1 287 -24 1614 263 105 36 chr1 139475649 139475975 -103188378 - L1M4b LINE L1 -4414 2724 2422 2048 121 3 0 chr1 139475975 139476272 -103188081 - AluSq SINE Alu -15 298 1 1614 263 105 36 chr1 139476272 139477110 -103187243 - L1M4b LINE L1 -4716 2422 1324 2292 62 0 10 chr1 139477140 139477430 -103186923 - AluY SINE Alu -14 297 11 21 36 0 0 chr1 139477448 139477476 -103186877 + AT_rich Low_complexity Low_complexity 1 28 0 558 277 153 7 chr1 139477571 139477845 -103186508 - L1ME3 LINE L1 -270 5900 5587 407 197 30 17 chr1 139477849 139477975 -103186378 - FLAM_A SINE Alu -10 123 3 1985 123 0 0 chr1 139478001 139478286 -103186067 + AluSx SINE Alu 8 292 -20 1436 130 130 49 chr1 139478299 139478623 -103185730 + L1MB2 LINE L1 5776 6125 -46 610 207 0 17 chr1 139478642 139478758 -103185595 + FLAM_A SINE Alu 20 133 -9 2621 153 94 59 chr1 139478758 139479099 -103185254 + L1MB7 LINE L1 5497 5870 -314 1944 123 28 0 chr1 139479099 139479384 -103184969 + AluSg SINE Alu 1 293 -17 2621 153 94 59 chr1 139479384 139479650 -103184703 + L1MB7 LINE L1 5870 6125 -59 2149 93 0 20 chr1 139479653 139479955 -103184398 - AluSx SINE Alu -16 296 1 231 53 0 0 chr1 139479978 139480016 -103184337 - Alu SINE Alu -2 164 127 638 146 19 0 chr1 139480016 139480119 -103184234 + AluSc SINE Alu 153 257 -52 1582 140 0 48 chr1 139480131 139480402 -103183951 - AluSq SINE Alu -54 259 2 239 140 0 35 chr1 139480404 139480461 -103183892 - FAM SINE Alu 0 179 125 2004 134 13 0 chr1 139480469 139480775 -103183578 - AluSx SINE Alu -2 310 1 698 194 24 0 chr1 139480778 139480902 -103183451 - FLAM_A SINE Alu -6 127 1 1994 130 0 7 chr1 139481434 139481734 -103182619 + AluSx SINE Alu 1 298 -14 1905 107 21 14 chr1 139481736 139481866 -103182487 + AluSp SINE Alu 1 129 -184 2005 126 7 0 chr1 139481866 139482160 -103182193 + AluSg SINE Alu 1 296 -14 1905 107 21 14 chr1 139482160 139482319 -103182034 + AluSp SINE Alu 129 292 -21 809 128 8 16 chr1 139482857 139482982 -103181371 + AluJb SINE Alu 2 125 -187 2358 77 0 0 chr1 139483006 139483303 -103181050 + AluSg SINE Alu 1 297 -13 2231 76 0 30 chr1 139483306 139483610 -103180743 + AluSc SINE Alu 1 295 -14 2057 109 3 0 chr1 139484542 139484827 -103179526 + AluSx SINE Alu 2 287 -25 257 289 77 77 chr1 139486451 139486607 -103177746 - L2 LINE L2 -2090 1224 1069 362 173 80 0 chr1 139486729 139486804 -103177549 - MER66A LTR ERV1 -140 338 258 1878 84 84 3 chr1 139486859 139487146 -103177207 - AluSq SINE Alu -3 310 1 2015 122 0 3 chr1 139487858 139488162 -103176191 + AluSx SINE Alu 1 303 -9 2347 62 0 13 chr1 139489795 139490100 -103174253 - AluY SINE Alu -10 301 1 1458 154 66 11 chr1 139490305 139490578 -103173775 + AluSg SINE Alu 1 288 -22 1742 158 10 3 chr1 139490607 139490911 -103173442 + AluJb SINE Alu 5 310 -2 2044 108 11 0 chr1 139492425 139492712 -103171641 + AluSq SINE Alu 1 290 -23 189 0 0 0 chr1 139492717 139492738 -103171615 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1998 121 7 0 chr1 139493019 139493326 -103171027 + AluY SINE Alu 1 309 -2 2310 81 0 0 chr1 139494081 139494377 -103169976 + AluSg SINE Alu 1 296 -14 185 290 14 14 chr1 139495141 139495210 -103169143 + MIR SINE MIR 184 252 -10 610 207 0 17 chr1 139496239 139496355 -103167998 + FLAM_A SINE Alu 20 133 -9 2261 162 76 58 chr1 139496355 139496696 -103167657 + L1MB7 LINE L1 5497 5851 -333 1953 122 28 0 chr1 139496696 139496982 -103167371 + AluSg SINE Alu 1 294 -16 2261 162 76 58 chr1 139496982 139497153 -103167200 + L1MB7 LINE L1 5851 6018 -166 2156 92 0 16 chr1 139497301 139497604 -103166749 - AluSx SINE Alu -14 298 1 234 51 0 0 chr1 139497627 139497666 -103166687 - Alu SINE Alu -1 165 127 690 126 19 0 chr1 139497666 139497769 -103166584 + AluSc SINE Alu 153 257 -52 1582 140 0 48 chr1 139497781 139498052 -103166301 - AluSq SINE Alu -54 259 2 239 140 0 35 chr1 139498055 139498112 -103166241 - FAM SINE Alu 0 179 125 2048 134 10 0 chr1 139498120 139498427 -103165926 - AluSx SINE Alu -2 310 1 698 194 24 0 chr1 139498430 139498554 -103165799 - FLAM_A SINE Alu -6 127 1 1994 130 0 7 chr1 139499086 139499386 -103164967 + AluSx SINE Alu 1 298 -14 1997 110 10 10 chr1 139499388 139499520 -103164833 + AluSp SINE Alu 1 132 -181 2112 118 0 0 chr1 139499520 139499816 -103164537 + AluSg SINE Alu 1 296 -14 1997 110 10 10 chr1 139499816 139499975 -103164378 + AluSp SINE Alu 131 292 -21 809 128 8 16 chr1 139500513 139500638 -103163715 + AluJb SINE Alu 2 125 -187 2358 77 0 0 chr1 139500662 139500959 -103163394 + AluSg SINE Alu 1 297 -13 2231 76 0 30 chr1 139500962 139501266 -103163087 + AluSc SINE Alu 1 295 -14 2065 108 3 0 chr1 139502198 139502484 -103161869 + AluSx SINE Alu 1 287 -25 257 289 77 77 chr1 139504105 139504261 -103160092 - L2 LINE L2 -2090 1224 1069 404 171 66 0 chr1 139504383 139504459 -103159894 - MER66B LTR ERV1 -140 346 266 1913 90 80 3 chr1 139504514 139504802 -103159551 - AluSq SINE Alu -3 310 1 324 0 0 0 chr1 139504802 139504838 -103159515 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1640 178 11 0 chr1 139504838 139505119 -103159234 - AluJb SINE Alu -28 284 1 2095 86 3 36 chr1 139505253 139505555 -103158798 - AluSp SINE Alu -21 292 1 762 163 7 30 chr1 139506123 139506258 -103158095 - FLAM_C SINE Alu 0 133 2 1576 189 3 17 chr1 139506289 139506591 -103157762 + AluJb SINE Alu 1 298 -14 1488 194 17 7 chr1 139506750 139507044 -103157309 + AluJo SINE Alu 1 297 -15 424 118 0 66 chr1 139507044 139507071 -103157282 + MER41A LTR ERV1 398 425 -129 2236 87 3 0 chr1 139507071 139507371 -103156982 - AluSq SINE Alu -12 301 1 424 118 0 66 chr1 139507371 139507419 -103156934 + MER41A LTR ERV1 425 468 -86 1988 128 14 0 chr1 139507530 139507819 -103156534 - AluSx SINE Alu -19 293 1 781 127 14 28 chr1 139508714 139508856 -103155497 + AluSc SINE Alu 157 296 -13 1225 102 10 51 chr1 139508857 139509054 -103155299 - MER41-int LTR ERV1 -851 5095 4907 1018 129 34 0 chr1 139509033 139509145 -103155208 + MER41-int LTR ERV1 5136 5258 -688 * 2312 47 0 0 chr1 139509145 139509420 -103154933 + AluY SINE Alu 24 298 -13 1018 129 34 0 chr1 139509420 139509485 -103154868 + MER41-int LTR ERV1 5258 5319 -627 2043 111 3 3 chr1 139509485 139509783 -103154570 + AluSx SINE Alu 1 298 -14 195 42 0 0 chr1 139509789 139509813 -103154540 + (TA)n Simple_repeat Simple_repeat 1 24 0 312 67 22 0 chr1 139509813 139509858 -103154495 - Charlie1 DNA MER1_type -854 1907 1862 1900 141 0 0 chr1 139509870 139510168 -103154185 - AluSg1 SINE Alu -7 302 5 32 0 0 0 chr1 139510172 139510204 -103154149 + AT_rich Low_complexity Low_complexity 1 32 0 537 199 0 85 chr1 139510204 139510345 -103154008 - FLAM_C SINE Alu -14 129 1 2252 73 10 13 chr1 139510346 139510659 -103153694 - AluSp SINE Alu -1 312 1 2432 66 0 0 chr1 139510666 139510967 -103153386 - AluY SINE Alu -10 301 1 1015 168 15 20 chr1 139511051 139511248 -103153105 + AluJo SINE Alu 105 300 -12 1890 126 0 26 chr1 139511249 139511558 -103152795 + AluSq SINE Alu 1 301 -12 2157 89 3 0 chr1 139511592 139511883 -103152470 - AluSq SINE Alu -21 292 1 300 83 0 0 chr1 139511883 139511931 -103152422 + MER41A LTR ERV1 421 468 -86 1988 128 14 0 chr1 139512042 139512331 -103152022 - AluSx SINE Alu -19 293 1 2308 67 7 3 chr1 139513264 139513563 -103150790 + AluSp SINE Alu 1 300 -13 1669 266 91 49 chr1 139515099 139515184 -103149169 - L2 LINE L2 -469 2845 2765 2220 101 0 0 chr1 139515184 139515480 -103148873 + AluSq SINE Alu 6 301 -12 1669 266 91 49 chr1 139515480 139515911 -103148442 - L2 LINE L2 -549 2765 2284 2258 61 10 29 chr1 139515911 139516221 -103148132 + AluSp SINE Alu 2 305 -8 1669 266 91 49 chr1 139516221 139516461 -103147892 - L2 LINE L2 -1030 2284 2056 1207 147 0 108 chr1 139516461 139516553 -103147800 + AluJo SINE Alu 42 142 -170 1973 124 7 7 chr1 139516553 139516851 -103147502 + AluSq SINE Alu 1 298 -15 2079 121 0 19 chr1 139516856 139517169 -103147184 + AluSx SINE Alu 1 307 -5 2344 68 0 0 chr1 139517169 139517463 -103146890 - AluY SINE Alu -17 294 1 1207 147 0 108 chr1 139517463 139517642 -103146711 + AluJo SINE Alu 144 290 -22 1857 264 122 8 chr1 139517733 139518446 -103145907 + HAL1 LINE L1 1253 2046 -461 771 279 90 54 chr1 139518694 139519117 -103145236 + L2 LINE L2 2851 3288 -25 2104 110 0 10 chr1 139519117 139519417 -103144936 + AluSx SINE Alu 1 297 -15 1978 109 3 14 chr1 139519417 139519709 -103144644 + AluSg SINE Alu 1 290 -20 2328 65 0 0 chr1 139519713 139520020 -103144333 + AluY SINE Alu 4 310 -1 315 220 0 0 chr1 139520863 139521031 -103143322 + C-rich Low_complexity Low_complexity 1 168 0 640 163 0 22 chr1 139521051 139521235 -103143118 + C-rich Low_complexity Low_complexity 1 180 0 475 79 0 0 chr1 139521336 139521399 -103142954 + AluSp/q SINE Alu 238 300 -13 2123 120 3 0 chr1 139521438 139521747 -103142606 - AluY SINE Alu 0 311 2 212 179 0 0 chr1 139521922 139521961 -103142392 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2199 103 7 3 chr1 139522989 139523299 -103141054 + AluSp SINE Alu 6 311 -2 2292 84 0 28 chr1 139523390 139523711 -103140642 + AluSx SINE Alu 1 312 0 2187 88 3 7 chr1 139524569 139524865 -103139488 + AluSx SINE Alu 1 295 -17 1866 136 3 29 chr1 139525366 139525676 -103138677 - AluJb SINE Alu -10 302 1 1773 130 11 4 chr1 139528072 139528341 -103136012 - AluSx SINE Alu -24 288 18 38 22 0 0 chr1 139528457 139528502 -103135851 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr1 139528590 139528613 -103135740 + AT_rich Low_complexity Low_complexity 1 23 0 2118 92 14 3 chr1 139532492 139532784 -103131569 + AluSg SINE Alu 1 295 -15 2115 122 0 0 chr1 139533152 139533447 -103130906 + AluJb SINE Alu 9 303 -9 1670 135 0 83 chr1 139533687 139534013 -103130340 - AluJb SINE Alu -13 299 1 24 32 0 0 chr1 139537562 139537593 -103126760 + GC_rich Low_complexity Low_complexity 1 31 0 21 89 0 0 chr1 139537639 139537695 -103126658 + GC_rich Low_complexity Low_complexity 1 56 0 30 27 0 0 chr1 139537771 139537808 -103126545 + GC_rich Low_complexity Low_complexity 1 37 0 28 0 0 0 chr1 139537922 139537950 -103126403 + GC_rich Low_complexity Low_complexity 1 28 0 188 33 0 33 chr1 139537964 139537994 -103126359 + (CCG)n Simple_repeat Simple_repeat 2 30 0 2405 60 0 0 chr1 139538777 139539077 -103125276 + AluSx SINE Alu 1 300 -12 795 130 7 43 chr1 139539090 139539228 -103125125 + FLAM_C SINE Alu 1 133 0 221 174 0 22 chr1 139539793 139539839 -103124514 + CT-rich Low_complexity Low_complexity 2 46 0 1291 116 53 0 chr1 139539859 139540066 -103124287 - AluJb SINE Alu -84 228 11 2070 125 3 0 chr1 139541052 139541347 -103123006 + AluSx SINE Alu 1 296 -16 2148 113 3 0 chr1 139541347 139541647 -103122706 + AluSx SINE Alu 1 301 -11 264 327 117 19 chr1 139541774 139541882 -103122471 + MIR3 SINE MIR 21 152 -56 2305 94 0 0 chr1 139541882 139542180 -103122173 + AluSg SINE Alu 1 298 -12 264 327 117 19 chr1 139542180 139542233 -103122120 + MIR3 SINE MIR 152 198 -10 683 218 131 19 chr1 139543032 139543238 -103121115 - MIR SINE MIR -32 230 2 697 256 0 11 chr1 139543250 139543321 -103121032 - MER53 DNA DNA 0 189 119 2134 84 0 3 chr1 139543321 139543605 -103120748 + AluSg SINE Alu 9 291 -19 697 256 0 11 chr1 139543605 139543724 -103120629 - MER53 DNA DNA -70 119 1 2263 68 3 16 chr1 139543771 139544078 -103120275 - AluSg SINE Alu -7 303 1 234 0 0 0 chr1 139544086 139544112 -103120241 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 396 53 18 0 chr1 139544119 139544176 -103120177 - L1PB2 LINE L1 -9 6142 6085 630 284 85 42 chr1 139546724 139546960 -103117393 - MIR SINE MIR -10 252 7 1349 194 0 35 chr1 139548075 139548358 -103115995 + AluJb SINE Alu 1 273 -39 234 0 0 0 chr1 139548363 139548389 -103115964 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 252 0 0 0 chr1 139548388 139548416 -103115937 + (CA)n Simple_repeat Simple_repeat 1 28 0 1757 142 17 7 chr1 139548772 139549061 -103115292 - AluJo SINE Alu -20 292 1 242 306 18 18 chr1 139549084 139549195 -103115158 + CT-rich Low_complexity Low_complexity 1 111 0 21 71 0 0 chr1 139550230 139550272 -103114081 + AT_rich Low_complexity Low_complexity 1 42 0 1541 167 53 8 chr1 139550281 139550545 -103113808 + AluJb SINE Alu 1 276 -36 237 33 0 0 chr1 139550547 139550577 -103113776 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 267 31 0 0 chr1 139550576 139550608 -103113745 + (CA)n Simple_repeat Simple_repeat 1 32 0 2137 124 0 0 chr1 139550639 139550938 -103113415 + AluSx SINE Alu 1 299 -13 544 287 122 17 chr1 139551863 139552044 -103112309 - MIR SINE MIR 0 262 63 1977 103 7 30 chr1 139552167 139552468 -103111885 - AluSq SINE Alu -14 299 6 2070 100 0 0 chr1 139552609 139552880 -103111473 + AluSx SINE Alu 5 275 -37 1792 176 0 7 chr1 139553223 139553525 -103110828 + AluJo SINE Alu 1 300 -12 988 178 0 0 chr1 139553571 139553734 -103110619 - AluSg/x SINE Alu -20 290 128 1889 122 47 3 chr1 139553761 139554057 -103110296 + AluSx SINE Alu 1 309 -3 231 36 0 0 chr1 139554125 139554153 -103110200 + (TA)n Simple_repeat Simple_repeat 2 29 0 1567 109 16 4 chr1 139554225 139554472 -103109881 - AluSx SINE Alu 0 312 63 1176 141 0 0 chr1 139554594 139554764 -103109589 - AluSx SINE Alu -142 170 1 2195 107 0 13 chr1 139555081 139555390 -103108963 - AluSx SINE Alu -7 305 1 2166 73 35 0 chr1 139555600 139555889 -103108464 - AluSg SINE Alu -11 299 1 21 36 0 0 chr1 139556115 139556143 -103108210 + AT_rich Low_complexity Low_complexity 1 28 0 675 256 103 0 chr1 139556219 139556422 -103107931 + MIR SINE MIR 22 245 -17 1307 83 0 0 chr1 139556440 139556608 -103107745 + AluSg/x SINE Alu 127 294 -18 1822 135 0 28 chr1 139557109 139557418 -103106935 - AluJb SINE Alu 0 301 1 563 203 21 35 chr1 139559427 139559570 -103104783 + AluSg/x SINE Alu 154 294 -18 2105 83 3 29 chr1 139559578 139559925 -103104428 + AluY SINE Alu 1 311 0 2246 100 0 0 chr1 139559945 139560255 -103104098 - AluSg SINE Alu 0 310 1 1517 134 0 0 chr1 139560255 139560479 -103103874 - AluSc SINE Alu -4 305 82 2338 90 0 0 chr1 139560486 139560787 -103103566 - AluSx SINE Alu -11 301 1 2021 131 3 0 chr1 139560988 139561279 -103103074 + AluSx SINE Alu 1 292 -20 1473 142 9 0 chr1 139561293 139561519 -103102834 + AluSx SINE Alu 46 273 -39 1944 121 7 4 chr1 139562029 139562333 -103102020 - AluSx SINE Alu 0 305 1 2327 93 3 0 chr1 139562345 139562657 -103101696 - AluSq SINE Alu 0 313 1 2231 96 0 0 chr1 139563535 139563826 -103100527 + AluSg SINE Alu 1 291 -19 285 29 0 0 chr1 139564765 139564799 -103099554 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2217 111 7 0 chr1 139564844 139565151 -103099202 + AluSx SINE Alu 1 309 -3 2175 88 7 3 chr1 139565271 139565566 -103098787 - AluSq SINE Alu -17 296 1 2252 78 0 7 chr1 139567083 139567376 -103096977 - AluY SINE Alu -18 293 3 1206 294 45 9 chr1 139567692 139568025 -103096328 + MLT1I LTR MaLR 60 404 -5 395 169 110 110 chr1 139568373 139568527 -103095826 - L2 LINE L2 0 3313 3160 333 162 319 0 chr1 139568863 139568954 -103095399 - AluSp SINE Alu -122 181 121 1615 153 0 48 chr1 139569505 139569799 -103094554 - AluJo SINE Alu -18 294 15 501 272 56 6 chr1 139570122 139570284 -103094069 - MIR3 SINE MIR -3 205 36 225 290 0 14 chr1 139571711 139571780 -103092573 + GA-rich Low_complexity Low_complexity 1 68 0 22 70 0 0 chr1 139572271 139572314 -103092039 + AT_rich Low_complexity Low_complexity 1 43 0 699 139 9 17 chr1 139572316 139572431 -103091922 - FLAM_C SINE Alu -27 116 3 2382 100 3 3 chr1 139572636 139572945 -103091408 - AluSp SINE Alu -4 309 1 1986 134 0 3 chr1 139573170 139573502 -103090851 + AluSx SINE Alu 1 331 0 207 170 64 0 chr1 139573750 139573797 -103090556 + CT-rich Low_complexity Low_complexity 1 50 0 2357 105 3 3 chr1 139573878 139574191 -103090162 + AluSq SINE Alu 1 313 0 2373 96 0 0 chr1 139575933 139576235 -103088118 + AluSc SINE Alu 3 304 -5 196 278 156 28 chr1 139576677 139576857 -103087496 - L2 LINE L2 -786 2528 2326 1514 181 72 7 chr1 139578799 139579091 -103085262 - AluJo SINE Alu -1 311 1 2115 112 60 0 chr1 139579380 139579665 -103084688 - AluSx SINE Alu -10 302 1 23 0 0 0 chr1 139580470 139580493 -103083860 + AT_rich Low_complexity Low_complexity 1 23 0 2471 78 0 0 chr1 139580493 139580786 -103083567 - AluSc SINE Alu -16 293 1 523 170 85 9 chr1 139581062 139581168 -103083185 - MER94 DNA DNA -18 116 3 526 194 115 61 chr1 139581410 139581481 -103082872 - MIR SINE MIR -49 213 147 2110 99 38 7 chr1 139581481 139581774 -103082579 - AluSx SINE Alu -10 302 1 526 194 115 61 chr1 139581774 139581867 -103082486 - MIR SINE MIR -115 147 40 2455 74 0 0 chr1 139582695 139582991 -103081362 - AluY SINE Alu -15 296 1 1052 110 52 12 chr1 139583449 139583622 -103080731 + MER20 DNA MER1_type 1 180 -39 2146 117 3 28 chr1 139583622 139583758 -103080595 + AluJb SINE Alu 1 139 -173 2233 88 10 20 chr1 139583758 139584063 -103080290 + AluSx SINE Alu 1 302 -10 2544 76 0 0 chr1 139584064 139584365 -103079988 + AluSg SINE Alu 1 301 -9 2146 117 3 28 chr1 139584365 139584543 -103079810 + AluJb SINE Alu 138 309 -3 2398 78 0 3 chr1 139585495 139585789 -103078564 + AluSc SINE Alu 3 295 -14 406 208 85 15 chr1 139585961 139586091 -103078262 + L1ME3A LINE L1 6021 6159 -11 1847 171 3 10 chr1 139586221 139586519 -103077834 + AluJb SINE Alu 1 296 -16 1356 107 34 0 chr1 139586519 139586696 -103077657 + AluSx SINE Alu 40 222 -90 1017 177 0 18 chr1 139587092 139587256 -103077097 - FRAM SINE Alu -5 161 1 2172 112 14 0 chr1 139587293 139587587 -103076766 + AluSp SINE Alu 1 298 -15 1292 120 0 93 chr1 139587807 139588140 -103076213 + AluSx SINE Alu 1 302 -10 2531 80 0 0 chr1 139588141 139588442 -103075911 + AluSg SINE Alu 1 301 -9 1085 125 6 6 chr1 139588442 139588602 -103075751 + AluJb SINE Alu 134 293 -19 1703 167 39 0 chr1 139588760 139589042 -103075311 + AluSx SINE Alu 1 293 -19 324 226 49 49 chr1 139589132 139589234 -103075119 + MIR SINE MIR 143 244 -18 2308 112 0 3 chr1 139589292 139589597 -103074756 - AluSq SINE Alu -9 304 1 1652 66 5 0 chr1 139589674 139589870 -103074483 + AluSp SINE Alu 1 197 -116 1328 165 116 21 chr1 139590266 139590551 -103073802 + AluJb SINE Alu 1 312 0 392 321 58 37 chr1 139590713 139590903 -103073450 + MIR SINE MIR 8 201 -61 2368 92 0 0 chr1 139591558 139591850 -103072503 + AluSx SINE Alu 1 292 -20 1484 161 27 15 chr1 139592073 139592334 -103072019 + AluJb SINE Alu 2 265 -47 811 130 23 15 chr1 139592637 139592768 -103071585 - AluSq/x SINE Alu -180 132 1 1009 175 6 0 chr1 139592797 139592957 -103071396 + AluSg/x SINE Alu 132 292 -20 1909 176 0 7 chr1 139593003 139593305 -103071048 - AluJo SINE Alu -12 300 1 2188 100 0 0 chr1 139593648 139593919 -103070434 - AluSx SINE Alu -37 275 5 1818 125 8 4 chr1 139594053 139594309 -103070044 + AluSq SINE Alu 1 257 -56 658 138 0 0 chr1 139594767 139594861 -103069492 - AluJ/FLAM SINE Alu -216 96 3 2367 101 7 0 chr1 139594938 139595244 -103069109 + AluSx SINE Alu 1 308 -4 980 127 0 8 chr1 139595244 139595378 -103068975 + AluJb SINE Alu 1 133 -179 2442 80 0 0 chr1 139595382 139595681 -103068672 + AluSg SINE Alu 1 299 -11 398 267 29 0 chr1 139595951 139596056 -103068297 - MIR SINE MIR -77 185 78 221 283 0 0 chr1 139596655 139596708 -103067645 - MIR3 SINE MIR -10 198 146 2110 105 14 7 chr1 139596708 139597003 -103067350 - AluSg SINE Alu -12 298 2 186 43 0 0 chr1 139597009 139597032 -103067321 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1920 120 25 0 chr1 139597043 139597319 -103067034 - AluSx SINE Alu -29 283 1 1441 140 8 24 chr1 139597388 139597638 -103066715 - AluSx SINE Alu -20 292 47 290 343 48 0 chr1 139601541 139601687 -103062666 - MIR3 SINE MIR 0 208 56 2487 73 10 0 chr1 139602858 139603159 -103061194 + AluY SINE Alu 1 304 -7 2035 117 7 7 chr1 139603462 139603743 -103060610 + AluSx SINE Alu 1 281 -31 295 83 21 21 chr1 139603869 139603917 -103060436 - AluSx SINE Alu -253 49 2 191 291 221 0 chr1 139603941 139604027 -103060326 - MIR SINE MIR -83 125 21 2280 113 3 0 chr1 139604154 139604454 -103059899 - AluSx SINE Alu -11 301 1 2151 125 3 3 chr1 139604456 139604751 -103059602 - AluSx SINE Alu -17 295 1 1296 121 58 5 chr1 139605735 139605942 -103058411 + AluJb SINE Alu 11 228 -84 221 174 0 22 chr1 139605962 139606008 -103058345 + GA-rich Low_complexity Low_complexity 2 46 0 915 128 0 39 chr1 139606828 139606984 -103057369 + AluSp/q SINE Alu 158 307 -6 603 201 188 17 chr1 139606993 139607095 -103057258 - Charlie1 DNA MER1_type -217 2544 2461 2153 128 0 7 chr1 139607095 139607399 -103056954 - AluSx SINE Alu -8 304 3 603 201 188 17 chr1 139607399 139607530 -103056823 - Charlie1 DNA MER1_type -300 2461 2271 2492 103 0 0 chr1 139607531 139607841 -103056512 - AluSx SINE Alu -2 310 1 2385 91 0 25 chr1 139607854 139608173 -103056180 - AluY SINE Alu 0 311 1 1648 156 0 0 chr1 139608207 139608444 -103055909 + AluJo SINE Alu 50 286 -26 2180 83 9 58 chr1 139608855 139609180 -103055173 - AluSx SINE Alu -3 309 1 1655 122 37 48 chr1 139609673 139609968 -103054385 + AluJb SINE Alu 1 292 -20 2149 103 0 3 chr1 139609970 139610252 -103054101 + AluSq SINE Alu 1 281 -32 207 0 0 0 chr1 139610252 139610275 -103054078 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 215 232 0 0 chr1 139610300 139610356 -103053997 + T-rich Low_complexity Low_complexity 1 56 0 1550 172 18 25 chr1 139610422 139610701 -103053652 - AluJo SINE Alu -8 304 28 181 333 0 0 chr1 139610805 139610856 -103053497 + MIR SINE MIR 212 262 0 1746 150 34 20 chr1 139611049 139611342 -103053011 - AluJb SINE Alu -15 297 1 454 299 57 6 chr1 139611401 139611558 -103052795 + MIR SINE MIR 3 167 -95 2263 138 0 0 chr1 139611818 139612129 -103052224 + AluSx SINE Alu 1 311 -1 683 103 0 86 chr1 139612149 139612265 -103052088 + AluJo SINE Alu 27 132 -180 994 84 0 15 chr1 139612285 139612416 -103051937 + AluSq/x SINE Alu 1 129 -183 192 359 11 33 chr1 139612710 139612802 -103051551 - L2 LINE L2 -670 2644 2555 870 239 0 0 chr1 139612898 139613074 -103051279 + FRAM SINE Alu 1 174 -2 1948 166 3 3 chr1 139613139 139613441 -103050912 + AluSx SINE Alu 1 302 -10 240 293 0 0 chr1 139613441 139613499 -103050854 + MIR3 SINE MIR 142 199 -9 2021 108 42 10 chr1 139613921 139614209 -103050144 - AluSx SINE Alu -15 297 1 2055 127 17 17 chr1 139614299 139614599 -103049754 - AluSq SINE Alu -13 300 1 205 327 105 38 chr1 139614782 139615048 -103049305 + L2 LINE L2 2573 2856 -458 365 312 94 72 chr1 139615452 139615492 -103048861 + L2 LINE L2 2708 2746 -526 1910 164 0 7 chr1 139615492 139615796 -103048557 + AluSx SINE Alu 1 302 -10 365 312 94 72 chr1 139615796 139616322 -103048031 + L2 LINE L2 2746 3270 -2 2202 125 3 0 chr1 139617149 139617452 -103046901 - AluJb SINE Alu -8 304 1 2402 101 3 0 chr1 139617515 139617821 -103046532 - AluSq SINE Alu -1 312 6 2298 104 0 3 chr1 139618312 139618611 -103045742 - AluSc SINE Alu -11 298 1 272 158 0 105 chr1 139618850 139618926 -103045427 - FLAM_A SINE Alu 0 133 66 2300 70 30 0 chr1 139618926 139619224 -103045129 + AluY SINE Alu 1 307 -4 2225 121 0 0 chr1 139619253 139619558 -103044795 - AluSg SINE Alu -5 305 1 1572 138 0 0 chr1 139619558 139619782 -103044571 - AluSc SINE Alu -4 305 82 2467 90 0 0 chr1 139619789 139620090 -103044263 - AluSx SINE Alu -11 301 1 2142 111 3 7 chr1 139620292 139620590 -103043763 + AluSx SINE Alu 1 297 -15 1051 172 30 63 chr1 139620879 139621147 -103043206 + AluJb SINE Alu 1 259 -53 222 266 0 31 chr1 139622655 139622719 -103041634 + CT-rich Low_complexity Low_complexity 1 62 0 387 0 0 0 chr1 139623085 139623128 -103041225 + (TG)n Simple_repeat Simple_repeat 2 44 0 1013 154 6 0 chr1 139623128 139623284 -103041069 - FRAM SINE Alu -21 155 1 2323 54 41 3 chr1 139623289 139623583 -103040770 - AluSq SINE Alu -8 305 1 235 300 100 27 chr1 139625905 139626015 -103038338 + MIR SINE MIR 35 152 -56 447 115 16 0 chr1 139626691 139626752 -103037601 + AluSx SINE Alu 2 63 -255 1359 175 0 12 chr1 139626853 139627093 -103037260 + AluSx SINE Alu 64 300 -12 2179 116 10 3 chr1 139627143 139627437 -103036916 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr1 139628225 139628251 -103036102 + AT_rich Low_complexity Low_complexity 1 26 0 2087 83 14 42 chr1 139628632 139628921 -103035432 - AluY SINE Alu -30 281 1 409 220 55 0 chr1 139628921 139629012 -103035341 - Charlie1a DNA MER1_type -987 468 373 296 103 0 0 chr1 139629019 139629058 -103035295 + Alu SINE Alu 6 44 -258 1976 140 10 7 chr1 139629133 139629426 -103034927 + AluJb SINE Alu 1 294 -18 1613 203 47 19 chr1 139629426 139629790 -103034563 - Charlie1a DNA MER1_type -1073 382 9 1150 168 0 0 chr1 139629839 139630012 -103034341 - AluJb SINE Alu -15 297 125 824 108 0 0 chr1 139630112 139630214 -103034139 - FLAM_C SINE Alu -37 106 5 1570 165 94 0 chr1 139630227 139630493 -103033860 - AluJo SINE Alu -21 291 1 446 211 303 0 chr1 139630616 139630758 -103033595 - MIR SINE MIR -66 196 12 249 33 0 0 chr1 139632054 139632084 -103032269 + (A)n Simple_repeat Simple_repeat 1 30 0 180 280 136 64 chr1 139632299 139632424 -103031929 + MER5B DNA MER1_type 23 156 -22 459 135 14 0 chr1 139632780 139632854 -103031499 + MER20 DNA MER1_type 3 77 -142 2080 84 56 11 chr1 139634103 139634389 -103029964 + AluSq SINE Alu 1 299 -14 854 174 0 7 chr1 139635030 139635174 -103029179 - FLAM_C SINE Alu 0 143 1 2213 99 0 20 chr1 139635325 139635628 -103028725 - AluSx SINE Alu -15 297 1 183 336 99 30 chr1 139635647 139635778 -103028575 + L2 LINE L2 3158 3297 -16 1876 109 0 23 chr1 139636116 139636427 -103027926 + AluSg SINE Alu 21 325 0 576 246 73 109 chr1 139637602 139637711 -103026642 + MIR SINE MIR 31 130 -132 2204 134 0 0 chr1 139637711 139638017 -103026336 - AluJb SINE Alu -6 306 1 576 246 73 109 chr1 139638017 139638127 -103026226 + MIR SINE MIR 130 242 -20 1635 143 4 43 chr1 139638208 139638487 -103025866 - AluJb SINE Alu -44 268 1 2363 75 7 19 chr1 139638714 139639022 -103025331 + AluSg SINE Alu 1 304 -6 2337 66 42 0 chr1 139639023 139639311 -103025042 + AluY SINE Alu 3 302 -9 2446 50 7 10 chr1 139640691 139640992 -103023361 - AluSc SINE Alu -9 300 1 329 235 133 20 chr1 139640993 139641091 -103023262 + MIR SINE MIR 44 152 -56 1073 92 0 0 chr1 139641973 139642104 -103022249 - AluSq/x SINE Alu -182 131 1 21 36 0 0 chr1 139642110 139642138 -103022215 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr1 139642182 139642210 -103022143 + (A)n Simple_repeat Simple_repeat 1 28 0 2029 117 7 14 chr1 139642210 139642491 -103021862 - AluSg SINE Alu -31 279 1 1477 161 23 69 chr1 139642500 139642805 -103021548 - AluJo SINE Alu -21 291 1 2537 76 0 0 chr1 139642815 139643119 -103021234 - AluSc SINE Alu -5 304 1 24 63 0 16 chr1 139643119 139643149 -103021204 + AT_rich Low_complexity Low_complexity 1 30 -32 731 176 0 8 chr1 139643149 139643268 -103021085 - FLAM_C SINE Alu -15 118 1 24 63 0 16 chr1 139643268 139643300 -103021053 + AT_rich Low_complexity Low_complexity 30 62 0 1220 155 71 18 chr1 139643302 139643528 -103020825 - AluJb SINE Alu -11 301 64 291 209 35 0 chr1 139644262 139644348 -103020005 + (TA)n Simple_repeat Simple_repeat 2 90 0 229 100 0 0 chr1 139644537 139644567 -103019786 - Tigger5 DNA MER2_type 0 2323 2294 226 190 13 127 chr1 139644538 139644617 -103019736 + Tigger5 DNA MER2_type 2242 2311 -12 * 2379 96 3 0 chr1 139644759 139645062 -103019291 - AluSq SINE Alu -4 309 6 1895 107 76 0 chr1 139645102 139645364 -103018989 - AluSx SINE Alu -30 282 1 2373 97 0 10 chr1 139645440 139645740 -103018613 + AluSx SINE Alu 1 297 -15 506 200 33 33 chr1 139646476 139646596 -103017757 - AluSq/x SINE Alu -192 121 2 223 328 0 0 chr1 139646596 139646657 -103017696 - MIR SINE MIR -55 153 93 1967 150 19 3 chr1 139646885 139647192 -103017161 + AluSx SINE Alu 1 312 0 1537 184 62 17 chr1 139647621 139647909 -103016444 + AluJo SINE Alu 5 305 -7 2320 108 7 3 chr1 139648192 139648498 -103015855 + AluSq SINE Alu 6 312 -1 335 40 20 0 chr1 139648664 139648714 -103015639 + AluSp/q SINE Alu 249 299 -4 576 265 139 6 chr1 139648835 139649001 -103015352 + MIR SINE MIR 63 250 -12 2214 123 0 7 chr1 139649940 139650241 -103014112 - AluSx SINE Alu -13 299 1 285 29 0 0 chr1 139650272 139650306 -103014047 + (TG)n Simple_repeat Simple_repeat 1 34 0 237 33 0 0 chr1 139650305 139650335 -103014018 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1643 167 53 8 chr1 139650337 139650601 -103013752 - AluJb SINE Alu -36 276 1 21 71 0 0 chr1 139650610 139650652 -103013701 + AT_rich Low_complexity Low_complexity 1 42 0 242 306 18 18 chr1 139651687 139651798 -103012555 + GA-rich Low_complexity Low_complexity 1 111 0 2103 141 3 0 chr1 139651828 139652125 -103012228 + AluJb SINE Alu 9 306 -6 1781 135 0 83 chr1 139652365 139652691 -103011662 - AluJb SINE Alu -13 299 1 705 115 10 0 chr1 139655421 139655525 -103008828 - AluSp/q SINE Alu -4 309 205 207 0 0 0 chr1 139655532 139655555 -103008798 + (TG)n Simple_repeat Simple_repeat 2 24 0 984 84 0 0 chr1 139655555 139655674 -103008679 - AluSq/x SINE Alu -188 124 6 593 167 83 33 chr1 139655680 139655800 -103008553 - FRAM SINE Alu -16 160 35 2285 94 13 3 chr1 139655820 139656119 -103008234 - AluSq SINE Alu -11 302 1 2464 50 13 7 chr1 139656126 139656425 -103007928 - AluY SINE Alu -10 301 1 35 0 0 0 chr1 139656425 139656460 -103007893 + AT_rich Low_complexity Low_complexity 1 35 0 675 137 0 0 chr1 139656460 139656562 -103007791 - U6 snRNA snRNA -5 102 1 640 309 29 83 chr1 139656562 139657141 -103007212 - L2 LINE L2 -250 3022 2468 2546 73 0 0 chr1 139657147 139657450 -103006903 + AluSg SINE Alu 2 304 -6 2376 78 3 23 chr1 139657610 139657916 -103006437 + AluSg SINE Alu 2 301 -9 1890 91 0 8 chr1 139657973 139658215 -103006138 + AluSq SINE Alu 55 294 -19 369 239 101 82 chr1 139658773 139658932 -103005421 + MIR3 SINE MIR 37 198 -10 1217 106 18 0 chr1 139659450 139659620 -103004733 - AluSg/x SINE Alu -14 298 126 594 100 0 0 chr1 139659720 139659800 -103004553 + AluSp/q SINE Alu 221 300 -13 216 97 0 0 chr1 139660159 139660190 -103004163 + (T)n Simple_repeat Simple_repeat 1 31 0 1711 86 0 5 chr1 139660200 139660410 -103003943 - AluSq SINE Alu -104 209 1 732 269 206 13 chr1 139660732 139660900 -103003453 + L2 LINE L2 2517 2651 -621 1452 184 92 3 chr1 139660900 139661071 -103003282 - AluJb SINE Alu -4 308 101 378 107 0 0 chr1 139661071 139661127 -103003226 + (TG)n Simple_repeat Simple_repeat 2 57 0 1452 184 92 3 chr1 139661127 139661238 -103003115 - AluJb SINE Alu -211 101 1 732 269 206 13 chr1 139661238 139661516 -103002837 + L2 LINE L2 2651 3070 -202 1035 151 0 0 chr1 139661550 139661731 -103002622 - AluSg/x SINE Alu 0 310 130 221 0 0 33 chr1 139661731 139661761 -103002592 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2196 89 11 0 chr1 139661761 139662043 -103002310 - AluSq SINE Alu -28 285 1 438 186 0 0 chr1 139662609 139662679 -103001674 + FRAM/FAM SINE Alu 1 69 -107 965 108 14 20 chr1 139662686 139662834 -103001519 - AluY SINE Alu -8 303 157 1936 105 24 90 chr1 139663176 139663509 -103000844 - AluSx SINE Alu -1 311 1 2200 85 58 3 chr1 139663554 139663849 -103000504 - AluY SINE Alu 0 311 1 427 204 124 9 chr1 139665256 139665369 -102998984 + MIR3 SINE MIR 42 167 -41 2261 95 0 83 chr1 139666163 139666501 -102997852 - AluSp SINE Alu -3 310 1 1101 209 17 0 chr1 139868223 139868453 -102795900 + L1M4 LINE L1 4837 5070 -1076 1224 266 102 17 chr1 139868455 139868977 -102795376 - L1M4 LINE L1 -1074 5072 4507 342 313 121 14 chr1 139868977 139869221 -102795132 + L2 LINE L2 2731 2999 -314 356 164 0 0 chr1 139869227 139869268 -102795085 - MER4D LTR ERV1 -42 861 818 1873 103 0 0 chr1 139869268 139869531 -102794822 + AluSx SINE Alu 44 306 -6 356 164 0 0 chr1 139869531 139869544 -102794809 - MER4D LTR ERV1 -84 819 807 2779 147 31 12 chr1 139869830 139870312 -102794041 + MER4E LTR ERV1 1 491 -288 1693 246 21 41 chr1 139870814 139871281 -102793072 - LTR16B LTR ERVL 0 464 7 1432 318 110 38 chr1 139871405 139872470 -102791883 - ERVL LTR ERVL -381 5383 4242 3709 164 102 53 chr1 139872473 139873569 -102790784 + MER11B LTR ERVK 1 1236 0 2401 317 61 37 chr1 139873575 139874911 -102789442 - ERVL LTR ERVL -1455 4199 2832 216 216 0 0 chr1 139875795 139875846 -102788507 + (CA)n Simple_repeat Simple_repeat 2 52 0 302 198 99 54 chr1 139876227 139876338 -102788015 - MIR3 SINE MIR -78 130 15 819 195 7 0 chr1 139876367 139876521 -102787832 - AluJo SINE Alu -155 157 3 323 319 31 44 chr1 139876874 139877034 -102787319 - MIR SINE MIR 0 262 105 1135 54 60 0 chr1 139877038 139877187 -102787166 + AluY SINE Alu 2 159 -152 684 69 0 0 chr1 139877187 139877274 -102787079 + AluSg/x SINE Alu 209 295 -17 300 274 39 10 chr1 139877280 139877382 -102786971 - MIR SINE MIR -155 107 3 1649 183 0 13 chr1 139877659 139877965 -102786388 + AluJo SINE Alu 1 302 -10 1796 219 74 36 chr1 139878016 139878091 -102786262 + MER69 DNA AcHobo 1908 1979 -547 1564 174 17 7 chr1 139878091 139878384 -102785969 + AluJb SINE Alu 1 296 -16 1796 219 74 36 chr1 139878384 139878892 -102785461 + MER69 DNA AcHobo 1979 2513 -13 340 321 0 0 chr1 139878946 139879052 -102785301 + L2 LINE L2 2950 3055 -217 227 277 0 84 chr1 139879301 139879384 -102784969 + MIR SINE MIR 74 149 -59 811 217 15 98 chr1 139880299 139880535 -102783818 + MIR SINE MIR 2 223 -39 414 314 20 20 chr1 139880544 139880697 -102783656 + L2 LINE L2 3161 3313 0 344 203 0 0 chr1 139880796 139880855 -102783498 - L2 LINE L2 -1 3312 3254 201 254 0 34 chr1 139880951 139881010 -102783343 + (CCCCAG)n Simple_repeat Simple_repeat 1 57 0 3785 274 102 82 chr1 139881061 139882333 -102782020 - HAL1 LINE L1 -1 2506 1261 1935 141 3 0 chr1 139882333 139882623 -102781730 - AluSx SINE Alu -21 291 1 3785 274 102 82 chr1 139882623 139882787 -102781566 - HAL1 LINE L1 -1246 1261 1102 501 32 16 0 chr1 139882787 139882850 -102781503 + AluSp/q SINE Alu 232 295 -18 3785 274 102 82 chr1 139882850 139883054 -102781299 - HAL1 LINE L1 -1405 1102 904 471 186 127 17 chr1 139883054 139883172 -102781181 - FLAM_A SINE Alu -2 131 1 3785 274 102 82 chr1 139883172 139883596 -102780757 - HAL1 LINE L1 -1603 904 336 681 249 25 72 chr1 139883653 139883775 -102780578 + MIR SINE MIR 37 144 -118 2066 113 0 17 chr1 139883775 139884075 -102780278 + AluSx SINE Alu 1 295 -17 681 249 25 72 chr1 139884075 139884189 -102780164 + MIR SINE MIR 144 262 0 518 155 10 62 chr1 139884319 139884416 -102779937 + MER81 DNA DNA 22 113 -1 236 337 0 0 chr1 139884759 139884842 -102779511 + L2 LINE L2 3189 3271 -1 620 164 75 50 chr1 139885505 139885664 -102778689 - LTR36 LTR ERV1 -448 163 1 605 258 13 13 chr1 139885686 139885841 -102778512 - MLT1D LTR MaLR -246 259 105 266 267 125 0 chr1 139887089 139887209 -102777144 + L1 LINE L1 4304 4438 -1708 231 288 40 40 chr1 139887462 139887587 -102776766 + L1 LINE L1 4887 5011 -1135 1868 122 0 4 chr1 139887604 139887883 -102776470 + AluSq SINE Alu 1 278 -35 849 174 0 0 chr1 139888027 139888165 -102776188 + FRAM SINE Alu 9 146 -30 391 175 0 0 chr1 139888192 139888255 -102776098 - AluSg/x SINE Alu -54 248 186 342 209 55 11 chr1 139888257 139888348 -102776005 - L1M4 LINE L1 -1048 5098 5004 276 167 115 21 chr1 139888584 139888680 -102775673 + L1MA4 LINE L1 5930 6034 -266 * 1241 139 25 147 chr1 139888673 139889041 -102775312 + L1MA4 LINE L1 5967 6289 -11 411 161 269 0 chr1 139889056 139889149 -102775204 - MER66A LTR ERV1 -77 401 284 445 273 61 8 chr1 139889608 139889740 -102774613 + MIR SINE MIR 14 152 -110 2332 72 0 0 chr1 139889747 139890037 -102774316 + AluSx SINE Alu 1 290 -22 984 231 0 15 chr1 139890038 139890237 -102774116 - MIR SINE MIR -54 208 13 239 70 0 100 chr1 139890337 139890437 -102773916 + (GAGTG)n Simple_repeat Simple_repeat 5 94 0 232 250 40 113 chr1 139891216 139891340 -102773013 - MIR SINE MIR -128 134 20 * 326 287 23 62 chr1 139891338 139891467 -102772886 - MIR SINE MIR -67 141 18 296 266 18 36 chr1 139892458 139892599 -102771754 + MLT1L LTR MaLR 100 303 -312 233 87 0 43 chr1 139892637 139892683 -102771670 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 2045 118 0 3 chr1 139892688 139892975 -102771378 - AluSx SINE Alu -22 290 5 2010 137 10 0 chr1 139893565 139893871 -102770482 - AluSx SINE Alu -3 309 1 334 240 0 27 chr1 139895221 139895296 -102769057 - HAL1 LINE L1 0 2507 2435 2838 70 3 3 chr1 139895308 139895729 -102768624 + L1PA8 LINE L1 5801 6221 0 369 249 104 60 chr1 139895730 139895979 -102768374 - HAL1 LINE L1 -83 2424 2165 317 244 35 93 chr1 139896032 139896204 -102768149 - HAL1b LINE L1 -441 907 746 2140 152 25 3 chr1 139896402 139896757 -102767596 + MLT1A1 LTR MaLR 1 363 -2 1368 140 14 5 chr1 139896802 139897016 -102767337 - AluJo SINE Alu -11 301 86 1619 169 24 24 chr1 139897492 139897782 -102766571 + AluJo SINE Alu 8 297 -15 225 186 220 0 chr1 139898468 139898527 -102765826 - MER103 DNA DNA -11 155 84 234 295 0 13 chr1 139898527 139898605 -102765748 - LTR67 LTR ERVL 0 557 481 2024 141 3 12 chr1 139899343 139899663 -102764690 - 7SLRNA srpRNA srpRNA -3 317 1 874 95 7 15 chr1 139899663 139899800 -102764553 - AluJo SINE Alu -176 136 1 2159 94 3 0 chr1 139900118 139900415 -102763938 - AluSx SINE Alu -14 298 1 462 328 123 55 chr1 139900436 139900875 -102763478 - HAL1b LINE L1 -531 817 349 504 0 0 0 chr1 139901258 139901314 -102763039 + (TTAAA)n Simple_repeat Simple_repeat 5 60 0 2225 85 0 20 chr1 139901729 139902034 -102762319 + AluSg SINE Alu 1 299 -11 870 219 16 5 chr1 139902604 139902791 -102761562 + MER5A DNA MER1_type 1 189 0 230 256 33 56 chr1 139903016 139903065 -102761288 - MIR SINE MIR -70 192 144 2819 145 9 9 chr1 139903065 139903493 -102760860 + MSTC LTR MaLR 1 428 0 230 256 33 56 chr1 139903493 139903533 -102760820 - MIR SINE MIR -118 144 105 321 254 109 45 chr1 139903615 139903725 -102760628 + MIR SINE MIR 33 149 -113 2122 110 3 7 chr1 139904027 139904326 -102760027 + AluSx SINE Alu 1 298 -14 1190 32 5 38 chr1 139904326 139904390 -102759963 + (GAAA)n Simple_repeat Simple_repeat 1 241 0 1190 32 5 38 chr1 139904390 139904576 -102759777 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 952 229 0 0 chr1 139904591 139904766 -102759587 + FAM SINE Alu 1 175 0 258 271 102 34 chr1 139904940 139905058 -102759295 - MLT1K LTR MaLR -277 311 186 2997 59 0 0 chr1 139905277 139905632 -102758721 - THE1A LTR MaLR 0 355 1 325 288 81 5 chr1 139906743 139906891 -102757462 - MIR SINE MIR -62 146 2 2126 104 0 22 chr1 139907967 139908285 -102756068 + AluY SINE Alu 1 311 0 2885 35 3 3 chr1 139908501 139908846 -102755507 + SVA Other Other 1040 1384 -2 1530 162 6 105 chr1 139909196 139909529 -102754824 + AluJo SINE Alu 1 300 -2 872 120 0 7 chr1 139909548 139909690 -102754663 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 1628 192 10 0 chr1 139909696 139910003 -102754350 + AluJb SINE Alu 1 310 -2 486 263 215 29 chr1 139910042 139910247 -102754106 - MIR SINE MIR -6 256 14 600 144 7 137 chr1 139910425 139910578 -102753775 - FLAM_A SINE Alu 0 133 1 645 307 78 66 chr1 139911068 139911651 -102752702 - L2 LINE L2 0 3272 2686 23 0 0 0 chr1 139912570 139912593 -102751760 + AT_rich Low_complexity Low_complexity 1 23 0 443 179 0 0 chr1 139912593 139912671 -102751682 - AluJ/FLAM SINE Alu -233 79 2 2073 108 0 3 chr1 139912862 139913159 -102751194 - AluSx SINE Alu -16 296 1 445 298 73 77 chr1 139913177 139913449 -102750904 + HAL1b LINE L1 1 271 -1077 1777 137 29 13 chr1 139913464 139913641 -102750712 - AluJb SINE Alu 0 312 126 2166 107 3 0 chr1 139913641 139913949 -102750404 - AluSx SINE Alu -3 309 1 1777 137 29 13 chr1 139913949 139914078 -102750275 - AluJb SINE Alu -186 126 1 282 226 24 48 chr1 139914081 139914165 -102750188 + HAL1b LINE L1 266 347 -1001 228 170 0 0 chr1 139914192 139914245 -102750108 + T-rich Low_complexity Low_complexity 1 53 0 1349 314 39 32 chr1 139914273 139914871 -102749482 + L1MEd LINE L1 74 675 -5444 397 223 124 128 chr1 139914919 139915111 -102749242 + L1M4 LINE L1 3356 3548 -2598 9868 23 5 157 chr1 139915111 139916702 -102747651 + SVA Other Other 53 1386 0 397 223 124 128 chr1 139916702 139916783 -102747570 + L1M4 LINE L1 3548 3628 -2518 800 254 114 9 chr1 139916808 139917028 -102747325 + MLT1J LTR MaLR 1 243 -268 324 271 17 8 chr1 139917081 139917199 -102747154 + MLT1J LTR MaLR 378 496 -15 682 262 77 77 chr1 139917221 139917557 -102746796 + L1M4 LINE L1 3658 3996 -2150 801 158 24 0 chr1 139917557 139917684 -102746669 - FLAM_C SINE Alu -3 130 1 682 262 77 77 chr1 139917684 139917882 -102746471 + L1M4 LINE L1 3995 4192 -1954 30 0 0 0 chr1 139918058 139918088 -102746265 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr1 139918103 139918135 -102746218 + AT_rich Low_complexity Low_complexity 1 32 0 342 55 0 0 chr1 139918141 139918190 -102746163 - L1PA6 LINE L1 -8 6146 6098 813 324 97 48 chr1 139918358 139918554 -102745799 + HAL1 LINE L1 840 1025 -1482 2114 98 0 4 chr1 139918554 139918820 -102745533 + AluSc SINE Alu 3 267 -42 194 0 0 37 chr1 139918822 139918849 -102745504 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 813 324 97 48 chr1 139918849 139919260 -102745093 + HAL1 LINE L1 1025 1480 -1027 1041 156 11 6 chr1 139919262 139919441 -102744912 - MER70A LTR ERVL 0 472 293 532 173 0 0 chr1 139919486 139919567 -102744786 - MER70B LTR ERVL -270 308 228 831 161 0 0 chr1 139919570 139919700 -102744653 + AluJo/FLAM SINE Alu 1 130 -172 2040 100 0 38 chr1 139919702 139919993 -102744360 + AluSx SINE Alu 1 280 -32 2149 126 0 40 chr1 139920585 139920910 -102743443 - AluSx SINE Alu 0 312 1 291 281 79 12 chr1 139921497 139921661 -102742692 - L1M4 LINE L1 -945 5201 5027 1753 166 14 17 chr1 139921661 139921992 -102742361 - AluJb SINE Alu 0 312 1 666 143 0 17 chr1 139922788 139922907 -102741446 - L1PA16 LINE L1 -4 6162 6046 302 122 0 0 chr1 139922928 139922977 -102741376 + L1 LINE L1 4757 4805 -1341 215 250 36 0 chr1 139924213 139924269 -102740084 - L2 LINE L2 -65 3207 3150 1951 155 10 7 chr1 139924310 139924620 -102739733 - AluJo SINE Alu -1 311 1 494 269 21 7 chr1 139924624 139924769 -102739584 - MIR SINE MIR -114 148 2 2357 59 0 55 chr1 139924900 139925207 -102739146 + AluSc SINE Alu 1 290 -19 634 181 69 54 chr1 139925306 139925510 -102738843 - ORSL DNA AcHobo -61 214 8 732 284 35 73 chr1 139926853 139927045 -102737308 + L1ME4a LINE L1 5476 5674 -447 2389 92 0 19 chr1 139927045 139927360 -102736993 + AluSg SINE Alu 1 309 -1 732 284 35 73 chr1 139927360 139927657 -102736696 + L1ME4a LINE L1 5674 5946 -175 2211 112 0 7 chr1 139927668 139927972 -102736381 + AluSx SINE Alu 1 302 -10 760 166 53 37 chr1 139928305 139928492 -102735861 - LTR68 LTR ERV1 -129 611 422 2295 125 3 0 chr1 139928494 139928805 -102735548 + AluSx SINE Alu 1 312 0 1854 126 94 6 chr1 139928831 139929173 -102735180 + L1MB2 LINE L1 5798 6169 -2 23 0 0 0 chr1 139929173 139929196 -102735157 + AT_rich Low_complexity Low_complexity 1 23 0 319 331 91 0 chr1 139929242 139929363 -102734990 + HAL1b LINE L1 1194 1325 -23 1761 195 3 3 chr1 139929437 139929735 -102734618 + AluJo SINE Alu 1 298 -14 371 123 0 0 chr1 139930078 139930135 -102734218 - MER4A LTR ERV1 0 664 608 2068 86 0 0 chr1 139930137 139930392 -102733961 + AluSg SINE Alu 2 256 -54 275 122 20 0 chr1 139930396 139930445 -102733908 + GA-rich Low_complexity Low_complexity 2 51 0 323 271 77 18 chr1 139930749 139930919 -102733434 + L1MEd LINE L1 59 238 -5881 4213 111 83 92 chr1 139930940 139932325 -102732028 + pTR5 LTR ERV1 66 2438 0 2146 118 3 3 chr1 139932336 139932625 -102731728 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr1 139932625 139932647 -102731706 + AT_rich Low_complexity Low_complexity 1 22 0 402 272 58 34 chr1 139932699 139933186 -102731167 + L1MEd LINE L1 2412 2958 -3171 2366 106 0 0 chr1 139933191 139933494 -102730859 + AluSx SINE Alu 1 303 -9 644 279 100 46 chr1 139933511 139933765 -102730588 + L1MEd LINE L1 2093 2365 -3764 2259 122 0 0 chr1 139933765 139934060 -102730293 + AluSx SINE Alu 1 295 -17 644 279 100 46 chr1 139934060 139934085 -102730268 + L1MEd LINE L1 2365 2387 -3742 382 227 72 0 chr1 139934116 139934213 -102730140 + L1MEd LINE L1 2933 3036 -3093 2145 121 17 0 chr1 139934221 139934519 -102729834 + AluSx SINE Alu 1 303 -9 301 119 0 52 chr1 139934536 139934604 -102729749 + FLAM SINE Alu 81 132 -1 352 103 15 29 chr1 139934604 139934672 -102729681 + (GAAA)n Simple_repeat Simple_repeat 3 69 0 1658 220 131 5 chr1 139934710 139935092 -102729261 + L1PA12 LINE L1 997 1426 -6155 1078 86 7 0 chr1 139935145 139935295 -102729058 + MER83 LTR ERV1 1 151 -297 2272 168 109 11 chr1 139935295 139935755 -102728598 - MER61D LTR ERV1 0 501 1 1690 129 16 23 chr1 139935755 139936058 -102728295 + MER83 LTR ERV1 148 448 0 8261 176 22 19 chr1 139936058 139937544 -102726809 + MER83-int LTR ERV1 12 1501 -2784 2029 109 0 35 chr1 139937544 139937827 -102726526 + AluSx SINE Alu 14 286 -26 180 97 0 0 chr1 139937827 139937858 -102726495 + (TA)n Simple_repeat Simple_repeat 2 32 0 4965 141 52 21 chr1 139937858 139938795 -102725558 + L1MA4 LINE L1 5334 6295 -5 2439 174 24 9 chr1 139938817 139939270 -102725083 + MER4D LTR ERV1 421 880 -23 912 150 0 27 chr1 139939270 139939417 -102724936 + FLAM_C SINE Alu 1 143 0 1859 171 0 10 chr1 139939569 139939868 -102724485 + AluJb SINE Alu 5 300 -12 293 186 29 0 chr1 139939953 139940023 -102724330 + L1ME3A LINE L1 5324 5395 -767 971 106 0 0 chr1 139940024 139940156 -102724197 + AluY SINE Alu 1 132 -179 1075 269 99 16 chr1 139940170 139940716 -102723637 + L1ME3A LINE L1 5385 5975 -195 197 339 28 9 chr1 139941002 139941111 -102723242 + MIR SINE MIR 36 146 -62 1749 158 25 0 chr1 139941152 139941436 -102722917 + AluJo SINE Alu 13 303 -9 238 273 18 0 chr1 139943750 139943805 -102720548 + MER91 DNA MER1_type 135 190 0 2210 128 7 0 chr1 139947104 139947401 -102716952 + AluSq SINE Alu 1 299 -14 284 316 40 9 chr1 139948055 139948185 -102716168 + MIR SINE MIR 19 152 -67 1899 177 0 3 chr1 139948185 139948473 -102715880 + AluJo SINE Alu 1 287 -25 2447 83 7 3 chr1 139948484 139948786 -102715567 + AluSg SINE Alu 1 303 -7 261 75 0 0 chr1 139948786 139948826 -102715527 + (TA)n Simple_repeat Simple_repeat 2 41 0 201 274 126 11 chr1 139953679 139953774 -102710579 + MIR SINE MIR 36 141 -121 1308 159 7 69 chr1 139955543 139955820 -102708533 + AluJo SINE Alu 49 308 -4 406 246 119 25 chr1 139957400 139957518 -102706835 - MIR SINE MIR -16 246 118 186 271 42 52 chr1 139958413 139958509 -102705844 + MIR SINE MIR 56 150 -112 246 312 116 58 chr1 139959990 139960506 -102703847 - L1MEd LINE L1 -5567 552 7 709 244 30 35 chr1 139960983 139961184 -102703169 + MIR SINE MIR 58 257 -5 2413 82 3 0 chr1 139961196 139961490 -102702863 + AluSx SINE Alu 1 295 -17 226 164 33 66 chr1 139961495 139961556 -102702797 - MIR SINE MIR -148 114 56 499 232 68 39 chr1 139961574 139961781 -102702572 - L2 LINE L2 -55 3258 3046 273 290 7 76 chr1 139961973 139962118 -102702235 + MIR SINE MIR 10 144 -118 403 288 20 33 chr1 139963995 139964148 -102700205 + MIR SINE MIR 100 250 -12 277 216 62 41 chr1 139964164 139964261 -102700092 + MIR SINE MIR 119 217 -45 2557 54 0 3 chr1 139964573 139964871 -102699482 + AluY SINE Alu 1 297 -14 377 288 127 81 chr1 139964894 139965385 -102698968 + MLT1L LTR MaLR 22 609 -2 2440 87 0 0 chr1 139965439 139965738 -102698615 + AluSg SINE Alu 1 299 -11 268 277 0 24 chr1 139965977 139966060 -102698293 + MLT1L-int LTR MaLR 17 97 -1274 328 311 25 57 chr1 139966084 139966306 -102698047 + MLT1L-int LTR MaLR 303 518 -853 2214 114 0 3 chr1 139966306 139966596 -102697757 + AluSc SINE Alu 1 289 -20 328 311 25 57 chr1 139966596 139966617 -102697736 + MLT1L-int LTR MaLR 518 538 -833 595 92 51 0 chr1 139966621 139966719 -102697634 + AluSg/x SINE Alu 204 306 -6 186 43 0 0 chr1 139967502 139967525 -102696828 + (A)n Simple_repeat Simple_repeat 1 23 0 2055 140 0 0 chr1 139967525 139967804 -102696549 - AluSx SINE Alu -31 281 3 342 228 68 110 chr1 139967851 139968070 -102696283 + MLT1L-int LTR MaLR 1162 1371 0 293 262 12 128 chr1 139968087 139968141 -102696212 + MLT1G3 LTR MaLR 12 71 -484 2232 92 32 0 chr1 139968141 139968425 -102695928 + AluSg SINE Alu 1 293 -17 293 262 12 128 chr1 139968425 139968542 -102695811 + MLT1G3 LTR MaLR 71 163 -392 1966 163 0 0 chr1 139968545 139968834 -102695519 + AluJb SINE Alu 3 291 -21 34 0 0 0 chr1 139968834 139968868 -102695485 + AT_rich Low_complexity Low_complexity 1 34 0 535 228 123 95 chr1 139968871 139969190 -102695163 + MLT1G3 LTR MaLR 151 482 -60 2135 112 10 10 chr1 139969196 139969491 -102694862 + AluSx SINE Alu 1 295 -17 1483 193 128 6 chr1 139969561 139969914 -102694439 - MSTD LTR MaLR 0 396 1 2274 121 0 9 chr1 139969930 139970245 -102694108 - AluSx SINE Alu 0 312 1 275 234 104 0 chr1 139971178 139971255 -102693098 - MIR SINE MIR -60 202 118 1535 136 5 0 chr1 139971300 139971514 -102692839 - AluJo SINE Alu -18 294 80 1441 157 117 12 chr1 139971525 139971774 -102692579 - AluJo SINE Alu -37 275 1 1643 149 107 25 chr1 139972041 139972322 -102692031 + AluJo SINE Alu 1 304 -8 1117 68 0 0 chr1 139972327 139972459 -102691894 + AluSq/x SINE Alu 3 134 -178 2113 90 8 0 chr1 139972462 139972729 -102691624 + AluSq SINE Alu 39 307 -6 323 300 20 0 chr1 139972751 139972851 -102691502 + MIR3 SINE MIR 81 182 -26 194 328 0 0 chr1 139973746 139973804 -102690549 + L2 LINE L2 3129 3186 -86 243 0 0 0 chr1 139974187 139974214 -102690139 + (A)n Simple_repeat Simple_repeat 1 27 0 2616 62 0 3 chr1 139974374 139974680 -102689673 + AluY SINE Alu 1 305 -6 1807 52 11 52 chr1 139976594 139976865 -102687488 + L1PA8 LINE L1 5909 6168 -4 28 0 0 0 chr1 139976865 139976893 -102687460 + AT_rich Low_complexity Low_complexity 1 28 0 229 247 0 45 chr1 139977540 139977629 -102686724 + (CAGAGA)n Simple_repeat Simple_repeat 5 89 0 217 182 0 0 chr1 139977754 139977798 -102686555 + MIR SINE MIR 67 110 -98 843 122 0 9 chr1 139978307 139978422 -102685931 + FRAM SINE Alu 35 148 -28 419 274 161 11 chr1 139978893 139979079 -102685274 - MIR SINE MIR -7 255 42 684 225 102 11 chr1 139979309 139979496 -102684857 - AluJb SINE Alu -1 311 108 1826 135 97 0 chr1 139979597 139979864 -102684489 + AluSx SINE Alu 3 295 -17 296 340 71 27 chr1 139979906 139980274 -102684079 + L2 LINE L2 2385 2768 -546 244 327 32 32 chr1 139980317 139980473 -102683880 + L2 LINE L2 2906 3061 -211 2552 68 3 3 chr1 139980581 139980890 -102683463 - AluSx SINE Alu -3 309 1 233 314 57 29 chr1 139980901 139981006 -102683347 + L2 LINE L2 3116 3223 -49 1519 110 15 0 chr1 139981616 139981816 -102682537 + AluSp SINE Alu 1 203 -110 337 259 0 0 chr1 139982749 139982830 -102681523 - MLT1K LTR MaLR -343 245 165 319 225 133 19 chr1 139982875 139982995 -102681358 + MIR SINE MIR 70 201 -61 2467 94 3 0 chr1 139983066 139983375 -102680978 + AluSg SINE Alu 1 310 0 7682 52 6 128 chr1 139983768 139984976 -102679377 + SVA Other Other 13 1072 -314 925 137 14 7 chr1 139985077 139985223 -102679130 + FRAM SINE Alu 19 165 -11 1252 183 18 0 chr1 139985223 139985452 -102678901 - MER70A LTR ERVL -239 233 1 238 247 71 0 chr1 139985452 139985537 -102678816 + HAL1 LINE L1 1478 1568 -939 1793 150 31 7 chr1 139985542 139985828 -102678525 + AluSx SINE Alu 1 293 -19 210 71 0 0 chr1 139985828 139985856 -102678497 + (GA)n Simple_repeat Simple_repeat 1 28 0 2349 91 0 32 chr1 139985918 139986227 -102678126 + AluSx SINE Alu 1 299 -13 2197 116 9 31 chr1 139986687 139987006 -102677347 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 139987052 139987075 -102677278 + AT_rich Low_complexity Low_complexity 1 23 0 504 335 36 79 chr1 139987114 139987398 -102676955 + L1M4c LINE L1 2228 2493 -3889 2308 110 0 7 chr1 139987398 139987698 -102676655 + AluSp SINE Alu 1 298 -15 504 335 36 79 chr1 139987698 139987936 -102676417 + L1M4c LINE L1 2493 2740 -3642 739 174 0 22 chr1 139987942 139988080 -102676273 + AluJo SINE Alu 2 136 -176 2134 137 0 0 chr1 139988239 139988539 -102675814 + AluSx SINE Alu 1 300 -12 1233 139 0 0 chr1 139988690 139988862 -102675491 + AluJo SINE Alu 137 308 -4 2081 93 37 0 chr1 139988866 139989134 -102675219 + AluY SINE Alu 20 297 -14 2261 114 0 3 chr1 139989206 139989514 -102674839 + AluSx SINE Alu 1 307 -5 502 244 58 49 chr1 139989536 139989672 -102674681 + L1ME3 LINE L1 5725 5866 -296 2218 100 4 0 chr1 139989672 139989975 -102674378 + AluSp SINE Alu 3 306 0 502 244 58 49 chr1 139989975 139990062 -102674291 + L1ME3 LINE L1 5866 5951 -211 1241 97 0 0 chr1 139990076 139990252 -102674101 + AluSg/x SINE Alu 129 304 0 779 282 161 31 chr1 139990531 139991046 -102673307 + HAL1b LINE L1 340 921 -427 1999 105 19 73 chr1 139991049 139991363 -102672990 + AluSx SINE Alu 1 297 -15 328 185 194 28 chr1 139991363 139991471 -102672882 + HAL1b LINE L1 1024 1149 -199 2247 107 14 0 chr1 139991472 139991762 -102672591 - AluSx SINE Alu -18 294 1 494 353 49 0 chr1 139991768 139992012 -102672341 - L2 LINE L2 -606 2708 2453 503 309 39 87 chr1 139992101 139992247 -102672106 + L2 LINE L2 2143 2294 -1020 1856 127 101 0 chr1 139992247 139992514 -102671839 - AluSx SINE Alu -15 297 4 503 309 39 87 chr1 139992514 139992852 -102671501 + L2 LINE L2 2294 2604 -710 212 224 243 37 chr1 139992841 139992948 -102671405 + L2 LINE L2 3092 3220 -93 * 1939 154 0 32 chr1 139992962 139993273 -102671080 + AluJb SINE Alu 1 301 -11 395 125 0 0 chr1 139993273 139993329 -102671024 + AluS SINE Alu 2 57 -251 2108 105 7 3 chr1 139998920 139999205 -102665148 - AluSc SINE Alu -12 297 12 329 120 0 0 chr1 139999207 139999257 -102665096 - Alu SINE Alu -252 50 1 2430 78 3 0 chr1 140000288 140000581 -102663772 + AluSp SINE Alu 1 294 -19 2276 112 10 0 chr1 140000941 140001244 -102663109 - AluSc SINE Alu -2 307 2 2413 88 3 0 chr1 140001358 140001655 -102662698 - AluSp SINE Alu -14 299 2 1049 113 0 0 chr1 140002984 140003117 -102661236 + AluJb SINE Alu 1 133 -179 2000 126 3 14 chr1 140003127 140003420 -102660933 + AluSx SINE Alu 1 290 -22 2302 95 0 3 chr1 140003428 140003710 -102660643 + AluSx SINE Alu 1 283 -29 228 35 0 0 chr1 140003710 140003739 -102660614 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 2302 95 0 3 chr1 140003739 140003751 -102660602 + AluSx SINE Alu 283 294 -18 2499 73 0 3 chr1 140004341 140004643 -102659710 + AluY SINE Alu 2 302 -9 2273 85 0 24 chr1 140005855 140006148 -102658205 - AluSg SINE Alu -19 291 6 683 167 127 0 chr1 140007091 140007241 -102657112 - FRAM SINE Alu -10 166 1 1386 177 38 51 chr1 140007291 140007607 -102656746 + AluJo SINE Alu 1 312 0 2257 88 3 7 chr1 140007685 140007982 -102656371 - AluSx SINE Alu -16 296 1 231 235 39 0 chr1 140008004 140008055 -102656298 + MER5B DNA MER1_type 1 53 -125 948 115 8 0 chr1 140008069 140008199 -102656154 + FLAM_C SINE Alu 1 131 -12 1168 78 6 36 chr1 140008433 140008600 -102655753 + AluSp SINE Alu 130 291 -22 297 75 0 0 chr1 140008600 140008640 -102655713 + (TA)n Simple_repeat Simple_repeat 2 41 0 693 181 12 38 chr1 140010077 140010237 -102654116 - AluJb SINE Alu -1 311 156 2284 95 30 3 chr1 140010266 140010570 -102653783 - AluSx SINE Alu 0 312 1 234 105 0 0 chr1 140010711 140010749 -102653604 + (TG)n Simple_repeat Simple_repeat 2 39 0 334 257 50 10 chr1 140010777 140010878 -102653475 + L2 LINE L2 3208 3312 -1 2482 72 0 0 chr1 140010887 140011191 -102653162 + AluY SINE Alu 1 304 -7 200 228 13 76 chr1 140011486 140011565 -102652788 + G-rich Low_complexity Low_complexity 5 78 0 568 292 20 48 chr1 140011957 140012207 -102652146 - MIR SINE MIR 0 262 20 2296 114 0 0 chr1 140017306 140017605 -102646748 - AluSx SINE Alu -13 299 1 353 281 7 37 chr1 140017802 140017937 -102646416 - MIR3 SINE MIR -7 201 71 236 242 42 53 chr1 140018193 140018251 -102646102 + L2 LINE L2 270 327 -2987 1637 167 28 21 chr1 140018251 140018402 -102645951 - AluJb SINE Alu -22 290 135 2341 105 0 0 chr1 140018402 140018698 -102645655 - AluSx SINE Alu -16 296 1 1013 187 0 6 chr1 140018698 140018834 -102645519 - AluJo SINE Alu -177 135 1 1637 167 28 21 chr1 140018698 140018834 -102645519 - AluJb SINE Alu -177 135 1 236 242 42 53 chr1 140018834 140018870 -102645483 + L2 LINE L2 327 363 -2951 702 178 7 37 chr1 140070055 140070190 -102594163 + MER70-int LTR ERVL 4635 4765 -258 9995 187 26 13 chr1 140070204 140073284 -102591069 - L1PA16 LINE L1 -18 6148 3028 1360 32 0 0 chr1 140073284 140073441 -102590912 - L1PA5 LINE L1 -7 6147 5991 9995 187 26 13 chr1 140073441 140073479 -102590874 - L1PA16 LINE L1 -3138 3028 2992 2265 63 42 3 chr1 140073992 140074277 -102590076 - AluY SINE Alu -15 296 1 3126 254 13 7 chr1 140075829 140076717 -102587636 - L1 LINE L1 -3140 4425 3531 2025 79 0 0 chr1 140076717 140076969 -102587384 - AluY SINE Alu -4 307 56 316 111 19 0 chr1 140076973 140077027 -102587326 + MER70-int LTR ERVL 4766 4820 -203 2272 86 6 138 chr1 140077028 140077514 -102586839 + MER4A LTR ERV1 1 422 -242 531 199 175 36 chr1 140077535 140077701 -102586652 + MER4C LTR ERV1 277 465 0 1231 138 15 0 chr1 140077701 140077904 -102586449 + MER70-int LTR ERVL 4818 5023 0 1030 250 35 21 chr1 140077940 140078224 -102586129 + MER70A LTR ERVL 185 472 0 2512 60 0 16 chr1 140079101 140079439 -102584914 + AluY SINE Alu 1 311 0 240 267 107 0 chr1 140080158 140080233 -102584120 + MIR SINE MIR 66 148 -60 311 220 113 75 chr1 140080875 140080910 -102583443 - L2 LINE L2 -2 3311 3279 192 77 0 0 chr1 140080910 140080936 -102583417 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 311 220 113 75 chr1 140080936 140081059 -102583294 - L2 LINE L2 -34 3279 3147 985 194 12 0 chr1 140081059 140081219 -102583134 + FAM SINE Alu 1 162 -13 323 196 69 39 chr1 140081220 140081331 -102583022 + L1MC4 LINE L1 1995 6983 -1339 1067 305 66 13 chr1 140081347 140081860 -102582493 - L2 LINE L2 -157 3156 2619 755 198 180 7 chr1 140081873 140082157 -102582196 - MER33 DNA MER1_type -5 319 1 331 220 16 19 chr1 140082157 140082288 -102582065 - L2 LINE L2 -711 2603 2430 198 278 111 0 chr1 140082279 140082333 -102582020 - L2 LINE L2 -44 3269 3210 * 259 316 107 87 chr1 140082764 140082927 -102581426 + L2 LINE L2 3073 3242 -30 1494 164 33 95 chr1 140082927 140083316 -102581037 + MLT1A1 LTR MaLR 1 365 0 259 316 107 87 chr1 140083316 140083348 -102581005 + L2 LINE L2 3242 3272 0 611 128 0 28 chr1 140083677 140083786 -102580567 - LTR15 LTR ERV1 -6 487 382 323 205 24 24 chr1 140083819 140083902 -102580451 + L2 LINE L2 2521 2603 -711 334 260 63 15 chr1 140083902 140084027 -102580326 + MER33 DNA MER1_type 1 111 -51 * 1986 85 18 7 chr1 140084021 140084303 -102580050 - LTR15 LTR ERV1 -208 285 1 272 250 0 16 chr1 140084791 140084855 -102579498 + MIR SINE MIR 78 140 -68 845 280 4 81 chr1 140085032 140085224 -102579129 + MIR SINE MIR 5 172 -90 2465 77 3 3 chr1 140085224 140085535 -102578818 - AluY SINE Alu 0 311 1 845 280 4 81 chr1 140085535 140085613 -102578740 + MIR SINE MIR 172 254 -8 213 357 71 21 chr1 140085675 140085815 -102578538 + L3b LINE CR1 1315 1461 -122 484 268 42 0 chr1 140086129 140086271 -102578082 + MIR3 SINE MIR 31 178 -30 198 236 36 0 chr1 140086532 140086587 -102577766 - L2 LINE L2 0 3272 3216 208 231 0 19 chr1 140087205 140087257 -102577096 + C-rich Low_complexity Low_complexity 2 52 0 221 143 0 0 chr1 140087383 140087418 -102576935 + L2 LINE L2 3144 3178 -94 442 336 27 0 chr1 140087454 140087603 -102576750 + L2 LINE L2 2622 2774 -540 292 264 234 30 chr1 140087697 140087864 -102576489 + L2 LINE L2 3109 3309 -4 260 287 99 0 chr1 140088055 140088156 -102576197 - L3 LINE CR1 -318 1259 1149 212 338 0 38 chr1 140088303 140088436 -102575917 + GA-rich Low_complexity Low_complexity 3 130 0 282 295 98 95 chr1 140089424 140089875 -102574478 + L2 LINE L2 2820 3271 -1 180 0 0 0 chr1 140090323 140090343 -102574010 + (T)n Simple_repeat Simple_repeat 1 20 0 197 305 144 77 chr1 140090739 140091024 -102573329 - L2 LINE L2 -72 3200 2897 481 239 150 56 chr1 140091072 140091306 -102573047 + L3 LINE CR1 1278 1533 -44 402 271 16 47 chr1 140091555 140091684 -102572669 - L2 LINE L2 -16 3297 3173 330 277 136 14 chr1 140092218 140092364 -102571989 + MIR3 SINE MIR 43 208 0 2439 104 0 0 chr1 140094457 140094764 -102569589 + AluSp SINE Alu 1 307 -6 482 291 110 55 chr1 140095539 140095831 -102568522 + L2 LINE L2 2996 3303 -10 423 303 79 24 chr1 140097051 140097216 -102567137 - MIR3 SINE MIR -3 205 32 209 263 71 20 chr1 140097563 140097662 -102566691 + L2 LINE L2 2957 3060 -212 502 215 163 0 chr1 140098178 140098313 -102566040 + MIR SINE MIR 76 232 -30 367 164 15 30 chr1 140098340 140098407 -102565946 - L2 LINE L2 0 3313 3248 227 275 0 72 chr1 140098498 140098567 -102565786 + L2 LINE L2 3209 3272 0 260 309 155 11 chr1 140098949 140099130 -102565223 - Charlie8 DNA MER1_type -2152 265 59 270 290 97 0 chr1 140099237 140099361 -102564992 + L2 LINE L2 3137 3272 0 2225 105 0 7 chr1 140099945 140100241 -102564112 + AluSg SINE Alu 1 294 -16 400 286 74 6 chr1 140100422 140100597 -102563756 + MIR3 SINE MIR 18 204 -4 202 364 143 21 chr1 140101461 140101601 -102562752 + L2 LINE L2 3116 3272 0 4866 180 99 77 chr1 140101872 140102602 -102561751 - Charlie1a DNA MER1_type -1310 1451 738 2093 121 0 0 chr1 140102602 140102921 -102561432 + AluY SINE Alu 1 319 0 4866 180 99 77 chr1 140102921 140103609 -102560744 - Charlie1a DNA MER1_type -2023 738 1 1011 124 11 6 chr1 140103718 140103896 -102560457 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 262 316 18 77 chr1 140103896 140104064 -102560289 - L2 LINE L2 -8 3305 3148 314 277 57 50 chr1 140106129 140106270 -102558083 + MIR SINE MIR 107 248 -14 610 153 0 9 chr1 140106655 140106766 -102557587 + AluJb SINE Alu 201 310 -2 2040 118 0 17 chr1 140106778 140107099 -102557254 + AluSc SINE Alu 1 316 0 1482 115 138 19 chr1 140107111 140107397 -102556956 + AluSg1 SINE Alu 1 309 0 533 271 116 14 chr1 140107444 140107651 -102556702 + MIR SINE MIR 21 248 -14 339 309 88 46 chr1 140109984 140110178 -102554175 + LTR16C LTR ERVL 209 418 -73 4109 102 23 2 chr1 140110178 140110746 -102553607 - LTR19B LTR ERV1 0 580 1 339 309 88 46 chr1 140110746 140110813 -102553540 + LTR16C LTR ERVL 418 481 -10 228 281 31 88 chr1 140111485 140111677 -102552676 + L2 LINE L2 1984 2164 -1150 248 297 47 54 chr1 140111951 140112099 -102552254 - MIR SINE MIR -57 205 59 494 234 64 7 chr1 140112214 140112355 -102551998 + MIR SINE MIR 78 226 -36 416 253 129 34 chr1 140113079 140113257 -102551096 - L2 LINE L2 -1 3312 3118 389 310 149 50 chr1 140115434 140116729 -102547624 - L2 LINE L2 -8 3264 1843 438 204 11 53 chr1 140116778 140116940 -102547413 - MER63 DNA MER1_type 0 1062 679 12112 182 26 52 chr1 140117709 140118055 -102546298 - L1PB4 LINE L1 0 6156 5802 1995 128 4 0 chr1 140118055 140118329 -102546024 - AluSg SINE Alu -1 309 35 12112 182 26 52 chr1 140118329 140118382 -102545971 - L1PB4 LINE L1 -354 5802 5749 228 67 0 0 chr1 140118382 140118412 -102545941 + (CA)n Simple_repeat Simple_repeat 2 31 0 12112 182 26 52 chr1 140118412 140118685 -102545668 - L1PB4 LINE L1 -407 5749 5470 387 73 0 0 chr1 140118685 140118740 -102545613 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 1684 92 0 0 chr1 140118740 140118946 -102545407 - AluSc SINE Alu -32 277 72 12112 182 26 52 chr1 140118946 140122734 -102541619 - L1PB4 LINE L1 -684 5472 1903 683 152 0 0 chr1 140122738 140122843 -102541510 - U6 snRNA snRNA -2 105 1 978 183 69 15 chr1 140123060 140123262 -102541091 - MER20 DNA MER1_type -4 215 3 295 333 51 32 chr1 140124168 140124324 -102540029 + L2 LINE L2 3114 3272 0 845 289 69 61 chr1 140125334 140126107 -102538246 + HAL1b LINE L1 59 837 -511 1477 228 68 86 chr1 140126256 140127025 -102537328 + L1MC5 LINE L1 6476 7235 -726 2949 140 38 0 chr1 140127059 140127509 -102536844 - L1P LINE L1 -5669 477 11 667 269 60 78 chr1 140127534 140127981 -102536372 + L1M4 LINE L1 3206 3644 -2502 1874 220 104 84 chr1 140128005 140128365 -102535988 - L1MC5 LINE L1 -48 7913 7562 2132 145 0 0 chr1 140128365 140128675 -102535678 - AluSx SINE Alu -2 310 1 1874 220 104 84 chr1 140128675 140129170 -102535183 - L1MC5 LINE L1 -399 7562 7037 309 26 0 0 chr1 140129170 140129208 -102535145 + (CA)n Simple_repeat Simple_repeat 2 39 0 1874 220 104 84 chr1 140129208 140129254 -102535099 - L1MC5 LINE L1 -924 7037 6993 280 188 31 0 chr1 140129271 140129335 -102535018 - MLT1F1 LTR MaLR -13 554 489 238 102 41 41 chr1 140129497 140129546 -102534807 - MLT1I LTR MaLR -263 146 98 1654 107 0 5 chr1 140129576 140129800 -102534553 - AluSg/x SINE Alu -4 308 86 818 301 40 8 chr1 140129843 140130218 -102534135 + L1M4 LINE L1 4893 5279 -867 546 254 74 56 chr1 140130260 140130817 -102533536 - L1MC5 LINE L1 -743 5403 4893 243 235 0 0 chr1 140130853 140130904 -102533449 - HAL1b LINE L1 -613 735 685 985 204 6 0 chr1 140130984 140131160 -102533193 - MSTD LTR MaLR 0 396 220 651 200 0 9 chr1 140131152 140131267 -102533086 - MSTD LTR MaLR -282 114 1 * 808 289 65 40 chr1 140131267 140131772 -102532581 - HAL1b LINE L1 -751 597 80 324 197 105 0 chr1 140131775 140131890 -102532463 - L1MB3 LINE L1 -2 6181 6045 1289 174 13 0 chr1 140132742 140132978 -102531375 - L1MA8 LINE L1 -23 6268 6030 1754 214 21 32 chr1 140133139 140133517 -102530836 - MLT1E LTR MaLR 0 593 220 1731 186 20 0 chr1 140133552 140133858 -102530495 + AluJb SINE Alu 1 312 0 36582 86 12 40 chr1 140133902 140140222 -102524131 + L1PA6 LINE L1 12 6149 -5 216 0 0 0 chr1 140141841 140141865 -102522488 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 244 0 0 chr1 140142891 140142932 -102521421 - MIR3 SINE MIR -24 184 144 451 303 101 5 chr1 140142985 140143203 -102521150 + MIR SINE MIR 24 262 0 286 339 90 20 chr1 140143962 140144207 -102520146 + MIR SINE MIR 1 262 0 248 276 0 0 chr1 140144564 140144622 -102519731 - MIR SINE MIR -60 148 91 2248 125 0 0 chr1 140146174 140146485 -102517868 + AluY SINE Alu 1 311 0 198 0 0 0 chr1 140148245 140148267 -102516086 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 259 294 22 11 chr1 140150002 140150094 -102514259 + MIR SINE MIR 121 213 -49 672 222 66 30 chr1 140150849 140151047 -102513306 - L2 LINE L2 -1 3312 3108 216 191 0 0 chr1 140152507 140152554 -102511799 + MIR SINE MIR 104 150 -112 607 201 29 178 chr1 140153199 140153248 -102511105 - MER65A LTR ERV1 0 445 390 1883 154 3 23 chr1 140153248 140153554 -102510799 + AluJo SINE Alu 1 300 -12 607 201 29 178 chr1 140153554 140154026 -102510327 - MER65A LTR ERV1 -55 390 2 325 361 128 10 chr1 140154310 140154623 -102509730 - L2 LINE L2 -453 2861 2512 298 295 163 9 chr1 140154735 140155067 -102509286 - L2 LINE L2 -1093 2221 1839 228 167 0 0 chr1 140155142 140155190 -102509163 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 2160 88 44 3 chr1 140155809 140156104 -102508249 - AluY SINE Alu -4 307 1 808 119 28 0 chr1 140156847 140156990 -102507363 + CT-rich Low_complexity Low_complexity 3 149 0 210 143 0 0 chr1 140157013 140157048 -102507305 + (TCTCCC)n Simple_repeat Simple_repeat 1 35 0 329 343 70 7 chr1 140157212 140157355 -102506998 + L2 LINE L2 3121 3272 0 4823 125 91 27 chr1 140157857 140158704 -102505649 - MER4D LTR ERV1 0 903 3 2176 117 0 0 chr1 140159417 140159708 -102504645 + AluSx SINE Alu 1 291 -21 207 0 0 0 chr1 140159804 140159827 -102504526 + (TTCC)n Simple_repeat Simple_repeat 4 26 0 2196 98 3 3 chr1 140159828 140160114 -102504239 - AluSc SINE Alu -23 286 1 240 293 0 52 chr1 140160197 140160313 -102504040 + MIR SINE MIR 119 228 -34 241 333 93 74 chr1 140162378 140162636 -102501717 + L2 LINE L2 2995 3257 -15 409 296 75 31 chr1 140162916 140163075 -102501278 - MIR SINE MIR -37 225 60 231 315 72 0 chr1 140163123 140163234 -102501119 - L3 LINE CR1 -466 1111 993 286 290 183 28 chr1 140163308 140163560 -102500793 - L3 LINE CR1 -582 995 705 1950 122 0 41 chr1 140163567 140163862 -102500491 - AluJb SINE Alu -5 307 25 310 309 0 27 chr1 140163919 140164029 -102500324 - MIR SINE MIR -31 231 125 412 308 71 86 chr1 140165104 140165455 -102498898 + L2 LINE L2 2927 3272 0 194 241 69 23 chr1 140165456 140165543 -102498810 + MIR3 SINE MIR 118 208 0 409 283 63 26 chr1 140166289 140166317 -102498036 + L2 LINE L2 2231 2257 -1057 2272 98 0 3 chr1 140166317 140166614 -102497739 - AluSx SINE Alu -16 296 1 409 283 63 26 chr1 140166614 140166776 -102497577 + L2 LINE L2 2257 2428 -886 1839 240 103 11 chr1 140166981 140167772 -102496581 + L2 LINE L2 2444 3309 -4 214 301 94 84 chr1 140167780 140168258 -102496095 + L2 LINE L2 1623 2105 -1209 1259 134 10 0 chr1 140168306 140168500 -102495853 - L1MC3 LINE L1 -261 7524 7329 * 2869 176 92 9 chr1 140168498 140168819 -102495534 + L1MC3 LINE L1 6694 6987 -798 195 100 0 0 chr1 140168819 140168849 -102495504 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2869 176 92 9 chr1 140168849 140169111 -102495242 + L1MC3 LINE L1 6987 7326 -459 4130 204 46 8 chr1 140169133 140170367 -102493986 - L1MC/D LINE L1 -745 5401 4216 689 140 0 0 chr1 140170367 140170474 -102493879 - FLAM_C SINE Alu -2 141 35 977 125 0 0 chr1 140170380 140170508 -102493845 - AluJo/FLAM SINE Alu -174 128 1 4130 204 46 8 chr1 140170508 140170755 -102493598 - L1MC/D LINE L1 -1964 4182 4158 2240 110 0 7 chr1 140171131 140171432 -102492921 + AluSx SINE Alu 1 299 -13 7307 38 1 0 chr1 140171631 140172524 -102491829 + L1P LINE L1 2259 3152 -2994 395 336 86 20 chr1 140172524 140172768 -102491585 + L2 LINE L2 2049 2308 -1006 231 262 43 85 chr1 140172939 140173080 -102491273 + MIR SINE MIR 117 251 -11 190 330 110 9 chr1 140173405 140173514 -102490839 + L2 LINE L2 2843 2962 -352 193 229 66 16 chr1 140173777 140173838 -102490515 + L2 LINE L2 3160 3223 -90 * 275 304 114 46 chr1 140173804 140174041 -102490312 - L2 LINE L2 -1038 2276 2024 217 309 0 15 chr1 140174562 140174630 -102489723 + MIR SINE MIR 86 152 -56 3763 23 0 0 chr1 140174759 140175198 -102489155 - L1HS LINE L1 -817 5329 4891 * 7330 10 0 0 chr1 140175195 140176003 -102488350 + L1HS LINE L1 5346 6153 -2 282 115 0 0 chr1 140176005 140176057 -102488296 + (A)n Simple_repeat Simple_repeat 1 52 0 201 299 93 10 chr1 140176612 140176709 -102487644 - MIR SINE MIR -86 122 18 23 0 0 0 chr1 140176741 140176764 -102487589 + AT_rich Low_complexity Low_complexity 1 23 0 1635 185 55 25 chr1 140177004 140177181 -102487172 - MLT1A2 LTR MaLR 0 374 204 279 0 0 0 chr1 140177181 140177212 -102487141 + (GA)n Simple_repeat Simple_repeat 1 31 0 1635 185 55 25 chr1 140177212 140177397 -102486956 - MLT1A2 LTR MaLR -170 204 1 2307 112 102 11 chr1 140177556 140177930 -102486423 - MER65A LTR ERV1 0 445 38 1963 234 15 19 chr1 140177936 140178401 -102485952 - MER65A-int LTR ERV1 -8 4863 4401 1965 238 65 0 chr1 140178403 140178831 -102485522 - MER65A-int LTR ERV1 -812 4059 3604 1725 119 50 58 chr1 140178923 140179200 -102485153 + AluSx SINE Alu 1 275 -37 2642 206 72 25 chr1 140179261 140179971 -102484382 - MER65-int LTR ERV1 -1113 3823 3081 1966 231 75 38 chr1 140180002 140180178 -102484175 - MER65-int LTR ERV1 -3755 1116 948 261 0 0 0 chr1 140180178 140180207 -102484146 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1966 231 75 38 chr1 140180207 140180910 -102483443 - MER65-int LTR ERV1 -3923 948 154 237 231 13 51 chr1 140180949 140181027 -102483326 - LTR16A1 LTR ERVL 0 457 383 1963 106 0 0 chr1 140181027 140181281 -102483072 + AluSq SINE Alu 1 254 -59 9473 213 69 37 chr1 140181281 140183616 -102480737 + L1MA8 LINE L1 266 2523 -4583 360 0 0 0 chr1 140183616 140183656 -102480697 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 9473 213 69 37 chr1 140183656 140185958 -102478395 + L1MA8 LINE L1 2523 4756 -2350 1729 125 21 98 chr1 140185958 140186295 -102478058 + AluYb8 SINE Alu 1 311 -7 9473 213 69 37 chr1 140186295 140186698 -102477655 + L1MA8 LINE L1 4756 5144 -1962 5470 147 51 17 chr1 140186681 140187333 -102477020 + L1MA8 LINE L1 5738 6366 -885 * 1259 204 25 115 chr1 140187333 140187734 -102476619 - MLT1A1 LTR MaLR 0 365 1 5470 147 51 17 chr1 140187734 140188545 -102475808 + L1MA8 LINE L1 6366 7250 -1 251 267 207 0 chr1 140188549 140188665 -102475688 + L1ME3 LINE L1 5895 6034 -128 354 214 45 0 chr1 140188668 140188757 -102475596 + L1ME3A LINE L1 6070 6162 -8 2994 274 80 38 chr1 140188772 140189741 -102474612 - L1MDa LINE L1 -4124 2416 1408 331 215 111 82 chr1 140189773 140189908 -102474445 - MLT1A2 LTR MaLR -60 314 176 1513 165 57 102 chr1 140189910 140190156 -102474197 - L1MDa LINE L1 -5136 1404 1187 1946 128 20 7 chr1 140190156 140190280 -102474073 + AluSx SINE Alu 1 122 -190 345 24 0 0 chr1 140190280 140190322 -102474031 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1946 128 20 7 chr1 140190322 140190493 -102473860 + AluSx SINE Alu 122 300 -12 1513 165 57 102 chr1 140190493 140190706 -102473647 - L1MDa LINE L1 -5353 1187 966 1001 260 22 22 chr1 140190780 140191049 -102473304 - L1MDa LINE L1 -6140 400 132 571 227 0 8 chr1 140191119 140191238 -102473115 - L1MDa LINE L1 -6406 134 17 301 232 92 119 chr1 140192681 140192974 -102471379 + L1M2 LINE L1 526 810 -6039 315 169 35 169 chr1 140193289 140193431 -102470922 + L1M2 LINE L1 778 900 -5949 347 246 78 49 chr1 140193699 140193841 -102470512 + MIR3 SINE MIR 60 205 -3 220 230 81 54 chr1 140195512 140195586 -102468767 + MIR SINE MIR 28 103 -105 274 206 16 48 chr1 140195587 140195650 -102468703 + L2 LINE L2 3210 3270 -2 226 271 176 12 chr1 140195630 140195715 -102468638 + MIR SINE MIR 72 170 -92 * 1078 116 0 0 chr1 140196664 140196802 -102467551 + AluJo SINE Alu 1 138 -174 1676 174 3 10 chr1 140196804 140197098 -102467255 + AluJb SINE Alu 6 297 -15 528 288 0 14 chr1 140197416 140197778 -102466575 + (CATA)n Simple_repeat Simple_repeat 1 356 0 300 243 0 0 chr1 140197788 140197957 -102466396 + (TA)n Simple_repeat Simple_repeat 1 169 0 252 258 6 8 chr1 140197970 140198336 -102466017 + (TA)n Simple_repeat Simple_repeat 1 364 0 369 0 0 0 chr1 140198711 140198752 -102465601 + (TG)n Simple_repeat Simple_repeat 1 41 0 422 329 70 0 chr1 140200020 140200178 -102464175 - MIR SINE MIR -74 188 20 347 296 95 35 chr1 140200330 140200499 -102463854 - MIR3 SINE MIR -13 195 17 227 286 83 12 chr1 140201848 140201932 -102462421 + MIR SINE MIR 53 142 -66 340 333 0 32 chr1 140203447 140203633 -102460720 + (TG)n Simple_repeat Simple_repeat 1 180 0 * 361 286 18 29 chr1 140203596 140203767 -102460586 + (TATATG)n Simple_repeat Simple_repeat 6 174 0 378 284 11 38 chr1 140203798 140203981 -102460372 + (TATG)n Simple_repeat Simple_repeat 1 178 0 205 294 137 0 chr1 140204199 140204301 -102460052 + L2 LINE L2 2722 2837 -477 448 317 149 40 chr1 140204357 140204685 -102459668 + L2 LINE L2 2909 3272 0 224 303 0 13 chr1 140204897 140204973 -102459380 + GA-rich Low_complexity Low_complexity 4 78 0 519 233 67 13 chr1 140205482 140205632 -102458721 - MER113 DNA MER1_type? -362 159 2 219 273 91 0 chr1 140206000 140206066 -102458287 - L2 LINE L2 0 3272 3201 289 325 48 53 chr1 140206291 140206479 -102457874 + MIR SINE MIR 34 220 -42 261 320 27 56 chr1 140207056 140207181 -102457172 - MIR SINE MIR -85 123 1 336 228 132 35 chr1 140207209 140207323 -102457030 - L2 LINE L2 -10 3303 3179 335 211 13 26 chr1 140207344 140207420 -102456933 + MIR3 SINE MIR 115 189 -19 343 333 11 73 chr1 140207930 140208107 -102456246 + L2 LINE L2 3102 3267 -5 560 340 91 4 chr1 140208780 140209021 -102455332 - MIR SINE MIR 0 262 1 336 228 132 35 chr1 140209049 140209163 -102455190 - L2 LINE L2 -10 3303 3179 335 211 13 26 chr1 140209184 140209260 -102455093 + MIR3 SINE MIR 115 189 -19 343 333 11 73 chr1 140209770 140209947 -102454406 + L2 LINE L2 3102 3267 -5 195 129 0 0 chr1 140210152 140210183 -102454170 + (CACCAT)n Simple_repeat Simple_repeat 3 33 0 403 327 0 5 chr1 140211334 140211546 -102452807 + (CCA)n Simple_repeat Simple_repeat 1 210 0 197 95 0 71 chr1 140211627 140211669 -102452684 + (CACCAT)n Simple_repeat Simple_repeat 3 41 0 705 169 0 16 chr1 140211736 140211919 -102452434 + (CCA)n Simple_repeat Simple_repeat 1 180 0 660 124 0 21 chr1 140211965 140212110 -102452243 + (CCA)n Simple_repeat Simple_repeat 3 144 0 868 165 0 12 chr1 140212123 140212894 -102451459 + (CCA)n Simple_repeat Simple_repeat 1 761 0 926 139 0 6 chr1 140212906 140213086 -102451267 + (CCA)n Simple_repeat Simple_repeat 1 179 0 251 292 0 14 chr1 140213122 140213194 -102451159 + (CCA)n Simple_repeat Simple_repeat 1 71 0 435 165 0 0 chr1 140213197 140213282 -102451071 + (TGG)n Simple_repeat Simple_repeat 1 85 0 214 265 118 10 chr1 140213295 140213397 -102450956 + L3 LINE CR1 1214 1326 -251 199 360 80 7 chr1 140213553 140213703 -102450650 - L3 LINE CR1 -40 1537 1377 731 264 46 9 chr1 140213991 140214207 -102450146 + MIR SINE MIR 7 230 -32 351 300 42 21 chr1 140214232 140214409 -102449944 - L1MC/D LINE L1 -332 5789 5642 2486 66 0 10 chr1 140214409 140214713 -102449640 + AluY SINE Alu 1 301 -10 351 300 42 21 chr1 140214713 140214741 -102449612 - L1MC/D LINE L1 -479 5642 5616 245 210 12 99 chr1 140214771 140214852 -102449501 - L3 LINE CR1 -206 1371 1298 680 210 85 11 chr1 140214924 140215100 -102449253 - MIR SINE MIR -11 251 63 392 311 111 53 chr1 140215706 140216195 -102448158 - L2 LINE L2 -3 3269 2702 373 333 8 0 chr1 140216478 140216598 -102447755 - MIR SINE MIR -71 191 71 344 279 33 0 chr1 140217229 140217351 -102447002 - MIR SINE MIR -11 251 126 28 79 0 0 chr1 140218053 140218116 -102446237 + AT_rich Low_complexity Low_complexity 1 63 0 551 113 47 38 chr1 140218222 140218328 -102446025 + L1MA8 LINE L1 6181 6287 -4 275 293 36 36 chr1 140218469 140218609 -102445744 - L1ME LINE L1 -344 5777 5638 501 303 95 9 chr1 140218650 140218861 -102445492 + MIR SINE MIR 34 262 0 476 247 126 48 chr1 140218869 140219187 -102445166 - L1ME LINE L1 -536 5585 5254 23 54 0 0 chr1 140219445 140219482 -102444871 + AT_rich Low_complexity Low_complexity 1 37 0 305 276 87 39 chr1 140219488 140219774 -102444579 - L1ME LINE L1 -1301 4845 4546 377 215 75 0 chr1 140219822 140219915 -102444438 - L1MC3 LINE L1 -22 7763 7664 342 211 28 0 chr1 140219953 140220024 -102444329 - L1MC3 LINE L1 -91 7694 7622 1333 129 0 5 chr1 140220024 140220233 -102444120 + Tigger2 DNA MER2_type 1 208 -2510 790 178 6 55 chr1 140220234 140220397 -102443956 + Tigger2 DNA MER2_type 2564 2718 0 1136 205 46 0 chr1 140220397 140220656 -102443697 - L1MC3 LINE L1 -167 7618 7348 1675 142 215 24 chr1 140220665 140221004 -102443349 - MER4A LTR ERV1 0 664 261 558 116 53 21 chr1 140221004 140221099 -102443254 - MER4A LTR ERV1 -566 98 1 375 328 89 11 chr1 140221426 140221606 -102442747 + MIR SINE MIR 13 206 -56 192 312 21 54 chr1 140222567 140222660 -102441693 - MIR SINE MIR -62 200 111 376 310 54 0 chr1 140222868 140222997 -102441356 + L2 LINE L2 3137 3272 0 364 268 0 0 chr1 140223213 140223295 -102441058 - MIR3 SINE MIR -6 202 121 225 94 0 0 chr1 140224531 140224563 -102439790 + (TG)n Simple_repeat Simple_repeat 1 32 0 602 302 278 18 chr1 140225046 140225790 -102438563 + L2 LINE L2 1819 2756 -558 209 333 67 0 chr1 140225971 140226031 -102438322 + L2 LINE L2 3209 3272 0 529 273 61 0 chr1 140226033 140226165 -102438188 + L2 LINE L2 3174 3313 0 361 254 197 5 chr1 140226359 140226552 -102437801 + L2 LINE L2 3034 3263 -50 272 319 44 11 chr1 140226585 140226676 -102437677 - MIR SINE MIR -158 104 11 353 377 0 0 chr1 140227409 140227523 -102436830 + MIR SINE MIR 20 133 -129 1005 307 27 50 chr1 140227729 140228214 -102436139 + L2 LINE L2 2030 2503 -811 330 339 52 21 chr1 140228214 140228406 -102435947 + L2 LINE L2 2672 2869 -445 583 316 76 32 chr1 140228487 140228803 -102435550 + L2 LINE L2 2984 3313 0 465 296 34 17 chr1 140228901 140229080 -102435273 + MIR SINE MIR 54 235 -27 323 240 120 40 chr1 140229332 140229457 -102434896 - MIR SINE MIR -48 214 80 811 219 29 68 chr1 140229706 140229985 -102434368 - L1ME3A LINE L1 -1 6169 5902 290 123 231 0 chr1 140229986 140230051 -102434302 + MER116 DNA Mariner 1 80 0 683 237 57 24 chr1 140230051 140230286 -102434067 - L1ME3A LINE L1 -260 5902 5653 206 288 0 0 chr1 140230399 140230458 -102433895 + (CAG)n Simple_repeat Simple_repeat 2 60 0 976 212 160 10 chr1 140231333 140231621 -102432732 - L1ME LINE L1 -468 5702 5372 866 325 92 5 chr1 140232066 140232466 -102431887 - L3 LINE CR1 -103 1474 1040 582 311 88 12 chr1 140232441 140232769 -102431584 + L2 LINE L2 2911 3263 -50 * 272 319 44 11 chr1 140232802 140232893 -102431460 - MIR SINE MIR -158 104 11 697 202 0 0 chr1 140233625 140233739 -102430614 + MER81 DNA DNA 1 114 0 638 317 110 3 chr1 140234606 140234896 -102429457 - L3 LINE CR1 -99 1478 1158 186 189 38 57 chr1 140234937 140234990 -102429363 + L2 LINE L2 3262 3313 0 214 245 20 0 chr1 140235056 140235105 -102429248 - L3 LINE CR1 -618 959 910 422 241 45 36 chr1 140235844 140235956 -102428397 + L2 LINE L2 3160 3272 0 264 253 101 13 chr1 140236009 140236088 -102428265 + MIR SINE MIR 19 104 -158 291 28 0 0 chr1 140237393 140237429 -102426924 + (TGG)n Simple_repeat Simple_repeat 3 38 0 1458 34 23 0 chr1 140240133 140240309 -102424044 + L1PA4 LINE L1 5972 6151 -4 246 250 28 0 chr1 140240643 140240715 -102423638 + CT-rich Low_complexity Low_complexity 2 75 0 330 309 38 64 chr1 140240894 140241130 -102423223 - L2 LINE L2 -187 3085 2856 1436 232 85 43 chr1 140241416 140241899 -102422454 + MLT1D LTR MaLR 1 503 -2 2071 95 3 0 chr1 140242052 140242370 -102421983 + AluSq SINE Alu 1 319 0 316 337 117 6 chr1 140242390 140242553 -102421800 + MIR SINE MIR 22 202 -60 226 281 0 45 chr1 140242604 140242693 -102421660 + L2 LINE L2 3015 3099 -173 1987 103 3 10 chr1 140242709 140243001 -102421352 - AluSc SINE Alu -13 296 7 438 194 56 9 chr1 140243043 140243151 -102421202 + L2 LINE L2 2305 2417 -897 274 265 72 0 chr1 140243148 140243231 -102421122 + MIR3 SINE MIR 117 205 -3 * 215 365 0 0 chr1 140243972 140244035 -102420318 - MIR3 SINE MIR -9 199 137 314 306 0 10 chr1 140244068 140244166 -102420187 - MIR SINE MIR -65 143 61 3901 57 0 27 chr1 140244194 140244707 -102419646 + L1PA2 LINE L1 5657 6155 0 267 299 228 0 chr1 140244983 140245110 -102419243 + MIR3 SINE MIR 37 192 -16 308 334 86 50 chr1 140246162 140246500 -102417853 - L2 LINE L2 -371 2943 2594 236 235 51 71 chr1 140246845 140246943 -102417410 + MIR3 SINE MIR 88 183 -25 2404 36 0 0 chr1 140247557 140247838 -102416515 + AluY SINE Alu 29 309 -2 285 168 63 42 chr1 140248384 140248527 -102415826 + (TTTAA)n Simple_repeat Simple_repeat 5 150 0 388 319 104 82 chr1 140248535 140248805 -102415548 - L1MC/D LINE L1 -2005 5803 5528 474 274 57 0 chr1 140249962 140250119 -102414234 - L1MD2 LINE L1 -1 6358 6193 2225 89 10 3 chr1 140250335 140250638 -102413715 - AluSx SINE Alu -7 305 1 595 274 15 51 chr1 140250645 140250842 -102413511 - MIR SINE MIR -64 198 9 545 240 31 0 chr1 140251933 140252062 -102412291 + Charlie4 DNA MER1_type 1818 1950 -11 22 56 0 0 chr1 140252545 140252581 -102411772 + AT_rich Low_complexity Low_complexity 1 36 0 553 183 62 36 chr1 140253821 140254027 -102410326 - LTR45 LTR ERV1 -7 518 264 355 284 35 78 chr1 140255282 140255332 -102409021 + MIR SINE MIR 16 67 -195 2315 69 0 26 chr1 140255332 140255636 -102408717 + AluSg SINE Alu 2 297 -13 355 284 35 78 chr1 140255636 140255726 -102408627 + MIR SINE MIR 67 150 -112 293 303 182 40 chr1 140257247 140257791 -102406562 + L2 LINE L2 1909 2529 -785 324 284 74 0 chr1 140258728 140258823 -102405530 + L2 LINE L2 3212 3313 0 438 20 0 0 chr1 140259153 140259204 -102405149 + (CA)n Simple_repeat Simple_repeat 2 52 0 2271 162 31 28 chr1 140259821 140260279 -102404074 + L1MB1 LINE L1 5704 6162 -6 21 0 0 0 chr1 140260279 140260300 -102404053 + AT_rich Low_complexity Low_complexity 1 21 0 300 357 148 15 chr1 140261706 140262045 -102402308 + L3 LINE CR1 1193 1576 -1 192 125 0 0 chr1 140262858 140262890 -102401463 + (TG)n Simple_repeat Simple_repeat 1 32 0 944 241 19 5 chr1 140264597 140264809 -102399544 + Charlie1 DNA MER1_type 1 215 -2546 523 252 8 0 chr1 140264818 140264949 -102399404 + Charlie1 DNA MER1_type 2630 2761 0 320 229 122 60 chr1 140266775 140267176 -102397177 + Charlie2 DNA MER1_type 2176 2601 -261 18801 103 14 8 chr1 140267222 140272948 -102391405 + L1PA8 LINE L1 5 5801 -668 432 77 15 0 chr1 140272948 140273013 -102391340 + AluJ/FLAM SINE Alu 1 66 -246 207 264 33 11 chr1 140273373 140273464 -102390889 + T-rich Low_complexity Low_complexity 5 97 0 745 114 0 26 chr1 140273515 140273629 -102390724 + AluSp/q SINE Alu 192 302 -11 5089 75 10 4 chr1 140273629 140274320 -102390033 + L1PA8 LINE L1 5791 6485 -2 23 54 0 0 chr1 140274357 140274394 -102389959 + AT_rich Low_complexity Low_complexity 1 37 0 4543 174 22 21 chr1 140274399 140275434 -102388919 + L1MA4A LINE L1 5268 6303 0 2376 274 15 33 chr1 140275479 140276598 -102387755 + L1ME3A LINE L1 5053 6157 -13 757 304 55 52 chr1 140276629 140277086 -102387267 - L2 LINE L2 -411 2903 2446 211 229 0 0 chr1 140277090 140277138 -102387215 + (TTA)n Simple_repeat Simple_repeat 2 49 0 4087 236 68 9 chr1 140277235 140277343 -102387010 + L1ME2 LINE L1 3339 3439 -2707 994 256 48 43 chr1 140277343 140277738 -102386615 + MLT2C1 LTR ERVL 1 397 0 4087 236 68 9 chr1 140277738 140279058 -102385295 + L1ME2 LINE L1 3439 4851 -1295 1937 218 42 65 chr1 140279055 140279752 -102384601 + L1ME2 LINE L1 5351 6031 -133 * 289 316 13 0 chr1 140280416 140280495 -102383858 - MIR3 SINE MIR -52 156 77 1761 128 105 4 chr1 140280634 140280900 -102383453 - AluSx SINE Alu -19 293 1 739 288 149 41 chr1 140280900 140281587 -102382766 - L2 LINE L2 -14 3299 2534 212 189 0 0 chr1 140281762 140281799 -102382554 + T-rich Low_complexity Low_complexity 1 37 0 382 289 22 7 chr1 140281974 140282109 -102382244 + LTR67 LTR ERVL 36 172 -385 633 267 20 15 chr1 140282249 140282444 -102381909 + LTR67 LTR ERVL 354 549 -8 252 256 35 12 chr1 140282907 140282993 -102381360 - L3 LINE CR1 -54 1523 1436 383 307 94 9 chr1 140283036 140283248 -102381105 + L3 LINE CR1 1337 1566 -11 245 404 64 6 chr1 140283573 140283729 -102380624 + MIR3 SINE MIR 17 181 -27 21 57 0 0 chr1 140286665 140286700 -102377653 + AT_rich Low_complexity Low_complexity 1 35 0 3931 158 25 26 chr1 140286709 140287125 -102377228 - MER72 LTR ERV1 0 722 306 2178 112 0 14 chr1 140287125 140287421 -102376932 - AluSc SINE Alu -17 292 1 3931 158 25 26 chr1 140287421 140287727 -102376626 - MER72 LTR ERV1 -416 306 1 267 31 0 0 chr1 140287771 140287803 -102376550 + (CA)n Simple_repeat Simple_repeat 2 33 0 1194 189 4 0 chr1 140288538 140288786 -102375567 - L1P LINE L1 -4231 1915 1667 2386 94 7 0 chr1 140289286 140289595 -102374758 - AluSp SINE Alu -2 311 1 180 0 0 0 chr1 140290315 140290335 -102374018 + (CAA)n Simple_repeat Simple_repeat 2 21 0 552 30 0 0 chr1 140291567 140291633 -102372720 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 1236 193 60 45 chr1 140291949 140292280 -102372073 - MER2 DNA MER2_type -9 336 1 329 328 63 23 chr1 140293851 140294025 -102370328 - L2 LINE L2 0 3313 3133 2778 77 0 0 chr1 140294419 140294785 -102369568 + L1PA13 LINE L1 5790 6155 -8 575 169 8 8 chr1 140295171 140295301 -102369052 + L1MA10 LINE L1 5106 5235 -911 5313 31 34 0 chr1 140295303 140295943 -102368410 - L1PA4 LINE L1 -15 6140 5479 4238 159 31 23 chr1 140295946 140296554 -102367799 + L1MA10 LINE L1 5477 6078 -256 1656 151 77 47 chr1 140296554 140296918 -102367435 + THE1C LTR MaLR 1 375 0 9274 131 49 12 chr1 140296921 140298443 -102365910 + THE1C-int LTR MaLR 4 1580 0 1252 139 152 58 chr1 140298443 140298773 -102365580 + THE1B LTR MaLR 1 361 -3 4238 159 31 23 chr1 140298773 140298827 -102365526 + L1MA10 LINE L1 6079 6131 -203 248 68 0 23 chr1 140298827 140298871 -102365482 + (CAAAC)n Simple_repeat Simple_repeat 5 47 0 4238 159 31 23 chr1 140298871 140299039 -102365314 + L1MA10 LINE L1 6131 6320 -14 392 268 64 47 chr1 140299045 140299280 -102365073 - L1MC5 LINE L1 -74 7887 7649 414 252 311 13 chr1 140299359 140299510 -102364843 + Tigger5 DNA MER2_type 1 196 -2127 23 0 0 0 chr1 140299968 140299991 -102364362 + AT_rich Low_complexity Low_complexity 1 23 0 183 280 0 0 chr1 140300415 140300465 -102363888 - L2 LINE L2 -2 3311 3262 655 335 146 21 chr1 140300883 140301737 -102362616 - L2 LINE L2 -568 2746 1786 3678 176 21 55 chr1 140301739 140302659 -102361694 + L1 LINE L1 3227 4114 -2032 23 33 0 0 chr1 140302731 140302761 -102361592 + AT_rich Low_complexity Low_complexity 1 30 0 214 333 0 12 chr1 140302828 140302909 -102361444 + CT-rich Low_complexity Low_complexity 4 83 0 337 266 56 35 chr1 140303013 140303156 -102361197 - MIR SINE MIR -44 218 73 21 82 0 0 chr1 140303217 140303266 -102361087 + AT_rich Low_complexity Low_complexity 1 49 0 180 364 33 0 chr1 140304415 140304536 -102359817 - MIR SINE MIR -69 193 69 328 255 34 13 chr1 140307109 140307207 -102357146 + MIR SINE MIR 51 149 -59 413 261 42 25 chr1 140307236 140307355 -102356998 - L2 LINE L2 0 3313 3193 298 338 43 14 chr1 140307430 140307569 -102356784 - L2 LINE L2 -237 3076 2934 1489 42 10 16 chr1 140307569 140307761 -102356592 + AluY SINE Alu 121 311 0 391 316 62 40 chr1 140308451 140308676 -102355677 - L1ME3A LINE L1 -16 6154 5925 646 286 120 28 chr1 140308715 140309356 -102354997 - L1ME3A LINE L1 -206 5956 5257 1204 234 139 51 chr1 140309373 140310056 -102354297 - L1ME3A LINE L1 -1062 5084 4342 685 261 116 29 chr1 140310062 140310338 -102354015 + L2 LINE L2 2568 2867 -447 300 278 33 11 chr1 140311408 140311498 -102352855 - HAL1b LINE L1 -93 1255 1164 574 280 103 34 chr1 140311524 140312021 -102352332 - HAL1b LINE L1 -258 1090 560 909 214 36 75 chr1 140312652 140313072 -102351281 + L1PA15-16 LINE L1 3 392 -6471 8834 31 2 0 chr1 140313139 140314253 -102350100 + L1P LINE L1 3137 4252 -1894 214 338 0 15 chr1 140314626 140314694 -102349659 - MIR SINE MIR -78 130 64 258 143 0 0 chr1 140316883 140316932 -102347421 + (CAT)n Simple_repeat Simple_repeat 2 50 0 3713 134 23 51 chr1 140317023 140317763 -102346590 - L1MA4A LINE L1 -5 6298 5580 13370 199 35 61 chr1 140317763 140321624 -102342729 - L1 LINE L1 -1025 5823 1910 589 262 0 0 chr1 140321624 140321750 -102342603 - FLAM_A SINE Alu -11 131 6 13370 199 35 61 chr1 140321750 140323608 -102340745 - L1 LINE L1 -4938 1910 6 437 317 19 19 chr1 140323664 140323825 -102340528 - L1M3c LINE L1 -5980 161 1 634 257 75 31 chr1 140324156 140324525 -102339828 - MLT1H LTR MaLR -13 536 106 307 367 44 6 chr1 140324527 140324685 -102339668 + MLT1I LTR MaLR 194 357 -52 502 284 229 13 chr1 140324797 140325251 -102339102 - HAL1 LINE L1 -345 2162 1611 416 296 47 30 chr1 140325429 140325662 -102338691 - HAL1 LINE L1 -1151 1356 1120 1088 138 13 85 chr1 140326453 140326677 -102337676 - THE1C LTR MaLR 0 375 168 299 267 113 14 chr1 140326979 140327200 -102337153 + L1M4 LINE L1 2959 3201 -2945 434 291 51 17 chr1 140327230 140327522 -102336831 + L1M4 LINE L1 3286 3587 -2559 1890 121 59 31 chr1 140327687 140327977 -102336376 + AluSx SINE Alu 1 298 -14 222 37 0 0 chr1 140328020 140328047 -102336306 + (A)n Simple_repeat Simple_repeat 1 27 0 240 298 75 65 chr1 140328047 140328543 -102335810 + L1M4 LINE L1 3948 4448 -1698 299 254 118 30 chr1 140328553 140328722 -102335631 + L1M4 LINE L1 4501 4684 -1462 187 261 31 46 chr1 140329117 140329182 -102335171 + L2 LINE L2 3115 3178 -94 218 330 11 11 chr1 140329578 140329666 -102334687 - MIR3 SINE MIR -106 102 15 428 327 52 33 chr1 140330570 140330781 -102333572 - MIR SINE MIR 0 262 48 253 100 40 0 chr1 140331757 140331807 -102332546 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 2535 40 7 3 chr1 140332782 140333082 -102331271 + AluY SINE Alu 5 305 -6 182 114 0 29 chr1 140334070 140334105 -102330248 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 206 219 16 0 chr1 140334132 140334196 -102330157 + GA-rich Low_complexity Low_complexity 2 66 0 264 299 15 15 chr1 140334234 140334301 -102330052 + MIR SINE MIR 32 98 -164 294 287 157 9 chr1 140334552 140334667 -102329686 - MIR3 SINE MIR -44 164 33 410 328 78 11 chr1 140336147 140336327 -102328026 + MIR SINE MIR 63 254 -8 1392 154 17 0 chr1 140336457 140336691 -102327662 + L1MA8 LINE L1 6040 6277 -14 198 330 29 10 chr1 140337134 140337237 -102327116 - L2 LINE L2 -35 3237 3133 630 104 0 0 chr1 140337708 140337804 -102326549 + (CA)n Simple_repeat Simple_repeat 1 96 0 2087 119 7 30 chr1 140337899 140338202 -102326151 - AluSx SINE Alu -16 296 1 183 363 80 0 chr1 140338870 140338983 -102325370 + L2 LINE L2 3150 3271 -1 295 282 121 34 chr1 140339305 140339454 -102324899 + MIR3 SINE MIR 40 201 -7 305 292 0 78 chr1 140341191 140341345 -102323008 + L2 LINE L2 2174 2315 -999 24 32 0 0 chr1 140341423 140341454 -102322899 + AT_rich Low_complexity Low_complexity 1 31 0 617 141 10 0 chr1 140341767 140341866 -102322487 + L1MC4 LINE L1 7803 7902 -140 12642 32 25 4 chr1 140341874 140343421 -102320932 - L1PA3 LINE L1 -2066 4080 2501 11427 25 2 12 chr1 140343408 140345371 -102318982 + L1PA3 LINE L1 4061 6003 -152 * 185 317 33 0 chr1 140345479 140345539 -102318814 - MIR SINE MIR -185 77 16 29 0 0 0 chr1 140345579 140345608 -102318745 + AT_rich Low_complexity Low_complexity 1 29 0 691 313 65 27 chr1 140345728 140345923 -102318430 + L1M4 LINE L1 2913 3099 -3047 2848 10 0 0 chr1 140345923 140346230 -102318123 + AluYa5 SINE Alu 1 307 -4 691 313 65 27 chr1 140346230 140346446 -102317907 + L1M4 LINE L1 3099 3340 -2806 538 167 22 0 chr1 140346532 140346622 -102317731 - MER92B LTR ERV1 -33 603 512 357 311 11 33 chr1 140347007 140347187 -102317166 + LTR16C LTR ERVL 316 491 0 288 235 80 49 chr1 140347200 140347362 -102316991 - Charlie2 DNA MER1_type -44 2818 2652 979 246 81 45 chr1 140347362 140347867 -102316486 - L1MC5 LINE L1 -60 7901 7379 655 285 76 53 chr1 140347969 140348288 -102316065 + LTR16A1 LTR ERVL 153 457 0 491 331 93 17 chr1 140348322 140348675 -102315678 + HERV16 LTR ERVL 43 422 -4574 390 353 11 43 chr1 140349523 140349707 -102314646 + HERV16 LTR ERVL 1406 1583 -3413 2119 162 25 22 chr1 140349726 140350091 -102314262 - MER47A DNA MER2_type 0 366 1 1509 308 88 35 chr1 140350100 140350486 -102313867 + HERV16 LTR ERVL 1678 2117 -2879 2415 78 0 0 chr1 140350486 140350779 -102313574 + AluY SINE Alu 11 303 -8 1509 308 88 35 chr1 140350779 140351070 -102313283 + HERV16 LTR ERVL 2117 2391 -2605 7343 139 4 18 chr1 140351154 140352312 -102312041 - L1M3f LINE L1 -4118 1210 69 552 269 85 19 chr1 140352485 140352697 -102311656 - L1ME3 LINE L1 -3 6159 5934 222 37 0 0 chr1 140355558 140355585 -102308768 + (CTG)n Simple_repeat Simple_repeat 1 27 0 390 21 0 0 chr1 140355859 140355906 -102308447 + (TG)n Simple_repeat Simple_repeat 1 47 0 221 341 57 11 chr1 140355914 140356002 -102308351 + MIR3 SINE MIR 11 102 -106 309 253 171 20 chr1 140356110 140356256 -102308097 + MIR3 SINE MIR 20 187 -21 1427 183 27 89 chr1 140357178 140357549 -102306804 + L1P3 LINE L1 277 624 -5837 29897 49 9 1 chr1 140357655 140361366 -102302987 - L1P LINE L1 -1708 4438 697 241 36 0 0 chr1 140361366 140361394 -102302959 + L1P3 LINE L1 963 990 -5471 245 357 57 14 chr1 140361923 140362063 -102302290 - MIR SINE MIR -18 244 99 768 169 68 17 chr1 140362341 140362518 -102301835 - MER53 DNA DNA -3 186 1 240 296 28 83 chr1 140362775 140362883 -102301470 - MIR3 SINE MIR -46 162 61 325 278 71 24 chr1 140363695 140363821 -102300532 - MIR3 SINE MIR -65 143 12 694 0 25 0 chr1 140363956 140364036 -102300317 - L1PA4 LINE L1 0 6155 6074 14268 107 105 11 chr1 140364167 140365771 -102298582 - L1PBa LINE L1 -3949 2913 968 7824 105 6 22 chr1 140365771 140366860 -102297493 + MER11C LTR ERVK 1 1071 0 14268 107 105 11 chr1 140366860 140367569 -102296784 - L1PBa LINE L1 -5894 968 327 5234 257 63 28 chr1 140367687 140368022 -102296331 - L1M4 LINE L1 -1854 4528 4206 2740 29 0 0 chr1 140368022 140368328 -102296025 - AluYa5 SINE Alu -5 306 1 1853 169 3 3 chr1 140368328 140368624 -102295729 - AluJb SINE Alu -15 297 2 5234 257 63 28 chr1 140368624 140370253 -102294100 - L1M4 LINE L1 -2175 4207 2495 475 267 14 62 chr1 140370264 140370474 -102293879 + LTR4 LTR ERV1 1 200 -396 710 287 29 14 chr1 140370661 140370936 -102293417 + LTR4 LTR ERV1 317 595 -1 2265 226 50 19 chr1 140370938 140371961 -102292392 - L1M4 LINE L1 -3885 2499 1350 1472 202 14 22 chr1 140371951 140372312 -102292041 - L1MC3 LINE L1 -1839 5946 5589 * 196 247 26 65 chr1 140373334 140373411 -102290942 - MIR SINE MIR -44 218 145 245 188 89 71 chr1 140373872 140373984 -102290369 - L1ME4a LINE L1 -40 6081 5968 359 68 41 14 chr1 140374523 140374596 -102289757 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 270 0 0 0 chr1 140376286 140376316 -102288037 + (A)n Simple_repeat Simple_repeat 1 30 0 276 331 47 27 chr1 140378371 140378519 -102285834 + MIR SINE MIR 93 243 -19 366 151 0 0 chr1 140378547 140378620 -102285733 + (CAT)n Simple_repeat Simple_repeat 2 74 0 1333 132 4 40 chr1 140378709 140378960 -102285393 - L1MA4A LINE L1 -5 6298 6057 4323 61 0 0 chr1 140378966 140379507 -102284846 - L1PA7 LINE L1 -7 6147 5607 11118 30 1 1 chr1 140379529 140381655 -102282698 - L1PA3 LINE L1 0 6155 4059 2689 49 19 2 chr1 140381655 140382209 -102282144 - L1PA7 LINE L1 -544 5610 5051 * 3426 89 74 2 chr1 140382207 140382737 -102281616 + L1P LINE L1 4300 4867 -1279 2952 182 19 9 chr1 140382737 140383314 -102281039 - L1MA4A LINE L1 -231 6072 5490 5062 146 18 0 chr1 140383314 140384243 -102280110 - L1PA13 LINE L1 -1 6162 5229 257 61 0 0 chr1 140384243 140384276 -102280077 - AluSq/x SINE Alu -175 128 96 11282 229 32 17 chr1 140384277 140387860 -102276493 - L1PA13 LINE L1 -3131 3666 1 2879 267 58 30 chr1 140387892 140389711 -102274642 - L1M4 LINE L1 -2400 3982 2112 1191 157 39 0 chr1 140389729 140389933 -102274420 + AluSg/x SINE Alu 83 294 -16 290 153 34 0 chr1 140389963 140390022 -102274331 - L1M4 LINE L1 -4318 2066 2006 1701 246 69 6 chr1 140390029 140390554 -102273799 - L1M4 LINE L1 -4480 1904 1347 883 222 58 19 chr1 140390537 140390794 -102273559 - L1MC3 LINE L1 -1833 5952 5686 * 524 43 0 0 chr1 140390814 140390883 -102273470 - L1PA3 LINE L1 -5 6150 6082 246 219 86 57 chr1 140392014 140392119 -102272234 - MIR SINE MIR -18 244 137 309 277 45 27 chr1 140392574 140392686 -102271667 - L1ME4a LINE L1 -40 6081 5968 25 0 0 0 chr1 140392740 140392765 -102271588 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr1 140392959 140392998 -102271355 + AT_rich Low_complexity Low_complexity 1 39 0 986 261 65 12 chr1 140393088 140393413 -102270940 + L1MD2 LINE L1 5842 6183 -176 207 114 0 0 chr1 140393612 140393647 -102270706 + (TG)n Simple_repeat Simple_repeat 1 35 0 249 239 0 0 chr1 140394343 140394389 -102269964 + polypyrimidine Low_complexity Low_complexity 1 46 0 228 293 40 13 chr1 140395259 140395334 -102269019 - MIR SINE MIR -87 121 45 279 133 0 0 chr1 140397549 140397594 -102266759 + (CACCAT)n Simple_repeat Simple_repeat 1 45 0 1068 65 0 0 chr1 140397687 140397826 -102266527 - L1PA4 LINE L1 -3 6152 6014 3892 180 17 16 chr1 140397836 140398658 -102265695 - L1MA4A LINE L1 -6 6297 5475 * 10036 202 20 13 chr1 140398642 140400243 -102264110 - L1PA13 LINE L1 -4 6810 5223 2297 114 0 0 chr1 140400243 140400551 -102263802 - AluY SINE Alu -3 308 1 10036 202 20 13 chr1 140400551 140401036 -102263317 - L1PA13 LINE L1 -1591 5223 4743 3375 194 26 85 chr1 140401036 140402064 -102262289 + LTR5 LTR ERVK 2 969 0 10036 202 20 13 chr1 140402064 140403098 -102261255 - L1PA13 LINE L1 -2071 4743 3676 1230 143 0 0 chr1 140403113 140403295 -102261058 - AluY SINE Alu -37 274 93 10882 233 36 25 chr1 140403295 140406917 -102257436 - L1PA13 LINE L1 -3131 3666 1 2068 258 68 41 chr1 140406934 140408017 -102256336 - L1M4c LINE L1 -2384 3998 2886 836 203 129 7 chr1 140408024 140408334 -102256019 - L1M4c LINE L1 -3940 2444 2097 1094 159 43 64 chr1 140408338 140408571 -102255782 + AluSg/x SINE Alu 85 312 0 1609 250 57 5 chr1 140408613 140409195 -102255158 - L1M4c LINE L1 -4318 2066 1356 548 229 108 0 chr1 140409164 140409321 -102255032 - L1M4c LINE L1 -4864 1520 1347 * 1033 244 52 12 chr1 140409310 140409654 -102254699 - L1MC3 LINE L1 -1839 6182 5825 1435 247 65 47 chr1 140409794 140410309 -102254044 - L1MC3 LINE L1 -3230 3152 2648 7739 40 3 0 chr1 140410309 140412022 -102252331 + L1PA4 LINE L1 4439 6155 0 1435 247 65 47 chr1 140412022 140412550 -102251803 - L1MC3 LINE L1 -3734 2648 2097 1341 168 9 0 chr1 140412554 140412780 -102251573 + AluSg/x SINE Alu 85 312 0 1753 259 52 2 chr1 140412791 140413386 -102250967 - L1MC3 LINE L1 -4299 2085 1366 1071 239 51 20 chr1 140413387 140413739 -102250614 - L1MC3 LINE L1 -1834 5951 5589 227 229 94 52 chr1 140414736 140414832 -102249521 - MIR SINE MIR -18 244 145 22 0 0 0 chr1 140414997 140415019 -102249334 + AT_rich Low_complexity Low_complexity 1 22 0 1977 141 3 0 chr1 140415023 140415321 -102249032 - AluSg1 SINE Alu -10 299 1 264 268 45 27 chr1 140415629 140415741 -102248612 - L1ME4a LINE L1 -40 6081 5968 21 57 0 0 chr1 140416014 140416049 -102248304 + AT_rich Low_complexity Low_complexity 1 35 0 644 251 59 16 chr1 140416135 140416456 -102247897 + L1MD2 LINE L1 5839 6084 -94 414 0 0 0 chr1 140416651 140416697 -102247656 + (TG)n Simple_repeat Simple_repeat 1 46 0 205 217 22 0 chr1 140417381 140417427 -102246926 + CT-rich Low_complexity Low_complexity 1 47 0 201 39 0 0 chr1 140420569 140420595 -102243758 + (CAT)n Simple_repeat Simple_repeat 1 26 0 4435 149 12 15 chr1 140420685 140421501 -102242852 - L1MA4A LINE L1 -5 6298 5485 3574 158 15 9 chr1 140420830 140421496 -102242857 - L1MA4A LINE L1 -140 6163 5491 8477 183 12 19 chr1 140421496 140424138 -102240215 - L1PA13 LINE L1 -6 6808 4185 3795 216 18 2 chr1 140424138 140425129 -102239224 - L1PA13 LINE L1 -2840 3957 2951 618 152 76 0 chr1 140425127 140425232 -102239121 - L1PA13 LINE L1 -6674 113 1 * 2982 250 93 42 chr1 140425250 140427300 -102237053 - L1M4 LINE L1 -2385 3997 1789 2289 96 0 0 chr1 140427300 140427591 -102236762 - AluSg SINE Alu -19 291 1 2982 250 93 42 chr1 140427591 140428042 -102236311 - L1M4 LINE L1 -4593 1789 1362 1173 198 48 36 chr1 140428040 140428398 -102235955 - L1MC3 LINE L1 -1835 5950 5589 * 247 195 106 62 chr1 140429357 140429470 -102234883 - MIR SINE MIR -10 252 135 23 54 0 0 chr1 140430104 140430141 -102234212 + AT_rich Low_complexity Low_complexity 1 37 0 231 114 0 0 chr1 140430626 140430661 -102233692 + (TG)n Simple_repeat Simple_repeat 1 35 0 244 324 0 0 chr1 140432357 140432425 -102231928 - MIR SINE MIR -96 112 45 184 333 35 35 chr1 140434468 140434612 -102229741 + MIR SINE MIR 100 243 -19 180 0 0 0 chr1 140434665 140434685 -102229668 + (TCC)n Simple_repeat Simple_repeat 2 21 0 3889 170 34 15 chr1 140434785 140435591 -102228762 - L1MA4A LINE L1 -6 6297 5477 10694 184 40 11 chr1 140435591 140437952 -102226401 - L1PA13 LINE L1 -18 6796 4326 351 0 0 0 chr1 140437952 140437991 -102226362 + (TG)n Simple_repeat Simple_repeat 2 40 0 10694 184 40 11 chr1 140437991 140438774 -102225579 - L1PA13 LINE L1 -2488 4326 3567 10804 200 27 23 chr1 140438787 140441551 -102222802 - L1PA13 LINE L1 -4014 2783 2 2489 265 62 29 chr1 140441570 140442274 -102222079 - L1M4 LINE L1 -2385 3997 3318 2366 97 0 0 chr1 140442274 140442574 -102221779 + AluY SINE Alu 1 300 -11 2489 265 62 29 chr1 140442574 140443479 -102220874 - L1M4 LINE L1 -3064 3318 2325 318 242 52 7 chr1 140443507 140443660 -102220693 - L1M4 LINE L1 -4117 2267 2108 1233 127 73 36 chr1 140443674 140443894 -102220459 + AluSg/x SINE Alu 85 312 0 1422 260 47 10 chr1 140443920 140444540 -102219813 - L1M4 LINE L1 -4307 2077 1338 1196 224 22 22 chr1 140444516 140444878 -102219475 - L1MC3 LINE L1 -1835 6186 5825 * 258 211 110 46 chr1 140445872 140445981 -102218372 - MIR SINE MIR -10 252 137 306 286 45 27 chr1 140446433 140446545 -102217808 - L1ME4a LINE L1 -40 6081 5968 21 36 0 0 chr1 140446595 140446623 -102217730 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr1 140447102 140447141 -102217212 + (TG)n Simple_repeat Simple_repeat 1 39 0 1731 157 10 0 chr1 140451037 140451349 -102213004 + L1PA15 LINE L1 5600 5914 -251 * 2607 170 10 10 chr1 140451347 140451846 -102212507 + L1MA6 LINE L1 5557 6055 -245 204 186 88 9 chr1 140451854 140451967 -102212386 + (TATAA)n Simple_repeat Simple_repeat 1 122 0 1201 129 5 5 chr1 140452024 140452212 -102212141 + L1PA16 LINE L1 5782 5972 -194 1614 194 33 3 chr1 140452212 140452573 -102211780 + L1MB7 LINE L1 5808 6184 0 1201 129 5 5 chr1 140452573 140452586 -102211767 + L1PA16 LINE L1 5971 5983 -183 754 193 25 59 chr1 140453055 140453294 -102211059 - L1PA16 LINE L1 -1608 4538 4308 5765 128 2 10 chr1 140453296 140454876 -102209477 + L1PA16 LINE L1 4550 6129 -37 2165 134 129 8 chr1 140454876 140455257 -102209096 - MSTA LTR MaLR 0 428 2 5765 128 2 10 chr1 140455257 140455286 -102209067 + L1PA16 LINE L1 6129 6157 -9 303 303 39 26 chr1 140455874 140456029 -102208324 + MLT1J2 LTR MaLR 1 157 -293 353 309 89 0 chr1 140456121 140456289 -102208064 + MLT1J2 LTR MaLR 266 448 -2 207 167 0 0 chr1 140456842 140456878 -102207475 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 358 130 16 chr1 140458764 140458887 -102205466 + MIR3 SINE MIR 46 182 -26 2005 133 51 26 chr1 140460425 140460777 -102203576 + THE1B LTR MaLR 4 364 0 537 143 0 38 chr1 140461866 140461971 -102202382 - L1PA16 LINE L1 -346 5820 5720 * 1408 208 26 0 chr1 140461969 140462277 -102202076 + L1PA16 LINE L1 5823 6138 -28 221 231 0 0 chr1 140462293 140462332 -102202021 + G-rich Low_complexity Low_complexity 5 43 0 2373 106 53 53 chr1 140464480 140464878 -102199475 + MER48 LTR ERV1 1 398 0 721 206 8 0 chr1 140465025 140465156 -102199197 - FLAM_A SINE Alu 0 133 2 225 216 20 0 chr1 140465305 140465356 -102198997 + MIR SINE MIR 98 149 -59 3874 61 63 0 chr1 140465381 140465906 -102198447 - LTR6B LTR ERV1 0 558 1 1598 117 43 23 chr1 140466169 140466493 -102197860 - MER4A LTR ERV1 -19 645 257 572 75 11 21 chr1 140466489 140466582 -102197771 - MER4A LTR ERV1 -566 98 7 * 3427 90 35 25 chr1 140466589 140467153 -102197200 - MER4A-int LTR ERV1 0 6598 6029 1032 89 24 0 chr1 140467154 140467322 -102197031 - MER4-int LTR ERV1 -2041 4557 4386 7398 209 47 49 chr1 140467328 140469758 -102194595 - L1P3 LINE L1 -3939 2522 10 3079 35 0 0 chr1 140469797 140470199 -102194154 + L1PA4 LINE L1 5784 6185 0 266 219 49 0 chr1 140470200 140470282 -102194071 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 301 190 51 0 chr1 140470326 140470405 -102193948 + L1MC4 LINE L1 7960 8042 0 242 325 131 31 chr1 140470405 140470596 -102193757 + L2 LINE L2 2698 2907 -407 288 0 0 0 chr1 140472014 140472046 -102192307 + (CA)n Simple_repeat Simple_repeat 2 33 0 190 317 81 32 chr1 140472145 140472268 -102192085 - L2 LINE L2 -18 3295 3167 343 161 18 27 chr1 140473387 140473499 -102190854 + (CA)n Simple_repeat Simple_repeat 1 111 0 336 335 58 58 chr1 140473824 140474084 -102190269 - L2 LINE L2 -4 3268 3009 4208 154 13 16 chr1 140474530 140475231 -102189122 - L1MB1 LINE L1 -1 6167 5469 1857 255 28 13 chr1 140475561 140476186 -102188167 + L1ME3A LINE L1 4458 5931 -239 351 235 157 17 chr1 140476205 140476320 -102188033 + L1ME3A LINE L1 6024 6154 -16 21 36 0 0 chr1 140476359 140476387 -102187966 + AT_rich Low_complexity Low_complexity 1 28 0 243 272 175 55 chr1 140476819 140477036 -102187317 + MIR SINE MIR 20 262 0 401 333 100 0 chr1 140477191 140477341 -102187012 + MIR3 SINE MIR 29 193 -15 921 284 80 53 chr1 140477634 140478159 -102186194 + MER34 LTR ERV1 1 539 -3 264 247 52 31 chr1 140478659 140478756 -102185597 + MER5B DNA MER1_type 80 178 0 481 299 95 36 chr1 140479259 140479480 -102184873 + MIR SINE MIR 29 262 0 293 263 21 17 chr1 140479508 140479591 -102184762 - MIR SINE MIR -120 88 4 196 250 0 0 chr1 140480030 140480074 -102184279 + MIR SINE MIR 91 134 -128 252 306 0 24 chr1 140480309 140480394 -102183959 + CT-rich Low_complexity Low_complexity 3 85 0 216 0 0 0 chr1 140480749 140480773 -102183580 + (CA)n Simple_repeat Simple_repeat 1 24 0 489 299 30 0 chr1 140480925 140481059 -102183294 - MIR SINE MIR -72 190 53 199 344 38 23 chr1 140481217 140481348 -102183005 + MIR3 SINE MIR 35 167 -41 228 185 0 0 chr1 140482673 140482727 -102181626 + (CAGT)n Simple_repeat Simple_repeat 4 57 0 180 239 0 90 chr1 140483000 140483067 -102181286 - L2 LINE L2 -2 3311 3251 292 218 58 46 chr1 140484053 140484140 -102180213 + MIR3 SINE MIR 87 174 -34 180 239 0 90 chr1 140484227 140484294 -102180059 + L2 LINE L2 3251 3311 -2 236 340 104 14 chr1 140485529 140485673 -102178680 - MIR3 SINE MIR -20 188 32 207 356 171 6 chr1 140485713 140486053 -102178300 - L2 LINE L2 -1 3312 2917 300 267 14 27 chr1 140487529 140487675 -102176678 + (CA)n Simple_repeat Simple_repeat 2 145 0 303 71 0 0 chr1 140487721 140487763 -102176590 + (TC)n Simple_repeat Simple_repeat 2 43 0 12275 180 48 12 chr1 140488004 140491263 -102173090 + L1MA5 LINE L1 2654 6022 -278 8579 239 48 4 chr1 140491364 140493640 -102170713 + L1 LINE L1 2947 5321 -825 207 186 0 23 chr1 140493783 140493826 -102170527 + CT-rich Low_complexity Low_complexity 3 44 0 1538 156 120 7 chr1 140493828 140494103 -102170250 - AluSg SINE Alu -4 306 1 278 132 19 0 chr1 140494108 140494161 -102170192 + CT-rich Low_complexity Low_complexity 4 57 0 259 175 0 0 chr1 140494329 140494369 -102169984 - L1M3f LINE L1 -5275 53 14 873 224 71 80 chr1 140494372 140494698 -102169655 + MLT2C2 LTR ERVL 102 424 -40 219 188 0 0 chr1 140494733 140494781 -102169572 + (CATA)n Simple_repeat Simple_repeat 2 49 0 343 122 0 0 chr1 140494784 140494833 -102169520 + MLT2D LTR ERVL 366 414 0 833 369 25 5 chr1 140494833 140495237 -102169116 + HERV16 LTR ERVL 2408 2819 -2177 298 242 23 23 chr1 140495238 140495370 -102168983 - L1M4 LINE L1 -2795 3351 3220 320 224 66 0 chr1 140495374 140495450 -102168903 + L1MCb LINE L1 732 812 -5233 2320 214 184 36 chr1 140495453 140496350 -102168003 + L1MCb LINE L1 1060 2089 -4475 252 146 21 0 chr1 140496452 140496500 -102167853 + L1MB8 LINE L1 6130 6178 0 4851 213 30 70 chr1 140497208 140497913 -102166440 + MER31-int LTR ERV1 2463 3081 -1855 5909 79 66 24 chr1 140497913 140498706 -102165647 + LTR12 LTR ERV1 1 826 0 4851 213 30 70 chr1 140498706 140499465 -102164888 + MER31-int LTR ERV1 3081 3869 -1067 436 326 38 5 chr1 140500042 140500226 -102164127 + MIR3 SINE MIR 18 207 -1 216 294 0 0 chr1 140501253 140501321 -102163032 + (TGAG)n Simple_repeat Simple_repeat 1 68 0 300 352 0 0 chr1 140501328 140501433 -102162920 + (ACTG)n Simple_repeat Simple_repeat 3 107 0 2082 150 3 0 chr1 140501574 140501880 -102162473 - AluSx SINE Alu -5 307 1 1170 61 0 17 chr1 140501901 140502081 -102162272 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2902 148 21 12 chr1 140502112 140502593 -102161760 - MER31A LTR ERV1 0 485 1 193 241 72 48 chr1 140503162 140503245 -102161108 + L2 LINE L2 2737 2821 -493 2240 123 0 0 chr1 140503289 140503591 -102160762 + AluY SINE Alu 1 302 -9 382 305 116 53 chr1 140503629 140503931 -102160422 + L2 LINE L2 2940 3260 -12 880 246 32 33 chr1 140504450 140504727 -102159626 + MLT1I LTR MaLR 98 406 -3 228 35 0 0 chr1 140504877 140504906 -102159447 + (TG)n Simple_repeat Simple_repeat 1 29 0 324 286 153 10 chr1 140505648 140505746 -102158607 - MIR SINE MIR -115 147 36 4284 83 20 0 chr1 140507015 140507558 -102156795 - MER41A LTR ERV1 0 554 1 256 368 0 0 chr1 140507867 140507954 -102156399 + (CA)n Simple_repeat Simple_repeat 1 87 0 6638 27 10 0 chr1 140508359 140509133 -102155220 - L1PA2 LINE L1 -1278 4868 4087 8469 10 0 0 chr1 140509133 140510436 -102153917 + L1PA2 LINE L1 4848 6151 -4 484 168 56 0 chr1 140510477 140510584 -102153769 - L1MD3 LINE L1 -1 7994 7882 2263 126 44 13 chr1 140510619 140511009 -102153344 - L1MA8 LINE L1 -1 6290 5889 187 326 101 0 chr1 140511046 140511175 -102153178 + MIR SINE MIR 94 235 -27 213 39 0 0 chr1 140511191 140511217 -102153136 + (CA)n Simple_repeat Simple_repeat 2 27 0 360 280 71 36 chr1 140511439 140511607 -102152746 - MIR3 SINE MIR -11 197 24 216 239 106 62 chr1 140512347 140512460 -102151893 - MIR3 SINE MIR -89 119 2 284 287 0 0 chr1 140512736 140512837 -102151516 + (TG)n Simple_repeat Simple_repeat 1 101 0 24 0 0 0 chr1 140512984 140513008 -102151345 + AT_rich Low_complexity Low_complexity 1 24 0 1932 131 42 0 chr1 140513136 140513448 -102150905 + L1MA5 LINE L1 5974 6298 -2 23 33 0 0 chr1 140514138 140514168 -102150185 + AT_rich Low_complexity Low_complexity 1 30 0 283 136 0 0 chr1 140514224 140514268 -102150085 + L1M1 LINE L1 5696 5739 -561 635 267 69 64 chr1 140514651 140515055 -102149298 + L2 LINE L2 2844 3249 -64 1441 174 46 53 chr1 140515440 140515766 -102148587 - AluSx SINE Alu 0 312 1 1293 169 58 19 chr1 140516817 140517078 -102147275 - Charlie1 DNA MER1_type -304 2457 2187 3932 243 104 17 chr1 140517079 140518469 -102145884 + L1MD2 LINE L1 4181 5797 -562 1711 187 23 3 chr1 140518469 140518769 -102145584 + AluJo SINE Alu 1 306 -6 3932 243 104 17 chr1 140518769 140519351 -102145002 + L1MD2 LINE L1 5797 6327 -32 312 161 184 16 chr1 140519351 140519455 -102144898 + Charlie1 DNA MER1_type 2392 2504 -257 1089 193 31 86 chr1 140519528 140519845 -102144508 - Charlie1a DNA MER1_type -554 901 603 1214 251 121 45 chr1 140519845 140520307 -102144046 - MLT1E LTR MaLR 0 593 97 771 237 0 0 chr1 140520313 140520493 -102143860 + FRAM SINE Alu 11 190 0 1383 189 30 0 chr1 140520563 140520827 -102143526 - Charlie1a DNA MER1_type -838 617 346 622 293 22 31 chr1 140521324 140521549 -102142804 + Charlie1a DNA MER1_type 1 223 -1232 1873 137 54 0 chr1 140521626 140521904 -102142449 + AluSq SINE Alu 1 293 -20 256 229 0 0 chr1 140522427 140522488 -102141865 + MER3 DNA MER1_type 149 209 0 250 317 76 62 chr1 140522646 140522936 -102141417 - LTR16C LTR ERVL -3 488 195 314 260 10 73 chr1 140523835 140524055 -102140298 + T-rich Low_complexity Low_complexity 1 206 0 580 218 6 12 chr1 140524543 140524708 -102139645 + CT-rich Low_complexity Low_complexity 3 166 0 195 269 39 13 chr1 140525855 140525933 -102138420 - MIR3 SINE MIR -31 177 98 318 50 0 0 chr1 140528199 140528239 -102136114 + (CA)n Simple_repeat Simple_repeat 1 40 0 189 74 0 0 chr1 140528480 140528507 -102135846 + (CA)n Simple_repeat Simple_repeat 1 27 0 233 29 29 0 chr1 140528550 140528584 -102135769 + (TTA)n Simple_repeat Simple_repeat 3 37 0 23011 35 3 2 chr1 140528584 140532165 -102132188 - L1PA3 LINE L1 -18 6137 2552 2846 25 0 0 chr1 140532165 140532520 -102131833 + L1PA3 LINE L1 2192 2546 -3600 267 363 25 55 chr1 140532625 140532826 -102131527 - MIR3 SINE MIR -3 205 11 542 311 66 17 chr1 140533258 140533741 -102130612 + L1ME4a LINE L1 5508 6014 -107 10804 206 30 33 chr1 140533952 140536717 -102127636 - L1PA13 LINE L1 -4014 2783 2 2406 265 62 30 chr1 140536736 140537442 -102126911 - L1M4 LINE L1 -2385 3997 3315 2366 97 0 0 chr1 140537442 140537742 -102126611 + AluY SINE Alu 1 300 -11 2406 265 62 30 chr1 140537742 140538647 -102125706 - L1M4 LINE L1 -3067 3315 2325 318 242 52 7 chr1 140538675 140538828 -102125525 - L1M4 LINE L1 -4117 2267 2108 1233 127 73 36 chr1 140538842 140539062 -102125291 + AluSg/x SINE Alu 85 312 0 1422 260 47 10 chr1 140539088 140539708 -102124645 - L1M4 LINE L1 -4307 2077 1338 1196 224 22 22 chr1 140539684 140540046 -102124307 - L1MC3 LINE L1 -1835 6186 5825 * 258 211 110 46 chr1 140541040 140541149 -102123204 - MIR SINE MIR -10 252 137 306 286 45 27 chr1 140541601 140541713 -102122640 - L1ME4a LINE L1 -40 6081 5968 21 36 0 0 chr1 140541763 140541791 -102122562 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr1 140542270 140542309 -102122044 + (TG)n Simple_repeat Simple_repeat 1 39 0 249 239 0 0 chr1 140543005 140543051 -102121302 + polypyrimidine Low_complexity Low_complexity 1 46 0 236 293 40 13 chr1 140543921 140543996 -102120357 - MIR SINE MIR -87 121 45 279 133 0 0 chr1 140546211 140546256 -102118097 + (CACCAT)n Simple_repeat Simple_repeat 1 45 0 1063 65 0 0 chr1 140546349 140546488 -102117865 - L1PA4 LINE L1 -3 6152 6014 3776 180 18 16 chr1 140546498 140547319 -102117034 - L1MA4A LINE L1 -6 6297 5475 * 9685 198 31 14 chr1 140547303 140548905 -102115448 - L1PA13 LINE L1 -4 6810 5236 2329 114 0 0 chr1 140548905 140549213 -102115140 - AluY SINE Alu -3 308 1 9685 198 31 14 chr1 140549213 140549698 -102114655 - L1PA13 LINE L1 -1578 5236 4761 3239 201 25 86 chr1 140549698 140550672 -102113681 + LTR5 LTR ERVK 2 915 -54 9685 198 31 14 chr1 140550672 140551685 -102112668 - L1PA13 LINE L1 -2053 4761 3676 1239 143 0 0 chr1 140551700 140551882 -102112471 - AluY SINE Alu -37 274 93 10192 233 35 25 chr1 140551882 140555506 -102108847 - L1PA13 LINE L1 -3131 3666 1 1816 258 68 41 chr1 140555523 140556606 -102107747 - L1MDb LINE L1 -2384 4022 2910 450 154 48 0 chr1 140556612 140556716 -102107637 - L1MDb LINE L1 -3940 2468 2360 429 206 73 12 chr1 140556749 140556914 -102107439 - L1MDb LINE L1 -4105 2303 2129 1131 159 43 64 chr1 140556926 140557159 -102107194 + AluSg/x SINE Alu 83 310 0 489 243 7 0 chr1 140557196 140557340 -102107013 - L1MDb LINE L1 -4318 2090 1946 1380 7 0 7 chr1 140607375 140607530 -102056823 - L1PA2 LINE L1 -176 5979 5826 702 156 19 0 chr1 140608033 140608187 -102056166 + GA-rich Low_complexity Low_complexity 3 159 0 224 281 0 0 chr1 140608208 140608265 -102056088 + GA-rich Low_complexity Low_complexity 2 58 0 202 214 0 24 chr1 140609547 140609589 -102054764 + GA-rich Low_complexity Low_complexity 2 42 0 5818 252 71 36 chr1 140609737 140611899 -102052454 - L1MEc LINE L1 -4010 2386 150 327 237 112 53 chr1 140613889 140614058 -102050295 - L2 LINE L2 -34 3279 3101 7609 109 8 18 chr1 140614296 140615392 -102048961 - HSMAR1 DNA Mariner -202 1085 1 367 321 36 0 chr1 140615397 140615534 -102048819 - L2 LINE L2 -251 3062 2921 7888 30 0 2 chr1 140615751 140616773 -102047580 - L1P2 LINE L1 -687 5468 4450 345 255 111 38 chr1 140616760 140616995 -102047358 - L1MDb LINE L1 -4992 1417 1166 * 414 108 0 0 chr1 140617443 140617508 -102046845 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 208 343 48 34 chr1 140617520 140617666 -102046687 - MIR SINE MIR -28 234 87 285 140 0 0 chr1 140618874 140618931 -102045422 + (TG)n Simple_repeat Simple_repeat 2 58 0 1146 269 191 21 chr1 140619193 140619863 -102044490 + LTR50 LTR ERVL 8 791 -4 366 132 0 0 chr1 140622239 140622315 -102042038 + (TG)n Simple_repeat Simple_repeat 1 76 0 273 228 30 79 chr1 140622365 140622466 -102041887 + MIR SINE MIR 56 151 -111 31 76 0 0 chr1 140623095 140623161 -102041192 + AT_rich Low_complexity Low_complexity 1 66 0 236 250 15 15 chr1 140623330 140623398 -102040955 + MER91B DNA MER1_type 17 84 -106 200 227 45 0 chr1 140623791 140623835 -102040518 + G-rich Low_complexity Low_complexity 6 51 0 3874 266 223 41 chr1 140623851 140626042 -102038311 + L2 LINE L2 39 2843 -470 1833 115 42 7 chr1 140626042 140626329 -102038024 + L1MA5 LINE L1 6002 6298 -2 3874 266 223 41 chr1 140626329 140626906 -102037447 + L2 LINE L2 2843 3313 0 4808 107 58 116 chr1 140627788 140628997 -102035356 - Tigger3b DNA MER2_type -2 1230 91 511 269 137 6 chr1 140631460 140631642 -102032711 - MIR SINE MIR -44 218 13 407 256 31 39 chr1 140631904 140632033 -102032320 + MIR3 SINE MIR 1 128 -80 458 243 108 0 chr1 140632092 140632203 -102032150 + L2 LINE L2 3150 3272 0 1101 178 99 0 chr1 140632266 140632479 -102031874 - L1MB5 LINE L1 -9 6165 5932 425 119 0 0 chr1 140633058 140633117 -102031236 + AluS SINE Alu 2 60 -250 406 316 132 21 chr1 140633256 140633886 -102030467 - L1M4 LINE L1 -1112 5034 4335 339 164 0 0 chr1 140635497 140635558 -102028795 + (TA)n Simple_repeat Simple_repeat 2 62 0 1164 77 0 7 chr1 140635559 140635714 -102028639 + AluYa5 SINE Alu 158 311 0 213 222 0 0 chr1 140635718 140635763 -102028590 + (CA)n Simple_repeat Simple_repeat 2 46 0 911 222 24 27 chr1 140637040 140637333 -102027020 - L1M4 LINE L1 -1073 5884 5593 1307 255 112 20 chr1 140637336 140637972 -102026381 - L1M4 LINE L1 -4746 2213 1520 * 32417 53 6 1 chr1 140637969 140641963 -102022390 + L1P LINE L1 25 4035 -2111 501 295 17 26 chr1 140642076 140642283 -102022070 - ERVL-D LTR ERVL -5426 228 12 1763 188 5 62 chr1 140642316 140642458 -102021895 - MLT2D LTR ERVL -48 366 218 4628 95 40 3 chr1 140642458 140643082 -102021271 - L1PA13 LINE L1 -2 6161 5515 1763 188 5 62 chr1 140643082 140643327 -102021026 - MLT2D LTR ERVL -196 218 1 2163 119 3 13 chr1 140643372 140643684 -102020669 + AluSq SINE Alu 1 309 -4 532 228 9 9 chr1 140644054 140644168 -102020185 + ERVL LTR ERVL 804 917 -4847 1905 149 7 0 chr1 140644304 140644593 -102019760 + AluSx SINE Alu 1 291 -21 203 292 175 19 chr1 140645143 140645297 -102019056 - MIR SINE MIR -40 222 45 283 233 82 101 chr1 140645373 140645414 -102018939 + MER5A DNA MER1_type 34 74 -115 1953 135 0 23 chr1 140645414 140645744 -102018609 + AluSc SINE Alu 1 309 0 283 233 82 101 chr1 140645744 140645861 -102018492 + MER5A DNA MER1_type 74 189 0 234 352 44 38 chr1 140646001 140646160 -102018193 - L3 LINE CR1 -2 1575 1416 3465 226 16 26 chr1 140646160 140646208 -102018145 - L1M4 LINE L1 -5320 1539 1492 5767 34 0 0 chr1 140646208 140646848 -102017505 + L1PA4 LINE L1 5516 6155 0 3465 226 16 26 chr1 140646848 140647664 -102016689 - L1M4 LINE L1 -5367 1492 731 185 267 67 0 chr1 140648166 140648211 -102016142 - L2 LINE L2 -1 3312 3265 293 322 130 0 chr1 140648721 140648836 -102015517 - L2 LINE L2 -5 3267 3138 288 311 165 10 chr1 140650688 140650791 -102013562 - L2 LINE L2 -11 3261 3143 560 15 0 0 chr1 140651724 140651792 -102012561 + L1PA2 LINE L1 6088 6155 0 563 292 106 39 chr1 140654101 140655343 -102009010 - L1ME3 LINE L1 -202 5960 4614 22 0 0 0 chr1 140657150 140657172 -102007181 + AT_rich Low_complexity Low_complexity 1 22 0 2290 71 0 0 chr1 140658706 140659015 -102005338 - AluY SINE Alu 0 309 1 361 296 206 0 chr1 140660037 140660226 -102004127 - MIR SINE MIR -25 237 10 1567 121 0 21 chr1 140661315 140661555 -102002798 + L1PA12 LINE L1 5647 5881 -287 273 228 30 79 chr1 140661683 140661784 -102002569 - MIR SINE MIR -111 151 56 366 132 0 0 chr1 140661834 140661910 -102002443 + (CA)n Simple_repeat Simple_repeat 1 76 0 205 301 0 14 chr1 140664472 140664545 -101999808 + (CA)n Simple_repeat Simple_repeat 1 72 0 202 182 18 18 chr1 140664547 140664602 -101999751 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 531 319 48 4 chr1 140666035 140666264 -101998089 - MIR SINE MIR -19 243 5 213 121 0 0 chr1 140666275 140666308 -101998045 + (CA)n Simple_repeat Simple_repeat 2 34 0 2731 175 45 22 chr1 140667719 140668272 -101996081 + L1ME1 LINE L1 5266 5831 -481 * 3187 195 23 2 chr1 140668268 140668910 -101995443 - L1 LINE L1 -2265 3881 3226 * 3576 187 47 30 chr1 140668905 140669587 -101994766 + L1 LINE L1 3901 4631 -1515 605 95 0 0 chr1 140669587 140669671 -101994682 + MLT2A2 LTR ERVL 370 453 0 3576 187 47 30 chr1 140669671 140669894 -101994459 + L1 LINE L1 4631 4849 -1297 367 216 20 20 chr1 140669957 140670059 -101994294 + L1ME1 LINE L1 6061 6162 -4 222 208 0 0 chr1 140670104 140670157 -101994196 + (TA)n Simple_repeat Simple_repeat 2 54 0 252 324 0 0 chr1 140671449 140671551 -101992802 + L1ME1 LINE L1 6060 6161 -5 27 29 0 0 chr1 140676602 140676636 -101987717 + AT_rich Low_complexity Low_complexity 1 34 0 4492 205 9 51 chr1 140676727 140677873 -101986480 - L1MB2 LINE L1 -12 6395 5202 2129 107 0 4 chr1 140677873 140678177 -101986176 - AluSc SINE Alu 0 303 1 4492 205 9 51 chr1 140678177 140678364 -101985989 - L1MB2 LINE L1 -1205 5202 5009 765 189 0 39 chr1 140678364 140678491 -101985862 + FLAM_A SINE Alu 1 122 -11 4492 205 9 51 chr1 140678491 140678643 -101985710 - L1MB2 LINE L1 -1398 5009 4987 782 203 0 0 chr1 140678643 140678771 -101985582 - FLAM_A SINE Alu -3 130 3 4492 205 9 51 chr1 140678771 140678846 -101985507 - L1MB2 LINE L1 -1420 4987 4910 2710 305 171 11 chr1 140678849 140680117 -101984236 - L1MB2 LINE L1 -2334 4048 2578 1166 237 47 40 chr1 140680108 140680663 -101983690 - L1MB2 LINE L1 -4661 1652 779 * 23 33 0 0 chr1 140681330 140681360 -101982993 + AT_rich Low_complexity Low_complexity 1 30 0 252 324 0 0 chr1 140681938 140682040 -101982313 + L1ME1 LINE L1 6060 6161 -5 743 229 65 62 chr1 140684580 140684872 -101979481 + MER58B DNA MER1_type 3 295 -46 231 207 103 81 chr1 140685261 140685348 -101979005 - L2 LINE L2 -45 3268 3180 23 33 0 0 chr1 140685902 140685932 -101978421 + AT_rich Low_complexity Low_complexity 1 30 0 180 254 28 56 chr1 140686298 140686369 -101977984 - MIR SINE MIR -176 86 18 209 313 157 20 chr1 140686655 140686853 -101977500 + L2 LINE L2 3048 3272 0 15841 62 1 6 chr1 140693568 140695622 -101968731 + L1P LINE L1 3122 5164 -982 249 0 0 0 chr1 140695809 140695837 -101968516 - L1P3 LINE L1 -5471 990 963 * 33499 49 8 1 chr1 140695835 140699969 -101964384 + L1P LINE L1 694 4857 -1289 208 283 177 26 chr1 140701376 140701489 -101962864 + L2 LINE L2 3142 3271 -1 21 0 0 0 chr1 140701675 140701696 -101962657 + AT_rich Low_complexity Low_complexity 1 21 0 1797 197 85 79 chr1 140705104 140705621 -101958732 - MLT2B1 LTR ERVL 0 520 1 3349 269 78 25 chr1 140706066 140708642 -101955711 - L1ME3 LINE L1 -231 5939 2965 1736 190 48 23 chr1 140708642 140708995 -101955358 - MLT1A1 LTR MaLR 0 365 4 3349 269 78 25 chr1 140708995 140709165 -101955188 - L1ME3 LINE L1 -3205 2965 2805 2297 167 54 7 chr1 140709256 140709663 -101954690 - MSTB LTR MaLR 0 426 1 676 335 84 15 chr1 140709920 140710341 -101954012 - L2 LINE L2 -71 3242 2790 531 204 0 75 chr1 140710343 140710490 -101953863 - L1M4 LINE L1 -3131 3015 2880 891 191 80 22 chr1 140710490 140710715 -101953638 - MER33 DNA MER1_type -86 238 1 228 326 35 35 chr1 140710723 140710864 -101953489 + MER5B DNA MER1_type 1 141 -37 182 355 82 55 chr1 140710960 140711070 -101953283 + L2 LINE L2 3137 3249 -23 189 0 0 0 chr1 140711727 140711748 -101952605 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr1 140712919 140712941 -101951412 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr1 140714209 140714235 -101950118 + (TC)n Simple_repeat Simple_repeat 1 26 0 459 0 0 0 chr1 140714235 140714286 -101950067 + (TG)n Simple_repeat Simple_repeat 2 52 0 317 248 35 90 chr1 140714897 140715042 -101949311 - LTR33A LTR ERVL -7 516 380 361 282 70 21 chr1 140715497 140715639 -101948714 - L2 LINE L2 -5 3308 3160 1041 277 68 26 chr1 140715653 140716238 -101948115 - L2 LINE L2 0 3313 2710 381 278 26 9 chr1 140716235 140716350 -101948003 - MIR SINE MIR -106 156 40 * 283 297 36 27 chr1 140717066 140717177 -101947176 + MIR SINE MIR 14 125 -137 181 200 18 18 chr1 140717654 140717709 -101946644 - MIR3 SINE MIR 0 208 154 198 0 0 0 chr1 140717779 140717801 -101946552 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 683 132 193 0 chr1 140717804 140717918 -101946435 - FRAM SINE Alu -30 146 11 277 310 131 21 chr1 140718665 140718810 -101945543 - MIR3 SINE MIR -3 205 45 377 167 17 0 chr1 140719049 140719109 -101945244 + MIR SINE MIR 45 105 -157 4181 147 9 6 chr1 140719477 140720671 -101943682 + L1MA4A LINE L1 4713 5910 -393 2911 159 24 2 chr1 140720643 140721178 -101943175 + L1MA6 LINE L1 5473 6019 -281 * 801 265 55 13 chr1 140721458 140721696 -101942657 + MIR SINE MIR 2 249 -13 358 343 15 7 chr1 140721787 140721924 -101942429 + MIR SINE MIR 2 139 -123 284 289 81 34 chr1 140723425 140723574 -101940779 - MIR3 SINE MIR -23 185 30 1567 240 26 23 chr1 140726325 140726709 -101937644 + LTR31 LTR ERV1 117 501 -118 186 337 24 0 chr1 140728254 140728337 -101936016 + MIR3 SINE MIR 106 190 -18 2405 68 3 0 chr1 140728534 140728828 -101935525 - AluY SINE Alu -16 295 1 32 0 0 0 chr1 140729214 140729246 -101935107 + AT_rich Low_complexity Low_complexity 1 32 0 1681 61 0 0 chr1 140729253 140729451 -101934902 - L1PA5 LINE L1 -6 6148 5951 283 106 0 43 chr1 140729571 140729618 -101934735 - L2 LINE L2 -18 3295 3251 199 216 0 0 chr1 140729804 140729841 -101934512 + L2 LINE L2 3254 3290 -23 519 260 19 19 chr1 140730076 140730230 -101934123 + MIR3 SINE MIR 47 200 -8 186 320 173 0 chr1 140730726 140730801 -101933552 + L2 LINE L2 3185 3272 0 515 270 90 36 chr1 140730977 140731199 -101933154 + L2 LINE L2 3047 3280 -33 290 308 126 6 chr1 140731244 140731403 -101932950 - MIR SINE MIR -75 187 10 2038 118 4 0 chr1 140731597 140731909 -101932444 + AluSx SINE Alu 1 313 0 269 258 113 73 chr1 140732451 140732575 -101931778 - L2 LINE L2 -29 3243 3115 286 317 33 0 chr1 140732733 140732853 -101931500 - L1MEd LINE L1 -5470 649 526 490 333 25 20 chr1 140733669 140733873 -101930480 + MIR SINE MIR 2 206 -56 432 37 0 0 chr1 140734318 140734372 -101929981 + (TG)n Simple_repeat Simple_repeat 2 55 0 399 41 0 0 chr1 140734371 140734420 -101929933 + (TA)n Simple_repeat Simple_repeat 1 49 0 * 1858 180 40 67 chr1 140734762 140734961 -101929392 + MSTD LTR MaLR 3 187 -209 1605 186 50 7 chr1 140734961 140735241 -101929112 + AluJb SINE Alu 1 292 -20 1858 180 40 67 chr1 140735241 140735442 -101928911 + MSTD LTR MaLR 187 392 -4 387 255 59 10 chr1 140735486 140735588 -101928765 + MIR SINE MIR 26 132 -130 1760 185 0 0 chr1 140735607 140735883 -101928470 + AluJo SINE Alu 1 276 -36 246 62 0 0 chr1 140735893 140735925 -101928428 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 838 209 43 17 chr1 140736687 140736921 -101927432 - L1M4 LINE L1 -874 5272 5033 1747 121 96 3 chr1 140736931 140737213 -101927140 - Tigger1 DNA MER2_type 0 2418 2111 821 126 0 0 chr1 140737224 140737335 -101927018 - AluSg/x SINE Alu -11 299 189 12312 119 15 13 chr1 140737341 140739200 -101925153 - Tigger1 DNA MER2_type -332 2086 224 2112 248 74 18 chr1 140739333 140741383 -101922970 + L1ME3 LINE L1 3524 5939 -231 1797 197 85 79 chr1 140741832 140742349 -101922004 + MLT2B1 LTR ERVL 1 520 0 21 0 0 0 chr1 140745762 140745783 -101918570 + AT_rich Low_complexity Low_complexity 1 21 0 208 283 177 26 chr1 140745969 140746082 -101918271 - L2 LINE L2 -1 3271 3142 33535 49 8 1 chr1 140747489 140751624 -101912729 - L1P LINE L1 -1289 4857 694 249 0 0 0 chr1 140751622 140751650 -101912703 + L1P3 LINE L1 963 990 -5471 * 13779 99 1 5 chr1 140751837 140753796 -101910557 - L1PA8 LINE L1 -982 5164 3212 7049 78 10 0 chr1 140753796 140754786 -101909567 + L1PA8 LINE L1 5174 6172 0 621 230 16 0 chr1 140756761 140756887 -101907466 + MER63A DNA MER1_type 48 175 -35 697 202 0 10 chr1 140758258 140758409 -101905944 + L1MB7 LINE L1 5838 5982 -201 774 245 34 20 chr1 140758531 140758735 -101905618 + L1MB7 LINE L1 5968 6174 -10 198 342 43 34 chr1 140758986 140759103 -101905250 - L2 LINE L2 -8 3264 3147 251 217 14 29 chr1 140759310 140759379 -101904974 + (TATG)n Simple_repeat Simple_repeat 3 70 0 636 256 6 17 chr1 140760206 140760382 -101903971 + MER104 DNA Tc2 4 177 -3 1649 176 191 8 chr1 140761129 140761521 -101902832 + MLT2C2 LTR ERVL 1 464 0 342 0 0 0 chr1 140761593 140761631 -101902722 + (TG)n Simple_repeat Simple_repeat 2 39 0 618 275 22 6 chr1 140761682 140761864 -101902489 - MIR SINE MIR -1 261 77 363 367 18 39 chr1 140762950 140763179 -101901174 + MIR SINE MIR 17 240 -22 475 267 24 24 chr1 140764799 140764964 -101899389 + MLT1J LTR MaLR 340 504 -7 650 266 46 0 chr1 140767564 140767737 -101896616 + MER63A DNA MER1_type 11 191 -19 771 163 0 6 chr1 140769126 140769266 -101895087 + L1MB8 LINE L1 5838 5972 -206 975 196 24 19 chr1 140769398 140769607 -101894746 + L1MB8 LINE L1 5968 6177 -1 239 120 0 20 chr1 140770180 140770230 -101894123 + (TG)n Simple_repeat Simple_repeat 2 50 0 809 230 96 98 chr1 140770992 140771452 -101892901 - LTR37B LTR ERV1 0 468 10 615 249 17 17 chr1 140771943 140772120 -101892233 + MER104 DNA Tc2 4 180 0 1370 169 152 0 chr1 140772887 140773189 -101891164 + MLT2C2 LTR ERVL 1 348 -116 232 214 101 34 chr1 140773862 140773951 -101890402 + MLT2C2 LTR ERVL 370 464 0 680 280 11 0 chr1 140774085 140774271 -101890082 - MIR SINE MIR -1 261 74 357 24 0 0 chr1 140774369 140774411 -101889942 + (CA)n Simple_repeat Simple_repeat 1 42 0 512 339 9 39 chr1 140775355 140775588 -101888765 + MIR SINE MIR 15 240 -22 456 318 40 47 chr1 140777088 140777365 -101886988 + MLT1J LTR MaLR 237 511 0 3290 62 2 0 chr1 140777408 140777808 -101886545 + L1PA7 LINE L1 5754 6154 0 386 277 149 0 chr1 140780089 140780230 -101884123 + MER63A DNA MER1_type 11 172 -38 206 312 58 36 chr1 140781208 140781346 -101883007 + MIR SINE MIR 111 251 -11 734 160 7 6 chr1 140781627 140781766 -101882587 + L1MB8 LINE L1 5838 5972 -206 1068 187 19 19 chr1 140781898 140782107 -101882246 + L1MB8 LINE L1 5968 6176 -2 221 171 0 24 chr1 140782673 140782714 -101881639 + (TG)n Simple_repeat Simple_repeat 1 40 0 784 216 128 28 chr1 140783477 140783759 -101880594 - LTR37B LTR ERV1 -5 463 154 657 250 6 17 chr1 140784414 140784590 -101879763 + MER104 DNA Tc2 4 177 -3 1925 208 65 22 chr1 140785760 140786160 -101878193 + MER47B DNA MER2_type 2 418 0 244 347 0 0 chr1 140787672 140787744 -101876609 + L2 LINE L2 3184 3255 -17 385 294 8 34 chr1 140787751 140787870 -101876483 + L2 LINE L2 3188 3303 -10 189 175 0 0 chr1 140787924 140787964 -101876389 + GA-rich Low_complexity Low_complexity 4 43 0 833 154 41 0 chr1 140789078 140789201 -101875152 - FLAM_A SINE Alu -5 128 1 315 265 46 7 chr1 140789364 140789515 -101874838 - L1M4 LINE L1 -2155 3991 3835 575 223 9 59 chr1 140790112 140790354 -101873999 - MLT1H LTR MaLR -215 334 45 26 0 0 0 chr1 140790515 140790541 -101873812 + AT_rich Low_complexity Low_complexity 1 26 0 239 282 48 78 chr1 140790869 140790972 -101873381 + LTR16C LTR ERVL 72 171 -320 2482 221 66 50 chr1 140790977 140791932 -101872421 - L1MDa LINE L1 -4561 1979 1010 401 291 57 34 chr1 140792856 140793031 -101871322 - HAL1b LINE L1 -1121 227 49 367 361 49 31 chr1 140793873 140794200 -101870153 + L1M4 LINE L1 3236 3568 -2578 226 276 69 0 chr1 140795900 140795958 -101868395 + L2 LINE L2 3147 3208 -64 188 337 33 0 chr1 140796170 140796262 -101868091 + L2 LINE L2 3200 3294 -19 209 239 174 11 chr1 140796603 140796695 -101867658 - MIR SINE MIR -64 144 38 26 0 0 0 chr1 140797028 140797054 -101867299 + AT_rich Low_complexity Low_complexity 1 26 0 582 28 0 0 chr1 140798590 140798662 -101865691 + (TG)n Simple_repeat Simple_repeat 1 72 0 15132 136 30 16 chr1 140798834 140800266 -101864087 + Tigger1 DNA MER2_type 2 1484 -934 2356 91 10 0 chr1 140800266 140800574 -101863779 - AluY SINE Alu 0 311 1 15132 136 30 16 chr1 140800574 140801523 -101862830 + Tigger1 DNA MER2_type 1484 2418 0 727 218 173 1 chr1 140801711 140801907 -101862446 + MIR SINE MIR 1 225 -37 27 0 0 0 chr1 140802740 140802767 -101861586 + AT_rich Low_complexity Low_complexity 1 27 0 215 245 0 0 chr1 140803219 140803272 -101861081 - L2 LINE L2 0 3313 3261 1603 214 25 57 chr1 140803281 140803340 -101861013 - MSTD LTR MaLR -2 394 335 1640 144 0 4 chr1 140803340 140803590 -101860763 + L1PA15 LINE L1 5915 6163 -2 1603 214 25 57 chr1 140803590 140803937 -101860416 - MSTD LTR MaLR -61 335 1 2040 255 47 19 chr1 140804262 140804854 -101859499 + L1ME3A LINE L1 5558 6166 -4 832 200 44 0 chr1 140804987 140805167 -101859186 + MER53 DNA DNA 2 189 0 247 296 62 26 chr1 140805444 140805785 -101858568 - L1M4c LINE L1 -5009 1375 1023 1829 148 0 43 chr1 140806147 140806452 -101857901 - AluSx SINE Alu -20 292 1 4519 142 19 22 chr1 140806892 140807541 -101856812 - L1MA3 LINE L1 -340 7384 6735 2043 151 3 0 chr1 140807541 140807852 -101856501 + AluSx SINE Alu 1 312 0 4519 142 19 22 chr1 140807852 140808454 -101855899 - L1MA3 LINE L1 -989 6735 5823 6062 148 14 2 chr1 140808454 140810003 -101854350 - L1PA13 LINE L1 0 6163 4598 3189 187 10 35 chr1 140810004 140810711 -101853642 - L1PA13 LINE L1 -2385 3761 3073 808 162 7 0 chr1 140810716 140810864 -101853489 - L1MA3 LINE L1 -1437 6128 5980 * 15738 162 10 19 chr1 140810861 140813478 -101850875 - L1MA3 LINE L1 -4962 2603 11 330 194 0 0 chr1 140814689 140814761 -101849592 + GA-rich Low_complexity Low_complexity 3 74 0 265 225 22 0 chr1 140815239 140815328 -101849025 + GA-rich Low_complexity Low_complexity 4 94 0 1735 101 9 0 chr1 140817345 140817572 -101846781 - AluSg/x SINE Alu -18 294 66 190 280 112 24 chr1 140818515 140818640 -101845713 + L2 LINE L2 3136 3271 -1 413 51 34 0 chr1 140820599 140820658 -101843695 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 1372 98 47 5 chr1 140821963 140822156 -101842197 - AluSc SINE Alu -23 286 86 1646 238 46 70 chr1 140822421 140822968 -101841385 + MLT1H1 LTR MaLR 10 543 -12 213 361 83 0 chr1 140823206 140823278 -101841075 + L2 LINE L2 3196 3273 -40 2035 77 12 187 chr1 140823297 140823714 -101840639 + LTR14A LTR ERVK 1 344 0 9487 38 26 0 chr1 140824972 140826896 -101837457 - L1PA4 LINE L1 -2 6153 4183 226 288 151 14 chr1 140827894 140828040 -101836313 - MIR SINE MIR -18 244 79 2226 117 0 0 chr1 140828173 140828472 -101835881 - AluSg SINE Alu -7 303 5 21 57 0 0 chr1 140828632 140828667 -101835686 + AT_rich Low_complexity Low_complexity 1 35 0 312 266 87 41 chr1 140832764 140832935 -101831418 - MIR SINE MIR -66 142 15 277 314 149 16 chr1 140833007 140833255 -101831098 + L2 LINE L2 3031 3311 -2 414 169 42 42 chr1 140834525 140834643 -101829710 + MIR SINE MIR 77 194 -68 2218 225 122 61 chr1 140834706 140835413 -101828940 - MER21B LTR ERV1 -113 750 1 201 346 150 33 chr1 140836117 140836270 -101828083 + L2 LINE L2 3058 3228 -44 6030 108 13 3 chr1 140837934 140838878 -101825475 - L1PB1 LINE L1 -13 6138 5186 201 151 38 38 chr1 140838891 140838944 -101825409 - MIR SINE MIR -45 217 165 358 273 136 7 chr1 140839194 140839336 -101825017 + Charlie8 DNA MER1_type 78 239 -2178 419 102 0 0 chr1 140839336 140839395 -101824958 + MSTB1 LTR MaLR 1 59 -373 210 240 20 0 chr1 140839436 140839486 -101824867 + CT-rich Low_complexity Low_complexity 1 51 0 277 267 61 76 chr1 140839486 140839617 -101824736 - MIR SINE MIR -116 146 18 1035 172 9 42 chr1 140839827 140840042 -101824311 - MSTB1 LTR MaLR 0 432 225 234 275 0 0 chr1 140840163 140840243 -101824110 + (TA)n Simple_repeat Simple_repeat 1 80 0 4275 179 45 14 chr1 140840243 140841418 -101822935 - L1MB8 LINE L1 -5 6173 4965 528 93 0 0 chr1 140841586 140841661 -101822692 + (TC)n Simple_repeat Simple_repeat 2 76 0 29 0 0 0 chr1 140841820 140841849 -101822504 + AT_rich Low_complexity Low_complexity 1 29 0 2177 103 4 4 chr1 140841988 140842269 -101822084 - AluSp SINE Alu -16 297 17 1647 201 0 19 chr1 140843309 140843627 -101820726 - AluJo SINE Alu 0 312 1 346 320 51 13 chr1 140844240 140844396 -101819957 + MIR SINE MIR 39 200 -62 273 325 51 68 chr1 140845351 140845867 -101818486 - L2 LINE L2 -220 3052 2549 1575 130 12 12 chr1 140846088 140846334 -101818019 - MSTB1 LTR MaLR -186 246 1 387 264 136 7 chr1 140846334 140846476 -101817877 - Charlie8 DNA MER1_type -2178 239 78 2182 38 4 0 chr1 140846782 140847045 -101817308 - L1PA4 LINE L1 -4 6151 5888 3877 173 22 24 chr1 140851715 140852474 -101811879 - L1MB3 LINE L1 -3 6180 5423 2334 105 0 7 chr1 140852800 140853104 -101811249 + AluSx SINE Alu 1 302 -10 799 227 22 16 chr1 140853732 140853917 -101810436 + MER5A DNA MER1_type 4 189 0 215 266 0 16 chr1 140853945 140854009 -101810344 + (TA)n Simple_repeat Simple_repeat 2 64 0 222 313 30 0 chr1 140854017 140854116 -101810237 - MIR SINE MIR -71 191 90 222 211 18 0 chr1 140854901 140854958 -101809395 + (TCTG)n Simple_repeat Simple_repeat 1 58 0 359 272 0 0 chr1 140856596 140856688 -101807665 - L2 LINE L2 0 3313 3222 331 345 126 15 chr1 140856979 140857304 -101807049 + L3 LINE CR1 608 968 -609 394 284 105 32 chr1 140857428 140857618 -101806735 - MIR SINE MIR -27 235 32 360 258 39 93 chr1 140857835 140858017 -101806336 - L2 LINE L2 0 3313 3142 376 326 40 0 chr1 140858161 140858347 -101806006 + MIR SINE MIR 16 206 -56 632 204 81 91 chr1 140858747 140858968 -101805385 - MER20 DNA MER1_type 0 219 1 295 229 36 36 chr1 140859813 140859896 -101804457 - MER46C DNA MER2_type -8 330 248 2724 80 13 42 chr1 140860315 140860701 -101803652 - THE1C LTR MaLR 0 375 1 290 265 26 10 chr1 140861213 140861311 -101803042 - L1MEc LINE L1 -4865 1712 1573 7629 31 0 13 chr1 140861340 140862485 -101801868 - L1PA4 LINE L1 0 6155 5014 350 325 75 16 chr1 140863272 140863460 -101800893 + MIR3 SINE MIR 3 201 -7 1172 266 191 21 chr1 140864732 140865402 -101798951 - LTR50 LTR ERVL -4 791 8 285 140 0 0 chr1 140865664 140865721 -101798632 + (CA)n Simple_repeat Simple_repeat 2 58 0 801 299 63 28 chr1 140866543 140866861 -101797492 - MER93a LTR ERV1 0 402 74 417 217 105 0 chr1 140867248 140867391 -101796962 - MIR SINE MIR -3 259 102 23 0 0 0 chr1 140868091 140868114 -101796239 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 140868253 140868276 -101796077 + AT_rich Low_complexity Low_complexity 1 23 0 21 89 0 0 chr1 140868392 140868448 -101795905 + AT_rich Low_complexity Low_complexity 1 56 0 256 254 21 156 chr1 140868672 140869056 -101795297 - L1ME LINE L1 -399 5722 5428 1999 117 53 3 chr1 140869056 140869339 -101795014 - AluSg SINE Alu -13 297 1 256 254 21 156 chr1 140869339 140869486 -101794867 - L1ME LINE L1 -693 5428 5263 1200 193 149 4 chr1 140870583 140870832 -101793521 + AluJb SINE Alu 5 289 -13 474 254 15 15 chr1 140870968 140871102 -101793251 + MER94 DNA DNA 1 134 0 284 298 60 85 chr1 140872080 140872328 -101792025 - MIR SINE MIR -11 251 10 850 235 53 56 chr1 140872336 140872676 -101791677 - MER58B DNA MER1_type 0 341 3 12956 224 55 23 chr1 140925833 140927111 -101737242 - L1MA8 LINE L1 -375 7335 6099 2559 39 0 7 chr1 140927111 140927416 -101736937 + AluY SINE Alu 1 303 -8 12956 224 55 23 chr1 140927416 140931113 -101733240 - L1MA8 LINE L1 -1611 6099 2268 349 165 148 17 chr1 140931378 140931493 -101732860 - L1 LINE L1 -1718 4428 4299 * 4829 168 34 12 chr1 140931488 140932647 -101731706 + L1MA8 LINE L1 4996 6173 -118 584 245 88 13 chr1 140935374 140935533 -101728820 - MER5B DNA MER1_type 0 178 8 228 227 0 53 chr1 140936054 140936129 -101728224 + CT-rich Low_complexity Low_complexity 5 75 0 182 406 65 16 chr1 140936168 140936291 -101728062 - L2 LINE L2 -37 3235 3107 6142 126 3 9 chr1 140937170 140938541 -101725812 + L1PA13 LINE L1 4788 6161 -2 314 314 51 8 chr1 140939014 140939132 -101725221 + L2 LINE L2 3188 3310 -3 2290 71 0 0 chr1 140939740 140940049 -101724304 - AluY SINE Alu 0 309 1 361 296 206 0 chr1 140941071 140941260 -101723093 - MIR SINE MIR -25 237 10 231 207 103 81 chr1 140942250 140942337 -101722016 - L2 LINE L2 -45 3268 3180 23 33 0 0 chr1 140942891 140942921 -101721432 + AT_rich Low_complexity Low_complexity 1 30 0 180 254 28 56 chr1 140943287 140943358 -101720995 - MIR SINE MIR -176 86 18 186 313 157 20 chr1 140943644 140943842 -101720511 + L2 LINE L2 3048 3272 0 398 270 44 51 chr1 140945217 140945354 -101718999 + L2 LINE L2 3178 3313 0 2000 134 20 3 chr1 140945954 140946253 -101718100 - AluSx SINE Alu -8 304 1 8095 214 27 7 chr1 140947256 140949316 -101715037 + L1PA16 LINE L1 3577 5699 -467 186 43 0 0 chr1 140949316 140949339 -101715014 + (TAA)n Simple_repeat Simple_repeat 2 24 0 8095 214 27 7 chr1 140949339 140949808 -101714545 + L1PA16 LINE L1 5699 6157 -9 470 155 21 0 chr1 140949830 140949927 -101714426 - L1 LINE L1 -1520 4626 4528 512 182 36 16 chr1 140949932 140950123 -101714230 - L1MA7 LINE L1 -2 6289 6028 657 75 0 0 chr1 140952436 140952529 -101711824 + L1P LINE L1 3122 3214 -2932 309 317 104 38 chr1 140952760 140952943 -101711410 + L1MEc LINE L1 1613 1807 -4589 2162 237 103 47 chr1 140953045 140954526 -101709827 + L1MEc LINE L1 1919 3678 -2537 7741 20 3 0 chr1 140954536 140955557 -101708796 + L1PA3 LINE L1 5141 6164 0 448 265 82 27 chr1 140955607 140955754 -101708599 - ERVL-C1 LTR ERVL -5608 156 2 336 167 0 0 chr1 140955798 140955894 -101708459 + (TG)n Simple_repeat Simple_repeat 2 97 0 294 179 0 90 chr1 140955919 140955997 -101708356 - MLT2C1 LTR ERVL -48 349 279 * 572 180 0 0 chr1 140955991 140956091 -101708262 - MLT2C1 LTR ERVL -250 147 48 253 258 32 48 chr1 140956105 140956229 -101708124 + L1MEc LINE L1 3865 3986 -2229 1130 254 57 14 chr1 140956233 140956721 -101707632 + L1MEc LINE L1 4230 4738 -1477 1732 80 96 90 chr1 140956722 140956838 -101707515 + AluSq SINE Alu 1 115 -198 2139 77 7 7 chr1 140956838 140957125 -101707228 + AluSg SINE Alu 1 287 -23 1732 80 96 90 chr1 140957125 140957309 -101707044 + AluSq SINE Alu 115 303 -10 424 194 53 131 chr1 140957465 140957671 -101706682 + L1MEc LINE L1 5062 5251 -964 2562 52 0 3 chr1 140958041 140958348 -101706005 + AluY SINE Alu 3 308 -3 184 211 77 19 chr1 140958615 140958667 -101705686 - L2 LINE L2 0 3272 3218 191 335 222 5 chr1 140959608 140959793 -101704560 + MIR SINE MIR 21 245 -17 1090 295 56 30 chr1 140959805 140960270 -101704083 + L2 LINE L2 2837 3313 0 347 279 98 8 chr1 140960702 140960824 -101703529 + MIR SINE MIR 32 164 -98 349 141 56 0 chr1 140961452 140961523 -101702830 + MER116 DNA Mariner 1 75 -5 302 362 14 0 chr1 140961909 140962047 -101702306 + MIR SINE MIR 103 242 -20 199 205 0 0 chr1 140962013 140962052 -101702301 + L2 LINE L2 3213 3251 -21 * 275 241 25 25 chr1 140962824 140962903 -101701450 + L1MEc LINE L1 22 100 -6296 1271 178 18 1 chr1 140962921 140963220 -101701133 - MER2 DNA MER2_type -1 344 2 2419 247 46 40 chr1 140963230 140963468 -101700885 + L1MEc LINE L1 122 357 -6039 5924 136 18 22 chr1 140963468 140964441 -101699912 + LTR5 LTR ERVK 1 969 0 2419 247 46 40 chr1 140964441 140964943 -101699410 + L1MEc LINE L1 357 866 -5530 * 5649 159 53 18 chr1 140964939 140966306 -101698047 + L1PA15 LINE L1 4125 5532 -633 3627 119 11 0 chr1 140966310 140966830 -101697523 + L1PA15 LINE L1 5639 6164 -1 257 171 0 105 chr1 140966832 140966908 -101697445 + L1MEc LINE L1 855 922 -5474 704 207 41 0 chr1 140966908 140967029 -101697324 + FLAM_C SINE Alu 2 127 -16 2354 277 46 21 chr1 140967034 140967950 -101696403 + L1MEc LINE L1 914 1852 -4544 275 247 27 0 chr1 140968368 140968441 -101695912 + MIR3 SINE MIR 126 200 -8 625 237 5 34 chr1 140968607 140968811 -101695542 - MIR SINE MIR -29 233 39 2405 175 8 0 chr1 140970222 140970622 -101693731 - MER57A LTR ERV1 0 403 1 548 277 43 38 chr1 140970922 140971157 -101693196 + L2 LINE L2 3077 3312 -1 594 306 187 27 chr1 140971401 140972160 -101692193 + L2 LINE L2 2419 3313 0 348 290 0 0 chr1 140972191 140972298 -101692055 + (CA)n Simple_repeat Simple_repeat 2 108 0 242 335 102 69 chr1 140972426 140972760 -101691593 + L2 LINE L2 2910 3254 -18 296 270 11 22 chr1 140973784 140973873 -101690480 - L2 LINE L2 -5 3308 3221 239 280 100 0 chr1 140973860 140973960 -101690393 + MIR SINE MIR 96 205 -57 * 398 245 31 0 chr1 140974269 140974367 -101689986 + L1ME4a LINE L1 5793 5893 -228 331 281 18 9 chr1 140974897 140975011 -101689342 + (TCCA)n Simple_repeat Simple_repeat 2 116 0 221 318 98 53 chr1 140975659 140975904 -101688449 - L2 LINE L2 -10 3262 3007 182 300 50 40 chr1 140976206 140976306 -101688047 + L2 LINE L2 2996 3096 -176 211 258 38 14 chr1 140978116 140978216 -101686137 + MIR SINE MIR 53 118 -90 219 341 76 23 chr1 140978928 140979157 -101685196 + L2 LINE L2 1634 1884 -1430 4725 137 14 37 chr1 140979157 140979959 -101684394 - LTR39 LTR ERV1 0 783 1 219 341 76 23 chr1 140979959 140980031 -101684322 + L2 LINE L2 1884 1951 -1363 468 290 66 65 chr1 140980244 140980771 -101683582 + L2 LINE L2 2335 2862 -452 811 257 29 0 chr1 140982367 140982573 -101681780 + MIR SINE MIR 13 224 -38 486 303 7 0 chr1 140982547 140982689 -101681664 - MIR SINE MIR -13 249 107 * 4474 140 27 22 chr1 140982857 140983638 -101680715 + L1MA4A LINE L1 5338 6122 -181 * 33066 31 1 0 chr1 140983637 140988335 -101676018 + L1PA3 LINE L1 1454 6155 0 261 83 0 0 chr1 140989491 140989527 -101674826 + (TG)n Simple_repeat Simple_repeat 2 37 0 1500 126 0 0 chr1 140990528 140990758 -101673595 - L1MA5 LINE L1 0 6300 6071 1133 121 154 12 chr1 140990760 140991021 -101673332 + MER1B DNA MER1_type 31 323 -16 449 190 30 30 chr1 140991034 140991134 -101673219 - L1MA5 LINE L1 -218 6082 5983 2342 102 0 0 chr1 140991448 140991743 -101672610 + AluSx SINE Alu 1 295 -17 383 282 106 0 chr1 140991816 140991958 -101672395 + L1MEd LINE L1 2 158 -5961 1885 200 131 16 chr1 140991993 140992442 -101671911 + MLT1D LTR MaLR 5 505 0 475 286 75 24 chr1 140992524 140992856 -101671497 + HAL1b LINE L1 502 850 -498 226 304 112 39 chr1 140993387 140993772 -101670581 + L1MEd LINE L1 2283 2695 -3434 1856 160 0 17 chr1 140993825 140994113 -101670240 + AluJo SINE Alu 3 285 -27 26 50 0 0 chr1 140994113 140994153 -101670200 + AT_rich Low_complexity Low_complexity 1 40 0 3612 96 0 4 chr1 140994766 140995243 -101669110 + HERVK9 LTR ERVK 718 1192 -4724 5501 105 1 1 chr1 140995350 140996090 -101668263 + HERVK9 LTR ERVK 4895 5634 -282 2320 91 3 10 chr1 140996155 140996464 -101667889 + HERVK9 LTR ERVK 5610 5916 0 3601 116 4 4 chr1 140996466 140996975 -101667378 + MER9 LTR ERVK 3 511 0 212 250 42 0 chr1 140997572 140997644 -101666709 - MIR SINE MIR -74 188 114 519 170 0 0 chr1 141000118 141000218 -101664135 + (TG)n Simple_repeat Simple_repeat 1 100 0 627 234 90 27 chr1 141000609 141000831 -101663522 + MIR SINE MIR 8 243 -19 186 43 0 0 chr1 141000833 141000856 -101663497 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 2551 158 7 18 chr1 141001279 141001729 -101662624 - MER65A LTR ERV1 0 445 1 480 170 50 92 chr1 141001954 141002095 -101662258 + MIR SINE MIR 29 163 -99 228 286 110 39 chr1 141002814 141002984 -101661369 + MIR SINE MIR 2 192 -63 195 100 0 0 chr1 141002999 141003029 -101661324 + (AAATG)n Simple_repeat Simple_repeat 1 30 0 327 360 0 9 chr1 141003075 141003189 -101661164 + L2 LINE L2 3150 3262 -10 446 250 50 77 chr1 141003320 141003540 -101660813 - MARNA DNA Mariner -330 256 43 2376 101 3 0 chr1 141003550 141003856 -101660497 + AluSg SINE Alu 1 307 -3 210 132 38 94 chr1 141005670 141005723 -101658630 + MIR SINE MIR 103 152 -110 600 246 41 49 chr1 141005801 141006045 -101658308 - MIR SINE MIR -1 261 20 29456 43 1 2 chr1 141009456 141013828 -101650525 + L1PA4 LINE L1 1787 6155 0 3882 218 60 9 chr1 141013831 141014754 -101649599 - L1PBb LINE L1 -4741 2843 1781 360 254 120 69 chr1 141014974 141015191 -101649162 - L1PBb LINE L1 -5788 1797 1570 267 299 63 24 chr1 141015306 141015433 -101648920 - L1PBb LINE L1 -6032 1553 1422 901 101 215 0 chr1 141015444 141015602 -101648751 + L1PA15-16 LINE L1 2353 2544 -4305 1042 302 65 5 chr1 141015933 141016304 -101648049 - L1PBb LINE L1 -7178 403 11 732 200 0 15 chr1 141016387 141016522 -101647831 - FLAM_C SINE Alu 0 133 1 276 149 0 0 chr1 141016564 141016611 -101647742 + (TG)n Simple_repeat Simple_repeat 2 48 0 3880 177 31 45 chr1 141017506 141018302 -101646051 - LTR1 LTR ERV1 0 785 1 1774 249 86 22 chr1 141022534 141023072 -101641281 + MER90 LTR ERV1 1 572 -3 554 237 174 13 chr1 141024478 141024702 -101639651 - MIR SINE MIR -1 261 2 367 312 118 35 chr1 141025096 141025266 -101639087 - MER91A DNA MER1_type 0 196 13 194 61 0 30 chr1 141026185 141026206 -101638147 + (TTTG)n Simple_repeat Simple_repeat 2 23 -10 2238 209 20 71 chr1 141026206 141026851 -101637502 - LTR9 LTR ERV1 0 612 1 194 61 0 30 chr1 141026851 141026862 -101637491 + (TTTG)n Simple_repeat Simple_repeat 23 33 0 182 61 0 30 chr1 141027068 141027101 -101637252 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2420 72 20 0 chr1 141027356 141027662 -101636691 - AluSq SINE Alu -1 312 1 1056 275 102 84 chr1 141028240 141029421 -101634932 + L1MC5 LINE L1 5976 7233 -728 851 246 30 65 chr1 141029579 141029880 -101634473 + L1MC5 LINE L1 7293 7578 -383 2727 64 6 0 chr1 141029880 141030222 -101634131 + LTR14A LTR ERVK 1 344 0 851 246 30 65 chr1 141030222 141030319 -101634034 + L1MC5 LINE L1 7578 7677 -284 16708 167 28 2 chr1 141030319 141034346 -101630007 + L1PA13 LINE L1 2735 6866 0 338 276 53 53 chr1 141034377 141034642 -101629711 + L1MC5 LINE L1 7696 7960 -1 272 210 174 97 chr1 141034950 141035145 -101629208 + L2 LINE L2 3104 3313 0 190 331 120 49 chr1 141035725 141035867 -101628486 + L3 LINE CR1 1403 1554 -23 914 297 120 58 chr1 141036478 141037240 -101627113 + L1MEc LINE L1 12 840 -5279 1104 172 11 0 chr1 141037240 141037426 -101626927 + L1MC1 LINE L1 6145 6332 -1 914 297 120 58 chr1 141037426 141037561 -101626792 + L1MEc LINE L1 840 965 -5154 686 311 85 52 chr1 141037562 141038044 -101626309 - MLT1J LTR MaLR -1 510 13 360 273 8 45 chr1 141038143 141038275 -101626078 + L1MEc LINE L1 1097 1223 -4896 446 294 68 26 chr1 141038287 141038646 -101625707 + L1MEc LINE L1 1409 1731 -863 355 259 9 19 chr1 141041130 141041238 -101623115 - L2 LINE L2 0 3313 3207 209 323 85 11 chr1 141041400 141041589 -101622764 + L2 LINE L2 2327 2529 -785 354 330 65 11 chr1 141042034 141042219 -101622134 + MIR SINE MIR 5 199 -63 370 294 118 26 chr1 141042425 141042697 -101621656 + L2 LINE L2 3017 3313 0 261 333 164 0 chr1 141043213 141043378 -101620975 + MIR SINE MIR 71 262 0 231 231 187 0 chr1 141044109 141044200 -101620153 - L3 LINE CR1 -5 1572 1465 441 281 44 88 chr1 141044420 141044694 -101619659 + MIR SINE MIR 1 262 0 236 196 0 0 chr1 141045065 141045116 -101619237 + A-rich Low_complexity Low_complexity 1 51 0 317 265 147 15 chr1 141045279 141045415 -101618938 + MIR SINE MIR 65 218 -44 238 197 66 0 chr1 141045651 141045712 -101618641 - L2 LINE L2 -10 3262 3198 23 33 0 0 chr1 141046125 141046155 -101618198 + GC_rich Low_complexity Low_complexity 1 30 0 343 266 40 32 chr1 141046814 141046938 -101617415 + MIR3 SINE MIR 35 159 -49 387 0 0 0 chr1 141047431 141047474 -101616879 + (CA)n Simple_repeat Simple_repeat 2 44 0 236 224 15 0 chr1 141047954 141048021 -101616332 + GA-rich Low_complexity Low_complexity 2 69 0 333 0 0 0 chr1 141048771 141048808 -101615545 + (CA)n Simple_repeat Simple_repeat 1 37 0 1813 109 98 0 chr1 141050186 141050468 -101613885 - AluSg SINE Alu 0 307 1 200 315 22 11 chr1 141051921 141052013 -101612340 + MIR SINE MIR 23 115 -147 290 227 133 91 chr1 141052277 141052607 -101611746 - L1ME4a LINE L1 -10 6111 5768 2338 78 0 26 chr1 141052627 141052934 -101611419 - AluY SINE Alu -12 299 1 789 261 64 5 chr1 141052936 141053154 -101611199 + MIR SINE MIR 22 252 -10 330 318 0 9 chr1 141053746 141053856 -101610497 - MIR3 SINE MIR -48 160 52 2637 183 24 20 chr1 141054704 141055195 -101609158 + MLT1D LTR MaLR 10 502 -3 555 217 136 30 chr1 141055296 141055494 -101608859 + MIR SINE MIR 44 262 0 329 339 12 24 chr1 141055791 141055956 -101608397 - MIR SINE MIR -77 185 23 241 145 32 0 chr1 141057116 141057178 -101607175 + (TA)n Simple_repeat Simple_repeat 1 64 0 278 255 57 90 chr1 141057181 141057393 -101606960 + L1ME4a LINE L1 5899 6103 -18 227 247 0 12 chr1 141058225 141058310 -101606043 + GA-rich Low_complexity Low_complexity 1 84 0 234 227 133 27 chr1 141059620 141059695 -101604658 + L2 LINE L2 3190 3272 0 231 292 15 0 chr1 141060495 141060560 -101603793 + L2 LINE L2 3233 3298 -15 256 159 16 16 chr1 141060567 141060630 -101603723 + GA-rich Low_complexity Low_complexity 3 65 0 432 298 30 8 chr1 141061127 141061258 -101603095 + MIR3 SINE MIR 14 147 -61 204 200 36 0 chr1 141061324 141061379 -101602974 + (TAA)n Simple_repeat Simple_repeat 2 58 0 211 309 46 72 chr1 141062054 141062206 -101602147 - L2 LINE L2 -2 3270 3123 422 287 0 0 chr1 141062361 141062462 -101601891 + MIR SINE MIR 56 156 -106 222 372 35 0 chr1 141062507 141062593 -101601760 - L2 LINE L2 -50 3222 3134 197 280 56 56 chr1 141063721 141063828 -101600525 - MIR SINE MIR -72 136 30 373 287 48 36 chr1 141064169 141064336 -101600017 + MIR SINE MIR 84 252 -10 2105 109 17 7 chr1 141064452 141064745 -101599608 - AluSc SINE Alu -13 296 1 325 277 97 32 chr1 141065105 141065160 -101599193 + MIR SINE MIR 13 63 -199 2352 76 0 25 chr1 141065160 141065477 -101598876 - AluY SINE Alu -2 309 1 2055 136 0 10 chr1 141065479 141065780 -101598573 - AluJb SINE Alu -14 298 1 325 277 97 32 chr1 141065780 141065876 -101598477 + MIR SINE MIR 63 177 -85 333 0 0 0 chr1 141065878 141065915 -101598438 + (TG)n Simple_repeat Simple_repeat 1 37 0 31 58 0 0 chr1 141065973 141066025 -101598328 + AT_rich Low_complexity Low_complexity 1 52 0 2132 162 40 3 chr1 141066525 141066901 -101597452 - MLT1B LTR MaLR 0 390 1 2246 121 0 6 chr1 141067252 141067565 -101596788 + AluSx SINE Alu 1 311 -1 428 138 0 0 chr1 141067980 141068045 -101596308 - L1PA16 LINE L1 -96 6070 6006 * 785 175 28 0 chr1 141068035 141068178 -101596175 + L1PA16 LINE L1 5863 6009 -157 910 137 13 7 chr1 141069328 141069481 -101594872 - L1PA16 LINE L1 -150 6016 5863 868 129 29 0 chr1 141069481 141069618 -101594735 + L1PA16 LINE L1 6013 6156 -10 775 184 180 59 chr1 141069657 141069896 -101594457 + L1M4 LINE L1 48 315 -6227 9092 16 0 0 chr1 141069912 141071723 -101592630 + L1HS LINE L1 4345 6155 0 4252 82 2 0 chr1 141071726 141072309 -101592044 + L1P LINE L1 4285 4868 -1278 4980 221 35 32 chr1 141072309 141072702 -101591651 + L1 LINE L1 1890 2280 -3866 189 0 0 0 chr1 141072702 141072723 -101591630 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4980 221 35 32 chr1 141072723 141072962 -101591391 + L1 LINE L1 2280 2517 -3629 2321 86 7 0 chr1 141072962 141073254 -101591099 - AluSp SINE Alu -19 294 1 4980 221 35 32 chr1 141073254 141074301 -101590052 + L1 LINE L1 2517 3503 -2643 360 284 90 7 chr1 141075915 141076070 -101588283 + Harlequin LTR ERV1 187 354 -6295 558 298 18 23 chr1 141076322 141076540 -101587813 + Harlequin LTR ERV1 790 1006 -6779 326 321 65 32 chr1 141076744 141077021 -101587332 + Harlequin LTR ERV1 966 1251 -5398 347 367 6 6 chr1 141077023 141077203 -101587150 + GA-rich Low_complexity Low_complexity 1 180 0 204 243 30 71 chr1 141077147 141077316 -101587037 + (CAGAGA)n Simple_repeat Simple_repeat 5 166 0 * 364 370 12 0 chr1 141077316 141077489 -101586864 + Harlequin LTR ERV1 3927 4101 -3684 198 0 0 0 chr1 141077496 141077518 -101586835 + (TAA)n Simple_repeat Simple_repeat 1 22 0 1954 335 40 40 chr1 141077627 141079259 -101585094 + Harlequin LTR ERV1 4124 5756 -2029 278 222 0 0 chr1 141080035 141080089 -101584264 + Harlequin LTR ERV1 3386 3439 -3457 492 81 0 0 chr1 141081420 141081494 -101582859 + (TCCCC)n Simple_repeat Simple_repeat 4 77 0 245 200 0 36 chr1 141081495 141081550 -101582803 + CT-rich Low_complexity Low_complexity 4 56 0 302 200 15 15 chr1 141081563 141081628 -101582725 - L2 LINE L2 -9 3304 3240 2738 120 5 3 chr1 141083361 141083735 -101580618 + THE1C LTR MaLR 1 375 0 343 131 16 33 chr1 141083735 141083796 -101580557 + THE1C-int LTR MaLR 1 60 -1520 1531 187 46 7 chr1 141083832 141084115 -101580238 + MER61D LTR ERV1 208 501 0 9339 104 60 38 chr1 141084120 141085556 -101578797 + THE1C-int LTR MaLR 59 1525 -55 281 284 43 88 chr1 141085867 141086033 -101578320 + L1ME4a LINE L1 5541 5713 -408 2006 155 0 0 chr1 141086033 141086336 -101578017 - AluSx SINE Alu -9 303 1 281 284 43 88 chr1 141086336 141086513 -101577840 + L1ME4a LINE L1 5713 5864 -257 2523 68 102 6 chr1 141086513 141086836 -101577517 - THE1A LTR MaLR 0 355 2 281 284 43 88 chr1 141086836 141086914 -101577439 + L1ME4a LINE L1 5864 5944 -177 588 256 100 6 chr1 141086920 141087100 -101577253 + MIR SINE MIR 2 198 -64 2486 137 7 79 chr1 141087464 141087908 -101576445 + MLT2D LTR ERVL 1 412 -2 371 319 52 44 chr1 141089093 141089322 -101575031 - MIR SINE MIR -4 258 28 1454 207 64 70 chr1 141089761 141090201 -101574152 - MER66A LTR ERV1 -40 438 2 303 261 46 0 chr1 141090216 141090322 -101574031 + MIR SINE MIR 83 147 -61 2006 101 52 14 chr1 141090362 141090650 -101573703 - AluSq SINE Alu -14 299 1 3937 94 2 17 chr1 141091215 141091734 -101572619 + MER9 LTR ERVK 1 511 0 3753 89 6 26 chr1 141091734 141092264 -101572089 + HERVK9 LTR ERVK 1 519 -5397 231 129 0 0 chr1 141092264 141092295 -101572058 + MER9 LTR ERVK 214 244 -267 1999 145 0 0 chr1 141092421 141092850 -101571503 - AluJb SINE Alu 0 429 1 225 273 0 0 chr1 141093074 141093140 -101571213 + (TAAA)n Simple_repeat Simple_repeat 2 67 0 1061 231 71 23 chr1 141093215 141093521 -101570832 + L1MC/D LINE L1 5295 5605 -2197 251 234 156 13 chr1 141093521 141093598 -101570755 + L2 LINE L2 3226 3313 0 235 247 37 62 chr1 141093711 141093792 -101570561 - MIR SINE MIR -103 105 27 22755 32 0 4 chr1 141094826 141098198 -101566155 + L1PA2 LINE L1 2772 6150 -5 358 185 98 22 chr1 141098205 141098297 -101566056 + L1MA4A LINE L1 6182 6280 -23 238 313 75 20 chr1 141098354 141098501 -101565852 - MIR SINE MIR -73 189 35 2140 116 3 0 chr1 141098747 141099041 -101565312 + AluSx SINE Alu 1 295 -17 236 308 8 43 chr1 141100378 141100495 -101563858 - L3 LINE CR1 -83 1494 1382 2059 112 91 38 chr1 141100495 141100834 -101563519 + THE1B LTR MaLR 1 357 -7 1662 161 46 23 chr1 141101562 141101867 -101562486 + AluJb SINE Alu 1 312 0 719 204 81 52 chr1 141102117 141102289 -101562064 - MER45A DNA AcHobo 0 178 2 584 326 64 8 chr1 141102310 141102398 -101561955 + MIR SINE MIR 14 96 -166 799 222 29 111 chr1 141102398 141102546 -101561807 - MER58A DNA MER1_type -2197 223 101 10797 51 24 36 chr1 141102546 141103950 -101560403 + SVA Other Other 1 1386 0 799 222 29 111 chr1 141103950 141104044 -101560309 - MER58A DNA MER1_type -2319 101 1 584 326 64 8 chr1 141104044 141104191 -101560162 + MIR SINE MIR 96 262 0 282 348 37 18 chr1 141104736 141104900 -101559453 + MIR SINE MIR 45 211 -51 277 185 259 74 chr1 141105049 141105184 -101559169 + L2 LINE L2 3153 3312 -1 21 0 0 0 chr1 141105451 141105472 -101558881 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 141105596 141105617 -101558736 + AT_rich Low_complexity Low_complexity 1 21 0 180 315 0 19 chr1 141105679 141105733 -101558620 - MIR SINE MIR -56 152 100 770 223 44 34 chr1 141105974 141106318 -101558035 + L1MA5 LINE L1 4182 6312 0 800 316 48 9 chr1 141106335 141106775 -101557578 + L1M4 LINE L1 4377 4833 -1313 326 310 44 6 chr1 141106810 141106968 -101557385 + L1MEc LINE L1 39 202 -6194 810 292 77 53 chr1 141107401 141108244 -101556109 + L1MEc LINE L1 661 1523 -4873 3923 156 35 2 chr1 141108363 141109482 -101554871 - L1MA5 LINE L1 -360 5940 4793 264 281 33 13 chr1 141109742 141109895 -101554458 + (TA)n Simple_repeat Simple_repeat 2 157 0 610 290 91 22 chr1 141109949 141110180 -101554173 + MIR SINE MIR 3 249 -13 2933 81 42 19 chr1 141110181 141110591 -101553762 - L1PA11 LINE L1 0 6174 5756 3761 97 0 11 chr1 141110591 141111198 -101553155 + L1PA11 LINE L1 5177 5777 -391 476 231 114 22 chr1 141113036 141113216 -101551137 + MIR SINE MIR 16 208 -54 864 239 116 24 chr1 141113497 141113832 -101550521 + L1ME4a LINE L1 5500 5865 -256 403 217 8 23 chr1 141113862 141113968 -101550385 + L1MB3 LINE L1 5576 5686 -497 2148 155 71 18 chr1 141114025 141114418 -101549935 + L1MB3 LINE L1 5675 6088 -95 408 347 68 31 chr1 141114419 141114641 -101549712 + L3 LINE CR1 1015 1244 -333 269 135 19 0 chr1 141114739 141114791 -101549562 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 2551 117 0 8 chr1 141114792 141115159 -101549194 + L1PB1 LINE L1 5785 6148 -3 859 197 7 0 chr1 141115551 141115698 -101548655 + FRAM SINE Alu 5 152 -24 427 384 95 23 chr1 141116023 141116466 -101547887 - L2 LINE L2 -502 2812 2338 533 311 85 40 chr1 141116470 141116914 -101547439 + MLT1J1 LTR MaLR 1 425 -21 295 282 29 10 chr1 141118107 141118210 -101546143 + MLT2E LTR ERVL 510 614 -14 373 245 354 0 chr1 141118868 141119015 -101545338 + MIR SINE MIR 14 212 -50 1045 138 35 6 chr1 141119056 141119230 -101545123 - Tigger1 DNA MER2_type -12 2406 2228 12422 165 34 19 chr1 141119233 141120058 -101544295 + L1MA4 LINE L1 2890 3701 -2599 2912 3 0 0 chr1 141120058 141120367 -101543986 - AluYa5 SINE Alu -2 309 1 12422 165 34 19 chr1 141120367 141121967 -101542386 + L1MA4 LINE L1 3701 5373 -927 216 97 0 0 chr1 141121967 141121998 -101542355 + (TAA)n Simple_repeat Simple_repeat 2 32 0 12422 165 34 19 chr1 141121998 141122924 -101541429 + L1MA4 LINE L1 5373 6284 -16 7472 117 35 20 chr1 141122924 141124081 -101540272 - Tigger1 DNA MER2_type -180 2238 1064 588 95 0 12 chr1 141124073 141124157 -101540196 + LTR1 LTR ERV1 703 785 0 * 12177 150 18 7 chr1 141124292 141127082 -101537271 + HUERS-P2 LTR ERV1 204 3087 -1 3899 133 67 63 chr1 141127125 141127907 -101536446 + LTR1 LTR ERV1 1 785 0 994 93 0 0 chr1 141127907 141128046 -101536307 - Tigger1 DNA MER2_type -1260 1158 1020 * 5420 121 13 4 chr1 141128043 141128881 -101535472 - Tigger1 DNA MER2_type -1572 846 1 200 348 51 67 chr1 141129172 141129425 -101534928 - L2 LINE L2 -213 3059 2811 237 327 134 39 chr1 141129541 141129795 -101534558 - L2 LINE L2 -703 2611 2334 319 312 58 36 chr1 141130533 141130671 -101533682 + L2 LINE L2 3173 3313 0 364 313 38 23 chr1 141130677 141130808 -101533545 - MIR SINE MIR -115 147 15 828 283 134 3 chr1 141131452 141131759 -101532594 + L2 LINE L2 2595 2941 -373 385 252 40 41 chr1 141132091 141132241 -101532112 - MIR SINE MIR -58 150 40 546 226 78 0 chr1 141132266 141132381 -101531972 - L2 LINE L2 0 3313 3190 8417 215 74 35 chr1 141132414 141134444 -101529909 - L1ME1 LINE L1 -3 6232 4283 1676 163 35 10 chr1 141134444 141134766 -101529587 - AluJo SINE Alu 0 329 1 8417 215 74 35 chr1 141134766 141134991 -101529362 - L1ME1 LINE L1 -1952 4283 4068 3413 21 16 39 chr1 141134991 141135426 -101528927 - L1PA4 LINE L1 -1 6154 5730 8417 215 74 35 chr1 141135426 141136697 -101527656 - L1ME1 LINE L1 -2167 4068 2558 330 265 228 5 chr1 141136727 141136916 -101527437 - L1ME1 LINE L1 -6120 276 46 1422 251 130 34 chr1 141136923 141137245 -101527108 - L2 LINE L2 -278 3035 2640 1456 105 46 9 chr1 141137245 141137464 -101526889 - MER30 DNA MER1_type 0 230 4 1422 251 130 34 chr1 141137464 141137664 -101526689 - L2 LINE L2 -673 2640 2461 395 281 281 6 chr1 141139203 141139374 -101524979 - MIR SINE MIR -43 219 2 423 0 0 0 chr1 141140654 141140701 -101523652 + (TG)n Simple_repeat Simple_repeat 1 47 0 200 262 330 0 chr1 141141858 141141961 -101522392 - MIR SINE MIR -10 252 116 943 181 6 35 chr1 141142350 141142559 -101521794 + AluJb SINE Alu 129 312 0 231 156 22 0 chr1 141143210 141143255 -101521098 - MER75 DNA T2_type 0 504 459 268 129 0 32 chr1 141143283 141143345 -101521008 + L1MB7 LINE L1 6125 6184 0 472 279 154 0 chr1 141143527 141143735 -101520618 - MIR SINE MIR -16 246 7 316 329 169 22 chr1 141144195 141144420 -101519933 + MIR SINE MIR 4 261 -1 496 246 77 92 chr1 141144855 141145027 -101519326 + MIR SINE MIR 7 175 -87 1021 165 60 0 chr1 141145027 141145245 -101519108 + L1MA3 LINE L1 6065 6295 -10 496 246 77 92 chr1 141145245 141145332 -101519021 + MIR SINE MIR 175 262 0 196 286 36 36 chr1 141145374 141145458 -101518895 - L2 LINE L2 -1 3271 3188 237 139 0 0 chr1 141145867 141145910 -101518443 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 2412 78 0 0 chr1 141147402 141147697 -101516656 + AluY SINE Alu 1 295 -16 2348 100 0 0 chr1 141156278 141156579 -101507774 + AluSg SINE Alu 1 301 -9 238 214 0 18 chr1 141158587 141158643 -101505710 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 249 92 79 13 chr1 141160447 141160523 -101503830 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 29 28 0 0 chr1 141160527 141160563 -101503790 + AT_rich Low_complexity Low_complexity 1 36 0 196 426 30 13 chr1 141161658 141161888 -101502465 - L2 LINE L2 -219 3053 2820 541 219 0 33 chr1 141162062 141162213 -101502140 + HAL1b LINE L1 1199 1344 -4 1938 175 78 7 chr1 141162832 141163267 -101501086 - Charlie1b DNA MER1_type -1 522 57 274 259 103 0 chr1 141163664 141163780 -101500573 - MIR SINE MIR -13 249 122 1375 184 0 27 chr1 141164390 141164651 -101499702 + AluJo SINE Alu 43 296 -16 544 197 63 0 chr1 141165077 141165204 -101499149 - L1M2 LINE L1 -596 5695 5561 384 286 109 6 chr1 141165222 141165397 -101498956 - L1M4 LINE L1 -1624 4522 4330 2838 178 22 0 chr1 141165555 141166094 -101498259 - L1MB3 LINE L1 -8 6175 5625 887 285 92 18 chr1 141166139 141166651 -101497702 - L1M4 LINE L1 -2049 4097 3548 228 259 26 9 chr1 141167012 141167128 -101497225 - L1M4 LINE L1 -3834 2312 2195 35 54 0 0 chr1 141167373 141167429 -101496924 + AT_rich Low_complexity Low_complexity 1 56 0 1119 310 81 23 chr1 141167512 141169370 -101494983 + L1ME3A LINE L1 3884 5852 -318 4942 164 24 27 chr1 141169914 141170840 -101493513 - MER49 LTR ERV1 0 923 1 1250 130 17 29 chr1 141171013 141171251 -101493102 + L1MA6 LINE L1 6066 6300 0 580 244 100 22 chr1 141171490 141171719 -101492634 - MLT1K LTR MaLR -26 562 316 676 305 36 12 chr1 141172365 141172614 -101491739 - MIR SINE MIR -2 260 6 244 326 196 25 chr1 141174160 141174528 -101489825 + L2 LINE L2 2430 2860 -454 391 309 79 22 chr1 141174716 141174855 -101489498 + L2 LINE L2 3126 3272 0 257 125 0 21 chr1 141174940 141174988 -101489365 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 207 0 0 0 chr1 141175754 141175777 -101488576 + (CA)n Simple_repeat Simple_repeat 1 23 0 185 0 40 0 chr1 141176044 141176069 -101488284 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 381 43 0 0 chr1 141176068 141176115 -101488238 + (GA)n Simple_repeat Simple_repeat 2 48 0 1055 330 199 8 chr1 141177311 141177524 -101486829 - L3 LINE CR1 -129 1448 1277 321 26 0 0 chr1 141177524 141177562 -101486791 + (TCCA)n Simple_repeat Simple_repeat 2 39 0 1055 330 199 8 chr1 141177562 141178081 -101486272 - L3 LINE CR1 -300 1277 576 666 275 86 12 chr1 141178328 141178572 -101485781 + MIR SINE MIR 1 262 0 243 324 40 102 chr1 141178814 141179089 -101485264 - L2 LINE L2 -37 3235 2978 245 355 75 60 chr1 141179351 141179686 -101484667 - L2 LINE L2 -672 2642 2303 697 269 152 65 chr1 141180757 141180952 -101483401 - L2 LINE L2 0 3313 3136 1301 94 204 0 chr1 141180952 141181143 -101483210 + MER30 DNA MER1_type 1 230 0 697 269 152 65 chr1 141181143 141181588 -101482765 - L2 LINE L2 -177 3136 2593 319 309 87 7 chr1 141181617 141181766 -101482587 + L2 LINE L2 2434 2594 -720 4709 241 107 84 chr1 141181766 141186287 -101478066 - L1MEc LINE L1 -348 5891 1311 297 0 0 0 chr1 141186381 141186414 -101477939 + (CA)n Simple_repeat Simple_repeat 2 34 0 609 332 136 18 chr1 141186461 141187002 -101477351 + L2 LINE L2 2687 3291 -22 198 71 0 0 chr1 141187009 141187037 -101477316 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 1206 299 37 60 chr1 141187039 141187691 -101476662 - L2 LINE L2 -1042 2272 1636 2356 287 112 32 chr1 141187697 141188833 -101475520 - L2 LINE L2 -748 2566 1340 526 307 58 37 chr1 141189099 141189425 -101474928 - L1MEc LINE L1 -4037 2359 2027 29 28 0 0 chr1 141190599 141190635 -101473718 + AT_rich Low_complexity Low_complexity 1 36 0 6240 117 24 6 chr1 141205128 141206093 -101458260 - L1MA3 LINE L1 0 6305 5324 1465 169 25 21 chr1 141206093 141206565 -101457788 - L1M1 LINE L1 -743 5403 5076 11536 57 3 0 chr1 141206576 141208737 -101455616 - L1PA5 LINE L1 0 6154 3989 * 13843 44 0 3 chr1 141208724 141211098 -101453255 + L1PA4 LINE L1 3781 6153 -2 1401 115 19 0 chr1 141211110 141211319 -101453034 + Tigger4(Zombi) DNA MER2_type 2514 2726 -5 22 0 0 0 chr1 141211495 141211517 -101452836 + AT_rich Low_complexity Low_complexity 1 22 0 309 149 19 47 chr1 141211517 141211624 -101452729 + (TA)n Simple_repeat Simple_repeat 2 105 0 398 57 75 0 chr1 141211624 141211677 -101452676 - L1PA7 LINE L1 -14 6140 6084 12173 129 17 47 chr1 141211677 141214178 -101450175 - L1P3 LINE L1 -3956 2505 5 1944 137 0 19 chr1 141214310 141214646 -101449707 - L1PA15 LINE L1 -5 6863 6354 2731 160 9 5 chr1 141214646 141215072 -101449281 - MSTA LTR MaLR 0 428 1 1944 137 0 19 chr1 141215072 141215101 -101449252 - L1PA15 LINE L1 -514 6354 6326 14442 48 5 1 chr1 141215101 141217616 -101446737 + L1PA5 LINE L1 3602 6125 -29 1355 37 6 12 chr1 141217617 141217779 -101446574 + L1PA5 LINE L1 5987 6147 -7 16860 207 17 23 chr1 141217779 141222122 -101442231 - L1PA15 LINE L1 -531 6337 2023 6026 142 21 7 chr1 141222116 141223398 -101440955 - L1PB1 LINE L1 -2 6149 4854 * 269 298 8 8 chr1 141273648 141273772 -101390581 + GA-rich Low_complexity Low_complexity 1 124 0 205 343 0 0 chr1 141273829 141273928 -101390425 + GA-rich Low_complexity Low_complexity 2 100 0 370 288 130 17 chr1 141277173 141277350 -101387003 - MIR3 SINE MIR -6 202 6 494 198 99 0 chr1 141277485 141277576 -101386777 + MER81 DNA DNA 15 114 0 243 0 0 0 chr1 141282001 141282028 -101382325 + (TC)n Simple_repeat Simple_repeat 2 28 0 378 270 24 48 chr1 141282304 141282430 -101381923 - MIR3 SINE MIR -85 123 1 778 144 56 0 chr1 141283095 141283220 -101381133 - L1M2 LINE L1 -768 5544 5413 374 234 11 0 chr1 141283207 141283301 -101381052 - L1M4 LINE L1 -1094 6471 6377 * 6897 68 11 35 chr1 141283396 141284926 -101379427 - SVA Other Other -839 1385 10 215 169 14 0 chr1 141284943 141285014 -101379339 + GA-rich Low_complexity Low_complexity 2 73 0 385 173 27 13 chr1 141285124 141285199 -101379154 - AluSc SINE Alu -220 79 4 187 311 14 0 chr1 141287087 141287161 -101377192 - MIR SINE MIR -167 95 21 322 263 0 0 chr1 141287758 141287838 -101376515 - L1M4 LINE L1 -3947 3618 3539 234 0 0 0 chr1 141288372 141288398 -101375955 + (TA)n Simple_repeat Simple_repeat 2 27 0 318 214 119 40 chr1 141291588 141291714 -101372639 + L2 LINE L2 3137 3272 0 402 21 0 0 chr1 141291876 141291923 -101372430 + (TG)n Simple_repeat Simple_repeat 1 47 0 349 380 21 5 chr1 141292469 141292661 -101371692 + L2 LINE L2 2869 3063 -209 831 345 48 21 chr1 141293958 141294553 -101369800 + L2 LINE L2 2694 3310 -3 219 382 45 0 chr1 141294803 141294892 -101369461 + L2 LINE L2 3139 3231 -41 272 336 44 0 chr1 141294925 141295028 -101369325 + MIR SINE MIR 40 146 -62 5798 108 31 7 chr1 141295045 141296066 -101368287 + L1PA16 LINE L1 5121 6163 -3 2219 214 17 5 chr1 141296221 141296642 -101367711 + MSTB LTR MaLR 1 426 0 252 146 24 0 chr1 141296642 141296683 -101367670 + MSTB-int LTR MaLR 1 42 -1609 3415 179 22 30 chr1 141296788 141297190 -101367163 + MSTB-int LTR MaLR 1019 1417 -234 2089 131 0 3 chr1 141297190 141297527 -101366826 - AluSg SINE Alu 0 336 1 3415 179 22 30 chr1 141297527 141297761 -101366592 + MSTB-int LTR MaLR 1417 1651 0 2543 158 26 9 chr1 141297761 141298180 -101366173 + MSTB LTR MaLR 1 426 0 270 0 0 0 chr1 141300106 141300136 -101364217 + (T)n Simple_repeat Simple_repeat 1 30 0 2224 131 0 73 chr1 141301405 141301803 -101362550 + MLT1B LTR MaLR 22 390 0 402 211 0 0 chr1 141301992 141302068 -101362285 - L2 LINE L2 0 3272 3197 264 336 9 0 chr1 141302084 141302194 -101362159 + MIR3 SINE MIR 77 187 -21 262 75 0 0 chr1 141303372 141303412 -101360941 - L1PB1 LINE L1 0 6151 6112 1994 124 11 0 chr1 141303419 141303694 -101360659 - AluSq SINE Alu -35 278 1 1945 112 72 0 chr1 141304343 141304621 -101359732 - AluSx SINE Alu -14 298 1 879 339 106 20 chr1 141304785 141305525 -101358828 - L2 LINE L2 -199 3073 2257 1689 151 17 108 chr1 141305663 141305942 -101358411 + L1MA9 LINE L1 5934 6164 -148 2720 129 42 17 chr1 141305942 141306416 -101357937 - L1MA2 LINE L1 0 6304 5819 1689 151 17 108 chr1 141306416 141306553 -101357800 + L1MA9 LINE L1 6164 6312 0 501 353 0 5 chr1 141306607 141306797 -101357556 + MIR3 SINE MIR 19 207 -1 451 186 16 0 chr1 141307984 141308095 -101356258 + L1M4 LINE L1 4958 5072 -1074 192 384 61 0 chr1 141308271 141308370 -101355983 + L2 LINE L2 3136 3240 -32 254 235 73 0 chr1 141308420 141308488 -101355865 - L2 LINE L2 0 3272 3200 596 283 21 29 chr1 141308610 141308850 -101355503 - MIR SINE MIR -7 255 18 205 309 30 124 chr1 141309000 141309233 -101355120 - L2 LINE L2 -94 3178 2968 7314 34 8 2 chr1 141309329 141310387 -101353966 + L1PA5 LINE L1 5054 6118 -36 295 256 12 12 chr1 141310444 141310530 -101353823 - L3 LINE CR1 -37 1540 1455 767 273 43 6 chr1 141311413 141311733 -101352620 - L2 LINE L2 -251 3062 2735 234 62 0 0 chr1 141312065 141312097 -101352256 + (CA)n Simple_repeat Simple_repeat 2 33 0 1626 112 23 12 chr1 141312165 141312423 -101351930 - L1MA9 LINE L1 -55 6257 5997 * 9103 225 53 36 chr1 141312417 141315493 -101348860 - L1 LINE L1 -1786 5779 2763 1978 163 0 3 chr1 141315493 141315800 -101348553 - AluJb SINE Alu -6 306 1 9103 225 53 36 chr1 141315800 141316566 -101347787 - L1 LINE L1 -4802 2763 2012 207 184 0 0 chr1 141317723 141317761 -101346592 + MIR3 SINE MIR 117 154 -54 238 258 0 0 chr1 141318073 141318139 -101346214 - MIR SINE MIR -13 249 184 1795 158 28 6 chr1 141318144 141318461 -101345892 - L1PA16 LINE L1 -9 6157 5834 707 293 19 9 chr1 141318466 141318681 -101345672 - MIR SINE MIR -44 218 2 2933 166 63 26 chr1 141319987 141320572 -101343781 - L1MB8 LINE L1 0 6178 5572 188 277 60 24 chr1 141320721 141320804 -101343549 + L2 LINE L2 3187 3272 0 247 257 64 107 chr1 141321118 141321305 -101343048 + MIR3 SINE MIR 18 196 -12 2324 82 109 0 chr1 141321944 141322284 -101342069 - MER51B LTR ERV1 0 377 1 190 349 0 84 chr1 141324319 141324402 -101339951 - MIR SINE MIR -94 114 39 220 316 26 0 chr1 141324525 141324601 -101339752 + MIR SINE MIR 151 228 -34 204 400 43 0 chr1 141326304 141326444 -101337909 + L2 LINE L2 3125 3270 -2 347 227 13 0 chr1 141326521 141326596 -101337757 + MIR SINE MIR 29 104 -158 276 170 19 0 chr1 141326581 141326634 -101337719 + MIR SINE MIR 209 262 0 * 342 169 102 76 chr1 141326862 141326980 -101337373 + MER103 DNA DNA 1 121 -45 254 296 63 117 chr1 141327096 141327319 -101337034 - L2 LINE L2 -130 3142 2932 384 369 72 45 chr1 141327385 141327978 -101336375 - L2 LINE L2 -461 2853 2245 1034 318 136 39 chr1 141329573 141330260 -101334093 - L2 LINE L2 -1 3312 2508 1954 172 0 0 chr1 141330260 141330557 -101333796 + AluSx SINE Alu 1 297 -15 1034 318 136 39 chr1 141330557 141330797 -101333556 - L2 LINE L2 -805 2508 2293 836 278 104 21 chr1 141330793 141331131 -101333222 + L2 LINE L2 1891 2256 -1058 * 1641 92 0 0 chr1 141332692 141332899 -101331454 - AluY SINE Alu -6 305 99 1805 209 44 29 chr1 141333023 141333501 -101330852 - MER31A LTR ERV1 0 485 1 2432 207 25 116 chr1 141333566 141335020 -101329333 + L1M2c LINE L1 2533 3782 -3783 8644 30 1 7 chr1 141335030 141336120 -101328233 - L1P LINE L1 -1045 5101 4019 310 169 22 0 chr1 141336129 141336218 -101328135 + (TA)n Simple_repeat Simple_repeat 1 91 0 2135 127 127 21 chr1 141336237 141336624 -101327729 - MSTA LTR MaLR 0 428 1 429 197 121 23 chr1 141336646 141336842 -101327511 - L1ME1 LINE L1 -165 6001 5801 184 0 30 61 chr1 141336860 141336893 -101327460 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1110 130 25 20 chr1 141336893 141337093 -101327260 - Tigger2 DNA MER2_type -238 2480 2280 228 100 0 0 chr1 141337131 141337171 -101327182 + (TA)n Simple_repeat Simple_repeat 2 41 0 1698 166 35 35 chr1 141337184 141337527 -101326826 - MLT2B1 LTR ERVL -175 345 3 334 274 42 0 chr1 141337527 141337617 -101326736 + LTR33 LTR ERVL 98 191 -330 241 194 42 14 chr1 141337674 141337746 -101326607 + LTR33 LTR ERVL 448 521 0 278 313 42 21 chr1 141337750 141337894 -101326459 - L2 LINE L2 -193 3079 2933 4029 205 30 13 chr1 141338314 141339373 -101324980 + L1M2c LINE L1 3769 4845 -2720 779 180 0 6 chr1 141339477 141339655 -101324698 + L1MA4 LINE L1 2985 3161 -2985 531 163 0 0 chr1 141339732 141339879 -101324474 + (TA)n Simple_repeat Simple_repeat 2 148 0 10603 151 31 19 chr1 141339879 141341443 -101322910 + L1MA4 LINE L1 3183 4726 -1574 580 36 36 0 chr1 141341443 141341526 -101322827 + L1PA4 LINE L1 6065 6150 -5 10603 151 31 19 chr1 141341526 141343051 -101321302 + L1MA4 LINE L1 4726 6300 0 453 313 77 11 chr1 141343353 141343535 -101320818 + MIR SINE MIR 17 210 -52 22 35 0 0 chr1 141343910 141343939 -101320414 + AT_rich Low_complexity Low_complexity 1 29 0 195 323 52 10 chr1 141344346 141344442 -101319911 - L2 LINE L2 -1476 1838 1739 1114 158 0 0 chr1 141344514 141344685 -101319668 - AluSg/x SINE Alu -8 302 132 343 44 0 0 chr1 141344685 141344730 -101319623 + AluSq/x SINE Alu 89 133 -170 327 247 210 25 chr1 141344754 141344916 -101319437 + L2 LINE L2 2557 2748 -566 825 297 69 4 chr1 141344949 141345195 -101319158 - L2 LINE L2 -243 3070 2809 231 114 0 0 chr1 141345271 141345306 -101319047 + (CACG)n Simple_repeat Simple_repeat 1 35 0 1137 194 40 5 chr1 141345557 141345758 -101318595 + AluJo SINE Alu 86 293 -19 180 0 0 0 chr1 141345779 141345799 -101318554 + (TA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr1 141346467 141346487 -101317866 + (TC)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr1 141346487 141346511 -101317842 + (TA)n Simple_repeat Simple_repeat 2 25 0 578 250 87 49 chr1 141347267 141347451 -101316902 + MIR SINE MIR 40 230 -32 283 353 15 15 chr1 141347877 141348013 -101316340 - L3 LINE CR1 -132 1445 1310 1261 218 83 19 chr1 141348184 141348496 -101315857 + MER58B DNA MER1_type 9 340 -1 280 310 53 35 chr1 141349137 141349250 -101315103 - L2 LINE L2 -8 3264 3150 186 118 0 0 chr1 141349274 141349308 -101315045 + (TG)n Simple_repeat Simple_repeat 1 34 0 225 268 47 0 chr1 141349308 141349424 -101314929 + L1ME4a LINE L1 5969 6093 -28 250 294 15 0 chr1 141349963 141350031 -101314322 + MIR3 SINE MIR 137 205 -3 231 296 62 25 chr1 141351074 141351155 -101313198 + MIR SINE MIR 30 113 -95 531 337 103 59 chr1 141352186 141352721 -101311632 + L2 LINE L2 2716 3272 0 281 258 92 25 chr1 141354191 141354311 -101310042 - L2 LINE L2 -1294 2020 1893 441 147 0 0 chr1 141354390 141354458 -101309895 + AluSx SINE Alu 1 68 -245 1618 121 0 17 chr1 141354507 141354739 -101309614 + AluSx SINE Alu 68 295 -15 711 347 117 36 chr1 141354745 141355071 -101309282 - L2 LINE L2 -1544 1770 1472 2283 150 13 3 chr1 141355071 141355451 -101308902 - L1PB3 LINE L1 -4 6150 5767 711 347 117 36 chr1 141355451 141355817 -101308536 - L2 LINE L2 -1842 1472 997 1620 216 24 43 chr1 141355817 141356239 -101308114 - MLT2D LTR ERVL 0 414 1 711 347 117 36 chr1 141356239 141356377 -101307976 - L2 LINE L2 -2317 997 872 1585 157 19 15 chr1 141356413 141356763 -101307590 + L1M3e LINE L1 1816 2166 -4861 1452 178 55 63 chr1 141356974 141357339 -101307014 + MLT1A1 LTR MaLR 1 362 -3 193 312 117 0 chr1 141357535 141357612 -101306741 - MIR3 SINE MIR -45 163 78 437 281 61 0 chr1 141357680 141357794 -101306559 - L2 LINE L2 -5 3267 3147 252 322 39 50 chr1 141357793 141357973 -101306380 - MIR SINE MIR -20 242 65 * 428 273 101 4 chr1 141358278 141358516 -101305837 + L1ME4a LINE L1 5670 5930 -191 2550 108 5 22 chr1 141359264 141359634 -101304719 + THE1B LTR MaLR 1 364 0 335 297 23 38 chr1 141359667 141359801 -101304552 + MIR SINE MIR 14 149 -65 444 325 55 0 chr1 141359826 141359989 -101304364 - HAL1 LINE L1 -1196 1311 1140 951 158 5 33 chr1 141359992 141360176 -101304177 - MER3 DNA MER1_type 0 209 31 500 154 12 64 chr1 141360365 141360502 -101303851 + L1MA4A LINE L1 6166 6296 -4 3330 129 62 31 chr1 141360508 141360967 -101303386 - L1MA7 LINE L1 -7 6284 5798 207 0 0 0 chr1 141360967 141360990 -101303363 + (TG)n Simple_repeat Simple_repeat 2 24 0 3330 129 62 31 chr1 141360990 141361172 -101303181 - L1MA7 LINE L1 -493 5798 5623 1926 119 32 3 chr1 141361175 141361519 -101302834 + L1MA7 LINE L1 5254 5607 -705 443 259 18 0 chr1 141361881 141361993 -101302360 - L2 LINE L2 -10 3303 3190 328 359 96 41 chr1 141363107 141363377 -101300976 - L3 LINE CR1 -1 1576 1292 2479 86 0 0 chr1 141363418 141363721 -101300632 - AluSx SINE Alu -9 303 1 490 249 181 28 chr1 141363754 141363931 -101300422 + MIR SINE MIR 56 259 -3 395 170 27 71 chr1 141363923 141364035 -101300318 - L3 LINE CR1 -282 1295 1189 * 230 315 76 11 chr1 141364039 141364131 -101300222 + L2 LINE L2 3149 3246 -26 189 345 82 36 chr1 141364886 141364996 -101299357 + L3b LINE CR1 1456 1570 -13 182 299 47 71 chr1 141367043 141367170 -101297183 - L2 LINE L2 -176 3096 2973 131 77 0 0 chr1 141370748 141371033 -101293320 + AT_rich Low_complexity Low_complexity 1 285 0 227 143 0 0 chr1 141371126 141371168 -101293185 + L1M LINE L1 5347 5388 -782 878 129 8 0 chr1 141371326 141371450 -101292903 + FLAM_C SINE Alu 9 133 -10 225 0 0 0 chr1 141371597 141371622 -101292731 + (TA)n Simple_repeat Simple_repeat 2 26 0 1405 184 33 54 chr1 141372049 141372905 -101291448 + SVA Other Other 432 847 -539 1634 109 0 0 chr1 141373012 141373223 -101291130 + AluSc SINE Alu 73 283 -26 390 256 106 66 chr1 141373650 141373877 -101290476 - L2 LINE L2 0 3313 3078 276 286 43 130 chr1 141373881 141374066 -101290287 + L2 LINE L2 3009 3177 -95 1102 75 0 14 chr1 141374119 141374265 -101290088 - AluSp/q SINE Alu -12 301 158 1740 269 55 32 chr1 141374521 141375180 -101289173 - L1M3e LINE L1 -6356 674 1 357 301 70 32 chr1 141375216 141375372 -101288981 - MIR SINE MIR -81 181 20 750 230 29 11 chr1 141375832 141376006 -101288347 - MER5B DNA MER1_type -1 177 1 1200 327 85 18 chr1 141376006 141376664 -101287689 + L2 LINE L2 2163 2864 -450 317 385 66 51 chr1 141376671 141376944 -101287409 + L2 LINE L2 2996 3272 0 21 0 0 0 chr1 141377235 141377256 -101287097 + AT_rich Low_complexity Low_complexity 1 21 0 342 295 85 7 chr1 141377353 141377501 -101286852 + MIR SINE MIR 21 179 -66 2916 32 9 0 chr1 141377596 141377942 -101286411 - L1PA3 LINE L1 0 6155 5807 225 309 59 50 chr1 141379038 141379159 -101285194 - MIR SINE MIR -66 142 32 204 40 0 0 chr1 141379824 141379849 -101284504 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 576 290 32 16 chr1 141381048 141381234 -101283119 + MIR SINE MIR 3 191 -71 1615 127 0 4 chr1 141381510 141381738 -101282615 + AluSg/x SINE Alu 83 309 -1 326 244 8 0 chr1 141382758 141382877 -101281476 + (TA)n Simple_repeat Simple_repeat 2 121 0 245 222 16 16 chr1 141382965 141383028 -101281325 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 240 209 0 60 chr1 141383606 141383673 -101280680 + LTR37A LTR ERV1 76 138 -288 506 224 10 41 chr1 141383707 141383761 -101280592 + LTR37A LTR ERV1 244 298 -170 2199 108 24 3 chr1 141383761 141384057 -101280296 - AluSx SINE Alu -10 302 1 506 224 10 41 chr1 141384057 141384184 -101280169 + LTR37A LTR ERV1 298 413 -55 291 284 157 0 chr1 141384812 141384914 -101279439 - L2 LINE L2 -2 3311 3194 21 0 0 0 chr1 141385975 141385996 -101278357 + AT_rich Low_complexity Low_complexity 1 21 0 235 206 0 63 chr1 141386627 141386690 -101277663 + A-rich Low_complexity Low_complexity 1 59 0 27 0 0 0 chr1 141389037 141389064 -101275289 + AT_rich Low_complexity Low_complexity 1 27 0 206 111 200 0 chr1 141396975 141397020 -101267333 + L2 LINE L2 3209 3262 -10 716 186 88 98 chr1 141397690 141398008 -101266345 - L2 LINE L2 -1 3312 2998 284 307 59 74 chr1 141398136 141398338 -101266015 - L2 LINE L2 -52 3220 3022 207 0 0 0 chr1 141398908 141398931 -101265422 + (TTTAG)n Simple_repeat Simple_repeat 3 25 0 1864 157 3 7 chr1 141398931 141399217 -101265136 - AluJb SINE Alu -27 285 1 769 293 49 0 chr1 141399315 141399540 -101264813 - MIR SINE MIR -10 252 17 5920 167 52 17 chr1 141399994 141401426 -101262927 + Cheshire DNA MER1_type 1 1528 -892 5911 83 19 5 chr1 141401426 141402223 -101262130 - L1PA11 LINE L1 -1 6173 5366 1257 196 0 0 chr1 141402223 141402452 -101261901 + Cheshire DNA MER1_type 1517 1745 -675 2322 107 0 7 chr1 141402453 141402734 -101261619 + AluSc SINE Alu 1 281 -28 207 0 0 0 chr1 141402734 141402757 -101261596 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2322 107 0 7 chr1 141402757 141402784 -101261569 + AluSc SINE Alu 281 307 -2 1103 62 8 0 chr1 141402797 141402926 -101261427 + AluY SINE Alu 1 130 -181 2037 179 42 7 chr1 141402927 141403330 -101261023 + Cheshire DNA MER1_type 1733 2149 -271 673 65 7 12 chr1 141403330 141403481 -101260872 + AluSq SINE Alu 73 304 -9 669 123 71 65 chr1 141403481 141403635 -101260718 + Cheshire DNA MER1_type 2146 2300 -120 307 319 35 0 chr1 141403789 141403930 -101260423 - L3 LINE CR1 -353 1224 1079 190 224 41 0 chr1 141403952 141404001 -101260352 - L2 LINE L2 -1 3312 3262 397 174 0 0 chr1 141404996 141405065 -101259288 + MER41A LTR ERV1 400 468 -86 293 362 0 0 chr1 141406229 141406323 -101258030 + MIR SINE MIR 39 132 -76 426 261 12 37 chr1 141407404 141407565 -101256788 + GA-rich Low_complexity Low_complexity 6 162 0 649 261 0 0 chr1 141408983 141409121 -101255232 - MIR SINE MIR -108 154 17 292 272 37 0 chr1 141409798 141409879 -101254474 - MIR3 SINE MIR -27 181 98 1600 173 40 22 chr1 141410202 141410526 -101253827 - MLT2D LTR ERVL -2 412 83 2230 116 103 13 chr1 141410542 141410931 -101253422 + MER4C LTR ERV1 31 454 -11 275 167 56 0 chr1 141411078 141411132 -101253221 + MER113 DNA MER1_type? 6 62 -459 2313 100 0 0 chr1 141411147 141411447 -101252906 - AluSx SINE Alu -12 300 1 324 219 83 0 chr1 141412601 141412697 -101251656 + MIR SINE MIR 129 232 -30 600 274 80 60 chr1 141413146 141413497 -101250856 - L2 LINE L2 0 3313 2956 301 313 45 0 chr1 141413527 141413639 -101250714 - MIR SINE MIR -68 140 24 24 0 0 0 chr1 141414775 141414799 -101249554 + AT_rich Low_complexity Low_complexity 1 24 0 315 271 52 58 chr1 141414954 141415109 -101249244 + L2 LINE L2 3160 3313 0 1102 202 69 0 chr1 141415502 141415735 -101248618 + MIR SINE MIR 12 260 -2 239 143 41 0 chr1 141417499 141417548 -101246805 + T-rich Low_complexity Low_complexity 3 53 0 215 85 17 51 chr1 141417555 141417614 -101246739 + (CCCCCT)n Simple_repeat Simple_repeat 1 57 0 237 65 0 0 chr1 141417617 141417648 -101246705 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 1022 248 59 16 chr1 141417650 141417997 -101246356 - L1ME LINE L1 -505 5657 5295 * 1161 244 60 5 chr1 141417994 141418379 -101245974 + L1M4 LINE L1 4178 4583 -1563 8230 50 8 237 chr1 141418381 141420177 -101244176 - SVA Other Other -1 1385 1 477 126 19 29 chr1 141420181 141420284 -101244069 + CT-rich Low_complexity Low_complexity 1 102 0 552 190 27 29 chr1 141420443 141420986 -101243367 + CT-rich Low_complexity Low_complexity 1 541 0 264 322 158 34 chr1 141421129 141421573 -101242780 + L2 LINE L2 340 838 -2476 227 130 0 22 chr1 141421869 141421915 -101242438 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 284 309 93 0 chr1 141422183 141422280 -101242073 - MER91A DNA MER1_type -1 195 90 260 389 30 15 chr1 141422310 141422441 -101241912 - MER91A DNA MER1_type -63 133 1 379 237 278 5 chr1 141422441 141422635 -101241718 + MIR SINE MIR 16 262 0 13619 148 77 22 chr1 141422646 141423323 -101241030 - Tigger1 DNA MER2_type -1 2417 1778 309 129 43 14 chr1 141423323 141423393 -101240960 - L1PA10 LINE L1 -2 6166 6095 13619 148 77 22 chr1 141423393 141424629 -101239724 - Tigger1 DNA MER2_type -640 1778 355 2229 98 0 0 chr1 141424629 141424932 -101239421 - AluSx SINE Alu 0 310 8 13619 148 77 22 chr1 141424932 141425308 -101239045 - Tigger1 DNA MER2_type -2063 355 1 2008 148 6 27 chr1 141426409 141426754 -101237599 - MER1B DNA MER1_type -1 338 1 193 349 36 65 chr1 141426815 141427181 -101237172 + L2 LINE L2 1073 1430 -1884 472 232 55 78 chr1 141427510 141427694 -101236659 - MER5A DNA MER1_type -6 172 2 207 374 71 24 chr1 141427701 141427912 -101236441 + L2 LINE L2 1465 1685 -1629 294 277 0 0 chr1 141428101 141428166 -101236187 - MIR SINE MIR -7 255 191 292 222 22 33 chr1 141428180 141428270 -101236083 - L1M4 LINE L1 -1284 4862 4774 262 253 80 117 chr1 141429308 141429470 -101234883 + MIR SINE MIR 101 256 -6 7499 31 0 0 chr1 141430293 141431222 -101233131 - L1PA4 LINE L1 -3 6152 5224 509 269 60 15 chr1 141431605 141431806 -101232547 - L1ME1 LINE L1 -243 5923 5714 295 269 73 16 chr1 141431858 141432037 -101232316 - L1ME1 LINE L1 -639 5523 5326 28 0 0 0 chr1 141432043 141432071 -101232282 + AT_rich Low_complexity Low_complexity 1 28 0 863 306 71 16 chr1 141432092 141432655 -101231698 - L1ME1 LINE L1 -842 5304 4711 1904 108 56 0 chr1 141432668 141432954 -101231399 + AluSx SINE Alu 11 312 0 2094 214 79 12 chr1 141432999 141433518 -101230835 - L1ME1 LINE L1 -5 6161 5608 3953 138 81 3 chr1 141433529 141434287 -101230066 - Tigger3(Golem) DNA MER2_type -8 3021 2205 309 200 0 0 chr1 141434290 141434355 -101229998 - L1 LINE L1 -1024 5122 5058 1725 172 0 7 chr1 141485500 141485790 -101178563 - AluSx SINE Alu -24 288 1 2815 123 84 4 chr1 141485790 141486244 -101178109 + Tigger3(Golem) DNA MER2_type 2540 3029 0 253 333 29 0 chr1 141486477 141486546 -101177807 - L2 LINE L2 -44 3228 3158 640 244 161 76 chr1 141487020 141487375 -101176978 + MLT1J2 LTR MaLR 1 381 -69 978 66 50 0 chr1 141488300 141488421 -101175932 + AluSg/x SINE Alu 169 295 -17 1950 106 53 111 chr1 141488476 141488646 -101175707 + THE1C LTR MaLR 1 179 -196 2031 111 25 14 chr1 141488646 141488966 -101175387 + AluSx SINE Alu 1 323 0 1950 106 53 111 chr1 141488966 141489190 -101175163 + THE1C LTR MaLR 179 375 0 588 293 46 6 chr1 141489470 141489644 -101174709 + MIR SINE MIR 28 208 -54 2134 112 10 0 chr1 141489670 141489965 -101174388 - AluSg SINE Alu -12 298 1 435 285 67 44 chr1 141490022 141490580 -101173773 + HAL1b LINE L1 374 582 -749 1002 169 0 0 chr1 141490736 141490896 -101173457 + FRAM SINE Alu 8 167 -9 358 300 104 16 chr1 141491104 141491362 -101172991 + L1MDa LINE L1 2441 2721 -3819 1975 110 4 7 chr1 141491571 141491843 -101172510 - AluSg SINE Alu -18 292 22 963 100 36 0 chr1 141491948 141492088 -101172265 - AluSc SINE Alu -164 145 1 3869 116 51 68 chr1 141492089 141492814 -101171539 - Tigger3b DNA MER2_type -518 713 1 217 297 81 108 chr1 141493012 141493234 -101171119 + L2 LINE L2 3007 3222 -50 2362 76 36 0 chr1 141493843 141494144 -101170209 - AluSx SINE Alu 0 312 1 228 223 0 64 chr1 141494674 141494768 -101169585 + G-rich Low_complexity Low_complexity 3 90 0 26 30 0 0 chr1 141495109 141495142 -101169211 + GC_rich Low_complexity Low_complexity 1 33 0 202 299 93 41 chr1 141497929 141497974 -101166379 + L2 LINE L2 3147 3188 -84 225 94 0 0 chr1 141497974 141498006 -101166347 + (TG)n Simple_repeat Simple_repeat 1 32 0 202 299 93 41 chr1 141498006 141498057 -101166296 + L2 LINE L2 3188 3248 -24 21 0 0 0 chr1 141500348 141500369 -101163984 + AT_rich Low_complexity Low_complexity 1 21 0 496 276 104 8 chr1 141502453 141502587 -101161766 - MIR SINE MIR -106 156 10 792 228 55 5 chr1 141503511 141503709 -101160644 + MIR SINE MIR 23 228 -34 850 158 0 20 chr1 141503997 141504143 -101160210 + FLAM_C SINE Alu 1 143 0 500 289 25 6 chr1 141505140 141505299 -101159054 - Charlie8 DNA MER1_type -2184 233 72 2197 121 0 0 chr1 141505309 141505607 -101158746 + AluSg SINE Alu 1 298 -12 471 264 7 28 chr1 141505764 141505908 -101158445 - MIR SINE MIR -41 221 81 399 41 0 0 chr1 141506603 141506652 -101157701 + (TG)n Simple_repeat Simple_repeat 2 50 0 228 67 0 0 chr1 141506709 141506739 -101157614 + (TG)n Simple_repeat Simple_repeat 1 30 0 216 0 0 0 chr1 141506738 141506762 -101157591 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 984 290 0 8 chr1 141506927 141507179 -101157174 + MIR SINE MIR 13 262 0 2305 226 79 49 chr1 141507232 141507826 -101156527 + MER20B DNA MER1_type 1 623 -160 603 160 24 16 chr1 141507826 141507951 -101156402 - L1MB7 LINE L1 -15 6169 6044 2305 226 79 49 chr1 141507951 141508087 -101156266 + MER20B DNA MER1_type 623 753 -30 1649 191 3 7 chr1 141508148 141508452 -101155901 + AluJo SINE Alu 1 303 0 1834 170 3 0 chr1 141508494 141508782 -101155571 - AluJb SINE Alu -23 289 1 2444 169 32 74 chr1 141508840 141509304 -101155049 + MLT1D LTR MaLR 1 442 -63 1927 157 0 22 chr1 141509304 141509623 -101154730 - AluJb SINE Alu 0 312 1 2444 169 32 74 chr1 141509623 141509685 -101154668 + MLT1D LTR MaLR 442 505 0 386 239 35 26 chr1 141509857 141509970 -101154383 + MIR SINE MIR 28 141 -67 257 238 105 38 chr1 141509956 141510061 -101154292 - L2 LINE L2 -2 3311 3200 * 203 321 0 0 chr1 141510070 141510123 -101154230 + MIR3 SINE MIR 151 203 -5 2564 53 7 0 chr1 141510338 141510639 -101153714 - AluSp SINE Alu -10 303 1 22 0 0 0 chr1 141510819 141510841 -101153512 + AT_rich Low_complexity Low_complexity 1 22 0 2681 153 31 19 chr1 141511317 141511793 -101152560 - LTR15 LTR ERV1 -11 482 1 392 233 145 31 chr1 141511898 141512057 -101152296 + MIR SINE MIR 15 191 -71 1871 136 57 0 chr1 141512202 141512482 -101151871 + AluJb SINE Alu 1 296 -16 2603 149 75 17 chr1 141513572 141514049 -101150304 + MLT1D LTR MaLR 1 505 0 1329 185 27 15 chr1 141514915 141515174 -101149179 + L1MC2 LINE L1 6075 6336 -8 357 162 0 0 chr1 141515178 141515246 -101149107 + (TA)n Simple_repeat Simple_repeat 2 69 0 229 65 0 0 chr1 141515246 141515292 -101149061 + LTR66 LTR ERVL 394 439 -171 * 244 67 0 0 chr1 141515260 141515305 -101149048 - LTR66 LTR ERVL -171 439 395 1948 196 19 19 chr1 141515416 141515778 -101148575 + MLT1A1 LTR MaLR 1 362 -3 2119 130 0 3 chr1 141516269 141516569 -101147784 + AluSx SINE Alu 2 300 -12 3787 120 11 9 chr1 141516578 141517130 -101147223 + MER57A-int LTR ERV1 6594 7146 -391 726 136 93 45 chr1 141517130 141517365 -101146988 + LTR54B LTR ERV1 3 284 -214 996 93 65 0 chr1 141517366 141517505 -101146848 + MER57A-int LTR ERV1 7389 7536 -1 1823 148 36 0 chr1 141517506 141517809 -101146544 + MER57A LTR ERV1 1 314 -89 1017 143 0 0 chr1 141517815 141517962 -101146391 - MER4E LTR ERV1 -9 757 611 8361 107 45 45 chr1 141517962 141518305 -101146048 - MER4B-int LTR ERV1 -3623 2323 1982 1749 152 47 0 chr1 141518305 141518429 -101145924 + AluSx SINE Alu 1 118 -194 207 0 0 0 chr1 141518429 141518452 -101145901 + (CA)n Simple_repeat Simple_repeat 2 24 0 1749 152 47 0 chr1 141518452 141518604 -101145749 + AluSx SINE Alu 118 290 -22 8361 107 45 45 chr1 141518604 141519156 -101145197 - MER4B-int LTR ERV1 -3964 1982 1432 2422 68 10 0 chr1 141519156 141519452 -101144901 + AluY SINE Alu 1 299 -12 8361 107 45 45 chr1 141519452 141520410 -101143943 - MER4B-int LTR ERV1 -4514 1432 1828 1939 119 20 53 chr1 141520410 141520713 -101143640 + AluSx SINE Alu 1 293 -19 8361 107 45 45 chr1 141520713 141521157 -101143196 - MER4B-int LTR ERV1 -4117 1829 1387 3471 143 40 89 chr1 141521151 141521762 -101142591 + HUERS-P1 LTR ERV1 4977 5545 -718 * 2576 57 0 22 chr1 141521762 141522079 -101142274 + AluY SINE Alu 1 310 -1 3471 143 40 89 chr1 141522079 141522232 -101142121 + HUERS-P1 LTR ERV1 5545 5704 -559 260 217 130 0 chr1 141522232 141522301 -101142052 - MER46C DNA MER2_type -147 191 114 373 250 133 8 chr1 141522839 141522967 -101141386 + MIR SINE MIR 103 246 -16 371 214 222 0 chr1 141523171 141523288 -101141065 + MER46C DNA MER2_type 85 227 -111 1701 152 25 53 chr1 141523362 141523535 -101140818 + HUERS-P1 LTR ERV1 5446 5605 -726 2346 93 0 0 chr1 141523535 141523836 -101140517 + AluSc SINE Alu 1 301 -8 1701 152 25 53 chr1 141523836 141524017 -101140336 + HUERS-P1 LTR ERV1 5605 5790 -541 1283 181 151 36 chr1 141524028 141524359 -101139994 + HUERS-P1 LTR ERV1 5905 6273 -58 1526 211 23 16 chr1 141524440 141524743 -101139610 + HUERS-P1 LTR ERV1 5946 6250 -13 244 65 0 0 chr1 141524751 141524782 -101139571 + LTR39 LTR ERV1 588 618 -165 3958 143 16 69 chr1 141524794 141525523 -101138830 + LTR8 LTR ERV1 1 691 0 2178 144 144 24 chr1 141525523 141525557 -101138796 + LTR39 LTR ERV1 310 339 -444 3671 122 82 26 chr1 141525557 141525734 -101138619 - MER51D LTR ERV1 0 657 491 2101 115 0 33 chr1 141525734 141526038 -101138315 - AluSx SINE Alu -18 294 1 3671 122 82 26 chr1 141526038 141526482 -101137871 - MER51D LTR ERV1 -166 491 1 2178 144 144 24 chr1 141526482 141526715 -101137638 + LTR39 LTR ERV1 339 543 -240 2015 81 7 0 chr1 141526715 141526987 -101137366 + AluY SINE Alu 37 310 -1 2178 144 144 24 chr1 141526987 141527141 -101137212 + LTR39 LTR ERV1 543 783 0 589 197 60 119 chr1 141527142 141527360 -101136993 + MER21B LTR ERV1 326 530 -333 587 156 31 0 chr1 141527384 141527480 -101136873 - LTR51 LTR ERV1 0 671 573 2600 118 33 0 chr1 141527509 141527899 -101136454 - MER57A LTR ERV1 0 403 1 * 3036 142 90 8 chr1 141527899 141528268 -101136085 - LTR51 LTR ERV1 -99 572 145 2252 115 0 3 chr1 141528268 141528563 -101135790 - AluSq SINE Alu -19 294 1 3036 142 90 8 chr1 141528563 141528721 -101135632 - LTR51 LTR ERV1 -526 145 1 615 257 36 54 chr1 141528737 141528959 -101135394 + MER21B LTR ERV1 547 764 -99 219 338 63 7 chr1 141529140 141529282 -101135071 - L2 LINE L2 -1252 2062 1913 192 77 0 0 chr1 141529353 141529379 -101134974 + (T)n Simple_repeat Simple_repeat 1 26 0 2671 139 54 30 chr1 141529528 141530026 -101134327 - LTR54 LTR ERV1 0 510 1 2204 197 43 53 chr1 141530026 141530241 -101134112 - MER65-int LTR ERV1 -393 7144 6928 2297 99 3 0 chr1 141530241 141530533 -101133820 - AluSx SINE Alu -19 293 1 2204 197 43 53 chr1 141530533 141530830 -101133523 - MER65-int LTR ERV1 -609 6928 6637 2249 237 36 40 chr1 141530864 141530998 -101133355 - MER65-int LTR ERV1 -768 4103 3970 1655 176 3 21 chr1 141530998 141531318 -101133035 - AluJb SINE Alu 0 317 3 2249 237 36 40 chr1 141531318 141531765 -101132588 - MER65-int LTR ERV1 -901 3970 3523 259 343 53 48 chr1 141532294 141532641 -101131712 + L2 LINE L2 2692 3041 -231 25 0 0 0 chr1 141533094 141533119 -101131234 + AT_rich Low_complexity Low_complexity 1 25 0 283 239 42 0 chr1 141533244 141533315 -101131038 + MIR SINE MIR 118 191 -71 * 308 261 17 0 chr1 141533313 141533428 -101130925 - L2 LINE L2 -1048 2266 2150 238 267 0 0 chr1 141533663 141533723 -101130630 + MIR SINE MIR 182 241 -21 486 328 11 0 chr1 141533727 141533910 -101130443 - L2 LINE L2 -219 3053 2869 391 270 58 22 chr1 141534092 141534229 -101130124 + Charlie2 DNA MER1_type 130 271 -2591 3148 199 76 24 chr1 141534413 141535206 -101129147 + L1ME1 LINE L1 5289 6122 -44 446 207 22 101 chr1 141535095 141535232 -101129121 + L1MA10 LINE L1 6169 6315 -19 * 2453 95 0 0 chr1 141535232 141535536 -101128817 - AluSg SINE Alu -6 304 1 2346 88 0 20 chr1 141535536 141535707 -101128646 - AluSq SINE Alu -10 303 139 2482 73 0 0 chr1 141535707 141536009 -101128344 - AluY SINE Alu -9 302 1 2346 88 0 20 chr1 141536009 141536142 -101128211 - AluSq SINE Alu -174 139 5 446 207 22 101 chr1 141536142 141536182 -101128171 + L1MA10 LINE L1 6313 6333 -1 2163 97 21 7 chr1 141536544 141536833 -101127520 + AluSx SINE Alu 2 294 -18 309 216 80 34 chr1 141537519 141537607 -101126746 - Alu SINE Alu -1 299 208 631 220 170 5 chr1 141537692 141537910 -101126443 + MER63 DNA MER1_type 678 931 -129 1925 95 7 4 chr1 141538930 141539204 -101125149 - LTR4-int LTR ERV1 -3550 1667 1393 2884 135 59 17 chr1 141539210 141540088 -101124265 - LTR4-int LTR ERV1 -3945 1272 247 1008 163 19 91 chr1 141540386 141540650 -101123703 - LTR4 LTR ERV1 0 596 352 4701 115 81 88 chr1 141540659 141542089 -101122264 - pTR5 LTR ERV1 -3 2435 79 653 240 92 92 chr1 141542206 141542564 -101121789 - LTR4 LTR ERV1 -238 358 1 227 150 50 0 chr1 141542596 141542636 -101121717 + Alu SINE Alu 250 291 -9 * 1057 168 153 21 chr1 141542635 141542919 -101121434 - MER61B LTR ERV1 -6 419 1 246 348 105 19 chr1 141543217 141543530 -101120823 + L2 LINE L2 2419 2758 -556 30 59 0 0 chr1 141543654 141543705 -101120648 + AT_rich Low_complexity Low_complexity 1 51 0 319 299 94 20 chr1 141544451 141544695 -101119658 + L1ME4a LINE L1 5640 5901 -220 22 0 0 0 chr1 141544751 141544773 -101119580 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 141544887 141544908 -101119445 + AT_rich Low_complexity Low_complexity 1 21 0 1939 149 7 3 chr1 141545035 141545331 -101119022 - AluSx SINE Alu -10 302 6 2042 126 0 13 chr1 141545385 141545703 -101118650 - L1PB1 LINE L1 -3 6864 6551 1250 134 279 5 chr1 141545713 141545979 -101118374 - L1PB1 LINE L1 -397 6470 6144 * 8183 173 80 11 chr1 141545973 141546169 -101118184 - L1PB1 LINE L1 -3088 3774 3593 2352 109 0 0 chr1 141546169 141546482 -101117871 - AluSq SINE Alu 0 313 1 8183 173 80 11 chr1 141546482 141546776 -101117577 - L1PB1 LINE L1 -3269 3593 3321 3521 109 16 6 chr1 141546776 141547282 -101117071 - MER9 LTR ERVK 0 511 1 8183 173 80 11 chr1 141547282 141548541 -101115812 - L1PB1 LINE L1 -3541 3321 2150 2294 86 28 3 chr1 141548541 141548832 -101115521 - AluSc SINE Alu -11 298 1 8183 173 80 11 chr1 141548832 141550412 -101113941 - L1PB1 LINE L1 -4712 2150 59 1262 88 6 18 chr1 141550492 141550663 -101113690 - MLT2A1 LTR ERVL -83 361 193 249 322 0 22 chr1 141551220 141551310 -101113043 + L2 LINE L2 2568 2655 -659 362 190 0 25 chr1 141551478 141551557 -101112796 + MIR SINE MIR 106 182 -80 2649 124 14 54 chr1 141551591 141551749 -101112604 - MSTA LTR MaLR 0 428 265 2388 95 0 3 chr1 141551749 141552054 -101112299 + AluSx SINE Alu 1 304 -8 2649 124 14 54 chr1 141552054 141552339 -101112014 - MSTA LTR MaLR -163 265 3 505 241 92 14 chr1 141552590 141552731 -101111622 + MIR3 SINE MIR 36 187 -21 386 291 103 23 chr1 141553265 141553440 -101110913 + L2 LINE L2 7 195 -3119 1355 174 33 7 chr1 141553501 141553771 -101110582 - L1MC2 LINE L1 -10 6334 6058 2117 118 6 32 chr1 141553880 141554194 -101110159 + AluSx SINE Alu 1 306 -6 1522 242 299 8 chr1 141554194 141554643 -101109710 + L2 LINE L2 1244 1561 -1753 2130 142 0 3 chr1 141554643 141554954 -101109399 - AluSx SINE Alu -2 310 1 1522 242 299 8 chr1 141554954 141555276 -101109077 + L2 LINE L2 1561 2240 -1074 459 195 11 0 chr1 141555293 141555380 -101108973 + MIR SINE MIR 45 132 -130 219 323 174 0 chr1 141555581 141555748 -101108605 + L2 LINE L2 1828 2023 -1291 399 297 83 70 chr1 141555905 141555968 -101108385 + L2 LINE L2 466 527 -2787 568 181 129 0 chr1 141555968 141556084 -101108269 + AluJo SINE Alu 1 131 -171 399 297 83 70 chr1 141556084 141556648 -101107705 + L2 LINE L2 527 1191 -2123 210 336 90 8 chr1 141556696 141556818 -101107535 + L2 LINE L2 2640 2771 -543 286 284 211 0 chr1 141556826 141556935 -101107418 - MER5A DNA MER1_type -7 182 51 337 279 0 0 chr1 141557130 141557209 -101107144 - MIR3 SINE MIR -2 206 128 189 239 120 33 chr1 141557349 141557441 -101106912 - L2 LINE L2 -4 3309 3210 2451 66 13 0 chr1 141557838 141558141 -101106212 + AluSp SINE Alu 1 307 -6 206 279 88 0 chr1 141558446 141558514 -101105839 + L2 LINE L2 3123 3196 -76 362 232 89 70 chr1 141558939 141559198 -101105155 + L1ME4a LINE L1 5835 6098 -23 1077 176 0 0 chr1 141559200 141559365 -101104988 - FRAM SINE Alu -15 161 1 707 261 46 59 chr1 141559809 141560166 -101104187 - LTR16A1 LTR ERVL -4 453 112 733 188 113 0 chr1 141560248 141560408 -101103945 + AluJo SINE Alu 129 306 -6 2758 184 14 5 chr1 141560437 141560586 -101103767 - L1 LINE L1 -1612 4534 4388 1957 168 0 3 chr1 141560586 141560896 -101103457 - AluSx SINE Alu -3 309 1 2758 184 14 5 chr1 141560896 141561311 -101103042 - L1 LINE L1 -1758 4388 3965 32 0 0 0 chr1 141561500 141561532 -101102821 + AT_rich Low_complexity Low_complexity 1 32 0 182 381 24 12 chr1 141561832 141561916 -101102437 - MIR SINE MIR -101 107 23 24 32 0 0 chr1 141562051 141562082 -101102271 + AT_rich Low_complexity Low_complexity 1 31 0 435 202 45 146 chr1 141562474 141562624 -101101729 + L1MEd LINE L1 705 869 -5250 2148 118 0 0 chr1 141562624 141562904 -101101449 + AluSx SINE Alu 1 280 -32 459 0 0 0 chr1 141562908 141562959 -101101394 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 435 202 45 146 chr1 141562959 141563056 -101101297 + L1MEd LINE L1 872 909 -5210 2452 104 0 0 chr1 141563056 141563364 -101100989 + AluSg SINE Alu 1 308 -2 435 202 45 146 chr1 141563364 141563486 -101100867 + L1MEd LINE L1 909 1042 -5077 2311 99 0 0 chr1 141563929 141564246 -101100107 - AluSx SINE Alu 0 321 5 21 0 0 0 chr1 141565060 141565081 -101099272 + AT_rich Low_complexity Low_complexity 1 21 0 2354 58 41 3 chr1 141565566 141565858 -101098495 + AluY SINE Alu 1 303 -8 1798 85 140 15 chr1 141566094 141566366 -101097987 + AluSg SINE Alu 1 306 -4 2120 130 63 26 chr1 141566645 141567075 -101097278 + L1MA8 LINE L1 5845 6290 -1 254 241 139 51 chr1 141567453 141567590 -101096763 + LTR11 LTR ERV 340 488 -196 462 203 203 14 chr1 141568480 141568623 -101095730 + MIR3 SINE MIR 29 198 -10 211 340 30 10 chr1 141569497 141569597 -101094756 - MIR3 SINE MIR -30 178 77 2506 70 0 3 chr1 141571210 141571509 -101092844 - AluY SINE Alu -13 298 1 283 268 41 21 chr1 141572033 141572130 -101092223 - LTR67 LTR ERVL -358 199 101 201 236 83 90 chr1 141573316 141573460 -101090893 - L2 LINE L2 0 3313 3171 2256 45 45 0 chr1 141573463 141573730 -101090623 + AluY SINE Alu 1 279 -32 1006 270 61 42 chr1 141573740 141574147 -101090206 + L1ME4a LINE L1 5492 5906 -215 396 123 0 0 chr1 141574217 141574290 -101090063 + (GA)n Simple_repeat Simple_repeat 2 74 0 24 0 0 0 chr1 141574476 141574500 -101089853 + AT_rich Low_complexity Low_complexity 1 24 0 483 280 108 5 chr1 141574514 141574700 -101089653 - MIR SINE MIR -13 249 45 332 102 0 34 chr1 141574711 141574770 -101089583 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 302 67 217 0 chr1 141574786 141574846 -101089507 - MER41B LTR ERV1 -81 554 482 558 175 26 0 chr1 141575030 141575144 -101089209 - MIR SINE MIR -17 245 129 1206 111 0 12 chr1 141575826 141575997 -101088356 + AluSg/x SINE Alu 130 298 -12 298 170 38 0 chr1 141576777 141576830 -101087523 + FRAM SINE Alu 53 107 -59 544 122 0 0 chr1 141576830 141576912 -101087441 + AluJ/FRAM SINE Alu 220 301 -11 710 272 42 9 chr1 141577151 141577368 -101086985 - MIR SINE MIR -24 238 15 756 229 117 26 chr1 141577470 141577701 -101086652 + MIR SINE MIR 6 257 -5 21 0 0 0 chr1 141577709 141577730 -101086623 + AT_rich Low_complexity Low_complexity 1 21 0 388 250 52 9 chr1 141578079 141578195 -101086158 + MIR SINE MIR 81 201 -61 269 322 159 34 chr1 141578196 141578749 -101085604 + L2 LINE L2 1466 2087 -1227 2660 20 0 7 chr1 141578751 141579044 -101085309 - AluY SINE Alu -20 291 1 501 322 79 37 chr1 141579079 141579511 -101084842 + L2 LINE L2 2804 3253 -19 283 29 0 0 chr1 141579713 141579748 -101084605 - L1PA8A LINE L1 -346 5785 5751 1954 136 0 0 chr1 141579751 141580031 -101084322 + AluJo SINE Alu 22 301 -11 253 412 111 0 chr1 141580514 141580667 -101083686 + L2 LINE L2 3102 3271 -1 2105 99 46 0 chr1 141581213 141581497 -101082856 - AluSg SINE Alu -13 297 1 534 265 13 97 chr1 141581783 141582021 -101082332 + LTR67 LTR ERVL 19 236 -321 47 33 0 0 chr1 141582236 141582297 -101082056 + AT_rich Low_complexity Low_complexity 1 61 0 345 339 9 0 chr1 141583208 141583317 -101081036 + ERVL LTR ERVL 1937 2046 -3608 599 199 71 30 chr1 141583397 141583663 -101080690 - L1MC5 LINE L1 -30 7931 7655 1011 249 97 105 chr1 141583762 141583940 -101080413 - LTR41 LTR ERVL -16 757 579 4300 167 57 41 chr1 141583940 141584789 -101079564 - MER21B LTR ERV1 -1 862 1 1011 249 97 105 chr1 141584789 141585373 -101078980 - LTR41 LTR ERVL -194 579 1 1048 287 12 21 chr1 141585382 141585720 -101078633 + ERVL LTR ERVL 2979 3313 -2341 649 327 48 8 chr1 141586198 141586446 -101077907 + ERVL LTR ERVL 3384 3641 -2123 1150 313 47 13 chr1 141586515 141586963 -101077390 + ERVL LTR ERVL 3663 4125 -1639 498 339 66 0 chr1 141586980 141587251 -101077102 + ERVL LTR ERVL 4842 5173 -520 231 88 0 0 chr1 141587273 141587307 -101077046 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chr1 141587313 141587334 -101077019 + (GA)n Simple_repeat Simple_repeat 2 22 0 27 29 0 0 chr1 141587544 141587578 -101076775 + AT_rich Low_complexity Low_complexity 1 34 0 458 339 27 9 chr1 141587590 141587811 -101076542 + ERVL LTR ERVL 5199 5423 -341 1775 149 7 4 chr1 141587940 141588221 -101076132 - THE1A LTR MaLR -71 284 3 424 325 94 29 chr1 141588842 141589223 -101075130 + LTR67 LTR ERVL 102 507 -50 257 156 5 17 chr1 141589258 141589483 -101074870 + AluJo SINE Alu 1 292 -10 321 198 0 0 chr1 141589483 141589579 -101074774 + (TA)n Simple_repeat Simple_repeat 1 96 0 373 261 58 29 chr1 141589635 141589773 -101074580 - MIR3 SINE MIR -63 145 4 249 208 0 0 chr1 141590297 141590345 -101074008 + L2 LINE L2 3266 3313 0 1935 245 83 32 chr1 141590912 141591004 -101073349 + MLT1E2 LTR MaLR 5 91 -535 2383 85 3 0 chr1 141591004 141591299 -101073054 + AluSx SINE Alu 1 296 -16 1935 245 83 32 chr1 141591299 141591798 -101072555 + MLT1E2 LTR MaLR 91 626 0 577 259 18 6 chr1 141592064 141592230 -101072123 - MIR3 SINE MIR -11 197 30 487 206 50 81 chr1 141592253 141592413 -101071940 - MER5B DNA MER1_type -2 176 22 1872 137 173 26 chr1 141592736 141593124 -101071229 - MER65A LTR ERV1 0 445 1 7380 194 79 85 chr1 141593124 141593409 -101070944 - MER65A-int LTR ERV1 0 5094 4809 1932 116 19 61 chr1 141593409 141593546 -101070807 + AluSx SINE Alu 1 142 -170 2473 74 0 0 chr1 141593546 141593857 -101070496 + AluY SINE Alu 1 311 0 1932 116 19 61 chr1 141593857 141594029 -101070324 + AluSx SINE Alu 142 297 -15 7380 194 79 85 chr1 141594029 141595480 -101068873 - MER65A-int LTR ERV1 -285 4809 3350 2342 97 0 3 chr1 141595480 141595778 -101068575 + AluSq SINE Alu 1 297 -16 7380 194 79 85 chr1 141595778 141597272 -101067081 - MER65A-int LTR ERV1 -1744 3350 1848 2181 143 0 0 chr1 141597272 141597566 -101066787 + AluSx SINE Alu 1 294 -18 7380 194 79 85 chr1 141597566 141598057 -101066296 - MER65A-int LTR ERV1 -3246 1848 1676 1731 190 10 6 chr1 141598057 141598368 -101065985 - AluJo SINE Alu 0 312 1 7380 194 79 85 chr1 141598368 141598494 -101065859 - MER65A-int LTR ERV1 -3418 1676 1551 * 9145 183 55 72 chr1 141598466 141598547 -101065806 - MER65A-int LTR ERV1 -2377 2494 2413 2039 139 0 3 chr1 141598547 141598842 -101065511 + AluJb SINE Alu 1 294 -18 9145 183 55 72 chr1 141598842 141599735 -101064618 - MER65A-int LTR ERV1 -2458 2413 1507 4200 58 60 76 chr1 141599735 141600355 -101063998 + LTR66 LTR ERVL 1 610 0 9145 183 55 72 chr1 141600355 141601237 -101063116 - MER65A-int LTR ERV1 -3364 1507 612 2196 112 0 3 chr1 141601237 141601531 -101062822 + AluSg SINE Alu 1 293 -17 9145 183 55 72 chr1 141601531 141602143 -101062210 - MER65A-int LTR ERV1 -4259 612 175 2144 107 30 3 chr1 141602143 141602443 -101061910 + AluSc SINE Alu 1 308 -1 9145 183 55 72 chr1 141602443 141602611 -101061742 - MER65A-int LTR ERV1 -4696 175 6 297 45 0 45 chr1 141602612 141602656 -101061697 - MER65A LTR ERV1 0 445 404 333 163 0 35 chr1 141604349 141604435 -101059918 + GA-rich Low_complexity Low_complexity 2 84 0 1459 177 33 50 chr1 141604459 141604758 -101059595 + AluJo SINE Alu 1 294 -8 2285 128 48 35 chr1 141604767 141605138 -101059215 - MER65A LTR ERV1 -41 404 26 2447 70 0 7 chr1 141605138 141605439 -101058914 - AluSc SINE Alu -10 299 1 2285 128 48 35 chr1 141605439 141605466 -101058887 - MER65A LTR ERV1 -419 26 1 890 154 0 0 chr1 141605866 141606002 -101058351 + FAM SINE Alu 38 173 -12 2386 103 0 3 chr1 141606024 141606334 -101058019 + AluSg SINE Alu 1 309 -1 378 265 133 19 chr1 141606775 141607039 -101057314 - L1M4 LINE L1 -2666 3480 3187 342 0 0 0 chr1 141607050 141607088 -101057265 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 29 0 0 chr1 141607100 141607134 -101057219 + AT_rich Low_complexity Low_complexity 1 34 0 855 267 170 24 chr1 141607338 141607679 -101056674 - MLT1K LTR MaLR -2 586 196 247 283 0 0 chr1 141607705 141607758 -101056595 - MLT1K LTR MaLR -463 125 73 1101 147 37 31 chr1 141608171 141608362 -101055991 - MER3 DNA MER1_type -17 192 1 213 39 0 0 chr1 141609034 141609060 -101055293 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 411 201 40 168 chr1 141609186 141609245 -101055108 + L1ME LINE L1 5555 5620 -501 2040 119 0 3 chr1 141609245 141609530 -101054823 + AluJo SINE Alu 15 298 -14 411 201 40 168 chr1 141609530 141609771 -101054582 + L1ME LINE L1 5620 5819 -302 1353 243 96 35 chr1 141609879 141610609 -101053744 - L1ME3 LINE L1 -302 5860 5087 1936 139 4 4 chr1 141611305 141611614 -101052739 + AluSx SINE Alu 1 309 0 1821 189 71 71 chr1 141611983 141612448 -101051905 - MLT1C LTR MaLR 0 467 3 3854 186 39 57 chr1 141612484 141613471 -101050882 - LTR5 LTR ERVK 0 969 1 394 179 26 0 chr1 141613567 141613645 -101050708 - MER116 DNA Mariner 0 80 1 2142 151 0 0 chr1 141614625 141614937 -101049416 - AluJb SINE Alu 0 312 1 2564 208 30 24 chr1 141615570 141616205 -101048148 + L1MB5 LINE L1 3668 4306 -1840 2598 60 0 0 chr1 141616212 141616511 -101047842 + AluY SINE Alu 1 299 -12 3438 175 82 65 chr1 141616516 141616819 -101047534 + L1MB5 LINE L1 5163 5459 -715 1577 101 0 19 chr1 141616819 141617052 -101047301 - AluSq SINE Alu 0 310 82 3438 175 82 65 chr1 141617052 141617524 -101046829 + L1MB5 LINE L1 5459 5961 -213 2268 131 21 16 chr1 141617524 141617897 -101046456 + THE1C LTR MaLR 1 375 0 3438 175 82 65 chr1 141617897 141618077 -101046276 + L1MB5 LINE L1 5961 6136 -38 1901 174 0 16 chr1 141618078 141618431 -101045922 + AluJo SINE Alu 1 348 0 3457 152 61 2 chr1 141618431 141619056 -101045297 + L1MB4 LINE L1 5512 6173 -7 473 139 0 0 chr1 141619073 141619159 -101045194 + L1MB8 LINE L1 6093 6178 0 473 165 25 91 chr1 141619166 141619192 -101045161 + Charlie7 DNA MER1_type 430 456 -2156 2267 106 3 0 chr1 141619192 141619485 -101044868 + AluSx SINE Alu 1 294 -18 473 165 25 91 chr1 141619485 141619579 -101044774 + Charlie7 DNA MER1_type 456 542 -2070 2561 46 0 10 chr1 141619648 141619953 -101044400 + AluY SINE Alu 1 302 -9 240 35 0 0 chr1 141620290 141620319 -101044034 + (TATG)n Simple_repeat Simple_repeat 2 30 0 988 121 0 0 chr1 141620320 141620452 -101043901 - AluJb SINE Alu -25 287 156 321 130 0 0 chr1 141620453 141620499 -101043854 + FLAM SINE Alu 59 104 -29 234 262 206 8 chr1 141621707 141621833 -101042520 - MIR SINE MIR -26 236 86 326 219 0 0 chr1 141621833 141621897 -101042456 - MIR SINE MIR -83 179 116 1670 165 0 4 chr1 141622161 141622422 -101041931 + AluJo SINE Alu 42 301 -11 296 262 93 9 chr1 141623216 141623323 -101041030 + MLT1K LTR MaLR 147 262 -326 217 326 61 0 chr1 141623389 141623487 -101040866 + MIR3 SINE MIR 78 181 -27 22 56 0 0 chr1 141623720 141623756 -101040597 + AT_rich Low_complexity Low_complexity 1 36 0 858 85 0 47 chr1 141623795 141623924 -101040429 - AluJo SINE Alu -178 134 12 329 280 6 0 chr1 141624151 141624308 -101040045 + (TG)n Simple_repeat Simple_repeat 1 158 0 633 220 96 23 chr1 141626516 141626693 -101037660 + Charlie8 DNA MER1_type 13 202 -2215 805 258 19 33 chr1 141627409 141627622 -101036731 - MER63A DNA MER1_type 0 210 1 317 226 81 8 chr1 141628437 141628561 -101035792 + HAL1 LINE L1 2040 2172 -335 2169 126 0 3 chr1 141628706 141629008 -101035345 - AluJo SINE Alu -11 301 1 2308 102 3 0 chr1 141629020 141629314 -101035039 - AluSp SINE Alu -18 295 1 2995 92 114 101 chr1 141629590 141630177 -101034176 - LTR61 LTR ERV1 0 595 1 2141 120 20 0 chr1 141630301 141630601 -101033752 + AluSq SINE Alu 1 306 -7 305 111 0 0 chr1 141630859 141630904 -101033449 - Alu SINE Alu -251 51 7 2253 76 47 27 chr1 141631288 141631589 -101032764 + AluSq SINE Alu 1 307 -6 287 309 34 58 chr1 141632209 141632416 -101031937 + L2 LINE L2 1798 1999 -1315 252 336 55 0 chr1 141632427 141632537 -101031816 + L2 LINE L2 3157 3272 0 183 336 90 57 chr1 141634369 141634491 -101029862 - MIR3 SINE MIR -68 140 15 337 221 42 42 chr1 141635507 141635602 -101028751 + L1MB5 LINE L1 6071 6165 -9 229 333 101 32 chr1 141636041 141636230 -101028123 - MIR SINE MIR -33 229 28 514 286 0 7 chr1 141636505 141636652 -101027701 - MIR SINE MIR -21 241 96 180 248 124 38 chr1 141636851 141636956 -101027397 + L2 LINE L2 3199 3312 -1 21 0 0 0 chr1 141638243 141638264 -101026089 + AT_rich Low_complexity Low_complexity 1 21 0 220 295 26 13 chr1 141639177 141639255 -101025098 - MIR3 SINE MIR -48 160 82 192 264 139 39 chr1 141639358 141639487 -101024866 - MIR SINE MIR -13 249 108 300 370 50 0 chr1 141641071 141641190 -101023163 + L2 LINE L2 3148 3272 0 180 328 149 15 chr1 141641465 141641599 -101022754 + L2 LINE L2 3149 3300 -13 237 294 65 29 chr1 141642217 141642387 -101021966 - MIR3 SINE MIR -3 205 30 571 219 28 169 chr1 141643096 141643340 -101021013 + MLT1E2-int LTR MaLR 986 1263 -472 1991 142 10 7 chr1 141643340 141643636 -101020717 + AluSx SINE Alu 1 297 -15 571 219 28 169 chr1 141643636 141643850 -101020503 + MLT1E2-int LTR MaLR 1263 1735 0 235 236 36 0 chr1 141643904 141643959 -101020394 + MLT1E2 LTR MaLR 89 145 -509 2000 112 196 0 chr1 141643977 141644335 -101020018 + MSTA LTR MaLR 1 428 0 1142 259 131 9 chr1 141644349 141644778 -101019575 + MLT1E2 LTR MaLR 143 623 -3 2020 141 0 3 chr1 141644799 141645090 -101019263 - AluSg1 SINE Alu -19 290 1 2300 100 3 3 chr1 141645333 141645632 -101018721 + AluSp SINE Alu 1 299 -14 340 331 25 32 chr1 141645960 141646117 -101018236 + L1MB8 LINE L1 5998 6153 -25 1218 233 93 5 chr1 141646125 141646503 -101017850 + L1MC2 LINE L1 19 429 -5997 5400 177 32 19 chr1 141646504 141646826 -101017527 + L1MC2 LINE L1 4992 5309 -1315 2350 99 13 0 chr1 141646826 141647129 -101017224 + AluSg SINE Alu 1 307 -3 5400 177 32 19 chr1 141647129 141648421 -101015932 + L1MC2 LINE L1 5309 6622 -2 350 157 60 22 chr1 141648868 141649002 -101015351 + GA-rich Low_complexity Low_complexity 2 140 0 287 246 0 14 chr1 141649030 141649099 -101015254 - tRNA-Asn-AAC tRNA tRNA -9 68 1 1101 165 0 0 chr1 141649370 141649534 -101014819 - AluJb SINE Alu -16 296 133 288 327 55 0 chr1 141649662 141649772 -101014581 + L2 LINE L2 3198 3313 0 246 215 224 19 chr1 141650054 141650161 -101014192 + L1ME4a LINE L1 5988 6116 -5 236 346 56 9 chr1 141650179 141650286 -101014067 + L2 LINE L2 2738 2849 -465 475 313 61 72 chr1 141650417 141650695 -101013658 + L2 LINE L2 2994 3268 -4 349 197 0 53 chr1 141650696 141650772 -101013581 + Tigger5 DNA MER2_type 1 72 -2251 438 203 0 0 chr1 141650828 141650907 -101013446 + Tigger5 DNA MER2_type 2245 2323 0 243 0 0 0 chr1 141650960 141650987 -101013366 + (TA)n Simple_repeat Simple_repeat 2 28 0 383 293 17 25 chr1 141650987 141651109 -101013244 - MIR SINE MIR -64 144 30 268 311 67 52 chr1 141651575 141651710 -101012643 - L2 LINE L2 -126 3146 3010 228 310 35 53 chr1 141651790 141651903 -101012450 + L2 LINE L2 3139 3249 -23 346 301 142 23 chr1 141653085 141653261 -101011092 + MIR SINE MIR 14 210 -52 251 27 0 27 chr1 141653416 141653453 -101010900 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2135 95 18 0 chr1 141653457 141653730 -101010623 - AluSx SINE Alu -34 278 1 207 0 0 0 chr1 141654001 141654024 -101010329 + (TA)n Simple_repeat Simple_repeat 1 23 0 372 229 0 36 chr1 141654804 141654911 -101009442 - MIR SINE MIR -102 106 5 483 343 48 28 chr1 141654978 141655226 -101009127 + L2 LINE L2 2827 3079 -193 2280 169 45 17 chr1 141655334 141655797 -101008556 + MER66B LTR ERV1 1 476 -10 383 277 76 0 chr1 141655798 141655917 -101008436 + L2 LINE L2 3178 3305 -8 274 278 26 87 chr1 141656252 141656367 -101007986 - MIR3 SINE MIR -24 184 77 249 275 34 51 chr1 141656659 141656837 -101007516 + L1ME LINE L1 5639 5813 -308 561 246 92 86 chr1 141657333 141657689 -101006664 - MLT1J2 LTR MaLR -69 381 1 2534 58 3 10 chr1 141657849 141658162 -101006191 - AluY SINE Alu 0 311 1 218 147 0 0 chr1 141659396 141659430 -101004923 + MIR SINE MIR 118 151 -111 325 294 91 21 chr1 141661436 141661579 -101002774 + MIR SINE MIR 20 172 -90 355 333 33 13 chr1 141661654 141661807 -101002546 - MIR3 SINE MIR -49 159 4 298 317 0 0 chr1 141662630 141662712 -101001641 - MIR SINE MIR -129 133 52 2194 113 10 3 chr1 141662971 141663273 -101001080 - AluSx SINE Alu -8 304 1 490 36 64 36 chr1 141664873 141665013 -100999340 + (CCTG)n Simple_repeat Simple_repeat 1 144 0 348 315 65 96 chr1 141665196 141665625 -100998728 - L2 LINE L2 -15 3257 2842 2332 66 0 72 chr1 141666160 141666480 -100997873 + AluSp SINE Alu 1 297 -16 256 329 0 12 chr1 141666512 141666597 -100997756 + GA-rich Low_complexity Low_complexity 4 87 0 920 107 23 8 chr1 141666775 141666906 -100997447 + FLAM_C SINE Alu 1 133 -10 299 327 93 6 chr1 141666938 141667100 -100997253 - L2 LINE L2 -1372 1942 1767 257 314 36 44 chr1 141667256 141667393 -100996960 - L2 LINE L2 -1845 1469 1334 278 345 96 10 chr1 141667630 141667827 -100996526 - L2 LINE L2 -2803 511 298 760 238 213 40 chr1 141667872 141668200 -100996153 - MLT1J1 LTR MaLR -2 444 60 1724 77 0 43 chr1 141668201 141668434 -100995919 + AluSg/x SINE Alu 83 305 -5 2434 194 53 43 chr1 141668473 141668636 -100995717 - L1MC4 LINE L1 -298 7744 7584 1885 169 0 16 chr1 141668636 141668943 -100995410 - AluJo SINE Alu -1 311 10 2434 194 53 43 chr1 141668943 141669404 -100994949 - L1MC4 LINE L1 -458 7584 7114 2346 115 0 6 chr1 141669429 141669742 -100994611 + AluSx SINE Alu 1 311 -1 202 261 0 0 chr1 141670359 141670372 -100993981 + GA-rich Low_complexity Low_complexity 2 14 -33 803 71 0 0 chr1 141670372 141670471 -100993882 + HY3 scRNA scRNA 1 99 -2 202 261 0 0 chr1 141670471 141670503 -100993850 + GA-rich Low_complexity Low_complexity 13 47 0 305 212 59 0 chr1 141670513 141670598 -100993755 + MLT1L LTR MaLR 495 584 -31 560 276 92 0 chr1 141670624 141670787 -100993566 - MIR SINE MIR -48 214 37 261 180 131 16 chr1 141671072 141671133 -100993220 + L2 LINE L2 3201 3268 -4 219 259 75 45 chr1 141671160 141671376 -100992977 - L2 LINE L2 -1 3271 3041 1679 139 90 28 chr1 141723694 141723982 -100940371 - AluJb SINE Alu -6 306 1 2103 96 57 0 chr1 141724035 141724315 -100940038 - AluSx SINE Alu -16 296 1 204 40 0 0 chr1 141725118 141725143 -100939210 + (TG)n Simple_repeat Simple_repeat 2 26 0 191 275 8 137 chr1 141726601 141726732 -100937621 - MIR SINE MIR -51 211 98 2033 151 0 13 chr1 141727851 141728156 -100936197 + AluSx SINE Alu 1 301 -11 639 122 0 0 chr1 141728236 141728326 -100936027 + AluS SINE Alu 2 91 -222 2325 101 7 0 chr1 141728424 141728722 -100935631 - AluSx SINE Alu -12 300 1 600 270 86 5 chr1 141728762 141729046 -100935307 + L1MC4a LINE L1 5292 5598 -2210 541 281 259 38 chr1 141729047 141729417 -100934936 + L1MC4a LINE L1 5523 5974 -1834 218 327 47 56 chr1 141729662 141729769 -100934584 - L2 LINE L2 -3 3310 3205 523 206 175 0 chr1 141732157 141732283 -100932070 + FRAM SINE Alu 17 164 -12 309 379 8 8 chr1 141732663 141732795 -100931558 + MIR3 SINE MIR 73 204 -4 243 316 140 9 chr1 141732929 141733043 -100931310 + L2 LINE L2 3182 3310 -3 620 172 22 37 chr1 141733193 141733327 -100931026 + MER2 DNA MER2_type 1 132 -213 1655 151 9 79 chr1 141733327 141733644 -100930709 - AluJo SINE Alu -17 295 1 2322 87 0 0 chr1 141733816 141734102 -100930251 + AluSg SINE Alu 1 286 -24 1273 173 95 0 chr1 141734761 141735004 -100929349 + Tigger7 DNA MER2_type 2 267 -2220 345 176 122 0 chr1 141735011 141735085 -100929268 + Tigger7 DNA MER2_type 2405 2487 0 210 256 212 22 chr1 141735670 141735807 -100928546 + MIR SINE MIR 87 249 -13 2638 218 209 23 chr1 141735860 141736101 -100928252 - L2 LINE L2 -620 2694 2499 2148 114 10 7 chr1 141736101 141736399 -100927954 + AluJb SINE Alu 1 299 -13 2638 218 209 23 chr1 141736399 141737032 -100927321 - L2 LINE L2 -815 2499 1657 1205 188 3 43 chr1 141737162 141737466 -100926887 - AluY SINE Alu -9 292 1 1032 184 16 11 chr1 141740129 141740314 -100924039 + AluJb SINE Alu 115 300 -12 2122 123 3 3 chr1 141740578 141740870 -100923483 - AluSx SINE Alu -20 292 1 243 227 80 67 chr1 141741029 141741104 -100923249 - MIR SINE MIR -106 102 27 361 287 58 35 chr1 141741631 141741805 -100922548 + MIR3 SINE MIR 23 200 -8 183 184 0 0 chr1 141742683 141742721 -100921632 + (CA)n Simple_repeat Simple_repeat 1 38 0 183 162 0 0 chr1 141744462 141744499 -100919854 + (CAG)n Simple_repeat Simple_repeat 3 39 0 594 291 99 31 chr1 141745575 141745815 -100918538 - MIR SINE MIR -5 257 6 553 188 169 56 chr1 141747175 141747269 -100917084 - MER5B DNA MER1_type 0 178 96 2396 138 0 0 chr1 141747269 141747631 -100916722 - MER47A DNA MER2_type -4 362 1 553 188 169 56 chr1 141747631 141747696 -100916657 - MER5B DNA MER1_type -82 96 1 200 383 148 27 chr1 141748733 141748882 -100915471 - L2 LINE L2 0 3272 3106 2048 100 0 4 chr1 141748997 141749267 -100915086 + AluSq SINE Alu 1 269 -44 285 316 18 26 chr1 141749369 141749483 -100914870 - L2 LINE L2 -225 3047 2935 323 250 67 48 chr1 141749904 141750008 -100914345 - L2 LINE L2 -18 3295 3190 947 265 165 44 chr1 141750064 141750280 -100914073 + L2 LINE L2 2505 2693 -620 2254 90 23 7 chr1 141750280 141750606 -100913747 - AluSx SINE Alu 0 312 1 947 265 165 44 chr1 141750606 141751115 -100913238 + L2 LINE L2 2693 3312 -1 325 317 126 52 chr1 141751472 141751781 -100912572 - L2 LINE L2 -14 3258 2927 211 268 0 0 chr1 141754234 141754275 -100910078 + polypurine Low_complexity Low_complexity 2 42 0 314 78 0 20 chr1 141754308 141754359 -100909994 + (CAG)n Simple_repeat Simple_repeat 3 52 0 1400 176 67 29 chr1 141761018 141761394 -100902959 - Charlie5 DNA MER1_type 0 2624 2235 472 205 41 8 chr1 141761398 141761520 -100902833 - MER3 DNA MER1_type -48 161 36 554 278 137 18 chr1 141761966 141762193 -100902160 - MIR SINE MIR -6 256 3 2263 100 3 3 chr1 141764141 141764430 -100899923 + AluSx SINE Alu 12 300 -12 2020 142 3 0 chr1 141764490 141764785 -100899568 + AluJb SINE Alu 1 296 -16 266 140 0 0 chr1 141765458 141765508 -100898845 + L1MEc LINE L1 1029 1078 -5318 * 1550 174 63 30 chr1 141765506 141765840 -100898513 + L1ME1 LINE L1 16 360 -6180 1855 163 175 36 chr1 141765841 141766259 -100898094 + MLT2B1 LTR ERVL 35 510 -10 6393 193 102 59 chr1 141766288 141767372 -100896981 + L1ME1 LINE L1 510 1546 -4994 1438 141 45 141 chr1 141767372 141767706 -100896647 + AluJb SINE Alu 1 302 0 6393 193 102 59 chr1 141767706 141768443 -100895910 + L1ME1 LINE L1 1546 2435 -4105 661 164 29 0 chr1 141768443 141768547 -100895806 + U6 snRNA snRNA 1 107 0 6393 193 102 59 chr1 141768547 141768834 -100895519 + L1ME1 LINE L1 2435 2708 -3832 1109 145 12 0 chr1 141768834 141769000 -100895353 + AluSg/x SINE Alu 131 298 -14 1969 146 3 3 chr1 141769007 141769294 -100895059 + AluSx SINE Alu 9 295 -17 2285 218 28 8 chr1 141769294 141769819 -100894534 + L1ME1 LINE L1 2701 3241 -3299 2098 120 13 13 chr1 141769819 141770127 -100894226 + AluSq SINE Alu 1 308 -5 2285 218 28 8 chr1 141770127 141770202 -100894151 + L1ME1 LINE L1 3241 3313 -3227 354 228 0 0 chr1 141770205 141770301 -100894052 + FRAM/FAM SINE Alu 13 79 -87 3016 238 54 30 chr1 141770314 141771453 -100892900 + L1ME1 LINE L1 3291 4456 -2084 1326 216 43 34 chr1 141771536 141771980 -100892373 + L1M4 LINE L1 4877 5324 -822 2874 221 98 14 chr1 141772013 141772051 -100892302 + L1ME1 LINE L1 5656 5689 -871 1756 174 7 0 chr1 141772051 141772338 -100892015 + AluJo SINE Alu 21 309 -3 2874 221 98 14 chr1 141772338 141772993 -100891360 + L1ME1 LINE L1 5689 6427 -133 862 221 34 24 chr1 141772993 141773201 -100891152 + MER63A DNA MER1_type 1 210 0 2874 221 98 14 chr1 141773201 141773345 -100891008 + L1ME1 LINE L1 6427 6557 -3 416 289 35 35 chr1 141773374 141773449 -100890904 - HERV16 LTR ERVL -3255 1741 1667 180 0 0 0 chr1 141773449 141773469 -100890884 + (TTG)n Simple_repeat Simple_repeat 2 21 0 416 289 35 35 chr1 141773469 141773566 -100890787 - HERV16 LTR ERVL -3328 1668 1569 358 268 173 0 chr1 141773633 141773760 -100890593 - HERV16 LTR ERVL -3600 1396 1248 925 122 0 23 chr1 141773900 141774031 -100890322 - FLAM_C SINE Alu -15 128 1 2667 291 87 23 chr1 141774032 141774153 -100890200 - HERV16 LTR ERVL -3822 1174 1062 3602 118 47 32 chr1 141774153 141774755 -100889598 - LTR36 LTR ERV1 0 611 1 2667 291 87 23 chr1 141774755 141774832 -100889521 - HERV16 LTR ERVL -3934 1062 991 2278 96 7 16 chr1 141774832 141775135 -100889218 + AluSq SINE Alu 1 300 -13 2667 291 87 23 chr1 141775135 141776038 -100888315 - HERV16 LTR ERVL -4005 991 1 401 298 52 44 chr1 141776041 141776345 -100888008 - LTR16A LTR ERVL -5 445 86 2418 108 0 3 chr1 141776504 141776818 -100887535 - AluSp SINE Alu 0 313 1 2369 101 0 0 chr1 141777072 141777370 -100886983 + AluSc SINE Alu 1 298 -11 2615 120 51 5 chr1 141777394 141777803 -100886550 - MSTA LTR MaLR 0 428 1 7472 181 20 8 chr1 141777803 141779432 -100884921 - MSTA-int LTR MaLR 0 1651 2 2365 118 123 28 chr1 141779433 141779475 -100884878 - MSTA LTR MaLR 0 428 391 2325 109 0 3 chr1 141779475 141779777 -100884576 + AluSg SINE Alu 1 301 -9 2365 118 123 28 chr1 141779777 141780125 -100884228 - MSTA LTR MaLR -37 391 1 249 108 0 0 chr1 141780306 141780343 -100884010 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 1885 151 39 0 chr1 141780395 141780680 -100883673 + AluSx SINE Alu 5 300 -12 248 208 271 0 chr1 141781008 141781104 -100883249 - MIR SINE MIR -77 185 64 321 291 98 67 chr1 141781256 141781510 -100882843 + L2 LINE L2 1686 1947 -1367 232 365 26 16 chr1 141781520 141781712 -100882641 + L2 LINE L2 2379 2572 -742 1063 94 114 0 chr1 141781793 141781942 -100882411 + AluSg SINE Alu 62 227 -83 1993 121 4 11 chr1 141781997 141782270 -100882083 - AluSx SINE Alu -41 271 1 779 195 75 25 chr1 141782293 141782452 -100881901 + FRAM SINE Alu 8 174 -2 491 244 119 38 chr1 141782667 141782914 -100881439 + MLT1L LTR MaLR 242 611 -4 219 266 0 16 chr1 141782932 141782996 -100881357 - L2 LINE L2 -669 2645 2583 1636 153 33 18 chr1 141783026 141783301 -100881052 - AluJb SINE Alu -33 279 1 329 340 98 0 chr1 141783612 141783765 -100880588 - MIR SINE MIR -48 214 47 693 264 142 80 chr1 141783775 141783962 -100880391 - MLT1L LTR MaLR -58 557 383 2224 114 3 0 chr1 141783962 141784259 -100880094 + AluSx SINE Alu 1 298 -14 693 264 142 80 chr1 141784259 141784594 -100879759 - MLT1L LTR MaLR -232 383 3 2132 79 50 0 chr1 141784670 141784949 -100879404 - AluSg SINE Alu -17 293 1 425 283 40 53 chr1 141785128 141785280 -100879073 - L2 LINE L2 -2 3270 3121 225 257 147 9 chr1 141785287 141785396 -100878957 + L2 LINE L2 3182 3305 -8 836 191 13 0 chr1 141788094 141788246 -100876107 + MER5B DNA MER1_type 25 178 0 1526 142 112 4 chr1 141788881 141789149 -100875204 - AluJb SINE Alu -15 297 1 476 296 93 12 chr1 141789448 141789620 -100874733 - MIR SINE MIR -56 206 21 310 266 14 58 chr1 141789962 141790101 -100874252 - L2 LINE L2 -229 3043 2911 941 240 76 0 chr1 141790399 141790674 -100873679 + L1ME3A LINE L1 5847 6142 -28 2085 97 0 4 chr1 141790769 141791047 -100873306 + AluSg SINE Alu 24 300 -10 2303 76 0 30 chr1 141791047 141791351 -100873002 + AluY SINE Alu 1 295 -16 2234 101 0 19 chr1 141792434 141792741 -100871612 - AluSx SINE Alu -11 301 1 2345 91 3 0 chr1 141792744 141793042 -100871311 - AluSp SINE Alu -14 299 1 349 283 158 17 chr1 141793151 141793271 -100871082 + MIR SINE MIR 50 186 -76 455 339 73 38 chr1 141793931 141794295 -100870058 + L1M4 LINE L1 4457 4848 -1298 180 0 0 0 chr1 141794295 141794315 -100870038 + (CA)n Simple_repeat Simple_repeat 2 21 0 455 339 73 38 chr1 141794315 141794501 -100869852 + L1M4 LINE L1 4848 5026 -1120 2146 137 0 0 chr1 141794643 141794950 -100869403 + AluJb SINE Alu 1 307 -5 23 0 0 0 chr1 141794961 141794984 -100869369 + AT_rich Low_complexity Low_complexity 1 23 0 1769 156 46 20 chr1 141795132 141795492 -100868861 + AluJo SINE Alu 3 370 0 506 192 0 48 chr1 141795572 141795701 -100868652 + FLAM_A SINE Alu 16 139 0 1212 273 86 42 chr1 141795915 141796264 -100868089 + HAL1 LINE L1 1 374 -2133 2422 78 0 3 chr1 141796264 141796560 -100867793 + AluSc SINE Alu 2 296 -13 1212 273 86 42 chr1 141796560 141796642 -100867711 + HAL1 LINE L1 374 451 -2056 681 167 0 19 chr1 141796643 141796751 -100867602 + AluJb SINE Alu 2 107 -205 6774 178 30 29 chr1 141796798 141799717 -100864636 + L1MA2 LINE L1 3153 6067 -1656 1764 158 13 7 chr1 141799717 141800020 -100864333 + AluJo SINE Alu 5 309 -3 6774 178 30 29 chr1 141800020 141800612 -100863741 + L1MA2 LINE L1 6067 6657 -1066 6774 88 7 2 chr1 141800612 141801500 -100862853 + L1MA2 LINE L1 6832 7723 0 6774 178 30 29 chr1 141801500 141801539 -100862814 + L1MA2 LINE L1 6657 7723 0 1927 244 80 34 chr1 141801536 141802167 -100862186 + HAL1 LINE L1 1700 2373 -134 * 212 59 29 0 chr1 141802167 141802201 -100862152 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1927 244 80 34 chr1 141802201 141802330 -100862023 + HAL1 LINE L1 2373 2495 -12 181 300 114 0 chr1 141802487 141802557 -100861796 - MIR SINE MIR -65 143 66 515 136 0 12 chr1 141803026 141803107 -100861246 + MSTB1 LTR MaLR 1 80 -352 * 767 120 105 125 chr1 141803101 141803301 -100861052 + MSTB1 LTR MaLR 237 432 0 2849 3 0 7 chr1 141803401 141803709 -100860644 - AluYa5 SINE Alu -5 306 1 1665 167 18 4 chr1 141803978 141804259 -100860094 - AluJo SINE Alu -3 309 25 24 0 0 0 chr1 141804729 141804753 -100859600 + AT_rich Low_complexity Low_complexity 1 24 0 203 243 0 0 chr1 141805474 141805511 -100858842 + (CATG)n Simple_repeat Simple_repeat 3 39 0 999 213 19 52 chr1 141806836 141807151 -100857202 + L1MC5 LINE L1 6674 7075 -967 336 181 44 44 chr1 141807153 141807313 -100857040 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 577 250 31 80 chr1 141807313 141807537 -100856816 + L1MC5 LINE L1 7009 7221 -740 1128 269 83 33 chr1 141807567 141807946 -100856407 + L1MC5 LINE L1 7262 7580 -381 2422 74 3 0 chr1 141807946 141808242 -100856111 + AluY SINE Alu 1 297 -14 1128 269 83 33 chr1 141808242 141808565 -100855788 + L1MC5 LINE L1 7580 7885 -76 2266 86 0 10 chr1 141808612 141808904 -100855449 + AluSc SINE Alu 1 289 -20 379 184 66 0 chr1 141808992 141809068 -100855285 - MIR SINE MIR 0 262 182 368 320 31 39 chr1 141810059 141810187 -100854166 - L2 LINE L2 0 3272 3146 2132 107 4 0 chr1 141811848 141812158 -100852195 + AluSx SINE Alu 1 311 0 2235 56 0 8 chr1 141812434 141812701 -100851652 + AluSc SINE Alu 24 288 -21 1948 97 0 16 chr1 141813371 141813629 -100850724 - AluSx SINE Alu -11 301 48 646 267 63 28 chr1 141813688 141813922 -100850431 - MARNA DNA Mariner -198 388 143 1640 154 27 24 chr1 141813922 141814215 -100850138 + AluJb SINE Alu 1 294 -18 646 267 63 28 chr1 141814215 141814235 -100850118 - MARNA DNA Mariner -443 143 125 28 79 0 0 chr1 141814417 141814480 -100849873 + AT_rich Low_complexity Low_complexity 1 63 0 740 270 124 45 chr1 141814483 141815151 -100849202 - L1ME3A LINE L1 -233 5941 5032 2394 70 3 3 chr1 141815151 141815452 -100848901 - AluY SINE Alu -10 301 1 740 270 124 45 chr1 141815452 141815551 -100848802 - L1ME3A LINE L1 -1142 5032 4942 2163 279 53 30 chr1 141815648 141816494 -100847859 + L1MEc LINE L1 77 942 -5454 1077 208 148 27 chr1 141816518 141816816 -100847537 + MSTD LTR MaLR 63 396 0 2374 224 96 99 chr1 141816862 141817264 -100847089 + L1MEc LINE L1 653 1055 -5886 2386 96 0 0 chr1 141817264 141817567 -100846786 + AluSc SINE Alu 1 303 -6 1757 187 3 10 chr1 141817574 141817879 -100846474 + AluJb SINE Alu 1 303 -9 2374 224 96 99 chr1 141817879 141818169 -100846184 + L1MEc LINE L1 1061 1350 -5591 2311 103 7 0 chr1 141818169 141818471 -100845882 + AluSp SINE Alu 1 304 -9 2374 224 96 99 chr1 141818471 141818684 -100845669 + L1MEc LINE L1 1350 1562 -5379 2248 101 0 16 chr1 141818684 141818992 -100845361 + AluSg SINE Alu 1 303 -7 2374 224 96 99 chr1 141818992 141819159 -100845194 + L1MEc LINE L1 1562 1728 -5213 9516 30 8 210 chr1 141819159 141820896 -100843457 + SVA Other Other 1 1386 0 2374 224 96 99 chr1 141820896 141821167 -100843186 + L1MEc LINE L1 1728 1998 -4943 1560 175 3 54 chr1 141821167 141821306 -100843047 + AluJo SINE Alu 1 119 -193 1968 163 0 0 chr1 141821306 141821613 -100842740 + AluSx SINE Alu 1 307 -5 1560 175 3 54 chr1 141821613 141821770 -100842583 + AluJo SINE Alu 119 282 -30 2374 224 96 99 chr1 141821770 141821897 -100842456 + L1MEc LINE L1 1998 2124 -4817 1636 160 3 21 chr1 141821897 141822179 -100842174 - AluJo SINE Alu -19 293 17 2374 224 96 99 chr1 141822179 141822234 -100842119 + L1MEc LINE L1 2124 2178 -4763 2367 97 3 0 chr1 141822234 141822542 -100841811 + AluSg SINE Alu 1 309 -1 2374 224 96 99 chr1 141822542 141822767 -100841586 + L1MEc LINE L1 2178 2420 -4521 2205 102 3 0 chr1 141822775 141823081 -100841272 + AluSp SINE Alu 1 307 0 1999 141 3 10 chr1 141823138 141823451 -100840902 + AluSx SINE Alu 2 312 0 538 172 9 226 chr1 141823686 141823907 -100840446 - LTR49-int LTR ERV1 -2884 3447 3275 567 145 51 94 chr1 141823967 141824044 -100840309 - LTR49-int LTR ERV1 -3059 3272 3202 2165 134 3 6 chr1 141824044 141824358 -100839995 + AluSq SINE Alu 1 313 0 567 145 51 94 chr1 141824358 141824418 -100839935 - LTR49-int LTR ERV1 -3129 3202 3141 503 213 103 7 chr1 141824438 141824574 -100839779 + L1MEc LINE L1 2575 2723 -4399 261 75 0 0 chr1 141824577 141824617 -100839736 + (TG)n Simple_repeat Simple_repeat 2 41 0 321 245 11 11 chr1 141824668 141824762 -100839591 + L1MCc LINE L1 3568 3661 -3280 324 155 52 26 chr1 141824788 141824904 -100839449 + (TA)n Simple_repeat Simple_repeat 1 119 0 1024 220 86 78 chr1 141824919 141825509 -100838844 + L1MEc LINE L1 2735 3302 -3639 1501 277 58 39 chr1 141825543 141826211 -100838142 + L1ME LINE L1 42 722 -5348 794 192 42 81 chr1 141826218 141826407 -100837946 + L1MB7 LINE L1 4781 4976 -1170 2030 98 50 4 chr1 141826407 141826684 -100837669 + AluSx SINE Alu 14 303 -9 794 192 42 81 chr1 141826684 141826709 -100837644 + L1MB7 LINE L1 4976 5000 -1146 189 0 0 0 chr1 141826709 141826730 -100837623 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 794 192 42 81 chr1 141826730 141826774 -100837579 + L1MB7 LINE L1 5000 5030 -1116 * 2818 139 57 16 chr1 141826757 141827253 -100837100 + L1MB7 LINE L1 5541 6056 -128 607 163 0 0 chr1 141827420 141827512 -100836841 - AluSg/x SINE Alu -7 302 211 342 153 59 82 chr1 141827512 141827534 -100836819 + L1MB8 LINE L1 6091 6112 -66 2252 115 3 0 chr1 141827534 141827838 -100836515 + AluSp SINE Alu 1 305 -8 342 153 59 82 chr1 141827838 141827900 -100836453 + L1MB8 LINE L1 6112 6173 -5 2168 103 0 0 chr1 141827901 141828229 -100836124 + AluSg SINE Alu 1 328 0 2231 95 3 3 chr1 141828230 141828515 -100835838 + AluSp SINE Alu 1 285 -28 770 122 0 0 chr1 141828417 141828515 -100835838 + AluSp/q SINE Alu 188 320 0 246 29 0 29 chr1 141828515 141828550 -100835803 + (TAAAA)n Simple_repeat Simple_repeat 2 75 0 1667 63 0 10 chr1 141828554 141828761 -100835592 + AluY SINE Alu 1 205 -106 285 217 48 48 chr1 141828890 141828973 -100835380 - MIR SINE MIR -110 152 70 561 234 72 51 chr1 141829484 141829603 -100834750 + MLT1E LTR MaLR 108 264 -362 2133 120 0 3 chr1 141829603 141829903 -100834450 + AluSg SINE Alu 1 299 -11 561 234 72 51 chr1 141829903 141829973 -100834380 + MLT1E LTR MaLR 264 331 -295 363 308 8 8 chr1 141830644 141830761 -100833592 - MIR SINE MIR -36 226 110 735 112 0 0 chr1 141830772 141830870 -100833483 + L1P LINE L1 1 98 -6048 * 3388 105 19 18 chr1 141830868 141831381 -100832972 + L1P LINE L1 847 1360 -4786 915 168 0 13 chr1 141831771 141831926 -100832427 - FAM SINE Alu -9 40 1 412 252 204 7 chr1 141832712 141832859 -100831494 + MER5B DNA MER1_type 2 177 -1 484 257 41 35 chr1 141832902 141833073 -100831280 + MIR SINE MIR 36 207 -55 281 296 58 47 chr1 141833177 141833349 -100831004 + MIR SINE MIR 40 213 -49 36 23 0 0 chr1 141833830 141833873 -100830480 + AT_rich Low_complexity Low_complexity 1 43 0 2093 118 0 56 chr1 141834027 141834349 -100830004 - AluSx SINE Alu -8 304 1 617 87 0 72 chr1 141834379 141834831 -100829522 + (TA)n Simple_repeat Simple_repeat 1 419 0 3901 206 38 14 chr1 141834831 141835736 -100828617 + L1ME1 LINE L1 5237 6161 -5 2172 115 10 22 chr1 141835761 141836075 -100828278 + AluSx SINE Alu 1 310 -2 2451 59 0 43 chr1 141838959 141839282 -100825071 + AluY SINE Alu 2 310 -1 508 309 55 5 chr1 141839305 141839506 -100824847 + MIR SINE MIR 2 212 -50 216 0 0 0 chr1 141839745 141839769 -100824584 + (T)n Simple_repeat Simple_repeat 1 24 0 1780 164 3 26 chr1 141839829 141840139 -100824214 + AluJb SINE Alu 1 303 -9 578 298 128 9 chr1 141841016 141841234 -100823119 + MIR SINE MIR 16 259 -3 473 205 45 0 chr1 141841572 141841684 -100822669 + L1MC4 LINE L1 7925 8041 -1 2608 199 49 52 chr1 141842276 141843254 -100821099 + L1ME2 LINE L1 5461 6155 -9 1710 149 7 7 chr1 141842853 141843135 -100821218 + AluJb SINE Alu 17 298 -14 457 247 24 36 chr1 141843135 141843264 -100821089 + L1MA10 LINE L1 6197 6327 -7 2532 64 0 3 chr1 141843264 141843576 -100820777 + AluY SINE Alu 1 311 0 2360 82 7 0 chr1 141843982 141844273 -100820080 + AluSq SINE Alu 3 295 -18 1634 155 53 11 chr1 141844461 141844745 -100819608 + AluJb SINE Alu 1 296 -16 2500 48 3 0 chr1 141845393 141845684 -100818669 - AluY SINE Alu -19 292 1 33 25 0 0 chr1 141846012 141846052 -100818301 + AT_rich Low_complexity Low_complexity 1 40 0 388 261 15 30 chr1 141846084 141846218 -100818135 + L1ME LINE L1 5545 5676 -445 361 130 0 0 chr1 141846308 141846362 -100817991 - Alu SINE Alu -3 297 244 220 218 158 59 chr1 141846698 141846799 -100817554 - MIR SINE MIR -85 177 67 3638 112 37 96 chr1 141846848 141847278 -100817075 + Tigger3b DNA MER2_type 1 372 -2656 2233 115 0 10 chr1 141847278 141847591 -100816762 - AluSq SINE Alu -3 310 1 3638 112 37 96 chr1 141847591 141847891 -100816462 + Tigger3b DNA MER2_type 372 688 -543 1026 114 7 0 chr1 141847907 141848047 -100816306 + AluJo SINE Alu 1 141 -171 987 197 6 0 chr1 141848065 141848243 -100816110 + AluJb SINE Alu 115 293 -19 903 245 72 45 chr1 141848600 141848931 -100815422 + L1MC4a LINE L1 5591 5930 -1878 2462 93 0 0 chr1 141848942 141849254 -100815099 + AluSx SINE Alu 1 312 0 1064 134 43 0 chr1 141849254 141849418 -100814935 + AluSc SINE Alu 131 301 -8 305 233 110 31 chr1 141849458 141849621 -100814732 + L1MC4a LINE L1 6000 6175 -1633 479 325 104 54 chr1 141849829 141850095 -100814258 - L2 LINE L2 -213 3059 2808 2443 48 0 48 chr1 141850095 141850405 -100813948 + AluY SINE Alu 1 295 -16 479 325 104 54 chr1 141850405 141851120 -100813233 - L2 LINE L2 -464 2808 2029 218 271 21 73 chr1 141851257 141851353 -100813000 - MIR3 SINE MIR -112 96 6 251 331 54 31 chr1 141851448 141851578 -100812775 + L2 LINE L2 2920 3052 -220 2152 217 67 26 chr1 141851640 141852175 -100812178 + MLT1E LTR MaLR 31 587 -6 366 62 0 108 chr1 141852220 141852250 -100812103 - Alu SINE Alu 0 301 280 1924 99 38 76 chr1 141852250 141852564 -100811789 + AluSx SINE Alu 2 303 -9 366 62 0 108 chr1 141852564 141852598 -100811755 - Alu SINE Alu -21 280 244 181 311 84 50 chr1 141852638 141852757 -100811596 + L2 LINE L2 3183 3305 -8 200 338 15 0 chr1 141852784 141852852 -100811501 + MIR SINE MIR 163 231 -31 2145 107 27 10 chr1 141852856 141853154 -100811199 - AluSx SINE Alu -9 303 1 244 264 28 14 chr1 141853244 141853316 -100811037 - MIR SINE MIR -72 136 64 1662 185 27 7 chr1 141853360 141853658 -100810695 + AluJo SINE Alu 3 306 -6 378 216 91 0 chr1 141853889 141853977 -100810376 - MLT1K LTR MaLR -1 587 492 1757 172 0 4 chr1 141854022 141854301 -100810052 + AluJo SINE Alu 1 278 -34 2129 52 56 31 chr1 141854303 141854627 -100809726 - AluY SINE Alu 0 331 1 206 31 0 31 chr1 141854629 141854661 -100809692 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2247 109 0 0 chr1 141854661 141854946 -100809407 - AluSx SINE Alu -27 285 1 189 107 0 0 chr1 141854959 141854987 -100809366 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2390 93 3 0 chr1 141855293 141855595 -100808758 + AluSp SINE Alu 1 303 -10 733 209 85 98 chr1 141856004 141856116 -100808237 - MLT1L LTR MaLR -8 607 495 1945 141 3 3 chr1 141856116 141856413 -100807940 - AluJo SINE Alu -11 301 5 733 209 85 98 chr1 141856413 141856607 -100807746 - MLT1L LTR MaLR -120 495 305 6814 65 5 54 chr1 141856610 141858329 -100806024 - SVA Other Other -683 1384 23 1362 67 0 0 chr1 141858430 141858595 -100805758 + AluY SINE Alu 128 292 -19 315 214 71 0 chr1 141858797 141858881 -100805472 - L1MC4 LINE L1 -1339 6703 6614 302 273 0 20 chr1 141858865 141858955 -100805398 - L1MC4 LINE L1 -1339 6703 6614 * 771 126 0 0 chr1 141858955 141859058 -100805295 - U6 snRNA snRNA -4 103 1 4736 134 72 26 chr1 141859254 141860075 -100804278 + L1MC3 LINE L1 4989 5148 -998 2163 127 0 0 chr1 141860075 141860375 -100803978 + AluSx SINE Alu 1 300 -12 4736 134 72 26 chr1 141860375 141860644 -100803709 + L1MC3 LINE L1 5148 5403 -743 931 128 0 21 chr1 141860644 141860785 -100803568 + FLAM_C SINE Alu 1 138 -5 3371 182 61 10 chr1 141860795 141861483 -100802870 + L1MC3 LINE L1 6123 6845 -940 261 0 0 0 chr1 141861643 141861672 -100802681 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1611 91 5 14 chr1 141861672 141861892 -100802461 - AluSc SINE Alu -32 277 60 1317 171 0 133 chr1 141862224 141862570 -100801783 - AluJo SINE Alu -1 301 2 685 154 0 26 chr1 141862570 141862678 -100801675 - AluSc SINE Alu -13 296 190 934 129 14 0 chr1 141862678 141862817 -100801536 - AluSq/x SINE Alu -172 141 1 2266 120 3 0 chr1 141862839 141863147 -100801206 - AluSx SINE Alu -3 309 1 30 0 0 0 chr1 141863604 141863634 -100800719 + AT_rich Low_complexity Low_complexity 1 30 0 2176 129 0 0 chr1 141863640 141863935 -100800418 + AluSx SINE Alu 1 295 -17 222 37 0 0 chr1 141863935 141863962 -100800391 + (TA)n Simple_repeat Simple_repeat 1 27 0 1832 150 0 14 chr1 141864106 141864414 -100799939 + AluJo SINE Alu 1 304 0 1616 202 10 55 chr1 141864672 141864810 -100799543 + AluJb SINE Alu 1 144 -158 1876 140 19 32 chr1 141864810 141864934 -100799419 + AluSx SINE Alu 1 125 -187 2198 88 11 0 chr1 141864934 141865218 -100799135 + AluY SINE Alu 3 289 -22 1876 140 19 32 chr1 141865218 141865408 -100798945 + AluSx SINE Alu 125 311 -1 1616 202 10 55 chr1 141865408 141865576 -100798777 + AluJb SINE Alu 144 293 -9 28 29 0 0 chr1 141866607 141866642 -100797711 + AT_rich Low_complexity Low_complexity 1 35 0 2183 104 0 10 chr1 141867382 141867679 -100796674 + AluSg SINE Alu 1 294 -16 218 279 0 0 chr1 141868476 141868519 -100795834 + L2 LINE L2 3136 3178 -94 307 271 23 83 chr1 141868640 141868773 -100795580 - MER112 DNA MER1_type 0 260 136 1312 148 0 5 chr1 141868773 141868969 -100795384 + AluJb SINE Alu 1 195 -117 1554 139 17 4 chr1 141869022 141869259 -100795094 - AluJb SINE Alu -15 297 58 1575 124 9 0 chr1 141869360 141869578 -100794775 + AluSg/x SINE Alu 78 297 -15 1182 143 0 0 chr1 141869696 141869864 -100794489 - AluSg/x SINE Alu -11 299 132 2219 120 0 0 chr1 141869864 141870173 -100794180 - AluSq SINE Alu -4 309 1 1232 140 126 59 chr1 141871080 141871351 -100793002 + AluJo SINE Alu 15 303 -9 270 291 68 77 chr1 141871478 141871595 -100792758 - L2 LINE L2 -4 3268 3153 2241 80 0 17 chr1 141871646 141871966 -100792387 + AluSp SINE Alu 1 315 0 439 327 0 25 chr1 141872294 141872453 -100791900 + MER5A DNA MER1_type 35 189 0 191 114 29 0 chr1 141873850 141873885 -100790468 + GA-rich Low_complexity Low_complexity 3 38 0 24 67 0 0 chr1 141874438 141874483 -100789870 + AT_rich Low_complexity Low_complexity 1 45 0 2179 70 11 0 chr1 141874631 141874903 -100789450 + AluSx SINE Alu 24 298 -14 25 0 0 0 chr1 141875272 141875297 -100789056 + AT_rich Low_complexity Low_complexity 1 25 0 210 271 0 0 chr1 141876913 141876983 -100787370 + (CCG)n Simple_repeat Simple_repeat 1 70 0 516 301 31 25 chr1 141877902 141878098 -100786255 + L2 LINE L2 3117 3313 0 22 35 0 0 chr1 141878718 141878747 -100785606 + AT_rich Low_complexity Low_complexity 1 29 0 293 143 0 0 chr1 141878752 141878794 -100785559 - MER57A LTR ERV1 -67 336 295 819 115 0 0 chr1 141878817 141878930 -100785423 - AluSx SINE Alu -6 306 194 884 112 67 15 chr1 141878931 141879065 -100785288 - AluSx SINE Alu -171 141 1 1888 150 6 13 chr1 141879082 141879396 -100784957 - AluSx SINE Alu 0 312 1 748 122 0 149 chr1 141879736 141879884 -100784469 + FLAM_C SINE Alu 2 127 -16 1763 59 0 0 chr1 141880086 141880305 -100784048 + AluY SINE Alu 83 301 -10 2246 81 0 0 chr1 141880415 141880724 -100783629 + AluSq SINE Alu 1 309 0 2242 77 0 13 chr1 141880848 141881148 -100783205 + AluSp SINE Alu 2 297 -16 2253 100 0 0 chr1 141881917 141882217 -100782136 + AluSg SINE Alu 1 300 -10 3022 157 26 2 chr1 141882217 141882719 -100781634 - L1MD1 LINE L1 -26 6216 5703 403 153 18 27 chr1 141882721 141882832 -100781521 + CT-rich Low_complexity Low_complexity 1 110 0 1079 210 16 23 chr1 141882851 141883108 -100781245 - AluJb SINE Alu -34 278 24 1803 146 3 17 chr1 141883108 141883409 -100780944 + AluSx SINE Alu 1 297 -15 1970 119 21 65 chr1 141883442 141883829 -100780524 - L1MDa LINE L1 -4058 2482 2113 2350 160 69 54 chr1 141884422 141885016 -100779337 - L1MDa LINE L1 -4411 2129 1527 2134 116 0 0 chr1 141885202 141885505 -100778848 - AluSx SINE Alu -9 303 1 222 371 57 6 chr1 141885781 141885940 -100778413 - L2 LINE L2 -226 3087 2921 239 203 139 13 chr1 141885968 141886047 -100778306 - L2 LINE L2 -458 2856 2768 2194 92 0 7 chr1 141886208 141886511 -100777842 - AluSx SINE Alu -6 306 6 797 188 0 0 chr1 141886691 141886829 -100777524 + AluSg/x SINE Alu 164 301 -11 22 35 0 0 chr1 141886883 141886912 -100777441 + AT_rich Low_complexity Low_complexity 1 29 0 2282 54 0 48 chr1 141887033 141887347 -100777006 + AluSx SINE Alu 10 308 -4 2906 107 37 132 chr1 141887347 141887711 -100776642 - MER39B LTR ERV1 -86 567 286 2061 90 17 3 chr1 141887711 141887999 -100776354 - AluSg SINE Alu -18 292 1 2906 107 37 132 chr1 141887999 141888261 -100776092 - MER39B LTR ERV1 -367 286 1 721 311 22 25 chr1 141888261 141888628 -100775725 - L1ME LINE L1 -504 5662 5297 1441 165 15 11 chr1 141888649 141888916 -100775437 - L1MD3 LINE L1 0 7995 7728 279 234 91 0 chr1 141888918 141888995 -100775358 - L1ME LINE L1 -862 5284 5201 1994 119 20 10 chr1 141889003 141889305 -100775048 - AluSg SINE Alu -5 305 1 1188 129 0 0 chr1 141889308 141889479 -100774874 - AluSg/x SINE Alu -4 308 138 253 180 109 55 chr1 141889522 141889650 -100774703 - L1M LINE L1 -2381 5427 5293 1135 227 101 18 chr1 141889655 141889932 -100774421 - AluJo SINE Alu 0 302 3 1812 128 79 3 chr1 141892619 141892909 -100771444 + AluSx SINE Alu 1 312 0 828 138 0 0 chr1 141892909 141893025 -100771328 + AluSq SINE Alu 134 249 -64 244 329 37 12 chr1 141893114 141893196 -100771157 + MIR SINE MIR 19 102 -106 1743 140 3 26 chr1 141893547 141893855 -100770498 + AluJb SINE Alu 1 301 -11 197 245 187 56 chr1 141895002 141895165 -100769188 + MIR SINE MIR 38 217 -45 279 0 0 0 chr1 141895814 141895845 -100768508 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 9125 42 7 143 chr1 141895845 141897379 -100766974 + SVA Other Other 57 1380 -6 183 309 95 40 chr1 141898534 141898660 -100765693 + MIR3 SINE MIR 60 192 -16 625 299 54 39 chr1 141899787 141900041 -100764312 - MER102b DNA MER1_type -1088 340 78 2384 58 0 0 chr1 141900041 141900336 -100764017 + AluY SINE Alu 1 295 -16 625 299 54 39 chr1 141900336 141900416 -100763937 - MER102b DNA MER1_type -1350 78 1 1497 223 85 42 chr1 141900419 141901169 -100763184 - L2 LINE L2 0 3313 2534 1527 128 248 0 chr1 141901173 141901463 -100762890 - MER47A DNA MER2_type -4 362 1 1386 218 142 23 chr1 141901463 141901894 -100762459 - L2 LINE L2 -779 2535 2054 971 139 0 58 chr1 141904258 141904430 -100759923 - AluSq SINE Alu -151 162 1 207 0 0 0 chr1 141905118 141905141 -100759212 + (T)n Simple_repeat Simple_repeat 1 23 0 818 188 0 0 chr1 141905287 141905420 -100758933 - FLAM_A SINE Alu 0 133 1 2293 98 3 0 chr1 141905443 141905750 -100758603 - AluSx SINE Alu -4 308 1 2194 99 3 16 chr1 141906860 141907174 -100757179 - AluSg SINE Alu 0 310 1 219 69 0 0 chr1 141907528 141907557 -100756796 + (T)n Simple_repeat Simple_repeat 1 29 0 2443 71 0 10 chr1 141907953 141908264 -100756089 - AluSq SINE Alu -5 308 1 1068 250 174 8 chr1 141908777 141909145 -100755208 - LTR16A LTR ERVL -6 444 16 229 213 53 80 chr1 141909223 141909298 -100755055 + L1P3 LINE L1 1069 1141 -5320 1849 337 69 14 chr1 141909597 141910612 -100753741 - HERV16 LTR ERVL -781 4983 3913 4077 298 57 18 chr1 141910620 141912542 -100751811 - HERV16 LTR ERVL -1527 3646 1748 1114 268 122 75 chr1 141912542 141912806 -100751547 + L1MEc LINE L1 32 282 -6114 2217 107 3 0 chr1 141912806 141913116 -100751237 + AluSp SINE Alu 1 311 -2 1114 268 122 75 chr1 141913116 141913613 -100750740 + L1MEc LINE L1 282 841 -5555 1012 194 0 0 chr1 141913613 141913778 -100750575 + FAM SINE Alu 2 166 -9 1114 268 122 75 chr1 141913778 141913881 -100750472 + L1MEc LINE L1 841 938 -5458 2153 92 17 0 chr1 141913893 141914186 -100750167 - AluSq SINE Alu -15 298 1 2150 161 0 3 chr1 141914214 141914598 -100749755 + L1 LINE L1 4947 5329 -817 2375 82 0 0 chr1 141914600 141914903 -100749450 + AluSq SINE Alu 1 303 -10 623 260 62 66 chr1 141915093 141915366 -100748987 - MLT1L LTR MaLR -335 280 9 2234 96 3 0 chr1 141915487 141915790 -100748563 + AluSx SINE Alu 2 305 -7 2124 125 6 31 chr1 141915796 141916105 -100748248 + L1MB3 LINE L1 5832 6132 -51 2409 51 0 0 chr1 141916105 141916398 -100747955 + AluY SINE Alu 1 293 -18 2124 125 6 31 chr1 141916398 141916447 -100747906 + L1MB3 LINE L1 6132 6181 -2 825 318 23 63 chr1 141917524 141917923 -100746430 - L2 LINE L2 -5 3267 2885 260 198 129 40 chr1 141918265 141918366 -100745987 - MIR SINE MIR -57 151 42 2091 102 17 0 chr1 141918396 141918689 -100745664 - AluSx SINE Alu -14 298 1 2192 92 0 0 chr1 141918869 141919152 -100745201 + AluSg SINE Alu 1 283 -27 204 40 0 0 chr1 141919155 141919180 -100745173 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1963 147 0 6 chr1 141919350 141919664 -100744689 - AluJb SINE Alu 0 312 1 260 331 92 35 chr1 141920126 141920188 -100744165 - MIR3 SINE MIR -7 201 144 414 0 0 0 chr1 141920188 141920234 -100744119 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 260 331 92 35 chr1 141920234 141920313 -100744040 - MIR3 SINE MIR -64 144 52 325 200 0 88 chr1 141920645 141920725 -100743628 + MIR3 SINE MIR 89 161 -47 2548 176 101 9 chr1 141920827 141921371 -100742982 + L1MCa LINE L1 262 855 -5571 2565 49 0 0 chr1 141921372 141921679 -100742674 - AluSq SINE Alu -4 309 3 392 156 91 0 chr1 141921679 141921756 -100742597 + LTR48B LTR ERV1 556 639 -5 2077 191 43 51 chr1 141921761 141922274 -100742079 + L1ME3A LINE L1 5662 6170 0 204 252 252 36 chr1 141922670 141922781 -100741572 + L2 LINE L2 3175 3309 -4 307 231 66 0 chr1 141922904 141923025 -100741328 + L1M2 LINE L1 5317 5445 -867 280 299 15 10 chr1 141923041 141923170 -100741183 + L1ME2 LINE L1 5655 5787 -383 940 168 7 0 chr1 141923171 141923326 -100741027 - AluJb SINE Alu -25 287 132 413 228 47 16 chr1 141923327 141923454 -100740899 + L1ME2 LINE L1 5759 5889 -275 2147 128 0 0 chr1 141923458 141923763 -100740590 + AluSx SINE Alu 1 305 -7 1551 122 0 4 chr1 141923770 141924000 -100740353 + AluSq SINE Alu 1 229 -84 1750 166 3 0 chr1 141924081 141924370 -100739983 + AluJb SINE Alu 1 290 -22 407 166 66 16 chr1 141924377 141924490 -100739863 + MIR SINE MIR 32 153 -61 2288 100 0 0 chr1 141925502 141925811 -100738542 + AluSc SINE Alu 1 309 0 2938 144 31 23 chr1 141927189 141927745 -100736608 + L1MB8 LINE L1 5619 6178 0 206 231 0 0 chr1 141927967 141928006 -100736347 + GA-rich Low_complexity Low_complexity 2 40 0 874 245 26 71 chr1 141928537 141928776 -100735577 - MIR SINE MIR 0 262 35 2168 107 3 0 chr1 141928776 141929074 -100735279 - AluSp SINE Alu -14 299 1 874 245 26 71 chr1 141929074 141929103 -100735250 - MIR SINE MIR -227 35 6 692 246 128 38 chr1 141929118 141929431 -100734922 + HAL1 LINE L1 2156 2496 -11 410 117 17 0 chr1 141929435 141929495 -100734858 + AluSp/q SINE Alu 230 290 -23 2222 107 0 0 chr1 141929506 141929786 -100734567 + AluSx SINE Alu 1 280 -32 2029 152 7 0 chr1 141929822 141930118 -100734235 + AluJo SINE Alu 1 298 -14 185 128 0 26 chr1 141930125 141930164 -100734189 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 321 268 0 10 chr1 141930491 141930588 -100733765 + LTR67 LTR ERVL 445 540 -17 901 40 0 0 chr1 141930836 141930935 -100733418 - AluYb8 SINE Alu -183 135 37 239 227 15 0 chr1 141930949 141931015 -100733338 + CT-rich Low_complexity Low_complexity 1 67 0 2087 164 3 0 chr1 141931015 141931325 -100733028 - AluJb SINE Alu -1 311 1 2275 110 0 3 chr1 141931340 141931650 -100732703 - AluSc SINE Alu 0 309 1 583 261 58 55 chr1 141931667 141931828 -100732525 - L1MC/D LINE L1 -2216 5592 5433 1900 158 24 0 chr1 141931828 141932125 -100732228 - AluJb SINE Alu -8 304 1 583 261 58 55 chr1 141932125 141932269 -100732084 - L1MC/D LINE L1 -2375 5433 5283 1293 198 106 25 chr1 141932269 141932552 -100731801 - AluJo SINE Alu -6 306 1 583 261 58 55 chr1 141932552 141932570 -100731783 - L1MC/D LINE L1 -2525 5283 5267 2408 102 0 3 chr1 141932683 141932996 -100731357 + AluSx SINE Alu 1 312 0 201 374 9 47 chr1 141933019 141933126 -100731227 - L2 LINE L2 -769 2545 2443 870 212 0 0 chr1 141933260 141933425 -100730928 - FAM SINE Alu -8 167 3 2204 80 52 3 chr1 141933459 141933745 -100730608 + AluSq SINE Alu 1 300 -13 2293 92 14 0 chr1 141933753 141934036 -100730317 + AluSx SINE Alu 11 297 -15 2348 92 0 16 chr1 141934252 141934556 -100729797 + AluSx SINE Alu 1 299 -13 185 296 102 11 chr1 141934937 141935025 -100729328 + MIR SINE MIR 36 131 -77 822 155 0 42 chr1 141935368 141935510 -100728843 - FLAM_C SINE Alu -7 136 1 2331 107 0 16 chr1 141935593 141935910 -100728443 + AluSx SINE Alu 1 312 0 717 316 72 30 chr1 141936295 141936728 -100727625 + LTR16B LTR ERVL 14 464 0 256 329 37 0 chr1 141936738 141936820 -100727533 + HERV16 LTR ERVL 8 92 -4904 912 296 98 6 chr1 141936963 141937301 -100727052 + HERV16 LTR ERVL 261 629 -4367 1547 250 94 56 chr1 141937371 141937610 -100726743 + HERV16 LTR ERVL 781 1010 -3986 2435 83 3 0 chr1 141937610 141937910 -100726443 + AluSp SINE Alu 3 303 -10 1547 250 94 56 chr1 141937910 141938105 -100726248 + HERV16 LTR ERVL 1010 1196 -3800 2130 95 18 11 chr1 141938105 141938259 -100726094 - AluSx SINE Alu -21 291 133 2376 89 0 22 chr1 141938259 141938575 -100725778 - AluY SINE Alu -2 309 1 2130 95 18 11 chr1 141938575 141938704 -100725649 - AluSx SINE Alu -179 133 6 1547 250 94 56 chr1 141938704 141938907 -100725446 + HERV16 LTR ERVL 1196 1443 -3553 1094 286 107 30 chr1 141938953 141939421 -100724932 + HERV16 LTR ERVL 1572 2075 -2921 1481 305 19 10 chr1 141939424 141939841 -100724512 + HERV16 LTR ERVL 2666 3086 -1910 599 284 32 69 chr1 141940005 141940154 -100724199 + HERV16 LTR ERVL 4505 4658 -338 2161 118 7 0 chr1 141940154 141940451 -100723902 - AluSq SINE Alu -7 306 8 599 284 32 69 chr1 141940451 141940737 -100723616 + HERV16 LTR ERVL 4658 4924 -72 436 299 96 25 chr1 141940846 141941170 -100723183 + LTR16B LTR ERVL 37 460 -4 225 247 12 24 chr1 141941213 141941298 -100723055 + (TA)n Simple_repeat Simple_repeat 1 84 0 2343 107 0 0 chr1 141941299 141941597 -100722756 - AluSg SINE Alu -12 298 1 2256 90 17 0 chr1 141941600 141941889 -100722464 - AluY SINE Alu -17 294 1 2591 75 0 0 chr1 141941891 141942196 -100722157 - AluSx SINE Alu -6 306 2 2639 46 0 7 chr1 141942201 141942507 -100721846 - AluY SINE Alu -7 304 1 2329 97 7 3 chr1 141942713 141943012 -100721341 + AluSx SINE Alu 1 300 -12 312 83 0 0 chr1 141943012 141943060 -100721293 + (TA)n Simple_repeat Simple_repeat 2 49 0 1982 164 3 19 chr1 141943618 141943935 -100720418 - AluJo SINE Alu 0 312 1 2421 84 3 0 chr1 141944139 141944438 -100719915 + AluSq SINE Alu 1 300 -13 594 187 66 111 chr1 141945110 141945211 -100719142 + MIR SINE MIR 13 102 -160 2061 159 0 3 chr1 141945211 141945513 -100718840 + AluJb SINE Alu 6 306 -6 594 187 66 111 chr1 141945513 141945609 -100718744 + MIR SINE MIR 102 201 -61 303 231 15 15 chr1 141945611 141945676 -100718677 + L1ME3 LINE L1 6070 6134 -28 1972 133 39 0 chr1 141945678 141945964 -100718389 + AluSx SINE Alu 1 297 -15 490 252 65 93 chr1 141946137 141946427 -100717926 + L2 LINE L2 3023 3304 -9 294 143 0 0 chr1 141949495 141949544 -100714809 + (TTCGGG)n Simple_repeat Simple_repeat 1 49 0 205 326 11 34 chr1 141950003 141950092 -100714261 - L2 LINE L2 0 3313 3227 2329 121 0 3 chr1 141950100 141950413 -100713940 + AluSx SINE Alu 1 312 0 1429 167 53 4 chr1 141950458 141950703 -100713650 - AluJb SINE Alu -55 257 1 812 239 56 0 chr1 141950845 141951025 -100713328 + MIR SINE MIR 73 262 0 375 284 37 28 chr1 141951065 141951174 -100713179 - MIR SINE MIR -144 118 9 851 221 132 5 chr1 141951670 141951883 -100712470 + MIR SINE MIR 5 244 -18 28 71 0 0 chr1 141951887 141951943 -100712410 + AT_rich Low_complexity Low_complexity 1 56 0 1154 163 0 0 chr1 141952326 141952492 -100711861 + AluJo SINE Alu 5 170 -142 1883 103 0 0 chr1 141952635 141952868 -100711485 - AluSq SINE Alu -80 233 1 1284 120 5 14 chr1 141952868 141953084 -100711269 - L1MC3 LINE L1 -92 7693 7480 1034 137 55 143 chr1 141953221 141953276 -100711077 + MER21A LTR ERV1 33 91 -840 2639 71 3 0 chr1 141953276 141953587 -100710766 - AluSp SINE Alu -1 312 1 1034 137 55 143 chr1 141953587 141953678 -100710675 + MER21A LTR ERV1 91 188 -743 1779 173 11 0 chr1 141953678 141953986 -100710367 - AluJo SINE Alu 0 311 1 1034 137 55 143 chr1 141953986 141954129 -100710224 + MER21A LTR ERV1 188 299 -632 * 1759 157 101 46 chr1 141954125 141954540 -100709813 + MER21B LTR ERV1 425 862 -1 2429 60 3 0 chr1 141954887 141955172 -100709181 + AluY SINE Alu 1 286 -25 2239 110 40 0 chr1 141955735 141956034 -100708319 + AluSx SINE Alu 1 311 -1 585 218 14 35 chr1 141956152 141956294 -100708059 + L2 LINE L2 3169 3307 -6 877 149 0 22 chr1 141956355 141956489 -100707864 + FLAM_C SINE Alu 3 133 0 1989 125 54 0 chr1 141956516 141956795 -100707558 - AluSx SINE Alu -17 295 2 645 219 7 0 chr1 141957297 141957434 -100706919 + L1MA10 LINE L1 6197 6334 0 976 189 6 0 chr1 141957979 141958138 -100706215 - AluJo SINE Alu -150 162 3 440 59 29 0 chr1 141958140 141958208 -100706145 + MLT1D LTR MaLR 436 505 0 2275 107 0 0 chr1 141958303 141958613 -100705740 + AluY SINE Alu 2 311 0 432 0 0 0 chr1 141958726 141958774 -100705579 + (TA)n Simple_repeat Simple_repeat 2 49 0 338 68 0 0 chr1 141958874 141958918 -100705435 + MER4E LTR ERV1 646 689 -77 1829 112 70 13 chr1 141958927 141959239 -100705114 - MER4B LTR ERV1 -280 330 1 180 351 39 0 chr1 141959244 141959321 -100705032 + L2 LINE L2 3136 3215 -57 2211 119 0 0 chr1 141959360 141959681 -100704672 - AluSq SINE Alu 0 321 1 452 276 60 15 chr1 141959808 141959942 -100704411 + MIR SINE MIR 19 158 -104 432 264 107 38 chr1 141959964 141960123 -100704230 - MIR SINE MIR -92 170 1 213 209 0 0 chr1 141960134 141960177 -100704176 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 1273 139 74 5 chr1 141960368 141960583 -100703770 + MER30 DNA MER1_type 1 230 0 287 298 77 110 chr1 141960590 141960862 -100703491 - L2 LINE L2 -10 3262 3000 188 354 40 40 chr1 141960869 141961095 -100703258 + L2 LINE L2 2450 2675 -639 613 184 28 50 chr1 141961164 141961305 -100703048 - L2 LINE L2 -9 3304 3167 2195 127 0 16 chr1 141961346 141961662 -100702691 + AluSx SINE Alu 1 311 -1 533 278 58 9 chr1 141962441 141962664 -100701689 - L1ME4a LINE L1 -196 5925 5692 227 235 26 122 chr1 141962863 141962978 -100701375 + L2 LINE L2 3208 3311 -2 2329 107 0 0 chr1 141962984 141963283 -100701070 - AluSx SINE Alu -13 299 1 22 0 0 0 chr1 141963567 141963589 -100700764 + AT_rich Low_complexity Low_complexity 1 22 0 2034 134 10 19 chr1 141963610 141963923 -100700430 - AluSx SINE Alu -2 310 1 421 328 96 15 chr1 141964144 141964415 -100699938 - L1ME4a LINE L1 -1481 4665 4373 399 294 169 22 chr1 141964415 141964646 -100699707 - L3 LINE CR1 -113 1464 1200 2210 105 47 0 chr1 141964825 141965121 -100699232 - AluSx SINE Alu -2 310 1 251 217 0 14 chr1 141965294 141965363 -100698990 + MER112 DNA MER1_type 30 97 -163 2156 146 0 0 chr1 141965372 141965681 -100698672 + AluSx SINE Alu 1 309 -3 2035 122 3 7 chr1 141966405 141966709 -100697644 - AluSx SINE Alu -9 303 1 21 0 0 0 chr1 141968475 141968496 -100695857 + AT_rich Low_complexity Low_complexity 1 21 0 317 214 12 60 chr1 141968525 141968609 -100695744 - MIR3 SINE MIR -17 191 112 2455 97 7 0 chr1 141968813 141969123 -100695230 + AluSx SINE Alu 1 312 0 545 183 152 6 chr1 141971444 141971608 -100692745 + MER112 DNA MER1_type 67 254 -6 202 184 0 0 chr1 141972233 141972249 -100692104 + GA-rich Low_complexity Low_complexity 3 18 -22 1856 170 0 34 chr1 141972249 141972572 -100691781 + AluJb SINE Alu 1 312 0 202 184 0 0 chr1 141972572 141972593 -100691760 + GA-rich Low_complexity Low_complexity 17 40 0 929 167 26 6 chr1 141972779 141972935 -100691418 + FAM SINE Alu 10 168 -17 2480 87 0 0 chr1 141975557 141975857 -100688496 + AluSg SINE Alu 1 300 -10 28 0 0 0 chr1 141976104 141976132 -100688221 + AT_rich Low_complexity Low_complexity 1 28 0 383 232 32 21 chr1 141978168 141978263 -100686090 + MIR SINE MIR 154 249 -13 234 150 0 0 chr1 141978827 141978867 -100685486 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 789 236 39 6 chr1 141980095 141980277 -100684076 + MIR SINE MIR 2 189 -73 753 269 48 24 chr1 141980333 141980582 -100683771 - Charlie8 DNA MER1_type -2161 256 2 430 181 0 69 chr1 141980885 141980966 -100683387 - MER97b DNA MER1_type? -874 179 94 2289 113 0 0 chr1 141980966 141981268 -100683085 - AluY SINE Alu -9 302 1 2377 113 0 0 chr1 141981275 141981585 -100682768 - AluSg SINE Alu 0 310 1 430 181 0 69 chr1 141981585 141981611 -100682742 - MER97b DNA MER1_type? -965 88 72 721 215 27 7 chr1 141981615 141981764 -100682589 - MER5B DNA MER1_type -26 152 1 2508 82 0 0 chr1 141981862 141982168 -100682185 + AluY SINE Alu 1 306 -5 971 172 49 25 chr1 141982536 141982739 -100681614 + MIR SINE MIR 40 247 -15 403 198 174 0 chr1 141982741 141982862 -100681491 - MER104 DNA Tc2 -4 176 35 651 158 142 0 chr1 141983131 141983251 -100681102 - AluJ SINE Alu -21 291 155 463 174 70 0 chr1 141983252 141983338 -100681015 + MIR SINE MIR 48 139 -123 343 164 41 27 chr1 141983355 141983428 -100680925 - AluJ SINE Alu -151 151 78 2147 133 3 3 chr1 141983621 141983922 -100680431 - AluSx SINE Alu -11 301 1 3221 147 56 29 chr1 141985484 141986072 -100678281 + L1MB7 LINE L1 5506 6114 -70 2129 107 35 3 chr1 141986072 141986361 -100677992 + AluSx SINE Alu 1 298 -14 3221 147 56 29 chr1 141986361 141986418 -100677935 + L1MB7 LINE L1 6114 6168 -16 2261 62 0 95 chr1 141986494 141986830 -100677523 + AluY SINE Alu 1 304 -7 270 0 0 0 chr1 141986942 141986972 -100677381 + (TG)n Simple_repeat Simple_repeat 2 31 0 2236 121 0 0 chr1 141988007 141988304 -100676049 + AluJb SINE Alu 1 297 -15 2262 110 7 0 chr1 141988306 141988606 -100675747 + AluSg SINE Alu 1 302 -8 2150 120 3 19 chr1 141988609 141988926 -100675427 + AluSq SINE Alu 1 312 -1 1923 151 0 17 chr1 141989368 141989666 -100674687 - AluSx SINE Alu -19 293 1 262 229 71 0 chr1 141990557 141990627 -100673726 - MIR SINE MIR 0 262 188 444 265 121 66 chr1 141990668 141990925 -100673428 + L2 LINE L2 3041 3311 -2 401 293 0 19 chr1 141990928 141991034 -100673319 - MIR SINE MIR -77 185 82 331 301 0 11 chr1 141991418 141991511 -100672842 - MIR SINE MIR -3 259 168 1044 253 66 14 chr1 141991518 141991807 -100672546 + MLT1F1 LTR MaLR 1 304 -263 2031 116 11 0 chr1 141991841 141992116 -100672237 - AluSp SINE Alu -2 311 34 2318 121 0 3 chr1 141992125 141992438 -100671915 - AluSx SINE Alu 0 312 1 1946 162 28 0 chr1 141992495 141992785 -100671568 - AluJb SINE Alu -14 298 1 712 242 84 14 chr1 141992786 141992933 -100671420 + MLT1F1 LTR MaLR 313 481 -61 2244 95 25 0 chr1 141992933 141993218 -100671135 - AluSp SINE Alu -21 292 1 712 242 84 14 chr1 141993218 141993285 -100671068 + MLT1F1 LTR MaLR 481 542 0 708 231 6 25 chr1 141993285 141993445 -100670908 - MIR SINE MIR -104 158 2 386 262 184 29 chr1 141993547 141993753 -100670600 + MIR SINE MIR 25 262 0 * 410 252 0 61 chr1 141993729 141993860 -100670493 - MIR SINE MIR -90 172 50 252 143 0 0 chr1 141994620 141994662 -100669691 + (A)n Simple_repeat Simple_repeat 1 42 0 989 165 50 16 chr1 141996375 141996557 -100667796 - MER5A DNA MER1_type 0 189 2 2113 133 14 0 chr1 141996634 141996927 -100667426 + AluJb SINE Alu 1 297 -15 2356 112 0 3 chr1 141996969 141997272 -100667081 + AluSq SINE Alu 1 302 -11 322 132 0 19 chr1 141997614 141997667 -100666686 - AluSp/q SINE Alu -12 291 240 979 169 38 38 chr1 141997767 141997950 -100666403 - AluJo SINE Alu -129 183 1 406 236 113 0 chr1 141998949 141999055 -100665298 - L2 LINE L2 0 3313 3196 1782 112 0 0 chr1 141999783 142000015 -100664338 + AluSg/x SINE Alu 65 296 -16 188 182 242 30 chr1 142000023 142000089 -100664264 - MIR3 SINE MIR -28 180 101 * 561 305 48 11 chr1 142000081 142000268 -100664085 + L3 LINE CR1 1279 1472 -105 1769 171 20 30 chr1 142000282 142000586 -100663767 - AluJb SINE Alu -9 303 3 1390 186 205 31 chr1 142000840 142001255 -100663098 + MER21B LTR ERV1 18 504 -359 830 152 0 0 chr1 142001255 142001380 -100662973 + FLAM_C SINE Alu 1 125 -18 2132 90 41 14 chr1 142001406 142001696 -100662657 + AluSx SINE Alu 3 300 -12 954 222 56 42 chr1 142001701 142002007 -100662346 + MER21B LTR ERV1 497 806 -57 365 271 17 34 chr1 142002823 142002941 -100661412 - L3 LINE CR1 -92 1485 1370 191 293 27 40 chr1 142003768 142003843 -100660510 + L3b LINE CR1 1390 1463 -120 2361 87 3 0 chr1 142004555 142004853 -100659500 - AluSp SINE Alu -1 312 14 287 217 12 72 chr1 142004924 142005007 -100659346 + L2 LINE L2 2971 3048 -224 316 260 208 0 chr1 142005237 142005333 -100659020 - MIR3 SINE MIR -46 162 47 24 67 0 0 chr1 142005799 142005844 -100658509 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr1 142006084 142006108 -100658245 + AT_rich Low_complexity Low_complexity 1 24 0 1638 158 20 37 chr1 142006116 142006414 -100657939 - AluJo SINE Alu -18 294 2 223 297 152 36 chr1 142006583 142006721 -100657632 - L3b LINE CR1 -147 1436 1283 381 277 34 8 chr1 142006933 142007052 -100657301 - MIR SINE MIR -50 212 91 1840 175 7 0 chr1 142007322 142007619 -100656734 + AluJo SINE Alu 1 299 -13 2157 104 0 0 chr1 142007749 142008019 -100656334 + AluSc SINE Alu 1 270 -39 334 316 96 50 chr1 142008127 142008428 -100655925 - L2 LINE L2 -2 3270 2956 203 295 16 16 chr1 142009023 142009084 -100655269 + L2 LINE L2 3125 3185 -87 341 213 8 165 chr1 142009762 142009889 -100654464 + L1ME4a LINE L1 5800 5906 -215 301 186 47 47 chr1 142010319 142010448 -100653905 + L1ME4a LINE L1 5992 6120 -1 2227 120 0 0 chr1 142010483 142010782 -100653571 + AluSx SINE Alu 1 299 -13 1627 187 0 70 chr1 142010795 142011126 -100653227 + AluJb SINE Alu 1 308 -4 1577 144 86 4 chr1 142011129 142011386 -100652967 + AluJb SINE Alu 1 278 -34 297 75 0 0 chr1 142011386 142011426 -100652927 + (CAAT)n Simple_repeat Simple_repeat 4 43 0 330 260 21 39 chr1 142011426 142011607 -100652746 + L1MC4a LINE L1 5779 5959 -162 844 230 6 0 chr1 142011691 142011865 -100652488 + MER5B DNA MER1_type 4 178 0 186 43 0 0 chr1 142012000 142012023 -100652330 + (GA)n Simple_repeat Simple_repeat 1 23 0 250 192 40 7 chr1 142012250 142012385 -100651968 + GA-rich Low_complexity Low_complexity 1 139 0 226 247 148 12 chr1 142013111 142013192 -100651161 - L2 LINE L2 0 3272 3181 330 303 60 56 chr1 142013892 142014126 -100650227 - L2 LINE L2 -33 3280 3046 513 266 7 19 chr1 142014477 142014631 -100649722 + L1ME LINE L1 5511 5662 -459 1837 155 53 12 chr1 142014681 142015003 -100649350 - MER7A DNA MER2_type 0 346 14 21 0 0 0 chr1 142015115 142015136 -100649217 + AT_rich Low_complexity Low_complexity 1 21 0 670 183 15 36 chr1 142015144 142015281 -100649072 + AluJo SINE Alu 1 134 -178 239 0 0 31 chr1 142015752 142015784 -100648569 + (GA)n Simple_repeat Simple_repeat 2 32 0 290 284 34 23 chr1 142016323 142016411 -100647942 - MIR SINE MIR -88 174 86 297 0 0 0 chr1 142016822 142016855 -100647498 + (TG)n Simple_repeat Simple_repeat 1 33 0 941 145 14 0 chr1 142016871 142017009 -100647344 - AluJb SINE Alu -86 226 87 2564 49 0 16 chr1 142017031 142017337 -100647016 + AluY SINE Alu 1 301 -10 312 377 24 19 chr1 142018011 142018218 -100646135 - L2 LINE L2 -368 2946 2739 443 224 24 31 chr1 142018582 142018733 -100645620 + MLT1J1 LTR MaLR 3 153 -297 425 229 82 8 chr1 142018733 142018837 -100645516 - MER5C DNA MER1_type -2 322 206 207 0 0 0 chr1 142018837 142018860 -100645493 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 425 229 82 8 chr1 142018860 142018877 -100645476 - MER5C DNA MER1_type -118 206 192 1023 166 78 37 chr1 142018887 142019104 -100645249 - AluJo SINE Alu -2 310 85 2304 90 0 19 chr1 142019129 142019440 -100644913 - AluSg SINE Alu -5 305 1 1473 153 4 13 chr1 142019440 142019676 -100644677 - AluYa5 SINE Alu -75 236 3 1001 157 0 13 chr1 142019700 142019853 -100644500 - AluJb SINE Alu -161 151 1 213 39 0 0 chr1 142020208 142020234 -100644119 + (T)n Simple_repeat Simple_repeat 1 26 0 848 165 0 0 chr1 142020245 142020372 -100643981 - FLAM_C SINE Alu -2 131 5 2229 128 0 3 chr1 142020483 142020780 -100643573 - AluSx SINE Alu -16 296 1 1924 102 0 109 chr1 142020937 142021272 -100643081 - AluSg SINE Alu 0 302 2 521 213 102 72 chr1 142021687 142021750 -100642603 - MER5C DNA MER1_type -73 251 191 2013 109 38 0 chr1 142021750 142022015 -100642338 - AluSx SINE Alu -37 275 1 521 213 102 72 chr1 142022015 142022072 -100642281 - MER5C DNA MER1_type -133 191 137 2334 84 3 3 chr1 142022072 142022368 -100641985 - AluSq SINE Alu -17 296 1 521 213 102 72 chr1 142022368 142022481 -100641872 - MER5C DNA MER1_type -187 137 10 361 226 152 67 chr1 142022543 142022644 -100641709 + MLT1J1 LTR MaLR 269 391 -55 2123 125 3 10 chr1 142022644 142022947 -100641406 - AluSx SINE Alu -9 303 3 361 226 152 67 chr1 142022947 142023009 -100641344 + MLT1J1 LTR MaLR 391 446 0 182 304 109 0 chr1 142023509 142023601 -100640752 - L3b LINE CR1 -198 1385 1284 351 0 0 0 chr1 142024286 142024325 -100640028 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2078 126 0 18 chr1 142024327 142024612 -100639741 - AluSx SINE Alu -32 280 1 2433 93 0 0 chr1 142024629 142024940 -100639413 - AluSq SINE Alu 0 313 3 301 321 19 12 chr1 142025037 142025199 -100639154 + GA-rich Low_complexity Low_complexity 2 164 0 555 286 102 10 chr1 142025290 142025496 -100638857 - L2 LINE L2 -571 2743 2519 926 177 112 56 chr1 142025585 142025800 -100638553 + AluJb SINE Alu 85 311 -1 1099 170 47 77 chr1 142025846 142025999 -100638354 + MER33 DNA MER1_type 1 150 -2435 1949 135 24 7 chr1 142025999 142026295 -100638058 + AluJb SINE Alu 12 312 0 1099 170 47 77 chr1 142026295 142026482 -100637871 + MER33 DNA MER1_type 150 324 0 223 288 125 0 chr1 142027796 142027876 -100636477 - L2 LINE L2 -1 3271 3182 200 247 27 127 chr1 142028152 142028302 -100636051 + L3b LINE CR1 1276 1410 -173 21 0 0 0 chr1 142028903 142028924 -100635429 + GC_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr1 142231671 142231697 -100432656 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr1 142232634 142232656 -100431697 + GC_rich Low_complexity Low_complexity 1 22 0 563 254 116 20 chr1 142233691 142233981 -100430372 - MIR SINE MIR -1 261 31 1852 69 50 19 chr1 142234001 142234261 -100430092 - AluSx SINE Alu -39 273 6 1959 133 7 7 chr1 142234393 142234694 -100429659 - AluSx SINE Alu -7 305 5 671 161 0 88 chr1 142234708 142234791 -100429562 - FLAM_A SINE Alu -179 132 64 2247 92 0 0 chr1 142234791 142235094 -100429259 + AluY SINE Alu 1 303 -8 671 161 0 88 chr1 142235094 142235147 -100429206 - FLAM_A SINE Alu -247 64 8 2128 89 48 3 chr1 142235259 142235552 -100428801 - AluSx SINE Alu -6 306 1 852 261 23 38 chr1 142235592 142235856 -100428497 + MIR SINE MIR 3 262 0 416 244 43 9 chr1 142236003 142236118 -100428235 - L2 LINE L2 -1 3312 3194 321 226 24 24 chr1 142236443 142236527 -100427826 - MIR SINE MIR -112 150 67 509 191 0 140 chr1 142236543 142236700 -100427653 - AluJb SINE Alu -177 135 1 2055 115 0 29 chr1 142236703 142236878 -100427475 - AluSq SINE Alu -8 305 141 2036 109 19 35 chr1 142236878 142237189 -100427164 - AluSg SINE Alu -4 306 1 2055 115 0 29 chr1 142237189 142237327 -100427026 - AluSq SINE Alu -172 141 1 2098 94 28 0 chr1 142237337 142237504 -100426849 - AluSg SINE Alu -14 296 116 459 0 0 0 chr1 142237504 142237555 -100426798 + (TG)n Simple_repeat Simple_repeat 2 52 0 2098 94 28 0 chr1 142237555 142237675 -100426678 - AluSg SINE Alu -194 116 1 2029 129 27 0 chr1 142237834 142238128 -100426225 - AluSx SINE Alu -10 302 1 23 0 0 0 chr1 142239705 142239728 -100424625 + AT_rich Low_complexity Low_complexity 1 23 0 487 220 93 0 chr1 142241112 142241230 -100423123 + L2 LINE L2 3184 3312 -1 336 192 77 0 chr1 142241279 142241357 -100422996 - MIR SINE MIR -79 183 100 2468 62 3 0 chr1 142241403 142241708 -100422645 - AluY SINE Alu -5 306 1 2341 80 0 10 chr1 142241717 142242019 -100422334 - AluSp SINE Alu -14 299 1 1279 104 6 0 chr1 142244271 142244454 -100419899 - AluSc SINE Alu -3 306 123 420 55 0 0 chr1 142244633 142244688 -100419665 + (CTG)n Simple_repeat Simple_repeat 3 57 0 236 330 22 11 chr1 142245056 142245122 -100419231 + MIR3 SINE MIR 83 149 -59 718 256 17 67 chr1 142245122 142245182 -100419171 + MIR SINE MIR 2 63 -199 2332 100 0 0 chr1 142245182 142245483 -100418870 - AluSx SINE Alu -11 301 1 718 256 17 67 chr1 142245483 142245660 -100418693 + MIR SINE MIR 63 227 -35 210 71 0 0 chr1 142246634 142246662 -100417691 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1617 137 43 8 chr1 142246665 142246921 -100417432 - AluJb SINE Alu -37 275 11 374 231 256 0 chr1 142247153 142247270 -100417083 - MIR SINE MIR 0 262 116 274 326 31 31 chr1 142247859 142247957 -100416396 + MER91B DNA MER1_type 1 98 -92 2259 92 7 0 chr1 142247963 142248258 -100416095 + AluSx SINE Alu 1 297 -15 2429 81 0 0 chr1 142248258 142248565 -100415788 + AluY SINE Alu 1 308 -3 47 0 0 0 chr1 142248566 142248613 -100415740 + AT_rich Low_complexity Low_complexity 1 47 0 264 143 0 0 chr1 142248622 142248664 -100415689 + 5S rRNA rRNA 1 42 -79 207 315 21 56 chr1 142249178 142249321 -100415032 + L2 LINE L2 3176 3313 0 447 335 95 0 chr1 142251414 142251593 -100412760 - MER91A DNA MER1_type 0 196 1 2233 118 0 0 chr1 142253232 142253538 -100410815 + AluSx SINE Alu 1 306 -6 552 281 50 0 chr1 142253563 142253723 -100410630 - MIR SINE MIR -42 220 53 384 77 0 0 chr1 142255390 142255442 -100408911 + (CA)n Simple_repeat Simple_repeat 2 53 0 216 170 57 0 chr1 142256067 142256120 -100408233 + (CCCG)n Simple_repeat Simple_repeat 1 56 0 22 35 0 0 chr1 142256499 142256528 -100407825 + GC_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr1 142257543 142257584 -100406769 + AT_rich Low_complexity Low_complexity 1 41 0 2231 94 0 7 chr1 142259425 142259722 -100404631 + AluSx SINE Alu 1 295 -17 1544 174 72 7 chr1 142259796 142260072 -100404281 - AluJb SINE Alu -18 294 1 204 125 0 0 chr1 142260186 142260218 -100404135 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 480 270 35 0 chr1 142260479 142260594 -100403759 + MIR3 SINE MIR 38 156 -52 472 330 141 5 chr1 142260738 142260944 -100403409 - MIR SINE MIR -6 256 23 204 40 0 0 chr1 142261308 142261333 -100403020 + (GGA)n Simple_repeat Simple_repeat 1 25 0 2201 88 0 3 chr1 142262761 142263085 -100401268 + AluSg SINE Alu 1 323 0 240 351 37 22 chr1 142264506 142264640 -100399713 + L3 LINE CR1 1386 1521 -56 2408 73 0 0 chr1 142265145 142265447 -100398906 + AluY SINE Alu 1 302 -9 624 167 0 48 chr1 142265447 142265573 -100398780 + AluJb SINE Alu 193 312 0 23 0 0 0 chr1 142268120 142268143 -100396210 + GC_rich Low_complexity Low_complexity 1 23 0 188 178 0 22 chr1 142268718 142268763 -100395590 + GA-rich Low_complexity Low_complexity 3 46 0 1130 172 4 107 chr1 142270817 142270853 -100393500 - MER20 DNA MER1_type 0 219 181 2020 131 0 0 chr1 142270853 142271172 -100393181 + AluSx SINE Alu 1 319 0 1130 172 4 107 chr1 142271172 142271378 -100392975 - MER20 DNA MER1_type -38 181 1 183 250 0 132 chr1 142273923 142273991 -100390362 + L2 LINE L2 10 68 -3246 22 35 0 0 chr1 142274402 142274431 -100389922 + AT_rich Low_complexity Low_complexity 1 29 0 2390 69 10 0 chr1 142274520 142274811 -100389542 + AluSq SINE Alu 1 294 -19 252 200 36 36 chr1 142274845 142274900 -100389453 + MIR SINE MIR 31 85 -123 769 70 76 89 chr1 142274949 142275006 -100389347 - L1MA8 LINE L1 -20 6271 6215 2499 75 0 0 chr1 142275006 142275311 -100389042 + AluSg SINE Alu 1 305 -5 769 70 76 89 chr1 142275311 142275411 -100388942 - L1MA8 LINE L1 -76 6215 6116 2232 118 7 3 chr1 142275440 142275746 -100388607 - AluSx SINE Alu -5 307 1 307 318 47 39 chr1 142275757 142275886 -100388467 + MIR3 SINE MIR 61 190 -18 258 235 235 0 chr1 142276133 142276214 -100388139 + MIR SINE MIR 11 110 -152 2014 58 101 4 chr1 142276223 142276499 -100387854 + AluY SINE Alu 1 303 -8 1076 153 0 6 chr1 142277364 142277541 -100386812 + AluJb SINE Alu 137 312 0 1851 133 30 47 chr1 142279475 142279775 -100384578 - AluJb SINE Alu -17 295 1 2460 83 0 0 chr1 142279786 142280086 -100384267 - AluSg SINE Alu -10 300 1 1532 105 0 0 chr1 142280599 142280799 -100383554 - AluSc SINE Alu -6 303 104 2423 88 0 0 chr1 142281111 142281406 -100382947 - AluSq SINE Alu -18 295 1 227 273 280 23 chr1 142284272 142284404 -100379949 - MIR SINE MIR -71 191 26 2231 118 0 0 chr1 142284405 142284702 -100379651 - AluSg1 SINE Alu -12 297 1 2096 112 14 3 chr1 142284704 142284990 -100379363 - AluSx SINE Alu -10 302 14 2247 95 3 0 chr1 142285465 142285761 -100378592 + AluSg SINE Alu 1 297 -13 355 250 103 10 chr1 142287668 142287777 -100376576 - MIR SINE MIR -87 121 30 229 228 18 0 chr1 142287898 142287955 -100376398 - AluYb8 SINE Alu -5 303 246 817 173 86 6 chr1 142287982 142288144 -100376209 - FAM SINE Alu 0 175 1 2351 97 3 0 chr1 142288550 142288850 -100375503 + AluSp SINE Alu 1 301 -12 343 245 56 70 chr1 142288984 142289180 -100375173 + L1MC4 LINE L1 1918 6989 -1333 300 260 90 65 chr1 142289019 142289219 -100375134 - L1MC5 LINE L1 -222 7739 7535 * 185 0 0 39 chr1 142289219 142289245 -100375108 + (TATAA)n Simple_repeat Simple_repeat 5 29 0 2138 123 3 10 chr1 142289273 142289573 -100374780 - AluSx SINE Alu -14 298 1 1193 136 0 0 chr1 142289637 142289814 -100374539 - AluSg SINE Alu -5 307 131 512 85 85 32 chr1 142289926 142290020 -100374333 - AluSg SINE Alu -180 130 32 2219 118 0 0 chr1 142290045 142290341 -100374012 + AluSx SINE Alu 1 296 -16 846 134 142 0 chr1 142290392 142290549 -100373804 + AluSg/x SINE Alu 131 306 0 259 167 21 0 chr1 142290562 142290610 -100373743 + L2 LINE L2 3264 3312 -1 225 204 21 21 chr1 142291233 142291326 -100373027 + CT-rich Low_complexity Low_complexity 3 95 0 426 39 0 0 chr1 142291692 142291744 -100372609 + (CA)n Simple_repeat Simple_repeat 2 53 0 2321 92 7 0 chr1 142292234 142292527 -100371826 + AluSp SINE Alu 1 295 -18 452 318 108 10 chr1 142293171 142293285 -100371068 - MIR SINE MIR -13 249 148 2440 106 0 0 chr1 142293285 142293596 -100370757 + AluSq SINE Alu 2 312 -1 452 318 108 10 chr1 142293596 142293676 -100370677 - MIR SINE MIR -114 148 36 2592 47 0 31 chr1 142296615 142296933 -100367420 + AluY SINE Alu 2 309 -2 1487 170 10 73 chr1 142297055 142297355 -100366998 + AluJo SINE Alu 9 289 -23 2241 71 3 55 chr1 142297355 142297681 -100366672 - AluSc SINE Alu 0 309 1 2452 54 7 3 chr1 142297684 142297980 -100366373 - AluY SINE Alu -14 297 1 2139 115 6 6 chr1 142297988 142298301 -100366052 - AluSp SINE Alu 0 313 1 2094 107 6 38 chr1 142298301 142298620 -100365733 - AluSq SINE Alu -3 310 2 2444 36 0 0 chr1 142298629 142298936 -100365417 - AluY SINE Alu 0 309 3 1170 287 6 141 chr1 142299000 142299147 -100365206 + AluSp SINE Alu 1 72 -241 2037 118 7 7 chr1 142299147 142299451 -100364902 + AluSp SINE Alu 10 313 0 1170 287 6 141 chr1 142299451 142299665 -100364688 + AluSp SINE Alu 72 313 0 2217 87 35 0 chr1 142299821 142300108 -100364245 - AluSx SINE Alu -15 297 1 2248 89 34 14 chr1 142302104 142302395 -100361958 - AluSg SINE Alu -13 297 1 2533 71 0 0 chr1 142303027 142303324 -100361029 + AluY SINE Alu 1 297 -14 1829 129 62 0 chr1 142303373 142303645 -100360708 + AluSx SINE Alu 1 289 -23 1487 174 16 12 chr1 142303669 142303922 -100360431 - AluJo SINE Alu -58 254 1 2236 100 14 3 chr1 142304065 142304354 -100359999 - AluSx SINE Alu -20 292 1 2259 107 0 0 chr1 142304581 142304880 -100359473 + AluSx SINE Alu 1 299 -13 546 83 0 94 chr1 142305093 142305189 -100359164 - AluSg/x SINE Alu -11 301 215 2379 99 0 0 chr1 142305862 142306166 -100358187 + AluY SINE Alu 1 304 -7 2086 125 20 0 chr1 142306277 142306572 -100357781 - AluSq SINE Alu -12 301 1 1013 143 167 160 chr1 142306701 142306817 -100357536 - AluJb SINE Alu 0 302 188 2246 106 0 0 chr1 142306817 142307109 -100357244 - AluSq SINE Alu -15 298 7 1013 143 167 160 chr1 142307109 142307292 -100357061 - AluJb SINE Alu -114 188 1 1207 167 40 9 chr1 142307309 142307531 -100356822 - AluJb SINE Alu 0 312 84 2157 85 9 63 chr1 142307541 142307859 -100356494 - AluSg SINE Alu -9 301 1 450 94 0 0 chr1 142307937 142308001 -100356352 - U3 snRNA snRNA -151 66 3 * 633 221 5 58 chr1 142307988 142308124 -100356229 - Charlie4 DNA MER1_type -1762 199 74 2345 116 3 0 chr1 142308124 142308434 -100355919 + AluSx SINE Alu 1 311 -1 633 221 5 58 chr1 142308434 142308487 -100355866 - Charlie4 DNA MER1_type -1887 74 20 1810 176 20 3 chr1 142308560 142308861 -100355492 - AluJo SINE Alu -1 311 6 327 268 122 16 chr1 142308866 142308989 -100355364 + MIR SINE MIR 119 254 -8 2471 76 10 0 chr1 142309307 142309609 -100354744 + AluSx SINE Alu 1 305 -7 2002 135 3 22 chr1 142309672 142309983 -100354370 - AluJo SINE Alu -7 305 1 22 35 0 0 chr1 142309994 142310023 -100354330 + AT_rich Low_complexity Low_complexity 1 29 0 2181 167 61 20 chr1 142310151 142310649 -100353704 - Tigger7 DNA MER2_type -5 2482 1 2319 97 0 3 chr1 142311047 142311347 -100353006 - AluSc SINE Alu -10 299 1 1872 141 3 42 chr1 142312069 142312248 -100352105 - AluJb SINE Alu -14 298 134 1692 122 38 4 chr1 142312248 142312486 -100351867 + AluSg SINE Alu 46 291 -19 1872 141 3 42 chr1 142312486 142312612 -100351741 - AluJb SINE Alu -178 134 5 1149 156 6 17 chr1 142312861 142313041 -100351312 - AluJo SINE Alu -14 298 121 22 0 0 0 chr1 142313050 142313072 -100351281 + AT_rich Low_complexity Low_complexity 1 22 0 2371 74 3 0 chr1 142313072 142313355 -100350998 - AluY SINE Alu -25 286 3 1757 161 61 0 chr1 142313359 142313639 -100350714 - AluJo SINE Alu -15 297 1 303 361 71 0 chr1 142313641 142313796 -100350557 + L2 LINE L2 2456 2621 -693 2550 67 0 3 chr1 142313920 142314220 -100350133 - AluY SINE Alu -12 299 1 2015 95 46 0 chr1 142314220 142314483 -100349870 - AluSx SINE Alu -13 299 25 966 196 0 0 chr1 142314498 142314661 -100349692 - FRAM SINE Alu -2 164 2 2440 101 3 0 chr1 142314669 142315002 -100349351 - AluSg SINE Alu 0 334 1 2040 84 7 31 chr1 142315064 142315377 -100348976 - AluSx SINE Alu 0 308 3 225 0 0 0 chr1 142315377 142315402 -100348951 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2208 104 0 37 chr1 142315402 142315562 -100348791 - AluSp SINE Alu -27 286 140 2422 93 6 0 chr1 142315562 142315873 -100348480 - AluSp SINE Alu 0 313 1 2208 104 0 37 chr1 142315873 142316009 -100348344 - AluSp SINE Alu -173 140 1 628 204 0 0 chr1 142316023 142316136 -100348217 - AluJb SINE Alu -5 307 195 2423 89 0 6 chr1 142316333 142316646 -100347707 - AluSx SINE Alu -1 311 1 381 75 0 0 chr1 142316669 142316722 -100347631 + (TA)n Simple_repeat Simple_repeat 1 53 0 285 250 23 0 chr1 142316729 142316817 -100347536 + L1MC4 LINE L1 6614 6703 -1339 2143 115 10 0 chr1 142316818 142317113 -100347240 - AluSq SINE Alu -15 298 1 2255 103 3 0 chr1 142317123 142317413 -100346940 - AluSp SINE Alu -22 291 1 2494 72 0 7 chr1 142317419 142317725 -100346628 - AluY SINE Alu -7 304 1 2280 117 0 0 chr1 142317725 142318023 -100346330 - AluSx SINE Alu -14 298 1 901 196 87 5 chr1 142318404 142318520 -100345833 + AluJo SINE Alu 1 139 -173 218 79 0 26 chr1 142318520 142318558 -100345795 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 2089 112 4 0 chr1 142318563 142318877 -100345476 + AluSg SINE Alu 3 317 0 2085 122 3 7 chr1 142319049 142319345 -100345008 - AluSx SINE Alu -17 295 1 1814 160 0 22 chr1 142319638 142319951 -100344402 + AluJo SINE Alu 1 306 -6 951 139 6 42 chr1 142320507 142320672 -100343681 - AluSg/x SINE Alu -17 293 135 2418 60 3 0 chr1 142320723 142321036 -100343317 + AluSp SINE Alu 1 314 0 2454 87 0 0 chr1 142321358 142321656 -100342697 - AluSg SINE Alu -12 298 1 873 139 0 0 chr1 142321663 142321792 -100342561 - FLAM_C SINE Alu -9 134 6 2245 85 6 70 chr1 142321814 142322144 -100342209 - AluSx SINE Alu -3 309 1 1049 155 0 0 chr1 142322682 142322837 -100341516 - FRAM SINE Alu -17 159 5 2226 92 7 7 chr1 142322858 142323163 -100341190 + AluSp SINE Alu 1 305 -8 699 190 0 0 chr1 142323215 142323331 -100341022 - FLAM_C SINE Alu -26 117 2 2315 119 0 0 chr1 142323426 142323738 -100340615 + AluSx SINE Alu 1 312 0 2059 134 0 0 chr1 142323888 142324199 -100340154 - AluSx SINE Alu 0 311 1 303 302 57 0 chr1 142324303 142324409 -100339944 + L2 LINE L2 3202 3313 0 2075 159 0 0 chr1 142324856 142325165 -100339188 + AluSx SINE Alu 1 309 -3 1382 79 0 0 chr1 142325178 142325356 -100338997 - L1PA11 LINE L1 -1 6173 5996 1704 148 10 46 chr1 142325438 142325573 -100338780 + AluJb SINE Alu 1 139 -173 2091 130 3 0 chr1 142325573 142325857 -100338496 + AluSx SINE Alu 1 285 -27 252 0 0 0 chr1 142325857 142325885 -100338468 + (CA)n Simple_repeat Simple_repeat 2 29 0 1704 148 10 46 chr1 142325885 142326102 -100338251 + AluJb SINE Alu 137 312 0 1775 168 10 13 chr1 142326107 142326405 -100337948 + AluJo SINE Alu 1 297 -15 1903 222 156 92 chr1 142326574 142326798 -100337555 + L2 LINE L2 1571 1779 -1535 1914 153 10 0 chr1 142326798 142326922 -100337431 + AluSx SINE Alu 3 124 -188 234 0 0 0 chr1 142326922 142326948 -100337405 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1914 153 10 0 chr1 142326948 142327117 -100337236 + AluSx SINE Alu 124 299 -13 1903 222 156 92 chr1 142327117 142327132 -100337221 + L2 LINE L2 1779 1792 -1522 2102 130 0 10 chr1 142327132 142327432 -100336921 + AluSx SINE Alu 3 299 -13 1903 222 156 92 chr1 142327432 142327642 -100336711 + L2 LINE L2 1792 1987 -1327 2319 101 7 3 chr1 142327642 142327950 -100336403 - AluSg SINE Alu -1 309 1 1903 222 156 92 chr1 142327950 142328097 -100336256 + L2 LINE L2 1987 2123 -1191 2228 123 0 0 chr1 142328097 142328406 -100335947 - AluSx SINE Alu -3 309 1 1903 222 156 92 chr1 142328406 142328908 -100335445 + L2 LINE L2 2123 2743 -571 2131 114 4 0 chr1 142329779 142330088 -100334265 + AluSq SINE Alu 1 310 0 1299 169 25 99 chr1 142330491 142330674 -100333679 - AluJb SINE Alu -12 300 144 2231 112 0 0 chr1 142330674 142330959 -100333394 - AluSg SINE Alu -25 285 1 1299 169 25 99 chr1 142330959 142331059 -100333294 - AluJb SINE Alu -168 144 38 2429 86 0 0 chr1 142331071 142331374 -100332979 - AluSc SINE Alu -6 303 1 1219 138 10 35 chr1 142331446 142331649 -100332704 + AluSg/x SINE Alu 106 303 -9 391 291 0 0 chr1 142332085 142332164 -100332189 - AluJ/FLAM SINE Alu -218 84 6 2159 113 13 0 chr1 142332810 142333110 -100331243 - AluJb SINE Alu -8 304 1 2223 130 0 0 chr1 142333612 142333912 -100330441 - AluSx SINE Alu -12 300 1 2210 87 10 17 chr1 142333921 142334220 -100330133 - AluSg1 SINE Alu -12 297 1 406 278 150 39 chr1 142334404 142334584 -100329769 + MIR SINE MIR 46 245 -17 1494 193 3 31 chr1 142334676 142334966 -100329387 - AluJo SINE Alu -30 282 1 2558 49 7 3 chr1 142335057 142335362 -100328991 - AluY SINE Alu -5 306 1 234 150 0 0 chr1 142335469 142335509 -100328844 + (TTC)n Simple_repeat Simple_repeat 3 42 0 2158 89 0 43 chr1 142336075 142336378 -100327975 + AluSq SINE Alu 1 290 -23 2782 152 15 38 chr1 142336389 142336485 -100327868 + L1MB5 LINE L1 5650 5747 -427 2191 114 3 0 chr1 142336485 142336782 -100327571 - AluSp SINE Alu -15 298 1 2782 152 15 38 chr1 142336782 142336935 -100327418 + L1MB5 LINE L1 5747 5902 -272 2422 93 7 0 chr1 142336935 142337245 -100327108 + AluSx SINE Alu 1 312 0 2782 152 15 38 chr1 142337245 142337521 -100326832 + L1MB5 LINE L1 5902 6164 -10 211 200 0 0 chr1 142338206 142338246 -100326107 + A-rich Low_complexity Low_complexity 2 41 0 2139 143 0 7 chr1 142338439 142338747 -100325606 + AluSx SINE Alu 1 306 -6 2135 96 46 3 chr1 142338947 142339229 -100325124 + AluSx SINE Alu 1 294 -18 2518 72 7 0 chr1 142339231 142339536 -100324817 + AluY SINE Alu 1 307 -4 2032 86 52 0 chr1 142339556 142339858 -100324495 + AluSp SINE Alu 1 316 0 40 0 0 0 chr1 142340257 142340297 -100324056 + AT_rich Low_complexity Low_complexity 1 40 0 1009 113 6 19 chr1 142340301 142340461 -100323892 + L1PB1 LINE L1 5991 6148 -3 1625 145 0 0 chr1 142340469 142340710 -100323643 - AluJb SINE Alu -49 263 23 6226 86 10 58 chr1 142340727 142340867 -100323486 - L1MA3 LINE L1 0 6305 6160 1716 162 6 57 chr1 142340867 142341182 -100323171 - AluJo SINE Alu -13 299 1 6226 86 10 58 chr1 142341182 142341233 -100323120 - L1MA3 LINE L1 -145 6160 6108 2172 127 0 3 chr1 142341233 142341524 -100322829 - AluSx SINE Alu -22 290 1 6226 86 10 58 chr1 142341524 142341856 -100322497 - L1MA3 LINE L1 -197 6108 5762 1760 166 0 36 chr1 142341856 142342164 -100322189 - AluJo SINE Alu -15 297 1 6226 86 10 58 chr1 142342164 142342630 -100321723 - L1MA3 LINE L1 -543 5762 5361 816 114 0 61 chr1 142342632 142342763 -100321590 - AluSg/x SINE Alu -17 295 173 2131 114 0 60 chr1 142342770 142343160 -100321193 + AluSx SINE Alu 1 370 0 4782 168 3 3 chr1 142343187 142344052 -100320301 - L1MA3 LINE L1 -797 5349 4485 716 156 0 0 chr1 142344052 142344174 -100320179 - AluSg/x SINE Alu -6 306 185 4390 190 42 80 chr1 142344179 142344468 -100319885 - L1 LINE L1 -2358 5207 4908 2250 106 3 0 chr1 142344468 142344761 -100319592 - AluSx SINE Alu -16 296 3 4390 190 42 80 chr1 142344761 142344978 -100319375 - L1 LINE L1 -2657 4908 4684 2445 95 0 0 chr1 142344978 142345274 -100319079 - AluSg SINE Alu -14 296 1 4390 190 42 80 chr1 142345274 142345515 -100318838 - L1 LINE L1 -2881 4684 4435 2199 90 0 17 chr1 142345515 142345814 -100318539 - AluSq SINE Alu 0 313 20 4390 190 42 80 chr1 142345814 142345859 -100318494 - L1 LINE L1 -3130 4435 4390 2297 104 0 13 chr1 142345859 142346167 -100318186 - AluSg SINE Alu -6 304 1 4390 190 42 80 chr1 142346167 142346449 -100317904 - L1 LINE L1 -3175 4390 4099 423 0 0 0 chr1 142346449 142346496 -100317857 + (TG)n Simple_repeat Simple_repeat 2 48 0 2372 97 17 0 chr1 142346501 142346799 -100317554 - AluSq SINE Alu -10 303 1 4390 190 42 80 chr1 142346799 142346811 -100317542 - L1 LINE L1 -3470 4095 4084 464 130 0 26 chr1 142346811 142346888 -100317465 - AluJo/FRAM SINE Alu -25 287 213 1773 171 0 26 chr1 142346888 142347198 -100317155 - AluJb SINE Alu -10 302 1 4390 190 42 80 chr1 142347198 142347791 -100316562 - L1 LINE L1 -3479 4086 3599 645 100 11 0 chr1 142347791 142347910 -100316443 - AluSx SINE Alu 0 313 194 1046 113 0 7 chr1 142347911 142348053 -100316300 - AluSx SINE Alu -172 141 1 6856 81 28 30 chr1 142348053 142348270 -100316083 - L1 LINE L1 -3957 3608 3392 1714 159 3 57 chr1 142348270 142348466 -100315887 - AluJb SINE Alu -15 297 123 2354 115 0 6 chr1 142348466 142348778 -100315575 - AluSq SINE Alu -2 311 2 1714 159 3 57 chr1 142348778 142348895 -100315458 - AluJb SINE Alu -189 123 1 6856 81 28 30 chr1 142348895 142349370 -100314983 - L1 LINE L1 -4173 3392 2916 2363 93 0 7 chr1 142349370 142349670 -100314683 - AluSx SINE Alu -14 298 1 6856 81 28 30 chr1 142349670 142350054 -100314299 - L1 LINE L1 -4649 2916 2533 716 139 0 0 chr1 142350056 142350157 -100314196 - U6 snRNA snRNA -6 101 1 969 186 0 24 chr1 142350162 142350329 -100314024 - FRAM SINE Alu -21 155 1 738 212 8 0 chr1 142350393 142350525 -100313828 + FLAM_A SINE Alu 1 133 0 226 148 37 0 chr1 142350544 142350598 -100313755 + GA-rich Low_complexity Low_complexity 5 60 0 2454 68 0 16 chr1 142350715 142351025 -100313328 - AluY SINE Alu -6 305 1 1810 189 0 0 chr1 142351093 142351399 -100312954 - AluJb SINE Alu -6 306 1 243 103 0 0 chr1 142351445 142351484 -100312869 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1614 149 17 0 chr1 142351489 142351724 -100312629 - AluSx SINE Alu -32 280 42 219 69 0 0 chr1 142351781 142351810 -100312543 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1995 144 0 10 chr1 142352239 142352537 -100311816 - AluJb SINE Alu -17 295 1 2263 67 0 7 chr1 142352550 142352862 -100311491 - AluY SINE Alu 0 310 1 1979 134 32 0 chr1 142352862 142353146 -100311207 - AluJb SINE Alu -19 293 1 2176 121 0 0 chr1 142353156 142353454 -100310899 - AluJb SINE Alu -14 298 1 2275 71 3 48 chr1 142353454 142353763 -100310590 - AluSp SINE Alu -18 295 1 2013 111 26 0 chr1 142353763 142354034 -100310319 - AluSx SINE Alu -14 298 21 2487 86 0 3 chr1 142354259 142354572 -100309781 + AluSq SINE Alu 2 313 0 27 29 0 0 chr1 142355502 142355536 -100308817 + AT_rich Low_complexity Low_complexity 1 34 0 1820 159 0 10 chr1 142355838 142356133 -100308220 + AluJb SINE Alu 5 296 -16 23 0 0 0 chr1 142356139 142356162 -100308191 + AT_rich Low_complexity Low_complexity 1 23 0 3936 82 12 42 chr1 142356618 142356917 -100307436 + L1MA3 LINE L1 5692 5966 -339 2171 103 24 0 chr1 142356917 142357208 -100307145 + AluSq SINE Alu 1 298 -15 3936 82 12 42 chr1 142357208 142357496 -100306857 + L1MA3 LINE L1 5966 6261 -44 3375 102 45 4 chr1 142357496 142357987 -100306366 + MER9 LTR ERVK 1 511 0 4316 99 10 19 chr1 142357987 142358604 -100305749 + HERVK9 LTR ERVK 1 611 -5305 29264 91 5 4 chr1 142358605 142361352 -100303001 + HERVK9 LTR ERVK 1348 4108 -1808 2292 91 0 17 chr1 142361352 142361648 -100302705 - AluY SINE Alu -20 291 1 29264 91 5 4 chr1 142361648 142363176 -100301177 + HERVK9 LTR ERVK 4108 5634 -282 2171 142 12 11 chr1 142363201 142363552 -100300801 + HERVK9 LTR ERVK 5635 5914 -2 3525 102 45 4 chr1 142363555 142364046 -100300307 + MER9 LTR ERVK 1 511 0 1769 153 0 95 chr1 142365040 142365202 -100299151 - AluJo SINE Alu -7 295 119 1054 64 29 17 chr1 142365202 142365375 -100298978 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1769 153 0 95 chr1 142365375 142365392 -100298961 - AluJo SINE Alu -183 119 102 2272 89 3 3 chr1 142365392 142365685 -100298668 - AluSx SINE Alu -19 293 1 1769 153 0 95 chr1 142365685 142365830 -100298523 - AluJo SINE Alu -200 102 1 350 283 145 6 chr1 142365841 142366000 -100298353 + L1ME4a LINE L1 5647 5827 -294 1153 146 0 0 chr1 142366030 142366208 -100298145 + AluSg/x SINE Alu 120 297 -15 239 250 0 0 chr1 142366208 142366252 -100298101 + L1ME4a LINE L1 6001 6044 -77 975 167 0 30 chr1 142366280 142366448 -100297905 - FRAM SINE Alu -8 168 6 1735 138 34 50 chr1 142366556 142366854 -100297499 - AluJb SINE Alu -19 293 1 1721 186 7 0 chr1 142367116 142367411 -100296942 - AluJb SINE Alu -15 297 1 423 0 0 0 chr1 142367825 142367872 -100296481 + (TG)n Simple_repeat Simple_repeat 2 48 0 989 178 0 35 chr1 142367873 142368042 -100296311 - FAM SINE Alu -12 163 1 1719 148 16 60 chr1 142369041 142369187 -100295166 + AluJo SINE Alu 1 152 -160 1921 148 10 10 chr1 142369187 142369484 -100294869 + AluJb SINE Alu 1 297 -15 1719 148 16 60 chr1 142369484 142369655 -100294698 + AluJo SINE Alu 152 304 -8 2036 118 47 0 chr1 142370104 142370383 -100293970 + AluSx SINE Alu 1 292 -20 2123 120 0 0 chr1 142371230 142371542 -100292811 + AluSx SINE Alu 1 312 0 2235 101 20 0 chr1 142371963 142372260 -100292093 - AluSg SINE Alu -7 303 1 417 324 97 0 chr1 142372261 142372406 -100291947 + MIR3 SINE MIR 44 202 -6 1873 157 37 0 chr1 142372639 142372724 -100291629 - AluJb SINE Alu 0 367 287 180 0 0 0 chr1 142372724 142372744 -100291609 + (TG)n Simple_repeat Simple_repeat 1 20 0 1873 157 37 0 chr1 142372744 142373014 -100291339 - AluJb SINE Alu -80 287 1 610 296 12 18 chr1 142373131 142373300 -100291053 - L2 LINE L2 -3 3269 3102 193 350 42 33 chr1 142373688 142373808 -100290545 + L2 LINE L2 3152 3272 0 353 262 56 0 chr1 142373812 142373919 -100290434 + MIR SINE MIR 137 249 -13 203 84 70 28 chr1 142374080 142374151 -100290202 + (TA)n Simple_repeat Simple_repeat 1 74 0 832 166 0 43 chr1 142374192 142374331 -100290022 - AluJo SINE Alu -178 134 2 293 210 16 0 chr1 142374347 142374409 -100289944 + MLT1F LTR MaLR 21 83 -459 591 263 89 92 chr1 142374585 142374878 -100289475 + L2 LINE L2 2981 3272 0 2200 107 0 3 chr1 142374929 142375275 -100289078 + AluSx SINE Alu 3 347 0 1808 177 0 3 chr1 142375275 142375569 -100288784 + AluJo SINE Alu 4 296 -16 2105 141 3 3 chr1 142375745 142376057 -100288296 + AluSx SINE Alu 1 312 0 16948 49 6 10 chr1 142376091 142376466 -100287887 + L1PA6 LINE L1 2823 3198 -2948 2260 68 4 0 chr1 142376466 142376768 -100287585 + AluY SINE Alu 2 304 0 16948 49 6 10 chr1 142376768 142378537 -100285816 + L1PA6 LINE L1 3198 4959 -1187 2305 76 4 0 chr1 142378538 142378815 -100285538 + AluY SINE Alu 5 282 -29 2845 20 0 0 chr1 142378815 142379120 -100285233 + L1PA3 LINE L1 5848 6152 -3 7730 41 0 5 chr1 142379131 142380329 -100284024 + L1PA6 LINE L1 4942 6135 -19 208 0 62 0 chr1 142380332 142380364 -100283989 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 623 244 76 91 chr1 142380700 142381216 -100283137 - L1MC4 LINE L1 0 8042 7535 1008 204 0 10 chr1 142381220 142381416 -100282937 - AluJ SINE Alu -1 311 118 4690 102 22 30 chr1 142381433 142381762 -100282591 - L1PB1 LINE L1 0 6151 5821 2377 101 0 7 chr1 142381762 142382070 -100282283 - AluSg SINE Alu -4 306 1 4690 102 22 30 chr1 142382070 142382110 -100282243 - L1PB1 LINE L1 -330 5821 5782 234 0 0 0 chr1 142382110 142382136 -100282217 + (TG)n Simple_repeat Simple_repeat 2 27 0 4690 102 22 30 chr1 142382136 142382461 -100281892 - L1PB1 LINE L1 -369 5782 5462 2593 59 0 0 chr1 142382462 142382765 -100281588 - AluY SINE Alu -7 304 2 2552 160 2 2 chr1 142382799 142383377 -100280976 + L1P5 LINE L1 4885 5462 -689 808 80 0 0 chr1 142383377 142383477 -100280876 - AluJ SINE Alu -177 135 36 860 196 65 11 chr1 142383479 142383663 -100280690 + AluJo SINE Alu 104 297 -15 2081 128 0 0 chr1 142383667 142383996 -100280357 + AluSx SINE Alu 1 329 0 709 196 61 108 chr1 142383997 142384211 -100280142 - MER63A DNA MER1_type 0 210 7 1076 176 68 237 chr1 142384211 142384623 -100279730 - L1MC4 LINE L1 -633 7409 7214 2242 93 3 10 chr1 142384623 142384923 -100279430 - AluSg SINE Alu -12 298 1 1076 176 68 237 chr1 142384923 142385363 -100278990 - L1MC4 LINE L1 -828 7214 6701 227 214 0 54 chr1 142385422 142385478 -100278875 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 4056 190 36 59 chr1 142385583 142385919 -100278434 + L1M4 LINE L1 840 1182 -5643 1851 189 3 0 chr1 142385919 142386221 -100278132 - AluJo SINE Alu -7 305 3 4056 190 36 59 chr1 142386221 142386234 -100278119 + L1M4 LINE L1 1182 1194 -5631 2413 99 0 0 chr1 142386234 142386536 -100277817 - AluSc SINE Alu -7 302 1 4056 190 36 59 chr1 142386536 142387227 -100277126 + L1M4 LINE L1 1194 1900 -4925 1859 134 36 4 chr1 142387227 142387542 -100276811 + AluSx SINE Alu 1 324 0 4056 190 36 59 chr1 142387542 142387837 -100276516 + L1M4 LINE L1 1900 2201 -4624 2233 127 0 0 chr1 142387837 142388137 -100276216 + AluSx SINE Alu 1 300 -12 4056 190 36 59 chr1 142388137 142388163 -100276190 + L1M4 LINE L1 2201 2226 -4599 1496 158 49 42 chr1 142388163 142388447 -100275906 + AluJo SINE Alu 7 292 -20 2195 139 0 0 chr1 142388447 142388748 -100275605 + AluSx SINE Alu 1 301 -11 4056 190 36 59 chr1 142388748 142388985 -100275368 + L1M4 LINE L1 2224 2540 -4285 1595 169 92 0 chr1 142389137 142389421 -100274932 + AluJo SINE Alu 1 310 -2 677 190 25 0 chr1 142389434 142389555 -100274798 - FLAM_A SINE Alu -9 124 1 861 227 79 78 chr1 142390131 142390212 -100274141 + L1MB7 LINE L1 2469 2548 -4096 2362 115 0 0 chr1 142390212 142390524 -100273829 + AluSx SINE Alu 1 312 0 1735 125 20 56 chr1 142390526 142390851 -100273502 + AluSx SINE Alu 1 312 0 1782 158 0 14 chr1 142390853 142391138 -100273215 + AluSg SINE Alu 30 310 0 861 227 79 78 chr1 142391138 142391514 -100272839 + L1MB7 LINE L1 2548 2930 -3714 553 259 45 121 chr1 142391516 142391829 -100272524 + MER21B LTR ERV1 30 318 -545 1708 177 7 3 chr1 142391834 142392128 -100272225 + AluJo SINE Alu 1 295 -17 346 196 72 31 chr1 142392374 142392471 -100271882 + MER21B LTR ERV1 614 714 -149 744 129 32 0 chr1 142392481 142392605 -100271748 + L1M4 LINE L1 2411 2538 -3608 1162 160 75 0 chr1 142392605 142392792 -100271561 + MER21B LTR ERV1 328 528 -335 4595 116 45 37 chr1 142392869 142393551 -100270802 - LTR12 LTR ERV1 0 688 1 1786 114 20 0 chr1 142393552 142393806 -100270547 + MER21A LTR ERV1 604 862 -69 566 90 13 0 chr1 142393840 142393918 -100270435 + MER21A LTR ERV1 850 928 -3 1098 162 5 5 chr1 142393920 142394118 -100270235 + MER21A-int LTR ERV1 1 198 -3993 1412 159 9 0 chr1 142394163 142394341 -100270012 - AluJb SINE Alu -1 311 129 2159 134 0 7 chr1 142394341 142394646 -100269707 - AluSx SINE Alu -9 303 1 1412 159 9 0 chr1 142394646 142394693 -100269660 - AluJb SINE Alu -183 129 84 201 74 0 0 chr1 142394721 142394748 -100269605 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1066 113 0 0 chr1 142394766 142394907 -100269446 - AluJb SINE Alu -171 141 1 515 176 64 0 chr1 142394953 142395078 -100269275 + L1MB7 LINE L1 3262 3394 -3250 754 129 0 0 chr1 142395082 142395183 -100269170 - AluS SINE Alu -210 102 2 429 190 10 0 chr1 142395286 142395386 -100268967 - MER21A-int LTR ERV1 -4090 101 1 555 103 13 0 chr1 142395388 142395466 -100268887 - MER21A LTR ERV1 -3 928 850 1341 122 10 0 chr1 142395500 142395697 -100268656 - MER21A LTR ERV1 -69 862 664 2067 108 0 11 chr1 142395697 142395983 -100268370 + AluY SINE Alu 29 311 0 4626 163 46 40 chr1 142395983 142396533 -100267820 + L1MB7 LINE L1 4869 5415 -1267 2372 112 0 0 chr1 142396533 142396845 -100267508 + AluSx SINE Alu 1 312 0 4626 163 46 40 chr1 142396845 142397132 -100267221 + L1MB7 LINE L1 5415 5699 -983 1797 163 3 23 chr1 142397132 142397438 -100266915 + AluJo SINE Alu 1 300 -12 4626 163 46 40 chr1 142397438 142397641 -100266712 + L1MB7 LINE L1 5699 5899 -783 2261 119 0 0 chr1 142397641 142397943 -100266410 + AluSq SINE Alu 1 302 -11 4626 163 46 40 chr1 142397943 142398657 -100265696 + L1MB7 LINE L1 5899 6634 -48 1528 179 39 7 chr1 142398660 142398945 -100265408 + AluJb SINE Alu 2 295 -17 341 163 20 0 chr1 142398974 142399076 -100265277 + L1MC4 LINE L1 7849 8042 0 364 249 181 8 chr1 142399258 142399400 -100264953 + MIR SINE MIR 2 172 -36 27 29 0 0 chr1 142399574 142399608 -100264745 + AT_rich Low_complexity Low_complexity 1 34 0 1184 130 30 4 chr1 142399757 142399956 -100264397 + L1M3 LINE L1 5456 5660 -523 1762 144 85 0 chr1 142400421 142400691 -100263662 + AluJb SINE Alu 1 293 -19 846 199 0 0 chr1 142400702 142400833 -100263520 + FLAM_A SINE Alu 2 132 -1 391 190 113 4 chr1 142401014 142401115 -100263238 + L1 LINE L1 3947 4054 -2092 * 3363 122 21 123 chr1 142401088 142401132 -100263221 + L1MB3 LINE L1 5447 5494 -689 2185 129 0 0 chr1 142401132 142401435 -100262918 + AluSq SINE Alu 1 303 -10 3363 122 21 123 chr1 142401435 142401656 -100262697 + L1MB3 LINE L1 5494 5736 -447 1874 164 0 0 chr1 142401656 142401996 -100262357 - AluSx SINE Alu 0 343 4 3363 122 21 123 chr1 142401996 142402092 -100262261 + L1MB3 LINE L1 5736 5840 -343 2411 103 3 0 chr1 142402092 142402404 -100261949 - AluSq SINE Alu 0 313 1 3363 122 21 123 chr1 142402404 142402675 -100261678 + L1MB3 LINE L1 5840 6137 -46 2482 59 0 13 chr1 142402675 142402982 -100261371 - AluY SINE Alu -8 303 1 1908 130 10 55 chr1 142402982 142403290 -100261063 - AluSx SINE Alu -18 294 1 3363 122 21 123 chr1 142403290 142403327 -100261026 + L1MB3 LINE L1 6136 6175 -8 1957 153 3 3 chr1 142403327 142403628 -100260725 - AluJo SINE Alu -11 301 1 3363 122 21 123 chr1 142403628 142403750 -100260603 + L1MB3 LINE L1 6175 6155 -28 2336 96 3 0 chr1 142403750 142404042 -100260311 + AluSp SINE Alu 1 293 -20 3363 122 21 123 chr1 142404042 142404068 -100260285 + L1MB3 LINE L1 6154 6181 -2 490 196 0 0 chr1 142404159 142404251 -100260102 + AluJ/FRAM SINE Alu 221 312 0 1837 159 3 25 chr1 142404472 142404605 -100259748 + AluSx SINE Alu 1 135 -177 2158 107 0 4 chr1 142404605 142404909 -100259444 + AluSg SINE Alu 1 303 0 1837 159 3 25 chr1 142404909 142405089 -100259264 + AluSx SINE Alu 135 308 -4 217 129 0 0 chr1 142605958 142605989 -100058364 + (T)n Simple_repeat Simple_repeat 1 31 0 293 357 23 58 chr1 142607141 142607312 -100057041 + L2 LINE L2 3107 3271 -1 1713 125 16 91 chr1 142611690 142612010 -100052343 + AluSx SINE Alu 2 297 -15 1518 134 19 102 chr1 142612031 142612345 -100052008 + AluJo SINE Alu 6 293 -19 2347 82 0 0 chr1 142612352 142612657 -100051696 + AluY SINE Alu 1 305 -6 184 284 54 40 chr1 142613848 142613922 -100050431 + L2 LINE L2 3195 3269 -3 1746 133 32 19 chr1 142614105 142614237 -100050116 + AluJo SINE Alu 1 130 -182 2352 49 0 14 chr1 142614237 142614568 -100049785 + AluY SINE Alu 1 327 0 1746 133 32 19 chr1 142614568 142614742 -100049611 + AluJo SINE Alu 130 312 0 257 286 92 50 chr1 142614997 142615116 -100049237 + MER5A DNA MER1_type 17 140 -49 * 542 240 25 0 chr1 142615067 142615188 -100049165 + L2 LINE L2 3190 3313 0 238 278 0 28 chr1 142615187 142615259 -100049094 + MER5A DNA MER1_type 97 166 -23 * 196 229 16 33 chr1 142615207 142615268 -100049085 - MER5A DNA MER1_type -105 84 25 * 331 273 23 45 chr1 142615373 142615505 -100048848 + L2 LINE L2 3184 3312 -1 389 311 47 7 chr1 142615685 142615833 -100048520 - MIR SINE MIR -56 206 53 201 282 0 26 chr1 142615833 142615911 -100048442 + (CAGAGA)n Simple_repeat Simple_repeat 2 77 0 1371 211 81 16 chr1 142618251 142618682 -100045671 + L1MEc LINE L1 1676 2134 -4262 465 19 0 0 chr1 142619839 142619893 -100044460 + (TG)n Simple_repeat Simple_repeat 1 54 0 1902 131 6 19 chr1 142622416 142622728 -100041625 - AluSx SINE Alu -1 311 4 982 196 96 0 chr1 142622922 142623202 -100041151 + Charlie4a DNA MER1_type 129 435 -73 345 354 118 7 chr1 142623784 142623928 -100040425 - L2 LINE L2 -1 3271 3112 202 216 0 0 chr1 142624260 142624297 -100040056 - L2 LINE L2 -18 3254 3218 511 182 0 73 chr1 142624396 142624469 -100039884 + FLAM_A SINE Alu 39 103 -208 2103 127 3 0 chr1 142624469 142624777 -100039576 - AluSx SINE Alu -3 309 1 511 182 0 73 chr1 142624777 142624813 -100039540 + FLAM_A SINE Alu 103 140 -171 924 140 0 0 chr1 142624818 142624954 -100039399 + AluJo SINE Alu 1 136 -176 1450 175 90 0 chr1 142624955 142625223 -100039130 + AluJo SINE Alu 3 294 -18 277 217 4 0 chr1 142625253 142625327 -100039026 - AluJ/monomer SINE Alu -3 299 238 301 316 48 36 chr1 142626402 142626570 -100037783 + MIR3 SINE MIR 24 193 -15 258 236 0 0 chr1 142628124 142628179 -100036174 - L2 LINE L2 -8 3264 3210 243 88 0 0 chr1 142628192 142628226 -100036127 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 927 139 0 0 chr1 142628235 142628364 -100035989 - FRAM SINE Alu -29 147 19 616 267 95 9 chr1 142628506 142628716 -100035637 - MIR SINE MIR -15 247 20 207 298 13 61 chr1 142628883 142628982 -100035371 - MIR SINE MIR -22 186 93 488 263 90 6 chr1 142630861 142631017 -100033336 + MIR SINE MIR 94 262 0 24 53 0 0 chr1 142631761 142631799 -100032554 + AT_rich Low_complexity Low_complexity 1 38 0 313 240 27 0 chr1 142632001 142632076 -100032277 + MER116 DNA Mariner 4 80 0 561 167 0 22 chr1 142632837 142632927 -100031426 + FAM SINE Alu 1 81 -95 2030 102 64 7 chr1 142632976 142633271 -100031082 + AluSx SINE Alu 1 312 0 612 161 0 0 chr1 142633274 142633367 -100030986 + FAM SINE Alu 82 174 -11 295 313 62 62 chr1 142634099 142634278 -100030075 - L3 LINE CR1 -34 1543 1365 1321 153 31 28 chr1 142634288 142634543 -100029810 - L1PA15 LINE L1 -2 6163 5908 2337 94 0 0 chr1 142636853 142637162 -100027191 - AluSq SINE Alu -4 309 1 2349 65 10 0 chr1 142638132 142638423 -100025930 - AluSq SINE Alu -17 296 3 210 211 67 100 chr1 142640551 142640641 -100023712 + L2 LINE L2 3184 3270 -2 1649 171 7 20 chr1 142643280 142643572 -100020781 - AluJo SINE Alu -24 288 1 789 325 30 4 chr1 142643572 142643806 -100020547 + MIR SINE MIR 20 259 -3 2345 95 0 22 chr1 142645056 142645373 -100018980 + AluSq SINE Alu 1 310 -3 629 222 30 18 chr1 142645375 142645542 -100018811 + L1ME LINE L1 5432 5600 -566 2174 119 0 0 chr1 142645548 142645859 -100018494 + AluSq SINE Alu 1 311 -2 2136 110 7 0 chr1 142645863 142646154 -100018199 + AluSq SINE Alu 1 293 -20 2288 110 3 0 chr1 142646159 142646468 -100017885 + AluSp SINE Alu 1 310 -3 266 286 133 19 chr1 142646490 142646595 -100017758 + L2 LINE L2 3155 3271 -1 2249 85 0 0 chr1 142646610 142646920 -100017433 - AluSc SINE Alu 0 310 1 1171 161 57 82 chr1 142646984 142647288 -100017065 - AluJo SINE Alu 0 309 13 1892 142 0 29 chr1 142648314 142648623 -100015730 - AluJb SINE Alu -3 309 10 356 124 0 0 chr1 142648669 142648727 -100015626 - AluS SINE Alu -239 60 10 200 204 0 74 chr1 142648742 142648796 -100015557 - MIR SINE MIR -10 252 203 2187 119 0 6 chr1 142648842 142649153 -100015200 - AluSx SINE Alu -3 309 1 2069 101 0 4 chr1 142649196 142649506 -100014847 - AluSq SINE Alu 0 319 11 310 256 12 0 chr1 142649518 142649600 -100014753 - MIR SINE MIR -59 203 121 1892 136 3 0 chr1 142649600 142649886 -100014467 + AluSx SINE Alu 1 287 -25 645 152 0 0 chr1 142650007 142650106 -100014247 + AluSg/x SINE Alu 200 298 -11 694 73 21 0 chr1 142650107 142650203 -100014150 + AluSg SINE Alu 1 98 -212 216 234 21 0 chr1 142650309 142650356 -100013997 - MIR SINE MIR -129 133 86 28 0 0 0 chr1 142652588 142652616 -100011737 + GC_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 142652886 142652922 -100011431 + GC_rich Low_complexity Low_complexity 1 36 0 220 230 27 75 chr1 142656316 142656503 -100007850 + (CAGAGA)n Simple_repeat Simple_repeat 3 180 0 249 136 0 0 chr1 142656513 142656557 -100007796 + L2 LINE L2 3270 3313 0 213 239 0 15 chr1 142658273 142658340 -100006013 + (CA)n Simple_repeat Simple_repeat 2 67 0 246 143 0 0 chr1 142659092 142659141 -100005212 + (CAG)n Simple_repeat Simple_repeat 1 49 0 183 139 0 0 chr1 142659144 142659180 -100005173 + (CCG)n Simple_repeat Simple_repeat 2 37 0 260 253 13 0 chr1 142660245 142660324 -100004029 + (CA)n Simple_repeat Simple_repeat 1 80 0 318 212 118 0 chr1 142661302 142661387 -100002966 - MER91A DNA MER1_type -8 188 94 353 299 121 13 chr1 142661388 142661545 -100002808 - MER91A DNA MER1_type -22 174 1 492 198 89 113 chr1 142661770 142661830 -100002523 + MER112 DNA MER1_type 10 70 -190 378 74 0 0 chr1 142661830 142661884 -100002469 + (CA)n Simple_repeat Simple_repeat 1 54 0 492 198 89 113 chr1 142661884 142662070 -100002283 + MER112 DNA MER1_type 70 250 -10 686 224 146 21 chr1 142662969 142663207 -100001146 + MIR SINE MIR 4 261 -1 2402 49 0 0 chr1 142663536 142663821 -100000532 + AluY SINE Alu 11 295 -16 430 167 44 0 chr1 142663841 142663931 -100000422 + MER5A DNA MER1_type 10 103 -86 2335 63 20 0 chr1 142665850 142666149 -99998204 + AluSp SINE Alu 1 305 -8 1359 177 43 60 chr1 142666288 142666588 -99997765 - AluJo SINE Alu -17 295 1 961 163 17 0 chr1 142666639 142666811 -99997542 - AluSg/x SINE Alu -1 309 135 2105 106 0 26 chr1 142666823 142667125 -99997228 - AluSx SINE Alu -18 294 1 2405 69 16 0 chr1 142667135 142667438 -99996915 - AluSp SINE Alu -4 309 2 342 0 0 0 chr1 142667438 142667476 -99996877 + (TG)n Simple_repeat Simple_repeat 1 38 0 1051 136 0 7 chr1 142667476 142667631 -99996722 - AluSq SINE Alu -33 280 127 1757 60 0 0 chr1 142667635 142667853 -99996500 - AluY SINE Alu -12 299 82 203 310 35 11 chr1 142667854 142667941 -99996412 - MIR SINE MIR -7 255 167 566 183 107 30 chr1 142667984 142668115 -99996238 - FLAM_C SINE Alu -2 141 1 280 98 39 0 chr1 142668125 142668176 -99996177 - Alu SINE Alu 0 302 250 1022 93 0 14 chr1 142668176 142668316 -99996037 - AluJb SINE Alu -174 138 1 392 248 3 3 chr1 142668328 142668430 -99995923 - MIR SINE MIR -72 136 35 1805 158 14 3 chr1 142668450 142668747 -99995606 - AluJb SINE Alu -12 300 1 397 374 109 0 chr1 142668855 142669066 -99995287 - L2 LINE L2 -528 2786 2553 1653 171 35 3 chr1 142669072 142669358 -99994995 + AluJb SINE Alu 1 295 -17 332 312 43 36 chr1 142670394 142670532 -99993821 - L2 LINE L2 -2 3311 3173 237 307 175 0 chr1 142670752 142670918 -99993435 - L2 LINE L2 -410 2904 2710 237 329 0 0 chr1 142672088 142672167 -99992186 - L2 LINE L2 0 3313 3235 30 27 0 0 chr1 142672194 142672231 -99992122 + AT_rich Low_complexity Low_complexity 1 37 0 358 98 44 13 chr1 142672242 142672318 -99992035 + L1MB7 LINE L1 6096 6174 0 2250 88 20 3 chr1 142672344 142672641 -99991712 + AluSx SINE Alu 1 302 -10 252 143 0 0 chr1 142672641 142672683 -99991670 + (TA)n Simple_repeat Simple_repeat 1 42 0 2021 117 10 3 chr1 142672687 142672985 -99991368 + AluSx SINE Alu 1 300 -12 374 169 270 0 chr1 142672987 142673076 -99991277 - MER3 DNA MER1_type -82 127 15 437 127 0 0 chr1 142673076 142673139 -99991214 + AluS SINE Alu 1 63 -248 859 115 31 0 chr1 142673141 142673271 -99991082 + AluJb SINE Alu 156 289 -23 2335 77 0 7 chr1 142673274 142673573 -99990780 + AluSg SINE Alu 1 297 -13 2203 76 7 0 chr1 142673576 142673865 -99990488 + AluY SINE Alu 1 291 -20 2195 104 17 0 chr1 142676616 142676915 -99987438 + AluSq SINE Alu 1 304 -9 2322 92 0 16 chr1 142676915 142677229 -99987124 + AluSx SINE Alu 1 309 -3 915 253 84 24 chr1 142677343 142677828 -99986525 - L2 LINE L2 -1 3312 2532 368 244 16 57 chr1 142677837 142677960 -99986393 - L1MC4a LINE L1 -1891 5917 5800 2151 112 0 29 chr1 142678013 142678191 -99986162 - AluSx SINE Alu -7 305 138 2353 65 3 0 chr1 142678191 142678483 -99985870 - AluY SINE Alu -18 293 1 2151 112 0 29 chr1 142678483 142678618 -99985735 - AluSx SINE Alu -174 138 1 310 319 22 37 chr1 142679196 142679331 -99985022 - MIR SINE MIR -56 152 20 303 49 0 0 chr1 142679701 142679742 -99984611 - MADE1 DNA Mariner 0 80 40 2294 83 10 0 chr1 142680140 142680442 -99983911 - AluSp SINE Alu -7 306 2 25 31 0 0 chr1 142681703 142681735 -99982618 + GC_rich Low_complexity Low_complexity 1 32 0 216 318 0 0 chr1 142682171 142682237 -99982116 + C-rich Low_complexity Low_complexity 1 66 0 180 176 0 0 chr1 142682661 142682695 -99981658 + GA-rich Low_complexity Low_complexity 1 34 0 328 269 0 39 chr1 142683836 142684001 -99980352 + G-rich Low_complexity Low_complexity 1 158 0 213 259 0 0 chr1 142684129 142684187 -99980166 + G-rich Low_complexity Low_complexity 1 58 0 192 200 0 0 chr1 142685990 142686040 -99978313 + A-rich Low_complexity Low_complexity 1 50 0 280 259 82 75 chr1 142686370 142686517 -99977836 + MIR3 SINE MIR 16 163 -45 320 320 25 0 chr1 142687505 142687627 -99976726 - MIR SINE MIR -118 144 20 2242 67 0 3 chr1 142687654 142687961 -99976392 + AluY SINE Alu 1 306 0 522 239 36 14 chr1 142687974 142688112 -99976241 - MIR SINE MIR -3 259 119 223 283 0 0 chr1 142688224 142688270 -99976083 + MIR SINE MIR 69 114 -148 960 182 0 0 chr1 142688277 142688467 -99975886 - AluSg/x SINE Alu 0 313 124 339 243 149 0 chr1 142688469 142688576 -99975777 + MIR SINE MIR 123 245 -17 964 227 73 32 chr1 142689407 142689654 -99974699 + MIR SINE MIR 2 258 -4 259 203 0 38 chr1 142691903 142691982 -99972371 + (CCCCG)n Simple_repeat Simple_repeat 5 80 0 333 283 94 103 chr1 142692781 142693004 -99971349 - MIR SINE MIR -34 228 8 213 278 72 72 chr1 142693392 142693489 -99970864 - L2 LINE L2 -1 3271 3175 1309 84 0 0 chr1 142693595 142693762 -99970591 + AluSg/x SINE Alu 131 297 -15 284 255 32 43 chr1 142693769 142693863 -99970490 - MIR SINE MIR -85 177 85 595 254 107 37 chr1 142693865 142694109 -99970244 - MIR SINE MIR 0 262 2 354 255 151 14 chr1 142694123 142694266 -99970087 - MIR3 SINE MIR -35 173 9 2129 105 0 26 chr1 142694580 142694885 -99969468 + AluSx SINE Alu 1 297 -15 2156 103 0 17 chr1 142696279 142696581 -99967772 + AluSx SINE Alu 6 302 -10 327 312 116 49 chr1 142697372 142697657 -99966696 - L2 LINE L2 0 3272 2969 1794 139 30 26 chr1 142698676 142698979 -99965374 - AluJb SINE Alu -7 305 2 257 345 0 21 chr1 142700183 142700325 -99964028 + C-rich Low_complexity Low_complexity 1 139 0 301 299 28 90 chr1 142700683 142700781 -99963572 - MIR SINE MIR 0 262 182 2282 91 0 7 chr1 142700781 142701077 -99963276 + AluSq SINE Alu 1 294 -19 301 299 28 90 chr1 142701077 142701189 -99963164 - MIR SINE MIR -80 182 65 221 325 12 31 chr1 142706946 142707109 -99957244 + CT-rich Low_complexity Low_complexity 3 162 0 234 136 0 0 chr1 142710859 142710903 -99953450 + (CTG)n Simple_repeat Simple_repeat 3 46 0 341 256 74 33 chr1 142711323 142711444 -99952909 - MIR3 SINE MIR -13 195 70 812 248 93 5 chr1 142711555 142711769 -99952584 - MIR SINE MIR -10 252 20 585 254 51 30 chr1 142711800 142711997 -99952356 - MIR3 SINE MIR -7 201 1 238 299 103 17 chr1 142712599 142712716 -99951637 - MIR SINE MIR -62 146 20 707 234 151 2 chr1 142712787 142713025 -99951328 + MIR SINE MIR 1 257 -5 201 264 35 49 chr1 142717379 142717501 -99946852 - MIR SINE MIR -81 127 10 248 376 91 6 chr1 142717505 142717670 -99946683 + L2 LINE L2 254 432 -2882 211 335 183 32 chr1 142717829 142718458 -99945895 + L2 LINE L2 700 1423 -1891 2238 90 13 3 chr1 142718810 142719109 -99945244 - AluSx SINE Alu -10 302 1 1836 152 3 29 chr1 142719254 142719432 -99944921 - AluJb SINE Alu -1 311 143 1977 147 0 3 chr1 142719432 142719739 -99944614 - AluSx SINE Alu -2 310 5 1836 152 3 29 chr1 142719739 142719875 -99944478 - AluJb SINE Alu -169 143 5 246 308 120 56 chr1 142719913 142720147 -99944206 + L2 LINE L2 2140 2388 -926 2269 92 0 16 chr1 142720305 142720609 -99943744 - AluSx SINE Alu -13 299 1 192 322 72 99 chr1 142720690 142720883 -99943470 + L2 LINE L2 2811 2992 -280 1499 153 58 33 chr1 142720883 142721013 -99943340 + AluJo SINE Alu 1 126 -179 218 32 32 0 chr1 142721013 142721044 -99943309 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1499 153 58 33 chr1 142721044 142721211 -99943142 + AluJo SINE Alu 126 305 0 192 322 72 99 chr1 142721211 142721389 -99942964 + L2 LINE L2 2992 3173 -99 1224 46 0 13 chr1 142722604 142722757 -99941596 + L1PA3 LINE L1 6005 6155 0 405 272 6 76 chr1 142723083 142723241 -99941112 + L2 LINE L2 2945 3091 -181 1858 130 10 3 chr1 142723309 142723601 -99940752 + AluJb SINE Alu 1 294 -18 286 262 184 21 chr1 142723611 142723752 -99940601 + MIR SINE MIR 9 172 -90 1451 66 20 5 chr1 142723753 142723951 -99940402 - AluY SINE Alu -16 295 95 1974 113 10 7 chr1 142724061 142724362 -99939991 - AluSg SINE Alu -8 302 1 2288 93 27 0 chr1 142724367 142724668 -99939685 - AluSx SINE Alu -3 309 1 227 270 67 34 chr1 142724685 142724774 -99939579 - MIR SINE MIR -81 127 36 217 235 20 0 chr1 142725141 142725192 -99939161 - L2 LINE L2 0 3272 3221 225 329 45 107 chr1 142725534 142725777 -99938576 - L2 LINE L2 -107 3165 2938 1248 302 51 0 chr1 142725827 142726292 -99938061 + L2 LINE L2 2524 3014 -299 412 216 149 27 chr1 142726293 142726441 -99937912 + MLT1L LTR MaLR 1 166 -449 2211 103 23 0 chr1 142726648 142726948 -99937405 + AluSx SINE Alu 1 307 -5 982 48 16 8 chr1 142727326 142727452 -99936901 + BC200 scRNA scRNA 5 131 -69 431 296 17 29 chr1 142728159 142728331 -99936022 + MLT1L LTR MaLR 161 330 -285 272 120 0 0 chr1 142728318 142728368 -99935985 - Alu SINE Alu 0 308 259 * 2210 118 0 0 chr1 142728434 142728738 -99935615 - AluSq SINE Alu -9 304 1 390 274 103 34 chr1 142728745 142728920 -99935433 + MLT1L LTR MaLR 308 494 -121 2162 119 3 0 chr1 142728924 142729234 -99935119 + AluSx SINE Alu 1 311 -1 240 35 0 0 chr1 142729305 142729334 -99935019 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1883 132 0 66 chr1 142731769 142732087 -99932266 + AluJo SINE Alu 1 297 -15 2033 89 11 4 chr1 142732094 142732413 -99931940 + AluSq SINE Alu 1 321 0 180 0 0 0 chr1 142732850 142732870 -99931483 + (GGGTG)n Simple_repeat Simple_repeat 4 23 0 2193 68 10 7 chr1 142733179 142733473 -99930880 + AluY SINE Alu 1 295 -16 286 262 184 21 chr1 142733474 142733615 -99930738 - MIR SINE MIR -90 172 9 1927 134 10 0 chr1 142733625 142733916 -99930437 - AluJb SINE Alu -18 294 1 685 204 49 12 chr1 142734084 142734246 -99930107 - MER5A DNA MER1_type -1 188 21 2406 63 0 3 chr1 142734304 142734606 -99929747 - AluY SINE Alu -10 301 1 1863 102 27 27 chr1 142734660 142734816 -99929537 - AluSx SINE Alu -18 294 136 2245 98 14 0 chr1 142734816 142735112 -99929241 - AluSq SINE Alu -13 300 1 1863 102 27 27 chr1 142735112 142735249 -99929104 - AluSx SINE Alu -175 137 1 460 250 74 30 chr1 142735287 142735453 -99928900 + MER5B DNA MER1_type 7 178 0 561 167 0 22 chr1 142737576 142737666 -99926687 + FAM SINE Alu 1 81 -95 2030 102 64 7 chr1 142737715 142738010 -99926343 + AluSx SINE Alu 1 312 0 612 161 0 0 chr1 142738013 142738106 -99926247 + FAM SINE Alu 82 174 -11 295 313 62 62 chr1 142738838 142739017 -99925336 - L3 LINE CR1 -34 1543 1365 1321 153 31 28 chr1 142739027 142739282 -99925071 - L1PA15 LINE L1 -2 6163 5908 2337 94 0 0 chr1 142741589 142741898 -99922455 - AluSq SINE Alu -4 309 1 2349 65 10 0 chr1 142742868 142743159 -99921194 - AluSq SINE Alu -17 296 3 210 211 67 100 chr1 142745285 142745375 -99918978 + L2 LINE L2 3184 3270 -2 1649 171 7 20 chr1 142748014 142748306 -99916047 - AluJo SINE Alu -24 288 1 789 325 30 4 chr1 142748306 142748540 -99915813 + MIR SINE MIR 20 259 -3 2272 109 0 0 chr1 142749788 142750090 -99914263 + AluSx SINE Alu 1 302 -10 285 276 143 0 chr1 142750130 142750228 -99914125 - MIR3 SINE MIR -19 189 78 1694 147 81 0 chr1 142750359 142750631 -99913722 + AluJo SINE Alu 1 294 -18 247 220 0 0 chr1 142750661 142750720 -99913633 - AluJb SINE Alu -3 299 241 978 126 0 33 chr1 142750720 142750871 -99913482 - AluJb SINE Alu -166 146 1 312 304 179 22 chr1 142754401 142754585 -99909768 - MIR SINE MIR -2 260 48 658 202 65 0 chr1 142754643 142754811 -99909542 - FLAM_C SINE Alu 0 176 1 2488 50 0 3 chr1 142754820 142755121 -99909232 - AluY SINE Alu -11 300 1 506 203 297 7 chr1 142760662 142760800 -99903553 + MER5B DNA MER1_type 1 178 0 227 314 43 43 chr1 142760930 142761070 -99903283 + MIR3 SINE MIR 43 182 -26 226 351 27 9 chr1 142761606 142761717 -99902636 - L2 LINE L2 -237 3035 2923 216 316 60 0 chr1 142762159 142762276 -99902077 - L2 LINE L2 -939 2375 2252 269 265 133 10 chr1 142762362 142762460 -99901893 + MIR SINE MIR 79 188 -74 339 197 0 0 chr1 142764012 142764078 -99900275 - MIR SINE MIR -134 128 63 232 277 30 30 chr1 142764357 142764458 -99899895 - L2 LINE L2 -239 3033 2933 205 263 38 12 chr1 142764530 142764610 -99899743 - L2 LINE L2 -648 2666 2585 974 174 0 0 chr1 142764610 142764771 -99899582 + FRAM SINE Alu 1 161 -15 2017 102 0 37 chr1 142764776 142765125 -99899228 + AluSx SINE Alu 1 338 0 362 169 0 0 chr1 142765128 142765187 -99899166 + AluJb SINE Alu 1 59 -243 275 143 18 18 chr1 142765393 142765449 -99898904 + MER117 DNA MER1_type 29 84 -113 1681 142 0 45 chr1 142765660 142765949 -99898404 + AluJb SINE Alu 37 312 0 272 335 206 4 chr1 142765963 142766440 -99897913 - L2 LINE L2 -710 2604 2032 275 143 18 18 chr1 142767908 142767964 -99896389 + MER117 DNA MER1_type 29 84 -113 196 308 58 48 chr1 142770875 142770979 -99893374 + MIR3 SINE MIR 50 154 -54 189 191 71 0 chr1 142771287 142771329 -99893024 - L3b LINE CR1 -199 1384 1340 247 246 58 0 chr1 142771566 142771635 -99892718 - L2 LINE L2 -3 3269 3197 2036 125 3 3 chr1 142771657 142771969 -99892384 + AluSx SINE Alu 1 312 0 213 273 114 0 chr1 142772001 142772089 -99892264 + L3b LINE CR1 1342 1439 -144 182 328 99 15 chr1 142772261 142772392 -99891961 + MIR3 SINE MIR 3 144 -64 255 296 42 59 chr1 142773963 142774146 -99890207 + MIR SINE MIR 31 212 -50 188 316 51 13 chr1 142774444 142774523 -99889830 - L2 LINE L2 -235 3037 2956 1767 124 6 48 chr1 142775016 142775330 -99889023 + AluJo SINE Alu 1 301 -11 2168 76 0 61 chr1 142775361 142775689 -99888664 - AluY SINE Alu -3 308 1 393 351 39 8 chr1 142775814 142776073 -99888280 - L2 LINE L2 -2443 871 605 822 182 0 14 chr1 142776073 142776216 -99888137 + FLAM_C SINE Alu 2 142 -1 214 347 47 21 chr1 142776249 142776439 -99887914 - L2 LINE L2 -2740 574 380 1902 94 21 28 chr1 142776481 142776768 -99887585 - AluSx SINE Alu -14 298 14 1522 122 4 0 chr1 142778778 142779008 -99885345 + AluJb SINE Alu 71 301 -11 254 203 8 156 chr1 142779041 142779098 -99885255 - MIR SINE MIR -106 156 127 1362 189 30 20 chr1 142779098 142779399 -99884954 + AluJo SINE Alu 1 304 -8 254 203 8 156 chr1 142779399 142779469 -99884884 - MIR SINE MIR -135 127 48 788 238 65 65 chr1 142779891 142780003 -99884350 + MIR SINE MIR 11 122 -140 2167 91 16 13 chr1 142780003 142780312 -99884041 - AluSx SINE Alu -2 310 1 788 238 65 65 chr1 142780312 142780447 -99883906 + MIR SINE MIR 121 258 -4 291 319 43 0 chr1 142780459 142780553 -99883800 + MIR SINE MIR 57 154 -108 1221 172 9 13 chr1 142780557 142780784 -99883569 + AluJo SINE Alu 86 311 -1 2000 113 3 0 chr1 142780795 142781077 -99883276 + AluSx SINE Alu 5 287 -25 643 152 0 0 chr1 142781198 142781297 -99883056 + AluSg/x SINE Alu 203 301 -11 2346 83 0 0 chr1 142781298 142781599 -99882754 + AluSg SINE Alu 1 301 -9 2060 121 10 0 chr1 142781630 142781936 -99882417 - AluSq SINE Alu -4 309 1 1690 170 3 37 chr1 142781947 142782270 -99882083 - AluJo SINE Alu 0 312 1 323 294 74 22 chr1 142782396 142782608 -99881745 - MIR SINE MIR -11 251 35 823 112 0 0 chr1 142783100 142783216 -99881137 + AluJb SINE Alu 1 116 -196 22 0 0 0 chr1 142783222 142783244 -99881109 + AT_rich Low_complexity Low_complexity 1 22 0 306 170 7 227 chr1 142783288 142783429 -99880924 + L1MC4a LINE L1 5858 5967 -1841 227 362 0 0 chr1 142783431 142783500 -99880853 - L2 LINE L2 0 3272 3204 192 315 41 27 chr1 142783683 142783756 -99880597 - L3 LINE CR1 -7 1570 1497 1730 162 7 13 chr1 142783982 142784285 -99880068 - AluJb SINE Alu -11 301 1 2024 101 0 11 chr1 142784598 142784911 -99879442 - AluSg SINE Alu 0 310 1 1102 275 76 48 chr1 142786122 142786272 -99878081 + L2 LINE L2 2550 2694 -578 2090 116 0 0 chr1 142786272 142786599 -99877754 - AluSq SINE Alu 0 327 1 1102 275 76 48 chr1 142786599 142786986 -99877367 + L2 LINE L2 2694 3112 -160 1238 283 105 12 chr1 142786992 142787612 -99876741 - L2 LINE L2 -2 3311 2576 1912 133 19 13 chr1 142787612 142787920 -99876433 - AluSx SINE Alu -2 310 1 1238 283 105 12 chr1 142787920 142788212 -99876141 - L2 LINE L2 -737 2576 2313 583 254 0 14 chr1 142788249 142788387 -99875966 + L2 LINE L2 3137 3272 0 238 214 18 18 chr1 142788396 142788452 -99875901 + L2 LINE L2 3217 3272 0 529 273 56 18 chr1 142789233 142789456 -99874897 - MIR SINE MIR -12 250 20 1815 148 14 14 chr1 142790623 142790920 -99873433 - AluJo SINE Alu -15 297 1 351 269 75 32 chr1 142790971 142791140 -99873213 - MIR SINE MIR -65 143 14 1787 118 66 0 chr1 142791739 142792011 -99872342 + AluSx SINE Alu 5 294 -18 331 243 149 0 chr1 142792349 142792456 -99871897 - L2 LINE L2 0 3272 3150 2193 80 35 0 chr1 142792914 142793201 -99871152 - AluSx SINE Alu -15 297 1 1626 173 17 24 chr1 142793207 142793502 -99870851 - AluJo SINE Alu -19 293 1 1453 164 17 0 chr1 142793631 142793862 -99870491 + MER46A DNA MER2_type 1 235 -1 1820 159 3 7 chr1 142793913 142794214 -99870139 - AluJo SINE Alu -12 300 1 515 174 30 90 chr1 142794352 142794378 -99869975 - L1MA10 LINE L1 -2 6332 6307 2113 199 28 105 chr1 142794378 142794424 -99869929 - L1ME1 LINE L1 -8 6158 6110 2088 112 7 0 chr1 142794424 142794711 -99869642 + AluSx SINE Alu 5 293 -19 2113 199 28 105 chr1 142794711 142794934 -99869419 - L1ME1 LINE L1 -56 6110 5871 1949 121 28 3 chr1 142794934 142795224 -99869129 + AluSx SINE Alu 1 297 -15 2113 199 28 105 chr1 142795224 142795527 -99868826 - L1ME1 LINE L1 -295 5871 5546 2309 75 3 0 chr1 142795527 142795819 -99868534 - AluSp SINE Alu -20 293 1 1883 147 0 3 chr1 142795822 142796115 -99868238 - AluJb SINE Alu -20 292 1 1498 148 13 94 chr1 142796119 142796437 -99867916 - AluJb SINE Alu -20 292 1 2113 199 28 105 chr1 142796437 142796449 -99867904 - L1ME1 LINE L1 -625 5541 5530 2072 119 3 0 chr1 142796449 142796743 -99867610 - AluSp SINE Alu -18 295 1 2159 103 7 0 chr1 142796748 142797039 -99867314 - AluSq SINE Alu -20 293 1 2145 119 0 0 chr1 142797043 142797354 -99866999 - AluSq SINE Alu -2 311 1 2113 199 28 105 chr1 142797354 142797529 -99866824 - L1ME1 LINE L1 -643 5523 5439 2287 95 0 25 chr1 142797529 142797846 -99866507 - AluSx SINE Alu -3 309 1 2113 199 28 105 chr1 142797846 142797884 -99866469 - L1ME1 LINE L1 -727 5439 5400 1155 133 20 5 chr1 142797944 142798139 -99866214 + MSTA LTR MaLR 1 198 -228 546 107 0 117 chr1 142798139 142798242 -99866111 + FLAM SINE Alu 43 133 -10 1602 97 17 21 chr1 142798242 142798480 -99865873 + MSTA LTR MaLR 189 425 -3 1957 226 65 14 chr1 142798486 142799017 -99865336 + L1M4 LINE L1 3980 4543 -1603 2117 112 3 0 chr1 142799017 142799312 -99865041 - AluSx SINE Alu -16 296 1 1957 226 65 14 chr1 142799312 142799351 -99865002 + L1M4 LINE L1 4543 4579 -1567 1022 217 16 8 chr1 142799332 142799576 -99864777 - L1ME2 LINE L1 -1 6163 5918 * 310 273 41 47 chr1 142799593 142799759 -99864594 - HAL1b LINE L1 -593 755 590 2251 94 3 0 chr1 142799759 142800057 -99864296 - AluSx SINE Alu -13 299 1 310 273 41 47 chr1 142800057 142800252 -99864101 - HAL1b LINE L1 -758 590 339 467 254 158 34 chr1 142800387 142800596 -99863757 - MARNA DNA Mariner -64 522 288 211 351 40 0 chr1 142800702 142800776 -99863577 + L2 LINE L2 2924 3000 -272 2625 136 55 0 chr1 142800919 142801323 -99863030 - MSTB LTR MaLR 0 426 1 808 213 36 86 chr1 142801501 142801722 -99862631 + MER63A DNA MER1_type 1 210 0 365 207 103 26 chr1 142801788 142801904 -99862449 - MIR SINE MIR -59 203 79 615 254 44 11 chr1 142802498 142802679 -99861674 - MIR3 SINE MIR -11 197 11 382 257 150 18 chr1 142803440 142803553 -99860800 - MIR SINE MIR -52 210 83 * 422 230 133 0 chr1 142803546 142803659 -99860694 + MIR SINE MIR 23 150 -112 323 294 151 0 chr1 142804535 142804654 -99859699 - L2 LINE L2 0 3272 3136 700 245 135 10 chr1 142805754 142805962 -99858391 + MIR SINE MIR 26 259 -3 269 276 115 58 chr1 142805989 142806163 -99858190 + MIR SINE MIR 7 190 -72 308 224 103 0 chr1 142806400 142806516 -99857837 + L2 LINE L2 2481 2608 -706 224 220 0 20 chr1 142807180 142807230 -99857123 - L2 LINE L2 -2 3311 3263 1174 274 75 17 chr1 142807246 142808106 -99856247 + L1ME LINE L1 4747 5659 -505 910 178 0 0 chr1 142808148 142808300 -99856053 + FRAM SINE Alu 1 152 -24 216 0 0 0 chr1 142809993 142810017 -99854336 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 872 264 23 30 chr1 142810020 142810285 -99854068 - L2 LINE L2 -43 3270 3008 1894 199 61 5 chr1 142810314 142810691 -99853662 - MER47B DNA MER2_type -1 417 20 259 281 212 35 chr1 142810696 142811041 -99853312 - L2 LINE L2 -359 2955 2550 666 159 166 13 chr1 142811861 142812018 -99852335 - MER5A DNA MER1_type 0 189 9 1923 96 57 27 chr1 142812222 142812523 -99851830 + AluY SINE Alu 1 310 -1 1516 207 101 72 chr1 142813472 142813999 -99850354 - MLT1F LTR MaLR 0 542 1 4008 223 61 51 chr1 142814372 142815590 -99848763 - HAL1 LINE L1 -91 2416 1187 853 187 37 37 chr1 142815591 142815778 -99848575 - AluJo SINE Alu -6 306 120 384 231 225 67 chr1 142815782 142816098 -99848255 - HAL1 LINE L1 -1335 1172 807 1160 176 161 11 chr1 142816333 142816594 -99847759 - MER7A DNA MER2_type -48 298 1 220 284 125 0 chr1 142817209 142817297 -99847056 + MIR3 SINE MIR 109 207 -1 222 318 78 50 chr1 142817671 142818092 -99846261 - L2 LINE L2 -550 2764 2332 2387 80 0 3 chr1 142818298 142818611 -99845742 - AluSx SINE Alu 0 312 1 1606 165 7 4 chr1 142819342 142819614 -99844739 - AluSx SINE Alu -39 273 1 386 257 17 16 chr1 142819614 142819713 -99844640 - L1MC4 LINE L1 -827 6958 6870 2076 106 0 0 chr1 142819713 142820018 -99844335 - AluSq SINE Alu 0 305 1 386 257 17 16 chr1 142820018 142820051 -99844302 - L1MC4 LINE L1 -915 6870 6839 912 158 0 0 chr1 142820457 142820590 -99843763 + FLAM_C SINE Alu 1 133 0 318 125 18 18 chr1 142821223 142821279 -99843074 - MER5A DNA MER1_type 0 189 134 1021 212 4 13 chr1 142821283 142821514 -99842839 + AluJb SINE Alu 1 229 -83 4489 159 123 57 chr1 142821524 142822995 -99841358 + pTR5 LTR ERV1 741 2438 0 21107 89 11 17 chr1 142822998 142826732 -99837621 + HERV9 LTR ERV1 1 3798 -4601 276 319 11 0 chr1 142827121 142827212 -99837141 + MIR SINE MIR 21 112 -150 251 283 0 0 chr1 142828284 142828344 -99836009 - MIR SINE MIR -111 151 92 217 281 52 52 chr1 142828516 142828612 -99835741 - MIR SINE MIR -56 152 77 183 162 0 0 chr1 142828942 142828979 -99835374 + (CAT)n Simple_repeat Simple_repeat 2 38 0 531 287 13 33 chr1 142829841 142829991 -99834362 - MIR3 SINE MIR -21 187 41 190 211 19 58 chr1 142830083 142830135 -99834218 + MIR3 SINE MIR 110 159 -49 485 269 76 6 chr1 142830802 142831025 -99833328 + MIR SINE MIR 1 250 -12 298 215 20 74 chr1 142831421 142831570 -99832783 + CT-rich Low_complexity Low_complexity 2 142 0 269 246 161 8 chr1 142832159 142832289 -99832064 + L2 LINE L2 2612 2761 -553 225 298 107 30 chr1 142833452 142833583 -99830770 - MIR SINE MIR 0 262 122 1257 157 0 5 chr1 142833584 142833788 -99830565 + AluJo SINE Alu 1 203 -109 222 354 10 10 chr1 142833797 142833893 -99830460 - MIR SINE MIR -152 110 15 412 223 43 0 chr1 142834067 142834161 -99830192 - MER91C DNA MER1_type 0 140 43 183 204 0 0 chr1 142834579 142834628 -99829725 + GA-rich Low_complexity Low_complexity 2 50 0 206 323 10 10 chr1 142835430 142835526 -99828827 + MIR3 SINE MIR 106 201 -7 23 0 0 0 chr1 142836553 142836576 -99827777 + AT_rich Low_complexity Low_complexity 1 23 0 223 336 45 18 chr1 142836825 142836935 -99827418 - MIR SINE MIR -90 172 60 304 279 88 41 chr1 142837711 142837858 -99826495 + MER5B DNA MER1_type 25 178 0 252 349 47 0 chr1 142838700 142838806 -99825547 - MIR3 SINE MIR -46 162 52 447 284 114 25 chr1 142839950 142840151 -99824202 + MLT1K LTR MaLR 29 247 -341 2219 251 161 21 chr1 142840371 142840554 -99823799 + MER21B LTR ERV1 12 168 -695 1469 135 0 0 chr1 142840554 142840769 -99823584 + AluSg/x SINE Alu 86 300 -12 2219 251 161 21 chr1 142840769 142841262 -99823091 + MER21B LTR ERV1 168 783 -80 269 245 94 28 chr1 142841272 142841378 -99822975 + MLT1K LTR MaLR 467 579 -9 1465 196 136 11 chr1 142841724 142842076 -99822277 - MSTD LTR MaLR 0 396 1 560 301 89 71 chr1 142842091 142842530 -99821823 + L1MEc LINE L1 2040 2486 -3910 365 274 15 40 chr1 142842537 142842738 -99821615 + L1MEc LINE L1 2494 2689 -3526 2563 246 43 6 chr1 142842967 142843683 -99820670 + L1MC4 LINE L1 6999 7890 -152 1984 84 60 21 chr1 142843695 142843980 -99820373 - AluSx SINE Alu -16 296 1 231 196 54 0 chr1 142843986 142844042 -99820311 + L1MC4 LINE L1 7982 8040 -2 832 247 6 0 chr1 142844065 142844235 -99820118 + MIR SINE MIR 22 192 -70 999 182 100 136 chr1 142844335 142844782 -99819571 - MER110 LTR ERV1 0 491 80 233 154 0 26 chr1 142844941 142844980 -99819373 - MIR SINE MIR -108 154 117 704 170 144 13 chr1 142845122 142845275 -99819078 - LTR47A LTR ERVL 0 452 280 2241 86 0 7 chr1 142845276 142845579 -99818774 + AluSq SINE Alu 1 301 -12 2094 87 0 34 chr1 142845715 142846013 -99818340 - AluSc SINE Alu -21 288 1 2983 154 17 6 chr1 142846130 142846611 -99817742 - MER66B LTR ERV1 0 486 1 302 266 154 12 chr1 142846769 142846938 -99817415 - L2 LINE L2 -524 2790 2598 368 228 146 29 chr1 142847110 142847281 -99817072 - L1M4 LINE L1 -1578 4568 4378 447 279 80 45 chr1 142847907 142848108 -99816245 - MIR SINE MIR -2 260 53 29 0 0 0 chr1 142849105 142849134 -99815219 + AT_rich Low_complexity Low_complexity 1 29 0 1793 111 92 0 chr1 142849142 142849413 -99814940 - AluSg SINE Alu -14 296 1 288 183 0 0 chr1 142849433 142849493 -99814860 + L1ME4a LINE L1 6060 6119 -2 1250 254 186 28 chr1 142849906 142850379 -99813974 - MLT1E LTR MaLR -8 559 22 680 183 8 32 chr1 142850544 142850670 -99813683 + FRAM SINE Alu 1 117 -59 537 272 64 12 chr1 142851332 142851505 -99812848 - L2 LINE L2 -1309 2005 1824 1325 285 89 58 chr1 142851505 142852240 -99812113 + L1MD2 LINE L1 2 772 -5347 2600 54 0 13 chr1 142852240 142852554 -99811799 + AluY SINE Alu 1 310 -1 1325 285 89 58 chr1 142852554 142852741 -99811612 + L1MD2 LINE L1 772 952 -5167 1003 281 80 29 chr1 142852779 142853394 -99810959 + L1MD2 LINE L1 2982 3627 -2502 447 186 0 0 chr1 142853420 142853490 -99810863 - MLT1H1 LTR MaLR -282 273 204 258 32 0 0 chr1 142853539 142853570 -99810783 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 261 0 0 0 chr1 142853569 142853598 -99810755 + (GA)n Simple_repeat Simple_repeat 2 30 0 675 157 53 217 chr1 142853613 142853913 -99810440 + MLT1I LTR MaLR 107 346 -63 414 275 82 9 chr1 142854001 142854234 -99810119 + L1MD2 LINE L1 4458 4707 -1422 * 2644 195 25 15 chr1 142854221 142854740 -99809613 + L1MD2 LINE L1 5607 6130 -212 * 6645 192 33 22 chr1 142854707 142855715 -99808638 + L1M4c LINE L1 1339 2334 -4048 203 0 0 36 chr1 142855715 142855743 -99808610 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2317 72 3 7 chr1 142855745 142856036 -99808317 - AluY SINE Alu -21 290 1 6645 192 33 22 chr1 142856036 142857833 -99806520 + L1M4c LINE L1 2334 4191 -2191 1885 92 52 4 chr1 142857870 142858169 -99806184 + AluSx SINE Alu 1 312 0 281 229 88 97 chr1 142858222 142858449 -99805904 + MLT1I LTR MaLR 313 537 -12 2341 200 57 56 chr1 142858465 142858921 -99805432 + L1M4 LINE L1 2571 3030 -3116 2297 89 0 3 chr1 142858921 142859213 -99805140 + AluSq SINE Alu 1 291 -22 2341 200 57 56 chr1 142859213 142859491 -99804862 + L1M4 LINE L1 3030 3306 -2840 847 248 39 76 chr1 142859491 142859733 -99804620 - MLT1A1 LTR MaLR 0 365 193 2258 116 3 0 chr1 142859733 142860043 -99804310 + AluSx SINE Alu 1 311 -1 847 248 39 76 chr1 142860043 142860227 -99804126 - MLT1A1 LTR MaLR -172 193 4 671 274 59 0 chr1 142860239 142860443 -99803910 + L1M4 LINE L1 3311 3526 -2620 2217 109 14 0 chr1 142861897 142862191 -99802162 - AluSx SINE Alu -14 298 1 202 128 0 26 chr1 142862831 142862870 -99801483 + (CA)n Simple_repeat Simple_repeat 1 38 0 206 289 67 19 chr1 142865804 142865908 -99798445 + MIR SINE MIR 46 154 -108 367 194 40 65 chr1 142866095 142866219 -99798134 + LTR16A LTR ERVL 281 401 -49 283 336 0 9 chr1 142866971 142867087 -99797266 + MIR SINE MIR 24 138 -70 7346 24 0 0 chr1 142867789 142868624 -99795729 + L1PA4 LINE L1 5318 6152 -3 241 233 17 17 chr1 142868810 142868870 -99795483 + MLT1K LTR MaLR 183 242 -346 787 128 0 53 chr1 142869000 142869188 -99795165 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 378 0 0 0 chr1 142871080 142871122 -99793231 + (TG)n Simple_repeat Simple_repeat 2 43 0 2212 105 16 0 chr1 142871629 142871935 -99792418 + AluSq SINE Alu 1 311 -2 609 59 39 20 chr1 142872003 142872105 -99792248 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 549 226 36 0 chr1 142873590 142873727 -99790626 - MIR SINE MIR -9 253 112 318 306 37 0 chr1 142873817 142873925 -99790428 - MIR3 SINE MIR -45 163 52 336 325 16 8 chr1 142874873 142874996 -99789357 - MIR SINE MIR -2 260 137 340 311 15 7 chr1 142875030 142875165 -99789188 - L2 LINE L2 -1 3312 3177 207 191 85 53 chr1 142875269 142875363 -99788990 + MIR SINE MIR 166 262 0 1274 122 6 0 chr1 142875871 142876052 -99788301 + AluY SINE Alu 127 308 -3 639 261 103 68 chr1 142876096 142876443 -99787910 + L1ME3A LINE L1 3129 3462 -2684 2262 95 3 13 chr1 142876443 142876747 -99787606 + AluSc SINE Alu 1 301 -8 639 261 103 68 chr1 142876747 142877153 -99787200 + L1ME3A LINE L1 3462 3909 -2237 1666 251 63 50 chr1 142877202 142877697 -99786656 + MLT1E LTR MaLR 93 593 0 1462 274 83 33 chr1 142877806 142878346 -99786007 + L1ME3A LINE L1 4124 4636 -1510 2369 96 0 6 chr1 142878346 142878658 -99785695 - AluSx SINE Alu -2 310 1 1462 274 83 33 chr1 142878658 142879165 -99785188 + L1ME3A LINE L1 4636 5251 -895 909 199 66 40 chr1 142879194 142879496 -99784857 + L1ME3A LINE L1 5319 5628 -536 492 297 42 76 chr1 142879514 142879962 -99784391 + L1ME3A LINE L1 5723 6155 -15 1949 57 0 0 chr1 142880322 142880549 -99783804 - AluY SINE Alu -1 310 84 508 265 25 31 chr1 142880553 142880715 -99783638 + MIR SINE MIR 47 207 -55 2479 75 0 7 chr1 142881139 142881447 -99782906 + AluSg SINE Alu 1 306 -4 2478 72 3 0 chr1 142882059 142882363 -99781990 - AluY SINE Alu -6 305 1 1036 80 36 0 chr1 142882376 142882537 -99781816 - AluY SINE Alu 0 305 140 367 275 168 13 chr1 142882860 142883009 -99781344 + MER5B DNA MER1_type 1 172 -6 300 291 39 19 chr1 142883026 142883129 -99781224 + MIR SINE MIR 13 117 -145 2053 137 7 0 chr1 142883150 142883456 -99780897 + AluY SINE Alu 1 308 -3 1490 180 49 90 chr1 142883637 142884003 -99780350 - MLT1A1 LTR MaLR -11 354 4 2003 141 10 16 chr1 142884976 142885289 -99779064 - AluJb SINE Alu -1 311 1 2317 94 3 7 chr1 142886037 142886345 -99778008 - AluY SINE Alu -4 307 1 476 274 67 6 chr1 142886589 142886767 -99777586 + MIR SINE MIR 1 189 -73 649 148 7 70 chr1 142886767 142886874 -99777479 + MER5A DNA MER1_type 3 100 -89 3528 117 18 4 chr1 142886874 142887378 -99776975 - MER9 LTR ERVK 0 511 1 649 148 7 70 chr1 142887378 142887412 -99776941 + MER5A DNA MER1_type 100 135 -54 458 52 0 0 chr1 142887413 142887471 -99776882 - Alu SINE Alu -17 295 238 2397 104 3 0 chr1 142887471 142887797 -99776556 - pTR5 LTR ERV1 -2046 392 66 325 224 41 31 chr1 142887797 142887895 -99776458 - LTR30 LTR ERV1 -80 642 544 6163 116 31 26 chr1 142887895 142889541 -99774812 - pTR5 LTR ERV1 0 8399 504 330 180 0 0 chr1 142889537 142889598 -99774755 - HERV9 LTR ERV1 -835 7564 7504 * 809 170 47 47 chr1 142889599 142889899 -99774454 - HERV9 LTR ERV1 -5757 1139 840 9106 92 2 9 chr1 142889900 142891130 -99773223 - HERV9 LTR ERV1 -3455 4944 3723 1568 237 116 13 chr1 142891715 142892171 -99772182 + MLT1J LTR MaLR 7 509 -2 397 324 71 6 chr1 142892329 142892499 -99771854 + L2 LINE L2 2566 2746 -568 1461 215 38 3 chr1 142892505 142892793 -99771560 + AluJo SINE Alu 3 300 -2 754 175 11 32 chr1 142892809 142893244 -99771109 + GA-rich Low_complexity Low_complexity 1 426 0 30 45 0 0 chr1 142894076 142894120 -99770233 + AT_rich Low_complexity Low_complexity 1 44 0 438 20 0 0 chr1 142894473 142894524 -99769829 + (TA)n Simple_repeat Simple_repeat 1 51 0 747 148 0 8 chr1 142894643 142894765 -99769588 + AluSg/x SINE Alu 183 303 -7 324 148 0 0 chr1 142894765 142894826 -99769527 + (TA)n Simple_repeat Simple_repeat 1 61 0 1235 194 99 0 chr1 142894826 142895120 -99769233 - Zaphod DNA AcHobo -114 3917 3595 2186 85 0 0 chr1 142895272 142895544 -99768809 + AluSx SINE Alu 33 304 -8 402 111 69 0 chr1 142895544 142895616 -99768737 + L1MA2 LINE L1 6065 6141 -163 1203 150 44 44 chr1 142895618 142895844 -99768509 + AluJb SINE Alu 87 312 0 1092 87 23 46 chr1 142895846 142896019 -99768334 + L1MA3 LINE L1 6137 6305 0 1197 200 33 0 chr1 142896049 142896264 -99768089 + MLT1A1 LTR MaLR 144 365 0 1444 207 88 107 chr1 142896266 142896587 -99767766 - Zaphod DNA AcHobo -3179 852 527 565 182 33 41 chr1 142896587 142896708 -99767645 - FLAM_A SINE Alu -13 120 1 1444 207 88 107 chr1 142896708 142897143 -99767210 - Zaphod DNA AcHobo -3504 527 110 198 0 0 0 chr1 142897148 142897170 -99767183 + (TG)n Simple_repeat Simple_repeat 2 23 0 743 227 18 25 chr1 142897170 142897333 -99767020 - AluJb SINE Alu -28 284 123 2892 145 57 21 chr1 142897335 142897815 -99766538 - L1MB7 LINE L1 -16 6168 5666 1971 127 3 45 chr1 142897815 142898123 -99766230 - AluSx SINE Alu -17 295 1 2892 145 57 21 chr1 142898123 142898173 -99766180 - L1MB7 LINE L1 -518 5666 5619 243 125 0 0 chr1 142898190 142898230 -99766123 + (TG)n Simple_repeat Simple_repeat 1 40 0 836 286 71 52 chr1 142898622 142899190 -99765163 - L1ME4a LINE L1 -4 6117 5534 2371 82 3 7 chr1 142899190 142899496 -99764857 + AluSx SINE Alu 2 306 -6 836 286 71 52 chr1 142899496 142899577 -99764776 - L1ME4a LINE L1 -587 5534 5456 2170 108 28 0 chr1 142899583 142899869 -99764484 - AluSg SINE Alu -15 295 2 2377 96 3 6 chr1 142899949 142900263 -99764090 - AluSq SINE Alu 0 313 1 791 310 102 18 chr1 142900371 142900899 -99763454 - L2 LINE L2 -1 3312 2830 2197 118 3 19 chr1 142900899 142901212 -99763141 - AluSx SINE Alu -4 308 1 791 310 102 18 chr1 142901212 142901530 -99762823 - L2 LINE L2 -483 2830 2283 1863 170 0 0 chr1 142901530 142901859 -99762494 - AluJb SINE Alu 0 329 1 1570 196 11 0 chr1 142902471 142902757 -99761596 - AluJb SINE Alu -23 289 1 2265 126 3 0 chr1 142902778 142903088 -99761265 + AluSx SINE Alu 1 311 -1 752 163 16 0 chr1 142903693 142903822 -99760531 - FLAM_A SINE Alu -2 131 1 203 250 21 99 chr1 142904126 142904318 -99760035 + (CAGCC)n Simple_repeat Simple_repeat 1 177 0 329 351 48 11 chr1 142905074 142905262 -99759091 + MIR SINE MIR 7 201 -61 279 363 0 16 chr1 142905883 142906007 -99758346 + L2 LINE L2 2969 3090 -182 531 288 89 60 chr1 142906024 142906340 -99758013 - MLT1K LTR MaLR -18 570 246 3847 167 30 133 chr1 142906657 142907158 -99757195 - L1MCa LINE L1 -984 5442 4891 1945 144 7 14 chr1 142907158 142907464 -99756889 - AluSx SINE Alu 0 304 1 3847 167 30 133 chr1 142907464 142907710 -99756643 - L1MCa LINE L1 -1535 4891 4621 1911 131 28 17 chr1 142907710 142907877 -99756476 - AluSx SINE Alu -19 293 120 243 0 0 0 chr1 142907877 142907904 -99756449 + (TG)n Simple_repeat Simple_repeat 2 28 0 1911 131 28 17 chr1 142907904 142908026 -99756327 - AluSx SINE Alu -192 120 1 1080 104 0 0 chr1 142908026 142908161 -99756192 - AluSq/x SINE Alu -177 135 1 3847 167 30 133 chr1 142908161 142908587 -99755766 - L1MCa LINE L1 -1803 4623 4267 * 3871 231 23 4 chr1 142908570 142909626 -99754727 - L1MCa LINE L1 -2469 3957 2882 408 176 108 49 chr1 142909634 142909736 -99754617 - L1MCa LINE L1 -4048 2378 2271 893 282 68 67 chr1 142909738 142910352 -99754001 - L1MCa LINE L1 -4586 2021 1407 445 203 49 0 chr1 142910349 142910472 -99753881 + L1MEc LINE L1 1053 1181 -5215 * 909 171 0 40 chr1 142910478 142910589 -99753764 + MLT1F1 LTR MaLR 399 503 -64 1746 143 0 30 chr1 142910589 142910883 -99753470 + AluJb SINE Alu 26 311 0 909 171 0 40 chr1 142910883 142910946 -99753407 + MLT1F1 LTR MaLR 503 567 0 811 139 0 16 chr1 142911085 142911214 -99753139 - FLAM_C SINE Alu -4 129 3 720 267 56 58 chr1 142911251 142911340 -99753013 - MLT1L LTR MaLR -3 612 524 2513 81 3 0 chr1 142911340 142911650 -99752703 + AluY SINE Alu 1 311 0 720 267 56 58 chr1 142911650 142912103 -99752250 - MLT1L LTR MaLR -91 524 6 279 345 27 32 chr1 142912137 142912444 -99751909 + L2 LINE L2 2706 3091 -181 656 330 150 14 chr1 142912551 142913124 -99751229 + L2 LINE L2 2257 2907 -407 523 266 55 85 chr1 142913445 142913823 -99750530 - L2 LINE L2 -213 3059 2712 2196 129 7 0 chr1 142913823 142914125 -99750228 - AluSx SINE Alu -8 304 1 523 266 55 85 chr1 142914125 142914218 -99750135 - L2 LINE L2 -560 2712 2618 323 252 25 42 chr1 142914954 142915073 -99749280 - L2 LINE L2 0 3272 3156 496 263 63 110 chr1 142915257 142915702 -99748651 + L1ME4a LINE L1 5694 6117 -4 1407 92 0 0 chr1 142915768 142915941 -99748412 + AluSg/x SINE Alu 132 304 -6 266 317 212 39 chr1 142916146 142916405 -99747948 - L2 LINE L2 -3 3269 2966 425 255 0 62 chr1 142916878 142917070 -99747283 + CT-rich Low_complexity Low_complexity 1 180 0 600 289 131 57 chr1 142917782 142917852 -99746501 + MLT1L LTR MaLR 148 211 -404 2290 103 0 7 chr1 142917852 142918153 -99746200 - AluSx SINE Alu -9 303 5 600 289 131 57 chr1 142918153 142918518 -99745835 + MLT1L LTR MaLR 211 615 0 188 211 96 0 chr1 142918658 142918710 -99745643 + MIR SINE MIR 89 145 -63 2275 119 0 0 chr1 142918777 142919080 -99745273 - AluSx SINE Alu -9 303 1 230 290 74 16 chr1 142920826 142920980 -99743373 + MIR SINE MIR 35 195 -58 334 286 0 61 chr1 142921028 142921126 -99743227 - L1MC4 LINE L1 -1337 6705 6614 258 333 64 13 chr1 142922607 142922763 -99741590 + MIR3 SINE MIR 43 206 -2 1187 38 0 19 chr1 142923356 142923515 -99740838 - L1PA4 LINE L1 0 6155 6000 475 258 16 8 chr1 142923573 142923697 -99740656 - L2 LINE L2 -4 3309 3185 276 243 25 80 chr1 142924530 142924687 -99739666 + MIR SINE MIR 2 152 -63 1090 50 0 43 chr1 142925297 142925438 -99738915 + AluSq SINE Alu 131 265 -48 232 242 263 10 chr1 142925715 142925814 -99738539 + MIR3 SINE MIR 3 126 -82 698 159 7 0 chr1 142926186 142926331 -99738022 + (TCCA)n Simple_repeat Simple_repeat 3 148 0 2215 80 35 21 chr1 142926344 142926633 -99737720 - AluSg SINE Alu -17 293 1 237 316 137 0 chr1 142926633 142926750 -99737603 - L2 LINE L2 -12 3260 3128 277 218 51 0 chr1 142926822 142926900 -99737453 - MIR3 SINE MIR -5 203 122 517 339 90 35 chr1 142926974 142927396 -99736957 - L2 LINE L2 -1 3271 2827 182 378 43 43 chr1 142927573 142927761 -99736592 + L2 LINE L2 2997 3184 -88 425 248 68 30 chr1 142927858 142927991 -99736362 + MIR SINE MIR 46 183 -79 195 284 135 0 chr1 142928198 142928272 -99736081 - MIR SINE MIR -61 147 64 687 226 55 0 chr1 142928361 142928507 -99735846 + MER63 DNA MER1_type 10 789 -273 205 277 24 24 chr1 142928526 142928609 -99735744 - MIR SINE MIR -163 99 17 468 0 0 0 chr1 142929252 142929304 -99735049 + (TG)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr1 142929344 142929368 -99734985 + AT_rich Low_complexity Low_complexity 1 24 0 1857 151 7 0 chr1 142929368 142929652 -99734701 - AluJo SINE Alu -26 286 1 201 360 40 0 chr1 142929872 142929997 -99734356 + (CATG)n Simple_repeat Simple_repeat 2 131 0 182 182 0 0 chr1 142930211 142930244 -99734109 + L2 LINE L2 3271 3303 -10 271 253 48 12 chr1 142930559 142930642 -99733711 + MIR SINE MIR 31 116 -146 282 116 0 0 chr1 142930671 142930714 -99733639 + (TTC)n Simple_repeat Simple_repeat 1 43 0 211 340 88 14 chr1 142930875 142931022 -99733331 + MIR SINE MIR 84 241 -21 565 164 0 18 chr1 142931802 142931973 -99732380 + (CAG)n Simple_repeat Simple_repeat 2 169 0 435 173 0 0 chr1 142932719 142932829 -99731524 + GA-rich Low_complexity Low_complexity 2 111 0 260 250 185 0 chr1 142935084 142935176 -99729177 - L2 LINE L2 -2 3311 3203 386 272 30 1 chr1 142935202 142935325 -99729028 + MIR SINE MIR 46 171 -37 223 333 11 21 chr1 142938700 142938793 -99725560 - MIR SINE MIR -97 111 20 262 294 35 0 chr1 142939773 142939858 -99724495 + MIR3 SINE MIR 69 156 -52 2462 82 0 0 chr1 142940442 142940745 -99723608 + AluSx SINE Alu 1 303 -9 928 104 8 0 chr1 142942833 142942958 -99721395 + FLAM_C SINE Alu 9 134 -9 205 314 12 23 chr1 142942964 142943050 -99721303 - MIR SINE MIR -105 103 19 191 328 0 0 chr1 142943074 142943132 -99721221 - L2 LINE L2 -15 3257 3200 193 258 167 0 chr1 142943207 142943273 -99721080 + MIR SINE MIR 21 97 -165 768 222 113 0 chr1 142943861 142944046 -99720307 - MIR SINE MIR -10 252 47 320 291 15 41 chr1 142944395 142944546 -99719807 + MIR SINE MIR 48 192 -62 365 291 81 47 chr1 142944852 142945086 -99719267 + MIR SINE MIR 7 248 -14 198 318 0 0 chr1 142945826 142945870 -99718483 - L2 LINE L2 -7 3306 3263 300 243 29 14 chr1 142945913 142945983 -99718370 - L2 LINE L2 -1 3312 3242 3538 122 115 28 chr1 142945983 142946444 -99717909 - Tigger3(Golem) DNA MER2_type 0 3029 2486 2170 124 0 0 chr1 142946444 142946758 -99717595 - AluSx SINE Alu 0 314 1 3538 122 115 28 chr1 142946758 142946983 -99717370 - Tigger3(Golem) DNA MER2_type -543 2486 2282 406 165 271 0 chr1 142946980 142947065 -99717288 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 323 230 44 35 chr1 142947080 142947193 -99717160 - L2 LINE L2 -79 3234 3121 2204 106 0 0 chr1 142947438 142947740 -99716613 - AluY SINE Alu -9 302 1 2182 109 0 0 chr1 142947740 142948032 -99716321 - AluSx SINE Alu -20 292 1 1722 148 18 0 chr1 142948061 142948339 -99716014 + AluJo SINE Alu 1 283 -29 1446 219 10 3 chr1 142948403 142948709 -99715644 + AluJo SINE Alu 1 308 -4 424 197 197 7 chr1 142948709 142948846 -99715507 - L2 LINE L2 -246 3067 2905 1687 188 18 28 chr1 142948851 142949179 -99715174 - Charlie5 DNA MER1_type 0 2624 2299 1321 167 33 62 chr1 142949179 142949484 -99714869 + AluJo SINE Alu 2 297 -15 1687 188 18 28 chr1 142949484 142949549 -99714804 - Charlie5 DNA MER1_type -325 2299 2235 21 0 0 0 chr1 142949549 142949570 -99714783 + AT_rich Low_complexity Low_complexity 1 21 0 1616 245 40 44 chr1 142949663 142950255 -99714098 - L2 LINE L2 -412 2902 2313 2226 64 0 4 chr1 142950415 142950724 -99713629 + AluSg SINE Alu 1 308 0 205 301 199 13 chr1 142951353 142951509 -99712844 + MIR SINE MIR 47 231 -31 922 188 177 0 chr1 142951724 142951910 -99712443 + MER20 DNA MER1_type 1 219 0 197 273 0 0 chr1 142952047 142952091 -99712262 + MIR SINE MIR 25 68 -140 310 341 128 24 chr1 142952710 142953047 -99711306 - L2 LINE L2 -3 3269 2898 297 319 43 31 chr1 142953719 142953882 -99710471 + MIR SINE MIR 33 197 -65 768 174 72 6 chr1 142955056 142955223 -99709130 + MER97b DNA MER1_type? 1 178 -875 721 242 59 0 chr1 142956413 142956599 -99707754 + MER117 DNA MER1_type 1 197 0 225 337 89 0 chr1 142956631 142956655 -99707698 + MIR SINE MIR 86 106 -156 2092 144 0 0 chr1 142956655 142956967 -99707386 - AluSx SINE Alu 0 312 1 225 337 89 0 chr1 142956967 142957043 -99707310 + MIR SINE MIR 106 195 -67 674 118 164 0 chr1 142958118 142958228 -99706125 + FLAM_C SINE Alu 1 128 -5 186 211 53 53 chr1 142958544 142958601 -99705752 - L2 LINE L2 -9 3304 3248 583 287 110 25 chr1 142958623 142958860 -99705493 - MIR SINE MIR -4 258 2 234 322 6 26 chr1 142959459 142959576 -99704777 - MIR3 SINE MIR -16 192 73 494 284 19 43 chr1 142960068 142960175 -99704178 + MIR SINE MIR 56 159 -103 867 210 17 6 chr1 142960175 142960351 -99704002 - MER5B DNA MER1_type 0 178 1 494 284 19 43 chr1 142960351 142960405 -99703948 + MIR SINE MIR 159 213 -49 187 320 64 48 chr1 142962477 142962602 -99701751 - MIR SINE MIR -63 145 19 468 364 94 26 chr1 142962773 142963368 -99700985 - L2 LINE L2 -4 3268 2627 325 244 192 51 chr1 142963332 142963488 -99700865 + MIR3 SINE MIR 16 193 -15 * 1615 107 24 133 chr1 142964218 142964556 -99699797 + AluYb8 SINE Alu 1 301 -17 373 233 87 10 chr1 142964738 142964841 -99699512 - L2 LINE L2 -1 3312 3202 336 306 68 14 chr1 142965137 142965284 -99699069 + MIR3 SINE MIR 43 197 -11 249 272 76 33 chr1 142965768 142965860 -99698493 + MIR SINE MIR 74 169 -93 515 225 14 78 chr1 142966307 142966449 -99697904 + MER94 DNA DNA 1 133 -1 186 303 26 13 chr1 142966498 142966574 -99697779 - MIR SINE MIR -56 206 130 491 241 133 39 chr1 142966821 142967024 -99697329 + MIR SINE MIR 28 249 -13 205 220 0 40 chr1 142966991 142967041 -99697312 + L2 LINE L2 3221 3268 -4 * 407 308 8 0 chr1 142968008 142968128 -99696225 + MIR3 SINE MIR 63 183 -25 221 232 184 48 chr1 142969625 142969750 -99694603 + MIR3 SINE MIR 25 166 -42 488 243 107 41 chr1 142969885 142970054 -99694299 + L3 LINE CR1 1371 1550 -27 343 284 42 33 chr1 142970141 142970292 -99694061 - MER5B DNA MER1_type 0 178 34 200 273 0 0 chr1 142970410 142970454 -99693899 - L2 LINE L2 0 3272 3229 233 206 27 55 chr1 142970527 142970600 -99693753 + L2 LINE L2 3194 3264 -8 376 285 233 0 chr1 142971313 142971485 -99692868 + MIR SINE MIR 51 262 0 511 211 89 39 chr1 142971583 142971763 -99692590 - L2 LINE L2 0 3313 3125 304 179 18 0 chr1 142972669 142972725 -99691628 + L2 LINE L2 3213 3269 -3 512 337 33 0 chr1 142972959 142973140 -99691213 - MIR SINE MIR -56 206 20 203 311 82 16 chr1 142973381 142973503 -99690850 - MIR3 SINE MIR -21 187 58 2004 121 0 0 chr1 142973819 142974141 -99690212 - AluSx SINE Alu 0 324 3 332 249 6 85 chr1 142975127 142975262 -99689091 + MIR SINE MIR 28 153 -56 234 336 18 0 chr1 142975450 142975563 -99688790 - L1ME LINE L1 -192 5929 5815 1840 84 4 0 chr1 142975577 142975827 -99688526 - AluY SINE Alu 0 311 61 2369 59 0 10 chr1 142976001 142976304 -99688049 + AluY SINE Alu 1 300 -11 232 328 0 0 chr1 142977535 142977599 -99686754 + L2 LINE L2 3191 3254 -18 256 219 24 89 chr1 142977763 142977886 -99686467 + MIR SINE MIR 22 136 -72 816 260 31 4 chr1 142978537 142978764 -99685589 - MIR SINE MIR -16 246 14 417 331 33 2 chr1 142979066 142979255 -99685098 + L1M4 LINE L1 3641 3834 -2312 321 371 43 5 chr1 142980451 142980637 -99683716 + MIR SINE MIR 20 212 -50 194 347 42 0 chr1 142981669 142981741 -99682612 + MIR SINE MIR 111 185 -77 1183 226 50 41 chr1 142982895 142983214 -99681139 - MLT1A1 LTR MaLR -41 324 3 290 321 61 24 chr1 142983306 142983471 -99680882 - L3 LINE CR1 -191 1386 1216 323 309 36 29 chr1 142984034 142984173 -99680180 + MIR SINE MIR 19 158 -104 1735 144 246 0 chr1 142984173 142984535 -99679818 + LTR47A LTR ERVL 1 451 -1 240 226 0 16 chr1 142984536 142984598 -99679755 + MIR SINE MIR 154 214 -48 192 322 11 46 chr1 142984602 142984689 -99679664 - L2 LINE L2 -271 3001 2918 285 405 33 16 chr1 142984769 142985011 -99679342 - L2 LINE L2 -506 2808 2563 285 221 15 29 chr1 142985162 142985230 -99679123 + L2 LINE L2 3205 3271 -1 275 292 180 0 chr1 142986024 142986113 -99678240 - L2 LINE L2 -1 3271 3167 324 259 31 163 chr1 142987058 142987378 -99676975 + L2 LINE L2 2978 3255 -17 186 43 0 0 chr1 142987382 142987405 -99676948 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 198 0 0 0 chr1 142988439 142988461 -99675892 + (A)n Simple_repeat Simple_repeat 1 22 0 316 358 44 0 chr1 142988523 142988660 -99675693 + MIR3 SINE MIR 34 176 -32 2433 31 3 3 chr1 142989122 142989413 -99674940 + L1PA5 LINE L1 5864 6154 0 452 121 0 201 chr1 142990199 142990373 -99673980 - L1MB3 LINE L1 -2 6181 6043 426 314 81 0 chr1 142990573 142990745 -99673608 - MIR SINE MIR -12 250 65 682 327 95 40 chr1 142991569 142992125 -99672228 - L3 LINE CR1 -357 1220 634 268 291 64 0 chr1 142992292 142992402 -99671951 - L2 LINE L2 -3 3269 3153 247 336 54 7 chr1 142992701 142992850 -99671503 + MIR3 SINE MIR 30 185 -23 262 256 240 8 chr1 142993031 142993152 -99671201 - L2 LINE L2 0 3313 3165 487 283 76 20 chr1 142995102 142995300 -99669053 + MIR SINE MIR 29 237 -25 825 182 35 78 chr1 142995645 142995876 -99668477 - MLT1D LTR MaLR -284 221 1 459 271 93 0 chr1 142995876 142996005 -99668348 - MIR SINE MIR -115 147 7 633 186 5 132 chr1 142996177 142996381 -99667972 - MER5B DNA MER1_type 0 178 1 800 239 42 9 chr1 142996758 142996971 -99667382 + MIR SINE MIR 2 221 -41 526 240 203 21 chr1 142999408 142999600 -99664753 + MIR SINE MIR 36 262 0 1653 170 48 21 chr1 143000612 143000901 -99663452 - AluJb SINE Alu -13 299 3 239 290 0 0 chr1 143001670 143001751 -99662602 - MIR SINE MIR -62 146 65 2335 110 3 0 chr1 143002449 143002750 -99661603 + AluSx SINE Alu 1 302 -10 496 311 101 13 chr1 143002815 143003053 -99661300 + MIR SINE MIR 1 259 -3 320 301 186 11 chr1 143003217 143003400 -99660953 + MIR SINE MIR 29 243 -19 437 207 117 23 chr1 143003699 143003839 -99660514 - MIR3 SINE MIR -6 202 44 499 316 103 28 chr1 143003940 143004193 -99660160 - L2 LINE L2 0 3272 3001 616 253 63 17 chr1 143004221 143004395 -99659958 - MIR SINE MIR -73 189 8 272 340 88 40 chr1 143005520 143005920 -99658433 + L2 LINE L2 2557 2975 -339 2277 166 34 5 chr1 143006561 143006970 -99657383 - MER66B LTR ERV1 -65 421 1 248 267 0 40 chr1 143007128 143007203 -99657150 - MER117 DNA MER1_type -30 167 96 371 285 75 38 chr1 143007608 143007794 -99656559 - L2 LINE L2 0 3313 3121 279 350 141 19 chr1 143009174 143009380 -99654973 - L3b LINE CR1 -24 1559 1329 636 178 0 62 chr1 143010692 143010729 -99653624 - L1MB2 LINE L1 -11 6160 6122 2495 92 0 0 chr1 143010729 143011032 -99653321 - AluSx SINE Alu -9 303 1 636 178 0 62 chr1 143011032 143011140 -99653213 - L1MB2 LINE L1 -49 6122 6024 418 203 0 0 chr1 143011144 143011213 -99653140 - Tigger7 DNA MER2_type -14 2573 2505 1312 157 30 25 chr1 143011218 143011454 -99652899 + Tigger5 DNA MER2_type 2 238 -2085 * 1562 119 13 0 chr1 143011445 143011680 -99652673 + Tigger5 DNA MER2_type 2086 2323 0 360 130 0 0 chr1 143011680 143011734 -99652619 - L1M3 LINE L1 -459 5712 5659 1984 91 0 81 chr1 143011748 143012055 -99652298 + AluSx SINE Alu 1 282 -30 282 29 0 0 chr1 143012058 143012093 -99652260 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 513 303 20 13 chr1 143012351 143012503 -99651850 + MIR SINE MIR 48 200 -62 1525 188 132 28 chr1 143012566 143012998 -99651355 + MLT1D LTR MaLR 21 497 -8 924 243 78 9 chr1 143013006 143013224 -99651129 + MIR SINE MIR 25 257 -5 365 239 46 0 chr1 143013512 143013621 -99650732 + MER103 DNA DNA 6 119 -47 727 313 67 22 chr1 143013951 143014354 -99649999 - MER115 DNA AcHobo -270 423 3 619 287 16 9 chr1 143015396 143015642 -99648711 - L1MC4a LINE L1 -360 5810 5691 201 266 9 23 chr1 143015965 143016080 -99648273 + MIR SINE MIR 48 216 -46 2135 112 0 57 chr1 143016080 143016411 -99647942 + AluSx SINE Alu 1 312 0 220 269 65 43 chr1 143016492 143016585 -99647768 - L2 LINE L2 -253 3060 2966 807 268 87 9 chr1 143017021 143017252 -99647101 + MIR SINE MIR 2 250 -12 272 298 78 34 chr1 143017596 143017801 -99646552 - L2 LINE L2 -462 2852 2639 2511 68 3 3 chr1 143018739 143019049 -99645304 - AluY SINE Alu -1 310 1 233 369 63 0 chr1 143019166 143019277 -99645076 + MIR SINE MIR 89 206 -56 1336 226 54 17 chr1 143019333 143019682 -99644671 + MLT1A2 LTR MaLR 2 363 -11 865 282 161 15 chr1 143019763 143020247 -99644106 + L2 LINE L2 2747 3313 0 183 139 333 14 chr1 143020592 143020664 -99643689 - MIR3 SINE MIR -54 154 60 225 93 56 0 chr1 143021358 143021412 -99642941 + (TA)n Simple_repeat Simple_repeat 2 58 0 306 73 0 0 chr1 143021759 143021800 -99642553 + (A)n Simple_repeat Simple_repeat 1 41 0 671 163 108 74 chr1 143022719 143022922 -99641431 - MLT1H LTR MaLR 0 549 340 237 246 0 16 chr1 143023010 143023071 -99641282 - MLT1H LTR MaLR -390 159 100 2169 97 66 0 chr1 143023076 143023365 -99640988 + AluSq SINE Alu 1 308 -5 290 233 39 19 chr1 143023378 143023481 -99640872 - MLT1H LTR MaLR -431 118 14 361 290 37 9 chr1 143024609 143024716 -99639637 - L2 LINE L2 -5 3267 3158 472 260 39 0 chr1 143024769 143024896 -99639457 - MIR3 SINE MIR 0 208 77 463 294 0 0 chr1 143024907 143025016 -99639337 - L2 LINE L2 -4 3309 3201 780 165 11 71 chr1 143025035 143025217 -99639136 - MER5B DNA MER1_type -4 174 4 388 285 91 54 chr1 143025600 143025786 -99638567 - MIR SINE MIR 0 262 70 201 74 0 0 chr1 143026445 143026472 -99637881 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 249 145 241 60 chr1 143027470 143027553 -99636800 - MIR3 SINE MIR -7 201 104 192 195 0 24 chr1 143027616 143027657 -99636696 + L2 LINE L2 3220 3259 -13 239 295 90 0 chr1 143027697 143027775 -99636578 - MIR3 SINE MIR -11 197 113 740 264 100 4 chr1 143027796 143028035 -99636318 - MIR SINE MIR 0 262 1 3341 190 38 50 chr1 143028288 143028773 -99635580 - MER21B LTR ERV1 -48 815 343 1144 126 71 15 chr1 143028773 143028971 -99635382 + L1PA13 LINE L1 5955 6163 0 3341 190 38 50 chr1 143028971 143029299 -99635054 - MER21B LTR ERV1 -520 343 12 277 277 161 9 chr1 143029330 143029442 -99634911 - MIR3 SINE MIR -68 140 12 465 214 9 0 chr1 143030308 143030420 -99633933 - MER103 DNA DNA -42 124 12 602 174 147 6 chr1 143030459 143030619 -99633734 + MER5A DNA MER1_type 4 189 0 1975 131 7 3 chr1 143030865 143031201 -99633152 - AluSx SINE Alu 0 337 1 550 188 27 9 chr1 143031231 143031343 -99633010 + MIR SINE MIR 34 147 -115 339 250 10 52 chr1 143031916 143032012 -99632341 + MIR SINE MIR 48 139 -69 269 230 115 62 chr1 143032878 143032991 -99631362 - MIR SINE MIR -63 145 27 378 286 162 23 chr1 143033299 143033565 -99630788 + LTR16A LTR ERVL 133 435 -15 304 268 52 10 chr1 143033840 143033937 -99630416 - MIR SINE MIR -84 124 24 2504 54 0 19 chr1 143034995 143035308 -99629045 + AluY SINE Alu 1 307 -4 249 33 0 0 chr1 143035529 143035559 -99628794 + (TA)n Simple_repeat Simple_repeat 1 30 0 365 215 9 37 chr1 143035594 143035701 -99628652 + Charlie7 DNA MER1_type 2509 2612 0 1534 176 81 0 chr1 143036029 143036149 -99628204 + AluSx SINE Alu 1 110 -202 270 73 0 0 chr1 143036149 143036190 -99628163 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1534 176 81 0 chr1 143036190 143036353 -99628000 + AluSx SINE Alu 110 307 -5 461 281 122 7 chr1 143037488 143037627 -99626726 - MIR SINE MIR -60 202 48 301 306 67 44 chr1 143037833 143038013 -99626340 + L1ME4a LINE L1 2226 2409 -3975 1010 173 12 12 chr1 143038436 143038609 -99625744 + FAM SINE Alu 3 175 0 578 284 76 78 chr1 143038851 143040001 -99624352 + L1ME4a LINE L1 4908 6056 -301 2239 111 0 9 chr1 143040001 143040316 -99624037 - AluSx SINE Alu 0 312 1 578 284 76 78 chr1 143040316 143040394 -99623959 + L1ME4a LINE L1 6056 6133 -224 1828 121 0 11 chr1 143040492 143040756 -99623597 - AluSx SINE Alu -17 295 35 1315 108 6 0 chr1 143041790 143041966 -99622387 + AluSp SINE Alu 133 309 -4 462 206 8 48 chr1 143042313 143042439 -99621914 - MER105 DNA DNA -56 148 28 2309 116 0 0 chr1 143042862 143043173 -99621180 + AluSx SINE Alu 1 311 -1 330 195 65 13 chr1 143043699 143043776 -99620577 - HAL1 LINE L1 -1620 887 807 196 327 93 31 chr1 143044635 143044797 -99619556 + L2 LINE L2 2584 2755 -559 322 299 243 11 chr1 143044946 143045123 -99619230 - MIR SINE MIR 0 262 45 303 262 255 0 chr1 143046353 143046494 -99617859 + MIR SINE MIR 74 250 -12 281 272 87 0 chr1 143047282 143047374 -99616979 + L2 LINE L2 3142 3241 -31 434 170 11 0 chr1 143052534 143052628 -99611725 + CT-rich Low_complexity Low_complexity 2 96 0 210 317 20 30 chr1 143052891 143052992 -99611361 - L3 LINE CR1 -4 1573 1474 2290 111 0 0 chr1 143055375 143055672 -99608681 + AluY SINE Alu 4 300 -11 2234 65 20 7 chr1 143056061 143056353 -99608000 + AluSc SINE Alu 2 297 -12 2433 89 7 0 chr1 143058180 143058484 -99605869 + AluSg SINE Alu 1 306 -4 2187 105 0 16 chr1 143058518 143058824 -99605529 + AluY SINE Alu 1 301 -10 541 84 21 42 chr1 143059653 143059748 -99604605 - FLAM_A SINE Alu -17 125 33 206 283 89 33 chr1 143059769 143059949 -99604404 + L2 LINE L2 2896 3085 -187 4039 77 54 2 chr1 143060744 143061319 -99603034 - LTR14B LTR ERVK 0 608 4 2068 114 47 7 chr1 143061863 143062160 -99602193 - AluSx SINE Alu -3 309 1 255 279 147 16 chr1 143062433 143062562 -99601791 + L2 LINE L2 3123 3268 -4 366 165 165 0 chr1 143062857 143062936 -99601417 - MER115 DNA AcHobo -5 688 597 635 193 0 0 chr1 143062936 143063050 -99601303 + FLAM_A SINE Alu 13 126 -16 2395 102 0 3 chr1 143063091 143063396 -99600957 + AluSx SINE Alu 1 304 -8 198 0 0 0 chr1 143063396 143063418 -99600935 + (TA)n Simple_repeat Simple_repeat 2 23 0 228 351 82 40 chr1 143064955 143065357 -99598996 + L2 LINE L2 2557 2975 -339 259 267 0 40 chr1 143066245 143066320 -99598033 - MER117 DNA MER1_type -30 167 96 343 285 75 38 chr1 143066725 143066911 -99597442 - L2 LINE L2 0 3313 3121 250 350 141 19 chr1 143068291 143068497 -99595856 - L3b LINE CR1 -24 1559 1329 2467 90 0 0 chr1 143069850 143070149 -99594204 - AluSx SINE Alu -9 303 5 542 301 35 20 chr1 143070316 143070515 -99593838 + MLT1L LTR MaLR 414 615 0 188 211 96 0 chr1 143070655 143070707 -99593646 + MIR SINE MIR 89 145 -63 2275 119 0 0 chr1 143070774 143071077 -99593276 - AluSx SINE Alu -9 303 1 2059 124 28 0 chr1 143072299 143072582 -99591771 + AluSx SINE Alu 1 291 -21 2313 106 10 0 chr1 143072582 143072884 -99591469 + AluSc SINE Alu 1 305 -4 494 248 18 9 chr1 143072884 143072997 -99591356 - MIR SINE MIR -139 123 10 2350 72 3 0 chr1 143123945 143124249 -99540104 - AluY SINE Alu -6 305 1 973 80 36 0 chr1 143124262 143124423 -99539930 - AluY SINE Alu 0 305 140 307 156 0 0 chr1 143124617 143124662 -99539691 - Alu SINE Alu -256 46 2 2298 94 3 0 chr1 143124701 143125010 -99539343 + AluSp SINE Alu 1 310 -3 280 344 11 0 chr1 143125294 143125384 -99538969 + Tigger8 DNA MER2_type 35 125 -541 360 278 40 9 chr1 143126074 143126214 -99538139 - MIR SINE MIR -62 146 19 185 348 14 0 chr1 143128272 143128341 -99536012 + L3b LINE CR1 1173 1242 -341 1098 230 83 94 chr1 143128425 143128630 -99535723 - L1ME3A LINE L1 0 6170 5964 2242 93 0 3 chr1 143128630 143128940 -99535413 - AluSc SINE Alu 0 309 1 1098 230 83 94 chr1 143128940 143129248 -99535105 - L1ME3A LINE L1 -206 5964 5666 412 265 85 11 chr1 143129275 143129464 -99534889 - L1ME3A LINE L1 -644 5520 5318 319 269 39 29 chr1 143129693 143129797 -99534556 + L2 LINE L2 2620 2724 -590 297 335 94 13 chr1 143130020 143130244 -99534109 + L2 LINE L2 2736 2977 -337 232 189 0 38 chr1 143131286 143131339 -99533014 + L1P LINE L1 3993 4043 -2103 260 228 0 0 chr1 143131397 143131454 -99532899 + HsTC2 DNA Tc2 6 62 -1836 21 0 0 0 chr1 143131567 143131588 -99532765 + AT_rich Low_complexity Low_complexity 1 21 0 1305 200 0 4 chr1 143131731 143131976 -99532377 + AluJb SINE Alu 47 290 -22 2064 116 0 0 chr1 143131983 143132294 -99532059 + AluSx SINE Alu 1 311 0 1092 211 54 36 chr1 143132296 143132576 -99531777 + L1MB7 LINE L1 5900 6184 0 2456 170 16 12 chr1 143132594 143133018 -99531335 + MSTB LTR MaLR 1 426 0 668 256 62 14 chr1 143133020 143133231 -99531122 + L2 LINE L2 3092 3312 -1 339 252 69 110 chr1 143133279 143133426 -99530927 + L1M4 LINE L1 4142 4294 -1852 1669 156 23 23 chr1 143133426 143133728 -99530625 + AluJb SINE Alu 1 302 -10 2775 22 0 0 chr1 143133728 143134046 -99530307 + AluYb8 SINE Alu 1 318 0 339 252 69 110 chr1 143134046 143134115 -99530238 + L1M4 LINE L1 4292 4350 -1796 663 193 12 17 chr1 143134226 143134824 -99529529 + GA-rich Low_complexity Low_complexity 1 595 0 540 206 0 0 chr1 143134836 143134972 -99529381 + GA-rich Low_complexity Low_complexity 3 138 0 531 317 80 71 chr1 143135066 143135543 -99528810 + L2 LINE L2 2816 3296 -17 383 298 228 8 chr1 143136347 143136602 -99527751 + L3 LINE CR1 979 1289 -288 484 283 86 16 chr1 143136775 143136962 -99527391 + L3 LINE CR1 1287 1486 -91 2155 116 0 0 chr1 143137526 143137837 -99526516 - AluSx SINE Alu -1 311 1 479 183 9 52 chr1 143138260 143138375 -99525978 + MER105 DNA DNA 28 137 -67 1830 142 10 3 chr1 143138604 143138892 -99525461 - AluJb SINE Alu -11 301 12 311 263 31 29 chr1 143138921 143139221 -99525132 - L1M3a LINE L1 -4785 1265 786 1081 88 0 0 chr1 143139636 143139783 -99524570 + AluSg/x SINE Alu 166 312 0 1287 98 39 97 chr1 143140737 143141216 -99523137 + MER4A LTR ERV1 8 596 -68 2582 101 3 0 chr1 143141320 143141665 -99522688 + pTR5 LTR ERV1 47 392 -2046 480 52 0 0 chr1 143141665 143141723 -99522630 + Alu SINE Alu 238 295 -17 703 148 7 70 chr1 143141724 143141758 -99522595 - MER5A DNA MER1_type -54 135 100 3703 117 18 4 chr1 143141758 143142262 -99522091 + MER9 LTR ERVK 1 511 0 703 148 7 70 chr1 143142262 143142369 -99521984 - MER5A DNA MER1_type -89 100 3 532 268 67 6 chr1 143142369 143142547 -99521806 - MIR SINE MIR -73 189 1 2287 94 3 7 chr1 143142791 143143098 -99521255 + AluY SINE Alu 1 306 -5 1990 141 10 16 chr1 143143846 143144159 -99520194 + AluJb SINE Alu 1 311 -1 1490 180 49 90 chr1 143145132 143145498 -99518855 + MLT1A1 LTR MaLR 4 354 -11 2084 137 3 0 chr1 143145679 143145986 -99518367 - AluY SINE Alu -3 308 1 329 291 39 19 chr1 143146007 143146110 -99518243 - MIR SINE MIR -145 117 13 647 258 102 78 chr1 143146443 143146466 -99517887 + L1ME3A LINE L1 3068 3089 -3057 2349 97 0 7 chr1 143146466 143146776 -99517577 + AluY SINE Alu 1 308 -3 647 258 102 78 chr1 143146776 143147167 -99517186 + L1ME3A LINE L1 3089 3469 -2677 2273 89 3 13 chr1 143147167 143147471 -99516882 + AluSc SINE Alu 1 301 -8 647 258 102 78 chr1 143147471 143147877 -99516476 + L1ME3A LINE L1 3469 3909 -2237 1636 253 63 50 chr1 143147927 143148422 -99515931 + MLT1E LTR MaLR 93 593 0 924 255 97 34 chr1 143148531 143149071 -99515282 + L1ME3A LINE L1 4124 4629 -1535 2349 96 0 6 chr1 143149071 143149383 -99514970 - AluSx SINE Alu -2 310 1 924 255 97 34 chr1 143149383 143150221 -99514132 + L1ME3A LINE L1 4629 5628 -536 503 297 42 76 chr1 143150239 143150687 -99513666 + L1ME3A LINE L1 5723 6155 -15 1937 57 0 0 chr1 143151047 143151274 -99513079 - AluY SINE Alu -1 310 84 556 265 25 31 chr1 143151278 143151440 -99512913 + MIR SINE MIR 47 207 -55 202 128 0 26 chr1 143153985 143154024 -99510329 + (TG)n Simple_repeat Simple_repeat 1 38 0 2200 109 14 0 chr1 143154663 143154957 -99509396 + AluSx SINE Alu 1 298 -14 6438 117 17 52 chr1 143157011 143157201 -99507152 + L1MC1 LINE L1 5135 5330 -1003 579 47 9 112 chr1 143157201 143157271 -99507082 + L1MA5 LINE L1 6204 6261 -39 2362 88 13 3 chr1 143157271 143157576 -99506777 - AluY SINE Alu -3 308 1 579 47 9 112 chr1 143157576 143157612 -99506741 + L1MA5 LINE L1 6261 6299 -1 6438 117 17 52 chr1 143157612 143157980 -99506373 + L1MC1 LINE L1 5330 5709 -624 1762 192 84 50 chr1 143157980 143158141 -99506212 + MSTD LTR MaLR 3 157 -239 1601 159 22 47 chr1 143158141 143158461 -99505892 + AluJo SINE Alu 1 312 0 1762 192 84 50 chr1 143158461 143158679 -99505674 + MSTD LTR MaLR 157 395 -1 6438 117 17 52 chr1 143158679 143159352 -99505001 + L1MC1 LINE L1 5709 6326 -7 201 121 0 0 chr1 143159363 143159396 -99504957 + (GGA)n Simple_repeat Simple_repeat 3 35 0 2497 146 19 19 chr1 143159436 143159869 -99504484 + L1PA16 LINE L1 5716 6148 -18 1163 280 43 15 chr1 143159939 143160268 -99504085 + HAL1 LINE L1 417 754 -1753 441 306 16 0 chr1 143160273 143160397 -99503956 + MER5B DNA MER1_type 6 131 -47 1765 239 38 87 chr1 143160422 143160676 -99503677 - L1MEc LINE L1 -2838 3377 3112 264 30 0 0 chr1 143160676 143160709 -99503644 + (TG)n Simple_repeat Simple_repeat 2 34 0 1765 239 38 87 chr1 143160709 143161441 -99502912 - L1MEc LINE L1 -3103 3112 2459 1276 167 0 5 chr1 143161442 143161673 -99502680 - AluJb SINE Alu 0 313 84 848 257 83 32 chr1 143161713 143162246 -99502107 - L1MEc LINE L1 -3954 2442 1883 577 321 36 0 chr1 143162252 143162529 -99501824 - L1MEc LINE L1 -4598 1798 1512 1997 77 0 8 chr1 143162535 143162783 -99501570 + AluSx SINE Alu 1 246 -66 21 71 0 0 chr1 143163156 143163198 -99501155 + AT_rich Low_complexity Low_complexity 1 42 0 2318 251 115 72 chr1 143163484 143163897 -99500456 - L1ME3A LINE L1 -336 5834 5440 2232 200 44 47 chr1 143163897 143164446 -99499907 - LTR55 LTR ERV -1 547 1 2318 251 115 72 chr1 143164446 143165574 -99498779 - L1ME3A LINE L1 -730 5440 4144 2460 74 0 0 chr1 143165574 143165870 -99498483 + AluY SINE Alu 1 296 -15 2318 251 115 72 chr1 143165870 143166517 -99497836 - L1ME3A LINE L1 -2026 4144 3526 677 226 38 0 chr1 143166518 143166651 -99497702 + FLAM_A SINE Alu 1 138 -4 414 323 68 0 chr1 143166666 143166914 -99497439 - L1ME3A LINE L1 -2605 3541 3277 251 269 196 50 chr1 143167063 143167282 -99497071 + MLT1I LTR MaLR 157 407 -2 935 220 86 21 chr1 143167302 143167675 -99496678 - L1ME3A LINE L1 -2875 3271 2875 1300 133 60 32 chr1 143167685 143167903 -99496450 + AluJo SINE Alu 2 225 -87 234 289 67 19 chr1 143168747 143168851 -99495502 + MIR SINE MIR 46 154 -108 378 210 154 49 chr1 143169001 143169163 -99495190 + LTR16A LTR ERVL 223 401 -49 312 336 0 9 chr1 143169915 143170031 -99494322 + MIR SINE MIR 24 138 -70 7712 22 0 0 chr1 143170733 143171568 -99492785 + L1PA4 LINE L1 5318 6152 -3 235 233 17 17 chr1 143171754 143171814 -99492539 + MLT1K LTR MaLR 183 242 -346 787 128 0 53 chr1 143171944 143172132 -99492221 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 628 55 74 12 chr1 143174052 143174215 -99490138 + (TG)n Simple_repeat Simple_repeat 1 173 0 338 335 80 11 chr1 143174355 143174531 -99489822 + L1MC/D LINE L1 4153 4340 -1806 228 280 61 64 chr1 143175024 143175320 -99489033 + L1P LINE L1 4750 5044 -1102 2209 110 0 0 chr1 143175322 143175613 -99488740 + AluSx SINE Alu 1 291 -21 435 275 189 47 chr1 143175615 143175848 -99488505 + MLT1L LTR MaLR 4 269 -346 240 340 0 0 chr1 143176156 143176206 -99488147 - L2 LINE L2 -96 3176 3127 2141 168 181 68 chr1 143176218 143176477 -99487876 + L1ME2 LINE L1 5419 5647 -517 1153 91 41 71 chr1 143176477 143176621 -99487732 + L1MB2 LINE L1 5979 6117 -54 2290 102 0 0 chr1 143176621 143176915 -99487438 + AluSg1 SINE Alu 1 294 -15 1153 91 41 71 chr1 143176915 143176967 -99487386 + L1MB2 LINE L1 6117 6169 -2 2141 168 181 68 chr1 143176967 143177344 -99487009 + L1ME2 LINE L1 5647 6127 -37 21 36 0 0 chr1 143177600 143177628 -99486725 + AT_rich Low_complexity Low_complexity 1 28 0 265 249 98 87 chr1 143178016 143178293 -99486060 + L1MC/D LINE L1 5297 5576 -2232 298 209 0 15 chr1 143178938 143179005 -99485348 + MIR SINE MIR 187 252 -10 501 180 57 132 chr1 143179304 143179532 -99484821 - L2 LINE L2 0 3313 3103 391 267 118 84 chr1 143179526 143179822 -99484531 - L2 LINE L2 -53 3219 2914 * 2275 92 0 35 chr1 143180215 143180531 -99483822 + AluSx SINE Alu 1 305 -7 718 212 48 53 chr1 143180540 143180729 -99483624 + MLT1K LTR MaLR 378 565 -23 5822 234 25 11 chr1 143181365 143182970 -99481383 + L1M4 LINE L1 2329 3955 -2191 1873 95 48 4 chr1 143183007 143183307 -99481046 + AluSx SINE Alu 1 312 0 284 260 66 75 chr1 143183360 143183587 -99480766 + MLT1L LTR MaLR 313 537 -12 2446 195 57 56 chr1 143183603 143184059 -99480294 + L1M4 LINE L1 2571 3030 -3116 2277 89 0 3 chr1 143184059 143184351 -99480002 + AluSq SINE Alu 1 291 -22 2446 195 57 56 chr1 143184351 143184629 -99479724 + L1M4 LINE L1 3030 3306 -2840 851 248 39 76 chr1 143184629 143184871 -99479482 - MLT1A1 LTR MaLR 0 365 193 2238 116 3 0 chr1 143184871 143185181 -99479172 + AluSx SINE Alu 1 311 -1 851 248 39 76 chr1 143185181 143185365 -99478988 - MLT1A1 LTR MaLR -172 193 4 3544 217 40 41 chr1 143185377 143185577 -99478776 + L1M4 LINE L1 3311 3510 -2636 229 188 0 0 chr1 143185577 143185625 -99478728 + Alu SINE Alu 86 133 0 3544 217 40 41 chr1 143185625 143185693 -99478660 + L1M4 LINE L1 3510 3577 -2569 2295 120 0 0 chr1 143185693 143186001 -99478352 + AluSx SINE Alu 5 312 0 3544 217 40 41 chr1 143186001 143186769 -99477584 + L1M4 LINE L1 3577 4367 -1779 2267 187 86 29 chr1 143186769 143187099 -99477254 + L1M4 LINE L1 4768 5078 -1106 1852 166 0 3 chr1 143187099 143187388 -99476965 - AluJb SINE Alu -24 288 1 2267 187 86 29 chr1 143187388 143187825 -99476528 + L1M4 LINE L1 5078 5600 -584 2305 104 0 13 chr1 143187825 143187997 -99476356 - AluSx SINE Alu -7 305 137 2185 113 0 3 chr1 143187997 143188297 -99476056 - AluSg SINE Alu -11 299 1 2305 104 0 13 chr1 143188297 143188433 -99475920 - AluSx SINE Alu -175 137 1 2267 187 86 29 chr1 143188433 143188573 -99475780 + L1M4 LINE L1 5600 5731 -453 481 13 51 13 chr1 143188673 143188752 -99475601 + (TG)n Simple_repeat Simple_repeat 2 83 0 2197 105 16 0 chr1 143189259 143189565 -99474788 + AluSq SINE Alu 1 311 -2 609 59 39 20 chr1 143189633 143189735 -99474618 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 182 219 395 9 chr1 143191085 143191199 -99473154 + MIR SINE MIR 25 182 -80 615 245 132 8 chr1 143191220 143191390 -99472963 - MIR SINE MIR -9 253 61 347 306 35 28 chr1 143191411 143191555 -99472798 - MIR3 SINE MIR -12 196 52 392 325 16 8 chr1 143192503 143192626 -99471727 - MIR SINE MIR -2 260 137 473 311 7 0 chr1 143192660 143192795 -99471558 - L2 LINE L2 -1 3312 3177 257 191 70 96 chr1 143192878 143192993 -99471360 + MIR SINE MIR 151 262 0 1160 176 161 11 chr1 143193425 143193686 -99470667 - MER7A DNA MER2_type -48 298 1 220 284 125 0 chr1 143194302 143194390 -99469963 + MIR3 SINE MIR 109 207 -1 222 318 78 50 chr1 143194764 143195185 -99469168 - L2 LINE L2 -550 2764 2332 2387 80 0 3 chr1 143195391 143195704 -99468649 - AluSx SINE Alu 0 312 1 2028 105 0 23 chr1 143196489 143196795 -99467558 - AluSc SINE Alu -10 299 1 2277 89 7 0 chr1 143196829 143197133 -99467220 - AluSg SINE Alu -4 306 1 504 89 11 22 chr1 143198514 143198604 -99465749 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 1310 210 53 20 chr1 143198607 143198907 -99465446 - AluJo SINE Alu 0 312 3 456 314 81 0 chr1 143198913 143199085 -99465268 - L2 LINE L2 -568 2746 2561 1581 237 116 13 chr1 143199241 143199697 -99464656 - MLT1J LTR MaLR -2 509 7 276 319 11 0 chr1 143200097 143200188 -99464165 + MIR SINE MIR 21 112 -150 251 283 0 0 chr1 143201260 143201320 -99463033 - MIR SINE MIR -111 151 92 217 281 52 52 chr1 143201495 143201591 -99462762 - MIR SINE MIR -56 152 77 183 162 0 0 chr1 143201921 143201958 -99462395 + (CAT)n Simple_repeat Simple_repeat 2 38 0 531 287 13 33 chr1 143202820 143202970 -99461383 - MIR3 SINE MIR -21 187 41 190 211 19 58 chr1 143203062 143203114 -99461239 + MIR3 SINE MIR 110 159 -49 256 292 10 10 chr1 143203475 143203571 -99460782 - MIR3 SINE MIR -7 201 106 183 204 0 0 chr1 143204375 143204424 -99459929 + CT-rich Low_complexity Low_complexity 2 50 0 412 223 43 0 chr1 143204842 143204936 -99459417 - MER91C DNA MER1_type -42 98 1 222 354 10 10 chr1 143205110 143205206 -99459147 + MIR SINE MIR 15 110 -152 1257 157 0 5 chr1 143205215 143205419 -99458934 - AluJo SINE Alu -109 203 1 225 298 107 30 chr1 143205420 143205551 -99458802 + MIR SINE MIR 122 262 0 269 246 161 8 chr1 143206715 143206845 -99457508 - L2 LINE L2 -553 2761 2612 298 215 20 74 chr1 143207434 143207583 -99456770 + GA-rich Low_complexity Low_complexity 2 142 0 485 269 76 6 chr1 143207979 143208202 -99456151 - MIR SINE MIR -12 250 1 30 45 0 0 chr1 143208635 143208679 -99455674 + AT_rich Low_complexity Low_complexity 1 44 0 1923 96 57 27 chr1 143210144 143210445 -99453908 - AluY SINE Alu -1 310 1 666 159 166 13 chr1 143210649 143210806 -99453547 + MER5A DNA MER1_type 9 189 0 187 188 16 31 chr1 143211558 143211622 -99452731 + (CATA)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr1 143211778 143211799 -99452554 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 143212770 143212793 -99451560 + AT_rich Low_complexity Low_complexity 1 23 0 223 336 45 18 chr1 143213042 143213152 -99451201 - MIR SINE MIR -90 172 60 304 279 88 41 chr1 143213928 143214075 -99450278 + MER5B DNA MER1_type 25 178 0 296 310 43 26 chr1 143214906 143215022 -99449331 - MIR3 SINE MIR -39 169 52 485 282 109 25 chr1 143216166 143216368 -99447985 + MLT1K LTR MaLR 29 247 -341 2219 251 161 21 chr1 143216588 143216771 -99447582 + MER21B LTR ERV1 12 168 -695 1469 135 0 0 chr1 143216771 143216986 -99447367 + AluSg/x SINE Alu 84 298 -12 2219 251 161 21 chr1 143216986 143217479 -99446874 + MER21B LTR ERV1 168 783 -80 269 245 94 28 chr1 143217489 143217595 -99446758 + MLT1K LTR MaLR 467 579 -9 1465 196 136 11 chr1 143217941 143218293 -99446060 - MSTD LTR MaLR 0 396 1 241 305 138 39 chr1 143218490 143218955 -99445398 + L1M4 LINE L1 2110 2620 -3526 2171 68 10 3 chr1 143219045 143219337 -99445016 - AluY SINE Alu -17 294 1 333 224 41 31 chr1 143219453 143219551 -99444802 - LTR30 LTR ERV1 -80 642 544 6544 117 29 24 chr1 143219551 143221196 -99443157 - pTR5 LTR ERV1 0 8399 504 330 180 0 0 chr1 143221192 143221253 -99443100 - HERV9 LTR ERV1 -835 7564 7504 * 807 170 47 47 chr1 143221254 143221554 -99442799 - HERV9 LTR ERV1 -5757 1139 840 30079 96 34 25 chr1 143221555 143227876 -99436477 - HERV9 LTR ERV1 0 2438 1 1056 213 4 9 chr1 143227886 143228116 -99436237 - AluJb SINE Alu -83 229 1 318 125 18 18 chr1 143228120 143228176 -99436177 + MER5A DNA MER1_type 134 189 0 912 158 0 0 chr1 143228809 143228942 -99435411 - FLAM_C SINE Alu 0 133 1 2563 232 28 60 chr1 143229348 143229381 -99434972 + L1MC4 LINE L1 6839 6872 -1170 2077 106 0 0 chr1 143229381 143229686 -99434667 + AluSq SINE Alu 1 305 0 2563 232 28 60 chr1 143229686 143229785 -99434568 + L1MC4 LINE L1 6872 6973 -1069 1728 169 26 3 chr1 143229785 143230087 -99434266 + AluSx SINE Alu 1 309 -3 2563 232 28 60 chr1 143230087 143230799 -99433554 + L1MC4 LINE L1 6973 7890 -152 1984 84 60 21 chr1 143230811 143231096 -99433257 - AluSx SINE Alu -16 296 1 231 196 54 0 chr1 143231102 143231158 -99433195 + L1MC4 LINE L1 7982 8040 -2 832 247 6 0 chr1 143231181 143231351 -99433002 + MIR SINE MIR 22 192 -70 1018 184 99 137 chr1 143231451 143231899 -99432454 - MER110 LTR ERV1 0 491 80 184 231 0 26 chr1 143232058 143232097 -99432256 - MIR SINE MIR -108 154 117 2983 154 17 6 chr1 143232236 143232717 -99431636 - MER66B LTR ERV1 0 486 1 302 266 154 12 chr1 143232875 143233044 -99431309 - L2 LINE L2 -524 2790 2598 368 228 146 29 chr1 143233216 143233387 -99430966 - L1M4 LINE L1 -1578 4568 4378 467 274 80 45 chr1 143234011 143234212 -99430141 - MIR SINE MIR -2 260 53 29 0 0 0 chr1 143235210 143235239 -99429114 + AT_rich Low_complexity Low_complexity 1 29 0 1793 111 92 0 chr1 143235247 143235518 -99428835 - AluSg SINE Alu -14 296 1 285 183 0 0 chr1 143235538 143235598 -99428755 + L1ME4a LINE L1 6060 6119 -2 301 340 174 23 chr1 143235599 143235864 -99428489 + L1ME4a LINE L1 5811 6115 -6 1266 253 186 28 chr1 143235947 143236405 -99427948 - MLT1E LTR MaLR -42 551 22 684 183 8 32 chr1 143236570 143236696 -99427657 + FRAM SINE Alu 1 117 -59 594 272 64 12 chr1 143237358 143237531 -99426822 - L2 LINE L2 -1309 2005 1824 1299 285 89 58 chr1 143237531 143238266 -99426087 + L1ME3A LINE L1 2 772 -5347 2467 54 0 13 chr1 143238266 143238580 -99425773 + AluY SINE Alu 1 310 -1 1299 285 89 58 chr1 143238580 143238767 -99425586 + L1ME3A LINE L1 772 952 -5167 951 276 77 39 chr1 143238805 143239427 -99424926 + L1ME3A LINE L1 2982 3627 -2502 448 186 0 0 chr1 143239453 143239523 -99424830 - MLT1H1 LTR MaLR -282 273 204 258 32 0 0 chr1 143239572 143239603 -99424750 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 261 0 0 0 chr1 143239602 143239631 -99424722 + (GA)n Simple_repeat Simple_repeat 2 30 0 601 218 94 12 chr1 143239646 143239812 -99424541 + MLT1I LTR MaLR 107 275 -134 384 129 29 43 chr1 143239876 143239946 -99424407 + MLT1I LTR MaLR 278 346 -63 348 309 69 7 chr1 143239992 143240267 -99424086 + L1ME3A LINE L1 4416 4707 -1422 * 2480 195 25 15 chr1 143240254 143240773 -99423580 + L1MD2 LINE L1 5624 6147 -212 * 5841 141 46 31 chr1 143240740 143241748 -99422605 + L1M4c LINE L1 1339 2331 -4051 203 0 0 36 chr1 143241748 143241776 -99422577 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2338 75 0 7 chr1 143241778 143242070 -99422283 - AluY SINE Alu -21 290 1 5841 141 46 31 chr1 143242070 143242286 -99422067 + L1M4c LINE L1 2331 2588 -3794 216 0 0 0 chr1 143243841 143243865 -99420488 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 878 264 23 30 chr1 143243868 143244133 -99420220 - L2 LINE L2 -43 3270 3008 1791 202 61 5 chr1 143244162 143244539 -99419814 - MER47B DNA MER2_type -1 417 20 494 289 209 14 chr1 143244544 143244894 -99419459 - L2 LINE L2 -359 2955 2538 316 254 92 0 chr1 143244940 143245082 -99419271 - L2 LINE L2 -679 2635 2481 285 276 115 58 chr1 143245320 143245494 -99418859 - MIR SINE MIR -72 190 7 701 245 135 10 chr1 143245521 143245729 -99418624 - MIR SINE MIR -3 259 26 223 220 0 20 chr1 143246674 143246724 -99417629 - L2 LINE L2 -2 3311 3263 1109 276 73 15 chr1 143246740 143247600 -99416753 + L1ME3A LINE L1 4730 5642 -505 991 185 0 17 chr1 143247642 143247820 -99416533 + FRAM SINE Alu 1 175 -1 473 260 33 6 chr1 143247821 143248017 -99416336 + L1ME3A LINE L1 5677 5887 -266 1415 216 97 70 chr1 143248018 143248546 -99415807 - MLT1F LTR MaLR 0 542 1 3771 225 60 50 chr1 143248919 143250137 -99414216 - HAL1 LINE L1 -91 2416 1187 845 182 11 40 chr1 143250138 143250314 -99414039 - FRAM SINE Alu -6 170 1 519 197 215 52 chr1 143250314 143250644 -99413709 - HAL1 LINE L1 -1317 1190 807 196 327 93 31 chr1 143251503 143251665 -99412688 + L2 LINE L2 2584 2755 -559 354 298 212 17 chr1 143251814 143252030 -99412323 - MIR SINE MIR 0 262 7 210 321 77 48 chr1 143252975 143253184 -99411169 + L2 LINE L2 2716 2930 -384 303 277 255 0 chr1 143253221 143253362 -99410991 + MIR SINE MIR 74 250 -12 307 261 87 0 chr1 143254150 143254242 -99410111 + L2 LINE L2 3142 3241 -31 264 348 111 0 chr1 143255527 143255708 -99408645 + MIR3 SINE MIR 8 208 0 181 152 0 0 chr1 143256189 143256222 -99408131 - MIR SINE MIR -67 141 109 434 170 11 0 chr1 143259470 143259564 -99404789 + CT-rich Low_complexity Low_complexity 2 96 0 232 305 19 38 chr1 143259827 143259932 -99404421 - L3 LINE CR1 -4 1573 1471 2285 111 0 0 chr1 143262316 143262613 -99401740 + AluY SINE Alu 4 300 -11 2421 68 3 3 chr1 143263003 143263299 -99401054 + AluSc SINE Alu 2 297 -12 325 254 0 14 chr1 143264107 143264178 -99400175 + L2 LINE L2 3203 3272 0 227 273 13 13 chr1 143264340 143264417 -99399936 - L2 LINE L2 -290 2982 2906 181 237 0 105 chr1 143264505 143264581 -99399772 + L3b LINE CR1 1345 1412 -171 498 192 67 10 chr1 143264785 143264889 -99399464 + MIR SINE MIR 117 226 -36 2089 106 0 42 chr1 143265262 143265574 -99398779 + AluSq SINE Alu 1 299 -14 249 33 0 0 chr1 143266151 143266181 -99398172 + (TG)n Simple_repeat Simple_repeat 2 31 0 1729 199 71 19 chr1 143266514 143266935 -99397418 + L1ME1 LINE L1 5716 6158 -8 26 0 0 0 chr1 143266944 143266970 -99397383 + AT_rich Low_complexity Low_complexity 1 26 0 448 290 75 90 chr1 143267319 143267572 -99396781 - L1MC4a LINE L1 -1755 6053 5805 2064 68 25 114 chr1 143267572 143267896 -99396457 + AluSc SINE Alu 1 295 -14 448 290 75 90 chr1 143267896 143267977 -99396376 - L1MC4a LINE L1 -2003 5805 5724 270 265 163 0 chr1 143268231 143268329 -99396024 - L2 LINE L2 -2 3270 3157 184 246 77 31 chr1 143268560 143268625 -99395728 - L2 LINE L2 -214 3058 2991 405 319 106 46 chr1 143268689 143269144 -99395209 - L2 LINE L2 -688 2626 2145 231 184 0 0 chr1 143269783 143269821 -99394532 + MER58 DNA MER1_type 2383 2420 0 2430 93 0 0 chr1 143273131 143273431 -99390922 + AluSg SINE Alu 1 300 -10 2389 89 3 3 chr1 143273445 143273749 -99390604 + AluSg SINE Alu 1 304 -6 275 290 0 0 chr1 143275701 143275763 -99388590 - L3 LINE CR1 -2 1575 1514 257 299 98 65 chr1 143276400 143276584 -99387769 - L2 LINE L2 -221 3051 2862 2082 129 11 0 chr1 143277364 143277651 -99386702 + AluSx SINE Alu 1 290 -22 5031 165 57 41 chr1 143277755 143278952 -99385401 - Tigger3b DNA MER2_type -14 1217 2 619 126 117 0 chr1 143279101 143279212 -99385141 - LTR47A LTR ERVL -68 384 261 377 252 39 103 chr1 143279672 143279722 -99384631 - L1MC4a LINE L1 -910 5449 5397 2206 120 7 0 chr1 143279722 143280021 -99384332 + AluSx SINE Alu 1 301 -11 377 252 39 103 chr1 143280021 143280125 -99384228 - L1MC4a LINE L1 -962 5397 5305 269 336 60 7 chr1 143280217 143280366 -99383987 - L3b LINE CR1 -122 1461 1305 1073 318 88 8 chr1 143280679 143280740 -99383613 + L2 LINE L2 2142 2197 -1117 2358 109 3 0 chr1 143280740 143281043 -99383310 - AluSx SINE Alu -1 311 8 1073 318 88 8 chr1 143281043 143281449 -99382904 + L2 LINE L2 2197 2646 -668 319 179 0 0 chr1 143281772 143281828 -99382525 - MER3 DNA MER1_type -118 91 36 189 272 43 43 chr1 143281954 143282046 -99382307 + L2 LINE L2 2799 2890 -424 946 196 89 8 chr1 143282632 143282867 -99381486 - MER113 DNA MER1_type? -133 388 135 1511 153 3 81 chr1 143282936 143283244 -99381109 - AluJo SINE Alu -17 295 12 330 277 50 0 chr1 143283261 143283362 -99380991 - MER113 DNA MER1_type? -415 106 1 656 275 102 16 chr1 143285848 143286161 -99378192 - L2 LINE L2 -848 2466 2127 3039 156 12 26 chr1 143286349 143286931 -99377422 + L1MB8 LINE L1 5595 6168 -10 322 277 47 14 chr1 143287009 143287157 -99377196 + L2 LINE L2 2832 2984 -329 2070 124 0 0 chr1 143487321 143487637 -99176716 + AluSx SINE Alu 1 316 0 1702 146 44 37 chr1 143487647 143487941 -99176412 + AluJo SINE Alu 1 296 -16 791 131 0 31 chr1 143488100 143488230 -99176123 - FLAM_C SINE Alu -7 126 1 715 232 62 26 chr1 143488383 143488577 -99175776 + MIR SINE MIR 43 243 -19 188 273 0 0 chr1 143490187 143490231 -99174122 + L2 LINE L2 3209 3252 -20 203 240 53 40 chr1 143491165 143491240 -99173113 - MIR SINE MIR -115 93 18 192 271 214 0 chr1 143492174 143492244 -99172109 + L2 LINE L2 3188 3272 0 352 274 47 36 chr1 143492956 143493135 -99171218 - MIR3 SINE MIR -67 141 3 245 321 146 38 chr1 143494562 143494849 -99169504 + L2 LINE L2 2946 3263 -9 887 98 0 0 chr1 143494849 143494982 -99169371 + L1MB3 LINE L1 6043 6175 -8 2374 74 7 0 chr1 143495008 143495293 -99169060 + AluSg SINE Alu 1 287 -23 325 243 0 0 chr1 143495434 143495504 -99168849 - L2 LINE L2 -9 3263 3194 430 267 52 0 chr1 143496279 143496395 -99167958 - MIR3 SINE MIR -37 171 50 2246 92 0 27 chr1 143496397 143496692 -99167661 - AluSx SINE Alu -21 291 5 2352 99 3 0 chr1 143496696 143496999 -99167354 - AluSx SINE Alu -8 304 1 1680 179 43 13 chr1 143497066 143497259 -99167094 - AluJb SINE Alu -1 311 104 342 0 0 0 chr1 143497259 143497297 -99167056 + (TTA)n Simple_repeat Simple_repeat 3 40 0 1680 179 43 13 chr1 143497297 143497404 -99166949 - AluJb SINE Alu -208 104 2 222 37 0 0 chr1 143497457 143497484 -99166869 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 303 93 0 0 chr1 143497483 143497526 -99166827 + (CA)n Simple_repeat Simple_repeat 1 43 0 252 0 0 0 chr1 143497525 143497553 -99166800 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 228 229 21 0 chr1 143497876 143497924 -99166429 - L2 LINE L2 -20 3252 3204 1234 218 155 51 chr1 143497929 143498037 -99166316 - MER34C LTR ERV1 0 585 490 2920 150 18 61 chr1 143498037 143498320 -99166033 - MER7C DNA MER2_type -2426 602 308 2201 107 28 0 chr1 143498320 143498611 -99165742 + AluSx SINE Alu 5 303 -9 2920 150 18 61 chr1 143498611 143498736 -99165617 - MER7C DNA MER2_type -2720 308 179 1962 158 7 16 chr1 143498736 143499046 -99165307 - AluJb SINE Alu -5 307 1 2920 150 18 61 chr1 143499046 143499263 -99165090 - MER7C DNA MER2_type -2849 179 3 1234 218 155 51 chr1 143499263 143499682 -99164671 - MER34C LTR ERV1 -95 490 3 453 322 137 10 chr1 143499840 143500353 -99164000 + L2 LINE L2 1872 2534 -780 249 232 133 119 chr1 143500400 143500434 -99163919 + MIR SINE MIR 4 36 -226 2330 118 0 6 chr1 143500434 143500747 -99163606 + AluSx SINE Alu 1 311 -1 2383 78 3 23 chr1 143500747 143501053 -99163300 + AluY SINE Alu 1 300 -11 249 232 133 119 chr1 143501053 143501168 -99163185 + MIR SINE MIR 35 156 -106 2413 94 0 0 chr1 143501993 143502301 -99162052 - AluSx SINE Alu -4 308 1 316 347 106 19 chr1 143502301 143502909 -99161444 + L2 LINE L2 2581 3242 -30 453 212 11 123 chr1 143503720 143503899 -99160454 - MER5A DNA MER1_type -30 159 1 1851 124 57 25 chr1 143504978 143505261 -99159092 + AluJb SINE Alu 5 296 -16 1485 170 61 0 chr1 143505272 143505519 -99158834 - AluJb SINE Alu -44 268 7 200 35 35 0 chr1 143505589 143505618 -99158735 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 2323 55 55 14 chr1 143505962 143506255 -99158098 + AluY SINE Alu 1 305 -6 375 218 82 126 chr1 143506549 143507049 -99157304 - L1MC5 LINE L1 -183 7778 7301 1336 157 0 14 chr1 143507054 143507264 -99157089 + AluJb SINE Alu 94 300 -12 2303 106 0 7 chr1 143507271 143507572 -99156781 + AluSx SINE Alu 5 303 -9 485 290 46 39 chr1 143507812 143508045 -99156308 - L1MC4 LINE L1 -737 7224 7021 424 262 0 33 chr1 143508261 143508383 -99155970 - MIR SINE MIR -44 218 101 2563 66 3 3 chr1 143508617 143508922 -99155431 + AluSp SINE Alu 1 305 -8 252 164 218 0 chr1 143509464 143509519 -99154834 + MER94 DNA DNA 1 67 -67 302 252 9 84 chr1 143510139 143510246 -99154107 + MIR SINE MIR 92 190 -72 2229 99 10 3 chr1 143514318 143514611 -99149742 + AluSx SINE Alu 1 295 -17 2055 151 3 3 chr1 143515245 143515556 -99148797 - AluSx SINE Alu -1 311 1 205 299 131 9 chr1 143515803 143515910 -99148443 + L2 LINE L2 2625 2744 -570 6813 68 16 44 chr1 143516645 143517834 -99146519 - SVA Other Other -551 1386 433 1279 59 25 50 chr1 143517862 143518100 -99146253 - SVA Other Other -520 866 635 2773 242 35 35 chr1 143518125 143519033 -99145320 - SVA Other Other -520 866 61 22 0 0 0 chr1 143519105 143519127 -99145226 + AT_rich Low_complexity Low_complexity 1 22 0 1907 204 69 9 chr1 143519363 143519597 -99144756 - MER34 LTR ERV1 -1 541 322 2125 141 0 0 chr1 143519597 143519901 -99144452 + AluJb SINE Alu 1 304 -8 1907 204 69 9 chr1 143519901 143520102 -99144251 - MER34 LTR ERV1 -220 322 80 2263 97 0 37 chr1 143520102 143520423 -99143930 - AluSx SINE Alu -3 309 1 455 50 0 0 chr1 143520423 143520483 -99143870 - AluSq/x SINE Alu -176 137 78 1310 178 0 9 chr1 143520483 143520697 -99143656 - AluSx SINE Alu -100 212 1 * 1315 139 5 0 chr1 143520697 143520890 -99143463 + AluJo SINE Alu 104 297 -15 552 191 134 97 chr1 143520905 143521218 -99143135 - MLT1A2 LTR MaLR 0 365 1 33 0 0 0 chr1 143522147 143522180 -99142173 + GC_rich Low_complexity Low_complexity 1 33 0 459 254 66 8 chr1 143523436 143523558 -99140795 - MIR SINE MIR -63 145 17 216 315 99 18 chr1 143526586 143526697 -99137656 - L2 LINE L2 -3 3269 3150 492 296 128 66 chr1 143527221 143527887 -99136466 - L2 LINE L2 -5 3267 2550 395 301 92 31 chr1 143527962 143528125 -99136228 + MIR3 SINE MIR 25 197 -11 548 161 152 9 chr1 143529567 143529679 -99134674 + FLAM_A SINE Alu 1 128 -5 915 156 7 0 chr1 143529681 143529816 -99134537 + AluJb SINE Alu 1 136 -176 698 249 127 0 chr1 143529946 143530167 -99134186 - MIR SINE MIR -2 260 12 2107 106 7 40 chr1 143530465 143530766 -99133587 - AluJo SINE Alu -10 302 12 482 229 108 102 chr1 143530777 143530943 -99133410 - MIR SINE MIR -66 196 30 2235 102 3 10 chr1 143530954 143531259 -99133094 - AluSx SINE Alu -9 303 1 1799 165 0 20 chr1 143532324 143532627 -99131726 - AluJb SINE Alu -15 297 1 227 353 33 25 chr1 143532627 143532749 -99131604 - L2 LINE L2 -10 3262 3140 1041 130 43 72 chr1 143532818 143533026 -99131327 + AluJo SINE Alu 6 207 -105 752 164 0 0 chr1 143533604 143533732 -99130621 - FLAM_A SINE Alu -4 129 2 200 196 0 18 chr1 143533896 143533952 -99130401 + (TA)n Simple_repeat Simple_repeat 2 56 0 293 318 110 85 chr1 143534113 143534349 -99130004 - L2 LINE L2 0 3272 3031 622 279 28 21 chr1 143534498 143534677 -99129676 + L1ME4a LINE L1 5652 5835 -286 2364 81 27 0 chr1 143534677 143534973 -99129380 - AluSc SINE Alu -5 304 1 622 279 28 21 chr1 143534973 143535080 -99129273 + L1ME4a LINE L1 5835 5940 -181 1303 156 14 31 chr1 143535082 143535370 -99128983 + L1M4 LINE L1 4388 4670 -1476 2021 130 0 4 chr1 143535370 143535646 -99128707 + AluSx SINE Alu 1 275 -37 6124 130 118 40 chr1 143535775 143536107 -99128246 + Tigger2 DNA MER2_type 806 1110 -1608 2158 119 30 13 chr1 143536107 143536409 -99127944 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr1 143536409 143536430 -99127923 + (GA)n Simple_repeat Simple_repeat 2 22 0 6124 130 118 40 chr1 143536430 143536854 -99127499 + Tigger2 DNA MER2_type 1110 1499 -1219 2503 68 3 0 chr1 143536854 143537150 -99127203 + AluSc SINE Alu 1 297 -12 6124 130 118 40 chr1 143537150 143537478 -99126875 + Tigger2 DNA MER2_type 1499 1800 -918 2546 80 3 0 chr1 143537478 143537789 -99126564 + AluSp SINE Alu 1 312 -1 6124 130 118 40 chr1 143537789 143537933 -99126420 + Tigger2 DNA MER2_type 1800 2134 -584 401 250 31 0 chr1 143538555 143538651 -99125702 - L2 LINE L2 -16 3256 3158 528 291 300 21 chr1 143538871 143539208 -99125145 + L2 LINE L2 2842 3272 0 200 379 58 10 chr1 143541877 143541980 -99122373 - L3 LINE CR1 -28 1549 1442 2214 123 3 0 chr1 143542027 143542319 -99122034 + AluSx SINE Alu 1 293 -19 2353 93 7 3 chr1 143542320 143542622 -99121731 + AluSq SINE Alu 1 303 -10 372 246 157 17 chr1 143542671 143542727 -99121626 + L1MC/D LINE L1 5216 5263 -904 850 226 0 7 chr1 143542727 143542882 -99121471 + FRAM SINE Alu 4 157 -9 372 246 157 17 chr1 143542882 143543015 -99121338 + L1MC/D LINE L1 5263 5424 -743 232 224 165 12 chr1 143543198 143543283 -99121070 + L1MC/D LINE L1 5687 5784 -2024 1974 122 45 7 chr1 143543365 143543653 -99120700 + AluSx SINE Alu 1 299 -13 2093 107 41 3 chr1 143543763 143544054 -99120299 + AluSx SINE Alu 1 302 -10 195 42 0 0 chr1 143544120 143544144 -99120209 + (T)n Simple_repeat Simple_repeat 1 24 0 1249 190 40 71 chr1 143544163 143544637 -99119716 - LTR27 LTR ERV1 -1 635 249 2389 60 3 3 chr1 143544637 143544960 -99119393 + AluY SINE Alu 1 323 0 1249 190 40 71 chr1 143544960 143545067 -99119286 - LTR27 LTR ERV1 -387 249 140 594 127 68 59 chr1 143545170 143545288 -99119065 - LTR28 LTR ERV1 -900 120 2 1367 177 99 4 chr1 143545288 143545531 -99118822 - AluJo SINE Alu -40 272 7 749 225 38 6 chr1 143545598 143545758 -99118595 + FRAM SINE Alu 1 165 -1 2278 97 0 7 chr1 143545928 143546227 -99118126 - AluSc SINE Alu -4 305 9 1426 79 0 0 chr1 143546261 143546439 -99117914 - AluSq SINE Alu -2 311 134 2198 102 17 7 chr1 143546439 143546734 -99117619 - AluSx SINE Alu -14 298 1 2255 100 7 7 chr1 143547656 143547956 -99116397 + AluSx SINE Alu 1 300 -12 2488 81 0 0 chr1 143548103 143548399 -99115954 + AluY SINE Alu 1 296 -15 2238 102 0 7 chr1 143548412 143548707 -99115646 + AluY SINE Alu 1 293 -18 2388 75 3 0 chr1 143548828 143549120 -99115233 + AluSg SINE Alu 3 295 -15 2281 87 0 26 chr1 143549219 143549529 -99114824 + AluSc SINE Alu 1 302 -7 826 144 0 0 chr1 143549764 143549882 -99114471 + AluSp SINE Alu 1 118 -195 723 267 59 5 chr1 143549883 143550085 -99114268 + MIR SINE MIR 23 235 -27 758 142 0 0 chr1 143551302 143551415 -99112938 - AluSp/q SINE Alu -14 299 187 2558 139 98 26 chr1 143551518 143551827 -99112526 + Tigger2 DNA MER2_type 2148 2512 -206 2280 108 0 0 chr1 143551827 143552123 -99112230 - AluSq SINE Alu -17 296 1 2558 139 98 26 chr1 143552123 143552346 -99112007 + Tigger2 DNA MER2_type 2512 2718 0 1128 239 74 62 chr1 143552655 143552994 -99111359 - MER2 DNA MER2_type -1 343 1 592 262 0 8 chr1 143553194 143553320 -99111033 + FLAM_A SINE Alu 1 125 -8 189 382 66 7 chr1 143553325 143553461 -99110892 + L3 LINE CR1 938 1081 -496 248 388 100 0 chr1 143553480 143553640 -99110713 + L3 LINE CR1 1369 1544 -33 2458 72 0 13 chr1 143554321 143554626 -99109727 - AluY SINE Alu -10 301 1 1789 168 25 0 chr1 143554839 143555125 -99109228 - AluJo SINE Alu -11 301 9 426 293 41 20 chr1 143555223 143555370 -99108983 + MIR SINE MIR 37 186 -76 2556 40 3 17 chr1 143555730 143556030 -99108323 - AluY SINE Alu -15 296 1 673 201 0 22 chr1 143556205 143556339 -99108014 + FLAM_A SINE Alu 1 131 -2 21 0 0 0 chr1 143556355 143556376 -99107977 + AT_rich Low_complexity Low_complexity 1 21 0 2062 117 10 19 chr1 143556739 143557046 -99107307 + AluSx SINE Alu 1 304 -8 1593 178 60 7 chr1 143557084 143557365 -99106988 + AluJo SINE Alu 5 300 -12 1779 102 113 22 chr1 143558229 143558503 -99105850 + AluSg1 SINE Alu 1 299 -10 1450 186 69 4 chr1 143558611 143558885 -99105468 + AluJo SINE Alu 1 292 -20 1713 125 12 27 chr1 143558889 143559145 -99105208 + AluSx SINE Alu 38 289 -23 2224 106 3 7 chr1 143559213 143559505 -99104848 + AluSp SINE Alu 1 291 -22 2252 99 3 16 chr1 143559662 143559965 -99104388 + AluSp SINE Alu 1 299 -14 2124 70 0 86 chr1 143560182 143560497 -99103856 - AluY SINE Alu -23 288 1 2210 104 30 3 chr1 143560541 143560839 -99103514 + AluSg SINE Alu 2 307 -3 2521 87 0 3 chr1 143561646 143561957 -99102396 + AluSx SINE Alu 1 310 -2 1944 97 8 8 chr1 143562847 143563114 -99101239 - AluY SINE Alu -44 267 1 2256 115 3 0 chr1 143563117 143563412 -99100941 - AluSx SINE Alu -16 296 1 2271 83 14 3 chr1 143563422 143563712 -99100641 - AluSg SINE Alu -17 293 1 1083 150 0 6 chr1 143563819 143563986 -99100367 - AluSq SINE Alu -12 301 136 2056 125 0 3 chr1 143563988 143564276 -99100077 - AluSc SINE Alu -22 287 1 1442 168 0 9 chr1 143564662 143564888 -99099465 + AluJo SINE Alu 70 293 -19 2191 117 3 19 chr1 143564915 143565232 -99099121 - AluSx SINE Alu 0 312 1 1707 199 20 7 chr1 143565400 143565706 -99098647 + AluJb SINE Alu 1 310 -2 2385 113 7 0 chr1 143565719 143566029 -99098324 + AluSx SINE Alu 1 312 0 1871 165 7 7 chr1 143566113 143566416 -99097937 + AluSx SINE Alu 1 303 -9 5953 57 28 17 chr1 143566613 143567438 -99096915 + SVA Other Other 1 834 -552 1645 204 30 8 chr1 143567551 143567879 -99096474 - MER82 DNA MER2_type -281 372 34 2408 78 3 0 chr1 143567879 143568172 -99096181 + AluSc SINE Alu 6 299 -10 1645 204 30 8 chr1 143568172 143568206 -99096147 - MER82 DNA MER2_type -619 34 2 2324 100 0 7 chr1 143568815 143569116 -99095237 + AluSx SINE Alu 1 299 -13 1285 217 155 3 chr1 143569117 143569491 -99094862 + MLT1C LTR MaLR 34 464 -3 221 0 0 33 chr1 143569881 143569911 -99094442 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 810 144 0 0 chr1 143569911 143570029 -99094324 - AluJb SINE Alu -194 118 1 262 330 137 52 chr1 143570311 143570523 -99093830 - L2 LINE L2 -5 3267 3038 185 146 125 21 chr1 143570787 143570835 -99093518 + L2 LINE L2 1658 1710 -1604 351 234 21 0 chr1 143570838 143570932 -99093421 + L1MA10 LINE L1 6230 6325 -9 2407 84 0 10 chr1 143571982 143572291 -99092062 + AluSx SINE Alu 1 306 -6 242 322 82 7 chr1 143572497 143572643 -99091710 - MIR SINE MIR -29 233 77 2614 37 3 0 chr1 143573842 143574138 -99090215 + AluSx SINE Alu 2 298 -14 408 216 0 0 chr1 143574723 143574797 -99089556 + L2 LINE L2 3236 3309 -4 2238 98 0 3 chr1 143575023 143575318 -99089035 - AluY SINE Alu -17 294 1 2415 86 3 0 chr1 143575318 143575620 -99088733 - AluSp SINE Alu -10 303 1 1430 142 60 0 chr1 143575758 143575976 -99088377 - AluSx SINE Alu -81 231 1 203 256 195 12 chr1 143576123 143576205 -99088148 + MIR SINE MIR 71 167 -95 290 280 68 45 chr1 143576245 143576377 -99087976 + L2 LINE L2 3124 3258 -55 215 278 19 0 chr1 143576373 143576427 -99087926 + MIR SINE MIR 158 212 -50 * 2591 68 3 0 chr1 143576640 143576950 -99087403 + AluY SINE Alu 1 311 0 352 379 85 0 chr1 143577462 143577710 -99086643 + L2 LINE L2 3004 3272 0 360 227 53 38 chr1 143578414 143578546 -99085807 - MLT1K LTR MaLR -329 259 126 2276 125 3 0 chr1 143578586 143578897 -99085456 - AluSq SINE Alu -1 312 1 194 365 0 14 chr1 143580008 143580082 -99084271 - L2 LINE L2 -78 3194 3122 2233 127 0 0 chr1 143580138 143580437 -99083916 + AluSq SINE Alu 1 299 -14 2258 114 7 0 chr1 143580443 143580749 -99083604 + AluSx SINE Alu 1 308 -4 2296 129 3 0 chr1 143580769 143581080 -99083273 + AluSx SINE Alu 1 312 0 805 260 94 18 chr1 143581219 143581496 -99082857 - L2 LINE L2 -1 3312 3015 2286 134 54 52 chr1 143582259 143582683 -99081670 - MSTB LTR MaLR -1 425 1 2291 99 0 26 chr1 143582827 143583140 -99081213 + AluSx SINE Alu 1 305 -7 1319 175 36 16 chr1 143583208 143583511 -99080842 + L1ME2 LINE L1 4680 4988 -1158 753 246 12 53 chr1 143583515 143583759 -99080594 + L1MC5 LINE L1 6638 6871 -1090 498 235 73 28 chr1 143583764 143583943 -99080410 + L1M4 LINE L1 2232 2418 -3728 547 217 14 0 chr1 143583944 143584082 -99080271 + L1ME2 LINE L1 5770 5909 -255 476 103 15 0 chr1 143584112 143584180 -99080173 + Alu SINE Alu 2 70 -248 613 173 64 77 chr1 143584307 143584527 -99079826 + L1ME2 LINE L1 5926 6142 -22 1952 140 18 0 chr1 143584529 143584815 -99079538 - AluSx SINE Alu -21 291 1 431 306 23 50 chr1 143584875 143585094 -99079259 + L1MC4 LINE L1 7829 8041 -1 697 206 88 10 chr1 143585115 143585319 -99079034 + L1MC5 LINE L1 7698 7917 -44 2375 104 0 0 chr1 143585389 143585696 -99078657 + AluSc SINE Alu 1 307 -2 890 195 96 53 chr1 143585847 143586305 -99078048 - MLT1D LTR MaLR 0 505 6 612 188 45 23 chr1 143586305 143586438 -99077915 - L2 LINE L2 -433 2881 2746 1924 175 13 0 chr1 143586478 143586786 -99077567 + AluJb SINE Alu 1 312 0 780 152 0 0 chr1 143586786 143586898 -99077455 - AluJo/FLAM SINE Alu -199 113 2 1151 293 57 58 chr1 143586898 143587157 -99077196 - HERV16 LTR ERVL -2118 2878 2620 2163 92 16 20 chr1 143587157 143587463 -99076890 - AluSq SINE Alu -8 305 1 1151 293 57 58 chr1 143587463 143587809 -99076544 - HERV16 LTR ERVL -2376 2620 2233 1047 151 11 22 chr1 143587854 143588033 -99076320 - FRAM SINE Alu 0 176 1 1206 330 12 12 chr1 143588033 143588499 -99075854 - HERV16 LTR ERVL -2848 2148 1739 1334 131 5 5 chr1 143588530 143588721 -99075632 - AluSx SINE Alu -121 191 1 685 325 81 59 chr1 143588722 143589463 -99074890 - HERV16 LTR ERVL -3876 1120 364 2399 118 0 0 chr1 143589885 143590198 -99074155 - AluSq SINE Alu 0 313 1 2538 80 0 3 chr1 143590200 143590512 -99073841 - AluY SINE Alu 0 311 1 366 143 0 0 chr1 143590572 143590635 -99073718 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 2273 117 7 3 chr1 143590635 143590944 -99073409 - AluSg SINE Alu 0 310 1 240 181 125 14 chr1 143591096 143591168 -99073185 + L2 LINE L2 3222 3301 -12 1852 130 4 11 chr1 143591202 143591479 -99072874 - AluJo SINE Alu -27 285 11 1676 127 8 16 chr1 143592562 143592806 -99071547 + AluSq SINE Alu 1 242 -71 715 194 0 0 chr1 143592906 143593050 -99071303 + AluYa5 SINE Alu 163 306 -5 310 330 89 0 chr1 143593113 143593225 -99071128 - L2 LINE L2 0 3272 3151 512 269 21 14 chr1 143593363 143593504 -99070849 - MIR SINE MIR -115 147 6 1240 186 26 63 chr1 143594294 143594563 -99069790 - AluJb SINE Alu -22 290 32 1679 255 127 28 chr1 143594728 143595249 -99069104 + L2 LINE L2 1676 2291 -1023 2257 125 0 0 chr1 143595249 143595552 -99068801 - AluSx SINE Alu -9 303 1 1679 255 127 28 chr1 143595552 143595756 -99068597 + L2 LINE L2 2291 2473 -841 4823 94 56 103 chr1 143595788 143596061 -99068292 - Tigger3b DNA MER2_type -1797 1231 947 1594 151 60 37 chr1 143596061 143596359 -99067994 + AluJb SINE Alu 2 306 -6 4823 94 56 103 chr1 143596359 143596633 -99067720 - Tigger3b DNA MER2_type -2081 947 661 1709 114 31 92 chr1 143596633 143596950 -99067403 - AluJo SINE Alu -14 298 1 2560 65 0 7 chr1 143596954 143597261 -99067092 - AluY SINE Alu -6 305 1 4823 94 56 103 chr1 143597261 143597282 -99067071 - Tigger3b DNA MER2_type -2370 658 638 1844 179 7 0 chr1 143597282 143597579 -99066774 - AluJb SINE Alu -12 300 2 4823 94 56 103 chr1 143597579 143597593 -99066760 - Tigger3b DNA MER2_type -2390 638 625 2370 89 0 3 chr1 143597593 143597895 -99066458 - AluSc SINE Alu -8 301 1 4823 94 56 103 chr1 143597895 143598108 -99066245 - Tigger3b DNA MER2_type -2403 625 403 1603 110 0 23 chr1 143598108 143598273 -99066080 - AluSq SINE Alu -15 298 131 242 0 61 0 chr1 143598273 143598306 -99066047 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2479 56 0 3 chr1 143598306 143598591 -99065762 - AluY SINE Alu -27 284 1 1603 110 0 23 chr1 143598591 143598642 -99065711 - AluSq SINE Alu -180 133 86 4823 94 56 103 chr1 143598642 143598843 -99065510 - Tigger3b DNA MER2_type -2625 403 274 485 228 10 10 chr1 143598842 143598943 -99065410 - Tigger3b DNA MER2_type -1130 101 1 * 898 174 46 67 chr1 143598943 143599338 -99065015 - MLT1A2 LTR MaLR -32 362 1 660 269 91 26 chr1 143599338 143599647 -99064706 + L2 LINE L2 2468 2796 -518 236 173 0 77 chr1 143599791 143599843 -99064510 + L2 LINE L2 3265 3312 -1 1650 139 4 43 chr1 143599898 143600179 -99064174 + AluJb SINE Alu 26 295 -17 272 267 86 29 chr1 143600454 143600559 -99063794 - MIR SINE MIR -71 191 81 294 95 0 0 chr1 143600568 143600610 -99063743 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 229 213 0 0 chr1 143601531 143601578 -99062775 + L2 LINE L2 3267 3313 0 180 270 54 14 chr1 143602522 143602596 -99061757 + L2 LINE L2 2730 2806 -508 210 232 305 0 chr1 143602909 143603004 -99061349 + L2 LINE L2 3136 3259 -13 207 0 0 0 chr1 143603439 143603462 -99060891 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 654 128 10 0 chr1 143603465 143603567 -99060786 - AluSg/x SINE Alu -32 278 176 1091 98 86 43 chr1 143603671 143603834 -99060519 - AluSp SINE Alu -143 170 1 728 179 78 166 chr1 143604144 143604225 -99060128 + MER2 DNA MER2_type 1 88 -256 189 107 0 0 chr1 143604225 143604253 -99060100 + (TTA)n Simple_repeat Simple_repeat 1 28 0 728 179 78 166 chr1 143604253 143604275 -99060078 + MER2 DNA MER2_type 88 110 -234 1617 157 76 0 chr1 143604275 143604587 -99059766 - AluSx SINE Alu 0 332 1 728 179 78 166 chr1 143604587 143604644 -99059709 + MER2 DNA MER2_type 110 170 -174 2188 131 10 0 chr1 143604644 143604949 -99059404 - AluSx SINE Alu -4 308 1 728 179 78 166 chr1 143604949 143605088 -99059265 + MER2 DNA MER2_type 170 266 -78 2280 54 86 0 chr1 143605088 143605368 -99058985 - AluSc SINE Alu -5 304 1 728 179 78 166 chr1 143605368 143605438 -99058915 + MER2 DNA MER2_type 266 341 -3 524 71 0 0 chr1 143605653 143605723 -99058630 + AluSp SINE Alu 36 105 -208 1777 139 0 0 chr1 143605874 143606126 -99058227 - AluSq SINE Alu -61 252 1 473 231 89 2 chr1 143606859 143607021 -99057332 - MIR3 SINE MIR -26 182 5 236 254 158 0 chr1 143607365 143607452 -99056901 - MIR SINE MIR -44 164 65 1006 162 0 0 chr1 143607474 143607622 -99056731 - AluJb SINE Alu -28 284 137 1752 171 7 13 chr1 143607807 143608105 -99056248 + AluJo SINE Alu 1 296 -16 728 97 35 0 chr1 143608588 143608701 -99055652 - L1MA5A LINE L1 -104 6193 6077 1596 137 89 0 chr1 143608716 143608987 -99055366 + MER1B DNA MER1_type 44 338 -1 1955 58 23 69 chr1 143608990 143609254 -99055099 - L1MA5A LINE L1 -216 6081 5835 2469 80 3 0 chr1 143609254 143609554 -99054799 - AluSp SINE Alu -12 301 1 1955 58 23 69 chr1 143609554 143609637 -99054716 - L1MA5A LINE L1 -462 5835 5750 2244 107 3 7 chr1 143609742 143610041 -99054312 - AluSq SINE Alu -15 298 1 687 176 0 29 chr1 143610195 143610331 -99054022 + FLAM_A SINE Alu 1 132 -1 1776 171 6 19 chr1 143610397 143610712 -99053641 - AluSx SINE Alu -1 311 1 2026 161 0 0 chr1 143611034 143611332 -99053021 - AluSx SINE Alu -14 298 1 748 219 0 0 chr1 143611347 143611493 -99052860 + FRAM SINE Alu 1 138 -38 185 288 14 0 chr1 143611545 143611618 -99052735 + L3b LINE CR1 1342 1415 -168 204 271 215 28 chr1 143612401 143612508 -99051845 + MIR SINE MIR 58 184 -24 234 0 0 0 chr1 143612984 143613010 -99051343 + (T)n Simple_repeat Simple_repeat 1 26 0 469 147 0 0 chr1 143613127 143613202 -99051151 + AluS SINE Alu 227 301 -11 2088 131 24 0 chr1 143613371 143613662 -99050691 - AluSx SINE Alu -14 298 1 307 241 80 62 chr1 143613773 143613885 -99050468 + MIR SINE MIR 128 241 -21 761 251 162 22 chr1 143614405 143614557 -99049796 - L2 LINE L2 0 3313 3184 2389 109 3 0 chr1 143614557 143614869 -99049484 + AluSp SINE Alu 1 313 0 761 251 162 22 chr1 143614869 143615240 -99049113 - L2 LINE L2 -129 3184 2708 525 117 0 0 chr1 143615241 143615318 -99049035 - AluJ/FRAM SINE Alu -10 302 226 336 143 0 0 chr1 143615318 143615367 -99048986 - AluJ/FRAM SINE Alu -26 276 228 1995 144 0 0 chr1 143615367 143615644 -99048709 - AluJo SINE Alu -34 278 2 2004 242 153 2 chr1 143615644 143616272 -99048081 - L2 LINE L2 -596 2718 1996 462 342 11 16 chr1 143616917 143617101 -99047252 + MIR SINE MIR 20 202 -60 499 267 145 0 chr1 143617139 143617311 -99047042 + MIR SINE MIR 2 198 -64 352 240 0 0 chr1 143617318 143617393 -99046960 - MIR SINE MIR 0 262 188 304 212 0 35 chr1 143617366 143617451 -99046902 + MIR SINE MIR 175 256 -6 * 1625 168 42 21 chr1 143618790 143618938 -99045415 - AluJb SINE Alu -21 291 148 2159 125 0 31 chr1 143618938 143619258 -99045095 - AluSx SINE Alu -2 310 1 1625 168 42 21 chr1 143619258 143619394 -99044959 - AluJb SINE Alu -164 148 1 1016 171 24 81 chr1 143620472 143620718 -99043635 + MIR SINE MIR 6 237 -25 535 173 34 123 chr1 143620820 143620999 -99043354 + FAM SINE Alu 1 163 -12 546 63 0 0 chr1 143620999 143621078 -99043275 + (TG)n Simple_repeat Simple_repeat 2 80 0 544 305 126 14 chr1 143621642 143621865 -99042488 + MIR SINE MIR 14 261 -1 2033 153 3 0 chr1 143622638 143622933 -99041420 + AluJo SINE Alu 1 296 -16 517 179 13 90 chr1 143625390 143625456 -99038897 + MIR SINE MIR 48 118 -144 1991 147 0 10 chr1 143625456 143625778 -99038575 - AluJb SINE Alu 0 312 1 517 179 13 90 chr1 143625778 143625866 -99038487 + MIR SINE MIR 118 189 -73 243 114 0 0 chr1 143625869 143625904 -99038449 - HsTC2 DNA Tc2 0 1898 1864 2110 143 0 0 chr1 143625946 143626246 -99038107 + AluSx SINE Alu 1 300 -12 310 370 14 36 chr1 143626259 143626478 -99037875 + L2 LINE L2 2679 2892 -422 509 262 110 26 chr1 143626715 143626906 -99037447 + MIR SINE MIR 53 259 -3 293 333 135 0 chr1 143627903 143628044 -99036309 + MIR SINE MIR 6 165 -97 2026 111 30 24 chr1 143629946 143630076 -99034277 + AluSx SINE Alu 1 129 -183 2534 76 0 0 chr1 143630076 143630377 -99033976 + AluY SINE Alu 1 301 -10 2026 111 30 24 chr1 143630377 143630543 -99033810 + AluSx SINE Alu 129 299 -13 2929 97 29 25 chr1 143631661 143632145 -99032208 - L1MA6 LINE L1 -1 6299 5814 317 175 0 0 chr1 143632162 143632219 -99032134 - Alu SINE Alu 0 302 246 277 345 31 31 chr1 143632524 143632694 -99031659 - MIR SINE MIR -63 145 18 464 244 106 19 chr1 143633464 143633624 -99030729 + MIR3 SINE MIR 9 182 -26 276 149 0 0 chr1 143635249 143635296 -99029057 + (TG)n Simple_repeat Simple_repeat 1 47 0 754 138 0 36 chr1 143635733 143635871 -99028482 - FLAM_C SINE Alu 0 133 1 276 307 85 20 chr1 143635872 143636025 -99028328 - MIR SINE MIR -50 212 50 2432 102 0 0 chr1 143636028 143636331 -99028022 - AluSx SINE Alu -9 303 1 2504 95 0 0 chr1 143636531 143636835 -99027518 + AluSq SINE Alu 1 304 -9 180 152 0 0 chr1 143638354 143638387 -99025966 + (TG)n Simple_repeat Simple_repeat 1 33 0 2121 101 20 7 chr1 143638491 143638797 -99025556 - AluSx SINE Alu -2 310 1 947 109 0 15 chr1 143638798 143638935 -99025418 - AluSq/x SINE Alu -178 135 1 415 224 41 0 chr1 143639008 143639106 -99025247 - U13 snRNA snRNA -2 102 1 255 208 245 0 chr1 143640769 143640875 -99023478 - MIR SINE MIR -55 207 76 2117 97 10 16 chr1 143640928 143641237 -99023116 - AluSg SINE Alu -3 307 1 1992 94 4 0 chr1 143641413 143641688 -99022665 + AluSg SINE Alu 34 309 -1 286 216 128 10 chr1 143641692 143641794 -99022559 + MIR SINE MIR 53 166 -96 225 0 0 0 chr1 143642755 143642780 -99021573 + (T)n Simple_repeat Simple_repeat 1 25 0 454 290 21 21 chr1 143643988 143644133 -99020220 - MIR SINE MIR -72 190 46 230 322 62 48 chr1 143644159 143644305 -99020048 - L3 LINE CR1 -351 1226 1079 834 197 22 0 chr1 143644428 143644606 -99019747 + L1MB7 LINE L1 4865 5046 -1100 803 128 0 16 chr1 143644606 143644731 -99019622 + FLAM_C SINE Alu 1 123 -20 2257 103 3 0 chr1 143644744 143645055 -99019298 + AluSx SINE Alu 1 312 0 4588 154 66 6 chr1 143645055 143645224 -99019129 + L1MB7 LINE L1 5193 5350 -834 1710 170 3 7 chr1 143645224 143645518 -99018835 - AluJb SINE Alu -19 293 1 4588 154 66 6 chr1 143645518 143646282 -99018071 + L1MB7 LINE L1 5350 6179 -5 568 161 11 0 chr1 143646452 143646545 -99017808 + AluJ/FLAM SINE Alu 1 94 -218 2066 97 48 3 chr1 143646547 143646836 -99017517 + AluSx SINE Alu 1 302 -10 2272 79 3 0 chr1 143646836 143647125 -99017228 + AluSp SINE Alu 1 291 -22 29 0 0 0 chr1 143647125 143647154 -99017199 + AT_rich Low_complexity Low_complexity 1 29 0 329 110 10 0 chr1 143647154 143647210 -99017143 + FLAM_A SINE Alu 81 128 -5 240 133 0 0 chr1 143647343 143647388 -99016965 - Alu SINE Alu 0 133 89 824 204 117 4 chr1 143647459 143647699 -99016654 + MER5C DNA MER1_type 52 318 -6 518 227 122 56 chr1 143647829 143648048 -99016305 - L1ME4a LINE L1 -199 5922 5676 1767 157 7 3 chr1 143648048 143648342 -99016011 - AluJb SINE Alu -11 301 7 518 227 122 56 chr1 143648342 143648426 -99015927 - L1ME4a LINE L1 -445 5676 5599 374 226 113 0 chr1 143648436 143648569 -99015784 - L1ME4a LINE L1 -1 6120 5973 320 265 108 20 chr1 143648578 143648680 -99015673 - L1ME4a LINE L1 -199 5922 5812 2150 117 3 0 chr1 143648741 143649050 -99015303 + AluSx SINE Alu 3 312 0 1150 197 17 18 chr1 143649349 143649640 -99014713 + L1MD3 LINE L1 7616 7995 0 812 267 47 55 chr1 143649729 143649898 -99014455 - L2 LINE L2 0 3313 3144 2025 136 0 0 chr1 143649898 143650192 -99014161 + AluSx SINE Alu 1 294 -18 812 267 47 55 chr1 143650192 143650366 -99013987 - L2 LINE L2 -169 3144 2973 426 256 43 0 chr1 143650474 143650591 -99013762 + MLT1J2 LTR MaLR 67 188 -262 791 126 9 0 chr1 143650593 143650704 -99013649 + FLAM_C SINE Alu 3 114 -19 1234 186 83 45 chr1 143650709 143650999 -99013354 - AluJo SINE Alu -9 303 3 32 43 0 0 chr1 143651001 143651047 -99013306 + AT_rich Low_complexity Low_complexity 1 46 0 2284 101 3 0 chr1 143651047 143651353 -99013000 + AluSq SINE Alu 1 307 -6 436 169 24 136 chr1 143651415 143651651 -99012702 + MLT1J1 LTR MaLR 232 409 0 2170 98 3 22 chr1 143651761 143652078 -99012275 - AluSx SINE Alu -1 311 1 855 247 269 14 chr1 143652080 143652563 -99011790 + MLT1G1 LTR MaLR 5 553 -2 503 283 71 78 chr1 143652662 143652945 -99011408 - L3 LINE CR1 -924 653 373 335 264 93 57 chr1 143652987 143653127 -99011226 - HAL1b LINE L1 -6 1342 1198 809 230 72 38 chr1 143653153 143653555 -99010798 + MLT1G LTR MaLR 3 372 -218 2355 69 3 3 chr1 143653763 143654069 -99010284 - AluY SINE Alu -5 306 1 2203 99 0 29 chr1 143654069 143654247 -99010106 - AluSp SINE Alu -7 306 139 2219 93 0 40 chr1 143654247 143654571 -99009782 - AluSx SINE Alu -1 311 1 2203 99 0 29 chr1 143654571 143654706 -99009647 - AluSp SINE Alu -174 139 2 2218 125 0 0 chr1 143654728 143655040 -99009313 - AluSx SINE Alu 0 312 1 290 327 27 0 chr1 143655045 143655155 -99009198 - L1MC4a LINE L1 -1921 5887 5775 1906 123 18 0 chr1 143655397 143655697 -99008656 + AluSg SINE Alu 1 305 0 379 281 54 14 chr1 143656569 143656722 -99007631 - MIR SINE MIR -56 206 38 2249 82 3 0 chr1 143656815 143657136 -99007217 - AluSx SINE Alu 0 312 3 233 229 229 0 chr1 143657193 143657276 -99007077 + MIR SINE MIR 49 150 -112 222 250 156 0 chr1 143657735 143657799 -99006554 + L2 LINE L2 3194 3267 -5 236 306 52 67 chr1 143660893 143660912 -99003441 - L2 LINE L2 0 3313 3295 1017 169 108 125 chr1 143660912 143661069 -99003284 - AluJo SINE Alu -11 291 140 2172 92 0 3 chr1 143661069 143661364 -99002989 - AluSc SINE Alu -15 294 1 1017 169 108 125 chr1 143661364 143661502 -99002851 - AluJo SINE Alu -162 140 1 236 306 52 67 chr1 143661502 143661616 -99002737 - L2 LINE L2 -18 3295 3182 435 346 66 4 chr1 143661637 143661865 -99002488 - MIR SINE MIR -8 254 13 195 305 34 0 chr1 143661981 143662040 -99002313 - L2 LINE L2 -213 3059 2999 1273 179 116 3 chr1 143662062 143662347 -99002006 - MER2 DNA MER2_type -28 317 1 249 225 197 0 chr1 143662354 143662425 -99001928 - L2 LINE L2 -23 3290 3206 2354 70 0 0 chr1 143662592 143662891 -99001462 - AluSg SINE Alu -11 299 1 241 291 136 9 chr1 143663853 143663963 -99000390 - L2 LINE L2 -4 3268 3145 562 347 27 9 chr1 143666012 143666231 -98998122 - MIR SINE MIR -38 224 2 2099 87 3 39 chr1 143666296 143666606 -98997747 + AluSx SINE Alu 3 301 -11 24 0 0 0 chr1 143666826 143666850 -98997503 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 143667347 143667370 -98996983 + GC_rich Low_complexity Low_complexity 1 23 0 212 163 0 23 chr1 143667426 143667469 -98996884 + CT-rich Low_complexity Low_complexity 1 42 0 217 286 0 0 chr1 143669815 143669864 -98994489 + (TG)n Simple_repeat Simple_repeat 2 50 0 216 158 0 0 chr1 143669889 143669927 -98994426 + GA-rich Low_complexity Low_complexity 1 38 0 215 293 17 0 chr1 143669947 143670005 -98994348 - MIR SINE MIR -86 122 64 234 0 0 0 chr1 143670381 143670407 -98993946 + (T)n Simple_repeat Simple_repeat 1 26 0 183 224 52 35 chr1 143671383 143671441 -98992912 + L3b LINE CR1 1340 1398 -185 190 279 13 51 chr1 143671974 143672053 -98992300 + MIR3 SINE MIR 3 78 -130 194 214 48 0 chr1 143672309 143672351 -98992002 + MIR3 SINE MIR 150 193 -15 807 170 52 0 chr1 143672830 143672983 -98991370 - AluJb SINE Alu -15 297 137 285 245 40 46 chr1 143673659 143673789 -98990564 + MIR SINE MIR 41 171 -58 181 321 12 37 chr1 143676761 143676842 -98987511 + MIR SINE MIR 26 104 -158 366 280 67 20 chr1 143677186 143677336 -98987017 - MIR3 SINE MIR -19 189 33 251 209 39 77 chr1 143678943 143679125 -98985228 + (TCTCTG)n Simple_repeat Simple_repeat 3 177 0 206 311 58 19 chr1 143681560 143681663 -98982690 + L3b LINE CR1 1299 1405 -178 314 264 47 39 chr1 143681709 143681838 -98982515 - L2 LINE L2 -63 3250 3121 1917 104 0 11 chr1 143682403 143682672 -98981681 + AluSg SINE Alu 43 308 -2 1137 179 78 78 chr1 143682679 143682986 -98981367 + AluJb SINE Alu 6 312 0 1140 169 55 32 chr1 143684013 143684232 -98980121 + MER58A DNA MER1_type 1 224 0 824 57 0 0 chr1 143684303 143684409 -98979944 + HY1 scRNA scRNA 6 111 -1 209 308 34 8 chr1 143686382 143686499 -98977854 + (TCTCTG)n Simple_repeat Simple_repeat 4 123 0 312 358 47 13 chr1 143686531 143686702 -98977651 + MIR SINE MIR 18 190 -62 2391 94 3 0 chr1 143689679 143689978 -98974375 + AluSp SINE Alu 1 300 -13 456 305 13 33 chr1 143690418 143690569 -98973784 + MIR SINE MIR 56 203 -59 303 134 17 250 chr1 143693546 143693666 -98970687 - MER53 DNA DNA 0 189 43 1779 141 11 18 chr1 143693666 143693949 -98970404 - AluJo SINE Alu 0 312 32 303 134 17 250 chr1 143693949 143694039 -98970314 - MER53 DNA DNA -146 43 35 1805 152 55 3 chr1 143694039 143694328 -98970025 - AluSx SINE Alu -8 304 1 303 134 17 250 chr1 143694328 143694348 -98970005 - MER53 DNA DNA -154 35 12 1341 109 0 31 chr1 143695177 143695194 -98969159 + AluSg/x SINE Alu 118 134 -176 2270 105 3 13 chr1 143695194 143695499 -98968854 + AluSc SINE Alu 1 302 -7 2297 95 7 3 chr1 143695499 143695793 -98968560 + AluY SINE Alu 1 295 -16 1341 109 0 31 chr1 143695793 143695967 -98968386 + AluSg/x SINE Alu 132 304 -6 229 240 67 0 chr1 143696192 143696267 -98968086 + MIR3 SINE MIR 112 191 -17 282 296 59 0 chr1 143696934 143697073 -98967280 + MIR SINE MIR 12 141 -67 1942 100 0 0 chr1 143697080 143697321 -98967032 + AluSg SINE Alu 1 241 -69 1010 119 0 0 chr1 143697321 143697455 -98966898 + AluSg/x SINE Alu 167 300 -10 266 286 29 29 chr1 143697585 143697678 -98966675 + MIR SINE MIR 47 142 -120 609 248 164 9 chr1 143697678 143697904 -98966449 - MIR SINE MIR 0 262 2 266 286 29 29 chr1 143697904 143697915 -98966438 + MIR SINE MIR 141 151 -111 1780 102 8 4 chr1 143698060 143698296 -98966057 - AluSg/x SINE Alu 0 312 76 1709 169 49 0 chr1 143698617 143698901 -98965452 - AluJo SINE Alu -14 298 1 2309 128 0 0 chr1 143698951 143699256 -98965097 + AluSx SINE Alu 1 305 -7 246 234 0 0 chr1 143699573 143699680 -98964673 + (CAG)n Simple_repeat Simple_repeat 3 109 0 215 31 31 0 chr1 143701004 143701036 -98963317 + (TTA)n Simple_repeat Simple_repeat 3 35 0 392 312 0 0 chr1 143702777 143702934 -98961419 + (TG)n Simple_repeat Simple_repeat 1 157 0 421 136 62 12 chr1 143703456 143703537 -98960816 + L2 LINE L2 3229 3313 0 2413 108 3 0 chr1 143705363 143705669 -98958684 + AluSx SINE Alu 1 307 -5 2519 56 3 13 chr1 143705669 143705971 -98958382 + AluSp SINE Alu 1 299 -14 1122 201 19 87 chr1 143706426 143706735 -98957618 + MLT1F LTR MaLR 5 292 -250 436 330 57 10 chr1 143706944 143707138 -98957215 + MLT1I LTR MaLR 4 206 -203 333 250 96 10 chr1 143707414 143707518 -98956835 + MIR SINE MIR 39 151 -111 307 316 102 90 chr1 143707804 143708139 -98956214 - L2 LINE L2 -8 3264 2926 356 339 37 82 chr1 143708182 143708427 -98955926 - L2 LINE L2 -459 2855 2622 2319 97 0 0 chr1 143708760 143709058 -98955295 - AluY SINE Alu -13 298 1 2233 108 3 13 chr1 143709170 143709305 -98955048 + AluSx SINE Alu 1 136 -176 2316 90 10 3 chr1 143709305 143709605 -98954748 + AluSg SINE Alu 1 302 -8 2233 108 3 13 chr1 143709605 143709775 -98954578 + AluSx SINE Alu 136 303 -9 2532 63 13 0 chr1 143710342 143710643 -98953710 - AluSg SINE Alu -4 306 2 184 200 0 25 chr1 143711379 143711419 -98952934 + MIR SINE MIR 218 256 -6 216 0 0 0 chr1 143712193 143712217 -98952136 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 239 300 45 18 chr1 143712227 143712337 -98952016 - MIR SINE MIR -72 136 24 2587 58 0 7 chr1 143712337 143712646 -98951707 - AluSx SINE Alu -5 307 1 207 100 0 0 chr1 143712752 143712782 -98951571 + (T)n Simple_repeat Simple_repeat 1 30 0 2266 105 3 6 chr1 143713133 143713446 -98950907 + AluJb SINE Alu 1 312 0 504 251 99 37 chr1 143713683 143713874 -98950479 + L3 LINE CR1 1375 1577 0 1914 155 11 3 chr1 143713971 143714255 -98950098 - AluJo SINE Alu -18 294 9 427 281 16 16 chr1 143714474 143714595 -98949758 + MIR SINE MIR 20 140 -68 2273 97 7 3 chr1 143714705 143715013 -98949340 + AluSg SINE Alu 1 309 -1 369 275 108 0 chr1 143715094 143715214 -98949139 + L2 LINE L2 3132 3264 -8 194 171 0 24 chr1 143715245 143715286 -98949067 + MIR SINE MIR 100 139 -123 499 223 116 113 chr1 143715595 143715765 -98948588 - MER102a DNA MER1_type -1088 329 156 2006 128 23 3 chr1 143715765 143716070 -98948283 - AluSx SINE Alu -1 311 1 499 223 116 113 chr1 143716070 143716226 -98948127 - MER102a DNA MER1_type -1261 156 2 255 333 69 39 chr1 143716336 143716699 -98947654 + L2 LINE L2 1564 1937 -1377 183 222 0 0 chr1 143716752 143716788 -98947565 + L2 LINE L2 3228 3263 -9 191 337 134 33 chr1 143716815 143717396 -98946957 - L2 LINE L2 -1293 2021 1382 478 350 107 13 chr1 143717530 143717847 -98946506 + L2 LINE L2 2136 2482 -832 312 283 88 58 chr1 143717856 143718117 -98946236 - L1ME4a LINE L1 -157 5964 5685 1773 187 7 0 chr1 143718117 143718406 -98945947 + AluJb SINE Alu 3 293 -19 312 283 88 58 chr1 143718406 143718544 -98945809 - L1ME4a LINE L1 -436 5685 5553 2370 89 3 10 chr1 143719119 143719421 -98944932 - AluSx SINE Alu -12 300 1 232 278 89 141 chr1 143719717 143720030 -98944323 + L2 LINE L2 2153 2449 -865 * 301 269 123 39 chr1 143720028 143720158 -98944195 - MIR SINE MIR 0 262 122 746 148 7 22 chr1 143720370 143720531 -98943822 - FLAM_C SINE Alu 0 159 1 2321 104 3 0 chr1 143720956 143721255 -98943098 + AluSp SINE Alu 2 301 -12 944 153 7 7 chr1 143721268 143721418 -98942935 - FRAM SINE Alu -26 150 1 319 253 47 9 chr1 143721940 143722103 -98942250 + MIR SINE MIR 28 247 -15 2448 85 0 16 chr1 143722527 143722844 -98941509 + AluSx SINE Alu 1 312 0 1166 156 0 6 chr1 143722955 143723134 -98941219 - AluJb SINE Alu 0 312 135 264 280 28 65 chr1 143723134 143723241 -98941112 + MIR SINE MIR 104 206 -56 194 286 62 89 chr1 143723767 143723879 -98940474 + L2 LINE L2 1322 1430 -1884 2310 106 6 3 chr1 143724079 143724431 -98939922 - AluSx SINE Alu 0 353 1 2586 77 0 0 chr1 143725199 143725510 -98938843 + AluSx SINE Alu 1 311 -1 372 313 27 9 chr1 143725594 143725706 -98938647 - L2 LINE L2 0 3313 3200 919 211 0 0 chr1 143725808 143725974 -98938379 - AluJb SINE Alu -2 310 145 315 359 144 4 chr1 143725974 143726244 -98938109 - L3 LINE CR1 -37 1540 1233 484 298 62 6 chr1 143726297 143726475 -98937878 - MIR SINE MIR -12 250 63 456 347 57 5 chr1 143726528 143726721 -98937632 - L3 LINE CR1 -505 1072 870 205 280 20 0 chr1 143726942 143726992 -98937361 + L2 LINE L2 3222 3272 0 * 233 239 30 0 chr1 143726990 143727057 -98937296 - L3 LINE CR1 -709 868 800 403 277 19 44 chr1 143727149 143727330 -98937023 - MIR3 SINE MIR -63 145 4 280 286 217 26 chr1 143727570 143727759 -98936594 + L2 LINE L2 2941 3165 -148 267 293 163 12 chr1 143729332 143729498 -98934855 - MIR3 SINE MIR -71 191 2 360 0 0 0 chr1 143730363 143730403 -98933950 + (CA)n Simple_repeat Simple_repeat 2 41 0 204 308 94 34 chr1 143730433 143730550 -98933803 - MIR SINE MIR -62 200 77 199 267 93 23 chr1 143730938 143731024 -98933329 - MIR3 SINE MIR -49 159 68 303 28 0 0 chr1 143731379 143731415 -98932938 + (CA)n Simple_repeat Simple_repeat 1 36 0 1456 73 0 107 chr1 143735613 143735846 -98928507 - AluSg SINE Alu -102 208 1 215 315 206 11 chr1 143738156 143738340 -98926013 - L2 LINE L2 -7 3265 3046 * 228 281 16 0 chr1 143738334 143738398 -98925955 - MIR3 SINE MIR -28 180 116 186 43 0 0 chr1 143739765 143739788 -98924565 + (TGG)n Simple_repeat Simple_repeat 1 23 0 426 20 0 0 chr1 143740874 143740925 -98923428 + (TG)n Simple_repeat Simple_repeat 2 52 0 576 152 0 0 chr1 143742937 143743036 -98921317 + (TG)n Simple_repeat Simple_repeat 1 99 0 205 357 36 12 chr1 143743945 143744029 -98920324 + MER5A DNA MER1_type 103 188 -1 21 71 0 0 chr1 143747696 143747738 -98916615 + GC_rich Low_complexity Low_complexity 1 42 0 201 219 27 27 chr1 143749117 143749190 -98915163 + (CGG)n Simple_repeat Simple_repeat 3 75 0 268 303 143 0 chr1 143750781 143750900 -98913453 - MIR SINE MIR -46 216 81 2128 94 0 26 chr1 143750918 143751226 -98913127 - AluSc SINE Alu -9 300 1 252 296 102 0 chr1 143752722 143752810 -98911543 + MIR SINE MIR 110 206 -56 623 228 139 13 chr1 143754386 143754544 -98909809 + MER5B DNA MER1_type 1 178 0 354 267 158 14 chr1 143755430 143755576 -98908777 - MIR3 SINE MIR -23 185 19 2313 85 13 0 chr1 143757910 143758261 -98906092 - AluY SINE Alu 0 355 1 331 256 0 47 chr1 143758353 143758439 -98905914 - LTR67 LTR ERVL -379 178 97 365 337 84 55 chr1 143758707 143759122 -98905231 - L2 LINE L2 -3 3269 2843 2268 119 0 0 chr1 143759615 143759927 -98904426 + AluSx SINE Alu 1 312 0 2308 85 0 0 chr1 143761001 143761296 -98903057 - AluSx SINE Alu -11 301 7 368 253 62 86 chr1 143761456 143761617 -98902736 + MIR SINE MIR 28 171 -37 197 312 188 43 chr1 143762763 143762901 -98901452 - L3b LINE CR1 -130 1453 1296 474 316 39 7 chr1 143764347 143764502 -98899851 - MIR SINE MIR -49 213 54 2180 110 3 0 chr1 143765042 143765334 -98899019 + AluSx SINE Alu 1 293 -19 2321 72 0 3 chr1 143766252 143766544 -98897809 + AluSc SINE Alu 1 291 -18 330 222 60 26 chr1 143767207 143767324 -98897029 - MIR3 SINE MIR -49 159 39 222 349 211 7 chr1 143768402 143768554 -98895799 - MIR SINE MIR -17 245 63 267 240 58 29 chr1 143768854 143768958 -98895395 - MIR SINE MIR -72 136 30 480 309 45 28 chr1 143769645 143769823 -98894530 - MIR SINE MIR -74 188 8 671 240 91 27 chr1 143770001 143770222 -98894131 - MIR SINE MIR -8 254 20 810 175 79 17 chr1 143770254 143770431 -98893922 - MER20 DNA MER1_type -4 215 28 1359 195 44 17 chr1 143770998 143771295 -98893058 + AluJo SINE Alu 1 305 -7 2328 103 3 0 chr1 143771853 143772165 -98892188 + AluSp SINE Alu 1 313 0 2365 94 0 0 chr1 143773239 143773538 -98890815 + AluSx SINE Alu 1 299 -13 542 111 0 0 chr1 143773552 143773624 -98890729 + AluJ/FLAM SINE Alu 3 74 -238 2350 143 48 60 chr1 143775021 143775293 -98889060 - LTR10A LTR ERV1 -4 629 355 2818 19 0 0 chr1 143775293 143775611 -98888742 + AluYb8 SINE Alu 1 318 0 2350 143 48 60 chr1 143775611 143775854 -98888499 - LTR10A LTR ERV1 -278 355 111 2157 98 3 0 chr1 143775854 143776149 -98888204 + AluSp SINE Alu 1 296 -17 2307 73 0 10 chr1 143776149 143776477 -98887876 + AluY SINE Alu 1 311 0 2350 143 48 60 chr1 143776477 143776544 -98887809 - LTR10A LTR ERV1 -520 113 1 228 157 20 20 chr1 143776566 143776617 -98887736 - LTR10B LTR ERV1 -496 51 1 260 282 77 0 chr1 143776626 143776704 -98887649 - MIR SINE MIR -17 245 162 2399 85 0 0 chr1 143776713 143777020 -98887333 + AluSq SINE Alu 1 307 -6 1610 142 13 62 chr1 143777273 143777421 -98886932 + AluJb SINE Alu 3 130 -182 2348 71 0 3 chr1 143777421 143777715 -98886638 + AluY SINE Alu 1 293 -18 1610 142 13 62 chr1 143777715 143777875 -98886478 + AluJb SINE Alu 130 296 -16 224 282 24 47 chr1 143777925 143778010 -98886343 + L2 LINE L2 2920 3002 -270 2284 64 0 73 chr1 143778323 143778652 -98885701 - AluY SINE Alu -6 305 1 21 57 0 0 chr1 143778684 143778719 -98885634 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr1 143778905 143778940 -98885413 + AT_rich Low_complexity Low_complexity 1 35 0 2216 106 10 0 chr1 143778991 143779294 -98885059 + AluSq SINE Alu 1 306 -7 191 374 0 0 chr1 143779640 143779723 -98884630 + MIR SINE MIR 60 142 -66 479 263 102 0 chr1 143779782 143779919 -98884434 + MIR SINE MIR 112 262 0 321 330 9 69 chr1 143780292 143780525 -98883828 - L2 LINE L2 -39 3274 3056 1327 126 14 28 chr1 143780528 143780743 -98883610 + AluSq SINE Alu 85 296 -17 493 203 72 39 chr1 143780786 143780939 -98883414 - L1MC5 LINE L1 -51 7910 7753 305 338 44 7 chr1 143780950 143781086 -98883267 - L2 LINE L2 -277 3036 2896 345 247 138 13 chr1 143781114 143781272 -98883081 + MIR SINE MIR 53 228 -34 186 322 46 11 chr1 143782639 143782726 -98881627 - L2 LINE L2 -88 3184 3095 1689 154 49 0 chr1 143786911 143787197 -98877156 - AluJo SINE Alu -12 300 1 269 322 59 59 chr1 143788385 143788624 -98875729 + L3 LINE CR1 1334 1572 -5 620 301 40 0 chr1 143789514 143789687 -98874666 - MIR SINE MIR -9 253 74 2421 75 0 0 chr1 143789775 143790080 -98874273 + AluSq SINE Alu 1 305 -8 1258 73 0 39 chr1 143790082 143790260 -98874093 + AluY SINE Alu 1 171 -140 1716 69 5 0 chr1 143790333 143790551 -98873802 + AluSq SINE Alu 1 219 -94 229 159 23 0 chr1 143790937 143790981 -98873372 + L2 LINE L2 3269 3313 0 230 367 18 0 chr1 143791290 143791399 -98872954 + L2 LINE L2 2906 3016 -256 477 283 43 53 chr1 143792618 143792708 -98871645 + MIR SINE MIR 75 164 -98 1996 133 0 7 chr1 143792708 143793009 -98871344 + AluJb SINE Alu 1 299 -13 477 283 43 53 chr1 143793009 143793105 -98871248 + MIR SINE MIR 164 259 -3 494 127 0 0 chr1 143793159 143793230 -98871123 - Alu SINE Alu -8 304 234 1908 154 3 3 chr1 143793503 143793814 -98870539 - AluSx SINE Alu -1 311 1 210 299 131 9 chr1 143794061 143794168 -98870185 + L2 LINE L2 2625 2744 -570 551 154 192 0 chr1 143795464 143795594 -98868759 - MIR SINE MIR -54 208 54 733 276 55 0 chr1 143795977 143796194 -98868159 + MIR SINE MIR 3 231 -31 879 323 83 68 chr1 143796199 143796904 -98867449 - L1M2 LINE L1 -2699 4149 1649 23 88 0 0 chr1 143796904 143796938 -98867415 + AT_rich Low_complexity Low_complexity 1 34 0 450 301 73 94 chr1 143797178 143797757 -98866596 + L1MCa LINE L1 2047 3765 -2661 1266 109 0 31 chr1 143797806 143797823 -98866530 + AluSg/x SINE Alu 120 136 -176 2132 105 3 13 chr1 143797823 143798128 -98866225 + AluSc SINE Alu 1 302 -7 2160 95 7 3 chr1 143798128 143798422 -98865931 + AluY SINE Alu 1 295 -16 1266 109 0 31 chr1 143798422 143798596 -98865757 + AluSg/x SINE Alu 134 306 -6 237 240 67 0 chr1 143798821 143798896 -98865457 + MIR3 SINE MIR 112 191 -17 293 296 59 0 chr1 143799563 143799702 -98864651 + MIR SINE MIR 12 141 -67 2368 87 0 0 chr1 143799709 143800018 -98864335 + AluSg SINE Alu 1 309 -1 372 321 18 0 chr1 143800102 143800214 -98864139 - L2 LINE L2 0 3313 3200 860 211 0 0 chr1 143800316 143800482 -98863871 - AluJb SINE Alu -2 310 145 307 363 144 4 chr1 143800482 143800752 -98863601 - L3 LINE CR1 -37 1540 1233 485 297 49 16 chr1 143800798 143800983 -98863370 - MIR SINE MIR -9 253 63 418 356 57 6 chr1 143801036 143801213 -98863140 - L3 LINE CR1 -505 1072 887 1999 131 10 10 chr1 143801982 143802294 -98862059 + AluSx SINE Alu 1 312 0 188 256 13 77 chr1 143802388 143802466 -98861887 - L2 LINE L2 0 3313 3241 418 286 9 0 chr1 143803691 143803803 -98860550 - MIR SINE MIR -66 142 30 194 174 22 0 chr1 143803840 143803886 -98860467 + GA-rich Low_complexity Low_complexity 1 47 0 298 221 39 0 chr1 143804766 143804843 -98859510 + MIR SINE MIR 70 149 -113 1876 138 0 0 chr1 143805029 143805311 -98859042 + AluSx SINE Alu 14 295 -17 331 316 156 27 chr1 143805318 143805530 -98858823 + L1MC4a LINE L1 6293 6547 -1261 2099 124 7 0 chr1 143805530 143805837 -98858516 - AluSx SINE Alu -2 310 2 331 316 156 27 chr1 143805837 143805887 -98858466 + L1MC4a LINE L1 6547 6589 -1219 670 206 172 17 chr1 143805887 143806053 -98858300 + L1MC5 LINE L1 6637 6834 -1127 1709 180 33 0 chr1 143806053 143806173 -98858180 + AluJb SINE Alu 1 116 -196 216 0 0 0 chr1 143806173 143806197 -98858156 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1709 180 33 0 chr1 143806197 143806376 -98857977 + AluJb SINE Alu 116 310 -2 670 206 172 17 chr1 143806376 143806389 -98857964 + L1MC5 LINE L1 6834 6844 -1117 2194 108 0 3 chr1 143806471 143806778 -98857575 - AluSx SINE Alu -6 306 1 786 172 15 0 chr1 143806778 143806912 -98857441 - AluSp SINE Alu -176 137 2 1327 120 0 0 chr1 143806934 143807126 -98857227 - AluSg/x SINE Alu 0 312 121 397 302 148 16 chr1 143807592 143807774 -98856579 + MIR SINE MIR 51 256 -6 243 0 0 0 chr1 143808435 143808462 -98855891 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 297 0 0 0 chr1 143808461 143808494 -98855859 + (GA)n Simple_repeat Simple_repeat 2 34 0 456 297 141 36 chr1 143810206 143810479 -98853874 + HAL1 LINE L1 1038 3279 -1205 295 269 51 86 chr1 143810757 143810955 -98853398 - MIR SINE MIR -17 245 45 212 0 0 35 chr1 143812290 143812319 -98852034 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 185 195 0 156 chr1 143812442 143812519 -98851834 - L3b LINE CR1 -199 1384 1320 668 287 51 62 chr1 143813263 143813842 -98850511 + L2 LINE L2 2703 3270 -2 222 325 61 9 chr1 143814996 143815110 -98849243 - MIR3 SINE MIR -27 181 62 21 36 0 0 chr1 143815481 143815509 -98848844 + GC_rich Low_complexity Low_complexity 1 28 0 1067 117 18 0 chr1 143816756 143816919 -98847434 - L1PA15 LINE L1 -52 6113 5948 283 253 123 0 chr1 143817135 143817297 -98847056 - L1ME4a LINE L1 -1 6120 5939 1682 149 0 8 chr1 143817844 143818131 -98846222 + AluSg SINE Alu 51 335 0 182 256 244 12 chr1 143819321 143819403 -98844950 - MIR SINE MIR -74 188 88 1669 178 3 7 chr1 143820311 143820604 -98843749 - AluJb SINE Alu -16 296 5 309 109 0 0 chr1 143821030 143821076 -98843277 + (TAG)n Simple_repeat Simple_repeat 3 48 0 1876 143 28 0 chr1 143821573 143821860 -98842493 + AluSx SINE Alu 1 295 -17 568 269 182 25 chr1 143821928 143822214 -98842139 + L2 LINE L2 2981 3311 -2 249 230 0 0 chr1 143823213 143823287 -98841066 + GA-rich Low_complexity Low_complexity 1 74 0 219 321 0 0 chr1 143824462 143824543 -98839810 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 182 250 0 79 chr1 143826786 143826862 -98837491 - MIR SINE MIR -81 127 58 212 293 192 42 chr1 143827394 143827561 -98836792 + MIR SINE MIR 59 250 -12 208 342 18 9 chr1 143828058 143828172 -98836181 + (CTCA)n Simple_repeat Simple_repeat 2 116 0 235 284 6 71 chr1 143828726 143828909 -98835444 + C-rich Low_complexity Low_complexity 1 171 0 264 350 146 0 chr1 143829698 143829835 -98834518 + MIR3 SINE MIR 41 197 -11 306 194 0 0 chr1 143831301 143831368 -98832985 + (TG)n Simple_repeat Simple_repeat 1 67 0 324 0 0 0 chr1 143832475 143832511 -98831842 + (TG)n Simple_repeat Simple_repeat 2 37 0 246 115 49 16 chr1 143833354 143833415 -98830938 + GA-rich Low_complexity Low_complexity 2 64 0 1794 152 3 13 chr1 143833606 143833909 -98830444 - AluJb SINE Alu -12 300 1 1773 160 3 22 chr1 143834681 143834999 -98829354 + AluJo SINE Alu 1 312 0 203 200 22 0 chr1 143835968 143836013 -98828340 + (CAG)n Simple_repeat Simple_repeat 3 48 0 298 253 84 12 chr1 143836297 143836380 -98827973 - L2 LINE L2 0 3272 3184 273 284 243 4 chr1 143836418 143836661 -98827692 + L2 LINE L2 2020 2320 -994 2202 103 16 13 chr1 143836940 143837251 -98827102 + AluSx SINE Alu 1 312 0 1154 126 11 6 chr1 143837251 143837425 -98826928 + AluSg/x SINE Alu 134 308 -4 194 240 107 13 chr1 143837610 143837685 -98826668 - L3b LINE CR1 -198 1385 1304 189 0 0 0 chr1 143838024 143838045 -98826308 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 189 74 0 0 chr1 143838396 143838423 -98825930 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 219 224 0 0 chr1 143838504 143838553 -98825800 - MIR SINE MIR -1 261 213 2136 120 3 19 chr1 143838793 143839101 -98825252 - AluSq SINE Alu -7 306 4 856 206 0 39 chr1 143839154 143839334 -98825019 - FRAM SINE Alu -4 172 1 570 219 27 59 chr1 143839726 143839849 -98824504 - LTR37B LTR ERV1 -54 414 300 2358 91 0 7 chr1 143839849 143840147 -98824206 + AluSg SINE Alu 1 296 -14 570 219 27 59 chr1 143840147 143840242 -98824111 - LTR37B LTR ERV1 -168 300 203 2088 154 3 3 chr1 143840414 143840726 -98823627 + AluSx SINE Alu 1 312 0 2365 94 0 0 chr1 143893498 143893797 -98770556 + AluSx SINE Alu 1 299 -13 1821 147 13 20 chr1 143893809 143894109 -98770244 + AluJo SINE Alu 1 298 -14 621 186 266 5 chr1 143894335 143894523 -98769830 + MIR SINE MIR 2 238 -24 303 316 71 36 chr1 143894725 143894921 -98769432 - L1M4 LINE L1 -2972 3174 2972 970 107 15 0 chr1 143896071 143896202 -98768151 + FLAM_A SINE Alu 1 133 0 2161 58 41 17 chr1 143897060 143897351 -98767002 + AluY SINE Alu 1 298 -13 2131 104 0 58 chr1 143898032 143898358 -98765995 + AluSx SINE Alu 1 307 -5 2387 82 3 0 chr1 143898893 143899199 -98765154 - AluSp SINE Alu -6 307 1 434 235 8 38 chr1 143899370 143899502 -98764851 - MLT1H1 LTR MaLR -69 486 359 516 231 217 47 chr1 143899556 143899768 -98764585 - MLT1H1 LTR MaLR -342 248 1 1944 94 0 64 chr1 143899866 143900034 -98764319 - AluSg SINE Alu 0 299 158 2386 74 0 0 chr1 143900034 143900331 -98764022 - AluY SINE Alu -14 297 1 1944 94 0 64 chr1 143900331 143900480 -98763873 - AluSg SINE Alu -141 158 1 755 185 54 0 chr1 143900517 143900647 -98763706 + FLAM_C SINE Alu 1 137 -6 2181 107 3 0 chr1 143900655 143900953 -98763400 + AluSx SINE Alu 1 299 -13 382 219 60 144 chr1 143900971 143901186 -98763167 + MIR SINE MIR 65 261 -1 848 68 30 38 chr1 143902993 143903126 -98761227 + FLAM_C SINE Alu 10 141 -2 989 165 6 6 chr1 143904685 143904849 -98759504 - AluSg/x SINE Alu -13 299 136 333 0 0 0 chr1 143904851 143904888 -98759465 + (TG)n Simple_repeat Simple_repeat 2 38 0 2206 110 0 0 chr1 143904889 143905181 -98759172 - AluSx SINE Alu -20 292 1 722 338 17 53 chr1 143905181 143905542 -98758811 + L2 LINE L2 2925 3272 0 2560 65 0 0 chr1 143905629 143905937 -98758416 - AluSg SINE Alu -2 308 1 202 238 0 0 chr1 143906016 143906058 -98758295 + L2 LINE L2 3268 3309 -4 181 287 81 46 chr1 143906747 143906834 -98757519 + L2 LINE L2 3223 3312 -1 2192 72 69 0 chr1 143907419 143907710 -98756643 - AluY SINE Alu 0 311 1 650 98 0 0 chr1 143907753 143907835 -98756518 - AluS SINE Alu -219 94 13 1197 140 14 54 chr1 143907848 143908011 -98756342 - AluJb SINE Alu -13 299 146 2356 91 0 7 chr1 143908011 143908319 -98756034 - AluSq SINE Alu -7 306 1 1197 140 14 54 chr1 143908319 143908377 -98755976 - AluJb SINE Alu -166 146 87 234 276 0 0 chr1 143909823 143909881 -98754472 - MIR3 SINE MIR -2 206 149 1841 150 3 10 chr1 143910093 143910387 -98753966 + AluJo SINE Alu 1 292 -20 261 245 29 59 chr1 143910396 143910498 -98753855 - MIR3 SINE MIR -95 113 15 2270 92 3 0 chr1 143911115 143911409 -98752944 - AluSc SINE Alu -14 295 1 579 291 52 19 chr1 143911447 143911660 -98752693 + MIR SINE MIR 33 252 -10 447 205 68 43 chr1 143911829 143911946 -98752407 - L2 LINE L2 -4 3309 3190 535 289 70 21 chr1 143912578 143912698 -98751655 - MIR SINE MIR -11 251 117 2282 112 0 0 chr1 143912698 143913010 -98751343 + AluSx SINE Alu 1 312 0 535 289 70 21 chr1 143913010 143913076 -98751277 - MIR SINE MIR -145 117 56 607 150 20 0 chr1 143913520 143913620 -98750733 + AluJb SINE Alu 211 312 0 242 220 17 0 chr1 143913677 143913736 -98750617 - MER20 DNA MER1_type -4 215 156 971 204 25 0 chr1 143913763 143914003 -98750350 - L1MD3 LINE L1 -175 7820 7575 1794 152 0 57 chr1 143914005 143914321 -98750032 - AluJo SINE Alu -14 298 1 29 0 0 0 chr1 143914326 143914355 -98749998 + AT_rich Low_complexity Low_complexity 1 29 0 2225 113 6 0 chr1 143914355 143914666 -98749687 - AluSq SINE Alu 0 313 1 851 84 134 0 chr1 143914666 143914785 -98749568 - AluSg SINE Alu -175 135 1 1985 124 0 3 chr1 143914795 143915117 -98749236 - AluSx SINE Alu 0 321 1 2000 145 0 3 chr1 143915180 143915491 -98748862 + AluJb SINE Alu 1 310 -2 803 311 188 29 chr1 143915545 143916130 -98748223 - L2 LINE L2 -513 2801 2124 319 315 51 34 chr1 143917030 143917252 -98747101 + MIR SINE MIR 3 231 -31 2324 60 17 10 chr1 143921019 143921317 -98743036 + AluY SINE Alu 1 300 -11 201 74 0 0 chr1 143921375 143921402 -98742951 + (G)n Simple_repeat Simple_repeat 1 27 0 191 341 77 0 chr1 143925388 143925479 -98738874 - MIR SINE MIR -70 192 95 1292 91 0 0 chr1 143929162 143929327 -98735026 - AluSg/x SINE Alu -18 294 130 2344 72 3 0 chr1 143929330 143929621 -98734732 - AluSq SINE Alu -21 292 1 230 259 190 17 chr1 143930818 143930934 -98733419 - MIR3 SINE MIR -3 205 70 400 323 79 28 chr1 143931429 143931683 -98732670 + MARNA DNA Mariner 197 463 -123 1046 121 25 15 chr1 143931683 143931881 -98732472 + L1 LINE L1 4688 4887 -1259 1773 112 11 43 chr1 143931881 143932157 -98732196 + AluSx SINE Alu 25 291 -21 2133 138 0 0 chr1 143932178 143932490 -98731863 + AluSx SINE Alu 1 312 0 817 148 87 20 chr1 143932509 143932705 -98731648 + L1MA4A LINE L1 5936 6144 -159 695 206 0 8 chr1 143932709 143932835 -98731518 + FLAM_A SINE Alu 6 130 -12 1121 110 6 17 chr1 143932836 143933009 -98731344 + L1MA4A LINE L1 6128 6298 -5 269 349 53 15 chr1 143933083 143933215 -98731138 + MIR3 SINE MIR 12 148 -60 2489 66 0 0 chr1 143934184 143934489 -98729864 + AluY SINE Alu 1 305 -6 2240 83 3 13 chr1 143934501 143934802 -98729551 + AluSq SINE Alu 1 298 -15 478 254 23 54 chr1 143935033 143935116 -98729237 + L2 LINE L2 3188 3267 -46 2246 114 0 0 chr1 143935116 143935422 -98728931 + AluSx SINE Alu 1 306 -6 478 254 23 54 chr1 143935422 143935468 -98728885 + L2 LINE L2 3267 3313 0 776 144 0 61 chr1 143935839 143935971 -98728382 - FLAM_A SINE Alu -9 124 1 865 153 0 0 chr1 143936011 143936142 -98728211 + AluJ SINE Alu 3 133 -169 318 276 190 9 chr1 143936349 143936465 -98727888 + L1ME4a LINE L1 5982 6118 -3 2027 134 3 16 chr1 143936467 143936773 -98727580 + AluSx SINE Alu 1 302 -10 29 0 0 0 chr1 143936805 143936834 -98727519 + AT_rich Low_complexity Low_complexity 1 29 0 1149 168 0 0 chr1 143936838 143937017 -98727336 + AluJ SINE Alu 134 312 0 832 184 7 0 chr1 143937088 143937224 -98727129 + FRAM SINE Alu 23 159 -17 192 313 104 0 chr1 143937363 143937459 -98726894 - L2 LINE L2 -30 3242 3137 373 164 0 27 chr1 143937875 143937948 -98726405 - MER5A DNA MER1_type -118 71 1 334 222 14 0 chr1 143938128 143938200 -98726153 + MLT1L LTR MaLR 490 562 -53 2271 93 10 0 chr1 143938203 143938492 -98725861 - AluSx SINE Alu -8 304 13 1679 151 0 94 chr1 143938505 143938678 -98725675 - AluJo SINE Alu -12 300 171 2593 58 0 7 chr1 143938678 143938988 -98725365 - AluY SINE Alu 0 311 4 1679 151 0 94 chr1 143938988 143939145 -98725208 - AluJo SINE Alu -141 171 1 436 257 53 66 chr1 143939373 143939525 -98724828 - L2 LINE L2 -9 3263 3114 1755 205 89 12 chr1 143939909 143940054 -98724299 - MER63B DNA MER1_type -626 436 304 2427 84 0 7 chr1 143940054 143940363 -98723990 + AluSp SINE Alu 3 309 -4 1755 205 89 12 chr1 143940363 143940622 -98723731 - MER63B DNA MER1_type -758 304 1 2444 78 0 7 chr1 143940717 143941024 -98723329 + AluSc SINE Alu 1 305 -4 288 0 0 0 chr1 143941636 143941668 -98722685 + (A)n Simple_repeat Simple_repeat 1 32 0 2273 94 0 66 chr1 143941670 143941990 -98722363 + AluSq SINE Alu 2 300 -13 889 134 0 0 chr1 143941995 143942122 -98722231 + FLAM_C SINE Alu 2 128 -5 2056 130 0 26 chr1 143942127 143942461 -98721892 + AluSx SINE Alu 1 312 0 1924 98 0 0 chr1 143942467 143942703 -98721650 - AluSq SINE Alu -77 236 1 775 260 25 10 chr1 143943123 143943319 -98721034 + MIR SINE MIR 47 245 -17 624 116 12 0 chr1 143943658 143943744 -98720609 + FLAM SINE Alu 39 125 -18 26 23 0 23 chr1 143943744 143943772 -98720581 + AT_rich Low_complexity Low_complexity 1 29 -14 2217 138 0 0 chr1 143943772 143944076 -98720277 + AluSx SINE Alu 3 306 -6 26 23 0 23 chr1 143944076 143944091 -98720262 + AT_rich Low_complexity Low_complexity 29 43 0 1562 79 9 5 chr1 143944407 143944643 -98719710 + L1PB1 LINE L1 5936 6172 0 2296 95 7 0 chr1 143944730 143945025 -98719328 + AluSx SINE Alu 5 301 -11 2424 61 40 0 chr1 143945135 143945431 -98718922 - AluY SINE Alu -3 308 1 1058 135 130 0 chr1 143945548 143945756 -98718597 + L1MA6 LINE L1 6065 6299 -1 282 221 116 42 chr1 143945962 143946057 -98718296 - L2 LINE L2 -4 3309 3208 249 196 0 0 chr1 143946230 143946281 -98718072 + (TG)n Simple_repeat Simple_repeat 1 51 0 875 198 99 38 chr1 143946291 143946503 -98717850 - MIR SINE MIR 0 262 38 193 371 31 0 chr1 143946562 143946659 -98717694 - L2 LINE L2 -558 2756 2657 1010 36 0 0 chr1 143947124 143947234 -98717119 + AluSq/x SINE Alu 16 125 -187 2296 104 3 0 chr1 143947244 143947542 -98716811 + AluSp SINE Alu 1 299 -14 592 296 185 35 chr1 143947803 143948692 -98715661 - L2 LINE L2 -3 3310 2062 266 285 60 108 chr1 143948820 143948974 -98715379 - L2 LINE L2 -1227 2087 1927 2313 89 17 0 chr1 143948974 143949265 -98715088 + AluSq SINE Alu 1 296 -17 207 69 0 0 chr1 143949272 143949301 -98715052 + (CA)n Simple_repeat Simple_repeat 2 30 0 266 285 60 108 chr1 143949301 143949387 -98714966 - L2 LINE L2 -1393 1921 1851 834 167 0 0 chr1 143949412 143949538 -98714815 + FLAM_C SINE Alu 1 126 -7 1337 192 129 15 chr1 143949562 143949662 -98714691 + AluJb SINE Alu 1 88 -214 2433 64 0 3 chr1 143949662 143949958 -98714395 + AluY SINE Alu 1 295 -16 1509 153 0 0 chr1 143949958 143950173 -98714180 + AluJb SINE Alu 82 297 -15 1337 192 129 15 chr1 143950173 143950342 -98714011 + AluJb SINE Alu 87 302 0 2342 85 10 10 chr1 143950713 143951018 -98713335 + AluSx SINE Alu 7 311 -1 2443 72 3 13 chr1 143951119 143951426 -98712927 - AluSc SINE Alu -5 304 1 225 214 0 0 chr1 143951597 143951639 -98712714 + L1ME LINE L1 5154 5195 -951 332 279 46 57 chr1 143951661 143951910 -98712443 + L1ME LINE L1 5267 5513 -651 2311 112 0 7 chr1 143952177 143952482 -98711871 - AluSx SINE Alu -9 303 1 3300 18 0 0 chr1 143952680 143953060 -98711293 - L1PA2 LINE L1 -1 6154 5775 22 0 0 0 chr1 143953208 143953230 -98711123 + GC_rich Low_complexity Low_complexity 1 22 0 2313 120 0 0 chr1 143953509 143953817 -98710536 - AluSx SINE Alu -4 308 1 305 263 50 106 chr1 143953821 143953981 -98710372 + L2 LINE L2 3163 3313 0 1869 128 0 0 chr1 143953981 143954232 -98710121 + AluSx SINE Alu 45 295 -17 801 169 0 0 chr1 143954234 143954386 -98709967 + FLAM_C SINE Alu 1 152 0 449 263 121 45 chr1 143954545 143954752 -98709601 + L2 LINE L2 2777 3001 -312 2060 118 11 3 chr1 143954752 143955066 -98709287 + AluSx SINE Alu 3 318 0 449 263 121 45 chr1 143955066 143955138 -98709215 + L2 LINE L2 3001 3066 -247 936 205 0 0 chr1 143955158 143955319 -98709034 - FRAM SINE Alu -5 171 11 224 213 93 53 chr1 143955369 143955444 -98708909 + L2 LINE L2 3176 3253 -60 2348 90 6 13 chr1 143955712 143956024 -98708329 + AluSg SINE Alu 1 310 0 623 226 151 11 chr1 143956102 143956288 -98708065 - MIR SINE MIR -1 261 50 1060 134 43 0 chr1 143956295 143956459 -98707894 + AluJb SINE Alu 135 305 -7 405 0 0 0 chr1 143958824 143958869 -98705484 + (CA)n Simple_repeat Simple_repeat 2 46 0 799 268 40 4 chr1 143959820 143960070 -98704283 + MIR SINE MIR 4 262 0 233 250 67 0 chr1 143960133 143960193 -98704160 + MIR3 SINE MIR 145 208 0 2314 105 7 0 chr1 143961434 143961739 -98702614 - AluSx SINE Alu -5 307 1 1772 155 7 52 chr1 143962263 143962448 -98701905 - AluJo SINE Alu -17 295 128 2585 53 0 7 chr1 143962448 143962747 -98701606 + AluY SINE Alu 2 298 -13 1772 155 7 52 chr1 143962747 143962870 -98701483 - AluJo SINE Alu -184 128 1 190 312 229 0 chr1 143962893 143963002 -98701351 - L3b LINE CR1 -126 1457 1324 2004 140 0 3 chr1 143963092 143963384 -98700969 + AluJb SINE Alu 1 291 -21 2413 106 3 0 chr1 143963388 143963699 -98700654 + AluSx SINE Alu 1 312 0 22 35 0 0 chr1 143963812 143963841 -98700512 + AT_rich Low_complexity Low_complexity 1 29 0 1330 243 46 72 chr1 143964021 143964524 -98699829 - L2 LINE L2 0 3313 2824 2480 68 7 0 chr1 143964584 143964879 -98699474 + AluSp SINE Alu 1 297 -16 2036 119 49 3 chr1 143965152 143965437 -98698916 + AluSq SINE Alu 1 298 -15 2368 101 3 0 chr1 143965623 143965921 -98698432 + AluSp SINE Alu 5 303 -10 2514 81 0 3 chr1 143965922 143966231 -98698122 + AluY SINE Alu 1 308 -3 183 80 0 0 chr1 143966243 143966268 -98698085 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 191 294 88 0 chr1 143966341 143966409 -98697944 + MIR SINE MIR 34 107 -155 * 673 313 119 23 chr1 143966403 143966962 -98697391 - L2 LINE L2 -8 3305 2694 454 264 0 33 chr1 143966944 143967065 -98697288 - L2 LINE L2 -1 3312 3196 * 330 219 62 21 chr1 143967057 143967153 -98697200 + MIR SINE MIR 157 256 -6 * 197 345 156 38 chr1 143967527 143968161 -98696192 - L2 LINE L2 -518 2796 2088 181 296 0 0 chr1 143968143 143968187 -98696166 + MER5A DNA MER1_type 114 157 -32 * 472 122 0 43 chr1 143968222 143968337 -98696016 + (GAA)n Simple_repeat Simple_repeat 2 111 0 380 216 112 16 chr1 143968614 143968739 -98695614 + L1ME LINE L1 5560 5696 -425 2283 99 0 0 chr1 143968802 143969094 -98695259 + AluSg SINE Alu 11 302 -8 1897 163 7 7 chr1 143971175 143971469 -98692884 + AluJb SINE Alu 1 294 -18 2538 57 3 0 chr1 143972151 143972449 -98691904 - AluY SINE Alu -12 299 1 399 232 95 49 chr1 143972831 143973002 -98691351 - MIR SINE MIR -64 198 21 307 299 106 18 chr1 143974147 143974295 -98690058 + MIR3 SINE MIR 3 163 -66 2483 43 0 0 chr1 143974543 143974821 -98689532 + AluY SINE Alu 21 298 -13 463 233 0 0 chr1 143974940 143975030 -98689323 + MER5A DNA MER1_type 17 106 -83 1903 103 62 10 chr1 143976164 143976454 -98687899 + AluSx SINE Alu 1 305 -7 866 239 10 0 chr1 143976478 143976675 -98687678 - AluJo SINE Alu 0 312 114 7472 44 48 2 chr1 143976813 143977761 -98686592 - LTR13 LTR ERVK -16 991 1 4338 143 39 28 chr1 143977865 143978721 -98685632 + L1MB5 LINE L1 5296 6160 -14 2292 119 0 3 chr1 143978723 143979034 -98685319 - AluSx SINE Alu -2 310 1 254 258 191 11 chr1 143979046 143979135 -98685218 + L2 LINE L2 2236 2340 -974 1644 146 26 54 chr1 143979136 143979205 -98685148 + MLT2C1 LTR ERVL 1 70 -327 2149 121 3 26 chr1 143979205 143979510 -98684843 + AluSx SINE Alu 1 298 -14 1644 146 26 54 chr1 143979510 143979789 -98684564 + MLT2C1 LTR ERVL 70 339 -58 2289 130 0 0 chr1 143979806 143980107 -98684246 + AluSx SINE Alu 1 301 -11 216 173 67 19 chr1 143980108 143980212 -98684141 + (TA)n Simple_repeat Simple_repeat 2 110 0 1882 198 55 10 chr1 143980212 143980680 -98683673 + LTR22 LTR ERVK 1 458 0 5670 115 35 11 chr1 143980680 143981223 -98683130 + HERVK22 LTR ERVK 1 575 -6262 2369 77 10 3 chr1 143981223 143981521 -98682832 - AluSp SINE Alu -13 300 1 5670 115 35 11 chr1 143981521 143981861 -98682492 + HERVK22 LTR ERVK 575 905 -5932 * 19033 88 18 17 chr1 143981858 143982203 -98682150 + HERVK22 LTR ERVK 2329 2672 -4165 2848 16 0 3 chr1 143982203 143982515 -98681838 - AluYa5 SINE Alu 0 311 1 19033 88 18 17 chr1 143982515 143984918 -98679435 + HERVK22 LTR ERVK 2672 5079 -1758 1992 134 0 0 chr1 143984888 143985301 -98679052 + HERVKC4 LTR ERVK 3172 6837 0 * 1963 157 62 17 chr1 143985301 143985622 -98678731 + LTR22 LTR ERVK 1 350 -108 2354 78 3 26 chr1 143985622 143985928 -98678425 + AluY SINE Alu 1 299 -12 1963 157 62 17 chr1 143985928 143986043 -98678310 + LTR22 LTR ERVK 350 458 0 2164 100 55 0 chr1 143986068 143986180 -98678173 + AluSg SINE Alu 1 105 -205 432 0 0 0 chr1 143986180 143986228 -98678125 + (CA)n Simple_repeat Simple_repeat 1 48 0 2164 100 55 0 chr1 143986228 143986405 -98677948 + AluSg SINE Alu 105 306 -4 460 138 149 11 chr1 143986410 143986497 -98677856 + FLAM_C SINE Alu 36 134 -9 2076 124 20 10 chr1 143986498 143986797 -98677556 + AluSx SINE Alu 1 302 -10 1503 172 7 28 chr1 143986807 143986932 -98677421 + AluJo SINE Alu 12 138 -174 2207 88 0 10 chr1 143986932 143987255 -98677098 + AluSp SINE Alu 3 296 -17 1503 172 7 28 chr1 143987255 143987419 -98676934 + AluJo SINE Alu 138 295 -17 7710 67 9 1 chr1 143987504 143988465 -98675888 - LTR5 LTR ERVK 0 969 1 649 196 54 49 chr1 143988487 143988541 -98675812 + Tigger2a DNA MER2_type 1 53 -2655 2368 78 0 0 chr1 143988541 143988836 -98675517 - AluSx SINE Alu -17 295 1 649 196 54 49 chr1 143988836 143988965 -98675388 + Tigger2a DNA MER2_type 53 185 -249 856 180 12 12 chr1 143988965 143989132 -98675221 - FRAM SINE Alu 0 40 1 1590 160 24 14 chr1 143989191 143989479 -98674874 + AluJo SINE Alu 5 295 -17 1742 111 0 0 chr1 143989492 143989735 -98674618 + AluSq SINE Alu 1 243 -70 8078 55 1 0 chr1 143989735 143990703 -98673650 - LTR5 LTR ERVK 0 969 1 419 78 0 0 chr1 143990703 143990754 -98673599 + AluSq SINE Alu 236 286 -24 492 18 0 0 chr1 143990755 143990812 -98673541 + (CA)n Simple_repeat Simple_repeat 2 58 0 1614 143 0 4 chr1 143990812 143991057 -98673296 - AluSq SINE Alu -69 244 1 240 35 0 0 chr1 143991057 143991086 -98673267 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr1 143992187 143992210 -98672143 + AT_rich Low_complexity Low_complexity 1 23 0 242 351 18 24 chr1 143993602 143993612 -98670741 + (CCCCAA)n Simple_repeat Simple_repeat 6 15 -154 1491 151 28 82 chr1 143993612 143993929 -98670424 - AluJb SINE Alu -12 300 1 242 351 18 24 chr1 143993929 143994083 -98670270 + (CCCCAA)n Simple_repeat Simple_repeat 15 169 0 210 305 112 27 chr1 143995265 143995452 -98668901 + L2 LINE L2 1047 1249 -2065 * 401 309 123 12 chr1 143995438 143995690 -98668663 + L2 LINE L2 3034 3313 0 463 356 38 48 chr1 143995742 143995803 -98668550 + L2 LINE L2 1255 1315 -1999 2140 98 3 7 chr1 143995803 143996098 -98668255 - AluSq SINE Alu -19 294 1 463 356 38 48 chr1 143996098 143996701 -98667652 + L2 LINE L2 1315 1912 -1402 * 608 222 22 7 chr1 143996699 143996834 -98667519 + L2 LINE L2 3136 3272 0 639 303 71 0 chr1 143997220 143997418 -98666935 + MIR SINE MIR 51 262 0 2106 93 7 0 chr1 143997510 143997841 -98666512 + AluSx SINE Alu 1 333 0 2118 102 0 3 chr1 143997842 143998132 -98666221 + AluY SINE Alu 1 291 -20 276 53 0 0 chr1 143998132 143998170 -98666183 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 2118 102 0 3 chr1 143998170 143998182 -98666171 + AluY SINE Alu 291 302 -9 1114 113 6 18 chr1 143998182 143998350 -98666003 + AluSq SINE Alu 134 299 -14 382 217 24 12 chr1 143998357 143998440 -98665913 + L2 LINE L2 3228 3311 -2 519 285 13 7 chr1 143998482 143998633 -98665720 + MIR3 SINE MIR 54 205 -3 391 248 86 17 chr1 143998678 143998795 -98665558 + MIR SINE MIR 43 167 -95 745 142 0 39 chr1 143998847 143998974 -98665379 - FLAM_C SINE Alu 0 143 22 1612 140 9 81 chr1 143998982 143999154 -98665199 - AluJb SINE Alu -11 301 118 2100 64 11 11 chr1 143999154 143999434 -98664919 - AluY SINE Alu -12 299 20 2150 90 13 0 chr1 143999441 143999742 -98664611 - AluSq SINE Alu -6 307 3 1612 140 9 81 chr1 143999742 143999883 -98664470 - AluJb SINE Alu -200 112 3 2089 105 3 0 chr1 143999894 144000180 -98664173 - AluSc SINE Alu -22 287 1 2448 57 0 16 chr1 144000206 144000522 -98663831 + AluY SINE Alu 1 311 0 2208 236 70 64 chr1 144000522 144000633 -98663720 + HAL1 LINE L1 91 200 -2307 186 43 0 0 chr1 144000633 144000656 -98663697 + (GA)n Simple_repeat Simple_repeat 2 24 0 2208 236 70 64 chr1 144000656 144001384 -98662969 + HAL1 LINE L1 200 935 -1572 246 261 6 42 chr1 144001367 144001402 -98662951 + HAL1 LINE L1 881 916 -1591 * 2244 88 0 7 chr1 144001402 144001699 -98662654 + AluSx SINE Alu 1 295 -17 2283 102 0 9 chr1 144001702 144002017 -98662336 + AluSx SINE Alu 1 312 0 246 261 6 42 chr1 144002017 144002142 -98662211 + HAL1 LINE L1 918 1039 -1468 502 172 231 41 chr1 144002234 144002403 -98661950 + L1MC5 LINE L1 7305 7505 -456 1863 144 47 3 chr1 144002421 144002719 -98661634 - AluJb SINE Alu -1 311 1 1093 165 119 0 chr1 144002753 144002947 -98661406 + AluJo SINE Alu 6 222 -90 2246 115 0 0 chr1 144002967 144003279 -98661074 - AluSx SINE Alu 0 312 1 433 221 38 15 chr1 144003311 144003442 -98660911 + HAL1 LINE L1 1087 1220 -1287 504 186 97 9 chr1 144003460 144003573 -98660780 + L2 LINE L2 3186 3308 -5 883 143 0 0 chr1 144003583 144003716 -98660637 + AluJb SINE Alu 1 133 -179 2046 138 0 0 chr1 144003719 144004023 -98660330 + AluSx SINE Alu 1 304 -8 2605 201 58 117 chr1 144004027 144004207 -98660146 + HAL1 LINE L1 1284 1473 -1034 269 186 0 0 chr1 144004207 144004250 -98660103 + MER66A LTR ERV1 296 338 -140 2605 201 58 117 chr1 144004250 144004825 -98659528 + HAL1 LINE L1 1473 2013 -494 2231 115 0 0 chr1 144004825 144005137 -98659216 + AluSx SINE Alu 1 312 0 2605 201 58 117 chr1 144005137 144005339 -98659014 + HAL1 LINE L1 2013 2225 -282 735 259 25 0 chr1 144005368 144005526 -98658827 + MER63A DNA MER1_type 49 210 0 850 220 62 62 chr1 144005530 144005803 -98658550 + HAL1 LINE L1 2225 2497 -10 1736 154 22 22 chr1 144005859 144006171 -98658182 - AluJo SINE Alu 0 312 1 2404 81 3 0 chr1 144006176 144006486 -98657867 - AluSx SINE Alu -1 311 1 2254 93 0 0 chr1 144007644 144007945 -98656408 - AluSc SINE Alu -8 301 1 250 294 87 16 chr1 144008195 144008321 -98656032 + MIR SINE MIR 97 231 -31 242 222 30 30 chr1 144008620 144008719 -98655634 + (CCCCG)n Simple_repeat Simple_repeat 1 99 0 191 152 22 0 chr1 144008735 144008781 -98655572 + (CCCCG)n Simple_repeat Simple_repeat 1 47 0 283 301 75 15 chr1 144009188 144009321 -98655032 + L2 LINE L2 3169 3309 -4 193 347 69 0 chr1 144009788 144009932 -98654421 + L2 LINE L2 2890 3043 -229 1542 143 93 11 chr1 144009995 144010149 -98654204 - AluJb SINE Alu -10 302 162 184 29 29 29 chr1 144010149 144010183 -98654170 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1542 143 93 11 chr1 144010183 144010307 -98654046 - AluJb SINE Alu -150 162 1 1860 139 0 26 chr1 144010579 144010881 -98653472 - AluSx SINE Alu -9 303 10 648 213 31 0 chr1 144010885 144011012 -98653341 - FLAM_A SINE Alu -1 132 2 241 347 21 11 chr1 144012051 144012146 -98652207 + MIR SINE MIR 6 101 -161 195 254 111 16 chr1 144012283 144012346 -98652007 - MER5A DNA MER1_type -113 76 8 2000 123 10 0 chr1 144012450 144012742 -98651611 + AluSx SINE Alu 1 295 -17 2092 94 42 0 chr1 144012902 144013188 -98651165 + AluSx SINE Alu 1 298 -14 266 318 73 9 chr1 144014414 144014524 -98649829 + L2 LINE L2 3107 3223 -49 25 0 0 0 chr1 144016743 144016768 -98647585 + AT_rich Low_complexity Low_complexity 1 25 0 185 293 0 0 chr1 144017149 144017207 -98647146 - L3b LINE CR1 -184 1399 1342 290 222 22 56 chr1 144017738 144017828 -98646525 - MIR SINE MIR -74 188 102 2131 112 0 16 chr1 144018069 144018383 -98645970 - AluSq SINE Alu -4 309 1 1112 171 11 0 chr1 144018621 144018797 -98645556 + MER45A DNA AcHobo 1 178 0 216 300 54 46 chr1 144018799 144018929 -98645424 - MIR3 SINE MIR -4 204 74 210 222 0 0 chr1 144019906 144019951 -98644402 + C-rich Low_complexity Low_complexity 3 47 0 186 306 108 18 chr1 144020709 144020820 -98643533 + MIR3 SINE MIR 34 154 -54 2406 80 3 0 chr1 144020832 144021144 -98643209 + AluSp SINE Alu 1 313 0 269 351 97 0 chr1 144021173 144021307 -98643046 + MIR3 SINE MIR 1 147 -61 197 326 11 0 chr1 144023354 144023443 -98640910 + L2 LINE L2 2717 2806 -508 269 284 59 20 chr1 144023685 144023787 -98640566 + MIR SINE MIR 81 186 -76 714 151 158 55 chr1 144023860 144024006 -98640347 + FAM SINE Alu 10 170 -15 493 236 101 74 chr1 144024039 144024297 -98640056 - L2 LINE L2 0 3313 3049 1864 126 7 0 chr1 144024313 144024590 -98639763 + AluSx SINE Alu 25 303 -9 919 183 6 6 chr1 144024604 144024773 -98639580 + AluJb SINE Alu 137 305 -7 2619 247 107 21 chr1 144024780 144025255 -98639098 - L2 LINE L2 -256 3057 2624 2054 99 3 3 chr1 144025255 144025574 -98638779 - AluSx SINE Alu 0 319 1 2619 247 107 21 chr1 144025574 144026008 -98638345 - L2 LINE L2 -689 2624 2070 342 301 28 21 chr1 144026028 144026171 -98638182 - L2 LINE L2 -1357 1957 1814 191 149 64 0 chr1 144026173 144026220 -98638133 - L2 LINE L2 -1987 1327 1278 606 96 12 0 chr1 144026255 144026338 -98638015 - AluSg1 SINE Alu -185 124 41 835 156 0 22 chr1 144026364 144026499 -98637854 - FLAM_C SINE Alu -1 132 1 762 155 0 31 chr1 144026533 144026662 -98637691 + FLAM_A SINE Alu 18 142 0 901 144 0 0 chr1 144026684 144026816 -98637537 + AluSx SINE Alu 2 133 -179 230 157 0 20 chr1 144026816 144026867 -98637486 + A-rich Low_complexity Low_complexity 4 53 0 1012 180 0 0 chr1 144026870 144027042 -98637311 + AluSx SINE Alu 136 307 -5 1905 142 10 3 chr1 144027050 144027353 -98637000 + AluSx SINE Alu 1 305 -7 38 0 0 0 chr1 144027385 144027423 -98636930 + AT_rich Low_complexity Low_complexity 1 38 0 2299 60 0 0 chr1 144027423 144027743 -98636610 + AluY SINE Alu 1 320 0 1795 118 30 30 chr1 144027762 144028059 -98636294 - AluSg SINE Alu -9 301 5 532 162 10 20 chr1 144028112 144028211 -98636142 - FLAM_A SINE Alu -44 98 1 234 300 33 50 chr1 144029199 144029319 -98635034 + L2 LINE L2 3161 3278 -35 226 344 56 0 chr1 144029417 144029507 -98634846 + L2 LINE L2 3177 3271 -1 405 0 0 0 chr1 144029728 144029773 -98634580 + (TG)n Simple_repeat Simple_repeat 2 46 0 186 43 0 0 chr1 144030328 144030351 -98634002 + (TC)n Simple_repeat Simple_repeat 1 23 0 597 237 0 7 chr1 144033217 144033356 -98630997 - MIR SINE MIR -74 188 51 191 256 23 0 chr1 144034376 144034419 -98629934 - MIR SINE MIR -61 147 104 201 39 0 0 chr1 144034528 144034554 -98629799 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 181 309 62 21 chr1 144035565 144035662 -98628691 - MIR3 SINE MIR -11 197 97 1145 114 0 23 chr1 144035736 144035911 -98628442 + AluSg/x SINE Alu 122 292 -18 184 393 27 44 chr1 144036116 144036299 -98628054 - L2 LINE L2 -356 2958 2779 2347 97 3 0 chr1 144036333 144036643 -98627710 - AluY SINE Alu 0 311 1 690 191 0 0 chr1 144036679 144036794 -98627559 + AluJo/FLAM SINE Alu 1 115 -187 2360 103 0 0 chr1 144036795 144037106 -98627247 + AluSx SINE Alu 2 312 0 2291 103 0 0 chr1 144037435 144037746 -98626607 - AluSx SINE Alu -1 311 1 2050 124 7 10 chr1 144037747 144038046 -98626307 - AluSp SINE Alu -15 298 1 1826 153 13 19 chr1 144038315 144038628 -98625725 - AluJb SINE Alu -1 311 1 2324 73 0 0 chr1 144038631 144038944 -98625409 - AluY SINE Alu 0 313 1 432 277 7 29 chr1 144041127 144041264 -98623089 - MIR3 SINE MIR -7 201 68 592 260 138 0 chr1 144041707 144041888 -98622465 - MIR SINE MIR -1 261 56 2064 144 3 0 chr1 144041948 144042247 -98622106 + AluSx SINE Alu 1 300 -12 1260 119 0 0 chr1 144042248 144042424 -98621929 + AluSg/x SINE Alu 134 309 -3 1738 118 74 20 chr1 144043906 144044227 -98620126 - AluSx SINE Alu 0 312 1 2072 118 0 3 chr1 144044231 144044528 -98619825 - AluSx SINE Alu -16 296 1 2290 111 0 0 chr1 144045347 144045654 -98618699 + AluSg SINE Alu 1 307 -3 454 331 43 0 chr1 144047594 144047733 -98616620 - MIR3 SINE MIR -21 187 43 769 108 0 17 chr1 144047798 144047918 -98616435 - AluSx SINE Alu -1 311 194 1045 92 0 7 chr1 144047919 144048061 -98616292 - AluSx SINE Alu -171 141 1 1726 152 18 0 chr1 144048613 144048890 -98615463 + AluJb SINE Alu 29 310 -2 1580 151 68 4 chr1 144049198 144049476 -98614877 - AluJo SINE Alu -5 307 12 228 360 64 24 chr1 144049614 144049739 -98614614 + MIR3 SINE MIR 6 135 -73 1847 153 0 42 chr1 144050375 144050518 -98613835 + AluJb SINE Alu 3 150 -162 2445 76 0 0 chr1 144050518 144050821 -98613532 + AluSc SINE Alu 1 303 -6 1847 153 0 42 chr1 144050821 144050990 -98613363 + AluJb SINE Alu 150 302 -10 1442 189 3 78 chr1 144051811 144052144 -98612209 + AluJo SINE Alu 2 309 -3 1408 134 13 17 chr1 144052170 144052401 -98611952 + AluJb SINE Alu 65 294 -18 2143 114 3 0 chr1 144052401 144052699 -98611654 + AluSq SINE Alu 1 299 -14 1962 127 0 52 chr1 144052706 144053013 -98611340 + AluSx SINE Alu 1 291 -21 2047 97 4 0 chr1 144053072 144053339 -98611014 + AluSp SINE Alu 1 268 -45 232 232 0 18 chr1 144053569 144053625 -98610728 + (GGGTG)n Simple_repeat Simple_repeat 5 59 0 24 32 0 0 chr1 144054587 144054618 -98609735 + GC_rich Low_complexity Low_complexity 1 31 0 207 301 0 44 chr1 144055508 144055621 -98608732 + GA-rich Low_complexity Low_complexity 4 111 0 1909 128 0 31 chr1 144056594 144056923 -98607430 - AluSx SINE Alu 0 320 1 1344 184 137 0 chr1 144057545 144057801 -98606552 - AluJo SINE Alu -21 291 1 264 301 75 0 chr1 144058106 144058199 -98606154 + MIR SINE MIR 54 153 -55 2152 117 7 0 chr1 144058468 144058767 -98605586 - AluSq SINE Alu -12 301 1 217 227 206 41 chr1 144058847 144058944 -98605409 + L2 LINE L2 3137 3249 -23 2134 110 0 0 chr1 144058952 144059242 -98605111 - AluSx SINE Alu -22 290 1 824 160 8 8 chr1 144059242 144059373 -98604980 - AluJo/FLAM SINE Alu -171 131 1 315 218 115 0 chr1 144059404 144059482 -98604871 + MIR SINE MIR 61 147 -115 917 182 10 29 chr1 144059576 144059785 -98604568 - L2 LINE L2 0 3313 3109 1682 158 24 24 chr1 144059786 144060078 -98604275 + AluJb SINE Alu 1 292 -20 225 174 0 0 chr1 144060080 144060126 -98604227 - LTR66 LTR ERVL -171 439 394 189 107 0 0 chr1 144060126 144060154 -98604199 + (CATA)n Simple_repeat Simple_repeat 4 31 0 287 241 181 29 chr1 144060218 144060398 -98603955 - MIR SINE MIR -56 206 5 514 243 85 69 chr1 144060756 144060911 -98603442 - MIR SINE MIR -10 252 92 1104 225 9 0 chr1 144060911 144061124 -98603229 - MER20 DNA MER1_type -3 216 2 514 243 85 69 chr1 144061124 144061157 -98603196 - MIR SINE MIR -170 92 61 1804 112 63 31 chr1 144061158 144061444 -98602909 - AluSx SINE Alu -17 295 1 406 286 27 92 chr1 144061742 144061869 -98602484 - MIR SINE MIR -18 244 131 1743 118 151 4 chr1 144061869 144062140 -98602213 + AluSx SINE Alu 1 311 -1 406 286 27 92 chr1 144062140 144062197 -98602156 - MIR SINE MIR -131 131 72 287 277 48 0 chr1 144062451 144062534 -98601819 - MIR SINE MIR -57 151 65 454 305 12 31 chr1 144062774 144062949 -98601404 - MIR SINE MIR -65 143 20 279 275 33 0 chr1 144063232 144063323 -98601030 + G-rich Low_complexity Low_complexity 2 95 0 278 189 0 137 chr1 144063727 144063786 -98600567 + MER81 DNA DNA 1 44 -70 2183 54 0 54 chr1 144063786 144064099 -98600254 - AluY SINE Alu -15 296 1 278 189 0 137 chr1 144064099 144064134 -98600219 + MER81 DNA DNA 44 82 -32 497 234 44 7 chr1 144064191 144064328 -98600025 - MER69 DNA AcHobo -1079 147 6 246 261 43 14 chr1 144064606 144064675 -98599678 - MIR3 SINE MIR -6 202 132 581 302 98 44 chr1 144068046 144068265 -98596088 + L2 LINE L2 2470 2676 -596 1542 189 6 29 chr1 144068265 144068578 -98595775 - AluJo SINE Alu -6 306 1 581 302 98 44 chr1 144068578 144069036 -98595317 + L2 LINE L2 2676 3258 -14 290 313 0 0 chr1 144069260 144069340 -98595013 - MIR SINE MIR 0 262 183 194 314 19 57 chr1 144069554 144069659 -98594694 - MIR SINE MIR -88 174 74 305 286 50 67 chr1 144069771 144069890 -98594463 - MER5B DNA MER1_type -1 177 61 1803 127 65 14 chr1 144069890 144070182 -98594171 - AluSx SINE Alu -5 307 1 468 194 0 39 chr1 144070186 144070289 -98594064 - FLAM_A SINE Alu -17 125 27 456 298 99 7 chr1 144070297 144070438 -98593915 - MIR SINE MIR -108 154 1 238 259 19 0 chr1 144070442 144070496 -98593857 - MIR SINE MIR -112 96 42 230 295 200 0 chr1 144071093 144071188 -98593165 - MIR SINE MIR -69 193 80 519 320 20 0 chr1 144071431 144071581 -98592772 + MIR3 SINE MIR 30 182 -26 267 103 0 0 chr1 144071814 144071853 -98592500 + (CA)n Simple_repeat Simple_repeat 1 39 0 484 245 115 65 chr1 144072165 144072365 -98591988 + MIR SINE MIR 36 245 -17 186 354 13 0 chr1 144073108 144073187 -98591166 - L2 LINE L2 0 3313 3234 212 267 12 35 chr1 144073212 144073298 -98591055 - L2 LINE L2 -182 3090 3007 659 269 33 0 chr1 144073299 144073481 -98590872 - MIR SINE MIR 0 262 75 1536 59 0 82 chr1 144074130 144074349 -98590004 + AluSq SINE Alu 3 203 -110 212 240 0 0 chr1 144074424 144074474 -98589879 - L2 LINE L2 -2 3311 3262 2069 89 17 26 chr1 144074556 144074858 -98589495 + AluSx SINE Alu 1 299 -13 1115 125 12 0 chr1 144074858 144075018 -98589335 + AluSg/x SINE Alu 134 295 -17 2088 95 7 40 chr1 144075136 144075440 -98588913 + AluSg SINE Alu 1 294 -16 444 227 73 0 chr1 144075451 144075561 -98588792 - L2 LINE L2 -246 3026 2909 506 319 153 40 chr1 144075981 144076179 -98588174 - L2 LINE L2 -11 3261 3087 2052 134 3 0 chr1 144076179 144076485 -98587868 + AluJb SINE Alu 1 307 -5 506 319 153 40 chr1 144076485 144076595 -98587758 - L2 LINE L2 -185 3087 2991 2102 99 13 16 chr1 144076595 144076907 -98587446 + AluSx SINE Alu 1 311 -1 506 319 153 40 chr1 144076907 144077001 -98587352 - L2 LINE L2 -281 2991 2812 2086 130 0 3 chr1 144077089 144077388 -98586965 - AluSx SINE Alu -14 298 1 839 172 49 49 chr1 144077388 144077551 -98586802 - FRAM SINE Alu -18 158 1 636 254 0 0 chr1 144077567 144077677 -98586676 + AluSq/x SINE Alu 1 110 -203 65 0 0 0 chr1 144077702 144077767 -98586586 + GC_rich Low_complexity Low_complexity 1 65 0 240 105 0 35 chr1 144077767 144077824 -98586529 + (CCCCCG)n Simple_repeat Simple_repeat 3 57 0 36 0 0 0 chr1 144077824 144077860 -98586493 + GC_rich Low_complexity Low_complexity 1 36 0 407 188 28 44 chr1 144077860 144078041 -98586312 + C-rich Low_complexity Low_complexity 3 180 0 389 175 35 29 chr1 144077963 144078134 -98586219 + (CCGCG)n Simple_repeat Simple_repeat 1 172 0 * 344 70 0 35 chr1 144078234 144078291 -98586062 + Alu SINE Alu 242 296 -5 1929 153 0 7 chr1 144078372 144078673 -98585680 - AluSx SINE Alu -13 299 1 22 0 0 0 chr1 144078682 144078704 -98585649 + AT_rich Low_complexity Low_complexity 1 22 0 753 147 17 0 chr1 144078704 144078820 -98585533 - FLAM_C SINE Alu -25 118 1 2119 123 0 3 chr1 144078845 144079146 -98585207 + AluSx SINE Alu 1 300 -12 2230 63 0 17 chr1 144079146 144079476 -98584877 + AluY SINE Alu 1 326 0 642 186 53 9 chr1 144079488 144079601 -98584752 + AluJo/FLAM SINE Alu 1 118 -184 1890 73 36 90 chr1 144079602 144079934 -98584419 - AluSp SINE Alu 0 316 1 23 33 0 0 chr1 144079941 144079971 -98584382 + AT_rich Low_complexity Low_complexity 1 30 0 625 222 7 0 chr1 144079980 144080115 -98584238 - MER2 DNA MER2_type -209 136 1 1986 125 67 9 chr1 144080123 144080450 -98583903 - MER7A DNA MER2_type 0 346 3 316 276 37 0 chr1 144080459 144080593 -98583760 + L1MC4 LINE L1 7902 8040 -2 185 217 22 0 chr1 144080754 144080800 -98583553 - L2 LINE L2 -93 3179 3133 2287 96 0 0 chr1 144081105 144081406 -98582947 - AluSx SINE Alu -11 301 1 329 367 35 76 chr1 144082005 144082321 -98582032 - L1M4c LINE L1 -3989 2395 2093 437 309 74 17 chr1 144082845 144083020 -98581333 + MIR SINE MIR 20 204 -58 296 358 50 17 chr1 144084256 144084376 -98579977 + MIR3 SINE MIR 10 133 -75 2003 92 95 0 chr1 144085433 144085717 -98578636 - AluSx SINE Alu -1 311 1 190 374 20 30 chr1 144085878 144085977 -98578376 - L2 LINE L2 -20 3252 3155 1776 154 0 62 chr1 144086012 144086137 -98578216 + AluJo SINE Alu 3 134 -178 429 20 0 0 chr1 144086137 144086187 -98578166 + (TA)n Simple_repeat Simple_repeat 2 51 0 2373 85 0 0 chr1 144086187 144086492 -98577861 - AluSx SINE Alu -7 305 1 1776 154 0 62 chr1 144086492 144086690 -98577663 + AluJo SINE Alu 132 307 -5 2254 104 0 0 chr1 144086711 144087018 -98577335 + AluSg SINE Alu 1 307 -3 229 173 173 0 chr1 144087963 144088015 -98576338 - MIR SINE MIR -71 191 131 2362 69 0 3 chr1 144088780 144089083 -98575270 + AluY SINE Alu 1 302 -9 1744 183 3 13 chr1 144089860 144090172 -98574181 - AluJo SINE Alu -3 309 1 194 258 137 40 chr1 144090358 144090482 -98573871 + L3b LINE CR1 1277 1412 -171 1858 141 0 13 chr1 144090506 144090805 -98573548 + AluSx SINE Alu 1 295 -17 1928 115 7 3 chr1 144090807 144091095 -98573258 + AluSx SINE Alu 1 289 -23 31 0 0 0 chr1 144091108 144091139 -98573214 + AT_rich Low_complexity Low_complexity 1 31 0 2101 102 3 13 chr1 144091476 144091780 -98572573 + AluSq SINE Alu 1 301 -12 291 315 11 11 chr1 144092222 144092311 -98572042 - MIR SINE MIR -92 170 82 1448 230 93 23 chr1 144092828 144093267 -98571086 + Tigger8 DNA MER2_type 57 526 -140 828 141 186 50 chr1 144093295 144093494 -98570859 - AluJb SINE Alu -1 311 86 2266 94 0 0 chr1 144093682 144093979 -98570374 - AluSc SINE Alu -12 297 1 216 341 76 8 chr1 144094048 144094180 -98570173 - L2 LINE L2 -216 3056 2916 502 301 37 0 chr1 144094339 144094475 -98569878 + L2 LINE L2 3173 3313 0 769 239 77 24 chr1 144094507 144094754 -98569599 - MIR SINE MIR -2 260 1 2004 95 3 3 chr1 144094803 144095125 -98569228 + AluSx SINE Alu 1 322 0 1324 86 10 48 chr1 144095977 144096186 -98568167 + AluSq SINE Alu 113 313 0 1997 117 0 3 chr1 144096220 144096510 -98567843 + AluSg SINE Alu 1 289 -21 2242 96 0 7 chr1 144096902 144097205 -98567148 - AluY SINE Alu -10 301 1 2059 102 0 7 chr1 144097205 144097500 -98566853 - AluSq SINE Alu -20 293 1 402 195 0 0 chr1 144098022 144098109 -98566244 + (TG)n Simple_repeat Simple_repeat 1 87 0 2433 58 7 0 chr1 144098321 144098630 -98565723 + AluY SINE Alu 1 311 0 1005 151 36 0 chr1 144098760 144098926 -98565427 - AluSg/x SINE Alu -6 304 133 848 213 0 0 chr1 144099265 144099425 -98564928 + AluJb SINE Alu 137 296 -16 887 243 83 5 chr1 144099487 144099705 -98564648 - MIR SINE MIR 0 262 28 1406 109 4 30 chr1 144099808 144100038 -98564315 - AluY SINE Alu -5 306 83 591 165 0 29 chr1 144100087 144100214 -98564139 - L1MA10 LINE L1 0 6304 6178 1260 103 0 6 chr1 144100339 144100514 -98563839 - AluSg SINE Alu -112 198 25 405 232 5 63 chr1 144100558 144100748 -98563605 + CT-rich Low_complexity Low_complexity 1 179 0 1197 133 79 149 chr1 144101626 144101942 -98562411 + AluJo SINE Alu 1 294 -8 282 328 45 0 chr1 144102979 144103078 -98561275 + MIR SINE MIR 36 139 -69 438 234 179 0 chr1 144103241 144103425 -98560928 - MER112 DNA MER1_type -7 253 37 22 0 0 0 chr1 144103438 144103460 -98560893 + AT_rich Low_complexity Low_complexity 1 22 0 769 186 0 0 chr1 144103460 144103584 -98560769 - FLAM_C SINE Alu -18 125 2 2390 79 0 0 chr1 144103595 144103898 -98560455 - AluSg SINE Alu -7 303 1 293 115 19 19 chr1 144103901 144103953 -98560400 - MER112 DNA MER1_type -208 52 1 844 225 67 5 chr1 144104164 144104373 -98559980 + L2 LINE L2 2818 3039 -274 988 79 0 0 chr1 144104478 144104605 -98559748 + AluSg/x SINE Alu 171 297 -15 1518 155 76 10 chr1 144104605 144104896 -98559457 - AluJb SINE Alu -1 311 2 446 95 48 0 chr1 144104907 144104970 -98559383 - AluS SINE Alu -229 84 19 1856 50 4 17 chr1 144104970 144105208 -98559145 + AluY SINE Alu 68 302 -9 867 166 0 14 chr1 144105225 144105370 -98558983 + AluJo SINE Alu 35 177 -135 822 126 132 36 chr1 144105409 144105576 -98558777 + AluJb SINE Alu 129 311 -1 1252 173 93 0 chr1 144106427 144106675 -98557678 - AluJb SINE Alu -41 271 1 1994 134 3 0 chr1 144106726 144107025 -98557328 + AluSq SINE Alu 1 300 -13 2381 52 20 13 chr1 144107069 144107374 -98556979 + AluY SINE Alu 1 307 -4 2200 98 0 3 chr1 144107412 144107708 -98556645 + AluSq SINE Alu 1 295 -18 2921 168 49 62 chr1 144107821 144108518 -98555835 + L1MB7 LINE L1 5477 6164 -20 796 125 0 146 chr1 144108604 144108796 -98555557 + AluJo SINE Alu 34 197 -115 2060 90 12 47 chr1 144108849 144109170 -98555183 + AluSx SINE Alu 1 310 -2 2209 69 21 0 chr1 144110800 144111090 -98553263 + AluSg SINE Alu 2 297 -13 207 0 0 0 chr1 144111421 144111444 -98552909 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1313 116 124 50 chr1 144111445 144111703 -98552650 - AluSc SINE Alu -32 277 1 259 224 0 0 chr1 144112016 144112065 -98552288 - MER3 DNA MER1_type 0 209 161 727 185 0 132 chr1 144112065 144112254 -98552099 + FRAM SINE Alu 1 157 -19 310 111 0 0 chr1 144112265 144112310 -98552043 + MLT1A2 LTR MaLR 282 326 -48 611 226 51 0 chr1 144112329 144112466 -98551887 - MER3 DNA MER1_type -65 144 1 831 132 26 53 chr1 144112674 144112826 -98551527 + AluJb SINE Alu 22 169 -143 627 115 13 16 chr1 144112874 144113023 -98551330 - AluJb SINE Alu -117 195 14 201 94 0 0 chr1 144113030 144113062 -98551291 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 1376 163 119 4 chr1 144113065 144113342 -98551011 - AluJb SINE Alu -3 309 1 1446 112 19 0 chr1 144113361 144113576 -98550777 - AluSq SINE Alu -21 292 74 2199 88 20 0 chr1 144114169 144114464 -98549889 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr1 144114468 144114491 -98549862 + AT_rich Low_complexity Low_complexity 1 23 0 2359 74 0 0 chr1 144115413 144115710 -98548643 - AluY SINE Alu -13 298 2 189 0 0 0 chr1 144115767 144115788 -98548565 + (T)n Simple_repeat Simple_repeat 1 21 0 1984 102 0 7 chr1 144115982 144116291 -98548062 - AluSq SINE Alu 0 307 1 378 0 0 0 chr1 144116506 144116548 -98547805 + (TG)n Simple_repeat Simple_repeat 1 42 0 2057 129 7 0 chr1 144116549 144116858 -98547495 - AluSx SINE Alu -1 311 1 1933 117 45 0 chr1 144117764 144118055 -98546298 + AluSx SINE Alu 1 304 -8 1640 150 7 27 chr1 144118918 144119053 -98545300 + AluJo SINE Alu 5 141 -171 2418 44 0 17 chr1 144119053 144119351 -98545002 + AluY SINE Alu 4 296 -15 1640 150 7 27 chr1 144119351 144119509 -98544844 + AluJo SINE Alu 141 292 -20 2188 112 0 0 chr1 144119509 144119812 -98544541 + AluSx SINE Alu 3 305 -7 1769 93 19 16 chr1 144119893 144120151 -98544202 + AluY SINE Alu 21 279 -32 1572 62 0 0 chr1 144120153 144120345 -98544008 - AluY SINE Alu -119 192 1 878 219 58 31 chr1 144120833 144121057 -98543296 - MLT1C LTR MaLR -4 463 234 2375 11 50 0 chr1 144121178 144121457 -98542896 - AluYa5 SINE Alu -18 293 1 2047 117 7 3 chr1 144121936 144122235 -98542118 + AluSg SINE Alu 1 300 -10 559 66 26 0 chr1 144122238 144122314 -98542039 + AluY SINE Alu 219 296 -15 914 181 76 29 chr1 144123245 144123455 -98540898 - MER58A DNA MER1_type -4 220 1 1242 184 60 0 chr1 144123578 144123828 -98540525 + AluJo SINE Alu 26 290 -22 2211 66 10 3 chr1 144123934 144124223 -98540130 - AluY SINE Alu -20 291 1 2165 84 0 3 chr1 144124521 144124852 -98539501 - AluY SINE Alu 0 330 1 832 101 7 94 chr1 144124852 144125001 -98539352 - AluSq/x SINE Alu -177 136 1 25 0 0 0 chr1 144125001 144125026 -98539327 + AT_rich Low_complexity Low_complexity 1 25 0 448 256 48 87 chr1 144125078 144125118 -98539235 + MIR SINE MIR 2 42 -220 2083 96 28 7 chr1 144125118 144125409 -98538944 + AluSq SINE Alu 8 304 -9 448 256 48 87 chr1 144125409 144125575 -98538778 + MIR SINE MIR 42 200 -62 1565 163 108 3 chr1 144125608 144125903 -98538450 + MER7A DNA MER2_type 1 324 -22 963 140 26 28 chr1 144125908 144126150 -98538203 + AluSg SINE Alu 7 302 -10 252 0 0 0 chr1 144126768 144126796 -98537557 + (CCCCAG)n Simple_repeat Simple_repeat 1 28 0 2061 103 4 0 chr1 144128574 144128880 -98535473 + AluSx SINE Alu 1 307 0 2155 120 0 3 chr1 144128960 144129269 -98535084 + AluSx SINE Alu 1 308 -4 243 203 0 0 chr1 144129791 144129850 -98534503 + T-rich Low_complexity Low_complexity 1 59 0 1863 134 21 3 chr1 144131645 144131936 -98532417 - AluSx SINE Alu -16 296 1 1872 94 10 28 chr1 144131949 144132237 -98532116 - AluSc SINE Alu -26 283 1 2170 113 0 0 chr1 144134440 144134741 -98529612 - AluSx SINE Alu -11 301 1 2243 81 3 10 chr1 144134978 144135286 -98529067 - AluY SINE Alu -5 306 1 2152 107 0 0 chr1 144135518 144135818 -98528535 + AluSq SINE Alu 1 300 -13 2339 83 0 0 chr1 144135905 144136207 -98528146 - AluY SINE Alu -9 302 1 2315 66 7 7 chr1 144136268 144136572 -98527781 - AluY SINE Alu -7 304 1 318 252 67 50 chr1 144136631 144136750 -98527603 - L2 LINE L2 -4 3309 3189 1832 108 29 79 chr1 144136825 144137140 -98527213 + AluSx SINE Alu 1 299 -13 1637 160 0 14 chr1 144137249 144137554 -98526799 - AluJo SINE Alu 0 306 6 2321 96 3 6 chr1 144137588 144137902 -98526451 - AluSq SINE Alu 0 313 1 251 284 43 17 chr1 144137902 144138018 -98526335 + MER112 DNA MER1_type 141 259 -1 2159 98 0 3 chr1 144139182 144139478 -98524875 + AluSq SINE Alu 1 295 -18 1942 116 0 63 chr1 144139813 144140132 -98524221 - AluSx SINE Alu -11 301 3 2312 57 7 7 chr1 144140145 144140442 -98523911 - AluSx SINE Alu -15 297 1 198 238 49 107 chr1 144140661 144140783 -98523570 + L3b LINE CR1 1264 1378 -205 2274 91 3 7 chr1 144140818 144141127 -98523226 + AluSc SINE Alu 1 308 -1 2290 78 7 0 chr1 144141219 144141515 -98522838 + AluSg SINE Alu 1 298 -12 871 223 0 0 chr1 144141656 144141813 -98522540 + FRAM SINE Alu 1 157 -9 2094 132 157 5 chr1 144141825 144142195 -98522158 - MSTA LTR MaLR -2 426 1 221 167 0 0 chr1 144142241 144142283 -98522070 + T-rich Low_complexity Low_complexity 2 43 0 2322 60 13 10 chr1 144142331 144142633 -98521720 + AluY SINE Alu 1 303 -8 1620 98 0 4 chr1 144142704 144142929 -98521424 - AluSq SINE Alu -20 293 70 907 121 7 0 chr1 144143030 144143171 -98521182 - AluSg/x SINE Alu -29 281 140 8626 72 6 2 chr1 144143171 144144238 -98520115 - MER11C LTR ERVK 0 1071 1 810 182 0 0 chr1 144144253 144144385 -98519968 - FLAM_C SINE Alu -1 132 1 285 29 0 0 chr1 144144777 144144811 -98519542 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1716 110 4 0 chr1 144144835 144145080 -98519273 - AluSq SINE Alu -10 303 58 223 306 230 19 chr1 144145134 144145332 -98519021 + MIR SINE MIR 2 247 -15 2482 20 7 3 chr1 144145332 144145627 -98518726 + AluYa5 SINE Alu 1 296 -15 204 40 0 0 chr1 144145767 144145792 -98518561 + (TA)n Simple_repeat Simple_repeat 1 25 0 2156 87 0 0 chr1 144145792 144146078 -98518275 - AluY SINE Alu -25 286 1 2293 106 0 0 chr1 144146656 144146968 -98517385 - AluSx SINE Alu 0 312 1 828 213 12 0 chr1 144148857 144149026 -98515327 - FRAM SINE Alu -8 168 1 368 277 101 20 chr1 144150545 144150693 -98513660 - MIR SINE MIR -66 196 37 247 164 0 66 chr1 144152939 144153000 -98511353 + G-rich Low_complexity Low_complexity 3 59 0 215 258 23 55 chr1 144153585 144153713 -98510640 + (CGGGG)n Simple_repeat Simple_repeat 5 128 0 180 0 0 0 chr1 144155428 144155448 -98508905 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 180 225 25 0 chr1 144157276 144157316 -98507037 - L2 LINE L2 -1 3271 3231 821 169 0 0 chr1 144157773 144157897 -98506456 + FLAM_C SINE Alu 1 124 -19 23 33 0 0 chr1 144157904 144157934 -98506419 + AT_rich Low_complexity Low_complexity 1 30 0 2317 109 0 0 chr1 144158184 144158495 -98505858 - AluSx SINE Alu -1 311 1 217 295 16 0 chr1 144158789 144158850 -98505503 - L2 LINE L2 -1 3312 3251 1847 171 0 10 chr1 144158956 144159261 -98505092 + AluJb SINE Alu 3 304 -8 871 116 16 0 chr1 144160063 144160192 -98504161 - FLAM_C SINE Alu -2 131 1 2158 103 0 7 chr1 144160363 144160663 -98503690 - AluSx SINE Alu -14 298 1 256 295 6 44 chr1 144160862 144161045 -98503308 + GA-rich Low_complexity Low_complexity 2 177 0 364 188 0 0 chr1 144163662 144163731 -98500622 + LTR30 LTR ERV1 552 620 -102 216 97 0 0 chr1 144163739 144163770 -98500583 + (A)n Simple_repeat Simple_repeat 1 31 0 209 230 14 0 chr1 144163996 144164070 -98500283 + C-rich Low_complexity Low_complexity 3 77 0 2147 110 3 0 chr1 144164254 144164545 -98499808 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr1 144164615 144164643 -98499710 + AT_rich Low_complexity Low_complexity 1 28 0 1933 123 28 0 chr1 144164645 144164929 -98499424 + AluSx SINE Alu 1 292 -20 411 282 272 0 chr1 144164966 144165161 -98499192 - MIR SINE MIR -13 249 2 2090 100 34 0 chr1 144165235 144165526 -98498827 + AluSx SINE Alu 1 301 -11 524 300 28 0 chr1 144165755 144165935 -98498418 + L1MC4a LINE L1 5745 5929 -1879 2406 55 0 16 chr1 144166065 144166373 -98497980 + AluY SINE Alu 1 303 -8 1473 164 55 62 chr1 144166380 144166672 -98497681 + AluJo SINE Alu 1 290 -12 682 259 58 117 chr1 144166742 144166876 -98497477 - MLT1J LTR MaLR -173 338 198 1857 105 0 19 chr1 144166876 144167143 -98497210 - AluSx SINE Alu 0 312 51 682 259 58 117 chr1 144167143 144167367 -98496986 - MLT1J LTR MaLR -313 198 1 2196 110 0 3 chr1 144167369 144167670 -98496683 - AluSx SINE Alu -12 300 1 1184 160 35 94 chr1 144170596 144170720 -98493633 + AluJb SINE Alu 6 136 -176 193 71 0 48 chr1 144170720 144170762 -98493591 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2058 127 0 0 chr1 144170764 144171056 -98493297 - AluSg SINE Alu -18 292 1 2097 112 0 3 chr1 144171059 144171353 -98493000 - AluSc SINE Alu -16 293 1 315 0 0 0 chr1 144171353 144171388 -98492965 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 2110 104 0 17 chr1 144171389 144171687 -98492666 - AluSx SINE Alu -19 293 1 1184 160 35 94 chr1 144171687 144171840 -98492513 + AluJb SINE Alu 137 276 -36 577 204 115 0 chr1 144171871 144171984 -98492369 - FLAM_A SINE Alu -6 127 2 221 0 35 0 chr1 144171996 144172025 -98492328 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1765 148 0 4 chr1 144172029 144172293 -98492060 - AluSx SINE Alu -37 275 13 365 189 264 0 chr1 144174000 144174106 -98490247 + MIR SINE MIR 15 148 -114 2118 120 10 0 chr1 144174107 144174416 -98489937 + AluSx SINE Alu 1 312 0 338 356 68 64 chr1 144176547 144176873 -98487480 - L2 LINE L2 -51 3221 2895 425 223 125 9 chr1 144177022 144177134 -98487219 + L2 LINE L2 3189 3313 0 640 283 34 30 chr1 144177480 144177713 -98486640 + MIR SINE MIR 23 256 -6 423 264 38 31 chr1 144178545 144178704 -98485649 + MER5A DNA MER1_type 8 167 -22 2194 110 10 0 chr1 144178809 144179117 -98485236 - AluY SINE Alu 0 311 1 307 148 0 0 chr1 144179172 144179227 -98485126 + AluSq SINE Alu 120 170 -133 807 112 0 0 chr1 144179463 144179570 -98484783 + FLAM_C SINE Alu 11 117 -26 27 49 0 0 chr1 144179575 144179616 -98484737 + AT_rich Low_complexity Low_complexity 1 41 0 207 0 0 0 chr1 144179622 144179645 -98484708 + (TA)n Simple_repeat Simple_repeat 2 24 0 2224 93 6 6 chr1 144179645 144179956 -98484397 - AluSx SINE Alu 0 312 2 1002 138 0 80 chr1 144180282 144180340 -98484013 + L1MA4 LINE L1 5994 6055 -245 2102 108 3 0 chr1 144180340 144180627 -98483726 + AluSx SINE Alu 1 288 -24 1002 138 0 80 chr1 144180627 144180770 -98483583 + L1MA4 LINE L1 6055 6178 -122 1763 133 42 3 chr1 144180770 144181055 -98483298 + AluJb SINE Alu 1 296 -16 1002 138 0 80 chr1 144181055 144181076 -98483277 + L1MA4 LINE L1 6178 6199 -101 2211 104 7 3 chr1 144181725 144182034 -98482319 - AluSg SINE Alu 0 310 1 208 298 170 0 chr1 144182279 144182373 -98481980 - L2 LINE L2 -10 3262 3153 284 275 64 28 chr1 144183774 144183883 -98480470 - L2 LINE L2 -4 3309 3197 1090 176 40 111 chr1 144183887 144184211 -98480142 + AluSq SINE Alu 1 301 -2 825 130 8 0 chr1 144184697 144184820 -98479533 + FRAM SINE Alu 51 174 -2 1744 172 0 11 chr1 144184824 144185109 -98479244 + AluJb SINE Alu 1 282 -30 2224 93 0 0 chr1 144185109 144185400 -98478953 + AluSg SINE Alu 1 291 -19 295 169 34 0 chr1 144186483 144186542 -98477811 - Alu SINE Alu -4 296 236 1276 101 0 0 chr1 144186618 144186787 -98477566 + AluY SINE Alu 1 169 -142 479 130 0 0 chr1 144186787 144186856 -98477497 + AluSc SINE Alu 231 299 -10 2512 51 0 13 chr1 144186861 144187174 -98477179 - AluY SINE Alu -2 309 1 2053 119 3 13 chr1 144187199 144187501 -98476852 - AluSx SINE Alu -13 299 1 2314 112 0 0 chr1 144187503 144187815 -98476538 - AluSx SINE Alu 0 312 1 2011 22 0 342 chr1 144188575 144188793 -98475560 - MER47A DNA MER2_type -1957 366 248 2161 113 0 16 chr1 144188793 144188967 -98475386 - AluSx SINE Alu -6 306 138 2146 110 10 3 chr1 144188967 144189275 -98475078 - AluSg SINE Alu 0 310 1 2161 113 0 16 chr1 144189275 144189411 -98474942 - AluSx SINE Alu -174 138 1 2011 22 0 342 chr1 144189411 144189595 -98474758 - MER47A DNA MER2_type -2075 248 1 1848 153 10 0 chr1 144190387 144190681 -98473672 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr1 144190681 144190702 -98473651 + AT_rich Low_complexity Low_complexity 1 21 0 355 223 138 31 chr1 144190720 144190850 -98473503 - L1MCa LINE L1 -4361 2065 1922 347 253 46 11 chr1 144190805 144190892 -98473461 + L1MC4 LINE L1 6612 6701 -1341 * 215 317 24 37 chr1 144190911 144190993 -98473360 + MIR3 SINE MIR 98 178 -30 363 266 115 0 chr1 144191159 144191272 -98473081 - MIR3 SINE MIR -15 193 68 265 299 181 8 chr1 144191326 144191453 -98472900 - MIR3 SINE MIR -49 159 11 2264 100 0 0 chr1 144191808 144192118 -98472235 - AluSx SINE Alu -2 310 1 210 240 0 0 chr1 144193335 144193385 -98470968 + L2 LINE L2 3264 3313 0 1699 162 21 3 chr1 144194203 144194493 -98469860 + AluJb SINE Alu 1 295 -17 2281 91 0 3 chr1 144194503 144194800 -98469553 + AluSq SINE Alu 1 296 -17 322 301 72 0 chr1 144194800 144194883 -98469470 - L1MC4 LINE L1 -1340 6702 6614 333 47 0 0 chr1 144194883 144194926 -98469427 + (CA)n Simple_repeat Simple_repeat 2 44 0 947 161 122 0 chr1 144194959 144195202 -98469151 - MER58B DNA MER1_type -41 300 1 2204 100 3 10 chr1 144195495 144195673 -98468680 - AluSc SINE Alu 0 309 132 2292 88 0 13 chr1 144195673 144195978 -98468375 - AluSx SINE Alu -11 301 1 2204 100 3 10 chr1 144195978 144196110 -98468243 - AluSc SINE Alu -177 132 1 189 107 0 0 chr1 144196167 144196195 -98468158 + (TAA)n Simple_repeat Simple_repeat 2 29 0 199 260 30 100 chr1 144196195 144196295 -98468058 - MIR SINE MIR -14 248 156 1759 150 3 23 chr1 144196295 144196595 -98467758 + AluJb SINE Alu 4 297 -15 2168 82 3 0 chr1 144196597 144196906 -98467447 + AluSx SINE Alu 1 310 0 2189 91 10 0 chr1 144196933 144197229 -98467124 - AluSp SINE Alu -14 299 1 1204 90 0 0 chr1 144197293 144197449 -98466904 + AluSg/x SINE Alu 137 292 -20 812 175 0 0 chr1 144197449 144197575 -98466778 - AluJo/FLAM SINE Alu -174 128 3 2191 102 7 7 chr1 144197585 144197890 -98466463 - AluSq SINE Alu -8 305 1 828 169 32 0 chr1 144197911 144198065 -98466288 + FRAM SINE Alu 4 162 -14 2185 116 3 0 chr1 144198109 144198420 -98465933 + AluSx SINE Alu 1 312 0 1483 164 74 40 chr1 144199457 144199587 -98464766 + AluJb SINE Alu 1 125 -187 2191 85 4 0 chr1 144199587 144199892 -98464461 + AluSq SINE Alu 1 306 0 1483 164 74 40 chr1 144199892 144200059 -98464294 + AluJb SINE Alu 125 309 -3 2313 90 0 0 chr1 144200689 144200988 -98463365 - AluSg SINE Alu -11 299 1 1991 125 3 13 chr1 144201620 144201925 -98462428 + AluSp SINE Alu 2 303 -10 1204 144 0 0 chr1 144201998 144202178 -98462175 - AluSq SINE Alu 0 313 134 2173 82 27 3 chr1 144202178 144202471 -98461882 - AluY SINE Alu -11 300 1 188 275 77 55 chr1 144202477 144202568 -98461785 + L2 LINE L2 2943 3035 -237 2280 77 0 40 chr1 144202605 144202929 -98461424 + AluY SINE Alu 1 311 0 2077 92 14 0 chr1 144202932 144203237 -98461116 + AluSq SINE Alu 1 309 0 1774 118 41 4 chr1 144203239 144203510 -98460843 - AluJo SINE Alu -31 281 1 180 97 0 0 chr1 144203645 144203676 -98460677 + (CA)n Simple_repeat Simple_repeat 1 31 0 309 298 36 12 chr1 144203793 144203877 -98460476 + MIR SINE MIR 19 104 -104 406 210 0 50 chr1 144204697 144204797 -98459556 - MIR3 SINE MIR -3 205 111 217 185 19 74 chr1 144206121 144206229 -98458124 + (TCTCTG)n Simple_repeat Simple_repeat 6 107 0 978 120 0 0 chr1 144206337 144206509 -98457844 - AluSg/x SINE Alu 0 311 140 3624 80 2 2 chr1 144206509 144206995 -98457358 - MER11C LTR ERVK 0 1071 586 2163 106 0 26 chr1 144208483 144208794 -98455559 + AluSx SINE Alu 1 303 -9 387 0 0 0 chr1 144209127 144209170 -98455183 + (CA)n Simple_repeat Simple_repeat 1 43 0 2095 92 0 7 chr1 144210333 144210639 -98453714 + AluSx SINE Alu 1 304 0 295 193 0 0 chr1 144210682 144210739 -98453614 - MIR SINE MIR -118 144 88 340 314 102 0 chr1 144213284 144213421 -98450932 + MIR SINE MIR 56 206 -56 1372 132 134 48 chr1 144214508 144214555 -98449798 - Charlie1b DNA MER1_type -2373 388 346 2070 121 3 0 chr1 144214555 144214845 -98449508 + AluSq SINE Alu 5 295 -18 1372 132 134 48 chr1 144214845 144215154 -98449199 - Charlie1b DNA MER1_type -2415 346 1 246 160 93 40 chr1 144215155 144215230 -98449123 + MIR SINE MIR 183 261 -1 203 244 219 0 chr1 144216032 144216114 -98448239 - L2 LINE L2 -3 3310 3211 318 132 53 40 chr1 144217062 144217138 -98447215 - MER91C DNA MER1_type 0 140 64 237 225 20 0 chr1 144217208 144217275 -98447078 + MIR SINE MIR 91 160 -48 993 183 72 30 chr1 144217989 144218224 -98446129 + MIR SINE MIR 14 258 -4 318 236 87 56 chr1 144219289 144219417 -98444936 + MIR SINE MIR 35 163 -66 * 735 264 16 74 chr1 144219408 144219650 -98444703 - MIR SINE MIR -22 240 13 1134 34 0 47 chr1 144219945 144220093 -98444260 + AluY SINE Alu 1 141 -170 205 289 13 26 chr1 144220370 144220446 -98443907 + MER5B DNA MER1_type 2 76 -102 2218 103 0 6 chr1 144220491 144220802 -98443551 - AluSx SINE Alu -3 309 1 2484 55 0 0 chr1 144220951 144221258 -98443095 - AluY SINE Alu -4 307 1 2194 101 3 0 chr1 144221372 144221668 -98442685 + AluSp SINE Alu 9 305 -8 731 142 17 0 chr1 144221672 144221792 -98442561 + FLAM_C SINE Alu 1 122 -11 1983 104 66 0 chr1 144221822 144222109 -98442244 + AluSx SINE Alu 1 306 -6 1330 142 68 88 chr1 144222113 144222228 -98442125 + AluJo SINE Alu 7 123 -189 2013 123 10 0 chr1 144222228 144222530 -98441823 - AluSx SINE Alu -1 311 7 1856 135 24 3 chr1 144222532 144222820 -98441533 - AluSx SINE Alu -18 294 1 1330 142 68 88 chr1 144222820 144222997 -98441356 + AluJo SINE Alu 124 296 -16 2443 65 0 3 chr1 144223290 144223600 -98440753 - AluY SINE Alu -2 309 1 467 143 0 0 chr1 144225749 144225826 -98438527 + AluSp/q SINE Alu 229 305 -8 1387 134 5 0 chr1 144225832 144226041 -98438312 + AluJo SINE Alu 87 296 -16 414 0 0 0 chr1 144226042 144226088 -98438265 + (TA)n Simple_repeat Simple_repeat 1 46 0 2241 93 3 6 chr1 144226318 144226629 -98437724 + AluSg SINE Alu 1 310 0 310 358 74 7 chr1 144226816 144226964 -98437389 + L1ME LINE L1 6 163 -5907 2195 111 0 9 chr1 144227037 144227353 -98437000 - AluSq SINE Alu 0 313 1 627 95 0 12 chr1 144227353 144227437 -98436916 - AluJb SINE Alu -166 146 64 221 0 35 0 chr1 144227511 144227540 -98436813 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 219 189 0 0 chr1 144227959 144228012 -98436341 + CT-rich Low_complexity Low_complexity 2 54 0 229 49 0 0 chr1 144228383 144228424 -98435929 - Alu SINE Alu -1 302 262 649 229 21 76 chr1 144228654 144228848 -98435505 - AluSg/x SINE Alu -2 310 130 1973 134 0 0 chr1 144228848 144229138 -98435215 + AluSq SINE Alu 6 295 -18 649 229 21 76 chr1 144229138 144229179 -98435174 - AluSg/x SINE Alu -182 130 88 680 306 62 0 chr1 144229188 144229430 -98434923 + L2 LINE L2 3052 3308 -5 2217 74 3 0 chr1 144229432 144229740 -98434613 - AluSp SINE Alu 0 309 1 570 266 70 19 chr1 144230426 144230640 -98433713 + MIR SINE MIR 27 251 -11 230 163 82 0 chr1 144230738 144230787 -98433566 + MIR3 SINE MIR 111 163 -45 195 162 0 0 chr1 144230792 144230829 -98433524 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 219 258 30 30 chr1 144230897 144230963 -98433390 + L2 LINE L2 3188 3253 -19 432 113 0 0 chr1 144231437 144231508 -98432845 - AluSp/q SINE Alu 0 313 243 1845 95 0 0 chr1 144231508 144231783 -98432570 + AluSg SINE Alu 42 316 0 1646 197 3 0 chr1 144231784 144232089 -98432264 + AluJb SINE Alu 1 306 -6 2044 131 0 13 chr1 144232109 144232423 -98431930 + AluSg SINE Alu 1 310 0 741 147 18 0 chr1 144232425 144232534 -98431819 - AluJo/FLAM SINE Alu -197 115 5 28 48 0 0 chr1 144232731 144232773 -98431580 + AT_rich Low_complexity Low_complexity 1 42 0 2354 78 3 0 chr1 144232892 144233199 -98431154 + AluSc SINE Alu 1 308 -1 1647 185 4 0 chr1 144233208 144233516 -98430837 + AluJo SINE Alu 1 309 0 2212 99 3 10 chr1 144233520 144233832 -98430521 + AluSg SINE Alu 1 310 0 2114 88 14 7 chr1 144234120 144234417 -98429936 + AluSx SINE Alu 1 299 -13 288 0 0 0 chr1 144235093 144235125 -98429228 + (GA)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr1 144235309 144235333 -98429020 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 187 239 22 0 chr1 144235395 144235441 -98428912 - L2 LINE L2 -12 3301 3255 1932 135 17 0 chr1 144235449 144235745 -98428608 - AluSx SINE Alu -11 301 1 258 247 104 0 chr1 144235755 144235832 -98428521 - MIR SINE MIR -110 152 68 264 258 70 94 chr1 144235893 144236021 -98428332 - L2 LINE L2 -7 3265 3141 355 330 115 21 chr1 144237329 144237520 -98426833 - L3b LINE CR1 -54 1529 1321 1961 85 89 20 chr1 144237705 144237998 -98426355 - AluSq SINE Alu 0 313 1 231 232 14 14 chr1 144238573 144238642 -98425711 + GA-rich Low_complexity Low_complexity 5 73 0 25 0 0 0 chr1 144238674 144238699 -98425654 + GC_rich Low_complexity Low_complexity 1 25 0 255 170 0 0 chr1 144238947 144238994 -98425359 + C-rich Low_complexity Low_complexity 3 49 0 240 35 0 0 chr1 144238999 144239028 -98425325 + (TC)n Simple_repeat Simple_repeat 1 29 0 264 231 16 16 chr1 144239247 144239368 -98424985 + (CCG)n Simple_repeat Simple_repeat 2 122 0 224 319 71 0 chr1 144241028 144241141 -98423212 - L3b LINE CR1 -200 1383 1263 2332 80 0 7 chr1 144241534 144241835 -98422518 + AluSx SINE Alu 5 303 -9 239 324 0 0 chr1 144242386 144242457 -98421896 + CT-rich Low_complexity Low_complexity 2 72 0 210 118 0 0 chr1 144244085 144244119 -98420234 + (TCC)n Simple_repeat Simple_repeat 1 34 0 208 268 16 68 chr1 144245146 144245300 -98419053 + CT-rich Low_complexity Low_complexity 4 237 0 22 35 0 0 chr1 144246613 144246642 -98417711 + AT_rich Low_complexity Low_complexity 1 29 0 182 36 0 36 chr1 144247032 144247060 -98417293 + (CCCCCT)n Simple_repeat Simple_repeat 6 32 0 33 43 0 0 chr1 144247336 144247383 -98416970 + AT_rich Low_complexity Low_complexity 1 47 0 2065 138 0 3 chr1 144249296 144249594 -98414759 + AluSx SINE Alu 1 297 -15 2008 104 22 4 chr1 144249753 144250031 -98414322 + AluSx SINE Alu 14 296 -16 190 250 36 0 chr1 144251143 144251199 -98413154 - MER5A DNA MER1_type -72 117 60 409 284 126 34 chr1 144251387 144251532 -98412821 - MIR SINE MIR 0 262 85 2344 88 7 0 chr1 144251532 144251840 -98412513 + AluSg SINE Alu 1 310 0 409 284 126 34 chr1 144251840 144251933 -98412420 - MIR SINE MIR -177 85 2 2207 125 0 0 chr1 144252022 144252334 -98412019 + AluSx SINE Alu 1 312 0 2191 102 0 0 chr1 144252958 144253243 -98411110 + AluSp SINE Alu 1 285 -28 211 281 34 45 chr1 144253539 144253628 -98410725 - MIR3 SINE MIR -21 187 100 2307 79 10 3 chr1 144253753 144254057 -98410296 - AluSg SINE Alu -4 306 1 1926 147 0 3 chr1 144254062 144254354 -98409999 - AluSx SINE Alu -21 291 1 224 384 9 0 chr1 144254581 144254693 -98409660 + MIR SINE MIR 147 259 -3 429 244 32 51 chr1 144255736 144255892 -98408461 + MIR SINE MIR 76 228 -34 433 313 0 0 chr1 144256146 144256261 -98408092 + MIR SINE MIR 27 141 -67 2019 147 13 0 chr1 144256296 144256603 -98407750 + AluJb SINE Alu 1 311 -1 942 193 12 0 chr1 144256603 144256769 -98407584 + AluJb SINE Alu 134 301 -11 303 93 0 0 chr1 144256848 144256891 -98407462 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 231 169 0 chr1 144257000 144257065 -98407288 + MIR SINE MIR 81 156 -106 586 245 61 12 chr1 144257079 144257242 -98407111 - MIR SINE MIR -16 246 76 582 256 68 30 chr1 144257249 144257560 -98406793 + LTR16A LTR ERVL 9 392 -58 2196 64 0 58 chr1 144257560 144257871 -98406482 + AluSc SINE Alu 1 293 -16 582 256 68 30 chr1 144257871 144257933 -98406420 + LTR16A LTR ERVL 392 450 0 2300 98 0 0 chr1 144257934 144258239 -98406114 - AluSx SINE Alu -7 305 1 251 164 295 0 chr1 144258254 144258315 -98406038 - MIR SINE MIR -182 80 2 217 154 0 0 chr1 144258366 144258405 -98405948 + MIR SINE MIR 218 256 -6 2219 98 10 0 chr1 144258931 144259226 -98405127 + AluSg SINE Alu 1 298 -12 2406 69 0 3 chr1 144260122 144260425 -98403928 + AluSp SINE Alu 1 302 -11 1085 124 31 0 chr1 144260425 144260586 -98403767 + AluSq SINE Alu 134 299 -14 745 56 0 0 chr1 144260586 144260676 -98403677 + AluY SINE Alu 1 90 -221 1622 61 0 0 chr1 144260753 144260949 -98403404 + AluY SINE Alu 97 292 -19 2284 94 3 3 chr1 144260951 144261258 -98403095 + AluSx SINE Alu 1 307 -5 813 243 83 5 chr1 144261361 144261579 -98402774 + MIR SINE MIR 28 262 0 839 213 0 0 chr1 144261641 144261801 -98402552 - AluJb SINE Alu -16 296 137 976 154 39 0 chr1 144262140 144262296 -98402057 + AluSg/x SINE Alu 133 294 -16 282 328 45 0 chr1 144262974 144263073 -98401280 + MIR SINE MIR 36 139 -69 399 215 177 11 chr1 144263236 144263422 -98400931 - MER112 DNA MER1_type -7 253 37 22 0 0 0 chr1 144263435 144263457 -98400896 + AT_rich Low_complexity Low_complexity 1 22 0 618 240 0 0 chr1 144263457 144263582 -98400771 - FLAM_C SINE Alu -18 125 1 2210 121 0 0 chr1 144263600 144263897 -98400456 - AluSx SINE Alu -15 297 1 903 107 0 138 chr1 144264657 144264882 -98399471 - Tigger5 DNA MER2_type 0 2323 2130 194 316 113 24 chr1 144264992 144265088 -98399265 + L2 LINE L2 3085 3171 -142 1611 135 8 4 chr1 144265088 144265333 -98399020 + AluJb SINE Alu 1 246 -66 194 316 113 24 chr1 144265333 144265404 -98398949 + L2 LINE L2 3171 3267 -46 233 183 17 33 chr1 144265458 144265518 -98398835 + MIR3 SINE MIR 100 158 -50 555 262 26 73 chr1 144265568 144265801 -98398552 - MIR SINE MIR -28 234 13 180 320 87 53 chr1 144266861 144267011 -98397342 - MIR SINE MIR -9 253 99 2492 74 0 0 chr1 144317905 144318202 -98346151 - AluY SINE Alu -13 298 2 2107 102 0 7 chr1 144318471 144318780 -98345573 - AluSq SINE Alu 0 307 1 198 0 0 0 chr1 144318996 144319018 -98345335 + (TG)n Simple_repeat Simple_repeat 1 22 0 2180 129 7 0 chr1 144319019 144319328 -98345025 - AluSx SINE Alu -1 311 1 2063 116 45 0 chr1 144320234 144320526 -98343827 + AluSx SINE Alu 1 305 -7 1771 146 7 27 chr1 144321388 144321523 -98342830 + AluJo SINE Alu 5 141 -171 2562 40 0 17 chr1 144321523 144321822 -98342531 + AluY SINE Alu 4 297 -14 1771 146 7 27 chr1 144321822 144321980 -98342373 + AluJo SINE Alu 141 292 -20 2313 112 0 0 chr1 144321980 144322283 -98342070 + AluSx SINE Alu 3 305 -7 1819 93 19 19 chr1 144322364 144322623 -98341730 + AluY SINE Alu 21 279 -32 1661 62 0 0 chr1 144322625 144322817 -98341536 - AluY SINE Alu -119 192 1 882 219 58 31 chr1 144323305 144323529 -98340824 - MLT1C LTR MaLR -4 463 234 2503 11 50 0 chr1 144323650 144323929 -98340424 - AluYa5 SINE Alu -18 293 1 2146 118 7 3 chr1 144324408 144324704 -98339649 + AluSg SINE Alu 1 297 -13 602 77 0 0 chr1 144324707 144324785 -98339568 + AluSg/x SINE Alu 217 294 -15 914 181 76 29 chr1 144325716 144325926 -98338427 - MER58A DNA MER1_type -4 220 1 1360 180 60 0 chr1 144326049 144326299 -98338054 + AluJo SINE Alu 26 290 -22 2395 68 3 3 chr1 144326404 144326696 -98337657 - AluY SINE Alu -19 292 1 2295 84 0 3 chr1 144326994 144327325 -98337028 - AluY SINE Alu 0 330 1 890 101 7 94 chr1 144327325 144327474 -98336879 - AluSq/x SINE Alu -177 136 1 25 0 0 0 chr1 144327474 144327499 -98336854 + AT_rich Low_complexity Low_complexity 1 25 0 2088 104 38 7 chr1 144327591 144327880 -98336473 + AluSq SINE Alu 8 305 -8 1337 130 0 25 chr1 144328142 144328279 -98336074 + AluSx SINE Alu 1 133 -179 2226 125 0 0 chr1 144328279 144328582 -98335771 + AluSg SINE Alu 1 303 -7 1337 130 0 25 chr1 144328582 144328644 -98335709 + AluSx SINE Alu 133 195 -117 2099 108 28 7 chr1 144328744 144329031 -98335322 + AluSq SINE Alu 12 304 -9 285 301 77 6 chr1 144329039 144329195 -98335158 + MIR SINE MIR 34 200 -62 1524 166 108 7 chr1 144329227 144329523 -98334830 + MER7A DNA MER2_type 1 324 -22 1027 140 26 28 chr1 144329528 144329770 -98334583 + AluSg SINE Alu 7 302 -10 252 0 0 0 chr1 144330388 144330416 -98333937 + (CCCCAG)n Simple_repeat Simple_repeat 1 28 0 2185 103 4 0 chr1 144332195 144332501 -98331852 + AluSx SINE Alu 1 307 0 2167 134 0 3 chr1 144332581 144332888 -98331465 + AluSg SINE Alu 1 306 -4 243 203 0 0 chr1 144333410 144333469 -98330884 + T-rich Low_complexity Low_complexity 1 59 0 1976 129 21 3 chr1 144335269 144335555 -98328798 - AluSx SINE Alu -21 291 1 1995 94 10 28 chr1 144335568 144335856 -98328497 - AluSc SINE Alu -26 283 1 2343 109 0 0 chr1 144338061 144338364 -98325989 - AluSx SINE Alu -9 303 1 2393 78 3 10 chr1 144338601 144338909 -98325444 - AluY SINE Alu -5 306 1 2301 103 0 0 chr1 144339141 144339441 -98324912 + AluSq SINE Alu 1 300 -13 2443 80 0 0 chr1 144339530 144339830 -98324523 - AluY SINE Alu -11 300 1 2371 79 7 7 chr1 144339891 144340195 -98324158 - AluY SINE Alu -7 304 1 310 274 62 53 chr1 144340260 144340373 -98323980 - L2 LINE L2 -11 3302 3189 1926 105 29 79 chr1 144340448 144340763 -98323590 + AluSx SINE Alu 1 299 -13 1682 164 0 14 chr1 144340872 144341177 -98323176 - AluJo SINE Alu 0 306 6 2411 99 3 6 chr1 144341212 144341526 -98322827 - AluSq SINE Alu 0 313 1 276 172 103 78 chr1 144341526 144341642 -98322711 + MER112 DNA MER1_type 141 259 -1 300 262 87 16 chr1 144341685 144341811 -98322542 + L1ME4a LINE L1 5964 6098 -23 2246 118 0 3 chr1 144341876 144342173 -98322180 + AluSx SINE Alu 1 296 -16 436 329 64 4 chr1 144342218 144342452 -98321901 + MIR SINE MIR 3 250 -12 716 168 0 84 chr1 144342475 144342505 -98321848 - FLAM_A SINE Alu -170 132 101 1859 167 7 10 chr1 144342505 144342804 -98321549 + AluJb SINE Alu 1 298 -14 716 168 0 84 chr1 144342804 144342916 -98321437 - FLAM_A SINE Alu -201 101 2 1178 169 40 22 chr1 144343810 144344035 -98320318 + AluJb SINE Alu 1 229 -83 1475 167 0 4 chr1 144344044 144344278 -98320075 - AluJb SINE Alu -79 233 1 340 227 155 0 chr1 144344347 144344444 -98319909 + L1ME LINE L1 5680 5791 -330 2463 76 0 16 chr1 144344522 144344701 -98319652 - AluSg SINE Alu 0 310 137 2425 56 7 0 chr1 144344701 144344989 -98319364 - AluY SINE Alu -21 290 1 2463 76 0 16 chr1 144344989 144345124 -98319229 - AluSg SINE Alu -173 137 1 2203 111 3 19 chr1 144345128 144345444 -98318909 - AluSx SINE Alu 0 312 2 1307 118 0 0 chr1 144345445 144345623 -98318730 - AluSq SINE Alu -7 306 129 963 73 0 32 chr1 144346047 144346171 -98318182 - AluSq SINE Alu -188 124 5 1798 180 0 33 chr1 144346174 144346336 -98318017 - AluJb SINE Alu -17 295 146 2057 110 13 45 chr1 144346336 144346645 -98317708 - AluSx SINE Alu -13 299 1 1798 180 0 33 chr1 144346645 144346787 -98317566 - AluJb SINE Alu -166 146 1 2185 107 14 0 chr1 144346890 144347179 -98317174 + AluSp SINE Alu 1 293 -20 252 0 0 0 chr1 144349460 144349488 -98314865 + (TA)n Simple_repeat Simple_repeat 2 29 0 752 99 124 25 chr1 144349495 144349616 -98314737 - FLAM_C SINE Alu 0 133 1 2555 66 0 3 chr1 144350514 144350816 -98313537 - AluY SINE Alu -10 301 1 2009 134 7 3 chr1 144350917 144351201 -98313152 - AluSx SINE Alu -18 294 10 1356 161 96 20 chr1 144351234 144351483 -98312870 - AluJo SINE Alu -44 268 1 926 166 7 78 chr1 144351541 144351836 -98312517 - AluSx SINE Alu -37 275 2 207 189 0 0 chr1 144351911 144351948 -98312405 + T-rich Low_complexity Low_complexity 4 40 0 2327 93 0 20 chr1 144351969 144352269 -98312084 + AluSg1 SINE Alu 1 294 -15 1746 155 10 34 chr1 144352441 144352738 -98311615 + AluSx SINE Alu 6 295 -17 227 197 30 15 chr1 144352739 144352805 -98311548 + (TA)n Simple_repeat Simple_repeat 2 68 0 2399 74 3 3 chr1 144352843 144353140 -98311213 + AluY SINE Alu 1 297 -14 2309 96 10 0 chr1 144353311 144353604 -98310749 + AluSx SINE Alu 2 297 -15 629 101 321 0 chr1 144353636 144353745 -98310608 - U4 snRNA snRNA -1 144 1 2186 115 3 10 chr1 144353768 144354073 -98310280 + AluSg SINE Alu 2 304 -6 222 313 12 60 chr1 144354774 144354857 -98309496 - L2 LINE L2 -20 3252 3174 1671 184 3 3 chr1 144355071 144355353 -98309000 + AluJo SINE Alu 3 284 -28 368 97 16 0 chr1 144355353 144355415 -98308938 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 1231 148 88 98 chr1 144355422 144355727 -98308626 + AluJo SINE Alu 1 302 0 2292 107 0 0 chr1 144355791 144356082 -98308271 + AluSx SINE Alu 3 293 -19 2442 81 3 0 chr1 144356521 144356819 -98307534 - AluSg SINE Alu -11 299 1 192 40 0 0 chr1 144356965 144356990 -98307363 + (CA)n Simple_repeat Simple_repeat 2 26 0 282 71 0 24 chr1 144357351 144357393 -98306960 - AluSp/q SINE Alu -13 290 250 2171 110 7 29 chr1 144357450 144357759 -98306594 + AluSx SINE Alu 1 302 -10 1246 170 0 15 chr1 144357772 144357978 -98306375 + AluJo SINE Alu 89 291 -21 207 88 0 0 chr1 144357989 144358023 -98306330 + (TA)n Simple_repeat Simple_repeat 1 34 0 2219 89 0 42 chr1 144358298 144358611 -98305742 - AluY SINE Alu -8 303 4 2166 124 3 3 chr1 144359047 144359346 -98305007 + AluSx SINE Alu 2 300 -12 204 331 66 25 chr1 144359437 144359558 -98304795 + MER5A DNA MER1_type 21 146 -43 2268 85 7 0 chr1 144359812 144360123 -98304230 + AluSp SINE Alu 1 313 0 2201 100 10 0 chr1 144360169 144360458 -98303895 + AluSq SINE Alu 1 292 -21 2239 110 10 0 chr1 144360465 144360765 -98303588 + AluSg SINE Alu 1 303 -7 201 343 0 0 chr1 144360819 144360889 -98303464 + MIR SINE MIR 49 118 -90 617 77 0 0 chr1 144360929 144361007 -98303346 + LTR12 LTR ERV1 286 363 -351 195 42 0 0 chr1 144361007 144361031 -98303322 + (A)n Simple_repeat Simple_repeat 1 24 0 720 161 0 51 chr1 144361468 144361494 -98302859 - FLAM_C SINE Alu -170 132 106 2257 110 0 0 chr1 144361494 144361793 -98302560 + AluSx SINE Alu 2 300 -12 720 161 0 51 chr1 144361793 144361903 -98302450 - FLAM_C SINE Alu -196 106 3 1987 141 0 0 chr1 144362565 144362848 -98301505 + AluJo SINE Alu 1 283 -29 181 271 43 43 chr1 144362943 144363013 -98301340 + L2 LINE L2 3238 3307 -6 2424 92 0 0 chr1 144363129 144363434 -98300919 - AluSc SINE Alu -4 305 1 1496 162 50 43 chr1 144363992 144364295 -98300058 + AluJo SINE Alu 1 305 -7 1820 171 13 0 chr1 144364396 144364694 -98299659 + AluJb SINE Alu 3 304 -8 1982 157 17 0 chr1 144365240 144365584 -98298769 - L1MB7 LINE L1 -8 6176 5827 2030 133 7 0 chr1 144365584 144365878 -98298475 - AluSq SINE Alu -15 298 3 1500 137 6 108 chr1 144365880 144366046 -98298307 - AluJo SINE Alu -13 299 178 1903 133 40 0 chr1 144366046 144366324 -98298029 - AluSx SINE Alu -14 298 10 1500 137 6 108 chr1 144366324 144366471 -98297882 - AluJo SINE Alu -134 178 18 550 226 38 0 chr1 144366471 144366577 -98297776 + FRAM SINE Alu 11 120 -56 588 161 25 0 chr1 144366594 144366712 -98297641 - L1MB7 LINE L1 -361 5823 5703 1438 213 38 0 chr1 144366712 144366999 -98297354 + AluJo SINE Alu 1 298 -14 1361 203 10 41 chr1 144367002 144367297 -98297056 + AluJo SINE Alu 1 286 -16 2379 85 10 0 chr1 144367317 144367622 -98296731 + AluY SINE Alu 1 308 -3 794 205 24 0 chr1 144367622 144367788 -98296565 - L1MB7 LINE L1 -1416 4730 4561 531 301 94 16 chr1 144367788 144367917 -98296436 + L2 LINE L2 2600 2718 -595 2148 122 6 6 chr1 144367917 144368228 -98296125 - AluSx SINE Alu 0 312 2 531 301 94 16 chr1 144368228 144368512 -98295841 + L2 LINE L2 2718 3046 -267 1476 175 79 11 chr1 144368512 144368792 -98295561 - AluJo SINE Alu -3 309 11 1324 217 7 18 chr1 144368805 144369082 -98295271 - AluJo SINE Alu -16 296 23 357 273 139 21 chr1 144369083 144369277 -98295076 + L2 LINE L2 3037 3253 -60 354 195 35 0 chr1 144369408 144369664 -98294689 + (TA)n Simple_repeat Simple_repeat 1 264 0 45 34 0 0 chr1 144369664 144369723 -98294630 + AT_rich Low_complexity Low_complexity 1 59 0 485 148 34 11 chr1 144369723 144369899 -98294454 + (TA)n Simple_repeat Simple_repeat 1 180 0 1928 134 11 0 chr1 144369899 144370183 -98294170 - AluSx SINE Alu -25 287 1 29 78 0 0 chr1 144370183 144370247 -98294106 + AT_rich Low_complexity Low_complexity 1 64 0 1588 90 9 5 chr1 144370315 144370526 -98293827 + AluY SINE Alu 1 212 -99 22 0 0 0 chr1 144370631 144370653 -98293700 + AT_rich Low_complexity Low_complexity 1 22 0 1230 157 13 67 chr1 144370663 144370976 -98293377 + AluSx SINE Alu 1 296 -16 2604 206 55 61 chr1 144370986 144371054 -98293299 + L1MC4 LINE L1 7147 7214 -828 2506 74 3 3 chr1 144371054 144371365 -98292988 + AluY SINE Alu 1 311 0 2604 206 55 61 chr1 144371365 144371418 -98292935 + L1MC4 LINE L1 7214 7266 -776 2273 107 7 3 chr1 144371418 144371728 -98292625 + AluSx SINE Alu 1 311 -1 1861 135 45 3 chr1 144371728 144372017 -98292336 + AluSg SINE Alu 1 301 -9 2604 206 55 61 chr1 144372017 144372505 -98291848 + L1MC4 LINE L1 7265 7754 -288 2288 104 0 3 chr1 144372505 144372803 -98291550 - AluSx SINE Alu -15 297 1 2604 206 55 61 chr1 144372803 144373022 -98291331 + L1MC4 LINE L1 7754 7973 -69 1734 185 10 10 chr1 144373096 144373404 -98290949 + AluJb SINE Alu 1 308 -4 195 266 0 0 chr1 144373775 144373839 -98290514 + GA-rich Low_complexity Low_complexity 3 66 0 1589 91 0 0 chr1 144374495 144374717 -98289636 + AluSg/x SINE Alu 86 307 0 1930 105 39 18 chr1 144374773 144375059 -98289294 + AluSx SINE Alu 1 292 -20 447 243 42 154 chr1 144375181 144375589 -98288764 + L1ME3A LINE L1 5799 6160 -10 198 0 0 0 chr1 144376720 144376742 -98287611 + (A)n Simple_repeat Simple_repeat 1 22 0 287 241 215 6 chr1 144376754 144376912 -98287441 + L1MC4 LINE L1 7841 8031 -11 1795 181 7 13 chr1 144376931 144377240 -98287113 - AluJo SINE Alu -5 307 1 1562 189 13 44 chr1 144377578 144377896 -98286457 + AluJo SINE Alu 1 308 -4 2069 112 35 0 chr1 144378071 144378358 -98285995 - AluSx SINE Alu -15 297 1 304 258 119 60 chr1 144378515 144378666 -98285687 + L3 LINE CR1 952 1111 -466 2009 118 17 0 chr1 144378667 144378954 -98285399 + AluSx SINE Alu 1 292 -20 1948 123 13 43 chr1 144378954 144379255 -98285098 + AluSx SINE Alu 1 292 -20 232 291 68 73 chr1 144379260 144379363 -98284990 + L3 LINE CR1 1190 1292 -285 797 144 0 43 chr1 144379363 144379502 -98284851 - FLAM_C SINE Alu 0 133 1 232 291 68 73 chr1 144379502 144379604 -98284749 + L3 LINE CR1 1292 1394 -183 308 231 19 153 chr1 144379734 144379856 -98284497 - MER5A DNA MER1_type -1 188 106 2256 115 10 0 chr1 144379856 144380160 -98284193 - AluSx SINE Alu -5 307 1 308 231 19 153 chr1 144380160 144380253 -98284100 - MER5A DNA MER1_type -83 106 2 1427 53 11 21 chr1 144380577 144380764 -98283589 + AluSq SINE Alu 112 296 -17 183 314 100 0 chr1 144380881 144380951 -98283402 + L2 LINE L2 98 174 -3140 382 208 69 170 chr1 144380979 144381134 -98283219 + L2 LINE L2 3025 3133 -180 280 0 24 24 chr1 144381134 144381175 -98283178 + (TA)n Simple_repeat Simple_repeat 2 42 0 382 208 69 170 chr1 144381175 144381337 -98283016 + L2 LINE L2 3133 3310 -3 1690 152 9 41 chr1 144382351 144382666 -98281687 - AluJo SINE Alu -7 305 1 2240 101 3 0 chr1 144382673 144382970 -98281383 - AluSx SINE Alu -14 298 1 2079 100 0 35 chr1 144383934 144384253 -98280100 + AluSg SINE Alu 3 310 0 186 103 0 0 chr1 144384625 144384654 -98279699 + (TTC)n Simple_repeat Simple_repeat 3 31 0 2232 141 0 0 chr1 144384908 144385220 -98279133 + AluSx SINE Alu 1 312 0 262 215 0 0 chr1 144385322 144385387 -98278966 + A-rich Low_complexity Low_complexity 1 65 0 1937 109 4 4 chr1 144385473 144385729 -98278624 - AluSp SINE Alu -55 258 3 2173 135 0 3 chr1 144385740 144386051 -98278302 - AluSg SINE Alu 0 310 1 1947 135 26 3 chr1 144388076 144388380 -98275973 + AluSx SINE Alu 1 311 -1 261 0 0 0 chr1 144388947 144388976 -98275377 + (CA)n Simple_repeat Simple_repeat 2 30 0 1885 120 23 27 chr1 144389339 144389640 -98274713 + AluSx SINE Alu 1 300 -12 2291 77 3 3 chr1 144389642 144389940 -98274413 + AluY SINE Alu 1 298 -13 762 118 9 0 chr1 144389942 144390052 -98274301 - AluJo/FLAM SINE Alu -196 116 6 364 291 24 31 chr1 144390078 144390205 -98274148 - HAL1 LINE L1 -1040 1467 1342 1706 161 6 6 chr1 144390277 144390588 -98273765 - AluSx SINE Alu -1 311 1 31 26 0 0 chr1 144390590 144390628 -98273725 + AT_rich Low_complexity Low_complexity 1 38 0 1323 273 46 54 chr1 144390628 144391259 -98273094 + HAL1 LINE L1 1693 2318 -189 1056 194 3 82 chr1 144391261 144391554 -98272799 + AluJo SINE Alu 43 312 0 1360 212 10 27 chr1 144391555 144391848 -98272505 + AluJo SINE Alu 1 288 -14 1851 137 0 48 chr1 144391881 144392195 -98272158 + AluSx SINE Alu 3 301 -11 202 352 11 11 chr1 144392202 144392290 -98272063 - L2 LINE L2 -1700 1614 1527 827 186 0 0 chr1 144392622 144392767 -98271586 - AluJb SINE Alu -20 292 148 1488 188 0 23 chr1 144392788 144393091 -98271262 - AluJo SINE Alu -16 296 1 1935 109 39 0 chr1 144393194 144393477 -98270876 + AluSq SINE Alu 1 294 -19 1330 181 53 23 chr1 144393787 144394086 -98270267 + AluJo SINE Alu 5 312 0 460 141 0 0 chr1 144394090 144394154 -98270199 - AluJ/FLAM SINE Alu -246 66 3 181 358 74 20 chr1 144394849 144394997 -98269356 - L3b LINE CR1 -316 1267 1112 2146 90 0 3 chr1 144395620 144395919 -98268434 - AluSc SINE Alu -11 298 1 1937 135 0 13 chr1 144396768 144397071 -98267282 - AluSx SINE Alu -13 299 1 1629 184 10 0 chr1 144397089 144397394 -98266959 - AluJb SINE Alu -4 308 1 1703 171 0 10 chr1 144397862 144398166 -98266187 - AluJo SINE Alu -11 301 1 352 283 43 51 chr1 144398289 144398427 -98265926 + L3b LINE CR1 1314 1450 -133 2157 93 0 0 chr1 144398611 144398902 -98265451 + AluSg SINE Alu 1 291 -19 2101 104 0 0 chr1 144399576 144399863 -98264490 - AluY SINE Alu -24 287 1 2390 115 45 0 chr1 144399868 144400242 -98264111 - L1PA10 LINE L1 -8 6160 5770 2176 67 42 0 chr1 144400297 144400582 -98263771 + AluY SINE Alu 1 297 -14 2180 96 10 0 chr1 144400753 144401046 -98263307 + AluSx SINE Alu 2 297 -15 625 101 321 0 chr1 144401078 144401187 -98263166 - U4 snRNA snRNA -1 144 1 1969 128 3 0 chr1 144401210 144401498 -98262855 + AluSg SINE Alu 2 290 -20 1827 123 13 43 chr1 144401498 144401799 -98262554 + AluSx SINE Alu 1 292 -20 303 291 108 67 chr1 144401804 144401907 -98262446 + L3 LINE CR1 1190 1287 -290 802 144 0 43 chr1 144401907 144402046 -98262307 - FLAM_C SINE Alu 0 133 1 303 291 108 67 chr1 144402046 144402165 -98262188 + L3 LINE CR1 1287 1421 -156 390 230 18 152 chr1 144402277 144402400 -98261953 - MER5A DNA MER1_type 0 189 106 2130 115 10 0 chr1 144402400 144402704 -98261649 - AluSx SINE Alu -5 307 1 390 230 18 152 chr1 144402704 144402797 -98261556 - MER5A DNA MER1_type -83 106 2 1149 149 138 45 chr1 144403200 144403469 -98260884 + AluJo SINE Alu 11 304 -8 2347 72 0 0 chr1 144403475 144403818 -98260535 + AluY SINE Alu 1 311 0 780 216 82 49 chr1 144405034 144405279 -98259074 + L1ME1 LINE L1 5837 6089 -77 2303 72 3 7 chr1 144405279 144405585 -98258768 - AluSp SINE Alu -8 305 1 942 114 0 0 chr1 144405587 144405719 -98258634 - AluSp SINE Alu -181 132 1 500 253 82 34 chr1 144405770 144406063 -98258290 + L1ME3A LINE L1 3842 4148 -1998 1880 140 7 0 chr1 144406103 144406396 -98257957 + AluSx SINE Alu 1 295 -17 486 235 125 7 chr1 144406496 144406632 -98257721 + L1ME3A LINE L1 5615 5766 -404 2023 118 3 37 chr1 144406632 144406953 -98257400 + AluSx SINE Alu 1 310 -2 2150 94 0 31 chr1 144406953 144407271 -98257082 + AluSg SINE Alu 1 308 -2 1298 176 19 57 chr1 144407361 144407679 -98256674 + AluJo SINE Alu 3 308 -4 1128 202 35 76 chr1 144407690 144407781 -98256572 + L1ME3A LINE L1 5784 5877 -293 2164 93 3 0 chr1 144407781 144408082 -98256271 + AluSx SINE Alu 1 302 -10 1128 202 35 76 chr1 144408082 144408107 -98256246 + L1ME3A LINE L1 5877 5901 -269 1546 154 20 59 chr1 144408107 144408252 -98256101 + AluJb SINE Alu 2 130 -182 2094 99 7 10 chr1 144408252 144408554 -98255799 + AluSq SINE Alu 1 301 -12 1546 154 20 59 chr1 144408554 144408713 -98255640 + AluJb SINE Alu 130 294 -18 1128 202 35 76 chr1 144408713 144408773 -98255580 + L1ME3A LINE L1 5901 5962 -208 2196 106 0 3 chr1 144408773 144409076 -98255277 + AluSq SINE Alu 1 302 -11 1128 202 35 76 chr1 144409076 144409293 -98255060 + L1ME3A LINE L1 5962 6163 -7 296 282 14 0 chr1 144409676 144409747 -98254606 + MIR3 SINE MIR 122 193 -15 722 239 0 6 chr1 144410033 144410196 -98254157 + FRAM SINE Alu 5 166 0 831 156 0 0 chr1 144410219 144410347 -98254006 + FLAM_C SINE Alu 11 138 -5 1473 164 0 48 chr1 144410350 144410643 -98253710 + AluJo SINE Alu 1 279 -33 213 39 0 0 chr1 144410643 144410669 -98253684 + (CA)n Simple_repeat Simple_repeat 1 26 0 1922 119 3 22 chr1 144410697 144411015 -98253338 + AluSq SINE Alu 1 312 -1 2231 99 0 3 chr1 144411016 144411319 -98253034 + AluSx SINE Alu 2 303 -9 333 189 0 0 chr1 144411561 144411614 -98252739 - AluJ/FRAM SINE Alu -26 276 224 1563 153 22 53 chr1 144411814 144412134 -98252219 + AluSx SINE Alu 1 310 -2 2079 116 7 0 chr1 144412438 144412739 -98251614 - AluSx SINE Alu -9 303 1 386 228 27 74 chr1 144412757 144412770 -98251583 + MARNA DNA Mariner 403 415 -171 2283 84 3 0 chr1 144412770 144413067 -98251286 - AluSp SINE Alu -15 298 1 386 228 27 74 chr1 144413067 144413079 -98251274 + MARNA DNA Mariner 415 426 -160 1670 162 14 7 chr1 144413079 144413375 -98250978 - AluJo SINE Alu -14 298 1 386 228 27 74 chr1 144413375 144413497 -98250856 + MARNA DNA Mariner 426 544 -42 1745 180 0 0 chr1 144413507 144413796 -98250557 + AluJb SINE Alu 1 289 -23 712 226 0 7 chr1 144413803 144413940 -98250413 + FRAM SINE Alu 11 146 -30 387 0 0 0 chr1 144413945 144413988 -98250365 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 438 228 0 0 chr1 144413999 144414078 -98250275 + AluJ/FLAM SINE Alu 1 79 -233 745 184 0 144 chr1 144414144 144414394 -98249959 + AluJo SINE Alu 90 303 -9 413 121 45 0 chr1 144414433 144414499 -98249854 + AluY SINE Alu 184 252 -59 2132 110 0 0 chr1 144414499 144414791 -98249562 + AluSx SINE Alu 21 312 0 2078 105 3 7 chr1 144414841 144415158 -98249195 + AluSg SINE Alu 2 310 0 2324 82 10 0 chr1 144415849 144416154 -98248199 + AluY SINE Alu 1 308 -3 299 158 32 21 chr1 144416154 144416249 -98248104 + G-rich Low_complexity Low_complexity 2 97 0 2211 94 3 3 chr1 144416391 144416700 -98247653 - AluSg SINE Alu -1 309 1 619 191 76 165 chr1 144416876 144417233 -98247120 + LOR1-int LTR ERV1 594 918 -5758 561 278 40 60 chr1 144417361 144417609 -98246744 + LOR1-int LTR ERV1 2905 3147 -3529 888 175 48 5 chr1 144417879 144418068 -98246285 + LOR1-int LTR ERV1 1101 1297 -489 410 118 0 13 chr1 144418058 144418134 -98246219 + LOR1-int LTR ERV1 1470 1544 -242 * 1508 168 39 11 chr1 144418134 144418414 -98245939 + AluJo SINE Alu 1 288 -24 332 116 54 202 chr1 144418414 144418466 -98245887 + LTR57-int LTR ERVL 980 1091 -4252 2061 165 95 109 chr1 144418466 144418645 -98245708 + LOR1-int LTR ERV1 1204 1384 -5214 1926 144 17 0 chr1 144418645 144418944 -98245409 + AluSx SINE Alu 1 304 -8 2061 165 95 109 chr1 144418944 144419519 -98244834 + LOR1-int LTR ERV1 1384 1965 -4633 2157 110 0 7 chr1 144419519 144419820 -98244533 + AluSx SINE Alu 1 299 -13 2061 165 95 109 chr1 144419820 144420481 -98243872 + LOR1-int LTR ERV1 1965 3850 -2748 654 149 10 149 chr1 144420739 144420903 -98243450 + LOR1-int LTR ERV1 3786 3921 -4199 2163 92 0 7 chr1 144420903 144421197 -98243156 + AluSp SINE Alu 1 292 -21 654 149 10 149 chr1 144421197 144421226 -98243127 + LOR1-int LTR ERV1 3921 3952 -4168 275 62 42 0 chr1 144421359 144421407 -98242946 + LOR1-int LTR ERV1 4783 4832 -1499 703 155 134 7 chr1 144421419 144421561 -98242792 + LOR1-int LTR ERV1 5984 6143 -615 1528 163 22 21 chr1 144421561 144421898 -98242455 + LOR1-int LTR ERV1 6384 7078 -24 2076 125 0 0 chr1 144421898 144422195 -98242158 + AluSx SINE Alu 1 297 -15 436 168 63 74 chr1 144422195 144422290 -98242063 + MER4B LTR ERV1 81 174 -436 1228 142 3 134 chr1 144422290 144422396 -98241957 + MER41B-int LTR ERV1 4610 4728 -3028 2377 69 3 0 chr1 144422396 144422700 -98241653 + AluY SINE Alu 1 305 -6 1991 106 7 10 chr1 144422709 144423001 -98241352 + AluSc SINE Alu 1 291 -18 1228 142 3 134 chr1 144423001 144423222 -98241131 + MER41B-int LTR ERV1 4737 6177 -1579 8595 207 30 18 chr1 144423253 144424627 -98239726 + MER41B-int LTR ERV1 4952 6351 -325 1823 152 3 16 chr1 144424627 144424943 -98239410 + AluJb SINE Alu 1 312 0 8595 207 30 18 chr1 144424943 144425272 -98239081 + MER41B-int LTR ERV1 6351 6675 -1 701 184 21 7 chr1 144425342 144425483 -98238870 + MER41B LTR ERV1 148 290 -345 218 281 0 52 chr1 144426366 144426393 -98237960 + A-rich Low_complexity Low_complexity 5 32 -63 2387 67 0 3 chr1 144426393 144426705 -98237648 + AluY SINE Alu 1 311 0 218 281 0 52 chr1 144426705 144426773 -98237580 + A-rich Low_complexity Low_complexity 32 95 0 1827 109 51 10 chr1 144426882 144427175 -98237178 + AluSq SINE Alu 1 305 -8 1934 136 0 16 chr1 144427437 144427574 -98236779 + AluSx SINE Alu 1 139 -173 2124 119 0 0 chr1 144427574 144427877 -98236476 + AluSg SINE Alu 1 303 -7 1934 136 0 16 chr1 144427877 144428049 -98236304 + AluSx SINE Alu 139 305 -7 1214 192 83 20 chr1 144428075 144428377 -98235976 + MER41B LTR ERV1 279 599 -36 2166 98 16 3 chr1 144429018 144429324 -98235029 + AluSx SINE Alu 1 310 -2 616 126 11 0 chr1 144429327 144429414 -98234939 + AluSx SINE Alu 2 89 -224 2301 83 3 0 chr1 144429416 144429716 -98234637 + AluY SINE Alu 1 301 -10 1807 84 0 0 chr1 144429719 144429956 -98234397 + AluSx SINE Alu 76 312 0 204 158 0 0 chr1 144430140 144430178 -98234175 + A-rich Low_complexity Low_complexity 1 38 0 183 299 0 75 chr1 144430683 144430750 -98233603 - L3 LINE CR1 -509 1068 1007 2029 92 16 30 chr1 144430923 144431226 -98233127 + AluSg SINE Alu 1 299 -11 2196 81 0 7 chr1 144431227 144431522 -98232831 + AluY SINE Alu 1 293 -18 2131 103 0 0 chr1 144431590 144431882 -98232471 + AluSx SINE Alu 1 292 -20 2155 102 7 0 chr1 144432039 144432344 -98232009 + AluSx SINE Alu 1 307 -5 2248 77 3 7 chr1 144432617 144432916 -98231437 + AluY SINE Alu 1 298 -13 2039 119 7 0 chr1 144432987 144433281 -98231072 + AluSx SINE Alu 1 296 -16 430 234 57 82 chr1 144434120 144434278 -98230075 + MIR SINE MIR 45 198 -64 2197 84 0 13 chr1 144434301 144434610 -98229743 - AluY SINE Alu -5 306 2 572 251 126 0 chr1 144434644 144434819 -98229534 + MIR SINE MIR 7 203 -59 464 308 36 46 chr1 144434862 144434908 -98229445 + L3 LINE CR1 939 984 -593 2138 87 7 13 chr1 144434908 144435208 -98229145 + AluSp SINE Alu 1 298 -15 464 308 36 46 chr1 144435208 144435356 -98228997 + L3 LINE CR1 984 1131 -446 854 149 0 0 chr1 144435520 144435654 -98228699 - FRAM SINE Alu -19 157 24 338 298 199 65 chr1 144435783 144435857 -98228496 + L3 LINE CR1 1276 1339 -238 2187 98 7 3 chr1 144435857 144436164 -98228189 + AluSg SINE Alu 1 308 -2 338 298 199 65 chr1 144436164 144436351 -98228002 + L3 LINE CR1 1339 1572 -5 1729 149 0 34 chr1 144436369 144436692 -98227661 - AluJo SINE Alu 0 312 1 226 48 95 0 chr1 144436916 144436958 -98227395 + GA-rich Low_complexity Low_complexity 1 46 0 2146 82 10 0 chr1 144437604 144437896 -98226457 + AluSx SINE Alu 1 295 -17 197 284 0 108 chr1 144438270 144438344 -98226009 + L2 LINE L2 3207 3272 0 250 222 0 78 chr1 144438817 144438860 -98225493 - L1MB7 LINE L1 -31 6153 6119 2076 86 45 3 chr1 144438860 144439151 -98225202 - AluSx SINE Alu -9 303 1 250 222 0 78 chr1 144439151 144439197 -98225156 - L1MB7 LINE L1 -65 6119 6071 370 241 63 82 chr1 144441631 144441771 -98222582 - MIR SINE MIR -57 205 69 2230 99 3 0 chr1 144441771 144442074 -98222279 - AluSp SINE Alu -9 304 1 370 241 63 82 chr1 144442074 144442140 -98222213 - MIR SINE MIR -193 69 3 1410 188 34 24 chr1 144443332 144443630 -98220723 + AluJo SINE Alu 3 303 -9 1456 217 13 30 chr1 144443662 144443795 -98220558 + AluJb SINE Alu 1 135 -167 2101 109 10 0 chr1 144443795 144444088 -98220265 + AluSx SINE Alu 1 296 -16 1456 217 13 30 chr1 144444088 144444258 -98220095 + AluJb SINE Alu 135 299 -3 991 185 0 0 chr1 144444261 144444423 -98219930 + FRAM SINE Alu 1 162 -4 219 304 61 52 chr1 144444496 144444611 -98219742 - L3 LINE CR1 -495 1082 967 240 280 16 80 chr1 144444802 144444865 -98219488 - L3 LINE CR1 -731 846 793 2250 99 0 0 chr1 144444865 144445167 -98219186 - AluSx SINE Alu -10 302 1 240 280 16 80 chr1 144445167 144445228 -98219125 - L3 LINE CR1 -784 793 730 * 577 307 194 7 chr1 144445219 144445502 -98218851 - L2 LINE L2 -18 3295 2960 2306 87 3 0 chr1 144445502 144445802 -98218551 + AluSp SINE Alu 1 301 -12 1209 139 43 19 chr1 144445842 144446051 -98218302 - AluJo SINE Alu -12 300 87 2199 111 0 13 chr1 144446256 144446572 -98217781 - AluSx SINE Alu 0 312 1 626 193 65 201 chr1 144446587 144446940 -98217413 - L2 LINE L2 0 3313 3009 317 203 0 17 chr1 144447038 144447097 -98217256 - L1MC4 LINE L1 -1333 6709 6652 304 196 0 0 chr1 144447109 144447160 -98217193 - L1MC4 LINE L1 -1339 6703 6653 2186 105 0 3 chr1 144447220 144447514 -98216839 - AluSx SINE Alu -19 293 1 2162 117 0 3 chr1 144449419 144449727 -98214626 - AluSq SINE Alu -6 307 1 587 318 69 0 chr1 144450016 144450189 -98214164 + MIR SINE MIR 14 198 -64 497 277 71 33 chr1 144450337 144450521 -98213832 + MIR SINE MIR 4 194 -68 583 191 55 136 chr1 144452194 144452393 -98211960 + AluJo SINE Alu 85 267 -45 2332 72 0 0 chr1 144453301 144453592 -98210761 + AluSc SINE Alu 1 291 -18 1112 150 83 0 chr1 144453798 144453991 -98210362 + MER3 DNA MER1_type 1 209 0 1355 193 95 0 chr1 144454174 144454459 -98209894 + AluSx SINE Alu 1 312 0 1759 156 17 0 chr1 144454473 144454761 -98209592 + AluJb SINE Alu 1 293 -19 2353 57 0 3 chr1 144454764 144455063 -98209290 + AluY SINE Alu 1 298 -13 2317 80 0 0 chr1 144455152 144455452 -98208901 - AluY SINE Alu -11 300 1 2297 66 7 7 chr1 144455513 144455817 -98208536 - AluY SINE Alu -7 304 1 349 235 59 76 chr1 144455876 144455995 -98208358 - L2 LINE L2 -8 3305 3189 1808 108 29 79 chr1 144456070 144456385 -98207968 + AluSx SINE Alu 1 299 -13 1598 160 0 14 chr1 144456494 144456799 -98207554 - AluJo SINE Alu 0 306 6 2301 96 3 6 chr1 144456833 144457147 -98207206 - AluSq SINE Alu 0 313 1 265 172 103 78 chr1 144457147 144457263 -98207090 + MER112 DNA MER1_type 141 259 -1 265 278 87 16 chr1 144457306 144457432 -98206921 + L1ME4a LINE L1 5964 6098 -23 1760 139 0 23 chr1 144457501 144457803 -98206550 + AluSx SINE Alu 3 297 -15 503 306 65 16 chr1 144457848 144458096 -98206257 + MIR SINE MIR 3 262 0 722 168 0 84 chr1 144458105 144458135 -98206218 - FLAM_A SINE Alu -170 132 101 1741 167 7 10 chr1 144458135 144458434 -98205919 + AluJb SINE Alu 1 298 -14 722 168 0 84 chr1 144458434 144458546 -98205807 - FLAM_A SINE Alu -201 101 2 655 194 73 0 chr1 144459440 144459564 -98204789 + FLAM_C SINE Alu 1 133 0 496 156 10 21 chr1 144459568 144459664 -98204689 + AluSc SINE Alu 133 227 -82 1381 167 0 4 chr1 144459673 144459907 -98204446 - AluJb SINE Alu -79 233 1 335 227 155 0 chr1 144459976 144460073 -98204280 + L1ME LINE L1 5680 5791 -330 2330 76 0 16 chr1 144460151 144460330 -98204023 - AluSg SINE Alu 0 310 137 2292 56 7 0 chr1 144460330 144460618 -98203735 - AluY SINE Alu -21 290 1 2330 76 0 16 chr1 144460618 144460753 -98203600 - AluSg SINE Alu -173 137 1 2071 111 3 19 chr1 144460757 144461073 -98203280 - AluSx SINE Alu 0 312 2 1239 118 0 0 chr1 144461074 144461252 -98203101 - AluSq SINE Alu -7 306 129 908 73 0 32 chr1 144461676 144461800 -98202553 - AluSq SINE Alu -189 124 5 1682 180 0 33 chr1 144461803 144461965 -98202388 - AluJb SINE Alu -17 295 146 1932 110 13 45 chr1 144461965 144462274 -98202079 - AluSx SINE Alu -13 299 1 1682 180 0 33 chr1 144462274 144462416 -98201937 - AluJb SINE Alu -166 146 1 2060 107 14 0 chr1 144462519 144462808 -98201545 + AluSp SINE Alu 1 293 -20 180 277 264 57 chr1 144462819 144462978 -98201375 - L3 LINE CR1 -1 1576 1385 24 53 0 0 chr1 144465100 144465138 -98199215 + AT_rich Low_complexity Low_complexity 1 38 0 753 99 124 25 chr1 144465138 144465259 -98199094 - FLAM_C SINE Alu 0 133 1 2030 103 17 3 chr1 144466029 144466321 -98198032 - AluSx SINE Alu -16 296 1 269 252 81 81 chr1 144466560 144466671 -98197682 + L2 LINE L2 3149 3259 -13 2521 42 0 3 chr1 144466855 144467165 -98197188 - AluY SINE Alu -2 309 1 2036 99 0 20 chr1 144467417 144467574 -98196779 - AluSx SINE Alu -24 288 138 2337 83 0 6 chr1 144467574 144467887 -98196466 - AluY SINE Alu 0 311 1 2036 99 0 20 chr1 144467887 144468023 -98196330 - AluSx SINE Alu -174 138 1 779 148 113 7 chr1 144468031 144468173 -98196180 - AluJb SINE Alu -22 290 134 2290 60 0 10 chr1 144468173 144468475 -98195878 - AluY SINE Alu -12 299 1 24 0 0 0 chr1 144468546 144468570 -98195783 + AT_rich Low_complexity Low_complexity 1 24 0 1725 170 0 0 chr1 144468580 144468869 -98195484 + AluJb SINE Alu 1 289 -23 2291 57 0 13 chr1 144469203 144469497 -98194856 + AluY SINE Alu 1 291 -16 213 119 0 0 chr1 144469497 144469539 -98194814 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2305 82 0 0 chr1 144469754 144470046 -98194307 + AluSq SINE Alu 1 292 -21 360 284 0 0 chr1 144470223 144470304 -98194049 - MIR SINE MIR -94 114 34 1050 231 33 16 chr1 144470355 144470533 -98193820 - MIR SINE MIR -11 251 66 1753 164 7 0 chr1 144470533 144470826 -98193527 + AluJo SINE Alu 3 297 -15 1050 231 33 16 chr1 144470826 144470889 -98193464 - MIR SINE MIR -196 66 6 2139 105 3 3 chr1 144472342 144472648 -98191705 - AluSq SINE Alu -7 306 1 193 219 0 0 chr1 144473770 144473802 -98190551 - MIR SINE MIR -143 65 34 1858 144 3 3 chr1 144473871 144474156 -98190197 + AluJb SINE Alu 1 285 -27 198 0 0 0 chr1 144474156 144474178 -98190175 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 403 211 21 21 chr1 144475902 144475916 -98188437 + MER5A DNA MER1_type 3 16 -173 252 248 62 71 chr1 144475916 144476029 -98188324 - MER5A DNA MER1_type -2 187 65 1819 114 62 3 chr1 144476213 144476503 -98187850 - AluSx SINE Alu -5 307 1 499 241 82 60 chr1 144476548 144476743 -98187610 + MLT1K LTR MaLR 315 517 -71 2388 81 0 0 chr1 144476743 144477051 -98187302 - AluY SINE Alu -3 308 1 499 241 82 60 chr1 144477051 144477087 -98187266 + MLT1K LTR MaLR 517 551 -37 2276 110 0 0 chr1 144477161 144477471 -98186882 - AluSg SINE Alu 0 310 1 729 142 0 30 chr1 144477475 144477609 -98186744 - L1PA16 LINE L1 -2 6164 6035 756 232 46 0 chr1 144477615 144477766 -98186587 - AluJo SINE Alu -8 294 137 2182 109 0 3 chr1 144477769 144478072 -98186281 - AluSx SINE Alu -10 302 1 255 172 0 62 chr1 144478073 144478137 -98186216 - AluJo SINE Alu -160 142 83 1100 115 0 24 chr1 144478137 144478302 -98186051 - AluSg/x SINE Alu -18 292 132 1851 71 59 4 chr1 144478302 144478557 -98185796 - AluSp SINE Alu -10 303 35 842 147 62 14 chr1 144478575 144478736 -98185617 - L1PA16 LINE L1 -163 6003 5835 290 244 175 38 chr1 144478736 144478896 -98185457 - L2 LINE L2 -19 3294 3113 2316 90 3 0 chr1 144478900 144479211 -98185142 + AluSp SINE Alu 1 312 -1 2112 103 0 10 chr1 144479474 144479774 -98184579 + AluSc SINE Alu 1 297 -12 1601 178 14 0 chr1 144479780 144480072 -98184281 + AluJo SINE Alu 3 298 -14 188 83 0 28 chr1 144480135 144480171 -98184182 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 741 142 26 0 chr1 144480178 144480291 -98184062 - FLAM_C SINE Alu -15 118 3 628 280 30 10 chr1 144480564 144480764 -98183589 - MLT1L LTR MaLR -2 613 410 287 311 121 8 chr1 144480892 144481024 -98183329 - MLT1L LTR MaLR -349 266 120 1390 165 117 19 chr1 144481112 144481421 -98182932 + MER44D DNA MER2_type 1 609 0 1873 102 65 3 chr1 144481440 144481734 -98182619 - AluSp SINE Alu -1 312 1 890 197 62 58 chr1 144481842 144482101 -98182252 - AluJb SINE Alu -51 261 2 224 159 0 0 chr1 144482101 144482145 -98182208 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 239 53 0 26 chr1 144482245 144482283 -98182070 + (GGA)n Simple_repeat Simple_repeat 2 38 0 317 145 16 0 chr1 144482607 144482669 -98181684 + (CCG)n Simple_repeat Simple_repeat 2 64 0 289 330 53 0 chr1 144483903 144484020 -98180333 - MIR SINE MIR -65 143 50 2355 36 3 67 chr1 144484634 144484963 -98179390 + AluY SINE Alu 1 308 -3 716 70 10 0 chr1 144484865 144484965 -98179388 + AluY SINE Alu 210 310 -1 1831 146 3 50 chr1 144486104 144486427 -98177926 + AluSx SINE Alu 1 308 -4 268 263 0 0 chr1 144486518 144486575 -98177778 + U6 snRNA snRNA 50 106 -1 204 208 57 19 chr1 144486622 144486675 -98177678 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 2055 140 0 3 chr1 144486717 144487024 -98177329 - AluSx SINE Alu -6 306 1 605 193 0 0 chr1 144487026 144487135 -98177218 - AluJo/FLAM SINE Alu -203 109 1 1905 146 0 24 chr1 144487298 144487623 -98176730 - AluSx SINE Alu 0 318 1 321 253 60 12 chr1 144487679 144487762 -98176591 - L2 LINE L2 -18 3295 3209 2212 106 3 0 chr1 144487881 144488183 -98176170 - AluSq SINE Alu -8 305 3 1361 102 0 6 chr1 144488328 144488504 -98175849 + AluSq SINE Alu 1 175 -138 915 104 0 22 chr1 144489005 144489140 -98175213 + FLAM_C SINE Alu 2 133 0 451 289 129 43 chr1 144489147 144489379 -98174974 - L3 LINE CR1 -739 838 587 863 219 45 5 chr1 144489389 144489590 -98174763 - AluJb SINE Alu -19 293 85 2445 84 3 0 chr1 144489659 144489956 -98174397 + AluSp SINE Alu 1 298 -15 442 270 7 22 chr1 144489978 144490115 -98174238 + L2 LINE L2 3179 3313 0 1805 166 0 0 chr1 144490122 144490405 -98173948 + AluJb SINE Alu 1 283 -29 231 250 14 14 chr1 144490408 144490480 -98173873 - L3 LINE CR1 -1099 478 407 1565 174 41 20 chr1 144490789 144491082 -98173271 - AluJb SINE Alu -13 299 1 1382 151 176 21 chr1 144492670 144492949 -98171404 - MER7A DNA MER2_type -26 320 1 2455 81 3 0 chr1 144494737 144495046 -98169307 - AluY SINE Alu -1 310 1 1228 183 0 23 chr1 144495234 144495453 -98168900 + AluJo SINE Alu 81 294 -18 502 145 0 137 chr1 144495466 144495544 -98168809 + AluJ/FLAM SINE Alu 2 62 -250 2019 147 0 0 chr1 144495544 144495858 -98168495 - AluSx SINE Alu 0 314 1 502 145 0 137 chr1 144495858 144495895 -98168458 + AluJ/FLAM SINE Alu 62 102 -210 937 179 50 6 chr1 144495903 144496082 -98168271 - AluJo SINE Alu -115 197 11 2049 110 7 17 chr1 144497536 144497826 -98166527 - AluSx SINE Alu -25 287 1 500 301 62 31 chr1 144498218 144498444 -98165909 - MIR SINE MIR -1 261 29 24 0 0 0 chr1 144498471 144498495 -98165858 + AT_rich Low_complexity Low_complexity 1 24 0 448 188 21 0 chr1 144498538 144498634 -98165719 + MIR SINE MIR 67 164 -98 1927 134 20 33 chr1 144498960 144499100 -98165253 + AluJb SINE Alu 3 143 -169 1972 136 17 10 chr1 144499100 144499401 -98164952 + AluSx SINE Alu 1 303 -9 1927 134 20 33 chr1 144499401 144499565 -98164788 + AluJb SINE Alu 143 303 -9 2318 102 0 3 chr1 144499640 144499944 -98164409 + AluSg SINE Alu 1 303 -7 530 194 10 0 chr1 144500491 144500594 -98163759 + AluSg/x SINE Alu 189 292 -17 654 134 0 45 chr1 144500628 144500740 -98163613 + FAM SINE Alu 36 142 -43 677 250 0 0 chr1 144500925 144501057 -98163296 - FLAM_A SINE Alu -9 133 2 665 186 57 8 chr1 144501794 144501918 -98162435 - AluJb SINE Alu -181 131 2 1881 143 20 10 chr1 144503048 144503349 -98161004 - AluSq SINE Alu -9 304 1 279 305 170 0 chr1 144503350 144503491 -98160862 + MIR SINE MIR 28 192 -70 2245 121 0 0 chr1 144503553 144503851 -98160502 + AluSx SINE Alu 1 298 -14 2179 122 7 0 chr1 144505350 144505645 -98158708 - AluSq SINE Alu -16 297 1 1598 155 19 8 chr1 144507638 144507902 -98156451 + AluJb SINE Alu 27 293 -19 198 278 0 0 chr1 144507927 144507981 -98156372 + MIR SINE MIR 195 248 -14 1706 169 4 4 chr1 144507988 144508261 -98156092 + AluSx SINE Alu 1 273 -39 2296 90 7 7 chr1 144508640 144508940 -98155413 + AluY SINE Alu 1 300 -11 1626 200 3 27 chr1 144508950 144509250 -98155103 + AluJb SINE Alu 1 293 -19 30 0 0 0 chr1 144509324 144509354 -98154999 + AT_rich Low_complexity Low_complexity 1 30 0 1837 155 3 25 chr1 144509367 144509684 -98154669 + AluJo SINE Alu 3 312 0 421 216 162 65 chr1 144509721 144509906 -98154447 + MER46C DNA MER2_type 21 223 -115 237 159 0 0 chr1 144509939 144509983 -98154370 + A-rich Low_complexity Low_complexity 1 44 0 1262 187 92 14 chr1 144510218 144510501 -98153852 + MER2 DNA MER2_type 41 345 0 436 279 25 8 chr1 144510505 144510627 -98153726 + L2 LINE L2 3190 3313 0 2976 261 118 42 chr1 144510827 144511323 -98153030 + L2 LINE L2 1127 1584 -1730 2248 102 3 10 chr1 144511323 144511628 -98152725 + AluSx SINE Alu 1 303 -9 2976 261 118 42 chr1 144511628 144511931 -98152422 + L2 LINE L2 1584 1862 -1452 1693 166 10 38 chr1 144511931 144512245 -98152108 - AluJo SINE Alu -7 305 1 2976 261 118 42 chr1 144512245 144512840 -98151513 + L2 LINE L2 1862 2629 -685 1071 179 73 37 chr1 144512850 144513096 -98151257 - MLT2D LTR ERVL -48 366 112 6065 82 66 0 chr1 144513112 144514010 -98150343 - L1PA13 LINE L1 -8 6155 5226 835 216 63 35 chr1 144514010 144514265 -98150088 + L2 LINE L2 2616 2877 -437 718 100 0 0 chr1 144514292 144514392 -98149961 + AluSg/x SINE Alu 209 308 -1 991 301 86 15 chr1 144514395 144514791 -98149562 + L2 LINE L2 2886 3309 -4 2263 110 0 31 chr1 144514843 144515162 -98149191 + AluSx SINE Alu 1 309 -3 846 177 0 0 chr1 144515162 144515292 -98149061 + AluJb SINE Alu 134 263 -49 292 214 0 18 chr1 144515293 144515349 -98149004 + AluSc SINE Alu 126 180 -119 1009 198 0 38 chr1 144515352 144515564 -98148789 + AluJo SINE Alu 85 288 -24 800 71 20 0 chr1 144515762 144515861 -98148492 - AluSg/x SINE Alu -16 294 194 21 36 0 0 chr1 144515936 144515964 -98148389 + AT_rich Low_complexity Low_complexity 1 28 0 2393 94 0 3 chr1 144516939 144517238 -98147115 + AluSx SINE Alu 1 298 -14 231 219 0 62 chr1 144517240 144517336 -98147017 + L1MC4 LINE L1 6614 6703 -1339 491 243 43 0 chr1 144517609 144517749 -98146604 - MIR SINE MIR 0 262 117 2239 101 0 19 chr1 144517831 144518138 -98146215 + AluSg SINE Alu 1 301 -9 352 313 0 27 chr1 144518300 144518412 -98145941 - L2 LINE L2 -1 3271 3163 206 118 0 0 chr1 144518439 144518473 -98145880 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 564 191 9 0 chr1 144518489 144518594 -98145759 + AluJb SINE Alu 198 303 -9 258 287 178 0 chr1 144518894 144518995 -98145358 - L2 LINE L2 -4 3309 3191 243 319 11 11 chr1 144519015 144519109 -98145244 - L2 LINE L2 -939 2375 2282 2120 132 7 3 chr1 144519307 144519611 -98144742 + AluSq SINE Alu 1 305 -8 813 195 32 7 chr1 144519633 144519787 -98144566 - FRAM SINE Alu -6 160 3 789 242 0 12 chr1 144519899 144520064 -98144289 + FRAM SINE Alu 1 163 -13 2266 100 6 16 chr1 144520112 144520423 -98143930 + AluSp SINE Alu 1 308 -5 600 303 97 17 chr1 144520531 144520820 -98143533 - L2 LINE L2 -331 2982 2672 424 229 61 15 chr1 144520832 144520963 -98143390 + L2 LINE L2 2441 2577 -737 786 148 0 22 chr1 144521025 144521160 -98143193 + FRAM SINE Alu 40 171 -5 2351 99 3 10 chr1 144521160 144521473 -98142880 + AluY SINE Alu 1 311 0 314 295 78 46 chr1 144521738 144521955 -98142398 - MIR SINE MIR -7 255 32 1173 185 56 28 chr1 144521958 144522244 -98142109 + L1M4 LINE L1 4922 5215 -931 234 336 53 0 chr1 144522270 144522383 -98141970 + L2 LINE L2 2045 2163 -1151 1969 137 0 55 chr1 144522413 144522741 -98141612 - AluSx SINE Alu -1 311 2 255 31 0 0 chr1 144522741 144522773 -98141580 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1949 116 56 4 chr1 144522773 144523041 -98141312 - AluSg SINE Alu -28 282 1 855 190 43 25 chr1 144523043 144523206 -98141147 - FRAM SINE Alu 0 166 1 454 76 0 51 chr1 144523531 144523610 -98140743 - Alu SINE Alu 0 312 238 24 0 0 0 chr1 144523833 144523857 -98140496 + AT_rich Low_complexity Low_complexity 1 24 0 1190 158 50 5 chr1 144523857 144524059 -98140294 - AluJo SINE Alu -13 299 89 510 160 0 30 chr1 144524165 144524265 -98140088 + AluSg/x SINE Alu 198 294 -16 1729 113 3 109 chr1 144524272 144524592 -98139761 + AluJo SINE Alu 11 296 -16 328 309 254 0 chr1 144524696 144524877 -98139476 + MIR SINE MIR 2 228 -34 1825 190 3 0 chr1 144524998 144525309 -98139044 + AluJo SINE Alu 1 312 0 279 309 45 0 chr1 144525398 144525508 -98138845 + L2 LINE L2 2948 3062 -251 252 159 0 0 chr1 144525509 144525553 -98138800 + AluJb SINE Alu 172 215 -87 379 319 51 29 chr1 144525611 144525749 -98138604 + L2 LINE L2 3172 3312 -1 38 68 0 0 chr1 144525811 144525884 -98138469 + AT_rich Low_complexity Low_complexity 1 73 0 2393 88 0 0 chr1 144526778 144527074 -98137279 + AluY SINE Alu 1 296 -15 2229 90 35 3 chr1 144527192 144527481 -98136872 - AluSx SINE Alu -14 298 1 234 123 175 18 chr1 144527557 144527614 -98136739 + L1MB8 LINE L1 6112 6177 -1 234 379 11 0 chr1 144527614 144527701 -98136652 + MER91B DNA MER1_type 103 190 0 2173 129 3 0 chr1 144527739 144528042 -98136311 + AluSx SINE Alu 1 304 -8 248 286 14 0 chr1 144528089 144528159 -98136194 + L1MC/D LINE L1 4915 4985 -1161 1819 162 3 26 chr1 144528165 144528474 -98135879 + AluJb SINE Alu 6 307 -5 573 198 0 0 chr1 144528490 144528601 -98135752 - AluJo SINE Alu -6 306 196 813 126 0 0 chr1 144528603 144528714 -98135639 - AluJo SINE Alu -201 111 1 2387 84 0 3 chr1 144528801 144529097 -98135256 - AluY SINE Alu -16 295 1 280 290 162 50 chr1 144529287 144529401 -98134952 + L1MC/D LINE L1 5318 5418 -2390 2679 48 3 6 chr1 144529401 144529715 -98134638 + AluSp SINE Alu 1 313 0 280 290 162 50 chr1 144529715 144529903 -98134450 + L1MC/D LINE L1 5418 5654 -2154 2105 139 0 13 chr1 144530249 144530385 -98133968 + AluSx SINE Alu 1 137 -175 2015 143 3 7 chr1 144530385 144530692 -98133661 + AluSx SINE Alu 1 306 -6 2105 139 0 13 chr1 144530692 144530858 -98133495 + AluSx SINE Alu 137 299 -13 2279 94 3 0 chr1 144530989 144531277 -98133076 + AluSc SINE Alu 1 289 -20 2280 92 0 0 chr1 144531453 144531736 -98132617 - AluSc SINE Alu -1 308 26 2697 78 5 73 chr1 144531811 144531985 -98132368 + L1PA8 LINE L1 5673 5857 -315 1873 131 4 0 chr1 144531985 144532245 -98132108 + AluSp SINE Alu 34 294 -19 1812 100 4 19 chr1 144532245 144532503 -98131850 + AluY SINE Alu 44 298 -13 2697 78 5 73 chr1 144532503 144532750 -98131603 + L1PA8 LINE L1 5855 6066 -106 2108 135 0 3 chr1 144532750 144533054 -98131299 + AluSx SINE Alu 1 303 -9 685 234 76 15 chr1 144533218 144533415 -98130938 + L2 LINE L2 2129 2337 -977 1205 124 55 46 chr1 144533421 144533638 -98130715 - MER2 DNA MER2_type 0 345 127 1130 208 9 0 chr1 144533644 144533860 -98130493 + AluJo SINE Alu 74 291 -21 2207 93 45 0 chr1 144533866 144534155 -98130198 + AluSx SINE Alu 1 302 -10 737 192 54 0 chr1 144534155 144534285 -98130068 - MER2 DNA MER2_type -208 137 1 791 258 225 29 chr1 144534286 144534538 -98129815 + L2 LINE L2 2343 2544 -769 2252 110 3 0 chr1 144534538 144534828 -98129525 - AluSg SINE Alu -19 291 1 791 258 225 29 chr1 144534828 144535349 -98129004 + L2 LINE L2 2544 3278 -35 1769 155 11 0 chr1 144535353 144535631 -98128722 - AluJo SINE Alu -31 281 1 2718 7 0 0 chr1 144535889 144536191 -98128162 + AluYa5 SINE Alu 1 302 -9 1986 119 0 26 chr1 144536198 144536501 -98127852 + AluSg SINE Alu 1 295 -15 478 188 59 0 chr1 144536608 144536693 -98127660 + L2 LINE L2 3210 3299 -14 2279 77 3 3 chr1 144536695 144536994 -98127359 + AluSx SINE Alu 1 299 -13 976 133 0 0 chr1 144537017 144537167 -98127186 + AluY SINE Alu 143 292 -19 635 312 53 32 chr1 144537396 144537643 -98126710 - MIR SINE MIR 0 262 11 240 315 126 0 chr1 144538059 144538170 -98126183 + L2 LINE L2 2935 3059 -213 1858 108 8 0 chr1 144538312 144538571 -98125782 - AluSg SINE Alu -15 295 35 1536 166 3 25 chr1 144538594 144538763 -98125590 - AluJo SINE Alu -11 301 139 2213 88 3 22 chr1 144538763 144539082 -98125271 - AluSp SINE Alu 0 313 1 1536 166 3 25 chr1 144539082 144539196 -98125157 - AluJo SINE Alu -173 139 24 210 37 0 0 chr1 144539207 144539234 -98125119 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1983 126 3 3 chr1 144539370 144539672 -98124681 + AluSx SINE Alu 1 302 -10 2174 104 0 0 chr1 144539731 144540029 -98124324 + AluSx SINE Alu 7 304 -8 656 236 18 55 chr1 144540392 144540612 -98123741 + L1MC5 LINE L1 7720 7931 -30 806 231 22 70 chr1 144540615 144540844 -98123509 + AluJo SINE Alu 1 218 -94 375 23 0 0 chr1 144540885 144540912 -98123441 + (TG)n Simple_repeat Simple_repeat 1 71 0 375 23 0 0 chr1 144540912 144540956 -98123397 + (TG)n Simple_repeat Simple_repeat 2 45 0 2021 99 14 7 chr1 144540967 144541251 -98123102 - AluSg SINE Alu -24 286 1 1320 208 47 0 chr1 144541279 144541553 -98122800 + AluJo SINE Alu 3 289 -23 2216 78 0 56 chr1 144541768 144542090 -98122263 - AluY SINE Alu -7 304 1 2079 106 0 7 chr1 144542700 144542993 -98121360 + AluSp SINE Alu 4 294 -19 1349 199 42 11 chr1 144543056 144543342 -98121011 - AluJo SINE Alu -17 295 1 1713 145 37 0 chr1 144543351 144543648 -98120705 - AluSx SINE Alu -3 309 2 2114 92 17 0 chr1 144543767 144544062 -98120291 + AluSp SINE Alu 1 300 -13 226 139 0 0 chr1 144545166 144545202 -98119151 + L2 LINE L2 3277 3312 -1 289 330 53 0 chr1 144545562 144545679 -98118674 + MIR SINE MIR 50 143 -65 2169 54 0 4 chr1 144548225 144548502 -98115851 + AluSc SINE Alu 1 276 -33 189 0 0 0 chr1 144548502 144548523 -98115830 + (CA)n Simple_repeat Simple_repeat 1 21 0 899 188 26 48 chr1 144548820 144548864 -98115489 + L1MD3 LINE L1 7739 7782 -213 1591 144 53 11 chr1 144548864 144549148 -98115205 + AluJb SINE Alu 1 296 -16 899 188 26 48 chr1 144549148 144549332 -98115021 + L1MD3 LINE L1 7782 7962 -33 817 211 24 0 chr1 144549335 144549501 -98114852 - AluJo/FRAM SINE Alu -9 303 134 2463 57 0 0 chr1 144549501 144549801 -98114552 - AluY SINE Alu -11 300 1 2649 193 72 3 chr1 144549802 144550423 -98113930 - L1MB7 LINE L1 -111 6073 5410 3593 120 26 20 chr1 144550427 144550968 -98113385 - LTR14 LTR ERVK -4 544 1 21908 174 63 56 chr1 144550970 144552274 -98112079 - HERVKC4 LTR ERVK -6 5256 3962 2277 85 3 0 chr1 144552274 144552579 -98111774 + AluSp SINE Alu 1 306 -7 21908 174 63 56 chr1 144552579 144555970 -98108383 - HERVKC4 LTR ERVK -1300 3962 519 5559 147 31 39 chr1 144555970 144557049 -98107304 - MER11C LTR ERVK 0 1071 1 21908 174 63 56 chr1 144557049 144557572 -98106781 - HERVKC4 LTR ERVK -4743 519 1 3758 103 26 20 chr1 144557572 144558116 -98106237 - LTR14 LTR ERVK 0 548 2 1482 181 29 26 chr1 144558129 144558201 -98106152 - L1MB7 LINE L1 -743 5403 5333 1723 191 0 7 chr1 144558201 144558510 -98105843 - AluJo SINE Alu -5 307 1 1482 181 29 26 chr1 144558510 144558538 -98105815 - L1MB7 LINE L1 -813 5333 5307 2180 100 0 0 chr1 144558538 144558829 -98105524 - AluSc SINE Alu -18 291 1 1482 181 29 26 chr1 144558829 144559075 -98105278 - L1MB7 LINE L1 -839 5307 5055 32 29 0 0 chr1 144559219 144559253 -98105100 + AT_rich Low_complexity Low_complexity 1 34 0 6259 51 3 32 chr1 144559269 144560132 -98104221 + SVA Other Other 549 1386 0 32 0 0 0 chr1 144560538 144560570 -98103783 + AT_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chr1 144560582 144560606 -98103747 + (A)n Simple_repeat Simple_repeat 1 24 0 1999 83 0 40 chr1 144560618 144560919 -98103434 + AluY SINE Alu 1 289 -22 1355 198 156 6 chr1 144560938 144561119 -98103234 - L1MB7 LINE L1 -1109 5037 4885 2192 107 0 3 chr1 144561119 144561427 -98102926 + AluSg1 SINE Alu 1 307 -2 1355 198 156 6 chr1 144561427 144561598 -98102755 - L1MB7 LINE L1 -1261 4885 4632 2134 144 19 32 chr1 144561598 144561967 -98102386 - THE1B LTR MaLR 0 364 1 2085 110 0 0 chr1 144561977 144562267 -98102086 - AluY SINE Alu -21 290 1 1518 181 11 7 chr1 144562296 144562583 -98101770 + AluJo SINE Alu 1 288 -24 185 300 133 11 chr1 144563005 144563095 -98101258 + L2 LINE L2 3172 3272 0 1805 146 7 3 chr1 144563129 144563423 -98100930 + AluSx SINE Alu 1 295 -17 1716 175 21 0 chr1 144563441 144563732 -98100621 + AluJo SINE Alu 1 297 -15 1577 153 22 41 chr1 144563746 144564060 -98100293 + AluJo SINE Alu 1 308 -4 1795 154 3 3 chr1 144564107 144564432 -98099921 - AluSx SINE Alu 0 325 1 1211 232 34 24 chr1 144564440 144564737 -98099616 - AluJo SINE Alu -2 300 1 327 248 119 55 chr1 144564752 144564861 -98099492 + L2 LINE L2 3149 3264 -8 1610 129 92 4 chr1 144564923 144565221 -98099132 + AluSx SINE Alu 3 312 0 2197 106 6 6 chr1 144565242 144565554 -98098799 + AluSq SINE Alu 1 312 -1 2501 40 0 0 chr1 144565563 144565860 -98098493 + AluY SINE Alu 1 297 -14 568 230 116 98 chr1 144566271 144566474 -98097879 - L1ME3A LINE L1 -290 5880 5682 2040 117 0 3 chr1 144566474 144566774 -98097579 - AluSq SINE Alu -8 305 7 568 230 116 98 chr1 144566774 144566966 -98097387 - L1ME3A LINE L1 -488 5682 5495 1730 149 22 48 chr1 144566966 144567133 -98097220 - AluSx SINE Alu -5 307 150 2252 80 10 0 chr1 144567133 144567432 -98096921 - AluY SINE Alu -9 302 1 1730 149 22 48 chr1 144567432 144567579 -98096774 - AluSx SINE Alu -162 150 1 1431 174 19 55 chr1 144567581 144567891 -98096462 - AluJo SINE Alu -13 299 1 568 230 116 98 chr1 144567891 144568190 -98096163 - L1ME3A LINE L1 -675 5495 5188 2293 80 0 7 chr1 144568661 144568961 -98095392 - AluSg SINE Alu -12 298 1 571 259 95 21 chr1 144569015 144569258 -98095095 - MIR SINE MIR 0 262 2 2301 94 0 0 chr1 144569642 144569940 -98094413 + AluSx SINE Alu 1 298 -14 2053 163 43 40 chr1 144570049 144570596 -98093757 - MLT2A2 LTR ERVL 0 554 2 2345 79 3 0 chr1 144570764 144571069 -98093284 + AluSp SINE Alu 1 306 -7 599 173 9 36 chr1 144571108 144571218 -98093135 + FLAM_A SINE Alu 21 127 -15 258 271 12 35 chr1 144571637 144571722 -98092631 - MLT1I LTR MaLR -256 153 71 453 327 79 15 chr1 144572113 144572315 -98092038 + MIR SINE MIR 34 248 -14 192 351 99 0 chr1 144572377 144572528 -98091825 - L2 LINE L2 -215 3098 2933 537 238 8 0 chr1 144572675 144572797 -98091556 - FLAM_A SINE Alu -10 123 1 1994 116 34 0 chr1 144572916 144573209 -98091144 + AluSq SINE Alu 1 303 -10 2127 114 0 0 chr1 144573354 144573652 -98090701 + AluSx SINE Alu 1 298 -14 1726 152 7 7 chr1 144573673 144573962 -98090391 + AluJo SINE Alu 1 289 -23 189 0 0 0 chr1 144573962 144573983 -98090370 + (GA)n Simple_repeat Simple_repeat 2 22 0 2349 42 0 42 chr1 144574716 144575025 -98089328 + AluY SINE Alu 3 298 -13 2145 106 0 7 chr1 144575099 144575401 -98088952 + AluSq SINE Alu 1 300 -13 229 274 88 44 chr1 144575619 144575732 -98088621 - MIR SINE MIR -62 146 29 349 217 39 9 chr1 144575912 144576061 -98088292 - MER58B DNA MER1_type -3 338 37 2035 112 0 0 chr1 144576539 144576826 -98087527 + AluSx SINE Alu 1 287 -25 2134 102 3 10 chr1 144576838 144577133 -98087220 + AluY SINE Alu 1 293 -18 411 38 0 0 chr1 144577133 144577186 -98087167 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1529 167 27 44 chr1 144577545 144577669 -98086684 + AluJo SINE Alu 1 126 -176 2151 123 0 0 chr1 144577669 144577971 -98086382 - AluSq SINE Alu -11 302 1 2012 122 0 3 chr1 144577978 144578282 -98086071 - AluSg1 SINE Alu -6 303 1 1529 167 27 44 chr1 144578282 144578443 -98085910 + AluJo SINE Alu 132 289 -13 1869 156 7 7 chr1 144578480 144578788 -98085565 + AluJo SINE Alu 3 310 -2 2171 97 3 25 chr1 144578796 144579116 -98085237 + AluSp SINE Alu 1 313 0 2264 82 0 3 chr1 144579192 144579485 -98084868 + AluSc SINE Alu 1 292 -17 1904 124 18 0 chr1 144579490 144579773 -98084580 + AluSq SINE Alu 1 288 -25 237 132 0 0 chr1 144579775 144579813 -98084540 + (TA)n Simple_repeat Simple_repeat 2 39 0 227 73 0 0 chr1 144579816 144579857 -98084496 - LTR66 LTR ERVL -172 438 398 1728 139 13 27 chr1 144580557 144580858 -98083495 + AluJo SINE Alu 1 297 -15 671 204 8 23 chr1 144580870 144581002 -98083351 + FLAM_C SINE Alu 1 130 -3 382 195 0 0 chr1 144581002 144581079 -98083274 + LTR30 LTR ERV1 548 624 -98 794 121 7 43 chr1 144581120 144581260 -98083093 + FRAM SINE Alu 32 166 -10 262 273 0 0 chr1 144581520 144581575 -98082778 - MER66B LTR ERV1 -137 349 295 842 208 17 64 chr1 144581579 144581815 -98082538 - AluJb SINE Alu -3 309 85 378 130 19 0 chr1 144581815 144581869 -98082484 - AluSp/q SINE Alu -53 250 196 2259 103 0 0 chr1 144581990 144582290 -98082063 + AluSx SINE Alu 1 300 -12 2215 100 3 0 chr1 144582587 144582888 -98081465 + AluSg SINE Alu 1 302 -8 2271 80 10 0 chr1 144582908 144583210 -98081143 + AluSp SINE Alu 1 305 -8 1726 129 68 4 chr1 144583814 144584094 -98080259 + AluSx SINE Alu 1 298 -14 1231 97 0 27 chr1 144584334 144584519 -98079834 - AluSq SINE Alu 0 313 134 2273 78 0 13 chr1 144584519 144584826 -98079527 - AluY SINE Alu -8 303 1 736 158 9 0 chr1 144584923 144585037 -98079316 + FLAM_C SINE Alu 1 115 -18 185 0 40 0 chr1 144585038 144585063 -98079290 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2879 13 0 0 chr1 144585185 144585491 -98078862 - AluYa5 SINE Alu -5 306 1 1767 160 10 30 chr1 144585518 144585818 -98078535 + AluJb SINE Alu 1 294 -18 1592 183 18 0 chr1 144586057 144586342 -98078011 + AluJb SINE Alu 1 290 -22 2484 89 0 0 chr1 144587919 144588222 -98076131 - AluSx SINE Alu -9 303 1 2463 51 14 0 chr1 144588401 144588696 -98075657 + AluY SINE Alu 1 299 -12 384 212 0 0 chr1 144589258 144589324 -98075029 + AluJ/FLAM SINE Alu 1 66 -236 1699 163 21 14 chr1 144589338 144589626 -98074727 - AluJo SINE Alu -22 290 1 496 138 0 12 chr1 144590036 144590116 -98074237 + AluJ/FLAM SINE Alu 2 80 -232 679 173 0 0 chr1 144590287 144590397 -98073956 + FLAM_C SINE Alu 2 111 -32 26 50 0 0 chr1 144590405 144590445 -98073908 + AT_rich Low_complexity Low_complexity 1 40 0 2140 105 0 10 chr1 144590483 144590778 -98073575 + AluY SINE Alu 16 307 -4 687 118 84 124 chr1 144590782 144590960 -98073393 + FRAM SINE Alu 1 171 -5 732 274 33 5 chr1 144590974 144591189 -98073164 + HAL1 LINE L1 1744 1964 -543 294 211 66 0 chr1 144591194 144591270 -98073083 + HAL1 LINE L1 2055 2135 -372 2364 76 10 0 chr1 144591281 144591571 -98072782 - AluY SINE Alu -18 293 1 941 171 18 6 chr1 144591620 144591784 -98072569 + FRAM SINE Alu 1 166 0 270 0 0 0 chr1 144592000 144592030 -98072323 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 879 156 7 0 chr1 144592340 144592475 -98071878 + FRAM SINE Alu 38 173 -3 286 303 20 10 chr1 144593106 144593205 -98071148 + MER5B DNA MER1_type 1 100 -78 2048 145 0 0 chr1 144593259 144593556 -98070797 + AluSx SINE Alu 1 297 -15 2168 133 3 0 chr1 144593558 144593867 -98070486 + AluSx SINE Alu 1 310 -2 1534 143 27 48 chr1 144594477 144594771 -98069582 + AluJo SINE Alu 1 288 -24 1885 72 13 0 chr1 144594780 144595016 -98069337 + AluSp SINE Alu 1 239 -74 306 303 0 20 chr1 144595028 144595127 -98069226 + L1MC4 LINE L1 6611 6707 -1335 502 224 13 0 chr1 144595138 144595290 -98069063 + (TA)n Simple_repeat Simple_repeat 2 155 0 1445 196 22 41 chr1 144595307 144595623 -98068730 + AluJb SINE Alu 1 310 -2 2201 107 10 0 chr1 144595969 144596259 -98068094 + AluSg SINE Alu 3 295 -15 383 206 168 0 chr1 144597087 144597194 -98067159 - L1MC4 LINE L1 -4 8038 7914 2362 105 0 3 chr1 144597204 144597510 -98066843 - AluSx SINE Alu -7 305 1 3612 210 174 55 chr1 144597511 144597722 -98066631 - L1MC4 LINE L1 -178 7864 7679 2405 71 0 3 chr1 144597722 144598017 -98066336 + AluSg SINE Alu 1 294 -16 3612 210 174 55 chr1 144598017 144598536 -98065817 - L1MC4 LINE L1 -363 7679 7223 2314 119 0 0 chr1 144598536 144598839 -98065514 + AluSg SINE Alu 1 303 -7 3612 210 174 55 chr1 144598839 144598851 -98065502 - L1MC4 LINE L1 -819 7223 7214 1810 171 0 10 chr1 144598851 144599149 -98065204 + AluJb SINE Alu 1 295 -17 3612 210 174 55 chr1 144599149 144599197 -98065156 - L1MC4 LINE L1 -828 7214 7173 895 221 136 16 chr1 144599197 144599455 -98064898 - AluJo SINE Alu -12 290 2 3612 210 174 55 chr1 144599455 144599957 -98064396 - L1MC4 LINE L1 -869 7173 6415 1740 97 57 67 chr1 144599962 144600262 -98064091 + AluSg SINE Alu 1 297 -13 2370 95 0 3 chr1 144600273 144600578 -98063775 + AluSx SINE Alu 1 304 -8 306 244 30 44 chr1 144600684 144600819 -98063534 - L1MC4 LINE L1 -1878 5930 5798 664 160 76 38 chr1 144600857 144600988 -98063365 - MER3 DNA MER1_type -73 136 1 2253 124 0 0 chr1 144601111 144601417 -98062936 + AluSx SINE Alu 1 306 -6 988 167 73 73 chr1 144601621 144601752 -98062601 - MER46A DNA MER2_type -2498 233 100 1958 157 10 0 chr1 144601752 144602051 -98062302 + AluJb SINE Alu 1 302 -10 988 167 73 73 chr1 144602051 144602152 -98062201 - MER46A DNA MER2_type -2630 101 1 1203 136 0 6 chr1 144602286 144602462 -98061891 + AluJb SINE Alu 126 300 -12 2236 106 0 0 chr1 144603317 144603609 -98060744 + AluSx SINE Alu 1 292 -20 1759 181 0 3 chr1 144603779 144604071 -98060282 + AluJo SINE Alu 1 291 -21 273 231 8 107 chr1 144604535 144604622 -98059731 - L2 LINE L2 -1232 2082 2009 1531 148 20 61 chr1 144604622 144604919 -98059434 + AluJo SINE Alu 5 289 -23 273 231 8 107 chr1 144604919 144604952 -98059401 - L2 LINE L2 -1305 2009 1974 221 320 141 0 chr1 144605160 144605238 -98059115 + L2 LINE L2 3116 3204 -68 300 338 97 19 chr1 144605448 144605655 -98058698 - L3 LINE CR1 -3 1574 1352 600 14 0 0 chr1 144605742 144605811 -98058542 + (TTATG)n Simple_repeat Simple_repeat 2 70 0 2310 87 0 7 chr1 144605811 144606100 -98058253 - AluSq SINE Alu -26 287 1 25 65 0 0 chr1 144606338 144606384 -98057969 + AT_rich Low_complexity Low_complexity 1 46 0 2365 86 0 0 chr1 144606413 144606704 -98057649 - AluSq SINE Alu -22 291 1 2372 73 0 0 chr1 144606732 144607020 -98057333 - AluSc SINE Alu -21 288 1 1103 141 188 76 chr1 144607051 144607144 -98057209 - MER2 DNA MER2_type -6 339 258 1698 155 3 60 chr1 144607144 144607286 -98057067 + AluJo SINE Alu 3 119 -193 2340 82 0 3 chr1 144607286 144607579 -98056774 + AluSg SINE Alu 1 292 -18 1698 155 3 60 chr1 144607579 144607752 -98056601 + AluJo SINE Alu 119 300 -12 1103 141 188 76 chr1 144607752 144607962 -98056391 - MER2 DNA MER2_type -87 258 2 1181 144 0 53 chr1 144608114 144608322 -98056031 - AluSg SINE Alu -100 210 14 2392 171 65 93 chr1 144608397 144608580 -98055773 - L1ME2 LINE L1 -13 6151 5964 2420 68 20 0 chr1 144608580 144608876 -98055477 - AluY SINE Alu -9 302 1 2392 171 65 93 chr1 144608876 144609388 -98054965 - L1ME2 LINE L1 -200 5964 5476 2171 119 0 3 chr1 144609392 144609694 -98054659 + AluSx SINE Alu 1 301 -11 1036 171 0 0 chr1 144609714 144609889 -98054464 - AluSg/x SINE Alu -3 309 135 180 0 0 0 chr1 144609889 144609909 -98054444 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2103 116 0 3 chr1 144609909 144610194 -98054159 - AluSx SINE Alu -28 284 1 521 302 111 66 chr1 144610375 144610476 -98053877 - L3 LINE CR1 -634 943 848 2369 55 42 7 chr1 144610476 144610765 -98053588 + AluY SINE Alu 2 300 -11 521 302 111 66 chr1 144610765 144610778 -98053575 - L3 LINE CR1 -729 848 837 842 130 0 15 chr1 144610778 144610909 -98053444 + FLAM_C SINE Alu 1 129 -4 521 302 111 66 chr1 144610909 144611127 -98053226 - L3 LINE CR1 -740 837 595 1206 181 28 5 chr1 144611133 144611348 -98053005 - AluJb SINE Alu -8 304 85 244 244 6 147 chr1 144611433 144611560 -98052793 + L2 LINE L2 3180 3284 -29 2364 84 0 0 chr1 144611560 144611874 -98052479 - AluY SINE Alu 0 314 1 244 244 6 147 chr1 144611874 144611901 -98052452 + L2 LINE L2 3284 3313 0 1644 156 35 21 chr1 144611908 144612196 -98052157 + AluSx SINE Alu 1 292 -20 187 241 37 0 chr1 144612208 144612262 -98052091 - L3 LINE CR1 -1115 462 407 1317 204 57 7 chr1 144612579 144612859 -98051494 - AluJb SINE Alu -18 294 1 2269 101 13 22 chr1 144613011 144613327 -98051026 + AluSq SINE Alu 1 313 0 1878 114 52 0 chr1 144614731 144615031 -98049322 + AluSx SINE Alu 1 314 0 1484 188 133 3 chr1 144615099 144615407 -98048946 - MER7A DNA MER2_type 0 346 1 2166 118 3 0 chr1 144615634 144615921 -98048432 + AluSx SINE Alu 1 288 -24 2149 116 0 0 chr1 144615929 144616238 -98048115 + AluSg SINE Alu 1 309 0 2133 119 0 10 chr1 144616241 144616564 -98047789 + AluSq SINE Alu 4 313 0 1308 103 0 6 chr1 144617055 144617265 -98047088 - AluSg/x SINE Alu 0 320 112 1525 110 57 80 chr1 144617366 144617666 -98046687 + AluSg SINE Alu 5 297 -13 2340 100 0 3 chr1 144617677 144617986 -98046367 + AluSq SINE Alu 1 308 -5 252 242 83 50 chr1 144617986 144618047 -98046306 - L1MC4a LINE L1 -1572 6236 6178 2101 100 0 66 chr1 144618047 144618222 -98046131 - AluSx SINE Alu -4 308 162 2329 97 7 0 chr1 144618222 144618522 -98045831 - AluSg SINE Alu -8 302 1 2101 100 0 66 chr1 144618522 144618665 -98045688 - AluSx SINE Alu -150 162 11 252 242 83 50 chr1 144618665 144618723 -98045630 - L1MC4a LINE L1 -1630 6178 6113 201 74 0 0 chr1 144618738 144618765 -98045588 + (TG)n Simple_repeat Simple_repeat 2 28 0 1597 171 24 27 chr1 144618802 144619100 -98045253 - AluJb SINE Alu -15 297 1 727 162 15 37 chr1 144620028 144620164 -98044189 + FLAM_C SINE Alu 1 133 0 2076 131 0 0 chr1 144621073 144621395 -98042958 + AluSx SINE Alu 1 322 0 303 287 10 50 chr1 144621397 144621498 -98042855 - MER2 DNA MER2_type -246 99 3 270 81 0 0 chr1 144621592 144621602 -98042751 + (TG)n Simple_repeat Simple_repeat 1 10 -336 2312 93 0 0 chr1 144621602 144621893 -98042460 + AluSx SINE Alu 1 291 -21 270 81 0 0 chr1 144621893 144621901 -98042452 + (TG)n Simple_repeat Simple_repeat 9 346 0 270 81 0 0 chr1 144621901 144621938 -98042415 + (TG)n Simple_repeat Simple_repeat 2 38 0 264 130 65 0 chr1 144622157 144622249 -98042104 + (TA)n Simple_repeat Simple_repeat 1 98 0 1026 207 5 5 chr1 144622249 144622452 -98041901 - AluJo SINE Alu -25 287 85 598 198 40 85 chr1 144622497 144622546 -98041807 + L1M4 LINE L1 4419 4469 -1677 2515 67 0 0 chr1 144622546 144622844 -98041509 - AluY SINE Alu -13 298 1 598 198 40 85 chr1 144622844 144623016 -98041337 + L1M4 LINE L1 4469 4630 -1516 1918 168 10 0 chr1 144623016 144623319 -98041034 + AluJb SINE Alu 1 306 -6 598 198 40 85 chr1 144623319 144623343 -98041010 + L1M4 LINE L1 4630 4654 -1492 1373 176 58 23 chr1 144623357 144623618 -98040735 - AluJb SINE Alu -26 286 17 2136 106 10 7 chr1 144623734 144624026 -98040327 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr1 144624277 144624305 -98040048 + AT_rich Low_complexity Low_complexity 1 28 0 292 138 0 163 chr1 144624349 144624407 -98039946 + Tigger2 DNA MER2_type 3 46 -2672 1929 133 18 0 chr1 144624407 144624692 -98039661 - AluSx SINE Alu -22 290 1 292 138 0 163 chr1 144624692 144624713 -98039640 + Tigger2 DNA MER2_type 46 69 -2649 286 183 0 17 chr1 144624697 144624757 -98039596 + Tigger2 DNA MER2_type 2267 2325 -393 * 704 279 30 13 chr1 144624764 144625065 -98039288 + L1M4 LINE L1 2664 2969 -3177 1034 156 0 18 chr1 144625094 144625229 -98039124 + AluJb SINE Alu 1 134 -178 2319 105 3 7 chr1 144625229 144625535 -98038818 + AluSx SINE Alu 1 305 -7 1034 156 0 18 chr1 144625535 144625566 -98038787 + AluJb SINE Alu 134 164 -148 1438 203 7 23 chr1 144625801 144626102 -98038251 + AluJo SINE Alu 1 296 -16 787 237 0 0 chr1 144626124 144626276 -98038077 + AluJb SINE Alu 149 300 -12 239 277 43 78 chr1 144626553 144626694 -98037659 + L2 LINE L2 1481 1616 -1698 1984 121 10 38 chr1 144626805 144627119 -98037234 - AluSx SINE Alu -7 305 1 456 165 0 0 chr1 144627139 144627230 -98037123 + (TG)n Simple_repeat Simple_repeat 2 92 0 255 62 0 0 chr1 144627231 144627263 -98037090 - AluSp/q SINE Alu -18 285 254 2081 109 7 0 chr1 144627311 144627594 -98036759 - AluSq SINE Alu -28 285 1 1579 195 19 16 chr1 144627612 144627919 -98036434 - AluJo SINE Alu -4 308 1 1113 223 15 49 chr1 144627934 144628102 -98036251 - AluJo SINE Alu -14 298 126 180 0 0 0 chr1 144628102 144628122 -98036231 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2056 154 0 0 chr1 144628124 144628417 -98035936 - AluSx SINE Alu -18 294 2 1113 223 15 49 chr1 144628417 144628510 -98035843 - AluJo SINE Alu -187 125 43 384 298 6 37 chr1 144628536 144628697 -98035656 - HAL1 LINE L1 -213 2294 2139 1752 75 0 0 chr1 144628715 144628927 -98035426 + AluY SINE Alu 1 212 -99 331 64 0 0 chr1 144629036 144629083 -98035270 + Alu SINE Alu 254 300 -1 206 121 0 0 chr1 144629128 144629161 -98035192 + (T)n Simple_repeat Simple_repeat 1 33 0 1654 93 46 0 chr1 144629180 144629396 -98034957 - AluSx SINE Alu -82 230 5 477 202 30 0 chr1 144629478 144629577 -98034776 + L1MD2 LINE L1 6243 6344 -15 399 234 19 19 chr1 144629601 144629708 -98034645 - HAL1 LINE L1 -909 1598 1492 408 207 35 0 chr1 144629712 144629799 -98034554 - FRAM SINE Alu -3 163 74 817 145 8 0 chr1 144629824 144629955 -98034398 - FLAM_C SINE Alu -6 137 6 355 288 23 23 chr1 144629956 144630088 -98034265 - HAL1 LINE L1 -1015 1492 1361 2188 127 0 0 chr1 144630106 144630413 -98033940 - AluSg SINE Alu -2 308 2 2372 98 0 0 chr1 144630466 144630762 -98033591 - AluSc SINE Alu -13 296 1 1813 142 4 18 chr1 144630853 144631134 -98033219 - AluSx SINE Alu -35 277 1 341 268 102 47 chr1 144631173 144631300 -98033053 + L2 LINE L2 3139 3272 0 2014 144 0 41 chr1 144631325 144631644 -98032709 - AluSx SINE Alu -6 306 1 2455 58 0 3 chr1 144631897 144632189 -98032164 + AluY SINE Alu 1 291 -20 315 0 0 0 chr1 144632301 144632336 -98032017 + (TG)n Simple_repeat Simple_repeat 2 36 0 1143 156 83 5 chr1 144634255 144634460 -98029893 + MER51A LTR ERV1 398 618 -16 2168 237 38 8 chr1 144634623 144635099 -98029254 + MER51A-int LTR ERV1 22 511 -3774 837 210 41 82 chr1 144635414 144635526 -98028827 + MER51A-int LTR ERV1 554 669 -7147 2035 128 3 3 chr1 144635526 144635832 -98028521 + AluSq SINE Alu 1 306 -7 837 210 41 82 chr1 144635832 144635986 -98028367 + MER51A-int LTR ERV1 669 809 -7007 356 234 27 20 chr1 144635998 144636131 -98028222 + MER51A-int LTR ERV1 856 944 -4010 282 306 31 20 chr1 144636429 144636527 -98027826 + MER51A-int LTR ERV1 1804 1902 -5516 294 324 14 22 chr1 144637360 144637499 -98026854 + MER51A-int LTR ERV1 2662 2799 -4957 652 304 54 37 chr1 144637831 144638412 -98025941 + MER51A-int LTR ERV1 2885 3787 -1167 2303 311 54 47 chr1 144638480 144640028 -98024325 + MER51A-int LTR ERV1 4275 5751 -2005 2114 125 0 0 chr1 144640028 144640325 -98024028 - AluSx SINE Alu -15 297 1 2303 311 54 47 chr1 144640325 144640733 -98023620 + MER51A-int LTR ERV1 5751 6155 -1601 23 0 0 0 chr1 144640815 144640838 -98023515 + AT_rich Low_complexity Low_complexity 1 23 0 303 190 17 0 chr1 144640899 144640957 -98023396 + MER51A-int LTR ERV1 7487 7545 -271 333 138 25 62 chr1 144641107 144641187 -98023166 + MER51A-int LTR ERV1 6662 6738 -1661 1317 300 36 49 chr1 144641835 144642382 -98021971 + MER51A-int LTR ERV1 7394 7335 -481 2167 82 0 35 chr1 144642382 144642700 -98021653 - AluY SINE Alu 0 311 5 1317 300 36 49 chr1 144642700 144643177 -98021176 + MER51A-int LTR ERV1 7334 7816 0 263 83 0 0 chr1 144643177 144643213 -98021140 + MER51A LTR ERV1 1 36 -598 * 1540 149 149 44 chr1 144643211 144643553 -98020800 + MER51A LTR ERV1 257 634 0 2208 84 14 3 chr1 144644271 144644567 -98019786 + AluSp SINE Alu 1 299 -14 1914 150 0 16 chr1 144644578 144644891 -98019462 + AluSg SINE Alu 3 310 0 198 71 0 0 chr1 144645259 144645287 -98019066 + (GAA)n Simple_repeat Simple_repeat 1 28 0 2351 43 40 7 chr1 144645621 144645922 -98018431 - AluY SINE Alu 0 311 1 1820 110 0 28 chr1 144645927 144646209 -98018144 - AluSq SINE Alu -39 274 1 1139 105 0 0 chr1 144646271 144646460 -98017893 - AluSg/x SINE Alu 0 321 133 180 0 0 0 chr1 144646460 144646480 -98017873 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2013 102 0 7 chr1 144646480 144646764 -98017589 - AluSq SINE Alu -31 282 1 4728 134 30 46 chr1 144647547 144648354 -98015999 + LTR25 LTR ERV1 1 794 0 7970 186 47 17 chr1 144648371 144648850 -98015503 + LTR25-int LTR ERV1 1 464 -6532 2074 127 0 10 chr1 144648850 144649022 -98015331 - AluSx SINE Alu -7 305 136 2043 125 3 0 chr1 144649022 144649318 -98015035 - AluSp SINE Alu -16 297 1 2074 127 0 10 chr1 144649318 144649453 -98014900 - AluSx SINE Alu -176 136 1 7970 186 47 17 chr1 144649453 144650602 -98013751 + LTR25-int LTR ERV1 464 1678 -5318 4716 67 13 15 chr1 144650602 144651640 -98012713 + MER11A LTR ERVK 1 1266 0 15740 158 55 53 chr1 144651640 144652442 -98011911 + LTR25-int LTR ERV1 1673 2472 -4524 2184 89 17 0 chr1 144652442 144652733 -98011620 + AluSp SINE Alu 1 296 -17 15740 158 55 53 chr1 144652733 144653556 -98010797 + LTR25-int LTR ERV1 2472 3292 -3704 2424 75 0 0 chr1 144653556 144653863 -98010490 - AluY SINE Alu -4 307 1 15740 158 55 53 chr1 144653863 144655424 -98008929 + LTR25-int LTR ERV1 3292 4871 -2125 2270 99 0 3 chr1 144655424 144655737 -98008616 + AluSp SINE Alu 1 312 -1 15740 158 55 53 chr1 144655737 144655851 -98008502 + LTR25-int LTR ERV1 4871 4983 -2013 2374 62 0 0 chr1 144655862 144656154 -98008199 + AluY SINE Alu 1 292 -19 680 188 0 103 chr1 144656160 144656374 -98007979 + LTR12 LTR ERV1 181 452 -262 2139 169 18 66 chr1 144656394 144656531 -98007822 + HUERS-P3b LTR ERV1 1 143 -7277 2184 97 0 7 chr1 144656531 144656830 -98007523 + AluY SINE Alu 1 297 -14 2139 169 18 66 chr1 144656830 144657255 -98007098 + HUERS-P3b LTR ERV1 143 567 -6853 1015 247 4 25 chr1 144657737 144657976 -98006377 + HUERS-P3b LTR ERV1 1655 1888 -6738 7979 55 1 0 chr1 144657976 144658941 -98005412 + LTR5 LTR ERVK 1 966 -3 65181 10 0 0 chr1 144658944 144666093 -97998260 + HERVK LTR ERVK 1 7148 -95 445 63 11 168 chr1 144666093 144666188 -97998165 + SVA Other Other 857 936 -450 7979 55 1 0 chr1 144666188 144667153 -97997200 + LTR5 LTR ERVK 1 966 -3 13666 197 6 8 chr1 144667157 144669355 -97994998 + HUERS-P3b LTR ERV1 1884 4079 -4547 3762 107 2 4 chr1 144669355 144669867 -97994486 - MER9 LTR ERVK 0 511 1 13666 197 6 8 chr1 144669867 144670048 -97994305 + HUERS-P3b LTR ERV1 4079 4259 -4367 3270 230 12 45 chr1 144670038 144670148 -97994205 + HUERS-P3b LTR ERV1 504 616 -8010 * 4069 99 12 60 chr1 144670148 144670786 -97993567 + LTR14B LTR ERVK 1 608 0 3270 230 12 45 chr1 144670786 144671460 -97992893 + HUERS-P3b LTR ERV1 616 8626 0 503 205 68 17 chr1 144671666 144671783 -97992570 + LTR12 LTR ERV1 238 360 -354 1632 141 19 99 chr1 144671803 144672037 -97992316 + HUERS-P3b LTR ERV1 4848 5044 -2374 2113 112 3 0 chr1 144672037 144672340 -97992013 + AluSp SINE Alu 1 304 -9 1632 141 19 99 chr1 144672340 144672468 -97991885 + HUERS-P3b LTR ERV1 5044 5181 -2237 1986 129 17 0 chr1 144672493 144672787 -97991566 + AluSx SINE Alu 1 299 -13 827 153 47 41 chr1 144672792 144672930 -97991423 + AluSp SINE Alu 132 273 -40 1653 123 0 0 chr1 144672930 144673166 -97991187 + AluSx SINE Alu 1 236 -76 827 153 47 41 chr1 144673166 144673197 -97991156 + AluSp SINE Alu 273 302 -11 2242 112 0 0 chr1 144673199 144673512 -97990841 + AluSq SINE Alu 1 313 0 1505 188 0 7 chr1 144673529 144673811 -97990542 + AluJo SINE Alu 1 280 -32 602 155 10 0 chr1 144673849 144673946 -97990407 + AluJ/FLAM SINE Alu 2 99 -213 1073 125 10 67 chr1 144673948 144674086 -97990267 - AluJo SINE Alu -106 206 82 2198 93 0 10 chr1 144674086 144674387 -97989966 - AluSg SINE Alu -12 298 1 1073 125 10 67 chr1 144674387 144674456 -97989897 - AluJo SINE Alu -230 82 11 1891 97 41 0 chr1 144675331 144675598 -97988755 + AluSp SINE Alu 1 278 -35 261 75 0 0 chr1 144675601 144675641 -97988712 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 510 183 0 70 chr1 144675681 144675796 -97988557 + FAM SINE Alu 36 142 -43 1843 139 17 3 chr1 144675824 144676119 -97988234 - AluSx SINE Alu -13 299 1 830 169 0 0 chr1 144676122 144676252 -97988101 - FLAM_A SINE Alu 0 133 4 2064 95 7 29 chr1 144676706 144677012 -97987341 + AluSq SINE Alu 1 299 -14 665 186 57 8 chr1 144677194 144677318 -97987035 - AluJb SINE Alu -181 131 2 2141 92 17 0 chr1 144678462 144678754 -97985599 - AluSx SINE Alu -15 297 1 236 292 111 0 chr1 144678754 144678826 -97985527 + MIR SINE MIR 58 137 -125 362 208 183 107 chr1 144684087 144684363 -97979990 - L1ME3A LINE L1 -196 5968 5681 1484 148 50 66 chr1 144684383 144684700 -97979653 + AluJo SINE Alu 3 312 0 2078 122 7 0 chr1 144684703 144684999 -97979354 + AluSx SINE Alu 1 298 -14 1751 167 0 31 chr1 144685042 144685360 -97978993 - AluJb SINE Alu -4 308 1 472 246 95 23 chr1 144685364 144685628 -97978725 - L1M4 LINE L1 -2098 4048 3766 1051 100 0 0 chr1 144685639 144685769 -97978584 + AluSq SINE Alu 6 135 -177 2164 95 18 0 chr1 144685769 144686043 -97978310 - AluSg SINE Alu -31 279 1 25 0 0 0 chr1 144686043 144686068 -97978285 + AT_rich Low_complexity Low_complexity 1 25 0 822 186 10 50 chr1 144686068 144686267 -97978086 - AluJb SINE Alu -2 310 120 1159 130 11 0 chr1 144686386 144686563 -97977790 + AluSq SINE Alu 121 299 -14 683 186 57 8 chr1 144686745 144686869 -97977484 - AluJb SINE Alu -181 131 2 2284 92 17 0 chr1 144688013 144688305 -97976048 - AluSx SINE Alu -15 297 1 231 292 111 0 chr1 144688305 144688377 -97975976 + MIR SINE MIR 58 137 -125 461 214 145 73 chr1 144693670 144693825 -97970528 - L1ME3A LINE L1 -239 5931 5789 2638 40 0 10 chr1 144693825 144694128 -97970225 + AluY SINE Alu 1 300 -11 243 0 0 0 chr1 144694128 144694155 -97970198 + (TA)n Simple_repeat Simple_repeat 2 28 0 461 214 145 73 chr1 144694155 144694232 -97970121 - L1ME3A LINE L1 -380 5790 5681 2221 99 6 10 chr1 144694246 144694558 -97969795 + AluSq SINE Alu 1 311 -2 2492 64 0 10 chr1 144694571 144694883 -97969470 + AluY SINE Alu 1 309 -2 1159 187 43 90 chr1 144694893 144695193 -97969160 + AluJo SINE Alu 1 286 -16 283 194 78 29 chr1 144695198 144695301 -97969052 + L1MC4 LINE L1 7933 8040 -2 1748 157 27 10 chr1 144695358 144695652 -97968701 - AluJb SINE Alu -13 299 1 895 271 48 92 chr1 144695656 144695899 -97968454 - L1M4 LINE L1 -2098 4048 3796 2196 104 3 3 chr1 144695899 144696197 -97968156 + AluSg SINE Alu 1 298 -12 895 271 48 92 chr1 144696197 144696241 -97968112 - L1M4 LINE L1 -2350 3796 3752 2187 113 3 0 chr1 144696241 144696541 -97967812 + AluSg SINE Alu 1 301 -9 895 271 48 92 chr1 144696541 144696552 -97967801 - L1M4 LINE L1 -2394 3752 3742 855 164 0 0 chr1 144696552 144696680 -97967673 + AluJo/FLAM SINE Alu 1 128 -174 2234 123 7 0 chr1 144696680 144696990 -97967363 + AluSx SINE Alu 1 312 0 895 271 48 92 chr1 144696990 144697013 -97967340 - L1M4 LINE L1 -2403 3743 3721 1884 130 6 80 chr1 144697013 144697337 -97967016 + AluSx SINE Alu 1 300 -12 895 271 48 92 chr1 144697337 144697576 -97966777 - L1M4 LINE L1 -2425 3721 3526 1037 187 146 19 chr1 144697576 144697843 -97966510 - AluJo SINE Alu -1 301 1 895 271 48 92 chr1 144697843 144698056 -97966297 - L1M4 LINE L1 -2620 3526 3305 2148 120 0 23 chr1 144698058 144698394 -97965959 - AluSx SINE Alu 0 312 1 26 30 0 0 chr1 144698451 144698484 -97965869 + AT_rich Low_complexity Low_complexity 1 33 0 2016 153 3 0 chr1 144698484 144698779 -97965574 - AluJb SINE Alu -16 296 1 653 282 30 13 chr1 144698812 144699113 -97965240 - L1M4 LINE L1 -3177 2969 2664 267 183 0 17 chr1 144699120 144699180 -97965173 - Tigger2 DNA MER2_type -393 2325 2267 * 351 179 0 15 chr1 144699164 144699231 -97965122 - Tigger2 DNA MER2_type -2649 69 4 21 36 0 0 chr1 144699273 144699301 -97965052 + AT_rich Low_complexity Low_complexity 1 28 0 2323 104 0 0 chr1 144699499 144699797 -97964556 - AluSx SINE Alu -14 298 1 2073 108 9 94 chr1 144699948 144700290 -97964063 - AluSq SINE Alu 0 313 1 326 303 20 10 chr1 144700344 144700443 -97963910 - MER5B DNA MER1_type -78 100 1 2182 99 11 0 chr1 144700858 144701176 -97963177 - AluSp SINE Alu 0 321 1 2546 78 0 0 chr1 144701319 144701628 -97962725 + AluY SINE Alu 1 309 -2 918 163 0 0 chr1 144701723 144701864 -97962489 - FRAM SINE Alu -6 170 30 2280 117 0 10 chr1 144701936 144702243 -97962110 + AluSx SINE Alu 1 304 -8 959 114 8 0 chr1 144702254 144702386 -97961967 + AluSq/x SINE Alu 1 133 -180 1794 86 0 0 chr1 144702397 144702619 -97961734 + AluY SINE Alu 1 222 -89 1607 111 0 0 chr1 144702619 144702827 -97961526 + AluSg/x SINE Alu 95 302 -10 8776 41 1 1 chr1 144702867 144703836 -97960517 + LTR5 LTR ERVK 1 969 0 964 171 17 34 chr1 144704171 144704347 -97960006 - AluJb SINE Alu -6 306 134 1961 168 7 0 chr1 144704627 144704931 -97959422 - AluSx SINE Alu -6 306 1 2198 113 10 0 chr1 144704958 144705251 -97959102 + AluSp SINE Alu 1 296 -17 2283 109 0 3 chr1 144705255 144705558 -97958795 + AluSx SINE Alu 1 302 -10 2382 92 0 0 chr1 144705563 144705857 -97958496 + AluSx SINE Alu 1 294 -18 1986 125 3 3 chr1 144705893 144706180 -97958173 - AluSq SINE Alu -20 293 7 1771 176 0 14 chr1 144706248 144706544 -97957809 - AluJb SINE Alu -12 300 9 1502 187 39 18 chr1 144706587 144706870 -97957483 - AluJo SINE Alu -23 289 1 1915 142 54 24 chr1 144707596 144707891 -97956462 + AluSc SINE Alu 1 304 -5 2380 91 0 3 chr1 144707895 144708203 -97956150 + AluY SINE Alu 1 307 -4 2098 134 0 7 chr1 144708220 144708519 -97955834 - AluSx SINE Alu -15 297 1 616 227 31 0 chr1 144708623 144708751 -97955602 + FLAM_A SINE Alu 1 132 -1 2115 115 17 0 chr1 144708940 144709253 -97955100 - AluSx SINE Alu 0 318 1 232 307 40 0 chr1 144709283 144709358 -97954995 + L2 LINE L2 3009 3086 -227 2506 58 0 3 chr1 144709392 144709686 -97954667 - AluY SINE Alu -18 293 1 498 348 54 18 chr1 144709734 144709955 -97954398 - MIR SINE MIR -14 248 20 2270 116 0 7 chr1 144710159 144710462 -97953891 + AluSx SINE Alu 1 301 -11 1942 118 31 3 chr1 144710526 144710813 -97953540 + AluSq SINE Alu 1 295 -18 608 202 8 32 chr1 144711409 144711533 -97952820 - FLAM_A SINE Alu -4 138 18 2513 58 7 0 chr1 144711569 144711863 -97952490 - AluSp SINE Alu -17 296 1 1860 168 45 39 chr1 144713423 144713959 -97950394 + MLT2A2 LTR ERVL 11 554 0 2468 88 0 0 chr1 144714062 144714357 -97949996 - AluSx SINE Alu -17 295 1 595 259 95 21 chr1 144714739 144714982 -97949371 + MIR SINE MIR 2 262 0 215 240 0 0 chr1 144715009 144715059 -97949294 + L2 LINE L2 3263 3312 -1 2312 80 3 10 chr1 144715146 144715445 -97948908 - AluSx SINE Alu -11 301 5 2759 29 0 3 chr1 144715604 144715911 -97948442 - AluY SINE Alu -5 306 1 2181 109 7 0 chr1 144715911 144716213 -97948140 - AluSx SINE Alu -8 304 1 1865 181 7 0 chr1 144716325 144716623 -97947730 + AluSx SINE Alu 1 300 -12 512 200 140 90 chr1 144716715 144717026 -97947327 + L1P5 LINE L1 5163 5489 -665 1057 83 0 0 chr1 144717030 144717163 -97947190 + AluSq/x SINE Alu 1 133 -179 339 253 105 28 chr1 144717199 144717405 -97946948 + L1ME2 LINE L1 5667 5880 -282 2593 68 0 0 chr1 144717820 144718131 -97946222 - AluY SINE Alu 0 311 1 392 209 113 61 chr1 144718182 144718297 -97946056 - L2 LINE L2 -3 3269 3149 1450 196 87 4 chr1 144718312 144718427 -97945926 + AluJo SINE Alu 1 105 -207 272 47 0 23 chr1 144718427 144718470 -97945883 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 1450 196 87 4 chr1 144718470 144718620 -97945733 + AluJo SINE Alu 105 288 -24 1725 166 22 32 chr1 144718674 144718987 -97945366 - AluJo SINE Alu -2 310 1 1854 155 35 0 chr1 144718992 144719276 -97945077 - AluJb SINE Alu -8 304 11 1941 134 17 3 chr1 144719824 144720115 -97944238 - AluJo SINE Alu -17 295 1 1384 179 72 55 chr1 144720200 144720507 -97943846 + AluJo SINE Alu 1 312 0 2297 86 3 7 chr1 144720614 144720915 -97943438 + AluSg1 SINE Alu 1 300 -9 1137 61 8 0 chr1 144721182 144721314 -97943039 + AluY SINE Alu 1 133 -178 408 98 0 0 chr1 144721316 144721367 -97942986 + AluSp/q SINE Alu 200 250 -63 1314 130 24 5 chr1 144721367 144721574 -97942779 + AluSg/x SINE Alu 83 293 -17 1841 144 33 23 chr1 144721672 144721977 -97942376 + AluSx SINE Alu 2 309 -3 766 165 8 15 chr1 144722108 144722241 -97942112 + FLAM_C SINE Alu 1 132 -1 2101 120 38 0 chr1 144722444 144722736 -97941617 - AluSx SINE Alu -9 303 1 1541 158 0 35 chr1 144722870 144723129 -97941224 - AluJb SINE Alu -62 250 1 565 227 31 8 chr1 144723131 144723259 -97941094 - AluJo/FLAM SINE Alu -169 133 3 2292 92 7 3 chr1 144723272 144723567 -97940786 - AluSx SINE Alu -5 307 12 220 299 191 36 chr1 144723671 144723865 -97940488 - MIR SINE MIR -38 224 1 * 502 254 109 45 chr1 144723865 144724019 -97940334 - L3 LINE CR1 -104 1473 1299 2112 104 3 21 chr1 144724019 144724347 -97940006 - AluSp SINE Alu 0 323 1 502 254 109 45 chr1 144724347 144724409 -97939944 - L3 LINE CR1 -278 1299 1242 2164 86 25 71 chr1 144724410 144724563 -97939790 + AluSx SINE Alu 1 133 -179 2648 46 0 0 chr1 144724563 144724865 -97939488 + AluY SINE Alu 1 302 -9 2164 86 25 71 chr1 144724865 144725036 -97939317 + AluSx SINE Alu 133 310 -2 1437 205 54 85 chr1 144725288 144725329 -97939024 + L1M4 LINE L1 4597 4638 -1540 1837 158 7 7 chr1 144725329 144725620 -97938733 + AluJb SINE Alu 1 291 -21 1437 205 54 85 chr1 144725620 144725985 -97938368 + L1M4 LINE L1 4638 5013 -1165 2640 58 0 0 chr1 144725985 144726293 -97938060 + AluY SINE Alu 1 308 -3 1437 205 54 85 chr1 144726293 144726330 -97938023 + L1M4 LINE L1 5013 5050 -1128 2548 71 0 3 chr1 144726330 144726641 -97937712 - AluSq SINE Alu -3 310 1 1437 205 54 85 chr1 144726641 144726748 -97937605 + L1M4 LINE L1 5050 5159 -1019 2262 79 14 0 chr1 144726748 144727061 -97937292 + AluSc SINE Alu 1 317 0 1437 205 54 85 chr1 144727061 144727251 -97937102 + L1M4 LINE L1 5159 5353 -825 2215 85 7 0 chr1 144727251 144727618 -97936735 + AluSx SINE Alu 1 369 0 1437 205 54 85 chr1 144727618 144727629 -97936724 + L1M4 LINE L1 5353 5363 -815 1798 182 0 7 chr1 144727629 144727937 -97936416 + AluJb SINE Alu 1 306 -6 1437 205 54 85 chr1 144727937 144728139 -97936214 + L1M4 LINE L1 5363 5529 -649 2294 106 13 0 chr1 144728206 144728508 -97935845 + AluSx SINE Alu 1 306 -6 1463 194 86 4 chr1 144728529 144728808 -97935545 + AluJo SINE Alu 1 302 -10 880 214 50 32 chr1 144728814 144728886 -97935467 - L1MD3 LINE L1 -33 7962 7893 180 77 0 0 chr1 144728886 144728912 -97935441 + (TA)n Simple_repeat Simple_repeat 1 26 0 880 214 50 32 chr1 144728912 144729014 -97935339 - L1MD3 LINE L1 -102 7893 7781 1690 180 42 3 chr1 144729014 144729298 -97935055 - AluJb SINE Alu -17 295 1 880 214 50 32 chr1 144729298 144729342 -97935011 - L1MD3 LINE L1 -214 7781 7739 321 277 50 50 chr1 144729345 144729504 -97934849 - L3 LINE CR1 -813 764 606 2304 115 0 0 chr1 144729513 144729817 -97934536 - AluSq SINE Alu -9 304 1 1306 178 5 9 chr1 144729870 144730083 -97934270 - AluJo SINE Alu -91 221 10 756 186 36 0 chr1 144730090 144730230 -97934123 + MER5B DNA MER1_type 34 178 0 2305 102 3 0 chr1 144730428 144730723 -97933630 + AluSp SINE Alu 6 301 -12 1594 98 5 5 chr1 144730725 144730940 -97933413 - AluSg1 SINE Alu -94 215 1 1050 120 42 69 chr1 144731042 144731259 -97933094 + MER20 DNA MER1_type 2 212 -7 2271 101 20 3 chr1 144731309 144731607 -97932746 - AluSx SINE Alu -9 303 1 811 171 18 55 chr1 144731805 144731936 -97932417 - AluJo SINE Alu -21 291 166 1336 128 34 51 chr1 144731936 144732170 -97932183 + MER30 DNA MER1_type 1 230 0 811 171 18 55 chr1 144732170 144732202 -97932151 - AluJo SINE Alu -146 166 134 640 173 55 16 chr1 144732202 144732329 -97932024 - AluJo SINE Alu -170 132 1 2331 201 92 9 chr1 144732494 144732585 -97931768 - MER44D DNA MER2_type -1882 705 623 192 40 0 0 chr1 144732585 144732610 -97931743 + (CA)n Simple_repeat Simple_repeat 2 26 0 2331 201 92 9 chr1 144732610 144733071 -97931282 - MER44D DNA MER2_type -1964 623 107 578 218 0 0 chr1 144733467 144733591 -97930762 + MER46A DNA MER2_type 91 214 -22 2236 116 0 3 chr1 144733636 144733938 -97930415 + AluSg SINE Alu 1 301 -9 2416 78 0 7 chr1 144733938 144734254 -97930099 + AluY SINE Alu 1 311 0 1885 130 4 11 chr1 144734257 144734533 -97929820 + AluSx SINE Alu 39 312 0 207 0 0 0 chr1 144734607 144734630 -97929723 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2277 117 0 3 chr1 144734635 144734935 -97929418 + AluSg SINE Alu 1 299 -11 2089 118 0 0 chr1 144734995 144735317 -97929036 + AluSg SINE Alu 1 280 -30 2051 117 3 10 chr1 144735320 144735619 -97928734 - AluSq SINE Alu -16 297 1 1756 139 3 70 chr1 144735638 144735773 -97928580 + AluSx SINE Alu 1 143 -169 2419 28 41 3 chr1 144735773 144736064 -97928289 + AluY SINE Alu 1 302 -9 1756 139 3 70 chr1 144736064 144736244 -97928109 + AluSx SINE Alu 143 295 -17 354 163 23 58 chr1 144736352 144736438 -97927915 + FLAM_A SINE Alu 24 106 -27 2422 86 3 0 chr1 144736458 144736759 -97927594 + AluSp SINE Alu 1 302 -11 579 147 0 49 chr1 144736764 144736866 -97927487 - AluJo SINE Alu -12 300 204 966 129 0 26 chr1 144736868 144737023 -97927330 - AluJo SINE Alu -161 151 1 522 186 0 100 chr1 144737356 144737496 -97926857 - MLT1E2 LTR MaLR -488 138 13 195 188 106 71 chr1 144737528 144737613 -97926740 - L2 LINE L2 -1 3312 3225 405 202 48 39 chr1 144737865 144737969 -97926384 + MIR SINE MIR 99 203 -59 1111 139 12 0 chr1 144738047 144738219 -97926134 - AluSq SINE Alu 0 313 140 2319 94 0 13 chr1 144738225 144738533 -97925820 - AluSg SINE Alu -6 304 1 2429 85 0 0 chr1 144738855 144739161 -97925192 - AluSq SINE Alu -7 306 1 187 256 70 23 chr1 144739531 144739617 -97924736 - MIR SINE MIR -16 246 157 207 69 0 0 chr1 144740476 144740505 -97923848 + (CGG)n Simple_repeat Simple_repeat 2 30 0 1984 253 80 56 chr1 144740753 144741464 -97922889 + MER21B LTR ERV1 10 737 -126 1796 180 3 0 chr1 144741542 144741842 -97922511 + AluSx SINE Alu 1 301 -11 256 354 22 22 chr1 144741884 144742065 -97922288 + L2 LINE L2 589 769 -2545 582 254 35 35 chr1 144742164 144742361 -97921992 - Charlie8 DNA MER1_type -2153 264 68 1679 160 6 29 chr1 144743021 144743334 -97921019 - AluJo SINE Alu -6 306 1 2042 132 7 0 chr1 144743380 144743668 -97920685 - AluSx SINE Alu -22 290 1 496 332 29 19 chr1 144743841 144743958 -97920395 + L2 LINE L2 2243 2364 -950 1869 131 10 14 chr1 144743958 144744255 -97920098 + AluJb SINE Alu 9 304 -8 496 332 29 19 chr1 144744255 144744345 -97920008 + L2 LINE L2 2364 2452 -862 295 320 192 30 chr1 144744345 144744679 -97919674 + L2 LINE L2 2571 2958 -356 2072 101 52 0 chr1 144744681 144744968 -97919385 - AluSx SINE Alu -8 304 3 210 341 85 23 chr1 144745145 144745274 -97919079 + L2 LINE L2 3136 3272 0 308 332 161 22 chr1 144745307 144745581 -97918772 + L2 LINE L2 3001 3312 -1 2346 76 0 16 chr1 144745639 144745942 -97918411 + AluSg SINE Alu 1 298 -12 390 405 20 0 chr1 144746190 144746343 -97918010 + L2 LINE L2 3117 3272 0 551 168 30 0 chr1 144746489 144746590 -97917763 - L1MA3 LINE L1 -5 6300 6197 2268 109 3 0 chr1 144747746 144748048 -97916305 - AluSq SINE Alu -10 303 1 300 167 0 0 chr1 144748076 144748118 -97916235 - Alu SINE Alu -260 42 1 2131 213 33 79 chr1 144748131 144748240 -97916113 - L1MB4 LINE L1 -1 6179 6067 2438 88 0 25 chr1 144748240 144748559 -97915794 - AluSx SINE Alu -1 311 1 2131 213 33 79 chr1 144748559 144748671 -97915682 - L1MB4 LINE L1 -113 6067 5951 2046 117 3 3 chr1 144748671 144748954 -97915399 + AluSq SINE Alu 2 284 -29 2131 213 33 79 chr1 144748954 144749166 -97915187 - L1MB4 LINE L1 -229 5951 5785 2293 80 0 3 chr1 144749166 144749476 -97914877 - AluSp SINE Alu 0 309 1 2131 213 33 79 chr1 144749476 144749738 -97914615 - L1MB4 LINE L1 -395 5785 5513 269 148 0 19 chr1 144749764 144749818 -97914535 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 206 218 32 24 chr1 144749798 144749922 -97914431 + CT-rich Low_complexity Low_complexity 3 127 0 * 3409 183 43 134 chr1 144749953 144750529 -97913824 - L1MB4 LINE L1 -728 5450 4823 2877 13 0 0 chr1 144750529 144750839 -97913514 + AluYa5 SINE Alu 1 310 -1 3409 183 43 134 chr1 144750839 144750956 -97913397 - L1MB4 LINE L1 -1355 4823 4697 1947 110 0 48 chr1 144750956 144751278 -97913075 - AluSx SINE Alu 0 312 5 673 199 121 21 chr1 144751284 144751425 -97912928 - FRAM SINE Alu -21 155 1 3409 183 43 134 chr1 144751425 144751860 -97912493 - L1MB4 LINE L1 -1486 4692 4335 1115 168 184 43 chr1 144751860 144752116 -97912237 - AluJo SINE Alu -10 292 1 3409 183 43 134 chr1 144752116 144752245 -97912108 - L1MB4 LINE L1 -1843 4335 4196 35 24 0 0 chr1 144752385 144752427 -97911926 + AT_rich Low_complexity Low_complexity 1 42 0 4766 114 19 24 chr1 144752734 144752773 -97911580 - HSMAR1 DNA Mariner -1 1286 1248 2155 119 3 16 chr1 144752773 144753083 -97911270 - AluSq SINE Alu -7 306 1 4766 114 19 24 chr1 144753083 144754228 -97910125 - HSMAR1 DNA Mariner -39 1248 7 216 204 0 20 chr1 144754277 144754314 -97910039 + (TATATG)n Simple_repeat Simple_repeat 6 43 -10 1951 164 58 18 chr1 144754314 144754710 -97909643 - L1MB3 LINE L1 -7 6176 5765 216 204 0 20 chr1 144754710 144754721 -97909632 + (TATATG)n Simple_repeat Simple_repeat 43 53 0 617 208 76 30 chr1 144754794 144754990 -97909363 - L1ME LINE L1 -346 5820 5604 1557 163 16 29 chr1 144755036 144755343 -97909010 - AluJb SINE Alu -9 303 1 816 176 48 27 chr1 144755352 144755539 -97908814 - L1MB3 LINE L1 -567 5613 5423 1523 159 28 31 chr1 144755557 144755847 -97908506 - AluJb SINE Alu -18 294 6 2043 122 0 0 chr1 144755902 144756180 -97908173 + AluSx SINE Alu 26 303 -9 1115 114 0 13 chr1 144756197 144756355 -97907998 - AluSg/x SINE Alu -17 295 140 2426 80 0 3 chr1 144756517 144756819 -97907534 + AluSp SINE Alu 1 301 -12 1974 98 0 0 chr1 144756826 144757081 -97907272 + AluSc SINE Alu 2 256 -53 314 95 0 0 chr1 144757831 144757873 -97906480 + AluSc SINE Alu 253 294 -8 240 309 41 10 chr1 144758069 144758166 -97906187 - L1MC/D LINE L1 -1888 5920 5821 2224 109 7 0 chr1 144758191 144758494 -97905859 - AluSg SINE Alu -4 306 2 228 284 67 55 chr1 144758503 144758806 -97905547 - L1MB3 LINE L1 -922 5224 4926 2124 113 0 3 chr1 144758806 144759113 -97905240 - AluSx SINE Alu 0 306 1 228 284 67 55 chr1 144759113 144759248 -97905105 - L1MB3 LINE L1 -1220 4926 4776 687 220 0 88 chr1 144759248 144759430 -97904923 - FRAM SINE Alu 0 166 1 228 284 67 55 chr1 144759430 144759465 -97904888 - L1MB3 LINE L1 -1370 4776 4743 1901 155 3 7 chr1 144759972 144760269 -97904084 - AluSx SINE Alu -14 298 3 1452 181 13 66 chr1 144760735 144761039 -97903314 - AluJo SINE Alu -14 288 1 2296 81 10 0 chr1 144761333 144761628 -97902725 - AluSp SINE Alu -15 298 1 910 141 16 0 chr1 144761688 144761816 -97902537 - FLAM_C SINE Alu -2 131 2 2050 142 10 3 chr1 144761912 144762214 -97902139 - AluSx SINE Alu -8 304 1 3132 55 0 0 chr1 144762418 144762783 -97901570 + L1PA5 LINE L1 5783 6147 -7 496 122 46 122 chr1 144762887 144763018 -97901335 - L1MB7 LINE L1 -19 6165 6045 180 97 0 0 chr1 144763576 144763607 -97900746 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2260 97 3 3 chr1 144763757 144764057 -97900296 - AluSq SINE Alu -13 300 1 1623 171 7 0 chr1 144764606 144764875 -97899478 + AluJb SINE Alu 1 271 -41 2409 93 0 7 chr1 144766260 144766570 -97897783 + AluSc SINE Alu 2 309 0 2376 84 0 0 chr1 144766668 144766954 -97897399 + AluSc SINE Alu 1 286 -23 1453 184 0 0 chr1 144766999 144767232 -97897121 + AluSx SINE Alu 42 274 -38 650 239 0 36 chr1 144767293 144767431 -97896922 + FLAM_A SINE Alu 1 133 0 2059 135 3 26 chr1 144767630 144767942 -97896411 - AluSx SINE Alu -7 305 1 498 107 0 27 chr1 144769811 144769886 -97894467 + AluJ SINE Alu 69 141 -171 2326 106 3 0 chr1 144769888 144770200 -97894153 + AluSp SINE Alu 1 313 0 423 208 0 0 chr1 144770208 144770280 -97894073 + AluJ SINE Alu 118 189 -123 2190 176 15 44 chr1 144770281 144770577 -97893776 - L1MB3 LINE L1 -75 6108 5805 2437 59 0 13 chr1 144770577 144770880 -97893473 + AluY SINE Alu 1 299 -12 2190 176 15 44 chr1 144770880 144770920 -97893433 - L1MB3 LINE L1 -378 5805 5765 1918 179 122 15 chr1 144770920 144771312 -97893041 - Tigger2a DNA MER2_type 0 434 1 2190 176 15 44 chr1 144771312 144771451 -97892902 - L1MB3 LINE L1 -418 5765 5646 1729 189 0 22 chr1 144771683 144772001 -97892352 + AluJo SINE Alu 1 311 -1 593 202 39 0 chr1 144772255 144772359 -97891994 + Tigger3(Golem) DNA MER2_type 1 108 -2921 3446 135 73 52 chr1 144772359 144772601 -97891752 + Tigger3(Golem) DNA MER2_type 2284 2520 -508 2169 118 6 10 chr1 144772601 144772914 -97891439 - AluSq SINE Alu -1 312 1 3446 135 73 52 chr1 144772914 144773395 -97890958 + Tigger3(Golem) DNA MER2_type 2520 3022 -6 992 302 204 20 chr1 144773402 144774739 -97889614 + L2 LINE L2 1715 3312 -1 2119 113 0 20 chr1 144774746 144775039 -97889314 - AluSx SINE Alu -21 291 5 571 105 35 133 chr1 144775415 144775512 -97888841 + L1MB7 LINE L1 6045 6125 -59 1269 230 35 7 chr1 144775512 144775795 -97888558 + AluJb SINE Alu 1 291 -21 571 105 35 133 chr1 144775795 144775840 -97888513 + L1MB7 LINE L1 6125 6173 -11 2110 88 25 44 chr1 144776286 144776605 -97887748 + AluSp SINE Alu 1 313 0 1985 153 0 10 chr1 144776656 144776964 -97887389 + AluSx SINE Alu 1 305 -7 374 352 51 0 chr1 144777010 144777186 -97887167 + MIR SINE MIR 13 197 -65 643 140 11 0 chr1 144777229 144777322 -97887031 + AluJ/FLAM SINE Alu 2 95 -217 22 0 0 0 chr1 144777329 144777351 -97887002 + AT_rich Low_complexity Low_complexity 1 22 0 261 184 19 107 chr1 144777468 144777571 -97886782 + L1M4 LINE L1 5304 5397 -749 1755 154 6 43 chr1 144777630 144777954 -97886399 - AluJo SINE Alu 0 312 1 348 24 0 0 chr1 144777973 144778014 -97886339 + (TG)n Simple_repeat Simple_repeat 1 41 0 1667 154 11 32 chr1 144778014 144778299 -97886054 - AluSx SINE Alu -33 279 1 2224 86 14 3 chr1 144778365 144778656 -97885697 + AluY SINE Alu 1 294 -17 378 0 0 0 chr1 144778791 144778833 -97885520 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2131 97 42 0 chr1 144778851 144779140 -97885213 - AluY SINE Alu -10 301 1 2132 109 0 10 chr1 144779141 144779434 -97884919 - AluSg SINE Alu -16 294 5 2088 88 19 56 chr1 144779931 144780251 -97884102 - AluSc SINE Alu -1 308 1 2290 103 0 0 chr1 144780444 144780746 -97883607 + AluSg1 SINE Alu 1 302 -7 884 220 54 64 chr1 144780824 144780946 -97883407 - L1ME3A LINE L1 -4 6166 6044 1606 142 50 70 chr1 144780946 144781248 -97883105 + AluJo SINE Alu 2 297 -15 884 220 54 64 chr1 144781248 144781438 -97882915 - L1ME3A LINE L1 -126 6044 5857 2013 141 3 0 chr1 144781440 144781745 -97882608 - AluSp SINE Alu -7 306 1 186 43 0 0 chr1 144781750 144781773 -97882580 + (T)n Simple_repeat Simple_repeat 1 23 0 1916 82 31 45 chr1 144781943 144782234 -97882119 - L1MA2 LINE L1 0 6304 6018 669 317 194 10 chr1 144782250 144782663 -97881690 + L3 LINE CR1 896 1384 -193 654 188 67 18 chr1 144782758 144782923 -97881430 - L1MC5 LINE L1 -1162 6799 6627 1019 171 0 24 chr1 144783144 144783314 -97881039 + FRAM SINE Alu 1 166 0 2088 113 14 3 chr1 144783358 144783650 -97880703 - AluSx SINE Alu -15 297 3 2332 110 0 0 chr1 144783673 144783982 -97880371 - AluSx SINE Alu -3 309 1 2396 83 3 0 chr1 144784121 144784422 -97879931 - AluSx SINE Alu -10 302 1 939 213 27 111 chr1 144784621 144784685 -97879668 - L1MC4a LINE L1 -1845 5963 5895 180 0 0 0 chr1 144784685 144784705 -97879648 + (CATAG)n Simple_repeat Simple_repeat 5 24 0 939 213 27 111 chr1 144784705 144785045 -97879308 - L1MC4a LINE L1 -1913 5895 5587 408 306 68 12 chr1 144785085 144785422 -97878931 - L1MC4a LINE L1 -1300 4846 4491 208 339 97 0 chr1 144785437 144785499 -97878854 + L3 LINE CR1 1371 1438 -139 21 57 0 0 chr1 144790823 144790858 -97873495 + AT_rich Low_complexity Low_complexity 1 35 0 2321 100 0 10 chr1 144791776 144792085 -97872268 + AluY SINE Alu 1 306 -5 2156 112 0 0 chr1 144842256 144842533 -97821820 + AluSx SINE Alu 23 299 -13 2389 97 7 0 chr1 144842599 144842909 -97821444 - AluSx SINE Alu 0 312 1 2223 100 7 0 chr1 144843606 144843895 -97820458 + AluSp SINE Alu 5 295 -18 2520 170 151 44 chr1 144844432 144844633 -97819720 + L1MD3 LINE L1 6904 7082 -913 360 240 67 0 chr1 144844633 144844708 -97819645 + MLT1F1 LTR MaLR 45 124 -443 2520 170 151 44 chr1 144844708 144845237 -97819116 + L1MD3 LINE L1 7082 7992 -3 1569 117 24 16 chr1 144846269 144846518 -97817835 + L1MA4A LINE L1 6047 6297 -6 2394 70 0 0 chr1 144846699 144847012 -97817341 - AluY SINE Alu 0 313 1 207 0 0 0 chr1 144847772 144847795 -97816558 + (T)n Simple_repeat Simple_repeat 1 23 0 186 43 0 0 chr1 144849270 144849293 -97815060 + (TTA)n Simple_repeat Simple_repeat 1 23 0 1611 179 7 7 chr1 144849298 144849572 -97814781 - AluJb SINE Alu -35 277 4 21 57 0 0 chr1 144849627 144849662 -97814691 + AT_rich Low_complexity Low_complexity 1 35 0 242 259 0 17 chr1 144849773 144849831 -97814522 - MIR SINE MIR -189 73 17 243 307 9 97 chr1 144851121 144851235 -97813118 + L2 LINE L2 3157 3260 -12 2200 98 20 3 chr1 144851274 144851571 -97812782 + AluSx SINE Alu 1 302 -10 2367 89 0 0 chr1 144852754 144853046 -97811307 - AluSg SINE Alu -18 292 1 2291 102 0 0 chr1 144853878 144854173 -97810180 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr1 144854476 144854504 -97809849 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr1 144854616 144854656 -97809697 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 2012 126 3 7 chr1 144854656 144854941 -97809412 - AluSx SINE Alu -28 284 1 837 250 75 15 chr1 144855286 144855486 -97808867 + MER58C DNA MER1_type 4 215 0 529 303 120 20 chr1 144856300 144856600 -97807753 - MLT1I LTR MaLR -79 330 1 373 337 148 15 chr1 144856633 144857039 -97807314 - L2 LINE L2 -910 2404 1945 2133 98 7 3 chr1 144858642 144858952 -97805401 - AluSx SINE Alu 0 311 1 240 354 26 9 chr1 144859164 144859277 -97805076 + MIR SINE MIR 84 198 -64 2403 64 0 10 chr1 144859319 144859617 -97804736 - AluY SINE Alu -16 295 1 2180 129 3 0 chr1 144859617 144859920 -97804433 - AluSx SINE Alu -8 304 1 1991 154 0 0 chr1 144860067 144860365 -97803988 - AluSx SINE Alu -14 298 1 1974 148 7 7 chr1 144860581 144860886 -97803467 + AluSx SINE Alu 1 305 -7 336 92 0 92 chr1 144861057 144861099 -97803254 - L1MB2 LINE L1 0 6171 6135 2222 101 7 0 chr1 144861099 144861395 -97802958 + AluSx SINE Alu 1 298 -14 336 92 0 92 chr1 144861395 144861417 -97802936 - L1MB2 LINE L1 -36 6135 6113 1952 134 4 0 chr1 144861417 144861693 -97802660 + AluSx SINE Alu 1 277 -35 186 43 0 0 chr1 144861696 144861719 -97802634 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 839 139 39 0 chr1 144861751 144861880 -97802473 - AluSq SINE Alu -102 211 78 712 173 43 32 chr1 144862023 144862208 -97802145 - AluSx SINE Alu -122 190 4 2810 157 77 53 chr1 144862218 144862464 -97801889 - L1MB2 LINE L1 -49 6122 5883 2166 130 3 0 chr1 144862464 144862771 -97801582 - AluSp SINE Alu -3 310 3 2810 157 77 53 chr1 144862771 144863122 -97801231 - L1MB2 LINE L1 -288 5883 5511 1378 247 50 62 chr1 144863165 144863869 -97800484 + L1ME1 LINE L1 1136 1830 -4566 2423 81 0 0 chr1 144863870 144864166 -97800187 + AluY SINE Alu 1 296 -15 1179 226 90 40 chr1 144864181 144864455 -97799898 + L1ME1 LINE L1 2751 3055 -3160 2297 89 0 7 chr1 144864455 144864746 -97799607 + AluSc SINE Alu 1 289 -20 1179 226 90 40 chr1 144864746 144864892 -97799461 + L1ME1 LINE L1 3055 3192 -3023 2215 95 3 7 chr1 144864894 144865188 -97799165 + AluSg SINE Alu 1 293 -17 448 262 7 62 chr1 144865194 144865363 -97798990 + FLAM_A SINE Alu 1 142 0 3147 162 54 6 chr1 144865366 144866159 -97798194 + L1M1 LINE L1 4668 5495 -743 849 163 7 7 chr1 144866159 144866300 -97798053 + AluSq/x SINE Alu 1 141 -172 24 0 0 0 chr1 144866322 144866346 -97798007 + AT_rich Low_complexity Low_complexity 1 24 0 950 236 30 34 chr1 144866353 144866616 -97797737 + L1ME1 LINE L1 3942 4203 -2012 346 267 67 42 chr1 144866617 144866782 -97797571 + L1ME1 LINE L1 4268 4436 -1779 2272 45 69 7 chr1 144866787 144867077 -97797276 + AluY SINE Alu 2 309 -2 2086 134 7 0 chr1 144867090 144867388 -97796965 + AluJb SINE Alu 1 300 -12 247 312 0 0 chr1 144867410 144867503 -97796850 + L1ME1 LINE L1 4442 4534 -1681 1330 147 113 82 chr1 144867505 144867798 -97796555 + AluJb SINE Alu 1 302 0 192 40 0 0 chr1 144867802 144867827 -97796526 + (CA)n Simple_repeat Simple_repeat 1 25 0 419 281 87 0 chr1 144867872 144868057 -97796296 + L1ME1 LINE L1 4526 4726 -1489 585 167 21 0 chr1 144868058 144868154 -97796199 + AluJ/FLAM SINE Alu 2 99 -213 26 30 0 0 chr1 144868167 144868200 -97796153 + AT_rich Low_complexity Low_complexity 1 33 0 2159 104 0 4 chr1 144868200 144868480 -97795873 + AluSq SINE Alu 1 279 -34 970 203 51 16 chr1 144868487 144868743 -97795610 + L1ME1 LINE L1 4917 5181 -1034 2196 102 0 7 chr1 144868768 144869072 -97795281 + AluYa5 SINE Alu 1 302 -9 2273 234 70 41 chr1 144869100 144869403 -97794950 + L1ME1 LINE L1 5361 5654 -581 2323 99 7 0 chr1 144869403 144869705 -97794648 + AluSx SINE Alu 1 304 -8 2273 234 70 41 chr1 144869705 144870229 -97794124 + L1ME1 LINE L1 5654 6212 -23 269 270 63 38 chr1 144870103 144870262 -97794091 + L1MA10 LINE L1 6239 6401 -2 * 240 35 0 0 chr1 144870924 144870953 -97793400 + (A)n Simple_repeat Simple_repeat 1 29 0 457 221 148 0 chr1 144870953 144871075 -97793278 - MLT1G3 LTR MaLR -222 308 169 297 286 217 33 chr1 144871505 144871781 -97792572 - L2 LINE L2 -896 2418 2092 1876 163 6 10 chr1 144872063 144872376 -97791977 - AluJo SINE Alu 0 312 1 1384 211 40 7 chr1 144872709 144872984 -97791369 - AluJo SINE Alu -24 288 5 268 278 46 19 chr1 144874280 144874299 -97790054 - MIR3 SINE MIR -6 202 185 2023 136 24 0 chr1 144874299 144874593 -97789760 + AluSx SINE Alu 1 301 -11 268 278 46 19 chr1 144874593 144874681 -97789672 - MIR3 SINE MIR -23 185 92 2526 189 54 19 chr1 144874706 144875344 -97789009 - L1M3 LINE L1 -375 5796 5138 1678 224 0 50 chr1 144875355 144875652 -97788701 + L1M4 LINE L1 4743 5053 -1093 2483 86 0 0 chr1 144875652 144875955 -97788398 + AluSg SINE Alu 1 303 -7 2129 97 3 10 chr1 144875961 144876271 -97788082 + AluSp SINE Alu 7 313 0 1678 224 0 50 chr1 144876271 144876367 -97787986 + L1M4 LINE L1 5058 5123 -1023 2229 123 0 0 chr1 144876370 144876678 -97787675 - AluSx SINE Alu -4 308 1 198 118 0 0 chr1 144877266 144877300 -97787053 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2042 110 0 0 chr1 144877307 144877570 -97786783 - AluSx SINE Alu -48 264 2 2079 88 34 34 chr1 144877576 144877872 -97786481 - AluSg SINE Alu -10 300 5 216 0 0 0 chr1 144877919 144877943 -97786410 + (T)n Simple_repeat Simple_repeat 1 24 0 1324 151 0 23 chr1 144879489 144879708 -97784645 + AluSg/x SINE Alu 84 297 -15 223 300 67 25 chr1 144879956 144880076 -97784277 - L2 LINE L2 0 3313 3189 197 333 0 0 chr1 144880415 144880472 -97783881 + MIR SINE MIR 12 68 -194 1438 164 6 80 chr1 144880532 144880665 -97783688 + AluJb SINE Alu 1 142 -170 1639 169 10 13 chr1 144880665 144880967 -97783386 - AluJb SINE Alu -11 301 1 1438 164 6 80 chr1 144880967 144881144 -97783209 + AluJb SINE Alu 142 288 -24 203 102 82 0 chr1 144881179 144881228 -97783125 + (TA)n Simple_repeat Simple_repeat 2 54 0 1959 122 35 0 chr1 144881228 144881514 -97782839 - AluSx SINE Alu -16 296 1 686 195 25 0 chr1 144881529 144881647 -97782706 + FLAM_A SINE Alu 4 124 -9 240 298 156 13 chr1 144881725 144882098 -97782255 + L1M4 LINE L1 3146 3571 -2575 1918 159 0 0 chr1 144882171 144882466 -97781887 + AluJb SINE Alu 1 295 -17 973 153 6 41 chr1 144882469 144882639 -97781714 + AluJb SINE Alu 129 292 -20 1565 174 39 3 chr1 144882899 144883181 -97781172 + AluJo SINE Alu 17 308 -4 228 242 55 44 chr1 144883183 144883274 -97781079 - L1ME LINE L1 -254 5916 5825 4064 66 2 61 chr1 144883438 144883981 -97780372 - MER9 LTR ERVK 0 511 1 2292 95 0 10 chr1 144883993 144884288 -97780065 - AluSq SINE Alu -19 294 3 2437 165 54 2 chr1 144884299 144884706 -97779647 - MSTA LTR MaLR 0 428 1 2138 119 0 29 chr1 144884708 144884843 -97779510 + AluSx SINE Alu 1 138 -174 2211 88 17 3 chr1 144884843 144885139 -97779214 + AluSq SINE Alu 1 300 -13 2138 119 0 29 chr1 144885139 144885314 -97779039 + AluSx SINE Alu 138 302 -10 273 245 158 28 chr1 144885409 144885587 -97778766 + L1 LINE L1 4804 5004 -1142 659 185 110 75 chr1 144885589 144885843 -97778510 + Tigger2 DNA MER2_type 1 263 -2455 1504 140 15 60 chr1 144885846 144885946 -97778407 + AluSq SINE Alu 40 143 -170 2517 48 0 7 chr1 144885946 144886077 -97778276 + AluY SINE Alu 1 131 -180 2129 103 3 21 chr1 144886077 144886390 -97777963 + AluSx SINE Alu 1 308 0 2517 48 0 7 chr1 144886390 144886566 -97777787 + AluY SINE Alu 131 307 -4 2028 110 7 39 chr1 144886569 144886713 -97777640 + AluSx SINE Alu 1 148 -164 2263 93 14 3 chr1 144886713 144887004 -97777349 + AluSg SINE Alu 1 294 -16 2028 110 7 39 chr1 144887004 144887169 -97777184 + AluSx SINE Alu 148 300 -12 2008 118 10 23 chr1 144887172 144887476 -97776877 + AluSx SINE Alu 1 300 -12 1504 140 15 60 chr1 144887476 144887632 -97776721 + AluSq SINE Alu 147 292 -21 3505 146 37 29 chr1 144887632 144887740 -97776613 + Tigger2 DNA MER2_type 254 360 -2358 2265 102 3 0 chr1 144887740 144888035 -97776318 + AluSp SINE Alu 1 296 -17 3505 146 37 29 chr1 144888035 144888422 -97775931 + Tigger2 DNA MER2_type 360 758 -1960 2039 109 17 3 chr1 144888422 144888715 -97775638 + AluSg SINE Alu 1 297 -13 3505 146 37 29 chr1 144888715 144888842 -97775511 + Tigger2 DNA MER2_type 758 882 -1836 954 101 72 0 chr1 144888848 144889017 -97775336 - AluSc SINE Alu 0 310 132 605 165 0 0 chr1 144889117 144889214 -97775139 - AluS SINE Alu -214 98 2 327 104 21 0 chr1 144889215 144889263 -97775090 + Tigger2 DNA MER2_type 873 921 -1797 2079 121 7 3 chr1 144889267 144889565 -97774788 + AluSq SINE Alu 3 301 -12 2034 129 10 6 chr1 144889565 144889876 -97774477 + AluSx SINE Alu 1 312 0 543 81 40 0 chr1 144889878 144889952 -97774401 + Tigger2 DNA MER2_type 1069 1145 -1573 576 121 0 44 chr1 144889955 144890196 -97774157 + AluSq SINE Alu 1 292 -21 1195 118 6 0 chr1 144890196 144890366 -97773987 + AluSg/x SINE Alu 119 289 -21 1514 159 9 44 chr1 144890369 144890690 -97773663 + L1MB3 LINE L1 5874 6183 0 570 189 129 133 chr1 144890690 144890820 -97773533 - L1M4 LINE L1 -1288 4858 4729 2421 80 3 0 chr1 144890820 144891122 -97773231 - AluY SINE Alu -8 303 1 570 189 129 133 chr1 144891122 144891259 -97773094 - L1M4 LINE L1 -1417 4729 4593 1587 189 37 17 chr1 144891259 144891556 -97772797 - AluJb SINE Alu -7 305 3 570 189 129 133 chr1 144891556 144891649 -97772704 - L1M4 LINE L1 -1553 4593 4501 2200 119 10 0 chr1 144891649 144891944 -97772409 - AluSx SINE Alu -14 298 1 570 189 129 133 chr1 144891944 144892084 -97772269 - L1M4 LINE L1 -1645 4501 4358 370 89 0 0 chr1 144892129 144892185 -97772168 - AluY SINE Alu 0 300 245 1818 140 20 24 chr1 144892185 144892477 -97771876 - AluSx SINE Alu -21 291 1 804 261 82 25 chr1 144892480 144892798 -97771555 - L1M4 LINE L1 -1750 4396 4061 363 296 9 9 chr1 144892878 144892993 -97771360 - L1MDa LINE L1 -6423 117 3 732 135 29 0 chr1 144893012 144893116 -97771237 - U6 snRNA snRNA 0 107 1 922 136 7 0 chr1 144893254 144893394 -97770959 - FLAM_C SINE Alu -2 141 1 28 0 0 0 chr1 144893437 144893465 -97770888 + AT_rich Low_complexity Low_complexity 1 28 0 2031 63 24 8 chr1 144893470 144893725 -97770628 - AluY SINE Alu -52 259 1 267 276 90 14 chr1 144893736 144893881 -97770472 - L1MDa LINE L1 -4811 1404 1249 801 242 89 29 chr1 144894041 144894533 -97769820 - L1MDa LINE L1 -5215 1181 660 1279 95 0 0 chr1 144894540 144894708 -97769645 - AluSp SINE Alu -16 297 130 2165 115 3 0 chr1 144894854 144895140 -97769213 + AluSg SINE Alu 1 287 -23 330 204 102 11 chr1 144895144 144895232 -97769121 - MIR SINE MIR 0 262 167 1405 203 76 53 chr1 144895414 144895460 -97768893 - L1ME2 LINE L1 0 6164 6121 2516 40 0 14 chr1 144895460 144895756 -97768597 - AluY SINE Alu -16 295 4 1405 203 76 53 chr1 144895756 144896103 -97768250 - L1ME2 LINE L1 -43 6121 5762 690 233 78 60 chr1 144896100 144896166 -97768187 + L1ME LINE L1 3347 3410 -2736 * 2324 104 0 0 chr1 144896166 144896475 -97767878 + AluSg1 SINE Alu 1 309 0 690 233 78 60 chr1 144896475 144896624 -97767729 + L1ME LINE L1 3410 3555 -2591 1428 155 72 56 chr1 144896624 144896928 -97767425 + AluJo SINE Alu 1 309 -3 690 233 78 60 chr1 144896928 144897629 -97766724 + L1ME LINE L1 3555 4242 -1904 2398 106 0 0 chr1 144897629 144897931 -97766422 + AluSg SINE Alu 1 302 -8 690 233 78 60 chr1 144897931 144897945 -97766408 + L1ME LINE L1 4242 4254 -1892 1881 157 7 13 chr1 144897945 144898251 -97766102 + AluSx SINE Alu 1 304 -8 690 233 78 60 chr1 144898251 144898403 -97765950 + L1ME LINE L1 4254 4531 -1615 2239 121 1 10 chr1 144898422 144898935 -97765418 - MER41A LTR ERV1 -88 547 1 1414 113 59 0 chr1 144898935 144899139 -97765214 - MER41A-int LTR ERV1 -2 5944 5729 1257 131 20 5 chr1 144899135 144899399 -97764954 - MER41A-int LTR ERV1 -938 5306 5047 * 2196 96 0 55 chr1 144899399 144899711 -97764642 + AluSq SINE Alu 2 296 -17 1257 131 20 5 chr1 144899711 144899730 -97764623 - MER41A-int LTR ERV1 -1197 5047 4669 544 122 33 33 chr1 144899721 144899811 -97764542 - MER41A-int LTR ERV1 -5856 90 1 * 1046 62 0 86 chr1 144899815 144899977 -97764376 - MER41A LTR ERV1 -7 547 400 1605 161 63 14 chr1 144899977 144900263 -97764090 - AluSc SINE Alu -9 300 1 836 250 111 21 chr1 144900292 144900624 -97763729 + L1ME LINE L1 5337 5698 -472 1572 178 118 4 chr1 144900639 144900909 -97763444 - AluJb SINE Alu -1 301 1 2088 129 0 0 chr1 144900919 144901214 -97763139 - AluSx SINE Alu -1 311 17 247 150 0 0 chr1 144901217 144901257 -97763096 + Alu SINE Alu 255 294 -6 183 319 66 22 chr1 144901970 144902061 -97762292 - L2 LINE L2 -504 2810 2716 207 261 80 23 chr1 144902248 144902336 -97762017 + MIR SINE MIR 163 255 -7 327 311 192 11 chr1 144902500 144902677 -97761676 + MIR SINE MIR 51 259 -3 1819 126 48 0 chr1 144903801 144904091 -97760262 + AluSx SINE Alu 2 304 0 400 263 0 0 chr1 144904554 144904649 -97759704 + U13 snRNA snRNA 1 95 -9 2557 65 3 0 chr1 144904805 144905115 -97759238 - AluY SINE Alu 0 311 1 191 308 167 0 chr1 144905384 144905462 -97758891 - L2 LINE L2 -249 3023 2933 2344 79 7 0 chr1 144905612 144905903 -97758450 + AluSp SINE Alu 5 297 -16 704 261 68 82 chr1 144906278 144906580 -97757773 - MLT1J LTR MaLR -2 509 213 2277 109 0 3 chr1 144906580 144906893 -97757460 - AluSq SINE Alu -1 312 1 704 261 68 82 chr1 144906893 144907016 -97757337 - MLT1J LTR MaLR -298 213 90 435 119 83 24 chr1 144907188 144907272 -97757081 - MER21A LTR ERV1 0 931 843 25 31 0 0 chr1 144907292 144907324 -97757029 + AT_rich Low_complexity Low_complexity 1 32 0 3818 163 92 56 chr1 144907325 144907791 -97756562 - MER21A LTR ERV1 -65 866 418 999 184 0 6 chr1 144907791 144907954 -97756399 - FRAM SINE Alu -4 162 1 2121 117 3 3 chr1 144907958 144908257 -97756096 - AluSx SINE Alu -13 299 1 3818 163 92 56 chr1 144908257 144908598 -97755755 - MER21A LTR ERV1 -515 416 25 396 111 0 0 chr1 144908598 144908670 -97755683 + (TA)n Simple_repeat Simple_repeat 2 73 0 1513 148 41 4 chr1 144909023 144909293 -97755060 - L1MC1 LINE L1 -6 6327 6048 987 179 0 12 chr1 144909311 144909479 -97754874 + AluJo SINE Alu 1 166 -146 516 138 0 4 chr1 144909485 144909569 -97754784 - L1MC1 LINE L1 -210 6126 6048 457 162 0 0 chr1 144909578 144909646 -97754707 + AluJ/FLAM SINE Alu 2 69 -243 1740 160 4 0 chr1 144909648 144909923 -97754430 + AluSx SINE Alu 35 310 -2 872 216 0 53 chr1 144909928 144910099 -97754254 + FRAM SINE Alu 3 164 -12 1657 87 5 0 chr1 144910127 144910333 -97754020 - AluSq SINE Alu -106 207 1 321 222 0 33 chr1 144910342 144910432 -97753921 - L1MC4 LINE L1 -476 7566 7480 851 147 0 0 chr1 144910461 144910590 -97753763 + FLAM_C SINE Alu 11 139 -4 799 276 84 34 chr1 144910611 144910902 -97753451 - L1MC4 LINE L1 -572 7470 7156 2006 125 34 3 chr1 144910902 144911197 -97753156 + AluSx SINE Alu 2 305 -7 799 276 84 34 chr1 144911197 144911263 -97753090 - L1MC4 LINE L1 -886 7156 7095 207 0 0 0 chr1 144911283 144911306 -97753047 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 747 194 39 0 chr1 144911349 144911478 -97752875 - FLAM_C SINE Alu -8 135 2 712 214 28 163 chr1 144911493 144911891 -97752462 - L1MC4 LINE L1 -1014 7028 6685 679 231 77 0 chr1 144911893 144912049 -97752304 - MLT1E1 LTR MaLR 0 654 487 1315 174 51 77 chr1 144912218 144912610 -97751743 - L1MB8 LINE L1 -111 6067 5686 1419 282 64 9 chr1 144912619 144912984 -97751369 - L1MC4 LINE L1 -746 5400 5404 1717 77 0 0 chr1 144912984 144913193 -97751160 - AluSg/x SINE Alu -20 292 84 1419 282 64 9 chr1 144913193 144913439 -97750914 - L1MC4 LINE L1 -741 5405 5174 819 187 46 156 chr1 144913472 144913494 -97750859 - L1MC4 LINE L1 -1375 4771 4748 1712 173 13 0 chr1 144913494 144913794 -97750559 - AluJo SINE Alu -8 304 1 819 187 46 156 chr1 144913794 144913991 -97750362 - L1MC4 LINE L1 -1398 4748 4531 2098 139 0 0 chr1 144913991 144914294 -97750059 - AluSx SINE Alu -9 303 1 819 187 46 156 chr1 144914294 144914368 -97749985 - L1MC4 LINE L1 -1615 4531 4450 1952 153 3 3 chr1 144914368 144914668 -97749685 - AluSx SINE Alu -12 300 1 819 187 46 156 chr1 144914668 144914714 -97749639 - L1MC4 LINE L1 -1696 4450 4401 1873 145 3 13 chr1 144914714 144915017 -97749336 - AluSx SINE Alu -12 300 1 819 187 46 156 chr1 144915017 144915153 -97749200 - L1MC4 LINE L1 -1745 4401 4392 2159 115 6 19 chr1 144915153 144915466 -97748887 - AluSc SINE Alu 0 309 1 819 187 46 156 chr1 144915466 144915536 -97748817 - L1MC4 LINE L1 -1754 4392 4316 884 187 0 19 chr1 144915669 144915824 -97748529 - AluJo SINE Alu -160 152 1 1556 182 35 3 chr1 144915847 144916133 -97748220 - AluJo SINE Alu -15 297 3 1315 99 0 6 chr1 144916142 144916323 -97748030 - AluSp SINE Alu -13 300 121 514 304 48 68 chr1 144916596 144916846 -97747507 - MIR SINE MIR -10 252 8 508 203 8 68 chr1 144916879 144917012 -97747341 - FLAM_C SINE Alu -10 133 9 2159 95 24 27 chr1 144917018 144917314 -97747039 - AluSq SINE Alu -18 295 1 1529 199 10 23 chr1 144917362 144917663 -97746690 + AluJo SINE Alu 1 297 -15 270 0 0 0 chr1 144918041 144918071 -97746282 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2147 107 7 3 chr1 144918117 144918407 -97745946 - AluSx SINE Alu -19 293 3 1798 138 17 21 chr1 144918421 144918712 -97745641 - AluSx SINE Alu -18 294 5 2251 113 0 3 chr1 144918720 144919021 -97745332 - AluSx SINE Alu -12 300 1 1977 125 0 11 chr1 144919042 144919329 -97745024 - AluSx SINE Alu -20 292 9 411 228 9 70 chr1 144919609 144919723 -97744630 + MIR SINE MIR 54 160 -102 1992 101 61 0 chr1 144919871 144920148 -97744205 - AluY SINE Alu -16 295 2 1674 148 14 46 chr1 144920583 144920867 -97743486 - AluSx SINE Alu -37 275 1 1557 155 0 79 chr1 144921182 144921511 -97742842 + AluJb SINE Alu 1 303 -9 2144 107 193 13 chr1 144921511 144921894 -97742459 + MER7C DNA MER2_type 88 539 -63 29 90 0 0 chr1 144922225 144922303 -97742050 + AT_rich Low_complexity Low_complexity 1 78 0 858 166 33 13 chr1 144922355 144922506 -97741847 + AluSq SINE Alu 2 155 -158 1782 288 133 42 chr1 144922637 144923615 -97740738 - HERVL LTR ERVL -1581 4073 3007 292 267 95 19 chr1 144923624 144923729 -97740624 + MER94 DNA DNA 1 113 -21 289 257 95 0 chr1 144923740 144923814 -97740539 - HERVL LTR ERVL -2720 3044 2964 1053 234 36 77 chr1 144924537 144924900 -97739453 + L1MEc LINE L1 37 384 -6012 334 141 141 0 chr1 144925096 144925167 -97739186 - L1MC4 LINE L1 -826 7216 7136 21 0 0 0 chr1 144925194 144925215 -97739138 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 144925708 144925743 -97738610 + AT_rich Low_complexity Low_complexity 1 35 0 572 269 12 6 chr1 144927549 144927709 -97736644 + AluSg/x SINE Alu 119 279 -30 194 0 0 37 chr1 144927714 144927741 -97736612 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2295 106 0 7 chr1 144927856 144928157 -97736196 - AluSx SINE Alu -13 299 1 1997 128 43 0 chr1 144928172 144928453 -97735900 - AluSx SINE Alu -19 293 1 2262 124 0 6 chr1 144928456 144928770 -97735583 - AluSx SINE Alu 0 312 1 885 162 0 36 chr1 144928770 144928937 -97735416 - FRAM SINE Alu -15 161 1 321 146 0 18 chr1 144928938 144928993 -97735360 - L1MB3 LINE L1 -45 6138 6085 2105 143 0 0 chr1 144929096 144929404 -97734949 + AluSx SINE Alu 5 312 0 1461 181 10 51 chr1 144929448 144929762 -97734591 - AluJo SINE Alu -11 301 1 1879 159 3 7 chr1 144929827 144930129 -97734224 - AluJb SINE Alu -11 301 1 25 0 0 0 chr1 144930183 144930208 -97734145 + AT_rich Low_complexity Low_complexity 1 25 0 2233 85 20 0 chr1 144930208 144930503 -97733850 + AluSx SINE Alu 1 301 -11 2053 143 7 0 chr1 144930975 144931275 -97733078 - AluJb SINE Alu -10 302 1 2190 103 0 35 chr1 144931666 144931978 -97732375 + AluSq SINE Alu 1 301 -12 1111 186 0 47 chr1 144932044 144932280 -97732073 + AluJo SINE Alu 73 297 -15 1561 106 12 134 chr1 144932693 144933022 -97731331 + AluSx SINE Alu 1 289 -13 2200 114 13 0 chr1 144933231 144933529 -97730824 + AluSq SINE Alu 1 302 -11 823 163 7 37 chr1 144933988 144934125 -97730228 - FLAM_C SINE Alu -2 131 1 1664 183 14 7 chr1 144934609 144934898 -97729455 + AluJo SINE Alu 1 291 -21 689 349 77 48 chr1 144935199 144935978 -97728375 + L2 LINE L2 2454 3271 -1 2339 99 7 0 chr1 144935990 144936292 -97728061 + AluY SINE Alu 1 304 -7 748 185 110 7 chr1 144936855 144937001 -97727352 + FRAM SINE Alu 1 161 -5 1673 266 65 84 chr1 144937005 144937072 -97727281 + L1MC/D LINE L1 3 70 -6000 2055 125 14 0 chr1 144937072 144937361 -97726992 + AluSx SINE Alu 20 312 0 1673 266 65 84 chr1 144937361 144937859 -97726494 + L1MC/D LINE L1 70 543 -5527 1829 200 0 3 chr1 144937859 144938169 -97726184 - AluJb SINE Alu -3 309 1 1673 266 65 84 chr1 144938169 144938595 -97725758 + L1MC/D LINE L1 543 976 -5094 2293 109 0 0 chr1 144938596 144938890 -97725463 + AluSx SINE Alu 1 294 -18 2464 66 0 13 chr1 144938896 144939197 -97725156 + AluY SINE Alu 4 300 -11 984 277 69 12 chr1 144939295 144939703 -97724650 - L1M4 LINE L1 -2436 3710 3280 869 229 45 48 chr1 144939720 144940034 -97724319 + L1MC/D LINE L1 3959 4271 -1809 452 211 18 44 chr1 144940026 144940140 -97724213 + L1MC/D LINE L1 5522 5632 -635 * 2211 127 0 0 chr1 144940143 144940451 -97723902 - AluSx SINE Alu -4 308 1 356 241 51 57 chr1 144940487 144940544 -97723809 - MER65B LTR ERV1 -17 514 458 2008 126 35 7 chr1 144940544 144940830 -97723523 + AluSx SINE Alu 1 294 -18 1689 163 41 20 chr1 144940835 144941129 -97723224 + AluJo SINE Alu 3 302 -10 356 241 51 57 chr1 144941129 144941223 -97723130 - MER65B LTR ERV1 -77 454 358 1677 165 3 53 chr1 144941234 144941556 -97722797 + AluJb SINE Alu 1 306 -6 298 256 35 12 chr1 144941672 144941758 -97722595 - MER65C LTR ERV1 -373 88 1 5865 147 34 32 chr1 144941809 144942568 -97721785 + L1P LINE L1 4255 5011 -1135 2102 128 17 0 chr1 144942568 144942858 -97721495 + AluSx SINE Alu 1 295 -17 5865 147 34 32 chr1 144942858 144943148 -97721205 + L1P LINE L1 5011 5299 -847 1965 129 10 29 chr1 144943148 144943457 -97720896 + AluSx SINE Alu 1 303 -9 5865 147 34 32 chr1 144943457 144943474 -97720879 + L1P LINE L1 5299 5314 -832 2177 117 7 7 chr1 144943474 144943772 -97720581 + AluSq SINE Alu 1 298 -15 5865 147 34 32 chr1 144943772 144943832 -97720521 + L1P LINE L1 5314 5385 -761 1619 231 162 90 chr1 144943833 144944190 -97720163 + L1MDa LINE L1 647 977 -5563 284 152 0 22 chr1 144944190 144944236 -97720117 + Alu SINE Alu 2 46 -256 1619 231 162 90 chr1 144944236 144944369 -97719984 + L1MDa LINE L1 977 1099 -5441 2092 132 3 10 chr1 144944369 144944680 -97719673 - AluSx SINE Alu -3 309 1 1619 231 162 90 chr1 144944680 144945143 -97719210 + L1MDa LINE L1 1099 1718 -4822 872 183 57 29 chr1 144945148 144945323 -97719030 + AluJb SINE Alu 1 180 -132 2134 169 47 25 chr1 144945336 144945809 -97718544 + L1MDa LINE L1 1705 2187 -4353 1607 155 101 57 chr1 144945884 144946196 -97718157 - L1MB4 LINE L1 0 6180 5883 5599 132 101 51 chr1 144946196 144946819 -97717534 - Tigger3b DNA MER2_type -1800 1228 637 1824 168 10 0 chr1 144946819 144947111 -97717242 + AluJb SINE Alu 1 295 -17 5599 132 101 51 chr1 144947111 144947317 -97717036 - Tigger3b DNA MER2_type -2391 637 443 2383 75 0 0 chr1 144947317 144947625 -97716728 - AluY SINE Alu 0 308 1 2027 120 14 0 chr1 144947633 144947916 -97716437 - AluSx SINE Alu -24 288 2 2148 113 3 46 chr1 144947926 144948252 -97716101 - AluSx SINE Alu 0 312 1 2222 104 13 10 chr1 144948260 144948569 -97715784 - AluSg SINE Alu 0 310 1 5599 132 101 51 chr1 144948569 144948877 -97715476 - Tigger3b DNA MER2_type -2605 423 2 1607 155 101 57 chr1 144948877 144948902 -97715451 - L1MB4 LINE L1 -297 5883 5861 2211 111 0 29 chr1 144948902 144949208 -97715145 + AluSp SINE Alu 1 297 -16 1607 155 101 57 chr1 144949208 144949237 -97715116 - L1MB4 LINE L1 -319 5861 5797 35 0 0 0 chr1 144949419 144949454 -97714899 + AT_rich Low_complexity Low_complexity 1 35 0 2190 79 11 4 chr1 144951771 144952098 -97712255 - AluY SINE Alu 0 329 1 707 216 0 0 chr1 144952247 144952391 -97711962 - FLAM_A SINE Alu 0 144 1 954 88 16 0 chr1 144952638 144952763 -97711590 + AluSp SINE Alu 6 132 -181 2219 69 3 56 chr1 144952974 144953293 -97711060 - AluY SINE Alu -9 302 1 193 286 0 0 chr1 144954682 144954731 -97709622 + L3 LINE CR1 1523 1571 -6 1113 122 37 0 chr1 144955117 144955281 -97709072 + AluSg/x SINE Alu 122 291 -21 1933 120 0 8 chr1 144955890 144956157 -97708196 - AluSq SINE Alu -18 295 31 874 123 75 57 chr1 144957904 144958131 -97706222 - AluSq SINE Alu -82 231 1 650 316 31 12 chr1 144958941 144959197 -97705156 - MIR SINE MIR 0 262 2 876 134 0 49 chr1 144959605 144959747 -97704606 - FLAM_C SINE Alu 0 143 9 910 114 0 8 chr1 144959963 144960094 -97704259 - FLAM_C SINE Alu 0 133 4 183 42 0 0 chr1 144960383 144960407 -97703946 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2242 103 0 7 chr1 144960409 144960709 -97703644 - AluSg SINE Alu -12 298 1 1840 159 0 10 chr1 144960709 144961010 -97703343 - AluSx SINE Alu -14 298 1 2281 93 0 13 chr1 144961017 144961318 -97703035 - AluY SINE Alu -14 297 1 1939 163 3 3 chr1 144961318 144961618 -97702735 - AluJb SINE Alu -12 300 1 355 195 11 35 chr1 144961687 144961774 -97702579 + MLT1F LTR MaLR 458 542 0 2602 49 0 7 chr1 144962286 144962591 -97701762 - AluY SINE Alu -8 303 1 2221 118 0 3 chr1 144962596 144962902 -97701451 - AluSc SINE Alu 0 309 5 2409 87 0 16 chr1 144963225 144963361 -97700992 + AluSx SINE Alu 1 138 -174 2511 60 10 3 chr1 144963361 144963662 -97700691 + AluY SINE Alu 1 303 -8 2409 87 0 16 chr1 144963662 144963837 -97700516 + AluSx SINE Alu 138 307 -5 315 0 0 0 chr1 144964600 144964635 -97699718 + (TG)n Simple_repeat Simple_repeat 2 36 0 2360 86 3 10 chr1 144964646 144964947 -97699406 - AluSx SINE Alu -13 299 1 1989 147 0 25 chr1 144966047 144966428 -97697925 - AluJb SINE Alu 0 373 1 184 339 0 0 chr1 144967252 144967317 -97697036 + MIR SINE MIR 89 153 -109 1948 134 3 16 chr1 144967411 144967716 -97696637 + AluSx SINE Alu 1 301 -11 1815 124 4 4 chr1 144967716 144967973 -97696380 + AluSg SINE Alu 44 301 -9 673 102 0 0 chr1 144967973 144968061 -97696292 + AluSc SINE Alu 2 89 -220 2151 127 0 13 chr1 144968062 144968370 -97695983 + AluSg SINE Alu 1 304 -6 1667 89 5 5 chr1 144968370 144968583 -97695770 + AluSc SINE Alu 80 293 -16 459 248 104 7 chr1 144968853 144969024 -97695329 - MER20B DNA MER1_type 0 219 32 1339 193 117 0 chr1 144970264 144970529 -97693824 + AluJb SINE Alu 1 296 -16 381 306 88 0 chr1 144970746 144970939 -97693414 + MIR SINE MIR 53 262 0 2547 61 0 0 chr1 144972069 144972365 -97691988 + AluY SINE Alu 1 296 -15 1548 76 11 0 chr1 144972370 144972586 -97691767 + AluSg/x SINE Alu 94 311 0 972 136 48 0 chr1 144972617 144972764 -97691589 + FRAM SINE Alu 7 160 -16 2176 108 20 0 chr1 144973063 144973359 -97690994 + AluSg SINE Alu 1 302 -8 1565 128 44 149 chr1 144973539 144973928 -97690425 + MER7A DNA MER2_type 1 346 0 188 140 0 100 chr1 144974660 144974710 -97689643 + MIR SINE MIR 118 162 -100 1269 182 10 0 chr1 144978217 144978426 -97685927 - AluJb SINE Alu -11 301 91 1995 138 3 10 chr1 144978450 144978755 -97685598 - AluJo SINE Alu -9 303 1 1201 101 12 0 chr1 144978772 144978941 -97685412 - AluSg/x SINE Alu 0 310 140 1981 84 0 4 chr1 144979081 144979332 -97685021 + AluSq SINE Alu 52 301 -12 574 204 32 32 chr1 144979452 144979609 -97684744 - MIR SINE MIR -28 234 78 434 266 101 0 chr1 144979606 144979742 -97684611 - MIR SINE MIR -63 145 36 * 2094 84 73 3 chr1 144979875 144980161 -97684192 + AluSp SINE Alu 1 306 -7 2238 112 3 7 chr1 144980352 144980655 -97683698 - AluSp SINE Alu -11 302 1 315 0 0 0 chr1 144980711 144980746 -97683607 + (TA)n Simple_repeat Simple_repeat 2 36 0 1587 156 36 40 chr1 144980757 144981058 -97683295 - AluJo SINE Alu -12 300 1 2372 88 0 3 chr1 144981158 144981465 -97682888 - AluY SINE Alu -5 306 1 1943 151 0 3 chr1 144981497 144981789 -97682564 - AluJb SINE Alu -19 293 3 293 292 161 16 chr1 144982957 144983200 -97681153 + L2 LINE L2 2240 2517 -797 1841 93 44 19 chr1 144983231 144983501 -97680852 - AluSq SINE Alu -4 309 33 531 83 14 0 chr1 144983517 144983589 -97680764 + Alu SINE Alu 2 74 -235 1410 103 5 5 chr1 144983689 144983883 -97680470 + AluY SINE Alu 106 299 -12 2082 125 10 0 chr1 144983890 144984179 -97680174 + AluSx SINE Alu 1 292 -20 1845 113 33 43 chr1 144984244 144984378 -97679975 + AluSx SINE Alu 1 135 -177 2223 99 3 3 chr1 144984378 144984670 -97679683 + AluSc SINE Alu 1 287 -22 1845 113 33 43 chr1 144984670 144984837 -97679516 + AluSx SINE Alu 135 299 -13 1385 111 0 53 chr1 144985455 144985680 -97678673 - AluJb SINE Alu -14 298 86 324 178 11 56 chr1 144985687 144985714 -97678639 - MER58 DNA MER1_type -17 2403 2376 1009 227 102 0 chr1 144985714 144985930 -97678423 - MER8 DNA MER2_type 0 239 2 324 178 11 56 chr1 144985930 144985992 -97678361 - MER58 DNA MER1_type -44 2376 2318 265 311 34 34 chr1 144987168 144987287 -97677066 - L2 LINE L2 -518 2796 2678 993 197 22 40 chr1 144993075 144993298 -97671055 - MER20 DNA MER1_type 0 219 1 374 264 215 0 chr1 144994105 144994249 -97670104 - MIR SINE MIR -9 253 79 1447 200 33 30 chr1 144995422 144995722 -97668631 - AluJo SINE Alu -11 301 1 192 333 40 0 chr1 144995781 144995856 -97668497 + MIR SINE MIR 72 149 -113 272 389 48 16 chr1 144996266 144996392 -97667961 + L2 LINE L2 3143 3272 0 2105 108 0 41 chr1 144996465 144996780 -97667573 - AluSx SINE Alu -10 302 1 639 234 8 8 chr1 144996810 144996938 -97667415 - FLAM_A SINE Alu -5 128 1 2222 105 0 0 chr1 144997009 144997303 -97667050 - AluSq SINE Alu -19 294 1 290 148 0 0 chr1 144997321 144997375 -97666978 - Alu SINE Alu 0 302 249 2290 90 0 22 chr1 144997387 144997562 -97666791 - AluSp SINE Alu -9 304 138 2448 70 0 16 chr1 144997562 144997878 -97666475 - AluY SINE Alu 0 311 1 2290 90 0 22 chr1 144997878 144998013 -97666340 - AluSp SINE Alu -175 138 1 21 0 0 0 chr1 144998475 144998496 -97665857 + AT_rich Low_complexity Low_complexity 1 21 0 1841 154 10 14 chr1 144998500 144998793 -97665560 + AluJb SINE Alu 1 292 -20 1550 179 34 10 chr1 144998797 144999094 -97665259 + AluJb SINE Alu 1 304 -8 192 229 21 0 chr1 144999094 144999142 -97665211 - MER5B DNA MER1_type -124 54 6 2088 107 0 30 chr1 144999150 144999449 -97664904 + AluSg SINE Alu 1 290 -20 583 247 75 11 chr1 145000030 145000216 -97664137 - Charlie8 DNA MER1_type -2165 252 55 2271 89 7 0 chr1 145000276 145000578 -97663775 - AluSp SINE Alu -9 304 1 1692 123 4 0 chr1 145001260 145001548 -97662805 - AluSx SINE Alu 0 327 39 2030 84 0 7 chr1 145001947 145002220 -97662133 - AluSg SINE Alu -39 271 1 2268 108 0 0 chr1 145002666 145002963 -97661390 + AluSx SINE Alu 1 297 -15 200 240 314 0 chr1 145003777 145003898 -97660455 - MIR3 SINE MIR -7 201 43 291 262 135 57 chr1 145004743 145004884 -97659469 + MIR SINE MIR 61 212 -50 2252 67 0 38 chr1 145004910 145005223 -97659130 + AluSg SINE Alu 1 301 -9 977 132 92 0 chr1 145005228 145005380 -97658973 + AluSx SINE Alu 16 181 -131 1186 140 115 0 chr1 145005380 145005580 -97658773 - AluSq SINE Alu -88 225 3 2104 119 51 3 chr1 145005583 145005936 -97658417 - MER41A LTR ERV1 -184 370 1 432 103 0 0 chr1 145005936 145006004 -97658349 + L1MB3 LINE L1 5866 5933 -250 456 110 33 44 chr1 145006004 145006064 -97658289 - MER51B LTR ERV1 0 377 317 1750 113 0 0 chr1 145006064 145006304 -97658049 + AluSg SINE Alu 1 240 -70 456 110 33 44 chr1 145006304 145006334 -97658019 - MER51B LTR ERV1 -60 317 288 1602 86 0 0 chr1 145006334 145006566 -97657787 + pTR5 LTR ERV1 162 393 -2045 262 264 36 0 chr1 145006571 145006681 -97657672 + (TG)n Simple_repeat Simple_repeat 1 114 0 1678 167 0 49 chr1 145007332 145007638 -97656715 + AluJb SINE Alu 1 291 -21 311 272 22 11 chr1 145007909 145008001 -97656352 + MIR SINE MIR 8 100 -162 2463 71 3 0 chr1 145059046 145059355 -97604998 + AluSp SINE Alu 1 310 -3 2185 99 3 0 chr1 145059839 145060133 -97604220 + AluSc SINE Alu 1 295 -14 207 254 167 0 chr1 145060782 145060896 -97603457 - L2 LINE L2 -216 3056 2924 29 0 0 0 chr1 145060944 145060973 -97603380 + AT_rich Low_complexity Low_complexity 1 29 0 1759 109 36 60 chr1 145060975 145061277 -97603076 - AluSx SINE Alu -17 295 1 2201 91 10 0 chr1 145063991 145064288 -97600065 + AluSg SINE Alu 1 300 -10 1995 135 0 0 chr1 145065780 145066101 -97598252 - AluSx SINE Alu 0 321 1 1372 206 22 42 chr1 145070163 145070474 -97593879 + AluJo SINE Alu 1 305 -7 208 281 389 0 chr1 145070583 145070722 -97593631 + L3 LINE CR1 1360 1552 -25 2156 69 0 60 chr1 145071131 145071448 -97592905 + AluSc SINE Alu 1 298 -11 655 329 31 0 chr1 145071451 145071679 -97592674 + MIR SINE MIR 28 262 0 1551 179 22 56 chr1 145071733 145071927 -97592426 + AluJo SINE Alu 1 181 -131 2228 102 16 0 chr1 145071927 145072230 -97592123 + AluSq SINE Alu 1 308 -5 1551 179 22 56 chr1 145072230 145072354 -97591999 + AluJo SINE Alu 181 308 -4 2287 112 3 0 chr1 145072761 145073073 -97591280 + AluSp SINE Alu 1 313 0 2417 72 0 3 chr1 145073078 145073385 -97590968 + AluY SINE Alu 1 306 -5 1327 54 0 0 chr1 145073385 145073545 -97590808 + AluY SINE Alu 133 292 -19 2210 105 0 16 chr1 145078055 145078190 -97586163 + AluSq SINE Alu 2 138 -175 2311 90 0 7 chr1 145078190 145078500 -97585853 + AluY SINE Alu 1 308 -3 2210 105 0 16 chr1 145078500 145078678 -97585675 + AluSq SINE Alu 138 310 -3 297 0 0 0 chr1 145078678 145078711 -97585642 + (TA)n Simple_repeat Simple_repeat 1 33 0 976 155 35 23 chr1 145078716 145078732 -97585621 + AluSg/x SINE Alu 121 135 -177 2055 116 0 0 chr1 145078732 145079038 -97585315 + AluSq SINE Alu 1 306 0 976 155 35 23 chr1 145079038 145079194 -97585159 + AluSg/x SINE Alu 135 296 -16 255 274 78 73 chr1 145080034 145080171 -97584182 - MIR SINE MIR -70 138 40 1780 74 11 45 chr1 145081326 145081494 -97582859 - AluSx SINE Alu -15 297 140 2147 49 6 86 chr1 145081494 145081820 -97582533 - AluY SINE Alu -9 302 3 1780 74 11 45 chr1 145081820 145081920 -97582433 - AluSx SINE Alu -172 140 38 2058 126 3 13 chr1 145082028 145082338 -97582015 + AluSx SINE Alu 2 308 -4 2078 109 3 3 chr1 145082402 145082695 -97581658 + AluSx SINE Alu 4 296 -16 295 286 94 35 chr1 145084011 145084182 -97580171 + MIR SINE MIR 14 194 -68 1228 290 220 17 chr1 145084182 145084268 -97580085 + L2 LINE L2 1630 1697 -1616 2028 153 3 0 chr1 145084268 145084576 -97579777 + AluJb SINE Alu 1 309 -3 1228 290 220 17 chr1 145084576 145085660 -97578693 + L2 LINE L2 1697 3181 -132 2082 102 6 34 chr1 145085660 145085982 -97578371 - AluSq SINE Alu 0 313 1 1228 290 220 17 chr1 145085982 145086136 -97578217 + L2 LINE L2 3181 3303 -10 519 92 0 0 chr1 145086551 145086638 -97577715 + (TC)n Simple_repeat Simple_repeat 1 87 0 2015 81 7 7 chr1 145086993 145087307 -97577046 - AluSg SINE Alu 0 314 1 799 82 18 0 chr1 145087542 145087652 -97576701 + AluSg/x SINE Alu 197 308 -4 1705 182 10 0 chr1 145087655 145087952 -97576401 + AluJb SINE Alu 1 300 -12 545 268 119 0 chr1 145088326 145088520 -97575833 - MIR SINE MIR -33 229 13 1820 110 103 0 chr1 145088525 145088798 -97575555 + AluSx SINE Alu 1 301 -11 2044 126 3 0 chr1 145088903 145089204 -97575149 + AluSx SINE Alu 9 310 -2 186 143 29 0 chr1 145090879 145090914 -97573439 + L2 LINE L2 3276 3311 -2 2128 130 0 0 chr1 145090934 145091234 -97573119 - AluSx SINE Alu -12 300 1 1869 151 0 43 chr1 145091842 145092167 -97572186 - AluSx SINE Alu 0 312 2 2224 94 0 3 chr1 145092173 145092470 -97571883 - AluSg SINE Alu -5 305 10 1983 119 33 3 chr1 145093483 145093786 -97570567 - AluSq SINE Alu -1 312 1 1842 134 7 23 chr1 145094245 145094551 -97569802 + AluSx SINE Alu 1 301 -11 303 235 0 0 chr1 145094590 145094641 -97569712 + L1MC4 LINE L1 6652 6702 -1340 998 173 30 0 chr1 145094656 145094824 -97569529 + AluJb SINE Alu 125 297 -15 240 35 0 0 chr1 145097926 145097955 -97566398 + (CCCCAG)n Simple_repeat Simple_repeat 3 31 0 248 234 16 16 chr1 145099314 145099378 -97564975 + MIR SINE MIR 90 153 -109 551 310 27 21 chr1 145099610 145099797 -97564556 - MIR3 SINE MIR -16 192 5 203 279 115 0 chr1 145100081 145100142 -97564211 + L2 LINE L2 3200 3267 -5 744 286 194 62 chr1 145100455 145100868 -97563485 + L2 LINE L2 1692 2049 -1264 2307 95 0 16 chr1 145100868 145101184 -97563169 - AluY SINE Alu 0 311 1 1921 120 3 13 chr1 145101188 145101497 -97562856 - AluSc SINE Alu -3 306 1 2036 130 0 0 chr1 145101502 145101786 -97562567 - AluSx SINE Alu -17 295 12 744 286 194 62 chr1 145101786 145101994 -97562359 + L2 LINE L2 2054 2233 -1080 2023 93 24 7 chr1 145101994 145102285 -97562068 - AluSq SINE Alu -17 296 1 744 286 194 62 chr1 145102285 145102835 -97561518 + L2 LINE L2 2233 2709 -604 1888 134 0 7 chr1 145102835 145103147 -97561206 - AluSx SINE Alu 0 310 1 744 286 194 62 chr1 145103147 145103246 -97561107 + L2 LINE L2 2709 3222 -91 203 242 8 142 chr1 145104220 145104340 -97560013 - L2 LINE L2 0 3272 3169 598 191 9 0 chr1 145104444 145104554 -97559799 + FLAM_A SINE Alu 32 142 0 190 356 56 0 chr1 145104625 145104715 -97559638 - L2 LINE L2 -230 3042 2948 793 258 59 8 chr1 145104760 145105016 -97559337 + L2 LINE L2 2632 2900 -414 1688 118 47 75 chr1 145105019 145105418 -97558935 - AluSx SINE Alu 0 390 1 1307 197 111 0 chr1 145105427 145105706 -97558647 - AluJb SINE Alu -2 310 1 1972 117 0 3 chr1 145105793 145106121 -97558232 + AluSx SINE Alu 1 327 0 213 279 66 0 chr1 145106232 145106293 -97558060 - L2 LINE L2 0 3272 3208 485 232 56 16 chr1 145106298 145106423 -97557930 - FLAM_A SINE Alu -3 130 1 2380 75 3 0 chr1 145106636 145106941 -97557412 - AluY SINE Alu -5 306 1 1729 185 37 0 chr1 145107156 145107454 -97556899 + AluJo SINE Alu 1 309 -3 1406 166 102 11 chr1 145107565 145107830 -97556523 + AluJo SINE Alu 9 297 -15 1991 107 9 47 chr1 145108214 145108532 -97555821 - AluY SINE Alu -5 306 1 24 0 0 0 chr1 145108553 145108577 -97555776 + AT_rich Low_complexity Low_complexity 1 24 0 776 178 7 7 chr1 145108577 145108712 -97555641 - AluJo SINE Alu -177 135 1 525 241 54 18 chr1 145108850 145109016 -97555337 + MER20B DNA MER1_type 30 201 -582 2079 125 0 0 chr1 145109102 145109398 -97554955 + AluSx SINE Alu 1 296 -16 385 158 18 35 chr1 145109398 145109512 -97554841 + GA-rich Low_complexity Low_complexity 1 112 0 1734 158 35 0 chr1 145109673 145109957 -97554396 - AluSx SINE Alu -18 294 1 706 235 8 0 chr1 145110006 145110138 -97554215 + AluJo SINE Alu 4 136 -176 2372 62 7 0 chr1 145110138 145110430 -97553923 + AluY SINE Alu 1 294 -17 2159 105 10 0 chr1 145110661 145110965 -97553388 + AluSx SINE Alu 1 307 -5 542 280 103 0 chr1 145111130 145111305 -97553048 - MIR SINE MIR -33 229 37 211 257 147 28 chr1 145111347 145111456 -97552897 - MIR SINE MIR -36 226 105 181 0 33 33 chr1 145112056 145112086 -97552267 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 186 143 29 0 chr1 145113100 145113135 -97551218 + L2 LINE L2 3276 3311 -2 1650 173 3 23 chr1 145115183 145115489 -97548864 + AluJo SINE Alu 1 300 -12 240 35 0 0 chr1 145118537 145118566 -97545787 + (CCCCAG)n Simple_repeat Simple_repeat 3 31 0 248 234 16 16 chr1 145119925 145119989 -97544364 + MIR SINE MIR 90 153 -109 543 316 27 21 chr1 145120224 145120411 -97543942 - MIR3 SINE MIR -16 192 5 213 222 111 16 chr1 145120661 145120724 -97543629 + L2 LINE L2 3200 3268 -4 203 325 185 19 chr1 145121118 145121275 -97543078 - MIR SINE MIR -6 256 74 21 0 0 0 chr1 145121427 145121448 -97542905 + AT_rich Low_complexity Low_complexity 1 21 0 380 292 64 29 chr1 145121709 145121880 -97542473 - MIR3 SINE MIR -16 192 16 22 56 0 0 chr1 145122316 145122352 -97542001 + GC_rich Low_complexity Low_complexity 1 36 0 231 207 17 0 chr1 145122656 145122714 -97541639 + G-rich Low_complexity Low_complexity 1 59 0 183 258 56 45 chr1 145123291 145123380 -97540973 - L2 LINE L2 -656 2658 2569 2185 89 0 80 chr1 145124528 145124866 -97539487 - AluSq SINE Alu -2 311 1 2061 141 0 0 chr1 145125610 145125901 -97538452 - AluSx SINE Alu -21 291 1 1922 123 24 3 chr1 145126797 145127089 -97537264 - AluSq SINE Alu -15 298 1 2002 125 0 7 chr1 145127260 145127555 -97536798 + AluSx SINE Alu 4 296 -16 449 295 77 15 chr1 145129550 145129745 -97534608 + MIR SINE MIR 27 232 -30 2060 118 10 3 chr1 145131618 145131915 -97532438 - AluSx SINE Alu -8 304 6 2485 61 0 0 chr1 145131966 145132263 -97532090 - AluY SINE Alu -14 297 1 2082 95 25 0 chr1 145132266 145132550 -97531803 - AluSx SINE Alu -19 293 3 5907 156 24 9 chr1 145334040 145335683 -97328670 + L1PB1 LINE L1 4129 5803 -348 189 0 0 0 chr1 145335683 145335704 -97328649 + (TG)n Simple_repeat Simple_repeat 2 22 0 5907 156 24 9 chr1 145335704 145336052 -97328301 + L1PB1 LINE L1 5803 6144 -7 242 266 27 71 chr1 145336152 145336336 -97328017 - L1ME4a LINE L1 -106 6015 5840 1971 103 30 0 chr1 145336451 145336742 -97327611 - AluSp SINE Alu 0 303 5 597 316 37 22 chr1 145336748 145337017 -97327336 - L1MC4a LINE L1 -1983 5825 5553 5461 173 25 9 chr1 145337027 145338210 -97326143 + L1MA6 LINE L1 5105 6300 0 23 0 0 0 chr1 145338299 145338322 -97326031 + AT_rich Low_complexity Low_complexity 1 23 0 1217 126 16 6 chr1 145338790 145338973 -97325380 + LTR26 LTR ERV1 381 565 -38 191 284 173 0 chr1 145339018 145339099 -97325254 - MIR SINE MIR -160 102 8 201 215 159 37 chr1 145340104 145340211 -97324142 + MER5A DNA MER1_type 1 120 -69 211 315 45 9 chr1 145340319 145340430 -97323923 - L3 LINE CR1 -69 1508 1394 692 237 16 16 chr1 145340502 145340685 -97323668 - L1ME1 LINE L1 -140 6026 5841 1795 138 80 28 chr1 145340685 145341011 -97323342 + MER61A LTR ERV1 1 343 0 20859 117 38 20 chr1 145341017 145341468 -97322885 + HUERS-P3b LTR ERV1 7 448 -4769 221 28 83 0 chr1 145341468 145341504 -97322849 + T-rich Low_complexity Low_complexity 2 40 0 20859 117 38 20 chr1 145341504 145343062 -97321291 + HUERS-P3b LTR ERV1 448 1976 -3241 5888 64 21 1 chr1 145343062 145343813 -97320540 - MER4E LTR ERV1 0 766 1 20859 117 38 20 chr1 145343813 145344935 -97319418 + HUERS-P3b LTR ERV1 1976 3076 -2141 2610 68 0 0 chr1 145344935 145345246 -97319107 + AluY SINE Alu 1 311 0 20859 117 38 20 chr1 145345246 145346284 -97318069 + HUERS-P3b LTR ERV1 3076 5217 0 1823 122 82 12 chr1 145346285 145346604 -97317749 + MER61A LTR ERV1 2 342 -1 1100 224 13 39 chr1 145346605 145346913 -97317440 - L1ME1 LINE L1 -315 5849 5550 2558 136 16 21 chr1 145347674 145348101 -97316252 - MSTA LTR MaLR 0 428 4 2145 121 6 16 chr1 145348290 145348605 -97315748 - AluSx SINE Alu 0 312 1 363 318 169 0 chr1 145349413 145349614 -97314739 + MIR SINE MIR 2 236 -26 1126 277 88 44 chr1 145349756 145350594 -97313759 + L2 LINE L2 2210 3313 0 281 339 16 0 chr1 145350977 145351104 -97313249 + L3 LINE CR1 1425 1553 -24 2478 63 3 0 chr1 145352001 145352300 -97312053 - AluY SINE Alu -11 300 1 234 209 182 45 chr1 145352477 145352609 -97311744 - MIR SINE MIR -67 141 16 330 219 184 9 chr1 145352673 145352787 -97311566 + MIR SINE MIR 13 146 -116 265 220 0 0 chr1 145352787 145352837 -97311516 + PABL_B LTR ERV1 1 50 -617 908 295 62 58 chr1 145352865 145353506 -97310847 + PABL_B LTR ERV1 24 667 0 242 322 25 8 chr1 145353506 145353624 -97310729 + MIR SINE MIR 143 262 0 1242 246 107 25 chr1 145353953 145354356 -97309997 + MLT2B2 LTR ERVL 1 436 -79 332 125 0 0 chr1 145354744 145354792 -97309561 - MLT2D LTR ERVL 0 414 367 212 323 0 0 chr1 145354846 145354911 -97309442 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 707 237 163 71 chr1 145354912 145355207 -97309146 - MLT2B1 LTR ERVL -50 470 149 510 201 181 0 chr1 145356131 145356275 -97308078 + MER5A DNA MER1_type 14 183 -6 180 97 0 0 chr1 145356413 145356444 -97307909 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 422 268 56 34 chr1 145357754 145357933 -97306420 + MIR SINE MIR 21 203 -59 190 250 0 0 chr1 145357985 145358033 -97306320 - MIR SINE MIR -12 250 203 21 36 0 0 chr1 145358200 145358228 -97306125 + AT_rich Low_complexity Low_complexity 1 28 0 476 240 158 12 chr1 145358321 145358492 -97305861 + MIR SINE MIR 8 203 -59 973 218 46 28 chr1 145358855 145359313 -97305040 + MLT1D LTR MaLR 3 505 0 1244 228 82 15 chr1 145359323 145359665 -97304688 + MLT1A1 LTR MaLR 1 365 0 210 317 98 8 chr1 145360539 145360662 -97303691 - MIR SINE MIR -76 186 53 518 279 75 27 chr1 145362996 145363317 -97301036 + L1ME LINE L1 5303 5641 -480 532 176 0 0 chr1 145363320 145363405 -97300948 + AluJ/FLAM SINE Alu 2 86 -226 547 303 14 23 chr1 145363927 145364156 -97300197 + MIR SINE MIR 37 261 -1 339 331 20 20 chr1 145364908 145365056 -97299297 - MIR3 SINE MIR -7 201 54 250 310 40 0 chr1 145366589 145366689 -97297664 - L2 LINE L2 -12 3301 3198 27 0 0 0 chr1 145367955 145367982 -97296371 + AT_rich Low_complexity Low_complexity 1 27 0 214 344 73 26 chr1 145368081 145368273 -97296080 + L2 LINE L2 2623 2823 -491 23 54 0 0 chr1 145368712 145368749 -97295604 + AT_rich Low_complexity Low_complexity 1 37 0 209 294 20 98 chr1 145370196 145370349 -97294004 - L2 LINE L2 -175 3097 2957 189 298 21 64 chr1 145370641 145370829 -97293524 - L2 LINE L2 -1225 2089 1910 595 217 108 0 chr1 145370845 145371002 -97293351 + MIR SINE MIR 20 193 -69 1704 161 126 120 chr1 145371808 145372466 -97291887 - MER4A LTR ERV1 -2 662 1 2210 113 3 0 chr1 145373497 145373788 -97290565 - AluSg SINE Alu -18 292 1 289 348 68 48 chr1 145374104 145374414 -97289939 - L2 LINE L2 0 3272 2957 2318 101 7 0 chr1 145374874 145375170 -97289183 + AluSx SINE Alu 1 298 -14 579 244 128 0 chr1 145375215 145375379 -97288974 + MIR SINE MIR 20 204 -58 396 291 27 0 chr1 145377481 145377591 -97286762 + L2 LINE L2 3147 3259 -13 670 250 139 47 chr1 145377866 145378199 -97286154 + HAL1b LINE L1 324 714 -634 516 223 46 46 chr1 145378199 145378374 -97285979 + MER5B DNA MER1_type 4 178 0 670 250 139 47 chr1 145378374 145378508 -97285845 + HAL1b LINE L1 714 834 -514 23 0 0 0 chr1 145378787 145378810 -97285543 + AT_rich Low_complexity Low_complexity 1 23 0 240 250 0 0 chr1 145378846 145378898 -97285455 + L1P4 LINE L1 5512 5563 -600 5555 172 11 20 chr1 145378899 145380097 -97284256 - L1MA6 LINE L1 0 6300 5105 524 346 30 15 chr1 145380107 145380376 -97283977 + L1MC4a LINE L1 5553 5825 -1983 256 229 57 0 chr1 145380378 145380448 -97283905 + L1ME3 LINE L1 6082 6155 -7 252 290 16 70 chr1 145380487 145380673 -97283680 + L1ME4a LINE L1 5840 6015 -106 365 78 31 31 chr1 145380764 145380828 -97283525 - L1PB1 LINE L1 0 6151 6088 236 299 37 30 chr1 145381111 145381245 -97283108 - MER5A DNA MER1_type -2 187 53 * 344 303 0 18 chr1 145381143 145381252 -97283101 + MER5A DNA MER1_type 47 153 -36 191 222 0 14 chr1 145381363 145381435 -97282918 + GA-rich Low_complexity Low_complexity 2 72 0 429 274 122 28 chr1 145381636 145381924 -97282429 + L1ME4a LINE L1 5742 6056 -65 22 0 0 0 chr1 145381957 145381979 -97282374 + AT_rich Low_complexity Low_complexity 1 22 0 426 303 102 28 chr1 145383292 145383576 -97280777 - L1MEc LINE L1 -3382 2833 2529 2140 182 20 0 chr1 145383625 145383983 -97280370 + MLT1A1 LTR MaLR 1 365 0 319 303 98 40 chr1 145384036 145384412 -97279941 - L1MEc LINE L1 -4099 2297 1900 22 0 0 0 chr1 145384405 145384427 -97279926 + AT_rich Low_complexity Low_complexity 1 22 0 * 23 0 0 0 chr1 145384884 145384907 -97279446 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 145386015 145386043 -97278310 + AT_rich Low_complexity Low_complexity 1 28 0 269 333 82 34 chr1 145387926 145388073 -97276280 + MIR SINE MIR 63 216 -46 23 0 0 0 chr1 145388073 145388096 -97276257 + AT_rich Low_complexity Low_complexity 1 23 0 585 237 97 53 chr1 145388732 145388960 -97275393 + L3 LINE CR1 1337 1574 -3 266 177 13 114 chr1 145390747 145390792 -97273561 + MER5B DNA MER1_type 98 133 -45 1455 52 0 0 chr1 145390792 145390964 -97273389 + AluY SINE Alu 140 311 0 266 177 13 114 chr1 145390964 145390997 -97273356 + MER5B DNA MER1_type 133 168 -10 510 281 56 0 chr1 145391387 145391565 -97272788 + L1M4 LINE L1 4701 4888 -1258 373 201 24 53 chr1 145391558 145391727 -97272626 + L1M4 LINE L1 2799 2962 -3184 * 1824 217 67 14 chr1 145391723 145392522 -97271831 + L1M4 LINE L1 4963 5803 -381 1811 234 33 54 chr1 145392520 145393424 -97270929 - L1M4 LINE L1 -3005 3377 2124 * 26 0 0 0 chr1 145393431 145393457 -97270896 + AT_rich Low_complexity Low_complexity 1 26 0 345 288 120 60 chr1 145393600 145393850 -97270503 + L2 LINE L2 346 610 -2704 980 256 39 12 chr1 145394609 145394863 -97269490 - MIR SINE MIR 0 262 2 362 298 249 26 chr1 145394863 145394890 -97269463 + L2 LINE L2 1316 1330 -1984 1468 192 18 73 chr1 145394890 145395061 -97269292 + MLT1A2 LTR MaLR 1 180 -194 216 0 0 0 chr1 145395061 145395085 -97269268 + (TC)n Simple_repeat Simple_repeat 1 24 0 1468 192 18 73 chr1 145395085 145395309 -97269044 + MLT1A2 LTR MaLR 180 374 0 362 298 249 26 chr1 145395309 145396237 -97268116 + L2 LINE L2 1330 2489 -825 223 258 30 0 chr1 145396952 145397018 -97267335 + (CA)n Simple_repeat Simple_repeat 2 69 0 1781 164 101 14 chr1 145397564 145397911 -97266442 + MSTB LTR MaLR 50 426 0 569 206 19 19 chr1 145397925 145398085 -97266268 - L1M4 LINE L1 -1890 4256 4097 1846 263 66 10 chr1 145398092 145398893 -97265460 - L1M4 LINE L1 -2983 3163 2318 5248 185 16 3 chr1 145398908 145400551 -97263802 - L1MA4 LINE L1 -6 6294 4630 2451 109 5 11 chr1 145400551 145400927 -97263426 - L1PB2 LINE L1 -2 7568 7195 554 134 31 0 chr1 145400938 145401065 -97263288 + (TA)n Simple_repeat Simple_repeat 2 132 0 3292 155 5 9 chr1 145401065 145401955 -97262398 - L1PB2 LINE L1 -360 7210 6322 * 4030 33 5 2 chr1 145401926 145402509 -97261844 - L1P1 LINE L1 -372 7202 6618 * 9409 29 0 0 chr1 145402505 145403697 -97260656 + L1P LINE L1 2877 4068 -2078 3398 198 8 1 chr1 145403693 145404444 -97259909 - L1PB2 LINE L1 -1969 5596 4841 * 1956 214 35 2 chr1 145404436 145404923 -97259430 - L1PB2 LINE L1 -3149 4416 3914 * 2137 235 51 91 chr1 145404960 145406084 -97258269 - L1PB2 LINE L1 -4576 2989 1911 351 402 0 43 chr1 145406548 145406899 -97257454 - L1PB2 LINE L1 -5503 1983 1648 234 218 11 35 chr1 145406951 145407038 -97257315 - L1MEc LINE L1 -3959 2437 2353 502 233 23 0 chr1 145407608 145407737 -97256616 - MLT1H LTR MaLR -406 143 12 1700 271 64 24 chr1 145407745 145408975 -97255378 + Charlie8 DNA MER1_type 1064 2415 -2 945 263 61 61 chr1 145409484 145409572 -97254781 - MER115 DNA AcHobo -3 690 603 2345 68 0 3 chr1 145409572 145409866 -97254487 + AluY SINE Alu 1 293 -18 945 263 61 61 chr1 145409866 145410168 -97254185 - MER115 DNA AcHobo -89 604 300 316 270 9 9 chr1 145410178 145410289 -97254064 + L1MC4 LINE L1 7932 8042 0 2994 219 91 10 chr1 145410928 145411796 -97252557 + L1MC3 LINE L1 6688 7625 -160 368 240 66 0 chr1 145411796 145411917 -97252436 + L1MD3 LINE L1 7709 7837 -158 957 217 36 32 chr1 145411917 145412198 -97252155 + L1MD3 LINE L1 7709 7990 -5 384 293 111 30 chr1 145412819 145413017 -97251336 - MIR SINE MIR -45 217 4 400 320 107 44 chr1 145413447 145413653 -97250700 + L2 LINE L2 3015 3233 -39 441 54 0 0 chr1 145413686 145413742 -97250611 + (TA)n Simple_repeat Simple_repeat 1 56 0 340 123 31 0 chr1 145413831 145413896 -97250457 - L1PA10 LINE L1 0 6168 6102 757 256 54 25 chr1 145415807 145416049 -97248304 - MIR SINE MIR -13 249 1 452 295 127 6 chr1 145416167 145416333 -97248020 - MIR SINE MIR -69 193 8 2063 137 7 3 chr1 145417624 145417924 -97246429 + AluSx SINE Alu 1 301 -11 2208 193 73 10 chr1 145419069 145419575 -97244778 - MER67C LTR ERV1 -4 706 122 6979 60 17 2 chr1 145419575 145420963 -97243390 - L1PA6 LINE L1 0 6154 4757 2208 193 73 10 chr1 145420963 145421083 -97243270 - MER67C LTR ERV1 -588 122 11 271 259 12 12 chr1 145421444 145421529 -97242824 + MER34 LTR ERV1 1 85 -457 873 224 133 22 chr1 145421537 145421960 -97242393 + LTR29 LTR ERV1 137 595 0 2194 119 0 0 chr1 145422011 145422305 -97242048 + AluY SINE Alu 5 298 -13 1182 195 90 68 chr1 145422305 145422409 -97241944 - MER34C LTR ERV1 -72 513 413 836 196 167 10 chr1 145422409 145422613 -97241740 + MER46A DNA MER2_type 1 236 0 1182 195 90 68 chr1 145422613 145422975 -97241378 - MER34C LTR ERV1 -172 413 37 1107 89 11 17 chr1 145427398 145427578 -97236775 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 203 182 0 0 chr1 145427578 145427611 -97236742 + polypurine Low_complexity Low_complexity 3 35 0 847 276 159 12 chr1 145427642 145427975 -97236378 + L2 LINE L2 1749 2130 -1184 1383 167 0 29 chr1 145428274 145428513 -97235840 - AluJo SINE Alu -16 296 65 270 300 0 0 chr1 145428795 145428865 -97235488 - MIR SINE MIR -36 226 157 1591 212 16 37 chr1 145429065 145429447 -97234906 - MLT1A2 LTR MaLR 0 374 1 628 198 275 0 chr1 145429604 145429771 -97234582 - MIR SINE MIR -30 232 20 570 278 77 17 chr1 145430316 145430550 -97233803 + L2 LINE L2 3066 3313 0 459 0 0 0 chr1 145433073 145433124 -97231229 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1934 132 0 0 chr1 145433124 145433389 -97230964 - AluSx SINE Alu -47 265 1 1206 187 0 10 chr1 145433451 145433654 -97230699 - AluJb SINE Alu -27 285 85 563 223 29 14 chr1 145434386 145434525 -97229828 - L2 LINE L2 0 3313 3173 194 319 0 0 chr1 145434639 145434686 -97229667 - L2 LINE L2 -12 3301 3255 252 143 0 0 chr1 145434687 145434729 -97229624 + (TA)n Simple_repeat Simple_repeat 2 43 0 891 283 139 44 chr1 145434729 145435227 -97229126 - L1MEc LINE L1 -5571 825 281 329 206 130 11 chr1 145435286 145435378 -97228975 - L1MEc LINE L1 -6245 151 49 284 296 153 0 chr1 145435908 145436006 -97228347 - MIR3 SINE MIR -85 123 11 225 229 229 17 chr1 145437822 145437940 -97226413 - LTR67 LTR ERVL -7 550 408 351 297 82 43 chr1 145437986 145438218 -97226135 + L1MC4a LINE L1 6500 6740 -1068 573 276 55 20 chr1 145438374 145438628 -97225725 + L1MC5 LINE L1 7234 7496 -465 611 187 0 30 chr1 145438667 145438801 -97225552 + L1MA4 LINE L1 6136 6265 -35 421 206 73 148 chr1 145438804 145439285 -97225068 + L1MC5 LINE L1 7473 7917 -44 905 280 130 40 chr1 145439291 145440002 -97224351 + L2 LINE L2 2528 3313 0 2339 293 99 15 chr1 145440005 145441303 -97223050 - ERVL LTR ERVL -1363 4401 2957 2124 64 75 3 chr1 145441955 145442237 -97222116 + AluY SINE Alu 1 302 -9 440 262 123 21 chr1 145442355 145442542 -97221811 - LTR67 LTR ERVL 0 557 352 378 0 0 0 chr1 145442904 145442946 -97221407 + (TG)n Simple_repeat Simple_repeat 2 43 0 353 316 45 45 chr1 145442976 145443152 -97221201 + MIR SINE MIR 3 181 -62 * 914 326 25 22 chr1 145443132 145443537 -97220816 + L2 LINE L2 2900 3305 -8 266 244 103 0 chr1 145443536 145443614 -97220739 + MIR SINE MIR 175 260 -2 * 702 285 137 3 chr1 145443964 145444248 -97220105 - MLT1J2 LTR MaLR -128 322 1 240 270 87 76 chr1 145444294 145444479 -97219874 + MIR SINE MIR 10 196 -66 612 52 0 0 chr1 145444482 145444559 -97219794 - Alu SINE Alu -12 297 221 253 359 157 28 chr1 145444752 145445217 -97219136 - L2 LINE L2 -371 2943 2419 2266 104 3 0 chr1 145445635 145445933 -97218420 + AluY SINE Alu 1 299 -12 4138 185 94 30 chr1 145446285 145447262 -97217091 - MER45B DNA AcHobo 0 1040 1 493 335 101 9 chr1 145447548 145447775 -97216578 - MIR SINE MIR -4 258 11 1819 164 0 24 chr1 145447782 145448080 -97216273 - AluJb SINE Alu -21 291 1 1835 185 0 0 chr1 145448769 145449072 -97215281 - AluJb SINE Alu -6 306 4 1065 205 80 52 chr1 145449144 145449432 -97214921 + L1MB7 LINE L1 5825 6120 -58 407 274 100 47 chr1 145449579 145449769 -97214584 - MIR SINE MIR -50 212 13 283 307 44 117 chr1 145450384 145450589 -97213764 + MIR SINE MIR 73 262 0 211 104 42 0 chr1 145450661 145450709 -97213644 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 307 320 50 33 chr1 145451615 145451796 -97212557 + L1MEd LINE L1 967 1150 -4969 476 249 82 67 chr1 145451805 145451925 -97212428 + HAL1b LINE L1 239 356 -992 1727 153 4 0 chr1 145451925 145452186 -97212167 + AluSx SINE Alu 36 297 -15 476 249 82 67 chr1 145452186 145452395 -97211958 + HAL1b LINE L1 356 573 -775 607 270 17 34 chr1 145452441 145452678 -97211675 + HAL1b LINE L1 698 930 -418 5023 33 7 0 chr1 145453067 145453665 -97210688 + L1PA4 LINE L1 5550 6151 -4 2194 112 0 0 chr1 145453845 145454139 -97210214 - AluY SINE Alu -17 294 1 259 336 68 38 chr1 145454295 145454560 -97209793 - MLT1I LTR MaLR -38 371 99 247 148 0 66 chr1 145454883 145454944 -97209409 - MLT1G1 LTR MaLR -5 590 534 2304 264 64 20 chr1 145455097 145456220 -97208133 + L1MEd LINE L1 2339 3511 -2618 6616 22 4 0 chr1 145456227 145456997 -97207356 - L1PA3 LINE L1 0 6155 5383 3293 266 68 30 chr1 145457013 145457735 -97206618 + L1MEd LINE L1 3517 4210 -1943 2278 108 0 0 chr1 145457735 145458031 -97206322 + AluSq SINE Alu 1 296 -17 3293 266 68 30 chr1 145458031 145459423 -97204930 + L1MEd LINE L1 4210 5712 -441 273 305 107 15 chr1 145460010 145460207 -97204146 - L1ME LINE L1 -296 5825 5611 26 30 0 0 chr1 145461120 145461153 -97203200 + AT_rich Low_complexity Low_complexity 1 33 0 344 295 259 16 chr1 145461563 145461756 -97202597 + MIR SINE MIR 17 256 -6 267 286 105 29 chr1 145461859 145461964 -97202389 + L2 LINE L2 3201 3313 0 417 299 103 6 chr1 145462112 145462286 -97202067 - L2 LINE L2 -8 3305 3115 244 317 188 20 chr1 145462460 145462662 -97201691 + L2 LINE L2 2623 2858 -456 219 173 0 39 chr1 145462839 145462891 -97201462 + (CA)n Simple_repeat Simple_repeat 2 51 0 276 130 0 0 chr1 145463058 145463104 -97201249 + (TA)n Simple_repeat Simple_repeat 2 47 0 4216 41 0 0 chr1 145463375 145463885 -97200468 - L1PA4 LINE L1 0 6155 5646 446 371 48 11 chr1 145464003 145464189 -97200164 - L2 LINE L2 0 3272 3080 236 275 65 49 chr1 145464536 145464755 -97199598 - L1MC/D LINE L1 -662 5580 5482 358 234 13 0 chr1 145464808 145464885 -97199468 - L2 LINE L2 0 3313 3236 32 81 0 0 chr1 145465164 145465238 -97199115 + AT_rich Low_complexity Low_complexity 1 74 0 358 293 182 29 chr1 145465316 145465729 -97198624 - L1MC/D LINE L1 -1303 4843 4368 350 326 99 29 chr1 145465927 145466200 -97198153 - L1MC/D LINE L1 -1938 4208 3917 1679 179 41 0 chr1 145466236 145466527 -97197826 - AluJb SINE Alu -4 308 6 298 350 138 8 chr1 145467267 145467390 -97196963 - L2 LINE L2 0 3272 3134 293 143 20 0 chr1 145467587 145467636 -97196717 + MIR SINE MIR 183 232 -30 2407 323 43 10 chr1 145468768 145469633 -97194720 + ERVL LTR ERVL 2926 3818 -1946 719 271 48 0 chr1 145470056 145470244 -97194109 - MIR SINE MIR -3 259 63 258 242 15 0 chr1 145470361 145470427 -97193926 + MLT1K LTR MaLR 512 578 -10 378 0 0 0 chr1 145471553 145471595 -97192758 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 759 167 0 15 chr1 145471595 145471718 -97192635 - FLAM_C SINE Alu -189 123 1 302 221 148 25 chr1 145472714 145472836 -97191517 + L1ME4a LINE L1 5751 5887 -234 1957 272 79 47 chr1 145473016 145474448 -97189905 + L1ME LINE L1 498 1883 -4657 1612 100 5 0 chr1 145474448 145474668 -97189685 + AluSq SINE Alu 81 301 -12 1957 272 79 47 chr1 145474668 145476009 -97188344 + L1ME LINE L1 1883 3347 -3193 278 213 39 39 chr1 145475992 145476119 -97188234 + L1ME LINE L1 2406 2532 -4008 * 270 261 0 0 chr1 145476124 145476189 -97188164 + L1ME LINE L1 3356 3420 -3120 * 1884 142 50 32 chr1 145476185 145476830 -97187523 + L1M2 LINE L1 4936 5607 -693 1951 104 0 0 chr1 145476830 145477090 -97187263 + AluSq SINE Alu 1 260 -53 801 281 74 23 chr1 145477125 145477556 -97186797 + L1M4 LINE L1 4799 5251 -895 1583 227 16 26 chr1 145477562 145477949 -97186404 - MER88 LTR ERVL 0 464 82 324 307 6 17 chr1 145478035 145478211 -97186142 + L1M4 LINE L1 4882 5055 -1091 5778 157 24 24 chr1 145478229 145480044 -97184309 - L1MA4 LINE L1 -11 7708 5885 * 18334 127 39 21 chr1 145480036 145481844 -97182509 + L1P3 LINE L1 1148 2922 -4662 190 0 67 0 chr1 145481844 145481874 -97182479 + (CAA)n Simple_repeat Simple_repeat 2 33 0 18334 127 39 21 chr1 145481874 145483264 -97181089 + L1P3 LINE L1 2922 5187 -2397 8597 218 68 32 chr1 145483258 145483476 -97180877 - L1MA4 LINE L1 -1674 5891 5682 * 1046 81 17 17 chr1 145483476 145483649 -97180704 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 8597 218 68 32 chr1 145483649 145484586 -97179767 - L1MA4 LINE L1 -1883 5682 4780 1534 206 10 13 chr1 145484586 145484897 -97179456 + AluJo SINE Alu 3 312 0 8597 218 68 32 chr1 145484897 145485373 -97178980 - L1MA4 LINE L1 -2785 4780 4322 2579 33 7 3 chr1 145485373 145485678 -97178675 + AluY SINE Alu 1 306 -5 8597 218 68 32 chr1 145485678 145486891 -97177462 - L1MA4 LINE L1 -3243 4322 3154 2171 125 0 10 chr1 145486891 145487204 -97177149 - AluSg SINE Alu 0 310 1 8597 218 68 32 chr1 145487204 145488118 -97176235 - L1MA4 LINE L1 -4411 3154 1978 30 0 0 0 chr1 145488309 145488339 -97176014 + AT_rich Low_complexity Low_complexity 1 30 0 264 59 0 0 chr1 145489094 145489128 -97175225 + (TATG)n Simple_repeat Simple_repeat 1 34 0 405 0 0 0 chr1 145489128 145489173 -97175180 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 181 93 0 47 chr1 145489173 145489216 -97175137 + (CAT)n Simple_repeat Simple_repeat 3 43 0 273 275 69 107 chr1 145489796 145490029 -97174324 + MIR SINE MIR 21 244 -18 240 35 0 0 chr1 145490130 145490159 -97174194 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2075 114 4 0 chr1 145490160 145490440 -97173913 - AluSq SINE Alu -32 281 1 5265 117 4 4 chr1 145490747 145491049 -97173304 - L1PA15 LINE L1 -5 6160 5859 1130 259 32 24 chr1 145491049 145491640 -97172713 - L1MC3 LINE L1 -1927 5858 5263 228 195 0 0 chr1 145491857 145491898 -97172455 - L1MC/D LINE L1 -2019 5789 5749 1910 160 35 25 chr1 145492291 145492659 -97171694 + THE1C LTR MaLR 1 372 -3 9572 140 38 5 chr1 145492663 145494191 -97170162 + THE1C-int LTR MaLR 2 1580 0 261 116 0 0 chr1 145494191 145494234 -97170119 + THE1C LTR MaLR 1 43 -385 342 258 0 0 chr1 145495528 145495625 -97168728 + L1ME3A LINE L1 5786 5882 -288 1599 129 0 0 chr1 145497535 145497759 -97166594 + AluSg/x SINE Alu 87 310 0 195 333 26 13 chr1 145498201 145498279 -97166074 - L2 LINE L2 -611 2703 2625 359 291 45 0 chr1 145498309 145498419 -97165934 - L2 LINE L2 0 3313 3199 7514 36 0 0 chr1 145499145 145500394 -97163959 - L1PA4 LINE L1 -3 6152 4904 202 239 71 150 chr1 145501243 145501356 -97162997 - MIR3 SINE MIR -21 187 84 216 284 95 0 chr1 145502410 145502484 -97161869 - MIR3 SINE MIR -21 187 107 481 309 100 14 chr1 145502499 145502709 -97161644 - MIR SINE MIR -6 256 29 382 227 41 0 chr1 145503169 145503266 -97161087 + L1MEc LINE L1 1999 2099 -4297 1525 259 11 36 chr1 145503266 145503818 -97160535 + L1MEc LINE L1 2489 3026 -3189 5546 170 26 4 chr1 145503823 145505847 -97158506 + L1PA16 LINE L1 4089 6158 -8 1127 256 69 18 chr1 145505852 145506479 -97157874 + L1MEc LINE L1 2086 2700 -3515 359 239 42 63 chr1 145506478 145506620 -97157733 + L1MEc LINE L1 1676 1814 -4582 * 2071 246 84 0 chr1 145506615 145507279 -97157074 + L1MEc LINE L1 3715 4434 -1781 427 291 42 61 chr1 145508508 145508721 -97155632 + MIR SINE MIR 8 216 -46 413 244 188 30 chr1 145508830 145508900 -97155453 + L2 LINE L2 3085 3143 -170 357 43 0 0 chr1 145508900 145508947 -97155406 + (TATG)n Simple_repeat Simple_repeat 2 48 0 413 244 188 30 chr1 145508947 145509073 -97155280 + L2 LINE L2 3143 3312 -1 341 260 126 43 chr1 145509815 145510092 -97154261 + Charlie7 DNA MER1_type 54 353 -2259 35 24 0 0 chr1 145510092 145510134 -97154219 + AT_rich Low_complexity Low_complexity 1 42 0 1952 138 14 3 chr1 145510139 145510436 -97153917 - AluJb SINE Alu -12 300 1 1341 245 71 19 chr1 145510449 145510894 -97153459 + Charlie7 DNA MER1_type 1493 1913 -699 2103 137 3 0 chr1 145510894 145511201 -97153152 + AluSx SINE Alu 1 308 -4 1341 245 71 19 chr1 145511201 145511522 -97152831 + Charlie7 DNA MER1_type 1913 2334 -278 372 94 0 0 chr1 145511577 145511630 -97152723 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 1847 167 7 7 chr1 145511645 145511950 -97152403 - AluJb SINE Alu -7 305 1 334 174 28 111 chr1 145511958 145512102 -97152251 + Charlie7 DNA MER1_type 2458 2589 -23 273 57 0 0 chr1 145513786 145513821 -97150532 + (TC)n Simple_repeat Simple_repeat 2 36 0 808 213 51 47 chr1 145519265 145519500 -97144853 - MER106A DNA MER1_type 0 236 1 285 424 38 0 chr1 145519740 145519872 -97144481 + L2 LINE L2 3134 3270 -2 35 0 0 0 chr1 145519992 145520027 -97144326 + AT_rich Low_complexity Low_complexity 1 35 0 277 268 113 0 chr1 145520531 145520602 -97143751 + L2 LINE L2 3162 3240 -32 762 179 5 33 chr1 145520603 145520703 -97143650 - MER53 DNA DNA 0 189 95 2020 144 22 35 chr1 145520703 145521072 -97143281 - THE1B LTR MaLR 0 364 1 762 179 5 33 chr1 145521072 145521155 -97143198 - MER53 DNA DNA -94 95 11 2113 105 3 3 chr1 145521383 145521668 -97142685 - AluSc SINE Alu -24 285 1 562 213 37 29 chr1 145522678 145522814 -97141539 - AluJo SINE Alu -173 139 3 987 138 39 0 chr1 145523065 145523246 -97141107 - L1PA11 LINE L1 -2149 3997 3810 7686 144 3 9 chr1 145523247 145525397 -97138956 + L1PA11 LINE L1 4010 6173 -1 353 236 48 18 chr1 145525398 145525527 -97138826 - MER41C LTR ERV1 -113 444 282 25 0 0 0 chr1 145529364 145529389 -97134964 + AT_rich Low_complexity Low_complexity 1 25 0 336 323 93 53 chr1 145530004 145530112 -97134241 + L2 LINE L2 2255 2357 -957 2230 109 7 0 chr1 145530112 145530414 -97133939 - AluSg SINE Alu -6 304 1 336 323 93 53 chr1 145530414 145530531 -97133822 + L2 LINE L2 2357 2489 -825 1355 254 115 53 chr1 145530630 145531829 -97132524 - L1ME3A LINE L1 0 6239 4971 22 0 0 0 chr1 145531851 145531873 -97132480 + AT_rich Low_complexity Low_complexity 1 22 0 6273 122 34 1 chr1 145531873 145533030 -97131323 - L1MA2 LINE L1 0 7723 6531 2510 158 0 2 chr1 145533031 145533475 -97130878 - L1MA2 LINE L1 -5163 2402 1960 9393 173 59 8 chr1 145533476 145535281 -97129072 - L1MA2 LINE L1 -5658 1907 12 388 268 65 88 chr1 145535429 145536034 -97128319 - L1ME3A LINE L1 -1444 4771 4181 386 295 70 19 chr1 145536158 145536314 -97128039 + ERVL LTR ERVL 4739 4902 -862 50 51 0 0 chr1 145536465 145536543 -97127810 + AT_rich Low_complexity Low_complexity 1 78 0 348 265 42 45 chr1 145536552 145537053 -97127300 - L1ME3A LINE L1 -2866 3349 2847 384 265 175 47 chr1 145537085 145537342 -97127011 - L1ME3A LINE L1 -3433 2782 2493 32 0 0 0 chr1 145538527 145538559 -97125794 + AT_rich Low_complexity Low_complexity 1 32 0 1896 166 73 15 chr1 145538807 145539205 -97125148 - MSTA LTR MaLR -5 423 3 8914 157 55 8 chr1 145539207 145540783 -97123570 - MSTA-int LTR MaLR 0 1651 1 2573 133 44 5 chr1 145540783 145541195 -97123158 - MSTA LTR MaLR 0 428 1 2183 128 3 0 chr1 145541793 145542089 -97122264 + AluSx SINE Alu 6 302 -10 23 0 0 0 chr1 145543174 145543197 -97121156 + AT_rich Low_complexity Low_complexity 1 23 0 255 103 0 0 chr1 145543289 145543328 -97121025 + (TG)n Simple_repeat Simple_repeat 2 40 0 405 277 36 12 chr1 145543357 145543527 -97120826 - HAL1b LINE L1 -859 489 384 398 289 103 55 chr1 145543656 145543968 -97120385 - L1MEd LINE L1 -4908 1297 1010 240 35 0 0 chr1 145544540 145544569 -97119784 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1796 65 0 9 chr1 145544590 145544819 -97119534 - AluY SINE Alu -84 227 1 4161 176 19 18 chr1 145545403 145546731 -97117622 + L1PB3 LINE L1 4287 5606 -548 5522 34 5 1 chr1 145546736 145547408 -97116945 + L1PA4 LINE L1 5481 6154 -1 3491 124 13 4 chr1 145547408 145547962 -97116391 + L1PB3 LINE L1 5593 6154 0 357 244 98 55 chr1 145549197 145549361 -97114992 + L1ME4a LINE L1 5923 6093 -28 1489 203 0 47 chr1 145549849 145550203 -97114150 + AluJb SINE Alu 1 340 0 13616 132 23 4 chr1 145550412 145552657 -97111696 + Tigger1 DNA MER2_type 26 2313 -105 1698 184 18 4 chr1 145552782 145553147 -97111206 - L1PA16 LINE L1 0 6155 5772 6015 154 20 16 chr1 145553147 145553791 -97110562 - L1PA13 LINE L1 -2 7599 6959 2048 131 0 16 chr1 145553791 145554103 -97110250 - AluSg SINE Alu -3 307 1 6015 154 20 16 chr1 145554103 145555407 -97108946 - L1PA7 LINE L1 -642 6959 5631 5291 50 3 0 chr1 145555407 145556061 -97108292 + L1PA7 LINE L1 6934 7589 -3 2683 233 10 38 chr1 145556061 145556713 -97107640 - L1PA13 LINE L1 -4427 3157 2520 2569 118 3 3 chr1 145556713 145557077 -97107276 - THE1B LTR MaLR 0 364 1 2683 233 10 38 chr1 145557077 145557294 -97107059 - L1PA13 LINE L1 -5064 2520 2298 373 276 0 0 chr1 145557623 145557721 -97106632 - L1PA13 LINE L1 -5399 2182 2085 851 352 28 23 chr1 145558013 145558450 -97105903 - L1PA13 LINE L1 -6348 1226 788 410 248 168 7 chr1 145558469 145558618 -97105735 + MIR SINE MIR 88 260 -2 2606 215 58 47 chr1 145558936 145559782 -97104571 - L1MD2 LINE L1 -9 6350 5496 285 203 0 0 chr1 145559789 145559848 -97104505 - Charlie2a DNA MER1_type -737 2125 2067 251 161 36 18 chr1 145559901 145559957 -97104396 - Charlie2a DNA MER1_type -1073 1789 1733 1834 216 36 39 chr1 145560216 145561037 -97103316 - L1MD2 LINE L1 -743 5403 4674 1647 178 14 14 chr1 145561234 145561527 -97102826 + AluJo SINE Alu 13 305 -7 229 238 95 0 chr1 145562042 145562126 -97102227 + Charlie2a DNA MER1_type 1733 1824 -1038 604 178 23 166 chr1 145562162 145562560 -97101793 + Charlie2a DNA MER1_type 2067 2407 -455 21 0 0 0 chr1 145562669 145562690 -97101663 + AT_rich Low_complexity Low_complexity 1 21 0 1497 127 54 0 chr1 145562717 145562977 -97101376 + L1MA1 LINE L1 6015 6288 -14 316 77 0 0 chr1 145562977 145563029 -97101324 + L1MA3 LINE L1 6254 6305 0 1004 125 0 138 chr1 145563041 145563122 -97101231 + L1PA15 LINE L1 5959 6050 -115 2327 86 10 0 chr1 145563122 145563425 -97100928 + AluY SINE Alu 5 310 -1 1004 125 0 138 chr1 145563425 145563583 -97100770 + L1PA15 LINE L1 6049 6165 0 262 212 62 18 chr1 145563623 145563736 -97100617 + Charlie2a DNA MER1_type 2633 2750 -112 746 144 17 0 chr1 145563738 145563856 -97100497 - Tigger1 DNA MER2_type -3 2415 2296 1759 222 2 7 chr1 145563860 145564301 -97100052 + L1P LINE L1 3362 3800 -2346 181 237 26 0 chr1 145564416 145564454 -97099899 + L2 LINE L2 3218 3256 -16 1706 135 29 43 chr1 145566037 145566318 -97098035 + AluSx SINE Alu 1 277 -35 405 102 0 0 chr1 145566322 145566381 -97097972 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 22 35 0 0 chr1 145567296 145567325 -97097028 + AT_rich Low_complexity Low_complexity 1 29 0 363 296 75 27 chr1 145567713 145567951 -97096402 - L1M4 LINE L1 -1209 4937 4692 317 316 19 13 chr1 145568585 145568743 -97095610 + HAL1b LINE L1 471 629 -719 1057 138 74 0 chr1 145569128 145569317 -97095036 - MER67C LTR ERV1 -440 270 68 2284 104 48 25 chr1 145570061 145570417 -97093936 + THE1B LTR MaLR 1 364 0 392 290 145 14 chr1 145570573 145570863 -97093490 + L1MC4a LINE L1 4382 4709 -1437 240 196 0 0 chr1 145570925 145570971 -97093382 + (CA)n Simple_repeat Simple_repeat 1 46 0 2363 266 52 32 chr1 145571043 145571814 -97092539 - MER21B LTR ERV1 -61 802 17 546 342 44 25 chr1 145571884 145571974 -97092379 + L1MC4a LINE L1 4903 4990 -1156 4015 99 2 0 chr1 145571974 145572527 -97091826 + MER41A LTR ERV1 1 554 0 546 342 44 25 chr1 145572527 145572584 -97091769 + L1MC4a LINE L1 4990 5044 -1102 2022 168 0 0 chr1 145572584 145572894 -97091459 + AluJb SINE Alu 1 310 -2 546 342 44 25 chr1 145572894 145573178 -97091175 + L1MC4a LINE L1 5044 5343 -803 502 314 91 25 chr1 145573181 145573709 -97090644 + L1MC4a LINE L1 5397 5959 -1849 1482 234 14 0 chr1 145574301 145574596 -97089757 + AluJo SINE Alu 1 299 -13 642 145 26 0 chr1 145574729 145574846 -97089507 + L1MA8 LINE L1 6167 6286 -5 246 282 26 34 chr1 145574939 145575056 -97089297 + MLT1H LTR MaLR 42 157 -392 1161 236 24 91 chr1 145575127 145575290 -97089063 + MLT1B LTR MaLR 3 175 -215 780 65 19 0 chr1 145575290 145575398 -97088955 + L1PA7 LINE L1 6045 6154 0 1161 236 24 91 chr1 145575398 145575581 -97088772 + MLT1B LTR MaLR 175 319 -71 2261 95 0 0 chr1 145575581 145575876 -97088477 + AluY SINE Alu 1 295 -16 1161 236 24 91 chr1 145575876 145575944 -97088409 + MLT1B LTR MaLR 319 390 0 5511 160 37 21 chr1 145576285 145576876 -97087477 + L1PA15 LINE L1 4398 4978 -1187 2575 104 30 0 chr1 145576876 145577240 -97087113 + THE1C LTR MaLR 1 375 0 5511 160 37 21 chr1 145577240 145578237 -97086116 + L1PA15 LINE L1 4978 5957 -208 1808 146 3 31 chr1 145578237 145578525 -97085828 + AluSx SINE Alu 1 280 -32 1125 90 11 6 chr1 145578527 145578705 -97085648 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 213 39 0 0 chr1 145578705 145578731 -97085622 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 5511 160 37 21 chr1 145578731 145578869 -97085484 + L1PA15 LINE L1 5956 6164 -1 1756 171 25 0 chr1 145579234 145579509 -97084844 + AluJb SINE Alu 1 282 -30 1750 249 5 12 chr1 145579930 145580340 -97084013 + L1M2 LINE L1 875 1281 -5568 2693 190 49 40 chr1 145580362 145580622 -97083731 + L1M2 LINE L1 2114 2370 -4478 216 0 0 0 chr1 145580622 145580646 -97083707 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2693 190 49 40 chr1 145580646 145581145 -97083208 + L1M2 LINE L1 2370 2882 -3966 2093 128 0 10 chr1 145581145 145581450 -97082903 + AluSq SINE Alu 5 306 -7 2693 190 49 40 chr1 145581450 145581645 -97082708 + L1M2 LINE L1 2882 3074 -3774 2220 121 0 0 chr1 145581649 145581956 -97082397 + AluY SINE Alu 1 307 -4 1253 89 0 39 chr1 145581956 145582155 -97082198 + AluSc SINE Alu 133 309 0 5338 205 36 5 chr1 145582155 145583455 -97080898 + L1M2 LINE L1 3114 4453 -2395 918 291 56 24 chr1 145583602 145583976 -97080377 + MLT1G LTR MaLR 1 386 -204 2510 65 0 0 chr1 145584090 145584384 -97079969 + AluY SINE Alu 1 294 -17 2481 62 0 0 chr1 145587320 145587627 -97076726 - AluY SINE Alu -4 307 1 1558 213 25 14 chr1 145588734 145589095 -97075258 - MLT1A1 LTR MaLR 0 365 1 185 271 0 21 chr1 145589360 145589408 -97074945 + L2 LINE L2 2275 2321 -993 24 0 0 0 chr1 145589927 145589951 -97074402 + AT_rich Low_complexity Low_complexity 1 24 0 295 307 34 0 chr1 145590523 145590611 -97073742 + MIR SINE MIR 36 126 -136 298 191 355 40 chr1 145590611 145590763 -97073590 + LTR36 LTR ERV1 1 200 -411 1412 170 58 18 chr1 145590789 145591118 -97073235 + LTR36 LTR ERV1 270 611 0 297 317 50 8 chr1 145592216 145592336 -97072017 - MIR SINE MIR -136 126 2 894 213 76 14 chr1 145593008 145593219 -97071134 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr1 145593743 145593764 -97070589 + AT_rich Low_complexity Low_complexity 1 21 0 1970 118 4 0 chr1 145594202 145594465 -97069888 - AluSx SINE Alu -44 268 5 636 272 37 63 chr1 145595198 145595352 -97069001 - MIR SINE MIR -1 261 115 1708 203 22 22 chr1 145595352 145595717 -97068636 - MLT1A1 LTR MaLR 0 365 1 636 272 37 63 chr1 145595717 145595830 -97068523 - MIR SINE MIR -147 115 1 423 331 98 23 chr1 145596360 145596565 -97067788 + L1ME4a LINE L1 5678 5866 -255 2530 80 0 0 chr1 145596565 145596876 -97067477 + AluY SINE Alu 1 311 0 423 331 98 23 chr1 145596876 145597066 -97067287 + L1ME4a LINE L1 5866 6103 -18 330 306 41 27 chr1 145599520 145599667 -97064686 - L2 LINE L2 0 3313 3165 283 361 88 19 chr1 145600532 145600748 -97063605 - L2 LINE L2 -644 2670 2440 652 305 64 80 chr1 145601668 145601914 -97062439 + L1MEd LINE L1 12 260 -5859 2143 109 3 0 chr1 145601914 145602207 -97062146 - AluSx SINE Alu -18 294 1 652 305 64 80 chr1 145602207 145602612 -97061741 + L1MEd LINE L1 260 653 -5466 252 289 86 53 chr1 145602611 145602763 -97061590 + L1M3c LINE L1 1357 1513 -5983 * 685 329 47 26 chr1 145603145 145603571 -97060782 + L1M3c LINE L1 1988 2422 -5144 921 157 0 0 chr1 145603579 145603719 -97060634 + AluSg/x SINE Alu 156 295 -17 221 0 35 0 chr1 145603722 145603751 -97060602 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 10399 193 73 55 chr1 145603756 145604487 -97059866 + L1MA7 LINE L1 2178 2895 -4815 2069 161 3 0 chr1 145604487 145604797 -97059556 + AluSq SINE Alu 1 311 -2 10399 193 73 55 chr1 145604797 145607757 -97056596 + L1MA7 LINE L1 2895 5952 -1758 192 77 0 0 chr1 145607757 145607783 -97056570 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 10399 193 73 55 chr1 145607783 145609562 -97054791 + L1MA7 LINE L1 5952 7699 -11 330 169 0 0 chr1 145609704 145609763 -97054590 + FLAM_A SINE Alu 48 106 -27 1308 159 10 14 chr1 145609764 145609972 -97054381 + AluJo SINE Alu 82 288 -24 556 331 62 4 chr1 145610161 145610403 -97053950 - MIR SINE MIR 0 262 7 638 274 70 23 chr1 145610413 145610941 -97053412 + L1MEd LINE L1 925 1332 -4797 413 345 47 0 chr1 145611268 145611439 -97052914 - L2 LINE L2 -292 3021 2843 682 242 11 11 chr1 145611930 145612112 -97052241 + L1ME2 LINE L1 5974 6155 -9 1205 119 0 0 chr1 145612186 145612363 -97051990 + THE1C LTR MaLR 199 375 0 238 344 70 23 chr1 145612378 145612506 -97051847 + L1MC/D LINE L1 5523 5656 -2152 562 61 12 0 chr1 145612634 145612716 -97051637 + L1MB4 LINE L1 6098 6180 0 1310 191 8 13 chr1 145613034 145613270 -97051083 + AluJb SINE Alu 60 294 -18 209 338 56 0 chr1 145616371 145616442 -97047911 + L2 LINE L2 3239 3313 0 1922 128 7 4 chr1 145616895 145617200 -97047153 - AluSx SINE Alu 0 306 1 2289 18 0 0 chr1 145617225 145617509 -97046844 - L1P LINE L1 -1579 4567 4284 1601 26 0 5 chr1 145617509 145617702 -97046651 + L1PA4 LINE L1 5960 6152 -3 378 290 99 8 chr1 145618121 145618252 -97046101 - MIR3 SINE MIR -32 176 34 237 328 109 28 chr1 145618440 145618687 -97045666 - L2 LINE L2 -121 3192 2926 2270 105 0 0 chr1 145618796 145619090 -97045263 - AluSc SINE Alu -15 294 1 556 336 49 24 chr1 145620848 145621095 -97043258 + MIR SINE MIR 1 253 -9 1921 170 6 3 chr1 145622748 145623059 -97041294 - AluJb SINE Alu 0 312 1 2024 134 3 3 chr1 145623514 145623806 -97040547 + AluSx SINE Alu 1 292 -20 195 211 28 14 chr1 145625141 145625212 -97039141 + CT-rich Low_complexity Low_complexity 1 72 0 772 269 94 14 chr1 145625666 145625889 -97038464 + MIR SINE MIR 22 262 0 1385 303 99 49 chr1 145626018 145627163 -97037190 - L2 LINE L2 0 3313 2105 513 213 0 0 chr1 145627174 145627268 -97037085 + AluJ/FLAM SINE Alu 1 94 -218 30 0 0 0 chr1 145627272 145627302 -97037051 + AT_rich Low_complexity Low_complexity 1 30 0 251 27 0 27 chr1 145627313 145627350 -97037003 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1930 116 7 44 chr1 145627366 145627660 -97036693 - AluSq SINE Alu -30 283 1 899 220 0 0 chr1 145627673 145627832 -97036521 + FRAM SINE Alu 1 154 -22 938 272 54 4 chr1 145627843 145628104 -97036249 - L2 LINE L2 -1227 2087 1814 484 212 32 90 chr1 145628123 145628185 -97036168 + L1ME1 LINE L1 5972 6036 -130 2257 128 0 0 chr1 145628185 145628497 -97035856 - AluSx SINE Alu 0 312 1 484 212 32 90 chr1 145628497 145628623 -97035730 + L1ME1 LINE L1 6036 6149 -17 1759 146 51 20 chr1 145628684 145628978 -97035375 - AluJo SINE Alu -7 305 3 14781 213 36 27 chr1 145629067 145634685 -97029668 + L1MA6 LINE L1 5 5354 -1967 369 0 0 0 chr1 145634685 145634726 -97029627 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 14781 213 36 27 chr1 145634726 145636468 -97027885 + L1MA6 LINE L1 5354 7079 -242 870 138 15 115 chr1 145636472 145636741 -97027612 + L1MB8 LINE L1 5931 6172 -6 1549 324 150 13 chr1 145636759 145637671 -97026682 - L2 LINE L2 -1635 1679 643 3245 156 9 34 chr1 145639285 145639869 -97024484 - L1MA6 LINE L1 -6 6294 5726 2322 19 0 4 chr1 145640107 145640370 -97023983 + AluY SINE Alu 50 311 0 367 244 31 44 chr1 145640487 145640505 -97023848 - L1MA10 LINE L1 -1 6333 6316 1165 229 103 15 chr1 145640505 145641185 -97023168 - L1ME2 LINE L1 -9 6155 5292 236 180 0 0 chr1 145641204 145641254 -97023099 - L1ME2 LINE L1 -974 5172 5123 1189 165 0 30 chr1 145641267 145641467 -97022886 - AluJb SINE Alu -7 305 112 5509 157 15 8 chr1 145641467 145642357 -97021996 - ERVL-B1 LTR ERVL -1319 4445 3550 11734 198 19 4 chr1 145642360 145644489 -97019864 - ERVL-B1 LTR ERVL -2866 2898 738 2645 234 49 15 chr1 145644509 145645124 -97019229 - ERVL-B1 LTR ERVL -5127 637 2 2101 217 72 36 chr1 145645125 145645164 -97019189 - MLT2B1 LTR ERVL 0 520 484 429 20 0 0 chr1 145645164 145645214 -97019139 + (TG)n Simple_repeat Simple_repeat 2 51 0 2101 217 72 36 chr1 145645214 145645676 -97018677 - MLT2B1 LTR ERVL -36 484 1 484 189 182 8 chr1 145646146 145646278 -97018075 + L2 LINE L2 1907 2061 -1253 844 319 18 7 chr1 145646405 145646678 -97017675 + LTR16C LTR ERVL 186 461 -30 839 239 99 35 chr1 145646700 145646984 -97017369 + L2 LINE L2 2113 2414 -900 530 359 9 5 chr1 145646985 145647202 -97017151 - L2 LINE L2 -400 2914 2697 24 77 0 0 chr1 145647577 145647629 -97016724 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr1 145647951 145647974 -97016379 + AT_rich Low_complexity Low_complexity 1 23 0 201 286 0 16 chr1 145648378 145648441 -97015912 + CT-rich Low_complexity Low_complexity 4 65 0 318 260 62 70 chr1 145650087 145650289 -97014064 - MIR SINE MIR -59 203 4 1703 168 0 31 chr1 145651490 145651811 -97012542 - AluJb SINE Alu -1 311 1 210 200 22 0 chr1 145653241 145653286 -97011067 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 280 159 48 32 chr1 145654376 145654439 -97009914 - MIR3 SINE MIR -20 188 125 1390 181 147 11 chr1 145654875 145655141 -97009212 + AluSx SINE Alu 1 302 0 2511 72 0 3 chr1 145655672 145655976 -97008377 - AluY SINE Alu -8 303 1 285 259 0 0 chr1 145656443 145656524 -97007829 + A-rich Low_complexity Low_complexity 1 81 0 259 279 318 8 chr1 145656797 145656926 -97007427 + MER91A DNA MER1_type 28 196 0 1336 217 33 0 chr1 145657781 145658053 -97006300 - MER58B DNA MER1_type -4 337 57 424 299 50 40 chr1 145658892 145659093 -97005260 - MIR SINE MIR -31 231 29 968 207 0 0 chr1 145660805 145660969 -97003384 + FRAM SINE Alu 1 164 -2 182 333 183 21 chr1 145660977 145661163 -97003190 - L2 LINE L2 -225 3088 2873 213 333 0 0 chr1 145663026 145663089 -97001264 + L3 LINE CR1 1140 1202 -375 301 147 0 93 chr1 145663187 145663262 -97001091 + Tigger2 DNA MER2_type 18 85 -2633 23 0 0 0 chr1 145663305 145663328 -97001025 + AT_rich Low_complexity Low_complexity 1 23 0 345 314 0 10 chr1 145663908 145664010 -97000343 + MIR SINE MIR 2 102 -160 315 0 0 0 chr1 145664051 145664086 -97000267 + (T)n Simple_repeat Simple_repeat 1 35 0 226 255 0 0 chr1 145664998 145665045 -96999308 - L2 LINE L2 -13 3300 3254 2100 128 0 3 chr1 145665167 145665473 -96998880 + AluSc SINE Alu 5 309 0 35 0 0 22 chr1 145665581 145665594 -96998759 + AT_rich Low_complexity Low_complexity 1 13 -32 7293 35 0 0 chr1 145665594 145666404 -96997949 + L1PA5 LINE L1 5339 6148 -6 35 0 0 22 chr1 145666404 145666436 -96997917 + AT_rich Low_complexity Low_complexity 13 45 0 21 71 0 0 chr1 145666601 145666643 -96997710 + AT_rich Low_complexity Low_complexity 1 42 0 183 42 0 0 chr1 145666848 145666872 -96997481 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1186 159 0 48 chr1 145666874 145667082 -96997271 - AluJb SINE Alu -32 280 83 354 171 0 0 chr1 145667632 145667702 -96996651 + CT-rich Low_complexity Low_complexity 2 71 0 22 70 0 0 chr1 145668287 145668330 -96996023 + AT_rich Low_complexity Low_complexity 1 43 0 317 333 45 18 chr1 145670175 145670286 -96994067 - L2 LINE L2 -33 3239 3126 215 286 143 19 chr1 145670900 145671005 -96993348 - MIR3 SINE MIR 0 208 91 365 105 18 18 chr1 145671258 145671315 -96993038 - MLT1C LTR MaLR 0 467 411 825 219 0 24 chr1 145671316 145671480 -96992873 + FRAM SINE Alu 1 151 -25 410 79 0 63 chr1 145671506 145671569 -96992784 - MLT1C LTR MaLR -52 415 357 230 135 0 0 chr1 145671569 145671606 -96992747 - L1 LINE L1 -1545 4601 4565 1151 38 0 0 chr1 145671653 145671784 -96992569 - L1PA4 LINE L1 -4 6151 6021 2431 201 24 8 chr1 145671784 145672314 -96992039 + L1PA15 LINE L1 4634 5173 -968 5952 125 8 23 chr1 145672314 145673513 -96990840 + L1PA15 LINE L1 4979 6164 -1 1121 265 88 6 chr1 145673520 145673848 -96990505 - MLT1C LTR MaLR -98 369 15 195 308 31 31 chr1 145674370 145674435 -96989918 - L3 LINE CR1 -10 1567 1503 419 292 33 0 chr1 145674636 145674756 -96989597 - MIR3 SINE MIR -48 160 37 268 224 0 0 chr1 145675040 145675089 -96989264 + MIR SINE MIR 81 129 -133 3096 260 67 21 chr1 145675339 145676192 -96988161 + L1ME2 LINE L1 3951 4763 -1401 1911 146 0 23 chr1 145676192 145676521 -96987832 - AluJb SINE Alu 0 312 5 3096 260 67 21 chr1 145676521 145676650 -96987703 + L1ME2 LINE L1 4763 4885 -1279 186 43 0 0 chr1 145676650 145676673 -96987680 + (TAA)n Simple_repeat Simple_repeat 3 25 0 3096 260 67 21 chr1 145676673 145677730 -96986623 + L1ME2 LINE L1 4885 6096 -68 511 252 0 24 chr1 145677777 145677900 -96986453 - L2 LINE L2 -4 3309 3190 739 277 47 15 chr1 145677918 145678192 -96986161 + L1MC4a LINE L1 5695 5977 -1831 21 57 0 0 chr1 145678321 145678356 -96985997 + AT_rich Low_complexity Low_complexity 1 35 0 5193 57 7 0 chr1 145678379 145678991 -96985362 - L1PA5 LINE L1 -2 6152 5537 1221 76 67 85 chr1 145679574 145679678 -96984675 + L1MB3 LINE L1 5963 6067 -116 2033 117 7 39 chr1 145679678 145679987 -96984366 + AluSx SINE Alu 1 299 -13 1221 76 67 85 chr1 145679987 145680105 -96984248 + L1MB3 LINE L1 6067 6181 -2 332 261 21 92 chr1 145680338 145680480 -96983873 + MER91C DNA MER1_type 9 140 0 181 310 0 0 chr1 145680777 145680835 -96983518 - L2 LINE L2 -1 3271 3214 337 301 64 6 chr1 145681223 145681396 -96982957 + L1ME LINE L1 2581 2763 -3383 684 99 10 30 chr1 145681426 145681527 -96982826 - AluSq SINE Alu -92 221 123 2163 81 0 27 chr1 145681532 145681690 -96982663 - AluSx SINE Alu -24 288 127 266 0 29 0 chr1 145681690 145681724 -96982629 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2258 70 0 3 chr1 145681724 145682008 -96982345 - AluY SINE Alu -28 283 1 2163 81 0 27 chr1 145682008 145682144 -96982209 - AluSx SINE Alu -183 129 1 1074 224 124 17 chr1 145682145 145682619 -96981734 + L1ME LINE L1 2872 3396 -2750 21 0 0 0 chr1 145683401 145683422 -96980931 + AT_rich Low_complexity Low_complexity 1 21 0 361 81 32 0 chr1 145683564 145683626 -96980727 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1252 248 156 31 chr1 145683667 145684147 -96980206 + MLT1H LTR MaLR 8 547 -2 240 283 0 0 chr1 145684381 145684441 -96979912 + L2 LINE L2 3254 3313 0 778 312 59 29 chr1 145685248 145685877 -96978476 + L1M4 LINE L1 3784 4431 -1715 4227 147 74 36 chr1 145685879 145686047 -96978306 - MER4D LTR ERV1 0 872 712 3610 142 29 8 chr1 145686047 145686563 -96977790 - MER1A DNA MER1_type 0 527 1 4227 147 74 36 chr1 145686563 145687243 -96977110 - MER4D LTR ERV1 -160 712 1 718 290 72 19 chr1 145687353 145687715 -96976638 + L1MC4 LINE L1 7088 7468 -574 5362 34 5 0 chr1 145687826 145688453 -96975900 - L1PA3 LINE L1 -143 6012 5383 3381 263 68 31 chr1 145688469 145689191 -96975162 + L1ME LINE L1 3534 4227 -1943 2282 112 0 0 chr1 145689191 145689487 -96974866 + AluSq SINE Alu 1 296 -17 3381 263 68 31 chr1 145689487 145690880 -96973473 + L1ME LINE L1 4227 5729 -441 284 288 107 23 chr1 145691467 145691682 -96972671 - L1ME LINE L1 -296 5825 5593 26 30 0 0 chr1 145692577 145692610 -96971743 + AT_rich Low_complexity Low_complexity 1 33 0 293 290 239 13 chr1 145693020 145693175 -96971178 + MIR SINE MIR 17 206 -56 234 286 105 29 chr1 145693316 145693421 -96970932 + L2 LINE L2 3201 3313 0 337 305 103 6 chr1 145693569 145693743 -96970610 - L2 LINE L2 -8 3305 3115 188 317 188 20 chr1 145693917 145694119 -96970234 + L2 LINE L2 2623 2858 -456 219 173 0 39 chr1 145694296 145694348 -96970005 + (CA)n Simple_repeat Simple_repeat 2 51 0 276 130 0 0 chr1 145694515 145694561 -96969792 + (TA)n Simple_repeat Simple_repeat 2 47 0 7671 37 0 0 chr1 145694832 145695946 -96968407 - L1PA4 LINE L1 0 6155 5042 230 282 154 32 chr1 145696538 145696694 -96967659 + MIR3 SINE MIR 33 207 -1 360 275 99 21 chr1 145697579 145697721 -96966632 + MER5A DNA MER1_type 3 155 -34 477 0 0 0 chr1 145697777 145697830 -96966523 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 1844 172 0 0 chr1 145697830 145698115 -96966238 - AluSx SINE Alu -27 285 1 288 254 14 0 chr1 145698333 145698404 -96965949 + L1ME4a LINE L1 5601 5672 -449 2574 66 0 0 chr1 145698453 145698758 -96965595 + AluY SINE Alu 1 305 -6 251 257 189 36 chr1 145698762 145699069 -96965284 + L1ME4a LINE L1 5767 6120 -1 219 358 57 0 chr1 145700678 145700801 -96963552 + MIR3 SINE MIR 29 158 -50 234 275 14 113 chr1 145702610 145702752 -96961601 - L2 LINE L2 -188 3084 2957 499 252 110 0 chr1 145703246 145703401 -96960952 + MIR SINE MIR 21 192 -70 1896 168 120 111 chr1 145704204 145704860 -96959493 - MER4A LTR ERV1 0 664 3 7228 109 19 18 chr1 145706449 145707519 -96956834 - MER11C LTR ERVK 0 1071 1 2193 124 0 0 chr1 145708039 145708337 -96956016 + AluSx SINE Alu 1 298 -14 670 201 98 23 chr1 145708382 145708556 -96955797 + MIR SINE MIR 20 206 -56 439 254 32 8 chr1 145710298 145710424 -96953929 + MIR SINE MIR 124 252 -10 1656 151 0 75 chr1 145711542 145711847 -96952506 - AluJb SINE Alu -20 292 11 261 293 81 8 chr1 145712041 145712164 -96952189 - MIR SINE MIR -70 192 61 489 270 23 0 chr1 145712856 145712995 -96951358 - MIR SINE MIR -62 146 32 2608 49 0 3 chr1 145713235 145713540 -96950813 - AluY SINE Alu -7 304 1 256 231 108 0 chr1 145713561 145713626 -96950727 - MIR SINE MIR -73 189 118 4889 132 69 2 chr1 145713909 145714968 -96949385 + L1MA8 LINE L1 4912 6065 -226 635 196 54 59 chr1 145715068 145715272 -96949081 + L1MA8 LINE L1 6088 6290 -1 619 231 143 6 chr1 145715445 145715627 -96948726 - MER63A DNA MER1_type 0 210 4 1324 201 80 37 chr1 145716395 145716769 -96947584 + MLT1B LTR MaLR 1 390 0 994 187 0 0 chr1 145717415 145717581 -96946772 - FRAM SINE Alu -12 164 1 225 65 0 0 chr1 145717666 145717697 -96946656 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 242 271 60 38 chr1 145717744 145717877 -96946476 + L1M4 LINE L1 3753 3888 -2258 297 161 65 0 chr1 145717906 145717968 -96946385 - MIR SINE MIR -36 226 161 1163 200 14 0 chr1 145718005 145718220 -96946133 - MER58A DNA MER1_type -1 223 6 369 273 136 25 chr1 145719137 145719379 -96944974 + MLT1K LTR MaLR 162 430 -158 231 338 39 39 chr1 145719930 145720211 -96944142 - L2 LINE L2 -437 2877 2597 4476 219 21 43 chr1 145721385 145722775 -96941578 - L1M4c LINE L1 -4372 2274 816 403 332 37 41 chr1 145722906 145723177 -96941176 - HAL1 LINE L1 -1125 1382 1113 1618 258 84 58 chr1 145723191 145724175 -96940178 + L1M3e LINE L1 793 1802 -5228 329 231 154 8 chr1 145724176 145724293 -96940060 + L1M3e LINE L1 1693 1826 -5204 1264 191 10 20 chr1 145724293 145724596 -96939757 + L1M3e LINE L1 2173 2472 -4565 447 252 97 31 chr1 145724910 145725136 -96939217 - L1MC4a LINE L1 -1853 5955 5715 1807 191 0 0 chr1 145725331 145725619 -96938734 + AluSx SINE Alu 4 291 -21 522 114 181 0 chr1 145725667 145725772 -96938581 - L1MB4 LINE L1 0 6180 6057 228 340 28 0 chr1 145725789 145725895 -96938458 - L1P LINE L1 -1132 5014 4906 551 297 68 19 chr1 145725895 145726306 -96938047 - L1MC4a LINE L1 -1325 4821 4391 337 300 55 74 chr1 145726320 145726487 -96937866 - L1MC4a LINE L1 -1800 4346 4184 2271 90 0 0 chr1 145726487 145726766 -96937587 - AluSq SINE Alu -34 279 1 337 300 55 74 chr1 145726766 145726855 -96937498 - L1MC4a LINE L1 -1962 4184 4095 421 294 78 31 chr1 145726859 145727152 -96937201 - L1MC4a LINE L1 -2572 3574 3268 483 87 0 0 chr1 145727464 145727533 -96936820 + (TC)n Simple_repeat Simple_repeat 2 70 0 278 257 35 46 chr1 145728909 145729025 -96935328 + MIR SINE MIR 23 146 -62 456 299 85 47 chr1 145729392 145729793 -96934560 - L1ME LINE L1 -386 5735 5320 324 284 54 103 chr1 145730107 145730311 -96934042 - MIR SINE MIR -32 230 37 456 236 173 24 chr1 145731238 145731446 -96932907 + Charlie7 DNA MER1_type 39 277 -2335 822 251 94 27 chr1 145731494 145731824 -96932529 + Charlie7 DNA MER1_type 372 723 -1889 1781 157 13 30 chr1 145732428 145732733 -96931620 + AluJo SINE Alu 1 300 -12 374 290 129 32 chr1 145732899 145733116 -96931237 - MLT1J LTR MaLR -117 394 157 368 297 67 26 chr1 145733269 145733448 -96930905 - L1M4 LINE L1 -471 5650 5487 1298 179 14 61 chr1 145733448 145733727 -96930626 - LTR8A LTR ERV1 -428 299 34 2525 77 0 6 chr1 145733832 145734144 -96930209 - AluY SINE Alu -1 310 1 540 193 50 25 chr1 145735199 145735318 -96929035 + Zaphod DNA AcHobo 3910 4031 0 298 339 48 30 chr1 145735344 145735512 -96928841 - ERVL LTR ERVL -2735 2288 2118 2673 121 44 5 chr1 145735533 145735945 -96928408 - MSTA LTR MaLR 0 428 1 487 331 78 40 chr1 145736084 145736454 -96927899 - ERVL LTR ERVL -1905 3091 2818 364 328 60 26 chr1 145736575 145736807 -96927546 - ERVL LTR ERVL -4684 1080 841 371 333 0 8 chr1 145736924 145737044 -96927309 - ERVL LTR ERVL -5167 597 479 3190 83 46 0 chr1 145737723 145738156 -96926197 + MLT2A2 LTR ERVL 1 453 0 38641 79 15 5 chr1 145738156 145743316 -96921037 + HERVL-A2 LTR ERVL 1 5239 -415 180 97 0 0 chr1 145743316 145743347 -96921006 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 38641 79 15 5 chr1 145743347 145743768 -96920585 + HERVL-A2 LTR ERVL 5239 5654 0 3113 106 25 0 chr1 145743768 145744210 -96920143 + MLT2A2 LTR ERVL 1 453 0 336 319 129 29 chr1 145744236 145744435 -96919918 - L2 LINE L2 -927 2387 2209 1585 194 10 23 chr1 145744435 145744734 -96919619 + AluJo SINE Alu 1 295 -17 336 319 129 29 chr1 145744734 145744920 -96919433 - L2 LINE L2 -1105 2209 1963 2672 195 109 30 chr1 145745075 145745622 -96918731 - LTR8A LTR ERV1 0 727 116 1102 121 211 0 chr1 145745622 145745812 -96918541 - MER30 DNA MER1_type 0 230 1 2672 195 109 30 chr1 145745812 145745936 -96918417 - LTR8A LTR ERV1 -611 116 3 853 278 37 4 chr1 145745986 145746231 -96918122 + MIR SINE MIR 8 260 -2 565 250 23 56 chr1 145746415 145746671 -96917682 + MER21B LTR ERV1 52 265 -598 * 4294 150 20 7 chr1 145746655 145747357 -96916996 - MER50 LTR ERV1 -23 711 1 756 187 0 8 chr1 145747513 145747647 -96916706 + AluJb SINE Alu 3 135 -177 1040 208 0 5 chr1 145747749 145747941 -96916412 + AluJb SINE Alu 113 303 -9 380 207 17 95 chr1 145747943 145748059 -96916294 + MER21-int LTR ERV1 2354 2460 -1731 1103 74 0 7 chr1 145748130 145748265 -96916088 - AluY SINE Alu -177 134 1 2232 181 81 19 chr1 145748265 145748696 -96915657 - LTR26B LTR ERV1 -73 458 1 199 299 90 52 chr1 145748712 145748846 -96915507 + MIR SINE MIR 65 203 -59 1108 211 161 52 chr1 145749226 145749666 -96914687 - MER50 LTR ERV1 -7 727 240 3563 135 26 2 chr1 145749840 145750381 -96913972 + MER41A LTR ERV1 1 554 0 25 0 0 0 chr1 145750399 145750424 -96913929 + AT_rich Low_complexity Low_complexity 1 25 0 1133 380 27 38 chr1 145750524 145750892 -96913461 - THE1B LTR MaLR 0 364 1 3898 178 63 32 chr1 145751136 145751971 -96912382 + MER4D LTR ERV1 1 861 -42 4782 104 8 0 chr1 145752266 145752919 -96911434 + PABL_A LTR ERV1 1 658 -2 5898 100 21 20 chr1 145752921 145753772 -96910581 + PABL_A-int LTR ERV1 2 853 -4162 3915 99 9 3 chr1 145753770 145754353 -96910000 + PABL_A-int LTR ERV1 1038 1623 -3392 * 6773 134 223 18 chr1 145754338 145755758 -96908595 + pTR5 LTR ERV1 728 2438 0 584 156 428 0 chr1 145755791 145755971 -96908382 - LTR8 LTR ERV1 -434 257 1 17502 98 47 10 chr1 145755971 145758842 -96905511 + PABL_A-int LTR ERV1 2398 5015 0 4618 108 22 0 chr1 145758842 145759488 -96904865 + PABL_A LTR ERV1 1 660 0 1988 138 98 17 chr1 145759910 145760257 -96904096 + THE1C LTR MaLR 1 375 0 9748 153 31 3 chr1 145760257 145761794 -96902559 + THE1C-int LTR MaLR 1 1580 0 2296 141 11 21 chr1 145761796 145762173 -96902180 + THE1C LTR MaLR 3 375 0 984 236 68 70 chr1 145762471 145762915 -96901438 + MLT2C2 LTR ERVL 22 464 0 470 283 37 21 chr1 145762983 145763174 -96901179 - L3 LINE CR1 -78 1499 1306 205 300 17 0 chr1 145763814 145763874 -96900479 - MIR SINE MIR -65 143 83 361 297 42 58 chr1 145764713 145764972 -96899381 - MER4B-int LTR ERV1 -2227 4531 4277 6427 68 22 2 chr1 145765016 145765877 -96898476 - MER4B-int LTR ERV1 -3273 2313 1436 641 94 0 0 chr1 145765874 145765959 -96898394 - MER4B-int LTR ERV1 -4302 1284 1200 * 606 125 29 0 chr1 145765965 145766069 -96898284 - MER4B-int LTR ERV1 -4583 1003 897 9917 128 33 24 chr1 145766184 145767720 -96896633 - HERVL66 LTR ERVL -126 4203 2654 * 13008 94 19 11 chr1 145767700 145769483 -96894870 - HERVL66 LTR ERVL -2532 1797 1 3421 102 134 2 chr1 145769484 145770023 -96894330 - LTR66 LTR ERVL 0 610 1 311 305 98 0 chr1 145770235 145770399 -96893954 - MLT1J LTR MaLR -164 347 168 1229 163 79 16 chr1 145770455 145770707 -96893646 + THE1C LTR MaLR 1 268 -158 431 216 26 43 chr1 145770908 145771024 -96893329 - MLT1J2 LTR MaLR -316 134 21 11585 140 20 56 chr1 145771335 145774197 -96890156 - L1P3 LINE L1 -3587 2874 6 4000 108 11 0 chr1 145774210 145774905 -96889448 - L1P4 LINE L1 -346 5822 5123 935 294 160 14 chr1 145774973 145775654 -96888699 - L2 LINE L2 -172 3141 2373 1056 255 88 21 chr1 145775763 145776092 -96888261 - MLT1E2 LTR MaLR -244 382 32 771 263 78 16 chr1 145776102 145776422 -96887931 - L2 LINE L2 -1148 2166 1827 788 161 30 117 chr1 145776432 145776662 -96887691 + L1M4 LINE L1 5353 5562 -616 201 331 134 7 chr1 145776805 145776947 -96887406 + MIR SINE MIR 49 208 -54 624 184 40 148 chr1 145777283 145777506 -96886847 - MLT1A1 LTR MaLR 0 365 167 253 67 0 0 chr1 145777627 145777657 -96886696 - MLT1A1 LTR MaLR -167 207 178 240 67 0 0 chr1 145777688 145777718 -96886635 - MLT1A1 LTR MaLR -169 196 167 386 217 135 86 chr1 145778052 145778226 -96886127 - MLT1A1 LTR MaLR -169 196 1 405 81 32 0 chr1 145778431 145778493 -96885860 - L1MC2 LINE L1 -11 6333 6270 182 356 0 0 chr1 145778525 145778598 -96885755 + MIR SINE MIR 154 226 -36 312 171 0 0 chr1 145778622 145778704 -96885649 + T-rich Low_complexity Low_complexity 1 82 0 243 88 0 0 chr1 145780140 145780174 -96884179 + (CA)n Simple_repeat Simple_repeat 2 35 0 182 91 30 0 chr1 145781358 145781391 -96882962 + CT-rich Low_complexity Low_complexity 1 34 0 244 333 146 15 chr1 145781649 145781910 -96882443 - L2 LINE L2 -41 3231 2937 475 337 35 0 chr1 145782367 145782539 -96881814 - MER45A DNA AcHobo 0 178 1 2245 130 0 0 chr1 145783247 145783554 -96880799 + AluSg SINE Alu 1 307 -3 187 284 149 14 chr1 145785102 145785243 -96879110 + L3 LINE CR1 1249 1408 -169 5410 118 23 9 chr1 145785729 145786569 -96877784 + L1M1 LINE L1 1820 2670 -4895 4474 133 33 19 chr1 145786589 145787379 -96876974 + L1M1 LINE L1 2895 3803 -3762 1612 192 0 11 chr1 145787379 145787689 -96876664 + AluSx SINE Alu 1 307 0 4474 133 33 19 chr1 145787689 145787828 -96876525 + L1M1 LINE L1 3803 3939 -3626 1847 157 32 37 chr1 145788171 145788546 -96875807 + THE1C LTR MaLR 1 373 -2 1827 168 121 16 chr1 145789094 145789481 -96874872 - MSTA LTR MaLR 0 428 1 849 138 81 52 chr1 145789774 145789948 -96874405 - LTR47A LTR ERVL 0 452 274 24 32 0 0 chr1 145790348 145790379 -96873974 + AT_rich Low_complexity Low_complexity 1 31 0 5373 232 54 49 chr1 145790853 145792696 -96871657 + L1P3 LINE L1 10 1818 -4633 6632 81 12 6 chr1 145792708 145794392 -96869961 + L1PA10 LINE L1 4478 6168 0 405 285 119 50 chr1 145794400 145794719 -96869634 - L1 LINE L1 -2160 3986 3646 44 70 0 0 chr1 145794762 145794848 -96869505 + AT_rich Low_complexity Low_complexity 1 86 0 28 48 0 0 chr1 145794906 145794948 -96869405 + AT_rich Low_complexity Low_complexity 1 42 0 598 275 70 22 chr1 145796112 145796341 -96868012 + MIR SINE MIR 5 244 -18 2073 138 3 0 chr1 145796369 145796680 -96867673 - AluSx SINE Alu 0 312 1 231 32 0 0 chr1 145796911 145796942 -96867411 + MSTC LTR MaLR 398 428 0 1102 160 6 8 chr1 145796947 145797138 -96867215 - MSTC LTR MaLR -3 411 215 586 178 85 0 chr1 145797291 145797374 -96866979 - MSTC LTR MaLR -199 229 130 1990 160 9 68 chr1 145797374 145797799 -96866554 - MER57A LTR ERV1 -3 400 1 586 178 85 0 chr1 145797799 145797844 -96866509 - MSTC LTR MaLR -298 130 90 644 132 39 39 chr1 145797907 145798036 -96866317 - MSTC LTR MaLR -297 131 3 1997 125 9 18 chr1 145798086 145798414 -96865939 + L1PA8 LINE L1 5848 6172 0 321 203 25 85 chr1 145798933 145799051 -96865302 + MER5B DNA MER1_type 68 178 0 703 150 0 0 chr1 145799404 145799517 -96864836 - L1MA3 LINE L1 0 6305 6193 538 90 0 0 chr1 145799517 145799584 -96864769 + L1M2 LINE L1 5526 5592 -705 715 256 40 0 chr1 145800874 145801073 -96863280 + MER63A DNA MER1_type 4 210 0 5662 156 63 8 chr1 145801246 145801369 -96862984 - L1MA8 LINE L1 0 6291 6176 228 35 0 0 chr1 145801369 145801398 -96862955 + (TG)n Simple_repeat Simple_repeat 1 29 0 5662 156 63 8 chr1 145801398 145802560 -96861793 - L1MA8 LINE L1 -115 6176 4912 266 215 108 0 chr1 145802840 145802905 -96861448 + MIR SINE MIR 118 189 -73 438 268 24 0 chr1 145803157 145803283 -96861070 + MIR SINE MIR 40 167 -62 303 315 74 12 chr1 145803950 145804112 -96860241 + MIR SINE MIR 21 192 -70 1654 176 0 35 chr1 145804285 145804597 -96859756 + AluJb SINE Alu 4 304 -8 606 308 28 9 chr1 145805705 145805919 -96858434 - MIR SINE MIR -10 252 35 3938 188 54 8 chr1 145805975 145806080 -96858273 - L1MB8 LINE L1 -20 6158 6059 2189 108 0 23 chr1 145806080 145806385 -96857968 - AluSg SINE Alu -12 298 1 3938 188 54 8 chr1 145806385 145807197 -96857156 - L1MB8 LINE L1 -119 6059 5192 2045 133 3 0 chr1 145807216 145807510 -96856843 + AluSp SINE Alu 1 295 -18 249 33 0 0 chr1 145807510 145807540 -96856813 + (TA)n Simple_repeat Simple_repeat 2 31 0 272 202 0 2 chr1 145808000 145808058 -96856295 - L1ME1 LINE L1 -4 6162 6112 2044 137 10 3 chr1 145808556 145808856 -96855497 + AluSg SINE Alu 1 302 -8 342 115 0 0 chr1 145808856 145808908 -96855445 + (GA)n Simple_repeat Simple_repeat 1 52 0 198 283 159 14 chr1 145810515 145810660 -96853693 + L3 LINE CR1 1243 1408 -169 3541 138 36 0 chr1 145811045 145811595 -96852758 + LTR26 LTR ERV1 34 603 0 215 307 30 10 chr1 145811595 145811696 -96852657 - MIR SINE MIR -100 162 60 380 232 0 0 chr1 145812772 145812854 -96851499 - MER5A DNA MER1_type 0 189 108 251 264 0 0 chr1 145812855 145812908 -96851445 + GA-rich Low_complexity Low_complexity 3 55 0 279 275 44 11 chr1 145812983 145813074 -96851279 - L3 LINE CR1 -69 1508 1415 694 245 16 5 chr1 145813166 145813347 -96851006 - L1ME1 LINE L1 -140 6026 5841 1600 184 75 6 chr1 145813347 145813668 -96850685 + MER61A LTR ERV1 1 343 0 2669 169 37 51 chr1 145813674 145814380 -96849973 + MER61A-int LTR ERV1 7 1553 -3664 * 6123 124 13 8 chr1 145814358 145815610 -96848743 + MER61A-int LTR ERV1 3915 5217 0 1745 135 91 16 chr1 145815610 145815929 -96848424 + MER61A LTR ERV1 1 343 0 1147 208 10 42 chr1 145815947 145816235 -96848118 - L1ME1 LINE L1 -336 5828 5550 2461 147 11 37 chr1 145816992 145817428 -96846925 - MSTA LTR MaLR 0 428 4 355 330 158 0 chr1 145818388 145818591 -96845762 + MIR SINE MIR 2 236 -26 1288 276 47 5 chr1 145818731 145819180 -96845173 + L2 LINE L2 2210 2677 -637 467 269 34 87 chr1 145819269 145819592 -96844761 + L2 LINE L2 3008 3313 0 195 214 0 0 chr1 145819922 145819964 -96844389 + MIR3 SINE MIR 158 199 -9 268 250 0 0 chr1 145819975 145820051 -96844302 + L3 LINE CR1 1425 1500 -77 207 253 187 22 chr1 145820675 145820809 -96843544 - MIR SINE MIR -67 141 19 501 303 49 5 chr1 145820910 145821095 -96843258 + MIR SINE MIR 57 249 -13 12221 67 6 2 chr1 145821100 145822692 -96841661 - PABL_A-int LTR ERV1 -528 4487 2890 3611 113 4 2 chr1 145822692 145823179 -96841174 - PABL_A-int LTR ERV1 -4527 488 1 549 103 0 0 chr1 145823179 145823247 -96841106 - PABL_A LTR ERV1 0 660 593 * 2401 88 121 46 chr1 145823246 145823619 -96840734 - PABL_A LTR ERV1 -259 401 1 847 209 26 2 chr1 145823833 145824041 -96840312 + MLT2B1 LTR ERVL 1 219 -195 252 201 16 160 chr1 145824267 145824461 -96839892 - L1MC4 LINE L1 -1 8041 7876 1238 234 90 73 chr1 145824582 145825283 -96839070 - L1MC4 LINE L1 -216 7592 6881 1981 183 51 46 chr1 145827947 145827997 -96836356 + MSTB LTR MaLR 5 53 -404 1684 174 4 7 chr1 145827997 145828272 -96836081 + AluJb SINE Alu 1 274 -38 2428 123 5 32 chr1 145828272 145828646 -96835707 + THE1B LTR MaLR 1 364 0 12165 91 3 0 chr1 145828646 145830221 -96834132 + THE1B-int LTR MaLR 1 1580 0 1984 126 15 101 chr1 145830221 145830617 -96833736 + THE1B LTR MaLR 1 362 -2 1981 183 51 46 chr1 145830617 145830638 -96833715 + MSTB LTR MaLR 53 72 -385 1061 39 39 0 chr1 145830638 145830791 -96833562 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 1981 183 51 46 chr1 145830791 145831161 -96833192 + MSTB LTR MaLR 72 444 -13 945 104 25 31 chr1 145831161 145831205 -96833148 + MSTB-int LTR MaLR 37 80 -1571 1483 143 50 113 chr1 145831205 145831605 -96832748 - THE1C LTR MaLR 0 375 1 945 104 25 31 chr1 145831605 145831723 -96832630 + MSTB-int LTR MaLR 80 198 -1453 13400 129 31 30 chr1 145831726 145835009 -96829344 + L1PA7 LINE L1 2 3407 -3054 833 88 18 0 chr1 145835020 145835134 -96829219 + L1PA3 LINE L1 1 116 -6030 * 35650 37 2 1 chr1 145835103 145840157 -96824196 + L1PA3 LINE L1 1078 6171 0 307 0 0 0 chr1 145840157 145840191 -96824162 + (TAA)n Simple_repeat Simple_repeat 3 180 0 16096 87 13 5 chr1 145840236 145843274 -96821079 + L1PA7 LINE L1 3387 6449 -20 538 242 38 0 chr1 145843280 145843466 -96820887 + L1M4 LINE L1 2963 3155 -2991 438 228 10 0 chr1 145843470 145843571 -96820782 + L1M4 LINE L1 4083 4184 -1962 1083 128 0 6 chr1 145843571 145843727 -96820626 + AluSg/x SINE Alu 144 298 -14 1989 191 36 6 chr1 145843812 145844173 -96820180 - MSTB LTR MaLR 0 426 55 193 303 56 34 chr1 145845424 145845513 -96818840 + MIR SINE MIR 158 248 -14 262 321 230 26 chr1 145845520 145846464 -96817889 - L2 LINE L2 -824 2490 1355 1005 216 35 135 chr1 145846467 145846897 -96817456 - MLT1B LTR MaLR 0 390 4 864 273 52 4 chr1 145846921 145847170 -96817183 + MIR SINE MIR 2 262 0 1679 186 4 11 chr1 145847724 145848003 -96816350 - AluJb SINE Alu -35 277 1 314 271 138 61 chr1 145848017 145848264 -96816089 - L2 LINE L2 -2701 613 348 1645 149 6 62 chr1 145848470 145848834 -96815519 - MER4A LTR ERV1 0 664 263 501 165 31 21 chr1 145848834 145848931 -96815422 - MER4A LTR ERV1 -566 98 1 15943 112 70 26 chr1 145848939 145852066 -96812287 - MER4A-int LTR ERV1 -2 6596 1862 1314 145 127 0 chr1 145852066 145852294 -96812059 + LTR8 LTR ERV1 1 257 -434 774 51 0 0 chr1 145852296 145852394 -96811959 - MER4-int LTR ERV1 -4105 2493 2396 309 143 0 0 chr1 145852394 145852443 -96811910 - LTR8 LTR ERV1 -642 49 1 943 92 0 13 chr1 145852443 145852595 -96811758 + MER4-int LTR ERV1 2737 2886 -3712 * 3876 90 57 14 chr1 145852593 145853226 -96811127 - MER4A-int LTR ERV1 -4204 2394 1735 1541 88 23 100 chr1 145853225 145853554 -96810799 - MER4A-int LTR ERV1 -4266 1271 504 * 232 143 0 48 chr1 145853577 145853619 -96810734 - LTR49 LTR ERV1 -285 310 271 333 164 0 33 chr1 145853661 145853722 -96810631 - MER4A-int LTR ERV1 -5789 809 751 297 304 28 79 chr1 145853844 145854058 -96810295 - MER4A-int LTR ERV1 -6182 576 374 2771 121 131 88 chr1 145854060 145854723 -96809630 - MER4A-int LTR ERV1 -5906 692 1 1736 144 3 54 chr1 145854728 145855088 -96809265 - MER4A LTR ERV1 -2 662 263 489 156 31 21 chr1 145855089 145855185 -96809168 - MER4A LTR ERV1 -567 97 1 2987 241 74 12 chr1 145855200 145856351 -96808002 + L1M4c LINE L1 2153 3377 -3005 * 3385 241 67 17 chr1 145856349 145857933 -96806420 - L1M4 LINE L1 -381 6039 4379 * 35878 112 7 14 chr1 145857921 145860095 -96804258 - L1PA6 LINE L1 -1 6153 3964 6980 115 20 33 chr1 145860095 145861180 -96803173 + MER11C LTR ERVK 1 1071 0 35878 112 7 14 chr1 145861180 145865195 -96799158 - L1PA6 LINE L1 -2190 3964 11 2239 271 48 9 chr1 145865214 145866019 -96798334 - L1M4 LINE L1 -1992 4390 3554 1357 266 40 16 chr1 145866248 145866749 -96797604 - L1M4 LINE L1 -4537 1847 1335 * 1561 309 59 31 chr1 145866744 145867918 -96796435 + L1M3a LINE L1 5 885 -5070 271 306 83 43 chr1 145868579 145868724 -96795629 + MIR SINE MIR 2 151 -63 22 0 0 0 chr1 145870822 145870844 -96793509 + AT_rich Low_complexity Low_complexity 1 22 0 402 55 36 0 chr1 145871143 145871198 -96793155 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 1038 120 0 16 chr1 145871198 145871291 -96793062 + (GAAA)n Simple_repeat Simple_repeat 1 271 0 1038 120 0 16 chr1 145871291 145871474 -96792879 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 267 314 118 6 chr1 145872838 145873007 -96791346 + MIR3 SINE MIR 17 204 -4 1239 184 93 50 chr1 145873267 145873610 -96790743 - THE1C LTR MaLR -3 372 15 432 322 50 17 chr1 145873995 145874175 -96790178 - MIR SINE MIR -73 189 4 511 295 148 30 chr1 145874549 145875081 -96789272 + L1MC4a LINE L1 5319 5913 -1895 22 0 0 0 chr1 145875275 145875297 -96789056 + AT_rich Low_complexity Low_complexity 1 22 0 190 173 0 96 chr1 145875338 145875390 -96788963 + MIR SINE MIR 140 186 -76 488 261 53 43 chr1 145875573 145875761 -96788592 - MIR SINE MIR -49 213 24 2072 174 109 0 chr1 145875845 145876231 -96788122 - MSTB1 LTR MaLR -1 431 4 1781 182 44 75 chr1 145876252 145876396 -96787957 - MLT1C LTR MaLR 0 467 320 1472 202 26 67 chr1 145876396 145876782 -96787571 - MLT1A2 LTR MaLR -4 370 1 1781 182 44 75 chr1 145876782 145877115 -96787238 - MLT1C LTR MaLR -147 320 5 897 203 17 13 chr1 145877841 145878067 -96786286 - LTR25 LTR ERV1 0 794 341 346 231 0 103 chr1 145878145 145878262 -96786091 - MER61E LTR ERV1 -379 190 86 * 449 252 29 0 chr1 145878243 145878346 -96786007 - LTR25 LTR ERV1 -441 353 248 1234 172 0 18 chr1 145879246 145879467 -96784886 + MSTB LTR MaLR 1 217 -209 3368 134 2 4 chr1 145879471 145879969 -96784384 - L1PA13 LINE L1 0 6163 5667 339 130 0 0 chr1 145879981 145880035 -96784318 + (TA)n Simple_repeat Simple_repeat 2 55 0 257 109 0 0 chr1 145880035 145880081 -96784272 - LTR66 LTR ERVL -171 439 394 234 78 0 78 chr1 145880045 145880096 -96784257 + LTR66 LTR ERVL 398 444 -166 * 31019 111 17 25 chr1 145880096 145886487 -96777866 - L1PA7 LINE L1 -23 6446 17 1218 192 27 9 chr1 145886487 145886711 -96777642 + MSTB LTR MaLR 197 424 -2 436 225 101 21 chr1 145887711 145888170 -96776183 - MLT1E1 LTR MaLR -4 590 1 236 313 25 23 chr1 145888175 145888304 -96776049 - MIR SINE MIR -22 240 84 1120 237 4 12 chr1 145889154 145889403 -96774950 - MLT1D LTR MaLR 0 505 259 390 169 19 144 chr1 145889428 145889588 -96774765 - MLT1D LTR MaLR -486 140 1 630 302 17 0 chr1 145891300 145891472 -96772881 + MER45A DNA AcHobo 4 178 0 203 259 59 59 chr1 145891566 145891651 -96772702 + L2 LINE L2 3186 3270 -2 21 82 0 0 chr1 145895215 145895264 -96769089 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr1 145895341 145895363 -96768990 + AT_rich Low_complexity Low_complexity 1 22 0 398 188 210 97 chr1 145895560 145895736 -96768617 + MLT1A1 LTR MaLR 1 196 -169 263 34 3 0 chr1 145896044 145896104 -96768249 + MLT1A2 LTR MaLR 167 207 -167 241 67 0 0 chr1 145896196 145896226 -96768127 + MLT1A1 LTR MaLR 167 196 -169 793 159 22 145 chr1 145896316 145896543 -96767810 + MLT1A1 LTR MaLR 167 365 0 268 348 76 0 chr1 145896920 145897038 -96767315 - MIR SINE MIR -87 175 49 951 190 35 11 chr1 145897186 145897415 -96766938 - L1M4 LINE L1 -616 5562 5330 870 258 88 3 chr1 145897416 145897734 -96766619 + L2 LINE L2 1836 2180 -1134 1173 216 54 131 chr1 145897750 145898255 -96766098 + MLT1E2 LTR MaLR 35 503 -2 1195 268 195 20 chr1 145898262 145899083 -96765270 + L2 LINE L2 2189 3139 -174 497 278 8 0 chr1 145899197 145899323 -96765030 - MIR SINE MIR -133 129 3 4943 138 68 19 chr1 145899388 145899469 -96764884 + Tigger3b DNA MER2_type 1 77 -2951 1688 172 10 10 chr1 145899469 145899765 -96764588 + AluJo SINE Alu 1 296 -16 4943 138 68 19 chr1 145899765 145900575 -96763778 + Tigger3b DNA MER2_type 77 936 -295 2438 114 39 73 chr1 145900575 145901082 -96763271 + LTR21A LTR ERV1 1 490 -15 11814 185 47 33 chr1 145901082 145904958 -96759395 + HERVFH21 LTR ERV1 5 4261 -2393 5033 122 23 5 chr1 145904957 145906086 -96758267 + HERVFH21 LTR ERV1 3586 4802 -1727 * 796 119 0 0 chr1 145906061 145906179 -96758174 + HERVFH21 LTR ERV1 5630 5747 -782 * 2655 144 30 39 chr1 145906177 145906310 -96758043 + HERVFH21 LTR ERV1 6075 6208 -321 306 0 0 0 chr1 145906310 145906344 -96758009 + (CA)n Simple_repeat Simple_repeat 1 34 0 2655 144 30 39 chr1 145906344 145906669 -96757684 + HERVFH21 LTR ERV1 6208 6529 0 2272 123 48 67 chr1 145906669 145907164 -96757189 + LTR21A LTR ERV1 1 486 -19 2015 141 3 0 chr1 145907164 145907462 -96756891 + Tigger3b DNA MER2_type 932 1230 -1 1135 177 49 127 chr1 145907985 145908370 -96755983 - MLT1A2 LTR MaLR 0 374 20 189 342 25 25 chr1 145910551 145910630 -96753723 - MIR SINE MIR -65 143 65 2188 96 55 0 chr1 145911242 145911535 -96752818 + AluY SINE Alu 1 309 -2 21 57 0 0 chr1 145912095 145912130 -96752223 + AT_rich Low_complexity Low_complexity 1 35 0 388 288 11 1 chr1 145912867 145913001 -96751352 + L1M2 LINE L1 1578 1964 -4252 638 316 53 14 chr1 145913644 145914061 -96750292 + L1M2 LINE L1 2522 2954 -3261 283 313 67 14 chr1 145914127 145914559 -96749794 + L1M2 LINE L1 3095 3549 -2666 304 263 11 53 chr1 145914692 145914787 -96749566 + MLT1J2 LTR MaLR 39 129 -321 229 241 92 35 chr1 145915829 145915916 -96748437 - L3b LINE CR1 -196 1387 1296 408 143 0 0 chr1 145916753 145916823 -96747530 + (TG)n Simple_repeat Simple_repeat 2 71 0 1682 190 102 11 chr1 145917164 145917527 -96746826 + MSTD LTR MaLR 1 396 0 26 30 0 0 chr1 145917987 145918020 -96746333 + AT_rich Low_complexity Low_complexity 1 33 0 2225 246 100 31 chr1 145918165 145918917 -96745436 + L1M4 LINE L1 26 829 -5713 1347 272 39 71 chr1 145918944 145919510 -96744843 + MER77 LTR ERV1 52 599 -6 1355 301 15 15 chr1 145919609 145920015 -96744338 + MER77-int LTR ERV1 13 418 -3773 354 339 62 8 chr1 145920007 145920137 -96744216 + MER21-int LTR ERV1 297 433 -3758 * 44309 41 6 7 chr1 145920401 145926554 -96737799 - L1PA4 LINE L1 -3 6152 9 287 295 0 0 chr1 145927597 145927658 -96736695 + MIR SINE MIR 83 143 -65 2337 124 21 13 chr1 145928155 145928527 -96735826 - THE1C LTR MaLR 0 375 1 384 243 120 70 chr1 145928678 145928937 -96735416 + L3 LINE CR1 1258 1529 -48 342 0 0 0 chr1 145928978 145929016 -96735337 + (CA)n Simple_repeat Simple_repeat 1 38 0 975 246 65 57 chr1 145929026 145929396 -96734957 - MLT2D LTR ERVL -70 394 22 315 280 203 7 chr1 145930699 145930842 -96733511 - MER5B DNA MER1_type -6 172 2 259 314 248 0 chr1 145931408 145931545 -96732808 + MIR SINE MIR 2 172 -90 189 74 0 0 chr1 145931594 145931621 -96732732 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6186 102 3 10 chr1 145931621 145932751 -96731602 - L1PB1 LINE L1 -10 6141 5017 614 264 129 67 chr1 145932794 145933268 -96731085 - L2 LINE L2 -174 3139 2642 596 179 75 84 chr1 145933269 145933471 -96730882 + L1MB7 LINE L1 5571 5773 -411 703 168 22 44 chr1 145933478 145933615 -96730738 + AluJo SINE Alu 2 135 -177 2239 162 13 3 chr1 145933619 145934008 -96730345 + L1MB7 LINE L1 5769 6161 -23 467 311 133 23 chr1 145934022 145934369 -96729984 - L2 LINE L2 -1480 1834 1450 312 27 0 0 chr1 145934570 145934607 -96729746 + (GA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr1 145934700 145934728 -96729625 + AT_rich Low_complexity Low_complexity 1 28 0 4885 163 45 15 chr1 145935433 145935760 -96728593 - MER4D LTR ERV1 -8 895 579 18305 31 6 0 chr1 145935760 145938691 -96725662 + L1PA4 LINE L1 3210 6152 -3 4885 163 45 15 chr1 145938691 145939232 -96725121 - MER4D LTR ERV1 -324 579 1 319 269 0 11 chr1 145939831 145939924 -96724429 - MIR SINE MIR -118 144 53 2153 174 28 9 chr1 145940486 145940910 -96723443 - LTR56 LTR ERV1 -1 444 13 1564 227 125 57 chr1 145941015 145941646 -96722707 + MER50 LTR ERV1 10 683 -51 256 289 68 105 chr1 145941998 145942188 -96722165 - MIR SINE MIR -15 247 65 2189 158 70 57 chr1 145942202 145942466 -96721887 + LTR26B LTR ERV1 1 275 -256 1782 156 7 0 chr1 145942466 145942754 -96721599 + AluSq SINE Alu 1 290 -23 2189 158 70 57 chr1 145942754 145942945 -96721408 + LTR26B LTR ERV1 275 462 -69 2437 273 34 36 chr1 145943742 145944518 -96719835 + L1M4 LINE L1 38 811 -5731 3239 149 16 25 chr1 145944518 145945091 -96719262 - MER4B LTR ERV1 0 779 33 3304 168 15 77 chr1 145945091 145945828 -96718525 - LTR8 LTR ERV1 0 691 1 3239 149 16 25 chr1 145945828 145945861 -96718492 - MER4B LTR ERV1 -746 33 1 489 247 118 18 chr1 145945904 145946074 -96718279 + MER77 LTR ERV1 41 227 -378 398 243 98 92 chr1 145946053 145946226 -96718127 + MER77 LTR ERV1 155 328 -277 * 232 0 62 0 chr1 145946238 145946270 -96718083 - MER4D LTR ERV1 -8 895 862 * 4495 149 36 16 chr1 145946267 145947006 -96717347 - MER4D LTR ERV1 -149 754 1 397 244 7 82 chr1 145947044 145947179 -96717174 - MER21-int LTR ERV1 -1710 2481 2357 1662 203 0 3 chr1 145947179 145947490 -96716863 - AluJb SINE Alu -2 310 1 4496 149 16 6 chr1 145947635 145948339 -96716014 + MER50 LTR ERV1 1 711 -23 552 264 26 39 chr1 145948345 145948500 -96715853 - MER21B LTR ERV1 -615 248 96 915 293 29 0 chr1 145948762 145949008 -96715345 - MIR SINE MIR -2 260 8 414 168 112 91 chr1 145949056 145949199 -96715154 + LTR8A LTR ERV1 1 146 -581 906 139 39 39 chr1 145949210 145949390 -96714963 + MER30 DNA MER1_type 1 180 -50 2678 187 51 15 chr1 145949412 145949957 -96714396 + LTR8A LTR ERV1 160 724 -3 200 256 79 70 chr1 145950109 145950324 -96714029 + L2 LINE L2 1963 2179 -1135 252 149 0 0 chr1 145950324 145950371 -96713982 + (TC)n Simple_repeat Simple_repeat 1 47 0 1418 189 0 31 chr1 145950377 145950663 -96713690 - AluJo SINE Alu -35 277 1 401 325 181 4 chr1 145950685 145950934 -96713419 + L2 LINE L2 2189 2481 -833 187 348 35 26 chr1 145950964 145951079 -96713274 - MIR SINE MIR -31 231 116 840 341 35 4 chr1 145952037 145952474 -96711879 + MER70-int LTR ERVL 2709 3170 -2315 2628 131 44 5 chr1 145952629 145953041 -96711312 + MSTA LTR MaLR 1 428 0 333 327 48 30 chr1 145953062 145953230 -96711123 + MER70-int LTR ERVL 2118 2288 -2735 611 214 21 21 chr1 145953256 145953401 -96710952 - Zaphod DNA AcHobo 0 4031 3887 3089 181 52 56 chr1 145954505 145955202 -96709151 + LTR8A LTR ERV1 34 727 0 8963 157 37 12 chr1 145956418 145958582 -96705771 + L1MA8 LINE L1 3579 5815 -476 294 95 0 0 chr1 145958582 145958624 -96705729 + (TG)n Simple_repeat Simple_repeat 2 43 0 8963 157 37 12 chr1 145958624 145959103 -96705250 + L1MA8 LINE L1 5815 6281 -10 520 239 75 19 chr1 145959153 145959312 -96705041 - MER5B DNA MER1_type -7 171 4 504 205 160 0 chr1 145959339 145959471 -96704882 + MER5A DNA MER1_type 4 160 -29 834 203 62 0 chr1 145961086 145961263 -96703090 - MER5A DNA MER1_type 0 189 2 218 319 160 30 chr1 145961401 145961570 -96702783 - MIR3 SINE MIR -2 206 16 331 280 0 24 chr1 145961937 145962063 -96702290 + MIR SINE MIR 39 160 -62 664 282 65 85 chr1 145962133 145962520 -96701833 - L2 LINE L2 -5 3308 2930 445 365 16 0 chr1 145963603 145963858 -96700495 - L1M4 LINE L1 -1905 4241 3983 23464 176 15 27 chr1 145963873 145969169 -96695184 + L1P3 LINE L1 11 5269 -1192 1107 136 22 22 chr1 145969169 145969345 -96695008 + L1PA10 LINE L1 5978 6161 -7 547 328 122 17 chr1 145969350 145969710 -96694643 - L1M4 LINE L1 -2170 3976 3579 23 0 0 0 chr1 145969757 145969780 -96694573 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 145970918 145970940 -96693413 + AT_rich Low_complexity Low_complexity 1 22 0 749 279 34 21 chr1 145971052 145971289 -96693064 + MIR SINE MIR 5 244 -18 1009 176 0 31 chr1 145971603 145971796 -96692557 - MSTC LTR MaLR -17 411 225 1243 126 34 75 chr1 145971930 145972013 -96692340 - MSTC LTR MaLR -199 229 144 1949 164 31 65 chr1 145972013 145972427 -96691926 - MER57A LTR ERV1 -3 400 1 1243 126 34 75 chr1 145972427 145972582 -96691771 - MSTC LTR MaLR -284 144 1 1028 183 73 0 chr1 145972755 145972826 -96691527 - AluJo SINE Alu -107 205 141 280 0 0 48 chr1 145972826 145972868 -96691485 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1028 183 73 0 chr1 145972868 145972987 -96691366 - AluJo SINE Alu -171 141 1 388 274 86 43 chr1 145972987 145973173 -96691180 - L1M4 LINE L1 -2796 3350 3157 329 327 40 7 chr1 145973211 145973361 -96690992 - MLT1L LTR MaLR -89 526 372 4283 33 0 12 chr1 145973972 145974487 -96689866 - L1PA4 LINE L1 0 6155 5647 211 211 0 0 chr1 145974782 145974834 -96689519 + (TA)n Simple_repeat Simple_repeat 2 53 0 316 200 146 45 chr1 145976578 145976688 -96687665 - L2 LINE L2 -7 3306 3186 382 203 25 85 chr1 145977613 145977731 -96686622 + MER5B DNA MER1_type 68 178 0 688 161 0 0 chr1 145978084 145978202 -96686151 - L1MA3 LINE L1 0 6305 6188 1370 119 5 9 chr1 145978203 145978413 -96685940 + L1M2 LINE L1 5532 5740 -560 288 291 32 38 chr1 145978617 145978775 -96685578 + HAL1 LINE L1 2245 2401 -106 258 32 0 0 chr1 145978841 145978872 -96685481 + (TG)n Simple_repeat Simple_repeat 2 32 0 409 314 160 0 chr1 145978935 145979091 -96685262 - MER5A DNA MER1_type 0 189 9 532 262 18 30 chr1 145980488 145980652 -96683701 - MIR3 SINE MIR -27 181 20 1801 185 20 35 chr1 145981675 145982070 -96682283 - MLT1B LTR MaLR 0 390 2 787 231 51 10 chr1 145982592 145982787 -96681566 + MER63A DNA MER1_type 1 203 -7 290 276 224 15 chr1 145983122 145983256 -96681097 + MIR SINE MIR 28 189 -73 515 259 24 6 chr1 145983516 145983664 -96680689 + MIR SINE MIR 19 167 -63 284 180 0 16 chr1 145983775 145983836 -96680517 - MER52A LTR ERV1 -10 1745 1686 * 2958 223 108 23 chr1 145983831 145984739 -96679614 - MER52A LTR ERV1 -560 1195 50 289 234 25 38 chr1 145985874 145986032 -96678321 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 235 351 18 27 chr1 145986339 145986450 -96677903 + MIR3 SINE MIR 12 121 -87 868 258 40 9 chr1 145987780 145988005 -96676348 - MIR SINE MIR -11 251 20 3385 172 101 102 chr1 145988378 145988809 -96675544 + L1MC3 LINE L1 6714 7144 -641 260 253 44 44 chr1 145988809 145988900 -96675453 + MLT1H LTR MaLR 83 173 -376 3385 172 101 102 chr1 145988900 145989445 -96674908 + L1MC3 LINE L1 7144 7779 -6 303 328 170 8 chr1 145989693 145989934 -96674419 - L2 LINE L2 -3 3310 3031 1046 257 199 45 chr1 145989995 145990699 -96673654 + L2 LINE L2 1914 2783 -531 2017 111 0 10 chr1 145990699 145990997 -96673356 + AluSg SINE Alu 1 295 -15 1046 257 199 45 chr1 145990997 145991175 -96673178 + L2 LINE L2 2783 2932 -382 819 289 147 12 chr1 145991161 145991570 -96672783 + L2 LINE L2 2828 3291 -22 * 800 281 45 12 chr1 145991588 145991834 -96672519 + MIR SINE MIR 6 259 -3 594 244 190 16 chr1 145991849 145992160 -96672193 + HAL1 LINE L1 2143 2507 0 288 211 0 0 chr1 145993323 145993394 -96670959 + CT-rich Low_complexity Low_complexity 3 73 0 273 326 143 33 chr1 145993661 145994026 -96670327 - L2 LINE L2 -41 3231 2827 271 313 62 0 chr1 145994199 145994295 -96670058 - L2 LINE L2 0 3272 3171 322 220 220 0 chr1 145994392 145994492 -96669861 - MER45A DNA AcHobo 0 178 57 204 356 59 22 chr1 145994512 145994647 -96669706 - L2 LINE L2 -271 3001 2862 1703 180 3 29 chr1 145995881 145996197 -96668156 + AluJb SINE Alu 3 310 -2 482 166 26 99 chr1 145996505 145996656 -96667697 + MLT1D LTR MaLR 1 140 -486 984 252 8 4 chr1 145996681 145996927 -96667426 + MLT1D LTR MaLR 259 505 0 2104 114 3 21 chr1 145997835 145998145 -96666208 + AluSx SINE Alu 1 305 0 270 297 126 29 chr1 145998686 145998861 -96665492 - MIR3 SINE MIR 0 208 17 1222 137 0 0 chr1 145999355 145999523 -96664830 + AluJb SINE Alu 134 301 -11 189 0 0 0 chr1 145999523 145999544 -96664809 + (TA)n Simple_repeat Simple_repeat 2 22 0 200 139 0 23 chr1 146000239 146000282 -96664071 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 257 267 36 29 chr1 146000999 146001129 -96663224 - L1M4 LINE L1 -351 5823 5695 2299 95 44 0 chr1 146001272 146001567 -96662786 + AluSc SINE Alu 1 308 -1 291 54 0 0 chr1 146001694 146001731 -96662622 + (A)n Simple_repeat Simple_repeat 1 37 0 1648 163 74 3 chr1 146002928 146003211 -96661142 - AluJb SINE Alu -9 303 1 326 272 81 44 chr1 146003752 146003927 -96660426 - MIR SINE MIR -65 143 2 1984 137 4 0 chr1 146004877 146005148 -96659205 - AluSq SINE Alu -41 272 1 488 273 29 35 chr1 146005715 146005887 -96658466 - MIR3 SINE MIR -18 190 20 180 186 70 0 chr1 146007038 146007081 -96657272 - L2 LINE L2 -6 3307 3262 794 238 45 5 chr1 146007628 146007830 -96656523 + MER63A DNA MER1_type 1 210 0 304 269 224 15 chr1 146008231 146008365 -96655988 + MIR SINE MIR 28 189 -73 514 261 85 7 chr1 146008594 146008747 -96655606 + MIR SINE MIR 2 166 -96 380 290 93 31 chr1 146009402 146009564 -96654789 + MIR SINE MIR 21 192 -70 834 111 7 56 chr1 146009748 146009892 -96654461 + FLAM_C SINE Alu 1 137 -6 377 171 61 12 chr1 146010412 146010494 -96653859 - MIR SINE MIR -11 251 166 434 271 60 23 chr1 146010598 146010731 -96653622 - MIR SINE MIR -105 157 20 4240 178 75 21 chr1 146011092 146012115 -96652238 + L1MC3 LINE L1 6702 7779 -6 191 310 112 0 chr1 146012360 146012476 -96651877 - L2 LINE L2 -3 3269 3141 833 199 23 0 chr1 146012498 146012669 -96651684 - MLT1A1 LTR MaLR -190 175 1 339 239 120 8 chr1 146012686 146012803 -96651550 - L1M4 LINE L1 -2420 5388 5259 225 143 102 0 chr1 146014784 146014833 -96649520 - L1MC2 LINE L1 -5 6339 6286 * 2156 121 140 19 chr1 146014803 146015225 -96649128 - L1MC3 LINE L1 -24 7761 7289 1991 154 3 3 chr1 146015363 146015661 -96648692 - AluJb SINE Alu -12 300 3 388 209 18 64 chr1 146015866 146015976 -96648377 - MIR SINE MIR -132 130 26 185 195 24 0 chr1 146016860 146016901 -96647452 - MIR SINE MIR -7 255 214 2217 122 3 0 chr1 146017360 146017663 -96646690 + AluSx SINE Alu 1 304 -8 5264 143 50 6 chr1 146018021 146018886 -96645467 + MER4D LTR ERV1 1 903 0 238 273 36 9 chr1 146020037 146020147 -96644206 + L1ME3A LINE L1 5313 5425 -2383 2613 49 7 0 chr1 146020290 146020596 -96643757 - AluY SINE Alu -3 308 1 24 0 0 0 chr1 146021163 146021187 -96643166 + AT_rich Low_complexity Low_complexity 1 24 0 218 292 0 0 chr1 146021600 146021648 -96642705 - L2 LINE L2 -15 3257 3210 318 289 10 21 chr1 146021747 146021844 -96642509 + L1ME3A LINE L1 5865 5960 -204 366 309 69 34 chr1 146021913 146022088 -96642265 + L1ME3A LINE L1 5989 6169 -1 244 273 36 9 chr1 146022215 146022325 -96642028 - L1M LINE L1 -2383 5425 5313 181 202 45 124 chr1 146023161 146023250 -96641103 + MER5C DNA MER1_type 2 83 -241 383 269 51 39 chr1 146023436 146023592 -96640761 - L2 LINE L2 0 3313 3156 890 154 0 0 chr1 146023599 146023735 -96640618 + FLAM_C SINE Alu 5 140 -3 724 289 53 19 chr1 146023737 146024059 -96640294 - L2 LINE L2 -157 3156 2824 251 268 45 36 chr1 146024085 146024197 -96640156 - MIR3 SINE MIR -6 202 90 258 241 75 83 chr1 146026742 146026875 -96637478 + L2 LINE L2 2366 2497 -817 249 257 83 37 chr1 146026926 146027035 -96637318 - L2 LINE L2 -1 3271 3158 367 213 27 0 chr1 146027190 146027265 -96637088 + MIR SINE MIR 76 152 -110 874 272 29 8 chr1 146027312 146027555 -96636798 - MIR SINE MIR -1 261 14 675 251 139 0 chr1 146027585 146027800 -96636553 - MIR SINE MIR -3 259 15 757 225 113 0 chr1 146028639 146028799 -96635554 + MER45A DNA AcHobo 1 178 0 326 273 112 107 chr1 146028836 146029078 -96635275 + MIR SINE MIR 19 261 -1 2189 229 58 22 chr1 146030472 146031008 -96633345 - MLT1H1 LTR MaLR 0 555 1 431 294 130 0 chr1 146031418 146031564 -96632789 - MIR SINE MIR -12 250 86 363 328 17 9 chr1 146032438 146032554 -96631799 - MIR3 SINE MIR -77 131 15 454 238 49 8 chr1 146033327 146033449 -96630904 - MLT1L LTR MaLR 0 615 489 2460 156 3 8 chr1 146033553 146033945 -96630408 - MLT1B LTR MaLR 0 390 1 472 333 92 0 chr1 146034162 146034315 -96630038 + L2 LINE L2 3103 3269 -3 273 306 0 0 chr1 146034539 146034611 -96629742 + L2 LINE L2 3242 3313 0 1618 182 0 69 chr1 146034810 146035129 -96629224 + AluJo SINE Alu 1 297 -15 866 272 226 41 chr1 146036634 146037200 -96627153 + L3 LINE CR1 748 1418 -159 245 343 0 0 chr1 146037415 146037482 -96626871 + L3 LINE CR1 1510 1576 -1 209 200 20 20 chr1 146038446 146038496 -96625857 - MIR SINE MIR -113 149 100 229 250 0 0 chr1 146038576 146038624 -96625729 - MIR SINE MIR -110 152 105 378 306 85 7 chr1 146038845 146039050 -96625303 - MIR SINE MIR -5 257 32 590 240 66 41 chr1 146040500 146040696 -96623657 - MIR SINE MIR -8 254 54 348 43 0 0 chr1 146043057 146043103 -96621250 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr1 146043935 146043956 -96620397 + AT_rich Low_complexity Low_complexity 1 21 0 1336 158 79 46 chr1 146047230 146047558 -96616795 - MER44D DNA MER2_type 0 609 1 1814 139 62 3 chr1 146048365 146048653 -96615700 + AluSx SINE Alu 1 305 -7 253 320 48 34 chr1 146048811 146048958 -96615395 - MIR SINE MIR -10 252 104 189 293 94 38 chr1 146049095 146049201 -96615152 - L2 LINE L2 -83 3230 3119 1123 256 50 9 chr1 146049456 146049819 -96614534 - L1MC4 LINE L1 0 8042 7552 702 216 114 0 chr1 146049850 146050017 -96614336 - MIR SINE MIR -32 230 45 2299 101 10 0 chr1 146050472 146050770 -96613583 + AluSg SINE Alu 1 301 -9 2239 125 0 3 chr1 146052766 146053070 -96611283 + AluSx SINE Alu 1 303 -9 215 296 143 31 chr1 146054258 146054454 -96609899 - L2 LINE L2 0 3313 3096 237 132 0 0 chr1 146056336 146056374 -96607979 + (T)n Simple_repeat Simple_repeat 1 38 0 215 105 70 18 chr1 146059266 146059323 -96605030 + (TA)n Simple_repeat Simple_repeat 2 61 0 1302 186 66 7 chr1 146059706 146059980 -96604373 + L1MB7 LINE L1 5883 6172 -12 448 252 9 0 chr1 146061023 146061134 -96603219 - MIR SINE MIR -59 203 92 451 314 110 20 chr1 146061213 146061512 -96602841 + L2 LINE L2 2945 3270 -2 378 261 269 0 chr1 146062203 146062333 -96602020 + MIR SINE MIR 57 221 -41 188 282 291 18 chr1 146062415 146062525 -96601828 - MIR3 SINE MIR -49 159 20 752 234 31 29 chr1 146063609 146063826 -96600527 - MIR SINE MIR -44 218 3 232 164 119 30 chr1 146063991 146064058 -96600295 - L2 LINE L2 0 3272 3200 270 261 134 0 chr1 146064140 146064259 -96600094 - L2 LINE L2 -1 3271 3137 519 243 28 0 chr1 146066252 146066396 -96597957 + MER115 DNA AcHobo 118 265 -428 347 294 16 24 chr1 146066910 146067036 -96597317 - L2 LINE L2 -5 3267 3143 420 229 37 0 chr1 146067679 146067788 -96596565 - MER81 DNA DNA -1 113 1 204 309 6 23 chr1 146068077 146068252 -96596101 + (CA)n Simple_repeat Simple_repeat 2 173 0 1955 156 3 0 chr1 146069908 146070196 -96594157 + AluSx SINE Alu 11 299 -13 465 176 0 12 chr1 146070704 146070789 -96593564 + FRAM/FAM SINE Alu 1 84 -92 236 193 0 35 chr1 146073790 146073847 -96590506 + (TTGGGG)n Simple_repeat Simple_repeat 1 55 0 216 175 0 63 chr1 146074289 146074352 -96590001 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr1 146075999 146076020 -96588333 + AT_rich Low_complexity Low_complexity 1 21 0 470 301 97 22 chr1 146076240 146076466 -96587887 + MIR SINE MIR 15 257 -5 228 242 32 16 chr1 146077395 146077457 -96586896 + MIR SINE MIR 59 121 -141 462 185 125 152 chr1 146078221 146078287 -96586066 + MER5A DNA MER1_type 9 75 -114 2690 55 0 0 chr1 146078287 146078595 -96585758 + AluY SINE Alu 1 308 -3 462 185 125 152 chr1 146078595 146078607 -96585746 + MER5A DNA MER1_type 75 86 -103 2037 133 25 0 chr1 146078607 146078911 -96585442 + AluSx SINE Alu 1 311 0 462 185 125 152 chr1 146078911 146079014 -96585339 + MER5A DNA MER1_type 86 187 -2 249 321 197 7 chr1 146079062 146079199 -96585154 + MIR3 SINE MIR 19 181 -27 333 268 20 72 chr1 146079618 146079771 -96584582 - L2 LINE L2 -1 3312 3168 251 216 0 0 chr1 146079799 146079850 -96584503 - L2 LINE L2 0 3313 3263 2146 113 0 3 chr1 146079890 146080202 -96584151 + AluSx SINE Alu 3 312 0 2463 85 0 25 chr1 146080248 146080564 -96583789 + AluSg SINE Alu 1 308 -2 220 128 13 64 chr1 146080953 146081031 -96583322 + CT-rich Low_complexity Low_complexity 4 77 0 2221 112 3 0 chr1 146082217 146082511 -96581842 + AluSx SINE Alu 1 295 -17 237 240 0 0 chr1 146082856 146082906 -96581447 - L2 LINE L2 0 3272 3223 2367 113 7 0 chr1 146083111 146083421 -96580932 - AluSx SINE Alu 0 312 1 2397 93 7 0 chr1 146083663 146083973 -96580380 - AluSp SINE Alu -1 312 1 207 305 119 23 chr1 146083974 146084151 -96580202 - L2 LINE L2 -601 2713 2520 180 111 0 0 chr1 146084151 146084178 -96580175 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 528 296 81 83 chr1 146084178 146084621 -96579732 - L2 LINE L2 0 3272 2831 261 83 0 0 chr1 146085047 146085083 -96579270 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 2533 85 0 16 chr1 146085663 146085981 -96578372 - AluSq SINE Alu 0 313 1 232 261 15 0 chr1 146086380 146086445 -96577908 - MIR SINE MIR -121 141 76 281 319 64 85 chr1 146086533 146086815 -96577538 - L2 LINE L2 -2 3270 2995 2352 115 0 3 chr1 146086819 146087132 -96577221 + AluSx SINE Alu 1 312 0 999 156 111 10 chr1 146087160 146087359 -96576994 + AluJo SINE Alu 87 305 -7 1081 179 5 27 chr1 146089971 146090194 -96574159 - MER20 DNA MER1_type 0 219 2 286 344 138 12 chr1 146090795 146090955 -96573398 - MIR3 SINE MIR -19 189 10 1711 170 69 0 chr1 146091039 146091328 -96573025 - AluSx SINE Alu -3 309 1 807 71 27 0 chr1 146091502 146091614 -96572739 - Tigger3(Golem) DNA MER2_type -762 2267 2153 21 0 0 0 chr1 146091693 146091714 -96572639 + AT_rich Low_complexity Low_complexity 1 21 0 5933 115 39 102 chr1 146091714 146092225 -96572128 - Tigger3b DNA MER2_type -1797 1231 690 1872 119 22 4 chr1 146092225 146092493 -96571860 - AluSx SINE Alu -2 310 38 5933 115 39 102 chr1 146092493 146092741 -96571612 - Tigger3b DNA MER2_type -2338 690 428 2376 76 3 7 chr1 146092741 146093042 -96571311 + AluY SINE Alu 1 300 -11 5933 115 39 102 chr1 146093042 146093062 -96571291 - Tigger3b DNA MER2_type -2600 428 408 1703 181 10 16 chr1 146093062 146093365 -96570988 + AluJb SINE Alu 9 309 -3 5933 115 39 102 chr1 146093365 146093853 -96570500 - Tigger3b DNA MER2_type -2620 408 41 326 210 0 48 chr1 146093872 146093934 -96570419 - L2 LINE L2 -9 3263 3205 2197 101 16 29 chr1 146094104 146094410 -96569943 - AluSx SINE Alu -10 302 1 499 276 67 38 chr1 146094500 146094815 -96569538 - L1ME4a LINE L1 -195 5926 5603 873 149 8 0 chr1 146094815 146094949 -96569404 + FRAM SINE Alu 28 162 -14 597 153 34 2 chr1 146095030 146095152 -96569201 + AluJb SINE Alu 1 118 -194 261 0 0 0 chr1 146095152 146095181 -96569172 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 597 153 34 2 chr1 146095181 146095296 -96569057 + AluJb SINE Alu 118 293 -19 883 219 46 80 chr1 146095299 146095407 -96568946 - MIR SINE MIR -11 251 141 854 161 0 29 chr1 146095407 146095544 -96568809 - FLAM_C SINE Alu 0 133 1 883 219 46 80 chr1 146095544 146095673 -96568680 - MIR SINE MIR -121 141 22 2675 43 0 0 chr1 146095931 146096236 -96568117 + AluY SINE Alu 1 305 -6 2031 134 0 6 chr1 146097052 146097366 -96566987 + AluSx SINE Alu 1 312 0 968 337 80 38 chr1 146097622 146098286 -96566067 + L2 LINE L2 1900 2591 -723 364 305 112 53 chr1 146099156 146099264 -96565089 + L2 LINE L2 2924 3024 -248 2371 52 3 36 chr1 146099264 146099570 -96564783 - AluY SINE Alu -15 296 1 364 305 112 53 chr1 146099570 146099782 -96564571 + L2 LINE L2 3024 3263 -9 892 253 108 44 chr1 146099895 146100253 -96564100 + L1MC4a LINE L1 5622 5673 -482 2049 123 0 27 chr1 146100253 146100584 -96563769 + AluSx SINE Alu 1 323 0 892 253 108 44 chr1 146100584 146100741 -96563612 + L1MC4a LINE L1 5673 5819 -336 2181 118 7 0 chr1 146100813 146101109 -96563244 + AluSx SINE Alu 1 298 -14 2205 96 14 0 chr1 146101959 146102277 -96562076 - AluSx SINE Alu 0 322 1 245 292 0 0 chr1 146102287 146102352 -96562001 - L2 LINE L2 0 3313 3249 658 220 173 19 chr1 146102372 146102528 -96561825 + MER63A DNA MER1_type 36 210 0 414 241 46 0 chr1 146102574 146102682 -96561671 - MIR SINE MIR -1 261 149 545 211 57 74 chr1 146102750 146102925 -96561428 + MER63A DNA MER1_type 38 209 -1 197 332 80 13 chr1 146102938 146103167 -96561186 - L2 LINE L2 -223 3090 2744 * 387 333 12 12 chr1 146103162 146103324 -96561029 + MIR SINE MIR 47 208 -54 810 229 173 21 chr1 146103451 146103735 -96560618 - MER102a DNA MER1_type -3 327 1 954 108 0 8 chr1 146104230 146104360 -96559993 - FLAM_C SINE Alu -2 131 3 493 316 22 26 chr1 146104440 146104668 -96559685 + MLT1J1 LTR MaLR 220 446 0 2327 93 0 0 chr1 146104680 146104980 -96559373 + AluSg SINE Alu 4 303 -7 529 197 63 79 chr1 146105030 146105284 -96559069 - L1MC5 LINE L1 -230 7731 7482 180 176 0 0 chr1 146105330 146105364 -96558989 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 358 236 141 19 chr1 146105380 146105646 -96558707 - L1MC5 LINE L1 -479 7482 7099 180 0 0 0 chr1 146105646 146105666 -96558687 + (T)n Simple_repeat Simple_repeat 1 20 0 600 176 33 52 chr1 146107434 146107587 -96556766 - L1MC5 LINE L1 -855 7106 6957 319 349 63 46 chr1 146107629 146107867 -96556486 - L1MEd LINE L1 -5732 387 146 2362 134 59 0 chr1 146107991 146108349 -96556004 + L1PB3 LINE L1 5776 6154 0 322 358 180 3 chr1 146108733 146109049 -96555304 - L2 LINE L2 -1329 1985 1614 210 328 148 52 chr1 146109467 146109927 -96554426 - L2 LINE L2 -2320 994 491 250 310 11 23 chr1 146109927 146110014 -96554339 + MIR3 SINE MIR 112 197 -11 24 0 0 51 chr1 146111128 146111148 -96553205 + AT_rich Low_complexity Low_complexity 1 20 -17 2360 100 0 0 chr1 146111148 146111457 -96552896 + AluSg SINE Alu 1 309 -1 24 0 0 51 chr1 146111457 146111475 -96552878 + AT_rich Low_complexity Low_complexity 20 37 0 1258 96 0 0 chr1 146111624 146111791 -96552562 - AluYa5 SINE Alu -9 302 136 259 325 100 40 chr1 146111990 146112239 -96552114 - L1ME LINE L1 -488 5633 5370 285 164 82 0 chr1 146112250 146112311 -96552042 - AluSc SINE Alu -8 291 226 1097 143 11 11 chr1 146112314 146112489 -96551864 - AluJo SINE Alu -137 175 1 760 241 25 55 chr1 146112678 146112914 -96551439 - MIR SINE MIR -3 259 31 3205 241 7 43 chr1 146113052 146113539 -96550814 + L1MEc LINE L1 37 485 -5911 2205 145 0 0 chr1 146113539 146113850 -96550503 + AluSx SINE Alu 1 311 -1 3205 241 7 43 chr1 146113850 146114180 -96550173 + L1MEc LINE L1 485 825 -5571 10814 55 7 3 chr1 146114182 146116249 -96548104 + L1PA6 LINE L1 4078 6148 -6 836 211 6 0 chr1 146116249 146116429 -96547924 + L1M4 LINE L1 3837 4017 -2129 * 1951 258 65 23 chr1 146116427 146117223 -96547130 + L1MEc LINE L1 810 1639 -4757 1283 126 10 34 chr1 146117224 146117462 -96546891 + AluSg/x SINE Alu 81 313 0 1743 185 13 3 chr1 146117469 146117771 -96546582 + AluJb SINE Alu 1 305 -7 4880 219 44 19 chr1 146117771 146118670 -96545683 + L1MEc LINE L1 1649 2524 -3691 1880 191 41 22 chr1 146118670 146119037 -96545316 + MLT1A2 LTR MaLR 1 374 0 4880 219 44 19 chr1 146119037 146119807 -96544546 + L1MEc LINE L1 2524 4355 -1860 2333 98 3 7 chr1 146121767 146122072 -96542281 - AluSx SINE Alu -8 304 1 4408 166 73 42 chr1 146122131 146123425 -96540928 + L1MB4 LINE L1 4344 5694 -555 1937 150 14 3 chr1 146123425 146123719 -96540634 + AluJo SINE Alu 3 299 -13 4408 166 73 42 chr1 146123719 146124275 -96540078 + L1MB4 LINE L1 5694 6231 -18 212 103 69 0 chr1 146124276 146124334 -96540019 + (TA)n Simple_repeat Simple_repeat 2 63 0 5195 191 47 172 chr1 146124345 146124562 -96539791 + L1MEc LINE L1 2135 2378 -3837 2145 133 126 31 chr1 146124562 146124952 -96539401 - MSTA LTR MaLR 0 428 2 5195 191 47 172 chr1 146124952 146125097 -96539256 + L1MEc LINE L1 2378 2540 -3675 2150 121 0 3 chr1 146125097 146125387 -96538966 + AluSx SINE Alu 1 289 -23 2180 102 3 0 chr1 146125392 146125710 -96538643 + AluSx SINE Alu 1 319 0 5195 191 47 172 chr1 146125710 146126335 -96538018 + L1MEc LINE L1 2544 3246 -2969 859 169 0 29 chr1 146126335 146126471 -96537882 - FLAM_C SINE Alu -1 132 1 5195 191 47 172 chr1 146126471 146127225 -96537128 + L1MEc LINE L1 3246 3427 -2788 2210 109 0 0 chr1 146127225 146127535 -96536818 + AluSq SINE Alu 1 310 0 5195 191 47 172 chr1 146127535 146128470 -96535883 + L1MEc LINE L1 3427 4477 -1738 881 228 92 78 chr1 146128440 146128787 -96535566 + L1ME1 LINE L1 5865 6216 -19 * 1508 186 0 7 chr1 146128822 146129091 -96535262 - AluJo SINE Alu -7 305 39 819 181 134 32 chr1 146129817 146130033 -96534320 + MIR SINE MIR 25 262 0 236 311 17 59 chr1 146130610 146130729 -96533624 + MIR SINE MIR 51 164 -98 1515 101 101 0 chr1 146130817 146131026 -96533327 + MER30 DNA MER1_type 1 230 0 2283 49 0 0 chr1 146131392 146131656 -96532697 + AluY SINE Alu 45 308 -3 332 232 126 11 chr1 146131679 146131774 -96532579 + Charlie7 DNA MER1_type 111 216 -2396 2273 208 110 51 chr1 146131843 146132570 -96531783 + Charlie7 DNA MER1_type 1460 2229 -383 2209 91 3 3 chr1 146132733 146133019 -96531334 - AluSx SINE Alu -26 286 1 45 0 0 0 chr1 146133548 146133593 -96530760 + AT_rich Low_complexity Low_complexity 1 45 0 1766 66 29 12 chr1 146133594 146133835 -96530518 - AluSx SINE Alu -24 288 44 308 281 146 89 chr1 146134244 146134910 -96529443 - L1M2 LINE L1 -5599 1250 547 25 65 0 0 chr1 146134969 146135015 -96529338 + GC_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr1 146135509 146135532 -96528821 + AT_rich Low_complexity Low_complexity 1 23 0 270 176 0 0 chr1 146136008 146136059 -96528294 + T-rich Low_complexity Low_complexity 1 51 0 477 236 14 88 chr1 146137969 146138190 -96526163 - MIR SINE MIR -46 216 20 341 319 50 25 chr1 146138813 146138932 -96525421 + L2 LINE L2 3148 3269 -3 309 237 158 36 chr1 146139564 146139703 -96524650 + MIR3 SINE MIR 38 193 -15 496 299 22 38 chr1 146141157 146141341 -96523012 + MIR3 SINE MIR 13 193 -15 1795 158 34 3 chr1 146141573 146141864 -96522489 - AluJb SINE Alu -12 300 1 2371 84 10 7 chr1 146142552 146142862 -96521491 - AluSx SINE Alu -1 311 1 244 353 92 22 chr1 146143259 146143443 -96520910 - L2 LINE L2 -610 2704 2508 1980 126 0 7 chr1 146143457 146143767 -96520586 - AluSq SINE Alu 0 308 1 2358 106 0 0 chr1 146143989 146144301 -96520052 + AluSx SINE Alu 1 312 0 324 267 47 0 chr1 146144394 146144480 -96519873 - L1MC4 LINE L1 -1339 6703 6614 500 205 6 0 chr1 146144486 146144657 -96519696 + (TA)n Simple_repeat Simple_repeat 2 173 0 318 192 0 101 chr1 146144695 146144794 -96519559 - L1MC4 LINE L1 -1340 6702 6614 1830 59 5 0 chr1 146144956 146145176 -96519177 + AluSp SINE Alu 84 304 -9 1053 312 114 43 chr1 146146566 146147948 -96516405 - L2 LINE L2 -51 3221 1748 652 226 48 32 chr1 146148011 146148197 -96516156 - MER5A DNA MER1_type 0 189 1 288 271 29 0 chr1 146149365 146149435 -96514918 - L2 LINE L2 -4 3268 3197 332 271 21 10 chr1 146149786 146149882 -96514471 - MIR SINE MIR -109 153 57 4964 128 46 38 chr1 146150401 146151006 -96513347 - L1MB7 LINE L1 0 6184 5585 2144 117 0 7 chr1 146151006 146151320 -96513033 + AluSx SINE Alu 1 312 0 4964 128 46 38 chr1 146151320 146151386 -96512967 - L1MB7 LINE L1 -599 5585 5521 1915 160 3 7 chr1 146151386 146151693 -96512660 - AluJb SINE Alu -6 306 1 4964 128 46 38 chr1 146151693 146151910 -96512443 - L1MB7 LINE L1 -663 5521 5287 356 229 36 12 chr1 146151921 146152004 -96512349 + MIR3 SINE MIR 89 173 -35 505 264 44 13 chr1 146152133 146152292 -96512061 + MIR SINE MIR 99 262 0 706 250 167 33 chr1 146152418 146152948 -96511405 - MLT1G1 LTR MaLR -33 516 1 1830 134 20 27 chr1 146153182 146153480 -96510873 - AluJo SINE Alu -16 296 1 401 221 110 8 chr1 146155621 146155748 -96508605 - L2 LINE L2 -582 2732 2593 7466 170 37 10 chr1 146156155 146156796 -96507557 - L1MB7 LINE L1 -8 6176 5554 2316 107 0 0 chr1 146156796 146157094 -96507259 - AluSx SINE Alu -14 298 1 7466 170 37 10 chr1 146157094 146158792 -96505561 - L1MB7 LINE L1 -630 5554 3726 776 201 12 0 chr1 146160252 146160416 -96503937 - L1MA10 LINE L1 0 6334 6169 2182 67 11 4 chr1 146160432 146160700 -96503653 - AluY SINE Alu -8 303 34 2400 240 69 2 chr1 146160720 146161357 -96502996 - L1ME2 LINE L1 -166 5998 5319 3507 216 48 31 chr1 146161403 146161904 -96502449 - L1ME2 LINE L1 -964 5182 4691 2490 74 3 6 chr1 146161904 146162216 -96502137 - AluY SINE Alu 0 311 1 3507 216 48 31 chr1 146162216 146162718 -96501635 - L1ME2 LINE L1 -1455 4691 4162 2414 93 0 3 chr1 146162842 146163152 -96501201 - AluSg SINE Alu -1 309 1 915 164 7 13 chr1 146163604 146163785 -96500568 + AluJb SINE Alu 138 312 0 563 171 109 23 chr1 146163830 146164005 -96500348 - L1MC5 LINE L1 -117 7844 7655 2145 117 43 0 chr1 146164058 146164357 -96499996 + AluSx SINE Alu 1 312 0 196 274 63 32 chr1 146164382 146164477 -96499876 - MIR SINE MIR -14 248 151 216 232 18 0 chr1 146164689 146164745 -96499608 + L2 LINE L2 3216 3272 0 181 309 55 0 chr1 146165127 146165182 -96499171 - L2 LINE L2 -5 3308 3251 * 845 217 94 0 chr1 146165155 146165358 -96498995 - MIR SINE MIR -30 232 11 188 312 39 13 chr1 146165429 146165506 -96498847 - L2 LINE L2 -799 2515 2437 600 318 22 35 chr1 146165745 146166060 -96498293 - L2 LINE L2 -1319 1995 1685 688 192 0 0 chr1 146166062 146166182 -96498171 + FRAM SINE Alu 57 176 0 336 24 0 0 chr1 146167277 146167318 -96497035 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 245 153 0 chr1 146167750 146167848 -96496505 - MIR SINE MIR -6 256 144 6000 165 47 19 chr1 146168076 146169880 -96494473 - L1MB8 LINE L1 -7 6171 4302 1631 134 73 29 chr1 146169880 146170155 -96494198 + AluJo SINE Alu 11 297 -15 6000 165 47 19 chr1 146170155 146170388 -96493965 - L1MB8 LINE L1 -1876 4302 4077 888 154 0 7 chr1 146170390 146170526 -96493827 - AluJo SINE Alu -177 135 1 368 158 105 0 chr1 146170528 146170604 -96493749 - L1MB8 LINE L1 -2053 4093 4010 212 171 49 0 chr1 146171902 146171943 -96492410 + MIR SINE MIR 33 75 -133 1713 173 39 24 chr1 146171985 146172144 -96492209 - MLT1A2 LTR MaLR -33 341 186 273 57 0 0 chr1 146172144 146172179 -96492174 + (TG)n Simple_repeat Simple_repeat 1 35 0 1713 173 39 24 chr1 146172179 146172355 -96491998 - MLT1A2 LTR MaLR -188 186 1 204 231 218 13 chr1 146172359 146172437 -96491916 + MIR3 SINE MIR 112 205 -3 293 287 84 116 chr1 146172554 146172864 -96491489 - L2 LINE L2 0 3313 3014 216 292 0 31 chr1 146174156 146174221 -96490132 - L3 LINE CR1 -5 1572 1510 734 181 0 23 chr1 146174307 146174440 -96489913 + FLAM_C SINE Alu 2 131 -12 194 281 0 62 chr1 146176446 146176510 -96487843 + MIR SINE MIR 79 138 -124 480 271 101 14 chr1 146176626 146176833 -96487520 - MIR SINE MIR 0 262 38 373 314 168 0 chr1 146176928 146177119 -96487234 + MIR SINE MIR 32 254 -8 707 254 27 14 chr1 146177284 146177483 -96486870 + MIR SINE MIR 3 201 -61 673 226 26 121 chr1 146177499 146177764 -96486589 - MIR SINE MIR -3 259 20 183 299 80 58 chr1 146177829 146177966 -96486387 - L2 LINE L2 -2 3311 3172 1917 147 11 0 chr1 146180315 146180601 -96483752 + AluSx SINE Alu 1 289 -23 255 290 47 28 chr1 146180645 146180752 -96483601 - MIR SINE MIR -73 189 81 560 259 46 35 chr1 146181227 146181401 -96482952 + MIR SINE MIR 28 203 -59 185 279 16 0 chr1 146181430 146181491 -96482862 - MIR SINE MIR -114 94 33 276 323 0 0 chr1 146181640 146181705 -96482648 - MIR SINE MIR -109 99 35 467 306 62 0 chr1 146181980 146182140 -96482213 - MIR SINE MIR -33 229 60 1315 159 105 7 chr1 146182649 146182944 -96481409 - MER33 DNA MER1_type 0 324 1 359 333 27 6 chr1 146183065 146183248 -96481105 + L2 LINE L2 2630 2816 -498 232 205 99 124 chr1 146183309 146183409 -96480944 - MIR SINE MIR -56 206 110 1848 159 10 32 chr1 146183409 146183718 -96480635 + AluJo SINE Alu 1 302 -10 232 205 99 124 chr1 146183718 146183778 -96480575 - MIR SINE MIR -152 110 50 2338 24 0 0 chr1 146183783 146184038 -96480315 - AluY SINE Alu -8 303 49 191 253 133 0 chr1 146184604 146184687 -96479666 - L2 LINE L2 -1 3312 3219 1589 136 85 41 chr1 146184735 146185029 -96479324 + AluJb SINE Alu 1 307 -5 645 306 134 12 chr1 146185109 146185689 -96478664 - L2 LINE L2 -218 3054 2326 441 339 42 0 chr1 146185699 146185864 -96478489 - MIR SINE MIR -73 189 18 428 243 62 49 chr1 146186293 146186437 -96477916 - L2 LINE L2 -6 3266 3121 223 239 145 34 chr1 146186518 146186635 -96477718 + MER5A DNA MER1_type 7 136 -53 203 235 27 20 chr1 146187138 146187287 -96477066 + (TATG)n Simple_repeat Simple_repeat 3 152 0 353 269 92 7 chr1 146187401 146187542 -96476811 + MIR SINE MIR 100 252 -10 532 251 66 27 chr1 146187739 146187922 -96476431 - Charlie8 DNA MER1_type -2111 306 117 2909 258 111 25 chr1 146188057 146189187 -96475166 + L1MC4 LINE L1 6815 8041 -1 198 293 0 13 chr1 146189218 146189293 -96475060 - L2 LINE L2 -218 3054 2981 744 257 47 0 chr1 146191530 146191744 -96472609 - L1MC4a LINE L1 -1913 5895 5672 2151 147 6 9 chr1 146192890 146193209 -96471144 + 7SLRNA srpRNA srpRNA 1 318 -2 2407 93 0 0 chr1 146193216 146193507 -96470846 + AluSx SINE Alu 1 291 -21 491 269 118 14 chr1 146193581 146193793 -96470560 - MIR SINE MIR -16 246 13 2432 77 3 3 chr1 146195418 146195729 -96468624 + AluY SINE Alu 1 311 0 253 229 16 0 chr1 146196354 146196415 -96467938 + (TG)n Simple_repeat Simple_repeat 2 63 0 348 361 17 17 chr1 146196523 146196703 -96467650 + MER5A DNA MER1_type 10 189 0 384 143 0 0 chr1 146197201 146197264 -96467089 + Alu SINE Alu 236 298 -4 1555 155 10 49 chr1 146197400 146197704 -96466649 + AluJo SINE Alu 1 292 -20 193 263 0 35 chr1 146198551 146198608 -96465745 - MIR SINE MIR -110 152 98 2397 63 3 0 chr1 146199079 146199381 -96464972 + AluY SINE Alu 1 303 -8 2049 136 0 3 chr1 146201029 146201338 -96463015 + AluJb SINE Alu 1 308 -4 238 340 28 19 chr1 146202230 146202336 -96462017 - L2 LINE L2 -25 3288 3182 4570 173 22 47 chr1 146202731 146204202 -96460151 + L1MB7 LINE L1 4755 6184 0 1911 164 7 0 chr1 146204326 146204636 -96459717 + AluJo SINE Alu 1 312 0 653 359 88 26 chr1 146204790 146205280 -96459073 - L2 LINE L2 -670 2644 2125 711 165 23 23 chr1 146205466 146205599 -96458754 + FLAM_C SINE Alu 1 133 0 580 287 70 15 chr1 146206155 146206363 -96457990 - MIR SINE MIR -2 260 38 251 211 42 0 chr1 146207697 146207768 -96456585 + MER103 DNA DNA 4 77 -89 469 333 14 7 chr1 146207774 146207921 -96456432 + MIR SINE MIR 6 153 -109 498 286 99 11 chr1 146208006 146208202 -96456151 + MIR SINE MIR 14 219 -43 235 372 23 31 chr1 146208250 146208379 -96455974 - L3b LINE CR1 -94 1489 1362 201 219 47 47 chr1 146208947 146209011 -96455342 + L2 LINE L2 3209 3272 0 772 294 18 9 chr1 146210228 146210456 -96453897 + MIR SINE MIR 12 241 -21 280 336 86 0 chr1 146211223 146211351 -96453002 + L3 LINE CR1 1305 1443 -134 330 212 92 54 chr1 146211421 146211605 -96452748 + MER113 DNA MER1_type? 63 253 -268 788 239 124 18 chr1 146211860 146212078 -96452275 + MER113 DNA MER1_type? 239 479 -42 721 236 72 30 chr1 146212167 146212404 -96451949 - MER112 DNA MER1_type -12 248 2 208 208 21 21 chr1 146212705 146212753 -96451600 + L2 LINE L2 3264 3311 -2 292 157 78 0 chr1 146212971 146213022 -96451331 + MER57A LTR ERV1 289 343 -60 250 300 0 38 chr1 146213267 146213347 -96451006 - MIR3 SINE MIR -130 78 2 283 331 41 16 chr1 146213969 146214090 -96450263 + MIR3 SINE MIR 85 208 0 2536 55 0 3 chr1 146215786 146216098 -96448255 - AluY SINE Alu 0 311 1 1018 198 0 16 chr1 146216700 146216892 -96447461 - MER20 DNA MER1_type -30 189 1 182 263 222 30 chr1 146217339 146217438 -96446915 - MIR3 SINE MIR -77 131 14 273 218 297 0 chr1 146218520 146218621 -96445732 + MIR3 SINE MIR 30 160 -48 202 243 0 0 chr1 146220558 146220595 -96443758 + MIR SINE MIR 72 108 -100 229 250 0 21 chr1 146220695 146220743 -96443610 - L2 LINE L2 -8 3264 3218 1918 141 7 0 chr1 146222280 146222577 -96441776 + AluSx SINE Alu 1 299 -13 2167 119 0 0 chr1 146224271 146224583 -96439770 - AluSx SINE Alu 0 312 1 1619 179 21 0 chr1 146225217 146225507 -96438846 - AluJo SINE Alu -4 308 13 627 246 47 37 chr1 146226691 146226882 -96437471 - MIR3 SINE MIR -10 198 6 186 43 0 0 chr1 146227993 146228016 -96436337 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1649 155 10 30 chr1 146228022 146228326 -96436027 - AluJo SINE Alu -14 298 1 369 271 21 10 chr1 146231562 146231658 -96432695 + MIR SINE MIR 57 153 -109 315 271 29 0 chr1 146232009 146232079 -96432274 + L2 LINE L2 3197 3268 -4 727 226 48 32 chr1 146233247 146233433 -96430920 + MER5A DNA MER1_type 1 189 0 1460 304 116 45 chr1 146233496 146234878 -96429475 + L2 LINE L2 1748 3221 -51 1759 55 5 0 chr1 146236268 146236488 -96427865 - AluSp SINE Alu -9 304 84 355 245 0 64 chr1 146236626 146236720 -96427633 + L1MC4 LINE L1 6616 6703 -1339 * 359 240 0 62 chr1 146236702 146236798 -96427555 + L1MC4 LINE L1 6614 6703 -1339 349 311 0 0 chr1 146236832 146236922 -96427431 + L1MC4 LINE L1 6614 6703 -1339 392 284 23 0 chr1 146236928 146237016 -96427337 + L1MC4 LINE L1 6614 6703 -1339 2267 103 0 0 chr1 146237107 146237419 -96426934 - AluSx SINE Alu 0 312 1 257 310 11 23 chr1 146238553 146238640 -96425713 - MIR3 SINE MIR -11 197 112 228 340 138 40 chr1 146238644 146239100 -96425253 + L2 LINE L2 494 994 -2320 351 354 180 3 chr1 146239518 146239834 -96424519 + L2 LINE L2 1614 1985 -1329 181 289 0 0 chr1 146241490 146241528 -96422825 + MIR SINE MIR 114 151 -111 351 245 116 54 chr1 146243278 146243425 -96420928 + L2 LINE L2 3134 3289 -24 306 0 0 0 chr1 146243430 146243464 -96420889 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 211 236 167 14 chr1 146244444 146244516 -96419837 + MIR SINE MIR 106 188 -74 2114 115 0 0 chr1 146244552 146244847 -96419506 + AluSx SINE Alu 1 295 -17 746 280 111 26 chr1 146247050 146247393 -96416960 + L2 LINE L2 2942 3313 0 304 346 0 10 chr1 146248522 146248623 -96415730 + MIR SINE MIR 27 126 -136 251 275 28 28 chr1 146249267 146249376 -96414977 + CT-rich Low_complexity Low_complexity 6 114 0 261 0 0 0 chr1 146251385 146251414 -96412939 + (TA)n Simple_repeat Simple_repeat 1 29 0 786 147 0 37 chr1 146251414 146251550 -96412803 - FLAM_A SINE Alu 0 142 12 295 73 36 0 chr1 146252920 146252975 -96411378 + (TA)n Simple_repeat Simple_repeat 1 57 0 319 281 12 12 chr1 146253297 146253379 -96410974 - L1MCa LINE L1 -4350 2076 1995 * 332 291 22 0 chr1 146253311 146253400 -96410953 + L1MC3 LINE L1 6571 6646 -1139 198 0 0 0 chr1 146256051 146256073 -96408280 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 317 291 111 0 chr1 146256073 146256190 -96408163 - L2 LINE L2 -13 3300 3171 252 260 39 13 chr1 146256299 146256376 -96407977 - L2 LINE L2 -290 2982 2904 2137 126 7 0 chr1 146257519 146257829 -96406524 + AluSx SINE Alu 1 312 0 446 60 83 0 chr1 146257832 146257916 -96406437 + GA-rich Low_complexity Low_complexity 2 92 0 594 205 86 0 chr1 146258901 146259052 -96405301 - MIR SINE MIR 0 262 99 2018 143 3 10 chr1 146259055 146259369 -96404984 + AluSx SINE Alu 1 312 0 363 136 0 0 chr1 146259376 146259435 -96404918 + (GGA)n Simple_repeat Simple_repeat 3 61 0 1169 101 6 0 chr1 146259435 146259614 -96404739 + (GAA)n Simple_repeat Simple_repeat 1 180 0 380 291 24 16 chr1 146259627 146259754 -96404599 - MIR SINE MIR -133 129 2 369 200 0 13 chr1 146260970 146261056 -96403297 + MLT1F LTR MaLR 3 86 -466 2157 111 0 3 chr1 146261083 146261380 -96402973 + AluSx SINE Alu 1 296 -16 835 230 72 4 chr1 146261408 146261799 -96402554 + MLT1F LTR MaLR 96 542 0 219 143 65 78 chr1 146262106 146262183 -96402170 - L2 LINE L2 -58 3255 3180 224 283 48 122 chr1 146262269 146262605 -96401748 + L2 LINE L2 2876 3186 -86 210 274 16 0 chr1 146264504 146264566 -96399787 - MIR SINE MIR -14 248 186 814 238 27 5 chr1 146265104 146265289 -96399064 - MER5A DNA MER1_type 0 189 1 616 298 147 52 chr1 146265613 146266191 -96398162 + L2 LINE L2 2056 2688 -626 462 18 0 0 chr1 146266191 146266246 -96398107 + (TG)n Simple_repeat Simple_repeat 2 56 0 238 148 111 0 chr1 146266499 146266553 -96397800 + MLT1K LTR MaLR 517 576 -12 335 299 134 8 chr1 146266572 146266699 -96397654 + L2 LINE L2 3171 3313 0 12661 94 25 97 chr1 146268032 146268205 -96396148 - Tigger1 DNA MER2_type -1 2417 2233 2259 107 0 0 chr1 146268205 146268505 -96395848 - AluSx SINE Alu -12 300 1 12661 94 25 97 chr1 146268505 146269561 -96394792 - Tigger1 DNA MER2_type -185 2233 1102 2069 126 0 13 chr1 146269561 146269871 -96394482 - AluSx SINE Alu -4 308 3 907 140 0 79 chr1 146269873 146269961 -96394392 - AluJo/FRAM SINE Alu -8 304 235 2230 112 0 3 chr1 146269961 146270266 -96394087 - AluY SINE Alu -7 304 1 907 140 0 79 chr1 146270266 146270355 -96393998 - AluJo/FRAM SINE Alu -77 235 141 12661 94 25 97 chr1 146270355 146270891 -96393462 - Tigger1 DNA MER2_type -1317 1101 694 2134 96 10 3 chr1 146270891 146271182 -96393171 - AluSg SINE Alu -17 293 1 12661 94 25 97 chr1 146271182 146271772 -96392581 - Tigger1 DNA MER2_type -1724 694 63 366 332 118 54 chr1 146272111 146272724 -96391629 - L2 LINE L2 0 3272 2617 195 299 124 10 chr1 146273614 146273711 -96390642 - MIR SINE MIR -62 200 93 536 270 20 0 chr1 146275827 146275975 -96388378 + L2 LINE L2 2199 2349 -965 240 231 64 0 chr1 146276028 146276106 -96388247 + MLT1J LTR MaLR 416 498 -13 28 0 0 0 chr1 146276315 146276343 -96388010 + AT_rich Low_complexity Low_complexity 1 28 0 1136 103 0 30 chr1 146276355 146276367 -96387986 + (GAAA)n Simple_repeat Simple_repeat 2 13 -246 2023 121 6 43 chr1 146276367 146276690 -96387663 + AluSx SINE Alu 1 311 -1 1136 103 0 30 chr1 146276690 146276943 -96387410 + (GAAA)n Simple_repeat Simple_repeat 13 259 0 443 265 0 29 chr1 146277021 146277123 -96387230 + L2 LINE L2 3206 3304 -9 193 333 28 14 chr1 146278399 146278471 -96385882 + MIR3 SINE MIR 87 159 -49 197 309 24 24 chr1 146278702 146278786 -96385567 - L2 LINE L2 -239 3033 2950 416 306 43 7 chr1 146280824 146280984 -96383369 - MIR SINE MIR -59 203 43 253 252 38 8 chr1 146282130 146282261 -96382092 + (CAGAGA)n Simple_repeat Simple_repeat 2 136 0 581 128 0 23 chr1 146282782 146282868 -96381485 + FRAM SINE Alu 76 159 -17 191 283 187 40 chr1 146284158 146284533 -96379820 + L2 LINE L2 2830 3259 -13 729 268 30 43 chr1 146284534 146284769 -96379584 + L3 LINE CR1 1308 1539 -38 982 228 30 0 chr1 146284774 146284976 -96379377 - MER63A DNA MER1_type 0 210 3 686 260 87 0 chr1 146287329 146287525 -96376828 - MIR SINE MIR -12 250 38 517 274 59 7 chr1 146288186 146288321 -96376032 + MIR SINE MIR 117 258 -4 343 273 16 55 chr1 146288734 146288862 -96375491 + MIR3 SINE MIR 54 176 -32 370 368 8 15 chr1 146289118 146289251 -96375102 + MER91A DNA MER1_type 2 133 -63 180 163 0 0 chr1 146289268 146289311 -96375042 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 228 371 53 30 chr1 146289772 146289904 -96374449 - MIR SINE MIR -77 185 51 447 229 55 101 chr1 146290654 146290872 -96373481 + L2 LINE L2 3064 3271 -1 228 371 53 30 chr1 146291472 146291604 -96372749 - MIR SINE MIR -77 185 51 527 327 43 0 chr1 146291711 146291873 -96372480 - MIR SINE MIR -71 191 23 1621 187 3 3 chr1 146291875 146292174 -96372179 - AluJo SINE Alu -11 301 3 218 196 71 0 chr1 146292333 146292445 -96371908 + (TCTCTG)n Simple_repeat Simple_repeat 2 121 0 733 267 44 5 chr1 146293546 146293752 -96370601 - MIR SINE MIR -29 233 20 269 243 83 0 chr1 146294514 146294621 -96369732 + MIR SINE MIR 41 154 -54 1941 139 3 19 chr1 146294780 146294916 -96369437 + AluJb SINE Alu 1 138 -174 2139 82 10 13 chr1 146294916 146295221 -96369132 + AluSx SINE Alu 1 304 -8 1941 139 3 19 chr1 146295221 146295401 -96368952 + AluJb SINE Alu 138 312 0 191 306 16 0 chr1 146295697 146295759 -96368594 - MIR SINE MIR -97 165 103 880 85 108 0 chr1 146295795 146295925 -96368428 - AluSg/x SINE Alu -26 284 141 1679 143 18 61 chr1 146296063 146296392 -96367961 - L1MB4 LINE L1 0 6180 5866 1051 240 71 92 chr1 146296396 146296569 -96367784 - L1ME1 LINE L1 -56 6110 5935 2279 96 20 0 chr1 146296569 146296872 -96367481 + AluSg SINE Alu 1 309 -1 1051 240 71 92 chr1 146296872 146297206 -96367147 - L1ME1 LINE L1 -231 5935 5614 298 378 0 0 chr1 146297493 146297591 -96366762 - MIR3 SINE MIR -2 206 109 283 355 102 30 chr1 146297611 146297777 -96366576 + L2 LINE L2 3075 3252 -20 1165 252 104 60 chr1 146298194 146298938 -96365415 - L2 LINE L2 -2 3311 2547 306 0 0 0 chr1 146299456 146299490 -96364863 + (TG)n Simple_repeat Simple_repeat 2 35 0 335 143 0 29 chr1 146300364 146300434 -96363919 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 197 132 26 0 chr1 146300544 146300582 -96363771 + GA-rich Low_complexity Low_complexity 3 41 0 297 155 0 0 chr1 146301151 146301209 -96363144 + CT-rich Low_complexity Low_complexity 2 59 0 225 0 0 0 chr1 146301215 146301240 -96363113 + (CA)n Simple_repeat Simple_repeat 1 25 0 219 235 0 20 chr1 146302204 146302255 -96362098 + GA-rich Low_complexity Low_complexity 2 51 0 863 261 14 9 chr1 146302259 146302474 -96361879 - MIR SINE MIR -14 248 33 204 228 0 0 chr1 146303855 146303912 -96360441 + (TG)n Simple_repeat Simple_repeat 2 58 0 246 184 27 34 chr1 146304598 146304745 -96359608 + (TCTCTG)n Simple_repeat Simple_repeat 1 146 0 243 355 112 6 chr1 146306381 146306550 -96357803 + MIR3 SINE MIR 5 191 -17 2123 77 4 4 chr1 146307926 146308231 -96356122 + AluSc SINE Alu 7 311 0 246 307 181 34 chr1 146308919 146309212 -96355141 + L2 LINE L2 2227 2562 -752 228 262 172 96 chr1 146309333 146309665 -96354688 - L2 LINE L2 -2 3270 2914 287 255 75 0 chr1 146310127 146310221 -96354132 - MIR SINE MIR -112 150 50 392 250 161 8 chr1 146310308 146310432 -96353921 + MIR SINE MIR 6 148 -114 1010 172 0 18 chr1 146310642 146310811 -96353542 + FRAM SINE Alu 1 166 0 29 0 0 0 chr1 146310818 146310847 -96353506 + AT_rich Low_complexity Low_complexity 1 29 0 201 289 0 0 chr1 146310852 146310897 -96353456 + L2 LINE L2 3216 3260 -12 445 304 9 0 chr1 146311876 146311988 -96352365 + MER91A DNA MER1_type 26 138 -58 324 0 0 0 chr1 146312143 146312179 -96352174 + (CA)n Simple_repeat Simple_repeat 2 37 0 878 154 21 0 chr1 146314669 146314812 -96349541 + FRAM SINE Alu 1 146 -30 378 0 0 0 chr1 146314817 146314859 -96349494 + (CA)n Simple_repeat Simple_repeat 2 43 0 2410 57 0 7 chr1 146314901 146315202 -96349151 + AluY SINE Alu 1 299 -12 649 226 13 28 chr1 146315235 146315478 -96348875 + L1ME3A LINE L1 5716 5966 -204 23 33 0 0 chr1 146315620 146315650 -96348703 + AT_rich Low_complexity Low_complexity 1 30 0 833 125 21 28 chr1 146316461 146316605 -96347748 - FLAM_C SINE Alu 0 143 1 824 153 0 0 chr1 146317486 146317610 -96346743 - FLAM_C SINE Alu -7 126 3 396 311 12 48 chr1 146318179 146318346 -96346007 - MIR3 SINE MIR -5 203 43 203 278 0 157 chr1 146318461 146318501 -96345852 + MIR3 SINE MIR 109 154 -54 2156 74 0 28 chr1 146318501 146318785 -96345568 + AluSg SINE Alu 2 277 -33 654 13 0 0 chr1 146318787 146318862 -96345491 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 203 278 0 157 chr1 146318862 146318933 -96345420 + MIR3 SINE MIR 155 205 -3 2137 65 0 18 chr1 146320041 146320319 -96344034 + AluY SINE Alu 39 311 0 889 124 8 0 chr1 146320344 146320473 -96343880 + AluJo SINE Alu 2 131 -171 205 333 129 6 chr1 146321566 146321737 -96342616 - MIR3 SINE MIR -14 194 3 607 297 15 25 chr1 146321816 146322018 -96342335 + MIR SINE MIR 10 209 -53 316 172 0 3 chr1 146322317 146322390 -96341963 + FAM SINE Alu 115 179 0 1606 123 67 21 chr1 146322434 146322719 -96341634 + MER1B DNA MER1_type 42 339 0 238 344 19 25 chr1 146323700 146323860 -96340493 + (CATA)n Simple_repeat Simple_repeat 2 160 0 * 348 372 6 0 chr1 146323750 146323922 -96340431 + (CA)n Simple_repeat Simple_repeat 1 173 0 300 70 0 0 chr1 146324276 146324319 -96340034 + (CA)n Simple_repeat Simple_repeat 2 44 0 189 74 0 0 chr1 146324544 146324571 -96339782 + (GA)n Simple_repeat Simple_repeat 2 28 0 353 302 0 25 chr1 146324608 146324767 -96339586 + GA-rich Low_complexity Low_complexity 2 156 0 22 0 0 0 chr1 146327168 146327190 -96337163 + GC_rich Low_complexity Low_complexity 1 22 0 198 103 0 0 chr1 146327850 146327879 -96336474 + (CAGGG)n Simple_repeat Simple_repeat 3 31 0 268 230 44 37 chr1 146329078 146329213 -96335140 + (TCTCTG)n Simple_repeat Simple_repeat 6 141 0 507 33 0 0 chr1 146330757 146330818 -96333535 + (CA)n Simple_repeat Simple_repeat 2 62 0 416 231 43 26 chr1 146331667 146331784 -96332569 - L2 LINE L2 0 3272 3154 28 71 0 0 chr1 146331788 146331844 -96332509 + AT_rich Low_complexity Low_complexity 1 56 0 763 226 12 24 chr1 146331853 146332021 -96332332 + AluJo SINE Alu 121 286 -26 240 86 0 0 chr1 146332027 146332062 -96332291 + (CA)n Simple_repeat Simple_repeat 2 36 0 297 304 0 34 chr1 146332129 146332277 -96332076 - FRAM SINE Alu 0 166 24 345 47 0 0 chr1 146332542 146332585 -96331768 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1336 269 102 43 chr1 146332585 146333253 -96331100 - L2 LINE L2 -248 3065 2348 207 214 337 20 chr1 146334117 146334215 -96330138 - MIR SINE MIR -74 188 60 631 222 258 0 chr1 146334304 146334498 -96329855 + MIR SINE MIR 2 245 -17 208 278 0 52 chr1 146334658 146334755 -96329598 + GA-rich Low_complexity Low_complexity 4 95 0 714 271 119 9 chr1 146336529 146336747 -96327606 + MIR SINE MIR 8 249 -13 205 289 0 0 chr1 146336811 146336856 -96327497 + MIR SINE MIR 36 80 -182 2165 112 0 28 chr1 146336905 146337226 -96327127 + AluSx SINE Alu 1 312 0 1957 141 0 3 chr1 146337249 146337553 -96326800 + AluSx SINE Alu 1 303 -9 1856 151 35 0 chr1 146337560 146337845 -96326508 + AluJb SINE Alu 1 295 -17 228 178 67 0 chr1 146337975 146338020 -96326333 + L2 LINE L2 3202 3249 -23 244 284 95 0 chr1 146338063 146338137 -96326216 - MIR SINE MIR -117 145 65 22 35 0 0 chr1 146338847 146338876 -96325477 + GC_rich Low_complexity Low_complexity 1 29 0 277 273 0 13 chr1 146339467 146339544 -96324809 + L3 LINE CR1 861 936 -641 720 244 6 6 chr1 146339650 146339806 -96324547 - MER5A DNA MER1_type -33 156 1 276 236 100 45 chr1 146339806 146339882 -96324471 + MER91C DNA MER1_type 56 137 -3 673 173 9 0 chr1 146343744 146343854 -96320499 - MER81 DNA DNA 0 114 4 301 340 34 0 chr1 146344823 146344970 -96319383 + (TTAGGG)n Simple_repeat Simple_repeat 3 154 0 296 262 12 0 chr1 146345087 146345171 -96319182 + (TTAGGG)n Simple_repeat Simple_repeat 3 87 0 396 317 82 27 chr1 146345687 146345870 -96318483 + MIR3 SINE MIR 16 208 0 203 273 36 0 chr1 146347596 146347651 -96316702 + C-rich Low_complexity Low_complexity 3 59 0 374 236 212 15 chr1 146352045 146352304 -96312049 + L1ME4a LINE L1 5811 6120 -1 295 146 73 0 chr1 146353020 146353075 -96311278 - Alu SINE Alu -1 301 243 242 204 0 0 chr1 146353180 146353224 -96311129 - MIR SINE MIR -94 114 71 716 218 144 19 chr1 146353644 146353915 -96310438 - LTR50 LTR ERVL -7 788 484 629 159 209 37 chr1 146353934 146354097 -96310256 - LTR50 LTR ERVL -585 210 20 554 259 35 52 chr1 146354134 146354185 -96310168 - MIR SINE MIR -4 258 208 2475 83 0 3 chr1 146354185 146354487 -96309866 - AluSx SINE Alu -11 301 1 554 259 35 52 chr1 146354487 146354689 -96309664 - MIR SINE MIR -54 208 5 239 382 46 7 chr1 146354775 146354927 -96309426 - L2 LINE L2 -11 3261 3104 196 286 0 0 chr1 146354996 146355045 -96309308 + L2 LINE L2 2709 2757 -557 182 388 0 0 chr1 146355437 146355522 -96308831 + L2 LINE L2 3186 3270 -2 2419 98 7 0 chr1 146356908 146357214 -96307139 + AluSx SINE Alu 2 309 -3 240 308 66 0 chr1 146357215 146357306 -96307047 - MIR SINE MIR -81 181 85 2295 97 7 10 chr1 146357809 146358119 -96306234 + AluSx SINE Alu 1 309 -3 347 305 181 31 chr1 146358469 146358790 -96305563 + L2 LINE L2 2939 3307 -6 342 265 41 49 chr1 146358947 146359092 -96305261 - MIR SINE MIR -63 145 7 237 307 27 0 chr1 146359365 146359440 -96304913 - L2 LINE L2 -10 3303 3227 871 129 0 8 chr1 146359652 146359784 -96304569 + FLAM_C SINE Alu 1 131 -2 1729 190 7 16 chr1 146360068 146360203 -96304150 + AluJo SINE Alu 1 136 -176 2297 115 3 3 chr1 146360203 146360515 -96303838 + AluSx SINE Alu 1 312 0 1729 190 7 16 chr1 146360515 146360689 -96303664 + AluJo SINE Alu 136 307 -5 2390 61 41 3 chr1 146361176 146361471 -96302882 + AluY SINE Alu 1 306 -5 242 210 0 32 chr1 146361471 146361533 -96302820 + FLAM SINE Alu 75 129 -4 843 251 50 14 chr1 146361733 146361952 -96302401 + MIR SINE MIR 12 238 -24 190 241 86 17 chr1 146362035 146362093 -96302260 + MIR SINE MIR 82 143 -119 2378 299 78 87 chr1 146362389 146362576 -96301777 + ERVL LTR ERVL 2950 3137 -2627 2408 75 7 0 chr1 146362576 146362869 -96301484 + AluSp SINE Alu 1 295 -18 2378 299 78 87 chr1 146362869 146363716 -96300637 + ERVL LTR ERVL 3137 3990 -1774 265 176 235 0 chr1 146363716 146363784 -96300569 - MER96 DNA MER1_type? -91 84 1 2378 299 78 87 chr1 146363784 146365133 -96299220 + ERVL LTR ERVL 3990 5380 -384 180 0 0 0 chr1 146365135 146365155 -96299198 + (T)n Simple_repeat Simple_repeat 1 20 0 1304 192 0 17 chr1 146365189 146365429 -96298924 - AluJo SINE Alu -16 296 61 199 297 144 8 chr1 146366166 146366264 -96298089 + L2 LINE L2 2946 3064 -208 402 21 0 0 chr1 146366264 146366311 -96298042 + (CA)n Simple_repeat Simple_repeat 2 48 0 199 297 144 8 chr1 146366311 146366330 -96298023 + L2 LINE L2 3064 3079 -193 5060 170 13 47 chr1 146366398 146366672 -96297681 + L1PB2 LINE L1 4125 4407 -1744 207 0 0 0 chr1 146366672 146366695 -96297658 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5060 170 13 47 chr1 146366695 146367218 -96297135 + L1PB2 LINE L1 4407 4947 -1204 2193 137 0 0 chr1 146367218 146367518 -96296835 + AluJb SINE Alu 1 300 -12 5060 170 13 47 chr1 146367518 146367946 -96296407 + L1PB2 LINE L1 4947 5298 -853 2274 105 6 13 chr1 146367946 146368261 -96296092 + AluSp SINE Alu 1 313 0 5060 170 13 47 chr1 146368261 146368457 -96295896 + L1PB2 LINE L1 5298 5499 -652 2152 98 0 18 chr1 146368462 146368747 -96295606 + AluSx SINE Alu 6 285 -27 192 40 0 0 chr1 146368752 146368777 -96295576 + (CA)n Simple_repeat Simple_repeat 2 26 0 4022 116 19 6 chr1 146368986 146369651 -96294702 + L1PB2 LINE L1 5470 6143 -8 200 273 18 0 chr1 146369752 146369807 -96294546 + L2 LINE L2 3224 3279 -34 2360 99 0 0 chr1 146370058 146370352 -96294001 + AluSx SINE Alu 7 300 -12 240 35 0 0 chr1 146370539 146370568 -96293785 + (TTA)n Simple_repeat Simple_repeat 2 30 0 725 154 0 8 chr1 146370575 146370692 -96293661 - FLAM_C SINE Alu -15 118 3 287 48 0 24 chr1 146370911 146370953 -96293400 + (GA)n Simple_repeat Simple_repeat 2 42 0 947 116 0 7 chr1 146374419 146374565 -96289788 - AluSg/x SINE Alu 0 310 166 345 186 12 47 chr1 146374751 146374837 -96289516 - AluYb8 SINE Alu -115 193 111 185 364 79 21 chr1 146374838 146374978 -96289375 - L2 LINE L2 -19 3253 3106 365 246 15 108 chr1 146375051 146375246 -96289107 - L2 LINE L2 -25 3288 3112 1488 255 225 22 chr1 146375365 146376375 -96287978 - L2 LINE L2 -222 3091 1875 364 307 192 24 chr1 146376520 146376937 -96287416 - L2 LINE L2 -473 2841 2355 2279 102 3 3 chr1 146377174 146377469 -96286884 + AluSx SINE Alu 1 295 -17 1891 162 3 14 chr1 146377656 146377953 -96286400 + AluJb SINE Alu 1 294 -18 810 147 93 0 chr1 146379848 146379977 -96284376 - FRAM SINE Alu -35 141 1 262 315 22 11 chr1 146379980 146380069 -96284284 + L2 LINE L2 2618 2707 -607 514 270 110 51 chr1 146380170 146380525 -96283828 + L2 LINE L2 2897 3272 0 200 244 0 0 chr1 146380912 146380957 -96283396 - L3b LINE CR1 -4 1579 1535 802 257 0 0 chr1 146380960 146381131 -96283222 + MER117 DNA MER1_type 1 171 -26 353 223 240 8 chr1 146381141 146381262 -96283091 - MIR3 SINE MIR -37 171 23 1435 153 116 40 chr1 146382313 146382466 -96281887 - AluJo SINE Alu -16 296 156 2225 111 0 13 chr1 146382466 146382764 -96281589 + AluSx SINE Alu 1 294 -18 1435 153 116 40 chr1 146382764 146382885 -96281468 - AluJo SINE Alu -156 156 1 208 233 0 0 chr1 146383313 146383356 -96280997 + GA-rich Low_complexity Low_complexity 4 46 0 192 290 48 0 chr1 146383754 146383816 -96280537 + MIR SINE MIR 36 100 -108 227 341 0 11 chr1 146383941 146384032 -96280321 - MIR3 SINE MIR -19 189 100 2152 80 83 7 chr1 146384805 146385093 -96279260 + AluSx SINE Alu 2 311 -1 181 343 14 0 chr1 146385751 146385821 -96278532 - MIR3 SINE MIR -8 200 130 190 331 83 25 chr1 146386754 146386875 -96277478 - L3 LINE CR1 -24 1553 1426 4184 139 54 17 chr1 146388577 146389135 -96275218 + Tigger2 DNA MER2_type 1 596 -2122 2347 60 53 3 chr1 146389135 146389420 -96274933 - AluSg SINE Alu -11 299 1 4184 139 54 17 chr1 146389420 146389623 -96274730 + Tigger2 DNA MER2_type 596 790 -1928 438 100 0 0 chr1 146389623 146389683 -96274670 + AluSc SINE Alu 233 292 -17 358 143 0 86 chr1 146389683 146389753 -96274600 + Tigger2 DNA MER2_type 793 856 -1862 * 419 136 193 0 chr1 146389746 146389834 -96274519 + Tigger2 DNA MER2_type 2553 2657 -61 1244 171 18 28 chr1 146389836 146390053 -96274300 + AluJo SINE Alu 87 301 -11 395 183 0 14 chr1 146390054 146390125 -96274228 + Tigger2 DNA MER2_type 2649 2718 0 186 256 12 70 chr1 146390948 146391034 -96273319 + L2 LINE L2 3143 3223 -49 1723 157 43 23 chr1 146392409 146392709 -96271644 + AluJb SINE Alu 1 306 -6 303 175 0 0 chr1 146392730 146392787 -96271566 + GA-rich Low_complexity Low_complexity 1 57 0 298 111 19 0 chr1 146393621 146393675 -96270678 + L1PB4 LINE L1 6089 6143 -13 2348 113 3 0 chr1 146393738 146394048 -96270305 + AluSp SINE Alu 1 311 -2 1021 162 12 12 chr1 146394068 146394235 -96270118 + AluJo SINE Alu 1 167 -145 1236 238 30 107 chr1 146395109 146395240 -96269113 + MLT1J LTR MaLR 12 152 -359 2217 120 3 22 chr1 146395240 146395556 -96268797 + AluSx SINE Alu 1 310 -2 1236 238 30 107 chr1 146395556 146395795 -96268558 + MLT1J LTR MaLR 152 329 -182 742 150 8 15 chr1 146395795 146395928 -96268425 + FLAM_C SINE Alu 2 133 0 1236 238 30 107 chr1 146395928 146396098 -96268255 + MLT1J LTR MaLR 329 511 0 2366 89 3 0 chr1 146397362 146397654 -96266699 - AluSq SINE Alu -20 293 1 379 265 127 57 chr1 146397848 146398131 -96266222 - L3 LINE CR1 -7 1570 1268 449 244 128 19 chr1 146398156 146398312 -96266041 - MIR SINE MIR -4 258 86 25 0 0 0 chr1 146398350 146398375 -96265978 + AT_rich Low_complexity Low_complexity 1 25 0 965 242 20 39 chr1 146398639 146398725 -96265628 + L1MD3 LINE L1 5047 5133 -1013 2175 106 0 0 chr1 146398725 146399027 -96265326 + AluSx SINE Alu 1 302 -10 2079 105 3 13 chr1 146399029 146399335 -96265018 + AluSx SINE Alu 1 303 -9 3598 105 42 4 chr1 146399335 146399857 -96264496 + L1PA15 LINE L1 5495 6036 -129 1847 157 3 13 chr1 146399860 146400172 -96264181 + AluSx SINE Alu 1 309 -3 1141 105 0 35 chr1 146400172 146400344 -96264009 + AluSg/x SINE Alu 134 299 -13 940 97 14 14 chr1 146400347 146400491 -96263862 + L1PA15 LINE L1 6022 6165 0 432 0 0 0 chr1 146400496 146400544 -96263809 + (TA)n Simple_repeat Simple_repeat 2 49 0 2163 105 0 3 chr1 146401884 146402179 -96262174 + AluSg SINE Alu 1 294 -16 2120 88 3 14 chr1 146402471 146402765 -96261588 - AluSg1 SINE Alu -18 291 1 2356 67 0 16 chr1 146403748 146404060 -96260293 + AluY SINE Alu 1 307 -4 270 73 0 0 chr1 146404186 146404227 -96260126 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 2055 105 14 0 chr1 146404233 146404528 -96259825 - AluSx SINE Alu -12 300 2 871 205 84 84 chr1 146404752 146404790 -96259563 + MIR SINE MIR 8 45 -217 2225 68 7 3 chr1 146404790 146405082 -96259271 + AluSp SINE Alu 1 293 -20 871 205 84 84 chr1 146405082 146405292 -96259061 + MIR SINE MIR 44 256 -6 209 347 93 45 chr1 146405796 146406087 -96258266 - L3b LINE CR1 -30 1553 1249 215 357 36 0 chr1 146406551 146406635 -96257718 + MIR3 SINE MIR 111 197 -11 1936 129 23 3 chr1 146406967 146407270 -96257083 + AluSx SINE Alu 1 309 -3 268 170 0 0 chr1 146407315 146407362 -96256991 + L1MA7 LINE L1 5552 5598 -702 1010 176 27 0 chr1 146407365 146407552 -96256801 + AluJb SINE Alu 121 312 0 257 162 29 15 chr1 146407555 146407623 -96256730 + A-rich Low_complexity Low_complexity 3 71 0 2114 107 0 7 chr1 146407641 146407949 -96256404 + AluSx SINE Alu 6 311 -1 967 115 95 0 chr1 146407950 146408098 -96256255 + AluSg/x SINE Alu 132 293 -17 649 146 0 126 chr1 146408100 146408251 -96256102 + AluJ SINE Alu 1 132 -170 22 0 0 0 chr1 146408304 146408326 -96256027 + AT_rich Low_complexity Low_complexity 1 22 0 1793 115 11 29 chr1 146408335 146408614 -96255739 + AluSx SINE Alu 10 283 -29 40 21 0 0 chr1 146408620 146408667 -96255686 + AT_rich Low_complexity Low_complexity 1 47 0 949 180 0 12 chr1 146408667 146408839 -96255514 + AluJ SINE Alu 129 298 -14 234 0 0 0 chr1 146408868 146408894 -96255459 + (TA)n Simple_repeat Simple_repeat 2 27 0 2198 82 3 3 chr1 146408899 146409190 -96255163 + AluSq SINE Alu 1 291 -22 1501 137 0 0 chr1 146409201 146409420 -96254933 + AluJb SINE Alu 86 304 -8 3356 136 67 28 chr1 146409421 146410075 -96254278 + L1MA7 LINE L1 5612 6291 0 512 262 262 0 chr1 146410543 146410730 -96253623 - MIR SINE MIR -7 255 20 276 320 68 10 chr1 146410800 146410903 -96253450 + MIR SINE MIR 16 124 -84 180 182 0 23 chr1 146411320 146411364 -96252989 + L2 LINE L2 1667 1709 -1605 1590 148 0 58 chr1 146411617 146411927 -96252426 - AluJo SINE Alu -20 292 1 1454 184 26 29 chr1 146412052 146412190 -96252163 + AluJo SINE Alu 1 138 -174 2370 64 0 0 chr1 146412190 146412486 -96251867 + AluSg SINE Alu 1 296 -14 1454 184 26 29 chr1 146412486 146412657 -96251696 + AluJo SINE Alu 138 309 -3 262 313 0 12 chr1 146412658 146412738 -96251615 + AluJb SINE Alu 49 127 -175 420 135 68 26 chr1 146412877 146412963 -96251390 - L1M2 LINE L1 -531 5643 5554 233 388 20 0 chr1 146413686 146413784 -96250569 + MIR SINE MIR 47 146 -62 1000 113 0 0 chr1 146414477 146414618 -96249735 + AluJb SINE Alu 1 141 -171 48 18 0 0 chr1 146414640 146414695 -96249658 + AT_rich Low_complexity Low_complexity 1 55 0 829 150 0 50 chr1 146414805 146414945 -96249408 + FLAM_C SINE Alu 1 133 0 369 304 99 12 chr1 146414978 146415221 -96249132 + L2 LINE L2 2339 2602 -712 2220 75 17 0 chr1 146465274 146465569 -96198784 + AluY SINE Alu 1 300 -11 311 248 15 45 chr1 146465833 146465877 -96198476 - L1M4 LINE L1 -3817 2329 2285 1682 147 37 27 chr1 146465877 146466177 -96198176 - AluSx SINE Alu -9 303 1 311 248 15 45 chr1 146466177 146466265 -96198088 - L1M4 LINE L1 -3861 2285 2201 201 272 0 44 chr1 146466277 146466391 -96197962 + T-rich Low_complexity Low_complexity 5 113 0 481 303 130 42 chr1 146466585 146467258 -96197095 - L1ME3A LINE L1 -283 5887 5275 2320 81 0 0 chr1 146467258 146467553 -96196800 + AluSc SINE Alu 1 295 -14 481 303 130 42 chr1 146467553 146467808 -96196545 - L1ME3A LINE L1 -895 5275 5044 207 0 0 0 chr1 146467808 146467831 -96196522 + (TG)n Simple_repeat Simple_repeat 1 23 0 481 303 130 42 chr1 146467831 146468101 -96196252 - L1ME3A LINE L1 -1126 5044 4566 1511 233 180 32 chr1 146468101 146468628 -96195725 + ERVL LTR ERVL 2364 2968 -2796 1000 186 25 15 chr1 146468621 146468825 -96195528 + ERVL LTR ERVL 3285 3490 -2274 * 216 0 0 0 chr1 146469460 146469484 -96194869 + (A)n Simple_repeat Simple_repeat 1 24 0 1298 326 58 0 chr1 146470868 146471279 -96193074 + LTR16A LTR ERVL 16 450 0 1592 170 10 13 chr1 146472148 146472454 -96191899 - AluSx SINE Alu -7 305 1 546 190 40 0 chr1 146472808 146472908 -96191445 + AluJb SINE Alu 188 291 -21 1938 226 70 81 chr1 146472929 146473598 -96190755 - MLT2F LTR ERVL 0 663 2 275 294 76 43 chr1 146473653 146473837 -96190516 + MIR SINE MIR 12 201 -61 462 246 58 47 chr1 146474205 146474376 -96189977 - MER5B DNA MER1_type -3 175 3 722 163 42 70 chr1 146474515 146474644 -96189709 - MLT1B LTR MaLR 0 505 265 632 171 63 32 chr1 146474881 146475039 -96189314 + MER65A LTR ERV1 283 445 0 * 1936 116 0 11 chr1 146475039 146475307 -96189046 - MLT1B LTR MaLR -125 265 1 1024 152 35 66 chr1 146475701 146475957 -96188396 - L1MA9 LINE L1 -6 6306 6059 1990 210 0 6 chr1 146476726 146477092 -96187261 + MLT1A1 LTR MaLR 2 365 0 318 192 56 88 chr1 146477125 146477250 -96187103 - MIR SINE MIR -21 241 121 2727 7 0 0 chr1 146478062 146478366 -96185987 - AluY SINE Alu -7 304 1 193 279 0 0 chr1 146478891 146478934 -96185419 - MIR3 SINE MIR -16 192 150 344 312 0 0 chr1 146479149 146479242 -96185111 - MIR SINE MIR -60 148 56 421 239 64 28 chr1 146479297 146479406 -96184947 + L2 LINE L2 3150 3262 -10 731 294 39 16 chr1 146479436 146479691 -96184662 - MIR SINE MIR 0 262 2 295 200 57 0 chr1 146479703 146479773 -96184580 + L2 LINE L2 3235 3308 -5 2058 106 10 0 chr1 146480644 146480937 -96183416 + AluSx SINE Alu 1 296 -16 2274 75 10 0 chr1 146480937 146481245 -96183108 + AluY SINE Alu 1 311 0 248 279 90 25 chr1 146481462 146481587 -96182766 + MIR SINE MIR 9 130 -78 180 152 0 0 chr1 146481934 146481967 -96182386 + (TG)n Simple_repeat Simple_repeat 2 34 0 339 279 127 62 chr1 146482436 146482669 -96181684 - MIR SINE MIR -4 258 1 240 86 0 0 chr1 146483163 146483198 -96181155 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 567 235 70 78 chr1 146484047 146484161 -96180192 + MIR SINE MIR 22 135 -127 2046 110 13 0 chr1 146484161 146484460 -96179893 + AluSg SINE Alu 1 303 -7 567 235 70 78 chr1 146484460 146484588 -96179765 + MIR SINE MIR 135 262 0 683 212 15 8 chr1 146485336 146485468 -96178885 - FLAM_C SINE Alu 0 133 1 331 238 100 0 chr1 146485635 146485715 -96178638 + L2 LINE L2 3215 3302 -11 * 827 319 7 7 chr1 146485713 146485986 -96178367 + L3 LINE CR1 1303 1575 -2 216 182 0 0 chr1 146486984 146487028 -96177325 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 228 265 0 59 chr1 146487305 146487373 -96176980 + MIR SINE MIR 148 211 -51 309 278 128 65 chr1 146487403 146487848 -96176505 - L2 LINE L2 -177 3095 2625 360 296 96 0 chr1 146487886 146488011 -96176342 - L2 LINE L2 -3 3310 3174 195 343 43 0 chr1 146488538 146488608 -96175745 + MIR SINE MIR 41 113 -95 369 0 0 0 chr1 146489060 146489101 -96175252 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 303 82 8 chr1 146489314 146489436 -96174917 + MIR SINE MIR 113 243 -19 * 503 167 48 48 chr1 146489428 146489554 -96174799 - MIR SINE MIR -21 241 116 2244 61 0 48 chr1 146489639 146489952 -96174401 + AluY SINE Alu 1 298 -13 578 213 65 32 chr1 146490938 146491093 -96173260 + MIR SINE MIR 59 218 -44 280 382 9 9 chr1 146491110 146491220 -96173133 - L2 LINE L2 0 3272 3163 183 306 102 27 chr1 146491365 146491512 -96172841 + L3 LINE CR1 1021 1178 -399 1100 293 52 48 chr1 146491517 146491551 -96172802 - L2 LINE L2 -18 3295 3263 1640 123 41 0 chr1 146491551 146491826 -96172527 - AluSx SINE Alu 0 314 30 1100 293 52 48 chr1 146491826 146492248 -96172105 - L2 LINE L2 -50 3263 2836 1343 257 83 74 chr1 146492354 146493004 -96171349 - MER21B LTR ERV1 -186 677 22 2941 232 146 17 chr1 146493025 146494041 -96170312 - L2 LINE L2 -508 2806 1660 721 294 15 0 chr1 146494052 146494249 -96170104 + L3 LINE CR1 1183 1382 -195 765 257 5 35 chr1 146494612 146494814 -96169539 + MIR3 SINE MIR 6 201 -7 185 321 0 0 chr1 146494926 146494979 -96169374 - L3b LINE CR1 -198 1385 1333 403 297 101 91 chr1 146496081 146496379 -96167974 + L2 LINE L2 2804 3110 -162 2453 120 52 47 chr1 146496379 146496454 -96167899 - MSTB LTR MaLR 0 426 353 2140 72 0 24 chr1 146496454 146496747 -96167606 + AluY SINE Alu 5 290 -21 2453 120 52 47 chr1 146496747 146497095 -96167258 - MSTB LTR MaLR -73 353 1 403 297 101 91 chr1 146497095 146497260 -96167093 + L2 LINE L2 3110 3272 0 209 291 68 60 chr1 146497675 146497792 -96166561 + L2 LINE L2 3196 3313 0 244 254 79 0 chr1 146500162 146500225 -96164128 - L2 LINE L2 -1 3271 3204 334 218 197 84 chr1 146500902 146501044 -96163309 + MIR3 SINE MIR 41 198 -10 199 343 43 0 chr1 146502883 146502953 -96161400 - L2 LINE L2 -2 3270 3198 284 230 0 35 chr1 146503145 146503232 -96161121 + GA-rich Low_complexity Low_complexity 1 84 0 236 256 98 24 chr1 146503983 146504065 -96160288 + MIR SINE MIR 13 100 -162 900 222 84 13 chr1 146504082 146504307 -96160046 - MIR SINE MIR -14 248 8 4481 171 49 41 chr1 146504319 146505173 -96159180 - MER21B LTR ERV1 -2 861 1 183 250 0 0 chr1 146505234 146505274 -96159079 + L2 LINE L2 3263 3302 -11 380 306 52 8 chr1 146506433 146506567 -96157786 - MIR SINE MIR -71 191 52 270 0 0 0 chr1 146507037 146507067 -96157286 + (TG)n Simple_repeat Simple_repeat 1 30 0 241 237 51 0 chr1 146507067 146507126 -96157227 + (CATG)n Simple_repeat Simple_repeat 1 62 0 23 33 0 0 chr1 146507127 146507157 -96157196 + AT_rich Low_complexity Low_complexity 1 30 0 436 311 41 31 chr1 146507368 146507564 -96156789 + MIR SINE MIR 20 217 -45 26 30 0 0 chr1 146507578 146507611 -96156742 + AT_rich Low_complexity Low_complexity 1 33 0 348 263 78 28 chr1 146507709 146507865 -96156488 - MIR SINE MIR -64 144 41 429 222 94 58 chr1 146508186 146508357 -96155996 + MIR3 SINE MIR 21 197 -11 228 182 0 0 chr1 146509026 146509070 -96155283 + (CA)n Simple_repeat Simple_repeat 2 45 0 188 214 24 0 chr1 146509187 146509229 -96155124 + MIR SINE MIR 36 78 -130 1089 220 31 20 chr1 146509507 146509762 -96154591 + AluJb SINE Alu 7 264 -48 381 22 0 0 chr1 146509913 146509959 -96154394 + (CA)n Simple_repeat Simple_repeat 2 47 0 184 0 120 0 chr1 146510878 146510903 -96153450 + MIR SINE MIR 117 144 -118 410 309 36 7 chr1 146511645 146511784 -96152569 + MIR3 SINE MIR 31 173 -35 440 327 166 14 chr1 146511808 146512019 -96152334 + MIR SINE MIR 20 262 0 295 271 186 57 chr1 146512044 146512222 -96152131 + MIR3 SINE MIR 9 207 -55 198 304 228 0 chr1 146512213 146512305 -96152048 + L2 LINE L2 3195 3307 -6 * 235 280 0 0 chr1 146512321 146512371 -96151982 - MIR SINE MIR -68 140 91 978 169 16 5 chr1 146512372 146512556 -96151797 - MER20 DNA MER1_type -33 186 1 263 321 0 12 chr1 146512556 146512637 -96151716 - MIR3 SINE MIR -125 83 4 295 272 169 7 chr1 146513055 146513191 -96151162 - MIR3 SINE MIR -10 198 41 183 80 0 0 chr1 146513322 146513347 -96151006 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 243 282 9 82 chr1 146513638 146513748 -96150605 + G-rich Low_complexity Low_complexity 2 103 0 189 291 0 0 chr1 146515456 146515511 -96148842 + MIR SINE MIR 183 237 -25 1155 122 29 6 chr1 146515517 146515689 -96148664 + AluSg SINE Alu 1 176 -134 701 125 0 0 chr1 146515794 146515898 -96148455 + AluY SINE Alu 204 307 -4 274 270 32 0 chr1 146516609 146516672 -96147681 - MIR SINE MIR -8 254 190 2286 110 3 3 chr1 146516979 146517287 -96147066 + AluSx SINE Alu 2 309 -3 244 132 0 0 chr1 146517343 146517381 -96146972 - LTR24 LTR ERV1 -320 147 110 218 230 24 143 chr1 146520049 146520175 -96144178 + L2 LINE L2 3183 3293 -20 511 311 12 30 chr1 146520995 146521159 -96143194 + MIR3 SINE MIR 47 207 -1 491 296 93 17 chr1 146521911 146522083 -96142270 - MIR3 SINE MIR -14 194 10 283 210 210 12 chr1 146522910 146522991 -96141362 - L2 LINE L2 -8 3264 3168 474 291 35 41 chr1 146523178 146523350 -96141003 + MIR3 SINE MIR 20 190 -18 258 318 25 33 chr1 146524385 146524506 -96139847 + MIR SINE MIR 34 152 -67 2310 89 26 0 chr1 146524873 146525176 -96139177 + AluY SINE Alu 1 311 0 1680 161 63 203 chr1 146525198 146525616 -96138737 - MER69 DNA AcHobo -7 2519 2044 2042 117 4 11 chr1 146525616 146525897 -96138456 + AluSg SINE Alu 1 279 -31 186 43 0 0 chr1 146525903 146525926 -96138427 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1680 161 63 203 chr1 146525926 146525964 -96138389 - MER69 DNA AcHobo -487 2039 1997 826 228 12 0 chr1 146525964 146526126 -96138227 + FRAM SINE Alu 1 164 -12 1680 161 63 203 chr1 146526126 146526501 -96137852 - MER69 DNA AcHobo -529 1997 1659 1353 240 94 16 chr1 146526538 146526922 -96137431 - MER69 DNA AcHobo -532 694 281 1898 119 35 48 chr1 146526922 146527232 -96137121 + AluSq SINE Alu 1 306 -7 231 96 58 0 chr1 146527245 146527297 -96137056 + GA-rich Low_complexity Low_complexity 4 58 0 308 333 86 31 chr1 146528544 146528706 -96135647 + L3b LINE CR1 1345 1515 -68 623 229 166 13 chr1 146529730 146529887 -96134466 + MER5A DNA MER1_type 9 189 0 2084 136 0 0 chr1 146529937 146530232 -96134121 - AluSx SINE Alu -17 295 1 636 244 83 0 chr1 146530703 146530871 -96133482 - MIR SINE MIR 0 262 81 23 0 0 0 chr1 146531862 146531885 -96132468 + AT_rich Low_complexity Low_complexity 1 23 0 271 352 102 0 chr1 146532291 146532399 -96131954 + L2 LINE L2 3116 3234 -38 252 298 0 53 chr1 146533582 146533676 -96130677 - MIR SINE MIR -109 153 65 647 249 63 26 chr1 146534904 146535093 -96129260 + MIR SINE MIR 44 239 -23 316 278 71 53 chr1 146535432 146535601 -96128752 + MIR SINE MIR 58 229 -33 397 260 113 21 chr1 146535952 146536095 -96128258 + MIR SINE MIR 35 191 -61 330 208 138 94 chr1 146536758 146536791 -96127562 + MIR SINE MIR 97 127 -135 1539 184 56 14 chr1 146536791 146537079 -96127274 + AluJo SINE Alu 1 300 -12 330 208 138 94 chr1 146537079 146537204 -96127149 + MIR SINE MIR 127 262 0 198 0 0 0 chr1 146537469 146537491 -96126862 + (CA)n Simple_repeat Simple_repeat 2 23 0 683 299 36 5 chr1 146537573 146537767 -96126586 - MIR SINE MIR -4 258 59 357 24 0 0 chr1 146539675 146539717 -96124636 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1000 267 98 0 chr1 146539720 146539986 -96124367 - MER69 DNA AcHobo -2234 292 1 542 328 71 5 chr1 146541231 146541429 -96122924 + MIR SINE MIR 34 244 -18 511 341 80 50 chr1 146542542 146543340 -96121013 - L2 LINE L2 -52 3220 2380 181 261 22 0 chr1 146544020 146544066 -96120287 - MIR SINE MIR -78 130 84 423 327 52 84 chr1 146544086 146544337 -96120016 + L2 LINE L2 3029 3271 -1 260 311 14 0 chr1 146544994 146545068 -96119285 + MIR SINE MIR 44 118 -90 21 0 0 0 chr1 146546737 146546758 -96117595 + AT_rich Low_complexity Low_complexity 1 21 0 906 261 31 43 chr1 146546954 146547211 -96117142 - MIR SINE MIR 0 262 9 493 249 54 97 chr1 146547690 146547825 -96116528 + MER5B DNA MER1_type 2 128 -50 2195 136 0 0 chr1 146547825 146548135 -96116218 + AluSx SINE Alu 1 310 -2 493 249 54 97 chr1 146548135 146548184 -96116169 + MER5B DNA MER1_type 128 178 0 2355 116 7 0 chr1 146548590 146548900 -96115453 + AluSx SINE Alu 1 312 0 979 289 48 43 chr1 146548997 146549413 -96114940 + L2 LINE L2 2894 3311 -2 1090 205 119 12 chr1 146550347 146550591 -96113762 + AluJb SINE Alu 1 270 -42 441 0 0 0 chr1 146550598 146550647 -96113706 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2187 107 13 0 chr1 146551053 146551361 -96112992 + AluSx SINE Alu 1 312 0 308 326 34 0 chr1 146551640 146551729 -96112624 + MIR SINE MIR 55 146 -62 1281 192 52 120 chr1 146551740 146552147 -96112206 - MLT1B LTR MaLR -11 379 1 225 349 62 7 chr1 146553218 146553364 -96110989 - L2 LINE L2 -203 3069 2916 243 300 0 0 chr1 146554204 146554264 -96110089 - L2 LINE L2 -3 3269 3210 1194 264 63 35 chr1 146554465 146554859 -96109494 - MLT1I LTR MaLR -4 405 1 835 175 93 6 chr1 146554889 146555048 -96109305 + MLT1A1 LTR MaLR 1 179 -186 180 0 0 0 chr1 146555048 146555068 -96109285 + (TC)n Simple_repeat Simple_repeat 1 20 0 835 175 93 6 chr1 146555068 146555091 -96109262 + MLT1A1 LTR MaLR 179 199 -166 577 195 25 3 chr1 146555421 146555573 -96108780 + MLT1A2 LTR MaLR 232 372 -2 548 236 84 39 chr1 146555575 146555753 -96108600 + MIR SINE MIR 77 262 0 184 347 14 0 chr1 146556028 146556100 -96108253 + MIR SINE MIR 89 161 -101 409 298 74 50 chr1 146557283 146557525 -96106828 - MIR SINE MIR 0 262 15 * 420 365 41 9 chr1 146557496 146557715 -96106638 + L2 LINE L2 2640 2865 -449 976 249 22 18 chr1 146557729 146557958 -96106395 - MIR SINE MIR -1 261 32 2423 189 17 7 chr1 146558131 146558550 -96105803 - MSTB LTR MaLR -2 424 2 9607 176 17 2 chr1 146558551 146560176 -96104177 - MSTB-int LTR MaLR 0 1651 2 1212 164 37 25 chr1 146560178 146560422 -96103931 - MSTB LTR MaLR -2 424 178 245 261 0 0 chr1 146560641 146560687 -96103666 - MIR SINE MIR -214 48 3 307 91 0 0 chr1 146560707 146560751 -96103602 + LTR7 LTR ERV1 1 44 -406 502 314 26 0 chr1 146561767 146561923 -96102430 - MIR3 SINE MIR -12 196 37 275 376 73 11 chr1 146565570 146565748 -96098605 + MIR3 SINE MIR 2 190 -18 195 42 0 0 chr1 146567413 146567437 -96096916 + (TAA)n Simple_repeat Simple_repeat 1 24 0 48 18 0 0 chr1 146567982 146568037 -96096316 + AT_rich Low_complexity Low_complexity 1 55 0 239 48 0 71 chr1 146568618 146568660 -96095693 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 613 196 0 0 chr1 146568666 146568768 -96095585 - FLAM_C SINE Alu -40 103 2 463 267 61 0 chr1 146569769 146569900 -96094453 + L2 LINE L2 2917 3055 -217 1381 157 83 109 chr1 146570209 146570669 -96093684 - LTR7 LTR ERV1 -2 448 1 245 261 0 0 chr1 146570689 146570735 -96093618 + MIR SINE MIR 3 48 -214 689 262 66 42 chr1 146570800 146571086 -96093267 + MLT1I LTR MaLR 117 409 0 310 235 128 20 chr1 146571097 146571199 -96093154 + MIR SINE MIR 57 169 -93 261 303 49 33 chr1 146571355 146571477 -96092876 + MIR SINE MIR 20 143 -65 194 250 0 0 chr1 146572204 146572248 -96092105 - L3b LINE CR1 -9 1574 1531 324 204 39 87 chr1 146572360 146572463 -96091890 + MIR SINE MIR 44 141 -67 730 261 152 63 chr1 146572467 146572596 -96091757 - L2 LINE L2 -1 3312 3196 2917 110 21 0 chr1 146572596 146573032 -96091321 - LTR56 LTR ERV1 0 445 1 730 261 152 63 chr1 146573032 146573419 -96090934 - L2 LINE L2 -117 3196 2751 370 152 61 0 chr1 146573434 146573500 -96090853 - MER116 DNA Mariner -10 70 1 569 310 15 81 chr1 146573530 146573865 -96090488 - L3 LINE CR1 -143 1434 1122 461 278 28 0 chr1 146574323 146574431 -96089922 + MIR SINE MIR 49 159 -103 405 250 69 7 chr1 146574472 146574616 -96089737 + L2 LINE L2 2533 2685 -629 1447 147 175 41 chr1 146574681 146574846 -96089507 - MLT1A1 LTR MaLR 0 365 224 2402 80 0 0 chr1 146574846 146575135 -96089218 - AluSc SINE Alu -13 296 8 1447 147 175 41 chr1 146575135 146575289 -96089064 - MLT1A1 LTR MaLR -141 224 3 566 264 111 9 chr1 146575310 146575526 -96088827 + L2 LINE L2 2662 2899 -415 238 260 68 0 chr1 146576290 146576363 -96087990 + MIR3 SINE MIR 131 208 0 2427 111 124 5 chr1 146576570 146576950 -96087403 - MSTA LTR MaLR -3 425 1 1018 171 0 23 chr1 146577029 146577205 -96087148 - AluJb SINE Alu -5 307 136 181 233 44 100 chr1 146577208 146577298 -96087055 + L2 LINE L2 3000 3084 -188 2022 136 17 0 chr1 146577454 146577748 -96086605 + AluSq SINE Alu 1 299 -14 318 132 0 0 chr1 146577772 146577825 -96086528 + (GGGA)n Simple_repeat Simple_repeat 3 55 0 271 289 62 23 chr1 146578329 146578457 -96085896 + L2 LINE L2 3160 3292 -21 851 272 59 74 chr1 146578757 146579228 -96085125 + LTR16B LTR ERVL 1 464 0 408 279 74 46 chr1 146580046 146580329 -96084024 + HAL1b LINE L1 406 696 -652 309 216 80 34 chr1 146580951 146581039 -96083314 + L1ME4a LINE L1 5980 6071 -50 21 0 0 0 chr1 146581123 146581144 -96083209 + AT_rich Low_complexity Low_complexity 1 21 0 255 303 84 0 chr1 146581151 146581293 -96083060 + L1ME4a LINE L1 5967 6120 -1 2184 121 7 7 chr1 146581304 146581601 -96082752 + AluSx SINE Alu 1 297 -15 1974 137 3 24 chr1 146582688 146582981 -96081372 + AluJo SINE Alu 10 296 -16 206 204 0 41 chr1 146583166 146583215 -96081138 - L2 LINE L2 -5 3267 3221 350 297 31 0 chr1 146583469 146583597 -96080756 + L1ME4a LINE L1 5671 5802 -319 2203 125 0 0 chr1 146583802 146584114 -96080239 + AluSx SINE Alu 1 312 0 356 138 15 0 chr1 146584121 146584186 -96080167 + GA-rich Low_complexity Low_complexity 3 68 0 227 263 59 66 chr1 146585563 146585715 -96078638 + L1ME4a LINE L1 5968 6118 -3 410 212 124 18 chr1 146585811 146585924 -96078429 + MER63 DNA MER1_type 1 751 -311 254 208 0 0 chr1 146585964 146586012 -96078341 + MER63 DNA MER1_type 978 1025 -36 251 320 20 10 chr1 146589717 146589817 -96074536 + L2 LINE L2 2917 3017 -255 184 274 85 38 chr1 146589991 146590097 -96074256 - L2 LINE L2 0 3272 3162 620 321 100 47 chr1 146590325 146590705 -96073648 + L2 LINE L2 2873 3272 0 372 291 214 0 chr1 146591174 146591291 -96073062 - L3 LINE CR1 -1 1576 1435 25 0 0 0 chr1 146591622 146591647 -96072706 + AT_rich Low_complexity Low_complexity 1 25 0 204 256 51 0 chr1 146592531 146592609 -96071744 + CT-rich Low_complexity Low_complexity 1 82 0 569 299 6 24 chr1 146594223 146594387 -96069966 - MIR3 SINE MIR -15 193 33 327 236 66 38 chr1 146595027 146595133 -96069220 + MIR3 SINE MIR 94 202 -6 378 0 0 0 chr1 146595991 146596033 -96068320 + (TG)n Simple_repeat Simple_repeat 1 42 0 439 240 85 65 chr1 146596398 146596598 -96067755 + MIR SINE MIR 35 238 -24 462 270 180 20 chr1 146596961 146597161 -96067192 + MIR SINE MIR 31 262 0 232 250 0 15 chr1 146597951 146598019 -96066334 + (TCTCTG)n Simple_repeat Simple_repeat 5 71 0 202 214 0 0 chr1 146598026 146598068 -96066285 + (TG)n Simple_repeat Simple_repeat 1 42 0 428 323 99 9 chr1 146600093 146600316 -96064037 - MIR SINE MIR -1 261 19 310 233 44 11 chr1 146600330 146600420 -96063933 - MIR3 SINE MIR -32 176 84 617 213 81 30 chr1 146602367 146602564 -96061789 + MIR3 SINE MIR 1 207 -1 249 250 0 0 chr1 146603451 146603503 -96060850 - L2 LINE L2 0 3272 3221 395 181 106 0 chr1 146603593 146603696 -96060657 + MIR SINE MIR 37 150 -78 217 254 15 15 chr1 146604333 146604400 -96059953 + CT-rich Low_complexity Low_complexity 1 67 0 219 88 0 0 chr1 146605987 146606021 -96058332 + (TTGG)n Simple_repeat Simple_repeat 3 36 0 2091 116 14 3 chr1 146606022 146606307 -96058046 - AluSx SINE Alu -24 288 1 219 248 117 44 chr1 146606364 146606501 -96057852 + MIR SINE MIR 8 154 -108 479 272 55 79 chr1 146607852 146608106 -96056247 + MIR SINE MIR 15 262 0 480 339 41 15 chr1 146608934 146609129 -96055224 - MIR SINE MIR -56 206 7 1427 163 10 0 chr1 146609376 146609585 -96054768 + AluJo SINE Alu 5 215 -97 361 328 42 0 chr1 146609668 146609787 -96054566 - L2 LINE L2 0 3272 3149 2214 94 0 14 chr1 146610530 146610840 -96053513 + AluSx SINE Alu 1 306 0 509 287 8 0 chr1 146611359 146611488 -96052865 - MIR3 SINE MIR -22 186 57 726 239 111 12 chr1 146611493 146611719 -96052634 - MIR SINE MIR 0 262 19 362 301 39 10 chr1 146611815 146611918 -96052435 - MIR SINE MIR -65 143 38 435 229 9 19 chr1 146612034 146612139 -96052214 + MIR SINE MIR 41 144 -64 220 205 0 0 chr1 146612529 146612568 -96051785 - L2 LINE L2 -94 3219 3181 1069 141 47 38 chr1 146612736 146612949 -96051404 + L1MC2 LINE L1 6116 6330 -14 595 189 0 0 chr1 146612954 146613060 -96051293 + FLAM_A SINE Alu 4 109 -33 243 0 0 0 chr1 146613110 146613137 -96051216 + (CA)n Simple_repeat Simple_repeat 2 28 0 905 194 92 9 chr1 146613781 146613998 -96050355 + MER46C DNA MER2_type 104 338 0 185 333 44 11 chr1 146613999 146614089 -96050264 + MIR SINE MIR 157 249 -13 2913 7 0 0 chr1 146615245 146615552 -96048801 - AluY SINE Alu -4 307 1 531 335 28 0 chr1 146616740 146616919 -96047434 + MIR SINE MIR 52 235 -27 311 290 6 57 chr1 146616984 146617160 -96047193 + C-rich Low_complexity Low_complexity 3 169 0 391 264 70 47 chr1 146617559 146617688 -96046665 - MIR3 SINE MIR -6 202 71 311 310 86 23 chr1 146617747 146617921 -96046432 + MER5A DNA MER1_type 5 189 0 446 248 53 0 chr1 146618624 146618737 -96045616 - L2 LINE L2 -22 3250 3132 322 252 159 0 chr1 146618780 146618887 -96045466 + MIR SINE MIR 133 256 -6 2433 93 0 0 chr1 146619114 146619415 -96044938 - AluY SINE Alu -10 301 1 471 314 26 0 chr1 146620758 146620914 -96043439 - MIR3 SINE MIR -12 196 37 1611 92 5 5 chr1 146622937 146623144 -96041209 - AluSg SINE Alu -103 207 1 1218 196 54 6 chr1 146623155 146623487 -96040866 - LTR37A LTR ERV1 -28 398 51 523 318 111 56 chr1 146623541 146623702 -96040651 + L2 LINE L2 1929 2080 -1234 2145 141 0 0 chr1 146623702 146624000 -96040353 - AluSq SINE Alu -15 298 1 523 318 111 56 chr1 146624000 146624287 -96040066 + L2 LINE L2 2080 2350 -964 1254 170 13 55 chr1 146624287 146624598 -96039755 - AluJo SINE Alu 0 302 5 523 318 111 56 chr1 146624598 146625019 -96039334 + L2 LINE L2 2350 2847 -467 228 324 56 0 chr1 146625359 146625430 -96038923 + L2 LINE L2 3107 3181 -91 241 365 83 35 chr1 146625635 146625780 -96038573 - L2 LINE L2 -5 3267 3116 21 89 0 0 chr1 146626064 146626120 -96038233 + GC_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr1 146626329 146626358 -96037995 + GC_rich Low_complexity Low_complexity 1 29 0 207 286 54 0 chr1 146626626 146626682 -96037671 - L2 LINE L2 -56 3216 3158 249 57 0 0 chr1 146626936 146626971 -96037382 + (GA)n Simple_repeat Simple_repeat 2 36 0 2350 105 0 16 chr1 146627130 146627445 -96036908 + AluSg SINE Alu 1 310 0 2067 124 26 10 chr1 146627463 146627769 -96036584 + AluSx SINE Alu 1 311 -1 368 266 57 8 chr1 146627947 146628071 -96036282 + MIR3 SINE MIR 75 204 -4 238 240 10 48 chr1 146629062 146629166 -96035187 + GA-rich Low_complexity Low_complexity 6 105 0 180 269 58 0 chr1 146629774 146629826 -96034527 - MIR SINE MIR -91 171 117 189 0 0 0 chr1 146629899 146629920 -96034433 + (A)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr1 146629974 146630000 -96034353 + AT_rich Low_complexity Low_complexity 1 26 0 2507 87 3 0 chr1 146630007 146630318 -96034035 + AluSx SINE Alu 1 312 0 456 311 33 13 chr1 146631441 146631592 -96032761 - MIR SINE MIR -33 229 76 1968 197 77 4 chr1 146631938 146632404 -96031949 - Charlie4a DNA MER1_type -1 507 8 250 289 143 6 chr1 146633153 146633314 -96031039 + MIR SINE MIR 16 206 -56 245 195 136 47 chr1 146633664 146633784 -96030569 - MIR SINE MIR -59 149 36 2441 92 0 3 chr1 146633825 146634130 -96030223 + AluSx SINE Alu 5 308 -4 213 309 99 0 chr1 146634788 146634869 -96029484 - MIR SINE MIR -48 214 126 480 201 124 34 chr1 146634907 146634967 -96029386 - Charlie1 DNA MER1_type 0 2761 2708 2406 84 3 3 chr1 146634967 146635264 -96029089 + AluSg SINE Alu 1 297 -13 480 201 124 34 chr1 146635264 146635412 -96028941 - Charlie1 DNA MER1_type -53 2708 2534 681 217 86 7 chr1 146635438 146635590 -96028763 - Charlie1 DNA MER1_type -2597 164 1 2106 136 7 0 chr1 146636140 146636449 -96027904 + AluSx SINE Alu 1 311 -1 215 381 57 0 chr1 146637638 146637743 -96026610 + L3b LINE CR1 1426 1536 -47 2532 78 0 0 chr1 146638008 146638314 -96026039 - AluSc SINE Alu 0 309 4 442 353 88 38 chr1 146638453 146638932 -96025421 + L2 LINE L2 2810 3312 -1 189 0 0 0 chr1 146640250 146640271 -96024082 + (A)n Simple_repeat Simple_repeat 1 21 0 393 221 171 0 chr1 146641173 146641313 -96023040 - L1MD3 LINE L1 0 7995 7832 424 202 0 12 chr1 146641319 146641403 -96022950 - L1MD2 LINE L1 -230 6129 6047 2258 88 14 7 chr1 146641404 146641698 -96022655 + AluSx SINE Alu 1 296 -16 763 189 66 9 chr1 146641704 146641916 -96022437 - L1MDa LINE L1 -4234 2306 2083 26 0 0 0 chr1 146641941 146641967 -96022386 + AT_rich Low_complexity Low_complexity 1 26 0 2310 207 37 87 chr1 146642124 146642828 -96021525 - L1MDa LINE L1 -5834 706 38 466 306 24 18 chr1 146642913 146643083 -96021270 + MIR SINE MIR 34 204 -58 1054 253 146 19 chr1 146643316 146643680 -96020673 + MLT1D LTR MaLR 95 504 -1 433 167 56 22 chr1 146643681 146643771 -96020582 - MIR3 SINE MIR -33 175 83 1401 166 58 54 chr1 146643786 146643937 -96020416 - AluJb SINE Alu -33 279 125 189 0 0 0 chr1 146643937 146643958 -96020395 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1401 166 58 54 chr1 146643958 146644084 -96020269 - AluJb SINE Alu -187 125 1 670 184 0 46 chr1 146644093 146644267 -96020086 - L1MB8 LINE L1 -1 6177 6012 2064 105 0 87 chr1 146645434 146645631 -96018722 - AluSq SINE Alu -1 312 154 2453 78 0 3 chr1 146645631 146645939 -96018414 - AluY SINE Alu -4 307 1 2064 105 0 87 chr1 146645939 146646073 -96018280 - AluSq SINE Alu -159 154 10 217 318 15 0 chr1 146646143 146646209 -96018144 - MIR SINE MIR -137 125 59 672 204 54 38 chr1 146646319 146646559 -96017794 - L1MA9 LINE L1 0 6312 6069 2352 112 0 6 chr1 146646643 146646957 -96017396 - AluSx SINE Alu 0 312 1 202 205 0 0 chr1 146647192 146647231 -96017122 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 33 0 0 0 chr1 146647252 146647285 -96017068 + AT_rich Low_complexity Low_complexity 1 33 0 200 118 0 78 chr1 146647585 146647636 -96016717 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr1 146647690 146647714 -96016639 + AT_rich Low_complexity Low_complexity 1 24 0 7348 27 2 0 chr1 146647714 146648955 -96015398 - L1PA4 LINE L1 -8 6147 4906 206 94 31 0 chr1 146648960 146648992 -96015361 - L2 LINE L2 -16 3297 3265 1879 195 61 67 chr1 146649003 146649511 -96014842 + MLT1D LTR MaLR 1 505 0 207 0 0 0 chr1 146649535 146649558 -96014795 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 839 350 122 30 chr1 146649589 146650606 -96013747 + L2 LINE L2 1750 2860 -454 446 293 36 42 chr1 146650666 146650833 -96013520 + MIR SINE MIR 13 178 -84 189 323 45 23 chr1 146650894 146651027 -96013326 + L2 LINE L2 2923 3058 -214 2214 113 3 0 chr1 146651756 146652056 -96012297 - AluSc SINE Alu -8 301 1 376 307 74 54 chr1 146652406 146652702 -96011651 - L2 LINE L2 -5 3267 2966 2024 193 50 128 chr1 146652841 146653357 -96010996 - MER70B LTR ERVL 0 578 118 2170 130 0 0 chr1 146653357 146653650 -96010703 - AluSx SINE Alu -19 293 1 2024 193 50 128 chr1 146653650 146653759 -96010594 - MER70B LTR ERVL -460 118 2 19673 166 24 15 chr1 146653768 146654115 -96010238 - MER70B-int LTR ERVL 0 5023 4681 243 0 0 0 chr1 146654115 146654142 -96010211 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 19673 166 24 15 chr1 146654142 146656768 -96007585 - MER70B-int LTR ERVL -342 4681 2011 2286 89 0 3 chr1 146656768 146657080 -96007273 - AluSc SINE Alu 0 312 2 19673 166 24 15 chr1 146657080 146657475 -96006878 - MER70B-int LTR ERVL -3012 2011 1621 7698 149 8 9 chr1 146657475 146658668 -96005685 - MER70B-int LTR ERVL -3832 1191 1 2157 235 27 0 chr1 146658670 146659146 -96005207 - MER70B LTR ERVL 0 578 90 939 159 0 31 chr1 146659145 146659308 -96005045 - MER70A LTR ERVL -313 159 2 * 2445 106 35 27 chr1 146659879 146660430 -96003923 + MER51A LTR ERV1 1 634 0 203 296 4 0 chr1 146661588 146661659 -96002694 - MIR SINE MIR -79 129 57 1584 142 0 16 chr1 146663384 146663631 -96000722 + AluJb SINE Alu 67 309 -3 213 340 51 91 chr1 146664818 146665015 -95999338 + L2 LINE L2 3034 3222 -50 182 262 49 33 chr1 146666632 146666693 -95997660 - MIR SINE MIR -102 106 45 312 211 70 130 chr1 146667487 146667672 -95996681 - L1ME4a LINE L1 -10 6111 5938 419 204 11 0 chr1 146668088 146668176 -95996177 - MER33 DNA MER1_type -1 362 274 610 199 29 44 chr1 146668180 146668316 -95996037 - FLAM_C SINE Alu -8 135 2 751 151 133 69 chr1 146668319 146668401 -95995952 - MER33 DNA MER1_type -2353 232 157 2178 108 0 14 chr1 146668401 146668698 -95995655 + AluSg SINE Alu 1 293 -17 751 151 133 69 chr1 146668698 146668833 -95995520 - MER33 DNA MER1_type -2428 157 1 496 124 101 0 chr1 146669015 146669104 -95995249 + MER4A LTR ERV1 1 98 -566 1713 131 22 78 chr1 146669104 146669470 -95994883 + MER4A LTR ERV1 261 664 0 614 160 9 9 chr1 146669536 146669642 -95994711 - MLT1D LTR MaLR -35 470 365 2501 166 23 54 chr1 146669654 146670206 -95994147 - MER41B LTR ERV1 -12 597 100 926 235 59 95 chr1 146670224 146670358 -95993995 - L2 LINE L2 -467 2847 2710 1836 165 3 7 chr1 146670358 146670649 -95993704 - AluJo SINE Alu -9 303 14 926 235 59 95 chr1 146670649 146670987 -95993366 - L2 LINE L2 -604 2710 2392 274 273 50 0 chr1 146671062 146671161 -95993192 - MIR SINE MIR -84 178 75 2239 106 3 0 chr1 146671336 146671629 -95992724 - AluSp SINE Alu -18 295 2 356 202 90 34 chr1 146672449 146672538 -95991815 - L2 LINE L2 -40 3273 3180 391 289 53 0 chr1 146674170 146674284 -95990069 - L2 LINE L2 -15 3257 3138 293 246 182 27 chr1 146674540 146674650 -95989703 - MIR SINE MIR -44 218 92 390 271 8 8 chr1 146675002 146675131 -95989222 + MIR SINE MIR 132 260 -2 414 154 0 0 chr1 146675561 146675639 -95988714 + GA-rich Low_complexity Low_complexity 2 79 0 448 345 75 4 chr1 146676047 146676299 -95988054 - L3 LINE CR1 -53 1524 1255 495 256 113 101 chr1 146676451 146677470 -95986883 + L1MEd LINE L1 16 1050 -5069 1555 190 108 35 chr1 146677470 146677896 -95986457 - MSTB2 LTR MaLR 0 457 1 495 256 113 101 chr1 146677896 146677952 -95986401 + L1MEd LINE L1 1050 1104 -5015 449 276 48 0 chr1 146678061 146678166 -95986187 - L1ME LINE L1 -442 5728 5619 * 981 196 31 8 chr1 146678165 146678420 -95985933 + L1MEd LINE L1 3023 3283 -2846 350 204 31 20 chr1 146678868 146678966 -95985387 - L2 LINE L2 -1 3312 3214 2663 52 3 0 chr1 146678977 146679287 -95985066 - AluY SINE Alu 0 311 1 191 264 0 83 chr1 146679372 146679401 -95984952 - L2 LINE L2 0 3313 3283 2148 134 3 0 chr1 146679401 146679706 -95984647 - AluSx SINE Alu -4 308 3 191 264 0 83 chr1 146679706 146679748 -95984605 - L2 LINE L2 -30 3283 3248 315 313 78 38 chr1 146680398 146680565 -95983788 + MIR SINE MIR 30 206 -56 423 185 0 0 chr1 146680706 146680798 -95983555 - L1MA9 LINE L1 0 6312 6221 433 237 62 107 chr1 146680798 146680909 -95983444 + MER57B LTR ERV1 3 117 -315 1818 139 66 14 chr1 146680909 146681197 -95983156 + AluSx SINE Alu 1 303 -9 433 237 62 107 chr1 146681197 146681309 -95983044 + MER57B LTR ERV1 117 245 -187 518 145 16 16 chr1 146681439 146681550 -95982803 + MER57A LTR ERV1 316 403 0 706 263 30 36 chr1 146681553 146681813 -95982540 + MER57A-int LTR ERV1 3 299 -7238 460 165 105 69 chr1 146682163 146682397 -95981956 + MER57A-int LTR ERV1 887 2969 -3362 * 3019 213 99 90 chr1 146682376 146683925 -95980428 + MER31-int LTR ERV1 2404 5821 -1494 594 187 0 0 chr1 146683942 146684033 -95980320 + AluJo SINE Alu 2 92 -220 413 185 36 46 chr1 146684048 146684210 -95980143 - LTR23-int LTR ERV1 -2563 2373 2246 965 191 4 57 chr1 146684210 146684440 -95979913 + AluJo SINE Alu 95 312 0 1179 259 11 69 chr1 146684768 146685146 -95979207 + MER31-int LTR ERV1 5825 6180 -1357 547 354 24 5 chr1 146690397 146690609 -95973744 + MER31-int LTR ERV1 6794 7009 -528 546 201 62 29 chr1 146690702 146690864 -95973489 - L1MA9 LINE L1 -129 6042 5877 308 315 47 47 chr1 146691769 146692076 -95972277 - L2 LINE L2 -204 3068 2767 192 359 26 0 chr1 146692592 146692670 -95971683 - MIR3 SINE MIR -8 200 121 278 269 96 0 chr1 146692688 146692792 -95971561 - L1ME4a LINE L1 -11 6110 5997 413 313 73 10 chr1 146695654 146695846 -95968507 - MIR SINE MIR -56 206 3 505 277 124 20 chr1 146696551 146696800 -95967553 - MER102a DNA MER1_type -21 309 35 1511 200 11 0 chr1 146697543 146697813 -95966540 + AluJo SINE Alu 19 291 -21 779 184 65 43 chr1 146697831 146698016 -95966337 + MER5A DNA MER1_type 1 189 0 207 241 76 38 chr1 146698066 146698145 -95966208 - L2 LINE L2 -190 3082 3001 595 231 90 6 chr1 146698659 146698815 -95965538 + LTR41 LTR ERVL 1 169 -604 458 251 103 23 chr1 146699073 146699318 -95965035 + LTR41 LTR ERVL 514 795 0 2311 96 0 40 chr1 146699503 146699826 -95964527 - AluSg SINE Alu 0 310 1 2728 136 0 0 chr1 146699826 146700232 -95964121 - L1PA16 LINE L1 -11 6155 5750 288 299 26 32 chr1 146700467 146700621 -95963732 - L1MEc LINE L1 -6134 262 110 667 221 0 0 chr1 146700654 146700781 -95963572 - FRAM SINE Alu -5 171 45 534 322 50 52 chr1 146702121 146702540 -95961813 + L1 LINE L1 4180 4597 -1549 261 239 0 33 chr1 146702612 146702704 -95961649 + L1 LINE L1 4746 4834 -1312 312 305 152 6 chr1 146703040 146703204 -95961149 + L1MC/D LINE L1 5284 5471 -2337 535 263 121 78 chr1 146703430 146703917 -95960436 - MLT1J LTR MaLR -3 508 1 620 199 81 8 chr1 146704003 146704239 -95960114 + HsTC2 DNA Tc2 1647 1899 0 9158 33 2 1 chr1 146704361 146705431 -95958922 + MER11C LTR ERVK 1 1071 0 2017 125 0 33 chr1 146705464 146705769 -95958584 - AluSx SINE Alu -17 295 1 264 217 0 65 chr1 146706253 146706329 -95958024 + L1M4 LINE L1 3375 3446 -2700 2344 108 0 0 chr1 146706329 146706634 -95957719 + AluSg SINE Alu 1 305 -5 264 217 0 65 chr1 146706634 146706649 -95957704 + L1M4 LINE L1 3446 3460 -2686 286 259 0 35 chr1 146706728 146706844 -95957509 - L1M4 LINE L1 -3009 3137 3026 1401 141 31 4 chr1 146707062 146707317 -95957036 - L1MA4 LINE L1 -12 6288 6027 1622 113 8 24 chr1 146707326 146707704 -95956649 - L1M2 LINE L1 -509 6484 5987 183 80 0 0 chr1 146707796 146707821 -95956532 + (CCCCAG)n Simple_repeat Simple_repeat 2 26 0 1900 154 26 8 chr1 146708304 146708686 -95955667 - L1M2 LINE L1 -847 6001 5613 5444 153 19 10 chr1 146709516 146710595 -95953758 - L1M2 LINE L1 -1226 5622 4534 2445 42 0 60 chr1 146711182 146711513 -95952840 + AluY SINE Alu 1 311 0 2268 97 10 3 chr1 146711668 146711976 -95952377 + AluSq SINE Alu 1 310 -3 698 276 92 77 chr1 146712268 146713230 -95951123 + L1MEc LINE L1 826 1801 -4595 * 2645 255 43 76 chr1 146713229 146715143 -95949210 + L1MEc LINE L1 2456 4305 -1910 434 305 58 18 chr1 146716423 146716649 -95947704 + LTR16C LTR ERVL 156 390 -101 244 215 195 40 chr1 146716797 146716946 -95947407 - L1ME3 LINE L1 -109 6053 5882 297 109 219 0 chr1 146716955 146717019 -95947334 - AluSc SINE Alu 0 299 222 809 98 0 0 chr1 146717022 146717124 -95947229 - AluJb SINE Alu -124 188 87 1669 245 67 17 chr1 146717128 146717729 -95946624 - L1ME3 LINE L1 -278 5884 5254 483 276 104 0 chr1 146717947 146718081 -95946272 - MER5A DNA MER1_type 0 189 42 5126 198 16 53 chr1 146718085 146718383 -95945970 - L1M2 LINE L1 -2560 4288 3980 2102 108 3 7 chr1 146718383 146718680 -95945673 - AluSq SINE Alu -17 296 1 2113 139 0 0 chr1 146718682 146718976 -95945377 - AluSx SINE Alu -18 294 1 5126 198 16 53 chr1 146718976 146719373 -95944980 - L1M2 LINE L1 -2869 3979 3569 2542 48 0 10 chr1 146719373 146719684 -95944669 - AluY SINE Alu -3 308 1 5126 198 16 53 chr1 146719684 146720548 -95943805 - L1M2 LINE L1 -3279 3569 2787 779 332 64 34 chr1 146720534 146721318 -95943035 - L1MEc LINE L1 -5555 841 35 * 202 231 0 39 chr1 146721637 146721689 -95942664 + GA-rich Low_complexity Low_complexity 3 52 0 6138 170 5 10 chr1 146721952 146724266 -95940087 - L1PB2 LINE L1 -3 6148 3847 316 208 13 13 chr1 146724352 146724429 -95939924 + MER52A LTR ERV1 1 77 -1678 6485 185 72 52 chr1 146724815 146726338 -95938015 + MER52A LTR ERV1 204 1755 0 583 288 91 21 chr1 146726830 146727115 -95937238 + Charlie2 DNA MER1_type 23 327 -2455 520 258 32 14 chr1 146727115 146727332 -95937021 + Charlie2 DNA MER1_type 1856 2076 -786 251 229 66 0 chr1 146727463 146727524 -95936829 - MER96 DNA MER1_type? -4 171 107 255 265 60 0 chr1 146727687 146727770 -95936583 - MIR SINE MIR -56 206 119 22 0 0 0 chr1 146727835 146727857 -95936496 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 146727880 146727904 -95936449 + AT_rich Low_complexity Low_complexity 1 24 0 41472 46 2 1 chr1 146727904 146734053 -95930300 - L1PA4 LINE L1 0 6155 1 1419 229 22 26 chr1 146734059 146734549 -95929804 + Charlie2 DNA MER1_type 2068 2555 -307 2051 151 22 40 chr1 146734551 146734922 -95929431 + THE1B LTR MaLR 1 364 0 271 56 0 0 chr1 146734922 146734958 -95929395 + THE1B-int LTR MaLR 1 36 -1544 309 298 48 0 chr1 146734959 146735127 -95929226 + Charlie2 DNA MER1_type 1988 2163 -699 10565 99 21 2 chr1 146735129 146736631 -95927722 + THE1B-int LTR MaLR 50 1580 0 1902 128 90 29 chr1 146736631 146736974 -95927379 + THE1B LTR MaLR 1 364 0 778 236 49 4 chr1 146736974 146737241 -95927112 + Charlie2 DNA MER1_type 2553 2831 -31 521 247 132 16 chr1 146737430 146737673 -95926680 - Charlie2b DNA MER1_type -2118 664 394 433 225 67 0 chr1 146737787 146737907 -95926446 - L1MA10 LINE L1 -26 6308 6181 717 233 35 61 chr1 146737914 146738364 -95925989 - L1MEc LINE L1 -3696 2521 2121 801 238 65 0 chr1 146738378 146738563 -95925790 - AluJb SINE Alu -115 197 1 3575 183 58 19 chr1 146738591 146739317 -95925036 + L1MA3 LINE L1 16 769 -6796 281 217 43 78 chr1 146739322 146739437 -95924916 + LTR4 LTR ERV1 7 117 -479 659 263 20 28 chr1 146739716 146739963 -95924390 + LTR4 LTR ERV1 352 596 0 17132 157 21 14 chr1 146739963 146741589 -95922764 + L1MA3 LINE L1 756 2370 -5195 1767 165 0 11 chr1 146741589 146741868 -95922485 - AluJo SINE Alu -36 276 1 17132 157 21 14 chr1 146741868 146744562 -95919791 + L1MA3 LINE L1 2370 5118 -2447 279 0 0 0 chr1 146744562 146744593 -95919760 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 17132 157 21 14 chr1 146744593 146745229 -95919124 + L1MA3 LINE L1 5118 5748 -1817 7988 49 0 7 chr1 146745226 146746290 -95918063 - L1P LINE L1 -3813 2333 1277 * 6810 31 5 0 chr1 146746284 146747163 -95917190 + L1P LINE L1 2342 3224 -2922 * 14564 40 1 7 chr1 146747160 146747412 -95916941 + L1P LINE L1 3506 3758 -2388 2671 36 0 0 chr1 146747412 146747717 -95916636 + AluY SINE Alu 1 305 -6 14564 40 1 7 chr1 146747717 146749368 -95914985 + L1P LINE L1 3758 5397 -749 30046 38 18 1 chr1 146749372 146754764 -95909589 + L1PA3 LINE L1 638 6155 0 6554 139 17 11 chr1 146754755 146756728 -95907625 + L1MA3 LINE L1 5731 7716 -8 * 547 203 16 9 chr1 146757147 146757414 -95906939 + MLT1B LTR MaLR 1 390 0 1071 290 133 35 chr1 146758346 146758974 -95905379 - L1MEd LINE L1 -4863 1256 691 1923 139 0 0 chr1 146758974 146759283 -95905070 - AluSx SINE Alu 0 310 2 1071 290 133 35 chr1 146759283 146759792 -95904561 - L1MEd LINE L1 -5428 691 6 266 255 47 53 chr1 146760057 146760202 -95904151 - MIR3 SINE MIR -32 176 35 1527 258 94 97 chr1 146761293 146761338 -95903015 - MER45C DNA AcHobo -635 946 902 2210 145 22 3 chr1 146761338 146761696 -95902657 - MLT1A1 LTR MaLR 0 365 1 1527 258 94 97 chr1 146761696 146762523 -95901830 - MER45C DNA AcHobo -679 902 77 557 251 153 49 chr1 146763017 146763030 -95901323 - L1MCc LINE L1 -5190 1233 1223 2286 161 35 9 chr1 146763030 146763453 -95900900 - Tigger2a DNA MER2_type 0 434 1 557 251 153 49 chr1 146763453 146763826 -95900527 - L1MCc LINE L1 -5200 1223 807 1896 104 97 0 chr1 146763963 146764231 -95900122 - AluSg SINE Alu -16 294 1 601 270 108 29 chr1 146764295 146764676 -95899677 - L1MCc LINE L1 -5927 496 86 1788 147 34 0 chr1 146764749 146765043 -95899310 + AluSx SINE Alu 23 312 0 901 204 0 0 chr1 146765053 146765210 -95899143 + FRAM SINE Alu 1 157 -19 367 225 42 0 chr1 146765694 146765765 -95898588 - L2 LINE L2 0 3272 3199 239 351 67 15 chr1 146765941 146766075 -95898278 + L2 LINE L2 3132 3272 0 414 0 0 0 chr1 146766134 146766180 -95898173 + (T)n Simple_repeat Simple_repeat 1 46 0 396 0 0 0 chr1 146766893 146766937 -95897416 + (TG)n Simple_repeat Simple_repeat 1 44 0 1684 175 10 32 chr1 146768490 146768799 -95895554 + AluJo SINE Alu 1 302 -10 200 297 0 45 chr1 146769634 146769745 -95894608 + CT-rich Low_complexity Low_complexity 1 106 0 230 325 26 26 chr1 146770058 146770172 -95894181 + L2 LINE L2 2978 3091 -181 310 324 169 0 chr1 146770625 146770773 -95893580 + MER5A DNA MER1_type 17 189 0 822 233 10 5 chr1 146770898 146771091 -95893262 + MER82 DNA MER2_type 8 201 -452 444 14 29 29 chr1 146771383 146771453 -95892900 + (TTTA)n Simple_repeat Simple_repeat 4 73 0 1618 258 0 0 chr1 146771453 146771821 -95892532 + MER82 DNA MER2_type 285 652 -1 293 260 10 10 chr1 146772666 146772766 -95891587 + MLT1L LTR MaLR 512 611 -4 1218 211 4 8 chr1 146772893 146773130 -95891223 - MER46A DNA MER2_type 0 236 1 1790 180 40 0 chr1 146773375 146773698 -95890655 - LOR1a LTR ERV1 0 497 162 16426 115 26 17 chr1 146773711 146775090 -95889263 + LOR1-int LTR ERV1 4 1369 -6751 2566 43 0 0 chr1 146775090 146775390 -95888963 - AluY SINE Alu -11 300 1 16426 115 26 17 chr1 146775390 146775920 -95888433 + LOR1-int LTR ERV1 1369 1893 -6227 4037 116 8 15 chr1 146775920 146776568 -95887785 - L1PA14 LINE L1 0 6161 5519 16426 115 26 17 chr1 146776568 146777448 -95886905 + LOR1-int LTR ERV1 1893 2819 -5301 1960 132 17 3 chr1 146777454 146777741 -95886612 + AluSx SINE Alu 1 291 -21 2154 105 7 13 chr1 146779021 146779325 -95885028 - AluSq SINE Alu -11 302 1 3856 18 0 0 chr1 146779730 146780497 -95883856 - L1P1 LINE L1 -481 5674 4908 * 4126 0 0 0 chr1 146780496 146780973 -95883380 + L1HS LINE L1 5679 6155 0 192 40 0 0 chr1 146780975 146781000 -95883353 + (TAAAAA)n Simple_repeat Simple_repeat 3 27 0 189 0 0 0 chr1 146781015 146781036 -95883317 + (A)n Simple_repeat Simple_repeat 1 21 0 7152 163 8 9 chr1 146781255 146783762 -95880591 + L1PB2 LINE L1 3650 6151 0 778 251 80 118 chr1 146785027 146785488 -95878865 + MLT1J LTR MaLR 1 441 -70 2188 127 0 7 chr1 146785488 146785796 -95878557 - AluSx SINE Alu -6 306 1 778 251 80 118 chr1 146785796 146785859 -95878494 + MLT1J LTR MaLR 441 505 -6 906 319 66 8 chr1 146787118 146787513 -95876840 - LTR16A LTR ERVL 0 450 33 228 67 0 0 chr1 146787762 146787792 -95876561 + (TTCTCC)n Simple_repeat Simple_repeat 1 30 0 2017 120 13 7 chr1 146787792 146788091 -95876262 - AluSc SINE Alu -8 301 1 2241 69 0 7 chr1 146788434 146788725 -95875628 - L1PA6 LINE L1 -2 6152 5864 30 0 0 0 chr1 146789229 146789259 -95875094 + AT_rich Low_complexity Low_complexity 1 30 0 5266 32 8 0 chr1 146789259 146789887 -95874466 - L1PA4 LINE L1 -3 6152 5520 17424 81 4 0 chr1 146789887 146792302 -95872051 - L1P LINE L1 -3720 2426 2 5330 73 4 0 chr1 146793093 146793781 -95870572 - L1PA7 LINE L1 0 6154 5464 7009 104 4 11 chr1 146793781 146795005 -95869348 - L1P3 LINE L1 -4500 1961 746 4060 207 60 24 chr1 146795535 146796578 -95867775 - Tigger6a DNA MER2_type -1 1082 2 307 336 55 20 chr1 146796662 146796808 -95867545 - L1MEd LINE L1 -5503 616 466 401 319 58 26 chr1 146796994 146797185 -95867168 - L1MEd LINE L1 -5869 250 54 2234 116 0 0 chr1 146797185 146797479 -95866874 - AluSg SINE Alu -6 304 11 196 263 26 53 chr1 146797733 146797809 -95866544 - MIR3 SINE MIR -9 199 126 911 195 20 172 chr1 146799184 146799388 -95864965 - MLT1A2 LTR MaLR 0 374 271 180 0 0 0 chr1 146799388 146799408 -95864945 + (CA)n Simple_repeat Simple_repeat 1 20 0 911 195 20 172 chr1 146799408 146799644 -95864709 - MLT1A2 LTR MaLR -103 271 1 323 217 87 35 chr1 146799848 146799963 -95864390 - MLT1I LTR MaLR -17 392 272 277 248 35 44 chr1 146800011 146800124 -95864229 - MLT1J2 LTR MaLR -257 193 82 1735 191 3 7 chr1 146800503 146800796 -95863557 - AluJb SINE Alu -19 293 2 190 297 62 0 chr1 146805768 146805832 -95858521 + L2 LINE L2 2999 3066 -206 194 282 100 73 chr1 146806432 146806542 -95857811 - L2 LINE L2 0 3313 3201 22 35 0 0 chr1 146806593 146806622 -95857731 + AT_rich Low_complexity Low_complexity 1 29 0 719 238 85 35 chr1 146806624 146806990 -95857363 - L1ME1 LINE L1 -4 6162 5779 21 36 0 0 chr1 146807207 146807235 -95857118 + AT_rich Low_complexity Low_complexity 1 28 0 4327 250 23 25 chr1 146807246 146809769 -95854584 + L1PA15 LINE L1 1 2860 -3937 1699 178 7 23 chr1 146809769 146810072 -95854281 + AluJb SINE Alu 13 310 -2 4327 250 23 25 chr1 146810072 146810557 -95853796 + L1PA15 LINE L1 2860 3345 -3452 * 21845 77 15 8 chr1 146810556 146812865 -95851488 - L1P LINE L1 -1428 4718 2376 2212 123 0 0 chr1 146812865 146813157 -95851196 - AluY SINE Alu -14 297 6 21845 77 15 8 chr1 146813157 146814067 -95850286 - L1P LINE L1 -3770 2376 1474 459 156 0 0 chr1 146814067 146814144 -95850209 - L1P LINE L1 -6059 87 11 6830 240 19 6 chr1 146814159 146816057 -95848296 + L1PA15 LINE L1 3401 5322 -1475 27709 69 3 1 chr1 146816059 146819860 -95844493 + L1PA4 LINE L1 1 3810 -2336 12204 34 1 0 chr1 146819862 146822099 -95842254 + L1PA4 LINE L1 3913 6155 0 3073 163 13 2 chr1 146822111 146823038 -95841315 + L1PA15 LINE L1 5330 6263 -553 759 145 7 7 chr1 146823039 146823177 -95841176 + L1PA15 LINE L1 6675 6812 -4 204 217 50 0 chr1 146823255 146823315 -95841038 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 9888 183 31 17 chr1 146823321 146824241 -95840112 - L1M2 LINE L1 -745 5583 4677 2001 160 42 25 chr1 146824241 146824598 -95839755 + THE1B LTR MaLR 2 364 0 9888 183 31 17 chr1 146824598 146825407 -95838946 - L1M2 LINE L1 -1651 4677 3880 1913 164 3 0 chr1 146825407 146825706 -95838647 - AluJb SINE Alu -4 308 9 9888 183 31 17 chr1 146825706 146826190 -95838163 - L1M2 LINE L1 -2448 3880 3394 1996 132 14 0 chr1 146826190 146826485 -95837868 - AluSx SINE Alu -13 299 1 9888 183 31 17 chr1 146826485 146826760 -95837593 - L1M2 LINE L1 -2934 3394 3124 40019 40 22 2 chr1 146826764 146832790 -95831563 - L1PA3 LINE L1 -3 6152 1 4173 248 34 35 chr1 146832791 146833863 -95830490 - L1M2 LINE L1 -3173 3155 2083 1547 97 19 0 chr1 146833863 146834079 -95830274 - L1PA11 LINE L1 -8 6166 5947 4173 248 34 35 chr1 146834079 146834351 -95830002 - L1M2 LINE L1 -4245 2083 1812 1242 213 3 97 chr1 146834351 146834671 -95829682 - AluJb SINE Alu -12 290 1 4173 248 34 35 chr1 146834671 146835955 -95828398 - L1M2 LINE L1 -4516 1812 535 646 375 14 16 chr1 146836104 146836544 -95827809 - L1M3a LINE L1 -5506 449 11 310 324 55 51 chr1 146836563 146836816 -95827537 + L1MC4a LINE L1 6414 6667 -1141 584 254 82 77 chr1 146836833 146837262 -95827091 + L1MC5 LINE L1 6718 7148 -813 758 219 76 76 chr1 146837299 146837706 -95826647 + Charlie1b DNA MER1_type 7 413 -110 294 29 0 0 chr1 146837742 146837777 -95826576 + (CA)n Simple_repeat Simple_repeat 2 36 0 626 95 19 0 chr1 146837820 146837925 -95826428 - L1MB4 LINE L1 0 6180 6074 1083 246 28 34 chr1 146838031 146838065 -95826288 + L1MC5 LINE L1 7306 7339 -622 2459 62 0 10 chr1 146838065 146838373 -95825980 - AluY SINE Alu -6 305 1 1083 246 28 34 chr1 146838373 146838809 -95825544 + L1MC5 LINE L1 7339 7773 -188 2163 119 0 0 chr1 146838888 146839198 -95825155 - AluSx SINE Alu 0 310 1 1164 151 5 19 chr1 146839224 146839436 -95824917 - LTR12 LTR ERV1 -505 209 1 216 266 63 13 chr1 146839835 146839914 -95824439 - L2 LINE L2 -221 3051 2969 232 185 31 31 chr1 146840067 146840132 -95824221 + HsTC2 DNA Tc2 3 67 -1831 26 0 0 0 chr1 146840189 146840215 -95824138 + AT_rich Low_complexity Low_complexity 1 26 0 2472 174 40 2 chr1 146840393 146840864 -95823489 + L1MB2 LINE L1 5676 6164 -7 354 91 0 0 chr1 146844080 146844135 -95820218 + (TG)n Simple_repeat Simple_repeat 2 56 0 2157 123 0 3 chr1 146845267 146845560 -95818793 - AluSc SINE Alu -17 292 1 2379 133 24 38 chr1 146845757 146846208 -95818145 - MER65A LTR ERV1 0 445 1 550 159 0 80 chr1 146846767 146846905 -95817448 + L1MA9 LINE L1 5906 6032 -280 3911 196 8 7 chr1 146846913 146847644 -95816709 - MER44D DNA MER2_type -1 604 1 271 304 63 5 chr1 146847663 146847870 -95816483 - L1M4 LINE L1 -1832 4314 4096 2068 136 0 7 chr1 146847874 146848168 -95816185 - AluSx SINE Alu -20 292 1 39158 72 1 0 chr1 146848199 146854338 -95810015 + L1PA4 LINE L1 11 6154 -1 22 0 0 0 chr1 146854548 146854570 -95809783 + AT_rich Low_complexity Low_complexity 1 22 0 2014 132 0 20 chr1 146854590 146854893 -95809460 - AluSx SINE Alu -15 297 1 4248 221 10 5 chr1 146854894 146855955 -95808398 - L1 LINE L1 -1125 5021 3955 885 224 15 15 chr1 146855952 146856220 -95808133 - L1 LINE L1 -2619 3527 3260 * 6223 89 52 0 chr1 146856221 146857134 -95807219 - L1PA13 LINE L1 -2 6161 5241 448 288 58 10 chr1 146857134 146857339 -95807014 - L1PA13 LINE L1 -4956 1831 1617 470 46 15 0 chr1 146857344 146857409 -95806944 + (TA)n Simple_repeat Simple_repeat 1 66 0 279 0 0 0 chr1 146857408 146857439 -95806914 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 1658 172 65 73 chr1 146857763 146857832 -95806521 - L1 LINE L1 -1635 4511 4443 2327 87 0 0 chr1 146857832 146858118 -95806235 - AluSc SINE Alu -17 292 7 1658 172 65 73 chr1 146858118 146858571 -95805782 - L1 LINE L1 -1703 4443 3993 4234 161 48 26 chr1 146858577 146858722 -95805631 + L1MA9 LINE L1 5088 5228 -1084 2261 102 7 3 chr1 146858722 146859017 -95805336 + AluSq SINE Alu 2 297 -16 4234 161 48 26 chr1 146859017 146859092 -95805261 + L1MA9 LINE L1 5228 5300 -1012 234 0 0 0 chr1 146859092 146859118 -95805235 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4234 161 48 26 chr1 146859118 146859949 -95804404 + L1MA9 LINE L1 5300 6155 -157 1810 73 0 81 chr1 146859965 146860226 -95804127 + AluY SINE Alu 1 240 -71 4298 119 73 55 chr1 146860226 146861651 -95802702 - pTR5 LTR ERV1 0 2606 1524 470 76 0 0 chr1 146861651 146861717 -95802636 + AluY SINE Alu 239 304 -7 646 126 6 144 chr1 146861718 146861832 -95802521 + L1MA9 LINE L1 6168 6253 -59 325 173 40 0 chr1 146861832 146861907 -95802446 - L1MB3 LINE L1 -7 6176 6099 646 126 6 144 chr1 146861907 146861959 -95802394 + L1MA9 LINE L1 6253 6311 -1 21 36 0 0 chr1 146862128 146862156 -95802197 + AT_rich Low_complexity Low_complexity 1 28 0 2273 93 3 3 chr1 146862381 146862682 -95801671 - AluY SINE Alu -10 301 1 27 0 0 0 chr1 146862736 146862763 -95801590 + AT_rich Low_complexity Low_complexity 1 27 0 1735 164 54 4 chr1 146863030 146863310 -95801043 - AluSg SINE Alu -16 294 1 1928 134 0 29 chr1 146863328 146863642 -95800711 + AluSg SINE Alu 1 305 -5 251 213 0 0 chr1 146863977 146864038 -95800315 + T-rich Low_complexity Low_complexity 1 61 0 5739 21 1 0 chr1 146864039 146864700 -95799653 - L1PA4 LINE L1 0 6155 5494 205 246 0 46 chr1 146868737 146868802 -95795551 + CT-rich Low_complexity Low_complexity 2 63 0 805 274 6 0 chr1 146869423 146869598 -95794755 + MER45A DNA AcHobo 1 176 -2 2169 93 3 7 chr1 146870263 146870563 -95793790 - AluY SINE Alu -12 299 1 500 244 273 10 chr1 146872198 146872403 -95791950 - MIR SINE MIR 0 262 4 * 679 322 130 16 chr1 146872403 146872925 -95791428 - L2 LINE L2 -8 3305 2735 814 92 53 0 chr1 146872934 146873065 -95791288 - MER41-int LTR ERV1 -1232 4714 4577 7556 28 12 0 chr1 146873089 146874258 -95790095 - L1PA4 LINE L1 -3 6152 4979 1220 226 60 22 chr1 146874309 146874677 -95789676 + L1MA10 LINE L1 5953 6334 0 611 179 9 0 chr1 146875851 146875963 -95788390 - MER70B LTR ERVL -11 567 455 2751 214 9 46 chr1 146877733 146878214 -95786139 - MER70-int LTR ERVL -1443 3580 3130 2559 120 0 8 chr1 146878214 146878581 -95785772 + THE1B LTR MaLR 1 364 0 2751 214 9 46 chr1 146878581 146878776 -95785577 - MER70-int LTR ERVL -1893 3130 2929 835 298 8 0 chr1 146878827 146879135 -95785218 - MER70-int LTR ERVL -1724 3806 2716 607 205 16 0 chr1 146879382 146879504 -95784849 - MER70-int LTR ERVL -2304 2719 2596 4385 226 36 10 chr1 146879504 146880517 -95783836 - MLT1A1-int LTR MaLR -695 1040 1 957 233 38 0 chr1 146880517 146880727 -95783626 - MLT1A1 LTR MaLR 0 365 148 979 212 141 7 chr1 146881009 146881292 -95783061 + MER5C DNA MER1_type 2 322 -2 543 240 23 0 chr1 146882063 146882192 -95782161 + FLAM_C SINE Alu 1 132 -1 524 282 6 0 chr1 146882994 146883157 -95781196 + L1MA4A LINE L1 30 193 -7016 4343 226 28 8 chr1 146883553 146884565 -95779788 + L1MA4A LINE L1 1463 2498 -4711 2549 124 3 3 chr1 146884565 146884929 -95779424 - THE1B LTR MaLR 0 364 1 4343 226 28 8 chr1 146884929 146884971 -95779382 + L1MA4A LINE L1 2498 2538 -4671 24 32 0 0 chr1 146884971 146885002 -95779351 + AT_rich Low_complexity Low_complexity 1 31 0 688 246 33 24 chr1 146885016 146885227 -95779126 + L1MA4A LINE L1 2524 2736 -4473 4883 99 97 111 chr1 146885237 146886821 -95777532 - pTR5 LTR ERV1 0 2438 743 11529 199 30 25 chr1 146886824 146891233 -95773120 + L1MA4A LINE L1 2743 7171 -194 443 223 75 11 chr1 146891292 146891480 -95772873 + L1MA4A LINE L1 2962 3161 -2985 * 2009 158 9 41 chr1 146891474 146891910 -95772443 + L1MA4A LINE L1 5338 5759 -544 391 136 0 0 chr1 146891908 146891974 -95772379 + L1MA4A LINE L1 6213 6278 -25 * 1910 255 77 20 chr1 146892688 146893638 -95770715 + L1ME1 LINE L1 2607 3610 -2536 1773 225 53 64 chr1 146893646 146894120 -95770233 + L1ME1 LINE L1 4987 5465 -701 1325 233 28 25 chr1 146894120 146894480 -95769873 - MLT1A1 LTR MaLR 0 365 5 1773 225 53 64 chr1 146894480 146895199 -95769154 + L1ME1 LINE L1 5465 6144 -22 22 0 0 0 chr1 146895449 146895471 -95768882 + AT_rich Low_complexity Low_complexity 1 22 0 811 303 59 43 chr1 146896039 146896481 -95767872 - MLT1J LTR MaLR -54 457 9 557 326 68 47 chr1 146896518 146896991 -95767362 + L1M4 LINE L1 3951 4433 -1713 6976 42 19 0 chr1 146897464 146898525 -95765828 - L1PA4 LINE L1 0 6155 5085 * 12891 32 14 1 chr1 146898524 146900865 -95763488 + L1PA4 LINE L1 3807 6152 -3 3990 179 76 17 chr1 146900917 146901921 -95762432 - Charlie1 DNA MER1_type -104 2657 1595 1231 171 61 0 chr1 146901938 146902183 -95762170 - MER2 DNA MER2_type -85 260 1 297 200 188 35 chr1 146902244 146902414 -95761939 + LTR40b LTR ERVL 1 196 -266 1436 213 40 45 chr1 146902414 146902964 -95761389 - MER67C LTR ERV1 0 514 1 694 258 83 20 chr1 146902964 146903213 -95761140 + LTR40b LTR ERVL 194 458 -4 1178 280 83 32 chr1 146903681 146904153 -95760200 - L2 LINE L2 0 3313 2818 273 196 0 0 chr1 146904153 146904204 -95760149 - L2 LINE L2 -656 2658 2608 520 346 47 13 chr1 146905259 146905557 -95758796 - HERVL LTR ERVL -1438 4216 3909 290 270 26 26 chr1 146905758 146905873 -95758480 - HERVL LTR ERVL -2056 3708 3594 2466 87 14 0 chr1 146906119 146906465 -95757888 - L1PB1 LINE L1 -2 6149 5799 26 64 0 0 chr1 146906622 146906669 -95757684 + AT_rich Low_complexity Low_complexity 1 47 0 36 23 0 0 chr1 146906712 146906755 -95757598 + AT_rich Low_complexity Low_complexity 1 43 0 1885 53 9 0 chr1 146906972 146907200 -95757153 + AluY SINE Alu 76 305 -6 219 139 0 0 chr1 146907200 146907236 -95757117 + (TA)n Simple_repeat Simple_repeat 1 36 0 371 154 0 0 chr1 146907583 146907648 -95756705 - L1MA6 LINE L1 -26 6274 6210 1953 138 0 0 chr1 146909019 146909310 -95755043 + AluSq SINE Alu 1 291 -22 21 0 0 0 chr1 146910604 146910625 -95753728 + AT_rich Low_complexity Low_complexity 1 21 0 578 278 134 10 chr1 146911999 146912208 -95752145 + MIR SINE MIR 2 236 -26 513 146 0 0 chr1 146912441 146912537 -95751816 - L1MA6 LINE L1 -1 6299 6204 219 311 82 0 chr1 146913479 146913540 -95750813 - MIR3 SINE MIR -133 75 10 27 0 0 0 chr1 146914428 146914455 -95749898 + AT_rich Low_complexity Low_complexity 1 27 0 237 163 0 0 chr1 146914568 146914617 -95749736 + (TG)n Simple_repeat Simple_repeat 1 49 0 1499 240 79 59 chr1 146916187 146916732 -95747621 + MER74A LTR ERVL 3 558 0 635 173 0 0 chr1 146916734 146916844 -95747509 + L1MC2 LINE L1 4690 4799 -1347 * 2058 202 61 12 chr1 146916843 146917337 -95747016 + L1MC2 LINE L1 5814 6331 -13 387 340 138 4 chr1 146917360 146917628 -95746725 + L1ME3A LINE L1 5853 6156 -14 872 338 55 52 chr1 146918079 146919193 -95745160 - HERVL LTR ERVL -3590 2064 975 194 0 0 37 chr1 146919193 146919220 -95745133 + (TTA)n Simple_repeat Simple_repeat 2 27 0 872 338 55 52 chr1 146919220 146919323 -95745030 - HERVL LTR ERVL -4679 975 874 1778 101 0 8 chr1 146919861 146920099 -95744254 + AluSg/x SINE Alu 66 301 -9 351 286 0 0 chr1 146920373 146920450 -95743903 - LTR33 LTR ERVL -419 102 26 343 351 57 41 chr1 146920564 146920809 -95743544 + MLT1I LTR MaLR 159 407 -2 329 190 177 38 chr1 146921079 146921237 -95743116 - L1M4 LINE L1 -3128 3018 2839 2929 60 0 0 chr1 146921238 146921607 -95742746 - L1PA7 LINE L1 0 6154 5786 340 237 52 41 chr1 146921640 146921737 -95742616 - L2 LINE L2 0 3313 3216 479 299 113 23 chr1 146921848 146922380 -95741973 + L1M4 LINE L1 3153 3732 -2414 2508 166 84 0 chr1 146922398 146922851 -95741502 + MER6 DNA MER2_type 189 679 -186 410 283 26 18 chr1 146923354 146923467 -95740886 + MIR SINE MIR 34 147 -115 351 306 89 30 chr1 146924651 146924777 -95739576 - L1ME4a LINE L1 -37 6084 5967 1182 226 128 56 chr1 146924777 146925299 -95739054 + MER68 LTR ERV1 1 560 -2 351 306 89 30 chr1 146925299 146925443 -95738910 - L1ME4a LINE L1 -154 5967 5798 396 335 86 42 chr1 146925521 146925858 -95738495 - L1ME4a LINE L1 -441 5680 5329 26 50 0 0 chr1 146925935 146925975 -95738378 + AT_rich Low_complexity Low_complexity 1 40 0 328 314 106 35 chr1 146926267 146926579 -95737774 - L1ME4a LINE L1 -1316 4830 4497 23 0 0 0 chr1 146927436 146927459 -95736894 + AT_rich Low_complexity Low_complexity 1 23 0 1517 159 8 30 chr1 146927459 146927723 -95736630 - AluJo SINE Alu -54 258 1 264 256 91 25 chr1 146928680 146928801 -95735552 + LTR33A LTR ERVL 385 513 -10 1259 196 22 0 chr1 146928955 146929185 -95735168 + L1PA16 LINE L1 5908 6142 -24 302 295 45 0 chr1 146930322 146930434 -95733919 + MIR SINE MIR 92 208 -54 1984 140 17 7 chr1 146931716 146932016 -95732337 - AluSx SINE Alu -9 303 1 204 330 55 33 chr1 146933774 146933865 -95730488 + L2 LINE L2 2647 2739 -575 362 328 141 6 chr1 146935522 146935699 -95728654 + MIR SINE MIR 49 249 -13 423 316 31 26 chr1 146936637 146936835 -95727518 - MIR SINE MIR -11 251 49 180 0 0 0 chr1 146936842 146936862 -95727491 + (TG)n Simple_repeat Simple_repeat 1 20 0 333 366 50 0 chr1 146937323 146937484 -95726869 - MIR3 SINE MIR -7 201 33 28 0 0 0 chr1 146937775 146937803 -95726550 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 146937875 146937903 -95726450 + AT_rich Low_complexity Low_complexity 1 28 0 31019 119 8 59 chr1 146939125 146945605 -95718748 - L1PA7 LINE L1 -3 6151 12 523 280 80 15 chr1 146946150 146946350 -95718003 + MLT1K LTR MaLR 374 586 -2 284 319 28 49 chr1 146947696 146947840 -95716513 - L2 LINE L2 -5 3308 3168 903 266 77 16 chr1 146947961 146948439 -95715914 - L1ME3A LINE L1 -9 6161 5611 563 288 73 21 chr1 146948457 146948648 -95715705 + MLT1H LTR MaLR 23 223 -326 796 161 25 6 chr1 146948859 146949020 -95715333 - L1MB2 LINE L1 -10 6161 5998 654 275 105 4 chr1 146949137 146949519 -95714834 - L1ME3A LINE L1 -578 5586 5167 390 138 0 11 chr1 146949505 146949587 -95714766 - L1PB4 LINE L1 -202 5953 5889 * 5131 176 23 14 chr1 146949818 146950941 -95713412 - L1MA9 LINE L1 -10 6302 5169 5457 193 37 23 chr1 146950942 146951297 -95713056 + L1 LINE L1 3957 4305 -1841 2559 136 13 96 chr1 146951297 146951840 -95712513 + L1PA16 LINE L1 5661 6164 -2 5457 193 37 23 chr1 146951840 146952706 -95711647 + L1 LINE L1 4305 5199 -947 2212 119 0 3 chr1 146952706 146953016 -95711337 + AluSq SINE Alu 5 313 0 5457 193 37 23 chr1 146953016 146953034 -95711319 + L1 LINE L1 5199 5215 -931 265 298 76 18 chr1 146953106 146953331 -95711022 - L1M4 LINE L1 -2019 4127 3890 1261 175 84 8 chr1 146953536 146953820 -95710533 - AluJb SINE Alu 0 304 1 290 361 111 9 chr1 146953995 146954103 -95710250 + L2 LINE L2 2955 3073 -199 513 225 25 25 chr1 146954317 146954437 -95709916 - FLAM_A SINE Alu -11 122 3 21 36 0 0 chr1 146954571 146954599 -95709754 + AT_rich Low_complexity Low_complexity 1 28 0 194 296 102 0 chr1 146955402 146955490 -95708863 - MIR SINE MIR 0 262 166 190 243 39 97 chr1 146955777 146955880 -95708473 + L2 LINE L2 3169 3265 -7 317 362 66 10 chr1 146956005 146956201 -95708152 - MIR SINE MIR -50 212 6 230 136 23 0 chr1 146956303 146956347 -95708006 + (TA)n Simple_repeat Simple_repeat 1 45 0 235 352 0 0 chr1 146956502 146956573 -95707780 - MIR3 SINE MIR -42 166 96 232 139 0 23 chr1 146956610 146956653 -95707700 + MER75 DNA T2_type 473 514 0 324 219 0 0 chr1 146956661 146956743 -95707610 + (TA)n Simple_repeat Simple_repeat 1 82 0 207 204 0 0 chr1 146957034 146957078 -95707275 + T-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 146958332 146958353 -95706000 + AT_rich Low_complexity Low_complexity 1 21 0 259 337 33 0 chr1 146958421 146958513 -95705840 - MIR3 SINE MIR -39 169 74 486 339 91 38 chr1 146958980 146959378 -95704975 - L3 LINE CR1 -23 1554 1136 425 256 119 30 chr1 146959664 146959832 -95704521 + MIR SINE MIR 8 190 -72 368 320 60 20 chr1 146959885 146960035 -95704318 - MIR3 SINE MIR -48 160 5 222 339 0 0 chr1 146961307 146961369 -95702984 - L2 LINE L2 -1 3312 3251 218 325 65 32 chr1 146961460 146961583 -95702770 + MER5A DNA MER1_type 63 189 0 932 285 83 15 chr1 146961783 146962682 -95701671 + L1ME1 LINE L1 1900 2812 -3403 465 271 57 19 chr1 146962710 146962920 -95701433 + L1ME1 LINE L1 4145 4362 -1853 7305 200 86 82 chr1 146962932 146965369 -95698984 + L1PB4 LINE L1 2482 5062 -1094 633 217 8 0 chr1 146965369 146965498 -95698855 + AluJb SINE Alu 2 131 -181 7305 200 86 82 chr1 146965498 146966220 -95698133 + L1PB4 LINE L1 5062 5780 -376 1857 203 11 5 chr1 146968375 146968754 -95695599 + L1PB4 LINE L1 5773 6153 -3 2077 249 84 16 chr1 146968790 146969602 -95694751 + L1ME1 LINE L1 4382 5248 -967 355 235 12 1 chr1 146969612 146969717 -95694636 + L1MB7 LINE L1 6072 6177 -1 * 2352 263 48 11 chr1 146969713 146970583 -95693770 + L1ME1 LINE L1 5244 6137 -98 328 291 101 19 chr1 146970597 146970755 -95693598 + L1ME2 LINE L1 5985 6155 -9 256 335 70 25 chr1 146970940 146971182 -95693171 + L1MC/D LINE L1 5385 5637 -484 23 0 0 0 chr1 146971235 146971258 -95693095 + AT_rich Low_complexity Low_complexity 1 23 0 854 330 129 24 chr1 146972175 146972754 -95691599 - ERVL LTR ERVL -530 5234 4595 341 365 52 13 chr1 146972762 146972995 -95691358 - L1M4 LINE L1 -1224 4922 4681 197 388 54 0 chr1 146973191 146973320 -95691033 + MER5A DNA MER1_type 54 189 0 2128 131 0 0 chr1 146974102 146974399 -95689954 + AluSx SINE Alu 1 297 -15 489 62 0 0 chr1 146974471 146974536 -95689817 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 21 0 0 0 chr1 146974815 146974836 -95689517 + AT_rich Low_complexity Low_complexity 1 21 0 1967 164 0 0 chr1 146976742 146977053 -95687300 - AluSx SINE Alu -1 311 1 274 295 156 16 chr1 146978629 146978751 -95685602 - MIR SINE MIR -21 241 103 264 122 0 0 chr1 146978963 146979004 -95685349 + (A)n Simple_repeat Simple_repeat 1 41 0 320 353 74 40 chr1 146979599 146979950 -95684403 - L2 LINE L2 -76 3237 2875 266 80 100 0 chr1 146979965 146980015 -95684338 - L1MA8 LINE L1 -5 6286 6232 * 2818 42 3 0 chr1 146980010 146980367 -95683986 - L1PA4 LINE L1 -921 5225 4868 7506 26 6 0 chr1 146980375 146981269 -95683084 + L1PA4 LINE L1 5254 6152 -3 5267 150 29 20 chr1 146981295 146981776 -95682577 - L1MA8 LINE L1 -47 6244 5769 581 47 0 59 chr1 146981776 146981861 -95682492 + MADE1 DNA Mariner 1 80 0 5267 150 29 20 chr1 146981861 146982516 -95681837 - L1MA8 LINE L1 -522 5769 5101 184 306 121 48 chr1 146982528 146982652 -95681701 + L2 LINE L2 3137 3269 -3 303 321 182 7 chr1 146982679 146982959 -95681394 + L2 LINE L2 2370 2698 -616 * 357 232 10 10 chr1 146982955 146983054 -95681299 + MIR SINE MIR 164 262 0 2343 96 0 0 chr1 146983454 146983766 -95680587 - AluSx SINE Alu 0 312 1 242 291 6 0 chr1 146985049 146985120 -95679233 - MIR SINE MIR -46 162 89 326 322 43 9 chr1 146985478 146985593 -95678760 + L2 LINE L2 3187 3305 -8 725 209 17 3 chr1 146985799 146986151 -95678202 + CT-rich Low_complexity Low_complexity 1 357 0 253 323 23 37 chr1 146986788 146987005 -95677348 + MER112 DNA MER1_type 41 254 -6 557 327 142 0 chr1 146987069 146987295 -95677058 - MIR SINE MIR 0 262 5 25 31 0 0 chr1 146987596 146987628 -95676725 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr1 146988065 146988094 -95676259 + AT_rich Low_complexity Low_complexity 1 29 0 35 45 0 15 chr1 146988344 146988370 -95675983 + AT_rich Low_complexity Low_complexity 1 26 -40 2411 78 0 3 chr1 146988370 146988678 -95675675 + AluY SINE Alu 1 307 -4 35 45 0 15 chr1 146988678 146988718 -95675635 + AT_rich Low_complexity Low_complexity 26 66 0 1297 111 25 1 chr1 146988869 146989140 -95675213 - L1P4 LINE L1 -695 5471 5195 * 5322 228 37 8 chr1 146989133 146990470 -95673883 + L1P4 LINE L1 3826 5202 -944 744 273 64 3 chr1 146991304 146991630 -95672723 - L1M4 LINE L1 -1462 4684 4339 1009 246 95 40 chr1 146991630 146991976 -95672377 + MLT1D LTR MaLR 1 365 -140 21 57 0 0 chr1 146995055 146995090 -95669263 + AT_rich Low_complexity Low_complexity 1 35 0 782 312 75 32 chr1 146995679 146996040 -95668313 - MLT1G1 LTR MaLR -33 562 145 273 246 22 119 chr1 146996040 146996174 -95668179 - MLT1G1-int LTR MaLR -222 1149 1029 1708 149 25 6 chr1 146996865 146997188 -95667165 - L1MA5A LINE L1 -5 6292 5964 225 306 0 14 chr1 146997484 146997556 -95666797 - MLT1G1-int LTR MaLR -1300 71 1 1125 318 71 22 chr1 146997556 146998019 -95666334 - MLT1G1 LTR MaLR 0 595 110 1727 92 24 4 chr1 146998105 146998356 -95665997 - L1PA10 LINE L1 -6 6162 5907 21 0 0 0 chr1 146999330 146999351 -95665002 + AT_rich Low_complexity Low_complexity 1 21 0 348 43 0 0 chr1 147000081 147000127 -95664226 + (TC)n Simple_repeat Simple_repeat 2 47 0 216 269 0 0 chr1 147000368 147000420 -95663933 + T-rich Low_complexity Low_complexity 3 54 0 2198 177 16 3 chr1 147002634 147003019 -95661334 - MER44D DNA MER2_type -4 601 157 192 337 79 10 chr1 147004349 147004450 -95659903 + MIR SINE MIR 73 180 -82 185 234 64 64 chr1 147004586 147004680 -95659673 - L3 LINE CR1 -441 1136 1043 558 324 229 5 chr1 147005173 147005596 -95658757 - L3 LINE CR1 -4 1573 1056 203 152 0 0 chr1 147005756 147005789 -95658564 + (CATTT)n Simple_repeat Simple_repeat 3 35 0 27 49 0 0 chr1 147006105 147006146 -95658207 + AT_rich Low_complexity Low_complexity 1 41 0 479 193 101 0 chr1 147006641 147006750 -95657603 - MER5C DNA MER1_type 0 324 205 198 420 0 0 chr1 147006872 147006960 -95657393 - MER5C DNA MER1_type -236 88 1 633 286 88 8 chr1 147007268 147007530 -95656823 + HAL1 LINE L1 749 1031 -1476 251 248 168 10 chr1 147007550 147007651 -95656702 - L1ME3A LINE L1 -24 6146 6030 1131 298 62 12 chr1 147008076 147008492 -95655861 - LTR16A LTR ERVL 0 450 14 2116 251 75 26 chr1 147008974 147010068 -95654285 - L1ME2 LINE L1 -2 6162 5019 596 190 17 0 chr1 147010115 147010231 -95654122 - L1ME1 LINE L1 -7 6159 6042 22 0 0 0 chr1 147010373 147010395 -95653958 + AT_rich Low_complexity Low_complexity 1 22 0 435 254 41 2 chr1 147010552 147010694 -95653659 + L1M4 LINE L1 4736 4883 -1263 599 227 131 27 chr1 147010721 147010981 -95653372 - L1ME1 LINE L1 -108 6058 5772 * 1383 264 91 12 chr1 147010975 147011806 -95652547 - L1ME1 LINE L1 -594 5570 4721 461 225 104 29 chr1 147012030 147012203 -95652150 - LTR41 LTR ERVL -569 204 19 286 118 39 0 chr1 147012482 147012533 -95651820 - L1MB1 LINE L1 -17 6172 6120 2122 167 83 0 chr1 147012554 147012949 -95651404 - MSTA LTR MaLR 0 428 1 8134 187 29 31 chr1 147012955 147013996 -95650357 - MSTA-int LTR MaLR -6 1645 608 2337 87 10 13 chr1 147013996 147014307 -95650046 - AluY SINE Alu -1 310 1 8134 187 29 31 chr1 147014307 147014912 -95649441 - MSTA-int LTR MaLR -1043 608 3 2274 152 56 22 chr1 147014914 147015328 -95649025 - MSTA LTR MaLR 0 428 1 713 177 28 7 chr1 147015331 147015472 -95648881 - L1MB1 LINE L1 -85 6083 5940 871 198 11 0 chr1 147015481 147015658 -95648695 + L1M3 LINE L1 5627 5805 -529 792 229 37 37 chr1 147015658 147015902 -95648451 + MLT1A1 LTR MaLR 122 365 0 1965 226 171 26 chr1 147015902 147016376 -95647977 - L1 LINE L1 -2807 4758 4354 2718 153 0 14 chr1 147016376 147016808 -95647545 - MSTA LTR MaLR 0 428 3 1965 226 171 26 chr1 147016808 147017146 -95647207 - L1 LINE L1 -3211 4354 3828 * 10290 206 40 5 chr1 147017141 147019815 -95644538 - L1 LINE L1 -4080 3485 22 1198 263 63 15 chr1 147019821 147020558 -95643795 - L1M4 LINE L1 -3727 3838 3074 391 253 0 0 chr1 147020558 147020636 -95643717 + Tigger5 DNA MER2_type 1 78 -2245 399 227 0 0 chr1 147020636 147020711 -95643642 - Tigger5 DNA MER2_type -3 2320 2246 1525 102 5 0 chr1 147020767 147020982 -95643371 - L1PA13 LINE L1 -128 6035 5820 303 244 12 23 chr1 147021159 147021245 -95643108 - L2 LINE L2 -2 3311 3227 1967 153 3 0 chr1 147022984 147023285 -95641068 - AluSq SINE Alu -7 306 5 25 0 0 0 chr1 147024662 147024687 -95639666 + AT_rich Low_complexity Low_complexity 1 25 0 7435 35 0 0 chr1 147024795 147026165 -95638188 + L1PA4 LINE L1 4786 6155 0 400 355 155 41 chr1 147028426 147029224 -95635129 - L3 LINE CR1 -1 1576 688 2055 107 0 0 chr1 147029572 147029852 -95634501 + AluY SINE Alu 1 280 -31 237 33 0 0 chr1 147029855 147029885 -95634468 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1996 95 0 0 chr1 147030562 147030825 -95633528 - AluY SINE Alu -8 303 41 354 322 14 0 chr1 147031568 147031714 -95632639 + L1MEc LINE L1 46 193 -6203 363 307 50 7 chr1 147031847 147031987 -95632366 + MER90 LTR ERV1 4 149 -426 21 0 0 0 chr1 147032024 147032045 -95632308 + AT_rich Low_complexity Low_complexity 1 21 0 183 204 0 0 chr1 147032100 147032144 -95632209 + (TA)n Simple_repeat Simple_repeat 1 44 0 349 322 65 29 chr1 147032278 147032523 -95631830 + L1MEc LINE L1 299 552 -5844 261 273 64 9 chr1 147032524 147032634 -95631719 + L1MEc LINE L1 1020 1135 -5261 1896 323 85 13 chr1 147032907 147034174 -95630179 + L1M3a LINE L1 1538 2581 -4905 1132 271 93 58 chr1 147034168 147034609 -95629744 + L1M3a LINE L1 2533 2957 -4608 * 2064 89 0 26 chr1 147034609 147034922 -95629431 + L1PA8 LINE L1 5868 6172 0 1132 271 93 58 chr1 147034922 147034974 -95629379 + L1M3a LINE L1 2957 3006 -4559 740 188 0 0 chr1 147034974 147035102 -95629251 + FLAM_C SINE Alu 2 129 -4 1132 271 93 58 chr1 147035102 147035696 -95628657 + L1M3a LINE L1 3006 3630 -3935 210 191 0 0 chr1 147036478 147036525 -95627828 + GA-rich Low_complexity Low_complexity 1 47 0 222 233 17 0 chr1 147036562 147036622 -95627731 + GA-rich Low_complexity Low_complexity 1 61 0 2616 263 19 3 chr1 147038591 147039336 -95625017 + L1M3a LINE L1 3621 4377 -3188 8256 226 43 19 chr1 147039336 147041293 -95623060 + L1PA15-16 LINE L1 1326 3235 -3614 2412 75 0 0 chr1 147041293 147041600 -95622753 + AluY SINE Alu 1 307 -4 8256 226 43 19 chr1 147041600 147042458 -95621895 + L1PA15-16 LINE L1 3235 4071 -2778 204 40 0 0 chr1 147042458 147042483 -95621870 + (CCA)n Simple_repeat Simple_repeat 1 25 0 8256 226 43 19 chr1 147042483 147043292 -95621061 + L1PA15-16 LINE L1 4071 5019 -1830 3236 188 21 9 chr1 147043279 147043364 -95620989 - L1P4 LINE L1 -494 5671 5588 * 2367 88 3 0 chr1 147043364 147043669 -95620684 + AluSp SINE Alu 1 306 -7 3236 188 21 9 chr1 147043669 147044615 -95619738 - L1P4 LINE L1 -577 5588 4631 4087 96 3 17 chr1 147044626 147045222 -95619131 - L1PA13 LINE L1 -15 6148 5561 794 303 28 3 chr1 147045229 147045582 -95618771 + L1ME1 LINE L1 1582 1943 -4453 26 0 0 0 chr1 147045603 147045629 -95618724 + AT_rich Low_complexity Low_complexity 1 26 0 503 287 48 21 chr1 147045667 147045855 -95618498 - MER3 DNA MER1_type 0 209 17 2366 237 80 40 chr1 147046031 147046671 -95617682 + L1ME1 LINE L1 5108 5802 -433 2920 125 17 68 chr1 147046671 147047248 -95617105 + LTR14 LTR ERVK 1 548 0 2366 237 80 40 chr1 147047248 147047683 -95616670 + L1ME1 LINE L1 5802 6218 -17 340 301 109 22 chr1 147048180 147048363 -95615990 - L2 LINE L2 -2 3311 3113 222 322 259 0 chr1 147048389 147048532 -95615821 - L2 LINE L2 -248 3065 2886 1539 86 5 0 chr1 147048656 147048876 -95615477 + L1MA1 LINE L1 6082 6302 0 2648 216 72 25 chr1 147049793 147050475 -95613878 - L1MB7 LINE L1 -54 6628 5915 * 7848 238 76 14 chr1 147050472 147051060 -95613293 - L1MB7 LINE L1 -1280 5364 4814 240 86 0 0 chr1 147051060 147051095 -95613258 + (TG)n Simple_repeat Simple_repeat 2 36 0 7848 238 76 14 chr1 147051095 147051332 -95613021 - L1MB7 LINE L1 -1830 4814 4593 321 26 0 0 chr1 147051332 147051370 -95612983 + (TG)n Simple_repeat Simple_repeat 2 39 0 7848 238 76 14 chr1 147051370 147053040 -95611313 - L1MB7 LINE L1 -2051 4593 2712 287 298 24 0 chr1 147053040 147053124 -95611229 - LTR53 LTR ERVL 0 519 434 530 293 66 37 chr1 147053127 147053537 -95610816 - L1MB7 LINE L1 -3950 2696 2275 1888 199 30 93 chr1 147053545 147053772 -95610581 - L1MB7 LINE L1 -4842 1700 1460 2297 136 69 12 chr1 147053772 147054177 -95610176 - MSTA LTR MaLR 0 428 1 1888 199 30 93 chr1 147054177 147054407 -95609946 - L1MB7 LINE L1 -5082 1460 1217 276 30 0 0 chr1 147054407 147054440 -95609913 + (TA)n Simple_repeat Simple_repeat 1 33 0 2099 129 7 0 chr1 147054440 147054735 -95609618 - AluSx SINE Alu -15 297 1 1888 199 30 93 chr1 147054735 147054944 -95609409 - L1MB7 LINE L1 -5323 1219 1074 461 200 11 0 chr1 147054943 147055033 -95609320 - L1MB7 LINE L1 -6438 104 14 * 1224 99 36 16 chr1 147055046 147055238 -95609115 - L1PA10 LINE L1 -4 6164 5969 763 141 8 0 chr1 147055435 147055556 -95608797 - AluJb SINE Alu -13 299 178 1095 192 5 0 chr1 147055565 147055758 -95608595 - AluJo SINE Alu -107 205 12 303 242 125 92 chr1 147056025 147056265 -95608088 - L1ME4a LINE L1 -9 6112 5865 4858 107 7 4 chr1 147056636 147057353 -95607000 - L1PA13 LINE L1 -2 6161 5443 253 236 0 0 chr1 147057354 147057409 -95606944 + L1M2 LINE L1 5433 5487 -825 * 1376 38 47 0 chr1 147057397 147057612 -95606741 + L1PA4 LINE L1 5951 6172 0 1466 113 19 3 chr1 147057615 147057930 -95606423 - L1P4 LINE L1 -722 5441 5121 1041 193 72 68 chr1 147057969 147058422 -95605931 - MLT1C LTR MaLR -1 466 1 23 68 0 0 chr1 147058476 147058520 -95605833 + AT_rich Low_complexity Low_complexity 1 44 0 593 198 0 0 chr1 147058656 147058762 -95605591 - FLAM_A SINE Alu -32 110 5 219 69 0 0 chr1 147059089 147059118 -95605235 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 234 313 16 chr1 147060433 147060497 -95603856 - MIR SINE MIR -103 105 23 207 330 72 10 chr1 147060879 147060976 -95603377 + MIR SINE MIR 49 151 -111 213 310 0 70 chr1 147063079 147063150 -95601203 - MIR SINE MIR -88 120 55 237 234 72 43 chr1 147063482 147063584 -95600769 - MIR3 SINE MIR -49 159 57 246 32 0 0 chr1 147063848 147063879 -95600474 + (CA)n Simple_repeat Simple_repeat 2 32 0 354 318 133 46 chr1 147063912 147064280 -95600073 - L3 LINE CR1 -2 1575 1176 306 132 0 0 chr1 147064313 147064366 -95599987 + (TA)n Simple_repeat Simple_repeat 1 53 0 1324 129 0 57 chr1 147065431 147065679 -95598674 + L1MA5A LINE L1 6064 6297 0 2293 91 0 7 chr1 147067115 147067411 -95596942 - AluY SINE Alu -17 294 1 275 271 0 0 chr1 147068009 147068068 -95596285 - L2 LINE L2 -3 3310 3252 654 323 30 0 chr1 147068488 147068689 -95595664 + MIR SINE MIR 22 228 -34 21 0 0 0 chr1 147069027 147069048 -95595305 + AT_rich Low_complexity Low_complexity 1 21 0 234 240 40 0 chr1 147069103 147069153 -95595200 + L2 LINE L2 3262 3313 0 612 146 0 0 chr1 147069885 147069981 -95594372 + L1MA1 LINE L1 6195 6290 -12 23 0 0 0 chr1 147070008 147070031 -95594322 + AT_rich Low_complexity Low_complexity 1 23 0 270 194 0 0 chr1 147070134 147070196 -95594157 + A-rich Low_complexity Low_complexity 4 65 0 2539 85 6 20 chr1 147070314 147070604 -95593749 - HSMAR1 DNA Mariner -666 621 335 2644 30 3 0 chr1 147070604 147070907 -95593446 - AluY SINE Alu -7 304 1 2539 85 6 20 chr1 147070907 147070970 -95593383 - HSMAR1 DNA Mariner -952 335 273 * 4548 110 33 0 chr1 147070965 147071602 -95592751 + HSMAR1 DNA Mariner 629 1286 -1 271 346 59 7 chr1 147071602 147071736 -95592617 - MLT1L LTR MaLR -128 487 347 331 276 105 77 chr1 147071704 147071885 -95592468 - MLT1J LTR MaLR -214 297 112 447 285 70 27 chr1 147073153 147073339 -95591014 - MIR SINE MIR -59 203 10 325 208 56 0 chr1 147074515 147074587 -95589766 - MER5A DNA MER1_type -113 76 1 1610 226 35 61 chr1 147076409 147076901 -95587452 + MLT1D LTR MaLR 27 505 0 636 202 0 8 chr1 147077164 147077288 -95587065 - FLAM_A SINE Alu -2 140 18 1454 230 121 58 chr1 147077289 147078158 -95586195 - Charlie2 DNA MER1_type -83 2779 1856 327 285 116 58 chr1 147078247 147078419 -95585934 - Charlie2 DNA MER1_type -2675 187 6 247 209 139 47 chr1 147078640 147078726 -95585627 + L2 LINE L2 3216 3309 -4 7678 17 1 0 chr1 147078927 147079924 -95584429 + L1PA3 LINE L1 5171 6168 0 429 281 152 28 chr1 147081741 147081919 -95582434 - MIR SINE MIR -26 236 37 193 295 103 13 chr1 147082487 147082565 -95581788 + L3 LINE CR1 1145 1229 -348 280 239 26 80 chr1 147083537 147083650 -95580703 + L3 LINE CR1 1404 1510 -67 218 349 36 0 chr1 147084268 147084351 -95580002 - MIR SINE MIR -12 250 165 620 301 103 60 chr1 147084388 147084836 -95579517 - MLT1J LTR MaLR -44 467 1 210 356 40 0 chr1 147084840 147084941 -95579412 - MIR SINE MIR -109 153 49 1342 217 20 26 chr1 147084959 147085263 -95579090 - L1MD1 LINE L1 -16 6226 5925 207 0 0 0 chr1 147085263 147085286 -95579067 + (CA)n Simple_repeat Simple_repeat 2 24 0 281 225 0 9 chr1 147085363 147085474 -95578879 + (TA)n Simple_repeat Simple_repeat 2 111 0 291 200 9 73 chr1 147085484 147085558 -95578795 - L1M4b LINE L1 -5179 1680 1607 586 250 51 6 chr1 147085558 147085734 -95578619 - L1MD1 LINE L1 -331 5911 767 249 33 0 0 chr1 147085734 147085764 -95578589 + (TG)n Simple_repeat Simple_repeat 1 30 0 1960 124 4 0 chr1 147085768 147086043 -95578310 - AluSp SINE Alu -37 276 1 2483 250 61 31 chr1 147086065 147087367 -95576986 - L1M4c LINE L1 -4741 2218 895 186 388 33 25 chr1 147087520 147087641 -95576712 + L2 LINE L2 3175 3296 -17 985 321 35 25 chr1 147087919 147088240 -95576113 - L1ME3A LINE L1 -317 5853 5522 2445 73 3 0 chr1 147088240 147088540 -95575813 + AluSx SINE Alu 1 301 -11 985 321 35 25 chr1 147088540 147088806 -95575547 - L1ME3A LINE L1 -648 5522 5260 1719 200 55 0 chr1 147088817 147089147 -95575206 + MER7A DNA MER2_type 1 346 0 338 341 54 58 chr1 147089216 147089421 -95574932 - L1ME3A LINE L1 -2 6168 5965 263 265 144 45 chr1 147089464 147089819 -95574534 - L1ME3A LINE L1 -937 5209 4820 1973 109 26 0 chr1 147090348 147090656 -95573697 - AluSq SINE Alu 0 327 13 211 128 26 0 chr1 147094460 147094499 -95569854 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 188 0 0 chr1 147094622 147094670 -95569683 + (CA)n Simple_repeat Simple_repeat 2 49 0 215 370 101 0 chr1 147094940 147095059 -95569294 + MIR3 SINE MIR 78 208 0 1124 210 15 73 chr1 147095483 147095755 -95568598 + MER31B LTR ERV1 1 256 -210 762 166 6 46 chr1 147146379 147146554 -95517799 + L1MA7 LINE L1 6121 6288 -3 629 212 8 0 chr1 147146801 147146919 -95517434 + MER58A DNA MER1_type 1 119 0 988 208 76 61 chr1 147147594 147147910 -95516443 + LTR56 LTR ERV1 11 303 -134 258 32 0 0 chr1 147147910 147147941 -95516412 + (CA)n Simple_repeat Simple_repeat 2 32 0 988 208 76 61 chr1 147147941 147148079 -95516274 + LTR56 LTR ERV1 303 437 0 24 0 0 0 chr1 147148443 147148467 -95515886 + AT_rich Low_complexity Low_complexity 1 24 0 549 327 142 0 chr1 147149802 147150028 -95514325 - MIR SINE MIR 0 262 5 25 31 0 0 chr1 147150329 147150361 -95513992 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr1 147150798 147150827 -95513526 + AT_rich Low_complexity Low_complexity 1 29 0 35 45 0 15 chr1 147151077 147151103 -95513250 + AT_rich Low_complexity Low_complexity 1 26 -40 2448 78 0 3 chr1 147151103 147151411 -95512942 + AluY SINE Alu 1 307 -4 35 45 0 15 chr1 147151411 147151451 -95512902 + AT_rich Low_complexity Low_complexity 26 66 0 1290 111 25 1 chr1 147151602 147151873 -95512480 - L1P4 LINE L1 -695 5471 5195 * 5246 228 37 8 chr1 147151866 147153203 -95511150 + L1P4 LINE L1 3826 5202 -944 707 273 64 3 chr1 147154037 147154363 -95509990 - L1M4 LINE L1 -1462 4684 4339 1008 246 95 40 chr1 147154363 147154709 -95509644 + MLT1D LTR MaLR 1 365 -140 21 57 0 0 chr1 147157788 147157823 -95506530 + AT_rich Low_complexity Low_complexity 1 35 0 779 309 79 30 chr1 147158412 147158742 -95505611 - MLT1G1 LTR MaLR -33 562 217 282 252 22 115 chr1 147158768 147158907 -95505446 - MLT1-int LTR MaLR -217 1154 1029 1702 149 25 6 chr1 147159598 147159921 -95504432 - L1MA5A LINE L1 -5 6292 5964 1124 318 71 22 chr1 147160289 147160752 -95503601 - MLT1G1 LTR MaLR 0 595 110 1743 92 24 4 chr1 147160838 147161089 -95503264 - L1PA10 LINE L1 -6 6162 5907 21 0 0 0 chr1 147162063 147162084 -95502269 + AT_rich Low_complexity Low_complexity 1 21 0 348 43 0 0 chr1 147162814 147162860 -95501493 + (TC)n Simple_repeat Simple_repeat 2 47 0 216 269 0 0 chr1 147163101 147163153 -95501200 + T-rich Low_complexity Low_complexity 3 54 0 2187 177 16 3 chr1 147165367 147165752 -95498601 - MER44D DNA MER2_type -4 601 157 194 337 79 10 chr1 147167082 147167183 -95497170 + MIR SINE MIR 73 180 -82 202 224 59 71 chr1 147167319 147167404 -95496949 - L3 LINE CR1 -441 1136 1053 554 324 229 5 chr1 147167906 147168329 -95496024 - L3 LINE CR1 -4 1573 1056 203 152 0 0 chr1 147168489 147168522 -95495831 + (CATTT)n Simple_repeat Simple_repeat 3 35 0 27 49 0 0 chr1 147168838 147168879 -95495474 + AT_rich Low_complexity Low_complexity 1 41 0 474 193 101 0 chr1 147169374 147169483 -95494870 - MER5C DNA MER1_type 0 324 205 200 420 0 0 chr1 147169605 147169693 -95494660 - MER5C DNA MER1_type -236 88 1 610 286 88 8 chr1 147170001 147170263 -95494090 + HAL1 LINE L1 749 1031 -1476 242 248 168 10 chr1 147170283 147170384 -95493969 - L1ME3A LINE L1 -24 6146 6030 1139 298 62 12 chr1 147170809 147171225 -95493128 - LTR16A LTR ERVL 0 450 14 2082 243 61 30 chr1 147171707 147172480 -95491873 - L1ME2 LINE L1 -2 6162 5366 600 277 29 18 chr1 147172527 147172801 -95491552 - L1ME2 LINE L1 -851 5295 5019 587 190 17 0 chr1 147172848 147172964 -95491389 - L1ME1 LINE L1 -7 6159 6042 22 0 0 0 chr1 147173106 147173128 -95491225 + AT_rich Low_complexity Low_complexity 1 22 0 423 254 41 2 chr1 147173285 147173427 -95490926 + L1M4 LINE L1 4736 4883 -1263 588 227 131 27 chr1 147173454 147173714 -95490639 - L1ME1 LINE L1 -108 6058 5772 * 1317 263 91 12 chr1 147173708 147174539 -95489814 - L1ME1 LINE L1 -594 5570 4721 460 225 104 29 chr1 147174763 147174936 -95489417 - LTR41 LTR ERVL -569 204 19 283 118 39 0 chr1 147175215 147175266 -95489087 - L1MB1 LINE L1 -17 6172 6120 2139 167 83 0 chr1 147175287 147175682 -95488671 - MSTA LTR MaLR 0 428 1 8185 187 29 31 chr1 147175688 147176729 -95487624 - MSTA-int LTR MaLR -6 1645 608 2369 87 10 13 chr1 147176729 147177040 -95487313 - AluY SINE Alu -1 310 1 8185 187 29 31 chr1 147177040 147177645 -95486708 - MSTA-int LTR MaLR -1043 608 3 2293 152 56 22 chr1 147177647 147178061 -95486292 - MSTA LTR MaLR 0 428 1 711 177 28 7 chr1 147178064 147178205 -95486148 - L1MB1 LINE L1 -85 6083 5940 853 198 11 0 chr1 147178214 147178391 -95485962 + L1M3 LINE L1 5627 5805 -529 784 229 37 37 chr1 147178391 147178635 -95485718 + MLT1A1 LTR MaLR 122 365 0 1887 225 172 26 chr1 147178640 147179109 -95485244 - L1 LINE L1 -2812 4753 4354 2733 153 0 14 chr1 147179109 147179541 -95484812 - MSTA LTR MaLR 0 428 3 1887 225 172 26 chr1 147179541 147179879 -95484474 - L1 LINE L1 -3211 4354 3828 * 10237 206 40 5 chr1 147179874 147182548 -95481805 - L1 LINE L1 -4080 3485 22 1153 262 63 15 chr1 147182556 147183291 -95481062 - L1M4 LINE L1 -3729 3836 3074 387 253 0 0 chr1 147183291 147183369 -95480984 + Tigger5 DNA MER2_type 1 78 -2245 394 227 0 0 chr1 147183369 147183444 -95480909 - Tigger5 DNA MER2_type -3 2320 2246 1534 102 5 0 chr1 147183500 147183715 -95480638 - L1PA13 LINE L1 -128 6035 5820 296 244 12 23 chr1 147183892 147183978 -95480375 - L2 LINE L2 -2 3311 3227 1996 153 3 0 chr1 147185717 147186018 -95478335 - AluSq SINE Alu -7 306 5 25 0 0 0 chr1 147187395 147187420 -95476933 + AT_rich Low_complexity Low_complexity 1 25 0 7462 35 0 0 chr1 147187528 147188898 -95475455 + L1PA4 LINE L1 4786 6155 0 368 355 155 41 chr1 147191159 147191957 -95472396 - L3 LINE CR1 -1 1576 688 2093 107 0 0 chr1 147192305 147192585 -95471768 + AluY SINE Alu 1 280 -31 237 33 0 0 chr1 147192588 147192618 -95471735 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2024 95 0 0 chr1 147193295 147193558 -95470795 - AluY SINE Alu -8 303 41 343 322 14 0 chr1 147194301 147194447 -95469906 + L1MEc LINE L1 46 193 -6203 356 307 50 7 chr1 147194580 147194720 -95469633 + MER90 LTR ERV1 4 149 -426 21 0 0 0 chr1 147194757 147194778 -95469575 + AT_rich Low_complexity Low_complexity 1 21 0 183 204 0 0 chr1 147194833 147194877 -95469476 + (TA)n Simple_repeat Simple_repeat 1 44 0 348 322 65 29 chr1 147195011 147195256 -95469097 + L1MEc LINE L1 299 552 -5844 251 273 64 9 chr1 147195257 147195367 -95468986 + L1MEc LINE L1 1020 1135 -5261 1889 317 87 15 chr1 147195640 147196907 -95467446 + L1M3a LINE L1 1538 2581 -4905 1042 271 93 58 chr1 147196901 147197342 -95467011 + L1M3a LINE L1 2533 2957 -4608 * 2080 89 0 26 chr1 147197342 147197655 -95466698 + L1PA8 LINE L1 5868 6172 0 1042 271 93 58 chr1 147197655 147197707 -95466646 + L1M3a LINE L1 2957 3006 -4559 751 188 0 0 chr1 147197707 147197835 -95466518 + FLAM_C SINE Alu 2 129 -4 1042 271 93 58 chr1 147197835 147198429 -95465924 + L1M3a LINE L1 3006 3630 -3935 210 191 0 0 chr1 147199211 147199258 -95465095 + GA-rich Low_complexity Low_complexity 1 47 0 222 233 17 0 chr1 147199295 147199355 -95464998 + GA-rich Low_complexity Low_complexity 1 61 0 2559 263 19 3 chr1 147201324 147202069 -95462284 + L1M3a LINE L1 3621 4377 -3188 8120 227 43 19 chr1 147202069 147204026 -95460327 + L1PA15-16 LINE L1 1326 3235 -3614 2451 75 0 0 chr1 147204026 147204333 -95460020 + AluY SINE Alu 1 307 -4 8120 227 43 19 chr1 147204333 147205191 -95459162 + L1PA15-16 LINE L1 3235 4071 -2778 204 40 0 0 chr1 147205191 147205216 -95459137 + (CCA)n Simple_repeat Simple_repeat 1 25 0 8120 227 43 19 chr1 147205216 147206025 -95458328 + L1PA15-16 LINE L1 4071 5019 -1830 3205 190 20 8 chr1 147206012 147206097 -95458256 - L1P4 LINE L1 -494 5671 5588 * 2399 88 3 0 chr1 147206097 147206402 -95457951 + AluSp SINE Alu 1 306 -7 3205 190 20 8 chr1 147206402 147207348 -95457005 - L1P4 LINE L1 -577 5588 4631 4094 96 3 17 chr1 147207359 147207955 -95456398 - L1PA13 LINE L1 -15 6148 5561 754 303 28 3 chr1 147207962 147208315 -95456038 + L1ME1 LINE L1 1582 1943 -4453 26 0 0 0 chr1 147208336 147208362 -95455991 + AT_rich Low_complexity Low_complexity 1 26 0 487 287 48 21 chr1 147208400 147208588 -95455765 - MER3 DNA MER1_type 0 209 17 2313 237 80 40 chr1 147208764 147209404 -95454949 + L1ME1 LINE L1 5108 5802 -433 2960 125 17 68 chr1 147209404 147209981 -95454372 + LTR14 LTR ERVK 1 548 0 2313 237 80 40 chr1 147209981 147210416 -95453937 + L1ME1 LINE L1 5802 6218 -17 330 301 109 22 chr1 147210913 147211096 -95453257 - L2 LINE L2 -2 3311 3113 227 322 259 0 chr1 147211122 147211265 -95453088 - L2 LINE L2 -248 3065 2886 1532 86 5 0 chr1 147211389 147211609 -95452744 + L1MA1 LINE L1 6082 6302 0 2604 216 72 25 chr1 147212526 147213208 -95451145 - L1MB7 LINE L1 -54 6628 5915 * 7629 238 76 14 chr1 147213205 147213793 -95450560 - L1MB7 LINE L1 -1280 5364 4814 240 86 0 0 chr1 147213793 147213828 -95450525 + (TG)n Simple_repeat Simple_repeat 2 36 0 7629 238 76 14 chr1 147213828 147214065 -95450288 - L1MB7 LINE L1 -1830 4814 4593 321 26 0 0 chr1 147214065 147214103 -95450250 + (TG)n Simple_repeat Simple_repeat 2 39 0 7629 238 76 14 chr1 147214103 147215773 -95448580 - L1MB7 LINE L1 -2051 4593 2712 283 298 24 0 chr1 147215773 147215857 -95448496 - LTR53 LTR ERVL 0 519 434 488 293 66 37 chr1 147215860 147216270 -95448083 - L1MB7 LINE L1 -3950 2696 2275 1839 197 30 93 chr1 147216278 147216505 -95447848 - L1MB7 LINE L1 -4842 1700 1460 2316 136 69 12 chr1 147216505 147216910 -95447443 - MSTA LTR MaLR 0 428 1 1839 197 30 93 chr1 147216910 147217140 -95447213 - L1MB7 LINE L1 -5082 1460 1217 276 30 0 0 chr1 147217140 147217173 -95447180 + (TA)n Simple_repeat Simple_repeat 1 33 0 2129 129 7 0 chr1 147217173 147217468 -95446885 - AluSx SINE Alu -15 297 1 1839 197 30 93 chr1 147217468 147217677 -95446676 - L1MB7 LINE L1 -5323 1219 1074 454 193 11 0 chr1 147217676 147217764 -95446589 - L1MB7 LINE L1 -6438 104 16 * 1233 99 36 16 chr1 147217779 147217971 -95446382 - L1PA10 LINE L1 -4 6164 5969 774 141 8 0 chr1 147218168 147218289 -95446064 - AluJb SINE Alu -13 299 178 1114 192 5 0 chr1 147218298 147218491 -95445862 - AluJo SINE Alu -107 205 12 302 242 125 92 chr1 147218758 147218998 -95445355 - L1ME4a LINE L1 -9 6112 5865 4858 107 7 4 chr1 147219369 147220086 -95444267 - L1PA13 LINE L1 -2 6161 5443 249 182 0 0 chr1 147220087 147220131 -95444222 + L1PA13 LINE L1 5433 5476 -815 * 1377 35 40 0 chr1 147220130 147220345 -95444008 + L1PA4 LINE L1 5951 6172 0 1466 113 19 3 chr1 147220348 147220663 -95443690 - L1P4 LINE L1 -722 5441 5121 1041 193 72 68 chr1 147220702 147221155 -95443198 - MLT1C LTR MaLR -1 466 1 23 68 0 0 chr1 147221209 147221253 -95443100 + AT_rich Low_complexity Low_complexity 1 44 0 593 198 0 0 chr1 147221389 147221495 -95442858 - FLAM_A SINE Alu -32 110 5 219 69 0 0 chr1 147221822 147221851 -95442502 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 234 313 16 chr1 147223166 147223230 -95441123 - MIR SINE MIR -103 105 23 207 330 72 10 chr1 147223612 147223709 -95440644 + MIR SINE MIR 49 151 -111 213 310 0 70 chr1 147225812 147225883 -95438470 - MIR SINE MIR -88 120 55 237 234 72 43 chr1 147226215 147226317 -95438036 - MIR3 SINE MIR -49 159 57 246 32 0 0 chr1 147226581 147226612 -95437741 + (CA)n Simple_repeat Simple_repeat 2 32 0 354 318 133 46 chr1 147226645 147227013 -95437340 - L3 LINE CR1 -2 1575 1176 306 132 0 0 chr1 147227046 147227099 -95437254 + (TA)n Simple_repeat Simple_repeat 1 53 0 1324 129 0 57 chr1 147228164 147228412 -95435941 + L1MA5A LINE L1 6064 6297 0 2293 91 0 7 chr1 147229848 147230144 -95434209 - AluY SINE Alu -17 294 1 275 271 0 0 chr1 147230742 147230801 -95433552 - L2 LINE L2 -3 3310 3252 654 323 30 0 chr1 147231221 147231422 -95432931 + MIR SINE MIR 22 228 -34 21 0 0 0 chr1 147231760 147231781 -95432572 + AT_rich Low_complexity Low_complexity 1 21 0 234 240 40 0 chr1 147231836 147231886 -95432467 + L2 LINE L2 3262 3313 0 612 146 0 0 chr1 147232618 147232714 -95431639 + L1MA1 LINE L1 6195 6290 -12 23 0 0 0 chr1 147232741 147232764 -95431589 + AT_rich Low_complexity Low_complexity 1 23 0 270 194 0 0 chr1 147232867 147232929 -95431424 + A-rich Low_complexity Low_complexity 4 65 0 2539 85 6 20 chr1 147233047 147233337 -95431016 - HSMAR1 DNA Mariner -666 621 335 2644 30 3 0 chr1 147233337 147233640 -95430713 - AluY SINE Alu -7 304 1 2539 85 6 20 chr1 147233640 147233703 -95430650 - HSMAR1 DNA Mariner -952 335 273 * 4548 110 33 0 chr1 147233698 147234335 -95430018 + HSMAR1 DNA Mariner 629 1286 -1 271 346 59 7 chr1 147234335 147234469 -95429884 - MLT1L LTR MaLR -128 487 347 331 276 105 77 chr1 147234437 147234618 -95429735 - MLT1J LTR MaLR -214 297 112 447 285 70 27 chr1 147235886 147236072 -95428281 - MIR SINE MIR -59 203 10 325 208 56 0 chr1 147237248 147237320 -95427033 - MER5A DNA MER1_type -113 76 1 1622 224 35 61 chr1 147239142 147239634 -95424719 + MLT1D LTR MaLR 27 505 0 636 202 0 8 chr1 147239897 147240021 -95424332 - FLAM_A SINE Alu -2 140 18 1467 229 121 58 chr1 147240022 147240891 -95423462 - Charlie2 DNA MER1_type -83 2779 1856 326 261 171 55 chr1 147240953 147241152 -95423201 - Charlie2 DNA MER1_type -2555 227 6 247 209 139 47 chr1 147241373 147241459 -95422894 + L2 LINE L2 3216 3309 -4 7700 16 1 0 chr1 147241660 147242673 -95421680 + L1PA3 LINE L1 5171 6184 0 429 281 152 28 chr1 147244490 147244668 -95419685 - MIR SINE MIR -26 236 37 193 295 103 13 chr1 147245236 147245314 -95419039 + L3 LINE CR1 1145 1229 -348 274 239 26 80 chr1 147246286 147246399 -95417954 + L3 LINE CR1 1404 1510 -67 218 349 36 0 chr1 147247017 147247100 -95417253 - MIR SINE MIR -12 250 165 620 301 103 60 chr1 147247137 147247585 -95416768 - MLT1J LTR MaLR -44 467 1 200 356 40 0 chr1 147247589 147247690 -95416663 - MIR SINE MIR -109 153 49 1342 217 20 26 chr1 147247708 147248012 -95416341 - L1MD1 LINE L1 -16 6226 5925 297 0 0 0 chr1 147248012 147248045 -95416308 + (CA)n Simple_repeat Simple_repeat 2 34 0 281 225 0 9 chr1 147248122 147248233 -95416120 + (TA)n Simple_repeat Simple_repeat 2 111 0 274 196 9 75 chr1 147248243 147248350 -95416003 - L1M4b LINE L1 -5179 1680 1581 * 572 250 51 6 chr1 147248317 147248493 -95415860 - L1MD1 LINE L1 -331 6722 6539 249 33 0 0 chr1 147248493 147248523 -95415830 + (TG)n Simple_repeat Simple_repeat 1 30 0 1960 124 4 0 chr1 147248527 147248802 -95415551 - AluSp SINE Alu -37 276 1 2475 254 55 38 chr1 147248824 147250133 -95414220 - L1M4c LINE L1 -4741 2218 895 186 388 33 25 chr1 147250286 147250407 -95413946 + L2 LINE L2 3175 3296 -17 985 321 35 25 chr1 147250685 147251006 -95413347 - L1ME3A LINE L1 -317 5853 5522 2463 73 3 0 chr1 147251006 147251308 -95413045 + AluSx SINE Alu 1 303 -9 985 321 35 25 chr1 147251308 147251574 -95412779 - L1ME3A LINE L1 -648 5522 5260 1719 200 55 0 chr1 147251585 147251915 -95412438 + MER7A DNA MER2_type 1 346 0 338 341 54 58 chr1 147251984 147252189 -95412164 - L1ME3A LINE L1 -2 6168 5965 263 265 144 45 chr1 147252232 147252587 -95411766 - L1ME3A LINE L1 -937 5209 4820 1973 109 26 0 chr1 147253116 147253427 -95410926 - AluSq SINE Alu 0 330 13 192 135 0 0 chr1 147257231 147257268 -95407085 + (TG)n Simple_repeat Simple_repeat 2 38 0 231 188 0 0 chr1 147257395 147257443 -95406910 + (CA)n Simple_repeat Simple_repeat 2 49 0 215 370 101 0 chr1 147257709 147257828 -95406525 + MIR3 SINE MIR 78 208 0 1480 223 65 68 chr1 147258252 147258696 -95405657 + MER31B LTR ERV1 1 443 -23 649 186 0 36 chr1 147259055 147259195 -95405158 + FLAM_A SINE Alu 8 142 0 675 265 20 40 chr1 147259258 147259507 -95404846 + L1ME LINE L1 5354 5597 -569 621 258 20 93 chr1 147259514 147259859 -95404494 + L1MDa LINE L1 21 340 -6200 771 218 111 8 chr1 147260203 147260464 -95403889 + L1MDa LINE L1 1053 1340 -5203 240 111 0 0 chr1 147260825 147260861 -95403492 + (TA)n Simple_repeat Simple_repeat 1 36 0 785 268 56 63 chr1 147261021 147261595 -95402758 - Charlie2a DNA MER1_type -645 2217 1648 460 269 138 0 chr1 147261622 147261752 -95402601 + L1MDa LINE L1 575 722 -5818 3525 131 9 13 chr1 147261752 147262333 -95402020 + LTR10C LTR ERV1 5 505 0 1113 240 39 66 chr1 147262343 147262597 -95401756 + L1MDa LINE L1 749 1008 -5532 2102 88 10 31 chr1 147262597 147262891 -95401462 + AluY SINE Alu 1 288 -23 237 33 0 0 chr1 147262898 147262928 -95401425 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1113 240 39 66 chr1 147262928 147263028 -95401325 + L1MDa LINE L1 1014 1101 -5439 510 184 88 7 chr1 147263048 147263184 -95401169 + L1MDa LINE L1 1636 1782 -4758 4239 139 19 1 chr1 147263699 147264375 -95399978 + L1PA15 LINE L1 5465 6152 -13 2496 230 75 5 chr1 147264407 147265032 -95399321 + L1MD2 LINE L1 5475 6143 -216 275 270 0 0 chr1 147265035 147265109 -95399244 + L1MD2 LINE L1 6201 6274 -85 1385 244 92 7 chr1 147265187 147265646 -95398707 - L1ME2 LINE L1 -2 6162 5665 597 287 112 20 chr1 147265725 147267542 -95396811 - L1ME2 LINE L1 -970 5176 3007 334 211 0 0 chr1 147267546 147267617 -95396736 + L1 LINE L1 4217 4287 -1859 * 5292 166 37 29 chr1 147267611 147269197 -95395156 + L1PA16 LINE L1 4582 6166 0 309 278 19 19 chr1 147269567 147269675 -95394678 + L1ME LINE L1 613 720 -5914 598 284 92 47 chr1 147270399 147270852 -95393501 + L1ME LINE L1 1003 1485 -5057 1637 184 42 0 chr1 147270852 147271135 -95393218 - AluJo SINE Alu -17 295 1 598 284 92 47 chr1 147271135 147271212 -95393141 + L1ME LINE L1 1485 1557 -4985 10383 242 34 41 chr1 147271214 147272307 -95392046 + L1MA4A LINE L1 7 1107 -5742 2405 137 6 6 chr1 147272307 147272671 -95391682 - THE1B LTR MaLR 0 364 1 10383 242 34 41 chr1 147272671 147274498 -95389855 + L1MA4A LINE L1 1107 2904 -3945 6675 209 47 12 chr1 147274501 147277524 -95386829 + L1MA4A LINE L1 3552 6735 -270 1906 184 54 27 chr1 147277529 147278063 -95386290 - MLT2A2 LTR ERVL -7 547 2 486 185 70 0 chr1 147278066 147278237 -95386116 + L1MA4A LINE L1 6739 6982 -23 * 1051 287 75 16 chr1 147278231 147278847 -95385506 + L1ME LINE L1 1683 2334 -4491 384 284 21 50 chr1 147279096 147279237 -95385116 + MIR SINE MIR 67 203 -59 306 325 45 19 chr1 147279736 147279890 -95384463 + MIR SINE MIR 78 235 -27 361 316 123 0 chr1 147280584 147280698 -95383655 + MIR3 SINE MIR 14 141 -67 307 246 34 46 chr1 147280751 147280926 -95383427 + (TATATG)n Simple_repeat Simple_repeat 1 173 0 300 271 8 41 chr1 147280981 147281103 -95383250 + (TATG)n Simple_repeat Simple_repeat 3 120 0 242 269 87 48 chr1 147282607 147282711 -95381642 + L3 LINE CR1 1455 1562 -15 237 203 51 51 chr1 147282850 147282909 -95381444 + L1P4 LINE L1 5680 5738 -428 443 277 101 55 chr1 147283201 147283419 -95380934 + MIR SINE MIR 19 262 0 227 390 6 53 chr1 147283478 147283647 -95380706 - L2 LINE L2 -212 3060 2900 29 28 0 0 chr1 147285310 147285346 -95379007 + AT_rich Low_complexity Low_complexity 1 36 0 336 64 0 0 chr1 147285990 147286037 -95378316 + (CA)n Simple_repeat Simple_repeat 1 47 0 331 341 49 8 chr1 147286612 147286735 -95377618 - MIR3 SINE MIR -67 141 14 371 143 78 0 chr1 147286833 147286910 -95377443 - L1MA10 LINE L1 -1 6333 6251 223 328 42 25 chr1 147287054 147287173 -95377180 + L2 LINE L2 2933 3053 -219 309 231 241 0 chr1 147287318 147287426 -95376927 + L2 LINE L2 3137 3270 -2 206 326 106 59 chr1 147289230 147289301 -95375052 + L3 LINE CR1 883 949 -628 1459 210 52 9 chr1 147289301 147289625 -95374728 + MER58B DNA MER1_type 1 338 -3 206 326 106 59 chr1 147289625 147289958 -95374395 + L3 LINE CR1 949 1306 -271 212 308 187 0 chr1 147290409 147290500 -95373853 + MIR3 SINE MIR 91 198 -10 355 65 52 13 chr1 147290547 147290624 -95373729 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 298 235 15 106 chr1 147290849 147290981 -95373372 + MER106B DNA MER1_type 1 120 -939 4057 163 44 21 chr1 147290984 147291821 -95372532 - L1MA4 LINE L1 0 6300 5445 181 228 70 35 chr1 147293517 147293574 -95370779 - MIR SINE MIR -49 213 155 308 322 67 48 chr1 147293609 147293817 -95370536 + MIR SINE MIR 51 262 0 327 308 15 15 chr1 147294880 147295010 -95369343 - MER94 DNA DNA 0 134 5 245 290 14 0 chr1 147295396 147295465 -95368888 + L3 LINE CR1 1216 1285 -292 187 322 244 0 chr1 147295520 147295635 -95368718 + MIR3 SINE MIR 52 194 -14 358 330 9 0 chr1 147296275 147296381 -95367972 + U6 snRNA snRNA 1 107 0 2264 99 0 3 chr1 147296737 147297039 -95367314 - AluY SINE Alu -10 301 1 254 263 44 0 chr1 147297187 147297301 -95367052 + (TA)n Simple_repeat Simple_repeat 2 120 0 208 305 0 17 chr1 147297391 147297450 -95366903 - MIR SINE MIR -63 145 88 2640 93 13 16 chr1 147298289 147298665 -95365688 + THE1C LTR MaLR 1 375 0 515 135 11 22 chr1 147298665 147298754 -95365599 + THE1C-int LTR MaLR 1 88 -1492 * 4855 141 38 17 chr1 147298749 147299522 -95364831 + THE1C-int LTR MaLR 659 1447 -133 603 290 64 12 chr1 147299925 147300253 -95364100 + L1M4 LINE L1 2142 2486 -3660 817 251 89 28 chr1 147300308 147300906 -95363447 + L1M4 LINE L1 2667 3300 -2846 231 88 0 0 chr1 147301521 147301555 -95362798 + (TG)n Simple_repeat Simple_repeat 1 34 0 224 270 0 16 chr1 147303173 147303236 -95361117 + (CCA)n Simple_repeat Simple_repeat 2 63 0 8509 184 43 16 chr1 147303591 147303991 -95360362 + L1PB2 LINE L1 3272 3660 -2491 338 0 24 0 chr1 147303991 147304033 -95360320 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 8509 184 43 16 chr1 147304033 147304060 -95360293 + L1PB2 LINE L1 3660 3685 -2466 387 0 0 0 chr1 147304060 147304103 -95360250 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 8509 184 43 16 chr1 147304103 147306489 -95357864 + L1PB2 LINE L1 3685 6151 0 3815 206 28 12 chr1 147306501 147307338 -95357015 + L1MB1 LINE L1 5318 6167 -1 3819 200 53 30 chr1 147307339 147308265 -95356088 + L1MD1 LINE L1 5285 6231 -11 2306 78 0 3 chr1 147308273 147308567 -95355786 + AluY SINE Alu 19 311 0 311 318 90 11 chr1 147309161 147309311 -95355042 + MIR3 SINE MIR 10 167 -67 1811 152 152 11 chr1 147310009 147310384 -95353969 + MSTA LTR MaLR 1 428 0 219 294 79 32 chr1 147311385 147311511 -95352842 + MIR3 SINE MIR 64 195 -13 1488 123 0 0 chr1 147313412 147313615 -95350738 + AluSg SINE Alu 1 203 -107 210 71 0 0 chr1 147313622 147313650 -95350703 + (A)n Simple_repeat Simple_repeat 1 28 0 9053 29 1 0 chr1 147315344 147317197 -95347156 + L1PA4 LINE L1 4288 6152 -3 23 33 0 0 chr1 147317197 147317227 -95347126 + AT_rich Low_complexity Low_complexity 1 30 0 309 291 264 16 chr1 147318390 147318572 -95345781 + L3 LINE CR1 1294 1520 -57 2317 112 0 0 chr1 147318732 147319027 -95345326 + AluSx SINE Alu 1 295 -17 189 382 24 41 chr1 147319454 147319577 -95344776 + L2 LINE L2 2926 3046 -226 188 326 54 47 chr1 147320669 147320798 -95343555 - MIR SINE MIR -55 207 78 209 241 0 69 chr1 147321238 147321296 -95343057 - L2 LINE L2 0 3272 3219 233 29 0 29 chr1 147321350 147321385 -95342968 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 254 259 139 60 chr1 147322738 147322919 -95341434 - MIR SINE MIR -62 146 12 616 263 50 17 chr1 147323694 147323873 -95340480 - MIR SINE MIR -70 192 8 1519 184 3 32 chr1 147324149 147324464 -95339889 - AluJo SINE Alu -6 306 1 301 389 0 0 chr1 147325783 147325891 -95338462 - MIR SINE MIR -69 139 32 252 0 0 0 chr1 147326758 147326786 -95337567 + (TC)n Simple_repeat Simple_repeat 2 29 0 237 65 0 0 chr1 147326785 147326816 -95337537 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 21 0 0 0 chr1 147329374 147329395 -95334958 + AT_rich Low_complexity Low_complexity 1 21 0 194 328 33 16 chr1 147330548 147330609 -95333744 + L2 LINE L2 3144 3205 -67 241 226 0 20 chr1 147331101 147331203 -95333150 + GA-rich Low_complexity Low_complexity 3 102 0 397 370 65 11 chr1 147333063 147333433 -95330920 + L1MEc LINE L1 215 604 -5792 1576 276 47 19 chr1 147333506 147334205 -95330148 + L1MEc LINE L1 1345 2063 -4333 399 267 22 0 chr1 147334207 147334342 -95330011 - Charlie1 DNA MER1_type -1 2760 2623 * 691 272 29 5 chr1 147334339 147334545 -95329808 - Charlie1 DNA MER1_type -2535 226 16 1307 247 40 13 chr1 147334587 147335137 -95329216 + L1MEc LINE L1 2079 2618 -3597 589 346 113 28 chr1 147335264 147335769 -95328584 + L3 LINE CR1 1016 1563 -14 211 371 57 11 chr1 147336306 147336481 -95327872 + MIR SINE MIR 67 249 -13 28 29 0 0 chr1 147337073 147337108 -95327245 + AT_rich Low_complexity Low_complexity 1 35 0 1236 83 6 0 chr1 147338259 147338428 -95325925 + L1PA8 LINE L1 6003 6172 0 4623 64 51 3 chr1 147338610 147339220 -95325133 + L1PA8 LINE L1 5524 6162 -10 476 332 25 9 chr1 147339388 147339585 -95324768 + MIR3 SINE MIR 7 207 -1 282 292 10 27 chr1 147340188 147340304 -95324049 + MIR SINE MIR 31 141 -67 419 290 56 49 chr1 147340335 147340497 -95323856 - MIR3 SINE MIR -8 200 38 21 0 0 0 chr1 147342169 147342190 -95322163 + AT_rich Low_complexity Low_complexity 1 21 0 246 358 44 0 chr1 147342793 147342930 -95321423 - MER117 DNA MER1_type -53 144 2 228 301 146 10 chr1 147343293 147343396 -95320957 - MIR SINE MIR -129 133 17 325 291 182 0 chr1 147343414 147343524 -95320829 + MIR3 SINE MIR 74 203 -5 320 339 67 33 chr1 147343720 147343900 -95320453 + MIR3 SINE MIR 9 194 -14 307 244 16 16 chr1 147344661 147344784 -95319569 + (TCTA)n Simple_repeat Simple_repeat 2 124 0 * 346 235 37 0 chr1 147344704 147344785 -95319568 + (TCTCTG)n Simple_repeat Simple_repeat 3 86 0 23 33 0 0 chr1 147346777 147346807 -95317546 + AT_rich Low_complexity Low_complexity 1 30 0 1801 128 9 78 chr1 147347363 147347682 -95316671 + AluSx SINE Alu 1 297 -15 248 286 133 31 chr1 147348137 147348235 -95316118 - L2 LINE L2 -15 3257 3150 1569 199 85 0 chr1 147348403 147348719 -95315634 - MER2 DNA MER2_type -1 343 1 1062 173 0 5 chr1 147350026 147350217 -95314136 - Tigger7 DNA MER2_type 0 2487 2298 * 1401 225 11 0 chr1 147350213 147350497 -95313856 - Tigger7 DNA MER2_type -2169 318 32 430 293 72 48 chr1 147350996 147351204 -95313149 - MIR SINE MIR -2 260 48 21 0 0 0 chr1 147352017 147352038 -95312315 + AT_rich Low_complexity Low_complexity 1 21 0 605 265 125 56 chr1 147353888 147354337 -95310016 + MLT1H LTR MaLR 66 545 -4 192 303 61 30 chr1 147359715 147359781 -95304572 + MER5A DNA MER1_type 21 88 -101 27 29 0 0 chr1 147360272 147360306 -95304047 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr1 147361094 147361117 -95303236 + (GA)n Simple_repeat Simple_repeat 2 24 0 214 239 119 0 chr1 147362235 147362302 -95302051 - MIR SINE MIR -65 197 123 3672 66 0 0 chr1 147362523 147362992 -95301361 - L1PA7 LINE L1 -432 5722 5254 3163 72 2 16 chr1 147362996 147363426 -95300927 + L1PA7 LINE L1 5730 6153 -1 722 208 47 21 chr1 147363492 147363684 -95300669 + L1MB1 LINE L1 4874 5070 -1076 21 57 0 0 chr1 147363691 147363726 -95300627 + AT_rich Low_complexity Low_complexity 1 35 0 4214 177 55 14 chr1 147363876 147364932 -95299421 + L1MB1 LINE L1 5072 6168 0 2082 130 3 0 chr1 147364979 147365287 -95299066 - AluSx SINE Alu -3 309 1 3256 77 5 0 chr1 147365783 147366214 -95298139 + L1PA8 LINE L1 5740 6172 0 28 0 0 0 chr1 147366856 147366884 -95297469 + AT_rich Low_complexity Low_complexity 1 28 0 1592 183 39 3 chr1 147368097 147368217 -95296136 + AluSx SINE Alu 1 115 -197 232 27 54 0 chr1 147368217 147368254 -95296099 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1592 183 39 3 chr1 147368254 147368417 -95295936 + AluSx SINE Alu 115 294 -18 285 357 54 9 chr1 147368560 147368672 -95295681 - L2 LINE L2 0 3272 3156 2425 90 0 0 chr1 147369959 147370269 -95294084 + AluSx SINE Alu 1 310 -2 786 177 25 0 chr1 147370280 147370438 -95293915 - L1PBa LINE L1 -5912 951 790 920 203 106 0 chr1 147370453 147370612 -95293741 + ERVL LTR ERVL 1015 1202 -4562 291 54 0 0 chr1 147370612 147370649 -95293704 + (TTGG)n Simple_repeat Simple_repeat 1 37 0 920 203 106 0 chr1 147370649 147370696 -95293657 + ERVL LTR ERVL 1202 1243 -4521 * 2785 160 18 44 chr1 147370694 147371244 -95293109 + ERVL LTR ERVL 5067 5602 -162 1397 296 14 3 chr1 147371245 147371600 -95292753 + MLT2B1 LTR ERVL 162 520 0 504 348 41 25 chr1 147371639 147371883 -95292470 + MIR SINE MIR 3 250 -12 22 35 0 0 chr1 147371892 147371921 -95292432 + AT_rich Low_complexity Low_complexity 1 29 0 2922 93 60 7 chr1 147371940 147372370 -95291983 - MLT2A2 LTR ERVL 0 453 1 24 0 0 0 chr1 147372428 147372452 -95291901 + AT_rich Low_complexity Low_complexity 1 24 0 209 192 179 0 chr1 147373475 147373553 -95290800 - L2 LINE L2 -1219 2095 2004 291 28 0 0 chr1 147374073 147374109 -95290244 + (GTTTG)n Simple_repeat Simple_repeat 4 39 0 858 207 5 27 chr1 147375418 147375606 -95288747 - MER5A DNA MER1_type -4 185 2 2465 65 3 0 chr1 147376787 147377093 -95287260 - AluY SINE Alu -4 307 1 952 180 0 17 chr1 147377163 147377341 -95287012 + MLT1B LTR MaLR 1 175 -215 1107 53 0 0 chr1 147377343 147377474 -95286879 + AluYa5 SINE Alu 1 131 -180 2244 70 0 14 chr1 147377481 147377803 -95286550 + AluY SINE Alu 1 318 0 565 128 12 0 chr1 147377865 147377951 -95286402 + MLT1B LTR MaLR 304 390 0 215 190 17 0 chr1 147379750 147379808 -95284545 + CT-rich Low_complexity Low_complexity 2 60 0 457 261 206 5 chr1 147381376 147381594 -95282759 - MIR SINE MIR 0 262 1 2505 36 10 0 chr1 147382562 147382871 -95281482 - L1PA4 LINE L1 -3 6152 5841 333 49 0 0 chr1 147382871 147382912 -95281441 + L1P2 LINE L1 5697 5737 -417 * 3914 25 0 0 chr1 147382910 147383386 -95280967 - L1PA3 LINE L1 -814 5332 4857 7138 19 1 0 chr1 147383386 147384209 -95280144 + L1PA3 LINE L1 5328 6155 0 31 92 0 0 chr1 147385075 147385162 -95279191 + AT_rich Low_complexity Low_complexity 1 87 0 282 368 42 25 chr1 147385326 147385685 -95278668 + L1MC/D LINE L1 5444 5808 -2000 1771 130 30 3 chr1 147385867 147386167 -95278186 - L1MA2 LINE L1 -212 6092 5785 328 333 78 8 chr1 147386512 147386701 -95277652 - L1MC/D LINE L1 -515 5647 5488 352 102 34 17 chr1 147387830 147387889 -95276464 + MSTA LTR MaLR 1 60 -368 303 28 0 0 chr1 147388550 147388586 -95275767 + (CA)n Simple_repeat Simple_repeat 1 36 0 297 128 0 0 chr1 147389348 147389395 -95274958 + (TC)n Simple_repeat Simple_repeat 2 48 0 2015 148 0 0 chr1 147391330 147391634 -95272719 + AluSq SINE Alu 1 304 -9 27 49 0 0 chr1 147392955 147392996 -95271357 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr1 147393087 147393112 -95271241 + AT_rich Low_complexity Low_complexity 1 25 0 436 314 39 0 chr1 147393245 147393401 -95270952 + MIR SINE MIR 67 228 -34 203 222 56 0 chr1 147393665 147393719 -95270634 + T-rich Low_complexity Low_complexity 3 59 0 214 280 120 46 chr1 147393782 147393957 -95270396 + L2 LINE L2 2127 2314 -1000 397 363 13 13 chr1 147394102 147394259 -95270094 + MIR SINE MIR 2 158 -104 658 317 35 0 chr1 147394339 147394538 -95269815 - MIR SINE MIR -26 236 31 219 36 0 0 chr1 147395105 147395133 -95269220 + (ATG)n Simple_repeat Simple_repeat 1 28 0 316 326 80 58 chr1 147396118 147396443 -95267910 - L1MEd LINE L1 -4887 1232 901 189 94 0 0 chr1 147396547 147396579 -95267774 + (TC)n Simple_repeat Simple_repeat 2 33 0 431 35 18 0 chr1 147397711 147397768 -95266585 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 479 298 31 47 chr1 147398027 147398282 -95266071 - MIR SINE MIR -2 260 10 459 291 74 11 chr1 147399713 147399902 -95264451 - L2 LINE L2 0 3313 3113 25 90 0 0 chr1 147400731 147400798 -95263555 + AT_rich Low_complexity Low_complexity 1 67 0 594 78 17 17 chr1 147401134 147401250 -95263103 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 186 43 0 0 chr1 147401776 147401799 -95262554 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 23 33 0 0 chr1 147402037 147402067 -95262286 + AT_rich Low_complexity Low_complexity 1 30 0 191 36 36 0 chr1 147402161 147402189 -95262164 + (TA)n Simple_repeat Simple_repeat 1 29 0 413 378 36 23 chr1 147402489 147402873 -95261480 - L2 LINE L2 -892 2422 2034 756 228 46 41 chr1 147403110 147403329 -95261024 + MIR SINE MIR 12 231 -31 199 377 40 71 chr1 147403377 147403481 -95260872 - L2 LINE L2 -338 2976 2870 321 26 0 0 chr1 147403481 147403519 -95260834 + (GA)n Simple_repeat Simple_repeat 2 39 0 199 377 40 71 chr1 147403519 147403764 -95260589 - L2 LINE L2 -444 2870 2638 723 256 61 30 chr1 147403764 147404092 -95260261 + L1ME1 LINE L1 4285 4622 -1524 2634 221 38 62 chr1 147404114 147405014 -95259339 + L1ME1 LINE L1 5205 6089 -77 947 179 46 111 chr1 147405026 147405288 -95259065 + MER76 LTR ERV 444 688 0 22 0 0 0 chr1 147406990 147407012 -95257341 + AT_rich Low_complexity Low_complexity 1 22 0 278 328 76 0 chr1 147407020 147407151 -95257202 + HERVL68 LTR ERVL 2148 2288 -749 1969 251 31 22 chr1 147407221 147407731 -95256622 + HERVL68 LTR ERVL 2360 2874 -163 2255 211 41 67 chr1 147407961 147408666 -95255687 + MER76 LTR ERV 1 687 -1 859 239 73 0 chr1 147409755 147409960 -95254393 + MER76 LTR ERV 66 285 -403 216 0 0 0 chr1 147410079 147410103 -95254250 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1264 280 119 17 chr1 147410383 147410855 -95253498 + MLT1H LTR MaLR 28 547 -2 265 354 155 10 chr1 147411037 147411243 -95253110 + L2 LINE L2 2824 3059 -213 25 65 0 0 chr1 147411410 147411456 -95252897 + AT_rich Low_complexity Low_complexity 1 46 0 201 182 36 18 chr1 147411492 147411547 -95252806 + (TTTAA)n Simple_repeat Simple_repeat 3 58 0 398 266 60 93 chr1 147411547 147411795 -95252558 - MER112 DNA MER1_type -9 251 12 203 319 72 0 chr1 147411799 147411868 -95252485 + L2 LINE L2 1718 1791 -1523 1184 279 57 96 chr1 147411875 147412481 -95251872 + L2 LINE L2 2244 2872 -441 1360 128 41 5 chr1 147412481 147412700 -95251653 + MER30 DNA MER1_type 4 230 0 1184 279 57 96 chr1 147412700 147412872 -95251481 + L2 LINE L2 2872 3049 -264 2641 138 50 4 chr1 147412872 147413336 -95251017 + LTR19A LTR ERV1 2 486 0 1184 279 57 96 chr1 147413336 147413669 -95250684 + L2 LINE L2 3049 3312 -1 221 81 0 27 chr1 147414963 147415000 -95249353 + (CATAA)n Simple_repeat Simple_repeat 3 38 0 1121 156 71 9 chr1 147415707 147415918 -95248435 - L1PA16 LINE L1 -30 6136 5913 513 282 22 72 chr1 147415961 147416346 -95248007 + L1ME LINE L1 1775 2178 -4543 2838 10 0 0 chr1 147416777 147417088 -95247265 + AluYa5 SINE Alu 1 311 0 264 281 112 20 chr1 147418162 147418358 -95245995 + L1ME LINE L1 5925 6138 -377 3225 90 9 9 chr1 147418646 147419090 -95245263 - MLT2A1 LTR ERVL 0 444 1 706 212 21 93 chr1 147419259 147419495 -95244858 - MER20 DNA MER1_type 0 219 1 275 328 64 16 chr1 147420233 147420358 -95243995 + L2 LINE L2 2625 2755 -559 654 215 0 0 chr1 147422311 147422441 -95241912 + FAM SINE Alu 1 41 -8 260 256 80 16 chr1 147423074 147423199 -95241154 - L1ME3A LINE L1 -208 5962 5830 235 298 161 6 chr1 147423288 147423456 -95240897 - L1ME3A LINE L1 -2385 5610 5417 294 73 0 0 chr1 147423462 147423503 -95240850 + (TG)n Simple_repeat Simple_repeat 2 42 0 451 318 66 15 chr1 147423510 147423708 -95240645 - L1ME3A LINE L1 -831 5315 5108 224 220 44 0 chr1 147424465 147424556 -95239797 + (TA)n Simple_repeat Simple_repeat 2 96 0 1361 30 0 0 chr1 147424589 147424753 -95239600 + L1PA3 LINE L1 5662 5825 -330 338 41 20 0 chr1 147424753 147424801 -95239552 + L1PA6 LINE L1 6105 6154 0 451 327 80 10 chr1 147424939 147425138 -95239215 + MIR SINE MIR 47 259 -3 733 192 0 0 chr1 147426175 147426300 -95238053 + FLAM_C SINE Alu 1 125 -8 1914 240 60 40 chr1 147426316 147427096 -95237257 - MER52A LTR ERV1 -948 807 90 228 349 61 23 chr1 147427203 147427335 -95237018 + MIR SINE MIR 32 168 -94 181 281 11 112 chr1 147428403 147428492 -95235861 + L2 LINE L2 3190 3269 -3 719 128 18 0 chr1 147428887 147428996 -95235357 + AluSp/q SINE Alu 179 289 -24 363 263 69 31 chr1 147430976 147431164 -95233189 - MIR SINE MIR -42 220 31 276 301 90 30 chr1 147431334 147431467 -95232886 + MIR3 SINE MIR 20 160 -48 * 317 369 21 7 chr1 147431430 147431571 -95232782 - MER5A DNA MER1_type -14 175 33 257 382 0 0 chr1 147431503 147431592 -95232761 + MER5A DNA MER1_type 101 189 0 * 193 256 0 0 chr1 147431592 147431627 -95232726 + MIR3 SINE MIR 153 187 -21 302 330 85 21 chr1 147431660 147431848 -95232505 - MIR SINE MIR -59 203 4 23 0 0 0 chr1 147431982 147432005 -95232348 + AT_rich Low_complexity Low_complexity 1 23 0 183 256 0 0 chr1 147432672 147432711 -95231642 + MIR3 SINE MIR 149 187 -21 180 215 152 25 chr1 147432744 147432823 -95231530 - MIR SINE MIR -59 203 115 1302 110 3 3 chr1 147433219 147433493 -95230860 - L1PA13 LINE L1 -555 5613 5240 3640 103 2 0 chr1 147433495 147434011 -95230342 + L1PA13 LINE L1 5643 6159 -4 180 325 225 17 chr1 147434035 147434155 -95230198 - L3 LINE CR1 -65 1512 1368 284 361 19 52 chr1 147434177 147434390 -95229963 + MIR SINE MIR 19 224 -38 869 195 0 0 chr1 147434630 147434779 -95229574 + FRAM SINE Alu 8 156 -20 2454 88 0 0 chr1 147435298 147435606 -95228747 + AluY SINE Alu 1 308 -3 183 296 56 0 chr1 147435634 147435688 -95228665 + L2 LINE L2 2987 3043 -229 4227 29 0 0 chr1 147435691 147436183 -95228170 - L1PA4 LINE L1 -183 5972 5481 11172 26 21 0 chr1 147436183 147438285 -95226068 - L1PA2 LINE L1 -1 6154 4026 1323 55 0 0 chr1 147438286 147438451 -95225902 + L1PA4 LINE L1 5961 6125 -30 281 26 0 26 chr1 147438451 147438490 -95225863 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 48 18 0 0 chr1 147438835 147438890 -95225463 + AT_rich Low_complexity Low_complexity 1 55 0 243 317 39 39 chr1 147438918 147439022 -95225331 + L2 LINE L2 3169 3272 0 389 355 84 23 chr1 147439591 147439805 -95224548 - MIR SINE MIR -29 233 7 2350 279 129 28 chr1 147442134 147443151 -95221202 + L2 LINE L2 1641 2760 -554 667 271 55 96 chr1 147443149 147443547 -95220806 + L2 LINE L2 2928 3309 -4 * 1844 159 0 0 chr1 147443651 147443948 -95220405 - AluJb SINE Alu 0 303 7 27 29 0 0 chr1 147444958 147444992 -95219361 + AT_rich Low_complexity Low_complexity 1 34 0 334 325 147 0 chr1 147445262 147445453 -95218900 - L3 LINE CR1 -57 1520 1302 243 299 6 152 chr1 147446138 147446302 -95218051 - MIR3 SINE MIR -4 204 65 699 143 118 50 chr1 147447302 147447463 -95216890 + L1MA7 LINE L1 6115 6286 -5 688 118 73 0 chr1 147448185 147448295 -95216058 + MER67A LTR ERV1 82 199 -344 210 91 0 0 chr1 147448301 147448334 -95216019 + (TG)n Simple_repeat Simple_repeat 2 34 0 306 86 103 0 chr1 147448352 147448410 -95215943 + MER67A LTR ERV1 478 541 -2 344 233 0 14 chr1 147448427 147448500 -95215853 + MER63 DNA MER1_type 675 746 -316 235 260 94 0 chr1 147448687 147448783 -95215570 + L1ME LINE L1 1860 1964 -4432 769 233 57 10 chr1 147448827 147449020 -95215333 - MER70B LTR ERVL -146 432 231 426 250 56 0 chr1 147449025 147449133 -95215220 + L1ME LINE L1 5632 5745 -490 1147 345 113 42 chr1 147449464 147451108 -95213245 - L2 LINE L2 -1 3312 1544 405 320 39 56 chr1 147452282 147452513 -95211840 - MIR SINE MIR -2 260 34 205 383 114 31 chr1 147452640 147452964 -95211389 - L2 LINE L2 -4 3268 2918 296 354 145 36 chr1 147453167 147453221 -95211132 + L3 LINE CR1 701 748 -829 2513 51 0 16 chr1 147453221 147453535 -95210818 + AluY SINE Alu 1 309 -2 296 354 145 36 chr1 147453535 147453839 -95210514 + L3 LINE CR1 748 1098 -479 273 376 62 49 chr1 147454206 147454512 -95209841 + L2 LINE L2 2948 3257 -15 1328 119 70 13 chr1 147454970 147455197 -95209156 - Tigger5 DNA MER2_type -1 2322 2083 393 250 0 0 chr1 147455179 147455259 -95209094 - Tigger5 DNA MER2_type -2242 81 2 * 288 264 91 45 chr1 147455403 147455513 -95208840 + L3 LINE CR1 1458 1572 -5 702 278 90 5 chr1 147456317 147456540 -95207813 - MIR SINE MIR -19 243 2 224 281 191 0 chr1 147456832 147456921 -95207432 + MIR SINE MIR 86 191 -71 1474 227 97 33 chr1 147456926 147457379 -95206974 - MER90 LTR ERV1 -3 611 130 503 299 89 28 chr1 147458022 147458313 -95206040 + L2 LINE L2 3005 3313 0 2344 81 0 0 chr1 147458330 147458628 -95205725 + AluY SINE Alu 3 300 -11 3113 155 15 4 chr1 147458786 147459334 -95205019 - L1MA6 LINE L1 0 6300 5747 958 140 0 0 chr1 147459343 147459500 -95204853 + L1MA6 LINE L1 5599 5755 -545 281 364 43 71 chr1 147459502 147459642 -95204711 + L2 LINE L2 3137 3272 0 397 381 73 14 chr1 147459712 147460069 -95204284 - L3 LINE CR1 -732 845 468 313 197 16 0 chr1 147460352 147460413 -95203940 - MER58 DNA MER1_type 0 2420 2359 5539 128 32 8 chr1 147460472 147461494 -95202859 + L1PB2 LINE L1 5102 6141 -10 1752 158 135 49 chr1 147461525 147461911 -95202442 + MSTB LTR MaLR 8 426 0 581 267 30 0 chr1 147461911 147462046 -95202307 - MER58A DNA MER1_type 0 153 15 417 54 0 0 chr1 147462089 147462145 -95202208 + (TC)n Simple_repeat Simple_repeat 2 57 0 492 48 0 0 chr1 147462145 147462208 -95202145 + (CA)n Simple_repeat Simple_repeat 1 63 0 1043 211 38 0 chr1 147463065 147463330 -95201023 - L1MA4 LINE L1 -16 7000 6726 4313 175 17 10 chr1 147463516 147464922 -95199431 - L1MA4 LINE L1 -283 6733 5317 2493 49 3 13 chr1 147464922 147465227 -95199126 - AluY SINE Alu -9 302 1 4313 175 17 10 chr1 147465227 147465308 -95199045 - L1MA4 LINE L1 -1699 5317 5238 537 156 64 28 chr1 147465309 147465418 -95198935 + THE1C LTR MaLR 1 113 -262 1471 178 10 3 chr1 147465419 147465712 -95198641 - L1MA4 LINE L1 -2123 4739 4445 5404 234 71 24 chr1 147465732 147465993 -95198360 - L1MA4 LINE L1 -3108 3754 3507 2301 101 0 0 chr1 147465993 147466290 -95198063 - AluSc SINE Alu -10 299 3 5404 234 71 24 chr1 147466290 147470521 -95193832 - L1MA4 LINE L1 -3355 3507 6 5817 201 45 16 chr1 147470817 147472112 -95192241 - L1M1 LINE L1 -4066 1262 14 300 294 116 31 chr1 147472191 147473198 -95191155 - L1M4 LINE L1 -2377 3769 2677 431 272 29 10 chr1 147473525 147473628 -95190725 - MER5A DNA MER1_type -3 186 82 371 304 5 82 chr1 147474524 147474708 -95189645 + MIR3 SINE MIR 32 201 -7 287 65 22 0 chr1 147475682 147475728 -95188625 + (TG)n Simple_repeat Simple_repeat 1 47 0 221 341 127 8 chr1 147476099 147476225 -95188128 + MIR3 SINE MIR 65 205 -3 2035 82 0 11 chr1 147476713 147476982 -95187371 - AluSc SINE Alu -3 306 41 1456 197 59 126 chr1 147478456 147478964 -95185389 - LTR45B LTR ERV1 -14 475 2 222 368 45 23 chr1 147479315 147479448 -95184905 - L2 LINE L2 0 3272 3137 22 35 0 0 chr1 147479463 147479492 -95184861 + AT_rich Low_complexity Low_complexity 1 29 0 554 301 6 0 chr1 147480973 147481129 -95183224 - MIR SINE MIR -104 158 2 206 318 16 0 chr1 147481239 147481302 -95183051 - MIR SINE MIR -148 114 51 1134 104 0 0 chr1 147481387 147481541 -95182812 + AluSq SINE Alu 153 306 -7 267 356 10 0 chr1 147481548 147481649 -95182704 - MIR3 SINE MIR -1 207 106 189 307 40 0 chr1 147481747 147481822 -95182531 + MIR SINE MIR 158 235 -27 2419 47 40 7 chr1 147482636 147482935 -95181418 - AluY SINE Alu -2 309 1 511 318 23 6 chr1 147483903 147484079 -95180274 - MIR3 SINE MIR -11 197 19 2194 101 0 1 chr1 147485406 147485714 -95178639 - L1PA8A LINE L1 -31 6131 5834 246 351 101 7 chr1 147487355 147487503 -95176850 - L2 LINE L2 0 3272 3111 1175 311 46 27 chr1 147487514 147488185 -95176168 + L1MC4a LINE L1 5378 6133 -1675 1771 158 26 16 chr1 147488206 147488509 -95175844 - AluJb SINE Alu -6 306 1 266 260 10 0 chr1 147488756 147488856 -95175497 + (TATATG)n Simple_repeat Simple_repeat 3 103 0 1749 218 17 3 chr1 147488945 147489303 -95175050 - MLT1A1 LTR MaLR -2 363 1 407 285 0 31 chr1 147490220 147490353 -95174000 - MIR SINE MIR -42 220 93 2243 99 0 10 chr1 147490383 147490685 -95173668 + AluY SINE Alu 1 299 -12 320 279 74 75 chr1 147490756 147490919 -95173434 - MIR SINE MIR 0 262 92 1703 181 10 0 chr1 147490919 147491223 -95173130 + AluJo SINE Alu 1 307 -5 320 279 74 75 chr1 147491223 147491293 -95173060 - MIR SINE MIR -170 92 23 247 340 10 0 chr1 147491355 147491452 -95172901 - MIR3 SINE MIR -1 207 110 471 257 0 0 chr1 147491797 147491898 -95172455 + MIR3 SINE MIR 66 166 -42 192 261 0 0 chr1 147492725 147492771 -95171582 + MIR SINE MIR 85 130 -78 294 227 91 57 chr1 147493877 147493965 -95170388 + MIR SINE MIR 31 121 -87 3148 115 51 6 chr1 147494376 147494864 -95169489 - MER9 LTR ERVK -1 510 1 238 361 120 0 chr1 147494868 147495001 -95169352 + MIR SINE MIR 49 197 -65 4751 167 60 10 chr1 147495658 147496574 -95167779 - L1MC1 LINE L1 -6 6327 5366 8969 229 7 9 chr1 147496629 147498595 -95165758 - L1P LINE L1 -1409 4737 2774 2189 111 60 23 chr1 147498595 147498946 -95165407 + THE1B LTR MaLR 1 364 0 8969 229 7 9 chr1 147498946 147499092 -95165261 - L1P LINE L1 -3372 2774 2629 5043 139 18 27 chr1 147499094 147499668 -95164685 + L1PA15 LINE L1 4757 5335 -830 2397 82 0 0 chr1 147499668 147499962 -95164391 + AluY SINE Alu 1 294 -17 5043 139 18 27 chr1 147499962 147500786 -95163567 + L1PA15 LINE L1 5335 6148 -17 192 338 71 32 chr1 147501386 147501540 -95162813 - L2 LINE L2 -440 2874 2715 321 383 26 22 chr1 147501772 147502002 -95162351 - MLT1L LTR MaLR -310 305 75 199 338 65 0 chr1 147502115 147502192 -95162161 - L2 LINE L2 -661 2653 2572 2035 152 19 32 chr1 147502314 147502683 -95161670 - THE1B LTR MaLR 0 364 1 11183 105 15 1 chr1 147502683 147504240 -95160113 - THE1B-int LTR MaLR 0 1580 1 2164 119 19 58 chr1 147504242 147504619 -95159734 - THE1B LTR MaLR -2 362 1 301 260 40 0 chr1 147506911 147507011 -95157342 - L1MDa LINE L1 -3568 2972 2869 338 315 91 14 chr1 147507115 147507513 -95156840 - L1MDa LINE L1 -3692 2848 2420 7437 248 42 59 chr1 147507827 147508742 -95155611 - L1MB4 LINE L1 -1 6415 5486 1724 48 5 0 chr1 147508742 147508948 -95155405 - AluY SINE Alu -11 300 94 7437 248 42 59 chr1 147508948 147513751 -95150602 - L1MB4 LINE L1 -930 5486 779 405 302 16 66 chr1 147514511 147514742 -95149611 - MER46C DNA MER2_type -2 336 118 1282 122 73 27 chr1 147514742 147515027 -95149326 - THE1C LTR MaLR 0 375 1 2306 59 0 11 chr1 147519705 147520021 -95144332 - AluY SINE Alu 0 313 1 195 42 0 0 chr1 147521002 147521026 -95143327 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1769 133 4 0 chr1 147521522 147521792 -95142561 + L1PB3 LINE L1 5877 6147 -7 25 0 0 0 chr1 147521792 147521817 -95142536 + AT_rich Low_complexity Low_complexity 1 25 0 261 337 166 15 chr1 147522643 147522842 -95141511 + MIR SINE MIR 8 236 -26 242 259 35 47 chr1 147523233 147523318 -95141035 - MER63 DNA MER1_type -1 1060 977 315 274 14 0 chr1 147523320 147523393 -95140960 - MER63 DNA MER1_type -87 749 676 1629 272 37 12 chr1 147524416 147525059 -95139294 + L1ME2 LINE L1 2451 3109 -3037 * 8480 187 9 12 chr1 147525048 147527701 -95136652 + L1PA16 LINE L1 3418 6057 -109 2100 269 84 33 chr1 147527704 147529301 -95135052 + L1ME2 LINE L1 4000 5673 -493 527 239 43 0 chr1 147529312 147529429 -95134924 + FLAM_A SINE Alu 6 127 -15 548 218 138 11 chr1 147529444 147529657 -95134696 + L1ME2 LINE L1 5657 5894 -270 1758 257 77 30 chr1 147529688 147530802 -95133551 - L1MEc LINE L1 -2938 3277 2113 963 265 39 0 chr1 147530806 147531036 -95133317 + Tigger5 DNA MER2_type 1 239 -2084 479 225 0 0 chr1 147531023 147531112 -95133241 + Tigger5 DNA MER2_type 2235 2323 0 * 1191 302 60 27 chr1 147531113 147531382 -95132971 - L1MEc LINE L1 -4267 2129 1870 195 42 0 0 chr1 147531382 147531406 -95132947 + (TA)n Simple_repeat Simple_repeat 1 24 0 1191 302 60 27 chr1 147531406 147531708 -95132645 - L1MEc LINE L1 -4526 1870 1522 3740 114 9 0 chr1 147531708 147532253 -95132100 + MER41A LTR ERV1 2 551 -3 1191 302 60 27 chr1 147532253 147532487 -95131866 - L1MEc LINE L1 -4874 1522 1297 * 2945 246 34 20 chr1 147532476 147533336 -95131017 + L1MC2 LINE L1 1 824 -5221 2081 230 21 48 chr1 147533336 147533896 -95130457 + LTR27 LTR ERV1 3 547 -89 493 259 7 48 chr1 147533896 147534043 -95130310 + LTR27 LTR ERV1 494 634 -2 2462 219 82 9 chr1 147534048 147534849 -95129504 + L1MC2 LINE L1 821 1700 -4851 4528 177 60 20 chr1 147534853 147535160 -95129193 + L1MC2 LINE L1 5699 5992 -770 2522 56 0 0 chr1 147535160 147535462 -95128891 - AluY SINE Alu -9 302 1 4528 177 60 20 chr1 147535462 147536017 -95128336 + L1MC2 LINE L1 5992 6609 -153 1702 161 11 4 chr1 147536017 147536291 -95128062 + AluJo SINE Alu 1 276 -36 4528 177 60 20 chr1 147536291 147536421 -95127932 + L1MC2 LINE L1 6609 6732 -30 265 232 42 53 chr1 147536546 147536641 -95127712 - L1MEc LINE L1 -5805 591 498 206 261 14 14 chr1 147536762 147536831 -95127522 + (TTTG)n Simple_repeat Simple_repeat 4 72 0 302 377 27 0 chr1 147536881 147537027 -95127326 - L1MEc LINE L1 -6106 290 141 1774 131 50 21 chr1 147537582 147537865 -95126488 - AluSx SINE Alu -21 291 1 268 348 17 0 chr1 147538386 147538501 -95125852 + L2 LINE L2 3179 3295 -18 609 190 50 124 chr1 147538544 147538786 -95125567 - MER2 DNA MER2_type -25 320 97 6524 99 12 9 chr1 147538868 147540646 -95123707 + L1PA6 LINE L1 57 1828 -4326 3382 43 5 0 chr1 147540646 147541060 -95123293 + L1PA4 LINE L1 5740 6155 0 6524 99 12 9 chr1 147541060 147545299 -95119054 + L1PA6 LINE L1 1828 6148 -6 2749 19 0 6 chr1 147545345 147545658 -95118695 - AluY SINE Alu 0 311 1 278 309 39 44 chr1 147545958 147546139 -95118214 + MER5A DNA MER1_type 10 189 0 26 50 0 0 chr1 147546771 147546811 -95117542 + AT_rich Low_complexity Low_complexity 1 40 0 1668 44 0 5 chr1 147546872 147547077 -95117276 + L1PA5 LINE L1 5938 6141 -13 2928 176 9 55 chr1 147547320 147547360 -95116993 - MLT2B3 LTR ERVL 0 554 514 558 43 0 0 chr1 147547360 147547429 -95116924 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 2928 176 9 55 chr1 147547429 147547969 -95116384 - MLT2B3 LTR ERVL -40 514 1 213 65 0 0 chr1 147548118 147548149 -95116204 + (CA)n Simple_repeat Simple_repeat 2 32 0 235 261 0 15 chr1 147548902 147548967 -95115386 - HAL1 LINE L1 -884 1623 1560 347 295 55 59 chr1 147548987 147549241 -95115112 - MER46C DNA MER2_type -18 320 68 2204 268 60 22 chr1 147549413 147550025 -95114328 - L1PA12 LINE L1 -4577 3004 2354 2580 137 26 16 chr1 147550025 147550455 -95113898 - MER57B LTR ERV1 0 434 1 2204 268 60 22 chr1 147550455 147550622 -95113731 - L1PA12 LINE L1 -5227 2354 2195 1983 115 21 3 chr1 147550880 147551167 -95113186 - AluSp SINE Alu -19 294 3 617 293 68 40 chr1 147551412 147551862 -95112491 - L1PA12 LINE L1 -6397 1188 1 24 0 0 0 chr1 147551940 147551964 -95112389 + AT_rich Low_complexity Low_complexity 1 24 0 415 111 167 0 chr1 147553807 147553879 -95110474 + AluS SINE Alu 1 84 -228 189 0 0 0 chr1 147557506 147557527 -95106826 + (TAA)n Simple_repeat Simple_repeat 2 22 0 214 353 168 12 chr1 147558228 147558395 -95105958 + MIR SINE MIR 11 203 -59 309 231 0 0 chr1 147558941 147559006 -95105347 - MER63 DNA MER1_type -312 749 685 335 293 71 94 chr1 147559116 147559498 -95104855 - L2 LINE L2 -776 2538 2166 225 357 10 10 chr1 147559581 147559679 -95104674 - MIR SINE MIR -63 145 48 29523 39 16 1 chr1 147560549 147566592 -95097761 + L1PA2 LINE L1 1 6170 0 2206 83 7 3 chr1 147567473 147567763 -95096590 - AluY SINE Alu -19 292 2 365 329 132 70 chr1 147567985 147568629 -95095724 + L1MEc LINE L1 852 1535 -5603 264 298 42 53 chr1 147568722 147568984 -95095369 + L1MEc LINE L1 1343 1601 -5258 1968 235 51 24 chr1 147569026 147569707 -95094646 + L1M1 LINE L1 2749 3448 -4117 2954 209 44 42 chr1 147569711 147570266 -95094087 + L1M1 LINE L1 3620 4180 -3385 1480 151 18 55 chr1 147570266 147570576 -95093777 - AluJb SINE Alu 0 320 21 2954 209 44 42 chr1 147570576 147570973 -95093380 + L1M1 LINE L1 4180 4575 -2990 254 317 37 12 chr1 147571003 147571164 -95093189 - L1M4 LINE L1 -3641 2505 2341 358 288 38 12 chr1 147571803 147571963 -95092390 - MER46C DNA MER2_type -6 332 169 566 201 0 6 chr1 147571967 147572126 -95092227 - L1M4 LINE L1 -2974 3172 3015 3438 111 16 4 chr1 147572286 147572791 -95091562 - MER9 LTR ERVK 0 511 1 223 178 0 0 chr1 147573544 147573589 -95090764 + A-rich Low_complexity Low_complexity 1 45 0 2333 88 3 3 chr1 147574637 147574944 -95089409 - AluY SINE Alu -4 307 1 237 362 85 14 chr1 147575474 147575615 -95088738 + L2 LINE L2 3103 3253 -19 905 274 48 43 chr1 147575643 147575686 -95088667 + L1M4 LINE L1 1085 1126 -5077 2112 109 14 3 chr1 147575686 147575980 -95088373 + AluSp SINE Alu 1 297 -16 905 274 48 43 chr1 147575980 147576539 -95087814 + L1M4 LINE L1 1126 1680 -4523 1932 108 20 3 chr1 147576542 147576837 -95087516 - L1PA12 LINE L1 -208 5960 5661 23 54 0 0 chr1 147577016 147577053 -95087300 + AT_rich Low_complexity Low_complexity 1 37 0 224 278 37 65 chr1 147577811 147577919 -95086434 + L2 LINE L2 3148 3252 -20 1194 115 0 0 chr1 147579379 147579562 -95084791 + AluSq SINE Alu 129 311 0 8332 188 26 17 chr1 147579569 147581437 -95082916 + L1M4 LINE L1 3168 5052 -1158 429 252 34 25 chr1 147581436 147581555 -95082798 + L1MA8 LINE L1 14 133 -7432 * 8549 172 7 16 chr1 147581552 147583032 -95081321 + L1MA8 LINE L1 1099 2564 -5001 3444 114 11 13 chr1 147583041 147583575 -95080778 + L1PA13 LINE L1 5623 6155 -8 5477 165 28 21 chr1 147583579 147585741 -95078612 + L1MA8 LINE L1 2749 4924 -2641 2889 200 27 14 chr1 147585741 147585943 -95078410 + L1MA8 LINE L1 7000 7198 -512 231 36 0 0 chr1 147585943 147585971 -95078382 + (TA)n Simple_repeat Simple_repeat 1 28 0 2889 200 27 14 chr1 147585971 147586467 -95077886 + L1MA8 LINE L1 7198 7708 -2 203 303 26 0 chr1 147586998 147587074 -95077279 + L2 LINE L2 3219 3296 -17 22 0 0 0 chr1 147587448 147587470 -95076883 + AT_rich Low_complexity Low_complexity 1 22 0 724 205 73 0 chr1 147588128 147588279 -95076074 - FAM SINE Alu -13 162 1 362 262 109 14 chr1 147589022 147589307 -95075046 + L1M4 LINE L1 5178 5481 -743 236 250 143 36 chr1 147590059 147590143 -95074210 - MIR SINE MIR -97 111 19 24 32 0 0 chr1 147590180 147590211 -95074142 + AT_rich Low_complexity Low_complexity 1 31 0 583 291 73 58 chr1 147590323 147590650 -95073703 + L2 LINE L2 2967 3298 -15 2184 133 30 14 chr1 147591241 147591608 -95072745 + THE1C LTR MaLR 3 375 0 9612 125 41 7 chr1 147591609 147593084 -95071269 + THE1C-int LTR MaLR 17 1542 -38 2260 144 11 14 chr1 147593084 147593446 -95070907 + THE1C LTR MaLR 15 375 0 1038 204 127 47 chr1 147594309 147594647 -95069706 + MLT1A1 LTR MaLR 1 365 0 184 341 53 53 chr1 147595798 147595968 -95068385 - L2 LINE L2 -534 2780 2611 222 341 23 11 chr1 147595972 147596060 -95068293 + MIR SINE MIR 19 107 -155 631 199 105 23 chr1 147596065 147596236 -95068117 + MLT1A2 LTR MaLR 1 185 -189 303 49 0 0 chr1 147596239 147596280 -95068073 + (TC)n Simple_repeat Simple_repeat 2 42 0 261 0 0 0 chr1 147596280 147596309 -95068044 + (CA)n Simple_repeat Simple_repeat 1 29 0 736 205 44 160 chr1 147596312 147596537 -95067816 + MLT1A2 LTR MaLR 173 374 0 198 279 108 45 chr1 147596541 147596652 -95067701 + MIR SINE MIR 129 246 -16 270 0 0 0 chr1 147597097 147597127 -95067226 + (ATG)n Simple_repeat Simple_repeat 2 31 0 1918 105 0 0 chr1 147597144 147597391 -95066962 - AluSg SINE Alu -26 284 38 281 226 0 0 chr1 147597469 147597522 -95066831 - MER63 DNA MER1_type -108 728 676 1003 228 196 0 chr1 147597528 147597988 -95066365 - L1MCb LINE L1 -4009 2555 2006 1970 224 52 63 chr1 147597988 147598346 -95066007 - L1MCb LINE L1 -4762 1802 1441 1544 225 59 82 chr1 147598346 147598972 -95065381 + LTR9 LTR ERV1 1 612 0 1970 224 52 63 chr1 147598972 147599671 -95064682 - L1MCb LINE L1 -5123 1441 733 423 286 129 33 chr1 147599668 147600157 -95064196 + L1M4 LINE L1 3237 3772 -2374 * 293 274 13 51 chr1 147600282 147600439 -95063914 + L1M4 LINE L1 3700 3850 -2296 2142 158 39 3 chr1 147600723 147601109 -95063244 - MER57A LTR ERV1 -3 400 1 640 333 28 0 chr1 147601208 147601421 -95062932 - MER58A DNA MER1_type -4 220 2 254 254 123 35 chr1 147602152 147602266 -95062087 + MER34B LTR ERV1 1 124 -441 467 254 49 52 chr1 147602349 147602637 -95061716 + MER34B LTR ERV1 279 565 0 376 113 0 84 chr1 147604065 147604136 -95060217 - L1PA16 LINE L1 -326 5840 5776 1533 199 32 0 chr1 147604136 147604442 -95059911 + L1PA16 LINE L1 5838 6163 -3 358 309 24 0 chr1 147605100 147605265 -95059088 + (TA)n Simple_repeat Simple_repeat 2 170 0 30 59 0 0 chr1 147605299 147605350 -95059003 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr1 147605860 147605884 -95058469 + AT_rich Low_complexity Low_complexity 1 24 0 524 296 57 40 chr1 147606072 147606373 -95057980 - MER46C DNA MER2_type -30 308 3 392 271 148 39 chr1 147606392 147606595 -95057758 - HAL1 LINE L1 -966 1541 1317 1722 145 0 25 chr1 147606685 147606967 -95057386 - AluSq SINE Alu -6 307 33 238 291 87 52 chr1 147607039 147607211 -95057142 - L2 LINE L2 -177 3095 2918 2367 28 38 0 chr1 147608037 147608324 -95056029 - L1PA4 LINE L1 -8 6147 5850 3402 39 35 15 chr1 147608324 147608784 -95055569 + L1P LINE L1 3652 4120 -2026 2468 49 7 3 chr1 147609623 147609927 -95054426 + AluY SINE Alu 1 305 -6 23 33 0 0 chr1 147610692 147610722 -95053631 + AT_rich Low_complexity Low_complexity 1 30 0 303 338 113 71 chr1 147611480 147611903 -95052450 + L2 LINE L2 2832 3272 0 2335 98 0 7 chr1 147611910 147612215 -95052138 + AluSx SINE Alu 10 312 0 21 0 0 0 chr1 147616089 147616110 -95048243 + AT_rich Low_complexity Low_complexity 1 21 0 252 332 67 47 chr1 147617761 147617954 -95046399 - MIR SINE MIR -18 244 48 405 0 0 0 chr1 147618507 147618552 -95045801 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 2140 205 39 14 chr1 147619519 147620012 -95044341 - LTR22 LTR ERVK -4 505 1 22056 100 7 2 chr1 147620014 147621341 -95043012 - HERVK22 LTR ERVK -2 6835 5516 3790 23 0 0 chr1 147621341 147621783 -95042570 - L1PA3 LINE L1 0 6155 5714 22056 100 7 2 chr1 147621783 147623621 -95040732 - HERVK22 LTR ERVK -1321 5516 3655 385 94 0 0 chr1 147623620 147623673 -95040680 - HERVK22 LTR ERVK -4292 2545 2493 * 450 150 0 12 chr1 147623665 147623745 -95040608 - HERVK22 LTR ERVK -3930 2907 2829 * 834 181 21 0 chr1 147623744 147623888 -95040465 - HERVK22 LTR ERVK -4364 2473 2327 189 0 0 0 chr1 147624068 147624089 -95040264 + (T)n Simple_repeat Simple_repeat 1 21 0 2232 143 36 8 chr1 147624307 147624699 -95039654 - HERVK22 LTR ERVK -6096 741 339 40675 37 21 1 chr1 147624700 147630730 -95033623 + L1PA2 LINE L1 1 6155 0 26 0 0 0 chr1 147630732 147630758 -95033595 + AT_rich Low_complexity Low_complexity 1 26 0 2311 111 8 17 chr1 147630758 147631109 -95033244 - HERVK22 LTR ERVK -6487 350 3 2011 211 53 20 chr1 147631116 147631605 -95032748 - LTR22 LTR ERVK -4 505 1 25 0 0 0 chr1 147632745 147632770 -95031583 + AT_rich Low_complexity Low_complexity 1 25 0 261 352 47 0 chr1 147633096 147633224 -95031129 - MIR SINE MIR -58 204 71 11226 252 41 22 chr1 147633374 147639086 -95025267 + L1PA15 LINE L1 7 5840 -1744 320 271 98 8 chr1 147639211 147639333 -95025020 - MIR SINE MIR -30 232 100 4254 169 15 4 chr1 147639367 147641024 -95023329 + L1PA15 LINE L1 5890 7604 -6 1231 131 0 11 chr1 147642264 147642455 -95021898 - L1PB4 LINE L1 -16 6140 5952 282 148 19 0 chr1 147642457 147642511 -95021842 + U2 snRNA snRNA 1 55 -133 212 347 51 23 chr1 147642741 147642917 -95021436 - MIR SINE MIR -15 247 67 21 36 0 0 chr1 147643929 147643957 -95020396 + AT_rich Low_complexity Low_complexity 1 28 0 221 319 122 27 chr1 147644638 147644826 -95019527 + L2 LINE L2 2936 3141 -172 354 45 0 0 chr1 147645471 147645515 -95018838 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr1 147647209 147647237 -95017116 + AT_rich Low_complexity Low_complexity 1 28 0 287 293 37 0 chr1 147647613 147647695 -95016658 - L2 LINE L2 -919 2395 2311 256 115 0 33 chr1 147648805 147648866 -95015487 + (TA)n Simple_repeat Simple_repeat 1 59 0 362 351 30 0 chr1 147649147 147649278 -95015075 + MER91A DNA MER1_type 26 160 -36 207 361 28 19 chr1 147649633 147649741 -95014612 - MIR SINE MIR -71 191 83 276 270 45 0 chr1 147649860 147649971 -95014382 + L1MCc LINE L1 25 140 -6283 241 330 51 42 chr1 147650256 147650374 -95013979 - MIR3 SINE MIR -16 192 74 2325 176 24 54 chr1 147651081 147651654 -95012699 - L1MB1 LINE L1 -1 6167 5612 1909 173 3 6 chr1 147651660 147652001 -95012352 - L1PA15 LINE L1 -1 6815 6476 4193 75 31 15 chr1 147652001 147653019 -95011334 + MER11A LTR ERVK 2 1266 0 1342 135 24 66 chr1 147653019 147653157 -95011196 - L1PA15 LINE L1 -335 6482 6361 1898 135 0 4 chr1 147653157 147653438 -95010915 + AluSq SINE Alu 34 313 0 1342 135 24 66 chr1 147653438 147653588 -95010765 - L1PA15 LINE L1 -456 6361 6206 344 259 0 0 chr1 147653586 147653671 -95010682 + L1P LINE L1 4901 4985 -1161 * 13645 233 21 14 chr1 147653679 147658493 -95005860 - L1PA15 LINE L1 -609 6207 1333 924 333 39 13 chr1 147658504 147658892 -95005461 - L1PA15 LINE L1 -6175 612 215 838 155 0 30 chr1 147658894 147659062 -95005291 - L1M3 LINE L1 -728 5606 5444 1509 222 56 13 chr1 147659067 147659738 -95004615 - L1M4 LINE L1 -591 5587 4888 1454 233 40 8 chr1 147659768 147660145 -95004208 + MLT1C LTR MaLR 77 465 -2 2133 212 39 91 chr1 147660146 147660890 -95003463 + MLT1C-int LTR MaLR 4 708 -663 1394 243 31 6 chr1 147660936 147661294 -95003059 + MLT1C-int LTR MaLR 1005 1371 0 1648 263 36 9 chr1 147661301 147661749 -95002604 + MLT1C LTR MaLR 8 467 0 2016 194 21 32 chr1 147662321 147662698 -95001655 - L1MA8 LINE L1 -3 6288 5917 1696 164 59 54 chr1 147662698 147663071 -95001282 + THE1C LTR MaLR 1 375 0 2016 194 21 32 chr1 147663071 147663219 -95001134 - L1MA8 LINE L1 -374 5917 5769 198 0 0 0 chr1 147663240 147663262 -95001091 + (T)n Simple_repeat Simple_repeat 1 22 0 621 130 0 0 chr1 147663439 147663531 -95000822 + AluSg/x SINE Alu 211 302 -8 1932 149 4 0 chr1 147663536 147663841 -95000512 + AluSq SINE Alu 1 306 0 231 36 0 0 chr1 147664154 147664182 -95000171 + (CA)n Simple_repeat Simple_repeat 1 28 0 905 120 0 0 chr1 147664186 147664319 -95000034 - MER49 LTR ERV1 -104 819 687 2299 133 18 10 chr1 147664319 147664709 -94999644 + THE1C-int LTR MaLR 1184 1576 -4 2032 113 62 17 chr1 147664713 147665067 -94999286 + THE1C LTR MaLR 1 370 -5 3747 144 10 55 chr1 147665071 147665471 -94998882 - MER49 LTR ERV1 -232 691 335 6163 181 18 3 chr1 147665471 147666167 -94998186 - L1PA14 LINE L1 -2 6159 5475 2074 146 0 13 chr1 147666167 147666483 -94997870 + AluSx SINE Alu 1 312 0 6163 181 18 3 chr1 147666483 147667810 -94996543 - L1PA14 LINE L1 -686 5475 4128 3747 144 10 55 chr1 147667810 147668124 -94996229 - MER49 LTR ERV1 -588 335 9 2137 61 3 54 chr1 147668541 147668856 -94995497 - AluY SINE Alu 0 300 1 2316 147 18 82 chr1 147669105 147669664 -94994689 - L1MA8 LINE L1 -520 5780 5258 1388 214 19 0 chr1 147669658 147669975 -94994378 + L1MA8 LINE L1 4927 5249 -897 * 647 135 0 10 chr1 147671798 147671902 -94992451 + MSTB LTR MaLR 32 134 -292 264 233 33 0 chr1 147672514 147672604 -94991749 - L1MA10 LINE L1 -1 6333 6241 1114 136 31 0 chr1 147672659 147672850 -94991503 + MSTB LTR MaLR 3 199 -227 387 315 196 19 chr1 147672879 147673190 -94991163 + L1M4 LINE L1 5038 5403 -743 183 253 41 110 chr1 147673559 147673705 -94990648 - MIR SINE MIR -12 250 115 223 342 26 31 chr1 147674102 147674207 -94990146 - MIR SINE MIR -97 111 2 444 285 73 78 chr1 147674373 147674717 -94989636 + L2 LINE L2 2967 3308 -5 2442 49 0 0 chr1 147675588 147675895 -94988458 - AluY SINE Alu 0 307 1 827 189 0 0 chr1 147676122 147676254 -94988099 + FLAM_C SINE Alu 1 132 -1 1896 146 50 0 chr1 147676353 147676634 -94987719 + AluSx SINE Alu 1 295 -17 910 236 132 22 chr1 147676887 147677205 -94987148 + MLT1A1 LTR MaLR 13 365 0 1936 205 23 108 chr1 147678060 147678670 -94985683 - LTR6A LTR ERV1 0 564 1 196 366 14 0 chr1 147679378 147679449 -94984904 + MIR SINE MIR 9 80 -182 798 263 78 25 chr1 147679481 147679762 -94984591 + MLT1A2 LTR MaLR 1 296 -78 685 216 7 7 chr1 147681582 147681735 -94982618 - L1PB4 LINE L1 -2 6154 6002 209 213 0 93 chr1 147682263 147682338 -94982015 + L3b LINE CR1 1279 1346 -237 2142 121 3 7 chr1 147683030 147683327 -94981026 + AluSx SINE Alu 1 296 -16 331 319 15 0 chr1 147683356 147683491 -94980862 + (TA)n Simple_repeat Simple_repeat 1 137 0 21 71 0 0 chr1 147683514 147683556 -94980797 + AT_rich Low_complexity Low_complexity 1 42 0 352 305 38 42 chr1 147684245 147684481 -94979872 - MER46C DNA MER2_type -29 309 75 625 162 0 0 chr1 147684490 147684589 -94979764 - LTR10B LTR ERV1 0 547 449 540 217 46 0 chr1 147684592 147684744 -94979609 - LTR10B LTR ERV1 -199 348 190 260 288 127 24 chr1 147684877 147685082 -94979271 - HAL1 LINE L1 -965 1542 1317 2136 119 10 0 chr1 147685096 147685398 -94978955 - AluY SINE Alu -6 305 1 21 36 0 0 chr1 147685453 147685481 -94978872 + AT_rich Low_complexity Low_complexity 1 28 0 209 339 51 46 chr1 147685532 147685727 -94978626 - L2 LINE L2 -182 3090 2895 194 62 31 0 chr1 147689380 147689412 -94974941 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 2135 135 0 0 chr1 147689521 147689832 -94974521 - AluSx SINE Alu -1 311 1 24 32 0 0 chr1 147691169 147691200 -94973153 + AT_rich Low_complexity Low_complexity 1 31 0 2269 75 14 10 chr1 147691391 147691683 -94972670 - AluSc SINE Alu -16 293 1 243 0 0 0 chr1 147692771 147692798 -94971555 + (TG)n Simple_repeat Simple_repeat 1 27 0 5525 86 3 29 chr1 147693026 147693866 -94970487 - L1PB1 LINE L1 -1 6150 5331 2555 42 0 3 chr1 147693866 147694173 -94970180 - AluY SINE Alu -5 306 1 5525 86 3 29 chr1 147694173 147694203 -94970150 - L1PB1 LINE L1 -820 5331 5302 4306 70 3 0 chr1 147694206 147694781 -94969572 - LTR10C LTR ERV1 -4 587 11 4822 289 53 43 chr1 147694787 147697050 -94967303 - LTR10C-int LTR ERV1 -2 6647 4363 902 149 16 5 chr1 147697235 147697423 -94966930 - LTR10C-int LTR ERV1 -2316 3270 3081 14104 161 73 21 chr1 147697423 147698193 -94966160 - L1PBa LINE L1 -823 6039 5311 2393 99 0 3 chr1 147698193 147698507 -94965846 - AluSq SINE Alu 0 313 1 14104 161 73 21 chr1 147698507 147701586 -94962767 - L1PBa LINE L1 -1551 5311 1803 2294 94 0 3 chr1 147701586 147701885 -94962468 - AluSq SINE Alu -14 299 2 14104 161 73 21 chr1 147701885 147703637 -94960716 - L1PBa LINE L1 -5059 1803 144 214 339 23 46 chr1 147704211 147704341 -94960012 - L2 LINE L2 -562 2752 2626 398 271 99 42 chr1 147705365 147705557 -94958796 - MIR SINE MIR -12 250 48 200 337 91 63 chr1 147706388 147706640 -94957713 + L2 LINE L2 2846 3104 -168 329 322 41 29 chr1 147708058 147708229 -94956124 - MIR SINE MIR -19 243 71 279 355 54 25 chr1 147708248 147708451 -94955902 - MIR SINE MIR -52 210 2 228 371 35 20 chr1 147709808 147710005 -94954348 - MIR SINE MIR -15 247 48 1732 173 0 7 chr1 147710289 147710567 -94953786 - AluJo SINE Alu -36 276 1 2142 121 7 0 chr1 147711247 147711544 -94952809 - AluSx SINE Alu -13 299 1 272 269 81 16 chr1 147711828 147711979 -94952374 + L1ME LINE L1 5515 5676 -494 469 304 98 44 chr1 147715963 147716167 -94948186 - MIR SINE MIR 0 262 48 479 299 98 44 chr1 147720120 147720324 -94944029 - MIR SINE MIR 0 262 48 213 271 167 0 chr1 147725940 147726036 -94938317 + MIR SINE MIR 61 172 -90 21 57 0 0 chr1 147726954 147726989 -94937364 + AT_rich Low_complexity Low_complexity 1 35 0 308 385 85 0 chr1 147727211 147727341 -94937012 + MER91A DNA MER1_type 20 160 -36 274 327 33 67 chr1 147727713 147727863 -94936490 - MIR SINE MIR -72 190 46 2074 129 33 3 chr1 147727951 147728284 -94936069 - MER61A LTR ERV1 0 343 1 5763 95 61 5 chr1 147728284 147729171 -94935182 - MER61A-int LTR ERV1 0 5217 4281 5604 77 2 22 chr1 147729170 147729976 -94934377 - MER61A-int LTR ERV1 -1099 4118 3329 * 2210 112 17 0 chr1 147729977 147730271 -94934082 + AluSx SINE Alu 1 299 -13 1543 175 9 35 chr1 147730280 147730622 -94933731 - MER61A-int LTR ERV1 -4884 333 1 2161 131 27 3 chr1 147730622 147730957 -94933396 - MER61A LTR ERV1 0 343 1 233 29 29 0 chr1 147731155 147731189 -94933164 + (CA)n Simple_repeat Simple_repeat 2 36 0 216 135 0 0 chr1 147731189 147731226 -94933127 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 288 333 41 65 chr1 147731257 147731380 -94932973 - MIR3 SINE MIR -22 186 67 247 180 0 0 chr1 147731989 147732039 -94932314 - L1ME LINE L1 -467 5723 5674 1952 264 42 2 chr1 147732356 147732958 -94931395 - L1ME1 LINE L1 -58 6108 5483 1491 215 75 51 chr1 147732967 147733303 -94931050 - L1ME LINE L1 -567 5668 5342 2190 92 0 39 chr1 147733303 147733609 -94930744 - AluSx SINE Alu -18 294 1 1491 215 75 51 chr1 147733609 147734143 -94930210 - L1ME LINE L1 -893 5342 4797 478 295 5 23 chr1 147734134 147734351 -94930002 - L1ME LINE L1 -4320 2076 1864 * 2321 165 28 7 chr1 147735678 147736102 -94928251 + Tigger2a DNA MER2_type 1 433 -1 2030 134 7 3 chr1 147736364 147736669 -94927684 - AluSq SINE Alu -7 306 1 557 304 154 10 chr1 147738818 147739213 -94925140 + L1ME4a LINE L1 5628 6079 -42 576 300 65 5 chr1 147740037 147740237 -94924116 + LTR16A LTR ERVL 230 441 -9 419 228 37 117 chr1 147740626 147740779 -94923574 + L1ME LINE L1 5368 5532 -632 1809 158 7 24 chr1 147740779 147741077 -94923276 + AluJo SINE Alu 19 311 -1 419 228 37 117 chr1 147741077 147741295 -94923058 + L1ME LINE L1 5532 5724 -440 2320 99 0 7 chr1 147741443 147741747 -94922606 - AluSg SINE Alu -8 302 1 343 348 92 27 chr1 147741748 147742247 -94922106 + L2 LINE L2 2777 3312 -1 507 328 63 38 chr1 147742397 147742684 -94921669 + L3 LINE CR1 1237 1530 -47 2178 125 0 0 chr1 147743407 147743710 -94920643 - AluSq SINE Alu -10 303 1 26 30 0 0 chr1 147745493 147745526 -94918827 + AT_rich Low_complexity Low_complexity 1 33 0 2232 104 0 10 chr1 147745654 147745973 -94918380 + AluSq SINE Alu 1 313 0 361 255 0 10 chr1 147745993 147746095 -94918258 - L1MA10 LINE L1 -1 6333 6233 * 1038 249 35 5 chr1 147746088 147746465 -94917888 - L1M4 LINE L1 -994 5152 4765 1150 358 82 2 chr1 147746467 147747334 -94917019 + L1M4 LINE L1 4215 5150 -996 351 0 0 0 chr1 147747435 147747474 -94916879 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr1 147747510 147747534 -94916819 + (GA)n Simple_repeat Simple_repeat 2 25 0 292 241 130 0 chr1 147747577 147747685 -94916668 + L1M LINE L1 5292 5413 -771 290 304 59 59 chr1 147748994 147749300 -94915053 - MER41E LTR ERV1 -59 453 148 230 307 78 113 chr1 147749707 147749938 -94914415 - L2 LINE L2 0 3272 3050 823 275 108 7 chr1 147749975 147750270 -94914083 + L2 LINE L2 2989 3313 0 722 257 97 71 chr1 147750589 147751375 -94912978 + HAL1 LINE L1 486 1291 -1216 2559 140 28 21 chr1 147751587 147752058 -94912295 - L1MC1 LINE L1 -280 6053 5580 590 174 289 20 chr1 147752351 147752500 -94911853 - MER5A DNA MER1_type 0 189 1 398 234 12 35 chr1 147753689 147753860 -94910493 - L1M4 LINE L1 -2976 3170 3004 * 821 208 35 0 chr1 147753835 147754037 -94910316 + HAL1 LINE L1 1391 1599 -908 910 157 0 58 chr1 147754098 147754270 -94910083 - MLT1A1 LTR MaLR 0 365 204 296 224 14 0 chr1 147754286 147754355 -94909998 - FLAM SINE Alu -4 129 69 1005 187 0 42 chr1 147754382 147754596 -94909757 - MLT1A1 LTR MaLR -155 210 6 327 268 89 36 chr1 147754611 147754723 -94909630 + HAL1 LINE L1 1800 1917 -590 513 211 46 109 chr1 147754827 147755177 -94909176 + HAL1 LINE L1 1993 2320 -187 322 271 57 57 chr1 147755179 147755319 -94909034 + HAL1 LINE L1 2367 2506 -1 212 198 59 99 chr1 147806654 147806755 -94857598 + MIR SINE MIR 76 172 -90 21 57 0 0 chr1 147807673 147807708 -94856645 + AT_rich Low_complexity Low_complexity 1 35 0 298 374 89 0 chr1 147807930 147808053 -94856300 + MER91A DNA MER1_type 20 153 -43 260 327 33 67 chr1 147808432 147808582 -94855771 - MIR SINE MIR -72 190 46 2224 129 33 3 chr1 147808670 147809003 -94855350 - MER61A LTR ERV1 0 343 1 6204 91 61 5 chr1 147809003 147809890 -94854463 - MER61A-int LTR ERV1 0 5217 4281 6040 77 2 22 chr1 147809889 147810695 -94853658 - MER61A-int LTR ERV1 -1099 4118 3329 * 2209 112 17 0 chr1 147810696 147810990 -94853363 + AluSx SINE Alu 1 299 -13 1668 175 9 35 chr1 147810999 147811341 -94853012 - MER61A-int LTR ERV1 -4884 333 1 2311 131 27 3 chr1 147811341 147811676 -94852677 - MER61A LTR ERV1 0 343 1 233 29 29 0 chr1 147811874 147811908 -94852445 + (CA)n Simple_repeat Simple_repeat 2 36 0 216 135 0 0 chr1 147811908 147811945 -94852408 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 279 333 41 65 chr1 147811976 147812099 -94852254 - MIR3 SINE MIR -22 186 67 276 213 93 0 chr1 147812708 147812783 -94851570 - L1ME LINE L1 -467 5654 5573 2195 263 42 2 chr1 147813075 147813677 -94850676 - L1ME1 LINE L1 -58 6108 5483 1767 218 75 50 chr1 147813672 147814022 -94850331 - L1ME LINE L1 -552 5683 5343 * 2198 92 0 39 chr1 147814022 147814328 -94850025 - AluSx SINE Alu -18 294 1 1767 218 75 50 chr1 147814328 147814862 -94849491 - L1ME LINE L1 -892 5343 4797 563 272 14 32 chr1 147814853 147815070 -94849283 - L1ME LINE L1 -4320 2076 1864 * 2529 168 28 7 chr1 147816397 147816821 -94847532 + Tigger2a DNA MER2_type 1 433 -1 2030 134 7 3 chr1 147817083 147817388 -94846965 - AluSq SINE Alu -7 306 1 557 304 154 10 chr1 147819537 147819932 -94844421 + L1ME4a LINE L1 5628 6079 -42 576 300 65 5 chr1 147820756 147820956 -94843397 + LTR16A LTR ERVL 230 441 -9 419 228 37 117 chr1 147821345 147821498 -94842855 + L1ME LINE L1 5368 5532 -632 1809 158 7 24 chr1 147821498 147821796 -94842557 + AluJo SINE Alu 19 311 -1 419 228 37 117 chr1 147821796 147822014 -94842339 + L1ME LINE L1 5532 5724 -440 2320 99 0 7 chr1 147822162 147822466 -94841887 - AluSg SINE Alu -8 302 1 343 348 92 27 chr1 147822467 147822966 -94841387 + L2 LINE L2 2777 3312 -1 507 328 63 38 chr1 147823116 147823403 -94840950 + L3 LINE CR1 1237 1530 -47 2178 125 0 0 chr1 147824126 147824429 -94839924 - AluSq SINE Alu -10 303 1 26 30 0 0 chr1 147826212 147826245 -94838108 + AT_rich Low_complexity Low_complexity 1 33 0 2232 104 0 10 chr1 147826373 147826692 -94837661 + AluSq SINE Alu 1 313 0 361 255 0 10 chr1 147826712 147826814 -94837539 - L1MA10 LINE L1 -1 6333 6233 * 1038 249 35 5 chr1 147826807 147827184 -94837169 - L1M4 LINE L1 -994 5152 4765 1150 358 82 2 chr1 147827186 147828053 -94836300 + L1M4 LINE L1 4215 5150 -996 351 0 0 0 chr1 147828154 147828193 -94836160 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr1 147828229 147828253 -94836100 + (GA)n Simple_repeat Simple_repeat 2 25 0 292 241 130 0 chr1 147828296 147828404 -94835949 + L1M LINE L1 5292 5413 -771 290 304 59 59 chr1 147829713 147830019 -94834334 - MER41E LTR ERV1 -59 453 148 243 303 78 113 chr1 147830426 147830657 -94833696 - L2 LINE L2 0 3272 3050 823 275 108 7 chr1 147830694 147830989 -94833364 + L2 LINE L2 2989 3313 0 709 258 97 71 chr1 147831308 147832094 -94832259 + HAL1 LINE L1 486 1291 -1216 4040 129 61 14 chr1 147832164 147832883 -94831470 - L1MC1 LINE L1 -1 6332 5580 590 174 289 20 chr1 147833176 147833325 -94831028 - MER5A DNA MER1_type 0 189 1 398 234 12 35 chr1 147834514 147834685 -94829668 - L1M4 LINE L1 -2976 3170 3004 * 821 208 35 0 chr1 147834660 147834862 -94829491 + HAL1 LINE L1 1391 1599 -908 910 157 0 58 chr1 147834923 147835095 -94829258 - MLT1A1 LTR MaLR 0 365 204 296 224 14 0 chr1 147835111 147835180 -94829173 - FLAM_A SINE Alu -5 128 68 1005 187 0 42 chr1 147835207 147835421 -94828932 - MLT1A1 LTR MaLR -155 210 6 319 270 90 36 chr1 147835436 147835547 -94828806 + HAL1 LINE L1 1800 1916 -591 527 209 46 109 chr1 147835652 147836002 -94828351 + HAL1 LINE L1 1993 2320 -187 322 271 57 57 chr1 147836004 147836144 -94828209 + HAL1 LINE L1 2367 2506 -1 454 277 82 33 chr1 147836647 147836831 -94827522 - MIR SINE MIR -67 195 3 1740 174 0 10 chr1 147837107 147837395 -94826958 + AluJo SINE Alu 1 285 -27 477 34 0 0 chr1 147837396 147837455 -94826898 + (CA)n Simple_repeat Simple_repeat 2 60 0 261 339 50 46 chr1 147837704 147837922 -94826431 - LTR67 LTR ERVL -264 293 75 864 344 35 19 chr1 147837991 147838477 -94825876 - L2 LINE L2 -834 2480 1987 913 130 124 5 chr1 147838487 147838672 -94825681 + L1MA9 LINE L1 6101 6307 -5 180 299 161 35 chr1 147839062 147839236 -94825117 + L2 LINE L2 2882 3077 -195 282 250 240 50 chr1 147839303 147839503 -94824850 + MIR SINE MIR 25 262 0 226 340 0 0 chr1 147839542 147839595 -94824758 + L2 LINE L2 3136 3188 -84 22 56 0 0 chr1 147840095 147840131 -94824222 + AT_rich Low_complexity Low_complexity 1 36 0 2208 112 7 0 chr1 147840196 147840492 -94823861 - AluSx SINE Alu -14 298 1 2534 132 52 0 chr1 147841181 147841584 -94822769 + MSTC LTR MaLR 5 428 0 638 325 19 10 chr1 147841792 147841998 -94822355 - MIR SINE MIR -43 219 12 971 246 100 28 chr1 147842496 147842886 -94821467 + LTR16A LTR ERVL 25 442 -8 395 263 38 102 chr1 147845235 147845363 -94818990 - MIR SINE MIR -87 175 60 2042 126 0 7 chr1 147845363 147845696 -94818657 + AluSx SINE Alu 1 331 0 395 263 38 102 chr1 147845696 147845752 -94818601 - MIR SINE MIR -202 60 2 2028 113 3 36 chr1 147846302 147846319 -94818034 - AluSc SINE Alu -17 292 276 267 103 0 0 chr1 147846319 147846358 -94817995 + (TA)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr1 147846359 147846384 -94817969 + (GA)n Simple_repeat Simple_repeat 2 26 0 2028 113 3 36 chr1 147846384 147846665 -94817688 - AluSc SINE Alu -32 277 2 25 51 0 0 chr1 147846665 147846704 -94817649 + AT_rich Low_complexity Low_complexity 1 39 0 505 111 0 12 chr1 147846837 147846918 -94817435 - MADE1 DNA Mariner 0 80 1 2232 126 0 3 chr1 147847041 147847350 -94817003 + AluSx SINE Alu 1 308 -4 584 303 75 0 chr1 147848876 147849064 -94815289 + MIR SINE MIR 53 254 -8 24 85 0 0 chr1 147849085 147849144 -94815209 + AT_rich Low_complexity Low_complexity 1 59 0 883 288 13 42 chr1 147850174 147850428 -94813925 + MIR SINE MIR 8 256 -6 291 186 43 14 chr1 147850891 147850961 -94813392 - L2 LINE L2 -41 3272 3201 882 221 9 33 chr1 147850978 147851191 -94813162 - MER3 DNA MER1_type -1 208 1 528 275 124 5 chr1 147851357 147851550 -94812803 - L2 LINE L2 -5 3308 3093 232 340 130 50 chr1 147851572 147852057 -94812296 - L2 LINE L2 -2065 1249 726 210 321 0 12 chr1 147853025 147853106 -94811247 + GA-rich Low_complexity Low_complexity 1 80 0 199 345 83 0 chr1 147853337 147853421 -94810932 + MIR SINE MIR 38 128 -80 1824 111 63 74 chr1 147853696 147854074 -94810279 + THE1C LTR MaLR 1 374 -1 10641 113 26 6 chr1 147854075 147855621 -94808732 + THE1C-int LTR MaLR 1 1578 -2 1965 124 70 25 chr1 147855626 147855982 -94808371 + THE1C LTR MaLR 4 375 0 345 258 72 0 chr1 147856924 147857021 -94807332 + MER3 DNA MER1_type 51 154 -55 1662 173 49 0 chr1 147857029 147857399 -94806954 + MER3 DNA MER1_type 2236 2623 0 426 255 114 13 chr1 147857401 147857550 -94806803 + MIR SINE MIR 32 195 -67 6006 184 217 3 chr1 147857554 147858999 -94805354 - MER52A LTR ERV1 0 1755 1 341 261 144 0 chr1 147859402 147859513 -94804840 + MIR SINE MIR 65 191 -71 285 29 0 0 chr1 147859922 147859956 -94804397 + (TG)n Simple_repeat Simple_repeat 1 34 0 528 291 55 35 chr1 147859991 147860190 -94804163 - L2 LINE L2 -197 3116 2914 9035 173 16 11 chr1 147860196 147862919 -94801434 + L1PB1 LINE L1 3149 5881 -270 692 123 35 0 chr1 147863986 147864100 -94800253 + L1MB5 LINE L1 6057 6174 0 1534 139 18 50 chr1 147864338 147864438 -94799915 + AluSx SINE Alu 35 137 -175 527 0 16 0 chr1 147864438 147864501 -94799852 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 1534 139 18 50 chr1 147864501 147864680 -94799673 + AluSx SINE Alu 137 305 -7 692 304 38 9 chr1 147864726 147865147 -94799206 + L1M4 LINE L1 2156 2588 -3558 219 69 0 0 chr1 147865538 147865567 -94798786 + (TA)n Simple_repeat Simple_repeat 1 29 0 2433 69 0 0 chr1 147865568 147865859 -94798494 - AluY SINE Alu -20 291 1 1608 175 41 0 chr1 147867054 147867323 -94797030 + AluSx SINE Alu 1 280 -32 11201 29 1 0 chr1 147867323 147869462 -94794891 + L1PA4 LINE L1 4015 6155 0 240 59 0 0 chr1 147870370 147870404 -94793949 + (CA)n Simple_repeat Simple_repeat 2 35 0 622 274 86 109 chr1 147870451 147871392 -94792961 - L1MC4 LINE L1 -11 8031 7113 271 239 117 21 chr1 147871495 147871625 -94792728 - MLT1H LTR MaLR 0 573 424 619 262 13 0 chr1 147871749 147871898 -94792455 + MLT1I LTR MaLR 259 409 0 1040 261 37 108 chr1 147871909 147872373 -94791980 - L1MC4 LINE L1 -914 7105 6617 306 87 0 0 chr1 147872392 147872438 -94791915 + (TG)n Simple_repeat Simple_repeat 1 46 0 202 205 0 0 chr1 147872441 147872480 -94791873 + CT-rich Low_complexity Low_complexity 1 39 0 302 294 40 68 chr1 147872627 147872804 -94791549 - L1MC4a LINE L1 -1224 6584 6413 635 314 14 5 chr1 147873516 147873723 -94790630 - MIR SINE MIR -26 236 28 27 0 0 0 chr1 147874554 147874581 -94789772 + AT_rich Low_complexity Low_complexity 1 27 0 459 280 80 56 chr1 147874771 147875021 -94789332 - MLT1J2 LTR MaLR 0 450 195 275 375 8 23 chr1 147875842 147875970 -94788383 - MIR SINE MIR -58 150 25 363 332 118 0 chr1 147876872 147877059 -94787294 + MER58C DNA MER1_type 7 215 0 458 270 75 19 chr1 147878174 147878333 -94786020 + MIR SINE MIR 21 188 -74 2555 56 0 7 chr1 147878981 147879285 -94785068 + AluY SINE Alu 1 302 -9 734 290 92 14 chr1 147879285 147879654 -94784699 + L1ME3A LINE L1 5554 5951 -219 520 82 106 12 chr1 147880017 147880102 -94784251 + MLT1A1 LTR MaLR 1 93 -272 994 137 95 104 chr1 147880247 147880488 -94783865 + MLT1A1 LTR MaLR 112 350 -15 390 268 84 84 chr1 147880519 147880780 -94783573 + L2 LINE L2 3025 3285 -28 270 0 0 0 chr1 147880878 147880908 -94783445 + (CA)n Simple_repeat Simple_repeat 2 31 0 384 345 116 19 chr1 147881112 147881535 -94782818 + L2 LINE L2 946 1409 -1905 806 261 168 37 chr1 147881581 147881987 -94782366 + MLT1C LTR MaLR 6 464 -3 552 242 93 47 chr1 147882086 147882301 -94782052 + MIR SINE MIR 1 225 -37 1440 316 104 35 chr1 147882336 147883418 -94780935 + L2 LINE L2 1568 2739 -575 309 51 0 0 chr1 147883418 147883457 -94780896 + (CA)n Simple_repeat Simple_repeat 1 39 0 1440 316 104 35 chr1 147883457 147883548 -94780805 + L2 LINE L2 2739 2822 -492 461 339 123 34 chr1 147883572 147883864 -94780489 + L2 LINE L2 2954 3271 -1 237 178 0 0 chr1 147883950 147883995 -94780358 + (TA)n Simple_repeat Simple_repeat 2 46 0 1985 97 0 106 chr1 147884672 147885002 -94779351 + AluSq SINE Alu 2 296 -17 530 324 47 42 chr1 147885391 147885752 -94778601 + L2 LINE L2 1234 1596 -1718 258 32 0 0 chr1 147885778 147885809 -94778544 + (TC)n Simple_repeat Simple_repeat 2 32 0 446 238 30 0 chr1 147885878 147885979 -94778374 + L1MC5 LINE L1 7798 7901 -60 1874 327 92 34 chr1 147886018 147887154 -94777199 + L2 LINE L2 1699 2959 -313 2206 112 3 0 chr1 147887154 147887458 -94776895 + AluSx SINE Alu 1 305 -7 1874 327 92 34 chr1 147887458 147887792 -94776561 + L2 LINE L2 2959 3272 0 208 266 86 55 chr1 147889003 147889131 -94775222 - MIR SINE MIR -123 139 8 182 245 163 20 chr1 147889645 147889743 -94774610 + L2 LINE L2 2666 2777 -537 1779 263 98 37 chr1 147889762 147889979 -94774374 + MER20B DNA MER1_type 1 203 -580 2355 99 0 0 chr1 147889979 147890283 -94774070 + AluSx SINE Alu 1 304 -8 1779 263 98 37 chr1 147890283 147890798 -94773555 + MER20B DNA MER1_type 203 778 -5 1008 256 144 33 chr1 147890801 147891260 -94773093 + L2 LINE L2 2802 3313 0 204 273 216 0 chr1 147891359 147891447 -94772906 - L2 LINE L2 0 3313 3207 369 159 0 14 chr1 147894218 147894287 -94770066 - tRNA-Arg-AGA tRNA tRNA -6 70 3 233 200 0 50 chr1 147894964 147895024 -94769329 + (TG)n Simple_repeat Simple_repeat 1 57 0 440 309 106 18 chr1 147895277 147895552 -94768801 - L3b LINE CR1 -82 1501 1203 378 0 0 0 chr1 147896186 147896228 -94768125 + (CA)n Simple_repeat Simple_repeat 2 43 0 181 244 122 73 chr1 147896383 147896465 -94767888 - L2 LINE L2 -32 3240 3155 218 304 51 0 chr1 147896617 147896696 -94767657 + MIR SINE MIR 72 154 -108 2269 107 0 10 chr1 147898422 147898722 -94765631 + AluSc SINE Alu 1 297 -12 253 325 60 26 chr1 147900514 147900631 -94763722 - MIR SINE MIR -67 141 21 292 357 0 18 chr1 147900926 147901038 -94763315 - MIR SINE MIR -78 130 21 420 213 11 0 chr1 147901089 147901183 -94763170 - L1MA8 LINE L1 -3 6288 6194 787 122 32 0 chr1 147901183 147901306 -94763047 + L1M2 LINE L1 5562 5688 -612 12782 79 10 1 chr1 147901326 147903722 -94760631 - L1PA7 LINE L1 -2 6152 3735 2318 95 0 3 chr1 147904275 147904569 -94759784 + AluSg SINE Alu 1 293 -17 396 315 94 31 chr1 147904734 147904988 -94759365 + L2 LINE L2 1865 2134 -1180 332 257 0 30 chr1 147905077 147905178 -94759175 - MER112 DNA MER1_type -97 163 66 424 283 49 81 chr1 147905213 147905476 -94758877 + L2 LINE L2 2143 2396 -918 2262 97 7 0 chr1 147905476 147905774 -94758579 - AluSx SINE Alu -12 300 1 424 283 49 81 chr1 147905774 147905818 -94758535 + L2 LINE L2 2396 2440 -874 369 0 0 0 chr1 147906150 147906191 -94758162 + (TG)n Simple_repeat Simple_repeat 2 42 0 465 360 125 14 chr1 147906210 147906563 -94757790 - L2 LINE L2 -357 2957 2566 234 91 0 0 chr1 147906817 147906850 -94757503 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 14148 57 8 3 chr1 147906852 147909344 -94755009 - L1PA6 LINE L1 -5 6149 3647 216 277 0 0 chr1 147909952 147909999 -94754354 + L2 LINE L2 3262 3308 -5 1512 203 50 18 chr1 147910279 147910619 -94753734 + MLT1A1 LTR MaLR 15 365 0 22 0 0 0 chr1 147910886 147910908 -94753445 + AT_rich Low_complexity Low_complexity 1 22 0 642 198 71 60 chr1 147911042 147911224 -94753129 - MIR SINE MIR -10 252 69 1351 305 51 43 chr1 147911273 147912691 -94751662 - L1MC4a LINE L1 -747 5399 4533 444 204 0 106 chr1 147913135 147913248 -94751105 + MER8 DNA MER2_type 1 101 -138 520 108 0 27 chr1 147913368 147913442 -94750911 - Tigger2a DNA MER2_type -361 73 2 242 257 89 0 chr1 147913598 147913699 -94750654 + L3b LINE CR1 1178 1287 -296 261 369 167 10 chr1 147914001 147914199 -94750154 - MIR SINE MIR -31 231 3 397 310 121 17 chr1 147914745 147914984 -94749369 + L3b LINE CR1 1122 1385 -198 411 336 83 54 chr1 147915037 147915388 -94748965 - L2 LINE L2 -12 3260 2900 181 0 69 0 chr1 147915390 147915419 -94748934 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 568 225 130 20 chr1 147915844 147916044 -94748309 + MIR SINE MIR 32 253 -9 564 147 84 0 chr1 147916465 147916560 -94747793 - MER81 DNA DNA 0 114 12 300 325 43 8 chr1 147916809 147916926 -94747427 + L2 LINE L2 2659 2779 -535 343 329 146 32 chr1 147916966 147917246 -94747107 + L2 LINE L2 2910 3221 -51 2025 129 3 3 chr1 147917597 147917883 -94746470 + AluSx SINE Alu 2 287 -25 228 178 27 27 chr1 147917893 147917966 -94746387 + (TAAA)n Simple_repeat Simple_repeat 3 75 0 682 291 55 15 chr1 147918094 147918365 -94745988 + MARNA DNA Mariner 137 418 -168 370 345 69 64 chr1 147918580 147918989 -94745364 - L2 LINE L2 -19 3253 2840 583 329 29 21 chr1 147919400 147919640 -94744713 + MIR SINE MIR 8 249 -13 21 36 0 0 chr1 147919858 147919886 -94744467 + AT_rich Low_complexity Low_complexity 1 28 0 224 351 153 35 chr1 147920098 147920300 -94744053 + MIR SINE MIR 22 247 -15 549 290 7 0 chr1 147921419 147921564 -94742789 + MIR3 SINE MIR 63 208 0 188 143 0 0 chr1 147921955 147921983 -94742370 + MIR3 SINE MIR 156 183 -25 180 341 37 0 chr1 147922750 147922832 -94741521 - L3 LINE CR1 0 1577 1493 * 359 309 52 7 chr1 147922827 147922963 -94741390 + MIR3 SINE MIR 67 208 0 241 282 0 0 chr1 147924745 147924830 -94739523 + (TG)n Simple_repeat Simple_repeat 2 86 0 1870 184 36 0 chr1 147930518 147930850 -94733503 + MER2 DNA MER2_type 1 344 0 555 156 0 0 chr1 147931069 147931159 -94733194 + 5S rRNA rRNA 1 90 -31 381 58 0 0 chr1 147934643 147934695 -94729658 + (CA)n Simple_repeat Simple_repeat 1 52 0 524 261 28 0 chr1 147935052 147935194 -94729159 + MIR3 SINE MIR 63 208 0 249 33 0 0 chr1 147937030 147937060 -94727293 + (CAT)n Simple_repeat Simple_repeat 3 32 0 310 193 0 0 chr1 147937360 147937417 -94726936 - L2 LINE L2 0 3313 3257 184 302 162 40 chr1 147938030 147938252 -94726101 + MIR SINE MIR 1 249 -13 266 353 77 56 chr1 147938394 147938946 -94725407 - L2 LINE L2 0 3272 2715 271 300 31 69 chr1 147939826 147939956 -94724397 - L2 LINE L2 -27 3286 3162 367 237 34 25 chr1 147940829 147940947 -94723406 + C-rich Low_complexity Low_complexity 5 123 0 324 283 175 31 chr1 147941738 147941899 -94722454 + MIR SINE MIR 16 190 -63 482 304 72 22 chr1 147941948 147942129 -94722224 + MIR3 SINE MIR 10 199 -9 393 300 88 24 chr1 147942983 147943153 -94721200 + MIR3 SINE MIR 21 201 -7 207 0 0 0 chr1 147943740 147943763 -94720590 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 346 284 52 45 chr1 147945486 147945620 -94718733 + MIR SINE MIR 49 183 -79 944 217 15 0 chr1 147946782 147946980 -94717373 - MER58A DNA MER1_type -3 221 21 410 373 25 0 chr1 147947059 147947220 -94717133 + MIR3 SINE MIR 41 205 -3 319 308 238 7 chr1 147947765 147947908 -94716445 + MIR SINE MIR 37 212 -50 189 299 0 45 chr1 147948610 147948677 -94715676 - L2 LINE L2 -1 3312 3249 530 177 7 27 chr1 147951905 147952052 -94712301 + GA-rich Low_complexity Low_complexity 4 147 0 224 306 62 0 chr1 147952806 147952950 -94711403 + CT-rich Low_complexity Low_complexity 2 154 0 336 188 0 0 chr1 147953077 147953146 -94711207 + (CA)n Simple_repeat Simple_repeat 1 69 0 344 155 14 0 chr1 147954643 147954714 -94709639 + (TG)n Simple_repeat Simple_repeat 1 72 0 206 313 12 50 chr1 147957651 147957731 -94706622 + polypyrimidine Low_complexity Low_complexity 3 79 0 258 32 0 0 chr1 147959626 147959657 -94704696 + (TG)n Simple_repeat Simple_repeat 2 32 0 206 225 0 0 chr1 147960662 147960702 -94703651 + GA-rich Low_complexity Low_complexity 1 40 0 2405 78 3 13 chr1 147962181 147962488 -94701865 - AluSx SINE Alu -7 305 2 886 49 0 0 chr1 147962741 147962843 -94701510 + AluY SINE Alu 199 300 -11 498 348 34 25 chr1 147963233 147963558 -94700795 + L2 LINE L2 2852 3179 -134 207 0 0 0 chr1 147964515 147964538 -94699815 + (TTCC)n Simple_repeat Simple_repeat 4 26 0 1246 264 69 95 chr1 147965144 147965495 -94698858 + L3 LINE CR1 783 1109 -468 1693 197 3 0 chr1 147965495 147965613 -94698740 + AluJb SINE Alu 1 117 -195 369 0 0 0 chr1 147965613 147965654 -94698699 + (CA)n Simple_repeat Simple_repeat 2 42 0 1693 197 3 0 chr1 147965654 147965834 -94698519 + AluJb SINE Alu 117 300 -12 1246 264 69 95 chr1 147965834 147966153 -94698200 + L3 LINE CR1 1109 1435 -142 279 340 32 43 chr1 147966175 147966360 -94697993 - L2 LINE L2 -15 3298 3116 235 321 18 37 chr1 147966426 147966535 -94697818 + L3 LINE CR1 1425 1531 -46 182 271 0 71 chr1 147967409 147967479 -94696874 + MIR SINE MIR 156 220 -42 474 260 175 19 chr1 147968111 147968265 -94696088 + MER5A DNA MER1_type 10 187 -2 2060 99 11 0 chr1 147968522 147968795 -94695558 + AluSx SINE Alu 1 276 -36 180 0 0 0 chr1 147968801 147968821 -94695532 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 389 333 59 79 chr1 147969846 147970302 -94694051 + L2 LINE L2 2815 3261 -11 262 247 27 130 chr1 147970364 147970510 -94693843 - MIR SINE MIR -63 145 15 26 0 0 0 chr1 147970642 147970668 -94693685 + AT_rich Low_complexity Low_complexity 1 26 0 2290 108 0 3 chr1 147970671 147970978 -94693375 - AluSx SINE Alu -6 306 1 29 0 0 0 chr1 147972417 147972446 -94691907 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 147972540 147972590 -94691763 + AT_rich Low_complexity Low_complexity 1 50 0 1765 158 63 6 chr1 147972608 147972943 -94691410 - MLT1A1 LTR MaLR 0 365 12 533 300 159 9 chr1 147972948 147973168 -94691185 + MIR SINE MIR 5 257 -5 184 349 0 16 chr1 147973207 147973260 -94691093 - L3b LINE CR1 0 1583 1532 192 323 0 97 chr1 147973260 147973353 -94691000 + MER5C DNA MER1_type 1 84 -240 316 203 31 0 chr1 147973622 147973686 -94690667 - L3 LINE CR1 -267 1310 1245 2021 123 3 31 chr1 147973893 147974211 -94690142 - AluSq SINE Alu -4 309 1 394 320 39 45 chr1 147974227 147974405 -94689948 - L3 LINE CR1 -369 1208 1032 852 318 0 4 chr1 147974873 147975112 -94689241 + MIR SINE MIR 8 245 -17 30 0 0 0 chr1 147975952 147975982 -94688371 + AT_rich Low_complexity Low_complexity 1 30 0 2347 104 0 3 chr1 147976252 147976598 -94687755 - AluSx SINE Alu 0 312 1 392 307 38 105 chr1 147976816 147977054 -94687299 - L2 LINE L2 -13 3259 3038 311 333 125 57 chr1 147978002 147978426 -94685927 - L2 LINE L2 -403 2911 2459 181 237 53 0 chr1 147978449 147978487 -94685866 + L2 LINE L2 3259 3298 -15 376 237 246 9 chr1 147978554 147978668 -94685685 + MIR3 SINE MIR 51 191 -17 307 252 76 61 chr1 147979496 147979627 -94684726 + MIR3 SINE MIR 4 136 -72 826 274 61 16 chr1 147979695 147979940 -94684413 - MIR SINE MIR -5 257 2 301 290 62 20 chr1 147980166 147980313 -94684040 - MIR3 SINE MIR -1 207 59 236 343 212 0 chr1 147980750 147980849 -94683504 + L2 LINE L2 3134 3253 -19 198 0 0 0 chr1 147981513 147981535 -94682818 + (TAA)n Simple_repeat Simple_repeat 2 23 0 393 366 62 18 chr1 147983058 147983282 -94681071 - MIR SINE MIR -12 250 17 230 277 0 15 chr1 147983332 147983397 -94680956 - L2 LINE L2 -78 3235 3172 238 327 58 19 chr1 147983575 147983679 -94680674 + L3 LINE CR1 1161 1268 -309 212 227 0 0 chr1 147983717 147983761 -94680592 - L2 LINE L2 -27 3286 3243 310 336 19 52 chr1 147984000 147984157 -94680196 + MIR SINE MIR 1 151 -64 308 261 130 95 chr1 147984413 147984612 -94679741 - MLT1K LTR MaLR -64 524 305 2503 56 0 0 chr1 147984612 147984917 -94679436 - AluY SINE Alu -6 305 1 308 261 130 95 chr1 147984917 147985085 -94679268 - MLT1K LTR MaLR -283 305 144 4154 211 68 78 chr1 147985462 147985575 -94678778 + Zaphod DNA AcHobo 1 114 -3917 2205 117 0 10 chr1 147985575 147985913 -94678440 + AluSx SINE Alu 1 312 0 4154 211 68 78 chr1 147985913 147986062 -94678291 + Zaphod DNA AcHobo 114 263 -3768 1040 102 0 6 chr1 147986062 147986229 -94678124 + L1MA5 LINE L1 6134 6299 -1 4154 211 68 78 chr1 147986229 147987323 -94677030 + Zaphod DNA AcHobo 263 1342 -2689 7000 55 11 0 chr1 147987323 147988803 -94675550 - L1PA6 LINE L1 -1 6153 4668 4154 211 68 78 chr1 147988803 147989043 -94675310 + Zaphod DNA AcHobo 1342 1583 -2448 3125 176 51 107 chr1 147989052 147989512 -94674841 + Zaphod DNA AcHobo 2480 2964 -1067 2315 123 0 3 chr1 147989512 147989821 -94674532 + AluSg SINE Alu 1 308 -2 3125 176 51 107 chr1 147989821 147990493 -94673860 + Zaphod DNA AcHobo 2964 3549 -482 1042 189 8 157 chr1 147990494 147990636 -94673717 + AluYb8 SINE Alu 1 56 -262 2195 104 0 3 chr1 147990636 147990933 -94673420 + AluSg SINE Alu 1 296 -14 1042 189 8 157 chr1 147990933 147991160 -94673193 + AluYb8 SINE Alu 56 315 -3 1281 230 71 16 chr1 147991160 147991608 -94672745 + Zaphod DNA AcHobo 3551 4023 -8 336 92 231 0 chr1 147993130 147993195 -94671158 + MADE1 DNA Mariner 1 80 0 417 314 67 90 chr1 147993274 147993650 -94670703 + L2 LINE L2 2600 2966 -348 12925 215 43 25 chr1 147993923 147994297 -94670056 - L1MA7 LINE L1 -11 6484 6118 243 0 0 0 chr1 147994297 147994324 -94670029 + (TG)n Simple_repeat Simple_repeat 2 28 0 12925 215 43 25 chr1 147994324 147995820 -94668533 - L1MA7 LINE L1 -377 6118 4650 1896 132 0 0 chr1 147995820 147996078 -94668275 - AluSg SINE Alu -18 292 35 12925 215 43 25 chr1 147996078 148000275 -94664078 - L1MA7 LINE L1 -1845 4650 3 2400 136 29 26 chr1 148001054 148001472 -94662881 + MSTB LTR MaLR 8 426 0 3638 209 64 140 chr1 148001521 148003438 -94660915 + L1MCa LINE L1 3 2052 -4512 11798 168 59 22 chr1 148003442 148004283 -94660070 + L1PA12 LINE L1 4 813 -6771 1971 125 0 14 chr1 148004283 148004607 -94659746 - AluSx SINE Alu 0 320 1 11798 168 59 22 chr1 148004607 148006070 -94658283 + L1PA12 LINE L1 813 2221 -5363 1845 100 0 32 chr1 148006070 148006350 -94658003 + L1PA12 LINE L1 5898 6168 0 11798 168 59 22 chr1 148006350 148007069 -94657284 + L1PA12 LINE L1 2221 2912 -4672 1955 155 10 7 chr1 148007069 148007373 -94656980 + AluSx SINE Alu 1 305 -7 11798 168 59 22 chr1 148007373 148007910 -94656443 + L1PA12 LINE L1 2912 4158 -3426 373 19 0 0 chr1 148007903 148007955 -94656398 + L1P LINE L1 4569 4620 -2964 * 13001 140 34 11 chr1 148007955 148010258 -94654095 - Tigger1 DNA MER2_type -62 2356 1 240 337 42 11 chr1 148011065 148011160 -94653193 - MIR3 SINE MIR -107 101 4 21 0 0 0 chr1 148011458 148011479 -94652874 + AT_rich Low_complexity Low_complexity 1 21 0 4004 35 0 4 chr1 148011479 148011959 -94652394 - L1PA3 LINE L1 -1 6154 5677 2299 47 29 0 chr1 148012119 148012428 -94651925 - AluY SINE Alu 0 317 1 22 35 0 0 chr1 148013315 148013344 -94651009 + AT_rich Low_complexity Low_complexity 1 29 0 4287 189 32 26 chr1 148013437 148014752 -94649601 + L1MB4 LINE L1 4848 6179 -1 272 188 0 29 chr1 148014756 148014825 -94649528 + L1MC4 LINE L1 7975 8041 -1 425 271 36 7 chr1 148016062 148016203 -94648150 - MIR SINE MIR -68 140 8 3994 189 43 32 chr1 148016241 148016751 -94647602 - L1MA9 LINE L1 -38 6274 5771 186 43 0 0 chr1 148016751 148016774 -94647579 + (TG)n Simple_repeat Simple_repeat 2 24 0 3994 189 43 32 chr1 148016774 148017495 -94646858 - L1MA9 LINE L1 -541 5771 5031 * 6395 19 5 0 chr1 148017494 148018274 -94646079 - L1PA4 LINE L1 0 6155 5372 688 192 19 6 chr1 148018249 148018405 -94645948 - L1MA9 LINE L1 -1082 5064 4907 * 403 228 21 69 chr1 148018713 148018858 -94645495 - MIR SINE MIR -65 197 60 332 48 0 0 chr1 148019860 148019902 -94644451 + MER4E LTR ERV1 653 694 -72 36 70 0 0 chr1 148019975 148020046 -94644307 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr1 148020414 148020435 -94643918 + AT_rich Low_complexity Low_complexity 1 21 0 1229 230 62 97 chr1 148021408 148021904 -94642449 - MLT1F1 LTR MaLR -2 565 87 26841 120 10 10 chr1 148021908 148027319 -94637034 + L1PA8 LINE L1 764 6172 0 309 311 34 68 chr1 148027626 148027774 -94636579 + MIR SINE MIR 50 192 -70 21 0 0 0 chr1 148027813 148027834 -94636519 + AT_rich Low_complexity Low_complexity 1 21 0 185 276 35 17 chr1 148030488 148030546 -94633807 - L3b LINE CR1 -353 1230 1172 201 223 234 0 chr1 148033578 148033672 -94630681 - MIR SINE MIR -56 206 91 386 326 110 0 chr1 148033915 148034142 -94630211 + L1ME4a LINE L1 5607 5858 -263 212 191 0 21 chr1 148034199 148034246 -94630107 + A-rich Low_complexity Low_complexity 5 50 0 225 0 0 0 chr1 148034340 148034365 -94629988 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 24 77 0 0 chr1 148034416 148034468 -94629885 + AT_rich Low_complexity Low_complexity 1 52 0 231 385 22 0 chr1 148035272 148035363 -94628990 - L3 LINE CR1 -83 1494 1402 322 294 67 39 chr1 148035574 148035754 -94628599 - L1MC4a LINE L1 -1852 5956 5772 207 363 134 11 chr1 148035764 148035943 -94628410 - L3 LINE CR1 -164 1413 1213 305 245 99 63 chr1 148037133 148037386 -94626967 - L1ME4a LINE L1 0 6121 5860 514 211 0 115 chr1 148037702 148037858 -94626495 - MER20 DNA MER1_type -56 163 26 314 232 32 21 chr1 148037941 148038036 -94626317 - L1MC5 LINE L1 -555 7406 7311 245 182 34 45 chr1 148038041 148038129 -94626224 + (CTATA)n Simple_repeat Simple_repeat 4 90 0 27 0 0 0 chr1 148038161 148038188 -94626165 + AT_rich Low_complexity Low_complexity 1 27 0 755 144 81 6 chr1 148038202 148038376 -94625977 + MER53 DNA DNA 3 189 0 275 127 0 16 chr1 148038427 148038490 -94625863 + L1MA7 LINE L1 6230 6291 0 1984 117 0 18 chr1 148038496 148038779 -94625574 + AluSx SINE Alu 3 280 -32 243 0 0 0 chr1 148038783 148038810 -94625543 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 322 269 62 55 chr1 148038909 148038932 -94625421 - L1MC5 LINE L1 -742 7219 7198 2502 52 0 0 chr1 148038932 148039223 -94625130 - AluY SINE Alu -20 291 1 322 269 62 55 chr1 148039223 148039344 -94625009 - L1MC5 LINE L1 -763 7198 7074 456 180 30 6 chr1 148040201 148040368 -94623985 + (TA)n Simple_repeat Simple_repeat 2 172 0 370 291 42 24 chr1 148040916 148041081 -94623272 + L2 LINE L2 1895 2062 -1252 189 364 45 52 chr1 148041431 148041585 -94622768 + MIR3 SINE MIR 41 193 -15 28 48 0 0 chr1 148042242 148042284 -94622069 + AT_rich Low_complexity Low_complexity 1 42 0 498 253 253 0 chr1 148043182 148043352 -94621001 + MIR SINE MIR 40 252 -10 1263 337 90 35 chr1 148044170 148045155 -94619198 + L2 LINE L2 1570 2608 -706 2530 153 9 7 chr1 148045284 148045709 -94618644 + MSTC LTR MaLR 3 428 0 303 28 0 0 chr1 148045763 148045799 -94618554 + (TG)n Simple_repeat Simple_repeat 1 36 0 312 325 35 24 chr1 148045799 148045968 -94618385 + L2 LINE L2 2723 2893 -421 3493 32 0 0 chr1 148045988 148046399 -94617954 - L1PA3 LINE L1 -3 6152 5742 3966 17 0 2 chr1 148046399 148046907 -94617446 + L1PA3 LINE L1 5231 5737 -418 463 325 129 30 chr1 148046961 148047293 -94617060 + L2 LINE L2 2949 3313 0 1233 242 82 9 chr1 148048413 148048864 -94615489 + MER69B DNA AcHobo 743 1226 0 808 255 92 21 chr1 148048866 148049308 -94615045 - MER20B DNA MER1_type -99 684 129 574 207 17 0 chr1 148050082 148050198 -94614155 - MIR SINE MIR -43 219 102 32 26 0 0 chr1 148050287 148050326 -94614027 + AT_rich Low_complexity Low_complexity 1 39 0 640 226 0 8 chr1 148050351 148050475 -94613878 + FLAM_A SINE Alu 1 123 -19 1059 161 96 5 chr1 148050847 148051046 -94613307 + MSTB LTR MaLR 1 217 -209 197 83 28 0 chr1 148051548 148051584 -94612769 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 463 306 16 0 chr1 148051584 148051705 -94612648 + MIR SINE MIR 16 138 -124 280 328 8 16 chr1 148053326 148053448 -94610905 - MIR SINE MIR -13 249 129 700 339 45 0 chr1 148054350 148054595 -94609758 + MIR SINE MIR 1 256 -6 226 332 211 5 chr1 148055676 148055875 -94608478 - MIR SINE MIR -3 259 20 202 228 18 18 chr1 148056040 148056097 -94608256 - MIR3 SINE MIR -1 207 151 208 306 42 14 chr1 148056204 148056276 -94608077 - MIR SINE MIR -62 146 73 2273 90 3 22 chr1 148056912 148057224 -94607129 + AluY SINE Alu 1 306 -5 325 266 35 98 chr1 148057943 148058146 -94606207 - L2 LINE L2 -4 3309 3120 234 344 25 32 chr1 148058991 148059148 -94605205 + MIR SINE MIR 107 262 0 226 317 65 49 chr1 148059503 148059626 -94604727 + MIR3 SINE MIR 36 160 -48 633 260 7 13 chr1 148059628 148059782 -94604571 - MER5B DNA MER1_type -24 154 2 215 152 0 65 chr1 148060677 148060723 -94603630 + L2 LINE L2 3269 3311 -2 899 143 8 0 chr1 148061341 148061474 -94602879 - AluJo SINE Alu -178 134 1 441 262 7 63 chr1 148061527 148061688 -94602665 + MIR SINE MIR 42 192 -67 362 258 47 31 chr1 148062645 148062773 -94601580 + MIR3 SINE MIR 70 199 -9 30 27 0 0 chr1 148064014 148064051 -94600302 + AT_rich Low_complexity Low_complexity 1 37 0 722 292 159 14 chr1 148064145 148064491 -94599862 - LTR16A LTR ERVL 0 450 55 2206 125 3 0 chr1 148065687 148065991 -94598362 - AluSg SINE Alu -5 305 1 25 0 0 0 chr1 148067532 148067557 -94596796 + AT_rich Low_complexity Low_complexity 1 25 0 1271 131 56 52 chr1 148067571 148067838 -94596515 - L1MA10 LINE L1 -525 5643 5376 3771 156 13 17 chr1 148067838 148068523 -94595830 + L1MA10 LINE L1 5644 6334 0 293 333 71 0 chr1 148069562 148069688 -94594665 + MIR SINE MIR 128 262 0 416 210 0 8 chr1 148270096 148270183 -94394170 - AluS SINE Alu -236 66 1 528 301 162 34 chr1 148270188 148270437 -94393916 + L2 LINE L2 1325 1541 -1773 1560 170 28 35 chr1 148270437 148270726 -94393627 - AluJo SINE Alu -25 287 1 528 301 162 34 chr1 148270726 148270914 -94393439 + L2 LINE L2 1541 1818 -1496 423 315 27 38 chr1 148271252 148271317 -94393036 + L3 LINE CR1 785 849 -728 2282 77 28 0 chr1 148271317 148271602 -94392751 + AluSp SINE Alu 1 293 -20 423 315 27 38 chr1 148271602 148271720 -94392633 + L3 LINE CR1 849 966 -611 873 186 21 32 chr1 148271748 148271936 -94392417 - AluJo SINE Alu -3 309 124 24 0 0 0 chr1 148271936 148271960 -94392393 + AT_rich Low_complexity Low_complexity 1 24 0 755 167 8 0 chr1 148271962 148272094 -94392259 + AluJ SINE Alu 1 133 -169 271 109 0 36 chr1 148272100 148272155 -94392198 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 1112 157 23 0 chr1 148272155 148272327 -94392026 + AluJ SINE Alu 129 304 -8 1444 59 12 0 chr1 148272327 148272497 -94391856 + AluSp SINE Alu 1 172 -141 420 193 16 122 chr1 148272608 148272786 -94391567 + MER67A LTR ERV1 295 485 -58 2304 103 0 7 chr1 148272786 148273086 -94391267 + AluSp SINE Alu 1 298 -15 420 193 16 122 chr1 148273086 148273140 -94391213 + MER67A LTR ERV1 485 543 0 563 242 96 33 chr1 148273547 148273642 -94390711 - L1MC4a LINE L1 -1643 6165 6077 2517 67 0 0 chr1 148273642 148273942 -94390411 - AluY SINE Alu -11 300 1 563 242 96 33 chr1 148273942 148274086 -94390267 - L1MC4a LINE L1 -1731 6077 5911 769 136 0 50 chr1 148274087 148274227 -94390126 - FLAM_C SINE Alu 0 133 1 1920 105 4 18 chr1 148274239 148274515 -94389838 - AluSp SINE Alu -2 311 40 510 100 0 0 chr1 148274516 148274586 -94389767 - AluS SINE Alu -242 70 1 2402 71 3 0 chr1 148274600 148274927 -94389426 - AluSp SINE Alu 0 328 1 418 261 54 38 chr1 148274928 148275112 -94389241 - L1ME2 LINE L1 -34 6130 5944 2051 142 33 0 chr1 148275113 148275415 -94388938 + AluJo SINE Alu 1 312 0 2244 89 21 0 chr1 148275439 148275720 -94388633 - AluSg SINE Alu -23 287 1 219 310 105 23 chr1 148276016 148276187 -94388166 + L2 LINE L2 3079 3263 -50 206 329 106 12 chr1 148276819 148276904 -94387449 + L2 LINE L2 3199 3291 -22 548 235 64 11 chr1 148276905 148277092 -94387261 - L1M4 LINE L1 -3354 2792 2596 275 120 0 20 chr1 148277097 148277147 -94387206 + (TTCCC)n Simple_repeat Simple_repeat 4 52 0 849 142 0 0 chr1 148277170 148277297 -94387056 - FLAM_C SINE Alu -6 127 1 873 279 20 10 chr1 148277301 148277606 -94386747 - L1M4 LINE L1 -3540 2606 2299 337 320 46 34 chr1 148277823 148277998 -94386355 + L2 LINE L2 884 1060 -2254 328 302 13 54 chr1 148278000 148278100 -94386253 + L1M4 LINE L1 4415 4509 -1637 2551 93 0 0 chr1 148278100 148278411 -94385942 + AluSx SINE Alu 1 311 -1 328 302 13 54 chr1 148278411 148278459 -94385894 + L1M4 LINE L1 4509 4557 -1589 554 138 0 0 chr1 148278549 148278629 -94385724 - MER30 DNA MER1_type 0 230 151 3126 84 12 5 chr1 148278629 148279035 -94385318 - SVA Other Other 0 1386 978 2456 82 0 10 chr1 148279195 148279501 -94384852 + AluSq SINE Alu 1 303 -10 264 100 0 0 chr1 148279830 148279870 -94384483 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2187 117 13 3 chr1 148279945 148280244 -94384109 + AluSx SINE Alu 1 302 -10 2591 71 0 0 chr1 148280462 148280770 -94383583 + AluY SINE Alu 4 311 0 180 0 0 0 chr1 148280787 148280807 -94383546 + (T)n Simple_repeat Simple_repeat 1 20 0 2199 92 17 3 chr1 148280832 148281126 -94383227 + AluSx SINE Alu 1 298 -14 706 138 89 0 chr1 148281199 148281322 -94383031 - AluSc SINE Alu -9 300 167 270 377 58 56 chr1 148281636 148282082 -94382271 + L2 LINE L2 2811 3257 -15 280 224 0 40 chr1 148282085 148282161 -94382192 + AluJo SINE Alu 86 158 -144 299 137 166 177 chr1 148282234 148282348 -94382005 + MLT1G1 LTR MaLR 1 114 -481 1670 147 98 0 chr1 148282348 148282613 -94381740 + AluSx SINE Alu 1 291 -21 299 137 166 177 chr1 148282613 148282673 -94381680 + MLT1G1 LTR MaLR 114 173 -422 268 278 49 134 chr1 148282691 148282826 -94381527 - MIR SINE MIR -54 208 98 2198 112 7 0 chr1 148282826 148283120 -94381233 + AluSg SINE Alu 1 296 -14 268 278 49 134 chr1 148283120 148283207 -94381146 - MIR SINE MIR -164 98 5 2166 113 41 0 chr1 148283366 148283658 -94380695 + AluSx SINE Alu 1 304 -8 613 276 26 68 chr1 148284850 148285115 -94379238 + MIR SINE MIR 3 256 -6 207 100 0 0 chr1 148287036 148287066 -94377287 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 394 292 98 8 chr1 148288666 148288830 -94375523 + MIR3 SINE MIR 17 197 -11 203 303 79 0 chr1 148288830 148288906 -94375447 + MIR SINE MIR 97 178 -84 2405 101 0 0 chr1 148288933 148289231 -94375122 + AluSx SINE Alu 1 298 -14 2183 111 7 3 chr1 148290153 148290441 -94373912 - AluSx SINE Alu -23 289 1 2082 121 0 17 chr1 148290445 148290622 -94373731 - AluSx SINE Alu 0 310 139 2353 92 3 0 chr1 148290622 148290915 -94373438 - AluSp SINE Alu -19 294 1 2082 121 0 17 chr1 148290915 148291052 -94373301 - AluSx SINE Alu -171 139 1 1117 183 0 0 chr1 148291121 148291307 -94373046 - AluJb SINE Alu -4 308 123 541 118 0 49 chr1 148291310 148291412 -94372941 - L1M LINE L1 -771 5413 5317 1223 105 6 0 chr1 148291464 148291626 -94372727 + AluSg/x SINE Alu 132 294 -16 986 194 36 14 chr1 148291626 148291905 -94372448 - L1M4 LINE L1 -832 5314 5030 2044 116 25 4 chr1 148292828 148293278 -94371075 - AluSx SINE Alu 0 456 1 1923 163 3 3 chr1 148293280 148293575 -94370778 - AluJo SINE Alu -17 295 1 2114 113 10 20 chr1 148294702 148295003 -94369350 - AluSx SINE Alu -14 298 1 396 0 0 0 chr1 148295279 148295323 -94369030 + (GA)n Simple_repeat Simple_repeat 1 44 0 492 137 0 0 chr1 148295751 148295824 -94368529 - AluJ/FLAM SINE Alu -238 74 2 2189 125 3 0 chr1 148296028 148296325 -94368028 + AluSq SINE Alu 1 298 -15 2332 107 0 0 chr1 148296467 148296757 -94367596 + AluSg SINE Alu 1 290 -20 373 231 133 49 chr1 148297289 148297432 -94366921 - L2 LINE L2 -1 3312 3158 587 190 41 0 chr1 148298141 148298262 -94366091 + FLAM_C SINE Alu 6 131 -12 835 155 0 0 chr1 148298533 148298662 -94365691 + FLAM_A SINE Alu 3 131 -2 233 268 21 0 chr1 148299167 148299264 -94365089 + (CA)n Simple_repeat Simple_repeat 2 100 0 504 188 18 14 chr1 148301706 148301851 -94362502 - MIR SINE MIR -50 212 68 236 278 42 14 chr1 148301914 148301986 -94362367 - L2 LINE L2 -77 3195 3122 193 255 0 0 chr1 148302208 148302259 -94362094 - L2 LINE L2 -308 2964 2914 342 244 93 47 chr1 148303310 148303503 -94360850 + L2 LINE L2 2905 3106 -166 2005 119 11 0 chr1 148303688 148303966 -94360387 + AluSq SINE Alu 1 281 -32 465 314 33 94 chr1 148304454 148304921 -94359432 - L1 LINE L1 -2726 3420 2898 1928 143 52 3 chr1 148305830 148306117 -94358236 - AluJb SINE Alu -11 301 1 389 255 140 13 chr1 148307091 148307248 -94357105 - MIR3 SINE MIR -2 206 30 185 289 82 62 chr1 148307588 148307685 -94356668 + L2 LINE L2 3169 3267 -5 412 259 46 8 chr1 148307915 148308046 -94356307 + MIR3 SINE MIR 67 202 -6 216 163 0 0 chr1 148309253 148309296 -94355057 + (TG)n Simple_repeat Simple_repeat 2 44 0 2164 116 0 26 chr1 148309796 148310107 -94354246 - AluSx SINE Alu -9 303 1 1759 173 7 10 chr1 148310209 148310510 -94353843 + AluJb SINE Alu 4 303 -9 302 267 67 0 chr1 148310513 148310603 -94353750 + MER34 LTR ERV1 447 542 0 1015 118 134 11 chr1 148310678 148310865 -94353488 + MER34C LTR ERV1 5 214 -371 1612 189 25 14 chr1 148310964 148311249 -94353104 + AluJo SINE Alu 10 297 -15 2159 120 0 46 chr1 148311280 148311605 -94352748 + AluSx SINE Alu 1 310 -2 1985 140 3 0 chr1 148311780 148312065 -94352288 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr1 148312067 148312092 -94352261 + AT_rich Low_complexity Low_complexity 1 25 0 677 143 21 64 chr1 148312106 148312246 -94352107 + FLAM_C SINE Alu 9 142 -1 2059 156 28 6 chr1 148312289 148312649 -94351704 - MLT1B LTR MaLR -22 368 1 2156 60 89 3 chr1 148312829 148313111 -94351242 - AluY SINE Alu -5 306 1 688 94 0 0 chr1 148313415 148313521 -94350832 + AluY SINE Alu 206 311 0 1846 193 70 27 chr1 148313946 148314386 -94349967 - LTR2B LTR ERV1 0 490 32 2183 69 35 0 chr1 148314497 148314785 -94349568 + AluY SINE Alu 1 298 -13 442 190 70 60 chr1 148315069 148315269 -94349084 + LTR37A LTR ERV1 225 426 0 581 211 30 36 chr1 148315291 148315457 -94348896 - FRAM SINE Alu 0 166 2 252 127 291 0 chr1 148315493 148315548 -94348805 + MER69A DNA AcHobo 60 130 -47 2021 113 3 41 chr1 148315555 148315846 -94348507 + AluSx SINE Alu 2 281 -31 316 323 25 55 chr1 148315857 148316058 -94348295 + L1M4 LINE L1 2117 2311 -3835 26 50 0 0 chr1 148316074 148316114 -94348239 + AT_rich Low_complexity Low_complexity 1 40 0 652 210 35 14 chr1 148317194 148317337 -94347016 + LTR40a LTR ERVL 1 146 -373 302 129 177 0 chr1 148317423 148317485 -94346868 + LTR40b LTR ERVL 145 217 -245 1632 243 87 30 chr1 148317494 148317987 -94346366 + REP3 LTR ERV 1 521 -41 664 163 149 7 chr1 148318039 148318180 -94346173 + LTR40b LTR ERVL 302 462 0 183 296 17 52 chr1 148318902 148319017 -94345336 - L2 LINE L2 -253 3019 2909 2180 113 0 3 chr1 148319216 148319509 -94344844 + AluSg SINE Alu 1 292 -18 285 243 126 9 chr1 148319556 148319667 -94344686 + MIR SINE MIR 89 212 -50 25 31 0 0 chr1 148321003 148321035 -94343318 + AT_rich Low_complexity Low_complexity 1 32 0 2023 125 18 4 chr1 148321035 148321341 -94343012 + AluSx SINE Alu 1 310 0 641 242 21 58 chr1 148321605 148321795 -94342558 + MER20 DNA MER1_type 33 215 -4 2360 101 0 0 chr1 148321863 148322161 -94342192 - AluY SINE Alu -13 298 1 2284 98 3 7 chr1 148322188 148322484 -94341869 + AluSq SINE Alu 1 295 -18 10313 134 10 33 chr1 148322707 148324487 -94339866 + L1P LINE L1 3 1740 -4406 393 313 0 8 chr1 148325066 148325197 -94339156 - MIR SINE MIR 0 262 133 6505 125 16 14 chr1 148325244 148326211 -94338142 + LTR5 LTR ERVK 1 969 0 1369 80 11 6 chr1 148326232 148326408 -94337945 + AluSp SINE Alu 125 301 -12 4437 177 30 56 chr1 148327137 148328132 -94336221 + LTR5 LTR ERVK 1 969 0 24 32 0 0 chr1 148328255 148328286 -94336067 + AT_rich Low_complexity Low_complexity 1 31 0 2496 72 0 7 chr1 148328299 148328606 -94335747 - AluY SINE Alu -6 305 1 1898 118 39 52 chr1 148328706 148329011 -94335342 - AluSp SINE Alu -12 301 1 438 303 28 14 chr1 148329019 148329161 -94335192 - L1M4 LINE L1 -987 5159 5016 688 118 0 0 chr1 148329590 148329683 -94334670 + AluS SINE Alu 2 94 -218 399 91 0 0 chr1 148330155 148330210 -94334143 + U6 snRNA snRNA 2 56 -51 1901 179 10 0 chr1 148330249 148330557 -94333796 + AluSx SINE Alu 1 311 -1 2376 106 0 0 chr1 148330884 148331185 -94333168 + AluSg SINE Alu 1 301 -9 889 67 25 8 chr1 148331283 148331403 -94332950 + AluSc SINE Alu 1 122 -187 883 186 21 32 chr1 148331543 148331731 -94332622 - AluJo SINE Alu -3 309 124 24 0 0 0 chr1 148331731 148331755 -94332598 + AT_rich Low_complexity Low_complexity 1 24 0 859 177 0 0 chr1 148331757 148331961 -94332392 + FLAM_C SINE Alu 1 204 0 1097 163 23 0 chr1 148331961 148332133 -94332220 + AluJb SINE Alu 129 304 -8 2464 69 10 0 chr1 148332133 148332436 -94331917 + AluSp SINE Alu 1 306 -7 350 337 70 6 chr1 148332775 148332947 -94331406 - L3 LINE CR1 -318 1259 1077 489 322 59 51 chr1 148333000 148333236 -94331117 - L3 LINE CR1 -696 881 644 1926 118 6 85 chr1 148333405 148333600 -94330753 - AluSx SINE Alu -7 305 145 2420 73 3 0 chr1 148333600 148333887 -94330466 - AluSp SINE Alu -24 289 2 1926 118 6 85 chr1 148333887 148334022 -94330331 - AluSx SINE Alu -167 145 1 476 231 8 58 chr1 148334165 148334286 -94330067 + MIR SINE MIR 47 161 -101 2175 124 3 19 chr1 148334324 148334638 -94329715 + AluSg SINE Alu 1 309 -1 327 188 29 0 chr1 148334890 148334959 -94329394 + L1MA9 LINE L1 6011 6081 -231 2249 98 0 0 chr1 148334969 148335243 -94329110 + AluSc SINE Alu 1 274 -35 234 0 0 0 chr1 148335245 148335271 -94329082 + (CA)n Simple_repeat Simple_repeat 1 26 0 276 183 113 14 chr1 148335279 148335350 -94329003 + L1MA9 LINE L1 6187 6264 -48 2207 105 0 3 chr1 148335983 148336301 -94328052 + AluSg SINE Alu 1 317 0 1171 107 95 0 chr1 148337503 148337671 -94326682 - AluSp SINE Alu -129 184 1 342 201 109 98 chr1 148341297 148341481 -94322872 - MIR SINE MIR 0 262 77 2376 87 7 0 chr1 148341481 148341781 -94322572 + AluSg SINE Alu 1 302 -8 381 43 0 0 chr1 148342689 148342736 -94321617 + (A)n Simple_repeat Simple_repeat 1 47 0 2443 101 0 0 chr1 148344402 148344708 -94319645 + AluSx SINE Alu 1 306 -6 216 0 0 0 chr1 148345369 148345393 -94318960 + (GA)n Simple_repeat Simple_repeat 1 24 0 579 235 163 28 chr1 148346425 148346647 -94317706 - MIR SINE MIR 0 262 1 2447 79 0 10 chr1 148347043 148347347 -94317006 - AluSg SINE Alu -9 301 1 2385 101 10 3 chr1 148347358 148347666 -94316687 - AluSx SINE Alu -2 310 1 2148 115 16 13 chr1 148349349 148349516 -94314837 - AluSq SINE Alu -8 305 135 2579 64 3 13 chr1 148349516 148349828 -94314525 - AluSp SINE Alu -4 309 1 2148 115 16 13 chr1 148349828 148349964 -94314389 - AluSq SINE Alu -178 135 1 1532 105 8 59 chr1 148349967 148350155 -94314198 - AluSg/x SINE Alu -1 309 134 2321 110 3 0 chr1 148350155 148350464 -94313889 - AluSp SINE Alu -2 311 2 1532 105 8 59 chr1 148350464 148350514 -94313839 - AluSg/x SINE Alu -176 134 83 857 153 0 15 chr1 148350516 148350647 -94313706 - FLAM_C SINE Alu -4 129 1 1949 141 46 0 chr1 148350679 148350962 -94313391 + AluSx SINE Alu 1 296 -16 852 202 6 45 chr1 148350962 148351140 -94313213 + AluJo/FRAM SINE Alu 134 304 -8 31 58 0 0 chr1 148351175 148351227 -94313126 + AT_rich Low_complexity Low_complexity 1 52 0 1961 141 3 0 chr1 148351280 148351594 -94312759 + AluSx SINE Alu 1 315 0 195 184 0 0 chr1 148351659 148351697 -94312656 + CT-rich Low_complexity Low_complexity 1 38 0 1404 158 58 42 chr1 148351723 148351845 -94312508 - AluJo SINE Alu -39 273 154 1695 109 0 5 chr1 148351845 148352065 -94312288 - AluSx SINE Alu -93 219 1 1404 158 58 42 chr1 148352065 148352201 -94312152 - AluJo SINE Alu -158 154 11 2163 109 3 7 chr1 148352247 148352540 -94311813 + AluSx SINE Alu 1 292 -20 781 247 11 5 chr1 148352566 148352752 -94311601 + LTR16A LTR ERVL 258 444 -6 951 211 28 80 chr1 148353228 148353275 -94311078 + MIR SINE MIR 22 70 -192 2256 93 17 23 chr1 148353275 148353576 -94310777 + AluSq SINE Alu 1 299 -14 2471 86 3 0 chr1 148353577 148353880 -94310473 + AluSp SINE Alu 2 305 -8 951 211 28 80 chr1 148353880 148354081 -94310272 + MIR SINE MIR 69 259 -3 2353 82 0 23 chr1 148354606 148354910 -94309443 + AluY SINE Alu 1 297 -14 358 194 62 136 chr1 148355692 148355878 -94308475 - MIR3 SINE MIR -34 174 38 2244 100 10 0 chr1 148356020 148356319 -94308034 - AluSp SINE Alu -11 302 1 264 262 190 42 chr1 148356915 148357059 -94307294 + MIR SINE MIR 24 187 -66 7198 56 2 4 chr1 148357828 148358654 -94305699 - LTR5 LTR ERVK 0 969 145 4040 71 7 21 chr1 148358772 148359348 -94305005 - SVA Other Other -806 580 13 288 0 0 0 chr1 148359378 148359410 -94304943 + (TG)n Simple_repeat Simple_repeat 1 32 0 1751 155 0 4 chr1 148359410 148359668 -94304685 - AluSq SINE Alu -56 257 1 634 61 0 0 chr1 148359668 148359750 -94304603 - MER30B DNA MER1_type -108 82 1 744 195 0 8 chr1 148359766 148359894 -94304459 + FLAM_A SINE Alu 1 127 -6 2194 113 17 7 chr1 148360025 148360327 -94304026 + AluSp SINE Alu 1 305 -8 2398 99 0 0 chr1 148360327 148360631 -94303722 + AluSg SINE Alu 1 304 -6 1384 83 0 17 chr1 148360631 148360812 -94303541 + AluY SINE Alu 133 310 -1 2771 104 0 0 chr1 148360837 148361201 -94303152 + THE1B LTR MaLR 1 364 0 346 235 81 66 chr1 148361392 148361505 -94302848 + L1M3 LINE L1 5254 5364 -807 2332 107 0 7 chr1 148361505 148361805 -94302548 - AluSx SINE Alu -12 300 3 346 235 81 66 chr1 148361805 148361864 -94302489 + L1M3 LINE L1 5364 5432 -739 2311 101 0 28 chr1 148361864 148362042 -94302311 - AluSx SINE Alu -3 309 142 2439 84 3 0 chr1 148362042 148362352 -94302001 - AluY SINE Alu 0 311 1 2311 101 0 28 chr1 148362352 148362491 -94301862 - AluSx SINE Alu -170 142 1 346 235 81 66 chr1 148362491 148362514 -94301839 + L1M3 LINE L1 5432 5453 -718 24 0 0 0 chr1 148362593 148362617 -94301736 + AT_rich Low_complexity Low_complexity 1 24 0 332 250 101 14 chr1 148362703 148362851 -94301502 - L1MC4a LINE L1 -1793 6015 5855 1423 187 10 73 chr1 148362853 148362941 -94301412 - AluJo SINE Alu 0 305 213 1991 111 3 92 chr1 148362941 148363117 -94301236 - AluSx SINE Alu -16 296 106 189 0 0 0 chr1 148363117 148363138 -94301215 + (TA)n Simple_repeat Simple_repeat 1 21 0 2358 65 3 10 chr1 148363138 148363431 -94300922 - AluY SINE Alu -20 291 1 1991 111 3 92 chr1 148363431 148363442 -94300911 - AluSx SINE Alu -205 107 97 2280 84 16 29 chr1 148363442 148363753 -94300600 - AluY SINE Alu -4 307 1 1991 111 3 92 chr1 148363753 148363888 -94300465 - AluSx SINE Alu -215 97 1 1423 187 10 73 chr1 148363888 148364123 -94300230 - AluJo SINE Alu -92 213 1 238 306 81 0 chr1 148365125 148365187 -94299166 - L2 LINE L2 0 3272 3206 215 289 0 0 chr1 148365370 148365415 -94298938 + polypyrimidine Low_complexity Low_complexity 2 46 0 1310 131 0 0 chr1 148365420 148365619 -94298734 + L1PA15 LINE L1 5967 6165 0 2170 123 0 3 chr1 148365621 148365949 -94298404 + AluSq SINE Alu 1 327 0 758 163 0 41 chr1 148366105 148366228 -94298125 - FLAM_C SINE Alu -15 118 1 203 210 0 123 chr1 148366430 148366511 -94297842 - L2 LINE L2 -20 3293 3223 379 247 65 39 chr1 148366636 148366790 -94297563 - MER58C DNA MER1_type -31 184 27 1991 154 10 0 chr1 148366931 148367229 -94297124 + AluSx SINE Alu 1 301 -11 324 0 0 0 chr1 148367235 148367271 -94297082 + (CA)n Simple_repeat Simple_repeat 1 36 0 1178 161 0 0 chr1 148367271 148367445 -94296908 + AluJb SINE Alu 132 305 -7 180 250 23 57 chr1 148367446 148367534 -94296819 - L3 LINE CR1 -146 1431 1347 294 234 56 19 chr1 148367883 148367990 -94296363 - MER46C DNA MER2_type 0 338 228 2233 122 0 0 chr1 148368575 148368869 -94295484 + AluSq SINE Alu 1 294 -19 1639 167 50 23 chr1 148368889 148369189 -94295164 + AluJo SINE Alu 1 308 -4 258 39 78 0 chr1 148369707 148369758 -94294595 + (TTTG)n Simple_repeat Simple_repeat 4 58 0 2051 106 0 4 chr1 148369758 148370031 -94294322 - AluSx SINE Alu -40 272 1 266 298 64 11 chr1 148370397 148370491 -94293862 + MIR SINE MIR 119 217 -45 1155 133 0 0 chr1 148370878 148371044 -94293309 + AluSg/x SINE Alu 132 297 -15 2102 121 0 7 chr1 148371068 148371357 -94292996 + AluSg1 SINE Alu 4 290 -19 2359 86 3 10 chr1 148371358 148371661 -94292692 + AluSg SINE Alu 1 301 -9 274 119 0 68 chr1 148371805 148371864 -94292489 + L1MB3 LINE L1 5282 5336 -844 2227 148 4 126 chr1 148371883 148372009 -94292344 + L1MB3 LINE L1 5317 5457 -714 2880 7 0 0 chr1 148372009 148372314 -94292039 + AluYa5 SINE Alu 1 305 -6 2227 148 4 126 chr1 148372314 148372407 -94291946 + L1MB3 LINE L1 5457 5560 -611 2310 111 0 7 chr1 148372407 148372714 -94291639 + AluSq SINE Alu 1 305 -8 2227 148 4 126 chr1 148372714 148372829 -94291524 + L1MB3 LINE L1 5560 5566 -605 1428 205 0 46 chr1 148372829 148373136 -94291217 + AluJo SINE Alu 1 293 -19 2227 148 4 126 chr1 148373136 148373332 -94291021 + L1MB3 LINE L1 5566 5784 -387 353 140 0 0 chr1 148373334 148373384 -94290969 + MER57A LTR ERV1 295 344 -59 23 0 0 0 chr1 148373389 148373412 -94290941 + AT_rich Low_complexity Low_complexity 1 23 0 698 198 0 0 chr1 148373414 148373535 -94290818 - FLAM_C SINE Alu -18 125 5 1094 143 101 14 chr1 148373555 148373772 -94290581 + L1MB3 LINE L1 5774 6009 -174 3577 100 7 59 chr1 148373781 148374179 -94290174 - L1PB3 LINE L1 0 6154 5792 2388 108 0 0 chr1 148374179 148374484 -94289869 - AluSq SINE Alu -8 305 1 3577 100 7 59 chr1 148374484 148374647 -94289706 - L1PB3 LINE L1 -362 5792 5622 242 178 94 0 chr1 148374714 148374785 -94289568 + L1MB3 LINE L1 6018 6102 -79 663 193 9 0 chr1 148374978 148375092 -94289261 + FLAM_A SINE Alu 1 115 -18 26 0 0 0 chr1 148375092 148375118 -94289235 + AT_rich Low_complexity Low_complexity 1 26 0 1923 125 0 11 chr1 148375132 148375396 -94288957 - AluSg SINE Alu -36 274 14 7110 103 4 16 chr1 148375396 148376377 -94287976 + LTR5 LTR ERVK 1 969 0 2181 158 38 0 chr1 148376397 148376764 -94287589 - MER57A LTR ERV1 -22 381 1 16698 90 79 87 chr1 148376766 148377273 -94287080 - MER57A-int LTR ERV1 -2 7535 7025 2136 146 0 0 chr1 148377273 148377582 -94286771 - AluJb SINE Alu -3 309 1 16698 90 79 87 chr1 148377582 148378357 -94285996 - MER57A-int LTR ERV1 -512 7025 6245 1974 142 0 33 chr1 148378357 148378660 -94285693 - AluSx SINE Alu -19 293 1 16698 90 79 87 chr1 148378660 148380307 -94284046 - MER57A-int LTR ERV1 -1292 6245 4629 1126 137 10 59 chr1 148380307 148380511 -94283842 - THE1B LTR MaLR 0 364 171 191 39 19 77 chr1 148380513 148380565 -94283788 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1976 132 0 0 chr1 148380573 148380853 -94283500 - AluSg SINE Alu -5 305 26 1137 124 28 11 chr1 148380853 148381031 -94283322 - THE1B LTR MaLR -183 181 1 9858 93 25 32 chr1 148381031 148381198 -94283155 - MER57A-int LTR ERV1 -2904 4633 4466 2041 138 17 0 chr1 148381198 148381496 -94282857 + AluSx SINE Alu 1 303 -9 9858 93 25 32 chr1 148381496 148381552 -94282801 - MER57A-int LTR ERV1 -3071 4466 4411 3725 77 2 6 chr1 148381552 148382045 -94282308 - L1PA8 LINE L1 -1 6171 5681 9858 93 25 32 chr1 148382045 148382898 -94281455 - MER57A-int LTR ERV1 -3126 4411 3553 2145 165 40 6 chr1 148382898 148383250 -94281103 + THE1B LTR MaLR 1 364 0 10637 130 11 29 chr1 148383250 148383746 -94280607 + THE1B-int LTR MaLR 1 504 -1076 1916 146 3 14 chr1 148383746 148384040 -94280313 + AluSx SINE Alu 1 291 -21 10637 130 11 29 chr1 148384040 148385152 -94279201 + THE1B-int LTR MaLR 504 1580 0 2079 164 33 19 chr1 148385152 148385446 -94278907 + THE1B LTR MaLR 1 302 -62 2075 127 20 17 chr1 148385446 148385745 -94278608 - AluSx SINE Alu -12 300 1 2079 164 33 19 chr1 148385745 148385809 -94278544 + THE1B LTR MaLR 302 364 0 9858 93 25 32 chr1 148385809 148386257 -94278096 - MER57A-int LTR ERV1 -3981 3556 3116 520 168 51 66 chr1 148386337 148386358 -94277995 - MER57A-int LTR ERV1 -3651 2295 2275 2033 128 50 39 chr1 148386358 148386718 -94277635 + THE1B LTR MaLR 1 364 0 520 168 51 66 chr1 148386718 148386833 -94277520 - MER57A-int LTR ERV1 -3671 2275 2161 328 128 0 0 chr1 148386935 148386982 -94277371 + THE1A LTR MaLR 309 355 0 2025 113 61 78 chr1 148386982 148387105 -94277248 - MER41-int LTR ERV1 -3667 2279 2155 2069 134 0 3 chr1 148387105 148387396 -94276957 + AluSg SINE Alu 17 306 -4 2025 113 61 78 chr1 148387396 148387413 -94276940 - MER41-int LTR ERV1 -3791 2155 2139 2044 148 7 0 chr1 148387413 148387717 -94276636 + AluSq SINE Alu 1 306 -7 2025 113 61 78 chr1 148387717 148388100 -94276253 - MER41-int LTR ERV1 -3807 2139 1660 1249 154 64 0 chr1 148388109 148388153 -94276200 + MER50 LTR ERV1 7 47 -687 207 69 0 0 chr1 148388153 148388182 -94276171 + (CA)n Simple_repeat Simple_repeat 1 29 0 1249 154 64 0 chr1 148388182 148388357 -94275996 + MER50 LTR ERV1 47 240 -494 * 1510 161 36 22 chr1 148388340 148388614 -94275739 + MER50 LTR ERV1 433 710 -24 267 269 0 15 chr1 148388626 148388693 -94275660 - tRNA-Glu-GAG tRNA tRNA -3 72 7 2820 157 11 7 chr1 148388693 148389138 -94275215 - MER57A-int LTR ERV1 -4360 1586 1140 2044 85 3 115 chr1 148389138 148389478 -94274875 + AluSp SINE Alu 1 302 -11 1877 106 14 22 chr1 148389487 148389762 -94274591 + AluSx SINE Alu 2 274 -38 2351 111 132 24 chr1 148389767 148390137 -94274216 - MER57A-int LTR ERV1 -7127 410 1 2176 173 42 8 chr1 148390138 148390520 -94273833 - MER57A LTR ERV1 -8 395 1 715 146 0 83 chr1 148390569 148390713 -94273640 + AluJo SINE Alu 20 151 -161 1808 124 0 4 chr1 148390714 148390964 -94273389 + AluSx SINE Alu 47 295 -17 2044 123 14 0 chr1 148390967 148391093 -94273260 + AluSg SINE Alu 1 124 -186 2525 70 0 0 chr1 148391093 148391395 -94272958 + AluY SINE Alu 1 302 -9 2044 123 14 0 chr1 148391395 148391560 -94272793 + AluSg SINE Alu 124 296 -14 24 0 0 0 chr1 148391560 148391584 -94272769 + AT_rich Low_complexity Low_complexity 1 24 0 2162 122 7 7 chr1 148391642 148391946 -94272407 + AluSx SINE Alu 1 304 -8 2293 70 7 27 chr1 148391952 148392252 -94272101 + AluY SINE Alu 1 294 -17 947 294 80 56 chr1 148392288 148392863 -94271490 + L2 LINE L2 2515 3132 -181 799 136 24 0 chr1 148392863 148392988 -94271365 + FLAM_C SINE Alu 3 130 -3 947 294 80 56 chr1 148392988 148393174 -94271179 + L2 LINE L2 3132 3312 -1 555 250 114 27 chr1 148393298 148393482 -94270871 - MLT1C LTR MaLR 0 467 268 811 153 0 53 chr1 148393483 148393633 -94270720 - FLAM_C SINE Alu -1 142 1 1141 254 7 18 chr1 148393633 148393912 -94270441 - MLT1C LTR MaLR -191 276 1 252 146 24 0 chr1 148393968 148394009 -94270344 + MLT1A1 LTR MaLR 1 42 -323 334 316 0 0 chr1 148394010 148394124 -94270229 - L1 LINE L1 -2389 3757 3644 1076 249 148 26 chr1 148394131 148394569 -94269784 - MER77 LTR ERV1 -6 599 214 582 273 83 46 chr1 148394733 148394949 -94269404 - MLT1G LTR MaLR -298 292 69 1953 126 16 40 chr1 148395275 148395649 -94268704 + SVA Other Other 1 365 -1021 3572 62 5 14 chr1 148395752 148396191 -94268162 + SVA Other Other 952 1386 0 1667 73 0 56 chr1 148396444 148396678 -94267675 + AluSx SINE Alu 1 221 -91 235 233 105 0 chr1 148396707 148396793 -94267560 + MER74B LTR ERVL 528 622 0 577 82 56 21 chr1 148396851 148397085 -94267268 + (TA)n Simple_repeat Simple_repeat 1 242 0 673 157 0 9 chr1 148397089 148397204 -94267149 - FLAM_C SINE Alu -3 140 27 2113 135 0 0 chr1 148397204 148397507 -94266846 + AluSx SINE Alu 1 303 -9 284 70 23 0 chr1 148398159 148398202 -94266151 + (TTC)n Simple_repeat Simple_repeat 3 46 0 5287 46 3 7 chr1 148398202 148398807 -94265546 - SVA Other Other 0 1386 784 14894 60 3 12 chr1 148398984 148400937 -94263416 - L1P LINE L1 -1125 5021 3087 1019 161 0 59 chr1 148401121 148401307 -94263046 - AluJo SINE Alu -127 185 11 2147 109 3 7 chr1 148401353 148401646 -94262707 + AluSx SINE Alu 1 292 -20 851 242 11 5 chr1 148401672 148401858 -94262495 + LTR16A LTR ERVL 258 444 -6 861 213 20 74 chr1 148402334 148402381 -94261972 + MIR SINE MIR 22 70 -192 2223 113 3 22 chr1 148402381 148402692 -94261661 + AluSq SINE Alu 1 305 -8 861 213 20 74 chr1 148402692 148402888 -94261465 + MIR SINE MIR 70 252 -10 2176 115 0 16 chr1 148403419 148403724 -94260629 + AluY SINE Alu 1 300 -11 4864 189 11 1 chr1 148403729 148404672 -94259681 + L1P LINE L1 4326 5277 -869 276 283 236 0 chr1 148405613 148405719 -94258634 - MIR3 SINE MIR -11 197 67 1847 194 52 18 chr1 148406214 148406595 -94257758 + MLT1D LTR MaLR 107 500 -5 250 152 22 0 chr1 148407243 148407289 -94257064 - Alu SINE Alu -253 47 1 274 105 0 0 chr1 148407371 148407409 -94256944 + L1MC4a LINE L1 5448 5485 -2323 2423 81 0 7 chr1 148407469 148407778 -94256575 + AluSg SINE Alu 2 308 -2 837 137 0 43 chr1 148407790 148407929 -94256424 + FLAM_C SINE Alu 1 133 0 636 229 96 33 chr1 148407930 148408074 -94256279 + L1MC4a LINE L1 5911 6077 -1731 2498 63 0 0 chr1 148408074 148408374 -94255979 + AluY SINE Alu 1 300 -11 636 229 96 33 chr1 148408374 148408469 -94255884 + L1MC4a LINE L1 6077 6165 -1643 1221 206 32 112 chr1 148408876 148408930 -94255423 - MER67B LTR ERV1 0 543 486 2253 107 0 7 chr1 148408930 148409230 -94255123 - AluSp SINE Alu -15 298 1 1221 206 32 112 chr1 148409230 148409820 -94254533 - MER67B LTR ERV1 -57 486 59 2898 136 164 6 chr1 148410058 148410595 -94253758 + LTR29 LTR ERV1 1 622 0 376 188 35 153 chr1 148410720 148410922 -94253431 + LTR37A LTR ERV1 42 219 -207 2262 102 3 7 chr1 148410933 148411237 -94253116 + AluSg SINE Alu 1 303 -7 11377 55 0 1 chr1 148411366 148412814 -94251539 - L1P LINE L1 -2256 3890 2445 189 0 0 0 chr1 148412985 148413006 -94251347 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 24 32 0 0 chr1 148413154 148413185 -94251168 + AT_rich Low_complexity Low_complexity 1 31 0 254 250 70 50 chr1 148414279 148414379 -94249974 - HERVK3 LTR ERVK -2552 4691 4590 976 156 101 45 chr1 148416058 148416443 -94247910 + LTR7 LTR ERV1 1 450 0 1975 153 0 7 chr1 148417892 148418192 -94246161 - AluSx SINE Alu -14 298 1 450 247 0 0 chr1 148419797 148419890 -94244463 + L2 LINE L2 3180 3272 0 2078 122 0 4 chr1 148420021 148420300 -94244053 + AluSg SINE Alu 1 278 -32 304 0 64 21 chr1 148420302 148420349 -94244004 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2246 96 7 0 chr1 148420897 148421190 -94243163 + AluSp SINE Alu 1 295 -18 348 259 0 0 chr1 148421190 148421271 -94243082 - MLT1I LTR MaLR -14 395 315 216 0 0 0 chr1 148421395 148421419 -94242934 + (T)n Simple_repeat Simple_repeat 1 24 0 280 306 12 0 chr1 148421419 148421504 -94242849 - MLT1I LTR MaLR -243 166 81 1269 184 0 18 chr1 148421619 148421836 -94242517 + AluJo SINE Alu 13 225 -87 25 0 0 0 chr1 148421862 148421887 -94242466 + AT_rich Low_complexity Low_complexity 1 25 0 2221 114 0 3 chr1 148421901 148422198 -94242155 + AluSq SINE Alu 2 297 -16 586 262 73 21 chr1 148422198 148422389 -94241964 + MLT1H LTR MaLR 96 296 -253 434 199 131 2 chr1 148422515 148422637 -94241716 + L1MB8 LINE L1 5715 5851 -318 1211 135 15 65 chr1 148422642 148422902 -94241451 + L1MB8 LINE L1 5918 6164 -14 300 262 29 10 chr1 148422962 148423065 -94241288 + LTR37B LTR ERV1 14 118 -350 * 386 200 114 19 chr1 148423047 148423152 -94241201 + MER3 DNA MER1_type 27 141 -68 862 170 45 27 chr1 148423159 148423263 -94241090 + MER3 DNA MER1_type 2236 2337 -287 2322 170 70 81 chr1 148423263 148423543 -94240810 - LTR9 LTR ERV1 0 612 330 2389 72 3 0 chr1 148423543 148423834 -94240519 - AluSp SINE Alu -21 292 1 2322 170 70 81 chr1 148423834 148424172 -94240181 - LTR9 LTR ERV1 -282 330 1 862 170 45 27 chr1 148424172 148424291 -94240062 + MER3 DNA MER1_type 2337 2463 -161 288 91 0 0 chr1 148424292 148424336 -94240017 + (TA)n Simple_repeat Simple_repeat 1 44 0 1577 157 15 0 chr1 148424336 148424597 -94239756 - AluJb SINE Alu -17 295 31 2247 72 4 0 chr1 148424705 148424981 -94239372 - AluSp SINE Alu -36 277 1 1739 137 6 86 chr1 148424982 148425319 -94239034 - LTR9 LTR ERV1 -302 310 1 446 178 33 0 chr1 148425320 148425410 -94238943 + Charlie5 DNA MER1_type 2343 2435 -177 876 104 0 0 chr1 148425426 148425560 -94238793 + (TA)n Simple_repeat Simple_repeat 2 135 0 1929 141 10 0 chr1 148425560 148425851 -94238502 - AluJb SINE Alu -18 294 1 323 203 40 0 chr1 148425870 148425944 -94238409 + LTR37B LTR ERV1 139 215 -253 1709 169 17 13 chr1 148425956 148426258 -94238095 + AluSx SINE Alu 1 303 -9 2309 94 3 0 chr1 148426258 148426555 -94237798 + AluSq SINE Alu 1 298 -15 654 111 0 20 chr1 148426607 148426706 -94237647 + AluJ/FLAM SINE Alu 1 97 -215 411 206 99 7 chr1 148426707 148426862 -94237491 + LTR48 LTR ERV1 184 472 -225 24 0 0 0 chr1 148426942 148426966 -94237387 + AT_rich Low_complexity Low_complexity 1 24 0 4767 182 28 19 chr1 148427071 148428409 -94235944 + L1MB5 LINE L1 4824 6174 0 841 204 19 0 chr1 148428774 148428936 -94235417 + MLT1B LTR MaLR 226 390 0 362 169 87 98 chr1 148429378 148429561 -94234792 + HERVK22 LTR ERVK 4430 4610 -2227 324 353 24 37 chr1 148430859 148430911 -94233442 + HERVK22 LTR ERVK 6152 6203 -634 4572 87 85 0 chr1 148430911 148431545 -94232808 - LTR12 LTR ERV1 0 688 1 324 353 24 37 chr1 148431545 148431869 -94232484 + HERVK22 LTR ERVK 6203 6523 -314 625 95 0 0 chr1 148431932 148432016 -94232337 + AluY SINE Alu 2 85 -225 2249 108 0 25 chr1 148432171 148432486 -94231867 - AluSx SINE Alu -5 307 1 1778 205 60 74 chr1 148433219 148433800 -94230553 - L1MC4 LINE L1 0 8042 7470 2053 124 0 7 chr1 148433828 148434119 -94230234 - AluSx SINE Alu -23 289 1 1715 175 0 10 chr1 148434127 148434418 -94229935 - AluJb SINE Alu -24 288 1 30 27 0 0 chr1 148434427 148434464 -94229889 + AT_rich Low_complexity Low_complexity 1 37 0 519 158 0 0 chr1 148434489 148434565 -94229788 - L1MC4 LINE L1 -562 7480 7405 700 277 134 44 chr1 148434656 148435177 -94229176 + L2 LINE L2 2736 3301 -12 218 283 50 0 chr1 148435340 148435400 -94228953 + L2 LINE L2 3210 3272 0 2005 158 3 3 chr1 148435967 148436278 -94228075 - AluJo SINE Alu -1 311 1 1206 224 168 28 chr1 148436305 148436841 -94227512 - L1ME3A LINE L1 -9 6161 5514 245 316 0 35 chr1 148437252 148437366 -94226987 + GA-rich Low_complexity Low_complexity 2 111 0 274 300 11 11 chr1 148437626 148437716 -94226637 + AluSg/x SINE Alu 206 295 -5 2384 106 0 0 chr1 148438797 148439099 -94225254 + AluSx SINE Alu 1 302 -10 2013 144 23 3 chr1 148439102 148439408 -94224945 + AluSq SINE Alu 2 313 0 409 236 27 47 chr1 148439920 148440074 -94224279 - MER77 LTR ERV1 -7 598 487 1987 209 50 48 chr1 148440160 148440638 -94223715 - MER77 LTR ERV1 -86 519 41 2699 80 8 0 chr1 148441736 148442088 -94222265 + THE1A LTR MaLR 1 355 0 321 216 0 0 chr1 148442485 148442536 -94221817 + AluJ/monomer SINE Alu 1 51 -251 884 292 55 25 chr1 148442551 148443023 -94221330 + L1ME3 LINE L1 5466 5951 -211 501 207 110 67 chr1 148443373 148443537 -94220816 + MLT1I LTR MaLR 4 174 -235 207 211 0 0 chr1 148443942 148443964 -94220389 + (CA)n Simple_repeat Simple_repeat 2 23 -30 1740 168 17 14 chr1 148443964 148444261 -94220092 + AluJb SINE Alu 1 298 -14 207 211 0 0 chr1 148444261 148444290 -94220063 + (CA)n Simple_repeat Simple_repeat 22 53 0 1629 152 20 135 chr1 148444330 148444907 -94219446 - L1MB3 LINE L1 -74 6109 5613 2263 118 0 0 chr1 148444907 148445203 -94219150 - AluSx SINE Alu -16 296 1 1629 152 20 135 chr1 148445203 148445265 -94219088 - L1MB3 LINE L1 -570 5613 5545 566 182 0 0 chr1 148445412 148445511 -94218842 + MSTA LTR MaLR 330 428 0 6723 206 33 73 chr1 148445511 148446077 -94218276 - L1MB3 LINE L1 -622 5549 4962 2434 94 0 0 chr1 148446077 148446376 -94217977 - AluSg SINE Alu -11 299 1 6723 206 33 73 chr1 148446376 148447550 -94216803 - L1MB3 LINE L1 -1209 4962 3743 869 153 8 0 chr1 148447550 148447681 -94216672 + AluSq/x SINE Alu 2 133 -180 6723 206 33 73 chr1 148447681 148447696 -94216657 - L1MB3 LINE L1 -2428 3743 3729 294 95 0 0 chr1 148447696 148447738 -94216615 + (TA)n Simple_repeat Simple_repeat 2 43 0 6723 206 33 73 chr1 148447738 148448146 -94216207 - L1MB3 LINE L1 -2442 3729 3352 2028 146 0 0 chr1 148448146 148448434 -94215919 + AluSx SINE Alu 1 288 -24 429 246 42 28 chr1 148448438 148448580 -94215773 - MIR SINE MIR 0 262 119 240 233 110 14 chr1 148448917 148448990 -94215363 + L2 LINE L2 3189 3268 -4 207 270 14 0 chr1 148449221 148449295 -94215058 + GA-rich Low_complexity Low_complexity 3 77 0 2120 113 7 0 chr1 148449376 148449660 -94214693 - AluSg SINE Alu -20 290 5 360 236 0 0 chr1 148449688 148449777 -94214576 + CT-rich Low_complexity Low_complexity 3 91 0 2053 129 3 0 chr1 148450912 148451199 -94213154 + AluSx SINE Alu 13 300 -12 2424 139 23 39 chr1 148451632 148451831 -94212522 + MSTA LTR MaLR 1 202 -226 2086 137 3 0 chr1 148451831 148452124 -94212229 + AluSp SINE Alu 1 294 -19 2424 139 23 39 chr1 148452124 148452320 -94212033 + MSTA LTR MaLR 202 391 -37 1988 146 10 3 chr1 148452320 148452628 -94211725 - AluJb SINE Alu -2 310 1 2424 139 23 39 chr1 148452628 148452663 -94211690 + MSTA LTR MaLR 391 425 -3 266 200 38 0 chr1 148453131 148453211 -94211142 + (CA)n Simple_repeat Simple_repeat 1 83 0 2231 108 3 0 chr1 148453968 148454263 -94210090 + AluSq SINE Alu 1 296 -17 377 306 76 0 chr1 148454264 148454421 -94209932 + MIR SINE MIR 32 200 -62 2081 134 23 0 chr1 148455471 148455770 -94208583 + AluSx SINE Alu 1 306 -6 2553 183 21 62 chr1 148456369 148456805 -94207548 + L1MB4 LINE L1 5587 5992 -188 1977 163 7 0 chr1 148456805 148457112 -94207241 - AluSx SINE Alu -3 309 1 2553 183 21 62 chr1 148457112 148457288 -94207065 + L1MB4 LINE L1 5992 6174 -6 302 311 72 53 chr1 148457976 148458185 -94206168 - L2 LINE L2 -217 3055 2843 1110 205 50 43 chr1 148459445 148459703 -94204650 + AluJo SINE Alu 1 260 -52 209 316 80 22 chr1 148460145 148460370 -94203983 - L2 LINE L2 -355 2959 2722 183 156 0 0 chr1 148461015 148461047 -94203306 + CT-rich Low_complexity Low_complexity 2 33 0 822 143 8 136 chr1 148461105 148461356 -94202997 - MER20 DNA MER1_type 0 219 1 6753 108 4 0 chr1 148462395 148463322 -94201031 - THE1A-int LTR MaLR -649 931 1 2658 83 11 0 chr1 148463322 148463673 -94200680 - THE1A LTR MaLR 0 355 1 1826 108 4 36 chr1 148463673 148463951 -94200402 - Tigger2a DNA MER2_type -165 269 1 558 256 77 85 chr1 148464214 148464554 -94199799 - MLT1I LTR MaLR 0 409 73 332 305 11 0 chr1 148465658 148465753 -94198600 + GA-rich Low_complexity Low_complexity 5 100 0 3837 171 4 105 chr1 148466045 148466231 -94198122 - L1 LINE L1 -1336 4810 4607 1633 175 31 21 chr1 148466231 148466517 -94197836 - AluJb SINE Alu -23 289 1 3837 171 4 105 chr1 148466517 148466542 -94197811 - L1 LINE L1 -1539 4607 4581 474 160 0 0 chr1 148466542 148466617 -94197736 - AluS SINE Alu -236 76 2 3837 171 4 105 chr1 148466617 148467314 -94197039 - L1 LINE L1 -1565 4581 3926 447 214 42 74 chr1 148467748 148467797 -94196556 - MIR SINE MIR -65 143 94 2026 149 0 3 chr1 148467797 148468098 -94196255 - AluSx SINE Alu -12 300 1 447 214 42 74 chr1 148468098 148468214 -94196139 - MIR SINE MIR -114 94 33 481 178 186 0 chr1 148468266 148468384 -94195969 - MER104 DNA Tc2 -5 175 36 2094 148 0 0 chr1 148468420 148468724 -94195629 + AluJb SINE Alu 1 304 -8 187 120 20 20 chr1 148469269 148469319 -94195034 + (TA)n Simple_repeat Simple_repeat 2 51 0 372 189 21 0 chr1 148469324 148469419 -94194934 + L1M4 LINE L1 4318 4414 -1732 306 158 0 6 chr1 148469423 148469664 -94194689 + AluJo SINE Alu 7 298 -4 297 218 94 0 chr1 148469712 148469845 -94194508 + L1M4 LINE L1 4456 4612 -1534 405 58 0 0 chr1 148469845 148469897 -94194456 + (TG)n Simple_repeat Simple_repeat 2 53 0 416 288 26 39 chr1 148470035 148470188 -94194165 + L1ME3A LINE L1 5966 6116 -54 948 197 55 126 chr1 148470292 148470449 -94193904 - L1ME LINE L1 -538 5693 5526 2108 117 3 0 chr1 148470449 148470739 -94193614 - AluSx SINE Alu -21 291 1 948 197 55 126 chr1 148470739 148471125 -94193228 - L1ME LINE L1 -705 5526 5176 1041 122 0 0 chr1 148471166 148471305 -94193048 + AluJb SINE Alu 3 141 -171 203 175 0 0 chr1 148471322 148471362 -94192991 + A-rich Low_complexity Low_complexity 3 42 0 722 260 16 0 chr1 148471362 148471554 -94192799 - L1ME LINE L1 -1053 5162 4968 3365 173 140 35 chr1 148471573 148472345 -94192008 + MER21B LTR ERV1 1 931 0 2203 243 33 29 chr1 148472347 148472984 -94191369 - L1ME LINE L1 -1311 4904 4262 2164 79 50 0 chr1 148472984 148473263 -94191090 - AluSq SINE Alu -20 293 1 2203 243 33 29 chr1 148473263 148473386 -94190967 - L1ME LINE L1 -1953 4262 4141 2656 66 6 0 chr1 148473387 148473722 -94190631 + L1PA8 LINE L1 5836 6172 0 3636 158 56 72 chr1 148473754 148474503 -94189850 - MER21A LTR ERV1 0 931 195 1305 234 36 55 chr1 148475045 148475570 -94188783 - L1ME LINE L1 -2909 3306 2792 832 258 84 56 chr1 148475684 148476277 -94188076 - L1ME LINE L1 -3600 2615 2040 1795 156 11 0 chr1 148476277 148476559 -94187794 - AluSx SINE Alu -24 288 4 832 258 84 56 chr1 148476559 148476631 -94187722 - L1ME LINE L1 -4175 2040 1972 1693 112 12 8 chr1 148476631 148476889 -94187464 + L1PB1 LINE L1 5893 6151 0 832 258 84 56 chr1 148476889 148477064 -94187289 - L1ME LINE L1 -4243 1972 1803 2391 110 0 0 chr1 148477064 148477373 -94186980 - AluSq SINE Alu -4 309 1 832 258 84 56 chr1 148477373 148477744 -94186609 - L1ME LINE L1 -4412 1803 1013 1962 244 55 15 chr1 148477759 148477946 -94186407 - MLT1H LTR MaLR -4 545 367 2046 146 0 7 chr1 148477946 148478254 -94186099 - AluSx SINE Alu -6 306 1 1962 244 55 15 chr1 148478254 148478541 -94185812 - MLT1H LTR MaLR -182 367 52 237 275 53 41 chr1 148479112 148479283 -94185070 - L1ME LINE L1 -5855 350 178 927 123 0 8 chr1 148480549 148480679 -94183674 + FRAM SINE Alu 18 146 -30 183 42 0 0 chr1 148480682 148480706 -94183647 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 221 214 86 0 chr1 148480769 148480839 -94183514 + MIR SINE MIR 184 259 -3 1966 81 12 4 chr1 148482389 148482635 -94181718 + AluSg SINE Alu 1 248 -62 858 164 0 21 chr1 148482678 148482818 -94181535 + FLAM_C SINE Alu 1 137 -6 496 237 26 33 chr1 148482818 148482970 -94181383 + MIR SINE MIR 80 230 -32 1786 165 26 41 chr1 148483175 148483520 -94180833 + MER2 DNA MER2_type 6 345 0 210 197 96 157 chr1 148483520 148483718 -94180635 - MIR SINE MIR -64 198 13 195 114 0 0 chr1 148485433 148485468 -94178885 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 489 134 0 21 chr1 148487237 148487334 -94177019 - L1PB1 LINE L1 -1 6150 6056 817 212 7 0 chr1 148487334 148487480 -94176873 - FRAM SINE Alu -19 147 1 305 233 56 45 chr1 148487480 148487630 -94176723 - MIR SINE MIR -62 200 60 238 287 108 77 chr1 148488159 148488295 -94176058 + MIR SINE MIR 47 192 -70 2173 110 10 3 chr1 148488295 148488594 -94175759 + AluSg SINE Alu 1 301 -9 238 287 108 77 chr1 148488594 148488652 -94175701 + MIR SINE MIR 192 247 -15 210 224 15 90 chr1 148488648 148488715 -94175638 - MIR SINE MIR -131 77 16 * 263 161 0 16 chr1 148489958 148490020 -94174333 + (TG)n Simple_repeat Simple_repeat 2 62 0 383 267 25 8 chr1 148490591 148490711 -94173642 - MIR3 SINE MIR -11 197 76 387 245 56 42 chr1 148491011 148491154 -94173199 - MIR SINE MIR -9 253 109 494 234 46 40 chr1 148491375 148491550 -94172803 + MIR SINE MIR 8 183 -79 180 353 0 0 chr1 148493525 148493593 -94170760 - L2 LINE L2 -3 3269 3202 244 294 137 34 chr1 148493905 148494051 -94170302 - HAL1 LINE L1 -14 2493 2333 2202 129 0 16 chr1 148494077 148494538 -94169815 - AluSx SINE Alu 0 456 1 596 262 59 49 chr1 148494548 148494834 -94169519 - L1MC4a LINE L1 -1875 5933 5645 1057 94 0 0 chr1 148496450 148496588 -94167765 + MER85 DNA T2_type 1 138 -1 305 143 32 32 chr1 148496588 148496644 -94167709 + Tigger2 DNA MER2_type 14 72 -2646 * 2843 108 32 25 chr1 148496631 148497074 -94167279 + Tigger2 DNA MER2_type 2273 2718 0 2404 97 0 0 chr1 148497079 148497377 -94166976 - AluSq SINE Alu -15 298 1 21 0 0 0 chr1 148497382 148497403 -94166950 + AT_rich Low_complexity Low_complexity 1 21 0 253 317 90 7 chr1 148497550 148497695 -94166658 + MIR SINE MIR 51 207 -55 1312 156 0 23 chr1 148497782 148498000 -94166353 - AluJb SINE Alu -15 297 85 2462 76 3 3 chr1 148498003 148498306 -94166047 - AluY SINE Alu -8 303 1 3741 141 52 0 chr1 148500338 148500920 -94163433 + LTR9 LTR ERV1 1 612 0 686 256 136 34 chr1 148500936 148501174 -94163179 - MIR SINE MIR -11 251 3 194 368 0 13 chr1 148501270 148501346 -94163007 - MIR SINE MIR -186 76 2 2276 119 6 0 chr1 148501836 148502147 -94162206 - AluSq SINE Alu 0 313 1 194 0 39 0 chr1 148502578 148502604 -94161749 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 148502810 148502840 -94161513 + AT_rich Low_complexity Low_complexity 1 30 0 232 268 0 0 chr1 148503048 148503104 -94161249 - MER5A DNA MER1_type -6 183 128 339 130 0 0 chr1 148503137 148503191 -94161162 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 2128 138 0 3 chr1 148503195 148503507 -94160846 - AluSx SINE Alu -1 311 1 349 176 0 15 chr1 148503507 148503575 -94160778 - MER5A DNA MER1_type -114 75 9 390 311 17 45 chr1 148504074 148504251 -94160102 + MLT1K LTR MaLR 168 339 -249 314 271 14 0 chr1 148504487 148504557 -94159796 + MLT1K LTR MaLR 517 587 -1 204 268 207 0 chr1 148504924 148505006 -94159347 - L2 LINE L2 -1 3312 3214 523 286 32 7 chr1 148505285 148505439 -94158914 + MIR SINE MIR 83 240 -22 473 217 96 0 chr1 148505547 148505662 -94158691 + Charlie5 DNA MER1_type 1 126 -2486 1710 182 39 0 chr1 148505663 148506021 -94158332 + Charlie5 DNA MER1_type 2237 2608 -4 270 254 0 0 chr1 148506798 148506869 -94157484 + MIR SINE MIR 184 254 -8 1085 128 7 0 chr1 148507329 148507478 -94156875 + AluSq/x SINE Alu 1 150 -162 11213 38 6 4 chr1 148507578 148508940 -94155413 - L1P LINE L1 -1606 4540 3177 1580 186 50 4 chr1 148509558 148509837 -94154516 - AluJo SINE Alu -20 292 1 314 269 185 92 chr1 148509975 148510213 -94154140 - MIR SINE MIR 0 262 3 994 139 93 6 chr1 148510508 148510680 -94153673 + AluSg/x SINE Alu 116 302 -8 58 24 0 12 chr1 148510691 148510744 -94153609 + AT_rich Low_complexity Low_complexity 1 54 -28 2392 79 0 3 chr1 148510744 148511034 -94153319 + AluSx SINE Alu 1 289 -23 58 24 0 12 chr1 148511034 148511063 -94153290 + AT_rich Low_complexity Low_complexity 54 82 0 491 328 65 4 chr1 148511647 148511894 -94152459 - L1ME LINE L1 -299 5822 5561 291 222 33 33 chr1 148513773 148513863 -94150490 - HAL1b LINE L1 -869 479 390 2008 182 41 7 chr1 148513980 148514393 -94149960 - L1MB4 LINE L1 -1 6179 5753 2132 115 3 13 chr1 148516150 148516462 -94147891 - AluSx SINE Alu -3 309 1 1983 85 4 0 chr1 148517422 148517668 -94146685 - AluSp SINE Alu -66 247 1 2506 84 10 0 chr1 148517822 148518130 -94146223 - AluSx SINE Alu -1 311 1 22 56 0 0 chr1 148518918 148518954 -94145399 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 148518967 148518999 -94145354 + AT_rich Low_complexity Low_complexity 1 32 0 347 313 30 38 chr1 148519016 148519147 -94145206 - L2 LINE L2 -6 3266 3137 182 171 29 0 chr1 148519412 148519447 -94144906 - L2 LINE L2 -68 3245 3210 2088 110 7 13 chr1 148519971 148520279 -94144074 + AluSx SINE Alu 1 306 -6 298 299 42 32 chr1 148520295 148520407 -94143946 + MIR SINE MIR 1 113 -95 192 152 0 0 chr1 148520890 148520923 -94143430 + CT-rich Low_complexity Low_complexity 3 35 0 28 0 0 0 chr1 148522691 148522719 -94141634 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 148523160 148523188 -94141165 + AT_rich Low_complexity Low_complexity 1 28 0 498 201 187 0 chr1 148523564 148523698 -94140655 + MER58B DNA MER1_type 183 341 0 2314 94 0 3 chr1 148523698 148524006 -94140347 + AluSg SINE Alu 1 307 -3 364 345 70 0 chr1 148524339 148524510 -94139843 - L3 LINE CR1 -318 1259 1077 493 322 59 51 chr1 148524563 148524799 -94139554 - L3 LINE CR1 -696 881 644 958 153 11 17 chr1 148524968 148525145 -94139208 - AluSg/x SINE Alu -7 305 130 2086 97 3 3 chr1 148525163 148525452 -94138901 - AluSq SINE Alu -24 289 1 2297 69 7 10 chr1 148525555 148525861 -94138492 - AluY SINE Alu -6 305 1 452 315 19 0 chr1 148525867 148525975 -94138378 + MER115 DNA AcHobo 2 111 -582 272 259 102 88 chr1 148525995 148526200 -94138153 + MLT1K LTR MaLR 352 559 -29 302 214 0 0 chr1 148526212 148526268 -94138085 + Tigger5 DNA MER2_type 22 77 -2246 341 250 0 0 chr1 148526269 148526341 -94138012 - Tigger5 DNA MER2_type -3 2320 2249 2363 82 3 0 chr1 148526359 148526662 -94137691 - AluSp SINE Alu -9 304 1 460 157 0 0 chr1 148526662 148526732 -94137621 + Tigger5 DNA MER2_type 2254 2323 0 1595 126 65 110 chr1 148526760 148526932 -94137421 - LTR8A LTR ERV1 -2 725 576 2438 68 0 0 chr1 148526932 148527242 -94137111 - AluY SINE Alu 0 311 2 1595 126 65 110 chr1 148527242 148527425 -94136928 - LTR8A LTR ERV1 -151 576 386 825 198 6 38 chr1 148527479 148527636 -94136717 + FRAM SINE Alu 1 152 -14 2124 125 0 10 chr1 148527659 148527972 -94136381 - AluSq SINE Alu -3 310 1 272 161 32 0 chr1 148527998 148528060 -94136293 - L1MB2 LINE L1 -3 6168 6105 2025 113 10 3 chr1 148528066 148528366 -94135987 - AluSx SINE Alu -10 302 1 188 83 0 56 chr1 148529097 148529133 -94135220 + (TCC)n Simple_repeat Simple_repeat 2 35 0 274 325 97 72 chr1 148529900 148530137 -94134216 + L2 LINE L2 3026 3268 -4 2233 99 0 0 chr1 148530330 148530622 -94133731 - AluSx SINE Alu -20 292 1 229 262 40 71 chr1 148530818 148530944 -94133409 - L1MC/D LINE L1 -1896 5912 5791 * 659 238 61 78 chr1 148530941 148531010 -94133343 + L1MC/D LINE L1 5257 5326 -2482 2027 157 27 55 chr1 148531010 148531411 -94132942 + MLT1B LTR MaLR 1 390 0 5286 206 49 53 chr1 148531411 148532787 -94131566 + MLT1B-int LTR MaLR 1 1370 -1 2192 160 18 13 chr1 148532788 148533176 -94131177 + MLT1B LTR MaLR 1 390 0 659 238 61 78 chr1 148533176 148533247 -94131106 + L1MC/D LINE L1 5325 5396 -2412 1685 181 7 3 chr1 148533247 148533550 -94130803 + AluSx SINE Alu 1 304 -8 659 238 61 78 chr1 148533550 148533766 -94130587 + L1MC/D LINE L1 5396 5611 -2197 984 167 17 92 chr1 148533768 148534007 -94130346 + AluJo SINE Alu 1 221 -91 315 71 0 0 chr1 148534051 148534093 -94130260 + (TAA)n Simple_repeat Simple_repeat 1 42 0 640 240 0 0 chr1 148534108 148534237 -94130116 + FLAM_A SINE Alu 1 129 -4 341 211 14 164 chr1 148534237 148534445 -94129908 + L1MC/D LINE L1 5603 5779 -2029 12993 196 57 34 chr1 148534606 148537644 -94126709 + L1PB4 LINE L1 1 2966 -3882 369 0 0 0 chr1 148537644 148537685 -94126668 + (TG)n Simple_repeat Simple_repeat 1 41 0 12993 196 57 34 chr1 148537685 148539407 -94124946 + L1PB4 LINE L1 2966 4646 -2202 1820 163 0 7 chr1 148539407 148539701 -94124652 - AluJb SINE Alu -20 292 1 12993 196 57 34 chr1 148539701 148540136 -94124217 + L1PB4 LINE L1 4646 5069 -1779 1840 141 7 0 chr1 148540136 148540427 -94123926 - AluSq SINE Alu -20 293 1 12993 196 57 34 chr1 148540427 148540691 -94123662 + L1PB4 LINE L1 5069 5597 -1251 243 0 0 0 chr1 148540698 148540725 -94123628 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4911 145 25 26 chr1 148541614 148542881 -94121472 + L1PB4 LINE L1 5595 6858 0 1729 159 33 26 chr1 148542882 148543311 -94121042 + L1MA4A LINE L1 5810 6300 0 218 298 70 53 chr1 148543926 148544040 -94120313 + MIR SINE MIR 76 191 -71 500 302 99 0 chr1 148544945 148545131 -94119222 - MIR SINE MIR -20 242 35 252 0 0 0 chr1 148545536 148545564 -94118789 + (TG)n Simple_repeat Simple_repeat 2 29 0 2016 117 7 0 chr1 148546749 148547040 -94117313 + AluSc SINE Alu 14 306 -3 264 149 0 0 chr1 148547314 148547361 -94116992 + (TG)n Simple_repeat Simple_repeat 2 48 0 1303 211 25 173 chr1 148547516 148548192 -94116161 + MLT1E LTR MaLR 18 593 0 320 194 0 0 chr1 148548192 148548254 -94116099 + MLT1K LTR MaLR 504 565 -23 748 278 86 0 chr1 148548540 148548749 -94115604 - MIR SINE MIR -5 257 31 270 236 0 101 chr1 148548835 148548924 -94115429 + MER96 DNA MER1_type? 96 175 0 560 291 0 0 chr1 148549222 148549387 -94114966 - MIR SINE MIR 0 262 98 961 114 0 0 chr1 148550212 148550344 -94114009 + AluSp SINE Alu 1 132 -181 1695 74 7 70 chr1 148550347 148550618 -94113735 + AluSq SINE Alu 39 292 -21 1529 183 0 135 chr1 148550873 148550922 -94113431 + MLT1A1 LTR MaLR 1 55 -310 2099 122 3 0 chr1 148550922 148551218 -94113135 - AluSx SINE Alu -15 297 1 1529 183 0 135 chr1 148551218 148551590 -94112763 + MLT1A1 LTR MaLR 55 365 0 189 0 0 0 chr1 148551858 148551879 -94112474 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1818 136 3 3 chr1 148551883 148552169 -94112184 - AluJb SINE Alu -26 286 1 26 0 0 0 chr1 148552278 148552304 -94112049 + AT_rich Low_complexity Low_complexity 1 26 0 279 238 32 0 chr1 148552413 148552476 -94111877 - MIR SINE MIR -157 105 41 461 270 61 49 chr1 148552512 148552675 -94111678 + L2 LINE L2 3106 3270 -2 1003 205 78 37 chr1 148552753 148553021 -94111332 - MLT2B2 LTR ERVL 0 515 237 235 302 41 70 chr1 148553239 148553411 -94110942 - L2 LINE L2 -463 2851 2685 258 229 0 0 chr1 148553743 148553813 -94110540 + (TG)n Simple_repeat Simple_repeat 1 70 0 5609 26 3 3 chr1 148554390 148555041 -94109312 - L1PA3 LINE L1 0 6155 5505 44193 41 6 1 chr1 148555041 148560346 -94104007 - L1P LINE L1 -822 5333 1 2108 112 3 3 chr1 148560497 148560793 -94103560 + AluSp SINE Alu 1 296 -17 290 207 41 88 chr1 148560794 148560896 -94103457 - MIR SINE MIR -63 145 91 180 300 33 44 chr1 148561204 148561294 -94103059 - L2 LINE L2 -5 3267 3179 782 250 30 25 chr1 148561323 148561550 -94102803 + MIR SINE MIR 1 227 -35 630 252 69 6 chr1 148562656 148562843 -94101510 - MIR SINE MIR -56 206 14 388 214 90 0 chr1 148563010 148563099 -94101254 + MIR SINE MIR 84 180 -82 225 349 0 35 chr1 148563707 148563793 -94100560 + MER5B DNA MER1_type 21 103 -75 187 173 260 48 chr1 148563846 148563950 -94100403 + MIR SINE MIR 106 231 -31 2089 202 100 7 chr1 148564067 148564527 -94099826 - REP3 LTR ERV -59 503 1 346 349 41 18 chr1 148565040 148565209 -94099144 - MIR SINE MIR -71 191 19 405 263 156 68 chr1 148565842 148566047 -94098306 + MIR SINE MIR 32 254 -8 187 275 105 70 chr1 148568318 148568518 -94095835 + L2 LINE L2 2537 2743 -571 1352 164 46 0 chr1 148568527 148568807 -94095546 + L1MA7 LINE L1 5996 6288 -3 317 314 8 48 chr1 148568875 148568999 -94095354 - L2 LINE L2 0 3272 3154 198 329 100 0 chr1 148569948 148570018 -94094335 + L2 LINE L2 3013 3089 -224 534 232 142 0 chr1 148570032 148570187 -94094166 + MER93b LTR ERV1 1 177 -196 811 182 0 21 chr1 148570187 148570330 -94094023 - FLAM_C SINE Alu -2 141 2 303 279 37 62 chr1 148570334 148570495 -94093858 + L2 LINE L2 3156 3312 -1 1111 249 22 63 chr1 148570871 148571377 -94092976 + HAL1 LINE L1 767 1251 -1256 1611 186 85 12 chr1 148571379 148571558 -94092795 - MSTD LTR MaLR 0 396 232 321 47 0 0 chr1 148571558 148571601 -94092752 + (TG)n Simple_repeat Simple_repeat 1 43 0 1611 186 85 12 chr1 148571601 148571749 -94092604 - MSTD LTR MaLR -164 232 45 673 216 120 60 chr1 148571780 148572114 -94092239 + HAL1 LINE L1 2036 2389 -118 21 82 0 0 chr1 148572213 148572262 -94092091 + AT_rich Low_complexity Low_complexity 1 49 0 199 346 162 7 chr1 148573436 148573572 -94090781 + L2 LINE L2 3107 3263 -9 2088 174 154 22 chr1 148573577 148574070 -94090283 - LTR64 LTR ERVK 0 558 1 2226 120 3 25 chr1 148574438 148574755 -94089598 + AluSx SINE Alu 1 310 -2 333 256 13 0 chr1 148574989 148575067 -94089286 + MIR3 SINE MIR 118 196 -12 275 262 12 24 chr1 148575089 148575173 -94089180 - L2 LINE L2 -45 3268 3186 437 241 28 41 chr1 148575897 148576042 -94088311 - MIR SINE MIR -42 220 78 539 139 10 0 chr1 148576073 148576174 -94088179 + CT-rich Low_complexity Low_complexity 1 102 0 2578 178 44 48 chr1 148576650 148576839 -94087514 + MLT2B1 LTR ERVL 1 189 -331 1699 129 17 31 chr1 148576839 148577133 -94087220 + L1MA5A LINE L1 6003 6292 -5 2504 135 8 0 chr1 148577133 148577512 -94086841 + L1PA13 LINE L1 5782 6163 0 2578 178 44 48 chr1 148577512 148577843 -94086510 + MLT2B1 LTR ERVL 187 520 0 33590 160 30 17 chr1 148577846 148578226 -94086127 + ERVL-B1 LTR ERVL 4 378 -5386 2489 82 0 0 chr1 148578226 148578529 -94085824 + AluSx SINE Alu 1 303 -9 180 0 0 0 chr1 148578529 148578549 -94085804 + (TA)n Simple_repeat Simple_repeat 2 21 0 33590 160 30 17 chr1 148578549 148582775 -94081578 + ERVL-B1 LTR ERVL 378 4699 -1065 1741 216 17 3 chr1 148582775 148583131 -94081222 - MLT1A1 LTR MaLR 0 365 5 33590 160 30 17 chr1 148583131 148584204 -94080149 + ERVL-B1 LTR ERVL 4699 5757 -7 1942 214 65 63 chr1 148584205 148584413 -94079940 + MLT2B3 LTR ERVL 2 208 -346 709 200 23 0 chr1 148584413 148584543 -94079810 + FLAM_A SINE Alu 1 133 0 210 37 0 0 chr1 148584548 148584575 -94079778 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1942 214 65 63 chr1 148584575 148584912 -94079441 + MLT2B3 LTR ERVL 211 554 0 204 277 62 0 chr1 148584942 148585007 -94079346 + L2 LINE L2 3096 3164 -108 42 20 0 0 chr1 148585100 148585149 -94079204 + AT_rich Low_complexity Low_complexity 1 49 0 315 0 0 0 chr1 148585178 148585213 -94079140 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 233 227 0 0 chr1 148585296 148585340 -94079013 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 405 293 27 7 chr1 148586151 148586301 -94078052 + L2 LINE L2 2553 2705 -609 610 266 184 31 chr1 148586307 148586698 -94077655 + L2 LINE L2 2863 3313 0 277 319 115 11 chr1 148587410 148587592 -94076761 - L1ME4a LINE L1 -47 6074 5874 1883 158 0 14 chr1 148587646 148587938 -94076415 - AluJb SINE Alu -24 288 1 1172 104 0 37 chr1 148587947 148588111 -94076242 - AluSg/x SINE Alu -7 305 148 332 160 67 0 chr1 148588115 148588190 -94076163 - L1PA16 LINE L1 -1 6165 6086 2265 88 0 10 chr1 148588202 148588497 -94075856 - AluSx SINE Alu -20 292 1 288 171 95 0 chr1 148588635 148588709 -94075644 - MER31A LTR ERV1 -26 440 351 187 267 208 30 chr1 148588896 148588959 -94075394 + L2 LINE L2 3153 3203 -69 2153 128 0 0 chr1 148588959 148589257 -94075096 - AluSq SINE Alu -15 298 1 187 267 208 30 chr1 148589257 148589294 -94075059 + L2 LINE L2 3203 3271 -1 438 69 0 0 chr1 148591506 148591564 -94072789 + (TA)n Simple_repeat Simple_repeat 1 58 0 423 0 0 0 chr1 148591563 148591610 -94072743 + (GA)n Simple_repeat Simple_repeat 2 48 0 * 505 254 18 0 chr1 148592169 148592279 -94072074 + MER81 DNA DNA 1 112 -2 344 275 92 0 chr1 148592846 148592955 -94071398 + L2 LINE L2 3153 3271 -1 254 136 0 34 chr1 148593794 148593853 -94070500 + (TAA)n Simple_repeat Simple_repeat 3 59 0 303 342 42 8 chr1 148594551 148594671 -94069682 - MIR SINE MIR -85 177 54 647 226 36 12 chr1 148594729 148594897 -94069456 - L3 LINE CR1 -7 1570 1399 1870 129 3 64 chr1 148595718 148596029 -94068324 - AluSx SINE Alu -20 292 1 426 250 47 21 chr1 148596029 148596166 -94068187 - MIR SINE MIR -68 140 50 4317 110 3 3 chr1 148596281 148596883 -94067470 + LTR43 LTR ERV1 1 602 0 807 183 112 37 chr1 148597068 148597309 -94067044 + ORSL DNA AcHobo 1 259 -16 1138 229 5 0 chr1 148597642 148597865 -94066488 + MER58A DNA MER1_type 1 224 0 248 283 30 30 chr1 148597915 148598014 -94066339 - MIR SINE MIR -154 108 10 236 293 152 10 chr1 148599290 148599389 -94064964 - L2 LINE L2 0 3272 3160 1850 149 0 0 chr1 148599448 148599716 -94064637 + AluJb SINE Alu 11 278 -34 214 350 38 51 chr1 148600587 148600744 -94063609 - MIR3 SINE MIR -52 156 2 414 278 119 7 chr1 148601486 148601637 -94062716 - MIR3 SINE MIR -1 207 40 202 184 0 0 chr1 148602208 148602256 -94062097 - MIR SINE MIR -109 153 107 325 278 195 24 chr1 148602487 148602692 -94061661 + MIR SINE MIR 20 259 -3 252 366 46 7 chr1 148602696 148602849 -94061504 - MIR SINE MIR -49 213 55 1782 181 68 23 chr1 148604244 148604834 -94059519 - L1MC/D LINE L1 -743 5797 5343 877 162 76 16 chr1 148604880 148605065 -94059288 - L1MC/D LINE L1 -4661 1879 1684 495 237 26 26 chr1 148605076 148605232 -94059121 - L1M4 LINE L1 -1198 4948 4793 * 5609 206 64 61 chr1 148605214 148605720 -94058633 - L1MDa LINE L1 -3979 2561 2058 2160 135 3 0 chr1 148605720 148606024 -94058329 - AluSx SINE Alu -7 305 1 5609 206 64 61 chr1 148606024 148606684 -94057669 - L1MDa LINE L1 -4482 2058 1401 1996 134 24 0 chr1 148606684 148606982 -94057371 - AluSx SINE Alu -7 305 1 5609 206 64 61 chr1 148606982 148607934 -94056419 - L1MDa LINE L1 -5139 1401 34 708 298 105 13 chr1 148608208 148608756 -94055597 + L1M4 LINE L1 3653 4276 -1870 257 174 139 47 chr1 148609385 148609471 -94054882 + L2 LINE L2 1958 2051 -1263 2752 146 10 5 chr1 148609476 148609887 -94054466 + MSTB LTR MaLR 1 413 -13 2341 274 115 2 chr1 148609887 148610941 -94053412 + L2 LINE L2 2125 3313 0 5959 51 0 9 chr1 148611272 148612011 -94052342 + L1PA7 LINE L1 5419 6150 -4 400 114 71 0 chr1 148612090 148612160 -94052193 - L1PA13 LINE L1 0 6163 6089 726 76 88 6 chr1 148612160 148612322 -94052031 - L1ME LINE L1 -312 5809 5644 1479 189 11 18 chr1 148612325 148612610 -94051743 + AluJo SINE Alu 17 299 -13 267 103 0 0 chr1 148612712 148612751 -94051602 + (TA)n Simple_repeat Simple_repeat 1 39 0 2042 148 0 3 chr1 148612751 148613055 -94051298 - AluJb SINE Alu -9 303 1 1547 148 126 7 chr1 148613694 148613972 -94050381 + MSTB LTR MaLR 1 311 -115 1178 167 10 10 chr1 148614063 148614299 -94050054 - MSTB1-int LTR MaLR -1432 303 2 292 152 0 0 chr1 148614301 148614347 -94050006 - MSTB1 LTR MaLR 0 432 387 239 234 0 0 chr1 148614347 148614394 -94049959 + MST-int LTR MaLR 1139 1185 -466 204 40 0 0 chr1 148614454 148614479 -94049874 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 * 634 34 34 0 chr1 148614478 148614566 -94049787 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 2166 90 0 0 chr1 148614566 148614843 -94049510 - AluSc SINE Alu -32 277 1 367 322 210 20 chr1 148614852 148615508 -94048845 + L2 LINE L2 2040 2820 -494 992 148 13 0 chr1 148615625 148615813 -94048540 + AluSc SINE Alu 132 321 0 777 174 174 92 chr1 148616436 148616981 -94047372 - LTR36 LTR ERV1 0 611 1 4290 150 37 4 chr1 148617234 148617916 -94046437 - MER50 LTR ERV1 -30 704 1 2468 123 24 5 chr1 148617916 148618291 -94046062 - MER50-int LTR ERV1 -9 7196 6815 1008 144 0 7 chr1 148618280 148618433 -94045920 - MER50-int LTR ERV1 -994 6211 6060 * 2446 92 0 13 chr1 148618957 148619274 -94045079 - AluSp SINE Alu 0 313 1 301 231 0 0 chr1 148620247 148620312 -94044041 + HERVK22 LTR ERVK 3811 3875 -2962 6951 224 105 84 chr1 148620980 148624190 -94040163 - MER50-int LTR ERV1 -1141 6064 2789 4027 129 15 20 chr1 148624191 148624801 -94039552 - MER50-int LTR ERV1 -5363 1842 1236 849 107 8 0 chr1 148624803 148624947 -94039406 - AluSg/x SINE Alu 0 318 174 5213 142 5 22 chr1 148624947 148625859 -94038494 - MER50-int LTR ERV1 -5962 1243 267 894 161 19 0 chr1 148625856 148626011 -94038342 - MER50-int LTR ERV1 -7047 158 1 * 768 141 8 8 chr1 148626012 148626140 -94038213 - MER50 LTR ERV1 -284 450 323 1994 170 0 0 chr1 148626141 148626447 -94037906 - AluSx SINE Alu -2 310 5 912 133 21 0 chr1 148626447 148626590 -94037763 - MER50 LTR ERV1 -588 146 1 473 296 17 22 chr1 148626957 148627136 -94037217 + MIR SINE MIR 9 186 -76 183 260 55 0 chr1 148627191 148627264 -94037089 + MIR SINE MIR 173 249 -13 1740 191 77 27 chr1 148627741 148628179 -94036174 - LTR56 LTR ERV1 0 445 9 643 134 0 0 chr1 148628232 148628329 -94036024 - AluSq/x SINE Alu -182 131 35 930 230 369 62 chr1 148628329 148628768 -94035585 + MER52A LTR ERV1 660 1233 -522 554 266 31 79 chr1 148629105 148629334 -94035019 + MER52A LTR ERV1 1237 1454 -301 242 164 0 24 chr1 148629355 148629478 -94034875 + AluJb SINE Alu 69 279 -23 2798 132 5 2 chr1 148629721 148630167 -94034186 - L1MA5 LINE L1 0 6300 5854 2393 118 10 51 chr1 148630345 148630662 -94033691 + THE1C LTR MaLR 1 302 -73 1889 136 29 0 chr1 148630662 148630976 -94033377 + AluSx SINE Alu 1 322 0 2393 118 10 51 chr1 148630976 148631048 -94033305 + THE1C LTR MaLR 302 375 0 556 275 31 0 chr1 148633058 148633218 -94031135 - MIR SINE MIR -17 245 81 363 324 156 32 chr1 148633312 148633652 -94030701 + L2 LINE L2 2891 3272 0 355 286 34 32 chr1 148633881 148634086 -94030267 + MIR SINE MIR 2 212 -50 388 241 23 0 chr1 148634252 148634339 -94030014 - MLT1G1 LTR MaLR 0 595 507 569 289 74 11 chr1 148634501 148634691 -94029662 - MLT1G LTR MaLR -380 210 9 759 322 35 20 chr1 148634693 148635090 -94029263 + L2 LINE L2 2349 2751 -563 210 343 190 19 chr1 148635144 148635555 -94028798 + L2 LINE L2 2833 3313 0 200 261 0 0 chr1 148635569 148635634 -94028719 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 * 224 229 0 0 chr1 148635587 148635635 -94028718 + GA-rich Low_complexity Low_complexity 1 48 0 235 100 0 0 chr1 148636709 148636749 -94027604 - MER41A LTR ERV1 -87 467 428 2132 112 17 3 chr1 148637053 148637340 -94027013 + AluSq SINE Alu 1 291 -22 1234 154 23 45 chr1 148637464 148637684 -94026669 + MER20 DNA MER1_type 1 215 -4 255 256 115 0 chr1 148637797 148637875 -94026478 + L2 LINE L2 3146 3232 -40 606 253 82 5 chr1 148637913 148638107 -94026246 + MER69 DNA AcHobo 127 335 -2191 195 219 0 0 chr1 148638189 148638230 -94026123 + L2 LINE L2 3273 3313 0 489 206 49 89 chr1 148638576 148638823 -94025530 - MER69 DNA AcHobo -11 2515 2279 1260 234 146 3 chr1 148638919 148639282 -94025071 - MER69 DNA AcHobo -2111 415 1 718 263 58 71 chr1 148639460 148639870 -94024483 + L2 LINE L2 2820 3224 -89 915 101 101 0 chr1 148639878 148640027 -94024326 + HERVK11 LTR ERVK 688 851 -7102 26029 87 16 3 chr1 148640027 148643410 -94020943 + HERVK11 LTR ERVK 1165 4590 -3363 8795 40 0 0 chr1 148643410 148644379 -94019974 - LTR5 LTR ERVK 0 969 1 447 64 11 160 chr1 148644379 148644473 -94019880 - SVA Other Other -450 936 857 61798 32 2 9 chr1 148644473 148651673 -94012680 - HERVK LTR ERVK -95 7148 1 9421 8 0 0 chr1 148651673 148652642 -94011711 - LTR5 LTR ERVK 0 969 1 17042 81 4 2 chr1 148652642 148654819 -94009534 + HERVK11 LTR ERVK 4585 6765 -1188 8181 64 2 0 chr1 148654803 148655801 -94008552 + HERVK11 LTR ERVK 6954 7953 0 * 8680 69 3 2 chr1 148655801 148656871 -94007482 + MER11C LTR ERVK 1 1071 0 278 235 59 0 chr1 148656872 148656940 -94007413 + L2 LINE L2 3226 3297 -16 4084 131 17 12 chr1 148657067 148657716 -94006637 + MER39B LTR ERV1 1 652 -1 287 256 23 12 chr1 148659038 148659124 -94005229 + MIR SINE MIR 33 119 -143 377 172 82 131 chr1 148659857 148659979 -94004374 + MER63C DNA MER1_type 1 612 -318 229 257 143 0 chr1 148659989 148660059 -94004294 + MER63C DNA MER1_type 849 928 -2 231 240 202 19 chr1 148660756 148660860 -94003493 - MIR SINE MIR -120 142 20 207 0 0 0 chr1 148660871 148660894 -94003459 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 190 79 26 26 chr1 148660903 148660941 -94003412 + (TTCTC)n Simple_repeat Simple_repeat 3 40 0 1599 163 19 50 chr1 148660942 148661261 -94003092 - AluJo SINE Alu -3 309 1 280 302 12 0 chr1 148661293 148661379 -94002974 - L2 LINE L2 0 3313 3227 218 265 116 61 chr1 148662349 148662496 -94001857 + MIR3 SINE MIR 35 189 -19 439 278 111 32 chr1 148662861 148663077 -94001276 + MIR SINE MIR 7 239 -23 193 197 30 15 chr1 148663810 148663876 -94000477 + CT-rich Low_complexity Low_complexity 5 71 0 22 0 0 0 chr1 148664631 148664653 -93999700 + AT_rich Low_complexity Low_complexity 1 22 0 402 287 28 7 chr1 148665379 148665522 -93998831 + MLT1J2 LTR MaLR 2 147 -303 321 89 0 0 chr1 148666196 148666241 -93998112 + (CA)n Simple_repeat Simple_repeat 1 45 0 2104 180 40 12 chr1 148666456 148666879 -93997474 - MER45B DNA AcHobo 0 1040 606 1093 218 143 44 chr1 148666897 148667190 -93997163 - MER45B DNA AcHobo -711 329 8 823 201 11 11 chr1 148667313 148667487 -93996866 + FAM SINE Alu 1 174 -1 291 178 278 22 chr1 148667721 148667811 -93996542 - MER5A DNA MER1_type 0 189 77 2362 61 10 14 chr1 148668129 148668424 -93995929 - AluY SINE Alu -17 294 1 261 253 0 0 chr1 148672449 148672595 -93991758 + CT-rich Low_complexity Low_complexity 1 146 0 380 249 60 35 chr1 148673503 148673704 -93990649 + L1M4c LINE L1 1923 2128 -4256 4625 215 28 50 chr1 148673707 148674853 -93989500 + L1M4c LINE L1 2216 3284 -3098 1635 181 22 7 chr1 148674853 148675159 -93989194 + AluJo SINE Alu 1 310 0 4625 215 28 50 chr1 148675159 148675547 -93988806 + L1M4c LINE L1 3284 3679 -2703 1694 266 62 55 chr1 148675571 148676008 -93988345 + L1MC4 LINE L1 7097 7544 -498 2029 87 33 29 chr1 148676008 148676283 -93988070 + AluSg SINE Alu 23 298 -12 1694 266 62 55 chr1 148676283 148676693 -93987660 + L1MC4 LINE L1 7544 7950 -92 21 0 0 0 chr1 148676767 148676788 -93987565 + AT_rich Low_complexity Low_complexity 1 21 0 240 276 38 19 chr1 148677447 148677552 -93986801 + L2 LINE L2 2932 3038 -234 449 303 154 9 chr1 148678034 148678255 -93986098 + MIR SINE MIR 4 256 -6 184 231 0 0 chr1 148678329 148678368 -93985985 + MIR SINE MIR 111 149 -59 270 155 103 0 chr1 148678674 148678732 -93985621 - L2 LINE L2 -4 3268 3205 274 320 61 82 chr1 148678909 148679379 -93984974 + L2 LINE L2 2227 2686 -628 2165 116 10 13 chr1 148679379 148679690 -93984663 - AluSq SINE Alu -1 312 3 274 320 61 82 chr1 148679690 148679759 -93984594 + L2 LINE L2 2686 2755 -559 1268 220 94 51 chr1 148680029 148680424 -93983929 - LTR16A LTR ERVL -23 427 16 191 352 28 0 chr1 148680458 148680529 -93983824 - MIR SINE MIR -64 144 72 9807 212 8 10 chr1 148680610 148682824 -93981529 + L1 LINE L1 3107 5315 -831 1989 162 140 3 chr1 148682825 148683190 -93981163 - MSTB LTR MaLR -1 425 11 5061 159 14 5 chr1 148683200 148684047 -93980306 + L1PA16 LINE L1 5312 6166 0 3023 164 4 6 chr1 148684224 148684711 -93979642 + MER66B LTR ERV1 1 486 0 383 196 11 43 chr1 148685162 148685254 -93979099 + MIR SINE MIR 66 154 -108 499 315 30 25 chr1 148686947 148687147 -93977206 - MIR SINE MIR -24 238 38 1755 167 13 29 chr1 148687262 148687568 -93976785 - AluJo SINE Alu 0 312 12 1886 171 231 13 chr1 148687657 148688107 -93976246 - MLT2B3 LTR ERVL -2 552 5 6636 115 9 10 chr1 148690331 148691288 -93973065 - LTR5 LTR ERVK -13 956 1 416 265 96 18 chr1 148691321 148691487 -93972866 + MIR SINE MIR 21 199 -63 1360 244 41 39 chr1 148691853 148692267 -93972086 - MLT1C LTR MaLR 0 467 53 3500 198 40 27 chr1 148692769 148693577 -93970776 + MER63C DNA MER1_type 1 818 -112 397 129 16 0 chr1 148693574 148693636 -93970717 - FAM SINE Alu -8 167 105 * 2061 151 16 37 chr1 148693636 148694019 -93970334 - THE1C LTR MaLR 0 375 1 574 176 0 0 chr1 148694063 148694154 -93970199 - AluJo SINE Alu -86 226 136 375 124 0 135 chr1 148694154 148694243 -93970110 + MER63C DNA MER1_type 808 884 -46 22 0 0 0 chr1 148694243 148694265 -93970088 + AT_rich Low_complexity Low_complexity 1 22 0 559 227 25 0 chr1 148694265 148694384 -93969969 - AluJo SINE Alu -186 126 5 271 210 81 32 chr1 148694388 148694450 -93969903 + MER63C DNA MER1_type 866 930 0 5558 93 27 25 chr1 148694792 148695600 -93968753 + L1MA3 LINE L1 5457 6269 -36 429 109 0 0 chr1 148695600 148695664 -93968689 + (CA)n Simple_repeat Simple_repeat 1 64 0 5558 93 27 25 chr1 148695664 148695702 -93968651 + L1MA3 LINE L1 6269 6305 0 1133 124 6 0 chr1 148698339 148698500 -93965853 - L1MC1 LINE L1 -2 6331 6170 210 258 32 0 chr1 148698867 148698929 -93965424 + L2 LINE L2 3248 3311 -2 * 609 262 21 37 chr1 148698924 148699111 -93965242 - MIR SINE MIR 0 262 79 1098 206 4 0 chr1 148699568 148699796 -93964557 + L1MA4 LINE L1 6061 6289 -11 2066 204 74 66 chr1 148699834 148700499 -93963854 - LTR68 LTR ERV1 -1 739 2 517 225 85 8 chr1 148700823 148700952 -93963401 - L2 LINE L2 0 3272 3134 245 302 0 8 chr1 148701877 148702000 -93962353 + T-rich Low_complexity Low_complexity 1 189 0 317 311 0 0 chr1 148702999 148703089 -93961264 + L1MC4 LINE L1 6614 6703 -1339 2792 254 156 31 chr1 148703155 148703900 -93960453 - L2 LINE L2 0 3313 2662 2257 104 0 3 chr1 148703900 148704198 -93960155 + AluSx SINE Alu 1 297 -15 2792 254 156 31 chr1 148704198 148705220 -93959133 - L2 LINE L2 -651 2662 1311 291 203 154 0 chr1 148705536 148705612 -93958741 + MIR SINE MIR 36 121 -87 375 374 68 0 chr1 148706663 148706810 -93957543 + MER91A DNA MER1_type 15 171 -25 541 271 44 48 chr1 148707385 148707558 -93956795 + MIR SINE MIR 20 193 -69 2351 74 0 27 chr1 148707558 148707855 -93956498 + AluY SINE Alu 11 299 -12 541 271 44 48 chr1 148707855 148707910 -93956443 + MIR SINE MIR 193 247 -15 201 132 0 0 chr1 148708077 148708115 -93956238 + (CA)n Simple_repeat Simple_repeat 1 38 0 352 316 29 12 chr1 148709456 148709629 -93954724 - MIR SINE MIR -50 212 38 195 331 124 0 chr1 148710261 148710382 -93953971 + MIR SINE MIR 4 139 -123 395 243 230 0 chr1 148710407 148710555 -93953798 - MIR SINE MIR -24 238 57 23 86 0 0 chr1 148710620 148710678 -93953675 + AT_rich Low_complexity Low_complexity 1 58 0 243 258 90 11 chr1 148711101 148711190 -93953163 + MIR3 SINE MIR 105 200 -8 1844 149 71 86 chr1 148711237 148711527 -93952826 - MLT1B LTR MaLR 0 390 106 1572 170 111 54 chr1 148711527 148711969 -93952384 - MLT1C LTR MaLR 0 467 1 1844 149 71 86 chr1 148711969 148712074 -93952279 - MLT1B LTR MaLR -284 106 1 270 360 75 36 chr1 148712310 148712588 -93951765 - L2 LINE L2 -47 3225 2937 365 282 58 37 chr1 148712619 148712807 -93951546 - L2 LINE L2 -555 2759 2568 257 288 129 22 chr1 148713613 148713752 -93950601 - MLT1J LTR MaLR -353 158 5 21 0 0 0 chr1 148714066 148714087 -93950266 + AT_rich Low_complexity Low_complexity 1 21 0 2406 130 25 0 chr1 148715257 148715612 -93948741 - THE1B LTR MaLR 0 364 1 204 323 121 0 chr1 148715998 148716097 -93948256 - L2 LINE L2 -1 3271 3161 688 311 31 5 chr1 148716130 148716352 -93948001 - MIR SINE MIR -3 259 32 304 265 88 77 chr1 148716720 148716901 -93947452 + MIR3 SINE MIR 18 200 -8 390 42 0 0 chr1 148717554 148717602 -93946751 + (CA)n Simple_repeat Simple_repeat 2 49 0 576 244 22 0 chr1 148718362 148718497 -93945856 + MIR SINE MIR 124 261 -1 370 354 151 5 chr1 148720616 148720808 -93943545 + MIR SINE MIR 2 221 -41 330 98 0 0 chr1 148720824 148720875 -93943478 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 376 266 152 38 chr1 148721013 148721171 -93943182 - MIR3 SINE MIR -20 188 13 339 65 0 0 chr1 148721539 148721585 -93942768 + (CA)n Simple_repeat Simple_repeat 2 47 0 2290 122 0 0 chr1 148721845 148722148 -93942205 - AluSg SINE Alu -7 303 1 380 239 49 7 chr1 148722317 148722459 -93941894 + L1MC4a LINE L1 5787 5934 -1874 1059 133 71 5 chr1 148722487 148722683 -93941670 - MER3 DNA MER1_type 0 209 1 664 306 110 0 chr1 148723258 148723477 -93940876 - MIR SINE MIR 0 262 20 328 289 63 42 chr1 148723749 148723939 -93940414 + MIR3 SINE MIR 15 208 0 461 95 0 0 chr1 148724692 148724766 -93939587 - MER3 DNA MER1_type -12 197 124 240 100 0 0 chr1 148725003 148725043 -93939310 + (CA)n Simple_repeat Simple_repeat 2 41 0 539 209 47 66 chr1 148725147 148725329 -93939024 - L1M4 LINE L1 -1419 4727 4548 2317 114 7 0 chr1 148725329 148725636 -93938717 - AluSx SINE Alu -3 309 1 539 209 47 66 chr1 148725636 148725664 -93938689 - L1M4 LINE L1 -1598 4548 4521 * 2249 258 27 43 chr1 148725657 148726249 -93938104 - L1ME3A LINE L1 -92 6147 5576 2178 118 0 10 chr1 148726249 148726553 -93937800 - AluSx SINE Alu -11 301 1 2249 258 27 43 chr1 148726553 148726919 -93937434 - L1ME3A LINE L1 -663 5576 5205 299 246 27 36 chr1 148726925 148727035 -93937318 - L1ME3A LINE L1 -2365 3850 3742 341 279 33 77 chr1 148727315 148727362 -93936991 - L1ME3A LINE L1 -2478 3737 3689 1310 231 69 33 chr1 148727362 148727813 -93936540 - MLT1C LTR MaLR 0 467 1 341 279 33 77 chr1 148727813 148727948 -93936405 - L1ME3A LINE L1 -2526 3689 3563 317 260 122 8 chr1 148727940 148728063 -93936290 - L1ME3A LINE L1 -4237 2159 2023 * 27 29 0 0 chr1 148728175 148728209 -93936144 + AT_rich Low_complexity Low_complexity 1 34 0 2234 104 0 0 chr1 148728832 148729130 -93935223 - AluSc SINE Alu -11 298 1 252 374 0 9 chr1 148729218 148729325 -93935028 - L3 LINE CR1 -14 1563 1458 490 265 172 0 chr1 148729329 148729480 -93934873 + MER5A DNA MER1_type 13 189 0 696 315 79 14 chr1 148729481 148729773 -93934580 - L3 LINE CR1 -106 1471 1161 413 294 48 7 chr1 148730275 148730421 -93933932 + MIR SINE MIR 56 207 -55 383 300 26 57 chr1 148730547 148730774 -93933579 + L3 LINE CR1 1355 1574 -3 1084 110 0 0 chr1 148731013 148731177 -93933176 + L1PA13 LINE L1 6000 6163 0 535 279 21 53 chr1 148731341 148731531 -93932822 + MER5A DNA MER1_type 1 184 -5 428 280 24 16 chr1 148731544 148731669 -93932684 + MER5B DNA MER1_type 1 126 -52 824 274 75 77 chr1 148734044 148734591 -93929762 - LTR67 LTR ERVL -10 547 2 1131 185 19 5 chr1 148735626 148735842 -93928511 - MER20 DNA MER1_type 0 219 1 306 283 61 20 chr1 148735960 148736059 -93928294 + MER5B DNA MER1_type 1 103 -75 235 210 148 25 chr1 148736348 148736429 -93927924 - L2 LINE L2 -1 3312 3222 17027 155 49 19 chr1 148736523 148740525 -93923828 + L1PBa LINE L1 6 4214 -2648 2282 106 0 0 chr1 148740525 148740828 -93923525 + AluY SINE Alu 1 303 -8 17027 155 49 19 chr1 148740828 148742205 -93922148 + L1PBa LINE L1 4214 5548 -1314 192 77 0 0 chr1 148742219 148742245 -93922108 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 6579 107 29 13 chr1 148742417 148743458 -93920895 - MER11C LTR ERVK -14 1057 1 280 329 0 0 chr1 148743704 148743783 -93920570 - MIR SINE MIR 0 262 184 324 315 117 25 chr1 148744060 148744222 -93920131 - L3 LINE CR1 -166 1411 1235 1072 141 56 86 chr1 148744239 148744508 -93919845 + LTR49 LTR ERV1 1 261 -334 465 259 7 0 chr1 148744532 148744667 -93919686 - LTR51 LTR ERV1 0 671 536 1952 186 0 0 chr1 148744675 148745055 -93919298 - AluJb SINE Alu 0 380 1 324 340 95 23 chr1 148745120 148745382 -93918971 - L1ME LINE L1 -5260 810 530 1596 208 81 19 chr1 148745770 148746141 -93918212 - MSTD LTR MaLR -2 394 1 5978 67 1 0 chr1 148746421 148747217 -93917136 - L1PA7 LINE L1 -8 6146 5350 912 93 0 0 chr1 148747219 148747358 -93916995 + L1P LINE L1 2636 2774 -3372 * 9503 88 4 1 chr1 148747352 148748742 -93915611 - L1PA7 LINE L1 -796 5350 3957 9253 167 135 17 chr1 148748733 148751846 -93912507 + L1MA7 LINE L1 2575 6128 -163 * 1583 91 0 0 chr1 148751846 148752072 -93912281 + AluY SINE Alu 87 312 0 9253 167 135 17 chr1 148752072 148752258 -93912095 + L1MA7 LINE L1 6128 6291 0 1214 179 28 0 chr1 148752277 148752495 -93911858 + MLT1A1 LTR MaLR 142 365 0 603 194 8 0 chr1 148752495 148752609 -93911744 - MER114 LTR ERV -517 131 17 32 101 0 0 chr1 148753023 148753132 -93911221 + AT_rich Low_complexity Low_complexity 1 109 0 22 0 0 0 chr1 148753169 148753191 -93911162 + AT_rich Low_complexity Low_complexity 1 22 0 2186 111 7 0 chr1 148753294 148753591 -93910762 + AluSx SINE Alu 1 299 -13 515 313 63 30 chr1 148753601 148753936 -93910417 - L2 LINE L2 -1360 1954 1609 378 91 0 0 chr1 148754384 148754439 -93909914 + (TG)n Simple_repeat Simple_repeat 2 56 0 1982 128 4 0 chr1 148754823 148755096 -93909257 + AluSx SINE Alu 1 274 -38 229 236 14 42 chr1 148755362 148755434 -93908919 - L3 LINE CR1 -334 1243 1174 597 305 41 0 chr1 148755607 148755804 -93908549 - MIR SINE MIR -2 260 56 183 146 0 0 chr1 148755915 148755956 -93908397 + (T)n Simple_repeat Simple_repeat 1 41 0 2298 106 0 0 chr1 148755985 148756288 -93908065 + AluSx SINE Alu 2 304 -8 2188 95 30 3 chr1 148756402 148756698 -93907655 + AluSq SINE Alu 1 304 -9 615 132 0 0 chr1 148756869 148756975 -93907378 - L1MA5A LINE L1 -3 6294 6189 569 310 117 57 chr1 148757392 148757868 -93906485 + L1MEd LINE L1 915 1515 -975 4415 123 53 22 chr1 148757942 148758721 -93905632 - HSMAR2 DNA Mariner -6 1296 494 11034 88 22 2 chr1 148758722 148760585 -93903768 + L1PA7 LINE L1 3826 5719 -435 189 0 0 0 chr1 148760585 148760606 -93903747 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 11034 88 22 2 chr1 148760606 148761048 -93903305 + L1PA7 LINE L1 5719 6151 -3 226 235 0 0 chr1 148761104 148761155 -93903198 + Tigger2 DNA MER2_type 481 531 -2187 8698 141 8 6 chr1 148761185 148762615 -93901738 + Tigger2 DNA MER2_type 1285 2717 -1 325 263 86 43 chr1 148762975 148763133 -93901220 + MIR3 SINE MIR 20 193 -15 350 222 6 42 chr1 148763227 148763394 -93900959 + (TTATA)n Simple_repeat Simple_repeat 5 165 0 555 303 14 95 chr1 148763501 148763795 -93900558 + L2 LINE L2 2999 3268 -4 453 276 75 17 chr1 148765545 148765719 -93898634 + MIR SINE MIR 74 257 -5 538 335 124 4 chr1 148766546 148766779 -93897574 - MIR SINE MIR 0 262 2 279 0 0 0 chr1 148767895 148767926 -93896427 + (TG)n Simple_repeat Simple_repeat 2 32 0 843 202 12 119 chr1 148768511 148768764 -93895589 - MIR SINE MIR -4 258 33 213 355 49 33 chr1 148768867 148769050 -93895303 - MIR SINE MIR -71 191 6 1258 183 4 30 chr1 148769298 148769533 -93894820 - AluJb SINE Alu 0 312 84 749 290 106 46 chr1 148769534 148769969 -93894384 - L2 LINE L2 -1 3312 2852 424 237 228 14 chr1 148770864 148771077 -93893276 - MIR SINE MIR 0 262 3 221 297 31 0 chr1 148771205 148771269 -93893084 - MIR SINE MIR -79 183 118 266 326 160 43 chr1 148771759 148772204 -93892149 + L2 LINE L2 1684 2180 -1134 1578 244 30 75 chr1 148772258 148772548 -93891805 - MLT1J LTR MaLR -26 485 226 1815 165 0 7 chr1 148772548 148772839 -93891514 - AluJb SINE Alu -21 291 3 1578 244 30 75 chr1 148772839 148773056 -93891297 - MLT1J LTR MaLR -285 226 1 204 441 56 0 chr1 148773603 148773746 -93890607 + L2 LINE L2 2904 3054 -218 354 98 0 0 chr1 148773851 148773902 -93890451 + (TG)n Simple_repeat Simple_repeat 2 52 0 351 273 111 69 chr1 148774374 148774520 -93889833 - MIR SINE MIR -3 259 100 1983 124 0 21 chr1 148774520 148774810 -93889543 + AluSx SINE Alu 22 305 -7 351 273 111 69 chr1 148774810 148774879 -93889474 - MIR SINE MIR -162 100 35 866 215 18 0 chr1 148775387 148775550 -93888803 - MER45A DNA AcHobo 0 178 13 405 308 100 0 chr1 148775777 148775897 -93888456 + L2 LINE L2 3127 3258 -14 293 272 22 111 chr1 148776693 148776873 -93887480 + L2 LINE L2 3135 3298 -15 383 242 44 0 chr1 148777038 148777129 -93887224 - L2 LINE L2 -4 3309 3215 237 315 134 27 chr1 148777271 148777420 -93886933 + MIR3 SINE MIR 38 202 -6 423 344 13 6 chr1 148778177 148778334 -93886019 + MIR SINE MIR 53 210 -52 4022 204 79 5 chr1 148778334 148779222 -93885131 - L1MD2 LINE L1 -4 6355 5402 466 281 85 18 chr1 148779321 148779485 -93884868 + MER5A DNA MER1_type 9 183 -6 863 175 26 0 chr1 148779500 148779654 -93884699 + MER33 DNA MER1_type 1 158 -166 6811 83 7 17 chr1 148779655 148781452 -93882901 - L1PA11 LINE L1 -1 6173 4382 18377 193 16 26 chr1 148781452 148782374 -93881979 - L1PA12 LINE L1 -1701 5883 4954 261 0 0 0 chr1 148782374 148782403 -93881950 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 18377 193 16 26 chr1 148782403 148785652 -93878701 - L1PA12 LINE L1 -2630 4954 907 630 178 71 6 chr1 148785652 148785821 -93878532 + MER33 DNA MER1_type 183 362 -1 581 219 41 16 chr1 148785949 148786072 -93878281 + L2 LINE L2 3188 3313 0 527 253 133 6 chr1 148786204 148786370 -93877983 + MIR SINE MIR 74 260 -2 230 182 23 0 chr1 148786923 148786967 -93877386 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 445 297 24 30 chr1 148786987 148787152 -93877201 - MIR SINE MIR -70 192 29 2397 57 13 23 chr1 148788038 148788339 -93876014 + AluY SINE Alu 1 298 -13 3694 172 96 63 chr1 148788352 148789252 -93875101 + MER63C DNA MER1_type 2 930 0 334 303 79 7 chr1 148790256 148790408 -93873945 + MIR3 SINE MIR 33 195 -13 518 332 70 29 chr1 148790773 148791017 -93873336 + MIR SINE MIR 8 261 -1 359 303 90 0 chr1 148791452 148791574 -93872779 + L2 LINE L2 3180 3312 -1 1849 162 0 17 chr1 148791576 148791878 -93872475 + AluJb SINE Alu 1 297 -15 238 264 42 0 chr1 148792265 148792337 -93872016 + MIR3 SINE MIR 95 169 -39 543 312 98 12 chr1 148793797 148793970 -93870383 - MER91A DNA MER1_type -2 194 7 297 304 13 0 chr1 148794363 148794442 -93869911 + GA-rich Low_complexity Low_complexity 5 84 0 568 319 13 6 chr1 148795658 148795815 -93868538 - MER91A DNA MER1_type -12 184 27 199 284 40 27 chr1 148796899 148796973 -93867380 + L2 LINE L2 2978 3052 -220 2247 98 7 7 chr1 148797134 148797430 -93866923 + AluSx SINE Alu 1 296 -16 2119 123 0 7 chr1 148797494 148797795 -93866558 + AluSx SINE Alu 5 303 -9 2247 94 17 7 chr1 148798976 148799275 -93865078 + AluSg SINE Alu 1 302 -8 854 253 77 4 chr1 148799302 148799535 -93864818 + MIR SINE MIR 3 252 -10 284 0 0 27 chr1 148799789 148799826 -93864527 + (TAA)n Simple_repeat Simple_repeat 2 37 0 236 298 0 0 chr1 148800134 148800191 -93864162 + L2 LINE L2 3253 3309 -4 22 0 0 0 chr1 148800235 148800257 -93864096 + AT_rich Low_complexity Low_complexity 1 22 0 303 309 43 43 chr1 148800922 148801061 -93863292 + L2 LINE L2 2277 2415 -899 563 228 66 112 chr1 148801076 148801335 -93863018 - MIR SINE MIR -3 259 13 270 307 59 20 chr1 148802694 148802795 -93861558 + L2 LINE L2 3164 3268 -4 333 308 19 120 chr1 148803377 148803685 -93860668 + L2 LINE L2 2950 3226 -46 308 274 82 41 chr1 148803738 148803884 -93860469 - HsTC2 DNA Tc2 -1372 526 375 3000 178 35 22 chr1 148803902 148804453 -93859900 + MER68 LTR ERV1 5 562 0 374 314 107 13 chr1 148804467 148804626 -93859727 + L2 LINE L2 2539 2712 -602 2022 113 36 39 chr1 148804740 148805049 -93859304 + AluSx SINE Alu 3 310 -2 189 107 0 0 chr1 148805057 148805085 -93859268 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 495 300 39 50 chr1 148805166 148805343 -93859010 + L1M4 LINE L1 3524 3701 -2445 1867 194 21 6 chr1 148805343 148805679 -93858674 + MER58B DNA MER1_type 1 341 0 495 300 39 50 chr1 148805679 148805961 -93858392 + L1M4 LINE L1 3701 3978 -2168 346 318 84 7 chr1 148805963 148806117 -93858236 - LTR33A LTR ERVL 0 523 358 301 273 39 84 chr1 148806414 148806568 -93857785 - LTR33A LTR ERVL -376 147 1 324 256 37 0 chr1 148806773 148806855 -93857498 - L1MC4 LINE L1 -1186 6856 6772 349 259 57 111 chr1 148806948 148807210 -93857143 + L1MB4 LINE L1 2 249 -6293 7239 200 55 48 chr1 148807370 148807829 -93856524 + L1MB4 LINE L1 3599 4053 -2625 1786 211 24 22 chr1 148807829 148808198 -93856155 - MLT1A2 LTR MaLR -4 370 1 7239 200 55 48 chr1 148808198 148809717 -93854636 + L1MB4 LINE L1 4053 5560 -1118 2204 105 3 0 chr1 148809717 148810002 -93854351 + AluSp SINE Alu 13 298 -15 7239 200 55 48 chr1 148810002 148810106 -93854247 + L1MB4 LINE L1 5560 5662 -1016 6151 64 4 305 chr1 148810106 148811973 -93852380 - SVA Other Other -2 1384 80 7239 200 55 48 chr1 148811973 148811991 -93852362 + L1MB4 LINE L1 5662 5678 -1000 402 21 0 0 chr1 148811991 148812038 -93852315 + (GA)n Simple_repeat Simple_repeat 2 48 0 7239 200 55 48 chr1 148812038 148812986 -93851367 + L1MB4 LINE L1 5678 6676 -2 25303 100 17 20 chr1 148813075 148817095 -93847258 + L1PA7 LINE L1 8 4098 -2371 2342 100 0 3 chr1 148817095 148817396 -93846957 + AluY SINE Alu 1 300 -11 25303 100 17 20 chr1 148817396 148819758 -93844595 + L1PA7 LINE L1 4098 6465 -4 554 256 49 4 chr1 148819775 148820021 -93844332 - L1M4 LINE L1 -1712 4434 4178 229 355 21 0 chr1 148820600 148820693 -93843660 + MIR SINE MIR 41 135 -73 487 315 67 6 chr1 148821060 148821238 -93843115 - MIR SINE MIR -10 252 64 642 248 89 45 chr1 148821370 148821616 -93842737 - L2 LINE L2 -12 3301 3045 183 293 131 30 chr1 148821626 148821824 -93842529 - L2 LINE L2 -914 2400 2183 344 275 71 31 chr1 148822022 148822150 -93842203 - MIR SINE MIR -35 173 54 311 254 28 0 chr1 148822215 148822286 -93842067 - MIR SINE MIR -187 75 3 477 296 28 30 chr1 148822389 148822607 -93841746 - L2 LINE L2 -195 3077 2861 452 215 274 15 chr1 148822882 148823017 -93841336 - MER5A DNA MER1_type -6 183 14 4593 139 57 14 chr1 148823470 148824480 -93839873 - L1MB5 LINE L1 0 6672 5619 5433 79 14 24 chr1 148824480 148825305 -93839048 - L1PA10 LINE L1 0 6168 5352 23473 164 26 18 chr1 148825395 148831707 -93832646 - L1PA10 LINE L1 0 6483 10 10177 226 50 14 chr1 148831719 148833760 -93830593 - L1MB5 LINE L1 -1014 5630 3663 7327 65 6 0 chr1 148833760 148835493 -93828860 - L1PA6 LINE L1 -2 6152 4414 10177 226 50 14 chr1 148835493 148837723 -93826630 - L1MB5 LINE L1 -2981 3663 1514 1822 155 3 7 chr1 148837723 148838013 -93826340 + AluJb SINE Alu 1 289 -23 10177 226 50 14 chr1 148838013 148838372 -93825981 - L1MB5 LINE L1 -5130 1514 1169 201 74 0 0 chr1 148838372 148838399 -93825954 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 10177 226 50 14 chr1 148838399 148839020 -93825333 - L1MB5 LINE L1 -5475 1169 185 1298 214 32 29 chr1 148839037 148839383 -93824970 - L1MA9 LINE L1 -37 6275 5929 1332 130 94 18 chr1 148839383 148839606 -93824747 - AluSg/x SINE Alu 0 312 73 387 237 0 107 chr1 148839625 148839802 -93824551 - L1MB5 LINE L1 -6383 159 2 478 130 0 0 chr1 148839978 148840055 -93824298 - MADE1 DNA Mariner 0 80 4 196 269 58 0 chr1 148840679 148840731 -93823622 + L2 LINE L2 2430 2484 -830 312 344 61 8 chr1 148841629 148841760 -93822593 - L2 LINE L2 -244 3028 2891 195 129 0 0 chr1 148842322 148842353 -93822000 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 269 189 54 27 chr1 148842381 148842455 -93821898 - L1M4 LINE L1 -5758 784 709 1310 250 116 44 chr1 148842661 148843178 -93821175 - L2 LINE L2 -1 3312 2765 1065 212 57 29 chr1 148843190 148843506 -93820847 - L1ME3A LINE L1 -1 6169 5845 194 156 44 0 chr1 148843525 148843570 -93820783 - L2 LINE L2 -1616 1698 1652 4080 160 16 11 chr1 148843725 148844725 -93819628 + L1P4 LINE L1 4501 5502 -664 2582 92 5 27 chr1 148844734 148845104 -93819249 + THE1B LTR MaLR 1 362 -2 228 0 0 0 chr1 148845108 148845138 -93819215 - L1P4 LINE L1 -679 5489 5460 3819 117 67 30 chr1 148845245 148845919 -93818434 + L1PA16 LINE L1 5459 6157 -9 223 246 0 72 chr1 148845974 148846043 -93818310 - L2 LINE L2 0 3272 3209 712 263 16 41 chr1 148846350 148846544 -93817809 + MIR SINE MIR 23 211 -51 228 200 55 18 chr1 148847521 148847576 -93816777 - MIR SINE MIR -122 86 30 343 236 158 24 chr1 148847665 148847792 -93816561 - MIR SINE MIR -52 210 67 194 258 125 58 chr1 148848049 148848169 -93816184 + L3 LINE CR1 1335 1462 -115 1288 226 50 45 chr1 148848508 148848973 -93815380 - MLT1C LTR MaLR 0 467 1 248 242 33 66 chr1 148849335 148849389 -93814964 + MER117 DNA MER1_type 4 55 -142 1842 133 72 36 chr1 148849389 148849751 -93814602 + THE1C LTR MaLR 1 375 0 248 242 33 66 chr1 148849751 148849787 -93814566 + MER117 DNA MER1_type 55 91 -106 2358 255 51 31 chr1 148849799 148850798 -93813555 - L2 LINE L2 0 3313 2301 467 287 108 6 chr1 148850895 148851062 -93813291 - MIR SINE MIR -30 232 49 182 340 214 0 chr1 148851738 148851841 -93812512 - MIR3 SINE MIR -81 127 3 201 344 50 44 chr1 148853449 148853609 -93810744 - MIR3 SINE MIR -38 170 10 373 297 31 31 chr1 148853732 148853860 -93810493 + MIR SINE MIR 17 144 -64 2010 154 0 3 chr1 148855313 148855624 -93808729 - AluJb SINE Alu 0 312 3 217 412 46 13 chr1 148857106 148857165 -93807188 + MIR SINE MIR 1 57 -205 1354 136 12 41 chr1 148857165 148857408 -93806945 - MER46A DNA MER2_type 0 236 1 217 412 46 13 chr1 148857408 148857501 -93806852 + MIR SINE MIR 57 158 -104 799 320 134 13 chr1 148857507 148858082 -93806271 + L2 LINE L2 2429 3124 -189 2163 127 3 7 chr1 148858082 148858389 -93805964 + AluSx SINE Alu 1 306 -6 799 320 134 13 chr1 148858389 148858606 -93805747 + L2 LINE L2 3124 3313 0 303 292 21 10 chr1 148858611 148858707 -93805646 + MIR SINE MIR 166 262 0 25 31 0 0 chr1 148858733 148858765 -93805588 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr1 148859159 148859194 -93805159 + (A)n Simple_repeat Simple_repeat 1 35 0 360 0 0 0 chr1 148859195 148859235 -93805118 + (TA)n Simple_repeat Simple_repeat 1 40 0 878 287 58 47 chr1 148859612 148859973 -93804380 + L2 LINE L2 1985 2353 -961 2224 103 7 0 chr1 148859973 148860264 -93804089 + AluSx SINE Alu 1 293 -19 878 287 58 47 chr1 148860264 148860331 -93804022 + L2 LINE L2 2353 2418 -896 202 352 0 19 chr1 148860791 148860896 -93803457 + L2 LINE L2 2834 2936 -336 434 319 12 6 chr1 148860900 148861066 -93803287 + MER102a DNA MER1_type 163 329 -1 41665 42 2 0 chr1 148861994 148868006 -93796347 + L1PA3 LINE L1 2 6023 -132 405 276 54 27 chr1 148868319 148868716 -93795637 - L1MCa LINE L1 -3729 2486 2080 7394 34 14 0 chr1 148868730 148870322 -93794031 - L1PA4 LINE L1 -5 6150 4548 369 317 51 64 chr1 148870322 148870550 -93793803 - L1MCa LINE L1 -4417 1979 1756 2283 110 0 3 chr1 148870550 148870860 -93793493 - AluY SINE Alu 0 311 3 369 317 51 64 chr1 148870860 148871006 -93793347 - L1MCa LINE L1 -4640 1756 1610 946 189 50 0 chr1 148871538 148871697 -93792656 - AluJo SINE Alu -15 297 131 731 124 0 0 chr1 148871736 148871841 -93792512 + AluSg/x SINE Alu 190 294 -18 285 107 0 54 chr1 148871841 148871897 -93792456 - AluJo SINE Alu -169 133 81 182 221 26 65 chr1 148872478 148872555 -93791798 + MER5C DNA MER1_type 209 282 -42 364 258 27 124 chr1 148873166 148873391 -93790962 - MIR SINE MIR -6 256 54 5425 99 12 41 chr1 148873665 148874672 -93789681 + L1P LINE L1 3440 4417 -1729 5745 128 30 7 chr1 148874793 148875843 -93788510 + L1P LINE L1 2035 3108 -3038 5845 36 2 1 chr1 148875996 148877059 -93787294 + L1PA2 LINE L1 4950 6014 -141 340 269 123 48 chr1 148878287 148878514 -93785839 - L1ME4a LINE L1 0 6121 5878 375 111 67 78 chr1 148879869 148879959 -93784394 + L1MB2 LINE L1 6076 6164 -7 1345 249 44 71 chr1 148880948 148881453 -93782900 + L1M2b LINE L1 3 493 -6716 3629 188 55 22 chr1 148884377 148885288 -93779065 - L1 LINE L1 -1716 4430 3490 361 333 8 8 chr1 148885349 148885478 -93778875 + CT-rich Low_complexity Low_complexity 1 129 0 311 235 37 88 chr1 148886128 148886264 -93778089 - MER5A DNA MER1_type 0 189 61 229 311 53 45 chr1 148886169 148886301 -93778052 + MER5A DNA MER1_type 44 176 -13 * 2302 103 23 0 chr1 148887169 148887470 -93776883 + AluSc SINE Alu 1 308 -1 2209 126 11 16 chr1 148887488 148887861 -93776492 - L1PB3 LINE L1 -203 5951 5581 272 276 9 9 chr1 148887859 148887975 -93776378 + L1 LINE L1 4265 4380 -1766 * 531 237 38 117 chr1 148889164 148889430 -93774923 - MIR SINE MIR -6 256 12 273 182 0 0 chr1 148889728 148889783 -93774570 + (TA)n Simple_repeat Simple_repeat 2 56 0 2156 108 14 3 chr1 148889783 148890078 -93774275 - AluSq SINE Alu -15 298 1 545 262 79 30 chr1 148890190 148890354 -93773999 - MER5B DNA MER1_type -6 172 1 250 239 29 86 chr1 148890459 148890702 -93773651 - Tigger2 DNA MER2_type -20 2698 2470 569 310 117 57 chr1 148891199 148891675 -93772678 + L1MEd LINE L1 915 1515 -975 4394 124 53 22 chr1 148891749 148892528 -93771825 - HSMAR2 DNA Mariner -6 1296 494 10965 89 22 2 chr1 148892529 148894393 -93769960 + L1PA7 LINE L1 3826 5719 -435 189 0 0 0 chr1 148894393 148894414 -93769939 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 10965 89 22 2 chr1 148894414 148894855 -93769498 + L1PA7 LINE L1 5719 6150 -4 554 256 49 4 chr1 148894872 148895118 -93769235 - L1M4 LINE L1 -1712 4434 4178 240 337 41 0 chr1 148895697 148895795 -93768558 + MIR SINE MIR 41 142 -66 487 315 67 6 chr1 148896157 148896335 -93768018 - MIR SINE MIR -10 252 64 642 248 89 45 chr1 148896467 148896713 -93767640 - L2 LINE L2 -12 3301 3045 183 293 131 30 chr1 148896723 148896921 -93767432 - L2 LINE L2 -914 2400 2183 344 275 71 31 chr1 148897119 148897247 -93767106 - MIR SINE MIR -35 173 54 311 254 28 0 chr1 148897312 148897383 -93766970 - MIR SINE MIR -187 75 3 477 296 28 30 chr1 148897486 148897704 -93766649 - L2 LINE L2 -195 3077 2861 452 215 274 15 chr1 148897979 148898114 -93766239 - MER5A DNA MER1_type -6 183 14 4593 139 57 14 chr1 148898567 148899577 -93764776 - L1MB5 LINE L1 0 6672 5619 5463 79 15 23 chr1 148899577 148900401 -93763952 - L1PA10 LINE L1 0 6168 5352 23586 163 26 18 chr1 148900491 148906804 -93757549 - L1PA10 LINE L1 0 6483 10 10158 240 35 21 chr1 148906816 148908857 -93755496 - L1MB5 LINE L1 -1014 5630 3618 7327 65 6 0 chr1 148908857 148910590 -93753763 - L1PA6 LINE L1 -2 6152 4414 10158 240 35 21 chr1 148910590 148912819 -93751534 - L1MB5 LINE L1 -3026 3618 1420 1822 155 3 7 chr1 148912819 148913109 -93751244 + AluJb SINE Alu 1 289 -23 10158 240 35 21 chr1 148913109 148913468 -93750885 - L1MB5 LINE L1 -5224 1420 1067 201 74 0 0 chr1 148913468 148913495 -93750858 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 10158 240 35 21 chr1 148913495 148914110 -93750243 - L1MB5 LINE L1 -5577 1067 185 1298 214 32 29 chr1 148914127 148914473 -93749880 - L1MA9 LINE L1 -37 6275 5929 1332 130 94 18 chr1 148914473 148914696 -93749657 - AluSg/x SINE Alu 0 310 71 387 237 0 107 chr1 148914715 148914892 -93749461 - L1MB5 LINE L1 -6383 159 2 471 306 135 39 chr1 148915226 148915694 -93748659 - L2 LINE L2 -926 2388 1876 5263 244 139 13 chr1 148915695 148916263 -93748090 + L2 LINE L2 528 1023 -2290 378 0 0 0 chr1 148916263 148916305 -93748048 + (TAA)n Simple_repeat Simple_repeat 1 42 0 5263 244 139 13 chr1 148916305 148918011 -93746342 + L2 LINE L2 1023 3020 -293 344 323 126 55 chr1 148918021 148918658 -93745695 - L2 LINE L2 -1055 2259 1578 186 303 92 0 chr1 148918670 148918746 -93745607 - L2 LINE L2 -8 3305 3223 396 202 21 0 chr1 148919292 148919389 -93744964 + MLT1J LTR MaLR 99 261 -331 * 746 279 29 25 chr1 148919384 148919660 -93744693 + MLT1J LTR MaLR 231 507 -4 691 287 26 48 chr1 148919680 148919952 -93744401 - MLT1K LTR MaLR -1 587 322 201 272 19 58 chr1 148920282 148920385 -93743968 - L2 LINE L2 -2418 896 798 1273 198 75 8 chr1 148920507 148920759 -93743594 - MLT1F1 LTR MaLR -2 565 297 2006 222 54 16 chr1 148920759 148921066 -93743287 - LTR32 LTR ERVL 0 471 140 573 88 0 12 chr1 148921066 148921146 -93743207 - MADE1 DNA Mariner -1 79 1 2006 222 54 16 chr1 148921146 148921280 -93743073 - LTR32 LTR ERVL -331 140 13 923 261 91 11 chr1 148921278 148921542 -93742811 - MLT1F1 LTR MaLR -253 289 5 * 809 306 83 56 chr1 148921589 148922070 -93742283 + L1MEd LINE L1 236 729 -5390 25 0 0 0 chr1 148922159 148922184 -93742169 + AT_rich Low_complexity Low_complexity 1 25 0 2137 139 24 3 chr1 148922290 148922629 -93741724 + L1MB2 LINE L1 5823 6168 -3 1065 163 14 127 chr1 148922670 148922946 -93741407 + L1MDa LINE L1 34 278 -6262 257 285 221 0 chr1 148922958 148923116 -93741237 - L2 LINE L2 -1082 2232 2040 5662 141 21 64 chr1 148923153 148923349 -93741004 + L1MA5A LINE L1 4126 4329 -1968 1805 173 3 7 chr1 148923349 148923650 -93740703 + AluJb SINE Alu 2 301 -11 5662 141 21 64 chr1 148923650 148924612 -93739741 + L1MA5A LINE L1 4329 5331 -966 1714 143 120 0 chr1 148924612 148924878 -93739475 - AluSc SINE Alu 0 299 2 5662 141 21 64 chr1 148924878 148925116 -93739237 + L1MA5A LINE L1 5331 5578 -719 1879 169 10 7 chr1 148925116 148925423 -93738930 + AluJo SINE Alu 3 310 -2 5662 141 21 64 chr1 148925423 148926106 -93738247 + L1MA5A LINE L1 5578 6275 -22 560 268 28 0 chr1 148926199 148926341 -93738012 - MIR SINE MIR -70 192 47 2124 112 0 3 chr1 148927941 148928253 -93736100 + AluSx SINE Alu 1 311 0 966 197 191 44 chr1 148928409 148928774 -93735579 - MER63 DNA MER1_type -31 1030 7 314 303 0 10 chr1 148929506 148929605 -93734748 + CT-rich Low_complexity Low_complexity 2 99 0 195 224 0 69 chr1 148930091 148930149 -93734204 + MIR SINE MIR 182 235 -27 540 218 181 32 chr1 148930415 148930603 -93733750 + MIR SINE MIR 1 216 -46 323 264 82 86 chr1 148931803 148932023 -93732330 + MLT1K LTR MaLR 211 429 -159 342 217 19 47 chr1 148932137 148932243 -93732110 + MLT1K LTR MaLR 486 588 0 2122 109 3 10 chr1 148932994 148933298 -93731055 - AluSx SINE Alu 0 312 11 1271 295 38 20 chr1 148933389 148933560 -93730793 - LTR16B LTR ERVL -50 414 247 1690 142 0 112 chr1 148933560 148933891 -93730462 + AluJb SINE Alu 1 294 -8 1271 295 38 20 chr1 148933891 148934119 -93730234 - LTR16B LTR ERVL -217 247 8 1092 288 25 19 chr1 148934150 148934396 -93729957 + L1MEc LINE L1 1278 1521 -4875 2194 118 0 0 chr1 148934396 148934700 -93729653 + AluSq SINE Alu 1 304 -9 1092 288 25 19 chr1 148934700 148934759 -93729594 + L1MEc LINE L1 1521 1578 -4818 198 0 0 0 chr1 148934759 148934781 -93729572 + (CA)n Simple_repeat Simple_repeat 2 23 0 1092 288 25 19 chr1 148934781 148934947 -93729406 + L1MEc LINE L1 1578 1753 -4643 352 267 140 12 chr1 148935396 148935572 -93728781 + MIR3 SINE MIR 9 202 -6 995 190 151 31 chr1 148935717 148936006 -93728347 + L1ME1 LINE L1 5888 6331 -3 668 237 24 0 chr1 148936224 148936393 -93727960 - L1MB7 LINE L1 0 6184 6012 375 333 54 5 chr1 148936447 148936651 -93727702 - L3 LINE CR1 -1 1576 1363 2306 93 0 0 chr1 148937071 148937360 -93726993 + AluSx SINE Alu 1 289 -23 2480 83 0 0 chr1 148937501 148937813 -93726540 + AluSx SINE Alu 1 312 0 292 264 14 0 chr1 148937993 148938065 -93726288 + MIR SINE MIR 75 146 -62 307 238 20 40 chr1 148938302 148938403 -93725950 - MIR SINE MIR -56 206 108 932 252 120 18 chr1 148939212 148939605 -93724748 + L1ME3A LINE L1 4850 5282 -864 297 0 0 0 chr1 148939609 148939642 -93724711 + (CA)n Simple_repeat Simple_repeat 2 34 0 861 282 117 35 chr1 148939663 148940124 -93724229 + L1ME3A LINE L1 5333 5831 -339 2245 110 23 0 chr1 148940124 148940425 -93723928 + AluSc SINE Alu 1 308 -1 2394 126 11 16 chr1 148940443 148940816 -93723537 - L1PB3 LINE L1 -203 5951 5581 775 216 129 8 chr1 148940814 148941055 -93723298 + L1PB3 LINE L1 4265 4534 -1612 * 1382 124 0 5 chr1 148941062 148941255 -93723098 + L1PB3 LINE L1 5961 6152 -2 400 274 19 13 chr1 148941271 148941428 -93722925 + L1ME3A LINE L1 5825 5982 -188 2278 111 3 0 chr1 148941634 148941932 -93722421 + AluSx SINE Alu 1 299 -13 270 176 0 0 chr1 148941932 148941983 -93722370 + (TA)n Simple_repeat Simple_repeat 1 51 0 239 247 26 52 chr1 148942023 148942100 -93722253 - MER116 DNA Mariner -5 75 1 509 237 38 117 chr1 148942281 148942547 -93721806 + MIR SINE MIR 12 256 -6 309 107 0 54 chr1 148943725 148943781 -93720572 + FLAM_A SINE Alu 80 132 -1 780 142 0 8 chr1 148943781 148943901 -93720452 - AluSg/x SINE Alu -17 295 177 928 189 50 0 chr1 148943926 148944085 -93720268 + FRAM SINE Alu 1 161 -15 24 53 0 0 chr1 148944301 148944339 -93720014 + AT_rich Low_complexity Low_complexity 1 38 0 2027 147 96 0 chr1 148945216 148945550 -93718803 + MER47A DNA MER2_type 1 366 0 375 193 0 57 chr1 148945695 148945783 -93718570 + MER99 DNA DNA 266 348 -480 5675 149 29 18 chr1 148945845 148946502 -93717851 + L1PB3 LINE L1 4779 5427 -727 2447 100 0 0 chr1 148946502 148946813 -93717540 - AluSx SINE Alu -1 311 1 5675 149 29 18 chr1 148946813 148947504 -93716849 + L1PB3 LINE L1 5427 6154 0 1915 125 53 0 chr1 148948842 148949123 -93715230 - AluJb SINE Alu -16 296 1 741 142 15 29 chr1 148949679 148949944 -93714409 + AluJo SINE Alu 1 312 0 204 97 0 0 chr1 148949956 148949987 -93714366 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 1888 310 62 14 chr1 148950749 148951474 -93712879 + HERVL LTR ERVL 3237 3996 -1658 1384 247 14 0 chr1 148951476 148951755 -93712598 + LTR40a LTR ERVL 234 516 -3 308 237 51 42 chr1 148951759 148951877 -93712476 + HERVL40 LTR ERVL 1 119 -5411 620 262 121 0 chr1 148952044 148952250 -93712103 + HERVL40 LTR ERVL 924 1154 -4376 237 220 0 0 chr1 148952269 148952319 -93712034 - LTR40a LTR ERVL -306 213 164 688 259 71 36 chr1 148952324 148952448 -93711905 - L2 LINE L2 -970 2344 2207 816 264 88 8 chr1 148952448 148952687 -93711666 - MIR SINE MIR -4 258 1 688 259 71 36 chr1 148952687 148952786 -93711567 - L2 LINE L2 -1107 2207 2113 1568 165 0 36 chr1 148953557 148953860 -93710493 - L1MA4 LINE L1 0 6300 6009 180 77 0 0 chr1 148956696 148956722 -93707631 + (A)n Simple_repeat Simple_repeat 1 26 0 727 216 78 12 chr1 148957029 148957196 -93707157 + MER5B DNA MER1_type 1 178 0 2463 75 3 0 chr1 148957477 148957783 -93706570 + AluSp SINE Alu 1 307 -6 363 303 108 56 chr1 148957797 148958121 -93706232 + L2 LINE L2 2033 2373 -941 356 324 69 78 chr1 148958170 148958604 -93705749 + L2 LINE L2 2652 3079 -193 515 227 45 30 chr1 148958746 148958878 -93705475 - MIR3 SINE MIR -66 142 9 241 359 68 43 chr1 148959027 148959191 -93705162 - L2 LINE L2 -621 2693 2535 2232 98 17 0 chr1 148959191 148959488 -93704865 + AluSq SINE Alu 2 303 -10 241 359 68 43 chr1 148959488 148959719 -93704634 - L2 LINE L2 -779 2535 2288 1411 193 29 16 chr1 148960017 148960323 -93704030 - AluJb SINE Alu -2 310 1 1408 204 41 40 chr1 148960363 148960488 -93703865 + L1MC/D LINE L1 2153 2276 -3939 2140 119 0 0 chr1 148960488 148960773 -93703580 + AluSx SINE Alu 1 285 -27 252 0 0 0 chr1 148960773 148960801 -93703552 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1408 204 41 40 chr1 148960801 148961118 -93703235 + L1MC/D LINE L1 2275 2557 -3658 1085 124 0 7 chr1 148961118 148961263 -93703090 + U4 snRNA snRNA 1 144 -1 839 126 82 63 chr1 148961279 148961301 -93703052 + AluJb SINE Alu 120 140 -172 1910 160 0 22 chr1 148961301 148961620 -93702733 + AluSx SINE Alu 1 312 0 839 126 82 63 chr1 148961620 148961756 -93702597 + AluJb SINE Alu 140 281 -31 180 0 0 0 chr1 148961759 148961779 -93702574 + (TC)n Simple_repeat Simple_repeat 1 20 0 423 119 0 0 chr1 148961779 148961846 -93702507 + (TG)n Simple_repeat Simple_repeat 2 68 0 1354 203 86 14 chr1 148961856 148962205 -93702148 + L1MC/D LINE L1 2550 2923 -3292 1165 152 19 5 chr1 148962205 148962415 -93701938 + L1MA4A LINE L1 5974 6186 -117 1569 186 27 83 chr1 148962428 148962836 -93701517 - MLT1C LTR MaLR -82 385 1 536 236 34 0 chr1 148962836 148962984 -93701369 + L1MC/D LINE L1 4409 4561 -1654 26973 79 22 7 chr1 148962997 148964911 -93699442 + L1PA6 LINE L1 11 1894 -4260 2493 71 0 0 chr1 148964911 148965207 -93699146 + AluY SINE Alu 1 296 -15 26973 79 22 7 chr1 148965207 148969320 -93695033 + L1PA6 LINE L1 1894 6125 -29 2611 211 55 53 chr1 148969456 148969586 -93694767 + L1MC/D LINE L1 4515 4643 -1572 2385 77 0 7 chr1 148969586 148969884 -93694469 + AluY SINE Alu 1 296 -15 2611 211 55 53 chr1 148969884 148970330 -93694023 + L1MC/D LINE L1 4643 5095 -1120 2656 46 0 3 chr1 148970330 148970634 -93693719 + AluY SINE Alu 1 303 -8 2611 211 55 53 chr1 148970634 148970919 -93693434 + L1MC/D LINE L1 5095 5378 -837 334 275 54 37 chr1 148970957 148971245 -93693108 + L1P LINE L1 4880 5169 -977 2284 114 0 0 chr1 148971420 148971719 -93692634 + AluSx SINE Alu 1 299 -13 446 309 64 29 chr1 148971727 148971931 -93692422 + L1MC/D LINE L1 5566 5776 -2101 2078 163 0 0 chr1 148972274 148972581 -93691772 + AluSx SINE Alu 1 307 -5 252 0 0 0 chr1 148972655 148972683 -93691670 + (A)n Simple_repeat Simple_repeat 1 28 0 823 161 0 0 chr1 148972699 148972823 -93691530 + FRAM SINE Alu 33 156 -20 36 53 0 0 chr1 148972864 148972921 -93691432 + AT_rich Low_complexity Low_complexity 1 57 0 520 296 111 43 chr1 148973069 148973278 -93691075 + L1MC4a LINE L1 5452 5696 -2112 2397 90 0 3 chr1 148973278 148973579 -93690774 + AluSx SINE Alu 1 300 -12 520 296 111 43 chr1 148973579 148973720 -93690633 + L1MC4a LINE L1 5696 5826 -1982 2242 115 0 0 chr1 148973723 148974040 -93690313 + AluSx SINE Alu 1 317 0 188 222 44 0 chr1 148974040 148974085 -93690268 - MIR SINE MIR -78 130 84 415 386 111 15 chr1 148974287 148974821 -93689532 - L2 LINE L2 -428 2886 2302 396 335 89 12 chr1 148974947 148975204 -93689149 + L2 LINE L2 2368 2644 -670 2130 116 7 7 chr1 148975250 148975553 -93688800 + AluSx SINE Alu 1 303 -9 1240 140 6 0 chr1 148975553 148975731 -93688622 + AluSg/x SINE Alu 134 312 0 695 258 224 21 chr1 148976026 148976356 -93687997 - LTR16A LTR ERVL -2 448 52 200 343 14 14 chr1 148976559 148976632 -93687721 + L2 LINE L2 3241 3313 0 288 328 25 8 chr1 148977797 148977916 -93686437 - MER91A DNA MER1_type -75 121 1 335 323 69 26 chr1 148977957 148978146 -93686207 - MIR SINE MIR -45 217 21 291 54 0 0 chr1 148978562 148978599 -93685754 + (TG)n Simple_repeat Simple_repeat 1 37 0 288 0 0 0 chr1 148978598 148978630 -93685723 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 230 308 13 0 chr1 148979035 148979113 -93685240 + C-rich Low_complexity Low_complexity 4 82 0 445 253 100 59 chr1 148979327 148979497 -93684856 + MIR3 SINE MIR 12 188 -20 185 236 111 0 chr1 148979603 148979675 -93684678 - L3b LINE CR1 -186 1397 1318 1985 160 3 0 chr1 148979694 148980000 -93684353 + AluSx SINE Alu 1 307 -5 1070 324 91 9 chr1 148980059 148980510 -93683843 - L3 LINE CR1 -7 1570 1083 394 287 0 0 chr1 148980578 148980672 -93683681 + MIR SINE MIR 47 140 -68 432 55 0 0 chr1 148981704 148981759 -93682594 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 4815 134 30 49 chr1 148983130 148983407 -93680946 + L1MB2 LINE L1 5045 5326 -845 791 168 13 13 chr1 148983407 148983562 -93680791 + L1PB4 LINE L1 5998 6152 -4 4815 134 30 49 chr1 148983562 148984411 -93679942 + L1MB2 LINE L1 5326 6170 -1 454 262 99 0 chr1 148986708 148986849 -93677504 + MIR SINE MIR 63 217 -45 186 43 0 0 chr1 148987491 148987514 -93676839 + (A)n Simple_repeat Simple_repeat 1 23 0 2505 75 7 0 chr1 148987617 148987912 -93676441 + AluSq SINE Alu 1 297 -16 321 167 64 39 chr1 148988994 148989072 -93675281 - LTR54 LTR ERV1 -29 481 402 236 244 217 9 chr1 148990833 148990948 -93673405 - MIR3 SINE MIR -3 205 67 579 145 57 40 chr1 148991250 148991374 -93672979 + MIR3 SINE MIR 52 177 -31 188 355 50 41 chr1 148992978 148993099 -93671254 + L2 LINE L2 3104 3225 -47 2683 61 0 6 chr1 148993120 148993433 -93670920 + AluY SINE Alu 1 311 0 2103 137 3 7 chr1 148994902 148995194 -93669159 + AluSq SINE Alu 1 291 -22 251 162 0 0 chr1 148995634 148995671 -93668682 - tRNA-Ile-ATT tRNA tRNA -39 38 2 246 242 16 0 chr1 148996128 148996190 -93668163 + GA-rich Low_complexity Low_complexity 3 65 0 1108 154 0 0 chr1 149002258 149002427 -93661926 - AluJb SINE Alu -9 303 135 588 251 91 11 chr1 149006566 149006741 -93657612 + MIR SINE MIR 53 241 -21 200 264 0 0 chr1 149006858 149006911 -93657442 - L2 LINE L2 -32 3240 3188 2098 145 21 18 chr1 149007082 149007469 -93656884 - L1MB5 LINE L1 -6 6168 5781 206 321 38 38 chr1 149008790 149008896 -93655457 - MIR SINE MIR -69 139 34 1990 112 14 10 chr1 149009399 149009693 -93654660 - AluSx SINE Alu -17 295 1 189 200 120 0 chr1 149011916 149011966 -93652387 + L3 LINE CR1 1378 1433 -144 * 287 227 114 0 chr1 149011963 149012051 -93652302 + MIR3 SINE MIR 86 183 -25 203 243 0 0 chr1 149012102 149012139 -93652214 + polypurine Low_complexity Low_complexity 33 69 0 276 100 0 0 chr1 149013322 149013362 -93650991 + (CA)n Simple_repeat Simple_repeat 2 41 0 204 40 0 0 chr1 149015099 149015124 -93649229 + (TG)n Simple_repeat Simple_repeat 1 25 0 537 285 23 47 chr1 149015226 149015440 -93648913 - MIR SINE MIR -6 256 48 1499 182 54 27 chr1 149016456 149016791 -93647562 + MER2 DNA MER2_type 1 344 0 734 148 9 9 chr1 149017175 149017290 -93647063 - MLT1C LTR MaLR 0 467 353 951 221 40 26 chr1 149018038 149018310 -93646043 + AluJo SINE Alu 13 288 -24 734 224 6 22 chr1 149019000 149019179 -93645174 + MIR SINE MIR 87 262 0 615 259 93 5 chr1 149019603 149019796 -93644557 + MIR SINE MIR 52 261 -1 1227 169 40 0 chr1 149019803 149020051 -93644302 - L1MA8 LINE L1 -3 6288 6031 4125 179 23 31 chr1 149021315 149021355 -93642998 - L1P4 LINE L1 -656 5510 5471 1895 82 0 57 chr1 149021355 149021636 -93642717 - AluSg SINE Alu -45 265 1 4125 179 23 31 chr1 149021636 149022712 -93641641 - L1P4 LINE L1 -695 5471 4402 2964 143 70 2 chr1 149022831 149023384 -93640969 - L1MA3 LINE L1 -243 6057 5483 498 274 0 0 chr1 149023621 149023727 -93640626 + L2 LINE L2 3208 3313 0 688 101 0 10 chr1 149023901 149024000 -93640353 + MER4A LTR ERV1 1 98 -566 1744 117 11 83 chr1 149024000 149024372 -93639981 + MER4A LTR ERV1 261 664 0 2253 142 35 11 chr1 149024486 149024852 -93639501 + THE1C LTR MaLR 1 375 0 1775 90 20 133 chr1 149024852 149025198 -93639155 + THE1C-int LTR MaLR 1 307 -1273 871 137 157 0 chr1 149025200 149025353 -93639000 + THE1C LTR MaLR 199 375 0 1576 185 58 29 chr1 149025813 149025967 -93638386 + MLT1A2 LTR MaLR 19 167 -207 366 42 0 0 chr1 149025967 149026015 -93638338 + (TC)n Simple_repeat Simple_repeat 2 49 0 1576 185 58 29 chr1 149026015 149026206 -93638147 + MLT1A2 LTR MaLR 167 374 0 249 187 219 106 chr1 149026206 149026329 -93638024 + MER5A DNA MER1_type 47 183 -6 1441 129 21 33 chr1 149026607 149026848 -93637505 - AluSx SINE Alu -13 299 62 1492 154 107 4 chr1 149026848 149027128 -93637225 - L1MC1 LINE L1 -4 6329 6021 2272 109 0 0 chr1 149027250 149027563 -93636790 - AluSq SINE Alu 0 313 1 205 266 202 32 chr1 149027812 149027906 -93636447 + L2 LINE L2 3199 3308 -5 202 211 0 0 chr1 149028325 149028377 -93635976 + A-rich Low_complexity Low_complexity 1 52 0 292 301 0 0 chr1 149029229 149029312 -93635041 - L2 LINE L2 -2 3311 3229 23 0 0 0 chr1 149030247 149030270 -93634083 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 149030353 149030377 -93633976 + AT_rich Low_complexity Low_complexity 1 24 0 309 51 0 0 chr1 149031309 149031348 -93633005 + (TAA)n Simple_repeat Simple_repeat 2 40 0 412 236 210 25 chr1 149033906 149034063 -93630290 - MIR3 SINE MIR -6 202 17 21 0 0 0 chr1 149035122 149035143 -93629210 + AT_rich Low_complexity Low_complexity 1 21 0 360 278 54 43 chr1 149035787 149036213 -93628140 + L1ME3 LINE L1 5083 5517 -647 288 221 52 0 chr1 149036212 149036322 -93628031 + L1ME3 LINE L1 5789 5905 -257 * 2217 110 0 0 chr1 149036343 149036644 -93627709 + AluSx SINE Alu 1 301 -11 409 169 127 68 chr1 149037845 149037963 -93626390 + MLT1E3 LTR MaLR 85 209 -417 837 175 137 9 chr1 149038032 149038243 -93626110 + MLT1E1 LTR MaLR 417 654 0 260 260 0 48 chr1 149040580 149040684 -93623669 + GA-rich Low_complexity Low_complexity 4 102 0 191 237 17 68 chr1 149040987 149041046 -93623307 - MER5B DNA MER1_type -5 173 118 302 163 0 0 chr1 149041092 149041141 -93623212 - MER5B DNA MER1_type -129 49 1 457 255 10 10 chr1 149041166 149041268 -93623085 + MER5A DNA MER1_type 4 105 -84 2340 68 0 29 chr1 149041329 149041640 -93622713 + AluSp SINE Alu 2 303 -10 747 279 187 59 chr1 149044730 149045546 -93618807 - L2 LINE L2 -1 3271 2318 341 242 93 37 chr1 149045884 149046045 -93618308 - L2 LINE L2 -1212 2102 1933 1946 74 62 0 chr1 149046063 149046320 -93618033 + AluSg1 SINE Alu 21 293 -16 1530 114 14 0 chr1 149046476 149046695 -93617658 - Tigger3(Golem) DNA MER2_type -2 3027 2806 225 211 0 0 chr1 149048034 149048072 -93616281 + MER5B DNA MER1_type 1 38 -140 367 118 0 0 chr1 149048082 149048133 -93616220 - Alu SINE Alu -251 51 1 1991 113 0 14 chr1 149048200 149048482 -93615871 + AluSx SINE Alu 1 278 -34 264 324 29 67 chr1 149048526 149048631 -93615722 + MIR SINE MIR 20 120 -142 192 179 0 0 chr1 149048678 149048717 -93615636 + GA-rich Low_complexity Low_complexity 2 40 0 2131 110 0 3 chr1 149049209 149049508 -93614845 + AluSg SINE Alu 1 298 -12 216 286 71 0 chr1 149049633 149049703 -93614650 + MIR SINE MIR 75 149 -113 1608 155 6 31 chr1 149050147 149050464 -93613889 - AluSx SINE Alu -2 310 2 347 163 48 0 chr1 149050569 149050652 -93613701 - AluS SINE Alu -237 66 1 605 282 75 36 chr1 149050761 149050794 -93613559 + MIR SINE MIR 1 31 -231 2173 106 0 0 chr1 149050794 149051087 -93613266 + AluSq SINE Alu 1 293 -20 605 282 75 36 chr1 149051087 149051305 -93613048 + MIR SINE MIR 31 262 0 198 0 0 0 chr1 149052310 149052332 -93612021 + (A)n Simple_repeat Simple_repeat 1 22 0 532 151 0 3 chr1 149053704 149053846 -93610507 - MER53 DNA DNA 0 189 1 555 297 114 13 chr1 149053989 149054225 -93610128 + MIR SINE MIR 2 261 -1 280 291 155 30 chr1 149054459 149055106 -93609247 + L1ME4a LINE L1 5292 6017 -104 2714 255 47 23 chr1 149055106 149055878 -93608475 + L1MEc LINE L1 36 825 -5571 434 304 85 30 chr1 149056509 149056710 -93607643 - L2 LINE L2 -4 3309 3098 266 314 82 70 chr1 149056789 149057276 -93607077 - L2 LINE L2 -457 2857 2365 1927 158 13 0 chr1 149107297 149107724 -93556629 - AluSx SINE Alu 0 433 3 321 98 82 33 chr1 149107726 149107787 -93556566 - L1MB8 LINE L1 -3 6175 6112 1893 162 0 13 chr1 149107787 149108096 -93556257 + AluJb SINE Alu 1 305 -7 4322 155 20 39 chr1 149108176 149108733 -93555620 - L1MB8 LINE L1 -54 6124 5585 2407 65 7 0 chr1 149108733 149109025 -93555328 - AluY SINE Alu -17 294 1 4322 155 20 39 chr1 149109025 149109295 -93555058 - L1MB8 LINE L1 -593 5585 5312 1982 131 32 0 chr1 149109315 149109598 -93554755 - AluSx SINE Alu -20 292 1 800 167 98 0 chr1 149109624 149109756 -93554597 - FAM SINE Alu -37 148 4 1445 163 94 18 chr1 149109762 149110039 -93554314 - AluJo SINE Alu -12 300 3 2464 89 0 0 chr1 149110050 149110353 -93554000 - AluSq SINE Alu -10 303 1 1945 200 82 15 chr1 149110358 149110833 -93553520 - L1MB8 LINE L1 -842 5304 4798 28 48 0 0 chr1 149111038 149111080 -93553273 + AT_rich Low_complexity Low_complexity 1 42 0 389 320 0 16 chr1 149111173 149111298 -93553055 + L2 LINE L2 3134 3256 -16 298 118 88 118 chr1 149111712 149111769 -93552584 + L1MC/D LINE L1 5383 5437 -805 2230 89 3 7 chr1 149111769 149112100 -93552253 + AluSx SINE Alu 1 312 0 298 118 88 118 chr1 149112100 149112144 -93552209 + L1MC/D LINE L1 5437 5481 -761 1332 137 51 27 chr1 149112151 149112407 -93551946 - L1MB8 LINE L1 -2 6176 5915 400 287 0 0 chr1 149113428 149113522 -93550831 - ERVL LTR ERVL -1480 4174 4081 1755 70 9 0 chr1 149113537 149113751 -93550602 + AluSq SINE Alu 86 301 -12 1583 295 32 13 chr1 149113818 149114866 -93549487 - ERVL LTR ERVL -1344 3893 2740 2445 95 0 0 chr1 149114891 149115187 -93549166 - AluSx SINE Alu -16 296 1 1040 228 16 0 chr1 149115187 149115376 -93548977 - MER58A DNA MER1_type -32 192 1 857 290 53 20 chr1 149115376 149115676 -93548677 - ERVL LTR ERVL -3188 2576 2267 346 253 56 45 chr1 149115683 149115856 -93548497 - ERVL LTR ERVL -2841 2203 1946 3807 211 77 26 chr1 149115909 149116272 -93548081 + MER21B LTR ERV1 1 344 -519 2285 132 0 12 chr1 149116272 149116612 -93547741 + MER1B DNA MER1_type 2 337 0 3807 211 77 26 chr1 149116612 149116672 -93547681 + MER21B LTR ERV1 344 399 -464 2160 120 0 19 chr1 149116672 149116981 -93547372 - AluSx SINE Alu -9 303 1 3807 211 77 26 chr1 149116981 149117377 -93546976 + MER21B LTR ERV1 399 863 0 260 307 27 0 chr1 149117598 149117673 -93546680 - ERVL LTR ERVL -3510 1486 1410 967 124 0 0 chr1 149117854 149117983 -93546370 - AluSq/x SINE Alu -183 129 1 628 241 51 31 chr1 149118001 149118196 -93546157 - MER105 DNA DNA -4 200 2 26 30 0 0 chr1 149119838 149119871 -93544482 + AT_rich Low_complexity Low_complexity 1 33 0 2296 110 0 0 chr1 149119939 149120238 -93544115 - AluSx SINE Alu -13 299 1 1121 100 0 120 chr1 149120241 149120441 -93543912 - AluSg/x SINE Alu -18 294 119 1233 128 12 68 chr1 149120541 149120792 -93543561 - AluSx SINE Alu -75 237 1 367 277 84 19 chr1 149120803 149120958 -93543395 - L2 LINE L2 -609 2705 2541 207 286 13 13 chr1 149121651 149121728 -93542625 + (CGG)n Simple_repeat Simple_repeat 3 79 0 22 35 0 0 chr1 149123391 149123420 -93540933 + AT_rich Low_complexity Low_complexity 1 29 0 513 272 55 20 chr1 149123832 149124034 -93540319 + MIR SINE MIR 51 259 -3 2250 106 10 0 chr1 149124578 149124881 -93539472 - AluSc SINE Alu -3 306 1 262 128 21 0 chr1 149125368 149125415 -93538938 - FLAM SINE Alu 0 133 86 766 188 94 61 chr1 149125415 149125628 -93538725 - AluJo SINE Alu -92 220 1 2018 148 17 0 chr1 149125779 149126069 -93538284 - AluJb SINE Alu -17 295 1 1257 171 16 86 chr1 149126103 149126418 -93537935 + AluJb SINE Alu 1 293 -19 806 100 0 0 chr1 149127957 149128057 -93536296 - AluJ/FLAM SINE Alu -212 100 1 1603 153 52 24 chr1 149129506 149129793 -93534560 + AluJb SINE Alu 1 295 -17 2474 66 10 7 chr1 149130785 149131089 -93533264 - AluSp SINE Alu -8 305 1 2081 218 51 175 chr1 149131113 149131619 -93532734 - L1ME1 LINE L1 -5 6187 5715 707 194 0 0 chr1 149131619 149131748 -93532605 - FLAM_C SINE Alu -1 142 14 2081 218 51 175 chr1 149131748 149132053 -93532300 - L1ME1 LINE L1 -477 5715 5374 2060 124 10 3 chr1 149132064 149132362 -93531991 - AluSx SINE Alu -12 300 1 873 198 12 25 chr1 149132362 149132524 -93531829 - FRAM SINE Alu -6 160 1 1749 108 119 4 chr1 149132550 149132818 -93531535 - AluSc SINE Alu 0 299 1 1183 195 34 58 chr1 149132949 149133056 -93531297 - L1ME1 LINE L1 -877 5269 5161 2205 100 0 3 chr1 149133056 149133345 -93531008 - AluSx SINE Alu -16 296 9 1183 195 34 58 chr1 149133345 149133565 -93530788 - L1ME1 LINE L1 -985 5161 4950 468 199 65 86 chr1 149133565 149133751 -93530602 - MER46A DNA MER2_type -51 185 4 * 1133 168 101 5 chr1 149133610 149133818 -93530535 + MER46A DNA MER2_type 1 228 -8 1300 167 100 18 chr1 149134396 149134677 -93529676 - AluJo SINE Alu -8 304 1 586 193 28 9 chr1 149134744 149134853 -93529500 - FLAM_A SINE Alu -21 121 11 2183 60 7 21 chr1 149135214 149135495 -93528858 - AluSp SINE Alu -11 302 26 2336 75 27 0 chr1 149136468 149136761 -93527592 + AluY SINE Alu 1 301 -10 984 104 0 15 chr1 149137833 149137968 -93526385 + FLAM_C SINE Alu 1 133 0 222 173 25 37 chr1 149138023 149138104 -93526249 + CT-rich Low_complexity Low_complexity 3 82 0 1211 177 27 14 chr1 149138527 149138747 -93525606 + MER58A DNA MER1_type 1 223 -1 2301 97 3 7 chr1 149139116 149139416 -93524937 - AluSq SINE Alu -14 299 1 2234 78 43 0 chr1 149140213 149140494 -93523859 - AluY SINE Alu -18 293 1 225 154 0 0 chr1 149141254 149141293 -93523060 + GA-rich Low_complexity Low_complexity 2 40 0 875 207 137 4 chr1 149141934 149142161 -93522192 + MIR SINE MIR 2 258 -4 1647 179 0 42 chr1 149143538 149143846 -93520507 + AluJo SINE Alu 2 296 -16 242 343 121 14 chr1 149143991 149144131 -93520222 + L3b LINE CR1 1426 1580 -3 28 48 0 0 chr1 149144571 149144613 -93519740 + AT_rich Low_complexity Low_complexity 1 42 0 207 262 146 10 chr1 149144765 149144868 -93519485 + MIR SINE MIR 32 148 -114 304 304 36 9 chr1 149144891 149145003 -93519350 - L1MC4 LINE L1 -1314 6728 6614 291 244 0 0 chr1 149145008 149145086 -93519267 + (TA)n Simple_repeat Simple_repeat 1 78 0 204 97 0 0 chr1 149145091 149145122 -93519231 + (TG)n Simple_repeat Simple_repeat 1 31 0 2285 121 0 0 chr1 149145338 149145636 -93518717 + AluSx SINE Alu 1 298 -14 280 297 74 29 chr1 149145753 149145928 -93518425 - L1MC4 LINE L1 -1902 5906 5724 2073 105 62 0 chr1 149145959 149146235 -93518118 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr1 149146313 149146336 -93518017 + AT_rich Low_complexity Low_complexity 1 23 0 403 164 0 0 chr1 149147120 149147187 -93517166 - AluS SINE Alu -5 297 231 830 161 0 0 chr1 149147970 149148088 -93516265 - FLAM_C SINE Alu -15 118 1 1553 161 53 56 chr1 149148516 149148698 -93515655 - AluJb SINE Alu -9 303 121 2270 112 0 0 chr1 149148698 149148994 -93515359 - AluSg SINE Alu -14 296 1 1553 161 53 56 chr1 149148994 149149115 -93515238 - AluJb SINE Alu -191 121 1 1880 135 6 61 chr1 149149135 149149446 -93514907 - AluSx SINE Alu -18 294 1 1929 165 3 10 chr1 149150418 149150721 -93513632 + AluSx SINE Alu 1 301 -11 2284 102 0 3 chr1 149151438 149151732 -93512621 - AluSq SINE Alu -20 293 1 22 0 0 0 chr1 149151732 149151754 -93512599 + AT_rich Low_complexity Low_complexity 1 22 0 2166 109 14 0 chr1 149152160 149152454 -93511899 - AluSx SINE Alu -14 298 1 1465 156 12 114 chr1 149153243 149153576 -93510777 + AluJo SINE Alu 1 299 -3 866 211 11 38 chr1 149153684 149153869 -93510484 + MER58A DNA MER1_type 45 224 0 1138 177 43 5 chr1 149153919 149154128 -93510225 + AluJb SINE Alu 5 221 -91 212 231 83 50 chr1 149154479 149154600 -93509753 + L2 LINE L2 2155 2279 -1035 416 333 33 19 chr1 149154607 149154820 -93509533 - L2 LINE L2 -1394 1920 1705 371 295 0 0 chr1 149154944 149155022 -93509331 + L2 LINE L2 3166 3243 -29 1435 141 5 0 chr1 149155416 149155622 -93508731 + AluSg/x SINE Alu 86 292 -18 576 309 39 0 chr1 149155950 149156154 -93508199 + MIR SINE MIR 7 218 -44 499 225 21 105 chr1 149157492 149157534 -93506819 - MER5B DNA MER1_type -2 176 132 1783 125 26 76 chr1 149157534 149157838 -93506515 - AluJb SINE Alu -13 299 11 499 225 21 105 chr1 149157838 149157986 -93506367 - MER5B DNA MER1_type -46 132 2 577 214 180 26 chr1 149159192 149159459 -93504894 + L1MC4 LINE L1 7636 7943 -99 207 0 0 0 chr1 149159633 149159656 -93504697 + (T)n Simple_repeat Simple_repeat 1 23 0 989 188 109 0 chr1 149163474 149163676 -93500677 + MER58A DNA MER1_type 1 224 0 22 35 0 0 chr1 149164693 149164722 -93499631 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr1 149165728 149165760 -93498593 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr1 149166306 149166327 -93498026 + (CA)n Simple_repeat Simple_repeat 2 22 0 2314 110 3 0 chr1 149167069 149167377 -93496976 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr1 149167448 149167476 -93496877 + AT_rich Low_complexity Low_complexity 1 28 0 1016 142 0 0 chr1 149168411 149168552 -93495801 - AluSq/x SINE Alu -171 141 1 2028 132 7 7 chr1 149169269 149169557 -93494796 - AluJb SINE Alu -19 293 6 854 73 0 0 chr1 149169592 149169702 -93494651 + HY1 scRNA scRNA 3 112 0 398 219 10 42 chr1 149170335 149170431 -93493922 - L2 LINE L2 0 3313 3221 383 310 35 71 chr1 149170666 149170863 -93493490 - MIR SINE MIR -68 194 5 221 310 137 30 chr1 149174735 149174932 -93489421 + L2 LINE L2 2831 3048 -224 300 27 0 0 chr1 149177588 149177625 -93486728 + (TG)n Simple_repeat Simple_repeat 2 38 0 221 313 10 10 chr1 149179767 149179863 -93484490 + CT-rich Low_complexity Low_complexity 2 97 0 201 132 0 0 chr1 149181696 149181734 -93482619 + (CCG)n Simple_repeat Simple_repeat 2 39 0 291 273 173 13 chr1 149183166 149183316 -93481037 + MIR SINE MIR 89 262 0 2341 107 3 7 chr1 149183606 149183915 -93480438 + AluSx SINE Alu 1 308 -4 288 130 0 0 chr1 149183915 149183961 -93480392 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr1 149183988 149184018 -93480335 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 149184037 149184058 -93480295 + AT_rich Low_complexity Low_complexity 1 21 0 480 295 97 63 chr1 149184735 149185003 -93479350 - L2 LINE L2 -5 3267 2991 268 256 88 51 chr1 149185067 149185204 -93479149 + L2 LINE L2 3121 3262 -10 813 211 6 23 chr1 149186361 149186532 -93477821 - FRAM SINE Alu -8 168 1 301 322 48 62 chr1 149186939 149187147 -93477206 - L2 LINE L2 -68 3204 3000 245 273 162 0 chr1 149187653 149187752 -93476601 + MIR SINE MIR 32 146 -62 2265 102 6 13 chr1 149188723 149189037 -93475316 - AluSx SINE Alu 0 312 1 2331 74 27 3 chr1 149189227 149189524 -93474829 - AluY SINE Alu -7 304 1 439 203 60 68 chr1 149189962 149190095 -93474258 - L2 LINE L2 0 3272 3141 258 122 163 0 chr1 149190118 149190167 -93474186 + Alu SINE Alu 214 270 -31 1065 164 71 0 chr1 149190225 149190408 -93473945 - MER20 DNA MER1_type 0 219 24 2268 108 6 16 chr1 149190485 149190800 -93473553 + AluSx SINE Alu 1 312 0 313 227 235 8 chr1 149191451 149191583 -93472770 + MIR3 SINE MIR 35 196 -12 407 142 26 39 chr1 149192359 149192514 -93471839 + (TG)n Simple_repeat Simple_repeat 1 153 0 423 166 53 8 chr1 149192584 149192839 -93471514 + (TG)n Simple_repeat Simple_repeat 1 266 0 283 147 47 47 chr1 149192883 149193053 -93471300 + (TG)n Simple_repeat Simple_repeat 1 170 0 210 77 62 31 chr1 149193174 149193239 -93471114 + (TG)n Simple_repeat Simple_repeat 2 68 0 509 137 53 0 chr1 149193257 149193388 -93470965 + (TG)n Simple_repeat Simple_repeat 1 138 0 198 222 0 0 chr1 149199914 149199950 -93464403 + MIR SINE MIR 97 132 -76 250 215 37 112 chr1 149201140 149201211 -93463142 - L2 LINE L2 -28 3244 3182 2129 120 27 10 chr1 149201211 149201374 -93462979 - AluSx SINE Alu -8 304 132 2301 101 0 13 chr1 149201374 149201681 -93462672 - AluSg SINE Alu -7 303 1 2129 120 27 10 chr1 149201681 149201816 -93462537 - AluSx SINE Alu -180 132 1 250 215 37 112 chr1 149201816 149201851 -93462502 - L2 LINE L2 -90 3182 3146 2366 83 0 20 chr1 149201910 149202212 -93462141 + AluSg SINE Alu 1 296 -14 872 89 42 47 chr1 149202562 149202752 -93461601 - Charlie5 DNA MER1_type 0 2624 2436 1042 160 0 0 chr1 149202765 149202915 -93461438 - FRAM SINE Alu -21 155 6 1077 162 9 22 chr1 149203061 149203283 -93461070 + MLT-int LTR MaLR 131 349 -1386 2297 94 7 3 chr1 149203288 149203587 -93460766 + AluSp SINE Alu 1 300 -13 403 240 0 0 chr1 149203589 149203689 -93460664 - Charlie5 DNA MER1_type -157 2455 2356 662 230 75 11 chr1 149203694 149203881 -93460472 - Charlie5 DNA MER1_type -2412 200 2 260 286 84 51 chr1 149203951 149204129 -93460224 - L2 LINE L2 -5 3308 3125 352 321 74 53 chr1 149204236 149204426 -93459927 - MIR SINE MIR -22 240 47 2560 90 0 0 chr1 149204568 149204880 -93459473 + AluSx SINE Alu 1 312 0 1088 168 0 0 chr1 149204880 149205047 -93459306 + AluJb SINE Alu 135 301 -11 2192 117 3 0 chr1 149205249 149205539 -93458814 + AluSg SINE Alu 5 295 -15 1712 93 0 0 chr1 149205754 149205968 -93458385 + AluSg/x SINE Alu 86 299 -13 403 240 0 0 chr1 149205970 149206070 -93458283 - Charlie5 DNA MER1_type -157 2455 2356 633 241 75 11 chr1 149206075 149206262 -93458091 - Charlie5 DNA MER1_type -2412 200 2 260 286 84 51 chr1 149206332 149206510 -93457843 - L2 LINE L2 -5 3308 3125 352 321 74 53 chr1 149206617 149206807 -93457546 - MIR SINE MIR -22 240 47 2344 109 0 3 chr1 149206949 149207262 -93457091 + AluSq SINE Alu 1 312 -1 2337 98 0 7 chr1 149208347 149208652 -93455701 - AluSq SINE Alu -10 303 1 356 329 82 27 chr1 149208717 149208863 -93455490 + L2 LINE L2 3117 3270 -2 2714 51 0 6 chr1 149208907 149209220 -93455133 + AluY SINE Alu 1 311 0 195 100 0 0 chr1 149209342 149209372 -93454981 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 201 318 40 108 chr1 149209374 149209522 -93454831 - L2 LINE L2 -95 3177 3040 323 272 19 0 chr1 149209571 149209674 -93454679 + L1M4 LINE L1 2915 3019 -3127 1289 241 64 11 chr1 149209732 149210093 -93454260 + L2 LINE L2 580 959 -2355 679 245 16 22 chr1 149210076 149210260 -93454093 + L2 LINE L2 3131 3313 0 * 374 326 38 8 chr1 149210819 149210951 -93453402 + MIR3 SINE MIR 9 144 -64 2344 107 0 0 chr1 149211229 149211528 -93452825 - AluSc SINE Alu -10 299 1 2207 95 7 0 chr1 149211543 149211848 -93452505 - AluSp SINE Alu 0 307 1 227 316 18 0 chr1 149212637 149212694 -93451659 - L3 LINE CR1 -4 1573 1516 242 216 0 0 chr1 149214053 149214104 -93450249 + 5S rRNA rRNA 35 85 -36 331 191 127 27 chr1 149214141 149214251 -93450102 + MIR3 SINE MIR 11 131 -77 795 248 92 16 chr1 149214273 149214523 -93449830 + L2 LINE L2 3045 3313 0 450 245 147 0 chr1 149216919 149217062 -93447291 + L2 LINE L2 3109 3272 0 421 195 201 20 chr1 149217674 149217823 -93446530 + MER5A DNA MER1_type 14 189 0 719 200 12 6 chr1 149217833 149217993 -93446360 - MER5B DNA MER1_type -3 175 15 2248 121 0 3 chr1 149219038 149219343 -93445010 + AluSx SINE Alu 1 304 -8 259 188 0 0 chr1 149220008 149220072 -93444281 - L1MB2 LINE L1 -30 6141 6078 3247 123 56 53 chr1 149220080 149220683 -93443670 - L1MA4 LINE L1 -283 6199 5595 245 51 77 0 chr1 149220731 149220770 -93443583 - L1P LINE L1 -722 5429 5388 * 13374 190 42 26 chr1 149220767 149221501 -93442852 - L1MA4 LINE L1 -1061 5267 4546 2019 147 0 0 chr1 149221501 149221787 -93442566 - AluSx SINE Alu -26 286 1 13374 190 42 26 chr1 149221787 149222660 -93441693 - L1MA4 LINE L1 -1782 4546 3689 2155 138 3 0 chr1 149222660 149222965 -93441388 - AluSx SINE Alu -6 306 1 13374 190 42 26 chr1 149222965 149224795 -93439558 - L1MA4 LINE L1 -2639 3689 1770 237 33 0 0 chr1 149224795 149224825 -93439528 + (T)n Simple_repeat Simple_repeat 1 30 0 3065 245 36 24 chr1 149226025 149226524 -93437829 - L1MA4 LINE L1 -4540 1788 1296 2258 112 3 0 chr1 149226524 149226819 -93437534 - AluSp SINE Alu -12 301 6 3065 245 36 24 chr1 149226819 149226902 -93437451 - L1MA4 LINE L1 -5032 1296 1215 2236 128 0 10 chr1 149226902 149227215 -93437138 - AluSg SINE Alu 0 310 1 3065 245 36 24 chr1 149227215 149227636 -93436717 - L1MA4 LINE L1 -5113 1215 772 2697 172 6 1 chr1 149227673 149228331 -93436022 - L1MA4 LINE L1 -4625 703 4 514 259 16 90 chr1 149228395 149228650 -93435703 - L2 LINE L2 0 3313 3078 1969 146 3 7 chr1 149228652 149228946 -93435407 - AluJb SINE Alu -19 293 1 2612 41 3 0 chr1 149229580 149229873 -93434480 + AluY SINE Alu 1 294 -17 762 235 141 42 chr1 149230393 149230779 -93433574 - L2 LINE L2 -172 3141 2644 2509 52 10 10 chr1 149231515 149231825 -93432528 - AluY SINE Alu -1 310 1 1967 119 10 19 chr1 149231827 149232137 -93432216 - AluSx SINE Alu -5 307 1 948 113 8 8 chr1 149232140 149232273 -93432080 - AluSq/x SINE Alu -179 133 1 2470 85 0 3 chr1 149233597 149233903 -93430450 + AluSq SINE Alu 1 305 -8 418 219 109 0 chr1 149234257 149234385 -93429968 + MLT1C LTR MaLR 97 238 -229 2035 149 3 7 chr1 149235991 149236293 -93428060 - AluSx SINE Alu -11 301 1 1990 90 72 14 chr1 149236523 149236802 -93427551 - AluY SINE Alu -15 296 2 867 316 91 53 chr1 149236880 149237526 -93426827 + L3 LINE CR1 905 1575 -2 180 261 0 0 chr1 149237545 149237591 -93426762 - MIR SINE MIR -71 137 92 185 239 43 0 chr1 149237627 149237673 -93426680 + L2 LINE L2 1369 1416 -1898 389 206 37 47 chr1 149238158 149238265 -93426088 + MER21B LTR ERV1 1 106 -757 * 438 151 27 14 chr1 149238263 149238336 -93426017 + MER21B LTR ERV1 19 92 -771 3730 206 49 13 chr1 149238336 149239128 -93425225 + MER21B LTR ERV1 43 863 0 199 390 98 12 chr1 149239283 149239447 -93424906 - L3b LINE CR1 -100 1483 1306 1091 120 39 103 chr1 149239530 149239764 -93424589 + MER20 DNA MER1_type 1 219 0 261 284 119 8 chr1 149240099 149240233 -93424120 + MIR SINE MIR 41 189 -73 22 56 0 0 chr1 149241408 149241444 -93422909 + AT_rich Low_complexity Low_complexity 1 36 0 339 275 38 30 chr1 149241551 149241682 -93422671 + MIR SINE MIR 20 151 -111 2271 120 0 0 chr1 149241766 149242074 -93422279 + AluSx SINE Alu 1 308 -4 334 337 82 0 chr1 149242460 149242644 -93421709 - MIR SINE MIR 0 262 64 836 212 153 52 chr1 149243461 149243603 -93420750 + MLT1H LTR MaLR 30 156 -253 1949 149 0 17 chr1 149243603 149243905 -93420448 + AluJo SINE Alu 1 297 -15 836 212 153 52 chr1 149243905 149244198 -93420155 + MLT1H LTR MaLR 156 405 -4 1186 208 33 113 chr1 149244417 149244790 -93419563 - L1MC4 LINE L1 -1 8041 7709 2201 108 6 3 chr1 149244790 149245104 -93419249 + L1PA15 LINE L1 5850 6164 -1 1186 208 33 113 chr1 149245104 149245183 -93419170 - L1MC4 LINE L1 -333 7709 7625 1393 178 95 4 chr1 149245186 149245450 -93418903 - AluJb SINE Alu -22 290 3 806 191 330 0 chr1 149245474 149245614 -93418739 - AluJo SINE Alu -4 308 215 189 0 0 0 chr1 149245614 149245635 -93418718 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 806 191 330 0 chr1 149245635 149245724 -93418629 - AluJo SINE Alu -97 215 3 248 246 31 0 chr1 149245728 149245793 -93418560 - L1MC4 LINE L1 -427 7615 7549 367 236 45 9 chr1 149245849 149245959 -93418394 - L1MC4 LINE L1 -507 7535 7422 320 202 51 45 chr1 149246736 149246914 -93417439 + (CATTA)n Simple_repeat Simple_repeat 2 180 0 293 250 152 0 chr1 149247500 149247592 -93416761 - L2 LINE L2 -51 3221 3116 1296 150 19 2 chr1 149247670 149247899 -93416454 + L1MA4 LINE L1 6053 6291 -14 1815 119 58 64 chr1 149247899 149248194 -93416159 - AluSx SINE Alu -19 293 1 1296 150 19 2 chr1 149248194 149248210 -93416143 + L1MA4 LINE L1 6291 6305 0 2108 175 71 19 chr1 149248359 149248822 -93415531 + Charlie1b DNA MER1_type 28 514 -9 2626 116 18 98 chr1 149249199 149249244 -93415109 + LTR46 LTR ERV1 1 48 -412 2034 106 32 0 chr1 149249244 149249528 -93414825 - AluSq SINE Alu -20 293 1 2626 116 18 98 chr1 149249528 149249982 -93414371 + LTR46 LTR ERV1 48 460 0 321 309 0 42 chr1 149250278 149250443 -93413910 + GA-rich Low_complexity Low_complexity 1 158 0 1663 127 103 4 chr1 149251005 149251302 -93413051 + AluSc SINE Alu 1 322 0 278 43 0 130 chr1 149251307 149251353 -93413000 - LTR46 LTR ERV1 -420 40 1 548 243 44 0 chr1 149251480 149251616 -93412737 + MIR SINE MIR 7 148 -114 1787 168 3 16 chr1 149251994 149252298 -93412055 - AluJb SINE Alu -12 300 1 302 258 0 11 chr1 149252526 149252615 -93411738 - L1ME4a LINE L1 -88 6033 5946 380 303 103 34 chr1 149252687 149253163 -93411190 - L1ME4a LINE L1 -1988 5820 5312 267 103 0 0 chr1 149253164 149253203 -93411150 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1816 134 0 11 chr1 149253206 149253467 -93410886 - AluSx SINE Alu -54 258 1 535 282 51 48 chr1 149253773 149254085 -93410268 + L2 LINE L2 2998 3310 -3 2407 95 0 0 chr1 149254156 149254452 -93409901 - AluSg SINE Alu -14 296 1 309 281 123 51 chr1 149254572 149254945 -93409408 - L1ME4a LINE L1 -1495 4651 4252 1840 178 0 19 chr1 149255032 149255346 -93409007 - AluJb SINE Alu -4 308 1 2146 102 17 17 chr1 149255356 149255650 -93408703 - AluSq SINE Alu -19 294 1 2107 108 10 10 chr1 149255782 149256079 -93408274 - AluSq SINE Alu -16 297 1 26 30 0 0 chr1 149256265 149256298 -93408055 + AT_rich Low_complexity Low_complexity 1 33 0 2176 121 26 3 chr1 149256746 149257051 -93407302 - AluSx SINE Alu 0 312 1 703 247 11 17 chr1 149257249 149257427 -93406926 + MIR SINE MIR 8 184 -78 708 223 83 123 chr1 149257430 149257838 -93406515 - L2 LINE L2 -1 3312 2921 2275 102 0 3 chr1 149259464 149259757 -93404596 - AluSg SINE Alu -16 294 3 2058 100 53 17 chr1 149261137 149261436 -93402917 + AluY SINE Alu 1 310 -1 353 261 138 14 chr1 149261609 149261747 -93402606 - Charlie8 DNA MER1_type -2188 229 75 557 268 76 0 chr1 149261894 149262051 -93402302 + MIR3 SINE MIR 31 199 -9 208 272 87 33 chr1 149262983 149263075 -93401278 + L2 LINE L2 3134 3230 -42 452 260 59 29 chr1 149263171 149263375 -93400978 + MIR SINE MIR 2 211 -51 1895 142 43 0 chr1 149263442 149263723 -93400630 - AluJb SINE Alu -19 293 1 512 239 120 37 chr1 149264606 149264818 -93399535 + MIR SINE MIR 2 229 -33 181 147 88 0 chr1 149264795 149264829 -93399524 + L2 LINE L2 3211 3247 -25 * 213 269 19 0 chr1 149264994 149265046 -93399307 + GA-rich Low_complexity Low_complexity 1 53 0 346 300 10 0 chr1 149267417 149267517 -93396836 - MIR SINE MIR -115 147 47 696 95 11 0 chr1 149267859 149267954 -93396399 - AluSg SINE Alu -213 97 2 214 325 103 24 chr1 149272827 149272953 -93391400 - L2 LINE L2 -64 3208 3073 932 251 69 97 chr1 149273634 149274244 -93390109 - L1ME3A LINE L1 0 6170 5578 1917 126 30 0 chr1 149274247 149274516 -93389837 - AluSg SINE Alu -15 295 19 2362 87 0 16 chr1 149275704 149276015 -93388338 - AluSc SINE Alu -3 306 1 244 291 12 47 chr1 149276906 149276992 -93387361 - L2 LINE L2 0 3313 3231 * 654 224 71 16 chr1 149276968 149277151 -93387202 - L2 LINE L2 -680 2634 2442 753 169 108 0 chr1 149277181 149277329 -93387024 - MLT1F LTR MaLR 0 542 379 934 132 0 22 chr1 149278123 149278259 -93386094 + FLAM_C SINE Alu 1 133 -10 2063 144 0 3 chr1 149278620 149278919 -93385434 + AluJb SINE Alu 1 298 -14 554 266 128 16 chr1 149279587 149279802 -93384551 - MIR SINE MIR 0 262 20 2114 152 0 0 chr1 149282525 149282827 -93381526 + AluSx SINE Alu 1 302 -10 1381 103 0 0 chr1 149283266 149283451 -93380902 + AluSg/x SINE Alu 119 303 -6 298 235 15 0 chr1 149283559 149283627 -93380726 - MIR SINE MIR 0 262 194 541 253 105 95 chr1 149283777 149284157 -93380196 - L1MC4a LINE L1 -1638 6170 5787 469 106 0 0 chr1 149284241 149284307 -93380046 + AluSp/q SINE Alu 232 297 -16 2297 108 0 0 chr1 149284317 149284613 -93379740 + AluSq SINE Alu 1 296 -17 1142 47 0 0 chr1 149284613 149284741 -93379612 + AluY SINE Alu 1 128 -183 2067 144 7 0 chr1 149285077 149285368 -93378985 + AluSx SINE Alu 1 293 -19 256 302 139 0 chr1 149285530 149285616 -93378737 - MIR SINE MIR -83 125 28 485 274 39 28 chr1 149286335 149286514 -93377839 - L2 LINE L2 -25 3288 3108 2144 74 29 45 chr1 149286570 149286880 -93377473 + AluSx SINE Alu 1 305 -7 213 39 0 0 chr1 149287665 149287691 -93376662 + (CAG)n Simple_repeat Simple_repeat 1 26 0 1435 93 0 0 chr1 149290767 149290949 -93373404 + AluSx SINE Alu 1 182 -130 280 206 118 0 chr1 149292751 149292819 -93371534 - MER5C DNA MER1_type 0 324 249 388 226 57 73 chr1 149292955 149293079 -93371274 - MER5C DNA MER1_type -202 122 1 571 326 54 14 chr1 149293540 149293834 -93370519 + HERV16 LTR ERVL 1124 1429 -3567 308 243 76 42 chr1 149293962 149294106 -93370247 + L2 LINE L2 1932 2080 -1234 497 310 137 59 chr1 149294296 149295108 -93369245 + L2 LINE L2 2068 2942 -372 245 274 83 68 chr1 149295266 149295383 -93368970 + MIR SINE MIR 10 126 -136 2281 105 0 22 chr1 149295383 149295698 -93368655 - AluSq SINE Alu -5 308 1 245 274 83 68 chr1 149295698 149295762 -93368591 + MIR SINE MIR 126 188 -74 797 232 101 10 chr1 149295792 149295999 -93368354 + MIR SINE MIR 7 232 -30 216 243 0 0 chr1 149296056 149296093 -93368260 - L2 LINE L2 -30 3283 3247 294 170 75 0 chr1 149296096 149296149 -93368204 + L2 LINE L2 3211 3267 -5 299 167 33 0 chr1 149297341 149297401 -93366952 - L2 LINE L2 -2 3270 3209 283 297 22 13 chr1 149300394 149300539 -93363814 + MIR SINE MIR 20 251 -11 2072 138 3 7 chr1 149300676 149300980 -93363373 + AluJb SINE Alu 1 303 -9 1134 205 126 13 chr1 149301016 149301318 -93363035 - MER2 DNA MER2_type 0 345 10 292 298 34 0 chr1 149302475 149302589 -93361764 + MIR SINE MIR 47 167 -41 256 365 58 0 chr1 149302588 149302692 -93361661 - MER91C DNA MER1_type -30 110 1 * 184 294 0 0 chr1 149304372 149304423 -93359930 - L2 LINE L2 -219 3053 3003 973 173 6 0 chr1 149304614 149304770 -93359583 - FRAM SINE Alu -9 157 1 238 288 10 156 chr1 149304815 149305020 -93359333 + L2 LINE L2 3020 3194 -78 701 221 172 8 chr1 149305031 149305275 -93359078 - L2 LINE L2 0 3313 3030 1929 180 0 0 chr1 149305291 149305596 -93358757 - AluSx SINE Alu -6 306 2 508 318 81 0 chr1 149305649 149305822 -93358531 + MIR SINE MIR 63 249 -13 658 251 70 6 chr1 149305983 149306154 -93358199 + MIR3 SINE MIR 20 201 -7 1257 179 40 70 chr1 149307412 149307714 -93356639 - AluJb SINE Alu -16 296 4 243 0 0 0 chr1 149308163 149308190 -93356163 + (T)n Simple_repeat Simple_repeat 1 27 0 1916 142 29 3 chr1 149308231 149308541 -93355812 - L1MC1 LINE L1 -5 6328 6011 207 88 0 0 chr1 149310469 149310503 -93353850 + (CA)n Simple_repeat Simple_repeat 1 34 0 319 259 231 19 chr1 149312004 149312112 -93352241 - MIR3 SINE MIR -41 167 37 387 0 0 0 chr1 149314434 149314477 -93349876 + (TG)n Simple_repeat Simple_repeat 1 43 0 243 0 0 0 chr1 149314479 149314506 -93349847 + (GA)n Simple_repeat Simple_repeat 2 28 0 309 93 0 0 chr1 149314759 149314802 -93349551 + U2 snRNA snRNA 1 43 -145 217 154 26 0 chr1 149315019 149315058 -93349295 + GA-rich Low_complexity Low_complexity 4 43 0 209 289 0 0 chr1 149315183 149315235 -93349118 + CT-rich Low_complexity Low_complexity 2 53 0 2137 92 0 0 chr1 149315470 149315798 -93348555 + AluSc SINE Alu 1 328 0 209 217 0 0 chr1 149315920 149315966 -93348387 + T-rich Low_complexity Low_complexity 1 46 0 1797 147 3 25 chr1 149316038 149316324 -93348029 + AluJb SINE Alu 1 281 -31 237 33 0 0 chr1 149316324 149316354 -93347999 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1797 147 3 25 chr1 149316354 149316386 -93347967 + AluJb SINE Alu 281 312 0 778 197 46 0 chr1 149316415 149316567 -93347786 - AluJb SINE Alu -32 280 122 404 254 34 73 chr1 149316924 149317058 -93347295 + MIR3 SINE MIR 33 160 -48 1794 92 59 29 chr1 149317058 149317330 -93347023 + AluY SINE Alu 25 304 -7 404 254 34 73 chr1 149317330 149317372 -93346981 + MIR3 SINE MIR 160 202 -6 388 327 0 0 chr1 149318382 149318489 -93345864 - L2 LINE L2 0 3313 3207 203 265 20 0 chr1 149318792 149318841 -93345512 + MIR SINE MIR 65 114 -94 350 248 40 88 chr1 149318911 149318977 -93345376 - MER5B DNA MER1_type -59 119 60 2175 108 0 0 chr1 149318977 149319273 -93345080 - AluSg SINE Alu -14 296 1 350 248 40 88 chr1 149319273 149319331 -93345022 - MER5B DNA MER1_type -118 60 1 1253 188 76 36 chr1 149319386 149319662 -93344691 + MLT1A1 LTR MaLR 1 287 -78 387 269 105 7 chr1 149319686 149319822 -93344531 - MIR SINE MIR -48 160 5 242 335 0 55 chr1 149320005 149320169 -93344184 - L2 LINE L2 -173 3099 2945 272 333 9 9 chr1 149320300 149320408 -93343945 - MER5A DNA MER1_type -25 164 57 456 228 37 66 chr1 149321473 149321609 -93342744 - MIR SINE MIR -59 203 72 262 338 169 7 chr1 149321933 149322005 -93342348 + MIR SINE MIR 15 74 -188 1669 139 10 50 chr1 149322005 149322308 -93342045 - AluJo SINE Alu -21 291 1 262 338 169 7 chr1 149322308 149322383 -93341970 + MIR SINE MIR 74 186 -76 300 302 75 38 chr1 149322733 149322892 -93341461 - L2 LINE L2 -2 3270 3106 324 48 0 0 chr1 149323513 149323555 -93340798 + (TG)n Simple_repeat Simple_repeat 1 42 0 279 211 0 0 chr1 149323634 149323686 -93340667 - L2 LINE L2 0 3313 3262 834 341 4 4 chr1 149323816 149324071 -93340282 + MIR SINE MIR 8 262 0 405 0 0 0 chr1 149324702 149324747 -93339606 + (CA)n Simple_repeat Simple_repeat 2 46 0 446 290 90 7 chr1 149325361 149325506 -93338847 + MIR SINE MIR 2 158 -104 383 310 110 14 chr1 149326504 149326649 -93337704 + L2 LINE L2 3114 3272 0 412 297 153 29 chr1 149326701 149326910 -93337443 + MIR SINE MIR 28 262 0 267 114 0 0 chr1 149327333 149327377 -93336976 + MIR SINE MIR 102 145 -117 381 332 64 16 chr1 149327798 149327997 -93336356 - MIR SINE MIR -43 219 5 309 291 13 26 chr1 149328295 149328446 -93335907 + G-rich Low_complexity Low_complexity 6 154 0 190 0 32 32 chr1 149328538 149328569 -93335784 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 322 257 183 0 chr1 149329942 149330057 -93334296 - MIR SINE MIR -64 144 16 241 269 67 10 chr1 149330356 149330460 -93333893 - MIR SINE MIR -76 132 23 233 340 29 7 chr1 149330752 149330882 -93333471 + MIR SINE MIR 69 203 -5 552 238 81 19 chr1 149332286 149332446 -93331907 - MIR3 SINE MIR -15 193 24 449 318 13 20 chr1 149332739 149332890 -93331463 - L2 LINE L2 -8 3264 3115 475 196 72 0 chr1 149336596 149336693 -93327660 - MIR SINE MIR -67 141 38 880 214 39 0 chr1 149337969 149338147 -93326206 + MER5A DNA MER1_type 5 189 0 696 260 58 6 chr1 149338755 149338928 -93325425 + MER91A DNA MER1_type 15 196 0 204 67 0 0 chr1 149339198 149339228 -93325125 + (TCC)n Simple_repeat Simple_repeat 1 30 0 216 162 0 0 chr1 149339459 149339496 -93324857 + C-rich Low_complexity Low_complexity 5 41 0 1751 309 119 18 chr1 149339971 149340792 -93323561 - L3 LINE CR1 -11 1566 663 584 330 13 13 chr1 149341818 149342051 -93322302 + MIR SINE MIR 30 262 0 23 0 0 0 chr1 149343107 149343130 -93321223 + GC_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr1 149344681 149344705 -93319648 + (TG)n Simple_repeat Simple_repeat 2 25 0 180 152 0 0 chr1 149345863 149345896 -93318457 + A-rich Low_complexity Low_complexity 1 33 0 311 246 105 9 chr1 149346148 149346262 -93318091 + MIR3 SINE MIR 35 159 -49 333 273 129 8 chr1 149346440 149346572 -93317781 - L2 LINE L2 -4 3268 3121 505 256 75 0 chr1 149346621 149346754 -93317599 - MIR SINE MIR -70 192 50 4654 131 68 4 chr1 149346787 149347586 -93316767 - L1MC1 LINE L1 -1 6332 5483 589 271 145 14 chr1 149348045 149348266 -93316087 + MIR SINE MIR 12 261 -1 247 261 0 0 chr1 149348268 149348333 -93316020 + (CAT)n Simple_repeat Simple_repeat 3 67 0 2010 148 3 0 chr1 149348966 149349277 -93315076 + AluJb SINE Alu 1 312 0 2142 107 0 49 chr1 149350173 149350501 -93313852 - AluSx SINE Alu 0 312 1 338 321 38 9 chr1 149351291 149351397 -93312956 + MIR SINE MIR 26 134 -128 233 323 169 42 chr1 149352135 149352491 -93311862 - L2 LINE L2 -786 2528 2128 580 313 61 77 chr1 149352525 149352805 -93311548 - L2 LINE L2 -456 2858 2590 2219 146 54 57 chr1 149352805 149352856 -93311497 - MSTA LTR MaLR 0 428 378 1488 171 3 48 chr1 149352856 149353172 -93311181 + AluJo SINE Alu 11 312 0 2219 146 54 57 chr1 149353172 149353545 -93310808 - MSTA LTR MaLR -50 378 5 580 313 61 77 chr1 149353545 149353824 -93310529 - L2 LINE L2 -724 2590 2308 1776 79 9 9 chr1 149354003 149354232 -93310121 - MER30 DNA MER1_type -1 229 1 2240 92 0 7 chr1 149354428 149354754 -93309599 - AluSx SINE Alu 0 312 1 277 358 163 27 chr1 149354778 149355669 -93308684 + L2 LINE L2 1747 2758 -556 237 111 0 56 chr1 149356976 149357030 -93307323 + (CCCGG)n Simple_repeat Simple_repeat 3 53 0 272 343 19 52 chr1 149360093 149360306 -93304047 + L3b LINE CR1 1209 1414 -169 264 215 51 13 chr1 149360519 149360598 -93303755 + MIR SINE MIR 1 82 -180 2452 178 67 20 chr1 149362535 149363030 -93301323 - Charlie1b DNA MER1_type -4 519 2 677 243 48 0 chr1 149363163 149363354 -93300999 + MIR SINE MIR 50 249 -13 294 224 80 88 chr1 149363421 149363546 -93300807 - MIR3 SINE MIR -88 120 15 183 232 145 14 chr1 149365899 149365968 -93298385 - MIR SINE MIR -87 121 44 222 289 56 22 chr1 149367236 149367326 -93297027 + L3b LINE CR1 1293 1385 -198 384 339 8 0 chr1 149367833 149367960 -93296393 + MIR3 SINE MIR 70 197 -11 232 269 111 53 chr1 149367976 149368184 -93296169 + MIR SINE MIR 17 236 -26 397 274 90 61 chr1 149368249 149368494 -93295859 - L2 LINE L2 -213 3059 2808 223 250 194 0 chr1 149369901 149369973 -93294380 + MIR SINE MIR 43 128 -80 336 279 96 0 chr1 149370049 149370185 -93294168 - MIR SINE MIR -56 206 58 427 308 65 22 chr1 149370239 149370424 -93293929 + MER117 DNA MER1_type 4 196 -1 227 301 103 82 chr1 149370498 149370780 -93293573 - L2 LINE L2 -68 3204 2917 297 231 22 22 chr1 149371594 149371685 -93292668 - MIR SINE MIR -108 154 64 234 0 0 0 chr1 149373571 149373597 -93290756 + (CA)n Simple_repeat Simple_repeat 2 27 0 435 240 46 22 chr1 149374396 149374548 -93289805 - MIR3 SINE MIR -50 158 1 255 301 246 15 chr1 149375671 149375870 -93288483 + MIR SINE MIR 12 256 -6 1726 152 81 0 chr1 149375983 149376266 -93288087 + AluSc SINE Alu 1 306 -3 1959 152 3 0 chr1 149376772 149377068 -93287285 + AluJo SINE Alu 1 297 -15 217 308 0 0 chr1 149377414 149377479 -93286874 - L2 LINE L2 -1 3271 3207 411 38 0 0 chr1 149377484 149377537 -93286816 + (TA)n Simple_repeat Simple_repeat 2 54 0 254 270 83 77 chr1 149377648 149378013 -93286340 - L2 LINE L2 -181 3091 2726 345 261 11 0 chr1 149378098 149378190 -93286163 + MIR SINE MIR 98 190 -72 1802 159 0 28 chr1 149379192 149379481 -93284872 + AluJb SINE Alu 1 281 -31 321 217 193 0 chr1 149380832 149380915 -93283438 + MIR SINE MIR 30 128 -80 22 0 0 0 chr1 149380957 149380979 -93283374 + AT_rich Low_complexity Low_complexity 1 22 0 1895 313 114 34 chr1 149381280 149382215 -93282138 - L3 LINE CR1 -184 1393 343 1747 162 14 3 chr1 149382215 149382499 -93281854 - AluJo SINE Alu -25 287 1 1895 313 114 34 chr1 149382499 149382743 -93281610 - L3 LINE CR1 -1234 343 120 396 0 0 0 chr1 149383916 149383960 -93280393 + (TG)n Simple_repeat Simple_repeat 2 45 0 1965 88 0 4 chr1 149384254 149384545 -93279808 - AluSx SINE Alu 0 323 34 230 139 0 0 chr1 149384545 149384581 -93279772 + L2 LINE L2 3268 3303 -10 597 240 89 25 chr1 149384901 149385175 -93279178 - LTR33 LTR ERVL -161 360 1 27 0 0 0 chr1 149385571 149385598 -93278755 + AT_rich Low_complexity Low_complexity 1 27 0 519 229 233 33 chr1 149385932 149386142 -93278211 + MIR SINE MIR 10 261 -1 180 77 0 0 chr1 149386153 149386179 -93278174 + (CAT)n Simple_repeat Simple_repeat 2 27 0 232 325 65 13 chr1 149387193 149387347 -93277006 - L2 LINE L2 -214 3058 2897 455 175 29 29 chr1 149387390 149387493 -93276860 - MER53 DNA DNA 0 189 87 1084 184 0 10 chr1 149389834 149390035 -93274318 + AluJo SINE Alu 11 209 -103 219 69 0 0 chr1 149390051 149390080 -93274273 + (A)n Simple_repeat Simple_repeat 1 29 0 2141 65 14 11 chr1 149390183 149390458 -93273895 + AluY SINE Alu 26 301 -10 1359 167 144 16 chr1 149392738 149392995 -93271358 + AluJo SINE Alu 2 291 -11 1570 181 52 0 chr1 149393007 149393294 -93271059 - AluJo SINE Alu -10 302 1 461 228 106 33 chr1 149393317 149393497 -93270856 - L1MC4 LINE L1 -59 7983 7791 235 297 69 0 chr1 149393937 149394038 -93270315 - MIR SINE MIR -60 202 95 376 300 141 12 chr1 149394515 149394685 -93269668 + MIR SINE MIR 18 209 -53 24 0 0 0 chr1 149394794 149394818 -93269535 + AT_rich Low_complexity Low_complexity 1 24 0 419 260 48 0 chr1 149395552 149395678 -93268675 - MIR SINE MIR -66 142 34 747 252 54 106 chr1 149395759 149396240 -93268113 - L2 LINE L2 -2 3311 2856 263 266 89 17 chr1 149396449 149396582 -93267771 - MIR SINE MIR -65 143 39 383 284 101 7 chr1 149396700 149396848 -93267505 - L2 LINE L2 0 3272 3111 382 343 32 62 chr1 149397108 149397449 -93266904 + L2 LINE L2 2402 2732 -582 204 298 54 73 chr1 149397509 149397612 -93266741 + L2 LINE L2 2836 2939 -333 261 0 0 0 chr1 149397612 149397641 -93266712 + (TG)n Simple_repeat Simple_repeat 2 30 0 2060 118 0 14 chr1 149397641 149397930 -93266423 - AluSx SINE Alu -27 285 1 204 298 54 73 chr1 149397930 149398030 -93266323 + L2 LINE L2 2937 3036 -236 209 229 0 42 chr1 149398207 149398255 -93266098 + L2 LINE L2 3226 3271 -1 222 289 137 85 chr1 149398273 149398484 -93265869 - MIR SINE MIR -9 253 32 1150 162 49 25 chr1 149398499 149398703 -93265650 + MER20 DNA MER1_type 3 211 -8 1916 185 9 3 chr1 149398703 149399022 -93265331 - MLT1A1 LTR MaLR 0 365 45 197 62 0 31 chr1 149399023 149399055 -93265298 + (TTTCC)n Simple_repeat Simple_repeat 5 35 0 228 146 0 42 chr1 149399873 149399921 -93264432 - MLT1A1 LTR MaLR -309 56 11 207 100 0 0 chr1 149401241 149401271 -93263082 + (GA)n Simple_repeat Simple_repeat 1 30 0 349 303 80 59 chr1 149401891 149402333 -93262020 - L2 LINE L2 -271 3001 2476 216 333 73 0 chr1 149402454 149402550 -93261803 - L2 LINE L2 -1167 2147 2045 1963 147 0 35 chr1 149402576 149402889 -93261464 - AluJo SINE Alu -10 302 1 273 208 100 54 chr1 149403595 149403725 -93260628 - L1ME4a LINE L1 -12 6109 5974 22 35 0 0 chr1 149403766 149403795 -93260558 + AT_rich Low_complexity Low_complexity 1 29 0 1762 160 0 77 chr1 149403835 149404172 -93260181 - AluJb SINE Alu -1 311 1 270 136 0 0 chr1 149404181 149404225 -93260128 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 2106 134 0 0 chr1 149404225 149404517 -93259836 - AluSx SINE Alu -20 292 1 549 279 105 55 chr1 149404540 149404692 -93259661 - L1ME4a LINE L1 -280 5841 5698 1584 173 73 0 chr1 149404692 149404964 -93259389 + AluJo SINE Alu 1 292 -20 549 279 105 55 chr1 149404964 149405366 -93258987 - L1ME4a LINE L1 -423 5698 5256 6099 132 35 6 chr1 149405514 149406564 -93257789 - L1MA4A LINE L1 -5 6298 5219 728 308 118 21 chr1 149406822 149407111 -93257242 + MER102a DNA MER1_type 1 317 -13 302 298 41 23 chr1 149407112 149407330 -93257023 - L1ME4a LINE L1 -1816 4330 4109 2041 198 115 36 chr1 149407349 149407855 -93256498 + MLT2B3 LTR ERVL 9 554 0 212 330 41 0 chr1 149409205 149409302 -93255051 + L3 LINE CR1 1472 1572 -5 405 253 80 7 chr1 149410530 149410680 -93253673 + MIR SINE MIR 98 258 -4 1044 157 0 0 chr1 149411268 149411421 -93252932 + FRAM SINE Alu 9 161 -15 221 322 33 22 chr1 149411689 149411779 -93252574 - MIR SINE MIR -80 128 38 468 291 103 11 chr1 149412306 149412481 -93251872 + MIR SINE MIR 20 210 -52 27 0 0 0 chr1 149412913 149412940 -93251413 + AT_rich Low_complexity Low_complexity 1 27 0 406 185 65 56 chr1 149413268 149413376 -93250977 - ORSL DNA AcHobo -2 273 165 1370 105 8 71 chr1 149413423 149413661 -93250692 + AluJo SINE Alu 88 310 -2 270 258 16 0 chr1 149413661 149413723 -93250630 - ORSL DNA AcHobo -209 66 4 241 304 58 0 chr1 149415136 149415205 -93249148 - L2 LINE L2 -63 3209 3137 217 290 130 23 chr1 149415544 149415675 -93248678 - L2 LINE L2 -557 2757 2613 342 294 29 52 chr1 149415901 149416037 -93248316 + L2 LINE L2 2924 3056 -216 256 360 0 40 chr1 149416196 149416321 -93248032 - L2 LINE L2 -2 3270 3151 1397 173 75 75 chr1 149416385 149416423 -93247930 - MLT2D LTR ERVL -3 411 374 246 32 0 0 chr1 149416423 149416454 -93247899 + (TG)n Simple_repeat Simple_repeat 2 32 0 1397 173 75 75 chr1 149416454 149416772 -93247581 - MLT2D LTR ERVL -40 374 52 1425 208 17 0 chr1 149416772 149417070 -93247283 + AluJb SINE Alu 3 305 -7 1397 173 75 75 chr1 149417070 149417123 -93247230 - MLT2D LTR ERVL -361 53 1 623 341 22 42 chr1 149417138 149417561 -93246792 - L2 LINE L2 -211 3061 2649 1696 182 11 95 chr1 149417579 149417948 -93246405 - MLT2B3 LTR ERVL 0 554 217 311 161 102 136 chr1 149419316 149419434 -93244919 - MLT1C LTR MaLR -353 114 1 258 260 77 53 chr1 149419960 149420129 -93244224 - L1ME4a LINE L1 -3 6187 6015 303 298 84 23 chr1 149420684 149420815 -93243538 - L1ME4a LINE L1 -1100 5115 4977 883 286 120 39 chr1 149420903 149421287 -93243066 + MLT1J LTR MaLR 26 440 -71 3105 154 30 49 chr1 149421287 149421883 -93242470 + MER34C LTR ERV1 1 585 0 229 208 13 65 chr1 149421883 149421959 -93242394 + MLT1J LTR MaLR 437 508 -3 300 298 71 40 chr1 149421973 149422220 -93242133 - L1ME4a LINE L1 -1337 4878 4611 2409 47 0 3 chr1 149422220 149422517 -93241836 + AluY SINE Alu 1 296 -15 300 298 71 40 chr1 149422517 149422689 -93241664 - L1ME4a LINE L1 -1604 4611 4446 862 227 37 3 chr1 149423583 149423862 -93240491 + MER89 LTR ERV1 4 391 -168 1219 195 49 15 chr1 149423862 149424129 -93240224 - MLT1A1 LTR MaLR 0 365 90 2069 128 71 34 chr1 149424130 149424481 -93239872 + THE1B LTR MaLR 1 364 0 2076 89 14 0 chr1 149424481 149424762 -93239591 + THE1B-int LTR MaLR 1 285 -1295 1610 82 52 9 chr1 149424762 149424934 -93239419 + MLT2A2 LTR ERVL 211 397 -56 324 0 0 0 chr1 149424934 149424970 -93239383 + (TA)n Simple_repeat Simple_repeat 2 37 0 1610 82 52 9 chr1 149424970 149425030 -93239323 + MLT2A2 LTR ERVL 397 453 0 414 152 29 67 chr1 149425030 149425097 -93239256 - MLT1A1 LTR MaLR -281 93 30 285 29 0 0 chr1 149425097 149425131 -93239222 + (TG)n Simple_repeat Simple_repeat 1 34 0 414 152 29 67 chr1 149425131 149425160 -93239193 - MLT1A1 LTR MaLR -344 30 1 855 140 28 56 chr1 149425160 149425338 -93239015 + MER89 LTR ERV1 387 559 0 1735 166 0 32 chr1 149425395 149425703 -93238650 - AluJo SINE Alu -14 298 1 22 0 0 0 chr1 149425764 149425786 -93238567 + AT_rich Low_complexity Low_complexity 1 22 0 398 298 109 15 chr1 149425953 149426292 -93238061 - L1ME4a LINE L1 -2093 4122 3752 329 289 12 12 chr1 149426298 149426381 -93237972 - L1ME4a LINE L1 -3904 2492 2410 308 348 45 27 chr1 149426447 149426671 -93237682 - L1 LINE L1 -2622 3593 3366 2294 96 3 0 chr1 149426757 149427069 -93237284 - AluSp SINE Alu 0 313 1 859 250 94 64 chr1 149427099 149427503 -93236850 - LTR16C LTR ERVL -5 486 71 382 232 0 21 chr1 149427753 149427848 -93236505 + MIR SINE MIR 170 262 0 2384 162 8 2 chr1 149427874 149428275 -93236078 - MER57A LTR ERV1 0 403 1 374 280 55 30 chr1 149428310 149428581 -93235772 - L1 LINE L1 -3182 2964 2687 502 330 76 11 chr1 149428813 149428998 -93235355 - L1ME4a LINE L1 -3829 2386 2190 2401 217 83 82 chr1 149429044 149429823 -93234530 + MER21B LTR ERV1 21 800 -63 22 0 0 0 chr1 149429853 149429875 -93234478 + AT_rich Low_complexity Low_complexity 1 22 0 591 189 38 0 chr1 149430083 149430189 -93234164 - FLAM_C SINE Alu -31 112 3 1934 125 14 0 chr1 149430667 149430978 -93233375 - AluSx SINE Alu 0 317 3 1673 233 69 75 chr1 149431325 149431980 -93232373 - MLT1E1 LTR MaLR 0 654 3 747 258 222 22 chr1 149432003 149432638 -93231715 - LTR50 LTR ERVL -8 787 3 3340 128 23 11 chr1 149433337 149433906 -93230447 - L1MB3 LINE L1 -11 6172 5597 1297 180 83 7 chr1 149434960 149435260 -93229093 - MER33 DNA MER1_type -1 323 1 180 156 0 0 chr1 149435279 149435311 -93229042 - MIR SINE MIR -1 261 230 1416 167 40 50 chr1 149435370 149435669 -93228684 - MLT1D LTR MaLR -209 296 1 181 225 0 0 chr1 149436044 149436084 -93228269 - MIR3 SINE MIR -28 180 141 229 246 31 0 chr1 149436198 149436213 -93228140 - MLT1K LTR MaLR 0 588 522 233 240 0 0 chr1 149436213 149436263 -93228090 - LTR67 LTR ERVL -14 543 494 2373 82 0 0 chr1 149436736 149437042 -93227311 - AluSc SINE Alu -3 306 1 911 250 46 58 chr1 149437711 149438059 -93226294 - LTR16B LTR ERVL -10 454 111 2383 150 13 3 chr1 149438373 149438753 -93225600 - MLT1B LTR MaLR -6 384 1 2270 85 3 0 chr1 149438950 149439243 -93225110 + AluSp SINE Alu 1 294 -19 180 257 54 68 chr1 149439368 149439442 -93224911 - L2 LINE L2 -2111 1203 1131 183 339 177 31 chr1 149439921 149440113 -93224240 + L2 LINE L2 3052 3271 -1 223 232 74 53 chr1 149441893 149441988 -93222365 - L3b LINE CR1 -137 1446 1350 1166 63 13 0 chr1 149442890 149443049 -93221304 + (TTTC)n Simple_repeat Simple_repeat 2 162 0 412 157 205 12 chr1 149443051 149443134 -93221219 - FLAM_A SINE Alu -26 116 18 577 270 56 63 chr1 149443499 149443784 -93220569 - L1MC4a LINE L1 -157 5964 5682 270 0 0 0 chr1 149443807 149443837 -93220516 + (CA)n Simple_repeat Simple_repeat 2 31 0 296 298 201 59 chr1 149443841 149444368 -93219985 + L2 LINE L2 2163 2764 -550 271 255 31 61 chr1 149444649 149444747 -93219606 + L2 LINE L2 3219 3313 0 201 215 25 13 chr1 149445594 149445673 -93218680 + GA-rich Low_complexity Low_complexity 5 84 0 224 216 20 0 chr1 149446399 149446450 -93217903 + MIR3 SINE MIR 151 202 -6 1674 231 90 65 chr1 149448604 149449163 -93215190 + MER77 LTR ERV1 52 598 -7 1566 134 7 60 chr1 149449831 149450163 -93214190 - AluJb SINE Alu 0 316 1 1860 128 35 3 chr1 149450875 149451157 -93213196 - AluSx SINE Alu -19 293 3 7120 162 23 22 chr1 149451635 149452642 -93211711 + L1MA7 LINE L1 3958 4962 -1329 1079 50 14 0 chr1 149452642 149452782 -93211571 + L1PA6 LINE L1 6008 6149 -5 7120 162 23 22 chr1 149452782 149454103 -93210250 + L1MA7 LINE L1 4962 6289 -2 533 257 80 44 chr1 149454595 149454844 -93209509 + L2 LINE L2 3053 3310 -3 302 282 59 0 chr1 149455218 149455303 -93209050 + MIR SINE MIR 41 130 -78 343 318 21 78 chr1 149455718 149455841 -93208512 - MER5A DNA MER1_type -1 188 78 2106 114 0 3 chr1 149455841 149456147 -93208206 - AluSg SINE Alu -5 305 1 343 318 21 78 chr1 149456147 149456215 -93208138 - MER5A DNA MER1_type -111 78 8 469 280 27 47 chr1 149456702 149456852 -93207501 - MIR SINE MIR 0 262 116 575 217 23 8 chr1 149457009 149457138 -93207215 + MER94 DNA DNA 1 131 -3 299 329 117 17 chr1 149457139 149457379 -93206974 + L2 LINE L2 1322 1585 -1729 315 123 18 0 chr1 149457507 149457564 -93206789 - AluS SINE Alu -242 58 1 2022 106 3 3 chr1 149457756 149458048 -93206305 - AluSg SINE Alu -18 292 1 221 355 28 14 chr1 149458088 149458271 -93206082 + L2 LINE L2 2792 2976 -337 822 261 91 16 chr1 149458812 149459065 -93205288 - LTR16C LTR ERVL 0 491 220 1983 113 34 0 chr1 149459171 149459463 -93204890 + AluSg SINE Alu 1 302 -8 2978 26 0 0 chr1 149459558 149459898 -93204455 + L1PA4 LINE L1 5804 6143 -12 1850 154 0 13 chr1 149461160 149461465 -93202888 + AluJo SINE Alu 1 301 -11 311 287 60 49 chr1 149461688 149462048 -93202305 + LTR16B LTR ERVL 27 458 -6 2361 151 12 60 chr1 149462130 149462294 -93202059 - L1MA8 LINE L1 -4 6287 6117 2230 83 0 0 chr1 149462294 149462582 -93201771 - AluSc SINE Alu -21 288 1 2361 151 12 60 chr1 149462582 149462776 -93201577 - L1MA8 LINE L1 -174 6117 5957 2417 57 0 10 chr1 149462776 149463090 -93201263 - AluY SINE Alu 0 311 1 2361 151 12 60 chr1 149463090 149463227 -93201126 - L1MA8 LINE L1 -334 5957 5815 1349 190 4 16 chr1 149463486 149463744 -93200609 - AluJo SINE Alu -57 255 1 1367 109 36 9 chr1 149463744 149463965 -93200388 - L1MA8 LINE L1 -466 5825 5599 459 0 0 0 chr1 149466388 149466439 -93197914 + (TG)n Simple_repeat Simple_repeat 2 52 0 202 229 0 0 chr1 149467124 149467172 -93197181 + (TA)n Simple_repeat Simple_repeat 2 49 0 27 0 0 0 chr1 149467521 149467548 -93196805 + AT_rich Low_complexity Low_complexity 1 27 0 2228 112 0 0 chr1 149469427 149469731 -93194622 - AluSx SINE Alu -8 304 1 256 319 41 53 chr1 149469791 149469960 -93194393 + L2 LINE L2 3128 3294 -19 230 348 146 11 chr1 149470871 149471138 -93193215 + L2 LINE L2 3011 3313 0 441 309 90 11 chr1 149471234 149471422 -93192931 - L3 LINE CR1 -1 1576 1374 2282 96 3 6 chr1 149471560 149471873 -93192480 - AluSx SINE Alu 0 312 1 201 349 188 7 chr1 149477224 149477522 -93186831 - L2 LINE L2 -32 3240 2889 920 243 43 50 chr1 149478145 149478425 -93185928 - MLT2B2 LTR ERVL -18 497 220 688 148 7 26 chr1 149478437 149478592 -93185761 + GA-rich Low_complexity Low_complexity 3 154 0 412 362 6 0 chr1 149478593 149478756 -93185597 + L3 LINE CR1 453 616 -961 2231 98 7 0 chr1 149479119 149479424 -93184929 + AluSg SINE Alu 1 307 -3 355 288 23 8 chr1 149479652 149479784 -93184569 + L3 LINE CR1 1372 1505 -72 586 289 68 5 chr1 149480108 149480298 -93184055 + MIR SINE MIR 49 250 -12 23 0 0 0 chr1 149481719 149481742 -93182611 + GC_rich Low_complexity Low_complexity 1 23 0 219 36 0 0 chr1 149482028 149482056 -93182297 + (CA)n Simple_repeat Simple_repeat 2 29 0 260 211 19 0 chr1 149484623 149484675 -93179678 + MIR SINE MIR 56 108 -154 1779 144 14 0 chr1 149485269 149485561 -93178792 + AluJo SINE Alu 1 296 -16 579 289 95 9 chr1 149485928 149486160 -93178193 - MIR SINE MIR -9 253 2 310 243 0 14 chr1 149487611 149487685 -93176668 - MIR SINE MIR -118 90 18 250 314 145 0 chr1 149488708 149488832 -93175521 + MIR SINE MIR 95 236 -26 519 286 91 48 chr1 149488978 149489209 -93175144 + MIR SINE MIR 2 242 -20 321 212 59 12 chr1 149491924 149492009 -93172344 + MER91C DNA MER1_type 37 125 -15 306 0 0 0 chr1 149497807 149497841 -93166512 + (TC)n Simple_repeat Simple_repeat 2 35 0 188 45 0 0 chr1 149497840 149497862 -93166491 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 283 264 21 97 chr1 149497996 149498140 -93166213 - L2 LINE L2 -3 3269 3137 552 259 123 6 chr1 149498316 149498478 -93165875 - MIR SINE MIR -21 241 61 2260 182 88 31 chr1 149503266 149503744 -93160609 - MLT1D LTR MaLR 0 505 1 253 333 46 56 chr1 149504617 149504833 -93159520 + L3b LINE CR1 1186 1399 -184 274 239 60 43 chr1 149505716 149505833 -93158520 - MIR SINE MIR -39 223 105 466 145 0 0 chr1 149507471 149507547 -93156806 - Alu SINE Alu -1 309 234 2094 80 0 7 chr1 149507547 149507821 -93156532 - AluSp SINE Alu -41 272 1 582 116 0 12 chr1 149507823 149507909 -93156444 - AluJb SINE Alu -179 133 49 445 252 19 58 chr1 149508693 149508848 -93155505 - MIR SINE MIR -78 184 36 377 224 112 35 chr1 149508944 149509060 -93155293 + MIR SINE MIR 126 250 -12 1651 83 0 22 chr1 149509592 149509845 -93154508 - L1PA6 LINE L1 0 6154 5931 1447 132 8 21 chr1 149509859 149510102 -93154251 - L1PA8 LINE L1 0 6172 5933 904 254 155 24 chr1 149510126 149510461 -93153892 + L2 LINE L2 2935 3313 0 215 273 0 0 chr1 149510852 149510909 -93153444 + G-rich Low_complexity Low_complexity 1 57 0 7734 147 6 43 chr1 149611012 149612334 -93052019 - THE1C-int LTR MaLR -305 1275 3 1912 139 55 30 chr1 149612336 149612702 -93051651 - THE1C LTR MaLR 0 375 1 2376 113 0 3 chr1 149612798 149613109 -93051244 + AluSg SINE Alu 1 310 0 671 321 123 37 chr1 149613116 149613619 -93050734 - L2 LINE L2 -1321 1993 1450 1080 316 39 11 chr1 149613639 149614104 -93050249 - MLT1J LTR MaLR -33 478 1 648 283 81 0 chr1 149614105 149614303 -93050050 - L2 LINE L2 -1872 1442 1229 2225 38 0 0 chr1 149614516 149614779 -93049574 + L1PA3 LINE L1 5893 6155 0 293 0 27 0 chr1 149615544 149615581 -93048772 + (TG)n Simple_repeat Simple_repeat 2 39 0 219 322 134 34 chr1 149616525 149616674 -93047679 - MIR3 SINE MIR -18 190 27 651 305 41 20 chr1 149617179 149617523 -93046830 + MLT1K LTR MaLR 213 563 -25 1114 255 17 0 chr1 149618000 149618235 -93046118 + MIR SINE MIR 5 243 -19 241 336 80 8 chr1 149620112 149620237 -93044116 + MER5A DNA MER1_type 16 149 -40 2211 80 0 10 chr1 149620347 149620648 -93043705 - AluY SINE Alu -13 298 1 212 0 36 0 chr1 149620860 149620888 -93043465 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 973 202 134 14 chr1 149620893 149621116 -93043237 - MIR SINE MIR -11 251 2 689 226 31 13 chr1 149621471 149621630 -93042723 + MER5B DNA MER1_type 1 162 -16 307 275 11 0 chr1 149622247 149622338 -93042015 + CT-rich Low_complexity Low_complexity 1 92 0 210 150 0 0 chr1 149623108 149623148 -93041205 + (CA)n Simple_repeat Simple_repeat 2 41 0 586 237 9 0 chr1 149625000 149625114 -93039239 + MER5B DNA MER1_type 64 178 0 2459 161 26 2 chr1 149626005 149626421 -93037932 + MSTB LTR MaLR 1 426 0 3855 150 58 56 chr1 149627411 149628193 -93036160 - LTR39 LTR ERV1 0 783 1 463 290 8 15 chr1 149628210 149628341 -93036012 + MIR SINE MIR 37 166 -96 2133 133 0 13 chr1 149628847 149629163 -93035190 + AluSx SINE Alu 1 312 0 330 358 49 0 chr1 149629562 149629766 -93034587 + L2 LINE L2 2688 2901 -413 * 350 220 18 55 chr1 149629764 149629873 -93034480 - L2 LINE L2 -2 3311 3207 337 330 34 8 chr1 149629918 149630036 -93034317 + L2 LINE L2 2905 3025 -288 455 236 79 36 chr1 149630080 149630220 -93034133 + L2 LINE L2 3168 3313 0 348 24 0 0 chr1 149630658 149630699 -93033654 + (TG)n Simple_repeat Simple_repeat 2 42 0 505 200 9 18 chr1 149630749 149630859 -93033494 - L1ME3A LINE L1 -8 6162 6054 427 209 0 0 chr1 149630871 149630957 -93033396 + L1MC4 LINE L1 7432 7517 -525 * 431 184 10 19 chr1 149630955 149631058 -93033295 - L1ME3 LINE L1 -141 6021 5920 2773 200 103 20 chr1 149631061 149631840 -93032513 - L1MC4 LINE L1 -143 7899 7057 272 324 50 7 chr1 149631850 149631989 -93032364 - L1M4 LINE L1 -1990 4156 4012 189 0 0 0 chr1 149631996 149632017 -93032336 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 359 143 16 0 chr1 149632063 149632126 -93032227 - MER68 LTR ERV1 -498 64 1 332 314 70 27 chr1 149633317 149633502 -93030851 + L1ME4a LINE L1 4877 5069 -1077 211 194 0 0 chr1 149633644 149633680 -93030673 + (TG)n Simple_repeat Simple_repeat 2 37 0 808 286 75 41 chr1 149633736 149634321 -93030032 + L1ME4a LINE L1 5315 5925 -196 204 158 26 0 chr1 149634359 149634397 -93029956 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 925 224 0 0 chr1 149634588 149634753 -93029600 - FRAM SINE Alu -11 165 1 322 264 113 0 chr1 149634965 149635071 -93029282 - L1ME3 LINE L1 -453 5717 5600 758 319 107 17 chr1 149635071 149635611 -93028742 - L1ME3 LINE L1 -1559 4587 3999 6850 107 26 17 chr1 149635871 149636932 -93027421 + MER11C LTR ERVK 1 1071 0 309 306 13 15 chr1 149637416 149637621 -93026732 - L1ME3 LINE L1 -2340 3806 3600 458 349 79 22 chr1 149637660 149637975 -93026378 - HAL1 LINE L1 -1017 1490 1158 180 276 35 0 chr1 149638701 149638759 -93025594 - L2 LINE L2 0 3272 3213 704 130 0 0 chr1 149639159 149639267 -93025086 - AluSg/x SINE Alu -8 302 195 367 231 58 25 chr1 149640160 149640281 -93024072 - MLT1K LTR MaLR -62 526 402 1458 183 57 46 chr1 149640297 149640668 -93023685 - THE1C LTR MaLR 0 375 1 896 110 24 18 chr1 149640668 149640832 -93023521 - THE1C-int LTR MaLR 0 1580 1416 2376 172 38 2 chr1 149641639 149642087 -93022266 - L1MC1 LINE L1 -16 6317 5854 227 266 16 0 chr1 149642616 149642680 -93021673 + CT-rich Low_complexity Low_complexity 2 66 0 668 233 107 6 chr1 149643033 149643192 -93021161 + MER45A DNA AcHobo 4 178 0 254 300 91 28 chr1 149643344 149643606 -93020747 + L2 LINE L2 2767 3041 -231 284 200 0 0 chr1 149646919 149646969 -93017384 - Charlie3 DNA MER1_type -2660 50 1 734 203 51 19 chr1 149647096 149647254 -93017099 - FAM SINE Alu -9 40 1 182 176 0 0 chr1 149647376 149647410 -93016943 + MIR SINE MIR 203 236 -26 * 276 200 91 0 chr1 149647382 149647437 -93016916 + L2 LINE L2 3213 3272 0 1516 127 13 4 chr1 149649741 149649969 -93014384 - MER30 DNA MER1_type 0 230 1 511 345 125 13 chr1 149650325 149650629 -93013724 - L2 LINE L2 0 3272 2935 1891 9 0 0 chr1 149650639 149650853 -93013500 + L1PA2 LINE L1 5940 6153 -2 300 319 88 49 chr1 149651408 149651612 -93012741 - L2 LINE L2 -552 2762 2551 2346 61 0 51 chr1 149653100 149653413 -93010940 - AluY SINE Alu -14 297 1 1683 212 144 12 chr1 149653541 149653952 -93010401 - MLT1D LTR MaLR -6 499 35 399 323 205 0 chr1 149654038 149654199 -93010154 - MER91A DNA MER1_type -2 194 1 246 186 0 0 chr1 149654694 149654737 -93009616 + MER3 DNA MER1_type 1 43 -166 796 50 0 0 chr1 149654742 149654842 -93009511 - L1PA5 LINE L1 -1 6153 6054 365 19 0 0 chr1 149654842 149654894 -93009459 + L1PA4 LINE L1 5991 6042 -113 806 182 53 0 chr1 149654894 149655064 -93009289 + MER3 DNA MER1_type 30 208 -1 2376 61 0 35 chr1 149655444 149655807 -93008546 + AluY SINE Alu 1 352 0 185 209 11 33 chr1 149656065 149656156 -93008197 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 210 410 16 8 chr1 149656242 149656364 -93007989 - L2 LINE L2 -213 3059 2937 2100 251 49 20 chr1 149656801 149657511 -93006842 - MER20B DNA MER1_type 0 783 53 912 174 28 0 chr1 149657517 149657661 -93006692 + AluJb SINE Alu 116 263 -49 24964 35 1 0 chr1 149657762 149661706 -93002647 + L1PA3 LINE L1 2207 6152 -3 2358 239 104 26 chr1 149661715 149663402 -93000951 - L1MC/D LINE L1 -746 5818 4374 * 3188 236 50 29 chr1 149663370 149664520 -92999833 - L1MC/D LINE L1 -2515 4049 2876 890 228 19 0 chr1 149664531 149664737 -92999616 + L1MCa LINE L1 927 1136 -5290 * 2048 197 51 21 chr1 149664734 149665206 -92999147 - L1MC/D LINE L1 -4939 1106 621 1416 159 0 5 chr1 149665208 149665428 -92998925 - AluSg/x SINE Alu -9 303 85 588 194 0 60 chr1 149665444 149665578 -92998775 - L1MC/D LINE L1 -5421 624 499 1023 203 87 49 chr1 149665784 149666249 -92998104 + MLT1F1 LTR MaLR 5 524 -43 246 32 0 0 chr1 149666336 149666367 -92997986 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr1 149666399 149666428 -92997925 + AT_rich Low_complexity Low_complexity 1 29 0 498 223 58 16 chr1 149666855 149666976 -92997377 - L2 LINE L2 0 3313 3188 271 299 73 30 chr1 149667546 149667710 -92996643 - LTR67 LTR ERVL -8 549 379 207 0 0 0 chr1 149667890 149667913 -92996440 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 326 232 68 111 chr1 149668041 149668231 -92996122 + MLT1L LTR MaLR 204 385 -230 252 239 0 30 chr1 149668417 149668484 -92995869 + CT-rich Low_complexity Low_complexity 2 66 0 263 153 24 82 chr1 149668758 149668843 -92995510 + MER116 DNA Mariner 1 80 0 517 224 17 35 chr1 149669868 149669984 -92994369 + L2 LINE L2 3200 3313 0 254 323 112 12 chr1 149670666 149670827 -92993526 - MLT1I LTR MaLR -1 408 232 1894 147 55 33 chr1 149671142 149671509 -92992844 + THE1C LTR MaLR 1 375 0 276 386 7 7 chr1 149674173 149674326 -92990027 - L3 LINE CR1 -759 818 666 2885 86 0 0 chr1 149674337 149674723 -92989630 - L1PA7 LINE L1 0 6154 5769 448 284 32 67 chr1 149675235 149675487 -92988866 - HAL1 LINE L1 -6 2501 2258 1531 153 4 12 chr1 149675487 149675782 -92988571 + AluSx SINE Alu 38 330 0 448 284 32 67 chr1 149675782 149675813 -92988540 - HAL1 LINE L1 -249 2258 2227 1571 282 103 43 chr1 149676102 149677358 -92986995 - HAL1 LINE L1 -355 2152 822 26 0 0 0 chr1 149678189 149678215 -92986138 + AT_rich Low_complexity Low_complexity 1 26 0 474 311 81 33 chr1 149678216 149678616 -92985737 - L1MC4a LINE L1 -296 5868 5503 2153 217 174 6 chr1 149678628 149679301 -92985052 - LTR50 LTR ERVL -7 788 3 376 289 39 64 chr1 149679311 149679515 -92984838 - L1MC4a LINE L1 -2317 5491 5293 520 305 59 44 chr1 149679538 149680016 -92984337 - L1MC4a LINE L1 -906 5240 4756 332 322 83 35 chr1 149680028 149680258 -92984095 - L1MC4a LINE L1 -1440 4706 4466 880 53 0 9 chr1 149680359 149680473 -92983880 + MER4E LTR ERV1 653 765 -1 850 134 7 49 chr1 149680475 149680617 -92983736 + MER4E-int LTR ERV1 2 137 -6621 396 132 59 0 chr1 149680615 149680683 -92983670 + MER4E-int LTR ERV1 2505 2576 -4182 * 7805 140 66 17 chr1 149680693 149681020 -92983333 + MER4E-int LTR ERV1 4452 4761 -1997 2016 129 3 7 chr1 149681020 149681346 -92983007 + AluSq SINE Alu 1 313 0 7805 140 66 17 chr1 149681346 149682703 -92981650 + MER4E-int LTR ERV1 4761 6310 -448 531 69 0 0 chr1 149682704 149682776 -92981577 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 1608 151 22 4 chr1 149682778 149683050 -92981303 + MER4E-int LTR ERV1 6369 6645 -113 5310 62 29 25 chr1 149683885 149684433 -92979920 + MER4E LTR ERV1 1 545 -221 2282 98 3 3 chr1 149684433 149684738 -92979615 - AluSg SINE Alu -5 305 1 5310 62 29 25 chr1 149684738 149684935 -92979418 + MER4E LTR ERV1 545 740 -26 273 224 17 0 chr1 149685362 149685420 -92978933 + Charlie2 DNA MER1_type 4 62 -2720 2503 201 121 26 chr1 149685477 149686037 -92978316 + Charlie2 DNA MER1_type 1856 2524 -338 2301 108 0 0 chr1 149686037 149686343 -92978010 - AluSq SINE Alu -7 306 1 2503 201 121 26 chr1 149686343 149686628 -92977725 + Charlie2 DNA MER1_type 2524 2781 -81 7081 189 22 8 chr1 149686650 149688427 -92975926 + L1MA4 LINE L1 2 1800 -4074 2361 136 57 30 chr1 149688479 149688996 -92975357 + MLT2A2 LTR ERVL 1 554 0 7408 201 21 14 chr1 149688996 149690990 -92973363 + L1MA4 LINE L1 1855 3867 -2461 225 0 0 0 chr1 149690990 149691015 -92973338 + (CA)n Simple_repeat Simple_repeat 2 26 0 7408 201 21 14 chr1 149691015 149691095 -92973258 + L1MA4 LINE L1 3867 3945 -2383 3150 155 23 67 chr1 149691096 149691170 -92973183 + L1MA4 LINE L1 5784 5860 -622 1624 146 68 52 chr1 149691170 149691539 -92972814 - THE1C LTR MaLR 0 375 1 3150 155 23 67 chr1 149691539 149692195 -92972158 + L1MA4 LINE L1 5860 6482 0 2324 103 7 0 chr1 149694233 149694543 -92969810 + AluSx SINE Alu 1 312 0 785 292 95 35 chr1 149694600 149695230 -92969123 - L1M4 LINE L1 -775 5371 4704 1325 321 114 38 chr1 149695331 149696046 -92968307 - L1M4 LINE L1 -1834 4312 3653 2149 121 3 0 chr1 149696046 149696343 -92968010 + AluSx SINE Alu 1 298 -14 1325 321 114 38 chr1 149696343 149696926 -92967427 - L1M4 LINE L1 -2493 3653 2915 882 144 66 0 chr1 149696938 149697105 -92967248 - L1MA8 LINE L1 -1 6290 6113 775 96 9 0 chr1 149697106 149697221 -92967132 + L1MA8 LINE L1 6017 6132 -159 245 295 9 34 chr1 149697242 149697360 -92966993 - L1M4 LINE L1 -3309 2837 2722 23 33 0 0 chr1 149697439 149697469 -92966884 + AT_rich Low_complexity Low_complexity 1 30 0 30 77 0 0 chr1 149697638 149697703 -92966650 + AT_rich Low_complexity Low_complexity 1 65 0 321 308 59 21 chr1 149697706 149697992 -92966361 - L1M4 LINE L1 -3736 2410 2114 485 286 32 18 chr1 149698333 149698553 -92965800 + L1M4 LINE L1 14 236 -6306 362 0 0 0 chr1 149698621 149698666 -92965687 + L1PA3 LINE L1 6108 6152 -3 1014 240 29 29 chr1 149698905 149699289 -92965064 + L1M4 LINE L1 1201 1584 -4958 235 176 27 27 chr1 149699297 149699371 -92964982 + (TATAA)n Simple_repeat Simple_repeat 1 74 0 210 191 0 0 chr1 149699953 149699995 -92964358 + (TA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr1 149700945 149700969 -92963384 + AT_rich Low_complexity Low_complexity 1 24 0 2028 109 3 46 chr1 149700977 149701279 -92963074 + AluSp SINE Alu 1 289 -24 266 0 29 0 chr1 149701419 149701453 -92962900 + (CA)n Simple_repeat Simple_repeat 1 35 0 43 56 0 0 chr1 149701539 149701610 -92962743 + AT_rich Low_complexity Low_complexity 1 71 0 504 247 126 17 chr1 149701721 149701895 -92962458 + MIR SINE MIR 70 262 0 184 266 18 119 chr1 149702135 149702244 -92962109 - L2 LINE L2 -222 3050 2953 2111 162 35 0 chr1 149702266 149702643 -92961710 + MLT1B LTR MaLR 1 390 0 432 282 113 51 chr1 149703128 149703471 -92960882 - L1ME LINE L1 -414 5748 5382 364 282 106 82 chr1 149703483 149703887 -92960466 - L1ME LINE L1 -802 5344 4931 230 279 49 44 chr1 149704000 149704204 -92960149 - L1ME LINE L1 -1357 4789 4585 23 0 0 0 chr1 149706406 149706429 -92957924 + AT_rich Low_complexity Low_complexity 1 23 0 22 88 0 0 chr1 149706474 149706531 -92957822 + AT_rich Low_complexity Low_complexity 1 57 0 393 86 0 0 chr1 149706541 149706599 -92957754 + (CA)n Simple_repeat Simple_repeat 1 58 0 557 327 43 0 chr1 149706659 149706867 -92957486 - HERVL LTR ERVL -1116 4538 4322 466 242 93 39 chr1 149706913 149707095 -92957258 - HERVL LTR ERVL -1524 4240 4049 2071 125 0 13 chr1 149707191 149707496 -92956857 - AluSg SINE Alu -9 301 1 361 309 7 36 chr1 149707529 149707567 -92956786 - HERVL LTR ERVL -2929 2835 2797 3596 137 25 3 chr1 149707567 149708157 -92956196 + LTR26 LTR ERV1 1 603 0 361 309 7 36 chr1 149708157 149708257 -92956096 - HERVL LTR ERVL -2967 2797 2701 508 248 156 25 chr1 149708320 149708558 -92955795 + L1ME3A LINE L1 5682 5950 -220 457 77 11 55 chr1 149708753 149708844 -92955509 + (TCCCC)n Simple_repeat Simple_repeat 1 87 0 2043 117 13 7 chr1 149708851 149709160 -92955193 - AluY SINE Alu 0 311 1 502 147 7 49 chr1 149709162 149709305 -92955048 + CT-rich Low_complexity Low_complexity 2 138 0 387 312 16 0 chr1 149709444 149709569 -92954784 - HAL1 LINE L1 -821 1686 1560 461 368 80 3 chr1 149710138 149710437 -92953916 + L1MC/D LINE L1 242 563 -5556 493 297 74 81 chr1 149711273 149711826 -92952527 + HAL1b LINE L1 368 916 -432 1007 312 106 44 chr1 149712185 149713229 -92951124 + L1MC/D LINE L1 2119 3227 -2902 1021 219 27 50 chr1 149713265 149713562 -92950791 - MLT2C1 LTR ERVL -72 325 36 444 304 97 85 chr1 149713584 149713906 -92950447 + L1MC/D LINE L1 3239 3573 -2556 656 212 85 0 chr1 149713906 149714095 -92950258 + MER3 DNA MER1_type 5 209 0 444 304 97 85 chr1 149714095 149714383 -92949970 + L1MC/D LINE L1 3573 3856 -2273 1254 231 90 13 chr1 149714384 149714730 -92949623 - MLT1A2 LTR MaLR 0 374 1 302 230 0 11 chr1 149714816 149714903 -92949450 + GA-rich Low_complexity Low_complexity 1 86 0 468 332 115 29 chr1 149714921 149715340 -92949013 + L1MC/D LINE L1 4217 4671 -1458 465 298 144 47 chr1 149715354 149715820 -92948533 + L1MC/D LINE L1 4728 5238 -891 785 258 30 11 chr1 149715856 149716123 -92948230 + L1MC/D LINE L1 5270 5541 -2250 21 0 0 0 chr1 149716393 149716414 -92947939 + AT_rich Low_complexity Low_complexity 1 21 0 257 259 153 0 chr1 149716762 149716847 -92947506 - L2 LINE L2 -12 3301 3204 24 32 0 0 chr1 149717426 149717457 -92946896 + AT_rich Low_complexity Low_complexity 1 31 0 209 286 0 65 chr1 149717673 149717750 -92946603 - MIR SINE MIR -4 258 187 626 135 48 16 chr1 149717786 149717912 -92946441 - MER65A LTR ERV1 0 445 316 5256 21 0 0 chr1 149718004 149718609 -92945744 + L1PA3 LINE L1 5551 6155 0 1696 136 57 13 chr1 149718767 149718920 -92945433 - MER65A LTR ERV1 -115 330 185 252 0 0 0 chr1 149718920 149718948 -92945405 + (TG)n Simple_repeat Simple_repeat 1 28 0 1696 136 57 13 chr1 149718948 149719110 -92945243 - MER65A LTR ERV1 -260 185 1 2295 270 35 19 chr1 149719110 149719980 -92944373 - L1ME3A LINE L1 -28 6142 5259 814 244 58 0 chr1 149720000 149720274 -92944079 + L1M4 LINE L1 4561 4850 -1296 1080 282 28 2 chr1 149720276 149720709 -92943644 + L1M4 LINE L1 4788 5231 -915 377 249 276 5 chr1 149720725 149720910 -92943443 + LTR33A LTR ERVL 76 310 -213 1705 144 163 21 chr1 149721159 149721534 -92942819 + MSTA LTR MaLR 1 428 0 554 303 77 19 chr1 149721538 149721799 -92942554 + LTR16C LTR ERVL 193 468 -23 542 239 43 0 chr1 149721847 149722010 -92942343 + LTR33A LTR ERVL 328 497 -26 365 189 14 0 chr1 149722503 149722577 -92941776 + MIR SINE MIR 177 251 -11 181 359 16 0 chr1 149722586 149722650 -92941703 + L2 LINE L2 2224 2288 -1026 208 147 0 0 chr1 149722890 149722924 -92941429 + (TAA)n Simple_repeat Simple_repeat 1 34 0 218 252 52 78 chr1 149723195 149723310 -92941043 + MIR SINE MIR 37 148 -114 2009 153 14 28 chr1 149723691 149724051 -92940302 - THE1A LTR MaLR 0 355 1 180 267 67 0 chr1 149724790 149724850 -92939503 + L3b LINE CR1 1441 1504 -79 717 275 55 50 chr1 149725186 149725586 -92938767 + MER93a LTR ERV1 1 402 0 663 230 36 18 chr1 149726671 149726836 -92937517 + MER45A DNA AcHobo 10 177 -1 328 244 70 58 chr1 149727179 149727351 -92937002 - HAL1 LINE L1 0 2507 2334 28 0 0 0 chr1 149727357 149727385 -92936968 + AT_rich Low_complexity Low_complexity 1 28 0 7516 31 0 0 chr1 149727385 149728809 -92935544 - L1PA4 LINE L1 -11 6144 4722 216 0 0 0 chr1 149729036 149729060 -92935293 + (T)n Simple_repeat Simple_repeat 1 24 0 242 287 11 0 chr1 149729098 149729185 -92935168 + L1MC/D LINE L1 5655 5742 -2066 28918 118 12 64 chr1 149729669 149736161 -92928192 - L1PA7 LINE L1 0 6154 12 1174 252 29 3 chr1 149738187 149738493 -92925860 - LTR53 LTR ERVL 0 519 206 2190 105 44 41 chr1 149738960 149739323 -92925030 + THE1B LTR MaLR 1 364 0 216 0 0 0 chr1 149739938 149739962 -92924391 + (TGG)n Simple_repeat Simple_repeat 3 26 0 1258 355 91 21 chr1 149740266 149741154 -92923199 + L2 LINE L2 2026 2975 -339 253 361 105 26 chr1 149741214 149741480 -92922873 + L2 LINE L2 3008 3294 -19 239 205 130 93 chr1 149741608 149741769 -92922584 + MIR SINE MIR 62 228 -34 234 247 225 0 chr1 149741695 149741784 -92922569 - MIR SINE MIR -101 161 53 * 279 324 104 45 chr1 149742064 149742312 -92922041 - L2 LINE L2 -19 3294 2990 230 93 0 23 chr1 149742318 149742361 -92921992 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 41529 44 2 2 chr1 149742361 149748480 -92915873 - L1PA3 LINE L1 -24 6131 13 239 277 5 158 chr1 149748584 149748786 -92915567 + MIR SINE MIR 59 229 -33 1099 197 34 124 chr1 149749643 149749763 -92914590 + MLT1A2 LTR MaLR 1 130 -244 2474 144 39 0 chr1 149749763 149750173 -92914180 - MSTA LTR MaLR 0 428 3 1099 197 34 124 chr1 149750173 149750463 -92913890 + MLT1A2 LTR MaLR 130 374 0 180 175 18 140 chr1 149750500 149750557 -92913796 + L2 LINE L2 3255 3304 -9 * 251 353 101 0 chr1 149750547 149750666 -92913687 - L2 LINE L2 -19 3294 3164 21 0 0 0 chr1 149752535 149752556 -92911797 + AT_rich Low_complexity Low_complexity 1 21 0 781 215 0 6 chr1 149755325 149755502 -92908851 - MER3 DNA MER1_type -80 129 1 309 26 0 0 chr1 149755615 149755653 -92908700 + (TG)n Simple_repeat Simple_repeat 1 38 0 221 316 52 52 chr1 149755843 149755979 -92908374 - L2 LINE L2 -1354 1960 1825 297 109 0 0 chr1 149757281 149757327 -92907026 + (TC)n Simple_repeat Simple_repeat 2 47 0 234 174 0 0 chr1 149757879 149757925 -92906428 + CT-rich Low_complexity Low_complexity 3 48 0 261 305 9 48 chr1 149758882 149758987 -92905366 - MIR SINE MIR 0 262 162 2524 124 5 0 chr1 149760066 149760437 -92903916 - THE1C LTR MaLR -2 373 1 436 268 39 39 chr1 149761261 149761388 -92902965 + L2 LINE L2 3187 3313 0 2447 179 20 5 chr1 149761678 149762124 -92902229 - MSTB2 LTR MaLR 0 457 5 183 359 48 10 chr1 149762687 149762790 -92901563 - L2 LINE L2 -478 2836 2730 210 226 132 0 chr1 149765206 149765259 -92899094 - L2 LINE L2 -17 3255 3196 429 204 0 37 chr1 149765956 149766064 -92898289 + L1PB4 LINE L1 6053 6156 0 644 249 38 32 chr1 149766155 149766340 -92898013 + MIR SINE MIR 41 226 -36 311 347 92 42 chr1 149768100 149768524 -92895829 - L2 LINE L2 -1060 2254 1810 33 0 0 0 chr1 149769166 149769199 -92895154 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr1 149769861 149769892 -92894461 + AT_rich Low_complexity Low_complexity 1 31 0 699 93 203 0 chr1 149769893 149770011 -92894342 - L1MA1 LINE L1 -4 6298 6157 307 250 92 67 chr1 149772764 149772884 -92891469 - L1M4b LINE L1 -6720 139 17 205 363 22 11 chr1 149773169 149773260 -92891093 - L2 LINE L2 -227 3045 2954 212 298 0 0 chr1 149773683 149773730 -92890623 - L2 LINE L2 -253 3060 3014 2642 52 0 0 chr1 149774094 149774399 -92889954 - AluY SINE Alu -6 305 1 47 61 0 0 chr1 149774537 149774619 -92889734 + AT_rich Low_complexity Low_complexity 1 82 0 271 279 108 64 chr1 149774663 149774867 -92889486 - MLT1J2 LTR MaLR -125 325 113 658 258 55 39 chr1 149775819 149776075 -92888278 + MIR SINE MIR 3 262 0 2787 157 64 5 chr1 149776257 149776347 -92888006 - L1MC2 LINE L1 -8 6336 6253 2232 121 3 0 chr1 149776347 149776653 -92887700 - AluSc SINE Alu -2 307 1 2787 157 64 5 chr1 149776653 149777122 -92887231 - L1MC2 LINE L1 -91 6253 5744 42081 43 0 2 chr1 149777127 149782712 -92881641 + L1P1 LINE L1 6 5582 -573 267 386 7 7 chr1 149784040 149784193 -92880160 - L3 LINE CR1 -759 818 666 3732 74 0 19 chr1 149784204 149784586 -92879767 - L1PA7 LINE L1 0 6154 5783 2780 16 0 6 chr1 149784586 149784899 -92879454 - AluYa5 SINE Alu 0 311 1 3732 74 0 19 chr1 149784899 149785028 -92879325 - L1PA7 LINE L1 -371 5783 5653 221 278 0 0 chr1 149785058 149785112 -92879241 - L2 LINE L2 0 3272 3219 195 129 0 0 chr1 149785343 149785374 -92878979 + (T)n Simple_repeat Simple_repeat 1 31 0 503 291 86 37 chr1 149785901 149786145 -92878208 + MIR SINE MIR 6 261 -1 205 286 36 24 chr1 149786250 149786334 -92878019 + L2 LINE L2 3183 3267 -5 1344 178 46 14 chr1 149786465 149787100 -92877253 - L1MB1 LINE L1 -5 6163 5400 469 210 57 19 chr1 149787098 149787255 -92877098 + L1MC4 LINE L1 6919 7081 -961 * 1572 273 66 3 chr1 149787271 149787876 -92876477 + L1MC4 LINE L1 7254 7896 -146 787 219 100 0 chr1 149788390 149788600 -92875753 + L1MC4 LINE L1 7798 8028 -14 7981 118 7 16 chr1 149789444 149790977 -92873376 - L1PA10 LINE L1 -5 6163 4661 2194 107 0 36 chr1 149790977 149791286 -92873067 - AluY SINE Alu -13 298 1 7981 118 7 16 chr1 149791286 149791839 -92872514 - L1PA10 LINE L1 -1507 4661 4104 526 250 58 0 chr1 149793117 149793273 -92871080 - MIR SINE MIR -44 218 54 522 325 36 0 chr1 149793976 149794170 -92870183 + MER63A DNA MER1_type 1 201 -9 285 357 116 8 chr1 149794685 149794814 -92869539 - MIR3 SINE MIR -35 173 31 275 211 0 13 chr1 149794929 149795005 -92869348 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 2597 216 80 32 chr1 149795025 149795890 -92868463 - L1ME2 LINE L1 -51 6113 5203 1972 165 10 0 chr1 149795890 149796199 -92868154 - AluSx SINE Alu 0 312 1 2597 216 80 32 chr1 149796199 149796257 -92868096 - L1ME2 LINE L1 -961 5203 5149 23219 52 4 1 chr1 149796279 149802308 -92862045 - L1PA4 LINE L1 -3 6152 7 1137 261 113 0 chr1 149802315 149802440 -92861913 - L1ME2 LINE L1 -1035 5111 5001 288 0 0 0 chr1 149802440 149802472 -92861881 + (TG)n Simple_repeat Simple_repeat 1 32 0 1137 261 113 0 chr1 149802472 149802771 -92861582 - L1ME2 LINE L1 -1145 5001 4639 184 315 147 26 chr1 149803207 149803547 -92860806 - L2 LINE L2 -1216 2098 1718 24 67 0 0 chr1 149807518 149807563 -92856790 + AT_rich Low_complexity Low_complexity 1 45 0 1433 12 0 0 chr1 149807563 149807733 -92856620 - L1HS LINE L1 -1 6154 5985 230 293 57 38 chr1 149807940 149808046 -92856307 - L2 LINE L2 -34 3279 3172 287 218 23 58 chr1 149808287 149808374 -92855979 + L2 LINE L2 3227 3310 -3 226 283 17 0 chr1 149809120 149809180 -92855173 + (TG)n Simple_repeat Simple_repeat 1 61 0 190 282 105 48 chr1 149809313 149809437 -92854916 - MIR SINE MIR -65 197 67 325 159 0 14 chr1 149809712 149809781 -92854572 - MER65A LTR ERV1 -377 68 1 1926 288 34 20 chr1 149809781 149810582 -92853771 - L1ME3A LINE L1 -28 6142 5331 300 315 58 17 chr1 149810977 149811218 -92853135 + L1ME LINE L1 1144 1394 -5240 * 627 267 65 1 chr1 149811212 149811532 -92852821 + L1ME LINE L1 1313 1653 -4892 13439 140 5 3 chr1 150011546 150013537 -92650816 - HUERS-P3 LTR ERV1 -3780 5139 3146 184 240 10 120 chr1 150013929 150014029 -92650324 - MIR SINE MIR -42 220 132 27 0 0 0 chr1 150014029 150014056 -92650297 + AT_rich Low_complexity Low_complexity 1 27 0 256 177 16 32 chr1 150014069 150014131 -92650222 - AluSc SINE Alu -165 134 74 275 303 51 20 chr1 150014156 150014351 -92650002 - L1ME LINE L1 -392 5729 5529 185 262 48 0 chr1 150014545 150014587 -92649766 - L3b LINE CR1 -263 1320 1277 2421 42 19 10 chr1 150014700 150015007 -92649346 - AluY SINE Alu -1 310 1 288 70 0 0 chr1 150016979 150017029 -92647324 + (TG)n Simple_repeat Simple_repeat 1 93 0 288 70 0 0 chr1 150017029 150017072 -92647281 + (TG)n Simple_repeat Simple_repeat 1 43 0 237 65 0 0 chr1 150017715 150017746 -92646607 + (GA)n Simple_repeat Simple_repeat 1 31 0 541 108 0 0 chr1 150018125 150018199 -92646154 - tRNA-Gly-GGC tRNA tRNA 0 74 1 4798 120 19 78 chr1 150018470 150019343 -92645010 - LTR12 LTR ERV1 0 826 5 4334 135 56 10 chr1 150019349 150020502 -92643851 - HERV17 LTR ERV1 0 8399 504 385 145 0 0 chr1 150020498 150020560 -92643793 - HERV17 LTR ERV1 -835 7564 7503 * 571 161 57 31 chr1 150020558 150020750 -92643603 - HERV17 LTR ERV1 -7726 900 704 29048 107 20 10 chr1 150020750 150025556 -92638797 - HERV17 LTR ERV1 -3419 4980 40 1516 182 7 28 chr1 150025525 150025955 -92638398 - pTR5 LTR ERV1 -237 477 173 * 519 17 0 0 chr1 150026285 150026345 -92638008 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 602 84 0 0 chr1 150027584 150027667 -92636686 - tRNA-Leu-CTG tRNA tRNA -3 83 1 428 40 0 0 chr1 150028058 150028108 -92636245 - HERVK14 LTR ERVK -61 5884 5835 377 170 0 18 chr1 150028108 150028183 -92636170 - MER41C LTR ERV1 -493 61 1 1427 72 22 0 chr1 150028183 150028364 -92635989 - HERVK14 LTR ERVK -186 5759 5575 1392 129 19 5 chr1 150028364 150028392 -92635961 - MER41C-int LTR ERV1 0 7756 7545 2606 124 32 35 chr1 150028394 150028915 -92635438 - HERVK14 LTR ERVK -366 5579 2995 * 4683 205 62 2 chr1 150028914 150029847 -92634506 - HERVK14 LTR ERVK -4934 2309 1321 420 264 0 0 chr1 150029835 150029922 -92634431 - HERVK14 LTR ERVK -6563 680 594 * 696 200 82 91 chr1 150029996 150030216 -92634137 - HERVK14 LTR ERVK -6971 272 55 648 221 20 0 chr1 150030393 150030542 -92633811 + L1MA4A LINE L1 6120 6271 -32 204 163 0 0 chr1 150030886 150030929 -92633424 + (TGG)n Simple_repeat Simple_repeat 3 45 0 1327 212 25 102 chr1 150030947 150031628 -92632725 + LTR9 LTR ERV1 1 779 0 6674 155 10 14 chr1 150031628 150034062 -92630291 + HUERS-P3 LTR ERV1 1 2742 -5671 302 235 0 0 chr1 150034389 150034457 -92629896 - LTR60 LTR ERV1 -518 68 1 331 294 111 17 chr1 150034458 150034638 -92629715 + L1ME LINE L1 5555 5751 -370 1436 239 47 108 chr1 150034731 150035308 -92629045 + MLT1F LTR MaLR 1 542 0 1786 195 113 25 chr1 150035522 150035922 -92628431 + MLT1C LTR MaLR 33 467 0 239 71 0 0 chr1 150035922 150035959 -92628394 + Charlie5 DNA MER1_type 2460 2496 -116 864 20 0 0 chr1 150036237 150036339 -92628014 - AluY SINE Alu -12 299 198 28 0 0 0 chr1 150036485 150036513 -92627840 + AT_rich Low_complexity Low_complexity 1 28 0 315 235 0 15 chr1 150037231 150037299 -92627054 + MIR3 SINE MIR 90 156 -52 1292 164 41 31 chr1 150037988 150038305 -92626048 - MER33 DNA MER1_type 0 324 5 503 291 122 12 chr1 150038546 150038718 -92625635 + L2 LINE L2 8 198 -3116 468 238 138 25 chr1 150038719 150038879 -92625474 + MLT1H LTR MaLR 372 549 0 1542 250 109 30 chr1 150038880 150038954 -92625399 + L2 LINE L2 2438 2505 -808 1803 164 0 6 chr1 150038954 150039265 -92625088 - AluJo SINE Alu -1 311 3 1542 250 109 30 chr1 150039265 150040007 -92624346 + L2 LINE L2 2505 3312 -1 468 175 0 0 chr1 150040860 150040957 -92623396 + (CA)n Simple_repeat Simple_repeat 2 98 0 2380 31 21 3 chr1 150041419 150041709 -92622644 - AluY SINE Alu -16 295 1 27 29 0 0 chr1 150042707 150042741 -92621612 + AT_rich Low_complexity Low_complexity 1 34 0 231 152 0 0 chr1 150042989 150043022 -92621331 + Alu SINE Alu 2 34 -268 204 40 0 0 chr1 150043123 150043148 -92621205 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 845 185 0 0 chr1 150043376 150043522 -92620831 + FRAM SINE Alu 1 146 -30 4862 164 51 56 chr1 150043850 150044926 -92619427 + MER11C LTR ERVK 1 1071 0 1988 110 7 10 chr1 150045377 150045685 -92618668 + AluSx SINE Alu 1 307 -5 1161 121 0 16 chr1 150045685 150045867 -92618486 + AluSg/x SINE Alu 134 312 0 282 246 33 16 chr1 150045895 150046017 -92618336 + (TA)n Simple_repeat Simple_repeat 2 125 0 2210 64 0 20 chr1 150046176 150046453 -92617900 - L1PA5 LINE L1 -197 5957 5685 1342 61 10 45 chr1 150046453 150046651 -92617702 + L1PA5 LINE L1 5964 6154 0 2210 64 0 20 chr1 150046651 150046669 -92617684 - L1PA5 LINE L1 -469 5685 5668 25 0 0 0 chr1 150046769 150046794 -92617559 + AT_rich Low_complexity Low_complexity 1 25 0 495 110 0 0 chr1 150047399 150047472 -92616881 + tRNA-Asn-AAC tRNA tRNA 1 73 -4 330 298 66 8 chr1 150048414 150048535 -92615818 + L2 LINE L2 3138 3265 -7 244 354 0 13 chr1 150048942 150049021 -92615332 - L3 LINE CR1 -1078 499 422 491 228 16 0 chr1 150050730 150050857 -92613496 - L1MC4 LINE L1 0 8042 7914 538 189 70 103 chr1 150051186 150051371 -92612982 + MIR SINE MIR 84 262 0 338 308 87 0 chr1 150051372 150051476 -92612877 - MIR SINE MIR -69 139 27 259 238 0 12 chr1 150052891 150052971 -92611382 + L1ME4a LINE L1 5815 5893 -228 276 250 78 17 chr1 150052992 150053108 -92611245 + L1ME4a LINE L1 5957 6079 -42 253 315 114 38 chr1 150053473 150053657 -92610696 - L2 LINE L2 -4 3309 3112 2083 129 0 0 chr1 150053717 150054027 -92610326 + AluY SINE Alu 1 310 -1 1978 134 0 10 chr1 150054871 150055185 -92609168 + AluSx SINE Alu 1 311 -1 435 286 93 25 chr1 150056465 150056626 -92607727 - MIR3 SINE MIR -7 201 30 1549 147 11 36 chr1 150058750 150059029 -92605324 + AluJo SINE Alu 11 282 -30 284 233 17 0 chr1 150059112 150059172 -92605181 + CT-rich Low_complexity Low_complexity 5 65 0 246 299 28 47 chr1 150059421 150059528 -92604825 - L2 LINE L2 -296 2976 2872 363 269 134 0 chr1 150059630 150059749 -92604604 + MIR SINE MIR 95 229 -33 451 358 82 19 chr1 150059790 150059997 -92604356 + L2 LINE L2 3040 3259 -13 * 906 365 40 19 chr1 150059995 150060575 -92603778 - L2 LINE L2 -501 2813 2222 272 314 122 27 chr1 150060780 150061108 -92603245 - L2 LINE L2 -1135 2179 1821 1948 117 89 94 chr1 150061332 150061579 -92602774 + MLT1B LTR MaLR 1 247 -143 1263 128 5 15 chr1 150061579 150061783 -92602570 + L1PA13 LINE L1 5951 6152 -11 1948 117 89 94 chr1 150061783 150061927 -92602426 + MLT1B LTR MaLR 247 390 0 5064 89 0 6 chr1 150062208 150062869 -92601484 - LTR8 LTR ERV1 -34 657 1 340 311 92 86 chr1 150062876 150063420 -92600933 - L2 LINE L2 -1600 1714 1168 3926 187 66 24 chr1 150063700 150063746 -92600607 - MER21B LTR ERV1 -52 811 768 180 0 0 0 chr1 150063746 150063766 -92600587 + (CAAG)n Simple_repeat Simple_repeat 4 23 0 3926 187 66 24 chr1 150063766 150063801 -92600552 - MER21B LTR ERV1 -95 768 736 3429 126 19 13 chr1 150063801 150064325 -92600028 - MER1A DNA MER1_type 0 527 1 3926 187 66 24 chr1 150064325 150064996 -92599357 - MER21B LTR ERV1 -127 736 26 2186 191 36 28 chr1 150064996 150065466 -92598887 + LTR62 LTR ERVK 1 474 -245 606 255 48 7 chr1 150065586 150065731 -92598622 - MLT1G LTR MaLR -427 163 13 257 194 45 0 chr1 150066234 150066301 -92598052 + MLT1L LTR MaLR 128 197 -418 270 290 121 11 chr1 150066444 150066641 -92597712 + MLT1L LTR MaLR 363 606 -1 261 284 104 52 chr1 150066756 150066890 -92597463 + MIR3 SINE MIR 43 183 -25 2352 98 0 0 chr1 150067011 150067308 -92597045 - AluSx SINE Alu -15 297 1 565 200 0 19 chr1 150067350 150067455 -92596898 - FLAM_A SINE Alu -16 126 24 23 0 0 0 chr1 150067532 150067555 -92596798 + AT_rich Low_complexity Low_complexity 1 23 0 1717 164 4 0 chr1 150067565 150067859 -92596494 + AluJb SINE Alu 7 301 0 180 0 0 0 chr1 150068036 150068056 -92596297 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 357 315 114 0 chr1 150068517 150068666 -92595687 + MIR3 SINE MIR 36 201 -7 254 0 32 0 chr1 150069423 150069454 -92594899 - AluSg/x SINE Alu -194 106 75 515 252 14 21 chr1 150069632 150069775 -92594578 + MLT1L LTR MaLR 18 159 -456 802 153 80 40 chr1 150069775 150069951 -92594402 - MER5A DNA MER1_type -4 185 3 1088 249 163 15 chr1 150069951 150070357 -92593996 + MLT1L LTR MaLR 146 611 -4 432 320 113 14 chr1 150070438 150070801 -92593552 - L1MC/D LINE L1 -2059 5749 5351 706 139 0 41 chr1 150071090 150071212 -92593141 - AluSx SINE Alu 0 312 196 1081 117 7 0 chr1 150071213 150071358 -92592995 - AluSx SINE Alu -167 146 1 226 233 0 0 chr1 150071358 150071401 -92592952 + T-rich Low_complexity Low_complexity 5 47 0 792 296 143 22 chr1 150071947 150072450 -92591903 - L2 LINE L2 -508 2806 2243 2217 111 0 13 chr1 150073024 150073331 -92591022 - AluSq SINE Alu -10 303 1 725 234 65 11 chr1 150074111 150074413 -92589940 - L1ME LINE L1 -668 5494 5177 1305 176 0 18 chr1 150074415 150074636 -92589717 - AluSg/x SINE Alu -11 299 83 22 88 0 0 chr1 150074639 150074696 -92589657 + AT_rich Low_complexity Low_complexity 1 57 0 659 220 59 9 chr1 150075342 150075505 -92588848 + MLT1A2 LTR MaLR 182 367 -23 306 250 0 38 chr1 150075506 150075586 -92588767 - MIR SINE MIR -118 144 68 1794 129 70 0 chr1 150075742 150076013 -92588340 - AluSg SINE Alu -20 290 1 31 26 0 0 chr1 150076055 150076093 -92588260 + AT_rich Low_complexity Low_complexity 1 38 0 262 229 0 0 chr1 150076100 150076161 -92588192 - L2 LINE L2 -1037 2277 2217 1090 187 19 28 chr1 150076176 150076390 -92587963 - MER20 DNA MER1_type -7 212 1 2226 88 11 0 chr1 150077380 150077665 -92586688 + AluSp SINE Alu 1 288 -25 333 0 0 0 chr1 150077668 150077705 -92586648 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 1697 211 100 71 chr1 150077728 150077772 -92586581 - L1MCc LINE L1 -4887 1536 1495 306 0 0 0 chr1 150077772 150077806 -92586547 + (TG)n Simple_repeat Simple_repeat 2 35 0 1697 211 100 71 chr1 150077806 150078791 -92585562 - L1MCc LINE L1 -4928 1495 900 435 196 45 125 chr1 150078791 150078839 -92585514 + MER87 LTR ERV1 1 51 -490 2026 116 3 11 chr1 150078839 150079166 -92585187 + AluSx SINE Alu 1 325 0 435 196 45 125 chr1 150079166 150079284 -92585069 + MER87 LTR ERV1 51 148 -393 1122 246 78 48 chr1 150079431 150079916 -92584437 + LTR8A LTR ERV1 107 727 0 345 354 11 11 chr1 150079916 150080091 -92584262 - L1MCc LINE L1 -5520 903 729 1081 255 66 9 chr1 150080256 150080589 -92583764 - L1MCc LINE L1 -5992 431 80 2100 112 0 11 chr1 150081554 150081867 -92582486 - AluSx SINE Alu 0 310 1 2203 136 7 0 chr1 150082649 150082959 -92581394 - AluSx SINE Alu 0 312 1 2119 160 19 27 chr1 150083315 150083691 -92580662 - MER39 LTR ERV1 -2 705 333 465 246 0 0 chr1 150083691 150083809 -92580544 - L1M4 LINE L1 -1255 4891 4774 1143 168 84 14 chr1 150083904 150084118 -92580235 + MER39 LTR ERV1 2 230 -477 449 171 0 0 chr1 150084120 150084196 -92580157 - AluJ/FLAM SINE Alu -235 77 2 426 317 45 45 chr1 150084729 150084854 -92579499 - MIR SINE MIR -30 232 105 2321 88 10 0 chr1 150084854 150085148 -92579205 + AluSx SINE Alu 1 297 -15 426 317 45 45 chr1 150085148 150085221 -92579132 - MIR SINE MIR -156 106 34 2002 139 10 0 chr1 150085323 150085618 -92578735 - AluSx SINE Alu -14 298 1 461 301 46 13 chr1 150086144 150086297 -92578056 + MIR SINE MIR 31 188 -74 2498 117 26 103 chr1 150086333 150086482 -92577871 + MER4C LTR ERV1 1 160 -305 1736 131 0 88 chr1 150086482 150086787 -92577566 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr1 150086796 150086819 -92577534 + (TAAAG)n Simple_repeat Simple_repeat 2 24 0 2498 117 26 103 chr1 150086819 150086842 -92577511 + MER4C LTR ERV1 168 191 -274 1181 91 11 0 chr1 150086842 150087018 -92577335 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2498 117 26 103 chr1 150087018 150087338 -92577015 + MER4C LTR ERV1 191 465 0 961 206 64 0 chr1 150087876 150088080 -92576273 + MER20 DNA MER1_type 3 219 0 205 240 0 0 chr1 150090119 150090169 -92574184 - MIR SINE MIR -57 151 102 245 254 15 0 chr1 150090598 150090665 -92573688 - L2 LINE L2 -35 3278 3211 200 231 0 0 chr1 150090774 150090813 -92573540 + T-rich Low_complexity Low_complexity 3 41 0 194 308 67 58 chr1 150090820 150091060 -92573293 + L2 LINE L2 2148 2389 -925 704 308 88 39 chr1 150091292 150092081 -92572272 - L2 LINE L2 -97 3216 2387 1122 313 66 60 chr1 150092084 150092268 -92572085 - L2 LINE L2 -1379 1935 1754 1785 113 0 96 chr1 150092268 150092559 -92571794 + AluSx SINE Alu 1 263 -49 1122 313 66 60 chr1 150092559 150093383 -92570970 - L2 LINE L2 -1560 1754 920 725 274 28 14 chr1 150093693 150093905 -92570448 - MIR SINE MIR 0 262 48 276 30 0 0 chr1 150094666 150094699 -92569654 + (CA)n Simple_repeat Simple_repeat 2 34 0 369 243 47 0 chr1 150094890 150094997 -92569356 + L1ME4a LINE L1 5711 5822 -299 2127 107 4 0 chr1 150095004 150095285 -92569068 + AluSx SINE Alu 1 282 -30 405 0 0 0 chr1 150095290 150095335 -92569018 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 192 347 65 8 chr1 150097646 150097770 -92566583 + MIR SINE MIR 56 186 -76 454 239 54 45 chr1 150098449 150098601 -92565752 - MIR SINE MIR -63 145 14 291 278 87 32 chr1 150099933 150100059 -92564294 - L2 LINE L2 -2 3270 3138 775 260 61 9 chr1 150100181 150100412 -92563941 + MIR SINE MIR 2 244 -18 334 321 36 0 chr1 150101621 150101761 -92562592 + MIR3 SINE MIR 49 193 -15 201 211 0 0 chr1 150102506 150102558 -92561795 + CT-rich Low_complexity Low_complexity 3 54 0 304 186 268 0 chr1 150103651 150103748 -92560605 + L1ME4a LINE L1 5988 6110 -11 2140 143 39 0 chr1 150103942 150104277 -92560076 + MER7A DNA MER2_type 1 346 0 1133 87 0 0 chr1 150105078 150105216 -92559137 + AluSp/q SINE Alu 161 298 -15 1622 136 65 58 chr1 150105366 150105541 -92558812 - AluJo SINE Alu -2 310 138 2378 49 19 36 chr1 150105541 150105849 -92558504 + AluY SINE Alu 1 303 -8 2184 114 0 7 chr1 150105855 150106152 -92558201 + AluSx SINE Alu 1 295 -17 1622 136 65 58 chr1 150106152 150106277 -92558076 - AluJo SINE Alu -178 134 1 340 252 218 19 chr1 150106634 150106840 -92557513 + L2 LINE L2 3021 3267 -46 627 283 142 17 chr1 150106912 150107371 -92556982 - L1M4 LINE L1 -1136 5010 4495 512 219 18 9 chr1 150107639 150107753 -92556600 - MLT1L LTR MaLR -2 613 499 1713 105 155 4 chr1 150107902 150108160 -92556193 - AluSx SINE Alu -15 297 1 541 250 19 31 chr1 150108169 150108329 -92556024 - MLT1L LTR MaLR -326 289 132 899 242 54 42 chr1 150108839 150109174 -92555179 - HAL1 LINE L1 -5 2502 2164 427 219 59 0 chr1 150109452 150109601 -92554752 - HAL1 LINE L1 -647 1860 1678 333 325 20 49 chr1 150109706 150109909 -92554444 - HAL1 LINE L1 -2073 434 238 4730 209 16 79 chr1 150110994 150111118 -92553235 - L1MDa LINE L1 -1034 5506 5376 1573 140 85 37 chr1 150111118 150111390 -92552963 + AluJo SINE Alu 3 287 -25 4730 209 16 79 chr1 150111390 150112779 -92551574 - L1MDa LINE L1 -1164 5376 4088 336 24 0 0 chr1 150112779 150112820 -92551533 + (TG)n Simple_repeat Simple_repeat 2 42 0 4730 209 16 79 chr1 150112820 150112842 -92551511 - L1MDa LINE L1 -2452 4088 4066 320 178 14 55 chr1 150112834 150112907 -92551446 - L1M4 LINE L1 -3401 2745 2676 * 1085 247 29 35 chr1 150112899 150113012 -92551341 - L1MDa LINE L1 -2462 4078 3966 1645 22 0 0 chr1 150113012 150113193 -92551160 + AluYb8 SINE Alu 133 313 -5 1085 247 29 35 chr1 150113193 150113395 -92550958 - L1MDa LINE L1 -2574 3966 3765 735 167 0 45 chr1 150113411 150113543 -92550810 + FLAM_C SINE Alu 2 127 -16 2005 151 3 0 chr1 150113549 150113848 -92550505 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr1 150113848 150113881 -92550472 + AT_rich Low_complexity Low_complexity 1 33 0 3295 212 46 15 chr1 150113915 150114825 -92549528 - L1MDa LINE L1 -2866 3674 2737 1960 192 7 54 chr1 150114824 150115251 -92549102 - L1MDa LINE L1 -6114 426 20 * 330 26 0 0 chr1 150115252 150115291 -92549062 + (TG)n Simple_repeat Simple_repeat 2 40 0 1101 176 6 130 chr1 150115291 150115614 -92548739 - AluJo SINE Alu -18 284 2 4059 109 9 0 chr1 150115630 150116207 -92548146 + L1PA13 LINE L1 5579 6160 -3 457 145 0 0 chr1 150116207 150116276 -92548077 - FLAM SINE Alu -20 123 55 260 294 24 0 chr1 150117855 150117921 -92546432 + CT-rich Low_complexity Low_complexity 2 72 -16 2166 113 13 0 chr1 150117921 150118222 -92546131 - AluSx SINE Alu -7 305 1 260 294 24 0 chr1 150118222 150118240 -92546113 + CT-rich Low_complexity Low_complexity 72 88 0 603 255 38 22 chr1 150118372 150118556 -92545797 + L1ME1 LINE L1 3303 3489 -2657 31448 115 17 53 chr1 150118561 150121160 -92543193 + L1PA8 LINE L1 1 2693 -3479 200 59 29 0 chr1 150121160 150121194 -92543159 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 31448 115 17 53 chr1 150121194 150125014 -92539339 + L1PA8 LINE L1 2693 6172 0 5226 209 77 70 chr1 150125012 150125207 -92539146 + L1ME1 LINE L1 3475 3667 -2499 * 692 109 0 0 chr1 150125207 150125308 -92539045 + HY3 scRNA scRNA 1 101 0 5226 209 77 70 chr1 150125308 150125339 -92539014 + L1ME1 LINE L1 3667 3696 -2470 2029 143 13 0 chr1 150125339 150125646 -92538707 + AluSx SINE Alu 1 311 -1 5226 209 77 70 chr1 150125646 150126578 -92537775 + L1ME1 LINE L1 3696 4620 -1546 2176 145 3 0 chr1 150126578 150126889 -92537464 - AluSx SINE Alu 0 312 1 5226 209 77 70 chr1 150126889 150127337 -92537016 + L1ME1 LINE L1 4620 5063 -1103 1621 202 11 0 chr1 150127337 150127614 -92536739 + AluJb SINE Alu 1 280 -32 5226 209 77 70 chr1 150127614 150128028 -92536325 + L1ME1 LINE L1 5063 5472 -694 2216 187 74 40 chr1 150128028 150128130 -92536223 + MLT2B1 LTR ERVL 1 98 -422 2235 117 0 3 chr1 150128130 150128438 -92535915 + AluSx SINE Alu 1 307 -5 2216 187 74 40 chr1 150128438 150128838 -92535515 + MLT2B1 LTR ERVL 98 520 0 5226 209 77 70 chr1 150128838 150129495 -92534858 + L1ME1 LINE L1 5472 6161 -5 347 229 38 0 chr1 150129511 150129616 -92534737 + L1ME3A LINE L1 5191 5299 -847 * 488 277 114 7 chr1 150129614 150129845 -92534508 + L1ME3A LINE L1 5628 5898 -272 2078 102 20 30 chr1 150129845 150130148 -92534205 + AluSg SINE Alu 1 300 -10 488 277 114 7 chr1 150130148 150130205 -92534148 + L1ME3A LINE L1 5898 5947 -223 21 0 0 0 chr1 150130392 150130413 -92533940 + AT_rich Low_complexity Low_complexity 1 21 0 2143 77 18 0 chr1 150131007 150131280 -92533073 + AluY SINE Alu 19 296 -15 1948 132 0 39 chr1 150131606 150131917 -92532436 - AluSx SINE Alu -13 299 1 1170 329 73 33 chr1 150133240 150134207 -92530146 + L2 LINE L2 1707 2712 -602 381 298 6 81 chr1 150134322 150134483 -92529870 + L2 LINE L2 2905 3053 -219 394 273 53 20 chr1 150134640 150134790 -92529563 + MIR SINE MIR 19 173 -89 1908 142 0 14 chr1 150134820 150135131 -92529222 - AluJo SINE Alu 0 309 3 331 311 86 24 chr1 150135882 150136091 -92528262 + MIR SINE MIR 20 241 -21 757 281 45 30 chr1 150138241 150138575 -92525778 + L3 LINE CR1 1064 1402 -175 1279 138 4 71 chr1 150139385 150139610 -92524743 + MER20 DNA MER1_type 8 217 -2 1897 167 13 40 chr1 150139724 150140096 -92524257 + MLT1A1 LTR MaLR 1 362 -3 1352 229 75 14 chr1 150141751 150142228 -92522125 - MER21A LTR ERV1 -118 813 208 316 248 69 0 chr1 150142232 150142333 -92522020 - MER21B LTR ERV1 -86 777 670 275 244 12 85 chr1 150142440 150142522 -92521831 - MER21B LTR ERV1 -776 87 12 381 264 45 52 chr1 150142552 150142707 -92521646 + L1ME LINE L1 5596 5749 -421 2445 84 3 0 chr1 150143884 150144183 -92520170 + AluSp SINE Alu 2 301 -12 23 0 0 0 chr1 150144193 150144216 -92520137 + AT_rich Low_complexity Low_complexity 1 23 0 229 346 37 0 chr1 150144295 150144402 -92519951 + L1ME LINE L1 5469 5579 -583 1286 285 75 7 chr1 150144424 150145025 -92519328 - L2 LINE L2 -1 3312 2665 221 175 0 0 chr1 150145049 150145089 -92519264 - L2 LINE L2 -787 2527 2488 306 200 0 0 chr1 150145220 150145285 -92519068 - MIR SINE MIR -25 237 173 2213 116 3 0 chr1 150145402 150145696 -92518657 + AluSq SINE Alu 1 295 -18 632 184 29 29 chr1 150145848 150145984 -92518369 + L1PA10 LINE L1 6031 6166 -2 469 247 31 3 chr1 150146161 150146324 -92518029 + MIR SINE MIR 19 231 -31 402 180 11 22 chr1 150149747 150149836 -92514517 + MIR SINE MIR 108 195 -67 1729 93 31 39 chr1 150150010 150150267 -92514086 + AluSq SINE Alu 2 256 -57 368 300 114 23 chr1 150150532 150150795 -92513558 - L2 LINE L2 -167 3105 2819 2262 108 0 6 chr1 150151060 150151374 -92512979 + AluSx SINE Alu 1 312 0 304 339 0 0 chr1 150152771 150152889 -92511464 + C-rich Low_complexity Low_complexity 1 118 0 2164 66 0 33 chr1 150153906 150154180 -92510173 + AluSq SINE Alu 37 301 -12 2197 83 36 23 chr1 150155540 150155841 -92508512 - AluSx SINE Alu -7 305 1 5311 103 56 40 chr1 150156675 150157533 -92506820 + MER4D LTR ERV1 1 872 0 257 217 50 0 chr1 150157739 150157799 -92506554 + MIR SINE MIR 109 171 -91 776 305 10 1 chr1 150157933 150158202 -92506151 - L1MC/D LINE L1 -382 5739 5466 597 282 24 3 chr1 150158790 150158979 -92505374 + MIR SINE MIR 2 192 -65 1660 246 163 6 chr1 150159030 150159570 -92504783 - HsTC2 DNA Tc2 0 1898 1274 286 180 45 34 chr1 150159590 150159679 -92504674 - MER104 DNA Tc2 -87 93 4 2272 105 3 0 chr1 150159870 150160165 -92504188 + AluSq SINE Alu 1 296 -17 642 248 65 37 chr1 150160171 150160417 -92503936 - L3 LINE CR1 -78 1499 1247 207 0 0 0 chr1 150160527 150160550 -92503803 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 2508 65 0 9 chr1 150160568 150160889 -92503464 - L1PA7 LINE L1 -1 6153 5836 1847 185 6 0 chr1 150161509 150161823 -92502530 + 7SLRNA srpRNA srpRNA 1 316 -4 303 28 0 0 chr1 150162230 150162266 -92502087 + (GA)n Simple_repeat Simple_repeat 1 36 0 496 257 5 70 chr1 150162461 150162648 -92501705 - MER5A DNA MER1_type -6 183 9 368 295 33 0 chr1 150162971 150163093 -92501260 - LTR67 LTR ERVL 0 557 432 354 235 51 0 chr1 150163605 150163703 -92500650 - MIR3 SINE MIR -9 199 97 424 275 134 114 chr1 150163866 150164206 -92500147 - L3 LINE CR1 -703 874 515 1691 116 0 0 chr1 150164206 150164430 -92499923 - AluSg/x SINE Alu -3 309 86 424 275 134 114 chr1 150164430 150164697 -92499656 - L3 LINE CR1 -1062 515 255 401 299 26 39 chr1 150165400 150165554 -92498799 - MIR SINE MIR -109 153 2 316 306 31 102 chr1 150166330 150166526 -92497827 - MIR SINE MIR -78 184 3 372 22 0 0 chr1 150167103 150167148 -92497205 + (TG)n Simple_repeat Simple_repeat 2 46 0 318 236 125 42 chr1 150167680 150167824 -92496529 - L1ME4a LINE L1 -86 6035 5880 4627 102 22 1 chr1 150167840 150168518 -92495835 + L1MA2 LINE L1 5613 6304 0 234 315 23 31 chr1 150168561 150168691 -92495662 - L1ME4a LINE L1 -1979 5829 5701 2010 214 91 29 chr1 150168716 150169278 -92495075 - MER77 LTR ERV1 -8 597 1 792 317 171 51 chr1 150169285 150170173 -92494180 + L2 LINE L2 1215 1995 -1277 1610 114 23 151 chr1 150170173 150170523 -92493830 + AluYb8 SINE Alu 1 305 -13 180 0 0 0 chr1 150170523 150170543 -92493810 + (ATG)n Simple_repeat Simple_repeat 2 21 0 792 317 171 51 chr1 150170543 150171445 -92492908 + L2 LINE L2 1994 3217 -55 583 293 13 49 chr1 150171451 150171484 -92492869 - L1MB3 LINE L1 -295 5888 5855 2030 112 3 55 chr1 150171484 150171648 -92492705 - AluSx SINE Alu -16 296 154 1954 116 70 0 chr1 150171648 150171933 -92492420 - AluSx SINE Alu -7 305 1 2030 112 3 55 chr1 150171933 150172080 -92492273 - AluSx SINE Alu -158 154 1 583 293 13 49 chr1 150172080 150172188 -92492165 - L1MB3 LINE L1 -328 5855 5754 469 157 10 10 chr1 150172188 150172290 -92492063 + CT-rich Low_complexity Low_complexity 2 103 0 2278 125 0 0 chr1 150172304 150172609 -92491744 - AluSx SINE Alu -7 305 1 3001 147 13 19 chr1 150172610 150173309 -92491044 - L1MB3 LINE L1 -387 5784 5087 430 259 28 42 chr1 150173409 150173552 -92490801 + LTR25 LTR ERV1 223 363 -431 273 250 0 90 chr1 150173549 150173649 -92490704 + MER61E LTR ERV1 99 189 -380 * 999 137 33 16 chr1 150173728 150173911 -92490442 + MER61E LTR ERV1 341 526 -43 896 222 95 42 chr1 150173932 150174172 -92490181 - L1MB3 LINE L1 -1055 5091 4830 3123 119 7 2 chr1 150174172 150174618 -92489735 - MER83 LTR ERV1 0 448 1 896 222 95 42 chr1 150174618 150174683 -92489670 - L1MB3 LINE L1 -1316 4830 4770 917 241 84 7 chr1 150174685 150174984 -92489369 + MER90 LTR ERV1 253 574 -1 1963 82 60 25 chr1 150176364 150176645 -92487708 + AluSg SINE Alu 2 292 -18 393 259 171 38 chr1 150177449 150177712 -92486641 - L2 LINE L2 -358 2956 2659 1067 170 0 22 chr1 150177747 150177929 -92486424 - AluJo SINE Alu -134 178 1 1172 188 2 45 chr1 150178419 150178805 -92485548 - L1M2 LINE L1 -688 5609 5254 825 265 20 52 chr1 150179509 150179815 -92484538 + MLT1C LTR MaLR 170 465 -2 996 248 31 14 chr1 150180207 150180493 -92483860 - LTR43 LTR ERV1 -137 465 175 26 50 0 0 chr1 150180734 150180774 -92483579 + GC_rich Low_complexity Low_complexity 1 40 0 759 0 0 0 chr1 150180966 150181049 -92483304 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 483 18 0 0 chr1 150182287 150182343 -92482010 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 596 40 0 0 chr1 150182726 150182800 -92481553 + tRNA-Gly-GGC tRNA tRNA 1 74 0 270 116 0 0 chr1 150183180 150183223 -92481130 + (TC)n Simple_repeat Simple_repeat 1 43 0 300 127 0 0 chr1 150183866 150183921 -92480432 + (CA)n Simple_repeat Simple_repeat 1 55 0 * 498 103 0 0 chr1 150183920 150184007 -92480346 + (TC)n Simple_repeat Simple_repeat 1 87 0 2685 82 5 2 chr1 150185011 150185432 -92478921 + MER11A LTR ERVK 2 520 -746 1994 224 7 35 chr1 150185434 150185984 -92478369 + L1MA4A LINE L1 5737 6271 -32 642 0 0 0 chr1 150186637 150186709 -92477644 - tRNA-Glu-GAG tRNA tRNA -3 72 1 647 14 0 0 chr1 150186994 150187066 -92477287 - tRNA-Gly-GGA tRNA tRNA -3 72 1 43 85 0 20 chr1 150187070 150187223 -92477130 + GC_rich Low_complexity Low_complexity 1 150 0 662 13 0 0 chr1 150187649 150187724 -92476629 - tRNA-Asp-GAC tRNA tRNA 0 75 1 26 50 0 0 chr1 150188127 150188167 -92476186 + GC_rich Low_complexity Low_complexity 1 40 0 705 48 0 0 chr1 150188358 150188441 -92475912 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 2546 81 3 0 chr1 150189335 150189643 -92474710 + AluSp SINE Alu 1 309 -4 2402 95 7 0 chr1 150189837 150190143 -92474210 + AluSp SINE Alu 1 308 -5 23 78 0 0 chr1 150190146 150190197 -92474156 + AT_rich Low_complexity Low_complexity 1 51 0 1744 151 71 40 chr1 150190495 150190846 -92473507 + MLT1A1 LTR MaLR 4 365 0 262 273 102 23 chr1 150192652 150192740 -92471613 + MIR SINE MIR 150 244 -18 408 309 36 0 chr1 150193953 150194092 -92470261 + MIR3 SINE MIR 49 192 -16 526 160 0 17 chr1 150194806 150194925 -92469428 + CT-rich Low_complexity Low_complexity 4 120 0 624 354 25 12 chr1 150195681 150196003 -92468350 + MER93a LTR ERV1 77 402 0 831 197 97 58 chr1 150197289 150197598 -92466755 + MER51-int LTR ERV1 1040 1360 -3576 329 194 0 0 chr1 150197721 150197793 -92466560 + MER51-int LTR ERV1 1749 1820 -3116 * 687 133 33 67 chr1 150197789 150197939 -92466414 + MER51-int LTR ERV1 3603 3747 -1189 * 1094 212 103 134 chr1 150197938 150198688 -92465665 + MER51-int LTR ERV1 4136 4716 -220 1732 172 69 60 chr1 150198836 150199302 -92465051 - LTR54 LTR ERV1 -31 479 10 421 282 35 17 chr1 150199354 150199528 -92464825 + MER51-int LTR ERV1 6973 7149 -667 319 339 48 32 chr1 150199868 150200116 -92464237 + MER93a LTR ERV1 59 310 -92 1806 141 12 56 chr1 150200136 150200456 -92463897 - AluSx SINE Alu -6 306 1 1932 152 32 35 chr1 150201694 150202070 -92462283 - THE1C LTR MaLR 0 375 1 1604 267 76 20 chr1 150202108 150202885 -92461468 + L2 LINE L2 2508 3313 0 532 252 23 0 chr1 150202896 150203027 -92461326 - MIR3 SINE MIR -6 202 69 2260 105 78 20 chr1 150203079 150203423 -92460930 + THE1B LTR MaLR 1 364 0 695 214 57 13 chr1 150203591 150203750 -92460603 + FRAM SINE Alu 1 166 0 483 125 0 0 chr1 150204678 150204750 -92459603 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 661 0 0 0 chr1 150205379 150205451 -92458902 - tRNA-Gly-GGC tRNA tRNA -2 72 1 564 286 89 40 chr1 150209038 150209262 -92455091 + MIR SINE MIR 28 262 0 422 271 45 101 chr1 150209229 150209476 -92454877 - MIR SINE MIR -1 261 29 * 2127 124 0 0 chr1 150209624 150209906 -92454447 - AluSx SINE Alu -30 282 1 632 149 27 27 chr1 150210902 150211050 -92453303 - L1MD3 LINE L1 0 7995 7848 222 265 59 15 chr1 150211214 150211282 -92453071 + L2 LINE L2 3202 3272 0 759 0 0 0 chr1 150211546 150211629 -92452724 - tRNA-Leu-CTG tRNA tRNA -3 83 1 647 14 0 0 chr1 150212318 150212390 -92451963 + tRNA-Gly-GGA tRNA tRNA 1 72 -3 260 223 86 24 chr1 150212718 150212834 -92451519 + MER3 DNA MER1_type 70 123 -86 1330 161 93 28 chr1 150212840 150213194 -92451159 + MER3 DNA MER1_type 2235 2611 0 509 86 0 0 chr1 150213332 150213402 -92450951 + tRNA-Asp-GAC tRNA tRNA 3 72 -3 1535 220 39 29 chr1 150213435 150213848 -92450505 + HUERS-P3 LTR ERV1 8480 8896 -23 2616 157 49 2 chr1 150213870 150214317 -92450036 + LTR25 LTR ERV1 1 468 -326 671 486 19 19 chr1 150214358 150214615 -92449738 + LTR25 LTR ERV1 408 664 -130 225 174 65 0 chr1 150215018 150215064 -92449289 + MIR SINE MIR 109 157 -105 453 284 88 66 chr1 150215842 150215982 -92448371 - L1M4 LINE L1 -3272 2874 2738 2087 116 6 55 chr1 150215982 150216310 -92448043 + AluSx SINE Alu 1 312 0 453 284 88 66 chr1 150216310 150216820 -92447533 - L1M4 LINE L1 -3408 2738 2210 1702 126 72 4 chr1 150216885 150217147 -92447206 + AluSx SINE Alu 1 280 -32 891 192 0 0 chr1 150217450 150217596 -92446757 + FRAM SINE Alu 1 146 -30 4770 167 53 57 chr1 150217924 150218999 -92445354 + MER11C LTR ERVK 1 1071 0 2148 103 6 10 chr1 150219452 150219763 -92444590 + AluSx SINE Alu 1 310 -2 1287 107 0 11 chr1 150219763 150219940 -92444413 + AluSg/x SINE Alu 134 308 -4 222 37 0 0 chr1 150219968 150219995 -92444358 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 204 224 15 30 chr1 150219995 150220062 -92444291 + (TA)n Simple_repeat Simple_repeat 2 67 0 2338 40 0 0 chr1 150220222 150220495 -92443858 - L1PA5 LINE L1 -198 5956 5684 1288 65 29 0 chr1 150220498 150220668 -92443685 + L1PA5 LINE L1 5965 6139 -15 25 0 0 0 chr1 150220836 150220861 -92443492 + AT_rich Low_complexity Low_complexity 1 25 0 645 14 0 0 chr1 150221464 150221538 -92442815 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 199 185 15 92 chr1 150222348 150222413 -92441940 + L2 LINE L2 2951 3010 -262 289 298 66 8 chr1 150222476 150222597 -92441756 + L2 LINE L2 3138 3265 -7 206 342 0 13 chr1 150223004 150223080 -92441273 - L3 LINE CR1 -1078 499 425 367 239 44 9 chr1 150224789 150224902 -92439451 - L1MC4 LINE L1 0 8042 7926 464 224 55 77 chr1 150225242 150225425 -92438928 + MIR SINE MIR 84 262 0 301 308 87 0 chr1 150225426 150225530 -92438823 - MIR SINE MIR -69 139 27 336 231 234 27 chr1 150227007 150227263 -92437090 + L1ME4a LINE L1 5812 6120 -1 22 35 0 0 chr1 150227264 150227293 -92437060 + AT_rich Low_complexity Low_complexity 1 29 0 217 419 50 6 chr1 150227603 150227763 -92436590 - L2 LINE L2 -4 3268 3102 2346 103 0 0 chr1 150227847 150228149 -92436204 + AluY SINE Alu 1 302 -9 2221 118 0 10 chr1 150229011 150229325 -92435028 + AluSx SINE Alu 1 311 -1 374 267 99 31 chr1 150230605 150230766 -92433587 - MIR3 SINE MIR -7 201 30 1696 134 10 62 chr1 150232884 150233189 -92431164 + AluJo SINE Alu 11 299 -13 284 233 17 0 chr1 150233247 150233307 -92431046 + CT-rich Low_complexity Low_complexity 5 65 0 222 291 38 13 chr1 150233556 150233635 -92430718 - L2 LINE L2 -296 2976 2896 309 198 176 0 chr1 150233770 150233861 -92430492 + MIR SINE MIR 100 206 -56 404 312 0 0 chr1 150234023 150234132 -92430221 + L2 LINE L2 3151 3259 -13 718 366 39 17 chr1 150234169 150234710 -92429643 - L2 LINE L2 -540 2774 2222 233 268 28 0 chr1 150234877 150234948 -92429405 + GA-rich Low_complexity Low_complexity 5 77 0 2061 113 92 63 chr1 150235468 150235712 -92428641 + MLT1B LTR MaLR 1 261 -129 1268 133 5 23 chr1 150235712 150235930 -92428423 + L1PA14 LINE L1 5948 6161 0 2061 113 92 63 chr1 150235930 150236064 -92428289 + MLT1B LTR MaLR 261 390 0 5069 88 0 6 chr1 150236345 150237006 -92427347 - LTR8 LTR ERV1 -34 657 1 184 400 0 0 chr1 150237458 150237558 -92426795 - L2 LINE L2 -2047 1267 1168 3935 188 65 22 chr1 150237838 150237884 -92426469 - MER21B LTR ERV1 -52 811 768 252 0 0 0 chr1 150237884 150237912 -92426441 + (CAAG)n Simple_repeat Simple_repeat 4 31 0 3935 188 65 22 chr1 150237912 150237947 -92426406 - MER21B LTR ERV1 -95 768 736 3408 128 19 15 chr1 150237947 150238472 -92425881 - MER1A DNA MER1_type 0 527 1 3935 188 65 22 chr1 150238472 150239143 -92425210 - MER21B LTR ERV1 -127 736 26 2085 202 36 28 chr1 150239143 150239613 -92424740 + LTR62 LTR ERVK 1 474 -245 606 255 48 7 chr1 150239733 150239878 -92424475 - MLT1G LTR MaLR -427 163 13 257 194 45 0 chr1 150240382 150240449 -92423904 + MLT1L LTR MaLR 128 197 -418 270 285 124 14 chr1 150240592 150240789 -92423564 + MLT1L LTR MaLR 363 606 -1 245 291 104 52 chr1 150240904 150241038 -92423315 + MIR3 SINE MIR 43 183 -25 2284 103 0 0 chr1 150241165 150241457 -92422896 - AluSx SINE Alu -20 292 1 565 200 0 19 chr1 150241499 150241604 -92422749 - FLAM_A SINE Alu -16 126 24 23 0 0 0 chr1 150241681 150241704 -92422649 + AT_rich Low_complexity Low_complexity 1 23 0 1717 164 4 0 chr1 150241714 150242008 -92422345 + AluJb SINE Alu 7 301 0 353 315 114 0 chr1 150242666 150242815 -92421538 + MIR3 SINE MIR 36 201 -7 254 0 32 0 chr1 150243571 150243602 -92420751 - AluSg/x SINE Alu -194 106 75 508 252 14 21 chr1 150243781 150243924 -92420429 + MLT1L LTR MaLR 18 159 -456 830 158 79 34 chr1 150243924 150244101 -92420252 - MER5A DNA MER1_type -4 185 1 1048 256 164 15 chr1 150244102 150244505 -92419848 + MLT1L LTR MaLR 149 611 -4 428 320 113 14 chr1 150244586 150244949 -92419404 - L1MC/D LINE L1 -2059 5749 5351 1636 104 183 19 chr1 150245250 150245518 -92418835 - AluSx SINE Alu 0 312 1 799 294 143 22 chr1 150246051 150246554 -92417799 - L2 LINE L2 -508 2806 2243 2861 10 0 0 chr1 150247127 150247432 -92416921 - AluYa5 SINE Alu -6 305 1 198 177 145 0 chr1 150247799 150247861 -92416492 - L2 LINE L2 -216 3056 2986 763 231 51 11 chr1 150248212 150248517 -92415836 - L1ME LINE L1 -670 5494 5177 1426 155 0 18 chr1 150248519 150248745 -92415608 - AluSg/x SINE Alu -6 306 85 23 86 0 0 chr1 150248748 150248806 -92415547 + AT_rich Low_complexity Low_complexity 1 58 0 674 212 59 9 chr1 150249007 150249170 -92415183 + MLT1A2 LTR MaLR 182 367 -23 294 263 0 38 chr1 150249171 150249251 -92415102 - MIR SINE MIR -118 144 68 1711 140 70 0 chr1 150249406 150249677 -92414676 - AluSg SINE Alu -20 290 1 31 26 0 0 chr1 150249718 150249756 -92414597 + AT_rich Low_complexity Low_complexity 1 38 0 251 246 0 0 chr1 150249763 150249824 -92414529 - L2 LINE L2 -1037 2277 2217 1104 179 19 28 chr1 150249841 150250053 -92414300 - MER20 DNA MER1_type -9 210 1 2078 102 14 0 chr1 150251043 150251326 -92413027 + AluSp SINE Alu 1 287 -26 198 0 0 0 chr1 150251330 150251352 -92413001 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 1687 213 99 71 chr1 150251380 150251423 -92412930 - L1MCc LINE L1 -4887 1536 1496 342 0 0 0 chr1 150251423 150251461 -92412892 + (TG)n Simple_repeat Simple_repeat 2 39 0 1687 213 99 71 chr1 150251461 150252446 -92411907 - L1MCc LINE L1 -4927 1496 900 384 209 45 125 chr1 150252446 150252494 -92411859 + MER87 LTR ERV1 1 51 -490 2081 109 3 11 chr1 150252494 150252825 -92411528 + AluSx SINE Alu 1 329 0 384 209 45 125 chr1 150252825 150252943 -92411410 + MER87 LTR ERV1 51 148 -393 1146 256 75 47 chr1 150253090 150253575 -92410778 + LTR8A LTR ERV1 107 727 0 395 325 13 7 chr1 150253575 150253726 -92410627 - L1MCc LINE L1 -5520 903 752 207 0 0 0 chr1 150253737 150253760 -92410593 + (TTG)n Simple_repeat Simple_repeat 2 24 0 467 204 148 14 chr1 150253924 150254066 -92410287 - L1MCc LINE L1 -5992 431 271 831 147 0 0 chr1 150254170 150254306 -92410047 + AluSg/x SINE Alu 163 298 -12 192 260 0 0 chr1 150254475 150254525 -92409828 + L2 LINE L2 3264 3313 0 592 95 0 12 chr1 150254789 150254873 -92409480 - tRNA-Leu-CTG tRNA tRNA -3 83 1 482 114 0 0 chr1 150255561 150255631 -92408722 + tRNA-Gly-GGA tRNA tRNA 1 70 -5 1085 176 86 20 chr1 150255938 150256182 -92408171 + LTR25 LTR ERV1 405 664 -130 206 174 65 0 chr1 150256585 150256631 -92407722 + MIR SINE MIR 109 157 -105 416 278 90 73 chr1 150257409 150257549 -92406804 - L1M4 LINE L1 -3272 2874 2738 2079 116 6 55 chr1 150257549 150257877 -92406476 + AluSx SINE Alu 1 312 0 416 278 90 73 chr1 150257877 150258390 -92405963 - L1M4 LINE L1 -3408 2738 2210 1705 130 72 4 chr1 150258455 150258717 -92405636 + AluSx SINE Alu 1 280 -32 10736 51 10 57 chr1 150258799 150260242 -92404111 - SVA Other Other 0 1386 12 1754 155 43 13 chr1 150260363 150260666 -92403687 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 150260690 150260712 -92403641 + AT_rich Low_complexity Low_complexity 1 22 0 349 333 0 10 chr1 150261378 150261477 -92402876 - MIR SINE MIR -157 105 8 23 0 0 0 chr1 150261514 150261537 -92402816 + AT_rich Low_complexity Low_complexity 1 23 0 2348 98 0 0 chr1 150261977 150262272 -92402081 + AluSx SINE Alu 2 296 -16 866 138 0 0 chr1 150262858 150262981 -92401372 + FLAM_C SINE Alu 13 135 -8 515 165 0 61 chr1 150263612 150263717 -92400636 - L1MB8 LINE L1 -6 6172 6073 1938 145 70 22 chr1 150263717 150264075 -92400278 - THE1C LTR MaLR 0 375 1 2439 82 3 0 chr1 150264104 150264398 -92399955 - AluSp SINE Alu -18 295 1 280 209 0 22 chr1 150264408 150264499 -92399854 - L1M4 LINE L1 -954 5192 5104 461 263 83 44 chr1 150264576 150265065 -92399288 - L1MB8 LINE L1 -753 5393 5189 2260 105 3 3 chr1 150265131 150265425 -92398928 - AluSx SINE Alu -18 294 1 333 0 0 0 chr1 150265752 150265789 -92398564 + (TA)n Simple_repeat Simple_repeat 1 37 0 1379 131 0 0 chr1 150267019 150267202 -92397151 + AluSx SINE Alu 1 183 -129 1985 110 79 0 chr1 150267503 150267793 -92396560 - AluSq SINE Alu 0 313 1 748 154 24 16 chr1 150267925 150268048 -92396305 + AluSq/x SINE Alu 4 127 -186 240 254 17 0 chr1 150268220 150268279 -92396074 - Zaphod DNA AcHobo -9 4022 3963 1266 62 0 0 chr1 150268283 150268443 -92395910 - AluY SINE Alu 0 311 152 1453 148 5 0 chr1 150268491 150268708 -92395645 - AluSq SINE Alu -21 292 75 2068 98 7 14 chr1 150268819 150269115 -92395238 + AluSx SINE Alu 1 294 -18 918 273 33 18 chr1 150269115 150269390 -92394963 - MER115 DNA AcHobo -82 611 333 615 276 122 0 chr1 150269423 150269644 -92394709 - MER115 DNA AcHobo -445 248 1 437 313 65 37 chr1 150269710 150269956 -92394397 + L1ME LINE L1 3903 4155 -1991 782 207 128 96 chr1 150270063 150270447 -92393906 + L1MC5 LINE L1 7276 7646 -315 2308 73 24 7 chr1 150270447 150270735 -92393618 + AluSc SINE Alu 1 293 -16 782 207 128 96 chr1 150270735 150270816 -92393537 + L1MC5 LINE L1 7646 7723 -238 2308 101 0 0 chr1 150270816 150271113 -92393240 + AluSx SINE Alu 1 297 -15 782 207 128 96 chr1 150271113 150271264 -92393089 + L1MC5 LINE L1 7723 7913 -48 22 70 0 0 chr1 150271272 150271315 -92393038 + AT_rich Low_complexity Low_complexity 1 43 0 816 189 0 0 chr1 150271429 150271556 -92392797 - FLAM_A SINE Alu -6 127 1 246 244 26 13 chr1 150271582 150271660 -92392693 + L1P LINE L1 4282 4360 -1786 321 231 132 38 chr1 150271667 150271879 -92392474 + L1ME LINE L1 5012 5243 -903 866 111 0 0 chr1 150271908 150272025 -92392328 + FLAM_C SINE Alu 1 117 -16 4690 120 51 30 chr1 150272094 150272328 -92392025 - MER49 LTR ERV1 -62 861 633 2081 128 0 0 chr1 150272328 150272626 -92391727 - AluSg SINE Alu -12 298 1 4690 120 51 30 chr1 150272626 150273234 -92391119 - MER49 LTR ERV1 -290 633 1 268 268 208 0 chr1 150273323 150273506 -92390847 + L1ME LINE L1 5342 5562 -600 1931 148 10 3 chr1 150273536 150273839 -92390514 + AluJb SINE Alu 1 305 -7 28 0 0 0 chr1 150274035 150274063 -92390290 + AT_rich Low_complexity Low_complexity 1 28 0 2332 59 0 16 chr1 150274368 150274675 -92389678 - AluSg SINE Alu -8 302 1 673 266 120 4 chr1 150276984 150277217 -92387136 - MIR SINE MIR -1 261 2 2327 98 3 0 chr1 150277343 150277649 -92386704 - AluSp SINE Alu -6 307 1 180 0 0 0 chr1 150278049 150278069 -92386284 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1534 162 28 38 chr1 150278071 150278361 -92385992 - AluJo SINE Alu -25 287 1 1004 177 36 0 chr1 150278538 150278730 -92385623 - MER58B DNA MER1_type 0 341 143 1050 140 104 5 chr1 150278731 150278952 -92385401 - L1MC2 LINE L1 -1 6343 6101 3308 98 2 30 chr1 150278952 150279450 -92384903 - MER1A DNA MER1_type 0 529 46 4355 114 14 63 chr1 150279464 150279830 -92384523 - L1MC2 LINE L1 -236 6108 5800 1447 195 77 16 chr1 150279830 150280194 -92384159 - MLT1B LTR MaLR -2 388 3 4355 114 14 63 chr1 150280194 150280618 -92383735 - L1MC2 LINE L1 -544 5800 5357 257 188 0 47 chr1 150280688 150280752 -92383601 + CT-rich Low_complexity Low_complexity 3 63 0 715 313 107 14 chr1 150280818 150281099 -92383254 + L2 LINE L2 308 614 -2700 985 170 0 43 chr1 150281100 150281288 -92383065 - AluJo SINE Alu -12 300 121 2986 264 133 61 chr1 150281291 150282458 -92381895 + L2 LINE L2 622 1888 -1426 2334 95 7 13 chr1 150282458 150282627 -92381726 - AluSx SINE Alu -8 304 136 2207 77 7 27 chr1 150282627 150282924 -92381429 - AluY SINE Alu -9 302 12 2334 95 7 13 chr1 150282924 150283060 -92381293 - AluSx SINE Alu -176 136 1 2986 264 133 61 chr1 150283060 150283147 -92381206 + L2 LINE L2 1888 1967 -1347 371 258 81 40 chr1 150283403 150283601 -92380752 - L1MC4 LINE L1 -27 8015 7810 243 296 16 40 chr1 150283609 150283734 -92380619 - L1MC4a LINE L1 -1211 6597 6476 573 244 122 18 chr1 150283745 150283901 -92380452 - L2 LINE L2 -607 2707 2532 351 113 0 0 chr1 150283901 150283954 -92380399 + (CA)n Simple_repeat Simple_repeat 2 54 0 2893 227 50 120 chr1 150283961 150285625 -92378728 - L1MC4 LINE L1 -5 8037 6489 320 102 0 0 chr1 150285625 150285674 -92378679 - U5 snRNA snRNA -67 49 1 217 175 35 35 chr1 150285946 150286003 -92378350 + GA-rich Low_complexity Low_complexity 1 57 0 2665 229 92 10 chr1 150286023 150286731 -92377622 - L2 LINE L2 -776 2538 1773 345 278 30 8 chr1 150287390 150287523 -92376830 - MER117 DNA MER1_type -61 136 1 206 262 74 66 chr1 150288015 150288137 -92376216 + MIR3 SINE MIR 54 176 -32 236 367 101 0 chr1 150288826 150288935 -92375418 + MIR3 SINE MIR 57 176 -32 2244 119 0 0 chr1 150289239 150289532 -92374821 - AluSx SINE Alu -19 293 1 2635 58 0 0 chr1 150289856 150290167 -92374186 - AluY SINE Alu 0 311 1 223 71 48 0 chr1 150290177 150290219 -92374134 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1347 157 4 30 chr1 150290224 150290454 -92373899 - AluJo SINE Alu -32 280 57 229 372 12 0 chr1 150291839 150291925 -92372428 - LTR50 LTR ERVL -322 473 387 276 233 196 12 chr1 150292010 150292157 -92372196 - LTR50 LTR ERVL -594 201 1 1712 222 105 52 chr1 150292274 150292880 -92371473 - MLT1G LTR MaLR 0 590 3 196 324 40 14 chr1 150292888 150292962 -92371391 + L2 LINE L2 3197 3272 0 183 184 0 0 chr1 150293234 150293272 -92371081 + (CATA)n Simple_repeat Simple_repeat 4 41 0 22 56 0 0 chr1 150294164 150294200 -92370153 + AT_rich Low_complexity Low_complexity 1 36 0 533 337 122 27 chr1 150294218 150294586 -92369767 + L2 LINE L2 2472 2874 -440 371 326 62 53 chr1 150294608 150294835 -92369518 + L2 LINE L2 2827 3055 -217 27 0 0 0 chr1 150294879 150294906 -92369447 + AT_rich Low_complexity Low_complexity 1 27 0 979 238 140 85 chr1 150294906 150295461 -92368892 - L1MC4a LINE L1 -1886 5922 5326 2144 97 0 41 chr1 150295461 150295780 -92368573 - AluSq SINE Alu -7 306 1 979 238 140 85 chr1 150295780 150295858 -92368495 - L1MC4a LINE L1 -2482 5326 5254 1687 253 75 16 chr1 150296144 150296768 -92367585 - L1MC4 LINE L1 -142 7900 7240 815 182 37 21 chr1 150296770 150296957 -92367396 - L1MC4 LINE L1 -953 7089 6900 349 355 7 29 chr1 150297198 150297336 -92367017 - L1MC4a LINE L1 -1134 5012 4878 652 322 70 58 chr1 150297514 150298290 -92366063 - L1ME LINE L1 -460 5702 4916 243 287 66 0 chr1 150298330 150298466 -92365887 - L1ME LINE L1 -1624 4522 4378 27 36 0 36 chr1 150298466 150298500 -92365853 + AT_rich Low_complexity Low_complexity 1 34 -20 2625 109 5 30 chr1 150298500 150298931 -92365422 - L1MA1 LINE L1 0 6302 5883 27 36 0 36 chr1 150298931 150298952 -92365401 + AT_rich Low_complexity Low_complexity 34 54 0 24 53 0 0 chr1 150299495 150299533 -92364820 + AT_rich Low_complexity Low_complexity 1 38 0 244 200 0 0 chr1 150299542 150299597 -92364756 - L1M LINE L1 -986 5373 5319 26 50 0 0 chr1 150299767 150299807 -92364546 + AT_rich Low_complexity Low_complexity 1 40 0 1877 149 0 3 chr1 150300022 150300343 -92364010 + AluSx SINE Alu 1 320 0 507 56 0 0 chr1 150300557 150300628 -92363725 + (TG)n Simple_repeat Simple_repeat 2 72 0 201 74 0 0 chr1 150302817 150302844 -92361509 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2345 89 3 0 chr1 150303403 150303696 -92360657 - AluSc SINE Alu -13 296 3 764 167 8 15 chr1 150303975 150304107 -92360246 - FLAM_C SINE Alu -2 131 1 431 281 41 0 chr1 150304507 150304628 -92359725 - MIR SINE MIR -135 127 2 353 179 77 149 chr1 150304801 150304996 -92359357 - MIR SINE MIR 0 262 82 536 229 14 0 chr1 150306251 150306391 -92357962 - L1P LINE L1 -1878 4268 4127 914 169 6 12 chr1 150306635 150306807 -92357546 + L1PA15 LINE L1 3961 4131 -2015 5647 116 37 3 chr1 150306909 150307753 -92356600 + L1PA15 LINE L1 4309 5123 -1042 1996 124 8 0 chr1 150307753 150308020 -92356333 + AluSx SINE Alu 1 269 -43 5647 116 37 3 chr1 150308020 150309026 -92355327 + L1PA15 LINE L1 5123 6165 0 3994 97 27 14 chr1 150309202 150309834 -92354519 - Tigger4(Zombi) DNA MER2_type -230 2501 1862 638 169 19 6 chr1 150309825 150309973 -92354380 - Tigger4(Zombi) DNA MER2_type -2576 155 2 * 213 94 0 0 chr1 150310175 150310207 -92354146 + (T)n Simple_repeat Simple_repeat 1 32 0 882 184 134 17 chr1 150310207 150310386 -92353967 - AluJo SINE Alu -112 200 1 2546 20 3 0 chr1 150312658 150312954 -92351399 - L1PA3 LINE L1 0 6155 5859 21 57 0 0 chr1 150313062 150313097 -92351256 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr1 150313530 150313581 -92350772 + AT_rich Low_complexity Low_complexity 1 51 0 1101 206 25 29 chr1 150314756 150315033 -92349320 - LTR40c LTR ERVL -187 278 3 2283 138 0 3 chr1 150315694 150316006 -92348347 - AluSx SINE Alu 0 312 2 23 33 0 0 chr1 150316017 150316047 -92348306 + AT_rich Low_complexity Low_complexity 1 30 0 517 258 29 70 chr1 150316275 150316394 -92347959 - L1MC4a LINE L1 -1877 5931 5809 1369 179 50 43 chr1 150316394 150316698 -92347655 - AluJo SINE Alu 0 306 1 517 258 29 70 chr1 150316698 150316875 -92347478 - L1MC4a LINE L1 -1999 5809 5655 7007 48 46 0 chr1 150316875 150317794 -92346559 - L1PA5 LINE L1 -3 6151 5221 517 258 29 70 chr1 150317794 150317897 -92346456 - L1MC4a LINE L1 -2153 5655 5549 2223 134 132 5 chr1 150317963 150318343 -92346010 - MSTA LTR MaLR 0 428 1 2297 165 76 13 chr1 150318447 150318730 -92345623 - L1MB7 LINE L1 -9 6175 5893 495 258 27 36 chr1 150318730 150318951 -92345402 - L1PA6 LINE L1 -291 5863 5645 2243 8 4 4 chr1 150319520 150319772 -92344581 - AluYa5 SINE Alu -59 252 1 297 0 0 0 chr1 150319865 150319898 -92344455 + (TG)n Simple_repeat Simple_repeat 2 34 0 29 60 0 0 chr1 150320253 150320303 -92344050 + AT_rich Low_complexity Low_complexity 1 50 0 239 258 181 44 chr1 150320538 150320720 -92343633 + MER112 DNA MER1_type 2 208 -52 254 340 13 93 chr1 150320759 150320909 -92343444 - MIR3 SINE MIR -49 159 22 2446 71 10 7 chr1 150320956 150321264 -92343089 - AluSp SINE Alu -4 309 1 1985 150 3 0 chr1 150322265 150322571 -92341782 - AluJo SINE Alu -5 307 1 1606 167 12 0 chr1 150322771 150323023 -92341330 + AluJo SINE Alu 31 285 -27 186 43 0 0 chr1 150323023 150323046 -92341307 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 199 260 0 20 chr1 150323596 150323646 -92340707 + MIR SINE MIR 27 75 -133 22 0 0 0 chr1 150323965 150323987 -92340366 + AT_rich Low_complexity Low_complexity 1 22 0 282 143 0 0 chr1 150324582 150324631 -92339722 + (TG)n Simple_repeat Simple_repeat 2 50 0 2278 86 0 13 chr1 150324901 150325203 -92339150 + AluY SINE Alu 6 303 -8 208 357 97 32 chr1 150326024 150326425 -92337928 - L2 LINE L2 -684 2630 2204 21 36 0 0 chr1 150326973 150327001 -92337352 + AT_rich Low_complexity Low_complexity 1 28 0 2128 106 11 0 chr1 150327551 150327834 -92336519 + AluSc SINE Alu 1 286 -23 22 0 0 0 chr1 150328004 150328026 -92336327 + AT_rich Low_complexity Low_complexity 1 22 0 592 347 201 15 chr1 150328587 150329611 -92334742 - L2 LINE L2 -252 3020 1807 326 274 105 83 chr1 150329672 150329949 -92334404 - L2 LINE L2 -77 3236 2954 1005 163 43 60 chr1 150330128 150330410 -92333943 - Charlie1 DNA MER1_type -1 2760 2484 619 241 35 0 chr1 150330722 150330867 -92333486 - Charlie1 DNA MER1_type -269 2492 2343 501 291 147 26 chr1 150330948 150331254 -92333099 - L1MC/D LINE L1 -2027 5781 5439 329 287 28 0 chr1 150331260 150331368 -92332985 + L2 LINE L2 2874 2984 -329 225 108 0 0 chr1 150331395 150331432 -92332921 + L1PA11 LINE L1 6133 6169 -5 22 0 0 0 chr1 150331462 150331484 -92332869 + AT_rich Low_complexity Low_complexity 1 22 0 624 213 197 35 chr1 150331484 150331738 -92332615 + L2 LINE L2 3019 3313 0 286 308 0 0 chr1 150331859 150331937 -92332416 - L2 LINE L2 -7 3306 3229 3066 189 40 96 chr1 150332048 150332166 -92332187 - MER21B LTR ERV1 -58 805 682 1403 183 136 4 chr1 150332166 150332423 -92331930 - AluJb SINE Alu -11 291 1 3066 189 40 96 chr1 150332423 150333157 -92331196 - MER21B LTR ERV1 -181 682 1 2389 84 0 3 chr1 150334013 150334312 -92330041 - AluSg SINE Alu -12 298 1 590 302 82 82 chr1 150335301 150335931 -92328422 + L1MEd LINE L1 5 634 -5485 3241 40 5 198 chr1 150335964 150336271 -92328082 + L1PA5 LINE L1 2235 2493 -3653 881 62 0 0 chr1 150336271 150336384 -92327969 - AluY SINE Alu -2 309 197 3241 40 5 198 chr1 150336384 150336595 -92327758 + L1PA5 LINE L1 2493 2743 -3403 13830 34 5 0 chr1 150336595 150339039 -92325314 + L1PA5 LINE L1 3699 6154 0 360 244 105 80 chr1 150339048 150339372 -92324981 + L1MEd LINE L1 658 989 -5130 16162 51 1 1 chr1 150339372 150341356 -92322997 + L1P LINE L1 22 2005 -4141 3111 229 24 4 chr1 150341353 150341851 -92322502 + L1PA4 LINE L1 5640 6147 -8 * 373 234 0 24 chr1 150341859 150341983 -92322370 + L1MEd LINE L1 967 1087 -5032 696 169 22 22 chr1 150341989 150342125 -92322228 + L1MC4a LINE L1 7273 7408 -400 1335 226 58 10 chr1 150342134 150342426 -92321927 - AluJo SINE Alu -6 306 1 267 329 63 42 chr1 150342426 150342569 -92321784 + MER5A DNA MER1_type 44 189 0 447 246 223 66 chr1 150344869 150345080 -92319273 - MIR SINE MIR -6 256 13 1326 245 78 9 chr1 150345401 150345732 -92318621 - MLT1G1 LTR MaLR -5 590 237 1066 242 90 68 chr1 150346290 150346443 -92317910 - L2 LINE L2 -109 3204 3056 1583 187 3 37 chr1 150346443 150346743 -92317610 - AluJb SINE Alu -22 290 1 1066 242 90 68 chr1 150346743 150347149 -92317204 - L2 LINE L2 -257 3056 2652 419 325 42 21 chr1 150347196 150347387 -92316966 - MIR SINE MIR -57 205 11 2884 91 6 2 chr1 150349341 150349829 -92314524 + L1PB1 LINE L1 5550 6150 -1 3456 171 56 5 chr1 150349838 150350428 -92313925 - MER6 DNA MER2_type -245 620 1 191 347 32 21 chr1 150350434 150350529 -92313824 + L2 LINE L2 3177 3272 0 287 361 0 0 chr1 150350579 150350662 -92313691 + MIR SINE MIR 47 129 -133 400 293 98 18 chr1 150350669 150350833 -92313520 + L3 LINE CR1 366 542 -1035 1072 297 71 81 chr1 150350978 150351580 -92312773 + L3 LINE CR1 804 1399 -178 2094 132 0 26 chr1 150352556 150352866 -92311487 + AluJo SINE Alu 1 302 -10 25 83 0 0 chr1 150353892 150353952 -92310401 + AT_rich Low_complexity Low_complexity 1 60 0 389 264 72 0 chr1 150355618 150355743 -92308610 + MER94 DNA DNA 1 134 0 1423 298 183 34 chr1 150356569 150357703 -92306650 + L2 LINE L2 1943 3243 -70 285 29 0 0 chr1 150358271 150358305 -92306048 + (CA)n Simple_repeat Simple_repeat 2 35 0 378 0 0 0 chr1 150358367 150358409 -92305944 + (CA)n Simple_repeat Simple_repeat 2 43 0 1814 158 0 18 chr1 150359730 150360050 -92304303 - AluJo SINE Alu 0 316 2 22 70 0 0 chr1 150360313 150360356 -92303997 + AT_rich Low_complexity Low_complexity 1 43 0 663 284 56 28 chr1 150361041 150361291 -92303062 - L2 LINE L2 -37 3276 3020 445 252 124 29 chr1 150361299 150361681 -92302672 - MLT1J2 LTR MaLR -7 439 1 2260 82 20 3 chr1 150361723 150362016 -92302337 + AluY SINE Alu 1 298 -13 2388 281 155 31 chr1 150362033 150363209 -92301144 - L2 LINE L2 -337 2977 1656 224 235 212 0 chr1 150363302 150363387 -92300966 + MIR3 SINE MIR 105 207 -1 241 328 60 60 chr1 150363604 150363720 -92300633 - LTR33A LTR ERVL -347 176 61 1091 226 61 71 chr1 150364600 150365090 -92299263 + L1MEc LINE L1 1616 2100 -4296 970 173 0 24 chr1 150365091 150365259 -92299094 + FRAM SINE Alu 1 163 -13 1415 235 51 21 chr1 150365259 150365822 -92298531 + L1MEc LINE L1 2093 2631 -3584 190 310 0 52 chr1 150366479 150366537 -92297816 + L2 LINE L2 3121 3175 -97 240 35 0 0 chr1 150367544 150367573 -92296780 + (TA)n Simple_repeat Simple_repeat 2 30 0 214 307 53 0 chr1 150367754 150367829 -92296524 - MIR SINE MIR -13 249 171 319 333 154 20 chr1 150368051 150368246 -92296107 + MIR SINE MIR 2 222 -40 222 229 83 0 chr1 150368378 150368426 -92295927 - L2 LINE L2 -16 3256 3205 180 0 0 0 chr1 150368432 150368452 -92295901 + (TAGA)n Simple_repeat Simple_repeat 4 23 0 2472 171 48 13 chr1 150368734 150369295 -92295058 - MER82 DNA MER2_type 0 653 42 416 174 0 54 chr1 150370432 150370524 -92293829 - FLAM_C SINE Alu 0 143 57 988 221 111 9 chr1 150370583 150370800 -92293553 - MER8 DNA MER2_type 0 239 1 2181 108 0 3 chr1 150371529 150371826 -92292527 - AluSc SINE Alu -13 296 1 207 0 0 0 chr1 150373112 150373135 -92291218 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1353 153 19 9 chr1 150373138 150373354 -92290999 - AluJo SINE Alu -30 282 65 2446 48 0 3 chr1 150373381 150373673 -92290680 + AluY SINE Alu 1 291 -20 222 246 15 0 chr1 150375645 150375710 -92288643 + (TA)n Simple_repeat Simple_repeat 1 66 0 396 305 0 0 chr1 150376266 150376361 -92287992 - MIR SINE MIR -108 154 60 1029 117 0 6 chr1 150377713 150377876 -92286477 + L1PA13 LINE L1 6000 6161 -2 447 315 25 37 chr1 150378045 150378207 -92286146 + MIR3 SINE MIR 42 201 -7 292 175 159 0 chr1 150378459 150378522 -92285831 - MIR SINE MIR -74 188 116 210 344 111 0 chr1 150378598 150378688 -92285665 - MIR SINE MIR -161 101 2 429 333 70 0 chr1 150380135 150380264 -92284089 + L2 LINE L2 3134 3271 -1 243 234 0 62 chr1 150381361 150381425 -92282928 - Charlie1 DNA MER1_type 0 2761 2702 * 9105 189 68 10 chr1 150381405 150383399 -92280954 - Charlie1 DNA MER1_type -231 2530 422 1529 277 144 81 chr1 150383548 150384485 -92279868 - L2 LINE L2 -9 3263 2386 1864 166 3 3 chr1 150384485 150384781 -92279572 - AluSx SINE Alu -14 298 3 1529 277 144 81 chr1 150384781 150385707 -92278646 - L2 LINE L2 -886 2386 1257 281 343 41 73 chr1 150385761 150385980 -92278373 - L2 LINE L2 -52 3220 3009 363 89 0 0 chr1 150386616 150386628 -92277725 - L1MA10 LINE L1 -2 6332 6321 2892 200 77 53 chr1 150386628 150387482 -92276871 - L1ME1 LINE L1 -5 6161 5287 976 222 10 15 chr1 150387519 150387717 -92276636 - MLT1E LTR MaLR -41 552 356 202 260 115 19 chr1 150487818 150487922 -92176431 - MIR SINE MIR -39 223 110 221 344 31 21 chr1 150488499 150488595 -92175758 - L2 LINE L2 -18 3254 3158 180 295 0 108 chr1 150488822 150488961 -92175392 - L2 LINE L2 -22 3291 3168 185 403 100 3 chr1 150489158 150489468 -92174885 - L2 LINE L2 -337 2977 2638 348 255 39 20 chr1 150489647 150489749 -92174604 - MER91C DNA MER1_type -25 115 12 334 316 118 11 chr1 150490366 150490721 -92173632 - L2 LINE L2 -453 2861 2469 473 254 28 7 chr1 150491607 150491749 -92172604 + MIR SINE MIR 21 165 -97 227 354 37 0 chr1 150491975 150492073 -92172280 + MIR SINE MIR 28 130 -78 1304 160 47 54 chr1 150493190 150493532 -92170821 + MSTD LTR MaLR 1 396 0 400 298 50 39 chr1 150493568 150493749 -92170604 - MIR SINE MIR -78 184 2 311 243 33 92 chr1 150493903 150494055 -92170298 + MIR3 SINE MIR 59 201 -7 320 303 138 15 chr1 150494583 150494778 -92169575 - MIR SINE MIR -41 221 3 258 279 0 0 chr1 150494822 150494883 -92169470 - MER113 DNA MER1_type? 0 521 461 235 242 121 20 chr1 150495431 150495530 -92168823 + MER102b DNA MER1_type 233 341 0 2343 97 10 0 chr1 150495755 150496064 -92168289 + AluSx SINE Alu 1 312 0 183 371 52 0 chr1 150497218 150497315 -92167038 + L2 LINE L2 2994 3095 -177 777 188 0 8 chr1 150497317 150497445 -92166908 + FLAM_A SINE Alu 1 127 -6 1570 205 115 34 chr1 150498259 150498702 -92165651 + MLT1D LTR MaLR 27 505 0 1078 298 28 58 chr1 150499559 150500157 -92164196 + L1MEc LINE L1 34 613 -5783 754 250 40 40 chr1 150500192 150500392 -92163961 - MER63A DNA MER1_type 0 210 11 1379 202 79 102 chr1 150500405 150500876 -92163477 + MER21B LTR ERV1 4 463 -400 1555 201 105 48 chr1 150501015 150501452 -92162901 - MLT1C LTR MaLR 0 467 6 356 286 78 82 chr1 150501616 150501905 -92162448 + MLT1L LTR MaLR 2 291 -324 1961 99 0 86 chr1 150501905 150502243 -92162110 + AluSq SINE Alu 1 311 0 356 286 78 82 chr1 150502243 150502365 -92161988 + MLT1L LTR MaLR 291 412 -203 2386 90 0 13 chr1 150502710 150503020 -92161333 - AluSc SINE Alu -3 306 1 311 331 31 8 chr1 150503848 150503978 -92160375 - MIR SINE MIR -110 152 20 278 273 30 0 chr1 150503984 150504050 -92160303 - MER113 DNA MER1_type? -1 520 453 834 225 170 4 chr1 150504938 150505214 -92159139 - L1M4 LINE L1 -1830 4316 3995 375 222 68 34 chr1 150505224 150505341 -92159012 - MIR SINE MIR -74 188 68 2099 142 10 3 chr1 150505979 150506316 -92158037 - AluJb SINE Alu 0 339 1 203 278 0 42 chr1 150506346 150506418 -92157935 + L3 LINE CR1 1509 1577 0 1927 156 3 3 chr1 150506926 150507214 -92157139 + AluSx SINE Alu 1 288 -24 372 43 0 0 chr1 150507214 150507260 -92157093 + (TA)n Simple_repeat Simple_repeat 2 47 0 2713 161 50 18 chr1 150507558 150507947 -92156406 + L1MD2 LINE L1 5704 6114 -245 1337 109 275 0 chr1 150507947 150508176 -92156177 - AluSx SINE Alu -10 292 1 2713 161 50 18 chr1 150508176 150508290 -92156063 + L1MD2 LINE L1 6114 6223 -136 21 0 0 0 chr1 150508961 150508982 -92155371 + AT_rich Low_complexity Low_complexity 1 21 0 591 291 51 43 chr1 150509820 150510074 -92154279 + MLT1J2 LTR MaLR 74 329 -121 3421 46 7 16 chr1 150510177 150510614 -92153739 + L1PA7 LINE L1 5716 6148 -6 486 126 11 46 chr1 150510631 150510718 -92153635 + MLT1J2 LTR MaLR 367 450 0 185 234 21 0 chr1 150510993 150511040 -92153313 + L2 LINE L2 3258 3305 -8 2206 97 6 35 chr1 150511745 150512064 -92152289 - AluSg SINE Alu 0 310 1 316 305 21 0 chr1 150512424 150512519 -92151834 + MIR SINE MIR 35 131 -77 294 109 0 0 chr1 150512525 150512571 -92151782 - MADE1 DNA Mariner -34 46 1 376 333 12 19 chr1 150513885 150514047 -92150306 + MIR SINE MIR 46 206 -56 244 239 56 0 chr1 150514698 150514769 -92149584 - MIR SINE MIR -1 261 187 2705 147 25 8 chr1 150514779 150515249 -92149104 - L1MB4 LINE L1 0 6180 5703 575 211 37 47 chr1 150515255 150515445 -92148908 - L1MC5 LINE L1 -36 7925 7738 200 200 40 0 chr1 150515446 150515496 -92148857 - MIR SINE MIR -123 139 88 333 47 0 0 chr1 150515541 150515584 -92148769 + (TG)n Simple_repeat Simple_repeat 2 44 0 2450 82 0 0 chr1 150517420 150517726 -92146627 - AluY SINE Alu -5 306 1 1863 143 10 37 chr1 150517733 150518033 -92146320 - AluJb SINE Alu -20 292 1 2263 169 63 16 chr1 150518034 150518479 -92145874 - L1MB4 LINE L1 -40 6140 5675 189 171 0 0 chr1 150519367 150519402 -92144951 + CT-rich Low_complexity Low_complexity 2 36 0 2416 82 0 10 chr1 150520431 150520735 -92143618 - AluSg SINE Alu -9 301 1 1178 22 14 0 chr1 150521809 150521948 -92142405 + AluY SINE Alu 168 308 -3 269 236 115 6 chr1 150522141 150522254 -92142099 + MIR SINE MIR 52 172 -62 2364 97 0 0 chr1 150522322 150522620 -92141733 + AluSq SINE Alu 1 298 -15 485 214 0 54 chr1 150522741 150522853 -92141500 + MIR3 SINE MIR 93 198 -10 22 0 0 0 chr1 150522916 150522938 -92141415 + AT_rich Low_complexity Low_complexity 1 22 0 1981 117 0 91 chr1 150523034 150523375 -92140978 + AluSx SINE Alu 1 310 -2 661 219 129 24 chr1 150523726 150523936 -92140417 + MIR SINE MIR 31 262 0 189 318 0 16 chr1 150523934 150523997 -92140356 - L2 LINE L2 -2 3270 3209 * 348 234 102 147 chr1 150525658 150526120 -92138233 + L1M2 LINE L1 708 1148 -5701 864 199 0 0 chr1 150527744 150527890 -92136463 + FRAM SINE Alu 1 146 -30 495 0 0 0 chr1 150527890 150527945 -92136408 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 343 286 84 39 chr1 150527994 150528172 -92136181 - MER5A DNA MER1_type -3 186 1 488 300 52 6 chr1 150528975 150529163 -92135190 - MIR SINE MIR -56 206 20 2036 113 7 3 chr1 150529283 150529590 -92134763 - AluSp SINE Alu 0 308 1 217 284 68 27 chr1 150529960 150530034 -92134319 - MIR SINE MIR -102 160 84 296 138 169 0 chr1 150530054 150530119 -92134234 - MIR SINE MIR -11 251 176 582 237 32 51 chr1 150530264 150530420 -92133933 - MIR3 SINE MIR -20 188 36 1062 239 174 30 chr1 150530426 150530934 -92133419 - MLT1H1 LTR MaLR -1 554 23 5710 17 0 0 chr1 150531056 150531874 -92132479 - L1PA4 LINE L1 -266 5889 5072 21829 200 56 20 chr1 150531874 150537385 -92126968 - L1PA12 LINE L1 -772 6812 16 1233 246 62 57 chr1 150537580 150538108 -92126245 + L1MC5 LINE L1 5361 5891 -1917 2388 235 119 58 chr1 150538191 150538316 -92126037 + L1MC5 LINE L1 6047 6163 -1798 1691 166 7 35 chr1 150538316 150538606 -92125747 - AluJo SINE Alu -30 282 1 2388 235 119 58 chr1 150538606 150539843 -92124510 + L1MC5 LINE L1 6163 7509 -452 2334 136 26 0 chr1 150539851 150540196 -92124157 - THE1B LTR MaLR -10 354 1 917 230 71 48 chr1 150540196 150540574 -92123779 + L1MC5 LINE L1 7527 7913 -48 329 269 9 19 chr1 150541000 150541108 -92123245 - MIR3 SINE MIR -90 118 12 408 267 86 78 chr1 150541656 150541888 -92122465 - MIR SINE MIR -17 245 12 606 281 206 22 chr1 150541903 150542262 -92122091 - L2 LINE L2 -1 3312 2888 255 319 62 35 chr1 150542526 150542639 -92121714 + L3 LINE CR1 875 990 -587 348 281 123 49 chr1 150542655 150542858 -92121495 + L3 LINE CR1 1342 1559 -18 396 179 60 0 chr1 150544096 150544180 -92120173 - L1M LINE L1 -801 5373 5285 833 155 7 7 chr1 150544186 150544334 -92120019 - L1MB8 LINE L1 -1 6177 6030 1276 103 6 0 chr1 150544338 150544503 -92119850 + AluSx SINE Alu 1 166 -146 3073 150 72 53 chr1 150544503 150545372 -92118981 - L1MB8 LINE L1 -182 6002 5121 845 56 9 0 chr1 150545650 150545757 -92118596 - AluYa5/8 SINE Alu -202 108 1 985 125 0 0 chr1 150545974 150546102 -92118251 - FLAM_C SINE Alu -5 128 1 223 234 234 31 chr1 150546308 150546436 -92117917 - MER5A DNA MER1_type 0 189 36 * 332 214 230 32 chr1 150546332 150546458 -92117895 + MER5A DNA MER1_type 37 187 -2 261 192 19 0 chr1 150546468 150546520 -92117833 - MER5B DNA MER1_type 0 178 126 1528 165 33 15 chr1 150546543 150546874 -92117479 - L1MDa LINE L1 -5169 1361 992 * 2589 220 41 76 chr1 150546868 150547228 -92117125 - L1MDa LINE L1 -5802 738 416 1722 152 61 10 chr1 150547228 150547525 -92116828 - AluJb SINE Alu 0 312 1 2589 220 41 76 chr1 150547525 150547914 -92116439 - L1MDa LINE L1 -6124 416 15 387 312 32 0 chr1 150548385 150548542 -92115811 - MIR SINE MIR -16 246 85 213 350 57 8 chr1 150548782 150548905 -92115448 - L2 LINE L2 -608 2706 2578 362 286 101 0 chr1 150549011 150549130 -92115223 + L2 LINE L2 3142 3272 0 205 327 0 0 chr1 150549631 150549683 -92114670 + L2 LINE L2 3201 3252 -20 472 238 34 136 chr1 150550014 150550220 -92114133 + MIR3 SINE MIR 19 203 -5 516 263 64 23 chr1 150550837 150551008 -92113345 - MER5B DNA MER1_type 0 178 1 652 226 89 119 chr1 150551546 150551940 -92112413 - L1MC4a LINE L1 -1013 6795 6414 2240 198 77 23 chr1 150552051 150552530 -92111823 + MLT1D LTR MaLR 1 505 0 225 284 141 73 chr1 150552575 150553206 -92111147 - HAL1b LINE L1 -613 735 62 459 240 34 128 chr1 150554499 150554703 -92109650 - MIR3 SINE MIR -5 203 19 212 323 165 0 chr1 150555537 150555701 -92108652 - MIR SINE MIR -47 215 25 378 209 47 35 chr1 150555811 150555897 -92108456 - L2 LINE L2 -1 3271 3185 1830 166 13 0 chr1 150556112 150556413 -92107940 - AluJo SINE Alu -7 305 1 1661 173 87 32 chr1 150557711 150558057 -92106296 + MLT1A1 LTR MaLR 1 365 0 444 330 11 9 chr1 150558257 150558443 -92105910 + MIR SINE MIR 21 210 -52 204 387 86 0 chr1 150558687 150558780 -92105573 - L2 LINE L2 -8 3264 3164 * 375 360 40 17 chr1 150558768 150558943 -92105410 - L3 LINE CR1 -75 1502 1324 930 275 116 34 chr1 150559247 150560438 -92103915 - L1ME2 LINE L1 -248 5916 4617 223 263 0 18 chr1 150561625 150561682 -92102671 - L2 LINE L2 0 3272 3217 25 31 0 0 chr1 150561710 150561742 -92102611 + AT_rich Low_complexity Low_complexity 1 32 0 302 221 21 105 chr1 150562974 150563069 -92101284 - L2 LINE L2 0 3272 3186 27 49 0 0 chr1 150564035 150564076 -92100277 + AT_rich Low_complexity Low_complexity 1 41 0 1204 170 5 0 chr1 150564520 150564708 -92099645 - MER5A DNA MER1_type 0 189 1 2665 124 20 2 chr1 150565885 150566287 -92098066 + L1MA5A LINE L1 5888 6296 -1 409 171 13 0 chr1 150566320 150566396 -92097957 + L1PA3 LINE L1 6079 6155 0 246 262 220 7 chr1 150566561 150566702 -92097651 + L3 LINE CR1 1179 1349 -228 671 256 79 95 chr1 150566818 150567346 -92097007 + L2 LINE L2 2791 3313 0 1955 93 31 48 chr1 150567775 150568087 -92096266 - AluSg SINE Alu 0 307 1 745 234 103 26 chr1 150569273 150569585 -92094768 + L1ME4a LINE L1 5568 5903 -218 2022 144 3 3 chr1 150569592 150569928 -92094425 + AluJb SINE Alu 1 312 0 1648 186 76 37 chr1 150570003 150570357 -92093996 - MLT1A2 LTR MaLR -1 373 6 276 53 0 0 chr1 150570428 150570466 -92093887 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 403 39 19 0 chr1 150570611 150570663 -92093690 + MLT1E2 LTR MaLR 572 624 -2 14001 126 23 11 chr1 150570993 150573116 -92091237 + Tigger1 DNA MER2_type 1 2148 -270 776 111 9 0 chr1 150573126 150573234 -92091119 + Tigger1 DNA MER2_type 2310 2418 0 1491 222 12 12 chr1 150574588 150574922 -92089431 - MLT1E3 LTR MaLR 0 624 291 2302 75 0 0 chr1 150574981 150575300 -92089053 + AluY SINE Alu 1 311 0 219 394 61 19 chr1 150575507 150575817 -92088536 + L2 LINE L2 2556 2878 -436 403 304 14 22 chr1 150576107 150576245 -92088108 + MIR SINE MIR 3 139 -123 1154 81 0 7 chr1 150576358 150576507 -92087846 + AluSc SINE Alu 154 301 -8 9062 169 52 38 chr1 150576507 150578435 -92085918 + L1MC3 LINE L1 5824 7778 -7 8038 28 10 0 chr1 150578437 150579693 -92084660 - L1PA4 LINE L1 0 6155 4892 725 112 172 0 chr1 150579725 150579841 -92084512 + AluSx SINE Alu 9 144 -169 442 90 15 0 chr1 150579841 150579908 -92084445 + MADE1 DNA Mariner 12 79 -1 932 164 0 41 chr1 150579912 150580083 -92084270 + AluSx SINE Alu 127 290 -20 233 0 62 0 chr1 150580271 150580303 -92084050 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 225 307 134 0 chr1 150581701 150581828 -92082525 + MIR3 SINE MIR 41 184 -24 2087 107 9 50 chr1 150582050 150582368 -92081985 - AluSp SINE Alu -8 305 1 993 245 57 4 chr1 150582551 150582796 -92081557 + MIR SINE MIR 5 262 0 260 334 86 62 chr1 150582799 150583355 -92080998 - L2 LINE L2 -42 3230 2668 371 244 13 0 chr1 150584846 150584924 -92079429 + MIR SINE MIR 158 236 -26 224 314 0 0 chr1 150586165 150586235 -92078118 - MIR SINE MIR -17 245 176 198 245 39 142 chr1 150586390 150586545 -92077808 - L2 LINE L2 -189 3083 2945 251 333 104 73 chr1 150586673 150587154 -92077199 - L2 LINE L2 -560 2754 2259 666 261 27 11 chr1 150587376 150587564 -92076789 + MIR SINE MIR 46 236 -26 2310 92 10 0 chr1 150587639 150587932 -92076421 - AluSp SINE Alu -16 297 2 1827 197 33 0 chr1 150588243 150588608 -92075745 + L1MB4 LINE L1 5787 6163 -17 548 242 49 86 chr1 150589205 150589449 -92074904 + L2 LINE L2 2845 3079 -234 376 259 56 0 chr1 150589450 150589558 -92074795 + L2 LINE L2 3197 3310 -3 2031 177 13 18 chr1 150589771 150590156 -92074197 + L1MB8 LINE L1 5760 6142 -36 350 202 1 0 chr1 150590661 150590745 -92073608 + L1ME LINE L1 5509 5590 -531 233 184 102 31 chr1 150590728 150590826 -92073527 + L1MC4 LINE L1 6599 6703 -1339 * 278 282 64 45 chr1 150590852 150591054 -92073299 + L1ME LINE L1 5611 5816 -305 2409 115 35 41 chr1 150591120 150591486 -92072867 - THE1B LTR MaLR 0 364 1 189 0 0 0 chr1 150591770 150591791 -92072562 + (T)n Simple_repeat Simple_repeat 1 21 0 477 145 0 0 chr1 150591847 150591923 -92072430 - AluSx SINE Alu -1 310 235 1353 109 49 0 chr1 150591923 150592106 -92072247 - AluSx SINE Alu -120 192 1 316 242 116 0 chr1 150592110 150592205 -92072148 - MIR3 SINE MIR -41 167 62 199 276 86 0 chr1 150592239 150592297 -92072056 + MIR SINE MIR 62 124 -84 278 246 0 0 chr1 150592323 150592380 -92071973 + MIR SINE MIR 205 261 -1 23 33 0 0 chr1 150593135 150593165 -92071188 + AT_rich Low_complexity Low_complexity 1 30 0 2328 127 3 6 chr1 150593286 150593626 -92070727 + L1PB3 LINE L1 5814 6152 -2 2189 104 3 3 chr1 150593677 150593974 -92070379 - AluSq SINE Alu -16 297 1 2222 101 7 0 chr1 150593974 150594281 -92070072 - L1P5 LINE L1 -366 5788 5480 2247 119 0 0 chr1 150594282 150594585 -92069768 - AluSx SINE Alu -9 303 1 4377 171 8 13 chr1 150594585 150595456 -92068897 - L1 LINE L1 -1154 4992 4126 980 218 17 14 chr1 150595472 150595703 -92068650 - L1MC4 LINE L1 -354 7549 7197 * 2075 223 60 58 chr1 150595696 150596399 -92067954 - L1MC4 LINE L1 -748 5398 5176 356 297 36 46 chr1 150596439 150596622 -92067731 - L1MC4 LINE L1 -33 8009 7827 2900 113 28 19 chr1 150596622 150597046 -92067307 - MSTA LTR MaLR 0 428 1 356 297 36 46 chr1 150597046 150597081 -92067272 - L1MC4 LINE L1 -215 7827 7793 350 335 39 45 chr1 150597111 150597442 -92066911 - L1MC4 LINE L1 -939 5207 4879 257 300 83 17 chr1 150598762 150598882 -92065471 + L2 LINE L2 3186 3313 0 608 240 29 41 chr1 150599338 150599509 -92064844 - MIR SINE MIR -84 178 10 212 294 18 73 chr1 150599956 150600065 -92064288 - MER5B DNA MER1_type -24 154 52 278 326 43 35 chr1 150601020 150601161 -92063192 + MIR SINE MIR 75 216 -46 1943 135 17 3 chr1 150603372 150603669 -92060684 + AluSx SINE Alu 1 301 -11 309 341 78 34 chr1 150604104 150604283 -92060070 + L2 LINE L2 2904 3090 -182 27 29 0 0 chr1 150605052 150605086 -92059267 + AT_rich Low_complexity Low_complexity 1 34 0 195 259 56 70 chr1 150605275 150605418 -92058935 - L2 LINE L2 -188 3084 2944 25 0 0 0 chr1 150605435 150605460 -92058893 + AT_rich Low_complexity Low_complexity 1 25 0 190 347 137 0 chr1 150605546 150605641 -92058712 - L2 LINE L2 -19 3294 3187 633 211 28 28 chr1 150607286 150607428 -92056925 - MLT1F1 LTR MaLR -13 554 413 404 217 33 0 chr1 150608037 150608129 -92056224 + MER81 DNA DNA 20 114 0 4235 127 39 3 chr1 150608759 150609523 -92054830 - L1PA16 LINE L1 -19 6147 5194 346 325 113 26 chr1 150609611 150609762 -92054591 - MIR SINE MIR -48 214 51 257 314 35 76 chr1 150609804 150609976 -92054377 + MIR3 SINE MIR 23 187 -21 298 234 76 83 chr1 150610453 150610598 -92053755 - L2 LINE L2 -38 3234 3091 213 321 0 0 chr1 150610648 150610704 -92053649 - MIR SINE MIR -48 214 159 1112 163 160 102 chr1 150610705 150611068 -92053285 - L1M4 LINE L1 -2032 4114 3731 1466 173 0 28 chr1 150611955 150612210 -92052143 - AluJb SINE Alu -64 248 1 212 296 34 34 chr1 150612218 150612306 -92052047 - MIR SINE MIR -74 188 101 326 296 125 26 chr1 150612729 150612881 -92051472 + MIR3 SINE MIR 25 191 -17 216 0 0 0 chr1 150613017 150613041 -92051312 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 193 195 73 0 chr1 150614119 150614160 -92050193 + MIR SINE MIR 108 151 -57 541 310 62 60 chr1 150614353 150614856 -92049497 - L1ME LINE L1 -5486 584 81 1047 153 139 0 chr1 150614860 150615062 -92049291 - L1MC2 LINE L1 -13 6331 6102 419 239 11 0 chr1 150615065 150615157 -92049196 - L1ME LINE L1 -5972 98 6 2484 67 0 10 chr1 150615193 150615505 -92048848 + AluY SINE Alu 1 309 -2 634 316 138 31 chr1 150616550 150617194 -92047159 - L2 LINE L2 -194 3078 2358 26 0 0 0 chr1 150617954 150617980 -92046373 + AT_rich Low_complexity Low_complexity 1 26 0 7114 158 26 27 chr1 150617980 150619883 -92044470 - L1MA3 LINE L1 0 6305 4408 863 74 161 47 chr1 150620734 150620883 -92043470 + MLT1D LTR MaLR 338 503 -2 280 234 125 0 chr1 150621945 150622009 -92042344 - L2 LINE L2 -2 3270 3199 212 281 78 0 chr1 150622073 150622137 -92042216 - L2 LINE L2 -257 3056 2988 209 353 95 9 chr1 150622341 150622457 -92041896 - MIR SINE MIR -67 141 16 3312 157 46 3 chr1 150623070 150623675 -92040678 + L1MB2 LINE L1 5539 6169 -2 326 256 49 79 chr1 150624758 150624961 -92039392 + MIR SINE MIR 36 232 -30 262 232 61 12 chr1 150625347 150625460 -92038893 + MIR SINE MIR 101 216 -46 21 36 0 0 chr1 150625515 150625543 -92038810 + AT_rich Low_complexity Low_complexity 1 28 0 333 135 0 63 chr1 150626218 150626329 -92038024 + (TA)n Simple_repeat Simple_repeat 1 104 0 264 253 0 0 chr1 150626334 150626413 -92037940 + L1MC4 LINE L1 6614 6692 -1350 242 182 39 78 chr1 150626414 150626491 -92037862 - LTR66 LTR ERVL -171 439 366 703 144 0 0 chr1 150626735 150626839 -92037514 + AluSq/x SINE Alu 14 117 -196 1954 167 91 3 chr1 150627651 150628035 -92036318 - MSTA LTR MaLR -9 419 2 1368 240 52 26 chr1 150628431 150628818 -92035535 - MLT2C1 LTR ERVL 0 397 1 318 186 20 191 chr1 150629314 150629513 -92034840 - L2 LINE L2 -44 3269 3105 268 213 0 0 chr1 150629562 150629609 -92034744 + MIR SINE MIR 78 124 -84 441 240 213 0 chr1 150629760 150629910 -92034443 + MER5A DNA MER1_type 8 189 0 203 372 41 8 chr1 150683483 150683604 -91980749 + MIR3 SINE MIR 2 126 -82 2299 99 3 0 chr1 150683704 150683998 -91980355 + AluSx SINE Alu 1 295 -17 376 270 88 29 chr1 150685272 150685409 -91978944 + MER5A DNA MER1_type 1 145 -44 3102 220 159 6 chr1 150685437 150686304 -91978049 + L1MDa LINE L1 17 1016 -5524 258 170 57 0 chr1 150686404 150686457 -91977896 + L1MDa LINE L1 1313 1368 -5172 381 298 98 82 chr1 150686713 150687089 -91977264 + L3 LINE CR1 931 1312 -265 210 37 0 0 chr1 150687294 150687321 -91977032 + (TG)n Simple_repeat Simple_repeat 1 27 0 1678 193 38 20 chr1 150688707 150689049 -91975304 + MLT1A1 LTR MaLR 7 354 -11 233 302 21 42 chr1 150689495 150689591 -91974762 - L2 LINE L2 -40 3232 3139 296 387 16 0 chr1 150689729 150689853 -91974500 + L2 LINE L2 3147 3272 0 476 185 222 0 chr1 150690185 150690199 -91974154 - L1MA10 LINE L1 0 6334 6321 2724 197 84 91 chr1 150690199 150690985 -91973368 - L1ME1 LINE L1 -5 6161 5408 1917 155 7 10 chr1 150690985 150691282 -91973071 - AluJb SINE Alu -16 296 1 2724 197 84 91 chr1 150691282 150692006 -91972347 - L1ME1 LINE L1 -758 5408 4681 285 29 0 0 chr1 150692320 150692354 -91971999 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 50 0 0 chr1 150692576 150692616 -91971737 + AT_rich Low_complexity Low_complexity 1 40 0 1084 179 24 24 chr1 150692654 150692866 -91971487 - L1MB4 LINE L1 0 6180 5969 382 310 128 74 chr1 150693090 150693524 -91970829 - L3 LINE CR1 -351 1226 817 1823 258 92 40 chr1 150693524 150694121 -91970232 - MLT2E LTR ERVL 0 628 1 382 310 128 74 chr1 150694121 150694199 -91970154 - L3 LINE CR1 -760 817 745 1770 136 0 85 chr1 150694199 150694516 -91969837 + AluSx SINE Alu 6 295 -17 382 310 128 74 chr1 150694516 150694586 -91969767 - L3 LINE CR1 -832 745 611 2317 89 0 26 chr1 150695060 150695373 -91968980 + AluY SINE Alu 1 305 -6 186 97 0 32 chr1 150695504 150695535 -91968818 - L2 LINE L2 -47 3225 3196 448 191 9 45 chr1 150695541 150695651 -91968702 - LTR41 LTR ERVL -6 767 662 457 247 51 32 chr1 150696148 150696306 -91968047 - LTR41 LTR ERVL -603 170 10 376 295 38 48 chr1 150696354 150696553 -91967800 - MIR SINE MIR -51 211 13 216 200 0 0 chr1 150699082 150699122 -91965231 + CT-rich Low_complexity Low_complexity 2 41 0 8367 18 0 0 chr1 150699124 150700273 -91964080 - L1PA2 LINE L1 0 6155 5007 3228 32 0 0 chr1 150700273 150700648 -91963705 + L1P LINE L1 3740 4114 -2032 1769 239 20 88 chr1 150700920 150701367 -91962986 - MLT1E2 LTR MaLR -25 601 204 2015 153 0 6 chr1 150701367 150701680 -91962673 + AluJb SINE Alu 1 311 -1 1769 239 20 88 chr1 150701680 150701838 -91962515 - MLT1E2 LTR MaLR -422 204 37 248 238 111 0 chr1 150702764 150702827 -91961526 - MLT1C LTR MaLR -60 407 338 * 355 217 120 0 chr1 150702814 150702906 -91961447 + MLT1C LTR MaLR 12 114 -353 1971 133 7 3 chr1 150703630 150703924 -91960429 + AluSq SINE Alu 1 295 -18 5877 178 31 24 chr1 150704102 150704970 -91959383 + L1MA8 LINE L1 815 1676 -4598 2284 98 0 7 chr1 150704970 150705265 -91959088 + AluSx SINE Alu 1 293 -19 5877 178 31 24 chr1 150705265 150705522 -91958831 + L1MA8 LINE L1 1676 1930 -4344 4261 116 12 8 chr1 150705522 150706118 -91958235 + LTR43 LTR ERV1 5 602 0 5877 178 31 24 chr1 150706118 150707100 -91957253 + L1MA8 LINE L1 1930 6272 -2 2510 50 0 3 chr1 150707167 150707465 -91956888 + AluSq SINE Alu 1 297 -16 1002 254 31 31 chr1 150707481 150707665 -91956688 - Charlie6 DNA MER1_type -1120 2380 2194 2139 108 10 0 chr1 150707665 150707970 -91956383 + AluY SINE Alu 4 311 0 1002 254 31 31 chr1 150707970 150708076 -91956277 - Charlie6 DNA MER1_type -1305 2195 2090 2011 132 0 7 chr1 150708077 150708380 -91955973 + AluSx SINE Alu 1 301 -11 5841 156 18 17 chr1 150708389 150709574 -91954779 - L1MA3 LINE L1 0 6305 5114 449 235 61 0 chr1 150710308 150710406 -91953947 + L2 LINE L2 3192 3295 -18 223 346 0 0 chr1 150712124 150712202 -91952151 + L2 LINE L2 2980 3057 -215 240 111 0 0 chr1 150712469 150712505 -91951848 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1493 169 107 65 chr1 150712905 150713337 -91951016 - LTR7 LTR ERV1 0 450 1 208 316 0 0 chr1 150713705 150713762 -91950591 + (CATA)n Simple_repeat Simple_repeat 2 58 0 626 354 103 19 chr1 150714450 150715329 -91949024 + L2 LINE L2 1537 2489 -825 290 328 50 17 chr1 150715527 150715646 -91948707 - MIR SINE MIR -56 152 30 245 279 35 0 chr1 150715995 150716081 -91948272 + LTR33 LTR ERVL 2 90 -431 386 125 125 23 chr1 150716196 150716284 -91948069 + LTR33 LTR ERVL 425 521 0 2525 65 0 0 chr1 150716950 150717257 -91947096 + AluSc SINE Alu 1 307 -2 2278 54 0 0 chr1 150717381 150717661 -91946692 - L1P LINE L1 -1067 5079 4800 3964 40 0 0 chr1 150717661 150718108 -91946245 + L1PA5 LINE L1 5706 6154 0 189 0 0 0 chr1 150718108 150718129 -91946224 + (TA)n Simple_repeat Simple_repeat 2 22 0 1726 192 3 3 chr1 150718131 150718439 -91945914 + L1PA16 LINE L1 5841 6148 -18 1785 205 55 35 chr1 150719362 150719815 -91944538 + MLT1C LTR MaLR 6 467 0 787 175 58 35 chr1 150719820 150719991 -91944362 + MIR SINE MIR 75 249 -13 345 244 176 17 chr1 150720032 150720151 -91944202 - MIR SINE MIR -14 248 111 252 0 0 0 chr1 150720793 150720821 -91943532 + (T)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr1 150721643 150721673 -91942680 + AT_rich Low_complexity Low_complexity 1 30 0 245 345 35 17 chr1 150722411 150722527 -91941826 - MIR SINE MIR -58 204 87 313 98 0 0 chr1 150722786 150722827 -91941526 - MLT2C2 LTR ERVL -7 457 417 1249 204 40 50 chr1 150722883 150723206 -91941147 - MLT2B1 LTR ERVL -40 480 161 498 369 66 4 chr1 150723689 150723933 -91940420 + L3 LINE CR1 46 304 -1273 519 348 92 6 chr1 150723959 150724275 -91940078 + L3 LINE CR1 842 1184 -393 * 575 320 58 25 chr1 150724255 150724505 -91939848 - MIR SINE MIR -6 256 1 355 330 25 49 chr1 150724505 150724587 -91939766 + L3 LINE CR1 1148 1231 -346 1186 99 29 0 chr1 150724587 150724758 -91939595 + L1PA10 LINE L1 5991 6166 -2 355 330 25 49 chr1 150724758 150724874 -91939479 + L3 LINE CR1 1231 1341 -236 514 291 113 26 chr1 150724888 150725118 -91939235 - MIR SINE MIR -11 251 2 285 367 10 0 chr1 150725128 150725226 -91939127 + L3 LINE CR1 1350 1448 -129 192 77 0 0 chr1 150725299 150725325 -91939028 + (TTG)n Simple_repeat Simple_repeat 2 27 0 683 181 8 31 chr1 150725604 150725731 -91938622 + AluSg/x SINE Alu 120 243 -69 216 97 0 0 chr1 150725731 150725762 -91938591 + (GA)n Simple_repeat Simple_repeat 2 32 0 228 128 26 0 chr1 150726674 150726713 -91937640 - L2 LINE L2 -31 3241 3202 657 350 70 31 chr1 150726972 150727515 -91936838 - L2 LINE L2 -516 2798 2235 386 287 118 2 chr1 150727829 150727994 -91936359 - MIR SINE MIR -63 145 16 1125 246 158 42 chr1 150728271 150728875 -91935478 + L2 LINE L2 2636 3312 -1 231 299 206 0 chr1 150730027 150730124 -91934229 + MIR SINE MIR 32 148 -60 292 177 101 13 chr1 150730202 150730281 -91934072 - MER103 DNA DNA -78 88 3 459 216 81 97 chr1 150731094 150731279 -91933074 - MIR SINE MIR -21 241 60 713 295 44 0 chr1 150732520 150732771 -91931582 - MIR SINE MIR 0 262 1 309 334 87 6 chr1 150732896 150733067 -91931286 - MIR SINE MIR -50 212 30 436 351 15 0 chr1 150733908 150734039 -91930314 - MIR3 SINE MIR -34 174 42 421 175 125 0 chr1 150735022 150735102 -91929251 + 5S rRNA rRNA 1 90 -31 22 0 0 0 chr1 150735774 150735796 -91928557 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 150736606 150736633 -91927720 + AT_rich Low_complexity Low_complexity 1 27 0 319 164 49 0 chr1 150736930 150736991 -91927362 - MIR SINE MIR -4 258 195 236 194 56 0 chr1 150740461 150740533 -91923820 + L1ME4a LINE L1 6041 6116 -5 1786 133 7 52 chr1 150740792 150741100 -91923253 + AluSx SINE Alu 1 294 -18 351 330 39 35 chr1 150741178 150741381 -91922972 + L1M4 LINE L1 4220 4423 -1723 342 304 0 0 chr1 150741410 150741512 -91922841 + L1M4 LINE L1 4487 4588 -1558 2600 27 0 0 chr1 150741535 150741834 -91922519 - L1PA2 LINE L1 0 6155 5857 393 259 22 22 chr1 150741859 150741994 -91922359 + L1MC4a LINE L1 2952 3086 -3060 782 303 70 0 chr1 150742023 150742267 -91922086 + MIR SINE MIR 2 262 0 588 290 54 60 chr1 150742473 150742825 -91921528 + L1MC4a LINE L1 5558 5907 -1901 208 338 0 0 chr1 150742872 150742940 -91921413 + (TA)n Simple_repeat Simple_repeat 2 69 0 198 239 0 43 chr1 150744565 150744611 -91919742 - L2 LINE L2 -1 3312 3269 1276 132 0 80 chr1 150745224 150745284 -91919069 - MLT2D LTR ERVL -183 231 168 2347 81 0 3 chr1 150745284 150745591 -91918762 + AluSp SINE Alu 2 307 -6 1276 132 0 80 chr1 150745591 150745781 -91918572 - MLT2D LTR ERVL -246 168 1 360 267 315 0 chr1 150745863 150746028 -91918325 + MIR SINE MIR 33 249 -13 209 182 273 0 chr1 150746109 150746164 -91918189 + MIR3 SINE MIR 128 197 -11 730 206 76 16 chr1 150747032 150747216 -91917137 - L1MA9 LINE L1 -147 6165 5971 237 244 44 56 chr1 150747221 150747245 -91917108 + MIR SINE MIR 174 197 -65 1490 137 140 25 chr1 150747245 150747567 -91916786 + MER46B DNA MER2_type 1 234 -2 237 244 44 56 chr1 150747567 150747632 -91916721 + MIR SINE MIR 197 262 0 296 307 35 82 chr1 150747907 150748223 -91916130 + L2 LINE L2 1544 1844 -1470 2040 129 3 0 chr1 150748441 150748736 -91915617 - AluSx SINE Alu -16 296 1 1615 209 94 6 chr1 150748888 150749227 -91915126 - MLT1A2 LTR MaLR -5 369 1 387 313 93 35 chr1 150749227 150749540 -91914813 + L2 LINE L2 2284 2614 -700 210 286 48 0 chr1 150751091 150751154 -91913199 - MIR3 SINE MIR -47 161 96 183 310 56 0 chr1 150757676 150757747 -91906606 - MIR SINE MIR -97 165 91 300 207 52 0 chr1 150758372 150758430 -91905923 - MIR SINE MIR -55 153 93 2006 110 51 0 chr1 150758540 150758832 -91905521 + AluSq SINE Alu 1 307 -6 4600 189 20 6 chr1 150759323 150760123 -91904230 - MER21B LTR ERV1 -52 811 1 279 203 0 0 chr1 150761406 150761465 -91902888 + (TG)n Simple_repeat Simple_repeat 1 59 0 276 333 117 53 chr1 150762087 150762258 -91902095 - L3 LINE CR1 -4 1573 1392 180 286 14 29 chr1 150762260 150762330 -91902023 - L2 LINE L2 -7 3265 3197 * 185 296 78 70 chr1 150762305 150762420 -91901933 + L2 LINE L2 3155 3270 -2 570 307 98 4 chr1 150762618 150762843 -91901510 - MIR SINE MIR -10 252 7 255 125 0 0 chr1 150764797 150764837 -91899516 + (A)n Simple_repeat Simple_repeat 1 40 0 206 32 32 0 chr1 150765426 150765457 -91898896 + (TG)n Simple_repeat Simple_repeat 2 33 0 1195 148 74 5 chr1 150767056 150767259 -91897094 + MER20 DNA MER1_type 1 217 -2 1756 132 30 17 chr1 150767374 150767670 -91896683 - AluJb SINE Alu -12 300 1 1559 157 3 24 chr1 150767756 150768050 -91896303 + AluJb SINE Alu 15 302 -10 316 319 163 12 chr1 150768444 150768610 -91895743 + MIR SINE MIR 38 228 -34 679 172 153 0 chr1 150770053 150770216 -91894137 - MER5A DNA MER1_type 0 189 2 654 221 152 13 chr1 150772361 150772519 -91891834 - MER5A DNA MER1_type 0 189 10 854 116 0 0 chr1 150772721 150772842 -91891511 + AluSp/q SINE Alu 177 297 -16 742 202 36 123 chr1 150773621 150773662 -91890691 - L1MC4 LINE L1 -1 8041 7998 1983 126 0 17 chr1 150773662 150773964 -91890389 + AluSx SINE Alu 1 297 -15 742 202 36 123 chr1 150773964 150774174 -91890179 - L1MC4 LINE L1 -44 7998 7812 290 279 81 27 chr1 150774780 150774891 -91889462 + MIR SINE MIR 17 133 -75 206 261 78 52 chr1 150775836 150775951 -91888402 - L2 LINE L2 -4 3309 3192 249 323 71 10 chr1 150777218 150777317 -91887036 - L2 LINE L2 -22 3250 3146 377 283 40 18 chr1 150777421 150777612 -91886741 + MIR3 SINE MIR 3 197 -65 484 309 64 0 chr1 150778813 150779001 -91885352 - MIR SINE MIR -15 247 48 207 200 0 20 chr1 150779010 150779060 -91885293 - MER5B DNA MER1_type -129 49 1 272 276 50 118 chr1 150786722 150787138 -91877215 + L2 LINE L2 2880 3267 -5 213 314 50 16 chr1 150787564 150787685 -91876668 - MIR SINE MIR -12 250 126 191 243 87 29 chr1 150787736 150787839 -91876514 - MIR SINE MIR -90 172 64 193 182 55 36 chr1 150788018 150788073 -91876280 - MIR3 SINE MIR -29 179 124 424 273 36 16 chr1 150788117 150788256 -91876097 - MIR SINE MIR -62 146 52 609 14 0 0 chr1 150788533 150788603 -91875750 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 221 0 0 33 chr1 150788893 150788923 -91875430 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 281 266 112 52 chr1 150788995 150789228 -91875125 + HAL1 LINE L1 1370 1616 -891 341 155 0 0 chr1 150789279 150789337 -91875016 - L1MA8 LINE L1 -138 6153 6096 227 299 76 10 chr1 150789738 150789935 -91874418 + L1M4 LINE L1 2110 2319 -3827 225 197 14 109 chr1 150789961 150790108 -91874245 + A-rich Low_complexity Low_complexity 3 135 0 521 284 180 48 chr1 150790393 150791005 -91873348 + L1M4 LINE L1 2786 3316 -2830 222 37 0 0 chr1 150791005 150791032 -91873321 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 521 284 180 48 chr1 150791032 150791127 -91873226 + L1M4 LINE L1 3316 3397 -2749 2145 115 3 3 chr1 150791127 150791415 -91872938 - AluSx SINE Alu -24 288 1 521 284 180 48 chr1 150791415 150792399 -91871954 + L1M4 LINE L1 3397 4702 -1444 221 275 202 0 chr1 150793175 150793284 -91871069 - MIR3 SINE MIR -45 163 33 2700 91 0 0 chr1 150795864 150796216 -91868137 - L1PA11 LINE L1 -9 6165 5814 726 50 1 3 chr1 150796379 150796483 -91867870 - L1PA11 LINE L1 -343 5811 5709 2312 88 3 50 chr1 150796654 150796973 -91867380 - AluY SINE Alu -7 304 1 2085 110 11 4 chr1 150797035 150797316 -91867037 + AluSx SINE Alu 1 283 -29 1047 182 62 90 chr1 150797719 150798108 -91866245 - L1MD3 LINE L1 0 8041 7678 2275 80 0 26 chr1 150798599 150798912 -91865441 + AluSc SINE Alu 1 305 -4 1292 76 0 0 chr1 150799282 150799439 -91864914 - AluSg/x SINE Alu -17 295 139 3786 147 80 42 chr1 150799439 150799577 -91864776 + L1MA8 LINE L1 5459 5590 -701 2509 76 0 0 chr1 150799577 150799880 -91864473 + AluSg SINE Alu 1 303 -7 294 29 0 0 chr1 150799880 150799915 -91864438 + (TA)n Simple_repeat Simple_repeat 1 35 0 3786 147 80 42 chr1 150799915 150800070 -91864283 + L1MA8 LINE L1 5590 5738 -553 369 0 0 0 chr1 150800070 150800111 -91864242 + (CA)n Simple_repeat Simple_repeat 2 42 0 3786 147 80 42 chr1 150800111 150800422 -91863931 + L1MA8 LINE L1 5738 6105 -186 2212 120 0 0 chr1 150800422 150800722 -91863631 + AluSx SINE Alu 1 300 -12 3786 147 80 42 chr1 150800722 150800916 -91863437 + L1MA8 LINE L1 6105 6290 -1 2972 230 68 24 chr1 150801026 150801804 -91862549 + L1ME1 LINE L1 5350 6161 -5 339 240 160 73 chr1 150802567 150803005 -91861348 + L1ME4a LINE L1 5634 6109 -12 880 84 0 23 chr1 150803518 150803649 -91860704 - MER11A LTR ERVK 0 1266 1139 228 318 71 19 chr1 150803809 150803963 -91860390 + MIR SINE MIR 72 233 -29 515 259 15 7 chr1 150804173 150804308 -91860045 + L2 LINE L2 3177 3312 -1 205 292 267 17 chr1 150804424 150804544 -91859809 + L2 LINE L2 3123 3272 0 2438 90 0 10 chr1 150804772 150805084 -91859269 - AluSc SINE Alu 0 309 1 2028 153 0 3 chr1 150805196 150805503 -91858850 + AluJo SINE Alu 1 306 -6 2031 115 14 7 chr1 150805948 150806244 -91858109 - AluSx SINE Alu -14 298 1 2828 159 4 4 chr1 150806371 150806830 -91857523 + MER31A LTR ERV1 27 485 0 2454 97 3 0 chr1 150807014 150807324 -91857029 - AluSp SINE Alu -2 311 1 2190 132 3 0 chr1 150807328 150807624 -91856729 - AluSx SINE Alu -15 297 1 1448 253 73 42 chr1 150809682 150810282 -91854071 + L1MC4a LINE L1 5391 6009 -1799 2048 135 0 0 chr1 150810374 150810675 -91853678 - AluSx SINE Alu 0 301 1 2407 64 0 0 chr1 150810713 150811018 -91853335 - AluY SINE Alu 0 305 1 411 272 0 0 chr1 150811310 150811402 -91852951 + MER81 DNA DNA 1 92 -22 320 200 0 0 chr1 150811582 150811632 -91852721 - MER58 DNA MER1_type -2143 277 228 514 233 308 17 chr1 150811656 150811896 -91852457 + L1MC4a LINE L1 6644 7038 -1004 270 188 72 29 chr1 150811918 150811987 -91852366 + MER77 LTR ERV1 41 112 -493 957 85 28 23 chr1 150812586 150812635 -91851718 + (GAAA)n Simple_repeat Simple_repeat 1 227 0 957 85 28 23 chr1 150812635 150812812 -91851541 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 261 325 40 83 chr1 150812935 150813163 -91851190 + MLT1K LTR MaLR 353 570 -18 1613 133 44 44 chr1 150813603 150813979 -91850374 - MSTA LTR MaLR -7 368 1 350 279 125 15 chr1 150813982 150814118 -91850235 + MIR SINE MIR 39 189 -73 485 313 30 67 chr1 150814193 150814493 -91849860 + MLT1L LTR MaLR 320 608 -7 2016 140 3 3 chr1 150814937 150815230 -91849123 - AluSx SINE Alu -19 293 1 22 0 0 0 chr1 150815496 150815518 -91848835 + AT_rich Low_complexity Low_complexity 1 22 0 4781 55 2 2 chr1 150815729 150816312 -91848041 + LTR14C LTR ERVK 5 587 0 1920 234 19 84 chr1 150816526 150816998 -91847355 - MLT1E2 LTR MaLR 0 626 204 2031 153 0 6 chr1 150816998 150817311 -91847042 + AluJb SINE Alu 1 311 -1 1920 234 19 84 chr1 150817311 150817469 -91846884 - MLT1E2 LTR MaLR -422 204 37 251 238 111 0 chr1 150818395 150818458 -91845895 - MLT1C LTR MaLR -60 407 338 * 356 217 120 0 chr1 150818445 150818537 -91845816 + MLT1C LTR MaLR 12 114 -353 1990 133 7 3 chr1 150819261 150819555 -91844798 + AluSq SINE Alu 1 295 -18 5799 157 22 12 chr1 150819733 150820601 -91843752 + L1MA8 LINE L1 4521 5379 -912 2305 98 0 7 chr1 150820601 150820896 -91843457 + AluSx SINE Alu 1 293 -19 5799 157 22 12 chr1 150820896 150821153 -91843200 + L1MA8 LINE L1 5379 5632 -659 4057 116 12 8 chr1 150821153 150821749 -91842604 + LTR43 LTR ERV1 5 602 0 5799 157 22 12 chr1 150821749 150822371 -91841982 + L1MA8 LINE L1 5632 6289 -2 494 329 34 48 chr1 150822377 150822798 -91841555 + L1ME3A LINE L1 986 1412 -4984 2626 54 0 3 chr1 150822798 150823112 -91841241 + AluSq SINE Alu 1 313 0 494 329 34 48 chr1 150823112 150823218 -91841135 + L1ME3A LINE L1 1412 1518 -4878 2570 62 0 0 chr1 150823218 150823526 -91840827 + AluY SINE Alu 1 308 -3 494 329 34 48 chr1 150823526 150823681 -91840672 + L1ME3A LINE L1 1518 1659 -4737 747 268 58 33 chr1 150823844 150824351 -91840002 + L1ME3A LINE L1 2074 2554 -3661 2361 103 3 0 chr1 150824355 150824657 -91839696 + AluSq SINE Alu 1 303 -10 267 228 65 11 chr1 150824733 150824825 -91839528 + L1ME3A LINE L1 4527 4623 -1592 297 82 41 0 chr1 150824832 150824881 -91839472 + L1PB1 LINE L1 6101 6151 0 1698 140 53 57 chr1 150824953 150825253 -91839100 - AluJb SINE Alu -13 299 1 1379 190 92 7 chr1 150825254 150825538 -91838815 - AluJo SINE Alu -4 308 1 2685 258 61 52 chr1 150825569 150826024 -91838329 + L1ME3A LINE L1 4691 5140 -1099 2476 72 3 0 chr1 150826024 150826330 -91838023 + AluSp SINE Alu 2 308 -5 2685 258 61 52 chr1 150826330 150826829 -91837524 + L1ME3A LINE L1 5140 5633 -606 1891 137 34 14 chr1 150826829 150827121 -91837232 - AluSx SINE Alu -14 298 1 2685 258 61 52 chr1 150827121 150827704 -91836649 + L1ME3A LINE L1 5633 6231 -8 189 107 0 0 chr1 150827827 150827855 -91836498 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2166 114 13 7 chr1 150828121 150828428 -91835925 + AluSx SINE Alu 1 309 -3 691 299 27 45 chr1 150828625 150829029 -91835324 + L1ME4a LINE L1 5550 5946 -175 248 122 122 0 chr1 150829297 150829338 -91835015 + AluSx SINE Alu 1 46 -256 4111 110 97 152 chr1 150829338 150830802 -91833551 + pTR5 LTR ERV1 750 2438 0 1741 130 7 7 chr1 150830805 150831074 -91833279 + AluSx SINE Alu 31 299 -13 375 327 120 30 chr1 150831617 150831917 -91832436 - L1M4 LINE L1 -1095 6470 6144 650 346 52 6 chr1 150832047 150832376 -91831977 + MER93a LTR ERV1 59 402 0 404 269 68 36 chr1 150832603 150832912 -91831441 - L1M4 LINE L1 -1738 5827 5509 203 59 0 29 chr1 150832912 150832946 -91831407 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 586 143 20 20 chr1 150832950 150833048 -91831305 - AluJb SINE Alu -196 116 19 234 324 71 24 chr1 150833170 150833380 -91830973 - L1M4 LINE L1 -2185 5380 5161 350 291 77 57 chr1 150833453 150833529 -91830824 + L1MC/D LINE L1 5257 5330 -791 2372 79 0 7 chr1 150833529 150833833 -91830520 + AluY SINE Alu 1 302 -9 350 291 77 57 chr1 150833833 150834055 -91830298 + L1MC/D LINE L1 5330 5547 -574 33 56 0 0 chr1 150834055 150834109 -91830244 + AT_rich Low_complexity Low_complexity 1 54 0 1755 212 59 75 chr1 150834254 150834532 -91829821 - L1ME1 LINE L1 -5 6161 5880 2324 84 0 7 chr1 150834532 150834828 -91829525 + AluSx SINE Alu 11 304 -8 1755 212 59 75 chr1 150834828 150835177 -91829176 - L1ME1 LINE L1 -286 5880 5544 4242 203 29 41 chr1 150835217 150836890 -91827463 - L1M4 LINE L1 -3336 4229 2583 1601 191 0 10 chr1 150836890 150837178 -91827175 - AluJb SINE Alu -23 289 5 4242 203 29 41 chr1 150837178 150837296 -91827057 - L1M4 LINE L1 -4982 2583 2465 23 68 0 0 chr1 150837808 150837852 -91826501 + AT_rich Low_complexity Low_complexity 1 44 0 852 311 6 30 chr1 150837999 150838330 -91826023 + L1MC4 LINE L1 6702 7024 -1018 577 281 44 57 chr1 150838380 150838854 -91825499 + L1MC5 LINE L1 7449 7916 -45 2060 121 11 3 chr1 150839685 150839967 -91824386 - AluSx SINE Alu -28 284 1 421 135 14 0 chr1 150840103 150840177 -91824176 + L1MA5 LINE L1 6221 6295 -5 281 191 0 0 chr1 150840177 150840219 -91824134 - L1MC1 LINE L1 -48 6285 6244 447 19 0 0 chr1 150840219 150840271 -91824082 + (CA)n Simple_repeat Simple_repeat 1 52 0 210 219 0 0 chr1 150840271 150840335 -91824018 + GA-rich Low_complexity Low_complexity 3 66 0 1977 127 49 57 chr1 150840335 150840704 -91823649 + THE1C LTR MaLR 2 367 -8 761 151 0 7 chr1 150840704 150840843 -91823510 + GA-rich Low_complexity Low_complexity 1 138 0 305 410 12 0 chr1 150841266 150841432 -91822921 - MIR3 SINE MIR 0 208 41 251 161 48 48 chr1 150843495 150843557 -91820796 + HsTC2 DNA Tc2 1 62 -1836 3504 123 31 17 chr1 150843657 150843927 -91820426 + L1MA8 LINE L1 5535 5800 -491 2008 139 7 0 chr1 150843927 150844222 -91820131 - AluSx SINE Alu -15 297 1 3504 123 31 17 chr1 150844222 150844526 -91819827 + L1MA8 LINE L1 5800 6117 -174 19318 66 28 0 chr1 150844603 150847072 -91817281 + L1P LINE L1 11 2548 -3598 22 0 0 0 chr1 150847072 150847094 -91817259 + AT_rich Low_complexity Low_complexity 1 22 0 5365 90 104 38 chr1 150847181 150848034 -91816319 - SVA Other Other 0 1386 477 24590 34 3 1 chr1 150848034 150851674 -91812679 + L1PA4 LINE L1 2533 6154 -1 2109 146 0 0 chr1 150851834 150852135 -91812218 + AluSx SINE Alu 1 301 -11 1831 146 48 7 chr1 150852279 150852574 -91811779 + AluJb SINE Alu 3 309 -3 562 84 0 24 chr1 150853108 150853191 -91811162 - L1PA5 LINE L1 0 6154 6074 1280 217 97 0 chr1 150853275 150853518 -91810835 + L1ME1 LINE L1 4895 5184 -962 2407 41 0 17 chr1 150853518 150853812 -91810541 - AluY SINE Alu -22 289 1 1280 217 97 0 chr1 150853812 150853918 -91810435 + L1ME1 LINE L1 5184 5278 -868 2822 49 0 23 chr1 150853925 150854271 -91810082 + SVA Other Other 1046 1383 -3 915 72 232 0 chr1 150854271 150854409 -91809944 + AluY SINE Alu 134 303 -8 572 149 215 0 chr1 150854499 150854606 -91809747 + FLAM_C SINE Alu 2 131 -12 2482 238 45 69 chr1 150854637 150855285 -91809068 + L1ME1 LINE L1 5272 5893 -273 2232 87 10 19 chr1 150855285 150855597 -91808756 - AluY SINE Alu -2 309 1 2482 238 45 69 chr1 150855597 150855860 -91808493 + L1ME1 LINE L1 5893 6161 -5 571 233 22 22 chr1 150855870 150856050 -91808303 + L1M4 LINE L1 1471 1650 -4892 441 50 0 0 chr1 150856059 150856119 -91808234 + (CA)n Simple_repeat Simple_repeat 2 61 0 1839 139 0 45 chr1 150856178 150856487 -91807866 + AluJb SINE Alu 18 312 0 2415 79 0 13 chr1 150856506 150856821 -91807532 + AluY SINE Alu 1 311 0 489 323 8 8 chr1 150856832 150856965 -91807388 - MIR SINE MIR -125 137 5 2105 126 3 17 chr1 150857162 150857464 -91806889 + AluSx SINE Alu 5 302 -10 285 277 214 0 chr1 150857675 150857787 -91806566 - MIR SINE MIR -4 258 123 2141 127 0 0 chr1 150857990 150858317 -91806036 - AluSx SINE Alu 0 327 1 241 229 21 0 chr1 150858901 150858949 -91805404 - MLT1L LTR MaLR -416 199 151 444 312 57 79 chr1 150859050 150859433 -91804920 + L2 LINE L2 2760 3127 -186 1732 174 16 10 chr1 150859433 150859743 -91804610 - AluJo SINE Alu 0 312 1 444 312 57 79 chr1 150859743 150859926 -91804427 + L2 LINE L2 3127 3312 -1 1081 231 32 141 chr1 150860288 150860393 -91803960 + L2 LINE L2 2607 2722 -591 1971 151 13 0 chr1 150860393 150860691 -91803662 + AluJb SINE Alu 1 302 -10 1081 231 32 141 chr1 150860691 150860740 -91803613 + L2 LINE L2 2722 2775 -538 363 23 0 0 chr1 150860740 150860784 -91803569 + (TCTCCC)n Simple_repeat Simple_repeat 1 44 0 11072 33 11 53 chr1 150860789 150862197 -91802156 + SVA Other Other 38 1386 0 1081 231 32 141 chr1 150862197 150862794 -91801559 + L2 LINE L2 2779 3270 -43 258 32 0 0 chr1 150862823 150862854 -91801499 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 189 0 0 0 chr1 150863340 150863361 -91800992 + (T)n Simple_repeat Simple_repeat 1 21 0 254 287 64 32 chr1 150863411 150863505 -91800848 + L2 LINE L2 3169 3265 -7 524 258 39 38 chr1 150863669 150863962 -91800391 - L1ME2 LINE L1 -106 6058 3652 406 257 34 80 chr1 150864265 150864440 -91799913 + MLT1J LTR MaLR 1 167 -344 444 101 159 0 chr1 150864613 150864682 -91799671 - MER47A DNA MER2_type 0 366 287 807 187 0 0 chr1 150864688 150864811 -91799542 + FLAM_C SINE Alu 5 127 -16 1520 158 51 0 chr1 150864814 150865087 -91799266 - MER47A DNA MER2_type -78 288 2 385 283 82 20 chr1 150865112 150865412 -91798941 - MLT1J LTR MaLR -20 491 109 390 265 29 29 chr1 150865490 150865626 -91798727 + MLT1J LTR MaLR 330 465 -46 3917 166 23 32 chr1 150865674 150866420 -91797933 - L1MB3 LINE L1 -1 6182 5444 436 228 152 32 chr1 150866509 150866667 -91797686 - MIR SINE MIR -73 189 13 478 269 138 0 chr1 150866813 150866943 -91797410 + MIR3 SINE MIR 43 190 -18 1154 180 0 20 chr1 150867494 150867694 -91796659 + AluJb SINE Alu 1 196 -116 205 200 0 0 chr1 150867719 150867759 -91796594 + A-rich Low_complexity Low_complexity 1 40 0 2910 201 63 65 chr1 150867844 150868203 -91796150 + Charlie6 DNA MER1_type 60 418 -3082 2292 98 0 0 chr1 150868203 150868500 -91795853 + AluSx SINE Alu 1 297 -15 2910 201 63 65 chr1 150868500 150868641 -91795712 + Charlie6 DNA MER1_type 418 558 -2942 2578 53 0 0 chr1 150868641 150868943 -91795410 - AluY SINE Alu -9 302 1 2910 201 63 65 chr1 150868943 150869235 -91795118 + Charlie6 DNA MER1_type 558 851 -2649 312 241 25 25 chr1 150869245 150869324 -91795029 + MLT1D LTR MaLR 20 98 -407 22 0 0 0 chr1 150869875 150869897 -91794456 + AT_rich Low_complexity Low_complexity 1 22 0 24 103 0 0 chr1 150870339 150870426 -91793927 + AT_rich Low_complexity Low_complexity 1 87 0 1739 156 0 0 chr1 150870816 150871072 -91793281 - AluSg SINE Alu -20 290 35 30 27 0 0 chr1 150871124 150871161 -91793192 + AT_rich Low_complexity Low_complexity 1 37 0 391 301 116 17 chr1 150871338 150871693 -91792660 - Charlie2a DNA MER1_type -929 1933 1544 761 273 72 46 chr1 150871885 150872189 -91792164 - MER77 LTR ERV1 -133 472 161 574 241 123 30 chr1 150872209 150872412 -91791941 - MER77 LTR ERV1 -380 225 4 460 237 68 21 chr1 150873251 150873441 -91790912 + LTR37B LTR ERV1 270 468 0 475 324 68 74 chr1 150873588 150873881 -91790472 + L1MEd LINE L1 463 753 -5366 2035 131 3 7 chr1 150873881 150874178 -91790175 + AluSq SINE Alu 2 297 -16 475 324 68 74 chr1 150874178 150874387 -91789966 + L1MEd LINE L1 753 962 -5157 27 0 0 0 chr1 150874393 150874420 -91789933 + AT_rich Low_complexity Low_complexity 1 27 0 3715 171 79 43 chr1 150874905 150875718 -91788635 - MER4D LTR ERV1 -61 842 1 846 312 35 23 chr1 150875725 150876071 -91788282 + LTR16B LTR ERVL 109 458 -6 2593 131 24 5 chr1 150878059 150878479 -91785874 + MSTA LTR MaLR 1 428 0 2780 180 8 11 chr1 150878479 150879002 -91785351 + MSTA-int LTR MaLR 1 521 -1130 205 321 86 0 chr1 150879104 150879185 -91785168 + MIR SINE MIR 175 262 0 388 315 16 71 chr1 150880496 150880680 -91783673 - MER96 DNA MER1_type 0 175 2 278 287 6 43 chr1 150880790 150880954 -91783399 - HAL1 LINE L1 -961 1546 1389 305 263 116 23 chr1 150881071 150881330 -91783023 - L1MEc LINE L1 -5142 1254 972 610 340 10 7 chr1 150881409 150881700 -91782653 - L1MEc LINE L1 -5596 800 509 22 80 0 0 chr1 150882344 150882394 -91781959 + AT_rich Low_complexity Low_complexity 1 50 0 494 231 0 0 chr1 150882820 150882924 -91781429 - FRAM SINE Alu -10 166 63 244 175 53 18 chr1 150882924 150882981 -91781372 + LTR68 LTR ERV1 23 81 -659 862 119 21 28 chr1 150883082 150883225 -91781128 - THE1-int LTR MaLR -979 601 460 42 64 0 27 chr1 150883225 150883335 -91781018 + AT_rich Low_complexity Low_complexity 1 107 0 707 261 19 33 chr1 150884029 150884244 -91780109 - MER58B DNA MER1_type -12 329 118 4386 224 14 6 chr1 150884349 150885418 -91778935 - L1 LINE L1 -1230 4916 3839 295 257 37 64 chr1 150885597 150885706 -91778647 - MIR SINE MIR -104 158 53 204 158 0 0 chr1 150885797 150885835 -91778518 + (CA)n Simple_repeat Simple_repeat 1 38 0 2127 121 3 3 chr1 150885976 150886289 -91778064 + AluSq SINE Alu 1 313 0 193 276 69 0 chr1 150888851 150888909 -91775444 + L3 LINE CR1 932 993 -584 335 317 10 0 chr1 150889026 150889130 -91775223 + MIR SINE MIR 110 214 -48 2471 70 0 0 chr1 150890119 150890419 -91773934 + AluY SINE Alu 1 300 -11 222 37 0 0 chr1 150890671 150890698 -91773655 + (A)n Simple_repeat Simple_repeat 1 27 0 988 336 33 7 chr1 150891311 150891734 -91772619 - LTR16B LTR ERVL -9 455 22 2258 92 0 7 chr1 150891933 150892236 -91772117 - AluY SINE Alu -10 301 1 4151 89 25 0 chr1 150892514 150893112 -91771241 + L1PA7 LINE L1 5506 6118 -36 1539 95 18 0 chr1 150893112 150893327 -91771026 + L1PA8 LINE L1 5948 6172 0 843 115 164 79 chr1 150893625 150893790 -91770563 - AluY SINE Alu -132 179 1 2437 270 16 59 chr1 150893791 150894761 -91769592 - L1PA12 LINE L1 -4689 2892 1965 679 332 125 16 chr1 150895613 150896053 -91768300 + L2 LINE L2 2474 2961 -353 3102 150 20 15 chr1 150896223 150896711 -91767642 + MER61D-int LTR ERV1 3515 3999 -2997 180 0 0 0 chr1 150896711 150896731 -91767622 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3102 150 20 15 chr1 150896731 150896996 -91767357 + MER61D-int LTR ERV1 3999 6995 -1 2753 155 34 28 chr1 150896997 150897316 -91767037 + MER61D LTR ERV1 1 326 -175 2013 138 3 0 chr1 150897316 150897605 -91766748 + AluSg SINE Alu 2 291 -19 2753 155 34 28 chr1 150897605 150897781 -91766572 + MER61D LTR ERV1 326 499 -2 2604 184 48 45 chr1 150898115 150898719 -91765634 + L1MA6 LINE L1 5694 6299 -1 4257 206 44 11 chr1 150899332 150900192 -91764161 + MSTA-int LTR MaLR 763 1651 0 2388 155 21 16 chr1 150900192 150900618 -91763735 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr1 150901510 150901535 -91762818 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 150902045 150902075 -91762278 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr1 150902341 150902380 -91761973 + AT_rich Low_complexity Low_complexity 1 39 0 600 63 13 0 chr1 150902474 150902553 -91761800 + L1PA6 LINE L1 6005 6084 -70 2468 112 14 0 chr1 150905019 150905384 -91758969 - THE1B-int LTR MaLR -1210 370 1 1952 168 25 25 chr1 150905384 150905748 -91758605 - THE1B LTR MaLR 0 364 1 1442 305 42 69 chr1 150905748 150907007 -91757346 - L1PA12 LINE L1 -5530 2051 8 625 261 51 6 chr1 150907015 150907172 -91757181 - MLT1A2 LTR MaLR -54 320 157 2049 121 0 29 chr1 150907297 150907604 -91756749 + AluY SINE Alu 1 298 -13 279 340 137 32 chr1 150908687 150909119 -91755234 + L2 LINE L2 590 1066 -2248 605 236 18 24 chr1 150909729 150909894 -91754459 - MLT1D LTR MaLR -28 477 314 212 143 0 0 chr1 150910235 150910270 -91754083 + (CA)n Simple_repeat Simple_repeat 2 36 0 214 205 0 0 chr1 150911250 150911289 -91753064 + A-rich Low_complexity Low_complexity 1 39 0 30 69 0 0 chr1 150911686 150911744 -91752609 + AT_rich Low_complexity Low_complexity 1 58 0 1860 151 7 13 chr1 150911903 150912208 -91752145 - AluSx SINE Alu -9 303 1 1681 215 108 9 chr1 150912351 150912775 -91751578 - MER31B LTR ERV1 0 466 1 207 260 0 0 chr1 150913967 150914017 -91750336 + L2 LINE L2 3214 3263 -9 1298 204 11 28 chr1 150915160 150915513 -91748840 + L1MA3 LINE L1 2710 3056 -3090 * 5620 190 18 32 chr1 150915499 150915806 -91748547 + L1MA3 LINE L1 4689 4999 -1306 1891 133 30 4 chr1 150915806 150916076 -91748277 + AluSx SINE Alu 1 277 -35 5620 190 18 32 chr1 150916076 150917399 -91746954 + L1MA3 LINE L1 4999 6295 -10 1877 131 0 7 chr1 150917439 150917721 -91746632 - AluSx SINE Alu -32 280 1 1652 216 20 88 chr1 150917721 150917828 -91746525 + Charlie6 DNA MER1_type 2091 2204 -1296 2504 52 10 0 chr1 150917828 150918133 -91746220 - AluY SINE Alu 0 311 4 1652 216 20 88 chr1 150918133 150918315 -91746038 + Charlie6 DNA MER1_type 2204 2397 -1103 2382 96 0 6 chr1 150918315 150918629 -91745724 - AluSx SINE Alu 0 312 1 1652 216 20 88 chr1 150918629 150918876 -91745477 + Charlie6 DNA MER1_type 2397 2591 -909 758 151 0 8 chr1 150918877 150918996 -91745357 + FLAM_C SINE Alu 1 118 -25 3492 194 53 23 chr1 150919029 150919359 -91744994 + Charlie6 DNA MER1_type 2620 2939 -561 2104 117 0 0 chr1 150919359 150919683 -91744670 - AluSx SINE Alu 0 324 1 3492 194 53 23 chr1 150919683 150920206 -91744147 + Charlie6 DNA MER1_type 2939 3499 -1 374 274 16 68 chr1 150920211 150920401 -91743952 - LTR41 LTR ERVL -10 763 584 217 247 14 0 chr1 150920905 150920978 -91743375 + (TATAA)n Simple_repeat Simple_repeat 4 77 0 3013 55 0 5 chr1 150921368 150921753 -91742600 - L1PA5 LINE L1 -2 6152 5770 446 0 0 0 chr1 150921753 150921807 -91742546 - AluY SINE Alu -13 296 243 2155 81 10 20 chr1 150921809 150922105 -91742248 - AluY SINE Alu -18 293 1 563 258 31 54 chr1 150922108 150922368 -91741985 + L1ME1 LINE L1 5908 6161 -5 554 233 22 22 chr1 150922378 150922558 -91741795 + L1M4 LINE L1 1471 1650 -4892 441 50 0 0 chr1 150922567 150922627 -91741726 + (CA)n Simple_repeat Simple_repeat 2 61 0 1660 147 14 43 chr1 150922686 150922965 -91741388 + AluJb SINE Alu 18 288 -24 303 316 43 17 chr1 150923198 150923315 -91741038 - MIR SINE MIR -3 259 140 2334 95 0 3 chr1 150923327 150923631 -91740722 - AluSg SINE Alu -6 304 2 564 228 28 102 chr1 150923748 150923797 -91740556 + Charlie6 DNA MER1_type 1226 1277 -2223 2309 88 3 0 chr1 150923797 150924093 -91740260 + AluY SINE Alu 1 297 -14 564 228 28 102 chr1 150924093 150924191 -91740162 + Charlie6 DNA MER1_type 1277 1349 -2151 2357 86 3 3 chr1 150924191 150924492 -91739861 + AluSp SINE Alu 2 302 -11 564 228 28 102 chr1 150924492 150924598 -91739755 + Charlie6 DNA MER1_type 1349 1461 -2039 408 115 0 0 chr1 150924598 150924659 -91739694 + AluS SINE Alu 1 61 -248 9280 175 18 56 chr1 150924659 150925821 -91738532 + L1MA3 LINE L1 303 1508 -6057 222 37 0 0 chr1 150925821 150925848 -91738505 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2260 116 0 0 chr1 150925852 150926154 -91738199 - AluSx SINE Alu -10 302 1 9280 175 18 56 chr1 150926154 150926582 -91737771 + L1MA3 LINE L1 1511 1954 -5611 1865 149 3 13 chr1 150926582 150926883 -91737470 + AluSx SINE Alu 1 298 -14 9280 175 18 56 chr1 150926883 150927034 -91737319 + L1MA3 LINE L1 1954 2109 -5456 1920 77 81 0 chr1 150927034 150927294 -91737059 + AluY SINE Alu 16 296 -15 9280 175 18 56 chr1 150927294 150928192 -91736161 + L1MA3 LINE L1 2109 3040 -4525 1827 170 6 50 chr1 150928192 150928509 -91735844 + AluJb SINE Alu 1 303 -9 9280 175 18 56 chr1 150928509 150928742 -91735611 + L1MA3 LINE L1 3040 3280 -4285 868 89 89 8 chr1 150928742 150928865 -91735488 + AluSq/x SINE Alu 1 133 -179 2159 96 7 7 chr1 150928867 150929160 -91735193 + AluSg SINE Alu 1 293 -17 9280 175 18 56 chr1 150929160 150929376 -91734977 + L1MA3 LINE L1 3281 3504 -4061 1208 40 7 0 chr1 150929376 150929526 -91734827 + L1PA7 LINE L1 6004 6154 0 2268 103 0 7 chr1 150929530 150929832 -91734521 + AluSc SINE Alu 1 300 -9 9280 175 18 56 chr1 150929832 150930276 -91734077 + L1MA3 LINE L1 3507 4475 -3090 5338 160 17 16 chr1 150930262 150930569 -91733784 + L1MA3 LINE L1 6108 6413 -1311 * 1930 138 26 30 chr1 150930569 150930873 -91733480 + AluSx SINE Alu 1 303 -9 5338 160 17 16 chr1 150930873 150932173 -91732180 + L1MA3 LINE L1 6413 7724 0 2023 129 0 7 chr1 150932182 150932485 -91731868 - AluSx SINE Alu -11 301 1 3893 188 40 128 chr1 150932486 150932592 -91731761 + Charlie6 DNA MER1_type 2090 2204 -1296 2464 53 13 0 chr1 150932592 150932896 -91731457 - AluY SINE Alu 0 311 4 3893 188 40 128 chr1 150932896 150933078 -91731275 + Charlie6 DNA MER1_type 2204 2400 -1100 2400 96 0 6 chr1 150933078 150933392 -91730961 - AluSx SINE Alu 0 312 1 3893 188 40 128 chr1 150933392 150933640 -91730713 + Charlie6 DNA MER1_type 2400 2668 -832 769 151 0 8 chr1 150933640 150933759 -91730594 + FLAM_C SINE Alu 1 118 -25 3893 188 40 128 chr1 150933759 150934122 -91730231 + Charlie6 DNA MER1_type 2668 3061 -439 2111 117 0 0 chr1 150934122 150934446 -91729907 - AluSx SINE Alu 0 324 1 3893 188 40 128 chr1 150934446 150934965 -91729388 + Charlie6 DNA MER1_type 3061 3495 -5 362 265 18 53 chr1 150934974 150935144 -91729209 - LTR41 LTR ERVL -10 763 600 217 247 14 0 chr1 150935667 150935740 -91728613 + (TATAA)n Simple_repeat Simple_repeat 4 77 0 3559 42 0 20 chr1 150936130 150936508 -91727845 - L1PA5 LINE L1 -2 6152 5783 2696 16 7 0 chr1 150936508 150936811 -91727542 - AluYa5 SINE Alu -6 305 1 3559 42 0 20 chr1 150936811 150936887 -91727466 - L1PA5 LINE L1 -371 5783 5707 1685 108 6 133 chr1 150937100 150937523 -91726830 + AluSx SINE Alu 1 382 0 2286 94 3 0 chr1 150938287 150938585 -91725768 - AluSg SINE Alu -11 299 1 1928 264 76 32 chr1 150938731 150939025 -91725328 - L2 LINE L2 -7 3306 3026 2278 108 0 7 chr1 150939025 150939332 -91725021 + AluSx SINE Alu 3 307 -5 1928 264 76 32 chr1 150939332 150939845 -91724508 - L2 LINE L2 -287 3026 2452 2102 104 10 29 chr1 150939845 150940152 -91724201 + AluSx SINE Alu 5 305 -7 1928 264 76 32 chr1 150940152 150940288 -91724065 - L2 LINE L2 -861 2452 2323 200 167 0 0 chr1 150940740 150940770 -91723583 + L2 LINE L2 3136 3165 -107 204 125 0 0 chr1 150940813 150940845 -91723508 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 24 32 0 0 chr1 150941108 150941139 -91723214 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr1 150941236 150941272 -91723081 + AT_rich Low_complexity Low_complexity 1 36 0 2188 200 69 16 chr1 150941393 150941902 -91722451 - MLT1F LTR MaLR -6 536 1 1493 178 3 77 chr1 150942715 150943041 -91721312 + AluJo SINE Alu 1 302 -10 3379 163 8 97 chr1 150943111 150943440 -91720913 - MER4E LTR ERV1 0 779 422 1577 106 13 17 chr1 150943440 150943676 -91720677 + L1PA10 LINE L1 5930 6164 -4 3379 163 8 97 chr1 150943676 150943961 -91720392 - MER4E LTR ERV1 -357 422 113 1985 127 33 29 chr1 150943961 150944268 -91720085 + AluSq SINE Alu 1 308 -5 2023 90 72 0 chr1 150944270 150944549 -91719804 + AluSq SINE Alu 1 299 -14 3379 163 8 97 chr1 150944549 150944663 -91719690 - MER4E LTR ERV1 -667 112 -11 2225 119 0 0 chr1 150944663 150944956 -91719397 + AluSx SINE Alu 1 293 -19 3379 163 8 97 chr1 150944956 150944975 -91719378 - MER4E LTR ERV1 -790 4294967285 -30 4200 109 21 16 chr1 150944975 150945607 -91718746 - MER41B LTR ERV1 0 635 1 3379 163 8 97 chr1 150945607 150945669 -91718684 - MER4E LTR ERV1 -809 4294967266 40 2054 111 13 35 chr1 150945669 150945985 -91718368 + AluSp SINE Alu 1 309 -4 3379 163 8 97 chr1 150945985 150946023 -91718330 - MER4E LTR ERV1 -738 41 1 180 143 0 0 chr1 150946254 150946282 -91718071 + L2 LINE L2 3244 3271 -1 2490 112 51 57 chr1 150946381 150946974 -91717379 - MER4B LTR ERV1 0 779 1 1690 173 33 3 chr1 150948716 150949016 -91715337 - AluJo SINE Alu -3 309 1 2264 101 0 0 chr1 150950721 150951017 -91713336 - AluSg SINE Alu -14 296 1 230 240 40 40 chr1 150951137 150951212 -91713141 + L2 LINE L2 3239 3313 0 888 118 0 22 chr1 150951356 150951491 -91712862 + FLAM_C SINE Alu 2 133 0 572 208 0 0 chr1 150951547 150951648 -91712705 + AluSc SINE Alu 103 203 -106 474 316 123 0 chr1 150952270 150952482 -91711871 + MIR SINE MIR 15 252 -10 1946 166 0 3 chr1 150952879 150953181 -91711172 + AluJb SINE Alu 2 302 -10 4566 148 182 13 chr1 150953885 150954325 -91710028 - Tigger3b DNA MER2_type -1797 1231 867 2257 124 0 0 chr1 150954325 150954624 -91709729 - AluSx SINE Alu -13 299 1 4566 148 182 13 chr1 150954624 150955236 -91709117 - Tigger3b DNA MER2_type -2161 867 1 859 193 22 31 chr1 150955391 150955614 -91708739 - L1MD2 LINE L1 -13 6346 6126 25 0 0 0 chr1 150955747 150955772 -91708581 + AT_rich Low_complexity Low_complexity 1 25 0 265 186 186 10 chr1 150955803 150955900 -91708453 - L1ME4a LINE L1 -41 6080 5967 1602 94 0 9 chr1 150956211 150956423 -91707930 + AluSg/x SINE Alu 83 292 -17 2187 115 13 3 chr1 150956660 150956964 -91707389 - AluSq SINE Alu -6 307 1 596 178 93 0 chr1 150957000 150957118 -91707235 - FLAM_C SINE Alu -4 129 1 2314 103 3 0 chr1 150957120 150957431 -91706922 - AluSx SINE Alu 0 312 1 2152 158 83 13 chr1 150957440 150957742 -91706611 - L1MA8 LINE L1 -185 6106 5762 369 0 0 0 chr1 150957742 150957783 -91706570 + (TG)n Simple_repeat Simple_repeat 2 42 0 2152 158 83 13 chr1 150957783 150957928 -91706425 - L1MA8 LINE L1 -529 5762 5628 294 29 0 0 chr1 150957938 150957973 -91706380 + (TA)n Simple_repeat Simple_repeat 1 35 0 502 205 35 60 chr1 150957973 150958173 -91706180 - AluSg/x SINE Alu -7 303 109 1188 118 0 0 chr1 150958465 150958626 -91705727 - AluY SINE Alu -150 161 1 1354 159 9 9 chr1 150958761 150958981 -91705372 + AluSg/x SINE Alu 75 294 -18 1553 188 80 0 chr1 150959063 150959350 -91705003 - AluJb SINE Alu -2 310 1 2101 95 0 11 chr1 150959927 150960210 -91704143 - AluSx SINE Alu -32 280 1 3750 152 38 76 chr1 150960358 150961444 -91702909 - L1MA6 LINE L1 -5 6295 5297 1761 153 87 3 chr1 150961444 150961732 -91702621 - AluJo SINE Alu 0 312 1 3750 152 38 76 chr1 150961732 150962351 -91702002 - L1MA6 LINE L1 -1003 5297 4657 2001 113 46 0 chr1 150963223 150963505 -91700848 - AluSq SINE Alu -18 295 1 216 209 0 0 chr1 150963673 150963716 -91700637 - L2 LINE L2 0 3313 3271 187 418 20 41 chr1 150963741 150963887 -91700466 - L2 LINE L2 -116 3156 3014 247 434 6 6 chr1 150964185 150964344 -91700009 - L2 LINE L2 -548 2766 2608 1205 129 12 0 chr1 150964398 150964569 -91699784 + AluSg/x SINE Alu 127 299 -13 683 222 89 30 chr1 150964578 150964781 -91699572 + MIR SINE MIR 48 262 0 247 206 254 0 chr1 150964801 150964864 -91699489 + L2 LINE L2 3224 3302 -11 195 42 0 0 chr1 150964865 150964889 -91699464 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr1 150965388 150965418 -91698935 + AT_rich Low_complexity Low_complexity 1 30 0 2470 63 3 0 chr1 150966018 150966318 -91698035 + AluY SINE Alu 1 301 -10 195 239 0 0 chr1 150966689 150966756 -91697597 + GA-rich Low_complexity Low_complexity 1 67 0 22 56 0 0 chr1 150966933 150966969 -91697384 + AT_rich Low_complexity Low_complexity 1 36 0 567 319 70 28 chr1 150967042 150967281 -91697072 + L1MC4a LINE L1 5413 5641 -2167 2300 114 3 0 chr1 150967281 150967587 -91696766 + AluSx SINE Alu 1 307 -5 567 319 70 28 chr1 150967587 150967805 -91696548 + L1MC4a LINE L1 5641 5889 -1919 2160 93 35 0 chr1 150967869 150968158 -91696195 + AluSg SINE Alu 1 299 -11 27 0 0 0 chr1 150968652 150968679 -91695674 + AT_rich Low_complexity Low_complexity 1 27 0 1852 113 56 25 chr1 150968679 150968963 -91695390 + AluSx SINE Alu 1 293 -19 2254 98 0 7 chr1 150968971 150969267 -91695086 + AluSg SINE Alu 1 294 -16 1942 146 7 3 chr1 150969299 150969594 -91694759 + AluSx SINE Alu 1 296 -16 198 289 308 10 chr1 150969742 150969846 -91694507 + MIR3 SINE MIR 20 154 -54 522 195 18 31 chr1 150969974 150970152 -91694201 - MER20 DNA MER1_type -1 218 13 1742 168 27 10 chr1 150970161 150970458 -91693895 - AluJb SINE Alu -10 302 1 724 244 154 28 chr1 150970725 150971124 -91693229 - L2 LINE L2 -172 3141 2708 428 218 45 30 chr1 150971577 150971710 -91692643 - Charlie2a DNA MER1_type -1616 1246 1112 916 171 0 26 chr1 150971736 150971888 -91692465 - AluJb SINE Alu -30 282 135 2048 130 0 10 chr1 150971890 150972191 -91692162 - AluSg SINE Alu -12 298 1 332 296 204 7 chr1 150972460 150972612 -91691741 + MER5A DNA MER1_type 8 189 0 29 0 0 0 chr1 150974343 150974372 -91689981 + AT_rich Low_complexity Low_complexity 1 29 0 1086 125 0 12 chr1 150975148 150975335 -91689018 - AluSg/x SINE Alu 0 310 122 21 0 0 0 chr1 150977592 150977613 -91686740 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 150978731 150978756 -91685597 + AT_rich Low_complexity Low_complexity 1 25 0 196 393 0 0 chr1 150980123 150980184 -91684169 + MIR SINE MIR 21 81 -127 809 199 32 21 chr1 150980618 150980804 -91683549 - MER5A DNA MER1_type 0 189 2 310 290 191 6 chr1 150980905 150981067 -91683286 - MIR SINE MIR 0 262 71 226 316 94 57 chr1 150981209 150981453 -91682900 + L2 LINE L2 2638 2890 -424 1933 149 3 3 chr1 150981512 150981814 -91682539 + AluJb SINE Alu 1 302 -10 1262 123 0 0 chr1 150981814 150981993 -91682360 + AluSg/x SINE Alu 134 312 0 346 261 0 34 chr1 150982222 150982310 -91682043 + L2 LINE L2 3188 3272 0 2243 78 11 0 chr1 150982381 150982686 -91681667 - AluSp SINE Alu 0 308 1 1957 123 0 8 chr1 150982831 150983099 -91681254 + AluSx SINE Alu 3 268 -44 231 36 0 0 chr1 150983100 150983128 -91681225 + (TC)n Simple_repeat Simple_repeat 2 29 0 192 77 0 0 chr1 150983127 150983153 -91681200 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 483 128 26 0 chr1 150983748 150983826 -91680527 + AluS SINE Alu 1 80 -232 2101 95 0 11 chr1 150984115 150984398 -91679955 - AluSx SINE Alu -32 280 1 3750 152 38 76 chr1 150984546 150985632 -91678721 - L1MA6 LINE L1 -5 6295 5297 1761 153 87 3 chr1 150985632 150985920 -91678433 - AluJo SINE Alu 0 312 1 3750 152 38 76 chr1 150985920 150986539 -91677814 - L1MA6 LINE L1 -1003 5297 4657 2001 113 46 0 chr1 150987411 150987693 -91676660 - AluSq SINE Alu -18 295 1 216 209 0 0 chr1 150987861 150987904 -91676449 - L2 LINE L2 0 3313 3271 187 418 20 41 chr1 150987929 150988075 -91676278 - L2 LINE L2 -116 3156 3014 247 434 6 6 chr1 150988373 150988532 -91675821 - L2 LINE L2 -548 2766 2608 1205 129 12 0 chr1 150988586 150988757 -91675596 + AluSg/x SINE Alu 127 299 -13 683 222 89 30 chr1 150988766 150988969 -91675384 + MIR SINE MIR 48 262 0 247 206 254 0 chr1 150988989 150989052 -91675301 + L2 LINE L2 3224 3302 -11 195 42 0 0 chr1 150989053 150989077 -91675276 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr1 150989576 150989606 -91674747 + AT_rich Low_complexity Low_complexity 1 30 0 2747 30 0 0 chr1 150990206 150990511 -91673842 + AluYa5 SINE Alu 1 305 -6 3039 45 0 5 chr1 150990511 150990889 -91673464 + L1PA5 LINE L1 5777 6152 -2 217 247 14 0 chr1 150991279 150991352 -91673001 + (TTATA)n Simple_repeat Simple_repeat 4 77 0 344 269 18 58 chr1 150991875 150992046 -91672307 + LTR41 LTR ERVL 600 763 -10 3260 193 55 26 chr1 150992055 150992574 -91671779 - Charlie6 DNA MER1_type -5 3495 2939 2112 117 0 0 chr1 150992574 150992898 -91671455 + AluSx SINE Alu 1 324 0 3260 193 55 26 chr1 150992898 150993228 -91671125 - Charlie6 DNA MER1_type -561 2939 2620 769 151 0 8 chr1 150993261 150993380 -91670973 - FLAM_C SINE Alu -25 118 1 578 211 24 117 chr1 150993381 150993628 -91670725 - Charlie6 DNA MER1_type -909 2591 2368 673 91 0 0 chr1 150993628 150993716 -91670637 + AluS SINE Alu 1 88 -225 31 0 0 0 chr1 150994067 150994098 -91670255 + AT_rich Low_complexity Low_complexity 1 31 0 621 71 65 12 chr1 150994098 150994268 -91670085 + (TA)n Simple_repeat Simple_repeat 1 179 0 43 0 0 0 chr1 150994270 150994313 -91670040 + AT_rich Low_complexity Low_complexity 1 43 0 705 158 0 0 chr1 150994315 150994429 -91669924 - FLAM_C SINE Alu -19 114 1 2065 122 3 3 chr1 150994671 150994967 -91669386 + AluSx SINE Alu 7 302 -10 2127 128 10 3 chr1 150995428 150995734 -91668619 - AluSq SINE Alu -5 308 1 590 256 29 114 chr1 150996444 150996586 -91667767 + MIR SINE MIR 7 117 -145 881 125 0 22 chr1 150996586 150996722 -91667631 + AluJo SINE Alu 1 133 -169 590 256 29 114 chr1 150996722 150996852 -91667501 + MIR SINE MIR 117 256 -6 2021 109 29 0 chr1 150996870 150997145 -91667208 + AluSx SINE Alu 1 283 -29 305 219 0 0 chr1 150997147 150997211 -91667142 + L1MC4 LINE L1 6640 6703 -1339 240 167 0 0 chr1 150997299 150997347 -91667006 + GA-rich Low_complexity Low_complexity 4 51 0 334 367 87 7 chr1 150998621 150998771 -91665582 - MIR SINE MIR -81 181 20 1320 237 72 51 chr1 150999049 150999521 -91664832 - L1M4 LINE L1 -6044 498 17 302 272 44 155 chr1 151001207 151001413 -91662940 + MIR3 SINE MIR 26 208 0 192 200 0 0 chr1 151001525 151001565 -91662788 + (TA)n Simple_repeat Simple_repeat 2 41 0 794 276 114 0 chr1 151001585 151001813 -91662540 - MIR SINE MIR -5 257 4 187 304 29 29 chr1 151002169 151002238 -91662115 + L2 LINE L2 2896 2964 -349 978 151 50 50 chr1 151002358 151002537 -91661816 + AluJo SINE Alu 113 291 -21 2228 90 7 0 chr1 151002829 151003132 -91661221 + AluSc SINE Alu 2 306 0 230 220 40 0 chr1 151003664 151003714 -91660639 + CT-rich Low_complexity Low_complexity 3 54 0 22 80 0 0 chr1 151003725 151003775 -91660578 + AT_rich Low_complexity Low_complexity 1 50 0 247 114 0 0 chr1 151004068 151004103 -91660250 + Alu SINE Alu 6 40 -262 682 119 0 0 chr1 151004103 151004204 -91660149 + AluSg/x SINE Alu 208 308 -4 1172 213 100 125 chr1 151004262 151004506 -91659847 - L2 LINE L2 -427 2887 2639 758 145 14 51 chr1 151004506 151004644 -91659709 + FLAM_C SINE Alu 1 133 0 1172 213 100 125 chr1 151004644 151004847 -91659506 - L2 LINE L2 -675 2639 2454 2264 83 7 0 chr1 151004847 151005147 -91659206 - AluY SINE Alu -9 302 1 1172 213 100 125 chr1 151005147 151005267 -91659086 - L2 LINE L2 -860 2454 2333 665 172 98 0 chr1 151005282 151005404 -91658949 + AluSg SINE Alu 1 134 -176 1635 230 96 31 chr1 151005417 151005835 -91658518 - L2 LINE L2 -1712 1602 1158 520 229 25 17 chr1 151005888 151006006 -91658347 - MLT1E LTR MaLR -106 487 369 180 111 0 0 chr1 151006120 151006147 -91658206 + (A)n Simple_repeat Simple_repeat 1 27 0 201 309 0 0 chr1 151006706 151006761 -91657592 + (ATG)n Simple_repeat Simple_repeat 3 57 0 2382 88 0 7 chr1 151006775 151007083 -91657270 + AluSx SINE Alu 1 306 -6 248 247 111 37 chr1 151007303 151007384 -91656969 - L2 LINE L2 -8 3305 3219 30 45 0 0 chr1 151007500 151007544 -91656809 + AT_rich Low_complexity Low_complexity 1 44 0 368 231 65 9 chr1 151007576 151007684 -91656669 + L1MC2 LINE L1 6202 6315 -29 33 0 0 0 chr1 151007684 151007717 -91656636 + AT_rich Low_complexity Low_complexity 1 33 0 202 304 18 0 chr1 151007958 151008014 -91656339 + L2 LINE L2 3257 3313 0 188 375 0 0 chr1 151008418 151008498 -91655855 - MIR SINE MIR -77 131 52 437 271 56 42 chr1 151009238 151009382 -91654971 - MER5B DNA MER1_type 0 178 33 378 222 40 10 chr1 151009575 151009674 -91654679 - Charlie1 DNA MER1_type -2659 102 1 1961 145 0 31 chr1 151009820 151010137 -91654216 - AluJo SINE Alu 0 312 6 2116 120 3 23 chr1 151010702 151011003 -91653350 - AluSx SINE Alu -17 295 1 1941 147 3 3 chr1 151011158 151011475 -91652878 - AluJb SINE Alu 0 317 1 237 286 48 0 chr1 151011495 151011558 -91652795 + MIR SINE MIR 41 106 -156 396 277 54 23 chr1 151011990 151012120 -91652233 + MIR SINE MIR 14 147 -115 182 282 0 0 chr1 151013534 151013573 -91650780 - MER5B DNA MER1_type -123 55 17 1171 139 14 43 chr1 151013709 151013917 -91650436 + AluJb SINE Alu 86 287 -25 2028 130 3 20 chr1 151014693 151014993 -91649360 + AluSq SINE Alu 4 298 -15 1313 125 135 5 chr1 151015062 151015270 -91649083 + AluSx SINE Alu 1 235 -77 1915 170 0 6 chr1 151015469 151015780 -91648573 + AluJb SINE Alu 1 309 -3 180 328 66 74 chr1 151015977 151016099 -91648254 - L2 LINE L2 -18 3254 3134 468 265 21 95 chr1 151016220 151016312 -91648041 + MIR3 SINE MIR 31 128 -80 1823 134 7 41 chr1 151016312 151016602 -91647751 + AluSx SINE Alu 1 280 -32 237 65 0 0 chr1 151016602 151016633 -91647720 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 468 265 21 95 chr1 151016633 151016728 -91647625 + MIR3 SINE MIR 126 205 -3 2316 98 0 7 chr1 151016799 151017105 -91647248 + AluSg SINE Alu 1 304 -6 907 151 7 0 chr1 151017123 151017269 -91647084 + AluSg/x SINE Alu 147 293 -17 2595 47 0 0 chr1 151017770 151018070 -91646283 + AluY SINE Alu 1 300 -11 764 82 0 0 chr1 151018392 151018489 -91645864 - AluSg SINE Alu -213 97 1 215 352 88 8 chr1 151018690 151018815 -91645538 + L2 LINE L2 2373 2507 -807 722 178 0 0 chr1 151018903 151019021 -91645332 - FLAM_C SINE Alu -25 118 1 2274 90 7 7 chr1 151019572 151019872 -91644481 - AluSx SINE Alu -11 301 2 222 62 0 0 chr1 151019882 151019914 -91644439 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1540 176 3 35 chr1 151019916 151020200 -91644153 - AluJb SINE Alu -37 275 1 2175 96 10 3 chr1 151020622 151020915 -91643438 + AluSg SINE Alu 1 295 -15 444 37 0 0 chr1 151021025 151021079 -91643274 + (GA)n Simple_repeat Simple_repeat 1 54 0 506 336 7 0 chr1 151021192 151021341 -91643012 + MIR SINE MIR 63 212 -50 2114 129 3 3 chr1 151021699 151021994 -91642359 + AluSx SINE Alu 1 295 -17 36 23 0 0 chr1 151022085 151022128 -91642225 + AT_rich Low_complexity Low_complexity 1 43 0 2135 138 0 0 chr1 151022982 151023286 -91641067 + AluSx SINE Alu 3 306 -6 2260 101 3 0 chr1 151023483 151023780 -91640573 + AluSp SINE Alu 9 306 -7 2483 37 0 14 chr1 151024076 151024372 -91639981 - AluY SINE Alu -19 292 1 207 0 0 0 chr1 151024491 151024514 -91639839 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2464 92 0 9 chr1 151024561 151024876 -91639477 - AluSx SINE Alu 0 312 1 26 0 0 0 chr1 151025535 151025561 -91638792 + AT_rich Low_complexity Low_complexity 1 26 0 1824 166 0 18 chr1 151025565 151025848 -91638505 + AluJb SINE Alu 5 282 -30 258 32 0 0 chr1 151025851 151025882 -91638471 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 324 0 0 0 chr1 151025986 151026022 -91638331 + (CA)n Simple_repeat Simple_repeat 2 37 0 379 330 0 0 chr1 151026306 151026415 -91637938 + L2 LINE L2 3201 3309 -4 2085 153 62 72 chr1 151026416 151026944 -91637409 - LTR8A LTR ERV1 0 727 205 932 78 0 0 chr1 151026945 151027060 -91637293 - AluSg/x SINE Alu -11 299 185 28 61 0 0 chr1 151027520 151027569 -91636784 + AT_rich Low_complexity Low_complexity 1 49 0 258 318 0 0 chr1 151027946 151028009 -91636344 + L2 LINE L2 3186 3248 -24 218 152 22 22 chr1 151028060 151028106 -91636247 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 312 172 0 0 chr1 151028319 151028377 -91635976 + CT-rich Low_complexity Low_complexity 3 60 0 1715 135 49 36 chr1 151028598 151028902 -91635451 - AluJo SINE Alu -2 310 3 198 172 0 47 chr1 151029548 151029612 -91634741 + C-rich Low_complexity Low_complexity 3 63 0 243 266 16 62 chr1 151029643 151029771 -91634582 + CT-rich Low_complexity Low_complexity 6 127 0 1469 171 25 11 chr1 151030313 151030617 -91633736 + AluJb SINE Alu 1 308 0 284 191 162 0 chr1 151032209 151032277 -91632076 + MER5A DNA MER1_type 34 112 -77 187 193 70 53 chr1 151032303 151032360 -91631993 + MER5A DNA MER1_type 18 75 -114 1163 234 0 5 chr1 151032502 151032724 -91631629 + MER58A DNA MER1_type 1 221 -3 23 0 0 0 chr1 151032966 151032989 -91631364 + AT_rich Low_complexity Low_complexity 1 23 0 670 245 35 15 chr1 151033950 151034177 -91630176 + L1ME3 LINE L1 3969 4202 -1944 235 212 30 30 chr1 151034177 151034243 -91630110 - Tigger6b DNA MER2_type -671 926 861 953 222 141 4 chr1 151034244 151034514 -91629839 + L1ME3 LINE L1 4276 4582 -1564 817 182 0 15 chr1 151034607 151034739 -91629614 + FLAM_C SINE Alu 3 132 -1 271 149 0 45 chr1 151034739 151034806 -91629547 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 976 186 15 10 chr1 151034810 151035014 -91629339 + L1ME3 LINE L1 4841 5045 -1101 2312 90 0 16 chr1 151035014 151035324 -91629029 + AluSc SINE Alu 1 305 -4 1055 236 63 11 chr1 151035325 151035596 -91628757 + L1ME3 LINE L1 5325 5609 -557 2218 103 7 7 chr1 151035599 151035891 -91628462 + AluSx SINE Alu 1 292 -20 737 229 132 19 chr1 151035909 151036175 -91628178 + L1ME3 LINE L1 5866 6161 -1 25 0 0 0 chr1 151036203 151036228 -91628125 + AT_rich Low_complexity Low_complexity 1 25 0 358 330 10 10 chr1 151036236 151036336 -91628017 - MIR SINE MIR -148 114 15 449 79 0 16 chr1 151036336 151036399 -91627954 - MADE1 DNA Mariner 0 80 19 2561 40 7 0 chr1 151038086 151038384 -91625969 + AluSp SINE Alu 1 300 -13 485 324 61 30 chr1 151038396 151038726 -91625627 - L1ME4a LINE L1 -246 5875 5522 2247 218 63 52 chr1 151038726 151039345 -91625008 - MLT1E2 LTR MaLR 0 626 1 485 324 61 30 chr1 151039345 151039521 -91624832 - L1ME4a LINE L1 -599 5522 5353 815 257 25 17 chr1 151039712 151039949 -91624404 - HAL1 LINE L1 -878 1629 1391 420 154 119 77 chr1 151040008 151040151 -91624202 - L1MC5 LINE L1 -5 7956 7808 417 80 0 0 chr1 151040276 151040326 -91624027 - AluSp/q SINE Alu -103 210 161 541 294 15 1 chr1 151040326 151040525 -91623828 - L1M4c LINE L1 -4710 1936 1763 960 114 29 0 chr1 151040543 151040683 -91623670 - AluSp/q SINE Alu -7 306 163 1009 236 31 8 chr1 151040689 151040943 -91623410 - L1M4c LINE L1 -4899 1747 1488 4315 231 52 18 chr1 151040949 151042032 -91622321 - L1M4c LINE L1 -5347 1195 76 1815 151 3 7 chr1 151042668 151042982 -91621371 + AluSx SINE Alu 1 313 0 2076 107 11 4 chr1 151043331 151043642 -91620711 - AluSq SINE Alu 0 313 1 1764 99 0 0 chr1 151043734 151043982 -91620371 - AluSg SINE Alu 0 311 64 219 200 0 0 chr1 151043983 151044023 -91620330 - L2 LINE L2 -8 3305 3266 * 271 252 124 47 chr1 151043989 151044125 -91620228 - MIR3 SINE MIR -8 254 79 1664 166 3 7 chr1 151044137 151044444 -91619909 - AluSx SINE Alu 0 307 2 270 56 0 0 chr1 151044444 151044480 -91619873 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 2273 85 7 0 chr1 151044621 151044914 -91619439 - AluSp SINE Alu -18 295 1 595 208 55 132 chr1 151045788 151045953 -91618400 - L1MC4 LINE L1 -1 8041 7906 1925 161 0 16 chr1 151045953 151046264 -91618089 - AluJb SINE Alu -1 311 6 595 208 55 132 chr1 151046264 151046387 -91617966 - L1MC4 LINE L1 -136 7906 7775 230 196 18 18 chr1 151046385 151046441 -91617912 - L1MC4a LINE L1 -1340 6468 6413 * 405 296 46 42 chr1 151046478 151046655 -91617698 - L1 LINE L1 -1675 4471 4291 2067 122 75 36 chr1 151046655 151046806 -91617547 + THE1C LTR MaLR 1 145 -230 2357 88 10 0 chr1 151046806 151047101 -91617252 - AluSg SINE Alu -11 299 2 2067 122 75 36 chr1 151047101 151047310 -91617043 + THE1C LTR MaLR 145 375 0 405 296 46 42 chr1 151047310 151047416 -91616937 - L1 LINE L1 -1855 4291 4187 32 43 0 0 chr1 151047423 151047469 -91616884 + AT_rich Low_complexity Low_complexity 1 46 0 478 311 147 0 chr1 151047853 151048030 -91616323 - MIR SINE MIR -13 249 47 319 283 199 9 chr1 151048064 151048254 -91616099 - MIR SINE MIR 0 262 38 212 233 122 11 chr1 151048684 151048774 -91615579 - MIR3 SINE MIR -27 181 82 32 0 0 0 chr1 151049392 151049424 -91614929 + GC_rich Low_complexity Low_complexity 1 32 0 34 24 0 0 chr1 151049553 151049594 -91614759 + GC_rich Low_complexity Low_complexity 1 41 0 2458 69 0 7 chr1 151051268 151051573 -91612780 - AluSc SINE Alu -6 303 1 24 0 0 0 chr1 151052012 151052036 -91612317 + AT_rich Low_complexity Low_complexity 1 24 0 401 225 0 12 chr1 151052186 151052266 -91612087 - MIR SINE MIR -86 176 98 180 369 82 31 chr1 151052431 151052686 -91611667 + L2 LINE L2 2553 2820 -494 1374 190 118 0 chr1 151052793 151053056 -91611297 - AluJb SINE Alu -18 294 1 715 244 127 0 chr1 151053565 151053762 -91610591 + MIR SINE MIR 14 235 -27 2208 118 0 3 chr1 151054541 151054838 -91609515 - AluSx SINE Alu -16 296 1 1995 137 10 7 chr1 151055700 151056006 -91608347 - AluSx SINE Alu -3 309 3 2238 118 0 0 chr1 151056564 151056868 -91607485 - AluSx SINE Alu -8 304 1 436 171 61 116 chr1 151056879 151056936 -91607417 - L1ME2 LINE L1 -2 6162 6103 1646 138 8 20 chr1 151056936 151057189 -91607164 - AluSx SINE Alu -15 297 48 1776 103 129 0 chr1 151057199 151057471 -91606882 - AluSx SINE Alu -5 307 1 436 171 61 116 chr1 151057471 151057566 -91606787 - L1ME2 LINE L1 -70 6094 6008 22 70 0 0 chr1 151057941 151057984 -91606369 + AT_rich Low_complexity Low_complexity 1 43 0 1653 166 57 20 chr1 151058991 151059170 -91605183 - AluJb SINE Alu 0 312 116 2262 105 3 0 chr1 151059170 151059464 -91604889 - AluSg SINE Alu -15 295 1 1653 166 57 20 chr1 151059464 151059585 -91604768 - AluJb SINE Alu -196 116 1 407 248 142 9 chr1 151060315 151060428 -91603925 - L2 LINE L2 -1 3312 3185 2246 100 0 19 chr1 151061410 151061721 -91602632 - AluSx SINE Alu -7 305 1 305 340 68 0 chr1 151061957 151062060 -91602293 + MER91C DNA MER1_type 31 140 0 685 345 94 29 chr1 151063211 151063562 -91600791 + L3 LINE CR1 278 651 -926 273 270 70 62 chr1 151063735 151063994 -91600359 + L1M4 LINE L1 4585 4845 -1301 469 206 243 5 chr1 151065458 151065482 -91598871 - L1ME4a LINE L1 -3 6118 6101 2461 77 0 0 chr1 151065482 151065779 -91598574 + AluY SINE Alu 1 297 -14 469 206 243 5 chr1 151065779 151065943 -91598410 - L1ME4a LINE L1 -20 6101 5885 397 226 80 47 chr1 151066003 151066215 -91598138 - L1MC5 LINE L1 -80 7881 7663 2191 117 3 3 chr1 151066735 151067043 -91597310 - AluSx SINE Alu -4 308 1 647 184 222 53 chr1 151068370 151068577 -91595776 + MER46C DNA MER2_type 94 335 -3 439 231 157 14 chr1 151068914 151069061 -91595292 + MIR SINE MIR 2 169 -93 1927 164 3 0 chr1 151069297 151069596 -91594757 + AluSx SINE Alu 1 300 -12 2379 119 0 0 chr1 151069695 151070007 -91594346 - AluSx SINE Alu 0 312 1 538 277 13 13 chr1 151070636 151070795 -91593558 - MIR SINE MIR -2 260 102 222 334 1 62 chr1 151070867 151070945 -91593408 - MIR SINE MIR -94 114 40 2416 65 10 0 chr1 151070945 151071236 -91593117 - AluSx SINE Alu -7 305 12 222 334 1 62 chr1 151071236 151071274 -91593079 - MIR SINE MIR -168 40 1 499 301 188 21 chr1 151072213 151072348 -91592005 - L2 LINE L2 0 3313 3202 1660 167 20 17 chr1 151072348 151072642 -91591711 - AluJo SINE Alu -17 295 1 499 301 188 21 chr1 151072642 151072842 -91591511 - L2 LINE L2 -111 3202 2922 625 259 159 38 chr1 151073117 151073584 -91590769 + LTR50 LTR ERVL 17 635 -160 381 204 31 31 chr1 151073597 151073695 -91590658 + LTR33A LTR ERVL 420 517 -6 432 286 123 0 chr1 151075485 151075688 -91588665 + L3b LINE CR1 1303 1530 -53 378 313 50 45 chr1 151075979 151076180 -91588173 + MIR SINE MIR 20 221 -41 639 233 100 0 chr1 151076567 151076730 -91587623 + MIR SINE MIR 59 234 -28 2224 108 7 0 chr1 151077360 151077689 -91586664 + AluSq SINE Alu 1 313 0 353 171 24 0 chr1 151078243 151078325 -91586028 + GA-rich Low_complexity Low_complexity 2 85 0 210 368 93 28 chr1 151078603 151078785 -91585568 - L3b LINE CR1 -19 1564 1371 180 262 115 33 chr1 151079796 151079857 -91584496 + L2 LINE L2 3240 3305 -8 311 276 58 51 chr1 151079912 151080068 -91584285 - L3b LINE CR1 -325 1258 1102 396 0 0 0 chr1 151080196 151080240 -91584113 + (TG)n Simple_repeat Simple_repeat 1 44 0 454 326 53 21 chr1 151082464 151082651 -91581702 - MIR3 SINE MIR -12 196 4 1483 146 9 105 chr1 151082935 151083068 -91581285 + L1MC1 LINE L1 6025 6169 -164 2367 92 0 0 chr1 151083068 151083363 -91580990 - AluSg SINE Alu -15 295 1 1483 146 9 105 chr1 151083363 151083571 -91580782 + L1MC1 LINE L1 6169 6333 0 1105 207 10 0 chr1 151083882 151084075 -91580278 - AluJo SINE Alu -113 199 5 308 364 0 39 chr1 151084111 151084240 -91580113 + MIR SINE MIR 17 140 -68 187 281 70 35 chr1 151084368 151084482 -91579871 + L2 LINE L2 2945 3062 -210 2226 97 3 31 chr1 151084959 151085280 -91579073 - AluSx SINE Alu 0 312 1 2084 99 0 56 chr1 151085283 151085613 -91578740 - AluSp SINE Alu 0 313 1 2197 107 3 0 chr1 151086506 151086804 -91577549 - AluSx SINE Alu -13 299 1 2169 116 10 0 chr1 151087626 151087919 -91576434 - AluSx SINE Alu -16 296 1 23 0 0 0 chr1 151088514 151088537 -91575816 + AT_rich Low_complexity Low_complexity 1 23 0 344 316 124 6 chr1 151089411 151089588 -91574765 - MIR SINE MIR -16 246 49 474 193 59 102 chr1 151089732 151089919 -91574434 - MER5A DNA MER1_type 0 189 11 4191 152 8 11 chr1 151090410 151091047 -91573306 - MER41B LTR ERV1 0 635 1 183 261 31 15 chr1 151091675 151091740 -91572613 - L2 LINE L2 -685 2629 2564 583 258 44 0 chr1 151092167 151092326 -91572027 + MER103 DNA DNA 1 166 0 382 222 78 11 chr1 151092435 151092525 -91571828 + MIR SINE MIR 37 132 -76 491 245 9 9 chr1 151092876 151092982 -91571371 + MIR3 SINE MIR 55 160 -48 189 0 0 0 chr1 151093287 151093308 -91571045 + (TC)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr1 151093443 151093464 -91570889 + AT_rich Low_complexity Low_complexity 1 21 0 2136 123 0 10 chr1 151093641 151093941 -91570412 - AluSc SINE Alu -12 297 1 2051 123 7 0 chr1 151094192 151094502 -91569851 - AluSq SINE Alu 0 312 1 941 211 0 6 chr1 151094506 151094681 -91569672 - AluSg/x SINE Alu -17 295 122 1941 142 31 0 chr1 151094832 151095121 -91569232 + AluSx SINE Alu 1 298 -14 2261 126 3 0 chr1 151096183 151096492 -91567861 + AluSx SINE Alu 1 310 -2 3600 132 29 10 chr1 151096719 151097236 -91567117 - MER1A DNA MER1_type 0 527 1 2225 121 0 3 chr1 151098556 151098869 -91565484 - AluSx SINE Alu 0 312 1 23 0 0 0 chr1 151098871 151098894 -91565459 + AT_rich Low_complexity Low_complexity 1 23 0 2203 105 3 0 chr1 151098897 151099191 -91565162 - AluSx SINE Alu -17 295 1 916 225 5 29 chr1 151099859 151100068 -91564285 + MER3 DNA MER1_type 6 209 0 199 318 0 0 chr1 151100140 151100184 -91564169 + L2 LINE L2 3210 3253 -19 993 154 28 0 chr1 151100616 151100798 -91563555 + L1MA7 LINE L1 6105 6291 0 944 130 7 27 chr1 151100801 151100947 -91563406 + FLAM_C SINE Alu 1 143 0 1578 134 0 9 chr1 151101448 151101680 -91562673 + AluSq SINE Alu 1 230 -83 1163 212 18 36 chr1 151102722 151102944 -91561409 + MER20 DNA MER1_type 2 219 0 230 320 120 0 chr1 151104510 151104610 -91559743 - L2 LINE L2 -23 3290 3179 260 100 100 0 chr1 151104733 151104773 -91559580 - MLT2B1 LTR ERVL 0 515 472 * 321 71 0 0 chr1 151104771 151104813 -91559540 - MADE1 DNA Mariner -34 46 5 2943 121 76 0 chr1 151104814 151105261 -91559092 - MLT2B1 LTR ERVL -39 481 1 2203 108 24 0 chr1 151105311 151105608 -91558745 - AluSq SINE Alu -9 304 1 683 212 94 24 chr1 151105773 151105943 -91558410 + MER5A DNA MER1_type 8 189 0 2046 99 0 7 chr1 151105980 151106262 -91558091 - L1PA16 LINE L1 -272 5894 5615 1474 133 42 57 chr1 151106262 151106517 -91557836 + L1PA16 LINE L1 5899 6157 -9 2147 82 44 14 chr1 151106702 151106996 -91557357 + AluSg SINE Alu 1 303 -7 411 322 34 28 chr1 151107034 151107211 -91557142 - MER5B DNA MER1_type 0 178 1 2293 112 0 0 chr1 151107587 151107891 -91556462 + AluSx SINE Alu 1 304 -8 33 43 0 0 chr1 151108702 151108749 -91555604 + AT_rich Low_complexity Low_complexity 1 47 0 1715 160 6 51 chr1 151108755 151108923 -91555430 - AluJo SINE Alu -13 299 150 1935 90 4 38 chr1 151108923 151109190 -91555163 - AluSp SINE Alu -15 298 41 1715 160 6 51 chr1 151109190 151109334 -91555019 - AluJo SINE Alu -162 150 1 908 248 48 9 chr1 151109424 151109654 -91554699 - MIR SINE MIR -4 258 20 189 175 0 0 chr1 151109869 151109909 -91554444 + (TATATG)n Simple_repeat Simple_repeat 4 43 0 1702 159 26 0 chr1 151109911 151110181 -91554172 - AluJo SINE Alu -31 281 5 360 158 27 189 chr1 151110202 151110282 -91554071 - L1MC5 LINE L1 -294 7667 7576 1926 140 7 7 chr1 151110282 151110582 -91553771 - AluJb SINE Alu -12 300 1 360 158 27 189 chr1 151110582 151110760 -91553593 - L1MC5 LINE L1 -385 7576 7451 1823 165 0 7 chr1 151162386 151162683 -91501670 - AluJo SINE Alu -17 295 1 243 93 139 0 chr1 151163150 151163193 -91501160 + LTR1 LTR ERV1 1 49 -736 3471 110 46 113 chr1 151163198 151163941 -91500412 + LTR1 LTR ERV1 1 693 -92 11599 204 55 29 chr1 151164047 151166062 -91498291 - L1M3 LINE L1 -373 6031 4070 1216 79 56 11 chr1 151166062 151166240 -91498113 - L1PA12 LINE L1 -15 6153 5968 11599 204 55 29 chr1 151166240 151168141 -91496212 - L1M3 LINE L1 -2334 4070 2018 1210 232 67 14 chr1 151168274 151168619 -91495734 + MLT1A1 LTR MaLR 1 363 -2 282 316 73 22 chr1 151169080 151169216 -91495137 - MIR SINE MIR -117 145 3 575 320 53 35 chr1 151170118 151170402 -91493951 + L2 LINE L2 1529 1817 -1497 246 32 0 0 chr1 151170730 151170761 -91493592 + (CA)n Simple_repeat Simple_repeat 2 32 0 400 315 30 24 chr1 151170793 151170836 -91493517 - L1M4 LINE L1 -1432 4714 4673 219 69 0 0 chr1 151170836 151170865 -91493488 + (TTA)n Simple_repeat Simple_repeat 2 30 0 400 315 30 24 chr1 151170865 151171151 -91493202 - L1M4 LINE L1 -1473 4673 4383 3170 148 111 25 chr1 151171183 151171832 -91492521 + MER39 LTR ERV1 1 705 -2 3973 192 54 21 chr1 151171873 151172837 -91491516 - L1MC3 LINE L1 0 7785 6790 3572 260 85 31 chr1 151172851 151174813 -91489540 - L1MC3 LINE L1 -1481 6304 3076 358 239 54 0 chr1 151175043 151175135 -91489218 - MER21B LTR ERV1 -109 754 658 1459 246 132 92 chr1 151175143 151175815 -91488538 - MER21B LTR ERV1 -152 711 13 327 312 0 56 chr1 151176062 151176106 -91488247 + L1ME LINE L1 270 315 -5755 3177 145 15 17 chr1 151176106 151176638 -91487715 - LTR26B LTR ERV1 0 531 1 327 312 0 56 chr1 151176638 151176718 -91487635 + L1ME LINE L1 315 387 -5683 330 158 132 11 chr1 151176779 151176902 -91487451 + FRAM SINE Alu 1 106 -60 21 0 0 0 chr1 151177071 151177092 -91487261 + AT_rich Low_complexity Low_complexity 1 21 0 810 221 101 39 chr1 151177489 151177747 -91486606 - LTR48 LTR ERV1 0 787 514 * 812 178 108 54 chr1 151177715 151177956 -91486397 - LTR48 LTR ERV1 -533 254 1 1253 234 128 41 chr1 151178117 151178655 -91485698 - MER34C LTR ERV1 0 585 1 1880 144 37 40 chr1 151179131 151179507 -91484846 - THE1C LTR MaLR 0 375 1 6075 221 31 11 chr1 151179959 151182464 -91481889 - L1PA12 LINE L1 -3678 3906 1394 742 100 0 0 chr1 151182567 151182667 -91481686 - AluS SINE Alu -211 102 3 324 306 62 4 chr1 151182668 151182796 -91481557 - L1 LINE L1 -1328 4818 4688 347 326 0 0 chr1 151183257 151183352 -91481001 + MER5A DNA MER1_type 94 188 -1 453 255 73 12 chr1 151183361 151183535 -91480818 + MER20 DNA MER1_type 1 219 0 199 333 18 89 chr1 151183811 151183979 -91480374 - MIR SINE MIR -10 252 97 2367 92 50 34 chr1 151184047 151184405 -91479948 - THE1B LTR MaLR 0 364 1 252 254 28 0 chr1 151184499 151184570 -91479783 - MIR SINE MIR -64 144 72 3063 221 37 48 chr1 151185479 151185982 -91478371 - L1MB8 LINE L1 -16 6162 5671 4433 56 0 12 chr1 151185982 151186550 -91477803 + L1PA8 LINE L1 5612 6172 0 3063 221 37 48 chr1 151186550 151187010 -91477343 - L1MB8 LINE L1 -507 5671 5208 287 238 24 0 chr1 151187401 151187485 -91476868 + L1 LINE L1 2816 2901 -3245 2087 121 24 40 chr1 151187635 151188015 -91476338 + THE1C LTR MaLR 2 375 0 9439 118 44 39 chr1 151188015 151189586 -91474767 + THE1C-int LTR MaLR 1 1579 -1 1837 146 49 32 chr1 151189587 151189956 -91474397 + THE1C LTR MaLR 1 375 0 321 247 82 25 chr1 151190259 151190417 -91473936 - L1M4c LINE L1 -4201 2183 2017 4897 171 20 46 chr1 151190467 151191733 -91472620 - L1MA3 LINE L1 -1 6304 5070 2584 171 51 2 chr1 151191731 151192245 -91472108 + L1MA3 LINE L1 4530 5068 -1078 * 432 358 21 5 chr1 151192940 151193133 -91471220 - MIR SINE MIR -10 252 57 2606 220 65 5 chr1 151193234 151193834 -91470519 - L1MC3 LINE L1 -997 6788 6153 3511 189 49 5 chr1 151193953 151194709 -91469644 + L1MC3 LINE L1 6990 7778 -7 400 296 101 6 chr1 151195267 151195426 -91468927 - MIR SINE MIR -40 222 49 1167 317 85 51 chr1 151195847 151196615 -91467738 + L2 LINE L2 2266 3054 -259 365 176 0 14 chr1 151197018 151197092 -91467261 + L1MA4 LINE L1 5379 5451 -849 299 0 0 0 chr1 151197092 151197125 -91467228 + U2 snRNA snRNA 1 33 -155 4949 143 11 7 chr1 151197125 151197477 -91466876 + L1MA4 LINE L1 5438 5787 -513 225 0 0 0 chr1 151197477 151197502 -91466851 + (CA)n Simple_repeat Simple_repeat 2 26 0 4949 143 11 7 chr1 151197502 151197997 -91466356 + L1MA4 LINE L1 5787 6288 -12 1475 179 72 4 chr1 151198137 151198436 -91465917 - AluJb SINE Alu 0 318 2 512 135 135 0 chr1 151199416 151199505 -91464848 - L1P4 LINE L1 -551 5612 5512 2151 83 10 0 chr1 151199507 151199807 -91464546 + L1PA13 LINE L1 5861 6163 0 192 40 0 0 chr1 151200487 151200512 -91463841 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2189 192 60 24 chr1 151200592 151201055 -91463298 + MLT2B1 LTR ERVL 1 480 -40 261 193 7 57 chr1 151201073 151201213 -91463140 + (TA)n Simple_repeat Simple_repeat 1 133 0 490 297 55 7 chr1 151201316 151201589 -91462764 + L1ME LINE L1 4046 4331 -1815 1113 250 73 31 chr1 151201691 151202428 -91461925 + L1ME LINE L1 4942 5703 -467 3194 229 30 66 chr1 151202655 151204025 -91460328 + L1M1 LINE L1 17 1286 -6279 1125 225 9 102 chr1 151204913 151205246 -91459107 - AluJb SINE Alu 0 302 1 209 180 20 0 chr1 151205589 151205639 -91458714 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1315 159 19 56 chr1 151206693 151207508 -91456845 - L1MB4 LINE L1 -82 6098 5199 30 0 0 0 chr1 151208892 151208922 -91455431 + AT_rich Low_complexity Low_complexity 1 30 0 306 295 134 7 chr1 151208993 151209142 -91455211 + L1MEd LINE L1 832 999 -5120 188 286 169 13 chr1 151209335 151209412 -91454941 - MIR3 SINE MIR -118 90 2 268 326 35 12 chr1 151209717 151209803 -91454550 - MIR3 SINE MIR -27 181 94 2257 171 37 33 chr1 151209992 151210447 -91453906 + MSTB2 LTR MaLR 1 457 0 22 35 0 0 chr1 151210817 151210846 -91453507 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 151211030 151211054 -91453299 + AT_rich Low_complexity Low_complexity 1 24 0 313 361 19 6 chr1 151211112 151211270 -91453083 - L2 LINE L2 -1264 2050 1891 611 258 32 77 chr1 151211413 151211634 -91452719 + MLT1I LTR MaLR 199 409 0 2122 118 0 0 chr1 151211972 151212274 -91452079 - AluSc SINE Alu 0 302 1 764 312 79 34 chr1 151212571 151213327 -91451026 + L1MEd LINE L1 461 1250 -4869 282 116 0 0 chr1 151213339 151213382 -91450971 + (GGGAA)n Simple_repeat Simple_repeat 2 44 0 684 293 73 14 chr1 151213568 151213855 -91450498 - L2 LINE L2 -2 3311 3008 754 214 6 0 chr1 151214045 151214223 -91450130 - L1 LINE L1 -812 5334 5156 287 282 102 14 chr1 151214586 151214802 -91449551 + L1MEd LINE L1 2115 2349 -3780 3816 99 30 17 chr1 151214867 151215460 -91448893 - L1PB2 LINE L1 -3 6148 5548 1392 130 5 14 chr1 151215469 151215684 -91448669 + THE1-int LTR MaLR 1188 1400 -180 1740 137 37 10 chr1 151215693 151216093 -91448260 - L1PB2 LINE L1 -584 5567 5160 504 227 166 65 chr1 151217436 151217665 -91446688 + MIR SINE MIR 11 262 0 252 0 0 0 chr1 151218531 151218559 -91445794 + (TG)n Simple_repeat Simple_repeat 1 28 0 1396 296 146 24 chr1 151218981 151219868 -91444485 - L2 LINE L2 0 3313 2312 289 313 73 20 chr1 151220076 151220226 -91444127 - MIR SINE MIR -21 241 84 7180 206 19 16 chr1 151220434 151221865 -91442488 - L1M1 LINE L1 -6005 1560 126 356 338 60 13 chr1 151221885 151222036 -91442317 + L3 LINE CR1 1409 1566 -11 463 170 70 0 chr1 151222043 151222143 -91442210 - L1M1 LINE L1 -7434 131 25 372 335 58 31 chr1 151222146 151222337 -91442016 - MIR SINE MIR -65 197 2 2217 61 46 0 chr1 151222367 151222647 -91441706 + AluY SINE Alu 3 295 -16 2364 89 3 0 chr1 151222658 151222961 -91441392 + AluSg SINE Alu 1 304 -6 566 318 37 37 chr1 151224408 151224732 -91439621 + L2 LINE L2 2142 2465 -849 5988 141 18 20 chr1 151224745 151226598 -91437755 - L1MA2 LINE L1 0 7723 5876 8316 161 18 9 chr1 151226657 151229242 -91435111 - L1MA2 LINE L1 -2716 4849 2246 3122 196 23 25 chr1 151229691 151230440 -91433913 - L1 LINE L1 -2195 5370 4624 * 5374 208 12 5 chr1 151230436 151231642 -91432711 + L1 LINE L1 3951 5164 -982 3757 84 59 11 chr1 151231742 151232299 -91432054 - L1PA8A LINE L1 -28 6103 5520 505 214 41 106 chr1 151232396 151232804 -91431549 - L1MC4a LINE L1 -1741 6067 5674 553 306 153 9 chr1 151233613 151233835 -91430518 + MIR SINE MIR 8 261 -1 242 350 0 0 chr1 151233899 151233979 -91430374 + L2 LINE L2 3234 3313 0 201 196 0 0 chr1 151234221 151234267 -91430086 + (CATATA)n Simple_repeat Simple_repeat 4 49 0 1474 296 80 7 chr1 151234653 151235203 -91429150 + L2 LINE L2 2293 2882 -432 310 259 27 9 chr1 151235218 151235330 -91429023 - HAL1 LINE L1 -150 2357 2244 411 303 96 76 chr1 151235331 151235737 -91428616 + L2 LINE L2 2898 3311 -2 22 0 0 0 chr1 151236024 151236046 -91428307 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 151236101 151236122 -91428231 + AT_rich Low_complexity Low_complexity 1 21 0 743 283 59 40 chr1 151236682 151236964 -91427389 - HAL1 LINE L1 -5 2502 2208 425 19 19 0 chr1 151236964 151237018 -91427335 + (CA)n Simple_repeat Simple_repeat 2 56 0 743 283 59 40 chr1 151237018 151237156 -91427197 - HAL1 LINE L1 -299 2208 2074 17313 29 0 2 chr1 151237408 151240147 -91424206 - L1PA2 LINE L1 -202 5953 3219 783 277 15 59 chr1 151240347 151240618 -91423735 - MIR SINE MIR -2 260 2 1187 289 87 62 chr1 151240667 151241596 -91422757 - HAL1 LINE L1 -1554 953 2 2353 93 3 3 chr1 151242140 151242442 -91421911 - AluSq SINE Alu -11 302 1 207 323 160 38 chr1 151243390 151243734 -91420619 + L2 LINE L2 2583 2968 -346 618 331 180 24 chr1 151244073 151244607 -91419746 + L3 LINE CR1 915 1531 -46 24 53 0 0 chr1 151245146 151245184 -91419169 + AT_rich Low_complexity Low_complexity 1 38 0 211 135 27 0 chr1 151245789 151245826 -91418527 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 334 268 41 41 chr1 151245857 151245980 -91418373 - MLT1I LTR MaLR -81 328 206 6238 161 17 3 chr1 151246176 151247895 -91416458 - L1PA15 LINE L1 -323 5842 4106 671 294 51 15 chr1 151248054 151248251 -91416102 - MIR SINE MIR -26 236 33 570 312 68 36 chr1 151248855 151249105 -91415248 + MIR SINE MIR 3 260 -2 2643 208 48 24 chr1 151249305 151250084 -91414269 - L1M LINE L1 -771 5375 4598 332 290 21 0 chr1 151250091 151250184 -91414169 - L1MEc LINE L1 -5501 895 801 37799 71 10 11 chr1 151250214 151256359 -91407994 + L1PA6 LINE L1 14 6151 -3 343 152 15 0 chr1 151256372 151256438 -91407915 + MER53 DNA DNA 122 188 -1 1105 241 22 6 chr1 151256441 151256752 -91407601 - L1MEc LINE L1 -6046 350 35 242 313 28 83 chr1 151261096 151261240 -91403113 - L2 LINE L2 0 3272 3137 257 358 8 22 chr1 151261479 151261613 -91402740 - L2 LINE L2 -206 3066 2935 200 176 0 0 chr1 151261765 151261799 -91402554 + GA-rich Low_complexity Low_complexity 3 36 0 228 362 112 19 chr1 151261842 151262154 -91402199 - L2 LINE L2 -562 2752 2412 * 251 235 0 0 chr1 151262151 151262202 -91402151 - L2 LINE L2 0 3313 3263 184 339 36 0 chr1 151262270 151262382 -91401971 - L2 LINE L2 -942 2372 2257 34 24 0 0 chr1 151263355 151263396 -91400957 + AT_rich Low_complexity Low_complexity 1 41 0 302 289 44 0 chr1 151264297 151264387 -91399966 + MIR3 SINE MIR 67 160 -48 470 171 34 17 chr1 151264427 151264544 -91399809 - ORSL DNA AcHobo -7 268 150 261 0 0 0 chr1 151264565 151264594 -91399759 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 316 0 0 chr1 151264626 151264724 -91399629 - L1MC4 LINE L1 -1341 6701 6604 384 214 0 0 chr1 151264724 151264841 -91399512 + (TA)n Simple_repeat Simple_repeat 1 117 0 323 268 76 32 chr1 151264917 151265074 -91399279 + MIR3 SINE MIR 45 208 0 2195 116 0 0 chr1 151266494 151266788 -91397565 - AluSx SINE Alu -18 294 1 900 288 24 35 chr1 151266789 151266837 -91397516 - L1MC4a LINE L1 -884 6924 6877 1881 122 26 56 chr1 151266837 151267141 -91397212 - AluSx SINE Alu -17 295 1 900 288 24 35 chr1 151267141 151267463 -91396890 - L1MC4a LINE L1 -931 6877 6558 186 43 0 0 chr1 151268035 151268058 -91396295 + (A)n Simple_repeat Simple_repeat 1 23 0 1851 163 0 0 chr1 151268221 151268498 -91395855 + AluJb SINE Alu 35 311 -1 21 0 0 0 chr1 151268945 151268966 -91395387 + AT_rich Low_complexity Low_complexity 1 21 0 277 288 43 25 chr1 151269432 151269595 -91394758 + MER112 DNA MER1_type 88 253 -7 2127 121 10 0 chr1 151270397 151270694 -91393659 + AluSg SINE Alu 5 304 -6 329 352 0 19 chr1 151271272 151271377 -91392976 - MER5B DNA MER1_type -74 104 2 345 24 0 0 chr1 151271454 151271496 -91392857 + (TG)n Simple_repeat Simple_repeat 2 43 0 222 333 27 0 chr1 151273099 151273174 -91391179 - L2 LINE L2 -8 3305 3229 223 282 86 43 chr1 151274440 151274557 -91389796 - MIR3 SINE MIR -32 176 55 217 320 51 0 chr1 151279096 151279174 -91385179 - L2 LINE L2 -5 3267 3186 418 372 72 21 chr1 151280470 151280846 -91383507 - HAL1b LINE L1 -586 762 368 377 264 76 39 chr1 151280914 151281244 -91383109 - L1ME4a LINE L1 -105 6016 5675 244 306 10 117 chr1 151281326 151281478 -91382875 + MIR SINE MIR 4 132 -130 1733 180 44 0 chr1 151281478 151281772 -91382581 + 7SLRNA srpRNA srpRNA 5 311 -9 244 306 10 117 chr1 151281772 151281815 -91382538 + MIR SINE MIR 132 178 -84 645 339 52 7 chr1 151285032 151285339 -91379014 + L3 LINE CR1 1254 1574 -3 485 319 11 55 chr1 151285843 151286025 -91378328 + MIR3 SINE MIR 17 190 -18 25 31 0 0 chr1 151286482 151286514 -91377839 + AT_rich Low_complexity Low_complexity 1 32 0 641 228 69 0 chr1 151288457 151288659 -91375694 - L1MD3 LINE L1 -9 7986 7771 23 33 0 0 chr1 151289648 151289678 -91374675 + AT_rich Low_complexity Low_complexity 1 30 0 2234 91 3 47 chr1 151290197 151290332 -91374021 + AluSx SINE Alu 1 140 -172 270 81 0 0 chr1 151290332 151290369 -91373984 + (TA)n Simple_repeat Simple_repeat 2 38 0 2234 91 3 47 chr1 151290369 151290552 -91373801 + AluSx SINE Alu 140 305 -7 289 148 98 0 chr1 151290825 151290886 -91373467 + MER5C DNA MER1_type 54 120 -204 3932 104 17 27 chr1 151290886 151291272 -91373081 - MER51C LTR ERV1 0 640 280 4544 69 59 5 chr1 151291272 151291898 -91372455 + PABL_A LTR ERV1 1 660 0 3932 104 17 27 chr1 151291898 151292176 -91372177 - MER51C LTR ERV1 -360 280 1 623 182 176 0 chr1 151292177 151292353 -91372000 + MER5C DNA MER1_type 118 324 0 2366 90 0 13 chr1 151295315 151295625 -91368728 - AluSg SINE Alu -4 306 1 264 108 0 0 chr1 151295709 151295746 -91368607 - Alu SINE Alu -264 37 1 235 189 0 0 chr1 151295834 151295871 -91368482 - Alu SINE Alu -263 37 1 238 277 43 92 chr1 151296057 151296198 -91368155 - MIR3 SINE MIR -65 143 10 21 36 0 0 chr1 151296357 151296385 -91367968 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 151298862 151298890 -91365463 + AT_rich Low_complexity Low_complexity 1 28 0 5811 159 33 31 chr1 151300535 151301127 -91363226 - L1MC3 LINE L1 -27 7758 7168 2322 104 7 0 chr1 151301127 151301436 -91362917 + AluSp SINE Alu 1 311 -2 5811 159 33 31 chr1 151301436 151302084 -91362269 - L1MC3 LINE L1 -617 7168 6516 598 272 77 20 chr1 151302590 151302836 -91361517 - MIR SINE MIR -1 261 2 187 344 16 0 chr1 151303159 151303220 -91361133 - L2 LINE L2 -5 3267 3206 1878 140 47 4 chr1 151303403 151303682 -91360671 - AluSx SINE Alu -21 291 1 708 274 121 5 chr1 151303708 151303898 -91360455 + MIR SINE MIR 17 228 -34 381 344 6 11 chr1 151303905 151304085 -91360268 + (TG)n Simple_repeat Simple_repeat 2 180 0 207 239 57 0 chr1 151305053 151305141 -91359212 + A-rich Low_complexity Low_complexity 2 94 0 204 349 61 0 chr1 151305592 151305658 -91358695 + L2 LINE L2 3197 3266 -47 291 322 0 17 chr1 151307249 151307364 -91356989 - MER117 DNA MER1_type -52 145 33 381 317 196 40 chr1 151308008 151308361 -91355992 + L2 LINE L2 2860 3267 -5 268 218 27 64 chr1 151308882 151308992 -91355361 - MER103 DNA DNA -11 155 50 298 197 0 30 chr1 151309268 151309334 -91355019 + MIR3 SINE MIR 121 184 -24 28165 39 7 1 chr1 151309383 151313797 -91350556 - L1PA5 LINE L1 0 6154 1720 455 246 7 28 chr1 151313960 151314102 -91350251 - MLT1J LTR MaLR -24 487 349 393 253 121 39 chr1 151314163 151314345 -91350008 - MLT1J LTR MaLR -265 246 50 1848 146 7 11 chr1 151314811 151315098 -91349255 + AluJb SINE Alu 1 286 -26 24 0 0 0 chr1 151315102 151315126 -91349227 + AT_rich Low_complexity Low_complexity 1 24 0 2228 110 0 0 chr1 151315307 151315599 -91348754 + AluSg SINE Alu 1 292 -18 21 82 0 0 chr1 151316176 151316225 -91348128 + AT_rich Low_complexity Low_complexity 1 49 0 438 283 133 6 chr1 151316309 151316482 -91347871 - MIR SINE MIR -8 254 60 247 222 111 0 chr1 151316522 151316576 -91347777 + MIR3 SINE MIR 101 160 -48 1769 157 61 0 chr1 151316824 151317117 -91347236 + AluJb SINE Alu 1 311 -1 618 246 82 78 chr1 151317179 151317411 -91346942 + MIR SINE MIR 20 252 -10 222 133 33 33 chr1 151317686 151317746 -91346607 + (CA)n Simple_repeat Simple_repeat 2 61 0 731 231 17 17 chr1 151318271 151318444 -91345909 + MIR3 SINE MIR 30 202 -6 317 361 6 42 chr1 151319639 151319805 -91344548 - MIR3 SINE MIR -2 206 47 27 0 0 0 chr1 151320558 151320585 -91343768 + AT_rich Low_complexity Low_complexity 1 27 0 281 311 11 56 chr1 151321011 151321191 -91343162 + MIR SINE MIR 65 236 -26 293 254 55 133 chr1 151321334 151321515 -91342838 + MIR SINE MIR 9 175 -87 245 217 167 0 chr1 151321895 151321955 -91342398 - L2 LINE L2 0 3272 3203 280 259 64 62 chr1 151321956 151322191 -91342162 + L1MEd LINE L1 1076 1353 -4862 815 168 0 0 chr1 151322240 151322365 -91341988 + FLAM_C SINE Alu 3 127 -16 2693 241 43 25 chr1 151322371 151323436 -91340917 - L1M4 LINE L1 -2365 3781 2698 338 269 19 46 chr1 151323439 151323547 -91340806 - L1ME LINE L1 -5926 144 40 510 276 117 53 chr1 151323879 151324144 -91340209 + L2 LINE L2 3032 3313 0 2514 188 78 3 chr1 151325476 151326044 -91338309 + LTR31 LTR ERV1 1 610 -9 959 192 157 91 chr1 151326866 151327352 -91337001 + MLT1E2 LTR MaLR 115 626 0 641 246 96 61 chr1 151327548 151327818 -91336535 + L1MC/D LINE L1 5391 5681 -2127 893 279 30 15 chr1 151327818 151328151 -91336202 - MER46C DNA MER2_type 0 338 1 641 246 96 61 chr1 151328151 151328275 -91336078 + L1MC/D LINE L1 5681 5799 -2009 215 125 25 0 chr1 151328407 151328447 -91335906 + (CATA)n Simple_repeat Simple_repeat 2 42 0 274 43 0 22 chr1 151329033 151329079 -91335274 - AluSc SINE Alu -1 298 254 815 279 86 0 chr1 151330379 151330601 -91333752 - MIR SINE MIR -21 241 1 207 0 0 0 chr1 151330616 151330639 -91333714 + (TC)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr1 151331442 151331470 -91332883 + AT_rich Low_complexity Low_complexity 1 28 0 1769 135 59 20 chr1 151332205 151332503 -91331850 + L1MB3 LINE L1 5828 6142 -41 1615 108 0 0 chr1 151332503 151332716 -91331637 - AluSp SINE Alu -16 297 85 1769 135 59 20 chr1 151332716 151332758 -91331595 + L1MB3 LINE L1 6142 6181 -2 2959 176 50 16 chr1 151332760 151333861 -91330492 - L1M3 LINE L1 -361 5822 4674 384 313 70 43 chr1 151333862 151333942 -91330411 + L1M3 LINE L1 4606 4682 -1464 1622 125 73 62 chr1 151333942 151334118 -91330235 - AluSx SINE Alu -20 292 110 1809 162 7 19 chr1 151334118 151334426 -91329927 + AluSx SINE Alu 1 304 -8 1622 125 73 62 chr1 151334426 151334538 -91329815 - AluSx SINE Alu -202 110 1 384 313 70 43 chr1 151334538 151334687 -91329666 + L1M4 LINE L1 4682 4841 -1305 203 258 32 0 chr1 151334816 151334878 -91329475 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 342 250 97 27 chr1 151335069 151335290 -91329063 + L1P4 LINE L1 5254 5490 -675 1463 158 35 51 chr1 151335487 151335803 -91328550 + MSTC LTR MaLR 118 428 0 738 136 14 7 chr1 151336140 151336287 -91328066 + CT-rich Low_complexity Low_complexity 2 149 0 967 131 32 4 chr1 151336473 151336725 -91327628 + CT-rich Low_complexity Low_complexity 1 258 0 2202 102 7 13 chr1 151336725 151337030 -91327323 - AluSx SINE Alu -9 303 1 681 295 25 25 chr1 151337893 151338093 -91326260 + MIR SINE MIR 5 204 -58 1008 281 78 24 chr1 151338399 151338507 -91325846 - MLT1J1 LTR MaLR 0 446 345 4183 81 2 0 chr1 151338507 151339060 -91325293 + MER41A LTR ERV1 1 554 0 1008 281 78 24 chr1 151339060 151339361 -91324992 - MLT1J1 LTR MaLR -101 345 15 186 273 0 0 chr1 151339439 151339483 -91324870 + L2 LINE L2 3210 3253 -19 324 271 158 30 chr1 151340151 151340284 -91324069 - MIR SINE MIR -29 233 84 480 112 101 0 chr1 151340354 151340443 -91323910 + MER4A LTR ERV1 1 98 -566 1518 108 22 110 chr1 151340452 151340822 -91323531 + MER4A LTR ERV1 269 664 0 376 256 60 15 chr1 151341144 151341277 -91323076 - Charlie1 DNA MER1_type -2570 191 53 2050 204 62 2 chr1 151341544 151341976 -91322377 - LTR32 LTR ERVL 0 471 14 2026 120 3 57 chr1 151343372 151343688 -91320665 - AluSq SINE Alu -14 299 1 25 31 0 0 chr1 151344507 151344539 -91319814 + AT_rich Low_complexity Low_complexity 1 32 0 36 108 0 0 chr1 151344790 151344938 -91319415 + AT_rich Low_complexity Low_complexity 1 148 0 2207 192 70 82 chr1 151345553 151346252 -91318101 + LTR8 LTR ERV1 1 691 0 622 174 26 22 chr1 151346787 151347017 -91317336 + GA-rich Low_complexity Low_complexity 1 231 0 2445 54 0 7 chr1 151347017 151347311 -91317042 + AluY SINE Alu 1 292 -19 898 113 12 0 chr1 151347311 151347471 -91316882 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 276 231 8 77 chr1 151347487 151347604 -91316749 + MER103 DNA DNA 55 163 -3 250 305 53 8 chr1 151347730 151347861 -91316492 + L1ME4a LINE L1 5963 6099 -22 24 32 0 0 chr1 151347874 151347905 -91316448 + AT_rich Low_complexity Low_complexity 1 31 0 235 208 104 39 chr1 151348048 151348125 -91316228 - MER117 DNA MER1_type -109 88 7 187 271 34 59 chr1 151348239 151348357 -91315996 + L2 LINE L2 3194 3308 -5 2502 72 0 0 chr1 151348703 151349052 -91315301 - L1P5 LINE L1 -440 5711 5363 2276 56 4 0 chr1 151349052 151349320 -91315033 - AluY SINE Alu -7 304 36 184 273 0 0 chr1 151349499 151349543 -91314810 + L2 LINE L2 3263 3306 -7 504 244 79 24 chr1 151350966 151351164 -91313189 + MIR SINE MIR 34 232 -30 225 0 0 0 chr1 151351433 151351458 -91312895 + (T)n Simple_repeat Simple_repeat 1 25 0 258 229 33 0 chr1 151351750 151351811 -91312542 + L2 LINE L2 3208 3270 -2 401 227 45 9 chr1 151351960 151352070 -91312283 + MLT1C LTR MaLR 121 234 -233 3434 158 18 5 chr1 151352170 151353093 -91311260 - L1P5 LINE L1 -604 6263 5329 5005 203 78 6 chr1 151353094 151355124 -91309229 - L1P5 LINE L1 -4463 2400 80 357 279 99 29 chr1 151355289 151355461 -91308892 - L1MEc LINE L1 -4576 1820 1637 3193 242 83 22 chr1 151355475 151357113 -91307240 - L1ME2 LINE L1 0 7583 5770 1779 110 114 11 chr1 151357113 151357385 -91306968 - AluSg SINE Alu -10 300 1 3193 242 83 22 chr1 151357385 151357956 -91306397 - L1ME2 LINE L1 -1813 5770 5235 282 221 15 0 chr1 151357962 151358030 -91306323 + MSTB1 LTR MaLR 359 427 -5 2865 253 36 30 chr1 151358037 151359504 -91304849 - L1ME2 LINE L1 -3372 4193 2668 2264 87 18 0 chr1 151359538 151359824 -91304529 - AluSg SINE Alu -19 291 1 836 260 65 16 chr1 151359841 151360149 -91304204 - L1ME2 LINE L1 -6036 1710 1388 288 308 231 0 chr1 151360149 151360318 -91304035 - MIR SINE MIR -8 254 47 691 257 38 14 chr1 151360542 151360752 -91303601 - L1ME2 LINE L1 -6144 1602 1388 306 306 210 11 chr1 151360752 151360938 -91303415 - MIR SINE MIR -8 254 32 206 328 0 0 chr1 151362705 151362769 -91301584 + GA-rich Low_complexity Low_complexity 1 64 0 2220 105 0 3 chr1 151363308 151363602 -91300751 + AluSg SINE Alu 1 293 -17 287 303 79 0 chr1 151363926 151364002 -91300351 + L2 LINE L2 3160 3241 -31 235 196 0 20 chr1 151365081 151365132 -91299221 - L2 LINE L2 -8 3305 3256 284 270 191 9 chr1 151365191 151365306 -91299047 + MIR SINE MIR 115 250 -12 22 56 0 0 chr1 151365415 151365451 -91298902 + AT_rich Low_complexity Low_complexity 1 36 0 197 227 45 114 chr1 151365757 151365845 -91298508 - MIR3 SINE MIR -14 194 113 322 292 109 36 chr1 151365897 151366034 -91298319 + MIR3 SINE MIR 1 147 -61 198 225 84 56 chr1 151366045 151366116 -91298237 - MIR SINE MIR -6 256 184 215 375 75 0 chr1 151366184 151366264 -91298089 - MER5A DNA MER1_type -84 105 20 302 318 99 83 chr1 151366293 151366967 -91297386 - L2 LINE L2 -43 3229 2550 197 227 45 114 chr1 151367377 151367465 -91296888 - MIR3 SINE MIR -14 194 113 322 292 109 36 chr1 151367517 151367654 -91296699 + MIR3 SINE MIR 1 147 -61 198 225 84 56 chr1 151367665 151367736 -91296617 - MIR SINE MIR -6 256 184 215 375 75 0 chr1 151367804 151367884 -91296469 - MER5A DNA MER1_type -84 105 20 302 327 77 93 chr1 151367913 151368822 -91295531 - L2 LINE L2 -43 3229 2340 1947 169 12 68 chr1 151369594 151370007 -91294346 - MLT1B LTR MaLR 0 390 1 22 88 0 0 chr1 151372214 151372271 -91292082 + AT_rich Low_complexity Low_complexity 1 57 0 295 229 205 6 chr1 151372438 151372569 -91291784 - MIR SINE MIR -62 146 2 848 223 62 33 chr1 151373468 151373679 -91290674 + MER20 DNA MER1_type 1 217 -2 263 263 88 43 chr1 151373694 151373859 -91290494 - MIR SINE MIR -65 143 22 234 0 0 0 chr1 151374019 151374045 -91290308 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr1 151374467 151374492 -91289861 + (A)n Simple_repeat Simple_repeat 1 25 0 2437 35 42 0 chr1 151374942 151375228 -91289125 + AluY SINE Alu 1 298 -13 22 0 0 0 chr1 151375622 151375644 -91288709 + AT_rich Low_complexity Low_complexity 1 22 0 2749 84 2 138 chr1 151376378 151376892 -91287461 + MLT2A1 LTR ERVL 1 444 0 453 214 55 7 chr1 151377882 151378027 -91286326 + MER103 DNA DNA 13 164 -2 308 293 33 73 chr1 151378412 151378562 -91285791 - MIR SINE MIR -117 145 2 450 227 61 87 chr1 151378780 151379009 -91285344 + MLT1L LTR MaLR 159 381 -234 281 234 11 53 chr1 151379120 151379196 -91285157 + MER94 DNA DNA 2 75 -59 1908 121 44 7 chr1 151379196 151379494 -91284859 + AluSx SINE Alu 1 309 -3 281 234 11 53 chr1 151379494 151379511 -91284842 + MER94 DNA DNA 75 91 -43 232 200 18 36 chr1 151380461 151380516 -91283837 - L2 LINE L2 -2 3311 3258 324 0 0 0 chr1 151380636 151380672 -91283681 + (CA)n Simple_repeat Simple_repeat 2 37 0 1932 238 58 26 chr1 151382008 151382625 -91281728 + L1ME3A LINE L1 5511 6147 -23 301 299 104 56 chr1 151382709 151382940 -91281413 + MLT1H LTR MaLR 110 351 -198 188 296 56 0 chr1 151384191 151384245 -91280108 - MER5A DNA MER1_type -83 106 50 6444 165 56 11 chr1 151384270 151385462 -91278891 + L1MC3 LINE L1 6519 7764 -21 2209 91 28 0 chr1 151385462 151385749 -91278604 + AluSx SINE Alu 1 295 -17 197 339 0 0 chr1 151385888 151385950 -91278403 - L2 LINE L2 -219 3053 2992 865 223 23 0 chr1 151386632 151386807 -91277546 + MSTA LTR MaLR 250 428 0 835 157 71 7 chr1 151387594 151387734 -91276619 + MER46A DNA MER2_type 1 149 -87 594 41 0 0 chr1 151387734 151387807 -91276546 + (TTATA)n Simple_repeat Simple_repeat 3 75 0 296 197 0 30 chr1 151388191 151388257 -91276096 + MIR3 SINE MIR 121 184 -24 12288 24 7 0 chr1 151388306 151390445 -91273908 - L1PA5 LINE L1 0 6154 4010 7665 15 0 0 chr1 151390445 151391261 -91273092 + L1PA2 LINE L1 5334 6152 -3 222 206 0 0 chr1 151391268 151391336 -91273017 + A-rich Low_complexity Low_complexity 1 68 0 410 102 19 15 chr1 151391337 151391419 -91272934 + L1PA10 LINE L1 5753 5834 -334 271 91 136 0 chr1 151391422 151391466 -91272887 + L1P4 LINE L1 5689 5738 -428 395 222 148 19 chr1 151391481 151391589 -91272764 + L2 LINE L2 2830 2951 -363 690 210 13 32 chr1 151391654 151391811 -91272542 + MER104 DNA Tc2 23 176 -4 297 336 41 27 chr1 151391998 151392144 -91272209 + MIR3 SINE MIR 24 171 -37 375 374 21 11 chr1 151392144 151392331 -91272022 + MER5A DNA MER1_type 1 189 0 821 225 11 47 chr1 151392853 151393044 -91271309 + MER5A DNA MER1_type 3 186 -3 931 323 91 46 chr1 151393346 151394067 -91270286 + L2 LINE L2 2492 3263 -9 384 299 109 0 chr1 151394283 151394420 -91269933 - L2 LINE L2 0 3313 3162 557 307 22 17 chr1 151395809 151395988 -91268365 - MIR3 SINE MIR -9 199 20 283 340 24 26 chr1 151396498 151396630 -91267723 + MIR SINE MIR 7 135 -73 378 240 220 0 chr1 151396785 151396935 -91267418 + MIR SINE MIR 80 262 0 215 197 0 61 chr1 151397006 151397072 -91267281 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 2782 129 0 0 chr1 151397787 151398190 -91266163 + L1PB1 LINE L1 5746 6148 -3 340 193 105 34 chr1 151398284 151398444 -91265909 + L1MDa LINE L1 2452 2620 -3920 329 273 55 61 chr1 151398548 151398713 -91265640 + L1MDa LINE L1 2852 3015 -3525 766 239 44 10 chr1 151398763 151398868 -91265485 - MLT1J LTR MaLR -299 212 112 279 0 0 0 chr1 151398868 151398899 -91265454 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 766 239 44 10 chr1 151398899 151398998 -91265355 - MLT1J LTR MaLR -399 112 1 32 0 0 0 chr1 151399067 151399099 -91265254 + AT_rich Low_complexity Low_complexity 1 32 0 402 281 59 22 chr1 151399689 151399824 -91264529 + L2 LINE L2 3169 3308 -5 1078 196 68 13 chr1 151400571 151400806 -91263547 - MLT1C LTR MaLR 0 467 220 3207 151 37 2 chr1 151400911 151401453 -91262900 + L1MB1 LINE L1 5268 5828 -340 1380 50 0 0 chr1 151401454 151401614 -91262739 + L1PA7 LINE L1 5994 6153 -1 1712 206 15 0 chr1 151401637 151401976 -91262377 + L1MB1 LINE L1 5814 6157 -11 1363 218 35 38 chr1 151402062 151402429 -91261924 + L1ME1 LINE L1 5797 6162 -4 1944 78 7 15 chr1 151403077 151403347 -91261006 + THE1A LTR MaLR 1 268 -87 1939 123 2 34 chr1 151403448 151403631 -91260722 - L1P5 LINE L1 -606 5545 5358 2493 72 0 3 chr1 151403631 151403936 -91260417 - AluY SINE Alu -7 304 1 1939 123 2 34 chr1 151403936 151404160 -91260193 - L1P5 LINE L1 -793 5358 5146 2672 158 0 7 chr1 151404160 151404217 -91260136 + L1PB1 LINE L1 5722 5778 -373 373 49 12 49 chr1 151404217 151404298 -91260055 + (TA)n Simple_repeat Simple_repeat 1 78 0 2672 158 0 7 chr1 151404298 151404669 -91259684 + L1PB1 LINE L1 5778 6148 -3 907 162 23 17 chr1 151404994 151405167 -91259186 + MER104 DNA Tc2 4 177 -3 262 244 138 119 chr1 151405973 151406436 -91257917 + L2 LINE L2 2837 3308 -5 905 279 101 31 chr1 151406882 151407240 -91257113 - L2 LINE L2 -63 3250 2868 26 0 0 0 chr1 151407528 151407554 -91256799 + AT_rich Low_complexity Low_complexity 1 26 0 652 293 161 28 chr1 151407617 151407941 -91256412 + L2 LINE L2 2370 2736 -578 564 82 0 0 chr1 151407941 151408014 -91256339 + L1PA8A LINE L1 5708 5780 -386 2078 115 28 0 chr1 151408014 151408301 -91256052 + AluSx SINE Alu 1 295 -17 11716 21 0 0 chr1 151408302 151409644 -91254709 - L1PA2 LINE L1 -795 5351 4010 7636 15 1 0 chr1 151409644 151410460 -91253893 + L1PA2 LINE L1 5334 6153 -2 222 206 0 0 chr1 151410467 151410535 -91253818 + A-rich Low_complexity Low_complexity 1 68 0 410 102 19 15 chr1 151410536 151410618 -91253735 + L1PA8A LINE L1 5753 5834 -297 271 91 136 0 chr1 151410621 151410665 -91253688 + L1P4 LINE L1 5689 5738 -428 395 222 148 19 chr1 151410680 151410788 -91253565 + L2 LINE L2 2829 2950 -363 690 210 13 32 chr1 151410853 151411010 -91253343 + MER104 DNA Tc2 23 176 -4 310 333 34 27 chr1 151411197 151411344 -91253009 + MIR3 SINE MIR 24 171 -37 375 374 21 11 chr1 151411344 151411531 -91252822 + MER5A DNA MER1_type 1 189 0 821 225 11 47 chr1 151412053 151412244 -91252109 + MER5A DNA MER1_type 3 186 -3 931 324 90 46 chr1 151412545 151413267 -91251086 + L2 LINE L2 2492 3263 -9 384 299 109 0 chr1 151413483 151413620 -91250733 - L2 LINE L2 0 3313 3162 557 307 22 17 chr1 151415009 151415188 -91249165 - MIR3 SINE MIR -9 199 20 283 340 24 26 chr1 151415698 151415830 -91248523 + MIR SINE MIR 7 135 -73 378 240 220 0 chr1 151415985 151416135 -91248218 + MIR SINE MIR 80 262 0 215 197 0 61 chr1 151416206 151416272 -91248081 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 21 57 0 0 chr1 151417543 151417578 -91246775 + AT_rich Low_complexity Low_complexity 1 35 0 2134 94 7 0 chr1 151417578 151417854 -91246499 + AluSp SINE Alu 1 278 -35 259 0 98 0 chr1 151417860 151417901 -91246452 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 292 224 17 0 chr1 151417950 151418008 -91246345 - L2 LINE L2 -6 3266 3208 611 143 0 27 chr1 151418286 151418587 -91245766 + (TA)n Simple_repeat Simple_repeat 1 292 0 1057 128 16 64 chr1 151468671 151468859 -91195494 - MLT2B3 LTR ERVL -334 220 42 1911 197 73 11 chr1 151468859 151469230 -91195123 - MLT1E LTR MaLR 0 593 200 434 342 0 0 chr1 151469267 151469381 -91194972 - MLT1E LTR MaLR -479 114 1 2355 49 0 23 chr1 151470935 151471240 -91193113 - AluY SINE Alu -13 298 1 423 0 0 0 chr1 151471266 151471313 -91193040 + (CA)n Simple_repeat Simple_repeat 1 47 0 258 342 42 17 chr1 151471403 151471523 -91192830 - L2 LINE L2 0 3272 3150 2186 121 0 3 chr1 151472029 151472335 -91192018 - AluSx SINE Alu -7 305 1 269 252 76 53 chr1 151472376 151472507 -91191846 - MIR SINE MIR -6 256 123 320 286 135 23 chr1 151473709 151473842 -91190511 + MIR3 SINE MIR 25 172 -36 21 71 0 0 chr1 151474781 151474823 -91189530 + AT_rich Low_complexity Low_complexity 1 42 0 1004 153 45 28 chr1 151475265 151475442 -91188911 + MER5A DNA MER1_type 1 180 -9 200 396 88 0 chr1 151475537 151475628 -91188725 + MIR SINE MIR 34 132 -76 772 237 151 64 chr1 151476347 151476785 -91187568 + MLT1H1 LTR MaLR 80 555 0 292 347 10 10 chr1 151477620 151477718 -91186635 + MIR SINE MIR 44 141 -67 574 287 147 0 chr1 151477733 151477890 -91186463 - MER5A DNA MER1_type -1 188 9 2036 123 0 35 chr1 151483149 151483465 -91180888 + AluSx SINE Alu 1 305 -7 414 260 227 0 chr1 151483987 151484141 -91180212 + MER5A DNA MER1_type 1 189 0 363 325 30 122 chr1 151485264 151485593 -91178760 - L2 LINE L2 -28 3244 2946 201 39 0 0 chr1 151486632 151486658 -91177695 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1822 92 0 40 chr1 151486677 151486950 -91177403 + L1PA13 LINE L1 5795 6056 -107 2496 74 15 3 chr1 151486713 151487051 -91177302 + L1PA13 LINE L1 5820 6161 -2 342 197 0 0 chr1 151487085 151487151 -91177202 + MER5B DNA MER1_type 1 66 -112 871 239 15 5 chr1 151487171 151487376 -91176977 + L1ME3A LINE L1 5546 5752 -418 1473 204 59 6 chr1 151487379 151487736 -91176617 + L1ME3A LINE L1 5795 6170 0 * 5957 188 30 20 chr1 151487725 151488876 -91175477 + L1MC3 LINE L1 4747 4787 -1359 2090 18 0 0 chr1 151488876 151489105 -91175248 + AluYb8 SINE Alu 84 312 -6 5957 188 30 20 chr1 151489105 151489715 -91174638 + L1MC3 LINE L1 4787 5389 -757 296 95 0 0 chr1 151489715 151489757 -91174596 + L1MD3 LINE L1 6925 6966 -1029 371 185 45 42 chr1 151489784 151490555 -91173798 + L1MC2 LINE L1 6139 7728 -1 741 189 8 0 chr1 151490568 151490700 -91173653 + MER5B DNA MER1_type 46 178 0 302 310 130 0 chr1 151490961 151491061 -91173292 + L2 LINE L2 3151 3263 -9 180 254 73 0 chr1 151491505 151491560 -91172793 + L2 LINE L2 3255 3313 0 363 228 18 79 chr1 151491773 151491887 -91172466 - MIR SINE MIR -55 153 47 781 263 49 22 chr1 151491937 151492161 -91172192 - MIR SINE MIR -25 237 8 414 261 39 8 chr1 151492166 151492296 -91172057 - MER94 DNA DNA 0 134 1 205 283 43 148 chr1 151492621 151492993 -91171360 - L3 LINE CR1 -617 960 635 1069 244 172 24 chr1 151492993 151493447 -91170906 + LTR33 LTR ERVL 1 521 0 205 283 43 148 chr1 151493447 151493494 -91170859 - L3 LINE CR1 -942 635 585 578 315 98 11 chr1 151493659 151494064 -91170289 + L2 LINE L2 2636 3074 -239 265 233 144 67 chr1 151494332 151494422 -91169931 - L2 LINE L2 -43 3229 3133 5472 139 40 16 chr1 151494613 151495990 -91168363 - L1MA8 LINE L1 -2 6289 4880 435 273 129 60 chr1 151496119 151496273 -91168080 - MLT1H LTR MaLR -185 364 222 2006 155 98 41 chr1 151496273 151496672 -91167681 + MLT2C2 LTR ERVL 1 429 -35 390 42 0 0 chr1 151496672 151496720 -91167633 + (CA)n Simple_repeat Simple_repeat 1 48 0 2006 155 98 41 chr1 151496720 151496759 -91167594 + MLT2C2 LTR ERVL 429 464 0 435 273 129 60 chr1 151496759 151496938 -91167415 - MLT1H LTR MaLR -327 222 8 483 343 78 30 chr1 151496940 151497518 -91166835 - L2 LINE L2 -218 3054 2368 865 304 73 36 chr1 151498673 151499114 -91165239 + LTR16B LTR ERVL 1 457 -7 2736 23 0 0 chr1 151499390 151499699 -91164654 + AluY SINE Alu 1 309 -2 250 340 27 20 chr1 151499724 151499871 -91164482 - L2 LINE L2 -231 3041 2894 220 350 0 21 chr1 151500149 151500246 -91164107 - L2 LINE L2 -592 2722 2628 1964 144 0 13 chr1 151500249 151500534 -91163819 + AluSx SINE Alu 1 283 -29 276 53 0 0 chr1 151500534 151500572 -91163781 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1964 144 0 13 chr1 151500572 151500584 -91163769 + AluSx SINE Alu 283 294 -18 216 0 0 0 chr1 151500956 151500980 -91163373 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 1662 34 34 0 chr1 151500980 151501187 -91163166 - L1PA7 LINE L1 -10 6144 5931 3303 159 39 47 chr1 151501248 151501517 -91162836 + L1MC2 LINE L1 5580 5850 -494 2139 111 0 0 chr1 151501517 151501796 -91162557 + AluSx SINE Alu 1 279 -33 183 42 0 0 chr1 151501796 151501820 -91162533 + (CA)n Simple_repeat Simple_repeat 1 24 0 3303 159 39 47 chr1 151501820 151502316 -91162037 + L1MC2 LINE L1 5848 6340 -4 440 90 15 0 chr1 151502837 151502904 -91161449 + MER41B LTR ERV1 482 549 -86 808 147 0 22 chr1 151502922 151503058 -91161295 + FLAM_C SINE Alu 1 133 0 1921 147 67 19 chr1 151503186 151503560 -91160793 - L1MA8 LINE L1 -22 7229 6838 5928 148 30 16 chr1 151503578 151503924 -91160429 - L1PB1 LINE L1 -7 6860 6521 300 53 0 0 chr1 151503924 151503962 -91160391 + (TG)n Simple_repeat Simple_repeat 2 39 0 279 0 0 0 chr1 151503961 151503992 -91160361 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 5928 148 30 16 chr1 151503962 151504820 -91159533 - L1PB1 LINE L1 -346 6521 5643 2394 74 3 0 chr1 151504820 151505119 -91159234 - AluY SINE Alu -11 300 1 5928 148 30 16 chr1 151505119 151505807 -91158546 - L1PB1 LINE L1 -1224 5643 4966 5665 160 65 17 chr1 151505808 151507306 -91157047 - L1PB1 LINE L1 -5143 1720 1 11852 173 36 25 chr1 151507321 151507415 -91156938 - L1MA8 LINE L1 -403 6848 6757 189 0 0 0 chr1 151507415 151507436 -91156917 + (TG)n Simple_repeat Simple_repeat 2 22 0 11852 173 36 25 chr1 151507436 151510445 -91153908 - L1MA8 LINE L1 -494 6757 3718 242 271 165 12 chr1 151510481 151510566 -91153787 + MIR SINE MIR 154 251 -11 558 165 0 39 chr1 151510644 151510747 -91153606 - FLAM_A SINE Alu -13 129 31 3064 82 22 22 chr1 151511506 151511967 -91152386 + L1PA13 LINE L1 5703 6163 0 194 323 0 15 chr1 151512036 151512101 -91152252 - MIR SINE MIR -81 127 64 189 171 0 0 chr1 151512309 151512344 -91152009 + (CA)n Simple_repeat Simple_repeat 2 36 0 4739 246 96 47 chr1 151512752 151513600 -91150753 - L1MA8 LINE L1 -3382 3724 2919 2261 125 35 3 chr1 151513600 151513977 -91150376 + L1MA2 LINE L1 5912 6300 -4 4739 246 96 47 chr1 151513977 151516923 -91147430 - L1MA8 LINE L1 -4187 2919 1 2186 146 39 8 chr1 151517288 151517652 -91146701 + THE1C LTR MaLR 1 375 0 384 234 90 0 chr1 151518681 151518792 -91145561 + MIR SINE MIR 87 207 -55 278 206 15 15 chr1 151518986 151519054 -91145299 + MER4-int LTR ERV1 1095 1162 -5436 227 284 0 32 chr1 151519239 151519357 -91144996 + GA-rich Low_complexity Low_complexity 1 114 0 735 271 53 12 chr1 151519358 151519605 -91144748 + MIR SINE MIR 5 261 -1 296 291 79 44 chr1 151519635 151519862 -91144491 + MIR SINE MIR 2 236 -26 504 307 14 0 chr1 151520722 151520862 -91143491 + MIR3 SINE MIR 61 202 -6 200 292 33 50 chr1 151521492 151521612 -91142741 + L2 LINE L2 2557 2674 -640 279 352 125 45 chr1 151521899 151522234 -91142119 + L2 LINE L2 2943 3304 -9 244 345 92 0 chr1 151523362 151523481 -91140872 + MIR SINE MIR 59 188 -74 341 266 158 19 chr1 151523815 151523973 -91140380 - L1ME4a LINE L1 -3 6118 5939 515 237 7 66 chr1 151524623 151524669 -91139684 - L1ME4a LINE L1 -467 5654 5607 2218 86 0 51 chr1 151524669 151524983 -91139370 - AluSq SINE Alu -15 298 1 515 237 7 66 chr1 151524983 151525088 -91139265 - L1ME4a LINE L1 -514 5607 5512 295 297 40 57 chr1 151525520 151525695 -91138658 + L2 LINE L2 2872 3043 -229 521 252 71 51 chr1 151525799 151526013 -91138340 - MER112 DNA MER1_type -1 259 38 1273 120 5 18 chr1 151526013 151526230 -91138123 - L1MA6 LINE L1 0 6300 6087 521 252 71 51 chr1 151526230 151526269 -91138084 - MER112 DNA MER1_type -222 38 1 302 264 157 3 chr1 151526688 151526865 -91137488 + MIR SINE MIR 18 260 -2 713 247 77 97 chr1 151526884 151527402 -91136951 + MLT1J LTR MaLR 1 508 -3 23 0 0 0 chr1 151528491 151528514 -91135839 + AT_rich Low_complexity Low_complexity 1 23 0 260 284 12 0 chr1 151528682 151528763 -91135590 - L1MC4a LINE L1 -1892 5916 5835 1791 219 14 11 chr1 151528799 151529165 -91135188 - MSTD LTR MaLR -29 367 1 301 253 13 0 chr1 151529165 151529240 -91135113 - L1MC4a LINE L1 -360 5802 5727 235 263 166 44 chr1 151529377 151529582 -91134771 + L1MC/D LINE L1 5381 5610 -2198 655 236 9 9 chr1 151529597 151530023 -91134330 + (TATG)n Simple_repeat Simple_repeat 1 425 0 244 182 0 0 chr1 151530023 151530067 -91134286 - L1MC4 LINE L1 -1339 6703 6660 327 328 77 16 chr1 151530067 151530250 -91134103 + MIR SINE MIR 68 261 -1 399 301 20 46 chr1 151530349 151530545 -91133808 + MIR SINE MIR 24 214 -48 212 254 0 0 chr1 151530748 151530811 -91133542 + A-rich Low_complexity Low_complexity 1 63 0 190 259 0 52 chr1 151531171 151531229 -91133124 - L2 LINE L2 -233 3039 2985 196 254 28 42 chr1 151532069 151532140 -91132213 - MIR3 SINE MIR -42 166 97 1494 310 114 20 chr1 151532144 151532696 -91131657 + MER115 DNA AcHobo 2 605 -88 2128 192 31 21 chr1 151532696 151533325 -91131028 - Charlie1a DNA MER1_type -5 1450 751 5381 174 22 30 chr1 151533325 151535333 -91129020 - L1MA10 LINE L1 -2 6332 4340 2312 193 42 61 chr1 151535396 151536034 -91128319 - Charlie1a DNA MER1_type -722 733 108 327 218 0 64 chr1 151536071 151536149 -91128204 + Zaphod DNA AcHobo 3959 4031 0 246 128 0 0 chr1 151536864 151536903 -91127450 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 2068 150 7 0 chr1 151536903 151537209 -91127144 - AluSx SINE Alu -4 308 1 243 314 46 78 chr1 151538221 151538381 -91125972 - MIR3 SINE MIR -62 146 3 1834 231 42 7 chr1 151538919 151539370 -91124983 + MLT1C LTR MaLR 1 467 0 208 362 64 30 chr1 151539532 151539797 -91124556 + L2 LINE L2 2818 3091 -181 980 156 39 0 chr1 151540048 151540228 -91124125 - MER20 DNA MER1_type -6 213 27 417 261 241 14 chr1 151540359 151540566 -91123787 + MIR SINE MIR 2 255 -7 21 36 0 0 chr1 151540832 151540860 -91123493 + AT_rich Low_complexity Low_complexity 1 28 0 226 226 0 16 chr1 151541053 151541115 -91123238 + (CA)n Simple_repeat Simple_repeat 2 62 0 300 318 106 45 chr1 151541515 151541647 -91122706 + MIR3 SINE MIR 2 141 -67 204 256 0 0 chr1 151542186 151542225 -91122128 + L2 LINE L2 3222 3260 -12 373 249 6 6 chr1 151543794 151543967 -91120386 + (TA)n Simple_repeat Simple_repeat 2 174 0 2028 145 13 7 chr1 151544156 151544466 -91119887 - AluSx SINE Alu 0 312 1 534 327 27 18 chr1 151544641 151544864 -91119489 + L2 LINE L2 2369 2593 -721 617 213 126 33 chr1 151544869 151544969 -91119384 - MER58C DNA MER1_type -2220 200 111 1433 224 22 35 chr1 151544969 151545339 -91119014 - MLT1A1 LTR MaLR 0 365 1 617 213 126 33 chr1 151545339 151545421 -91118932 - MER58C DNA MER1_type -2309 111 1 375 362 84 23 chr1 151545426 151545815 -91118538 + L2 LINE L2 2583 3027 -245 289 298 136 31 chr1 151545862 151545976 -91118377 - LTR16A1 LTR ERVL 0 457 356 1339 292 24 13 chr1 151545976 151546435 -91117918 - LTR16B LTR ERVL 0 464 1 289 298 136 31 chr1 151546435 151546578 -91117775 - LTR16A1 LTR ERVL -101 356 173 297 358 128 0 chr1 151546825 151546934 -91117419 + L2 LINE L2 3134 3256 -16 256 390 0 21 chr1 151547437 151547532 -91116821 + MIR SINE MIR 20 112 -150 2420 153 41 7 chr1 151547638 151548049 -91116304 - MSTB LTR MaLR 0 426 2 997 288 10 20 chr1 151548109 151548401 -91115952 + MLT1I LTR MaLR 121 409 0 827 206 0 0 chr1 151549071 151549231 -91115122 - MER58B DNA MER1_type -5 336 177 270 284 37 12 chr1 151549483 151549564 -91114789 - L2 LINE L2 -900 2414 2332 756 46 5 5 chr1 151550086 151550203 -91114150 - L1PA4 LINE L1 -235 5919 5803 * 2132 63 0 20 chr1 151550176 151550478 -91113875 + L1PA4 LINE L1 5860 6155 0 32 0 0 0 chr1 151550478 151550510 -91113843 + AT_rich Low_complexity Low_complexity 1 32 0 235 259 0 0 chr1 151550821 151550875 -91113478 + MIR SINE MIR 3 56 -206 273 196 0 0 chr1 151550981 151551037 -91113316 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 333 303 0 0 chr1 151551042 151551131 -91113222 - L1MC4 LINE L1 -1339 6703 6615 233 119 24 0 chr1 151551132 151551174 -91113179 + (TA)n Simple_repeat Simple_repeat 1 43 0 349 292 0 0 chr1 151551179 151551268 -91113085 - L1MC4 LINE L1 -1339 6703 6615 311 192 27 14 chr1 151551248 151551321 -91113032 - L1MCa LINE L1 -4358 2068 1995 * 226 244 26 0 chr1 151551331 151551409 -91112944 + L1MC4 LINE L1 6614 6693 -1349 219 69 0 0 chr1 151552142 151552171 -91112182 + (TTA)n Simple_repeat Simple_repeat 2 30 0 732 196 22 0 chr1 151552265 151552403 -91111950 + FRAM SINE Alu 11 151 -25 583 339 126 20 chr1 151553340 151553865 -91110488 + L2 LINE L2 2573 3162 -151 1806 124 8 113 chr1 151553865 151554253 -91110100 + MER7A DNA MER2_type 1 345 -1 2089 139 25 27 chr1 151555970 151556615 -91107738 - MER39 LTR ERV1 -1 706 1 651 296 61 20 chr1 151556682 151556929 -91107424 + MIR SINE MIR 6 262 0 1127 169 35 0 chr1 151557074 151557275 -91107078 - MER6B DNA MER2_type -1 209 2 25 0 0 0 chr1 151557275 151557300 -91107053 + AT_rich Low_complexity Low_complexity 1 25 0 442 289 117 26 chr1 151557318 151557584 -91106769 + L2 LINE L2 2614 2903 -411 1319 219 11 30 chr1 151557589 151558101 -91106252 - L1PB4 LINE L1 -4 6299 5808 778 332 86 22 chr1 151558124 151558485 -91105868 + L2 LINE L2 2930 3313 0 520 317 27 6 chr1 151559041 151559226 -91105127 + MIR3 SINE MIR 6 195 -13 213 200 0 0 chr1 151560244 151560284 -91104069 + CT-rich Low_complexity Low_complexity 2 41 0 318 265 120 8 chr1 151562611 151562728 -91101625 - MIR3 SINE MIR -43 165 36 1481 128 7 28 chr1 151565642 151565924 -91098429 - L1MA4 LINE L1 -5 6295 6020 314 296 26 0 chr1 151567002 151567117 -91097236 + (TA)n Simple_repeat Simple_repeat 2 119 0 216 0 0 0 chr1 151567117 151567141 -91097212 + (CA)n Simple_repeat Simple_repeat 2 25 0 20284 31 2 0 chr1 151569792 151573003 -91091350 + L1PA4 LINE L1 2940 6152 -3 404 115 62 115 chr1 151573042 151573155 -91091198 - MIR SINE MIR -68 194 88 321 26 0 0 chr1 151573660 151573698 -91090655 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 1974 116 3 11 chr1 151573867 151574152 -91090201 + AluSx SINE Alu 3 285 -27 225 0 0 0 chr1 151574152 151574177 -91090176 + (TG)n Simple_repeat Simple_repeat 2 26 0 225 200 0 0 chr1 151574181 151574236 -91090117 - L1MC4 LINE L1 -1339 6703 6649 503 316 31 36 chr1 151574248 151574473 -91089880 - MIR SINE MIR -25 237 14 393 282 17 28 chr1 151574492 151574673 -91089680 + A-rich Low_complexity Low_complexity 2 180 0 294 29 0 0 chr1 151575268 151575303 -91089050 + (CA)n Simple_repeat Simple_repeat 2 36 0 369 372 145 8 chr1 151575800 151576469 -91087884 + L2 LINE L2 2374 3123 -149 21 0 0 0 chr1 151576919 151576940 -91087413 + AT_rich Low_complexity Low_complexity 1 21 0 570 261 64 39 chr1 151577037 151577240 -91087113 - MIR SINE MIR -53 209 2 209 341 59 12 chr1 151578061 151578146 -91086207 - MIR SINE MIR -148 114 26 188 268 99 42 chr1 151578292 151578363 -91085990 + MER5A DNA MER1_type 46 120 -69 210 203 0 51 chr1 151578293 151578352 -91086001 - MER5B DNA MER1_type -36 142 87 250 257 14 27 chr1 151578675 151578749 -91085604 - MIR SINE MIR -65 197 125 198 0 0 0 chr1 151579272 151579294 -91085059 + (TTA)n Simple_repeat Simple_repeat 2 23 0 470 298 139 38 chr1 151579617 151580844 -91083509 - L1ME LINE L1 -610 5535 4188 4216 60 0 4 chr1 151580957 151581492 -91082861 - L1PA5 LINE L1 0 6154 5622 1367 40 0 0 chr1 151581494 151581670 -91082683 + L1P LINE L1 4854 5029 -1117 381 276 37 0 chr1 151581698 151581832 -91082521 - L1ME LINE L1 -2113 4016 3878 233 238 92 39 chr1 151581831 151582037 -91082316 - L1ME LINE L1 -3639 2490 2274 * 32 26 0 0 chr1 151582041 151582080 -91082273 + AT_rich Low_complexity Low_complexity 1 39 0 6714 128 34 48 chr1 151582404 151583653 -91080700 - Tigger3b DNA MER2_type 0 1231 1 319 313 14 73 chr1 151583787 151584134 -91080219 - L1MEc LINE L1 -4485 1669 1359 252 241 182 51 chr1 151584205 151584441 -91079912 - L1MEc LINE L1 -4906 1213 947 24 0 0 0 chr1 151584443 151584467 -91079886 + AT_rich Low_complexity Low_complexity 1 24 0 403 300 116 46 chr1 151584530 151585054 -91079299 + L1M4 LINE L1 4177 4737 -1409 4011 124 64 54 chr1 151585341 151586118 -91078235 + LTR1 LTR ERV1 1 785 0 282 217 0 0 chr1 151586530 151586599 -91077754 + GA-rich Low_complexity Low_complexity 4 72 0 22 0 0 0 chr1 151587795 151587817 -91076536 + AT_rich Low_complexity Low_complexity 1 22 0 1183 141 11 22 chr1 151588302 151588486 -91075867 - AluSx SINE Alu -130 182 1 300 166 7 112 chr1 151589176 151589280 -91075073 - MLT1H LTR MaLR 0 585 491 30809 69 16 13 chr1 151589902 151593901 -91070452 + HERVL-A1 LTR ERVL 1646 5654 0 2583 73 69 82 chr1 151593902 151594351 -91070002 + MLT2A1 LTR ERVL 2 444 0 215 356 30 10 chr1 151594353 151594454 -91069899 + MIR SINE MIR 117 219 -43 328 337 61 25 chr1 151594816 151595012 -91069341 + LTR67 LTR ERVL 353 555 -2 319 333 72 0 chr1 151595085 151595223 -91069130 + MIR SINE MIR 7 154 -108 2539 135 30 0 chr1 151595280 151595679 -91068674 - L1PA15 LINE L1 -7 6158 5748 720 259 186 52 chr1 151595712 151596133 -91068220 - L2 LINE L2 -76 3237 2758 533 179 0 0 chr1 151596144 151596228 -91068125 + AluJ/FLAM SINE Alu 1 84 -228 181 353 73 61 chr1 151596677 151597006 -91067347 + L2 LINE L2 2884 3216 -56 543 90 0 0 chr1 151597079 151597157 -91067196 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 405 292 58 17 chr1 151598719 151598895 -91065458 - MIR SINE MIR -18 244 59 2044 129 0 0 chr1 151599019 151599299 -91065054 + AluSq SINE Alu 1 280 -33 300 53 0 0 chr1 151599299 151599337 -91065016 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1777 143 20 0 chr1 151599534 151599877 -91064476 - L1PA16 LINE L1 -9 6157 5730 2675 83 3 0 chr1 151600543 151600894 -91063459 - THE1A LTR MaLR -1 354 3 11020 102 25 0 chr1 151600896 151602438 -91061915 - THE1A-int LTR MaLR 0 1580 1 2245 104 60 0 chr1 151602438 151602773 -91061580 - THE1A LTR MaLR 0 355 1 285 125 0 0 chr1 151602891 151602947 -91061406 + (T)n Simple_repeat Simple_repeat 1 56 0 374 372 112 43 chr1 151603280 151603764 -91060589 + L3 LINE CR1 27 543 -1034 213 200 0 0 chr1 151603768 151603814 -91060539 + (TG)n Simple_repeat Simple_repeat 1 46 0 1453 288 88 59 chr1 151603821 151603982 -91060371 - L2 LINE L2 -185 3128 2973 1919 140 0 11 chr1 151603982 151604310 -91060043 - AluSx SINE Alu 0 330 6 1453 288 88 59 chr1 151604310 151604949 -91059404 - L2 LINE L2 -340 2973 2322 368 330 108 5 chr1 151604998 151605183 -91059170 + L1M4 LINE L1 4903 5106 -1040 250 331 39 28 chr1 151605496 151605674 -91058679 - L1ME LINE L1 -5866 204 25 873 302 112 24 chr1 151605692 151606399 -91057954 + L1MB2 LINE L1 2552 3380 -2766 180 0 0 0 chr1 151606399 151606419 -91057934 + (TG)n Simple_repeat Simple_repeat 1 20 0 873 302 112 24 chr1 151606419 151606748 -91057605 + L1MB2 LINE L1 3380 3679 -2467 24 0 0 0 chr1 151606772 151606796 -91057557 + AT_rich Low_complexity Low_complexity 1 24 0 2575 82 3 3 chr1 151606968 151607323 -91057030 + L1PA10 LINE L1 5810 6164 -4 428 318 44 35 chr1 151607370 151607685 -91056668 + L1MB2 LINE L1 3939 4256 -1890 1500 232 87 18 chr1 151607769 151608204 -91056149 - MLT1C LTR MaLR -2 465 1 342 253 42 84 chr1 151608270 151608436 -91055917 + L1MB2 LINE L1 4501 4659 -1487 1696 270 79 21 chr1 151608520 151609209 -91055144 - HsTC2c DNA Tc2 -3 726 1 574 288 132 45 chr1 151609209 151609624 -91054729 + L1MB2 LINE L1 4744 5201 -945 1506 199 36 0 chr1 151609624 151609901 -91054452 + AluJb SINE Alu 3 289 -23 574 288 132 45 chr1 151609901 151609926 -91054427 + L1MB2 LINE L1 5201 5222 -924 218 54 0 54 chr1 151609967 151610004 -91054349 + (TATG)n Simple_repeat Simple_repeat 2 36 0 242 182 0 21 chr1 151610004 151610078 -91054275 - L1MC4 LINE L1 -1340 6982 2003 324 87 0 0 chr1 151610112 151610158 -91054195 - MADE1 DNA Mariner -34 46 1 3400 178 20 25 chr1 151610209 151610958 -91053395 + L1MB2 LINE L1 5333 6128 -43 2908 144 18 45 chr1 151610957 151611514 -91052839 + L1MA7 LINE L1 5709 6250 -41 * 226 237 21 32 chr1 151611439 151611517 -91052836 + L1PB4 LINE L1 6059 6137 -19 * 5081 116 45 27 chr1 151611517 151613260 -91051093 + L1PA16 LINE L1 4397 6150 -16 226 237 21 32 chr1 151613260 151613274 -91051079 + L1PB4 LINE L1 6137 6150 -6 25 65 0 0 chr1 151613280 151613326 -91051027 + AT_rich Low_complexity Low_complexity 1 46 0 2163 84 3 21 chr1 151613536 151613844 -91050509 - AluSg SINE Alu 0 303 1 298 221 49 85 chr1 151614028 151614249 -91050104 + L1M1 LINE L1 5290 5457 -846 841 269 65 59 chr1 151614562 151615023 -91049330 + L1ME3 LINE L1 5488 5951 -211 1499 257 67 46 chr1 151615293 151615965 -91048388 + L1MC4a LINE L1 5256 5941 -1867 1010 302 173 16 chr1 151616216 151616789 -91047564 - L2 LINE L2 -1061 2253 1591 259 321 126 83 chr1 151616830 151617204 -91047149 + L3 LINE CR1 974 1363 -214 580 195 27 0 chr1 151617319 151617468 -91046885 - L1M4 LINE L1 -806 5340 5188 211 179 36 0 chr1 151617575 151617631 -91046722 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 309 297 100 23 chr1 151617802 151618321 -91046032 - L1 LINE L1 -2955 3191 2630 2590 234 58 24 chr1 151618337 151619095 -91045258 + L1ME1 LINE L1 5365 6148 -18 23 0 0 0 chr1 151619113 151619136 -91045217 + AT_rich Low_complexity Low_complexity 1 23 0 667 342 39 29 chr1 151619162 151619577 -91044776 + L1MEc LINE L1 57 475 -5921 216 0 0 0 chr1 151620064 151620088 -91044265 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 258 258 125 17 chr1 151620106 151620226 -91044127 + L1MEc LINE L1 1599 1731 -4665 258 283 37 21 chr1 151620283 151620474 -91043879 + L1MEc LINE L1 3199 3392 -2823 335 282 0 28 chr1 151620590 151620706 -91043647 + L1MEc LINE L1 3580 3686 -2529 1736 298 39 5 chr1 151620711 151621287 -91043066 + L1M3a LINE L1 11 746 -5209 1527 223 11 8 chr1 151621285 151621649 -91042704 + L1 LINE L1 4866 5230 -916 * 319 353 39 77 chr1 151621962 151622169 -91042184 + L2 LINE L2 3071 3269 -3 211 325 34 77 chr1 151622966 151623033 -91041320 + MIR SINE MIR 61 129 -133 2378 168 21 14 chr1 151623033 151623456 -91040897 + MSTB LTR MaLR 1 426 0 8378 188 37 5 chr1 151623456 151625054 -91039299 + MSTB-int LTR MaLR 1 1649 -2 2512 161 19 9 chr1 151625056 151625478 -91038875 + MSTB LTR MaLR 1 426 0 211 325 34 77 chr1 151625478 151625523 -91038830 + MIR SINE MIR 129 172 -90 243 61 0 0 chr1 151626167 151626200 -91038153 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1723 176 7 0 chr1 151626206 151626479 -91037874 - AluJo SINE Alu -36 276 2 286 127 16 16 chr1 151626500 151626563 -91037790 + (TA)n Simple_repeat Simple_repeat 2 64 0 308 37 3 0 chr1 151626573 151626618 -91037735 + L1P3 LINE L1 5403 5448 -706 442 274 34 33 chr1 151626763 151626957 -91037396 + MIR SINE MIR 15 145 -63 288 258 25 58 chr1 151627369 151627489 -91036864 - MIR SINE MIR -66 196 81 6683 80 5 3 chr1 151627628 151629064 -91035289 - L1PA10 LINE L1 0 6168 4730 370 315 51 41 chr1 151630098 151630295 -91034058 - L2 LINE L2 -208 3064 2866 2025 134 3 0 chr1 151630547 151630830 -91033523 + AluSx SINE Alu 1 284 -28 218 317 0 0 chr1 151630962 151631022 -91033331 - L2 LINE L2 -556 2758 2699 387 267 33 0 chr1 151631818 151631908 -91032445 + MIR3 SINE MIR 69 161 -47 2012 112 11 3 chr1 151632171 151632480 -91031873 - AluSg SINE Alu 0 310 1 283 286 36 12 chr1 151633416 151633500 -91030853 + MIR SINE MIR 33 118 -90 189 159 0 0 chr1 151633714 151633758 -91030595 + CT-rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr1 151634311 151634339 -91030014 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr1 151635999 151636027 -91028326 + AT_rich Low_complexity Low_complexity 1 28 0 243 180 0 0 chr1 151636969 151637019 -91027334 + (TA)n Simple_repeat Simple_repeat 1 50 0 439 307 65 60 chr1 151639696 151639911 -91024442 - MIR SINE MIR -8 254 39 2094 114 6 19 chr1 151639928 151640244 -91024109 - AluSx SINE Alu 0 312 1 745 269 103 13 chr1 151640434 151640668 -91023685 - MIR SINE MIR 0 262 8 410 313 84 18 chr1 151641170 151641336 -91023017 - MIR3 SINE MIR -15 193 17 241 217 0 58 chr1 151641947 151642016 -91022337 - MIR SINE MIR -124 138 74 22 0 0 0 chr1 151642289 151642311 -91022042 + AT_rich Low_complexity Low_complexity 1 22 0 254 236 0 56 chr1 151643337 151643426 -91020927 + A-rich Low_complexity Low_complexity 3 86 0 1935 125 82 20 chr1 151643477 151643830 -91020523 + THE1C LTR MaLR 1 375 0 2034 144 25 14 chr1 151643832 151644187 -91020166 - MER46B DNA MER2_type -2 234 1 359 305 39 8 chr1 151644189 151644317 -91020036 - MIR SINE MIR -49 213 82 372 307 91 98 chr1 151645229 151645493 -91018860 - L2 LINE L2 -32 3240 2979 230 155 28 42 chr1 151645641 151645712 -91018641 + (TA)n Simple_repeat Simple_repeat 1 70 0 206 146 62 0 chr1 151645814 151645862 -91018491 + (TA)n Simple_repeat Simple_repeat 2 52 0 246 141 28 42 chr1 151646854 151646925 -91017428 + (TA)n Simple_repeat Simple_repeat 1 70 0 197 116 0 47 chr1 151646969 151647012 -91017341 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 523 236 46 52 chr1 151648209 151648383 -91015970 + MIR SINE MIR 90 262 0 21 36 0 0 chr1 151648395 151648423 -91015930 + AT_rich Low_complexity Low_complexity 1 28 0 612 288 50 0 chr1 151648781 151648941 -91015412 + MIR SINE MIR 92 259 -3 24 0 0 0 chr1 151648943 151648967 -91015386 + AT_rich Low_complexity Low_complexity 1 24 0 882 168 254 49 chr1 151649756 151650000 -91014353 - AluJo SINE Alu -8 294 1 229 306 0 30 chr1 151650296 151650430 -91013923 + GA-rich Low_complexity Low_complexity 2 131 0 7170 101 8 26 chr1 151650448 151651524 -91012829 - MER11C LTR ERVK -14 1057 1 196 114 68 0 chr1 151651805 151651849 -91012504 + (CATA)n Simple_repeat Simple_repeat 2 48 0 200 182 0 36 chr1 151651893 151651948 -91012405 + (CATA)n Simple_repeat Simple_repeat 2 54 0 283 303 79 0 chr1 151652777 151652866 -91011487 + L3 LINE CR1 436 531 -1046 209 284 80 11 chr1 151653387 151653475 -91010878 + L3 LINE CR1 631 724 -853 225 309 113 0 chr1 151653596 151653693 -91010660 - MIR SINE MIR -96 166 59 215 143 89 0 chr1 151656820 151656876 -91007477 + (GTTTG)n Simple_repeat Simple_repeat 2 62 0 2473 60 7 3 chr1 151657646 151657948 -91006405 + AluSp SINE Alu 1 303 -10 328 308 141 16 chr1 151710637 151710822 -90953531 - MIR SINE MIR -6 256 49 443 269 7 55 chr1 151710847 151710992 -90953361 - MER5A DNA MER1_type 0 189 52 1343 134 40 5 chr1 151711632 151711855 -90952498 - Tigger1 DNA MER2_type 0 2418 2188 2401 77 0 34 chr1 151711955 151712186 -90952167 + L1PA8 LINE L1 5836 6053 -119 2451 57 10 0 chr1 151712186 151712486 -90951867 + AluY SINE Alu 1 303 -8 2401 77 0 34 chr1 151712486 151712603 -90951750 + L1PA8 LINE L1 6053 6172 0 245 75 25 0 chr1 151712619 151712659 -90951694 + (CA)n Simple_repeat Simple_repeat 2 42 0 229 351 218 0 chr1 151712691 151712893 -90951460 + MIR SINE MIR 1 246 -16 3391 204 20 9 chr1 151713937 151714584 -90949769 + MER21-int LTR ERV1 2642 3295 -896 267 270 0 16 chr1 151714610 151714673 -90949680 + MER21B LTR ERV1 24 85 -778 2752 224 122 40 chr1 151714700 151715453 -90948900 + MER21B LTR ERV1 19 833 -30 270 311 79 51 chr1 151717450 151717627 -90946726 - MIR3 SINE MIR -7 201 20 341 241 121 20 chr1 151717677 151717876 -90946477 + L1MC5 LINE L1 7461 7679 -282 4382 101 29 8 chr1 151717938 151718603 -90945750 + L1PB2 LINE L1 5470 6148 -3 36 91 0 0 chr1 151718608 151718707 -90945646 + AT_rich Low_complexity Low_complexity 1 99 0 269 242 15 0 chr1 151718912 151718978 -90945375 - MIR SINE MIR -131 131 65 51 42 0 0 chr1 151721157 151721229 -90943124 + AT_rich Low_complexity Low_complexity 1 72 0 879 176 13 7 chr1 151721665 151721818 -90942535 - FRAM SINE Alu -22 154 1 286 167 0 0 chr1 151721872 151721920 -90942433 - FLAM_A SINE Alu -12 121 74 24 32 0 0 chr1 151722500 151722531 -90941822 + AT_rich Low_complexity Low_complexity 1 31 0 818 203 7 0 chr1 151722533 151722681 -90941672 - FRAM SINE Alu -24 152 4 376 368 74 6 chr1 151722782 151722945 -90941408 - MIR3 SINE MIR -20 188 15 28 29 0 0 chr1 151723079 151723114 -90941239 + AT_rich Low_complexity Low_complexity 1 35 0 339 253 11 11 chr1 151724221 151724316 -90940037 - MER112 DNA MER1_type -162 98 4 1141 242 8 24 chr1 151724960 151725212 -90939141 - MIR SINE MIR 0 262 15 329 319 43 0 chr1 151725969 151726063 -90938290 - MIR3 SINE MIR -7 201 104 322 234 64 21 chr1 151726056 151726150 -90938203 - L2 LINE L2 -8 3305 3208 * 727 226 68 27 chr1 151726790 151727011 -90937342 - MER112 DNA MER1_type -25 235 6 372 22 0 0 chr1 151727024 151727069 -90937284 + (CA)n Simple_repeat Simple_repeat 1 45 0 1393 191 0 27 chr1 151727070 151727327 -90937026 - AluJo SINE Alu -25 287 38 229 349 55 0 chr1 151727669 151727778 -90936575 + L3 LINE CR1 722 836 -741 1039 184 20 56 chr1 151727815 151728065 -90936288 + L1MB1 LINE L1 5928 6168 0 775 141 33 0 chr1 151728930 151729051 -90935302 + MLT1A1 LTR MaLR 241 365 0 1735 182 30 38 chr1 151729218 151729586 -90934767 + MLT1A1 LTR MaLR 1 365 0 374 311 39 22 chr1 151729702 151729882 -90934471 - MIR SINE MIR 0 262 80 312 303 48 35 chr1 151729920 151730065 -90934288 - L1ME LINE L1 -334 5828 5682 264 286 145 38 chr1 151730146 151730408 -90933945 - L1ME LINE L1 -612 5558 5269 640 230 37 31 chr1 151730809 151730868 -90933485 + AluJo SINE Alu 85 142 -170 1839 49 5 0 chr1 151730868 151731092 -90933261 + AluY SINE Alu 87 311 0 640 230 37 31 chr1 151731092 151731223 -90933130 + AluJo SINE Alu 142 276 -36 2360 129 10 0 chr1 151731323 151731790 -90932563 - L1P4 LINE L1 -730 5431 4961 1711 149 54 40 chr1 151731790 151732160 -90932193 - THE1C LTR MaLR 0 375 1 9915 127 4 43 chr1 151732160 151733803 -90930550 - THE1C-int LTR MaLR 0 1580 1 262 32 0 0 chr1 151733803 151733834 -90930519 - THE1C LTR MaLR 0 364 334 446 197 31 94 chr1 151733859 151733986 -90930367 + MER34C-int LTR ERV1 4616 4734 -202 195 322 0 0 chr1 151734112 151734171 -90930182 - MIR SINE MIR -202 60 2 1008 208 48 6 chr1 151734553 151734802 -90929551 + MER34C-int LTR ERV1 4020 4248 -688 284 179 217 38 chr1 151734809 151734915 -90929438 + LTR37A LTR ERV1 4 128 -298 1050 231 79 39 chr1 151734916 151735271 -90929082 + MER34C-int LTR ERV1 4366 4734 -202 2115 186 83 57 chr1 151735355 151735635 -90928718 + MER34C LTR ERV1 8 279 -306 2860 129 11 11 chr1 151735635 151736083 -90928270 - MER83 LTR ERV1 0 448 1 2115 186 83 57 chr1 151736083 151736365 -90927988 + MER34C LTR ERV1 279 585 0 667 244 137 49 chr1 151736879 151737384 -90926969 - LTR48 LTR ERV1 -2 593 157 350 278 118 1 chr1 151737351 151737461 -90926892 - MER34 LTR ERV1 -430 121 1 * 299 263 108 43 chr1 151738020 151738206 -90926147 + MIR SINE MIR 42 239 -23 1805 178 0 0 chr1 151739922 151740214 -90924139 - AluJb SINE Alu -20 292 1 24 91 0 0 chr1 151740616 151740682 -90923671 + AT_rich Low_complexity Low_complexity 1 66 0 252 320 115 33 chr1 151740857 151740979 -90923374 - MIR3 SINE MIR -67 141 10 210 385 24 6 chr1 151741200 151741369 -90922984 + L2 LINE L2 2809 2980 -292 557 188 12 71 chr1 151741661 151741831 -90922522 + MER53 DNA DNA 30 189 0 184 282 0 0 chr1 151741956 151741995 -90922358 - L3 LINE CR1 -23 1554 1516 1774 116 8 127 chr1 151742242 151742620 -90921733 + MER1B DNA MER1_type 1 333 -4 267 329 35 0 chr1 151743222 151743307 -90921046 + L2 LINE L2 3223 3310 -3 2613 145 35 13 chr1 151745136 151745591 -90918762 + MLT1C LTR MaLR 3 467 0 329 196 0 0 chr1 151746084 151746175 -90918178 + Alu SINE Alu 234 324 0 2668 141 11 9 chr1 151746381 151746814 -90917539 + L1PA15 LINE L1 5729 6162 -3 218 103 0 26 chr1 151747144 151747183 -90917170 + (TA)n Simple_repeat Simple_repeat 1 38 0 217 293 17 0 chr1 151747411 151747469 -90916884 + L2 LINE L2 3213 3271 -1 259 204 0 19 chr1 151748036 151748090 -90916263 - MIR SINE MIR -106 156 104 220 347 65 32 chr1 151748847 151748971 -90915382 + L2 LINE L2 2581 2708 -606 189 346 44 59 chr1 151749011 151749070 -90915283 + MIR SINE MIR 89 147 -115 2234 97 0 0 chr1 151749070 151749400 -90914953 + AluSx SINE Alu 1 330 0 189 346 44 59 chr1 151749400 151749473 -90914880 + MIR SINE MIR 147 222 -40 207 260 271 0 chr1 151750534 151750630 -90913723 - L2 LINE L2 -14 3299 3178 734 224 29 54 chr1 151751005 151751210 -90913143 + L2 LINE L2 2056 2255 -1059 2392 215 81 14 chr1 151751246 151751989 -90912364 - L1MD2 LINE L1 -368 5991 5156 411 290 30 10 chr1 151752388 151752488 -90911865 + MIR SINE MIR 45 146 -62 1753 165 0 3 chr1 151752881 151753172 -90911181 - AluSx SINE Alu -22 290 1 7792 31 4 0 chr1 151753181 151754920 -90909433 - L1PA3 LINE L1 0 6155 4444 8901 27 1 0 chr1 151754920 151755970 -90908383 + L1PA3 LINE L1 3386 4436 -1710 321 298 32 16 chr1 151756578 151756702 -90907651 - L2 LINE L2 -3 3310 3185 225 320 180 12 chr1 151757177 151757349 -90907004 - MIR3 SINE MIR -5 203 3 291 28 0 0 chr1 151758201 151758237 -90906116 + (TG)n Simple_repeat Simple_repeat 2 37 0 1539 171 13 37 chr1 151758241 151758539 -90905814 - AluJo SINE Alu -21 291 1 2239 79 0 43 chr1 151758722 151759027 -90905326 - AluY SINE Alu -19 292 1 971 176 5 24 chr1 151760030 151760240 -90904113 + L1PB3 LINE L1 5947 6152 -2 582 301 19 10 chr1 151760283 151760489 -90903864 + L2 LINE L2 3103 3310 -3 21 0 0 0 chr1 151761451 151761472 -90902881 + AT_rich Low_complexity Low_complexity 1 21 0 6125 7 0 0 chr1 151761728 151762413 -90901940 - L1HS LINE L1 0 6155 5471 624 280 55 25 chr1 151763792 151763992 -90900361 + MIR SINE MIR 1 206 -56 451 343 142 49 chr1 151764071 151765083 -90899270 + L2 LINE L2 616 1532 -1782 186 103 0 0 chr1 151765083 151765112 -90899241 + (TAA)n Simple_repeat Simple_repeat 2 30 0 451 343 142 49 chr1 151765112 151766012 -90898341 + L2 LINE L2 1532 2707 -607 190 315 62 138 chr1 151766096 151766452 -90897901 + L2 LINE L2 2941 3269 -3 268 260 0 0 chr1 151766557 151766607 -90897746 - MER91B DNA MER1_type -14 126 77 1410 190 52 78 chr1 151766609 151766993 -90897360 + MLT1A2 LTR MaLR 1 374 0 255 262 16 0 chr1 151767143 151767204 -90897149 - MER91B DNA MER1_type -127 63 2 274 317 37 0 chr1 151767899 151767981 -90896372 - MIR3 SINE MIR -36 172 88 963 219 43 0 chr1 151767985 151768195 -90896158 + MER74B LTR ERVL 60 278 -344 521 169 24 0 chr1 151768652 151768735 -90895618 - AluJb SINE Alu -19 293 209 1655 187 6 25 chr1 151768876 151769191 -90895162 + AluJo SINE Alu 1 309 -3 815 232 116 26 chr1 151769584 151769886 -90894467 - L1MB7 LINE L1 0 6184 5856 1427 213 68 28 chr1 151769895 151770248 -90894105 + MLT1A2 LTR MaLR 1 367 -7 1903 177 19 3 chr1 151770248 151770610 -90893743 - L1ME1 LINE L1 -317 6660 6293 202 70 0 47 chr1 151770627 151770670 -90893683 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 189 74 0 0 chr1 151770668 151770695 -90893658 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 283 196 0 0 chr1 151770695 151770746 -90893607 - Alu SINE Alu -5 295 245 2386 223 50 29 chr1 151770746 151771541 -90892812 - L1ME1 LINE L1 -698 6297 5496 1806 215 38 29 chr1 151771572 151772126 -90892227 - L1ME1 LINE L1 -3196 3761 3203 1040 252 58 52 chr1 151772126 151772650 -90891703 - L1ME1 LINE L1 -5189 1758 1239 2087 229 115 70 chr1 151772705 151773400 -90890953 + MER21B LTR ERV1 13 738 -125 1816 163 3 0 chr1 151773491 151773780 -90890573 + AluJb SINE Alu 11 300 -12 192 158 0 0 chr1 151774441 151774479 -90889874 + GA-rich Low_complexity Low_complexity 3 40 0 3351 149 93 40 chr1 151774508 151774649 -90889704 + MER4B-int LTR ERV1 6045 6177 -581 2283 93 17 0 chr1 151774649 151774940 -90889413 - AluSp SINE Alu -17 296 1 3351 149 93 40 chr1 151774940 151775475 -90888878 + MER4B-int LTR ERV1 6177 6757 -1 3893 105 21 34 chr1 151775476 151776094 -90888259 + MER4B LTR ERV1 1 610 0 1363 217 75 10 chr1 151776094 151776389 -90887964 + LTR32 LTR ERVL 153 466 -5 7540 217 44 17 chr1 151776395 151779143 -90885210 + L1MA5 LINE L1 1814 4680 -2168 1629 168 36 31 chr1 151779139 151779527 -90884826 + L1MA5 LINE L1 5064 5453 -1395 * 2415 140 28 33 chr1 151779527 151779573 -90884780 - MSTB LTR MaLR 0 426 381 2107 133 27 35 chr1 151779573 151779940 -90884413 + THE1B LTR MaLR 1 364 0 2415 140 28 33 chr1 151779940 151780321 -90884032 - MSTB LTR MaLR -45 381 1 2815 172 29 32 chr1 151780323 151781071 -90883282 + L1MA5 LINE L1 5451 6190 -743 1541 203 10 22 chr1 151781074 151781385 -90882968 + AluJo SINE Alu 2 308 -4 3881 139 11 28 chr1 151781385 151782083 -90882270 + L1MA5 LINE L1 6294 6996 -6 2123 256 43 28 chr1 151782142 151782717 -90881636 + MLT1E LTR MaLR 10 593 0 244 195 0 46 chr1 151783372 151783459 -90880894 + CT-rich Low_complexity Low_complexity 6 88 0 1941 141 93 3 chr1 151783515 151783849 -90880504 - THE1B LTR MaLR 0 364 1 1798 120 85 0 chr1 151783919 151784224 -90880129 + AluSx SINE Alu 1 327 0 24 0 0 0 chr1 151784224 151784248 -90880105 + AT_rich Low_complexity Low_complexity 1 24 0 1673 146 185 14 chr1 151784249 151784422 -90879931 + MSTA LTR MaLR 5 147 -281 180 0 0 0 chr1 151784422 151784442 -90879911 + (TC)n Simple_repeat Simple_repeat 1 20 0 1673 146 185 14 chr1 151784442 151784630 -90879723 + MSTA LTR MaLR 147 428 0 258 81 0 0 chr1 151784645 151784682 -90879671 + (CA)n Simple_repeat Simple_repeat 1 37 0 1415 159 98 61 chr1 151784701 151785028 -90879325 - MER2 DNA MER2_type 0 345 7 269 227 16 47 chr1 151785122 151785250 -90879103 + T-rich Low_complexity Low_complexity 5 128 0 369 328 227 26 chr1 151787069 151788223 -90876130 + L2 LINE L2 1889 3272 0 264 349 74 7 chr1 151788217 151788366 -90875987 + MIR3 SINE MIR 49 207 -1 * 2087 201 56 71 chr1 151788408 151789029 -90875324 + LTR9 LTR ERV1 1 612 0 3670 152 38 36 chr1 151789884 151790596 -90873757 + LTR8A LTR ERV1 7 719 -8 4623 97 3 5 chr1 151790650 151791290 -90873063 - L1PA11 LINE L1 -3 6171 5533 1179 174 5 0 chr1 151791575 151791794 -90872559 + AluY SINE Alu 94 306 -5 689 161 27 40 chr1 151791823 151791972 -90872381 + FRAM SINE Alu 1 40 0 396 327 58 16 chr1 151791975 151792232 -90872121 + L1M4 LINE L1 2204 2471 -3675 198 71 0 0 chr1 151792331 151792359 -90871994 + (CA)n Simple_repeat Simple_repeat 2 29 0 445 297 78 44 chr1 151792365 151792658 -90871695 + L1M4 LINE L1 2638 2940 -3206 654 308 100 7 chr1 151792804 151793383 -90870970 - L1M4 LINE L1 -1495 4651 4018 1596 190 0 30 chr1 151793415 151793715 -90870638 - AluJb SINE Alu -11 301 11 451 303 202 18 chr1 151793930 151794148 -90870205 + MIR SINE MIR 2 259 -3 279 356 23 17 chr1 151794527 151794704 -90869649 - L2 LINE L2 -1420 1894 1717 277 287 46 0 chr1 151795554 151795641 -90868712 + MIR3 SINE MIR 118 208 0 298 324 64 75 chr1 151795851 151796024 -90868329 - MER91A DNA MER1_type -25 171 1 25 0 0 0 chr1 151796450 151796475 -90867878 + AT_rich Low_complexity Low_complexity 1 25 0 286 302 6 77 chr1 151796730 151796912 -90867441 + MLT1J LTR MaLR 116 284 -227 749 316 243 25 chr1 151797279 151798144 -90866209 + L2 LINE L2 782 1834 -1480 225 242 42 21 chr1 151798548 151798643 -90865710 - L1ME LINE L1 -285 5885 5789 758 268 75 9 chr1 151798671 151798899 -90865454 + MIR SINE MIR 4 246 -16 298 284 12 49 chr1 151798914 151799076 -90865277 - LTR33 LTR ERVL -22 499 344 724 161 0 0 chr1 151799209 151799327 -90865026 + AluJb SINE Alu 1 118 -194 45 0 0 0 chr1 151799330 151799375 -90864978 + AT_rich Low_complexity Low_complexity 1 45 0 329 184 58 23 chr1 151799510 151799597 -90864756 + MER103 DNA DNA 10 99 -67 1753 147 3 0 chr1 151800387 151800680 -90863673 + L1PA13 LINE L1 5870 6163 0 301 233 27 62 chr1 151801121 151801267 -90863086 + MLT1L LTR MaLR 449 589 -26 1129 184 68 42 chr1 151801621 151802006 -90862347 + Charlie4a DNA MER1_type 27 421 -87 212 132 0 75 chr1 151802006 151802059 -90862294 + (TAAAAA)n Simple_repeat Simple_repeat 4 52 0 326 207 85 0 chr1 151802059 151802141 -90862212 + Charlie4a DNA MER1_type 414 502 -6 1082 209 103 9 chr1 151802537 151802868 -90861485 - L1ME3A LINE L1 -6 6164 5803 696 215 18 12 chr1 151802882 151803045 -90861308 + Charlie1 DNA MER1_type 12 175 -2586 460 194 14 69 chr1 151803062 151803206 -90861147 + Charlie1 DNA MER1_type 2622 2757 -4 1572 225 69 6 chr1 151803215 151803708 -90860645 - L1ME3A LINE L1 -367 5795 5272 438 296 95 41 chr1 151803761 151804038 -90860315 - L1MC4 LINE L1 -135 7673 7360 1840 172 154 29 chr1 151804038 151804485 -90859868 + MLT1D LTR MaLR 1 503 -2 438 296 95 41 chr1 151804485 151804517 -90859836 - L1MC4 LINE L1 -448 7360 7331 1724 309 78 51 chr1 151804595 151804642 -90859711 - HERVL LTR ERVL -2937 2717 2673 1742 162 43 0 chr1 151804642 151804915 -90859438 + AluSx SINE Alu 1 286 -22 315 0 0 0 chr1 151804915 151804950 -90859403 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1724 309 78 51 chr1 151804954 151805548 -90858805 - HERVL LTR ERVL -2981 2673 2097 2197 133 3 15 chr1 151805548 151805886 -90858467 + MER1B DNA MER1_type 1 334 -3 1724 309 78 51 chr1 151805886 151806274 -90858079 - HERVL LTR ERVL -3557 2097 1721 1914 123 63 0 chr1 151806274 151806571 -90857782 - AluSx SINE Alu 0 314 1 1724 309 78 51 chr1 151806571 151807054 -90857299 - HERVL LTR ERVL -3933 1721 1160 5983 124 42 6 chr1 151807345 151808586 -90855767 - L1MA6 LINE L1 0 6300 5023 2369 88 3 0 chr1 151809350 151809646 -90854707 - AluSp SINE Alu -16 297 1 997 255 70 6 chr1 151809654 151809968 -90854385 - LTR50 LTR ERVL -33 762 429 896 272 143 59 chr1 151810420 151810646 -90853707 + L2 LINE L2 2555 2761 -552 1683 160 70 17 chr1 151810646 151811002 -90853351 - THE1C LTR MaLR 0 375 1 10548 114 28 7 chr1 151811002 151812550 -90851803 - THE1C-int LTR MaLR 0 1580 1 1857 134 73 25 chr1 151812550 151812908 -90851445 - THE1C LTR MaLR 0 375 1 896 272 143 59 chr1 151812908 151813380 -90850973 + L2 LINE L2 2760 3311 -2 24 32 0 0 chr1 151814603 151814634 -90849719 + AT_rich Low_complexity Low_complexity 1 31 0 273 279 19 48 chr1 151814679 151814783 -90849570 - MIR SINE MIR -52 210 110 23 0 0 0 chr1 151815174 151815197 -90849156 + AT_rich Low_complexity Low_complexity 1 23 0 285 331 29 66 chr1 151815378 151815514 -90848839 + MIR3 SINE MIR 5 135 -73 968 251 141 46 chr1 151816304 151816851 -90847502 - L1MC4 LINE L1 -233 7809 7211 1178 188 8 136 chr1 151816948 151817464 -90846889 - LTR7 LTR ERV1 0 450 1 670 258 127 7 chr1 151817469 151817752 -90846601 - L1M4 LINE L1 -1952 4194 3878 492 304 40 34 chr1 151817756 151818105 -90846248 - L1M4 LINE L1 -2319 3827 3477 558 213 144 47 chr1 151818111 151818563 -90845790 - MLT1H1 LTR MaLR -7 588 1 622 269 35 29 chr1 151819767 151819938 -90844415 - MER91B DNA MER1_type -2 188 17 369 206 137 74 chr1 151820012 151820109 -90844244 + L1ME2 LINE L1 5258 5347 -817 2211 99 3 3 chr1 151820109 151820401 -90843952 + AluSc SINE Alu 1 292 -17 369 206 137 74 chr1 151820401 151820478 -90843875 + L1ME2 LINE L1 5347 5443 -721 411 257 0 21 chr1 151820596 151820740 -90843613 + L1ME2 LINE L1 5417 5557 -607 1887 156 16 10 chr1 151820974 151821281 -90843072 + AluJb SINE Alu 1 309 -3 2029 113 3 42 chr1 151822767 151823077 -90841276 + AluSx SINE Alu 1 298 -14 1287 229 37 67 chr1 151823584 151824094 -90840259 + L1ME2 LINE L1 5548 6042 -122 1638 188 18 0 chr1 151824118 151824390 -90839963 - AluJo SINE Alu -35 277 1 300 243 0 0 chr1 151824393 151824463 -90839890 + L1ME2 LINE L1 6036 6105 -59 1072 259 99 29 chr1 151824487 151824900 -90839453 + L2 LINE L2 2871 3312 -1 23 33 0 0 chr1 151825340 151825370 -90838983 + AT_rich Low_complexity Low_complexity 1 30 0 196 359 184 0 chr1 151825914 151826017 -90838336 - L2 LINE L2 -10 3262 3141 206 366 82 29 chr1 151826189 151826495 -90837858 - L2 LINE L2 -352 2962 2641 12552 118 26 15 chr1 151826701 151827795 -90836558 - Tigger1 DNA MER2_type -298 2120 1040 2334 55 41 3 chr1 151827795 151828085 -90836268 + AluY SINE Alu 1 301 -10 12552 118 26 15 chr1 151828085 151828235 -90836118 - Tigger1 DNA MER2_type -1378 1040 893 2117 131 30 24 chr1 151828235 151828608 -90835745 - THE1C LTR MaLR 0 375 1 12552 118 26 15 chr1 151828608 151829455 -90834898 - Tigger1 DNA MER2_type -1525 893 5 2223 117 41 19 chr1 151829491 151829858 -90834495 + THE1C LTR MaLR 1 375 0 441 333 62 44 chr1 151831358 151831490 -90832863 + MIR SINE MIR 3 142 -120 315 0 0 0 chr1 151831490 151831525 -90832828 + (TG)n Simple_repeat Simple_repeat 2 36 0 441 333 62 44 chr1 151831525 151831617 -90832736 + MIR SINE MIR 142 231 -31 211 28 56 0 chr1 151832020 151832056 -90832297 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1905 193 25 3 chr1 151832132 151832489 -90831864 + MLT1A1 LTR MaLR 1 365 0 556 170 36 0 chr1 151832528 151832640 -90831713 + L1PB2 LINE L1 6033 6148 -3 838 154 0 0 chr1 151832765 151832888 -90831465 + FLAM_C SINE Alu 1 123 -20 555 91 114 0 chr1 151833999 151834087 -90830266 + FRAM SINE Alu 62 159 -17 183 318 111 0 chr1 151834117 151834180 -90830173 + L3 LINE CR1 1027 1096 -481 241 286 0 0 chr1 151834380 151834436 -90829917 - L2 LINE L2 -11 3302 3247 505 304 29 29 chr1 151834539 151834746 -90829607 + L2 LINE L2 2247 2453 -861 187 352 88 33 chr1 151834752 151834843 -90829510 - L2 LINE L2 -18 3295 3200 463 316 116 28 chr1 151834857 151835211 -90829142 + L2 LINE L2 2460 2844 -470 404 260 7 84 chr1 151835338 151835492 -90828861 + L2 LINE L2 3167 3308 -5 190 297 238 11 chr1 151836009 151836278 -90828075 - L2 LINE L2 -1035 2279 1950 198 243 10 117 chr1 151836335 151836438 -90827915 - L2 LINE L2 -1837 1477 1386 21 0 0 0 chr1 151837479 151837500 -90826853 + AT_rich Low_complexity Low_complexity 1 21 0 207 270 95 0 chr1 151837698 151837772 -90826581 - MIR SINE MIR -11 251 171 * 774 302 20 12 chr1 151837766 151838021 -90826332 - MIR SINE MIR 0 262 6 524 253 80 12 chr1 151838694 151838856 -90825497 + MIR3 SINE MIR 13 185 -23 322 295 145 48 chr1 151838863 151839090 -90825263 + MIR SINE MIR 14 262 0 1187 296 98 57 chr1 151840789 151840928 -90823425 + L3 LINE CR1 618 750 -827 1848 154 13 16 chr1 151840928 151841233 -90823120 + AluJb SINE Alu 1 304 -8 1187 296 98 57 chr1 151841233 151842005 -90822348 + L3 LINE CR1 750 1566 -11 1946 144 14 0 chr1 151842383 151842668 -90821685 - AluJb SINE Alu -2 310 22 979 197 58 10 chr1 151842670 151842878 -90821475 - MER20 DNA MER1_type 0 219 2 29 28 0 0 chr1 151843920 151843956 -90820397 + AT_rich Low_complexity Low_complexity 1 36 0 351 0 0 0 chr1 151844598 151844637 -90819716 + (CA)n Simple_repeat Simple_repeat 2 40 0 180 283 22 0 chr1 151845524 151845570 -90818783 - L2 LINE L2 -4 3268 3222 1807 149 24 0 chr1 151846883 151847171 -90817182 - MSTA LTR MaLR 0 428 134 3450 171 58 10 chr1 151847172 151847868 -90816485 + L1MC1 LINE L1 5604 6332 -1 7118 224 111 42 chr1 151847868 151849898 -90814455 - L1MEc LINE L1 -1291 4924 3035 1875 230 40 40 chr1 151849898 151850403 -90813950 - MLT1D LTR MaLR 0 505 1 7118 224 111 42 chr1 151850403 151851328 -90813025 - L1MEc LINE L1 -3180 3035 1776 2716 163 12 0 chr1 151851328 151851808 -90812545 - L1PB4 LINE L1 -13 6143 5658 7118 224 111 42 chr1 151851808 151851982 -90812371 - L1MEc LINE L1 -4439 1776 1615 1530 209 0 11 chr1 151851988 151852266 -90812087 + AluJo SINE Alu 1 275 -37 2232 96 0 0 chr1 151852433 151852746 -90811607 - AluSc SINE Alu 0 313 1 277 300 56 0 chr1 151852746 151852836 -90811517 - MER2 DNA MER2_type -248 97 3 1365 223 91 89 chr1 151852838 151853671 -90810682 - L1MEc LINE L1 -4789 1607 773 931 339 38 8 chr1 151853671 151854043 -90810310 - L1MEc LINE L1 -5970 426 44 267 319 90 90 chr1 151855083 151855371 -90808982 + L2 LINE L2 2985 3272 0 226 385 78 14 chr1 151856509 151856727 -90807626 - L2 LINE L2 -1702 1612 1381 2119 217 72 22 chr1 151857223 151857726 -90806627 + MER119 DNA MER1_type 2 529 -54 482 260 123 89 chr1 151858052 151858697 -90805656 - L1ME4a LINE L1 -15 6106 5431 2082 135 0 0 chr1 151858697 151859001 -90805352 - AluSg SINE Alu -6 304 1 482 260 123 89 chr1 151859001 151859098 -90805255 - L1ME4a LINE L1 -690 5431 5339 2046 104 3 14 chr1 151859103 151859423 -90804930 - AluSq SINE Alu 0 317 1 180 111 0 0 chr1 151860155 151860182 -90804171 + (TA)n Simple_repeat Simple_repeat 1 27 0 319 207 115 0 chr1 151860518 151860605 -90803748 - L1MC4 LINE L1 -2 8040 7944 227 273 15 15 chr1 151860637 151860703 -90803650 - L2 LINE L2 -5 3267 3202 509 177 10 0 chr1 151861730 151861826 -90802527 + L1MC1 LINE L1 6231 6327 -6 226 362 8 0 chr1 151862326 151862453 -90801900 + L1P LINE L1 4883 5010 -1136 1851 175 21 148 chr1 151863577 151864189 -90800164 - Tigger7 DNA MER2_type 0 2487 1799 1426 205 36 7 chr1 151864189 151864467 -90799886 + AluJo SINE Alu 1 286 -26 1851 175 21 148 chr1 151864467 151864666 -90799687 - Tigger7 DNA MER2_type -688 1799 1 357 245 64 0 chr1 151866153 151866247 -90798106 - L1ME LINE L1 -502 5619 5520 24 0 0 0 chr1 151867005 151867029 -90797324 + AT_rich Low_complexity Low_complexity 1 24 0 221 159 0 87 chr1 151867398 151867467 -90796886 + GA-rich Low_complexity Low_complexity 3 65 0 2561 37 0 3 chr1 151867636 151867935 -90796418 + AluY SINE Alu 1 298 -13 193 327 0 0 chr1 151868216 151868268 -90796085 + L2 LINE L2 3254 3305 -8 188 262 33 16 chr1 151868346 151868407 -90795946 + MER5A DNA MER1_type 80 141 -48 1774 288 144 35 chr1 151868430 151869447 -90794906 - L3 LINE CR1 -109 1468 342 21 0 0 0 chr1 151869596 151869617 -90794736 + AT_rich Low_complexity Low_complexity 1 21 0 211 225 0 0 chr1 151869642 151869682 -90794671 + T-rich Low_complexity Low_complexity 2 41 0 202 400 33 0 chr1 151870085 151870175 -90794178 - L2 LINE L2 -9 3263 3171 2508 48 0 0 chr1 151870201 151870496 -90793857 + AluY SINE Alu 1 295 -16 620 208 8 0 chr1 151870642 151870767 -90793586 - MER3 DNA MER1_type -1 208 83 1017 157 24 43 chr1 151870990 151871200 -90793153 + MER3 DNA MER1_type 4 209 0 24 77 0 0 chr1 151872405 151872457 -90791896 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr1 151873252 151873277 -90791076 + AT_rich Low_complexity Low_complexity 1 25 0 211 293 173 45 chr1 151873419 151873552 -90790801 - MIR SINE MIR -15 247 98 383 200 27 0 chr1 151873699 151873774 -90790579 + MIR SINE MIR 186 262 0 499 145 48 32 chr1 151874595 151874719 -90789634 - Charlie4 DNA MER1_type -36 1925 1800 2126 196 66 7 chr1 151875033 151875487 -90788866 + MER119 DNA MER1_type 32 512 -71 214 309 137 46 chr1 151875565 151875740 -90788613 + L2 LINE L2 2828 3018 -254 1925 124 0 7 chr1 151875764 151876047 -90788306 - AluSx SINE Alu -30 282 2 223 203 0 17 chr1 151876075 151876134 -90788219 + T-rich Low_complexity Low_complexity 3 60 0 207 367 138 0 chr1 151876146 151876255 -90788098 + L2 LINE L2 3145 3268 -4 1285 92 0 0 chr1 151877212 151877375 -90786978 + AluY SINE Alu 1 163 -148 405 164 0 0 chr1 151877375 151877448 -90786905 + (TA)n Simple_repeat Simple_repeat 1 73 0 280 281 206 38 chr1 151877831 151877991 -90786362 - MER5A DNA MER1_type -2 187 1 2178 158 89 5 chr1 151878063 151878480 -90785873 - Tigger2 DNA MER2_type 0 2718 2267 346 232 0 0 chr1 151878464 151878533 -90785820 - Tigger2 DNA MER2_type -2649 69 1 * 869 180 81 6 chr1 151878997 151879169 -90785184 - MER5A DNA MER1_type -4 185 1 557 256 154 0 chr1 151879223 151879379 -90784974 - MER5A DNA MER1_type 0 189 10 206 328 0 16 chr1 151879458 151879522 -90784831 + MIR SINE MIR 200 262 0 555 340 24 0 chr1 151879535 151879741 -90784612 + MIR SINE MIR 7 217 -45 438 222 0 0 chr1 151880289 151880370 -90783983 - MER81 DNA DNA -32 82 2 1821 183 30 108 chr1 151880655 151881254 -90783099 - MLT1F1 LTR MaLR -9 558 1 465 216 72 0 chr1 151882988 151883085 -90781268 + L2 LINE L2 3208 3311 -2 724 250 90 59 chr1 151883136 151883732 -90780621 - L1ME LINE L1 -343 5821 5188 255 264 154 0 chr1 151883835 151883926 -90780427 + L2 LINE L2 3150 3254 -18 1727 170 20 0 chr1 151883927 151884227 -90780126 - AluJo SINE Alu -6 306 1 1067 234 9 0 chr1 151884298 151884512 -90779841 + MER58A DNA MER1_type 1 216 -8 276 254 0 30 chr1 151984852 151984919 -90679434 + tRNA-Ala-GCG tRNA tRNA 1 65 -10 441 0 0 0 chr1 151985251 151985300 -90679053 + (TC)n Simple_repeat Simple_repeat 2 50 0 234 81 0 0 chr1 151985301 151985338 -90679015 + (CA)n Simple_repeat Simple_repeat 2 38 0 445 273 53 62 chr1 151986126 151986481 -90677872 + L1MEc LINE L1 1731 2082 -4314 459 226 31 67 chr1 151986635 151986830 -90677523 + L1MB8 LINE L1 3850 4037 -2109 2886 220 64 91 chr1 151986837 151988408 -90675945 + L1MB8 LINE L1 4204 5721 -521 5656 27 0 3 chr1 151988408 151989073 -90675280 - L1PA4 LINE L1 -2 6153 5491 2190 183 20 13 chr1 151989089 151989537 -90674816 + L1MB8 LINE L1 5728 6178 0 205 302 69 52 chr1 151989995 151990111 -90674242 + MIR SINE MIR 21 138 -70 39 38 0 0 chr1 151990213 151990266 -90674087 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr1 151991053 151991076 -90673277 + AT_rich Low_complexity Low_complexity 1 23 0 746 265 12 0 chr1 151991730 151991896 -90672457 - MER45A DNA AcHobo -7 171 4 242 365 12 0 chr1 151991896 151991981 -90672372 + L2 LINE L2 3143 3228 -44 288 0 0 0 chr1 151993890 151993922 -90670431 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 339 25 0 0 chr1 151993921 151993961 -90670392 + (GA)n Simple_repeat Simple_repeat 2 41 0 1844 198 61 73 chr1 151994748 151994862 -90669491 + MLT1D LTR MaLR 1 115 -390 230 0 0 32 chr1 151994862 151994893 -90669460 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 1844 198 61 73 chr1 151994893 151995283 -90669070 + MLT1D LTR MaLR 115 499 -6 294 194 0 16 chr1 151995502 151995564 -90668789 - MLT1E LTR MaLR 0 624 564 706 212 0 0 chr1 151995565 151995702 -90668651 - FRAM SINE Alu -2 174 38 1824 251 20 42 chr1 151995705 151996250 -90668103 - MLT1E LTR MaLR -59 534 2 186 43 0 0 chr1 151997269 151997292 -90667061 + (ATG)n Simple_repeat Simple_repeat 3 25 0 234 0 0 0 chr1 151997297 151997323 -90667030 + (TG)n Simple_repeat Simple_repeat 2 27 0 186 388 0 0 chr1 151998258 151998325 -90666028 + L2 LINE L2 2987 3053 -219 300 325 9 26 chr1 151998707 151998821 -90665532 - L2 LINE L2 -2 3311 3200 207 309 0 15 chr1 151999089 151999157 -90665196 - MIR SINE MIR -43 219 153 245 222 69 28 chr1 152000099 152000171 -90664182 - L3 LINE CR1 -1 1576 1502 950 78 0 0 chr1 152000396 152000511 -90663842 + AluSq/x SINE Alu 4 118 -194 41290 43 6 1 chr1 152000511 152006634 -90657719 + L1PA4 LINE L1 1 6152 -3 1642 86 5 0 chr1 152006650 152006860 -90657493 + AluSp SINE Alu 103 313 0 1253 233 50 30 chr1 152007013 152007374 -90656979 + MLT1A2 LTR MaLR 7 374 0 390 300 24 62 chr1 152007782 152007992 -90656361 - L1MC4a LINE L1 -1884 5924 5723 1535 103 43 13 chr1 152008221 152008453 -90655900 + AluSg/x SINE Alu 74 312 0 314 338 73 58 chr1 152011008 152011472 -90652881 + MLT1K LTR MaLR 100 570 -18 1642 178 39 9 chr1 152013608 152013939 -90650414 - MER2 DNA MER2_type -1 343 3 1922 140 4 4 chr1 152014492 152014817 -90649536 + AluSx SINE Alu 5 329 0 30 27 0 0 chr1 152014914 152014951 -90649402 + AT_rich Low_complexity Low_complexity 1 37 0 762 221 121 8 chr1 152014962 152015202 -90649151 + L1MD3 LINE L1 7729 7995 0 181 71 0 71 chr1 152015404 152015446 -90648907 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 195 158 26 0 chr1 152015743 152015781 -90648572 + L2 LINE L2 3275 3313 0 276 390 16 8 chr1 152016874 152016997 -90647356 - MIR SINE MIR -119 143 20 450 341 57 16 chr1 152017213 152017459 -90646894 + MIR SINE MIR 7 262 0 405 86 0 0 chr1 152017595 152017653 -90646700 + (TG)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr1 152019468 152019497 -90644856 + AT_rich Low_complexity Low_complexity 1 29 0 1096 168 67 126 chr1 152021951 152022339 -90642014 + MLT1A1 LTR MaLR 1 365 0 431 314 96 31 chr1 152023703 152023863 -90640490 + MIR SINE MIR 28 198 -10 180 330 200 0 chr1 152025708 152025808 -90638545 - L2 LINE L2 -16 3256 3137 406 319 59 12 chr1 152026095 152026264 -90638089 + MIR SINE MIR 57 233 -29 991 206 24 44 chr1 152026460 152026708 -90637645 + MIR SINE MIR 10 252 -10 494 119 12 0 chr1 152027799 152027883 -90636470 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 185 318 32 0 chr1 152028284 152028347 -90636006 + L3 LINE CR1 930 994 -583 220 326 53 0 chr1 152028383 152028478 -90635875 + L3b LINE CR1 1104 1203 -380 413 307 85 82 chr1 152028598 152028927 -90635426 - L2 LINE L2 0 3272 2943 225 284 116 32 chr1 152029082 152029177 -90635176 - L2 LINE L2 -12 3260 3158 252 288 12 25 chr1 152029181 152029261 -90635092 - L2 LINE L2 -6 3266 3188 512 241 77 116 chr1 152029411 152029997 -90634356 - MLT1H1 LTR MaLR -9 581 3 188 305 73 24 chr1 152030138 152030220 -90634133 + MIR SINE MIR 15 100 -162 577 257 49 87 chr1 152030748 152031118 -90633235 - MLT1I LTR MaLR -6 403 48 379 158 14 137 chr1 152032097 152032243 -90632110 - L1MC3 LINE L1 -15 7770 7643 311 314 81 24 chr1 152033213 152033337 -90631016 + MIR SINE MIR 131 261 -1 3259 114 22 67 chr1 152033364 152033916 -90630437 + MER1A DNA MER1_type 1 527 0 652 241 38 68 chr1 152034098 152034363 -90629990 + MLT1J LTR MaLR 220 476 -35 332 316 0 0 chr1 152034964 152035059 -90629294 + L2 LINE L2 3180 3274 -39 231 286 88 78 chr1 152036237 152036762 -90627591 - L1MC5 LINE L1 -162 7799 7270 222 282 0 47 chr1 152037192 152037277 -90627076 + MIR3 SINE MIR 123 203 -5 234 0 0 0 chr1 152037558 152037584 -90626769 + (CA)n Simple_repeat Simple_repeat 1 26 0 498 316 27 11 chr1 152037778 152037965 -90626388 + L3 LINE CR1 1190 1379 -198 414 232 13 7 chr1 152038902 152039057 -90625296 + (CA)n Simple_repeat Simple_repeat 1 156 0 354 322 7 41 chr1 152039074 152039220 -90625133 + MIR SINE MIR 51 191 -71 333 357 54 0 chr1 152041236 152041365 -90622988 + MIR3 SINE MIR 63 198 -10 218 311 10 58 chr1 152041640 152041743 -90622610 + MIR SINE MIR 78 175 -87 800 257 24 73 chr1 152042007 152042295 -90622058 - Charlie8 DNA MER1_type -2143 274 1 484 302 29 47 chr1 152042901 152043073 -90621280 + MIR3 SINE MIR 17 185 -23 239 234 27 197 chr1 152043807 152043995 -90620358 - L2 LINE L2 0 3272 3117 219 269 0 0 chr1 152044800 152044852 -90619501 - MIR SINE MIR -37 225 174 28 99 0 0 chr1 152044966 152045057 -90619296 + AT_rich Low_complexity Low_complexity 1 91 0 186 80 0 0 chr1 152045351 152045376 -90618977 + MIR SINE MIR 82 106 -102 492 301 141 0 chr1 152045674 152045873 -90618480 - MIR SINE MIR -2 260 34 229 316 143 0 chr1 152045987 152046085 -90618268 + L2 LINE L2 3158 3269 -3 21 36 0 0 chr1 152046493 152046521 -90617832 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 152046842 152046863 -90617490 + AT_rich Low_complexity Low_complexity 1 21 0 1391 104 48 52 chr1 152047149 152047248 -90617105 - MER30 DNA MER1_type 0 230 132 2202 122 3 0 chr1 152047248 152047551 -90616802 + AluSq SINE Alu 1 304 -9 1391 104 48 52 chr1 152047551 152047682 -90616671 - MER30 DNA MER1_type -98 132 1 277 263 25 25 chr1 152048347 152048427 -90615926 - MLT1J LTR MaLR -42 469 390 213 265 48 0 chr1 152048516 152048599 -90615754 + GA-rich Low_complexity Low_complexity 2 88 0 412 340 6 6 chr1 152049133 152049292 -90615061 - ERVL LTR ERVL -392 5372 5214 1431 307 82 50 chr1 152049413 152050318 -90614035 - ERVL LTR ERVL -2589 3065 2098 5195 162 16 28 chr1 152050647 152052236 -90612117 - L1PB1 LINE L1 -1 6150 4592 634 261 116 15 chr1 152053058 152053257 -90611096 - MLT1J LTR MaLR -235 276 58 1701 235 79 67 chr1 152053287 152054031 -90610322 + MER20B DNA MER1_type 30 782 -1 22 0 0 0 chr1 152054678 152054700 -90609653 + AT_rich Low_complexity Low_complexity 1 22 0 583 244 72 31 chr1 152056173 152056366 -90607987 + MIR SINE MIR 62 262 0 201 154 0 0 chr1 152058116 152058155 -90606198 + CT-rich Low_complexity Low_complexity 3 41 0 548 126 0 11 chr1 152058444 152058539 -90605814 - L1MA6 LINE L1 0 6300 6207 27 29 0 0 chr1 152060984 152061018 -90603335 + AT_rich Low_complexity Low_complexity 1 34 0 457 307 26 32 chr1 152061364 152061553 -90602800 + MIR SINE MIR 74 261 -1 264 298 53 0 chr1 152062014 152062108 -90602245 - MIR SINE MIR -74 188 90 309 100 0 0 chr1 152062538 152062588 -90601765 + (CA)n Simple_repeat Simple_repeat 2 51 0 816 244 0 17 chr1 152063341 152063521 -90600832 - MER45A DNA AcHobo -1 177 1 1591 273 57 107 chr1 152064051 152064913 -90599440 + HAL1 LINE L1 1 860 -1647 383 186 29 0 chr1 152064913 152064983 -90599370 - MER45 DNA AcHobo -1464 117 46 1591 273 57 107 chr1 152064983 152065248 -90599105 + HAL1 LINE L1 860 1137 -1370 462 248 101 0 chr1 152065766 152065875 -90598478 + L2 LINE L2 3194 3313 0 361 123 35 0 chr1 152066090 152066147 -90598206 + MER94 DNA DNA 1 59 -75 22 35 0 0 chr1 152066292 152066321 -90598032 + AT_rich Low_complexity Low_complexity 1 29 0 251 270 0 16 chr1 152068882 152068945 -90595408 + (TG)n Simple_repeat Simple_repeat 1 62 0 1424 267 175 46 chr1 152070082 152071314 -90593039 + HAL1 LINE L1 726 2126 -381 1937 176 30 0 chr1 152071314 152071650 -90592703 + MER7A DNA MER2_type 2 345 -1 1424 267 175 46 chr1 152071650 152071682 -90592671 + HAL1 LINE L1 2126 2153 -354 5077 163 21 21 chr1 152071686 152072421 -90591932 + L1MA8 LINE L1 4585 5319 -972 1797 106 0 0 chr1 152072421 152072657 -90591696 + AluY SINE Alu 64 299 -12 5077 163 21 21 chr1 152072657 152073299 -90591054 + L1MA8 LINE L1 5319 5965 -326 1885 162 106 5 chr1 152073299 152073687 -90590666 - MSTA LTR MaLR 0 428 2 5077 163 21 21 chr1 152073687 152074010 -90590343 + L1MA8 LINE L1 5965 6287 -4 373 306 34 74 chr1 152074007 152074360 -90589993 + HAL1 LINE L1 2146 2484 -23 * 222 339 0 0 chr1 152074741 152074806 -90589547 - L2 LINE L2 -4 3268 3204 758 292 0 0 chr1 152077773 152077958 -90586395 + MER5A DNA MER1_type 5 189 0 225 286 29 0 chr1 152077962 152078032 -90586321 - MIR SINE MIR -170 92 21 219 341 0 0 chr1 152078548 152078630 -90585723 + GA-rich Low_complexity Low_complexity 1 82 0 193 359 207 15 chr1 152079415 152079613 -90584740 + MIR SINE MIR 27 262 0 433 316 39 43 chr1 152080056 152080287 -90584066 - MIR SINE MIR -9 253 24 2369 74 17 0 chr1 152080604 152080901 -90583452 + AluY SINE Alu 1 302 -9 21 0 0 0 chr1 152081059 152081080 -90583273 + AT_rich Low_complexity Low_complexity 1 21 0 1244 176 50 17 chr1 152081653 152081955 -90582398 + L1MA8 LINE L1 5980 6291 0 729 358 125 22 chr1 152083516 152084362 -90579991 - L2 LINE L2 -8 3264 2358 840 308 87 35 chr1 152084652 152085291 -90579062 + L2 LINE L2 2654 3313 0 618 246 11 77 chr1 152085435 152085618 -90578735 - MER5B DNA MER1_type -7 171 1 2014 121 0 0 chr1 152085947 152086219 -90578134 - AluSx SINE Alu -14 298 27 277 344 25 25 chr1 152087978 152088141 -90576212 + L3 LINE CR1 1403 1565 -12 263 283 26 6 chr1 152088368 152088444 -90575909 - MIR3 SINE MIR -36 172 95 268 271 24 24 chr1 152089180 152089265 -90575088 + MIR SINE MIR 60 144 -118 440 304 40 53 chr1 152089813 152090040 -90574313 + MIR SINE MIR 21 244 -18 996 281 77 29 chr1 152090230 152090674 -90573679 + Tigger8 DNA MER2_type 157 621 -45 978 242 14 5 chr1 152092149 152092360 -90571993 - MER58A DNA MER1_type -2 222 10 1232 310 21 45 chr1 152092753 152093331 -90571022 - HERV16 LTR ERVL -1146 4618 4055 1248 282 113 49 chr1 152093519 152094146 -90570207 - HERV16 LTR ERVL -2724 2272 1606 507 336 63 5 chr1 152094172 152094395 -90569958 - HERV16 LTR ERVL -3518 1478 1243 181 321 85 48 chr1 152094410 152094575 -90569778 - L2 LINE L2 -250 3022 2852 527 338 15 15 chr1 152095277 152095481 -90568872 - L3 LINE CR1 -11 1566 1363 1714 117 4 15 chr1 152096051 152096315 -90568038 - Tigger7 DNA MER2_type 0 2491 2231 234 250 0 18 chr1 152096312 152096368 -90567985 - Tigger7 DNA MER2_type -2432 55 1 * 1372 214 72 43 chr1 152096371 152096787 -90567566 - MER39 LTR ERV1 -23 684 257 1453 98 25 0 chr1 152097127 152097330 -90567023 + AluSg/x SINE Alu 86 293 -19 220 344 45 32 chr1 152097468 152097622 -90566731 + MIR SINE MIR 52 207 -55 1181 259 121 26 chr1 152097696 152098160 -90566193 - LTR33A LTR ERVL -2 521 14 1384 116 0 0 chr1 152098295 152098510 -90565843 - L1MA2 LINE L1 0 6304 6090 248 348 74 30 chr1 152100126 152100261 -90564092 - MIR3 SINE MIR -11 197 57 265 364 34 0 chr1 152101021 152101139 -90563214 + MIR SINE MIR 70 191 -71 312 302 188 7 chr1 152101694 152101843 -90562510 - MLT1K LTR MaLR -346 242 67 235 352 57 19 chr1 152101972 152102131 -90562222 - MIR3 SINE MIR -3 205 41 282 29 0 0 chr1 152103863 152103898 -90560455 + (TG)n Simple_repeat Simple_repeat 2 36 0 962 194 71 82 chr1 152104093 152104433 -90559920 + L1MB8 LINE L1 3397 3732 -2414 2441 237 23 13 chr1 152104434 152105118 -90559235 + L1MB8 LINE L1 4043 4733 -1413 14781 189 29 34 chr1 152105131 152105625 -90558728 - L1MA4 LINE L1 -3 6479 5984 360 0 0 0 chr1 152105625 152105665 -90558688 + (TG)n Simple_repeat Simple_repeat 2 41 0 14781 189 29 34 chr1 152105665 152106616 -90557737 - L1MA4 LINE L1 -498 5984 5029 2411 57 0 0 chr1 152106616 152106913 -90557440 + AluY SINE Alu 1 297 -14 14781 189 29 34 chr1 152106913 152108482 -90555871 - L1MA4 LINE L1 -1453 5029 3453 2075 118 0 3 chr1 152108482 152108769 -90555584 - AluSc SINE Alu -23 286 1 14781 189 29 34 chr1 152108769 152110224 -90554129 - L1MA4 LINE L1 -3029 3453 1992 2052 98 37 7 chr1 152110224 152110520 -90553833 + AluSq SINE Alu 1 305 -8 14781 189 29 34 chr1 152110520 152112567 -90551786 - L1MA4 LINE L1 -4490 1992 4 3213 195 72 45 chr1 152112581 152113263 -90551090 + L1MB8 LINE L1 4730 5392 -786 1691 141 14 41 chr1 152113263 152113407 -90550946 + AluSx SINE Alu 1 147 -165 2054 33 49 0 chr1 152113407 152113652 -90550701 + AluY SINE Alu 39 295 -16 1691 141 14 41 chr1 152113652 152113827 -90550526 + AluSx SINE Alu 147 312 0 3213 195 72 45 chr1 152113827 152114492 -90549861 + L1MB8 LINE L1 5392 6107 -71 2400 156 14 24 chr1 152114499 152115272 -90549081 - Ricksha DNA DNA -20 3231 2403 9856 149 29 8 chr1 152115300 152116906 -90547447 - Ricksha DNA DNA -966 2280 640 4213 260 83 27 chr1 152116907 152119847 -90544506 - L1 LINE L1 -2715 4452 1625 1307 314 41 16 chr1 152120123 152120610 -90543743 - L1 LINE L1 -6621 547 49 421 291 94 61 chr1 152122425 152123491 -90540862 + L1ME3A LINE L1 1105 2237 -4159 907 254 114 74 chr1 152123637 152125012 -90539341 + L1ME3A LINE L1 2218 3787 -2428 995 279 62 17 chr1 152125030 152125564 -90538789 + L1ME3A LINE L1 4147 4704 -1511 24 77 0 0 chr1 152125595 152125647 -90538706 + AT_rich Low_complexity Low_complexity 1 52 0 736 134 18 0 chr1 152125647 152125775 -90538578 + L1MB1 LINE L1 5782 5895 -273 446 265 74 21 chr1 152125908 152126097 -90538256 - LTR43 LTR ERV1 -247 355 157 1045 190 158 27 chr1 152126274 152126537 -90537816 + L1MB1 LINE L1 5885 6178 -11 962 176 73 10 chr1 152126681 152126885 -90537468 + U3 snRNA snRNA 1 217 0 939 240 131 73 chr1 152126885 152127169 -90537184 + L1ME3A LINE L1 5414 5680 -559 2240 110 21 42 chr1 152127169 152127552 -90536801 + THE1C LTR MaLR 1 375 0 939 240 131 73 chr1 152127552 152127841 -90536512 + L1ME3A LINE L1 5680 6020 -219 358 279 7 29 chr1 152127869 152128009 -90536344 + L1ME3A LINE L1 6098 6234 -5 21 36 0 0 chr1 152128033 152128061 -90536292 + AT_rich Low_complexity Low_complexity 1 28 0 361 336 51 14 chr1 152128159 152128376 -90535977 - L1ME4a LINE L1 -218 5903 5679 1064 184 133 106 chr1 152128868 152129229 -90535124 + MLT2D LTR ERVL 1 375 -39 189 0 0 0 chr1 152129229 152129250 -90535103 + (CATA)n Simple_repeat Simple_repeat 4 24 0 1064 184 133 106 chr1 152129250 152129285 -90535068 + MLT2D LTR ERVL 375 408 -6 545 163 10 0 chr1 152130020 152130118 -90534235 - MER53 DNA DNA 0 189 91 2311 176 134 2 chr1 152130374 152130829 -90533524 - MLT2B1 LTR ERVL 0 520 6 216 319 86 17 chr1 152131235 152131351 -90533002 + MIR SINE MIR 22 145 -63 22 56 0 0 chr1 152132072 152132108 -90532245 + AT_rich Low_complexity Low_complexity 1 36 0 197 427 77 0 chr1 152132142 152132259 -90532094 + MIR SINE MIR 16 141 -67 21 0 0 0 chr1 152132425 152132446 -90531907 + AT_rich Low_complexity Low_complexity 1 21 0 425 318 104 40 chr1 152133120 152133466 -90530887 + LTR67 LTR ERVL 184 551 -6 582 269 27 59 chr1 152133932 152134118 -90530235 - MER5A DNA MER1_type -1 188 9 509 360 159 20 chr1 152134117 152134285 -90530068 - L2 LINE L2 -1339 1975 1832 * 2498 41 0 31 chr1 152134285 152134602 -90529751 + AluY SINE Alu 1 307 -4 509 360 159 20 chr1 152134602 152135230 -90529123 - L2 LINE L2 -1482 1832 1068 246 283 175 8 chr1 152135961 152136081 -90528272 + L2 LINE L2 2755 2894 -420 286 211 60 82 chr1 152136142 152136307 -90528046 + MLT1J1 LTR MaLR 336 440 -6 490 278 59 11 chr1 152136314 152136501 -90527852 + L2 LINE L2 3116 3311 -2 2168 139 27 38 chr1 152236563 152236931 -90427422 + THE1B LTR MaLR 1 364 0 12078 85 4 6 chr1 152236931 152238252 -90426101 + THE1B-int LTR MaLR 1 1321 -259 8755 46 4 2 chr1 152238252 152239319 -90425034 + MER11C LTR ERVK 1 1069 -2 12078 85 4 6 chr1 152239319 152239579 -90424774 + THE1B-int LTR MaLR 1321 1580 0 1994 154 36 22 chr1 152239579 152239936 -90424417 + THE1B LTR MaLR 1 362 -2 283 309 15 70 chr1 152240011 152240212 -90424141 + L2 LINE L2 2193 2382 -932 522 325 118 57 chr1 152240294 152240921 -90423432 - L2 LINE L2 -786 2528 1864 249 222 0 0 chr1 152240929 152240983 -90423370 + (TA)n Simple_repeat Simple_repeat 2 55 0 195 42 0 0 chr1 152241070 152241094 -90423259 + (CA)n Simple_repeat Simple_repeat 2 25 0 403 311 45 54 chr1 152241161 152241499 -90422854 - L1MDa LINE L1 -3755 2460 2127 1803 230 38 38 chr1 152241543 152242048 -90422305 - MLT1D LTR MaLR 0 505 1 2106 120 19 13 chr1 152242255 152242564 -90421789 - AluSx SINE Alu -1 311 1 469 299 90 47 chr1 152242702 152243147 -90421206 - HAL1b LINE L1 -733 615 152 1036 248 111 15 chr1 152243676 152244224 -90420129 - L1MDa LINE L1 -4934 1462 862 1016 173 0 0 chr1 152244249 152244405 -90419948 + AluJb SINE Alu 134 289 -23 991 310 47 45 chr1 152244494 152245068 -90419285 - L1MDa LINE L1 -5708 688 114 1897 261 107 12 chr1 152245799 152246369 -90417984 + MLT1E3 LTR MaLR 1 624 0 180 0 0 0 chr1 152246593 152246613 -90417740 + (TA)n Simple_repeat Simple_repeat 2 21 0 6911 16 0 0 chr1 152248169 152248955 -90415398 + L1PA3 LINE L1 5367 6152 -3 201 59 29 0 chr1 152249237 152249271 -90415082 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 537 120 27 0 chr1 152249271 152249346 -90415007 - AluSg/x SINE Alu -29 280 204 23 0 0 0 chr1 152249625 152249648 -90414705 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 152249727 152249748 -90414605 + AT_rich Low_complexity Low_complexity 1 21 0 1159 204 21 18 chr1 152249909 152250193 -90414160 + L1 LINE L1 2 286 -6744 2590 243 68 56 chr1 152250193 152251433 -90412920 + L1 LINE L1 1182 2110 -4996 417 86 0 0 chr1 152251433 152251491 -90412862 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2590 243 68 56 chr1 152251491 152252676 -90411677 + L1 LINE L1 2110 3280 -3826 1327 229 46 5 chr1 152252677 152253110 -90411243 + L1 LINE L1 3667 4117 -2989 * 4100 161 63 2 chr1 152253079 152253970 -90410383 + L1 LINE L1 5438 6382 -743 24 0 0 0 chr1 152254114 152254138 -90410215 + AT_rich Low_complexity Low_complexity 1 24 0 427 298 50 53 chr1 152254145 152254325 -90410028 - HAL1 LINE L1 -1385 1122 942 2181 257 21 35 chr1 152254325 152254956 -90409397 + MLT1E3 LTR MaLR 3 624 0 427 298 50 53 chr1 152254956 152255117 -90409236 - HAL1 LINE L1 -1565 942 782 344 382 19 24 chr1 152255165 152255377 -90408976 - HAL1 LINE L1 -1866 641 431 262 287 56 77 chr1 152255528 152255723 -90408630 - HAL1 LINE L1 -2315 192 2 21 0 0 0 chr1 152255730 152255751 -90408602 + AT_rich Low_complexity Low_complexity 1 21 0 385 273 93 16 chr1 152255905 152256099 -90408254 - L1M4 LINE L1 -2427 3719 3511 4386 121 37 41 chr1 152256111 152257915 -90406438 - SVA Other Other -518 1170 1 1309 280 59 36 chr1 152258043 152259146 -90405207 - L1M4 LINE L1 -2667 3479 2352 2505 192 24 35 chr1 152259589 152260136 -90404217 + MER67A LTR ERV1 1 541 -2 758 298 72 39 chr1 152260251 152260640 -90403713 + L2 LINE L2 1814 2215 -1099 796 311 26 43 chr1 152260641 152260991 -90403362 + L2 LINE L2 2442 2785 -529 419 263 5 81 chr1 152261070 152261268 -90403085 - MLT1J LTR MaLR -71 440 258 225 222 28 28 chr1 152261469 152261541 -90402812 - MLT1L LTR MaLR -543 72 1 198 71 0 0 chr1 152264199 152264227 -90400126 + (TG)n Simple_repeat Simple_repeat 2 29 0 398 292 125 33 chr1 152264903 152265208 -90399145 + MARNA DNA Mariner 136 468 -118 349 353 113 13 chr1 152266165 152266403 -90397950 + L3 LINE CR1 188 449 -1128 257 292 223 15 chr1 152266556 152266758 -90397595 + L3 LINE CR1 426 669 -908 561 254 0 0 chr1 152267558 152267688 -90396665 + MER94 DNA DNA 5 134 0 548 145 0 0 chr1 152267822 152267905 -90396448 + 5S rRNA rRNA 7 89 -32 625 321 21 53 chr1 152268477 152268854 -90395499 + MLT1J LTR MaLR 3 367 -144 199 219 0 0 chr1 152270065 152270106 -90394247 + L2 LINE L2 3231 3271 -1 21517 147 20 27 chr1 152270283 152273801 -90390552 + L1MA3 LINE L1 17 3557 -4167 2109 129 3 13 chr1 152273801 152274111 -90390242 + AluSq SINE Alu 7 313 0 21517 147 20 27 chr1 152274111 152275072 -90389281 + L1MA3 LINE L1 3557 4523 -3201 1631 174 80 3 chr1 152275072 152275360 -90388993 + AluSx SINE Alu 3 312 0 21517 147 20 27 chr1 152275360 152275487 -90388866 + L1MA3 LINE L1 4523 4649 -3075 1541 59 5 27 chr1 152275487 152275707 -90388646 - L1PA4 LINE L1 0 6155 5941 21517 147 20 27 chr1 152275707 152277786 -90386567 + L1MA3 LINE L1 4649 6741 -983 1750 165 26 16 chr1 152277786 152278095 -90386258 + AluSx SINE Alu 1 312 0 21517 147 20 27 chr1 152278095 152278150 -90386203 + L1MA3 LINE L1 6741 6795 -929 2399 68 7 0 chr1 152278150 152278444 -90385909 - AluY SINE Alu -15 296 1 21517 147 20 27 chr1 152278444 152279449 -90384904 + L1MA3 LINE L1 6795 7723 -1 1832 141 171 8 chr1 152279626 152279994 -90384359 + MSTA LTR MaLR 1 428 0 189 194 60 90 chr1 152282994 152283061 -90381292 + L3 LINE CR1 1509 1573 -4 264 30 0 0 chr1 152283231 152283264 -90381089 + (TG)n Simple_repeat Simple_repeat 2 34 0 3863 174 44 30 chr1 152283682 152284755 -90379598 - L1MB8 LINE L1 -1 6177 5094 2093 127 14 109 chr1 152285065 152285615 -90378738 - L1MA5 LINE L1 -1454 4692 4195 5593 148 38 11 chr1 152285615 152286223 -90378130 + L1MA5 LINE L1 4678 5268 -1032 315 0 0 0 chr1 152286223 152286258 -90378095 + (CA)n Simple_repeat Simple_repeat 2 36 0 5593 148 38 11 chr1 152286258 152287223 -90377130 + L1MA5 LINE L1 5268 6278 -22 24 0 0 0 chr1 152287226 152287250 -90377103 + AT_rich Low_complexity Low_complexity 1 24 0 367 282 65 18 chr1 152287447 152287617 -90376736 + L1M3e LINE L1 1592 1769 -5261 255 294 12 0 chr1 152287618 152287703 -90376650 + CT-rich Low_complexity Low_complexity 3 88 0 1195 154 20 16 chr1 152288871 152289117 -90375236 - L1MA9 LINE L1 -30 6282 6036 1283 178 30 9 chr1 152289131 152289362 -90374991 - MER46A DNA MER2_type 0 236 1 705 184 0 0 chr1 152289362 152289498 -90374855 + L1MA9 LINE L1 5784 5919 -393 189 341 68 11 chr1 152291795 152291883 -90372470 - L2 LINE L2 -43 3229 3137 786 255 51 43 chr1 152291903 152292158 -90372195 - MIR SINE MIR 0 262 6 201 352 93 63 chr1 152292161 152292431 -90371922 - L2 LINE L2 -185 3087 2810 458 306 24 0 chr1 152292691 152292815 -90371538 - L2 LINE L2 -3 3269 3143 834 259 14 9 chr1 152292905 152293125 -90371228 + MIR SINE MIR 2 222 -40 180 0 0 0 chr1 152293771 152293791 -90370562 + (T)n Simple_repeat Simple_repeat 1 20 0 234 333 37 0 chr1 152294071 152294152 -90370201 - L2 LINE L2 -236 3036 2953 2396 217 34 97 chr1 152294161 152294926 -90369427 - MER21B LTR ERV1 -146 717 1 396 242 81 0 chr1 152295033 152295132 -90369221 - MIR SINE MIR 0 262 156 622 203 47 8 chr1 152295173 152295301 -90369052 + MIR SINE MIR 32 164 -98 675 251 10 44 chr1 152296156 152296359 -90367994 + MIR SINE MIR 20 215 -47 202 238 0 0 chr1 152296389 152296431 -90367922 - L2 LINE L2 -1 3312 3271 227 317 0 0 chr1 152296520 152296580 -90367773 - L3b LINE CR1 -69 1514 1455 206 314 128 12 chr1 152296705 152296791 -90367562 - MIR3 SINE MIR -19 189 94 1793 88 8 19 chr1 152297275 152297328 -90367025 + L1PA10 LINE L1 5909 5961 -207 1669 161 78 12 chr1 152297328 152297650 -90366703 + MER61A LTR ERV1 1 343 0 1793 88 8 19 chr1 152297650 152297859 -90366494 + L1PA10 LINE L1 5961 6168 0 425 330 149 0 chr1 152298089 152298310 -90366043 + MIR SINE MIR 9 262 0 2197 99 72 9 chr1 152299250 152299584 -90364769 - THE1A LTR MaLR 0 355 1 1653 161 0 0 chr1 152299773 152300033 -90364320 - AluJb SINE Alu -52 260 1 202 318 16 0 chr1 152300047 152300110 -90364243 - L2 LINE L2 -700 2614 2551 204 248 83 76 chr1 152300198 152300343 -90364010 - L2 LINE L2 -940 2374 2229 279 221 114 69 chr1 152300430 152300561 -90363792 - MIR SINE MIR -1 261 125 359 338 44 44 chr1 152300662 152300866 -90363487 + MIR SINE MIR 45 248 -14 417 298 158 38 chr1 152301397 152301689 -90362664 + L1MEd LINE L1 698 1024 -5095 22 0 0 0 chr1 152301703 152301725 -90362628 + AT_rich Low_complexity Low_complexity 1 22 0 3648 114 49 30 chr1 152301727 152302018 -90362335 - Tigger3(Golem) DNA MER2_type 0 3028 2744 2363 85 3 0 chr1 152302018 152302325 -90362028 - AluSp SINE Alu -4 309 2 3648 114 49 30 chr1 152302325 152302666 -90361687 - Tigger3(Golem) DNA MER2_type -284 2744 2384 4945 62 11 6 chr1 152302666 152303661 -90360692 - SVA Other Other -954 1386 62 244 327 60 7 chr1 152303966 152304116 -90360237 - L1MEc LINE L1 -4892 1313 1156 26 30 0 0 chr1 152304237 152304270 -90360083 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr1 152304570 152304598 -90359755 + (T)n Simple_repeat Simple_repeat 1 28 0 2392 53 7 3 chr1 152304657 152304958 -90359395 - AluY SINE Alu -7 304 3 4164 238 38 30 chr1 152305494 152307668 -90356685 - L1ME1 LINE L1 -5 6230 4039 3598 140 37 12 chr1 152307668 152308317 -90356036 - L1MA3 LINE L1 0 6305 5641 4164 238 38 30 chr1 152308317 152308399 -90355954 - L1ME1 LINE L1 -2196 4039 3959 305 260 0 73 chr1 152308399 152308591 -90355762 + (CATA)n Simple_repeat Simple_repeat 2 179 0 * 427 239 48 24 chr1 152308478 152308645 -90355708 + (CATG)n Simple_repeat Simple_repeat 4 174 0 425 241 0 63 chr1 152308569 152308760 -90355593 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 * 2067 247 47 17 chr1 152308761 152309543 -90354810 - L1ME1 LINE L1 -2277 3938 3133 3441 251 74 51 chr1 152309566 152310209 -90354144 - L1ME1 LINE L1 -3623 2592 1966 2113 93 36 0 chr1 152310209 152310488 -90353865 + AluSg SINE Alu 1 289 -21 3441 251 74 51 chr1 152310488 152311694 -90352659 - L1ME1 LINE L1 -4249 1966 739 484 287 18 30 chr1 152311700 152311867 -90352486 - L1ME1 LINE L1 -5780 616 452 431 195 81 49 chr1 152311864 152311987 -90352366 - L1ME1 LINE L1 -6234 162 36 * 3193 279 35 24 chr1 152312006 152313137 -90351216 - L1MEc LINE L1 -5219 1177 35 909 233 53 34 chr1 152313607 152313869 -90350484 - MLT1C LTR MaLR 0 467 201 660 267 124 22 chr1 152314025 152314250 -90350103 + MIR SINE MIR 15 262 0 501 259 42 42 chr1 152314278 152314467 -90349886 - L1MEc LINE L1 -6173 223 35 2032 292 122 67 chr1 152314813 152316148 -90348205 - L2 LINE L2 -725 2589 1159 219 114 0 0 chr1 152316148 152316183 -90348170 + (TG)n Simple_repeat Simple_repeat 1 35 0 2032 292 122 67 chr1 152316183 152316368 -90347985 - L2 LINE L2 -2155 1159 986 243 346 39 0 chr1 152316887 152316965 -90347388 + MIR3 SINE MIR 113 193 -15 213 108 0 0 chr1 152317298 152317335 -90347018 + (TG)n Simple_repeat Simple_repeat 2 38 0 359 291 86 13 chr1 152317415 152317566 -90346787 - MIR3 SINE MIR -28 180 19 230 271 103 37 chr1 152318681 152318788 -90345565 - MIR3 SINE MIR -1 207 94 2062 73 106 0 chr1 152319113 152319414 -90344939 - L1PA13 LINE L1 0 6163 5831 213 328 23 82 chr1 152319578 152319749 -90344604 + MER5A DNA MER1_type 1 161 -28 309 287 299 6 chr1 152319772 152319929 -90344424 - MIR SINE MIR 0 262 60 * 343 339 138 11 chr1 152319924 152320098 -90344255 + MIR SINE MIR 48 243 -19 1684 295 96 38 chr1 152322351 152324700 -90339653 - L1ME3A LINE L1 -219 5951 3465 2061 116 27 3 chr1 152324930 152325224 -90339129 + AluSx SINE Alu 1 301 -11 257 234 41 109 chr1 152325378 152325698 -90338655 - L1ME3A LINE L1 -2769 3377 3080 1330 169 0 19 chr1 152325700 152325913 -90338440 - AluJo SINE Alu -19 293 85 28 29 0 0 chr1 152325945 152325980 -90338373 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr1 152326182 152326208 -90338145 + AT_rich Low_complexity Low_complexity 1 26 0 330 153 0 0 chr1 152326675 152326734 -90337619 + A-rich Low_complexity Low_complexity 1 59 0 334 284 0 12 chr1 152327174 152327255 -90337098 + L2 LINE L2 3190 3269 -44 538 275 130 15 chr1 152327334 152327534 -90336819 + MIR SINE MIR 28 250 -12 420 319 206 28 chr1 152328996 152329432 -90334921 + MLT1H LTR MaLR 22 535 -14 279 334 186 29 chr1 152329503 152329847 -90334506 + L3 LINE CR1 253 650 -927 184 311 0 0 chr1 152329829 152329874 -90334479 - L3 LINE CR1 -456 1121 1077 * 203 239 0 0 chr1 152329963 152330009 -90334344 + MIR3 SINE MIR 158 203 -5 368 210 6 160 chr1 152330235 152330416 -90333937 - MIR SINE MIR -70 192 40 239 216 20 0 chr1 152331423 152331474 -90332879 - L2 LINE L2 0 3272 3221 304 320 107 8 chr1 152331499 152331621 -90332732 + MER5A DNA MER1_type 56 189 0 185 156 0 44 chr1 152331697 152331717 -90332636 + (TAA)n Simple_repeat Simple_repeat 3 22 -23 2391 64 0 7 chr1 152331717 152332012 -90332341 + AluY SINE Alu 3 295 -16 185 156 0 44 chr1 152332012 152332036 -90332317 + (TAA)n Simple_repeat Simple_repeat 22 45 0 183 243 54 95 chr1 152332056 152332130 -90332223 - MIR3 SINE MIR -6 202 132 757 278 145 7 chr1 152332292 152332722 -90331631 + L1PA14 LINE L1 5354 5835 -326 257 377 30 0 chr1 152333128 152333248 -90331105 - MIR SINE MIR -64 144 43 230 365 0 14 chr1 152334017 152334091 -90330262 - MIR SINE MIR -184 78 6 474 205 0 43 chr1 152334231 152334348 -90330005 + MLT2B1 LTR ERVL 1 112 -408 555 16 0 0 chr1 152334348 152334412 -90329941 + (TATTG)n Simple_repeat Simple_repeat 2 65 0 1217 174 117 24 chr1 152334416 152334663 -90329690 - AluJb SINE Alu -28 284 15 1351 208 147 32 chr1 152334672 152335047 -90329306 + MLT2B1 LTR ERVL 103 520 0 735 250 49 5 chr1 152335062 152335246 -90329107 + MIR SINE MIR 71 262 0 2291 91 7 3 chr1 152335378 152335687 -90328666 + AluSp SINE Alu 1 310 -3 445 194 18 165 chr1 152335791 152335961 -90328392 - MER91B DNA MER1_type -8 182 38 1582 170 24 14 chr1 152338222 152338511 -90325842 + AluJo SINE Alu 11 302 -10 253 186 23 12 chr1 152341014 152341100 -90323253 - L1ME4a LINE L1 -2 6119 6033 1026 212 78 65 chr1 152341105 152341549 -90322804 - MSTD LTR MaLR -2 455 4 470 138 92 35 chr1 152341604 152341691 -90322662 - AluJ SINE Alu -29 283 192 * 554 154 0 0 chr1 152341683 152341774 -90322579 - AluJ SINE Alu -201 111 21 832 298 40 8 chr1 152341914 152342162 -90322191 - MIR SINE MIR 0 262 7 192 40 0 0 chr1 152342895 152342920 -90321433 + (GA)n Simple_repeat Simple_repeat 2 26 0 412 260 114 72 chr1 152343418 152343875 -90320478 - MARNA DNA Mariner -43 543 68 1559 237 63 39 chr1 152344032 152344525 -90319828 - MLT1D LTR MaLR 0 505 1 237 332 80 53 chr1 152344692 152344879 -90319474 + L3 LINE CR1 1320 1511 -66 290 325 18 0 chr1 152345804 152345918 -90318435 + L2 LINE L2 1772 1887 -1427 555 29 0 0 chr1 152346478 152346547 -90317806 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 731 281 36 0 chr1 152346549 152346770 -90317583 + MER112 DNA MER1_type 32 260 0 4418 180 53 12 chr1 152346784 152346932 -90317421 - L1MA9 LINE L1 -3 6309 6169 192 77 0 0 chr1 152346932 152346958 -90317395 + (TATG)n Simple_repeat Simple_repeat 1 26 0 4418 180 53 12 chr1 152346958 152347753 -90316600 - L1MA9 LINE L1 -143 6169 5327 2474 98 131 2 chr1 152347753 152348150 -90316203 + LTR7 LTR ERV1 1 448 -2 13672 119 12 27 chr1 152348152 152350704 -90313649 + HERVH LTR ERV1 1 2828 -4885 2457 140 0 5 chr1 152350702 152351087 -90313266 + HERVH LTR ERV1 3354 3736 -3977 * 6189 125 2 2 chr1 152351080 152352065 -90312288 + HERVH LTR ERV1 3962 4949 -2378 2489 93 5 13 chr1 152352167 152352554 -90311799 + HERVH LTR ERV1 7330 7713 0 2564 93 134 2 chr1 152352554 152352950 -90311403 + LTR7 LTR ERV1 1 448 -2 346 87 0 0 chr1 152352973 152353019 -90311334 - MER4E-int LTR ERV1 -6712 46 1 2620 121 31 13 chr1 152353024 152353602 -90310751 - MER4E LTR ERV1 -5 774 1 3145 193 20 7 chr1 152353604 152354347 -90310006 - L1MA9 LINE L1 -1044 5102 4350 341 204 0 4 chr1 152354412 152354492 -90309861 + MLT2B2 LTR ERVL 1 78 -336 216 0 0 0 chr1 152354522 152354546 -90309807 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 793 143 43 0 chr1 152354546 152354686 -90309667 - L1MA5A LINE L1 -8 6289 6144 7251 228 36 16 chr1 152354686 152354895 -90309458 + ERVL-B1 LTR ERVL 23 226 -5538 3695 204 27 1 chr1 152354895 152355610 -90308743 - MER44D DNA MER2_type 0 605 1 7251 228 36 16 chr1 152355610 152357140 -90307213 + ERVL-B1 LTR ERVL 226 1798 -3966 730 187 0 0 chr1 152357153 152357292 -90307061 + ERVL-B1 LTR ERVL 5617 5755 -9 1993 208 46 50 chr1 152357294 152357813 -90306540 + MLT2B1 LTR ERVL 1 517 -3 189 242 0 0 chr1 152358015 152358048 -90306305 + MIR SINE MIR 42 74 -134 181 204 140 108 chr1 152358231 152358324 -90306029 + MIR SINE MIR 8 103 -159 1206 184 56 37 chr1 152358526 152358901 -90305452 - Charlie5 DNA MER1_type 0 2624 2243 436 214 0 0 chr1 152358921 152359019 -90305334 - Charlie5 DNA MER1_type -2510 102 5 255 305 12 0 chr1 152359730 152359812 -90304541 - MIR3 SINE MIR -5 203 121 639 183 75 71 chr1 152360073 152360341 -90304012 + MER33 DNA MER1_type 45 313 -11 217 288 27 14 chr1 152361928 152362001 -90302352 - MIR SINE MIR -11 251 178 2754 265 138 6 chr1 152362199 152363221 -90301132 - MER69B DNA AcHobo 0 1226 70 283 191 52 52 chr1 152363555 152363728 -90300625 + (TTATA)n Simple_repeat Simple_repeat 4 176 0 187 174 43 43 chr1 152364889 152364935 -90299418 - MIR SINE MIR -72 190 145 378 302 60 0 chr1 152365128 152365244 -90299109 - L2 LINE L2 0 3313 3191 756 309 25 16 chr1 152365812 152366055 -90298298 - MIR SINE MIR -3 259 15 209 325 138 56 chr1 152368030 152368190 -90296163 - L2 LINE L2 0 3272 3100 21 0 0 0 chr1 152369160 152369181 -90295172 + AT_rich Low_complexity Low_complexity 1 21 0 348 24 0 0 chr1 152369831 152369872 -90294481 + (TG)n Simple_repeat Simple_repeat 2 42 0 751 289 14 19 chr1 152370066 152370274 -90294079 - MIR3 SINE MIR 0 208 2 260 346 9 23 chr1 152370544 152370681 -90293672 - MIR SINE MIR -62 146 50 225 0 0 0 chr1 152371180 152371205 -90293148 + (A)n Simple_repeat Simple_repeat 1 25 0 193 257 104 69 chr1 152371827 152371971 -90292382 + MIR SINE MIR 100 248 -14 1080 156 8 38 chr1 152373016 152373253 -90291100 + L1MA6 LINE L1 6068 6297 -3 21 57 0 0 chr1 152373378 152373413 -90290940 + AT_rich Low_complexity Low_complexity 1 35 0 3986 269 118 37 chr1 152373430 152375276 -90289077 - L2 LINE L2 0 3313 1225 180 0 0 0 chr1 152375279 152375299 -90289054 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 14083 174 30 7 chr1 152375299 152377568 -90286785 - L1PB1 LINE L1 -6 6861 4645 2151 127 0 3 chr1 152377568 152377859 -90286494 + AluSg SINE Alu 1 290 -20 14083 174 30 7 chr1 152377859 152381520 -90282833 - L1PB1 LINE L1 -2222 4645 636 1046 176 5 0 chr1 152381522 152381721 -90282632 - L1PB1 LINE L1 -6663 200 1 572 313 14 28 chr1 152381758 152381975 -90282378 - L2 LINE L2 -2123 1191 978 194 328 0 0 chr1 152383534 152383592 -90280761 + MIR SINE MIR 58 115 -93 621 257 44 0 chr1 152384262 152384445 -90279908 - LTR33 LTR ERVL -27 494 304 762 198 0 0 chr1 152384647 152384809 -90279544 + CT-rich Low_complexity Low_complexity 2 163 0 3475 176 16 47 chr1 152384853 152385642 -90278711 - L1MC3 LINE L1 -12 7773 7009 3676 198 45 2 chr1 152385644 152386461 -90277892 - L1MC3 LINE L1 -1022 6763 5912 * 4200 235 47 28 chr1 152386449 152386644 -90277709 - L1PA15-16 LINE L1 -2728 4121 3931 1991 124 20 3 chr1 152386644 152386942 -90277411 - AluSx SINE Alu -7 305 3 4200 235 47 28 chr1 152386942 152387237 -90277116 - L1PA15-16 LINE L1 -2918 3931 3643 2368 86 3 0 chr1 152387237 152387528 -90276825 - AluSp SINE Alu -21 292 1 4200 235 47 28 chr1 152387528 152388944 -90275409 - L1PA15-16 LINE L1 -3206 3643 2197 240 111 0 0 chr1 152388944 152388989 -90275364 + (TA)n Simple_repeat Simple_repeat 1 45 0 4200 235 47 28 chr1 152388989 152390029 -90274324 - L1PA15-16 LINE L1 -4652 2197 1178 989 296 45 56 chr1 152390230 152390856 -90273497 - L1PA15-16 LINE L1 -6229 620 2 2101 241 58 3 chr1 152390861 152391549 -90272804 - L1MCa LINE L1 -3103 3323 2598 21 0 0 0 chr1 152391565 152391586 -90272767 + AT_rich Low_complexity Low_complexity 1 21 0 1810 185 20 30 chr1 152391590 152391944 -90272409 - L1MB3 LINE L1 -54 6129 5778 474 18 0 0 chr1 152391944 152391999 -90272354 + (TA)n Simple_repeat Simple_repeat 1 55 0 1810 185 20 30 chr1 152391999 152392050 -90272303 - L1MB3 LINE L1 -405 5778 5728 1253 223 96 0 chr1 152392049 152392493 -90271860 - L1MCa LINE L1 -3947 2479 2075 * 2032 141 26 45 chr1 152393383 152393765 -90270588 + THE1C LTR MaLR 1 375 0 370 292 168 38 chr1 152393915 152394254 -90270099 + L2 LINE L2 1934 2316 -998 2192 125 7 0 chr1 152394268 152394571 -90269782 + AluSg SINE Alu 1 305 -5 400 290 0 0 chr1 152394650 152394795 -90269558 - L1M4 LINE L1 -979 5167 5023 315 335 161 19 chr1 152394812 152394967 -90269386 + MER5A DNA MER1_type 13 189 0 5743 161 7 4 chr1 152395077 152396089 -90268264 - L1MC1 LINE L1 0 6333 5319 * 40655 31 22 1 chr1 152396085 152402138 -90262215 - L1PA2 LINE L1 0 6155 3 1629 236 15 25 chr1 152402136 152402906 -90261447 - L1MC1 LINE L1 -820 5326 4448 * 262 329 146 22 chr1 152402948 152403263 -90261090 + L2 LINE L2 2671 3078 -194 574 236 0 0 chr1 152403898 152404008 -90260345 + MLT1A1 LTR MaLR 1 110 -255 420 148 148 34 chr1 152404006 152404094 -90260259 + MLT1A1 LTR MaLR 271 368 -6 * 503 349 8 0 chr1 152404531 152404663 -90259690 - L2 LINE L2 -6 3266 3134 1494 178 63 66 chr1 152404710 152404765 -90259588 - MLT1B LTR MaLR -1 389 335 3466 137 8 9 chr1 152404765 152405292 -90259061 + MER1A DNA MER1_type 2 527 0 1494 178 63 66 chr1 152405292 152405675 -90258678 - MLT1B LTR MaLR -55 335 1 1475 179 60 3 chr1 152405715 152406062 -90258291 - Charlie5 DNA MER1_type -11 2601 2235 614 158 8 53 chr1 152406060 152406167 -90258186 - Charlie5 DNA MER1_type -2497 127 26 * 1324 190 10 111 chr1 152406167 152406573 -90257780 - MLT1A1 LTR MaLR 0 365 1 614 158 8 53 chr1 152406573 152406598 -90257755 - Charlie5 DNA MER1_type -2598 26 1 427 320 50 6 chr1 152407539 152407720 -90256633 - L2 LINE L2 -41 3272 3084 292 267 35 95 chr1 152407728 152407844 -90256509 - L2 LINE L2 -1 3271 3163 345 292 97 9 chr1 152408073 152408247 -90256106 + MIR3 SINE MIR 2 190 -63 818 230 146 9 chr1 152409329 152409555 -90254798 + AluSg1 SINE Alu 36 292 -17 418 322 44 19 chr1 152410736 152410941 -90253412 - MIR SINE MIR -40 222 13 454 247 21 0 chr1 152411073 152411170 -90253183 + MER5A DNA MER1_type 9 107 -82 200 227 0 0 chr1 152412446 152412490 -90251863 + T-rich Low_complexity Low_complexity 1 44 0 255 333 59 0 chr1 152414168 152414270 -90250083 + L3 LINE CR1 1380 1487 -90 198 0 0 0 chr1 152414442 152414464 -90249889 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 950 226 74 65 chr1 152415749 152415896 -90248457 - MER2 DNA MER2_type 0 345 201 3950 81 14 4 chr1 152415896 152416454 -90247899 - L1MA1 LINE L1 0 6302 5739 950 226 74 65 chr1 152416454 152416643 -90247710 - MER2 DNA MER2_type -144 201 6 517 319 72 14 chr1 152416666 152416894 -90247459 - MIR SINE MIR -24 238 5 28 48 0 0 chr1 152417471 152417513 -90246840 + AT_rich Low_complexity Low_complexity 1 42 0 207 213 16 33 chr1 152418147 152418208 -90246145 - MIR SINE MIR -92 170 111 250 211 0 39 chr1 152418240 152418292 -90246061 - L2 LINE L2 -54 3259 3210 2464 80 0 6 chr1 152418292 152418603 -90245750 + AluY SINE Alu 1 309 -2 21 36 0 0 chr1 152418768 152418796 -90245557 + AT_rich Low_complexity Low_complexity 1 28 0 403 280 129 0 chr1 152419037 152419169 -90245184 - MER5B DNA MER1_type 0 178 30 774 291 159 33 chr1 152419208 152419750 -90244603 + MLT1L LTR MaLR 6 615 0 345 307 0 0 chr1 152420372 152420473 -90243880 - MIR SINE MIR 0 262 162 233 333 7 82 chr1 152420739 152420874 -90243479 - L2 LINE L2 -4 3268 3144 667 227 0 43 chr1 152421553 152421716 -90242637 + MER20 DNA MER1_type 1 156 -63 291 264 57 36 chr1 152421966 152422106 -90242247 - MIR3 SINE MIR -1 207 65 195 100 0 0 chr1 152422406 152422436 -90241917 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1240 301 120 50 chr1 152422594 152423343 -90241010 + L2 LINE L2 2350 3045 -227 333 0 0 0 chr1 152423343 152423380 -90240973 + (TG)n Simple_repeat Simple_repeat 1 37 0 234 0 0 0 chr1 152423379 152423405 -90240948 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1240 301 120 50 chr1 152423380 152423514 -90240839 + L2 LINE L2 3045 3272 0 328 339 106 33 chr1 152423837 152424197 -90240156 - L3 LINE CR1 -868 709 324 332 328 0 80 chr1 152424571 152424624 -90239729 + MIR3 SINE MIR 45 101 -107 1145 231 9 0 chr1 152424624 152424845 -90239508 - MER58A DNA MER1_type 0 224 2 332 328 0 80 chr1 152424845 152424916 -90239437 + MIR3 SINE MIR 101 159 -49 318 296 165 6 chr1 152425866 152426042 -90238311 - MIR SINE MIR -44 218 15 183 283 0 94 chr1 152427533 152427639 -90236714 - MIR SINE MIR -56 206 111 2689 148 78 68 chr1 152427975 152428581 -90235772 - LTR9 LTR ERV1 0 612 1 396 329 64 7 chr1 152428858 152428998 -90235355 + L2 LINE L2 3116 3263 -9 212 286 295 0 chr1 152429005 152429117 -90235236 - L2 LINE L2 -12 3260 3116 201 231 0 0 chr1 152429797 152429836 -90234517 + CT-rich Low_complexity Low_complexity 1 39 0 285 222 42 0 chr1 152430667 152430739 -90233614 - MER116 DNA Mariner -5 75 1 865 156 19 0 chr1 152431080 152431234 -90233119 - L1MC3 LINE L1 -207 7578 7422 291 337 78 24 chr1 152431985 152432151 -90232202 + L2 LINE L2 2501 2675 -639 629 301 47 14 chr1 152432276 152432489 -90231864 + MIR SINE MIR 43 262 0 227 334 54 54 chr1 152432785 152432909 -90231444 - MIR SINE MIR -82 126 3 2207 103 3 0 chr1 152433645 152433936 -90230417 - AluSc SINE Alu -17 292 1 182 293 57 93 chr1 152434279 152434419 -90229934 + MIR SINE MIR 65 199 -63 704 334 108 41 chr1 152435372 152437127 -90227226 + L1MC2 LINE L1 2222 4098 -2284 440 309 60 25 chr1 152437130 152437563 -90226790 + L1MC2 LINE L1 4115 4562 -1820 * 662 205 13 1 chr1 152437554 152437722 -90226631 + L1M3 LINE L1 3841 4009 -2137 791 221 114 129 chr1 152437722 152438232 -90226121 + LTR28 LTR ERV1 1 1305 -450 5143 210 50 14 chr1 152438270 152439694 -90224659 + L1M3 LINE L1 4006 5489 -682 195 42 0 0 chr1 152439694 152439718 -90224635 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5143 210 50 14 chr1 152439718 152439756 -90224597 + L1M3 LINE L1 5489 5524 -647 330 304 123 10 chr1 152439802 152440006 -90224347 + L1MC2 LINE L1 4966 5192 -1190 532 253 80 80 chr1 152440145 152440497 -90223856 + L1MC4 LINE L1 6716 7067 -975 610 303 107 30 chr1 152440500 152440800 -90223553 + L2 LINE L2 2636 2958 -356 424 304 48 19 chr1 152440775 152440982 -90223371 + L2 LINE L2 3101 3313 0 * 485 314 41 12 chr1 152441201 152441373 -90222980 - MIR3 SINE MIR -11 197 21 439 248 28 0 chr1 152442449 152442558 -90221795 + MER5A DNA MER1_type 1 112 -77 256 299 0 0 chr1 152442818 152442885 -90221468 + GA-rich Low_complexity Low_complexity 2 68 0 351 308 75 14 chr1 152443177 152443323 -90221030 + MLT1I LTR MaLR 237 391 -18 237 65 0 0 chr1 152444645 152444676 -90219677 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 203 304 62 54 chr1 152445251 152445363 -90218990 - L2 LINE L2 -24 3248 3136 4726 189 38 20 chr1 152445492 152446509 -90217844 + L1MC2 LINE L1 5529 6566 -14 2395 86 0 0 chr1 152446509 152446812 -90217541 - AluY SINE Alu -8 303 1 4726 189 38 20 chr1 152446812 152446827 -90217526 + L1MC2 LINE L1 6566 6579 -1 251 338 152 7 chr1 152447039 152447190 -90217163 + MIR SINE MIR 34 206 -56 305 290 32 24 chr1 152447875 152447999 -90216354 - MIR SINE MIR -55 207 83 214 372 44 51 chr1 152448200 152448337 -90216016 - L2 LINE L2 -5 3267 3132 1112 264 113 41 chr1 152448351 152449088 -90215265 - LTR1B LTR ERV1 0 785 25 325 306 217 6 chr1 152449138 152449295 -90215058 + L1MC4a LINE L1 5989 6178 -1630 930 218 90 113 chr1 152450694 152451220 -90213133 + MLT1D LTR MaLR 1 626 0 268 246 72 22 chr1 152451899 152452037 -90212316 - L1ME4a LINE L1 -1 6120 5976 219 383 102 8 chr1 152452889 152453017 -90211336 - L2 LINE L2 -18 3254 3115 1697 173 0 7 chr1 152453038 152453327 -90211026 - AluSx SINE Alu -15 297 11 1824 193 74 0 chr1 152453614 152453977 -90210376 - MLT1B LTR MaLR 0 390 1 253 290 99 23 chr1 152454340 152454471 -90209882 - MER5A DNA MER1_type 0 189 49 196 366 30 37 chr1 152454373 152454507 -90209846 + MER5A DNA MER1_type 54 186 -3 * 209 206 0 29 chr1 152454668 152454736 -90209617 + GA-rich Low_complexity Low_complexity 1 66 0 312 282 111 0 chr1 152454744 152454861 -90209492 - MLT1L LTR MaLR -353 262 133 775 277 23 31 chr1 152455051 152455307 -90209046 - MIR SINE MIR -3 259 6 21 0 0 0 chr1 152456151 152456172 -90208181 + AT_rich Low_complexity Low_complexity 1 21 0 196 307 93 13 chr1 152457149 152457224 -90207129 + L2 LINE L2 3173 3253 -19 302 347 57 23 chr1 152457452 152457628 -90206725 - L3 LINE CR1 -67 1510 1329 273 223 11 75 chr1 152459501 152459595 -90204758 - MIR SINE MIR -51 211 124 288 308 53 15 chr1 152460588 152460721 -90203632 + L2 LINE L2 2595 2732 -582 235 204 0 37 chr1 152460924 152460978 -90203375 + CT-rich Low_complexity Low_complexity 3 54 0 3773 189 40 52 chr1 152460997 152462125 -90202228 - L1MB8 LINE L1 -18 6160 5038 1519 175 13 38 chr1 152462125 152462439 -90201914 - AluJb SINE Alu -6 306 1 3773 189 40 52 chr1 152462439 152462485 -90201868 - L1MB8 LINE L1 -1140 5038 4993 5291 159 61 5 chr1 152462501 152463980 -90200373 - L1MA4 LINE L1 -8 6292 4735 1197 103 0 11 chr1 152463991 152464176 -90200177 - L1PA14 LINE L1 0 6161 5979 1910 146 146 8 chr1 152464340 152464716 -90199637 + MSTA LTR MaLR 1 428 0 1836 256 83 49 chr1 152464851 152466416 -90197937 - L1M4c LINE L1 -4437 2701 956 402 69 0 0 chr1 152466534 152466592 -90197761 + (TG)n Simple_repeat Simple_repeat 2 59 0 562 196 7 7 chr1 152466840 152466978 -90197375 + CT-rich Low_complexity Low_complexity 3 140 0 327 241 0 0 chr1 152466980 152467063 -90197290 + C-rich Low_complexity Low_complexity 4 86 0 546 269 52 31 chr1 152467398 152467591 -90196762 + MIR SINE MIR 11 207 -55 209 105 0 26 chr1 152467793 152467831 -90196522 + L2 LINE L2 3273 3309 -4 267 294 20 39 chr1 152468016 152468116 -90196237 + MIR SINE MIR 48 145 -63 211 357 18 62 chr1 152468116 152468228 -90196125 - MER5A DNA MER1_type -1 188 82 195 42 0 0 chr1 152468938 152468962 -90195391 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1585 171 29 4 chr1 152468965 152469245 -90195108 - AluSx SINE Alu -25 287 1 272 245 0 41 chr1 152469284 152469382 -90194971 - L1MC4 LINE L1 -1334 6708 6615 1187 220 79 26 chr1 152469388 152469729 -90194624 - L1ME1 LINE L1 -22 6144 5786 352 264 11 22 chr1 152469733 152469911 -90194442 + (TA)n Simple_repeat Simple_repeat 1 176 0 1562 241 49 66 chr1 152469912 152470933 -90193420 - L1M3 LINE L1 -381 5790 4790 307 261 57 0 chr1 152470968 152471056 -90193297 + L1MC4 LINE L1 6611 6703 -1339 252 185 0 0 chr1 152471059 152471113 -90193240 + (TA)n Simple_repeat Simple_repeat 1 54 0 229 278 22 22 chr1 152471119 152471209 -90193144 + L1MC4 LINE L1 6614 6703 -1339 2069 241 84 11 chr1 152471249 152471972 -90192381 - L1M3 LINE L1 -1346 4800 4025 624 304 116 20 chr1 152471973 152472411 -90191942 - L1M3 LINE L1 -2465 3681 3202 294 176 39 0 chr1 152472406 152472457 -90191896 - L1P LINE L1 -1215 4931 4879 * 2997 205 34 1 chr1 152472511 152472637 -90191716 - L1 LINE L1 -1269 4877 4757 639 39 0 0 chr1 152472637 152472715 -90191638 + (TATAG)n Simple_repeat Simple_repeat 5 82 0 2997 205 34 1 chr1 152472715 152473256 -90191097 - L1 LINE L1 -1389 4757 4188 * 5415 160 26 9 chr1 152473254 152474464 -90189889 + L1PA16 LINE L1 4926 6164 -2 722 266 55 22 chr1 152474458 152474770 -90189583 - L1M3 LINE L1 -2936 3210 2889 * 1332 276 73 29 chr1 152474770 152475834 -90188519 - L1MCc LINE L1 -4748 2193 1081 1055 265 81 19 chr1 152475865 152476295 -90188058 - L1MCc LINE L1 -5943 480 24 231 397 84 8 chr1 152476951 152477082 -90187271 + L2 LINE L2 3123 3263 -9 241 260 0 26 chr1 152478622 152478699 -90185654 + A-rich Low_complexity Low_complexity 2 76 0 2013 136 7 0 chr1 152478766 152479092 -90185261 + AluSq SINE Alu 1 328 0 326 386 11 53 chr1 152479290 152479479 -90184874 - MIR SINE MIR -69 193 13 195 350 50 10 chr1 152480706 152480806 -90183547 - MIR SINE MIR -73 189 86 268 200 0 57 chr1 152480935 152481005 -90183348 + T-rich Low_complexity Low_complexity 3 68 0 180 111 0 0 chr1 152481210 152481237 -90183116 + (AATTG)n Simple_repeat Simple_repeat 5 31 0 2096 118 0 0 chr1 152482132 152482412 -90181941 + AluSc SINE Alu 1 280 -29 27 0 0 0 chr1 152482415 152482442 -90181911 + AT_rich Low_complexity Low_complexity 1 27 0 270 271 0 0 chr1 152483305 152483364 -90180989 + (TG)n Simple_repeat Simple_repeat 2 60 0 797 262 133 31 chr1 152484070 152484103 -90180250 - LTR40b LTR ERVL 0 462 434 2071 137 45 25 chr1 152484103 152484460 -90179893 - THE1B LTR MaLR 0 364 1 797 262 133 31 chr1 152484460 152484720 -90179633 - LTR40b LTR ERVL -28 434 139 193 392 29 29 chr1 152485681 152485852 -90178501 - MER5A DNA MER1_type -12 177 7 288 0 0 0 chr1 152485883 152485915 -90178438 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 310 379 0 15 chr1 152487139 152487271 -90177082 - L2 LINE L2 -2 3311 3182 530 192 0 0 chr1 152487836 152487935 -90176418 + MLT1E2 LTR MaLR 528 626 0 1226 228 91 37 chr1 152487957 152488028 -90176325 - L1ME LINE L1 -349 6209 6143 2350 103 3 0 chr1 152488028 152488340 -90176013 - AluSp SINE Alu 0 313 1 1226 228 91 37 chr1 152488340 152489137 -90175216 - L1ME LINE L1 -415 6143 5119 932 237 41 22 chr1 152489216 152489532 -90174821 - L1ME LINE L1 -3181 3359 3038 27 49 0 0 chr1 152489770 152489811 -90174542 + AT_rich Low_complexity Low_complexity 1 41 0 360 285 40 45 chr1 152489851 152490051 -90174302 - L1ME LINE L1 -4498 2042 1844 359 270 60 69 chr1 152490041 152490386 -90173967 + L1ME LINE L1 1001 1388 -4984 * 1325 315 37 27 chr1 152490392 152491087 -90173266 - L1ME LINE L1 -5302 1228 527 19450 162 47 14 chr1 152491348 152491584 -90172769 - L1MA2 LINE L1 0 7723 7496 2419 89 0 0 chr1 152491584 152491887 -90172466 - AluSx SINE Alu -9 303 1 19450 162 47 14 chr1 152491887 152492318 -90172035 - L1MA2 LINE L1 -227 7496 7081 1800 151 128 50 chr1 152492318 152492715 -90171638 - MSTA LTR MaLR 0 428 1 19450 162 47 14 chr1 152492715 152499325 -90165028 - L1MA2 LINE L1 -642 7081 179 760 265 55 5 chr1 152499377 152499577 -90164776 + MER63A DNA MER1_type 1 210 0 980 251 0 9 chr1 152499631 152499850 -90164503 - MER58A DNA MER1_type -4 220 4 183 295 76 38 chr1 152501736 152501841 -90162512 - MIR3 SINE MIR -25 183 75 223 370 102 8 chr1 152501922 152502049 -90162304 - MIR3 SINE MIR -3 205 67 683 314 96 27 chr1 152503016 152503392 -90160961 + L2 LINE L2 2813 3214 -99 34647 35 2 2 chr1 152503489 152508740 -90155613 - L1PA3 LINE L1 -5 6150 900 422 241 10 59 chr1 152508741 152508944 -90155409 - L1PA3 LINE L1 -5376 770 578 14460 56 65 5 chr1 152509100 152511120 -90153233 - L1P LINE L1 -3996 2150 8 312 218 115 0 chr1 152511373 152511460 -90152893 + MIR SINE MIR 91 187 -75 324 0 0 0 chr1 152511468 152511504 -90152849 + (TA)n Simple_repeat Simple_repeat 2 37 0 234 91 0 0 chr1 152511602 152511635 -90152718 + (TA)n Simple_repeat Simple_repeat 1 33 0 222 279 127 44 chr1 152511686 152511800 -90152553 - L3 LINE CR1 -310 1267 1135 739 83 0 18 chr1 152511800 152511909 -90152444 - L1PA11 LINE L1 0 6174 6068 222 279 127 44 chr1 152511909 152511952 -90152401 - L3 LINE CR1 -442 1135 1097 243 271 75 0 chr1 152511969 152512102 -90152251 + L1MC/D LINE L1 5694 5836 -1972 911 228 60 57 chr1 152512161 152512477 -90151876 - L1MC4 LINE L1 -1030 7012 6696 1374 205 61 59 chr1 152512483 152512942 -90151411 + MLT1C LTR MaLR 8 467 0 485 234 40 27 chr1 152512951 152513018 -90151335 - L1MC4 LINE L1 -1140 6645 6580 542 28 14 0 chr1 152513018 152513090 -90151263 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 485 234 40 27 chr1 152513090 152513240 -90151113 - L1MC4 LINE L1 -1205 6580 6444 837 194 6 11 chr1 152513398 152513578 -90150775 + L1P3 LINE L1 9 187 -5688 2940 106 2 2 chr1 152513594 152514056 -90150297 - L1P3 LINE L1 -3662 2799 2338 3329 187 9 31 chr1 152514101 152515335 -90149018 - L1P3 LINE L1 -4423 2038 717 1279 206 25 11 chr1 152515335 152515621 -90148732 - L1P3 LINE L1 -5367 508 219 1314 212 21 10 chr1 152515729 152516017 -90148336 + L1P3 LINE L1 218 508 -5367 21726 149 66 16 chr1 152516017 152520625 -90143728 + L1P3 LINE L1 717 5673 -798 10610 115 14 11 chr1 152520725 152523182 -90141171 + L1PA10 LINE L1 3703 6158 -10 603 294 68 36 chr1 152523513 152523765 -90140588 + MIR SINE MIR 1 260 -2 218 143 0 41 chr1 152523841 152523890 -90140463 - L2 LINE L2 -2 3311 3265 238 104 42 0 chr1 152523907 152523955 -90140398 + LTR66 LTR ERVL 384 433 -177 216 135 0 0 chr1 152523958 152523995 -90140358 + (TA)n Simple_repeat Simple_repeat 1 37 0 354 294 13 85 chr1 152524094 152524247 -90140106 + MIR3 SINE MIR 53 194 -14 2826 136 5 2 chr1 152524354 152524781 -90139572 - MSTA LTR MaLR 0 428 1 538 127 15 30 chr1 152526678 152526812 -90137541 + GA-rich Low_complexity Low_complexity 1 132 0 766 286 37 5 chr1 152527064 152527281 -90137072 + MIR SINE MIR 5 228 -34 684 293 0 11 chr1 152527381 152527555 -90136798 + MER5B DNA MER1_type 7 178 0 205 255 21 0 chr1 152528900 152528947 -90135406 + GA-rich Low_complexity Low_complexity 2 49 0 638 363 41 53 chr1 152530430 152531011 -90133342 - L2 LINE L2 -409 2905 2332 220 220 0 17 chr1 152531627 152531686 -90132667 + CT-rich Low_complexity Low_complexity 1 58 0 376 307 53 0 chr1 152532183 152532297 -90132056 + L2 LINE L2 3116 3235 -37 186 71 0 0 chr1 152533259 152533287 -90131066 + (TG)n Simple_repeat Simple_repeat 1 28 0 288 0 0 0 chr1 152533466 152533498 -90130855 + (A)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr1 152533742 152533767 -90130586 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chr1 152535401 152535433 -90128920 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr1 152535969 152535997 -90128356 + AT_rich Low_complexity Low_complexity 1 28 0 215 333 57 49 chr1 152535997 152536120 -90128233 - L2 LINE L2 -28 3244 3121 314 277 12 0 chr1 152536470 152536553 -90127800 - MIR SINE MIR -82 180 97 3731 273 103 33 chr1 152536674 152539424 -90124929 + L1MEc LINE L1 106 3004 -3211 261 0 0 0 chr1 152539453 152539482 -90124871 + (CA)n Simple_repeat Simple_repeat 2 30 0 356 289 9 0 chr1 152539498 152539612 -90124741 - L1ME1 LINE L1 -47 6119 6005 417 233 19 38 chr1 152539626 152539785 -90124568 + L1ME LINE L1 5569 5724 -442 247 319 34 8 chr1 152539826 152539945 -90124408 - MLT1-int LTR MaLR -770 601 480 * 517 219 121 27 chr1 152539932 152540156 -90124197 + L1MB8 LINE L1 1389 1633 -4751 4730 173 35 6 chr1 152540175 152541142 -90123211 + L1MC2 LINE L1 5345 6339 -5 828 46 0 9 chr1 152541145 152541253 -90123100 - L1PA3 LINE L1 -1 6154 6048 563 278 10 10 chr1 152541264 152541458 -90122895 + L1MB8 LINE L1 1796 1989 -4574 360 273 53 62 chr1 152541605 152541960 -90122393 + L1MB8 LINE L1 1898 2249 -4314 414 226 31 67 chr1 152542114 152542309 -90122044 + L1MB8 LINE L1 4086 4273 -2109 2507 223 63 89 chr1 152542318 152543885 -90120468 + L1MB8 LINE L1 4442 5957 -521 5668 27 0 3 chr1 152543885 152544550 -90119803 - L1PA4 LINE L1 -2 6153 5491 2156 183 20 13 chr1 152544566 152545014 -90119339 + L1MB8 LINE L1 5964 6414 0 207 302 69 52 chr1 152545472 152545588 -90118765 + MIR SINE MIR 21 138 -70 39 38 0 0 chr1 152545690 152545743 -90118610 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr1 152546530 152546553 -90117800 + AT_rich Low_complexity Low_complexity 1 23 0 690 265 12 0 chr1 152547207 152547373 -90116980 - MER45A DNA AcHobo -7 171 4 250 365 12 0 chr1 152547373 152547458 -90116895 + L2 LINE L2 3143 3228 -44 270 0 0 0 chr1 152549367 152549397 -90114956 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 393 22 0 0 chr1 152549396 152549442 -90114911 + (GA)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr1 152549705 152549734 -90114619 + AT_rich Low_complexity Low_complexity 1 29 0 1687 198 61 73 chr1 152550350 152550464 -90113889 + MLT1D LTR MaLR 1 115 -390 230 0 0 32 chr1 152550464 152550495 -90113858 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 1687 198 61 73 chr1 152550495 152550885 -90113468 + MLT1D LTR MaLR 115 499 -6 294 194 0 16 chr1 152551104 152551166 -90113187 - MLT1E LTR MaLR 0 624 564 706 212 0 0 chr1 152551167 152551304 -90113049 - FRAM SINE Alu -2 174 38 1824 251 20 42 chr1 152551307 152551852 -90112501 - MLT1E LTR MaLR -59 534 2 186 43 0 0 chr1 152552871 152552894 -90111459 + (ATG)n Simple_repeat Simple_repeat 3 25 0 234 0 0 0 chr1 152552899 152552925 -90111428 + (TG)n Simple_repeat Simple_repeat 2 27 0 189 388 0 0 chr1 152553860 152553927 -90110426 + L2 LINE L2 2987 3053 -219 300 325 9 26 chr1 152554309 152554423 -90109930 - L2 LINE L2 -2 3311 3200 209 309 0 15 chr1 152554691 152554759 -90109594 - MIR SINE MIR -43 219 153 317 314 81 24 chr1 152555573 152555697 -90108656 + MIR SINE MIR 131 261 -1 3236 112 22 67 chr1 152555724 152556276 -90108077 + MER1A DNA MER1_type 1 527 0 730 257 34 64 chr1 152556458 152556723 -90107630 + MLT1J LTR MaLR 220 476 -35 325 316 0 0 chr1 152557324 152557419 -90106934 + L2 LINE L2 3180 3274 -39 337 286 88 78 chr1 152558594 152559119 -90105234 - L1MC5 LINE L1 -162 7799 7270 226 282 0 47 chr1 152559549 152559634 -90104719 + MIR3 SINE MIR 123 203 -5 234 0 0 0 chr1 152559915 152559941 -90104412 + (CA)n Simple_repeat Simple_repeat 1 26 0 493 316 27 11 chr1 152560135 152560322 -90104031 + L3 LINE CR1 1190 1379 -198 414 232 13 7 chr1 152561259 152561414 -90102939 + (CA)n Simple_repeat Simple_repeat 1 156 0 353 322 7 41 chr1 152561431 152561577 -90102776 + MIR SINE MIR 51 191 -71 337 357 54 0 chr1 152563593 152563722 -90100631 + MIR3 SINE MIR 63 198 -10 223 311 10 58 chr1 152563997 152564100 -90100253 + MIR SINE MIR 78 175 -87 888 257 24 73 chr1 152564364 152564652 -90099701 - Charlie8 DNA MER1_type -2143 274 1 483 302 29 47 chr1 152565258 152565430 -90098923 + MIR3 SINE MIR 17 185 -23 235 234 27 197 chr1 152566164 152566352 -90098001 - L2 LINE L2 0 3272 3117 219 269 0 0 chr1 152567157 152567209 -90097144 - MIR SINE MIR -37 225 174 28 99 0 0 chr1 152567323 152567414 -90096939 + AT_rich Low_complexity Low_complexity 1 91 0 185 80 0 0 chr1 152567708 152567733 -90096620 + MIR SINE MIR 82 106 -102 492 301 141 0 chr1 152568031 152568230 -90096123 - MIR SINE MIR -2 260 34 229 316 143 0 chr1 152568344 152568442 -90095911 + L2 LINE L2 3158 3269 -3 21 36 0 0 chr1 152568850 152568878 -90095475 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 152569199 152569220 -90095133 + AT_rich Low_complexity Low_complexity 1 21 0 1391 104 48 52 chr1 152569506 152569605 -90094748 - MER30 DNA MER1_type 0 230 132 2210 122 3 0 chr1 152569605 152569909 -90094444 + AluSq SINE Alu 1 305 -8 1391 104 48 52 chr1 152569909 152570040 -90094313 - MER30 DNA MER1_type -98 132 1 277 263 25 25 chr1 152570705 152570785 -90093568 - MLT1J LTR MaLR -42 469 390 213 265 48 0 chr1 152570874 152570957 -90093396 + GA-rich Low_complexity Low_complexity 2 88 0 412 340 6 6 chr1 152571491 152571650 -90092703 - ERVL LTR ERVL -392 5372 5214 1431 307 82 50 chr1 152571771 152572676 -90091677 - ERVL LTR ERVL -2589 3065 2098 5195 162 16 28 chr1 152573005 152574594 -90089759 - L1PB1 LINE L1 -1 6150 4592 634 261 116 15 chr1 152575416 152575615 -90088738 - MLT1J LTR MaLR -235 276 58 1701 235 79 67 chr1 152575645 152576389 -90087964 + MER20B DNA MER1_type 30 782 -1 22 0 0 0 chr1 152577036 152577058 -90087295 + AT_rich Low_complexity Low_complexity 1 22 0 583 244 72 31 chr1 152578531 152578724 -90085629 + MIR SINE MIR 62 262 0 201 154 0 0 chr1 152580474 152580513 -90083840 + CT-rich Low_complexity Low_complexity 3 41 0 1901 154 14 11 chr1 152580802 152581165 -90083188 - L1MA6 LINE L1 0 6300 5937 1641 276 26 38 chr1 152581715 152582251 -90082102 + L1M4 LINE L1 3322 3848 -2298 2936 9 0 0 chr1 152582251 152582569 -90081784 + AluYb8 SINE Alu 1 318 0 1641 276 26 38 chr1 152582569 152582790 -90081563 + L1M4 LINE L1 3848 4070 -2076 1045 233 136 36 chr1 152582799 152583129 -90081224 + MLT1A1 LTR MaLR 3 365 0 452 268 10 62 chr1 152583237 152583431 -90080922 + L1MA5 LINE L1 4152 4335 -1811 * 534 163 0 0 chr1 152583430 152583522 -90080831 + L1M4 LINE L1 5662 5753 -431 5823 150 27 6 chr1 152584033 152585055 -90079298 + L1MA5 LINE L1 5254 6297 -3 24 32 0 0 chr1 152585055 152585086 -90079267 + AT_rich Low_complexity Low_complexity 1 31 0 400 237 23 61 chr1 152585367 152585498 -90078855 - MLT1J LTR MaLR -118 393 268 180 369 27 100 chr1 152586884 152587185 -90077168 + L2 LINE L2 2994 3272 0 427 310 94 35 chr1 152587873 152588076 -90076277 - MIR SINE MIR 0 262 48 465 332 88 30 chr1 152589269 152589633 -90074720 + L3 LINE CR1 1180 1564 -13 185 440 12 0 chr1 152589881 152589965 -90074388 + L2 LINE L2 2991 3075 -197 26 50 0 0 chr1 152590049 152590089 -90074264 + AT_rich Low_complexity Low_complexity 1 40 0 521 339 63 29 chr1 152590938 152591411 -90072942 - L2 LINE L2 0 3272 2430 523 312 114 67 chr1 152591471 152592167 -90072186 - L2 LINE L2 -15 3298 2576 231 366 10 0 chr1 152592167 152592268 -90072085 - L2 LINE L2 -1884 1430 1329 668 347 121 16 chr1 152592272 152592894 -90071459 - L2 LINE L2 -2135 1179 493 652 336 62 37 chr1 152593083 152593515 -90070838 - L2 LINE L2 -1177 2137 1695 1017 148 0 0 chr1 152593659 152593814 -90070539 - AluSg/x SINE Alu -6 304 150 2409 290 51 48 chr1 152594230 152595144 -90069209 + L1M4b LINE L1 29 945 -5914 1165 174 24 99 chr1 152595689 152596062 -90068291 + L1M4b LINE L1 1205 1549 -5310 1009 102 0 0 chr1 152596169 152596297 -90068056 + AluSg/x SINE Alu 168 295 -17 1545 255 38 36 chr1 152596307 152596884 -90067469 + L1M4b LINE L1 1776 2353 -4606 3317 227 40 35 chr1 152596943 152598029 -90066324 + L1M4b LINE L1 3374 4465 -2492 295 221 13 13 chr1 152598079 152598156 -90066197 + Ricksha DNA DNA 842 918 -2328 4916 230 37 20 chr1 152598202 152599272 -90065081 + ERVL LTR ERVL 225 1313 -4451 4809 175 7 6 chr1 152599276 152600279 -90064074 + L1PB4 LINE L1 5150 6153 -3 2431 207 28 2 chr1 152600583 152601056 -90063297 + ERVL LTR ERVL 1319 1803 -3961 8660 178 30 0 chr1 152601156 152602649 -90061704 + ERVL LTR ERVL 2045 3582 -2182 6133 156 24 13 chr1 152602645 152603690 -90060663 + ERVL LTR ERVL 4359 5414 -350 * 225 65 0 0 chr1 152603692 152603723 -90060630 + (TG)n Simple_repeat Simple_repeat 2 32 0 286 119 0 0 chr1 152603723 152603765 -90060588 + MLT2C2 LTR ERVL 423 464 0 2335 215 12 18 chr1 152603765 152604332 -90060021 + L1MB8 LINE L1 5614 6177 -1 21 71 0 0 chr1 152604958 152605000 -90059353 + AT_rich Low_complexity Low_complexity 1 42 0 975 156 85 49 chr1 152605053 152605277 -90059076 + LTR12 LTR ERV1 3 234 -480 367 262 24 51 chr1 152605333 152605471 -90058882 + LTR30 LTR ERV1 377 643 -79 496 161 13 2 chr1 152605471 152605562 -90058791 + LTR12 LTR ERV1 389 714 0 1441 215 28 53 chr1 152605667 152606025 -90058328 + MLT1A1 LTR MaLR 10 358 -7 22 0 0 0 chr1 152606649 152606671 -90057682 + AT_rich Low_complexity Low_complexity 1 22 0 468 301 172 0 chr1 152607675 152607884 -90056469 - MIR SINE MIR -14 248 4 273 157 118 0 chr1 152609054 152609105 -90055248 - MLT1J LTR MaLR -76 435 379 276 141 203 0 chr1 152609135 152609234 -90055119 - AluSp/q SINE Alu 0 303 223 4602 221 25 32 chr1 152609235 152609426 -90054927 - L1 LINE L1 -2344 4762 4571 243 0 0 0 chr1 152609426 152609453 -90054900 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1937 125 4 4 chr1 152609455 152609734 -90054619 - AluSp SINE Alu -31 282 4 4602 221 25 32 chr1 152609734 152610803 -90053550 - L1 LINE L1 -2536 4570 3507 463 227 94 30 chr1 152610904 152611107 -90053246 - L1 LINE L1 -4381 2725 2510 2444 244 46 56 chr1 152611108 152611693 -90052660 - L1 LINE L1 -4427 2680 2091 234 81 0 0 chr1 152611693 152611730 -90052623 + (TG)n Simple_repeat Simple_repeat 2 38 0 2444 244 46 56 chr1 152611730 152612735 -90051618 - L1 LINE L1 -5016 2091 1112 3211 194 129 4 chr1 152612838 152613781 -90050572 - L1MC3 LINE L1 -2 7783 6677 1626 219 128 67 chr1 152613774 152614400 -90049953 - L1M4 LINE L1 -1538 4608 3913 * 1223 195 101 52 chr1 152614400 152614748 -90049605 - MLT1A1 LTR MaLR 0 365 1 1626 219 128 67 chr1 152614748 152614986 -90049367 - L1M4 LINE L1 -2233 3913 3691 675 299 88 64 chr1 152615028 152615570 -90048783 + MLT1G LTR MaLR 1 543 -12 305 298 43 0 chr1 152615581 152615675 -90048678 - MLT1J LTR MaLR -413 98 1 23 68 0 0 chr1 152615677 152615721 -90048632 + AT_rich Low_complexity Low_complexity 1 44 0 183 156 0 0 chr1 152615966 152615998 -90048355 + CT-rich Low_complexity Low_complexity 2 33 0 4353 185 36 35 chr1 152616004 152617293 -90047060 - L1MB1 LINE L1 -28 6161 4874 306 253 0 0 chr1 152617281 152617376 -90046977 - L1MB1 LINE L1 -1735 4411 4317 * 1163 190 0 23 chr1 152617378 152617599 -90046754 - L1PB4 LINE L1 -2 6154 5939 741 93 19 0 chr1 152617614 152617721 -90046632 + AluSq/x SINE Alu 1 109 -203 234 288 38 38 chr1 152617825 152617957 -90046396 - MER117 DNA MER1_type -64 133 2 2451 44 0 7 chr1 152618532 152618828 -90045525 - AluY SINE Alu -17 294 1 1510 145 53 27 chr1 152619181 152619443 -90044910 + AluJb SINE Alu 5 273 -39 770 319 51 21 chr1 152620555 152620763 -90043590 - LTR16A LTR ERVL 0 450 227 712 245 141 0 chr1 152620763 152620947 -90043406 + MER63A DNA MER1_type 1 210 0 770 319 51 21 chr1 152620947 152621074 -90043279 - LTR16A LTR ERVL -223 227 105 722 333 50 9 chr1 152621384 152621702 -90042651 - HERVL LTR ERVL -1228 4426 4096 821 325 89 40 chr1 152621779 152622463 -90041890 - HERVL LTR ERVL -1531 3954 3237 3638 296 79 23 chr1 152622574 152623979 -90040374 - HERVL LTR ERVL -1900 3096 1613 308 302 35 35 chr1 152624197 152624313 -90040040 + L2 LINE L2 3179 3294 -19 1250 333 42 17 chr1 152624508 152625033 -90039320 + HERV16 LTR ERVL 796 1333 -3663 322 342 63 13 chr1 152625035 152625193 -90039160 + MIR SINE MIR 71 236 -26 438 294 71 57 chr1 152625405 152625773 -90038580 + MLT1K LTR MaLR 214 586 -2 214 360 0 0 chr1 152625809 152625884 -90038469 - L2 LINE L2 -230 3042 2968 2314 246 68 18 chr1 152626112 152626829 -90037524 - L1ME2 LINE L1 -6 6158 5406 2304 285 124 10 chr1 152626829 152626955 -90037398 + L2 LINE L2 1821 1931 -1383 2156 103 0 14 chr1 152626955 152627288 -90037065 - AluSq SINE Alu 0 329 1 2304 285 124 10 chr1 152627288 152627987 -90036366 + L2 LINE L2 1931 2742 -572 291 274 132 51 chr1 152627988 152628185 -90036168 - L2 LINE L2 -2 3311 3099 431 273 31 8 chr1 152628608 152628736 -90035617 - MIR SINE MIR 0 262 132 361 290 10 10 chr1 152630032 152630132 -90034221 + MIR SINE MIR 30 129 -79 514 212 18 9 chr1 152630132 152630245 -90034108 - MER81 DNA DNA 0 114 1 261 139 0 0 chr1 152630912 152630955 -90033398 + (TA)n Simple_repeat Simple_repeat 2 44 0 2324 142 2 78 chr1 152630964 152631423 -90032930 - L1MC1 LINE L1 -18 6315 5892 221 390 67 0 chr1 152631504 152631609 -90032744 + MIR3 SINE MIR 95 206 -2 26 50 0 0 chr1 152631723 152631763 -90032590 + AT_rich Low_complexity Low_complexity 1 40 0 231 279 16 0 chr1 152632001 152632062 -90032291 + MIR3 SINE MIR 100 161 -47 919 171 44 49 chr1 152632640 152632845 -90031508 - L1 LINE L1 -1240 4906 4703 * 1068 179 20 91 chr1 152632843 152633140 -90031213 + L1MA10 LINE L1 5942 6217 -117 217 295 0 13 chr1 152633148 152633226 -90031127 + CT-rich Low_complexity Low_complexity 3 79 0 212 363 65 77 chr1 152634157 152634493 -90029860 - L2 LINE L2 -5 3267 2936 1942 93 52 4 chr1 152634720 152635026 -90029327 - AluSx SINE Alu 0 321 3 2149 182 18 0 chr1 152635160 152635551 -90028802 - L1MA9 LINE L1 -273 6039 5642 1026 231 66 7 chr1 152635527 152635649 -90028704 + L1MA10 LINE L1 6031 6144 -190 * 180 77 0 0 chr1 152635649 152635675 -90028678 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1026 231 66 7 chr1 152635675 152635838 -90028515 + L1MA10 LINE L1 6144 6333 -1 181 245 38 19 chr1 152636181 152636234 -90028119 + MIR3 SINE MIR 109 162 -46 2319 111 22 33 chr1 152637016 152637384 -90026969 - THE1B LTR MaLR 0 364 1 424 236 70 32 chr1 152637421 152637458 -90026895 - Charlie5 DNA MER1_type -115 2509 2475 1387 238 84 47 chr1 152637458 152637945 -90026408 - MLT1D LTR MaLR 0 505 1 424 236 70 32 chr1 152637945 152638064 -90026289 - Charlie5 DNA MER1_type -149 2475 2347 * 581 250 15 39 chr1 152638058 152638262 -90026091 - Charlie5 DNA MER1_type -2413 199 1 258 260 0 0 chr1 152638310 152638383 -90025970 + (TA)n Simple_repeat Simple_repeat 1 73 0 24 0 0 0 chr1 152639119 152639143 -90025210 + AT_rich Low_complexity Low_complexity 1 24 0 282 125 0 0 chr1 152639914 152639962 -90024391 + (CA)n Simple_repeat Simple_repeat 2 49 0 2131 189 37 43 chr1 152640632 152641124 -90023229 + MLT1D LTR MaLR 17 505 0 3368 107 41 9 chr1 152641190 152641721 -90022632 - L1PA13 LINE L1 -1 6162 5615 599 300 56 27 chr1 152641772 152642015 -90022338 - MIR SINE MIR -2 260 11 1660 173 57 23 chr1 152642045 152642398 -90021955 + MLT1A1 LTR MaLR 1 365 0 192 77 0 0 chr1 152642840 152642866 -90021487 + (A)n Simple_repeat Simple_repeat 1 26 0 411 272 162 0 chr1 152643216 152643389 -90020964 + HAL1b LINE L1 399 599 -749 39578 76 11 4 chr1 152644388 152649833 -90014520 + L1P2 LINE L1 4 5490 -664 17203 46 5 0 chr1 152649832 152651990 -90012363 - L1P LINE L1 -1141 5005 2838 * 513 216 85 45 chr1 152652101 152652277 -90012076 - L1 LINE L1 -1869 4341 4159 1882 241 89 32 chr1 152652285 152653256 -90011097 - L1 LINE L1 -4295 1916 906 236 288 163 0 chr1 152653478 152653558 -90010795 - L1 LINE L1 -5720 421 329 246 229 0 0 chr1 152653620 152653668 -90010685 - L1M3c LINE L1 -5274 867 820 786 320 77 24 chr1 152653718 152654093 -90010260 - L1M3c LINE L1 -5742 399 5 727 365 85 31 chr1 152654298 152655192 -90009161 - L2 LINE L2 -481 2833 1892 881 294 179 17 chr1 152655282 152655817 -90008536 + L2 LINE L2 2317 2938 -376 857 237 110 86 chr1 152655818 152656362 -90007991 - L1ME LINE L1 -352 5810 5254 308 273 91 9 chr1 152656372 152656482 -90007871 - L1ME LINE L1 -945 5201 5083 411 275 21 0 chr1 152656554 152656696 -90007657 + (TA)n Simple_repeat Simple_repeat 1 145 0 330 217 60 0 chr1 152656789 152656872 -90007481 - L1ME LINE L1 -1304 4842 4755 363 250 98 64 chr1 152656945 152656992 -90007361 - L1ME LINE L1 -1545 4601 4557 2468 98 14 0 chr1 152656992 152657349 -90007004 - L1PA13 LINE L1 -1 6162 5801 363 250 98 64 chr1 152657349 152657537 -90006816 - L1ME LINE L1 -1589 4557 4358 200 292 0 21 chr1 152657543 152657639 -90006714 + L2 LINE L2 3100 3193 -120 297 283 83 35 chr1 152657658 152657677 -90006676 + L2 LINE L2 3154 3171 -142 13787 25 5 0 chr1 152657677 152660083 -90004270 - L1PA3 LINE L1 -3 6152 3739 297 283 83 35 chr1 152660083 152660208 -90004145 + L2 LINE L2 3171 3305 -8 9768 193 16 14 chr1 152660536 152663423 -90000930 - L1PA16 LINE L1 -155 6011 3123 2212 97 0 10 chr1 152663481 152663780 -90000573 + AluY SINE Alu 14 309 -2 345 291 72 24 chr1 152665515 152665639 -89998714 - MIR SINE MIR -34 174 38 2414 65 3 3 chr1 152665684 152665991 -89998362 - AluY SINE Alu -4 307 1 534 267 70 12 chr1 152665992 152666164 -89998189 - MIR SINE MIR -61 201 20 210 128 0 0 chr1 152666577 152666616 -89997737 + (T)n Simple_repeat Simple_repeat 1 39 0 479 284 101 59 chr1 152667359 152667665 -89996688 + MLT1H LTR MaLR 231 549 0 1068 279 86 11 chr1 152667787 152668146 -89996207 - L2 LINE L2 -1651 1663 1278 17527 103 13 13 chr1 152668260 152671744 -89992609 - L1PA7 LINE L1 -4 6150 2697 8487 156 48 124 chr1 152671744 152674048 -89990305 - L1P LINE L1 -4005 2141 12 415 262 113 12 chr1 152674061 152674317 -89990036 + L1ME4a LINE L1 5814 6095 -26 234 269 77 0 chr1 152674940 152675018 -89989335 - L2 LINE L2 -54 3259 3176 271 244 23 35 chr1 152675107 152675193 -89989160 + MER112 DNA MER1_type 67 151 -109 1678 160 14 10 chr1 152675227 152675515 -89988838 + AluJb SINE Alu 6 294 -18 560 251 81 28 chr1 152675579 152675800 -89988553 + MIR SINE MIR 31 262 0 283 229 169 25 chr1 152677218 152677336 -89987017 - MIR3 SINE MIR -54 154 20 1184 287 71 24 chr1 152679220 152679922 -89984431 + L2 LINE L2 2577 3309 -4 291 252 19 56 chr1 152680587 152680694 -89983659 - MIR SINE MIR 0 262 160 612 329 185 14 chr1 152680740 152681165 -89983188 + L2 LINE L2 2586 2937 -376 1026 179 86 51 chr1 152681165 152681400 -89982953 + MER33 DNA MER1_type 1 251 -2334 1445 191 14 24 chr1 152681400 152681693 -89982660 - AluJb SINE Alu -21 291 2 1026 179 86 51 chr1 152681693 152681770 -89982583 + MER33 DNA MER1_type 251 324 0 612 329 185 14 chr1 152681770 152681976 -89982377 + L2 LINE L2 2937 3313 0 1009 204 62 0 chr1 152682101 152682312 -89982041 - MER58A DNA MER1_type 0 224 1 410 229 83 28 chr1 152685221 152685330 -89979023 - L2 LINE L2 0 3313 3199 184 214 0 54 chr1 152685320 152685376 -89978977 - L2 LINE L2 -789 2525 2473 * 1259 269 55 117 chr1 152686221 152687015 -89977338 - L2 LINE L2 -832 2482 1805 2598 55 0 0 chr1 152687015 152687326 -89977027 + AluY SINE Alu 1 311 0 1259 269 55 117 chr1 152687326 152687887 -89976466 - L2 LINE L2 -1509 1805 1211 1622 126 14 22 chr1 152688716 152688993 -89975360 + L1PA16 LINE L1 5883 6157 -9 23 0 0 0 chr1 152689161 152689184 -89975169 + AT_rich Low_complexity Low_complexity 1 23 0 213 279 47 0 chr1 152690703 152690789 -89973564 + (TG)n Simple_repeat Simple_repeat 1 90 0 1216 303 112 15 chr1 152691053 152691773 -89972580 + L2 LINE L2 2530 3311 -2 242 297 171 0 chr1 152693685 152693796 -89970557 - MER103 DNA DNA -1 165 36 20445 165 43 16 chr1 152694211 152696098 -89968255 - L1MA3 LINE L1 -23 7701 5868 3424 119 6 6 chr1 152696098 152696609 -89967744 - MER9 LTR ERVK 0 511 1 20445 165 43 16 chr1 152696609 152699507 -89964846 - L1MA3 LINE L1 -1856 5868 3051 207 0 0 0 chr1 152699507 152699530 -89964823 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 20445 165 43 16 chr1 152699530 152702154 -89962199 - L1MA3 LINE L1 -4673 3051 14 2704 40 10 3 chr1 152702355 152703071 -89961282 + L1PA5 LINE L1 5294 6151 -3 21 0 0 0 chr1 152703076 152703097 -89961256 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr1 152703464 152703488 -89960865 + (TA)n Simple_repeat Simple_repeat 1 24 0 998 257 63 2 chr1 152703538 152703994 -89960359 + L1ME LINE L1 4951 5442 -722 * 2121 301 31 21 chr1 152703992 152704838 -89959515 + L1M3b LINE L1 1216 1974 -5522 2332 256 11 68 chr1 152705016 152705626 -89958727 + L1M3b LINE L1 2069 2627 -4869 8629 50 4 10 chr1 152705626 152706702 -89957651 - MER11C LTR ERVK -2 1069 1 2332 256 11 68 chr1 152706702 152706871 -89957482 + L1M3b LINE L1 2627 2804 -4692 21 71 0 0 chr1 152706872 152706914 -89957439 + AT_rich Low_complexity Low_complexity 1 42 0 5370 228 56 39 chr1 152706968 152707029 -89957324 + L1M3b LINE L1 2606 2664 -4901 2197 106 10 0 chr1 152707029 152707330 -89957023 + AluSp SINE Alu 1 304 -9 5370 228 56 39 chr1 152707330 152707685 -89956668 + L1M3b LINE L1 2664 3011 -4554 1755 124 3 106 chr1 152707685 152708015 -89956338 - AluSq SINE Alu -7 296 1 5370 228 56 39 chr1 152708015 152710008 -89954345 + L1M3b LINE L1 3011 4949 -2616 619 129 0 0 chr1 152710009 152710102 -89954251 - L1P3 LINE L1 -2539 3922 3830 * 1724 73 0 0 chr1 152710098 152710344 -89954009 - L1P3 LINE L1 -2993 3468 3223 * 10398 92 23 8 chr1 152710332 152711371 -89952982 - L1P3 LINE L1 -4982 1479 410 216 0 0 0 chr1 152711371 152711395 -89952958 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10398 92 23 8 chr1 152711395 152711811 -89952542 - L1P3 LINE L1 -6051 410 2 267 337 41 0 chr1 152712590 152712688 -89951665 + L2 LINE L2 3171 3272 0 21 0 0 0 chr1 152712900 152712921 -89951432 + AT_rich Low_complexity Low_complexity 1 21 0 237 239 14 14 chr1 152713616 152713687 -89950666 + CT-rich Low_complexity Low_complexity 2 72 0 437 283 137 32 chr1 152714039 152714387 -89949966 - MLT1J2 LTR MaLR -8 438 64 2155 119 26 52 chr1 152714423 152714808 -89949545 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr1 152714915 152714942 -89949411 + AT_rich Low_complexity Low_complexity 1 27 0 1713 160 96 23 chr1 152715483 152715826 -89948527 - Tigger4(Zombi) DNA MER2_type -5 2726 2359 1265 127 5 11 chr1 152715841 152716030 -89948323 - Tigger4(Zombi) DNA MER2_type -2543 188 1 524 264 47 14 chr1 152718227 152718375 -89945978 - MER106B DNA MER1_type -904 155 3 191 317 0 50 chr1 152718376 152718436 -89945917 - MIR3 SINE MIR -47 161 105 1762 145 25 3 chr1 152720338 152720620 -89943733 - AluJb SINE Alu -24 288 1 23 33 0 0 chr1 152721084 152721114 -89943239 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr1 152722429 152722462 -89941891 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr1 152722518 152722541 -89941812 + AT_rich Low_complexity Low_complexity 1 23 0 1535 245 34 26 chr1 152723115 152723621 -89940732 - MER20B DNA MER1_type -85 698 189 286 303 0 0 chr1 152723671 152723747 -89940606 - MER20B DNA MER1_type -690 93 18 26 50 0 0 chr1 152724233 152724273 -89940080 + AT_rich Low_complexity Low_complexity 1 40 0 2000 126 58 28 chr1 152724282 152724646 -89939707 - THE1C LTR MaLR 0 375 1 1350 208 49 0 chr1 152724646 152724911 -89939442 - AluJo SINE Alu -34 278 1 23 54 0 0 chr1 152725109 152725146 -89939207 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr1 152725582 152725604 -89938749 + AT_rich Low_complexity Low_complexity 1 22 0 7584 23 2 0 chr1 152725642 152726769 -89937584 + L1PA3 LINE L1 5013 6141 -14 1731 238 60 15 chr1 152726960 152727426 -89936927 + MLT1D LTR MaLR 1 487 -18 3856 106 26 30 chr1 152727777 152728381 -89935972 + LTR43 LTR ERV1 1 602 0 2327 88 7 0 chr1 152728796 152729092 -89935261 - AluSq SINE Alu -15 298 1 487 257 64 16 chr1 152730545 152730732 -89933621 - L2 LINE L2 -2 3311 3116 283 211 60 82 chr1 152730739 152730904 -89933449 - MLT1J1 LTR MaLR -6 440 336 251 283 175 8 chr1 152730965 152731085 -89933268 - L2 LINE L2 -420 2894 2755 507 359 159 20 chr1 152731816 152732444 -89931909 + L2 LINE L2 1068 1832 -1482 2539 41 0 31 chr1 152732444 152732761 -89931592 - AluY SINE Alu -4 307 1 507 359 159 20 chr1 152732761 152732929 -89931424 + L2 LINE L2 1832 1975 -1339 * 581 269 27 59 chr1 152732928 152733114 -89931239 + MER5A DNA MER1_type 9 188 -1 427 318 104 40 chr1 152733580 152733926 -89930427 - LTR67 LTR ERVL -6 551 184 21 0 0 0 chr1 152734602 152734623 -89929730 + AT_rich Low_complexity Low_complexity 1 21 0 188 427 77 0 chr1 152734789 152734906 -89929447 - MIR SINE MIR -67 141 16 22 56 0 0 chr1 152734940 152734976 -89929377 + AT_rich Low_complexity Low_complexity 1 36 0 222 325 77 17 chr1 152735697 152735814 -89928539 - MIR SINE MIR -63 145 22 2322 176 134 2 chr1 152736224 152736679 -89927674 + MLT2B1 LTR ERVL 6 520 0 537 163 10 0 chr1 152736935 152737033 -89927320 + MER53 DNA DNA 91 189 0 1072 184 133 106 chr1 152737768 152737803 -89926550 - MLT2D LTR ERVL -6 408 375 189 0 0 0 chr1 152737803 152737824 -89926529 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1072 184 133 106 chr1 152737824 152738185 -89926168 - MLT2D LTR ERVL -39 375 1 335 338 56 14 chr1 152738677 152738893 -89925460 + L1ME4a LINE L1 5679 5903 -218 21 36 0 0 chr1 152738991 152739019 -89925334 + AT_rich Low_complexity Low_complexity 1 28 0 349 279 7 29 chr1 152739043 152739183 -89925170 - L1ME3A LINE L1 -5 6234 6098 907 240 131 73 chr1 152739211 152739500 -89924853 - L1ME3A LINE L1 -219 6020 5749 2270 110 21 42 chr1 152739500 152739883 -89924470 - THE1C LTR MaLR 0 375 1 907 240 131 73 chr1 152739883 152740167 -89924186 - L1ME3A LINE L1 -490 5749 5414 974 176 73 10 chr1 152740167 152740371 -89923982 - U3 snRNA snRNA 0 217 1 1033 190 158 27 chr1 152740515 152740778 -89923575 - L1MB1 LINE L1 -11 6178 5885 444 253 52 19 chr1 152740990 152741144 -89923209 + LTR43 LTR ERV1 197 355 -247 730 134 18 0 chr1 152741278 152741406 -89922947 - L1MB1 LINE L1 -273 5895 5782 24 77 0 0 chr1 152741406 152741458 -89922895 + AT_rich Low_complexity Low_complexity 1 52 0 931 279 62 17 chr1 152741489 152742023 -89922330 - L1ME3A LINE L1 -1511 4704 4147 395 253 114 74 chr1 152742041 152743416 -89920937 - L1ME3A LINE L1 -2428 3787 2218 422 291 157 46 chr1 152743501 152743914 -89920439 - L1ME3A LINE L1 -4064 2332 1874 382 294 60 59 chr1 152743928 152744628 -89919725 - L1MDa LINE L1 -4453 1762 1105 1331 303 45 20 chr1 152746417 152746949 -89917404 + L1M2c LINE L1 66 962 -6206 4108 254 77 21 chr1 152747206 152750146 -89914207 + L1M2c LINE L1 1625 4452 -2715 9831 148 29 8 chr1 152750147 152751753 -89912600 + Ricksha DNA DNA 640 2280 -966 2370 155 14 24 chr1 152751781 152752554 -89911799 + Ricksha DNA DNA 2403 3231 -20 3149 195 72 47 chr1 152752561 152753228 -89911125 - L1MB8 LINE L1 -71 6107 5458 1723 141 14 41 chr1 152753228 152753403 -89910950 - AluSx SINE Alu 0 312 147 2088 33 49 0 chr1 152753403 152753648 -89910705 - AluY SINE Alu -16 295 39 1723 141 14 41 chr1 152753648 152753792 -89910561 - AluSx SINE Alu -165 147 1 3149 195 72 47 chr1 152753792 152754475 -89909878 - L1MB8 LINE L1 -720 5458 4730 14571 188 28 34 chr1 152754489 152756536 -89907817 + L1MA4 LINE L1 4 2062 -4420 2083 98 37 7 chr1 152756536 152756832 -89907521 - AluSq SINE Alu -8 305 1 14571 188 28 34 chr1 152756832 152758287 -89906066 + L1MA4 LINE L1 2062 3524 -2958 2106 118 0 3 chr1 152758287 152758574 -89905779 + AluSc SINE Alu 1 286 -23 14571 188 28 34 chr1 152758574 152760143 -89904210 + L1MA4 LINE L1 3524 5101 -1381 2454 57 0 0 chr1 152760143 152760440 -89903913 - AluY SINE Alu -14 297 1 14571 188 28 34 chr1 152760440 152761392 -89902961 + L1MA4 LINE L1 5101 5984 -498 360 0 0 0 chr1 152761392 152761432 -89902921 + (CA)n Simple_repeat Simple_repeat 2 41 0 14571 188 28 34 chr1 152761432 152761926 -89902427 + L1MA4 LINE L1 5984 6479 -3 2382 237 23 13 chr1 152761939 152762623 -89901730 - L1MB8 LINE L1 -1413 4733 4043 937 192 71 83 chr1 152762624 152762962 -89901391 - L1MB8 LINE L1 -2414 3732 3399 282 29 0 0 chr1 152763159 152763194 -89901159 + (CA)n Simple_repeat Simple_repeat 2 36 0 232 352 57 19 chr1 152764925 152765084 -89899269 + MIR3 SINE MIR 41 205 -3 318 302 188 7 chr1 152765213 152765362 -89898991 + MLT1K LTR MaLR 67 242 -346 261 364 34 0 chr1 152765917 152766035 -89898318 - MIR SINE MIR -71 191 70 249 333 82 37 chr1 152766795 152766930 -89897423 + MIR3 SINE MIR 57 197 -11 1371 116 0 0 chr1 152768546 152768761 -89895592 + L1MA2 LINE L1 6090 6304 0 1179 257 123 26 chr1 152768896 152769359 -89894994 + LTR33A LTR ERVL 14 521 -2 234 242 65 0 chr1 152769459 152769521 -89894832 - MIR SINE MIR -77 185 120 1472 98 25 0 chr1 152769724 152769927 -89894426 - AluSg/x SINE Alu -19 291 84 1365 214 72 43 chr1 152770267 152770683 -89893670 + MER39 LTR ERV1 257 684 -23 234 250 0 18 chr1 152770686 152770742 -89893611 + Tigger7 DNA MER2_type 1 55 -650 * 1714 117 4 15 chr1 152770739 152771003 -89893350 + Tigger7 DNA MER2_type 2231 2491 0 527 338 15 15 chr1 152771573 152771777 -89892576 + L3 LINE CR1 1363 1566 -11 181 321 85 48 chr1 152772479 152772644 -89891709 + L2 LINE L2 2852 3022 -250 507 336 63 5 chr1 152772659 152772882 -89891471 + ERVL LTR ERVL 1243 1478 -3518 1216 282 115 48 chr1 152772908 152773533 -89890820 + ERVL LTR ERVL 1606 2272 -2724 1207 292 21 53 chr1 152773774 152774302 -89890051 + ERVL LTR ERVL 4108 4618 -1146 978 242 14 5 chr1 152774695 152774906 -89889447 + MER58A DNA MER1_type 10 222 -2 996 281 77 29 chr1 152776381 152776825 -89887528 - Tigger8 DNA MER2_type -45 621 157 440 304 40 53 chr1 152777015 152777242 -89887111 - MIR SINE MIR -18 244 21 268 271 24 24 chr1 152777790 152777875 -89886478 - MIR SINE MIR -118 144 60 263 283 26 6 chr1 152778611 152778687 -89885666 + MIR3 SINE MIR 95 172 -36 277 344 25 25 chr1 152778914 152779077 -89885276 - L3 LINE CR1 -12 1565 1403 2014 121 0 0 chr1 152780836 152781108 -89883245 + AluSx SINE Alu 27 298 -14 618 246 11 77 chr1 152781437 152781620 -89882733 + MER5B DNA MER1_type 1 171 -7 840 308 87 35 chr1 152781764 152782403 -89881950 - L2 LINE L2 0 3313 2654 729 354 131 28 chr1 152782693 152783539 -89880814 + L2 LINE L2 2358 3264 -8 1244 176 50 17 chr1 152785103 152785405 -89878948 - L1MA8 LINE L1 0 6291 5980 21 0 0 0 chr1 152785975 152785996 -89878357 + AT_rich Low_complexity Low_complexity 1 21 0 2348 78 17 0 chr1 152786154 152786450 -89877903 - AluY SINE Alu -10 301 1 433 316 39 43 chr1 152786767 152786998 -89877355 + MIR SINE MIR 24 253 -9 193 359 207 15 chr1 152787441 152787639 -89876714 - MIR SINE MIR 0 262 27 219 341 0 0 chr1 152788424 152788506 -89875847 + CT-rich Low_complexity Low_complexity 1 82 0 225 286 29 0 chr1 152789022 152789092 -89875261 + MIR SINE MIR 21 92 -170 758 292 0 0 chr1 152789096 152789281 -89875072 - MER5A DNA MER1_type 0 189 5 222 339 0 0 chr1 152792248 152792313 -89872040 + L2 LINE L2 3204 3268 -4 373 306 34 74 chr1 152792694 152793047 -89871306 - HAL1 LINE L1 -23 2484 2146 * 5077 164 23 23 chr1 152793044 152793367 -89870986 - L1MA8 LINE L1 -4 6287 5965 1907 160 106 5 chr1 152793367 152793755 -89870598 + MSTA LTR MaLR 2 428 0 5077 164 23 23 chr1 152793755 152794397 -89869956 - L1MA8 LINE L1 -326 5965 5324 1843 103 0 0 chr1 152794397 152794639 -89869714 - AluY SINE Alu -6 305 64 5077 164 23 23 chr1 152794639 152795374 -89868979 - L1MA8 LINE L1 -967 5324 4585 1344 268 177 46 chr1 152795378 152795409 -89868944 - HAL1 LINE L1 -354 2153 2127 1937 176 30 0 chr1 152795409 152795745 -89868608 - MER7A DNA MER2_type -1 345 2 1344 268 177 46 chr1 152795745 152796976 -89867377 - HAL1 LINE L1 -380 2127 726 251 270 0 16 chr1 152798113 152798176 -89866177 + (CA)n Simple_repeat Simple_repeat 1 62 0 22 35 0 0 chr1 152800735 152800764 -89863589 + AT_rich Low_complexity Low_complexity 1 29 0 361 123 35 0 chr1 152800909 152800966 -89863387 - MER94 DNA DNA -75 59 1 462 248 101 0 chr1 152801181 152801290 -89863063 - L2 LINE L2 0 3313 3194 1630 273 57 106 chr1 152801808 152802073 -89862280 - HAL1 LINE L1 -1370 1137 860 383 186 29 0 chr1 152802073 152802143 -89862210 + MER45 DNA AcHobo 46 117 -1464 1630 273 57 106 chr1 152802143 152803004 -89861349 - HAL1 LINE L1 -1647 860 1 816 244 0 17 chr1 152803534 152803714 -89860639 + MER45A DNA AcHobo 1 177 -1 291 104 0 0 chr1 152804466 152804514 -89859839 + (TG)n Simple_repeat Simple_repeat 2 49 0 264 298 53 0 chr1 152804944 152805038 -89859315 + MIR SINE MIR 90 188 -74 457 307 26 32 chr1 152805499 152805688 -89858665 - MIR SINE MIR -1 261 74 27 29 0 0 chr1 152806035 152806069 -89858284 + AT_rich Low_complexity Low_complexity 1 34 0 245 222 69 28 chr1 152809081 152809153 -89855200 - L3 LINE CR1 -1 1576 1502 956 78 0 0 chr1 152809378 152809493 -89854860 + AluSq/x SINE Alu 4 118 -195 43076 43 7 1 chr1 152809493 152815610 -89848743 + L1PA4 LINE L1 1 6152 -3 1619 86 5 0 chr1 152815626 152815836 -89848517 + AluSp SINE Alu 103 313 0 1355 236 50 30 chr1 152815988 152816349 -89848004 + MLT1A2 LTR MaLR 7 374 0 269 291 29 67 chr1 152816757 152816967 -89847386 - L1MC4a LINE L1 -1884 5924 5723 1508 103 43 13 chr1 152817196 152817428 -89846925 + AluSg/x SINE Alu 72 310 0 448 338 73 58 chr1 152819983 152820447 -89843906 + MLT1K LTR MaLR 100 570 -18 1664 178 39 9 chr1 152822546 152822877 -89841476 - MER2 DNA MER2_type -1 343 3 1914 140 4 4 chr1 152823430 152823755 -89840598 + AluSx SINE Alu 5 329 0 30 27 0 0 chr1 152823852 152823889 -89840464 + AT_rich Low_complexity Low_complexity 1 37 0 827 221 121 8 chr1 152823900 152824140 -89840213 + L1MD3 LINE L1 7729 7995 0 181 71 0 71 chr1 152824342 152824384 -89839969 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 197 158 26 0 chr1 152824681 152824719 -89839634 + L2 LINE L2 3275 3313 0 272 390 16 8 chr1 152825812 152825935 -89838418 - MIR SINE MIR -119 143 20 459 341 57 16 chr1 152826151 152826397 -89837956 + MIR SINE MIR 7 262 0 405 86 0 0 chr1 152826533 152826591 -89837762 + (TG)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr1 152828406 152828435 -89835918 + AT_rich Low_complexity Low_complexity 1 29 0 1103 168 67 126 chr1 152830889 152831277 -89833076 + MLT1A1 LTR MaLR 1 365 0 431 314 96 31 chr1 152832641 152832801 -89831552 + MIR SINE MIR 28 198 -10 182 330 200 0 chr1 152834645 152834745 -89829608 - L2 LINE L2 -16 3256 3137 407 319 59 12 chr1 152835032 152835201 -89829152 + MIR SINE MIR 57 233 -29 982 205 24 48 chr1 152835399 152835648 -89828705 + MIR SINE MIR 10 252 -10 494 119 12 0 chr1 152836739 152836823 -89827530 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 183 318 32 0 chr1 152837224 152837287 -89827066 + L3 LINE CR1 930 994 -583 218 326 53 0 chr1 152837323 152837418 -89826935 + L3b LINE CR1 1104 1203 -380 408 307 85 82 chr1 152837538 152837867 -89826486 - L2 LINE L2 0 3272 2943 226 284 116 32 chr1 152838022 152838117 -89826236 - L2 LINE L2 -12 3260 3158 228 284 12 37 chr1 152838121 152838202 -89826151 - L2 LINE L2 -6 3266 3188 595 243 82 115 chr1 152838352 152838938 -89825415 - MLT1G LTR MaLR -9 581 3 189 305 73 24 chr1 152839079 152839161 -89825192 + MIR SINE MIR 15 100 -162 706 259 43 81 chr1 152839689 152840059 -89824294 - MLT1I LTR MaLR -6 403 48 565 152 11 125 chr1 152841038 152841222 -89823131 - L1MC3 LINE L1 -15 7770 7608 304 75 0 0 chr1 152841258 152841298 -89823055 + L1MA6 LINE L1 5904 5943 -357 429 70 0 0 chr1 152841487 152841544 -89822809 + (CA)n Simple_repeat Simple_repeat 2 58 0 246 128 0 0 chr1 152841544 152841583 -89822770 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr1 152841670 152841692 -89822661 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr1 152841907 152841941 -89822412 + (TA)n Simple_repeat Simple_repeat 1 34 0 2518 62 3 12 chr1 152842604 152842940 -89821413 + L1PA8 LINE L1 5833 6165 -7 22 56 0 0 chr1 152844921 152844957 -89819396 + AT_rich Low_complexity Low_complexity 1 36 0 374 273 78 23 chr1 152845236 152845364 -89818989 - MER5B DNA MER1_type -42 136 2 218 274 26 97 chr1 152845504 152845617 -89818736 + L2 LINE L2 3168 3272 0 180 231 0 0 chr1 152846608 152846660 -89817693 + (TG)n Simple_repeat Simple_repeat 1 52 0 611 135 10 0 chr1 152847256 152847360 -89816993 - MER53 DNA DNA -84 105 1 232 289 0 0 chr1 152847362 152847414 -89816939 + L2 LINE L2 3261 3312 -1 431 288 205 15 chr1 152847763 152847968 -89816385 + MIR SINE MIR 15 258 -4 416 171 0 11 chr1 152849408 152849496 -89814857 + CT-rich Low_complexity Low_complexity 2 88 0 270 334 126 63 chr1 152850788 152851216 -89813137 + L2 LINE L2 2334 2788 -526 24 0 0 0 chr1 152852002 152852026 -89812327 + AT_rich Low_complexity Low_complexity 1 24 0 361 289 268 16 chr1 152852065 152852259 -89812094 - MIR SINE MIR -15 247 5 272 173 25 178 chr1 152852445 152852642 -89811711 - L1MC4 LINE L1 0 8042 7876 4299 226 19 36 chr1 152852653 152853633 -89810720 + L1PA13 LINE L1 2 965 -5822 757 343 27 55 chr1 152853666 152854229 -89810124 + L2 LINE L2 2301 2847 -467 250 379 28 89 chr1 152854278 152854637 -89809716 + L2 LINE L2 2918 3254 -18 362 137 42 0 chr1 152855268 152855363 -89808990 + (TA)n Simple_repeat Simple_repeat 1 99 0 573 294 59 14 chr1 152857598 152857819 -89806534 + MIR SINE MIR 29 259 -3 298 345 84 7 chr1 152858317 152858459 -89805894 - MER91A DNA MER1_type -30 166 14 13300 182 27 35 chr1 152858573 152859524 -89804829 - L1MA1 LINE L1 0 7721 6764 2002 133 0 0 chr1 152859524 152859809 -89804544 + AluSx SINE Alu 14 298 -14 13300 182 27 35 chr1 152859809 152864956 -89799397 - L1MA1 LINE L1 -957 6764 1725 225 0 0 0 chr1 152864956 152864981 -89799372 + (TC)n Simple_repeat Simple_repeat 2 26 0 13300 182 27 35 chr1 152864981 152865408 -89798945 - L1MA1 LINE L1 -5996 1725 1296 1618 231 94 7 chr1 152865414 152865500 -89798853 - L1MA1 LINE L1 -7100 465 388 2140 122 0 0 chr1 152865500 152865803 -89798550 - AluSc SINE Alu -6 303 1 1618 231 94 7 chr1 152865803 152866132 -89798221 - L1MA1 LINE L1 -7177 388 14 619 304 65 16 chr1 152866213 152866460 -89797893 + MIR SINE MIR 1 259 -3 211 313 15 0 chr1 152866782 152866849 -89797504 - L2 LINE L2 -8 3264 3197 1230 309 88 42 chr1 152866956 152868633 -89795720 - L1M4 LINE L1 -873 5273 3520 10725 226 47 15 chr1 152869163 152870085 -89794268 + ERVL-C2 LTR ERVL 3008 3899 -1865 2109 128 0 0 chr1 152870085 152870391 -89793962 + AluSg SINE Alu 1 306 -4 10725 226 47 15 chr1 152870391 152872102 -89792251 + ERVL-C2 LTR ERVL 3899 5756 -8 332 271 234 60 chr1 152872102 152872149 -89792204 + MLT2C2 LTR ERVL 1 39 -425 401 238 123 16 chr1 152872149 152872271 -89792082 + MLT1E3 LTR MaLR 70 204 -420 332 271 234 60 chr1 152872271 152872482 -89791871 + MLT2C2 LTR ERVL 39 446 -18 231 233 58 23 chr1 152872888 152872974 -89791379 + MER53 DNA DNA 94 182 -7 * 373 214 60 0 chr1 152872906 152872990 -89791363 - MER53 DNA DNA -100 89 1 855 209 23 0 chr1 152873043 152873215 -89791138 - MER105 DNA DNA 0 204 29 262 328 25 16 chr1 152873281 152873403 -89790950 + L2 LINE L2 3187 3309 -4 233 261 67 34 chr1 152873509 152873628 -89790725 - L1 LINE L1 -1234 4912 4790 232 299 92 76 chr1 152873871 152874449 -89789904 - L1 LINE L1 -1954 4192 3606 921 314 63 30 chr1 152874591 152875549 -89788804 - L1 LINE L1 -2980 3166 2178 332 360 56 28 chr1 152876026 152876240 -89788113 + L1MEd LINE L1 328 547 -5572 200 100 25 0 chr1 152876870 152876910 -89787443 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 255 366 74 29 chr1 152877310 152877485 -89786868 + L2 LINE L2 3090 3272 0 2168 174 166 2 chr1 152878814 152879261 -89785092 + MLT2B1 LTR ERVL 1 520 0 22 0 0 0 chr1 152879342 152879364 -89784989 + AT_rich Low_complexity Low_complexity 1 22 0 467 224 30 0 chr1 152879377 152879511 -89784842 - MER103 DNA DNA -19 147 10 237 247 204 0 chr1 152879582 152879675 -89784678 - MIR3 SINE MIR -48 160 49 342 347 107 18 chr1 152879809 152880034 -89784319 + L3 LINE CR1 1332 1576 -1 21 0 0 0 chr1 152880762 152880783 -89783570 + AT_rich Low_complexity Low_complexity 1 21 0 638 269 29 18 chr1 152881088 152881259 -89783094 + MIR SINE MIR 3 175 -87 531 241 133 5 chr1 152881323 152881526 -89782827 + L1ME1 LINE L1 3579 3807 -2339 2088 173 23 0 chr1 152881550 152881902 -89782451 - THE1B LTR MaLR -2 362 3 10195 123 44 1 chr1 152881909 152883420 -89780933 - THE1B-int LTR MaLR -5 1575 1 1944 177 33 0 chr1 152883420 152883753 -89780600 - THE1B LTR MaLR 0 364 21 2388 224 61 40 chr1 152883753 152884340 -89780013 + L1ME1 LINE L1 3805 4415 -1731 3259 70 5 7 chr1 152884340 152884783 -89779570 + L1PA7 LINE L1 5713 6154 0 2388 224 61 40 chr1 152884783 152884978 -89779375 + L1ME1 LINE L1 4415 4604 -1542 * 2540 229 29 45 chr1 152884958 152885375 -89778978 + L1ME1 LINE L1 4976 5398 -768 1787 150 54 0 chr1 152885375 152885669 -89778684 + AluSg SINE Alu 1 310 0 2540 229 29 45 chr1 152885669 152886277 -89778076 + L1ME1 LINE L1 5398 5985 -181 607 192 13 13 chr1 152886387 152886538 -89777815 + L1MA10 LINE L1 6182 6332 -2 202 345 0 45 chr1 152886760 152886870 -89777483 + L2 LINE L2 2376 2480 -834 5626 140 20 40 chr1 152888038 152889235 -89775118 - L1MA9 LINE L1 0 6312 5141 1908 250 67 6 chr1 152889233 152889915 -89774438 - L1 LINE L1 -3411 3437 2720 * 377 214 90 0 chr1 152889906 152889995 -89774358 - L1 LINE L1 -4334 2515 2419 * 402 204 61 72 chr1 152890001 152890182 -89774171 - L1M4c LINE L1 -4085 2299 2121 280 237 35 26 chr1 152890196 152890310 -89774043 - L1M4c LINE L1 -4229 2155 2041 346 324 55 28 chr1 152891010 152891192 -89773161 + MIR SINE MIR 49 235 -27 216 309 37 0 chr1 152891309 152891390 -89772963 - L3b LINE CR1 -328 1255 1172 279 282 67 27 chr1 152893488 152893637 -89770716 + L1ME4a LINE L1 4458 4612 -1534 1050 174 0 0 chr1 152893873 152894051 -89770302 - AluSg/x SINE Alu -1 311 134 848 186 57 11 chr1 152894306 152894734 -89769619 - MER69 DNA AcHobo -9 2517 1999 * 1524 243 67 75 chr1 152894719 152895212 -89769141 - MER69 DNA AcHobo -656 570 82 407 345 7 7 chr1 152895240 152895388 -89768965 - MIR SINE MIR -112 150 3 21 0 0 0 chr1 152895506 152895527 -89768826 + AT_rich Low_complexity Low_complexity 1 21 0 492 242 184 42 chr1 152895579 152895938 -89768415 + L1ME4a LINE L1 5478 5887 -234 198 71 0 0 chr1 152895970 152895998 -89768355 + (CA)n Simple_repeat Simple_repeat 1 28 0 432 276 189 14 chr1 152896797 152897014 -89767339 + MIR SINE MIR 7 261 -1 314 263 0 13 chr1 152897157 152897233 -89767120 - MIR3 SINE MIR -9 199 125 2354 68 3 10 chr1 152897774 152898085 -89766268 - AluY SINE Alu -2 309 1 2031 186 74 17 chr1 152898328 152898800 -89765553 - Charlie4a DNA MER1_type -7 501 3 231 223 11 53 chr1 152899143 152899237 -89765116 + L1MC4 LINE L1 6616 6705 -1337 366 226 167 0 chr1 152899296 152899398 -89764955 + L2 LINE L2 3187 3305 -8 399 291 48 30 chr1 152900222 152900387 -89763966 - L3 LINE CR1 -79 1498 1331 371 351 147 32 chr1 152900717 152901159 -89763194 - L3 LINE CR1 -344 1233 741 216 278 53 90 chr1 152901557 152901690 -89762663 + L2 LINE L2 2227 2354 -960 779 270 78 0 chr1 152901857 152902087 -89762266 - MIR SINE MIR -13 249 2 430 213 163 99 chr1 152902291 152902512 -89761841 - LTR16A1 LTR ERVL -105 352 118 233 154 0 0 chr1 152902984 152903023 -89761330 - U2 snRNA snRNA -149 39 1 541 253 5 31 chr1 152903516 152903710 -89760643 - L1MC5 LINE L1 -60 7901 7713 244 390 7 29 chr1 152905702 152905838 -89758515 + L3 LINE CR1 1375 1507 -70 * 867 312 149 19 chr1 152905833 152906525 -89757828 + L2 LINE L2 2434 3220 -93 261 239 68 43 chr1 152906657 152906774 -89757579 + L2 LINE L2 3184 3303 -10 327 213 149 138 chr1 152906928 152907102 -89757251 + LTR33 LTR ERVL 11 198 -323 2547 223 51 32 chr1 152907900 152908612 -89755741 - L1ME1 LINE L1 -15 6220 5496 1753 285 72 31 chr1 152908614 152908726 -89755627 - L1ME1 LINE L1 -4240 2156 2050 429 36 0 0 chr1 152908726 152908781 -89755572 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2039 106 0 3 chr1 152908783 152909065 -89755288 - AluSp SINE Alu -32 281 1 1753 285 72 31 chr1 152909065 152909981 -89754372 - L1ME1 LINE L1 -4346 2050 952 246 192 0 0 chr1 152909981 152910033 -89754320 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 1851 260 35 29 chr1 152910051 152910291 -89754062 - L1ME1 LINE L1 -5194 1060 823 2047 169 14 14 chr1 152910291 152910652 -89753701 - MLT1A1 LTR MaLR -4 361 1 1851 260 35 29 chr1 152910652 152911184 -89753169 - L1ME1 LINE L1 -5431 823 284 221 293 12 24 chr1 152912083 152912165 -89752188 + MER5A DNA MER1_type 81 161 -28 23 0 0 0 chr1 152912454 152912477 -89751876 + AT_rich Low_complexity Low_complexity 1 23 0 283 369 10 0 chr1 152913213 152913316 -89751037 + MIR SINE MIR 38 141 -67 265 308 19 10 chr1 152914115 152914240 -89750113 + GA-rich Low_complexity Low_complexity 1 126 0 2229 110 0 3 chr1 152915118 152915428 -89748925 - AluY SINE Alu -2 309 1 253 314 95 7 chr1 152915653 152915790 -89748563 - Charlie8 DNA MER1_type -2223 194 46 33793 77 10 8 chr1 152915790 152921318 -89743035 + L1PA6 LINE L1 634 6153 -1 243 250 125 0 chr1 152921333 152921389 -89742964 - Charlie8 DNA MER1_type -2354 63 1 255 170 0 0 chr1 152921844 152921891 -89742462 + GA-rich Low_complexity Low_complexity 2 48 0 2074 174 59 2 chr1 152922007 152922415 -89741938 - MSTB1 LTR MaLR -1 431 1 723 249 0 57 chr1 152922430 152922639 -89741714 - MER63A DNA MER1_type -13 197 1 343 318 71 47 chr1 152923807 152924018 -89740335 - MIR SINE MIR -20 242 27 21 0 0 0 chr1 152924248 152924269 -89740084 + AT_rich Low_complexity Low_complexity 1 21 0 719 296 39 11 chr1 152924587 152924871 -89739482 - L1ME LINE L1 -310 5811 5520 180 383 55 23 chr1 152925003 152925131 -89739222 + L2 LINE L2 3140 3271 -1 7040 60 4 2 chr1 152925231 152926491 -89737862 - L1PA8 LINE L1 -14 6158 4893 233 300 50 72 chr1 152927885 152928162 -89736191 - L2 LINE L2 -1191 2123 1853 1955 201 47 60 chr1 152928978 152929490 -89734863 - MLT1D LTR MaLR 0 505 1 382 385 124 23 chr1 152929708 152930564 -89733789 - L2 LINE L2 -338 2976 2035 259 163 0 0 chr1 152930854 152930903 -89733450 + L2 LINE L2 3264 3312 -1 1717 185 10 13 chr1 152931794 152932107 -89732246 + AluJo SINE Alu 1 312 0 828 230 12 0 chr1 152932349 152932514 -89731839 + FRAM SINE Alu 1 163 -13 251 319 124 41 chr1 152933143 152933335 -89731018 - L1ME LINE L1 -365 5799 5578 1569 271 74 0 chr1 152933335 152933792 -89730561 - LTR16C LTR ERVL 0 491 1 251 319 124 41 chr1 152933792 152933865 -89730488 - L1ME LINE L1 -586 5578 5512 259 285 62 28 chr1 152933872 152934194 -89730159 - L1M4 LINE L1 -3751 2631 2295 * 989 233 59 40 chr1 152934184 152934586 -89729767 - L1ME3 LINE L1 -262 5900 5492 1537 186 31 28 chr1 152935188 152935478 -89728875 + AluJo SINE Alu 1 291 -21 239 268 0 24 chr1 152937406 152937488 -89726865 + C-rich Low_complexity Low_complexity 4 83 0 2532 155 9 19 chr1 152938525 152938957 -89725396 - MSTC LTR MaLR 0 428 1 12312 160 57 55 chr1 152939762 152940093 -89724260 + L1MA2 LINE L1 2518 2847 -4718 387 0 0 0 chr1 152940093 152940136 -89724217 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 12312 160 57 55 chr1 152940136 152944023 -89720330 + L1MA2 LINE L1 2847 6752 -813 9932 111 103 40 chr1 152944028 152945737 -89718616 + L1PA7 LINE L1 1 1798 -4653 19747 95 5 14 chr1 152945737 152949339 -89715014 + L1PA7 LINE L1 2838 6450 -19 198 0 0 0 chr1 152949339 152949361 -89714992 + (TA)n Simple_repeat Simple_repeat 1 22 0 228 67 0 0 chr1 152949388 152949418 -89714935 + (TG)n Simple_repeat Simple_repeat 2 31 0 314 198 17 23 chr1 152949465 152949642 -89714711 + (TA)n Simple_repeat Simple_repeat 1 176 0 188 119 0 24 chr1 152949700 152949742 -89714611 + (TA)n Simple_repeat Simple_repeat 1 41 0 2053 153 0 3 chr1 152949753 152950066 -89714287 + AluSx SINE Alu 1 312 0 2166 106 0 0 chr1 152950102 152950411 -89713942 + AluSq SINE Alu 1 309 0 6411 101 29 3 chr1 152950441 152951404 -89712949 + L1MA2 LINE L1 6736 7723 0 944 133 0 0 chr1 152951534 152951685 -89712668 - L1PA15 LINE L1 -6 6159 6009 243 330 78 13 chr1 152951858 152952088 -89712265 + L1ME LINE L1 5592 5836 -285 1382 169 50 121 chr1 152952114 152952535 -89711818 + Tigger2a DNA MER2_type 1 391 -43 240 86 0 0 chr1 152952663 152952698 -89711655 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 43 0 0 chr1 152952697 152952720 -89711633 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 344 360 45 30 chr1 152953196 152953396 -89710957 + MIR SINE MIR 4 206 -56 467 301 52 10 chr1 152953461 152953654 -89710699 - L2 LINE L2 -1 3312 3112 394 380 47 22 chr1 152954028 152954304 -89710049 + L1ME3A LINE L1 551 833 -5286 2025 108 4 0 chr1 152954340 152954609 -89709744 + AluSq SINE Alu 26 295 -18 1644 200 157 50 chr1 152954913 152955372 -89708981 + MLT2B1 LTR ERVL 1 508 -12 1242 245 138 24 chr1 152955394 152955814 -89708539 + ERVL-B1 LTR ERVL 2 469 -5295 896 268 9 9 chr1 152955815 152956028 -89708325 + ERVL-B1 LTR ERVL 735 947 -4817 21106 185 37 13 chr1 152956134 152960035 -89704318 + ERVL-B1 LTR ERVL 1213 5207 -557 1566 286 115 17 chr1 152960061 152962037 -89702316 + L1ME3A LINE L1 2630 4743 -1386 1607 284 21 45 chr1 152962100 152962326 -89702027 + L1ME3A LINE L1 4898 5128 -1025 2255 107 0 0 chr1 152962326 152962625 -89701728 + AluSq SINE Alu 1 299 -14 1607 284 21 45 chr1 152962625 152962984 -89701369 + L1ME3A LINE L1 5128 5494 -659 802 138 8 8 chr1 152962984 152963114 -89701239 + FLAM_C SINE Alu 1 130 -3 1607 284 21 45 chr1 152963114 152963605 -89700748 + L1ME3A LINE L1 5494 5951 -202 427 255 36 71 chr1 152963654 152963850 -89700503 + L1ME3A LINE L1 5945 6133 -20 1690 297 73 4 chr1 152963978 152964579 -89699774 - L2 LINE L2 -243 3070 2429 43873 43 0 2 chr1 152964594 152970758 -89693595 + L1PA3 LINE L1 1 6152 -3 821 218 55 129 chr1 152970893 152971256 -89693097 + MLT1A2 LTR MaLR 1 336 -38 5843 160 22 19 chr1 152971256 152973268 -89691085 + L1PB2 LINE L1 4125 6148 -3 22 0 0 0 chr1 152973487 152973509 -89690844 + AT_rich Low_complexity Low_complexity 1 22 0 749 321 4 24 chr1 152973819 152974065 -89690288 + MIR SINE MIR 12 252 -10 2229 107 0 0 chr1 152974153 152974461 -89689892 - AluSx SINE Alu 0 312 1 289 325 64 14 chr1 152975552 152975843 -89688510 + L2 LINE L2 2703 3054 -218 247 157 41 50 chr1 152976087 152976208 -89688145 + (TA)n Simple_repeat Simple_repeat 2 121 0 267 314 83 51 chr1 152978641 152978797 -89685556 - MER5B DNA MER1_type -14 164 4 342 316 158 32 chr1 152978818 152978976 -89685377 - MER5A DNA MER1_type -8 181 4 330 241 0 83 chr1 152979453 152979561 -89684792 - MLT1H LTR MaLR 0 549 451 5118 136 11 27 chr1 152979618 152980515 -89683838 + L1MA6 LINE L1 5418 6300 0 285 29 0 0 chr1 152980750 152980784 -89683569 + (TC)n Simple_repeat Simple_repeat 1 34 0 503 269 177 0 chr1 152982562 152982737 -89681616 + MIR SINE MIR 57 262 0 240 246 66 78 chr1 152982784 152982951 -89681402 - MLT1J LTR MaLR -22 489 325 419 260 10 19 chr1 152982958 152983062 -89681291 + MER5A DNA MER1_type 4 106 -83 424 193 83 69 chr1 152983237 152983382 -89680971 - MLT1J LTR MaLR -362 149 3 305 220 33 22 chr1 152983859 152983950 -89680403 - MLT1J2 LTR MaLR -14 436 345 2273 94 7 0 chr1 152984654 152984951 -89679402 - AluY SINE Alu -12 299 1 185 105 0 26 chr1 152985583 152985621 -89678732 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 245 128 21 0 chr1 152985684 152985731 -89678622 + (TA)n Simple_repeat Simple_repeat 2 49 0 28 0 0 0 chr1 152986576 152986604 -89677749 + AT_rich Low_complexity Low_complexity 1 28 0 204 163 0 0 chr1 152986694 152986737 -89677616 + (CA)n Simple_repeat Simple_repeat 1 43 0 214 315 204 0 chr1 152987435 152987543 -89676810 + L2 LINE L2 3142 3271 -1 263 226 35 0 chr1 152987859 152987927 -89676426 + MIR SINE MIR 83 141 -67 261 0 0 0 chr1 152988089 152988118 -89676235 + (CA)n Simple_repeat Simple_repeat 2 30 0 275 231 13 13 chr1 152988531 152988609 -89675744 - MIR SINE MIR -49 213 136 475 249 89 61 chr1 152988903 152989101 -89675252 + MLT1J2 LTR MaLR 246 446 0 340 325 114 38 chr1 152989141 152989639 -89674714 - L1ME4a LINE L1 -201 5920 5385 1843 141 126 53 chr1 152990578 152990974 -89673379 + MSTA LTR MaLR 1 425 -3 1858 140 43 18 chr1 152991945 152992273 -89672080 + L1PB4 LINE L1 5806 6141 -15 27 0 0 0 chr1 152992277 152992304 -89672049 + AT_rich Low_complexity Low_complexity 1 27 0 420 303 148 0 chr1 152992375 152992537 -89671816 + MIR SINE MIR 48 233 -29 1528 167 17 114 chr1 152992550 152992963 -89671390 + MLT1A2 LTR MaLR 2 374 0 232 267 17 0 chr1 152994449 152994509 -89669844 + GA-rich Low_complexity Low_complexity 1 61 0 495 261 8 107 chr1 152995331 152995592 -89668761 - L2 LINE L2 0 3313 3079 259 350 29 29 chr1 152995626 152995766 -89668587 - L2 LINE L2 -1475 1839 1700 39 22 0 0 chr1 152995778 152995824 -89668529 + AT_rich Low_complexity Low_complexity 1 46 0 313 333 11 0 chr1 152995824 152995914 -89668439 + L2 LINE L2 1163 1253 -2061 232 170 0 0 chr1 152995963 152996010 -89668343 + (TA)n Simple_repeat Simple_repeat 2 48 0 2185 291 8 68 chr1 152996088 152996939 -89667414 - L2 LINE L2 -1904 1410 611 685 244 139 51 chr1 152997358 152997672 -89666681 - MLT1J2 LTR MaLR 0 450 66 4004 157 92 3 chr1 152997962 152998719 -89665634 + LTR1B LTR ERV1 1 825 -1 2607 96 17 3 chr1 152999672 153000025 -89664328 - THE1B LTR MaLR -6 358 1 417 255 109 27 chr1 153000065 153001219 -89663134 + L1MC4 LINE L1 6489 7901 -141 1846 231 121 76 chr1 153001236 153001936 -89662417 + LTR41 LTR ERVL 8 739 -34 248 303 40 0 chr1 153002033 153002109 -89662244 + L1MC4 LINE L1 7933 8011 -31 367 362 65 0 chr1 153002669 153002807 -89661546 + L2 LINE L2 3121 3267 -5 1870 159 135 21 chr1 153003009 153003393 -89660960 + MSTA LTR MaLR 1 428 0 8527 145 57 36 chr1 153003395 153004940 -89659413 + MSTA-int LTR MaLR 3 1580 0 1691 169 156 8 chr1 153004940 153005313 -89659040 + MSTA LTR MaLR 1 428 0 273 369 27 9 chr1 153005861 153005972 -89658381 + MIR SINE MIR 25 137 -125 280 321 58 22 chr1 153007132 153007269 -89657084 + L2 LINE L2 3172 3313 0 427 303 202 28 chr1 153010235 153010453 -89653900 + MIR SINE MIR 2 257 -5 422 312 69 17 chr1 153011272 153011445 -89652908 + MIR3 SINE MIR 15 196 -12 2329 157 33 19 chr1 153012573 153013000 -89651353 - Tigger2a DNA MER2_type 0 434 2 26 0 0 0 chr1 153014170 153014196 -89650157 + AT_rich Low_complexity Low_complexity 1 26 0 4448 212 15 12 chr1 153014627 153016367 -89647986 + L1MB4 LINE L1 4442 6180 0 330 301 89 39 chr1 153017096 153017299 -89647054 - L1ME4a LINE L1 -4 6117 5905 393 272 89 56 chr1 153017734 153018004 -89646349 - L1ME4a LINE L1 -587 5534 5256 344 298 133 27 chr1 153018188 153018413 -89645940 - L1ME4a LINE L1 -1112 5034 4786 740 186 21 6 chr1 153020236 153020574 -89643779 + GA-rich Low_complexity Low_complexity 1 342 0 4774 229 8 6 chr1 153020574 153021433 -89642920 - ERVL LTR ERVL -4628 1136 273 3501 222 22 7 chr1 153021433 153022154 -89642199 + MER44D DNA MER2_type 1 604 -1 4774 229 8 6 chr1 153022154 153022257 -89642096 - ERVL LTR ERVL -5491 273 172 261 229 0 0 chr1 153022300 153022361 -89641992 - ERVL LTR ERVL -5681 83 23 658 68 0 0 chr1 153022361 153022449 -89641904 + L1MA5A LINE L1 6144 6231 -66 375 189 0 56 chr1 153022470 153022560 -89641793 - MLT2D LTR ERVL -329 85 1 5396 178 34 24 chr1 153022630 153023018 -89641335 + L1MA9 LINE L1 4354 4737 -1575 876 96 0 15 chr1 153023018 153023149 -89641204 + L1PB1 LINE L1 6019 6151 0 5396 178 34 24 chr1 153023149 153024708 -89639645 + L1MA9 LINE L1 4737 6311 -1 747 271 47 0 chr1 153024733 153024947 -89639406 - MER112 DNA MER1_type -5 255 32 994 96 17 17 chr1 153024952 153025003 -89639350 + (GAAA)n Simple_repeat Simple_repeat 1 228 0 994 96 17 17 chr1 153025003 153025180 -89639173 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 256 278 97 56 chr1 153025295 153025511 -89638842 + L1MEc LINE L1 1770 1994 -4402 337 144 0 162 chr1 153025514 153025625 -89638728 + L1MEc LINE L1 2183 2275 -4121 773 243 12 0 chr1 153025626 153025799 -89638554 - MER58A DNA MER1_type -1 223 49 6463 204 50 36 chr1 153025910 153029148 -89635205 + L1PA16 LINE L1 2889 6153 -13 666 289 31 39 chr1 153029152 153029567 -89634786 + L1ME LINE L1 2041 2452 -3932 * 2441 201 105 23 chr1 153029542 153030105 -89634248 + L1MCa LINE L1 7 615 -5811 1323 227 72 21 chr1 153030114 153030489 -89633864 + MSTD LTR MaLR 1 394 -2 6748 216 138 67 chr1 153030537 153030791 -89633562 + L1MCa LINE L1 578 813 -5613 186 43 0 0 chr1 153030791 153030814 -89633539 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6748 216 138 67 chr1 153030814 153033524 -89630829 + L1MCa LINE L1 813 3957 -2469 2371 85 0 0 chr1 153033524 153033817 -89630536 - AluY SINE Alu -18 293 1 6748 216 138 67 chr1 153033817 153035186 -89629167 + L1MCa LINE L1 3957 5228 -1198 724 171 23 23 chr1 153035186 153035361 -89628992 + L1MB7 LINE L1 6001 6175 -9 2058 190 12 10 chr1 153035430 153035836 -89628517 - L1MB8 LINE L1 -170 6008 5602 12022 33 5 0 chr1 153035957 153038171 -89626182 - L1PA3 LINE L1 0 6155 3925 13553 31 1 0 chr1 153038171 153039820 -89624533 + L1P LINE L1 1700 3349 -2797 990 264 61 42 chr1 153039953 153041396 -89622957 + L1ME LINE L1 2801 4342 -2084 380 256 8 0 chr1 153041433 153041554 -89622799 + L1ME LINE L1 4525 4646 -1780 5658 118 29 1 chr1 153041559 153042444 -89621909 - L1PA13 LINE L1 -6 6157 5240 712 222 19 42 chr1 153042443 153042659 -89621694 + L1ME LINE L1 5606 5816 -626 * 270 271 21 0 chr1 153042667 153042763 -89621590 + (TA)n Simple_repeat Simple_repeat 1 98 0 882 70 0 0 chr1 153046037 153046151 -89618202 + L1PA8 LINE L1 6045 6158 -14 291 282 10 19 chr1 153046749 153046852 -89617501 + CT-rich Low_complexity Low_complexity 1 102 0 1064 256 124 23 chr1 153046940 153047334 -89617019 - MLT1J2 LTR MaLR -15 435 2 346 281 0 0 chr1 153048395 153048484 -89615869 + MIR SINE MIR 169 257 -5 251 243 0 29 chr1 153048501 153048571 -89615782 + (TAG)n Simple_repeat Simple_repeat 3 70 0 307 309 65 7 chr1 153051871 153052010 -89612343 + L2 LINE L2 3167 3313 0 907 177 48 38 chr1 153052249 153052458 -89611895 + MER58A DNA MER1_type 4 214 -10 252 216 227 82 chr1 153052873 153053067 -89611286 + MER54A LTR ERVL 310 531 -370 * 1603 230 77 42 chr1 153052894 153053389 -89610964 - MER74A LTR ERVL -46 512 1 198 229 0 0 chr1 153054768 153054803 -89609550 - MIR SINE MIR -183 79 45 212 211 0 0 chr1 153056977 153057015 -89607338 - L2 LINE L2 -8 3305 3268 416 361 55 9 chr1 153057077 153057296 -89607057 - MIR SINE MIR -14 248 20 219 320 182 9 chr1 153057298 153057523 -89606830 + L2 LINE L2 3029 3292 -21 2103 134 0 3 chr1 153057888 153058195 -89606158 + AluSx SINE Alu 4 309 -3 365 369 54 0 chr1 153059841 153059990 -89604363 - MIR3 SINE MIR -17 191 35 21 0 0 0 chr1 153060045 153060066 -89604287 + AT_rich Low_complexity Low_complexity 1 21 0 185 271 14 71 chr1 153061170 153061240 -89603113 + MIR SINE MIR 9 74 -188 395 377 11 11 chr1 153063447 153063622 -89600731 + MIR3 SINE MIR 2 176 -32 434 326 138 19 chr1 153064281 153064600 -89599753 + L3b LINE CR1 1132 1488 -95 234 337 99 0 chr1 153064740 153064841 -89599512 - L2 LINE L2 -216 3056 2946 412 349 30 65 chr1 153064900 153065132 -89599221 + MIR SINE MIR 27 250 -12 264 274 242 0 chr1 153065429 153065524 -89598829 + L2 LINE L2 3153 3270 -2 346 284 101 35 chr1 153065993 153066162 -89598191 + MIR SINE MIR 8 187 -75 302 272 44 95 chr1 153066883 153067041 -89597312 + MIR SINE MIR 57 206 -56 2334 88 0 13 chr1 153067121 153067427 -89596926 - AluY SINE Alu -9 302 1 182 62 31 0 chr1 153067428 153067460 -89596893 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2020 125 4 0 chr1 153067460 153067741 -89596612 - AluSq SINE Alu -31 282 1 184 116 0 47 chr1 153068171 153068214 -89596139 + (TA)n Simple_repeat Simple_repeat 2 42 0 476 119 18 64 chr1 153070301 153070410 -89593943 - ORSL DNA AcHobo 0 275 172 1828 116 11 4 chr1 153070494 153070762 -89593591 - AluSq SINE Alu -1 312 43 323 83 0 0 chr1 153070947 153070995 -89593358 + AluSg SINE Alu 40 87 -213 1205 50 0 0 chr1 153070998 153071137 -89593216 + AluSq/x SINE Alu 1 139 -173 316 353 65 11 chr1 153071168 153071352 -89593001 + MIR3 SINE MIR 15 208 0 366 360 22 34 chr1 153071424 153071571 -89592782 + MIR3 SINE MIR 11 157 -51 894 179 62 6 chr1 153071571 153071750 -89592603 + MER5A DNA MER1_type 1 189 0 366 360 22 34 chr1 153071750 153071780 -89592573 + MIR3 SINE MIR 157 186 -22 226 257 71 14 chr1 153072596 153072666 -89591687 + L2 LINE L2 3229 3302 -11 270 260 6 127 chr1 153073088 153073261 -89591092 + L2 LINE L2 3161 3312 -1 231 188 0 0 chr1 153073268 153073316 -89591037 + (TA)n Simple_repeat Simple_repeat 2 49 0 267 164 0 0 chr1 153073341 153073402 -89590951 + (TA)n Simple_repeat Simple_repeat 1 61 0 320 288 256 26 chr1 153073441 153073632 -89590721 + MIR SINE MIR 28 262 0 2316 62 0 14 chr1 153073799 153074115 -89590238 + AluY SINE Alu 1 312 0 189 336 64 71 chr1 153075178 153075318 -89589035 - L2 LINE L2 0 3272 3134 190 338 176 5 chr1 153075392 153075614 -89588739 + L2 LINE L2 2406 2665 -649 5938 107 14 0 chr1 153075626 153077090 -89587263 + L1PA15 LINE L1 4681 6165 0 716 255 140 0 chr1 153077102 153077302 -89587051 + MIR SINE MIR 35 262 0 2267 118 3 0 chr1 153077302 153077608 -89586745 + AluSx SINE Alu 1 307 -5 300 312 139 37 chr1 153077624 153077968 -89586385 + L2 LINE L2 2716 3101 -212 1224 218 35 3 chr1 153078028 153078317 -89586036 - MER58B DNA MER1_type 0 341 44 366 328 32 0 chr1 153078325 153078450 -89585903 + L2 LINE L2 3185 3313 0 1922 133 52 12 chr1 153078690 153079035 -89585318 + THE1B LTR MaLR 6 364 0 823 229 16 11 chr1 153079071 153079259 -89585094 + MER5A DNA MER1_type 1 189 0 493 273 106 31 chr1 153079272 153079433 -89584920 - MER5B DNA MER1_type -5 173 1 2195 112 3 7 chr1 153080257 153080552 -89583801 + AluSg SINE Alu 1 294 -16 201 262 208 13 chr1 153080650 153080799 -89583554 - MIR SINE MIR -12 250 73 299 293 52 75 chr1 153080994 153081168 -89583185 + MIR SINE MIR 81 250 -12 2362 119 0 0 chr1 153081468 153081778 -89582575 + AluSx SINE Alu 3 312 0 185 156 0 0 chr1 153084011 153084043 -89580310 + MIR SINE MIR 70 101 -107 235 317 167 25 chr1 153084178 153084298 -89580055 + MIR SINE MIR 30 166 -96 193 300 0 0 chr1 153085223 153085273 -89579080 + L2 LINE L2 3264 3313 0 338 42 21 0 chr1 153086429 153086477 -89577876 + (CA)n Simple_repeat Simple_repeat 2 50 0 480 62 0 0 chr1 153087021 153087085 -89577268 + (TA)n Simple_repeat Simple_repeat 2 65 0 193 296 62 37 chr1 153087132 153087213 -89577140 + MIR SINE MIR 2 84 -178 267 215 0 0 chr1 153087855 153087920 -89576433 + (CA)n Simple_repeat Simple_repeat 2 66 0 248 53 26 0 chr1 153089025 153089063 -89575290 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2215 125 3 3 chr1 153089516 153089829 -89574524 + AluSq SINE Alu 1 313 0 1176 251 20 25 chr1 153090004 153090358 -89573995 + L1M2 LINE L1 2331 2682 -4167 2186 267 63 19 chr1 153090368 153091514 -89572839 + L1PA15 LINE L1 1 1654 -5133 970 119 0 0 chr1 153093229 153093363 -89570990 + AluSc SINE Alu 161 294 -15 604 220 0 8 chr1 153093636 153093754 -89570599 + FLAM_A SINE Alu 5 121 -12 1619 156 6 81 chr1 153094446 153094766 -89569587 + AluSx SINE Alu 1 296 -16 245 313 20 33 chr1 153095562 153095714 -89568639 - MIR SINE MIR -8 254 13 13947 208 19 40 chr1 153095815 153099973 -89564380 + L1PA15 LINE L1 1659 5809 -1007 428 202 9 18 chr1 153099973 153100082 -89564271 + U5 snRNA snRNA 7 114 -2 13947 208 19 40 chr1 153100082 153100438 -89563915 + L1PA15 LINE L1 5809 6171 -645 345 205 0 12 chr1 153100439 153100522 -89563831 + L1PA15 LINE L1 6722 6803 -13 10974 188 39 49 chr1 153100683 153104724 -89559629 + L1MA9 LINE L1 2025 5979 -569 303 93 0 0 chr1 153104724 153104767 -89559586 + (CA)n Simple_repeat Simple_repeat 2 44 0 10974 188 39 49 chr1 153104767 153105289 -89559064 + L1MA9 LINE L1 5979 6505 -43 390 134 0 0 chr1 153105994 153106061 -89558292 + (GGA)n Simple_repeat Simple_repeat 3 69 0 246 93 70 0 chr1 153106926 153106995 -89557358 + L1MA9 LINE L1 6497 6568 0 297 277 34 50 chr1 153107596 153107715 -89556638 - MLT2E LTR ERVL -479 149 33 2913 13 0 0 chr1 153107872 153108190 -89556163 - AluYb8 SINE Alu 0 318 1 185 333 247 5 chr1 153108338 153108524 -89555829 + L2 LINE L2 2543 2773 -541 209 273 18 0 chr1 153109104 153109159 -89555194 + L2 LINE L2 3258 3313 0 186 43 0 0 chr1 153109305 153109328 -89555025 + (TG)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr1 153113791 153113828 -89550525 + (TG)n Simple_repeat Simple_repeat 1 37 0 2426 66 0 23 chr1 153114033 153114337 -89550016 + AluY SINE Alu 4 300 -11 674 254 28 28 chr1 153114709 153114922 -89549431 + L1MCc LINE L1 1129 1341 -5082 721 238 49 56 chr1 153114924 153115234 -89549119 + L1MCc LINE L1 1281 1579 -4907 2100 125 17 0 chr1 153115234 153115523 -89548830 - AluSx SINE Alu -18 294 1 721 238 49 56 chr1 153115523 153115580 -89548773 + L1MCc LINE L1 1579 1635 -4851 22 0 0 0 chr1 153116104 153116126 -89548227 + AT_rich Low_complexity Low_complexity 1 22 0 232 398 39 10 chr1 153116503 153116606 -89547747 - L2 LINE L2 -25 3247 3142 2484 70 0 10 chr1 153116853 153117167 -89547186 - AluY SINE Alu 0 311 1 3864 76 9 28 chr1 153117167 153117734 -89546619 - L1PA13 LINE L1 -3 6160 5605 525 62 0 0 chr1 153117734 153117799 -89546554 + L1PA13 LINE L1 5539 5603 -560 803 180 124 9 chr1 153117804 153118021 -89546332 - MER33 DNA MER1_type -57 267 26 220 346 48 29 chr1 153118277 153118381 -89545972 + MIR SINE MIR 48 153 -109 269 287 80 69 chr1 153119307 153119495 -89544858 - LTR16C LTR ERVL -3 488 299 657 333 32 60 chr1 153119986 153120538 -89543815 - ERVL LTR ERVL -379 5314 4739 1380 197 123 37 chr1 153120560 153120966 -89543387 - MLT1C LTR MaLR 0 467 18 332 357 94 0 chr1 153121380 153121551 -89542802 + MIR SINE MIR 48 234 -28 759 258 24 56 chr1 153121635 153121922 -89542431 + MLT1J LTR MaLR 234 511 0 183 80 0 0 chr1 153122658 153122683 -89541670 + (T)n Simple_repeat Simple_repeat 1 25 0 259 264 14 14 chr1 153122825 153122897 -89541456 - MLT1K LTR MaLR -2 586 515 253 250 0 28 chr1 153122835 153122907 -89541446 - LTR67 LTR ERVL -10 547 478 * 629 315 34 10 chr1 153123248 153123555 -89540798 + L2 LINE L2 2792 3104 -209 383 280 80 20 chr1 153123840 153123990 -89540363 + MLT1L LTR MaLR 354 512 -103 305 336 10 0 chr1 153124083 153124187 -89540166 + L2 LINE L2 3168 3272 0 676 249 45 25 chr1 153124237 153124482 -89539871 + L1ME2 LINE L1 4859 5108 -1038 1053 168 17 0 chr1 153124489 153124662 -89539691 + Tigger4(Zombi) DNA MER2_type 3 178 -2553 1519 158 26 7 chr1 153124785 153125058 -89539295 + Tigger4(Zombi) DNA MER2_type 2454 2731 0 2911 241 54 11 chr1 153125062 153126049 -89538304 + L1ME2 LINE L1 5119 6147 -17 319 273 68 8 chr1 153126455 153126587 -89537766 - MER103 DNA DNA -7 159 20 279 242 16 0 chr1 153126847 153126909 -89537444 + L2 LINE L2 2605 2667 -647 203 291 0 0 chr1 153126935 153126990 -89537363 + MIR SINE MIR 96 150 -112 186 43 0 0 chr1 153127272 153127295 -89537058 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 1113 324 99 35 chr1 153127318 153127945 -89536408 - L2 LINE L2 -764 2550 1884 2102 288 282 35 chr1 153127953 153129325 -89535028 - L2 LINE L2 -498 2816 1106 439 254 116 0 chr1 153129451 153129589 -89534764 - MIR SINE MIR -44 218 65 267 167 37 37 chr1 153130095 153130149 -89534204 - MIR3 SINE MIR -21 187 134 205 322 0 17 chr1 153130300 153130359 -89533994 + L2 LINE L2 3207 3264 -8 321 261 51 65 chr1 153131053 153131191 -89533162 - MIR SINE MIR -102 160 25 346 322 81 38 chr1 153131729 153131940 -89532413 + L2 LINE L2 3052 3271 -1 402 274 13 1 chr1 153132083 153132187 -89532166 + MIR SINE MIR 1 108 -100 21 0 0 0 chr1 153132191 153132212 -89532141 + AT_rich Low_complexity Low_complexity 1 21 0 303 340 136 12 chr1 153132604 153132766 -89531587 + MIR SINE MIR 6 187 -75 379 302 116 23 chr1 153132912 153133127 -89531226 + MIR SINE MIR 14 248 -14 1887 172 0 6 chr1 153133287 153133601 -89530752 - AluJo SINE Alu 0 312 1 6582 68 16 2 chr1 153134582 153135449 -89528904 - L1PA7 LINE L1 -4 6150 5272 619 377 94 19 chr1 153135541 153135662 -89528691 + L2 LINE L2 91 201 -3113 2133 113 7 17 chr1 153135662 153135963 -89528390 - AluSx SINE Alu -14 298 1 619 377 94 19 chr1 153135963 153136240 -89528113 + L2 LINE L2 201 456 -2858 634 242 16 0 chr1 153136240 153136368 -89527985 + FLAM_A SINE Alu 1 130 -3 619 377 94 19 chr1 153136368 153136615 -89527738 + L2 LINE L2 456 786 -2528 784 252 8 140 chr1 153136638 153137003 -89527350 - MLT1I LTR MaLR -23 386 70 545 299 6 0 chr1 153137381 153137538 -89526815 - MIR SINE MIR 0 262 105 184 254 28 42 chr1 153137594 153137665 -89526688 + L2 LINE L2 1012 1081 -2233 1641 341 103 46 chr1 153137884 153137925 -89526428 + L2 LINE L2 1074 1111 -2202 2270 96 3 0 chr1 153137925 153138218 -89526135 + AluSp SINE Alu 1 294 -19 1641 341 103 46 chr1 153138218 153140304 -89524049 + L2 LINE L2 1111 3313 0 811 342 55 37 chr1 153140480 153141405 -89522948 + L1ME2 LINE L1 228 1169 -5227 5722 160 20 4 chr1 153141426 153143292 -89521061 + L1PB2 LINE L1 4246 6139 -12 219 103 0 0 chr1 153143300 153143339 -89521014 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 507 254 43 106 chr1 153143381 153143657 -89520696 + L1ME2 LINE L1 1234 1453 -4943 1936 154 13 3 chr1 153143657 153143962 -89520391 + AluSx SINE Alu 1 308 -4 507 254 43 106 chr1 153143962 153144288 -89520065 + L1ME2 LINE L1 1453 1798 -4598 413 280 58 17 chr1 153144447 153144761 -89519592 + L1ME2 LINE L1 2086 2382 -3833 5944 249 36 29 chr1 153144767 153146999 -89517354 + L1MB7 LINE L1 2884 5048 -1098 329 129 0 97 chr1 153147010 153147072 -89517281 + Alu SINE Alu 238 293 -9 378 251 55 12 chr1 153147072 153147235 -89517118 + L1ME2 LINE L1 3039 3208 -3007 577 189 44 29 chr1 153147239 153147399 -89516954 + MLT1A1 LTR MaLR 10 199 -166 2803 136 9 0 chr1 153147400 153147848 -89516505 + L1PA16 LINE L1 5706 6157 -9 3158 231 35 17 chr1 153147850 153148675 -89515678 + L1ME2 LINE L1 5383 6222 -11 374 284 163 16 chr1 153148971 153149161 -89515192 + MIR SINE MIR 45 262 0 2139 102 20 7 chr1 153149607 153149902 -89514451 + AluSx SINE Alu 1 299 -13 3978 159 61 53 chr1 153149919 153150148 -89514205 + L1MB7 LINE L1 5103 5329 -855 2391 112 0 0 chr1 153150148 153150460 -89513893 + AluSx SINE Alu 1 312 0 3978 159 61 53 chr1 153150460 153151300 -89513053 + L1MB7 LINE L1 5329 6177 -7 353 265 92 24 chr1 153151758 153151892 -89512461 + MIR SINE MIR 2 140 -68 205 271 0 0 chr1 153152039 153152087 -89512266 - L2 LINE L2 -5 3308 3261 294 250 36 12 chr1 153152183 153152267 -89512086 + L2 LINE L2 3228 3313 0 1834 134 74 0 chr1 153152323 153152606 -89511747 + AluSq SINE Alu 1 304 -9 230 272 136 33 chr1 153152812 153152939 -89511414 + MIR SINE MIR 19 163 -45 21 36 0 0 chr1 153153183 153153211 -89511142 + AT_rich Low_complexity Low_complexity 1 28 0 423 270 108 13 chr1 153153667 153153832 -89510521 - MIR SINE MIR -62 146 4 1934 76 3 99 chr1 153153918 153154221 -89510132 - AluSx SINE Alu -38 274 1 184 277 15 15 chr1 153154327 153154392 -89509961 - MIR SINE MIR -109 153 89 217 210 81 48 chr1 153154639 153154701 -89509652 + L3b LINE CR1 1284 1347 -236 213 39 0 0 chr1 153154701 153154727 -89509626 + (GAAA)n Simple_repeat Simple_repeat 4 29 0 193 385 22 0 chr1 153154949 153155040 -89509313 + MIR SINE MIR 50 142 -66 2275 99 3 26 chr1 153155652 153155965 -89508388 + AluSx SINE Alu 1 306 -6 8116 215 34 18 chr1 153156443 153157311 -89507042 - L1MB3 LINE L1 0 6183 5331 194 0 39 0 chr1 153157311 153157337 -89507016 + (TTG)n Simple_repeat Simple_repeat 1 27 0 8116 215 34 18 chr1 153157337 153157913 -89506440 - L1MB3 LINE L1 -852 5331 4766 2314 84 0 10 chr1 153157913 153158211 -89506142 + AluY SINE Alu 1 295 -16 8116 215 34 18 chr1 153158211 153159337 -89505016 - L1MB3 LINE L1 -1417 4766 3564 2012 113 3 64 chr1 153159337 153159666 -89504687 + AluSx SINE Alu 1 309 -3 8116 215 34 18 chr1 153159666 153160281 -89504072 - L1MB3 LINE L1 -2619 3564 2961 4557 232 34 40 chr1 153160276 153160641 -89503712 + MLT1A1-int LTR MaLR 61 426 -1309 * 2310 108 0 13 chr1 153160641 153160957 -89503396 + AluSx SINE Alu 1 312 0 4557 232 34 40 chr1 153160957 153162389 -89501964 + MLT1A1-int LTR MaLR 426 1724 -11 1605 194 35 38 chr1 153162399 153162765 -89501588 + MLT1A1 LTR MaLR 1 365 0 258 255 0 0 chr1 153163905 153163956 -89500397 + L2 LINE L2 3254 3304 -9 325 248 132 16 chr1 153164254 153164375 -89499978 - L2 LINE L2 -1 3312 3178 1049 226 55 66 chr1 153164583 153165021 -89499332 + L1ME3A LINE L1 5689 6121 -49 225 154 0 0 chr1 153165028 153165067 -89499286 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 329 292 0 34 chr1 153165663 153165752 -89498601 - L2 LINE L2 -1 3271 3186 285 377 78 36 chr1 153166261 153166646 -89497707 + L2 LINE L2 2324 2724 -590 1067 263 88 5 chr1 153166719 153167095 -89497258 + L1MC/D LINE L1 5404 5810 -1998 204 163 0 0 chr1 153167100 153167143 -89497210 + A-rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chr1 153167338 153167382 -89496971 + AT_rich Low_complexity Low_complexity 1 44 0 1451 159 121 18 chr1 153167472 153167812 -89496541 - THE1C LTR MaLR 0 375 1 408 176 49 10 chr1 153168335 153168502 -89495851 + MER3 DNA MER1_type 1 209 0 650 351 25 0 chr1 153168506 153168708 -89495645 - MIR SINE MIR -38 224 18 25 51 0 0 chr1 153168783 153168822 -89495531 + AT_rich Low_complexity Low_complexity 1 39 0 225 0 0 0 chr1 153168873 153168898 -89495455 + (A)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr1 153169119 153169142 -89495211 + (A)n Simple_repeat Simple_repeat 1 23 0 878 189 106 42 chr1 153169150 153169455 -89494898 + MER57A LTR ERV1 104 402 -1 2810 234 41 51 chr1 153169457 153170618 -89493735 - L1ME2 LINE L1 0 6164 5023 1950 299 38 5 chr1 153170697 153171303 -89493050 + MLT2E LTR ERVL 1 626 -2 1972 165 83 15 chr1 153171310 153171709 -89492644 + MSTB LTR MaLR 1 426 0 240 317 179 32 chr1 153172594 153172717 -89491636 + MIR3 SINE MIR 40 180 -28 200 303 40 40 chr1 153174602 153174678 -89489675 - L2 LINE L2 -3 3310 3235 1657 176 0 17 chr1 153174760 153175076 -89489277 + AluJb SINE Alu 1 311 0 219 296 93 0 chr1 153175866 153175974 -89488379 - MIR SINE MIR 0 262 145 180 125 0 0 chr1 153176219 153176251 -89488102 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 230 343 57 0 chr1 153176812 153176917 -89487436 - MIR SINE MIR -76 186 76 417 294 28 7 chr1 153177072 153177215 -89487138 - L2 LINE L2 0 3313 3168 387 0 0 0 chr1 153177219 153177262 -89487091 + (TG)n Simple_repeat Simple_repeat 2 44 0 913 324 61 9 chr1 153178493 153178965 -89485388 - L2 LINE L2 -150 3163 2669 268 150 20 0 chr1 153179275 153179336 -89485017 - MLT1G LTR MaLR -11 579 476 2123 114 7 0 chr1 153180050 153180339 -89484014 - AluSg SINE Alu -19 291 1 226 329 131 22 chr1 153180693 153180830 -89483523 + MIR3 SINE MIR 48 199 -9 357 316 19 70 chr1 153181366 153181524 -89482829 - MIR SINE MIR -54 208 59 764 301 88 18 chr1 153181647 153182036 -89482317 + MLT1J2 LTR MaLR 59 448 -2 501 316 63 5 chr1 153182054 153182244 -89482109 - L3 LINE CR1 -107 1470 1270 536 269 50 0 chr1 153183184 153183344 -89481009 - MIR SINE MIR -10 252 85 215 268 0 70 chr1 153183418 153183489 -89480864 - MIR SINE MIR -67 141 76 314 303 34 50 chr1 153183755 153183874 -89480479 + MIR3 SINE MIR 58 174 -34 2141 125 0 0 chr1 153185378 153185665 -89478688 + AluSx SINE Alu 1 287 -25 23 33 0 0 chr1 153185665 153185695 -89478658 + AT_rich Low_complexity Low_complexity 1 30 0 936 108 0 32 chr1 153185773 153185959 -89478394 + (TA)n Simple_repeat Simple_repeat 1 180 0 1601 199 102 40 chr1 153185961 153186384 -89477969 - MLT2B1 LTR ERVL -71 449 1 2666 184 26 33 chr1 153186398 153186898 -89477455 + MLT2B3 LTR ERVL 14 511 -43 246 32 0 0 chr1 153186898 153186929 -89477424 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 2666 184 26 33 chr1 153186929 153186973 -89477380 + MLT2B3 LTR ERVL 511 554 0 623 278 67 57 chr1 153186974 153187484 -89476869 - HAL1 LINE L1 -910 1597 1083 421 180 73 27 chr1 153187533 153187683 -89476670 - HAL1 LINE L1 -1511 996 840 2283 116 3 0 chr1 153187692 153188002 -89476351 + AluSp SINE Alu 1 311 -2 317 156 0 16 chr1 153188006 153188070 -89476283 + L1MC/D LINE L1 5769 5831 -411 519 274 87 78 chr1 153188271 153188821 -89475532 - HAL1 LINE L1 -1886 621 67 270 73 0 0 chr1 153188835 153188876 -89475477 + (TG)n Simple_repeat Simple_repeat 2 42 0 677 116 47 23 chr1 153189055 153189227 -89475126 + G-rich Low_complexity Low_complexity 3 178 0 247 65 0 0 chr1 153189227 153189258 -89475095 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 226 87 43 0 chr1 153190303 153190349 -89474004 + CT-rich Low_complexity Low_complexity 1 48 0 280 279 0 0 chr1 153190424 153190492 -89473861 + L2 LINE L2 3245 3312 -1 264 100 0 0 chr1 153192083 153192123 -89472230 + (TC)n Simple_repeat Simple_repeat 1 40 0 990 234 68 9 chr1 153192172 153192844 -89471509 - L1ME1 LINE L1 -47 6119 5255 626 211 14 103 chr1 153193161 153193374 -89470979 - MER58A DNA MER1_type -3 221 28 348 24 0 0 chr1 153193399 153193440 -89470913 + (CA)n Simple_repeat Simple_repeat 2 42 0 560 304 61 6 chr1 153194302 153194483 -89469870 - MIR SINE MIR -16 246 56 2095 139 7 0 chr1 153196444 153196746 -89467607 + AluSq SINE Alu 9 312 -1 2012 169 25 3 chr1 153196746 153197100 -89467253 - MSTB LTR MaLR -64 362 1 8707 170 27 30 chr1 153197100 153198756 -89465597 - MSTB-int LTR MaLR 0 1651 2 1090 169 29 19 chr1 153198757 153198964 -89465389 - MSTB LTR MaLR -2 424 216 993 112 0 8 chr1 153198965 153199099 -89465254 + AluSq/x SINE Alu 1 133 -179 702 274 17 0 chr1 153199229 153199408 -89464945 + MIR SINE MIR 4 185 -77 1163 178 14 14 chr1 153199425 153199633 -89464720 + AluJo SINE Alu 86 293 -19 239 286 0 0 chr1 153199634 153199690 -89464663 + MIR SINE MIR 207 262 0 320 291 34 67 chr1 153200515 153200694 -89463659 - MLT1J LTR MaLR -338 173 1 213 333 24 24 chr1 153200815 153200899 -89463454 - L2 LINE L2 -4 3268 3185 21 0 0 0 chr1 153200954 153200975 -89463378 + AT_rich Low_complexity Low_complexity 1 21 0 2324 101 0 3 chr1 153200990 153201286 -89463067 + AluSx SINE Alu 2 296 -16 4700 262 86 6 chr1 153201337 153202770 -89461583 + L1MB7 LINE L1 69 1615 -5244 414 203 0 13 chr1 153202777 153202856 -89461497 + FLAM_C SINE Alu 30 107 -36 631 191 13 15 chr1 153202862 153203157 -89461196 + GA-rich Low_complexity Low_complexity 1 294 0 2470 245 59 88 chr1 153203182 153203803 -89460550 + L1MB7 LINE L1 1601 2238 -4719 1981 129 16 30 chr1 153203803 153204106 -89460247 + AluSx SINE Alu 1 299 -13 2470 245 59 88 chr1 153204106 153205525 -89458828 + L1MB7 LINE L1 2238 3695 -3262 800 209 0 13 chr1 153205525 153205678 -89458675 + FRAM SINE Alu 2 152 -24 2470 245 59 88 chr1 153205678 153206120 -89458233 + L1MB7 LINE L1 3695 4148 -2809 3488 91 4 0 chr1 153206120 153206616 -89457737 + L1MA2 LINE L1 5807 6304 0 2470 245 59 88 chr1 153206616 153207141 -89457212 + L1MB7 LINE L1 4148 4793 -2164 2246 123 0 3 chr1 153207149 153207457 -89456896 + AluSx SINE Alu 1 307 -5 2771 16 0 0 chr1 153207484 153207788 -89456565 + AluYa5 SINE Alu 1 304 -7 874 173 8 81 chr1 153207789 153207892 -89456461 + L1MB7 LINE L1 5991 6100 -885 1950 138 7 7 chr1 153207892 153208183 -89456170 + AluSx SINE Alu 1 291 -21 874 173 8 81 chr1 153208183 153208363 -89455990 + L1MB7 LINE L1 6100 6261 -724 40111 41 21 11 chr1 153208368 153214461 -89449892 + L1PA2 LINE L1 3 6155 0 2251 203 40 2 chr1 153214461 153215023 -89449330 + L1MB7 LINE L1 6251 6819 -176 326 200 100 10 chr1 153215265 153215365 -89448988 - HERV16 LTR ERVL -201 5284 5176 1212 326 89 37 chr1 153215801 153216184 -89448169 - HERV16 LTR ERVL -1281 4204 3842 189 0 0 0 chr1 153216184 153216205 -89448148 + (TA)n Simple_repeat Simple_repeat 1 21 0 1212 326 89 37 chr1 153216205 153217008 -89447345 - HERV16 LTR ERVL -1643 3842 2988 402 102 0 0 chr1 153217023 153217072 -89447281 + Alu SINE Alu 2 50 -268 914 135 0 0 chr1 153217072 153217205 -89447148 + AluSg/x SINE Alu 149 281 -31 3973 316 32 27 chr1 153217207 153219239 -89445114 - HERV16 LTR ERVL -2130 2866 841 921 293 127 15 chr1 153219850 153220253 -89444100 - LTR16B LTR ERVL -16 448 1 658 277 54 102 chr1 153221322 153221763 -89442590 - MLT1K LTR MaLR -91 497 78 715 314 62 0 chr1 153222265 153222507 -89441846 - MIR SINE MIR 0 262 6 224 290 177 16 chr1 153222479 153222603 -89441750 + MIR SINE MIR 62 205 -57 * 369 238 24 35 chr1 153222701 153222842 -89441511 + MIR SINE MIR 42 176 -66 2164 116 0 14 chr1 153225054 153225371 -89438982 + AluSx SINE Alu 1 312 0 1353 128 140 40 chr1 153225522 153225772 -89438581 + THE1B LTR MaLR 90 364 0 246 327 19 19 chr1 153226388 153226495 -89437858 - MIR SINE MIR -66 142 36 238 342 37 25 chr1 153227078 153227239 -89437114 + MIR SINE MIR 90 252 -10 1406 166 33 44 chr1 153227435 153227706 -89436647 + Tigger3b DNA MER2_type 1 268 -963 6193 108 36 17 chr1 153227790 153228755 -89435598 + Tigger3b DNA MER2_type 248 1231 0 1938 168 0 3 chr1 153229289 153229587 -89434766 - AluJo SINE Alu -13 299 3 952 321 73 12 chr1 153229842 153229982 -89434371 + LTR16A LTR ERVL 1 131 -319 1778 104 8 17 chr1 153229982 153230223 -89434130 + AluSx SINE Alu 57 295 -17 952 321 73 12 chr1 153230223 153230506 -89433847 + LTR16A LTR ERVL 131 450 0 592 317 65 4 chr1 153230937 153231183 -89433170 + MIR SINE MIR 2 262 0 1178 194 9 14 chr1 153231493 153231709 -89432644 - MER58A DNA MER1_type 0 224 10 2265 118 3 6 chr1 153232283 153232637 -89431716 - AluSx SINE Alu 0 353 1 335 347 47 20 chr1 153232762 153232912 -89431441 + MIR3 SINE MIR 25 178 -30 204 182 0 0 chr1 153233388 153233432 -89430921 + GA-rich Low_complexity Low_complexity 2 45 0 222 118 0 0 chr1 153233626 153233660 -89430693 + (A)n Simple_repeat Simple_repeat 1 34 0 1882 123 142 6 chr1 153234717 153235035 -89429318 + MER46B DNA MER2_type 1 236 0 2905 197 30 46 chr1 153235035 153235080 -89429273 - MLT2B3 LTR ERVL 0 554 510 471 18 0 0 chr1 153235080 153235136 -89429217 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 2167 126 3 0 chr1 153235136 153235438 -89428915 - AluSx SINE Alu -9 303 1 2905 197 30 46 chr1 153235438 153235952 -89428401 - MLT2B3 LTR ERVL -42 512 1 202 233 17 17 chr1 153235975 153236035 -89428318 + L2 LINE L2 3161 3220 -93 357 327 75 0 chr1 153236089 153236196 -89428157 - L2 LINE L2 0 3272 3158 285 225 75 0 chr1 153236267 153236347 -89428006 - MIR SINE MIR 0 262 177 3641 73 13 9 chr1 153236347 153236798 -89427555 - MLT2A2 LTR ERVL 0 453 1 448 290 22 14 chr1 153236864 153237002 -89427351 - MIR SINE MIR -87 175 37 316 213 33 0 chr1 153237047 153237108 -89427245 - L2 LINE L2 -243 3070 3008 2458 84 0 0 chr1 153237119 153237429 -89426924 + AluY SINE Alu 1 310 -1 336 266 59 104 chr1 153237927 153238149 -89426204 + MIR SINE MIR 18 229 -33 193 311 0 0 chr1 153238459 153238520 -89425833 - MIR SINE MIR -58 204 144 599 313 134 26 chr1 153238536 153238887 -89425466 + MLT1I LTR MaLR 21 409 0 2112 124 13 0 chr1 153239026 153239325 -89425028 + AluSg SINE Alu 8 310 0 203 323 104 0 chr1 153239967 153240063 -89424290 + MIR3 SINE MIR 91 196 -12 198 0 0 0 chr1 153241048 153241070 -89423283 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 221 83 28 0 chr1 153241069 153241105 -89423248 + (TA)n Simple_repeat Simple_repeat 1 37 0 393 313 62 92 chr1 153241128 153241355 -89422998 + L2 LINE L2 2977 3196 -76 237 282 14 0 chr1 153241520 153241591 -89422762 + L2 LINE L2 3242 3313 0 454 281 113 31 chr1 153242493 153242749 -89421604 - L2 LINE L2 -4 3309 3033 2276 92 3 7 chr1 153242750 153243053 -89421300 + AluSp SINE Alu 1 302 -11 2180 94 14 0 chr1 153243116 153243404 -89420949 + AluSx SINE Alu 1 292 -20 2450 81 0 0 chr1 153243404 153243701 -89420652 + AluSg SINE Alu 1 298 -12 383 320 89 36 chr1 153243723 153243948 -89420405 - L2 LINE L2 -571 2743 2507 1869 221 125 62 chr1 153244818 153245066 -89419287 + MLT1E2 LTR MaLR 5 236 -390 2067 123 24 0 chr1 153245066 153245358 -89418995 + AluSx SINE Alu 1 299 -13 1869 221 125 62 chr1 153245358 153245694 -89418659 + MLT1E2 LTR MaLR 236 626 0 572 251 73 55 chr1 153245924 153246143 -89418210 + MIR SINE MIR 8 230 -32 464 340 73 28 chr1 153246631 153246878 -89417475 - MIR SINE MIR 0 262 5 222 348 11 11 chr1 153247063 153247155 -89417198 + MIR SINE MIR 19 110 -98 1995 104 15 0 chr1 153247201 153247471 -89416882 + AluSx SINE Alu 33 306 -6 2411 81 7 0 chr1 153247644 153247941 -89416412 - AluSp SINE Alu -14 299 1 1994 117 7 7 chr1 153247941 153248231 -89416122 - Tigger3b DNA MER2_type -1 1230 941 15828 136 15 107 chr1 153248249 153251587 -89412766 + L1P LINE L1 12 3040 -3106 2112 74 0 0 chr1 153251565 153251835 -89412518 + L1PA7 LINE L1 5885 6154 0 * 3881 131 44 35 chr1 153251842 153252566 -89411787 - Tigger3b DNA MER2_type -276 955 225 988 132 0 2 chr1 153252569 153252804 -89411549 + AluJ SINE Alu 3 293 -19 1391 185 58 8 chr1 153252810 153253069 -89411284 - Tigger3b DNA MER2_type -958 273 2 313 365 79 0 chr1 153253647 153253773 -89410580 + L2 LINE L2 3137 3272 0 1368 171 136 15 chr1 153254648 153254988 -89409365 + MLT1A1 LTR MaLR 1 365 0 1641 159 114 0 chr1 153255140 153255411 -89408942 + AluJb SINE Alu 1 302 0 245 333 77 0 chr1 153255434 153255512 -89408841 + MIR SINE MIR 2 85 -177 426 238 20 147 chr1 153255517 153255659 -89408694 + L2 LINE L2 1539 1612 -1702 1314 34 5 20 chr1 153255659 153255862 -89408491 + (GAAA)n Simple_repeat Simple_repeat 1 200 0 426 238 20 147 chr1 153255862 153256071 -89408282 + L2 LINE L2 1612 1846 -1468 4608 220 85 28 chr1 153256124 153256662 -89407691 - ERVL-B3 LTR ERVL -4540 1224 718 1892 170 0 19 chr1 153256662 153256974 -89407379 - AluJb SINE Alu -6 306 1 4608 220 85 28 chr1 153256974 153257541 -89406812 - ERVL-B3 LTR ERVL -5046 718 56 1977 294 58 33 chr1 153257546 153257600 -89406753 + L2 LINE L2 1835 1886 -1428 3345 154 23 46 chr1 153257600 153258165 -89406188 - MLT2B3 LTR ERVL -2 552 1 1977 294 58 33 chr1 153258165 153259066 -89405287 + L2 LINE L2 1886 2864 -450 21 0 0 0 chr1 153260205 153260226 -89404127 + AT_rich Low_complexity Low_complexity 1 21 0 288 345 17 35 chr1 153260345 153260461 -89403892 - MIR3 SINE MIR -46 162 49 276 154 15 46 chr1 153260519 153260584 -89403769 + L2 LINE L2 3251 3313 0 1798 163 23 7 chr1 153261154 153261461 -89402892 - AluJb SINE Alu 0 312 1 33 43 0 0 chr1 153261539 153261586 -89402767 + AT_rich Low_complexity Low_complexity 1 47 0 1770 137 7 41 chr1 153261587 153261879 -89402474 - AluJb SINE Alu -29 283 2 261 0 0 0 chr1 153261879 153261908 -89402445 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 896 176 0 0 chr1 153261913 153262055 -89402298 - FRAM SINE Alu -30 146 5 1506 195 30 27 chr1 153262064 153262361 -89401992 - AluJo SINE Alu -14 298 1 1227 118 0 0 chr1 153262369 153262538 -89401815 - AluSg/x SINE Alu -15 297 129 1464 204 83 119 chr1 153265261 153265781 -89398572 - MLT1D LTR MaLR 0 505 5 1982 105 0 89 chr1 153265963 153266288 -89398065 - AluSx SINE Alu -16 296 1 1786 185 3 10 chr1 153266315 153266618 -89397735 + AluJo SINE Alu 1 301 -11 1667 183 0 35 chr1 153268211 153268528 -89395825 + AluJo SINE Alu 1 306 -6 2164 107 13 7 chr1 153268879 153269177 -89395176 + AluSx SINE Alu 1 300 -12 2012 136 3 10 chr1 153269304 153269612 -89394741 + AluSx SINE Alu 1 306 -6 330 151 65 0 chr1 153269624 153269763 -89394590 + (TA)n Simple_repeat Simple_repeat 1 148 0 206 283 0 33 chr1 153270614 153270674 -89393679 - L2 LINE L2 -5 3267 3210 180 0 0 0 chr1 153270796 153270816 -89393537 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 209 313 0 16 chr1 153271516 153271580 -89392773 - L2 LINE L2 -569 2745 2683 923 108 8 0 chr1 153271580 153271710 -89392643 + AluSg SINE Alu 1 131 -179 511 118 0 0 chr1 153271866 153271934 -89392419 + AluJ/FLAM SINE Alu 6 73 -239 511 88 0 0 chr1 153272034 153272102 -89392251 + Alu SINE Alu 235 302 -10 1182 160 0 15 chr1 153272267 153272341 -89392012 - AluJb SINE Alu -115 197 123 207 0 0 0 chr1 153272341 153272364 -89391989 + (TA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr1 153272365 153272385 -89391968 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1182 160 0 15 chr1 153272385 153272508 -89391845 - AluJb SINE Alu -188 124 1 2615 147 29 25 chr1 153272713 153273195 -89391158 + MER41B LTR ERV1 114 597 -38 1482 164 293 50 chr1 153273223 153273722 -89390631 + LTR29 LTR ERV1 3 622 0 2196 102 6 22 chr1 153273793 153274107 -89390246 - AluSc SINE Alu 0 309 1 1703 110 4 4 chr1 153274122 153274358 -89389995 - AluSx SINE Alu -76 236 1 396 0 0 0 chr1 153274392 153274436 -89389917 + (CA)n Simple_repeat Simple_repeat 1 44 0 570 189 20 98 chr1 153274438 153274591 -89389762 - MER21B LTR ERV1 -640 223 83 296 245 61 31 chr1 153274602 153274700 -89389653 - MER21B LTR ERV1 -752 111 11 649 136 164 0 chr1 153274914 153275024 -89389329 + FLAM_C SINE Alu 1 128 -5 215 235 20 0 chr1 153275090 153275141 -89389212 - MIR SINE MIR -101 161 110 666 244 0 0 chr1 153275741 153275864 -89388489 - FLAM_C SINE Alu -19 124 2 1915 178 58 164 chr1 153276460 153277257 -89387096 - LTR8A LTR ERV1 -15 712 1 420 234 109 16 chr1 153277262 153277390 -89386963 - MIR3 SINE MIR -37 171 32 461 317 74 45 chr1 153277492 153277633 -89386720 - MIR SINE MIR 0 262 110 2430 148 80 8 chr1 153277633 153278032 -89386321 - MSTA LTR MaLR 0 428 1 461 317 74 45 chr1 153278032 153278133 -89386220 - MIR SINE MIR -152 110 13 1754 187 7 0 chr1 153279227 153279532 -89384821 - AluJo SINE Alu -5 307 1 754 315 105 59 chr1 153279929 153280605 -89383748 + L2 LINE L2 1615 2321 -993 822 269 9 19 chr1 153280611 153280823 -89383530 - MER63A DNA MER1_type 0 210 1 687 323 47 71 chr1 153281078 153281734 -89382619 + L2 LINE L2 2619 3268 -4 2093 134 0 3 chr1 153282487 153282786 -89381567 + AluSx SINE Alu 1 298 -14 485 273 38 72 chr1 153282791 153283000 -89381353 - MIR SINE MIR -56 206 5 232 315 67 34 chr1 153284945 153285034 -89379319 + MER5A DNA MER1_type 1 92 -97 952 239 47 19 chr1 153285131 153285344 -89379009 + MER20 DNA MER1_type 1 219 0 243 186 47 0 chr1 153285872 153285915 -89378438 + MER3 DNA MER1_type 44 88 -121 182 33 67 0 chr1 153285916 153285946 -89378407 + (TTAAA)n Simple_repeat Simple_repeat 1 32 0 281 337 0 0 chr1 153286104 153286187 -89378166 + (CA)n Simple_repeat Simple_repeat 2 84 0 366 172 0 161 chr1 153286187 153286227 -89378126 + Tigger3(Golem) DNA MER2_type 11 29 -573 2287 123 0 0 chr1 153286227 153286536 -89377817 + AluSx SINE Alu 1 309 -3 366 172 0 161 chr1 153286536 153286588 -89377765 + Tigger3(Golem) DNA MER2_type 29 88 -514 2247 106 17 0 chr1 153286702 153286995 -89377358 - AluSx SINE Alu -14 298 1 862 244 95 36 chr1 153287043 153287379 -89376974 + MLT1C LTR MaLR 10 365 -102 2325 72 0 0 chr1 153287429 153287721 -89376632 - AluY SINE Alu -2 309 18 1395 179 13 4 chr1 153287735 153287970 -89376383 - AluJo SINE Alu -74 238 2 790 64 0 0 chr1 153287982 153288076 -89376277 - AluY SINE Alu -12 299 206 550 285 64 93 chr1 153288360 153288736 -89375617 - MLT1J LTR MaLR -144 367 3 1995 94 0 88 chr1 153289192 153289521 -89374832 - AluSx SINE Alu -12 300 1 984 293 76 59 chr1 153289521 153290040 -89374313 + MLT1H LTR MaLR 19 549 0 367 288 145 24 chr1 153290372 153290576 -89373777 - MIR SINE MIR -12 250 14 499 267 76 23 chr1 153290704 153290876 -89373477 + L2 LINE L2 3111 3291 -22 221 241 74 0 chr1 153291221 153291275 -89373078 + MIR SINE MIR 114 171 -91 296 292 18 77 chr1 153291348 153291516 -89372837 + L2 LINE L2 2517 2674 -640 847 274 109 52 chr1 153291536 153291591 -89372762 + L2 LINE L2 2825 2875 -438 2312 109 3 3 chr1 153291591 153291903 -89372450 - AluSp SINE Alu -1 312 1 847 274 109 52 chr1 153291903 153292260 -89372093 + L2 LINE L2 2875 3268 -45 2841 10 0 0 chr1 153292260 153292566 -89371787 + AluYa5 SINE Alu 4 309 -2 847 274 109 52 chr1 153292566 153292612 -89371741 + L2 LINE L2 3268 3310 -3 688 304 97 65 chr1 153292591 153293155 -89371198 + L2 LINE L2 2702 3265 -48 * 2378 122 48 20 chr1 153293527 153293881 -89370472 - THE1B LTR MaLR 0 364 1 12357 83 14 17 chr1 153293881 153295031 -89369322 - THE1B-int LTR MaLR 0 1580 434 2320 102 3 0 chr1 153295031 153295336 -89369017 - AluSp SINE Alu -3 310 5 12357 83 14 17 chr1 153295336 153295769 -89368584 - THE1B-int LTR MaLR -1146 434 1 3211 114 96 4 chr1 153295811 153296312 -89368041 - LTR10A LTR ERV1 -62 547 1 2481 109 51 11 chr1 153296361 153296711 -89367642 - THE1B LTR MaLR 0 364 1 2289 114 3 0 chr1 153297019 153297325 -89367028 + AluSg SINE Alu 1 307 -3 2326 88 3 0 chr1 153297738 153298034 -89366319 - AluSp SINE Alu -16 297 1 2397 93 3 0 chr1 153298150 153298462 -89365891 - AluSp SINE Alu 0 313 1 21 71 0 0 chr1 153298544 153298586 -89365767 + AT_rich Low_complexity Low_complexity 1 42 0 1722 154 3 59 chr1 153298737 153299042 -89365311 - AluJb SINE Alu -24 288 1 267 281 78 66 chr1 153299131 153299298 -89365055 + MIR SINE MIR 90 258 -4 21 0 0 0 chr1 153299301 153299322 -89365031 + AT_rich Low_complexity Low_complexity 1 21 0 952 110 0 0 chr1 153299660 153299787 -89364566 + AluSg SINE Alu 5 131 -179 214 198 236 9 chr1 153299898 153300004 -89364349 - L3b LINE CR1 -190 1393 1264 23 0 0 0 chr1 153300329 153300352 -89364001 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chr1 153302476 153302505 -89361848 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr1 153304735 153304773 -89359580 + AT_rich Low_complexity Low_complexity 1 38 0 378 0 0 0 chr1 153305316 153305358 -89358995 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr1 153306246 153306268 -89358085 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 153307121 153307142 -89357211 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr1 153307676 153307705 -89356648 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr1 153308283 153308314 -89356039 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 239 0 0 chr1 153310023 153310069 -89354284 + (TG)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chr1 153310435 153310457 -89353896 + AT_rich Low_complexity Low_complexity 1 22 0 264 299 37 110 chr1 153311955 153312028 -89352325 + MIR3 SINE MIR 53 109 -99 1087 243 32 4 chr1 153312028 153312279 -89352074 + MIR SINE MIR 5 262 0 264 299 37 110 chr1 153312279 153312369 -89351984 + MIR3 SINE MIR 109 204 -4 1831 123 51 0 chr1 153312424 153312717 -89351636 - AluSx SINE Alu -4 308 1 6728 59 4 2 chr1 153313068 153313910 -89350443 - L1PA7 LINE L1 0 6154 5312 2822 167 23 71 chr1 153314022 153314669 -89349684 - L1MB7 LINE L1 -11 6173 5558 321 75 0 38 chr1 153314678 153314731 -89349622 - L1MA10 LINE L1 -1 6333 6283 387 0 0 0 chr1 153314733 153314776 -89349577 + (TA)n Simple_repeat Simple_repeat 1 43 0 2052 125 35 0 chr1 153314778 153315066 -89349287 - AluSx SINE Alu -14 298 1 182 336 80 22 chr1 153315485 153315622 -89348731 + MIR SINE MIR 77 221 -41 862 91 68 23 chr1 153315941 153316117 -89348236 - Charlie5 DNA MER1_type -24 2588 2405 1396 135 28 82 chr1 153316128 153316344 -89348009 - MER33 DNA MER1_type -2297 288 93 2305 86 27 7 chr1 153316344 153316645 -89347708 - AluSx SINE Alu -4 308 2 1396 135 28 82 chr1 153316645 153316746 -89347607 - MER33 DNA MER1_type -2492 93 1 181 277 46 15 chr1 153317205 153317270 -89347083 + MIR SINE MIR 78 144 -118 2262 94 24 0 chr1 153317561 153317849 -89346504 + AluSx SINE Alu 2 296 -16 394 209 29 21 chr1 153322727 153322830 -89341523 - MIR SINE MIR -61 147 63 2391 81 0 7 chr1 153323143 153323441 -89340912 - AluSx SINE Alu -16 296 1 2217 108 0 7 chr1 153323444 153323739 -89340614 - AluSq SINE Alu -20 293 1 2493 77 0 0 chr1 153324089 153324386 -89339967 - AluSg SINE Alu -13 297 1 2436 86 0 3 chr1 153325281 153325584 -89338769 - AluSq SINE Alu -11 302 1 254 235 73 103 chr1 153326836 153326972 -89337381 + L2 LINE L2 3181 3312 -1 611 210 0 24 chr1 153327078 153327202 -89337151 + FLAM_A SINE Alu 1 121 -12 315 71 0 0 chr1 153327203 153327245 -89337108 + (GA)n Simple_repeat Simple_repeat 1 42 0 22 35 0 0 chr1 153327875 153327904 -89336449 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr1 153328812 153328838 -89335515 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 262 260 39 29 chr1 153330188 153330292 -89334061 + MIR3 SINE MIR 81 185 -23 243 0 0 0 chr1 153331335 153331362 -89332991 + (T)n Simple_repeat Simple_repeat 1 27 0 198 313 45 0 chr1 153332629 153332696 -89331657 - MIR SINE MIR -84 124 55 1794 161 7 17 chr1 153332788 153333087 -89331266 + AluJb SINE Alu 1 296 -16 1109 157 0 0 chr1 153333708 153333874 -89330479 - AluSg/x SINE Alu -13 299 134 2308 100 3 0 chr1 153333874 153334173 -89330180 - AluSx SINE Alu -12 300 1 203 288 0 0 chr1 153334944 153335003 -89329350 + G-rich Low_complexity Low_complexity 2 60 0 2143 129 0 7 chr1 153335816 153336119 -89328234 - AluSx SINE Alu -11 301 1 249 298 73 32 chr1 153336356 153336480 -89327873 + MIR SINE MIR 47 175 -87 187 156 0 0 chr1 153336988 153337020 -89327333 - MIR SINE MIR -112 150 119 192 241 0 37 chr1 153337089 153337143 -89327210 - MIR3 SINE MIR -8 200 149 2116 92 50 0 chr1 153337163 153337446 -89326907 - AluSq SINE Alu -16 297 1 1137 133 149 8 chr1 153337476 153337725 -89326628 - MER33 DNA MER1_type -40 284 1 233 236 0 0 chr1 153337725 153337780 -89326573 - MIR3 SINE MIR -48 160 106 255 256 151 23 chr1 153339099 153339295 -89325058 + MER102a DNA MER1_type 109 327 -3 418 118 40 13 chr1 153339307 153339383 -89324970 + MER20 DNA MER1_type 1 78 -141 239 304 11 11 chr1 153339762 153339854 -89324499 - MIR SINE MIR -77 131 40 41 0 0 0 chr1 153340667 153340708 -89323645 + AT_rich Low_complexity Low_complexity 1 41 0 1059 221 90 47 chr1 153340778 153341109 -89323244 - MSTD LTR MaLR 0 396 2 200 250 36 18 chr1 153341146 153341202 -89323151 + CT-rich Low_complexity Low_complexity 4 60 0 302 267 131 40 chr1 153341688 153341864 -89322489 - MIR SINE MIR -56 206 15 180 0 0 0 chr1 153341937 153341957 -89322396 + (T)n Simple_repeat Simple_repeat 1 20 0 34 0 0 0 chr1 153342107 153342141 -89322212 + AT_rich Low_complexity Low_complexity 1 34 0 922 91 0 0 chr1 153343114 153343235 -89321118 - AluSg/x SINE Alu -6 306 186 1105 196 15 0 chr1 153343523 153343727 -89320626 - AluSq SINE Alu -106 207 1 2451 81 10 7 chr1 153344133 153344441 -89319912 + AluSx SINE Alu 1 309 -3 2128 124 19 3 chr1 153347117 153347424 -89316929 - AluSx SINE Alu 0 312 1 225 113 0 113 chr1 153347615 153347668 -89316685 - L2 LINE L2 0 3313 3267 1649 135 0 0 chr1 153349391 153349621 -89314732 + AluSq SINE Alu 1 230 -83 299 100 0 0 chr1 153349624 153349664 -89314689 + AluSp/q SINE Alu 191 230 -73 679 150 0 0 chr1 153349667 153349767 -89314586 + AluSg/x SINE Alu 188 287 -22 516 207 57 29 chr1 153349808 153349948 -89314405 + L2 LINE L2 3169 3312 -1 425 327 141 18 chr1 153350377 153350873 -89313480 - L2 LINE L2 -584 2730 2174 267 146 0 0 chr1 153351136 153351177 -89313176 + MER117 DNA MER1_type 1 41 -156 339 194 16 0 chr1 153351311 153351373 -89312980 - L2 LINE L2 0 3272 3210 23 0 0 0 chr1 153352286 153352309 -89312044 + AT_rich Low_complexity Low_complexity 1 23 0 381 269 0 19 chr1 153352872 153352976 -89311377 + L2 LINE L2 3171 3272 0 2619 37 0 3 chr1 153354365 153354665 -89309688 - AluY SINE Alu -12 299 1 578 284 71 0 chr1 153355936 153356147 -89308206 + MIR SINE MIR 4 229 -33 235 218 0 18 chr1 153356246 153356301 -89308052 - L1MC/D LINE L1 -1884 5924 5871 345 344 83 18 chr1 153356447 153356665 -89307688 + L2 LINE L2 2864 3095 -177 325 305 28 21 chr1 153357319 153357460 -89306893 - MIR3 SINE MIR -7 201 60 2078 136 0 7 chr1 153357901 153358203 -89306150 - AluSx SINE Alu -12 300 1 794 277 12 16 chr1 153359894 153360136 -89304217 - MIR SINE MIR -1 261 21 364 214 124 41 chr1 153360645 153360790 -89303563 + MER103 DNA DNA 2 158 -8 1630 127 58 69 chr1 153363015 153363306 -89301047 + AluJb SINE Alu 1 288 -24 2160 113 0 0 chr1 153363800 153364105 -89300248 - AluSx SINE Alu 0 306 2 2331 82 0 0 chr1 153364125 153364406 -89299947 - AluSc SINE Alu -24 285 5 220 204 0 20 chr1 153365969 153366018 -89298335 + (CA)n Simple_repeat Simple_repeat 1 48 0 2259 93 35 0 chr1 153366027 153366316 -89298037 - AluSg SINE Alu -11 299 1 222 231 39 26 chr1 153366798 153366876 -89297477 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 287 338 40 0 chr1 153371560 153371711 -89292642 - MIR3 SINE MIR -8 200 44 21 0 0 0 chr1 153372013 153372034 -89292319 + AT_rich Low_complexity Low_complexity 1 21 0 252 260 119 4 chr1 153372724 153372863 -89291490 - MIR SINE MIR -41 167 3 373 299 124 0 chr1 153375022 153375159 -89289194 - MIR3 SINE MIR -14 194 41 2317 112 0 0 chr1 153375246 153375550 -89288803 - AluSx SINE Alu -8 304 1 916 229 55 28 chr1 153375747 153376000 -89288353 + MIR SINE MIR 3 262 0 217 273 45 57 chr1 153376042 153376130 -89288223 - L3 LINE CR1 -32 1545 1459 185 304 0 14 chr1 153379536 153379605 -89284748 + MIR SINE MIR 31 98 -110 183 100 0 0 chr1 153380670 153380700 -89283653 + (CA)n Simple_repeat Simple_repeat 2 31 0 300 324 66 7 chr1 153381094 153381230 -89283123 + MIR SINE MIR 11 154 -108 629 176 0 0 chr1 153381665 153381767 -89282586 + U6 snRNA snRNA 1 102 -5 1818 182 3 3 chr1 153381767 153382063 -89282290 - AluJb SINE Alu -16 296 1 2220 113 3 3 chr1 153382646 153382948 -89281405 - AluSq SINE Alu -3 310 9 213 250 39 0 chr1 153383330 153383382 -89280971 + GA-rich Low_complexity Low_complexity 1 54 0 181 266 64 43 chr1 153384363 153384457 -89279896 - MIR SINE MIR -80 128 33 192 294 29 15 chr1 153384803 153384871 -89279482 - L2 LINE L2 -64 3208 3140 180 0 0 0 chr1 153385718 153385738 -89278615 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 411 352 60 13 chr1 153385743 153385976 -89278377 - MIR SINE MIR -9 253 10 355 277 101 0 chr1 153387997 153388116 -89276237 + MIR SINE MIR 21 151 -57 207 271 123 8 chr1 153389513 153389635 -89274718 + MIR3 SINE MIR 62 197 -11 624 219 0 34 chr1 153389767 153389913 -89274440 + MER5B DNA MER1_type 2 142 -36 2522 60 0 3 chr1 153389914 153390213 -89274140 - AluY SINE Alu -13 298 1 383 293 24 6 chr1 153390608 153390757 -89273596 - MIR SINE MIR -59 149 16 2013 128 13 16 chr1 153392314 153392619 -89271734 - AluSq SINE Alu -4 309 6 306 0 0 0 chr1 153394029 153394063 -89270290 + (TG)n Simple_repeat Simple_repeat 2 35 0 1710 111 18 0 chr1 153394160 153394386 -89269967 - AluSc SINE Alu -17 292 63 391 311 22 12 chr1 153394552 153394716 -89269637 - MIR SINE MIR -39 169 7 728 247 76 30 chr1 153394776 153394966 -89269387 - L1ME2 LINE L1 -2 6162 5982 2041 137 10 0 chr1 153394966 153395259 -89269094 - AluSx SINE Alu -16 296 1 728 247 76 30 chr1 153395259 153395436 -89268917 - L1ME2 LINE L1 -182 5982 5759 1864 127 15 0 chr1 153395583 153395851 -89268502 + AluSq SINE Alu 1 272 -41 2419 99 3 0 chr1 153397194 153397506 -89266847 - AluSp SINE Alu 0 313 1 216 136 102 0 chr1 153398898 153398957 -89265396 + (TTATA)n Simple_repeat Simple_repeat 1 65 0 302 247 35 0 chr1 153400755 153400840 -89263513 + MIR SINE MIR 81 168 -94 848 232 31 13 chr1 153400842 153401071 -89263282 - MIR SINE MIR 0 262 31 465 248 23 31 chr1 153402015 153402144 -89262209 + LTR67 LTR ERVL 428 555 -2 2441 93 0 0 chr1 153403517 153403819 -89260534 - AluSx SINE Alu -10 302 1 25 0 0 0 chr1 153403926 153403951 -89260402 + AT_rich Low_complexity Low_complexity 1 25 0 345 344 83 18 chr1 153404633 153404851 -89259502 - L2 LINE L2 -177 3095 2864 235 218 0 18 chr1 153404997 153405052 -89259301 + L1MC/D LINE L1 5871 5924 -1884 569 286 71 0 chr1 153405151 153405361 -89258992 - MIR SINE MIR -33 229 5 2505 38 0 7 chr1 153406632 153406919 -89257434 + AluSc SINE Alu 1 285 -24 2304 112 0 0 chr1 153406939 153407244 -89257109 + AluSx SINE Alu 2 306 -6 936 221 75 5 chr1 153407744 153407943 -89256410 - AluJo SINE Alu -32 280 68 355 277 101 0 chr1 153409050 153409169 -89255184 + MIR SINE MIR 21 151 -57 207 271 123 8 chr1 153410567 153410689 -89253664 + MIR3 SINE MIR 62 197 -11 624 219 0 34 chr1 153410821 153410967 -89253386 + MER5B DNA MER1_type 2 142 -36 2522 60 0 3 chr1 153410968 153411267 -89253086 - AluY SINE Alu -13 298 1 383 293 24 6 chr1 153411662 153411811 -89252542 - MIR SINE MIR -59 149 16 2150 83 47 17 chr1 153413368 153413668 -89250685 - AluSq SINE Alu -4 309 1 1065 145 149 8 chr1 153413698 153413947 -89250406 - MER33 DNA MER1_type -40 284 1 233 236 0 0 chr1 153413947 153414002 -89250351 - MIR3 SINE MIR -48 160 106 385 145 40 13 chr1 153415529 153415605 -89248748 + MER20 DNA MER1_type 1 78 -141 250 279 0 12 chr1 153415984 153416070 -89248283 - MIR SINE MIR -132 130 46 2305 42 4 0 chr1 153417439 153417701 -89246652 - AluY SINE Alu -12 299 37 475 275 140 45 chr1 153418213 153418435 -89245918 - MIR SINE MIR 0 262 20 364 237 167 0 chr1 153418596 153418710 -89245643 + MIR SINE MIR 31 163 -99 339 260 31 16 chr1 153419322 153419449 -89244904 + MIR SINE MIR 81 209 -53 458 309 43 9 chr1 153420034 153420244 -89244109 + MER30 DNA MER1_type 14 230 0 21 0 0 0 chr1 153420274 153420295 -89244058 + AT_rich Low_complexity Low_complexity 1 21 0 249 108 0 0 chr1 153420324 153420361 -89243992 + (T)n Simple_repeat Simple_repeat 1 37 0 198 239 265 8 chr1 153421409 153421526 -89242827 - MIR SINE MIR -46 216 70 1805 163 31 0 chr1 153423696 153423985 -89240368 + AluJo SINE Alu 1 298 -14 210 213 21 0 chr1 153425126 153425173 -89239180 + (TA)n Simple_repeat Simple_repeat 1 48 0 721 258 30 49 chr1 153425175 153425439 -89238914 - MIR SINE MIR -2 260 2 474 304 52 11 chr1 153425502 153425693 -89238660 - MIR SINE MIR -1 261 63 208 349 0 0 chr1 153426712 153426778 -89237575 + (TG)n Simple_repeat Simple_repeat 2 67 0 207 377 100 0 chr1 153427952 153428183 -89236170 + L2 LINE L2 1192 1445 -1869 290 295 33 25 chr1 153429037 153429159 -89235194 - MIR3 SINE MIR -5 203 81 234 0 0 0 chr1 153430507 153430533 -89233820 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 355 194 19 111 chr1 153431589 153431697 -89232656 - MIR SINE MIR -62 200 103 562 155 0 10 chr1 153432189 153432286 -89232067 - L1PA16 LINE L1 -2 6164 6069 447 223 92 65 chr1 153432498 153432682 -89231671 - L3 LINE CR1 -198 1379 1191 1241 155 97 0 chr1 153432790 153432997 -89231356 + AluJo SINE Alu 1 227 -85 203 186 51 34 chr1 153433123 153433182 -89231171 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 1345 138 0 0 chr1 153433464 153433653 -89230700 + L1PA15 LINE L1 5974 6162 -3 407 212 8 93 chr1 153434207 153434325 -89230028 - L2 LINE L2 -15 3298 3191 263 315 120 0 chr1 153435083 153435191 -89229162 - MIR SINE MIR -114 148 28 315 314 66 8 chr1 153435254 153435375 -89228978 - MIR SINE MIR -95 167 40 1573 145 46 46 chr1 153435626 153435942 -89228411 - AluJo SINE Alu 0 316 1 363 252 31 16 chr1 153436789 153436916 -89227437 - MIR SINE MIR -53 209 81 364 237 167 0 chr1 153437528 153437642 -89226711 - MIR SINE MIR -99 163 31 475 275 140 45 chr1 153437803 153438025 -89226328 + MIR SINE MIR 20 262 0 2182 69 4 0 chr1 153438535 153438809 -89225544 + AluY SINE Alu 37 311 0 1999 146 7 7 chr1 153439103 153439412 -89224941 + AluJb SINE Alu 1 309 -3 279 157 0 0 chr1 153441116 153441167 -89223186 + T-rich Low_complexity Low_complexity 1 51 0 229 261 0 29 chr1 153441619 153441688 -89222665 + C-rich Low_complexity Low_complexity 1 67 0 903 144 24 0 chr1 153442317 153442442 -89221911 + FLAM_C SINE Alu 4 131 -2 187 330 10 58 chr1 153442609 153442712 -89221641 - MIR SINE MIR -59 203 106 2271 106 3 0 chr1 153442838 153443139 -89221214 - AluSx SINE Alu -9 303 2 1936 164 23 11 chr1 153443605 153443952 -89220401 + MER46B DNA MER2_type 11 236 0 189 345 0 0 chr1 153444166 153444224 -89220129 + L2 LINE L2 3212 3269 -3 302 336 62 0 chr1 153444409 153444522 -89219831 + L1MC4a LINE L1 5977 6096 -1712 317 326 75 41 chr1 153444623 153444770 -89219583 - MIR SINE MIR -63 199 48 244 328 118 15 chr1 153445948 153446152 -89218201 + L2 LINE L2 1904 2128 -1186 431 304 9 9 chr1 153446195 153446310 -89218043 + L2 LINE L2 3155 3269 -3 205 292 93 133 chr1 153446318 153446746 -89217607 + L2 LINE L2 2236 2646 -668 227 366 132 53 chr1 153447099 153447551 -89216802 + L2 LINE L2 2766 3251 -21 191 344 31 39 chr1 153447600 153447728 -89216625 + MIR SINE MIR 1 127 -135 279 239 125 0 chr1 153448308 153448396 -89215957 + L3 LINE CR1 1479 1577 0 376 324 65 18 chr1 153448733 153448903 -89215450 + MIR SINE MIR 11 188 -74 657 285 101 4 chr1 153448905 153449133 -89215220 - MIR SINE MIR 0 262 13 527 268 107 5 chr1 153450584 153450808 -89213545 - MIR SINE MIR -1 261 15 480 280 61 0 chr1 153452670 153452802 -89211551 + MIR SINE MIR 49 188 -74 236 293 192 0 chr1 153453291 153453390 -89210963 + MER5A DNA MER1_type 49 166 -23 1604 178 37 0 chr1 153454847 153455116 -89209237 - 7SLRNA srpRNA srpRNA -21 299 21 21 0 0 0 chr1 153456403 153456424 -89207929 + AT_rich Low_complexity Low_complexity 1 21 0 1376 162 9 5 chr1 153456860 153457076 -89207277 - MER20 DNA MER1_type -1 218 2 297 0 0 0 chr1 153459215 153459248 -89205105 + (TG)n Simple_repeat Simple_repeat 1 33 0 276 30 0 0 chr1 153459247 153459280 -89205073 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 452 242 102 123 chr1 153460134 153460215 -89204138 - MIR SINE MIR -10 252 171 1810 175 13 6 chr1 153460215 153460530 -89203823 - L1PA16 LINE L1 -3 6163 5847 452 242 102 123 chr1 153460530 153460692 -89203661 - MIR SINE MIR -91 171 14 388 284 63 16 chr1 153460720 153460847 -89203506 - L2 LINE L2 -1 3271 3139 391 283 0 10 chr1 153461868 153461967 -89202386 + MIR SINE MIR 164 261 -1 2385 100 3 0 chr1 153462220 153462531 -89201822 - AluSp SINE Alu 0 313 2 2390 84 0 0 chr1 153463086 153463384 -89200969 - AluY SINE Alu -13 298 1 22 0 0 0 chr1 153463996 153464018 -89200335 + AT_rich Low_complexity Low_complexity 1 22 0 282 206 0 29 chr1 153466055 153466123 -89198230 - MIR3 SINE MIR -3 205 140 231 316 194 32 chr1 153466561 153466716 -89197637 - MIR3 SINE MIR -6 202 23 212 250 18 0 chr1 153466771 153466827 -89197526 + MIR SINE MIR 97 153 -109 321 205 57 115 chr1 153466851 153466973 -89197380 + L2 LINE L2 3158 3272 0 370 305 38 0 chr1 153467368 153467473 -89196880 + L2 LINE L2 3205 3313 0 760 186 29 14 chr1 153468397 153468509 -89195844 + FLAM_C SINE Alu 2 118 -194 387 0 0 0 chr1 153468509 153468552 -89195801 + (CA)n Simple_repeat Simple_repeat 2 44 0 760 186 29 14 chr1 153468552 153468579 -89195774 + FLAM_C SINE Alu 118 143 -169 426 260 155 20 chr1 153469744 153469944 -89194409 - MIR SINE MIR -1 261 35 328 233 137 62 chr1 153471327 153471473 -89192880 + MER5B DNA MER1_type 22 178 0 198 0 0 0 chr1 153473252 153473274 -89191079 + (TG)n Simple_repeat Simple_repeat 2 23 0 566 258 16 0 chr1 153473672 153473800 -89190553 - L2 LINE L2 -15 3298 3169 225 231 0 0 chr1 153474425 153474464 -89189889 + C-rich Low_complexity Low_complexity 5 43 0 197 284 30 30 chr1 153474843 153474910 -89189443 - MIR3 SINE MIR -15 193 127 1457 120 37 5 chr1 153476198 153476415 -89187938 + MER30 DNA MER1_type 7 230 0 448 155 0 0 chr1 153476637 153476708 -89187645 + Alu SINE Alu 227 297 -13 894 130 0 0 chr1 153477495 153477672 -89186681 + (CCTG)n Simple_repeat Simple_repeat 2 178 0 192 179 0 0 chr1 153477690 153477729 -89186624 + CT-rich Low_complexity Low_complexity 3 41 0 191 333 12 0 chr1 153478593 153478677 -89185676 + MIR SINE MIR 67 151 -57 2376 104 51 23 chr1 153478978 153479332 -89185021 - THE1B LTR MaLR 0 364 1 31 68 0 0 chr1 153479577 153479636 -89184717 + AT_rich Low_complexity Low_complexity 1 59 0 2051 153 0 6 chr1 153479640 153479953 -89184400 - AluSx SINE Alu -1 311 1 334 293 33 47 chr1 153480203 153480353 -89184000 - LTR67 LTR ERVL -355 202 55 365 296 117 6 chr1 153481187 153481366 -89182987 - MIR SINE MIR -14 248 50 185 127 32 32 chr1 153481716 153481779 -89182574 + (TATAA)n Simple_repeat Simple_repeat 5 67 0 216 97 0 0 chr1 153481779 153481810 -89182543 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 57 0 0 chr1 153483234 153483269 -89181084 + AT_rich Low_complexity Low_complexity 1 35 0 478 223 115 0 chr1 153484184 153484323 -89180030 - L1 LINE L1 -3610 2536 2382 246 293 0 0 chr1 153486348 153486430 -89177923 + T-rich Low_complexity Low_complexity 1 82 0 211 244 0 0 chr1 153487279 153487324 -89177029 + T-rich Low_complexity Low_complexity 1 45 0 1301 83 0 0 chr1 153487835 153488004 -89176349 - AluSg/x SINE Alu -7 305 137 194 188 51 0 chr1 153488320 153488379 -89175974 - MIR SINE MIR -69 139 98 459 278 9 36 chr1 153489355 153489520 -89174833 - MIR SINE MIR -62 146 30 628 64 13 0 chr1 153489712 153489790 -89174563 + MADE1 DNA Mariner 2 80 0 320 290 47 19 chr1 153490988 153491095 -89173258 + MIR SINE MIR 13 122 -140 2798 16 0 0 chr1 153491453 153491759 -89172594 - AluYb8 SINE Alu -12 306 1 875 286 55 55 chr1 153494056 153494399 -89169954 + MLT1J LTR MaLR 64 406 -105 293 265 83 38 chr1 153494491 153494623 -89169730 + MIR SINE MIR 84 221 -41 21 0 0 0 chr1 153495550 153495571 -89168782 + AT_rich Low_complexity Low_complexity 1 21 0 2573 37 3 0 chr1 153495847 153496142 -89168211 + AluY SINE Alu 1 296 -15 553 164 8 8 chr1 153497106 153497228 -89167125 + GA-rich Low_complexity Low_complexity 3 124 0 373 304 73 27 chr1 153498427 153498647 -89165706 - L1ME3A LINE L1 -8 6162 5933 340 213 0 0 chr1 153498704 153498765 -89165588 - L2 LINE L2 0 3313 3253 23 0 0 0 chr1 153499873 153499896 -89164457 + AT_rich Low_complexity Low_complexity 1 23 0 239 304 59 44 chr1 153500396 153500531 -89163822 + L2 LINE L2 3169 3305 -8 228 67 0 0 chr1 153501569 153501599 -89162754 + (T)n Simple_repeat Simple_repeat 1 30 0 1792 114 46 0 chr1 153502149 153502411 -89161942 + AluSp SINE Alu 1 274 -39 237 178 0 0 chr1 153502894 153502939 -89161414 + (CA)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr1 153504355 153504378 -89159975 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 153505070 153505102 -89159251 + AT_rich Low_complexity Low_complexity 1 32 0 396 0 0 0 chr1 153505351 153505395 -89158958 + (CA)n Simple_repeat Simple_repeat 1 44 0 1961 179 72 60 chr1 153505561 153505720 -89158633 - Charlie1b DNA MER1_type -2238 523 367 2195 107 3 3 chr1 153505720 153506020 -89158333 + AluSx SINE Alu 1 300 -12 1961 179 72 60 chr1 153506020 153506269 -89158084 - Charlie1b DNA MER1_type -2394 367 106 2420 84 3 0 chr1 153506269 153506568 -89157785 - AluSx SINE Alu -12 300 1 1961 179 72 60 chr1 153506568 153506644 -89157709 - Charlie1b DNA MER1_type -2655 106 32 324 0 0 0 chr1 153507419 153507455 -89156898 + (CA)n Simple_repeat Simple_repeat 2 37 0 1424 147 16 25 chr1 153507480 153507725 -89156628 - AluJo SINE Alu -10 302 60 198 143 0 0 chr1 153507901 153507936 -89156417 + (TCCA)n Simple_repeat Simple_repeat 2 36 0 187 300 40 0 chr1 153510029 153510079 -89154274 - MIR SINE MIR -87 121 70 233 164 15 75 chr1 153510231 153510298 -89154055 + L1MC4 LINE L1 6640 6702 -1340 260 304 104 39 chr1 153510749 153510979 -89153374 + L2 LINE L2 1831 2075 -1239 218 264 92 35 chr1 153511083 153511170 -89153183 + L2 LINE L2 3136 3227 -45 23 68 0 0 chr1 153511574 153511618 -89152735 + AT_rich Low_complexity Low_complexity 1 44 0 294 282 14 0 chr1 153512400 153512471 -89151882 - L2 LINE L2 -5 3267 3196 2031 193 28 133 chr1 153515220 153515319 -89149034 - L1ME1 LINE L1 -2 6164 6056 2284 114 13 0 chr1 153515319 153515627 -89148726 - AluSx SINE Alu 0 312 1 2031 193 28 133 chr1 153515627 153516156 -89148197 - L1ME1 LINE L1 -110 6056 5611 1243 186 89 30 chr1 153516156 153516425 -89147928 - AluJo SINE Alu -26 286 2 2031 193 28 133 chr1 153516425 153516479 -89147874 - L1ME1 LINE L1 -555 5611 5553 339 85 0 0 chr1 153517596 153517643 -89146710 + (TG)n Simple_repeat Simple_repeat 2 48 0 194 234 128 0 chr1 153518231 153518278 -89146075 - L2 LINE L2 -86 3186 3134 321 234 0 16 chr1 153518442 153518506 -89145847 - L2 LINE L2 -17 3255 3193 210 311 311 0 chr1 153518509 153518615 -89145738 - L2 LINE L2 0 3272 3134 354 61 0 0 chr1 153519577 153519626 -89144727 + (TG)n Simple_repeat Simple_repeat 2 50 0 2121 134 0 0 chr1 153520110 153520400 -89143953 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr1 153521168 153521204 -89143149 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 153521491 153521512 -89142841 + AT_rich Low_complexity Low_complexity 1 21 0 678 273 39 71 chr1 153521590 153521872 -89142481 - MLT1J LTR MaLR -230 281 9 260 241 0 0 chr1 153522450 153522508 -89141845 + L2 LINE L2 3241 3298 -15 366 281 52 15 chr1 153522838 153522973 -89141380 - MIR SINE MIR -74 188 49 1815 122 0 0 chr1 153524220 153524466 -89139887 - AluSx SINE Alu -5 307 62 676 88 0 0 chr1 153524466 153524557 -89139796 - AluSg SINE Alu -218 92 2 214 298 53 0 chr1 153524843 153524937 -89139416 - MIR SINE MIR -62 200 102 730 268 32 27 chr1 153526330 153526550 -89137803 - MIR SINE MIR -6 256 36 21 0 0 0 chr1 153526714 153526735 -89137618 + AT_rich Low_complexity Low_complexity 1 21 0 250 247 14 14 chr1 153527330 153527403 -89136950 - MIR SINE MIR -107 101 29 2148 92 24 10 chr1 153527484 153527801 -89136552 - AluSg SINE Alu 0 335 15 800 237 24 0 chr1 153527991 153528160 -89136193 - MER45A DNA AcHobo 0 178 6 196 340 99 7 chr1 153528982 153529123 -89135230 - MIR3 SINE MIR -52 156 3 2009 136 3 7 chr1 153529574 153529869 -89134484 + AluSx SINE Alu 17 310 -2 291 54 0 0 chr1 153534023 153534060 -89130293 + (CA)n Simple_repeat Simple_repeat 2 38 0 324 0 0 0 chr1 153537686 153537722 -89126631 + (TG)n Simple_repeat Simple_repeat 1 36 0 333 0 0 0 chr1 153537729 153537766 -89126587 + (GA)n Simple_repeat Simple_repeat 1 37 0 1865 140 45 0 chr1 153537940 153538226 -89126127 + AluSx SINE Alu 1 299 -13 1963 153 24 0 chr1 153539148 153539443 -89124910 + AluJb SINE Alu 1 302 -10 352 202 106 19 chr1 153539712 153539816 -89124537 + MIR SINE MIR 76 188 -74 676 36 0 0 chr1 153539829 153539912 -89124441 - AluY SINE Alu -11 300 218 262 106 21 0 chr1 153542822 153542869 -89121484 - MLT1J LTR MaLR -35 476 429 23 0 0 0 chr1 153543746 153543769 -89120584 + AT_rich Low_complexity Low_complexity 1 23 0 186 191 0 0 chr1 153544174 153544216 -89120137 + (TG)n Simple_repeat Simple_repeat 2 43 0 251 122 0 24 chr1 153545510 153545551 -89118802 + L2 LINE L2 3258 3297 -16 2351 91 0 0 chr1 153547444 153547742 -89116611 - AluY SINE Alu -13 298 1 22 0 0 0 chr1 153548358 153548380 -89115973 + AT_rich Low_complexity Low_complexity 1 22 0 2166 112 26 47 chr1 153549024 153549407 -89114946 + THE1C LTR MaLR 1 375 0 183 42 0 0 chr1 153550125 153550149 -89114204 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2146 112 3 0 chr1 153550151 153550436 -89113917 - AluSg SINE Alu -24 286 1 316 253 13 0 chr1 153557727 153557806 -89106547 + CT-rich Low_complexity Low_complexity 2 81 0 879 150 154 95 chr1 153559016 153559076 -89105277 - L1MB3 LINE L1 -2 6181 6126 1806 82 4 31 chr1 153559076 153559333 -89105020 - AluSc SINE Alu -35 274 25 879 150 154 95 chr1 153559333 153559525 -89104828 - L1MB3 LINE L1 -57 6126 5914 210 71 0 0 chr1 153559837 153559865 -89104488 + (CGG)n Simple_repeat Simple_repeat 1 28 0 2291 128 0 0 chr1 153561022 153561407 -89102946 - AluSx SINE Alu 0 385 1 265 325 26 26 chr1 153562360 153562477 -89101876 - MIR SINE MIR -99 163 47 2112 101 31 0 chr1 153563252 153563539 -89100814 - AluY SINE Alu -14 297 2 594 231 49 7 chr1 153565003 153565181 -89099172 - MIR SINE MIR -59 203 4 301 281 37 22 chr1 153565794 153565929 -89098424 + MIR3 SINE MIR 51 187 -21 2593 48 0 3 chr1 153566441 153566751 -89097602 + AluY SINE Alu 1 309 -2 1665 176 39 21 chr1 153569405 153569741 -89094612 - MLT1E1 LTR MaLR 0 654 313 260 218 18 0 chr1 153569767 153569822 -89094531 - MLT1E1 LTR MaLR -438 216 161 270 0 0 0 chr1 153569995 153570025 -89094328 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 189 346 10 69 chr1 153570372 153570473 -89093880 - L2 LINE L2 -23 3249 3155 262 327 136 9 chr1 153570649 153570759 -89093594 - L2 LINE L2 -9 3263 3140 385 318 9 9 chr1 153571043 153571153 -89093200 + MIR SINE MIR 41 150 -112 743 179 0 67 chr1 153571655 153571834 -89092519 - MER3 DNA MER1_type -41 168 2 183 80 0 0 chr1 153572036 153572061 -89092292 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 234 282 256 19 chr1 153573817 153573973 -89090380 + MIR SINE MIR 4 196 -66 2293 107 0 0 chr1 153574209 153574500 -89089853 + AluSg SINE Alu 1 291 -19 21 0 0 0 chr1 153576368 153576389 -89087964 + AT_rich Low_complexity Low_complexity 1 21 0 638 249 96 28 chr1 153577066 153577243 -89087110 + MER5A DNA MER1_type 1 189 0 305 336 97 13 chr1 153577244 153577470 -89086883 + L2 LINE L2 2164 2408 -906 388 242 102 123 chr1 153628295 153628376 -89035977 - MIR SINE MIR -10 252 171 1711 175 13 6 chr1 153628376 153628691 -89035662 - L1PA16 LINE L1 -3 6163 5847 388 242 102 123 chr1 153628691 153628853 -89035500 - MIR SINE MIR -91 171 14 348 284 63 16 chr1 153628881 153629008 -89035345 - L2 LINE L2 -1 3271 3139 365 283 0 10 chr1 153630029 153630128 -89034225 + MIR SINE MIR 164 261 -1 2384 103 3 0 chr1 153630381 153630692 -89033661 - AluSp SINE Alu 0 313 2 2412 84 0 0 chr1 153631372 153631670 -89032683 - AluY SINE Alu -13 298 1 22 0 0 0 chr1 153632282 153632304 -89032049 + AT_rich Low_complexity Low_complexity 1 22 0 260 206 0 29 chr1 153634341 153634409 -89029944 - MIR3 SINE MIR -3 205 140 184 316 194 32 chr1 153634847 153635002 -89029351 - MIR3 SINE MIR -6 202 23 196 250 18 0 chr1 153635057 153635113 -89029240 + MIR SINE MIR 97 153 -109 282 205 57 115 chr1 153635137 153635259 -89029094 + L2 LINE L2 3158 3272 0 339 305 38 0 chr1 153635654 153635759 -89028594 + L2 LINE L2 3205 3313 0 715 186 29 14 chr1 153636683 153636795 -89027558 + FLAM_C SINE Alu 2 118 -194 387 0 0 0 chr1 153636795 153636838 -89027515 + (CA)n Simple_repeat Simple_repeat 2 44 0 715 186 29 14 chr1 153636838 153636865 -89027488 + FLAM_C SINE Alu 118 143 -169 365 260 155 20 chr1 153638030 153638230 -89026123 - MIR SINE MIR -1 261 35 294 229 55 65 chr1 153639613 153639759 -89024594 + MER5B DNA MER1_type 22 189 0 198 0 0 0 chr1 153641536 153641558 -89022795 + (TG)n Simple_repeat Simple_repeat 2 23 0 524 258 16 0 chr1 153641956 153642084 -89022269 - L2 LINE L2 -15 3298 3169 225 231 0 0 chr1 153642709 153642748 -89021605 + C-rich Low_complexity Low_complexity 5 43 0 1456 120 37 5 chr1 153644483 153644700 -89019653 + MER30 DNA MER1_type 7 230 0 360 0 0 0 chr1 153644779 153644819 -89019534 + (T)n Simple_repeat Simple_repeat 1 40 0 1821 163 31 0 chr1 153648152 153648441 -89015912 + AluJo SINE Alu 1 298 -14 210 213 21 0 chr1 153649582 153649629 -89014724 + (TA)n Simple_repeat Simple_repeat 1 48 0 681 271 27 38 chr1 153649631 153649893 -89014460 - MIR SINE MIR -2 260 2 423 304 52 11 chr1 153649956 153650147 -89014206 - MIR SINE MIR -1 261 63 208 349 0 0 chr1 153651166 153651232 -89013121 + (TG)n Simple_repeat Simple_repeat 2 67 0 262 106 21 0 chr1 153655254 153655301 -89009052 - MLT1J LTR MaLR -35 476 429 23 0 0 0 chr1 153656178 153656201 -89008152 + AT_rich Low_complexity Low_complexity 1 23 0 186 191 0 0 chr1 153656606 153656648 -89007705 + (TG)n Simple_repeat Simple_repeat 2 43 0 251 122 0 24 chr1 153657942 153657983 -89006370 + L2 LINE L2 3258 3297 -16 252 0 0 0 chr1 153659900 153659928 -89004425 + (TG)n Simple_repeat Simple_repeat 1 28 0 316 253 13 0 chr1 153663841 153663920 -89000433 + CT-rich Low_complexity Low_complexity 2 81 0 254 89 0 0 chr1 153665130 153665175 -88999178 - L1MB4 LINE L1 0 6180 6136 2092 68 4 29 chr1 153665190 153665471 -88998882 - AluSc SINE Alu -35 274 1 946 163 22 22 chr1 153665494 153665672 -88998681 - AluJo SINE Alu -14 298 121 262 283 38 44 chr1 153666206 153666365 -88997988 + L2 LINE L2 1831 1988 -1326 184 264 69 0 chr1 153666539 153666611 -88997742 + L2 LINE L2 3173 3249 -64 23 68 0 0 chr1 153667031 153667075 -88997278 + AT_rich Low_complexity Low_complexity 1 44 0 271 282 14 0 chr1 153667857 153667928 -88996425 - L2 LINE L2 -5 3267 3196 1997 193 28 133 chr1 153670677 153670776 -88993577 - L1ME1 LINE L1 -2 6164 6056 2308 114 13 0 chr1 153670776 153671084 -88993269 - AluSx SINE Alu 0 312 1 1997 193 28 133 chr1 153671084 153671613 -88992740 - L1ME1 LINE L1 -110 6056 5611 1251 186 89 30 chr1 153671613 153671882 -88992471 - AluJo SINE Alu -26 286 2 1997 193 28 133 chr1 153671882 153671936 -88992417 - L1ME1 LINE L1 -555 5611 5553 339 85 0 0 chr1 153673053 153673100 -88991253 + (TG)n Simple_repeat Simple_repeat 2 48 0 194 234 128 0 chr1 153673688 153673735 -88990618 - L2 LINE L2 -86 3186 3134 321 234 0 16 chr1 153673899 153673963 -88990390 - L2 LINE L2 -17 3255 3193 201 246 33 0 chr1 153673966 153674027 -88990326 - L2 LINE L2 0 3313 3251 354 61 0 0 chr1 153675145 153675194 -88989159 + (TG)n Simple_repeat Simple_repeat 2 50 0 2105 134 0 0 chr1 153675678 153675968 -88988385 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr1 153676736 153676772 -88987581 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 153677059 153677080 -88987273 + AT_rich Low_complexity Low_complexity 1 21 0 689 273 39 71 chr1 153677158 153677440 -88986913 - MLT1J LTR MaLR -230 281 9 279 241 0 0 chr1 153678018 153678076 -88986277 + L2 LINE L2 3241 3298 -15 429 274 52 15 chr1 153678406 153678541 -88985812 - MIR SINE MIR -74 188 49 1800 122 0 0 chr1 153679788 153680034 -88984319 - AluSx SINE Alu -5 307 62 717 88 0 0 chr1 153680034 153680125 -88984228 - AluSg SINE Alu -218 92 2 332 335 67 11 chr1 153680411 153680590 -88983763 - MIR SINE MIR -62 200 12 233 164 15 75 chr1 153680721 153680788 -88983565 - L1MC4 LINE L1 -1340 6702 6640 187 300 40 0 chr1 153680940 153680990 -88983363 + MIR SINE MIR 70 121 -87 189 147 0 0 chr1 153683083 153683117 -88981236 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 1412 151 16 25 chr1 153683294 153683539 -88980814 + AluJo SINE Alu 60 302 -10 324 0 0 0 chr1 153683564 153683600 -88980753 + (TG)n Simple_repeat Simple_repeat 2 37 0 1961 179 72 60 chr1 153684374 153684450 -88979903 + Charlie1b DNA MER1_type 32 106 -2655 2420 84 3 0 chr1 153684450 153684749 -88979604 + AluSx SINE Alu 1 300 -12 1961 179 72 60 chr1 153684749 153684998 -88979355 + Charlie1b DNA MER1_type 106 367 -2394 2195 107 3 3 chr1 153684998 153685298 -88979055 - AluSx SINE Alu -12 300 1 1961 179 72 60 chr1 153685298 153685457 -88978896 + Charlie1b DNA MER1_type 367 523 0 396 0 0 0 chr1 153685623 153685667 -88978686 + (TG)n Simple_repeat Simple_repeat 1 44 0 25 31 0 0 chr1 153685916 153685948 -88978405 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 153686640 153686663 -88977690 + AT_rich Low_complexity Low_complexity 1 23 0 237 178 0 0 chr1 153688079 153688124 -88976229 + (TG)n Simple_repeat Simple_repeat 1 45 0 1792 114 46 0 chr1 153688607 153688869 -88975484 - AluSp SINE Alu -39 274 1 228 67 0 0 chr1 153689419 153689449 -88974904 + (A)n Simple_repeat Simple_repeat 1 30 0 239 304 59 44 chr1 153690487 153690622 -88973731 - L2 LINE L2 -8 3305 3169 23 0 0 0 chr1 153691122 153691145 -88973208 + AT_rich Low_complexity Low_complexity 1 23 0 340 213 0 0 chr1 153692253 153692314 -88972039 + L2 LINE L2 3253 3313 0 373 304 73 27 chr1 153692371 153692591 -88971762 + L1ME3A LINE L1 5933 6162 -8 553 164 8 8 chr1 153693790 153693912 -88970441 + CT-rich Low_complexity Low_complexity 3 124 0 2573 37 3 0 chr1 153694876 153695171 -88969182 - AluY SINE Alu -15 296 1 21 0 0 0 chr1 153695447 153695468 -88968885 + AT_rich Low_complexity Low_complexity 1 21 0 293 265 83 38 chr1 153696395 153696527 -88967826 - MIR SINE MIR -41 221 84 875 286 55 55 chr1 153696619 153696962 -88967391 - MLT1J LTR MaLR -105 406 64 794 268 32 27 chr1 153698972 153699192 -88965161 - MIR SINE MIR -6 256 36 192 252 63 81 chr1 153699362 153699473 -88964880 - L2 LINE L2 -10 3303 3195 278 263 11 53 chr1 153699950 153700045 -88964308 - MIR SINE MIR -89 119 29 2135 92 24 10 chr1 153700126 153700443 -88963910 - AluSg SINE Alu 0 335 15 800 243 23 0 chr1 153700633 153700806 -88963547 - MER45A DNA AcHobo 0 178 2 242 340 99 7 chr1 153701624 153701765 -88962588 - MIR3 SINE MIR -52 156 3 1995 136 3 7 chr1 153702216 153702511 -88961842 + AluSx SINE Alu 17 310 -2 191 253 53 40 chr1 153702914 153702989 -88961364 + MIR SINE MIR 117 192 -70 190 217 33 35 chr1 153703686 153703746 -88960607 - MIR SINE MIR -97 111 59 711 36 0 0 chr1 153704368 153704451 -88959902 + AluY SINE Alu 218 300 -11 386 202 106 19 chr1 153704464 153704568 -88959785 - MIR SINE MIR -74 188 76 1944 153 24 0 chr1 153704837 153705132 -88959221 - AluJb SINE Alu -10 302 1 1836 140 45 0 chr1 153706054 153706340 -88958013 - AluSx SINE Alu -13 299 1 333 0 0 0 chr1 153706514 153706551 -88957802 + (TC)n Simple_repeat Simple_repeat 1 37 0 324 0 0 0 chr1 153706558 153706594 -88957759 + (CA)n Simple_repeat Simple_repeat 1 36 0 291 54 0 0 chr1 153709327 153709364 -88954989 + (CA)n Simple_repeat Simple_repeat 2 38 0 210 71 0 0 chr1 153711628 153711656 -88952697 + (CGG)n Simple_repeat Simple_repeat 1 28 0 2278 128 0 0 chr1 153712813 153713198 -88951155 - AluSx SINE Alu 0 385 1 293 325 26 26 chr1 153714151 153714268 -88950085 - MIR SINE MIR -99 163 47 2096 101 31 0 chr1 153715043 153715330 -88949023 - AluY SINE Alu -14 297 2 641 226 62 6 chr1 153716794 153716972 -88947381 - MIR SINE MIR -59 203 4 183 265 153 10 chr1 153717065 153717163 -88947190 - MIR SINE MIR -65 143 32 343 281 37 22 chr1 153717705 153717840 -88946513 + MIR3 SINE MIR 51 187 -21 2567 48 0 3 chr1 153718352 153718662 -88945691 + AluY SINE Alu 1 309 -2 1656 176 39 21 chr1 153721316 153721652 -88942701 - MLT1E1 LTR MaLR 0 654 313 263 218 18 0 chr1 153721678 153721733 -88942620 - MLT1E1 LTR MaLR -438 216 161 270 0 0 0 chr1 153721906 153721936 -88942417 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 218 346 10 69 chr1 153722283 153722384 -88941969 - L2 LINE L2 -23 3249 3155 263 327 136 9 chr1 153722560 153722670 -88941683 - L2 LINE L2 -9 3263 3140 380 318 9 9 chr1 153722954 153723064 -88941289 + MIR SINE MIR 41 150 -112 825 179 0 67 chr1 153723566 153723745 -88940608 - MER3 DNA MER1_type -41 168 2 183 80 0 0 chr1 153723947 153723972 -88940381 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 234 282 256 19 chr1 153725728 153725884 -88938469 + MIR SINE MIR 4 196 -66 1797 107 0 36 chr1 153726120 153726400 -88937953 + AluSg SINE Alu 1 270 -40 21 0 0 0 chr1 153728178 153728199 -88936154 + AT_rich Low_complexity Low_complexity 1 21 0 638 249 96 28 chr1 153728876 153729053 -88935300 + MER5A DNA MER1_type 1 189 0 305 336 97 13 chr1 153729054 153729280 -88935073 + L2 LINE L2 2164 2408 -906 2116 112 3 0 chr1 153733562 153733873 -88930480 + AluSg SINE Alu 1 312 0 2123 112 26 47 chr1 153734591 153734974 -88929379 - THE1C LTR MaLR 0 375 1 965 227 5 19 chr1 153735650 153735866 -88928487 + MER20 DNA MER1_type 6 218 -1 213 39 0 0 chr1 153735882 153735908 -88928445 + (TTA)n Simple_repeat Simple_repeat 2 27 0 205 186 0 0 chr1 153735930 153735973 -88928380 + T-rich Low_complexity Low_complexity 1 43 0 249 33 0 0 chr1 153738412 153738442 -88925911 + (TTA)n Simple_repeat Simple_repeat 1 30 0 217 333 137 0 chr1 153741628 153741730 -88922623 + L3 LINE CR1 974 1089 -488 732 329 98 25 chr1 153741757 153742116 -88922237 + L3 LINE CR1 1169 1553 -24 184 382 39 10 chr1 153743948 153744050 -88920303 + L2 LINE L2 2560 2664 -650 194 278 93 52 chr1 153744452 153744549 -88919804 + L2 LINE L2 3213 3313 0 246 245 117 11 chr1 153745159 153745253 -88919100 + MIR3 SINE MIR 99 202 -6 2279 125 0 0 chr1 153745495 153745807 -88918546 - AluSx SINE Alu 0 312 1 318 132 0 0 chr1 153746888 153746941 -88917412 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 258 81 0 0 chr1 153747355 153747392 -88916961 + (TG)n Simple_repeat Simple_repeat 2 38 0 260 337 20 10 chr1 153747413 153747511 -88916842 + MIR3 SINE MIR 82 180 -28 572 167 0 9 chr1 153748572 153748680 -88915673 + MER3 DNA MER1_type 5 111 -98 1898 101 54 7 chr1 153748682 153748978 -88915375 + L1PA11 LINE L1 5865 6174 0 429 223 0 9 chr1 153749145 153749257 -88915096 + MER3 DNA MER1_type 99 209 0 238 262 0 0 chr1 153749203 153749264 -88915089 - MER3 DNA MER1_type -108 101 41 * 21 0 0 0 chr1 153749351 153749372 -88914981 + AT_rich Low_complexity Low_complexity 1 21 0 490 235 208 0 chr1 153749979 153750128 -88914225 + MER5A DNA MER1_type 10 189 0 2249 72 0 4 chr1 153750564 153750843 -88913510 - AluY SINE Alu -4 307 30 28 71 0 0 chr1 153751804 153751860 -88912493 + AT_rich Low_complexity Low_complexity 1 56 0 225 235 176 0 chr1 153752213 153752281 -88912072 - MIR SINE MIR -2 260 181 225 304 152 18 chr1 153752793 153752905 -88911448 + L2 LINE L2 3137 3263 -9 234 242 0 0 chr1 153753313 153753379 -88910974 + (CAGT)n Simple_repeat Simple_repeat 4 69 0 1835 156 3 3 chr1 153753391 153753673 -88910680 - AluSx SINE Alu -30 282 1 195 321 24 0 chr1 153753679 153753763 -88910590 + MIR3 SINE MIR 117 202 -6 1271 313 117 37 chr1 153755224 153755953 -88908400 - L3 LINE CR1 -80 1497 711 587 292 51 10 chr1 153756016 153756211 -88908142 - MIR SINE MIR -54 208 6 454 326 165 21 chr1 153756214 153756601 -88907752 - L3 LINE CR1 -905 672 230 2210 127 3 0 chr1 153757518 153757826 -88906527 - AluSx SINE Alu -3 309 1 274 297 102 8 chr1 153758041 153758169 -88906184 - MIR3 SINE MIR -5 203 64 194 0 39 0 chr1 153758324 153758350 -88906003 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1931 141 14 0 chr1 153758353 153758629 -88905724 - AluJo SINE Alu -30 282 3 21 0 0 0 chr1 153759012 153759033 -88905320 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 153759131 153759152 -88905201 + AT_rich Low_complexity Low_complexity 1 21 0 326 234 13 0 chr1 153759545 153759622 -88904731 - MIR SINE MIR -6 256 179 494 264 43 91 chr1 153759977 153760185 -88904168 - MIR SINE MIR -5 257 60 2136 133 0 0 chr1 153760368 153760662 -88903691 + AluSx SINE Alu 1 294 -18 912 213 30 60 chr1 153760705 153761038 -88903315 - L1ME1 LINE L1 -5 6161 5839 582 286 97 0 chr1 153761107 153761303 -88903050 + MIR SINE MIR 31 245 -17 35 0 0 0 chr1 153761308 153761343 -88903010 + AT_rich Low_complexity Low_complexity 1 35 0 344 287 238 17 chr1 153761414 153761595 -88902758 - MIR SINE MIR -32 230 10 350 273 139 21 chr1 153762458 153762645 -88901708 - L2 LINE L2 -947 2367 2159 220 357 71 10 chr1 153763174 153763272 -88901081 - L2 LINE L2 -2 3270 3167 801 103 0 0 chr1 153764276 153764393 -88899960 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 307 111 16 32 chr1 153764526 153764589 -88899764 + (GGAAA)n Simple_repeat Simple_repeat 4 65 0 439 282 24 32 chr1 153765049 153765173 -88899180 - MIR3 SINE MIR -49 159 37 24 67 0 0 chr1 153765522 153765567 -88898786 + AT_rich Low_complexity Low_complexity 1 45 0 739 203 0 0 chr1 153765567 153765685 -88898668 - FLAM_C SINE Alu -15 118 1 243 0 0 0 chr1 153765787 153765814 -88898539 + (CTATG)n Simple_repeat Simple_repeat 2 28 0 191 243 135 0 chr1 153765841 153765915 -88898438 + MIR3 SINE MIR 111 194 -14 638 279 25 6 chr1 153766980 153767138 -88897215 + MIR SINE MIR 51 211 -51 351 295 14 22 chr1 153767562 153767701 -88896652 - 7SK RNA RNA -42 151 14 554 338 68 8 chr1 153767942 153768176 -88896177 - MIR SINE MIR -11 251 4 251 306 116 20 chr1 153768340 153768487 -88895866 + MIR3 SINE MIR 16 176 -32 361 230 230 16 chr1 153768517 153768643 -88895710 + MIR SINE MIR 25 177 -85 * 1092 249 84 22 chr1 153768625 153768994 -88895359 + L2 LINE L2 2922 3313 0 183 323 0 15 chr1 153769000 153769065 -88895288 + MIR SINE MIR 189 252 -10 285 367 65 7 chr1 153769302 153769441 -88894912 + L3 LINE CR1 1331 1477 -100 3584 329 47 26 chr1 153769520 153770738 -88893615 + HERV16 LTR ERVL 1585 2776 -2709 1792 178 23 0 chr1 153770738 153771041 -88893312 + AluJb SINE Alu 3 312 0 3584 329 47 26 chr1 153771041 153773032 -88891321 + HERV16 LTR ERVL 2776 4889 -596 612 188 0 0 chr1 153773458 153773570 -88890783 + MLT2B2 LTR ERVL 1 112 -403 2418 68 0 0 chr1 153773609 153773903 -88890450 + AluY SINE Alu 11 304 -7 1032 238 22 75 chr1 153773946 153774451 -88889902 + MLT2B1 LTR ERVL 113 520 0 204 40 0 0 chr1 153774508 153774533 -88889820 + (T)n Simple_repeat Simple_repeat 1 25 0 261 208 0 0 chr1 153775587 153775659 -88888694 + (CA)n Simple_repeat Simple_repeat 2 73 0 331 247 82 0 chr1 153776632 153776705 -88887648 - MIR3 SINE MIR -9 199 121 579 266 30 45 chr1 153776720 153776919 -88887434 - MIR SINE MIR -52 210 15 193 295 33 0 chr1 153777733 153777794 -88886559 + L2 LINE L2 3239 3301 -12 647 251 26 26 chr1 153778769 153778960 -88885393 + MIR SINE MIR 18 208 -54 2499 71 3 0 chr1 153779335 153779645 -88884708 + AluY SINE Alu 1 311 0 1458 154 150 0 chr1 153779761 153780028 -88884325 + AluJb SINE Alu 1 307 -5 5624 158 19 67 chr1 153780699 153781886 -88882467 + L1P LINE L1 4084 5214 -932 201 74 0 0 chr1 153782076 153782103 -88882250 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2326 114 0 3 chr1 153782249 153782557 -88881796 - AluSx SINE Alu -5 307 1 302 408 33 5 chr1 153782561 153782745 -88881608 - L3b LINE CR1 -265 1318 1130 1238 268 141 36 chr1 153782827 153783542 -88880811 - L1ME4a LINE L1 -1 6120 5328 22 0 0 0 chr1 153783768 153783790 -88880563 + AT_rich Low_complexity Low_complexity 1 22 0 315 354 48 29 chr1 153786843 153787049 -88877304 + L2 LINE L2 2746 2955 -359 282 295 84 74 chr1 153787089 153787279 -88877074 + L2 LINE L2 3107 3298 -15 252 116 274 8 chr1 153788212 153788301 -88876052 + MER53 DNA DNA 1 186 -3 260 355 137 0 chr1 153788889 153789013 -88875340 - L2 LINE L2 -9 3263 3123 251 361 39 0 chr1 153789303 153789433 -88874920 - L2 LINE L2 -520 2794 2660 429 239 28 9 chr1 153791302 153791411 -88872942 + MER81 DNA DNA 1 111 -3 258 105 0 0 chr1 153792005 153792043 -88872310 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 384 179 0 0 chr1 153792286 153792364 -88871989 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 229 274 12 107 chr1 153792371 153792539 -88871814 + L1ME4a LINE L1 5956 6107 -14 509 311 28 34 chr1 153794023 153794200 -88870153 - MIR3 SINE MIR 0 208 33 241 182 23 0 chr1 153794366 153794410 -88869943 - L2 LINE L2 -18 3254 3210 210 290 121 24 chr1 153796208 153796332 -88868021 + MIR SINE MIR 62 197 -65 23 0 0 0 chr1 153797993 153798016 -88866337 + AT_rich Low_complexity Low_complexity 1 23 0 426 308 114 26 chr1 153800876 153801103 -88863250 - MLT1J2 LTR MaLR 0 450 204 1840 123 99 0 chr1 153801834 153802118 -88862235 - AluSx SINE Alu 0 312 1 755 109 0 0 chr1 153802143 153802244 -88862109 + HY3 scRNA scRNA 1 101 0 27 0 0 0 chr1 153802244 153802271 -88862082 + AT_rich Low_complexity Low_complexity 1 27 0 1893 149 14 3 chr1 153802858 153803153 -88861200 - AluJo SINE Alu -9 303 6 24 0 0 0 chr1 153804373 153804397 -88859956 + AT_rich Low_complexity Low_complexity 1 24 0 2647 242 54 39 chr1 153804930 153805666 -88858687 - MER21B LTR ERV1 -111 752 6 1060 209 0 0 chr1 153805667 153805858 -88858495 + MIR SINE MIR 70 260 -2 297 0 0 0 chr1 153806360 153806393 -88857960 + (CA)n Simple_repeat Simple_repeat 1 33 0 237 151 0 75 chr1 153807614 153807667 -88856686 - L2 LINE L2 -3 3269 3221 187 244 0 111 chr1 153808373 153808463 -88855890 + L2 LINE L2 2868 2947 -325 238 330 6 39 chr1 153808768 153808950 -88855403 + GA-rich Low_complexity Low_complexity 2 177 0 1422 270 39 32 chr1 153809402 153810101 -88854252 - L2 LINE L2 -8 3305 2591 243 333 74 37 chr1 153810118 153810253 -88854100 + L2 LINE L2 2898 3037 -235 488 309 110 54 chr1 153811280 153811762 -88852591 - L2 LINE L2 -1 3312 2804 293 203 43 152 chr1 153812990 153813128 -88851225 - MIR SINE MIR -51 211 89 287 176 0 0 chr1 153813129 153813180 -88851173 + L2 LINE L2 3222 3272 0 679 264 130 0 chr1 153813429 153813637 -88850716 - MIR SINE MIR -24 238 4 23 33 0 0 chr1 153814707 153814737 -88849616 + AT_rich Low_complexity Low_complexity 1 30 0 397 299 104 43 chr1 153814989 153815220 -88849133 + MIR SINE MIR 1 245 -17 291 100 0 0 chr1 153817080 153817120 -88847233 + 5S rRNA rRNA 3 42 -79 798 256 68 52 chr1 153817440 153817749 -88846604 - L2 LINE L2 -2 3311 2998 1819 157 0 0 chr1 153819443 153819717 -88844636 - AluJb SINE Alu -38 274 1 252 0 0 0 chr1 153819809 153819837 -88844516 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 270 0 0 0 chr1 153819836 153819866 -88844487 + (TA)n Simple_repeat Simple_repeat 1 30 0 251 191 32 0 chr1 153819894 153819957 -88844396 + (TA)n Simple_repeat Simple_repeat 1 65 0 252 59 0 0 chr1 153819958 153819992 -88844361 + (GA)n Simple_repeat Simple_repeat 1 34 0 2779 118 0 6 chr1 153821123 153821489 -88842864 + THE1B LTR MaLR 1 364 0 903 142 0 0 chr1 153821522 153821649 -88842704 - AluSq/x SINE Alu -185 127 1 1650 172 57 3 chr1 153822479 153822775 -88841578 + AluJo SINE Alu 1 312 0 189 74 0 0 chr1 153822809 153822836 -88841517 + (CA)n Simple_repeat Simple_repeat 2 28 0 666 235 34 50 chr1 153822950 153823129 -88841224 - MIR SINE MIR -59 203 28 1671 163 10 14 chr1 153823850 153824139 -88840214 + AluJo SINE Alu 1 288 -24 4612 108 22 2 chr1 153825043 153825665 -88838688 - MER41B LTR ERV1 0 635 1 357 268 34 89 chr1 153825841 153825901 -88838452 - MIR3 SINE MIR -4 204 142 1330 84 0 0 chr1 153825901 153826067 -88838286 - L1PA14 LINE L1 -1 6160 5995 357 268 34 89 chr1 153826067 153826185 -88838168 - MIR3 SINE MIR -66 142 36 1430 171 0 0 chr1 153826564 153826786 -88837567 - AluJo SINE Alu -3 309 88 2039 171 36 68 chr1 153826884 153827328 -88837025 - LTR49 LTR ERV1 -72 537 107 2461 201 38 58 chr1 153827560 153828091 -88836262 - MLT2B1 LTR ERVL 0 520 1 231 313 58 31 chr1 153828132 153828423 -88835930 + L1MC/D LINE L1 5633 5931 -1877 1222 176 14 14 chr1 153829057 153829273 -88835080 - MER20 DNA MER1_type -3 216 1 833 229 80 0 chr1 153829323 153829511 -88834842 - MIR SINE MIR -1 261 59 2503 110 3 0 chr1 153830505 153830841 -88833512 - L1PA15 LINE L1 -7 6158 5822 324 342 117 20 chr1 153830884 153831080 -88833273 + MIR SINE MIR 48 262 0 191 298 0 0 chr1 153831133 153831180 -88833173 + L2 LINE L2 3210 3256 -16 204 300 9 45 chr1 153831222 153831332 -88833021 - MIR SINE MIR -61 147 42 223 260 0 0 chr1 153832299 153832349 -88832004 + GA-rich Low_complexity Low_complexity 2 51 0 549 217 17 0 chr1 153833127 153833242 -88831111 + L2 LINE L2 2257 2373 -941 1895 193 154 14 chr1 153833257 153833697 -88830656 + MER44D DNA MER2_type 49 605 0 1058 264 39 66 chr1 153833697 153834512 -88829841 + L2 LINE L2 2523 3312 -1 313 315 43 31 chr1 153835117 153835279 -88829074 + MIR SINE MIR 12 175 -87 1110 83 0 7 chr1 153835397 153835542 -88828811 - L1PB1 LINE L1 -3 6148 6005 270 329 7 64 chr1 153836271 153836411 -88827942 - MLT1J LTR MaLR -92 419 288 313 292 21 88 chr1 153836658 153836850 -88827503 - MLT1J LTR MaLR -330 181 3 2050 87 4 0 chr1 153837889 153838154 -88826199 - AluY SINE Alu -7 304 39 1817 268 94 36 chr1 153838449 153839169 -88825184 + L2 LINE L2 2027 2788 -526 537 295 147 36 chr1 153839169 153839552 -88824801 - MLT1L LTR MaLR 0 511 173 276 317 24 0 chr1 153839738 153839820 -88824533 + L2 LINE L2 3186 3269 -3 353 310 163 27 chr1 153840377 153840561 -88823792 + MIR SINE MIR 47 255 -7 280 373 6 25 chr1 153841216 153841377 -88822976 + MIR3 SINE MIR 42 199 -9 225 338 23 38 chr1 153842127 153842260 -88822093 - L2 LINE L2 -173 3099 2969 403 324 75 64 chr1 153842950 153843389 -88820964 - L2 LINE L2 -3 3310 2867 448 323 0 24 chr1 153843450 153843614 -88820739 + L2 LINE L2 2362 2521 -793 435 148 12 25 chr1 153843641 153843722 -88820631 + L1M4 LINE L1 54 133 -6409 * 3754 224 28 19 chr1 153843719 153844780 -88819573 + L1M4 LINE L1 2953 4023 -2621 673 241 7 35 chr1 153844784 153844929 -88819424 + FLAM_A SINE Alu 1 141 -1 4074 240 55 3 chr1 153844939 153846038 -88818315 + L1M4 LINE L1 4026 5181 -1463 812 96 10 0 chr1 153846138 153846242 -88818111 - AluSq/x SINE Alu -206 106 2 237 33 0 0 chr1 153846298 153846328 -88818025 + (TG)n Simple_repeat Simple_repeat 2 31 0 292 271 14 0 chr1 153847392 153847462 -88816891 + MER81 DNA DNA 41 111 -3 373 305 51 51 chr1 153847711 153847908 -88816445 + MIR SINE MIR 8 204 -58 1346 284 126 34 chr1 153847958 153848885 -88815468 - L2 LINE L2 -1 3312 2299 489 244 38 0 chr1 153849960 153850091 -88814262 + MER103 DNA DNA 3 138 -28 429 313 102 17 chr1 153850618 153850794 -88813559 - L3 LINE CR1 0 1577 1387 201 276 35 0 chr1 153851384 153851442 -88812911 + L2 LINE L2 2433 2492 -822 198 209 0 0 chr1 153852022 153852065 -88812288 + (TATG)n Simple_repeat Simple_repeat 4 46 0 224 364 13 0 chr1 153853090 153853167 -88811186 + MIR SINE MIR 170 247 -15 368 286 28 62 chr1 153853736 153853809 -88810544 - MER5B DNA MER1_type 0 178 104 1283 233 82 0 chr1 153853809 153854126 -88810227 + MER2 DNA MER2_type 1 343 -1 368 286 28 62 chr1 153854126 153854230 -88810123 - MER5B DNA MER1_type -74 104 7 231 208 83 0 chr1 153855203 153855251 -88809102 + L2 LINE L2 3186 3237 -76 281 351 65 6 chr1 153855400 153855568 -88808785 + MER5B DNA MER1_type 1 178 0 22 0 0 0 chr1 153855584 153855606 -88808747 + AT_rich Low_complexity Low_complexity 1 22 0 332 272 37 0 chr1 153855957 153856038 -88808315 - L2 LINE L2 -46 3267 3184 226 146 18 18 chr1 153856225 153856280 -88808073 + CT-rich Low_complexity Low_complexity 1 55 0 276 130 0 0 chr1 153856982 153857028 -88807325 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 197 283 123 57 chr1 153857030 153857136 -88807217 - L3 LINE CR1 -1445 132 20 * 778 235 25 0 chr1 153857047 153857209 -88807144 + MER5A DNA MER1_type 24 189 0 265 295 23 75 chr1 153857226 153857399 -88806954 - MLT1H LTR MaLR -257 292 129 321 275 117 0 chr1 153857487 153857607 -88806746 - MIR SINE MIR -56 206 73 21 57 0 0 chr1 153858240 153858275 -88806078 + AT_rich Low_complexity Low_complexity 1 35 0 2233 115 3 6 chr1 153859712 153860025 -88804328 - AluSx SINE Alu 0 312 1 248 239 82 69 chr1 153861341 153861500 -88802853 - LTR16C LTR ERVL -5 486 292 180 225 0 84 chr1 153862129 153862200 -88802153 - MER5A DNA MER1_type -1 188 124 271 365 39 33 chr1 153863162 153863343 -88801010 + MER5A DNA MER1_type 1 182 -7 1035 183 43 47 chr1 153863425 153863660 -88800693 + MIR SINE MIR 28 261 -1 2410 83 3 0 chr1 153863778 153864144 -88800209 - AluSx SINE Alu 0 367 1 238 287 159 38 chr1 153864323 153864480 -88799873 - MIR3 SINE MIR -10 198 23 354 289 94 8 chr1 153865891 153866019 -88798334 + MIR SINE MIR 4 142 -66 2551 191 23 18 chr1 153866421 153866604 -88797749 + L1M4 LINE L1 4777 4958 -1226 2581 147 108 29 chr1 153866604 153866644 -88797709 - MLT2B1 LTR ERVL 0 520 485 180 0 0 0 chr1 153866644 153866664 -88797689 + (CA)n Simple_repeat Simple_repeat 2 21 0 2581 147 108 29 chr1 153866664 153867105 -88797248 - MLT2B1 LTR ERVL -35 485 1 2551 191 23 18 chr1 153867105 153867709 -88796644 + L1M4 LINE L1 4958 5570 -614 379 146 37 61 chr1 153867709 153867791 -88796562 + L2 LINE L2 3234 3313 0 280 342 103 19 chr1 153868909 153869064 -88795289 + MIR SINE MIR 13 180 -82 207 0 0 0 chr1 153869595 153869618 -88794735 + (A)n Simple_repeat Simple_repeat 1 23 0 318 226 24 12 chr1 153870671 153870755 -88793598 + LTR16C LTR ERVL 317 401 -90 308 227 454 0 chr1 153870803 153871063 -88793290 + L2 LINE L2 1903 2280 -1034 414 353 77 14 chr1 153871124 153871345 -88793008 - MIR SINE MIR -26 236 2 337 280 0 0 chr1 153871388 153871463 -88792890 - MIR3 SINE MIR -3 205 131 333 328 0 9 chr1 153873708 153873824 -88790529 + MIR3 SINE MIR 71 185 -23 215 133 22 0 chr1 153874532 153874577 -88789776 + GA-rich Low_complexity Low_complexity 3 48 0 21 0 0 0 chr1 153875653 153875674 -88788679 + AT_rich Low_complexity Low_complexity 1 21 0 378 213 38 0 chr1 153876247 153876327 -88788026 - MER117 DNA MER1_type -114 83 1 21 36 0 0 chr1 153877029 153877057 -88787296 + AT_rich Low_complexity Low_complexity 1 28 0 220 339 77 54 chr1 153877422 153877590 -88786763 + MIR3 SINE MIR 37 208 0 672 266 68 14 chr1 153877863 153878085 -88786268 - MIR SINE MIR 0 262 29 7701 78 8 13 chr1 153878651 153879307 -88785046 - L1P LINE L1 -2316 3830 3173 252 0 0 0 chr1 153879307 153879335 -88785018 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 7371 30 0 5 chr1 153879335 153880299 -88784054 - L1PA3 LINE L1 -13 6142 5180 7701 78 8 13 chr1 153880299 153880811 -88783542 - L1P LINE L1 -2971 3175 2666 211 326 22 58 chr1 153881120 153881258 -88783095 + MER5B DNA MER1_type 21 153 -25 1526 188 60 23 chr1 153881539 153881891 -88782462 + MLT1A1 LTR MaLR 1 365 0 577 79 0 0 chr1 153882317 153882393 -88781960 + U6 snRNA snRNA 1 76 -31 335 341 40 57 chr1 153882538 153882714 -88781639 - MER5A DNA MER1_type 0 189 17 222 248 57 86 chr1 153882995 153883100 -88781253 + MIR SINE MIR 132 233 -29 1009 251 61 16 chr1 153883106 153883430 -88780923 + Tigger7 DNA MER2_type 1 2491 0 725 218 34 43 chr1 153883551 153883785 -88780568 - L1M4c LINE L1 -5374 1272 1041 387 305 69 47 chr1 153883986 153884219 -88780134 - L1M4c LINE L1 -6291 251 14 306 73 0 0 chr1 153884378 153884419 -88779934 + (T)n Simple_repeat Simple_repeat 1 41 0 247 284 29 78 chr1 153884419 153884521 -88779832 - MIR SINE MIR -74 134 38 380 343 87 32 chr1 153885909 153886243 -88778110 + L1ME4a LINE L1 5320 5673 -556 454 304 42 18 chr1 153886265 153886647 -88777706 + L1ME4a LINE L1 5728 6118 -3 216 343 14 0 chr1 153887047 153887120 -88777233 + MER91A DNA MER1_type 123 196 0 242 243 14 0 chr1 153887387 153887457 -88776896 - MER103 DNA DNA -10 156 86 12681 47 10 2 chr1 153887464 153889862 -88774491 - L1PA5 LINE L1 -6 6148 3738 10506 131 5 2 chr1 153889979 153891677 -88772676 - L1P LINE L1 -4441 1705 3 187 365 52 10 chr1 153891905 153892001 -88772352 + L2 LINE L2 3173 3272 0 471 232 20 20 chr1 153892778 153892877 -88771476 + L2 LINE L2 3154 3252 -20 448 322 28 7 chr1 153893013 153893156 -88771197 + MIR SINE MIR 3 148 -114 402 245 143 78 chr1 153893163 153893652 -88770701 + MLT1F LTR MaLR 10 530 -12 215 253 55 55 chr1 153893702 153893793 -88770560 - MIR SINE MIR -65 197 107 748 182 0 0 chr1 153893838 153894010 -88770343 + AluJb SINE Alu 163 334 0 1703 64 18 114 chr1 153895217 153895498 -88768855 + AluSq SINE Alu 45 298 -15 511 203 116 112 chr1 153896877 153897128 -88767225 + MIR SINE MIR 2 253 -9 238 207 17 0 chr1 153897130 153897188 -88767165 + (CAT)n Simple_repeat Simple_repeat 1 59 0 807 231 91 15 chr1 153897842 153898041 -88766312 - MIR SINE MIR -13 249 36 2128 107 0 0 chr1 153898067 153898347 -88766006 + AluSg SINE Alu 1 280 -30 743 243 29 33 chr1 153898716 153898926 -88765427 + MER58A DNA MER1_type 1 209 -15 274 345 40 58 chr1 153898974 153899148 -88765205 - MIR SINE MIR -72 190 20 268 239 37 37 chr1 153899337 153899446 -88764907 + AluSx SINE Alu 3 111 -192 862 207 35 6 chr1 153899626 153899800 -88764553 + AluSx SINE Alu 117 295 -14 372 310 114 11 chr1 153899893 153900164 -88764189 + L1MCc LINE L1 110 408 -6015 1860 216 86 12 chr1 153900402 153900916 -88763437 + L1MD3 LINE L1 7430 7981 -14 1135 272 141 27 chr1 153901805 153901987 -88762366 - MLT1L LTR MaLR 0 615 455 1875 132 44 20 chr1 153901987 153902282 -88762071 - AluSg SINE Alu -8 302 1 1135 272 141 27 chr1 153902282 153902651 -88761702 - MLT1L LTR MaLR -160 455 1 244 339 58 58 chr1 153903083 153903272 -88761081 + L2 LINE L2 2896 3084 -188 2392 136 8 2 chr1 153903327 153903723 -88760630 - HSMAR2 DNA Mariner -1 1301 904 1095 132 0 35 chr1 153903724 153903898 -88760455 - AluJb SINE Alu -1 311 144 5723 120 0 16 chr1 153903907 153904825 -88759528 - HSMAR2 DNA Mariner -398 904 2 386 359 48 57 chr1 153904848 153905596 -88758757 - L2 LINE L2 -24 3289 2539 1724 209 146 34 chr1 153905597 153906105 -88758248 - MLT1E2 LTR MaLR 0 626 62 278 271 155 34 chr1 153906331 153906481 -88757872 + MIR3 SINE MIR 4 167 -41 810 241 69 10 chr1 153907221 153907424 -88756929 - MIR SINE MIR -5 257 43 784 157 0 0 chr1 153907425 153907540 -88756813 + FLAM_C SINE Alu 1 115 -18 23 33 0 0 chr1 153907542 153907572 -88756781 + AT_rich Low_complexity Low_complexity 1 30 0 190 293 0 0 chr1 153907572 153907613 -88756740 - MIR SINE MIR -208 54 14 540 241 232 0 chr1 153907954 153908161 -88756192 - MIR SINE MIR 0 262 8 409 280 59 0 chr1 153909557 153909675 -88754678 + MIR SINE MIR 5 129 -133 8548 44 6 1 chr1 153909682 153911541 -88752812 - L1PA5 LINE L1 -1 6153 4305 753 61 0 0 chr1 153911541 153911640 -88752713 + L1P LINE L1 3719 3817 -2329 3955 33 2 0 chr1 153911746 153912236 -88752117 + L1P LINE L1 3792 4282 -1864 803 273 34 79 chr1 153912236 153912731 -88751622 + MLT1J LTR MaLR 39 511 0 700 180 73 29 chr1 153912898 153913104 -88751249 - L1MB1 LINE L1 -183 6966 6752 256 206 29 15 chr1 153913118 153913186 -88751167 + (TA)n Simple_repeat Simple_repeat 2 70 0 341 247 22 0 chr1 153913186 153913275 -88751078 - L1MC4 LINE L1 -1339 6703 6613 39 50 0 0 chr1 153913275 153913335 -88751018 + AT_rich Low_complexity Low_complexity 1 60 0 5159 164 27 30 chr1 153913335 153915481 -88748872 - L1PB3 LINE L1 -15 6139 4008 4245 178 15 26 chr1 153915481 153916848 -88747505 - L1MB1 LINE L1 -531 6741 5376 2224 263 30 49 chr1 153917384 153918905 -88745448 - L1MB1 LINE L1 -4512 2596 1 1230 250 57 13 chr1 153918913 153919301 -88745052 + L1ME3A LINE L1 5705 6109 -61 763 256 109 23 chr1 153920213 153920479 -88743874 + L3b LINE CR1 1221 1509 -74 1414 214 28 165 chr1 153921942 153922831 -88741522 - LTR41 LTR ERVL -6 767 1 197 286 0 0 chr1 153922950 153922992 -88741361 - MIR SINE MIR -173 89 48 240 210 32 48 chr1 153923463 153923525 -88740828 - MIR SINE MIR -125 83 23 412 269 228 0 chr1 153923818 153923963 -88740390 - MER5B DNA MER1_type 0 178 1 345 100 0 0 chr1 153924001 153924051 -88740302 + (A)n Simple_repeat Simple_repeat 1 50 0 666 217 14 146 chr1 153924897 153925196 -88739157 - L1ME1 LINE L1 -9 6157 5931 1370 169 123 4 chr1 153925196 153925333 -88739020 - AluJo SINE Alu -21 291 172 225 0 0 0 chr1 153925333 153925358 -88738995 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1370 169 123 4 chr1 153925358 153925480 -88738873 - AluJo SINE Alu -140 172 1 666 217 14 146 chr1 153925480 153925613 -88738740 - L1ME1 LINE L1 -235 5931 5782 * 793 235 66 12 chr1 153925602 153925921 -88738432 - L1MEc LINE L1 -5038 1358 1023 1447 227 17 53 chr1 153925939 153926406 -88737947 - L1MEc LINE L1 -5524 872 423 1341 294 51 40 chr1 153926457 153926680 -88737673 - L2 LINE L2 -931 2383 2164 2682 26 0 3 chr1 153926680 153926985 -88737368 + AluY SINE Alu 1 304 -7 1341 294 51 40 chr1 153926985 153927388 -88736965 - L2 LINE L2 -1150 2164 1750 360 339 146 27 chr1 153927676 153928189 -88736164 + L2 LINE L2 2615 3184 -88 214 107 71 0 chr1 153929399 153929455 -88734898 + (TA)n Simple_repeat Simple_repeat 2 61 0 567 247 102 40 chr1 153929461 153929765 -88734588 - L1ME4a LINE L1 -1 6120 5798 2272 104 0 0 chr1 153929903 153930200 -88734153 - AluSx SINE Alu -15 297 1 257 322 7 27 chr1 153930316 153930465 -88733888 - L1M2 LINE L1 -652 5639 5494 553 336 18 35 chr1 153930710 153930939 -88733414 + MIR SINE MIR 9 233 -29 2117 173 40 3 chr1 153930941 153931293 -88733060 + MLT1A1 LTR MaLR 1 365 0 483 250 9 9 chr1 153931381 153931493 -88732860 - MIR3 SINE MIR -7 201 90 2008 113 3 7 chr1 153931730 153932048 -88732305 - AluY SINE Alu 0 317 1 365 246 94 36 chr1 153932070 153932208 -88732145 - L3 LINE CR1 -627 950 805 229 362 64 35 chr1 153933203 153933344 -88731009 + L2 LINE L2 3117 3261 -11 427 280 40 67 chr1 153933477 153933657 -88730696 + MIR SINE MIR 10 187 -56 626 303 74 12 chr1 153933906 153934150 -88730203 + MIR SINE MIR 4 262 0 22 0 0 0 chr1 153935003 153935025 -88729328 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 153935080 153935104 -88729249 + AT_rich Low_complexity Low_complexity 1 24 0 210 113 245 19 chr1 153935826 153935879 -88728474 + L2 LINE L2 3245 3309 -4 249 306 0 0 chr1 153936949 153937068 -88727285 + L1MC4 LINE L1 6615 6703 -1339 227 291 47 0 chr1 153936998 153937084 -88727269 - L1MC4 LINE L1 -1339 6703 6614 * 265 258 45 0 chr1 153937095 153937184 -88727169 + L1MC4 LINE L1 6614 6706 -1336 220 192 39 0 chr1 153937193 153937245 -88727108 + (TA)n Simple_repeat Simple_repeat 2 55 0 419 276 148 24 chr1 153937309 153937519 -88726834 + MARNA DNA Mariner 177 412 -174 244 259 122 38 chr1 153937862 153937993 -88726360 - MIR SINE MIR -2 260 119 303 244 56 22 chr1 153938054 153938144 -88726209 - MIR SINE MIR -65 197 105 276 246 77 101 chr1 153938241 153938397 -88725956 + MLT1K LTR MaLR 387 538 -50 1796 154 133 9 chr1 153938397 153938721 -88725632 + MLT1A1 LTR MaLR 2 365 0 276 246 77 101 chr1 153938721 153938771 -88725582 + MLT1K LTR MaLR 538 588 0 339 282 0 29 chr1 153938785 153938888 -88725465 - MARNA DNA Mariner -12 574 475 472 251 114 12 chr1 153940370 153940537 -88723816 + MIR SINE MIR 20 203 -59 255 188 21 0 chr1 153942633 153942681 -88721672 - Alu SINE Alu -252 50 2 2356 85 0 3 chr1 153942695 153942988 -88721365 - AluSc SINE Alu -17 292 1 261 328 0 0 chr1 153943086 153943153 -88721200 - L2 LINE L2 0 3272 3206 22 0 0 0 chr1 153943390 153943412 -88720941 + AT_rich Low_complexity Low_complexity 1 22 0 229 211 0 0 chr1 153944155 153944207 -88720146 + A-rich Low_complexity Low_complexity 1 52 0 261 0 0 0 chr1 153944268 153944297 -88720056 + (TC)n Simple_repeat Simple_repeat 2 30 0 1604 138 8 4 chr1 153944346 153944585 -88719768 + L1MC1 LINE L1 6093 6332 -1 482 225 63 21 chr1 153944787 153944929 -88719424 - MIR SINE MIR 0 262 115 1549 107 148 19 chr1 153945144 153945414 -88718939 + AluSg1 SINE Alu 1 305 -4 253 0 54 0 chr1 153946551 153946588 -88717765 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1876 135 7 4 chr1 153947110 153947391 -88716962 - AluJb SINE Alu -2 310 29 586 122 0 0 chr1 153947397 153947471 -88716882 - tRNA-Lys-AAG tRNA tRNA -2 74 1 461 266 102 23 chr1 153947497 153947674 -88716679 - MARNA DNA Mariner -338 248 58 205 208 0 21 chr1 153947690 153947738 -88716615 + CT-rich Low_complexity Low_complexity 4 50 0 1391 110 10 24 chr1 153947876 153948085 -88716268 + AluSg/x SINE Alu 101 306 -6 26 0 0 0 chr1 153948222 153948248 -88716105 + AT_rich Low_complexity Low_complexity 1 26 0 319 118 39 0 chr1 153948344 153948395 -88715958 - MER116 DNA Mariner -26 54 2 24 0 0 0 chr1 153948409 153948433 -88715920 + AT_rich Low_complexity Low_complexity 1 24 0 1403 186 52 0 chr1 153950080 153950370 -88713983 - MER33 DNA MER1_type 0 324 20 221 311 48 62 chr1 153950659 153950868 -88713485 + MIR SINE MIR 40 245 -17 844 144 0 30 chr1 153951396 153951528 -88712825 + FLAM_A SINE Alu 1 128 -5 380 304 60 119 chr1 153952376 153952402 -88711951 - L2 LINE L2 0 3272 3246 1668 164 33 3 chr1 153952402 153952524 -88711829 + AluJb SINE Alu 1 118 -194 432 0 0 0 chr1 153952524 153952572 -88711781 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1819 166 23 0 chr1 153952573 153952875 -88711478 + AluJb SINE Alu 1 309 -3 1668 164 33 3 chr1 153952875 153953049 -88711304 + AluJb SINE Alu 117 308 -4 2243 106 3 10 chr1 153953049 153953352 -88711001 + AluSp SINE Alu 1 301 -12 380 304 60 119 chr1 153953352 153953855 -88710498 - L2 LINE L2 -24 3248 2772 1075 156 229 98 chr1 153953996 153954225 -88710128 + MER34 LTR ERV1 138 336 -206 2373 103 0 0 chr1 153954225 153954536 -88709817 + AluSx SINE Alu 2 312 0 1075 156 229 98 chr1 153954536 153954664 -88709689 + MER34 LTR ERV1 336 542 0 430 270 26 0 chr1 153954671 153954786 -88709567 - L1ME LINE L1 -442 5679 5562 2262 99 0 16 chr1 153954793 153955105 -88709248 + AluSx SINE Alu 1 307 -5 282 260 0 0 chr1 153955148 153955221 -88709132 - L1ME2 LINE L1 -10 6154 6082 1670 245 66 56 chr1 153955249 153955897 -88708456 - HAL1 LINE L1 -355 2152 1498 216 339 0 0 chr1 153955925 153955981 -88708372 - L2 LINE L2 -16 3297 3242 191 229 43 57 chr1 153956184 153956254 -88708099 + L2 LINE L2 2478 2546 -768 1568 104 5 14 chr1 153956254 153956474 -88707879 + L1PB2 LINE L1 5932 6149 -2 519 287 39 0 chr1 153956613 153956794 -88707559 - MLT1J LTR MaLR 0 511 324 422 296 14 0 chr1 153957026 153957168 -88707185 - MER103 DNA DNA -12 154 11 195 349 76 49 chr1 153957203 153957467 -88706886 - L2 LINE L2 -1337 1977 1707 387 174 0 0 chr1 153957675 153957761 -88706592 + CT-rich Low_complexity Low_complexity 2 87 0 1627 89 27 18 chr1 153958345 153958569 -88705784 + AluSg/x SINE Alu 83 308 -2 181 373 196 21 chr1 153959492 153959972 -88704381 - L2 LINE L2 -1688 1626 1063 2207 112 7 3 chr1 153960019 153960324 -88704029 + AluSq SINE Alu 1 306 -7 224 342 0 0 chr1 153960423 153960499 -88703854 - L2 LINE L2 -2519 795 720 263 288 38 12 chr1 153960530 153960610 -88703743 + MIR SINE MIR 53 134 -128 2239 124 0 0 chr1 153960673 153960979 -88703374 + AluSx SINE Alu 1 306 -6 751 211 0 0 chr1 153961102 153961230 -88703123 + FLAM_A SINE Alu 1 128 -5 3461 228 58 97 chr1 153961435 153961785 -88702568 + L1MEc LINE L1 35 397 -5999 2353 115 6 14 chr1 153961785 153962133 -88702220 - L1MA9 LINE L1 -5 6307 5963 3461 228 58 97 chr1 153962133 153962419 -88701934 + L1MEc LINE L1 397 693 -5703 299 125 0 0 chr1 153962419 153962518 -88701835 + Alu SINE Alu 234 332 0 3461 228 58 97 chr1 153962518 153963155 -88701198 + L1MEc LINE L1 693 1353 -5043 847 172 0 15 chr1 153963155 153963289 -88701064 + FLAM_C SINE Alu 1 132 -1 3461 228 58 97 chr1 153963289 153963396 -88700957 + L1MEc LINE L1 1353 1408 -4988 2243 113 0 10 chr1 153963396 153963705 -88700648 + AluSx SINE Alu 1 306 -6 3461 228 58 97 chr1 153963705 153963756 -88700597 + L1MEc LINE L1 1408 1459 -4937 2258 110 0 0 chr1 153963917 153964208 -88700145 + AluSg SINE Alu 1 291 -19 2100 119 0 3 chr1 153964220 153964515 -88699838 + AluSx SINE Alu 1 294 -18 606 268 147 22 chr1 153965266 153965497 -88698856 - MLT1J1 LTR MaLR -110 336 77 2641 170 29 4 chr1 153965561 153966014 -88698339 - MLT2C2 LTR ERVL 0 464 1 2409 108 0 0 chr1 153966240 153966546 -88697807 - AluSx SINE Alu -6 306 1 1938 155 0 7 chr1 153967193 153967496 -88696857 - AluJb SINE Alu -11 301 1 414 115 82 0 chr1 153968009 153968070 -88696283 - Alu SINE Alu -13 298 233 252 206 9 122 chr1 153968409 153968516 -88695837 - MIR SINE MIR -55 207 113 226 241 38 51 chr1 153968558 153968637 -88695716 + L2 LINE L2 3194 3271 -1 593 171 299 16 chr1 153968929 153969116 -88695237 - MER112 DNA MER1_type -20 240 1 2567 71 0 0 chr1 153969315 153969626 -88694727 + AluY SINE Alu 1 311 0 399 266 89 39 chr1 153970064 153970220 -88694133 + MIR SINE MIR 12 179 -83 209 218 109 0 chr1 153970941 153970996 -88693357 - MIR SINE MIR -110 152 92 954 131 0 29 chr1 153971179 153971316 -88693037 + FLAM_C SINE Alu 1 133 0 2324 91 0 3 chr1 153971385 153971683 -88692670 + AluSc SINE Alu 5 301 -8 706 215 0 0 chr1 153971829 153971992 -88692361 - AluSq SINE Alu -14 299 137 497 190 30 10 chr1 153972093 153972193 -88692160 - MER5A DNA MER1_type -87 102 1 2036 132 0 0 chr1 153972871 153973172 -88691181 - AluSx SINE Alu 0 301 1 974 254 18 4 chr1 153973174 153973402 -88690951 - MIR SINE MIR -20 242 12 971 242 20 16 chr1 153973594 153973842 -88690511 - L1M4 LINE L1 -1899 4247 3999 2159 104 3 39 chr1 153973883 153974191 -88690162 - AluSx SINE Alu -15 297 1 1593 164 29 7 chr1 153974195 153974496 -88689857 - AluJo SINE Alu 0 307 1 189 0 0 0 chr1 153975271 153975292 -88689061 + (A)n Simple_repeat Simple_repeat 1 21 0 260 109 0 43 chr1 153975293 153975339 -88689014 - MER34 LTR ERV1 -419 123 80 876 152 0 0 chr1 153975339 153975471 -88688882 - AluJb SINE Alu -5 307 176 267 130 109 0 chr1 153975471 153975517 -88688836 - MER34 LTR ERV1 -458 84 34 1737 188 0 19 chr1 153975521 153975829 -88688524 - AluJb SINE Alu -10 302 1 736 125 0 117 chr1 153975857 153975985 -88688368 - FLAM_A SINE Alu -17 125 13 1155 201 27 51 chr1 153976049 153976342 -88688011 + AluJo SINE Alu 9 294 -18 227 111 22 67 chr1 153976825 153976870 -88687483 - L2 LINE L2 -5 3308 3266 1828 137 6 40 chr1 153977198 153977520 -88686833 - AluSx SINE Alu 0 312 2 295 238 83 12 chr1 153978222 153978306 -88686047 + MIR SINE MIR 92 181 -81 24 41 0 20 chr1 153978459 153978488 -88685865 + AT_rich Low_complexity Low_complexity 1 30 -18 1245 59 33 0 chr1 153978488 153978641 -88685712 + L1PA13 LINE L1 6000 6157 -6 24 41 0 20 chr1 153978641 153978660 -88685693 + AT_rich Low_complexity Low_complexity 30 48 0 1580 165 25 7 chr1 153978721 153979006 -88685347 - AluJo SINE Alu -22 290 1 1215 144 35 70 chr1 153979787 153979949 -88684404 - AluJo SINE Alu -18 294 143 2228 83 24 0 chr1 153979949 153980237 -88684116 - AluSq SINE Alu -18 295 1 1215 144 35 70 chr1 153980237 153980331 -88684022 - AluJo SINE Alu -169 143 47 31 44 0 0 chr1 153980771 153980816 -88683537 + GC_rich Low_complexity Low_complexity 1 45 0 1909 126 0 7 chr1 153981337 153981661 -88682692 - AluJb SINE Alu 0 322 1 1405 186 33 4 chr1 153981916 153982191 -88682162 - L1MA9 LINE L1 -5 6307 6025 241 245 19 0 chr1 153982195 153982248 -88682105 - L2 LINE L2 -27 3245 3192 2313 116 0 0 chr1 153983256 153983566 -88680787 + AluSq SINE Alu 1 310 -3 2234 94 0 10 chr1 153983621 153983920 -88680433 + AluSc SINE Alu 10 305 -4 2412 97 3 0 chr1 153984423 153984733 -88679620 - AluSx SINE Alu -1 311 1 274 85 0 0 chr1 153984917 153984964 -88679389 + L1MA8 LINE L1 6243 6289 -2 437 206 0 0 chr1 153985022 153985095 -88679258 + tRNA-Val-GTT tRNA tRNA 1 73 -3 15226 51 11 2 chr1 153985183 153987775 -88676578 - L1PA6 LINE L1 0 6154 3542 7107 131 61 26 chr1 153987776 153988961 -88675392 - L1P LINE L1 -4913 1233 8 237 143 24 0 chr1 153989114 153989156 -88675197 - LTR40a LTR ERVL -1 518 476 253 109 36 0 chr1 153989184 153989239 -88675114 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 254 179 85 0 chr1 153989247 153989353 -88675000 + (TA)n Simple_repeat Simple_repeat 2 116 0 306 249 38 115 chr1 153989353 153989445 -88674908 - LTR40b LTR ERVL -74 388 319 2296 119 0 0 chr1 153989445 153989757 -88674596 - AluSx SINE Alu 0 312 1 306 249 38 115 chr1 153989757 153989873 -88674480 - LTR40b LTR ERVL -143 319 196 279 197 221 74 chr1 153990086 153990208 -88674145 - LTR40a LTR ERVL -378 141 2 23 0 0 0 chr1 153990223 153990246 -88674107 + AT_rich Low_complexity Low_complexity 1 23 0 1222 124 79 20 chr1 153990687 153990889 -88673464 - AluJb SINE Alu -14 298 85 564 250 50 6 chr1 153990905 153991065 -88673288 - L1MEc LINE L1 -4521 1875 1709 1621 173 0 11 chr1 153991065 153991349 -88673004 - AluJb SINE Alu -3 309 29 215 59 0 29 chr1 153991388 153991422 -88672931 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 200 111 0 28 chr1 153992011 153992047 -88672306 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 251 299 175 11 chr1 153992185 153992362 -88671991 - L1ME LINE L1 -295 5826 5621 212 253 101 30 chr1 153992432 153992531 -88671822 + MIR SINE MIR 120 225 -37 578 254 24 49 chr1 153992569 153992774 -88671579 + LTR4 LTR ERV1 1 200 -396 822 222 35 53 chr1 153992951 153993235 -88671118 + LTR4 LTR ERV1 318 596 0 367 286 49 108 chr1 153993880 153994133 -88670220 + L2 LINE L2 3044 3280 -33 3252 50 76 19 chr1 153994133 153994553 -88669800 - MLT2A1 LTR ERVL 0 444 1 367 286 49 108 chr1 153994553 153994586 -88669767 + L2 LINE L2 3280 3313 0 337 252 25 50 chr1 153994942 153995061 -88669292 + MIR SINE MIR 69 184 -78 1765 164 0 27 chr1 153995215 153995514 -88668839 - AluJb SINE Alu -21 291 1 206 244 22 0 chr1 153995708 153995753 -88668600 - L2 LINE L2 -5 3267 3222 310 92 10 245 chr1 153995821 153995881 -88668472 - MSTD LTR MaLR -2 394 364 2180 122 7 0 chr1 153995881 153996184 -88668169 - AluSx SINE Alu -7 305 1 310 92 10 245 chr1 153996184 153996221 -88668132 - MSTD LTR MaLR -32 364 320 271 293 0 0 chr1 153996661 153996736 -88667617 - L1M4 LINE L1 -1273 4873 4799 4323 224 91 38 chr1 153997024 153997229 -88667124 + L1MC4 LINE L1 6450 6643 -1399 333 0 0 0 chr1 153997229 153997266 -88667087 + (TG)n Simple_repeat Simple_repeat 2 38 0 4323 224 91 38 chr1 153997266 153998293 -88666060 + L1MC4 LINE L1 6643 7747 -295 180 176 0 0 chr1 153998743 153998777 -88665576 + GA-rich Low_complexity Low_complexity 1 34 0 314 143 16 0 chr1 153998795 153998858 -88665495 + CT-rich Low_complexity Low_complexity 1 64 0 2079 120 0 17 chr1 153999375 153999675 -88664678 - AluSx SINE Alu -17 295 1 209 128 0 85 chr1 153999747 153999794 -88664559 - MIR SINE MIR 0 262 220 183 156 0 89 chr1 153999760 153999805 -88664548 - L2 LINE L2 -19 3294 3254 * 207 0 0 0 chr1 153999812 153999835 -88664518 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 479 240 39 0 chr1 153999934 154000038 -88664315 - MER81 DNA DNA -5 109 2 198 0 0 0 chr1 154000074 154000096 -88664257 + (CAT)n Simple_repeat Simple_repeat 2 23 0 2364 276 123 7 chr1 154000309 154001124 -88663229 + L2 LINE L2 2068 2976 -338 739 232 7 0 chr1 154001138 154001280 -88663073 - MER45A DNA AcHobo 0 178 36 524 256 94 30 chr1 154001340 154001543 -88662810 + L2 LINE L2 3097 3312 -1 509 209 0 15 chr1 154001570 154001704 -88662649 + GA-rich Low_complexity Low_complexity 4 135 0 7622 22 0 0 chr1 154002003 154002868 -88661485 - L1PA4 LINE L1 -1 6154 5290 982 177 30 39 chr1 154003435 154003544 -88660809 + MER20 DNA MER1_type 19 127 -92 2023 211 6 0 chr1 154003544 154003905 -88660448 - MLT1A1 LTR MaLR 0 365 3 982 177 30 39 chr1 154003905 154003998 -88660355 + MER20 DNA MER1_type 127 219 0 225 0 0 0 chr1 154004211 154004236 -88660117 + (TG)n Simple_repeat Simple_repeat 1 25 0 182 114 0 29 chr1 154004253 154004288 -88660065 + (GA)n Simple_repeat Simple_repeat 1 34 0 797 306 171 8 chr1 154004557 154005046 -88659307 + L2 LINE L2 2739 3312 -1 818 129 0 0 chr1 154005516 154005632 -88658721 - AluSg/x SINE Alu -18 292 177 6126 121 14 32 chr1 154005632 154006841 -88657512 + L1PB1 LINE L1 4956 6150 -1 431 259 150 81 chr1 154006845 154006965 -88657388 - L1MC/D LINE L1 -2037 5771 5661 1966 173 23 11 chr1 154006965 154007317 -88657036 - L1PA16 LINE L1 -5 6161 5806 431 259 150 81 chr1 154007317 154007629 -88656724 - L1MC/D LINE L1 -2147 5661 5309 392 265 123 51 chr1 154007875 154007937 -88656416 - L1MC/D LINE L1 -755 5391 5335 1966 173 23 11 chr1 154007937 154008289 -88656064 - L1PA16 LINE L1 -5 6161 5806 392 265 123 51 chr1 154008289 154008701 -88655652 - L1MC/D LINE L1 -811 5335 5210 1420 160 89 22 chr1 154008927 154009196 -88655157 - AluJo SINE Alu -24 288 2 358 309 39 49 chr1 154010101 154010305 -88654048 - HAL1 LINE L1 -116 2391 2190 2304 100 3 7 chr1 154010344 154010654 -88653699 - AluSq SINE Alu -4 309 1 346 263 15 75 chr1 154010725 154010858 -88653495 - HAL1b LINE L1 -494 854 730 233 333 0 0 chr1 154010911 154010965 -88653388 - L2 LINE L2 -97 3175 3122 1676 145 12 92 chr1 154010967 154011305 -88653048 + AluJb SINE Alu 1 311 -1 23 0 0 0 chr1 154011697 154011720 -88652633 + AT_rich Low_complexity Low_complexity 1 23 0 231 172 97 108 chr1 154012239 154012332 -88652021 + MER112 DNA MER1_type 32 123 -137 22 0 0 0 chr1 154012430 154012452 -88651901 + AT_rich Low_complexity Low_complexity 1 22 0 1126 198 152 19 chr1 154012452 154012715 -88651638 - AluY SINE Alu 0 311 14 983 151 13 0 chr1 154012731 154012883 -88651470 - AluJb SINE Alu -6 306 153 1697 136 0 29 chr1 154012887 154013160 -88651193 - AluJo SINE Alu -17 295 31 1403 169 7 26 chr1 154013218 154013490 -88650863 - L1MA9 LINE L1 0 6312 6046 1313 192 44 4 chr1 154013498 154013748 -88650605 - AluJo SINE Alu -19 293 34 744 172 0 23 chr1 154013980 154014108 -88650245 + AluJo/FLAM SINE Alu 1 125 -177 338 71 0 0 chr1 154014111 154014153 -88650200 + AluSq SINE Alu 131 172 -131 1393 106 0 5 chr1 154014153 154014341 -88650012 + AluSq SINE Alu 114 300 -13 2130 194 61 67 chr1 154014537 154014819 -88649534 - L1MC5 LINE L1 -435 7526 7244 359 71 0 18 chr1 154014819 154014875 -88649478 + (TG)n Simple_repeat Simple_repeat 2 56 0 2130 194 61 67 chr1 154014875 154015283 -88649070 - L1MC5 LINE L1 -717 7244 6840 1458 190 54 65 chr1 154015283 154015974 -88648379 + LTR13 LTR ERVK 1 737 -270 1029 91 13 13 chr1 154015969 154016123 -88648230 + LTR13 LTR ERVK 854 1007 0 * 862 222 113 16 chr1 154016145 154016402 -88647951 - L1MC4a LINE L1 -985 6823 6542 2160 90 0 0 chr1 154017093 154017361 -88646992 - AluSx SINE Alu -44 268 1 3951 229 99 64 chr1 154017365 154018979 -88645374 - L1MEc LINE L1 -4683 1713 43 190 370 24 24 chr1 154019209 154019336 -88645017 + L2 LINE L2 2636 2762 -552 333 294 32 63 chr1 154019627 154019753 -88644600 - MIR SINE MIR -96 166 45 613 242 136 10 chr1 154022131 154022329 -88642024 + MIR SINE MIR 3 225 -37 27 73 0 0 chr1 154023183 154023238 -88641115 + AT_rich Low_complexity Low_complexity 1 55 0 392 270 51 15 chr1 154023659 154023796 -88640557 + MIR SINE MIR 74 215 -47 2979 68 6 0 chr1 154023885 154024236 -88640117 + THE1A LTR MaLR 1 353 -2 269 307 101 28 chr1 154025137 154025316 -88639037 + L2 LINE L2 2892 3083 -189 2271 154 43 5 chr1 154025580 154025956 -88638397 - MLT1B LTR MaLR 0 390 1 2046 138 0 3 chr1 154026569 154026860 -88637493 - AluSx SINE Alu -22 290 1 248 208 75 0 chr1 154027087 154027140 -88637213 - L3b LINE CR1 -8 1575 1519 1725 144 3 43 chr1 154027148 154027447 -88636906 - AluJo SINE Alu -25 287 1 309 270 66 42 chr1 154027522 154027659 -88636694 - MIR SINE MIR -61 147 30 2325 103 0 3 chr1 154027954 154028264 -88636089 - AluSc SINE Alu 0 309 1 780 249 72 5 chr1 154029123 154029332 -88635021 - MIR SINE MIR 0 262 40 2672 42 3 0 chr1 154029991 154030301 -88634052 + AluY SINE Alu 1 311 0 353 270 51 15 chr1 154031502 154031639 -88632714 + MIR SINE MIR 74 215 -47 2838 68 6 0 chr1 154031728 154032079 -88632274 + THE1A LTR MaLR 1 353 -2 1289 174 5 5 chr1 154032873 154033091 -88631262 - AluJo SINE Alu -10 302 85 304 243 0 0 chr1 154033532 154033602 -88630751 - L1MC2 LINE L1 -19 6325 6256 3568 154 106 61 chr1 154033608 154034525 -88629828 - L1MC4 LINE L1 -75 7967 7010 2102 124 0 0 chr1 154034525 154034851 -88629502 - AluSg SINE Alu 0 326 1 1192 115 0 35 chr1 154034851 154035025 -88629328 - AluSg/x SINE Alu -11 301 134 2443 99 0 0 chr1 154035025 154035328 -88629025 - AluY SINE Alu -8 303 1 950 174 89 5 chr1 154035328 154035518 -88628835 - L1MC4 LINE L1 -1030 7012 6807 1688 143 55 4 chr1 154035541 154035814 -88628539 - AluJb SINE Alu -25 287 1 3522 187 32 65 chr1 154036626 154037525 -88626828 - L1MC4a LINE L1 -1066 6742 5873 2076 133 3 10 chr1 154037685 154037993 -88626360 - AluSx SINE Alu -5 307 2 1344 144 51 13 chr1 154038022 154038193 -88626160 - L1M2 LINE L1 -524 5788 5604 2317 97 3 7 chr1 154038193 154038501 -88625852 - AluSx SINE Alu -5 307 1 1344 144 51 13 chr1 154038501 154038565 -88625788 - L1M2 LINE L1 -708 5604 5544 225 0 0 0 chr1 154038565 154038590 -88625763 + (T)n Simple_repeat Simple_repeat 1 25 0 3324 103 101 0 chr1 154038590 154039086 -88625267 - MER41B LTR ERV1 -89 546 1 1669 83 18 5 chr1 154039086 154039303 -88625050 - MER41B-int LTR ERV1 -2 5944 5725 630 152 0 0 chr1 154039295 154039387 -88624966 - MER41A-int LTR ERV1 -7664 92 1 * 1127 60 40 0 chr1 154039387 154039536 -88624817 - MER41A LTR ERV1 0 554 400 1660 149 20 23 chr1 154039536 154039837 -88624516 - L1M2 LINE L1 -751 5561 5262 4256 142 17 53 chr1 154039841 154039890 -88624463 - L1MB3 LINE L1 0 6183 6134 381 22 0 0 chr1 154039890 154039936 -88624417 + (TG)n Simple_repeat Simple_repeat 2 47 0 2055 170 0 0 chr1 154039938 154040250 -88624103 - AluJb SINE Alu 0 312 1 4256 142 17 53 chr1 154040250 154040463 -88623890 - L1MB3 LINE L1 -50 6133 5562 914 287 46 57 chr1 154040463 154040610 -88623743 - L1ME4a LINE L1 -188 5933 5786 238 48 0 48 chr1 154040610 154040652 -88623701 + (CA)n Simple_repeat Simple_repeat 2 41 0 914 287 46 57 chr1 154040652 154041155 -88623198 - L1ME4a LINE L1 -335 5786 5290 593 200 42 48 chr1 154041676 154041800 -88622553 - L1MC4a LINE L1 -2262 5546 5423 180 111 0 0 chr1 154041800 154041827 -88622526 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1788 169 7 3 chr1 154041830 154042114 -88622239 - AluSx SINE Alu -27 285 1 593 200 42 48 chr1 154042114 154042150 -88622203 - L1MC4a LINE L1 -2387 5421 5383 621 305 50 44 chr1 154042216 154042475 -88621878 - L1MC4a LINE L1 -858 5288 5023 1763 164 0 15 chr1 154042475 154042749 -88621604 - AluJb SINE Alu -38 274 5 621 305 50 44 chr1 154042749 154042967 -88621386 - L1MC4a LINE L1 -1123 5023 4808 25 0 0 0 chr1 154044247 154044272 -88620081 + AT_rich Low_complexity Low_complexity 1 25 0 2282 167 62 0 chr1 154044316 154044717 -88619636 - MSTB LTR MaLR 0 426 1 865 158 116 0 chr1 154045272 154045436 -88618917 + AluJo SINE Alu 1 183 -129 393 225 62 44 chr1 154045923 154046083 -88618270 - L1ME4a LINE L1 -282 5839 5677 4486 139 24 7 chr1 154046476 154047223 -88617130 - L1MB7 LINE L1 -9 6175 5416 1417 183 44 12 chr1 154047223 154047562 -88616791 - L1ME4a LINE L1 -935 5211 4862 333 307 74 62 chr1 154047956 154048132 -88616221 + MER5B DNA MER1_type 1 178 0 758 79 0 10 chr1 154050220 154050321 -88614032 + HY3 scRNA scRNA 1 100 -1 1534 108 22 30 chr1 154051250 154051482 -88612871 - MER30 DNA MER1_type 0 230 1 1908 182 66 110 chr1 154051638 154052280 -88612073 + MER21A LTR ERV1 1 495 -368 1765 156 0 25 chr1 154052280 154052563 -88611790 - AluJb SINE Alu -36 276 1 1908 182 66 110 chr1 154052563 154052907 -88611446 + MER21A LTR ERV1 495 852 -11 1364 199 51 33 chr1 154053012 154053344 -88611009 - MLT1D LTR MaLR 0 505 168 1671 151 37 0 chr1 154053357 154053628 -88610725 + AluJo SINE Alu 14 294 -18 357 230 197 26 chr1 154053735 154053827 -88610526 - MER5B DNA MER1_type 0 178 103 2245 96 0 52 chr1 154053827 154054151 -88610202 - AluSp SINE Alu -6 307 1 357 230 197 26 chr1 154054151 154054210 -88610143 - MER5B DNA MER1_type -75 103 1 752 177 140 16 chr1 154054219 154054405 -88609948 - MER3 DNA MER1_type 0 209 1 415 261 39 15 chr1 154054625 154054755 -88609598 - MIR SINE MIR -49 213 81 2262 127 16 33 chr1 154055192 154055481 -88608872 - MER47A DNA MER2_type -1966 357 74 2218 120 7 0 chr1 154055481 154055781 -88608572 - AluSx SINE Alu -10 302 1 2262 127 16 33 chr1 154055781 154055854 -88608499 - MER47A DNA MER2_type -2249 74 1 182 259 86 17 chr1 154056362 154056420 -88607933 + MIR SINE MIR 7 68 -194 554 106 211 0 chr1 154056430 154056534 -88607819 + MER3 DNA MER1_type 84 209 0 270 318 153 9 chr1 154056535 154056758 -88607595 - L3 LINE CR1 -561 1016 762 1581 167 0 12 chr1 154056788 154057040 -88607313 - AluJo SINE Alu -17 295 47 677 237 97 34 chr1 154057882 154058089 -88606264 + MIR SINE MIR 29 248 -14 2095 145 0 0 chr1 154058204 154058500 -88605853 - AluJo SINE Alu -16 296 1 586 281 86 45 chr1 154060104 154060524 -88603829 + L2 LINE L2 2816 3252 -61 286 351 54 9 chr1 154060582 154060804 -88603549 + MIR SINE MIR 25 256 -6 2133 103 38 3 chr1 154061000 154061291 -88603062 - AluSx SINE Alu -11 301 1 251 317 171 8 chr1 154061952 154062075 -88602278 - L3 LINE CR1 -19 1558 1416 22 0 0 0 chr1 154063236 154063258 -88601095 + AT_rich Low_complexity Low_complexity 1 22 0 307 181 12 12 chr1 154063500 154063583 -88600770 + GA-rich Low_complexity Low_complexity 1 83 0 244 250 38 25 chr1 154064015 154064095 -88600258 - MIR SINE MIR -148 114 34 2379 98 0 0 chr1 154064242 154064537 -88599816 - AluSq SINE Alu -18 295 1 937 172 278 4 chr1 154064957 154065184 -88599169 + AluJo SINE Alu 7 295 -17 181 250 0 0 chr1 154065373 154065417 -88598936 - MIR SINE MIR -106 156 113 6342 110 33 118 chr1 154067119 154067850 -88596503 + Tigger3b DNA MER2_type 22 593 -2435 2224 122 0 6 chr1 154067850 154068161 -88596192 + AluSx SINE Alu 1 309 -3 6342 110 33 118 chr1 154068161 154068751 -88595602 + Tigger3b DNA MER2_type 593 1231 0 890 286 59 20 chr1 154068774 154068839 -88595514 + L1ME4a LINE L1 5522 5583 -538 1613 156 12 98 chr1 154068839 154069019 -88595334 - AluJo SINE Alu -12 300 159 2020 133 7 7 chr1 154069019 154069327 -88595026 - AluSx SINE Alu -4 308 1 1613 156 12 98 chr1 154069327 154069474 -88594879 - AluJo SINE Alu -153 159 1 890 286 59 20 chr1 154069474 154069800 -88594553 + L1ME4a LINE L1 5583 5928 -193 756 276 22 13 chr1 154070080 154070308 -88594045 + MIR SINE MIR 32 261 -1 352 317 84 7 chr1 154070631 154070773 -88593580 - L2 LINE L2 0 3313 3161 427 217 45 64 chr1 154071538 154071695 -88592658 - L2 LINE L2 0 3313 3160 2036 109 4 0 chr1 154071717 154071991 -88592362 - AluSq SINE Alu -18 295 21 2046 112 11 7 chr1 154072339 154072626 -88591727 - AluSx SINE Alu -24 288 1 432 172 11 0 chr1 154072642 154072729 -88591624 + L1MA6 LINE L1 6212 6299 -1 705 202 0 0 chr1 154072740 154072859 -88591494 + FLAM_A SINE Alu 1 119 -14 201 121 0 0 chr1 154074306 154074339 -88590014 + (GA)n Simple_repeat Simple_repeat 1 33 0 294 299 28 35 chr1 154074456 154074600 -88589753 - L2 LINE L2 -330 2983 2841 810 197 73 43 chr1 154074633 154074867 -88589486 - MIR SINE MIR -21 241 1 22 0 0 0 chr1 154075540 154075562 -88588791 + AT_rich Low_complexity Low_complexity 1 22 0 36 40 0 0 chr1 154075586 154075636 -88588717 + AT_rich Low_complexity Low_complexity 1 50 0 318 311 73 12 chr1 154078751 154078915 -88585438 + L1MEc LINE L1 1582 1755 -5070 847 172 0 15 chr1 154078916 154079050 -88585303 + FLAM_C SINE Alu 1 132 -1 240 299 65 9 chr1 154079066 154079157 -88585196 + L1MEc LINE L1 1592 1676 -4968 2234 110 3 10 chr1 154079157 154079465 -88584888 + AluSx SINE Alu 1 306 -6 240 299 65 9 chr1 154079465 154079480 -88584873 + L1MEc LINE L1 1676 1802 -4842 2301 90 10 7 chr1 154079677 154079978 -88584375 + AluSg SINE Alu 1 302 -8 1633 228 126 88 chr1 154080768 154082019 -88582334 + L1MC5 LINE L1 6571 7773 -188 402 21 0 0 chr1 154082019 154082066 -88582287 + (TC)n Simple_repeat Simple_repeat 2 48 0 216 0 0 0 chr1 154082065 154082089 -88582264 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 1633 228 126 88 chr1 154082066 154082139 -88582214 + L1MC5 LINE L1 7773 7924 -37 24 0 0 0 chr1 154082911 154082935 -88581418 + AT_rich Low_complexity Low_complexity 1 24 0 226 225 63 54 chr1 154083343 154083454 -88580899 - L2 LINE L2 -20 3293 3182 712 255 28 33 chr1 154083493 154083705 -88580648 + MIR SINE MIR 5 215 -47 449 264 134 10 chr1 154083824 154084037 -88580316 - L1MEc LINE L1 -4286 1930 1514 34 0 0 0 chr1 154084313 154084347 -88580006 + AT_rich Low_complexity Low_complexity 1 34 0 2496 55 10 0 chr1 154085303 154085595 -88578758 - AluY SINE Alu -16 295 1 974 201 5 20 chr1 154085595 154085799 -88578554 - MLT2D LTR ERVL -213 201 1 246 309 0 12 chr1 154085801 154085882 -88578471 - L1M4 LINE L1 -1208 4938 4859 1600 149 17 40 chr1 154086070 154086371 -88577982 + AluSx SINE Alu 12 305 -7 2252 102 3 13 chr1 154086560 154086863 -88577490 - AluSx SINE Alu -12 300 1 404 317 11 77 chr1 154086875 154087058 -88577295 - MIR3 SINE MIR -19 189 19 2186 41 7 51 chr1 154087283 154087611 -88576742 + AluY SINE Alu 1 315 0 1721 165 10 3 chr1 154087844 154088135 -88576218 - AluJb SINE Alu -19 293 1 2356 85 0 3 chr1 154088148 154088441 -88575912 - AluSc SINE Alu -17 292 1 261 328 0 0 chr1 154088539 154088606 -88575747 - L2 LINE L2 0 3272 3206 22 0 0 0 chr1 154088843 154088865 -88575488 + AT_rich Low_complexity Low_complexity 1 22 0 229 211 0 0 chr1 154089606 154089658 -88574695 + A-rich Low_complexity Low_complexity 1 52 0 261 0 0 0 chr1 154089719 154089748 -88574605 + (TC)n Simple_repeat Simple_repeat 2 30 0 1560 139 13 4 chr1 154089797 154090035 -88574318 + L1MC1 LINE L1 6093 6332 -1 482 225 63 21 chr1 154090237 154090379 -88573974 - MIR SINE MIR 0 262 115 1599 107 144 15 chr1 154090592 154090862 -88573491 + AluSg1 SINE Alu 1 305 -4 289 261 0 11 chr1 154092959 154093047 -88571306 + HY3 scRNA scRNA 1 87 -14 202 240 0 62 chr1 154093221 154093317 -88571036 + (CGGGG)n Simple_repeat Simple_repeat 2 91 0 * 222 224 0 15 chr1 154093253 154093320 -88571033 + (GGGTG)n Simple_repeat Simple_repeat 1 66 0 2138 105 3 20 chr1 154093585 154093891 -88570462 + AluSp SINE Alu 1 301 -12 375 311 62 116 chr1 154093892 154094358 -88569995 - L2 LINE L2 -25 3247 2807 478 261 237 29 chr1 154094641 154094848 -88569505 - MIR SINE MIR 0 262 13 326 362 67 3 chr1 154094858 154095140 -88569213 - L2 LINE L2 -1080 2234 1935 220 380 97 26 chr1 154095318 154095700 -88568653 + L2 LINE L2 2478 2886 -428 188 345 42 49 chr1 154095754 154095896 -88568457 + L2 LINE L2 2949 3089 -183 472 251 114 12 chr1 154098164 154098331 -88566022 - MIR SINE MIR -59 203 20 339 282 0 29 chr1 154099812 154099915 -88564438 + MARNA DNA Mariner 475 574 -12 276 246 77 101 chr1 154099929 154099979 -88564374 - MLT1K LTR MaLR 0 588 538 1796 154 133 9 chr1 154099979 154100303 -88564050 - MLT1A1 LTR MaLR 0 365 2 276 246 77 101 chr1 154100303 154100459 -88563894 - MLT1K LTR MaLR -50 538 387 303 244 56 22 chr1 154100556 154100646 -88563707 + MIR SINE MIR 105 197 -65 244 259 122 38 chr1 154100707 154100838 -88563515 + MIR SINE MIR 119 260 -2 462 267 148 24 chr1 154101182 154101392 -88562961 - MARNA DNA Mariner -174 412 177 220 192 39 0 chr1 154101456 154101508 -88562845 + (TA)n Simple_repeat Simple_repeat 2 55 0 278 258 45 0 chr1 154101517 154101606 -88562747 - L1MC4 LINE L1 -1336 6706 6614 253 245 0 43 chr1 154101528 154101622 -88562731 + L1MC4 LINE L1 6614 6703 -1339 * 249 303 0 0 chr1 154101632 154101721 -88562632 - L1MC4 LINE L1 -1339 6703 6615 * 265 292 0 0 chr1 154101692 154101781 -88562572 - L1MC4 LINE L1 -1339 6703 6615 234 161 0 71 chr1 154101746 154101802 -88562551 + L1MC4 LINE L1 6652 6703 -1339 * 269 279 47 0 chr1 154101872 154101958 -88562395 - L1MC4 LINE L1 -1339 6703 6614 250 296 23 0 chr1 154101984 154102072 -88562281 - L1MC4 LINE L1 -1339 6703 6614 466 217 0 28 chr1 154102074 154102217 -88562136 + (CATA)n Simple_repeat Simple_repeat 2 140 0 231 173 0 58 chr1 154102227 154102279 -88562074 - L1MCa LINE L1 -4362 2064 2016 613 181 15 0 chr1 154102279 154102412 -88561941 + (TA)n Simple_repeat Simple_repeat 1 135 0 929 224 48 0 chr1 154103905 154104070 -88560283 - FAM SINE Alu 0 175 3 351 223 194 43 chr1 154104141 154104280 -88560073 - MIR SINE MIR -78 184 25 186 372 12 0 chr1 154104445 154104531 -88559822 - MER5A DNA MER1_type -1 188 102 320 207 0 23 chr1 154104626 154104713 -88559640 + CT-rich Low_complexity Low_complexity 4 88 0 227 250 183 0 chr1 154105556 154105616 -88558737 + MIR SINE MIR 28 98 -164 1134 82 82 0 chr1 154105618 154105776 -88558577 - AluSg/x SINE Alu -13 299 129 193 238 0 0 chr1 154105783 154105825 -88558528 + MIR SINE MIR 111 152 -110 336 258 26 121 chr1 154106475 154106665 -88557688 + MER5B DNA MER1_type 3 174 -4 3851 200 51 17 chr1 154107216 154108890 -88555463 - L1MB8 LINE L1 -6 6172 4439 199 217 150 0 chr1 154109053 154109113 -88555240 + MIR SINE MIR 83 151 -111 466 299 52 11 chr1 154109362 154109536 -88554817 - MIR SINE MIR -71 191 11 408 295 129 28 chr1 154110110 154110317 -88554036 + MIR SINE MIR 10 235 -27 294 251 101 78 chr1 154110404 154110481 -88553872 - MLT1I LTR MaLR 0 450 376 1579 197 10 7 chr1 154110481 154110776 -88553577 + AluJo SINE Alu 6 301 -11 294 251 101 78 chr1 154110776 154110995 -88553358 - MLT1I LTR MaLR -74 376 101 927 338 150 22 chr1 154111245 154112161 -88552192 + L2 LINE L2 2035 3085 -187 2289 105 6 10 chr1 154112419 154112733 -88551620 + AluSq SINE Alu 1 313 0 294 368 42 7 chr1 154112739 154112883 -88551470 - MIR3 SINE MIR -24 184 36 243 275 101 56 chr1 154112939 154113117 -88551236 - MIR SINE MIR -6 256 71 2407 78 7 0 chr1 154113511 154113817 -88550536 - AluSq SINE Alu -5 308 1 262 315 34 60 chr1 154114279 154114428 -88549925 + MIR3 SINE MIR 2 146 -62 339 308 10 10 chr1 154114911 154115015 -88549338 - L2 LINE L2 -27 3286 3183 696 214 20 89 chr1 154115162 154115410 -88548943 - L2 LINE L2 -351 2963 2733 2356 92 0 13 chr1 154115508 154115823 -88548530 - AluY SINE Alu 0 311 1 845 292 74 25 chr1 154115891 154116336 -88548017 - L1ME LINE L1 -397 5724 5258 502 279 37 0 chr1 154116353 154116489 -88547864 - MIR3 SINE MIR -14 194 54 286 302 35 23 chr1 154116729 154116815 -88547538 - MER5A DNA MER1_type -2 187 101 248 337 63 11 chr1 154117028 154117123 -88547230 + L2 LINE L2 2976 3075 -197 689 271 97 16 chr1 154117298 154117556 -88546797 - HAL1 LINE L1 -1 2506 2228 504 335 44 30 chr1 154117708 154118004 -88546349 + L2 LINE L2 2455 2754 -560 431 235 47 48 chr1 154118111 154118366 -88545987 + MLT1I LTR MaLR 123 409 0 582 300 87 85 chr1 154118381 154118841 -88545512 + L2 LINE L2 2804 3264 -8 547 183 77 161 chr1 154118951 154119236 -88545117 + MIR SINE MIR 1 261 -1 1256 159 51 23 chr1 154119248 154119505 -88544848 + L1MD3 LINE L1 7730 7993 -2 444 256 45 23 chr1 154119526 154119659 -88544694 - MIR SINE MIR -69 193 58 268 252 54 13 chr1 154119783 154119882 -88544471 - MIR SINE MIR -111 97 4 322 257 147 18 chr1 154120170 154120279 -88544074 + MIR SINE MIR 1 123 -139 269 316 184 0 chr1 154120489 154120657 -88543696 + MIR SINE MIR 63 261 -1 678 186 174 0 chr1 154121493 154121654 -88542699 + MER5A DNA MER1_type 1 189 0 395 295 53 33 chr1 154122207 154122382 -88541971 + MIR SINE MIR 16 191 -71 475 253 136 0 chr1 154122583 154122737 -88541616 - MIR SINE MIR 0 262 88 203 423 10 20 chr1 154124085 154124286 -88540067 + L2 LINE L2 2866 3064 -208 1625 228 65 77 chr1 154124500 154124692 -88539661 - L1MEc LINE L1 -3272 2943 2750 3656 170 22 3 chr1 154124692 154125286 -88539067 + MER6A DNA MER2_type 1 605 0 1625 228 65 77 chr1 154125286 154125500 -88538853 - L1MEc LINE L1 -3465 2750 2535 2406 88 0 0 chr1 154125500 154125795 -88538558 - AluSq SINE Alu -18 295 1 1625 228 65 77 chr1 154125795 154126225 -88538128 - L1MEc LINE L1 -3680 2535 2153 252 292 58 50 chr1 154126331 154126451 -88537902 - MIR SINE MIR -20 242 122 302 271 0 0 chr1 154126505 154126575 -88537778 + MER91B DNA MER1_type 3 72 -118 273 250 169 52 chr1 154127286 154127422 -88536931 + L2 LINE L2 3158 3309 -4 307 129 271 29 chr1 154127796 154127866 -88536487 + L2 LINE L2 3208 3294 -19 922 206 81 10 chr1 154128208 154128417 -88535936 + MER58A DNA MER1_type 1 224 0 1266 269 135 28 chr1 154129081 154129906 -88534447 + L2 LINE L2 2412 3310 -3 1377 181 54 14 chr1 154130171 154130447 -88533906 + AluJb SINE Alu 1 326 0 352 0 0 0 chr1 154130447 154130486 -88533867 + (CAA)n Simple_repeat Simple_repeat 2 180 0 517 301 98 22 chr1 154130702 154130943 -88533410 - MIR SINE MIR 0 262 10 828 335 137 28 chr1 154131229 154132079 -88532274 + L2 LINE L2 1562 2503 -811 326 302 198 0 chr1 154132073 154132189 -88532164 - L2 LINE L2 0 3272 3134 * 191 291 95 47 chr1 154132274 154132422 -88531931 + L2 LINE L2 2507 2661 -653 204 283 19 0 chr1 154132506 154132559 -88531794 - L3 LINE CR1 -104 1473 1420 413 335 79 6 chr1 154133940 154134104 -88530249 - MIR3 SINE MIR -12 196 21 964 200 51 0 chr1 154134393 154134588 -88529765 - MER3 DNA MER1_type 0 209 5 695 297 29 24 chr1 154136090 154136336 -88528017 - MIR SINE MIR -14 248 2 256 132 0 94 chr1 154136550 154136603 -88527750 + L2 LINE L2 3265 3312 -1 285 214 0 50 chr1 154137167 154137349 -88527004 + (TATG)n Simple_repeat Simple_repeat 1 173 0 261 336 176 0 chr1 154137663 154137794 -88526559 + MIR SINE MIR 1 154 -108 483 237 145 0 chr1 154138631 154138762 -88525591 - MER96 DNA MER1_type? -25 150 1 455 277 27 11 chr1 154139666 154139833 -88524520 - MIR SINE MIR -62 146 7 224 176 78 20 chr1 154141880 154141931 -88522422 + L2 LINE L2 3214 3267 -5 284 330 0 10 chr1 154143061 154143158 -88521195 + MIR3 SINE MIR 81 176 -32 1028 98 0 28 chr1 154143217 154143360 -88520993 - AluSq SINE Alu -56 257 119 2048 92 0 0 chr1 154143360 154143611 -88520742 - AluSg SINE Alu -59 251 1 198 346 115 0 chr1 154144081 154144159 -88520194 + MIR3 SINE MIR 109 195 -13 214 333 29 10 chr1 154145209 154145311 -88519042 + MIR SINE MIR 82 185 -77 457 291 64 12 chr1 154145367 154145539 -88518814 - MIR SINE MIR -73 189 9 283 218 11 11 chr1 154145749 154145836 -88518517 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 1810 179 3 3 chr1 154146342 154146638 -88517715 + AluJb SINE Alu 1 296 -16 661 285 32 28 chr1 154147355 154147604 -88516749 + MIR SINE MIR 5 254 -8 539 231 88 52 chr1 154147783 154148034 -88516319 - MIR SINE MIR -1 261 2 204 222 56 0 chr1 154148318 154148372 -88515981 + MIR SINE MIR 86 142 -120 226 350 50 10 chr1 154148417 154148517 -88515836 + L2 LINE L2 3208 3311 -2 193 315 62 69 chr1 154149326 154149456 -88514897 + L2 LINE L2 2724 2852 -462 316 377 101 42 chr1 154149520 154149828 -88514525 + L2 LINE L2 2942 3267 -5 413 284 180 18 chr1 154150135 154150357 -88513996 + MIR SINE MIR 5 262 0 773 138 46 23 chr1 154151079 154151209 -88513144 + FLAM_C SINE Alu 1 133 0 207 0 0 0 chr1 154151236 154151259 -88513094 + (T)n Simple_repeat Simple_repeat 1 23 0 463 286 60 15 chr1 154151583 154151716 -88512637 + MIR3 SINE MIR 2 140 -68 1146 253 114 27 chr1 154152488 154152980 -88511373 + L2 LINE L2 2774 3309 -4 731 319 85 0 chr1 154152983 154153265 -88511088 - L2 LINE L2 -1009 2305 2000 514 217 98 35 chr1 154153281 154153424 -88510929 - L1P3 LINE L1 -351 5821 5670 182 363 50 0 chr1 154153675 154153755 -88510598 - MIR SINE MIR -102 106 23 235 277 178 0 chr1 154153867 154153968 -88510385 + MIR SINE MIR 22 140 -122 324 209 173 9 chr1 154154381 154154491 -88509862 - L1ME4a LINE L1 -40 6081 5954 207 204 0 0 chr1 154154887 154154931 -88509422 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 25 51 0 0 chr1 154154934 154154973 -88509380 + AT_rich Low_complexity Low_complexity 1 39 0 232 221 74 25 chr1 154155003 154155166 -88509187 + (TA)n Simple_repeat Simple_repeat 2 172 0 23 54 0 0 chr1 154155185 154155222 -88509131 + AT_rich Low_complexity Low_complexity 1 37 0 344 151 88 19 chr1 154155224 154155383 -88508970 + (TA)n Simple_repeat Simple_repeat 2 171 0 521 331 66 16 chr1 154155487 154155865 -88508488 - L1ME LINE L1 -388 5733 5337 828 109 8 0 chr1 154156042 154156161 -88508192 - THE1B LTR MaLR -49 315 196 1661 164 11 14 chr1 154156218 154156499 -88507854 - AluJo SINE Alu -32 280 1 224 280 128 24 chr1 154156664 154156789 -88507564 + MIR SINE MIR 59 196 -66 2283 46 7 0 chr1 154158332 154158643 -88505710 - AluY SINE Alu 0 313 1 211 275 29 101 chr1 154159182 154159320 -88505033 - L2 LINE L2 -150 3122 2995 258 226 23 0 chr1 154160558 154160629 -88503724 - MLT1I LTR MaLR -7 443 322 430 256 59 50 chr1 154160729 154161001 -88503352 - MLT1H LTR MaLR -230 319 1 241 274 13 131 chr1 154161001 154161117 -88503236 - MIR SINE MIR -60 202 107 1454 167 68 21 chr1 154161117 154161398 -88502955 + AluJo SINE Alu 2 295 -17 241 274 13 131 chr1 154161398 154161434 -88502919 - MIR SINE MIR -155 107 68 317 264 11 0 chr1 154161757 154161844 -88502509 - MLT1J2 LTR MaLR -2 448 361 * 442 169 0 13 chr1 154161836 154161913 -88502440 - MLT1J2 LTR MaLR -320 130 55 299 330 104 54 chr1 154162080 154162377 -88501976 + L2 LINE L2 2664 2975 -339 1457 233 79 9 chr1 154162469 154162936 -88501417 + L1MEc LINE L1 1318 1817 -4579 293 278 35 9 chr1 154162930 154163045 -88501308 - L1MCc LINE L1 -5118 1823 1706 * 1696 170 0 11 chr1 154163114 154163390 -88500963 - AluJo SINE Alu -31 281 9 2385 233 44 22 chr1 154163398 154163804 -88500549 - L1MCc LINE L1 -4887 1536 1245 2110 160 23 14 chr1 154163804 154164148 -88500205 + MER7A DNA MER2_type 1 345 -1 2385 233 44 22 chr1 154164148 154164535 -88499818 - L1MCc LINE L1 -5178 1245 868 * 4885 165 46 18 chr1 154164522 154164791 -88499562 + L1PA16 LINE L1 4121 4381 -1785 288 0 0 0 chr1 154164791 154164823 -88499530 + (CA)n Simple_repeat Simple_repeat 1 32 0 4885 165 46 18 chr1 154164823 154166350 -88498003 + L1PA16 LINE L1 4381 5972 -194 965 102 0 0 chr1 154166350 154166477 -88497876 + AluSg SINE Alu 1 127 -183 812 68 0 0 chr1 154166477 154166580 -88497773 + AluY SINE Alu 198 300 -11 1257 160 5 10 chr1 154166580 154166780 -88497573 + L1PA16 LINE L1 5959 6157 -9 288 234 0 0 chr1 154166794 154166858 -88497495 - L1MCc LINE L1 -5533 890 827 965 326 61 19 chr1 154166959 154167535 -88496818 - L1MCc LINE L1 -5810 613 14 469 289 114 12 chr1 154167587 154167753 -88496600 + MER5A DNA MER1_type 7 189 0 1575 188 111 78 chr1 154167777 154167845 -88496508 + MER39 LTR ERV1 10 74 -633 2449 7 0 4 chr1 154167845 154168114 -88496239 + AluYa5 SINE Alu 39 306 -5 1575 188 111 78 chr1 154168114 154168511 -88495842 + MER39 LTR ERV1 74 550 -157 854 154 8 0 chr1 154168511 154168641 -88495712 - FLAM_A SINE Alu -2 131 1 1575 188 111 78 chr1 154168641 154168805 -88495548 + MER39 LTR ERV1 550 707 0 1543 198 125 47 chr1 154168843 154169378 -88494975 - MER34C LTR ERV1 -8 577 1 2399 86 0 3 chr1 154169385 154169686 -88494667 - AluSq SINE Alu -13 300 1 589 303 32 11 chr1 154169700 154169885 -88494468 - MIR SINE MIR -56 206 18 1647 144 32 11 chr1 154169887 154170172 -88494181 - L1MB7 LINE L1 -19 6165 5875 183 204 167 0 chr1 154170314 154170368 -88493985 - L2 LINE L2 -8 3305 3243 509 207 96 22 chr1 154170371 154170506 -88493847 - MER5A DNA MER1_type -25 164 20 539 271 129 0 chr1 154170536 154170691 -88493662 - MER5A DNA MER1_type -6 183 9 1895 104 4 4 chr1 154171032 154171291 -88493062 + L1PB1 LINE L1 5893 6151 0 21 36 0 0 chr1 154172959 154172987 -88491366 + AT_rich Low_complexity Low_complexity 1 28 0 1018 242 95 43 chr1 154173188 154173535 -88490818 - MLT1A1 LTR MaLR 0 365 1 332 299 6 104 chr1 154174152 154174316 -88490037 + MIR3 SINE MIR 50 197 -11 765 162 37 162 chr1 154174607 154174689 -88489664 + MER5A DNA MER1_type 1 92 -97 1450 84 16 0 chr1 154174689 154174879 -88489474 + L1PB2 LINE L1 5956 6148 -3 765 162 37 162 chr1 154174879 154175012 -88489341 + MER5A DNA MER1_type 92 189 0 509 277 43 16 chr1 154175098 154175286 -88489067 + MARNA DNA Mariner 288 480 -106 797 197 0 8 chr1 154175938 154176065 -88488288 + AluJ SINE Alu 2 127 -185 829 293 34 69 chr1 154176505 154176884 -88487469 + MLT1J LTR MaLR 1 366 -145 230 71 0 24 chr1 154176913 154176955 -88487398 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 263 289 24 0 chr1 154176959 154177042 -88487311 + MLT1J LTR MaLR 427 511 0 380 244 6 125 chr1 154177222 154177390 -88486963 - MIR3 SINE MIR -11 197 50 227 293 40 0 chr1 154177521 154177596 -88486757 - MARNA DNA Mariner -369 217 140 543 228 55 0 chr1 154178991 154179118 -88485235 - L1ME1 LINE L1 -23 6143 6010 2056 134 10 13 chr1 154179134 154179447 -88484906 - AluSx SINE Alu 0 312 1 268 0 50 25 chr1 154179459 154179499 -88484854 - L1MB7 LINE L1 -1 6183 6143 869 207 17 11 chr1 154179538 154179712 -88484641 + AluJ SINE Alu 109 283 -29 3828 178 14 24 chr1 154179720 154180463 -88483890 - L1MB7 LINE L1 -27 6157 5423 232 330 75 0 chr1 154180700 154180794 -88483559 - L2 LINE L2 -35 3237 3137 1914 222 123 14 chr1 154181888 154182375 -88481978 - MLT1F LTR MaLR 0 542 3 2078 121 0 3 chr1 154185062 154185351 -88479002 + AluSq SINE Alu 6 293 -20 1279 180 4 24 chr1 154185440 154185695 -88478658 - AluJo SINE Alu -19 293 44 226 182 36 18 chr1 154185738 154185793 -88478560 - L2 LINE L2 -1128 2186 2131 847 212 62 6 chr1 154186056 154186235 -88478118 + MER5A DNA MER1_type 1 189 0 975 228 45 20 chr1 154186239 154186485 -88477868 + MIR SINE MIR 11 262 0 21 0 0 0 chr1 154186856 154186877 -88477476 + AT_rich Low_complexity Low_complexity 1 21 0 293 187 0 55 chr1 154189680 154189771 -88474582 + T-rich Low_complexity Low_complexity 1 86 0 547 334 137 22 chr1 154190058 154190438 -88473915 + L2 LINE L2 1923 2258 -1056 2045 182 5 16 chr1 154190438 154190807 -88473546 - MLT1A1 LTR MaLR 0 365 1 547 334 137 22 chr1 154190807 154191054 -88473299 + L2 LINE L2 2258 2622 -692 274 250 22 22 chr1 154191123 154191215 -88473138 + MIR SINE MIR 170 261 -1 730 216 138 22 chr1 154191223 154191454 -88472899 + MIR SINE MIR 5 262 0 378 157 7 214 chr1 154191676 154191816 -88472537 + MER81 DNA DNA 3 113 -1 255 346 91 19 chr1 154192339 154192689 -88471664 + L2 LINE L2 2686 3059 -213 333 264 42 27 chr1 154193668 154193818 -88470535 - MIR SINE MIR -54 154 4 616 269 12 6 chr1 154195463 154195634 -88468719 + MER5B DNA MER1_type 1 172 -6 256 222 14 56 chr1 154195647 154195719 -88468634 - MIR SINE MIR -63 145 77 2238 118 0 0 chr1 154196073 154196369 -88467984 - AluSx SINE Alu -16 296 1 697 215 34 34 chr1 154196782 154196959 -88467394 - MER5B DNA MER1_type -1 177 1 515 264 11 50 chr1 154197204 154197386 -88466967 + MER5B DNA MER1_type 1 175 -3 223 143 0 0 chr1 154197545 154197580 -88466773 - MIR SINE MIR -8 254 220 309 100 0 20 chr1 154197655 154197705 -88466648 - LTR33 LTR ERVL 0 521 473 353 245 88 10 chr1 154197900 154198002 -88466351 - L2 LINE L2 -1 3312 3203 183 129 0 0 chr1 154198153 154198184 -88466169 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 122 0 0 chr1 154199653 154199694 -88464659 + (A)n Simple_repeat Simple_repeat 1 41 0 183 328 0 0 chr1 154199949 154200013 -88464340 - L3 LINE CR1 -161 1416 1353 594 250 47 12 chr1 154200174 154200346 -88464007 + MIR3 SINE MIR 30 207 -1 224 275 38 69 chr1 154201148 154201214 -88463139 + MIR SINE MIR 25 87 -175 2378 111 91 8 chr1 154201214 154201364 -88462989 + MSTA LTR MaLR 1 137 -291 2044 108 0 11 chr1 154201364 154201633 -88462720 - AluSc SINE Alu -17 292 27 2378 111 91 8 chr1 154201633 154201877 -88462476 + MSTA LTR MaLR 137 428 0 224 275 38 69 chr1 154201877 154201941 -88462412 + MIR SINE MIR 87 151 -111 2009 165 18 55 chr1 154202122 154202521 -88461832 - MLT1B LTR MaLR -4 386 3 742 160 17 22 chr1 154203268 154203449 -88460904 + CT-rich Low_complexity Low_complexity 1 180 0 739 189 0 12 chr1 154203469 154203638 -88460715 + CT-rich Low_complexity Low_complexity 4 170 0 1762 134 32 45 chr1 154203653 154203967 -88460386 - AluSx SINE Alu -2 310 1 2940 58 8 0 chr1 154204443 154204829 -88459524 + L1PA7 LINE L1 5777 6165 0 277 86 35 0 chr1 154204946 154205004 -88459349 + (TA)n Simple_repeat Simple_repeat 2 61 0 466 274 32 0 chr1 154205325 154205449 -88458904 - L2 LINE L2 0 3272 3145 891 199 44 0 chr1 154205560 154205741 -88458612 + MER5A DNA MER1_type 1 189 0 2625 206 115 128 chr1 154205841 154205973 -88458380 + L1MC3 LINE L1 6479 6611 -1174 2475 83 0 0 chr1 154205973 154206273 -88458080 + AluSc SINE Alu 1 300 -9 2625 206 115 128 chr1 154206273 154206630 -88457723 + L1MC3 LINE L1 6611 6971 -814 3558 92 80 40 chr1 154206630 154207207 -88457146 - L1PB2 LINE L1 -5 6146 5547 2625 206 115 128 chr1 154207207 154207296 -88457057 + L1MC3 LINE L1 6971 7060 -725 368 40 20 0 chr1 154207296 154207346 -88457007 + (TA)n Simple_repeat Simple_repeat 1 51 0 2625 206 115 128 chr1 154207346 154207452 -88456901 + L1MC3 LINE L1 7060 7166 -619 454 250 0 0 chr1 154207452 154207536 -88456817 + MLT1F1 LTR MaLR 40 123 -444 2625 206 115 128 chr1 154207536 154208090 -88456263 + L1MC3 LINE L1 7166 7785 0 2558 190 66 0 chr1 154208123 154208591 -88455762 + LTR53 LTR ERVL 21 519 0 209 234 43 0 chr1 154208920 154208967 -88455386 + L2 LINE L2 3249 3297 -16 241 286 59 25 chr1 154209069 154209188 -88455165 + MIR SINE MIR 24 146 -62 499 261 82 20 chr1 154209579 154209795 -88454558 + MIR SINE MIR 25 256 -6 1706 233 82 43 chr1 154210142 154211133 -88453220 + L2 LINE L2 2291 3301 -12 538 73 0 0 chr1 154211946 154212014 -88452339 - Alu SINE Alu -249 69 2 314 294 81 62 chr1 154212422 154212582 -88451771 - MIR SINE MIR -80 182 20 465 281 62 6 chr1 154212620 154212780 -88451573 + MIR SINE MIR 48 216 -46 2223 114 0 23 chr1 154212957 154213265 -88451088 - AluSg SINE Alu -9 301 1 1797 138 6 66 chr1 154214029 154214347 -88450006 - AluSx SINE Alu -13 299 1 539 258 58 11 chr1 154214685 154214875 -88449478 + L2 LINE L2 3105 3303 -10 351 0 0 0 chr1 154215444 154215483 -88448870 + (TG)n Simple_repeat Simple_repeat 2 40 0 332 219 47 0 chr1 154215739 154215803 -88448550 + MER81 DNA DNA 1 67 -47 289 336 0 10 chr1 154215999 154216103 -88448250 + MIR3 SINE MIR 84 186 -22 215 238 0 0 chr1 154216988 154217030 -88447323 + CT-rich Low_complexity Low_complexity 2 43 0 255 61 0 0 chr1 154217153 154217186 -88447167 + (CA)n Simple_repeat Simple_repeat 2 34 0 290 313 76 23 chr1 154218120 154218251 -88446102 - MIR SINE MIR -12 250 113 265 266 43 0 chr1 154219822 154219916 -88444437 + MER69 DNA AcHobo 2429 2526 0 2118 141 0 7 chr1 154219955 154220261 -88444092 - AluSx SINE Alu -8 304 1 266 217 0 60 chr1 154220467 154220550 -88443803 - MER116 DNA Mariner -2 78 1 532 224 21 21 chr1 154220555 154220698 -88443655 + MIR SINE MIR 118 260 -2 271 267 147 13 chr1 154220888 154221079 -88443274 - MIR SINE MIR 0 262 5 193 246 0 18 chr1 154221123 154221180 -88443173 - L3 LINE CR1 -617 960 905 320 203 29 80 chr1 154221455 154221593 -88442760 - HAL1 LINE L1 -128 2379 2249 21 0 0 0 chr1 154221651 154221672 -88442681 + AT_rich Low_complexity Low_complexity 1 21 0 268 232 196 77 chr1 154221672 154221840 -88442513 - HAL1b LINE L1 -415 933 746 227 172 69 58 chr1 154221857 154221944 -88442409 - HAL1 LINE L1 -324 2183 2096 1052 289 147 27 chr1 154222256 154223260 -88441093 - HAL1 LINE L1 -593 1914 790 1038 316 78 20 chr1 154223493 154224217 -88440136 - L2 LINE L2 -222 3050 2271 256 257 101 37 chr1 154224538 154224647 -88439706 + L2 LINE L2 3148 3263 -9 282 342 145 16 chr1 154224953 154225087 -88439266 - MIR SINE MIR -11 251 83 2109 115 91 21 chr1 154225087 154225427 -88438926 + THE1B LTR MaLR 1 364 0 282 342 145 16 chr1 154225427 154225485 -88438868 - MIR SINE MIR -179 83 34 3361 200 41 36 chr1 154225804 154226605 -88437748 - L1MA9 LINE L1 -39 6273 5469 315 255 55 14 chr1 154226808 154226953 -88437400 - L1ME4a LINE L1 0 6121 5971 180 325 24 0 chr1 154227163 154227246 -88437107 - L3b LINE CR1 -196 1387 1303 189 267 17 17 chr1 154227534 154227594 -88436759 - MIR SINE MIR -112 96 37 197 310 48 41 chr1 154228637 154228782 -88435571 - MIR SINE MIR -71 191 46 255 170 0 0 chr1 154228816 154228863 -88435490 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 255 212 0 45 chr1 154229008 154229074 -88435279 - L2 LINE L2 -9 3304 3242 373 280 72 39 chr1 154229171 154229378 -88434975 - L2 LINE L2 0 3313 3100 225 65 0 0 chr1 154229752 154229783 -88434570 + (GA)n Simple_repeat Simple_repeat 2 32 0 669 146 10 181 chr1 154230135 154230340 -88434013 + FRAM SINE Alu 1 169 -7 312 290 49 38 chr1 154231285 154231468 -88432885 - MER5A DNA MER1_type -2 187 3 252 345 48 0 chr1 154233037 154233121 -88431232 + L2 LINE L2 3201 3288 -25 205 337 40 20 chr1 154233089 154233190 -88431163 - L2 LINE L2 -3 3310 3208 * 610 265 29 6 chr1 154233621 154233791 -88430562 + MER5B DNA MER1_type 1 174 -4 224 289 0 48 chr1 154234229 154234312 -88430041 - L2 LINE L2 0 3313 3235 429 350 87 38 chr1 154234755 154235147 -88429206 + L2 LINE L2 2897 3307 -6 191 259 19 0 chr1 154235297 154235351 -88429002 + MIR SINE MIR 37 91 -117 30 27 0 0 chr1 154235516 154235553 -88428800 + AT_rich Low_complexity Low_complexity 1 37 0 181 111 0 0 chr1 154236277 154236304 -88428049 - L2 LINE L2 -15 3298 3272 2602 154 14 5 chr1 154236621 154237042 -88427311 - MSTB LTR MaLR -1 425 1 321 320 30 0 chr1 154237759 154237859 -88426494 - MIR3 SINE MIR -21 187 85 494 259 206 5 chr1 154237913 154238102 -88426251 - MIR SINE MIR -11 251 25 489 304 65 15 chr1 154238196 154238456 -88425897 + L3 LINE CR1 605 877 -700 747 311 59 49 chr1 154238989 154239481 -88424872 + L3 LINE CR1 1057 1553 -24 246 220 0 0 chr1 154240127 154240186 -88424167 + (CGG)n Simple_repeat Simple_repeat 3 61 0 280 271 47 24 chr1 154241641 154241726 -88422627 - L2 LINE L2 -17 3255 3169 266 322 61 9 chr1 154242211 154242326 -88422027 - MIR3 SINE MIR -6 202 82 554 266 45 0 chr1 154242438 154242592 -88421761 + MIR SINE MIR 48 208 -54 803 236 9 45 chr1 154243695 154243915 -88420438 - MIR SINE MIR -28 234 23 1590 144 0 0 chr1 154244742 154244978 -88419375 + MER46A DNA MER2_type 1 236 0 512 266 25 49 chr1 154244978 154245181 -88419172 - MIR SINE MIR -64 198 1 201 291 0 18 chr1 154245135 154245190 -88419163 + MIR SINE MIR 41 94 -114 * 320 301 0 0 chr1 154245997 154246080 -88418273 + C-rich Low_complexity Low_complexity 1 83 0 211 151 321 0 chr1 154246616 154246669 -88417684 - MIR SINE MIR -57 151 82 208 239 0 0 chr1 154246795 154246841 -88417512 - L2 LINE L2 -10 3303 3258 * 209 234 91 0 chr1 154246835 154246912 -88417441 + MIR SINE MIR 114 197 -65 1489 156 0 4 chr1 154246913 154247150 -88417203 - MER46A DNA MER2_type 0 236 1 242 358 21 0 chr1 154247292 154247387 -88416966 - MIR SINE MIR -63 145 49 237 224 92 41 chr1 154249119 154249217 -88415136 + MIR3 SINE MIR 93 195 -13 632 222 12 43 chr1 154249353 154249515 -88414838 + MER58B DNA MER1_type 184 340 -1 708 311 0 28 chr1 154249827 154250081 -88414272 + MIR SINE MIR 8 254 -8 1149 177 35 17 chr1 154250087 154250319 -88414034 - MER46A DNA MER2_type 0 236 1 275 258 0 0 chr1 154250319 154250381 -88413972 + MIR SINE MIR 201 262 0 312 27 0 0 chr1 154251026 154251063 -88413290 + (CA)n Simple_repeat Simple_repeat 2 38 0 396 276 77 0 chr1 154251205 154251365 -88412988 - MIR SINE MIR -63 145 11 212 263 118 13 chr1 154251638 154251714 -88412639 - MIR3 SINE MIR -11 197 114 822 228 59 109 chr1 154252022 154252443 -88411910 - MSTC LTR MaLR -28 400 1 22 35 0 0 chr1 154252967 154252996 -88411357 + AT_rich Low_complexity Low_complexity 1 29 0 312 246 138 36 chr1 154253288 154253483 -88410870 + MER113 DNA MER1_type? 4 218 -303 284 337 0 0 chr1 154254357 154254449 -88409904 - L2 LINE L2 -189 3083 2992 213 193 244 34 chr1 154254511 154254630 -88409723 + MIR SINE MIR 117 260 -2 385 197 0 0 chr1 154254995 154255071 -88409282 + L2 LINE L2 3236 3311 -2 226 132 240 124 chr1 154255790 154255911 -88408442 + L2 LINE L2 3138 3272 0 2164 97 0 28 chr1 154257594 154257933 -88406420 + AluY SINE Alu 1 331 0 1665 235 65 33 chr1 154258151 154258640 -88405713 + MLT2B1 LTR ERVL 14 518 -2 336 343 22 7 chr1 154259225 154259362 -88404991 - MIR3 SINE MIR -46 162 24 345 319 23 60 chr1 154259847 154260063 -88404290 - L2 LINE L2 -3 3310 3103 244 237 172 21 chr1 154261019 154261112 -88403241 - L2 LINE L2 -5 3267 3161 230 154 0 0 chr1 154261448 154261487 -88402866 - MIR3 SINE MIR -17 191 153 255 223 175 60 chr1 154262720 154262886 -88401467 + L2 LINE L2 2873 3057 -215 215 226 161 21 chr1 154263006 154263099 -88401254 + MIR SINE MIR 92 197 -65 369 205 46 99 chr1 154263441 154263504 -88400849 + MER5B DNA MER1_type 1 66 -112 2022 137 23 7 chr1 154263504 154263810 -88400543 + AluSx SINE Alu 1 311 -1 369 205 46 99 chr1 154263810 154263897 -88400456 + MER5B DNA MER1_type 66 143 -35 21 0 0 0 chr1 154264039 154264060 -88400293 + AT_rich Low_complexity Low_complexity 1 21 0 271 271 108 23 chr1 154264741 154264870 -88399483 + L2 LINE L2 3133 3272 0 275 171 0 0 chr1 154265762 154265803 -88398550 + Alu SINE Alu 2 42 -266 982 140 0 0 chr1 154265803 154265939 -88398414 + AluJb SINE Alu 159 294 -18 290 226 81 16 chr1 154265969 154266093 -88398260 - L1ME4a LINE L1 -11 6110 5979 2219 119 0 25 chr1 154267195 154267515 -88396838 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 154267753 154267777 -88396576 + AT_rich Low_complexity Low_complexity 1 24 0 334 265 85 32 chr1 154269306 154269495 -88394858 - MIR3 SINE MIR -9 199 1 1505 275 137 13 chr1 154269527 154270409 -88393944 + L2 LINE L2 2315 3309 -4 189 233 0 0 chr1 154270470 154270513 -88393840 - L2 LINE L2 0 3313 3271 183 380 28 35 chr1 154271461 154271603 -88392750 - MIR3 SINE MIR -17 191 51 308 269 0 19 chr1 154271897 154272001 -88392352 + MIR SINE MIR 160 261 -1 208 301 0 41 chr1 154272539 154272612 -88391741 + GA-rich Low_complexity Low_complexity 4 73 0 248 315 24 16 chr1 154272889 154273016 -88391337 + CT-rich Low_complexity Low_complexity 5 132 0 192 246 16 0 chr1 154274115 154274176 -88390177 - MIR SINE MIR -109 153 92 195 321 69 11 chr1 154275455 154275592 -88388761 + MIR SINE MIR 38 181 -81 278 50 25 0 chr1 154275803 154275843 -88388510 + (TG)n Simple_repeat Simple_repeat 2 42 0 234 346 55 24 chr1 154276824 154276951 -88387402 + L2 LINE L2 3134 3264 -8 1891 247 53 45 chr1 154277315 154277988 -88386365 - L2 LINE L2 -706 2608 1930 193 229 0 0 chr1 154278095 154278130 -88386223 + L2 LINE L2 3224 3258 -14 218 167 139 42 chr1 154278576 154278648 -88385705 - MIR SINE MIR -12 250 172 317 260 0 70 chr1 154278656 154278756 -88385597 + L2 LINE L2 3188 3280 -33 352 308 23 15 chr1 154278805 154278935 -88385418 - MIR SINE MIR -109 153 23 186 286 110 32 chr1 154278984 154279138 -88385215 + MIR3 SINE MIR 17 182 -26 700 283 124 40 chr1 154279548 154279944 -88384409 - MLT1J2 LTR MaLR 0 450 22 34 0 0 0 chr1 154280251 154280285 -88384068 + AT_rich Low_complexity Low_complexity 1 34 0 2244 112 7 0 chr1 154280285 154280588 -88383765 + AluSp SINE Alu 9 313 0 316 296 59 12 chr1 154280724 154280893 -88383460 - L1ME4a LINE L1 -217 5904 5728 259 263 13 0 chr1 154282262 154282418 -88381935 + (TG)n Simple_repeat Simple_repeat 1 158 0 252 293 4 12 chr1 154282435 154282684 -88381669 + (TG)n Simple_repeat Simple_repeat 1 246 0 301 271 9 9 chr1 154282722 154282829 -88381524 + (TG)n Simple_repeat Simple_repeat 1 107 0 187 359 0 0 chr1 154282839 154282903 -88381450 + L2 LINE L2 3141 3204 -68 2273 101 0 3 chr1 154282950 154283246 -88381107 + AluSq SINE Alu 1 295 -18 615 243 0 0 chr1 154283301 154283412 -88380941 + FLAM_A SINE Alu 13 123 -19 226 191 128 0 chr1 154284977 154285024 -88379329 + L2 LINE L2 3150 3202 -70 482 188 43 72 chr1 154285044 154285182 -88379171 - MER91B DNA MER1_type -56 134 1 183 259 25 74 chr1 154285182 154285257 -88379096 + L2 LINE L2 3193 3263 -9 2061 141 7 0 chr1 154285701 154285999 -88378354 - AluSx SINE Alu -12 300 1 399 301 39 39 chr1 154286547 154286703 -88377650 + MIR SINE MIR 16 171 -91 351 227 340 10 chr1 154286723 154286917 -88377436 + MIR SINE MIR 5 262 0 628 296 49 45 chr1 154287229 154287476 -88376877 + MIR SINE MIR 15 262 0 2259 99 27 0 chr1 154287887 154288180 -88376173 + AluSq SINE Alu 1 301 -12 808 170 111 0 chr1 154288212 154288383 -88375970 + MER20 DNA MER1_type 30 219 0 439 324 73 61 chr1 154289812 154290220 -88374133 + L2 LINE L2 2852 3264 -8 261 228 114 65 chr1 154290588 154290711 -88373642 - MIR SINE MIR -117 145 17 1466 114 5 0 chr1 154290742 154290935 -88373418 - AluSg/x SINE Alu -17 295 102 269 242 105 57 chr1 154290956 154291080 -88373273 - MIR SINE MIR -116 146 17 1209 94 44 0 chr1 154291112 154291271 -88373082 - AluSg/x SINE Alu -10 302 137 234 271 14 0 chr1 154291460 154291530 -88372823 + MARNA DNA Mariner 164 234 -352 464 278 14 0 chr1 154291640 154291784 -88372569 + MARNA DNA Mariner 261 406 -180 450 276 179 6 chr1 154292929 154293085 -88371268 + MIR3 SINE MIR 2 184 -24 24 0 0 0 chr1 154293245 154293269 -88371084 + AT_rich Low_complexity Low_complexity 1 24 0 1402 139 0 29 chr1 154293320 154293528 -88370825 + AluJb SINE Alu 87 288 -24 379 298 19 58 chr1 154293728 154293936 -88370417 - L1ME3A LINE L1 -176 5994 5795 380 320 63 42 chr1 154293976 154294310 -88370043 - L1ME3A LINE L1 -473 5697 5357 1412 177 70 20 chr1 154294386 154294686 -88369667 + MLT1A1 LTR MaLR 1 315 -50 241 299 26 26 chr1 154294736 154294853 -88369500 - L1ME3A LINE L1 -976 5170 5054 350 264 87 76 chr1 154295349 154295529 -88368824 - MIR SINE MIR -15 193 14 180 259 37 0 chr1 154295677 154295731 -88368622 - MIR SINE MIR -86 122 67 612 313 110 29 chr1 154295819 154296129 -88368224 - MLT1K LTR MaLR -24 564 230 243 296 52 17 chr1 154296167 154296282 -88368071 - MLT1K LTR MaLR -455 133 15 678 321 22 18 chr1 154296391 154296615 -88367738 - MIR SINE MIR -36 226 2 225 0 0 0 chr1 154297771 154297796 -88366557 + (CA)n Simple_repeat Simple_repeat 2 26 0 318 232 77 77 chr1 154298655 154298810 -88365543 + L1ME4a LINE L1 5945 6099 -22 542 267 5 81 chr1 154298828 154299038 -88365315 + L2 LINE L2 3120 3313 0 800 193 123 61 chr1 154299203 154299529 -88364824 - MLT1D LTR MaLR -159 346 1 2648 178 41 6 chr1 154299685 154300219 -88364134 + L1MB4 LINE L1 5628 6180 0 628 350 56 19 chr1 154300354 154300728 -88363625 + LTR16A LTR ERVL 57 444 -6 196 407 22 22 chr1 154300770 154300952 -88363401 - L2 LINE L2 -575 2739 2558 497 329 24 6 chr1 154301793 154301963 -88362390 + MER5B DNA MER1_type 3 175 -3 239 262 233 0 chr1 154301963 154302060 -88362293 - MIR3 SINE MIR -58 150 30 277 230 230 0 chr1 154302457 154302531 -88361822 + MIR SINE MIR 112 202 -60 560 250 140 41 chr1 154302563 154302927 -88361426 - MLT1I LTR MaLR -5 404 5 712 290 44 41 chr1 154303632 154303949 -88360404 - L2 LINE L2 -17 3296 2979 423 56 0 0 chr1 154303974 154304028 -88360325 + (TG)n Simple_repeat Simple_repeat 2 55 0 229 284 223 7 chr1 154304131 154304279 -88360074 - L2 LINE L2 -353 2961 2782 192 353 15 0 chr1 154305269 154305337 -88359016 + MIR SINE MIR 71 139 -69 481 313 115 5 chr1 154305924 154306132 -88358221 - MIR SINE MIR -3 259 29 418 210 92 8 chr1 154306388 154306507 -88357846 + L1ME4a LINE L1 5991 6119 -2 2019 137 0 3 chr1 154306598 154306890 -88357463 + AluSx SINE Alu 1 291 -21 7690 31 0 0 chr1 154306896 154307920 -88356433 + L1PA4 LINE L1 5132 6155 0 486 263 29 0 chr1 154308069 154308206 -88356147 + L2 LINE L2 3167 3307 -6 200 167 0 42 chr1 154308492 154308540 -88355813 + GA-rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr1 154309173 154309203 -88355150 + GC_rich Low_complexity Low_complexity 1 30 0 465 59 15 0 chr1 154310144 154310212 -88354141 - MER41B LTR ERV1 -90 545 477 614 196 33 46 chr1 154312920 154313073 -88351280 + MIR SINE MIR 110 260 -2 783 300 108 10 chr1 154313781 154314171 -88350182 - L2 LINE L2 0 3313 2886 351 0 0 0 chr1 154314456 154314495 -88349858 + (TG)n Simple_repeat Simple_repeat 1 39 0 3006 132 0 7 chr1 154314782 154315213 -88349140 - MSTA LTR MaLR 0 428 1 952 212 325 42 chr1 154316819 154317437 -88346916 - LTR50 LTR ERVL -2 793 1 1375 194 71 21 chr1 154318063 154318388 -88345965 - MER58B DNA MER1_type 0 341 1 1819 168 3 3 chr1 154318429 154318715 -88345638 + AluJo SINE Alu 6 291 -21 198 225 84 70 chr1 154320093 154320164 -88344189 + MIR3 SINE MIR 128 199 -9 211 123 228 18 chr1 154321460 154321517 -88342836 - L2 LINE L2 0 3313 3245 24 0 0 0 chr1 154322239 154322263 -88342090 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 154322318 154322340 -88342013 + AT_rich Low_complexity Low_complexity 1 22 0 662 312 73 12 chr1 154323194 154323441 -88340912 - MIR SINE MIR 0 262 1 442 292 41 58 chr1 154323661 154323867 -88340486 - MIR SINE MIR -49 213 10 240 373 60 33 chr1 154324000 154324150 -88340203 - L2 LINE L2 -11 3261 3108 419 297 145 46 chr1 154325137 154325296 -88339057 + L3 LINE CR1 805 947 -630 2278 74 51 3 chr1 154325296 154325592 -88338761 + AluY SINE Alu 1 310 -1 419 297 145 46 chr1 154325592 154325873 -88338480 + L3 LINE CR1 947 1371 -206 206 250 0 0 chr1 154325880 154325920 -88338433 + L3 LINE CR1 1521 1560 -17 368 303 105 0 chr1 154326454 154326606 -88337747 - MIR3 SINE MIR -11 197 30 249 335 32 52 chr1 154327147 154327302 -88337051 + MIR SINE MIR 68 219 -43 402 254 135 8 chr1 154327695 154327821 -88336532 + MIR SINE MIR 121 262 0 226 0 59 0 chr1 154330576 154330610 -88333743 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 28 0 0 0 chr1 154334489 154334517 -88329836 + AT_rich Low_complexity Low_complexity 1 28 0 253 349 73 0 chr1 154334816 154334925 -88329428 - L2 LINE L2 -5 3267 3151 216 0 0 0 chr1 154335138 154335162 -88329191 + (T)n Simple_repeat Simple_repeat 1 24 0 807 182 0 8 chr1 154339457 154339589 -88324764 - FLAM_C SINE Alu -2 131 1 342 0 0 0 chr1 154341902 154341940 -88322413 + (TTA)n Simple_repeat Simple_repeat 2 39 0 733 274 75 13 chr1 154341991 154342217 -88322136 + MIR SINE MIR 2 241 -21 507 219 52 83 chr1 154342265 154342487 -88321866 - MIR SINE MIR -55 207 4 187 148 19 111 chr1 154343461 154343515 -88320838 - L2 LINE L2 0 3272 3224 274 266 172 30 chr1 154343697 154343724 -88320629 + L2 LINE L2 3121 3143 -170 198 0 0 0 chr1 154343724 154343746 -88320607 + (TA)n Simple_repeat Simple_repeat 2 23 0 274 266 172 30 chr1 154343746 154343887 -88320466 + L2 LINE L2 3143 3313 0 289 298 30 23 chr1 154343917 154344048 -88320305 - L2 LINE L2 -225 3047 2916 385 314 143 50 chr1 154344176 154344908 -88319445 - L2 LINE L2 -528 2786 1987 1688 137 61 22 chr1 154344939 154345216 -88319137 + AluJo SINE Alu 1 288 -24 336 209 9 23 chr1 154345502 154345720 -88318633 + C-rich Low_complexity Low_complexity 1 214 0 21 0 0 0 chr1 154345947 154345968 -88318385 + AT_rich Low_complexity Low_complexity 1 21 0 2136 212 8 3 chr1 154346299 154346790 -88317563 - MER89 LTR ERV1 0 559 3 957 163 0 0 chr1 154346823 154346976 -88317377 - AluSc SINE Alu 0 309 157 264 159 0 0 chr1 154346976 154347020 -88317333 + Alu SINE Alu 249 292 -10 373 275 53 24 chr1 154347064 154347233 -88317120 + ERVL LTR ERVL 3537 3672 -1982 499 290 45 34 chr1 154347262 154347438 -88316915 + ERVL LTR ERVL 3777 3954 -1810 862 261 110 14 chr1 154347476 154347824 -88316529 + ERVL LTR ERVL 3988 4371 -1283 1320 334 21 17 chr1 154348132 154348710 -88315643 + ERVL LTR ERVL 4761 5340 -424 2591 208 49 82 chr1 154349123 154349892 -88314461 + MER21B LTR ERV1 13 756 -107 315 286 195 27 chr1 154350092 154350277 -88314076 + LTR33 LTR ERVL 304 519 -2 2676 211 82 2 chr1 154350377 154350899 -88313454 + MLT1F1 LTR MaLR 1 564 -3 599 246 86 40 chr1 154350927 154351102 -88313251 - MIR SINE MIR 0 262 80 3091 231 53 1 chr1 154351110 154351789 -88312564 + HsTC2c DNA Tc2 15 728 -1 296 338 0 0 chr1 154351790 154351858 -88312495 - MIR SINE MIR -186 76 9 793 126 0 0 chr1 154351965 154352084 -88312269 + L1MB2 LINE L1 6051 6169 -2 23 54 0 0 chr1 154352084 154352121 -88312232 + AT_rich Low_complexity Low_complexity 1 37 0 1626 191 7 11 chr1 154352121 154352404 -88311949 + AluJb SINE Alu 1 282 -30 233 75 25 0 chr1 154352407 154352447 -88311906 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 497 165 78 0 chr1 154352558 154352661 -88311692 + L1ME2 LINE L1 6044 6154 -10 1550 178 4 32 chr1 154352671 154352980 -88311373 - AluJb SINE Alu 0 309 9 236 326 0 21 chr1 154353071 154353166 -88311187 - L3 LINE CR1 -805 772 680 277 307 109 10 chr1 154353166 154353267 -88311086 - L3 LINE CR1 -1147 430 320 248 306 256 6 chr1 154354302 154354462 -88309891 - L2 LINE L2 0 3313 3114 263 211 11 0 chr1 154354624 154354714 -88309639 + GA-rich Low_complexity Low_complexity 1 91 0 316 245 161 42 chr1 154355773 154355965 -88308388 - L1ME4a LINE L1 -5 6116 5902 1415 260 117 40 chr1 154356259 154356805 -88307548 + MLT2E LTR ERVL 36 623 -5 466 333 47 5 chr1 154357221 154357413 -88306940 + ERVL LTR ERVL 464 663 -5101 941 296 58 14 chr1 154357439 154357800 -88306553 + ERVL LTR ERVL 764 1140 -4624 27 0 0 0 chr1 154357867 154357894 -88306459 + AT_rich Low_complexity Low_complexity 1 27 0 436 257 115 40 chr1 154357924 154358150 -88306203 - L1M4 LINE L1 -3375 2771 2529 2961 260 116 27 chr1 154358203 154358826 -88305527 + L1ME LINE L1 3357 3923 -2223 2028 133 0 11 chr1 154358826 154359134 -88305219 - AluSg SINE Alu 0 305 1 2961 260 116 27 chr1 154359134 154359744 -88304609 + L1ME LINE L1 3923 4743 -1403 195 42 0 0 chr1 154359744 154359768 -88304585 + (GA)n Simple_repeat Simple_repeat 2 25 0 2961 260 116 27 chr1 154359768 154359992 -88304361 + L1ME LINE L1 4743 4946 -1200 355 325 53 0 chr1 154360236 154360387 -88303966 - MLT1I LTR MaLR -238 171 13 833 265 136 28 chr1 154360414 154360923 -88303430 - HAL1 LINE L1 -856 1651 1088 369 280 63 28 chr1 154360928 154361071 -88303282 - MLT1L LTR MaLR 0 615 468 937 286 80 19 chr1 154361123 154361481 -88302872 - MLT1L LTR MaLR -229 386 12 395 263 135 42 chr1 154361498 154361787 -88302566 - HAL1 LINE L1 -1420 1087 772 685 319 29 22 chr1 154362044 154362418 -88301935 + MER115 DNA AcHobo 31 455 -238 426 286 149 0 chr1 154362575 154362736 -88301617 - MER5A DNA MER1_type -3 186 2 180 77 0 0 chr1 154362795 154362821 -88301532 + (TC)n Simple_repeat Simple_repeat 1 26 0 274 283 50 0 chr1 154362849 154362948 -88301405 - HAL1 LINE L1 -2382 125 22 182 286 9 86 chr1 154363156 154363261 -88301092 + MIR SINE MIR 116 212 -50 270 307 45 11 chr1 154363392 154363480 -88300873 + MIR SINE MIR 20 110 -152 420 306 95 43 chr1 154363515 154363862 -88300491 + L1ME LINE L1 5267 5631 -490 4057 167 103 26 chr1 154364462 154365258 -88299095 - MER21B LTR ERV1 -1 862 6 285 377 89 5 chr1 154365763 154365954 -88298399 - MIR SINE MIR -37 225 19 2066 196 16 3 chr1 154366497 154366880 -88297473 - MLT1B LTR MaLR 0 390 3 349 278 10 21 chr1 154367133 154367230 -88297123 + MER94 DNA DNA 39 134 0 268 291 17 2 chr1 154367563 154367641 -88296712 + MER20 DNA MER1_type 9 75 -144 388 289 88 46 chr1 154367875 154368069 -88296284 + MIR SINE MIR 11 212 -50 297 289 232 24 chr1 154370422 154370907 -88293446 - L2 LINE L2 -252 3061 2474 192 111 0 0 chr1 154371474 154371510 -88292843 + (TA)n Simple_repeat Simple_repeat 1 36 0 935 295 39 44 chr1 154372212 154372619 -88291734 - MLT1I LTR MaLR -4 405 1 330 26 0 0 chr1 154373535 154373574 -88290779 + (TG)n Simple_repeat Simple_repeat 1 39 0 326 347 111 5 chr1 154374492 154374691 -88289662 - MIR SINE MIR -41 221 2 249 33 0 0 chr1 154375547 154375577 -88288776 + (TG)n Simple_repeat Simple_repeat 2 31 0 2233 105 3 0 chr1 154375936 154376232 -88288121 + AluSp SINE Alu 1 297 -16 1238 247 48 37 chr1 154377403 154377836 -88286517 + MLT1J1 LTR MaLR 9 446 0 320 376 82 42 chr1 154378487 154378817 -88285536 + L2 LINE L2 2930 3272 0 929 252 41 32 chr1 154379953 154380199 -88284154 - MIR SINE MIR 0 262 15 398 228 0 0 chr1 154380952 154381031 -88283322 + MER116 DNA Mariner 2 80 0 1236 287 83 7 chr1 154381435 154381846 -88282507 - L2 LINE L2 -1 3312 2871 2199 120 3 0 chr1 154382058 154382367 -88281986 + AluSx SINE Alu 1 310 -2 439 292 56 28 chr1 154383371 154383549 -88280804 + MER5A DNA MER1_type 7 189 0 320 282 120 0 chr1 154384464 154384581 -88279772 + MER112 DNA MER1_type 3 133 -127 190 362 32 90 chr1 154384913 154385101 -88279252 + L2 LINE L2 3000 3176 -96 484 237 188 16 chr1 154385302 154385488 -88278865 + MIR SINE MIR 45 262 0 1082 182 75 69 chr1 154385715 154385789 -88278564 + MER33 DNA MER1_type 1 73 -2512 2280 89 0 0 chr1 154385789 154386081 -88278272 + AluY SINE Alu 8 299 -12 1082 182 75 69 chr1 154386081 154386324 -88278029 + MER33 DNA MER1_type 73 320 -4 2305 92 0 3 chr1 154387337 154387630 -88276723 - AluSp SINE Alu -19 294 3 228 258 32 0 chr1 154388006 154388068 -88276285 + L2 LINE L2 3209 3272 0 700 291 39 9 chr1 154389580 154389810 -88274543 + MIR SINE MIR 8 244 -18 958 214 114 5 chr1 154389965 154390166 -88274187 - MER58A DNA MER1_type 0 224 2 189 0 0 0 chr1 154390597 154390618 -88273735 + (CA)n Simple_repeat Simple_repeat 2 22 0 192 326 73 86 chr1 154390903 154391402 -88272951 + L2 LINE L2 2709 3186 -86 812 237 31 58 chr1 154391635 154391790 -88272563 - MER58A DNA MER1_type -2202 218 69 903 226 69 0 chr1 154391790 154391994 -88272359 - MER20 DNA MER1_type -1 218 1 812 237 31 58 chr1 154391994 154392062 -88272291 - MER58A DNA MER1_type -2351 69 1 840 268 169 71 chr1 154393784 154394470 -88269883 - MER20B DNA MER1_type -30 753 1 1182 201 48 0 chr1 154395973 154396182 -88268171 + MER20 DNA MER1_type 1 219 0 192 77 0 0 chr1 154397836 154397862 -88266491 + (TTA)n Simple_repeat Simple_repeat 3 28 0 503 243 58 40 chr1 154397863 154398036 -88266317 + MER5B DNA MER1_type 1 176 -2 909 225 6 6 chr1 154398143 154398321 -88266032 + MER5B DNA MER1_type 1 178 0 852 229 11 17 chr1 154398329 154398508 -88265845 - MER5B DNA MER1_type 0 178 1 2181 115 51 78 chr1 154398775 154399149 -88265204 + THE1B LTR MaLR 1 364 0 12033 99 25 0 chr1 154399149 154400687 -88263666 + THE1B-int LTR MaLR 1 1576 -4 2178 140 53 34 chr1 154400689 154401046 -88263307 + THE1B LTR MaLR 1 364 0 2856 162 5 0 chr1 154401294 154401720 -88262633 - MSTA LTR MaLR 0 428 1 591 137 0 0 chr1 154402090 154402185 -88262168 - MSTA LTR MaLR -329 99 5 * 628 126 29 0 chr1 154402178 154402281 -88262072 - MSTA LTR MaLR -322 106 1 879 212 88 55 chr1 154402423 154402697 -88261656 - MLT1L LTR MaLR -332 283 1 2131 129 3 0 chr1 154402846 154403141 -88261212 + AluSp SINE Alu 1 296 -17 2588 106 3 3 chr1 154403350 154403707 -88260646 + THE1B LTR MaLR 1 357 -7 9918 109 35 1 chr1 154403713 154405073 -88259280 + THE1B-int LTR MaLR 1 1406 -174 44265 46 2 1 chr1 154405081 154411249 -88253104 + L1PA3 LINE L1 8 6155 0 1518 63 5 0 chr1 154411240 154411431 -88252922 + THE1B-int LTR MaLR 1389 1580 0 * 2715 119 8 0 chr1 154411431 154411792 -88252561 + THE1B LTR MaLR 1 364 0 25 51 0 0 chr1 154411959 154411998 -88252355 + AT_rich Low_complexity Low_complexity 1 39 0 1030 302 18 12 chr1 154412107 154412435 -88251918 + L1M3a LINE L1 1532 1861 -5625 5178 156 28 35 chr1 154412698 154413674 -88250679 + LTR5 LTR ERVK 1 969 0 246 313 25 0 chr1 154413754 154413834 -88250519 + L1M3a LINE L1 1904 1985 -5501 1822 265 24 7 chr1 154413996 154414547 -88249806 + L1M3a LINE L1 1900 2459 -5106 * 7298 182 30 9 chr1 154414544 154416299 -88248054 + L1MA6 LINE L1 1239 3028 -4065 2068 147 3 0 chr1 154416300 154416607 -88247746 + AluSx SINE Alu 1 308 -4 15298 169 35 20 chr1 154416632 154417201 -88247152 + L1MA6 LINE L1 3295 3854 -3865 255 31 0 0 chr1 154417201 154417233 -88247120 + (TA)n Simple_repeat Simple_repeat 2 33 0 15298 169 35 20 chr1 154417233 154418882 -88245471 + L1MA6 LINE L1 3854 5477 -2242 1375 147 60 5 chr1 154418882 154419100 -88245253 + MER30 DNA MER1_type 1 230 0 15298 169 35 20 chr1 154419100 154421225 -88243128 + L1MA6 LINE L1 5477 7719 0 1816 168 26 26 chr1 154421250 154421602 -88242751 + Tigger1 DNA MER2_type 7 358 -2060 11041 134 22 13 chr1 154421606 154423355 -88240998 + Tigger1 DNA MER2_type 495 2258 -160 36620 96 13 18 chr1 154423355 154428549 -88235804 - L1PA6 LINE L1 -14 6140 992 2286 81 3 7 chr1 154428549 154428847 -88235506 - AluY SINE Alu -14 297 1 36620 96 13 18 chr1 154428847 154429822 -88234531 - L1PA6 LINE L1 -5162 992 13 380 193 36 0 chr1 154430255 154430338 -88234015 - HsTC2 DNA Tc2 -1812 86 1 464 271 165 32 chr1 154430355 154430573 -88233780 - MIR SINE MIR -14 248 2 1940 205 89 59 chr1 154430675 154431416 -88232937 + L1MC5 LINE L1 7152 7914 -47 805 206 100 0 chr1 154432060 154432230 -88232123 - MER20 DNA MER1_type 0 219 33 1493 252 91 16 chr1 154432249 154432702 -88231651 - MLT1J LTR MaLR -24 487 1 343 339 131 0 chr1 154433026 154433247 -88231106 - MIR SINE MIR 0 262 13 858 153 0 29 chr1 154433389 154433526 -88230827 - FLAM_C SINE Alu 0 133 1 388 330 87 17 chr1 154433543 154433716 -88230637 + MIR SINE MIR 1 185 -77 435 333 4 2 chr1 154435094 154435498 -88228855 + (CA)n Simple_repeat Simple_repeat 1 404 0 1017 150 0 0 chr1 154436055 154436202 -88228151 + (TTC)n Simple_repeat Simple_repeat 1 327 0 1017 150 0 0 chr1 154436202 154436382 -88227971 + (TTC)n Simple_repeat Simple_repeat 1 180 0 191 265 0 0 chr1 154438587 154438636 -88225717 - MIR SINE MIR -8 254 206 180 214 241 9 chr1 154438852 154438964 -88225389 - L2 LINE L2 -150 3122 2985 40 0 0 0 chr1 154441113 154441153 -88223200 + AT_rich Low_complexity Low_complexity 1 40 0 370 190 0 25 chr1 154441213 154441292 -88223061 - MER103 DNA DNA -47 119 43 216 0 0 0 chr1 154441743 154441767 -88222586 + (CA)n Simple_repeat Simple_repeat 1 24 0 218 298 43 0 chr1 154441880 154441974 -88222379 + L3b LINE CR1 1260 1357 -226 327 314 23 41 chr1 154442114 154442286 -88222067 - MIR3 SINE MIR -6 202 34 197 383 12 48 chr1 154442364 154442531 -88221822 - L2 LINE L2 -221 3051 2891 286 260 14 0 chr1 154443835 154443908 -88220445 + GA-rich Low_complexity Low_complexity 3 76 0 251 307 173 16 chr1 154444407 154444534 -88219819 + MIR3 SINE MIR 4 150 -58 405 264 132 35 chr1 154445213 154445494 -88218859 + MLT1J LTR MaLR 7 322 -124 2188 113 0 13 chr1 154445494 154445795 -88218558 + AluSx SINE Alu 3 299 -13 405 264 132 35 chr1 154445795 154445934 -88218419 + MLT1J LTR MaLR 322 446 0 492 247 128 40 chr1 154446213 154446440 -88217913 + MLT1J LTR MaLR 183 429 -82 734 269 101 35 chr1 154447441 154447757 -88216596 + MLT1J2 LTR MaLR 113 449 -1 322 106 0 0 chr1 154448375 154448422 -88215931 - U5 snRNA snRNA -69 47 1 298 161 113 0 chr1 154448444 154448506 -88215847 + MER112 DNA MER1_type 83 151 -109 1991 146 6 13 chr1 154448749 154449113 -88215240 - AluSq SINE Alu 0 362 1 220 182 0 76 chr1 154449113 154449129 -88215224 + T-rich Low_complexity Low_complexity 1 180 0 200 111 28 0 chr1 154449394 154449430 -88214923 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1056 160 70 0 chr1 154449496 154449709 -88214644 - L1MB3 LINE L1 -4 6179 5952 740 200 0 14 chr1 154450827 154450972 -88213381 + FLAM_C SINE Alu 1 143 0 197 284 68 85 chr1 154450978 154451154 -88213199 + MIR SINE MIR 34 206 -56 2175 132 3 3 chr1 154451167 154451478 -88212875 + AluSx SINE Alu 1 311 -1 333 0 0 0 chr1 154451534 154451571 -88212782 + (CA)n Simple_repeat Simple_repeat 1 37 0 230 330 144 0 chr1 154452308 154452426 -88211927 + L2 LINE L2 3137 3271 -1 441 253 5 26 chr1 154452640 154452797 -88211556 - MER5B DNA MER1_type -21 168 14 203 299 26 26 chr1 154453455 154453532 -88210821 - L2 LINE L2 -3 3269 3193 716 290 30 76 chr1 154453617 154454052 -88210301 + L2 LINE L2 2805 3219 -94 1315 207 41 7 chr1 154454065 154454360 -88209993 + MLT1D LTR MaLR 201 505 0 461 288 76 10 chr1 154454365 154454563 -88209790 - L3 LINE CR1 -218 1359 1149 351 295 23 31 chr1 154454768 154454897 -88209456 + MIR SINE MIR 13 140 -122 235 341 161 22 chr1 154454994 154455107 -88209246 - L3 LINE CR1 -559 1018 922 273 29 0 0 chr1 154455107 154455141 -88209212 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 235 341 161 22 chr1 154455141 154455300 -88209053 - L3 LINE CR1 -655 922 708 327 279 9 61 chr1 154456460 154456683 -88207670 + MIR SINE MIR 8 262 0 183 239 0 0 chr1 154457154 154457200 -88207153 + (TA)n Simple_repeat Simple_repeat 1 46 0 618 189 151 13 chr1 154458635 154458794 -88205559 - MER5A DNA MER1_type 0 189 9 1694 159 16 48 chr1 154459344 154459658 -88204695 + AluJb SINE Alu 1 304 -8 195 380 66 8 chr1 154460081 154460202 -88204151 - L2 LINE L2 0 3272 3145 268 225 11 11 chr1 154460472 154460561 -88203792 + GA-rich Low_complexity Low_complexity 1 89 0 2141 102 3 0 chr1 154461382 154461665 -88202688 + AluSc SINE Alu 1 284 -25 281 239 15 0 chr1 154461695 154461762 -88202591 + CT-rich Low_complexity Low_complexity 2 69 0 280 313 0 12 chr1 154462737 154462820 -88201533 - MIR SINE MIR -85 177 96 651 163 0 0 chr1 154462843 154462966 -88201387 + CT-rich Low_complexity Low_complexity 3 125 0 484 261 230 37 chr1 154462994 154463598 -88200755 - L2 LINE L2 -69 3244 2507 311 275 22 0 chr1 154463841 154463932 -88200421 + MIR3 SINE MIR 106 198 -10 3280 176 15 2 chr1 154464150 154464747 -88199606 + L1MB5 LINE L1 5569 6173 -1 702 158 83 0 chr1 154464772 154464892 -88199461 - MER3 DNA MER1_type -79 130 1 215 240 0 20 chr1 154466083 154466133 -88198220 + CT-rich Low_complexity Low_complexity 4 52 0 2133 125 3 0 chr1 154466164 154466459 -88197894 - AluSx SINE Alu -16 296 1 331 280 32 0 chr1 154467012 154467105 -88197248 - MER103 DNA DNA -7 159 64 600 297 91 18 chr1 154467235 154467521 -88196832 + LTR16A1 LTR ERVL 146 452 -5 210 204 0 0 chr1 154467571 154467615 -88196738 - L2 LINE L2 0 3272 3229 1670 61 0 23 chr1 154468605 154468819 -88195534 + AluY SINE Alu 103 311 0 1314 215 0 4 chr1 154469492 154469738 -88194615 - MLT1A1 LTR MaLR -120 245 1 442 278 34 57 chr1 154470041 154470217 -88194136 + MIR SINE MIR 37 208 -54 1607 128 12 28 chr1 154470607 154470891 -88193462 + AluSx SINE Alu 38 317 0 359 257 0 0 chr1 154471002 154471076 -88193277 - L1MC4 LINE L1 -169 7873 7800 5129 220 68 81 chr1 154471082 154471763 -88192590 - L1MC4a LINE L1 -109 7699 7011 216 67 0 0 chr1 154471763 154471793 -88192560 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 5129 220 68 81 chr1 154471793 154472894 -88191459 - L1MC4a LINE L1 -797 7011 5940 517 261 22 22 chr1 154474084 154474222 -88190131 - L3 LINE CR1 -7 1570 1433 335 322 30 80 chr1 154474234 154474535 -88189818 + L2 LINE L2 2987 3272 0 259 308 96 0 chr1 154474544 154474648 -88189705 - L3 LINE CR1 -150 1427 1314 250 325 5 101 chr1 154475760 154475948 -88188405 + L2 LINE L2 3080 3249 -23 190 266 150 35 chr1 154476046 154476159 -88188194 - MER5B DNA MER1_type -30 148 23 217 368 0 0 chr1 154476255 154476342 -88188011 + L3 LINE CR1 382 468 -1109 799 258 110 24 chr1 154476383 154476674 -88187679 - MLT1I LTR MaLR -3 406 91 702 248 0 0 chr1 154477392 154477549 -88186804 + L1MC4 LINE L1 6894 7050 -992 2188 260 47 14 chr1 154477606 154478357 -88185996 + L2 LINE L2 1927 3074 -239 413 200 0 0 chr1 154478362 154478437 -88185916 + FLAM_A SINE Alu 1 75 -57 189 360 26 18 chr1 154478823 154478937 -88185416 - L3b LINE CR1 -346 1237 1123 208 250 136 23 chr1 154479805 154479893 -88184460 - L2 LINE L2 0 3313 3216 204 135 0 0 chr1 154479985 154480022 -88184331 + (TA)n Simple_repeat Simple_repeat 1 37 0 7111 53 0 0 chr1 154480023 154481098 -88183255 - L1PA6 LINE L1 -15 6139 5067 315 257 257 0 chr1 154481107 154481220 -88183133 - L2 LINE L2 -234 3079 2938 758 251 77 16 chr1 154481874 154482230 -88182123 + MLT1C LTR MaLR 1 467 0 596 273 92 18 chr1 154483623 154483850 -88180503 + MIR SINE MIR 19 262 0 383 308 30 20 chr1 154484260 154484458 -88179895 + MIR SINE MIR 2 201 -61 260 294 91 28 chr1 154484715 154484858 -88179495 - MIR SINE MIR -11 251 100 235 306 24 24 chr1 154484969 154485054 -88179299 - MIR SINE MIR -140 122 38 240 273 43 96 chr1 154485103 154485290 -88179063 + MER5B DNA MER1_type 1 177 -1 342 315 19 6 chr1 154485706 154485868 -88178485 - L1ME4a LINE L1 -265 5856 5693 267 133 0 0 chr1 154485884 154485929 -88178424 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 2037 121 0 20 chr1 154486041 154486338 -88178015 + AluSx SINE Alu 1 291 -21 2644 234 113 72 chr1 154486981 154488154 -88176199 - MER69B DNA AcHobo -3 1223 2 269 311 25 43 chr1 154488208 154488369 -88175984 + MIR SINE MIR 59 216 -46 450 259 121 101 chr1 154488639 154488994 -88175359 + L2 LINE L2 2897 3258 -14 2308 113 0 3 chr1 154489668 154489979 -88174374 - AluSx SINE Alu 0 312 3 241 327 108 14 chr1 154490509 154490653 -88173700 + MIR SINE MIR 4 157 -51 519 319 27 5 chr1 154491019 154491204 -88173149 + MER5A DNA MER1_type 1 189 0 252 216 113 41 chr1 154491314 154491411 -88172942 - MIR SINE MIR -86 122 19 213 39 0 0 chr1 154491520 154491546 -88172807 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 0 322 246 92 8 chr1 154491896 154492033 -88172320 + MIR3 SINE MIR 3 154 -75 255 278 0 0 chr1 154492144 154492216 -88172137 - MER103 DNA DNA -76 90 19 546 268 21 41 chr1 154492220 154492463 -88171890 - L2 LINE L2 -1 3312 3075 199 322 0 0 chr1 154493175 154493234 -88171119 - MIR SINE MIR -8 254 196 2780 184 21 32 chr1 154493308 154493915 -88170438 + MLT1E3 LTR MaLR 57 618 -6 440 283 48 61 chr1 154493917 154494065 -88170288 - MIR SINE MIR -62 146 4 869 121 15 23 chr1 154494147 154494279 -88170074 + AluSq/x SINE Alu 3 133 -179 313 163 0 0 chr1 154494357 154494406 -88169947 - MER63 DNA MER1_type -35 1025 977 397 211 114 26 chr1 154494407 154494521 -88169832 - MER63 DNA MER1_type -311 751 2 506 256 78 66 chr1 154496217 154496459 -88167894 - MIR SINE MIR -2 260 16 1897 200 90 22 chr1 154497550 154498005 -88166348 + MLT1D LTR MaLR 1 486 -19 2371 115 27 21 chr1 154498142 154498515 -88165838 - THE1C LTR MaLR 0 375 1 286 300 20 20 chr1 154498847 154498947 -88165406 + MIR3 SINE MIR 69 168 -40 181 290 81 0 chr1 154498979 154499041 -88165312 - MIR SINE MIR -70 192 126 372 43 0 0 chr1 154499650 154499696 -88164657 + (TG)n Simple_repeat Simple_repeat 2 47 0 1208 290 68 45 chr1 154500307 154501099 -88163254 + L1MEd LINE L1 121 930 -5189 359 229 76 46 chr1 154501137 154501268 -88163085 + L1ME3A LINE L1 3 137 -5982 374 307 70 40 chr1 154501579 154501879 -88162474 + L1ME3A LINE L1 581 889 -5230 444 260 147 20 chr1 154501893 154502328 -88162025 + L1ME3A LINE L1 4962 5460 -689 1609 137 11 36 chr1 154502334 154502612 -88161741 + THE1B LTR MaLR 94 364 0 11568 91 24 0 chr1 154502614 154504155 -88160198 + THE1B-int LTR MaLR 3 1580 0 2136 139 28 19 chr1 154504155 154504514 -88159839 + THE1B LTR MaLR 1 362 -2 253 276 53 0 chr1 154504520 154504596 -88159757 + L1ME3A LINE L1 5540 5619 -534 229 200 9 152 chr1 154504609 154504714 -88159639 + MER112 DNA MER1_type 5 94 -166 204 40 0 0 chr1 154504802 154504827 -88159526 + (TG)n Simple_repeat Simple_repeat 1 25 0 747 261 51 12 chr1 154505027 154505284 -88159069 + L1ME3A LINE L1 5648 5914 -239 194 274 137 0 chr1 154505513 154505586 -88158767 + L2 LINE L2 3157 3239 -33 1029 113 0 0 chr1 154505591 154505750 -88158603 + (GGAA)n Simple_repeat Simple_repeat 4 162 0 308 301 177 11 chr1 154507024 154507210 -88157143 - MIR SINE MIR -44 218 2 198 282 57 97 chr1 154507325 154507449 -88156904 - L2 LINE L2 -10 3262 3144 326 282 81 29 chr1 154507502 154507563 -88156790 - L2 LINE L2 -226 3046 2990 234 0 0 0 chr1 154507563 154507589 -88156764 + (TG)n Simple_repeat Simple_repeat 2 27 0 326 282 81 29 chr1 154507589 154507736 -88156617 - L2 LINE L2 -282 2990 2827 2711 219 70 17 chr1 154508269 154509022 -88155331 + Charlie1 DNA MER1_type 1451 2243 -518 4277 145 100 92 chr1 154509022 154509572 -88154781 - L1MC3 LINE L1 -41 7744 7109 302 206 41 41 chr1 154509572 154509645 -88154708 - MLT1F1 LTR MaLR -450 117 45 4277 145 100 92 chr1 154509645 154510044 -88154309 - L1MC3 LINE L1 -676 7109 6715 1430 210 130 34 chr1 154510052 154510576 -88153777 + Charlie1 DNA MER1_type 2188 2761 0 405 310 88 88 chr1 154510578 154510978 -88153375 + L2 LINE L2 2873 3272 0 360 210 0 0 chr1 154511116 154511178 -88153175 - L2 LINE L2 -5 3308 3247 2188 141 0 0 chr1 154511743 154512056 -88152297 + AluSq SINE Alu 1 313 0 584 185 48 20 chr1 154512130 154512276 -88152077 + Charlie5 DNA MER1_type 2430 2579 -33 335 292 26 9 chr1 154512968 154513081 -88151272 - MIR SINE MIR -123 139 25 437 118 0 0 chr1 154513168 154513244 -88151109 - L1MA4A LINE L1 -3 6300 6225 889 146 6 30 chr1 154513244 154513409 -88150944 + L1MA4A LINE L1 6003 6163 -140 254 275 117 8 chr1 154514128 154514248 -88150105 + L2 LINE L2 3179 3311 -2 225 274 57 57 chr1 154514416 154514540 -88149813 + L2 LINE L2 2935 3058 -214 258 345 0 0 chr1 154516222 154516309 -88148044 + (TA)n Simple_repeat Simple_repeat 2 88 0 934 231 51 83 chr1 154516720 154516807 -88147546 - MLT1J LTR MaLR -1 510 422 1847 185 46 0 chr1 154516807 154517136 -88147217 + MER2 DNA MER2_type 1 344 0 934 231 51 83 chr1 154517136 154517484 -88146869 - MLT1J LTR MaLR -89 422 1 280 393 0 0 chr1 154517663 154517798 -88146555 + L2 LINE L2 2925 3059 -213 180 313 0 21 chr1 154517900 154517948 -88146405 + L2 LINE L2 3132 3178 -94 422 286 0 8 chr1 154518048 154518167 -88146186 + MIR SINE MIR 25 142 -66 231 36 0 0 chr1 154518215 154518243 -88146110 + (CA)n Simple_repeat Simple_repeat 2 29 0 258 228 11 65 chr1 154518315 154518407 -88145946 - LTR67 LTR ERVL -14 543 457 382 291 6 86 chr1 154518578 154518753 -88145600 - MLT1K LTR MaLR -412 176 16 314 325 107 32 chr1 154519002 154519282 -88145071 + L2 LINE L2 3011 3311 -2 226 301 97 35 chr1 154519765 154519878 -88144475 - MIR SINE MIR -83 179 60 222 195 0 0 chr1 154520103 154520144 -88144209 + GA-rich Low_complexity Low_complexity 2 42 0 452 269 99 16 chr1 154520689 154520898 -88143455 - MIR SINE MIR -6 256 32 298 244 5 42 chr1 154520972 154521103 -88143250 + MLT1J1 LTR MaLR 311 432 -14 555 216 155 46 chr1 154522583 154522777 -88141576 - MER58C DNA MER1_type 0 215 1 188 183 0 100 chr1 154523068 154523128 -88141225 - MIR SINE MIR -91 171 118 434 209 9 38 chr1 154527265 154527370 -88136983 + MER5A DNA MER1_type 8 109 -80 269 271 119 17 chr1 154527646 154527764 -88136589 + MIR SINE MIR 25 154 -108 2483 48 0 29 chr1 154528853 154529162 -88135191 - AluY SINE Alu -11 300 1 261 232 0 0 chr1 154529296 154529352 -88135001 + MER103 DNA DNA 55 110 -56 4402 194 43 7 chr1 154529484 154530316 -88134037 + MER21B LTR ERV1 1 862 -1 21 0 0 0 chr1 154531192 154531213 -88133140 + AT_rich Low_complexity Low_complexity 1 21 0 261 270 11 11 chr1 154531947 154532036 -88132317 + L2 LINE L2 2978 3066 -206 248 245 121 77 chr1 154532363 154532636 -88131717 + MLT1I LTR MaLR 1 285 -124 959 230 77 12 chr1 154532932 154533315 -88131038 + MLT1J LTR MaLR 1 467 -44 545 240 190 6 chr1 154533319 154533498 -88130855 + L1ME1 LINE L1 5685 5896 -270 224 150 25 0 chr1 154534263 154534303 -88130050 + MIR SINE MIR 58 98 -164 1627 158 109 34 chr1 154534303 154534652 -88129701 + THE1C LTR MaLR 1 375 0 475 213 8 16 chr1 154534652 154534774 -88129579 + MIR SINE MIR 94 214 -48 1835 148 26 16 chr1 154535247 154535550 -88128803 + AluSx SINE Alu 1 306 -6 328 332 69 10 chr1 154535987 154536189 -88128164 + MIR SINE MIR 37 250 -12 335 330 191 5 chr1 154536997 154537206 -88127147 + MIR SINE MIR 2 249 -13 1007 173 44 84 chr1 154537759 154537984 -88126369 + MER8 DNA MER2_type 21 236 -3 1094 193 47 0 chr1 154538147 154538359 -88125994 - MER58A DNA MER1_type -2 222 1 426 306 27 0 chr1 154541035 154541146 -88123207 + MIR SINE MIR 31 144 -64 392 227 28 85 chr1 154541187 154541328 -88123025 - MIR SINE MIR -53 209 77 444 37 0 0 chr1 154542105 154542120 -88122233 + (CA)n Simple_repeat Simple_repeat 1 69 0 444 37 0 0 chr1 154542120 154542174 -88122179 + (CA)n Simple_repeat Simple_repeat 2 55 0 250 326 21 0 chr1 154543058 154543164 -88121189 + MIR SINE MIR 1 110 -98 661 150 30 126 chr1 154543164 154543331 -88121022 + L1MB8 LINE L1 5976 6126 -52 214 267 11 78 chr1 154543339 154543429 -88120924 + MIR SINE MIR 97 180 -82 227 289 87 47 chr1 154543580 154543729 -88120624 - L2 LINE L2 0 3313 3159 226 213 225 25 chr1 154544087 154544167 -88120186 + MIR SINE MIR 2 97 -165 1968 121 48 6 chr1 154544168 154544481 -88119872 + MSTA LTR MaLR 1 326 -102 565 168 0 0 chr1 154544581 154544676 -88119677 + MSTA LTR MaLR 334 428 0 196 353 115 8 chr1 154544708 154544830 -88119523 + MIR SINE MIR 127 261 -1 702 189 136 18 chr1 154545943 154546112 -88118241 - MER5A DNA MER1_type 0 189 1 355 280 55 90 chr1 154547197 154547397 -88116956 - L2 LINE L2 -50 3222 3030 28 0 0 0 chr1 154547415 154547443 -88116910 + AT_rich Low_complexity Low_complexity 1 28 0 1993 140 0 11 chr1 154547561 154547846 -88116507 + AluSx SINE Alu 3 284 -28 276 30 0 0 chr1 154547848 154547881 -88116472 + (CATA)n Simple_repeat Simple_repeat 2 34 0 364 307 0 39 chr1 154548243 154548396 -88115957 - L2 LINE L2 0 3313 3167 653 276 104 4 chr1 154548546 154548814 -88115539 + LTR33A LTR ERVL 226 520 -3 436 223 9 61 chr1 154549360 154549552 -88114801 - HsTC2 DNA Tc2 -1 1897 4 393 304 82 6 chr1 154549766 154549937 -88114416 + MIR3 SINE MIR 16 199 -9 1445 230 14 14 chr1 154550195 154550560 -88113793 + MLT1A1 LTR MaLR 1 365 0 347 299 24 61 chr1 154550970 154551134 -88113219 - MIR3 SINE MIR -31 177 20 243 0 0 0 chr1 154551393 154551420 -88112933 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1464 150 89 21 chr1 154551594 154551874 -88112479 - AluJo SINE Alu -1 311 13 1611 203 7 0 chr1 154553474 154553774 -88110579 + AluJo SINE Alu 1 302 -10 298 298 70 9 chr1 154553804 154553918 -88110435 + L2 LINE L2 2228 2348 -966 482 256 0 16 chr1 154554056 154554181 -88110172 + L2 LINE L2 3191 3313 0 273 339 75 16 chr1 154554212 154554398 -88109955 + L2 LINE L2 2575 2771 -543 24 32 0 0 chr1 154554750 154554781 -88109572 + AT_rich Low_complexity Low_complexity 1 31 0 187 246 33 49 chr1 154554847 154554908 -88109445 + L2 LINE L2 3204 3263 -9 213 65 0 0 chr1 154555709 154555740 -88108613 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr1 154555918 154555943 -88108410 + GC_rich Low_complexity Low_complexity 1 25 0 369 156 240 0 chr1 154556752 154556848 -88107505 + MER53 DNA DNA 24 142 -47 296 198 33 33 chr1 154557032 154557123 -88107230 + MER5B DNA MER1_type 1 91 -87 270 244 193 52 chr1 154557223 154557358 -88106995 + L2 LINE L2 3148 3301 -12 1864 83 31 8 chr1 154557527 154557781 -88106572 - AluY SINE Alu -15 296 37 608 298 63 32 chr1 154559104 154559356 -88104997 + MIR SINE MIR 2 261 -1 369 229 161 47 chr1 154560297 154560489 -88103864 - MER112 DNA MER1_type -6 254 41 180 283 0 33 chr1 154560844 154560904 -88103449 + L2 LINE L2 3251 3308 -5 386 323 104 5 chr1 154561674 154561894 -88102459 - MIR SINE MIR 0 262 21 298 207 49 49 chr1 154562409 154562491 -88101862 - L2 LINE L2 0 3272 3191 903 76 0 34 chr1 154562922 154563041 -88101312 + AluY SINE Alu 28 142 -169 1264 86 0 0 chr1 154563096 154563259 -88101094 + AluY SINE Alu 148 310 -1 1178 165 45 30 chr1 154563265 154563531 -88100822 + L1MD3 LINE L1 7726 7995 0 443 308 186 50 chr1 154563678 154564095 -88100258 + L3 LINE CR1 963 1471 -106 4248 174 56 35 chr1 154564095 154564940 -88099413 + MER21B LTR ERV1 1 862 -1 443 308 186 50 chr1 154564940 154565061 -88099292 + L3 LINE CR1 1471 1574 -3 1149 138 6 0 chr1 154565396 154565570 -88098783 - L1PA16 LINE L1 -9 6157 5983 750 314 167 20 chr1 154565831 154566274 -88098079 - L3 LINE CR1 -430 1147 640 207 360 33 46 chr1 154566440 154566593 -88097760 - L2 LINE L2 -1 3271 3121 236 273 63 97 chr1 154566704 154567113 -88097240 - L3 LINE CR1 -5 1572 1133 264 310 108 16 chr1 154567191 154567320 -88097033 - L3 LINE CR1 -444 1133 993 230 69 0 0 chr1 154567348 154567377 -88096976 + (T)n Simple_repeat Simple_repeat 1 29 0 552 271 43 14 chr1 154568012 154568219 -88096134 - MIR SINE MIR -48 214 2 355 191 64 11 chr1 154568237 154568331 -88096022 - L2 LINE L2 0 3272 3174 192 313 47 0 chr1 154568981 154569045 -88095308 - MIR3 SINE MIR -54 154 98 348 286 117 44 chr1 154569130 154569336 -88095017 + MLT1I LTR MaLR 64 284 -125 3169 58 10 15 chr1 154570145 154570555 -88093798 + L1PA10 LINE L1 5761 6168 0 22 0 0 0 chr1 154570671 154570693 -88093660 + AT_rich Low_complexity Low_complexity 1 22 0 298 315 93 76 chr1 154570885 154571241 -88093112 - L2 LINE L2 -1 3271 2910 2309 114 0 0 chr1 154571380 154571679 -88092674 - AluSx SINE Alu -13 299 1 233 337 30 41 chr1 154571947 154572116 -88092237 + L2 LINE L2 2918 3084 -188 186 323 32 0 chr1 154572204 154572266 -88092087 + MIR SINE MIR 43 106 -102 227 143 0 18 chr1 154573210 154573266 -88091087 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 461 234 90 14 chr1 154573350 154573495 -88090858 - L2 LINE L2 0 3313 3158 23 0 0 0 chr1 154573601 154573624 -88090729 + AT_rich Low_complexity Low_complexity 1 23 0 268 172 47 16 chr1 154575212 154575276 -88089077 + MIR SINE MIR 100 165 -97 203 259 82 59 chr1 154575357 154575442 -88088911 - L2 LINE L2 -56 3257 3171 270 326 74 0 chr1 154575727 154575862 -88088491 + MIR SINE MIR 46 190 -72 2362 84 7 0 chr1 154575988 154576284 -88088069 + AluSq SINE Alu 1 298 -15 185 314 70 0 chr1 154577216 154577302 -88087051 + MIR SINE MIR 41 132 -130 392 288 149 28 chr1 154579115 154579330 -88085023 + MIR SINE MIR 20 260 -2 294 73 0 0 chr1 154580630 154580671 -88083682 + (TG)n Simple_repeat Simple_repeat 1 41 0 3673 165 44 4 chr1 154581646 154582344 -88082009 + L1MB3 LINE L1 5451 6176 -7 32 0 0 0 chr1 154582344 154582376 -88081977 + AT_rich Low_complexity Low_complexity 1 32 0 233 136 91 0 chr1 154582445 154582489 -88081864 + LTR67 LTR ERVL 105 152 -405 * 688 247 59 91 chr1 154582455 154582795 -88081558 + MLT1J LTR MaLR 114 442 -69 2217 269 142 31 chr1 154582899 154583996 -88080357 + L2 LINE L2 1514 2732 -582 386 269 9 9 chr1 154584008 154584116 -88080237 - MIR SINE MIR -107 155 48 635 163 0 6 chr1 154584971 154585218 -88079135 + AluJ SINE Alu 1 297 -15 2456 76 0 3 chr1 154585218 154585522 -88078831 + AluY SINE Alu 1 303 -8 925 262 95 51 chr1 154586296 154586857 -88077496 - L2 LINE L2 0 3313 2718 2575 68 0 0 chr1 154586871 154587197 -88077156 - AluY SINE Alu 0 326 1 2341 175 46 53 chr1 154587305 154587848 -88076505 - L1MB5 LINE L1 -8 6166 5628 411 268 9 18 chr1 154587848 154587969 -88076384 - L2 LINE L2 -611 2703 2584 * 1050 270 154 24 chr1 154587959 154588451 -88075902 - L2 LINE L2 -1234 2080 1525 610 197 102 0 chr1 154588900 154589027 -88075326 + MIR SINE MIR 5 144 -118 319 178 82 14 chr1 154589711 154589733 -88074620 + MER3 DNA MER1_type 1 20 -142 4605 73 16 9 chr1 154589733 154590363 -88073990 + L1PA10 LINE L1 5535 6168 0 319 178 82 14 chr1 154590363 154590413 -88073940 + MER3 DNA MER1_type 20 78 -131 790 249 177 68 chr1 154591246 154591789 -88072564 + MLT1L LTR MaLR 6 607 -8 299 174 0 0 chr1 154592245 154592291 -88072062 - MER3 DNA MER1_type -131 78 33 810 38 0 28 chr1 154592295 154592401 -88071952 - L1PA10 LINE L1 0 6168 6066 435 239 11 0 chr1 154594283 154594375 -88069978 - MIR SINE MIR -71 191 99 257 375 0 0 chr1 154594668 154594740 -88069613 + L2 LINE L2 3193 3264 -8 701 154 147 26 chr1 154595101 154595257 -88069096 + MIR SINE MIR 85 259 -3 26 0 0 0 chr1 154595331 154595357 -88068996 + AT_rich Low_complexity Low_complexity 1 26 0 432 37 0 0 chr1 154596129 154596183 -88068170 + (TG)n Simple_repeat Simple_repeat 2 55 0 921 258 39 27 chr1 154598246 154598502 -88065851 - MIR SINE MIR -3 259 1 21 36 0 0 chr1 154599997 154600025 -88064328 + AT_rich Low_complexity Low_complexity 1 28 0 215 248 197 60 chr1 154601318 154601435 -88062918 + MIR SINE MIR 21 153 -109 393 22 0 0 chr1 154602023 154602069 -88062284 + (TG)n Simple_repeat Simple_repeat 1 46 0 1165 294 189 38 chr1 154602404 154602566 -88061787 + L2 LINE L2 2153 2289 -1024 1242 178 117 61 chr1 154602566 154602892 -88061461 + MER2 DNA MER2_type 1 344 0 1165 294 189 38 chr1 154602892 154603359 -88060994 + L2 LINE L2 2289 2684 -629 1910 165 29 9 chr1 154603359 154603699 -88060654 + MER7A DNA MER2_type 2 346 0 1165 294 189 38 chr1 154603699 154604070 -88060283 + L2 LINE L2 2684 3310 -3 307 339 66 26 chr1 154604361 154604576 -88059777 + MIR SINE MIR 36 260 -2 182 200 0 0 chr1 154605246 154605276 -88059077 + MIR SINE MIR 115 144 -118 637 319 31 4 chr1 154605883 154606112 -88058241 + L3b LINE CR1 1262 1496 -87 358 266 148 39 chr1 154606368 154606571 -88057782 + MIR SINE MIR 32 256 -6 331 236 179 24 chr1 154606750 154606873 -88057480 + MIR SINE MIR 20 161 -101 495 302 89 0 chr1 154606885 154607092 -88057261 - MIR SINE MIR -20 242 20 36 0 0 0 chr1 154608055 154608091 -88056262 + AT_rich Low_complexity Low_complexity 1 36 0 230 240 27 27 chr1 154608133 154608208 -88056145 + MER20B DNA MER1_type 289 363 -420 207 205 0 0 chr1 154608980 154609019 -88055334 + (TG)n Simple_repeat Simple_repeat 1 39 0 183 344 32 21 chr1 154610003 154610096 -88054257 + MIR SINE MIR 96 189 -73 227 242 16 32 chr1 154610215 154610277 -88054076 - MER5B DNA MER1_type -36 142 82 1074 213 46 65 chr1 154610470 154610734 -88053619 - MLT1D LTR MaLR -8 497 201 219 36 0 0 chr1 154610734 154610762 -88053591 + (TG)n Simple_repeat Simple_repeat 2 29 0 1074 213 46 65 chr1 154610762 154610875 -88053478 - MLT1D LTR MaLR -304 201 87 225 286 71 0 chr1 154610915 154610971 -88053382 - L2 LINE L2 -30 3283 3224 300 296 32 48 chr1 154611004 154611044 -88053309 - L3 LINE CR1 -3 1574 1535 953 172 63 0 chr1 154611044 154611218 -88053135 + MER5A DNA MER1_type 3 187 -2 300 296 32 48 chr1 154611218 154611302 -88053051 - L3 LINE CR1 -42 1535 1452 345 333 29 22 chr1 154611682 154611820 -88052533 + MIR3 SINE MIR 49 187 -21 669 229 188 10 chr1 154611879 154612071 -88052282 - MIR SINE MIR -32 230 5 2577 30 3 0 chr1 154612074 154612378 -88051975 + AluY SINE Alu 1 305 -6 2045 111 0 0 chr1 154613134 154613447 -88050906 + AluSc SINE Alu 3 315 0 490 259 9 0 chr1 154613688 154613796 -88050557 + MIR3 SINE MIR 93 201 -7 2016 173 40 3 chr1 154613884 154614236 -88050117 - MLT1A1 LTR MaLR 0 365 1 578 336 18 35 chr1 154614238 154614467 -88049886 - MIR SINE MIR -29 233 9 268 322 7 27 chr1 154614713 154614862 -88049491 + L1M2 LINE L1 5494 5639 -652 2165 104 0 0 chr1 154614978 154615275 -88049078 + AluSx SINE Alu 1 297 -15 569 259 92 33 chr1 154615413 154615718 -88048635 + L1ME4a LINE L1 5798 6120 -1 214 107 71 0 chr1 154615724 154615780 -88048573 + (TA)n Simple_repeat Simple_repeat 2 61 0 214 349 40 16 chr1 154616518 154616644 -88047709 - L2 LINE L2 -220 3052 2924 302 276 181 9 chr1 154617317 154617433 -88046920 + L2 LINE L2 3119 3254 -18 595 268 7 0 chr1 154617542 154617680 -88046673 - MER5B DNA MER1_type -4 174 36 387 324 81 29 chr1 154618090 154618263 -88046090 + MIR SINE MIR 31 212 -50 476 259 153 6 chr1 154619224 154619394 -88044959 - MIR SINE MIR -16 246 52 204 256 58 0 chr1 154621982 154622068 -88042285 + A-rich Low_complexity Low_complexity 4 94 0 390 281 25 89 chr1 154622220 154622423 -88041930 - MIR3 SINE MIR 0 208 19 1982 129 0 19 chr1 154622452 154622770 -88041583 + AluSx SINE Alu 1 312 0 618 239 0 0 chr1 154624408 154624525 -88039828 + MIR SINE MIR 56 172 -90 371 296 74 72 chr1 154624880 154625446 -88038907 + L2 LINE L2 2695 3252 -20 255 153 42 69 chr1 154626586 154626658 -88037695 + MLT1I LTR MaLR 80 149 -260 269 241 9 111 chr1 154626793 154626901 -88037452 + MLT1H LTR MaLR 453 549 0 22 35 0 0 chr1 154628177 154628206 -88036147 + AT_rich Low_complexity Low_complexity 1 29 0 487 257 110 0 chr1 154628842 154628978 -88035375 - MIR SINE MIR -16 246 96 300 305 146 7 chr1 154630227 154630378 -88033975 - MIR SINE MIR -70 192 21 277 316 52 37 chr1 154632540 154632676 -88031677 + MIR3 SINE MIR 4 141 -67 1356 266 106 27 chr1 154632719 154633200 -88031153 + MLT1G1 LTR MaLR 75 593 -2 353 143 32 159 chr1 154633440 154633566 -88030787 - MER45A DNA AcHobo 0 178 69 189 0 0 0 chr1 154633768 154633789 -88030564 + (T)n Simple_repeat Simple_repeat 1 21 0 535 252 64 27 chr1 154633801 154634105 -88030248 - LTR33 LTR ERVL -48 473 62 642 268 50 92 chr1 154638859 154639259 -88025094 + MLT1J LTR MaLR 110 492 -19 387 0 0 0 chr1 154639295 154639338 -88025015 + (CA)n Simple_repeat Simple_repeat 1 43 0 354 218 117 71 chr1 154639351 154639590 -88024763 + L1M4 LINE L1 3968 4217 -1929 23 0 0 0 chr1 154639796 154639819 -88024534 + AT_rich Low_complexity Low_complexity 1 23 0 494 247 100 86 chr1 154639902 154640193 -88024160 + L1ME4a LINE L1 5816 6110 -11 246 59 0 0 chr1 154640440 154640474 -88023879 - L1P LINE L1 -809 5357 5324 3045 141 15 32 chr1 154641204 154641735 -88022618 + L1MB7 LINE L1 5663 6184 0 1407 179 32 3 chr1 154641880 154642188 -88022165 + L1M4 LINE L1 4960 5276 -870 * 4988 160 42 4 chr1 154642182 154643116 -88021237 + L1MB5 LINE L1 5195 6166 -8 339 291 97 0 chr1 154643357 154643460 -88020893 + MIR SINE MIR 33 145 -63 437 227 65 13 chr1 154643627 154643781 -88020572 + MER113 DNA MER1_type? 1 162 -359 229 178 22 0 chr1 154644390 154644435 -88019918 + L2 LINE L2 3224 3269 -3 26 0 0 0 chr1 154644920 154644946 -88019407 + AT_rich Low_complexity Low_complexity 1 26 0 275 262 71 12 chr1 154645015 154645099 -88019254 - MIR SINE MIR -65 197 109 185 180 20 60 chr1 154645102 154645152 -88019201 - MIR3 SINE MIR -149 59 12 234 284 0 25 chr1 154645718 154645799 -88018554 + L1MC4 LINE L1 6640 6718 -1324 209 250 18 0 chr1 154646136 154646192 -88018161 + (TTA)n Simple_repeat Simple_repeat 2 58 0 380 302 82 13 chr1 154646803 154646962 -88017391 - MIR3 SINE MIR -22 186 17 692 163 55 114 chr1 154647103 154647305 -88017048 + MER20 DNA MER1_type 29 218 -1 2055 156 32 40 chr1 154649279 154649657 -88014696 - THE1C LTR MaLR 0 375 1 233 211 154 0 chr1 154650202 154650254 -88014099 + MIR SINE MIR 33 92 -116 597 257 123 5 chr1 154650295 154650482 -88013871 - MIR SINE MIR 0 262 54 1794 161 17 7 chr1 154650482 154650780 -88013573 + AluJo SINE Alu 1 301 -11 2483 209 112 54 chr1 154650787 154651601 -88012752 + L1ME LINE L1 136 996 -5209 783 188 129 0 chr1 154651606 154651776 -88012577 + MER3 DNA MER1_type 1 192 -17 575 176 38 8 chr1 154651786 154651917 -88012436 + L1ME LINE L1 992 1126 -5079 1995 137 3 7 chr1 154651925 154652232 -88012121 + AluSq SINE Alu 1 306 -7 1010 256 38 46 chr1 154652261 154652714 -88011639 + L1ME LINE L1 1926 2374 -4022 273 260 14 0 chr1 154652801 154652874 -88011479 + (TA)n Simple_repeat Simple_repeat 2 75 0 326 294 18 82 chr1 154653212 154653382 -88010971 + MIR3 SINE MIR 5 163 -45 1874 120 33 4 chr1 154653450 154653749 -88010604 - AluSp SINE Alu 0 307 1 26 30 0 0 chr1 154653850 154653883 -88010470 + AT_rich Low_complexity Low_complexity 1 33 0 252 122 0 0 chr1 154654020 154654061 -88010292 + (CA)n Simple_repeat Simple_repeat 2 42 0 259 301 14 0 chr1 154654091 154654164 -88010189 + MIR3 SINE MIR 108 181 -27 619 233 101 5 chr1 154654685 154654874 -88009479 - MIR SINE MIR -45 217 11 261 280 45 15 chr1 154656902 154657034 -88007319 + L2 LINE L2 2364 2499 -815 335 273 83 64 chr1 154657089 154657353 -88007000 - L2 LINE L2 -75 3238 2970 363 205 0 48 chr1 154657393 154657476 -88006877 + L2 LINE L2 3235 3313 0 276 120 0 0 chr1 154658145 154658195 -88006158 + (TG)n Simple_repeat Simple_repeat 2 51 0 206 333 34 26 chr1 154659346 154659463 -88004890 - MIR SINE MIR -90 118 1 1638 148 58 22 chr1 154660407 154660685 -88003668 - AluJo SINE Alu -24 288 1 286 305 154 51 chr1 154660716 154661319 -88003034 + L2 LINE L2 1987 2651 -663 428 277 43 86 chr1 154712725 154713003 -87951350 - Charlie8 DNA MER1_type -1001 1416 64 2213 82 17 3 chr1 154713126 154713420 -87950933 - AluSq SINE Alu -15 298 1 249 241 19 0 chr1 154713547 154713601 -87950752 - L2 LINE L2 -9 3304 3250 387 263 193 56 chr1 154713849 154714041 -87950312 + MIR SINE MIR 12 231 -31 776 177 73 0 chr1 154714041 154714205 -87950148 - MER104 DNA MER2_type -1 179 4 387 263 193 56 chr1 154714205 154714222 -87950131 + MIR SINE MIR 231 244 -18 2624 48 0 3 chr1 154714328 154714637 -87949716 + AluY SINE Alu 1 308 -3 791 161 0 15 chr1 154715002 154715132 -87949221 - FLAM_C SINE Alu -5 128 1 243 235 0 0 chr1 154715274 154715372 -87948981 + C-rich Low_complexity Low_complexity 1 98 0 417 227 23 61 chr1 154715432 154715564 -87948789 - FLAM_C SINE Alu -6 127 1 2217 116 0 7 chr1 154715578 154715888 -87948465 - AluSx SINE Alu -4 308 1 285 344 38 15 chr1 154716000 154716131 -87948222 + MIR SINE MIR 52 185 -77 514 298 62 14 chr1 154716131 154716339 -87948014 + MIR SINE MIR 9 226 -36 313 323 123 44 chr1 154716350 154716691 -87947662 + L2 LINE L2 2343 2710 -604 26 74 0 0 chr1 154716904 154716958 -87947395 + AT_rich Low_complexity Low_complexity 1 54 0 1306 188 9 94 chr1 154717053 154717372 -87946981 - AluJo SINE Alu -20 292 1 287 313 0 12 chr1 154717399 154717482 -87946871 + L2 LINE L2 3232 3313 0 2182 122 10 0 chr1 154717743 154718046 -87946307 - AluSx SINE Alu -6 306 1 1710 135 90 0 chr1 154718053 154718320 -87946033 - AluJb SINE Alu -21 291 1 3265 171 67 91 chr1 154718742 154719569 -87944784 + L1MB3 LINE L1 4158 5003 -1180 2087 126 7 0 chr1 154719569 154719863 -87944490 + AluSx SINE Alu 1 296 -16 3265 171 67 91 chr1 154719863 154720431 -87943922 + L1MB3 LINE L1 5003 5583 -600 2200 107 14 0 chr1 154720431 154720722 -87943631 + AluSg SINE Alu 1 295 -15 3265 171 67 91 chr1 154720722 154720836 -87943517 + L1MB3 LINE L1 5583 5698 -485 1591 180 0 0 chr1 154720836 154721086 -87943267 + AluJb SINE Alu 1 250 -62 3265 171 67 91 chr1 154721086 154721398 -87942955 + L1MB3 LINE L1 5698 5925 -258 1463 154 57 4 chr1 154721409 154721655 -87942698 - MER4B LTR ERV1 -7 603 345 44184 44 8 1 chr1 154721659 154727742 -87936611 - L1PA4 LINE L1 -26 6129 2 1913 111 85 62 chr1 154727742 154728095 -87936258 - MER4B LTR ERV1 -247 363 3 1083 175 42 38 chr1 154728098 154728195 -87936158 + L1MB3 LINE L1 5928 6023 -160 2013 147 0 0 chr1 154728195 154728508 -87935845 - AluSx SINE Alu 0 313 1 1083 175 42 38 chr1 154728508 154728649 -87935704 + L1MB3 LINE L1 6023 6168 -15 576 268 20 0 chr1 154728678 154728831 -87935522 + L1ME LINE L1 5504 5659 -511 1618 164 7 39 chr1 154728832 154729035 -87935318 - AluJo SINE Alu -15 297 106 2701 86 14 33 chr1 154729035 154729166 -87935187 - THE1A LTR MaLR 0 355 223 2413 97 0 0 chr1 154729166 154729474 -87934879 - AluSc SINE Alu -1 308 1 2701 86 14 33 chr1 154729474 154729704 -87934649 - THE1A LTR MaLR -132 223 1 1618 164 7 39 chr1 154729704 154729805 -87934548 - AluJo SINE Alu -206 106 3 410 200 11 21 chr1 154729835 154729930 -87934423 + L1ME LINE L1 5684 5777 -385 198 0 0 0 chr1 154730395 154730417 -87933936 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 468 130 162 15 chr1 154731087 154731212 -87933141 - MER69 DNA AcHobo -3 2523 43 1912 149 10 0 chr1 154731845 154732141 -87932212 + AluSx SINE Alu 9 307 -5 280 306 0 0 chr1 154732501 154732573 -87931780 + L2 LINE L2 3199 3270 -2 190 363 20 20 chr1 154732717 154732819 -87931534 - L2 LINE L2 -553 2761 2660 526 267 0 17 chr1 154733328 154733508 -87930845 - L1MEc LINE L1 -5307 1089 913 306 268 6 24 chr1 154733516 154733618 -87930735 + L1MDa LINE L1 1367 1571 -4811 1584 146 60 29 chr1 154733644 154733925 -87930428 + AluJo SINE Alu 1 290 -22 476 191 11 0 chr1 154733950 154734044 -87930309 + L1MDa LINE L1 2683 2777 -3605 378 317 30 41 chr1 154734099 154734367 -87929986 + L1MC4 LINE L1 4991 5255 -891 1424 234 80 41 chr1 154734396 154734858 -87929495 + L1MC4 LINE L1 5302 5781 -2027 423 272 114 64 chr1 154734866 154735532 -87928821 + L1MC4 LINE L1 7226 8015 -27 560 288 106 75 chr1 154735554 154736099 -87928254 - HAL1 LINE L1 -1094 1413 852 2314 113 3 0 chr1 154736317 154736627 -87927726 - AluSp SINE Alu -2 311 1 2000 153 0 3 chr1 154736976 154737283 -87927070 - AluJo SINE Alu -6 306 1 198 286 14 14 chr1 154737750 154737820 -87926533 + MIR SINE MIR 166 235 -27 1694 191 0 14 chr1 154738182 154738475 -87925878 - AluJb SINE Alu -23 289 1 1930 128 10 7 chr1 154738542 154738851 -87925502 - AluSx SINE Alu 0 312 2 1233 245 117 11 chr1 154739624 154739975 -87924378 + LTR16C LTR ERVL 104 491 0 181 411 0 0 chr1 154740017 154740090 -87924263 - MIR3 SINE MIR -6 202 130 759 167 8 8 chr1 154740174 154740295 -87924058 + FLAM_C SINE Alu 2 123 -16 198 0 0 0 chr1 154740295 154740317 -87924036 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1726 181 7 0 chr1 154740505 154740781 -87923572 + AluJo SINE Alu 2 279 -33 2281 122 3 0 chr1 154741187 154741527 -87922826 + AluSx SINE Alu 1 341 0 732 187 8 0 chr1 154741800 154741923 -87922430 + FLAM_A SINE Alu 2 125 -8 359 235 41 20 chr1 154742004 154742102 -87922251 + L1ME LINE L1 5521 5620 -501 1690 161 21 0 chr1 154742106 154742385 -87921968 + AluJo SINE Alu 5 289 -23 2198 108 0 10 chr1 154742518 154742814 -87921539 + AluSg SINE Alu 1 293 -17 2357 212 45 82 chr1 154743024 154743410 -87920943 + L1 LINE L1 4563 4962 -1184 1485 219 14 3 chr1 154743410 154743697 -87920656 + AluJb SINE Alu 1 290 -22 2357 212 45 82 chr1 154743697 154744029 -87920324 + L1 LINE L1 4962 5250 -896 2991 112 31 0 chr1 154744029 154744450 -87919903 + MER57B LTR ERV1 1 434 0 2357 212 45 82 chr1 154744450 154744552 -87919801 + L1 LINE L1 5250 5354 -792 1880 80 24 0 chr1 154744528 154744779 -87919574 + L1PA15 LINE L1 5572 5828 -338 * 4601 96 74 11 chr1 154744783 154745442 -87918911 + L1PA7 LINE L1 2 702 -5759 15849 79 5 24 chr1 154745478 154747714 -87916639 + L1PA7 LINE L1 3558 5783 -686 2480 90 0 6 chr1 154747714 154748026 -87916327 + AluSg SINE Alu 1 310 0 15849 79 5 24 chr1 154748026 154748701 -87915652 + L1PA7 LINE L1 5783 6469 0 2283 130 17 3 chr1 154748701 154749044 -87915309 + L1PA15 LINE L1 5814 6164 -1 4251 157 44 20 chr1 154749057 154749190 -87915163 + L1MB2 LINE L1 5285 5413 -758 205 28 0 56 chr1 154749190 154749226 -87915127 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 2438 77 7 7 chr1 154749236 154749546 -87914807 + AluY SINE Alu 1 310 -1 4251 157 44 20 chr1 154749546 154749883 -87914470 + L1MB2 LINE L1 5421 5748 -423 225 0 0 0 chr1 154749883 154749908 -87914445 + (CA)n Simple_repeat Simple_repeat 2 26 0 4251 157 44 20 chr1 154749908 154750269 -87914084 + L1MB2 LINE L1 5748 6152 -19 22 0 0 0 chr1 154750269 154750291 -87914062 + AT_rich Low_complexity Low_complexity 1 22 0 226 98 0 49 chr1 154750291 154750332 -87914021 + Alu SINE Alu 96 134 -168 27 0 0 0 chr1 154750332 154750359 -87913994 + AT_rich Low_complexity Low_complexity 1 27 0 249 108 0 0 chr1 154750375 154750412 -87913941 - L1M4 LINE L1 -1286 4860 4824 2193 97 0 22 chr1 154750454 154750765 -87913588 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr1 154750860 154750883 -87913470 + AT_rich Low_complexity Low_complexity 1 23 0 769 169 23 0 chr1 154750976 154751106 -87913247 + FLAM_C SINE Alu 1 133 0 330 67 0 0 chr1 154751756 154751801 -87912552 + (T)n Simple_repeat Simple_repeat 1 45 0 1851 156 3 10 chr1 154752066 154752361 -87911992 + AluJb SINE Alu 1 293 -19 465 298 55 17 chr1 154752576 154752757 -87911596 - MIR3 SINE MIR -6 202 15 1665 171 25 7 chr1 154753992 154754273 -87910080 + AluJo SINE Alu 1 286 -26 244 272 31 86 chr1 154754653 154754815 -87909538 + MER103 DNA DNA 3 155 -11 2373 87 0 23 chr1 154754980 154755289 -87909064 - AluSx SINE Alu -10 302 1 299 275 33 8 chr1 154755373 154755493 -87908860 - L1M4 LINE L1 -2301 3845 3723 385 179 15 0 chr1 154755494 154755561 -87908792 + AluJ/FLAM SINE Alu 1 68 -234 1858 129 0 0 chr1 154755661 154755925 -87908428 + AluSx SINE Alu 46 309 -3 754 262 31 9 chr1 154755932 154756157 -87908196 - L1M4 LINE L1 -2409 3737 3508 1938 251 63 75 chr1 154756468 154756661 -87907692 + L1M4c LINE L1 754 948 -5436 2198 113 3 0 chr1 154756661 154756954 -87907399 - AluSx SINE Alu -18 294 1 1938 251 63 75 chr1 154756954 154757047 -87907306 + L1M4c LINE L1 948 1041 -5343 2242 111 10 0 chr1 154757047 154757354 -87906999 + AluSg SINE Alu 1 310 0 1938 251 63 75 chr1 154757354 154757794 -87906559 + L1M4c LINE L1 1041 1485 -4899 2239 128 0 0 chr1 154757794 154758091 -87906262 - AluSx SINE Alu -15 297 1 1938 251 63 75 chr1 154758091 154758218 -87906135 + L1M4c LINE L1 1485 1599 -4785 198 0 0 0 chr1 154758218 154758240 -87906113 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1938 251 63 75 chr1 154758240 154758350 -87906003 + L1M4c LINE L1 1599 1709 -4675 2226 89 7 0 chr1 154758472 154758753 -87905600 + AluSq SINE Alu 11 293 -20 1085 184 36 70 chr1 154758754 154759085 -87905268 + L1M4c LINE L1 2445 2764 -3618 1272 263 67 29 chr1 154759100 154759545 -87904808 + LTR16B LTR ERVL 3 464 0 388 272 68 108 chr1 154759547 154759900 -87904453 + HERV16 LTR ERVL 3 341 -4655 1854 137 0 25 chr1 154759914 154760222 -87904131 + AluSx SINE Alu 12 312 0 1769 292 157 10 chr1 154760473 154760670 -87903683 + HERV16 LTR ERVL 610 777 -4219 2143 96 0 36 chr1 154760670 154760812 -87903541 + AluY SINE Alu 1 128 -183 2934 10 0 0 chr1 154760812 154761124 -87903229 + AluYb8 SINE Alu 1 312 -6 2143 96 0 36 chr1 154761124 154761283 -87903070 + AluY SINE Alu 128 291 -20 1769 292 157 10 chr1 154761283 154761787 -87902566 + HERV16 LTR ERVL 777 1414 -3582 25 0 0 0 chr1 154761967 154761992 -87902361 + AT_rich Low_complexity Low_complexity 1 25 0 206 271 10 0 chr1 154762252 154762348 -87902005 + (TA)n Simple_repeat Simple_repeat 2 98 0 348 24 0 0 chr1 154762364 154762405 -87901948 + (CA)n Simple_repeat Simple_repeat 2 42 0 1620 163 51 0 chr1 154762412 154762669 -87901684 + AluJo SINE Alu 1 270 -42 1498 207 3 27 chr1 154763175 154763474 -87900879 + AluJb SINE Alu 1 292 -20 348 83 56 28 chr1 154763475 154763583 -87900770 + (TA)n Simple_repeat Simple_repeat 1 111 0 262 104 64 58 chr1 154763573 154763746 -87900607 + (CATATA)n Simple_repeat Simple_repeat 2 175 0 * 663 45 57 40 chr1 154763725 154763901 -87900452 + (CTATA)n Simple_repeat Simple_repeat 2 180 0 597 165 0 0 chr1 154763926 154764017 -87900336 + FRAM SINE Alu 43 133 -43 611 95 34 39 chr1 154764029 154764208 -87900145 + (TA)n Simple_repeat Simple_repeat 1 178 0 461 184 170 48 chr1 154764912 154765059 -87899294 - MER96 DNA MER1_type? -9 166 2 1182 128 66 33 chr1 154765752 154765994 -87898359 - L1MB8 LINE L1 0 6178 5929 2058 127 0 7 chr1 154766021 154766313 -87898040 + AluJb SINE Alu 22 311 -1 2089 148 0 0 chr1 154766543 154766853 -87897500 + AluJb SINE Alu 1 310 -2 709 203 98 0 chr1 154766960 154767123 -87897230 - MER5A DNA MER1_type 0 189 11 22 35 0 0 chr1 154767685 154767714 -87896639 + AT_rich Low_complexity Low_complexity 1 29 0 294 195 13 52 chr1 154768475 154768552 -87895801 - L2 LINE L2 -19 3294 3221 1688 132 66 11 chr1 154768858 154769131 -87895222 - AluJo SINE Alu -14 298 11 449 231 21 23 chr1 154769483 154769677 -87894676 + MER8 DNA MER2_type 1 238 -1 603 174 0 0 chr1 154769726 154769841 -87894512 - AluJb SINE Alu -2 310 196 765 200 143 0 chr1 154770096 154770271 -87894082 - MIR SINE MIR -32 230 31 22 56 0 0 chr1 154771760 154771796 -87892557 + GC_rich Low_complexity Low_complexity 1 36 0 207 147 15 103 chr1 154773098 154773166 -87891187 + L2 LINE L2 3221 3282 -31 568 163 140 140 chr1 154773532 154773676 -87890677 - AluJb SINE Alu -10 302 159 1830 150 7 7 chr1 154773676 154773976 -87890377 - AluJb SINE Alu -1 311 12 568 163 140 140 chr1 154773976 154773998 -87890355 - AluJb SINE Alu -153 159 138 2452 79 0 3 chr1 154773998 154774303 -87890050 - AluY SINE Alu -2 309 6 568 163 140 140 chr1 154774303 154774356 -87889997 - AluJb SINE Alu -173 139 82 870 146 0 0 chr1 154774435 154774558 -87889795 + FLAM_C SINE Alu 1 123 -20 985 171 109 0 chr1 154774614 154774807 -87889546 + AluJb SINE Alu 86 299 -13 1425 151 108 0 chr1 154774813 154775071 -87889282 + AluJo SINE Alu 1 286 -26 2186 125 0 10 chr1 154775440 154775752 -87888601 - AluSx SINE Alu -3 309 1 1873 114 71 0 chr1 154776289 154776570 -87887783 - AluSg SINE Alu -9 301 1 542 193 167 102 chr1 154777591 154778021 -87886332 - Charlie7 DNA MER1_type -88 2524 2067 846 175 0 7 chr1 154778021 154778164 -87886189 + AluJb SINE Alu 157 298 -14 30 59 0 0 chr1 154778991 154779042 -87885311 + AT_rich Low_complexity Low_complexity 1 51 0 629 186 8 0 chr1 154779043 154779184 -87885169 - FLAM_C SINE Alu 0 142 1 2233 202 166 18 chr1 154779184 154779631 -87884722 - Charlie2 DNA MER1_type -62 2800 2420 2384 95 3 0 chr1 154779631 154779937 -87884416 + AluSq SINE Alu 2 308 -5 2233 202 166 18 chr1 154779937 154780309 -87884044 - Charlie2 DNA MER1_type -442 2420 1860 259 246 0 0 chr1 154780348 154780413 -87883940 - Charlie2 DNA MER1_type -2615 247 183 1648 181 57 77 chr1 154780486 154780889 -87883464 - MSTD LTR MaLR 0 396 2 899 189 33 193 chr1 154781481 154782025 -87882328 + L2 LINE L2 2317 2773 -541 296 274 161 0 chr1 154782065 154782189 -87882164 + L2 LINE L2 2934 3077 -236 2306 112 0 0 chr1 154782449 154782752 -87881601 + AluSx SINE Alu 1 303 -9 1937 109 25 0 chr1 154783628 154783902 -87880451 - AluSx SINE Alu -31 281 1 1409 128 41 8 chr1 154783943 154784185 -87880168 - L1MA8 LINE L1 -6 6285 6036 201 262 0 0 chr1 154784756 154784817 -87879536 + (TA)n Simple_repeat Simple_repeat 1 61 0 2313 81 3 10 chr1 154784873 154785169 -87879184 - AluSq SINE Alu -19 294 1 441 250 43 9 chr1 154785267 154785383 -87878970 - L2 LINE L2 -3 3310 3191 525 146 11 11 chr1 154786196 154786285 -87878068 + AluJb SINE Alu 199 287 -25 1238 147 0 93 chr1 154786949 154787208 -87877145 - AluJb SINE Alu -77 235 1 250 326 41 10 chr1 154788417 154788515 -87875838 + MIR SINE MIR 38 138 -124 212 303 163 43 chr1 154789151 154789428 -87874925 + L2 LINE L2 2963 3272 0 366 241 15 73 chr1 154789515 154789652 -87874701 + MIR SINE MIR 50 178 -84 284 332 124 26 chr1 154790596 154790903 -87873450 + L2 LINE L2 2431 2767 -547 186 229 49 33 chr1 154791102 154791163 -87873190 + L2 LINE L2 2987 3048 -224 1125 164 14 19 chr1 154791622 154791835 -87872518 + AluJo SINE Alu 11 222 -90 614 283 73 9 chr1 154792073 154792292 -87872061 - MIR SINE MIR -2 260 28 390 135 0 54 chr1 154792467 154792541 -87871812 + MER21B LTR ERV1 1 70 -793 254 191 0 21 chr1 154792575 154792622 -87871731 + MER21B LTR ERV1 40 85 -778 * 3702 178 45 50 chr1 154792608 154793436 -87870917 + MER21B LTR ERV1 39 862 -1 1754 174 3 0 chr1 154793801 154794083 -87870270 - AluJb SINE Alu -28 284 2 1588 174 23 57 chr1 154794127 154794426 -87869927 + AluJo SINE Alu 1 289 -23 225 0 0 0 chr1 154794564 154794589 -87869764 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 351 284 43 28 chr1 154795281 154795422 -87868931 + MIR SINE MIR 59 201 -61 277 290 67 47 chr1 154795524 154795717 -87868636 - HAL1 LINE L1 -56 2451 2255 1013 196 0 0 chr1 154795723 154795896 -87868457 - FAM SINE Alu -2 173 1 592 122 31 0 chr1 154795909 154796007 -87868346 - AluSx SINE Alu -9 301 201 851 106 0 9 chr1 154796007 154796120 -87868233 - AluSx SINE Alu -201 112 1 1984 141 0 7 chr1 154796469 154796760 -87867593 + AluSx SINE Alu 2 290 -22 291 28 0 0 chr1 154796760 154796796 -87867557 + (CA)n Simple_repeat Simple_repeat 2 37 0 686 176 32 0 chr1 154797093 154797218 -87867135 + FLAM_C SINE Alu 1 129 -14 2240 108 7 0 chr1 154798243 154798548 -87865805 - AluSp SINE Alu -6 307 1 1528 128 34 110 chr1 154798551 154798735 -87865618 - AluJo SINE Alu -10 302 152 2559 52 0 13 chr1 154798735 154799040 -87865313 - AluY SINE Alu -10 301 1 1528 128 34 110 chr1 154799040 154799182 -87865171 - AluJo SINE Alu -160 152 1 4096 76 26 0 chr1 154799767 154800305 -87864048 - L1PA8A LINE L1 -28 6103 5552 2236 77 20 10 chr1 154800301 154800751 -87863602 + L1PA8A LINE L1 5112 5558 -573 * 22 0 0 0 chr1 154802710 154802732 -87861621 + AT_rich Low_complexity Low_complexity 1 22 0 1849 206 11 6 chr1 154803015 154803370 -87860983 - MLT1A1 LTR MaLR -8 357 1 2832 19 0 0 chr1 154803412 154803723 -87860630 + AluYa5 SINE Alu 1 311 0 308 203 0 0 chr1 154803800 154803864 -87860489 - MIR SINE MIR -119 143 80 1965 104 97 0 chr1 154806034 154806312 -87858041 - AluSq SINE Alu -8 305 1 470 244 113 63 chr1 154806568 154806734 -87857619 - L1ME4a LINE L1 -54 6067 5911 1638 183 3 31 chr1 154806734 154807051 -87857302 - AluJo SINE Alu -4 308 1 470 244 113 63 chr1 154807051 154807065 -87857288 - L1ME4a LINE L1 -210 5911 5899 192 77 0 0 chr1 154807065 154807091 -87857262 + (CA)n Simple_repeat Simple_repeat 2 27 0 470 244 113 63 chr1 154807091 154807352 -87857001 - L1ME4a LINE L1 -222 5899 5603 2127 179 121 0 chr1 154808579 154809027 -87855326 - L1MB3 LINE L1 -1 6182 5681 15002 108 33 46 chr1 154809030 154811454 -87852899 - Tigger1 DNA MER2_type -4 2414 24 1121 236 4 31 chr1 154811462 154811721 -87852632 - L1MB3 LINE L1 -500 5683 5432 1087 156 97 34 chr1 154811724 154811962 -87852391 - AluJo SINE Alu -6 306 54 22 0 0 0 chr1 154811972 154811994 -87852359 + AT_rich Low_complexity Low_complexity 1 22 0 842 186 6 148 chr1 154812013 154812324 -87852029 - L1MB3 LINE L1 -977 5169 4903 227 167 24 0 chr1 154812397 154812439 -87851914 - L1MB3 LINE L1 -1201 4945 4903 227 167 24 0 chr1 154812512 154812554 -87851799 - L1MB3 LINE L1 -1201 4945 4903 2064 114 10 3 chr1 154812891 154813180 -87851173 - AluSx SINE Alu -21 291 1 285 250 52 35 chr1 154813906 154814082 -87850271 + L1MC4a LINE L1 5195 5381 -802 2177 132 0 3 chr1 154814136 154814439 -87849914 - AluSx SINE Alu -10 302 1 248 164 73 0 chr1 154814441 154814496 -87849857 + L1MC4a LINE L1 5369 5427 -2381 275 236 42 0 chr1 154814576 154814648 -87849705 + L1MC4a LINE L1 5579 5653 -468 265 296 148 6 chr1 154814684 154814853 -87849500 + L1MC4a LINE L1 5718 5910 -1898 561 401 79 42 chr1 154815590 154816300 -87848053 + L2 LINE L2 189 924 -2390 1940 175 138 17 chr1 154816440 154816846 -87847507 - LTR32 LTR ERVL 0 471 17 215 350 141 0 chr1 154817288 154817465 -87846888 - MIR SINE MIR -14 248 47 2970 159 86 21 chr1 154817506 154818258 -87846095 - MER21A LTR ERV1 -7 924 1 1473 213 101 43 chr1 154818808 154819245 -87845108 - MLT1C LTR MaLR 0 467 6 248 130 152 0 chr1 154819266 154819312 -87845041 - MLT1C-int LTR MaLR -14 1357 1305 429 139 38 0 chr1 154819424 154819503 -87844850 - L1MD2 LINE L1 0 6359 6278 1759 181 137 26 chr1 154819513 154819967 -87844386 - L1MD1 LINE L1 -139 6103 5600 6488 125 25 37 chr1 154819972 154820484 -87843869 - L1MC1 LINE L1 0 6333 5817 2120 119 0 47 chr1 154820484 154820804 -87843549 - AluSg SINE Alu -5 305 1 6488 125 25 37 chr1 154820804 154821469 -87842884 - L1MC1 LINE L1 -516 5817 5165 547 207 15 37 chr1 154821480 154821615 -87842738 - L1MC1 LINE L1 -1185 4961 4830 234 0 0 0 chr1 154821706 154821732 -87842621 + (TTA)n Simple_repeat Simple_repeat 2 27 0 441 0 0 0 chr1 154822727 154822776 -87841577 + (TG)n Simple_repeat Simple_repeat 1 49 0 2298 111 0 13 chr1 154823050 154823366 -87840987 + AluSx SINE Alu 1 312 0 786 269 15 39 chr1 154823622 154823882 -87840471 + MIR SINE MIR 9 262 0 1037 185 96 98 chr1 154824627 154824983 -87839370 - MLT1A1 LTR MaLR -10 355 1 2216 92 0 3 chr1 154824990 154825273 -87839080 - AluSc SINE Alu -16 293 12 387 227 92 42 chr1 154825315 154825434 -87838919 - MLT1J LTR MaLR -160 351 227 258 237 68 0 chr1 154825436 154825495 -87838858 - MLT1J2 LTR MaLR -338 112 50 324 70 0 0 chr1 154825511 154825554 -87838799 + FRAM SINE Alu 58 100 -66 359 206 0 0 chr1 154825887 154825960 -87838393 + LTR30 LTR ERV1 552 624 -98 197 220 68 103 chr1 154827410 154827524 -87836829 + MIR SINE MIR 79 197 -65 343 290 46 8 chr1 154827890 154828021 -87836332 + MIR SINE MIR 102 237 -25 1398 158 59 22 chr1 154828050 154828322 -87836031 - L1MB2 LINE L1 -2 6169 5888 1685 194 7 7 chr1 154828445 154828755 -87835598 - AluJb SINE Alu -2 310 1 22 0 0 0 chr1 154829677 154829699 -87834654 + AT_rich Low_complexity Low_complexity 1 22 0 228 35 0 0 chr1 154830428 154830457 -87833896 + (TTCTG)n Simple_repeat Simple_repeat 2 30 0 1907 144 24 0 chr1 154830458 154830749 -87833604 - AluSx SINE Alu -14 298 1 894 129 0 0 chr1 154830809 154830941 -87833412 - FLAM_C SINE Alu 0 133 2 2398 84 46 6 chr1 154831856 154832202 -87832151 - L1PA13 LINE L1 0 6163 5804 279 307 73 20 chr1 154832592 154832742 -87831611 + MIR SINE MIR 92 249 -13 180 0 0 0 chr1 154834210 154834230 -87830123 + (GA)n Simple_repeat Simple_repeat 1 20 0 327 292 75 43 chr1 154834442 154834603 -87829750 - MLT2E LTR ERVL -54 574 409 274 309 127 9 chr1 154834673 154834783 -87829570 - MLT2E LTR ERVL -469 159 37 218 283 0 0 chr1 154835723 154835783 -87828570 + MIR3 SINE MIR 107 166 -42 1170 133 7 137 chr1 154836106 154836377 -87827976 + MER46A DNA MER2_type 1 236 0 632 283 0 12 chr1 154836624 154836790 -87827563 + MER5B DNA MER1_type 3 166 -12 1893 164 0 13 chr1 154837291 154837601 -87826752 + AluJb SINE Alu 1 306 -6 206 214 24 0 chr1 154837836 154837878 -87826475 + CT-rich Low_complexity Low_complexity 2 44 0 310 286 57 73 chr1 154840346 154840538 -87823815 + MIR SINE MIR 26 214 -48 665 291 17 35 chr1 154842432 154842662 -87821691 - MIR SINE MIR -11 251 26 360 152 0 0 chr1 154842860 154842926 -87821427 + (TG)n Simple_repeat Simple_repeat 1 66 0 1563 151 0 61 chr1 154844007 154844126 -87820227 + AluJo SINE Alu 21 146 -166 2059 85 0 17 chr1 154844126 154844419 -87819934 + AluY SINE Alu 14 301 -10 1563 151 0 61 chr1 154844419 154844610 -87819743 + AluJo SINE Alu 146 312 0 252 0 0 0 chr1 154844753 154844781 -87819572 + (T)n Simple_repeat Simple_repeat 1 28 0 200 189 38 19 chr1 154847070 154847123 -87817230 + MIR SINE MIR 108 161 -101 1865 140 0 3 chr1 154847362 154847655 -87816698 + AluJo SINE Alu 1 292 -20 1179 174 94 30 chr1 154848539 154848829 -87815524 - AluJo SINE Alu 0 307 1 294 284 134 8 chr1 154848975 154849102 -87815251 - L1MC4 LINE L1 -142 7900 7758 840 213 67 24 chr1 154849106 154849360 -87814993 - L1MC4 LINE L1 -423 7619 7355 203 241 379 7 chr1 154849582 154849727 -87814626 - MIR SINE MIR -1 261 63 219 69 0 0 chr1 154850577 154850606 -87813747 + (T)n Simple_repeat Simple_repeat 1 29 0 476 307 67 22 chr1 154851519 154851786 -87812567 + MARNA DNA Mariner 135 413 -173 1673 156 35 0 chr1 154854320 154854609 -87809744 + AluSx SINE Alu 5 303 -9 2369 71 0 19 chr1 154855394 154855704 -87808649 - AluY SINE Alu -7 304 1 199 263 0 79 chr1 154856462 154856538 -87807815 - MIR SINE MIR -71 191 122 636 154 15 62 chr1 154856742 154856872 -87807481 - FLAM_A SINE Alu -9 124 1 181 279 33 16 chr1 154856974 154857035 -87807318 - MER5A DNA MER1_type -24 165 104 1150 153 30 0 chr1 154857045 154857248 -87807105 - AluJb SINE Alu -9 303 95 251 302 47 12 chr1 154857731 154857817 -87806536 - MIR3 SINE MIR -35 173 85 376 264 168 20 chr1 154858002 154858199 -87806154 + MIR SINE MIR 31 256 -6 1760 184 91 35 chr1 154858889 154859350 -87805003 - Charlie4a DNA MER1_type -21 487 1 1020 177 56 44 chr1 154859495 154859541 -87804812 - MER33 DNA MER1_type -2301 284 240 1255 191 129 18 chr1 154859541 154859813 -87804540 + AluJo SINE Alu 1 302 0 1020 177 56 44 chr1 154859813 154860056 -87804297 - MER33 DNA MER1_type -2345 240 1 401 305 99 17 chr1 154860057 154860229 -87804124 - MIR3 SINE MIR -6 202 8 207 325 37 69 chr1 154860755 154860943 -87803410 + L2 LINE L2 3088 3269 -3 1222 254 74 52 chr1 154861521 154861942 -87802411 - MLT1J LTR MaLR -4 507 78 709 189 19 19 chr1 154862041 154862200 -87802153 - L1MA10 LINE L1 -2 6332 6174 588 179 49 60 chr1 154862213 154862397 -87801956 - L1ME2 LINE L1 -169 5995 5814 * 3568 185 76 45 chr1 154862384 154862429 -87801924 - L1ME2 LINE L1 -816 5330 5288 876 137 0 50 chr1 154862429 154862568 -87801785 - FLAM_C SINE Alu -1 132 1 3568 185 76 45 chr1 154862568 154862784 -87801569 - L1ME2 LINE L1 -858 5288 5080 2151 108 0 0 chr1 154862784 154863080 -87801273 - AluSg SINE Alu -14 296 1 1966 121 6 46 chr1 154863089 154863412 -87800941 - AluSg SINE Alu 0 310 1 1972 118 23 3 chr1 154863417 154863443 -87800910 - AluSx SINE Alu 0 312 288 366 23 0 0 chr1 154863443 154863486 -87800867 + (TG)n Simple_repeat Simple_repeat 2 44 0 1972 118 23 3 chr1 154863486 154863765 -87800588 - AluSx SINE Alu -24 288 1 3568 185 76 45 chr1 154863765 154863819 -87800534 - L1ME2 LINE L1 -1076 5070 5019 1518 176 52 3 chr1 154863819 154864109 -87800244 - AluJo SINE Alu -6 306 3 3568 185 76 45 chr1 154864109 154864804 -87799549 - L1ME2 LINE L1 -1127 5019 4270 590 288 48 30 chr1 154865397 154865640 -87798713 - L1MEd LINE L1 -4862 1257 1074 1760 166 0 14 chr1 154865640 154865960 -87798393 - AluJb SINE Alu 0 312 1 590 288 48 30 chr1 154865960 154866112 -87798241 - L1MEd LINE L1 -5045 1074 926 345 201 30 112 chr1 154866185 154866319 -87798034 - L1MEd LINE L1 -5965 154 32 215 306 108 27 chr1 154866481 154866592 -87797761 + L2 LINE L2 3180 3299 -14 2429 56 0 0 chr1 154866654 154866958 -87797395 - AluSc SINE Alu -5 304 1 223 226 38 0 chr1 154867177 154867230 -87797123 - L2 LINE L2 -8 3264 3210 272 296 84 89 chr1 154867507 154867720 -87796633 + MIR SINE MIR 44 255 -7 5892 121 11 6 chr1 154868623 154868961 -87795392 - L1PA16 LINE L1 0 6166 5831 2367 64 3 0 chr1 154868961 154869259 -87795094 - AluY SINE Alu -12 299 1 5892 121 11 6 chr1 154869259 154870228 -87794125 - L1PA16 LINE L1 -335 5831 4855 369 0 0 0 chr1 154870390 154870431 -87793922 + (TG)n Simple_repeat Simple_repeat 2 42 0 358 273 115 34 chr1 154870562 154870771 -87793582 - MIR SINE MIR -7 255 30 2123 118 3 0 chr1 154871005 154871310 -87793043 - AluSq SINE Alu -7 306 1 749 222 57 28 chr1 154872356 154872568 -87791785 + L1ME3A LINE L1 5944 6161 -9 653 302 58 5 chr1 154872585 154872774 -87791579 + MIR SINE MIR 57 255 -7 1175 270 81 64 chr1 154873584 154874342 -87790011 + L2 LINE L2 2522 3313 0 506 229 76 0 chr1 154874473 154874591 -87789762 + MIR SINE MIR 12 138 -124 2233 62 10 20 chr1 154874995 154875299 -87789054 - AluY SINE Alu -10 301 1 207 0 0 0 chr1 154875343 154875366 -87788987 + (T)n Simple_repeat Simple_repeat 1 23 0 496 262 40 27 chr1 154875428 154875613 -87788740 - MIR SINE MIR -58 204 20 399 240 16 24 chr1 154876663 154876788 -87787565 + MIR SINE MIR 57 180 -82 192 247 55 41 chr1 154877398 154877471 -87786882 + L2 LINE L2 3238 3311 -2 2084 117 3 0 chr1 154877889 154878180 -87786173 + AluSq SINE Alu 1 292 -21 365 200 25 12 chr1 154878208 154878288 -87786065 + L2 LINE L2 3212 3292 -21 * 412 258 67 18 chr1 154878287 154878452 -87785901 - MIR SINE MIR -59 203 33 620 186 29 36 chr1 154878989 154879129 -87785224 + MER5A DNA MER1_type 27 165 -24 1178 156 24 9 chr1 154879145 154879357 -87784996 - MER20 DNA MER1_type -1 218 4 546 284 154 6 chr1 154879371 154879533 -87784820 + MER5A DNA MER1_type 4 189 0 252 333 43 0 chr1 154879533 154879605 -87784748 - MIR3 SINE MIR -46 162 87 869 106 14 14 chr1 154879799 154879941 -87784412 - L1MC3 LINE L1 -339 7446 7305 2072 110 14 0 chr1 154880418 154880708 -87783645 - AluSq SINE Alu -19 294 1 2270 177 27 56 chr1 154881008 154881425 -87782928 - MLT1D LTR MaLR -1 504 103 2184 75 0 24 chr1 154881425 154881719 -87782634 - AluY SINE Alu -19 292 6 2270 177 27 56 chr1 154881719 154881820 -87782533 - MLT1D LTR MaLR -402 103 1 246 276 48 38 chr1 154881833 154881938 -87782415 + MIR SINE MIR 132 237 -25 235 351 43 0 chr1 154882239 154882333 -87782020 + L2 LINE L2 2954 3051 -221 1646 118 0 0 chr1 154882606 154882834 -87781519 - AluSg SINE Alu -82 228 1 1706 148 20 14 chr1 154882834 154883131 -87781222 + L1PB4 LINE L1 5858 6156 0 839 266 91 53 chr1 154883376 154883737 -87780616 - L2 LINE L2 -2 3311 2937 213 281 93 50 chr1 154884838 154884977 -87779376 - MIR3 SINE MIR -7 201 57 327 266 0 161 chr1 154886178 154886370 -87777983 + MIR3 SINE MIR 25 185 -23 277 375 97 24 chr1 154886803 154887174 -87777179 - L2 LINE L2 -3 3269 2872 2314 66 0 38 chr1 154888045 154888362 -87775991 + AluY SINE Alu 1 305 -6 498 204 139 0 chr1 154888584 154888692 -87775661 + FLAM_A SINE Alu 1 123 -10 2279 238 99 56 chr1 154888844 154889731 -87774622 + L1M4 LINE L1 2 926 -5616 231 218 0 0 chr1 154889764 154889819 -87774534 - L1MC5 LINE L1 -101 7860 7806 415 220 18 37 chr1 154889963 154890072 -87774281 - L1ME2 LINE L1 -66 6098 5992 189 0 0 0 chr1 154890337 154890358 -87773995 + (TGG)n Simple_repeat Simple_repeat 1 21 0 268 288 18 77 chr1 154892012 154892182 -87772171 - LTR16C LTR ERVL 0 491 332 776 219 7 0 chr1 154892929 154893077 -87771276 + FRAM SINE Alu 1 57 0 214 154 0 0 chr1 154893077 154893116 -87771237 + (TAAA)n Simple_repeat Simple_repeat 3 180 0 214 182 30 15 chr1 154894105 154894171 -87770182 + CT-rich Low_complexity Low_complexity 2 68 0 193 323 172 0 chr1 154895224 154895317 -87769036 + MIR SINE MIR 8 116 -146 235 242 103 82 chr1 154895628 154895733 -87768620 - L1M4 LINE L1 -2142 4004 3903 2149 128 3 0 chr1 154895733 154896029 -87768324 - AluSx SINE Alu -15 297 1 235 242 103 82 chr1 154896029 154896051 -87768302 - L1M4 LINE L1 -2243 3903 3883 2170 143 17 42 chr1 154896051 154896354 -87767999 + MER7A DNA MER2_type 1 293 -2745 1912 151 14 0 chr1 154896354 154896658 -87767695 - AluSx SINE Alu 0 312 1 2170 143 17 42 chr1 154896658 154896711 -87767642 + MER7A DNA MER2_type 293 346 0 235 242 103 82 chr1 154896711 154896776 -87767577 - L1M4 LINE L1 -2263 3883 3807 2440 47 3 20 chr1 154896798 154897097 -87767256 - AluSp SINE Alu -19 294 1 563 326 131 22 chr1 154897127 154897708 -87766645 + L2 LINE L2 2620 3296 -17 286 298 58 10 chr1 154897837 154897941 -87766412 - L3 LINE CR1 -8 1569 1461 1951 119 0 11 chr1 154897945 154898222 -87766131 - AluSq SINE Alu -15 298 25 441 311 77 50 chr1 154898913 154899135 -87765218 + MIR SINE MIR 20 247 -15 451 276 31 37 chr1 154899682 154899845 -87764508 + MIR3 SINE MIR 17 178 -30 214 275 142 50 chr1 154900295 154900415 -87763938 - MIR SINE MIR -1 261 131 264 326 149 27 chr1 154900915 154901176 -87763177 - L2 LINE L2 -89 3224 2932 1127 290 56 30 chr1 154901322 154901578 -87762775 - MLT1I LTR MaLR -6 403 132 2226 124 0 0 chr1 154901578 154901877 -87762476 + AluSx SINE Alu 1 299 -13 1127 290 56 30 chr1 154901877 154902013 -87762340 - MLT1I LTR MaLR -277 132 1 571 305 20 25 chr1 154903258 154903461 -87760892 + MIR3 SINE MIR 2 203 -5 1884 126 3 63 chr1 154903511 154903828 -87760525 + AluSx SINE Alu 3 300 -12 413 324 14 0 chr1 154903921 154904063 -87760290 + MIR SINE MIR 119 262 0 180 77 0 0 chr1 154904898 154904924 -87759429 + (TGG)n Simple_repeat Simple_repeat 1 26 0 542 277 28 52 chr1 154905555 154905768 -87758585 - L2 LINE L2 0 3313 3106 589 329 99 31 chr1 154905788 154906274 -87758079 + L2 LINE L2 1309 1827 -1487 2752 87 3 0 chr1 154906290 154906646 -87757707 + L1PA13 LINE L1 5805 6161 -2 1034 160 57 11 chr1 154906659 154906964 -87757389 - L1M4 LINE L1 -728 5450 5140 948 307 157 14 chr1 154907029 154907671 -87756682 + L2 LINE L2 1940 2673 -641 21 0 0 0 chr1 154907804 154907825 -87756528 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 154907937 154907960 -87756393 + AT_rich Low_complexity Low_complexity 1 23 0 534 282 75 34 chr1 154907968 154908644 -87755709 - L1MEd LINE L1 -863 1627 904 698 112 20 0 chr1 154908735 154908833 -87755520 - AluJo SINE Alu -178 134 35 278 67 22 0 chr1 154908841 154908886 -87755467 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 4429 42 0 0 chr1 154908886 154909405 -87754948 - L1PA5 LINE L1 -24 6130 5612 237 297 81 61 chr1 154909423 154909566 -87754787 - L1MEd LINE L1 -5269 850 698 2996 171 23 27 chr1 154909566 154910164 -87754189 - L1MB3 LINE L1 -2 6181 5586 237 297 81 61 chr1 154910164 154910266 -87754087 - L1MEd LINE L1 -5421 698 600 345 315 122 14 chr1 154910716 154911000 -87753353 + L2 LINE L2 2725 3050 -222 478 306 56 14 chr1 154911114 154911474 -87752879 - L1M4 LINE L1 -1015 5131 4757 1064 129 7 0 chr1 154911629 154911784 -87752569 + L1P3 LINE L1 10 165 -6296 15594 57 10 2 chr1 154911784 154914424 -87749929 + L1PA6 LINE L1 3500 6154 0 272 268 113 49 chr1 154914638 154914780 -87749573 - MLT1J LTR MaLR -343 168 18 431 310 0 0 chr1 154914852 154914997 -87749356 - L1M4 LINE L1 -1440 4706 4562 198 0 0 0 chr1 154915001 154915023 -87749330 + (T)n Simple_repeat Simple_repeat 1 22 0 234 62 0 0 chr1 154915056 154915088 -87749265 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 23635 20 0 0 chr1 154915088 154918575 -87745778 - L1HS LINE L1 -16 6139 2653 250 244 191 48 chr1 154918590 154918947 -87745406 - L1M4 LINE L1 -1593 4553 4146 731 90 17 56 chr1 154918947 154919125 -87745228 + (TTCC)n Simple_repeat Simple_repeat 1 171 0 480 202 0 48 chr1 154919154 154919342 -87745011 + CT-rich Low_complexity Low_complexity 1 179 0 1074 78 18 6 chr1 154919342 154919509 -87744844 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 2129 139 3 0 chr1 154919547 154919857 -87744496 + AluY SINE Alu 1 311 0 237 272 27 122 chr1 154919869 154920029 -87744324 - L1M4 LINE L1 -2013 4133 4011 1865 146 4 4 chr1 154920029 154920351 -87744002 + AluSx SINE Alu 1 322 0 237 272 27 122 chr1 154920351 154920483 -87743870 - L1M4 LINE L1 -2135 4011 3868 1734 158 70 10 chr1 154920486 154920784 -87743569 - MSTD LTR MaLR 0 396 81 22 0 0 0 chr1 154920784 154920806 -87743547 + AT_rich Low_complexity Low_complexity 1 22 0 13723 200 54 20 chr1 154920806 154921158 -87743195 - L1PB1 LINE L1 -1 6866 6528 263 49 24 0 chr1 154921158 154921199 -87743154 + (TA)n Simple_repeat Simple_repeat 2 43 0 13723 200 54 20 chr1 154921199 154925563 -87738790 - L1PB1 LINE L1 -339 6528 2048 1368 89 6 6 chr1 154925565 154925745 -87738608 + AluY SINE Alu 103 282 -29 376 45 0 0 chr1 154925847 154925891 -87738462 + (A)n Simple_repeat Simple_repeat 1 44 0 4923 130 77 5 chr1 154925892 154927664 -87736689 - L1PB1 LINE L1 -4814 2049 3 589 203 1 18 chr1 154927664 154927777 -87736576 - MSTD LTR MaLR -273 101 7 3234 225 51 65 chr1 154927786 154928613 -87735740 - MSTD-int LTR MaLR -14 1721 907 264 116 0 23 chr1 154928613 154928656 -87735697 - MSTD LTR MaLR -354 42 1 28 0 0 0 chr1 154928732 154928760 -87735593 + AT_rich Low_complexity Low_complexity 1 28 0 15938 138 19 5 chr1 154928770 154931152 -87733201 + Tigger1 DNA MER2_type 5 2418 0 209 197 0 45 chr1 154931310 154931376 -87732977 + A-rich Low_complexity Low_complexity 3 65 0 476 285 28 34 chr1 154931500 154931791 -87732562 + L1M4 LINE L1 2241 2529 -3617 276 303 55 21 chr1 154931817 154931962 -87732391 + MLT1L LTR MaLR 466 615 0 26 30 0 0 chr1 154932242 154932275 -87732078 + AT_rich Low_complexity Low_complexity 1 33 0 906 257 58 0 chr1 154932468 154932709 -87731644 - MLT1F1 LTR MaLR 0 567 313 239 275 67 58 chr1 154932960 154933080 -87731273 - L1MEd LINE L1 -5936 183 63 25 95 0 0 chr1 154933305 154933379 -87730974 + AT_rich Low_complexity Low_complexity 1 74 0 264 254 0 0 chr1 154933592 154933655 -87730698 - L2 LINE L2 -965 2349 2287 2264 246 61 11 chr1 154933658 154934284 -87730069 - L2 LINE L2 -1140 2174 1518 2153 128 3 0 chr1 154934475 154934772 -87729581 - AluSx SINE Alu -14 298 1 24 0 0 0 chr1 154935530 154935554 -87728799 + AT_rich Low_complexity Low_complexity 1 24 0 212 271 123 33 chr1 154936252 154936374 -87727979 - L2 LINE L2 -264 3008 2876 * 790 222 115 13 chr1 154936368 154936602 -87727751 + MIR SINE MIR 5 262 0 630 233 56 75 chr1 154937561 154937827 -87726526 - MIR SINE MIR 0 262 2 733 167 9 0 chr1 154937932 154938046 -87726307 + MLT1B LTR MaLR 276 390 0 1821 212 9 3 chr1 154938104 154938439 -87725914 + MLT-int LTR MaLR 1263 1599 -136 233 349 101 9 chr1 154939722 154939831 -87724522 + L3 LINE CR1 233 351 -1226 1650 110 4 9 chr1 154939835 154940092 -87724261 + AluSc SINE Alu 65 320 0 23 33 0 0 chr1 154940857 154940887 -87723466 + AT_rich Low_complexity Low_complexity 1 30 0 231 281 247 0 chr1 154941372 154941461 -87722892 + MIR SINE MIR 39 149 -113 204 309 148 0 chr1 154941839 154941920 -87722433 + MIR SINE MIR 164 256 -6 7058 173 49 73 chr1 154942572 154944192 -87720161 + MER45R DNA AcHobo 1 1581 0 202 170 149 0 chr1 154944399 154944446 -87719907 + L2 LINE L2 3255 3308 -5 377 225 40 60 chr1 154944641 154944792 -87719561 + MER103 DNA DNA 17 164 -2 398 297 32 60 chr1 154945034 154945219 -87719134 + MIR SINE MIR 73 252 -10 977 117 2 7 chr1 154945411 154945583 -87718770 - L1MB1 LINE L1 -1 6167 6029 3927 111 19 2 chr1 154945618 154946194 -87718159 - L1PA14 LINE L1 -4 7595 7010 19772 175 26 13 chr1 154946295 154948033 -87716320 - L1PA14 LINE L1 -749 6835 5121 2297 79 23 26 chr1 154948033 154948338 -87716015 + AluY SINE Alu 1 304 -7 19772 175 26 13 chr1 154948338 154949403 -87714950 - L1PA14 LINE L1 -2463 5121 4071 1908 144 4 4 chr1 154949403 154949719 -87714634 - AluSc SINE Alu 0 316 1 19772 175 26 13 chr1 154949719 154950820 -87713533 - L1PA14 LINE L1 -3513 4071 2986 2087 142 6 0 chr1 154950820 154951131 -87713222 - AluSq SINE Alu 0 313 1 19772 175 26 13 chr1 154951131 154953712 -87710641 - L1PA14 LINE L1 -4598 2986 11 493 301 156 7 chr1 154953712 154954001 -87710352 + L2 LINE L2 2267 2598 -716 1301 279 61 34 chr1 154954059 154954468 -87709885 + LTR16C LTR ERVL 70 489 -2 501 306 154 13 chr1 154954491 154955048 -87709305 + L2 LINE L2 2653 3301 -12 23 86 0 0 chr1 154955135 154955193 -87709160 + AT_rich Low_complexity Low_complexity 1 58 0 256 300 90 20 chr1 154955212 154955312 -87709041 - L2 LINE L2 -4 3268 3162 6415 23 0 0 chr1 154955479 154956210 -87708143 - L1PA4 LINE L1 -1 6154 5424 257 317 3 22 chr1 154956210 154956335 -87708018 - MIR SINE MIR -78 130 16 185 147 29 0 chr1 154957306 154957340 -87707013 - L3 LINE CR1 -246 1331 1297 608 327 80 18 chr1 154958043 154958441 -87705912 + LTR16A LTR ERVL 16 438 -12 1180 331 69 22 chr1 154958455 154959078 -87705275 + HERV16 LTR ERVL 5 656 -4340 361 294 42 0 chr1 154959338 154959457 -87704896 + LTR16A LTR ERVL 240 363 -87 1697 195 35 48 chr1 154959544 154959939 -87704414 + MLT1B LTR MaLR 1 390 0 190 191 0 0 chr1 154960016 154960058 -87704295 + L2 LINE L2 3269 3310 -3 1988 171 0 0 chr1 154960187 154960485 -87703868 + AluSx SINE Alu 1 298 -14 2403 82 0 3 chr1 154960629 154960932 -87703421 - AluY SINE Alu -9 302 1 518 206 61 6 chr1 154962089 154962254 -87702099 + MER104 DNA MER2_type 4 177 -3 495 297 43 40 chr1 154963123 154963399 -87700954 - L2 LINE L2 -499 2815 2539 180 111 0 0 chr1 154963990 154964017 -87700336 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 275 297 250 16 chr1 154964184 154964376 -87699977 - MIR SINE MIR -6 256 20 216 97 0 0 chr1 154964910 154964941 -87699412 + (TA)n Simple_repeat Simple_repeat 1 31 0 1891 142 12 52 chr1 154965227 154965552 -87698801 - AluSx SINE Alu 0 312 1 1330 249 72 45 chr1 154967125 154967654 -87696699 + HAL1 LINE L1 1243 1785 -722 1884 250 65 44 chr1 154967791 154968681 -87695672 - L1MDa LINE L1 -3161 3054 2145 319 310 82 39 chr1 154968688 154968943 -87695410 - L1MDa LINE L1 -4274 2122 1857 360 308 19 13 chr1 154968961 154969117 -87695236 - L1MDa LINE L1 -4614 1782 1626 410 254 11 11 chr1 154969516 154969693 -87694660 + CT-rich Low_complexity Low_complexity 3 179 0 274 304 0 0 chr1 154970495 154970574 -87693779 + MIR SINE MIR 25 103 -105 356 291 82 6 chr1 154972041 154972199 -87692154 - MIR SINE MIR -14 248 79 191 315 197 34 chr1 154972359 154972537 -87691816 - L3b LINE CR1 -88 1495 1289 278 366 23 17 chr1 154972604 154972779 -87691574 - MIR3 SINE MIR 0 208 33 289 289 35 63 chr1 154972782 154972929 -87691424 + MIR SINE MIR 3 144 -68 1980 196 58 58 chr1 154973039 154973538 -87690815 - MLT1F LTR MaLR -25 517 19 455 248 135 77 chr1 154974182 154974404 -87689949 + L2 LINE L2 2218 2452 -862 370 274 142 40 chr1 154974409 154974635 -87689718 + MIR SINE MIR 4 252 -10 184 348 160 21 chr1 154974641 154975009 -87689344 + L2 LINE L2 2502 2957 -357 188 362 114 19 chr1 154975882 154975987 -87688366 - L2 LINE L2 -5 3267 3153 240 35 0 0 chr1 154976143 154976172 -87688181 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 315 308 54 23 chr1 154978097 154978209 -87686144 - L2 LINE L2 0 3272 3157 451 288 82 21 chr1 154978209 154978452 -87685901 + MIR SINE MIR 1 258 -4 563 232 22 42 chr1 154978754 154979104 -87685249 - L1MC5 LINE L1 -33 7928 7529 619 277 121 16 chr1 154979112 154979368 -87684985 - L2 LINE L2 -1636 1678 1396 373 250 113 16 chr1 154979422 154979546 -87684807 - MIR SINE MIR -57 151 16 266 0 0 29 chr1 154979552 154979587 -87684766 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1697 131 4 0 chr1 154979591 154979827 -87684526 - AluSx SINE Alu -22 290 54 647 91 63 140 chr1 154980115 154980258 -87684095 + LTR34 LTR ERV1 1 132 -567 656 319 15 11 chr1 154980302 154980562 -87683791 - L3 LINE CR1 -90 1487 1227 500 235 65 35 chr1 154981163 154981333 -87683020 - MER97c DNA MER1_type? -912 178 4 330 26 0 0 chr1 154981623 154981662 -87682691 + (TG)n Simple_repeat Simple_repeat 1 39 0 423 315 42 84 chr1 154982323 154982609 -87681744 - L2 LINE L2 0 3272 2999 182 347 150 37 chr1 154983068 154983362 -87680991 + L2 LINE L2 2946 3272 0 953 195 0 32 chr1 154983702 154983887 -87680466 + MER5A DNA MER1_type 8 186 -3 371 370 15 0 chr1 154983898 154984033 -87680320 - MER5A DNA MER1_type 0 189 53 255 328 22 30 chr1 154983921 154984055 -87680298 + MER5A DNA MER1_type 35 167 -22 * 613 140 112 0 chr1 154986402 154986509 -87677844 + 5S rRNA rRNA 1 119 -2 1896 161 0 32 chr1 154986624 154986934 -87677419 - AluJb SINE Alu -10 302 3 4013 125 9 18 chr1 154987561 154988283 -87676070 + L1PB4 LINE L1 5159 5873 -283 243 0 0 0 chr1 154988674 154988701 -87675652 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 477 0 0 0 chr1 154988700 154988753 -87675600 + (GA)n Simple_repeat Simple_repeat 1 53 0 326 310 155 10 chr1 154989079 154989279 -87675074 + MIR SINE MIR 23 251 -11 770 249 139 27 chr1 154990948 154991322 -87673031 + L2 LINE L2 2862 3277 -36 2279 138 78 2 chr1 154991710 154992108 -87672245 + MSTA LTR MaLR 1 428 0 185 261 123 0 chr1 154993617 154993682 -87670671 + MIR SINE MIR 123 195 -67 187 286 0 0 chr1 155194643 155194685 -87469668 - L2 LINE L2 -92 3180 3139 1988 106 0 4 chr1 155194810 155195084 -87469269 - AluSq SINE Alu -11 302 30 1357 277 101 2 chr1 155195197 155195612 -87468741 - MLT1G1 LTR MaLR -139 456 1 260 229 14 14 chr1 155195680 155195750 -87468603 + MIR SINE MIR 179 248 -14 297 75 0 0 chr1 155195789 155195829 -87468524 + (CAT)n Simple_repeat Simple_repeat 1 40 0 189 289 87 19 chr1 155195858 155195962 -87468391 - MIR SINE MIR -64 144 34 742 258 35 10 chr1 155196811 155197009 -87467344 - MIR SINE MIR -11 251 49 386 258 25 17 chr1 155197728 155197848 -87466505 - Zaphod DNA AcHobo 0 4031 3911 848 295 85 18 chr1 155198001 155198282 -87466071 - MER115 DNA AcHobo -367 326 27 931 218 109 19 chr1 155198337 155198548 -87465805 - MIR SINE MIR -28 234 5 493 302 106 3 chr1 155199274 155199494 -87464859 + MIR SINE MIR 17 256 -6 311 368 153 0 chr1 155200048 155200257 -87464096 + L2 LINE L2 2547 2787 -527 255 200 24 94 chr1 155200260 155200345 -87464008 - MLT1K LTR MaLR -2 586 508 234 188 10 125 chr1 155200345 155200356 -87463997 - LTR67 LTR ERVL -2 555 471 413 236 71 36 chr1 155200507 155200647 -87463706 - MLT1K LTR MaLR -304 284 140 358 350 77 36 chr1 155200724 155200998 -87463355 + L2 LINE L2 2807 3091 -181 990 220 29 41 chr1 155201058 155201303 -87463050 - MIR SINE MIR 0 262 21 256 270 0 0 chr1 155202211 155202264 -87462089 - MIR SINE MIR -14 248 193 1165 191 64 69 chr1 155202264 155202516 -87461837 + MER2 DNA MER2_type 1 252 -92 2242 86 0 13 chr1 155202516 155202817 -87461536 - AluSc SINE Alu -12 297 1 1165 191 64 69 chr1 155202817 155202910 -87461443 + MER2 DNA MER2_type 252 344 0 256 270 0 0 chr1 155202910 155202930 -87461423 - MIR SINE MIR -68 194 175 742 284 186 30 chr1 155202937 155203377 -87460976 - L2 LINE L2 -1 3312 2804 552 278 30 0 chr1 155203432 155203565 -87460788 - MIR SINE MIR -101 161 25 350 219 88 18 chr1 155203776 155203890 -87460463 + MIR SINE MIR 104 225 -37 230 176 44 103 chr1 155204217 155204285 -87460068 + L2 LINE L2 3238 3301 -12 215 256 12 12 chr1 155204880 155204962 -87459391 + (TTTA)n Simple_repeat Simple_repeat 3 84 0 217 296 12 12 chr1 155205044 155205125 -87459228 + MIR3 SINE MIR 2 82 -126 1257 145 32 41 chr1 155207138 155207359 -87456994 + MER20 DNA MER1_type 1 219 0 418 259 55 16 chr1 155207372 155207510 -87456843 - MIR SINE MIR -73 135 16 2125 100 0 17 chr1 155207665 155207964 -87456389 - AluSx SINE Alu -7 305 12 196 353 47 0 chr1 155208255 155208340 -87456013 + L3 LINE CR1 1289 1377 -200 542 280 86 30 chr1 155208994 155209226 -87455127 + MIR SINE MIR 17 261 -1 298 274 67 22 chr1 155210543 155210678 -87453675 - MIR SINE MIR -13 249 109 476 262 90 0 chr1 155210980 155211102 -87453251 - MIR3 SINE MIR -33 175 43 249 33 0 0 chr1 155211197 155211227 -87453126 + (TAA)n Simple_repeat Simple_repeat 1 30 0 192 208 94 75 chr1 155213559 155213612 -87450741 + L2 LINE L2 3216 3269 -3 182 211 211 0 chr1 155213623 155213675 -87450678 - MIR SINE MIR -81 181 119 517 208 40 40 chr1 155213858 155214007 -87450346 + MER117 DNA MER1_type 2 150 -47 349 333 76 8 chr1 155214059 155214191 -87450162 - MIR3 SINE MIR -49 159 19 198 298 21 64 chr1 155214263 155214357 -87449996 + MIR SINE MIR 109 198 -64 664 213 20 27 chr1 155215416 155215566 -87448787 + L2 LINE L2 3165 3313 0 460 249 178 27 chr1 155215567 155215752 -87448601 - L3 LINE CR1 -246 1331 1119 265 274 10 69 chr1 155215750 155215852 -87448501 - MIR3 SINE MIR -15 193 98 * 609 262 55 62 chr1 155216043 155216299 -87448054 - L2 LINE L2 -1 3271 3018 256 300 218 0 chr1 155217563 155217673 -87446680 - MIR SINE MIR -81 181 48 354 242 105 32 chr1 155217824 155217948 -87446405 - L2 LINE L2 -9 3304 3172 261 259 30 104 chr1 155218197 155218332 -87446021 - MIR SINE MIR -17 245 121 218 306 171 0 chr1 155219322 155219433 -87444920 + L2 LINE L2 3179 3308 -5 916 210 55 15 chr1 155219660 155219860 -87444493 + MIR SINE MIR 5 212 -50 357 344 39 39 chr1 155220184 155220463 -87443890 - L2 LINE L2 -527 2787 2509 299 263 21 21 chr1 155220480 155220575 -87443778 - MIR SINE MIR -4 258 164 347 21 0 21 chr1 155222600 155222648 -87441705 - L1P LINE L1 -2438 3708 3662 276 287 0 75 chr1 155224238 155224321 -87440032 - MIR SINE MIR -160 102 25 1891 122 0 14 chr1 155224321 155224608 -87439745 - AluJo SINE Alu -18 294 12 268 326 71 35 chr1 155225049 155225190 -87439163 + MIR SINE MIR 5 150 -112 3248 11 0 0 chr1 155225538 155225900 -87438453 - L1PA3 LINE L1 -211 5944 5583 260 0 0 0 chr1 155225898 155225960 -87438393 + L1PA2 LINE L1 6113 6174 0 * 348 290 40 16 chr1 155226029 155226153 -87438200 + MIR3 SINE MIR 75 201 -7 251 314 50 21 chr1 155226215 155226355 -87437998 + MIR SINE MIR 69 212 -50 289 302 81 0 chr1 155227166 155227252 -87437101 + L1MEd LINE L1 95 187 -5932 370 278 119 75 chr1 155227259 155227486 -87436867 + L1MEd LINE L1 2454 2690 -3439 773 139 22 58 chr1 155227490 155227627 -87436726 + AluJ SINE Alu 2 133 -179 387 0 0 0 chr1 155229339 155229382 -87434971 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2096 84 15 0 chr1 155229382 155229655 -87434698 - AluSc SINE Alu -32 277 1 379 283 142 0 chr1 155231445 155231551 -87432802 + MIR3 SINE MIR 46 166 -42 439 279 75 31 chr1 155231948 155232109 -87432244 + MIR SINE MIR 2 169 -93 425 271 52 51 chr1 155233122 155233306 -87431047 + MIR SINE MIR 11 192 -63 227 249 158 28 chr1 155233995 155234141 -87430212 - MIR SINE MIR -57 205 38 880 187 7 0 chr1 155234860 155235010 -87429343 + AluJ SINE Alu 135 285 -27 21 0 0 0 chr1 155235021 155235042 -87429311 + AT_rich Low_complexity Low_complexity 1 21 0 378 305 168 0 chr1 155235042 155235224 -87429129 + MIR SINE MIR 19 233 -29 559 281 73 0 chr1 155235923 155236101 -87428252 + MIR SINE MIR 2 192 -70 606 341 68 85 chr1 155237398 155237811 -87426542 - L2 LINE L2 0 3272 2867 1606 138 23 4 chr1 155237832 155238092 -87426261 - AluSx SINE Alu -8 304 40 1195 327 187 20 chr1 155238092 155238995 -87425358 - L2 LINE L2 -525 2789 1736 228 323 106 31 chr1 155239436 155239662 -87424691 + L2 LINE L2 2819 3061 -211 31 58 0 0 chr1 155242952 155243004 -87421349 + GC_rich Low_complexity Low_complexity 1 52 0 205 256 0 33 chr1 155243304 155243394 -87420959 + (CGG)n Simple_repeat Simple_repeat 2 88 0 186 43 0 0 chr1 155243395 155243418 -87420935 + (CCG)n Simple_repeat Simple_repeat 3 25 0 203 133 0 0 chr1 155243492 155243522 -87420831 + (CGG)n Simple_repeat Simple_repeat 2 31 0 289 318 198 0 chr1 155244649 155244775 -87419578 - L2 LINE L2 -5 3267 3117 2126 153 27 5 chr1 155245181 155245553 -87418800 - L1MD3 LINE L1 -170 7825 7446 1120 126 27 11 chr1 155245558 155245741 -87418612 - L1PA15 LINE L1 -6 6159 5974 260 325 188 0 chr1 155247040 155247157 -87417196 + L2 LINE L2 3133 3271 -1 245 312 55 37 chr1 155247801 155247910 -87416443 + L3b LINE CR1 1389 1499 -84 219 310 151 35 chr1 155248337 155248734 -87415619 + L2 LINE L2 2063 2505 -809 392 248 143 0 chr1 155249035 155249168 -87415185 - MIR SINE MIR -60 202 51 275 225 28 28 chr1 155249585 155249656 -87414697 + CT-rich Low_complexity Low_complexity 1 71 0 204 261 0 0 chr1 155249853 155249899 -87414454 + L2 LINE L2 3244 3289 -24 479 270 158 26 chr1 155249952 155250104 -87414249 - MER5A DNA MER1_type 0 189 18 204 250 0 67 chr1 155250081 155250141 -87414212 + MER5A DNA MER1_type 9 64 -125 * 501 300 109 35 chr1 155250282 155250512 -87413841 + MIR SINE MIR 9 255 -7 22 88 0 0 chr1 155251166 155251223 -87413130 + AT_rich Low_complexity Low_complexity 1 57 0 267 79 0 0 chr1 155251398 155251436 -87412917 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 276 289 67 22 chr1 155251437 155251527 -87412826 - L2 LINE L2 -21 3251 3158 531 262 35 7 chr1 155251667 155251808 -87412545 + L2 LINE L2 3169 3313 0 1521 193 96 17 chr1 155252268 155252687 -87411666 + MLT1C LTR MaLR 10 461 -6 649 314 30 79 chr1 155252926 155253579 -87410774 + L2 LINE L2 2550 3158 -155 2218 111 0 10 chr1 155253579 155253877 -87410476 - AluSq SINE Alu -18 295 1 649 314 30 79 chr1 155253877 155254026 -87410327 + L2 LINE L2 3158 3313 0 208 295 49 0 chr1 155255094 155255155 -87409198 + MIR SINE MIR 75 138 -70 1782 183 0 13 chr1 155256400 155256701 -87407652 - AluJo SINE Alu -13 299 3 512 278 31 11 chr1 155256975 155257166 -87407187 - L1MEc LINE L1 -6165 231 37 191 322 17 17 chr1 155258256 155258315 -87406038 + L2 LINE L2 3209 3267 -5 691 313 50 23 chr1 155258586 155258848 -87405505 + LTR67 LTR ERVL 30 298 -259 633 277 32 5 chr1 155258874 155259062 -87405291 + LTR67 LTR ERVL 363 555 -2 183 241 96 0 chr1 155259304 155259387 -87404966 + L2 LINE L2 2401 2491 -823 577 295 78 94 chr1 155259610 155260057 -87404296 + L2 LINE L2 2809 3248 -24 188 253 241 11 chr1 155260951 155261038 -87403315 + MIR SINE MIR 47 153 -109 1229 201 70 23 chr1 155261104 155261485 -87402868 - MLT1C LTR MaLR -3 464 1 837 225 76 32 chr1 155262286 155262544 -87401809 + MLT1H LTR MaLR 217 493 -56 189 0 0 0 chr1 155262544 155262565 -87401788 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 837 225 76 32 chr1 155262565 155262621 -87401732 + MLT1H LTR MaLR 493 545 -4 263 247 14 0 chr1 155262845 155262918 -87401435 - MLT1J2 LTR MaLR -27 423 350 488 219 10 0 chr1 155262961 155263057 -87401296 - MLT1H LTR MaLR -195 354 258 1151 179 29 89 chr1 155263100 155263245 -87401108 + MLT2B1 LTR ERVL 1 118 -402 1931 160 7 0 chr1 155263245 155263545 -87400808 + AluJb SINE Alu 1 302 -10 1151 179 29 89 chr1 155263545 155263712 -87400641 + MLT2B1 LTR ERVL 118 294 -226 868 114 60 0 chr1 155263714 155263863 -87400490 + L1P5 LINE L1 5644 5801 -350 210 154 0 0 chr1 155263886 155263925 -87400428 + (TA)n Simple_repeat Simple_repeat 1 39 0 332 300 0 0 chr1 155263925 155264015 -87400338 - L1MC4 LINE L1 -1339 6703 6614 2539 103 0 5 chr1 155264033 155264401 -87399952 + L1PB1 LINE L1 5785 6150 -1 412 265 100 79 chr1 155265060 155265479 -87398874 - MLT1H LTR MaLR -4 545 118 312 243 17 67 chr1 155266109 155266259 -87398094 + MLT1H LTR MaLR 1 192 -357 351 255 90 28 chr1 155266474 155266619 -87397734 + MLT1H LTR MaLR 396 549 0 314 318 104 0 chr1 155267474 155267628 -87396725 - MIR3 SINE MIR -3 205 36 256 163 0 0 chr1 155267886 155267929 -87396424 - L2 LINE L2 0 3313 3271 976 240 47 65 chr1 155268167 155268505 -87395848 - MER102b DNA MER1_type -1 340 9 1822 151 4 11 chr1 155268840 155269119 -87395234 + AluJb SINE Alu 9 285 -27 343 102 71 10 chr1 155269119 155269217 -87395136 + (TA)n Simple_repeat Simple_repeat 1 104 0 618 320 152 33 chr1 155269426 155269820 -87394533 - L2 LINE L2 0 3313 2873 216 327 126 27 chr1 155270066 155270289 -87394064 - L2 LINE L2 -694 2620 2376 363 305 53 0 chr1 155270760 155270855 -87393498 - L2 LINE L2 -2 3270 3171 2202 64 0 0 chr1 155270970 155271250 -87393103 + L1PA8 LINE L1 5887 6166 -6 1704 158 0 0 chr1 155271279 155271538 -87392815 + AluJb SINE Alu 36 294 -18 2354 69 23 3 chr1 155271635 155271940 -87392413 + AluY SINE Alu 1 311 0 213 284 12 74 chr1 155272300 155272381 -87391972 + MIR SINE MIR 114 189 -73 710 287 17 0 chr1 155272515 155272696 -87391657 + MIR SINE MIR 60 243 -19 486 61 0 0 chr1 155273032 155273098 -87391255 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 200 357 75 30 chr1 155273126 155273325 -87391028 + L2 LINE L2 1750 1957 -1357 364 265 235 7 chr1 155274037 155274173 -87390180 + MIR3 SINE MIR 15 181 -27 23 0 0 0 chr1 155274828 155274851 -87389502 + AT_rich Low_complexity Low_complexity 1 23 0 611 262 99 50 chr1 155274870 155274925 -87389428 + HAL1 LINE L1 1402 1453 -1054 578 161 193 19 chr1 155274925 155275086 -87389267 - MER53 DNA DNA 0 189 1 611 262 99 50 chr1 155275086 155275373 -87388980 + HAL1 LINE L1 1453 1761 -746 366 265 155 30 chr1 155275453 155275804 -87388549 - MLT1L LTR MaLR -14 574 171 651 309 43 16 chr1 155275809 155276065 -87388288 - L2 LINE L2 -23 3290 3028 326 269 21 35 chr1 155276178 155276323 -87388030 + HAL1 LINE L1 2011 2153 -354 237 236 76 49 chr1 155276737 155276881 -87387472 + HAL1 LINE L1 2355 2502 -5 205 224 172 0 chr1 155277249 155277307 -87387046 - MIR SINE MIR -78 130 63 301 315 46 30 chr1 155277397 155277594 -87386759 + L2 LINE L2 2817 3016 -256 982 268 12 16 chr1 155277702 155277956 -87386397 + MIR SINE MIR 10 262 0 1192 240 116 102 chr1 155279617 155280187 -87384166 + MLT1K LTR MaLR 5 582 -6 182 303 174 28 chr1 155280449 155280558 -87383795 - L2 LINE L2 -1 3271 3147 182 269 130 46 chr1 155281008 155281116 -87383237 - MIR SINE MIR -58 150 34 258 301 83 88 chr1 155281335 155281551 -87382802 + L2 LINE L2 2763 2977 -337 208 278 9 65 chr1 155281876 155281984 -87382369 + L2 LINE L2 2903 3004 -268 252 229 0 29 chr1 155282062 155282132 -87382221 + (CTATT)n Simple_repeat Simple_repeat 3 70 0 568 350 21 58 chr1 155282208 155282499 -87381854 + L2 LINE L2 2985 3264 -8 1817 174 0 7 chr1 155282621 155282926 -87381427 + AluJb SINE Alu 1 303 -9 188 65 0 32 chr1 155283409 155283440 -87380913 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 1327 127 4 83 chr1 155283764 155283992 -87380361 - AluJo SINE Alu -16 296 87 720 224 11 52 chr1 155284751 155284925 -87379428 - MIR SINE MIR -40 222 56 241 221 73 0 chr1 155285285 155285353 -87379000 - L1P2 LINE L1 -319 5835 5763 3560 164 7 37 chr1 155285489 155286143 -87378210 - L1MB7 LINE L1 -66 6118 5487 2209 100 3 27 chr1 155286143 155286444 -87377909 - AluSx SINE Alu -18 294 1 3560 164 7 37 chr1 155286444 155286526 -87377827 - L1MB7 LINE L1 -697 5487 5404 1601 185 68 7 chr1 155286528 155286956 -87377397 - L1MB7 LINE L1 -2191 3955 3502 1821 103 28 7 chr1 155286956 155287238 -87377115 + MLT2A1 LTR ERVL 1 288 -156 22879 42 2 0 chr1 155287917 155291522 -87372831 - L1PA3 LINE L1 -8 6147 2535 579 275 94 29 chr1 155291526 155292002 -87372351 - L1MEc LINE L1 -4013 2550 2044 532 290 30 5 chr1 155292304 155292504 -87371849 - L1MEc LINE L1 -4537 1847 1643 10194 174 22 19 chr1 155292528 155294411 -87369942 - L1PB4 LINE L1 -9 6849 4952 2158 129 0 0 chr1 155294411 155294721 -87369632 - AluSx SINE Alu -2 310 1 10194 174 22 19 chr1 155294721 155296072 -87368281 - L1PB4 LINE L1 -1906 4952 3607 1232 115 5 0 chr1 155296068 155296260 -87368093 + L1MA2 LINE L1 6112 6304 0 4430 216 39 6 chr1 155296304 155297529 -87366824 - L1PB4 LINE L1 -3972 2877 1612 5639 117 10 6 chr1 155297548 155299124 -87365229 - L1PA15 LINE L1 -4 7599 6019 727 153 0 0 chr1 155299124 155299241 -87365112 + L1MA1 LINE L1 6185 6302 0 9795 209 17 10 chr1 155299251 155299815 -87364538 - L1PA15 LINE L1 -1547 6037 5479 276 100 0 0 chr1 155299815 155299855 -87364498 + (TG)n Simple_repeat Simple_repeat 2 41 0 9795 209 17 10 chr1 155299855 155301651 -87362702 - L1PA15 LINE L1 -2105 5479 3659 1684 171 6 4 chr1 155301659 155302075 -87362278 - L1PA15 LINE L1 -4391 3193 2778 7551 30 0 0 chr1 155302090 155303150 -87361203 - L1PA3 LINE L1 0 6155 5102 8536 37 0 0 chr1 155303152 155304230 -87360123 + L1P LINE L1 3286 4363 -1783 21131 171 17 16 chr1 155304290 155310009 -87354344 - L1PA11 LINE L1 0 7612 1099 1724 180 0 0 chr1 155310008 155310331 -87354022 + L1P LINE L1 2503 2825 -3321 * 4581 206 36 20 chr1 155310320 155311367 -87352986 - L1PA11 LINE L1 -6511 1070 7 1682 207 39 0 chr1 155311375 155311791 -87352562 - L1PA13 LINE L1 -4824 2750 2319 341 359 14 39 chr1 155312382 155312741 -87351612 - L1PA13 LINE L1 -7231 350 1 2077 253 16 11 chr1 155312742 155313288 -87351065 - L1M2 LINE L1 -5231 1618 1070 355 335 93 46 chr1 155313689 155313883 -87350470 - L1M2 LINE L1 -6062 787 585 335 333 8 54 chr1 155313941 155314070 -87350283 - L1M2 LINE L1 -6062 787 665 1060 314 41 9 chr1 155314168 155314604 -87349749 - L1M2 LINE L1 -6399 450 1 * 1794 226 47 23 chr1 155314603 155315205 -87349148 - L1M4b LINE L1 -4728 2231 1616 * 4958 162 54 8 chr1 155315201 155316221 -87348132 - L1MC1 LINE L1 0 6333 5267 3245 29 0 0 chr1 155316257 155316640 -87347713 - L1PA4 LINE L1 -3 6152 5770 846 71 0 14 chr1 155316640 155316655 -87347698 - L1P LINE L1 -2886 3260 3246 17860 38 2 0 chr1 155316655 155319605 -87344748 - L1PA3 LINE L1 -2 6153 3199 846 71 0 14 chr1 155319605 155319730 -87344623 - L1P LINE L1 -2900 3246 3122 40853 33 21 1 chr1 155319734 155325765 -87338588 - L1HS LINE L1 0 6155 2 24220 51 0 2 chr1 155325759 155328909 -87335444 - L1PA3 LINE L1 -3001 3145 1 * 2081 134 7 0 chr1 155328911 155329210 -87335143 - AluSg SINE Alu -9 301 1 4083 228 63 68 chr1 155329211 155329347 -87335006 - L1M4b LINE L1 -5229 1630 1495 2160 163 3 0 chr1 155329347 155329709 -87334644 + MER47A DNA MER2_type 1 363 -3 4083 228 63 68 chr1 155329709 155330935 -87333418 - L1M4b LINE L1 -5364 1495 275 286 304 10 10 chr1 155331002 155331104 -87333249 - L1M4b LINE L1 -6591 268 167 417 313 48 27 chr1 155331435 155331582 -87332771 + L2 LINE L2 2910 3059 -254 714 287 12 12 chr1 155331582 155331826 -87332527 - LTR16B LTR ERVL 0 464 221 6090 228 31 95 chr1 155331874 155332083 -87332270 - L1M4c LINE L1 -4161 3007 2786 387 56 0 0 chr1 155332083 155332137 -87332216 + (TA)n Simple_repeat Simple_repeat 2 55 0 6090 228 31 95 chr1 155332137 155335386 -87328967 - L1M4c LINE L1 -4382 2786 7 373 302 48 55 chr1 155335386 155335661 -87328692 - L1M4 LINE L1 -1574 4572 4303 447 307 69 42 chr1 155335849 155336472 -87327881 - L1M4 LINE L1 -1828 4318 3679 732 330 84 66 chr1 155336566 155337789 -87326564 - L1M4 LINE L1 -2582 3564 2320 2119 127 14 0 chr1 155337895 155338179 -87326174 - AluSx SINE Alu -24 288 1 1164 205 45 61 chr1 155338286 155338654 -87325699 + L1MD3 LINE L1 7044 7623 -372 2090 103 57 4 chr1 155338768 155339049 -87325304 - AluSg SINE Alu -14 296 1 1528 134 90 30 chr1 155339304 155339599 -87324754 + AluJo SINE Alu 1 311 0 3585 184 74 29 chr1 155339605 155340637 -87323716 - L1MB8 LINE L1 -6 6172 5074 1805 178 0 28 chr1 155340637 155340958 -87323395 + AluJb SINE Alu 1 312 0 3585 184 74 29 chr1 155340958 155341109 -87323244 - L1MB8 LINE L1 -1104 5074 4931 278 298 45 22 chr1 155341258 155341436 -87322917 - HAL1 LINE L1 -962 1545 1364 4266 30 0 0 chr1 155342304 155342841 -87321512 - L1PA3 LINE L1 -3394 2752 2216 21752 31 0 1 chr1 155342841 155346248 -87318105 + L1PA3 LINE L1 2753 6155 0 276 302 69 48 chr1 155346343 155346532 -87317821 + L2 LINE L2 3121 3313 0 229 25 0 50 chr1 155346816 155346856 -87317497 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2170 164 16 19 chr1 155347498 155347864 -87316489 - MLT1A1 LTR MaLR 0 365 1 394 238 152 52 chr1 155347917 155348127 -87316226 - L2 LINE L2 -80 3233 3003 1685 210 0 6 chr1 155348289 155348603 -87315750 + AluJo SINE Alu 1 312 0 332 301 44 9 chr1 155348625 155348738 -87315615 + MER20 DNA MER1_type 103 219 0 375 261 35 25 chr1 155348764 155348992 -87315361 - MLT1K LTR MaLR -280 308 5 192 322 87 47 chr1 155348999 155349148 -87315205 - L2 LINE L2 -447 2867 2713 210 321 73 53 chr1 155349560 155349862 -87314491 - L3 LINE CR1 -877 700 393 2962 159 37 59 chr1 155349926 155350554 -87313799 - L1MB2 LINE L1 -8 6163 5550 5001 106 1 1 chr1 155350567 155351229 -87313124 - L1PA13 LINE L1 -19 6144 5483 9370 143 24 5 chr1 155353399 155355127 -87309226 - L1PA13 LINE L1 -651 5523 3765 1859 163 2 32 chr1 155355121 155355558 -87308795 - L1MB2 LINE L1 -619 5564 5141 * 340 288 88 0 chr1 155355847 155355972 -87308381 - MIR SINE MIR -51 211 76 341 288 13 28 chr1 155356150 155356290 -87308063 - MIR SINE MIR -38 170 31 675 266 28 23 chr1 155356459 155356678 -87307675 + MIR SINE MIR 44 262 0 2538 71 0 0 chr1 155356791 155357102 -87307251 + AluY SINE Alu 1 311 0 1300 273 44 63 chr1 155357158 155357679 -87306674 - MLT1J LTR MaLR 0 511 1 188 230 243 27 chr1 155358364 155358438 -87305915 + L2 LINE L2 3173 3262 -10 432 229 51 57 chr1 155359373 155359530 -87304823 + MER5A DNA MER1_type 12 167 -22 313 312 0 13 chr1 155360171 155360248 -87304105 - L2 LINE L2 -21 3251 3176 22 0 0 0 chr1 155360286 155360308 -87304045 + AT_rich Low_complexity Low_complexity 1 22 0 229 304 39 20 chr1 155360424 155360526 -87303827 - MIR3 SINE MIR -7 201 98 234 306 14 0 chr1 155360633 155360705 -87303648 - MIR3 SINE MIR -17 191 119 1090 305 91 11 chr1 155360971 155361433 -87302920 - MLT1L LTR MaLR 0 615 117 356 233 124 143 chr1 155361623 155361881 -87302472 + MIR SINE MIR 6 258 -4 453 97 0 0 chr1 155363799 155363871 -87300482 + (TC)n Simple_repeat Simple_repeat 1 72 0 504 232 56 16 chr1 155364128 155364253 -87300100 - Charlie8 DNA MER1_type -2142 275 146 247 231 0 0 chr1 155364309 155364361 -87299992 - Charlie8 DNA MER1_type -2290 127 76 594 265 69 15 chr1 155364714 155364918 -87299435 + MIR SINE MIR 46 260 -2 764 192 9 2 chr1 155364948 155365161 -87299192 + MER46C DNA MER2_type 79 328 -10 251 237 43 11 chr1 155365284 155365377 -87298976 - L2 LINE L2 -224 3048 2953 248 276 105 0 chr1 155365836 155365912 -87298441 - L2 LINE L2 -578 2736 2653 494 337 49 5 chr1 155366825 155367030 -87297323 - MIR SINE MIR -28 234 21 583 181 24 39 chr1 155368284 155368411 -87295942 + L1MB5 LINE L1 6050 6174 0 220 267 267 20 chr1 155369085 155369235 -87295118 - MIR3 SINE MIR -10 198 12 * 349 254 26 35 chr1 155369206 155369320 -87295033 + MIR SINE MIR 65 177 -85 2891 90 34 3 chr1 155369439 155369826 -87294527 + L1PA10 LINE L1 5766 6164 -4 503 244 15 0 chr1 155370178 155370313 -87294040 + MER69 DNA AcHobo 2390 2526 0 22 0 0 0 chr1 155370731 155370753 -87293600 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr1 155372130 155372154 -87292199 + (T)n Simple_repeat Simple_repeat 1 24 0 2258 72 0 23 chr1 155372879 155373185 -87291168 - AluY SINE Alu -12 299 1 613 308 106 12 chr1 155373428 155373750 -87290603 + L1MEd LINE L1 46 397 -5722 318 349 33 33 chr1 155373932 155374173 -87290180 + L1MEd LINE L1 597 837 -5282 636 272 127 0 chr1 155374175 155374388 -87289965 - MIR SINE MIR -9 253 14 518 258 115 36 chr1 155374388 155374640 -87289713 + MLT1J LTR MaLR 1 272 -239 1289 203 54 0 chr1 155374737 155375013 -87289340 - AluJo SINE Alu -19 293 3 262 276 43 69 chr1 155375119 155375235 -87289118 + MLT1J LTR MaLR 342 454 -57 240 333 0 0 chr1 155375290 155375362 -87288991 - tRNA-Gly-GGA tRNA tRNA -3 72 1 1961 176 6 3 chr1 155376023 155376380 -87287973 + L1 LINE L1 3927 4284 -1862 2144 113 3 0 chr1 155377281 155377563 -87286790 + AluSq SINE Alu 3 285 -28 2009 124 3 14 chr1 155377835 155378125 -87286228 + AluSg SINE Alu 3 289 -21 1377 185 62 0 chr1 155378576 155378819 -87285534 - AluJb SINE Alu -46 266 9 21 36 0 0 chr1 155379027 155379055 -87285298 + AT_rich Low_complexity Low_complexity 1 28 0 378 240 71 31 chr1 155379059 155379255 -87285098 + HAL1b LINE L1 647 850 -498 235 299 65 19 chr1 155380020 155380127 -87284226 + MER5A DNA MER1_type 76 187 -2 * 407 277 30 0 chr1 155380034 155380135 -87284218 - MER5A DNA MER1_type -77 112 9 588 261 8 72 chr1 155380136 155380385 -87283968 + L1M4 LINE L1 5391 5623 -555 339 213 46 19 chr1 155380533 155380641 -87283712 + MIR SINE MIR 100 210 -52 402 264 47 27 chr1 155380984 155381132 -87283221 + MIR SINE MIR 92 242 -20 1308 135 0 5 chr1 155381210 155381402 -87282951 + AluSx SINE Alu 3 193 -119 325 176 0 0 chr1 155381402 155381453 -87282900 + AluS SINE Alu 20 70 -233 17606 75 1 2 chr1 155381553 155383878 -87280475 + L1P LINE L1 782 3103 -3043 419 122 256 0 chr1 155384695 155384777 -87279576 - ORSL DNA AcHobo 0 275 173 1857 125 4 0 chr1 155384777 155385057 -87279296 + L1MA4 LINE L1 6014 6294 -6 625 165 152 6 chr1 155385115 155385279 -87279074 - ORSL DNA AcHobo -87 188 1 449 266 48 43 chr1 155388842 155389030 -87275323 + MER90 LTR ERV1 425 613 -1 208 321 0 0 chr1 155389045 155389101 -87275252 + MIR SINE MIR 156 211 -51 290 340 53 40 chr1 155389129 155389279 -87275074 + L2 LINE L2 3116 3267 -5 3245 219 31 30 chr1 155390667 155391547 -87272806 - L1MB8 LINE L1 0 6178 5298 328 295 121 82 chr1 155391668 155391766 -87272587 + HAL1 LINE L1 3 96 -2411 2220 82 44 0 chr1 155391766 155392059 -87272294 + AluY SINE Alu 2 307 -4 328 295 121 82 chr1 155392059 155392374 -87271979 + HAL1 LINE L1 96 432 -2075 228 67 0 0 chr1 155393183 155393213 -87271140 + (A)n Simple_repeat Simple_repeat 1 30 0 215 208 104 0 chr1 155393338 155393386 -87270967 - L2 LINE L2 0 3313 3261 28 29 0 0 chr1 155393917 155393952 -87270401 + AT_rich Low_complexity Low_complexity 1 35 0 363 231 67 10 chr1 155393996 155394100 -87270253 + MLT1I LTR MaLR 12 121 -288 955 231 12 31 chr1 155394479 155394734 -87269619 - MIR SINE MIR -1 261 12 338 314 35 21 chr1 155394946 155395229 -87269124 - L1M4 LINE L1 -2194 3952 3666 222 62 0 0 chr1 155395503 155395535 -87268818 + (TG)n Simple_repeat Simple_repeat 2 33 0 289 248 16 93 chr1 155395685 155395814 -87268539 - MER94 DNA DNA -15 119 1 462 379 70 32 chr1 155395896 155396239 -87268114 - L2 LINE L2 0 3272 2917 2376 48 14 3 chr1 155396320 155396609 -87267744 + AluY SINE Alu 2 293 -18 392 33 98 16 chr1 155396804 155396865 -87267488 - L1MC1 LINE L1 0 6333 6268 514 188 59 10 chr1 155396865 155396966 -87267387 + MER44D DNA MER2_type 4 379 -230 227 196 0 22 chr1 155398098 155398144 -87266209 + GA-rich Low_complexity Low_complexity 1 45 0 314 146 0 0 chr1 155399189 155399237 -87265116 - MLT1I LTR MaLR 0 409 362 16234 52 2 0 chr1 155399337 155401502 -87262851 + L1P LINE L1 1380 3549 -2597 20310 114 11 13 chr1 155401602 155405279 -87259074 - L1P3 LINE L1 -2035 4426 744 467 45 0 15 chr1 155405379 155405445 -87258908 + L1PA8 LINE L1 5439 5503 -669 * 10506 40 0 4 chr1 155405424 155406811 -87257542 - L1PA4 LINE L1 -2483 3663 2282 13533 42 17 0 chr1 155406811 155409260 -87255093 + L1PA4 LINE L1 3667 6149 -6 5478 63 0 0 chr1 155409263 155409961 -87254392 + L1PA8 LINE L1 5475 6172 0 2810 159 6 6 chr1 155409961 155410490 -87253863 + L1MA6 LINE L1 5769 6297 -3 496 179 9 57 chr1 155410510 155410616 -87253737 - MER5A DNA MER1_type -80 109 9 1979 166 0 3 chr1 155410650 155410963 -87253390 - AluJo SINE Alu 0 312 1 1353 192 3 52 chr1 155411042 155411333 -87253020 + AluJo SINE Alu 24 300 -12 1676 148 7 7 chr1 155411481 155411751 -87252602 - AluJb SINE Alu -16 296 27 5233 101 5 26 chr1 155411851 155412719 -87251634 - L1P LINE L1 -843 5303 4455 699 94 19 0 chr1 155412718 155412824 -87251529 - L1M2 LINE L1 -530 5761 5654 * 2000 133 28 28 chr1 155412824 155413176 -87251177 - THE1B LTR MaLR -12 352 1 2362 130 2 8 chr1 155413176 155413615 -87250738 - L1M2 LINE L1 -650 5650 5214 1062 141 54 0 chr1 155413621 155413805 -87250548 + MSTA LTR MaLR 235 428 0 5618 176 29 19 chr1 155413805 155415066 -87249287 - L1M2 LINE L1 -1475 4671 3398 3209 209 37 6 chr1 155415069 155415884 -87248469 + L1 LINE L1 2435 3274 -2872 * 5978 25 4 0 chr1 155415881 155416616 -87247737 - L1PA3 LINE L1 -1354 4792 4055 6693 100 2 32 chr1 155416616 155417993 -87246360 + L1PA3 LINE L1 4802 6152 -3 835 121 0 7 chr1 155418000 155418149 -87246204 + L1 LINE L1 3259 3406 -2740 719 155 0 0 chr1 155418195 155418324 -87246029 - L1MA3 LINE L1 0 6305 6177 3851 92 12 23 chr1 155418325 155418900 -87245453 - L1PA13 LINE L1 -2 6161 5593 548 78 0 0 chr1 155418900 155418975 -87245378 - L1PA5 LINE L1 0 6154 6078 1106 90 0 0 chr1 155418976 155419131 -87245222 - L1PA13 LINE L1 -544 5619 5465 622 272 148 60 chr1 155419766 155420130 -87244223 + L2 LINE L2 2914 3309 -4 267 140 0 0 chr1 155420130 155420180 -87244173 + (AATTG)n Simple_repeat Simple_repeat 3 52 0 2462 239 114 31 chr1 155420234 155421169 -87243184 + L2 LINE L2 1642 2654 -660 470 199 0 110 chr1 155421449 155421640 -87242713 + LTR12 LTR ERV1 283 452 -262 882 263 91 43 chr1 155421689 155422307 -87242046 + L2 LINE L2 2657 3312 -1 381 272 35 26 chr1 155422446 155422560 -87241793 + MIR3 SINE MIR 91 205 -3 252 345 0 0 chr1 155422628 155422715 -87241638 - L2 LINE L2 0 3272 3186 235 373 111 28 chr1 155423744 155424133 -87240220 - L2 LINE L2 -2 3311 2891 254 330 64 0 chr1 155424225 155424319 -87240034 - L2 LINE L2 -527 2787 2688 479 270 14 34 chr1 155424806 155424954 -87239399 - MIR3 SINE MIR -3 205 61 298 309 158 27 chr1 155424928 155425226 -87239127 - L2 LINE L2 -905 2409 2073 * 248 297 242 23 chr1 155425218 155425346 -87239007 + MIR SINE MIR 96 251 -11 * 184 331 57 25 chr1 155425362 155425519 -87238834 - L2 LINE L2 -1189 2125 1964 342 236 325 0 chr1 155425708 155425865 -87238488 - MLT1E1 LTR MaLR -393 261 54 369 259 222 5 chr1 155426197 155426413 -87237940 - L2 LINE L2 -473 2841 2579 2444 77 0 6 chr1 155426739 155427050 -87237303 + AluSg SINE Alu 1 309 -1 609 335 69 42 chr1 155427060 155427117 -87237236 + L2 LINE L2 2992 3046 -226 1875 201 68 27 chr1 155427117 155427600 -87236753 + MLT1D LTR MaLR 1 503 -2 609 335 69 42 chr1 155427600 155427802 -87236551 + L2 LINE L2 3046 3258 -14 1260 182 83 4 chr1 155427943 155428207 -87236146 - MSTB LTR MaLR 0 426 142 3192 180 47 43 chr1 155428315 155429146 -87235207 + L1MCa LINE L1 1169 1995 -4431 2463 73 0 10 chr1 155429146 155429459 -87234894 - AluY SINE Alu -1 310 1 3192 180 47 43 chr1 155429459 155430582 -87233771 + L1MCa LINE L1 1995 3214 -3212 2145 88 4 4 chr1 155430584 155430858 -87233495 + AluY SINE Alu 1 274 -37 180 367 83 8 chr1 155430900 155431020 -87233333 - MIR SINE MIR -74 188 60 1210 26 13 33 chr1 155432906 155433058 -87231295 + AluY SINE Alu 143 291 -20 368 333 29 23 chr1 155433532 155433706 -87230647 + MIR3 SINE MIR 33 207 -1 215 213 21 0 chr1 155433899 155433946 -87230407 + L2 LINE L2 3264 3311 -2 3576 140 2 6 chr1 155435197 155435726 -87228627 + MER1A DNA MER1_type 1 527 0 192 204 136 0 chr1 155435877 155435921 -87228432 - L3b LINE CR1 -6 1577 1528 560 227 43 76 chr1 155435953 155436138 -87228215 + MER5A DNA MER1_type 11 189 0 531 323 71 15 chr1 155436139 155436405 -87227948 - L3 LINE CR1 -80 1497 1217 43 0 0 0 chr1 155436571 155436614 -87227739 + AT_rich Low_complexity Low_complexity 1 43 0 355 323 181 7 chr1 155437554 155437709 -87226644 + L3 LINE CR1 1389 1570 -7 205 328 0 0 chr1 155437744 155437805 -87226548 - MIR SINE MIR -21 241 181 23 0 0 0 chr1 155438090 155438113 -87226240 + AT_rich Low_complexity Low_complexity 1 23 0 912 166 10 10 chr1 155438153 155438346 -87226007 + L1MA6 LINE L1 6108 6300 0 199 351 69 8 chr1 155438568 155438699 -87225654 + MIR SINE MIR 113 251 -11 1943 100 147 22 chr1 155438958 155439278 -87225075 + THE1B LTR MaLR 1 360 -4 10855 90 12 2 chr1 155439282 155440786 -87223567 + THE1B-int LTR MaLR 1 1519 -61 412 188 47 0 chr1 155440786 155440871 -87223482 + THE1B LTR MaLR 276 364 0 219 321 90 37 chr1 155441079 155441213 -87223140 + L2 LINE L2 3115 3255 -17 183 80 0 0 chr1 155441218 155441243 -87223110 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1432 192 47 0 chr1 155441810 155442128 -87222225 - MER63B DNA MER1_type -101 335 3 242 368 48 8 chr1 155443938 155444063 -87220290 + L2 LINE L2 2717 2846 -468 805 282 41 0 chr1 155444090 155444310 -87220043 - MIR SINE MIR -22 240 12 199 290 140 38 chr1 155444290 155444476 -87219877 + L2 LINE L2 2860 3064 -208 * 321 350 0 14 chr1 155444813 155444956 -87219397 + MIR SINE MIR 14 154 -108 1247 294 70 59 chr1 155445021 155445658 -87218695 + L2 LINE L2 2389 3035 -278 195 186 0 0 chr1 155445695 155445738 -87218615 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 333 43 0 chr1 155445738 155445876 -87218477 + L2 LINE L2 3170 3313 0 324 280 59 34 chr1 155445934 155446052 -87218301 - L2 LINE L2 0 3313 3193 263 316 31 10 chr1 155446212 155446310 -87218043 + MIR SINE MIR 46 145 -63 3660 253 69 32 chr1 155446321 155448176 -87216177 + L1M4c LINE L1 9 1492 -4480 21 36 0 0 chr1 155448178 155448206 -87216147 + AT_rich Low_complexity Low_complexity 1 28 0 459 0 37 105 chr1 155448212 155448403 -87215950 + (TA)n Simple_repeat Simple_repeat 1 178 0 365 91 52 53 chr1 155448385 155448895 -87215458 + (CTATA)n Simple_repeat Simple_repeat 1 509 0 * 6391 230 34 8 chr1 155448912 155450965 -87213388 + L1M4c LINE L1 1613 3722 -2248 1883 156 20 12 chr1 155450960 155451727 -87212626 + L1M2 LINE L1 4875 5681 -610 * 2198 67 25 28 chr1 155451833 155452116 -87212237 - AluY SINE Alu -29 282 1 2541 208 53 35 chr1 155452282 155452889 -87211464 - MLT1E2 LTR MaLR -8 618 1 863 274 54 35 chr1 155453132 155453449 -87210904 - L2 LINE L2 0 3313 2991 870 310 133 8 chr1 155453528 155453896 -87210457 - L2 LINE L2 -1110 2204 1791 1783 155 32 59 chr1 155453997 155454043 -87210310 + L1MA6 LINE L1 5740 5786 -514 2092 144 0 0 chr1 155454043 155454335 -87210018 + AluSq SINE Alu 1 292 -21 1783 155 32 59 chr1 155454335 155454694 -87209659 + L1MA6 LINE L1 5786 6134 -166 25 0 0 0 chr1 155454700 155454725 -87209628 + AT_rich Low_complexity Low_complexity 1 25 0 518 282 129 6 chr1 155454756 155454926 -87209427 + MIR SINE MIR 2 192 -70 2160 183 55 2 chr1 155454931 155455331 -87209022 + MSTB LTR MaLR 1 421 -5 334 234 0 0 chr1 155455333 155455397 -87208956 + MIR SINE MIR 196 259 -3 1327 267 46 44 chr1 155455399 155455990 -87208363 - MLT1G1 LTR MaLR -3 592 1 396 250 86 36 chr1 155456109 155456243 -87208110 - MIR3 SINE MIR -38 170 58 225 340 30 0 chr1 155457014 155457114 -87207239 - L3b LINE CR1 -189 1394 1292 283 297 218 0 chr1 155457212 155457313 -87207040 - L2 LINE L2 -1 3271 3149 279 107 24 48 chr1 155458046 155458130 -87206223 + (TA)n Simple_repeat Simple_repeat 2 83 0 421 89 0 0 chr1 155458131 155458187 -87206166 + MSTB LTR MaLR 317 372 -54 408 209 34 23 chr1 155458192 155458369 -87205984 + (TA)n Simple_repeat Simple_repeat 1 179 0 29 47 0 0 chr1 155458374 155458417 -87205936 + AT_rich Low_complexity Low_complexity 1 43 0 386 332 59 106 chr1 155458944 155459399 -87204954 - L2 LINE L2 -14 3258 2825 2021 137 151 0 chr1 155460058 155460430 -87203923 + MSTA LTR MaLR 1 428 0 378 355 42 6 chr1 155460441 155460607 -87203746 + MIR SINE MIR 47 218 -44 2128 113 0 0 chr1 155460966 155461271 -87203082 + AluY SINE Alu 1 305 0 801 277 23 23 chr1 155461848 155462068 -87202285 + MIR SINE MIR 2 221 -41 225 234 0 0 chr1 155463368 155463432 -87200921 + GA-rich Low_complexity Low_complexity 2 65 0 264 349 118 20 chr1 155463740 155463892 -87200461 + L3 LINE CR1 1411 1577 0 181 260 70 60 chr1 155463940 155464040 -87200313 - L2 LINE L2 -607 2707 2607 3084 162 23 27 chr1 155464807 155465363 -87198990 - MLT2B3 LTR ERVL 0 554 1 369 333 10 0 chr1 155465650 155465752 -87198601 - L2 LINE L2 -31 3241 3139 487 49 0 0 chr1 155466248 155466309 -87198044 + L1P4 LINE L1 5722 5782 -379 5512 111 26 31 chr1 155466309 155468110 -87196243 + L1PA15 LINE L1 4346 6158 -7 1316 171 92 46 chr1 155468213 155468539 -87195814 + MLT1A2 LTR MaLR 21 358 -16 243 155 84 42 chr1 155468553 155468624 -87195729 - MLT1I LTR MaLR -21 388 315 444 343 7 7 chr1 155469788 155469928 -87194425 - MIR3 SINE MIR -67 141 2 640 133 7 28 chr1 155470271 155470414 -87193939 + (TTC)n Simple_repeat Simple_repeat 1 140 0 16023 153 17 19 chr1 155470646 155472678 -87191675 + L1M1 LINE L1 2411 4445 -3279 1995 34 0 0 chr1 155472678 155472913 -87191440 + L1PA3 LINE L1 5921 6155 0 16023 153 17 19 chr1 155472913 155473797 -87190556 + L1M1 LINE L1 4445 5329 -2395 305 102 0 0 chr1 155473797 155473846 -87190507 + Alu SINE Alu 250 298 -2 16023 153 17 19 chr1 155473846 155475558 -87188795 + L1M1 LINE L1 5329 7076 -648 1836 233 67 55 chr1 155476434 155477026 -87187327 - L1ME3A LINE L1 0 6170 5451 1556 154 46 25 chr1 155477026 155477306 -87187047 - AluJo SINE Alu -24 288 3 1836 233 67 55 chr1 155477306 155477606 -87186747 - L1ME3A LINE L1 -719 5451 5156 380 284 37 25 chr1 155477760 155477922 -87186431 - MIR SINE MIR 0 262 99 238 330 9 9 chr1 155478115 155478221 -87186132 - LTR16A1 LTR ERVL -329 128 23 256 260 117 0 chr1 155478523 155478600 -87185753 - HERV16 LTR ERVL -4908 88 3 914 244 34 34 chr1 155478624 155478886 -87185467 - LTR16A LTR ERVL -67 383 122 401 241 0 53 chr1 155479150 155479283 -87185070 - MER104 DNA Tc2 -45 135 10 249 33 0 0 chr1 155479312 155479342 -87185011 + (CA)n Simple_repeat Simple_repeat 1 30 0 2855 29 0 3 chr1 155480512 155480852 -87183501 + L1PA4 LINE L1 5813 6151 -4 225 136 34 34 chr1 155480856 155480915 -87183438 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 736 273 130 4 chr1 155481075 155481306 -87183047 - MIR SINE MIR 0 262 3 859 148 8 0 chr1 155481576 155481704 -87182649 - FLAM_C SINE Alu -4 129 1 7227 48 1 0 chr1 155481941 155483581 -87180772 - L1PA5 LINE L1 -6 6148 4507 1962 123 0 25 chr1 155483642 155483927 -87180426 - AluSq SINE Alu -27 286 9 4023 123 7 0 chr1 155484375 155484958 -87179395 + L1P3 LINE L1 1 587 -5874 5130 91 25 29 chr1 155486427 155486866 -87177487 + Tigger1 DNA MER2_type 719 1155 -1263 2511 97 11 37 chr1 155486866 155487247 -87177106 + THE1C LTR MaLR 5 375 0 5130 91 25 29 chr1 155487247 155487600 -87176753 + Tigger1 DNA MER2_type 1155 1508 -910 592 281 50 34 chr1 155487792 155488112 -87176241 - L1M4 LINE L1 -1971 4175 3851 393 246 108 54 chr1 155488163 155488550 -87175803 - L1MEd LINE L1 -4910 1209 802 233 347 48 24 chr1 155488559 155488683 -87175670 + L2 LINE L2 2644 2770 -544 395 300 9 0 chr1 155488688 155488798 -87175555 + L2 LINE L2 2942 3052 -261 385 268 49 8 chr1 155489156 155489279 -87175074 + LTR16C LTR ERVL 358 485 -6 437 122 0 0 chr1 155489602 155489676 -87174677 - L1MA5 LINE L1 -2 6298 6225 214 206 29 0 chr1 155489892 155489960 -87174393 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 1623 144 74 0 chr1 155489960 155490244 -87174109 - L1M2 LINE L1 -507 5793 5489 2749 133 5 12 chr1 155491092 155491520 -87172833 - MER61B LTR ERV1 0 425 1 378 297 72 0 chr1 155491715 155491826 -87172527 + L2 LINE L2 3150 3268 -4 1949 143 42 67 chr1 155491841 155492289 -87172064 - LTR23 LTR ERV1 0 437 1 334 267 48 19 chr1 155493008 155493113 -87171240 - L2 LINE L2 -1 3312 3205 546 301 64 18 chr1 155494868 155495087 -87169266 - MIR SINE MIR -32 230 2 198 71 0 0 chr1 155495331 155495359 -87168994 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 721 252 106 25 chr1 155495961 155496235 -87168118 - L1MC4a LINE L1 -1847 5961 5666 6276 45 23 0 chr1 155496538 155497312 -87167041 - L1PA5 LINE L1 -2 6152 5361 284 260 31 63 chr1 155497576 155497703 -87166650 + MIR SINE MIR 110 232 -30 31 26 0 0 chr1 155498282 155498320 -87166033 + AT_rich Low_complexity Low_complexity 1 38 0 461 223 78 118 chr1 155499968 155500243 -87164110 - L1ME4a LINE L1 -1 6120 5860 1190 181 71 99 chr1 155500243 155500516 -87163837 - MER2 DNA MER2_type 0 344 82 2477 70 0 0 chr1 155500516 155500816 -87163537 + AluY SINE Alu 1 300 -11 1190 181 71 99 chr1 155500816 155500896 -87163457 - MER2 DNA MER2_type -262 82 1 461 223 78 118 chr1 155500896 155500966 -87163387 - L1ME4a LINE L1 -261 5860 5789 2697 181 14 72 chr1 155501702 155502282 -87162071 - MLT2B3 LTR ERVL -8 546 1 9075 159 43 14 chr1 155502282 155503854 -87160499 - ERVL-B3 LTR ERVL -7 5757 4140 1021 253 49 40 chr1 155503830 155503973 -87160380 - ERVL-B3 LTR ERVL -5414 350 210 * 1874 122 0 73 chr1 155503973 155504276 -87160077 + AluSx SINE Alu 13 293 -19 1021 253 49 40 chr1 155504276 155504456 -87159897 - ERVL-B3 LTR ERVL -5554 210 24 326 214 0 14 chr1 155504445 155504515 -87159838 - Ricksha DNA DNA -1120 926 858 * 2515 226 20 6 chr1 155504576 155505076 -87159277 - MLT2B3 LTR ERVL -47 507 1 3640 98 11 0 chr1 155506094 155506615 -87157738 - L1PA13 LINE L1 -3 6160 5634 279 140 0 20 chr1 155506989 155507039 -87157314 - MLT1D LTR MaLR 0 505 457 1195 190 31 0 chr1 155507087 155507313 -87157040 - MLT1D LTR MaLR -272 233 1 6925 34 1 1 chr1 155507765 155509277 -87155076 - L1PA5 LINE L1 -1 6153 4525 421 53 133 0 chr1 155509277 155509352 -87155001 + L1P LINE L1 2093 2177 -3969 27 73 0 0 chr1 155509353 155509408 -87154945 + AT_rich Low_complexity Low_complexity 1 55 0 2239 52 10 0 chr1 155509419 155509710 -87154643 + L1P LINE L1 2132 2425 -3721 1862 198 75 32 chr1 155510414 155510878 -87153475 + LTR2B LTR ERV1 7 490 0 7200 46 2 3 chr1 155510990 155512050 -87152303 + L1PA5 LINE L1 5086 6146 -8 189 0 0 0 chr1 155512050 155512071 -87152282 + (TA)n Simple_repeat Simple_repeat 2 22 0 248 120 20 0 chr1 155512481 155512531 -87151822 + (CA)n Simple_repeat Simple_repeat 1 51 0 184 371 147 28 chr1 155512535 155512821 -87151532 - L2 LINE L2 -735 2579 2260 584 218 8 8 chr1 155513267 155513391 -87150962 + MLT1I LTR MaLR 3 126 -283 405 275 120 18 chr1 155513429 155513596 -87150757 + MLT1I LTR MaLR 226 409 0 313 138 0 17 chr1 155513601 155513659 -87150694 + MLT1I-int LTR MaLR 6 62 -1309 481 271 25 8 chr1 155514698 155514816 -87149537 - L2 LINE L2 0 3313 3194 425 334 29 55 chr1 155515256 155515600 -87148753 - L2 LINE L2 -907 2407 2073 775 270 94 82 chr1 155515684 155516110 -87148243 + MLT1J2 LTR MaLR 20 450 0 401 313 102 7 chr1 155516200 155516347 -87148006 - MER5B DNA MER1_type -16 162 2 318 225 100 0 chr1 155516382 155516462 -87147891 - MER94 DNA DNA -8 126 39 22 56 0 0 chr1 155516680 155516716 -87147637 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 155517647 155517668 -87146685 + AT_rich Low_complexity Low_complexity 1 21 0 7853 200 22 27 chr1 155518014 155520769 -87143584 - L1MA4A LINE L1 -24 6279 3495 5268 158 44 16 chr1 155520768 155521911 -87142442 - L1PA16 LINE L1 0 7604 6411 * 2006 142 0 3 chr1 155521911 155522207 -87142146 + AluSx SINE Alu 4 298 -14 5268 158 44 16 chr1 155522207 155522557 -87141796 - L1PA16 LINE L1 -1193 6411 6072 8384 223 21 28 chr1 155522558 155524033 -87140320 - L1PA16 LINE L1 -2445 5139 3687 1985 137 3 3 chr1 155524033 155524326 -87140027 - AluSq SINE Alu -20 293 1 8384 223 21 28 chr1 155524326 155525206 -87139147 - L1PA16 LINE L1 -3897 3687 2803 2994 285 12 30 chr1 155525188 155526183 -87138170 - L1PA16 LINE L1 -5796 1785 8 * 23 68 0 0 chr1 155526234 155526278 -87138075 + AT_rich Low_complexity Low_complexity 1 44 0 322 310 46 0 chr1 155526584 155526671 -87137682 - L2 LINE L2 -34 3279 3189 288 213 38 55 chr1 155527530 155527713 -87136640 + (TA)n Simple_repeat Simple_repeat 1 180 0 2701 194 10 14 chr1 155527725 155528219 -87136134 + MLT1D LTR MaLR 12 503 -2 277 346 45 50 chr1 155528409 155528611 -87135742 - L2 LINE L2 -201 3071 2871 323 322 186 40 chr1 155528749 155529205 -87135148 - L2 LINE L2 -628 2686 2164 2317 97 0 23 chr1 155529735 155530043 -87134310 + AluSq SINE Alu 1 301 -12 1983 171 84 30 chr1 155530528 155530968 -87133385 - MLT1D LTR MaLR 0 505 42 193 29 29 29 chr1 155531877 155531912 -87132441 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1195 158 0 0 chr1 155531916 155532099 -87132254 - AluY SINE Alu -33 278 96 380 287 17 9 chr1 155532879 155532994 -87131359 - MIR SINE MIR -63 145 30 663 239 13 31 chr1 155533358 155533517 -87130836 + MER91B DNA MER1_type 35 190 0 780 0 52 9 chr1 155536931 155537047 -87127306 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 2030 227 65 2 chr1 155537059 155537487 -87126866 - LTR42 LTR ERVL -40 455 1 23 0 0 0 chr1 155539289 155539312 -87125041 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr1 155540952 155540983 -87123370 + AT_rich Low_complexity Low_complexity 1 31 0 219 417 35 0 chr1 155541054 155541169 -87123184 - MIR3 SINE MIR -87 121 3 261 0 0 0 chr1 155541332 155541361 -87122992 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 702 259 86 11 chr1 155543303 155543587 -87120766 + L1PBa LINE L1 1535 1983 -4233 265 236 146 0 chr1 155543606 155543695 -87120658 + L1MEc LINE L1 1879 1980 -4416 336 287 25 69 chr1 155543732 155543934 -87120419 + L1MEc LINE L1 2050 2242 -3973 1468 234 62 62 chr1 155543978 155544449 -87119904 + L1MEc LINE L1 2380 2853 -3362 2294 119 0 0 chr1 155544449 155544761 -87119592 + AluSx SINE Alu 1 312 0 1468 234 62 62 chr1 155544761 155545045 -87119308 + L1MEc LINE L1 2852 3135 -3080 238 242 61 15 chr1 155545045 155545111 -87119242 + MER21A LTR ERV1 392 460 -471 733 148 22 15 chr1 155545144 155545279 -87119074 + MER4B-int LTR ERV1 1 136 -6622 2848 231 41 32 chr1 155545300 155545988 -87118365 + L1PA13 LINE L1 2 695 -6092 576 99 0 0 chr1 155545997 155546078 -87118275 + L1PA15 LINE L1 6067 6147 -18 3908 264 79 29 chr1 155546108 155548779 -87115574 + L1MEc LINE L1 3164 5966 -273 960 255 72 46 chr1 155548764 155549180 -87115173 + L1ME3 LINE L1 5727 6153 -9 * 25 31 0 0 chr1 155549338 155549370 -87114983 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 155549539 155549564 -87114789 + AT_rich Low_complexity Low_complexity 1 25 0 1184 296 94 11 chr1 155549579 155550258 -87114095 + L2 LINE L2 2579 3310 -3 209 368 38 9 chr1 155551591 155551697 -87112656 - L2 LINE L2 -43 3229 3121 501 141 0 0 chr1 155551856 155551941 -87112412 + (TG)n Simple_repeat Simple_repeat 1 85 0 206 272 114 26 chr1 155552019 155552103 -87112250 - L2 LINE L2 -1353 1961 1863 1744 193 3 7 chr1 155552103 155552409 -87111944 + AluJo SINE Alu 2 306 -6 206 272 114 26 chr1 155552409 155552438 -87111915 - L2 LINE L2 -1451 1863 1838 21 57 0 0 chr1 155552614 155552649 -87111704 + AT_rich Low_complexity Low_complexity 1 35 0 353 309 65 8 chr1 155552702 155552825 -87111528 - L2 LINE L2 0 3272 3143 3876 196 27 48 chr1 155552887 155553877 -87110476 + LTR5 LTR ERVK 1 969 0 411 186 10 21 chr1 155553883 155553980 -87110373 + HERVK LTR ERVK 7 102 -7141 * 11162 148 16 10 chr1 155553974 155557551 -87106802 + HERVK LTR ERVK 3881 7241 -2 3935 195 28 50 chr1 155557553 155558543 -87105810 + LTR5 LTR ERVK 1 969 0 563 320 155 9 chr1 155559726 155560067 -87104286 - L3 LINE CR1 -2 1575 1185 2211 128 0 0 chr1 155560071 155560383 -87103970 - AluSx SINE Alu 0 312 1 189 128 0 51 chr1 155560412 155560451 -87103902 + L2 LINE L2 3269 3305 -8 290 210 190 10 chr1 155560459 155560559 -87103794 - MLT1E1 LTR MaLR -535 119 2 209 95 0 24 chr1 155560868 155560910 -87103443 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1974 24 4 28 chr1 155560936 155561187 -87103166 - L1PA4 LINE L1 0 6155 5911 21 36 0 0 chr1 155562208 155562236 -87102117 + AT_rich Low_complexity Low_complexity 1 28 0 3202 111 11 2 chr1 155562265 155562734 -87101619 + MER1A DNA MER1_type 57 529 0 237 295 87 34 chr1 155564519 155564726 -87099627 - HAL1 LINE L1 -874 1633 1416 1774 171 62 16 chr1 155564726 155565229 -87099124 - LTR27 LTR ERV1 0 501 1 477 243 116 122 chr1 155565324 155565834 -87098519 - L1MEd LINE L1 -4943 1176 670 252 333 8 16 chr1 155565928 155566057 -87098296 - L1MEd LINE L1 -5559 560 433 185 170 38 0 chr1 155566590 155566643 -87097710 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 1205 311 60 7 chr1 155566880 155567314 -87097039 - L3 LINE CR1 -36 1541 1085 669 186 0 0 chr1 155567430 155567554 -87096799 + L1PB4 LINE L1 6020 6143 -13 281 354 56 56 chr1 155568284 155568479 -87095874 - L2 LINE L2 -34 3238 3044 308 322 157 29 chr1 155568531 155568773 -87095580 - L2 LINE L2 -1015 2299 2027 312 306 167 17 chr1 155568812 155568992 -87095361 - MIR SINE MIR -38 224 18 3462 126 4 4 chr1 155568993 155569517 -87094836 + MER1A DNA MER1_type 1 524 -5 515 314 41 0 chr1 155569631 155569800 -87094553 + MER45A DNA AcHobo 1 176 -2 1780 177 3 19 chr1 155570336 155570647 -87093706 - AluJo SINE Alu -6 306 1 547 266 67 71 chr1 155570732 155571014 -87093339 + L2 LINE L2 3033 3313 0 1194 251 102 13 chr1 155571562 155572032 -87092321 + Charlie7 DNA MER1_type 52 563 -2049 1307 229 83 0 chr1 155572159 155572473 -87091880 + MER58B DNA MER1_type 1 340 -1 245 264 110 74 chr1 155572593 155572702 -87091651 - L2 LINE L2 -50 3263 3145 2168 117 0 7 chr1 155572702 155572993 -87091360 + AluSx SINE Alu 1 289 -23 245 264 110 74 chr1 155572993 155573046 -87091307 - L2 LINE L2 -168 3145 3095 348 182 41 50 chr1 155573104 155573225 -87091128 - L1MA9 LINE L1 -33 6279 6160 301 321 55 0 chr1 155575756 155575830 -87088523 + L2 LINE L2 3156 3239 -33 1757 165 112 11 chr1 155575830 155576206 -87088147 + MLT2D LTR ERVL 1 414 0 301 321 55 0 chr1 155576206 155576240 -87088113 + L2 LINE L2 3239 3270 -2 983 228 18 31 chr1 155577153 155577377 -87086976 - MER58A DNA MER1_type -3 221 1 1034 181 60 38 chr1 155577699 155577964 -87086389 + MER58B DNA MER1_type 71 341 0 369 0 0 0 chr1 155578446 155578487 -87085866 + (TG)n Simple_repeat Simple_repeat 2 42 0 181 289 70 42 chr1 155579316 155579458 -87084895 + MIR SINE MIR 41 186 -76 800 257 11 27 chr1 155579853 155580040 -87084313 + MER5A DNA MER1_type 6 189 0 232 280 100 33 chr1 155580408 155580558 -87083795 - L2 LINE L2 -571 2743 2584 201 304 40 136 chr1 155580726 155580976 -87083377 + L2 LINE L2 2971 3196 -76 * 1933 274 140 22 chr1 155580972 155581223 -87083130 - L2 LINE L2 -1 3312 3092 1676 141 26 56 chr1 155581223 155581528 -87082825 - AluSx SINE Alu -16 296 1 1933 274 140 22 chr1 155581528 155582300 -87082053 - L2 LINE L2 -221 3092 2184 318 233 41 14 chr1 155582308 155582381 -87081972 + L2 LINE L2 3238 3312 -1 555 276 156 31 chr1 155587123 155587348 -87077005 + L2 LINE L2 2633 2885 -429 347 237 69 52 chr1 155587924 155588097 -87076256 + MER74B LTR ERVL 442 617 -5 689 286 30 26 chr1 155588123 155588354 -87075999 - MIR SINE MIR -3 259 28 1177 258 160 43 chr1 155591683 155592536 -87071817 + L2 LINE L2 2371 3313 0 25 31 0 0 chr1 155594493 155594525 -87069828 + AT_rich Low_complexity Low_complexity 1 32 0 7376 95 5 23 chr1 155595389 155596480 -87067873 + MER11C LTR ERVK 1 1071 0 522 256 54 0 chr1 155596647 155596815 -87067538 - LTR33A LTR ERVL 0 523 347 207 100 0 0 chr1 155598113 155598143 -87066210 + (CA)n Simple_repeat Simple_repeat 1 30 0 929 260 135 9 chr1 155598451 155598770 -87065583 - L2 LINE L2 -2 3311 2953 2386 80 3 0 chr1 155598795 155599094 -87065259 - AluSc SINE Alu -9 300 1 261 83 0 0 chr1 155599098 155599134 -87065219 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr1 155601051 155601072 -87063281 + AT_rich Low_complexity Low_complexity 1 21 0 561 280 116 42 chr1 155601201 155601873 -87062480 - L1M4 LINE L1 -755 5391 4690 22 0 0 0 chr1 155601957 155601979 -87062374 + AT_rich Low_complexity Low_complexity 1 22 0 472 278 112 102 chr1 155602276 155602910 -87061443 - L1M4 LINE L1 -1857 4289 3648 360 299 137 41 chr1 155603477 155603821 -87060532 - L1M4 LINE L1 -2905 3241 2865 232 325 20 7 chr1 155603847 155603998 -87060355 - L1M4 LINE L1 -3312 2834 2682 21 36 0 0 chr1 155604563 155604591 -87059762 + AT_rich Low_complexity Low_complexity 1 28 0 1012 289 86 23 chr1 155604911 155605389 -87058964 - L1ME3A LINE L1 -8 6162 5655 27 0 0 0 chr1 155605472 155605499 -87058854 + AT_rich Low_complexity Low_complexity 1 27 0 2179 133 13 49 chr1 155605506 155605897 -87058456 - MER51B LTR ERV1 0 377 1 2206 142 15 0 chr1 155605898 155606237 -87058116 - MER51B-int LTR ERV1 0 7816 7473 745 146 22 7 chr1 155606238 155606375 -87057978 - LTR54B LTR ERV1 -357 141 3 3902 114 99 0 chr1 155606375 155606972 -87057381 - MER51B-int LTR ERV1 -389 7148 6493 1812 121 7 3 chr1 155606971 155607260 -87057093 - MER51B-int LTR ERV1 -2599 4938 4649 * 16138 134 45 20 chr1 155607235 155608783 -87055570 - MER51B-int LTR ERV1 -4537 3279 1659 2386 78 0 13 chr1 155608783 155609089 -87055264 - AluY SINE Alu -9 302 1 16138 134 45 20 chr1 155609089 155610456 -87053897 - MER51B-int LTR ERV1 -6157 1659 329 914 136 105 19 chr1 155610444 155610519 -87053834 - MER51B-int LTR ERV1 -7640 176 109 * 351 0 0 0 chr1 155610519 155610558 -87053795 + (GA)n Simple_repeat Simple_repeat 2 40 0 914 136 105 19 chr1 155610558 155610644 -87053709 - MER51B-int LTR ERV1 -7707 109 1 1975 129 2 2 chr1 155610644 155611030 -87053323 - MER51B LTR ERV1 0 377 48 358 147 173 13 chr1 155611020 155611095 -87053258 - MER51A LTR ERV1 -546 88 2 * 334 143 18 0 chr1 155611105 155611161 -87053192 - L1M4 LINE L1 -1039 5107 5051 30140 110 12 24 chr1 155611226 155614688 -87049665 + L1PA7 LINE L1 8 3554 -2915 2461 75 0 0 chr1 155614688 155614983 -87049370 + AluY SINE Alu 1 295 -16 30140 110 12 24 chr1 155614983 155617859 -87046494 + L1PA7 LINE L1 3554 6465 -4 411 21 0 0 chr1 155617978 155618026 -87046327 + (CA)n Simple_repeat Simple_repeat 2 49 0 2460 105 0 3 chr1 155618026 155618379 -87045974 + L1PB1 LINE L1 5793 6144 -7 1760 259 21 0 chr1 155618411 155618941 -87045412 - L1M4 LINE L1 -3267 3690 3150 1839 294 88 51 chr1 155618985 155619931 -87044422 - L1M4 LINE L1 -5656 1203 11 408 262 6 85 chr1 155620726 155620859 -87043494 - MLT1J LTR MaLR -315 196 77 2136 127 7 0 chr1 155620859 155621159 -87043194 - AluSx SINE Alu -10 302 1 408 262 6 85 chr1 155621159 155621189 -87043164 - MLT1J LTR MaLR -434 77 46 1276 301 112 7 chr1 155621257 155621676 -87042677 + LTR16B LTR ERVL 2 464 0 715 184 70 6 chr1 155621888 155622046 -87042307 + LTR54 LTR ERV1 3 170 -340 656 121 0 10 chr1 155622049 155622148 -87042205 + MER4A LTR ERV1 1 98 -566 1813 137 3 19 chr1 155622148 155622499 -87041854 + MER4A LTR ERV1 261 664 0 3823 132 195 88 chr1 155622502 155623189 -87041164 + MER4A-int LTR ERV1 1 831 -5767 462 18 0 0 chr1 155623189 155623244 -87041109 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3823 132 195 88 chr1 155623244 155623559 -87040794 + MER4A-int LTR ERV1 831 1111 -5487 237 65 0 0 chr1 155623559 155623590 -87040763 + (TG)n Simple_repeat Simple_repeat 2 32 0 6952 115 63 20 chr1 155623590 155624860 -87039493 + MER4A-int LTR ERV1 1161 2485 -4113 1280 142 79 8 chr1 155624873 155625113 -87039240 - LTR8 LTR ERV1 -434 257 1 2583 136 98 26 chr1 155625114 155625219 -87039134 + MER4A-int LTR ERV1 2738 2834 -3764 267 79 0 0 chr1 155625219 155625257 -87039096 + (TTAAA)n Simple_repeat Simple_repeat 4 41 0 2583 136 98 26 chr1 155625257 155625834 -87038519 + MER4A-int LTR ERV1 2834 3469 -3129 373 102 34 0 chr1 155625840 155625899 -87038454 + MER4A-int LTR ERV1 3621 3681 -2917 * 15631 115 53 16 chr1 155625896 155628557 -87035796 + MER4A-int LTR ERV1 3840 6598 0 635 131 0 10 chr1 155628558 155628657 -87035696 + MER4A LTR ERV1 1 98 -566 1683 166 6 23 chr1 155628657 155628994 -87035359 + MER4A LTR ERV1 261 650 -14 2585 112 101 14 chr1 155629022 155629458 -87034895 + MER4A-int LTR ERV1 1 474 -6124 3266 108 0 24 chr1 155629462 155629962 -87034391 + MER4A-int LTR ERV1 783 1270 -3745 2259 94 6 28 chr1 155629963 155630281 -87034072 + AluY SINE Alu 1 311 0 474 18 0 0 chr1 155630281 155630320 -87034033 + (CA)n Simple_repeat Simple_repeat 1 94 0 474 18 0 0 chr1 155630320 155630375 -87033978 + (CA)n Simple_repeat Simple_repeat 2 56 0 495 122 12 0 chr1 155630387 155630468 -87033885 + LTR54 LTR ERV1 408 489 -21 1827 153 3 22 chr1 155630468 155630820 -87033533 - MER4A LTR ERV1 0 664 261 614 131 0 10 chr1 155630820 155630919 -87033434 - MER4A LTR ERV1 -566 98 1 14881 111 70 23 chr1 155630930 155633396 -87030957 - MER4A-int LTR ERV1 -5 6593 3999 2208 109 0 3 chr1 155633396 155633690 -87030663 + AluSq SINE Alu 1 293 -20 14881 111 70 23 chr1 155633690 155633812 -87030541 - MER4A-int LTR ERV1 -2599 3999 3884 1976 151 136 32 chr1 155633788 155634317 -87030036 - MER4A-int LTR ERV1 -3278 3320 2737 * 1135 155 146 9 chr1 155634317 155634543 -87029810 + LTR8 LTR ERV1 1 257 -434 7813 121 64 10 chr1 155634543 155635504 -87028849 - MER4A-int LTR ERV1 -4103 2495 1430 216 0 0 0 chr1 155635504 155635528 -87028825 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7813 121 64 10 chr1 155635528 155635992 -87028361 - MER4A-int LTR ERV1 -5168 1430 993 258 160 0 40 chr1 155636012 155636062 -87028291 - LTR49 LTR ERV1 -282 313 266 257 100 0 117 chr1 155636062 155636122 -87028231 - MER4A-int LTR ERV1 -5851 747 695 2863 85 100 21 chr1 155636124 155636775 -87027578 - MER4A-int LTR ERV1 -5774 824 1 1815 121 23 30 chr1 155636777 155637125 -87027228 - MER4A LTR ERV1 0 664 261 563 134 21 10 chr1 155637125 155637222 -87027131 - MER4A LTR ERV1 -566 98 1 986 295 138 10 chr1 155638422 155638835 -87025518 - MLT1J LTR MaLR -45 466 1 22 0 0 0 chr1 155638935 155638957 -87025396 + AT_rich Low_complexity Low_complexity 1 22 0 332 224 97 67 chr1 155639963 155640096 -87024257 + L2 LINE L2 2837 2982 -290 307 295 72 24 chr1 155640324 155640490 -87023863 + L1MC/D LINE L1 5625 5798 -2010 342 146 0 0 chr1 155640490 155640545 -87023808 - MLT2C2 LTR ERVL 0 520 466 2293 213 0 5 chr1 155640579 155640997 -87023356 - MLT2C2 LTR ERVL -48 416 1 1538 201 3 40 chr1 155641265 155641589 -87022764 + AluJo SINE Alu 1 312 0 23 0 0 0 chr1 155641624 155641647 -87022706 + AT_rich Low_complexity Low_complexity 1 23 0 269 314 23 0 chr1 155642318 155642404 -87021949 - MIR SINE MIR -76 186 99 216 0 0 0 chr1 155642461 155642485 -87021868 + (TA)n Simple_repeat Simple_repeat 1 24 0 708 336 139 29 chr1 155642632 155643280 -87021073 - L2 LINE L2 -2071 1243 525 7002 65 0 0 chr1 155643386 155645140 -87019213 + L1PA7 LINE L1 4386 6141 -13 1110 176 54 31 chr1 155645226 155645344 -87019009 + MIR SINE MIR 34 161 -101 4111 137 19 75 chr1 155645344 155646175 -87018178 - LTR1 LTR ERV1 0 785 1 1110 176 54 31 chr1 155646175 155646278 -87018075 + MIR SINE MIR 161 260 -2 24 0 0 0 chr1 155647816 155647840 -87016513 + AT_rich Low_complexity Low_complexity 1 24 0 194 253 110 32 chr1 155650033 155650187 -87014166 + MIR SINE MIR 91 256 -6 203 200 22 0 chr1 155650326 155650371 -87013982 + GA-rich Low_complexity Low_complexity 1 46 0 292 341 12 12 chr1 155650731 155650901 -87013452 + L1MDa LINE L1 18 187 -6353 308 260 0 0 chr1 155651024 155651101 -87013252 + L1M4 LINE L1 2947 3023 -3123 9730 98 5 3 chr1 155651102 155652444 -87011909 + L1P LINE L1 2 1346 -4800 291 246 77 0 chr1 155652663 155652728 -87011625 + MER3 DNA MER1_type 2 71 -138 2274 93 10 0 chr1 155654605 155654896 -87009457 - AluSx SINE Alu -18 294 1 324 340 0 39 chr1 155654996 155655149 -87009204 + MER5B DNA MER1_type 3 149 -29 381 283 28 69 chr1 155655168 155655313 -87009040 - MIR SINE MIR 0 262 124 405 332 156 5 chr1 155656559 155656758 -87007595 - MIR SINE MIR -17 245 17 1089 263 113 68 chr1 155656788 155657176 -87007177 + MLT1G LTR MaLR 1 370 -160 326 366 189 14 chr1 155657208 155657489 -87006864 + L2 LINE L2 2943 3272 0 1183 319 66 19 chr1 155658022 155658612 -87005741 + L1MDa LINE L1 417 1034 -5687 1449 275 83 19 chr1 155658644 155659375 -87004978 + L1MDa LINE L1 1638 2415 -4306 261 163 0 0 chr1 155659678 155659727 -87004626 + (TG)n Simple_repeat Simple_repeat 2 50 0 208 219 232 0 chr1 155659740 155659822 -87004531 + L2 LINE L2 3211 3311 -2 561 122 0 137 chr1 155660817 155660956 -87003397 + L1MA9 LINE L1 6156 6275 -37 981 181 62 29 chr1 155661157 155661367 -87002986 - MER20 DNA MER1_type 0 219 3 1387 214 25 7 chr1 155661606 155661887 -87002466 + MSTD LTR MaLR 111 396 0 1704 11 0 5 chr1 155661921 155662110 -87002243 + AluY SINE Alu 32 219 -92 493 268 10 81 chr1 155662210 155662419 -87001934 - L1MC/D LINE L1 -2060 5748 5555 205 172 35 35 chr1 155662522 155662609 -87001744 + (TTATA)n Simple_repeat Simple_repeat 4 90 0 23 0 0 0 chr1 155662640 155662663 -87001690 + AT_rich Low_complexity Low_complexity 1 23 0 1412 93 10 0 chr1 155662738 155662942 -87001411 + L1PA14 LINE L1 5954 6159 -2 419 260 30 24 chr1 155662982 155663151 -87001202 - L1M4 LINE L1 -2913 3233 3064 249 224 65 9 chr1 155663225 155663332 -87001021 - L1M4 LINE L1 -3181 2965 2853 3021 89 59 2 chr1 155663891 155664349 -87000004 - L1P4 LINE L1 -401 5767 5284 436 214 0 0 chr1 155664349 155664530 -86999823 + L1P LINE L1 2391 2760 -3386 * 3244 182 30 5 chr1 155664524 155665184 -86999169 - L1P LINE L1 -781 5365 4689 678 246 126 11 chr1 155667859 155668050 -86996303 + MIR SINE MIR 32 244 -18 1517 130 0 29 chr1 155668885 155669124 -86995229 - AluSg/x SINE Alu 0 310 79 399 146 0 0 chr1 155669124 155669179 -86995174 + AluS SINE Alu 33 87 -215 22 0 0 0 chr1 155669242 155669264 -86995089 + AT_rich Low_complexity Low_complexity 1 22 0 517 269 42 46 chr1 155669467 155669683 -86994670 + MIR SINE MIR 10 224 -38 908 184 6 0 chr1 155669762 155669925 -86994428 + FRAM SINE Alu 1 164 -2 3993 69 9 34 chr1 155671033 155671601 -86992752 - MER41A LTR ERV1 0 554 1 348 24 0 0 chr1 155672029 155672070 -86992283 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 688 298 50 37 chr1 155672080 155672402 -86991951 - L2 LINE L2 -27 3286 2961 10339 53 1 2 chr1 155674066 155676138 -86988215 + L1PA6 LINE L1 4079 6149 -5 2285 54 44 3 chr1 155676265 155676562 -86987791 - AluY SINE Alu -2 309 1 237 33 0 0 chr1 155678216 155678246 -86986107 + (TG)n Simple_repeat Simple_repeat 2 31 0 371 366 14 9 chr1 155678252 155678468 -86985885 - L2 LINE L2 -574 2740 2524 39 68 0 0 chr1 155678503 155678577 -86985776 + AT_rich Low_complexity Low_complexity 1 74 0 2231 109 0 0 chr1 155678578 155678871 -86985482 - AluSg SINE Alu -17 293 1 536 190 68 32 chr1 155678905 155679060 -86985293 + MER33 DNA MER1_type 1 158 -81 26 50 0 0 chr1 155679129 155679169 -86985184 + AT_rich Low_complexity Low_complexity 1 40 0 618 158 82 6 chr1 155679174 155679332 -86985021 + MER33 DNA MER1_type 155 324 0 195 303 128 55 chr1 155680476 155680585 -86983768 - L2 LINE L2 -8 3264 3148 183 80 0 0 chr1 155680763 155680788 -86983565 + (TG)n Simple_repeat Simple_repeat 2 26 0 897 191 38 0 chr1 155680822 155680979 -86983374 - AluJo SINE Alu -29 283 121 498 318 87 40 chr1 155681844 155682313 -86982040 + L2 LINE L2 531 1021 -2293 21 0 0 0 chr1 155682393 155682414 -86981939 + AT_rich Low_complexity Low_complexity 1 21 0 497 286 101 0 chr1 155682875 155683053 -86981300 - MIR SINE MIR -62 200 5 1570 130 0 0 chr1 155684057 155684272 -86980081 + AluSx SINE Alu 1 215 -97 730 243 89 73 chr1 155684998 155685369 -86978984 - L1ME3A LINE L1 0 6170 5794 304 290 47 19 chr1 155685417 155685524 -86978829 + L1MC4 LINE L1 6592 6701 -1341 554 229 157 6 chr1 155685544 155685710 -86978643 - L1ME3A LINE L1 -377 5793 5603 2283 104 7 0 chr1 155686803 155687111 -86977242 + AluSp SINE Alu 1 310 -3 376 279 81 97 chr1 155687694 155687959 -86976394 - L1ME3A LINE L1 -1977 4169 3912 3195 115 4 4 chr1 155687959 155688437 -86975916 - L1PB3 LINE L1 -1 6153 5676 376 279 81 97 chr1 155688437 155688605 -86975748 - L1ME3A LINE L1 -2234 3912 3743 205 205 0 0 chr1 155688709 155688748 -86975605 + T-rich Low_complexity Low_complexity 5 43 0 310 283 109 50 chr1 155689027 155689349 -86975004 - L1ME3A LINE L1 -2754 3392 3052 328 227 11 0 chr1 155689405 155689493 -86974860 - L1ME3A LINE L1 -3211 2935 2847 1280 300 109 7 chr1 155690693 155691392 -86972961 + L1MC4 LINE L1 7268 8037 -5 1574 214 3 10 chr1 155692129 155692438 -86971915 + AluJo SINE Alu 1 307 -5 5137 147 8 0 chr1 155692578 155693376 -86970977 - L1PA16 LINE L1 -4 6162 5359 1851 88 19 0 chr1 155693376 155693637 -86970716 - L1PA13 LINE L1 -4 6159 5894 22 56 0 0 chr1 155693746 155693782 -86970571 + AT_rich Low_complexity Low_complexity 1 36 0 318 225 100 0 chr1 155694000 155694080 -86970273 + MER94 DNA DNA 39 126 -8 401 313 102 7 chr1 155694115 155694262 -86970091 + MER5B DNA MER1_type 2 162 -16 775 270 94 82 chr1 155694352 155694778 -86969575 - MLT1J2 LTR MaLR 0 450 20 400 336 35 56 chr1 155694862 155695204 -86969149 + L2 LINE L2 2073 2407 -907 481 271 25 8 chr1 155695644 155695762 -86968591 + L2 LINE L2 3194 3313 0 313 138 0 17 chr1 155696801 155696859 -86967494 - MLT1I-int LTR MaLR -1309 62 6 405 275 120 18 chr1 155696864 155697031 -86967322 - MLT1I LTR MaLR 0 409 226 584 218 8 8 chr1 155697069 155697193 -86967160 - MLT1I LTR MaLR -283 126 3 269 100 20 0 chr1 155697929 155697979 -86966374 + (TG)n Simple_repeat Simple_repeat 1 51 0 7272 44 0 0 chr1 155698406 155699469 -86964884 - L1PA5 LINE L1 -7 6147 5086 1869 209 11 43 chr1 155699581 155700045 -86964308 - LTR2 LTR ERV1 0 449 1 2253 48 10 0 chr1 155700748 155701039 -86963314 - L1P LINE L1 -3721 2425 2132 32 81 0 0 chr1 155701050 155701124 -86963229 + AT_rich Low_complexity Low_complexity 1 74 0 419 36 0 0 chr1 155701126 155701181 -86963172 - L1P LINE L1 -3999 2147 2093 6903 36 1 1 chr1 155701181 155702694 -86961659 + L1PA5 LINE L1 4525 6154 0 1195 190 31 0 chr1 155703143 155703369 -86960984 + MLT1D LTR MaLR 1 233 -272 279 140 0 20 chr1 155703417 155703467 -86960886 + MLT1E2 LTR MaLR 578 626 0 3640 98 11 0 chr1 155703841 155704362 -86959991 + L1PA13 LINE L1 5634 6160 -3 2509 226 20 6 chr1 155705380 155705880 -86958473 + MLT2B3 LTR ERVL 1 507 -47 334 211 0 14 chr1 155705941 155706012 -86958341 + Ricksha DNA DNA 858 927 -1119 * 1077 251 50 37 chr1 155706000 155706179 -86958174 + ERVL-B3 LTR ERVL 24 210 -5554 1918 119 0 66 chr1 155706179 155706481 -86957872 - AluSx SINE Alu -18 294 13 1077 251 50 37 chr1 155706481 155706624 -86957729 + ERVL-B3 LTR ERVL 210 350 -5414 * 9068 160 43 14 chr1 155706600 155708172 -86956181 + ERVL-B3 LTR ERVL 4140 5757 -7 2728 178 14 72 chr1 155708172 155708752 -86955601 + MLT2B3 LTR ERVL 1 546 -8 456 225 78 118 chr1 155709488 155709558 -86954795 + L1ME4a LINE L1 5789 5860 -261 1184 195 59 88 chr1 155709558 155709638 -86954715 + MER2 DNA MER2_type 1 82 -262 2463 73 0 0 chr1 155709638 155709938 -86954415 - AluY SINE Alu -11 300 1 1184 195 59 88 chr1 155709938 155710211 -86954142 + MER2 DNA MER2_type 82 344 0 456 225 78 118 chr1 155710211 155710486 -86953867 + L1ME4a LINE L1 5860 6120 -1 31 26 0 0 chr1 155712134 155712172 -86952181 + AT_rich Low_complexity Low_complexity 1 38 0 310 311 51 51 chr1 155712751 155712947 -86951406 - MIR SINE MIR -30 232 37 6219 45 23 0 chr1 155713142 155713911 -86950442 + L1PA5 LINE L1 5361 6147 -7 6471 47 1 0 chr1 155713935 155714723 -86949630 + L1PA6 LINE L1 5361 6149 -5 2255 57 44 3 chr1 155714851 155715148 -86949205 - AluY SINE Alu -2 309 1 237 33 0 0 chr1 155716800 155716830 -86947523 + (TG)n Simple_repeat Simple_repeat 2 31 0 371 366 14 9 chr1 155716836 155717052 -86947301 - L2 LINE L2 -574 2740 2524 39 68 0 0 chr1 155717087 155717161 -86947192 + AT_rich Low_complexity Low_complexity 1 74 0 2243 106 0 0 chr1 155717162 155717455 -86946898 - AluSg SINE Alu -17 293 1 538 190 68 32 chr1 155717489 155717644 -86946709 + MER33 DNA MER1_type 1 158 -81 26 50 0 0 chr1 155717713 155717753 -86946600 + AT_rich Low_complexity Low_complexity 1 40 0 618 158 82 6 chr1 155717758 155717916 -86946437 + MER33 DNA MER1_type 155 324 0 195 303 128 55 chr1 155719060 155719169 -86945184 - L2 LINE L2 -8 3264 3148 219 69 0 0 chr1 155719347 155719376 -86944977 + (TG)n Simple_repeat Simple_repeat 2 30 0 892 187 39 0 chr1 155719413 155719568 -86944785 - AluJo SINE Alu -31 281 121 498 318 87 40 chr1 155720433 155720902 -86943451 + L2 LINE L2 531 1021 -2293 21 0 0 0 chr1 155720982 155721003 -86943350 + AT_rich Low_complexity Low_complexity 1 21 0 497 286 101 0 chr1 155721464 155721642 -86942711 - MIR SINE MIR -62 200 5 1575 134 0 0 chr1 155722646 155722863 -86941490 + AluSx SINE Alu 1 217 -95 761 213 43 173 chr1 155723587 155724240 -86940113 - L1ME3A LINE L1 0 6170 5603 2283 104 7 0 chr1 155725333 155725641 -86938712 + AluSp SINE Alu 1 310 -3 380 279 81 97 chr1 155726224 155726489 -86937864 - L1ME3A LINE L1 -1977 4169 3912 3181 117 4 4 chr1 155726489 155726967 -86937386 - L1PB3 LINE L1 -1 6153 5676 380 279 81 97 chr1 155726967 155727135 -86937218 - L1ME3A LINE L1 -2234 3912 3743 205 205 0 0 chr1 155727239 155727278 -86937075 + T-rich Low_complexity Low_complexity 5 43 0 310 283 109 50 chr1 155727557 155727879 -86936474 - L1ME3A LINE L1 -2754 3392 3052 328 227 11 0 chr1 155727935 155728023 -86936330 - L1ME3A LINE L1 -3211 2935 2847 1303 299 109 7 chr1 155729223 155729922 -86934431 + L1MC4 LINE L1 7268 8037 -5 1604 216 0 10 chr1 155730659 155730969 -86933384 + AluJo SINE Alu 1 307 -5 5177 148 7 0 chr1 155731109 155731916 -86932437 - L1PA16 LINE L1 -4 6162 5350 4603 202 73 1 chr1 155731907 155732724 -86931629 - L1PA13 LINE L1 -4 6159 5284 * 416 97 0 0 chr1 155732724 155732786 -86931567 + L1P LINE L1 2391 2452 -3694 436 274 0 0 chr1 155732788 155732905 -86931448 + L1P LINE L1 2644 2760 -3386 * 3244 182 30 5 chr1 155732899 155733559 -86930794 - L1PA16 LINE L1 -781 5365 4689 678 246 126 11 chr1 155736233 155736424 -86927929 + MIR SINE MIR 32 244 -18 1531 126 0 29 chr1 155737260 155737499 -86926854 - AluSg/x SINE Alu 0 310 79 399 146 0 0 chr1 155737499 155737554 -86926799 + AluS SINE Alu 33 87 -215 22 0 0 0 chr1 155737617 155737639 -86926714 + AT_rich Low_complexity Low_complexity 1 22 0 517 269 42 46 chr1 155737842 155738058 -86926295 + MIR SINE MIR 10 224 -38 924 182 6 0 chr1 155738137 155738302 -86926051 + FRAM SINE Alu 1 166 0 3981 70 9 34 chr1 155739410 155739978 -86924375 - MER41A LTR ERV1 0 554 1 384 22 0 0 chr1 155740413 155740458 -86923895 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 688 298 50 37 chr1 155740468 155740790 -86923563 - L2 LINE L2 -27 3286 2961 10389 52 0 1 chr1 155742454 155744529 -86919824 + L1PA6 LINE L1 4079 6152 -2 721 252 106 25 chr1 155744832 155745106 -86919247 + L1MC4a LINE L1 5666 5961 -1847 198 71 0 0 chr1 155745708 155745736 -86918617 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 546 301 64 18 chr1 155745980 155746199 -86918154 + MIR SINE MIR 2 230 -32 334 267 48 19 chr1 155747942 155748047 -86916306 + L2 LINE L2 3205 3312 -1 1938 145 42 65 chr1 155748766 155749213 -86915140 + LTR23 LTR ERV1 1 437 0 361 279 72 0 chr1 155749228 155749339 -86915014 - L2 LINE L2 -4 3309 3191 2749 133 5 12 chr1 155749534 155749962 -86914391 + MER61B LTR ERV1 1 425 0 1623 144 74 0 chr1 155750810 155751094 -86913259 + L1M2 LINE L1 5489 5793 -507 214 206 29 0 chr1 155751094 155751162 -86913191 + (TATATG)n Simple_repeat Simple_repeat 1 70 0 437 122 0 0 chr1 155751378 155751452 -86912901 + L1MA5 LINE L1 6225 6298 -2 365 271 51 8 chr1 155751780 155751898 -86912455 - LTR16C LTR ERVL -11 480 358 395 300 9 0 chr1 155752256 155752366 -86911987 - L2 LINE L2 -261 3052 2942 233 347 48 24 chr1 155752371 155752495 -86911858 - L2 LINE L2 -544 2770 2644 393 246 108 54 chr1 155752504 155752891 -86911462 + L1MEd LINE L1 802 1209 -4910 612 295 49 28 chr1 155752942 155753332 -86911021 + L1M4 LINE L1 3851 4248 -1898 * 12442 37 0 0 chr1 155753331 155755118 -86909235 - L1PA5 LINE L1 -1369 4777 2991 7231 45 2 0 chr1 155755118 155756489 -86907864 + L1PA5 LINE L1 4774 6146 -8 29 0 0 0 chr1 155756489 155756518 -86907835 + AT_rich Low_complexity Low_complexity 1 29 0 2561 207 26 48 chr1 155756563 155757129 -86907224 - MLT2B3 LTR ERVL 0 554 1 3493 148 19 2 chr1 155757129 155757711 -86906642 - ERVL-B3 LTR ERVL -7 5757 5166 1303 61 0 6 chr1 155757711 155757876 -86906477 + L1P2 LINE L1 5430 5593 -561 1487 172 7 71 chr1 155757880 155758177 -86906176 - ERVL-B3 LTR ERVL -609 5155 4878 1243 261 108 15 chr1 155758211 155758637 -86905716 + L1M2c LINE L1 550 1434 -6132 4828 232 41 37 chr1 155758678 155759932 -86904421 + L1M2c LINE L1 2097 3345 -4220 2002 106 53 3 chr1 155759932 155760214 -86904139 + AluSg SINE Alu 1 296 -14 4828 232 41 37 chr1 155760214 155761059 -86903294 + L1M2c LINE L1 3345 4185 -3380 282 29 0 0 chr1 155761059 155761094 -86903259 + (TA)n Simple_repeat Simple_repeat 1 35 0 4828 232 41 37 chr1 155761094 155761252 -86903101 + L1M2c LINE L1 4185 4046 -3519 2119 140 0 0 chr1 155761252 155761560 -86902793 + AluSx SINE Alu 1 308 -4 4828 232 41 37 chr1 155761560 155762005 -86902348 + L1M2c LINE L1 4045 4487 -3078 1207 209 16 7 chr1 155762003 155762310 -86902043 + L1P LINE L1 5072 5381 -765 * 268 184 20 0 chr1 155762313 155762362 -86901991 - HERVL-B3 LTR ERVL -5079 575 526 870 150 3 22 chr1 155762362 155762536 -86901817 + MER51B LTR ERV1 34 257 -120 1503 274 52 31 chr1 155762539 155762893 -86901460 - HERVL-B3 LTR ERVL -5274 490 122 1727 179 21 0 chr1 155762893 155763178 -86901175 + AluJb SINE Alu 1 291 -21 1503 274 52 31 chr1 155763178 155763302 -86901051 - HERVL-B3 LTR ERVL -5642 122 2 1341 209 17 0 chr1 155763305 155763345 -86901008 - MLT2B3 LTR ERVL -2 552 514 793 86 16 0 chr1 155763345 155763473 -86900880 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 1341 209 17 0 chr1 155763473 155763667 -86900686 - MLT2B3 LTR ERVL -40 514 314 1915 120 117 12 chr1 155763780 155764121 -86900232 + MER51B LTR ERV1 1 377 0 1021 124 34 40 chr1 155764121 155764298 -86900055 + MER51B-int LTR ERV1 1 176 -7640 22520 118 43 15 chr1 155764309 155768696 -86895657 + MER51B-int LTR ERV1 422 4812 -3004 2142 132 0 0 chr1 155768696 155768991 -86895362 + AluSq SINE Alu 3 297 -16 22520 118 43 15 chr1 155768991 155772083 -86892270 + MER51B-int LTR ERV1 4812 7816 0 1704 138 43 4 chr1 155772086 155772423 -86891930 + MER51B LTR ERV1 3 377 0 1628 268 48 9 chr1 155772423 155772886 -86891467 + LTR26 LTR ERV1 123 603 0 1481 183 51 35 chr1 155772886 155773198 -86891155 - MLT2B3 LTR ERVL -237 317 1 39 22 0 0 chr1 155773204 155773250 -86891103 + AT_rich Low_complexity Low_complexity 1 46 0 1514 234 52 33 chr1 155773315 155773799 -86890554 + L1MC4 LINE L1 7133 7625 -417 23 0 0 0 chr1 155773838 155773861 -86890492 + AT_rich Low_complexity Low_complexity 1 23 0 953 258 117 31 chr1 155773911 155774424 -86889929 + L1ME3A LINE L1 5313 5886 -284 1221 168 168 57 chr1 155774424 155774718 -86889635 + MER4A LTR ERV1 2 241 -224 2101 107 10 13 chr1 155774718 155775017 -86889336 - AluSx SINE Alu -14 298 1 1221 168 168 57 chr1 155775017 155775270 -86889083 + MER4A LTR ERV1 241 465 0 242 54 0 27 chr1 155775287 155775324 -86889029 + (TA)n Simple_repeat Simple_repeat 1 36 0 533 273 144 10 chr1 155775342 155775536 -86888817 + L1ME3A LINE L1 5938 6157 -13 246 320 33 33 chr1 155775553 155775675 -86888678 + L1MC/D LINE L1 5439 5560 -2248 13176 226 45 40 chr1 155775701 155781868 -86882485 + L1PA16 LINE L1 2 6826 -778 1817 161 10 26 chr1 155781868 155782173 -86882180 + AluSx SINE Alu 1 300 -12 13176 226 45 40 chr1 155782173 155782956 -86881397 + L1PA16 LINE L1 6826 7604 0 374 231 85 8 chr1 155782984 155783114 -86881239 + L1MC/D LINE L1 5611 5750 -2058 206 423 27 0 chr1 155784867 155784978 -86879375 - L2 LINE L2 -34 3238 3125 21 0 0 0 chr1 155785286 155785307 -86879046 + AT_rich Low_complexity Low_complexity 1 21 0 3040 165 35 0 chr1 155785889 155786405 -86877948 + L1MC1 LINE L1 5775 6308 -25 38 0 0 0 chr1 155786405 155786443 -86877910 + AT_rich Low_complexity Low_complexity 1 38 0 538 71 65 18 chr1 155786443 155786612 -86877741 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 211 62 37 62 chr1 155786624 155786705 -86877648 + (TATAA)n Simple_repeat Simple_repeat 1 79 0 237 209 32 38 chr1 155786715 155786873 -86877480 + (TTATA)n Simple_repeat Simple_repeat 1 157 0 * 326 207 46 17 chr1 155786760 155786934 -86877419 + (TA)n Simple_repeat Simple_repeat 2 180 0 186 103 0 0 chr1 155787383 155787412 -86876941 + (CA)n Simple_repeat Simple_repeat 2 30 0 335 327 50 28 chr1 155788141 155788302 -86876051 - MIR SINE MIR -65 143 8 1356 160 19 26 chr1 155788944 155789212 -86875141 + L1PA15 LINE L1 5896 6161 -4 1885 154 7 0 chr1 155789248 155789533 -86874820 + AluJb SINE Alu 1 287 -25 1314 258 86 17 chr1 155789723 155790199 -86874154 - Charlie7 DNA MER1_type -2054 558 50 2147 295 90 28 chr1 155790860 155791690 -86872663 + L1M2b LINE L1 21 902 -6307 * 6187 221 30 9 chr1 155791688 155793874 -86870479 + L1M2b LINE L1 1719 3948 -3260 3802 196 29 7 chr1 155795323 155796208 -86868145 + L1M2b LINE L1 3962 4866 -2342 7532 32 0 2 chr1 155796327 155797263 -86867090 + L1PA3 LINE L1 5222 6155 0 408 20 0 0 chr1 155797725 155797774 -86866579 + (CA)n Simple_repeat Simple_repeat 2 50 0 286 290 139 83 chr1 155797996 155798902 -86865451 + L1MEd LINE L1 113 1069 -5050 15966 175 15 12 chr1 155798920 155802281 -86862072 + L1PA14 LINE L1 2737 6111 -753 2293 107 0 16 chr1 155802281 155802599 -86861754 + AluSp SINE Alu 1 313 0 15966 175 15 12 chr1 155802599 155803107 -86861246 + L1PA14 LINE L1 6111 6616 -248 3261 132 58 4 chr1 155803926 155804478 -86859875 - L1MB3 LINE L1 0 6183 5602 189 0 0 0 chr1 155804930 155804951 -86859402 + (TGG)n Simple_repeat Simple_repeat 3 23 0 2044 113 14 14 chr1 155805165 155805458 -86858895 + AluSx SINE Alu 5 297 -15 349 333 24 8 chr1 155806558 155806681 -86857672 - MIR SINE MIR -61 147 23 6633 45 2 0 chr1 155808357 155809172 -86855181 + L1PA5 LINE L1 5335 6151 -3 905 290 149 27 chr1 155810255 155810962 -86853391 - L2 LINE L2 -68 3245 2449 815 267 112 55 chr1 155811017 155811418 -86852935 + LTR16C LTR ERVL 67 490 -1 3005 251 76 56 chr1 155811418 155812470 -86851883 - L2 LINE L2 -1000 2314 1242 339 347 66 0 chr1 155813179 155813346 -86851007 + MIR SINE MIR 20 197 -65 2706 152 6 17 chr1 155813375 155813841 -86850512 - MLT1C LTR MaLR -6 461 1 1953 136 42 0 chr1 155814901 155815188 -86849165 - AluSq SINE Alu -14 299 1 457 325 52 16 chr1 155815799 155815990 -86848363 + MIR SINE MIR 8 205 -57 1413 273 16 33 chr1 155816202 155816686 -86847667 + L1PB4 LINE L1 9 484 -6365 1402 290 11 32 chr1 155816986 155817545 -86846808 + L1PB4 LINE L1 688 1234 -5615 6103 211 50 90 chr1 155817549 155821260 -86843093 + L1PB4 LINE L1 2309 5709 -1139 1312 183 33 8 chr1 155821265 155821530 -86842823 + AluJo SINE Alu 39 309 0 3940 185 35 12 chr1 155821535 155822644 -86841709 + L1PB4 LINE L1 5727 6851 -7 207 405 63 0 chr1 155822735 155822846 -86841507 + L2 LINE L2 3139 3256 -16 1870 167 0 0 chr1 155823566 155823848 -86840505 - AluSx SINE Alu -30 282 1 1694 145 84 39 chr1 155824247 155824606 -86839747 + THE1C LTR MaLR 1 375 0 1611 195 13 30 chr1 155824635 155824933 -86839420 + AluJb SINE Alu 1 293 -19 32610 95 10 49 chr1 155825129 155829110 -86835243 - L1PA7 LINE L1 0 6154 2020 2441 62 0 31 chr1 155829110 155829431 -86834922 - AluY SINE Alu 0 311 1 32610 95 10 49 chr1 155829431 155829729 -86834624 - L1PA7 LINE L1 -4134 2020 1712 993 128 0 0 chr1 155829729 155829870 -86834483 - AluSg/x SINE Alu 0 310 170 32610 95 10 49 chr1 155829870 155831850 -86832503 - L1PA7 LINE L1 -4442 1712 11 1601 169 13 42 chr1 155831862 155832169 -86832184 - AluJb SINE Alu -14 298 1 6312 85 52 22 chr1 155833182 155834905 -86829448 - L1PA14 LINE L1 -4 6157 4416 1300 245 14 3 chr1 155834927 155835209 -86829144 + AluJo SINE Alu 3 287 -25 232 298 64 43 chr1 155835867 155835961 -86828392 + MIR SINE MIR 132 227 -35 1632 160 13 42 chr1 155836193 155836499 -86827854 - AluJb SINE Alu -15 297 1 212 0 0 35 chr1 155836560 155836589 -86827764 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 370 256 137 0 chr1 155837012 155837129 -86827224 - MIR SINE MIR -56 206 74 21 36 0 0 chr1 155837574 155837602 -86826751 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr1 155838267 155838314 -86826039 + AT_rich Low_complexity Low_complexity 1 47 0 759 143 8 16 chr1 155839499 155839625 -86824728 - FLAM_C SINE Alu -18 125 1 204 162 29 29 chr1 155839675 155839743 -86824610 + T-rich Low_complexity Low_complexity 4 71 0 2219 115 10 3 chr1 155840091 155840396 -86823957 - AluSx SINE Alu -5 307 1 278 260 164 10 chr1 155840603 155840707 -86823646 - L2 LINE L2 -3 3310 3191 21 71 0 0 chr1 155841415 155841457 -86822896 + AT_rich Low_complexity Low_complexity 1 42 0 492 315 0 0 chr1 155841614 155841763 -86822590 - ERVL LTR ERVL -636 5128 4980 859 238 35 13 chr1 155841807 155842034 -86822319 - MLT1H1 LTR MaLR -2 553 322 239 255 0 0 chr1 155842151 155842198 -86822155 - MLT1H1 LTR MaLR -400 155 109 1077 243 70 17 chr1 155842218 155842518 -86821835 + MLT2B1 LTR ERVL 149 464 -56 326 164 23 125 chr1 155842662 155842790 -86821563 + ERVL LTR ERVL 1 115 -5539 23 0 0 0 chr1 155844646 155844669 -86819684 + AT_rich Low_complexity Low_complexity 1 23 0 1125 273 26 11 chr1 155844669 155845026 -86819327 + ERVL LTR ERVL 104 486 -5201 311 211 11 44 chr1 155845902 155845992 -86818361 - MLT1F LTR MaLR -3 539 453 23685 48 1 0 chr1 155846014 155849475 -86814878 - L1P2 LINE L1 -411 5743 2281 6064 177 67 12 chr1 155850115 155851466 -86812887 - Charlie1a DNA MER1_type -30 1425 1 281 213 47 20 chr1 155852617 155852767 -86811586 + (TA)n Simple_repeat Simple_repeat 2 155 0 1505 178 74 0 chr1 155853195 155853465 -86810888 + AluJo SINE Alu 21 310 -2 21 0 0 0 chr1 155853525 155853546 -86810807 + AT_rich Low_complexity Low_complexity 1 21 0 236 347 29 20 chr1 155853583 155853756 -86810597 - MIR SINE MIR -48 214 6 1287 167 51 121 chr1 155853888 155854277 -86810076 - MLT1A1 LTR MaLR 0 365 4 270 56 0 0 chr1 155854284 155854320 -86810033 + (TG)n Simple_repeat Simple_repeat 1 36 0 217 298 8 23 chr1 155854324 155854455 -86809898 + (TA)n Simple_repeat Simple_repeat 2 130 0 * 231 216 0 0 chr1 155854436 155854487 -86809866 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2856 178 2 8 chr1 155855554 155856042 -86808311 + MER66B LTR ERV1 1 485 -1 234 286 36 36 chr1 155856154 155856238 -86808115 - L2 LINE L2 -37 3276 3193 3624 201 27 8 chr1 155856264 155857044 -86807309 + L1PA16 LINE L1 4553 5347 -799 297 0 0 0 chr1 155857046 155857079 -86807274 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 6614 87 11 1 chr1 155857079 155858016 -86806337 - L1PA10 LINE L1 -21 6147 5203 4975 125 41 15 chr1 155858016 155858046 -86806307 + L1PA16 LINE L1 5336 5364 -802 2062 106 33 0 chr1 155858046 155858321 -86806032 + AluSg SINE Alu 1 284 -26 4975 125 41 15 chr1 155858321 155859099 -86805254 + L1PA16 LINE L1 5364 6165 -1 1193 161 43 0 chr1 155859227 155859457 -86804896 - L1 LINE L1 -1280 4866 4627 325 234 145 55 chr1 155859900 155860045 -86804308 - MIR SINE MIR -57 205 48 250 273 82 36 chr1 155861346 155861456 -86802897 + MLT1I LTR MaLR 57 171 -238 778 289 69 0 chr1 155861827 155862073 -86802280 + HERVL LTR ERVL 3728 3990 -1664 1309 298 63 2 chr1 155862124 155862523 -86801830 + HERVL LTR ERVL 4111 4533 -1231 324 233 53 0 chr1 155862528 155862614 -86801739 + MIR SINE MIR 68 146 -62 6096 146 74 40 chr1 155862615 155863851 -86800502 - MER52C LTR ERV1 0 1278 1 28 0 0 0 chr1 155863852 155863880 -86800473 + AT_rich Low_complexity Low_complexity 1 28 0 472 83 12 24 chr1 155864319 155864403 -86799950 + L1MB8 LINE L1 6096 6178 0 843 179 42 33 chr1 155864663 155864875 -86799478 - MER63 DNA MER1_type -21 1040 827 1679 142 33 36 chr1 155865359 155865661 -86798692 - MSTA LTR MaLR 0 428 128 946 102 0 0 chr1 155865760 155865887 -86798466 - MSTA LTR MaLR -301 127 1 9914 158 23 4 chr1 155865887 155867508 -86796845 - MSTA-int LTR MaLR 0 1651 1 2642 123 28 14 chr1 155867508 155867930 -86796423 - MSTA LTR MaLR 0 428 1 27 29 0 0 chr1 155868552 155868586 -86795767 + AT_rich Low_complexity Low_complexity 1 34 0 189 354 9 26 chr1 155868760 155868873 -86795480 - MIR SINE MIR -132 130 20 289 266 36 86 chr1 155869428 155869567 -86794786 + MIR SINE MIR 66 197 -65 278 265 0 0 chr1 155869664 155869732 -86794621 - MIR SINE MIR -2 260 193 2355 85 7 7 chr1 155869821 155870126 -86794227 - AluSp SINE Alu -8 305 1 1552 176 46 108 chr1 155870839 155870901 -86793452 + LTR37B LTR ERV1 1 65 -403 2565 70 0 6 chr1 155870901 155871213 -86793140 - AluY SINE Alu -1 310 1 1552 176 46 108 chr1 155871213 155871603 -86792750 + LTR37B LTR ERV1 65 423 -45 2075 117 11 14 chr1 155871603 155871905 -86792448 - AluSx SINE Alu 0 301 1 1552 176 46 108 chr1 155871905 155871949 -86792404 + LTR37B LTR ERV1 423 468 0 778 274 133 23 chr1 155872258 155872612 -86791741 - L2 LINE L2 -1 3312 2920 1900 254 135 12 chr1 155872614 155873353 -86791000 - L2 LINE L2 -504 2810 1981 2773 158 16 12 chr1 155873354 155873867 -86790486 + L1MB3 LINE L1 5666 6180 -3 190 167 28 0 chr1 155873902 155873938 -86790415 - L2 LINE L2 -1330 1984 1948 953 269 83 38 chr1 155873938 155874361 -86789992 - MLT1H LTR MaLR -2 547 106 642 261 40 71 chr1 155874427 155874599 -86789754 - L2 LINE L2 -1359 1955 1796 2125 140 0 3 chr1 155874599 155874899 -86789454 + AluSx SINE Alu 1 299 -13 642 261 40 71 chr1 155874899 155875048 -86789305 - L2 LINE L2 -1518 1796 1644 790 176 59 16 chr1 155875051 155875238 -86789115 - MSTB2 LTR MaLR 0 457 263 5810 105 22 27 chr1 155875241 155875856 -86788497 + MER4D LTR ERV1 1 618 -254 2414 103 5 41 chr1 155875856 155876095 -86788258 + THE1A LTR MaLR 1 224 -131 2029 139 10 0 chr1 155876095 155876389 -86787964 + AluSp SINE Alu 3 299 -14 2414 103 5 41 chr1 155876389 155876517 -86787836 + THE1A LTR MaLR 224 355 0 11775 94 10 2 chr1 155876517 155878085 -86786268 + THE1A-int LTR MaLR 1 1580 0 2145 148 17 6 chr1 155878085 155878436 -86785917 + THE1A LTR MaLR 1 355 0 5810 105 22 27 chr1 155878436 155878694 -86785659 + MER4D LTR ERV1 615 871 -1 233 190 127 38 chr1 155878720 155878799 -86785554 - MSTB2 LTR MaLR -280 177 92 2550 219 79 40 chr1 155878899 155879605 -86784748 + MER50 LTR ERV1 1 734 0 4157 200 60 34 chr1 155880222 155881751 -86782602 + L1MCb LINE L1 4 1577 -4850 1544 173 159 4 chr1 155881753 155882100 -86782253 + MLT2B1 LTR ERVL 1 442 -73 380 169 0 12 chr1 155882100 155882183 -86782170 + CT-rich Low_complexity Low_complexity 3 84 0 333 118 0 0 chr1 155882181 155882232 -86782121 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 * 586 281 147 27 chr1 155882261 155882595 -86781758 + MLT1J2 LTR MaLR 69 442 -8 671 189 27 0 chr1 155882791 155882902 -86781451 - FLAM_A SINE Alu -19 114 1 330 288 50 34 chr1 155883191 155883459 -86780894 - MLT1I LTR MaLR -14 581 112 291 28 0 0 chr1 155884311 155884347 -86780006 + (TG)n Simple_repeat Simple_repeat 2 37 0 2197 157 25 75 chr1 155884842 155885325 -86779028 + MER31B LTR ERV1 8 466 0 22 35 0 0 chr1 155885924 155885953 -86778400 + GC_rich Low_complexity Low_complexity 1 29 0 56 67 0 0 chr1 155886169 155886274 -86778079 + GC_rich Low_complexity Low_complexity 1 105 0 25 31 0 0 chr1 155886280 155886312 -86778041 + GC_rich Low_complexity Low_complexity 1 32 0 34 55 0 0 chr1 155886451 155886506 -86777847 + GC_rich Low_complexity Low_complexity 1 55 0 366 326 34 46 chr1 155887022 155887350 -86777003 - L3 LINE CR1 -51 1526 1203 309 257 40 10 chr1 155887871 155887972 -86776381 + L2 LINE L2 3159 3262 -10 272 224 0 93 chr1 155888462 155888569 -86775784 + L1ME3 LINE L1 6068 6162 0 889 170 5 85 chr1 155889244 155889402 -86774951 + MER20 DNA MER1_type 25 163 -56 213 39 0 0 chr1 155889402 155889428 -86774925 + (CA)n Simple_repeat Simple_repeat 1 26 0 889 170 5 85 chr1 155889428 155889481 -86774872 + MER20 DNA MER1_type 163 219 0 475 220 21 28 chr1 155889517 155889658 -86774695 + Charlie2 DNA MER1_type 2434 2573 -289 194 269 104 45 chr1 155889660 155889861 -86774492 - L2 LINE L2 -248 3024 2812 400 263 94 47 chr1 155890025 155890196 -86774157 + MIR SINE MIR 72 250 -12 298 310 77 63 chr1 155891201 155891643 -86772710 - L2 LINE L2 -2 3270 2823 1269 93 0 0 chr1 155891773 155891934 -86772419 + AluSg/x SINE Alu 140 300 -12 716 199 51 28 chr1 155894720 155894896 -86769457 + MER104 DNA MER2_type 1 180 0 306 245 32 11 chr1 155895191 155895285 -86769068 + MIR SINE MIR 59 154 -108 2031 109 41 50 chr1 155897104 155897444 -86766909 + MER1B DNA MER1_type 1 337 0 265 48 0 48 chr1 155901665 155901707 -86762646 + L1PA15 LINE L1 6106 6145 -20 1728 184 3 28 chr1 155902602 155902922 -86761431 + AluJb SINE Alu 1 312 0 2104 112 4 0 chr1 155907237 155907513 -86756840 - AluSx SINE Alu -21 291 15 254 344 104 0 chr1 155907861 155907986 -86756367 - MIR SINE MIR -40 222 85 1624 150 20 30 chr1 155908330 155908630 -86755723 + AluJo SINE Alu 1 297 -15 333 294 109 97 chr1 155910784 155911134 -86753219 + HAL1 LINE L1 6 359 -2148 481 181 237 0 chr1 155911179 155911299 -86753054 - MER45A DNA AcHobo -23 155 10 328 236 116 56 chr1 155911535 155911768 -86752585 + HAL1 LINE L1 790 1036 -1471 232 274 147 25 chr1 155911840 155912044 -86752309 + HAL1 LINE L1 2279 2507 0 2395 64 0 29 chr1 155912090 155912403 -86751950 + AluY SINE Alu 1 304 -7 369 219 66 106 chr1 155912822 155912973 -86751380 + MIR SINE MIR 70 214 -48 2278 120 0 0 chr1 155913294 155913603 -86750750 - AluSx SINE Alu -3 309 1 222 283 0 0 chr1 155913727 155913773 -86750580 - MIR SINE MIR -129 79 34 2032 98 37 24 chr1 155914144 155914439 -86749914 - AluSx SINE Alu -13 299 1 752 166 69 35 chr1 155916462 155916607 -86747746 - FRAM SINE Alu -5 171 22 2447 110 74 11 chr1 155916688 155917052 -86747301 + MLT1B LTR MaLR 4 390 0 1796 172 0 3 chr1 155917109 155917400 -86746953 + AluJo SINE Alu 6 295 -17 207 0 0 0 chr1 155918080 155918103 -86746250 + (TTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 155918393 155918416 -86745937 + AT_rich Low_complexity Low_complexity 1 23 0 205 432 0 0 chr1 155918603 155918677 -86745676 + MIR SINE MIR 32 105 -103 2222 134 60 71 chr1 155918694 155918948 -86745405 + MSTB1 LTR MaLR 1 249 -183 2287 105 0 0 chr1 155918948 155919243 -86745110 + AluSq SINE Alu 1 295 -18 2222 134 60 71 chr1 155919243 155919422 -86744931 + MSTB1 LTR MaLR 249 429 -3 2017 123 0 7 chr1 155919545 155919860 -86744493 + AluSx SINE Alu 1 313 0 2321 82 0 0 chr1 155920619 155920910 -86743443 + AluSg1 SINE Alu 1 291 -18 1294 188 33 18 chr1 155921062 155921334 -86743019 + AluJo SINE Alu 1 276 -36 533 245 164 0 chr1 155921987 155922146 -86742207 + MIR SINE MIR 32 216 -46 21 0 0 0 chr1 155922555 155922576 -86741777 + GC_rich Low_complexity Low_complexity 1 21 0 446 216 210 17 chr1 155923215 155923391 -86740962 + L2 LINE L2 3102 3311 -2 488 281 7 0 chr1 155923737 155923872 -86740481 - L1ME LINE L1 -422 5699 5564 227 227 23 114 chr1 155924036 155924124 -86740229 - L2 LINE L2 -25 3288 3209 3660 108 211 34 chr1 155924757 155925673 -86738680 + LTR12 LTR ERV1 57 714 0 987 191 0 0 chr1 155925693 155925850 -86738503 + FRAM SINE Alu 1 157 -9 270 0 0 0 chr1 155926036 155926066 -86738287 + (T)n Simple_repeat Simple_repeat 1 30 0 4248 126 14 50 chr1 155926519 155926567 -86737786 - L1MB1 LINE L1 0 6168 6120 2189 107 0 10 chr1 155926567 155926858 -86737495 - AluSg SINE Alu -16 294 7 4248 126 14 50 chr1 155926858 155927509 -86736844 - L1MB1 LINE L1 -48 6120 5494 537 166 62 48 chr1 155928209 155928354 -86735999 - Charlie4 DNA MER1_type -1 1960 1814 467 181 32 11 chr1 155928413 155928507 -86735846 - MLT1A2 LTR MaLR 0 374 279 1543 207 0 17 chr1 155929087 155929386 -86734967 - AluJb SINE Alu -18 294 1 848 197 66 58 chr1 155929438 155929697 -86734656 + MIR SINE MIR 2 262 0 424 297 41 55 chr1 155929709 155929880 -86734473 - L1M4 LINE L1 -1843 4303 4136 986 183 118 0 chr1 155929880 155930066 -86734287 + MER3 DNA MER1_type 1 208 -1 424 297 41 55 chr1 155930066 155930187 -86734166 - L1M4 LINE L1 -2010 4136 4015 1319 204 63 63 chr1 155930209 155930572 -86733781 - MLT2B2 LTR ERVL -13 502 140 506 289 64 17 chr1 155931588 155931761 -86732592 - MIR SINE MIR -56 206 26 688 254 68 42 chr1 155931797 155932033 -86732320 - MIR SINE MIR -19 243 2 216 158 0 0 chr1 155932336 155932374 -86731979 + CT-rich Low_complexity Low_complexity 2 39 0 1609 193 3 10 chr1 155932416 155932711 -86731642 - AluJo SINE Alu -19 293 1 789 202 42 15 chr1 155933648 155933823 -86730530 + MER5B DNA MER1_type 1 162 -16 2203 97 0 40 chr1 155934220 155934541 -86729812 + AluSg SINE Alu 1 308 -2 211 323 92 0 chr1 155935545 155935610 -86728743 + L2 LINE L2 3239 3309 -4 1027 296 56 29 chr1 155936067 155936625 -86727728 + L1MC4a LINE L1 5260 5832 -1976 1705 102 12 12 chr1 155936820 155937065 -86727288 + L1PB1 LINE L1 5905 6149 -2 406 262 82 22 chr1 155937330 155937513 -86726840 - L1ME LINE L1 -312 5809 5616 1078 257 160 32 chr1 155937772 155938204 -86726149 + LTR16C LTR ERVL 4 490 -1 2067 92 52 0 chr1 155938609 155938926 -86725427 - AluSx SINE Alu 0 331 1 463 261 151 14 chr1 155938982 155939138 -86725215 - LTR33A LTR ERVL -122 399 266 2045 204 10 69 chr1 155939138 155939632 -86724721 + MLT1C LTR MaLR 1 465 -2 463 261 151 14 chr1 155939632 155939765 -86724588 - LTR33A LTR ERVL -255 266 38 215 373 32 25 chr1 155939949 155940107 -86724246 - MIR3 SINE MIR -22 186 28 342 239 35 71 chr1 155940419 155940532 -86723821 - L2 LINE L2 -23 3290 3182 4827 140 33 3 chr1 155940700 155941457 -86722896 - L1MC1 LINE L1 0 6333 5554 197 265 191 0 chr1 155941863 155941931 -86722422 - L2 LINE L2 -42 3230 3150 1191 217 86 58 chr1 155942182 155942711 -86721642 - MER39 LTR ERV1 0 707 1 184 285 32 113 chr1 155942751 155942937 -86721416 - L2 LINE L2 -296 2976 2806 293 229 42 21 chr1 155943008 155943104 -86721249 + Charlie5 DNA MER1_type 35 132 -2480 180 0 0 0 chr1 155943104 155943124 -86721229 + (TA)n Simple_repeat Simple_repeat 2 21 0 609 199 19 26 chr1 155943126 155943194 -86721159 + Charlie5 DNA MER1_type 2431 2498 -87 2319 104 3 0 chr1 155943194 155943493 -86720860 - AluSq SINE Alu -13 300 1 609 199 19 26 chr1 155943493 155943580 -86720773 + Charlie5 DNA MER1_type 2498 2585 0 477 385 30 11 chr1 155943591 155943861 -86720492 - L2 LINE L2 -557 2757 2483 431 211 38 60 chr1 155943881 155944014 -86720339 + MER77 LTR ERV1 66 195 -410 * 1711 255 42 68 chr1 155943989 155944636 -86719717 + MER21B LTR ERV1 98 727 -136 295 322 89 0 chr1 155944709 155944855 -86719498 - L2 LINE L2 -951 2363 2205 1509 205 3 7 chr1 155945336 155945624 -86718729 + AluJo SINE Alu 1 287 -25 2418 102 0 3 chr1 155945668 155945981 -86718372 + AluSx SINE Alu 1 312 0 194 267 67 0 chr1 155945982 155946027 -86718326 - L2 LINE L2 -82 3190 3143 323 270 200 9 chr1 155946507 155946622 -86717731 + MER5A DNA MER1_type 29 165 -24 521 338 12 0 chr1 155947104 155947264 -86717089 - MIR SINE MIR -93 169 8 1914 98 4 0 chr1 155948464 155948718 -86715635 - AluSp SINE Alu -58 255 1 865 328 73 8 chr1 155949378 155949762 -86714591 + L2 LINE L2 2379 2787 -527 579 256 116 23 chr1 155949767 155950197 -86714156 - MLT1J2 LTR MaLR -4 442 3 954 302 59 43 chr1 155950197 155950713 -86713640 + L2 LINE L2 2782 3304 -9 414 278 40 0 chr1 155950738 155950864 -86713489 - L3 LINE CR1 -688 889 759 301 287 24 81 chr1 155951081 155951227 -86713126 + MIR SINE MIR 10 141 -67 255 351 46 84 chr1 155952798 155953037 -86711316 - L2 LINE L2 -98 3174 2945 27 81 0 0 chr1 155954247 155954309 -86710044 + AT_rich Low_complexity Low_complexity 1 62 0 1935 180 19 25 chr1 155954698 155955065 -86709288 - MLT1A1 LTR MaLR 0 365 1 438 266 138 91 chr1 155955531 155956080 -86708273 + MLT1K LTR MaLR 14 588 0 618 104 0 0 chr1 155956269 155956365 -86707988 + (TA)n Simple_repeat Simple_repeat 2 97 0 803 153 19 19 chr1 155957463 155957620 -86706733 - BC200 scRNA scRNA -43 157 1 1091 274 63 37 chr1 155958038 155958902 -86705451 + L1MEd LINE L1 683 1567 -4562 24 32 0 0 chr1 155959010 155959041 -86705312 + AT_rich Low_complexity Low_complexity 1 31 0 1816 151 16 16 chr1 155960393 155960704 -86703649 + AluJo SINE Alu 1 311 -1 200 292 95 36 chr1 155961973 155962110 -86702243 + MER5A DNA MER1_type 44 188 -1 192 356 0 17 chr1 155962967 155963026 -86701327 + L2 LINE L2 3129 3186 -86 357 221 29 58 chr1 155964272 155964376 -86699977 - MLT1H LTR MaLR -75 474 374 627 197 94 96 chr1 155964416 155964657 -86699696 - MLT1H LTR MaLR -259 290 5 303 318 88 0 chr1 155968538 155968686 -86695667 + MIR SINE MIR 90 250 -12 886 132 7 22 chr1 155968694 155968830 -86695523 + FLAM_C SINE Alu 1 134 -9 526 278 38 75 chr1 155969857 155970069 -86694284 + MER115 DNA AcHobo 44 247 -446 26 0 0 0 chr1 155970709 155970735 -86693618 + AT_rich Low_complexity Low_complexity 1 26 0 976 208 26 44 chr1 155971112 155971291 -86693062 - MER58A DNA MER1_type -2197 223 47 1990 147 0 3 chr1 155971291 155971583 -86692770 + AluJo SINE Alu 1 291 -21 976 208 26 44 chr1 155971583 155971629 -86692724 - MER58A DNA MER1_type -2373 47 2 339 242 227 0 chr1 155971937 155972069 -86692284 + MIR3 SINE MIR 41 202 -6 360 297 206 7 chr1 155972167 155972322 -86692031 + MIR3 SINE MIR 20 205 -3 524 279 107 0 chr1 155974689 155974886 -86689467 - MIR SINE MIR -5 257 40 209 284 0 30 chr1 155976033 155976100 -86688253 + L2 LINE L2 3200 3264 -8 438 268 80 0 chr1 155976163 155976275 -86688078 + L2 LINE L2 3140 3260 -12 207 69 0 0 chr1 155976278 155976307 -86688046 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 26 0 0 0 chr1 155976439 155976465 -86687888 + AT_rich Low_complexity Low_complexity 1 26 0 1220 316 120 38 chr1 155978124 155979158 -86685195 - L2 LINE L2 -640 2674 1556 421 228 349 5 chr1 155979646 155979835 -86684518 + MLT1L LTR MaLR 8 261 -354 393 305 42 30 chr1 155979899 155980066 -86684287 + MLT1L LTR MaLR 355 523 -92 230 364 21 7 chr1 155981245 155981385 -86682968 + L2 LINE L2 2906 3047 -225 465 223 47 27 chr1 155987138 155987286 -86677067 - Charlie5 DNA MER1_type 0 2624 2474 439 286 60 30 chr1 155988522 155988655 -86675698 + MIR3 SINE MIR 18 154 -54 705 197 8 0 chr1 155988677 155988804 -86675549 - MER94 DNA DNA -6 128 1 896 288 49 12 chr1 155988841 155989168 -86675185 - MER102b DNA MER1_type -2 339 1 2765 33 0 0 chr1 155989769 155990075 -86674278 + AluY SINE Alu 1 306 -5 209 33 33 0 chr1 155990842 155990872 -86673481 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 485 279 58 17 chr1 155993110 155993282 -86671071 - MIR3 SINE MIR 0 208 30 664 182 15 15 chr1 155994810 155994942 -86669411 - MER94 DNA DNA -2 132 1 246 291 36 18 chr1 155995451 155995561 -86668792 - MIR SINE MIR -72 190 79 1005 176 28 32 chr1 155995650 155995866 -86668487 - MER20 DNA MER1_type -4 215 1 22 56 0 0 chr1 155996033 155996069 -86668284 + AT_rich Low_complexity Low_complexity 1 36 0 288 0 0 0 chr1 155997285 155997317 -86667036 + (CA)n Simple_repeat Simple_repeat 2 33 0 1119 205 44 73 chr1 155997745 155998087 -86666266 + MLT1K LTR MaLR 257 588 0 290 209 77 11 chr1 155998090 155998181 -86666172 + HAL1b LINE L1 1245 1341 -7 242 324 123 35 chr1 155998328 155998498 -86665855 - L3b LINE CR1 -90 1493 1309 582 249 82 68 chr1 156000399 156000692 -86663661 - L3 LINE CR1 -111 1466 1170 1851 136 24 10 chr1 156001887 156002181 -86662172 + AluSx SINE Alu 5 302 -10 227 226 97 0 chr1 156003483 156003545 -86660808 + L1ME3 LINE L1 6004 6071 -91 1866 163 171 11 chr1 156004836 156005205 -86659148 + MSTA LTR MaLR 1 428 0 383 380 44 32 chr1 156005207 156005765 -86658588 + L2 LINE L2 2481 3054 -218 209 257 54 0 chr1 156007001 156007075 -86657278 + MIR SINE MIR 99 176 -86 690 150 0 9 chr1 156007659 156007772 -86656581 - L1PA15 LINE L1 0 6165 6054 22 0 0 0 chr1 156007990 156008012 -86656341 + AT_rich Low_complexity Low_complexity 1 22 0 777 302 103 0 chr1 156008036 156008268 -86656085 + MIR SINE MIR 5 260 -2 766 274 39 35 chr1 156009819 156010049 -86654304 - MIR SINE MIR -21 241 11 400 300 115 29 chr1 156010035 156010278 -86654075 + L2 LINE L2 2562 2825 -489 * 27 0 0 0 chr1 156010691 156010718 -86653635 + AT_rich Low_complexity Low_complexity 1 27 0 240 336 53 0 chr1 156010977 156011090 -86653263 + L2 LINE L2 3154 3272 0 2008 134 31 22 chr1 156011734 156012091 -86652262 - MER46B DNA MER2_type -1 235 1 1470 123 9 9 chr1 156012124 156012351 -86652002 - AluSg/x SINE Alu -3 307 81 423 246 8 37 chr1 156012734 156012868 -86651485 + LTR67 LTR ERVL 402 531 -26 290 295 84 0 chr1 156013454 156013549 -86650804 + L2 LINE L2 2238 2340 -974 664 244 54 32 chr1 156013576 156013797 -86650556 + MLT1J LTR MaLR 39 264 -247 214 204 20 0 chr1 156013948 156013997 -86650356 + GA-rich Low_complexity Low_complexity 1 50 0 524 314 106 30 chr1 156014000 156014033 -86650320 + L2 LINE L2 2356 2385 -887 1949 150 4 0 chr1 156014033 156014335 -86650018 + AluSx SINE Alu 1 303 0 524 314 106 30 chr1 156014335 156014961 -86649392 + L2 LINE L2 2385 3077 -195 557 236 23 159 chr1 156015179 156015530 -86648823 + MLT1I LTR MaLR 81 383 -26 428 218 35 0 chr1 156015569 156015656 -86648697 - MIR SINE MIR -16 246 157 213 328 109 25 chr1 156016431 156016550 -86647803 + MIR SINE MIR 90 218 -44 402 294 219 6 chr1 156017006 156017166 -86647187 - MIR3 SINE MIR -1 207 14 245 322 103 51 chr1 156017648 156017862 -86646491 + L2 LINE L2 3044 3268 -4 1865 156 3 10 chr1 156018020 156018315 -86646038 - AluJb SINE Alu -13 299 7 307 353 60 0 chr1 156018342 156018458 -86645895 + L2 LINE L2 3190 3312 -1 2199 135 0 0 chr1 156018488 156018799 -86645554 + AluSx SINE Alu 1 311 -1 198 103 0 0 chr1 156019051 156019080 -86645273 + (CAA)n Simple_repeat Simple_repeat 2 30 0 320 275 11 11 chr1 156019247 156019338 -86645015 + GA-rich Low_complexity Low_complexity 2 92 0 328 235 173 62 chr1 156019856 156020035 -86644318 + MIR3 SINE MIR 5 203 -5 246 81 0 0 chr1 156021595 156021632 -86642721 + (CA)n Simple_repeat Simple_repeat 1 37 0 311 286 204 44 chr1 156021902 156022220 -86642133 + L1M2 LINE L1 869 1237 -5612 309 243 226 74 chr1 156021905 156022272 -86642081 - L1M2 LINE L1 -5921 928 506 * 26 30 0 0 chr1 156022287 156022320 -86642033 + GC_rich Low_complexity Low_complexity 1 33 0 194 286 89 0 chr1 156022900 156022956 -86641397 - L2 LINE L2 -51 3221 3161 296 256 22 0 chr1 156023736 156023826 -86640527 + LTR67 LTR ERVL 434 525 -32 456 250 83 25 chr1 156023960 156024080 -86640273 - MIR SINE MIR -116 146 20 2002 146 11 0 chr1 156024230 156024517 -86639836 + AluJb SINE Alu 1 290 -22 487 267 51 34 chr1 156025060 156025236 -86639117 + MER5A DNA MER1_type 8 186 -3 180 0 0 0 chr1 156026122 156026142 -86638211 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 321 214 95 63 chr1 156026485 156026576 -86637777 + L1ME4a LINE L1 5959 6057 -64 1907 143 0 29 chr1 156026576 156026884 -86637469 - AluJo SINE Alu -13 299 1 321 214 95 63 chr1 156026884 156026918 -86637435 + L1ME4a LINE L1 6057 6088 -33 189 107 0 0 chr1 156027244 156027272 -86637081 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 243 236 36 0 chr1 156027902 156027957 -86636396 - L2 LINE L2 0 3272 3216 560 261 45 6 chr1 156028861 156029037 -86635316 + MIR SINE MIR 69 251 -11 192 77 0 0 chr1 156029041 156029067 -86635286 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1273 248 81 32 chr1 156029243 156029787 -86634566 + L2 LINE L2 2738 3312 -1 1271 221 60 25 chr1 156029788 156030141 -86634212 + L2 LINE L2 2011 2375 -939 2128 136 0 0 chr1 156030283 156030578 -86633775 + AluJb SINE Alu 6 300 -12 679 314 124 36 chr1 156030656 156030952 -86633401 + L2 LINE L2 2368 2637 -676 860 142 25 0 chr1 156030952 156031114 -86633239 + L1MA8 LINE L1 6125 6290 -1 679 314 124 36 chr1 156031114 156031462 -86632891 + L2 LINE L2 2637 3068 -245 237 32 0 0 chr1 156031568 156031599 -86632754 + HSMAR1 DNA Mariner 1257 1287 0 3159 236 31 54 chr1 156031603 156032766 -86631587 + L1MEc LINE L1 100 1235 -5161 461 230 54 7 chr1 156032776 156032924 -86631429 + L1MA10 LINE L1 6180 6334 0 714 265 140 20 chr1 156033106 156033499 -86630854 + L1MEc LINE L1 2934 3373 -2842 324 0 0 0 chr1 156033504 156033540 -86630813 + (TG)n Simple_repeat Simple_repeat 2 37 0 275 252 73 26 chr1 156033582 156033608 -86630745 - L1MA10 LINE L1 -1 6333 6308 1882 228 127 5 chr1 156033608 156034182 -86630171 - L1ME1 LINE L1 -26 6140 5497 387 288 133 32 chr1 156034391 156034626 -86629727 + L1MEc LINE L1 3680 3955 -2260 1933 147 3 3 chr1 156034626 156034932 -86629421 + AluJb SINE Alu 1 306 -6 387 288 133 32 chr1 156034932 156035005 -86629348 + L1MEc LINE L1 3955 4019 -2196 22 56 0 0 chr1 156035208 156035244 -86629109 + AT_rich Low_complexity Low_complexity 1 36 0 303 257 50 40 chr1 156035420 156035521 -86628832 + L2 LINE L2 3141 3242 -30 200 188 42 21 chr1 156036417 156036465 -86627888 + L2 LINE L2 3224 3272 0 241 197 82 16 chr1 156036669 156036730 -86627623 + MIR3 SINE MIR 135 199 -9 2049 121 7 16 chr1 156036931 156037236 -86627117 + AluSq SINE Alu 1 302 -11 1075 110 128 13 chr1 156038340 156038567 -86625786 + L1MA7 LINE L1 6039 6291 0 421 240 191 4 chr1 156039750 156039910 -86624443 + MIR SINE MIR 62 243 -19 2153 114 0 7 chr1 156041225 156041524 -86622829 - AluSc SINE Alu -8 301 5 198 0 0 0 chr1 156041533 156041555 -86622798 + (T)n Simple_repeat Simple_repeat 1 22 0 2133 111 7 3 chr1 156041799 156042097 -86622256 - AluSp SINE Alu -13 300 2 26 0 0 0 chr1 156042233 156042259 -86622094 + AT_rich Low_complexity Low_complexity 1 26 0 1375 111 25 60 chr1 156043356 156043389 -86620964 + MER30 DNA MER1_type 4 37 -193 2352 85 0 3 chr1 156043389 156043684 -86620669 - AluSg SINE Alu -16 294 1 1375 111 25 60 chr1 156043684 156043885 -86620468 + MER30 DNA MER1_type 37 230 0 447 291 67 40 chr1 156043917 156044092 -86620261 - L1ME1 LINE L1 -808 5338 5169 870 228 0 0 chr1 156044092 156044259 -86620094 - FAM SINE Alu -4 171 5 447 291 67 40 chr1 156044259 156044606 -86619747 - L1ME1 LINE L1 -977 5169 4802 273 247 82 36 chr1 156044755 156044974 -86619379 - L1ME1 LINE L1 -1569 4577 4349 13818 126 34 19 chr1 156045245 156047354 -86616999 + Tigger1 DNA MER2_type 1 2150 -268 4098 88 10 34 chr1 156047354 156047977 -86616376 + L1PB1 LINE L1 5542 6149 -2 13818 126 34 19 chr1 156047977 156048246 -86616107 + Tigger1 DNA MER2_type 2150 2414 -4 333 230 93 39 chr1 156048285 156048353 -86616000 - L1ME1 LINE L1 -2214 3932 3869 1934 158 7 0 chr1 156048353 156048638 -86615715 - AluSx SINE Alu -25 287 1 333 230 93 39 chr1 156048638 156048773 -86615580 - L1ME1 LINE L1 -2277 3869 3718 27 0 0 0 chr1 156049334 156049361 -86614992 + AT_rich Low_complexity Low_complexity 1 27 0 792 179 30 0 chr1 156049674 156049808 -86614545 - FRAM SINE Alu -39 137 1 210 330 106 50 chr1 156050451 156050630 -86613723 + MIR SINE MIR 47 235 -27 595 232 104 5 chr1 156052073 156052293 -86612060 - HsTC2a DNA Tc2 -5 737 496 5398 202 60 32 chr1 156052293 156052517 -86611836 - L1MC4 LINE L1 -1 8041 7825 893 116 0 0 chr1 156052517 156052638 -86611715 + 5S rRNA rRNA 1 121 0 186 103 0 0 chr1 156052641 156052670 -86611683 + (TG)n Simple_repeat Simple_repeat 2 30 0 5398 202 60 32 chr1 156052670 156053152 -86611201 - L1MC4 LINE L1 -218 7824 7357 330 26 0 0 chr1 156053160 156053199 -86611154 + (TA)n Simple_repeat Simple_repeat 2 40 0 2225 112 0 10 chr1 156053199 156053494 -86610859 - AluSx SINE Alu -18 294 1 5398 202 60 32 chr1 156053494 156054112 -86610241 - L1MC4 LINE L1 -685 7357 6663 387 41 0 0 chr1 156054112 156054161 -86610192 + (TG)n Simple_repeat Simple_repeat 2 50 0 5398 202 60 32 chr1 156054161 156054333 -86610020 - L1MC4 LINE L1 -1379 6663 6497 263 333 26 0 chr1 156054631 156054787 -86609566 - L1M4 LINE L1 -1549 4597 4438 543 301 131 47 chr1 156054788 156055727 -86608626 - L1ME1 LINE L1 -2616 3530 2492 480 320 107 40 chr1 156055767 156056339 -86608014 - HAL1b LINE L1 -712 1586 85 1586 144 93 37 chr1 156056536 156056891 -86607462 + THE1C LTR MaLR 1 375 0 1618 203 0 10 chr1 156056975 156057293 -86607060 - AluJo SINE Alu 0 312 1 1492 220 76 21 chr1 156058006 156058429 -86605924 - HsTC2a DNA Tc2 -298 446 1 860 309 126 16 chr1 156058998 156059444 -86604909 - L2 LINE L2 -1 3312 2818 268 340 64 21 chr1 156059489 156059630 -86604723 - L2 LINE L2 -748 2566 2420 267 231 99 33 chr1 156059760 156059851 -86604502 - L2 LINE L2 -50 3222 3126 389 273 84 14 chr1 156060191 156060334 -86604019 - HAL1 LINE L1 -1608 899 747 261 281 81 81 chr1 156060638 156060823 -86603530 - HAL1 LINE L1 -2319 188 4 1775 116 0 4 chr1 156061287 156061529 -86602824 + AluSx SINE Alu 2 242 -70 255 203 87 0 chr1 156061536 156061605 -86602748 + HAL1 LINE L1 825 899 -1608 559 321 29 32 chr1 156062188 156062503 -86601850 + L2 LINE L2 3000 3313 0 6354 96 14 7 chr1 156062960 156063837 -86600516 + L1MA2 LINE L1 5422 6304 0 552 305 72 8 chr1 156064948 156065184 -86599169 + MIR SINE MIR 9 259 -3 1014 212 78 55 chr1 156065217 156065562 -86598791 + L1ME1 LINE L1 5811 6163 -3 3502 271 100 62 chr1 156065613 156065635 -86598718 + L2 LINE L2 38 58 -3256 1258 171 38 5 chr1 156065635 156065846 -86598507 + MER20 DNA MER1_type 1 218 -1 3502 271 100 62 chr1 156065846 156067497 -86596856 + L2 LINE L2 58 1775 -1539 242 303 56 11 chr1 156069382 156069471 -86594882 - MIR SINE MIR -150 112 20 1645 189 0 0 chr1 156069692 156069973 -86594380 + AluJo SINE Alu 9 289 -23 23 0 0 0 chr1 156070117 156070140 -86594213 + AT_rich Low_complexity Low_complexity 1 23 0 279 361 143 0 chr1 156070695 156070814 -86593539 - L2 LINE L2 -1 3271 3136 3000 178 88 43 chr1 156070814 156071011 -86593342 + L1MB3 LINE L1 4749 4936 -1248 1461 198 36 98 chr1 156071011 156071400 -86592953 + MLT1A1 LTR MaLR 1 365 0 3000 178 88 43 chr1 156071400 156072398 -86591955 + L1MB3 LINE L1 4936 6007 -177 400 153 82 0 chr1 156072417 156072502 -86591851 + L1MB3 LINE L1 6090 6181 -2 799 236 38 21 chr1 156072544 156072781 -86591572 - L2 LINE L2 -2354 960 720 6509 122 24 6 chr1 156072781 156074112 -86590241 + L1PB1 LINE L1 4801 6151 0 2246 254 49 47 chr1 156074123 156074534 -86589819 - L2 LINE L2 -2577 737 323 2010 164 0 0 chr1 156074534 156074845 -86589508 + AluJb SINE Alu 1 311 -1 2246 254 49 47 chr1 156074845 156075130 -86589223 - L2 LINE L2 -2991 323 40 629 269 155 51 chr1 156075428 156075764 -86588589 + L1MEd LINE L1 561 861 -1629 5735 68 46 17 chr1 156075764 156076990 -86587363 + SVA Other Other 11 1386 0 629 269 155 51 chr1 156076990 156077516 -86586837 + L1MEd LINE L1 861 1622 -868 556 311 67 57 chr1 156077691 156078201 -86586152 + L1MEd LINE L1 1806 2302 -3827 2070 125 3 13 chr1 156078201 156078514 -86585839 + AluSg SINE Alu 1 310 0 556 311 67 57 chr1 156078514 156079003 -86585350 + L1MEd LINE L1 2302 2785 -3344 643 287 99 20 chr1 156079068 156079657 -86584696 + L1MEd LINE L1 2904 3534 -2595 354 257 80 0 chr1 156079680 156079793 -86584560 + L1MEd LINE L1 3749 3870 -2259 589 151 140 0 chr1 156079793 156079886 -86584467 + FLAM_A SINE Alu 11 116 -26 198 103 0 0 chr1 156080148 156080177 -86584176 + (A)n Simple_repeat Simple_repeat 1 29 0 1201 195 57 73 chr1 156081106 156081490 -86582863 - MER39 LTR ERV1 -19 688 311 4209 248 108 36 chr1 156081495 156082971 -86581382 + L2 LINE L2 548 2130 -1184 445 268 18 15 chr1 156082971 156083097 -86581256 + MLT1C LTR MaLR 356 467 0 1029 258 92 37 chr1 156083120 156083597 -86580756 + L2 LINE L2 2736 3242 -71 4952 151 35 8 chr1 156083604 156085048 -86579305 - L1MA4A LINE L1 -20 6280 4749 215 219 188 0 chr1 156085048 156085112 -86579241 + L2 LINE L2 3233 3308 -5 252 143 0 0 chr1 156085114 156085156 -86579197 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1937 204 77 125 chr1 156085245 156086418 -86577935 - L1MC5 LINE L1 -26 7935 6820 1216 134 22 22 chr1 156086421 156086653 -86577700 - L1M1 LINE L1 -811 5492 5261 531 269 115 76 chr1 156086641 156086764 -86577589 - L1MC4a LINE L1 -1007 6801 6684 * 2626 203 93 35 chr1 156086764 156087331 -86577022 + MER77 LTR ERV1 3 602 -3 531 269 115 76 chr1 156087331 156087694 -86576659 - L1MC4a LINE L1 -1124 6684 6296 1484 164 0 4 chr1 156087700 156087938 -86576415 + AluJb SINE Alu 1 237 -75 180 0 0 0 chr1 156087952 156087972 -86576381 + (A)n Simple_repeat Simple_repeat 1 20 0 598 131 40 20 chr1 156087986 156088085 -86576268 + U13 snRNA snRNA 4 104 0 33 25 0 0 chr1 156088194 156088234 -86576119 + AT_rich Low_complexity Low_complexity 1 40 0 1867 234 55 60 chr1 156088381 156089031 -86575322 - L1MC4a LINE L1 -668 5637 5297 413 210 12 0 chr1 156089247 156089328 -86575025 - L2 LINE L2 0 3313 3232 453 305 45 13 chr1 156090138 156090292 -86574061 + MIR SINE MIR 37 195 -67 1961 80 0 0 chr1 156091830 156092068 -86572285 + AluSq SINE Alu 3 240 -73 499 235 50 56 chr1 156093339 156093518 -86570835 + LTR16C LTR ERVL 149 326 -165 236 278 111 0 chr1 156093598 156093670 -86570683 + LTR16C LTR ERVL 412 491 0 281 254 18 36 chr1 156093681 156093791 -86570562 + L1MEd LINE L1 1081 1188 -5017 492 204 187 24 chr1 156094849 156095120 -86569233 + L1MEd LINE L1 2135 2395 -3820 438 226 40 8 chr1 156095130 156095254 -86569099 + L1MEd LINE L1 2444 2571 -3644 * 1377 211 69 12 chr1 156095251 156095672 -86568681 + L1M4 LINE L1 4363 4807 -1339 416 308 38 23 chr1 156096111 156096244 -86568109 + MIR SINE MIR 16 150 -58 357 248 56 89 chr1 156096279 156096493 -86567860 + MLT1J2 LTR MaLR 27 233 -217 702 188 87 7 chr1 156097309 156097458 -86566895 + MIR SINE MIR 81 241 -21 1187 49 56 0 chr1 156097571 156097715 -86566638 + L1PA8 LINE L1 6008 6159 -13 198 0 0 0 chr1 156097718 156097740 -86566613 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 576 283 91 30 chr1 156098232 156098497 -86565856 + L2 LINE L2 2992 3272 0 249 260 193 72 chr1 156098739 156098920 -86565433 - L2 LINE L2 -2 3270 3068 26 30 0 0 chr1 156099448 156099481 -86564872 + AT_rich Low_complexity Low_complexity 1 33 0 235 318 24 0 chr1 156100416 156100501 -86563852 - L2 LINE L2 -1 3312 3226 729 242 57 35 chr1 156102574 156102801 -86561552 + MIR SINE MIR 17 248 -14 409 102 54 30 chr1 156102957 156103124 -86561229 + (TG)n Simple_repeat Simple_repeat 1 171 0 555 51 63 40 chr1 156103267 156103442 -86560911 + (TG)n Simple_repeat Simple_repeat 1 179 0 237 145 40 53 chr1 156103446 156103522 -86560831 + (GTGTG)n Simple_repeat Simple_repeat 1 75 0 514 46 69 46 chr1 156103522 156103696 -86560657 + (TG)n Simple_repeat Simple_repeat 2 179 0 271 323 100 9 chr1 156104397 156104527 -86559826 - MIR SINE MIR -71 191 51 2168 124 0 0 chr1 156104582 156104872 -86559481 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr1 156104918 156104954 -86559399 + AT_rich Low_complexity Low_complexity 1 36 0 238 399 40 29 chr1 156104982 156105155 -86559198 - L2 LINE L2 -60 3212 3038 391 147 63 32 chr1 156105156 156105251 -86559102 - L1ME4a LINE L1 -65 6056 5959 1860 154 20 7 chr1 156106735 156107040 -86557313 - AluJb SINE Alu -3 309 1 935 240 100 0 chr1 156107627 156107856 -86556497 - MIR SINE MIR 0 262 11 2375 32 0 25 chr1 156108252 156108533 -86555820 - AluY SINE Alu -3 308 35 1827 140 0 18 chr1 156108830 156109185 -86555168 - AluJb SINE Alu 0 351 2 204 40 0 0 chr1 156109308 156109333 -86555020 + (T)n Simple_repeat Simple_repeat 1 25 0 251 194 65 0 chr1 156109735 156109797 -86554556 - MIR SINE MIR -48 214 149 2043 76 69 4 chr1 156109811 156110086 -86554267 + AluSx SINE Alu 1 293 -19 1687 108 0 4 chr1 156110740 156110980 -86553373 + AluSq SINE Alu 75 313 0 409 185 167 9 chr1 156110999 156111107 -86553246 - MIR3 SINE MIR -73 135 11 286 209 105 47 chr1 156111120 156111206 -86553147 + MIR3 SINE MIR 67 157 -51 417 212 358 0 chr1 156111206 156111357 -86552996 - MER58C DNA MER1_type -10 205 1 511 279 173 33 chr1 156111741 156112106 -86552247 - L2 LINE L2 -5 3267 2852 212 233 33 0 chr1 156113683 156113743 -86550610 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 204 125 0 0 chr1 156113804 156113836 -86550517 + (CTTG)n Simple_repeat Simple_repeat 4 35 0 541 162 57 0 chr1 156113836 156113941 -86550412 - AluJb SINE Alu -19 293 183 288 0 0 0 chr1 156113941 156113973 -86550380 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 542 97 280 0 chr1 156113973 156114066 -86550287 - FLAM_C SINE Alu -23 120 2 477 287 59 61 chr1 156114229 156114537 -86549816 + L1MC4a LINE L1 5647 5800 -362 232 167 56 14 chr1 156114743 156114815 -86549538 + (TTAAA)n Simple_repeat Simple_repeat 4 78 0 356 272 128 3 chr1 156114938 156115045 -86549308 + MIR3 SINE MIR 78 194 -14 31 44 0 0 chr1 156115973 156116018 -86548335 + AT_rich Low_complexity Low_complexity 1 45 0 301 250 0 0 chr1 156116149 156116209 -86548144 - L2 LINE L2 0 3272 3213 799 302 37 12 chr1 156116308 156116553 -86547800 + MIR SINE MIR 12 262 0 389 288 34 17 chr1 156116671 156116789 -86547564 - L2 LINE L2 -182 3090 2971 992 255 17 17 chr1 156116972 156117207 -86547146 - MIR SINE MIR -1 261 27 386 331 157 40 chr1 156117322 156118040 -86546313 - L2 LINE L2 -652 2662 1861 212 288 200 25 chr1 156118091 156118171 -86546182 - MER91A DNA MER1_type -17 179 86 737 279 151 58 chr1 156118952 156119741 -86544612 + L1MC4a LINE L1 5369 6230 -1578 516 314 117 0 chr1 156120434 156120622 -86543731 + MIR SINE MIR 43 252 -10 876 242 99 18 chr1 156120794 156121285 -86543068 + MLT1G1 LTR MaLR 21 595 0 3268 258 105 43 chr1 156121290 156121572 -86542781 - L2 LINE L2 -323 2990 2727 2131 85 27 0 chr1 156121572 156121866 -86542487 - AluSx SINE Alu -10 302 1 3268 258 105 43 chr1 156121866 156123074 -86541279 - L2 LINE L2 -586 2727 1410 2100 121 3 3 chr1 156123589 156123895 -86540458 + AluSx SINE Alu 1 306 -6 375 301 23 75 chr1 156124477 156124650 -86539703 - MIR SINE MIR -37 225 62 510 314 164 9 chr1 156125374 156125600 -86538753 + MIR SINE MIR 2 262 0 1903 132 30 0 chr1 156125876 156126179 -86538174 + AluSx SINE Alu 1 312 0 430 294 63 63 chr1 156126283 156126552 -86537801 - L3b LINE CR1 -147 1436 1168 789 282 39 16 chr1 156127169 156127424 -86536929 + MIR SINE MIR 1 261 -1 313 261 11 65 chr1 156127446 156127538 -86536815 + L2 LINE L2 3186 3272 0 380 278 105 43 chr1 156128781 156128990 -86535363 + L1ME4a LINE L1 5873 6094 -27 180 276 35 0 chr1 156129109 156129167 -86535186 + L3b LINE CR1 1274 1333 -250 612 327 80 30 chr1 156130116 156130489 -86533864 - L2 LINE L2 -3 3269 2878 657 305 70 21 chr1 156130751 156131079 -86533274 - L2 LINE L2 -513 2801 2458 843 263 156 10 chr1 156131079 156131553 -86532800 + MLT1F LTR MaLR 1 534 -8 1005 315 60 17 chr1 156131560 156132040 -86532313 - L2 LINE L2 -852 2462 1962 625 219 192 0 chr1 156132213 156132364 -86531989 + MER5A DNA MER1_type 4 183 -6 628 249 35 24 chr1 156132510 156132679 -86531674 - MER5B DNA MER1_type -7 171 1 484 250 55 93 chr1 156133964 156134192 -86530161 - MIR SINE MIR -4 258 41 545 151 0 109 chr1 156134241 156134309 -86530044 - MER97a DNA MER1_type? -716 178 104 1918 101 15 4 chr1 156134309 156134576 -86529777 + AluSg SINE Alu 10 279 -31 198 0 0 0 chr1 156134576 156134598 -86529755 + (CA)n Simple_repeat Simple_repeat 1 22 0 545 151 0 109 chr1 156134598 156134647 -86529706 - MER97a DNA MER1_type? -788 106 73 231 281 0 0 chr1 156134831 156134888 -86529465 + L2 LINE L2 3003 3059 -213 244 271 57 14 chr1 156137466 156137536 -86526817 - L2 LINE L2 -58 3255 3183 370 240 146 0 chr1 156137576 156137672 -86526681 - MER81 DNA DNA -4 110 1 837 306 24 76 chr1 156137755 156138284 -86526069 - L1MC4a LINE L1 -1902 5906 5410 2220 79 7 0 chr1 156138284 156138574 -86525779 + AluY SINE Alu 1 292 -19 837 306 24 76 chr1 156138574 156138635 -86525718 - L1MC4a LINE L1 -2398 5410 5347 785 126 21 77 chr1 156138659 156138802 -86525551 - FLAM_C SINE Alu -7 136 2 301 270 43 26 chr1 156138804 156138919 -86525434 - L1MC4a LINE L1 -816 5330 5214 273 309 89 42 chr1 156139278 156139469 -86524884 + L2 LINE L2 2917 3116 -156 1843 160 0 0 chr1 156139973 156140273 -86524080 + AluJb SINE Alu 1 300 -12 293 302 203 29 chr1 156141724 156141966 -86522387 - L2 LINE L2 -1 3271 2988 227 239 0 0 chr1 156142372 156142418 -86521935 + MIR SINE MIR 41 86 -122 1919 100 0 11 chr1 156142671 156142942 -86521411 + AluSg SINE Alu 32 299 -11 570 289 93 34 chr1 156143152 156143443 -86520910 - MLT1J1 LTR MaLR -138 308 1 506 210 104 40 chr1 156144260 156144550 -86519803 + L1ME LINE L1 2072 2334 -3881 1494 175 3 34 chr1 156144556 156144669 -86519684 + AluJo SINE Alu 11 126 -186 2240 92 3 0 chr1 156144669 156144974 -86519379 - AluSc SINE Alu -3 306 1 1494 175 3 34 chr1 156144974 156145152 -86519201 + AluJo SINE Alu 126 293 -19 1329 275 131 20 chr1 156145198 156145686 -86518667 - MLT1G1 LTR MaLR 0 595 54 1046 231 26 76 chr1 156145700 156146198 -86518155 + L1ME LINE L1 2420 2892 -3323 1211 227 48 43 chr1 156146211 156146586 -86517767 + L1ME LINE L1 5479 5855 -384 1557 186 122 59 chr1 156146607 156147016 -86517337 - MSTB2 LTR MaLR 0 457 23 3494 186 63 58 chr1 156147684 156148187 -86516166 + L1ME1 LINE L1 5189 5688 -646 1915 139 14 0 chr1 156148187 156148482 -86515871 + AluSq SINE Alu 2 300 -13 3494 186 63 58 chr1 156148482 156148970 -86515383 + L1ME1 LINE L1 5688 6332 -2 21 36 0 0 chr1 156148970 156148998 -86515355 + AT_rich Low_complexity Low_complexity 1 28 0 1081 249 113 35 chr1 156149563 156149996 -86514357 - MLT1C LTR MaLR 0 467 1 2138 82 7 0 chr1 156150504 156150795 -86513558 + AluY SINE Alu 1 293 -18 358 279 29 29 chr1 156151602 156151738 -86512615 + MER112 DNA MER1_type 1 136 -124 395 161 0 12 chr1 156151753 156151834 -86512519 + CT-rich Low_complexity Low_complexity 3 82 0 304 275 55 9 chr1 156151835 156151944 -86512409 + MER112 DNA MER1_type 146 259 -1 1611 234 129 28 chr1 156153573 156154077 -86510276 - MLT1H1 LTR MaLR 0 555 1 688 291 169 38 chr1 156154310 156154772 -86509581 - L2 LINE L2 -2 3311 2791 186 233 0 0 chr1 156154825 156154885 -86509468 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 13960 106 28 6 chr1 156155310 156157322 -86507031 + L1PBa LINE L1 1 2057 -4806 247 254 34 0 chr1 156157588 156157647 -86506706 + LTR19A LTR ERV1 393 453 -33 1147 74 0 6 chr1 156157678 156157841 -86506512 + L1PBa LINE L1 2036 2197 -4666 4048 103 11 95 chr1 156157844 156158563 -86505790 + L1PB2 LINE L1 5493 6151 0 342 284 0 10 chr1 156159062 156159164 -86505189 + (CAACT)n Simple_repeat Simple_repeat 5 105 0 601 236 48 24 chr1 156159311 156159476 -86504877 + MIR SINE MIR 21 189 -73 189 203 14 81 chr1 156163098 156163172 -86501181 - L2 LINE L2 -111 3202 3134 2200 119 6 6 chr1 156163302 156163614 -86500739 - AluSq SINE Alu -1 312 1 449 313 60 27 chr1 156164563 156164863 -86499490 + L1ME4a LINE L1 5808 6117 -4 223 256 33 50 chr1 156165391 156165512 -86498841 + MIR SINE MIR 88 206 -56 645 274 144 14 chr1 156166282 156166698 -86497655 - L2 LINE L2 -2 3311 2842 226 260 94 47 chr1 156166739 156166866 -86497487 - L2 LINE L2 -586 2728 2596 259 299 94 52 chr1 156166929 156167167 -86497186 + MIR SINE MIR 1 249 -13 774 105 0 125 chr1 156167294 156167446 -86496907 - FLAM_C SINE Alu 0 133 1 238 41 0 61 chr1 156167479 156167528 -86496825 + LTR66 LTR ERVL 394 439 -171 300 257 0 0 chr1 156167528 156167641 -86496712 + (TA)n Simple_repeat Simple_repeat 1 113 0 2150 106 10 3 chr1 156167682 156167974 -86496379 - AluSq SINE Alu -19 294 1 184 303 53 13 chr1 156168715 156168791 -86495562 - MIR SINE MIR -82 180 102 267 197 14 42 chr1 156168813 156168884 -86495469 - MLT1K LTR MaLR 0 588 520 1858 155 13 20 chr1 156169327 156169630 -86494723 - AluSx SINE Alu -11 301 1 358 245 86 55 chr1 156169676 156169839 -86494514 - MER91B DNA MER1_type -5 185 18 2152 140 0 7 chr1 156170277 156170584 -86493769 - AluSx SINE Alu -3 309 5 1675 160 31 7 chr1 156170587 156170875 -86493478 - AluJo SINE Alu -17 295 1 1049 313 91 78 chr1 156171067 156172106 -86492247 + L3 LINE CR1 523 1574 -3 202 114 0 29 chr1 156173021 156173056 -86491297 + (GGA)n Simple_repeat Simple_repeat 1 34 0 719 162 0 8 chr1 156176984 156177101 -86487252 + FLAM_A SINE Alu 1 116 -17 914 260 185 6 chr1 156177959 156178363 -86485990 - LTR33 LTR ERVL -4 517 1 2270 89 31 0 chr1 156178488 156178781 -86485572 + AluSp SINE Alu 1 302 -11 848 234 123 62 chr1 156179120 156179608 -86484745 - LTR33 LTR ERVL -1 520 3 209 258 0 32 chr1 156180861 156180923 -86483430 + MIR SINE MIR 203 262 0 209 264 50 41 chr1 156181003 156181124 -86483229 - MIR SINE MIR -1 261 140 355 228 61 9 chr1 156181660 156181774 -86482579 + LTR33 LTR ERVL 381 500 -21 310 241 27 54 chr1 156181829 156181941 -86482412 - L2 LINE L2 -37 3276 3168 326 167 98 114 chr1 156181956 156182088 -86482265 + L2 LINE L2 3153 3282 -31 412 232 40 53 chr1 156182121 156182272 -86482081 - L2 LINE L2 -177 3136 2988 356 298 18 26 chr1 156182300 156182414 -86481939 - MIR SINE MIR -126 136 24 247 245 0 0 chr1 156182426 156182479 -86481874 + MIR SINE MIR 191 243 -19 396 266 76 32 chr1 156183374 156183436 -86480917 - MIR SINE MIR -84 178 120 2051 194 14 0 chr1 156183436 156183796 -86480557 + MLT1A1 LTR MaLR 1 365 0 396 266 76 32 chr1 156183796 156183891 -86480462 - MIR SINE MIR -142 120 14 227 292 0 14 chr1 156184779 156184851 -86479502 - L2 LINE L2 -1 3312 3242 266 331 50 0 chr1 156186123 156186262 -86478091 - MIR SINE MIR -110 152 7 41 0 0 0 chr1 156186306 156186347 -86478006 + AT_rich Low_complexity Low_complexity 1 41 0 419 310 83 1 chr1 156186891 156187097 -86477256 - MIR SINE MIR -8 254 35 355 258 157 107 chr1 156188034 156188353 -86476000 - L1ME4a LINE L1 -50 6071 5710 613 164 16 41 chr1 156188353 156188498 -86475855 + FLAM_A SINE Alu 1 142 0 355 258 157 107 chr1 156188498 156188739 -86475614 - L1ME4a LINE L1 -411 5710 5482 233 139 0 0 chr1 156188784 156188820 -86475533 - L2 LINE L2 -21 3251 3216 25 0 0 0 chr1 156189033 156189058 -86475295 + AT_rich Low_complexity Low_complexity 1 25 0 362 167 0 0 chr1 156189088 156189148 -86475205 - L1M4 LINE L1 -2456 3690 3631 681 292 59 4 chr1 156189251 156189497 -86474856 - MLT1F LTR MaLR -280 287 6 187 330 133 23 chr1 156189550 156189723 -86474630 + L2 LINE L2 2926 3117 -155 208 284 165 0 chr1 156190124 156190233 -86474120 + MIR SINE MIR 19 145 -63 3633 155 86 35 chr1 156190471 156191195 -86473158 - L1M4c LINE L1 -5606 778 18 831 263 0 5 chr1 156191195 156191381 -86472972 + MER58A DNA MER1_type 39 223 -1 29 47 0 0 chr1 156191448 156191491 -86472862 + AT_rich Low_complexity Low_complexity 1 43 0 249 83 0 0 chr1 156191673 156191709 -86472644 + (TG)n Simple_repeat Simple_repeat 1 36 0 1600 126 0 4 chr1 156191709 156191939 -86472414 + AluSg/x SINE Alu 74 302 -8 273 119 0 0 chr1 156193055 156193097 -86471256 + (TA)n Simple_repeat Simple_repeat 2 43 0 2234 107 7 7 chr1 156193097 156193405 -86470948 - AluSx SINE Alu -4 308 1 202 256 0 0 chr1 156195201 156195244 -86469109 + MIR SINE MIR 81 123 -139 2265 189 40 14 chr1 156195284 156195729 -86468624 - MSTB2 LTR MaLR 0 457 1 2886 127 0 0 chr1 156195764 156196166 -86468187 - LOR1a LTR ERV1 0 497 96 612 49 12 12 chr1 156196193 156196275 -86468078 - LOR1b LTR ERV1 -362 99 18 2236 108 3 0 chr1 156197802 156198107 -86466246 - AluSx SINE Alu -6 306 1 2006 127 64 20 chr1 156198609 156198768 -86465585 - Tigger3(Golem) DNA MER2_type -342 2686 2535 2352 90 0 10 chr1 156198768 156199068 -86465285 - AluSx SINE Alu -15 297 1 2006 127 64 20 chr1 156199068 156199301 -86465052 - Tigger3(Golem) DNA MER2_type -493 2535 2277 551 215 37 0 chr1 156199289 156199396 -86464957 - Tigger3(Golem) DNA MER2_type -2918 111 1 * 770 190 19 114 chr1 156199398 156199609 -86464744 - MER8 DNA MER2_type 0 239 49 361 336 32 99 chr1 156199713 156200058 -86464295 + L2 LINE L2 2941 3262 -10 553 69 0 0 chr1 156200159 156200231 -86464122 - AluS SINE Alu -241 72 1 3568 78 2 47 chr1 156200231 156200569 -86463784 - HSMAR2 DNA Mariner -220 1082 773 2203 121 0 0 chr1 156200569 156200867 -86463486 - AluSx SINE Alu -14 298 1 3568 78 2 47 chr1 156200867 156201040 -86463313 - HSMAR2 DNA Mariner -529 773 594 3824 114 12 21 chr1 156201079 156201172 -86463181 - HSMAR2 DNA Mariner -694 608 516 1938 103 8 0 chr1 156201172 156201433 -86462920 - AluSp SINE Alu -12 301 39 3824 114 12 21 chr1 156201433 156201920 -86462433 - HSMAR2 DNA Mariner -786 516 33 1756 109 0 0 chr1 156202023 156202252 -86462101 + AluSq SINE Alu 68 296 -17 1298 117 9 30 chr1 156202253 156202484 -86461869 + HSMAR2 DNA Mariner 1077 1302 0 432 182 0 0 chr1 156202484 156202572 -86461781 + (TG)n Simple_repeat Simple_repeat 1 88 0 2149 120 0 20 chr1 156202599 156202898 -86461455 + AluSx SINE Alu 1 293 -19 252 0 0 0 chr1 156202898 156202926 -86461427 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 883 223 50 86 chr1 156204021 156204117 -86460236 - L1M4 LINE L1 -2668 3478 3380 1614 77 0 0 chr1 156204117 156204313 -86460040 - AluSg/x SINE Alu -18 294 99 2273 73 7 0 chr1 156204321 156204610 -86459743 - AluY SINE Alu -20 291 1 883 223 50 86 chr1 156204610 156204702 -86459651 - L1M4 LINE L1 -2773 3373 3279 2264 102 26 3 chr1 156204702 156205007 -86459346 - AluSx SINE Alu 0 312 1 883 223 50 86 chr1 156205007 156205229 -86459124 - L1M4 LINE L1 -2867 3279 3073 1276 179 0 0 chr1 156205246 156205447 -86458906 - AluJo SINE Alu -21 291 91 400 148 125 0 chr1 156205455 156205543 -86458810 - L1M4 LINE L1 -3436 2710 2612 1314 152 0 52 chr1 156205543 156205773 -86458580 - AluJb SINE Alu -2 310 93 27 0 0 0 chr1 156205780 156205807 -86458546 + AT_rich Low_complexity Low_complexity 1 27 0 410 233 68 23 chr1 156205816 156205949 -86458404 - L1MD3 LINE L1 -1 7994 7856 542 209 45 34 chr1 156206082 156206240 -86458113 - MSTC LTR MaLR -224 172 1 919 240 162 36 chr1 156206329 156206688 -86457665 + MLT1I LTR MaLR 4 407 -2 2172 114 3 10 chr1 156206933 156207239 -86457114 - AluSx SINE Alu -8 304 1 4167 112 38 3 chr1 156207363 156207977 -86456376 + MER41B LTR ERV1 1 635 0 332 189 14 0 chr1 156209366 156209440 -86454913 - L1MB8 LINE L1 0 6178 6104 1624 214 9 6 chr1 156209636 156209978 -86454375 - L1MB7 LINE L1 -80 6104 5762 23 0 0 0 chr1 156210060 156210083 -86454270 + AT_rich Low_complexity Low_complexity 1 23 0 210 71 0 0 chr1 156210308 156210336 -86454017 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 232 295 66 0 chr1 156211945 156212006 -86452347 + MIR SINE MIR 42 106 -102 590 305 11 0 chr1 156212040 156212217 -86452136 - MER117 DNA MER1_type -1 196 18 194 0 39 0 chr1 156212368 156212394 -86451959 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 436 239 11 0 chr1 156212396 156212488 -86451865 - FLAM_A SINE Alu -27 115 23 402 273 53 13 chr1 156212674 156212824 -86451529 + MIR SINE MIR 35 190 -72 2260 92 6 44 chr1 156212826 156213142 -86451211 + AluSg1 SINE Alu 1 304 -5 1628 167 0 17 chr1 156213410 156213697 -86450656 + AluJb SINE Alu 1 282 -30 1989 136 0 0 chr1 156213701 156213988 -86450365 + AluSq SINE Alu 4 290 -23 2127 95 3 14 chr1 156213992 156214287 -86450066 + AluSx SINE Alu 1 292 -20 40 49 0 0 chr1 156214453 156214514 -86449839 + AT_rich Low_complexity Low_complexity 1 61 0 242 266 89 6 chr1 156214516 156214674 -86449679 - L1ME4a LINE L1 -131 5990 5820 537 169 0 0 chr1 156215058 156215147 -86449206 + AluSg/x SINE Alu 219 307 -2 189 0 0 0 chr1 156215150 156215171 -86449182 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 2174 185 3 5 chr1 156215175 156215565 -86448788 - L1MB3 LINE L1 -23 6160 5772 9209 161 20 16 chr1 156215571 156216088 -86448265 - L1M4 LINE L1 -3404 2978 2464 2135 161 24 6 chr1 156216088 156216429 -86447924 + MER7A DNA MER2_type 2 346 0 9209 161 20 16 chr1 156216429 156217948 -86446405 - L1M4 LINE L1 -3918 2464 922 2054 131 0 3 chr1 156217949 156218247 -86446106 + AluSq SINE Alu 1 297 -16 1371 143 86 33 chr1 156218416 156218437 -86445916 + Tigger3(Golem) DNA MER2_type 2771 2789 -239 1766 163 3 13 chr1 156218437 156218750 -86445603 - AluJb SINE Alu -2 310 1 1371 143 86 33 chr1 156218750 156218973 -86445380 + Tigger3(Golem) DNA MER2_type 2789 3028 0 470 252 113 13 chr1 156219202 156219353 -86445000 - MIR SINE MIR -10 252 87 1489 201 0 7 chr1 156219772 156220045 -86444308 + AluJo SINE Alu 11 281 -31 580 138 0 0 chr1 156221068 156221155 -86443198 + L1PA16 LINE L1 5821 5907 -259 494 169 0 0 chr1 156221155 156221232 -86443121 - LTR54 LTR ERV1 -433 77 1 2127 114 0 0 chr1 156221424 156221713 -86442640 - AluSg1 SINE Alu -20 289 1 38 39 0 0 chr1 156221722 156221774 -86442579 + AT_rich Low_complexity Low_complexity 1 52 0 732 284 41 46 chr1 156222982 156223327 -86441026 + MLT1I LTR MaLR 65 407 -2 495 325 99 23 chr1 156223327 156223628 -86440725 - MER102b DNA MER1_type -17 324 1 198 71 0 0 chr1 156224146 156224174 -86440179 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 360 341 56 79 chr1 156225209 156225549 -86438804 - L2 LINE L2 0 3272 2941 2193 17 0 0 chr1 156225586 156225827 -86438526 + AluYa5 SINE Alu 30 270 -41 228 300 0 17 chr1 156226029 156226089 -86438264 + MIR SINE MIR 32 90 -118 1727 158 23 0 chr1 156226210 156226520 -86437833 + L1MC3 LINE L1 7469 7785 0 974 241 14 12 chr1 156227122 156227377 -86436976 - MIR SINE MIR -13 249 2 196 220 80 20 chr1 156227466 156227566 -86436787 - L2 LINE L2 -1035 2279 2174 2001 168 22 28 chr1 156227624 156227988 -86436365 - MLT1A1 LTR MaLR 0 365 4 2314 208 38 7 chr1 156227991 156228443 -86435910 - MLT1A1-int LTR MaLR 0 1735 1270 631 106 0 26 chr1 156228526 156228639 -86435714 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 266 192 41 27 chr1 156228639 156228712 -86435641 - MLT1A1-int LTR MaLR -487 884 811 3274 205 12 6 chr1 156228762 156229420 -86434933 - MLT1A1-int LTR MaLR -1073 662 1 239 200 0 0 chr1 156229420 156229465 -86434888 - MLT1A1 LTR MaLR 0 365 321 289 146 0 0 chr1 156229566 156229614 -86434739 + MLT1F1 LTR MaLR 516 563 -4 185 365 80 34 chr1 156229621 156229852 -86434501 - L2 LINE L2 -462 2852 2594 1822 160 0 19 chr1 156229852 156230170 -86434183 + AluJb SINE Alu 1 312 0 185 365 80 34 chr1 156230170 156230324 -86434029 - L2 LINE L2 -720 2594 2449 659 281 0 0 chr1 156232287 156232433 -86431920 - MLT1I LTR MaLR 0 409 264 418 235 78 67 chr1 156233093 156233289 -86431064 + MER5B DNA MER1_type 3 178 0 1980 104 38 21 chr1 156233537 156233826 -86430527 + AluSq SINE Alu 1 294 -19 1210 100 0 0 chr1 156233826 156234011 -86430342 + AluSc SINE Alu 129 316 0 232 272 168 16 chr1 156234318 156234443 -86429910 + Charlie8 DNA MER1_type 1 144 -2273 1926 241 112 2 chr1 156234590 156235064 -86429289 - MLT1F LTR MaLR -1 541 16 312 250 111 9 chr1 156235063 156235171 -86429182 - MLT1I LTR MaLR -266 143 25 * 506 291 31 0 chr1 156236098 156236225 -86428128 + MLT1H1 LTR MaLR 4 134 -421 2214 96 3 53 chr1 156236366 156236688 -86427665 - AluSx SINE Alu -6 306 1 243 303 93 49 chr1 156236933 156237095 -86427258 - MER5A DNA MER1_type -16 173 5 2280 156 3 40 chr1 156237450 156237828 -86426525 + THE1B LTR MaLR 1 364 0 367 235 82 10 chr1 156239057 156239155 -86425198 + L2 LINE L2 3168 3272 0 267 250 163 0 chr1 156239286 156239378 -86424975 - MER91A DNA MER1_type 0 196 90 208 394 11 0 chr1 156239414 156239508 -86424845 - MER91A DNA MER1_type -84 112 18 204 306 41 10 chr1 156239800 156239898 -86424455 - MIR SINE MIR -113 149 49 2269 231 79 35 chr1 156239927 156240588 -86423765 + L1MEc LINE L1 36 725 -5671 1798 144 9 41 chr1 156240623 156240943 -86423410 - AluJb SINE Alu 0 312 3 21 0 0 0 chr1 156241537 156241558 -86422795 + AT_rich Low_complexity Low_complexity 1 21 0 374 240 121 121 chr1 156241837 156242249 -86422104 - MLT1K LTR MaLR 0 588 177 271 284 0 27 chr1 156243135 156243209 -86421144 - MER5A DNA MER1_type -3 186 115 266 252 77 84 chr1 156243153 156243308 -86421045 + MER5B DNA MER1_type 22 175 -3 * 186 277 77 0 chr1 156243320 156243385 -86420968 + L2 LINE L2 3244 3313 0 2123 108 3 7 chr1 156244549 156244862 -86419491 + AluSp SINE Alu 1 312 0 306 366 8 8 chr1 156244937 156245060 -86419293 - L2 LINE L2 0 3313 3191 195 42 0 0 chr1 156245068 156245092 -86419261 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1621 163 166 34 chr1 156245646 156245996 -86418357 - MSTD LTR MaLR 0 396 1 1060 227 72 8 chr1 156245996 156246247 -86418106 + MLT1A1 LTR MaLR 24 290 -75 237 279 101 0 chr1 156246393 156246472 -86417881 - L2 LINE L2 -191 3081 2995 711 245 86 68 chr1 156246479 156246542 -86417811 - MER21B LTR ERV1 -125 738 678 1993 201 55 105 chr1 156246542 156247125 -86417228 + MLT2B3 LTR ERVL 1 554 0 711 245 86 68 chr1 156247125 156247387 -86416966 - MER21B LTR ERV1 -185 678 407 963 264 111 17 chr1 156248378 156248414 -86415939 - L2 LINE L2 0 3313 3282 3135 170 10 57 chr1 156248414 156248995 -86415358 + MLT2B3 LTR ERVL 1 554 0 963 264 111 17 chr1 156248995 156249318 -86415035 - L2 LINE L2 -31 3282 2920 4935 77 77 8 chr1 156250221 156250867 -86413486 + LTR8 LTR ERV1 1 691 0 209 286 162 58 chr1 156251010 156251164 -86413189 + L2 LINE L2 3101 3270 -2 210 71 0 0 chr1 156251523 156251551 -86412802 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 430 257 45 113 chr1 156251913 156252178 -86412175 + MLT1J LTR MaLR 219 465 -46 223 401 42 7 chr1 156252346 156252488 -86411865 - L2 LINE L2 -2859 455 309 2148 111 3 7 chr1 156252929 156253257 -86411096 + AluSq SINE Alu 1 313 0 625 268 44 6 chr1 156253788 156253971 -86410382 - MIR SINE MIR -51 211 22 2329 237 109 26 chr1 156254877 156255245 -86409108 - MER20B DNA MER1_type -2 782 446 1877 168 0 3 chr1 156255245 156255548 -86408805 - AluJo SINE Alu -10 302 1 2329 237 109 26 chr1 156255548 156255901 -86408452 - MER20B DNA MER1_type -338 446 1 186 71 0 0 chr1 156258064 156258092 -86406261 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1666 192 18 75 chr1 156258185 156258571 -86405782 - MLT1A1 LTR MaLR 0 365 2 252 0 0 0 chr1 156259595 156259623 -86404730 + (CA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr1 156260070 156260092 -86404261 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr1 156260474 156260508 -86403845 + (CA)n Simple_repeat Simple_repeat 2 35 0 2065 100 41 0 chr1 156261304 156261603 -86402750 - AluSx SINE Alu 0 310 1 190 262 68 87 chr1 156261794 156261897 -86402456 - MIR SINE MIR -131 131 31 246 163 0 0 chr1 156261923 156261966 -86402387 - MSTB2 LTR MaLR -15 442 400 207 0 0 0 chr1 156263161 156263184 -86401169 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 811 164 21 14 chr1 156263302 156263442 -86400911 - FLAM_C SINE Alu -2 141 1 21 36 0 0 chr1 156263671 156263699 -86400654 + AT_rich Low_complexity Low_complexity 1 28 0 423 319 48 43 chr1 156264205 156264412 -86399941 - MIR3 SINE MIR 0 208 1 245 242 65 0 chr1 156265290 156265352 -86399001 - MIR SINE MIR -110 152 87 25 0 0 0 chr1 156265517 156265542 -86398811 + AT_rich Low_complexity Low_complexity 1 25 0 220 250 91 53 chr1 156265595 156265727 -86398626 - L2 LINE L2 -848 2466 2330 350 244 191 46 chr1 156266632 156266763 -86397590 + MIR3 SINE MIR 2 151 -57 200 262 238 32 chr1 156267210 156267336 -86397017 - MER5A DNA MER1_type -1 188 37 374 361 14 35 chr1 156267434 156267578 -86396775 + MIR3 SINE MIR 22 162 -46 316 315 86 23 chr1 156269213 156269470 -86394883 + L1M4 LINE L1 5077 5349 -797 22 35 0 0 chr1 156269715 156269744 -86394609 + AT_rich Low_complexity Low_complexity 1 29 0 2228 78 4 0 chr1 156270093 156270401 -86393952 + AluSp SINE Alu 1 309 0 642 318 39 13 chr1 156270893 156271126 -86393227 - MIR SINE MIR -1 261 23 257 279 0 0 chr1 156272145 156272206 -86392147 + CT-rich Low_complexity Low_complexity 6 66 0 274 261 63 54 chr1 156272442 156272553 -86391800 - L2 LINE L2 -1 3312 3201 185 271 0 0 chr1 156272537 156272585 -86391768 + MIR SINE MIR 158 205 -57 * 2364 87 0 10 chr1 156272697 156273008 -86391345 - AluSx SINE Alu -4 308 1 1501 256 79 32 chr1 156273440 156273932 -86390421 - MLT1E LTR MaLR -77 516 2 256 246 0 0 chr1 156273945 156274006 -86390347 + Charlie1 DNA MER1_type 2701 2761 0 1669 158 9 54 chr1 156274472 156274644 -86389709 - AluJb SINE Alu -9 303 150 2360 96 3 0 chr1 156274644 156274945 -86389408 - AluSp SINE Alu -11 302 1 1669 158 9 54 chr1 156274945 156275089 -86389264 - AluJb SINE Alu -162 150 1 27 49 0 0 chr1 156275708 156275749 -86388604 + AT_rich Low_complexity Low_complexity 1 41 0 270 0 0 0 chr1 156276271 156276301 -86388052 + (TG)n Simple_repeat Simple_repeat 1 30 0 1609 174 41 24 chr1 156276307 156276600 -86387753 - AluJb SINE Alu -14 298 1 1119 240 0 39 chr1 156277985 156278239 -86386114 - MIR SINE MIR 0 262 19 274 353 22 15 chr1 156279159 156279295 -86385058 - MIR SINE MIR -115 147 11 913 194 13 0 chr1 156279642 156279797 -86384556 + AluJo SINE Alu 3 159 -153 37 23 0 0 chr1 156279870 156279914 -86384439 + AT_rich Low_complexity Low_complexity 1 44 0 2065 123 0 40 chr1 156280005 156280329 -86384024 - AluSx SINE Alu -1 311 1 759 251 36 20 chr1 156280558 156280809 -86383544 + L1MC4a LINE L1 5674 5928 -1880 1025 126 17 51 chr1 156280843 156281018 -86383335 + FAM SINE Alu 1 47 -2 667 115 60 110 chr1 156281677 156281747 -86382606 - MER104 DNA MER2_type -1722 176 104 1836 163 7 7 chr1 156281747 156282042 -86382311 + AluJo SINE Alu 1 295 -17 667 115 60 110 chr1 156282042 156282153 -86382200 - MER104 DNA MER2_type -1794 104 4 208 328 17 0 chr1 156282243 156282301 -86382052 + L2 LINE L2 3254 3312 -1 259 298 38 38 chr1 156282357 156282375 -86381978 - L2 LINE L2 -4 3309 3292 2374 78 10 7 chr1 156282375 156282683 -86381670 + AluSq SINE Alu 1 309 -4 259 298 38 38 chr1 156282683 156282795 -86381558 - L2 LINE L2 -20 3293 3179 * 565 380 74 7 chr1 156282782 156283240 -86381113 - L2 LINE L2 -1011 2303 1815 353 239 53 44 chr1 156283437 156283550 -86380803 + MIR SINE MIR 11 124 -84 703 215 0 0 chr1 156284365 156284495 -86379858 - FLAM_A SINE Alu -3 130 1 405 0 0 0 chr1 156284621 156284666 -86379687 + (TA)n Simple_repeat Simple_repeat 2 46 0 210 37 0 0 chr1 156284910 156284937 -86379416 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr1 156285187 156285215 -86379138 + AT_rich Low_complexity Low_complexity 1 28 0 451 286 15 58 chr1 156285420 156285517 -86378836 - MLT1J LTR MaLR -200 311 226 1648 168 4 0 chr1 156285517 156285773 -86378580 - AluJb SINE Alu -18 294 38 451 286 15 58 chr1 156285773 156285881 -86378472 - MLT1J LTR MaLR -285 226 115 1375 210 89 47 chr1 156286019 156286423 -86377930 - L1MD2 LINE L1 -238 6121 5701 1528 165 20 47 chr1 156286491 156286788 -86377565 - AluJo SINE Alu -23 289 1 767 90 231 0 chr1 156286869 156287025 -86377328 + MSTA LTR MaLR 3 194 -234 543 141 54 0 chr1 156287030 156287122 -86377231 + MSTA LTR MaLR 332 428 0 1608 161 67 6 chr1 156287122 156287451 -86376902 + MSTA LTR MaLR 80 428 0 710 228 78 6 chr1 156287490 156287657 -86376696 + MIR SINE MIR 7 185 -77 190 340 85 0 chr1 156287684 156287790 -86376563 + L2 LINE L2 3156 3270 -2 348 160 107 13 chr1 156287839 156287914 -86376439 - L2 LINE L2 -5 3308 3227 295 212 12 35 chr1 156289858 156289943 -86374410 + GA-rich Low_complexity Low_complexity 1 83 0 216 182 39 26 chr1 156290297 156290374 -86373979 + (CCG)n Simple_repeat Simple_repeat 1 78 0 26 0 0 0 chr1 156290393 156290419 -86373934 + GC_rich Low_complexity Low_complexity 1 26 0 327 292 91 70 chr1 156290455 156290698 -86373655 - L1M2 LINE L1 -5739 1110 863 1779 143 7 7 chr1 156293381 156293661 -86370692 + AluJb SINE Alu 1 280 -32 225 94 0 0 chr1 156293661 156293693 -86370660 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 2116 105 11 3 chr1 156294113 156294281 -86370072 - AluSx SINE Alu -16 296 124 180 0 0 0 chr1 156294281 156294301 -86370052 + (TA)n Simple_repeat Simple_repeat 1 20 0 2116 105 11 3 chr1 156294301 156294418 -86369935 - AluSx SINE Alu -188 124 9 300 50 0 0 chr1 156294728 156294768 -86369585 - Alu SINE Alu -262 40 1 1836 144 24 14 chr1 156295699 156295991 -86368362 - AluJb SINE Alu -17 295 1 184 287 109 30 chr1 156296606 156296707 -86367646 + L2 LINE L2 3160 3268 -4 195 277 77 0 chr1 156297155 156297220 -86367133 - L2 LINE L2 0 3313 3244 267 290 58 65 chr1 156297232 156297387 -86366966 - MER5B DNA MER1_type -3 175 22 * 274 284 0 27 chr1 156297331 156297405 -86366948 + MER5A DNA MER1_type 115 186 -3 181 366 44 22 chr1 156297793 156297976 -86366377 - L2 LINE L2 -578 2736 2550 245 250 119 119 chr1 156298291 156298703 -86365650 + MLT1K LTR MaLR 177 588 0 21 0 0 0 chr1 156298982 156299003 -86365350 + AT_rich Low_complexity Low_complexity 1 21 0 308 200 133 0 chr1 156299949 156300024 -86364329 - MIR SINE MIR 0 262 178 1251 160 4 44 chr1 156300039 156300264 -86364089 - AluJo SINE Alu -12 300 85 365 281 42 84 chr1 156300264 156300431 -86363922 - MIR SINE MIR -98 164 5 1887 176 16 16 chr1 156300874 156301260 -86363093 - MER58D DNA MER1_type 0 386 1 1121 257 166 8 chr1 156301280 156301665 -86362688 - MLT1H LTR MaLR -103 446 1 593 265 92 77 chr1 156301665 156302145 -86362208 - L1MC/D LINE L1 -743 5403 5320 2485 64 0 0 chr1 156302145 156302442 -86361911 - AluY SINE Alu -14 297 1 593 265 92 77 chr1 156302442 156302867 -86361486 - L1MC/D LINE L1 -826 5320 4903 296 276 132 84 chr1 156303075 156303325 -86361028 - MIR SINE MIR 0 262 1 2203 125 0 16 chr1 156303944 156304249 -86360104 - AluSx SINE Alu -12 300 1 240 326 11 34 chr1 156304340 156304429 -86359924 + L2 LINE L2 3170 3256 -16 850 222 19 0 chr1 156304431 156304593 -86359760 - FAM SINE Alu -9 166 2 351 320 111 45 chr1 156304859 156305315 -86359038 - L2 LINE L2 -110 3162 2682 2263 103 10 0 chr1 156305502 156305794 -86358559 + AluSq SINE Alu 1 295 -18 199 327 148 49 chr1 156305839 156306062 -86358291 + L2 LINE L2 2658 2902 -412 317 347 34 37 chr1 156306209 156306477 -86357876 - L2 LINE L2 -18 3295 3029 693 309 51 17 chr1 156306516 156306862 -86357491 - L2 LINE L2 -236 3036 2684 560 287 240 15 chr1 156306865 156307299 -86357054 + L2 LINE L2 2532 3061 -252 326 290 97 13 chr1 156307434 156307589 -86356764 - L2 LINE L2 -636 2678 2511 23 33 0 0 chr1 156307818 156307848 -86356505 + AT_rich Low_complexity Low_complexity 1 30 0 960 147 31 37 chr1 156307963 156308154 -86356199 + MER20 DNA MER1_type 29 218 -1 375 254 140 66 chr1 156308252 156308395 -86355958 - MARNA DNA Mariner -7 579 448 467 152 13 0 chr1 156308395 156308474 -86355879 - L1PA10 LINE L1 -1 6167 6088 375 254 140 66 chr1 156308474 156308665 -86355688 - MARNA DNA Mariner -138 448 220 225 323 169 4 chr1 156308780 156308887 -86355466 + L1MC/D LINE L1 5454 5542 -2266 2161 124 0 0 chr1 156308887 156309178 -86355175 - AluSc SINE Alu -10 299 9 225 323 169 4 chr1 156309178 156309318 -86355035 + L1MC/D LINE L1 5542 5742 -2066 2336 81 3 16 chr1 156309895 156310205 -86354148 - AluY SINE Alu -5 306 1 2225 120 0 3 chr1 156311895 156312194 -86352159 + AluSx SINE Alu 1 298 -14 221 75 25 0 chr1 156312796 156312836 -86351517 + (GA)n Simple_repeat Simple_repeat 1 41 0 22 35 0 0 chr1 156313469 156313498 -86350855 + AT_rich Low_complexity Low_complexity 1 29 0 1284 224 52 33 chr1 156314054 156314384 -86349969 + MER58B DNA MER1_type 2 337 -4 2092 130 138 5 chr1 156314683 156315061 -86349292 - MSTA LTR MaLR 0 428 1 4876 140 31 13 chr1 156315061 156315887 -86348466 - MSTA-int LTR MaLR 0 1580 740 1606 160 48 14 chr1 156317297 156317590 -86346763 - AluJb SINE Alu -9 303 1 2903 163 42 8 chr1 156318288 156318817 -86345536 + MER44D DNA MER2_type 1 602 -3 205 304 0 27 chr1 156319091 156319203 -86345150 + GA-rich Low_complexity Low_complexity 3 111 0 522 327 42 14 chr1 156319268 156319485 -86344868 + L2 LINE L2 1863 2085 -1229 846 169 0 14 chr1 156319487 156319635 -86344718 - FRAM SINE Alu 0 40 1 23 0 0 0 chr1 156319758 156319781 -86344572 + AT_rich Low_complexity Low_complexity 1 23 0 472 169 45 0 chr1 156319781 156319870 -86344483 - AluJ/FLAM SINE Alu -215 97 5 337 344 156 30 chr1 156320005 156320371 -86343982 + L2 LINE L2 2387 2798 -516 441 218 121 16 chr1 156320593 156320717 -86343636 + L2 LINE L2 3171 3307 -6 32 57 0 0 chr1 156321066 156321119 -86343234 + AT_rich Low_complexity Low_complexity 1 53 0 1151 117 0 0 chr1 156321836 156321990 -86342363 + AluSg/x SINE Alu 137 290 -22 1946 117 64 0 chr1 156322188 156322470 -86341883 + AluSx SINE Alu 1 300 -12 602 132 11 0 chr1 156323447 156323538 -86340815 - MER4E LTR ERV1 0 779 688 2318 166 13 0 chr1 156323653 156324051 -86340302 - MER57A LTR ERV1 0 403 1 2476 55 3 7 chr1 156324400 156324708 -86339645 - AluY SINE Alu -4 307 1 680 257 59 47 chr1 156325066 156325319 -86339034 + MIR SINE MIR 7 262 0 422 209 99 110 chr1 156325486 156325677 -86338676 + MER58C DNA MER1_type 27 215 0 201 321 0 0 chr1 156326510 156326563 -86337790 - MIR3 SINE MIR -27 181 129 345 233 129 17 chr1 156327418 156327534 -86336819 + MIR SINE MIR 124 252 -10 2162 74 42 3 chr1 156327587 156327871 -86336482 + AluYa5 SINE Alu 1 295 -16 311 331 35 28 chr1 156327891 156328033 -86336320 - L3 LINE CR1 -1 1576 1434 217 283 0 17 chr1 156328096 156328156 -86336197 - L2 LINE L2 -219 3053 2995 1036 308 120 32 chr1 156329071 156329763 -86334590 + L1MEd LINE L1 16 768 -5351 429 279 121 29 chr1 156329887 156330467 -86333886 + L1MEd LINE L1 1057 1730 -861 1340 183 12 4 chr1 156330736 156330977 -86333376 + AluJo SINE Alu 66 308 -4 22 0 0 0 chr1 156331303 156331325 -86333028 + AT_rich Low_complexity Low_complexity 1 22 0 404 284 281 12 chr1 156331518 156331838 -86332515 - L2 LINE L2 0 3313 2908 1883 142 0 20 chr1 156332373 156332669 -86331684 + AluJb SINE Alu 1 290 -22 306 277 57 71 chr1 156332784 156332925 -86331428 + L2 LINE L2 3134 3272 0 1512 188 10 16 chr1 156333025 156333329 -86331024 + AluJo SINE Alu 1 302 -10 391 355 60 38 chr1 156333363 156333546 -86330807 + MIR3 SINE MIR 1 187 -21 207 69 0 0 chr1 156334288 156334317 -86330036 + (TG)n Simple_repeat Simple_repeat 2 30 0 8091 168 51 30 chr1 156334705 156336325 -86328028 + L1PB3 LINE L1 3449 5032 -1122 2061 77 13 68 chr1 156336325 156336635 -86327718 + AluY SINE Alu 11 303 -8 8091 168 51 30 chr1 156336635 156337116 -86327237 + L1PB3 LINE L1 5032 5501 -653 2150 92 43 0 chr1 156337116 156337398 -86326955 + AluSx SINE Alu 1 294 -18 8091 168 51 30 chr1 156337398 156337905 -86326448 + L1PB3 LINE L1 5501 6117 -37 21 36 0 0 chr1 156338879 156338907 -86325446 + AT_rich Low_complexity Low_complexity 1 28 0 246 267 113 81 chr1 156339683 156339904 -86324449 - MLT1L LTR MaLR -223 392 165 1704 122 4 28 chr1 156340144 156340424 -86323929 + AluSq SINE Alu 43 316 0 2412 85 3 0 chr1 156341146 156341452 -86322901 + AluSp SINE Alu 1 307 -6 811 194 12 6 chr1 156342076 156342236 -86322117 - MER5A DNA MER1_type -21 168 8 2451 165 18 11 chr1 156342247 156342696 -86321657 + L1PA16 LINE L1 5707 6158 -8 2420 77 0 0 chr1 156342730 156343027 -86321326 - AluSc SINE Alu -12 297 1 2177 116 3 0 chr1 156343032 156343334 -86321019 - AluSx SINE Alu -9 303 1 999 85 0 97 chr1 156344350 156344515 -86319838 - AluSg/x SINE Alu -30 280 132 2114 128 7 0 chr1 156344515 156344821 -86319532 - AluSc SINE Alu -1 308 1 232 208 222 0 chr1 156345545 156345617 -86318736 - MIR SINE MIR -99 163 76 21 0 0 0 chr1 156346125 156346146 -86318207 + AT_rich Low_complexity Low_complexity 1 21 0 246 289 55 78 chr1 156346265 156346393 -86317960 - MIR SINE MIR -65 143 19 419 213 247 13 chr1 156346541 156346691 -86317662 - MIR SINE MIR -30 232 48 1786 156 0 39 chr1 156347456 156347764 -86316589 - AluJb SINE Alu -16 296 1 202 267 81 81 chr1 156348773 156348848 -86315505 - MIR SINE MIR -75 187 110 1048 236 117 17 chr1 156348848 156349200 -86315153 - MLT1B LTR MaLR -3 387 1 254 161 0 32 chr1 156349797 156349859 -86314494 - L1MC4 LINE L1 0 8042 7983 2879 219 119 51 chr1 156349865 156350321 -86314032 - L1MC4 LINE L1 -95 7713 7289 2218 123 0 0 chr1 156350321 156350631 -86313722 - AluSx SINE Alu -2 310 1 2879 219 119 51 chr1 156350631 156350816 -86313537 - L1MC4 LINE L1 -519 7289 7118 1707 169 30 0 chr1 156350816 156351083 -86313270 - AluJo SINE Alu -37 275 1 2879 219 119 51 chr1 156351083 156351718 -86312635 - L1MC4 LINE L1 -690 7118 6454 302 268 61 56 chr1 156352414 156352627 -86311726 + L1MD3 LINE L1 2238 2451 -3975 3151 182 95 28 chr1 156352907 156353758 -86310595 + L1MDa LINE L1 1119 2026 -4514 585 217 9 0 chr1 156353759 156353865 -86310488 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 784 90 192 34 chr1 156353857 156354034 -86310319 + Tigger3(Golem) DNA MER2_type 2279 2483 -546 690 143 0 0 chr1 156354036 156354181 -86310172 - AluSg/x SINE Alu 0 329 185 2012 119 33 10 chr1 156354198 156354500 -86309853 - AluSg SINE Alu -1 309 1 1969 116 41 24 chr1 156354502 156354794 -86309559 - AluSx SINE Alu -15 297 1 2970 121 26 62 chr1 156354818 156355362 -86308991 + Tigger3(Golem) DNA MER2_type 2504 3027 -2 1652 250 24 8 chr1 156355364 156355860 -86308493 + L1MD3 LINE L1 4690 5193 -1233 1605 179 22 149 chr1 156355892 156356199 -86308154 + L1MD3 LINE L1 5310 5654 -985 2176 99 0 7 chr1 156356199 156356483 -86307870 + AluSg1 SINE Alu 19 300 -9 1605 179 22 149 chr1 156356483 156356762 -86307591 + L1MD3 LINE L1 5654 5967 -672 1632 180 11 3 chr1 156356762 156357046 -86307307 + AluJo SINE Alu 4 289 -23 1605 179 22 149 chr1 156357046 156357075 -86307278 + L1MD3 LINE L1 5967 5998 -641 2138 142 80 20 chr1 156357075 156357477 -86306876 + MSTA LTR MaLR 3 428 0 1605 179 22 149 chr1 156357477 156357759 -86306594 + L1MD3 LINE L1 5998 5983 -656 1579 167 31 27 chr1 156357759 156357883 -86306470 + AluJo SINE Alu 2 124 -188 257 0 30 0 chr1 156357883 156357916 -86306437 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1579 167 31 27 chr1 156357916 156358085 -86306268 + AluJo SINE Alu 124 296 -16 1605 179 22 149 chr1 156358085 156358466 -86305887 + L1MD3 LINE L1 5982 6410 -229 275 273 101 14 chr1 156358473 156358612 -86305741 + L1MD2 LINE L1 6475 6625 -14 2155 118 0 3 chr1 156359161 156359457 -86304896 - AluSx SINE Alu -17 295 1 2799 131 69 4 chr1 156359630 156360110 -86304243 - MER9 LTR ERVK 0 511 1 3405 153 19 15 chr1 156360110 156361166 -86303187 - HERVK9 LTR ERVK 0 8032 3538 * 27979 92 2 2 chr1 156361140 156364866 -86299487 - HERVK9 LTR ERVK -730 5186 1463 2723 115 98 8 chr1 156364874 156365343 -86299010 - MER9 LTR ERVK 0 511 1 182 250 141 16 chr1 156365349 156365413 -86298940 + L2 LINE L2 3201 3272 0 1993 139 0 0 chr1 156365953 156366257 -86298096 - AluSx SINE Alu 0 304 1 213 286 130 0 chr1 156366933 156367010 -86297343 + MIR SINE MIR 58 144 -118 2241 85 17 0 chr1 156367874 156368168 -86296185 + AluSq SINE Alu 1 299 -14 341 288 122 0 chr1 156369529 156369668 -86294685 - MIR SINE MIR -72 190 35 437 266 47 31 chr1 156370030 156370158 -86294195 + MIR SINE MIR 9 138 -124 22 35 0 0 chr1 156371917 156371946 -86292407 + AT_rich Low_complexity Low_complexity 1 29 0 665 319 50 8 chr1 156375030 156375268 -86289085 + MIR SINE MIR 13 260 -2 1783 81 4 4 chr1 156376416 156376651 -86287702 - AluSq SINE Alu -4 309 75 202 273 28 98 chr1 156377398 156377541 -86286812 - L2 LINE L2 -9 3304 3172 6442 146 28 21 chr1 156378141 156379011 -86285342 + Tigger2 DNA MER2_type 1 882 -1836 1828 166 10 7 chr1 156379011 156379148 -86285205 + AluJb SINE Alu 1 136 -176 2251 91 17 7 chr1 156379148 156379445 -86284908 + AluSq SINE Alu 1 300 -13 1828 166 10 7 chr1 156379445 156379614 -86284739 + AluJb SINE Alu 136 308 -4 6442 146 28 21 chr1 156379614 156379884 -86284469 + Tigger2 DNA MER2_type 882 1149 -1569 1453 71 5 19 chr1 156379987 156380199 -86284154 + Tigger2 DNA MER2_type 1136 1344 -1374 3384 111 94 5 chr1 156380202 156380753 -86283600 + Tigger2 DNA MER2_type 2119 2718 0 1221 160 38 4 chr1 156380976 156381213 -86283140 - L1MB4 LINE L1 -314 5866 5622 1165 201 128 77 chr1 156381213 156381642 -86282711 - MLT1D LTR MaLR -51 454 4 216 353 54 42 chr1 156381834 156382001 -86282352 - L3 LINE CR1 -68 1509 1341 572 236 53 96 chr1 156382142 156382350 -86282003 - MIR SINE MIR -1 261 63 2138 119 3 3 chr1 156382351 156382644 -86281709 - AluSp SINE Alu -20 293 1 2011 145 16 0 chr1 156382684 156382988 -86281365 - AluSx SINE Alu 0 312 4 202 315 84 28 chr1 156383194 156383337 -86281016 - L2 LINE L2 -211 3061 2911 206 293 13 40 chr1 156383339 156383414 -86280939 - L3 LINE CR1 -367 1210 1138 22 0 0 0 chr1 156383507 156383529 -86280824 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr1 156383542 156383583 -86280770 + AT_rich Low_complexity Low_complexity 1 41 0 205 258 102 62 chr1 156383616 156383744 -86280609 - L3 LINE CR1 -603 974 842 4355 129 107 5 chr1 156383753 156384503 -86279850 - LTR1B LTR ERV1 0 826 1 30 27 0 0 chr1 156385044 156385081 -86279272 + AT_rich Low_complexity Low_complexity 1 37 0 477 0 0 0 chr1 156385897 156385950 -86278403 + (T)n Simple_repeat Simple_repeat 1 53 0 230 0 0 32 chr1 156386334 156386365 -86277988 + (TTAAA)n Simple_repeat Simple_repeat 1 30 0 855 153 0 8 chr1 156386365 156386496 -86277857 - MER3 DNA MER1_type -78 131 2 694 254 134 22 chr1 156386766 156386998 -86277355 + MIR SINE MIR 5 262 0 2082 88 55 7 chr1 156387138 156387446 -86276907 + L1PA8A LINE L1 5804 6126 -5 1734 135 0 50 chr1 156388154 156388435 -86275918 + AluJo SINE Alu 12 278 -34 1922 166 3 20 chr1 156388714 156389057 -86275296 - MER1B DNA MER1_type 0 337 1 3634 156 25 37 chr1 156389784 156390315 -86274038 - L1MB5 LINE L1 0 6174 5653 1388 142 201 0 chr1 156390315 156390604 -86273749 - MER7A DNA MER2_type -1 345 1 3634 156 25 37 chr1 156390604 156390801 -86273552 - L1MB5 LINE L1 -521 5653 5455 230 267 69 59 chr1 156391410 156391511 -86272842 + L2 LINE L2 2955 3056 -216 651 235 83 10 chr1 156391658 156391862 -86272491 + L2 LINE L2 3095 3313 0 212 298 202 0 chr1 156391875 156391969 -86272384 + L2 LINE L2 3152 3264 -8 970 94 0 0 chr1 156392838 156392965 -86271388 + AluSg/x SINE Alu 183 309 -3 2372 75 3 0 chr1 156392981 156393273 -86271080 + AluSp SINE Alu 1 293 -20 2086 128 0 7 chr1 156393335 156393633 -86270720 + AluSq SINE Alu 1 296 -17 1243 117 0 6 chr1 156393633 156393812 -86270541 + AluSq SINE Alu 134 311 -2 404 236 16 31 chr1 156394940 156395067 -86269286 - L1ME1 LINE L1 -211 5955 5831 1459 243 108 66 chr1 156396136 156396548 -86267805 - L1ME3 LINE L1 -90 6031 5638 2164 106 7 0 chr1 156396548 156396841 -86267512 - AluSx SINE Alu -2 310 16 1459 243 108 66 chr1 156396841 156397897 -86266456 - L1ME3 LINE L1 -483 5638 4537 505 208 59 0 chr1 156397958 156398059 -86266294 - FLAM_C SINE Alu -36 107 1 1331 115 18 174 chr1 156398224 156398564 -86265789 - AluJb SINE Alu -25 287 1 333 233 84 99 chr1 156398581 156398809 -86265544 - L1ME3 LINE L1 -1835 4311 4092 2358 201 126 14 chr1 156398809 156399469 -86264884 - MER50 LTR ERV1 0 734 1 333 233 84 99 chr1 156399469 156399593 -86264760 - L1ME3 LINE L1 -2054 4092 3968 216 149 0 0 chr1 156399604 156399651 -86264702 + (C)n Simple_repeat Simple_repeat 1 47 0 1622 189 11 3 chr1 156399653 156399939 -86264414 - AluJb SINE Alu -22 290 3 237 289 26 9 chr1 156399950 156400064 -86264289 - L1ME3 LINE L1 -2187 3959 3844 2352 103 0 0 chr1 156400064 156400364 -86263989 - AluSc SINE Alu -9 300 1 1074 65 0 0 chr1 156400380 156400519 -86263834 - AluSp/q SINE Alu -2 311 173 895 281 54 43 chr1 156400541 156400983 -86263370 - L1ME3 LINE L1 -2374 3772 3319 701 196 8 8 chr1 156400983 156401116 -86263237 - FLAM_C SINE Alu 0 133 1 895 281 54 43 chr1 156401116 156401343 -86263010 - L1ME3 LINE L1 -2827 3319 3096 7597 171 54 24 chr1 156401468 156403196 -86261157 - L1PA16 LINE L1 -14 6152 4333 225 0 0 0 chr1 156403196 156403221 -86261132 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 7597 171 54 24 chr1 156403221 156404137 -86260216 - L1PA16 LINE L1 -1833 4333 3445 434 168 53 11 chr1 156404638 156404733 -86259620 + MER88 LTR ERVL 80 178 -286 * 534 231 25 38 chr1 156404649 156404809 -86259544 - MER74B LTR ERVL -74 548 391 536 184 10 10 chr1 156404826 156404929 -86259424 - FRAM SINE Alu -64 112 10 1321 221 97 21 chr1 156404938 156405278 -86259075 - MER74B LTR ERVL -191 431 66 2637 3 3 0 chr1 156406523 156406808 -86257545 + AluYa5 SINE Alu 13 298 -13 1777 162 36 7 chr1 156406828 156407131 -86257222 - AluJb SINE Alu 0 312 1 21 0 0 0 chr1 156407482 156407503 -86256850 + AT_rich Low_complexity Low_complexity 1 21 0 214 245 0 19 chr1 156408582 156408635 -86255718 + (ATGGTG)n Simple_repeat Simple_repeat 2 53 0 31 68 0 0 chr1 156408959 156409018 -86255335 + AT_rich Low_complexity Low_complexity 1 59 0 359 333 71 8 chr1 156409555 156409681 -86254672 + L2 LINE L2 3134 3267 -5 363 217 28 70 chr1 156409858 156410001 -86254352 - L1MC4 LINE L1 -4 8038 7902 534 248 50 0 chr1 156410057 156410178 -86254175 - FLAM_A SINE Alu -6 127 1 2170 218 112 12 chr1 156410190 156410795 -86253558 - L1MC4 LINE L1 -142 7900 7235 262 347 144 0 chr1 156411148 156411370 -86252983 + L2 LINE L2 2388 2641 -673 1701 186 76 5 chr1 156411370 156411789 -86252564 - L1MC4 LINE L1 -443 7599 7151 614 254 32 37 chr1 156412862 156413051 -86251302 + MIR3 SINE MIR 20 207 -1 741 237 103 0 chr1 156414742 156414936 -86249417 + MIR SINE MIR 49 262 0 225 39 0 0 chr1 156414938 156414964 -86249389 - U2 snRNA snRNA -156 32 7 231 36 0 0 chr1 156415192 156415220 -86249133 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 207 191 32 16 chr1 156415298 156415361 -86248992 + (TA)n Simple_repeat Simple_repeat 2 65 0 2043 62 0 0 chr1 156417049 156417292 -86247061 + AluY SINE Alu 2 244 -67 21 36 0 0 chr1 156418523 156418551 -86245802 + AT_rich Low_complexity Low_complexity 1 28 0 184 171 0 98 chr1 156419137 156419178 -86245175 - L2 LINE L2 -102 3170 3134 195 332 37 75 chr1 156419289 156419476 -86244877 - L2 LINE L2 -285 2987 2808 2292 86 0 10 chr1 156419567 156419870 -86244483 + AluY SINE Alu 1 300 -11 1376 102 13 13 chr1 156419924 156420483 -86243870 - L1PA15 LINE L1 -4 6161 5482 1337 82 0 36 chr1 156420484 156420665 -86243688 - AluSp SINE Alu -5 308 133 2256 112 3 0 chr1 156420665 156420968 -86243385 - AluSq SINE Alu -9 304 1 1337 82 0 36 chr1 156420968 156420981 -86243372 - AluSp SINE Alu -180 133 121 877 137 0 0 chr1 156421062 156421186 -86243167 - AluSp SINE Alu -60 253 130 1607 181 7 36 chr1 156421189 156421493 -86242860 - AluJo SINE Alu -15 297 3 190 243 0 0 chr1 156422255 156422292 -86242061 + MIR SINE MIR 86 122 -86 832 271 52 12 chr1 156422373 156422624 -86241729 + MIR SINE MIR 2 262 0 2222 102 0 3 chr1 156423341 156423645 -86240708 - AluY SINE Alu -8 303 1 2295 116 3 0 chr1 156423861 156424172 -86240181 - AluSx SINE Alu 0 312 1 600 314 160 32 chr1 156424313 156424913 -86239440 - L2 LINE L2 0 3313 2629 31 26 0 0 chr1 156426275 156426313 -86238040 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 156426662 156426685 -86237668 + AT_rich Low_complexity Low_complexity 1 23 0 513 289 27 7 chr1 156426694 156426843 -86237510 + MIR3 SINE MIR 45 196 -12 4422 207 85 39 chr1 156426886 156428473 -86235880 + L1ME1 LINE L1 3921 5629 -537 1792 134 36 11 chr1 156428473 156428748 -86235605 - AluJb SINE Alu -30 282 1 4422 207 85 39 chr1 156428748 156429198 -86235155 + L1ME1 LINE L1 5629 6057 -109 228 296 66 20 chr1 156430417 156430569 -86233784 + L1ME LINE L1 5311 5469 -2339 240 268 89 47 chr1 156430634 156430824 -86233529 + L1ME LINE L1 5583 5780 -341 196 27 54 27 chr1 156431162 156431199 -86233154 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 191 217 0 65 chr1 156431424 156431470 -86232883 - L2 LINE L2 -48 3224 3182 1773 138 63 33 chr1 156432075 156432409 -86231944 - MER2 DNA MER2_type 0 344 1 1750 141 9 44 chr1 156432769 156433088 -86231265 + AluJb SINE Alu 5 312 0 927 113 0 0 chr1 156433378 156433502 -86230851 - FLAM_C SINE Alu -19 124 1 1896 141 40 3 chr1 156433822 156434121 -86230232 - AluJb SINE Alu -2 310 1 2267 86 0 16 chr1 156434330 156434644 -86229709 + AluSx SINE Alu 1 309 -3 189 74 0 0 chr1 156435749 156435776 -86228577 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1092 170 21 5 chr1 156435778 156435972 -86228381 - AluJo SINE Alu -30 282 86 282 242 0 30 chr1 156436176 156436242 -86228111 + L2 LINE L2 3204 3267 -5 2081 118 0 7 chr1 156436247 156436583 -86227770 - AluSx SINE Alu 0 334 1 799 155 59 37 chr1 156436770 156436957 -86227396 + MER3 DNA MER1_type 1 191 -18 214 293 46 32 chr1 156437263 156437391 -86226962 + MIR SINE MIR 10 140 -68 1799 154 16 29 chr1 156437855 156438166 -86226187 - AluJb SINE Alu -3 309 3 207 0 0 0 chr1 156438949 156438972 -86225381 + (CA)n Simple_repeat Simple_repeat 2 24 0 190 359 11 11 chr1 156439188 156439280 -86225073 - MIR3 SINE MIR 0 208 117 200 243 100 29 chr1 156439306 156439376 -86224977 - MER5A DNA MER1_type -71 118 44 2057 121 4 0 chr1 156439826 156440107 -86224246 - AluSx SINE Alu -30 282 1 305 253 141 0 chr1 156440992 156441091 -86223262 + MIR SINE MIR 30 142 -66 233 200 0 0 chr1 156441788 156441833 -86222520 + CT-rich Low_complexity Low_complexity 2 46 0 2013 139 20 3 chr1 156441926 156442229 -86222124 - AluSx SINE Alu -2 310 3 2344 77 0 37 chr1 156442233 156442558 -86221795 - AluSq SINE Alu 0 313 1 22 35 0 0 chr1 156443318 156443347 -86221006 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 156443521 156443543 -86220810 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 156445428 156445458 -86218895 + AT_rich Low_complexity Low_complexity 1 30 0 685 125 54 0 chr1 156445568 156445680 -86218673 + MLT1E LTR MaLR 442 559 -34 695 233 182 24 chr1 156446009 156446339 -86218014 - HAL1 LINE L1 -723 1784 1403 1284 243 91 33 chr1 156447469 156447658 -86216695 + L1MB7 LINE L1 2397 2574 -3572 1699 185 3 32 chr1 156447658 156447966 -86216387 + AluJb SINE Alu 1 299 -13 1284 243 91 33 chr1 156447966 156448262 -86216091 + L1MB7 LINE L1 2574 2910 -3236 * 2782 252 39 33 chr1 156448248 156449214 -86215139 + L1MB7 LINE L1 3608 4579 -1567 54 0 0 0 chr1 156449262 156449316 -86215037 + AT_rich Low_complexity Low_complexity 1 54 0 1720 157 55 0 chr1 156449316 156449590 -86214763 - AluJb SINE Alu -21 291 3 3437 210 77 20 chr1 156449594 156451082 -86213271 + L1MB7 LINE L1 4565 6141 -43 1624 220 72 25 chr1 156451078 156451523 -86212830 - L1M4 LINE L1 -757 5389 4924 * 215 327 47 19 chr1 156451631 156451738 -86212615 - MIR SINE MIR -91 171 62 180 373 105 24 chr1 156451955 156452164 -86212189 - L2 LINE L2 -2782 532 307 210 37 0 0 chr1 156452772 156452799 -86211554 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2048 133 0 0 chr1 156452799 156453078 -86211275 - AluSx SINE Alu -33 279 1 315 178 96 0 chr1 156453081 156453154 -86211199 + Charlie5 DNA MER1_type 2545 2624 0 2458 80 0 0 chr1 156453300 156453600 -86210753 - AluSc SINE Alu -9 300 1 300 27 0 0 chr1 156455415 156455452 -86208901 + (TG)n Simple_repeat Simple_repeat 1 37 0 875 163 0 0 chr1 156456133 156456268 -86208085 + FAM SINE Alu 1 40 -9 610 141 50 9 chr1 156457152 156457347 -86207006 - MER1B DNA MER1_type 0 339 66 246 125 0 0 chr1 156458350 156458398 -86205955 + (A)n Simple_repeat Simple_repeat 1 48 0 23 68 0 0 chr1 156461170 156461214 -86203139 + AT_rich Low_complexity Low_complexity 1 44 0 2095 108 31 0 chr1 156462431 156462719 -86201634 - AluSx SINE Alu -11 301 5 213 39 0 0 chr1 156467303 156467329 -86197024 + (TTA)n Simple_repeat Simple_repeat 2 27 0 252 0 0 0 chr1 156467489 156467517 -86196836 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr1 156469514 156469537 -86194816 + AT_rich Low_complexity Low_complexity 1 23 0 248 197 99 0 chr1 156471212 156471283 -86193070 + HsTC2 DNA Tc2 1 78 -1820 30 0 0 0 chr1 156471626 156471656 -86192697 + AT_rich Low_complexity Low_complexity 1 30 0 1564 163 80 4 chr1 156471656 156471920 -86192433 - AluJb SINE Alu -26 286 3 318 229 271 0 chr1 156475734 156475830 -86188523 + MIR SINE MIR 70 191 -71 376 244 17 33 chr1 156477235 156477415 -86186938 + CT-rich Low_complexity Low_complexity 2 178 0 306 249 17 44 chr1 156477754 156477935 -86186418 + CT-rich Low_complexity Low_complexity 3 178 0 2336 139 12 19 chr1 156478713 156479124 -86185229 + L1MA7 LINE L1 3748 4155 -1991 1041 178 5 0 chr1 156479120 156479317 -86185036 + L1MA7 LINE L1 4864 5061 -1085 * 2359 139 5 0 chr1 156479310 156479698 -86184655 + L1MA7 LINE L1 5336 5725 -566 2270 114 3 9 chr1 156479759 156480074 -86184279 + AluSp SINE Alu 1 313 0 2790 186 9 10 chr1 156480076 156480651 -86183702 + L1MA7 LINE L1 5717 6290 -1 297 0 0 0 chr1 156480660 156480693 -86183660 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 513 255 98 11 chr1 156480865 156481049 -86183304 + MER115 DNA AcHobo 229 428 -265 457 285 85 50 chr1 156481712 156481912 -86182441 - MIR SINE MIR -18 244 38 190 139 47 47 chr1 156482628 156482671 -86181682 - L3 LINE CR1 -7 1570 1528 2127 114 0 10 chr1 156484468 156484767 -86179586 + AluSx SINE Alu 1 296 -16 236 284 74 21 chr1 156485031 156485126 -86179227 + MIR SINE MIR 67 166 -96 192 292 53 44 chr1 156485826 156485939 -86178414 + L2 LINE L2 3183 3296 -17 272 91 23 0 chr1 156486352 156486396 -86177957 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 204 267 0 0 chr1 156486594 156486639 -86177714 - L2 LINE L2 -8 3305 3261 696 204 56 31 chr1 156486648 156486810 -86177543 + MIR SINE MIR 26 191 -71 193 161 0 0 chr1 156486843 156486874 -86177479 - L2 LINE L2 -92 3221 3191 271 267 0 0 chr1 156487225 156487285 -86177068 - MER5B DNA MER1_type -67 111 52 475 222 0 0 chr1 156487473 156487563 -86176790 + MIR SINE MIR 100 189 -73 2293 108 3 0 chr1 156487570 156487865 -86176488 - AluSx SINE Alu -16 296 1 437 233 63 16 chr1 156488619 156488761 -86175592 - MIR SINE MIR -63 145 10 314 315 69 41 chr1 156488983 156489195 -86175158 + MIR SINE MIR 15 237 -25 214 295 134 9 chr1 156489281 156489350 -86175003 + MIR SINE MIR 121 180 -82 2411 82 0 7 chr1 156489350 156489654 -86174699 + AluY SINE Alu 1 302 -9 214 295 134 9 chr1 156489654 156489696 -86174657 + MIR SINE MIR 180 246 -16 284 314 0 58 chr1 156489774 156489895 -86174458 - MIR SINE MIR -51 211 98 382 257 289 14 chr1 156489967 156490185 -86174168 - L3 LINE CR1 -41 1536 1259 453 198 165 8 chr1 156490858 156490979 -86173374 - MIR SINE MIR -121 141 2 1544 123 0 5 chr1 156491299 156491519 -86172834 + AluSg/x SINE Alu 82 300 -10 219 69 0 0 chr1 156491777 156491806 -86172547 + (T)n Simple_repeat Simple_repeat 1 29 0 2239 125 0 0 chr1 156491987 156492282 -86172071 + AluSx SINE Alu 1 295 -17 306 240 58 0 chr1 156492421 156492525 -86171828 - L1ME LINE L1 -340 5781 5672 1920 151 7 0 chr1 156492560 156492852 -86171501 + AluJo SINE Alu 1 294 -18 466 320 10 56 chr1 156492855 156492984 -86171369 + L1MC4 LINE L1 5265 5383 -2425 2149 128 10 0 chr1 156492984 156493288 -86171065 + AluSc SINE Alu 3 309 0 466 320 10 56 chr1 156493288 156493355 -86170998 + L1MC4 LINE L1 5383 5452 -2356 428 287 128 17 chr1 156493375 156493609 -86170744 - L2 LINE L2 -321 2992 2736 1481 107 7 79 chr1 156493993 156494170 -86170183 + MLT1B LTR MaLR 1 152 -238 1904 100 40 37 chr1 156494170 156494286 -86170067 + AluSx SINE Alu 1 115 -197 2195 105 0 7 chr1 156494286 156494594 -86169759 + AluSq SINE Alu 1 306 0 1904 100 40 37 chr1 156494594 156494775 -86169578 + AluSx SINE Alu 115 300 -12 1481 107 7 79 chr1 156494775 156494877 -86169476 + MLT1B LTR MaLR 152 260 -130 217 297 0 0 chr1 156495232 156495296 -86169057 + (CATA)n Simple_repeat Simple_repeat 4 67 0 318 310 11 0 chr1 156495296 156495383 -86168970 + L1MC4 LINE L1 6614 6701 -1341 561 259 53 16 chr1 156495544 156495748 -86168605 - MIR SINE MIR -56 206 3 342 254 102 140 chr1 156495891 156496030 -86168323 + L1ME4a LINE L1 5732 5875 -246 1676 152 46 33 chr1 156496030 156496333 -86168020 + AluJo SINE Alu 1 307 -5 342 254 102 140 chr1 156496333 156496412 -86167941 + L1ME4a LINE L1 5875 5955 -166 704 84 106 28 chr1 156496412 156496554 -86167799 + L1MB4 LINE L1 6028 6180 0 342 254 102 140 chr1 156496554 156496728 -86167625 + L1ME4a LINE L1 5955 6110 -11 186 333 37 0 chr1 156498994 156499075 -86165278 + MER5A DNA MER1_type 87 170 -19 241 306 135 9 chr1 156500489 156500600 -86163753 + MIR3 SINE MIR 62 186 -22 333 288 25 0 chr1 156500995 156501075 -86163278 + L2 LINE L2 2977 3058 -214 619 121 10 0 chr1 156501107 156501230 -86163123 - AluSg/x SINE Alu 0 336 213 2121 92 0 54 chr1 156501289 156501603 -86162750 + AluSx SINE Alu 5 301 -11 2304 106 13 3 chr1 156502009 156502310 -86162043 - AluSx SINE Alu -8 304 1 263 396 79 0 chr1 156502503 156502642 -86161711 + L2 LINE L2 3123 3272 0 2290 122 0 3 chr1 156502775 156503087 -86161266 + AluJb SINE Alu 1 311 -1 1626 58 27 22 chr1 156503246 156503471 -86160882 - L1PA6 LINE L1 0 6154 5929 453 170 72 46 chr1 156504065 156504218 -86160135 + L1ME4a LINE L1 5963 6119 -2 2215 84 42 0 chr1 156504223 156504508 -86159845 + AluSg SINE Alu 1 297 -13 236 91 23 0 chr1 156507556 156507600 -86156753 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 205 307 33 27 chr1 156507639 156507789 -86156564 + CT-rich Low_complexity Low_complexity 4 154 0 2325 82 9 19 chr1 156507971 156508286 -86156067 - AluSx SINE Alu 0 312 1 254 293 0 24 chr1 156509247 156509329 -86155024 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 2638 46 3 0 chr1 156509487 156509793 -86154560 - AluY SINE Alu -4 307 1 1601 110 0 9 chr1 156511684 156511903 -86152450 - AluSx SINE Alu -58 254 38 797 239 126 57 chr1 156512742 156512891 -86151462 + L2 LINE L2 2040 2177 -1137 2189 113 0 3 chr1 156512891 156513204 -86151149 - AluSx SINE Alu 0 312 1 797 239 126 57 chr1 156513204 156513387 -86150966 + L2 LINE L2 2177 2396 -918 262 188 24 112 chr1 156513462 156513632 -86150721 - L1ME4a LINE L1 -4 6117 5963 337 264 35 35 chr1 156513732 156513851 -86150502 - L1ME4a LINE L1 -335 5786 5665 2324 123 0 0 chr1 156513851 156514160 -86150193 - AluY SINE Alu -1 310 2 337 264 35 35 chr1 156514160 156514184 -86150169 - L1ME4a LINE L1 -455 5666 5643 231 312 51 77 chr1 156514297 156514531 -86149822 - L1ME4a LINE L1 -515 5606 5379 908 200 0 11 chr1 156514581 156514766 -86149587 - FRAM SINE Alu -1 175 1 2331 119 0 3 chr1 156514814 156515124 -86149229 - AluSx SINE Alu -3 309 1 342 0 0 0 chr1 156516083 156516121 -86148232 + (CA)n Simple_repeat Simple_repeat 2 39 0 239 181 114 114 chr1 156516479 156516658 -86147695 - MIR3 SINE MIR -68 194 10 435 279 53 26 chr1 156517517 156517743 -86146610 + L1MC4 LINE L1 6798 7029 -1013 2243 70 13 0 chr1 156517747 156518045 -86146308 - AluSx SINE Alu -9 303 2 261 152 22 0 chr1 156518109 156518155 -86146198 + L1MC5 LINE L1 6968 7014 -947 702 237 32 5 chr1 156518182 156518372 -86145981 - L1MC5 LINE L1 -35 7926 7732 1657 184 146 68 chr1 156518383 156519046 -86145307 + L1MC5 LINE L1 7025 7739 -222 270 232 74 11 chr1 156519388 156519483 -86144870 + MIR SINE MIR 101 201 -61 1602 126 100 4 chr1 156519536 156519797 -86144556 + AluJo SINE Alu 1 286 -26 603 272 13 0 chr1 156519807 156519965 -86144388 - MIR SINE MIR 0 262 103 1740 144 3 48 chr1 156520511 156520824 -86143529 - AluJo SINE Alu -13 299 1 514 266 149 74 chr1 156521158 156521561 -86142792 + L3 LINE CR1 960 1392 -185 553 270 21 13 chr1 156521578 156521769 -86142584 + MIR SINE MIR 14 251 -11 352 237 122 0 chr1 156521855 156522011 -86142342 + L1ME4a LINE L1 5944 6118 -3 229 215 149 41 chr1 156522195 156522316 -86142037 + L1ME4a LINE L1 5971 6104 -17 21 0 0 0 chr1 156523724 156523745 -86140608 + AT_rich Low_complexity Low_complexity 1 21 0 1757 179 0 0 chr1 156524001 156524302 -86140051 + AluJb SINE Alu 1 301 -11 2271 100 3 0 chr1 156525992 156526301 -86138052 - AluSp SINE Alu -1 312 3 545 247 114 0 chr1 156526501 156526667 -86137686 - MIR SINE MIR -13 249 65 2338 75 3 0 chr1 156527491 156527799 -86136554 + AluSx SINE Alu 1 309 -3 271 185 62 49 chr1 156528284 156528365 -86135988 + L2 LINE L2 3232 3313 0 185 333 28 9 chr1 156529210 156529318 -86135035 - MIR SINE MIR -55 153 44 201 279 0 0 chr1 156529733 156529776 -86134577 - MER91A DNA MER1_type -2 188 146 2147 109 0 7 chr1 156529790 156530092 -86134261 + AluSx SINE Alu 5 304 -8 2098 125 0 6 chr1 156530093 156530404 -86133949 + AluSg1 SINE Alu 1 309 0 300 302 72 0 chr1 156530437 156530576 -86133777 - MER91A DNA MER1_type -47 149 1 329 260 99 75 chr1 156530676 156530732 -86133621 + MIR SINE MIR 19 72 -190 1458 178 3 36 chr1 156530732 156531035 -86133318 - AluJo SINE Alu -19 293 1 329 260 99 75 chr1 156531035 156531170 -86133183 + MIR SINE MIR 72 211 -51 2586 169 41 2 chr1 156531260 156531723 -86132630 - MER31A LTR ERV1 0 485 5 263 210 0 16 chr1 156533262 156533324 -86131029 + CT-rich Low_complexity Low_complexity 2 62 0 2298 64 0 3 chr1 156533339 156533636 -86130717 + AluSg SINE Alu 1 296 -14 1532 133 60 80 chr1 156533647 156533978 -86130375 + AluSx SINE Alu 1 312 0 4378 146 9 20 chr1 156534112 156534283 -86130070 + L1MB3 LINE L1 5442 5613 -570 2310 71 7 0 chr1 156534283 156534578 -86129775 + AluSp SINE Alu 1 297 -16 4378 146 9 20 chr1 156534578 156535154 -86129199 + L1MB3 LINE L1 5613 6181 -2 2219 115 0 0 chr1 156536027 156536339 -86128014 - AluSx SINE Alu 0 312 1 945 221 20 5 chr1 156536460 156536664 -86127689 - MIR SINE MIR -19 243 37 567 215 34 27 chr1 156536661 156536810 -86127543 - MIR3 SINE MIR -26 182 33 * 386 237 44 69 chr1 156537386 156537546 -86126807 + MIR SINE MIR 30 192 -62 256 333 37 0 chr1 156537813 156537921 -86126432 - MIR3 SINE MIR -2 206 95 751 276 29 21 chr1 156538124 156538367 -86125986 + MIR SINE MIR 6 250 -12 255 277 139 10 chr1 156538388 156538489 -86125864 + L2 LINE L2 3154 3267 -5 892 266 132 47 chr1 156538504 156539133 -86125220 + L2 LINE L2 2640 3313 0 183 100 0 0 chr1 156539206 156539236 -86125117 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 294 307 39 24 chr1 156539236 156539363 -86124990 + L3 LINE CR1 1432 1560 -17 488 290 59 23 chr1 156539955 156540201 -86124152 + L1MC4a LINE L1 5617 5783 -338 292 229 110 42 chr1 156540226 156540344 -86124009 + L1ME4a LINE L1 5970 6095 -26 645 310 65 22 chr1 156541543 156541775 -86122578 - MIR SINE MIR -1 261 20 1263 121 31 54 chr1 156542111 156542335 -86122018 + MER20 DNA MER1_type 1 219 0 352 351 69 15 chr1 156542734 156542865 -86121488 + MIR3 SINE MIR 9 146 -62 23 33 0 0 chr1 156543412 156543442 -86120911 + AT_rich Low_complexity Low_complexity 1 30 0 2259 61 16 22 chr1 156544044 156544355 -86119998 - AluSp SINE Alu -4 309 1 758 245 89 38 chr1 156545466 156545562 -86118791 - LTR16C LTR ERVL 0 491 401 2840 112 46 18 chr1 156545562 156546016 -86118337 + MLT1C LTR MaLR 1 467 0 758 245 89 38 chr1 156546016 156546156 -86118197 - LTR16C LTR ERVL -90 401 243 229 267 267 30 chr1 156547109 156547274 -86117079 + MIR SINE MIR 40 243 -19 979 101 0 0 chr1 156548121 156548260 -86116093 - FRAM SINE Alu -6 170 32 180 0 0 0 chr1 156548459 156548479 -86115874 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 299 276 99 73 chr1 156548962 156549154 -86115199 + MIR3 SINE MIR 5 201 -7 770 56 24 24 chr1 156549212 156549338 -86115015 + (TTTTC)n Simple_repeat Simple_repeat 5 130 0 195 42 0 0 chr1 156549338 156549362 -86114991 + (TCCCC)n Simple_repeat Simple_repeat 5 28 0 880 183 0 122 chr1 156549371 156549584 -86114769 - AluJb SINE Alu -39 273 87 1961 120 0 68 chr1 156549889 156550215 -86114138 - AluSx SINE Alu -8 304 1 1556 192 0 7 chr1 156550554 156550845 -86113508 + AluJo SINE Alu 7 295 -17 2302 79 9 16 chr1 156552081 156552396 -86111957 + AluSp SINE Alu 1 313 0 222 360 12 6 chr1 156553162 156553326 -86111027 + (CA)n Simple_repeat Simple_repeat 2 166 0 224 301 24 89 chr1 156554816 156554939 -86109414 + MIR SINE MIR 92 206 -56 270 226 43 75 chr1 156555489 156555582 -86108771 - MIR3 SINE MIR -53 155 66 204 133 0 0 chr1 156555641 156555671 -86108682 - MIR SINE MIR -119 143 114 470 298 144 45 chr1 156555990 156556280 -86108073 + L1MC4a LINE L1 5606 5928 -238 23 0 0 0 chr1 156556403 156556426 -86107927 + AT_rich Low_complexity Low_complexity 1 23 0 365 206 0 0 chr1 156556770 156556843 -86107510 - MER116 DNA Mariner -4 76 4 1846 98 0 8 chr1 156557122 156557402 -86106951 - AluSx SINE Alu 0 311 34 295 277 25 92 chr1 156557402 156557515 -86106838 - L2 LINE L2 -10 3303 3199 620 263 132 5 chr1 156558880 156559070 -86105283 - MIR SINE MIR -13 249 36 497 247 53 68 chr1 156561883 156562073 -86102280 + MIR3 SINE MIR 1 187 -21 230 261 46 0 chr1 156562109 156562174 -86102179 + Charlie8 DNA MER1_type 58 125 -2292 263 248 109 38 chr1 156562238 156562448 -86101905 + L1ME1 LINE L1 4458 4682 -1464 414 204 11 0 chr1 156562452 156562545 -86101808 + L1MB7 LINE L1 5104 5197 -949 291 271 25 76 chr1 156562622 156562740 -86101613 - MIR SINE MIR -136 126 15 185 0 40 0 chr1 156563846 156563871 -86100482 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5111 154 24 3 chr1 156564938 156565913 -86098440 + L1MB7 LINE L1 5174 6166 -18 3048 191 53 9 chr1 156566045 156566850 -86097503 + L1ME1 LINE L1 4828 5695 -471 186 103 0 0 chr1 156566850 156566879 -86097474 + (TA)n Simple_repeat Simple_repeat 1 29 0 3048 191 53 9 chr1 156566879 156567134 -86097219 + L1ME1 LINE L1 5695 5937 -229 439 288 36 29 chr1 156567240 156567379 -86096974 - L2 LINE L2 -2 3311 3172 287 217 84 35 chr1 156567382 156567525 -86096828 + L1MC/D LINE L1 5314 5463 -2345 602 231 41 0 chr1 156567532 156567679 -86096674 + L2 LINE L2 1552 1704 -1610 625 281 119 14 chr1 156567711 156568006 -86096347 + MLT1H LTR MaLR 209 534 -15 259 303 0 13 chr1 156568037 156568113 -86096240 - MLT1K LTR MaLR -327 261 187 297 159 0 0 chr1 156568435 156568498 -86095855 + (TGGA)n Simple_repeat Simple_repeat 1 63 0 712 316 118 16 chr1 156568940 156569320 -86095033 + MLT1K LTR MaLR 13 431 -157 318 50 0 0 chr1 156570233 156570273 -86094080 + (GA)n Simple_repeat Simple_repeat 1 40 0 282 330 48 0 chr1 156570353 156570456 -86093897 + L2 LINE L2 3163 3270 -2 181 139 0 56 chr1 156570433 156570469 -86093884 - L2 LINE L2 -2682 632 599 * 2003 139 0 22 chr1 156570774 156571091 -86093262 - AluJb SINE Alu -1 311 2 484 206 20 20 chr1 156571268 156571385 -86092968 - MER63 DNA MER1_type -1 1060 719 515 311 66 6 chr1 156571519 156571686 -86092667 - MIR3 SINE MIR 0 208 32 393 326 8 31 chr1 156571770 156571899 -86092454 + MLT1K LTR MaLR 99 224 -364 2182 85 14 0 chr1 156572003 156572296 -86092057 - AluSx SINE Alu -15 297 1 378 214 10 39 chr1 156572439 156572542 -86091811 + LTR67 LTR ERVL 458 557 0 1813 199 74 64 chr1 156572559 156573161 -86091192 - MLT1E3 LTR MaLR 0 624 1 750 231 66 33 chr1 156573214 156573456 -86090897 + MLT1K LTR MaLR 339 588 0 2617 138 11 47 chr1 156573787 156574077 -86090276 - Tigger2a DNA MER2_type -2274 434 164 2095 113 0 7 chr1 156574077 156574387 -86089966 - AluSx SINE Alu -4 308 1 2617 138 11 47 chr1 156574387 156574545 -86089808 - Tigger2a DNA MER2_type -2544 164 2 1526 171 7 33 chr1 156574673 156574978 -86089375 - AluJo SINE Alu -15 297 1 180 0 0 0 chr1 156575039 156575059 -86089294 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1844 103 59 4 chr1 156575075 156575348 -86089005 - AluSq SINE Alu -25 288 1 255 326 163 0 chr1 156575354 156575452 -86088901 - MIR SINE MIR -65 143 30 291 301 160 28 chr1 156575456 156575669 -86088684 + MIR SINE MIR 12 252 -10 717 243 0 13 chr1 156576244 156576396 -86087957 + MIR3 SINE MIR 34 183 -25 317 246 39 70 chr1 156577090 156577206 -86087147 - MIR SINE MIR -107 101 14 522 313 64 36 chr1 156577611 156577860 -86086493 - MIR SINE MIR -6 256 1 424 286 138 10 chr1 156577956 156578159 -86086194 - MIR SINE MIR -32 230 2 420 230 184 13 chr1 156578308 156578460 -86085893 - MER91A DNA MER1_type 0 196 19 1444 208 53 32 chr1 156578613 156578778 -86085575 + MLT1B LTR MaLR 4 164 -226 2481 59 0 0 chr1 156578778 156579084 -86085269 + AluY SINE Alu 1 306 -5 1444 208 53 32 chr1 156579084 156579297 -86085056 + MLT1B LTR MaLR 164 390 0 204 289 0 79 chr1 156579907 156579983 -86084370 - L2 LINE L2 -62 3210 3141 381 240 78 31 chr1 156580719 156580848 -86083505 + L1ME LINE L1 5299 5433 -688 246 204 19 19 chr1 156581224 156581278 -86083075 + MIR SINE MIR 82 135 -73 385 271 52 13 chr1 156581306 156581461 -86082892 - L1MC5 LINE L1 -51 7910 7750 369 256 244 0 chr1 156581460 156581632 -86082721 + L1ME LINE L1 5549 5762 -359 * 443 316 72 16 chr1 156581650 156581843 -86082510 + MLT1K LTR MaLR 15 218 -370 270 156 109 16 chr1 156581960 156582024 -86082329 + MLT1K LTR MaLR 508 577 -11 225 333 94 0 chr1 156582053 156582191 -86082162 + L1ME LINE L1 5782 5932 -189 23 0 0 0 chr1 156582366 156582389 -86081964 + AT_rich Low_complexity Low_complexity 1 23 0 2580 48 0 0 chr1 156582862 156583171 -86081182 - AluY SINE Alu -2 309 1 333 0 0 0 chr1 156583383 156583420 -86080933 + (CAG)n Simple_repeat Simple_repeat 2 38 0 195 162 0 0 chr1 156585138 156585175 -86079178 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 327 279 162 18 chr1 156585417 156585528 -86078825 - MER5A DNA MER1_type -7 182 56 269 246 144 76 chr1 156585443 156585561 -86078792 + MER5A DNA MER1_type 43 168 -21 * 2234 101 0 0 chr1 156585962 156586260 -86078093 + AluY SINE Alu 1 298 -13 181 253 12 96 chr1 156587255 156587338 -86077015 - L2 LINE L2 -13 3259 3184 475 241 43 121 chr1 156587585 156587867 -86076486 + MIR SINE MIR 3 262 0 1784 205 68 35 chr1 156588268 156588541 -86075812 + Charlie4a DNA MER1_type 4 301 -1660 1421 167 87 7 chr1 156588541 156588817 -86075536 + AluSx SINE Alu 1 298 -14 1784 205 68 35 chr1 156588817 156589031 -86075322 + Charlie4a DNA MER1_type 301 507 -1 2217 92 3 0 chr1 156589358 156589653 -86074700 + AluY SINE Alu 1 296 -15 2226 96 0 0 chr1 156590636 156590927 -86073426 + AluSx SINE Alu 2 292 -20 198 267 17 50 chr1 156591938 156591998 -86072355 - L2 LINE L2 -85 3228 3171 2331 86 0 0 chr1 156592377 156592679 -86071674 - AluSg SINE Alu -8 302 1 1691 153 0 24 chr1 156592686 156592973 -86071380 - AluJb SINE Alu -22 290 11 1805 155 3 0 chr1 156592992 156593282 -86071071 - AluSx SINE Alu -18 294 4 182 308 166 47 chr1 156593405 156593791 -86070562 - L2 LINE L2 -653 2661 2230 266 241 65 36 chr1 156594473 156594596 -86069757 + MIR SINE MIR 45 169 -62 318 224 15 0 chr1 156594728 156594795 -86069558 - MER5B DNA MER1_type -110 68 1 668 256 92 60 chr1 156594829 156595110 -86069243 - MER102b DNA MER1_type -45 296 7 381 235 47 12 chr1 156595161 156595246 -86069107 + MIR SINE MIR 86 173 -89 2306 94 0 0 chr1 156595761 156596069 -86068284 + AluSx SINE Alu 1 308 -4 202 333 15 0 chr1 156596983 156597049 -86067304 - MIR SINE MIR -122 140 74 313 267 44 56 chr1 156597214 156597394 -86066959 - LTR31 LTR ERV1 -9 610 433 5764 73 24 16 chr1 156597798 156598616 -86065737 - L1MA3 LINE L1 0 6305 5481 537 203 65 59 chr1 156599553 156599706 -86064647 + MIR3 SINE MIR 51 204 -4 1555 143 31 62 chr1 156599713 156600035 -86064318 - AluJo SINE Alu 0 312 1 840 249 107 73 chr1 156600254 156600636 -86063717 + L2 LINE L2 2913 3307 -6 230 250 31 0 chr1 156601055 156601119 -86063234 + L2 LINE L2 3207 3272 0 415 321 66 0 chr1 156601309 156601446 -86062907 + MIR SINE MIR 113 258 -4 2146 101 14 0 chr1 156601477 156601773 -86062580 - AluSx SINE Alu -12 300 1 2632 84 43 0 chr1 156602358 156602727 -86061626 - L1PA8 LINE L1 -1 6171 5787 216 299 102 114 chr1 156602940 156603412 -86060941 - L2 LINE L2 0 3272 2807 1671 155 7 18 chr1 156603472 156603927 -86060426 + AluJb SINE Alu 4 455 0 385 291 30 24 chr1 156603930 156604095 -86060258 + L1ME3A LINE L1 4540 4705 -1441 520 258 121 40 chr1 156604362 156604418 -86059935 - LTR16A LTR ERVL 0 450 400 1991 135 82 6 chr1 156604418 156604758 -86059595 + MER47A DNA MER2_type 1 366 0 520 258 121 40 chr1 156604758 156604899 -86059454 - LTR16A LTR ERVL -50 400 237 2403 209 118 43 chr1 156604908 156605080 -86059273 + L1ME3A LINE L1 5399 5557 -613 2182 94 0 3 chr1 156605080 156605368 -86058985 - AluSc SINE Alu -22 287 1 2403 209 118 43 chr1 156605368 156605441 -86058912 + L1ME3A LINE L1 5557 5623 -547 1841 145 3 10 chr1 156605441 156605751 -86058602 - AluJb SINE Alu -4 308 1 2403 209 118 43 chr1 156605751 156606201 -86058152 + L1ME3A LINE L1 5623 6147 -23 907 227 5 5 chr1 156606203 156606388 -86057965 - MLT1F LTR MaLR -13 529 345 246 120 20 40 chr1 156606426 156606476 -86057877 - MLT1E1 LTR MaLR -571 83 35 1219 278 82 18 chr1 156607737 156608311 -86056042 + L2 LINE L2 2707 3313 0 1285 101 152 0 chr1 156608347 156608545 -86055808 + MER30 DNA MER1_type 3 230 0 293 248 55 55 chr1 156609018 156609127 -86055226 - MIR SINE MIR -1 261 153 279 173 0 0 chr1 156609127 156609179 -86055174 + MER46C DNA MER2_type 1 52 -286 202 114 0 29 chr1 156609401 156609436 -86054917 + (TTG)n Simple_repeat Simple_repeat 3 36 0 427 143 29 0 chr1 156609819 156609889 -86054464 + MER46C DNA MER2_type 258 329 -9 331 225 67 58 chr1 156609900 156610020 -86054333 - MIR SINE MIR -62 146 33 1813 139 7 30 chr1 156611797 156612100 -86052253 + AluJb SINE Alu 3 298 -14 359 97 0 16 chr1 156612102 156612164 -86052189 + (TG)n Simple_repeat Simple_repeat 1 61 0 987 241 124 63 chr1 156612216 156612594 -86051759 + MLT1I LTR MaLR 1 401 -8 240 246 43 14 chr1 156612594 156612663 -86051690 - MIR SINE MIR -62 200 130 4444 65 14 0 chr1 156612993 156613559 -86050794 - L1PA8 LINE L1 -7 6165 5592 5346 61 1 1 chr1 156613568 156614237 -86050116 - L1PA8 LINE L1 0 6172 5504 7574 115 19 18 chr1 156614238 156615356 -86048997 - L1P3 LINE L1 -5338 1123 5 368 343 0 22 chr1 156615379 156615516 -86048837 - MIR3 SINE MIR -62 146 13 947 226 19 10 chr1 156615762 156615970 -86048383 - MER63A DNA MER1_type 0 210 1 2377 140 26 21 chr1 156616202 156616588 -86047765 + MER61D LTR ERV1 114 501 0 675 213 33 47 chr1 156616588 156616738 -86047615 + MER61D-int LTR ERV1 2 149 -5068 1748 113 0 64 chr1 156616752 156616897 -86047456 - AluSx SINE Alu -48 264 144 2169 125 0 0 chr1 156616897 156617202 -86047151 - AluSx SINE Alu -7 305 1 1748 113 0 64 chr1 156617202 156617338 -86047015 - AluSx SINE Alu -168 144 1 3134 152 39 13 chr1 156617349 156617882 -86046471 + MER61D-int LTR ERV1 1407 1953 -3633 1367 111 0 5 chr1 156617868 156618057 -86046296 + MER61D-int LTR ERV1 3806 3993 -1224 * 1991 133 20 0 chr1 156618060 156618354 -86045999 + MER61D-int LTR ERV1 4918 5217 0 2251 124 69 42 chr1 156618395 156618428 -86045925 + MER61D LTR ERV1 114 145 -356 2249 112 6 13 chr1 156618428 156618742 -86045611 + AluSx SINE Alu 1 312 0 2251 124 69 42 chr1 156618742 156619086 -86045267 + MER61D LTR ERV1 145 501 0 610 306 228 14 chr1 156619191 156619976 -86044377 + L2 LINE L2 1821 2773 -541 4099 172 39 67 chr1 156619979 156621077 -86043276 - L1MB5 LINE L1 0 6174 5109 473 222 170 7 chr1 156621094 156621229 -86043124 + MIR SINE MIR 105 261 -1 2407 94 0 0 chr1 156621519 156621817 -86042536 - AluSx SINE Alu -14 298 1 1856 195 67 31 chr1 156621982 156622433 -86041920 + MLT1C LTR MaLR 1 467 0 2144 93 32 0 chr1 156622689 156622968 -86041385 + AluSp SINE Alu 16 303 -10 741 279 29 10 chr1 156623574 156623782 -86040571 - LTR16A LTR ERVL -8 442 231 2267 289 56 34 chr1 156623846 156623894 -86040459 - HERV16 LTR ERVL -2697 2331 2286 4265 162 63 5 chr1 156623894 156624634 -86039719 - LTR39 LTR ERV1 0 783 1 2267 289 56 34 chr1 156624634 156626196 -86038157 - HERV16 LTR ERVL -2742 2286 589 900 190 11 17 chr1 156626216 156626395 -86037958 + LTR28 LTR ERV1 1 178 -842 1050 215 53 48 chr1 156626423 156626797 -86037556 + LTR27 LTR ERV1 121 636 0 1221 339 25 14 chr1 156626798 156627356 -86036997 - HERV16 LTR ERVL -4422 574 11 239 241 19 0 chr1 156627367 156627421 -86036932 - LTR16A LTR ERVL -5 445 391 1103 125 20 0 chr1 156627421 156627595 -86036758 + AluSp SINE Alu 142 313 0 751 265 182 38 chr1 156627595 156627941 -86036412 - LTR16A LTR ERVL -55 401 8 2004 140 0 0 chr1 156628378 156628670 -86035683 + AluSx SINE Alu 3 294 -18 784 164 8 0 chr1 156628856 156628984 -86035369 - FLAM_C SINE Alu -12 131 3 182 289 0 19 chr1 156629060 156629112 -86035241 - L2 LINE L2 -8 3264 3214 251 284 50 57 chr1 156629159 156629300 -86035053 - MLT1J LTR MaLR -25 486 347 235 94 0 0 chr1 156629341 156629373 -86034980 - MER53 DNA DNA -1 188 157 785 177 0 73 chr1 156629373 156629530 -86034823 - MER53 DNA DNA -8 181 14 198 0 0 0 chr1 156629530 156629552 -86034801 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2016 141 3 7 chr1 156629557 156629855 -86034498 - AluSx SINE Alu -15 297 1 785 177 0 73 chr1 156629855 156629883 -86034470 - MER53 DNA DNA -179 10 4 6134 119 16 9 chr1 156630915 156631675 -86032678 + L1MA4 LINE L1 5335 6104 -196 2086 88 85 0 chr1 156631675 156631947 -86032406 - AluSx SINE Alu -17 295 1 6134 119 16 9 chr1 156631947 156632144 -86032209 + L1MA4 LINE L1 6104 6298 -2 299 271 59 17 chr1 156632161 156632279 -86032074 - MLT1K LTR MaLR -92 496 374 2309 125 5 57 chr1 156632953 156633289 -86031064 + THE1B LTR MaLR 1 316 -48 2340 94 0 0 chr1 156633289 156633587 -86030766 - AluY SINE Alu -13 298 1 2309 125 5 57 chr1 156633587 156633634 -86030719 + THE1B LTR MaLR 316 364 0 2146 130 3 0 chr1 156633918 156634218 -86030135 + AluSx SINE Alu 3 303 -9 28 29 0 0 chr1 156634862 156634897 -86029456 + AT_rich Low_complexity Low_complexity 1 35 0 708 238 73 121 chr1 156634980 156635098 -86029255 + L1ME3 LINE L1 5449 5571 -591 2333 106 0 3 chr1 156635098 156635409 -86028944 + AluSx SINE Alu 1 310 -2 708 238 73 121 chr1 156635409 156635668 -86028685 + L1ME3 LINE L1 5571 5795 -367 1130 146 0 0 chr1 156635668 156635832 -86028521 + FRAM SINE Alu 1 164 -2 708 238 73 121 chr1 156635832 156635990 -86028363 + L1ME3 LINE L1 5795 5959 -203 1369 182 78 107 chr1 156636904 156637328 -86027025 + MLT1J LTR MaLR 1 409 -102 1966 148 0 0 chr1 156637328 156637619 -86026734 - AluJb SINE Alu 0 312 22 1369 182 78 107 chr1 156637619 156637717 -86026636 + MLT1J LTR MaLR 409 508 -3 2465 139 15 15 chr1 156637880 156638282 -86026071 - MER57A LTR ERV1 0 403 2 227 331 29 22 chr1 156638422 156638558 -86025795 + MER5A DNA MER1_type 47 183 -6 2398 72 13 13 chr1 156639527 156639831 -86024522 - AluY SINE Alu -7 304 1 911 210 93 80 chr1 156640082 156640151 -86024202 + MER2 DNA MER2_type 2 69 -276 2569 92 17 0 chr1 156640151 156640500 -86023853 - THE1A LTR MaLR 0 355 1 12074 81 11 6 chr1 156640500 156642073 -86022280 - THE1A-int LTR MaLR 0 1580 1 2716 91 8 0 chr1 156642073 156642425 -86021928 - THE1A LTR MaLR 0 355 1 911 210 93 80 chr1 156642425 156642455 -86021898 + MER2 DNA MER2_type 69 97 -248 2690 30 3 0 chr1 156642455 156642756 -86021597 + AluY SINE Alu 1 302 -9 911 210 93 80 chr1 156642756 156642977 -86021376 + MER2 DNA MER2_type 97 329 -16 212 137 0 78 chr1 156643100 156643151 -86021202 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 219 310 186 21 chr1 156643550 156643608 -86020745 + MIR SINE MIR 79 126 -136 1926 176 3 3 chr1 156643608 156643915 -86020438 + AluJb SINE Alu 2 308 -4 219 310 186 21 chr1 156643915 156644001 -86020352 + MIR SINE MIR 126 247 -15 225 320 50 0 chr1 156644234 156644334 -86020019 - MIR SINE MIR -71 137 33 255 175 0 0 chr1 156644955 156644995 -86019358 + MER57A LTR ERV1 295 334 -69 22 0 0 0 chr1 156644995 156645017 -86019336 + AT_rich Low_complexity Low_complexity 1 22 0 202 221 39 78 chr1 156645448 156645525 -86018828 - L2 LINE L2 -9 3263 3190 265 285 95 25 chr1 156645665 156645823 -86018530 + MIR SINE MIR 22 190 -72 341 276 49 32 chr1 156646516 156646639 -86017714 - MIR SINE MIR -99 163 39 2457 95 0 0 chr1 156646641 156646947 -86017406 - AluSx SINE Alu -6 306 1 711 233 112 30 chr1 156647033 156647407 -86016946 + MLT1J LTR MaLR 24 509 -2 409 284 200 5 chr1 156647656 156647846 -86016507 + MIR SINE MIR 20 246 -16 23 33 0 0 chr1 156648970 156649000 -86015353 + AT_rich Low_complexity Low_complexity 1 30 0 539 199 186 19 chr1 156649258 156649321 -86015032 - MER53 DNA DNA 0 189 138 2302 159 38 24 chr1 156649321 156649393 -86014960 + MSTA LTR MaLR 1 70 -358 2233 65 42 49 chr1 156649393 156649701 -86014652 + AluY SINE Alu 1 306 -5 2302 159 38 24 chr1 156649701 156650050 -86014303 + MSTA LTR MaLR 70 428 0 8404 168 75 7 chr1 156650050 156651596 -86012757 + MSTA-int LTR MaLR 1 1651 0 2496 161 47 0 chr1 156651596 156652005 -86012348 + MSTA LTR MaLR 1 428 0 539 199 186 19 chr1 156652005 156652100 -86012253 - MER53 DNA DNA -50 139 2 2066 202 81 51 chr1 156653545 156654115 -86010238 - L1ME3 LINE L1 -8 6154 5568 216 143 0 0 chr1 156654257 156654299 -86010054 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 1841 208 54 44 chr1 156654314 156654910 -86009443 - L1MC5 LINE L1 -61 7900 7299 225 217 0 0 chr1 156654945 156654991 -86009362 - L1MC4 LINE L1 -607 7435 7390 1904 158 37 57 chr1 156655611 156656017 -86008336 - L1MB2 LINE L1 -1 6170 5773 480 146 12 0 chr1 156656018 156656100 -86008253 - AluJo SINE Alu 0 312 230 991 141 0 7 chr1 156656101 156656243 -86008110 - AluJo SINE Alu -171 141 1 2245 132 28 122 chr1 156656246 156656471 -86007882 - L1MB2 LINE L1 -391 5780 5632 2708 45 0 0 chr1 156656471 156656782 -86007571 - AluYa5 SINE Alu 0 311 1 2245 132 28 122 chr1 156656782 156657087 -86007266 - L1MB2 LINE L1 -539 5632 5300 522 104 31 0 chr1 156657093 156657189 -86007164 + CT-rich Low_complexity Low_complexity 4 102 0 1923 150 0 21 chr1 156657189 156657521 -86006832 - AluJo SINE Alu 0 326 1 6153 192 19 19 chr1 156657522 156658773 -86005580 - L1MB2 LINE L1 -836 5310 4057 2347 125 0 0 chr1 156658773 156659085 -86005268 + AluSx SINE Alu 1 312 0 6153 192 19 19 chr1 156659085 156659129 -86005224 - L1MB2 LINE L1 -2088 4058 4015 2155 121 0 0 chr1 156659135 156659453 -86004900 - AluSg SINE Alu 0 318 1 180 0 0 0 chr1 156660079 156660099 -86004254 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 2258 116 0 0 chr1 156662375 156662677 -86001676 + AluSx SINE Alu 1 302 -10 197 279 0 29 chr1 156662873 156662941 -86001412 - L2 LINE L2 -340 2974 2909 375 23 0 0 chr1 156663928 156663989 -86000364 + (TG)n Simple_repeat Simple_repeat 1 105 0 375 23 0 0 chr1 156663989 156664033 -86000320 + (TG)n Simple_repeat Simple_repeat 1 44 0 2214 99 3 0 chr1 156664212 156664494 -85999859 + AluSx SINE Alu 1 283 -29 2186 119 0 7 chr1 156664557 156664859 -85999494 + AluSg SINE Alu 2 301 -9 237 65 0 0 chr1 156664859 156664890 -85999463 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 * 510 71 20 20 chr1 156664888 156664986 -85999367 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 338 162 27 40 chr1 156664986 156665060 -85999293 - MLT1L LTR MaLR -70 545 473 362 270 17 17 chr1 156665075 156665190 -85999163 - L2 LINE L2 -5 3308 3194 461 263 178 42 chr1 156665190 156665426 -85998927 - MLT1L LTR MaLR -200 415 148 237 246 119 87 chr1 156665449 156665517 -85998836 - MER5B DNA MER1_type -41 137 73 1299 170 135 8 chr1 156665517 156665776 -85998577 - AluJo SINE Alu -10 292 1 237 246 119 87 chr1 156665776 156665833 -85998520 - MER5B DNA MER1_type -105 73 8 2050 148 0 13 chr1 156666515 156666820 -85997533 - AluJb SINE Alu -11 301 1 338 195 0 26 chr1 156666820 156666897 -85997456 - L1MC4 LINE L1 -9 8033 7959 * 2006 231 70 12 chr1 156666888 156667472 -85996881 - L1MC4 LINE L1 -305 7737 7120 1868 142 51 14 chr1 156667478 156667773 -85996580 - AluSg SINE Alu 0 310 5 1107 200 27 18 chr1 156667783 156668008 -85996345 + MSTD LTR MaLR 3 229 -167 216 0 0 0 chr1 156668047 156668071 -85996282 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 635 191 35 0 chr1 156668073 156668188 -85996165 - AluJb SINE Alu -192 120 2 886 171 20 0 chr1 156668207 156668353 -85996000 + MSTD LTR MaLR 248 396 0 2850 219 58 9 chr1 156668353 156668988 -85995365 - L1MC4 LINE L1 -916 7126 6461 189 0 0 0 chr1 156669285 156669306 -85995047 + (TG)n Simple_repeat Simple_repeat 2 22 0 216 48 72 60 chr1 156669365 156669448 -85994905 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 619 150 61 95 chr1 156669805 156669952 -85994401 - FLAM_C SINE Alu 0 143 2 255 143 0 0 chr1 156669953 156669995 -85994358 - L2 LINE L2 -6 3307 3266 2425 103 0 0 chr1 156670056 156670366 -85993987 - AluSg SINE Alu 0 310 1 2045 103 11 11 chr1 156670366 156670648 -85993705 - AluSg SINE Alu -15 295 14 472 263 30 15 chr1 156671709 156671842 -85992511 - MIR SINE MIR -120 142 8 180 77 0 0 chr1 156672576 156672602 -85991751 + (TCC)n Simple_repeat Simple_repeat 2 27 0 192 77 0 0 chr1 156672611 156672637 -85991716 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 300 237 149 18 chr1 156672809 156672923 -85991430 + HAL1 LINE L1 1083 1211 -1296 230 179 18 0 chr1 156673157 156673213 -85991140 + CT-rich Low_complexity Low_complexity 2 58 0 288 0 0 0 chr1 156673718 156673750 -85990603 + (A)n Simple_repeat Simple_repeat 1 32 0 1890 168 0 10 chr1 156674481 156674784 -85989569 - AluJb SINE Alu -12 300 1 207 70 70 0 chr1 156675770 156675813 -85988540 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 212 237 0 0 chr1 156676516 156676554 -85987799 + MER91 DNA MER1_type 44 81 -115 234 261 42 109 chr1 156676977 156677096 -85987257 + L2 LINE L2 3201 3311 -2 270 0 0 0 chr1 156677938 156677968 -85986385 + (TG)n Simple_repeat Simple_repeat 2 31 0 2212 109 33 0 chr1 156679573 156679876 -85984477 - AluSq SINE Alu 0 313 1 794 337 96 16 chr1 156679898 156680275 -85984078 - L2 LINE L2 -8 3264 2858 315 0 0 0 chr1 156680727 156680762 -85983591 + (CA)n Simple_repeat Simple_repeat 1 35 0 246 291 241 7 chr1 156681292 156681433 -85982920 - MIR SINE MIR -2 260 87 390 239 84 97 chr1 156681798 156681932 -85982421 - MIR3 SINE MIR -23 185 51 2264 85 0 0 chr1 156681932 156682260 -85982093 + AluY SINE Alu 1 328 0 390 239 84 97 chr1 156682260 156682279 -85982074 - MIR3 SINE MIR -157 51 33 2330 112 0 3 chr1 156682477 156682790 -85981563 - AluSx SINE Alu 0 312 1 790 213 58 106 chr1 156683138 156683548 -85980805 - MLT1C LTR MaLR 0 467 51 1950 163 3 3 chr1 156683548 156683843 -85980510 - AluJb SINE Alu -14 298 4 790 213 58 106 chr1 156683843 156683887 -85980466 - MLT1C LTR MaLR -416 51 6 2316 101 3 0 chr1 156684433 156684731 -85979622 + AluSp SINE Alu 1 299 -14 837 255 142 28 chr1 156684861 156685214 -85979139 - MLT1I LTR MaLR -9 400 8 187 310 70 10 chr1 156685221 156685321 -85979032 - L2 LINE L2 -217 3055 2950 264 313 75 34 chr1 156686022 156686169 -85978184 + MIR SINE MIR 93 245 -17 741 235 126 17 chr1 156686605 156686835 -85977518 + MIR SINE MIR 6 260 -2 182 379 0 0 chr1 156686897 156686955 -85977398 + L3b LINE CR1 1515 1572 -11 2271 108 3 0 chr1 156687194 156687481 -85976872 + AluSp SINE Alu 1 288 -25 453 19 0 0 chr1 156687481 156687535 -85976818 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1304 241 80 11 chr1 156687948 156688297 -85976056 + L3 LINE CR1 519 891 -686 246 216 39 0 chr1 156688300 156688351 -85976002 - L2 LINE L2 0 3313 3261 186 43 0 0 chr1 156689443 156689466 -85974887 + (A)n Simple_repeat Simple_repeat 1 23 0 1069 115 72 48 chr1 156689518 156689727 -85974626 - L1PA8 LINE L1 0 6172 5959 2251 115 0 0 chr1 156689852 156690147 -85974206 + AluSq SINE Alu 9 303 -10 865 143 8 8 chr1 156690303 156690436 -85973917 + FLAM_C SINE Alu 1 133 0 1610 161 13 65 chr1 156690443 156690753 -85973600 + AluJo SINE Alu 7 300 -12 586 291 96 29 chr1 156691078 156691391 -85972962 - L1ME4a LINE L1 -213 5908 5575 449 337 32 88 chr1 156691876 156692250 -85972103 - L2 LINE L2 0 3272 2920 208 309 196 13 chr1 156693014 156693162 -85971191 + MIR SINE MIR 41 207 -55 2002 184 63 0 chr1 156693867 156694232 -85970121 - MLT1B LTR MaLR -2 388 1 2528 82 0 0 chr1 156695015 156695318 -85969035 - AluSx SINE Alu -9 303 1 542 331 99 52 chr1 156695711 156696274 -85968079 - L1ME4a LINE L1 -237 5884 5299 227 236 73 89 chr1 156696370 156696493 -85967860 - MER5B DNA MER1_type 0 178 58 580 342 59 28 chr1 156696549 156696938 -85967415 - L2 LINE L2 -6 3266 2866 * 732 313 47 4 chr1 156696928 156697161 -85967192 + MIR SINE MIR 20 262 0 1947 152 90 15 chr1 156697174 156697563 -85966790 - LTR47B LTR ERVL 0 443 26 225 369 63 40 chr1 156697651 156697903 -85966450 - L2 LINE L2 -583 2731 2474 222 281 187 50 chr1 156699111 156699250 -85965103 - MIR SINE MIR -77 185 28 26 30 0 0 chr1 156699338 156699371 -85964982 + AT_rich Low_complexity Low_complexity 1 33 0 517 202 149 87 chr1 156699963 156700171 -85964182 + MIR SINE MIR 36 256 -6 219 69 0 0 chr1 156700888 156700917 -85963436 + (CA)n Simple_repeat Simple_repeat 1 29 0 1285 122 0 0 chr1 156700918 156701090 -85963263 - FRAM SINE Alu -6 170 1 670 276 85 69 chr1 156701346 156701406 -85962947 - L1MC4a LINE L1 -597 5583 5525 2147 128 0 28 chr1 156701406 156701727 -85962626 - AluSx SINE Alu 0 312 1 670 276 85 69 chr1 156701727 156702277 -85962076 - L1MC4a LINE L1 -655 5525 5267 590 278 121 14 chr1 156703090 156703313 -85961040 - MIR SINE MIR -2 260 14 1519 178 33 40 chr1 156703467 156703770 -85960583 - AluJo SINE Alu -11 301 1 454 273 87 44 chr1 156704133 156704316 -85960037 - MIR SINE MIR -38 224 34 180 111 0 0 chr1 156705396 156705423 -85958930 + (TC)n Simple_repeat Simple_repeat 2 28 0 187 298 0 0 chr1 156705971 156706018 -85958335 - MIR3 SINE MIR -34 174 128 902 284 5 5 chr1 156706827 156707049 -85957304 - MIR SINE MIR 0 262 41 489 262 67 24 chr1 156707062 156707226 -85957127 - MIR SINE MIR -81 181 11 550 178 0 97 chr1 156707465 156707618 -85956735 - L1MB7 LINE L1 -2 6182 6042 977 106 0 0 chr1 156707631 156707754 -85956599 + AluSq/x SINE Alu 13 135 -178 2092 146 7 0 chr1 156707754 156708063 -85956290 + AluSx SINE Alu 1 311 -1 3211 211 50 6 chr1 156708063 156708803 -85955550 - L1ME1 LINE L1 -110 6056 5285 2137 129 0 0 chr1 156708814 156709108 -85955245 - AluSx SINE Alu -18 294 1 643 310 82 16 chr1 156709164 156709409 -85954944 + MIR SINE MIR 2 262 0 1002 99 280 16 chr1 156709785 156709967 -85954386 - MER30 DNA MER1_type 0 230 1 244 200 22 0 chr1 156710867 156710912 -85953441 - L2 LINE L2 -1 3271 3226 2113 117 24 3 chr1 156711005 156711296 -85953057 + AluSx SINE Alu 1 297 -15 280 291 140 68 chr1 156711304 156711717 -85952636 + L2 LINE L2 2871 3313 0 319 282 87 37 chr1 156713701 156713942 -85950411 + L2 LINE L2 2369 2621 -693 262 273 26 13 chr1 156714086 156714163 -85950190 + L2 LINE L2 3215 3292 -21 312 279 95 77 chr1 156714607 156714829 -85949524 + L2 LINE L2 2596 2821 -493 233 288 42 25 chr1 156714920 156715038 -85949315 + L2 LINE L2 2987 3106 -166 204 67 0 0 chr1 156715066 156715096 -85949257 + (TCC)n Simple_repeat Simple_repeat 2 31 0 481 224 127 42 chr1 156715140 156715305 -85949048 + L2 LINE L2 3121 3299 -14 2033 177 89 40 chr1 156715315 156715796 -85948557 - MLT1D LTR MaLR 0 505 1 306 235 78 85 chr1 156715915 156716068 -85948285 - MIR SINE MIR -52 210 59 210 191 24 0 chr1 156716170 156716212 -85948141 + GA-rich Low_complexity Low_complexity 2 44 0 426 254 26 42 chr1 156716518 156716677 -85947676 - MIR SINE MIR -59 149 37 608 303 41 103 chr1 156716685 156717151 -85947202 + L2 LINE L2 2836 3272 0 2090 179 19 7 chr1 156717457 156717881 -85946472 - L1MB8 LINE L1 -5 6173 5745 2691 97 0 24 chr1 156717881 156717921 -85946432 - THE1B LTR MaLR 0 364 325 2336 114 0 0 chr1 156717921 156718229 -85946124 + AluY SINE Alu 1 308 -3 2691 97 0 24 chr1 156718229 156718561 -85945792 - THE1B LTR MaLR -39 325 1 1150 244 8 8 chr1 156719002 156719244 -85945109 - MIR SINE MIR 0 262 21 329 242 194 16 chr1 156719407 156719531 -85944822 - MIR3 SINE MIR -62 146 1 2395 132 132 96 chr1 156720379 156721018 -85943335 - MER4A LTR ERV1 0 664 3 1113 284 134 32 chr1 156721132 156721839 -85942514 + L2 LINE L2 2128 2906 -408 340 263 190 15 chr1 156721957 156722094 -85942259 + L2 LINE L2 3105 3265 -48 232 314 167 6 chr1 156722147 156722303 -85942050 + MIR SINE MIR 3 183 -79 195 42 0 0 chr1 156723401 156723425 -85940928 + (GGA)n Simple_repeat Simple_repeat 1 24 0 1603 162 39 29 chr1 156723460 156723769 -85940584 - AluJo SINE Alu 0 312 1 183 188 62 94 chr1 156723770 156723834 -85940519 - L2 LINE L2 -27 3245 3184 2323 105 7 0 chr1 156725169 156725464 -85938889 - AluSx SINE Alu -15 297 1 378 0 0 0 chr1 156725665 156725707 -85938646 + (TG)n Simple_repeat Simple_repeat 2 43 0 569 288 86 30 chr1 156726172 156726407 -85937946 - MIR SINE MIR 0 262 15 195 180 40 20 chr1 156726418 156726468 -85937885 - L2 LINE L2 0 3272 3222 2292 102 3 0 chr1 156727589 156727892 -85936461 + AluSp SINE Alu 1 304 -9 252 286 95 12 chr1 156729355 156729439 -85934914 + MIR3 SINE MIR 70 160 -48 2556 59 3 0 chr1 156730239 156730544 -85933809 + AluY SINE Alu 1 306 -5 182 239 68 45 chr1 156731485 156731573 -85932780 - MIR3 SINE MIR -7 201 112 237 257 108 27 chr1 156732117 156732191 -85932162 + L2 LINE L2 3188 3267 -5 2324 105 23 0 chr1 156732202 156732507 -85931846 + AluSx SINE Alu 1 312 0 1854 179 0 0 chr1 156733401 156733692 -85930661 + AluJb SINE Alu 14 304 -8 828 193 91 0 chr1 156734074 156734261 -85930092 - MER20 DNA MER1_type 0 219 16 749 163 0 57 chr1 156735515 156735656 -85928697 - FLAM_A SINE Alu 0 133 1 266 273 22 81 chr1 156735954 156736094 -85928259 - MIR SINE MIR -25 183 45 1487 170 75 11 chr1 156738535 156738817 -85925536 - AluJb SINE Alu -12 300 1 1048 220 57 101 chr1 156739309 156739448 -85924905 - LTR37B LTR ERV1 -12 456 312 1864 167 3 3 chr1 156739448 156739747 -85924606 - AluJo SINE Alu -12 300 2 1048 220 57 101 chr1 156739747 156740084 -85924269 - LTR37B LTR ERV1 -156 312 1 2635 45 3 0 chr1 156741765 156742094 -85922259 - AluY SINE Alu 0 330 1 844 224 53 76 chr1 156742236 156742696 -85921657 - MLT1C LTR MaLR -20 485 34 845 288 150 14 chr1 156742700 156743120 -85921233 + L2 LINE L2 2837 3313 0 2492 73 0 22 chr1 156743364 156743681 -85920672 + AluY SINE Alu 2 311 0 238 290 9 84 chr1 156744220 156744249 -85920104 - MIR3 SINE MIR -38 170 140 2095 128 0 0 chr1 156744249 156744602 -85919751 - AluSx SINE Alu 0 353 1 238 290 9 84 chr1 156744602 156744677 -85919676 - MIR3 SINE MIR -68 140 72 271 313 36 0 chr1 156745044 156745127 -85919226 - L2 LINE L2 -3 3269 3184 2164 94 14 0 chr1 156745495 156745816 -85918537 + AluSx SINE Alu 3 327 0 758 169 0 0 chr1 156746368 156746486 -85917867 + FLAM_C SINE Alu 1 118 -15 791 217 80 0 chr1 156747350 156747525 -85916828 + MIR SINE MIR 47 235 -27 237 246 14 0 chr1 156749270 156749339 -85915014 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 230 174 0 0 chr1 156750394 156750440 -85913913 - MLT1K LTR MaLR -22 566 521 1895 129 9 94 chr1 156750648 156750989 -85913364 - AluSx SINE Alu 0 312 1 470 275 122 51 chr1 156751009 156751304 -85913049 - MLT1K LTR MaLR -266 322 7 242 128 0 0 chr1 156751524 156751563 -85912790 + MARNA DNA Mariner 193 231 -355 321 276 171 0 chr1 156751589 156751694 -85912659 + L2 LINE L2 3150 3272 0 2102 124 24 0 chr1 156752381 156752679 -85911674 + AluSx SINE Alu 1 305 -7 2495 93 0 0 chr1 156752766 156753077 -85911276 + AluSx SINE Alu 1 311 -1 339 270 72 30 chr1 156753567 156753830 -85910523 - L1ME4a LINE L1 -1 6120 5847 329 358 153 0 chr1 156754939 156755011 -85909342 + L1ME LINE L1 5604 5664 -457 2049 93 12 75 chr1 156755011 156755333 -85909020 + AluJb SINE Alu 1 302 -10 329 358 153 0 chr1 156755333 156755450 -85908903 + L1ME LINE L1 5664 5822 -299 2322 71 37 0 chr1 156755825 156756122 -85908231 + AluSp SINE Alu 1 308 -5 563 257 24 42 chr1 156756971 156757149 -85907204 + MIR SINE MIR 46 222 -40 24 0 0 0 chr1 156757330 156757354 -85906999 + GC_rich Low_complexity Low_complexity 1 24 0 654 0 0 0 chr1 156757721 156757793 -85906560 + tRNA-Pro-CCG tRNA tRNA 1 72 -3 658 0 0 0 chr1 156758484 156758556 -85905797 - tRNA-Pro-CCT tRNA tRNA -3 72 1 1978 72 62 46 chr1 156759303 156759608 -85904745 - AluSq SINE Alu -3 310 1 2407 63 33 3 chr1 156759619 156759921 -85904432 - AluY SINE Alu 0 311 1 543 97 0 0 chr1 156760035 156760107 -85904246 - AluJ/FRAM SINE Alu -20 292 221 2889 200 49 0 chr1 156760119 156760650 -85903703 - MER41D LTR ERV1 0 557 1 204 135 0 0 chr1 156760776 156760813 -85903540 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1996 98 49 7 chr1 156760818 156761105 -85903248 - AluSg SINE Alu -11 299 1 691 125 0 18 chr1 156762815 156762927 -85901426 - AluSg SINE Alu -1 311 202 2475 147 79 36 chr1 156762927 156763397 -85900956 - LTR2B LTR ERV1 0 490 1 1544 68 10 19 chr1 156763397 156763602 -85900751 - AluSg SINE Alu -107 203 1 275 276 9 26 chr1 156765113 156765229 -85899124 + (CGG)n Simple_repeat Simple_repeat 3 116 0 217 271 0 0 chr1 156766911 156766959 -85897394 - L2 LINE L2 -3 3269 3222 481 204 0 56 chr1 156766976 156767084 -85897269 - FLAM_A SINE Alu -34 108 7 855 304 121 27 chr1 156767242 156767982 -85896371 - L2 LINE L2 -424 2890 2004 1523 273 152 25 chr1 156768067 156768299 -85896054 + L2 LINE L2 2401 2602 -711 1843 101 13 91 chr1 156768299 156768467 -85895886 - AluSx SINE Alu -35 277 140 2310 102 0 13 chr1 156768467 156768781 -85895572 - AluSg SINE Alu 0 310 1 1843 101 13 91 chr1 156768781 156768910 -85895443 - AluSx SINE Alu -172 140 3 1523 273 152 25 chr1 156768910 156769480 -85894873 + L2 LINE L2 2602 3306 -7 205 259 281 36 chr1 156769839 156769978 -85894375 - L2 LINE L2 0 3313 3141 21 0 0 0 chr1 156770070 156770091 -85894262 + AT_rich Low_complexity Low_complexity 1 21 0 266 240 124 23 chr1 156770199 156770328 -85894025 + L2 LINE L2 2494 2635 -679 1710 118 23 138 chr1 156770863 156771031 -85893322 - AluYb8 SINE Alu 0 308 122 2088 102 44 7 chr1 156771031 156771325 -85893028 - AluSq SINE Alu -8 305 1 1710 118 23 138 chr1 156771325 156771343 -85893010 - AluYb8 SINE Alu -186 122 104 201 74 0 0 chr1 156771343 156771370 -85892983 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1143 75 0 0 chr1 156771371 156771504 -85892849 - AluSq/x SINE Alu -180 133 1 2003 134 0 20 chr1 156771980 156772286 -85892067 + AluSx SINE Alu 1 300 -12 672 261 149 22 chr1 156772769 156772991 -85891362 - MIR SINE MIR -12 250 1 2044 134 13 10 chr1 156773263 156773570 -85890783 - AluSq SINE Alu 0 313 6 1862 156 0 7 chr1 156774149 156774432 -85889921 + AluSx SINE Alu 1 281 -31 * 2466 69 0 7 chr1 156774431 156774734 -85889619 - AluY SINE Alu -10 301 1 513 183 0 0 chr1 156774781 156774874 -85889479 + FLAM_C SINE Alu 49 141 -2 1214 258 33 9 chr1 156774882 156775211 -85889142 + MER46C DNA MER2_type 2 338 0 613 164 60 0 chr1 156775304 156775420 -85888933 + FRAM SINE Alu 54 176 0 886 223 6 23 chr1 156775434 156775609 -85888744 - FAM SINE Alu 0 175 4 1673 146 39 0 chr1 156775615 156775869 -85888484 - AluSx SINE Alu -13 299 36 2808 198 8 6 chr1 156775963 156776459 -85887894 - ERVL-D LTR ERVL -3919 1845 1349 2126 130 10 0 chr1 156776459 156776752 -85887601 + AluSx SINE Alu 1 296 -16 1085 145 13 0 chr1 156776752 156776911 -85887442 + AluJo/FRAM SINE Alu 134 294 -18 4196 242 66 14 chr1 156776911 156776971 -85887382 - ERVL-D LTR ERVL -4333 1321 1266 2515 70 0 0 chr1 156776971 156777271 -85887082 + AluY SINE Alu 1 300 -11 4196 242 66 14 chr1 156777271 156778450 -85885903 - ERVL-D LTR ERVL -4388 1266 5 1522 195 27 36 chr1 156778450 156778853 -85885500 - MLT2D LTR ERVL -6 458 70 473 290 104 97 chr1 156778918 156779878 -85884475 + L2 LINE L2 1792 2758 -556 348 357 254 4 chr1 156779956 156780236 -85884117 + L2 LINE L2 2914 3263 -9 2191 79 11 0 chr1 156780908 156781220 -85883133 - AluY SINE Alu 0 315 1 3318 82 7 28 chr1 156781495 156781932 -85882421 + MSTA LTR MaLR 1 428 0 1812 160 11 3 chr1 156781952 156782239 -85882114 - AluSx SINE Alu -23 289 1 182 65 65 0 chr1 156782249 156782280 -85882073 + (CATA)n Simple_repeat Simple_repeat 2 34 0 254 182 0 52 chr1 156782280 156782357 -85881996 + LTR66 LTR ERVL 399 471 -139 226 224 52 0 chr1 156782365 156782423 -85881930 + L2 LINE L2 3208 3268 -4 366 349 128 9 chr1 156782795 156783122 -85881231 + L2 LINE L2 784 1149 -2165 1449 288 144 46 chr1 156783138 156784023 -85880330 + L2 LINE L2 1630 2427 -887 1899 146 7 17 chr1 156784023 156784318 -85880035 - AluJo SINE Alu -20 292 1 2038 129 20 0 chr1 156784327 156784621 -85879732 - AluSx SINE Alu -12 300 1 1449 288 144 46 chr1 156784621 156784744 -85879609 + L2 LINE L2 2434 2748 -566 2000 151 0 0 chr1 156784747 156785039 -85879314 + AluJb SINE Alu 1 292 -20 1885 102 31 0 chr1 156785045 156785299 -85879054 + AluSx SINE Alu 39 300 -12 5596 209 28 9 chr1 156785550 156786211 -85878142 - L1 LINE L1 -908 5238 4542 2322 79 10 0 chr1 156786211 156786502 -85877851 - AluSc SINE Alu -15 294 1 5596 209 28 9 chr1 156786502 156787074 -85877279 - L1 LINE L1 -1604 4542 3982 504 203 90 8 chr1 156787080 156787213 -85877140 - MIR SINE MIR -37 225 82 2292 106 0 0 chr1 156787398 156787700 -85876653 + AluSx SINE Alu 1 302 -10 1755 174 70 58 chr1 156787880 156788293 -85876060 - LTR52 LTR ERVL -3 418 1 574 221 101 0 chr1 156788872 156789030 -85875323 + MER104 DNA Tc2 6 179 -1 223 350 68 42 chr1 156789110 156789347 -85875006 - L2 LINE L2 -217 3055 2813 180 140 100 40 chr1 156789504 156789554 -85874799 + L3 LINE CR1 1374 1426 -151 222 313 134 0 chr1 156789973 156790085 -85874268 + L3b LINE CR1 1103 1229 -354 1522 182 39 18 chr1 156790225 156790511 -85873842 - AluJb SINE Alu -20 292 1 1929 168 81 6 chr1 156790733 156791798 -85872555 - L1MB7 LINE L1 0 6184 4968 502 255 26 13 chr1 156791799 156791952 -85872401 - L1MC4a LINE L1 -1914 5894 5740 291 332 29 0 chr1 156792678 156792795 -85871558 + MIR3 SINE MIR 52 173 -35 2716 215 62 52 chr1 156793088 156793166 -85871187 - L1MC4 LINE L1 -1 8041 7965 2240 98 0 3 chr1 156793166 156793498 -85870855 - AluSq SINE Alu 0 331 1 2716 215 62 52 chr1 156793498 156794241 -85870112 - L1MC4 LINE L1 -77 7965 7211 2543 65 0 3 chr1 156794385 156794692 -85869661 + AluSx SINE Alu 2 307 -5 2372 86 0 13 chr1 156796623 156796926 -85867427 - AluSx SINE Alu -13 299 1 1969 141 7 3 chr1 156796995 156797294 -85867059 - AluSx SINE Alu -11 301 2 668 132 0 53 chr1 156797753 156797867 -85866486 + MER5B DNA MER1_type 27 134 -44 1441 153 61 8 chr1 156797877 156798138 -85866215 - L1MC1 LINE L1 -20 6313 6039 26 0 0 0 chr1 156798169 156798195 -85866158 + AT_rich Low_complexity Low_complexity 1 26 0 1461 165 105 4 chr1 156799156 156799423 -85864930 - AluJb SINE Alu -18 294 1 225 0 0 0 chr1 156799426 156799451 -85864902 + (T)n Simple_repeat Simple_repeat 1 25 0 213 132 0 0 chr1 156799688 156799726 -85864627 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 375 271 9 37 chr1 156799734 156799841 -85864512 - L2 LINE L2 -7 3265 3162 305 285 109 42 chr1 156800394 156800587 -85863766 - L1ME3A LINE L1 0 6170 5965 2104 129 0 16 chr1 156800864 156801167 -85863186 + AluSx SINE Alu 1 298 -14 210 295 0 0 chr1 156801469 156801547 -85862806 + T-rich Low_complexity Low_complexity 1 78 0 203 156 0 0 chr1 156802702 156802734 -85861619 + L2 LINE L2 1963 1994 -1320 5392 254 125 36 chr1 156802820 156803187 -85861166 - L2 LINE L2 -410 2904 2571 2160 84 3 7 chr1 156803187 156803499 -85860854 - AluY SINE Alu 0 311 1 5392 254 125 36 chr1 156803499 156803744 -85860609 - L2 LINE L2 -743 2571 2349 423 0 0 0 chr1 156803744 156803791 -85860562 + (TG)n Simple_repeat Simple_repeat 2 48 0 5392 254 125 36 chr1 156803791 156805091 -85859262 - L2 LINE L2 -965 2349 1166 1252 150 42 19 chr1 156805091 156805304 -85859049 + MER20 DNA MER1_type 2 219 0 2528 161 10 5 chr1 156805314 156805712 -85858641 - MER57A LTR ERV1 -3 400 1 5392 254 125 36 chr1 156805712 156805871 -85858482 - L2 LINE L2 -2156 1158 634 2189 91 54 3 chr1 156806229 156806527 -85857826 + AluSq SINE Alu 1 313 0 3372 147 37 13 chr1 156807724 156808323 -85856030 + L1MC2 LINE L1 5732 6344 0 310 290 47 0 chr1 156809375 156809482 -85854871 + MIR SINE MIR 116 227 -35 513 202 188 58 chr1 156809916 156810124 -85854229 - MER106A DNA MER1_type 0 236 2 207 0 0 0 chr1 156810789 156810812 -85853541 + (T)n Simple_repeat Simple_repeat 1 23 0 369 0 0 0 chr1 156810851 156810892 -85853461 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 199 319 168 0 chr1 156811663 156811776 -85852577 - L2 LINE L2 -5 3267 3136 374 309 96 39 chr1 156811997 156812177 -85852176 + MIR SINE MIR 7 193 -66 2098 246 45 22 chr1 156812177 156812684 -85851669 + LTR40a LTR ERVL 1 519 0 211 288 210 42 chr1 156812796 156813181 -85851172 - L2 LINE L2 -678 2636 2187 282 330 62 23 chr1 156813716 156813892 -85850461 + MIR SINE MIR 20 202 -60 4654 100 53 37 chr1 156813999 156815155 -85849198 - SVA Other Other -955 1384 16 794 152 23 23 chr1 156816785 156816917 -85847436 + FLAM_A SINE Alu 11 142 0 26 0 0 0 chr1 156819004 156819030 -85845323 + AT_rich Low_complexity Low_complexity 1 26 0 251 48 0 48 chr1 156819256 156819298 -85845055 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 414 246 85 31 chr1 156819942 156820072 -85844281 - MIR3 SINE MIR -51 157 21 2844 275 50 63 chr1 156820282 156821037 -85843316 + L1MEc LINE L1 77 840 -5556 2384 85 0 3 chr1 156821037 156821331 -85843022 + AluSg SINE Alu 1 293 -17 2844 275 50 63 chr1 156821331 156821374 -85842979 + L1MEc LINE L1 840 882 -5514 738 208 8 23 chr1 156821374 156821494 -85842859 + FLAM_A SINE Alu 1 120 -182 450 108 0 0 chr1 156821494 156821568 -85842785 + (TGGA)n Simple_repeat Simple_repeat 4 77 0 2844 275 50 63 chr1 156821577 156821928 -85842425 + L1MEc LINE L1 882 1212 -5184 1590 120 0 5 chr1 156821928 156822145 -85842208 + AluSg/x SINE Alu 94 309 -3 2844 275 50 63 chr1 156822145 156822282 -85842071 + L1MEc LINE L1 1212 1349 -5047 2196 119 0 3 chr1 156822299 156822594 -85841759 + AluSx SINE Alu 2 295 -17 1081 208 38 4 chr1 156822594 156822834 -85841519 + L1MEc LINE L1 1859 2106 -4290 232 118 0 0 chr1 156822859 156822893 -85841460 + L1M3 LINE L1 5818 5851 -332 627 244 75 0 chr1 156822912 156823113 -85841240 + L1MEc LINE L1 2405 2620 -3595 3534 220 54 40 chr1 156823122 156823403 -85840950 + L1MEc LINE L1 2122 2398 -3817 2726 157 39 8 chr1 156823403 156823893 -85840460 + L1MB2 LINE L1 5657 6161 -10 3534 220 54 40 chr1 156823893 156824733 -85839620 + L1MEc LINE L1 2398 3220 -2995 1152 262 58 48 chr1 156824725 156825538 -85838815 - L1MEd LINE L1 -4865 1254 574 * 2107 196 83 5 chr1 156825585 156826018 -85838335 + MLT1D LTR MaLR 3 469 -36 638 167 49 14 chr1 156826018 156826162 -85838191 - HAL1 LINE L1 -874 1633 1485 500 284 40 11 chr1 156826525 156826701 -85837652 - MIR SINE MIR -21 241 61 1597 247 34 56 chr1 156828051 156828605 -85835748 - MLT1H LTR MaLR 0 549 8 2476 64 0 3 chr1 156828791 156829089 -85835264 - AluY SINE Alu -14 297 1 467 265 61 28 chr1 156829319 156829500 -85834853 - MIR SINE MIR 0 262 76 271 255 78 29 chr1 156830545 156830647 -85833706 - L1MC5 LINE L1 -44 7917 7811 727 173 15 30 chr1 156831876 156832009 -85832344 - FLAM_A SINE Alu -2 131 1 939 302 77 14 chr1 156833864 156834295 -85830058 + L2 LINE L2 2856 3313 0 250 212 178 34 chr1 156834305 156834423 -85829930 - L2 LINE L2 0 3272 3138 237 257 46 83 chr1 156834545 156834654 -85829699 - MIR SINE MIR -149 113 9 1323 100 11 6 chr1 156835637 156835817 -85828536 - AluSg/x SINE Alu -21 291 111 358 161 0 0 chr1 156835817 156835873 -85828480 - Alu SINE Alu -245 56 1 2127 139 43 68 chr1 156836050 156836442 -85827911 + MSTA LTR MaLR 1 382 -46 2261 88 3 14 chr1 156836442 156836767 -85827586 - AluSx SINE Alu 0 312 1 2127 139 43 68 chr1 156836767 156836813 -85827540 + MSTA LTR MaLR 382 428 0 535 250 110 13 chr1 156837711 156837947 -85826406 - L1MC5 LINE L1 -47 7914 7656 198 0 0 0 chr1 156838091 156838113 -85826240 + (T)n Simple_repeat Simple_repeat 1 22 0 2243 110 13 0 chr1 156838271 156838571 -85825782 - AluSp SINE Alu -9 304 1 2331 85 3 28 chr1 156839563 156839882 -85824471 + AluSx SINE Alu 1 311 -1 258 217 0 0 chr1 156840879 156840925 -85823428 - MER3 DNA MER1_type 0 209 164 207 0 0 0 chr1 156840926 156840949 -85823404 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2393 96 0 3 chr1 156841010 156841311 -85823042 - AluSx SINE Alu -12 300 1 1650 149 4 50 chr1 156841315 156841596 -85822757 - AluJo SINE Alu -19 293 26 235 56 0 148 chr1 156841596 156841614 -85822739 + AluJo/FRAM SINE Alu 88 107 -195 5091 82 5 1 chr1 156841614 156842272 -85822081 - PABL_A LTR ERV1 0 660 1 235 56 0 148 chr1 156842272 156842307 -85822046 + AluJo/FRAM SINE Alu 107 133 -169 944 193 0 0 chr1 156842313 156842479 -85821874 + FRAM SINE Alu 1 166 0 310 77 0 0 chr1 156842479 156842518 -85821835 - AluJo SINE Alu -263 40 2 785 186 12 19 chr1 156842518 156842679 -85821674 - MER3 DNA MER1_type -49 160 1 1288 171 43 59 chr1 156842990 156843294 -85821059 + AluJo SINE Alu 1 299 -13 1970 108 47 24 chr1 156844277 156844574 -85819779 - AluSx SINE Alu -8 304 1 724 165 8 45 chr1 156844578 156844711 -85819642 - FLAM_C SINE Alu -5 128 1 625 226 124 5 chr1 156845097 156845116 -85819237 - MIR SINE MIR -46 216 201 1651 165 168 11 chr1 156845116 156845486 -85818867 - MSTA LTR MaLR 0 428 1 625 226 124 5 chr1 156845486 156845652 -85818701 - MIR SINE MIR -61 201 9 2262 117 0 0 chr1 156845824 156846122 -85818231 + AluSq SINE Alu 1 298 -15 405 221 127 66 chr1 156846567 156846748 -85817605 - MIR3 SINE MIR -8 200 9 446 148 16 49 chr1 156846803 156846925 -85817428 + C-rich Low_complexity Low_complexity 4 121 0 4809 158 49 9 chr1 156847058 156847935 -85816418 - L1MC1 LINE L1 0 6333 5422 9331 98 23 45 chr1 156848639 156850056 -85814297 - SVA Other Other -1 1385 1 1569 177 3 43 chr1 156850072 156850372 -85813981 - AluSx SINE Alu -24 288 1 381 163 50 0 chr1 156850410 156850490 -85813863 - MIR SINE MIR -80 182 99 640 329 112 11 chr1 156850544 156850900 -85813453 + L3 LINE CR1 958 1349 -228 185 365 0 0 chr1 156851022 156851074 -85813279 + MIR SINE MIR 48 99 -163 220 398 8 25 chr1 156851340 156851458 -85812895 + L2 LINE L2 3124 3239 -33 333 242 61 20 chr1 156851547 156851646 -85812707 - MARNA DNA Mariner -447 139 37 40 73 0 0 chr1 156852061 156852143 -85812210 + AT_rich Low_complexity Low_complexity 1 82 0 232 288 270 12 chr1 156853029 156853192 -85811161 - L2 LINE L2 0 3272 3068 1487 169 104 28 chr1 156853310 156853636 -85810717 + MLT1A1 LTR MaLR 1 351 -14 24 53 0 0 chr1 156854156 156854194 -85810159 + AT_rich Low_complexity Low_complexity 1 38 0 1448 185 109 29 chr1 156854212 156854303 -85810050 + L1MCa LINE L1 2 84 -6342 2437 87 0 0 chr1 156854303 156854603 -85809750 + AluSc SINE Alu 1 300 -9 1448 185 109 29 chr1 156854603 156854824 -85809529 + L1MCa LINE L1 84 339 -6087 * 13154 143 60 35 chr1 156854807 156857427 -85806926 + L1M4c LINE L1 2 2683 -3699 23 0 0 0 chr1 156857433 156857456 -85806897 + AT_rich Low_complexity Low_complexity 1 23 0 768 219 52 0 chr1 156857456 156857666 -85806687 + L1M4c LINE L1 2664 2884 -3498 760 195 0 12 chr1 156857670 156857839 -85806514 + L1MB3 LINE L1 6017 6183 0 2265 86 3 20 chr1 156857854 156858158 -85806195 + AluSx SINE Alu 14 312 0 7940 137 119 18 chr1 156858170 156859261 -85805092 + L1MCa LINE L1 348 1638 -4788 2303 118 0 0 chr1 156859261 156859565 -85804788 + AluSx SINE Alu 1 304 -8 7940 137 119 18 chr1 156859565 156859997 -85804356 + L1MCa LINE L1 1638 2025 -4401 462 162 7 169 chr1 156860002 156860084 -85804269 + MLT1A1 LTR MaLR 498 545 -81 2125 113 0 4 chr1 156860084 156860359 -85803994 + AluSx SINE Alu 6 279 -33 462 162 7 169 chr1 156860359 156860430 -85803923 + MLT1A1 LTR MaLR 545 626 0 390 293 31 37 chr1 156860808 156860999 -85803354 + L1ME4a LINE L1 5931 6120 -1 2276 91 3 7 chr1 156861537 156861835 -85802518 - AluSx SINE Alu -15 297 1 638 203 65 13 chr1 156861939 156862092 -85802261 + MER5A DNA MER1_type 1 161 -28 340 257 104 55 chr1 156862100 156862245 -85802108 - MARNA DNA Mariner -89 497 361 2107 103 45 3 chr1 156862245 156862536 -85801817 - AluSq SINE Alu -10 303 1 2460 76 0 9 chr1 156862546 156862861 -85801492 - AluSp SINE Alu 0 313 2 340 257 104 55 chr1 156862861 156862906 -85801447 - MARNA DNA Mariner -233 353 286 237 200 0 0 chr1 156863410 156863455 -85800898 + MER5A DNA MER1_type 145 189 0 1576 178 21 14 chr1 156863655 156863942 -85800411 + AluJb SINE Alu 2 290 -22 2275 65 11 0 chr1 156866165 156866442 -85797911 + AluSq SINE Alu 24 303 -10 1145 147 16 0 chr1 156866448 156866632 -85797721 + L1PB2 LINE L1 5965 6151 0 2159 118 0 7 chr1 156867036 156867333 -85797020 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr1 156868320 156868341 -85796012 + AT_rich Low_complexity Low_complexity 1 21 0 775 176 23 0 chr1 156868367 156868498 -85795855 + AluJo SINE Alu 2 135 -177 1568 182 10 26 chr1 156868498 156868806 -85795547 + AluJb SINE Alu 1 303 -9 189 321 109 7 chr1 156869308 156869445 -85794908 - MIR3 SINE MIR -53 155 5 210 259 94 94 chr1 156869643 156869813 -85794540 - L2 LINE L2 -50 3263 3094 211 288 125 0 chr1 156869831 156869911 -85794442 - L2 LINE L2 -310 2962 2873 2192 71 40 37 chr1 156870167 156870463 -85793890 - AluY SINE Alu -14 297 1 316 299 11 0 chr1 156870600 156870687 -85793666 + Charlie1b DNA MER1_type 2 89 -434 23 0 0 0 chr1 156870694 156870717 -85793636 + AT_rich Low_complexity Low_complexity 1 23 0 2244 112 0 0 chr1 156870717 156871011 -85793342 - AluSq SINE Alu -19 294 1 364 221 94 65 chr1 156871111 156871413 -85792940 + LTR37A LTR ERV1 73 426 0 * 1658 174 49 61 chr1 156871413 156871677 -85792676 + Charlie1b DNA MER1_type 104 363 -2398 2321 100 0 0 chr1 156871677 156871967 -85792386 + AluSx SINE Alu 1 290 -22 1658 174 49 61 chr1 156871967 156872127 -85792226 + Charlie1b DNA MER1_type 363 523 0 181 198 221 0 chr1 156872573 156872659 -85791694 + MIR SINE MIR 104 208 -54 420 274 51 23 chr1 156872701 156872876 -85791477 - MIR SINE MIR -50 212 33 2893 118 76 5 chr1 156872947 156873381 -85790972 + MER4C LTR ERV1 1 465 0 2076 117 21 7 chr1 156873400 156873691 -85790662 - AluSx SINE Alu -17 295 1 565 91 91 0 chr1 156873721 156873809 -85790544 + MER4A LTR ERV1 3 98 -566 1611 118 31 61 chr1 156873809 156874130 -85790223 + MER4A LTR ERV1 261 630 -34 2152 112 0 14 chr1 156874195 156874491 -85789862 - AluSx SINE Alu -20 292 1 706 173 62 12 chr1 156874705 156874867 -85789486 + MER53 DNA DNA 4 173 -16 225 205 115 49 chr1 156875281 156875403 -85788950 - L1MC5 LINE L1 -46 7915 7786 330 226 97 11 chr1 156875429 156875522 -85788831 - L1ME2 LINE L1 -13 6151 6051 2333 93 3 0 chr1 156876461 156876761 -85787592 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr1 156878028 156878053 -85786300 + AT_rich Low_complexity Low_complexity 1 25 0 284 274 78 20 chr1 156878303 156878405 -85785948 - MER103 DNA DNA -55 111 4 1842 159 14 3 chr1 156878604 156878900 -85785453 + AluSx SINE Alu 1 299 -13 1090 96 0 0 chr1 156879605 156879741 -85784612 + AluSq/x SINE Alu 1 136 -177 2358 105 0 0 chr1 156879741 156880047 -85784306 + AluY SINE Alu 1 306 -5 559 256 110 66 chr1 156880377 156880766 -85783587 + MLT1J2 LTR MaLR 19 447 -3 497 272 24 8 chr1 156880967 156881092 -85783261 - MIR3 SINE MIR -49 159 33 1694 303 84 20 chr1 156881346 156882155 -85782198 + L2 LINE L2 1858 2718 -596 760 252 183 23 chr1 156882157 156882419 -85781934 + MLT1J LTR MaLR 1 304 -207 22 0 0 0 chr1 156882502 156882524 -85781829 + AT_rich Low_complexity Low_complexity 1 22 0 183 323 16 0 chr1 156882581 156882643 -85781710 + L2 LINE L2 2743 2805 -509 22 35 0 0 chr1 156882725 156882754 -85781599 + AT_rich Low_complexity Low_complexity 1 29 0 366 281 0 11 chr1 156882754 156882843 -85781510 + L2 LINE L2 3182 3269 -3 1760 160 3 42 chr1 156882935 156883241 -85781112 + AluJo SINE Alu 1 294 -18 2023 139 3 0 chr1 156883365 156883653 -85780700 - AluY SINE Alu -22 289 1 1920 148 10 7 chr1 156883938 156884236 -85780117 - AluJb SINE Alu -12 300 2 632 258 183 43 chr1 156884290 156884495 -85779858 + L2 LINE L2 2916 3091 -222 1321 191 128 7 chr1 156884495 156884768 -85779585 - AluJo SINE Alu -4 308 3 632 258 183 43 chr1 156884768 156884911 -85779442 + L2 LINE L2 3091 3313 0 1377 171 0 80 chr1 156885184 156885458 -85778895 - AluJo SINE Alu -60 252 1 792 240 127 40 chr1 156885607 156885978 -85778375 + HAL1 LINE L1 2043 2445 -62 252 184 0 0 chr1 156886326 156886375 -85777978 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 335 241 0 69 chr1 156887296 156887412 -85776941 + MER113 DNA MER1_type? 266 373 -148 316 322 57 17 chr1 156887503 156887680 -85776673 + MIR SINE MIR 9 192 -70 2273 87 3 3 chr1 156889928 156890216 -85774137 - AluSq SINE Alu -17 296 9 2191 90 0 21 chr1 156890402 156890719 -85773634 - AluSp SINE Alu 0 311 1 2227 60 67 7 chr1 156891062 156891346 -85773007 - AluSg SINE Alu -9 301 1 219 36 0 0 chr1 156891628 156891656 -85772697 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1995 100 39 7 chr1 156891659 156891939 -85772414 - AluSx SINE Alu -23 289 1 200 200 44 0 chr1 156892112 156892202 -85772151 + (TA)n Simple_repeat Simple_repeat 1 94 0 226 303 83 18 chr1 156892350 156892459 -85771894 - L2 LINE L2 -4 3268 3153 239 340 109 73 chr1 156892537 156892987 -85771366 - L2 LINE L2 -3 3269 2804 396 0 0 0 chr1 156893660 156893704 -85770649 + (TG)n Simple_repeat Simple_repeat 2 45 0 492 218 84 14 chr1 156893804 156893946 -85770407 - L2 LINE L2 -6 3307 3156 779 239 65 94 chr1 156894002 156894170 -85770183 - L1MC4 LINE L1 -63 7979 7808 2038 147 0 3 chr1 156894170 156894482 -85769871 - AluJb SINE Alu -1 311 1 779 239 65 94 chr1 156894482 156894536 -85769817 - L1MC4 LINE L1 -234 7808 7754 2170 85 27 17 chr1 156894536 156894831 -85769522 + AluSg1 SINE Alu 1 298 -11 779 239 65 94 chr1 156894831 156894958 -85769395 - L1MC4 LINE L1 -288 7754 7639 614 214 0 0 chr1 156894958 156895075 -85769278 - L1MB5 LINE L1 0 6174 6058 239 179 107 0 chr1 156895096 156895152 -85769201 - L2 LINE L2 -561 2753 2692 2123 123 0 3 chr1 156895158 156895451 -85768902 + AluSx SINE Alu 1 292 -20 1528 205 26 16 chr1 156896241 156896548 -85767805 + L1MDa LINE L1 3 312 -6228 2409 91 3 0 chr1 156896828 156897135 -85767218 - AluSx SINE Alu -4 308 1 201 74 0 0 chr1 156897826 156897853 -85766500 + (GA)n Simple_repeat Simple_repeat 2 28 0 2174 89 4 0 chr1 156898036 156898317 -85766036 + AluSp SINE Alu 1 282 -31 292 22 44 0 chr1 156898320 156898365 -85765988 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1884 155 30 0 chr1 156898727 156899030 -85765323 + AluJo SINE Alu 1 312 0 212 217 265 48 chr1 156899828 156899911 -85764442 - L2 LINE L2 -3 3269 3169 370 291 12 0 chr1 156900021 156900107 -85764246 - L2 LINE L2 0 3313 3227 774 178 68 31 chr1 156900618 156900809 -85763544 - MIR SINE MIR 0 262 65 2431 95 0 0 chr1 156901215 156901520 -85762833 + AluSg SINE Alu 1 305 -5 368 326 118 41 chr1 156901812 156902254 -85762099 - L2 LINE L2 -622 2692 2217 861 278 24 20 chr1 156902281 156902536 -85761817 - MIR SINE MIR -6 256 1 286 284 0 0 chr1 156902942 156903009 -85761344 + MIR SINE MIR 75 141 -121 3696 130 31 10 chr1 156903010 156903525 -85760828 - MER1A DNA MER1_type -1 526 1 22 35 0 0 chr1 156904094 156904123 -85760230 + AT_rich Low_complexity Low_complexity 1 29 0 275 306 65 107 chr1 156904427 156904737 -85759616 + L2 LINE L2 2838 3133 -139 2091 135 63 30 chr1 156904737 156905100 -85759253 + THE1C LTR MaLR 1 375 0 275 306 65 107 chr1 156905100 156905145 -85759208 + L2 LINE L2 3133 3178 -94 2429 167 44 9 chr1 156905191 156905621 -85758732 + MLT1C LTR MaLR 23 467 0 188 232 107 0 chr1 156905621 156905677 -85758676 + L2 LINE L2 3252 3313 0 2587 141 70 54 chr1 156906088 156906570 -85757783 + LTR2B LTR ERV1 1 490 0 4879 125 53 54 chr1 156906570 156907913 -85756440 + Harlequin LTR ERV1 1 1349 -5547 * 5525 57 19 1 chr1 156907897 156908652 -85755701 + Harlequin LTR ERV1 1807 2574 -4322 * 7368 54 22 1 chr1 156908640 156909542 -85754811 + Harlequin LTR ERV1 3340 4260 -2636 1773 59 12 35 chr1 156909536 156909790 -85754563 + Harlequin LTR ERV1 1570 1817 -5079 * 18650 107 9 9 chr1 156909778 156912424 -85751929 + Harlequin LTR ERV1 4249 6896 0 2793 143 52 25 chr1 156912424 156912901 -85751452 + LTR2B LTR ERV1 1 490 0 263 290 150 0 chr1 156912973 156913073 -85751280 + MER5B DNA MER1_type 1 115 -63 2109 96 6 51 chr1 156913508 156913821 -85750532 + AluSq SINE Alu 1 299 -14 352 152 127 0 chr1 156914364 156914443 -85749910 - L1ME4a LINE L1 -2 6119 6031 754 80 0 72 chr1 156914907 156915032 -85749321 + L1PA4 LINE L1 6040 6155 0 2387 65 14 0 chr1 156915057 156915348 -85749005 + AluSp SINE Alu 1 295 -18 2455 87 0 0 chr1 156915787 156916086 -85748267 + AluSg SINE Alu 1 299 -11 2461 249 92 33 chr1 156916682 156917047 -85747306 + L1ME3A LINE L1 4978 5320 -850 1972 145 3 0 chr1 156917047 156917353 -85747000 + AluSx SINE Alu 1 307 0 2461 249 92 33 chr1 156917353 156918110 -85746243 + L1ME3A LINE L1 5320 6170 0 616 209 44 97 chr1 156918552 156918666 -85745687 - MIR SINE MIR 0 262 143 2342 74 0 10 chr1 156918666 156918964 -85745389 + AluY SINE Alu 1 295 -16 2358 103 0 0 chr1 156918972 156919273 -85745080 + AluSq SINE Alu 1 301 -12 616 209 44 97 chr1 156919273 156919355 -85744998 - MIR SINE MIR -126 136 68 206 260 123 0 chr1 156919537 156919610 -85744743 + L2 LINE L2 3124 3205 -67 321 242 226 60 chr1 156919697 156920100 -85744253 + MLT1H LTR MaLR 3 513 -36 504 328 78 0 chr1 156920131 156920323 -85744030 + MIR SINE MIR 56 262 0 290 294 11 11 chr1 156920324 156920416 -85743937 - L2 LINE L2 0 3272 3181 246 315 222 0 chr1 156920514 156920622 -85743731 - L2 LINE L2 0 3272 3141 338 305 125 8 chr1 156920871 156920999 -85743354 - L2 LINE L2 -452 2862 2720 773 265 16 36 chr1 156922104 156922353 -85742000 + MIR SINE MIR 9 252 -10 379 319 13 6 chr1 156922462 156922619 -85741734 - L1MC5 LINE L1 -81 7880 7723 240 330 117 22 chr1 156923928 156924107 -85740246 + MIR SINE MIR 2 197 -65 508 317 50 0 chr1 156924600 156924780 -85739573 - MIR SINE MIR 0 262 74 212 306 71 0 chr1 156924974 156925059 -85739294 + L2 LINE L2 3182 3272 0 2445 98 0 0 chr1 156925200 156925505 -85738848 + AluSx SINE Alu 1 305 -7 817 202 36 97 chr1 156925732 156925980 -85738373 + MIR SINE MIR 8 240 -22 2260 106 0 0 chr1 156926034 156926335 -85738018 - AluSx SINE Alu -11 301 1 22 0 0 0 chr1 156926936 156926958 -85737395 + AT_rich Low_complexity Low_complexity 1 22 0 8870 153 44 26 chr1 156926958 156927143 -85737210 - L1MA3 LINE L1 0 7724 7544 2160 106 169 5 chr1 156927143 156927511 -85736842 - MSTA LTR MaLR 0 428 1 8870 153 44 26 chr1 156927511 156927692 -85736661 - L1MA3 LINE L1 -180 7544 7368 2483 83 0 0 chr1 156927692 156927993 -85736360 - AluSg SINE Alu -9 301 1 8870 153 44 26 chr1 156927993 156928622 -85735731 - L1MA3 LINE L1 -356 7368 6752 2196 90 7 3 chr1 156928622 156928911 -85735442 - AluSg SINE Alu -20 290 1 8870 153 44 26 chr1 156928911 156928979 -85735374 - L1MA3 LINE L1 -972 6752 6687 7454 55 1 3 chr1 156928979 156930707 -85733646 + L1PA5 LINE L1 4426 6154 0 8870 153 44 26 chr1 156930707 156931592 -85732761 - L1MA3 LINE L1 -1037 6687 5819 2479 58 0 0 chr1 156931592 156931903 -85732450 + AluY SINE Alu 1 311 0 8870 153 44 26 chr1 156931903 156932959 -85731394 - L1MA3 LINE L1 -1905 5819 4644 4935 113 37 4 chr1 156932942 156933691 -85730662 - L1MA3 LINE L1 -5306 2259 1486 * 372 249 35 0 chr1 156933823 156933939 -85730414 - MIR SINE MIR -62 146 30 2356 78 0 0 chr1 156933942 156934257 -85730096 - AluSg SINE Alu 0 315 1 2555 62 0 0 chr1 156934372 156934677 -85729676 + AluY SINE Alu 1 305 -6 1979 136 7 0 chr1 156934961 156935256 -85729097 - AluJb SINE Alu -2 310 14 445 250 165 25 chr1 156935852 156936052 -85728301 + MIR SINE MIR 35 262 0 280 283 76 0 chr1 156936313 156936405 -85727948 - MER94 DNA DNA -32 102 4 1955 132 62 3 chr1 156936428 156936717 -85727636 + AluSx SINE Alu 1 306 -6 502 325 15 25 chr1 156937301 156937501 -85726852 + MIR3 SINE MIR 7 204 -4 538 271 111 38 chr1 156937636 156937898 -85726455 + MER21B LTR ERV1 434 714 -149 2355 81 3 0 chr1 156937900 156938195 -85726158 + AluSc SINE Alu 1 296 -13 252 304 44 59 chr1 156938523 156938658 -85725695 - L2 LINE L2 -935 2379 2247 350 219 0 0 chr1 156938721 156938794 -85725559 - MER96 DNA MER1_type? -93 82 10 516 333 95 16 chr1 156938811 156939126 -85725227 - L2 LINE L2 -1117 2197 1858 358 226 15 68 chr1 156940084 156940217 -85724136 + L1MC4a LINE L1 7300 7425 -383 1647 168 0 39 chr1 156940217 156940502 -85723851 + AluSx SINE Alu 17 290 -22 204 40 0 0 chr1 156940502 156940527 -85723826 + (TA)n Simple_repeat Simple_repeat 1 25 0 1104 217 11 47 chr1 156940569 156940711 -85723642 + L1MD3 LINE L1 7417 7563 -419 2540 32 0 10 chr1 156940711 156941023 -85723330 + AluYa5 SINE Alu 1 309 -2 1104 217 11 47 chr1 156941023 156941282 -85723071 + L1MD3 LINE L1 7563 7982 0 2170 97 0 4 chr1 156941316 156941595 -85722758 + AluSg1 SINE Alu 1 278 -31 2430 72 3 0 chr1 156943537 156943829 -85720524 - AluSq SINE Alu -20 293 1 212 264 69 14 chr1 156944007 156944079 -85720274 + MIR SINE MIR 100 175 -87 246 337 23 0 chr1 156945173 156945275 -85719078 + MIR3 SINE MIR 75 179 -29 2164 104 7 16 chr1 156945970 156946278 -85718075 + AluSx SINE Alu 1 305 -7 2221 115 0 0 chr1 156946279 156946583 -85717770 + AluSx SINE Alu 1 304 -8 2294 103 0 0 chr1 156947080 156947381 -85716972 - AluSg SINE Alu -7 303 3 216 0 0 0 chr1 156948736 156948760 -85715593 + (TG)n Simple_repeat Simple_repeat 1 24 0 1750 186 10 13 chr1 156949504 156949816 -85714537 + AluJb SINE Alu 2 312 0 202 367 94 33 chr1 156950092 156950272 -85714081 + L3 LINE CR1 47 237 -1340 1128 264 89 34 chr1 156950272 156950655 -85713698 - MLT1I LTR MaLR 0 409 6 557 311 246 15 chr1 156950689 156950966 -85713387 + L3 LINE CR1 331 543 -1034 3916 126 50 20 chr1 156950966 156951704 -85712649 + L1MA9 LINE L1 5552 6311 -1 557 311 246 15 chr1 156951704 156951882 -85712471 + L3 LINE CR1 543 891 -686 2573 196 74 32 chr1 156951906 156952443 -85711910 - L1ME3A LINE L1 -9 6161 5587 1569 105 18 9 chr1 156952443 156952671 -85711682 - MER30 DNA MER1_type 0 230 1 2573 196 74 32 chr1 156952671 156952822 -85711531 - L1ME3A LINE L1 -583 5587 5444 1000 217 6 33 chr1 156952826 156953183 -85711170 + LTR2 LTR ERV1 3 449 0 208 320 70 0 chr1 156953352 156953452 -85710901 + L3 LINE CR1 1175 1281 -296 433 175 72 0 chr1 156953852 156953949 -85710404 + MER53 DNA DNA 2 105 -84 304 311 57 0 chr1 156954050 156954156 -85710197 + L3 LINE CR1 1276 1387 -190 4470 54 35 0 chr1 156954206 156954777 -85709576 + LTR10C LTR ERV1 1 591 0 398 277 225 19 chr1 156955134 156955173 -85709180 - MIR SINE MIR -5 257 227 4422 100 30 5 chr1 156955173 156955801 -85708552 + LTR9B LTR ERV1 1 644 0 398 277 225 19 chr1 156955801 156955974 -85708379 - MIR SINE MIR -35 227 1 1914 127 0 0 chr1 156958480 156958748 -85705605 - AluSq SINE Alu -45 268 1 570 258 129 26 chr1 156958764 156958958 -85705395 - MIR SINE MIR -12 250 37 2245 87 0 3 chr1 156959215 156959504 -85704849 - AluSq SINE Alu -25 288 1 257 196 0 20 chr1 156960236 156960287 -85704066 - L2 LINE L2 -13 3259 3210 271 226 0 131 chr1 156960291 156960315 -85704038 - MIR SINE MIR -160 102 76 2195 113 7 0 chr1 156960315 156960616 -85703737 + AluJb SINE Alu 1 303 -9 271 226 0 131 chr1 156960616 156960675 -85703678 - MIR SINE MIR -186 76 30 215 232 159 0 chr1 156960715 156960784 -85703569 - MIR SINE MIR -17 245 166 2460 67 0 0 chr1 156961592 156961890 -85702463 - AluY SINE Alu -13 298 1 21 0 0 0 chr1 156961940 156961961 -85702392 + AT_rich Low_complexity Low_complexity 1 21 0 361 25 12 0 chr1 156962864 156962919 -85701434 + AluY SINE Alu 249 296 -6 450 79 26 0 chr1 156964091 156964167 -85700186 - L1PA16 LINE L1 -20 6146 6069 2217 103 10 0 chr1 156964228 156964519 -85699834 - AluSx SINE Alu -18 294 1 22 35 0 0 chr1 156964705 156964734 -85699619 + AT_rich Low_complexity Low_complexity 1 29 0 246 274 94 19 chr1 156965649 156965755 -85698598 - MIR SINE MIR -108 154 41 3692 164 66 32 chr1 156965831 156966705 -85697648 + L1MB3 LINE L1 5280 6183 0 702 209 111 23 chr1 156966720 156966892 -85697461 - MER5A DNA MER1_type 0 189 3 243 282 90 54 chr1 156967002 156967136 -85697217 + MIR3 SINE MIR 15 151 -70 413 186 10 62 chr1 156967719 156967816 -85696537 + Tigger2 DNA MER2_type 1 92 -2626 362 275 11 0 chr1 156968393 156968484 -85695869 + L1MC4 LINE L1 6612 6703 -1339 307 130 0 0 chr1 156968456 156968502 -85695851 - L1MC4 LINE L1 -1339 6703 6658 * 2487 83 0 6 chr1 156968532 156968844 -85695509 - AluSg SINE Alu 0 310 1 455 167 258 0 chr1 156969542 156969608 -85694745 + MER20 DNA MER1_type 1 49 -170 246 81 0 0 chr1 156969608 156969645 -85694708 + (CTG)n Simple_repeat Simple_repeat 3 39 0 455 167 258 0 chr1 156969645 156969710 -85694643 + MER20 DNA MER1_type 49 166 -53 193 239 174 11 chr1 156969802 156969894 -85694459 + L2 LINE L2 2941 3047 -225 2143 51 0 0 chr1 156971064 156971317 -85693036 + AluY SINE Alu 1 253 -58 2302 86 3 3 chr1 156972074 156972375 -85691978 + AluSp SINE Alu 1 301 -12 489 273 87 17 chr1 156973567 156973739 -85690614 - MIR3 SINE MIR -9 199 16 2072 95 0 15 chr1 156973956 156974229 -85690124 - AluSx SINE Alu -43 269 1 450 282 51 0 chr1 156974239 156974356 -85689997 + L2 LINE L2 3175 3297 -16 30 83 0 0 chr1 156974469 156974541 -85689812 + AT_rich Low_complexity Low_complexity 1 72 0 376 224 41 41 chr1 156975184 156975354 -85688999 - Charlie7 DNA MER1_type -2 2610 2441 326 278 10 10 chr1 156975348 156975445 -85688908 - Charlie7 DNA MER1_type -2507 105 9 * 2376 103 0 0 chr1 156975524 156975835 -85688518 + AluSx SINE Alu 1 311 -1 2254 104 7 0 chr1 156976167 156976464 -85687889 - AluSx SINE Alu -13 299 1 520 278 147 2 chr1 156976858 156977066 -85687287 - MIR SINE MIR -6 256 16 183 182 182 0 chr1 156978073 156978128 -85686225 - MIR SINE MIR -164 98 34 667 115 187 14 chr1 156982267 156982406 -85681947 - L1MA9 LINE L1 -5 6307 6145 206 121 0 0 chr1 156982413 156982446 -85681907 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2072 101 4 4 chr1 156982478 156982756 -85681597 + AluSx SINE Alu 1 278 -34 225 0 0 0 chr1 156982760 156982785 -85681568 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 600 146 0 9 chr1 156983391 156983501 -85680852 - AluJb SINE Alu -29 283 175 22 35 0 0 chr1 156983502 156983531 -85680822 + AT_rich Low_complexity Low_complexity 1 29 0 226 291 191 9 chr1 156984435 156984655 -85679698 + MER112 DNA MER1_type 1 260 0 22 0 0 0 chr1 156984729 156984751 -85679602 + AT_rich Low_complexity Low_complexity 1 22 0 1245 210 159 33 chr1 156984830 156985061 -85679292 - L1ME LINE L1 -508 5656 5455 2106 120 7 0 chr1 156985061 156985361 -85678992 - AluSp SINE Alu -11 302 1 1245 210 159 33 chr1 156985361 156985914 -85678439 - L1ME LINE L1 -709 5455 4973 2404 55 0 10 chr1 156985914 156986206 -85678147 - AluY SINE Alu -22 289 1 1245 210 159 33 chr1 156986206 156986502 -85677851 - L1ME LINE L1 -1191 4973 4382 438 204 9 0 chr1 156986505 156986618 -85677735 - L1MA4A LINE L1 -2 7003 6890 12764 171 48 23 chr1 156986629 156986844 -85677509 - L1MA4A LINE L1 -260 6745 6537 2230 92 0 14 chr1 156986844 156987139 -85677214 - AluY SINE Alu -20 291 1 12764 171 48 23 chr1 156987139 156988453 -85675900 - L1MA4A LINE L1 -468 6537 5257 186 43 0 0 chr1 156988453 156988476 -85675877 + (TG)n Simple_repeat Simple_repeat 2 24 0 2294 89 0 35 chr1 156988482 156988797 -85675556 - AluSc SINE Alu -5 304 1 12764 171 48 23 chr1 156988797 156988953 -85675400 - L1MA4A LINE L1 -1752 5253 5102 2374 94 3 0 chr1 156988953 156989252 -85675101 - AluSx SINE Alu -11 301 2 12764 171 48 23 chr1 156989252 156991138 -85673215 - L1MA4A LINE L1 -1903 5102 3078 647 195 19 26 chr1 156991156 156991310 -85673043 - L1MA4A LINE L1 -4489 2360 2208 281 238 16 0 chr1 156991317 156991380 -85672973 - L1MCc LINE L1 -6188 235 172 2253 117 0 0 chr1 156991648 156991946 -85672407 - AluSx SINE Alu -13 299 2 421 277 89 0 chr1 156992015 156992127 -85672226 - L2 LINE L2 0 3313 3192 1551 251 58 65 chr1 156992241 156992762 -85671591 + LTR40a LTR ERVL 3 519 0 452 251 164 43 chr1 156993986 156994217 -85670136 + L2 LINE L2 3055 3313 0 346 280 187 65 chr1 156994229 156994288 -85670065 - MIR SINE MIR -20 242 192 2170 129 0 0 chr1 156994288 156994591 -85669762 + AluSx SINE Alu 1 303 -9 346 280 187 65 chr1 156994591 156994745 -85669608 - MIR SINE MIR -70 192 3 23 0 0 0 chr1 156994981 156995004 -85669349 + AT_rich Low_complexity Low_complexity 1 23 0 790 274 157 41 chr1 156995066 156995184 -85669169 + L2 LINE L2 1850 1953 -1361 2167 77 9 59 chr1 156995184 156995508 -85668845 - AluY SINE Alu 0 311 4 790 274 157 41 chr1 156995508 156995849 -85668504 + L2 LINE L2 1953 2362 -952 453 344 73 35 chr1 156996153 156996441 -85667912 + L2 LINE L2 2886 3184 -129 1993 126 7 0 chr1 156996608 156996894 -85667459 - AluSx SINE Alu -24 288 1 313 280 0 21 chr1 156996903 156996996 -85667357 - HAL1 LINE L1 -856 1651 1561 1917 120 50 0 chr1 156997001 156997284 -85667069 - AluSx SINE Alu -11 301 5 2500 71 0 0 chr1 156997436 156997746 -85666607 - AluY SINE Alu 0 311 2 481 211 95 20 chr1 156997757 156997796 -85666557 - L1MA10 LINE L1 -2 6332 6294 2361 233 41 35 chr1 156997796 156998503 -85665850 - L1ME1 LINE L1 -44 6191 5481 1154 254 34 27 chr1 156998510 156998775 -85665578 - L1ME1 LINE L1 -1822 4393 4122 1663 157 7 25 chr1 156998775 156999061 -85665292 - AluJo SINE Alu -31 281 1 1154 254 34 27 chr1 156999061 156999205 -85665148 - L1ME1 LINE L1 -2093 4122 3981 * 2284 234 46 19 chr1 156999201 157000034 -85664319 - L1ME1 LINE L1 -2629 3586 2732 227 204 19 0 chr1 157000013 157000067 -85664286 - L1ME1 LINE L1 -6278 118 64 * 4064 175 36 47 chr1 157000108 157001556 -85662797 - L1MB7 LINE L1 -19 6165 4735 5493 170 55 34 chr1 157001720 157003280 -85661073 - L1MC1 LINE L1 -17 6596 5015 1701 117 8 26 chr1 157003286 157003577 -85660776 - AluSg SINE Alu 0 306 21 674 213 18 6 chr1 157003617 157003781 -85660572 - L1MC1 LINE L1 -3295 3131 2966 2175 235 22 25 chr1 157003781 157004227 -85660126 - L1MB7 LINE L1 -1435 4711 4265 2285 72 4 0 chr1 157004227 157004536 -85659817 - AluY SINE Alu 0 310 1 2175 235 22 25 chr1 157004536 157004734 -85659619 - L1MB7 LINE L1 -1881 4265 4068 361 243 39 39 chr1 157004735 157004838 -85659515 - MER46A DNA MER2_type -90 146 44 542 165 12 0 chr1 157004737 157004822 -85659531 + Tigger4(Zombi) DNA MER2_type 1 86 -2645 2656 254 28 11 chr1 157004841 157005661 -85658692 - L1MB7 LINE L1 -3135 3011 2178 * 7930 165 34 49 chr1 157005639 157005669 -85658684 - L1MC1 LINE L1 -3947 2479 2450 2095 120 7 3 chr1 157005669 157005970 -85658383 + AluSx SINE Alu 1 302 -10 2183 95 3 14 chr1 157005974 157006269 -85658084 + AluSq SINE Alu 2 293 -20 7930 165 34 49 chr1 157006269 157006421 -85657932 - L1MC1 LINE L1 -3979 2447 2294 2070 110 40 10 chr1 157006421 157006722 -85657631 - AluSx SINE Alu 0 312 3 7930 165 34 49 chr1 157006722 157008627 -85655726 - L1MC1 LINE L1 -4132 2294 335 2129 102 3 26 chr1 157008627 157008930 -85655423 - AluSx SINE Alu -16 296 1 7930 165 34 49 chr1 157008930 157009260 -85655093 - L1MC1 LINE L1 -6091 335 2 1591 86 36 0 chr1 157009277 157009498 -85654855 - MER30 DNA MER1_type 0 230 2 2232 111 0 25 chr1 157010710 157011026 -85653327 - AluSx SINE Alu -4 308 1 1791 260 80 64 chr1 157011143 157011898 -85652455 - LTR41 LTR ERVL -6 767 1 21 0 0 0 chr1 157011989 157012010 -85652343 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 157012136 157012157 -85652196 + AT_rich Low_complexity Low_complexity 1 21 0 2086 144 0 3 chr1 157012760 157013073 -85651280 - AluSx SINE Alu 0 312 1 1313 147 24 5 chr1 157013365 157013576 -85650777 + AluJo SINE Alu 1 215 -97 22 0 0 0 chr1 157013864 157013886 -85650467 + AT_rich Low_complexity Low_complexity 1 22 0 2175 109 0 3 chr1 157014858 157015152 -85649201 - AluSx SINE Alu -19 293 1 943 278 138 18 chr1 157015362 157015798 -85648555 - L2 LINE L2 -458 2856 2369 1054 253 223 8 chr1 157016158 157016755 -85647598 - L1MC4 LINE L1 -451 7591 6867 * 1707 237 93 8 chr1 157016736 157017209 -85647144 - L1MC4 LINE L1 -1976 5832 5320 252 304 9 27 chr1 157018023 157018135 -85646218 + (TATG)n Simple_repeat Simple_repeat 3 112 0 649 343 107 13 chr1 157018147 157018541 -85645812 + L3 LINE CR1 429 859 -718 1481 208 7 24 chr1 157018546 157018839 -85645514 - AluJo SINE Alu -15 297 10 278 281 67 6 chr1 157018928 157019106 -85645247 - L1MEc LINE L1 -3846 2369 2181 2078 137 0 10 chr1 157019182 157019489 -85644864 + AluSx SINE Alu 1 304 -8 2305 93 10 10 chr1 157019886 157020197 -85644156 - AluSp SINE Alu 0 313 3 223 125 50 0 chr1 157020256 157020296 -85644057 + CT-rich Low_complexity Low_complexity 3 44 0 326 273 78 62 chr1 157020298 157020738 -85643615 - L1MEc LINE L1 -899 1677 1280 1771 219 110 65 chr1 157020776 157021665 -85642688 - L1ME3A LINE L1 -6 6156 5181 1372 156 97 4 chr1 157021692 157021930 -85642423 - AluJo SINE Alu -30 282 23 470 284 89 13 chr1 157021936 157022172 -85642181 - L1ME3A LINE L1 -960 5186 4933 3731 177 72 41 chr1 157022319 157022600 -85641753 - L1MB2 LINE L1 -112 6059 5788 2031 139 0 0 chr1 157022600 157022894 -85641459 + AluSx SINE Alu 1 294 -18 2220 100 0 0 chr1 157022896 157023209 -85641144 + AluSc SINE Alu 1 313 0 3731 177 72 41 chr1 157023209 157023907 -85640446 - L1MB2 LINE L1 -383 5788 5049 2039 95 44 3 chr1 157023907 157024201 -85640152 - AluSx SINE Alu -6 306 1 3731 177 72 41 chr1 157024201 157024347 -85640006 - L1MB2 LINE L1 -1122 5049 4909 5678 154 10 8 chr1 157024366 157025234 -85639119 - L1PA16 LINE L1 -2 6164 5289 1994 119 0 14 chr1 157025234 157025520 -85638833 - AluSc SINE Alu -11 298 17 5678 154 10 8 chr1 157025520 157026299 -85638054 - L1PA16 LINE L1 -877 5289 4513 3361 242 64 17 chr1 157026312 157027237 -85637116 - L1M4 LINE L1 -5559 983 16 24 0 0 0 chr1 157027377 157027401 -85636952 + AT_rich Low_complexity Low_complexity 1 24 0 1929 161 58 14 chr1 157027832 157028180 -85636173 - THE1B LTR MaLR 0 364 2 442 46 31 0 chr1 157028180 157028245 -85636108 + (TG)n Simple_repeat Simple_repeat 1 67 0 2047 201 60 44 chr1 157028248 157028701 -85635652 - MLT1D LTR MaLR -45 460 1 2110 252 101 11 chr1 157028737 157029458 -85634895 - L1ME3A LINE L1 -4 6166 5381 1526 172 64 7 chr1 157029511 157029794 -85634559 - MER1B DNA MER1_type -20 319 22 416 164 77 19 chr1 157029917 157030021 -85634332 - L1MB4 LINE L1 -1 6179 6070 23 78 0 0 chr1 157030828 157030879 -85633474 + AT_rich Low_complexity Low_complexity 1 51 0 1666 166 0 24 chr1 157031165 157031455 -85632898 - AluJo SINE Alu -22 290 8 2089 96 0 4 chr1 157031794 157032098 -85632255 + AluSg SINE Alu 1 303 0 2003 84 80 0 chr1 157032596 157032871 -85631482 + AluSx SINE Alu 1 297 -15 1119 186 24 19 chr1 157033163 157033373 -85630980 + AluJo SINE Alu 87 297 -15 21 0 0 0 chr1 157034128 157034149 -85630204 + AT_rich Low_complexity Low_complexity 1 21 0 1426 163 120 104 chr1 157034544 157034986 -85629367 - MLT1C LTR MaLR 0 467 19 291 28 0 0 chr1 157035248 157035284 -85629069 + (CA)n Simple_repeat Simple_repeat 2 37 0 284 256 16 64 chr1 157035549 157035674 -85628679 - MER20 DNA MER1_type -4 215 97 23 68 0 0 chr1 157036158 157036202 -85628151 + AT_rich Low_complexity Low_complexity 1 44 0 2230 87 3 0 chr1 157036463 157036781 -85627572 + AluSp SINE Alu 1 319 0 26 0 0 0 chr1 157037208 157037234 -85627119 + AT_rich Low_complexity Low_complexity 1 26 0 2304 97 3 0 chr1 157038393 157038692 -85625661 + AluSq SINE Alu 1 300 -13 387 301 24 57 chr1 157038817 157039026 -85625327 - L2 LINE L2 -5 3308 3107 390 256 32 0 chr1 157039169 157039294 -85625059 + CT-rich Low_complexity Low_complexity 4 132 0 1129 272 102 43 chr1 157039383 157040128 -85624225 + L2 LINE L2 2530 3308 -5 1440 171 10 53 chr1 157040645 157041034 -85623319 + L1MB7 LINE L1 5152 5530 -654 15123 122 27 20 chr1 157041080 157043474 -85620879 - Tigger1 DNA MER2_type 0 2418 7 2357 167 71 8 chr1 157043506 157043997 -85620356 + L1MB7 LINE L1 5645 6166 -18 1334 210 32 0 chr1 157044017 157044298 -85620055 + AluJo SINE Alu 4 293 -19 442 300 125 61 chr1 157044423 157045030 -85619323 - L2 LINE L2 -1381 1933 1288 22 0 0 0 chr1 157045607 157045629 -85618724 + AT_rich Low_complexity Low_complexity 1 22 0 879 272 59 24 chr1 157045630 157045920 -85618433 - L1MC/D LINE L1 -2075 5733 5434 21 57 0 0 chr1 157046034 157046069 -85618284 + AT_rich Low_complexity Low_complexity 1 35 0 2022 304 144 51 chr1 157049940 157050958 -85613395 + L2 LINE L2 1218 2421 -893 2150 114 13 0 chr1 157050958 157051264 -85613089 - AluSx SINE Alu -2 310 1 2022 304 144 51 chr1 157051264 157051747 -85612606 + L2 LINE L2 2421 2858 -456 260 135 0 19 chr1 157051821 157051873 -85612480 + (CCCTG)n Simple_repeat Simple_repeat 3 53 0 231 114 0 0 chr1 157051878 157051913 -85612440 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 781 162 14 28 chr1 157051924 157051991 -85612362 + CT-rich Low_complexity Low_complexity 1 67 -511 2325 86 0 0 chr1 157051991 157052293 -85612060 - AluY SINE Alu -9 302 1 781 162 14 28 chr1 157052293 157052511 -85611842 + CT-rich Low_complexity Low_complexity 67 578 0 218 186 0 58 chr1 157052527 157052613 -85611740 + CT-rich Low_complexity Low_complexity 3 83 0 22 0 0 0 chr1 157052820 157052842 -85611511 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr1 157053717 157053750 -85610603 + AT_rich Low_complexity Low_complexity 1 33 0 2281 86 7 10 chr1 157054107 157054411 -85609942 - AluSc SINE Alu -6 303 1 1932 130 18 0 chr1 157054693 157054996 -85609357 + AluSx SINE Alu 3 310 0 1863 275 161 56 chr1 157056456 157056765 -85607588 + L2 LINE L2 1427 1702 -1612 1597 158 30 4 chr1 157056765 157057030 -85607323 - AluJb SINE Alu -36 276 5 1863 275 161 56 chr1 157057030 157057726 -85606627 + L2 LINE L2 1702 2538 -776 1015 282 25 65 chr1 157057739 157058140 -85606213 + L2 LINE L2 2917 3301 -12 24 32 0 0 chr1 157060324 157060355 -85603998 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr1 157061612 157061649 -85602704 + AT_rich Low_complexity Low_complexity 1 37 0 299 264 92 11 chr1 157061824 157061911 -85602442 + MIR SINE MIR 35 128 -134 2129 130 0 0 chr1 157062043 157062343 -85602010 - AluY SINE Alu -11 300 1 897 272 40 8 chr1 157063112 157063362 -85600991 - MIR SINE MIR 0 262 5 1942 138 0 19 chr1 157066928 157067246 -85597107 + AluJo SINE Alu 1 312 0 2251 100 7 0 chr1 157067519 157067818 -85596535 + AluSx SINE Alu 1 301 -11 323 294 90 52 chr1 157068233 157068444 -85595909 - L2 LINE L2 -819 2495 2277 856 338 69 6 chr1 157068668 157069126 -85595227 + L2 LINE L2 2590 3083 -189 1132 312 114 40 chr1 157069338 157070217 -85594136 - L2 LINE L2 -567 2747 1804 24 0 0 0 chr1 157070695 157070719 -85593634 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 157071271 157071292 -85593061 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr1 157071792 157071842 -85592511 + AT_rich Low_complexity Low_complexity 1 50 0 377 269 198 0 chr1 157072198 157072365 -85591988 - MIR SINE MIR 0 262 63 222 329 12 12 chr1 157072383 157072468 -85591885 - L2 LINE L2 -1 3312 3228 986 221 4 53 chr1 157072544 157072694 -85591659 - MIR SINE MIR -23 239 104 2373 89 0 0 chr1 157072694 157072998 -85591355 + AluY SINE Alu 1 304 -7 986 221 4 53 chr1 157072998 157073091 -85591262 - MIR SINE MIR -158 104 8 248 291 142 79 chr1 157073162 157073675 -85590678 - L2 LINE L2 -162 3110 2463 891 321 58 46 chr1 157073937 157074528 -85589825 - L2 LINE L2 -905 2409 1812 2799 13 0 6 chr1 157076300 157076612 -85587741 - AluYb8 SINE Alu -8 310 1 1572 188 22 0 chr1 157077231 157077503 -85586850 + AluJo SINE Alu 4 281 -31 231 281 103 27 chr1 157077551 157077697 -85586656 + MIR SINE MIR 104 260 -2 28 48 0 0 chr1 157077891 157077933 -85586420 + AT_rich Low_complexity Low_complexity 1 42 0 1899 171 0 3 chr1 157078159 157078463 -85585890 + AluJb SINE Alu 1 303 -9 2201 116 6 0 chr1 157078776 157079087 -85585266 + AluSq SINE Alu 1 313 0 404 181 138 0 chr1 157080100 157080194 -85584159 - FLAM_C SINE Alu 0 133 27 813 211 70 6 chr1 157081591 157081747 -85582606 - MER5A DNA MER1_type -3 186 21 21 0 0 0 chr1 157081781 157081802 -85582551 + AT_rich Low_complexity Low_complexity 1 21 0 474 298 62 21 chr1 157081815 157082188 -85582165 - L1ME4a LINE L1 -123 5998 5611 26 88 0 0 chr1 157082279 157082347 -85582006 + AT_rich Low_complexity Low_complexity 1 68 0 218 221 23 52 chr1 157082583 157082804 -85581549 + (TATAA)n Simple_repeat Simple_repeat 1 214 0 1310 243 224 37 chr1 157082887 157083543 -85580810 - L2 LINE L2 -15 3298 2508 463 279 22 7 chr1 157084032 157084168 -85580185 + MIR SINE MIR 94 231 -31 270 219 50 57 chr1 157084190 157084401 -85579952 - L1P LINE L1 -770 5386 5176 326 326 122 41 chr1 157084404 157084747 -85579606 - L1ME4a LINE L1 -1024 5122 4752 360 0 0 0 chr1 157084890 157084930 -85579423 + (CA)n Simple_repeat Simple_repeat 1 40 0 279 270 0 0 chr1 157086616 157086679 -85577674 + L2 LINE L2 3210 3272 0 1195 181 5 5 chr1 157087351 157087561 -85576792 - MER2 DNA MER2_type -135 210 1 379 286 91 35 chr1 157089106 157089305 -85575048 + MIR SINE MIR 49 258 -4 29 0 0 0 chr1 157090454 157090483 -85573870 + AT_rich Low_complexity Low_complexity 1 29 0 180 176 0 0 chr1 157090688 157090722 -85573631 + (TA)n Simple_repeat Simple_repeat 1 34 0 476 212 66 47 chr1 157091693 157091906 -85572447 - MER58 DNA MER1_type 0 2420 1 1722 142 37 27 chr1 157092239 157092406 -85571947 - AluJo SINE Alu -13 299 126 207 0 0 0 chr1 157092406 157092429 -85571924 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1722 142 37 27 chr1 157092429 157092557 -85571796 - AluJo SINE Alu -186 126 1 2538 65 0 0 chr1 157092642 157092948 -85571405 - AluY SINE Alu -3 308 3 21 0 0 0 chr1 157092952 157092973 -85571380 + AT_rich Low_complexity Low_complexity 1 21 0 1920 156 0 10 chr1 157094871 157095179 -85569174 - AluSx SINE Alu -7 305 1 983 238 82 56 chr1 157096434 157096943 -85567410 - MER68 LTR ERV1 0 562 20 2210 144 100 3 chr1 157097149 157097539 -85566814 - MSTC LTR MaLR 0 428 1 24 32 0 0 chr1 157097647 157097678 -85566675 + AT_rich Low_complexity Low_complexity 1 31 0 1468 93 0 5 chr1 157097815 157098009 -85566344 - AluSg/x SINE Alu -15 295 103 261 0 0 0 chr1 157098327 157098356 -85565997 + (T)n Simple_repeat Simple_repeat 1 29 0 563 199 26 13 chr1 157099608 157099759 -85564594 - MER103 DNA DNA -7 159 7 184 266 188 32 chr1 157099914 157100068 -85564285 - L3b LINE CR1 -192 1391 1214 429 311 88 47 chr1 157100590 157100783 -85563570 - L2 LINE L2 -31 3241 3041 881 275 124 26 chr1 157101031 157101561 -85562792 - L1ME3A LINE L1 -221 5949 5472 2095 108 11 4 chr1 157101561 157101863 -85562490 - AluSx SINE Alu 0 306 3 881 275 124 26 chr1 157101863 157102641 -85561712 - L1ME3A LINE L1 -698 5472 4461 1868 169 0 7 chr1 157102641 157102943 -85561410 - AluJo SINE Alu -12 300 1 881 275 124 26 chr1 157102943 157103126 -85561227 - L1ME3A LINE L1 -1709 4461 4297 1521 170 4 22 chr1 157103205 157103481 -85560872 - AluJo SINE Alu -41 271 1 1957 121 11 0 chr1 157103605 157103869 -85560484 + AluSx SINE Alu 1 267 -45 571 207 78 33 chr1 157104488 157104730 -85559623 - L1ME1 LINE L1 -296 5870 5613 2312 224 42 34 chr1 157104766 157105409 -85558944 + L1ME3A LINE L1 5518 6165 -5 24 0 0 0 chr1 157105664 157105688 -85558665 + AT_rich Low_complexity Low_complexity 1 24 0 1680 60 0 0 chr1 157105906 157106106 -85558247 - AluY SINE Alu -11 300 101 25 31 0 0 chr1 157106571 157106603 -85557750 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr1 157107075 157107095 -85557258 + (T)n Simple_repeat Simple_repeat 1 20 0 398 318 37 0 chr1 157108121 157108228 -85556125 - L2 LINE L2 0 3313 3203 892 132 0 0 chr1 157108313 157108442 -85555911 - FLAM_C SINE Alu -3 130 2 23 0 0 0 chr1 157108555 157108578 -85555775 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 157109345 157109368 -85554985 + AT_rich Low_complexity Low_complexity 1 23 0 201 337 123 93 chr1 157110220 157110585 -85553768 - L2 LINE L2 -1 3271 2896 213 304 0 25 chr1 157110723 157110802 -85553551 + CT-rich Low_complexity Low_complexity 2 78 0 25 31 0 0 chr1 157111488 157111520 -85552833 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 157111537 157111558 -85552795 + AT_rich Low_complexity Low_complexity 1 21 0 244 213 13 93 chr1 157112155 157112230 -85552123 - MIR SINE MIR -146 116 48 374 332 46 25 chr1 157112262 157112458 -85551895 + L2 LINE L2 2757 2956 -358 335 306 8 52 chr1 157113542 157113676 -85550677 - MER5B DNA MER1_type -26 152 25 260 313 20 10 chr1 157113816 157113915 -85550438 + L2 LINE L2 2716 2815 -499 379 134 61 49 chr1 157114098 157114180 -85550173 + L2 LINE L2 2633 2715 -599 675 229 17 74 chr1 157114197 157114317 -85550036 - MER58A DNA MER1_type -175 166 58 1935 122 0 94 chr1 157114317 157114637 -85549716 + AluSx SINE Alu 1 290 -22 675 229 17 74 chr1 157114637 157114691 -85549662 - MER58A DNA MER1_type -283 58 2 631 260 69 132 chr1 157114691 157115017 -85549336 + L2 LINE L2 2698 2962 -351 2398 79 0 3 chr1 157115017 157115321 -85549032 + AluSc SINE Alu 7 309 0 631 260 69 132 chr1 157115321 157115637 -85548716 + L2 LINE L2 2962 3297 -16 1710 77 0 5 chr1 157115974 157116196 -85548157 + AluSc SINE Alu 84 304 -5 24 67 0 0 chr1 157116940 157116985 -85547368 + AT_rich Low_complexity Low_complexity 1 45 0 396 333 91 71 chr1 157117469 157117833 -85546520 - L2 LINE L2 0 3272 2905 373 265 0 12 chr1 157117875 157117958 -85546395 + L2 LINE L2 3199 3280 -33 2266 148 77 5 chr1 157119009 157119413 -85544940 - Tigger2a DNA MER2_type 0 434 2 211 257 73 37 chr1 157121101 157121210 -85543143 + MIR SINE MIR 79 191 -71 406 117 283 0 chr1 157121425 157121529 -85542824 + L1MC1 LINE L1 6199 7783 -2 2281 85 7 0 chr1 157121538 157121831 -85542522 + AluSg SINE Alu 1 295 -15 21 36 0 0 chr1 157122594 157122622 -85541731 + AT_rich Low_complexity Low_complexity 1 28 0 2388 82 3 0 chr1 157123856 157124159 -85540194 - AluSp SINE Alu -9 304 1 264 228 30 127 chr1 157124479 157124676 -85539677 - MIR SINE MIR -36 226 49 203 292 0 15 chr1 157124729 157124794 -85539559 + MIR SINE MIR 181 244 -18 231 356 0 10 chr1 157125960 157126061 -85538292 + L2 LINE L2 2990 3089 -183 395 265 87 65 chr1 157127343 157127528 -85536825 - MIR3 SINE MIR -1 207 19 545 346 39 17 chr1 157128897 157129131 -85535222 + MIR SINE MIR 14 252 -10 221 144 3 0 chr1 157130227 157130267 -85534086 - MIR SINE MIR -63 145 110 246 32 0 0 chr1 157130324 157130355 -85533998 + (TG)n Simple_repeat Simple_repeat 1 31 0 460 241 92 14 chr1 157131566 157131707 -85532646 + MIR SINE MIR 94 245 -17 222 289 40 13 chr1 157131727 157131803 -85532550 - MIR SINE MIR -115 93 16 190 345 60 9 chr1 157131785 157131901 -85532452 + L2 LINE L2 2938 3059 -213 * 373 159 0 0 chr1 157131983 157132046 -85532307 - L1MB8 LINE L1 -9 6169 6107 246 262 16 0 chr1 157132122 157132183 -85532170 + L2 LINE L2 3192 3253 -19 234 0 0 0 chr1 157132189 157132215 -85532138 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 584 335 26 18 chr1 157133005 157133232 -85531121 - MIR SINE MIR -6 256 28 228 290 0 70 chr1 157133290 157133390 -85530963 - MIR SINE MIR -66 196 104 354 213 260 24 chr1 157133982 157134151 -85530202 + HAL1 LINE L1 3 211 -2296 776 285 95 30 chr1 157134411 157134842 -85529511 + HAL1 LINE L1 639 1097 -1410 2283 229 88 15 chr1 157137792 157138470 -85525883 + L1MC4a LINE L1 7081 7808 0 2275 127 3 0 chr1 157138848 157139156 -85525197 + AluSx SINE Alu 1 309 -3 333 253 0 81 chr1 157140646 157140745 -85523608 - L2 LINE L2 -1 3271 3181 486 248 125 16 chr1 157140782 157140954 -85523399 - MIR SINE MIR -62 146 5 563 322 35 5 chr1 157141857 157142056 -85522297 + MIR SINE MIR 20 224 -38 234 285 133 13 chr1 157142146 157142297 -85522056 + MLT1L LTR MaLR 101 269 -346 1934 152 0 32 chr1 157142914 157143229 -85521124 + AluJo SINE Alu 1 305 -7 1058 52 0 0 chr1 157144127 157144262 -85520091 - L1PA4 LINE L1 -3 6152 6018 1038 187 86 0 chr1 157144281 157144479 -85519874 + MER20 DNA MER1_type 5 219 0 469 268 101 42 chr1 157144574 157144742 -85519611 + MIR SINE MIR 69 246 -16 2352 104 13 0 chr1 157144791 157145098 -85519255 - AluSq SINE Alu -2 311 1 361 310 0 0 chr1 157145108 157145195 -85519158 + L2 LINE L2 3182 3268 -4 365 331 64 55 chr1 157145203 157145514 -85518839 + L2 LINE L2 2944 3257 -15 532 272 186 32 chr1 157145814 157146406 -85517947 + L1ME4a LINE L1 5388 6070 -51 201 311 30 9 chr1 157147922 157148009 -85516344 - MIR SINE MIR -41 167 75 401 324 7 15 chr1 157148144 157148280 -85516073 - MER5A DNA MER1_type 0 189 55 399 299 174 14 chr1 157148365 157148509 -85515844 + MER5A DNA MER1_type 14 180 -9 186 331 47 58 chr1 157148920 157149092 -85515261 - L3 LINE CR1 -49 1528 1359 1262 310 34 22 chr1 157149097 157149298 -85515055 - L3 LINE CR1 -407 1170 973 1525 167 17 24 chr1 157149298 157149586 -85514767 + AluJb SINE Alu 1 286 -26 1262 310 34 22 chr1 157149586 157149881 -85514472 - L3 LINE CR1 -604 973 668 328 66 16 33 chr1 157150036 157150097 -85514256 + L1PA16 LINE L1 6107 6166 0 1206 247 22 53 chr1 157150176 157150267 -85514086 + L1MC4a LINE L1 5254 5346 -2462 2579 130 57 5 chr1 157150267 157150674 -85513679 + MSTC LTR MaLR 1 428 0 1206 247 22 53 chr1 157150674 157150949 -85513404 + L1MC4a LINE L1 5346 5604 -2204 2267 158 42 24 chr1 157150949 157151373 -85512980 - MSTB1 LTR MaLR 0 432 1 1206 247 22 53 chr1 157151373 157151494 -85512859 + L1MC4a LINE L1 5604 5727 -2081 472 294 115 64 chr1 157151497 157151810 -85512543 + L1MC4a LINE L1 5974 6302 -1506 443 223 46 15 chr1 157151915 157152045 -85512308 + L1MC4a LINE L1 6476 6609 -1199 236 123 35 35 chr1 157152053 157152110 -85512243 + L1MEd LINE L1 1019 1075 -5044 367 293 84 54 chr1 157152202 157152369 -85511984 + L1MDa LINE L1 13 184 -5935 352 317 38 32 chr1 157152447 157152633 -85511720 + L1MDa LINE L1 283 469 -5650 2284 119 3 0 chr1 157152680 157152983 -85511370 + AluSx SINE Alu 1 304 -8 1762 146 29 11 chr1 157153217 157153492 -85510861 + AluJb SINE Alu 1 280 -32 653 64 21 0 chr1 157153500 157153594 -85510759 + (GAAAA)n Simple_repeat Simple_repeat 2 97 0 280 271 35 82 chr1 157153595 157153637 -85510716 + L1MDa LINE L1 889 931 -5188 2359 111 0 0 chr1 157153637 157153943 -85510410 + AluSq SINE Alu 1 306 -7 280 271 35 82 chr1 157153943 157154155 -85510198 + L1MDa LINE L1 931 1131 -4988 939 281 139 44 chr1 157154188 157154736 -85509617 + MLT1L LTR MaLR 5 604 -11 483 303 242 22 chr1 157154750 157155089 -85509264 + L1MDa LINE L1 1167 1576 -914 2612 68 0 0 chr1 157155194 157155501 -85508852 + AluY SINE Alu 1 307 -4 2155 110 3 0 chr1 157155571 157155853 -85508500 + AluSx SINE Alu 1 283 -29 436 315 135 14 chr1 157156310 157156567 -85507786 - MARNA DNA Mariner -44 542 229 2720 122 21 5 chr1 157156567 157156993 -85507360 + L1PA13 LINE L1 5731 6163 0 436 315 135 14 chr1 157156993 157157091 -85507262 - MARNA DNA Mariner -357 229 144 614 260 101 62 chr1 157157262 157157296 -85507057 + MIR SINE MIR 1 32 -230 1872 133 89 0 chr1 157157296 157157566 -85506787 + AluSg SINE Alu 1 294 -16 614 260 101 62 chr1 157157566 157157758 -85506595 + MIR SINE MIR 32 236 -26 2611 44 0 7 chr1 157158774 157159072 -85505281 - AluY SINE Alu -15 296 1 184 302 83 10 chr1 157160315 157160390 -85503963 - MIR SINE MIR -57 205 124 1251 217 20 4 chr1 157160390 157160634 -85503719 + MIR SINE MIR 2 249 -13 243 159 23 0 chr1 157160635 157160679 -85503674 - MIR SINE MIR -73 135 91 1078 224 0 11 chr1 157161056 157161328 -85503025 + L1M4 LINE L1 5067 5335 -811 * 1227 183 48 45 chr1 157161326 157161615 -85502738 + L1PB4 LINE L1 5867 6156 0 972 124 0 0 chr1 157161620 157161749 -85502604 + AluSp/q SINE Alu 170 298 -15 2620 193 28 102 chr1 157161767 157162641 -85501712 + L1MA9 LINE L1 5320 6128 -184 791 139 69 14 chr1 157162644 157162788 -85501565 + THE1C LTR MaLR 1 152 -223 5335 104 20 8 chr1 157162791 157163587 -85500766 + THE1C-int LTR MaLR 775 1580 0 2155 121 49 22 chr1 157163587 157163952 -85500401 + THE1C LTR MaLR 1 375 0 274 91 0 0 chr1 157163952 157163996 -85500357 + L1MB2 LINE L1 6127 6170 -1 348 208 14 14 chr1 157164094 157164166 -85500187 - MIR3 SINE MIR -19 189 118 180 288 50 62 chr1 157164125 157164205 -85500148 - L3 LINE CR1 -1170 407 329 * 2177 276 124 15 chr1 157165033 157165987 -85498366 + L2 LINE L2 2253 3313 0 243 227 61 0 chr1 157166051 157166117 -85498236 + MLT1L LTR MaLR 2 71 -544 1692 178 3 44 chr1 157166161 157166459 -85497894 + AluJo SINE Alu 3 288 -24 227 73 49 0 chr1 157166462 157166503 -85497850 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 417 39 0 0 chr1 157166524 157166575 -85497778 + (CA)n Simple_repeat Simple_repeat 1 51 0 222 308 140 19 chr1 157167490 157167597 -85496756 - MIR3 SINE MIR -12 196 77 1620 179 182 0 chr1 157167669 157168026 -85496327 + MSTB LTR MaLR 3 424 -2 2342 93 7 0 chr1 157168620 157168911 -85495442 - AluSg SINE Alu -17 293 1 1910 172 7 7 chr1 157169446 157169749 -85494604 - AluJo SINE Alu -9 303 1 235 357 117 24 chr1 157169915 157170128 -85494225 + MIR SINE MIR 20 252 -10 2107 138 3 0 chr1 157170198 157170495 -85493858 + AluSx SINE Alu 1 298 -14 1820 110 170 25 chr1 157170529 157170847 -85493506 - THE1B LTR MaLR 0 364 1 997 133 84 0 chr1 157171325 157171491 -85492862 + MER20 DNA MER1_type 40 219 0 22 0 0 0 chr1 157171700 157171722 -85492631 + AT_rich Low_complexity Low_complexity 1 22 0 973 262 148 30 chr1 157171932 157172618 -85491735 - L2 LINE L2 -11 3302 2542 444 250 125 35 chr1 157172642 157172786 -85491567 - MIR3 SINE MIR -18 190 34 367 295 143 19 chr1 157172907 157173165 -85491188 + L2 LINE L2 1880 2169 -1145 405 265 46 13 chr1 157173474 157173625 -85490728 + MLT1K LTR MaLR 432 587 -1 442 319 26 49 chr1 157173655 157173921 -85490432 + L2 LINE L2 2213 2472 -842 207 383 45 13 chr1 157174333 157174487 -85489866 + L2 LINE L2 2866 3024 -248 21 0 0 0 chr1 157174574 157174595 -85489758 + AT_rich Low_complexity Low_complexity 1 21 0 572 270 124 33 chr1 157174624 157174898 -85489455 + L1MC4a LINE L1 5040 5338 -808 2303 102 0 0 chr1 157174978 157175272 -85489081 + AluSx SINE Alu 1 294 -18 2645 49 0 3 chr1 157175301 157175609 -85488744 + AluY SINE Alu 1 307 -4 2472 85 0 13 chr1 157175724 157176040 -85488313 - AluSq SINE Alu -1 312 1 425 275 104 35 chr1 157176324 157176611 -85487742 + L1MC4a LINE L1 5600 5906 -1902 850 177 0 0 chr1 157176625 157176755 -85487598 - FLAM_A SINE Alu -3 130 1 311 232 110 0 chr1 157177072 157177154 -85487199 - MIR SINE MIR -155 107 17 461 221 188 17 chr1 157178203 157178384 -85485969 + MIR SINE MIR 17 228 -34 26 30 0 0 chr1 157179694 157179727 -85484626 + GC_rich Low_complexity Low_complexity 1 33 0 216 250 24 0 chr1 157179740 157179824 -85484529 + (CCG)n Simple_repeat Simple_repeat 3 88 0 205 173 13 13 chr1 157180346 157180421 -85483932 + (CCCCG)n Simple_repeat Simple_repeat 5 79 0 323 264 66 8 chr1 157181616 157181737 -85482616 + MIR SINE MIR 79 206 -56 23 54 0 0 chr1 157182413 157182450 -85481903 + AT_rich Low_complexity Low_complexity 1 37 0 349 298 60 48 chr1 157182502 157182610 -85481743 + L2 LINE L2 2944 3049 -264 787 149 0 0 chr1 157182610 157182724 -85481629 - FLAM_C SINE Alu -19 114 1 349 298 60 48 chr1 157182724 157182867 -85481486 + L2 LINE L2 3049 3198 -115 1480 261 126 14 chr1 157183029 157183531 -85480822 + MER20B DNA MER1_type 38 595 -188 1777 138 0 0 chr1 157183532 157183779 -85480574 + AluSx SINE Alu 1 247 -65 1187 192 62 71 chr1 157183779 157184118 -85480235 + MER21A LTR ERV1 513 848 -83 638 231 139 44 chr1 157184234 157184415 -85479938 + L1MC4a LINE L1 5711 5873 -1935 2179 115 3 3 chr1 157184415 157184711 -85479642 - AluSx SINE Alu -16 296 1 638 231 139 44 chr1 157184711 157184845 -85479508 + L1MC4a LINE L1 5873 6056 -1752 346 130 19 0 chr1 157185003 157185057 -85479296 - MLT1E2 LTR MaLR -2 622 568 546 230 0 0 chr1 157185063 157185163 -85479190 - FLAM_A SINE Alu -42 100 1 1851 232 99 14 chr1 157185165 157185669 -85478684 - MLT1E2 LTR MaLR -57 569 23 841 174 0 0 chr1 157185714 157185846 -85478507 + FLAM_C SINE Alu 1 132 -1 2208 107 0 20 chr1 157185882 157186180 -85478173 + AluSx SINE Alu 1 292 -20 2433 63 0 10 chr1 157186347 157186646 -85477707 + AluY SINE Alu 1 296 -15 1622 220 40 83 chr1 157186819 157187100 -85477253 + L1MC5 LINE L1 6652 6944 -1042 756 176 32 0 chr1 157187100 157187225 -85477128 + FLAM_C SINE Alu 2 130 -3 1622 220 40 83 chr1 157187225 157187248 -85477105 + L1MC5 LINE L1 6944 6966 -1020 2298 152 20 50 chr1 157187248 157187689 -85476664 + MSTC LTR MaLR 1 428 0 1622 220 40 83 chr1 157187689 157188020 -85476333 + L1MC5 LINE L1 6966 7258 -728 539 172 0 21 chr1 157189452 157189597 -85474756 + G-rich Low_complexity Low_complexity 4 145 0 237 294 0 15 chr1 157189600 157189668 -85474685 + GA-rich Low_complexity Low_complexity 3 69 0 2175 89 34 0 chr1 157190254 157190547 -85473806 + AluSp SINE Alu 1 303 -10 2070 112 0 24 chr1 157190555 157190851 -85473502 + AluSx SINE Alu 1 289 -23 401 265 112 40 chr1 157190980 157191122 -85473231 + L1MC/D LINE L1 5519 5649 -696 2475 47 23 7 chr1 157191122 157191422 -85472931 + AluY SINE Alu 1 305 -6 401 265 112 40 chr1 157191422 157191478 -85472875 + L1MC/D LINE L1 5649 5700 -645 1695 128 4 0 chr1 157191478 157191712 -85472641 + AluJb SINE Alu 1 235 -77 401 265 112 40 chr1 157191712 157191853 -85472500 + L1MC/D LINE L1 5700 5886 -459 253 210 37 0 chr1 157192125 157192206 -85472147 + (TATAA)n Simple_repeat Simple_repeat 4 87 0 434 319 70 13 chr1 157192476 157192633 -85471720 + MIR SINE MIR 5 170 -92 308 247 93 0 chr1 157192725 157192822 -85471531 - L1MC4 LINE L1 -1323 6719 6614 1573 195 22 0 chr1 157193377 157193654 -85470699 + AluJo SINE Alu 1 283 -29 195 162 0 0 chr1 157193656 157193693 -85470660 + GA-rich Low_complexity Low_complexity 4 40 0 390 209 23 70 chr1 157193753 157193882 -85470471 + MIR SINE MIR 71 193 -69 255 225 270 0 chr1 157194142 157194231 -85470122 - L2 LINE L2 -5 3308 3196 2145 111 3 40 chr1 157194261 157194585 -85469768 - AluSx SINE Alu 0 312 1 2293 80 0 0 chr1 157196002 157196290 -85468063 + AluY SINE Alu 17 304 -7 2465 64 3 0 chr1 157196576 157196873 -85467480 + AluY SINE Alu 1 298 -13 2273 94 17 0 chr1 157196980 157197278 -85467075 + AluSx SINE Alu 1 303 -9 14182 183 40 65 chr1 157197839 157198056 -85466297 - L1MA5A LINE L1 -5 6934 6713 2410 120 120 0 chr1 157198056 157198438 -85465915 - MSTA LTR MaLR 0 428 1 14182 183 40 65 chr1 157198438 157198742 -85465611 - L1MA5A LINE L1 -226 6713 6403 2001 122 52 3 chr1 157198742 157199029 -85465324 - AluSx SINE Alu -11 301 1 14182 183 40 65 chr1 157199029 157199323 -85465030 - L1MA5A LINE L1 -536 6403 6103 195 42 0 0 chr1 157199323 157199347 -85465006 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 14182 183 40 65 chr1 157199347 157200054 -85464299 - L1MA5A LINE L1 -836 6103 5380 378 155 6 18 chr1 157200054 157200136 -85464217 - Alu SINE Alu -1 300 234 268 132 0 0 chr1 157200111 157200149 -85464204 - Alu SINE Alu -265 38 1 * 14182 183 40 65 chr1 157200149 157200720 -85463633 - L1MA5A LINE L1 -1572 5367 4783 346 121 0 17 chr1 157200720 157200778 -85463575 - HY3 scRNA scRNA -2 99 43 14182 183 40 65 chr1 157200778 157201833 -85462520 - L1MA5A LINE L1 -2156 4783 3704 846 163 0 0 chr1 157201833 157201962 -85462391 + FLAM_C SINE Alu 5 133 0 14182 183 40 65 chr1 157201962 157202251 -85462102 - L1MA5A LINE L1 -3235 3704 3409 2619 64 0 0 chr1 157202251 157202562 -85461791 - AluY SINE Alu 0 311 1 14182 183 40 65 chr1 157202562 157205283 -85459070 - L1MA5A LINE L1 -3530 3409 129 247 250 14 0 chr1 157205328 157205400 -85458953 - L1MA5A LINE L1 -6588 201 129 277 236 14 0 chr1 157205406 157205478 -85458875 - L1MA5A LINE L1 -6588 201 129 277 236 14 0 chr1 157205484 157205556 -85458797 - L1MA5A LINE L1 -6588 201 129 926 199 42 0 chr1 157205562 157205728 -85458625 - L1MA5A LINE L1 -6588 201 29 1986 150 3 0 chr1 157206491 157206791 -85457562 - AluSx SINE Alu -11 301 1 1545 199 21 7 chr1 157207088 157207379 -85456974 + AluJb SINE Alu 6 300 -12 1176 144 0 0 chr1 157207823 157207997 -85456356 - FRAM SINE Alu -8 168 1 353 330 70 5 chr1 157208111 157208296 -85456057 - L2 LINE L2 -605 2709 2513 340 308 129 34 chr1 157208857 157209214 -85455139 + L2 LINE L2 334 724 -2590 228 306 0 0 chr1 157209428 157209490 -85454863 + MIR SINE MIR 201 262 0 416 262 16 78 chr1 157209704 157209895 -85454458 - MER5A DNA MER1_type -7 182 4 503 254 99 22 chr1 157209935 157210167 -85454186 - MIR SINE MIR 0 262 13 375 74 0 0 chr1 157210183 157210229 -85454124 - MLT2A1 LTR ERVL 0 453 405 261 0 0 0 chr1 157210229 157210258 -85454095 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 189 0 0 chr1 157210294 157210347 -85454006 + (TA)n Simple_repeat Simple_repeat 1 53 0 2896 72 80 10 chr1 157210347 157210748 -85453605 - MLT2A1 LTR ERVL -15 429 1 1617 132 24 108 chr1 157210767 157211100 -85453253 - AluYb8 SINE Alu -5 313 9 204 158 0 0 chr1 157211224 157211262 -85453091 + CT-rich Low_complexity Low_complexity 5 42 0 1469 91 39 43 chr1 157211865 157212096 -85452257 - MER30 DNA MER1_type 0 230 1 1178 80 0 25 chr1 157212230 157212392 -85451961 - AluY SINE Alu -10 301 144 2127 108 0 41 chr1 157212529 157212843 -85451510 - AluSx SINE Alu -11 301 1 470 96 14 0 chr1 157212896 157212969 -85451384 + (TA)n Simple_repeat Simple_repeat 2 75 0 2401 96 0 3 chr1 157213558 157213860 -85450493 - AluSx SINE Alu -11 301 1 237 237 17 17 chr1 157214078 157214137 -85450216 + MLT1K LTR MaLR 191 249 -339 236 267 0 0 chr1 157214478 157214538 -85449815 + MLT1K LTR MaLR 525 584 -4 2065 125 3 22 chr1 157214730 157215042 -85449311 - AluSg SINE Alu -4 306 1 1735 160 20 29 chr1 157215359 157215665 -85448688 + AluJo SINE Alu 1 303 -9 534 293 30 6 chr1 157216354 157216521 -85447832 + L3 LINE CR1 1269 1439 -138 739 271 55 103 chr1 157216630 157216837 -85447516 + L2 LINE L2 2850 3065 -248 2189 87 0 0 chr1 157216837 157217114 -85447239 - AluSg SINE Alu -6 304 28 739 271 55 103 chr1 157217114 157217393 -85446960 + L2 LINE L2 3065 3313 0 23 0 0 0 chr1 157217768 157217791 -85446562 + AT_rich Low_complexity Low_complexity 1 23 0 4894 99 28 28 chr1 157218035 157218093 -85446260 + L1MA3 LINE L1 5550 5607 -698 1717 157 13 44 chr1 157218093 157218411 -85445942 + AluJo SINE Alu 1 308 -4 4894 99 28 28 chr1 157218411 157218599 -85445754 + L1MA3 LINE L1 5607 5794 -511 2551 68 0 10 chr1 157218599 157218909 -85445444 + AluSg SINE Alu 1 307 -3 4894 99 28 28 chr1 157218909 157219249 -85445104 + L1MA3 LINE L1 5794 6140 -165 2279 80 0 0 chr1 157219249 157219523 -85444830 + AluSg SINE Alu 19 292 -18 4894 99 28 28 chr1 157219523 157219690 -85444663 + L1MA3 LINE L1 6139 6305 0 24 32 0 0 chr1 157219690 157219721 -85444632 + AT_rich Low_complexity Low_complexity 1 31 0 1321 107 48 79 chr1 157219740 157219936 -85444417 + MER49 LTR ERV1 51 252 -671 2429 92 0 0 chr1 157219936 157220241 -85444112 + AluSg SINE Alu 1 305 -5 1321 107 48 79 chr1 157220241 157220252 -85444101 + MER49 LTR ERV1 252 262 -661 2249 90 0 0 chr1 157220252 157220561 -85443792 + AluSg SINE Alu 1 309 0 1321 107 48 79 chr1 157220561 157220603 -85443750 + MER49 LTR ERV1 262 294 -629 431 144 41 28 chr1 157220589 157220703 -85443650 + MER4E LTR ERV1 62 284 -588 * 1576 192 30 57 chr1 157220699 157220759 -85443594 + MER4D LTR ERV1 544 604 -299 2018 141 0 0 chr1 157220759 157221071 -85443282 - AluSx SINE Alu 0 312 1 1399 203 42 3 chr1 157221075 157221361 -85442992 - AluJo SINE Alu -15 297 1 1576 192 30 57 chr1 157221361 157221664 -85442689 + MER4D LTR ERV1 607 903 0 202 188 87 87 chr1 157221665 157221734 -85442619 - MIR SINE MIR -57 151 83 222 250 155 12 chr1 157222906 157222990 -85441363 - L2 LINE L2 -41 3231 3136 329 325 177 25 chr1 157223255 157223979 -85440374 - L2 LINE L2 -400 2914 2081 227 184 202 37 chr1 157224046 157224155 -85440198 - L1ME4a LINE L1 -31 6090 5964 1042 98 0 0 chr1 157224181 157224314 -85440039 - AluSp SINE Alu -180 133 1 1370 120 0 0 chr1 157224323 157224514 -85439839 - AluSg/x SINE Alu -2 310 120 23 0 0 0 chr1 157224514 157224537 -85439816 + AT_rich Low_complexity Low_complexity 1 23 0 2289 96 10 13 chr1 157224549 157224862 -85439491 - AluSx SINE Alu 0 312 1 411 47 203 0 chr1 157224895 157224959 -85439394 + MADE1 DNA Mariner 4 80 0 25 0 0 0 chr1 157224962 157224987 -85439366 + AT_rich Low_complexity Low_complexity 1 25 0 856 230 182 56 chr1 157224988 157225129 -85439224 + Charlie2a DNA MER1_type 1 123 -2659 2033 116 0 48 chr1 157225129 157225439 -85438914 + AluSx SINE Alu 1 295 -17 856 230 182 56 chr1 157225439 157225692 -85438661 + Charlie2a DNA MER1_type 123 445 -2337 2432 86 0 0 chr1 157225694 157225986 -85438367 + AluSx SINE Alu 1 292 -20 997 186 103 8 chr1 157226020 157226283 -85438070 + Charlie2a DNA MER1_type 728 1015 -1847 432 303 52 29 chr1 157226402 157226709 -85437644 - L1ME4a LINE L1 -200 5921 5608 211 250 100 0 chr1 157228661 157228761 -85435592 + MIR SINE MIR 86 195 -67 2347 91 3 0 chr1 157228841 157229138 -85435215 + AluSg SINE Alu 1 298 -12 2542 84 0 0 chr1 157229145 157229454 -85434899 + AluSg SINE Alu 1 309 -1 2111 145 0 0 chr1 157229564 157229874 -85434479 + AluSx SINE Alu 1 310 -2 759 127 5 4 chr1 157229992 157230195 -85434158 + AluSx SINE Alu 3 294 -18 488 172 147 17 chr1 157230393 157230509 -85433844 - L2 LINE L2 0 3313 3183 304 273 204 42 chr1 157230876 157231045 -85433308 + MIR SINE MIR 12 225 -37 1973 132 18 0 chr1 157231045 157231326 -85433027 + AluJb SINE Alu 1 286 -26 304 273 204 42 chr1 157231326 157231372 -85432981 + MIR SINE MIR 225 262 0 261 266 0 0 chr1 157231595 157231659 -85432694 - L1MEd LINE L1 -5468 651 588 1466 208 69 6 chr1 157231677 157231994 -85432359 - MER58B DNA MER1_type 0 341 5 2009 140 3 7 chr1 157232048 157232348 -85432005 + AluSx SINE Alu 1 299 -13 2269 105 3 0 chr1 157232699 157232995 -85431358 - AluSq SINE Alu -16 297 1 29 0 0 0 chr1 157234856 157234885 -85429468 + AT_rich Low_complexity Low_complexity 1 29 0 2276 61 44 3 chr1 157234940 157235234 -85429119 + AluY SINE Alu 1 306 -5 1118 33 13 53 chr1 157235557 157235731 -85428622 + AluY SINE Alu 141 308 0 2224 37 48 0 chr1 157235967 157236268 -85428085 + AluY SINE Alu 1 314 0 668 130 0 0 chr1 157236423 157236523 -85427830 + FRAM SINE Alu 32 131 -45 37 52 0 0 chr1 157236523 157236581 -85427772 + AT_rich Low_complexity Low_complexity 1 58 0 202 345 185 17 chr1 157236591 157236710 -85427643 - MIR3 SINE MIR -6 202 64 1804 268 128 6 chr1 157237119 157237745 -85426608 - MER20B DNA MER1_type -65 718 17 802 353 75 20 chr1 157238117 157238465 -85425888 - L2 LINE L2 -1 3271 2905 1753 164 7 4 chr1 157238939 157239219 -85425134 - AluJb SINE Alu -26 286 6 27 29 0 0 chr1 157239841 157239875 -85424478 + AT_rich Low_complexity Low_complexity 1 34 0 1575 120 124 22 chr1 157240382 157240656 -85423697 + AluSg SINE Alu 1 302 -8 267 245 20 0 chr1 157240658 157240707 -85423646 - MIR SINE MIR -165 97 48 1981 110 3 44 chr1 157240862 157241179 -85423174 - AluSx SINE Alu -8 304 1 226 224 13 66 chr1 157241296 157241372 -85422981 + L1M4 LINE L1 5687 5758 -420 25 0 0 0 chr1 157241403 157241428 -85422925 + AT_rich Low_complexity Low_complexity 1 25 0 339 333 61 0 chr1 157242519 157242633 -85421720 - MIR3 SINE MIR -21 187 67 22 0 0 0 chr1 157243953 157243975 -85420378 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr1 157244966 157244991 -85419362 + (CA)n Simple_repeat Simple_repeat 2 26 0 324 0 0 0 chr1 157245121 157245157 -85419196 + (TG)n Simple_repeat Simple_repeat 2 37 0 2146 262 57 72 chr1 157245972 157246937 -85417416 + L1MCc LINE L1 17 966 -5457 725 261 125 15 chr1 157297524 157297853 -85366500 - L1ME4a LINE L1 0 6121 5757 890 190 5 46 chr1 157298083 157298278 -85366075 + MLT1A1 LTR MaLR 3 189 -176 429 363 102 16 chr1 157298383 157298755 -85365598 - L3 LINE CR1 -890 687 284 1550 171 12 1 chr1 157299027 157299463 -85364890 + MLT1D LTR MaLR 2 505 0 3548 165 16 14 chr1 157299652 157300295 -85364058 - L1MB7 LINE L1 -14 6170 5527 1897 129 81 66 chr1 157300740 157301024 -85363329 - MLT1B LTR MaLR -3 387 94 1959 121 0 0 chr1 157301024 157301288 -85363065 - AluSg SINE Alu -13 297 34 1897 129 81 66 chr1 157301288 157301384 -85362969 - MLT1B LTR MaLR -296 94 1 328 296 67 30 chr1 157302990 157303321 -85361032 - L1MC5 LINE L1 -66 7895 7553 277 228 0 0 chr1 157303642 157303699 -85360654 + L1MA9 LINE L1 5916 5972 -340 283 268 58 51 chr1 157303831 157303969 -85360384 + MIR SINE MIR 48 186 -76 431 18 18 0 chr1 157304018 157304074 -85360279 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 272 222 32 0 chr1 157304705 157304768 -85359585 - MER5A DNA MER1_type -7 182 118 474 331 26 10 chr1 157305361 157305666 -85358687 - L2 LINE L2 -933 2381 2072 956 125 37 0 chr1 157305719 157305855 -85358498 + AluJo SINE Alu 1 141 -171 291 28 0 0 chr1 157306868 157306904 -85357449 + (TG)n Simple_repeat Simple_repeat 2 37 0 878 230 211 41 chr1 157307512 157307930 -85356423 + MLT1J LTR MaLR 23 511 0 296 275 0 0 chr1 157308437 157308506 -85355847 + L3 LINE CR1 1508 1576 -1 224 59 29 0 chr1 157309471 157309505 -85354848 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2344 92 0 0 chr1 157309532 157309826 -85354527 - AluSc SINE Alu -15 294 1 349 286 29 0 chr1 157310699 157310804 -85353549 + MIR SINE MIR 41 148 -114 246 264 85 19 chr1 157311255 157311361 -85352992 - L3 LINE CR1 -488 1089 977 203 315 170 15 chr1 157311475 157311675 -85352678 - MIR SINE MIR -30 232 2 1914 110 7 60 chr1 157313346 157313647 -85350706 + AluSg SINE Alu 26 310 0 538 278 64 86 chr1 157313721 157314299 -85350054 - L2 LINE L2 0 3272 2660 2079 125 0 33 chr1 157314699 157315004 -85349349 - AluSx SINE Alu -17 295 1 1436 204 22 13 chr1 157315757 157316070 -85348283 + MER33 DNA MER1_type 9 324 0 226 300 0 60 chr1 157316119 157316219 -85348134 + MIR SINE MIR 97 190 -72 251 254 53 35 chr1 157316245 157316359 -85347994 + LTR16A LTR ERVL 25 140 -310 1090 330 49 33 chr1 157316393 157317081 -85347272 + HERVL LTR ERVL 3453 4151 -1503 843 345 38 28 chr1 157317087 157317689 -85346664 + HERVL LTR ERVL 4719 5326 -438 415 290 28 6 chr1 157317974 157318192 -85346161 + LTR16A LTR ERVL 188 443 -7 225 200 40 0 chr1 157318335 157318385 -85345968 + MIR3 SINE MIR 144 195 -13 226 328 23 37 chr1 157318421 157318562 -85345791 - MIR SINE MIR -23 185 40 531 201 176 6 chr1 157318836 157318995 -85345358 - MER5A DNA MER1_type 0 189 4 329 167 42 62 chr1 157320716 157320812 -85343541 - MIR SINE MIR -70 192 99 186 200 22 0 chr1 157321604 157321649 -85342704 + MIR SINE MIR 81 126 -82 216 97 0 0 chr1 157322364 157322395 -85341958 + (A)n Simple_repeat Simple_repeat 1 31 0 222 98 33 33 chr1 157322502 157322563 -85341790 + A-rich Low_complexity Low_complexity 4 64 0 278 177 188 10 chr1 157322577 157322673 -85341680 + MIR SINE MIR 16 128 -80 300 53 0 0 chr1 157322785 157322823 -85341530 + (TG)n Simple_repeat Simple_repeat 1 38 0 229 26 53 0 chr1 157322823 157322861 -85341492 + (GA)n Simple_repeat Simple_repeat 2 41 0 221 242 143 0 chr1 157323357 157323448 -85340905 - L2 LINE L2 -16 3256 3153 222 258 84 61 chr1 157324268 157324462 -85339891 - MIR SINE MIR -1 261 1 2276 122 3 0 chr1 157326222 157326533 -85337820 + AluSx SINE Alu 1 312 0 203 290 75 56 chr1 157326551 157326658 -85337695 + L2 LINE L2 3154 3262 -10 2225 100 0 3 chr1 157327167 157327458 -85336895 + AluSc SINE Alu 3 292 -17 650 94 0 10 chr1 157327500 157327635 -85336718 + AluSg/x SINE Alu 207 312 0 2242 191 20 47 chr1 157329591 157330100 -85334253 - MLT1D LTR MaLR -10 495 1 214 294 15 15 chr1 157330157 157330225 -85334128 - MIR SINE MIR -174 88 21 * 535 231 53 53 chr1 157330183 157330352 -85334001 + MIR SINE MIR 21 189 -73 278 273 50 10 chr1 157330409 157330508 -85333845 + L2 LINE L2 2629 2731 -583 321 333 39 20 chr1 157330554 157330707 -85333646 + L2 LINE L2 2866 3021 -251 29 47 0 0 chr1 157331039 157331082 -85333271 + AT_rich Low_complexity Low_complexity 1 43 0 748 284 139 26 chr1 157333806 157334290 -85330063 - L2 LINE L2 -26 3287 2751 470 296 76 12 chr1 157334862 157335034 -85329319 + L2 LINE L2 27 209 -3105 525 242 188 5 chr1 157335054 157335240 -85329113 + L2 LINE L2 3094 3313 0 204 257 114 29 chr1 157335823 157335893 -85328460 + L2 LINE L2 3134 3209 -63 554 217 87 0 chr1 157336835 157336973 -85327380 + Charlie7 DNA MER1_type 8 157 -2455 445 197 43 26 chr1 157336952 157337069 -85327284 + Charlie7 DNA MER1_type 2489 2607 -5 * 1088 128 0 6 chr1 157338959 157339139 -85325214 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4325 70 28 14 chr1 157339139 157339706 -85324647 + LTR14C LTR ERVK 12 586 -1 1138 90 11 11 chr1 157339707 157339718 -85324635 + (TTTC)n Simple_repeat Simple_repeat 1 189 0 1138 90 11 11 chr1 157339718 157339896 -85324457 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 24751 140 6 7 chr1 157339953 157343952 -85320401 - L1P LINE L1 -945 5201 1205 1949 135 34 0 chr1 157344768 157345065 -85319288 + AluSc SINE Alu 1 307 -2 1867 149 39 36 chr1 157346099 157346167 -85318186 - L1PA16 LINE L1 -2 6164 6098 3076 76 0 18 chr1 157346167 157346549 -85317804 - THE1C LTR MaLR 0 375 1 1867 149 39 36 chr1 157346549 157346815 -85317538 - L1PA16 LINE L1 -68 6098 5829 1455 116 102 4 chr1 157346822 157347047 -85317306 - L1PA16 LINE L1 -454 5712 5466 * 3157 252 11 14 chr1 157347029 157347881 -85316472 + L1 LINE L1 2243 3091 -3055 416 360 30 5 chr1 157349167 157349367 -85314986 - MIR SINE MIR -1 261 57 351 225 12 0 chr1 157349720 157349800 -85314553 - L1ME4a LINE L1 -272 5849 5769 264 77 0 0 chr1 157350628 157350667 -85313686 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 259 226 0 48 chr1 157350675 157350737 -85313616 + L2 LINE L2 3251 3309 -4 22 80 0 0 chr1 157351175 157351225 -85313128 + AT_rich Low_complexity Low_complexity 1 50 0 913 193 0 17 chr1 157351944 157352120 -85312233 + MIR SINE MIR 90 262 0 254 283 0 17 chr1 157352629 157352689 -85311664 - L2 LINE L2 -1 3271 3213 266 255 0 43 chr1 157353471 157353565 -85310788 - L1MC4 LINE L1 -1339 6703 6614 1017 125 3 10 chr1 157353566 157353617 -85310736 + (TA)n Simple_repeat Simple_repeat 1 51 -581 2845 10 0 0 chr1 157353617 157353923 -85310430 + AluY SINE Alu 1 306 -5 1017 125 3 10 chr1 157353923 157354203 -85310150 + (TA)n Simple_repeat Simple_repeat 51 632 0 1544 152 11 41 chr1 157354634 157355068 -85309285 - L1MA9 LINE L1 -1 6311 5795 2150 158 134 8 chr1 157355141 157355521 -85308832 + MSTA LTR MaLR 1 428 0 10454 135 9 38 chr1 157355523 157357147 -85307206 + MSTA-int LTR MaLR 3 1579 -1 2026 166 147 8 chr1 157357150 157357524 -85306829 + MSTA LTR MaLR 3 428 0 1704 161 6 59 chr1 157357700 157358024 -85306329 + AluSx SINE Alu 5 311 -1 361 202 134 84 chr1 157358205 157358324 -85306029 - MLT1J LTR MaLR -295 186 27 1239 238 57 75 chr1 157358368 157359031 -85305322 - L2 LINE L2 -1 3312 2651 1809 181 26 34 chr1 157359056 157359471 -85304882 + MER66A LTR ERV1 27 438 -40 272 247 52 0 chr1 157359478 157359555 -85304798 - L2 LINE L2 -693 2621 2541 269 303 125 20 chr1 157360181 157360333 -85304020 + MIR SINE MIR 41 208 -54 626 228 81 0 chr1 157360532 157360655 -85303698 + FLAM_A SINE Alu 1 133 0 6839 85 30 1 chr1 157360657 157362482 -85301871 + L1PA11 LINE L1 4337 6174 0 187 301 62 62 chr1 157362577 157362690 -85301663 - L2 LINE L2 -10 3262 3150 232 250 0 16 chr1 157363603 157363667 -85300686 + L1ME LINE L1 5719 5781 -340 495 214 176 53 chr1 157363718 157363905 -85300448 + MER58C DNA MER1_type 1 210 -5 825 214 148 96 chr1 157363979 157364507 -85299846 - MLT1G LTR MaLR 0 590 16 854 260 19 10 chr1 157364757 157364965 -85299388 + MIR SINE MIR 17 226 -36 326 279 34 93 chr1 157365131 157365335 -85299018 + LTR67 LTR ERVL 366 557 0 203 338 0 0 chr1 157366997 157367065 -85297288 + MIR SINE MIR 144 211 -51 4266 102 42 44 chr1 157367136 157367801 -85296552 + L1P3 LINE L1 635 1298 -5163 7508 62 5 5 chr1 157367802 157369374 -85294979 + L1PA8 LINE L1 4614 6172 0 2512 54 0 29 chr1 157370929 157371245 -85293108 - AluY SINE Alu -4 307 1 333 237 31 10 chr1 157371458 157371555 -85292798 - MIR3 SINE MIR -1 207 109 1625 174 7 24 chr1 157371579 157371866 -85292487 + AluJo SINE Alu 1 282 -30 236 245 0 0 chr1 157371901 157371950 -85292403 - L2 LINE L2 0 3313 3265 290 226 188 8 chr1 157372208 157372341 -85292012 - MER103 DNA DNA -7 159 3 219 227 0 0 chr1 157372373 157372417 -85291936 + CT-rich Low_complexity Low_complexity 3 46 0 813 260 127 64 chr1 157372975 157373441 -85290912 + L2 LINE L2 2818 3312 -1 210 315 19 46 chr1 157374412 157374520 -85289833 + MIR SINE MIR 1 105 -157 460 260 59 83 chr1 157374689 157374943 -85289410 - L2 LINE L2 -25 3288 3041 292 341 48 36 chr1 157375193 157375360 -85288993 + L2 LINE L2 2509 2677 -637 280 236 14 0 chr1 157375663 157375735 -85288618 + LTR33A LTR ERVL 450 522 -1 2475 71 0 3 chr1 157377217 157377526 -85286827 - AluY SINE Alu -3 308 1 195 319 37 86 chr1 157378223 157378386 -85285967 + L3 LINE CR1 1377 1531 -46 231 312 55 37 chr1 157378551 157378660 -85285693 + MIR SINE MIR 34 144 -64 697 247 114 62 chr1 157379108 157379416 -85284937 + L2 LINE L2 2989 3312 -1 291 333 42 0 chr1 157380816 157380936 -85283417 + MIR SINE MIR 29 153 -55 201 360 103 11 chr1 157381155 157381330 -85283023 + L2 LINE L2 2922 3112 -160 15955 120 21 6 chr1 157381746 157384129 -85280224 - Tigger1 DNA MER2_type 0 2418 2 1401 282 48 84 chr1 157384132 157384874 -85279479 - MER21B LTR ERV1 -147 716 1 323 254 105 9 chr1 157384885 157384999 -85279354 - MIR SINE MIR -109 153 29 194 191 24 24 chr1 157385395 157385479 -85278874 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 208 324 0 28 chr1 157385613 157385684 -85278669 + C-rich Low_complexity Low_complexity 2 70 0 191 283 222 0 chr1 157385744 157385843 -85278510 - MIR SINE MIR -26 236 116 781 186 7 7 chr1 157385846 157385991 -85278362 - MLT1A1 LTR MaLR -218 147 3 725 261 125 15 chr1 157386221 157386550 -85277803 + L1ME4a LINE L1 5757 6121 0 396 333 0 29 chr1 157387320 157387366 -85276987 - MIR3 SINE MIR -41 167 121 2486 81 0 0 chr1 157387366 157387664 -85276689 + AluSg SINE Alu 1 298 -12 396 333 0 29 chr1 157387664 157387788 -85276565 - MIR3 SINE MIR -87 121 2 551 121 137 8 chr1 157388023 157388147 -85276206 - FLAM_C SINE Alu -2 141 2 1148 113 0 48 chr1 157388363 157388531 -85275822 - AluSq SINE Alu -153 160 1 308 317 21 14 chr1 157388925 157389070 -85275283 + MIR SINE MIR 117 262 0 663 235 107 5 chr1 157389955 157390142 -85274211 - MIR SINE MIR -21 241 36 2660 48 0 0 chr1 157390186 157390495 -85273858 - AluY SINE Alu -2 309 1 336 353 108 0 chr1 157390516 157390655 -85273698 - L2 LINE L2 -8 3264 3111 657 150 17 0 chr1 157390779 157390899 -85273454 + FRAM SINE Alu 34 155 -21 27 0 0 0 chr1 157390899 157390926 -85273427 + AT_rich Low_complexity Low_complexity 1 27 0 241 336 26 35 chr1 157390971 157391084 -85273269 - MIR SINE MIR -59 149 38 373 304 109 5 chr1 157391761 157391981 -85272372 + LTR16B LTR ERVL 144 386 -78 344 216 142 46 chr1 157393496 157393731 -85270622 + L2 LINE L2 2942 3268 -45 1056 260 94 21 chr1 157393756 157394233 -85270120 - L1MEc LINE L1 -3525 2690 2179 283 268 62 0 chr1 157394633 157394745 -85269608 - L1MEc LINE L1 -4644 1752 1634 543 291 69 82 chr1 157394932 157395672 -85268681 - L1MEc LINE L1 -4862 1343 614 429 197 34 77 chr1 157396053 157396170 -85268183 + MLT1J LTR MaLR 393 504 -7 2160 167 14 3 chr1 157397963 157398323 -85266030 + MLT1A1 LTR MaLR 2 365 0 637 305 126 30 chr1 157398338 157398830 -85265523 + L2 LINE L2 2259 2797 -517 3423 88 20 30 chr1 157399255 157399746 -85264607 + LTR15 LTR ERV1 1 486 -7 1521 136 0 16 chr1 157400186 157400429 -85263924 - Tigger5 DNA MER2_type 0 2323 2085 319 263 0 13 chr1 157400437 157400513 -85263840 - Tigger5 DNA MER2_type -2248 75 1 189 0 0 0 chr1 157400617 157400638 -85263715 + (A)n Simple_repeat Simple_repeat 1 21 0 328 267 101 85 chr1 157400795 157401230 -85263123 + L2 LINE L2 2872 3313 0 254 295 47 58 chr1 157401258 157401448 -85262905 + L3 LINE CR1 1389 1576 -1 369 0 0 0 chr1 157403096 157403137 -85261216 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr1 157403320 157403341 -85261012 + AT_rich Low_complexity Low_complexity 1 21 0 423 333 0 15 chr1 157403540 157403675 -85260678 + L2 LINE L2 3139 3271 -1 600 244 84 23 chr1 157403963 157404198 -85260155 - MIR SINE MIR -8 254 9 229 328 67 41 chr1 157404329 157404524 -85259829 - MIR SINE MIR -55 207 8 420 271 12 59 chr1 157405352 157405522 -85258831 - MIR SINE MIR -17 245 84 22 56 0 0 chr1 157406312 157406348 -85258005 + AT_rich Low_complexity Low_complexity 1 36 0 1663 189 6 22 chr1 157406648 157406965 -85257388 + AluJo SINE Alu 1 312 0 524 140 11 0 chr1 157406969 157407062 -85257291 + GA-rich Low_complexity Low_complexity 3 96 0 471 198 182 0 chr1 157407237 157407358 -85256995 - MIR3 SINE MIR -46 162 20 219 286 0 0 chr1 157407774 157407830 -85256523 - L2 LINE L2 -16 3256 3201 314 306 100 19 chr1 157408238 157408398 -85255955 + MIR SINE MIR 80 252 -10 349 285 95 13 chr1 157409112 157409270 -85255083 - MIR SINE MIR -3 259 89 187 258 0 16 chr1 157409421 157409483 -85254870 + L2 LINE L2 2695 2755 -559 190 342 94 51 chr1 157409567 157409938 -85254415 + L2 LINE L2 2848 3234 -38 226 289 48 24 chr1 157410002 157410085 -85254268 - L2 LINE L2 0 3272 3188 3284 199 30 33 chr1 157410727 157410755 -85253598 - L1MA9 LINE L1 -38 6274 6247 2298 101 0 7 chr1 157410755 157411051 -85253302 + AluSx SINE Alu 2 295 -17 3284 199 30 33 chr1 157411051 157411790 -85252563 - L1MA9 LINE L1 -65 6247 5509 386 287 0 0 chr1 157411859 157411974 -85252379 - MIR3 SINE MIR -7 201 87 1833 184 67 59 chr1 157412388 157412878 -85251475 - MLT1D LTR MaLR -3 502 9 219 317 100 25 chr1 157413146 157413266 -85251087 + L2 LINE L2 3182 3310 -3 552 201 183 6 chr1 157413937 157414106 -85250247 - MIR SINE MIR -3 259 61 207 0 0 0 chr1 157414939 157414962 -85249391 + (A)n Simple_repeat Simple_repeat 1 23 0 274 277 48 0 chr1 157415377 157415460 -85248893 + MLT1J2 LTR MaLR 73 159 -291 252 195 18 0 chr1 157415504 157415559 -85248794 + MLT1J2 LTR MaLR 264 312 -138 1344 167 10 2 chr1 157415559 157415851 -85248502 + MER2 DNA MER2_type 1 345 0 293 266 13 0 chr1 157415881 157415960 -85248393 + MLT1J1 LTR MaLR 358 437 -9 458 374 29 0 chr1 157416306 157416445 -85247908 + MER91A DNA MER1_type 2 144 -52 2135 106 0 0 chr1 157417091 157417373 -85246980 + AluSg SINE Alu 27 308 -2 445 270 29 54 chr1 157417461 157417656 -85246697 + L1ME LINE L1 5517 5699 -422 189 316 25 0 chr1 157417859 157417938 -85246415 + L2 LINE L2 3229 3309 -4 546 275 12 18 chr1 157420016 157420187 -85244166 + MER91B DNA MER1_type 21 190 0 217 301 73 29 chr1 157420404 157420676 -85243677 + L2 LINE L2 2357 2640 -674 535 229 61 0 chr1 157420895 157421026 -85243327 + MIR SINE MIR 76 214 -48 1554 174 36 7 chr1 157421358 157421639 -85242714 + AluJo SINE Alu 14 302 -10 314 247 52 0 chr1 157421991 157422068 -85242285 + MIR SINE MIR 109 189 -73 1343 192 25 106 chr1 157422293 157422699 -85241654 - MLT1A2 LTR MaLR -1 373 1 1890 123 0 0 chr1 157423302 157423562 -85240791 - AluSc SINE Alu 0 309 50 880 115 15 0 chr1 157424508 157424638 -85239715 - FLAM_C SINE Alu -1 132 1 286 183 100 0 chr1 157425953 157426013 -85238340 - L2 LINE L2 -12 3301 3236 596 310 83 4 chr1 157426111 157426353 -85238000 - MIR SINE MIR -1 261 1 198 156 89 0 chr1 157426898 157426943 -85237410 - L2 LINE L2 0 3313 3265 * 283 299 63 0 chr1 157426909 157427036 -85237317 - MIR SINE MIR -9 253 119 26 0 0 0 chr1 157427840 157427866 -85236487 + AT_rich Low_complexity Low_complexity 1 26 0 545 83 3 3 chr1 157428116 157428130 -85236223 + L1P1 LINE L1 5659 5672 -483 2967 35 0 0 chr1 157428130 157428478 -85235875 - L1PA4 LINE L1 0 6155 5808 545 83 3 3 chr1 157428478 157428542 -85235811 + L1P1 LINE L1 5671 5736 -419 316 241 73 7 chr1 157429986 157430180 -85234173 + MLT1K LTR MaLR 3 246 -342 528 183 124 22 chr1 157430255 157430392 -85233961 + MLT1K LTR MaLR 374 524 -64 279 274 80 99 chr1 157430735 157430947 -85233406 + MLT1K LTR MaLR 192 399 -189 298 303 49 21 chr1 157430949 157431091 -85233262 + MLT1J LTR MaLR 3 148 -363 * 448 213 14 64 chr1 157431090 157431231 -85233122 + MLT1J LTR MaLR 341 474 -37 416 286 53 8 chr1 157433265 157433398 -85230955 + MIR SINE MIR 121 259 -3 295 227 67 42 chr1 157433415 157433534 -85230819 + L2 LINE L2 2770 2891 -423 305 100 20 0 chr1 157433553 157433603 -85230750 + (TC)n Simple_repeat Simple_repeat 1 51 0 344 257 0 0 chr1 157433746 157433820 -85230533 + L2 LINE L2 3240 3313 0 579 289 32 22 chr1 157434087 157434270 -85230083 + MIR3 SINE MIR 21 208 0 227 222 0 19 chr1 157434263 157434317 -85230036 + L2 LINE L2 2707 2759 -555 * 1662 199 3 0 chr1 157434336 157434633 -85229720 + AluJo SINE Alu 1 298 -14 1865 123 35 42 chr1 157436665 157436975 -85227378 - AluSx SINE Alu -4 308 1 223 203 31 0 chr1 157437268 157437332 -85227021 + GA-rich Low_complexity Low_complexity 5 70 0 638 281 64 20 chr1 157437691 157437940 -85226413 + MIR SINE MIR 3 262 0 1368 196 129 39 chr1 157438252 157438615 -85225738 - MSTD LTR MaLR 0 396 1 4381 160 44 7 chr1 157439003 157439711 -85224642 - MER50 LTR ERV1 0 734 1 693 266 68 30 chr1 157440013 157440250 -85224103 - MIR SINE MIR -15 247 2 222 264 59 49 chr1 157440269 157440452 -85223901 - L2 LINE L2 -148 3165 2372 215 304 144 15 chr1 157440454 157440655 -85223698 - L3 LINE CR1 -253 1324 1098 469 311 90 43 chr1 157440818 157441117 -85223236 - L3 LINE CR1 -907 670 358 7647 52 1 1 chr1 157442085 157443683 -85220670 + L1PA7 LINE L1 4553 6150 -4 208 231 0 0 chr1 157443859 157443898 -85220455 + polypurine Low_complexity Low_complexity 4 42 0 234 0 0 0 chr1 157443898 157443924 -85220429 + (TG)n Simple_repeat Simple_repeat 2 27 0 2183 126 0 3 chr1 157444151 157444453 -85219900 + AluSx SINE Alu 1 301 -11 189 0 0 0 chr1 157444453 157444474 -85219879 + (TA)n Simple_repeat Simple_repeat 1 21 0 295 250 71 0 chr1 157444474 157444558 -85219795 - L1MC4 LINE L1 -1339 6703 6614 241 260 0 42 chr1 157444512 157444608 -85219745 + L1MC4 LINE L1 6614 6705 -1337 * 1152 238 21 4 chr1 157444710 157444945 -85219408 + MER8 DNA MER2_type 1 239 0 7608 205 34 24 chr1 157445001 157445352 -85219001 + L1 LINE L1 2903 3249 -2897 751 149 28 0 chr1 157445352 157445459 -85218894 + FLAM_C SINE Alu 7 116 -27 7608 205 34 24 chr1 157445459 157447219 -85217134 + L1 LINE L1 3249 4994 -1152 44001 31 21 0 chr1 157447221 157453238 -85211115 + L1PA2 LINE L1 8 6155 0 1005 200 11 18 chr1 157453237 157453488 -85210865 + L1P LINE L1 4978 5222 -924 * 459 110 8 158 chr1 157453505 157453632 -85210721 + LTR12 LTR ERV1 250 357 -357 5097 133 18 5 chr1 157453651 157454583 -85209770 + L1PA16 LINE L1 5175 6151 -15 4458 167 4 35 chr1 157454847 157455651 -85208702 - L1MA10 LINE L1 0 6334 5556 233 354 37 44 chr1 157455940 157456154 -85208199 - MIR SINE MIR -45 217 5 234 0 0 0 chr1 157456258 157456284 -85208069 + (A)n Simple_repeat Simple_repeat 1 26 0 2213 88 28 0 chr1 157456393 157456678 -85207675 + AluSc SINE Alu 1 293 -16 982 229 0 0 chr1 157456757 157456927 -85207426 + FAM SINE Alu 1 170 -5 308 292 51 29 chr1 157457143 157457280 -85207073 + MIR SINE MIR 67 206 -56 974 312 185 13 chr1 157460024 157460624 -85203729 + L3 LINE CR1 593 1295 -282 887 246 103 38 chr1 157460628 157460969 -85203384 - MER93b LTR ERV1 0 373 11 23 0 0 0 chr1 157460969 157460992 -85203361 + AT_rich Low_complexity Low_complexity 1 23 0 674 238 20 45 chr1 157461188 157461390 -85202963 - MER31-int LTR ERV1 -546 6991 6795 522 258 56 90 chr1 157461378 157461646 -85202707 - MER31-int LTR ERV1 -212 4724 3777 * 4175 192 53 30 chr1 157461627 157462574 -85201779 - MER31-int LTR ERV1 -565 4371 3403 276 53 0 0 chr1 157462576 157462614 -85201739 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1039 124 0 0 chr1 157462644 157462789 -85201564 - AluSg/x SINE Alu -23 289 145 834 247 123 17 chr1 157462806 157463106 -85201247 - MER31-int LTR ERV1 -1626 4705 4374 2839 96 3 0 chr1 157463106 157463460 -85200893 + THE1A LTR MaLR 1 355 0 12425 93 6 9 chr1 157463460 157465045 -85199308 + THE1A-int LTR MaLR 1 1580 0 2395 91 0 38 chr1 157465045 157465385 -85198968 + THE1A LTR MaLR 1 327 -28 784 121 53 15 chr1 157465392 157465524 -85198829 - MER31-int LTR ERV1 -2153 4178 4042 2005 124 3 20 chr1 157465536 157465834 -85198519 + AluSx SINE Alu 1 293 -19 226 161 37 37 chr1 157465835 157465916 -85198437 + (TTAAA)n Simple_repeat Simple_repeat 4 84 0 378 216 0 0 chr1 157465932 157466020 -85198333 - MER31-int LTR ERV1 -3072 1864 1777 3032 201 93 66 chr1 157466157 157467589 -85196764 - MER31-int LTR ERV1 -2339 3607 891 992 232 44 14 chr1 157467695 157468013 -85196340 - MER34C LTR ERV1 -155 430 60 4396 89 4 2 chr1 157468346 157468899 -85195454 + MER41A LTR ERV1 1 554 0 255 174 0 0 chr1 157469293 157469339 -85195014 - MER31-int LTR ERV1 -6748 789 744 626 225 18 30 chr1 157469930 157470099 -85194254 - MER93b LTR ERV1 0 373 207 721 191 17 0 chr1 157470104 157470219 -85194134 + FLAM_C SINE Alu 2 118 -25 21 0 0 0 chr1 157470265 157470286 -85194067 + AT_rich Low_complexity Low_complexity 1 21 0 275 117 70 23 chr1 157470287 157470458 -85193895 + (TA)n Simple_repeat Simple_repeat 2 180 0 467 248 60 17 chr1 157470489 157470606 -85193747 - MER93b LTR ERV1 -238 135 14 243 238 231 34 chr1 157470621 157470751 -85193602 + L3 LINE CR1 1375 1538 -39 501 17 0 0 chr1 157470751 157470809 -85193544 + (CA)n Simple_repeat Simple_repeat 2 59 0 243 238 231 34 chr1 157470809 157470825 -85193528 + L3 LINE CR1 1538 1550 -27 * 768 243 74 5 chr1 157470824 157471013 -85193340 + MIR SINE MIR 59 260 -2 840 264 108 0 chr1 157471066 157471278 -85193075 + MIR SINE MIR 3 237 -25 6317 123 42 17 chr1 157471280 157472172 -85192181 - Tigger3b DNA MER2_type -1797 1231 306 2464 79 0 16 chr1 157472172 157472489 -85191864 + AluSq SINE Alu 2 313 0 6317 123 42 17 chr1 157472489 157472661 -85191692 - Tigger3b DNA MER2_type -2722 306 140 629 82 10 0 chr1 157472661 157472758 -85191595 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 1736 221 84 7 chr1 157472758 157473271 -85191082 - MLT2F LTR ERVL -65 598 1 304 285 98 0 chr1 157473461 157473584 -85190769 + MER69 DNA AcHobo 1 135 -2391 539 297 145 37 chr1 157473845 157474246 -85190107 + MLT1J2 LTR MaLR 7 450 0 2243 109 7 0 chr1 157474294 157474597 -85189756 - AluSg SINE Alu -5 305 1 22 35 0 0 chr1 157475191 157475220 -85189133 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 157476002 157476030 -85188323 + AT_rich Low_complexity Low_complexity 1 28 0 394 297 58 7 chr1 157476104 157476242 -85188111 - L2 LINE L2 -5 3267 3123 300 291 48 145 chr1 157476242 157476531 -85187822 + L1MEd LINE L1 311 571 -5548 198 0 0 0 chr1 157476548 157476570 -85187783 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1615 251 100 24 chr1 157476570 157477108 -85187245 + MLT1G1 LTR MaLR 17 595 0 455 216 46 26 chr1 157477226 157477379 -85186974 + L1MEd LINE L1 682 837 -5282 1054 223 30 83 chr1 157477418 157477754 -85186599 - MLT1J LTR MaLR -8 503 186 1397 160 100 0 chr1 157477995 157478276 -85186077 + MLT1C LTR MaLR 6 314 -153 876 214 36 48 chr1 157478367 157478619 -85185734 - MER69 DNA AcHobo -257 2269 2021 461 224 43 9 chr1 157478624 157478740 -85185613 - MER69 DNA AcHobo -425 801 682 979 152 0 13 chr1 157478740 157478891 -85185462 + AluJb SINE Alu 2 150 -162 601 295 34 3 chr1 157478916 157479129 -85185224 + L1ME LINE L1 5505 5714 -456 * 1211 124 82 0 chr1 157479126 157479320 -85185033 + L1MA5A LINE L1 6050 6259 -38 955 160 0 13 chr1 157479324 157479474 -85184879 - AluJb SINE Alu -164 148 1 2063 128 42 0 chr1 157480001 157480290 -85184063 - AluSx SINE Alu -11 301 1 1835 159 0 10 chr1 157480290 157480592 -85183761 - AluJo SINE Alu -13 299 1 3290 161 56 13 chr1 157480666 157481275 -85183078 + LTR24C LTR ERV1 1 635 0 675 212 8 8 chr1 157481301 157481439 -85182914 + FLAM_C SINE Alu 1 138 0 1944 167 104 19 chr1 157481485 157481850 -85182503 - MSTD LTR MaLR 0 396 1 4423 118 3 5 chr1 157481907 157482518 -85181835 - MER4B LTR ERV1 0 610 1 564 293 39 17 chr1 157482590 157482822 -85181531 - LTR16C LTR ERVL -1 490 254 1030 136 23 28 chr1 157482889 157483065 -85181288 - LTR9B LTR ERV1 0 644 470 432 0 0 0 chr1 157483128 157483176 -85181177 + (CA)n Simple_repeat Simple_repeat 2 49 0 1662 174 58 39 chr1 157483202 157483563 -85180790 - THE1C LTR MaLR -7 368 1 2315 104 0 13 chr1 157484470 157484778 -85179575 + AluSx SINE Alu 2 305 -7 2221 80 10 7 chr1 157485401 157485690 -85178663 - AluSq SINE Alu -23 290 1 325 188 118 24 chr1 157485709 157485794 -85178559 - L2 LINE L2 -18 3295 3203 1500 184 156 67 chr1 157486078 157486541 -85177812 - MLT1D LTR MaLR -1 504 1 702 205 20 36 chr1 157486649 157486844 -85177509 - L1MC4a LINE L1 -1976 5832 5641 1350 130 101 32 chr1 157486969 157487246 -85177107 - L1MB8 LINE L1 -1 6177 5882 499 151 65 11 chr1 157487246 157487339 -85177014 + MER4A LTR ERV1 1 98 -566 1696 131 166 74 chr1 157487339 157487706 -85176647 + MER4A LTR ERV1 261 661 -3 764 119 142 0 chr1 157487710 157487844 -85176509 - L1MB8 LINE L1 -293 5885 5733 1378 167 48 48 chr1 157487844 157488114 -85176239 - AluJo SINE Alu -42 270 1 1128 137 0 0 chr1 157488209 157488377 -85175976 - FRAM SINE Alu -11 165 1 22 0 0 0 chr1 157488632 157488654 -85175699 + GC_rich Low_complexity Low_complexity 1 22 0 2431 83 0 0 chr1 157489588 157489888 -85174465 - AluSx SINE Alu -12 300 1 184 170 128 0 chr1 157490040 157490087 -85174266 + MIR3 SINE MIR 111 163 -45 693 33 11 0 chr1 157492006 157492098 -85172255 - AluY SINE Alu -29 282 190 2176 116 3 3 chr1 157493251 157493543 -85170810 - AluSp SINE Alu -21 292 1 207 311 16 0 chr1 157494904 157494965 -85169388 - MIR SINE MIR -121 141 80 337 287 43 17 chr1 157495544 157495659 -85168694 - L2 LINE L2 -139 3133 3016 356 315 91 75 chr1 157495872 157496301 -85168052 + L2 LINE L2 2831 3266 -6 2486 79 7 0 chr1 157496884 157497187 -85167166 + AluSc SINE Alu 1 305 -4 280 264 189 0 chr1 157497259 157497365 -85166988 + MIR SINE MIR 124 249 -13 275 266 196 23 chr1 157497611 157497784 -85166569 + MIR SINE MIR 60 262 0 202 200 0 0 chr1 157499058 157499093 -85165260 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 198 118 0 0 chr1 157500597 157500631 -85163722 + (TG)n Simple_repeat Simple_repeat 2 35 0 192 179 0 0 chr1 157501013 157501052 -85163301 + T-rich Low_complexity Low_complexity 2 40 0 1541 163 13 58 chr1 157501153 157501260 -85163093 + AluJo SINE Alu 11 121 -191 186 71 0 0 chr1 157501260 157501288 -85163065 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1541 163 13 58 chr1 157501288 157501493 -85162860 + AluJo SINE Alu 121 309 -3 180 0 0 0 chr1 157502226 157502246 -85162107 + (T)n Simple_repeat Simple_repeat 1 20 0 387 264 50 7 chr1 157502364 157502504 -85161849 + MIR3 SINE MIR 58 203 -5 2501 67 0 0 chr1 157502662 157502962 -85161391 + AluY SINE Alu 1 300 -11 775 203 28 57 chr1 157503333 157503401 -85160952 - MER45A DNA AcHobo -1405 176 108 2204 104 3 0 chr1 157503401 157503689 -85160664 + AluSg SINE Alu 1 289 -21 775 203 28 57 chr1 157503689 157503797 -85160556 - MER45A DNA AcHobo -1473 108 5 1822 128 59 7 chr1 157503971 157504261 -85160092 - AluSx SINE Alu -7 305 1 459 254 42 0 chr1 157504341 157504459 -85159894 + MER103 DNA DNA 1 123 -43 294 285 40 73 chr1 157505050 157505201 -85159152 - MIR SINE MIR -58 150 5 2437 82 0 3 chr1 157506943 157507247 -85157106 - AluSx SINE Alu -9 303 1 2363 222 38 66 chr1 157507635 157508418 -85155935 + L1M4 LINE L1 3929 4689 -1457 367 162 103 0 chr1 157508418 157508486 -85155867 - Charlie3 DNA MER1_type -2635 75 1 5853 69 25 3 chr1 157509999 157511089 -85153264 - L1PA8 LINE L1 -3 6169 5003 5627 70 303 1 chr1 157511089 157512018 -85152335 - L1PA8 LINE L1 -1957 4189 2981 2199 119 0 0 chr1 157512018 157512304 -85152049 - AluSx SINE Alu -26 286 1 569 298 65 20 chr1 157512374 157512622 -85151731 + MIR SINE MIR 4 262 0 241 175 123 0 chr1 157512675 157512732 -85151621 - L2 LINE L2 0 3313 3250 2037 124 3 38 chr1 157513790 157514104 -85150249 + AluSx SINE Alu 1 303 -9 24 53 0 0 chr1 157514460 157514498 -85149855 + AT_rich Low_complexity Low_complexity 1 38 0 294 73 0 0 chr1 157516059 157516100 -85148253 + (CATA)n Simple_repeat Simple_repeat 2 42 0 2118 116 11 0 chr1 157516114 157516398 -85147955 - AluSx SINE Alu -25 287 1 264 264 99 50 chr1 157516429 157516630 -85147723 - L1M4 LINE L1 -2744 3402 3192 1304 219 118 2 chr1 157516997 157517064 -85147289 - L1M4 LINE L1 -2936 3210 3152 2283 111 3 3 chr1 157517064 157517371 -85146982 - AluSp SINE Alu -6 307 1 1304 219 118 2 chr1 157517371 157517736 -85146617 - L1M4 LINE L1 -2994 3152 2728 918 198 6 0 chr1 157517744 157517916 -85146437 + AluJo SINE Alu 123 295 -17 9678 210 39 55 chr1 157517917 157518414 -85145939 - L1M4 LINE L1 -1070 5076 4573 1844 164 13 0 chr1 157518414 157518712 -85145641 - AluJo SINE Alu -10 302 1 9678 210 39 55 chr1 157518712 157519365 -85144988 - L1M4 LINE L1 -1573 4573 3911 1993 153 6 10 chr1 157519365 157519678 -85144675 + AluSx SINE Alu 1 312 0 9678 210 39 55 chr1 157519678 157521404 -85142949 - L1M4 LINE L1 -2235 3911 2245 21 36 0 0 chr1 157521404 157521432 -85142921 + AT_rich Low_complexity Low_complexity 1 28 0 1950 154 25 0 chr1 157521449 157521734 -85142619 + AluSx SINE Alu 3 294 -18 5280 132 53 46 chr1 157521735 157522854 -85141499 - L1MA7 LINE L1 -6 6285 5160 577 119 46 55 chr1 157524013 157524122 -85140231 - L1PA16 LINE L1 -66 6100 5993 202 355 134 19 chr1 157524380 157524642 -85139711 + L2 LINE L2 2880 3171 -101 1544 205 17 14 chr1 157525628 157525921 -85138432 - AluJo SINE Alu -18 294 1 21 0 0 0 chr1 157525923 157525944 -85138409 + AT_rich Low_complexity Low_complexity 1 21 0 765 125 0 0 chr1 157526146 157526250 -85138103 - U6 snRNA snRNA -3 104 1 1641 185 18 4 chr1 157526633 157526914 -85137439 - AluJo SINE Alu -27 285 1 243 0 0 0 chr1 157526928 157526955 -85137398 + (TA)n Simple_repeat Simple_repeat 1 27 0 1296 240 111 12 chr1 157527009 157527334 -85137019 - LTR18A LTR ERVL 0 357 1 41806 121 21 18 chr1 157527335 157533365 -85130988 - HERVL18 LTR ERVL 0 6047 2 1442 222 97 12 chr1 157533372 157533701 -85130652 - LTR18A LTR ERVL 0 357 1 212 227 0 0 chr1 157533727 157533771 -85130582 - MIR3 SINE MIR -14 194 151 22 56 0 0 chr1 157533784 157533820 -85130533 + AT_rich Low_complexity Low_complexity 1 36 0 2089 113 17 14 chr1 157534088 157534381 -85129972 - AluSx SINE Alu -18 294 1 432 302 7 7 chr1 157534564 157534703 -85129650 + MIR SINE MIR 42 180 -82 326 310 51 13 chr1 157534831 157534989 -85129364 + L1ME4a LINE L1 5734 5897 -224 26 30 0 0 chr1 157535042 157535075 -85129278 + AT_rich Low_complexity Low_complexity 1 33 0 2269 117 0 0 chr1 157535075 157535375 -85128978 + AluSx SINE Alu 1 300 -12 6762 171 18 38 chr1 157535381 157536771 -85127582 - L1MA3 LINE L1 -10 6295 4878 251 31 0 0 chr1 157536771 157536803 -85127550 + LTR39 LTR ERV1 400 431 -352 6762 171 18 38 chr1 157536803 157536816 -85127537 - L1MA3 LINE L1 -1427 4878 4866 9159 189 28 19 chr1 157536816 157537830 -85126523 - L1PA15 LINE L1 0 6165 5162 1900 178 0 0 chr1 157537830 157538134 -85126219 - AluJb SINE Alu -8 304 1 9159 189 28 19 chr1 157538134 157539875 -85124478 - L1PA15 LINE L1 -1003 5162 3374 6762 171 18 38 chr1 157539875 157540730 -85123623 - L1MA3 LINE L1 -1439 4866 4066 983 303 86 55 chr1 157541061 157541099 -85123254 + L2 LINE L2 2293 2328 -985 2802 170 14 29 chr1 157541099 157541612 -85122741 - MLT1D LTR MaLR 0 505 1 983 303 86 55 chr1 157541612 157542504 -85121849 + L2 LINE L2 2328 3246 -67 554 205 82 0 chr1 157545832 157545954 -85118399 + FLAM_A SINE Alu 1 132 -1 203 204 19 0 chr1 157546842 157546896 -85117457 + CT-rich Low_complexity Low_complexity 1 55 0 809 179 0 8 chr1 157547167 157547301 -85117052 + AluJo SINE Alu 7 139 -173 1593 138 31 8 chr1 157547302 157547562 -85116791 + AluJb SINE Alu 42 307 -5 351 0 0 0 chr1 157548030 157548069 -85116284 + (CA)n Simple_repeat Simple_repeat 1 39 0 4207 164 37 12 chr1 157548994 157549770 -85114583 - L1MB8 LINE L1 0 6178 5383 582 299 66 77 chr1 157549957 157550237 -85114116 + L2 LINE L2 2850 3124 -189 821 154 0 15 chr1 157550237 157550367 -85113986 - FLAM_C SINE Alu -5 128 1 582 299 66 77 chr1 157550367 157550555 -85113798 + L2 LINE L2 3124 3313 0 243 159 0 0 chr1 157550706 157550750 -85113603 + MIR SINE MIR 109 152 -110 1158 213 119 10 chr1 157550842 157551152 -85113201 + MER2 DNA MER2_type 1 344 0 614 197 74 0 chr1 157551189 157551311 -85113042 + FLAM_C SINE Alu 1 131 -2 1486 163 0 0 chr1 157551536 157551757 -85112596 - AluJb SINE Alu -19 293 73 403 216 0 29 chr1 157552404 157552506 -85111847 + MIR SINE MIR 162 260 -2 1622 122 0 14 chr1 157552680 157552901 -85111452 + AluSx SINE Alu 1 218 -94 400 182 0 0 chr1 157552932 157552998 -85111355 + L1MB7 LINE L1 6000 6065 -119 1267 111 81 15 chr1 157553324 157553522 -85110831 - AluJo SINE Alu -17 295 85 2778 29 0 0 chr1 157555351 157555657 -85108696 + AluY SINE Alu 1 306 -5 378 0 0 0 chr1 157556053 157556095 -85108258 + (TG)n Simple_repeat Simple_repeat 2 43 0 28 48 0 0 chr1 157556670 157556712 -85107641 + AT_rich Low_complexity Low_complexity 1 42 0 488 275 24 45 chr1 157556854 157557101 -85107252 - L1ME4a LINE L1 -152 5969 5728 1352 96 0 0 chr1 157557102 157557269 -85107084 - AluSq SINE Alu -13 300 134 2359 110 0 0 chr1 157557269 157557570 -85106783 - AluSx SINE Alu -11 301 1 297 157 0 0 chr1 157557575 157557626 -85106727 - L1ME4a LINE L1 -2084 5724 5674 2325 92 0 0 chr1 157557779 157558073 -85106280 + AluSg SINE Alu 1 294 -16 331 300 57 14 chr1 157558099 157558239 -85106114 + MER5A DNA MER1_type 44 189 0 2336 101 42 28 chr1 157559072 157559430 -85104923 - THE1B LTR MaLR 0 364 2 957 140 40 7 chr1 157559495 157559645 -85104708 + AluSg/x SINE Alu 136 290 -22 201 138 0 0 chr1 157559645 157559674 -85104679 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 602 276 7 7 chr1 157559683 157559828 -85104525 - L2 LINE L2 0 3313 3169 347 157 0 0 chr1 157560327 157560378 -85103975 - Alu SINE Alu -247 53 3 2610 44 0 0 chr1 157560683 157560978 -85103375 + AluY SINE Alu 1 295 -16 22 56 0 0 chr1 157561132 157561168 -85103185 + AT_rich Low_complexity Low_complexity 1 36 0 537 124 0 83 chr1 157561365 157561558 -85102795 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 938 69 8 0 chr1 157561587 157561718 -85102635 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 1716 121 19 23 chr1 157561729 157561986 -85102367 - AluSq SINE Alu -55 258 3 308 215 13 158 chr1 157562216 157562258 -85102095 + L3 LINE CR1 626 672 -905 1596 183 18 7 chr1 157562258 157562542 -85101811 - AluJo SINE Alu -25 287 1 308 215 13 158 chr1 157562542 157562657 -85101696 + L3 LINE CR1 672 760 -817 378 310 26 13 chr1 157562686 157562841 -85101512 + MIR SINE MIR 28 184 -78 2157 117 0 0 chr1 157564039 157564329 -85100024 - AluSg SINE Alu -20 290 1 2410 128 57 21 chr1 157564352 157564774 -85099579 - LTR23 LTR ERV1 0 437 1 2756 56 14 0 chr1 157565792 157566171 -85098182 - L1PA5 LINE L1 0 6154 5789 4230 137 45 20 chr1 157566216 157566259 -85098094 - LTR8A LTR ERV1 0 727 687 4329 124 8 8 chr1 157566259 157566894 -85097459 - MER41B LTR ERV1 0 635 1 4230 137 45 20 chr1 157566894 157567559 -85096794 - LTR8A LTR ERV1 -40 687 1 21 0 0 0 chr1 157568167 157568188 -85096165 + AT_rich Low_complexity Low_complexity 1 21 0 467 290 89 0 chr1 157568649 157568818 -85095535 - L2 LINE L2 -2 3311 3128 227 269 29 96 chr1 157569038 157569114 -85095239 - L2 LINE L2 -17 3255 3186 2404 86 7 0 chr1 157569114 157569417 -85094936 + AluSq SINE Alu 1 305 -8 227 269 29 96 chr1 157569417 157569444 -85094909 - L2 LINE L2 -86 3186 3159 396 207 267 0 chr1 157569489 157569605 -85094748 + MER5A DNA MER1_type 40 186 -3 202 249 32 146 chr1 157569647 157569956 -85094397 - L2 LINE L2 -191 3081 2808 1845 193 66 21 chr1 157569978 157570357 -85093996 - MSTD LTR MaLR 0 396 1 198 240 0 0 chr1 157570379 157570429 -85093924 + CT-rich Low_complexity Low_complexity 3 52 0 2104 171 26 0 chr1 157570511 157570890 -85093463 - L1MA9 LINE L1 -32 6280 5892 718 172 8 15 chr1 157570915 157571049 -85093304 - FLAM_C SINE Alu 0 133 1 2330 91 0 0 chr1 157571859 157572168 -85092185 + AluSq SINE Alu 1 309 0 526 269 53 37 chr1 157572477 157572722 -85091631 + MIR SINE MIR 13 261 -1 2195 107 21 0 chr1 157572788 157573079 -85091274 + AluSq SINE Alu 1 297 -16 392 173 218 0 chr1 157573161 157573271 -85091082 - MER5A DNA MER1_type -26 163 30 621 196 106 0 chr1 157573291 157573434 -85090919 + MER33 DNA MER1_type 1 202 -161 191 158 45 34 chr1 157573434 157573611 -85090742 + (TA)n Simple_repeat Simple_repeat 2 180 0 400 134 157 34 chr1 157573641 157573811 -85090542 + Charlie5 DNA MER1_type 2377 2602 -10 314 245 50 43 chr1 157574001 157574140 -85090213 - MIR SINE MIR -60 202 63 639 167 0 125 chr1 157574575 157574743 -85089610 + MER5B DNA MER1_type 11 157 -21 628 252 102 19 chr1 157574872 157575078 -85089275 - MIR SINE MIR -2 260 38 253 220 0 0 chr1 157576316 157576366 -85087987 + L2 LINE L2 2709 2758 -556 1486 183 39 32 chr1 157576401 157576680 -85087673 + AluJo SINE Alu 3 283 -29 258 32 0 0 chr1 157576685 157576716 -85087637 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 361 236 47 24 chr1 157577069 157577196 -85087157 + L2 LINE L2 3180 3309 -4 433 256 6 73 chr1 157577395 157577559 -85086794 + MER5A DNA MER1_type 2 154 -35 360 209 124 38 chr1 157579864 157579969 -85084384 + LTR8 LTR ERV1 1 114 -577 727 215 92 42 chr1 157580043 157580344 -85084009 + LTR8A LTR ERV1 116 511 -180 267 79 0 0 chr1 157580544 157580582 -85083771 + (TG)n Simple_repeat Simple_repeat 1 38 0 271 230 92 58 chr1 157581359 157581446 -85082907 + L2 LINE L2 3208 3297 -16 2085 127 3 7 chr1 157581582 157581890 -85082463 - AluSx SINE Alu -3 309 3 2070 164 111 36 chr1 157581901 157582371 -85081982 - L1MB8 LINE L1 -1 6177 5673 210 279 81 45 chr1 157582371 157582482 -85081871 - MIR SINE MIR -99 163 49 2011 108 6 51 chr1 157584214 157584528 -85079825 - AluSx SINE Alu 0 312 13 273 293 134 59 chr1 157584764 157585122 -85079231 + L2 LINE L2 2197 2581 -733 26 0 0 0 chr1 157585493 157585519 -85078834 + AT_rich Low_complexity Low_complexity 1 26 0 1458 83 5 0 chr1 157585542 157585735 -85078618 + AluY SINE Alu 111 304 -7 2443 64 3 0 chr1 157586021 157586318 -85078035 + AluY SINE Alu 1 298 -13 2256 94 17 0 chr1 157586425 157586723 -85077630 + AluSx SINE Alu 1 303 -9 14397 183 40 65 chr1 157587284 157587501 -85076852 - L1MA5A LINE L1 -5 6934 6713 2549 120 120 0 chr1 157587501 157587883 -85076470 - MSTA LTR MaLR 0 428 1 14397 183 40 65 chr1 157587883 157588187 -85076166 - L1MA5A LINE L1 -226 6713 6403 1982 122 52 3 chr1 157588187 157588474 -85075879 - AluSx SINE Alu -11 301 1 14397 183 40 65 chr1 157588474 157588768 -85075585 - L1MA5A LINE L1 -536 6403 6103 195 42 0 0 chr1 157588768 157588792 -85075561 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 14397 183 40 65 chr1 157588792 157589499 -85074854 - L1MA5A LINE L1 -836 6103 5380 381 155 6 18 chr1 157589499 157589581 -85074772 - Alu SINE Alu -1 300 234 263 132 0 0 chr1 157589556 157589594 -85074759 - Alu SINE Alu -264 38 1 * 14397 183 40 65 chr1 157589594 157590165 -85074188 - L1MA5A LINE L1 -1572 5367 4783 349 121 0 17 chr1 157590165 157590223 -85074130 - HY3 scRNA scRNA -2 99 43 14397 183 40 65 chr1 157590223 157591278 -85073075 - L1MA5A LINE L1 -2156 4783 3704 895 163 0 0 chr1 157591278 157591407 -85072946 + FLAM_C SINE Alu 5 133 0 14397 183 40 65 chr1 157591407 157591696 -85072657 - L1MA5A LINE L1 -3235 3704 3409 2596 64 0 0 chr1 157591696 157592007 -85072346 - AluY SINE Alu 0 311 1 14397 183 40 65 chr1 157592007 157594728 -85069625 - L1MA5A LINE L1 -3530 3409 129 247 250 14 0 chr1 157594773 157594845 -85069508 - L1MA5A LINE L1 -6588 201 129 277 236 14 0 chr1 157594851 157594923 -85069430 - L1MA5A LINE L1 -6588 201 129 277 236 14 0 chr1 157594929 157595001 -85069352 - L1MA5A LINE L1 -6588 201 129 921 199 42 0 chr1 157595007 157595173 -85069180 - L1MA5A LINE L1 -6588 201 29 1966 150 3 0 chr1 157595936 157596236 -85068117 - AluSx SINE Alu -11 301 1 1530 199 21 7 chr1 157596533 157596824 -85067529 + AluJb SINE Alu 6 300 -12 1175 144 0 0 chr1 157597268 157597442 -85066911 - FRAM SINE Alu -8 168 1 402 330 70 5 chr1 157597556 157597741 -85066612 - L2 LINE L2 -605 2709 2513 389 328 132 44 chr1 157598137 157598659 -85065694 + L2 LINE L2 157 724 -2590 245 306 0 0 chr1 157598873 157598935 -85065418 + MIR SINE MIR 201 262 0 473 262 16 78 chr1 157599149 157599340 -85065013 - MER5A DNA MER1_type -7 182 4 571 254 99 22 chr1 157599380 157599612 -85064741 - MIR SINE MIR 0 262 13 378 74 0 0 chr1 157599628 157599674 -85064679 - MLT2A1 LTR ERVL 0 453 405 261 0 0 0 chr1 157599674 157599703 -85064650 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 189 0 0 chr1 157599739 157599792 -85064561 + (TA)n Simple_repeat Simple_repeat 2 54 0 2891 72 80 10 chr1 157599792 157600193 -85064160 - MLT2A1 LTR ERVL -15 429 1 1608 132 24 108 chr1 157600212 157600545 -85063808 - AluYb8 SINE Alu -5 313 9 204 158 0 0 chr1 157600669 157600707 -85063646 + CT-rich Low_complexity Low_complexity 5 42 0 1556 91 39 43 chr1 157601310 157601541 -85062812 - MER30 DNA MER1_type 0 230 1 1165 80 0 25 chr1 157601675 157601837 -85062516 - AluY SINE Alu -10 301 144 2107 108 0 41 chr1 157601974 157602288 -85062065 - AluSx SINE Alu -11 301 1 470 96 14 0 chr1 157602341 157602414 -85061939 + (TA)n Simple_repeat Simple_repeat 2 75 0 2380 96 0 3 chr1 157603003 157603305 -85061048 - AluSx SINE Alu -11 301 1 237 237 17 17 chr1 157603523 157603582 -85060771 + MLT1K LTR MaLR 191 249 -339 240 267 0 0 chr1 157603923 157603983 -85060370 + MLT1K LTR MaLR 525 584 -4 2037 125 3 22 chr1 157604175 157604487 -85059866 - AluSg SINE Alu -4 306 1 1723 160 20 29 chr1 157604804 157605110 -85059243 + AluJo SINE Alu 1 303 -9 586 293 30 6 chr1 157605799 157605966 -85058387 + L3 LINE CR1 1269 1439 -138 869 271 55 103 chr1 157606075 157606282 -85058071 + L2 LINE L2 2850 3065 -248 2174 87 0 0 chr1 157606282 157606559 -85057794 - AluSg SINE Alu -6 304 28 869 271 55 103 chr1 157606559 157606838 -85057515 + L2 LINE L2 3065 3313 0 23 0 0 0 chr1 157607213 157607236 -85057117 + AT_rich Low_complexity Low_complexity 1 23 0 5127 99 28 28 chr1 157607480 157607538 -85056815 + L1MA3 LINE L1 5550 5607 -698 1700 157 13 44 chr1 157607538 157607856 -85056497 + AluJo SINE Alu 1 308 -4 5127 99 28 28 chr1 157607856 157608044 -85056309 + L1MA3 LINE L1 5607 5794 -511 2528 68 0 10 chr1 157608044 157608354 -85055999 + AluSg SINE Alu 1 307 -3 5127 99 28 28 chr1 157608354 157608694 -85055659 + L1MA3 LINE L1 5794 6140 -165 2260 80 0 0 chr1 157608694 157608968 -85055385 + AluSg SINE Alu 19 292 -18 5127 99 28 28 chr1 157608968 157609135 -85055218 + L1MA3 LINE L1 6139 6305 0 24 32 0 0 chr1 157609135 157609166 -85055187 + AT_rich Low_complexity Low_complexity 1 31 0 1323 107 48 79 chr1 157609185 157609381 -85054972 + MER49 LTR ERV1 51 252 -671 2408 92 0 0 chr1 157609381 157609686 -85054667 + AluSg SINE Alu 1 305 -5 1323 107 48 79 chr1 157609686 157609697 -85054656 + MER49 LTR ERV1 252 262 -661 2226 90 0 0 chr1 157609697 157610006 -85054347 + AluSg SINE Alu 1 309 0 1323 107 48 79 chr1 157610006 157610048 -85054305 + MER49 LTR ERV1 262 294 -629 437 144 41 28 chr1 157610034 157610148 -85054205 + MER4E LTR ERV1 62 284 -588 * 1591 192 30 57 chr1 157610144 157610204 -85054149 + MER4D LTR ERV1 544 604 -299 1994 141 0 0 chr1 157610204 157610516 -85053837 - AluSx SINE Alu 0 312 1 1377 196 45 7 chr1 157610520 157610806 -85053547 - AluJo SINE Alu -15 297 1 1591 192 30 57 chr1 157610806 157611109 -85053244 + MER4D LTR ERV1 607 903 0 230 211 97 74 chr1 157611110 157611217 -85053136 - MIR SINE MIR -57 151 40 253 250 155 12 chr1 157612351 157612435 -85051918 - L2 LINE L2 -41 3231 3136 512 311 174 36 chr1 157612656 157613428 -85050925 - L2 LINE L2 -359 2955 2078 237 184 202 37 chr1 157613491 157613600 -85050753 - L1ME4a LINE L1 -31 6090 5964 1034 98 0 0 chr1 157613626 157613759 -85050594 - AluSp SINE Alu -180 133 1 1360 120 0 0 chr1 157613768 157613959 -85050394 - AluSg/x SINE Alu -2 310 120 23 0 0 0 chr1 157613959 157613982 -85050371 + AT_rich Low_complexity Low_complexity 1 23 0 2270 96 10 13 chr1 157613994 157614307 -85050046 - AluSx SINE Alu 0 312 1 438 47 203 0 chr1 157614340 157614404 -85049949 + MADE1 DNA Mariner 4 80 0 25 0 0 0 chr1 157614407 157614432 -85049921 + AT_rich Low_complexity Low_complexity 1 25 0 876 230 182 56 chr1 157614433 157614574 -85049779 + Charlie2a DNA MER1_type 1 123 -2659 2012 116 0 48 chr1 157614574 157614884 -85049469 + AluSx SINE Alu 1 295 -17 876 230 182 56 chr1 157614884 157615137 -85049216 + Charlie2a DNA MER1_type 123 445 -2337 2410 86 0 0 chr1 157615139 157615431 -85048922 + AluSx SINE Alu 1 292 -20 1031 186 103 8 chr1 157615465 157615728 -85048625 + Charlie2a DNA MER1_type 728 1015 -1847 470 303 52 29 chr1 157615847 157616154 -85048199 - L1ME4a LINE L1 -200 5921 5608 180 324 117 9 chr1 157617271 157617382 -85046971 - L2 LINE L2 -10 3303 3181 255 266 133 0 chr1 157618106 157618219 -85046134 + MIR SINE MIR 86 213 -49 2326 91 3 0 chr1 157618286 157618583 -85045770 + AluSg SINE Alu 1 298 -12 2527 84 0 0 chr1 157618590 157618899 -85045454 + AluSg SINE Alu 1 309 -1 2126 145 0 0 chr1 157619009 157619319 -85045034 + AluSx SINE Alu 1 310 -2 819 127 5 4 chr1 157619437 157619640 -85044713 + AluSx SINE Alu 3 294 -18 490 172 147 17 chr1 157619838 157619954 -85044399 - L2 LINE L2 0 3313 3183 294 273 204 42 chr1 157620321 157620490 -85043863 + MIR SINE MIR 12 225 -37 1985 132 18 0 chr1 157620490 157620771 -85043582 + AluJb SINE Alu 1 286 -26 294 273 204 42 chr1 157620771 157620817 -85043536 + MIR SINE MIR 225 262 0 259 250 0 0 chr1 157621044 157621104 -85043249 - L1MEd LINE L1 -5472 647 588 1503 204 70 6 chr1 157621122 157621435 -85042918 - MER58B DNA MER1_type 0 341 9 2025 140 3 7 chr1 157621493 157621793 -85042560 + AluSx SINE Alu 1 299 -13 2289 105 3 0 chr1 157622144 157622440 -85041913 - AluSq SINE Alu -16 297 1 29 0 0 0 chr1 157624301 157624330 -85040023 + AT_rich Low_complexity Low_complexity 1 29 0 2298 61 44 3 chr1 157624385 157624679 -85039674 + AluY SINE Alu 1 306 -5 1117 33 13 53 chr1 157625002 157625176 -85039177 + AluY SINE Alu 141 308 0 2238 37 48 0 chr1 157625412 157625713 -85038640 + AluY SINE Alu 1 314 0 718 130 0 0 chr1 157625868 157625968 -85038385 + FRAM SINE Alu 32 131 -45 37 52 0 0 chr1 157625968 157626026 -85038327 + AT_rich Low_complexity Low_complexity 1 58 0 180 345 185 17 chr1 157626036 157626155 -85038198 - MIR3 SINE MIR -6 202 64 1880 268 128 6 chr1 157626564 157627190 -85037163 - MER20B DNA MER1_type -65 718 17 790 353 75 20 chr1 157627562 157627910 -85036443 - L2 LINE L2 -1 3271 2905 1750 164 7 4 chr1 157628384 157628664 -85035689 - AluJb SINE Alu -26 286 6 27 29 0 0 chr1 157629286 157629320 -85035033 + AT_rich Low_complexity Low_complexity 1 34 0 1594 120 124 22 chr1 157629827 157630101 -85034252 + AluSg SINE Alu 1 302 -8 266 245 20 0 chr1 157630103 157630152 -85034201 - MIR SINE MIR -165 97 48 1995 110 3 44 chr1 157630307 157630624 -85033729 - AluSx SINE Alu -8 304 1 399 259 41 119 chr1 157630625 157630968 -85033385 + L1ME4a LINE L1 5603 5918 -203 337 333 61 0 chr1 157631964 157632078 -85032275 - MIR3 SINE MIR -21 187 67 22 0 0 0 chr1 157633398 157633420 -85030933 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr1 157634411 157634436 -85029917 + (CA)n Simple_repeat Simple_repeat 2 26 0 324 0 0 0 chr1 157634566 157634602 -85029751 + (TG)n Simple_repeat Simple_repeat 2 37 0 2959 269 104 42 chr1 157635417 157636634 -85027719 + L1MCc LINE L1 17 1157 -5481 2156 154 71 17 chr1 157636634 157636854 -85027499 - MSTB1 LTR MaLR 0 432 225 2192 106 0 0 chr1 157636854 157637175 -85027178 - AluSx SINE Alu 0 321 1 2156 154 71 17 chr1 157637175 157637362 -85026991 - MSTB1 LTR MaLR -207 225 1 2959 269 104 42 chr1 157637362 157637633 -85026720 + L1MCc LINE L1 1157 1410 -5228 2161 124 0 3 chr1 157637633 157637931 -85026422 + AluSx SINE Alu 1 297 -15 2959 269 104 42 chr1 157637931 157638086 -85026267 + L1MCc LINE L1 1410 1744 -4894 1682 142 108 9 chr1 157638105 157638429 -85025924 - Tigger1 DNA MER2_type 0 2418 2063 2381 93 3 0 chr1 157638430 157638730 -85025623 + AluSp SINE Alu 1 301 -12 5039 99 31 17 chr1 157638735 157639544 -85024809 - Tigger1 DNA MER2_type -465 1953 1134 1535 108 68 0 chr1 157639543 157639794 -85024559 - Tigger1 DNA MER2_type -1738 680 413 * 311 60 20 0 chr1 157639929 157639979 -85024374 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 10697 37 9 79 chr1 157639979 157641452 -85022901 - SVA Other Other -17 1369 1 1315 158 8 4 chr1 157641452 157641686 -85022667 - Tigger1 DNA MER2_type -1990 428 194 286 270 7 95 chr1 157641740 157641802 -85022551 + L1MCc LINE L1 1964 2030 -5092 2531 56 0 31 chr1 157641802 157642121 -85022232 + AluSc SINE Alu 1 309 0 286 270 7 95 chr1 157642121 157642206 -85022147 + L1MCc LINE L1 2030 2098 -5024 249 262 14 35 chr1 157642215 157642360 -85021993 + L1MCc LINE L1 1956 2097 -4844 3579 164 18 18 chr1 157642364 157642653 -85021700 + L1MCa LINE L1 41 329 -6097 2177 145 3 0 chr1 157642653 157642964 -85021389 + AluSx SINE Alu 1 312 0 3579 164 18 18 chr1 157642964 157643344 -85021009 + L1MCa LINE L1 328 710 -5716 2231 93 41 0 chr1 157643779 157644070 -85020283 + AluSg SINE Alu 2 304 -6 2800 147 24 39 chr1 157644104 157644695 -85019658 + L1MCa LINE L1 689 1270 -5156 2355 107 0 0 chr1 157644695 157645005 -85019348 + AluSx SINE Alu 1 310 -2 665 125 0 0 chr1 157645042 157645138 -85019215 + AluSg/x SINE Alu 211 306 -6 1735 142 38 36 chr1 157645138 157645680 -85018673 + L1MCa LINE L1 1262 1895 -4531 635 39 26 58 chr1 157645680 157645834 -85018519 + (TCTA)n Simple_repeat Simple_repeat 1 149 0 298 297 0 0 chr1 157645844 157645918 -85018435 + (CCTA)n Simple_repeat Simple_repeat 2 75 0 1849 219 4 59 chr1 157645918 157646407 -85017946 - MLT2B1 LTR ERVL -58 462 1 746 237 71 0 chr1 157646407 157646631 -85017722 + L1ME1 LINE L1 5922 6161 -5 1646 169 4 4 chr1 157646685 157646957 -85017396 + AluJo SINE Alu 1 272 -40 25 0 0 0 chr1 157646968 157646993 -85017360 + AT_rich Low_complexity Low_complexity 1 25 0 1128 318 62 52 chr1 157647175 157647713 -85016640 - L2 LINE L2 -470 2844 2296 2296 119 3 0 chr1 157647713 157648024 -85016329 - AluSx SINE Alu 0 312 1 1128 318 62 52 chr1 157648024 157648178 -85016175 - L2 LINE L2 -1018 2296 2145 231 183 0 0 chr1 157648603 157648629 -85015724 + A-rich Low_complexity Low_complexity 1 26 -34 2420 74 0 6 chr1 157648629 157648941 -85015412 + AluY SINE Alu 1 310 -1 231 183 0 0 chr1 157648941 157648974 -85015379 + A-rich Low_complexity Low_complexity 25 60 0 303 225 87 65 chr1 157649024 157649162 -85015191 - L2 LINE L2 -1232 2082 1942 1262 159 0 14 chr1 157649198 157649406 -85014947 - AluJb SINE Alu -12 300 96 442 171 219 68 chr1 157649507 157649653 -85014700 - MLT1F LTR MaLR -205 337 170 242 247 71 24 chr1 157650317 157650402 -85013951 + MER81 DNA DNA 26 114 0 408 192 158 17 chr1 157652418 157652538 -85011815 + MIR SINE MIR 53 189 -73 2134 93 16 42 chr1 157652764 157653075 -85011278 - AluY SINE Alu -8 303 1 210 303 20 99 chr1 157653470 157653622 -85010731 + L2 LINE L2 3158 3297 -16 312 318 42 47 chr1 157653773 157653965 -85010388 - MIR SINE MIR -70 192 2 8838 116 29 7 chr1 157655885 157658075 -85006278 - L1PA8 LINE L1 -3 6169 3947 4700 199 20 23 chr1 157658176 157660197 -85004156 + L1MB3 LINE L1 4171 6182 -1 241 371 0 0 chr1 157660737 157660807 -85003546 + L2 LINE L2 3244 3313 0 1756 192 17 62 chr1 157660948 157661370 -85002983 - MER57A LTR ERV1 0 403 1 21 36 0 0 chr1 157661375 157661403 -85002950 + AT_rich Low_complexity Low_complexity 1 28 0 242 347 42 0 chr1 157661640 157661735 -85002618 + MIR SINE MIR 23 121 -87 348 215 13 0 chr1 157662361 157662440 -85001913 - MLT1K LTR MaLR -4 584 505 423 336 14 0 chr1 157662460 157662600 -85001753 + MER63A DNA MER1_type 63 204 -6 183 369 62 0 chr1 157662607 157662672 -85001681 - L2 LINE L2 -35 3237 3169 923 289 25 0 chr1 157662811 157663046 -85001307 + MIR SINE MIR 19 259 -3 255 258 122 56 chr1 157663071 157663214 -85001139 - MIR SINE MIR -72 136 31 381 369 84 9 chr1 157663252 157663477 -85000876 - MIR SINE MIR -14 248 7 510 360 94 18 chr1 157663705 157664141 -85000212 - L2 LINE L2 -337 2977 2509 411 290 207 0 chr1 157664262 157664407 -84999946 - MIR SINE MIR -25 237 63 770 307 68 41 chr1 157664444 157664838 -84999515 + L2 LINE L2 2573 2977 -337 1091 198 9 0 chr1 157664913 157665145 -84999208 - MER96B DNA MER1_type? -183 234 1 362 250 66 52 chr1 157665146 157665282 -84999071 + L2 LINE L2 3176 3313 0 515 289 41 46 chr1 157665309 157665503 -84998850 - MIR SINE MIR -56 206 14 371 288 65 36 chr1 157665506 157665645 -84998708 + L3 LINE CR1 1434 1576 -1 272 336 60 8 chr1 157665685 157665819 -84998534 + MIR SINE MIR 120 260 -2 191 318 30 30 chr1 157666473 157666539 -84997814 + L2 LINE L2 3205 3270 -2 189 0 0 0 chr1 157666728 157666749 -84997604 + (CA)n Simple_repeat Simple_repeat 1 21 0 1309 154 50 0 chr1 157667049 157667269 -84997084 - MER46A DNA MER2_type -1 235 5 246 169 0 84 chr1 157667688 157667771 -84996582 + MLT1H LTR MaLR 15 90 -459 4792 102 28 81 chr1 157668003 157668876 -84995477 + LTR12 LTR ERV1 1 826 0 1514 139 14 57 chr1 157668892 157669173 -84995180 - MER1B DNA MER1_type -9 330 62 213 300 0 0 chr1 157669210 157669260 -84995093 - MIR SINE MIR -2 260 211 321 175 0 0 chr1 157669260 157669317 -84995036 - MER1B DNA MER1_type -280 57 1 381 286 16 24 chr1 157669350 157669476 -84994877 + MLT1H LTR MaLR 398 522 -27 542 363 118 12 chr1 157669775 157670345 -84994008 + L2 LINE L2 1253 1882 -1432 302 343 46 42 chr1 157670568 157670807 -84993546 + L1ME3 LINE L1 3328 3567 -2579 460 305 43 29 chr1 157670848 157671058 -84993295 + L1ME3 LINE L1 3674 3886 -2260 493 325 140 4 chr1 157671072 157671300 -84993053 - MIR SINE MIR -2 260 2 310 323 73 35 chr1 157671310 157671651 -84992702 + L1ME3 LINE L1 3895 4248 -1898 571 211 23 8 chr1 157671747 157671880 -84992473 + MLT1H LTR MaLR 415 549 0 827 345 30 28 chr1 157671887 157672424 -84991929 + L1ME3 LINE L1 4860 5397 -749 399 189 8 57 chr1 157672424 157672549 -84991804 + L1MC1 LINE L1 6155 6265 -68 373 290 117 67 chr1 157672638 157673134 -84991219 + L1ME3 LINE L1 5364 5884 -278 236 276 35 0 chr1 157673452 157673510 -84990843 + L2 LINE L2 3199 3258 -14 5688 114 3 3 chr1 157674228 157675125 -84989228 - L1PB1 LINE L1 0 6151 5255 200 326 11 45 chr1 157676468 157676557 -84987796 - L2 LINE L2 -1 3271 3186 545 264 119 25 chr1 157676819 157677020 -84987333 + MIR SINE MIR 12 231 -31 180 355 100 31 chr1 157677247 157677638 -84986715 - L2 LINE L2 -655 2659 2242 205 29 29 29 chr1 157678904 157678939 -84985414 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 676 196 45 34 chr1 157679620 157679799 -84984554 + MER53 DNA DNA 1 181 -8 390 294 8 0 chr1 157680181 157680300 -84984053 - MER103 DNA DNA -45 121 2 21 0 0 0 chr1 157681101 157681122 -84983231 + AT_rich Low_complexity Low_complexity 1 21 0 250 341 11 0 chr1 157682438 157682526 -84981827 - MIR SINE MIR -110 152 64 817 244 10 5 chr1 157682961 157683158 -84981195 + MLT1F1 LTR MaLR 370 567 0 209 346 93 40 chr1 157683180 157683533 -84980820 + L2 LINE L2 1442 1813 -1501 298 332 139 9 chr1 157683566 157683789 -84980564 + L2 LINE L2 2249 2500 -814 2369 43 0 33 chr1 157683922 157684253 -84980100 - AluY SINE Alu 0 311 1 348 218 0 39 chr1 157684463 157684541 -84979812 + L2 LINE L2 3227 3301 -12 613 233 161 5 chr1 157684601 157684794 -84979559 - MLT1D LTR MaLR -4 501 279 256 254 0 0 chr1 157684794 157684849 -84979504 - MLT1-int LTR MaLR -358 1013 959 2023 208 174 85 chr1 157685054 157685857 -84978496 - MLT1-int LTR MaLR -489 882 8 1121 199 78 59 chr1 157685987 157686184 -84978169 - MLT2C1 LTR ERVL -48 349 142 1969 157 0 0 chr1 157686184 157686471 -84977882 - AluSx SINE Alu -25 287 1 1121 199 78 59 chr1 157686471 157686579 -84977774 - MLT2C1 LTR ERVL -255 142 38 1949 205 55 9 chr1 157686582 157686622 -84977731 - MLT2B1 LTR ERVL 0 520 483 414 0 0 0 chr1 157686622 157686668 -84977685 + (TA)n Simple_repeat Simple_repeat 2 47 0 1949 205 55 9 chr1 157686668 157687047 -84977306 - MLT2B1 LTR ERVL -37 483 82 230 319 77 11 chr1 157688907 157688998 -84975355 - L3 LINE CR1 -3 1574 1478 326 300 0 0 chr1 157689089 157689179 -84975174 - MIR SINE MIR -79 183 94 906 114 8 0 chr1 157689487 157689618 -84974735 + FLAM_C SINE Alu 11 142 -1 3600 140 11 6 chr1 157689959 157690581 -84973772 - L1MA6 LINE L1 -8 6292 5668 11802 125 10 14 chr1 157690581 157692541 -84971812 - Tigger1 DNA MER2_type -1 2417 466 16657 29 2 0 chr1 157692541 157695286 -84969067 + L1PA3 LINE L1 3409 6155 0 1609 128 80 62 chr1 157695402 157695690 -84968663 + AluJo SINE Alu 1 293 -19 1028 105 0 0 chr1 157695835 157695978 -84968375 + AluSq/x SINE Alu 1 143 -169 2109 75 4 0 chr1 157696392 157696673 -84967680 + L1PA7 LINE L1 5873 6154 0 2047 49 0 30 chr1 157698231 157698494 -84965859 - AluY SINE Alu -4 307 53 331 237 31 10 chr1 157698758 157698855 -84965498 - MIR3 SINE MIR -1 207 109 1647 174 7 24 chr1 157698879 157699166 -84965187 + AluJo SINE Alu 1 282 -30 238 245 0 0 chr1 157699201 157699250 -84965103 - L2 LINE L2 0 3313 3265 232 226 188 8 chr1 157699508 157699641 -84964712 - MER103 DNA DNA -7 159 3 219 227 0 0 chr1 157699673 157699717 -84964636 + CT-rich Low_complexity Low_complexity 3 46 0 820 262 124 62 chr1 157700275 157700741 -84963612 + L2 LINE L2 2818 3312 -1 217 315 19 46 chr1 157701712 157701820 -84962533 + MIR SINE MIR 1 105 -157 467 260 59 83 chr1 157701989 157702243 -84962110 - L2 LINE L2 -25 3288 3041 306 341 48 36 chr1 157702493 157702660 -84961693 + L2 LINE L2 2509 2677 -637 250 236 14 0 chr1 157702963 157703035 -84961318 + LTR33A LTR ERVL 450 522 -1 2460 71 0 3 chr1 157704518 157704827 -84959526 - AluY SINE Alu -3 308 1 209 313 37 86 chr1 157705524 157705687 -84958666 + L3 LINE CR1 1377 1531 -46 239 312 55 37 chr1 157705852 157705961 -84958392 + MIR SINE MIR 34 144 -64 718 247 114 62 chr1 157706409 157706717 -84957636 + L2 LINE L2 2989 3312 -1 296 300 50 8 chr1 157708117 157708237 -84956116 + MIR SINE MIR 29 153 -55 210 354 103 11 chr1 157708456 157708631 -84955722 + L2 LINE L2 2922 3112 -160 15543 119 21 6 chr1 157709047 157711430 -84952923 - Tigger1 DNA MER2_type 0 2418 2 1155 285 46 81 chr1 157711435 157712175 -84952178 - MER21B LTR ERV1 -149 714 1 368 288 93 7 chr1 157712186 157712325 -84952028 - MIR SINE MIR -109 153 3 194 191 24 24 chr1 157712696 157712780 -84951573 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 208 324 0 28 chr1 157712914 157712985 -84951368 + C-rich Low_complexity Low_complexity 2 70 0 586 276 112 14 chr1 157713045 157713259 -84951094 - MIR SINE MIR -26 236 2 191 375 10 0 chr1 157713295 157713391 -84950962 + MIR SINE MIR 49 145 -117 220 313 71 36 chr1 157714174 157714286 -84950067 + L2 LINE L2 3154 3269 -3 281 275 109 36 chr1 157714450 157714588 -84949765 + MIR SINE MIR 3 150 -112 337 313 134 30 chr1 157714591 157714725 -84949628 - MER91A DNA MER1_type 0 196 49 652 315 43 16 chr1 157715906 157716160 -84948193 + MIR SINE MIR 2 262 0 349 292 0 0 chr1 157716417 157716506 -84947847 + MIR3 SINE MIR 119 207 -1 225 94 0 0 chr1 157718019 157718051 -84946302 + (CA)n Simple_repeat Simple_repeat 2 33 0 301 345 142 18 chr1 157720092 157720367 -84943986 + L2 LINE L2 3005 3313 0 227 259 37 74 chr1 157720599 157720734 -84943619 - MIR SINE MIR -45 217 88 481 272 64 8 chr1 157720957 157721082 -84943271 - MIR3 SINE MIR -21 187 56 215 331 119 25 chr1 157721118 157721278 -84943075 - MIR SINE MIR -78 184 10 478 283 75 13 chr1 157721746 157721905 -84942448 - MIR SINE MIR -80 182 14 207 0 0 0 chr1 157723001 157723024 -84941329 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 252 225 125 0 chr1 157723048 157723128 -84941225 + L2 LINE L2 3137 3226 -46 1047 258 157 26 chr1 157723542 157723968 -84940385 + L2 LINE L2 1382 1863 -1451 192 80 0 0 chr1 157724028 157724053 -84940300 + L2 LINE L2 1879 1903 -1411 353 281 0 65 chr1 157724054 157724193 -84940160 - MER94 DNA DNA 0 134 5 1088 254 214 36 chr1 157724197 157724972 -84939381 + L2 LINE L2 2403 3313 0 306 206 0 0 chr1 157725148 157725216 -84939137 - L1PB4 LINE L1 -5 6151 6084 397 266 166 30 chr1 157725264 157725602 -84938751 + L1ME4a LINE L1 5736 6119 -2 529 254 99 22 chr1 157726769 157727001 -84937352 - L1ME3 LINE L1 -225 5937 5688 232 207 52 0 chr1 157727197 157727255 -84937098 - MER69 DNA AcHobo -1158 68 8 761 275 95 33 chr1 157728190 157729064 -84935289 - L1ME3 LINE L1 -459 5703 4756 21 36 0 0 chr1 157731440 157731468 -84932885 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr1 157731740 157731771 -84932582 + AT_rich Low_complexity Low_complexity 1 31 0 455 365 50 59 chr1 157731817 157732374 -84931979 + L1MEd LINE L1 9 560 -5559 360 94 0 0 chr1 157732575 157732628 -84931725 + (GA)n Simple_repeat Simple_repeat 2 54 0 2201 123 3 13 chr1 157732743 157733052 -84931301 + AluSx SINE Alu 1 306 -6 853 284 39 35 chr1 157733121 157733600 -84930753 + L1MEd LINE L1 948 1522 -968 1735 163 121 16 chr1 157733600 157733784 -84930569 - MSTA LTR MaLR 0 428 265 261 0 0 0 chr1 157733784 157733813 -84930540 + (GA)n Simple_repeat Simple_repeat 1 29 0 1735 163 121 16 chr1 157733813 157734015 -84930338 - MSTA LTR MaLR -163 265 1 853 284 39 35 chr1 157734015 157734137 -84930216 + L1MEd LINE L1 1522 1642 -848 2100 205 41 0 chr1 157734507 157734995 -84929358 + L1ME1 LINE L1 5318 5825 -341 1509 89 17 21 chr1 157734995 157735232 -84929121 + L1PA8 LINE L1 5937 6172 0 302 282 8 53 chr1 157735272 157735403 -84928950 + L1MC5 LINE L1 7609 7733 -228 739 209 74 71 chr1 157735408 157735466 -84928887 + L1ME1 LINE L1 5811 5867 -299 2141 63 3 70 chr1 157735466 157735791 -84928562 + AluY SINE Alu 1 305 0 739 209 74 71 chr1 157735791 157736081 -84928272 + L1ME1 LINE L1 5867 6161 -5 244 297 88 11 chr1 157736341 157736432 -84927921 - MER58 DNA MER1_type -2147 273 176 321 242 92 33 chr1 157736547 157736667 -84927686 + L1ME4a LINE L1 2176 2302 -3827 264 341 45 0 chr1 157736730 157736818 -84927535 - MIR SINE MIR -168 94 3 333 0 0 0 chr1 157736988 157737025 -84927328 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chr1 157737192 157737224 -84927129 + AT_rich Low_complexity Low_complexity 1 32 0 962 243 8 53 chr1 157737317 157737580 -84926773 + MIR SINE MIR 1 251 -11 439 326 175 11 chr1 157737609 157737980 -84926373 + L1ME4a LINE L1 4448 4879 -1250 410 300 70 13 chr1 157738001 157738231 -84926122 + MER112 DNA MER1_type 12 254 -6 2229 119 0 0 chr1 157738483 157738778 -84925575 + AluSx SINE Alu 1 295 -17 761 262 41 17 chr1 157738788 157739078 -84925275 + L1ME4a LINE L1 5238 5534 -615 321 303 76 8 chr1 157739815 157739934 -84924419 - L2 LINE L2 -5 3308 3182 599 261 14 112 chr1 157740230 157740445 -84923908 + MER91A DNA MER1_type 2 195 -1 496 252 184 14 chr1 157740656 157740803 -84923550 - MIR3 SINE MIR -16 192 21 398 317 45 40 chr1 157741508 157741707 -84922646 + MIR SINE MIR 24 223 -39 481 346 122 13 chr1 157742563 157742800 -84921553 - L3 LINE CR1 -3 1574 1312 519 282 51 26 chr1 157743082 157743277 -84921076 - L2 LINE L2 -19 3294 3095 251 248 26 43 chr1 157743295 157743412 -84920941 - L1M4 LINE L1 -988 5158 5044 403 183 0 29 chr1 157743420 157743524 -84920829 + CT-rich Low_complexity Low_complexity 2 102 0 226 281 16 0 chr1 157743662 157743726 -84920627 + (TA)n Simple_repeat Simple_repeat 1 65 0 400 320 20 30 chr1 157743727 157744027 -84920326 - L1M4 LINE L1 -1332 4814 4518 502 344 167 5 chr1 157744290 157744505 -84919848 + MIR SINE MIR 13 262 0 2015 259 56 61 chr1 157745670 157746454 -84917899 + L2 LINE L2 1641 2420 -894 7403 43 1 40 chr1 157746457 157747455 -84916898 - L1P LINE L1 -3028 3118 2160 * 12186 56 5 2 chr1 157747446 157749016 -84915337 - L1P LINE L1 -1430 4716 3143 3391 71 2 36 chr1 157749017 157749521 -84914832 + L1P LINE L1 4660 5146 -1000 343 215 0 84 chr1 157799524 157799631 -84864722 - MER94 DNA DNA -32 102 5 1088 254 214 36 chr1 157799635 157800410 -84863943 + L2 LINE L2 2403 3313 0 306 206 0 0 chr1 157800586 157800654 -84863699 - L1PB4 LINE L1 -5 6151 6084 397 266 166 30 chr1 157800702 157801040 -84863313 + L1ME4a LINE L1 5719 6102 -2 529 254 99 22 chr1 157802207 157802439 -84861914 - L1ME3 LINE L1 -225 5937 5688 232 207 52 0 chr1 157802635 157802693 -84861660 - MER69 DNA AcHobo -1158 68 8 761 275 95 33 chr1 157803635 157804509 -84859844 - L1ME3 LINE L1 -459 5703 4756 21 36 0 0 chr1 157806885 157806913 -84857440 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr1 157807185 157807216 -84857137 + AT_rich Low_complexity Low_complexity 1 31 0 455 365 50 59 chr1 157807262 157807819 -84856534 + L1MEd LINE L1 9 560 -5559 360 94 0 0 chr1 157808018 157808071 -84856282 + (GA)n Simple_repeat Simple_repeat 2 54 0 2201 123 3 13 chr1 157808186 157808495 -84855858 + AluSx SINE Alu 1 306 -6 853 284 39 35 chr1 157808564 157809043 -84855310 + L1MEd LINE L1 948 1522 -968 1735 163 121 16 chr1 157809043 157809227 -84855126 - MSTA LTR MaLR 0 428 265 261 0 0 0 chr1 157809227 157809256 -84855097 + (GA)n Simple_repeat Simple_repeat 1 29 0 1735 163 121 16 chr1 157809256 157809458 -84854895 - MSTA LTR MaLR -163 265 1 853 284 39 35 chr1 157809458 157809580 -84854773 + L1MEd LINE L1 1522 1642 -848 2100 205 41 0 chr1 157809950 157810438 -84853915 + L1ME1 LINE L1 5318 5825 -341 1509 89 17 21 chr1 157810438 157810675 -84853678 + L1PA8 LINE L1 5937 6172 0 302 282 8 53 chr1 157810715 157810846 -84853507 + L1MC5 LINE L1 7609 7733 -228 739 209 74 71 chr1 157810851 157810909 -84853444 + L1ME1 LINE L1 5811 5867 -299 2172 60 3 70 chr1 157810909 157811234 -84853119 + AluY SINE Alu 1 305 0 739 209 74 71 chr1 157811234 157811524 -84852829 + L1ME1 LINE L1 5867 6161 -5 295 123 35 18 chr1 157811722 157811779 -84852574 - MER58 DNA MER1_type -2 2418 2361 244 297 88 11 chr1 157811784 157811875 -84852478 - MER58 DNA MER1_type -2147 273 176 321 242 92 33 chr1 157811990 157812110 -84852243 + L1ME LINE L1 2176 2302 -3827 264 341 45 0 chr1 157812173 157812261 -84852092 - MIR SINE MIR -168 94 3 333 0 0 0 chr1 157812431 157812468 -84851885 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chr1 157812635 157812667 -84851686 + AT_rich Low_complexity Low_complexity 1 32 0 962 243 8 53 chr1 157812760 157813023 -84851330 + MIR SINE MIR 1 251 -11 439 326 175 11 chr1 157813052 157813423 -84850930 + L1ME LINE L1 4448 4879 -1250 347 287 83 26 chr1 157813444 157813674 -84850679 + MER112 DNA MER1_type 12 254 -6 2253 119 0 0 chr1 157813926 157814221 -84850132 + AluSx SINE Alu 1 295 -17 694 264 35 18 chr1 157814231 157814515 -84849838 + L1ME LINE L1 5238 5526 -623 319 303 76 8 chr1 157815258 157815377 -84848976 - L2 LINE L2 -5 3308 3182 613 261 14 112 chr1 157815673 157815888 -84848465 + MER91A DNA MER1_type 2 195 -1 501 252 184 14 chr1 157816099 157816246 -84848107 - MIR3 SINE MIR -16 192 21 410 317 45 40 chr1 157816951 157817150 -84847203 + MIR SINE MIR 24 223 -39 480 346 122 13 chr1 157818006 157818243 -84846110 - L3 LINE CR1 -3 1574 1312 522 282 51 26 chr1 157818525 157818720 -84845633 - L2 LINE L2 -19 3294 3095 319 277 8 25 chr1 157818738 157818857 -84845496 - L1M4 LINE L1 -988 5158 5042 403 183 0 29 chr1 157818863 157818967 -84845386 + CT-rich Low_complexity Low_complexity 2 102 0 226 281 16 0 chr1 157819105 157819169 -84845184 + (TA)n Simple_repeat Simple_repeat 1 65 0 329 320 20 30 chr1 157819170 157819470 -84844883 - L1M4 LINE L1 -1332 4814 4518 502 344 167 5 chr1 157819733 157819948 -84844405 + MIR SINE MIR 13 262 0 2025 259 56 61 chr1 157821113 157821897 -84842456 + L2 LINE L2 1641 2420 -894 7002 43 1 47 chr1 157821900 157822905 -84841448 - L1P LINE L1 -3028 3118 2160 * 11641 56 5 2 chr1 157822896 157824466 -84839887 - L1P LINE L1 -1430 4716 3143 4765 71 3 25 chr1 157824467 157825195 -84839158 + L1P LINE L1 4660 5371 -775 25 0 0 0 chr1 157825482 157825507 -84838846 + AT_rich Low_complexity Low_complexity 1 25 0 264 340 21 0 chr1 157827190 157827284 -84837069 - L2 LINE L2 -81 3232 3137 256 360 54 30 chr1 157828223 157828426 -84835927 - MIR SINE MIR -4 258 51 23 54 0 0 chr1 157829400 157829437 -84834916 + AT_rich Low_complexity Low_complexity 1 37 0 288 267 9 29 chr1 157829695 157829800 -84834553 - L1ME LINE L1 -480 5641 5539 399 343 64 17 chr1 157830333 157830566 -84833787 + L2 LINE L2 2628 2871 -443 349 323 73 0 chr1 157830831 157830955 -84833398 + L2 LINE L2 3181 3313 0 991 197 116 0 chr1 157831012 157831271 -84833082 + L1 LINE L1 5045 5333 -813 24592 57 3 5 chr1 157831272 157835414 -84828939 + L1PA5 LINE L1 2024 6153 -1 1540 275 45 62 chr1 157835414 157836337 -84828016 + L2 LINE L2 2414 3313 0 314 241 69 35 chr1 157836634 157836750 -84827603 + MIR SINE MIR 62 181 -81 231 282 86 69 chr1 157837045 157837262 -84827091 - MIR3 SINE MIR -50 212 1 195 287 35 23 chr1 157838075 157838162 -84826191 + L2 LINE L2 3226 3313 0 1210 149 0 11 chr1 157838217 157838405 -84825948 - AluSg/x SINE Alu 0 312 127 192 362 52 0 chr1 157839416 157839532 -84824821 + L2 LINE L2 3151 3272 0 271 270 27 0 chr1 157839905 157839979 -84824374 - L2 LINE L2 -298 2974 2899 889 240 50 45 chr1 157841205 157841447 -84822906 - MIR SINE MIR -6 256 14 188 318 166 26 chr1 157841692 157841843 -84822510 - L3 LINE CR1 -226 1351 1180 * 205 236 73 0 chr1 157841815 157841870 -84822483 + L2 LINE L2 54 112 -3202 495 33 0 0 chr1 157842657 157842718 -84821635 + (TG)n Simple_repeat Simple_repeat 1 61 0 327 85 0 0 chr1 157842728 157842775 -84821578 + (GA)n Simple_repeat Simple_repeat 2 48 0 475 297 75 29 chr1 157843026 157843507 -84820846 + L1ME4a LINE L1 5617 6119 -2 310 340 115 15 chr1 157843930 157844130 -84820223 - MIR SINE MIR -10 252 33 2455 184 59 16 chr1 157844425 157845927 -84818426 + L1MC1 LINE L1 4751 6333 0 275 314 130 11 chr1 157845973 157846158 -84818195 - LTR67 LTR ERVL -305 252 46 3579 164 7 52 chr1 157846951 157847747 -84816606 + L1MB1 LINE L1 5284 6042 -126 2874 184 17 6 chr1 157847743 157848405 -84815948 - L1PB1 LINE L1 -1265 4881 4213 * 2762 130 19 2 chr1 157848405 157849595 -84814758 + L1PB1 LINE L1 4892 6150 -1 836 99 21 28 chr1 157849604 157849745 -84814608 + L1MB1 LINE L1 6028 6167 -1 532 278 158 27 chr1 157850601 157850860 -84813493 - L2 LINE L2 0 3313 3021 467 164 0 0 chr1 157851354 157851427 -84812926 + AluJ/FLAM SINE Alu 1 73 -239 825 208 69 0 chr1 157852337 157852510 -84811843 - MER58A DNA MER1_type 0 224 40 493 82 0 82 chr1 157852583 157852668 -84811685 - MADE1 DNA Mariner -1 79 2 406 200 137 0 chr1 157853338 157853433 -84810920 + MER103 DNA DNA 2 109 -57 590 296 49 40 chr1 157854038 157854285 -84810068 + MIR SINE MIR 1 249 -13 321 261 80 58 chr1 157854312 157854441 -84809912 + L1ME4a LINE L1 5926 6062 -59 2415 69 0 0 chr1 157854441 157854744 -84809609 + AluY SINE Alu 1 303 -8 321 261 80 58 chr1 157854744 157854802 -84809551 + L1ME4a LINE L1 6062 6117 -4 340 258 125 17 chr1 157855153 157855273 -84809080 + MLT1J2 LTR MaLR 193 325 -125 499 274 81 22 chr1 157855485 157855708 -84808645 - L1ME LINE L1 -512 5658 5423 653 297 74 7 chr1 157855815 157856354 -84807999 + L1ME LINE L1 4756 5330 -816 1384 283 91 26 chr1 157856701 157857497 -84806856 - L2 LINE L2 -4 3309 2458 5271 141 38 20 chr1 157857813 157858978 -84805375 - L1MA8 LINE L1 0 6291 5108 313 336 76 0 chr1 157859076 157859195 -84805158 - L2 LINE L2 -5 3308 3181 366 345 65 13 chr1 157859460 157859692 -84804661 - L2 LINE L2 -443 2871 2628 305 276 41 0 chr1 157860251 157860349 -84804004 + L1ME LINE L1 5562 5663 -458 25 31 0 0 chr1 157861169 157861201 -84803152 + AT_rich Low_complexity Low_complexity 1 32 0 205 366 59 30 chr1 157861605 157861807 -84802546 + MIR SINE MIR 51 258 -4 235 365 21 0 chr1 157864316 157864412 -84799941 + L2 LINE L2 3137 3234 -79 23 54 0 0 chr1 157865412 157865449 -84798904 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr1 157866094 157866119 -84798234 + AT_rich Low_complexity Low_complexity 1 25 0 305 346 87 0 chr1 157867440 157867567 -84796786 - MIR SINE MIR -124 138 1 497 193 147 18 chr1 157867660 157867769 -84796584 - L2 LINE L2 0 3313 3191 533 296 51 86 chr1 157867799 157868297 -84796056 - L2 LINE L2 -4 3268 2791 238 296 130 25 chr1 157869213 157869375 -84794978 - L2 LINE L2 -197 3075 2897 189 74 0 0 chr1 157870798 157870825 -84793528 + (TC)n Simple_repeat Simple_repeat 2 28 0 661 247 87 46 chr1 157870850 157871069 -84793284 + MIR SINE MIR 35 262 0 2863 88 0 3 chr1 157871804 157872180 -84792173 - THE1C LTR MaLR 0 375 1 341 318 73 93 chr1 157872251 157872606 -84791747 + L2 LINE L2 2917 3264 -8 367 261 52 15 chr1 157872750 157872884 -84791469 + MER117 DNA MER1_type 4 142 -55 223 303 156 33 chr1 157873128 157873250 -84791103 + L2 LINE L2 3160 3296 -17 544 191 0 16 chr1 157874360 157874486 -84789867 + L1ME3A LINE L1 6046 6169 -1 363 350 69 0 chr1 157876996 157877156 -84787197 + MIR SINE MIR 25 195 -67 * 1011 262 82 56 chr1 157877150 157877248 -84787105 - L2 LINE L2 -64 3249 3155 302 0 26 0 chr1 157877248 157877286 -84787067 + (CA)n Simple_repeat Simple_repeat 2 40 0 1011 262 82 56 chr1 157877286 157877869 -84786484 - L2 LINE L2 -158 3155 2538 2545 229 29 8 chr1 157877889 157878554 -84785799 - L1MB7 LINE L1 -10 6174 5496 485 348 59 22 chr1 157878556 157878829 -84785524 - L2 LINE L2 -1762 1552 1270 1081 269 45 102 chr1 157878841 157879555 -84784798 - L2 LINE L2 -2227 1087 415 207 171 0 0 chr1 157879769 157879804 -84784549 + (CA)n Simple_repeat Simple_repeat 2 36 0 6861 57 37 0 chr1 157879997 157880670 -84783683 - L1PA7 LINE L1 -2 6152 5471 2011 138 0 3 chr1 157880670 157880968 -84783385 - AluSg SINE Alu -13 297 1 6861 57 37 0 chr1 157880968 157881272 -84783081 - L1PA7 LINE L1 -683 5471 5180 4837 86 39 1 chr1 157881272 157881992 -84782361 - L1P LINE L1 -1224 4922 4176 234 0 0 0 chr1 157884715 157884741 -84779612 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2125 86 8 0 chr1 157885279 157885607 -84778746 + AluSq SINE Alu 14 343 0 22 0 0 0 chr1 157886415 157886437 -84777916 + AT_rich Low_complexity Low_complexity 1 22 0 307 241 0 38 chr1 157886669 157886748 -84777605 + MER94 DNA DNA 20 95 -39 436 306 61 25 chr1 157887457 157887653 -84776700 - MIR SINE MIR -59 203 1 323 173 74 12 chr1 157888947 157889028 -84775325 - L1ME LINE L1 -521 5600 5515 239 164 36 0 chr1 157889094 157889149 -84775204 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 479 207 85 49 chr1 157889360 157889524 -84774829 - MLT1J LTR MaLR 0 511 342 245 279 126 0 chr1 157889652 157889763 -84774590 - MLT1J LTR MaLR -380 131 7 3465 192 34 13 chr1 157890731 157891446 -84772907 + L1MB4 LINE L1 5451 6180 0 2247 166 31 42 chr1 157891477 157891928 -84772425 + MSTB2 LTR MaLR 12 457 0 185 289 0 0 chr1 157892083 157892128 -84772225 - MIR SINE MIR -129 79 35 293 260 139 64 chr1 157892539 157892712 -84771641 - MIR SINE MIR -69 193 8 438 200 168 0 chr1 157893158 157893253 -84771100 - MER81 DNA DNA -3 111 1 426 252 50 31 chr1 157895336 157895472 -84768881 + MIR SINE MIR 16 152 -67 1070 230 18 5 chr1 157895474 157895696 -84768657 + MIR SINE MIR 13 237 -25 778 190 70 60 chr1 157896009 157896153 -84768200 - LTR37A LTR ERV1 0 426 285 333 0 0 0 chr1 157896153 157896190 -84768163 + (CA)n Simple_repeat Simple_repeat 2 38 0 778 190 70 60 chr1 157896190 157896225 -84768128 - LTR37A LTR ERV1 -141 285 252 1016 26 0 0 chr1 157896225 157896338 -84768015 + L1PA5 LINE L1 6040 6152 -2 778 190 70 60 chr1 157896338 157896615 -84767738 - LTR37A LTR ERV1 -174 252 35 212 244 0 0 chr1 157898811 157898856 -84765497 + G-rich Low_complexity Low_complexity 3 47 0 250 269 129 0 chr1 157899074 157899167 -84765186 - MER5A DNA MER1_type -77 112 8 197 204 45 0 chr1 157899259 157899303 -84765050 + L2 LINE L2 3267 3312 -1 305 340 50 38 chr1 157899422 157899581 -84764772 - MIR SINE MIR -74 188 28 308 147 44 15 chr1 157900257 157900325 -84764028 - MER92C LTR ERV1 -1 553 484 374 176 15 169 chr1 157900436 157900572 -84763781 - MER92B LTR ERV1 -521 115 1 595 213 65 93 chr1 157900691 157900758 -84763595 - MER63A DNA MER1_type -1478 210 143 2349 194 75 7 chr1 157900758 157901212 -84763141 + MER31A LTR ERV1 1 485 0 595 213 65 93 chr1 157901212 157901360 -84762993 - MER63A DNA MER1_type -1545 143 1 1920 148 0 17 chr1 157902095 157902392 -84761961 - AluSx SINE Alu -20 292 1 207 333 56 0 chr1 157902535 157902607 -84761746 - L2 LINE L2 -258 3014 2939 188 378 55 8 chr1 157902972 157903099 -84761254 - L2 LINE L2 -798 2516 2384 24 32 0 0 chr1 157903454 157903485 -84760868 + AT_rich Low_complexity Low_complexity 1 31 0 479 325 111 29 chr1 157903816 157904232 -84760121 + L2 LINE L2 1441 1890 -1424 1010 279 98 6 chr1 157904234 157904549 -84759804 - L2 LINE L2 -557 2757 2414 3787 259 140 26 chr1 157904611 157906058 -84758295 - L2 LINE L2 -526 2788 1177 264 309 103 15 chr1 157906637 157906773 -84757580 + MIR SINE MIR 107 254 -8 22 35 0 0 chr1 157906790 157906819 -84757534 + AT_rich Low_complexity Low_complexity 1 29 0 246 233 0 0 chr1 157906913 157906956 -84757397 + U6 snRNA snRNA 49 91 -16 443 323 30 12 chr1 157907033 157907197 -84757156 + MIR SINE MIR 96 262 0 307 240 33 91 chr1 157908236 157908357 -84755996 + MIR SINE MIR 49 162 -100 2184 90 10 23 chr1 157908874 157909184 -84755169 - AluSc SINE Alu -3 306 1 219 333 22 7 chr1 157909268 157909403 -84754950 + GA-rich Low_complexity Low_complexity 2 138 0 252 59 0 0 chr1 157909855 157909889 -84754464 + (T)n Simple_repeat Simple_repeat 1 34 0 453 314 59 13 chr1 157910610 157910763 -84753590 - MIR SINE MIR -74 188 29 423 349 16 21 chr1 157911401 157911590 -84752763 - MER5A DNA MER1_type -1 188 1 198 323 94 42 chr1 157911637 157911733 -84752620 + L2 LINE L2 3182 3282 -31 2005 23 0 0 chr1 157912970 157913189 -84751164 - AluYa5 SINE Alu -7 304 86 274 226 83 12 chr1 157913691 157913775 -84750578 - L2 LINE L2 -983 2331 2242 246 321 112 22 chr1 157913845 157914069 -84750284 + L2 LINE L2 1981 2224 -1090 515 324 113 0 chr1 157914082 157914224 -84750129 + L2 LINE L2 3115 3272 0 539 345 93 8 chr1 157915618 157916006 -84748347 + L3 LINE CR1 1132 1552 -25 518 259 64 38 chr1 157917714 157917952 -84746401 - MIR SINE MIR -1 261 20 415 250 125 33 chr1 157918133 157918317 -84746036 - L2 LINE L2 0 3313 3113 276 196 0 0 chr1 157918374 157918430 -84745923 + L1M4 LINE L1 4720 4775 -1371 285 174 72 0 chr1 157918558 157918627 -84745726 + L1M4 LINE L1 4786 4859 -1287 1080 218 17 13 chr1 157918987 157919221 -84745132 + L1M4 LINE L1 4848 5082 -1064 403 317 11 43 chr1 157919379 157919565 -84744788 - L2 LINE L2 -600 2714 2535 275 318 55 18 chr1 157919606 157919760 -84744593 - MIR SINE MIR -63 145 40 228 143 0 0 chr1 157921337 157921379 -84742974 + (CA)n Simple_repeat Simple_repeat 2 43 0 1998 196 81 18 chr1 157921574 157922008 -84742345 + MER65C LTR ERV1 1 461 0 701 284 74 76 chr1 157923078 157923564 -84740789 + MLT1L LTR MaLR 1 485 -130 774 109 27 54 chr1 157923617 157923764 -84740589 - L1MA9 LINE L1 0 6312 6170 1168 88 6 11 chr1 157923765 157923771 -84740582 + (TTTC)n Simple_repeat Simple_repeat 1 185 0 1168 88 6 11 chr1 157923771 157923952 -84740401 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 305 151 19 0 chr1 157924036 157924089 -84740264 - L1MA9 LINE L1 -164 6148 6095 209 264 69 69 chr1 157924630 157924774 -84739579 + L2 LINE L2 3169 3312 -1 247 213 148 0 chr1 157925716 157925777 -84738576 - MER103 DNA DNA -80 86 17 282 260 198 0 chr1 157925829 157925925 -84738428 - L2 LINE L2 -1 3312 3198 2247 152 23 6 chr1 157927546 157927895 -84736458 - THE1A LTR MaLR 0 355 1 217 306 56 46 chr1 157928486 157928594 -84735759 + L2 LINE L2 3195 3303 -10 372 274 106 111 chr1 157928905 157929284 -84735069 - L2 LINE L2 0 3272 2896 2157 228 25 61 chr1 157929436 157930070 -84734283 - MLT2B3 LTR ERVL -1 519 1 458 193 84 17 chr1 157930903 157931022 -84733331 + MIR SINE MIR 88 214 -48 498 211 79 0 chr1 157931031 157931145 -84733208 + L2 LINE L2 3191 3313 0 388 338 61 74 chr1 157931293 157931870 -84732483 + L2 LINE L2 2703 3269 -3 589 312 42 21 chr1 157931888 157932125 -84732228 + MIR SINE MIR 20 261 -1 1905 142 16 7 chr1 157932850 157933159 -84731194 + AluSx SINE Alu 1 312 0 256 216 54 14 chr1 157933368 157933442 -84730911 - MIR SINE MIR -89 173 97 727 257 30 25 chr1 157933858 157934095 -84730258 + LTR16A LTR ERVL 32 269 -181 565 312 50 9 chr1 157935010 157935231 -84729122 - MIR SINE MIR -13 249 20 431 297 49 11 chr1 157935478 157935663 -84728690 - MIR SINE MIR -51 211 20 1541 75 5 0 chr1 157935786 157936003 -84728350 - AluSc SINE Alu 0 310 93 711 171 227 7 chr1 157936228 157936402 -84727951 - L1PA16 LINE L1 0 6166 5957 335 284 89 6 chr1 157937113 157937282 -84727071 - MIR SINE MIR -16 246 64 1517 225 60 60 chr1 157938891 157939388 -84724965 - MLT1D LTR MaLR -8 497 1 825 305 74 14 chr1 157939721 157940156 -84724197 + MLT1J1 LTR MaLR 3 425 -21 1021 178 11 5 chr1 157940736 157940927 -84723426 + MER96B DNA MER1_type? 1 192 -225 306 300 120 20 chr1 157941066 157941166 -84723187 - L2 LINE L2 -1 3312 3203 504 320 0 0 chr1 157941178 157941331 -84723022 - MLT1I LTR MaLR -255 154 2 900 242 99 56 chr1 157941564 157941956 -84722397 - MLT1C LTR MaLR 0 467 59 23 33 0 0 chr1 157943160 157943190 -84721163 + AT_rich Low_complexity Low_complexity 1 30 0 1391 163 4 4 chr1 157943252 157943516 -84720837 + L1MA6 LINE L1 5407 5670 -630 14183 132 14 21 chr1 157943516 157943572 -84720781 + Tigger1 DNA MER2_type 1 56 -2362 2409 88 0 0 chr1 157943572 157943879 -84720474 - AluSx SINE Alu -5 307 1 14183 132 14 21 chr1 157943879 157944299 -84720054 + Tigger1 DNA MER2_type 56 478 -1940 16591 30 1 0 chr1 157944299 157947023 -84717330 - L1PA3 LINE L1 0 6155 3409 14183 132 14 21 chr1 157947023 157948981 -84715372 + Tigger1 DNA MER2_type 478 2417 -1 3600 140 11 6 chr1 157948981 157949603 -84714750 + L1MA6 LINE L1 5668 6292 -8 906 114 8 0 chr1 157949944 157950075 -84714278 - FLAM_C SINE Alu -1 142 11 326 300 0 0 chr1 157950383 157950473 -84713880 + MIR SINE MIR 94 183 -79 230 319 77 11 chr1 157950564 157950655 -84713698 + L3 LINE CR1 1478 1574 -3 1949 205 55 9 chr1 157952515 157952894 -84711459 + MLT2B1 LTR ERVL 82 483 -37 414 0 0 0 chr1 157952894 157952940 -84711413 + (TA)n Simple_repeat Simple_repeat 2 47 0 1949 205 55 9 chr1 157952940 157952980 -84711373 + MLT2B1 LTR ERVL 483 520 0 1121 199 78 59 chr1 157952983 157953091 -84711262 + MLT2C1 LTR ERVL 38 142 -255 1969 157 0 0 chr1 157953091 157953378 -84710975 + AluSx SINE Alu 1 287 -25 1121 199 78 59 chr1 157953378 157953575 -84710778 + MLT2C1 LTR ERVL 142 349 -48 2023 208 174 85 chr1 157953705 157954508 -84709845 + MLT1-int LTR MaLR 8 882 -489 256 254 0 0 chr1 157954713 157954768 -84709585 + MLT1-int LTR MaLR 959 1013 -358 613 233 161 5 chr1 157954768 157954961 -84709392 + MLT1D LTR MaLR 279 501 -4 348 218 0 39 chr1 157955021 157955099 -84709254 - L2 LINE L2 -12 3301 3227 2369 43 0 33 chr1 157955308 157955639 -84708714 + AluY SINE Alu 1 311 0 298 332 139 9 chr1 157955772 157955995 -84708358 - L2 LINE L2 -814 2500 2249 209 346 93 40 chr1 157956028 157956381 -84707972 - L2 LINE L2 -1501 1813 1442 1233 210 107 32 chr1 157956403 157956750 -84707603 - MLT1F LTR MaLR 0 542 170 242 247 71 24 chr1 157957414 157957499 -84706854 + MER81 DNA DNA 26 114 0 408 192 158 17 chr1 157959515 157959635 -84704718 + MIR SINE MIR 53 189 -73 2134 93 16 42 chr1 157959861 157960172 -84704181 - AluY SINE Alu -8 303 1 210 303 20 99 chr1 157960567 157960719 -84703634 + L2 LINE L2 3158 3297 -16 312 318 42 47 chr1 157960870 157961062 -84703291 - MIR SINE MIR -70 192 2 24417 141 22 14 chr1 157962982 157969335 -84695018 - L1PA8 LINE L1 -3 6484 1 355 340 61 0 chr1 157970043 157970190 -84694163 + MIR SINE MIR 20 175 -87 324 352 40 0 chr1 157970870 157970995 -84693358 - L2 LINE L2 -4 3268 3139 349 298 128 49 chr1 157971097 157971362 -84692991 - L2 LINE L2 -435 2879 2594 204 292 0 0 chr1 157971437 157971485 -84692868 - L2 LINE L2 -4 3309 3262 36 0 0 0 chr1 157972415 157972451 -84691902 + AT_rich Low_complexity Low_complexity 1 36 0 336 198 23 81 chr1 157972457 157972543 -84691810 - L2 LINE L2 0 3272 3192 457 317 68 10 chr1 157972735 157972940 -84691413 + MIR SINE MIR 24 240 -22 286 234 96 62 chr1 157974055 157974211 -84690142 + MIR SINE MIR 31 192 -65 205 306 74 50 chr1 157974289 157974410 -84689943 + MIR3 SINE MIR 1 124 -84 349 253 121 0 chr1 157975504 157975595 -84688758 - L2 LINE L2 -1 3312 3211 298 306 258 24 chr1 157976118 157976370 -84687983 - L2 LINE L2 -4 3268 2958 744 274 127 0 chr1 157978274 157978486 -84685867 - MIR SINE MIR -11 251 13 224 292 46 0 chr1 157978485 157978550 -84685803 + L2 LINE L2 2981 3048 -224 * 341 319 80 14 chr1 157978858 157978996 -84685357 - MIR3 SINE MIR -5 203 57 227 296 34 23 chr1 157980035 157980123 -84684230 + L2 LINE L2 3184 3272 0 1934 153 0 7 chr1 157981692 157981992 -84682361 + AluJb SINE Alu 1 298 -14 183 293 0 0 chr1 157982043 157982084 -84682269 - L2 LINE L2 -16 3256 3216 334 287 189 17 chr1 157982409 157982605 -84681748 - MIR SINE MIR -31 231 3 636 185 162 6 chr1 157983306 157983479 -84680874 + MER20 DNA MER1_type 16 215 -4 22 0 0 0 chr1 157983660 157983682 -84680671 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 157984299 157984323 -84680030 + AT_rich Low_complexity Low_complexity 1 24 0 2083 163 14 8 chr1 157984789 157985152 -84679201 + MLT1A1 LTR MaLR 1 365 0 309 26 0 0 chr1 157985603 157985641 -84678712 + (TG)n Simple_repeat Simple_repeat 2 39 0 431 242 95 52 chr1 157986163 157986394 -84677959 - MER112 DNA MER1_type -6 254 14 313 308 67 10 chr1 157986410 157986514 -84677839 + L2 LINE L2 3190 3299 -14 198 259 238 28 chr1 157986499 157986642 -84677711 + MIR SINE MIR 73 245 -17 * 2216 121 0 0 chr1 157987325 157987623 -84676730 - AluSx SINE Alu -13 299 2 899 72 0 0 chr1 157989163 157989288 -84675065 + AluY SINE Alu 186 310 -1 197 33 33 0 chr1 157989294 157989324 -84675029 + (TG)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr1 157989484 157989506 -84674847 + AT_rich Low_complexity Low_complexity 1 22 0 2053 125 60 28 chr1 157990450 157990803 -84673550 + THE1B LTR MaLR 1 364 0 253 221 354 11 chr1 157991787 157991968 -84672385 + MIR SINE MIR 20 262 0 22 0 0 0 chr1 157991948 157991970 -84672383 + AT_rich Low_complexity Low_complexity 1 22 0 * 2716 102 19 11 chr1 157992288 157992659 -84671694 + THE1C LTR MaLR 2 375 0 1410 196 75 39 chr1 157992660 157992992 -84671361 + MER2 DNA MER2_type 1 344 0 816 70 86 23 chr1 157993281 157993409 -84670944 - L1PA5 LINE L1 0 6154 6019 197 303 121 20 chr1 157994700 157994799 -84669554 - L2 LINE L2 0 3272 3164 2309 91 0 31 chr1 157995712 157996032 -84668321 - AluY SINE Alu -1 310 1 196 205 241 89 chr1 157996564 157996676 -84667677 - L2 LINE L2 0 3313 3185 231 280 53 53 chr1 157996769 157996844 -84667509 - L2 LINE L2 -4 3309 3235 203 245 0 38 chr1 157997704 157997757 -84666596 + GA-rich Low_complexity Low_complexity 1 51 0 40 0 0 0 chr1 157998432 157998472 -84665881 + AT_rich Low_complexity Low_complexity 1 40 0 359 326 11 34 chr1 157998608 157998786 -84665567 + MIR3 SINE MIR 20 193 -15 462 254 25 62 chr1 157999270 157999514 -84664839 - HAL1b LINE L1 -111 1237 1003 211 269 115 29 chr1 157999572 157999676 -84664677 - MIR3 SINE MIR -87 121 9 378 248 29 7 chr1 158000224 158000361 -84663992 - HAL1b LINE L1 -195 1153 1014 21 0 0 0 chr1 158000871 158000892 -84663461 + AT_rich Low_complexity Low_complexity 1 21 0 273 57 0 0 chr1 158000936 158000971 -84663382 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7073 91 0 4 chr1 158001254 158002492 -84661861 - L1PA8 LINE L1 -4 6168 4932 609 273 108 0 chr1 158003315 158003509 -84660844 + MIR SINE MIR 2 216 -46 245 314 0 29 chr1 158004767 158004872 -84659481 + MIR3 SINE MIR 4 105 -103 202 348 146 0 chr1 158007058 158007147 -84657206 + MIR SINE MIR 25 126 -136 585 240 10 75 chr1 158007170 158007370 -84656983 - MIR SINE MIR 0 262 76 306 0 0 0 chr1 158007562 158007596 -84656757 + (CA)n Simple_repeat Simple_repeat 2 35 0 290 301 29 10 chr1 158008405 158008508 -84655845 + MIR3 SINE MIR 99 203 -5 716 170 150 50 chr1 158008542 158008742 -84655611 - L1MD3 LINE L1 0 7995 7776 726 231 144 31 chr1 158009123 158009379 -84654974 - L2 LINE L2 0 3313 3029 594 75 19 28 chr1 158009893 158010000 -84654353 + (TTTCC)n Simple_repeat Simple_repeat 4 109 0 199 173 39 0 chr1 158010021 158010073 -84654280 + CT-rich Low_complexity Low_complexity 2 55 0 363 305 53 13 chr1 158011183 158011334 -84653019 - MIR3 SINE MIR -33 175 19 425 277 208 15 chr1 158011919 158012121 -84652232 + MIR SINE MIR 21 261 -1 1938 153 3 6 chr1 158012238 158012551 -84651802 - AluJo SINE Alu 0 312 1 429 260 280 4 chr1 158013076 158013326 -84651027 - MER5C DNA MER1_type 0 324 6 2841 174 94 103 chr1 158014683 158015320 -84649033 - L1ME1 LINE L1 0 6166 5537 2565 68 0 0 chr1 158015320 158015629 -84648724 + AluY SINE Alu 1 309 -2 2841 174 94 103 chr1 158015629 158015842 -84648511 - L1ME1 LINE L1 -629 5537 5324 428 315 34 17 chr1 158015906 158016084 -84648269 + MER5A DNA MER1_type 7 187 -2 309 26 0 0 chr1 158016246 158016284 -84648069 + (TG)n Simple_repeat Simple_repeat 2 39 0 345 337 22 28 chr1 158016481 158016659 -84647694 + MER5B DNA MER1_type 1 177 -1 23 0 0 0 chr1 158016670 158016693 -84647660 + AT_rich Low_complexity Low_complexity 1 23 0 1017 217 22 0 chr1 158017480 158017664 -84646689 + MER5A DNA MER1_type 2 189 0 231 217 0 0 chr1 158017873 158017933 -84646420 + CT-rich Low_complexity Low_complexity 1 60 0 3847 160 9 39 chr1 158017934 158018634 -84645719 - L1MB8 LINE L1 -10 6168 5490 267 318 12 24 chr1 158019469 158019554 -84644799 - MIR SINE MIR -22 240 157 1220 152 5 21 chr1 158019763 158019954 -84644399 - MER20 DNA MER1_type -31 188 1 230 217 0 87 chr1 158019973 158020042 -84644311 + MIR SINE MIR 118 180 -82 213 182 0 0 chr1 158020492 158020525 -84643828 + G-rich Low_complexity Low_complexity 3 35 0 252 330 22 0 chr1 158021063 158021154 -84643199 - MIR SINE MIR -110 152 60 330 258 50 99 chr1 158021630 158021746 -84642607 + MER5A DNA MER1_type 15 120 -69 2263 78 11 0 chr1 158021746 158022028 -84642325 - AluSc SINE Alu -22 287 3 330 258 50 99 chr1 158022028 158022093 -84642260 + MER5A DNA MER1_type 120 187 -2 243 203 0 94 chr1 158022601 158022665 -84641688 + MIR SINE MIR 172 229 -33 1302 271 108 23 chr1 158022706 158023186 -84641167 + LTR33 LTR ERVL 1 521 0 231 275 92 2 chr1 158023672 158023753 -84640600 - MIR SINE MIR -58 150 63 408 301 6 38 chr1 158023860 158024043 -84640310 + L2 LINE L2 3122 3298 -15 1515 177 3 61 chr1 158024218 158024364 -84639989 + AluJo SINE Alu 1 154 -158 2420 87 0 0 chr1 158024364 158024664 -84639689 + AluY SINE Alu 1 300 -11 1515 177 3 61 chr1 158024664 158024844 -84639509 + AluJo SINE Alu 154 308 -4 213 333 29 48 chr1 158024933 158025038 -84639315 + L2 LINE L2 3168 3270 -2 207 0 0 0 chr1 158025446 158025469 -84638884 + (TG)n Simple_repeat Simple_repeat 2 24 0 1482 237 65 29 chr1 158025772 158026219 -84638134 + MLT1C LTR MaLR 1 463 -4 466 288 85 7 chr1 158026774 158026927 -84637426 + MIR SINE MIR 83 247 -15 563 273 62 10 chr1 158027297 158027491 -84636862 - MIR SINE MIR -31 231 28 555 246 49 0 chr1 158028752 158028874 -84635479 + MIR3 SINE MIR 76 203 -5 328 281 26 82 chr1 158029047 158029278 -84635075 + L2 LINE L2 2869 3086 -186 13747 28 0 1 chr1 158029389 158031654 -84632699 - L1PA4 LINE L1 0 6155 3860 6976 34 0 4 chr1 158031654 158032498 -84631855 + L1PA4 LINE L1 3005 3845 -2301 646 88 0 0 chr1 158032513 158032593 -84631760 - MADE1 DNA Mariner 0 80 1 300 319 50 25 chr1 158032593 158032701 -84631652 + L2 LINE L2 3189 3302 -11 2492 85 11 51 chr1 158033585 158033774 -84630579 - L1PB1 LINE L1 -1 6150 5955 284 0 77 19 chr1 158033774 158033826 -84630527 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1480 120 0 0 chr1 158033826 158034026 -84630327 - AluSg/x SINE Alu -28 282 83 2492 85 11 51 chr1 158034026 158034210 -84630143 - L1PB1 LINE L1 -194 5957 5791 291 157 0 0 chr1 158034210 158034261 -84630092 + (TG)n Simple_repeat Simple_repeat 1 51 0 325 303 0 0 chr1 158034261 158034350 -84630003 + L1MC4 LINE L1 6615 6703 -1339 3543 155 19 16 chr1 158034369 158035600 -84628753 - L1P5 LINE L1 -360 5791 4567 471 251 121 29 chr1 158035723 158035930 -84628423 + MIR SINE MIR 37 262 0 473 264 60 30 chr1 158036112 158036279 -84628074 + MIR SINE MIR 89 260 -2 1980 134 21 0 chr1 158037514 158037798 -84626555 - AluSg1 SINE Alu -19 290 1 2805 16 0 0 chr1 158038389 158038697 -84625656 - AluYb8 SINE Alu -10 308 1 182 333 71 10 chr1 158039378 158039477 -84624876 - MIR3 SINE MIR -15 193 89 196 125 50 0 chr1 158039904 158039944 -84624409 + L2 LINE L2 3271 3312 -1 242 345 196 10 chr1 158040252 158040461 -84623892 - MIR SINE MIR -11 251 4 423 336 51 5 chr1 158041168 158041385 -84622968 - MIR SINE MIR -33 229 3 303 286 50 70 chr1 158041693 158041817 -84622536 - L3 LINE CR1 -32 1545 1425 2279 169 43 18 chr1 158041817 158042256 -84622097 + LTR7 LTR ERV1 1 450 0 303 286 50 70 chr1 158042256 158042330 -84622023 - L3 LINE CR1 -152 1425 1351 402 278 85 62 chr1 158042451 158042627 -84621726 + MIR SINE MIR 35 214 -48 442 270 147 18 chr1 158044269 158044432 -84619921 + MIR3 SINE MIR 16 199 -9 32 43 0 0 chr1 158044508 158044554 -84619799 + AT_rich Low_complexity Low_complexity 1 46 0 817 172 90 0 chr1 158044554 158044699 -84619654 - FAM SINE Alu -17 158 1 400 273 0 0 chr1 158044794 158044893 -84619460 - MIR3 SINE MIR -18 190 92 876 271 54 4 chr1 158046321 158046561 -84617792 + MIR SINE MIR 1 252 -10 480 209 72 43 chr1 158046633 158046772 -84617581 - MLT1J1 LTR MaLR -18 428 286 499 196 49 53 chr1 158046812 158047028 -84617325 + MER58 DNA MER1_type 8 2419 -1 515 301 47 25 chr1 158047029 158047265 -84617088 - MLT1J2 LTR MaLR -186 264 24 5691 97 0 4 chr1 158047946 158049226 -84615127 - L1PA10 LINE L1 0 6168 4930 2430 79 9 20 chr1 158049245 158049586 -84614767 - L1PA8A LINE L1 0 6131 5795 30 0 0 0 chr1 158049680 158049710 -84614643 + AT_rich Low_complexity Low_complexity 1 30 0 587 233 99 39 chr1 158049725 158049843 -84614510 - L1M4 LINE L1 -1392 4754 4645 225 65 0 0 chr1 158049843 158049874 -84614479 + (CA)n Simple_repeat Simple_repeat 2 32 0 587 233 99 39 chr1 158049874 158049987 -84614366 - L1M4 LINE L1 -1501 4645 4509 1003 83 0 35 chr1 158049988 158050132 -84614221 - AluSc SINE Alu -12 297 159 390 276 93 36 chr1 158050209 158050338 -84614015 - L1M4 LINE L1 -1768 4378 4258 2424 87 0 0 chr1 158050338 158050636 -84613717 - AluY SINE Alu -13 298 1 390 276 93 36 chr1 158050636 158050785 -84613568 - L1M4 LINE L1 -1888 4258 4084 703 279 61 8 chr1 158050792 158051168 -84613185 - L1M4 LINE L1 -2191 3955 3560 5357 179 34 3 chr1 158051170 158052566 -84611787 - L1MC1 LINE L1 -6 6396 4960 3374 254 63 74 chr1 158052826 158053500 -84610853 - L1MC1 LINE L1 -1241 4974 4295 2233 125 0 0 chr1 158053500 158053811 -84610542 - AluSx SINE Alu -1 311 1 3374 254 63 74 chr1 158053811 158055931 -84608422 - L1MC1 LINE L1 -1920 4295 2209 396 284 113 0 chr1 158055967 158056171 -84608182 - L1MC1 LINE L1 -4742 1654 1428 246 32 0 0 chr1 158056191 158056222 -84608131 + (TG)n Simple_repeat Simple_repeat 2 32 0 246 309 96 78 chr1 158056391 158056621 -84607732 + L2 LINE L2 2832 3065 -207 186 310 113 0 chr1 158056765 158056836 -84607517 + L2 LINE L2 3190 3268 -4 899 283 0 0 chr1 158056883 158057088 -84607265 - MIR SINE MIR -12 250 46 21 0 0 0 chr1 158057280 158057301 -84607052 + AT_rich Low_complexity Low_complexity 1 21 0 243 269 19 67 chr1 158058425 158058529 -84605824 - MIR SINE MIR -40 222 124 184 273 107 58 chr1 158058906 158059027 -84605326 - L2 LINE L2 -38 3275 3149 214 320 80 32 chr1 158059131 158059256 -84605097 - L2 LINE L2 -274 2998 2868 1312 207 97 25 chr1 158060408 158060843 -84603510 + Charlie4a DNA MER1_type 40 505 -3 265 266 8 70 chr1 158061538 158061666 -84602687 + MIR3 SINE MIR 82 201 -7 1223 184 4 4 chr1 158063168 158063401 -84600952 - MER82 DNA MER2_type -419 234 2 307 309 75 0 chr1 158063452 158063546 -84600807 - L2 LINE L2 -21 3251 3151 248 236 83 14 chr1 158063648 158063720 -84600633 - MIR SINE MIR -98 164 88 844 150 92 17 chr1 158065275 158065448 -84598905 - MER53 DNA DNA 0 189 4 515 289 112 46 chr1 158066022 158066736 -84597617 + L1MEd LINE L1 496 1256 -4863 338 327 65 20 chr1 158066741 158066894 -84597459 + HAL1 LINE L1 1398 1557 -950 460 322 113 20 chr1 158067251 158067419 -84596934 + L1MEd LINE L1 2224 2375 -3754 2161 131 0 3 chr1 158067419 158067732 -84596621 + AluSq SINE Alu 1 312 -1 460 322 113 20 chr1 158067732 158067960 -84596393 + L1MEd LINE L1 2375 2657 -3472 575 325 63 35 chr1 158067960 158068590 -84595763 + L1MEd LINE L1 3550 4197 -1932 4650 93 23 6 chr1 158068885 158069574 -84594779 - L1PA13 LINE L1 0 6163 5463 10258 70 14 29 chr1 158069784 158071188 -84593165 - SVA Other Other -3 1383 2 400 311 25 19 chr1 158071545 158071706 -84592647 - MIR SINE MIR -54 208 47 227 368 54 30 chr1 158071912 158072078 -84592275 + MIR SINE MIR 29 198 -64 42 57 0 0 chr1 158072731 158072801 -84591552 + AT_rich Low_complexity Low_complexity 1 70 0 180 149 30 15 chr1 158072801 158072868 -84591485 + (TA)n Simple_repeat Simple_repeat 2 69 0 349 203 0 0 chr1 158072934 158073003 -84591350 - L1MC4 LINE L1 -1339 6703 6635 214 284 157 39 chr1 158073068 158073170 -84591183 - MIR SINE MIR -75 133 20 399 321 30 8 chr1 158074374 158074508 -84589845 + L2 LINE L2 3171 3307 -6 366 231 69 56 chr1 158074615 158074775 -84589578 + L1ME4a LINE L1 5957 6118 -3 206 325 118 69 chr1 158075088 158075510 -84588843 + L2 LINE L2 2824 3266 -6 321 182 15 30 chr1 158075963 158076029 -84588324 - L2 LINE L2 0 3272 3208 821 302 96 26 chr1 158076716 158077093 -84587260 + L2 LINE L2 2807 3209 -104 856 239 33 9 chr1 158077093 158077342 -84587011 + LTR40b LTR ERVL 1 313 -206 304 75 19 19 chr1 158077395 158077448 -84586905 + LTR40b LTR ERVL 385 437 -25 202 316 26 13 chr1 158078159 158078235 -84586118 - L2 LINE L2 -6 3307 3231 287 234 18 35 chr1 158078627 158078798 -84585555 + (TAA)n Simple_repeat Simple_repeat 1 168 0 298 198 210 0 chr1 158079267 158079348 -84585005 - MIR3 SINE MIR -6 202 105 191 315 0 0 chr1 158079679 158079733 -84584620 - MIR SINE MIR -102 106 53 1435 157 4 25 chr1 158080405 158080668 -84583685 - AluJb SINE Alu 0 312 61 353 214 12 0 chr1 158081436 158081520 -84582833 - MLT1J1 LTR MaLR -6 440 356 317 258 78 31 chr1 158081531 158081659 -84582694 - MLT1J1 LTR MaLR -212 234 101 237 183 14 113 chr1 158081959 158082030 -84582323 + MIR SINE MIR 96 159 -103 253 316 0 34 chr1 158082249 158082366 -84581987 + HAL1 LINE L1 226 338 -2169 1669 191 73 55 chr1 158082570 158083047 -84581306 - MLT1D LTR MaLR 0 505 20 391 272 44 7 chr1 158083080 158083216 -84581137 + HAL1 LINE L1 734 874 -1633 1910 134 173 3 chr1 158083979 158084338 -84580015 + MSTA LTR MaLR 9 428 0 2374 269 97 40 chr1 158085118 158086537 -84577816 - HAL1 LINE L1 0 2507 1008 2005 66 0 0 chr1 158086619 158086887 -84577466 - AluY SINE Alu 0 308 41 2158 125 0 3 chr1 158086931 158087601 -84576752 - AluSp SINE Alu 0 669 1 3537 143 12 52 chr1 158086965 158087980 -84576373 - L1MB1 LINE L1 -2 6166 5476 1028 145 13 67 chr1 158088128 158088420 -84575933 - L1MB1 LINE L1 -676 5492 5214 573 280 81 75 chr1 158088590 158089108 -84575245 - HAL1 LINE L1 -1940 567 47 308 300 73 9 chr1 158089345 158089455 -84574898 + L2 LINE L2 3155 3271 -1 673 286 34 30 chr1 158089535 158089769 -84574584 - MIR SINE MIR -14 248 14 294 115 0 0 chr1 158090184 158090236 -84574117 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 246 339 98 65 chr1 158090253 158090498 -84573855 - L2 LINE L2 -54 3218 2966 1819 195 0 3 chr1 158091319 158091632 -84572721 - AluJb SINE Alu 0 312 1 6375 100 3 3 chr1 158092367 158094158 -84570195 - L1PA10 LINE L1 -16 6152 4363 243 0 0 0 chr1 158094180 158094207 -84570146 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1873 137 39 3 chr1 158094207 158094481 -84569872 - AluSq SINE Alu -26 287 1 1332 95 62 5 chr1 158094481 158094692 -84569661 + THE1C LTR MaLR 153 375 0 502 231 48 14 chr1 158094692 158094839 -84569514 - MIR SINE MIR -52 210 59 1530 175 18 82 chr1 158095419 158095819 -84568534 + MLT1B LTR MaLR 5 378 -12 312 70 0 0 chr1 158096369 158096412 -84567941 + (CA)n Simple_repeat Simple_repeat 1 43 0 198 103 0 0 chr1 158097750 158097779 -84566574 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 263 321 197 16 chr1 158098392 158098585 -84565768 + MIR SINE MIR 28 255 -7 234 307 131 34 chr1 158099481 158099657 -84564696 + L3b LINE CR1 1184 1376 -207 1998 252 80 44 chr1 158100673 158101661 -84562692 - L2 LINE L2 0 3313 2289 1892 163 24 0 chr1 158102013 158102307 -84562046 + AluJo SINE Alu 1 301 -11 271 273 53 20 chr1 158103224 158103374 -84560979 - Charlie7 DNA MER1_type 0 2612 2458 212 219 0 0 chr1 158104711 158104752 -84559601 - L2 LINE L2 0 3272 3232 254 350 115 33 chr1 158104840 158105255 -84559098 - L2 LINE L2 -158 3114 2671 616 263 56 19 chr1 158105260 158105473 -84558880 - MER112 DNA MER1_type -12 248 28 242 319 89 24 chr1 158105598 158105767 -84558586 - L2 LINE L2 -779 2535 2356 665 160 13 4 chr1 158105793 158105924 -84558429 - MLT1D LTR MaLR 0 542 389 273 339 142 8 chr1 158106308 158106435 -84557918 - MIR3 SINE MIR -11 197 54 1793 159 58 28 chr1 158106632 158106996 -84557357 + THE1C LTR MaLR 1 375 0 190 352 150 28 chr1 158107141 158107388 -84556965 + L2 LINE L2 2701 2977 -337 215 273 18 0 chr1 158107728 158107783 -84556570 + MIR SINE MIR 178 233 -29 282 200 0 18 chr1 158108540 158108595 -84555758 - Tigger1 DNA MER2_type -1 2417 2364 1955 227 36 17 chr1 158108601 158109240 -84555113 + L1ME1 LINE L1 3912 4562 -1584 2511 191 19 100 chr1 158109262 158109463 -84554890 + L1MD2 LINE L1 5448 5664 -695 2039 164 0 0 chr1 158109463 158109796 -84554557 + AluSx SINE Alu 1 312 0 2511 191 19 100 chr1 158109796 158110352 -84554001 + L1MD2 LINE L1 5664 6143 -216 303 206 82 0 chr1 158110366 158110463 -84553890 + L1MD3 LINE L1 7891 7995 0 * 2890 233 42 22 chr1 158110462 158110765 -84553588 + L1ME1 LINE L1 4549 4845 -1321 1928 150 7 3 chr1 158110765 158111071 -84553282 - AluSx SINE Alu -5 307 1 2890 233 42 22 chr1 158111071 158112364 -84551989 + L1ME1 LINE L1 4845 6161 -5 1928 156 6 19 chr1 158112684 158112999 -84551354 - AluJb SINE Alu -1 311 1 24 0 0 0 chr1 158113910 158113934 -84550419 + AT_rich Low_complexity Low_complexity 1 24 0 627 248 59 40 chr1 158114349 158114551 -84549802 + MIR SINE MIR 34 239 -23 331 320 137 13 chr1 158114583 158114736 -84549617 + L2 LINE L2 3098 3269 -3 484 206 98 43 chr1 158115499 158115683 -84548670 - L2 LINE L2 -971 2343 2150 319 301 0 12 chr1 158115816 158115899 -84548454 - L2 LINE L2 0 3272 3191 295 185 15 22 chr1 158116013 158116148 -84548205 + (TA)n Simple_repeat Simple_repeat 1 134 0 261 0 0 0 chr1 158116363 158116392 -84547961 + (TG)n Simple_repeat Simple_repeat 1 29 0 530 343 64 53 chr1 158116412 158116965 -84547388 - L2 LINE L2 -164 3108 2544 1540 164 3 97 chr1 158117130 158117460 -84546893 - AluY SINE Alu -12 299 1 231 231 0 19 chr1 158117478 158117530 -84546823 + (TATG)n Simple_repeat Simple_repeat 2 52 0 393 175 26 88 chr1 158118206 158118320 -84546033 + L2 LINE L2 3203 3309 -4 236 360 53 0 chr1 158118511 158118625 -84545728 - L3 LINE CR1 -122 1455 1336 239 271 0 0 chr1 158118752 158118811 -84545542 + GA-rich Low_complexity Low_complexity 2 60 0 222 236 18 0 chr1 158118924 158118979 -84545374 + (CATA)n Simple_repeat Simple_repeat 3 58 0 536 245 58 0 chr1 158119367 158119522 -84544831 + MIR3 SINE MIR 3 166 -42 294 255 26 92 chr1 158119539 158119692 -84544661 - MLT1K LTR MaLR -10 578 436 429 122 0 0 chr1 158120283 158120357 -84543996 + (CA)n Simple_repeat Simple_repeat 2 75 0 1157 261 86 33 chr1 158120642 158121129 -84543224 - MLT1L LTR MaLR -29 586 74 1780 148 6 46 chr1 158121380 158121589 -84542764 - AluJb SINE Alu 0 312 119 2786 10 0 0 chr1 158121589 158121892 -84542461 + AluYa5 SINE Alu 1 303 -8 1780 148 6 46 chr1 158121892 158122007 -84542346 - AluJb SINE Alu -193 119 1 289 299 0 34 chr1 158122019 158122136 -84542217 + MIR SINE MIR 103 215 -47 2180 116 0 10 chr1 158122265 158122559 -84541794 - AluSg SINE Alu -19 291 1 393 329 20 71 chr1 158122942 158123278 -84541075 - L2 LINE L2 -220 3052 2694 290 289 47 39 chr1 158123324 158123452 -84540901 - L2 LINE L2 -882 2432 2304 200 141 47 59 chr1 158123547 158123632 -84540721 + (TTAAA)n Simple_repeat Simple_repeat 1 84 0 248 420 33 7 chr1 158124809 158125083 -84539270 - L2 LINE L2 -188 3084 2804 467 269 84 0 chr1 158125322 158125441 -84538912 + L2 LINE L2 3182 3310 -3 619 194 3 17 chr1 158125770 158125907 -84538446 - LTR16A LTR ERVL 0 481 343 415 327 114 50 chr1 158125907 158126565 -84537788 - L2 LINE L2 -1148 2166 1467 241 274 16 0 chr1 158126632 158126694 -84537659 + L2 LINE L2 3247 3309 -4 615 260 23 17 chr1 158126793 158126966 -84537387 + MER45A DNA AcHobo 4 177 -1 378 311 81 77 chr1 158127231 158127662 -84536691 - L2 LINE L2 -343 2971 2539 259 243 54 54 chr1 158127996 158128107 -84536246 - L1ME LINE L1 -5954 116 6 808 264 89 9 chr1 158128900 158129226 -84535127 + L1MEc LINE L1 823 1174 -5222 196 310 0 0 chr1 158129434 158129492 -84534861 - L2 LINE L2 -12 3301 3244 420 168 168 0 chr1 158129595 158129690 -84534663 + MER96 DNA MER1_type? 47 157 -18 22 35 0 0 chr1 158129690 158129719 -84534634 + AT_rich Low_complexity Low_complexity 1 29 0 220 374 46 53 chr1 158130002 158130133 -84534220 + L2 LINE L2 3072 3201 -71 457 200 58 17 chr1 158130150 158130190 -84534163 - L1MB4 LINE L1 0 6180 6143 4546 131 6 6 chr1 158130190 158130921 -84533432 - L1MA5A LINE L1 -3 6294 5564 457 200 58 17 chr1 158130921 158131000 -84533353 - L1MB4 LINE L1 -37 6143 6056 361 258 17 0 chr1 158132593 158132713 -84531640 + (TA)n Simple_repeat Simple_repeat 2 123 0 1073 221 23 0 chr1 158135172 158135389 -84528964 - MER58A DNA MER1_type -2 222 1 497 156 111 0 chr1 158136695 158136830 -84527523 - MER5C DNA MER1_type -2 322 173 45 19 0 0 chr1 158136857 158136909 -84527444 + AT_rich Low_complexity Low_complexity 1 52 0 2203 96 14 0 chr1 158137205 158137496 -84526857 - AluY SINE Alu -16 295 1 4331 71 13 30 chr1 158137498 158138106 -84526247 - L1PA7 LINE L1 0 6154 5557 540 336 34 20 chr1 158138298 158138706 -84525647 + L1MC/D LINE L1 5313 5726 -2082 2320 114 0 0 chr1 158138845 158139152 -84525201 + AluSg SINE Alu 1 307 -3 22 99 0 0 chr1 158140373 158140444 -84523909 + AT_rich Low_complexity Low_complexity 1 71 0 383 219 29 29 chr1 158140468 158140573 -84523780 - MIR SINE MIR -111 151 47 24 0 0 0 chr1 158140698 158140722 -84523631 + AT_rich Low_complexity Low_complexity 1 24 0 847 80 0 0 chr1 158140722 158140834 -84523519 - L1MA2 LINE L1 -6 6298 6187 342 370 39 35 chr1 158141396 158141540 -84522813 - MIR SINE MIR 0 262 115 1885 157 7 3 chr1 158141540 158141840 -84522513 + AluJb SINE Alu 1 301 -11 342 370 39 35 chr1 158141840 158141952 -84522401 - MIR SINE MIR -147 115 5 24 32 0 0 chr1 158142192 158142223 -84522130 + AT_rich Low_complexity Low_complexity 1 31 0 1118 221 82 8 chr1 158142377 158142753 -84521600 + Charlie4a DNA MER1_type 60 463 -45 526 254 65 14 chr1 158142988 158143126 -84521227 + MER5B DNA MER1_type 34 178 0 * 733 311 156 41 chr1 158143126 158143877 -84520476 - L2 LINE L2 -496 2818 1979 445 329 24 6 chr1 158144254 158144421 -84519932 - MIR SINE MIR -78 184 15 213 343 77 35 chr1 158144511 158144654 -84519699 - L3 LINE CR1 -713 864 716 182 316 134 59 chr1 158144902 158145155 -84519198 - L3 LINE CR1 -1182 395 124 678 231 62 20 chr1 158145578 158145773 -84518580 - MIR SINE MIR -11 251 49 2731 96 3 3 chr1 158145823 158146187 -84518166 + THE1B LTR MaLR 1 364 0 225 0 0 0 chr1 158146552 158146577 -84517776 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2097 110 0 4 chr1 158146577 158146858 -84517495 - AluSq SINE Alu -33 280 1 225 221 0 29 chr1 158147543 158147611 -84516742 - L1MEd LINE L1 -4863 1256 1191 665 254 97 45 chr1 158147652 158148116 -84516237 - L1MEd LINE L1 -5067 1052 565 545 254 35 66 chr1 158148558 158148755 -84515598 + MIR SINE MIR 47 237 -25 1044 299 53 15 chr1 158149719 158150130 -84514223 - LTR16A LTR ERVL -7 443 17 296 240 10 39 chr1 158150146 158150250 -84514103 - L2 LINE L2 -61 3252 3152 220 250 33 17 chr1 158150380 158150440 -84513913 - MIR SINE MIR -112 150 90 281 241 98 30 chr1 158150704 158150832 -84513521 - MIR SINE MIR -70 138 5 1057 257 56 41 chr1 158151335 158151802 -84512551 + MLT1L LTR MaLR 140 613 -2 344 385 115 9 chr1 158151957 158152183 -84512170 + MIR SINE MIR 7 256 -6 213 239 33 65 chr1 158152197 158152289 -84512064 + MIR SINE MIR 124 212 -50 280 301 36 0 chr1 158152868 158152951 -84511402 + MIR SINE MIR 51 136 -72 384 268 130 54 chr1 158153225 158153464 -84510889 + MLT1J2 LTR MaLR 188 444 -6 219 282 182 71 chr1 158153786 158153956 -84510397 - MIR3 SINE MIR 0 208 20 468 331 81 34 chr1 158154541 158154861 -84509492 - L2 LINE L2 -3 3269 2935 422 325 86 21 chr1 158154992 158155272 -84509081 - MLT1K LTR MaLR -87 501 204 3874 203 25 16 chr1 158155420 158156646 -84507707 + L1MB7 LINE L1 4938 6173 -11 392 208 28 19 chr1 158156661 158156767 -84507586 + L1MB5 LINE L1 5322 5428 -750 1986 129 14 0 chr1 158156778 158157072 -84507281 + AluSq SINE Alu 12 309 -4 288 130 0 0 chr1 158157075 158157121 -84507232 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 373 91 0 0 chr1 158157126 158157181 -84507172 + L1MB5 LINE L1 5416 5470 -714 552 72 0 0 chr1 158157181 158157285 -84507068 - AluY SINE Alu 0 317 214 3105 182 43 25 chr1 158157286 158157977 -84506376 + L1MB5 LINE L1 5460 6163 -11 204 322 109 27 chr1 158158045 158158228 -84506125 + L2 LINE L2 2764 2961 -353 * 432 321 30 15 chr1 158158221 158158355 -84505998 + L2 LINE L2 3137 3272 0 1334 149 0 33 chr1 158158954 158159196 -84505157 + MER46A DNA MER2_type 2 235 -1 2127 109 0 0 chr1 158159285 158159596 -84504757 - AluSx SINE Alu 0 311 1 217 257 27 40 chr1 158159677 158159751 -84504602 + MIR SINE MIR 81 153 -109 615 298 56 0 chr1 158161413 158161591 -84502762 + MIR SINE MIR 28 215 -47 4783 97 61 0 chr1 158161713 158162453 -84501900 + L1PA13 LINE L1 5370 6154 -9 1845 166 102 46 chr1 158162463 158162798 -84501555 + MLT1D LTR MaLR 13 381 -124 2325 67 0 17 chr1 158162798 158163098 -84501255 - AluY SINE Alu -16 295 1 1845 166 102 46 chr1 158163098 158163215 -84501138 + MLT1D LTR MaLR 381 490 -15 2028 148 0 3 chr1 158163232 158163530 -84500823 + AluSx SINE Alu 1 297 -15 1083 348 35 52 chr1 158163545 158164278 -84500075 + L2 LINE L2 2241 2961 -353 287 311 56 11 chr1 158164290 158164380 -84499973 + L2 LINE L2 3138 3231 -41 342 206 0 0 chr1 158164393 158164466 -84499887 + (TA)n Simple_repeat Simple_repeat 2 74 0 235 67 0 0 chr1 158164480 158164525 -84499828 - LTR66 LTR ERVL -171 439 395 1610 202 185 47 chr1 158164780 158165353 -84499000 + MLT1E1 LTR MaLR 2 653 -1 181 289 0 0 chr1 158165956 158166001 -84498352 + MIR SINE MIR 96 140 -68 182 247 235 12 chr1 158166059 158166144 -84498209 + MIR SINE MIR 156 259 -3 337 226 43 32 chr1 158166497 158166590 -84497763 + MIR SINE MIR 60 153 -109 459 233 162 23 chr1 158167662 158167928 -84496425 + L1M4 LINE L1 3093 3395 -2751 22 0 0 0 chr1 158167934 158167956 -84496397 + AT_rich Low_complexity Low_complexity 1 22 0 3010 52 3 0 chr1 158167956 158168338 -84496015 - L1PA4 LINE L1 -2 6153 5771 198 0 0 0 chr1 158168338 158168360 -84495993 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6307 25 0 0 chr1 158168360 158169088 -84495265 - L1PA3 LINE L1 -18 6137 5410 10415 37 1 0 chr1 158169088 158170798 -84493555 - L1PA4 LINE L1 -366 5788 4077 4789 35 0 0 chr1 158170798 158171398 -84492955 + L1PA4 LINE L1 3477 4076 -2070 430 301 5 21 chr1 158171403 158171589 -84492764 + L1M4 LINE L1 3403 3585 -2561 4014 285 25 35 chr1 158171605 158173263 -84491090 + L1PBa LINE L1 3 1644 -5219 * 5820 168 49 10 chr1 158173230 158176017 -84488336 + L1PBb LINE L1 8 2900 -3303 2638 193 47 16 chr1 158176022 158176659 -84487694 + L1ME1 LINE L1 5505 6161 -5 400 341 72 0 chr1 158176766 158176971 -84487382 - L1ME4a LINE L1 -238 5883 5694 2402 83 0 0 chr1 158176971 158176991 -84487362 - AluY SINE Alu -10 301 282 339 25 0 0 chr1 158176991 158177031 -84487322 + (TG)n Simple_repeat Simple_repeat 1 40 0 2402 83 0 0 chr1 158177031 158177311 -84487042 - AluY SINE Alu -28 283 1 400 341 72 0 chr1 158177311 158177480 -84486873 - L1ME4a LINE L1 -427 5694 5482 264 350 75 25 chr1 158178321 158178481 -84485872 + L2 LINE L2 3071 3238 -34 * 334 264 33 22 chr1 158178473 158178564 -84485789 + L2 LINE L2 2622 2713 -601 229 160 0 20 chr1 158178564 158178614 -84485739 - L1MC5 LINE L1 -919 7042 6994 831 298 30 18 chr1 158178666 158179059 -84485294 - L1MC4 LINE L1 -944 7098 6701 451 211 14 33 chr1 158179108 158179260 -84485093 + L1MC4 LINE L1 7094 7241 -728 354 264 118 47 chr1 158179258 158179669 -84484684 + L1MC5 LINE L1 7262 7577 -384 * 2553 74 0 0 chr1 158179755 158180065 -84484288 - AluY SINE Alu -1 310 1 304 275 30 21 chr1 158180170 158180336 -84484017 - L1ME LINE L1 -605 5516 5347 403 288 47 54 chr1 158181314 158181499 -84482854 - MIR SINE MIR -66 142 4 265 368 0 34 chr1 158181887 158182004 -84482349 + L2 LINE L2 2924 3036 -236 305 415 28 17 chr1 158182379 158182738 -84481615 + L2 LINE L2 1018 1380 -1934 194 204 0 82 chr1 158184300 158184349 -84480004 + L2 LINE L2 3186 3230 -42 645 272 108 78 chr1 158184417 158184984 -84479369 - MLT1H1 LTR MaLR 0 555 1 407 36 36 0 chr1 158186591 158186647 -84477706 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr1 158186774 158186795 -84477558 + AT_rich Low_complexity Low_complexity 1 21 0 2571 42 0 7 chr1 158187439 158187746 -84476607 + AluY SINE Alu 1 305 -6 439 354 36 31 chr1 158188574 158188769 -84475584 - MIR3 SINE MIR -10 198 3 2338 91 0 0 chr1 158188831 158189118 -84475235 + AluSc SINE Alu 1 287 -22 340 318 139 17 chr1 158190024 158190197 -84474156 - MIR SINE MIR -18 244 51 414 291 45 28 chr1 158190264 158190443 -84473910 + MIR SINE MIR 31 212 -50 374 209 0 15 chr1 158190875 158190942 -84473411 - MIR SINE MIR -127 81 16 507 233 113 0 chr1 158191055 158191188 -84473165 + MIR SINE MIR 76 223 -39 409 289 63 7 chr1 158193449 158193591 -84470762 + MIR SINE MIR 51 200 -62 245 70 47 0 chr1 158193592 158193635 -84470718 + (CATA)n Simple_repeat Simple_repeat 4 48 0 9256 102 9 2 chr1 158193692 158193811 -84470542 + HSMAR1 DNA Mariner 1 118 -1169 194 0 0 37 chr1 158193811 158193838 -84470515 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 9256 102 9 2 chr1 158193838 158194992 -84469361 + HSMAR1 DNA Mariner 118 1283 -4 551 330 31 5 chr1 158194992 158195186 -84469167 - MIR SINE MIR -13 249 51 480 260 62 20 chr1 158195384 158195530 -84468823 - L2 LINE L2 -4 3268 3117 207 337 12 12 chr1 158196028 158196111 -84468242 - L2 LINE L2 0 3313 3231 189 289 0 0 chr1 158196412 158196450 -84467903 + MIR SINE MIR 112 149 -59 1917 135 8 0 chr1 158196451 158196711 -84467642 + AluSx SINE Alu 39 300 -12 262 295 76 0 chr1 158197321 158197426 -84466927 - MIR SINE MIR -56 206 94 23 33 0 0 chr1 158197531 158197561 -84466792 + AT_rich Low_complexity Low_complexity 1 30 0 679 271 12 68 chr1 158197783 158197898 -84466455 - MIR SINE MIR -8 254 159 2243 100 3 0 chr1 158197898 158198189 -84466164 - AluSx SINE Alu -20 292 1 679 271 12 68 chr1 158198189 158198324 -84466029 - MIR SINE MIR -103 159 18 210 226 274 49 chr1 158199648 158199812 -84464541 + MIR SINE MIR 47 247 -15 184 170 19 75 chr1 158199784 158199837 -84464516 + L2 LINE L2 3264 3313 0 * 261 0 0 0 chr1 158200007 158200036 -84464317 + (TG)n Simple_repeat Simple_repeat 2 30 0 252 59 0 0 chr1 158200035 158200069 -84464284 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 438 286 133 30 chr1 158200534 158200768 -84463585 + MIR SINE MIR 2 259 -3 248 316 126 76 chr1 158201843 158202305 -84462048 - L2 LINE L2 -20 3293 2809 254 231 0 0 chr1 158202963 158203015 -84461338 + CT-rich Low_complexity Low_complexity 1 52 0 693 264 74 26 chr1 158203216 158203447 -84460906 - MIR SINE MIR -16 246 5 550 294 7 7 chr1 158205118 158205254 -84459099 + L2 LINE L2 3137 3272 0 571 217 65 14 chr1 158206183 158206321 -84458032 + MIR SINE MIR 20 164 -98 246 204 0 0 chr1 158206603 158206652 -84457701 + GA-rich Low_complexity Low_complexity 1 49 0 201 158 0 0 chr1 158208307 158208345 -84456008 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3346 73 0 2 chr1 158210211 158210651 -84453702 - L1PA8 LINE L1 -2 6170 5732 275 294 25 49 chr1 158210746 158210909 -84453444 + ERVL LTR ERVL 1284 1442 -4322 1384 263 40 8 chr1 158211088 158211468 -84452885 + MER119 DNA MER1_type 31 422 -161 990 204 38 0 chr1 158211469 158211709 -84452644 + MER119 DNA MER1_type 334 582 -1 204 40 0 0 chr1 158211772 158211797 -84452556 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 5027 114 1 10 chr1 158211797 158212586 -84451767 - L1PA10 LINE L1 -21 6147 5366 12035 129 17 8 chr1 158212588 158214651 -84449702 + L1PA10 LINE L1 3278 5358 -788 272 371 39 22 chr1 158214851 158215215 -84449138 + ERVL LTR ERVL 2680 3049 -2715 687 277 62 66 chr1 158215598 158216498 -84447855 + L1MEd LINE L1 641 1572 -4738 365 262 50 9 chr1 158216965 158217184 -84447169 + ERVL LTR ERVL 3384 3612 -2042 239 0 32 0 chr1 158217547 158217578 -84446775 + (TTG)n Simple_repeat Simple_repeat 2 33 0 12735 181 19 6 chr1 158218561 158220820 -84443533 - L1PB1 LINE L1 -1 6150 3818 222 37 0 0 chr1 158220820 158220847 -84443506 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 12735 181 19 6 chr1 158220847 158222455 -84441898 - L1PB1 LINE L1 -2333 3818 2233 646 327 44 18 chr1 158222455 158222840 -84441513 + ERVL LTR ERVL 4086 4480 -1284 204 40 0 0 chr1 158223758 158223783 -84440570 + (TAA)n Simple_repeat Simple_repeat 2 26 0 565 224 40 0 chr1 158224933 158225058 -84439295 + FLAM_A SINE Alu 1 130 -3 32 0 0 0 chr1 158225058 158225090 -84439263 + AT_rich Low_complexity Low_complexity 1 32 0 2016 143 7 7 chr1 158225109 158225416 -84438937 - AluSx SINE Alu -5 307 1 197 369 90 21 chr1 158225441 158225953 -84438400 + L2 LINE L2 565 1111 -2203 214 388 40 45 chr1 158226013 158226237 -84438116 + L2 LINE L2 1343 1565 -1749 22 70 0 0 chr1 158226265 158226308 -84438045 + AT_rich Low_complexity Low_complexity 1 43 0 477 266 167 15 chr1 158226421 158226648 -84437705 - MIR SINE MIR -2 260 3 546 16 0 0 chr1 158227456 158227519 -84436834 + (TG)n Simple_repeat Simple_repeat 1 63 0 205 167 28 0 chr1 158228200 158228236 -84436117 + MER5A DNA MER1_type 46 82 -107 659 247 6 0 chr1 158228246 158228416 -84435937 - MER58B DNA MER1_type -4 337 167 2518 215 63 34 chr1 158228430 158229193 -84435160 + L1MC4 LINE L1 7214 7998 -44 1542 204 60 20 chr1 158229292 158229695 -84434658 + HsTC2 DNA Tc2 516 934 -964 727 251 148 0 chr1 158229696 158229987 -84434366 - MER69 DNA AcHobo -2 2524 2191 246 265 29 0 chr1 158229983 158230051 -84434302 - MER69 DNA AcHobo -2456 70 1 * 445 285 80 10 chr1 158230056 158230256 -84434097 + HsTC2 DNA Tc2 932 1145 -753 465 201 183 6 chr1 158230259 158230423 -84433930 + HsTC2 DNA Tc2 1691 1883 -15 488 308 73 26 chr1 158230838 158231072 -84433281 + L3 LINE CR1 1137 1381 -196 202 283 17 0 chr1 158231095 158231155 -84433198 + L2 LINE L2 3253 3313 0 835 217 131 12 chr1 158231285 158231484 -84432869 - MIR SINE MIR -31 231 15 295 337 11 0 chr1 158232348 158232437 -84431916 - MIR SINE MIR -166 96 7 406 361 13 0 chr1 158233040 158233198 -84431155 + L3 LINE CR1 1296 1455 -122 627 262 28 0 chr1 158233824 158233969 -84430384 - MIR3 SINE MIR -3 205 57 186 43 0 0 chr1 158234263 158234286 -84430067 + (TG)n Simple_repeat Simple_repeat 2 24 0 396 267 84 30 chr1 158234648 158234779 -84429574 - MIR SINE MIR -6 256 119 475 156 11 11 chr1 158235071 158235161 -84429192 + L1MA4 LINE L1 6183 6272 -28 317 259 83 19 chr1 158235223 158235331 -84429022 - L1ME LINE L1 -283 5838 5724 451 200 48 0 chr1 158235339 158235444 -84428909 - FRAM SINE Alu -2 174 65 354 323 47 34 chr1 158236005 158236240 -84428113 - L1MC4a LINE L1 -1848 5960 5723 228 267 244 59 chr1 158236485 158236620 -84427733 + MIR3 SINE MIR 10 169 -39 279 79 0 0 chr1 158236678 158236716 -84427637 + (TG)n Simple_repeat Simple_repeat 2 39 0 239 266 57 81 chr1 158237584 158237708 -84426645 - L2 LINE L2 0 3272 3152 390 21 0 0 chr1 158237732 158237779 -84426574 + (TG)n Simple_repeat Simple_repeat 1 47 0 1638 214 71 50 chr1 158237897 158238392 -84425961 - MLT1D LTR MaLR 0 505 1 19605 93 13 3 chr1 158238406 158242066 -84422287 - L1PA7 LINE L1 0 6154 2467 255 352 78 41 chr1 158242185 158242328 -84422025 + MIR SINE MIR 30 185 -77 3255 132 56 6 chr1 158242328 158242829 -84421524 - MER1A DNA MER1_type 0 527 2 255 352 78 41 chr1 158242829 158242904 -84421449 + MIR SINE MIR 185 256 -6 199 339 0 0 chr1 158242986 158243051 -84421302 - L2 LINE L2 -2 3270 3206 297 282 139 53 chr1 158244241 158244486 -84419867 - L2 LINE L2 0 3272 3007 1127 147 18 49 chr1 158245700 158245925 -84418428 + MER20 DNA MER1_type 2 219 0 521 184 150 7 chr1 158246184 158246331 -84418022 - LTR33A LTR ERVL -62 461 294 2094 79 0 0 chr1 158246526 158246779 -84417574 + AluSc SINE Alu 1 253 -56 796 235 78 25 chr1 158246883 158247087 -84417266 + MLT1J LTR MaLR 229 443 -68 1985 143 23 3 chr1 158247107 158247408 -84416945 - AluSx SINE Alu -5 307 1 984 207 17 6 chr1 158247759 158247938 -84416415 - MER5A DNA MER1_type 0 189 9 662 206 8 0 chr1 158249803 158249934 -84414419 + FLAM_C SINE Alu 1 132 -11 486 0 0 0 chr1 158250243 158250297 -84414056 + (CA)n Simple_repeat Simple_repeat 2 55 0 1168 161 0 11 chr1 158250398 158250578 -84413775 - AluJo SINE Alu -1 311 134 21 0 0 0 chr1 158250787 158250808 -84413545 + AT_rich Low_complexity Low_complexity 1 21 0 480 276 142 71 chr1 158250958 158251272 -84413081 - MLT1H1 LTR MaLR 0 555 195 1185 142 0 11 chr1 158251272 158251462 -84412891 + L1PA16 LINE L1 5969 6156 -10 480 276 142 71 chr1 158251462 158251672 -84412681 - MLT1H1 LTR MaLR -360 195 1 219 125 62 16 chr1 158251731 158251795 -84412558 + (TA)n Simple_repeat Simple_repeat 1 67 0 745 225 12 6 chr1 158251802 158251971 -84412382 + MLT1J1 LTR MaLR 1 170 -276 3160 248 83 77 chr1 158251979 158253691 -84410662 - L1MC4a LINE L1 -651 7157 5435 1398 189 100 24 chr1 158253724 158254104 -84410249 + L1MA9 LINE L1 5866 6274 -38 209 132 26 0 chr1 158254107 158254145 -84410208 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 158254481 158254502 -84409851 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr1 158255096 158255137 -84409216 + (TG)n Simple_repeat Simple_repeat 2 42 0 350 267 20 34 chr1 158256511 158256657 -84407696 + L1ME4a LINE L1 5754 5897 -224 271 246 104 22 chr1 158256691 158256825 -84407528 + L1ME4a LINE L1 5974 6118 -3 563 89 22 0 chr1 158257228 158257318 -84407035 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 387 0 0 0 chr1 158257416 158257459 -84406894 + (CA)n Simple_repeat Simple_repeat 2 44 0 303 284 23 11 chr1 158258144 158258232 -84406121 - MIR SINE MIR -1 261 173 266 215 127 13 chr1 158258522 158258601 -84405752 - MIR SINE MIR -112 150 63 350 270 171 0 chr1 158259046 158259157 -84405196 - L2 LINE L2 -1 3271 3142 835 141 0 30 chr1 158259316 158259451 -84404902 - AluJo SINE Alu -181 131 1 1643 184 7 26 chr1 158259651 158259956 -84404397 + AluJo SINE Alu 1 299 -13 199 352 24 24 chr1 158260229 158260354 -84403999 - MIR SINE MIR -57 205 81 258 32 0 0 chr1 158261427 158261458 -84402895 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 184 294 0 0 chr1 158261628 158261679 -84402674 + MIR3 SINE MIR 155 205 -3 1915 171 0 9 chr1 158261707 158262022 -84402331 - AluJb SINE Alu 0 312 1 2530 203 30 60 chr1 158262156 158262801 -84401552 + MLT1E2 LTR MaLR 1 625 -1 1982 157 47 14 chr1 158263520 158263883 -84400470 + THE1C LTR MaLR 1 375 0 202 300 221 0 chr1 158264640 158264780 -84399573 + MIR SINE MIR 49 219 -43 * 854 265 97 54 chr1 158264759 158265261 -84399092 + L2 LINE L2 2773 3295 -18 416 348 25 25 chr1 158265634 158265795 -84398558 + MIR SINE MIR 13 173 -89 1796 189 17 7 chr1 158266210 158266507 -84397846 + AluJo SINE Alu 1 300 -12 2030 140 119 58 chr1 158266776 158266805 -84397548 + LTR54 LTR ERV1 3 29 -481 2162 108 0 0 chr1 158266805 158267084 -84397269 + AluSc SINE Alu 1 279 -30 2030 140 119 58 chr1 158267084 158267533 -84396820 + LTR54 LTR ERV1 29 510 0 370 323 100 8 chr1 158268963 158269093 -84395260 + L2 LINE L2 2617 2758 -556 664 299 35 106 chr1 158269116 158269476 -84394877 + L2 LINE L2 2863 3182 -131 1813 191 18 0 chr1 158269476 158269811 -84394542 - MER58B DNA MER1_type 0 341 1 664 299 35 106 chr1 158269811 158269931 -84394422 + L2 LINE L2 3182 3309 -4 1363 205 80 52 chr1 158270784 158270861 -84393492 + Charlie4a DNA MER1_type 18 91 -1870 1843 156 135 26 chr1 158270861 158271246 -84393107 - MSTA LTR MaLR 0 428 2 1363 205 80 52 chr1 158271246 158271646 -84392707 + Charlie4a DNA MER1_type 91 508 0 4353 182 28 46 chr1 158273131 158273922 -84390431 + L1MA9 LINE L1 3859 4663 -1649 2174 135 0 0 chr1 158273922 158274218 -84390135 - AluSx SINE Alu -11 301 6 4353 182 28 46 chr1 158274218 158275392 -84388961 + L1MA9 LINE L1 4658 5768 -539 712 135 15 8 chr1 158275392 158275513 -84388840 + L1MA9 LINE L1 6179 6312 0 1089 292 55 53 chr1 158275775 158276264 -84388089 + L3 LINE CR1 1082 1571 -6 207 245 0 0 chr1 158277297 158277350 -84387003 - L2 LINE L2 0 3313 3261 27373 106 33 68 chr1 158277356 158283734 -84380619 - L1PA7 LINE L1 -1 6153 13 181 328 0 35 chr1 158283765 158283823 -84380530 - L2 LINE L2 -66 3247 3192 475 187 82 32 chr1 158284261 158284408 -84379945 + MIR SINE MIR 63 215 -47 283 237 0 107 chr1 158285413 158285544 -84378809 + MER5A DNA MER1_type 1 117 -72 1038 281 177 18 chr1 158286296 158286893 -84377460 - L2 LINE L2 -200 3113 2420 26 30 0 0 chr1 158286903 158286936 -84377417 + AT_rich Low_complexity Low_complexity 1 33 0 426 262 27 57 chr1 158287367 158287630 -84376723 + L1MC5 LINE L1 7317 7571 -390 1489 113 92 0 chr1 158287677 158287985 -84376368 + Tigger4(Zombi) DNA MER2_type 2 2731 0 213 60 0 90 chr1 158287994 158288061 -84376292 + (GAA)n Simple_repeat Simple_repeat 2 62 0 226 259 19 0 chr1 158289220 158289274 -84375079 + MIR SINE MIR 201 255 -7 565 298 6 0 chr1 158289292 158289460 -84374893 + L1ME3A LINE L1 5997 6165 -5 313 343 36 43 chr1 158289883 158290023 -84374330 + L2 LINE L2 3134 3272 0 2491 150 56 2 chr1 158290949 158291410 -84372943 - L1MB8 LINE L1 -5 6173 5688 542 334 87 29 chr1 158291418 158291762 -84372591 - L3 LINE CR1 -7 1570 1207 185 314 39 0 chr1 158291762 158291813 -84372540 + L3 LINE CR1 1518 1570 -7 649 275 88 82 chr1 158291932 158292386 -84371967 + MLT1K LTR MaLR 124 580 -8 209 173 19 58 chr1 158292507 158292559 -84371794 - L3 LINE CR1 -605 972 923 * 228 227 0 0 chr1 158292547 158292591 -84371762 + MIR SINE MIR 207 250 -12 546 310 47 50 chr1 158293384 158293548 -84370805 + Charlie2 DNA MER1_type 1 165 -2617 2884 3 0 0 chr1 158293548 158293858 -84370495 - AluYa5 SINE Alu -1 310 1 546 310 47 50 chr1 158293858 158294012 -84370341 + Charlie2 DNA MER1_type 165 318 -2464 910 224 222 11 chr1 158294023 158294456 -84369897 + Charlie2 DNA MER1_type 1859 2382 -480 441 269 110 0 chr1 158294476 158294621 -84369732 - L1ME LINE L1 -5649 421 261 379 267 15 8 chr1 158294868 158294999 -84369354 + Charlie2 DNA MER1_type 2690 2821 -41 455 309 16 62 chr1 158296067 158296261 -84368092 + L3 LINE CR1 1309 1493 -84 * 588 228 47 20 chr1 158296240 158296388 -84367965 - MER5A DNA MER1_type -30 148 1 521 319 24 12 chr1 158296424 158296593 -84367760 + MIR SINE MIR 1 171 -91 207 0 0 0 chr1 158297008 158297031 -84367322 + (A)n Simple_repeat Simple_repeat 1 23 0 192 398 37 0 chr1 158297680 158297788 -84366565 - L2 LINE L2 -3 3269 3158 386 323 91 27 chr1 158298555 158298607 -84365746 - MIR SINE MIR -6 256 209 2033 178 23 16 chr1 158298607 158298994 -84365359 + MLT1B LTR MaLR 1 390 0 386 323 91 27 chr1 158298994 158299127 -84365226 - MIR SINE MIR -53 209 59 359 267 48 0 chr1 158300868 158300973 -84363380 + L2 LINE L2 2965 3074 -239 285 369 0 9 chr1 158300960 158301071 -84363282 + L2 LINE L2 3203 3312 -1 * 398 338 91 30 chr1 158301582 158301943 -84362410 + L2 LINE L2 2854 3236 -36 352 289 151 36 chr1 158301979 158302145 -84362208 - L2 LINE L2 0 3313 3129 180 158 0 0 chr1 158302260 158302298 -84362055 + (CA)n Simple_repeat Simple_repeat 1 38 0 193 229 98 0 chr1 158303888 158303949 -84360404 - MIR SINE MIR 0 262 196 281 245 10 31 chr1 158304621 158304719 -84359634 + GA-rich Low_complexity Low_complexity 4 99 0 395 269 67 15 chr1 158304856 158304990 -84359363 - MER5A DNA MER1_type -1 188 48 181 329 27 14 chr1 158305231 158305304 -84359049 + MIR3 SINE MIR 110 183 -25 1522 187 26 7 chr1 158305456 158305573 -84358780 + AluJo SINE Alu 1 114 -198 393 39 0 0 chr1 158305573 158305624 -84358729 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1522 187 26 7 chr1 158305624 158305811 -84358542 + AluJo SINE Alu 114 311 -1 2378 104 6 11 chr1 158306056 158306412 -84357941 - L1PA13 LINE L1 -4 6159 5806 241 238 111 16 chr1 158306727 158306790 -84357563 + L2 LINE L2 3204 3272 0 1930 121 0 51 chr1 158306946 158307261 -84357092 + AluSx SINE Alu 1 299 -13 2097 184 2 30 chr1 158307873 158308274 -84356079 - MLT1B LTR MaLR 0 390 1 1809 169 13 3 chr1 158308722 158309024 -84355329 + AluJb SINE Alu 1 305 -7 846 157 17 11 chr1 158309047 158309225 -84355128 + GA-rich Low_complexity Low_complexity 2 180 0 679 138 5 53 chr1 158309243 158309431 -84354922 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 314 133 67 95 chr1 158309541 158309646 -84354707 - MLT1G LTR MaLR 0 590 489 6582 154 11 12 chr1 158359646 158361720 -84302633 + L1MA4 LINE L1 4221 6294 -6 259 285 171 16 chr1 158361930 158362053 -84302300 + MIR SINE MIR 119 260 -2 3412 123 0 8 chr1 158362334 158362820 -84301533 + L1PA15 LINE L1 5683 6164 -1 965 293 78 12 chr1 158362825 158363256 -84301097 - L2 LINE L2 -255 3058 2593 457 257 9 0 chr1 158363322 158363431 -84300922 - MER69A DNA AcHobo -67 110 1 214 272 89 89 chr1 158363632 158363845 -84300508 + L2 LINE L2 2681 2893 -421 462 315 123 20 chr1 158364048 158364251 -84300102 + MIR SINE MIR 26 249 -13 217 293 71 40 chr1 158364281 158364380 -84299973 + L2 LINE L2 3211 3312 -1 366 322 62 27 chr1 158365085 158365231 -84299122 + MIR SINE MIR 26 176 -86 979 265 78 68 chr1 158365253 158365830 -84298523 - MLT1G LTR MaLR -7 583 1 595 344 44 4 chr1 158366033 158366283 -84298070 - MIR SINE MIR 0 262 3 560 256 8 0 chr1 158367220 158367341 -84297012 - L2 LINE L2 -6 3307 3186 1295 253 146 36 chr1 158368229 158368763 -84295590 - MLT1L LTR MaLR -7 608 16 196 200 114 100 chr1 158369117 158369257 -84295096 - MIR3 SINE MIR -1 207 66 203 292 100 39 chr1 158370194 158370324 -84294029 - MIR SINE MIR -62 200 63 1300 206 21 94 chr1 158370557 158370930 -84293423 - MLT1A1 LTR MaLR 0 365 20 2011 190 63 25 chr1 158371654 158372096 -84292257 + LTR2B LTR ERV1 32 490 0 198 395 83 18 chr1 158372614 158372723 -84291630 + L2 LINE L2 3137 3252 -20 1930 161 0 22 chr1 158373197 158373514 -84290839 - AluJo SINE Alu 0 312 3 419 314 115 69 chr1 158373516 158373908 -84290445 + L2 LINE L2 2832 3241 -31 697 142 124 0 chr1 158373931 158374044 -84290309 - AluSg/x SINE Alu -16 294 168 1089 81 0 0 chr1 158374873 158375022 -84289331 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 252 0 0 0 chr1 158375051 158375079 -84289274 + (TC)n Simple_repeat Simple_repeat 1 28 0 1002 195 25 17 chr1 158375079 158375315 -84289038 - AluJo SINE Alu 0 312 75 586 264 57 11 chr1 158375558 158375748 -84288605 + MIR SINE MIR 60 260 -2 242 327 168 0 chr1 158376282 158376389 -84287964 + L2 LINE L2 3148 3272 0 1053 181 181 78 chr1 158376533 158376941 -84287412 - LTR7 LTR ERV1 0 450 1 2659 154 35 12 chr1 158377306 158377728 -84286625 + MSTB1 LTR MaLR 1 432 0 513 262 8 0 chr1 158377768 158377890 -84286463 - MLT1L LTR MaLR -10 605 483 633 250 44 52 chr1 158378036 158378284 -84286069 - MLT1L LTR MaLR -369 246 1 183 80 0 0 chr1 158378756 158378781 -84285572 + (T)n Simple_repeat Simple_repeat 1 25 0 2075 176 2 35 chr1 158379065 158379463 -84284890 + MLT1B LTR MaLR 6 390 0 292 342 40 35 chr1 158380144 158380343 -84284010 + MIR SINE MIR 40 239 -23 276 200 0 0 chr1 158381251 158381311 -84283042 + GA-rich Low_complexity Low_complexity 3 62 0 1777 264 60 9 chr1 158381419 158381873 -84282480 + MLT1H1 LTR MaLR 71 547 -8 1020 306 146 8 chr1 158382156 158382778 -84281575 + L1ME4a LINE L1 5410 6117 -4 2913 230 55 71 chr1 158383170 158384380 -84279973 + L1ME2 LINE L1 3 1332 -5208 1686 161 3 33 chr1 158384382 158384687 -84279666 - AluJo SINE Alu -16 296 1 2217 191 83 23 chr1 158384745 158385216 -84279137 - MLT1D LTR MaLR -2 503 5 569 208 25 64 chr1 158385221 158385463 -84278890 - MLT1D-int LTR MaLR -8 1724 1237 834 226 0 0 chr1 158385470 158385638 -84278715 + FRAM SINE Alu 1 168 -8 428 168 98 210 chr1 158385638 158385852 -84278501 - MLT1D-int LTR MaLR -223 1148 959 1585 234 82 81 chr1 158385954 158386608 -84277745 + L1ME2 LINE L1 3848 4500 -2040 189 0 0 0 chr1 158386608 158386629 -84277724 + (GAAA)n Simple_repeat Simple_repeat 4 24 0 1585 234 82 81 chr1 158386629 158386657 -84277696 + L1ME2 LINE L1 4500 4526 -2014 470 117 156 0 chr1 158386657 158386734 -84277619 + 5S rRNA rRNA 1 89 -32 1585 234 82 81 chr1 158386734 158387022 -84277331 + L1ME2 LINE L1 4526 4902 -1638 1573 241 81 19 chr1 158387017 158387536 -84276817 + L1ME2 LINE L1 5165 5715 -825 * 1811 150 0 25 chr1 158387536 158387845 -84276508 + AluJb SINE Alu 13 314 0 3582 215 60 19 chr1 158387848 158388638 -84275715 - MER21B LTR ERV1 -30 833 12 795 82 9 9 chr1 158388662 158388772 -84275581 + L1MD2 LINE L1 6249 6358 -1 342 251 74 70 chr1 158388781 158389013 -84275340 + Charlie8 DNA MER1_type 106 276 -2141 336 289 77 32 chr1 158389484 158389640 -84274713 - MIR SINE MIR -41 221 59 807 232 19 58 chr1 158390260 158390519 -84273834 + MIR SINE MIR 13 261 -1 348 138 0 0 chr1 158390561 158390626 -84273727 + (TGG)n Simple_repeat Simple_repeat 1 65 0 22 0 0 0 chr1 158390735 158390757 -84273596 + AT_rich Low_complexity Low_complexity 1 22 0 1456 144 41 82 chr1 158390892 158391183 -84273170 - AluSx SINE Alu -11 301 23 2385 77 3 0 chr1 158391319 158391616 -84272737 + AluSc SINE Alu 1 298 -11 1969 146 3 37 chr1 158391885 158392208 -84272145 - AluSx SINE Alu 0 312 1 288 111 0 0 chr1 158393059 158393104 -84271249 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr1 158393478 158393506 -84270847 + AT_rich Low_complexity Low_complexity 1 28 0 2038 135 24 3 chr1 158393833 158394130 -84270223 + AluSx SINE Alu 1 303 -9 416 246 98 0 chr1 158394135 158394257 -84270096 + L1ME2 LINE L1 5827 5960 -596 2044 116 4 0 chr1 158394257 158394559 -84269794 - AluSx SINE Alu 0 315 13 1380 127 0 28 chr1 158394559 158394771 -84269582 + AluSg/x SINE Alu 95 300 -10 1732 184 193 25 chr1 158394771 158395249 -84269104 + L1ME2 LINE L1 5992 6549 -9 522 205 16 16 chr1 158395282 158395409 -84268944 + L1MB8 LINE L1 6036 6162 -16 769 251 106 70 chr1 158395412 158395957 -84268396 + L1ME4a LINE L1 5476 6040 -81 2403 153 59 61 chr1 158396483 158396994 -84267359 + LTR54 LTR ERV1 1 510 0 310 295 76 9 chr1 158397218 158397323 -84267030 - MIR3 SINE MIR -54 154 43 494 356 5 11 chr1 158397364 158397555 -84266798 + MIR3 SINE MIR 16 205 -3 666 148 0 30 chr1 158398842 158398943 -84265410 + FLAM_A SINE Alu 18 145 0 271 0 0 0 chr1 158398943 158398973 -84265380 + (TAA)n Simple_repeat Simple_repeat 2 180 0 293 77 39 0 chr1 158399141 158399193 -84265160 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 1568 170 4 8 chr1 158399199 158399458 -84264895 - AluJo SINE Alu -15 297 40 229 271 86 100 chr1 158399644 158399784 -84264569 - MIR3 SINE MIR -63 145 8 204 40 0 0 chr1 158399961 158399986 -84264367 + (T)n Simple_repeat Simple_repeat 1 25 0 251 221 12 23 chr1 158400426 158400512 -84263841 - L1ME LINE L1 -270 5896 5812 204 40 0 0 chr1 158400520 158400545 -84263808 + (T)n Simple_repeat Simple_repeat 1 25 0 608 213 50 59 chr1 158401471 158401692 -84262661 + L1ME1 LINE L1 5812 6030 -136 727 174 14 0 chr1 158401692 158401830 -84262523 + L1MA10 LINE L1 6181 6320 -14 364 193 0 152 chr1 158401843 158401930 -84262423 - MER5B DNA MER1_type -64 125 50 748 203 0 0 chr1 158401930 158402058 -84262295 + FLAM_A SINE Alu 2 129 -4 364 193 0 152 chr1 158402058 158402095 -84262258 - MER5B DNA MER1_type -139 50 9 183 274 16 16 chr1 158402096 158402158 -84262195 - L2 LINE L2 -505 2809 2748 521 307 43 6 chr1 158402782 158402945 -84261408 + MIR SINE MIR 24 192 -70 2874 187 62 10 chr1 158402981 158403565 -84260788 + MER90 LTR ERV1 1 614 0 237 158 0 0 chr1 158403633 158403671 -84260682 - L2 LINE L2 -95 3177 3140 265 69 0 103 chr1 158404620 158404678 -84259675 + L1PA13 LINE L1 6110 6161 -2 183 253 147 0 chr1 158406330 158406405 -84257948 + MIR SINE MIR 66 151 -111 398 225 9 0 chr1 158406445 158406556 -84257797 + CT-rich Low_complexity Low_complexity 1 112 0 366 259 54 9 chr1 158407092 158407204 -84257149 + L2 LINE L2 3156 3272 0 322 279 64 7 chr1 158407627 158407767 -84256586 + MIR SINE MIR 82 229 -33 869 220 6 6 chr1 158407984 158408161 -84256192 - MER45A DNA AcHobo 0 178 2 200 229 0 0 chr1 158408643 158408691 -84255662 + MIR3 SINE MIR 159 206 -2 1753 142 0 0 chr1 158408751 158409004 -84255349 + AluSq SINE Alu 1 253 -60 31 0 0 0 chr1 158409072 158409103 -84255250 + AT_rich Low_complexity Low_complexity 1 31 0 204 135 81 0 chr1 158409103 158409251 -84255102 + (TA)n Simple_repeat Simple_repeat 2 161 0 385 144 33 61 chr1 158409251 158409431 -84254922 + (TTATA)n Simple_repeat Simple_repeat 3 177 0 251 78 50 67 chr1 158409445 158409624 -84254729 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 274 263 201 57 chr1 158410011 158410205 -84254148 + MIR SINE MIR 22 243 -19 1015 291 90 29 chr1 158411416 158411860 -84252493 + MLT1J LTR MaLR 3 473 -38 758 190 171 0 chr1 158412250 158412408 -84251945 - MER5A DNA MER1_type -3 186 2 206 277 158 10 chr1 158412588 158412689 -84251664 - L2 LINE L2 -4 3309 3194 253 324 45 9 chr1 158413232 158413343 -84251010 - L2 LINE L2 -4 3268 3154 272 333 39 45 chr1 158414430 158414586 -84249767 - MER5A DNA MER1_type 0 189 24 283 224 15 0 chr1 158414661 158414728 -84249625 - L2 LINE L2 -1 3271 3204 217 175 0 88 chr1 158414922 158414979 -84249374 - L2 LINE L2 -337 2977 2926 1221 230 119 33 chr1 158415717 158416138 -84248215 + MLT1J LTR MaLR 53 509 -2 3066 64 8 0 chr1 158417475 158417863 -84246490 + L1PA7 LINE L1 5764 6154 0 347 49 0 0 chr1 158417879 158417920 -84246433 + LTR23 LTR ERV1 320 360 -77 202 139 28 0 chr1 158417928 158417964 -84246389 + A-rich Low_complexity Low_complexity 5 41 0 1747 185 13 3 chr1 158418025 158418333 -84246020 + AluJb SINE Alu 1 311 -1 253 247 177 32 chr1 158418385 158418543 -84245810 + L2 LINE L2 2920 3100 -172 191 402 0 0 chr1 158418879 158418966 -84245387 + L2 LINE L2 3186 3272 0 365 258 152 20 chr1 158419136 158419287 -84245066 + MIR SINE MIR 5 175 -87 552 318 175 10 chr1 158420817 158421223 -84243130 + L3 LINE CR1 1005 1477 -100 366 280 147 0 chr1 158423762 158423912 -84240441 - MIR SINE MIR -16 246 75 22 35 0 0 chr1 158426130 158426159 -84238194 + GC_rich Low_complexity Low_complexity 1 29 0 233 29 29 0 chr1 158426474 158426508 -84237845 + (CCG)n Simple_repeat Simple_repeat 2 36 0 273 98 0 0 chr1 158427750 158427791 -84236562 + (CAT)n Simple_repeat Simple_repeat 1 41 0 183 80 0 0 chr1 158429086 158429111 -84235242 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 218 214 0 18 chr1 158429875 158429931 -84234422 + CT-rich Low_complexity Low_complexity 2 56 0 223 350 32 19 chr1 158431580 158431737 -84232616 + MIR3 SINE MIR 31 189 -19 194 259 25 49 chr1 158431876 158431957 -84232396 + MIR SINE MIR 36 114 -94 2247 124 0 3 chr1 158432934 158433232 -84231121 - AluSx SINE Alu -15 297 1 752 168 15 0 chr1 158434608 158434739 -84229614 + FLAM_C SINE Alu 1 133 -10 2370 74 23 7 chr1 158434775 158435074 -84229279 + AluY SINE Alu 1 304 -7 2439 99 0 0 chr1 158435202 158435514 -84228839 - AluSx SINE Alu 0 312 1 236 345 0 0 chr1 158435903 158435987 -84228366 + (CA)n Simple_repeat Simple_repeat 1 84 0 2307 108 0 6 chr1 158436434 158436749 -84227604 + AluSq SINE Alu 1 313 0 266 329 0 0 chr1 158438502 158438584 -84225769 + (TATG)n Simple_repeat Simple_repeat 2 83 0 531 184 10 39 chr1 158439545 158439648 -84224705 - Tigger5 DNA MER2_type 0 2323 2224 287 222 19 0 chr1 158439642 158439696 -84224657 - Tigger5 DNA MER2_type -2268 55 1 * 2268 119 3 0 chr1 158440801 158441112 -84223241 - AluSx SINE Alu 0 312 1 885 132 0 22 chr1 158442620 158442756 -84221597 - FLAM_C SINE Alu 0 133 1 281 333 48 19 chr1 158443135 158443240 -84221113 - MER5A DNA MER1_type -44 145 38 730 147 28 142 chr1 158443376 158443451 -84220902 + MER53 DNA DNA 3 85 -104 252 120 0 0 chr1 158443451 158443501 -84220852 + (TA)n Simple_repeat Simple_repeat 1 50 0 2324 97 14 0 chr1 158443503 158443792 -84220561 - AluSx SINE Alu -19 293 1 730 147 28 142 chr1 158443792 158443924 -84220429 + MER53 DNA DNA 86 189 0 428 298 63 13 chr1 158444392 158444550 -84219803 + MIR SINE MIR 26 191 -71 1994 150 0 16 chr1 158445558 158445872 -84218481 + AluJb SINE Alu 2 310 -2 1165 168 10 5 chr1 158446381 158446583 -84217770 + AluJo SINE Alu 87 289 -23 255 189 153 54 chr1 158450251 158450362 -84213991 + Charlie8 DNA MER1_type 38 159 -2258 2284 80 30 7 chr1 158450373 158450673 -84213680 + AluSg SINE Alu 2 308 -2 228 35 0 0 chr1 158451885 158451914 -84212439 + (T)n Simple_repeat Simple_repeat 1 29 0 330 223 10 97 chr1 158454021 158454124 -84210229 - L2 LINE L2 -31 3282 3189 526 243 192 14 chr1 158454442 158454734 -84209619 - MER113 DNA MER1_type? -170 351 8 1336 174 58 58 chr1 158454759 158455070 -84209283 + AluJo SINE Alu 1 311 -1 193 216 20 20 chr1 158456296 158456347 -84208006 - L2 LINE L2 -1 3271 3221 188 238 48 0 chr1 158456718 158456760 -84207593 + MER5B DNA MER1_type 89 132 -46 711 218 42 0 chr1 158457050 158457192 -84207161 + MER45A DNA AcHobo 1 148 -30 2330 104 10 0 chr1 158457894 158458203 -84206150 + AluSx SINE Alu 1 312 0 1850 149 0 30 chr1 158458293 158458589 -84205764 + AluJo SINE Alu 1 287 -25 21 0 0 0 chr1 158459081 158459102 -84205251 + AT_rich Low_complexity Low_complexity 1 21 0 266 323 54 8 chr1 158459131 158459261 -84205092 - MIR SINE MIR -48 214 79 847 275 50 17 chr1 158459290 158459530 -84204823 + MIR SINE MIR 15 262 0 1205 226 61 37 chr1 158459668 158460128 -84204225 + L1MC4 LINE L1 7567 8037 -5 417 283 84 6 chr1 158460157 158460315 -84204038 + MIR3 SINE MIR 15 184 -62 582 269 11 44 chr1 158460657 158460839 -84203514 - MER5B DNA MER1_type -2 176 1 492 324 114 6 chr1 158461807 158461983 -84202370 - MIR SINE MIR -60 202 8 347 340 92 20 chr1 158462437 158462590 -84201763 + MIR3 SINE MIR 3 166 -42 220 241 17 17 chr1 158462795 158462853 -84201500 - MIR3 SINE MIR -38 170 113 744 324 53 64 chr1 158462941 158463570 -84200783 + L2 LINE L2 2645 3268 -4 413 214 0 0 chr1 158464014 158464098 -84200255 + 7SLRNA srpRNA srpRNA 237 320 0 314 253 131 10 chr1 158464478 158464577 -84199776 + L2 LINE L2 3193 3303 -10 324 221 29 0 chr1 158464611 158464679 -84199674 + FRAM/FAM SINE Alu 1 69 -97 1305 204 8 0 chr1 158465805 158466055 -84198298 - L1PB4 LINE L1 -5 6151 5900 277 300 133 0 chr1 158466602 158466692 -84197661 - L2 LINE L2 -53 3219 3118 210 279 95 88 chr1 158467173 158467238 -84197115 - MIR3 SINE MIR -49 159 94 705 271 190 5 chr1 158467238 158467459 -84196894 + MIR SINE MIR 1 262 0 2101 151 0 0 chr1 158467862 158468166 -84196187 - AluSx SINE Alu -6 306 3 2150 122 10 0 chr1 158468928 158469231 -84195122 + AluSx SINE Alu 2 307 -5 1507 123 33 14 chr1 158469307 158469583 -84194770 - Tigger7 DNA MER2_type 0 2487 2207 912 215 0 6 chr1 158469585 158469757 -84194596 - Tigger7 DNA MER2_type -2316 171 1 959 168 7 0 chr1 158469888 158470037 -84194316 + FRAM SINE Alu 1 146 -30 979 125 30 0 chr1 158470771 158470939 -84193414 - MER58 DNA MER1_type -143 198 26 846 230 101 5 chr1 158472102 158472311 -84192042 - MIR SINE MIR 0 262 34 261 259 0 12 chr1 158472423 158472504 -84191849 - L2 LINE L2 -54 3259 3180 202 250 0 0 chr1 158472696 158472736 -84191617 + L2 LINE L2 2716 2755 -559 603 310 93 13 chr1 158472924 158473150 -84191203 + MIR SINE MIR 19 262 0 27 49 0 0 chr1 158473504 158473545 -84190808 + AT_rich Low_complexity Low_complexity 1 41 0 1645 191 10 33 chr1 158473567 158473870 -84190483 - AluJb SINE Alu -16 296 1 1934 166 7 0 chr1 158473887 158474177 -84190176 - AluJb SINE Alu -19 293 2 2081 118 28 0 chr1 158474391 158474678 -84189675 + AluSg SINE Alu 1 295 -15 26 0 0 0 chr1 158474711 158474737 -84189616 + AT_rich Low_complexity Low_complexity 1 26 0 33 73 0 0 chr1 158474776 158474844 -84189509 + AT_rich Low_complexity Low_complexity 1 68 0 737 93 0 37 chr1 158474844 158474951 -84189402 - FLAM_C SINE Alu -16 127 25 730 254 0 0 chr1 158475244 158475417 -84188936 - MER97c DNA MER1_type? -912 178 6 790 189 54 38 chr1 158475752 158475900 -84188453 + MER5A DNA MER1_type 1 154 -35 1827 143 27 17 chr1 158475900 158476201 -84188152 + AluJo SINE Alu 1 304 -8 790 189 54 38 chr1 158476201 158476237 -84188116 + MER5A DNA MER1_type 154 188 -1 741 171 61 6 chr1 158477719 158477900 -84186453 - L1P LINE L1 -783 5363 5173 1062 116 101 0 chr1 158478009 158478198 -84186155 - Tigger7 DNA MER2_type 0 2491 2284 256 224 0 0 chr1 158478192 158478259 -84186094 - Tigger7 DNA MER2_type -398 152 86 * 745 151 0 0 chr1 158478281 158478400 -84185953 - Tigger7 DNA MER2_type -585 120 2 285 356 0 17 chr1 158478412 158478527 -84185826 + MER5A DNA MER1_type 77 189 0 704 212 33 5 chr1 158478535 158478719 -84185634 - MER5A DNA MER1_type 0 189 1 519 289 18 103 chr1 158478792 158479238 -84185115 + MLT1J LTR MaLR 7 414 -97 507 315 213 35 chr1 158479415 158480177 -84184176 + L2 LINE L2 228 1124 -2190 464 268 148 0 chr1 158480306 158480489 -84183864 - MER46C DNA MER2_type -3 335 126 237 73 24 0 chr1 158480573 158480614 -84183739 - MER46C DNA MER2_type -265 73 32 423 328 77 73 chr1 158480704 158481170 -84183183 + L2 LINE L2 2490 2957 -357 2184 193 66 88 chr1 158481436 158482177 -84182176 + LTR8A LTR ERV1 1 725 -2 257 333 69 0 chr1 158482323 158482395 -84181958 + L2 LINE L2 3178 3254 -59 1620 205 17 0 chr1 158482427 158482725 -84181628 + AluJb SINE Alu 1 303 -9 1199 223 69 9 chr1 158483299 158483631 -84180722 + L1MC4 LINE L1 7548 7899 -143 2341 104 0 0 chr1 158483694 158483993 -84180360 + AluY SINE Alu 1 299 -12 410 230 23 0 chr1 158483993 158484080 -84180273 + MER5B DNA MER1_type 90 178 0 376 232 28 24 chr1 158484288 158484430 -84179923 - MIR SINE MIR 0 262 78 252 250 12 12 chr1 158484653 158484733 -84179620 - L1ME LINE L1 -463 5658 5579 279 0 0 0 chr1 158485164 158485195 -84179158 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 394 260 55 8 chr1 158485335 158485462 -84178891 - MER94 DNA DNA 0 134 2 205 333 0 0 chr1 158485688 158485748 -84178605 - MIR SINE MIR -64 144 85 35 71 0 0 chr1 158486110 158486180 -84178173 + AT_rich Low_complexity Low_complexity 1 70 0 2028 120 24 3 chr1 158486561 158486853 -84177500 + AluSx SINE Alu 1 298 -14 30 27 0 0 chr1 158487046 158487083 -84177270 + AT_rich Low_complexity Low_complexity 1 37 0 27 62 0 0 chr1 158487362 158487410 -84176943 + AT_rich Low_complexity Low_complexity 1 48 0 375 355 28 19 chr1 158487528 158487739 -84176614 + MIR SINE MIR 50 262 0 1382 138 4 0 chr1 158487750 158487981 -84176372 + MER50 LTR ERV1 1 232 -502 1571 158 4 14 chr1 158487984 158488263 -84176090 + MER50 LTR ERV1 436 711 -23 876 226 0 0 chr1 158488297 158488461 -84175892 - FAM SINE Alu -11 164 1 784 174 47 7 chr1 158488486 158488635 -84175718 - Tigger2 DNA MER2_type 0 2718 2564 * 1001 147 61 0 chr1 158488634 158488832 -84175521 - Tigger2 DNA MER2_type -2508 210 1 1355 98 0 5 chr1 158489041 158489234 -84175119 + L1PA7 LINE L1 5963 6154 0 883 311 63 18 chr1 158489837 158490233 -84174120 - L2 LINE L2 -2240 1074 661 1720 154 7 40 chr1 158490498 158490796 -84173557 + AluSx SINE Alu 1 288 -24 1405 142 4 22 chr1 158491023 158491249 -84173104 + AluJb SINE Alu 73 294 -18 2247 105 0 3 chr1 158491346 158491652 -84172701 + AluSx SINE Alu 1 305 -7 186 43 0 0 chr1 158491672 158491695 -84172658 + (T)n Simple_repeat Simple_repeat 1 23 0 213 42 42 42 chr1 158492138 158492186 -84172167 + (CAAAAA)n Simple_repeat Simple_repeat 3 50 0 372 43 0 0 chr1 158492189 158492235 -84172118 + (TG)n Simple_repeat Simple_repeat 2 47 0 561 306 18 24 chr1 158492911 158493081 -84171272 + MIR SINE MIR 2 170 -92 25 31 0 0 chr1 158493146 158493178 -84171175 + AT_rich Low_complexity Low_complexity 1 32 0 25 75 0 0 chr1 158493475 158493528 -84170825 + AT_rich Low_complexity Low_complexity 1 53 0 7604 102 49 5 chr1 158494355 158495534 -84168819 - Tigger3b DNA MER2_type 0 1231 1 543 313 75 75 chr1 158497080 158497370 -84166983 + L2 LINE L2 2483 2775 -539 743 197 0 0 chr1 158497370 158497497 -84166856 + FLAM_C SINE Alu 1 127 -6 543 313 75 75 chr1 158497497 158497657 -84166696 + L2 LINE L2 2774 2933 -381 2472 74 0 10 chr1 158497692 158498004 -84166349 - AluY SINE Alu -2 309 1 213 356 0 0 chr1 158498600 158498659 -84165694 + L2 LINE L2 1847 1905 -1409 2419 106 0 0 chr1 158498683 158498986 -84165367 - AluSx SINE Alu -9 303 1 5664 74 20 11 chr1 158499043 158499849 -84164504 + L1PA11 LINE L1 5362 6174 0 1254 177 71 7 chr1 158500498 158500809 -84163544 - MER33 DNA MER1_type 0 324 1 500 45 15 0 chr1 158500991 158501058 -84163295 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 396 59 0 0 chr1 158501230 158501281 -84163072 + (CA)n Simple_repeat Simple_repeat 2 52 0 365 305 282 6 chr1 158501403 158501938 -84162415 + L2 LINE L2 1615 2297 -1017 1160 183 8 54 chr1 158501940 158502181 -84162172 - AluJo SINE Alu -82 230 1 447 328 65 37 chr1 158502184 158502507 -84161846 + L2 LINE L2 2323 2654 -660 229 281 16 16 chr1 158502893 158502957 -84161396 + MIR SINE MIR 31 94 -114 22 0 0 0 chr1 158503222 158503244 -84161109 + AT_rich Low_complexity Low_complexity 1 22 0 2510 68 0 3 chr1 158503385 158503692 -84160661 + AluY SINE Alu 1 306 -5 193 309 12 103 chr1 158504256 158504421 -84159932 + L2 LINE L2 2296 2445 -869 222 224 20 0 chr1 158504519 158504568 -84159785 - L2 LINE L2 -8 3305 3256 397 274 38 0 chr1 158504650 158504756 -84159597 + MER63 DNA MER1_type 1 736 -100 244 286 0 0 chr1 158504778 158504827 -84159526 + MER63 DNA MER1_type 1011 1059 -1 305 252 19 87 chr1 158505576 158505679 -84158674 + L2 LINE L2 3203 3298 -15 203 250 83 94 chr1 158505742 158505838 -84158515 + L2 LINE L2 3174 3268 -4 22 56 0 0 chr1 158505886 158505922 -84158431 + AT_rich Low_complexity Low_complexity 1 36 0 11897 88 20 9 chr1 158506294 158508043 -84156310 - L1P LINE L1 -2659 3487 1720 418 273 122 30 chr1 158509922 158510260 -84154093 + L1ME4a LINE L1 5579 5946 -175 2863 10 0 0 chr1 158510666 158510977 -84153376 - AluYa5 SINE Alu 0 311 1 571 222 140 35 chr1 158511742 158511913 -84152440 + MER5A DNA MER1_type 1 189 0 1653 158 87 3 chr1 158512140 158512450 -84151903 - MER2 DNA MER2_type -1 344 9 818 167 8 0 chr1 158512895 158513021 -84151332 + FLAM_C SINE Alu 1 127 -16 1518 138 96 12 chr1 158514159 158514588 -84149765 + LTR54 LTR ERV1 3 510 0 1120 180 226 4 chr1 158515098 158515241 -84149112 - AluJo SINE Alu -10 292 182 270 95 0 0 chr1 158515241 158515283 -84149070 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1120 180 226 4 chr1 158515283 158515378 -84148975 - AluJo SINE Alu -120 182 1 585 277 53 70 chr1 158515601 158515901 -84148452 - L2 LINE L2 0 3313 3019 418 269 103 6 chr1 158516255 158516411 -84147942 + L2 LINE L2 3142 3312 -1 281 368 83 0 chr1 158516838 158516971 -84147382 + MIR3 SINE MIR 3 146 -62 4423 178 41 12 chr1 158517362 158518731 -84145622 + L1MB7 LINE L1 4777 6175 -9 710 258 56 82 chr1 158519087 158519316 -84145037 - MIR SINE MIR 0 262 29 399 21 0 0 chr1 158519316 158519364 -84144989 + (TTA)n Simple_repeat Simple_repeat 1 48 0 703 184 9 0 chr1 158519368 158519482 -84144871 - FLAM_A SINE Alu -18 115 1 710 258 56 82 chr1 158519482 158519514 -84144839 - MIR SINE MIR -236 26 3 246 319 15 67 chr1 158519872 158520007 -84144346 - L2 LINE L2 -1 3271 3144 2471 208 51 4 chr1 158520273 158520803 -84143550 + MER74A LTR ERVL 1 555 -3 1770 166 7 0 chr1 158520816 158521116 -84143237 + AluJo SINE Alu 3 304 0 959 346 87 17 chr1 158521152 158521851 -84142502 - L2 LINE L2 -493 2821 2074 221 337 23 0 chr1 158521925 158522011 -84142342 - MIR SINE MIR -4 258 171 1988 153 121 31 chr1 158522013 158522400 -84141953 + MSTB LTR MaLR 5 426 0 3238 188 17 60 chr1 158522516 158522801 -84141552 - MER72 LTR ERV1 0 722 426 3997 97 18 7 chr1 158522801 158523360 -84140993 + MER61E LTR ERV1 1 565 -4 3238 188 17 60 chr1 158523360 158523730 -84140623 - MER72 LTR ERV1 -296 426 101 1780 179 3 0 chr1 158523730 158524021 -84140332 - AluJo SINE Alu -20 292 1 3238 188 17 60 chr1 158524021 158524118 -84140235 - MER72 LTR ERV1 -621 101 1 207 262 179 0 chr1 158525362 158525446 -84138907 - MIR SINE MIR -44 218 120 1047 282 96 22 chr1 158525536 158526177 -84138176 + L2 LINE L2 2636 3313 0 1301 205 124 45 chr1 158526448 158526850 -84137503 - Charlie4a DNA MER1_type -1484 477 39 2510 164 16 2 chr1 158526850 158527276 -84137077 - MSTB1 LTR MaLR 0 432 1 1301 205 124 45 chr1 158527276 158527292 -84137061 - Charlie4a DNA MER1_type -1922 39 26 627 221 14 0 chr1 158527878 158528023 -84136330 - MER103 DNA DNA -13 153 7 509 349 189 13 chr1 158529349 158529736 -84134617 + L2 LINE L2 2488 2942 -372 267 340 28 0 chr1 158529871 158529977 -84134376 + L2 LINE L2 3158 3266 -47 263 358 0 0 chr1 158531499 158531580 -84132773 + MIR SINE MIR 1 81 -181 21 36 0 0 chr1 158531737 158531765 -84132588 + AT_rich Low_complexity Low_complexity 1 28 0 32 109 0 0 chr1 158532049 158532186 -84132167 + AT_rich Low_complexity Low_complexity 1 137 0 3052 196 12 46 chr1 158532223 158532465 -84131888 - MER82 DNA MER2_type -1 652 403 1599 170 0 82 chr1 158532465 158532794 -84131559 - AluJo SINE Alu -10 302 1 3052 196 12 46 chr1 158532794 158533226 -84131127 - MER82 DNA MER2_type -250 403 1 271 284 55 30 chr1 158533246 158533403 -84130950 - L1M2 LINE L1 -642 5524 5388 211 133 0 22 chr1 158533666 158533711 -84130642 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 * 240 176 39 0 chr1 158533684 158533735 -84130618 + (CATA)n Simple_repeat Simple_repeat 2 54 0 2874 172 228 67 chr1 158534510 158535389 -84128964 - LTR28 LTR ERV1 0 1020 1 2488 140 80 32 chr1 158535587 158535935 -84128418 + L1MA9 LINE L1 5758 6141 -171 3809 202 53 56 chr1 158535935 158536797 -84127556 + MER21B LTR ERV1 1 860 -3 2488 140 80 32 chr1 158536797 158536976 -84127377 + L1MA9 LINE L1 6141 6310 -2 1271 166 85 39 chr1 158537139 158537446 -84126907 + MER33 DNA MER1_type 4 324 0 1316 195 92 3 chr1 158538178 158538460 -84125893 + AluJb SINE Alu 3 309 -3 216 0 0 0 chr1 158538525 158538549 -84125804 + (T)n Simple_repeat Simple_repeat 1 24 0 216 355 0 16 chr1 158538947 158539009 -84125344 + L2 LINE L2 3003 3063 -250 720 223 143 51 chr1 158539068 158539382 -84124971 - MER2 DNA MER2_type -1 343 1 680 226 0 0 chr1 158539449 158539564 -84124789 - FLAM_A SINE Alu -18 115 1 234 339 141 8 chr1 158539590 158539711 -84124642 + L2 LINE L2 3136 3272 0 449 254 0 18 chr1 158540238 158540352 -84124001 + MER81 DNA DNA 1 112 -2 1249 221 211 10 chr1 158541025 158541408 -84122945 + L2 LINE L2 2544 3002 -311 325 261 0 0 chr1 158541415 158541503 -84122850 + (TA)n Simple_repeat Simple_repeat 1 88 0 192 135 0 0 chr1 158541534 158541571 -84122782 + (TA)n Simple_repeat Simple_repeat 1 37 0 1049 216 34 45 chr1 158541601 158541769 -84122584 - AluJo SINE Alu -13 289 124 227 54 27 0 chr1 158541769 158541806 -84122547 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1049 216 34 45 chr1 158541806 158541928 -84122425 - AluJo SINE Alu -178 124 2 771 210 72 108 chr1 158541938 158542243 -84122110 + L2 LINE L2 3020 3313 0 1250 253 157 36 chr1 158542702 158543280 -84121073 - L1MC4 LINE L1 -141 7901 7254 1578 244 108 27 chr1 158543296 158543652 -84120701 - L1MC4 LINE L1 -963 7079 6656 189 0 0 0 chr1 158543652 158543673 -84120680 + (GA)n Simple_repeat Simple_repeat 2 22 0 1578 244 108 27 chr1 158543673 158543902 -84120451 - L1MC4 LINE L1 -1386 6656 6447 273 167 0 0 chr1 158544361 158544415 -84119938 + (TA)n Simple_repeat Simple_repeat 2 55 0 283 328 63 73 chr1 158544588 158544875 -84119478 - L2 LINE L2 0 3313 3030 1977 136 7 14 chr1 158544976 158545271 -84119082 - AluSq SINE Alu -18 295 3 382 234 139 0 chr1 158545466 158545603 -84118750 - Charlie7 DNA MER1_type -2455 157 2 226 302 0 0 chr1 158545911 158545974 -84118379 - L2 LINE L2 0 3313 3251 227 286 26 39 chr1 158546184 158546261 -84118092 + L2 LINE L2 3227 3302 -11 392 197 94 0 chr1 158546568 158546685 -84117668 - L1ME4a LINE L1 -3 6118 5991 221 217 0 87 chr1 158546910 158546979 -84117374 + L2 LINE L2 3206 3268 -4 794 165 187 175 chr1 158547265 158547683 -84116670 - MLT1A2 LTR MaLR 0 428 6 31 82 0 0 chr1 158547826 158547899 -84116454 + AT_rich Low_complexity Low_complexity 1 73 0 279 0 0 0 chr1 158547907 158547938 -84116415 + (CA)n Simple_repeat Simple_repeat 2 32 0 717 195 0 0 chr1 158547951 158548074 -84116279 - FLAM_C SINE Alu -20 123 1 192 131 0 7 chr1 158548102 158548135 -84116218 + L2 LINE L2 3238 3311 -2 2909 3 0 0 chr1 158548261 158548572 -84115781 + AluYb8 SINE Alu 1 311 -7 21 0 0 0 chr1 158548677 158548698 -84115655 + AT_rich Low_complexity Low_complexity 1 21 0 2077 128 0 3 chr1 158549544 158549840 -84114513 + AluSx SINE Alu 1 295 -17 180 380 26 44 chr1 158550730 158550959 -84113394 + L2 LINE L2 2418 2642 -672 21 0 0 0 chr1 158551002 158551023 -84113330 + AT_rich Low_complexity Low_complexity 1 21 0 2970 287 68 18 chr1 158551065 158552688 -84111665 + L1MEc LINE L1 45 1776 -4516 1360 108 10 0 chr1 158552721 158552967 -84111386 - AluSq SINE Alu 0 365 118 530 215 70 19 chr1 158552969 158553127 -84111226 + L1MEc LINE L1 1846 2011 -4385 413 343 157 0 chr1 158553203 158553375 -84110978 - L2 LINE L2 -339 2975 2777 299 272 9 0 chr1 158553741 158553855 -84110498 + CT-rich Low_complexity Low_complexity 1 115 0 264 342 216 0 chr1 158554112 158554223 -84110130 + L2 LINE L2 3121 3255 -17 669 281 92 23 chr1 158554371 158554588 -84109765 - MIR SINE MIR 0 262 31 974 171 62 95 chr1 158554689 158554963 -84109390 - LTR54 LTR ERV1 -245 265 1 469 335 129 0 chr1 158555250 158555444 -84108909 - MIR SINE MIR -40 222 4 389 340 26 26 chr1 158556086 158556277 -84108076 - MIR SINE MIR -65 197 7 21 36 0 0 chr1 158556298 158556326 -84108027 + AT_rich Low_complexity Low_complexity 1 28 0 372 103 0 0 chr1 158558324 158558382 -84105971 + (CA)n Simple_repeat Simple_repeat 2 59 0 252 371 116 19 chr1 158559169 158559436 -84104917 - L2 LINE L2 -734 2580 2288 365 224 140 0 chr1 158559830 158559937 -84104416 - Charlie1a DNA MER1_type 0 1455 1334 4917 158 88 81 chr1 158559981 158561308 -84103045 - Charlie1a DNA MER1_type -76 1379 44 23 68 0 0 chr1 158561491 158561535 -84102818 + AT_rich Low_complexity Low_complexity 1 44 0 401 272 9 0 chr1 158561684 158561798 -84102555 + L1M4 LINE L1 3623 3737 -2409 26 50 0 0 chr1 158561798 158561838 -84102515 + AT_rich Low_complexity Low_complexity 1 40 0 621 252 0 0 chr1 158561838 158561953 -84102400 - FLAM_A SINE Alu -27 115 1 25 65 0 0 chr1 158561978 158562024 -84102329 + AT_rich Low_complexity Low_complexity 1 46 0 3057 220 61 55 chr1 158562024 158563172 -84101181 + L1M4 LINE L1 3757 4911 -1235 455 300 47 24 chr1 158563305 158563336 -84101017 - MIR SINE MIR -60 202 173 1596 192 59 28 chr1 158563336 158563690 -84100663 + MLT1A1 LTR MaLR 1 365 0 455 300 47 24 chr1 158563690 158563828 -84100525 - MIR SINE MIR -89 173 29 29 28 0 0 chr1 158563832 158563868 -84100485 + AT_rich Low_complexity Low_complexity 1 36 0 222 245 0 0 chr1 158563898 158563947 -84100406 + (TA)n Simple_repeat Simple_repeat 1 49 0 2302 85 0 13 chr1 158564216 158564521 -84099832 + AluY SINE Alu 1 301 -10 1991 162 0 0 chr1 158564714 158565022 -84099331 + AluSx SINE Alu 3 310 -2 1295 171 0 26 chr1 158565960 158566188 -84098165 + AluJb SINE Alu 78 299 -13 259 167 0 0 chr1 158566472 158566526 -84097827 - FAM SINE Alu -8 167 125 1316 171 9 9 chr1 158566526 158566742 -84097611 - AluJo SINE Alu -94 218 3 14028 185 15 10 chr1 158567354 158571433 -84092920 - L1PB3 LINE L1 0 6870 2775 * 42682 36 21 1 chr1 158571427 158577457 -84086896 - L1PA2 LINE L1 -2 6153 1 1471 183 10 13 chr1 158577462 158577768 -84086585 - L1PB3 LINE L1 -4122 2741 2437 1507 182 7 38 chr1 158577921 158578240 -84086113 + AluJo SINE Alu 1 310 0 309 209 0 0 chr1 158578240 158578307 -84086046 + (CATA)n Simple_repeat Simple_repeat 1 67 0 814 225 45 0 chr1 158578672 158578850 -84085503 + MER5A DNA MER1_type 3 188 -1 29 78 0 0 chr1 158578924 158578988 -84085365 + AT_rich Low_complexity Low_complexity 1 64 0 347 218 36 27 chr1 158579212 158579322 -84085031 - L1ME3A LINE L1 -223 5947 5837 234 194 65 0 chr1 158579343 158579405 -84084948 + L1ME4a LINE L1 5976 6041 -80 588 304 11 22 chr1 158581576 158581760 -84082593 + MER5A DNA MER1_type 7 188 -1 259 260 13 26 chr1 158581874 158581951 -84082402 + MLT1H LTR MaLR 28 103 -439 284 203 105 73 chr1 158582006 158582235 -84082118 + MLT1H LTR MaLR 156 487 -68 411 360 24 14 chr1 158582330 158582619 -84081734 + L1PA13 LINE L1 7 298 -7283 18336 186 18 17 chr1 158582879 158584687 -84079666 + L1PA13 LINE L1 2319 4124 -3477 2707 88 11 11 chr1 158584687 158585062 -84079291 - THE1C LTR MaLR 0 375 1 18336 186 18 17 chr1 158585062 158586651 -84077702 + L1PA13 LINE L1 4124 5710 -1891 2221 128 0 0 chr1 158586651 158586957 -84077396 + AluSx SINE Alu 1 306 -6 18336 186 18 17 chr1 158586957 158588819 -84075534 + L1PA13 LINE L1 5710 7594 -7 26 0 0 0 chr1 158588831 158588857 -84075496 + AT_rich Low_complexity Low_complexity 1 26 0 703 200 0 0 chr1 158589811 158589936 -84074417 - FLAM_C SINE Alu -18 125 1 188 135 27 0 chr1 158590486 158590523 -84073830 + (TAG)n Simple_repeat Simple_repeat 1 38 0 860 264 23 9 chr1 158590544 158590764 -84073589 - MIR SINE MIR -10 252 30 537 202 90 125 chr1 158591032 158591561 -84072792 + MER110 LTR ERV1 1 491 0 32 26 0 0 chr1 158591609 158591648 -84072705 + AT_rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr1 158591984 158592026 -84072327 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr1 158592058 158592093 -84072260 + AT_rich Low_complexity Low_complexity 1 35 0 5538 100 6 9 chr1 158592146 158592924 -84071429 - L1PA11 LINE L1 -1 6173 5396 2642 103 0 10 chr1 158592924 158593311 -84071042 - L1PA7 LINE L1 -3 6151 5769 5538 100 6 9 chr1 158593311 158593323 -84071030 - L1PA11 LINE L1 -778 5396 5385 43911 39 1 2 chr1 158593327 158595154 -84069199 - L1PA3 LINE L1 -1 6154 4327 1785 36 5 14 chr1 158595154 158595374 -84068979 + AluY SINE Alu 94 311 0 43911 39 1 2 chr1 158595374 158599705 -84064648 - L1PA3 LINE L1 -1828 4327 2 22369 98 8 1 chr1 158599703 158604228 -84060125 - L1PA7 LINE L1 -373 5781 1236 * 2702 153 21 0 chr1 158604216 158604686 -84059667 - L1PA11 LINE L1 -751 5395 4916 * 192 278 0 0 chr1 158604883 158604955 -84059398 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 1016 184 8 64 chr1 158604955 158605205 -84059148 - MER46A DNA MER2_type 0 236 1 189 0 0 0 chr1 158605419 158605440 -84058913 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 338 225 106 66 chr1 158605481 158605632 -84058721 + MIR SINE MIR 102 258 -4 837 265 119 39 chr1 158605720 158606214 -84058139 + L1ME4a LINE L1 5584 6117 -4 189 195 0 0 chr1 158606413 158606454 -84057899 + (TA)n Simple_repeat Simple_repeat 2 42 0 1801 112 116 8 chr1 158606569 158606836 -84057517 + AluSg1 SINE Alu 1 296 -13 35 41 0 0 chr1 158607618 158607667 -84056686 + AT_rich Low_complexity Low_complexity 1 49 0 232 375 170 28 chr1 158607888 158608171 -84056182 + L2 LINE L2 2912 3234 -38 1296 223 13 0 chr1 158608181 158608410 -84055943 + MER8 DNA MER2_type 8 239 0 242 235 0 139 chr1 158608719 158608834 -84055519 - MER102b DNA MER1_type -10 331 233 1185 216 124 28 chr1 158608836 158609198 -84055155 + L2 LINE L2 1746 2142 -1172 506 240 40 8 chr1 158609297 158609422 -84054931 - MIR SINE MIR -114 148 20 27 29 0 0 chr1 158609937 158609971 -84054382 + AT_rich Low_complexity Low_complexity 1 34 0 6724 59 17 0 chr1 158610176 158611537 -84052816 + L1PA7 LINE L1 4784 6161 0 1760 153 55 12 chr1 158611538 158611865 -84052488 + Tigger1 DNA MER2_type 2078 2418 0 1565 228 65 8 chr1 158611865 158612373 -84051980 + L1M4 LINE L1 4796 5332 -814 248 367 113 23 chr1 158612442 158612832 -84051521 - L2 LINE L2 -453 2861 2437 1629 183 3 20 chr1 158612879 158613185 -84051168 + AluJo SINE Alu 1 301 -11 1018 274 68 42 chr1 158613284 158613905 -84050448 - L1M4 LINE L1 -1213 4933 4297 438 269 55 7 chr1 158613958 158614103 -84050250 - MIR SINE MIR 0 262 111 2262 153 41 9 chr1 158614697 158615116 -84049237 + MSTB1 LTR MaLR 1 432 0 4605 257 150 23 chr1 158615415 158616839 -84047514 + L2 LINE L2 1029 2700 -614 2119 137 0 0 chr1 158616839 158617139 -84047214 - AluSx SINE Alu -12 300 1 4605 257 150 23 chr1 158617139 158617390 -84046963 + L2 LINE L2 2700 2918 -396 963 294 128 42 chr1 158617385 158617814 -84046539 - L2 LINE L2 -385 2929 2464 * 193 339 0 0 chr1 158619766 158619822 -84044531 - L2 LINE L2 -1 3271 3216 5190 141 30 3 chr1 158620557 158621935 -84042418 + L1PA16 LINE L1 4748 6155 -11 24 0 0 29 chr1 158621935 158621948 -84042405 + AT_rich Low_complexity Low_complexity 1 13 -21 4366 111 4 20 chr1 158621948 158622648 -84041705 + L1PA16 LINE L1 5476 6164 -2 24 0 0 29 chr1 158622648 158622669 -84041684 + AT_rich Low_complexity Low_complexity 13 34 0 29 28 0 0 chr1 158623155 158623191 -84041162 + AT_rich Low_complexity Low_complexity 1 36 0 2020 129 33 7 chr1 158623315 158623617 -84040736 - AluSx SINE Alu -2 310 1 422 303 50 25 chr1 158624478 158624676 -84039677 - MIR SINE MIR -57 205 3 183 114 0 0 chr1 158625112 158625147 -84039206 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 334 375 76 52 chr1 158625185 158625348 -84039005 - L2 LINE L2 0 3272 3114 1654 249 33 13 chr1 158625348 158625802 -84038551 + LTR40c LTR ERVL 3 465 0 334 375 76 52 chr1 158625802 158626006 -84038347 - L2 LINE L2 -158 3114 2896 232 335 12 61 chr1 158626049 158626213 -84038140 - L2 LINE L2 -498 2816 2661 191 309 32 21 chr1 158626478 158626572 -84037781 - L2 LINE L2 -1042 2272 2178 731 173 24 0 chr1 158626602 158626729 -84037624 + FLAM_C SINE Alu 2 131 -2 359 375 126 30 chr1 158626776 158627235 -84037118 - L2 LINE L2 -2568 746 244 520 194 139 67 chr1 158627544 158627603 -84036750 - MIR SINE MIR -68 194 141 2325 104 0 0 chr1 158627603 158627902 -84036451 + AluSx SINE Alu 1 299 -13 520 194 139 67 chr1 158627902 158628007 -84036346 - MIR SINE MIR -121 141 18 316 249 46 41 chr1 158629196 158629378 -84034975 + MER41E LTR ERV1 55 370 -265 25 0 0 0 chr1 158630188 158630213 -84034140 + AT_rich Low_complexity Low_complexity 1 25 0 380 301 68 49 chr1 158630559 158630722 -84033631 - MIR3 SINE MIR -21 187 22 2342 66 7 3 chr1 158631002 158631305 -84033048 + AluY SINE Alu 1 304 -7 24 32 0 0 chr1 158631499 158631530 -84032823 + AT_rich Low_complexity Low_complexity 1 31 0 369 243 358 5 chr1 158631912 158632130 -84032223 - MLT1H LTR MaLR -4 545 251 264 155 17 52 chr1 158632179 158632237 -84032116 - MLT1I LTR MaLR -266 143 98 24 53 0 0 chr1 158633001 158633039 -84031314 + AT_rich Low_complexity Low_complexity 1 38 0 411 314 117 25 chr1 158633550 158633875 -84030478 + L1MEd LINE L1 1122 1476 -5054 246 273 57 0 chr1 158633885 158633973 -84030380 + L1MEd LINE L1 1899 1991 -4549 320 292 97 0 chr1 158634310 158634454 -84029899 + L1MEd LINE L1 2440 2597 -4124 26 0 0 0 chr1 158634478 158634504 -84029849 + AT_rich Low_complexity Low_complexity 1 26 0 813 114 0 0 chr1 158634521 158634644 -84029709 + L1PA8 LINE L1 6050 6172 0 1673 248 62 38 chr1 158634704 158635118 -84029235 + L1MEd LINE L1 2666 3107 -3433 2200 112 3 6 chr1 158635118 158635431 -84028922 - AluSx SINE Alu 0 312 1 1673 248 62 38 chr1 158635431 158635759 -84028594 + L1MEd LINE L1 3107 3426 -3114 207 0 0 0 chr1 158636044 158636067 -84028286 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1952 230 36 26 chr1 158636297 158636792 -84027561 + MLT1D LTR MaLR 1 500 -5 364 232 137 99 chr1 158636801 158637034 -84027319 + L1M4c LINE L1 2258 2499 -3885 373 297 187 22 chr1 158638474 158638747 -84025606 - L2 LINE L2 -955 2359 2042 243 53 27 67 chr1 158638882 158638957 -84025396 + (TTTAA)n Simple_repeat Simple_repeat 1 72 0 231 324 37 37 chr1 158640757 158640865 -84023488 + MIR3 SINE MIR 8 115 -93 1055 191 10 15 chr1 158641026 158641230 -84023123 + AluJb SINE Alu 85 287 -25 292 176 0 0 chr1 158641273 158641324 -84023029 + MIR SINE MIR 200 250 -12 182 277 9 134 chr1 158642327 158642439 -84021914 - L2 LINE L2 0 3272 3175 22 0 0 0 chr1 158642537 158642559 -84021794 + AT_rich Low_complexity Low_complexity 1 22 0 2173 97 0 35 chr1 158643701 158644020 -84020333 - AluSx SINE Alu -4 308 1 875 279 77 23 chr1 158644891 158645331 -84019022 - LTR16B LTR ERVL 0 464 1 34 72 0 0 chr1 158645856 158645925 -84018428 + AT_rich Low_complexity Low_complexity 1 69 0 456 326 0 16 chr1 158646837 158646966 -84017387 - MIR3 SINE MIR -45 163 37 180 77 0 0 chr1 158647949 158647975 -84016378 + (CTG)n Simple_repeat Simple_repeat 2 27 0 504 231 74 0 chr1 158648104 158648225 -84016128 + MIR SINE MIR 87 216 -46 23 33 0 0 chr1 158648470 158648500 -84015853 + AT_rich Low_complexity Low_complexity 1 30 0 1804 133 63 0 chr1 158648694 158648980 -84015373 + L1MA1 LINE L1 1895 2198 -5367 5991 97 21 4 chr1 158649275 158650193 -84014160 + L1MA1 LINE L1 2190 3122 -4443 512 55 41 0 chr1 158650189 158650262 -84014091 + L1P4 LINE L1 5412 5487 -676 * 2033 111 4 4 chr1 158650263 158650563 -84013790 + AluSg SINE Alu 1 300 0 10265 141 36 21 chr1 158650566 158653509 -84010844 + L1MA1 LINE L1 4725 7717 -4 329 176 154 0 chr1 158653525 158653616 -84010737 - MIR SINE MIR -157 105 1 6666 54 16 3 chr1 158654195 158655551 -84008802 + L1PA8A LINE L1 4756 6119 -12 339 153 46 0 chr1 158655551 158655682 -84008671 + (TA)n Simple_repeat Simple_repeat 1 137 0 7431 121 97 101 chr1 158655808 158657514 -84006839 - pTR5 LTR ERV1 0 2438 741 249 325 9 26 chr1 158658672 158658786 -84005567 - MIR SINE MIR -75 133 22 183 316 0 70 chr1 158659487 158659544 -84004809 + L2 LINE L2 419 471 -2843 1419 249 111 14 chr1 158659551 158659985 -84004368 + LTR33 LTR ERVL 11 486 -35 1812 142 69 28 chr1 158659985 158660345 -84004008 + THE1C LTR MaLR 1 375 0 9428 142 7 31 chr1 158660348 158661964 -84002389 + THE1C-int LTR MaLR 4 1580 0 1972 139 52 30 chr1 158661964 158662331 -84002022 + THE1C LTR MaLR 1 375 0 312 198 55 33 chr1 158662351 158662442 -84001911 + L1MC4 LINE L1 6611 6703 -1339 * 330 233 44 22 chr1 158662412 158662502 -84001851 + L1MC4 LINE L1 6612 6703 -1339 242 93 0 23 chr1 158662506 158662549 -84001804 + (TA)n Simple_repeat Simple_repeat 1 42 0 312 226 11 43 chr1 158662558 158662651 -84001702 + L1MC4 LINE L1 6614 6703 -1339 * 320 221 0 53 chr1 158662618 158662744 -84001609 + L1MC4 LINE L1 6614 6703 -1339 629 187 0 7 chr1 158662748 158662903 -84001450 + (TA)n Simple_repeat Simple_repeat 1 154 0 181 313 0 0 chr1 158662935 158662983 -84001370 + L2 LINE L2 455 502 -2812 7023 218 66 17 chr1 158663004 158663363 -84000990 - L1M4 LINE L1 -1020 5126 4786 2190 106 3 13 chr1 158663363 158663664 -84000689 - AluSq SINE Alu -15 298 1 7023 218 66 17 chr1 158663664 158665254 -83999099 - L1M4 LINE L1 -1360 4786 3081 649 194 8 30 chr1 158665266 158665400 -83998953 - FLAM_C SINE Alu -12 131 1 2528 269 65 40 chr1 158665476 158666674 -83997679 + L2 LINE L2 2100 3313 0 445 248 51 0 chr1 158666749 158666866 -83997487 - L2 LINE L2 -1 3312 3190 24 0 0 0 chr1 158666889 158666913 -83997440 + AT_rich Low_complexity Low_complexity 1 24 0 682 217 77 0 chr1 158666932 158667075 -83997278 + FRAM SINE Alu 1 152 -24 299 302 82 60 chr1 158667184 158667366 -83996987 - L2 LINE L2 -285 3028 2843 381 309 171 0 chr1 158667571 158667723 -83996630 - MER91B DNA MER1_type -12 178 1 21 0 0 0 chr1 158668766 158668787 -83995566 + AT_rich Low_complexity Low_complexity 1 21 0 251 278 97 14 chr1 158668814 158668886 -83995467 + MIR SINE MIR 20 97 -165 507 92 0 0 chr1 158669017 158669093 -83995260 - MER41A LTR ERV1 -81 473 398 1701 115 0 4 chr1 158669788 158670022 -83994331 + AluSq SINE Alu 11 243 -70 714 123 0 29 chr1 158670023 158670161 -83994192 + (GGAA)n Simple_repeat Simple_repeat 2 135 0 207 162 0 0 chr1 158670838 158670875 -83993478 + T-rich Low_complexity Low_complexity 1 37 0 280 257 134 29 chr1 158670954 158671125 -83993228 + MER112 DNA MER1_type 68 256 -4 11628 164 30 16 chr1 158671169 158674507 -83989846 + L1MA2 LINE L1 2877 6261 -43 363 193 34 17 chr1 158674530 158674706 -83989647 + (TA)n Simple_repeat Simple_repeat 1 179 0 254 119 15 45 chr1 158674712 158674779 -83989574 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 304 151 70 35 chr1 158674779 158674865 -83989488 + L1MCa LINE L1 1977 2065 -4361 224 89 89 0 chr1 158674871 158674950 -83989403 + (TA)n Simple_repeat Simple_repeat 1 86 0 283 55 41 41 chr1 158675122 158675195 -83989158 + (TTATA)n Simple_repeat Simple_repeat 2 74 0 246 62 0 0 chr1 158675195 158675227 -83989126 + (CA)n Simple_repeat Simple_repeat 2 33 0 1341 249 113 36 chr1 158675295 158675764 -83988589 + L2 LINE L2 2808 3312 -1 356 224 180 68 chr1 158676143 158676304 -83988049 - L2 LINE L2 -197 3116 2938 367 266 153 0 chr1 158676869 158676966 -83987387 - MIR SINE MIR 0 262 141 189 0 0 0 chr1 158676966 158676987 -83987366 + (TTA)n Simple_repeat Simple_repeat 3 23 0 367 266 153 0 chr1 158676987 158677013 -83987340 - MIR SINE MIR -121 141 120 183 338 104 13 chr1 158677077 158677154 -83987199 + L2 LINE L2 3143 3226 -46 299 298 85 50 chr1 158678097 158678238 -83986115 - MIR SINE MIR -64 198 53 426 300 142 28 chr1 158678611 158678871 -83985482 + L1ME4a LINE L1 5509 5738 -383 1328 197 102 13 chr1 158678871 158679186 -83985167 + MER2 DNA MER2_type 2 344 0 426 300 142 28 chr1 158679186 158679425 -83984928 + L1ME4a LINE L1 5738 6065 -56 714 306 122 3 chr1 158680295 158680679 -83983674 + L2 LINE L2 2761 3178 -135 314 271 167 48 chr1 158680726 158680977 -83983376 + L2 LINE L2 3033 3313 0 1976 136 0 7 chr1 158681325 158681619 -83982734 + AluSx SINE Alu 3 294 -18 2017 131 0 0 chr1 158681763 158682046 -83982307 + AluSx SINE Alu 13 295 -17 1706 191 7 7 chr1 158682781 158683090 -83981263 + AluJb SINE Alu 1 309 -3 598 211 150 14 chr1 158683142 158683355 -83980998 + MER112 DNA MER1_type 13 254 -6 458 337 66 0 chr1 158683496 158683662 -83980691 + L2 LINE L2 2897 3073 -240 302 316 197 7 chr1 158683966 158684118 -83980235 - L2 LINE L2 -4 3268 3088 744 197 0 0 chr1 158684248 158684370 -83979983 - FLAM_A SINE Alu -11 122 1 998 167 82 52 chr1 158684438 158684741 -83979612 + LTR8 LTR ERV1 1 256 -435 1198 187 62 91 chr1 158684781 158685231 -83979122 + LTR8A LTR ERV1 287 723 -4 405 361 122 11 chr1 158685650 158686018 -83978335 - L2 LINE L2 -802 2512 2104 293 282 92 23 chr1 158686818 158686949 -83977404 - MER5A DNA MER1_type -7 182 43 224 95 71 0 chr1 158686970 158687012 -83977341 + A-rich Low_complexity Low_complexity 2 46 0 619 299 128 23 chr1 158689710 158689737 -83974616 + L2 LINE L2 1890 1913 -1401 2496 157 42 11 chr1 158689737 158690188 -83974165 - MLT1C LTR MaLR 0 467 3 619 299 128 23 chr1 158690188 158690336 -83974017 + L2 LINE L2 1913 2044 -1270 597 179 232 6 chr1 158690336 158690504 -83973849 - MER3 DNA MER1_type -3 206 1 619 299 128 23 chr1 158690504 158690755 -83973598 + L2 LINE L2 2044 2362 -952 24 32 0 0 chr1 158691168 158691199 -83973154 + AT_rich Low_complexity Low_complexity 1 31 0 417 203 101 63 chr1 158691738 158691896 -83972457 + MER103 DNA DNA 3 166 0 185 341 89 57 chr1 158692257 158692380 -83971973 - L2 LINE L2 -9 3263 3137 224 255 104 66 chr1 158692446 158692552 -83971801 - MIR SINE MIR -151 111 2 1116 187 112 11 chr1 158692691 158692959 -83971394 + MER58 DNA MER1_type 2124 2418 -2 1374 158 0 83 chr1 158693909 158694163 -83970190 + AluJb SINE Alu 1 233 -79 331 250 67 19 chr1 158694661 158694765 -83969588 - MIR SINE MIR 0 262 154 275 307 34 29 chr1 158694867 158695072 -83969281 + L1ME LINE L1 5621 5826 -295 263 191 44 0 chr1 158695146 158695214 -83969139 + (TA)n Simple_repeat Simple_repeat 1 71 0 276 214 0 0 chr1 158695214 158695284 -83969069 - LTR66 LTR ERVL -166 444 375 186 43 0 0 chr1 158695616 158695639 -83968714 + (TA)n Simple_repeat Simple_repeat 2 24 0 436 294 170 5 chr1 158695973 158696167 -83968186 - MIR SINE MIR -5 257 32 235 162 0 40 chr1 158697404 158697478 -83966875 - L1ME4a LINE L1 -5 6116 6046 337 308 162 4 chr1 158697537 158697771 -83966582 - L1ME4a LINE L1 -222 5899 5629 23 0 0 0 chr1 158699397 158699420 -83964933 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 158699508 158699531 -83964822 + AT_rich Low_complexity Low_complexity 1 23 0 458 230 26 52 chr1 158699567 158699758 -83964595 + L1MC4a LINE L1 5746 5931 -1877 24 32 0 0 chr1 158699879 158699910 -83964443 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr1 158699977 158700003 -83964350 + AT_rich Low_complexity Low_complexity 1 26 0 1984 263 55 15 chr1 158700956 158701615 -83962738 + L1M4 LINE L1 3232 3916 -2230 228 324 261 22 chr1 158703211 158703794 -83960559 + L2 LINE L2 1366 2087 -1227 269 349 28 0 chr1 158704195 158704304 -83960049 + MIR SINE MIR 151 262 0 358 260 94 31 chr1 158704888 158705015 -83959338 + L2 LINE L2 3175 3309 -4 256 343 128 8 chr1 158706167 158706418 -83957935 - L2 LINE L2 -1226 2088 1808 2115 66 0 0 chr1 158706493 158706752 -83957601 + AluY SINE Alu 40 298 -13 419 190 25 0 chr1 158707630 158707709 -83956644 + MER58 DNA MER1_type 191 271 -70 22 0 0 0 chr1 158708190 158708212 -83956141 + AT_rich Low_complexity Low_complexity 1 22 0 4450 155 61 12 chr1 158708467 158708759 -83955594 + L1MB4 LINE L1 5026 5302 -878 2051 132 0 13 chr1 158708759 158708895 -83955458 + AluSq SINE Alu 1 137 -176 2304 85 3 7 chr1 158708895 158709201 -83955152 + AluSx SINE Alu 1 305 -7 2051 132 0 13 chr1 158709201 158709375 -83954978 + AluSq SINE Alu 137 307 -6 4450 155 61 12 chr1 158709375 158710160 -83954193 + L1MB4 LINE L1 5302 6151 -29 21 36 0 0 chr1 158710168 158710196 -83954157 + AT_rich Low_complexity Low_complexity 1 28 0 604 224 98 8 chr1 158710293 158710557 -83953796 + L1M4 LINE L1 3026 3313 -2833 340 127 127 0 chr1 158710632 158710695 -83953658 - MSTA LTR MaLR 0 428 358 5907 78 29 22 chr1 158710695 158711530 -83952823 - PABL_A-int LTR ERV1 -4174 841 1 5081 68 22 0 chr1 158711530 158712176 -83952177 - PABL_A LTR ERV1 0 660 1 1337 203 143 25 chr1 158712182 158712581 -83951772 + L1M4 LINE L1 4519 4964 -1182 2191 206 205 33 chr1 158712581 158713308 -83951045 + MER21B LTR ERV1 1 852 -11 2023 109 17 7 chr1 158713362 158713656 -83950697 + AluSx SINE Alu 1 297 -15 2153 131 0 0 chr1 158713660 158713958 -83950395 - AluSx SINE Alu -14 298 1 199 303 67 0 chr1 158714242 158714331 -83950022 + MIR SINE MIR 163 257 -5 1268 164 30 0 chr1 158714384 158714615 -83949738 - L1PA16 LINE L1 -9 6157 5920 221 119 24 0 chr1 158715868 158715910 -83948443 + (TG)n Simple_repeat Simple_repeat 1 43 0 302 256 0 13 chr1 158716312 158716328 -83948025 + GA-rich Low_complexity Low_complexity 4 19 -61 1862 134 0 8 chr1 158716328 158716596 -83947757 + AluSx SINE Alu 1 266 -46 302 256 0 13 chr1 158716596 158716657 -83947696 + GA-rich Low_complexity Low_complexity 19 80 0 211 146 24 0 chr1 158717081 158717122 -83947231 + (TA)n Simple_repeat Simple_repeat 1 42 0 1301 88 153 4 chr1 158718245 158718473 -83945880 + L1MA6 LINE L1 6032 6293 -7 228 308 154 0 chr1 158718549 158718640 -83945713 - L2 LINE L2 -1 3312 3208 1008 171 112 0 chr1 158718646 158718833 -83945520 - MER3 DNA MER1_type 0 209 2 1250 281 107 14 chr1 158718959 158719420 -83944933 - L2 LINE L2 -313 3000 2492 21 71 0 0 chr1 158719469 158719511 -83944842 + AT_rich Low_complexity Low_complexity 1 42 0 571 324 78 73 chr1 158719732 158720619 -83943734 + L1MEc LINE L1 202 1092 -5471 39995 70 12 4 chr1 158720748 158726854 -83937499 + L1PA5 LINE L1 4 6152 -2 22 0 0 0 chr1 158726871 158726893 -83937460 + AT_rich Low_complexity Low_complexity 1 22 0 757 300 84 47 chr1 158726913 158727447 -83936906 + L1MEc LINE L1 1146 1633 -4751 262 110 41 41 chr1 158727610 158727683 -83936670 + L1MEc LINE L1 2358 2430 -4133 31736 110 13 50 chr1 158727683 158734084 -83930269 + L1PA7 LINE L1 2 6152 -2 1299 245 88 0 chr1 158734134 158734612 -83929741 + L1MEc LINE L1 2446 2965 -3417 271 339 18 9 chr1 158735954 158736063 -83928290 + L2 LINE L2 2234 2343 -971 2815 133 14 5 chr1 158736071 158736499 -83927854 - L1P3 LINE L1 -5443 432 1 2562 233 109 34 chr1 158737093 158737860 -83926493 - MER21B LTR ERV1 -11 852 28 345 269 13 0 chr1 158737891 158737969 -83926384 - MER21B LTR ERV1 -773 90 12 397 276 142 47 chr1 158738077 158738421 -83925932 + L1ME4a LINE L1 5508 5884 -237 325 267 17 68 chr1 158738442 158738618 -83925735 + L1ME4a LINE L1 5949 6115 -6 23 33 0 0 chr1 158738657 158738687 -83925666 + AT_rich Low_complexity Low_complexity 1 30 0 1078 105 0 0 chr1 158739354 158739497 -83924856 + AluSq/x SINE Alu 1 143 -170 24 67 0 0 chr1 158739704 158739749 -83924604 + AT_rich Low_complexity Low_complexity 1 45 0 286 243 75 47 chr1 158740552 158740659 -83923694 + MIR SINE MIR 35 144 -64 257 296 93 19 chr1 158741112 158741220 -83923133 + MIR3 SINE MIR 89 204 -4 255 106 45 0 chr1 158743069 158743135 -83921218 + (TA)n Simple_repeat Simple_repeat 2 70 0 180 0 0 0 chr1 158743484 158743504 -83920849 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 382 205 94 51 chr1 158743607 158743724 -83920629 + L2 LINE L2 3184 3305 -8 270 176 0 0 chr1 158744147 158744198 -83920155 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 289 326 20 10 chr1 158744349 158744447 -83919906 + L2 LINE L2 2121 2219 -1095 36 0 0 0 chr1 158744582 158744618 -83919735 + AT_rich Low_complexity Low_complexity 1 36 0 397 324 6 39 chr1 158744654 158744833 -83919520 + MIR SINE MIR 64 236 -26 182 263 0 0 chr1 158748457 158748495 -83915858 - MIR SINE MIR -138 70 33 6210 142 16 17 chr1 158748577 158748691 -83915662 - L1PB1 LINE L1 -15 6136 6023 222 62 0 0 chr1 158748691 158748723 -83915630 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1591 145 8 4 chr1 158748725 158748973 -83915380 - AluSx SINE Alu -25 287 39 6210 142 16 17 chr1 158748973 158750674 -83913679 - L1PB1 LINE L1 -129 6022 4316 3072 97 185 26 chr1 158750674 158751221 -83913132 - MER51A LTR ERV1 0 634 1 6210 142 16 17 chr1 158751221 158751396 -83912957 - L1PB1 LINE L1 -1835 4316 4142 693 114 73 0 chr1 158751400 158751523 -83912830 + L1MB8 LINE L1 5701 5832 -346 * 3015 191 62 8 chr1 158751508 158752121 -83912232 + L1MB3 LINE L1 1 646 -5738 2465 173 106 6 chr1 158752109 158752657 -83911696 + L1MB3 LINE L1 915 1517 -4867 * 5677 194 57 22 chr1 158752652 158754730 -83909623 + L1MB3 LINE L1 3962 6120 -299 1020 151 6 0 chr1 158754729 158754901 -83909452 + L1 LINE L1 3994 4166 -1980 * 1311 208 7 7 chr1 158754901 158755185 -83909168 + L1MB3 LINE L1 6124 6416 -3 1139 113 9 81 chr1 158755196 158755418 -83908935 + L1MB8 LINE L1 5814 6019 -159 448 215 132 0 chr1 158755604 158755725 -83908628 + MIR SINE MIR 110 246 -16 25 0 0 0 chr1 158755800 158755825 -83908528 + AT_rich Low_complexity Low_complexity 1 25 0 547 172 40 0 chr1 158756473 158756572 -83907781 - AluSg/x SINE Alu -19 290 188 3854 92 61 13 chr1 158757065 158757622 -83906731 - LTR8 LTR ERV1 -107 584 1 1757 147 72 9 chr1 158757622 158757955 -83906398 - HUERS-P1 LTR ERV1 0 6263 5910 * 10784 95 16 54 chr1 158757939 158759475 -83904878 - HUERS-P1 LTR ERV1 -4630 1633 167 3320 153 130 35 chr1 158759475 158760229 -83904124 - LTR1B LTR ERV1 0 826 1 10784 95 16 54 chr1 158760229 158760390 -83903963 - HUERS-P1 LTR ERV1 -6096 167 1 1132 118 65 6 chr1 158760390 158760559 -83903794 - LTR8 LTR ERV1 0 691 513 1845 135 6 58 chr1 158760691 158761002 -83903351 + AluSx SINE Alu 1 295 -17 202 293 72 60 chr1 158762815 158762982 -83901371 - L2 LINE L2 -125 3188 3020 227 191 15 29 chr1 158763029 158763097 -83901256 + (TA)n Simple_repeat Simple_repeat 2 68 0 591 285 141 4 chr1 158764946 158765241 -83899112 + L2 LINE L2 2680 3011 -302 3577 230 50 9 chr1 158765241 158766219 -83898134 - L1MCb LINE L1 -2043 4521 3504 2225 111 0 0 chr1 158766220 158766508 -83897845 + AluSc SINE Alu 1 288 -21 1317 152 5 0 chr1 158766707 158766911 -83897442 - MER2 DNA MER2_type -138 207 3 1945 254 82 20 chr1 158766916 158767169 -83897184 - L1MCb LINE L1 -3126 3438 3202 2060 138 0 16 chr1 158767169 158767474 -83896879 - AluSx SINE Alu -12 300 1 1945 254 82 20 chr1 158767474 158767965 -83896388 - L1MCb LINE L1 -3362 3202 2648 3814 208 124 16 chr1 158767975 158769452 -83894901 - L1MCb LINE L1 -4087 2477 759 2256 157 35 32 chr1 158769452 158770000 -83894353 - MLT2A2 LTR ERVL 0 554 1 1516 214 29 32 chr1 158770001 158770380 -83893973 - L1MCb LINE L1 -5283 762 385 431 234 18 0 chr1 158770363 158770474 -83893879 - L1MB3 LINE L1 -112 6071 5959 * 1955 231 43 4 chr1 158770479 158770968 -83893385 - L1MB3 LINE L1 -296 5888 5381 777 216 7 0 chr1 158770969 158771122 -83893231 - MER46A DNA MER2_type 0 236 83 1135 188 33 50 chr1 158771130 158771370 -83892983 - L1M3f LINE L1 -5091 237 2 1381 268 149 48 chr1 158771830 158772561 -83891792 - L2 LINE L2 -794 2520 1716 1108 241 70 28 chr1 158772562 158772848 -83891505 + MER69 DNA AcHobo 2 299 -927 25 31 0 0 chr1 158772892 158772924 -83891429 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr1 158774752 158774782 -83889571 + AT_rich Low_complexity Low_complexity 1 30 0 1870 133 145 54 chr1 158776512 158776904 -83887449 + MSTC LTR MaLR 1 428 0 614 239 102 36 chr1 158777033 158777482 -83886871 - L1MEd LINE L1 -863 1627 1049 853 140 35 40 chr1 158777493 158777690 -83886663 - MER6 DNA MER2_type 0 865 -64 487 162 0 48 chr1 158777693 158777798 -83886555 - L1MEd LINE L1 -5083 1036 937 363 197 0 0 chr1 158778135 158778196 -83886157 - Charlie5 DNA MER1_type -2549 63 3 358 38 19 19 chr1 158778254 158778307 -83886046 - MADE1 DNA Mariner -26 54 2 633 197 0 0 chr1 158778310 158778432 -83885921 - L1ME LINE L1 -515 5647 5526 290 288 98 61 chr1 158778475 158778638 -83885715 - MER21B LTR ERV1 -371 492 324 353 237 73 17 chr1 158778710 158778887 -83885466 - L1MEd LINE L1 -5233 886 700 30 59 0 0 chr1 158778895 158778946 -83885407 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr1 158779098 158779121 -83885232 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr1 158779962 158779986 -83884367 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr1 158780050 158780074 -83884279 + AT_rich Low_complexity Low_complexity 1 24 0 246 274 16 0 chr1 158780947 158781009 -83883344 + MIR SINE MIR 56 118 -144 365 281 140 11 chr1 158781810 158781988 -83882365 - MIR SINE MIR -12 250 50 1321 113 192 0 chr1 158782256 158782496 -83881857 - AluSx SINE Alu -18 294 9 186 226 32 48 chr1 158782496 158782558 -83881795 + L3 LINE CR1 949 1009 -568 1626 163 16 4 chr1 158782566 158782823 -83881530 + AluJo SINE Alu 1 260 -52 21 0 0 0 chr1 158782834 158782855 -83881498 + AT_rich Low_complexity Low_complexity 1 21 0 2369 55 14 0 chr1 158783063 158783352 -83881001 + AluY SINE Alu 1 293 -18 23 33 0 0 chr1 158783896 158783926 -83880427 + AT_rich Low_complexity Low_complexity 1 30 0 34 0 0 0 chr1 158783992 158784026 -83880327 + AT_rich Low_complexity Low_complexity 1 34 0 487 277 39 39 chr1 158786182 158786337 -83878016 + MIR SINE MIR 23 177 -85 2247 71 24 0 chr1 158786583 158786880 -83877473 - L1PA8 LINE L1 -4 6168 5865 262 304 59 10 chr1 158787269 158787371 -83876982 + MIR SINE MIR 32 138 -124 196 268 72 21 chr1 158789322 158789419 -83874934 - MIR SINE MIR -4 258 157 919 238 57 0 chr1 158789436 158789684 -83874669 + MIR SINE MIR 1 262 0 322 230 63 16 chr1 158790681 158790807 -83873546 + L1ME4a LINE L1 5969 6100 -21 874 149 0 15 chr1 158790997 158791131 -83873222 + FLAM_C SINE Alu 1 132 -1 311 224 199 61 chr1 158791182 158791378 -83872975 + L1ME4a LINE L1 5846 6068 -53 1560 181 50 14 chr1 158791405 158791520 -83872833 + AluJo SINE Alu 2 111 -201 414 0 0 0 chr1 158791520 158791566 -83872787 + (CA)n Simple_repeat Simple_repeat 1 46 0 1560 181 50 14 chr1 158791566 158791731 -83872622 + AluJo SINE Alu 111 292 -20 216 0 0 0 chr1 158791732 158791756 -83872597 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr1 158791773 158791808 -83872545 + AT_rich Low_complexity Low_complexity 1 35 0 200 278 22 44 chr1 158792503 158792593 -83871760 + MIR SINE MIR 117 204 -58 1947 131 13 35 chr1 158793289 158793602 -83870751 - AluSx SINE Alu -6 306 1 413 283 117 0 chr1 158793622 158793767 -83870586 + MIR SINE MIR 68 229 -33 183 42 0 0 chr1 158793791 158793815 -83870538 + (ATG)n Simple_repeat Simple_repeat 3 26 0 277 250 311 0 chr1 158793946 158794078 -83870275 - MIR SINE MIR 0 262 90 2045 113 3 7 chr1 158796495 158796803 -83867550 + AluSx SINE Alu 3 309 0 190 324 56 28 chr1 158796860 158796931 -83867422 - L2 LINE L2 0 3272 3200 231 36 0 0 chr1 158797051 158797079 -83867274 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2020 110 45 7 chr1 158797963 158798253 -83866100 - AluSx SINE Alu -11 301 1 1712 146 0 71 chr1 158798396 158798732 -83865621 - AluJb SINE Alu 0 312 1 188 186 186 0 chr1 158798789 158798832 -83865521 - MER5B DNA MER1_type -3 175 125 966 168 19 19 chr1 158798837 158798998 -83865355 + FRAM SINE Alu 1 158 -18 218 246 29 29 chr1 158798999 158799068 -83865285 - MER5B DNA MER1_type -109 69 1 235 319 193 22 chr1 158799489 158799624 -83864729 + MIR SINE MIR 56 213 -49 2096 88 49 3 chr1 158800372 158800656 -83863697 - AluSq SINE Alu -16 297 1 553 290 79 19 chr1 158801192 158801406 -83862947 - MIR SINE MIR -1 261 35 2316 91 0 7 chr1 158801973 158802270 -83862083 + AluSq SINE Alu 1 295 -18 37 23 0 0 chr1 158802270 158802314 -83862039 + AT_rich Low_complexity Low_complexity 1 44 0 1887 157 7 3 chr1 158802314 158802607 -83861746 + AluSx SINE Alu 1 294 -18 301 312 119 61 chr1 158805556 158805867 -83858486 + L1M2 LINE L1 594 922 -5927 234 244 202 42 chr1 158907055 158907174 -83757179 - MER5B DNA MER1_type -16 162 25 291 336 148 36 chr1 158907457 158907680 -83756673 - L2 LINE L2 -195 3077 2830 957 266 118 17 chr1 158909154 158909664 -83754689 - MER20B DNA MER1_type -25 758 159 252 241 232 9 chr1 158909693 158909805 -83754548 + MER20B DNA MER1_type 1 137 -646 206 169 169 15 chr1 158912238 158912303 -83752050 - MER5A DNA MER1_type -114 75 1 2234 122 10 3 chr1 158912905 158913216 -83751137 - AluSq SINE Alu 0 313 1 602 243 66 22 chr1 158913253 158913434 -83750919 - MIR SINE MIR -72 190 2 21 0 0 0 chr1 158916430 158916451 -83747902 + AT_rich Low_complexity Low_complexity 1 21 0 345 295 0 116 chr1 158916478 158916651 -83747702 - L3 LINE CR1 -1 1576 1424 668 329 49 8 chr1 158916833 158917079 -83747274 - MIR SINE MIR -2 260 5 191 272 108 95 chr1 158917368 158917389 -83746964 + L2 LINE L2 1916 1935 -1379 284 284 37 0 chr1 158917389 158917470 -83746883 + MIR SINE MIR 53 136 -126 191 272 108 95 chr1 158917470 158917526 -83746827 + L2 LINE L2 1935 2075 -1239 1014 169 29 0 chr1 158918189 158918361 -83745992 - MER45A DNA AcHobo -1 177 1 499 329 0 13 chr1 158918414 158918572 -83745781 - L2 LINE L2 0 3272 3117 336 339 159 9 chr1 158919039 158919372 -83744981 + L2 LINE L2 1699 2081 -1233 389 288 9 18 chr1 158919531 158919642 -83744711 + MIR SINE MIR 153 262 0 25 0 0 0 chr1 158919753 158919778 -83744575 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 158919787 158919817 -83744536 + AT_rich Low_complexity Low_complexity 1 30 0 1946 140 46 0 chr1 158919826 158920130 -83744223 + AluSx SINE Alu 1 312 0 934 343 161 40 chr1 158920133 158921766 -83742587 - L2 LINE L2 -22 3250 1422 1680 160 13 70 chr1 158922757 158922884 -83741469 + AluJo SINE Alu 1 134 -178 426 39 0 0 chr1 158922884 158922936 -83741417 + (TA)n Simple_repeat Simple_repeat 2 53 0 1680 160 13 70 chr1 158922936 158923120 -83741233 + AluJo SINE Alu 134 294 -18 259 290 80 51 chr1 158923161 158923299 -83741054 + L3b LINE CR1 1422 1563 -20 428 326 22 50 chr1 158923920 158924101 -83740252 + MIR3 SINE MIR 15 190 -18 2272 172 69 21 chr1 158924233 158924709 -83739644 - MLT1D LTR MaLR -6 499 1 911 336 72 29 chr1 158924709 158925365 -83738988 + L2 LINE L2 2370 3059 -213 240 330 54 18 chr1 158925536 158925648 -83738705 + L2 LINE L2 3197 3312 -1 504 247 133 18 chr1 158925684 158925850 -83738503 + MIR SINE MIR 3 187 -75 556 326 17 11 chr1 158926084 158926262 -83738091 - MER5A DNA MER1_type -4 185 7 1174 195 98 49 chr1 158926270 158926598 -83737755 + MER2 DNA MER2_type 1 344 -1 343 332 75 27 chr1 158926637 158926824 -83737529 + L2 LINE L2 3046 3241 -31 1158 264 92 94 chr1 158926825 158927254 -83737099 + L2 LINE L2 2349 2818 -495 2286 101 0 7 chr1 158927254 158927550 -83736803 + AluSx SINE Alu 6 299 -13 1158 264 92 94 chr1 158927550 158927839 -83736514 + L2 LINE L2 2818 3106 -207 264 235 71 12 chr1 158928503 158928588 -83735765 + MIR SINE MIR 93 182 -80 727 150 16 0 chr1 158928588 158928715 -83735638 - MER58A DNA MER1_type 0 224 96 276 241 0 0 chr1 158928808 158928862 -83735491 - MER58A DNA MER1_type -35 72 19 183 250 0 45 chr1 158928885 158928929 -83735424 + L2 LINE L2 3213 3254 -18 583 332 106 0 chr1 158928980 158929206 -83735147 + MIR SINE MIR 6 255 -7 551 274 212 9 chr1 158929497 158929709 -83734644 + MIR SINE MIR 7 261 -1 209 338 62 0 chr1 158932700 158932780 -83731573 + L2 LINE L2 3159 3243 -29 1480 175 31 45 chr1 158933015 158933104 -83731249 + MLT1A1 LTR MaLR 5 94 -271 1353 0 0 0 chr1 158933104 158933254 -83731099 - L1PA2 LINE L1 -4 6151 6002 1480 175 31 45 chr1 158933254 158933519 -83730834 + MLT1A1 LTR MaLR 94 354 -11 314 285 76 57 chr1 158933765 158933923 -83730430 - MIR SINE MIR -91 171 11 181 362 0 14 chr1 158934048 158934117 -83730236 - L2 LINE L2 -240 3032 2965 474 317 99 28 chr1 158934698 158934982 -83729371 - MER102b DNA MER1_type 0 341 38 542 294 37 94 chr1 158935032 158935564 -83728789 - L2 LINE L2 -9 3263 2778 4449 253 75 56 chr1 158935883 158938204 -83726149 + L1MEc LINE L1 66 2431 -3965 846 243 49 15 chr1 158938197 158938460 -83725893 + L1ME1 LINE L1 5887 6158 -8 * 278 119 40 59 chr1 158938504 158938605 -83725748 + GA-rich Low_complexity Low_complexity 5 103 0 344 255 108 20 chr1 158943221 158943323 -83721030 - MER81 DNA DNA -2 112 2 328 338 128 7 chr1 158943420 158943568 -83720785 + L2 LINE L2 3104 3269 -3 22 0 0 0 chr1 158944055 158944077 -83720276 + AT_rich Low_complexity Low_complexity 1 22 0 222 235 20 0 chr1 158944284 158944335 -83720018 + L2 LINE L2 3217 3268 -4 219 269 77 48 chr1 158944726 158944830 -83719523 - MIR SINE MIR -49 213 107 308 306 136 0 chr1 158945514 158945661 -83718692 - MIR SINE MIR 0 262 96 1877 245 53 11 chr1 158945661 158946269 -83718084 + L1MC4a LINE L1 5356 5988 -1820 196 329 66 13 chr1 158946441 158946517 -83717836 - MIR SINE MIR -107 101 22 1500 132 11 31 chr1 158946560 158946758 -83717595 - L1P4 LINE L1 -532 5631 5439 2311 64 0 45 chr1 158946758 158947070 -83717283 - AluY SINE Alu -13 298 1 1500 132 11 31 chr1 158947070 158947158 -83717195 - L1P4 LINE L1 -724 5439 5351 1958 137 0 4 chr1 158949052 158949330 -83715023 - AluJb SINE Alu -35 277 1 1696 48 0 35 chr1 158950137 158950368 -83713985 + L1PA5 LINE L1 5932 6154 0 227 283 116 36 chr1 158950929 158951067 -83713286 + MIR SINE MIR 47 195 -67 2256 110 0 3 chr1 158951603 158951911 -83712442 - AluSx SINE Alu -5 307 1 6438 89 20 38 chr1 158952131 158953302 -83711051 - L1PA12 LINE L1 -1 6167 5011 1903 107 3 107 chr1 158953302 158953649 -83710704 - AluSx SINE Alu -1 311 1 6438 89 20 38 chr1 158953649 158953896 -83710457 - L1PA12 LINE L1 -1157 5011 4761 252 0 0 0 chr1 158954288 158954316 -83710037 + (TG)n Simple_repeat Simple_repeat 2 29 0 1575 159 55 3 chr1 158954922 158955230 -83709123 - MER33 DNA MER1_type 0 324 1 288 363 22 11 chr1 158955325 158955416 -83708937 - L2 LINE L2 -25 3247 3156 452 290 140 19 chr1 158956585 158956799 -83707554 + MIR SINE MIR 23 262 0 377 231 8 82 chr1 158957148 158957282 -83707071 - MER5C DNA MER1_type -200 124 1 22 0 0 0 chr1 158961428 158961450 -83702903 + AT_rich Low_complexity Low_complexity 1 22 0 2047 143 19 55 chr1 158961452 158961871 -83702482 - L1MD1 LINE L1 -6 6236 5833 4935 151 36 8 chr1 158961913 158963091 -83701262 - L1MA8 LINE L1 -26 6265 5059 485 259 18 65 chr1 158963307 158963477 -83700876 - L2 LINE L2 0 3313 3152 181 357 29 29 chr1 158963577 158963647 -83700706 - L2 LINE L2 -199 3073 3004 180 234 0 0 chr1 158964307 158964354 -83699999 + (TAG)n Simple_repeat Simple_repeat 1 47 0 1602 129 47 0 chr1 158964841 158965096 -83699257 + L1PB3 LINE L1 5879 6145 -9 537 167 49 42 chr1 158965109 158965253 -83699100 - MER96B DNA MER1_type? -109 308 164 3513 108 13 27 chr1 158965307 158965799 -83698554 - L1PA16 LINE L1 -9 6157 5672 2398 112 0 0 chr1 158965799 158966111 -83698242 - AluSx SINE Alu 0 312 1 3513 108 13 27 chr1 158966111 158966173 -83698180 - L1PA16 LINE L1 -494 5672 5611 1876 162 68 36 chr1 158966173 158966611 -83697742 - LTR2B LTR ERV1 -5 485 34 7064 175 23 26 chr1 158966632 158967364 -83696989 - L1PA16 LINE L1 -547 5619 4886 222 37 0 0 chr1 158967364 158967391 -83696962 + (TTG)n Simple_repeat Simple_repeat 1 27 0 7064 175 23 26 chr1 158967391 158968665 -83695688 - L1PA16 LINE L1 -1280 4886 3623 196 261 0 0 chr1 158969302 158969348 -83695005 + MIR SINE MIR 160 205 -57 336 217 12 0 chr1 158970076 158970159 -83694194 + L1MA8 LINE L1 6208 6291 0 208 310 248 0 chr1 158970177 158970306 -83694047 + MIR SINE MIR 9 169 -93 * 281 226 0 0 chr1 158970288 158970341 -83694012 + L2 LINE L2 3261 3313 0 192 313 133 0 chr1 158970344 158970427 -83693926 + MIR SINE MIR 156 249 -13 23 0 0 0 chr1 158973052 158973075 -83691278 + AT_rich Low_complexity Low_complexity 1 23 0 208 306 24 105 chr1 158973204 158973328 -83691025 - MER5A DNA MER1_type -21 168 55 331 35 0 86 chr1 158973342 158973400 -83690953 - MADE1 DNA Mariner -27 53 1 46 54 0 0 chr1 158973582 158973656 -83690697 + AT_rich Low_complexity Low_complexity 1 74 0 194 329 178 14 chr1 158973837 158973983 -83690370 + L3b LINE CR1 1278 1447 -136 21 36 0 0 chr1 158974067 158974095 -83690258 + AT_rich Low_complexity Low_complexity 1 28 0 193 333 13 13 chr1 158974977 158975052 -83689301 - L2 LINE L2 -1 3271 3197 691 134 126 0 chr1 158975163 158975282 -83689071 - AluJb SINE Alu -178 134 1 331 258 0 0 chr1 158975681 158975743 -83688610 - MER91B DNA MER1_type -127 63 2 189 280 20 0 chr1 158976156 158976206 -83688147 - L2 LINE L2 0 3313 3263 629 256 97 20 chr1 158976800 158976995 -83687358 - MIR SINE MIR -21 241 32 26 82 0 0 chr1 158977921 158977982 -83686371 + AT_rich Low_complexity Low_complexity 1 61 0 1224 271 49 22 chr1 158978072 158978578 -83685775 - L1M4 LINE L1 -2407 3739 3213 2375 76 13 13 chr1 158978578 158978881 -83685472 + AluSc SINE Alu 1 303 -6 1224 271 49 22 chr1 158978881 158978965 -83685388 - L1M4 LINE L1 -2933 3213 3133 * 2640 213 101 10 chr1 158978959 158979691 -83684662 - L1MDa LINE L1 -5530 1010 14 387 262 288 5 chr1 158981626 158981817 -83682536 + MIR SINE MIR 17 261 -1 1296 154 5 5 chr1 158982339 158982547 -83681806 - MER58A DNA MER1_type -15 209 2 275 333 173 19 chr1 158983168 158983330 -83681023 - MIR3 SINE MIR -5 203 17 26 88 0 0 chr1 158983396 158983464 -83680889 + AT_rich Low_complexity Low_complexity 1 68 0 192 200 0 0 chr1 158983994 158984039 -83680314 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 305 254 111 32 chr1 158984530 158984656 -83679697 - L2 LINE L2 0 3313 3178 472 223 91 34 chr1 158985438 158985613 -83678740 - MIR SINE MIR -3 259 75 886 199 19 0 chr1 158985826 158985987 -83678366 + FRAM SINE Alu 4 167 -9 441 159 88 0 chr1 158987236 158987349 -83677004 + L1MA7 LINE L1 6150 6272 -19 1262 90 18 27 chr1 158987349 158987560 -83676793 + L1P LINE L1 2769 2979 -3167 290 238 25 12 chr1 158987603 158987683 -83676670 - MLT1F LTR MaLR -444 98 18 789 237 17 11 chr1 158987911 158988088 -83676265 + MER45A DNA AcHobo 1 178 0 416 266 36 58 chr1 158988211 158988350 -83676003 - MIR3 SINE MIR -54 154 19 496 89 129 3 chr1 158990770 158990883 -83673470 - L1MB3 LINE L1 -6 6168 6049 13388 99 22 3 chr1 158993034 158995807 -83668546 - L1PA8 LINE L1 -2 6170 3348 206 130 22 43 chr1 158996158 158996204 -83668149 + CT-rich Low_complexity Low_complexity 1 45 0 6947 60 8 0 chr1 158996310 158997539 -83666814 - L1PA6 LINE L1 -1 6153 4921 298 198 167 52 chr1 158997622 158997718 -83666635 - MIR3 SINE MIR -21 187 81 314 190 170 50 chr1 158997723 158997823 -83666530 - MIR3 SINE MIR -21 187 76 16902 67 8 1 chr1 158997865 159000217 -83664136 - L1P LINE L1 -1195 4951 2584 1106 286 75 47 chr1 159000247 159001023 -83663330 - L2 LINE L2 -19 3294 2497 2305 93 7 3 chr1 159001117 159001419 -83662934 + AluSq SINE Alu 1 303 -10 1685 154 70 20 chr1 159001533 159001890 -83662463 + THE1C LTR MaLR 1 375 0 183 300 96 60 chr1 159002242 159002489 -83661864 + L2 LINE L2 1257 1521 -1793 3159 145 70 2 chr1 159002489 159003007 -83661346 - MER41C LTR ERV1 -1 553 1 183 300 96 60 chr1 159003007 159003092 -83661261 + L2 LINE L2 1521 1601 -1713 21 36 0 0 chr1 159003126 159003154 -83661199 + AT_rich Low_complexity Low_complexity 1 28 0 186 289 0 0 chr1 159003315 159003367 -83660986 - L2 LINE L2 -16 3297 3246 547 256 66 67 chr1 159003391 159003646 -83660707 - MIR SINE MIR 0 262 10 2443 55 3 0 chr1 159005490 159005781 -83658572 - AluSc SINE Alu -16 293 2 372 322 75 29 chr1 159006005 159006179 -83658174 - MIR3 SINE MIR 0 208 27 1792 38 5 0 chr1 159006379 159006591 -83657762 - AluY SINE Alu -15 296 84 1389 284 73 27 chr1 159007039 159007758 -83656595 - L2 LINE L2 -1 3312 2555 215 324 147 0 chr1 159008596 159008698 -83655655 + L2 LINE L2 3156 3272 0 * 226 264 38 85 chr1 159008697 159008803 -83655550 + MIR SINE MIR 84 184 -78 205 323 32 11 chr1 159009164 159009257 -83655096 + MIR3 SINE MIR 100 194 -14 321 333 23 8 chr1 159009340 159009472 -83654881 - L1M4 LINE L1 -1548 4598 4465 1115 262 79 69 chr1 159009554 159009738 -83654615 + L1MC4a LINE L1 5263 5444 -2364 2294 77 20 3 chr1 159009738 159010035 -83654318 - AluSc SINE Alu -7 302 1 1115 262 79 69 chr1 159010035 159010055 -83654298 + L1MC4a LINE L1 5444 5462 -2346 978 167 26 86 chr1 159010055 159010288 -83654065 - MER20 DNA MER1_type 0 219 1 1115 262 79 69 chr1 159010288 159010720 -83653633 + L1MC4a LINE L1 5462 5904 -1904 5061 143 59 3 chr1 159010822 159011739 -83652614 + L1MB5 LINE L1 5207 6174 0 2091 199 115 19 chr1 159011756 159012345 -83652008 - MLT1E2 LTR MaLR 0 626 1 1700 112 84 11 chr1 159012518 159012805 -83651548 - AluSx SINE Alu -4 308 1 390 173 142 47 chr1 159012998 159013125 -83651228 - Charlie1 DNA MER1_type -1 2760 2622 * 919 207 164 0 chr1 159013108 159013316 -83651037 - Charlie1 DNA MER1_type -2519 242 1 211 364 0 0 chr1 159013551 159013617 -83650736 + MER5A DNA MER1_type 123 188 -1 262 260 135 21 chr1 159016749 159016845 -83647508 + MIR3 SINE MIR 62 168 -40 242 228 53 0 chr1 159017409 159017466 -83646887 - L2 LINE L2 0 3313 3254 454 226 61 0 chr1 159018870 159018985 -83645368 + L2 LINE L2 3192 3313 0 191 302 19 0 chr1 159019331 159019384 -83644969 + L2 LINE L2 3213 3266 -6 1246 234 42 27 chr1 159020324 159020658 -83643695 - MER2 DNA MER2_type -4 340 2 212 191 24 0 chr1 159021312 159021354 -83642999 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 344 351 86 7 chr1 159021477 159021628 -83642725 - MIR3 SINE MIR -29 179 17 679 249 40 15 chr1 159021820 159022021 -83642332 + MIR SINE MIR 1 206 -56 225 162 76 152 chr1 159022311 159022416 -83641937 + LTR11 LTR ERV 348 444 -240 434 234 36 84 chr1 159022613 159022780 -83641573 + MIR SINE MIR 64 222 -40 1762 85 0 0 chr1 159022782 159022994 -83641359 - AluSc SINE Alu -21 288 77 219 69 0 0 chr1 159023439 159023468 -83640885 + (TC)n Simple_repeat Simple_repeat 1 29 0 378 0 0 0 chr1 159023468 159023510 -83640843 + (TG)n Simple_repeat Simple_repeat 1 42 0 349 302 62 0 chr1 159023868 159023964 -83640389 + MIR SINE MIR 48 149 -113 4667 24 0 0 chr1 159023974 159024687 -83639666 - L1P2 LINE L1 -364 5791 5079 318 50 0 0 chr1 159025571 159025611 -83638742 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 221 180 20 0 chr1 159025637 159025687 -83638666 + (TG)n Simple_repeat Simple_repeat 1 51 0 2185 111 0 0 chr1 159026195 159026483 -83637870 + AluSx SINE Alu 1 288 -24 568 284 98 15 chr1 159027478 159027813 -83636540 + L1ME4a LINE L1 5558 5920 -201 262 212 139 66 chr1 159027864 159028001 -83636352 + MIR SINE MIR 116 262 0 3184 142 4 30 chr1 159028332 159028869 -83635484 - L1MB3 LINE L1 -2 6181 5659 304 215 99 77 chr1 159029185 159029382 -83634971 - MIR SINE MIR -49 213 19 222 288 0 30 chr1 159029518 159029584 -83634769 + L2 LINE L2 3204 3267 -5 526 348 70 14 chr1 159029992 159030279 -83634074 + L2 LINE L2 2954 3256 -16 1855 124 72 4 chr1 159030675 159030979 -83633374 + AluSx SINE Alu 1 322 0 409 324 0 0 chr1 159031009 159031114 -83633239 - MIR SINE MIR -59 149 45 302 273 86 50 chr1 159031407 159031546 -83632807 - MIR SINE MIR -29 233 90 359 230 69 0 chr1 159034259 159034346 -83630007 + MIR SINE MIR 34 126 -136 242 306 36 36 chr1 159034774 159034885 -83629468 + L3 LINE CR1 1466 1576 -1 290 204 136 0 chr1 159035460 159035548 -83628805 + MER117 DNA MER1_type 41 140 -57 533 266 39 100 chr1 159036496 159036755 -83627598 + MIR SINE MIR 15 257 -5 326 380 33 0 chr1 159036845 159036995 -83627358 + MIR3 SINE MIR 33 187 -21 368 284 137 0 chr1 159037820 159037922 -83626431 - MIR3 SINE MIR -6 202 87 377 299 143 57 chr1 159038009 159038380 -83625973 + L2 LINE L2 2869 3271 -1 211 378 0 14 chr1 159038380 159038454 -83625899 - MIR3 SINE MIR -121 87 15 1081 212 122 0 chr1 159038845 159039090 -83625263 + ORSL DNA AcHobo 1 275 0 227 75 100 0 chr1 159039597 159039637 -83624716 - L2 LINE L2 -1 3312 3269 2174 105 0 23 chr1 159040081 159040385 -83623968 + AluSg SINE Alu 1 297 -13 251 345 135 23 chr1 159040415 159040544 -83623809 - MIR3 SINE MIR -46 162 20 330 26 0 0 chr1 159040956 159040995 -83623358 + (TG)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chr1 159041110 159041141 -83623212 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr1 159041254 159041281 -83623072 + (TG)n Simple_repeat Simple_repeat 2 28 0 315 0 0 0 chr1 159041589 159041624 -83622729 + (TG)n Simple_repeat Simple_repeat 2 36 0 495 291 234 4 chr1 159042121 159042348 -83622005 + Charlie2 DNA MER1_type 47 325 -2537 2753 225 90 22 chr1 159042349 159043291 -83621062 + Charlie2 DNA MER1_type 1855 2860 -2 181 143 29 29 chr1 159044011 159044046 -83620307 - MIR SINE MIR -83 125 91 2025 122 41 0 chr1 159044633 159044928 -83619425 + AluSx SINE Alu 6 312 0 202 315 181 37 chr1 159045156 159045559 -83618794 + L2 LINE L2 1701 2161 -1153 244 313 125 0 chr1 159045724 159045820 -83618533 + L2 LINE L2 3161 3268 -4 766 318 24 47 chr1 159045966 159046460 -83617893 - L2 LINE L2 -81 3232 2743 1811 128 8 4 chr1 159046460 159046717 -83617636 + AluSx SINE Alu 1 258 -54 1471 195 31 0 chr1 159046875 159047132 -83617221 - AluJo SINE Alu -32 280 16 1995 146 3 0 chr1 159048055 159048356 -83615997 - AluSx SINE Alu -10 302 1 540 268 32 6 chr1 159049509 159049666 -83614687 - MIR SINE MIR 0 262 102 234 353 78 18 chr1 159049900 159050067 -83614286 + MIR SINE MIR 12 188 -74 931 252 58 0 chr1 159050920 159051162 -83613191 + MIR SINE MIR 7 262 0 645 210 139 67 chr1 159051554 159051660 -83612693 + MIR SINE MIR 8 105 -157 2197 127 44 41 chr1 159051660 159052023 -83612330 + THE1B LTR MaLR 1 364 0 645 210 139 67 chr1 159052023 159052154 -83612199 + MIR SINE MIR 105 262 0 1691 163 31 37 chr1 159052288 159052582 -83611771 - AluJb SINE Alu -20 292 1 283 291 0 20 chr1 159052702 159052804 -83611549 + L1MA8 LINE L1 62 1048 -6050 3173 236 58 76 chr1 159053773 159054641 -83609712 + L1MA8 LINE L1 1539 2083 -5084 2004 133 7 7 chr1 159054641 159054941 -83609412 + AluSx SINE Alu 1 300 -12 3173 236 58 76 chr1 159054941 159055834 -83608519 + L1MA8 LINE L1 2083 2990 -4177 * 7653 140 39 74 chr1 159055819 159057174 -83607179 + L1MA8 LINE L1 4768 6169 -1143 764 23 0 0 chr1 159057174 159057261 -83607092 + AluY SINE Alu 216 302 -9 7653 140 39 74 chr1 159057261 159057492 -83606861 + L1MA8 LINE L1 6169 6406 -906 228 111 0 0 chr1 159057492 159057528 -83606825 + (CA)n Simple_repeat Simple_repeat 1 36 0 7653 140 39 74 chr1 159057528 159057705 -83606648 + L1MA8 LINE L1 6406 6588 -724 2217 98 0 26 chr1 159057705 159058011 -83606342 + AluY SINE Alu 1 298 -13 7653 140 39 74 chr1 159058011 159058342 -83606011 + L1MA8 LINE L1 6588 6838 -474 2353 86 3 13 chr1 159058342 159058655 -83605698 + AluSp SINE Alu 1 310 -3 7653 140 39 74 chr1 159058655 159058941 -83605412 + L1MA8 LINE L1 6838 7132 -180 342 244 13 0 chr1 159058941 159059019 -83605334 + Tigger5 DNA MER2_type 1 79 -2244 448 171 0 0 chr1 159059021 159059091 -83605262 - Tigger5 DNA MER2_type -12 2311 2242 * 470 176 0 35 chr1 159059081 159059166 -83605187 + Tigger5 DNA MER2_type 2242 2323 0 1015 117 18 12 chr1 159059166 159059337 -83605016 + L1MA8 LINE L1 6110 6281 -10 183 80 0 0 chr1 159059348 159059373 -83604980 + (CATA)n Simple_repeat Simple_repeat 1 25 0 214 299 97 56 chr1 159059561 159059705 -83604648 + L2 LINE L2 3154 3303 -10 7363 26 1 2 chr1 159060010 159060820 -83603533 + L1PA5 LINE L1 5337 6145 -9 241 242 111 40 chr1 159061164 159061263 -83603090 - L1ME4a LINE L1 0 6121 6016 216 269 0 0 chr1 159061387 159061454 -83602899 + (TA)n Simple_repeat Simple_repeat 2 68 0 423 301 68 12 chr1 159061914 159062077 -83602276 - L2 LINE L2 0 3272 3101 288 265 13 151 chr1 159062496 159062734 -83601619 - MIR SINE MIR -11 251 47 1085 127 0 0 chr1 159063037 159063194 -83601159 - AluSg/x SINE Alu -1 309 153 1965 155 76 33 chr1 159063657 159064032 -83600321 + L1M2 LINE L1 4979 5382 -893 1967 164 7 0 chr1 159064032 159064337 -83600016 + AluSx SINE Alu 1 307 -5 1965 155 76 33 chr1 159064337 159064495 -83599858 + L1M2 LINE L1 5382 5532 -743 510 125 0 0 chr1 159064930 159065010 -83599343 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1909 149 7 7 chr1 159065010 159065305 -83599048 - AluJo SINE Alu -17 295 1 2176 121 14 0 chr1 159065913 159066210 -83598143 + AluSq SINE Alu 1 301 -12 22 56 0 0 chr1 159066350 159066386 -83597967 + AT_rich Low_complexity Low_complexity 1 36 0 690 304 53 33 chr1 159067242 159067692 -83596661 - L1ME4a LINE L1 -171 5950 5492 1070 180 59 70 chr1 159067927 159068183 -83596170 + L1MC1 LINE L1 6 258 -6168 4324 150 151 14 chr1 159068184 159068859 -83595494 + L1MC1 LINE L1 792 1637 -4789 2588 169 17 30 chr1 159068859 159069322 -83595031 - MSTB2 LTR MaLR 0 457 1 4324 150 151 14 chr1 159069322 159069597 -83594756 + L1MC1 LINE L1 1637 1873 -4553 897 223 15 0 chr1 159069577 159069774 -83594579 + L1MC1 LINE L1 4736 4935 -1491 * 1276 205 189 0 chr1 159069775 159070082 -83594271 + MLT1A1 LTR MaLR 1 365 0 6489 176 27 14 chr1 159070084 159071718 -83592635 + L1MC1 LINE L1 4955 6612 -1 312 48 0 0 chr1 159072448 159072490 -83591863 + (TG)n Simple_repeat Simple_repeat 1 42 0 1998 160 0 0 chr1 159072493 159072805 -83591548 - AluJb SINE Alu 0 312 1 262 232 0 0 chr1 159072834 159072890 -83591463 + MIR SINE MIR 80 135 -127 1360 265 90 32 chr1 159072923 159073715 -83590638 + L1M4 LINE L1 3788 4625 -1521 412 333 31 16 chr1 159073720 159073849 -83590504 - L2 LINE L2 -2 3311 3181 282 323 16 47 chr1 159073905 159074032 -83590321 - MIR SINE MIR -120 142 20 184 300 14 71 chr1 159075075 159075145 -83589208 + MIR SINE MIR 5 70 -192 289 119 0 85 chr1 159075145 159075204 -83589149 + U2 snRNA snRNA 1 54 -134 221 244 49 24 chr1 159075246 159075328 -83589025 + MIR SINE MIR 179 262 0 814 159 32 0 chr1 159075602 159075728 -83588625 + FLAM_C SINE Alu 2 131 -2 27613 122 14 72 chr1 159076130 159081194 -83583159 + L1P LINE L1 12 4782 -1364 37607 92 28 29 chr1 159081194 159087617 -83576736 + HERV9 LTR ERV1 17 4974 0 914 125 121 18 chr1 159087617 159087856 -83576497 + HERV9 LTR ERV1 873 1139 -5757 329 180 0 0 chr1 159087857 159087918 -83576435 + HERV9 LTR ERV1 7504 7564 -835 * 2167 97 10 0 chr1 159087914 159088203 -83576150 + HERV9 LTR ERV1 7789 8080 -319 * 4696 86 144 138 chr1 159088196 159089568 -83574785 + pTR5 LTR ERV1 897 2438 0 7643 48 7 0 chr1 159089571 159090927 -83573426 + L1PA7 LINE L1 4779 6141 -13 2189 115 3 0 chr1 159091533 159091828 -83572525 - AluSx SINE Alu -16 296 1 278 258 0 0 chr1 159092082 159092144 -83572209 + L2 LINE L2 3252 3313 0 189 94 0 0 chr1 159092450 159092482 -83571871 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 372 127 34 34 chr1 159092510 159092750 -83571603 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 1576 164 4 11 chr1 159092750 159093013 -83571340 - AluJo SINE Alu -31 281 21 26 50 0 0 chr1 159093023 159093063 -83571290 + AT_rich Low_complexity Low_complexity 1 40 0 2924 9 0 3 chr1 159093244 159093563 -83570790 + AluYb8 SINE Alu 1 318 0 1283 212 48 65 chr1 159093682 159094079 -83570274 + MLT1B LTR MaLR 1 390 0 1859 194 45 20 chr1 159094163 159094519 -83569834 + MLT1A1 LTR MaLR 1 365 0 2182 102 20 0 chr1 159095505 159095799 -83568554 + AluSx SINE Alu 1 300 -12 574 290 142 51 chr1 159096816 159097422 -83566931 - L2 LINE L2 -15 3298 2644 719 275 39 21 chr1 159097453 159097686 -83566667 - MIR SINE MIR -13 249 13 253 247 55 14 chr1 159098809 159098882 -83565471 + MLT1H LTR MaLR 1 76 -473 345 265 112 0 chr1 159099168 159099266 -83565087 + MLT1H LTR MaLR 441 549 0 280 275 66 93 chr1 159099328 159099421 -83564932 - MER112 DNA MER1_type -9 251 157 2395 94 3 0 chr1 159099421 159099729 -83564624 + AluSx SINE Alu 1 309 -3 280 275 66 93 chr1 159099729 159099893 -83564460 - MER112 DNA MER1_type -103 157 1 282 312 37 37 chr1 159101255 159101364 -83562989 - L2 LINE L2 -5 3308 3200 426 116 0 14 chr1 159102781 159102850 -83561503 - Alu SINE Alu -5 307 240 2295 113 0 7 chr1 159102933 159103243 -83561110 - AluSq SINE Alu -5 308 1 415 255 179 35 chr1 159103696 159104037 -83560316 + L1ME4a LINE L1 5732 6121 0 1551 177 3 51 chr1 159104060 159104376 -83559977 + AluJo SINE Alu 2 302 -10 835 179 11 45 chr1 159104376 159104545 -83559808 + FRAM SINE Alu 9 165 -11 2089 120 17 3 chr1 159104551 159104852 -83559501 + AluSx SINE Alu 1 305 -7 817 175 31 93 chr1 159105796 159105837 -83558516 - AluJo SINE Alu -8 304 262 2000 111 31 7 chr1 159105837 159106125 -83558228 + AluSg SINE Alu 1 295 -15 817 175 31 93 chr1 159106125 159106277 -83558076 - AluJo SINE Alu -50 262 123 2204 81 41 3 chr1 159106562 159106857 -83557496 + AluSg SINE Alu 1 306 -4 604 279 158 58 chr1 159107247 159107645 -83556708 - L2 LINE L2 -20 3293 2856 497 272 292 4 chr1 159107759 159108016 -83556337 - L2 LINE L2 -685 2629 2299 224 269 15 30 chr1 159108080 159108147 -83556206 + L2 LINE L2 3200 3265 -7 238 148 37 19 chr1 159108567 159108621 -83555732 + Alu SINE Alu 248 302 0 198 103 0 0 chr1 159110473 159110502 -83553851 + (T)n Simple_repeat Simple_repeat 1 29 0 228 306 60 8 chr1 159112522 159112656 -83551697 + MER104 DNA Tc2 3 143 -37 243 250 179 0 chr1 159112757 159112841 -83551512 - MIR SINE MIR -1 261 163 554 206 84 115 chr1 159112933 159113206 -83551147 - MER20B DNA MER1_type 0 783 520 2345 115 6 12 chr1 159113206 159113544 -83550809 + MER1B DNA MER1_type 1 336 -1 554 206 84 115 chr1 159113544 159113591 -83550762 - MER20B DNA MER1_type -263 520 473 2011 123 9 28 chr1 159113918 159114235 -83550118 + AluSx SINE Alu 1 311 -1 236 284 40 0 chr1 159114403 159114477 -83549876 + MIR SINE MIR 120 196 -66 21 0 0 0 chr1 159114519 159114540 -83549813 + AT_rich Low_complexity Low_complexity 1 21 0 2418 133 18 60 chr1 159115772 159116224 -83548129 - Tigger2a DNA MER2_type -1 433 1 384 370 44 0 chr1 159116294 159116429 -83547924 - MER91A DNA MER1_type -4 192 52 1998 158 115 18 chr1 159116692 159117134 -83547219 - MER31A LTR ERV1 0 485 1 21 0 0 0 chr1 159118265 159118286 -83546067 + AT_rich Low_complexity Low_complexity 1 21 0 3591 147 152 10 chr1 159118572 159119295 -83545058 + LTR1B LTR ERV1 1 826 0 186 133 0 0 chr1 159119835 159119865 -83544488 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1543 208 0 0 chr1 159120318 159120607 -83543746 + AluJo SINE Alu 1 289 -23 252 326 89 15 chr1 159120705 159120840 -83543513 - L2 LINE L2 -3 3310 3166 251 220 0 0 chr1 159121604 159121654 -83542699 - L2 LINE L2 -16 3297 3248 243 182 61 61 chr1 159121644 159121710 -83542643 - MER5A DNA MER1_type -95 94 29 * 4405 134 86 19 chr1 159121826 159122258 -83542095 - MER4D LTR ERV1 0 903 501 2432 81 0 0 chr1 159122258 159122556 -83541797 + AluSg SINE Alu 2 299 -11 4405 134 86 19 chr1 159122556 159122963 -83541390 - MER4D LTR ERV1 -402 501 8 21 0 0 0 chr1 159123111 159123132 -83541221 + AT_rich Low_complexity Low_complexity 1 21 0 2021 145 0 0 chr1 159123155 159123452 -83540901 + AluSg SINE Alu 1 297 -13 452 78 0 0 chr1 159123588 159123652 -83540701 + L1P LINE L1 3812 3875 -2271 1639 57 0 5 chr1 159123652 159123857 -83540496 + L1PA6 LINE L1 5944 6152 -2 320 156 78 0 chr1 159124726 159124803 -83539550 + MER53 DNA DNA 94 176 -13 * 367 193 0 0 chr1 159124743 159124826 -83539527 - MER53 DNA DNA -106 83 1 614 285 84 80 chr1 159125144 159125335 -83539018 - L2 LINE L2 -1229 2085 1896 1453 162 22 100 chr1 159125335 159125468 -83538885 + AluYb8 SINE Alu 1 143 -175 2187 111 3 7 chr1 159125468 159125766 -83538587 + AluSx SINE Alu 1 297 -15 1453 162 22 100 chr1 159125766 159125953 -83538400 + AluYb8 SINE Alu 143 296 -22 614 285 84 80 chr1 159125953 159126213 -83538140 - L2 LINE L2 -1418 1896 1632 6224 29 0 0 chr1 159126243 159127003 -83537350 - L1PA4 LINE L1 -6 6149 5390 1766 239 55 57 chr1 159127050 159127599 -83536754 - L2 LINE L2 -1668 1646 1099 1507 186 35 21 chr1 159128186 159128476 -83535877 + AluJb SINE Alu 1 294 -18 300 223 150 86 chr1 159128964 159129150 -83535203 - L1ME LINE L1 -306 5815 5611 2312 119 0 0 chr1 159129150 159129460 -83534893 - AluSq SINE Alu -3 310 1 300 223 150 86 chr1 159129460 159129493 -83534860 - L1ME LINE L1 -510 5611 5582 1518 162 39 4 chr1 159129933 159130192 -83534161 + AluJo SINE Alu 30 297 -15 667 286 57 94 chr1 159130217 159130990 -83533363 - L1ME LINE L1 -1092 5054 4318 681 252 32 52 chr1 159131081 159131335 -83533018 + MIR SINE MIR 4 256 -6 447 78 0 0 chr1 159132565 159132629 -83531724 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 2388 307 108 19 chr1 159132786 159133239 -83531114 + L2 LINE L2 1754 2165 -1148 1633 200 0 3 chr1 159133239 159133539 -83530814 - AluJb SINE Alu -13 299 1 2388 307 108 19 chr1 159133539 159134524 -83529829 + L2 LINE L2 2165 3313 0 292 323 8 55 chr1 159134679 159134806 -83529547 + L2 LINE L2 2915 3035 -237 1042 129 0 0 chr1 159135370 159135517 -83528836 + AluSg/x SINE Alu 147 293 -19 2042 139 0 7 chr1 159136159 159136453 -83527900 - AluSx SINE Alu -20 292 1 627 186 50 0 chr1 159136845 159136985 -83527368 - L1MA10 LINE L1 -13 6321 6175 1066 200 33 33 chr1 159137038 159137343 -83527010 - L1ME2 LINE L1 -169 5995 5691 2067 148 23 0 chr1 159137351 159137696 -83526657 - MLT2C1 LTR ERVL -43 354 2 805 216 6 6 chr1 159137709 159137885 -83526468 - L1ME2 LINE L1 -490 5676 5501 646 200 0 33 chr1 159138346 159138466 -83525887 - FRAM SINE Alu -53 123 8 3077 209 39 21 chr1 159138832 159139622 -83524731 - L1MD2 LINE L1 -19 6340 5537 402 351 54 17 chr1 159139633 159139872 -83524481 + L2 LINE L2 2258 2505 -809 1962 257 71 19 chr1 159141414 159142009 -83522344 - MLT1E2 LTR MaLR 0 626 1 351 211 0 28 chr1 159142034 159142105 -83522248 - L2 LINE L2 0 3272 3204 2032 137 13 10 chr1 159142514 159142820 -83521533 + AluSx SINE Alu 1 307 -5 2782 16 0 0 chr1 159142820 159143128 -83521225 + AluY SINE Alu 1 308 -3 4652 166 11 5 chr1 159143382 159144227 -83520126 + L1MC1 LINE L1 5476 6325 -8 447 253 77 72 chr1 159144251 159144411 -83519942 - MIR SINE MIR -13 249 91 2310 87 119 0 chr1 159144411 159144746 -83519607 + THE1C LTR MaLR 1 375 0 9742 116 42 27 chr1 159144746 159145773 -83518580 + THE1C-int LTR MaLR 1 1060 -520 2311 80 10 7 chr1 159145773 159146072 -83518281 - AluY SINE Alu -11 300 1 9742 116 42 27 chr1 159146072 159146601 -83517752 + THE1C-int LTR MaLR 1060 1580 0 2314 90 104 23 chr1 159146603 159146948 -83517405 + THE1C LTR MaLR 3 375 0 447 253 77 72 chr1 159146948 159147004 -83517349 - MIR SINE MIR -171 91 28 2109 252 69 35 chr1 159147267 159147663 -83516690 + L1ME LINE L1 1 382 -5701 2214 110 0 0 chr1 159147663 159147955 -83516398 - AluSq SINE Alu -21 292 1 2109 252 69 35 chr1 159147955 159148549 -83515804 + L1ME LINE L1 382 1042 -5041 204 291 0 0 chr1 159148739 159148794 -83515559 - L2 LINE L2 -9 3263 3209 2287 117 3 0 chr1 159148881 159149190 -83515163 + AluSp SINE Alu 1 310 -3 315 269 252 11 chr1 159149515 159149697 -83514656 - L1MC/D LINE L1 -390 5731 5566 332 240 77 48 chr1 159150272 159150376 -83513977 - MIR SINE MIR -109 153 47 26 0 0 0 chr1 159150903 159150929 -83513424 + AT_rich Low_complexity Low_complexity 1 26 0 252 247 67 17 chr1 159151165 159151323 -83513030 - L1ME LINE L1 -370 5751 5593 358 328 103 6 chr1 159151424 159151598 -83512755 + L1MEd LINE L1 6 196 -5923 3003 256 103 32 chr1 159151628 159153021 -83511332 - L1MC4a LINE L1 -422 7386 5895 1140 259 25 3 chr1 159153056 159153381 -83510972 - L1MC4a LINE L1 -2002 5806 5475 210 167 0 0 chr1 159153984 159154020 -83510333 + T-rich Low_complexity Low_complexity 1 36 0 2141 170 63 5 chr1 159154283 159154694 -83509659 + Tigger1 DNA MER2_type 1 435 -1983 671 71 0 20 chr1 159154692 159154791 -83509562 - Tigger1 DNA MER2_type -1273 1145 1049 * 5736 144 24 13 chr1 159154798 159155471 -83508882 + Tigger1 DNA MER2_type 433 1124 -1294 2462 70 3 0 chr1 159155471 159155773 -83508580 + AluY SINE Alu 1 303 -8 5736 144 24 13 chr1 159155773 159156133 -83508220 + Tigger1 DNA MER2_type 1124 1478 -940 724 248 6 19 chr1 159156135 159156296 -83508057 + FRAM SINE Alu 1 159 -17 4422 113 44 14 chr1 159156296 159157024 -83507329 + Tigger1 DNA MER2_type 1471 2220 -198 914 131 91 0 chr1 159157035 159157211 -83507142 + Tigger1 DNA MER2_type 522 713 -1705 777 202 0 69 chr1 159157214 159157417 -83506936 + Tigger1 DNA MER2_type 2230 2418 0 242 242 21 32 chr1 159157455 159157550 -83506803 - L1MC/D LINE L1 -2062 5746 5653 478 210 38 25 chr1 159157578 159157735 -83506618 + MER103 DNA DNA 4 162 -4 382 241 11 11 chr1 159158309 159158396 -83505957 - MIR SINE MIR -119 143 57 337 267 30 59 chr1 159159343 159159478 -83504875 - L1MC/D LINE L1 -2441 3705 3575 2186 115 0 0 chr1 159159503 159159799 -83504554 + AluSx SINE Alu 5 300 -12 358 262 36 0 chr1 159160194 159160278 -83504075 - L2 LINE L2 0 3313 3227 605 335 47 4 chr1 159160549 159160782 -83503571 + MIR SINE MIR 8 250 -12 2191 91 17 3 chr1 159161151 159161438 -83502915 - AluSc SINE Alu -18 291 1 2288 209 28 34 chr1 159161439 159161522 -83502831 + MLT1E2 LTR MaLR 3 85 -541 2233 107 53 28 chr1 159161522 159161877 -83502476 + THE1B LTR MaLR 1 364 0 2288 209 28 34 chr1 159161877 159162433 -83501920 + MLT1E2 LTR MaLR 85 624 -2 1115 273 90 26 chr1 159162477 159162866 -83501487 + LTR16C LTR ERVL 78 491 0 457 323 124 5 chr1 159162992 159163209 -83501144 + MIR SINE MIR 20 262 0 190 276 17 17 chr1 159163364 159163422 -83500931 - MIR SINE MIR -79 129 72 2153 96 3 0 chr1 159163453 159163755 -83500598 - AluSq SINE Alu 0 303 1 539 316 7 13 chr1 159164797 159164949 -83499404 + MER5A DNA MER1_type 35 185 -4 236 140 0 40 chr1 159166386 159166436 -83497917 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 1047 168 139 113 chr1 159166436 159166889 -83497464 - MER4C LTR ERV1 0 465 1 484 139 47 0 chr1 159166895 159167067 -83497286 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr1 159167073 159167094 -83497259 + AT_rich Low_complexity Low_complexity 1 21 0 873 231 89 34 chr1 159167566 159167821 -83496532 + MIR SINE MIR 12 261 -1 2388 103 0 3 chr1 159168769 159169080 -83495273 - AluSx SINE Alu -2 310 1 297 229 42 0 chr1 159169137 159169233 -83495120 - L1ME4a LINE L1 -33 6088 5989 2417 81 10 0 chr1 159169331 159169640 -83494713 - AluSp SINE Alu -1 312 1 22 35 0 0 chr1 159169752 159169781 -83494572 + AT_rich Low_complexity Low_complexity 1 29 0 389 243 58 0 chr1 159170848 159170951 -83493402 - MER20 DNA MER1_type 0 219 111 552 293 11 17 chr1 159170970 159171144 -83493209 + MIR SINE MIR 87 259 -3 230 221 59 0 chr1 159171964 159172032 -83492321 + L1MC4 LINE L1 6614 6685 -1357 289 188 25 0 chr1 159172045 159172125 -83492228 + (TA)n Simple_repeat Simple_repeat 1 82 0 593 260 188 10 chr1 159172676 159172884 -83491469 + MIR SINE MIR 4 248 -14 341 302 7 60 chr1 159172969 159173118 -83491235 + MIR3 SINE MIR 37 177 -31 974 185 19 28 chr1 159173122 159173333 -83491020 + MER3 DNA MER1_type 1 209 0 29 28 0 0 chr1 159173669 159173705 -83490648 + AT_rich Low_complexity Low_complexity 1 36 0 205 243 0 43 chr1 159177251 159177321 -83487032 + GA-rich Low_complexity Low_complexity 1 67 0 269 261 154 0 chr1 159177914 159177979 -83486374 - MER91C DNA MER1_type -33 107 33 356 320 50 27 chr1 159178104 159178326 -83486027 + Charlie8 DNA MER1_type 38 264 -2153 2062 117 26 23 chr1 159178990 159179298 -83485055 - AluSg SINE Alu -1 309 1 694 229 36 0 chr1 159179301 159179441 -83484912 - MIR SINE MIR -105 157 13 1222 180 67 14 chr1 159179488 159179772 -83484581 - L1MC2 LINE L1 0 6344 6046 42 36 0 0 chr1 159181646 159181702 -83482651 + AT_rich Low_complexity Low_complexity 1 56 0 1255 196 87 3 chr1 159181894 159182239 -83482114 + MLT2B1 LTR ERVL 55 482 -33 300 53 0 0 chr1 159182239 159182277 -83482076 + (CA)n Simple_repeat Simple_repeat 2 39 0 1255 196 87 3 chr1 159182277 159182315 -83482038 + MLT2B1 LTR ERVL 482 515 0 646 305 26 0 chr1 159182428 159182579 -83481774 + L2 LINE L2 3118 3272 0 180 261 171 0 chr1 159182577 159182665 -83481688 + L3 LINE CR1 1326 1428 -149 * 2435 89 0 0 chr1 159183009 159183313 -83481040 + AluSc SINE Alu 2 305 -4 534 236 40 27 chr1 159183379 159183527 -83480826 + MER69 DNA AcHobo 1 150 -2376 236 263 40 26 chr1 159183521 159183597 -83480756 + MER69 DNA AcHobo 2450 2526 0 * 214 322 9 70 chr1 159183599 159183714 -83480639 - MER5B DNA MER1_type -70 108 1 4055 132 46 33 chr1 159184055 159184773 -83479580 - LTR8A LTR ERV1 0 727 1 2230 126 0 3 chr1 159184816 159185125 -83479228 + AluSx SINE Alu 5 312 0 824 325 83 54 chr1 159185173 159185596 -83478757 - L2 LINE L2 -2356 958 504 189 0 0 0 chr1 159185596 159185617 -83478736 + (TG)n Simple_repeat Simple_repeat 2 22 0 824 325 83 54 chr1 159185617 159185919 -83478434 - L2 LINE L2 -2810 504 212 232 225 84 99 chr1 159186315 159186457 -83477896 - L3 LINE CR1 -232 1345 1206 1331 154 70 35 chr1 159186471 159186565 -83477788 - L1MB5 LINE L1 0 6174 6085 2920 127 2 2 chr1 159186565 159186989 -83477364 + MSTA LTR MaLR 1 424 -4 1331 154 70 35 chr1 159186989 159187180 -83477173 - L1MB5 LINE L1 -89 6085 5879 3235 86 12 20 chr1 159187180 159187671 -83476682 + LTR15 LTR ERV1 1 487 -6 1668 232 186 33 chr1 159187683 159188286 -83476067 - L2 LINE L2 -795 2519 1825 1007 168 11 42 chr1 159188288 159188478 -83475875 + AluJo SINE Alu 86 269 -43 202 268 0 18 chr1 159188515 159188571 -83475782 - L2 LINE L2 -1482 1832 1778 607 293 33 33 chr1 159188656 159188767 -83475586 + MIR SINE MIR 3 116 -146 15919 92 7 3 chr1 159188767 159191815 -83472538 - L1PA7 LINE L1 -3 6151 3095 607 293 33 33 chr1 159191815 159191915 -83472438 + MIR SINE MIR 115 214 -48 311 235 0 17 chr1 159192394 159192509 -83471844 + GA-rich Low_complexity Low_complexity 2 114 0 269 203 27 27 chr1 159192526 159192600 -83471753 + GA-rich Low_complexity Low_complexity 2 75 0 195 271 0 0 chr1 159192668 159192738 -83471615 + G-rich Low_complexity Low_complexity 4 73 0 183 233 17 67 chr1 159193099 159193159 -83471194 + L3 LINE CR1 233 289 -1288 962 71 0 0 chr1 159193205 159193331 -83471022 - L1PA5 LINE L1 -3 6151 6026 510 252 61 0 chr1 159194595 159194710 -83469643 - L2 LINE L2 -5 3308 3187 346 329 43 7 chr1 159195393 159195574 -83468779 + MIR3 SINE MIR 15 201 -7 23 0 0 0 chr1 159196396 159196419 -83467934 + AT_rich Low_complexity Low_complexity 1 23 0 241 373 133 15 chr1 159197534 159197797 -83466556 + L2 LINE L2 2952 3245 -27 282 356 12 31 chr1 159198532 159198692 -83465661 + L2 LINE L2 2563 2719 -595 652 302 60 40 chr1 159199381 159199633 -83464720 - MIR SINE MIR -5 257 1 204 330 107 40 chr1 159201295 159201519 -83462834 + L2 LINE L2 1706 1944 -1370 313 230 54 14 chr1 159201563 159201637 -83462716 + L2 LINE L2 3186 3262 -10 2167 116 0 3 chr1 159203158 159203450 -83460903 - AluSc SINE Alu -18 291 1 2439 74 3 0 chr1 159203967 159204264 -83460089 + AluSg SINE Alu 1 298 -12 1888 143 27 3 chr1 159205339 159205633 -83458720 + AluJb SINE Alu 1 301 -11 240 149 0 0 chr1 159205849 159205896 -83458457 + (TG)n Simple_repeat Simple_repeat 2 48 0 225 0 0 0 chr1 159205908 159205933 -83458420 + (GA)n Simple_repeat Simple_repeat 2 26 0 436 329 72 13 chr1 159206680 159206917 -83457436 - MIR SINE MIR -10 252 2 366 242 0 0 chr1 159207042 159207133 -83457220 + LTR30 LTR ERV1 523 613 -109 646 319 158 39 chr1 159208709 159209752 -83454601 - L2 LINE L2 -450 2864 1698 570 309 98 17 chr1 159210790 159211026 -83453327 - MIR SINE MIR 0 262 8 2012 138 3 7 chr1 159211858 159212154 -83452199 + AluSg SINE Alu 1 297 -13 230 54 0 27 chr1 159212154 159212191 -83452162 + (TTAAA)n Simple_repeat Simple_repeat 2 37 0 501 277 181 0 chr1 159212262 159212417 -83451936 + MER5A DNA MER1_type 7 189 0 302 262 97 19 chr1 159214181 159214284 -83450069 - MER91C DNA MER1_type -29 111 1 234 321 0 37 chr1 159214480 159214561 -83449792 + MIR SINE MIR 103 180 -82 257 289 108 4 chr1 159214823 159214947 -83449406 + MIR SINE MIR 15 147 -62 532 177 0 0 chr1 159215159 159215238 -83449115 + FRAM/FAM SINE Alu 1 71 -105 2175 112 119 22 chr1 159215679 159216089 -83448264 - LTR7 LTR ERV1 0 450 1 1333 82 14 23 chr1 159216089 159216308 -83448045 - HERVH LTR ERV1 0 7713 7497 1751 192 65 45 chr1 159216308 159216756 -83447597 - LTR2B LTR ERV1 0 490 34 2259 91 12 6 chr1 159216777 159217119 -83447234 - HERVH LTR ERV1 -213 7500 7157 2127 169 9 7 chr1 159217112 159217538 -83446815 - HERVH LTR ERV1 -1697 6016 5590 * 3333 119 0 0 chr1 159217529 159218025 -83446328 - HERVH LTR ERV1 -2564 5149 4654 530 184 0 0 chr1 159218021 159218124 -83446229 - HERVH LTR ERV1 -4470 3243 3141 * 12960 128 9 32 chr1 159218122 159220924 -83443429 - HERVH LTR ERV1 -4730 2983 1 2170 115 119 22 chr1 159220924 159221334 -83443019 - LTR7 LTR ERV1 0 450 1 1323 233 18 21 chr1 159221471 159221781 -83442572 + AluJo SINE Alu 1 309 0 296 238 52 5 chr1 159222513 159222601 -83441752 - MIR SINE MIR -62 146 64 184 194 129 32 chr1 159222879 159222941 -83441412 + L3 LINE CR1 1191 1258 -319 * 187 356 110 8 chr1 159222933 159223051 -83441302 - L2 LINE L2 -1 3271 3142 322 253 32 21 chr1 159224419 159224514 -83439839 + MIR3 SINE MIR 112 207 -1 727 215 35 6 chr1 159224570 159224742 -83439611 + MIR SINE MIR 74 250 -12 1232 306 196 0 chr1 159224844 159225415 -83438938 + MER115 DNA AcHobo 2 684 -9 386 232 50 10 chr1 159225432 159225531 -83438822 + MIR SINE MIR 118 220 -42 227 282 80 55 chr1 159225611 159225815 -83438538 + L1M4 LINE L1 2691 2889 -3257 826 133 7 0 chr1 159225815 159225958 -83438395 + L1MA8 LINE L1 6144 6287 -4 227 282 80 55 chr1 159225958 159226243 -83438110 + L1M4 LINE L1 2889 3192 -2954 22 80 0 0 chr1 159226335 159226385 -83437968 + AT_rich Low_complexity Low_complexity 1 50 0 407 310 60 22 chr1 159226443 159226895 -83437458 + L1M4 LINE L1 3623 4091 -2055 234 196 36 0 chr1 159226906 159226962 -83437391 + LTR16B LTR ERVL 3 60 -404 2327 63 0 17 chr1 159227021 159227322 -83437031 - AluY SINE Alu -10 301 6 217 248 83 90 chr1 159227702 159227847 -83436506 - L3b LINE CR1 -150 1433 1290 21 0 0 0 chr1 159227933 159227954 -83436399 + AT_rich Low_complexity Low_complexity 1 21 0 222 303 66 13 chr1 159228815 159228891 -83435462 + MER91C DNA MER1_type 31 110 -30 201 297 27 14 chr1 159228987 159229061 -83435292 - MIR SINE MIR -109 153 79 255 218 30 173 chr1 159229187 159229320 -83435033 - L2 LINE L2 -1 3312 3199 982 223 52 13 chr1 159229366 159229595 -83434758 - MIR SINE MIR -22 240 3 34 72 0 0 chr1 159229847 159229916 -83434437 + AT_rich Low_complexity Low_complexity 1 69 0 239 372 64 27 chr1 159230327 159230515 -83433838 + MIR SINE MIR 48 242 -20 5537 142 13 17 chr1 159230597 159231968 -83432385 - L1PA15 LINE L1 -21 6144 4783 804 217 133 42 chr1 159232635 159232967 -83431386 - L1ME3A LINE L1 -5 6165 5804 533 246 257 16 chr1 159233246 159233433 -83430920 - MIR SINE MIR -3 259 28 2218 165 26 5 chr1 159233648 159234072 -83430281 - MER65C LTR ERV1 -24 437 5 353 161 32 0 chr1 159234187 159234249 -83430104 + Tigger2 DNA MER2_type 2 65 -2653 1872 120 160 118 chr1 159234249 159234775 -83429578 + Tigger2 DNA MER2_type 210 757 -1961 875 178 65 0 chr1 159234775 159234960 -83429393 + Tigger2 DNA MER2_type 2522 2718 0 3191 129 28 2 chr1 159235039 159235079 -83429274 - MER41B LTR ERV1 -85 550 513 2428 91 0 0 chr1 159235079 159235388 -83428965 + AluSg SINE Alu 1 309 -1 3191 129 28 2 chr1 159235388 159235883 -83428470 - MER41B LTR ERV1 -122 513 1 9129 144 60 78 chr1 159235883 159238744 -83425609 - HUERS-P3b LTR ERV1 0 6563 3258 2123 117 7 0 chr1 159238744 159239048 -83425305 - AluSx SINE Alu 0 306 1 9129 144 60 78 chr1 159239048 159239690 -83424663 - HUERS-P3b LTR ERV1 -3305 3258 2606 2151 112 61 10 chr1 159239686 159240182 -83424171 - HUERS-P3b LTR ERV1 -3929 2017 1392 * 4142 121 23 20 chr1 159240183 159240870 -83423483 - HUERS-P3b LTR ERV1 -5256 690 2 1006 73 26 0 chr1 159240871 159241022 -83423331 - MER41A LTR ERV1 0 554 400 232 349 0 9 chr1 159241129 159241235 -83423118 - L1ME LINE L1 -608 5558 5454 368 312 65 29 chr1 159241810 159241980 -83422373 - MIR SINE MIR -40 222 47 2251 104 0 0 chr1 159242574 159242863 -83421490 - AluSx SINE Alu -23 289 1 2133 132 7 0 chr1 159243034 159243344 -83421009 + AluSq SINE Alu 2 313 0 3215 250 199 24 chr1 159244065 159245356 -83418997 + L2 LINE L2 1239 2755 -559 712 234 14 59 chr1 159245373 159245595 -83418758 + L2 LINE L2 3098 3309 -4 258 298 213 0 chr1 159245670 159245811 -83418542 - MIR SINE MIR -26 236 66 2187 97 35 0 chr1 159246137 159246425 -83417928 - AluSp SINE Alu -14 299 2 2369 100 0 0 chr1 159246426 159246726 -83417627 - AluSx SINE Alu -12 300 1 21 57 0 0 chr1 159246991 159247026 -83417327 + AT_rich Low_complexity Low_complexity 1 35 0 2223 122 0 0 chr1 159247419 159247714 -83416639 + AluSx SINE Alu 1 295 -17 25 0 0 0 chr1 159248101 159248126 -83416227 + AT_rich Low_complexity Low_complexity 1 25 0 221 286 44 44 chr1 159248229 159248320 -83416033 + L2 LINE L2 2526 2616 -698 1862 165 13 3 chr1 159248606 159248909 -83415444 - AluJb SINE Alu -6 306 1 269 295 0 0 chr1 159250103 159250164 -83414189 + L2 LINE L2 3246 3306 -7 21 0 0 0 chr1 159250287 159250308 -83414045 + AT_rich Low_complexity Low_complexity 1 21 0 1815 172 0 14 chr1 159251825 159252122 -83412231 - AluJo SINE Alu -19 293 1 1927 131 14 17 chr1 159252676 159252967 -83411386 - AluJb SINE Alu -22 290 1 425 306 140 22 chr1 159253450 159253672 -83410681 + MIR SINE MIR 15 262 0 819 135 15 23 chr1 159253920 159254053 -83410300 - FLAM_C SINE Alu 0 133 2 456 279 27 0 chr1 159254625 159254736 -83409617 - MIR SINE MIR -66 196 83 273 128 37 156 chr1 159254740 159254849 -83409504 + FLAM_A SINE Alu 31 126 -7 24 0 0 0 chr1 159256111 159256135 -83408218 + AT_rich Low_complexity Low_complexity 1 24 0 243 341 49 0 chr1 159257202 159257284 -83407069 - L2 LINE L2 -19 3253 3168 482 236 199 37 chr1 159257693 159257934 -83406419 - L2 LINE L2 0 3313 3034 2033 123 0 17 chr1 159258008 159258300 -83406053 - AluSq SINE Alu -24 289 3 2301 108 0 13 chr1 159258538 159258853 -83405500 - AluSx SINE Alu -1 311 1 5346 108 31 10 chr1 159258853 159260563 -83403790 - L1PA16 LINE L1 -11 6155 4376 2448 84 0 0 chr1 159260563 159260873 -83403480 - AluY SINE Alu -1 310 1 5346 108 31 10 chr1 159260873 159260961 -83403392 - L1PA16 LINE L1 -1790 4376 4291 2269 198 4 6 chr1 159260962 159261442 -83402911 - L1PA16 LINE L1 -1944 4202 3724 2131 116 3 3 chr1 159261959 159262253 -83402100 + AluSc SINE Alu 1 294 -15 866 258 24 19 chr1 159263474 159263687 -83400666 + MIR SINE MIR 49 262 0 449 209 223 0 chr1 159264981 159265120 -83399233 + MER58C DNA MER1_type 46 215 0 12853 127 63 12 chr1 159265156 159267444 -83396909 - Tigger1 DNA MER2_type 0 2418 14 279 244 26 13 chr1 159268896 159268974 -83395379 - L2 LINE L2 -1046 2268 2190 678 287 101 31 chr1 159268980 159269266 -83395087 - L2 LINE L2 0 3313 3008 491 226 28 9 chr1 159269333 159269439 -83394914 - L2 LINE L2 -506 2808 2701 207 263 18 0 chr1 159269807 159269864 -83394489 - MIR SINE MIR -63 145 88 2215 99 7 0 chr1 159270579 159270863 -83393490 + AluSg SINE Alu 1 286 -24 237 33 0 0 chr1 159271044 159271074 -83393279 + (T)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr1 159271109 159271137 -83393216 + (T)n Simple_repeat Simple_repeat 1 28 0 23 54 0 0 chr1 159271348 159271385 -83392968 + AT_rich Low_complexity Low_complexity 1 37 0 790 200 69 0 chr1 159271415 159271560 -83392793 - FRAM SINE Alu -21 155 1 291 314 8 8 chr1 159272321 159272442 -83391911 + MARNA DNA Mariner 269 389 -197 22 70 0 0 chr1 159273335 159273378 -83390975 + AT_rich Low_complexity Low_complexity 1 43 0 207 229 42 0 chr1 159276190 159276238 -83388115 + L3 LINE CR1 1430 1479 -98 333 218 11 0 chr1 159276387 159276474 -83387879 + L1MB3 LINE L1 6083 6170 -13 284 247 140 0 chr1 159277259 159277352 -83387001 + L1MC/D LINE L1 5535 5640 -481 555 178 0 9 chr1 159277362 159277469 -83386884 + MER2 DNA MER2_type 59 164 -181 283 333 79 5 chr1 159277560 159277749 -83386604 + L1MC/D LINE L1 5678 5880 -1928 5260 117 170 22 chr1 159277803 159278875 -83385478 - Tigger3b DNA MER2_type 0 1231 2 580 234 305 4 chr1 159279407 159279646 -83384707 - MER5C DNA MER1_type 0 324 14 1956 149 3 3 chr1 159279824 159280120 -83384233 + 7SLRNA srpRNA srpRNA 8 303 -17 252 179 54 0 chr1 159280312 159280368 -83383985 + MLT1K LTR MaLR 513 571 -17 353 276 47 24 chr1 159280494 159280621 -83383732 + MIR SINE MIR 16 145 -63 248 331 162 0 chr1 159280841 159280995 -83383358 + L2 LINE L2 2553 2731 -583 552 265 154 60 chr1 159281310 159281725 -83382628 + MLT1H1 LTR MaLR 102 555 0 1087 249 56 15 chr1 159281895 159282236 -83382117 + MLT1C LTR MaLR 113 467 0 2454 68 0 0 chr1 159282978 159283274 -83381079 - AluSg SINE Alu -14 296 1 255 347 84 24 chr1 159283591 159283758 -83380595 - MER5B DNA MER1_type -1 177 1 2215 87 7 39 chr1 159284741 159285050 -83379303 + AluSx SINE Alu 1 299 -13 616 299 197 47 chr1 159285334 159286258 -83378095 + L2 LINE L2 1357 2419 -895 220 360 29 15 chr1 159286551 159286687 -83377666 + L2 LINE L2 2840 2977 -336 288 232 0 85 chr1 159286774 159286856 -83377497 + L2 LINE L2 3181 3255 -17 21 82 0 0 chr1 159288067 159288116 -83376237 + AT_rich Low_complexity Low_complexity 1 49 0 765 169 88 0 chr1 159289406 159289566 -83374787 - MER105 DNA DNA -3 201 28 561 240 85 49 chr1 159290650 159290896 -83373457 + MER112 DNA MER1_type 1 255 -1 1814 139 100 26 chr1 159291243 159291582 -83372771 + THE1B LTR MaLR 1 364 0 11923 80 14 1 chr1 159291582 159293141 -83371212 + THE1B-int LTR MaLR 1 1580 0 2161 134 57 17 chr1 159293141 159293491 -83370862 + THE1B LTR MaLR 1 364 0 235 324 54 27 chr1 159294310 159294421 -83369932 - L2 LINE L2 -9 3304 3191 1912 159 0 3 chr1 159294707 159294990 -83369363 + AluSx SINE Alu 1 282 -30 339 277 99 84 chr1 159295585 159295787 -83368566 - L2 LINE L2 -3 3269 3065 281 333 27 9 chr1 159295794 159295905 -83368448 + MIR3 SINE MIR 93 205 -3 2566 71 0 0 chr1 159296737 159297048 -83367305 + AluY SINE Alu 1 311 0 1793 130 18 11 chr1 159297244 159297521 -83366832 - AluJo SINE Alu -33 279 1 303 304 10 10 chr1 159297605 159297707 -83366646 + L1MC4a LINE L1 5880 5981 -1827 960 273 77 70 chr1 159299097 159300049 -83364304 + L1ME LINE L1 2 946 -5134 786 148 0 16 chr1 159300049 159300177 -83364176 + FLAM_C SINE Alu 1 126 -7 960 273 77 70 chr1 159300177 159300826 -83363527 + L1ME LINE L1 946 1649 -4431 2265 104 0 0 chr1 159300826 159301123 -83363230 - AluSx SINE Alu -13 299 3 960 273 77 70 chr1 159301123 159301331 -83363022 + L1ME LINE L1 1649 1854 -4226 27 29 0 0 chr1 159301340 159301374 -83362979 + AT_rich Low_complexity Low_complexity 1 34 0 1840 171 15 29 chr1 159301379 159301789 -83362564 - L1MA4 LINE L1 -27 6273 5870 1283 117 24 19 chr1 159301789 159301994 -83362359 - MER1B DNA MER1_type 0 339 134 3893 143 63 77 chr1 159301994 159302993 -83361360 + pTR5 LTR ERV1 745 2021 -417 271 276 10 0 chr1 159302996 159303094 -83361259 + LTR30 LTR ERV1 544 642 -80 1350 65 98 5 chr1 159303095 159303309 -83361044 + LTR12 LTR ERV1 480 713 -1 756 183 7 21 chr1 159303309 159303451 -83360902 - MER1B DNA MER1_type -157 140 1 2369 92 0 10 chr1 159303778 159304083 -83360270 - AluSg SINE Alu -8 302 1 2302 119 0 0 chr1 159304350 159304661 -83359692 - AluSq SINE Alu -2 311 1 191 296 0 0 chr1 159305171 159305215 -83359138 - L2 LINE L2 -21 3292 3249 312 376 21 7 chr1 159305727 159305868 -83358485 - L2 LINE L2 -940 2374 2232 2018 134 0 0 chr1 159306094 159306384 -83357969 + AluSg SINE Alu 1 290 -20 313 266 94 8 chr1 159309459 159309587 -83354766 + L1ME1 LINE L1 5264 5402 -2406 270 244 134 8 chr1 159309745 159309872 -83354481 + L1ME1 LINE L1 5977 6119 -47 * 349 196 143 0 chr1 159309784 159309917 -83354436 + L1MA10 LINE L1 6182 6333 -1 310 302 108 29 chr1 159309918 159310057 -83354296 + L1ME4a LINE L1 5944 6093 -28 255 305 71 14 chr1 159310219 159310360 -83353993 - Charlie8 DNA MER1_type -2237 180 32 749 207 0 29 chr1 159312310 159312484 -83351869 - FRAM SINE Alu -5 171 3 327 315 80 88 chr1 159313401 159313966 -83350387 + L1M2 LINE L1 472 1031 -5818 4428 155 46 41 chr1 159314544 159315422 -83348931 + Tigger7 DNA MER2_type 1 882 -1605 709 114 0 65 chr1 159315411 159315463 -83348890 + Tigger7 DNA MER2_type 1571 1625 -862 * 4537 124 43 11 chr1 159315463 159316132 -83348221 + LTR8 LTR ERV1 1 691 0 709 114 0 65 chr1 159316132 159316202 -83348151 + Tigger7 DNA MER2_type 1625 1685 -802 * 2948 163 55 3 chr1 159316199 159316972 -83347381 - MER54A LTR ERVL -27 874 1 264 208 125 0 chr1 159317064 159317136 -83347217 + MLT1J LTR MaLR 100 180 -331 188 287 109 10 chr1 159317637 159317738 -83346615 + L2 LINE L2 2930 3040 -273 766 216 127 4 chr1 159317807 159318043 -83346310 + LTR37B LTR ERV1 199 463 -5 490 306 121 26 chr1 159318044 159318309 -83346044 + L2 LINE L2 3024 3313 0 185 284 15 15 chr1 159319176 159319243 -83345110 + L2 LINE L2 1381 1447 -1867 337 277 170 64 chr1 159319910 159320051 -83344302 + MER5A DNA MER1_type 32 187 -2 694 309 46 51 chr1 159320052 159320402 -83343951 + L2 LINE L2 2804 3151 -162 600 225 46 12 chr1 159320411 159320584 -83343769 + MER104 DNA MER2_type 1 179 -1 784 224 78 35 chr1 159320791 159321046 -83343307 + LTR37B LTR ERV1 201 466 -2 505 265 37 7 chr1 159321048 159321184 -83343169 + L2 LINE L2 3174 3313 0 1302 204 39 29 chr1 159321314 159321593 -83342760 - AluJo SINE Alu -13 299 18 1725 174 213 45 chr1 159321651 159322135 -83342218 - MER34B LTR ERV1 0 565 1 1986 169 16 60 chr1 159323420 159323853 -83340500 + L1MB7 LINE L1 5755 6168 -16 2373 151 83 5 chr1 159323872 159324269 -83340084 - MSTA LTR MaLR 0 428 1 2107 135 132 23 chr1 159324514 159324900 -83339453 + MSTA LTR MaLR 1 428 0 1664 156 61 40 chr1 159325011 159325253 -83339100 + L1MA9 LINE L1 5957 6210 -102 1696 165 0 67 chr1 159325253 159325581 -83338772 - AluJb SINE Alu -6 306 1 1664 156 61 40 chr1 159325581 159325684 -83338669 + L1MA9 LINE L1 6210 6309 -3 6092 45 1 0 chr1 159325731 159326425 -83337928 + L1PA5 LINE L1 5459 6153 -1 186 103 0 0 chr1 159326469 159326498 -83337855 + (A)n Simple_repeat Simple_repeat 1 29 0 557 235 26 2 chr1 159326717 159326847 -83337506 - MLT1H LTR MaLR -361 188 12 486 215 11 0 chr1 159327308 159327401 -83336952 + MLT2E LTR ERVL 535 628 0 1260 114 0 6 chr1 159328701 159328877 -83335476 + AluSg/x SINE Alu 136 310 -2 287 184 0 20 chr1 159329538 159329587 -83334766 + MER5B DNA MER1_type 2 49 -129 26 0 0 0 chr1 159329591 159329617 -83334736 + AT_rich Low_complexity Low_complexity 1 26 0 424 218 110 44 chr1 159329839 159330005 -83334348 - MER5B DNA MER1_type -17 161 4 744 203 90 28 chr1 159330008 159330077 -83334276 + MER5A DNA MER1_type 1 64 -125 2323 66 0 10 chr1 159330077 159330365 -83333988 + AluSq SINE Alu 12 296 -17 744 203 90 28 chr1 159330365 159330472 -83333881 + MER5A DNA MER1_type 64 188 -1 893 200 35 5 chr1 159330826 159331026 -83333327 - L1MCa LINE L1 -4582 1728 1523 241 136 91 0 chr1 159331027 159331071 -83333282 - MLT2B2 LTR ERVL 0 515 468 400 213 13 0 chr1 159331100 159331175 -83333178 - Tigger5 DNA MER2_type -2246 77 2 2487 151 30 84 chr1 159331186 159331530 -83332823 - MLT2B2 LTR ERVL -45 470 109 2174 108 0 10 chr1 159331530 159331827 -83332526 - AluSc SINE Alu -13 296 3 1741 168 10 7 chr1 159331829 159332127 -83332226 - AluJo SINE Alu -13 299 1 2487 151 30 84 chr1 159332127 159332276 -83332077 - MLT2B2 LTR ERVL -407 108 1 266 221 68 118 chr1 159332276 159332445 -83331908 - L1MCa LINE L1 -4644 1485 1182 2416 67 7 0 chr1 159332445 159332745 -83331608 - AluY SINE Alu -9 302 1 266 221 68 118 chr1 159332745 159332782 -83331571 - L1MCa LINE L1 -4947 1182 1145 1899 116 94 11 chr1 159332824 159333100 -83331253 - AluSq SINE Alu -14 299 1 1157 158 46 85 chr1 159333165 159333494 -83330859 + MLT1C LTR MaLR 3 318 -149 672 206 50 70 chr1 159333578 159333777 -83330576 + MLT1C LTR MaLR 273 467 0 559 252 16 0 chr1 159334158 159334285 -83330068 + MLT1H LTR MaLR 413 541 -8 269 293 158 26 chr1 159334360 159334701 -83329652 - HAL1 LINE L1 -891 1616 1231 791 241 88 52 chr1 159335591 159336086 -83328267 - L1MCa LINE L1 -5147 972 410 1388 144 0 132 chr1 159436162 159436488 -83227865 - AluSx SINE Alu -25 287 5 415 284 46 50 chr1 159436759 159437041 -83227312 - L1M4 LINE L1 -1299 4847 4567 298 286 19 19 chr1 159437276 159437381 -83226972 + MER103 DNA DNA 7 111 -55 746 156 156 13 chr1 159438532 159438686 -83225667 - AluJb SINE Alu -16 296 121 2260 269 70 3 chr1 159438688 159439335 -83225018 - L1MEc LINE L1 -5595 801 112 1783 219 50 18 chr1 159439385 159439829 -83224524 - MLT1C LTR MaLR -2 465 8 516 320 86 17 chr1 159439917 159440151 -83224202 + MIR SINE MIR 2 251 -11 27 29 0 0 chr1 159440169 159440203 -83224150 + AT_rich Low_complexity Low_complexity 1 34 0 223 232 14 43 chr1 159440796 159440865 -83223488 + L2 LINE L2 3187 3253 -60 28 0 0 0 chr1 159442304 159442332 -83222021 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 159443218 159443239 -83221114 + AT_rich Low_complexity Low_complexity 1 21 0 4051 61 33 0 chr1 159443387 159443930 -83220423 - L1PA7 LINE L1 -3 6151 5591 431 129 0 0 chr1 159444036 159444106 -83220247 + L1M4c LINE L1 1923 1992 -4392 * 518 32 0 0 chr1 159444103 159444166 -83220187 + L1P LINE L1 1647 1709 -4437 227 289 0 0 chr1 159444183 159444266 -83220087 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 2348 169 21 31 chr1 159444268 159444451 -83219902 + L1M4c LINE L1 1974 2157 -4227 2485 67 0 10 chr1 159444451 159444764 -83219589 - AluY SINE Alu -1 310 1 2348 169 21 31 chr1 159444764 159445065 -83219288 + L1M4c LINE L1 2157 2453 -3931 41583 55 5 2 chr1 159445065 159451195 -83213158 + L1PA3 LINE L1 3 6155 0 704 291 21 42 chr1 159451197 159451534 -83212819 + HAL1b LINE L1 311 640 -708 586 256 48 60 chr1 159451564 159451896 -83212457 + L1MC5 LINE L1 7204 7531 -430 559 224 67 48 chr1 159451976 159452186 -83212167 + L1ME3A LINE L1 5956 6169 -1 26 0 0 0 chr1 159452187 159452213 -83212140 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 159453314 159453335 -83211018 + AT_rich Low_complexity Low_complexity 1 21 0 724 140 7 7 chr1 159453577 159453713 -83210640 + GA-rich Low_complexity Low_complexity 1 136 0 208 402 56 24 chr1 159455482 159455733 -83208620 + L2 LINE L2 2707 2965 -349 293 290 97 40 chr1 159456501 159456625 -83207728 - MIR SINE MIR -64 198 68 642 266 79 33 chr1 159456720 159456961 -83207392 - MIR SINE MIR -6 256 5 270 293 97 50 chr1 159457155 159457373 -83206980 - L1MEd LINE L1 -4900 1219 986 2153 129 0 0 chr1 159457373 159457676 -83206677 - AluSx SINE Alu -9 303 1 270 293 97 50 chr1 159457676 159457716 -83206637 - L1MEd LINE L1 -5133 986 949 22 35 0 0 chr1 159457792 159457821 -83206532 + AT_rich Low_complexity Low_complexity 1 29 0 2174 209 124 32 chr1 159457821 159458452 -83205901 - L1ME1 LINE L1 -18 6131 5443 1868 209 24 60 chr1 159458515 159459012 -83205341 + MLT1D LTR MaLR 27 505 0 692 239 55 1 chr1 159459025 159459306 -83205047 - L1ME1 LINE L1 -724 5425 5130 * 743 198 99 0 chr1 159459305 159459497 -83204856 + L1MDa LINE L1 2100 2310 -4230 487 248 22 4 chr1 159459495 159459716 -83204637 + L1MD2 LINE L1 6047 6322 -37 * 1728 241 55 17 chr1 159459740 159460374 -83203979 - L1ME1 LINE L1 -1286 4843 4147 1761 163 9 20 chr1 159460439 159460788 -83203565 + L1 LINE L1 4496 4840 -1306 1883 261 60 24 chr1 159460794 159460928 -83203425 - L1ME1 LINE L1 -2144 3985 3857 2380 161 34 0 chr1 159460928 159461343 -83203010 - MSTB1 LTR MaLR 0 432 4 1883 261 60 24 chr1 159461343 159461929 -83202424 - L1ME1 LINE L1 -2272 3857 3239 2769 249 45 19 chr1 159461976 159462804 -83201549 + L1ME1 LINE L1 5310 6158 -8 485 273 105 19 chr1 159462841 159463108 -83201245 - L1ME3A LINE L1 -287 5883 5594 1511 58 16 188 chr1 159463123 159463432 -83200921 - LTR12 LTR ERV1 -451 263 8 262 296 192 20 chr1 159463432 159463688 -83200665 - L1MC4 LINE L1 -492 7316 7019 394 226 48 83 chr1 159463862 159464030 -83200323 - L1MC4a LINE L1 -884 6924 6763 315 214 22 22 chr1 159464049 159464138 -83200215 - L1ME1 LINE L1 -5910 209 121 188 216 245 78 chr1 159464175 159464277 -83200076 - L2 LINE L2 -3 3310 3192 296 394 80 8 chr1 159464449 159464713 -83199640 - L2 LINE L2 -668 2646 2364 208 289 84 60 chr1 159464729 159464812 -83199541 + L2 LINE L2 3170 3254 -18 260 338 0 0 chr1 159464948 159465019 -83199334 + L2 LINE L2 3201 3271 -1 234 0 0 0 chr1 159465221 159465247 -83199106 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 199 232 36 18 chr1 159466735 159466791 -83197562 + MIR SINE MIR 89 145 -63 489 348 71 64 chr1 159467814 159468110 -83196243 + L2 LINE L2 2940 3237 -35 218 387 28 0 chr1 159468129 159468235 -83196118 - L2 LINE L2 -472 2842 2734 301 376 60 23 chr1 159468251 159468384 -83195969 - L2 LINE L2 -1 3271 3134 2842 197 60 24 chr1 159468430 159468534 -83195819 - L1MB5 LINE L1 -266 6406 6307 2533 143 44 2 chr1 159468534 159468969 -83195384 + MSTB2 LTR MaLR 1 453 -4 2842 197 60 24 chr1 159468969 159471584 -83192769 - L1MB5 LINE L1 -365 6307 3526 2103 253 50 59 chr1 159471599 159473071 -83191282 - L1MB5 LINE L1 -4952 1694 2 386 304 43 43 chr1 159473070 159473350 -83191003 - L1MEd LINE L1 -4930 1189 910 * 399 280 128 41 chr1 159474051 159474465 -83189888 + L1MEc LINE L1 1811 2260 -4136 817 227 14 34 chr1 159474480 159474687 -83189666 + MER3 DNA MER1_type 7 209 0 2545 64 0 3 chr1 159474725 159475037 -83189316 - AluY SINE Alu 0 311 1 426 316 82 5 chr1 159475063 159475259 -83189094 + L1MEc LINE L1 2271 2481 -3734 660 301 127 37 chr1 159475269 159475715 -83188638 + L1MEc LINE L1 3595 3999 -2216 1960 140 3 3 chr1 159475715 159476007 -83188346 + AluJb SINE Alu 1 292 -20 660 301 127 37 chr1 159476007 159476392 -83187961 + L1MEc LINE L1 3999 4501 -1714 1655 176 116 126 chr1 159476715 159477437 -83186916 - LTR8A LTR ERV1 -12 715 1 384 282 54 27 chr1 159477545 159477694 -83186659 - MER112 DNA MER1_type -105 155 3 354 210 126 77 chr1 159477811 159477954 -83186399 - L2 LINE L2 -1394 1920 1771 183 80 0 0 chr1 159478128 159478153 -83186200 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr1 159478171 159478194 -83186159 + AT_rich Low_complexity Low_complexity 1 23 0 19606 47 7 4 chr1 159478197 159481468 -83182885 - L1PA5 LINE L1 -6 6148 2872 1375 190 88 7 chr1 159484247 159484521 -83179832 - AluJo SINE Alu -16 296 1 300 172 0 0 chr1 159484718 159484776 -83179577 + (TA)n Simple_repeat Simple_repeat 1 58 0 28938 121 18 18 chr1 159485385 159486807 -83177546 - L1PA8 LINE L1 -5 6482 5062 192 40 0 0 chr1 159486807 159486832 -83177521 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 28938 121 18 18 chr1 159486832 159491241 -83173112 - L1PA8 LINE L1 -1425 5062 611 4393 168 31 7 chr1 159491344 159492117 -83172236 - L1PA8 LINE L1 -5660 801 10 685 153 17 0 chr1 159492128 159492246 -83172107 + L1MC/D LINE L1 5633 5752 -592 25 0 0 0 chr1 159492304 159492329 -83172024 + AT_rich Low_complexity Low_complexity 1 25 0 513 286 65 18 chr1 159492399 159492567 -83171786 - LTR67 LTR ERVL -10 547 372 2303 95 0 7 chr1 159493018 159493324 -83171029 - AluSg SINE Alu -6 304 1 26 30 0 0 chr1 159493700 159493733 -83170620 + AT_rich Low_complexity Low_complexity 1 33 0 203 189 0 0 chr1 159494413 159494450 -83169903 + T-rich Low_complexity Low_complexity 1 37 0 2708 148 9 18 chr1 159494450 159494895 -83169458 - LTR26B LTR ERV1 -61 470 30 8070 157 48 63 chr1 159494897 159497513 -83166840 - HUERS-P1 LTR ERV1 -589 5742 3553 3026 147 4 6 chr1 159497504 159497981 -83166372 + MER4B-int LTR ERV1 3091 3566 -3192 * 2035 190 81 43 chr1 159497978 159498595 -83165758 - HUERS-P1 LTR ERV1 -5702 1835 13 * 393 333 33 61 chr1 159498913 159499126 -83165227 - HUERS-P1 LTR ERV1 -6039 224 18 1117 107 0 7 chr1 159499151 159499300 -83165053 - AluJo SINE Alu -164 148 1 181 213 106 0 chr1 159499460 159499507 -83164846 + L2 LINE L2 3261 3312 -1 2214 98 7 0 chr1 159499537 159499834 -83164519 + AluSc SINE Alu 1 299 -10 1762 113 0 0 chr1 159501618 159501857 -83162496 - AluSg SINE Alu -71 239 1 849 314 85 28 chr1 159504112 159504570 -83159783 - L3 LINE CR1 -1 1576 1093 530 243 65 9 chr1 159505078 159505247 -83159106 - MER104 DNA Tc2 -2 178 1 2344 227 97 18 chr1 159507032 159508313 -83156040 - L1ME1 LINE L1 -5 6161 4705 1082 229 50 3 chr1 159508309 159508390 -83155963 - L1ME1 LINE L1 -2982 3164 3088 * 261 0 0 0 chr1 159508390 159508419 -83155934 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1082 229 50 3 chr1 159508419 159508639 -83155714 - L1ME1 LINE L1 -3058 3088 2849 945 238 55 25 chr1 159508637 159509040 -83155313 - L1ME1 LINE L1 -3526 2620 2206 * 478 257 133 5 chr1 159510099 159510317 -83154036 - L1ME4a LINE L1 -257 5864 5619 21 57 0 0 chr1 159510546 159510581 -83153772 + AT_rich Low_complexity Low_complexity 1 35 0 203 306 118 0 chr1 159510975 159511060 -83153293 - MIR3 SINE MIR -6 202 108 268 261 42 92 chr1 159511169 159511288 -83153065 - MIR3 SINE MIR -6 202 90 2200 121 3 0 chr1 159511559 159511866 -83152487 + AluSx SINE Alu 1 308 -4 2189 134 0 0 chr1 159512068 159512373 -83151980 + AluSx SINE Alu 1 305 -7 5617 216 103 33 chr1 159512653 159513117 -83151236 - L1ME4a LINE L1 -844 5302 4872 1756 80 30 4 chr1 159513117 159513354 -83150999 + AluY SINE Alu 58 300 -11 5617 216 103 33 chr1 159513354 159514881 -83149472 - L1ME4a LINE L1 -1274 4872 3181 21 57 0 0 chr1 159515227 159515262 -83149091 + AT_rich Low_complexity Low_complexity 1 35 0 1606 182 20 35 chr1 159515467 159515813 -83148540 - MER58B DNA MER1_type 0 341 1 314 272 25 0 chr1 159516010 159516091 -83148262 + MER68 LTR ERV1 29 111 -451 513 151 21 32 chr1 159517518 159517611 -83146742 - AluJb SINE Alu -183 129 38 639 286 111 0 chr1 159518513 159518730 -83145623 + MIR SINE MIR 22 262 0 22 0 0 0 chr1 159518846 159518868 -83145485 + AT_rich Low_complexity Low_complexity 1 22 0 413 238 17 23 chr1 159519641 159519776 -83144577 - MLT1I LTR MaLR -202 207 80 455 305 109 0 chr1 159519936 159520035 -83144318 + MIR SINE MIR 8 95 -167 269 89 22 0 chr1 159520035 159520080 -83144273 + (TA)n Simple_repeat Simple_repeat 2 47 0 455 305 109 0 chr1 159520080 159520154 -83144199 + MIR SINE MIR 95 200 -62 1265 175 26 4 chr1 159520298 159520526 -83143827 - MLT1A1 LTR MaLR 0 365 133 1819 146 106 3 chr1 159520527 159520849 -83143504 + THE1B LTR MaLR 4 358 -6 783 196 0 0 chr1 159520855 159520993 -83143360 - MLT1A1 LTR MaLR -227 138 1 330 193 0 0 chr1 159521090 159521147 -83143206 + MIR SINE MIR 2 58 -204 185 128 0 26 chr1 159521977 159522016 -83142337 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 25 83 0 0 chr1 159522035 159522095 -83142258 + AT_rich Low_complexity Low_complexity 1 60 0 7404 68 2 1 chr1 159522297 159523384 -83140969 - L1P3 LINE L1 -682 5472 4384 189 309 36 12 chr1 159523391 159523475 -83140878 + L2 LINE L2 1709 1794 -1520 1689 259 119 52 chr1 159523478 159524340 -83140013 + L2 LINE L2 1618 2537 -777 353 260 0 0 chr1 159524551 159524624 -83139729 + L2 LINE L2 3234 3306 -7 420 279 18 67 chr1 159524687 159524852 -83139501 + MIR SINE MIR 48 204 -58 12022 22 3 0 chr1 159525029 159527202 -83137151 - L1PA4 LINE L1 -3 6152 3974 2116 50 3 14 chr1 159527202 159527485 -83136868 + L1P LINE L1 491 770 -5376 995 184 170 21 chr1 159527595 159527877 -83136476 + MER5C DNA MER1_type 1 324 0 383 0 21 0 chr1 159532450 159532497 -83131856 + (TG)n Simple_repeat Simple_repeat 2 49 0 1966 154 13 0 chr1 159533003 159533308 -83131045 - AluSx SINE Alu -3 309 1 956 258 19 19 chr1 159533552 159533808 -83130545 - MIR SINE MIR 0 262 7 320 297 115 36 chr1 159534246 159534411 -83129942 + MIR SINE MIR 15 192 -70 21 0 0 0 chr1 159534814 159534835 -83129518 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 159535036 159535059 -83129294 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr1 159536124 159536161 -83128192 + AT_rich Low_complexity Low_complexity 1 37 0 30 59 0 0 chr1 159536169 159536220 -83128133 + AT_rich Low_complexity Low_complexity 1 51 0 496 282 120 14 chr1 159536611 159536827 -83127526 + MIR SINE MIR 24 262 0 429 233 126 0 chr1 159536830 159536933 -83127420 - L2 LINE L2 -7 3306 3191 1462 121 19 0 chr1 159536993 159537208 -83127145 - AluSg/x SINE Alu -9 303 85 331 267 0 0 chr1 159537209 159537295 -83127058 - AluSg/x SINE Alu -53 249 164 22 0 0 0 chr1 159537392 159537414 -83126939 + AT_rich Low_complexity Low_complexity 1 22 0 2207 96 3 16 chr1 159537487 159537790 -83126563 + AluSg SINE Alu 1 299 -11 23 0 0 0 chr1 159538589 159538612 -83125741 + AT_rich Low_complexity Low_complexity 1 23 0 837 262 194 32 chr1 159538846 159539525 -83124828 - L1ME4a LINE L1 -15 6106 5318 1631 168 3 28 chr1 159539539 159539830 -83124523 - AluJo SINE Alu -18 294 11 24 85 0 0 chr1 159539863 159539922 -83124431 + AT_rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr1 159540329 159540361 -83123992 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr1 159541652 159541682 -83122671 + AT_rich Low_complexity Low_complexity 1 30 0 218 196 0 0 chr1 159544242 159544293 -83120060 + T-rich Low_complexity Low_complexity 5 55 0 375 215 57 62 chr1 159544494 159544671 -83119682 - L1ME4a LINE L1 -1673 4473 4298 24 0 0 0 chr1 159544737 159544761 -83119592 + AT_rich Low_complexity Low_complexity 1 24 0 1393 350 74 18 chr1 159545133 159545915 -83118438 + L2 LINE L2 2152 2977 -337 395 304 62 19 chr1 159546920 159547177 -83117176 - L1ME4a LINE L1 -273 5848 5581 883 207 66 51 chr1 159547178 159547434 -83116919 + L1ME2 LINE L1 5888 6147 -17 39 22 0 0 chr1 159547980 159548026 -83116327 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr1 159548973 159548996 -83115357 + AT_rich Low_complexity Low_complexity 1 23 0 3123 169 20 4 chr1 159549205 159549745 -83114608 - MER44D DNA MER2_type -1 604 1 2433 70 3 10 chr1 159549765 159550077 -83114276 - AluSp SINE Alu -3 310 1 513 199 244 0 chr1 159550235 159550391 -83113962 + MER3 DNA MER1_type 16 209 0 2148 248 94 42 chr1 159550655 159551475 -83112878 - L1ME3A LINE L1 -41 6129 5267 290 330 91 19 chr1 159553064 159553273 -83111080 + L2 LINE L2 2090 2313 -1001 382 293 68 94 chr1 159553283 159553549 -83110804 + MIR SINE MIR 4 262 0 280 328 160 8 chr1 159553709 159553828 -83110525 - L2 LINE L2 0 3272 3136 1710 168 0 27 chr1 159553872 159554170 -83110183 + AluJb SINE Alu 1 290 -22 405 269 44 25 chr1 159554468 159554628 -83109725 + MER103 DNA DNA 2 164 -2 218 232 134 12 chr1 159554705 159554787 -83109566 + MIR SINE MIR 161 252 -10 1083 160 0 17 chr1 159555117 159555292 -83109061 + FRAM SINE Alu 1 171 -5 21 82 0 0 chr1 159555580 159555629 -83108724 + AT_rich Low_complexity Low_complexity 1 49 0 1302 161 0 0 chr1 159555824 159556029 -83108324 - MER2 DNA MER2_type -139 206 2 504 258 105 0 chr1 159556141 159556265 -83108088 - L2 LINE L2 0 3272 3136 329 164 0 0 chr1 159556376 159556431 -83107922 + L1PB4 LINE L1 6089 6143 -13 304 284 123 7 chr1 159557110 159557265 -83107088 - L1MDa LINE L1 -4592 1948 1776 537 312 107 51 chr1 159557267 159557731 -83106622 - HAL1b LINE L1 -918 430 1 25 65 0 0 chr1 159557771 159557817 -83106536 + AT_rich Low_complexity Low_complexity 1 46 0 30 77 0 0 chr1 159559824 159559889 -83104464 + AT_rich Low_complexity Low_complexity 1 65 0 212 345 92 48 chr1 159559907 159560113 -83104240 + L2 LINE L2 1686 1900 -1414 322 279 72 27 chr1 159560939 159561050 -83103303 - L2 LINE L2 -7 3306 3191 23 54 0 0 chr1 159562111 159562148 -83102205 + AT_rich Low_complexity Low_complexity 1 37 0 615 272 86 12 chr1 159563225 159563387 -83100966 - MIR3 SINE MIR -14 194 21 235 94 57 123 chr1 159564219 159564325 -83100028 + L1ME4a LINE L1 6018 6116 -5 180 0 0 0 chr1 159564412 159564432 -83099921 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 159565377 159565398 -83098955 + AT_rich Low_complexity Low_complexity 1 21 0 414 300 25 8 chr1 159566385 159566505 -83097848 - L3 LINE CR1 -7 1570 1449 348 283 10 0 chr1 159566550 159566649 -83097704 + MIR SINE MIR 77 176 -86 22 0 0 0 chr1 159567023 159567045 -83097308 + AT_rich Low_complexity Low_complexity 1 22 0 2024 136 10 3 chr1 159567103 159567413 -83096940 + AluSq SINE Alu 1 312 -1 3804 89 11 4 chr1 159567417 159567946 -83096407 + L1PA15 LINE L1 5630 6162 -3 2612 121 33 26 chr1 159568897 159569327 -83095026 - Tigger2a DNA MER2_type 0 434 2 183 362 110 8 chr1 159571796 159571923 -83092430 - L3 LINE CR1 -1313 264 125 814 183 0 0 chr1 159572505 159572647 -83091706 + FLAM_C SINE Alu 1 142 -1 1892 161 3 22 chr1 159572651 159572967 -83091386 + 7SLRNA srpRNA srpRNA 2 311 -9 2214 110 3 10 chr1 159572970 159573280 -83091073 + AluSx SINE Alu 1 308 -4 1652 148 72 14 chr1 159573999 159574289 -83090064 + AluJo SINE Alu 1 307 -5 215 341 116 45 chr1 159575415 159575682 -83088671 + L2 LINE L2 3026 3311 -2 259 257 193 46 chr1 159576483 159576592 -83087761 + L2 LINE L2 3137 3261 -11 2402 52 3 0 chr1 159577083 159577373 -83086980 + AluY SINE Alu 1 291 -20 23 33 0 0 chr1 159577870 159577900 -83086453 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 159578025 159578054 -83086299 + AT_rich Low_complexity Low_complexity 1 29 0 322 338 56 48 chr1 159578059 159578290 -83086063 - MIR SINE MIR -28 234 2 315 259 0 25 chr1 159578319 159578400 -83085953 + MER112 DNA MER1_type 2 80 -180 278 233 0 14 chr1 159578405 159578478 -83085875 + (TA)n Simple_repeat Simple_repeat 1 72 0 340 278 78 0 chr1 159578504 159578619 -83085734 + MER112 DNA MER1_type 124 247 -13 22 35 0 0 chr1 159580124 159580153 -83084200 + AT_rich Low_complexity Low_complexity 1 29 0 256 260 98 32 chr1 159580178 159580301 -83084052 + L3b LINE CR1 1249 1379 -204 440 284 56 0 chr1 159582671 159582833 -83081520 + L1ME LINE L1 5513 5683 -438 25 31 0 0 chr1 159583089 159583121 -83081232 + AT_rich Low_complexity Low_complexity 1 32 0 287 281 37 59 chr1 159584200 159584335 -83080018 - MIR SINE MIR -60 202 71 6260 176 161 28 chr1 159585351 159586899 -83077454 + MER52A LTR ERV1 1 1755 0 24 96 0 0 chr1 159589222 159589295 -83075058 + AT_rich Low_complexity Low_complexity 1 73 0 387 0 0 0 chr1 159589942 159589985 -83074368 + (CA)n Simple_repeat Simple_repeat 2 44 0 1836 175 27 12 chr1 159590151 159590483 -83073870 + MER1B DNA MER1_type 1 337 0 356 272 107 59 chr1 159590528 159590697 -83073656 - MIR SINE MIR 0 262 86 * 2140 315 153 38 chr1 159590645 159592309 -83072044 + L2 LINE L2 1394 3264 -8 23 33 0 0 chr1 159592390 159592420 -83071933 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr1 159593918 159593944 -83070409 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr1 159595864 159595892 -83068461 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr1 159598168 159598206 -83066147 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 159599541 159599562 -83064791 + AT_rich Low_complexity Low_complexity 1 21 0 2188 130 0 0 chr1 159599677 159599985 -83064368 + AluSq SINE Alu 1 308 -5 279 250 64 43 chr1 159600007 159600147 -83064206 + L1MEd LINE L1 12 154 -5965 392 356 40 24 chr1 159600193 159600443 -83063910 + L1MEd LINE L1 308 561 -5558 22 56 0 0 chr1 159600681 159600717 -83063636 + AT_rich Low_complexity Low_complexity 1 36 0 1616 160 54 17 chr1 159602175 159602469 -83061884 - AluJb SINE Alu -7 305 1 2235 110 0 0 chr1 159602501 159602800 -83061553 + AluSg SINE Alu 3 301 -9 444 273 139 18 chr1 159603234 159603399 -83060954 - L2 LINE L2 0 3313 3129 207 0 0 0 chr1 159604191 159604214 -83060139 + (TG)n Simple_repeat Simple_repeat 2 24 0 837 258 231 45 chr1 159604327 159604812 -83059541 + L3 LINE CR1 920 1494 -83 234 292 92 8 chr1 159605030 159605160 -83059193 - MIR SINE MIR -12 250 110 226 234 0 0 chr1 159607884 159607931 -83056422 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr1 159608352 159608373 -83055980 + AT_rich Low_complexity Low_complexity 1 21 0 384 274 53 9 chr1 159610584 159610697 -83053656 - MIR3 SINE MIR -9 199 82 630 165 0 0 chr1 159611077 159611174 -83053179 - AluJb SINE Alu -22 290 194 21028 46 50 3 chr1 159611274 159613980 -83050373 - L1P LINE L1 -3315 2831 1 485 281 62 33 chr1 159613981 159614255 -83050098 - HAL1b LINE L1 -1028 320 39 363 269 11 21 chr1 159615212 159615305 -83049048 - MIR SINE MIR -64 144 53 279 277 12 12 chr1 159615348 159615431 -83048922 + CT-rich Low_complexity Low_complexity 1 83 0 23 0 0 0 chr1 159616955 159616978 -83047375 + AT_rich Low_complexity Low_complexity 1 23 0 246 62 0 0 chr1 159617515 159617547 -83046806 + (TATG)n Simple_repeat Simple_repeat 1 32 0 641 76 49 14 chr1 159617547 159617691 -83046662 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 2433 228 16 25 chr1 159617811 159618376 -83045977 + MER74B LTR ERVL 56 615 -7 1263 198 52 79 chr1 159619092 159619461 -83044892 - MLT1A2 LTR MaLR -4 370 12 2208 91 22 6 chr1 159620019 159620339 -83044014 + L1MA1 LINE L1 5978 6302 0 381 325 105 0 chr1 159620624 159620738 -83043615 - L2 LINE L2 0 3272 3147 21099 87 18 6 chr1 159621698 159625728 -83038625 - L1PA7 LINE L1 -2 6152 2075 230 366 129 5 chr1 159626052 159626238 -83038115 + L2 LINE L2 2869 3077 -195 41774 40 3 2 chr1 159626257 159631123 -83033230 - L1PA3 LINE L1 0 6155 1276 1475 18 0 0 chr1 159631123 159631294 -83033059 - L1PA2 LINE L1 -2 6153 5983 41774 40 3 2 chr1 159631294 159632564 -83031789 - L1PA3 LINE L1 -4879 1276 9 218 364 136 7 chr1 159632607 159632747 -83031606 + L2 LINE L2 3105 3262 -10 207 290 143 41 chr1 159635427 159635686 -83028667 + L2 LINE L2 2750 3031 -241 254 271 47 65 chr1 159635749 159635856 -83028497 - L2 LINE L2 0 3313 3209 2908 82 17 2 chr1 159635906 159636310 -83028043 + L1PA12 LINE L1 5756 6165 -3 786 203 105 62 chr1 159636549 159636898 -83027455 + Charlie2 DNA MER1_type 1882 2253 -609 6626 175 29 26 chr1 159636898 159639043 -83025310 + L1PA13 LINE L1 3979 6149 -14 786 203 105 62 chr1 159639043 159639111 -83025242 + Charlie2 DNA MER1_type 2253 2317 -545 1524 301 42 53 chr1 159639113 159639330 -83025023 + L2 LINE L2 2107 2325 -989 2501 111 7 42 chr1 159639330 159639358 -83024995 - L1MA2 LINE L1 0 6304 6277 207 0 0 0 chr1 159639358 159639381 -83024972 + (CA)n Simple_repeat Simple_repeat 2 24 0 2501 111 7 42 chr1 159639381 159639804 -83024549 - L1MA2 LINE L1 -27 6277 5869 1524 301 42 53 chr1 159639804 159640233 -83024120 + L2 LINE L2 2325 2746 -568 1785 196 46 10 chr1 159640241 159640600 -83023753 + MLT2D LTR ERVL 1 377 -37 300 27 0 0 chr1 159640600 159640637 -83023716 + (CA)n Simple_repeat Simple_repeat 2 38 0 1785 196 46 10 chr1 159640637 159640670 -83023683 + MLT2D LTR ERVL 377 407 -7 410 231 116 0 chr1 159640774 159641077 -83023276 - L1M4 LINE L1 -2686 3460 3123 472 248 23 15 chr1 159641160 159641293 -83023060 - MER46C DNA MER2_type -6 332 199 237 351 126 14 chr1 159641418 159641711 -83022642 - L2 LINE L2 -1003 2311 1986 666 176 14 131 chr1 159641924 159642145 -83022208 + MIR SINE MIR 68 262 0 1059 94 50 28 chr1 159642548 159642728 -83021625 + L1MB3 LINE L1 5999 6182 -1 34 24 0 0 chr1 159643286 159643327 -83021026 + AT_rich Low_complexity Low_complexity 1 41 0 1199 165 5 15 chr1 159645414 159645641 -83018712 - AluJo SINE Alu 0 309 85 1967 127 0 43 chr1 159645753 159646052 -83018301 + AluSq SINE Alu 7 292 -21 1243 159 120 67 chr1 159646179 159646538 -83017815 - LTR8A LTR ERV1 -30 697 320 209 318 137 66 chr1 159646723 159646839 -83017514 - L2 LINE L2 -223 3049 2943 2023 136 16 48 chr1 159646839 159647215 -83017138 - THE1B LTR MaLR 0 364 1 209 318 137 66 chr1 159647215 159647309 -83017044 - L2 LINE L2 -329 2943 2824 532 227 102 6 chr1 159647493 159647669 -83016684 + L1ME3A LINE L1 5759 5951 -219 255 226 0 0 chr1 159647908 159647970 -83016383 + HsTC2 DNA Tc2 1 62 -1836 21 36 0 0 chr1 159647995 159648023 -83016330 + AT_rich Low_complexity Low_complexity 1 28 0 688 133 38 0 chr1 159648023 159648128 -83016225 - FRAM SINE Alu -21 155 47 1210 271 64 8 chr1 159648174 159648658 -83015695 + L1PBa LINE L1 1 511 -6352 731 199 68 11 chr1 159648850 159649041 -83015312 + ERVL LTR ERVL 5299 5500 -264 40 37 0 0 chr1 159649159 159649213 -83015140 + AT_rich Low_complexity Low_complexity 1 54 0 1562 200 17 37 chr1 159649347 159649365 -83014988 + MSTD LTR MaLR 48 65 -331 2488 69 3 3 chr1 159649365 159649668 -83014685 + AluSg SINE Alu 1 303 -7 1562 200 17 37 chr1 159649668 159650004 -83014349 + MSTD LTR MaLR 65 395 -1 467 318 61 22 chr1 159650142 159650453 -83013900 - L2 LINE L2 -1042 2272 1950 12375 52 4 1 chr1 159650947 159653273 -83011080 - L1PA4 LINE L1 -98 6057 3724 554 14 14 0 chr1 159653374 159653445 -83010908 - AluY SINE Alu -238 72 1 20425 54 4 1 chr1 159653445 159656194 -83008159 + L1P LINE L1 1832 4586 -1560 1773 179 21 0 chr1 159656298 159656583 -83007770 - AluJb SINE Alu -21 291 1 1652 143 35 3 chr1 159658467 159658781 -83005572 - L1MA1 LINE L1 0 6302 5979 327 234 171 0 chr1 159658812 159658923 -83005430 - MER46C DNA MER2_type -200 138 9 4002 229 89 39 chr1 159659085 159660781 -83003572 - L1ME2 LINE L1 -10 6949 5068 6523 16 7 0 chr1 159660781 159661530 -83002823 + L1PA2 LINE L1 5402 6155 0 4002 229 89 39 chr1 159661530 159662323 -83002030 - L1ME2 LINE L1 -1891 5068 4316 808 309 50 28 chr1 159662322 159663560 -83000793 - L1ME2 LINE L1 -4899 1524 134 * 435 358 56 35 chr1 159663568 159663853 -83000500 + L2 LINE L2 2978 3268 -4 549 280 59 32 chr1 159664034 159664220 -83000133 + MIR SINE MIR 17 207 -55 2268 59 0 4 chr1 159664468 159664740 -82999613 - AluY SINE Alu -7 304 34 945 237 106 76 chr1 159665985 159666643 -82997710 - HAL1 LINE L1 -78 2429 1752 706 205 48 31 chr1 159667294 159667523 -82996830 - HAL1 LINE L1 -760 1747 1515 1226 304 53 9 chr1 159667550 159668232 -82996121 + L2 LINE L2 2596 3312 -1 245 322 12 123 chr1 159668346 159668517 -82995836 + L2 LINE L2 2660 2811 -503 189 0 0 0 chr1 159668582 159668603 -82995750 + (TC)n Simple_repeat Simple_repeat 2 22 0 362 325 83 38 chr1 159668848 159669162 -82995191 + L2 LINE L2 2968 3295 -18 361 300 88 107 chr1 159671614 159671849 -82992504 - L3 LINE CR1 -503 1074 851 2249 126 0 0 chr1 159671849 159672159 -82992194 - AluSg SINE Alu 0 310 1 361 300 88 107 chr1 159672159 159672389 -82991964 - L3 LINE CR1 -726 851 618 1541 200 49 59 chr1 159672422 159672893 -82991460 - MER31B LTR ERV1 0 466 1 288 161 0 0 chr1 159672893 159672949 -82991404 - MER31B-int LTR ERV1 -20 4916 4861 355 263 35 29 chr1 159672951 159673135 -82991218 - MER89-int LTR ERV1 -1558 5243 2751 444 147 0 0 chr1 159673694 159673769 -82990584 + L1 LINE L1 2660 2734 -3412 * 1015 201 91 0 chr1 159673765 159674019 -82990334 + L1 LINE L1 4653 4929 -1217 562 185 15 7 chr1 159674321 159674456 -82989897 + CT-rich Low_complexity Low_complexity 3 138 0 242 241 0 0 chr1 159674456 159674510 -82989843 + T-rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr1 159674721 159674744 -82989609 + AT_rich Low_complexity Low_complexity 1 23 0 364 240 16 16 chr1 159675559 159675680 -82988673 - L1ME3A LINE L1 -206 5964 5844 1965 218 84 50 chr1 159675707 159676040 -82988313 - REP3 LTR ERV -2 560 201 3746 55 8 2 chr1 159676040 159676514 -82987839 + L1PA7 LINE L1 5678 6154 0 1965 218 84 50 chr1 159676514 159676718 -82987635 - REP3 LTR ERV -361 201 5 456 309 76 37 chr1 159676723 159677716 -82986637 - L1ME3A LINE L1 -349 5813 4755 468 324 20 65 chr1 159678967 159679214 -82985139 - MIR SINE MIR -17 245 10 1750 174 0 32 chr1 159679746 159680056 -82984297 + AluJo SINE Alu 1 300 -12 1008 246 228 57 chr1 159680096 159680555 -82983798 - MLT1F1 LTR MaLR -22 545 23 1787 180 22 11 chr1 159680555 159680916 -82983437 + MLT1A1 LTR MaLR 1 365 0 1008 246 228 57 chr1 159680916 159680944 -82983409 - MLT1F1 LTR MaLR -544 23 1 389 232 27 0 chr1 159681077 159681189 -82983164 - LTR33 LTR ERVL -6 515 401 827 216 91 10 chr1 159681342 159681541 -82982812 - LTR33 LTR ERVL -306 215 1 265 389 74 16 chr1 159681581 159681825 -82982528 + L3b LINE CR1 1314 1571 -12 2002 73 0 12 chr1 159684336 159684595 -82979758 - AluY SINE Alu -5 306 51 510 320 23 58 chr1 159684818 159685127 -82979226 - MLT1I LTR MaLR 0 409 112 421 336 7 14 chr1 159685647 159685787 -82978566 + L2 LINE L2 3174 3312 -1 190 321 37 0 chr1 159685827 159685908 -82978445 + MIR SINE MIR 48 131 -131 183 80 0 0 chr1 159686344 159686369 -82977984 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 737 295 32 0 chr1 159686566 159686783 -82977570 - MIR SINE MIR -35 227 4 394 301 61 50 chr1 159687288 159687515 -82976838 + MIR SINE MIR 9 233 -29 205 188 0 0 chr1 159687487 159687519 -82976834 + L2 LINE L2 3210 3241 -31 * 507 279 33 0 chr1 159687941 159688063 -82976290 + MIR SINE MIR 47 172 -90 180 395 116 0 chr1 159688281 159688410 -82975943 - L2 LINE L2 -5 3267 3124 686 252 22 60 chr1 159688947 159689045 -82975308 - MIR SINE MIR -10 252 152 2226 178 59 0 chr1 159689045 159689449 -82974904 + MSTA LTR MaLR 1 428 0 7457 157 80 31 chr1 159689453 159691023 -82973330 + MSTB-int LTR MaLR 5 1651 0 2429 140 68 5 chr1 159691025 159691424 -82972929 + MSTB LTR MaLR 3 426 0 686 252 22 60 chr1 159691424 159691565 -82972788 - MIR SINE MIR -114 148 19 218 152 0 22 chr1 159691573 159691619 -82972734 + CT-rich Low_complexity Low_complexity 4 48 0 197 191 15 88 chr1 159692447 159692515 -82971838 + L2 LINE L2 3183 3245 -68 22 35 0 0 chr1 159692697 159692726 -82971627 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr1 159693499 159693540 -82970813 + AT_rich Low_complexity Low_complexity 1 41 0 236 350 166 9 chr1 159694100 159694317 -82970036 - HAL1 LINE L1 -594 1913 1663 587 286 109 44 chr1 159694323 159694455 -82969898 - HAL1 LINE L1 -898 1609 1487 637 200 32 37 chr1 159694455 159694645 -82969708 - MER53 DNA DNA 0 189 1 587 286 109 44 chr1 159694645 159695107 -82969246 - HAL1 LINE L1 -1020 1487 976 225 0 0 0 chr1 159695614 159695639 -82968714 + (T)n Simple_repeat Simple_repeat 1 25 0 210 255 0 20 chr1 159696098 159696149 -82968204 + L2 LINE L2 3252 3301 -12 360 366 57 1 chr1 159696474 159696614 -82967739 - MIR3 SINE MIR -71 137 12 1770 53 5 0 chr1 159697297 159697505 -82966848 + AluY SINE Alu 87 295 -16 450 356 98 0 chr1 159697674 159697910 -82966443 + MIR SINE MIR 1 259 -3 2116 122 3 7 chr1 159698004 159698338 -82966015 + AluSg SINE Alu 1 310 0 861 268 4 25 chr1 159698765 159699004 -82965349 - MIR SINE MIR -14 248 15 333 47 0 0 chr1 159699050 159699093 -82965260 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2169 120 0 0 chr1 159700046 159700337 -82964016 + AluSx SINE Alu 14 304 -8 664 248 19 6 chr1 159700759 159700920 -82963433 - MER117 DNA MER1_type -5 192 30 315 301 236 0 chr1 159700929 159701052 -82963301 + MIR SINE MIR 22 173 -89 355 209 55 18 chr1 159702169 159702279 -82962074 + L1ME1 LINE L1 6048 6161 -5 2699 32 0 6 chr1 159702321 159702634 -82961719 - AluY SINE Alu 0 311 1 195 100 0 0 chr1 159704430 159704460 -82959893 + (A)n Simple_repeat Simple_repeat 1 30 0 189 333 86 8 chr1 159705986 159706103 -82958250 - L2 LINE L2 -480 2834 2709 245 354 0 0 chr1 159706252 159706334 -82958019 + MER5A DNA MER1_type 7 88 -101 200 329 38 25 chr1 159706273 159706352 -82958001 - MER5A DNA MER1_type -15 174 95 * 6273 91 11 4 chr1 159706574 159708492 -82955861 - L1PA14 LINE L1 -9 6152 4226 5566 199 10 28 chr1 159708503 159709424 -82954929 + L1P LINE L1 2332 3224 -2922 2248 62 0 59 chr1 159709424 159709762 -82954591 + AluY SINE Alu 1 320 0 5566 199 10 28 chr1 159709762 159710191 -82954162 + L1P LINE L1 3224 3659 -2487 207 344 21 21 chr1 159710194 159710290 -82954063 + L2 LINE L2 2738 2833 -481 22 0 0 0 chr1 159710372 159710394 -82953959 + AT_rich Low_complexity Low_complexity 1 22 0 420 328 84 59 chr1 159710409 159710647 -82953706 + L2 LINE L2 3019 3262 -10 2373 79 3 13 chr1 159710948 159711253 -82953100 - AluSp SINE Alu -11 302 1 1272 249 88 29 chr1 159712399 159712420 -82951933 - L2 LINE L2 0 3313 3295 1949 114 44 4 chr1 159712420 159712716 -82951637 - AluSx SINE Alu 0 309 3 1272 249 88 29 chr1 159712716 159713339 -82951014 - L2 LINE L2 -18 3295 2628 550 285 161 5 chr1 159713341 159713534 -82950819 + MER58A DNA MER1_type 1 223 -1 6004 263 85 37 chr1 159713536 159714462 -82949891 - L2 LINE L2 -682 2632 1752 5806 114 32 0 chr1 159714462 159715583 -82948770 - L1PA16 LINE L1 -9 6157 5019 6004 263 85 37 chr1 159715583 159716736 -82947617 - L2 LINE L2 -1562 1752 454 472 329 137 7 chr1 159717017 159717324 -82947029 - L2 LINE L2 -571 2743 2397 3701 107 4 20 chr1 159718839 159719400 -82944953 + MER41A LTR ERV1 3 554 0 258 163 116 35 chr1 159719990 159720076 -82944277 - L1MA9 LINE L1 -33 6279 6187 538 323 53 11 chr1 159720241 159720430 -82943923 - MIR SINE MIR -48 214 18 25 0 0 0 chr1 159720475 159720500 -82943853 + AT_rich Low_complexity Low_complexity 1 25 0 20921 178 23 21 chr1 159720701 159720728 -82943625 - L1PA11 LINE L1 0 7612 7587 3962 129 26 17 chr1 159720728 159721426 -82942927 - L1MA4A LINE L1 -7 6296 5593 20921 178 23 21 chr1 159721426 159722106 -82942247 - L1PA11 LINE L1 -25 7587 6909 1927 175 0 0 chr1 159722106 159722397 -82941956 - AluJb SINE Alu -21 291 1 20921 178 23 21 chr1 159722397 159723906 -82940447 - L1PA11 LINE L1 -703 6909 5404 225 0 0 0 chr1 159723906 159723931 -82940422 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1922 158 0 0 chr1 159723932 159724210 -82940143 - AluSx SINE Alu -34 278 1 20921 178 23 21 chr1 159724210 159728771 -82935582 - L1PA11 LINE L1 -2207 5405 6 9873 164 32 40 chr1 159728780 159731360 -82932993 - L1MA4A LINE L1 -692 5608 3055 330 26 0 0 chr1 159731951 159731990 -82932363 + (CA)n Simple_repeat Simple_repeat 2 40 0 637 277 151 5 chr1 159732226 159732432 -82931921 - MIR SINE MIR -26 236 1 300 231 104 108 chr1 159733422 159733575 -82930778 - L2 LINE L2 -1 3312 3159 2023 134 34 0 chr1 159733575 159733866 -82930487 - AluSg SINE Alu -9 301 1 300 231 104 108 chr1 159733866 159733924 -82930429 - L2 LINE L2 -154 3159 3102 345 278 11 11 chr1 159734133 159734223 -82930130 + L2 LINE L2 3183 3272 0 414 200 48 0 chr1 159734558 159734719 -82929634 + L1MA9 LINE L1 6026 6290 -22 532 264 278 12 chr1 159735321 159735575 -82928778 + L2 LINE L2 2887 3072 -241 3594 139 37 25 chr1 159735575 159736220 -82928133 - MER39B LTR ERV1 0 653 1 532 264 278 12 chr1 159736220 159736299 -82928054 + L2 LINE L2 3072 3309 -4 186 43 0 0 chr1 159736320 159736343 -82928010 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1405 195 92 50 chr1 159737716 159738096 -82926257 - MSTD LTR MaLR 0 396 1 2425 89 0 3 chr1 159739040 159739353 -82925000 - AluSx SINE Alu 0 312 1 271 364 16 0 chr1 159739672 159739801 -82924552 + MIR SINE MIR 120 250 -12 250 278 148 19 chr1 159741447 159741555 -82922798 - L3b LINE CR1 -180 1403 1282 210 150 0 0 chr1 159741943 159741983 -82922370 + (CAT)n Simple_repeat Simple_repeat 3 42 0 209 250 0 26 chr1 159741984 159742142 -82922211 + CT-rich Low_complexity Low_complexity 1 153 0 2318 100 8 30 chr1 159742574 159742944 -82921409 + THE1C LTR MaLR 1 362 -13 9884 114 37 42 chr1 159742969 159744556 -82919797 + THE1C-int LTR MaLR 1 1580 0 2391 115 16 19 chr1 159744557 159744931 -82919422 + THE1C LTR MaLR 3 375 0 1938 147 3 27 chr1 159744943 159745242 -82919111 - AluSx SINE Alu -20 292 1 33 25 0 0 chr1 159745318 159745358 -82918995 + AT_rich Low_complexity Low_complexity 1 40 0 663 285 114 79 chr1 159745493 159746002 -82918351 - MLT1L LTR MaLR -88 527 1 438 20 0 0 chr1 159746509 159746560 -82917793 + (ATG)n Simple_repeat Simple_repeat 1 51 0 626 260 57 11 chr1 159746569 159746746 -82917607 - MIR SINE MIR -21 241 57 326 291 22 4 chr1 159747671 159747772 -82916581 - MIR SINE MIR -103 105 1 410 256 24 32 chr1 159748648 159748773 -82915580 - MIR3 SINE MIR -3 205 82 391 303 56 14 chr1 159799386 159799528 -82864825 + MIR SINE MIR 100 247 -15 * 784 281 55 9 chr1 159799522 159799739 -82864614 - MIR SINE MIR -2 260 34 1238 102 17 0 chr1 159800510 159800687 -82863666 + AluSq SINE Alu 134 313 0 405 278 43 14 chr1 159800708 159800848 -82863505 + LTR33 LTR ERVL 76 199 -324 1357 229 202 7 chr1 159801252 159801663 -82862690 - L2 LINE L2 0 3313 2823 1097 236 40 10 chr1 159802623 159803021 -82861332 - MER69B DNA AcHobo -88 1138 729 279 0 0 0 chr1 159803316 159803347 -82861006 + (CA)n Simple_repeat Simple_repeat 2 32 0 683 228 82 4 chr1 159803838 159804093 -82860260 - Charlie2 DNA MER1_type -14 2848 2574 4067 26 0 0 chr1 159804095 159804594 -82859759 + L1P LINE L1 4036 4534 -1612 212 355 0 0 chr1 159805050 159805112 -82859241 + MIR SINE MIR 23 84 -124 215 250 133 23 chr1 159805945 159806044 -82858309 + L2 LINE L2 1562 1679 -1635 300 27 0 0 chr1 159806044 159806081 -82858272 + (CA)n Simple_repeat Simple_repeat 2 38 0 215 250 133 23 chr1 159806081 159806109 -82858244 + L2 LINE L2 1679 1703 -1611 1934 155 26 31 chr1 159806119 159806505 -82857848 - MLT1B LTR MaLR -6 384 1 3820 275 97 9 chr1 159806522 159807856 -82856497 + L2 LINE L2 1698 3146 -167 1330 137 15 27 chr1 159807856 159808127 -82856226 - L1MA3 LINE L1 -37 6263 5997 2439 221 50 44 chr1 159808145 159808947 -82855406 - THE1C-int LTR MaLR -772 808 2 2525 123 3 0 chr1 159808948 159809322 -82855031 - THE1C LTR MaLR 0 375 1 4505 132 25 2 chr1 159809322 159809541 -82854812 - L1MA3 LINE L1 -288 6017 5805 203 23 91 0 chr1 159809541 159809585 -82854768 + (TA)n Simple_repeat Simple_repeat 1 48 0 4505 132 25 2 chr1 159809585 159810327 -82854026 - L1MA3 LINE L1 -500 5805 5034 3956 174 14 1 chr1 159810328 159811017 -82853336 - L1M1 LINE L1 -6855 710 13 1756 193 32 6 chr1 159811224 159811571 -82852782 + MLT1A1 LTR MaLR 1 356 -9 232 396 42 17 chr1 159811817 159812057 -82852296 + L2 LINE L2 2808 3053 -219 1985 100 50 43 chr1 159812784 159813084 -82851269 + AluSp SINE Alu 1 302 -11 200 261 0 0 chr1 159813318 159813364 -82850989 - L2 LINE L2 -11 3261 3216 280 362 46 20 chr1 159813456 159813608 -82850745 - L2 LINE L2 -15 3257 3102 260 372 50 77 chr1 159816708 159817071 -82847282 + L2 LINE L2 2846 3198 -74 394 135 125 10 chr1 159817494 159817598 -82846755 + LTR33 LTR ERVL 402 517 -4 344 259 135 21 chr1 159817919 159818060 -82846293 + MIR SINE MIR 58 204 -58 1903 177 24 19 chr1 159818450 159818823 -82845530 + THE1C LTR MaLR 1 375 0 221 234 21 0 chr1 159819014 159819061 -82845292 - L2 LINE L2 -16 3297 3250 386 233 12 0 chr1 159819178 159819264 -82845089 + L2 LINE L2 3227 3313 0 323 286 201 0 chr1 159820083 159820237 -82844116 - MIR3 SINE MIR -7 201 17 1870 135 12 9 chr1 159821044 159821378 -82842975 + L1MA4A LINE L1 5969 6303 0 21680 31 1 0 chr1 159821409 159825460 -82838893 + L1PA3 LINE L1 2089 6145 -10 424 224 24 0 chr1 159825482 159825607 -82838746 - Charlie2 DNA MER1_type -295 2567 2440 341 251 105 18 chr1 159825718 159825889 -82838464 - Charlie2 DNA MER1_type -453 2409 2224 * 865 245 221 17 chr1 159825881 159826179 -82838174 - Charlie2 DNA MER1_type -2497 365 7 529 143 0 0 chr1 159826455 159826553 -82837800 - L1MA7 LINE L1 -5 6286 6189 310 255 29 10 chr1 159827210 159827312 -82837041 + GA-rich Low_complexity Low_complexity 1 104 0 878 288 171 29 chr1 159829604 159830194 -82834159 + L2 LINE L2 2622 3313 0 584 261 37 94 chr1 159830649 159830894 -82833459 + MIR SINE MIR 20 250 -12 411 294 147 38 chr1 159830903 159831141 -82833212 + MLT1L LTR MaLR 1 264 -351 24 0 0 0 chr1 159831227 159831251 -82833102 + AT_rich Low_complexity Low_complexity 1 24 0 1635 170 29 0 chr1 159831300 159831576 -82832777 - AluJb SINE Alu -26 286 3 4636 120 55 11 chr1 159831586 159832393 -82831960 - L1MA5 LINE L1 -2 6298 5457 252 284 14 14 chr1 159832452 159832526 -82831827 + MLT1J LTR MaLR 243 316 -195 5634 138 24 11 chr1 159833243 159834834 -82829519 + L1MA8 LINE L1 4644 6259 -32 1888 134 88 0 chr1 159834834 159835154 -82829199 + MER7A DNA MER2_type 1 346 0 5634 138 24 11 chr1 159835154 159835188 -82829165 + L1MA8 LINE L1 6259 6291 0 515 300 150 26 chr1 159835224 159835451 -82828902 - MIR SINE MIR 0 262 8 1841 190 66 30 chr1 159836948 159837374 -82826979 + MLT1C LTR MaLR 21 461 -6 349 275 28 0 chr1 159837380 159837489 -82826864 + CT-rich Low_complexity Low_complexity 5 116 0 1450 240 71 35 chr1 159837678 159838135 -82826218 + MLT1G1 LTR MaLR 3 434 -108 4277 116 145 22 chr1 159838135 159838867 -82825486 - LTR12 LTR ERV1 0 826 5 1962 192 35 63 chr1 159838882 159839502 -82824851 - pTR5 LTR ERV1 -1093 1345 743 431 148 0 37 chr1 159839529 159839610 -82824743 + MLT1G1 LTR MaLR 477 554 -1 187 358 122 81 chr1 159839995 159840330 -82824023 + L2 LINE L2 2812 3160 -112 256 282 26 0 chr1 159840407 159840485 -82823868 + (TCCA)n Simple_repeat Simple_repeat 4 83 0 2287 86 3 0 chr1 159840628 159840919 -82823434 - AluY SINE Alu -19 292 1 342 309 124 52 chr1 159840959 159841169 -82823184 - MIR SINE MIR -35 227 3 1648 88 35 0 chr1 159843077 159843305 -82821048 - AluY SINE Alu -2 309 74 2530 50 0 0 chr1 159843305 159843607 -82820746 - AluY SINE Alu -8 303 1 1538 203 3 17 chr1 159843618 159843909 -82820444 - AluJo SINE Alu -25 287 1 263 347 93 21 chr1 159844829 159845022 -82819331 + L2 LINE L2 2249 2455 -859 706 56 0 0 chr1 159845026 159845116 -82819237 - AluY SINE Alu -5 306 217 432 246 14 56 chr1 159845178 159845320 -82819033 + L2 LINE L2 2531 2666 -648 2353 92 0 0 chr1 159845348 159845654 -82818699 - AluY SINE Alu -5 306 1 1087 275 149 10 chr1 159845948 159846559 -82817794 - HAL1 LINE L1 -712 1795 1100 251 273 125 6 chr1 159847288 159847402 -82816951 - MIR SINE MIR -65 143 15 332 309 85 11 chr1 159847444 159847538 -82816815 + MIR SINE MIR 2 102 -160 870 261 99 22 chr1 159847579 159847901 -82816452 + LTR33 LTR ERVL 24 370 -151 366 281 8 16 chr1 159848001 159848122 -82816231 + LTR33 LTR ERVL 391 510 -11 562 259 50 0 chr1 159848141 159848280 -82816073 + MIR SINE MIR 117 262 0 1183 43 0 19 chr1 159848287 159848449 -82815904 - L1PA5 LINE L1 -912 5234 5076 7025 55 7 1 chr1 159848450 159849363 -82814990 + L1PA5 LINE L1 5231 6148 -6 387 0 0 0 chr1 159849667 159849710 -82814643 + (CA)n Simple_repeat Simple_repeat 1 43 0 322 102 0 0 chr1 159850633 159850682 -82813671 - Alu SINE Alu -1 299 251 770 229 65 69 chr1 159850825 159851070 -82813283 - MIR SINE MIR -1 261 18 187 115 0 0 chr1 159852284 159852310 -82812043 - MIR3 SINE MIR -25 183 158 3279 203 26 73 chr1 159852321 159852991 -82811362 - L1MC3 LINE L1 -169 7616 7002 2242 118 32 3 chr1 159852991 159853339 -82811014 + MER46B DNA MER2_type 1 233 -3 3279 203 26 73 chr1 159853339 159853607 -82810746 - L1MC3 LINE L1 -783 7002 6723 357 298 41 70 chr1 159853607 159853778 -82810575 - MIR3 SINE MIR -41 167 2 846 265 187 33 chr1 159854705 159855154 -82809199 - LTR33 LTR ERVL -3 518 1 284 315 45 9 chr1 159855245 159855356 -82808997 - L2 LINE L2 0 3272 3158 489 169 11 11 chr1 159855702 159855791 -82808562 + L2 LINE L2 3225 3313 0 679 329 98 11 chr1 159857069 159857355 -82806998 + MLT1J1 LTR MaLR 11 321 -125 760 200 0 0 chr1 159857714 159857854 -82806499 - MER82 DNA MER2_type -354 299 160 180 0 0 0 chr1 159858302 159858322 -82806031 + (A)n Simple_repeat Simple_repeat 1 20 0 358 266 266 6 chr1 159859294 159859467 -82804886 - MIR SINE MIR -4 258 41 1264 311 73 42 chr1 159859745 159861281 -82803072 + L1ME3 LINE L1 4 1635 -4675 403 330 53 21 chr1 159861576 159861605 -82802748 + L1ME3 LINE L1 5202 5229 -916 1095 270 75 13 chr1 159861605 159861990 -82802363 - MLT1I LTR MaLR 0 409 1 403 330 53 21 chr1 159861990 159862577 -82801776 + L1ME3 LINE L1 5229 5845 -300 250 211 47 70 chr1 159862856 159862984 -82801369 + L1MC4 LINE L1 7918 8042 0 1818 187 13 7 chr1 159863497 159863802 -82800551 + Tigger5 DNA MER2_type 1 307 -2016 1450 131 0 5 chr1 159863798 159864020 -82800333 + Tigger5 DNA MER2_type 2103 2323 0 * 496 302 119 71 chr1 159864094 159864691 -82799662 + L1MDa LINE L1 1291 1904 -1078 540 45 0 0 chr1 159864691 159864758 -82799595 + (TA)n Simple_repeat Simple_repeat 2 68 0 496 302 119 71 chr1 159864758 159864880 -82799473 + L1MDa LINE L1 1904 2019 -963 214 282 0 51 chr1 159865554 159865632 -82798721 - MIR3 SINE MIR -13 195 122 405 342 36 26 chr1 159865701 159865894 -82798459 + MIR SINE MIR 10 204 -58 2423 209 35 7 chr1 159865911 159866505 -82797848 - L1M4 LINE L1 -1728 4418 3808 36 40 0 0 chr1 159866616 159866666 -82797687 + AT_rich Low_complexity Low_complexity 1 50 0 1823 158 27 3 chr1 159866776 159867068 -82797285 - AluSx SINE Alu -13 299 1 335 345 118 9 chr1 159867220 159867440 -82796913 + MIR SINE MIR 16 259 -3 389 328 64 18 chr1 159867853 159868024 -82796329 - MIR SINE MIR -56 206 28 538 298 73 19 chr1 159868563 159868768 -82795585 - MIR SINE MIR -44 218 3 2091 279 57 64 chr1 159869038 159869711 -82794642 + MER45C DNA AcHobo 1 668 -285 1930 203 36 29 chr1 159869752 159870275 -82794078 - L1M4 LINE L1 -1656 4490 3964 1248 207 45 10 chr1 159870344 159870658 -82793695 + MER45B DNA AcHobo 716 1040 0 21 36 0 0 chr1 159871150 159871178 -82793175 + AT_rich Low_complexity Low_complexity 1 28 0 1248 128 26 13 chr1 159871877 159872111 -82792242 - L1MA4 LINE L1 -16 6284 6048 195 356 45 0 chr1 159872438 159872570 -82791783 + MIR SINE MIR 125 262 0 270 292 0 11 chr1 159872581 159872670 -82791683 + A-rich Low_complexity Low_complexity 4 91 0 1469 206 136 29 chr1 159872715 159873128 -82791225 + MSTB2 LTR MaLR 1 457 0 271 303 179 19 chr1 159874788 159874950 -82789403 + MIR SINE MIR 49 236 -26 2233 117 3 0 chr1 159875180 159875487 -82788866 + AluSq SINE Alu 1 308 -5 220 351 61 34 chr1 159877377 159877525 -82786828 - L2 LINE L2 -222 3050 2899 575 279 15 45 chr1 159878805 159879006 -82785347 - MIR SINE MIR -34 228 34 204 330 11 0 chr1 159880288 159880376 -82783977 - MIR SINE MIR -1 261 173 337 239 33 11 chr1 159880918 159881010 -82783343 + L2 LINE L2 3208 3301 -12 230 190 139 51 chr1 159881100 159881179 -82783174 + L1ME4a LINE L1 5533 5618 -503 637 238 30 121 chr1 159881179 159881511 -82782842 + MLT1J LTR MaLR 1 302 -209 914 281 144 16 chr1 159882228 159882848 -82781505 + L2 LINE L2 2618 3313 0 184 138 0 0 chr1 159883140 159883169 -82781184 - MIR SINE MIR -60 148 120 275 250 109 39 chr1 159883789 159883917 -82780436 + MIR3 SINE MIR 8 144 -64 244 111 0 0 chr1 159883917 159883953 -82780400 + L1MA8 LINE L1 6092 6127 -164 1070 123 43 0 chr1 159884009 159884196 -82780157 + L1MA8 LINE L1 6092 6286 -5 515 223 49 16 chr1 159884223 159884377 -82779976 - MIR SINE MIR 0 262 106 186 229 0 0 chr1 159884415 159884450 -82779903 + MIR SINE MIR 222 256 -6 405 277 123 0 chr1 159884617 159884747 -82779606 + MIR SINE MIR 90 235 -27 418 330 22 6 chr1 159884889 159885071 -82779282 + MER5A DNA MER1_type 4 188 -1 554 283 6 0 chr1 159886214 159886380 -82777973 + MIR SINE MIR 95 261 -1 524 288 52 15 chr1 159887646 159887917 -82776436 + L1ME4a LINE L1 5637 5917 -204 1785 104 0 16 chr1 159888636 159888907 -82775446 - AluSc SINE Alu 0 303 37 681 238 127 104 chr1 159888936 159889150 -82775203 + L1ME4a LINE L1 5508 5716 -405 5957 189 10 22 chr1 159889150 159890996 -82773357 - L1PA15 LINE L1 -4 6161 4328 2197 95 0 3 chr1 159890996 159891305 -82773048 + AluSq SINE Alu 2 309 0 5957 189 10 22 chr1 159891305 159891542 -82772811 - L1PA15 LINE L1 -1837 4328 4090 681 238 127 104 chr1 159891542 159891925 -82772428 + L1ME4a LINE L1 5716 6119 -2 315 238 143 0 chr1 159892067 159892151 -82772202 - MIR SINE MIR -10 252 157 216 0 0 0 chr1 159893187 159893211 -82771142 + (A)n Simple_repeat Simple_repeat 1 24 0 518 287 55 17 chr1 159895047 159895228 -82769125 - MIR SINE MIR -55 207 20 796 296 107 43 chr1 159895476 159895936 -82768417 - LTR16C LTR ERVL -2 489 1 578 289 16 21 chr1 159896013 159896203 -82768150 - MER5A DNA MER1_type 0 189 1 409 288 80 8 chr1 159896262 159896387 -82767966 + MIR SINE MIR 16 149 -113 195 273 61 15 chr1 159897248 159897314 -82767039 - L3b LINE CR1 -219 1364 1296 181 358 9 37 chr1 159897703 159897812 -82766541 + MIR3 SINE MIR 82 187 -21 2692 227 67 24 chr1 159897858 159898484 -82765869 + MER82 DNA MER2_type 1 653 0 186 277 134 25 chr1 159898594 159898713 -82765640 - MIR SINE MIR -91 171 40 21 0 0 0 chr1 159899100 159899121 -82765232 + AT_rich Low_complexity Low_complexity 1 21 0 553 256 77 6 chr1 159899280 159899436 -82764917 - MIR SINE MIR -48 214 48 2182 143 49 54 chr1 159901147 159901166 -82763187 + MSTA LTR MaLR 1 19 -409 538 125 0 0 chr1 159901166 159901246 -82763107 - MADE1 DNA Mariner 0 80 1 2182 143 49 54 chr1 159901246 159901654 -82762699 + MSTA LTR MaLR 19 426 -2 215 31 31 0 chr1 159901984 159902016 -82762337 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 723 188 0 0 chr1 159902101 159902234 -82762119 - FLAM_A SINE Alu 0 133 1 507 126 21 0 chr1 159902997 159903092 -82761261 - MER114 LTR ERV -77 571 475 224 371 19 29 chr1 159903550 159903655 -82760698 - MIR3 SINE MIR -54 154 51 188 33 0 33 chr1 159904682 159904712 -82759641 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 557 253 99 32 chr1 159905080 159905424 -82758929 + L1ME4a LINE L1 5483 5849 -272 220 218 0 36 chr1 159905791 159905846 -82758507 + GA-rich Low_complexity Low_complexity 3 55 0 189 390 85 0 chr1 159906490 159906572 -82757781 - L2 LINE L2 -30 3242 3154 269 282 0 71 chr1 159907021 159907106 -82757247 - MER115 DNA AcHobo -613 80 2 22 0 0 0 chr1 159908225 159908247 -82756106 + AT_rich Low_complexity Low_complexity 1 22 0 345 295 63 0 chr1 159908274 159908369 -82755984 + MIR SINE MIR 89 189 -73 209 289 189 11 chr1 159909331 159909421 -82754932 - L3 LINE CR1 -74 1503 1398 22 0 0 0 chr1 159910252 159910274 -82754079 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr1 159910729 159910766 -82753587 + AT_rich Low_complexity Low_complexity 1 37 0 305 278 55 25 chr1 159910988 159911276 -82753077 + L1ME LINE L1 5123 5424 -742 291 301 78 0 chr1 159911310 159911413 -82752940 + L1ME LINE L1 5508 5618 -503 21 57 0 0 chr1 159911634 159911669 -82752684 + AT_rich Low_complexity Low_complexity 1 35 0 492 114 0 0 chr1 159912351 159912421 -82751932 + AluS SINE Alu 225 294 -15 365 292 42 0 chr1 159914459 159914579 -82749774 + L2 LINE L2 3189 3313 0 441 54 0 0 chr1 159914607 159914663 -82749690 + (TG)n Simple_repeat Simple_repeat 2 57 0 340 241 37 28 chr1 159916107 159916215 -82748138 - MIR SINE MIR -46 216 108 249 290 0 0 chr1 159916644 159916706 -82747647 + GA-rich Low_complexity Low_complexity 1 62 0 544 315 49 69 chr1 159917720 159918295 -82746058 - L2 LINE L2 -10 3303 2746 200 357 14 0 chr1 159919345 159919415 -82744938 - L2 LINE L2 -9 3263 3193 23 0 0 0 chr1 159919537 159919560 -82744793 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 159921710 159921732 -82742621 + AT_rich Low_complexity Low_complexity 1 22 0 1503 238 20 59 chr1 159923319 159923395 -82740958 + L1ME1 LINE L1 5525 5602 -564 2176 121 0 0 chr1 159923395 159923684 -82740669 + AluSx SINE Alu 3 291 -21 1503 238 20 59 chr1 159923684 159924153 -82740200 + L1ME1 LINE L1 5602 6049 -117 288 120 0 0 chr1 159924213 159924263 -82740090 + (TA)n Simple_repeat Simple_repeat 1 50 0 3692 252 37 39 chr1 159924322 159924427 -82739926 + L1ME LINE L1 2944 3048 -3098 1716 182 23 13 chr1 159924427 159924734 -82739619 + AluJo SINE Alu 1 310 -2 3692 252 37 39 chr1 159924734 159925773 -82738580 + L1ME LINE L1 3048 4088 -2058 718 212 71 47 chr1 159925773 159925985 -82738368 - MER20 DNA MER1_type 0 219 3 3692 252 37 39 chr1 159925985 159926650 -82737703 + L1ME LINE L1 4088 4760 -1386 1936 157 0 7 chr1 159926650 159926943 -82737410 + AluJo SINE Alu 1 291 -21 3692 252 37 39 chr1 159926943 159927035 -82737318 + L1ME LINE L1 4760 4851 -1295 186 43 0 0 chr1 159927040 159927063 -82737290 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11239 192 46 41 chr1 159927065 159929601 -82734752 - L1MA4A LINE L1 -12 6993 4470 297 0 0 0 chr1 159929601 159929634 -82734719 + (TG)n Simple_repeat Simple_repeat 2 34 0 11239 192 46 41 chr1 159929634 159931609 -82732744 - L1MA4A LINE L1 -2535 4470 2506 1998 143 0 13 chr1 159931609 159931909 -82732444 + AluSg SINE Alu 1 296 -14 11239 192 46 41 chr1 159931909 159934331 -82730022 - L1MA4A LINE L1 -4499 2506 12 1184 217 75 21 chr1 159934349 159934777 -82729576 + L1ME LINE L1 4855 5305 -841 184 228 70 18 chr1 159935303 159935360 -82728993 + MIR SINE MIR 67 126 -136 182 206 56 103 chr1 159935541 159935648 -82728705 + MIR SINE MIR 53 154 -108 1092 248 84 26 chr1 159936276 159936691 -82727662 + L1ME LINE L1 5323 5761 -405 204 67 0 0 chr1 159936708 159936738 -82727615 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 14645 35 6 0 chr1 159936738 159939275 -82725078 - L1PA4 LINE L1 -11 6144 3594 2249 174 23 35 chr1 159939775 159940206 -82724147 - MSTB LTR MaLR 0 426 1 6508 186 13 27 chr1 159940206 159941559 -82722794 - MSTB-int LTR MaLR 0 1651 319 429 36 0 0 chr1 159941551 159941607 -82722746 - MSTB-int LTR MaLR -1595 56 1 * 990 186 5 5 chr1 159941607 159941800 -82722553 - MSTB LTR MaLR 0 428 236 4434 172 20 22 chr1 159943335 159944049 -82720304 - L1MB3 LINE L1 -2 6417 5699 279 0 0 0 chr1 159944049 159944080 -82720273 + (TG)n Simple_repeat Simple_repeat 2 32 0 4434 172 20 22 chr1 159944080 159944369 -82719984 - L1MB3 LINE L1 -720 5699 5411 * 19478 160 33 18 chr1 159944367 159951968 -82712385 - L1MA1 LINE L1 0 7721 16 204 135 0 0 chr1 159952039 159952076 -82712277 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 4640 130 8 5 chr1 159952077 159953263 -82711090 - L1PA15 LINE L1 -9 6156 5005 3126 206 50 53 chr1 159953263 159953295 -82711058 - L1PA12 LINE L1 -5007 2574 2543 2090 143 3 10 chr1 159953295 159953609 -82710744 + AluJb SINE Alu 1 312 0 3126 206 50 53 chr1 159953609 159954419 -82709934 - L1PA12 LINE L1 -5038 2543 1735 395 329 48 32 chr1 159954425 159954741 -82709612 - L1PA12 LINE L1 -5589 1992 1672 3866 199 43 26 chr1 159954808 159955873 -82708480 - L1MB3 LINE L1 -1037 5345 4263 10922 181 65 12 chr1 159956032 159956181 -82708172 - L1MB3 LINE L1 -3275 3107 2967 2205 181 29 14 chr1 159956181 159956601 -82707752 + MSTB LTR MaLR 1 426 0 10922 181 65 12 chr1 159956601 159957185 -82707168 - L1MB3 LINE L1 -3415 2967 2415 1052 273 61 6 chr1 159957185 159957511 -82706842 + MER2 DNA MER2_type 1 344 0 10922 181 65 12 chr1 159957511 159958196 -82706157 - L1MB3 LINE L1 -3967 2415 1767 198 0 0 0 chr1 159958196 159958218 -82706135 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 10922 181 65 12 chr1 159958218 159959263 -82705090 - L1MB3 LINE L1 -4615 1767 460 2365 78 0 3 chr1 159959263 159959556 -82704797 - AluY SINE Alu -19 292 1 10922 181 65 12 chr1 159959556 159960026 -82704327 - L1MB3 LINE L1 -5922 460 16 616 303 25 46 chr1 159960512 159960793 -82703560 + L2 LINE L2 3030 3304 -9 388 321 62 33 chr1 159961086 159961326 -82703027 + MLT1K LTR MaLR 277 523 -65 189 147 0 0 chr1 159961611 159961645 -82702708 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 447 291 86 14 chr1 159961854 159962064 -82702289 - MIR SINE MIR -26 236 12 2831 179 38 22 chr1 159964358 159965045 -82699308 + L1 LINE L1 4077 4774 -1372 3700 161 30 21 chr1 159966209 159966444 -82697909 + L1P LINE L1 4556 4787 -1359 1537 191 16 29 chr1 159966444 159966758 -82697595 + AluSx SINE Alu 3 312 0 3700 161 30 21 chr1 159966758 159967290 -82697063 + L1P LINE L1 4787 5330 -816 17721 151 16 81 chr1 159967296 159971405 -82692948 + L1P LINE L1 2 3842 -2304 280 273 31 62 chr1 159971539 159971700 -82692653 - L2 LINE L2 -145 3168 3013 682 313 153 15 chr1 159971886 159972285 -82692068 - L2 LINE L2 -20 3293 2840 2073 159 104 5 chr1 159972298 159972720 -82691633 + MLT1C LTR MaLR 1 464 -3 5398 47 29 58 chr1 159973050 159973853 -82690500 + SVA Other Other 1 779 -607 263 146 18 0 chr1 159974408 159974463 -82689890 + CT-rich Low_complexity Low_complexity 3 58 0 24 32 0 0 chr1 159976342 159976373 -82687980 + AT_rich Low_complexity Low_complexity 1 31 0 755 277 58 63 chr1 159976576 159977489 -82686864 + L1ME3A LINE L1 4991 5920 -250 5569 155 11 30 chr1 159977622 159978927 -82685426 + L1PA16 LINE L1 4898 6165 -1 22 35 0 0 chr1 159978927 159978956 -82685397 + AT_rich Low_complexity Low_complexity 1 29 0 606 219 38 66 chr1 159980198 159980381 -82683972 - L1ME3A LINE L1 -328 5842 5665 1703 199 101 35 chr1 159980394 159980881 -82683472 + Charlie1b DNA MER1_type 5 523 0 664 296 94 26 chr1 159980883 159981785 -82682568 - L1ME3A LINE L1 -536 5626 4657 183 294 44 0 chr1 159982229 159982297 -82682056 + L2 LINE L2 3235 3305 -8 1977 179 17 0 chr1 159982396 159982749 -82681604 + MLT1A1 LTR MaLR 1 359 -6 2593 106 79 7 chr1 159983241 159983648 -82680705 + MLT2A1 LTR ERVL 1 436 -8 241 226 83 36 chr1 159983743 159983827 -82680526 - MER103 DNA DNA -59 107 20 405 280 48 83 chr1 159984373 159984541 -82679812 + MER5A DNA MER1_type 23 184 -5 630 291 13 35 chr1 159984606 159984833 -82679520 - MARNA DNA Mariner -95 491 270 303 381 31 0 chr1 159985518 159985678 -82678675 + MIR SINE MIR 98 262 0 6421 80 1 20 chr1 159985979 159986857 -82677496 + SVA Other Other 523 1383 -3 183 369 120 47 chr1 159986890 159987164 -82677189 - L2 LINE L2 -56 3216 2923 233 197 132 79 chr1 159987340 159987416 -82676937 - LTR67 LTR ERVL 0 557 478 235 368 44 18 chr1 159987751 159987865 -82676488 - L2 LINE L2 -612 2702 2586 237 185 11 22 chr1 159988221 159988313 -82676040 + (TA)n Simple_repeat Simple_repeat 1 91 0 957 168 21 26 chr1 159988335 159988526 -82675827 - THE1C LTR MaLR -32 343 154 35719 42 1 4 chr1 159988629 159993886 -82670467 + L1PA4 LINE L1 915 6155 0 194 295 49 16 chr1 159993974 159994035 -82670318 + L2 LINE L2 3197 3259 -54 252 130 43 29 chr1 159994537 159994606 -82669747 + GA-rich Low_complexity Low_complexity 4 73 0 428 289 69 29 chr1 159994817 159994990 -82669363 + MIR SINE MIR 4 183 -79 3353 255 60 28 chr1 159995268 159997602 -82666751 + L1ME2 LINE L1 963 3331 -2884 2399 250 21 60 chr1 159997621 159998715 -82665638 + L1ME2 LINE L1 5194 6403 0 22 0 0 0 chr1 159998916 159998938 -82665415 + AT_rich Low_complexity Low_complexity 1 22 0 295 103 0 0 chr1 159999259 159999298 -82665055 + Alu SINE Alu 3 41 -261 9320 200 17 7 chr1 159999303 160001273 -82663080 - L1P LINE L1 -897 5249 3261 4734 233 21 25 chr1 160001267 160002810 -82661543 - L1PA13 LINE L1 -4520 2267 180 * 1988 126 3 20 chr1 160005147 160005441 -82658912 - AluSx SINE Alu -23 289 1 729 278 144 35 chr1 160006496 160007328 -82657025 + L1MEc LINE L1 1601 2523 -3873 863 148 13 58 chr1 160007450 160007605 -82656748 + AluJo SINE Alu 108 255 -57 183 36 73 36 chr1 160007614 160007669 -82656684 + (TA)n Simple_repeat Simple_repeat 2 58 0 2145 89 85 0 chr1 160007764 160008046 -82656307 + AluSc SINE Alu 1 306 -3 1043 226 106 48 chr1 160008050 160008448 -82655905 + LTR8A LTR ERV1 307 727 0 908 194 93 76 chr1 160008458 160008814 -82655539 - MER34C LTR ERV1 -179 406 45 913 118 0 0 chr1 160008964 160009091 -82655262 + AluSq/x SINE Alu 7 133 -179 1260 91 10 72 chr1 160009105 160009314 -82655039 + AluY SINE Alu 100 295 -16 879 217 0 0 chr1 160009317 160009483 -82654870 + AluJo/FRAM SINE Alu 137 302 0 5393 119 2 25 chr1 160009496 160009552 -82654801 + L1PA15 LINE L1 5319 5375 -790 2204 110 10 3 chr1 160009552 160009860 -82654493 + AluSq SINE Alu 3 312 -1 5393 119 2 25 chr1 160009860 160010666 -82653687 + L1PA15 LINE L1 5375 6161 -4 22 35 0 0 chr1 160011131 160011160 -82653193 + AT_rich Low_complexity Low_complexity 1 29 0 2365 159 36 29 chr1 160011285 160011763 -82652590 - MER34C LTR ERV1 0 585 105 692 232 21 0 chr1 160011765 160011907 -82652446 + FRAM SINE Alu 1 145 -31 248 122 24 0 chr1 160011914 160011955 -82652398 - MER34C LTR ERV1 -509 76 35 323 324 38 0 chr1 160012001 160012106 -82652247 - L1MC/D LINE L1 -2266 5542 5434 204 254 0 18 chr1 160012385 160012440 -82651913 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 625 317 103 57 chr1 160012440 160013147 -82651206 + L1M4 LINE L1 4493 5232 -914 280 308 0 23 chr1 160013162 160013292 -82651061 + L1M LINE L1 5255 5381 -2427 278 114 0 0 chr1 160013328 160013372 -82650981 - L1MC4 LINE L1 -235 7807 7764 343 290 32 0 chr1 160014661 160014754 -82649599 - MIR3 SINE MIR -8 200 105 301 235 0 88 chr1 160015080 160015182 -82649171 + L2 LINE L2 3219 3311 -2 2124 113 10 0 chr1 160015516 160015808 -82648545 + AluSx SINE Alu 1 295 -17 244 268 42 0 chr1 160015811 160015882 -82648471 - MIR SINE MIR -109 153 80 213 371 15 64 chr1 160015960 160016162 -82648191 - L2 LINE L2 -76 3196 3005 494 298 71 6 chr1 160017733 160017901 -82646452 - MIR3 SINE MIR -9 199 21 240 330 39 10 chr1 160017901 160018004 -82646349 + MIR SINE MIR 30 135 -73 6527 75 18 1 chr1 160018770 160020131 -82644222 + L1PA8 LINE L1 4788 6159 -13 5510 135 1 8 chr1 160020133 160020301 -82644052 + L1PA15 LINE L1 5315 5483 -682 2039 103 41 0 chr1 160020301 160020591 -82643762 + AluSc SINE Alu 1 302 -7 5510 135 1 8 chr1 160020591 160021279 -82643074 + L1PA15 LINE L1 5483 6165 0 245 302 12 14 chr1 160021284 160021370 -82642983 + MER5A DNA MER1_type 91 185 -4 531 289 121 25 chr1 160021519 160021758 -82642595 - L3b LINE CR1 -199 1384 1123 796 186 21 46 chr1 160021984 160022178 -82642175 - MER5A DNA MER1_type 0 189 1 205 318 125 11 chr1 160022227 160022315 -82642038 - MIR3 SINE MIR -30 178 81 1153 268 21 29 chr1 160022590 160022930 -82641423 - L2 LINE L2 -922 2392 2056 286 348 17 0 chr1 160022948 160023066 -82641287 - L2 LINE L2 -1809 1505 1386 785 303 45 11 chr1 160023081 160023345 -82641008 - L2 LINE L2 -2089 1225 953 406 301 35 18 chr1 160023818 160023931 -82640422 + MIR SINE MIR 31 145 -117 219 361 39 54 chr1 160023946 160024076 -82640277 + L2 LINE L2 3184 3311 -2 2145 195 50 42 chr1 160024329 160024826 -82639527 + MLT1D LTR MaLR 1 501 -4 1823 299 10 17 chr1 160026485 160027084 -82637269 + L1ME1 LINE L1 23 617 -5779 4712 232 50 11 chr1 160027185 160029331 -82635022 + L1ME1 LINE L1 4010 6381 0 363 214 37 123 chr1 160029728 160029915 -82634438 - MIR SINE MIR -15 247 77 26 30 0 0 chr1 160029939 160029972 -82634381 + AT_rich Low_complexity Low_complexity 1 33 0 303 49 0 0 chr1 160030049 160030090 -82634263 + (CA)n Simple_repeat Simple_repeat 1 41 0 205 366 8 24 chr1 160030922 160031045 -82633308 + L2 LINE L2 2919 3039 -233 1263 224 51 0 chr1 160031502 160031756 -82632597 + Tigger7 DNA MER2_type 1 267 -2220 1133 23 0 0 chr1 160031840 160031971 -82632382 - L1PA5 LINE L1 -8 6146 6016 1394 132 5 0 chr1 160031972 160032177 -82632176 - MER2 DNA MER2_type -139 206 1 471 190 25 0 chr1 160032177 160032256 -82632097 + Tigger7 DNA MER2_type 2505 2585 -2 380 321 212 18 chr1 160032471 160032745 -82631608 - MLT1K LTR MaLR -130 458 132 441 236 84 80 chr1 160034515 160034790 -82629563 - L1ME3A LINE L1 -34 6136 5861 521 269 11 6 chr1 160034985 160035160 -82629193 - L1ME3A LINE L1 -261 5909 5734 678 275 136 13 chr1 160035163 160035399 -82628954 - LTR16A LTR ERVL -133 317 53 293 114 0 23 chr1 160035673 160035717 -82628636 + Alu SINE Alu 1 43 -259 260 139 0 0 chr1 160035714 160035750 -82628603 + Alu SINE Alu 5 40 -261 * 2133 111 0 26 chr1 160035751 160036058 -82628295 + AluSq SINE Alu 5 303 -10 1434 189 93 6 chr1 160036590 160036902 -82627451 - MER2 DNA MER2_type -5 340 2 980 234 17 9 chr1 160037085 160037316 -82627037 - L1PB4 LINE L1 -3 6153 5921 1738 184 28 48 chr1 160037359 160037756 -82626597 + MLT1B LTR MaLR 2 390 0 835 100 0 0 chr1 160037895 160038031 -82626322 + AluSp/q SINE Alu 176 311 0 11360 82 11 6 chr1 160038093 160040454 -82623899 - L1PA7 LINE L1 0 6469 4106 4629 125 26 11 chr1 160040643 160041369 -82622984 - Ricksha DNA DNA -573 2673 1937 824 110 0 0 chr1 160041372 160041481 -82622872 + AluSq/x SINE Alu 4 112 -201 11121 118 11 31 chr1 160041482 160042153 -82622200 - L1PA7 LINE L1 -3654 2807 2124 2498 73 0 6 chr1 160042153 160042466 -82621887 + AluY SINE Alu 1 311 0 11121 118 11 31 chr1 160042466 160044475 -82619878 - L1PA7 LINE L1 -4337 2124 174 1384 113 0 0 chr1 160044620 160044814 -82619539 - L1PA7 LINE L1 -6267 194 1 808 260 62 62 chr1 160044812 160045469 -82618884 - L1MEd LINE L1 -4864 1341 790 * 309 355 35 14 chr1 160048788 160048929 -82615424 - MER5A DNA MER1_type -6 183 40 * 321 326 30 23 chr1 160048803 160048935 -82615418 + MER5A DNA MER1_type 35 167 -22 271 238 0 25 chr1 160048941 160049021 -82615332 - MIR SINE MIR -104 158 81 598 292 99 6 chr1 160049762 160049933 -82614420 + MIR SINE MIR 3 189 -73 4311 116 8 0 chr1 160050169 160050779 -82613574 + L1P LINE L1 9 623 -5523 2370 98 0 0 chr1 160051999 160052305 -82612048 - AluSc SINE Alu -3 306 1 18472 84 7 1 chr1 160053749 160057158 -82607195 - L1PA8 LINE L1 -1 6171 2786 25 0 0 0 chr1 160057542 160057567 -82606786 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 160057595 160057625 -82606728 + AT_rich Low_complexity Low_complexity 1 30 0 3551 148 54 3 chr1 160057625 160058268 -82606085 - L1MA5 LINE L1 -6 6294 5619 1427 156 42 0 chr1 160058268 160058531 -82605822 + L1MA5 LINE L1 5356 5629 -671 237 250 0 0 chr1 160058607 160058644 -82605709 + (CA)n Simple_repeat Simple_repeat 2 41 -8 2031 171 21 0 chr1 160058644 160058984 -82605369 - MER7A DNA MER2_type 0 346 2 237 250 0 0 chr1 160058984 160058994 -82605359 + (CA)n Simple_repeat Simple_repeat 40 49 0 239 167 42 0 chr1 160059306 160059354 -82604999 + L2 LINE L2 3263 3312 -1 793 256 20 5 chr1 160060259 160060458 -82603895 + MLT1A2 LTR MaLR 173 374 0 1462 176 10 3 chr1 160060694 160060984 -82603369 + L1ME1 LINE L1 5275 5566 -2429 300 228 0 0 chr1 160060969 160061026 -82603327 + L1ME1 LINE L1 5940 5996 -170 * 1728 257 50 33 chr1 160061154 160061633 -82602720 + LTR33 LTR ERVL 1 487 -34 21 0 0 0 chr1 160061915 160061936 -82602417 + AT_rich Low_complexity Low_complexity 1 21 0 275 247 0 0 chr1 160062046 160062139 -82602214 + L1MC4 LINE L1 6609 6701 -1341 213 121 0 0 chr1 160062140 160062173 -82602180 + (TA)n Simple_repeat Simple_repeat 1 33 0 305 244 0 24 chr1 160062384 160062466 -82601887 - L1MC4 LINE L1 -1339 6703 6624 2390 57 10 13 chr1 160062832 160063132 -82601221 + AluY SINE Alu 1 299 -12 620 207 171 0 chr1 160063132 160063296 -82601057 + MIR SINE MIR 9 200 -62 29 28 0 0 chr1 160063313 160063349 -82601004 + AT_rich Low_complexity Low_complexity 1 36 0 271 235 66 63 chr1 160063740 160063908 -82600445 - MER63A DNA MER1_type 0 210 1 23 0 0 0 chr1 160064363 160064386 -82599967 + AT_rich Low_complexity Low_complexity 1 23 0 304 342 0 18 chr1 160065626 160065744 -82598609 + MIR SINE MIR 16 132 -76 282 197 53 53 chr1 160066259 160066335 -82598018 + L3b LINE CR1 1109 1184 -399 310 280 28 9 chr1 160067025 160067132 -82597221 + MER103 DNA DNA 55 163 -3 188 303 13 26 chr1 160067165 160067241 -82597112 + L2 LINE L2 3198 3272 0 460 251 74 18 chr1 160067367 160067530 -82596823 + MER69A DNA AcHobo 1 172 -5 1921 129 38 0 chr1 160067757 160068044 -82596309 - AluSx SINE Alu -14 298 1 23 0 0 0 chr1 160068442 160068465 -82595888 + AT_rich Low_complexity Low_complexity 1 23 0 211 226 119 12 chr1 160069433 160069517 -82594836 - L2 LINE L2 0 3313 3221 552 230 37 99 chr1 160070143 160070304 -82594049 + MIR SINE MIR 6 156 -106 1030 281 65 34 chr1 160070318 160070734 -82593619 + L1MEc LINE L1 36 464 -5932 1241 201 25 81 chr1 160070740 160071140 -82593213 + MLT1A1 LTR MaLR 2 457 0 2491 223 39 48 chr1 160071162 160072031 -82592322 + L1MEc LINE L1 516 1376 -5020 592 155 8 16 chr1 160072034 160072163 -82592190 + GA-rich Low_complexity Low_complexity 2 129 0 2004 240 74 36 chr1 160072167 160072885 -82591468 + L1MEc LINE L1 1394 2138 -4258 924 235 45 27 chr1 160072889 160073221 -82591132 + L1MEc LINE L1 2347 2684 -3531 2075 74 19 0 chr1 160073230 160073486 -82590867 + AluSp SINE Alu 39 299 -14 1832 244 26 11 chr1 160073489 160074109 -82590244 + L1MEc LINE L1 2785 3413 -2802 2970 212 13 38 chr1 160074116 160074725 -82589628 - MER77 LTR ERV1 -7 598 5 3241 235 61 13 chr1 160074728 160075676 -82588677 + L1MEc LINE L1 3408 4409 -1806 1653 229 22 3 chr1 160075676 160076034 -82588319 - MLT1A1 LTR MaLR 0 365 1 3241 235 61 13 chr1 160076034 160076095 -82588258 + L1MEc LINE L1 4409 4466 -1749 3053 159 95 25 chr1 160076133 160076723 -82587630 + MER54B LTR ERVL 1 631 -162 388 278 80 90 chr1 160076761 160077182 -82587171 - L2 LINE L2 -224 3089 2661 1579 186 7 10 chr1 160077447 160077753 -82586600 + AluJo SINE Alu 3 307 -5 350 316 20 20 chr1 160078152 160078304 -82586049 + L1MEd LINE L1 622 773 -5346 2504 67 0 9 chr1 160079268 160079584 -82584769 + AluSq SINE Alu 1 313 0 195 304 0 0 chr1 160080805 160080861 -82583492 + L3 LINE CR1 1042 1097 -480 203 337 84 0 chr1 160081859 160081942 -82582411 + L2 LINE L2 3148 3237 -35 188 324 56 0 chr1 160081965 160082036 -82582317 + MIR3 SINE MIR 109 183 -25 513 260 0 12 chr1 160082149 160082316 -82582037 + L1ME3A LINE L1 5690 5849 -321 1084 196 68 14 chr1 160082341 160082560 -82581793 - MER8 DNA MER2_type 0 239 9 1827 178 51 0 chr1 160082587 160082918 -82581435 + MER7A DNA MER2_type 1 346 0 315 313 162 14 chr1 160082984 160083281 -82581072 - MLT1I LTR MaLR -6 403 63 403 253 136 13 chr1 160083497 160083613 -82580740 - L1M4 LINE L1 -851 5295 5154 1704 166 10 55 chr1 160083613 160083920 -82580433 - AluJo SINE Alu -19 293 1 403 253 136 13 chr1 160083920 160083957 -82580396 - L1M4 LINE L1 -992 5154 5123 532 240 94 21 chr1 160084045 160084374 -82579979 - L1M4 LINE L1 -1469 4677 4325 576 279 134 1 chr1 160084380 160084870 -82579483 + L1ME3 LINE L1 5315 5878 -288 337 202 0 29 chr1 160085112 160085216 -82579137 + CT-rich Low_complexity Low_complexity 3 103 0 462 314 80 23 chr1 160085319 160085618 -82578735 + MLT1I LTR MaLR 94 409 0 * 471 295 38 6 chr1 160085618 160085793 -82578560 + Charlie8 DNA MER1_type 82 262 -2155 415 292 30 43 chr1 160086149 160086323 -82578030 - MIR SINE MIR -55 207 38 444 335 79 15 chr1 160087800 160088003 -82576350 - MIR SINE MIR -30 232 17 593 106 0 0 chr1 160088021 160088106 -82576247 - AluJ/FRAM SINE Alu -2 310 226 2159 131 3 7 chr1 160088986 160089292 -82575061 + AluSx SINE Alu 1 305 -7 833 135 0 8 chr1 160089896 160090029 -82574324 + AluJo SINE Alu 1 132 -170 184 385 37 7 chr1 160092318 160092453 -82571900 + L3b LINE CR1 1248 1386 -197 22 0 0 0 chr1 160092654 160092676 -82571677 + AT_rich Low_complexity Low_complexity 1 22 0 229 267 129 10 chr1 160092947 160093048 -82571305 - MIR SINE MIR -13 249 137 181 227 0 45 chr1 160093056 160093100 -82571253 + L2 LINE L2 3021 3062 -251 2482 80 0 0 chr1 160094174 160094476 -82569877 + AluY SINE Alu 1 302 -9 2244 101 3 13 chr1 160094742 160095050 -82569303 - AluSq SINE Alu -8 305 1 498 108 0 0 chr1 160095461 160095535 -82568818 + (CTG)n Simple_repeat Simple_repeat 1 74 0 9677 103 10 0 chr1 160095821 160097980 -82566373 + L1PA7 LINE L1 3982 6154 0 253 273 102 0 chr1 160098488 160098576 -82565777 - MIR SINE MIR -84 178 82 766 204 13 20 chr1 160098675 160098827 -82565526 + AluJo SINE Alu 137 287 -15 203 281 16 0 chr1 160098928 160098992 -82565361 - MIR SINE MIR -102 160 96 5015 129 47 21 chr1 160099251 160100095 -82564258 - L1MA8 LINE L1 -21 6270 5392 2292 106 0 7 chr1 160100095 160100396 -82563957 - AluY SINE Alu -12 299 1 5015 129 47 21 chr1 160100396 160100582 -82563771 - L1MA8 LINE L1 -899 5392 5212 271 306 82 0 chr1 160100848 160100933 -82563420 - L2 LINE L2 -1 3312 3221 680 282 97 41 chr1 160103728 160104090 -82560263 + LTR16A LTR ERVL 74 455 -2 206 224 69 0 chr1 160104118 160104234 -82560119 + (CAAA)n Simple_repeat Simple_repeat 2 125 0 2411 95 0 0 chr1 160104381 160104677 -82559676 + AluSc SINE Alu 1 296 -13 209 293 10 41 chr1 160104696 160104793 -82559560 - MIR SINE MIR -54 154 58 1966 113 7 7 chr1 160104998 160105280 -82559073 + AluSx SINE Alu 31 312 0 21 89 0 0 chr1 160105439 160105495 -82558858 + AT_rich Low_complexity Low_complexity 1 56 0 1197 157 65 44 chr1 160106607 160106901 -82557452 - MER33 DNA MER1_type 0 324 25 336 327 65 45 chr1 160107258 160107457 -82556896 + MIR SINE MIR 2 204 -58 255 360 105 9 chr1 160107834 160107948 -82556405 - MIR SINE MIR -118 144 20 252 0 0 0 chr1 160108229 160108257 -82556096 + (A)n Simple_repeat Simple_repeat 1 28 0 306 0 0 0 chr1 160109523 160109557 -82554796 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 167 0 0 chr1 160109730 160109772 -82554581 + T-rich Low_complexity Low_complexity 2 43 0 204 150 25 0 chr1 160113248 160113288 -82551065 + GA-rich Low_complexity Low_complexity 4 44 0 256 243 174 35 chr1 160114198 160114342 -82550011 - MIR SINE MIR -14 248 85 1055 198 39 0 chr1 160115389 160115596 -82548757 + MER20 DNA MER1_type 5 219 0 733 211 40 0 chr1 160115807 160115959 -82548394 - MER63A DNA MER1_type 0 210 53 21 36 0 0 chr1 160117783 160117811 -82546542 + AT_rich Low_complexity Low_complexity 1 28 0 266 291 29 48 chr1 160118346 160118390 -82545963 - MIR3 SINE MIR -15 193 150 2146 110 14 0 chr1 160118390 160118680 -82545673 - AluSx SINE Alu -18 294 1 266 291 29 48 chr1 160118680 160118738 -82545615 - MIR3 SINE MIR -58 150 93 229 31 0 31 chr1 160118879 160118911 -82545442 + (TG)n Simple_repeat Simple_repeat 1 31 0 1592 172 11 18 chr1 160120360 160120639 -82543714 + AluJb SINE Alu 24 300 -12 1404 233 86 56 chr1 160122388 160122921 -82541432 - MLT1H LTR MaLR 0 549 1 1375 219 32 29 chr1 160123224 160123535 -82540818 + AluJo SINE Alu 1 312 0 207 0 0 0 chr1 160123709 160123732 -82540621 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2067 144 13 24 chr1 160123910 160124284 -82540069 + THE1C LTR MaLR 1 370 -5 2367 108 0 0 chr1 160124285 160124590 -82539763 + AluSg SINE Alu 1 305 -5 1744 206 14 14 chr1 160124673 160125041 -82539312 + MLT1A2 LTR MaLR 3 370 -4 375 257 0 10 chr1 160125509 160125610 -82538743 - MLT1H-int LTR MaLR -1633 102 3 449 157 22 11 chr1 160125707 160125796 -82538557 - MLT1H LTR MaLR -44 505 416 318 141 30 2 chr1 160125796 160125882 -82538471 + MLT1G LTR MaLR 458 585 -4 2137 128 0 13 chr1 160125888 160126200 -82538153 + AluSx SINE Alu 1 308 -4 237 263 13 53 chr1 160128019 160128095 -82536258 + L2 LINE L2 3200 3272 0 1009 94 17 17 chr1 160129021 160129201 -82535152 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 370 169 22 11 chr1 160129205 160129294 -82535059 + GA-rich Low_complexity Low_complexity 3 92 0 427 306 122 27 chr1 160130422 160130644 -82533709 + MIR SINE MIR 1 243 -19 * 494 223 71 0 chr1 160130624 160130736 -82533617 + L2 LINE L2 3190 3309 -4 212 302 8 0 chr1 160131166 160131292 -82533061 + GA-rich Low_complexity Low_complexity 3 129 0 23 0 0 0 chr1 160132154 160132177 -82532176 + AT_rich Low_complexity Low_complexity 1 23 0 11983 117 9 31 chr1 160132877 160135777 -82528576 + L1P3 LINE L1 8 2904 -3557 2157 133 19 32 chr1 160136046 160136415 -82527938 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr1 160137905 160137926 -82526427 + AT_rich Low_complexity Low_complexity 1 21 0 620 339 23 5 chr1 160138040 160138258 -82526095 - MIR SINE MIR -32 230 9 23 0 0 0 chr1 160138525 160138548 -82525805 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr1 160138882 160138929 -82525424 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr1 160141156 160141191 -82523162 + AT_rich Low_complexity Low_complexity 1 35 0 2109 128 0 0 chr1 160141590 160141888 -82522465 + AluSx SINE Alu 2 299 -13 299 274 0 9 chr1 160142329 160142475 -82521878 - L1M LINE L1 -803 5343 5216 286 237 82 67 chr1 160142929 160143064 -82521289 + L2 LINE L2 3115 3251 -62 1453 248 85 68 chr1 160143245 160143729 -82520624 + MLT1G LTR MaLR 1 492 -98 234 335 188 12 chr1 160144224 160144549 -82519804 + L2 LINE L2 1935 2316 -998 274 373 79 0 chr1 160144838 160144964 -82519389 + L2 LINE L2 3178 3313 0 351 317 83 48 chr1 160144992 160145222 -82519131 + L2 LINE L2 2373 2610 -704 387 222 340 0 chr1 160145270 160145414 -82518939 + MIR SINE MIR 60 252 -10 2212 129 0 0 chr1 160145487 160145796 -82518557 + AluSx SINE Alu 1 309 -3 1344 176 121 0 chr1 160145910 160146183 -82518170 - AluJb SINE Alu -6 306 1 199 308 0 0 chr1 160146492 160146544 -82517809 + L2 LINE L2 3220 3271 -1 783 178 91 43 chr1 160146719 160146757 -82517596 - L1MCb LINE L1 -4502 2125 2090 2256 89 13 13 chr1 160146757 160147060 -82517293 - AluSq SINE Alu -10 303 1 783 178 91 43 chr1 160147060 160147327 -82517026 - L1MCb LINE L1 -4537 2090 1654 14095 122 19 18 chr1 160147329 160149963 -82514390 - L1PA8A LINE L1 -3 6443 3818 234 0 0 0 chr1 160149963 160149989 -82514364 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 14095 122 19 18 chr1 160149989 160150499 -82513854 - L1PA8A LINE L1 -2628 3818 3310 7549 132 17 13 chr1 160150499 160150606 -82513747 - L1PA8A LINE L1 -4734 1141 1036 183 100 0 0 chr1 160150606 160150636 -82513717 + (TTG)n Simple_repeat Simple_repeat 1 30 0 7549 132 17 13 chr1 160150636 160151854 -82512499 - L1PA8A LINE L1 -4839 1036 2 291 167 26 51 chr1 160151855 160151933 -82512420 + C-rich Low_complexity Low_complexity 4 79 0 3473 203 44 40 chr1 160151960 160153629 -82510724 - L1MCb LINE L1 -4851 1194 5 1758 184 0 13 chr1 160153779 160154083 -82510270 - AluJo SINE Alu 0 312 13 1957 127 12 52 chr1 160156046 160156370 -82507983 - AluSx SINE Alu -1 311 1 1199 163 84 119 chr1 160156627 160157031 -82507322 + MLT1B LTR MaLR 1 390 0 211 290 0 3 chr1 160157430 160157496 -82506857 - L2 LINE L2 -338 2934 2882 1602 187 3 35 chr1 160157530 160157846 -82506507 + AluJb SINE Alu 1 306 -6 1975 125 0 0 chr1 160157940 160158236 -82506117 + AluSx SINE Alu 18 313 0 1455 172 91 0 chr1 160158525 160158642 -82505711 - L1MA8 LINE L1 -3 6288 6183 2390 91 0 0 chr1 160158642 160158939 -82505414 - AluY SINE Alu -14 297 1 1455 172 91 0 chr1 160158939 160159141 -82505212 - L1MA8 LINE L1 -108 6183 5940 561 120 0 0 chr1 160159141 160159240 -82505113 - AluSc SINE Alu 0 302 204 233 175 0 0 chr1 160159252 160159292 -82505061 + LTR30 LTR ERV1 13 52 -670 793 104 5 140 chr1 160159303 160159496 -82504857 + LTR12 LTR ERV1 68 234 -480 273 172 0 0 chr1 160159553 160159611 -82504742 + LTR12 LTR ERV1 228 285 -429 297 236 11 0 chr1 160159612 160159701 -82504652 + LTR30 LTR ERV1 553 642 -80 649 120 0 0 chr1 160159704 160159804 -82504549 + LTR12 LTR ERV1 615 714 0 1623 101 0 5 chr1 160159804 160160012 -82504341 - AluSc SINE Alu -102 207 1 2048 119 26 106 chr1 160160031 160160486 -82503867 - L1MA8 LINE L1 -371 5929 5511 24 67 0 0 chr1 160160584 160160629 -82503724 + AT_rich Low_complexity Low_complexity 1 45 0 245 50 0 25 chr1 160161188 160161228 -82503125 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 279 342 84 62 chr1 160161629 160161986 -82502367 - L2 LINE L2 -5 3267 2903 352 324 27 60 chr1 160162053 160162386 -82501967 - L2 LINE L2 -71 3242 2921 1667 181 3 39 chr1 160162685 160162995 -82501358 - AluJo SINE Alu -13 299 1 480 245 100 22 chr1 160163192 160163494 -82500859 - L1MC/D LINE L1 -297 5824 5562 764 150 0 0 chr1 160163537 160163650 -82500703 - FLAM_C SINE Alu -30 113 1 699 361 71 21 chr1 160163650 160164315 -82500038 - L1MC/D LINE L1 -1530 4616 3919 255 226 0 39 chr1 160164642 160164744 -82499609 + (TATAA)n Simple_repeat Simple_repeat 2 99 0 4886 158 16 19 chr1 160165793 160166660 -82497693 - MER6 DNA MER2_type 0 865 1 21 0 0 0 chr1 160166854 160166875 -82497478 + AT_rich Low_complexity Low_complexity 1 21 0 504 273 172 19 chr1 160168163 160168372 -82495981 + MIR SINE MIR 7 247 -15 861 236 169 19 chr1 160168779 160168973 -82495380 - L1ME3A LINE L1 -242 5997 5833 231 61 0 0 chr1 160168973 160169006 -82495347 + (TG)n Simple_repeat Simple_repeat 2 34 0 861 236 169 19 chr1 160169006 160169172 -82495181 - L1ME3A LINE L1 -406 5833 5583 2396 280 57 51 chr1 160169303 160169932 -82494421 - L1ME3A LINE L1 -1900 4315 3691 2688 29 0 3 chr1 160169932 160170240 -82494113 - AluY SINE Alu -1 310 4 2396 280 57 51 chr1 160170240 160170447 -82493906 - L1ME3A LINE L1 -2524 3691 3487 2102 91 7 0 chr1 160170447 160170743 -82493610 - AluSc SINE Alu 0 298 1 2296 71 13 29 chr1 160170743 160171050 -82493303 - AluSx SINE Alu -9 303 1 2396 280 57 51 chr1 160171050 160171745 -82492608 - L1ME3A LINE L1 -2728 3487 2764 1680 176 92 35 chr1 160171745 160172148 -82492205 - MSTC LTR MaLR 0 428 3 2396 280 57 51 chr1 160172148 160172644 -82491709 - L1ME3A LINE L1 -3451 2764 2272 581 299 68 52 chr1 160172708 160173502 -82490851 - L1ME3A LINE L1 -4576 1820 1014 2382 115 0 0 chr1 160173689 160174001 -82490352 + AluSx SINE Alu 1 312 0 194 256 23 0 chr1 160174735 160174778 -82489575 - L2 LINE L2 -15 3298 3255 2457 61 0 0 chr1 160174796 160175091 -82489262 - AluY SINE Alu -16 295 1 188 274 155 0 chr1 160176772 160176856 -82487497 - MIR SINE MIR -6 256 160 477 273 64 23 chr1 160177264 160177436 -82486917 - MIR SINE MIR -14 248 70 222 391 83 30 chr1 160177444 160177492 -82486861 - L2 LINE L2 -1062 2252 2208 2429 154 21 43 chr1 160177492 160177918 -82486435 + MSTB2 LTR MaLR 1 418 -39 2113 82 0 0 chr1 160177918 160178175 -82486178 - AluY SINE Alu -16 295 39 2429 154 21 43 chr1 160178175 160178215 -82486138 + MSTB2 LTR MaLR 418 457 0 222 391 83 30 chr1 160178215 160178529 -82485824 - L2 LINE L2 -1106 2208 1871 214 182 78 0 chr1 160180769 160180846 -82483507 + (TA)n Simple_repeat Simple_repeat 1 83 0 531 168 16 8 chr1 160183061 160183186 -82481167 + CT-rich Low_complexity Low_complexity 2 127 0 24 32 0 0 chr1 160183540 160183571 -82480782 + AT_rich Low_complexity Low_complexity 1 31 0 240 163 0 0 chr1 160184123 160184166 -82480187 + CT-rich Low_complexity Low_complexity 1 43 0 2393 80 3 0 chr1 160186199 160186499 -82477854 + AluSg SINE Alu 3 303 -7 285 146 0 0 chr1 160187348 160187396 -82476957 + (CA)n Simple_repeat Simple_repeat 2 49 0 261 0 0 0 chr1 160189484 160189513 -82474840 + (A)n Simple_repeat Simple_repeat 1 29 0 587 320 114 34 chr1 160193531 160194003 -82470350 + L2 LINE L2 2149 2658 -656 180 0 0 0 chr1 160194241 160194261 -82470092 + (TC)n Simple_repeat Simple_repeat 2 21 0 183 250 0 0 chr1 160194263 160194315 -82470038 + (CA)n Simple_repeat Simple_repeat 1 52 0 205 258 48 16 chr1 160196700 160196762 -82467591 - MIR SINE MIR -88 174 111 321 275 107 61 chr1 160197229 160197404 -82466949 + MIR SINE MIR 36 217 -45 330 319 121 0 chr1 160198911 160199068 -82465285 + MER5A DNA MER1_type 14 189 0 185 344 0 16 chr1 160199243 160199307 -82465046 + L2 LINE L2 3251 3313 0 2205 72 0 0 chr1 160199448 160199739 -82464614 - AluY SINE Alu 0 309 19 376 345 84 10 chr1 160201157 160201373 -82462980 - MIR SINE MIR -6 256 25 1211 277 94 24 chr1 160202677 160203371 -82460982 - L2 LINE L2 -1 3312 2546 2186 131 0 0 chr1 160204529 160204826 -82459527 + AluSx SINE Alu 1 297 -15 184 280 21 97 chr1 160205581 160205674 -82458679 + MIR SINE MIR 6 91 -171 222 37 0 0 chr1 160205707 160205734 -82458619 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 444 286 24 0 chr1 160207603 160207729 -82456624 + MIR SINE MIR 109 237 -25 528 16 0 0 chr1 160209873 160209934 -82454419 + (TC)n Simple_repeat Simple_repeat 2 62 0 270 56 0 0 chr1 160209933 160209969 -82454384 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 375 348 53 85 chr1 160210189 160210471 -82453882 - L2 LINE L2 -3 3269 2997 302 277 48 0 chr1 160211180 160211263 -82453090 + L2 LINE L2 3227 3313 0 762 105 0 0 chr1 160211480 160211594 -82452759 + (TTTCC)n Simple_repeat Simple_repeat 2 115 0 220 250 33 0 chr1 160211594 160211654 -82452699 + CT-rich Low_complexity Low_complexity 3 64 0 196 250 25 0 chr1 160211713 160211793 -82452560 + CT-rich Low_complexity Low_complexity 2 83 0 277 264 0 42 chr1 160211994 160212066 -82452287 - L2 LINE L2 -3 3310 3242 261 0 0 0 chr1 160212772 160212801 -82451552 + (TC)n Simple_repeat Simple_repeat 1 29 0 261 119 0 0 chr1 160212800 160212842 -82451511 + (CA)n Simple_repeat Simple_repeat 1 42 0 328 287 52 17 chr1 160214321 160214436 -82449917 - L3 LINE CR1 -12 1565 1447 252 323 158 8 chr1 160215214 160215347 -82449006 - MIR3 SINE MIR -12 196 44 231 295 92 43 chr1 160217238 160217389 -82446964 + MIR SINE MIR 22 175 -63 786 169 0 0 chr1 160217717 160217955 -82446398 + (TA)n Simple_repeat Simple_repeat 1 238 0 236 246 0 0 chr1 160218029 160218086 -82446267 + (CAT)n Simple_repeat Simple_repeat 1 57 0 29 28 0 0 chr1 160219361 160219397 -82444956 + AT_rich Low_complexity Low_complexity 1 36 0 1879 126 52 0 chr1 160219809 160220080 -82444273 - AluSx SINE Alu -27 285 1 192 236 42 28 chr1 160221011 160221083 -82443270 + MIR SINE MIR 124 196 -66 429 247 11 0 chr1 160221671 160221760 -82442593 - MER92A LTR ERV1 -29 383 294 1251 118 59 27 chr1 160221777 160221998 -82442355 - L1MA5 LINE L1 -2 6298 6071 2073 124 6 55 chr1 160221999 160222347 -82442006 - MER1B DNA MER1_type -3 336 6 758 96 8 24 chr1 160222365 160222490 -82441863 - L1MA5 LINE L1 -223 6077 5955 338 281 251 10 chr1 160223316 160223515 -82440838 + MIR SINE MIR 13 259 -3 21 71 0 0 chr1 160223625 160223667 -82440686 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 160224053 160224075 -82440278 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr1 160224181 160224220 -82440133 + AT_rich Low_complexity Low_complexity 1 39 0 1827 154 7 3 chr1 160225355 160225641 -82438712 - AluJb SINE Alu -25 287 1 21 0 0 0 chr1 160225651 160225672 -82438681 + AT_rich Low_complexity Low_complexity 1 21 0 483 95 0 0 chr1 160225957 160226031 -82438322 + (CA)n Simple_repeat Simple_repeat 1 74 0 264 419 26 7 chr1 160226451 160226606 -82437747 - MIR3 SINE MIR -21 187 30 1754 162 19 7 chr1 160226905 160227213 -82437140 + AluJo SINE Alu 1 312 0 464 300 142 0 chr1 160229102 160229335 -82435018 - L2 LINE L2 -56 3257 2992 252 109 65 22 chr1 160229764 160229810 -82434543 + L2 LINE L2 3266 3313 0 1625 236 38 24 chr1 160230639 160231008 -82433345 + MLT1A2 LTR MaLR 1 374 0 584 305 51 16 chr1 160232655 160232899 -82431454 - MIR SINE MIR 0 262 4 23 78 0 0 chr1 160235492 160235543 -82428810 + AT_rich Low_complexity Low_complexity 1 51 0 454 374 6 11 chr1 160236027 160236201 -82428152 + MIR3 SINE MIR 36 208 0 2531 57 0 0 chr1 160236361 160236659 -82427694 + AluY SINE Alu 1 298 -13 251 206 29 137 chr1 160237442 160237544 -82426809 + L3b LINE CR1 1294 1384 -199 1653 170 0 34 chr1 160240044 160240368 -82423985 + AluJb SINE Alu 1 314 0 892 250 78 4 chr1 160240949 160241181 -82423172 - MIR SINE MIR -2 260 12 180 333 118 59 chr1 160242447 160242582 -82421771 - L2 LINE L2 -14 3258 3116 309 278 113 0 chr1 160242709 160242824 -82421529 - MIR SINE MIR -77 185 58 212 334 17 86 chr1 160242897 160243256 -82421097 - L2 LINE L2 -338 2976 2643 246 241 72 12 chr1 160243302 160243385 -82420968 - MER91C DNA MER1_type -34 106 19 376 356 67 0 chr1 160243462 160243597 -82420756 + L2 LINE L2 3129 3272 0 399 311 57 17 chr1 160243668 160243706 -82420647 + MIR SINE MIR 65 100 -162 1784 157 94 0 chr1 160243706 160244024 -82420329 - MER7A DNA MER2_type 0 346 1 399 311 57 17 chr1 160244024 160244162 -82420191 + MIR SINE MIR 100 248 -14 6576 144 8 0 chr1 160244164 160245302 -82419051 - L1P LINE L1 -810 5336 4190 330 98 0 20 chr1 160245293 160245376 -82418977 + L1PA10 LINE L1 6099 6180 0 * 912 290 115 21 chr1 160245394 160245829 -82418524 + LTR16C LTR ERVL 1 476 -15 329 62 21 0 chr1 160246916 160246964 -82417389 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 297 89 0 0 chr1 160247140 160247185 -82417168 + (TG)n Simple_repeat Simple_repeat 2 46 0 735 138 0 9 chr1 160249597 160249713 -82414640 + MER94 DNA DNA 14 128 -6 354 284 11 0 chr1 160250661 160250756 -82413597 - MER5A DNA MER1_type -84 105 10 293 139 0 0 chr1 160253710 160253753 -82410600 - MER105 DNA DNA -161 43 1 21 0 0 0 chr1 160254281 160254302 -82410051 + AT_rich Low_complexity Low_complexity 1 21 0 260 310 52 69 chr1 160254398 160254514 -82409839 - L2 LINE L2 -19 3253 3140 247 204 0 0 chr1 160255947 160255996 -82408357 - MIR3 SINE MIR -13 195 147 219 234 0 21 chr1 160255962 160256009 -82408344 - L3b LINE CR1 -24 1559 1514 * 243 0 0 0 chr1 160256603 160256630 -82407723 + (TA)n Simple_repeat Simple_repeat 1 27 0 286 71 0 36 chr1 160257185 160257241 -82407112 + (TA)n Simple_repeat Simple_repeat 1 54 0 23 33 0 0 chr1 160257681 160257711 -82406642 + AT_rich Low_complexity Low_complexity 1 30 0 490 223 14 51 chr1 160257723 160257891 -82406462 + MIR SINE MIR 30 182 -63 2593 56 0 0 chr1 160260410 160260716 -82403637 + AluY SINE Alu 1 306 -5 197 366 104 67 chr1 160260872 160261489 -82402864 - L2 LINE L2 -829 2485 1846 1440 209 54 14 chr1 160261709 160262063 -82402290 - MLT1A2 LTR MaLR 0 374 7 2107 153 34 3 chr1 160262075 160262428 -82401925 - THE1B LTR MaLR 0 364 1 10558 109 32 10 chr1 160262429 160263973 -82400380 - THE1B-int LTR MaLR -1 1579 1 1981 144 30 43 chr1 160263973 160264025 -82400328 - THE1B LTR MaLR 0 364 313 2363 104 0 3 chr1 160264025 160264334 -82400019 - AluY SINE Alu -3 308 1 1981 144 30 43 chr1 160264334 160264650 -82399703 - THE1B LTR MaLR -51 313 1 1223 282 99 43 chr1 160264721 160265274 -82399079 + MER115 DNA AcHobo 85 668 -25 23 0 0 0 chr1 160266274 160266297 -82398056 + AT_rich Low_complexity Low_complexity 1 23 0 228 209 0 0 chr1 160266795 160266838 -82397515 - MLT1K LTR MaLR -17 571 529 789 282 53 38 chr1 160267770 160268188 -82396165 + MLT1J1 LTR MaLR 1 424 -22 209 160 0 20 chr1 160268232 160268282 -82396071 + CT-rich Low_complexity Low_complexity 2 50 0 565 239 33 6 chr1 160268684 160268864 -82395489 + L1ME3A LINE L1 5653 5837 -333 459 296 105 0 chr1 160269829 160269991 -82394362 + MIR SINE MIR 47 225 -37 523 322 35 26 chr1 160270931 160271360 -82392993 + L1M4 LINE L1 2221 2653 -3493 22 0 0 0 chr1 160271396 160271418 -82392935 + AT_rich Low_complexity Low_complexity 1 22 0 2448 56 3 10 chr1 160271634 160271938 -82392415 - AluY SINE Alu -9 302 1 2371 112 0 0 chr1 160272136 160272440 -82391913 - AluSq SINE Alu -9 304 1 2504 244 31 6 chr1 160273492 160274192 -82390161 + L1ME1 LINE L1 5442 6159 -7 21 36 0 0 chr1 160274539 160274567 -82389786 + AT_rich Low_complexity Low_complexity 1 28 0 1827 201 57 24 chr1 160276412 160277127 -82387226 - MER99 DNA DNA -1 827 7 208 277 191 0 chr1 160277277 160277371 -82386982 + MIR SINE MIR 81 192 -70 236 254 0 28 chr1 160277550 160277621 -82386732 - MER99 DNA DNA -665 163 95 369 246 17 0 chr1 160277953 160278071 -82386282 + MER113 DNA MER1_type? 1 120 -401 554 256 26 39 chr1 160278332 160278389 -82385964 + MER45A DNA AcHobo 25 81 -1500 1790 123 210 11 chr1 160278389 160278577 -82385776 - MSTA LTR MaLR 0 428 279 183 42 0 0 chr1 160278577 160278601 -82385752 + (GA)n Simple_repeat Simple_repeat 1 24 0 1790 123 210 11 chr1 160278601 160278769 -82385584 - MSTA LTR MaLR -149 279 1 554 256 26 39 chr1 160278769 160278867 -82385486 + MER45A DNA AcHobo 81 178 0 10445 98 1 1 chr1 160279393 160280972 -82383381 - L1PA7 LINE L1 -2483 3663 2086 * 10818 85 17 16 chr1 160280971 160283471 -82380882 + L1PA7 LINE L1 3662 6154 0 655 270 0 0 chr1 160283472 160283646 -82380707 - MER115 DNA AcHobo -34 659 486 353 327 25 25 chr1 160283667 160283829 -82380524 - MER115 DNA AcHobo -497 196 35 198 0 0 0 chr1 160284727 160284749 -82379604 + (T)n Simple_repeat Simple_repeat 1 22 0 324 312 82 33 chr1 160284968 160285164 -82379189 + MIR3 SINE MIR 8 216 -46 371 258 170 6 chr1 160286388 160286547 -82377806 + MIR SINE MIR 78 262 0 23 33 0 0 chr1 160287024 160287054 -82377299 + AT_rich Low_complexity Low_complexity 1 30 0 182 424 61 0 chr1 160287292 160287391 -82376962 - L2 LINE L2 -86 3186 3082 1062 204 29 0 chr1 160287772 160287978 -82376375 + MER20 DNA MER1_type 8 219 0 281 188 29 0 chr1 160288662 160288731 -82375622 + AluS SINE Alu 229 299 -2 21 82 0 0 chr1 160289623 160289672 -82374681 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr1 160290166 160290188 -82374165 + AT_rich Low_complexity Low_complexity 1 22 0 270 324 72 29 chr1 160290448 160290587 -82373766 + MIR3 SINE MIR 42 186 -22 305 137 0 0 chr1 160290641 160290692 -82373661 - MLT2A1 LTR ERVL 0 444 394 208 206 0 0 chr1 160290692 160290726 -82373627 + (CA)n Simple_repeat Simple_repeat 1 34 0 300 183 0 17 chr1 160290726 160290786 -82373567 - L1MCa LINE L1 -4362 2064 2006 2904 78 13 18 chr1 160290807 160291223 -82373130 - MLT2A1 LTR ERVL -40 480 1 3433 99 4 0 chr1 160291245 160291741 -82372612 + L1PA13 LINE L1 5661 6158 -5 418 303 93 12 chr1 160291870 160292032 -82372321 + MIR SINE MIR 10 184 -78 654 297 156 24 chr1 160292104 160292444 -82371909 - L2 LINE L2 -1 3312 2928 393 299 52 8 chr1 160292439 160292573 -82371780 - L2 LINE L2 -497 2817 2678 * 668 253 40 0 chr1 160292577 160292751 -82371602 - MER20 DNA MER1_type -6 213 33 1448 238 5 29 chr1 160292799 160293177 -82371176 - L2 LINE L2 -644 2670 2302 4494 273 97 16 chr1 160293784 160295252 -82369101 - L2 LINE L2 -1007 2307 721 29 47 0 0 chr1 160296020 160296063 -82368290 + AT_rich Low_complexity Low_complexity 1 43 0 189 247 42 105 chr1 160296077 160296213 -82368140 + L2 LINE L2 3147 3313 0 608 263 61 30 chr1 160296411 160296609 -82367744 + MIR3 SINE MIR 3 206 -2 365 321 36 15 chr1 160297378 160297515 -82366838 + MIR SINE MIR 2 141 -121 2467 50 0 3 chr1 160297613 160297912 -82366441 - AluY SINE Alu -13 298 1 1020 198 6 0 chr1 160298118 160298295 -82366058 + MER45A DNA AcHobo 1 178 0 2295 111 3 0 chr1 160298385 160298691 -82365662 - AluSx SINE Alu -5 307 1 1817 144 19 35 chr1 160298720 160299033 -82365320 + AluJo SINE Alu 1 308 -4 747 240 181 0 chr1 160299219 160299440 -82364913 + MIR SINE MIR 2 262 0 264 352 107 25 chr1 160299707 160299866 -82364487 - L2 LINE L2 -1 3271 3100 21 57 0 0 chr1 160300145 160300180 -82364173 + AT_rich Low_complexity Low_complexity 1 35 0 26 64 0 0 chr1 160302408 160302455 -82361898 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr1 160302789 160302812 -82361541 + AT_rich Low_complexity Low_complexity 1 23 0 633 335 23 5 chr1 160303079 160303297 -82361056 + MIR SINE MIR 9 230 -32 21 0 0 0 chr1 160303411 160303432 -82360921 + AT_rich Low_complexity Low_complexity 1 21 0 2180 136 19 27 chr1 160304921 160305288 -82359065 - THE1B LTR MaLR 0 364 1 520 340 0 9 chr1 160305344 160305559 -82358794 + Charlie8 DNA MER1_type 2 214 -2203 28041 122 14 57 chr1 160306295 160308780 -82355573 + L1PA7 LINE L1 13 2604 -3550 2035 147 0 3 chr1 160308780 160309093 -82355260 + AluSx SINE Alu 1 312 0 28041 122 14 57 chr1 160309093 160313038 -82351315 + L1PA7 LINE L1 2604 6154 0 217 219 0 0 chr1 160313215 160313256 -82351097 + (CA)n Simple_repeat Simple_repeat 2 42 0 1085 206 87 63 chr1 160313407 160313694 -82350659 + AluJo SINE Alu 1 294 -8 28 61 0 0 chr1 160313719 160313768 -82350585 + AT_rich Low_complexity Low_complexity 1 49 0 254 316 48 34 chr1 160313817 160314232 -82350121 + L1MC4a LINE L1 3287 3707 -2439 312 332 70 25 chr1 160314244 160314443 -82349910 + L1MC4a LINE L1 3722 3929 -2217 26 30 0 0 chr1 160314451 160314484 -82349869 + AT_rich Low_complexity Low_complexity 1 33 0 331 356 56 18 chr1 160314623 160314907 -82349446 + L1MC4a LINE L1 4399 4693 -1453 236 206 0 27 chr1 160314936 160315009 -82349344 + L1MC4a LINE L1 4758 4828 -1318 375 304 66 41 chr1 160315571 160316008 -82348345 + L1MC4a LINE L1 5455 5902 -1906 27 49 0 0 chr1 160316049 160316090 -82348263 + AT_rich Low_complexity Low_complexity 1 41 0 280 172 17 17 chr1 160316157 160316215 -82348138 + MLT1J2 LTR MaLR 87 144 -306 2263 107 0 28 chr1 160317155 160317474 -82346879 + AluY SINE Alu 1 310 -1 1544 275 81 9 chr1 160317505 160318073 -82346280 + L1MEc LINE L1 74 682 -5714 1692 166 21 18 chr1 160318089 160318191 -82346162 + AluSx SINE Alu 2 102 -210 2288 147 28 8 chr1 160318191 160318544 -82345809 + THE1B LTR MaLR 5 364 0 11571 92 12 18 chr1 160318544 160320133 -82344220 + THE1B-int LTR MaLR 1 1580 0 2066 161 43 6 chr1 160320135 160320484 -82343869 + THE1B LTR MaLR 3 364 0 1692 166 21 18 chr1 160320484 160320687 -82343666 + AluSx SINE Alu 102 312 0 1562 230 43 30 chr1 160320688 160321319 -82343034 + L1MEc LINE L1 662 1300 -5096 720 124 8 197 chr1 160321321 160321580 -82342773 + MER2 DNA MER2_type 1 210 -135 235 229 0 0 chr1 160321580 160321641 -82342712 + T-rich Low_complexity Low_complexity 4 64 0 753 264 142 23 chr1 160321712 160321940 -82342413 + L1MEc LINE L1 1317 1516 -4880 2294 193 48 48 chr1 160321940 160322542 -82341811 - MER7C DNA MER2_type 0 602 1 753 264 142 23 chr1 160322542 160322756 -82341597 + L1MEc LINE L1 1516 1812 -4584 360 326 57 9 chr1 160322784 160323014 -82341339 + L1M4b LINE L1 8 248 -6611 1447 256 77 63 chr1 160323543 160324458 -82339895 + L1M4b LINE L1 1183 2145 -4814 1550 146 0 4 chr1 160324458 160324691 -82339662 + AluJb SINE Alu 73 304 -8 1447 256 77 63 chr1 160324691 160324838 -82339515 + L1M4b LINE L1 2145 2288 -4671 685 250 56 11 chr1 160325808 160326013 -82338340 + MIR SINE MIR 7 220 -42 21 0 0 0 chr1 160329539 160329560 -82334793 + AT_rich Low_complexity Low_complexity 1 21 0 1169 246 24 24 chr1 160380261 160380635 -82283718 - THE1C LTR MaLR -1 374 1 1649 156 23 17 chr1 160380642 160380956 -82283397 - THE1C-int LTR MaLR -7 1573 1299 * 6253 113 54 8 chr1 160380952 160381867 -82282486 - THE1C-int LTR MaLR -623 957 1 2015 117 106 6 chr1 160381867 160382208 -82282145 - THE1C LTR MaLR 0 375 1 225 263 0 18 chr1 160382224 160382281 -82282072 - L1M3c LINE L1 -6084 57 2 203 227 0 93 chr1 160382780 160382855 -82281498 + L2 LINE L2 3246 3313 0 26 64 0 0 chr1 160382811 160382858 -82281495 + AT_rich Low_complexity Low_complexity 1 47 0 * 873 333 93 48 chr1 160383354 160383664 -82280689 - L2 LINE L2 -192 3080 2785 857 50 0 0 chr1 160383664 160383999 -82280354 + AluY SINE Alu 1 335 0 873 333 93 48 chr1 160383999 160384795 -82279558 - L2 LINE L2 -487 2785 1881 21 0 0 0 chr1 160384932 160384953 -82279400 + AT_rich Low_complexity Low_complexity 1 21 0 3894 245 84 65 chr1 160385374 160385774 -82278579 - L1MEc LINE L1 -4173 2223 1832 1485 175 4 16 chr1 160385774 160386025 -82278328 - AluJb SINE Alu -64 248 1 3894 245 84 65 chr1 160386025 160387172 -82277181 - L1MEc LINE L1 -4564 1832 625 219 69 0 0 chr1 160387172 160387201 -82277152 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3894 245 84 65 chr1 160387201 160387722 -82276631 - L1MEc LINE L1 -5771 625 115 809 279 86 87 chr1 160387799 160388991 -82275362 + L1MC4 LINE L1 6698 7888 -154 417 303 76 27 chr1 160389288 160389658 -82274695 + L1M4 LINE L1 4628 5015 -1131 449 117 0 13 chr1 160390318 160390395 -82273958 + L1PA15 LINE L1 5707 5782 -521 4825 140 12 2 chr1 160390395 160391490 -82272863 + L1PA15 LINE L1 4927 6029 -136 1896 152 18 18 chr1 160391492 160391828 -82272525 + L1PA15 LINE L1 5825 6160 -5 23 33 0 0 chr1 160391870 160391900 -82272453 + AT_rich Low_complexity Low_complexity 1 30 0 1077 93 136 59 chr1 160391922 160392158 -82272195 + L1MA4A LINE L1 5776 6029 -274 277 360 41 0 chr1 160392759 160392884 -82271469 - MIR SINE MIR -71 137 19 2278 114 0 0 chr1 160393047 160393344 -82271009 + AluSg SINE Alu 1 297 -13 802 278 118 46 chr1 160397168 160397729 -82266624 + L2 LINE L2 2573 3187 -126 201 74 0 0 chr1 160397749 160397776 -82266577 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 29 28 0 0 chr1 160398900 160398936 -82265417 + AT_rich Low_complexity Low_complexity 1 36 0 363 281 151 7 chr1 160399010 160399149 -82265204 - MIR SINE MIR -86 176 18 254 348 137 1 chr1 160399327 160399441 -82264912 + MIR SINE MIR 12 140 -68 383 176 118 0 chr1 160400487 160400589 -82263764 - LTR37A LTR ERV1 0 426 313 1777 164 28 51 chr1 160400598 160400989 -82263364 + MLT1B LTR MaLR 1 382 -8 766 201 31 85 chr1 160401007 160401301 -82263052 - LTR37B LTR ERV1 -117 351 74 2925 222 70 18 chr1 160401849 160402665 -82261688 + L1ME1 LINE L1 4557 5330 -836 1675 51 28 0 chr1 160402665 160402879 -82261474 + L1PA7 LINE L1 5935 6154 0 2925 222 70 18 chr1 160402879 160403577 -82260776 + L1ME1 LINE L1 5330 6148 -18 288 154 0 0 chr1 160404147 160404199 -82260154 + (CA)n Simple_repeat Simple_repeat 2 53 0 740 366 11 25 chr1 160404511 160404795 -82259558 - L2 LINE L2 -3 3269 2990 2314 84 13 10 chr1 160404921 160405230 -82259123 - AluSg SINE Alu 0 310 1 621 219 120 56 chr1 160405381 160405614 -82258739 + MIR SINE MIR 15 262 0 382 283 92 0 chr1 160405692 160405844 -82258509 - MIR SINE MIR -48 214 49 1705 157 11 25 chr1 160406464 160406777 -82257576 - AluJo SINE Alu 0 309 1 1562 197 10 14 chr1 160407682 160407971 -82256382 + AluJb SINE Alu 1 288 -24 25 0 0 0 chr1 160407974 160407999 -82256354 + AT_rich Low_complexity Low_complexity 1 25 0 461 266 78 0 chr1 160408017 160408145 -82256208 - MIR SINE MIR -73 189 52 200 267 0 0 chr1 160408738 160408783 -82255570 + GA-rich Low_complexity Low_complexity 1 45 0 444 37 0 0 chr1 160409328 160409382 -82254971 + (CA)n Simple_repeat Simple_repeat 2 55 0 25 0 0 0 chr1 160411435 160411460 -82252893 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr1 160412658 160412685 -82251668 + AT_rich Low_complexity Low_complexity 1 27 0 35681 88 7 11 chr1 160414263 160420399 -82243954 + L1PA6 LINE L1 11 6121 -33 194 271 17 17 chr1 160421064 160421123 -82243230 + L2 LINE L2 3210 3268 -4 213 224 0 20 chr1 160422851 160422900 -82241453 - L2 LINE L2 -5 3267 3220 221 316 92 10 chr1 160423062 160423160 -82241193 - MER91A DNA MER1_type -1 195 90 206 402 36 0 chr1 160423159 160423271 -82241082 - MER91A DNA MER1_type -20 176 61 * 1499 177 122 4 chr1 160424303 160424574 -82239779 + AluJb SINE Alu 9 311 -1 442 286 104 0 chr1 160425375 160425529 -82238824 - MIR SINE MIR -79 183 14 241 357 63 55 chr1 160426673 160427071 -82237282 + L2 LINE L2 1385 1785 -1529 1209 148 0 5 chr1 160427073 160427282 -82237071 - L1MA4 LINE L1 -14 6286 6079 288 209 47 23 chr1 160427349 160427435 -82236918 - MLT1K LTR MaLR -20 568 481 276 283 96 32 chr1 160427496 160427683 -82236670 - MLT1L LTR MaLR -229 386 188 1041 207 5 0 chr1 160427746 160427949 -82236404 + MER20 DNA MER1_type 1 204 -15 893 297 106 26 chr1 160428121 160428594 -82235759 - MLT1J LTR MaLR 0 615 3 1433 171 136 11 chr1 160428731 160428995 -82235358 + AluJb SINE Alu 2 298 -4 271 320 55 76 chr1 160429022 160429433 -82234920 + L2 LINE L2 2826 3311 -2 355 307 48 54 chr1 160429434 160429600 -82234753 - MIR SINE MIR -62 200 36 21 0 0 0 chr1 160429619 160429640 -82234713 + AT_rich Low_complexity Low_complexity 1 21 0 879 316 98 13 chr1 160429855 160430408 -82233945 + MLT1L LTR MaLR 8 607 -8 28 0 0 0 chr1 160430977 160431005 -82233348 + AT_rich Low_complexity Low_complexity 1 28 0 182 289 0 0 chr1 160431173 160431218 -82233135 - MIR3 SINE MIR -31 177 133 223 239 45 102 chr1 160431455 160431543 -82232810 + MIR SINE MIR 4 86 -176 750 298 38 64 chr1 160431546 160431999 -82232354 - MLT1J LTR MaLR 0 511 71 328 206 55 0 chr1 160432059 160432132 -82232221 + MIR SINE MIR 92 168 -94 1013 200 63 0 chr1 160432192 160432397 -82231956 - MER20 DNA MER1_type 0 219 2 184 266 203 0 chr1 160432623 160432702 -82231651 + L2 LINE L2 3186 3280 -33 710 319 84 32 chr1 160432753 160433086 -82231267 - LTR67 LTR ERVL 0 557 243 1416 236 33 81 chr1 160433086 160433544 -82230809 + MLT2B1 LTR ERVL 1 479 -41 2122 139 0 0 chr1 160433544 160433838 -82230515 - AluSx SINE Alu -18 294 1 1416 236 33 81 chr1 160433838 160433876 -82230477 + MLT2B1 LTR ERVL 479 472 -48 191 88 29 0 chr1 160433876 160433910 -82230443 + (TA)n Simple_repeat Simple_repeat 1 35 0 1416 236 33 81 chr1 160433910 160433958 -82230395 + MLT2B1 LTR ERVL 471 520 0 710 319 84 32 chr1 160433958 160434148 -82230205 - LTR67 LTR ERVL -314 243 7 226 321 0 0 chr1 160434359 160434440 -82229913 + polypyrimidine Low_complexity Low_complexity 1 81 0 1716 181 10 0 chr1 160434482 160434774 -82229579 + AluJb SINE Alu 1 295 -17 1521 172 47 0 chr1 160434906 160435185 -82229168 + AluSq SINE Alu 1 292 -21 4170 133 8 1 chr1 160435185 160435833 -82228520 - L1PB3 LINE L1 -1 6153 5502 1830 143 104 21 chr1 160435958 160436294 -82228059 + THE1B LTR MaLR 1 364 0 10832 99 20 33 chr1 160436294 160437895 -82226458 + THE1B-int LTR MaLR 1 1580 0 2197 113 57 28 chr1 160437895 160438249 -82226104 + THE1B LTR MaLR 1 364 0 6557 52 25 0 chr1 160438276 160439092 -82225261 - L1PA7 LINE L1 -4 6150 5315 1791 109 4 0 chr1 160439091 160439357 -82224996 + L1P LINE L1 3375 3641 -2505 * 274 296 82 67 chr1 160439610 160439999 -82224354 - L1ME LINE L1 -514 5652 5258 2096 102 0 63 chr1 160440060 160440393 -82223960 - AluSq SINE Alu -1 312 1 366 61 0 0 chr1 160440462 160440498 -82223855 + (TG)n Simple_repeat Simple_repeat 1 85 0 366 61 0 0 chr1 160440498 160440547 -82223806 + (TG)n Simple_repeat Simple_repeat 1 49 0 231 291 64 73 chr1 160440660 160440894 -82223459 - L1ME LINE L1 -1132 5014 4783 4281 97 5 0 chr1 160440931 160441530 -82222823 - L1MA2 LINE L1 -42 6262 5661 2064 151 41 60 chr1 160441531 160441968 -82222385 + LTR3 LTR ERVK 1 429 0 631 40 0 0 chr1 160441969 160442043 -82222310 + LTR3b LTR ERVK 427 500 0 2001 97 0 0 chr1 160442043 160442321 -82222032 - L1MA2 LINE L1 -638 5666 5389 27 62 0 0 chr1 160442458 160442506 -82221847 + AT_rich Low_complexity Low_complexity 1 48 0 386 311 149 24 chr1 160442509 160443628 -82220725 - L1ME LINE L1 -1542 4604 3362 2621 176 8 2 chr1 160443856 160444340 -82220013 - L1MA4 LINE L1 -26 6274 5788 1464 245 74 17 chr1 160444444 160445040 -82219313 - MER114 LTR ERV -3 645 16 1650 173 0 18 chr1 160445228 160445506 -82218847 - AluJo SINE Alu -39 273 1 3101 16 0 2 chr1 160445787 160446224 -82218129 - L1PA3 LINE L1 -537 5618 5183 4667 17 0 0 chr1 160446224 160446753 -82217600 + L1PA3 LINE L1 5625 6155 0 28 48 0 0 chr1 160447191 160447233 -82217120 + AT_rich Low_complexity Low_complexity 1 42 0 243 169 210 16 chr1 160447239 160447363 -82216990 - MER5C DNA MER1_type -42 282 135 228 205 0 0 chr1 160449836 160449875 -82214478 + MER45 DNA AcHobo 1542 1580 -1 359 268 71 0 chr1 160450006 160450118 -82214235 - MER5C DNA MER1_type -203 121 2 2598 39 0 7 chr1 160450279 160450585 -82213768 - AluY SINE Alu -7 304 1 245 316 105 0 chr1 160451061 160451156 -82213197 - MIR SINE MIR -132 130 26 5650 163 25 19 chr1 160451170 160451988 -82212365 - L1MA8 LINE L1 0 6291 5480 2258 104 3 3 chr1 160451988 160452295 -82212058 - AluSq SINE Alu -6 307 1 5650 163 25 19 chr1 160452295 160453530 -82210823 - L1MA8 LINE L1 -811 5480 4223 244 195 98 0 chr1 160453533 160453581 -82210772 + L1 LINE L1 3438 3480 -2666 369 50 267 0 chr1 160453581 160453641 -82210712 + MADE1 DNA Mariner 5 80 0 244 195 98 0 chr1 160453641 160453674 -82210679 + L1 LINE L1 3480 3527 -2619 904 125 0 0 chr1 160453676 160453796 -82210557 + AluSq/x SINE Alu 8 127 -186 409 145 0 0 chr1 160453796 160453865 -82210488 + Alu SINE Alu 235 303 -8 3697 150 25 40 chr1 160453865 160454211 -82210142 + L1 LINE L1 3518 3868 -2278 2294 114 5 37 chr1 160454211 160454587 -82209766 + THE1B LTR MaLR 1 364 0 3697 150 25 40 chr1 160454587 160454975 -82209378 + L1 LINE L1 3868 4241 -1905 791 237 45 6 chr1 160455261 160455438 -82208915 - MER5A DNA MER1_type -1 188 5 253 245 32 43 chr1 160456313 160456407 -82207946 - LTR16C LTR ERVL -31 460 368 1548 279 100 33 chr1 160456758 160457046 -82207307 + HAL1b LINE L1 261 528 -820 1902 163 7 0 chr1 160457046 160457347 -82207006 + AluSx SINE Alu 1 303 -9 1548 279 100 33 chr1 160457347 160457850 -82206503 + HAL1b LINE L1 528 1105 -243 201 200 20 0 chr1 160458791 160458841 -82205512 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4246 206 73 68 chr1 160458871 160460572 -82203781 + L1MC4a LINE L1 6098 7807 -1 2432 93 0 3 chr1 160460875 160461188 -82203165 - AluSq SINE Alu -1 312 1 22 35 0 0 chr1 160461402 160461431 -82202922 + AT_rich Low_complexity Low_complexity 1 29 0 1945 163 74 25 chr1 160462302 160462556 -82201797 + MSTA LTR MaLR 3 287 -141 8323 31 6 0 chr1 160462556 160464340 -82200013 + L1PA3 LINE L1 4389 6177 0 1945 163 74 25 chr1 160464340 160464488 -82199865 + MSTA LTR MaLR 287 426 -2 562 335 10 15 chr1 160464909 160465106 -82199247 + MIR3 SINE MIR 3 198 -10 21 0 0 0 chr1 160465402 160465423 -82198930 + AT_rich Low_complexity Low_complexity 1 21 0 1365 258 24 29 chr1 160465747 160466172 -82198181 + L1ME2 LINE L1 5725 6150 -14 349 312 39 32 chr1 160466215 160466369 -82197984 + L1ME LINE L1 5519 5673 -497 2091 97 4 0 chr1 160466693 160466962 -82197391 + AluSx SINE Alu 27 296 -16 376 320 103 0 chr1 160468506 160468662 -82195691 + L2 LINE L2 3098 3269 -3 254 324 48 9 chr1 160468729 160468834 -82195519 + MIR SINE MIR 98 206 -56 545 297 22 39 chr1 160469143 160469375 -82194978 + MIR SINE MIR 11 238 -24 346 287 133 0 chr1 160471232 160471375 -82192978 - MIR SINE MIR 0 262 101 6372 121 5 6 chr1 160472129 160473118 -82191235 - L1P LINE L1 -1429 4717 3730 4085 99 7 2 chr1 160473117 160473954 -82190399 + L1P4 LINE L1 4752 5594 -574 * 1264 96 0 0 chr1 160473954 160474132 -82190221 + AluYa5 SINE Alu 127 304 -7 207 292 21 0 chr1 160474299 160474347 -82190006 + L2 LINE L2 3134 3182 -90 234 279 82 48 chr1 160474367 160474514 -82189839 + MIR SINE MIR 111 262 0 343 316 70 23 chr1 160474597 160474768 -82189585 + MIR3 SINE MIR 15 193 -15 21 57 0 0 chr1 160474817 160474852 -82189501 + AT_rich Low_complexity Low_complexity 1 35 0 1904 219 5 72 chr1 160476902 160477474 -82186879 - L1ME2 LINE L1 -10 6154 5621 21 57 0 0 chr1 160477739 160477774 -82186579 + AT_rich Low_complexity Low_complexity 1 35 0 777 210 19 19 chr1 160477776 160477938 -82186415 - AluJo SINE Alu -30 282 121 243 226 48 0 chr1 160477947 160478009 -82186344 + MIR SINE MIR 113 177 -85 * 586 363 96 14 chr1 160478003 160478731 -82185622 - L2 LINE L2 -2 3311 2512 201 238 0 0 chr1 160478774 160478816 -82185537 + MIR SINE MIR 217 258 -4 245 360 13 0 chr1 160478903 160478978 -82185375 + MIR SINE MIR 10 85 -177 720 190 6 19 chr1 160479857 160480015 -82184338 - L1ME1 LINE L1 -5 6161 6006 458 259 132 17 chr1 160480045 160480219 -82184134 - L2 LINE L2 -778 2536 2343 1639 158 15 4 chr1 160480603 160480868 -82183485 + Tigger4(Zombi) DNA MER2_type 1 268 -2463 1383 112 9 14 chr1 160480870 160481093 -82183260 + Tigger4(Zombi) DNA MER2_type 2510 2731 0 640 282 60 60 chr1 160481169 160481417 -82182936 - MIR SINE MIR 0 262 15 253 247 19 13 chr1 160481822 160481914 -82182439 + GA-rich Low_complexity Low_complexity 1 92 0 24 53 0 0 chr1 160481983 160482021 -82182332 + AT_rich Low_complexity Low_complexity 1 38 0 3504 38 2 0 chr1 160482049 160482474 -82181879 + L1PA4 LINE L1 5730 6155 0 183 80 0 0 chr1 160482542 160482567 -82181786 + (CTTTG)n Simple_repeat Simple_repeat 5 29 0 21 36 0 0 chr1 160482662 160482690 -82181663 + AT_rich Low_complexity Low_complexity 1 28 0 325 309 112 13 chr1 160482818 160483060 -82181293 - L1MC4a LINE L1 -259 5862 5591 426 85 0 0 chr1 160483060 160483119 -82181234 + (TA)n Simple_repeat Simple_repeat 1 59 0 325 309 112 13 chr1 160483119 160483215 -82181138 - L1MC4a LINE L1 -530 5591 5506 270 0 0 0 chr1 160484332 160484362 -82179991 + (TG)n Simple_repeat Simple_repeat 1 30 0 243 378 8 17 chr1 160484773 160484892 -82179461 + MIR SINE MIR 145 262 0 559 254 243 0 chr1 160484896 160485081 -82179272 + MIR SINE MIR 33 262 0 181 293 57 85 chr1 160486372 160486478 -82177875 - L3 LINE CR1 -1122 455 353 884 301 77 23 chr1 160486688 160487076 -82177277 + MLT1I LTR MaLR 1 409 0 980 289 134 13 chr1 160487434 160488028 -82176325 + L2 LINE L2 2635 3292 -21 23 0 0 0 chr1 160488289 160488312 -82176041 + AT_rich Low_complexity Low_complexity 1 23 0 350 368 0 0 chr1 160488515 160488632 -82175721 - MIR3 SINE MIR -78 130 14 312 27 0 0 chr1 160488988 160489025 -82175328 + (TG)n Simple_repeat Simple_repeat 2 38 0 216 262 33 16 chr1 160489565 160489626 -82174727 - L3 LINE CR1 -3 1574 1513 239 194 0 97 chr1 160489676 160489748 -82174605 - L3 LINE CR1 -187 1390 1326 300 347 45 78 chr1 160489756 160490001 -82174352 - L2 LINE L2 -12 3260 3024 441 290 113 11 chr1 160490418 160490604 -82173749 + MLT1L LTR MaLR 403 607 -8 274 277 123 8 chr1 160490613 160490743 -82173610 - L3 LINE CR1 -1120 457 313 196 304 0 98 chr1 160490810 160490902 -82173451 - L2 LINE L2 -4 3268 3186 305 260 252 0 chr1 160491001 160491124 -82173229 - MIR SINE MIR -24 238 85 245 300 33 0 chr1 160491397 160491457 -82172896 - L2 LINE L2 0 3313 3252 209 321 151 38 chr1 160491521 160491680 -82172673 - MIR SINE MIR 0 262 86 246 327 127 0 chr1 160492110 160492220 -82172133 - MIR SINE MIR -121 141 18 300 53 0 0 chr1 160492633 160492671 -82171682 + (T)n Simple_repeat Simple_repeat 1 38 0 461 282 261 0 chr1 160493232 160493427 -82170926 + MIR SINE MIR 7 252 -10 218 167 0 0 chr1 160493440 160493476 -82170877 + (TTG)n Simple_repeat Simple_repeat 3 38 0 352 195 86 70 chr1 160494520 160494648 -82169705 - MLT1H LTR MaLR -18 531 402 433 264 54 75 chr1 160494677 160494916 -82169437 - MLT1H LTR MaLR -231 318 85 279 0 0 0 chr1 160495313 160495344 -82169009 + (CA)n Simple_repeat Simple_repeat 2 32 0 280 343 147 14 chr1 160496004 160496147 -82168206 + L2 LINE L2 3106 3267 -5 2188 106 0 16 chr1 160496424 160496727 -82167626 + AluY SINE Alu 1 298 -13 200 40 0 0 chr1 160496727 160496752 -82167601 + (TA)n Simple_repeat Simple_repeat 2 26 0 260 137 20 0 chr1 160496752 160496803 -82167550 + (CA)n Simple_repeat Simple_repeat 2 53 0 427 277 57 21 chr1 160497979 160498120 -82166233 + L2 LINE L2 3160 3305 -8 199 296 148 34 chr1 160498274 160498362 -82165991 + L2 LINE L2 3167 3264 -8 321 310 59 48 chr1 160498430 160498617 -82165736 - MIR SINE MIR -45 217 29 286 35 0 121 chr1 160498618 160498676 -82165677 + L1MA7 LINE L1 6237 6287 -4 333 0 0 0 chr1 160499718 160499755 -82164598 + (CA)n Simple_repeat Simple_repeat 1 37 0 535 303 111 5 chr1 160499885 160500093 -82164260 - MIR SINE MIR -13 249 20 314 366 20 59 chr1 160500201 160500354 -82163999 + MIR3 SINE MIR 30 176 -32 329 307 28 6 chr1 160500827 160501026 -82163327 + L1MDa LINE L1 1752 2052 -849 1535 321 55 17 chr1 160501143 160501614 -82162739 + MER115 DNA AcHobo 108 596 -97 451 259 64 28 chr1 160502503 160502862 -82161491 + L1MDa LINE L1 2514 2885 -3655 2132 94 9 9 chr1 160503155 160503474 -82160879 + L1MA2 LINE L1 5263 5581 -724 1768 62 17 0 chr1 160503474 160503687 -82160666 + L1MA1 LINE L1 6058 6277 -25 366 42 0 0 chr1 160503687 160503735 -82160618 + (CA)n Simple_repeat Simple_repeat 2 49 0 1768 62 17 0 chr1 160503735 160503762 -82160591 + L1MA1 LINE L1 6277 6302 0 4341 106 36 20 chr1 160503766 160503784 -82160569 + L1MA2 LINE L1 5593 5609 -695 2085 117 0 3 chr1 160503784 160504066 -82160287 + AluSx SINE Alu 4 284 -28 738 32 0 0 chr1 160504066 160504159 -82160194 + (CTAAA)n Simple_repeat Simple_repeat 3 95 0 4341 106 36 20 chr1 160504159 160504840 -82159513 + L1MA2 LINE L1 5608 6304 0 351 287 8 47 chr1 160504896 160505025 -82159328 + L1MDa LINE L1 3275 3398 -3142 912 266 154 48 chr1 160505092 160505499 -82158854 - HAL1b LINE L1 -151 1197 835 2445 77 0 0 chr1 160505499 160505796 -82158557 - AluSg SINE Alu -13 297 1 912 266 154 48 chr1 160505796 160506396 -82157957 - HAL1b LINE L1 -513 835 83 246 128 0 0 chr1 160506718 160506757 -82157596 + (TG)n Simple_repeat Simple_repeat 2 40 0 864 254 88 17 chr1 160508738 160508914 -82155439 + L1MDa LINE L1 4466 4628 -1912 1768 54 0 0 chr1 160508914 160509117 -82155236 + AluY SINE Alu 1 203 -108 864 254 88 17 chr1 160509117 160509492 -82154861 + L1MDa LINE L1 4628 5062 -1478 1078 234 82 22 chr1 160509500 160509918 -82154435 + L1MDa LINE L1 5189 5618 -922 321 134 57 19 chr1 160509920 160510077 -82154276 + (TA)n Simple_repeat Simple_repeat 2 164 0 263 233 163 0 chr1 160510093 160510179 -82154174 + L1M4 LINE L1 4680 4779 -1367 262 333 36 0 chr1 160510227 160510311 -82154042 + MIR SINE MIR 161 247 -15 2463 48 0 29 chr1 160510568 160510879 -82153474 - AluY SINE Alu -9 302 1 252 149 0 0 chr1 160510954 160511001 -82153352 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 258 296 12 0 chr1 160511361 160511442 -82152911 - Charlie1 DNA MER1_type -1043 1718 1637 393 304 35 41 chr1 160511822 160511993 -82152360 + L2 LINE L2 3144 3313 0 1519 241 59 33 chr1 160512251 160513139 -82151214 + L1MC5 LINE L1 7089 7901 -60 844 277 32 0 chr1 160513207 160513456 -82150897 + MIR SINE MIR 3 259 -3 282 244 58 58 chr1 160513516 160513602 -82150751 + MER117 DNA MER1_type 28 113 -84 307 294 76 25 chr1 160513716 160513835 -82150518 - MIR3 SINE MIR -48 160 36 3568 211 68 28 chr1 160514859 160515733 -82148620 - Charlie1 DNA MER1_type -432 2329 1421 490 247 0 0 chr1 160515713 160515806 -82148547 - Charlie1 DNA MER1_type -2668 93 1 * 22 35 0 0 chr1 160516073 160516102 -82148251 + AT_rich Low_complexity Low_complexity 1 29 0 1447 279 49 92 chr1 160517418 160517867 -82146486 + MER21B LTR ERV1 1 407 -456 2463 60 0 0 chr1 160517867 160518165 -82146188 - AluY SINE Alu -13 298 1 1447 279 49 92 chr1 160518165 160518456 -82145897 + MER21B LTR ERV1 407 709 -154 252 177 25 13 chr1 160518778 160518857 -82145496 + (TATG)n Simple_repeat Simple_repeat 3 82 0 531 69 0 0 chr1 160520997 160521069 -82143284 + (GGGAA)n Simple_repeat Simple_repeat 2 73 0 360 176 29 140 chr1 160521194 160521330 -82143023 - MLT1H LTR MaLR -3 546 426 411 285 106 46 chr1 160521494 160521573 -82142780 - L1ME4a LINE L1 -207 5914 5841 1096 191 107 61 chr1 160521573 160521919 -82142434 + MLT1A1 LTR MaLR 3 364 -1 411 285 106 46 chr1 160521919 160522340 -82142013 - L1ME4a LINE L1 -280 5841 5384 1038 338 171 7 chr1 160522819 160523289 -82141064 + L2 LINE L2 2279 2895 -377 2428 90 48 25 chr1 160523289 160523645 -82140708 + THE1B LTR MaLR 1 364 0 1038 338 171 7 chr1 160523645 160523844 -82140509 + L2 LINE L2 2895 3060 -212 9490 205 46 29 chr1 160524339 160526082 -82138271 + L1M1 LINE L1 2137 3850 -3715 2088 131 0 0 chr1 160526082 160526412 -82137941 + AluSx SINE Alu 1 330 0 9490 205 46 29 chr1 160526412 160527552 -82136801 + L1M1 LINE L1 3850 4970 -2595 231 36 0 0 chr1 160527552 160527580 -82136773 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9490 205 46 29 chr1 160527580 160527684 -82136669 + L1M1 LINE L1 4970 5071 -2494 1558 75 24 0 chr1 160527684 160527897 -82136456 + L1PA13 LINE L1 5946 6163 0 9490 205 46 29 chr1 160527897 160528262 -82136091 + L1M1 LINE L1 5071 5429 -2136 1942 151 50 34 chr1 160528262 160528620 -82135733 + THE1B LTR MaLR 1 364 0 9490 205 46 29 chr1 160528620 160528857 -82135496 + L1M1 LINE L1 5429 5809 -1756 1619 165 8 80 chr1 160528857 160529208 -82135145 + MER44D DNA MER2_type 14 609 0 2880 138 32 30 chr1 160529627 160530128 -82134225 + L1PA16 LINE L1 5656 6157 -9 464 261 0 0 chr1 160530973 160531092 -82133261 + MER103 DNA DNA 3 121 -45 258 227 0 30 chr1 160531490 160531556 -82132797 + (TATG)n Simple_repeat Simple_repeat 3 66 0 284 295 171 32 chr1 160531851 160532102 -82132251 - MLT1J LTR MaLR -2 509 224 267 288 15 0 chr1 160532150 160532216 -82132137 - MLT1J LTR MaLR -410 101 35 1500 124 164 37 chr1 160534573 160534871 -82129482 - MSTA LTR MaLR -92 336 1 7468 180 95 23 chr1 160534872 160536415 -82127938 - MSTA-int LTR MaLR -1 1650 1 1102 132 128 15 chr1 160536415 160536619 -82127734 - MSTA LTR MaLR 0 428 202 309 261 27 54 chr1 160536619 160536666 -82127687 + L1MB7 LINE L1 1557 1604 -4780 2293 91 3 3 chr1 160536666 160536964 -82127389 + AluY SINE Alu 1 298 -13 309 261 27 54 chr1 160536964 160537027 -82127326 + L1MB7 LINE L1 1604 1664 -4720 275 71 24 0 chr1 160537027 160537069 -82127284 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 312 287 83 67 chr1 160537075 160537510 -82126843 + L1MB7 LINE L1 1796 2237 -4326 * 2166 204 38 49 chr1 160537500 160538133 -82126220 + L1MB7 LINE L1 4933 5558 -824 1270 151 85 30 chr1 160538126 160538397 -82125956 + L1MB7 LINE L1 6127 6412 -8 * 604 298 64 57 chr1 160538390 160538810 -82125543 - L1ME LINE L1 -440 5722 5300 * 2186 101 37 0 chr1 160539225 160539521 -82124832 + AluSc SINE Alu 3 309 0 1914 225 95 15 chr1 160539643 160540118 -82124235 - MLT2B1 LTR ERVL -2 518 6 28773 166 20 19 chr1 160540120 160540237 -82124116 - ERVL-B1 LTR ERVL 0 5764 5649 3388 69 36 13 chr1 160540237 160540715 -82123638 - LTR15 LTR ERV1 -4 489 1 28773 166 20 19 chr1 160540715 160541024 -82123329 - ERVL-B1 LTR ERVL -115 5649 5342 2817 0 0 7 chr1 160541024 160541331 -82123022 - AluYa5 SINE Alu -6 305 1 28773 166 20 19 chr1 160541331 160545875 -82118478 - ERVL-B1 LTR ERVL -422 5342 790 378 0 0 0 chr1 160545877 160545919 -82118434 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr1 160546970 160546992 -82117361 + AT_rich Low_complexity Low_complexity 1 22 0 913 269 130 32 chr1 160547003 160547527 -82116826 + HAL1b LINE L1 244 818 -530 180 0 0 0 chr1 160547891 160547911 -82116442 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1588 238 60 71 chr1 160548266 160548927 -82115426 + MLT1E1 LTR MaLR 1 654 0 359 293 75 41 chr1 160549175 160549707 -82114646 + L1M4c LINE L1 2886 3435 -2947 2364 166 27 20 chr1 160549724 160550187 -82114166 + L1MD3 LINE L1 6124 6344 0 23 54 0 0 chr1 160550355 160550392 -82113961 + AT_rich Low_complexity Low_complexity 1 37 0 288 313 47 21 chr1 160550764 160550956 -82113397 - L1 LINE L1 -2311 3835 3639 516 361 80 44 chr1 160552036 160552399 -82111954 - L2 LINE L2 0 3272 2897 1218 291 63 30 chr1 160552416 160552811 -82111542 - LTR16A LTR ERVL -12 438 31 696 263 98 0 chr1 160553461 160553697 -82110656 - MIR SINE MIR -3 259 1 211 229 0 0 chr1 160554403 160554451 -82109902 + T-rich Low_complexity Low_complexity 6 53 0 7122 31 0 0 chr1 160555430 160556264 -82108089 + L1PA5 LINE L1 5314 6147 -7 23 0 0 0 chr1 160556264 160556287 -82108066 + AT_rich Low_complexity Low_complexity 1 23 0 424 317 61 9 chr1 160556473 160556703 -82107650 - L1M4 LINE L1 -1433 4713 4472 926 212 111 33 chr1 160556758 160557065 -82107288 - L1M4 LINE L1 -898 5248 4918 252 0 0 0 chr1 160557237 160557265 -82107088 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 590 196 19 6 chr1 160557265 160557423 -82106930 + GA-rich Low_complexity Low_complexity 1 160 0 579 318 77 20 chr1 160557468 160557817 -82106536 - HAL1 LINE L1 -922 1585 1217 2092 160 11 64 chr1 160557885 160558336 -82106017 - L1M2 LINE L1 -512 5779 5353 * 6191 158 9 22 chr1 160558330 160560460 -82103893 - L1PB1 LINE L1 -4 6147 4054 2933 205 29 16 chr1 160560455 160561153 -82103200 - L1M2 LINE L1 -774 5372 4666 * 2509 55 0 3 chr1 160561305 160561616 -82102737 - AluY SINE Alu 0 311 2 253 226 0 0 chr1 160562262 160562315 -82102038 - HsTC2 DNA Tc2 -1816 82 30 2391 60 0 0 chr1 160562602 160562907 -82101446 + AluY SINE Alu 1 305 0 1697 189 0 20 chr1 160564136 160564437 -82099916 - AluJo SINE Alu -17 295 1 22 0 0 0 chr1 160565038 160565060 -82099293 + AT_rich Low_complexity Low_complexity 1 22 0 5443 115 53 3 chr1 160566270 160567469 -82096884 + L1PA13 LINE L1 4925 6159 -4 356 310 144 44 chr1 160567557 160567786 -82096567 - MIR SINE MIR -3 259 8 22 0 0 0 chr1 160568440 160568462 -82095891 + AT_rich Low_complexity Low_complexity 1 22 0 425 330 121 22 chr1 160569317 160569780 -82094573 - L1MC4a LINE L1 -1865 5943 5435 980 181 0 0 chr1 160572110 160572276 -82092077 + FRAM SINE Alu 1 166 0 22 0 0 0 chr1 160572276 160572298 -82092055 + AT_rich Low_complexity Low_complexity 1 22 0 1634 182 53 3 chr1 160572522 160572863 -82091490 + L1MB5 LINE L1 5567 5924 -250 214 200 36 18 chr1 160572865 160572920 -82091433 + (CTATT)n Simple_repeat Simple_repeat 4 59 0 270 0 0 0 chr1 160574211 160574241 -82090112 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 354 23 0 0 chr1 160574240 160574283 -82090070 + (GA)n Simple_repeat Simple_repeat 1 43 0 352 249 33 61 chr1 160574953 160575107 -82089246 - MIR SINE MIR -1 261 114 725 240 6 29 chr1 160575728 160575903 -82088450 + L1MEc LINE L1 577 747 -5649 4734 249 99 50 chr1 160575945 160576037 -82088316 + L1ME1 LINE L1 38 124 -6091 2299 87 0 7 chr1 160576037 160576337 -82088016 + AluY SINE Alu 1 298 -13 279 0 0 0 chr1 160576338 160576369 -82087984 + (CA)n Simple_repeat Simple_repeat 2 32 0 4734 249 99 50 chr1 160576369 160577102 -82087251 + L1ME1 LINE L1 124 819 -5396 1999 112 4 0 chr1 160577102 160577369 -82086984 + AluSx SINE Alu 1 268 -44 4734 249 99 50 chr1 160577369 160578939 -82085414 + L1ME1 LINE L1 819 2513 -3702 1325 135 151 8 chr1 160578939 160579191 -82085162 - L1PB4 LINE L1 -8 6148 5861 8406 215 58 87 chr1 160579191 160579973 -82084380 - L1PA12 LINE L1 -3557 4027 3224 1420 127 0 0 chr1 160579973 160580162 -82084191 + AluSx SINE Alu 1 189 -123 8406 215 58 87 chr1 160580162 160582519 -82081834 - L1PA12 LINE L1 -4360 3224 813 1198 178 21 13 chr1 160582520 160582756 -82081597 + Tigger1 DNA MER2_type 2181 2418 0 381 181 11 64 chr1 160582757 160582851 -82081502 + L1ME1 LINE L1 4104 4192 -2023 2663 237 69 36 chr1 160582852 160583291 -82081062 + L1ME1 LINE L1 4875 5298 -937 7511 116 15 10 chr1 160583291 160585264 -82079089 + L1PA8A LINE L1 4179 6131 0 2663 237 69 36 chr1 160585264 160586103 -82078250 + L1ME1 LINE L1 5298 6189 -46 456 259 12 47 chr1 160585992 160586116 -82078237 + L1MA10 LINE L1 6238 6356 -47 * 1649 198 0 16 chr1 160586116 160586429 -82077924 + AluJb SINE Alu 1 308 -4 456 259 12 47 chr1 160586429 160586474 -82077879 + L1MA10 LINE L1 6356 6401 -2 21 36 0 0 chr1 160587468 160587496 -82076857 + AT_rich Low_complexity Low_complexity 1 28 0 323 247 52 0 chr1 160589864 160589961 -82074392 - ORSL DNA AcHobo -157 118 17 1821 147 3 33 chr1 160590359 160590665 -82073688 - AluJo SINE Alu -15 297 1 2020 238 21 9 chr1 160590880 160591413 -82072940 - MER45B DNA AcHobo -1 1039 501 792 240 158 12 chr1 160591473 160591719 -82072634 - MER45B DNA AcHobo -758 282 1 340 285 72 52 chr1 160594190 160594383 -82069970 + MIR SINE MIR 20 216 -46 294 333 54 0 chr1 160595113 160595206 -82069147 + MIR SINE MIR 30 127 -81 225 157 0 84 chr1 160595206 160595289 -82069064 + T-rich Low_complexity Low_complexity 5 80 0 929 272 73 22 chr1 160595950 160596408 -82067945 - L2 LINE L2 0 3313 2779 441 214 0 26 chr1 160596556 160596673 -82067680 + Ricksha DNA DNA 9 122 -1132 * 6255 158 31 24 chr1 160596652 160597982 -82066371 + Ricksha DNA DNA 1710 3106 -145 1821 97 74 10 chr1 160597982 160598281 -82066072 - L1MA1 LINE L1 -5 6297 5980 6255 158 31 24 chr1 160598281 160598419 -82065934 + Ricksha DNA DNA 3106 3241 -10 644 168 181 13 chr1 160599618 160599773 -82064580 + MER5A DNA MER1_type 9 189 0 23 33 0 0 chr1 160601037 160601067 -82063286 + AT_rich Low_complexity Low_complexity 1 30 0 5917 104 0 3 chr1 160601389 160602535 -82061818 - L1PB1 LINE L1 -1 6866 5740 10513 189 80 6 chr1 160602535 160606992 -82057361 - L1PB1 LINE L1 -2070 4792 6 2998 182 32 18 chr1 160607011 160607291 -82057062 - L1 LINE L1 -1309 4725 4450 1770 183 3 20 chr1 160607291 160607591 -82056762 - AluSx SINE Alu -17 295 1 2998 182 32 18 chr1 160607591 160608020 -82056333 - L1 LINE L1 -1584 4450 4006 2111 264 53 58 chr1 160608031 160609745 -82054608 - L1 LINE L1 -4178 1857 350 1284 289 62 10 chr1 160609798 160610284 -82054069 - L1M3a LINE L1 -5218 737 48 21 57 0 0 chr1 160610461 160610496 -82053857 + AT_rich Low_complexity Low_complexity 1 35 0 937 185 0 13 chr1 160610844 160611001 -82053352 + FAM SINE Alu 15 169 -16 494 182 45 18 chr1 160611001 160611111 -82053242 + L1MC4a LINE L1 5821 5933 -1875 35 63 0 0 chr1 160611205 160611268 -82053085 + AT_rich Low_complexity Low_complexity 1 63 0 324 224 121 26 chr1 160611276 160611392 -82052961 + L1MC4a LINE L1 5946 6072 -1736 1026 271 80 53 chr1 160611445 160612172 -82052181 + L1MC4 LINE L1 6168 7032 -856 6633 67 3 21 chr1 160612172 160613287 -82051066 - L1PA7 LINE L1 -3 6151 5030 1026 271 80 53 chr1 160613287 160613597 -82050756 + L1MC4 LINE L1 7032 7332 -556 394 266 119 69 chr1 160613958 160614495 -82049858 - L1MCa LINE L1 -2807 3619 1229 249 254 0 0 chr1 160614590 160614657 -82049696 + CT-rich Low_complexity Low_complexity 2 68 0 2462 69 0 3 chr1 160614720 160615023 -82049330 - AluY SINE Alu -9 302 1 1914 144 42 33 chr1 160615432 160615766 -82048587 + MER1B DNA MER1_type 1 337 0 284 371 0 0 chr1 160615864 160615969 -82048384 + L2 LINE L2 3137 3241 -31 354 61 0 0 chr1 160616091 160616140 -82048213 + (CA)n Simple_repeat Simple_repeat 2 50 0 914 184 45 0 chr1 160616997 160617176 -82047177 + MER5A DNA MER1_type 1 187 -2 1258 228 146 0 chr1 160617908 160618285 -82046068 + MER63B DNA MER1_type 2 433 -3 439 329 12 37 chr1 160618815 160618979 -82045374 + MIR SINE MIR 30 189 -73 6029 179 28 25 chr1 160619355 160621117 -82043236 + L1P3 LINE L1 3 1785 -4666 * 11615 143 8 7 chr1 160621115 160621588 -82042765 + L1P3 LINE L1 2884 3355 -3106 2189 107 7 0 chr1 160621588 160621878 -82042475 + AluSg1 SINE Alu 1 292 -17 11615 143 8 7 chr1 160621878 160623480 -82040873 + L1P3 LINE L1 3355 4961 -1500 551 176 17 8 chr1 160623604 160623723 -82040630 - LTR29 LTR ERV1 -173 449 330 622 215 76 13 chr1 160623834 160623992 -82040361 + MER4E LTR ERV1 1 168 -611 1274 217 19 64 chr1 160623996 160624370 -82039983 + MER4D LTR ERV1 544 900 -3 752 228 112 0 chr1 160624380 160624586 -82039767 - LTR48B LTR ERV1 -415 229 1 442 234 156 21 chr1 160624763 160624955 -82039398 - Charlie2 DNA MER1_type -2560 222 5 240 35 0 0 chr1 160625558 160625587 -82038766 + (TTA)n Simple_repeat Simple_repeat 2 30 0 13304 86 10 9 chr1 160625588 160628232 -82036121 - L1PA7 LINE L1 -17 6452 3792 2949 109 7 0 chr1 160628235 160628655 -82035698 - L1PA7 LINE L1 -6028 433 11 3490 138 38 45 chr1 160628741 160629574 -82034779 + MER4D LTR ERV1 1 755 -11 224 217 0 0 chr1 160629600 160629646 -82034707 + CT-rich Low_complexity Low_complexity 1 46 0 267 263 68 25 chr1 160629819 160629937 -82034416 - L2 LINE L2 -534 2780 2658 306 246 64 30 chr1 160630844 160630986 -82033367 + L1MEd LINE L1 1140 1277 -4852 198 0 0 0 chr1 160631616 160631638 -82032715 + (TCTCTG)n Simple_repeat Simple_repeat 3 24 0 24 0 0 0 chr1 160632029 160632053 -82032300 + AT_rich Low_complexity Low_complexity 1 24 0 245 287 28 84 chr1 160632482 160632625 -82031728 - MIR SINE MIR -16 246 112 204 264 0 19 chr1 160633787 160633840 -82030513 + L2 LINE L2 3227 3278 -35 2790 75 16 0 chr1 160634646 160635033 -82029320 + L1MA2 LINE L1 5912 6304 0 31 0 0 0 chr1 160635033 160635064 -82029289 + AT_rich Low_complexity Low_complexity 1 31 0 396 196 140 0 chr1 160635336 160635443 -82028910 - LTR67 LTR ERVL -4 553 432 1541 74 14 0 chr1 160635766 160635981 -82028372 - L1PA14 LINE L1 0 7599 7382 2239 88 0 53 chr1 160636361 160636679 -82027674 + AluY SINE Alu 1 301 -10 15134 162 38 34 chr1 160638651 160645265 -82019088 - L1PA14 LINE L1 -202 7397 762 329 240 13 0 chr1 160645650 160645725 -82018628 + L1MC4 LINE L1 6628 6703 -1339 2554 62 0 0 chr1 160645814 160646118 -82018235 + AluY SINE Alu 1 304 -7 260 294 79 0 chr1 160647156 160647263 -82017090 - MIR SINE MIR -66 142 65 647 113 113 42 chr1 160648214 160648356 -82015997 + L1MA9 LINE L1 6156 6307 -5 333 310 69 0 chr1 160648431 160648547 -82015806 + L1MC4 LINE L1 6580 6703 -1339 * 350 321 0 0 chr1 160648468 160648574 -82015779 - L1MC4 LINE L1 -1322 6720 6615 354 80 0 0 chr1 160649453 160649503 -82014850 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 448 391 72 38 chr1 160649505 160649950 -82014403 - L2 LINE L2 -5 3267 2808 41628 41 3 6 chr1 160650022 160656182 -82008171 + L1PA4 LINE L1 16 6152 -3 30 0 0 0 chr1 160656240 160656270 -82008083 + AT_rich Low_complexity Low_complexity 1 30 0 682 137 53 0 chr1 160656301 160656432 -82007921 - MER39B LTR ERV1 -4 649 512 261 119 0 0 chr1 160656443 160656485 -82007868 + MER39B LTR ERV1 417 458 -195 2228 121 18 21 chr1 160656485 160656865 -82007488 - MER39B LTR ERV1 -274 379 1 279 221 221 21 chr1 160657178 160657318 -82007035 - MLT1L LTR MaLR -341 170 3 292 353 39 39 chr1 160657350 160657554 -82006799 - L2 LINE L2 -556 2758 2555 325 193 0 0 chr1 160658199 160658256 -82006097 - Tigger3b DNA MER2_type -3 1228 1172 * 5395 113 30 13 chr1 160658255 160659174 -82005179 - Tigger3b DNA MER2_type -295 936 2 668 284 10 36 chr1 160659186 160659380 -82004973 - MIR SINE MIR -73 189 1 23 33 0 0 chr1 160660136 160660166 -82004187 + AT_rich Low_complexity Low_complexity 1 30 0 352 251 262 49 chr1 160660433 160660799 -82003554 - MLT1J1 LTR MaLR 0 446 3 5146 173 64 16 chr1 160660891 160660984 -82003369 - L1MA9 LINE L1 0 6312 6225 5032 78 8 1 chr1 160660984 160661640 -82002713 + PABL_A LTR ERV1 1 660 0 5146 173 64 16 chr1 160661640 160663292 -82001061 - L1MA9 LINE L1 -87 6225 4469 1507 114 0 0 chr1 160663293 160663494 -82000859 - AluSg/x SINE Alu -8 302 102 2128 191 21 9 chr1 160663501 160663966 -82000387 - L1MA9 LINE L1 -1743 4403 3933 4339 87 53 0 chr1 160664358 160664716 -81999637 - L1PB1 LINE L1 0 6151 5745 252 0 0 0 chr1 160664716 160664744 -81999609 + (TG)n Simple_repeat Simple_repeat 2 29 0 4339 87 53 0 chr1 160664744 160665007 -81999346 - L1PB1 LINE L1 -406 5745 5497 22 0 0 0 chr1 160665695 160665717 -81998636 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 160665796 160665817 -81998536 + AT_rich Low_complexity Low_complexity 1 21 0 449 208 32 19 chr1 160666320 160666364 -81997989 - Charlie5 DNA MER1_type 0 2624 2582 1818 145 25 3 chr1 160666364 160666646 -81997707 + AluJo SINE Alu 1 288 -24 449 208 32 19 chr1 160666646 160666755 -81997598 - Charlie5 DNA MER1_type -42 2582 2469 377 177 0 0 chr1 160666799 160666861 -81997492 + MER63 DNA MER1_type 684 745 -315 219 265 12 72 chr1 160666864 160666947 -81997406 - MIR SINE MIR 0 262 185 217 159 23 0 chr1 160667621 160667665 -81996688 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 21 0 0 0 chr1 160667896 160667917 -81996436 + AT_rich Low_complexity Low_complexity 1 21 0 384 244 12 0 chr1 160668410 160668496 -81995857 - MER5A DNA MER1_type -83 106 20 225 323 42 0 chr1 160668520 160668616 -81995737 - MIR SINE MIR -12 250 151 1430 180 45 58 chr1 160669074 160669451 -81994902 - MLT1A2 LTR MaLR -2 372 1 1438 131 31 0 chr1 160669708 160669930 -81994423 - MER30 DNA MER1_type -1 229 1 789 206 22 17 chr1 160670070 160670250 -81994103 + MIR SINE MIR 3 183 -79 202 226 57 19 chr1 160670246 160670299 -81994054 - L2 LINE L2 -292 2980 2926 * 900 226 23 28 chr1 160670355 160670572 -81993781 - MER20 DNA MER1_type 0 219 4 423 207 26 9 chr1 160670694 160670840 -81993513 + L1ME1 LINE L1 6053 6333 -1 226 94 0 75 chr1 160671504 160671557 -81992796 + (TTTTTA)n Simple_repeat Simple_repeat 4 52 0 1991 94 3 10 chr1 160671583 160671871 -81992482 - L1MA1 LINE L1 -9 6293 6008 313 312 0 71 chr1 160672042 160672094 -81992259 + MER5A DNA MER1_type 47 101 -88 2529 154 24 2 chr1 160672094 160672517 -81991836 + MSTB1 LTR MaLR 1 432 0 313 312 0 71 chr1 160672517 160672618 -81991735 + MER5A DNA MER1_type 101 189 0 250 312 112 40 chr1 160672618 160672726 -81991627 - L3 LINE CR1 -48 1529 1413 206 211 58 19 chr1 160673365 160673417 -81990936 - MER91A DNA MER1_type -11 185 132 379 320 40 16 chr1 160673488 160673613 -81990740 - MER91A DNA MER1_type -24 172 45 232 229 127 119 chr1 160673726 160673970 -81990383 + L2 LINE L2 2683 2928 -386 1718 171 19 23 chr1 160674612 160674922 -81989431 + AluJo SINE Alu 3 311 -1 200 290 30 80 chr1 160676088 160676188 -81988165 + L2 LINE L2 3164 3258 -14 214 286 12 24 chr1 160676493 160676577 -81987776 + MIR SINE MIR 180 262 0 21 0 0 0 chr1 160679266 160679287 -81985066 + AT_rich Low_complexity Low_complexity 1 21 0 351 60 0 0 chr1 160679470 160679520 -81984833 + (TG)n Simple_repeat Simple_repeat 2 51 0 207 125 0 0 chr1 160679522 160679562 -81984791 + (GA)n Simple_repeat Simple_repeat 1 40 0 231 88 0 0 chr1 160679654 160679688 -81984665 + (TGG)n Simple_repeat Simple_repeat 2 35 0 347 303 18 9 chr1 160680076 160680185 -81984168 + MIR3 SINE MIR 98 207 -1 261 289 174 16 chr1 160681106 160681227 -81983126 - MIR3 SINE MIR -5 203 64 224 271 21 0 chr1 160681291 160681339 -81983014 - L2 LINE L2 -23 3290 3242 212 361 8 33 chr1 160681596 160681718 -81982635 - L2 LINE L2 -413 2901 2783 282 160 0 0 chr1 160682317 160682367 -81981986 + (TA)n Simple_repeat Simple_repeat 1 50 0 186 289 184 18 chr1 160682730 160682877 -81981476 + MIR SINE MIR 16 191 -71 221 291 171 34 chr1 160684106 160684223 -81980130 - MIR3 SINE MIR -67 141 9 215 287 0 85 chr1 160684520 160684614 -81979739 + MIR3 SINE MIR 99 184 -24 1639 206 61 30 chr1 160684693 160685134 -81979219 - MLT1C LTR MaLR -6 461 7 379 322 89 48 chr1 160685148 160685294 -81979059 - L2 LINE L2 0 3272 3121 824 108 0 0 chr1 160685644 160685764 -81978589 - L1PA15 LINE L1 -6 6159 6040 843 81 0 0 chr1 160685774 160685885 -81978468 - AluY SINE Alu -10 301 191 272 250 60 0 chr1 160686465 160686549 -81977804 + L1M4 LINE L1 4771 4859 -1287 5056 79 22 21 chr1 160686556 160687275 -81977078 - L1PA11 LINE L1 0 6174 5455 407 287 70 6 chr1 160689352 160689509 -81974844 + MIR SINE MIR 96 262 0 1641 164 47 40 chr1 160689513 160689812 -81974541 - AluJb SINE Alu -11 301 1 278 393 30 22 chr1 160690022 160690157 -81974196 + L2 LINE L2 3125 3260 -12 345 276 33 92 chr1 160690358 160690510 -81973843 + MER5A DNA MER1_type 47 189 0 239 260 14 41 chr1 160690894 160690967 -81973386 + MIR3 SINE MIR 97 167 -41 544 286 31 49 chr1 160691469 160691693 -81972660 - MIR SINE MIR 0 262 43 2518 126 12 5 chr1 160691733 160692153 -81972200 - L1MC1 LINE L1 -223 6110 5688 1786 140 4 0 chr1 160692261 160692518 -81971835 - AluSx SINE Alu -54 258 1 273 305 126 50 chr1 160692519 160692762 -81971591 - MIR SINE MIR -11 251 1 273 313 108 23 chr1 160693452 160693628 -81970725 - MIR3 SINE MIR -9 199 9 1814 129 45 21 chr1 160694198 160694484 -81969869 - AluSx SINE Alu -18 294 2 1695 146 7 47 chr1 160695388 160695711 -81968642 + AluJb SINE Alu 1 312 0 304 231 115 0 chr1 160696099 160696203 -81968150 - MIR SINE MIR -30 232 117 593 96 0 0 chr1 160697340 160697423 -81966930 - Alu SINE Alu -8 303 221 395 317 0 10 chr1 160698133 160698237 -81966116 - MER91B DNA MER1_type 0 190 88 253 229 0 0 chr1 160699565 160699613 -81964740 - L2 LINE L2 -15 3298 3251 264 30 0 0 chr1 160699677 160699710 -81964643 + (TG)n Simple_repeat Simple_repeat 2 34 0 531 304 44 6 chr1 160700117 160700275 -81964078 + MIR3 SINE MIR 2 165 -43 234 339 63 26 chr1 160701091 160701280 -81963073 + L2 LINE L2 1968 2163 -1151 326 269 128 46 chr1 160701283 160701502 -81962851 + Charlie8 DNA MER1_type 1 237 -2180 649 283 60 20 chr1 160701749 160702000 -81962353 - MIR SINE MIR 0 262 2 204 298 64 11 chr1 160702000 160702091 -81962262 + L2 LINE L2 2294 2389 -925 21 36 0 0 chr1 160702419 160702447 -81961906 + AT_rich Low_complexity Low_complexity 1 28 0 187 204 37 93 chr1 160703432 160703486 -81960867 - L2 LINE L2 -12 3260 3210 27 0 0 0 chr1 160703662 160703689 -81960664 + AT_rich Low_complexity Low_complexity 1 27 0 277 323 24 48 chr1 160704345 160704469 -81959884 - L2 LINE L2 -211 3102 2982 775 234 107 86 chr1 160704501 160704933 -81959420 + ERVL-F LTR ERVL 5315 5755 -9 548 302 107 4 chr1 160704934 160705159 -81959194 + MLT2F LTR ERVL 1 248 -415 1607 216 73 35 chr1 160705222 160705704 -81958649 - MLT1D LTR MaLR -2 503 4 308 302 94 16 chr1 160705707 160705810 -81958543 + HAL1b LINE L1 432 526 -822 2214 87 3 16 chr1 160705810 160706119 -81958234 - AluY SINE Alu -6 305 1 308 302 94 16 chr1 160706119 160706207 -81958146 + HAL1b LINE L1 526 638 -710 209 283 33 17 chr1 160706471 160706531 -81957822 + L2 LINE L2 3002 3062 -210 194 246 16 49 chr1 160706664 160706725 -81957628 + L2 LINE L2 3214 3272 0 2540 110 21 0 chr1 160706822 160707194 -81957159 - L1PA15 LINE L1 -17 6148 5769 227 100 25 0 chr1 160707235 160707275 -81957078 - L1MB3 LINE L1 -11 6172 6132 4648 126 4 7 chr1 160707275 160708012 -81956341 - L1PA15 LINE L1 -8 6157 5423 209 265 10 71 chr1 160708998 160709096 -81955257 - L2 LINE L2 0 3272 3181 236 258 108 108 chr1 160709097 160709283 -81955070 + MIR SINE MIR 3 188 -74 1969 117 106 6 chr1 160709645 160709986 -81954367 + THE1C LTR MaLR 1 375 0 5794 113 54 8 chr1 160709986 160710901 -81953452 + THE1C-int LTR MaLR 1 957 -623 1795 129 21 12 chr1 160710897 160711217 -81953136 + THE1C-int LTR MaLR 1299 1580 0 * 2347 131 16 13 chr1 160711217 160711591 -81952762 + THE1C LTR MaLR 1 375 0 2958 264 60 28 chr1 160712487 160714235 -81950118 + L1M2a LINE L1 274 3205 -3962 511 248 14 0 chr1 160714237 160714378 -81949975 + L1M2a LINE L1 3629 3771 -3396 5934 119 25 12 chr1 160714385 160715551 -81948802 - L1MA4A LINE L1 -11 6292 5109 1043 259 22 3 chr1 160715548 160715915 -81948438 + L1M2a LINE L1 3756 4129 -3038 * 6060 101 12 3 chr1 160716253 160717162 -81947191 + L1PA8 LINE L1 5255 6171 -1 464 266 92 17 chr1 160717170 160717343 -81947010 - MIR SINE MIR -13 249 64 527 202 0 0 chr1 160717420 160717509 -81946844 + AluJ/FLAM SINE Alu 1 89 -223 * 707 167 0 0 chr1 160717507 160717627 -81946726 + AluJo/FRAM SINE Alu 187 306 -6 2486 150 90 23 chr1 160717987 160718553 -81945800 - L1MA9 LINE L1 0 6312 5709 22 0 0 0 chr1 160718561 160718583 -81945770 + AT_rich Low_complexity Low_complexity 1 22 0 194 125 0 25 chr1 160718647 160718687 -81945666 + (TA)n Simple_repeat Simple_repeat 1 39 0 270 0 0 0 chr1 160718690 160718720 -81945633 + (TG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr1 160720119 160720142 -81944211 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 160720332 160720360 -81943993 + AT_rich Low_complexity Low_complexity 1 28 0 186 191 0 0 chr1 160720575 160720617 -81943736 + (CA)n Simple_repeat Simple_repeat 2 43 0 2192 135 7 0 chr1 160720658 160720961 -81943392 - AluSx SINE Alu -7 305 1 23038 152 17 13 chr1 160721464 160723608 -81940745 - L1PA8A LINE L1 -4 6442 4308 1967 88 27 0 chr1 160723608 160723870 -81940483 - AluSg SINE Alu -15 295 27 23038 152 17 13 chr1 160723870 160727344 -81937009 - L1PA8A LINE L1 -2138 4308 776 5431 109 10 34 chr1 160727570 160728470 -81935883 - L1PA8A LINE L1 -4997 878 1 359 297 52 49 chr1 160728484 160728831 -81935522 + HAL1b LINE L1 94 441 -907 440 278 28 24 chr1 160728866 160729078 -81935275 + HAL1b LINE L1 435 647 -701 254 327 0 10 chr1 160729138 160729239 -81935114 + LTR33 LTR ERVL 32 131 -390 670 296 83 9 chr1 160729415 160729838 -81934515 + L1ME3A LINE L1 4617 5070 -1076 22 35 0 0 chr1 160729927 160729956 -81934397 + AT_rich Low_complexity Low_complexity 1 29 0 476 280 53 48 chr1 160729971 160730178 -81934175 + L1ME LINE L1 5283 5490 -752 2035 257 115 2 chr1 160730183 160731080 -81933273 + L1ME3A LINE L1 5150 6151 -19 469 321 41 22 chr1 160731116 160731434 -81932919 + L1ME LINE L1 5489 5812 -350 32 26 0 0 chr1 160731436 160731475 -81932878 + AT_rich Low_complexity Low_complexity 1 39 0 265 277 7 14 chr1 160731939 160732080 -81932273 + CT-rich Low_complexity Low_complexity 1 140 0 263 362 0 11 chr1 160732081 160732175 -81932178 + C-rich Low_complexity Low_complexity 4 96 0 206 246 35 18 chr1 160732183 160732297 -81932056 + CT-rich Low_complexity Low_complexity 4 119 0 244 310 14 0 chr1 160732301 160732372 -81931981 + C-rich Low_complexity Low_complexity 4 75 0 326 243 12 24 chr1 160732649 160732818 -81931535 + GA-rich Low_complexity Low_complexity 4 170 0 787 311 96 38 chr1 160732820 160733567 -81930786 + L1MC/D LINE L1 4415 5205 -941 538 340 23 4 chr1 160733740 160734002 -81930351 + L1MC/D LINE L1 5445 5711 -2097 192 231 0 0 chr1 160734597 160734636 -81929717 - L2 LINE L2 -1408 1906 1868 491 292 52 16 chr1 160734720 160735069 -81929284 - MLT1J LTR MaLR -24 487 86 1188 174 34 86 chr1 160735486 160735813 -81928540 + L1MA9 LINE L1 5841 6150 -162 619 176 0 0 chr1 160735853 160735972 -81928381 + L1MA9 LINE L1 6155 6273 -39 601 316 64 0 chr1 160736021 160736208 -81928145 + MIR SINE MIR 47 245 -17 2256 137 6 3 chr1 160736415 160736781 -81927572 - L1PB4 LINE L1 -1 6155 5789 14097 153 30 8 chr1 160736906 160737155 -81927198 - L1 LINE L1 -2756 4809 4567 2449 66 3 0 chr1 160737155 160737459 -81926894 - AluY SINE Alu -6 305 1 14097 153 30 8 chr1 160737459 160741303 -81923050 - L1 LINE L1 -2998 4567 618 1310 213 8 65 chr1 160741327 160741694 -81922659 + L1M1 LINE L1 82 427 -7138 1305 234 28 25 chr1 160741743 160741833 -81922520 - L1 LINE L1 -753 5393 5305 1792 180 16 3 chr1 160741833 160742139 -81922214 - AluJb SINE Alu 0 312 3 1305 234 28 25 chr1 160742139 160742483 -81921870 - L1 LINE L1 -841 5305 4958 429 148 46 0 chr1 160742490 160742598 -81921755 - L1 LINE L1 -1646 4500 4388 3470 195 33 42 chr1 160742700 160743424 -81920929 - L1 LINE L1 -1675 4471 3788 4495 116 7 1 chr1 160743424 160744096 -81920257 + L1PA10 LINE L1 5488 6163 -5 3470 195 33 42 chr1 160744096 160744612 -81919741 - L1 LINE L1 -2358 3788 3269 2120 279 47 21 chr1 160744632 160745663 -81918690 - L1PA15-16 LINE L1 -5503 1346 397 303 311 84 8 chr1 160746056 160746307 -81918046 + L1MEc LINE L1 1055 1324 -5072 357 275 47 5 chr1 160746308 160746519 -81917834 + L1M4 LINE L1 4140 4359 -1787 2888 141 41 10 chr1 160746529 160747404 -81916949 + L1P5 LINE L1 4796 5697 -454 3907 212 26 28 chr1 160747509 160748793 -81915560 + L1PA7 LINE L1 1036 2327 -4134 7355 116 14 56 chr1 160748808 160750855 -81913498 + L1PA7 LINE L1 4460 6468 -1 268 308 101 15 chr1 160751093 160751260 -81913093 - MIR SINE MIR -43 219 32 235 241 81 11 chr1 160751443 160751530 -81912823 - Tigger2 DNA MER2_type -2293 425 333 209 204 20 0 chr1 160751758 160751807 -81912546 + G-rich Low_complexity Low_complexity 2 51 0 242 252 0 27 chr1 160751820 160751931 -81912422 + G-rich Low_complexity Low_complexity 1 108 0 26 0 0 0 chr1 160751940 160751966 -81912387 + GC_rich Low_complexity Low_complexity 1 26 0 525 158 96 7 chr1 160752097 160752243 -81912110 + L1PA8 LINE L1 5909 6067 -105 * 2288 148 5 5 chr1 160752239 160752652 -81911701 - L1P5 LINE L1 -361 5795 5383 8807 141 19 5 chr1 160752661 160755282 -81909071 - L1MA1 LINE L1 0 6302 3642 215 354 83 21 chr1 160755674 160755866 -81908487 - MIR SINE MIR -27 235 32 1535 181 29 35 chr1 160757705 160757779 -81906574 - MLT1B LTR MaLR -49 341 268 1862 104 100 7 chr1 160757779 160758059 -81906294 - AluSx SINE Alu -6 306 1 1535 181 29 35 chr1 160758059 160758327 -81906026 - MLT1B LTR MaLR -122 268 1 192 256 40 68 chr1 160758714 160758890 -81905463 + L2 LINE L2 1335 1505 -1809 1380 134 197 33 chr1 160759071 160759376 -81904977 + THE1A LTR MaLR 1 355 0 23 68 0 0 chr1 160759380 160759424 -81904929 + AT_rich Low_complexity Low_complexity 1 44 0 2222 103 13 7 chr1 160760045 160760345 -81904008 + AluSg SINE Alu 1 302 -8 377 143 14 0 chr1 160760345 160760415 -81903938 + L1PB1 LINE L1 5965 6035 -116 * 5932 131 21 11 chr1 160760414 160761392 -81902961 + L1P3 LINE L1 8 995 -4880 225 0 0 0 chr1 160761508 160761535 -81902818 + L1PA8A LINE L1 6015 6041 -90 925 98 0 0 chr1 160761637 160761770 -81902583 + L1PB1 LINE L1 6018 6150 -1 1258 276 81 23 chr1 160761779 160763091 -81901262 + L1ME3A LINE L1 4373 5768 -402 692 179 68 49 chr1 160763132 160763294 -81901059 - MER58B DNA MER1_type -3 338 174 408 243 9 0 chr1 160763305 160763412 -81900941 + L1ME3A LINE L1 5802 5909 -261 278 298 57 13 chr1 160763427 160763585 -81900768 + L1ME3A LINE L1 6001 6165 -5 372 260 81 49 chr1 160764107 160764230 -81900123 - L2 LINE L2 0 3313 3187 1041 161 11 0 chr1 160764400 160764580 -81899773 - L1MC1 LINE L1 0 6333 6152 321 89 0 0 chr1 160764590 160764635 -81899718 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 2211 110 3 0 chr1 160764860 160765160 -81899193 - AluY SINE Alu -10 301 1 229 271 84 24 chr1 160765229 160765395 -81898958 - L1ME LINE L1 -238 5883 5708 191 286 20 0 chr1 160765435 160765484 -81898869 + L2 LINE L2 3215 3264 -8 409 277 42 0 chr1 160766251 160766370 -81897983 - L2 LINE L2 -1 3271 3148 1237 213 120 37 chr1 160766867 160767243 -81897110 + MLT2F LTR ERVL 188 594 -69 290 272 148 24 chr1 160767364 160767533 -81896820 + L2 LINE L2 3123 3312 -1 993 202 118 11 chr1 160767747 160768009 -81896344 + MLT1D LTR MaLR 4 293 -212 466 313 105 42 chr1 160768492 160769005 -81895348 + L2 LINE L2 2738 3272 0 274 315 139 0 chr1 160769128 160769236 -81895117 - MIR SINE MIR -11 251 129 525 310 83 14 chr1 160769438 160769654 -81894699 - MIR SINE MIR -21 241 11 449 337 12 18 chr1 160769690 160769859 -81894494 + MER5B DNA MER1_type 1 168 -10 250 307 159 23 chr1 160770515 160770686 -81893667 + MIR SINE MIR 21 206 -56 362 304 57 6 chr1 160770989 160771147 -81893206 + MLT1J2 LTR MaLR 1 166 -284 2473 61 0 0 chr1 160771470 160771765 -81892588 + AluY SINE Alu 1 295 -16 231 254 64 18 chr1 160771768 160771878 -81892475 + L1MA9 LINE L1 6196 6310 -2 455 168 102 29 chr1 160772943 160773080 -81891273 - MER104 DNA Tc2 0 180 34 284 276 112 17 chr1 160773291 160773407 -81890946 + L2 LINE L2 3187 3313 0 195 375 42 31 chr1 160773451 160773547 -81890806 + L2 LINE L2 3137 3233 -39 2412 82 0 0 chr1 160773583 160773888 -81890465 + AluY SINE Alu 1 305 -6 4760 116 74 38 chr1 160774366 160775208 -81889145 + MER4D LTR ERV1 1 872 0 1898 168 10 3 chr1 160775322 160775632 -81888721 + AluJb SINE Alu 1 312 0 187 157 39 20 chr1 160775632 160775683 -81888670 + GA-rich Low_complexity Low_complexity 3 54 0 189 0 0 0 chr1 160775688 160775709 -81888644 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 5686 44 1 3 chr1 160776547 160777492 -81886861 + L1P1 LINE L1 4658 5600 -555 251 214 4 52 chr1 160777598 160777858 -81886495 + G-rich Low_complexity Low_complexity 1 247 0 225 336 0 31 chr1 160778438 160778566 -81885787 + CT-rich Low_complexity Low_complexity 2 125 0 * 433 295 24 41 chr1 160778495 160778965 -81885388 + C-rich Low_complexity Low_complexity 1 462 0 641 121 0 30 chr1 160780259 160780378 -81883975 + AluSp/q SINE Alu 188 303 0 294 353 24 6 chr1 160780811 160780978 -81883375 + MER20B DNA MER1_type 2 171 -612 1661 149 3 30 chr1 160781006 160781301 -81883052 + AluJo SINE Alu 15 301 -11 2760 16 0 3 chr1 160781303 160781613 -81882740 + AluYa5 SINE Alu 1 309 -2 188 293 131 20 chr1 160781973 160782072 -81882281 - L3b LINE CR1 -9 1574 1465 316 330 69 35 chr1 160782834 160783007 -81881346 - L1ME LINE L1 -342 5779 5601 402 265 10 0 chr1 160783535 160783637 -81880716 + L1M3a LINE L1 12 114 -5841 351 250 0 12 chr1 160784229 160784309 -81880044 - MIR SINE MIR -113 149 71 1961 122 11 0 chr1 160785233 160785504 -81878849 + AluSq SINE Alu 40 313 0 695 151 7 82 chr1 160785857 160786003 -81878350 - FRAM SINE Alu -30 146 12 243 103 0 0 chr1 160786140 160786179 -81878174 + (TG)n Simple_repeat Simple_repeat 2 40 0 1908 145 0 36 chr1 160786477 160786781 -81877572 - AluJo SINE Alu -19 293 1 183 80 0 0 chr1 160786829 160786854 -81877499 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3673 186 43 41 chr1 160787375 160788078 -81876275 - L1PB3 LINE L1 0 6154 5453 2166 113 20 0 chr1 160788078 160788379 -81875974 - AluSx SINE Alu -5 307 1 3673 186 43 41 chr1 160788379 160789423 -81874930 - L1PB3 LINE L1 -701 5453 4396 520 129 51 0 chr1 160789983 160790322 -81874031 + (TA)n Simple_repeat Simple_repeat 1 356 0 59 15 0 0 chr1 160790322 160790388 -81873965 + AT_rich Low_complexity Low_complexity 1 66 0 261 154 33 0 chr1 160790388 160790479 -81873874 + (TA)n Simple_repeat Simple_repeat 1 94 0 595 64 64 29 chr1 160790511 160790684 -81873669 + (TA)n Simple_repeat Simple_repeat 2 180 0 30 0 0 0 chr1 160790687 160790717 -81873636 + AT_rich Low_complexity Low_complexity 1 30 0 373 176 40 40 chr1 160790717 160790863 -81873490 + (TTATA)n Simple_repeat Simple_repeat 3 178 0 330 152 33 60 chr1 160790843 160791027 -81873326 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 * 11460 42 1 0 chr1 160791047 160793213 -81871140 - L1PA4 LINE L1 -7 6148 3981 3190 28 0 0 chr1 160793213 160793601 -81870752 - L1PA4 LINE L1 -3060 3086 2699 298 317 154 5 chr1 160793748 160793956 -81870397 - MIR SINE MIR -14 248 10 2294 115 0 0 chr1 160794022 160794335 -81870018 - AluSq SINE Alu 0 313 1 1534 197 18 117 chr1 160794569 160795021 -81869332 + MLT1D-int LTR MaLR 963 1369 -2 911 248 113 29 chr1 160795046 160795592 -81868761 + MLT1D LTR MaLR 13 504 -1 586 187 180 20 chr1 160796827 160796977 -81867376 + MER5B DNA MER1_type 3 176 -2 1040 216 166 3 chr1 160797659 160797955 -81866398 - MER2 DNA MER2_type 0 344 1 915 287 91 31 chr1 160798442 160798843 -81865510 + L1M4 LINE L1 2806 3181 -2965 1902 167 3 0 chr1 160798843 160799142 -81865211 + AluJb SINE Alu 1 300 -12 915 287 91 31 chr1 160799142 160799685 -81864668 + L1M4 LINE L1 3181 3807 -2339 * 1697 11 0 0 chr1 160799667 160799857 -81864496 - L1P2 LINE L1 -529 5626 5437 259 27 0 0 chr1 160799854 160799891 -81864462 + L1PA2 LINE L1 6116 6152 -3 * 21 57 0 0 chr1 160799934 160799969 -81864384 + AT_rich Low_complexity Low_complexity 1 35 0 686 188 252 34 chr1 160800185 160800391 -81863962 + MER33 DNA MER1_type 1 161 -2424 2216 118 3 0 chr1 160800391 160800688 -81863665 - AluSp SINE Alu -13 300 3 686 188 252 34 chr1 160800688 160800747 -81863606 + MER33 DNA MER1_type 161 324 0 499 258 57 76 chr1 160800749 160801117 -81863236 + L1M4 LINE L1 4036 4396 -1750 229 206 44 29 chr1 160801273 160801341 -81863012 + MER113 DNA MER1_type? 329 397 -124 218 288 102 0 chr1 160801420 160801479 -81862874 + MER5A DNA MER1_type 9 73 -116 322 247 65 0 chr1 160802781 160802874 -81861479 + MIR SINE MIR 90 188 -74 531 222 20 0 chr1 160802940 160803039 -81861314 - L2 LINE L2 -3 3269 3169 2333 101 0 22 chr1 160803774 160804090 -81860263 - AluSx SINE Alu -1 311 3 559 322 35 26 chr1 160804235 160804462 -81859891 - MIR SINE MIR -6 256 28 997 272 23 7 chr1 160804646 160805008 -81859345 - LTR16A LTR ERVL -20 430 1 617 274 38 60 chr1 160805479 160805745 -81858608 - MIR SINE MIR 0 262 3 2874 297 80 14 chr1 160805988 160807354 -81856999 - L2 LINE L2 0 3313 1860 306 303 115 46 chr1 160807739 160807957 -81856396 - MIR SINE MIR 0 262 30 193 200 25 0 chr1 160808700 160808740 -81855613 + MIR3 SINE MIR 168 208 0 247 286 0 0 chr1 160810656 160810719 -81853634 - L2 LINE L2 0 3313 3251 231 325 108 0 chr1 160810935 160811018 -81853335 + MIR3 SINE MIR 6 97 -111 21 71 0 0 chr1 160812500 160812542 -81851811 + AT_rich Low_complexity Low_complexity 1 42 0 1040 149 77 10 chr1 160812688 160812882 -81851471 - MSTC LTR MaLR -221 207 1 255 93 0 0 chr1 160813296 160813339 -81851014 + (TA)n Simple_repeat Simple_repeat 2 44 0 449 145 232 0 chr1 160813345 160813457 -81850896 + L1M4 LINE L1 5656 5790 -384 850 98 30 0 chr1 160813459 160813592 -81850761 + L1MA5 LINE L1 6162 6298 -2 263 175 52 72 chr1 160813619 160813716 -81850637 - MER20B DNA MER1_type 0 783 689 665 280 114 76 chr1 160814343 160814575 -81849778 + L2 LINE L2 2272 2494 -820 2136 180 18 0 chr1 160814575 160814958 -81849395 - MLT1B LTR MaLR 0 390 1 665 280 114 76 chr1 160814958 160815171 -81849182 + L2 LINE L2 2494 2734 -580 1149 316 43 0 chr1 160816389 160816788 -81847565 - LTR16B LTR ERVL -11 453 38 304 197 82 0 chr1 160816790 160816851 -81847502 - LTR16B LTR ERVL -396 68 3 2254 170 35 16 chr1 160817408 160817832 -81846521 - MSTB1 LTR MaLR 0 432 1 238 399 23 8 chr1 160817914 160818047 -81846306 - L2 LINE L2 0 3272 3138 2224 104 0 0 chr1 160818065 160818353 -81846000 + AluSc SINE Alu 1 288 -21 184 250 173 0 chr1 160818386 160818438 -81845915 - MIR3 SINE MIR -4 204 144 564 165 0 41 chr1 160819012 160819133 -81845220 - FLAM_A SINE Alu 0 142 27 237 341 77 44 chr1 160819135 160819317 -81845036 + L2 LINE L2 2574 2761 -553 791 244 144 18 chr1 160820317 160820380 -81843973 - LTR50 LTR ERVL 0 795 741 2180 125 73 14 chr1 160820380 160820724 -81843629 + THE1B LTR MaLR 1 364 0 791 244 144 18 chr1 160820724 160821180 -81843173 - LTR50 LTR ERVL -54 741 11 289 202 48 60 chr1 160821492 160821547 -81842806 + L2 LINE L2 3231 3286 -27 207 100 0 0 chr1 160821547 160821577 -81842776 + (TG)n Simple_repeat Simple_repeat 1 30 0 289 202 48 60 chr1 160821577 160821605 -81842748 + L2 LINE L2 3286 3313 0 1576 194 7 7 chr1 160822105 160822393 -81841960 + L1MA9 LINE L1 11 298 -6732 2498 232 31 55 chr1 160822396 160823872 -81840481 + L1MA9 LINE L1 1310 2749 -4358 2389 154 49 10 chr1 160823877 160824287 -81840066 - MSTB LTR MaLR 0 426 1 775 112 47 82 chr1 160824287 160824457 -81839896 - MSTB-int LTR MaLR 0 1651 1488 1367 210 46 0 chr1 160824458 160824787 -81839566 + L1MA9 LINE L1 3643 3986 -3120 9362 166 40 15 chr1 160824795 160825025 -81839328 + L1MA9 LINE L1 4251 4474 -2798 1717 171 10 3 chr1 160825025 160825334 -81839019 + AluJb SINE Alu 1 311 -1 9362 166 40 15 chr1 160825334 160828051 -81836302 + L1MA9 LINE L1 4474 7257 -15 182 36 0 36 chr1 160828407 160828435 -81835918 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 462 287 75 11 chr1 160828459 160828633 -81835720 + MIR SINE MIR 59 243 -19 407 314 16 8 chr1 160828723 160828844 -81835509 + L2 LINE L2 3186 3307 -6 239 232 183 0 chr1 160828991 160829073 -81835280 + MIR SINE MIR 120 216 -46 222 349 142 0 chr1 160829950 160830056 -81834297 - MIR3 SINE MIR -7 201 81 227 231 62 15 chr1 160830182 160830247 -81834106 + MLT1J LTR MaLR 100 167 -344 510 324 107 39 chr1 160830646 160831362 -81832991 + L2 LINE L2 2492 3250 -22 363 325 32 6 chr1 160832075 160832232 -81832121 + MIR3 SINE MIR 41 201 -7 237 322 13 81 chr1 160832961 160833110 -81831243 + MIR3 SINE MIR 25 163 -45 325 276 239 8 chr1 160833951 160834085 -81830268 + MER46C DNA MER2_type 167 331 -7 2082 129 7 0 chr1 160834928 160835222 -81829131 + AluSx SINE Alu 1 296 -16 212 296 28 56 chr1 160835303 160835374 -81828979 - L2 LINE L2 -1 3271 3203 800 234 16 11 chr1 160836823 160837011 -81827342 + MER5A DNA MER1_type 1 189 0 219 299 93 31 chr1 160838360 160838457 -81825896 - L2 LINE L2 -10 3303 3201 203 381 10 10 chr1 160838645 160838742 -81825611 - L2 LINE L2 -305 2967 2871 666 311 68 52 chr1 160838754 160839239 -81825114 - MLT1J LTR MaLR -7 504 12 182 341 157 44 chr1 160839386 160839858 -81824495 - L2 LINE L2 -577 2737 2183 2613 40 0 0 chr1 160839858 160840157 -81824196 - AluY SINE Alu -12 299 1 182 341 157 44 chr1 160840157 160840277 -81824076 - L2 LINE L2 -1131 2183 2078 521 278 163 13 chr1 160841435 160841662 -81822691 + MIR SINE MIR 2 262 0 394 234 55 152 chr1 160842470 160842726 -81821627 - L2 LINE L2 -10 3262 3032 2578 72 32 3 chr1 160843317 160843665 -81820688 - L1PA8 LINE L1 -9 6163 5806 23 0 0 0 chr1 160844408 160844431 -81819922 + AT_rich Low_complexity Low_complexity 1 23 0 1050 144 29 11 chr1 160845012 160845186 -81819167 + L1PA15 LINE L1 5976 6152 -13 842 228 123 5 chr1 160845772 160845983 -81818370 - MIR SINE MIR -21 241 6 565 213 63 31 chr1 160846534 160846661 -81817692 - L2 LINE L2 -1 3271 3141 484 258 75 8 chr1 160847572 160847692 -81816661 - L2 LINE L2 0 3313 3186 1027 216 29 0 chr1 160848645 160848853 -81815500 + MER20 DNA MER1_type 2 215 -4 15971 127 48 22 chr1 160848870 160848951 -81815402 + Tigger2 DNA MER2_type 1 78 -2640 2397 86 0 10 chr1 160848951 160849253 -81815100 + AluSx SINE Alu 5 303 -9 15971 127 48 22 chr1 160849253 160849292 -81815061 + Tigger2 DNA MER2_type 78 115 -2603 2428 61 0 3 chr1 160849292 160849586 -81814767 + AluY SINE Alu 1 293 -18 15971 127 48 22 chr1 160849586 160852114 -81812239 + Tigger2 DNA MER2_type 115 2718 0 2474 135 28 9 chr1 160852162 160852591 -81811762 - LTR23 LTR ERV1 0 437 1 822 183 95 27 chr1 160852884 160853180 -81811173 - LTR48 LTR ERV1 0 729 471 316 265 10 29 chr1 160853180 160853280 -81811073 - LTR8 LTR ERV1 0 691 594 4202 115 10 2 chr1 160853280 160853887 -81810466 + MER41B LTR ERV1 1 612 -23 2426 187 40 55 chr1 160853886 160854490 -81809863 - LTR8 LTR ERV1 -96 595 1 * 1302 173 11 109 chr1 160854501 160854876 -81809477 - LTR49 LTR ERV1 -255 340 3 258 32 0 0 chr1 160855700 160855731 -81808622 + (CA)n Simple_repeat Simple_repeat 2 32 0 2921 252 82 17 chr1 160856057 160857293 -81807060 + L1MC4a LINE L1 3359 4760 -1386 2140 100 31 0 chr1 160857293 160857582 -81806771 + AluSp SINE Alu 1 298 -15 2921 252 82 17 chr1 160857582 160857962 -81806391 + L1MC4a LINE L1 4760 5114 -1032 2116 24 0 0 chr1 160858018 160858264 -81806089 + L1PA2 LINE L1 5909 6154 -1 700 183 14 56 chr1 160859455 160859597 -81804756 + AluJo SINE Alu 9 144 -168 2411 116 54 42 chr1 160859598 160860003 -81804350 + MSTB LTR MaLR 4 413 -13 274 282 18 67 chr1 160860005 160860227 -81804126 - LTR38B LTR ERV1 0 610 394 241 374 6 22 chr1 160860979 160861158 -81803195 - Charlie8 DNA MER1_type -2230 187 12 242 363 133 30 chr1 160861208 160861343 -81803010 - L3 LINE CR1 -15 1562 1414 330 273 183 36 chr1 160861541 160861874 -81802479 + L1MC4a LINE L1 5631 6015 -106 274 325 98 30 chr1 160862601 160862835 -81801518 + L2 LINE L2 2709 2958 -356 656 151 14 43 chr1 160862983 160863122 -81801231 - L1MA9 LINE L1 -77 6235 6101 2651 171 21 84 chr1 160863123 160863800 -81800553 + LTR27 LTR ERV1 3 636 0 1006 215 65 4 chr1 160863804 160864064 -81800289 - L1MA9 LINE L1 -210 6102 5827 2812 139 101 51 chr1 160864066 160864094 -81800259 + MER72 LTR ERV1 163 188 -534 450 0 0 0 chr1 160864094 160864144 -81800209 + (TG)n Simple_repeat Simple_repeat 2 51 0 2812 139 101 51 chr1 160864144 160864648 -81799705 + MER72 LTR ERV1 188 722 0 2909 161 45 31 chr1 160865902 160866479 -81797874 + MER34C LTR ERV1 1 585 0 327 397 6 6 chr1 160866507 160866663 -81797690 - L2 LINE L2 -554 2760 2605 243 319 111 0 chr1 160866921 160866993 -81797360 + L2 LINE L2 3189 3268 -4 760 279 37 33 chr1 160867326 160867598 -81796755 - MER57A LTR ERV1 0 403 131 203 296 19 0 chr1 160867712 160867766 -81796587 + L3b LINE CR1 1349 1403 -180 2074 139 0 0 chr1 160868210 160868505 -81795848 - AluSx SINE Alu -14 298 4 380 86 0 35 chr1 160868507 160868565 -81795788 - AluSg/x SINE Alu -166 134 79 861 114 0 0 chr1 160869117 160869249 -81795104 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 239 48 0 71 chr1 160869249 160869291 -81795062 + (GGGGA)n Simple_repeat Simple_repeat 3 41 0 760 275 43 12 chr1 160869517 160869775 -81794578 - HAL1 LINE L1 -868 1639 1374 493 294 110 60 chr1 160869813 160870249 -81794104 - HAL1 LINE L1 -2048 459 2 580 248 108 62 chr1 160870991 160871314 -81793039 - L1MC4a LINE L1 -1739 6069 5732 2023 222 83 33 chr1 160871327 160871926 -81792427 - LTR48B LTR ERV1 -13 631 3 883 141 0 0 chr1 160872396 160872517 -81791836 - FLAM_C SINE Alu -20 123 3 2264 117 3 0 chr1 160872830 160873138 -81791215 + AluSx SINE Alu 1 309 -3 1588 159 58 27 chr1 160873148 160873443 -81790910 + AluJo SINE Alu 3 306 -6 778 314 67 9 chr1 160873541 160874003 -81790350 + L1ME3A LINE L1 5401 5889 -281 413 290 152 23 chr1 160874248 160874465 -81789888 + MIR SINE MIR 14 258 -4 3969 172 62 38 chr1 160874616 160875713 -81788640 + L1MB8 LINE L1 5074 6178 0 1010 297 53 35 chr1 160876517 160876891 -81787462 - L3 LINE CR1 -67 1510 1130 349 270 230 7 chr1 160877083 160877231 -81787122 + MER5A DNA MER1_type 9 189 0 258 257 0 14 chr1 160877235 160877305 -81787048 + L1ME4a LINE L1 5598 5666 -455 1638 184 30 3 chr1 160877836 160878135 -81786218 - AluJo SINE Alu -5 307 1 707 306 44 33 chr1 160878286 160878557 -81785796 + L2 LINE L2 3036 3309 -4 216 360 72 9 chr1 160878936 160879047 -81785306 + L2 LINE L2 3195 3312 -1 350 206 122 19 chr1 160879163 160879270 -81785083 + L1ME4a LINE L1 5947 6064 -57 2118 105 108 15 chr1 160880633 160880976 -81783377 - THE1C LTR MaLR 0 375 1 700 230 41 36 chr1 160881070 160881266 -81783087 + MIR SINE MIR 64 260 -2 308 280 64 17 chr1 160881257 160881382 -81782971 - MIR SINE MIR -66 142 34 * 261 137 0 39 chr1 160881764 160881815 -81782538 - Alu SINE Alu -1 301 253 198 0 0 0 chr1 160881876 160881898 -81782455 + (A)n Simple_repeat Simple_repeat 1 22 0 249 233 0 50 chr1 160881898 160881958 -81782395 + MER5A DNA MER1_type 61 117 -72 216 0 0 0 chr1 160882279 160882303 -81782050 + (T)n Simple_repeat Simple_repeat 1 24 0 383 184 0 69 chr1 160882347 160882434 -81781919 + MER8 DNA MER2_type 1 81 -158 227 209 60 30 chr1 160883826 160883893 -81780460 - MER5A DNA MER1_type -2 187 119 983 107 134 0 chr1 160883896 160884045 -81780308 - AluSg/x SINE Alu -1 308 140 2342 85 3 0 chr1 160885112 160885406 -81778947 + AluSp SINE Alu 1 295 -18 570 259 72 30 chr1 160885731 160885967 -81778386 - MIR SINE MIR -10 252 7 1725 148 13 50 chr1 160885990 160886288 -81778065 + AluJb SINE Alu 1 287 -25 2261 76 20 23 chr1 160886734 160887036 -81777317 + AluY SINE Alu 3 303 -8 256 215 223 66 chr1 160887196 160887317 -81777036 + MER20B DNA MER1_type 4 143 -640 2199 129 0 0 chr1 160888025 160888328 -81776025 - AluSx SINE Alu -9 303 1 1684 192 7 11 chr1 160888724 160889010 -81775343 + AluJb SINE Alu 1 285 -27 611 253 139 0 chr1 160889539 160889697 -81774656 - MER5A DNA MER1_type 0 189 10 253 291 0 13 chr1 160890139 160890218 -81774135 - MIR SINE MIR -2 260 183 2200 145 76 12 chr1 160890315 160890723 -81773630 - MER65A LTR ERV1 -9 436 3 521 282 92 12 chr1 160891575 160891738 -81772615 - MER5B DNA MER1_type -1 177 2 852 162 110 35 chr1 160891747 160891832 -81772521 - MER5A DNA MER1_type 0 189 112 2339 157 23 35 chr1 160891832 160892265 -81772088 + MSTC LTR MaLR 1 428 0 852 162 110 35 chr1 160892265 160892352 -81772001 - MER5A DNA MER1_type -77 112 4 2139 97 20 30 chr1 160892659 160892959 -81771394 - AluSx SINE Alu -15 297 1 1737 152 21 14 chr1 160893137 160893427 -81770926 - AluJb SINE Alu 0 312 21 472 305 20 40 chr1 160893874 160894025 -81770328 + MIR3 SINE MIR 33 180 -28 1381 148 17 25 chr1 160894029 160894265 -81770088 - AluJo SINE Alu -78 234 1 1981 125 77 8 chr1 160895907 160896258 -81768095 - THE1C LTR MaLR 0 375 1 884 241 0 62 chr1 160896780 160897004 -81767349 - MIR SINE MIR -21 241 32 1438 185 75 8 chr1 160897315 160897572 -81766781 + AluJo SINE Alu 7 284 -28 324 0 0 0 chr1 160897572 160897608 -81766745 + (CA)n Simple_repeat Simple_repeat 1 36 0 263 369 56 25 chr1 160898464 160898624 -81765729 + L3 LINE CR1 1288 1452 -125 201 292 257 0 chr1 160900798 160900911 -81763442 + MER5B DNA MER1_type 1 142 -36 207 308 15 0 chr1 160900841 160900906 -81763447 - MER5A DNA MER1_type -72 117 52 479 348 64 49 chr1 160900914 160901446 -81762907 - L2 LINE L2 -558 2756 2217 453 301 61 67 chr1 160901451 160901763 -81762590 + L2 LINE L2 2552 2861 -453 346 341 39 0 chr1 160902070 160902249 -81762104 + MER5A DNA MER1_type 1 186 -3 549 246 0 26 chr1 160904044 160904202 -81760151 - MIR SINE MIR -5 257 106 21 36 0 0 chr1 160904414 160904442 -81759911 + AT_rich Low_complexity Low_complexity 1 28 0 240 302 34 74 chr1 160905365 160905399 -81758954 - MIR SINE MIR 0 262 228 1021 219 22 22 chr1 160905399 160905623 -81758730 + MER58A DNA MER1_type 1 224 0 240 302 34 74 chr1 160905623 160905737 -81758616 - MIR SINE MIR -34 228 120 21 0 0 0 chr1 160905790 160905811 -81758542 + AT_rich Low_complexity Low_complexity 1 21 0 354 302 63 74 chr1 160905996 160906185 -81758168 + MER5A DNA MER1_type 2 188 -1 1821 155 118 14 chr1 160906351 160906706 -81757647 + MSTD LTR MaLR 5 396 0 598 192 0 15 chr1 160907236 160907366 -81756987 + MSTD LTR MaLR 1 128 -268 547 214 23 102 chr1 160907380 160907595 -81756758 + MSTD LTR MaLR 260 457 0 629 283 136 42 chr1 160907596 160907928 -81756425 - LTR16B LTR ERVL -101 363 1 1919 164 52 9 chr1 160908085 160908414 -81755939 - MER61A LTR ERV1 0 343 1 20828 103 26 10 chr1 160908414 160912029 -81752324 - MER61A-int LTR ERV1 0 6066 1655 300 70 0 0 chr1 160912027 160912070 -81752283 - MER61A-int LTR ERV1 -3855 1362 1320 * 2151 166 34 15 chr1 160912063 160912706 -81751647 - MER61A-int LTR ERV1 -4440 777 1 1996 143 52 9 chr1 160912706 160913035 -81751318 - MER61A LTR ERV1 0 343 1 349 270 80 44 chr1 160913220 160913357 -81750996 + MIR3 SINE MIR 67 208 0 4743 68 0 0 chr1 160913473 160914064 -81750289 + LTR10C LTR ERV1 1 591 0 488 245 19 113 chr1 160914064 160914216 -81750137 + LTR10C-int LTR ERV1 5 115 -6534 225 0 0 0 chr1 160914216 160914241 -81750112 + (CA)n Simple_repeat Simple_repeat 2 26 0 488 245 19 113 chr1 160914241 160914398 -81749955 + LTR10C-int LTR ERV1 115 285 -6364 324 331 0 13 chr1 160915226 160915380 -81748973 + GA-rich Low_complexity Low_complexity 1 152 0 3357 104 33 7 chr1 160915405 160916008 -81748345 + LTR10C-int LTR ERV1 1919 2537 -4359 5491 285 40 35 chr1 160916196 160918470 -81745883 + LTR10C-int LTR ERV1 4363 6647 -2 4622 67 0 13 chr1 160918471 160919068 -81745285 + LTR10C LTR ERV1 1 589 -2 940 222 97 11 chr1 160919079 160919389 -81744964 - MER57A LTR ERV1 0 403 102 532 103 34 8 chr1 160919389 160919506 -81744847 + (TA)n Simple_repeat Simple_repeat 2 121 0 287 209 66 0 chr1 160919561 160919652 -81744701 - MER57A-int LTR ERV1 0 7537 7441 1783 175 6 32 chr1 160919792 160920106 -81744247 + AluJb SINE Alu 1 306 -6 1251 249 16 49 chr1 160921790 160922156 -81742197 - MER57A-int LTR ERV1 -1359 6178 5825 1897 85 253 159 chr1 160922438 160922967 -81741386 + LTR12 LTR ERV1 3 581 -133 2348 98 10 0 chr1 160923025 160923331 -81741022 - AluSc SINE Alu 0 309 1 2713 211 58 59 chr1 160923361 160924162 -81740191 - MER57A-int LTR ERV1 -1494 3442 3270 1696 206 13 0 chr1 160924162 160924468 -81739885 + AluJb SINE Alu 1 310 -2 2713 211 58 59 chr1 160924468 160925744 -81738609 - MER57A-int LTR ERV1 -1666 3270 1995 264 183 117 0 chr1 160925869 160925907 -81738446 - MER34 LTR ERV1 0 542 510 227 29 57 0 chr1 160925907 160925942 -81738411 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 264 183 117 0 chr1 160925942 160925963 -81738390 - MER34 LTR ERV1 -32 510 476 345 200 80 30 chr1 160925963 160926063 -81738290 - MER34 LTR ERV1 -305 237 133 1163 198 109 43 chr1 160926063 160926585 -81737768 - MER57A-int LTR ERV1 -3316 1807 1027 716 205 0 0 chr1 160926596 160926718 -81737635 + FLAM_C SINE Alu 1 122 -21 811 253 149 11 chr1 160927180 160927441 -81736912 - MER57A-int LTR ERV1 -7238 299 3 753 227 82 93 chr1 160927443 160927809 -81736544 - MER57A LTR ERV1 0 403 42 207 154 0 39 chr1 160927809 160927861 -81736492 + (TTAA)n Simple_repeat Simple_repeat 3 52 0 198 229 49 16 chr1 160927959 160928020 -81736333 - MIR SINE MIR -128 134 72 250 296 28 70 chr1 160928375 160928426 -81735927 - MIR SINE MIR -48 160 108 1812 144 31 69 chr1 160928426 160928816 -81735537 + THE1C LTR MaLR 1 375 0 250 296 28 70 chr1 160928816 160928906 -81735447 - MIR SINE MIR -100 108 23 847 180 0 7 chr1 160929118 160929257 -81735096 + AluJb SINE Alu 145 282 -30 409 253 11 0 chr1 160929974 160930065 -81734288 - L2 LINE L2 -1 3271 3180 188 289 9 79 chr1 160930103 160930217 -81734136 - MIR SINE MIR -42 220 115 361 169 15 0 chr1 160930286 160930351 -81734002 + L1PA8A LINE L1 6 71 -5804 4376 76 22 19 chr1 160930353 160931386 -81732967 - MER11A LTR ERVK 0 1266 1 24369 137 16 8 chr1 160931386 160937674 -81726679 + L1PA8A LINE L1 68 6482 -1 215 300 0 0 chr1 160938253 160938303 -81726050 + L3 LINE CR1 1526 1575 -2 6161 111 3 19 chr1 160938361 160939544 -81724809 + L1PB1 LINE L1 4986 6150 -1 739 285 72 26 chr1 160939608 160939997 -81724356 - MLT1I LTR MaLR 0 409 3 228 111 0 0 chr1 160940777 160940813 -81723540 + (CAT)n Simple_repeat Simple_repeat 1 36 0 3402 100 4 4 chr1 160940934 160941433 -81722920 - L1PB1 LINE L1 0 6151 5653 576 106 0 0 chr1 160941435 160941520 -81722833 - L1PBa LINE L1 -5734 1129 1045 3334 88 40 0 chr1 160941525 160942023 -81722330 - L1PBa LINE L1 -6345 518 1 954 150 6 6 chr1 160942035 160942202 -81722151 - L1MB5 LINE L1 -36 6138 5972 316 377 8 0 chr1 160942205 160942335 -81722018 - MIR SINE MIR -112 150 20 22 35 0 0 chr1 160942421 160942450 -81721903 + AT_rich Low_complexity Low_complexity 1 29 0 628 199 20 27 chr1 160993695 160993841 -81670512 - L1MEc LINE L1 -6216 180 36 658 154 0 0 chr1 160993854 160993958 -81670395 - LTR49-int LTR ERV1 -805 5526 5423 2040 142 69 85 chr1 160994003 160994568 -81669785 - LTR49-int LTR ERV1 -755 6241 4880 441 184 31 0 chr1 160994669 160994767 -81669586 - L1MDa LINE L1 -4269 2157 2057 782 210 74 21 chr1 160994791 160995084 -81669269 - L1MDa LINE L1 -4434 1992 1706 216 0 0 0 chr1 160995089 160995113 -81669240 + (TA)n Simple_repeat Simple_repeat 1 24 0 2197 117 0 0 chr1 160995113 160995405 -81668948 - AluSx SINE Alu -16 296 5 1148 111 0 6 chr1 160995484 160995665 -81668688 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2038 123 0 0 chr1 160995666 160995942 -81668411 - AluSx SINE Alu -34 278 3 417 112 56 0 chr1 160995951 160996040 -81668313 + CT-rich Low_complexity Low_complexity 2 95 0 946 157 0 57 chr1 160996044 160996203 -81668150 - FRAM SINE Alu -26 150 1 383 225 0 11 chr1 160996203 160996292 -81668061 - L1MDa LINE L1 -4860 1566 1479 261 125 22 0 chr1 160996676 160996736 -81667617 + L1MA8 LINE L1 6234 6285 -6 319 304 18 0 chr1 160997727 160997895 -81666458 + LTR37B LTR ERV1 266 436 -32 2331 95 3 3 chr1 160997896 160998200 -81666153 - AluSp SINE Alu -9 304 1 2460 92 0 0 chr1 160998332 160998636 -81665717 - AluSx SINE Alu -8 304 1 232 254 16 16 chr1 160998788 160998851 -81665502 + CT-rich Low_complexity Low_complexity 1 63 0 222 239 42 14 chr1 160998873 160998944 -81665409 - MIR SINE MIR -1 261 189 373 235 24 0 chr1 160999067 160999152 -81665201 + MER20 DNA MER1_type 1 87 -132 778 129 24 8 chr1 160999297 160999421 -81664932 - FLAM_C SINE Alu -6 137 12 2001 151 26 0 chr1 160999429 160999733 -81664620 - AluSx SINE Alu 0 312 1 1168 138 0 33 chr1 160999735 160999916 -81664437 - FRAM SINE Alu -9 167 1 293 219 56 69 chr1 161000116 161000276 -81664077 - L1MC5 LINE L1 -55 7906 7749 1826 157 0 7 chr1 161000306 161000593 -81663760 - AluSq SINE Alu -26 287 3 299 227 99 57 chr1 161001429 161001570 -81662783 - MER117 DNA MER1_type -34 163 17 185 341 24 12 chr1 161001719 161001801 -81662552 + MIR SINE MIR 21 103 -105 2091 100 62 0 chr1 161002620 161002910 -81661443 + AluSx SINE Alu 1 308 -4 208 260 20 0 chr1 161003192 161003242 -81661111 + MIR3 SINE MIR 151 201 -7 243 61 0 0 chr1 161003282 161003315 -81661038 + (CA)n Simple_repeat Simple_repeat 2 34 0 825 122 0 43 chr1 161003573 161003712 -81660641 + FLAM_C SINE Alu 1 133 0 1408 102 0 0 chr1 161004124 161004301 -81660052 + AluSx SINE Alu 1 177 -135 257 139 0 0 chr1 161004476 161004519 -81659834 - L2 LINE L2 -1 3312 3270 222 369 0 0 chr1 161004601 161004685 -81659668 - L3b LINE CR1 -351 1232 1149 208 128 77 0 chr1 161004733 161004772 -81659581 - L2 LINE L2 -87 3226 3185 368 291 88 14 chr1 161005257 161005405 -81658948 - MIR SINE MIR -92 170 12 228 278 0 0 chr1 161006283 161006337 -81658016 + (TA)n Simple_repeat Simple_repeat 2 55 0 583 145 50 31 chr1 161006341 161006500 -81657853 + Charlie5 DNA MER1_type 2418 2579 -33 304 265 60 0 chr1 161006516 161006579 -81657774 + MER5A DNA MER1_type 9 80 -109 2168 89 0 32 chr1 161006579 161006894 -81657459 + AluY SINE Alu 1 305 -6 304 265 60 0 chr1 161006894 161006913 -81657440 + MER5A DNA MER1_type 80 96 -93 208 200 147 107 chr1 161006999 161007080 -81657273 - MER5C DNA MER1_type -2 322 246 2479 74 0 3 chr1 161007080 161007392 -81656961 + AluY SINE Alu 1 311 0 208 200 147 107 chr1 161007392 161007460 -81656893 - MER5C DNA MER1_type -78 246 167 575 210 24 24 chr1 161008242 161008366 -81655987 - MER5C DNA MER1_type -200 124 1 22 0 0 0 chr1 161008669 161008691 -81655662 + AT_rich Low_complexity Low_complexity 1 22 0 441 337 89 28 chr1 161008931 161009323 -81655030 + L2 LINE L2 2431 2846 -468 1922 155 10 3 chr1 161010052 161010356 -81653997 - AluJb SINE Alu -6 306 1 2071 110 49 29 chr1 161010787 161011132 -81653221 + THE1B LTR MaLR 1 352 -12 1899 72 4 4 chr1 161011140 161011418 -81652935 + THE1B-int LTR MaLR 1 278 -1302 269 186 0 12 chr1 161012932 161013018 -81651335 + CT-rich Low_complexity Low_complexity 2 86 0 9376 79 23 3 chr1 161013653 161014946 -81649407 + THE1B-int LTR MaLR 261 1579 -1 2067 138 51 28 chr1 161014947 161015303 -81649050 + THE1B LTR MaLR 1 364 0 1615 177 13 32 chr1 161015477 161015788 -81648565 - AluJo SINE Alu -6 306 2 2011 109 57 0 chr1 161015855 161016138 -81648215 + AluY SINE Alu 1 299 -12 1357 156 0 14 chr1 161016238 161016449 -81647904 - AluJb SINE Alu -18 294 87 24 32 0 0 chr1 161016451 161016482 -81647871 + AT_rich Low_complexity Low_complexity 1 31 0 277 337 51 10 chr1 161017003 161017101 -81647252 + MIR SINE MIR 16 117 -91 328 344 117 0 chr1 161018307 161018461 -81645892 - L3 LINE CR1 -9 1568 1397 225 318 111 0 chr1 161018570 161018633 -81645720 - L2 LINE L2 -17 3255 3186 268 364 116 0 chr1 161018836 161018965 -81645388 + MIR3 SINE MIR 14 157 -51 187 255 64 0 chr1 161019069 161019116 -81645237 + L3 LINE CR1 1526 1575 -2 372 263 88 50 chr1 161019226 161019386 -81644967 + MARNA DNA Mariner 366 531 -55 23 0 0 0 chr1 161019398 161019421 -81644932 + AT_rich Low_complexity Low_complexity 1 23 0 304 311 89 56 chr1 161020106 161020286 -81644067 + L2 LINE L2 3078 3263 -9 779 299 20 16 chr1 161021280 161021524 -81642829 - MIR SINE MIR -3 259 15 267 292 69 28 chr1 161023100 161023244 -81641109 - MIR SINE MIR -42 220 71 973 207 6 0 chr1 161024578 161024752 -81639601 - FAM SINE Alu 0 175 1 369 93 0 0 chr1 161025237 161025291 -81639062 + (A)n Simple_repeat Simple_repeat 1 54 0 969 217 8 35 chr1 161025651 161025909 -81638444 + MER58B DNA MER1_type 85 335 -6 1969 158 30 0 chr1 161026427 161026730 -81637623 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 161026742 161026764 -81637589 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr1 161026858 161026895 -81637458 + AT_rich Low_complexity Low_complexity 1 37 0 416 225 0 0 chr1 161028962 161029051 -81635302 + MER89 LTR ERV1 1 89 -470 * 1223 214 36 7 chr1 161029024 161029250 -81635103 + MER89 LTR ERV1 197 434 -125 228 35 0 0 chr1 161029250 161029279 -81635074 + (CA)n Simple_repeat Simple_repeat 2 30 0 1223 214 36 7 chr1 161029279 161029327 -81635026 + MER89 LTR ERV1 434 479 -80 22 35 0 0 chr1 161029384 161029413 -81634940 + AT_rich Low_complexity Low_complexity 1 29 0 323 293 19 57 chr1 161029419 161029576 -81634777 - MIR SINE MIR -64 198 48 738 261 10 43 chr1 161030375 161030582 -81633771 + MIR SINE MIR 63 262 0 200 300 93 40 chr1 161030630 161030780 -81633573 + L2 LINE L2 2272 2429 -885 1606 177 51 6 chr1 161030843 161031193 -81633160 + LTR37A LTR ERV1 60 425 -1 648 276 111 19 chr1 161031336 161031571 -81632782 + MIR SINE MIR 9 260 -2 414 296 57 11 chr1 161032404 161032580 -81631773 + L1MC/D LINE L1 5541 5724 -2084 598 330 53 57 chr1 161032868 161033131 -81631222 - MER4C-int LTR ERV1 -1750 2897 2634 2251 109 3 0 chr1 161033131 161033425 -81630928 - AluSg SINE Alu -15 295 1 598 330 53 57 chr1 161033425 161033922 -81630431 - MER4C-int LTR ERV1 -2013 2634 2140 2751 10 0 3 chr1 161034068 161034376 -81629977 + AluYa5 SINE Alu 1 307 -4 295 279 47 64 chr1 161034909 161035144 -81629209 - MER4C-int LTR ERV1 -2983 4773 4101 287 245 31 31 chr1 161035209 161035307 -81629046 - MER4C-int LTR ERV1 -3323 3478 3381 280 313 27 27 chr1 161035402 161035626 -81628727 - MER4C-int LTR ERV1 -4372 4054 3831 927 298 51 25 chr1 161035985 161036468 -81627885 - MER4C-int LTR ERV1 -3273 3818 155 2121 120 3 0 chr1 161037543 161037835 -81626518 + AluSg SINE Alu 3 295 -15 625 203 73 45 chr1 161039405 161039915 -81624438 - MER4C-int LTR ERV1 -5929 669 1 419 157 264 14 chr1 161039917 161040057 -81624296 - MER4C LTR ERV1 0 465 291 1202 127 133 51 chr1 161040133 161040449 -81623904 - MER4A LTR ERV1 -322 342 1 1625 227 68 59 chr1 161040481 161041088 -81623265 - LTR9 LTR ERV1 0 612 1 381 233 0 0 chr1 161041107 161041180 -81623173 + L1M2 LINE L1 1095 1167 -5682 483 173 12 105 chr1 161041465 161041627 -81622726 + MLT1J1 LTR MaLR 10 156 -290 1115 268 86 0 chr1 161041715 161041995 -81622358 + L1M2 LINE L1 896 1199 -5650 3861 173 8 26 chr1 161042007 161042879 -81621474 + L1M2 LINE L1 1421 2276 -4573 * 9636 185 15 39 chr1 161042871 161045855 -81618498 + L1M2 LINE L1 2764 5712 -1136 2401 99 0 3 chr1 161045855 161046159 -81618194 + AluSc SINE Alu 1 303 -6 9636 185 15 39 chr1 161046159 161046448 -81617905 + L1M2 LINE L1 5712 6007 -841 1693 209 3 3 chr1 161046459 161046761 -81617592 + AluJb SINE Alu 1 302 -10 306 0 0 0 chr1 161046761 161046795 -81617558 + (GGA)n Simple_repeat Simple_repeat 1 34 0 1112 118 114 88 chr1 161046854 161047082 -81617271 + LTR12 LTR ERV1 1 234 -480 386 168 84 99 chr1 161047169 161047300 -81617053 + LTR30 LTR ERV1 524 723 -71 681 109 0 0 chr1 161047300 161047392 -81616961 + LTR12 LTR ERV1 492 583 -131 33527 108 10 9 chr1 161047414 161052955 -81611398 + HERV9 LTR ERV1 59 5692 -2707 9619 115 11 12 chr1 161052955 161054370 -81609983 + HERV9 LTR ERV1 6982 8395 -4 289 211 0 0 chr1 161054374 161054426 -81609927 + LTR30 LTR ERV1 1 52 -670 932 157 45 52 chr1 161054426 161054694 -81609659 + LTR12 LTR ERV1 100 2032 -406 317 233 11 0 chr1 161054696 161054786 -81609567 + LTR30 LTR ERV1 553 643 -79 721 99 0 10 chr1 161054788 161054889 -81609464 + LTR12 LTR ERV1 615 714 0 2658 82 15 18 chr1 161054912 161055255 -81609098 - L1PA8A LINE L1 -1 6130 5789 614 263 166 5 chr1 161055270 161055475 -81608878 + MER102a DNA MER1_type 78 315 -15 2136 108 0 0 chr1 161056986 161057284 -81607069 + AluSx SINE Alu 6 303 0 472 305 26 7 chr1 161057459 161057610 -81606743 - MIR3 SINE MIR -25 183 30 237 250 47 0 chr1 161058010 161058074 -81606279 + L2 LINE L2 3206 3272 0 371 341 98 5 chr1 161058412 161058617 -81605736 - MIR SINE MIR -17 245 22 275 135 0 0 chr1 161059968 161060005 -81604348 - MER46A DNA MER2_type 0 236 200 2169 102 7 3 chr1 161060005 161060316 -81604037 + AluSx SINE Alu 1 312 0 837 109 0 25 chr1 161060350 161060469 -81603884 + AluJb SINE Alu 11 126 -186 1027 197 43 0 chr1 161060486 161060674 -81603679 - MER46A DNA MER2_type -38 198 3 898 241 22 77 chr1 161060676 161060796 -81603557 - MIR SINE MIR -2 260 135 3365 166 170 28 chr1 161060796 161061519 -81602834 - LTR1B LTR ERV1 0 826 1 898 241 22 77 chr1 161061519 161061672 -81602681 - MIR SINE MIR -127 135 2 833 132 0 0 chr1 161062678 161062792 -81601561 + FLAM_C SINE Alu 14 127 -16 319 274 41 34 chr1 161063139 161063285 -81601068 - L1ME4a LINE L1 -3 6118 5972 2032 180 0 17 chr1 161063294 161063644 -81600709 + MER2 DNA MER2_type 1 344 0 415 307 127 67 chr1 161063684 161063951 -81600402 - L2 LINE L2 -1 3271 2989 275 310 125 71 chr1 161063945 161064313 -81600040 - L2 LINE L2 -1389 1925 1538 * 2001 142 0 0 chr1 161064542 161064823 -81599530 + AluSx SINE Alu 1 281 -31 2128 141 0 0 chr1 161065353 161065650 -81598703 + AluSx SINE Alu 1 297 -15 186 313 113 25 chr1 161065891 161065971 -81598382 + MIR SINE MIR 32 118 -90 28 0 0 0 chr1 161066450 161066478 -81597875 + AT_rich Low_complexity Low_complexity 1 28 0 1628 162 44 4 chr1 161066811 161067108 -81597245 + AluSg SINE Alu 1 308 0 355 265 59 35 chr1 161067147 161067317 -81597036 - MARNA DNA Mariner -155 431 258 1935 142 3 0 chr1 161067807 161068096 -81596257 - AluJb SINE Alu 0 312 23 1389 222 26 92 chr1 161068373 161068841 -81595512 - LTR56 LTR ERV1 0 445 9 183 321 89 58 chr1 161069111 161069301 -81595052 + L2 LINE L2 2920 3115 -157 443 266 46 0 chr1 161069305 161069414 -81594939 + MIR SINE MIR 3 116 -146 238 333 11 0 chr1 161069514 161069604 -81594749 + MIR SINE MIR 110 200 -62 1800 156 11 4 chr1 161069609 161069885 -81594468 + AluJb SINE Alu 6 283 -29 255 187 53 53 chr1 161069894 161069969 -81594384 + MIR SINE MIR 185 259 -3 2161 131 0 7 chr1 161070009 161070314 -81594039 - AluSq SINE Alu -10 303 1 2303 98 3 0 chr1 161070340 161070636 -81593717 + AluSx SINE Alu 1 297 -15 2551 93 17 11 chr1 161072384 161072739 -81591614 - THE1B LTR MaLR -7 357 1 286 333 21 0 chr1 161073155 161073248 -81591105 - L2 LINE L2 -977 2337 2243 23 0 0 0 chr1 161074319 161074342 -81590011 + AT_rich Low_complexity Low_complexity 1 23 0 1864 175 0 0 chr1 161075149 161075495 -81588858 - AluSq SINE Alu 0 346 1 206 171 24 0 chr1 161075635 161075676 -81588677 + T-rich Low_complexity Low_complexity 1 42 0 1015 136 12 24 chr1 161075804 161075973 -81588380 - AluSg/x SINE Alu -22 288 122 517 286 136 10 chr1 161077186 161077392 -81586961 + MIR SINE MIR 19 250 -12 1696 183 7 0 chr1 161078584 161078873 -81585480 - AluJo SINE Alu -21 291 1 252 122 0 0 chr1 161078922 161078963 -81585390 + (CA)n Simple_repeat Simple_repeat 2 42 0 27 0 0 0 chr1 161078982 161079009 -81585344 + AT_rich Low_complexity Low_complexity 1 27 0 295 293 50 40 chr1 161079485 161079584 -81584769 + MIR3 SINE MIR 4 103 -105 2639 258 73 44 chr1 161079640 161080918 -81583435 + L2 LINE L2 2000 3313 0 31 26 0 0 chr1 161082577 161082615 -81581738 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 161082861 161082882 -81581471 + AT_rich Low_complexity Low_complexity 1 21 0 298 385 10 10 chr1 161083836 161084036 -81580317 + L2 LINE L2 2508 2707 -607 2780 81 28 11 chr1 161084044 161084402 -81579951 + THE1B LTR MaLR 1 364 0 758 208 104 19 chr1 161084518 161084672 -81579681 - AluJo SINE Alu -45 267 101 837 171 0 59 chr1 161084673 161084825 -81579528 - FLAM_C SINE Alu 0 143 1 484 217 0 0 chr1 161084847 161084930 -81579423 - AluJ/FLAM SINE Alu -226 86 4 941 302 55 12 chr1 161085023 161085367 -81578986 - LTR33 LTR ERVL -158 363 5 202 246 46 154 chr1 161085370 161085433 -81578920 + L2 LINE L2 2715 2759 -555 2244 120 7 0 chr1 161085433 161085732 -81578621 + AluSx SINE Alu 1 301 -11 202 246 46 154 chr1 161085732 161085798 -81578555 + L2 LINE L2 2759 2830 -484 458 269 264 0 chr1 161086384 161086566 -81577787 + MIR SINE MIR 8 237 -25 2543 133 5 19 chr1 161087813 161088182 -81576171 + THE1B LTR MaLR 1 364 0 1500 174 110 4 chr1 161088356 161088620 -81575733 - AluJb SINE Alu -20 292 1 840 294 108 38 chr1 161088647 161089018 -81575335 - L2 LINE L2 0 3313 2917 827 185 15 0 chr1 161089075 161089205 -81575148 + FLAM_C SINE Alu 1 132 -1 2505 112 56 33 chr1 161089218 161089448 -81574905 + L1PB4 LINE L1 5353 5599 -557 2327 101 3 0 chr1 161089448 161089746 -81574607 + AluSp SINE Alu 1 299 -14 2505 112 56 33 chr1 161089746 161089942 -81574411 + L1PB4 LINE L1 5599 5789 -367 219 204 0 0 chr1 161089942 161089996 -81574357 + (TG)n Simple_repeat Simple_repeat 1 54 0 2205 102 9 126 chr1 161089996 161090215 -81574138 + L1PB4 LINE L1 5777 5923 -233 2467 118 32 32 chr1 161090215 161090589 -81573764 - THE1C LTR MaLR -1 374 1 2205 102 9 126 chr1 161090589 161090799 -81573554 + L1PB4 LINE L1 5923 6156 0 25 0 0 0 chr1 161090884 161090909 -81573444 + AT_rich Low_complexity Low_complexity 1 25 0 1627 197 0 7 chr1 161091316 161091610 -81572743 + AluJo SINE Alu 13 304 -8 1892 176 6 0 chr1 161091743 161092055 -81572298 - LTR26 LTR ERV1 -2 601 288 749 129 0 26 chr1 161092074 161092190 -81572163 - FLAM_C SINE Alu 0 143 31 1797 148 0 30 chr1 161092206 161092509 -81571844 + AluJo SINE Alu 1 294 -18 248 180 0 20 chr1 161092591 161092641 -81571712 - Alu SINE Alu -135 168 120 * 1679 138 78 0 chr1 161092627 161092896 -81571457 - LTR26 LTR ERV1 -313 290 1 2808 104 3 6 chr1 161093342 161093707 -81570646 - THE1B LTR MaLR 0 364 1 794 217 6 19 chr1 161093982 161094143 -81570210 + FRAM SINE Alu 1 159 -7 353 311 94 55 chr1 161095305 161095733 -81568620 + L2 LINE L2 2712 3239 -74 1961 138 7 7 chr1 161095774 161096072 -81568281 - AluSx SINE Alu -14 298 1 838 189 0 0 chr1 161096486 161096634 -81567719 - AluSg/x SINE Alu -28 284 137 31 68 0 0 chr1 161096670 161096729 -81567624 + AT_rich Low_complexity Low_complexity 1 59 0 333 0 0 0 chr1 161097076 161097113 -81567240 + (TG)n Simple_repeat Simple_repeat 1 37 0 219 36 0 0 chr1 161097112 161097140 -81567213 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1945 131 30 10 chr1 161097372 161097669 -81566684 + AluSq SINE Alu 1 303 -10 823 240 57 9 chr1 161098117 161098346 -81566007 - MIR SINE MIR -21 241 2 582 203 67 146 chr1 161098505 161098637 -81565716 + LTR37B LTR ERV1 97 238 -230 1624 218 3 0 chr1 161098637 161098931 -81565422 + AluJo SINE Alu 6 300 -12 582 203 67 146 chr1 161098931 161099202 -81565151 + LTR37B LTR ERV1 238 468 0 1037 124 6 51 chr1 161099364 161099542 -81564811 - AluJo SINE Alu -7 305 136 718 197 0 0 chr1 161099899 161100031 -81564322 - AluJo SINE Alu -169 133 2 2116 123 0 0 chr1 161100319 161100604 -81563749 + AluSg1 SINE Alu 1 285 -24 31960 110 10 61 chr1 161101192 161106575 -81557778 + L1PA7 LINE L1 2 4986 -1168 2346 92 0 0 chr1 161106575 161106869 -81557484 + AluY SINE Alu 12 305 -6 31960 110 10 61 chr1 161106869 161107978 -81556375 + L1PA7 LINE L1 4986 6150 -4 230 211 19 0 chr1 161107978 161108030 -81556323 + (TA)n Simple_repeat Simple_repeat 2 54 0 1916 134 27 7 chr1 161108307 161108605 -81555748 - AluSx SINE Alu -8 304 1 1645 188 3 29 chr1 161109368 161109682 -81554671 + AluJo SINE Alu 1 306 -6 25 0 0 0 chr1 161109707 161109732 -81554621 + AT_rich Low_complexity Low_complexity 1 25 0 1445 186 0 8 chr1 161109872 161110124 -81554229 + AluJo SINE Alu 61 310 -2 296 277 215 37 chr1 161110277 161110519 -81553834 + HAL1 LINE L1 2 286 -2221 614 231 0 0 chr1 161110608 161110738 -81553615 - FLAM_A SINE Alu -3 130 1 986 259 125 67 chr1 161110780 161111102 -81553251 + HAL1 LINE L1 625 927 -1580 2168 118 0 40 chr1 161111102 161111423 -81552930 + AluSg SINE Alu 2 309 -1 986 259 125 67 chr1 161111423 161111732 -81552621 + HAL1 LINE L1 927 1293 -1214 * 5481 51 0 1 chr1 161111729 161112391 -81551962 + L1PA5 LINE L1 5321 5981 -173 1853 112 14 25 chr1 161112425 161112702 -81551651 + AluSx SINE Alu 15 288 -24 252 182 73 0 chr1 161112809 161112864 -81551489 - L2 LINE L2 -996 2318 2260 1650 159 7 34 chr1 161113560 161113856 -81550497 + AluJo SINE Alu 1 288 -24 2025 148 67 28 chr1 161113927 161114360 -81549993 + LTR7 LTR ERV1 1 450 0 216 335 18 72 chr1 161114363 161114530 -81549823 - L2 LINE L2 -199 3073 2916 579 242 90 49 chr1 161114760 161114936 -81549417 - L1ME1 LINE L1 -39 6139 5925 2147 142 0 3 chr1 161114936 161115246 -81549107 - AluSx SINE Alu -3 309 1 579 242 90 49 chr1 161115246 161115336 -81549017 - L1ME1 LINE L1 -253 5925 5840 1446 104 41 5 chr1 161115337 161115558 -81548795 + LTR26B LTR ERV1 1 229 -302 43358 33 22 1 chr1 161115558 161121569 -81542784 + L1PA2 LINE L1 36 6174 0 2237 139 18 0 chr1 161121615 161121952 -81542401 + LTR26B LTR ERV1 189 531 0 2618 187 62 32 chr1 161121953 161122582 -81541771 - L1ME1 LINE L1 -328 5838 5187 1059 164 0 0 chr1 161122692 161122851 -81541502 + AluJ SINE Alu 1 159 -153 3735 142 158 26 chr1 161122852 161123578 -81540775 - LTR12 LTR ERV1 0 826 5 2397 196 34 34 chr1 161123615 161124212 -81540141 - pTR5 LTR ERV1 -1097 1341 745 942 135 14 14 chr1 161124212 161124360 -81539993 + AluJ SINE Alu 155 302 -10 527 288 40 66 chr1 161124361 161124663 -81539690 - L2 LINE L2 -738 2576 2283 2252 118 0 0 chr1 161124715 161125012 -81539341 - AluSx SINE Alu -15 297 1 381 283 97 0 chr1 161125012 161125125 -81539228 - L1MC/D LINE L1 -2144 5664 5541 1124 61 0 0 chr1 161125131 161125262 -81539091 + AluSg SINE Alu 1 131 -179 259 209 88 3 chr1 161125390 161125506 -81538847 - L1M1 LINE L1 -866 5431 5305 403 368 79 5 chr1 161125511 161125889 -81538464 - L1MC/D LINE L1 -860 5286 4881 1201 179 143 16 chr1 161125961 161126212 -81538141 - AluJo SINE Alu -21 291 9 1776 187 10 3 chr1 161126244 161126543 -81537810 - AluJo SINE Alu -11 301 1 608 262 29 104 chr1 161127477 161127606 -81536747 - MIR SINE MIR 0 262 125 2159 124 0 10 chr1 161127606 161127905 -81536448 - AluSq SINE Alu -17 296 1 608 262 29 104 chr1 161127905 161127961 -81536392 - MIR SINE MIR -137 125 66 2129 142 0 10 chr1 161127961 161128294 -81536059 + AluSx SINE Alu 1 312 0 608 262 29 104 chr1 161128294 161128386 -81535967 - MIR SINE MIR -196 66 5 1860 189 0 0 chr1 161128592 161128898 -81535455 + AluJo SINE Alu 1 306 -6 832 237 0 0 chr1 161128912 161129068 -81535285 + FRAM SINE Alu 6 161 -15 23 0 0 0 chr1 161129240 161129263 -81535090 + AT_rich Low_complexity Low_complexity 1 23 0 2268 111 0 0 chr1 161129645 161129943 -81534410 + AluSx SINE Alu 2 299 -13 476 349 8 38 chr1 161130426 161130661 -81533692 + L3 LINE CR1 990 1217 -360 746 305 144 24 chr1 161130763 161131340 -81533013 + L2 LINE L2 96 741 -2573 1409 194 0 4 chr1 161131394 161131631 -81532722 - AluJb SINE Alu -76 236 1 1009 304 118 32 chr1 161131721 161131905 -81532448 + L2 LINE L2 2153 2320 -993 2158 136 0 3 chr1 161131905 161132206 -81532147 - AluSq SINE Alu -13 300 1 1009 304 118 32 chr1 161132206 161132451 -81531902 + L2 LINE L2 2320 2543 -770 4646 83 85 2 chr1 161132451 161133086 -81531267 - LTR12 LTR ERV1 0 688 1 1009 304 118 32 chr1 161133086 161133712 -81530641 + L2 LINE L2 2543 3313 0 1358 62 193 0 chr1 161134764 161134956 -81529397 + AluY SINE Alu 83 311 0 2241 125 3 0 chr1 161135199 161135510 -81528843 - AluSx SINE Alu 0 312 1 648 235 39 147 chr1 161136020 161136367 -81527986 - Charlie8 DNA MER1_type -70 271 104 2427 101 0 0 chr1 161136367 161136673 -81527680 - AluSc SINE Alu -2 307 2 648 235 39 147 chr1 161136673 161136767 -81527586 - Charlie8 DNA MER1_type -237 104 1 1884 154 18 0 chr1 161137182 161137468 -81526885 + AluSx SINE Alu 4 294 -18 1371 168 5 0 chr1 161137530 161137750 -81526603 - AluJb SINE Alu -7 305 85 4450 128 36 36 chr1 161138453 161138724 -81525629 + LTR19C LTR ERV1 1 271 -508 2530 48 0 0 chr1 161138724 161139019 -81525334 - AluY SINE Alu -16 295 1 4450 128 36 36 chr1 161139019 161139526 -81524827 + LTR19C LTR ERV1 270 779 0 728 177 92 14 chr1 161139566 161139629 -81524724 - AluJb SINE Alu -9 303 246 4894 101 1 8 chr1 161139629 161140293 -81524060 - PABL_A LTR ERV1 0 660 1 728 177 92 14 chr1 161140293 161140370 -81523983 - AluJb SINE Alu -66 246 152 911 140 89 67 chr1 161140371 161140770 -81523583 - LTR7 LTR ERV1 -1 449 1 823 153 0 0 chr1 161140781 161140905 -81523448 - FLAM_C SINE Alu -5 138 15 1536 152 75 75 chr1 161141168 161141543 -81522810 - THE1C LTR MaLR 0 375 1 941 116 0 8 chr1 161141755 161141884 -81522469 + FLAM_C SINE Alu 1 128 -15 329 115 19 0 chr1 161141904 161141956 -81522397 + HsTC2 DNA Tc2 1846 1898 0 660 245 65 65 chr1 161141959 161142253 -81522100 - L2 LINE L2 -609 2705 2412 307 315 9 9 chr1 161142267 161142375 -81521978 + MIR3 SINE MIR 53 160 -48 669 230 24 0 chr1 161142532 161142658 -81521695 + FLAM_A SINE Alu 1 129 -4 1923 217 80 75 chr1 161142659 161143062 -81521291 + L1M1 LINE L1 3157 3556 -4009 2360 88 3 0 chr1 161143062 161143359 -81520994 + AluSp SINE Alu 6 303 -10 1923 217 80 75 chr1 161143359 161143413 -81520940 + L1M1 LINE L1 3556 3608 -3957 2495 31 41 0 chr1 161143413 161143704 -81520649 + AluY SINE Alu 1 303 -8 1923 217 80 75 chr1 161143704 161144150 -81520203 + L1M1 LINE L1 3608 4042 -3523 1549 85 90 0 chr1 161144150 161144361 -81519992 + MER30 DNA MER1_type 1 230 0 1923 217 80 75 chr1 161144361 161144501 -81519852 + L1M1 LINE L1 4042 4180 -3385 1966 119 61 17 chr1 161144503 161144797 -81519556 + AluSx SINE Alu 3 309 -3 14211 153 32 22 chr1 161144820 161146612 -81517741 + L1PB1 LINE L1 2 1774 -5093 6498 118 23 28 chr1 161146612 161147571 -81516782 - LTR13 LTR ERVK 0 954 1 14211 153 32 22 chr1 161147571 161148197 -81516156 + L1PB1 LINE L1 1774 2392 -4475 2204 119 0 3 chr1 161148197 161148500 -81515853 - AluSg SINE Alu -8 302 1 14211 153 32 22 chr1 161148500 161149176 -81515177 + L1PB1 LINE L1 2392 3059 -3808 1530 150 119 8 chr1 161149176 161149460 -81514893 + AluSg1 SINE Alu 1 313 0 14211 153 32 22 chr1 161149460 161149906 -81514447 + L1PB1 LINE L1 3059 3499 -3368 2056 137 7 0 chr1 161149906 161150198 -81514155 + AluSp SINE Alu 1 294 -19 14211 153 32 22 chr1 161150198 161150936 -81513417 + L1PB1 LINE L1 3499 4228 -2639 2234 93 3 3 chr1 161150936 161151225 -81513128 + AluSc SINE Alu 1 289 -20 14211 153 32 22 chr1 161151225 161152924 -81511429 + L1PB1 LINE L1 4228 5908 -959 1695 170 7 0 chr1 161152924 161153224 -81511129 + AluJb SINE Alu 5 306 0 14211 153 32 22 chr1 161153224 161153270 -81511083 + L1PB1 LINE L1 5908 5952 -915 2225 113 0 7 chr1 161153270 161153579 -81510774 - AluSg SINE Alu -3 307 1 14211 153 32 22 chr1 161153579 161154356 -81509997 + L1PB1 LINE L1 5952 6829 -38 510 286 6 22 chr1 161154324 161154502 -81509851 + L1 LINE L1 3276 3450 -3412 * 1731 167 35 0 chr1 161154690 161154978 -81509375 + AluSx SINE Alu 1 298 -14 34 42 0 0 chr1 161155240 161155288 -81509065 + AT_rich Low_complexity Low_complexity 1 48 0 8884 165 41 102 chr1 161155288 161155661 -81508692 + L1 LINE L1 3471 3865 -2997 5525 100 33 16 chr1 161155661 161156428 -81507925 - LTR17 LTR ERV1 0 780 1 8884 165 41 102 chr1 161156428 161157006 -81507347 + L1 LINE L1 3865 4477 -2385 1917 148 34 0 chr1 161157006 161157304 -81507049 - AluSx SINE Alu -4 308 1 8884 165 41 102 chr1 161157304 161157737 -81506616 + L1 LINE L1 4477 4935 -1927 1608 167 23 39 chr1 161157737 161157878 -81506475 + AluJb SINE Alu 1 143 -169 2329 101 0 0 chr1 161157878 161158175 -81506178 + AluY SINE Alu 1 297 -14 1608 167 23 39 chr1 161158175 161158339 -81506014 + AluJb SINE Alu 143 301 -11 8884 165 41 102 chr1 161158339 161158636 -81505717 + L1 LINE L1 4935 5249 -1613 825 199 0 8 chr1 161158636 161158767 -81505586 + AluJo SINE Alu 5 134 -178 8884 165 41 102 chr1 161158767 161159411 -81504942 + L1 LINE L1 5249 5779 -1083 1721 162 72 0 chr1 161159417 161159707 -81504646 - AluSx SINE Alu -1 311 1 677 171 68 0 chr1 161159709 161159826 -81504527 - AluJo/FLAM SINE Alu -177 125 1 1703 166 0 11 chr1 161159839 161160116 -81504237 - AluJo SINE Alu -13 299 26 242 132 0 0 chr1 161160116 161160154 -81504199 + L1MA7 LINE L1 5938 5975 -337 2753 123 11 27 chr1 161160154 161160593 -81503760 - MER4E LTR ERV1 0 779 348 748 128 0 0 chr1 161160620 161160722 -81503631 - U6 snRNA snRNA -5 102 1 1317 119 10 10 chr1 161160727 161160928 -81503425 - MER4B LTR ERV1 -404 206 6 1664 141 56 7 chr1 161160950 161161255 -81503098 + L1MA7 LINE L1 5967 6286 -5 1187 174 0 33 chr1 161161262 161161474 -81502879 + AluJo SINE Alu 84 288 -24 4860 77 14 20 chr1 161161678 161162317 -81502036 + PABL_A LTR ERV1 26 660 0 1827 154 23 16 chr1 161162387 161162693 -81501660 - AluSx SINE Alu -4 308 1 258 261 15 15 chr1 161163345 161163410 -81500943 + MIR SINE MIR 72 136 -126 396 174 101 46 chr1 161163437 161163546 -81500807 + MIR SINE MIR 123 237 -25 2284 157 8 25 chr1 161163586 161163988 -81500365 - MER61B LTR ERV1 -29 396 2 881 109 7 36 chr1 161164139 161164276 -81500077 + LTR39 LTR ERV1 3 135 -648 1024 106 0 0 chr1 161164276 161164418 -81499935 + AluSp/q SINE Alu 169 310 -3 2077 119 50 0 chr1 161164418 161164721 -81499632 + LTR39 LTR ERV1 166 483 -300 1702 169 3 56 chr1 161164723 161164919 -81499434 + AluJo SINE Alu 3 177 -135 2154 116 10 0 chr1 161164919 161165222 -81499131 + AluSq SINE Alu 1 306 -7 1702 169 3 56 chr1 161165222 161165345 -81499008 + AluJo SINE Alu 177 305 -7 632 237 56 48 chr1 161165374 161165711 -81498642 - LTR35 LTR ERV1 0 678 350 271 225 79 22 chr1 161166260 161166349 -81498004 + L2 LINE L2 2675 2768 -546 434 262 229 9 chr1 161166738 161166952 -81497401 + MIR SINE MIR 2 262 0 484 100 0 62 chr1 161167134 161167214 -81497139 - MER1B DNA MER1_type 0 333 259 1880 217 99 79 chr1 161167215 161167442 -81496911 + MER50 LTR ERV1 12 233 -501 2191 77 3 51 chr1 161167442 161167586 -81496767 + AluSg SINE Alu 1 124 -186 2841 10 0 0 chr1 161167586 161167891 -81496462 + AluYa5 SINE Alu 1 305 -6 2191 77 3 51 chr1 161167891 161168059 -81496294 + AluSg SINE Alu 124 298 -12 1880 217 99 79 chr1 161168059 161168540 -81495813 + MER50 LTR ERV1 233 734 0 1945 132 0 4 chr1 161168540 161168813 -81495540 - MER1B DNA MER1_type -66 273 2 27 29 0 0 chr1 161169175 161169209 -81495144 + AT_rich Low_complexity Low_complexity 1 34 0 830 191 0 0 chr1 161169399 161169530 -81494823 + FLAM_A SINE Alu 1 131 -2 30 27 0 0 chr1 161169562 161169599 -81494754 + AT_rich Low_complexity Low_complexity 1 37 0 715 197 0 8 chr1 161169610 161169737 -81494616 + MER2 DNA MER2_type 1 126 -219 1315 126 61 14 chr1 161169789 161170003 -81494350 + MER2 DNA MER2_type 122 345 0 234 279 44 29 chr1 161170012 161170080 -81494273 + MER21B LTR ERV1 22 90 -773 316 216 0 0 chr1 161170115 161170166 -81494187 + MER21B LTR ERV1 46 96 -767 354 203 27 0 chr1 161170204 161170278 -81494075 + MER21B LTR ERV1 98 173 -690 2217 182 27 55 chr1 161170290 161170534 -81493819 + MER21B LTR ERV1 330 558 -305 1452 171 7 57 chr1 161170534 161170683 -81493670 - AluJb SINE Alu -28 284 156 180 0 0 0 chr1 161170683 161170703 -81493650 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1452 171 7 57 chr1 161170703 161170852 -81493501 - AluJb SINE Alu -156 156 1 2217 182 27 55 chr1 161170852 161171046 -81493307 + MER21B LTR ERV1 558 756 -107 1223 192 44 17 chr1 161171145 161171432 -81492921 + LTR10B LTR ERV1 309 547 0 235 241 114 25 chr1 161171435 161171514 -81492839 + MER21B LTR ERV1 775 860 -3 690 101 0 10 chr1 161171999 161172098 -81492255 + MER4A LTR ERV1 1 98 -566 1952 105 3 77 chr1 161172098 161172471 -81491882 + MER4A LTR ERV1 261 664 0 1861 199 75 70 chr1 161172939 161173016 -81491337 + LTR48 LTR ERV1 1 76 -568 2751 184 113 72 chr1 161173016 161173809 -81490544 - LTR1B LTR ERV1 0 826 1 1861 199 75 70 chr1 161173809 161174380 -81489973 + LTR48 LTR ERV1 76 609 -35 1209 191 61 8 chr1 161174422 161174684 -81489669 - AluJo SINE Alu -3 309 34 370 120 0 0 chr1 161174689 161174739 -81489614 + MER39B LTR ERV1 604 653 0 2212 99 23 0 chr1 161175149 161175452 -81488901 + AluSx SINE Alu 1 310 -2 1987 161 0 0 chr1 161176275 161176580 -81487773 - AluJb SINE Alu -7 305 1 1895 167 3 0 chr1 161176609 161176903 -81487450 + AluSx SINE Alu 1 295 -17 1424 163 113 0 chr1 161177359 161177645 -81486708 + AluJb SINE Alu 2 316 0 247 357 110 19 chr1 161178159 161178313 -81486040 + L2 LINE L2 343 510 -2804 288 320 101 49 chr1 161178384 161178712 -81485641 + L2 LINE L2 674 1018 -2296 311 190 0 0 chr1 161179126 161179184 -81485169 - MER58B DNA MER1_type -2 339 282 1969 167 62 57 chr1 161179240 161179436 -81484917 - MSTB LTR MaLR -23 403 209 1627 194 16 13 chr1 161179436 161179745 -81484608 - AluJb SINE Alu -2 310 1 1969 167 62 57 chr1 161179745 161179771 -81484582 - MSTB LTR MaLR -217 209 185 2086 89 3 80 chr1 161179771 161180095 -81484258 - AluSx SINE Alu -13 299 1 1969 167 62 57 chr1 161180095 161180272 -81484081 - MSTB LTR MaLR -241 185 1 951 196 143 0 chr1 161180272 161180499 -81483854 - MER58B DNA MER1_type -55 286 27 984 212 34 0 chr1 161180521 161180700 -81483653 + MER5A DNA MER1_type 5 189 0 695 217 0 36 chr1 161181766 161181904 -81482449 - FLAM_A SINE Alu 0 133 1 272 167 0 0 chr1 161182072 161182114 -81482239 + MER2 DNA MER2_type 2 43 -302 1624 109 35 0 chr1 161182162 161182392 -81481961 - THE1A LTR MaLR -1 354 117 1150 127 11 17 chr1 161182404 161182585 -81481768 - THE1C LTR MaLR -195 180 1 1318 208 10 45 chr1 161182586 161182618 -81481735 + MER2 DNA MER2_type 67 99 -246 2071 123 0 3 chr1 161182618 161182927 -81481426 + AluSq SINE Alu 1 308 0 1318 208 10 45 chr1 161182927 161183182 -81481171 + MER2 DNA MER2_type 99 345 0 211 347 61 20 chr1 161183185 161183283 -81481070 + L2 LINE L2 3158 3259 -13 2164 124 0 7 chr1 161183543 161183842 -81480511 + AluSg SINE Alu 1 297 -13 375 210 77 63 chr1 161183947 161184090 -81480263 - L1ME4a LINE L1 -247 5874 5730 1813 113 83 0 chr1 161184137 161184402 -81479951 - AluY SINE Alu -20 291 5 2067 106 26 13 chr1 161184490 161184793 -81479560 + AluSx SINE Alu 1 307 -5 800 126 0 0 chr1 161184855 161184966 -81479387 + FLAM_C SINE Alu 1 111 -32 1872 124 38 24 chr1 161185098 161185388 -81478965 - AluSc SINE Alu -15 294 1 1717 178 3 13 chr1 161185483 161185792 -81478561 + AluJb SINE Alu 5 310 -2 22 70 0 0 chr1 161185973 161186016 -81478337 + AT_rich Low_complexity Low_complexity 1 43 0 1734 173 3 33 chr1 161186306 161186612 -81477741 + AluJo SINE Alu 1 297 -15 299 297 18 18 chr1 161187027 161187192 -81477161 + L1ME3 LINE L1 4629 4793 -1353 363 107 0 22 chr1 161187192 161187427 -81476926 + AluSq SINE Alu 1 302 -1 495 339 73 49 chr1 161187430 161187980 -81476373 + L1ME3 LINE L1 4787 5322 -840 2588 152 51 5 chr1 161187980 161188389 -81475964 + MSTA LTR MaLR 1 428 0 495 339 73 49 chr1 161188389 161188892 -81475461 + L1ME3 LINE L1 5322 5884 -278 1357 235 70 83 chr1 161189073 161189350 -81475003 + L2 LINE L2 2417 2696 -617 180 0 0 0 chr1 161189350 161189370 -81474983 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2168 123 3 0 chr1 161189372 161189674 -81474679 - AluSq SINE Alu -10 303 1 1357 235 70 83 chr1 161189674 161190067 -81474286 + L2 LINE L2 2697 3082 -231 5035 171 32 28 chr1 161190091 161191100 -81473253 + L1MC2 LINE L1 5323 6335 -9 1459 183 138 112 chr1 161191197 161191272 -81473081 - L1MC4 LINE L1 -1 8041 7969 2084 143 0 0 chr1 161191272 161191579 -81472774 - AluJb SINE Alu 0 312 6 1459 183 138 112 chr1 161191579 161191985 -81472368 - L1MC4 LINE L1 -73 7969 7536 1591 155 126 11 chr1 161191985 161192263 -81472090 + AluJb SINE Alu 3 312 0 1459 183 138 112 chr1 161192263 161192432 -81471921 - L1MC4 LINE L1 -506 7536 7373 347 235 129 0 chr1 161192563 161192648 -81471705 + L2 LINE L2 3216 3311 -2 2166 90 10 23 chr1 161192958 161193259 -81471094 - L1PA11 LINE L1 0 6174 5878 37 0 0 0 chr1 161193259 161193296 -81471057 + AT_rich Low_complexity Low_complexity 1 37 0 378 0 0 0 chr1 161193319 161193361 -81470992 + (TA)n Simple_repeat Simple_repeat 2 43 0 4694 106 15 10 chr1 161193362 161194567 -81469786 - L1PA11 LINE L1 -268 5906 4697 4081 159 8 38 chr1 161194558 161194949 -81469404 + L1P LINE L1 2924 3280 -2866 * 2146 112 3 16 chr1 161194949 161195252 -81469101 + AluSx SINE Alu 1 299 -13 4081 159 8 38 chr1 161195252 161195660 -81468693 + L1P LINE L1 3280 3699 -2447 1730 163 7 17 chr1 161195690 161196002 -81468351 - AluJo SINE Alu 0 309 1 2220 125 0 3 chr1 161196206 161196518 -81467835 - AluSx SINE Alu -1 311 1 357 161 0 0 chr1 161196554 161196610 -81467743 - FRAM/FAM SINE Alu -118 57 2 1731 173 29 0 chr1 161196645 161196923 -81467430 - AluJb SINE Alu -26 286 1 1599 195 7 37 chr1 161196933 161197230 -81467123 - AluJb SINE Alu -24 288 1 2388 94 3 0 chr1 161197494 161197801 -81466552 - AluY SINE Alu -3 308 1 2323 78 6 25 chr1 161198425 161198744 -81465609 - AluSq SINE Alu 0 313 1 21 82 0 0 chr1 161198812 161198861 -81465492 + AT_rich Low_complexity Low_complexity 1 49 0 307 248 83 64 chr1 161198959 161199116 -81465237 + L2 LINE L2 3153 3312 -1 2058 135 15 122 chr1 161199989 161200480 -81463873 + L1MB3 LINE L1 5651 6103 -80 820 173 0 1 chr1 161200484 161200734 -81463619 + AluJ SINE Alu 7 289 -23 352 115 0 0 chr1 161200738 161200790 -81463563 + L1MB3 LINE L1 6087 6138 -45 657 200 0 9 chr1 161200791 161200901 -81463452 + FLAM_C SINE Alu 2 110 -33 1718 185 0 0 chr1 161200916 161201202 -81463151 - AluJb SINE Alu -26 286 1 1173 153 0 79 chr1 161201243 161201472 -81462881 + AluJo SINE Alu 1 211 -101 271 106 0 0 chr1 161201522 161201569 -81462784 + L1MB3 LINE L1 6137 6183 0 2305 112 0 3 chr1 161201590 161201903 -81462450 - AluSx SINE Alu 0 312 1 1684 196 0 10 chr1 161202400 161202706 -81461647 + AluJb SINE Alu 1 303 -9 2499 73 0 0 chr1 161202751 161203054 -81461299 + AluY SINE Alu 1 303 -8 2078 130 0 7 chr1 161203101 161203402 -81460951 + AluSx SINE Alu 1 299 -13 1691 144 4 22 chr1 161203479 161203750 -81460603 + AluJb SINE Alu 3 268 -44 200 170 43 0 chr1 161203761 161203808 -81460545 + GA-rich Low_complexity Low_complexity 5 53 0 * 788 116 0 48 chr1 161203801 161203990 -81460363 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2307 115 0 0 chr1 161204022 161204334 -81460019 + AluSx SINE Alu 1 312 0 520 286 107 32 chr1 161204571 161204851 -81459502 + MER102b DNA MER1_type 38 338 -3 2125 146 0 0 chr1 161204934 161205243 -81459110 + AluJb SINE Alu 1 309 -3 225 299 69 23 chr1 161205250 161205337 -81459016 + MIR SINE MIR 118 208 -54 2137 121 0 0 chr1 161205390 161205699 -81458654 + AluSx SINE Alu 1 309 0 203 191 24 0 chr1 161205885 161205927 -81458426 + GA-rich Low_complexity Low_complexity 1 43 0 1840 174 0 6 chr1 161206468 161206779 -81457574 - AluJb SINE Alu -3 309 1 4295 161 31 3 chr1 161207250 161207952 -81456401 - MER50 LTR ERV1 -12 722 1 293 255 106 0 chr1 161208143 161208237 -81456116 - MIR3 SINE MIR -23 185 82 2124 177 13 39 chr1 161208385 161208769 -81455584 + MLT1A2 LTR MaLR 1 374 0 25 0 0 0 chr1 161209023 161209048 -81455305 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chr1 161209073 161209104 -81455249 + AT_rich Low_complexity Low_complexity 1 31 0 1022 150 0 0 chr1 161209150 161209320 -81455033 - AluSg/x SINE Alu 0 304 135 1844 151 0 36 chr1 161209361 161209666 -81454687 - AluSx SINE Alu -18 294 1 1803 171 13 7 chr1 161209667 161209971 -81454382 - AluJb SINE Alu -6 306 1 275 227 45 38 chr1 161209976 161210108 -81454245 - L1MC5 LINE L1 -205 7756 7624 29 47 0 0 chr1 161210374 161210417 -81453936 + AT_rich Low_complexity Low_complexity 1 43 0 2083 109 10 7 chr1 161210608 161210902 -81453451 + AluSq SINE Alu 1 295 -18 2335 86 7 3 chr1 161211058 161211361 -81452992 + AluSx SINE Alu 1 304 -8 207 0 0 0 chr1 161211583 161211606 -81452747 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1003 205 5 20 chr1 161211611 161211789 -81452564 - AluJo SINE Alu 0 312 136 2501 75 0 7 chr1 161211789 161212097 -81452256 - AluY SINE Alu -5 306 1 1003 205 5 20 chr1 161212097 161212148 -81452205 - AluJo SINE Alu -176 136 86 257 301 84 56 chr1 161212876 161213019 -81451334 + MER5A DNA MER1_type 15 161 -28 * 268 273 103 67 chr1 161212891 161213056 -81451297 - MER5A DNA MER1_type -18 171 1 2162 115 0 0 chr1 161213151 161213446 -81450907 + AluSx SINE Alu 3 297 -15 24 32 0 0 chr1 161213446 161213477 -81450876 + AT_rich Low_complexity Low_complexity 1 31 0 2214 96 17 0 chr1 161213669 161213994 -81450359 + AluSp SINE Alu 12 313 0 1731 170 22 67 chr1 161214085 161214222 -81450131 + MER93b LTR ERV1 1 143 -230 1416 181 69 24 chr1 161214222 161214510 -81449843 + AluJb SINE Alu 1 301 -11 1731 170 22 67 chr1 161214510 161214743 -81449610 + MER93b LTR ERV1 143 354 -19 933 192 6 0 chr1 161214748 161214915 -81449438 + FRAM SINE Alu 1 168 -8 2736 105 11 3 chr1 161214998 161215359 -81448994 - THE1B LTR MaLR 0 364 1 241 259 89 131 chr1 161215404 161215640 -81448713 - MIR SINE MIR -31 231 6 1543 213 69 67 chr1 161215839 161216304 -81448049 - MER31B LTR ERV1 0 466 1 205 258 150 8 chr1 161216381 161216501 -81447852 + MIR SINE MIR 121 257 -5 22 35 0 0 chr1 161216520 161216549 -81447804 + AT_rich Low_complexity Low_complexity 1 29 0 719 212 0 36 chr1 161216814 161216951 -81447402 - FLAM_A SINE Alu -1 132 1 1146 315 50 23 chr1 161217275 161217713 -81446640 - LTR16A LTR ERVL 0 450 1 1977 144 20 0 chr1 161217792 161218112 -81446241 + AluSx SINE Alu 6 331 0 854 121 0 8 chr1 161218173 161218415 -81445938 + FLAM_C SINE Alu 19 259 0 812 179 8 0 chr1 161218418 161218552 -81445801 + AluJb SINE Alu 133 267 -45 279 258 0 0 chr1 161218859 161218921 -81445432 + L2 LINE L2 3247 3308 -5 320 331 29 15 chr1 161219197 161219333 -81445020 + L2 LINE L2 2898 3035 -237 211 204 20 0 chr1 161219343 161219392 -81444961 + (CA)n Simple_repeat Simple_repeat 1 50 0 2290 131 84 23 chr1 161219425 161219591 -81444762 + LTR26B LTR ERV1 28 182 -349 2192 132 0 0 chr1 161219591 161219894 -81444459 + AluSq SINE Alu 1 303 -10 2290 131 84 23 chr1 161219894 161220168 -81444185 + LTR26B LTR ERV1 182 531 0 837 219 58 100 chr1 161220263 161220351 -81444002 + MLT2D LTR ERVL 1 91 -323 1947 151 0 0 chr1 161220351 161220664 -81443689 - AluSx SINE Alu 0 313 1 837 219 58 100 chr1 161220664 161220885 -81443468 + MLT2D LTR ERVL 91 298 -116 364 85 0 0 chr1 161220880 161220927 -81443426 + MLT2D LTR ERVL 467 513 -2 * 1066 137 60 0 chr1 161221056 161221224 -81443129 - FRAM SINE Alu -2 174 1 1186 90 0 0 chr1 161221532 161221687 -81442666 + AluY SINE Alu 155 309 -2 2249 102 0 0 chr1 161222552 161222869 -81441484 + AluSq SINE Alu 1 317 0 1740 149 0 30 chr1 161222881 161223199 -81441154 + AluSx SINE Alu 1 309 0 24 77 0 0 chr1 161223209 161223261 -81441092 + AT_rich Low_complexity Low_complexity 1 52 0 2131 89 0 36 chr1 161223298 161223600 -81440753 - AluY SINE Alu -20 291 1 615 168 10 0 chr1 161223878 161223979 -81440374 + U13 snRNA snRNA 1 102 -2 1879 141 38 0 chr1 161224923 161225213 -81439140 + AluSx SINE Alu 1 301 -11 460 158 21 0 chr1 161225246 161225341 -81439012 + GA-rich Low_complexity Low_complexity 4 100 0 2518 35 0 38 chr1 161225519 161225835 -81438518 - AluY SINE Alu -7 304 1 1685 170 0 42 chr1 161225918 161226229 -81438124 + AluJo SINE Alu 1 298 -14 1197 188 0 44 chr1 161226402 161226631 -81437722 - AluJo SINE Alu -83 229 11 260 273 192 55 chr1 161226894 161227165 -81437188 + L2 LINE L2 1036 1343 -1971 198 0 0 0 chr1 161228079 161228101 -81436252 + (T)n Simple_repeat Simple_repeat 1 22 0 648 292 35 26 chr1 161229097 161229323 -81435030 - MIR SINE MIR -19 243 16 440 219 15 58 chr1 161229608 161229745 -81434608 + MIR SINE MIR 124 254 -8 643 222 8 0 chr1 161230472 161230598 -81433755 - FLAM_A SINE Alu -6 127 1 192 313 60 0 chr1 161231036 161231103 -81433250 + L2 LINE L2 3200 3270 -2 284 281 90 11 chr1 161231659 161231748 -81432605 - MIR SINE MIR -150 112 17 358 172 145 69 chr1 161231773 161231892 -81432461 + MER113 DNA MER1_type? 1 134 -387 2297 95 3 0 chr1 161231892 161232188 -81432165 - AluSg SINE Alu -13 297 1 358 172 145 69 chr1 161232188 161232213 -81432140 + MER113 DNA MER1_type? 134 156 -365 236 283 17 0 chr1 161232269 161232329 -81432024 + MER113 DNA MER1_type? 454 514 -7 224 257 90 97 chr1 161232837 161232981 -81431372 + MIR SINE MIR 47 189 -73 377 358 119 0 chr1 161233264 161233398 -81430955 + MER91A DNA MER1_type 1 150 -46 21 0 0 0 chr1 161233691 161233712 -81430641 + AT_rich Low_complexity Low_complexity 1 21 0 1492 171 55 34 chr1 161234385 161234677 -81429676 + 7SLRNA srpRNA srpRNA 4 301 -19 2061 100 14 17 chr1 161234700 161235021 -81429332 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 161235030 161235051 -81429302 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 23 0 0 0 chr1 161235159 161235182 -81429171 + AT_rich Low_complexity Low_complexity 1 23 0 748 209 68 23 chr1 161235305 161235482 -81428871 + AluJo SINE Alu 119 303 -9 1946 124 60 0 chr1 161235510 161235793 -81428560 + AluSx SINE Alu 1 300 -12 408 343 81 24 chr1 161235836 161236046 -81428307 - MIR SINE MIR 0 262 41 374 375 23 0 chr1 161236483 161236611 -81427742 - L3 LINE CR1 -19 1558 1428 455 314 243 17 chr1 161237030 161237450 -81426903 - L3 LINE CR1 -438 1139 625 1639 175 70 12 chr1 161237785 161238128 -81426225 - MLT1A2 LTR MaLR -11 363 1 2114 129 10 0 chr1 161238171 161238474 -81425879 - AluSx SINE Alu -6 306 1 540 187 9 9 chr1 161238491 161238598 -81425755 - L1MC4 LINE L1 -33 8009 7903 342 0 0 0 chr1 161238746 161238784 -81425569 + (TG)n Simple_repeat Simple_repeat 2 39 0 1607 161 47 4 chr1 161238784 161239058 -81425295 - AluJb SINE Alu -22 290 5 402 270 63 9 chr1 161239272 161239383 -81424970 + MIR SINE MIR 22 138 -124 1868 163 10 13 chr1 161239427 161239740 -81424613 - AluJb SINE Alu 0 312 1 1600 177 0 41 chr1 161239804 161240098 -81424255 - AluJo SINE Alu -30 282 1 1281 238 74 6 chr1 161240192 161240528 -81423825 - MLT1A1 LTR MaLR -2 363 5 1341 185 40 50 chr1 161240778 161241081 -81423272 - AluJo SINE Alu -12 300 1 269 204 301 19 chr1 161241179 161241282 -81423071 + L2 LINE L2 3137 3268 -4 2167 90 19 42 chr1 161241480 161241790 -81422563 + AluSx SINE Alu 1 303 -9 1038 180 33 5 chr1 161242375 161242586 -81421767 - AluJo SINE Alu -15 297 81 1643 158 14 14 chr1 161242871 161243162 -81421191 - AluJb SINE Alu -14 298 8 1506 157 0 8 chr1 161243166 161243402 -81420951 - AluJb SINE Alu -78 234 1 548 201 60 67 chr1 161243924 161244058 -81420295 - FLAM_A SINE Alu 0 133 1 184 241 69 17 chr1 161244104 161244162 -81420191 + L2 LINE L2 2798 2858 -456 644 221 70 35 chr1 161244215 161244387 -81419966 - MER5B DNA MER1_type 0 178 1 277 272 251 31 chr1 161244406 161244601 -81419752 + L2 LINE L2 3026 3263 -50 1918 139 11 0 chr1 161244712 161244993 -81419360 - AluSx SINE Alu -28 284 1 2328 110 0 0 chr1 161245213 161245512 -81418841 + AluSx SINE Alu 1 299 -13 3579 212 117 57 chr1 161245512 161245679 -81418674 - L1ME LINE L1 -583 5652 5497 2727 104 11 14 chr1 161245679 161246044 -81418309 - THE1B LTR MaLR 0 364 1 3579 212 117 57 chr1 161246044 161246998 -81417355 - L1ME LINE L1 -738 5497 4407 2480 83 0 0 chr1 161246998 161247299 -81417054 - AluSp SINE Alu -12 301 1 3579 212 117 57 chr1 161247299 161247762 -81416591 - L1ME LINE L1 -1828 4407 3974 1794 141 25 7 chr1 161247764 161248048 -81416305 + MER7A DNA MER2_type 4 290 -56 870 142 0 0 chr1 161248048 161248168 -81416185 - AluSq/x SINE Alu -193 120 1 644 299 110 4 chr1 161248169 161248658 -81415695 - L1MEc LINE L1 -4753 1643 1103 279 0 0 0 chr1 161248659 161248690 -81415663 + (TG)n Simple_repeat Simple_repeat 2 32 0 315 89 0 0 chr1 161248695 161248740 -81415613 - MER72 LTR ERV1 -31 691 647 364 137 14 0 chr1 161249007 161249080 -81415273 - L1MEc LINE L1 -5662 734 661 514 196 137 10 chr1 161249084 161249186 -81415167 + FLAM_A SINE Alu 1 115 -18 596 216 9 87 chr1 161249210 161249300 -81415053 - L1MEc LINE L1 -5724 672 577 2019 146 0 10 chr1 161249300 161249595 -81414758 + AluSx SINE Alu 1 292 -20 596 216 9 87 chr1 161249595 161249722 -81414631 - L1MEc LINE L1 -5819 577 472 3288 183 32 5 chr1 161249731 161250469 -81413884 - L1 LINE L1 -1596 4550 3793 2391 90 3 0 chr1 161250846 161251156 -81413197 - AluY SINE Alu 0 311 1 230 206 47 131 chr1 161251486 161251593 -81412760 - MER5B DNA MER1_type 0 178 92 483 252 67 15 chr1 161251635 161251770 -81412583 - MER5A DNA MER1_type 0 189 48 2529 74 3 0 chr1 161251812 161252122 -81412231 - AluSx SINE Alu -1 311 1 238 250 62 62 chr1 161252141 161252285 -81412068 - L2 LINE L2 -1802 1512 1369 235 281 123 18 chr1 161252411 161252525 -81411828 - L3 LINE CR1 -821 756 631 189 0 0 0 chr1 161253165 161253186 -81411167 + (CAAAAA)n Simple_repeat Simple_repeat 1 21 0 186 71 0 0 chr1 161254532 161254560 -81409793 + (TG)n Simple_repeat Simple_repeat 2 29 0 24 0 0 0 chr1 161254825 161254849 -81409504 + AT_rich Low_complexity Low_complexity 1 24 0 255 273 71 40 chr1 161255464 161255563 -81408790 + L2 LINE L2 3199 3300 -13 339 25 0 0 chr1 161256223 161256263 -81408090 + (TG)n Simple_repeat Simple_repeat 2 41 0 201 133 0 44 chr1 161257252 161257297 -81407056 + (TTAAA)n Simple_repeat Simple_repeat 2 44 0 426 333 163 0 chr1 161257965 161258112 -81406241 + MER5A DNA MER1_type 9 179 -10 514 263 60 32 chr1 161258301 161258552 -81405801 - Charlie7 DNA MER1_type -1889 723 466 902 233 197 53 chr1 161258568 161259035 -81405318 - MLT1F LTR MaLR -6 536 3 617 252 181 43 chr1 161259052 161259401 -81404952 - Charlie7 DNA MER1_type -2214 398 2 272 218 11 58 chr1 161259834 161259921 -81404432 + Charlie4a DNA MER1_type 39 121 -387 297 230 54 0 chr1 161259932 161260006 -81404347 - MLT1F LTR MaLR -463 79 2 670 186 99 87 chr1 161260074 161260397 -81403956 + Charlie4a DNA MER1_type 182 508 0 1881 163 0 25 chr1 161260455 161260774 -81403579 - AluSx SINE Alu -1 311 1 2125 136 0 3 chr1 161260857 161261152 -81403201 - AluSx SINE Alu -15 297 4 277 272 99 6 chr1 161261157 161261319 -81403034 - L1MC5 LINE L1 -168 7793 7617 321 242 75 88 chr1 161261334 161261574 -81402779 - L1MC5 LINE L1 -393 7568 7332 583 155 93 0 chr1 161261787 161261884 -81402469 - U6 snRNA snRNA 0 107 2 2024 114 0 0 chr1 161261961 161262234 -81402119 - AluSx SINE Alu -39 273 1 2154 111 3 20 chr1 161262769 161263075 -81401278 - AluSc SINE Alu -8 301 1 31 0 0 0 chr1 161264073 161264104 -81400249 + AT_rich Low_complexity Low_complexity 1 31 0 2245 100 0 13 chr1 161264459 161264760 -81399593 + AluSx SINE Alu 1 297 -15 2415 92 0 0 chr1 161265725 161266019 -81398334 + AluSx SINE Alu 1 294 -18 1993 147 0 0 chr1 161268310 161268609 -81395744 - AluSx SINE Alu -13 299 1 2163 110 3 0 chr1 161268777 161269077 -81395276 - AluSg SINE Alu -9 301 1 2383 99 0 0 chr1 161269100 161269403 -81394950 - AluSx SINE Alu -8 304 2 1831 163 10 0 chr1 161269451 161269739 -81394614 + AluSx SINE Alu 6 296 -16 312 293 0 30 chr1 161269939 161270038 -81394315 + L2 LINE L2 1338 1433 -1881 1343 265 128 88 chr1 161270136 161270258 -81394095 + L2 LINE L2 1675 1791 -1523 2380 69 0 10 chr1 161270258 161270562 -81393791 - AluY SINE Alu -10 301 1 1343 265 128 88 chr1 161270562 161270795 -81393558 + L2 LINE L2 1791 2013 -1301 1441 154 83 0 chr1 161270795 161271061 -81393292 - AluJo SINE Alu -24 288 1 1343 265 128 88 chr1 161271061 161271749 -81392604 + L2 LINE L2 2013 2761 -553 2334 213 164 31 chr1 161271997 161272215 -81392138 + L1ME2 LINE L1 5018 5206 -958 1951 139 26 13 chr1 161272215 161272517 -81391836 - AluJb SINE Alu -6 306 1 2334 213 164 31 chr1 161272517 161273308 -81391045 + L1ME2 LINE L1 5206 6151 -13 267 301 12 12 chr1 161273358 161273441 -81390912 - MIR SINE MIR -113 149 67 231 225 0 0 chr1 161274647 161274718 -81389635 + GA-rich Low_complexity Low_complexity 2 72 0 218 177 0 32 chr1 161274732 161274794 -81389559 + GA-rich Low_complexity Low_complexity 4 63 0 2186 106 0 0 chr1 161275609 161275893 -81388460 - AluSc SINE Alu -25 284 1 21 36 0 0 chr1 161276044 161276072 -81388281 + AT_rich Low_complexity Low_complexity 1 28 0 557 216 0 0 chr1 161276594 161276696 -81387657 - FLAM_A SINE Alu -40 102 1 198 103 0 0 chr1 161278012 161278041 -81386312 + (CAG)n Simple_repeat Simple_repeat 1 29 0 1509 190 3 68 chr1 161279686 161279862 -81384491 - AluJb SINE Alu -21 291 142 2061 64 0 0 chr1 161279862 161280112 -81384241 - AluY SINE Alu -2 309 60 1509 190 3 68 chr1 161280112 161280246 -81384107 - AluJb SINE Alu -170 142 1 1917 141 26 3 chr1 161280673 161280977 -81383376 - AluJb SINE Alu -1 311 1 2364 54 10 14 chr1 161280979 161281276 -81383077 - AluSp SINE Alu -17 296 1 591 189 13 33 chr1 161281284 161281437 -81382916 - L1MB1 LINE L1 0 6168 6019 1407 172 70 4 chr1 161281458 161281805 -81382548 - L1MB1 LINE L1 -158 6010 5697 23 0 0 0 chr1 161284685 161284708 -81379645 + AT_rich Low_complexity Low_complexity 1 23 0 2364 88 0 0 chr1 161284732 161285028 -81379325 - AluY SINE Alu -12 299 4 715 77 20 6 chr1 161285063 161285312 -81379041 + AluY SINE Alu 1 299 -12 441 242 317 0 chr1 161285356 161285542 -81378811 + MIR SINE MIR 2 246 -16 1381 186 54 62 chr1 161285692 161286083 -81378270 - MSTC LTR MaLR -7 421 40 2131 96 0 48 chr1 161286083 161286395 -81377958 - AluSx SINE Alu -15 297 1 1381 186 54 62 chr1 161286395 161286435 -81377918 - MSTC LTR MaLR -388 40 1 351 0 0 0 chr1 161287681 161287720 -81376633 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 441 116 87 0 chr1 161288493 161288562 -81375791 + MER5A DNA MER1_type 1 75 -114 1619 176 18 4 chr1 161288565 161288740 -81375613 - AluSx SINE Alu 0 306 124 207 0 0 0 chr1 161288740 161288763 -81375590 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1619 176 18 4 chr1 161288763 161288889 -81375464 - AluSx SINE Alu -182 124 1 1119 113 25 0 chr1 161288916 161289075 -81375278 + AluSp SINE Alu 1 163 -150 2110 128 0 28 chr1 161289605 161289924 -81374429 - AluSx SINE Alu -2 310 1 1923 130 0 11 chr1 161289963 161290240 -81374113 - AluSx SINE Alu -38 274 1 1223 140 67 0 chr1 161290831 161291024 -81373329 - AluJb SINE Alu -16 296 91 23 54 0 0 chr1 161291137 161291174 -81373179 + AT_rich Low_complexity Low_complexity 1 37 0 548 230 0 0 chr1 161291189 161291302 -81373051 - AluJb SINE Alu -193 119 7 1887 174 3 0 chr1 161291546 161291833 -81372520 - AluSx SINE Alu -24 288 1 36469 77 17 7 chr1 161292440 161298527 -81365826 - L1PA6 LINE L1 0 6154 11 233 135 162 40 chr1 161298771 161298845 -81365508 - MER46C DNA MER2_type -23 315 233 441 323 21 0 chr1 161299317 161299751 -81364602 + (CCCCAG)n Simple_repeat Simple_repeat 1 443 0 363 133 0 80 chr1 161299768 161299881 -81364472 + (CCCCAG)n Simple_repeat Simple_repeat 2 105 0 10484 137 137 20 chr1 161300374 161301482 -81362871 + Tigger1 DNA MER2_type 26 1003 -1415 2365 97 10 0 chr1 161301482 161301792 -81362561 - AluSq SINE Alu 0 313 1 10484 137 137 20 chr1 161301792 161302825 -81361528 + Tigger1 DNA MER2_type 1003 2418 0 1277 192 46 80 chr1 161303132 161303434 -81360919 + AluJb SINE Alu 1 292 -20 578 224 60 8 chr1 161303444 161303578 -81360775 - MER5A DNA MER1_type -18 171 31 2555 266 167 20 chr1 161303830 161305135 -81359218 - L2 LINE L2 0 3313 1815 1607 171 30 12 chr1 161305148 161305481 -81358872 + MER2 DNA MER2_type 7 345 0 187 158 0 53 chr1 161305501 161305539 -81358814 - L2 LINE L2 -1539 1775 1740 193 265 44 55 chr1 161305601 161305714 -81358639 - MER5A DNA MER1_type -44 134 27 1597 116 194 10 chr1 161306532 161306826 -81357527 - MER7A DNA MER2_type 0 346 1 202 353 110 22 chr1 161307067 161307203 -81357150 + L2 LINE L2 2797 2944 -370 2159 110 3 0 chr1 161307425 161307717 -81356636 - AluSg SINE Alu -17 293 1 1866 149 35 0 chr1 161309876 161310165 -81354188 + AluSx SINE Alu 1 299 -13 192 338 38 12 chr1 161310964 161311044 -81353309 - MIR3 SINE MIR -45 163 82 24 67 0 0 chr1 161311542 161311587 -81352766 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr1 161311815 161311845 -81352508 + AT_rich Low_complexity Low_complexity 1 30 0 483 285 146 13 chr1 161312859 161313017 -81351336 + MER5A DNA MER1_type 11 189 0 22 0 0 0 chr1 161314110 161314132 -81350221 + AT_rich Low_complexity Low_complexity 1 22 0 772 156 8 23 chr1 161314132 161314260 -81350093 - FLAM_C SINE Alu -7 126 1 678 225 70 11 chr1 161314956 161315143 -81349210 + MER6B DNA MER2_type 1 198 -12 2388 69 10 10 chr1 161315642 161315948 -81348405 - AluSg SINE Alu -4 306 1 296 201 89 11 chr1 161316114 161316293 -81348060 + Charlie5 DNA MER1_type 2371 2563 -49 415 159 0 0 chr1 161317203 161317266 -81347087 - AluJ/FLAM SINE Alu -249 63 1 1313 182 17 9 chr1 161318665 161318896 -81345457 - AluJo SINE Alu -15 297 65 1951 130 3 59 chr1 161319743 161320067 -81344286 - AluJb SINE Alu -6 306 1 340 316 122 10 chr1 161320067 161320242 -81344111 + L1ME LINE L1 5547 5748 -373 1491 174 93 4 chr1 161320242 161320501 -81343852 + AluJo SINE Alu 1 282 -30 340 316 122 10 chr1 161320501 161320521 -81343832 + L1ME LINE L1 5748 5764 -357 1992 122 33 13 chr1 161320557 161320860 -81343493 + AluSx SINE Alu 1 309 -3 317 333 107 12 chr1 161320983 161321151 -81343202 - L1ME LINE L1 -483 5638 5455 278 299 116 27 chr1 161322465 161322612 -81341741 - MIR SINE MIR 0 262 103 432 292 65 11 chr1 161323245 161323430 -81340923 + MER117 DNA MER1_type 1 195 -2 5191 137 109 35 chr1 161324413 161324949 -81339404 - Tigger3b DNA MER2_type -1816 1212 717 1640 169 37 3 chr1 161324949 161325244 -81339109 - AluJo SINE Alu -7 305 1 5191 137 109 35 chr1 161325244 161325836 -81338517 - Tigger3b DNA MER2_type -2311 717 1 1655 159 4 19 chr1 161326777 161327048 -81337305 - AluJb SINE Alu -45 267 1 1694 126 56 53 chr1 161327777 161328035 -81336318 - MER46B DNA MER2_type -2497 234 98 2256 97 17 3 chr1 161328035 161328215 -81336138 - AluSq SINE Alu -9 304 117 186 71 0 0 chr1 161328215 161328243 -81336110 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2256 97 17 3 chr1 161328243 161328360 -81335993 - AluSq SINE Alu -196 117 3 1694 126 56 53 chr1 161328360 161328459 -81335894 - MER46B DNA MER2_type -2633 98 1 2158 91 0 25 chr1 161328515 161328857 -81335496 - AluSc SINE Alu 0 335 1 1274 151 107 0 chr1 161329940 161330145 -81334208 - AluJo SINE Alu -9 303 77 22 80 0 0 chr1 161330577 161330627 -81333726 + AT_rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr1 161331279 161331301 -81333052 + (T)n Simple_repeat Simple_repeat 1 22 0 243 125 0 0 chr1 161331758 161331798 -81332555 + (T)n Simple_repeat Simple_repeat 1 40 0 192 77 0 0 chr1 161331945 161331971 -81332382 + (T)n Simple_repeat Simple_repeat 1 26 0 288 53 0 0 chr1 161335219 161335257 -81329096 + (TA)n Simple_repeat Simple_repeat 1 38 0 1031 98 0 0 chr1 161335561 161335694 -81328659 + AluSq/x SINE Alu 1 133 -180 2163 109 7 16 chr1 161335709 161336013 -81328340 + AluSq SINE Alu 1 301 -12 1506 98 0 0 chr1 161336168 161336362 -81327991 + AluSx SINE Alu 1 194 -118 886 109 0 0 chr1 161336737 161336856 -81327497 - AluJb SINE Alu -193 119 1 23 0 0 0 chr1 161338954 161338977 -81325376 + AT_rich Low_complexity Low_complexity 1 23 0 379 282 181 13 chr1 161339269 161339418 -81324935 - MIR SINE MIR -88 174 1 12821 130 58 22 chr1 161339443 161340842 -81323511 + Tigger1 DNA MER2_type 1 1348 -1070 2121 112 0 20 chr1 161340842 161341137 -81323216 + AluSg SINE Alu 1 289 -21 12821 130 58 22 chr1 161341137 161341853 -81322500 + Tigger1 DNA MER2_type 1348 2210 -208 2411 77 0 0 chr1 161341853 161342151 -81322202 + AluSp SINE Alu 1 298 -15 12821 130 58 22 chr1 161342151 161342367 -81321986 + Tigger1 DNA MER2_type 2210 2417 -1 3840 52 25 2 chr1 161342416 161342895 -81321458 + LTR2B LTR ERV1 1 490 0 6014 89 7 30 chr1 161342895 161343818 -81320535 + Harlequin LTR ERV1 1 901 -5995 * 6360 58 29 14 chr1 161343803 161344791 -81319562 + Harlequin LTR ERV1 1572 2574 -4322 * 22454 116 17 7 chr1 161344790 161347345 -81317008 + Harlequin LTR ERV1 3352 5950 -946 198 0 0 0 chr1 161347345 161347367 -81316986 + (CA)n Simple_repeat Simple_repeat 1 22 0 22454 116 17 7 chr1 161347367 161348323 -81316030 + Harlequin LTR ERV1 5950 6896 0 3558 72 36 2 chr1 161348323 161348797 -81315556 + LTR2B LTR ERV1 1 490 0 2100 114 0 7 chr1 161348797 161349087 -81315266 + AluSg SINE Alu 15 302 -8 216 303 124 0 chr1 161349095 161349184 -81315169 + MIR SINE MIR 97 196 -66 2261 123 34 31 chr1 161349804 161350161 -81314192 - THE1B LTR MaLR -6 358 1 773 258 74 70 chr1 161350178 161350380 -81313973 - LTR16A LTR ERVL -29 421 221 2356 70 0 13 chr1 161350380 161350692 -81313661 - AluY SINE Alu -3 308 1 773 258 74 70 chr1 161350692 161350892 -81313461 - LTR16A LTR ERVL -229 221 17 250 143 0 0 chr1 161351048 161351097 -81313256 - MERVL LTR ERVL -202 5283 5235 451 335 60 18 chr1 161351267 161351548 -81312805 - MERVL LTR ERVL -686 5078 4786 368 139 29 0 chr1 161351561 161351640 -81312713 - MLT1F LTR MaLR -2 565 480 816 137 0 8 chr1 161351640 161351771 -81312582 - AluJb SINE Alu -181 131 2 1256 273 91 39 chr1 161351771 161352233 -81312120 - MLT1F LTR MaLR -56 486 1 451 350 12 29 chr1 161352239 161352368 -81311985 - MERVL LTR ERVL -836 4649 4524 1909 178 87 6 chr1 161352368 161352734 -81311619 - MSTD LTR MaLR 0 396 1 451 350 12 29 chr1 161352734 161352850 -81311503 - MERVL LTR ERVL -961 4524 4408 927 330 66 17 chr1 161352913 161353382 -81310971 - MERVL LTR ERVL -1821 3943 3452 1117 246 36 41 chr1 161353488 161353870 -81310483 - MERVL LTR ERVL -1905 3091 2844 1573 304 75 55 chr1 161353874 161354034 -81310319 - MERVL LTR ERVL -2498 2498 2343 1982 104 0 24 chr1 161354034 161354350 -81310003 - AluSx SINE Alu 0 309 1 1573 304 75 55 chr1 161354350 161354517 -81309836 - MERVL LTR ERVL -2653 2343 2181 2086 95 0 14 chr1 161354517 161354831 -81309522 + AluSq SINE Alu 3 312 0 1573 304 75 55 chr1 161354831 161355231 -81309122 - MERVL LTR ERVL -2815 2181 1753 923 315 66 10 chr1 161355272 161355518 -81308835 - MERVL LTR ERVL -4250 746 515 1761 138 46 11 chr1 161355518 161355801 -81308552 - AluJo SINE Alu -14 298 6 923 315 66 10 chr1 161355801 161356162 -81308191 - MERVL LTR ERVL -4481 515 78 1420 251 19 36 chr1 161356252 161356666 -81307687 - LTR16A LTR ERVL -18 432 26 223 318 48 0 chr1 161356679 161356742 -81307611 - L2 LINE L2 -27 3286 3221 5033 233 126 48 chr1 161356762 161357403 -81306950 - L2 LINE L2 -243 3070 2480 4099 28 38 0 chr1 161357403 161357875 -81306478 + LTR2B LTR ERV1 1 490 0 5033 233 126 48 chr1 161357875 161357907 -81306446 - L2 LINE L2 -833 2480 2452 2018 117 3 0 chr1 161357907 161358228 -81306125 + AluSq SINE Alu 1 322 0 2087 131 0 3 chr1 161358229 161358542 -81305811 + AluSx SINE Alu 1 312 0 5033 233 126 48 chr1 161358542 161358736 -81305617 - L2 LINE L2 -861 2452 2275 2648 133 188 25 chr1 161358736 161359264 -81305089 + LTR18B LTR ERVL 1 614 0 5033 233 126 48 chr1 161359264 161360255 -81304098 - L2 LINE L2 -1038 2275 1059 2074 109 0 0 chr1 161360531 161360845 -81303508 - AluSx SINE Alu 0 316 3 1747 153 61 0 chr1 161361538 161361832 -81302521 + AluSx SINE Alu 1 312 0 1072 92 122 6 chr1 161361912 161362037 -81302316 + MLT2A1 LTR ERVL 262 412 -32 271 78 39 0 chr1 161362037 161362088 -81302265 + (TA)n Simple_repeat Simple_repeat 1 53 0 1072 92 122 6 chr1 161362088 161362126 -81302227 + MLT2A1 LTR ERVL 412 444 0 4456 126 55 35 chr1 161362163 161362732 -81301621 + MER4E LTR ERV1 1 590 -189 2413 62 7 0 chr1 161362732 161363039 -81301314 - AluSc SINE Alu 0 309 1 4456 126 55 35 chr1 161363039 161363233 -81301120 + MER4E LTR ERV1 590 779 0 2495 50 0 0 chr1 161363346 161363646 -81300707 - AluY SINE Alu -11 300 1 734 111 0 0 chr1 161363710 161363809 -81300544 + FRAM SINE Alu 50 148 -28 22 35 0 0 chr1 161363821 161363850 -81300503 + AT_rich Low_complexity Low_complexity 1 29 0 444 246 61 0 chr1 161363890 161364004 -81300349 - MIR SINE MIR -75 187 67 412 322 125 7 chr1 161364754 161364906 -81299447 + MIR SINE MIR 23 192 -70 1334 158 123 11 chr1 161364918 161365178 -81299175 + AluSc SINE Alu 1 289 -20 284 269 32 11 chr1 161365466 161365559 -81298794 + MIR SINE MIR 80 174 -88 1780 137 0 42 chr1 161366240 161366407 -81297946 - AluJb SINE Alu -18 294 121 234 0 0 0 chr1 161366407 161366433 -81297920 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1801 74 46 49 chr1 161366434 161366718 -81297635 - AluY SINE Alu -28 283 1 1780 137 0 42 chr1 161366718 161366855 -81297498 - AluJb SINE Alu -190 122 1 412 313 60 20 chr1 161366857 161367058 -81297295 + Charlie7 DNA MER1_type 479 687 -1925 1955 158 3 0 chr1 161368042 161368353 -81296000 - AluJo SINE Alu 0 312 1 226 215 97 43 chr1 161369400 161369493 -81294860 + LTR48B LTR ERV1 451 548 -96 847 242 37 0 chr1 161369700 161369890 -81294463 - MER3 DNA MER1_type 0 209 13 2092 126 3 0 chr1 161369892 161370194 -81294159 + AluSx SINE Alu 1 303 -9 604 218 85 96 chr1 161370346 161370493 -81293860 - L2 LINE L2 -1 3312 3168 1612 179 6 16 chr1 161370493 161370805 -81293548 + AluJb SINE Alu 3 311 -1 604 218 85 96 chr1 161370805 161370928 -81293425 - L2 LINE L2 -145 3168 3045 2198 138 11 17 chr1 161370928 161371284 -81293069 - THE1A LTR MaLR 0 355 2 2632 84 6 3 chr1 161371285 161371631 -81292722 - THE1A-int LTR MaLR 0 1580 1234 2805 251 82 41 chr1 161371633 161372248 -81292105 - L2 LINE L2 -265 3048 2460 1326 192 59 14 chr1 161372248 161372534 -81291819 + AluJo SINE Alu 3 301 -11 2805 251 82 41 chr1 161372534 161372817 -81291536 - L2 LINE L2 -853 2460 2098 2061 113 0 0 chr1 161372817 161373101 -81291252 + AluSq SINE Alu 21 304 -9 2805 251 82 41 chr1 161373101 161373207 -81291146 - L2 LINE L2 -1215 2098 1998 1796 137 98 49 chr1 161373479 161373541 -81290812 + MLT1B LTR MaLR 1 59 -331 2004 131 3 10 chr1 161373541 161373846 -81290507 - AluSx SINE Alu -9 303 1 1796 137 98 49 chr1 161373846 161374109 -81290244 + MLT1B LTR MaLR 59 342 -48 682 121 0 10 chr1 161374109 161374208 -81290145 + MER4A LTR ERV1 1 98 -566 2011 125 183 12 chr1 161374208 161374553 -81289800 + MER4A LTR ERV1 261 664 0 241 196 20 0 chr1 161374553 161374604 -81289749 + MLT1B LTR MaLR 339 390 0 2101 116 0 3 chr1 161374701 161375003 -81289350 + AluSx SINE Alu 1 301 -11 1238 109 0 0 chr1 161375235 161375410 -81288943 + AluSg/x SINE Alu 131 305 -7 2036 107 10 3 chr1 161375661 161375950 -81288403 + AluSg SINE Alu 1 291 -19 774 154 16 0 chr1 161376291 161376414 -81287939 + AluJb SINE Alu 1 125 -187 516 197 68 0 chr1 161376546 161376663 -81287690 + L1MB3 LINE L1 6052 6176 -7 2408 78 0 0 chr1 161376765 161377073 -81287280 + AluY SINE Alu 1 308 -3 234 0 0 0 chr1 161377251 161377277 -81287076 + (CA)n Simple_repeat Simple_repeat 2 27 0 791 280 20 10 chr1 161378760 161378993 -81285360 + MIR SINE MIR 10 241 -21 989 165 0 0 chr1 161379350 161379508 -81284845 - AluJb SINE Alu -24 288 131 2288 91 0 0 chr1 161379588 161379884 -81284469 - AluSx SINE Alu -16 296 1 2002 121 0 7 chr1 161380783 161381072 -81283281 + AluSq SINE Alu 1 287 -26 357 219 62 67 chr1 161381102 161381280 -81283073 + L1MC5 LINE L1 7749 7925 -36 1061 141 0 34 chr1 161381462 161381639 -81282714 + FRAM SINE Alu 1 163 -13 1923 145 26 0 chr1 161381641 161381945 -81282408 + AluSx SINE Alu 1 312 0 808 120 24 8 chr1 161381950 161382075 -81282278 + FLAM_C SINE Alu 12 138 -5 1697 151 7 4 chr1 161382423 161382702 -81281651 + AluJb SINE Alu 1 280 -32 2803 152 42 20 chr1 161382750 161382827 -81281526 - MER74A LTR ERVL -5 553 479 2059 157 51 0 chr1 161382827 161383202 -81281151 + L1MC1 LINE L1 5939 6332 -1 2803 152 42 20 chr1 161383202 161383665 -81280688 - MER74A LTR ERVL -79 479 1 1934 139 3 7 chr1 161384302 161384612 -81279741 + AluJo SINE Alu 1 309 -3 197 288 34 0 chr1 161384771 161384830 -81279523 - L2 LINE L2 -26 3246 3186 2205 106 7 0 chr1 161385663 161385965 -81278388 + AluSg SINE Alu 2 305 -5 21 0 0 0 chr1 161386248 161386269 -81278084 + AT_rich Low_complexity Low_complexity 1 21 0 723 233 121 5 chr1 161386722 161386928 -81277425 - MIR SINE MIR -8 254 25 408 265 139 30 chr1 161386963 161387129 -81277224 + LTR41 LTR ERVL 1 184 -589 308 242 6 0 chr1 161387542 161387622 -81276731 + LTR41 LTR ERVL 696 794 -1 401 265 10 0 chr1 161388161 161388259 -81276094 + MIR SINE MIR 38 136 -72 2351 88 0 0 chr1 161388461 161388766 -81275587 - AluSg SINE Alu -5 305 1 2292 97 3 0 chr1 161389215 161389524 -81274829 + AluSg SINE Alu 1 310 0 2141 91 3 33 chr1 161389869 161390176 -81274177 + AluSx SINE Alu 1 298 -14 521 314 5 5 chr1 161390301 161390492 -81273861 + LTR16C LTR ERVL 277 467 -24 302 248 99 25 chr1 161390549 161390670 -81273683 + L1MCa LINE L1 1911 2040 -4386 2050 118 3 0 chr1 161390670 161390958 -81273395 - AluSx SINE Alu -23 289 1 215 170 21 0 chr1 161390991 161391038 -81273315 + (TA)n Simple_repeat Simple_repeat 1 48 0 2116 105 3 0 chr1 161391498 161391784 -81272569 + AluSq SINE Alu 14 300 -13 477 252 22 15 chr1 161391812 161391947 -81272406 + MIR3 SINE MIR 58 193 -15 215 79 26 0 chr1 161392169 161392207 -81272146 + (CA)n Simple_repeat Simple_repeat 2 40 0 320 289 190 8 chr1 161392308 161392429 -81271924 + MIR3 SINE MIR 52 194 -14 282 321 71 0 chr1 161392455 161392567 -81271786 - MIR SINE MIR -57 205 86 1130 251 67 65 chr1 161392672 161393209 -81271144 - L1MC4 LINE L1 -17 8025 7488 282 56 0 0 chr1 161394896 161394932 -81269421 + (CA)n Simple_repeat Simple_repeat 2 37 0 332 200 107 0 chr1 161394989 161395064 -81269289 - L2 LINE L2 -1 3271 3189 1485 181 146 17 chr1 161395310 161395720 -81268633 - Charlie4a DNA MER1_type -45 463 1 260 329 0 0 chr1 161396260 161396330 -81268023 - MIR SINE MIR -104 104 35 389 290 9 0 chr1 161396912 161397019 -81267334 - MIR SINE MIR -68 140 33 337 254 187 22 chr1 161397758 161397892 -81266461 + L2 LINE L2 3114 3269 -3 1665 81 36 0 chr1 161398369 161398591 -81265762 + AluSx SINE Alu 1 230 -82 325 291 37 60 chr1 161399859 161399993 -81264360 - MIR SINE MIR -56 206 76 384 22 0 0 chr1 161400004 161400049 -81264304 + (TG)n Simple_repeat Simple_repeat 2 46 0 301 269 15 0 chr1 161400082 161400149 -81264204 - L1MC4 LINE L1 -1339 6703 6636 441 50 0 0 chr1 161400149 161400209 -81264144 + (GA)n Simple_repeat Simple_repeat 2 61 0 748 240 88 90 chr1 161400212 161400592 -81263761 - MER65A LTR ERV1 -1 444 64 2477 65 7 7 chr1 161400592 161400902 -81263451 - AluY SINE Alu -1 310 1 748 240 88 90 chr1 161400902 161400966 -81263387 - MER65A LTR ERV1 -381 64 1 2374 99 0 3 chr1 161401071 161401374 -81262979 + AluSx SINE Alu 1 302 -10 2264 113 0 0 chr1 161401388 161401688 -81262665 + AluSx SINE Alu 1 300 -12 1824 128 97 22 chr1 161402063 161402384 -81261969 - MSTB LTR MaLR -4 422 78 4531 125 120 12 chr1 161402502 161403317 -81261036 - MER4D LTR ERV1 0 903 1 220 196 89 0 chr1 161403791 161403847 -81260506 - L2 LINE L2 -7 3265 3205 2071 136 36 0 chr1 161404235 161404537 -81259816 - AluSp SINE Alu 0 313 1 233 350 64 14 chr1 161405922 161406142 -81258211 + L2 LINE L2 1962 2192 -1122 1020 204 122 44 chr1 161406142 161406626 -81257727 + MLT1F1 LTR MaLR 1 567 0 444 272 37 58 chr1 161407131 161407322 -81257031 + MIR SINE MIR 20 206 -56 2049 117 3 13 chr1 161407550 161407848 -81256505 - AluSx SINE Alu -17 295 1 635 319 35 4 chr1 161408039 161408265 -81256088 - MIR SINE MIR -25 237 5 562 229 21 21 chr1 161408508 161408652 -81255701 - MIR SINE MIR 0 262 119 234 331 66 8 chr1 161408789 161408910 -81255443 - MIR SINE MIR -48 214 87 29 0 0 0 chr1 161409475 161409504 -81254849 + AT_rich Low_complexity Low_complexity 1 29 0 899 139 0 0 chr1 161409504 161409626 -81254727 - AluJb SINE Alu -190 122 1 630 287 122 40 chr1 161409735 161410069 -81254284 - MLT1L LTR MaLR 0 615 135 1931 148 0 26 chr1 161410069 161410380 -81253973 - AluJo SINE Alu -9 303 1 630 287 122 40 chr1 161410380 161410450 -81253903 - MLT1L LTR MaLR -480 135 72 1028 134 0 47 chr1 161410678 161410850 -81253503 + FRAM SINE Alu 1 164 -12 27 0 0 0 chr1 161410889 161410916 -81253437 + AT_rich Low_complexity Low_complexity 1 27 0 1700 178 0 21 chr1 161411038 161411358 -81252995 - AluJo SINE Alu 0 315 2 321 269 161 16 chr1 161411455 161411641 -81252712 + L1ME4a LINE L1 5856 6068 -53 1975 225 20 16 chr1 161411662 161412107 -81252246 - L1ME1 LINE L1 -5 6161 5715 750 199 6 0 chr1 161412110 161412256 -81252097 - MLT1C LTR MaLR -3 464 235 1293 148 16 62 chr1 161413139 161413216 -81251137 - MLT1C LTR MaLR -234 233 154 2547 56 0 0 chr1 161413216 161413518 -81250835 + AluY SINE Alu 2 303 -8 1293 148 16 62 chr1 161413518 161413684 -81250669 - MLT1C LTR MaLR -313 154 1 1923 179 26 121 chr1 161413687 161414496 -81249857 - L1ME1 LINE L1 -455 5711 4963 233 220 0 0 chr1 161414555 161414605 -81249748 - L1M LINE L1 -968 5376 5327 618 305 77 65 chr1 161414612 161415091 -81249262 + L1MEd LINE L1 60 544 -5575 2114 126 3 10 chr1 161415131 161415441 -81248912 + AluSx SINE Alu 3 310 -2 365 247 48 100 chr1 161415692 161415923 -81248430 + L1MEd LINE L1 720 938 -5181 1039 170 0 0 chr1 161417856 161418027 -81246326 - AluSg/x SINE Alu -5 305 135 2061 154 3 0 chr1 161418032 161418338 -81246015 + AluSx SINE Alu 6 312 0 1080 178 112 0 chr1 161418477 161418674 -81245679 - MER20 DNA MER1_type 0 219 1 218 239 42 14 chr1 161418797 161418868 -81245485 + MIR SINE MIR 189 261 -1 232 254 16 16 chr1 161418890 161418953 -81245400 + GA-rich Low_complexity Low_complexity 1 63 0 2489 89 0 0 chr1 161419105 161419409 -81244944 + AluSx SINE Alu 1 304 -8 2542 70 0 0 chr1 161419541 161419841 -81244512 + AluY SINE Alu 1 300 -11 225 292 106 9 chr1 161420096 161420209 -81244144 - MIR SINE MIR -68 140 17 2135 115 0 7 chr1 161420459 161420774 -81243579 - AluSq SINE Alu 0 313 1 1612 187 27 3 chr1 161420913 161421207 -81243146 - AluJb SINE Alu -11 301 1 180 327 100 18 chr1 161421350 161421460 -81242893 + L3 LINE CR1 604 722 -855 1107 158 59 23 chr1 161422126 161422347 -81242006 + MER45B DNA AcHobo 1 229 -811 419 136 15 0 chr1 161422402 161422468 -81241885 - MER45B DNA AcHobo -725 315 249 1154 175 33 62 chr1 161422540 161422676 -81241677 + MER45B DNA AcHobo 327 455 -585 2145 130 0 3 chr1 161422676 161422975 -81241378 - AluSx SINE Alu -14 298 1 1154 175 33 62 chr1 161422975 161423078 -81241275 + MER45B DNA AcHobo 455 559 -481 341 43 21 0 chr1 161423098 161423145 -81241208 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 1302 166 59 38 chr1 161423145 161423161 -81241192 + MER45B DNA AcHobo 558 572 -468 2009 154 0 0 chr1 161423161 161423454 -81240899 - AluSx SINE Alu -19 293 1 1302 166 59 38 chr1 161423454 161423727 -81240626 + MER45B DNA AcHobo 572 853 -187 4857 127 15 4 chr1 161423765 161424495 -81239858 - L1MB3 LINE L1 -2 6181 5444 282 154 39 26 chr1 161424495 161424573 -81239780 + CT-rich Low_complexity Low_complexity 1 79 0 1691 140 44 60 chr1 161424573 161424888 -81239465 - AluSx SINE Alu -1 311 2 354 121 0 0 chr1 161424889 161424947 -81239406 - L1MB3 LINE L1 -731 5452 5395 331 202 11 22 chr1 161424947 161425036 -81239317 + MER45R DNA AcHobo 1433 1520 -61 372 167 30 0 chr1 161426471 161426537 -81237816 + MER45 DNA AcHobo 1513 1580 -1 1533 284 22 76 chr1 161426960 161427035 -81237318 - HERV16 LTR ERVL -4339 657 579 1989 179 0 0 chr1 161427035 161427347 -81237006 + AluJo SINE Alu 1 312 0 1533 284 22 76 chr1 161427347 161427966 -81236387 - HERV16 LTR ERVL -4417 579 1 1308 226 49 61 chr1 161427968 161428375 -81235978 - LTR16A1 LTR ERVL -2 455 54 416 302 127 38 chr1 161428385 161428490 -81235863 + LTR33 LTR ERVL 29 123 -398 2220 114 10 13 chr1 161428490 161428797 -81235556 + AluSx SINE Alu 1 306 -6 416 302 127 38 chr1 161428797 161429073 -81235280 + LTR33 LTR ERVL 123 488 -33 230 354 0 0 chr1 161429125 161429190 -81235163 - L2 LINE L2 -526 2788 2724 1981 165 0 0 chr1 161429331 161429634 -81234719 - AluJb SINE Alu -9 303 1 2441 69 0 28 chr1 161429693 161430010 -81234343 - AluY SINE Alu -3 308 1 439 325 39 21 chr1 161430012 161430246 -81234107 - HAL1b LINE L1 -808 540 303 43522 35 22 3 chr1 161430805 161435110 -81229243 - L1PA3 LINE L1 0 6155 1694 6740 52 34 63 chr1 161435110 161436665 -81227688 - SVA Other Other -839 1386 2 43522 35 22 3 chr1 161436665 161438393 -81225960 - L1PA3 LINE L1 -4461 1694 1 3608 264 105 5 chr1 161438637 161439761 -81224592 - L2 LINE L2 -337 2977 1742 1118 129 0 41 chr1 161439761 161439932 -81224421 + FRAM SINE Alu 1 163 -13 993 122 0 0 chr1 161439941 161440072 -81224281 + AluJo SINE Alu 2 132 -170 2521 65 10 0 chr1 161440103 161440409 -81223944 - AluY SINE Alu -1 310 2 1002 156 38 0 chr1 161440523 161440683 -81223670 + AluJo SINE Alu 137 302 -10 673 162 29 0 chr1 161440705 161440878 -81223475 + (TA)n Simple_repeat Simple_repeat 1 178 0 1792 179 10 3 chr1 161441428 161441725 -81222628 + AluJo SINE Alu 1 299 -13 180 196 22 0 chr1 161441801 161441847 -81222506 - L2 LINE L2 -938 2376 2330 353 211 0 14 chr1 161442709 161442780 -81221573 - L2 LINE L2 -3 3269 3200 43 35 0 0 chr1 161444377 161444434 -81219919 + AT_rich Low_complexity Low_complexity 1 57 0 315 49 0 0 chr1 161445357 161445398 -81218955 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 408 40 0 0 chr1 161445397 161445447 -81218906 + (TA)n Simple_repeat Simple_repeat 1 50 0 22 35 0 0 chr1 161446149 161446178 -81218175 + AT_rich Low_complexity Low_complexity 1 29 0 256 209 142 37 chr1 161446666 161446800 -81217553 + L1ME LINE L1 5721 5868 -253 3454 216 17 6 chr1 161446990 161447633 -81216720 + MER82 DNA MER2_type 4 653 0 762 204 43 52 chr1 161449248 161449478 -81214875 - L1ME1 LINE L1 -7 6159 5932 1563 124 5 0 chr1 161449989 161450198 -81214155 + AluSx SINE Alu 1 210 -102 804 141 16 0 chr1 161450198 161450326 -81214027 + AluSg/x SINE Alu 170 299 -13 23 86 0 0 chr1 161450336 161450394 -81213959 + AT_rich Low_complexity Low_complexity 1 58 0 1977 80 48 83 chr1 161450555 161450867 -81213486 + AluSp SINE Alu 6 306 -7 214 288 17 0 chr1 161451477 161451536 -81212817 - L2 LINE L2 -4 3268 3209 189 319 14 0 chr1 161452200 161452269 -81212084 - L2 LINE L2 0 3313 3244 1859 165 26 9 chr1 161453780 161454119 -81210234 + MER7A DNA MER2_type 1 343 -3 432 198 109 10 chr1 161454746 161454847 -81209506 - L2 LINE L2 -4 3309 3199 691 259 6 6 chr1 161454957 161455119 -81209234 + L2 LINE L2 3151 3312 -1 329 48 0 0 chr1 161455412 161455454 -81208899 - 5S rRNA rRNA -79 42 1 1554 207 21 3 chr1 161455522 161455812 -81208541 + AluJo SINE Alu 1 295 -17 200 351 53 30 chr1 161456295 161456426 -81207927 + L2 LINE L2 3179 3312 -1 1840 154 10 3 chr1 161456461 161456754 -81207599 + AluJb SINE Alu 1 295 -17 220 312 37 83 chr1 161456996 161457214 -81207139 - L2 LINE L2 -741 2573 2366 629 290 65 37 chr1 161457387 161457632 -81206721 + MIR SINE MIR 4 255 -7 1795 173 30 3 chr1 161457698 161457993 -81206360 + AluJo SINE Alu 1 303 -9 677 184 29 7 chr1 161458280 161458416 -81205937 + LTR24 LTR ERV1 286 424 -43 1175 236 168 0 chr1 161459270 161459580 -81204773 + REP3 LTR ERV 1 362 -200 623 167 23 53 chr1 161459590 161459722 -81204631 - FLAM_C SINE Alu -15 128 1 575 165 78 0 chr1 161459722 161459837 -81204516 + REP3 LTR ERV 381 504 -58 949 161 12 0 chr1 161459951 161460113 -81204240 + MLT1E1 LTR MaLR 491 654 0 1234 167 8 56 chr1 161460859 161461093 -81203260 - MER58A DNA MER1_type 0 224 2 443 194 60 0 chr1 161462395 161462529 -81201824 + L1ME1 LINE L1 3176 3317 -2829 * 560 186 35 0 chr1 161462527 161462640 -81201713 + L1MD3 LINE L1 7860 7976 -19 8835 123 12 52 chr1 161462647 161464897 -81199456 + L1P2 LINE L1 3509 5662 -492 6003 129 27 18 chr1 161464901 161465952 -81198401 - MER11C LTR ERVK -5 1066 7 4076 54 0 0 chr1 161465953 161466457 -81197896 + L1PA5 LINE L1 5651 6154 0 1495 201 70 30 chr1 161466459 161466887 -81197466 + L1ME1 LINE L1 4407 4851 -1295 2103 118 47 11 chr1 161466891 161467273 -81197080 - L1MB3 LINE L1 -3 6180 5785 577 210 0 42 chr1 161467287 161467406 -81196947 + AluSq/x SINE Alu 3 116 -196 2170 110 10 0 chr1 161467667 161467959 -81196394 - AluSx SINE Alu -17 295 1 2154 109 0 14 chr1 161468028 161468321 -81196032 - AluSg SINE Alu -21 289 1 2623 205 88 20 chr1 161468494 161468921 -81195432 + L1ME1 LINE L1 4846 5242 -924 1752 178 6 34 chr1 161468921 161469241 -81195112 + AluJo SINE Alu 1 311 -1 2623 205 88 20 chr1 161469241 161469971 -81194382 + L1ME1 LINE L1 5242 6073 -93 1895 164 92 9 chr1 161469988 161470336 -81194017 + MER44D DNA MER2_type 1 377 -328 323 197 14 14 chr1 161470333 161470404 -81193949 + MER44D DNA MER2_type 539 609 0 * 251 141 13 90 chr1 161470412 161470490 -81193863 + L1MA10 LINE L1 6263 6334 0 496 216 173 5 chr1 161470807 161470992 -81193361 - LTR50 LTR ERVL -577 218 3 1855 113 73 56 chr1 161471210 161471565 -81192788 - MER46B DNA MER2_type 0 236 1 302 189 0 0 chr1 161471577 161471630 -81192723 + MLT1D LTR MaLR 6 58 -447 1205 130 0 0 chr1 161471630 161471799 -81192554 - AluSg/x SINE Alu -11 299 131 569 191 45 0 chr1 161471803 161471913 -81192440 + MLT1D LTR MaLR 46 160 -345 194 57 57 0 chr1 161471926 161471961 -81192392 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1262 195 42 0 chr1 161471970 161472211 -81192142 + MLT1D LTR MaLR 255 505 0 319 289 50 90 chr1 161472213 161472514 -81191839 + HAL1b LINE L1 586 874 -474 1144 61 0 0 chr1 161472894 161473026 -81191327 + AluY SINE Alu 1 132 -179 450 287 248 31 chr1 161473060 161473177 -81191176 - L2 LINE L2 -4 3309 3219 1851 26 0 18 chr1 161473177 161473405 -81190948 + L1PA4 LINE L1 5932 6155 0 450 287 248 31 chr1 161473405 161473573 -81190780 - L2 LINE L2 -94 3219 2962 566 302 81 37 chr1 161473594 161474024 -81190329 + L1MB8 LINE L1 2111 2559 -3587 240 286 189 14 chr1 161474122 161474210 -81190143 + L1MB8 LINE L1 2750 2821 -3325 1753 158 0 62 chr1 161474210 161474533 -81189820 + AluJo SINE Alu 1 303 -9 240 286 189 14 chr1 161474533 161474661 -81189692 + L1MB8 LINE L1 2821 3004 -3142 368 244 98 11 chr1 161474771 161475052 -81189301 + L1MB8 LINE L1 5122 5423 -728 1635 133 35 42 chr1 161475147 161475463 -81188890 + AluJb SINE Alu 1 314 0 3433 174 50 22 chr1 161475608 161475985 -81188368 + L1MB8 LINE L1 5433 5798 -380 2282 76 0 0 chr1 161475985 161476260 -81188093 + AluSx SINE Alu 29 303 -9 3433 174 50 22 chr1 161476260 161476608 -81187745 + L1MB8 LINE L1 5798 6178 0 21 57 0 0 chr1 161476634 161476669 -81187684 + AT_rich Low_complexity Low_complexity 1 35 0 23 86 0 0 chr1 161476839 161476897 -81187456 + AT_rich Low_complexity Low_complexity 1 58 0 24 0 0 0 chr1 161477277 161477301 -81187052 + AT_rich Low_complexity Low_complexity 1 24 0 2243 125 0 0 chr1 161477861 161478158 -81186195 - AluSx SINE Alu -15 297 1 261 301 48 0 chr1 161478470 161478553 -81185800 - L2 LINE L2 -1335 1979 1893 414 0 0 0 chr1 161478620 161478666 -81185687 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1825 184 0 3 chr1 161478666 161478965 -81185388 + AluJb SINE Alu 1 298 -14 412 242 202 0 chr1 161479137 161479236 -81185117 + L2 LINE L2 3153 3271 -1 478 219 223 33 chr1 161479494 161479768 -81184585 + MER46C DNA MER2_type 13 338 0 1431 199 40 11 chr1 161479960 161480237 -81184116 - AluJo SINE Alu -25 287 3 343 321 66 15 chr1 161480474 161480611 -81183742 + L2 LINE L2 2767 2910 -404 3677 163 79 23 chr1 161480973 161481708 -81182645 + MER21B LTR ERV1 1 776 -87 357 205 48 0 chr1 161481769 161481852 -81182501 + MER103 DNA DNA 31 117 -49 279 323 21 11 chr1 161481979 161482072 -81182281 - MIR SINE MIR -16 246 153 262 305 91 13 chr1 161484483 161484637 -81179716 - MIR3 SINE MIR -11 197 32 304 234 56 65 chr1 161485161 161485268 -81179085 - MER5B DNA MER1_type 0 178 73 950 200 0 0 chr1 161485497 161485657 -81178696 - FRAM SINE Alu -6 160 1 311 374 26 0 chr1 161486142 161486257 -81178096 - HAL1 LINE L1 -1964 543 426 596 261 63 13 chr1 161486260 161486498 -81177855 - HAL1 LINE L1 -2118 389 140 1785 144 15 0 chr1 161486820 161487090 -81177263 + AluSx SINE Alu 25 298 -14 691 281 80 38 chr1 161487443 161487841 -81176512 + L1MC4a LINE L1 5507 5921 -1887 315 0 0 0 chr1 161487846 161487881 -81176472 + (CA)n Simple_repeat Simple_repeat 1 35 0 1562 203 101 3 chr1 161487910 161488265 -81176088 + MLT1B LTR MaLR 1 390 0 744 255 15 12 chr1 161489164 161489423 -81174930 - L1MC4 LINE L1 -89 7953 7694 30 0 0 0 chr1 161489508 161489538 -81174815 + AT_rich Low_complexity Low_complexity 1 30 0 2022 105 22 7 chr1 161490050 161490327 -81174026 + AluSx SINE Alu 1 281 -31 231 352 66 11 chr1 161490586 161490677 -81173676 - L2 LINE L2 -36 3277 3182 5908 131 94 25 chr1 161490694 161491249 -81173104 + Tigger3b DNA MER2_type 1 516 -2512 2078 148 3 0 chr1 161491249 161491554 -81172799 + AluJb SINE Alu 3 308 -4 5908 131 94 25 chr1 161491554 161492150 -81172203 + Tigger3b DNA MER2_type 516 1231 0 281 148 0 123 chr1 161492472 161492553 -81171800 - L1MA9 LINE L1 -410 5890 5820 1648 146 35 60 chr1 161492553 161492868 -81171485 - AluSq SINE Alu -6 307 1 1008 114 0 0 chr1 161492870 161493002 -81171351 - AluSq/x SINE Alu -180 132 1 2407 94 0 3 chr1 161493032 161493340 -81171013 - AluSc SINE Alu -2 307 1 2229 125 0 3 chr1 161494444 161494748 -81169605 - AluSx SINE Alu -9 303 1 990 189 6 0 chr1 161494990 161495154 -81169199 - AluJb SINE Alu -14 298 134 210 162 0 0 chr1 161495350 161495387 -81168966 + T-rich Low_complexity Low_complexity 1 37 0 339 235 113 20 chr1 161496373 161496581 -81167772 - MLT1H LTR MaLR -69 480 233 353 232 152 67 chr1 161496856 161497080 -81167273 + MIR SINE MIR 16 258 -4 2181 111 129 0 chr1 161498897 161499230 -81165123 - MER83B LTR ERV1 -2 376 1 17972 93 30 15 chr1 161499230 161501215 -81163138 - MER83B-int LTR ERV1 -11 4869 2916 2392 82 7 0 chr1 161501215 161501518 -81162835 - AluY SINE Alu -6 305 1 17972 93 30 15 chr1 161501518 161501670 -81162683 - MER83B-int LTR ERV1 -1964 2916 2768 2223 124 0 0 chr1 161501670 161501969 -81162384 - AluSg SINE Alu -11 299 1 17972 93 30 15 chr1 161501969 161502621 -81161732 - MER83B-int LTR ERV1 -2112 2768 2127 2340 38 42 7 chr1 161502621 161502909 -81161444 - AluY SINE Alu -12 299 2 17972 93 30 15 chr1 161502909 161503964 -81160389 - MER83B-int LTR ERV1 -2753 2127 973 5159 156 83 13 chr1 161505113 161506025 -81158328 - MER83B-int LTR ERV1 -3893 987 12 1534 111 74 21 chr1 161506027 161506342 -81158011 - MER83B LTR ERV1 -2 376 1 586 165 9 0 chr1 161506370 161506479 -81157874 + L1MA6 LINE L1 5746 5855 -448 1192 102 0 61 chr1 161506626 161506847 -81157506 - L1MA6 LINE L1 -469 5833 5627 2811 94 34 43 chr1 161506847 161507174 -81157179 + L1MA6 LINE L1 5835 6163 -137 2091 121 19 0 chr1 161507174 161507481 -81156872 + AluSq SINE Alu 1 313 0 2811 94 34 43 chr1 161507481 161507615 -81156738 + L1MA6 LINE L1 6163 6297 -3 32 26 0 0 chr1 161507632 161507671 -81156682 + AT_rich Low_complexity Low_complexity 1 39 0 1663 129 0 4 chr1 161507686 161507927 -81156426 - L1PB3 LINE L1 -6 6148 5909 2353 101 3 0 chr1 161508721 161509028 -81155325 + AluSx SINE Alu 1 308 -4 321 26 0 0 chr1 161510165 161510203 -81154150 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1824 166 169 3 chr1 161510431 161510798 -81153555 - MSTA LTR MaLR 0 428 1 775 189 8 0 chr1 161510983 161511115 -81153238 - FRAM SINE Alu -30 146 14 2125 148 0 0 chr1 161512256 161512554 -81151799 - AluSx SINE Alu -14 298 1 1956 152 102 28 chr1 161512559 161512922 -81151431 + LTR57 LTR ERVL 22 411 0 1734 205 43 53 chr1 161512948 161513440 -81150913 - Charlie4a DNA MER1_type -20 488 2 269 263 121 0 chr1 161513724 161513823 -81150530 - MIR SINE MIR -18 244 134 1454 182 0 82 chr1 161513914 161514278 -81150075 + AluJb SINE Alu 1 312 0 638 325 88 10 chr1 161514279 161514587 -81149766 - L2 LINE L2 -84 3229 2898 1881 140 0 11 chr1 161514640 161514950 -81149403 + AluSx SINE Alu 1 307 0 4761 156 50 5 chr1 161514950 161516121 -81148232 - L1MB2 LINE L1 -36 6135 4912 283 303 264 0 chr1 161516128 161516306 -81148047 - L2 LINE L2 -400 2914 2690 2420 191 60 31 chr1 161516308 161516821 -81147532 + L1MB7 LINE L1 5586 6119 -65 1628 168 0 77 chr1 161516821 161517148 -81147205 - AluJo SINE Alu -10 302 1 2420 191 60 31 chr1 161517148 161517216 -81147137 + L1MB7 LINE L1 6119 6184 0 28 0 0 0 chr1 161517401 161517429 -81146924 + AT_rich Low_complexity Low_complexity 1 28 0 1793 172 0 22 chr1 161518609 161518923 -81145430 + AluJo SINE Alu 3 309 -3 1785 198 72 45 chr1 161519784 161520090 -81144263 - MLT1D LTR MaLR -1 504 179 1573 88 55 5 chr1 161520090 161520307 -81144046 + AluSg/x SINE Alu 83 310 0 1785 198 72 45 chr1 161520307 161520485 -81143868 - MLT1D LTR MaLR -326 179 7 297 261 22 22 chr1 161521436 161521528 -81142825 + L2 LINE L2 3181 3272 0 2253 108 0 6 chr1 161521561 161521875 -81142478 - AluSx SINE Alu 0 312 1 949 163 43 22 chr1 161522181 161522365 -81141988 + MER5A DNA MER1_type 1 188 -1 1502 165 55 11 chr1 161522583 161522855 -81141498 + AluJb SINE Alu 7 290 -22 2250 87 10 0 chr1 161524260 161524549 -81139804 + AluJo SINE Alu 1 292 -20 373 265 65 70 chr1 161524888 161525118 -81139235 - MIR SINE MIR -10 252 24 329 43 21 0 chr1 161526517 161526564 -81137789 + (CTGGGG)n Simple_repeat Simple_repeat 5 52 0 217 238 60 24 chr1 161526833 161526917 -81137436 + MIR SINE MIR 30 116 -92 428 284 219 5 chr1 161526932 161527147 -81137206 + MIR SINE MIR 2 262 0 746 259 18 22 chr1 161527342 161527566 -81136787 + MIR SINE MIR 6 228 -34 1241 136 0 75 chr1 161528630 161528858 -81135495 - AluJb SINE Alu -15 297 87 941 188 24 29 chr1 161530319 161530526 -81133827 + MER3 DNA MER1_type 4 209 0 191 317 197 24 chr1 161531413 161531621 -81132732 + MIR SINE MIR 4 247 -15 381 266 25 68 chr1 161531781 161531878 -81132475 + MER63 DNA MER1_type 12 112 -1576 1926 164 120 8 chr1 161531878 161532261 -81132092 - MSTB LTR MaLR 0 426 1 381 266 25 68 chr1 161532261 161532360 -81131993 + MER63 DNA MER1_type 112 1688 0 1647 166 50 0 chr1 161533458 161533735 -81130618 - AluJb SINE Alu -21 291 1 375 296 24 16 chr1 161534332 161534457 -81129896 - L2 LINE L2 -1 3271 3146 915 186 10 36 chr1 161534641 161534835 -81129518 + MER20 DNA MER1_type 31 219 0 236 258 16 0 chr1 161535279 161535341 -81129012 + MIR SINE MIR 191 253 -9 348 206 74 132 chr1 161535872 161536061 -81128292 - MER5B DNA MER1_type 0 178 1 2067 213 58 42 chr1 161536565 161536797 -81127556 - L1ME3A LINE L1 -35 6135 5908 1992 143 0 20 chr1 161536797 161537097 -81127256 - AluJo SINE Alu -18 294 1 2067 213 58 42 chr1 161537097 161537455 -81126898 - L1ME3A LINE L1 -262 5908 5536 201 314 169 8 chr1 161537531 161537649 -81126704 - MIR SINE MIR -119 143 7 1732 116 48 82 chr1 161537844 161538138 -81126215 - AluSx SINE Alu -28 284 1 183 161 0 0 chr1 161539429 161539460 -81124893 - L2 LINE L2 -17 3255 3225 277 188 12 59 chr1 161539494 161539579 -81124774 - MIR SINE MIR 0 262 182 406 174 186 23 chr1 161539834 161539920 -81124433 - Tigger5 DNA MER2_type 0 2323 2224 963 175 71 11 chr1 161540159 161540342 -81124011 - AluJb SINE Alu -7 305 112 442 133 0 0 chr1 161540342 161540402 -81123951 - AluS SINE Alu -257 61 2 407 246 97 111 chr1 161541040 161541247 -81123106 - MER102b DNA MER1_type -3 338 135 336 48 0 0 chr1 161541248 161541290 -81123063 + (TG)n Simple_repeat Simple_repeat 2 43 0 2010 155 0 0 chr1 161541798 161542095 -81122258 - AluJb SINE Alu -14 298 2 755 158 38 66 chr1 161542103 161542137 -81122216 - MER5B DNA MER1_type 0 178 145 1845 186 48 79 chr1 161542137 161542658 -81121695 + MLT1D LTR MaLR 1 505 0 755 158 38 66 chr1 161542658 161542806 -81121547 - MER5B DNA MER1_type -33 145 1 1589 224 55 20 chr1 161544085 161544536 -81119817 + MLT1C LTR MaLR 1 467 0 588 217 179 69 chr1 161544756 161545046 -81119307 + MER102b DNA MER1_type 19 340 -1 266 317 19 10 chr1 161545172 161545276 -81119077 + MER5B DNA MER1_type 3 107 -71 239 277 31 0 chr1 161545302 161545367 -81118986 - MER5A DNA MER1_type -86 103 37 423 267 30 23 chr1 161546642 161546773 -81117580 - L2 LINE L2 0 3313 3182 551 210 0 16 chr1 161548143 161548267 -81116086 - L1MA10 LINE L1 -3 6331 6210 893 163 20 7 chr1 161548268 161548421 -81115932 + FRAM SINE Alu 1 151 -25 206 77 0 51 chr1 161548421 161548460 -81115893 + (TA)n Simple_repeat Simple_repeat 1 37 0 506 224 5 109 chr1 161548460 161548652 -81115701 - L1ME2 LINE L1 -119 6045 5874 575 132 23 23 chr1 161548661 161548790 -81115563 + CT-rich Low_complexity Low_complexity 1 129 0 1096 267 3 10 chr1 161548805 161549013 -81115340 - L1MEc LINE L1 -6071 325 118 2332 113 3 0 chr1 161549013 161549324 -81115029 + AluSx SINE Alu 1 312 0 1096 267 3 10 chr1 161549324 161549407 -81114946 - L1MEc LINE L1 -6278 118 36 189 333 49 0 chr1 161549610 161549691 -81114662 + MIR SINE MIR 40 124 -84 209 288 0 38 chr1 161549844 161549924 -81114429 + L2 LINE L2 3237 3313 0 23 33 0 0 chr1 161550982 161551012 -81113341 + AT_rich Low_complexity Low_complexity 1 30 0 434 270 108 32 chr1 161551317 161551502 -81112851 + MIR SINE MIR 20 218 -44 270 286 87 36 chr1 161552068 161552233 -81112120 + MIR SINE MIR 17 192 -63 994 198 0 11 chr1 161552317 161552494 -81111859 + FAM SINE Alu 1 175 0 1863 156 0 36 chr1 161552775 161553083 -81111270 - AluJo SINE Alu -15 297 1 591 251 58 23 chr1 161553176 161553347 -81111006 - MIR SINE MIR 0 262 86 270 0 0 0 chr1 161553549 161553579 -81110774 + (CA)n Simple_repeat Simple_repeat 2 31 0 465 313 42 21 chr1 161554143 161554335 -81110018 + L3 LINE CR1 1381 1576 -1 555 295 32 76 chr1 161554513 161554920 -81109433 + MLT1J LTR MaLR 123 511 0 519 332 20 15 chr1 161554950 161555152 -81109201 + MIR SINE MIR 47 249 -13 23 86 0 0 chr1 161555293 161555351 -81109002 + AT_rich Low_complexity Low_complexity 1 58 0 23 33 0 0 chr1 161555386 161555416 -81108937 + AT_rich Low_complexity Low_complexity 1 30 0 253 304 141 22 chr1 161555465 161555600 -81108753 + MER5A DNA MER1_type 36 186 -3 195 260 0 130 chr1 161556074 161556151 -81108202 - L2 LINE L2 -2 3270 3204 2201 122 14 0 chr1 161556175 161556471 -81107882 + AluSx SINE Alu 1 300 -12 508 88 0 88 chr1 161556500 161556591 -81107762 + HY3 scRNA scRNA 13 95 -6 180 0 0 0 chr1 161556596 161556616 -81107737 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 475 323 158 16 chr1 161556751 161557337 -81107016 - L2 LINE L2 -204 3068 2383 395 220 22 22 chr1 161557353 161557444 -81106909 + MIR SINE MIR 56 146 -62 37 43 0 14 chr1 161557828 161557849 -81106504 + AT_rich Low_complexity Low_complexity 1 21 -47 709 65 0 0 chr1 161557849 161557942 -81106411 + L1PA8 LINE L1 6067 6159 -13 37 43 0 14 chr1 161557942 161557989 -81106364 + AT_rich Low_complexity Low_complexity 21 68 0 256 394 86 17 chr1 161558029 161558379 -81105974 + L2 LINE L2 2895 3268 -4 251 216 31 10 chr1 161558489 161558586 -81105767 + CT-rich Low_complexity Low_complexity 3 101 0 21 0 0 0 chr1 161558689 161558710 -81105643 + AT_rich Low_complexity Low_complexity 1 21 0 348 331 32 24 chr1 161558758 161558882 -81105471 + L2 LINE L2 3139 3263 -9 338 320 114 48 chr1 161558975 161559120 -81105233 + MIR SINE MIR 1 168 -94 297 0 0 0 chr1 161559120 161559153 -81105200 + (CA)n Simple_repeat Simple_repeat 2 34 0 338 320 114 48 chr1 161559153 161559235 -81105118 + MIR SINE MIR 168 243 -19 1225 271 82 12 chr1 161560149 161560636 -81103717 - LTR33 LTR ERVL 0 521 1 238 257 174 21 chr1 161560646 161560790 -81103563 + MIR SINE MIR 92 257 -5 332 43 0 21 chr1 161561041 161561088 -81103265 + (TG)n Simple_repeat Simple_repeat 2 47 0 195 42 0 0 chr1 161561150 161561174 -81103179 + (TCCA)n Simple_repeat Simple_repeat 3 26 0 226 309 99 0 chr1 161561401 161561482 -81102871 + L2 LINE L2 3180 3268 -4 187 54 54 0 chr1 161561896 161561933 -81102420 + A-rich Low_complexity Low_complexity 2 40 0 4047 161 26 14 chr1 161562485 161563284 -81101069 - L1MB5 LINE L1 0 6174 5366 941 269 93 16 chr1 161565078 161565442 -81098911 + MLT1J1 LTR MaLR 21 412 -34 800 212 1 6 chr1 161565656 161565840 -81098513 + L1PA16 LINE L1 5979 6156 -5 304 154 200 0 chr1 161565850 161565915 -81098438 - MLT1H1 LTR MaLR -44 511 434 593 206 30 124 chr1 161566110 161566343 -81098010 - L2 LINE L2 -2 3311 3101 887 147 37 18 chr1 161566396 161566559 -81097794 - FRAM SINE Alu 0 176 11 1798 283 77 17 chr1 161567004 161567658 -81096695 - L2 LINE L2 -227 3086 2395 4302 269 61 25 chr1 161567682 161568142 -81096211 - L2 LINE L2 -1626 1688 1246 1923 100 91 26 chr1 161568142 161568492 -81095861 - THE1C LTR MaLR -2 373 1 10206 114 41 8 chr1 161568492 161570022 -81094331 - THE1C-int LTR MaLR 0 1580 1 1872 128 75 33 chr1 161570022 161570382 -81093971 - THE1C LTR MaLR 0 375 1 4302 269 61 25 chr1 161570382 161571079 -81093274 - L2 LINE L2 -2068 1246 465 2262 51 0 27 chr1 161571079 161571405 -81092948 + AluY SINE Alu 1 318 0 4302 269 61 25 chr1 161571405 161571652 -81092701 - L2 LINE L2 -2849 465 228 249 236 236 52 chr1 161573617 161573791 -81090562 - MIR SINE MIR -33 229 24 269 330 0 28 chr1 161573977 161574083 -81090270 + MIR SINE MIR 62 164 -98 544 0 28 14 chr1 161574441 161574513 -81089840 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 2160 110 10 26 chr1 161574516 161574826 -81089527 - AluSx SINE Alu -7 305 1 1742 183 10 7 chr1 161574870 161575171 -81089182 - AluJb SINE Alu -10 302 1 900 216 135 27 chr1 161575438 161575697 -81088656 - L1ME1 LINE L1 -3 6163 5877 1995 141 10 0 chr1 161575911 161576210 -81088143 - AluSx SINE Alu -10 302 1 26 30 0 0 chr1 161576389 161576422 -81087931 + AT_rich Low_complexity Low_complexity 1 33 0 228 202 115 29 chr1 161576564 161576668 -81087685 - L1ME LINE L1 -205 5916 5804 523 282 93 62 chr1 161577429 161577569 -81086784 - MARNA DNA Mariner -8 578 444 2234 127 0 13 chr1 161577569 161577884 -81086469 + AluSx SINE Alu 1 311 -1 523 282 93 62 chr1 161577884 161578261 -81086092 - MARNA DNA Mariner -142 444 45 2065 152 33 30 chr1 161578468 161578831 -81085522 - THE1B LTR MaLR 0 364 1 216 302 58 12 chr1 161579200 161579286 -81085067 + L2 LINE L2 3178 3267 -46 973 215 15 5 chr1 161579384 161579584 -81084769 - MLT1A2 LTR MaLR 0 374 173 529 224 88 47 chr1 161579631 161579722 -81084631 - MLT1A2 LTR MaLR -193 181 95 1808 142 82 17 chr1 161579722 161580074 -81084279 + THE1C LTR MaLR 1 375 0 529 224 88 47 chr1 161580074 161580152 -81084201 - MLT1A2 LTR MaLR -279 95 5 186 243 216 27 chr1 161580210 161580284 -81084069 - L2 LINE L2 -23 3249 3162 569 170 0 0 chr1 161580285 161580385 -81083968 - MLT1D LTR MaLR 0 626 527 2148 124 0 29 chr1 161580391 161580698 -81083655 + AluSx SINE Alu 1 298 -14 1097 194 119 31 chr1 161580698 161581017 -81083336 - MLT1D LTR MaLR -145 360 14 195 129 0 0 chr1 161581091 161581122 -81083231 + (TA)n Simple_repeat Simple_repeat 2 32 0 1663 172 108 10 chr1 161581947 161582353 -81082000 - L1ME2 LINE L1 -6 6158 5713 324 350 82 21 chr1 161582412 161582703 -81081650 - L2 LINE L2 -946 2368 2060 246 238 16 0 chr1 161583117 161583180 -81081173 + (TGG)n Simple_repeat Simple_repeat 2 65 0 420 291 104 90 chr1 161583305 161584011 -81080342 - L1M2 LINE L1 -5465 1384 667 867 266 19 41 chr1 161586877 161587144 -81077209 - MIR SINE MIR 0 262 2 1780 179 3 16 chr1 161587239 161587547 -81076806 + AluJo SINE Alu 1 304 -8 315 321 11 11 chr1 161588890 161588996 -81075357 - MIR SINE MIR -46 162 56 324 0 0 0 chr1 161589868 161589904 -81074449 + (TG)n Simple_repeat Simple_repeat 1 36 0 344 330 137 13 chr1 161591183 161591410 -81072943 + MIR SINE MIR 6 260 -2 218 361 105 27 chr1 161593065 161593284 -81071069 + L2 LINE L2 3019 3254 -18 2125 113 0 14 chr1 161593393 161593685 -81070668 - AluSx SINE Alu -24 288 1 557 236 28 0 chr1 161593771 161593915 -81070438 - MER112 DNA MER1_type -112 148 1 228 264 42 14 chr1 161594373 161594445 -81069908 - L2 LINE L2 -2 3311 3238 709 299 74 22 chr1 161594542 161594853 -81069500 + L3 LINE CR1 1219 1545 -32 243 0 0 0 chr1 161594855 161594882 -81069471 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1824 172 0 10 chr1 161595135 161595438 -81068915 - AluJb SINE Alu -12 300 1 23 54 0 0 chr1 161595440 161595477 -81068876 + AT_rich Low_complexity Low_complexity 1 37 0 1058 207 27 10 chr1 161596127 161596359 -81067994 + MIR SINE MIR 1 236 -26 531 81 0 14 chr1 161596463 161596537 -81067816 - Alu SINE Alu -14 296 224 1434 114 48 0 chr1 161596628 161596838 -81067515 - AluSq SINE Alu -93 220 1 5899 140 32 13 chr1 161596848 161598843 -81065510 - L1PA14 LINE L1 -3 6158 4145 184 188 58 72 chr1 161599413 161599482 -81064871 + L3 LINE CR1 993 1060 -517 1510 189 18 67 chr1 161599712 161600098 -81064255 + MLT1A2 LTR MaLR 4 370 -4 344 347 20 14 chr1 161600535 161600682 -81063671 - MER5B DNA MER1_type -29 149 2 250 211 0 0 chr1 161600741 161600798 -81063555 + L2 LINE L2 1853 1909 -1405 430 367 58 18 chr1 161600808 161601083 -81063270 + L2 LINE L2 2521 2806 -508 243 295 155 31 chr1 161601311 161601440 -81062913 + L2 LINE L2 3078 3222 -50 194 339 0 0 chr1 161601478 161601537 -81062816 + L2 LINE L2 1917 1975 -1339 962 270 113 37 chr1 161601539 161602102 -81062251 - L2 LINE L2 -20 3293 2686 289 196 178 47 chr1 161602106 161602213 -81062140 + Charlie5 DNA MER1_type 3 123 -2489 1499 169 52 18 chr1 161602228 161602571 -81061782 + Charlie5 DNA MER1_type 2263 2617 0 1146 291 110 2 chr1 161602575 161603021 -81061332 - L2 LINE L2 -619 2695 2202 4331 185 37 16 chr1 161603023 161604718 -81059635 + L1MB7 LINE L1 4442 6165 -19 444 326 102 48 chr1 161604872 161605458 -81058895 - L2 LINE L2 -1425 1889 1272 308 343 146 16 chr1 161605495 161605835 -81058518 + L2 LINE L2 2679 3066 -206 188 191 48 0 chr1 161605976 161606018 -81058335 + MIR SINE MIR 109 152 -110 29 0 0 0 chr1 161607036 161607065 -81057288 + AT_rich Low_complexity Low_complexity 1 29 0 2098 139 3 3 chr1 161607205 161607515 -81056838 + AluJb SINE Alu 1 310 -2 275 370 50 8 chr1 161608446 161608565 -81055788 - L2 LINE L2 -8 3264 3141 1216 232 57 19 chr1 161609803 161610169 -81054184 - HsTC2 DNA Tc2 0 1898 1519 2404 74 3 0 chr1 161610757 161611054 -81053299 - AluSx SINE Alu -14 298 1 258 121 0 69 chr1 161612376 161612475 -81051878 + Alu SINE Alu 248 342 0 1224 264 78 3 chr1 161613202 161613535 -81050818 - MER20B DNA MER1_type -311 472 115 216 269 231 45 chr1 161615122 161615278 -81049075 + MIR SINE MIR 74 258 -4 606 272 80 65 chr1 161615318 161615594 -81048759 - L2 LINE L2 -8 3305 3026 210 254 0 0 chr1 161616192 161616259 -81048094 + (TA)n Simple_repeat Simple_repeat 2 68 0 4519 104 9 14 chr1 161616637 161617302 -81047051 - L1PA16 LINE L1 -11 6155 5494 940 256 22 4 chr1 161617513 161617740 -81046613 + MIR SINE MIR 3 233 -29 2348 81 0 0 chr1 161617785 161618080 -81046273 - AluSc SINE Alu -14 295 1 531 242 57 44 chr1 161618088 161618315 -81046038 + L1MC5 LINE L1 7706 7935 -26 27 49 0 0 chr1 161620041 161620082 -81044271 + AT_rich Low_complexity Low_complexity 1 41 0 258 316 32 11 chr1 161621940 161622035 -81042318 - LTR67 LTR ERVL -362 195 99 21 0 0 0 chr1 161622226 161622247 -81042106 + AT_rich Low_complexity Low_complexity 1 21 0 1154 238 175 17 chr1 161623973 161624036 -81040317 - L1MC4 LINE L1 -2 8040 7988 2503 51 14 0 chr1 161624036 161624330 -81040023 + AluSp SINE Alu 1 298 -15 1154 238 175 17 chr1 161624330 161624402 -81039951 - L1MC4 LINE L1 -54 7988 7929 321 26 0 0 chr1 161624402 161624440 -81039913 + (CA)n Simple_repeat Simple_repeat 2 39 0 1154 238 175 17 chr1 161624440 161624766 -81039587 - L1MC4 LINE L1 -113 7929 7505 551 230 143 4 chr1 161624971 161625201 -81039152 - L1ME4a LINE L1 -157 5964 5703 591 252 0 0 chr1 161625208 161625331 -81039022 + FLAM_A SINE Alu 8 130 -12 459 0 0 0 chr1 161625335 161625386 -81038967 + (CA)n Simple_repeat Simple_repeat 1 51 0 2403 101 0 0 chr1 161625433 161625741 -81038612 - AluSg SINE Alu -2 308 1 591 232 106 42 chr1 161626480 161626924 -81037429 - MLT1H LTR MaLR -15 534 1 1093 320 42 50 chr1 161627497 161627975 -81036378 + MER115 DNA AcHobo 2 475 -218 481 242 105 33 chr1 161629153 161629306 -81035047 - MIR3 SINE MIR -5 203 40 22 0 0 0 chr1 161629583 161629605 -81034748 + AT_rich Low_complexity Low_complexity 1 22 0 190 355 62 33 chr1 161629875 161630086 -81034267 - L3b LINE CR1 -75 1508 1292 197 333 0 0 chr1 161630221 161630272 -81034081 - MIR SINE MIR -112 96 46 218 248 200 64 chr1 161630477 161630602 -81033751 + MIR SINE MIR 70 211 -51 1723 176 3 13 chr1 161630948 161631250 -81033103 - AluJb SINE Alu -13 299 1 200 111 0 28 chr1 161631297 161631333 -81033020 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 193 258 135 34 chr1 161631732 161631821 -81032532 + L3 LINE CR1 1403 1500 -77 201 158 0 0 chr1 161632768 161632806 -81031547 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 526 153 0 12 chr1 161632855 161632940 -81031413 - AluJ/FLAM SINE Alu -228 84 1 7267 149 93 66 chr1 161633250 161633836 -81030517 - L1MC3 LINE L1 0 7785 7216 298 258 0 0 chr1 161633836 161633902 -81030451 - MLT1F1 LTR MaLR -450 117 52 7267 149 93 66 chr1 161633902 161634133 -81030220 - L1MC3 LINE L1 -569 7216 6993 222 91 0 0 chr1 161634133 161634166 -81030187 + (TG)n Simple_repeat Simple_repeat 2 34 0 7267 149 93 66 chr1 161634166 161634667 -81029686 - L1MC3 LINE L1 -792 6993 6346 1605 185 46 9 chr1 161634667 161634992 -81029361 - MER1B DNA MER1_type 0 337 1 7267 149 93 66 chr1 161634992 161635284 -81029069 - L1MC3 LINE L1 -1439 6346 6063 217 116 47 0 chr1 161635302 161635345 -81029008 + T-rich Low_complexity Low_complexity 3 47 0 1888 159 17 20 chr1 161635425 161635726 -81028627 - AluJo SINE Alu -12 300 1 1481 109 0 0 chr1 161635900 161636093 -81028260 - AluSc SINE Alu -116 193 1 1021 111 0 0 chr1 161636094 161636229 -81028124 - AluSq/x SINE Alu -177 135 1 1208 134 0 5 chr1 161636368 161636555 -81027798 - AluY SINE Alu -4 307 122 10373 36 0 8 chr1 161636565 161638654 -81025699 - L1PA8 LINE L1 -8 6164 4119 379 207 74 8 chr1 161640475 161640596 -81023757 - L1ME4a LINE L1 0 6121 5993 192 222 44 0 chr1 161641510 161641555 -81022798 - L2 LINE L2 -212 3060 3014 623 322 93 55 chr1 161641626 161642045 -81022308 - L2 LINE L2 0 3272 2838 190 317 280 20 chr1 161642160 161642699 -81021654 - L2 LINE L2 -925 2389 1711 2476 45 3 16 chr1 161642799 161643111 -81021242 + AluY SINE Alu 1 308 -3 21 0 0 0 chr1 161643992 161644013 -81020340 + AT_rich Low_complexity Low_complexity 1 21 0 1644 167 0 7 chr1 161644857 161645132 -81019221 + AluJo SINE Alu 16 288 -24 28 0 0 0 chr1 161645132 161645160 -81019193 + AT_rich Low_complexity Low_complexity 1 28 0 265 205 96 24 chr1 161645502 161645585 -81018768 - MIR SINE MIR -98 164 76 1877 134 17 17 chr1 161645997 161646296 -81018057 + AluJb SINE Alu 1 299 -13 186 336 78 35 chr1 161647181 161647297 -81017056 + L2 LINE L2 2915 3035 -237 1901 169 0 0 chr1 161648099 161648395 -81015958 - AluJb SINE Alu -12 300 5 385 313 55 25 chr1 161648765 161648928 -81015425 - MIR SINE MIR -48 214 47 1117 286 60 25 chr1 161648991 161649181 -81015172 + L2 LINE L2 2517 2699 -614 2350 86 3 0 chr1 161649181 161649482 -81014871 + AluSp SINE Alu 1 302 -11 1117 286 60 25 chr1 161649482 161649749 -81014604 + L2 LINE L2 2699 3074 -239 537 276 60 26 chr1 161649946 161650178 -81014175 + MER112 DNA MER1_type 20 259 -1 24 53 0 0 chr1 161650606 161650644 -81013709 + AT_rich Low_complexity Low_complexity 1 38 0 349 188 10 10 chr1 161650870 161650966 -81013387 + CT-rich Low_complexity Low_complexity 4 99 0 247 214 225 34 chr1 161650966 161651055 -81013298 - L2 LINE L2 -9 3263 3158 2087 114 27 17 chr1 161651130 161651427 -81012926 + AluSx SINE Alu 1 300 -12 210 357 41 10 chr1 161651453 161651551 -81012802 - MIR3 SINE MIR -23 185 85 1244 211 148 82 chr1 161652182 161652500 -81011853 + Tigger7 DNA MER2_type 1 2491 0 222 245 0 0 chr1 161652649 161652698 -81011655 + (TAA)n Simple_repeat Simple_repeat 2 50 0 180 254 17 17 chr1 161652832 161652891 -81011462 - L2 LINE L2 -191 3081 3023 2369 91 0 7 chr1 161653245 161653554 -81010799 - AluSq SINE Alu -6 307 1 655 221 80 58 chr1 161654152 161654378 -81009975 + MER106A DNA MER1_type 6 236 0 658 248 92 99 chr1 161654430 161654833 -81009520 - MLT1J LTR MaLR -105 406 7 2043 147 0 3 chr1 161655769 161656061 -81008292 - AluJb SINE Alu -21 291 1 2347 92 3 6 chr1 161656114 161656428 -81007925 - AluSp SINE Alu 0 313 1 22 0 0 0 chr1 161656449 161656471 -81007882 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 161656479 161656501 -81007852 + AT_rich Low_complexity Low_complexity 1 22 0 369 304 10 20 chr1 161657019 161657121 -81007232 + L2 LINE L2 3209 3309 -4 284 353 142 16 chr1 161657197 161657647 -81006706 - L2 LINE L2 -514 2800 2294 292 364 109 6 chr1 161657799 161658112 -81006241 + L2 LINE L2 2051 2395 -919 1191 223 21 0 chr1 161658112 161658345 -81006008 + MIR SINE MIR 4 241 -21 268 351 75 75 chr1 161658350 161658829 -81005524 + L2 LINE L2 2377 2855 -459 26 64 0 0 chr1 161659716 161659763 -81004590 + AT_rich Low_complexity Low_complexity 1 47 0 3007 44 0 3 chr1 161661129 161661493 -81002860 - L1PA7 LINE L1 -2 6152 5790 393 279 111 12 chr1 161662364 161662536 -81001817 - MER5A DNA MER1_type 0 189 1 1545 153 3 80 chr1 161662906 161663219 -81001134 - AluJb SINE Alu -23 289 1 336 48 0 0 chr1 161664095 161664137 -81000216 + (TG)n Simple_repeat Simple_repeat 1 42 0 436 255 71 36 chr1 161664240 161664444 -80999909 - L1M4 LINE L1 -692 5486 5273 4046 187 47 11 chr1 161664490 161665636 -80998717 - L1MB8 LINE L1 -1 6177 4992 4565 161 8 43 chr1 161665657 161666339 -80998014 - L1PA16 LINE L1 -9 7595 6890 2144 101 40 48 chr1 161666339 161666717 -80997636 - THE1C LTR MaLR 0 375 1 4565 161 8 43 chr1 161666717 161666868 -80997485 - L1PA16 LINE L1 -714 6890 6735 2374 89 0 3 chr1 161666868 161667172 -80997181 - AluSq SINE Alu -10 303 1 4565 161 8 43 chr1 161667172 161667192 -80997161 - L1PA16 LINE L1 -869 6735 6716 2394 94 0 10 chr1 161667192 161667501 -80996852 - AluY SINE Alu -5 306 1 4565 161 8 43 chr1 161667501 161668358 -80995995 - L1PA16 LINE L1 -888 6716 5919 1343 223 39 6 chr1 161668345 161668708 -80995645 - L1MB8 LINE L1 -1141 5005 4631 * 1995 226 50 0 chr1 161668708 161669208 -80995145 + L1M4 LINE L1 3805 4329 -1817 2031 97 0 29 chr1 161669208 161669519 -80994834 - L1PA14 LINE L1 -2 6159 5858 1096 136 11 5 chr1 161669519 161669703 -80994650 + L1PA14 LINE L1 5676 5860 -301 12609 147 50 4 chr1 161669703 161672833 -80991520 - L1PA16 LINE L1 -4896 2685 2 432 222 0 0 chr1 161672835 161672934 -80991419 + L1M4 LINE L1 4320 4418 -1728 321 243 184 0 chr1 161672938 161673041 -80991312 + FLAM_C SINE Alu 6 127 -6 818 218 0 0 chr1 161673050 161673247 -80991106 + L1M4 LINE L1 4412 4608 -1538 208 315 55 14 chr1 161673369 161673442 -80990911 - L2 LINE L2 -47 3266 3191 21 0 0 0 chr1 161673442 161673463 -80990890 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 161673900 161673926 -80990427 + AT_rich Low_complexity Low_complexity 1 26 0 861 158 0 0 chr1 161673948 161674106 -80990247 + CT-rich Low_complexity Low_complexity 3 160 0 1753 169 0 53 chr1 161674106 161674426 -80989927 - AluJo SINE Alu -5 307 5 365 183 344 15 chr1 161675333 161675464 -80988889 - L2 LINE L2 0 3313 3140 285 262 77 71 chr1 161675465 161675679 -80988674 - L2 LINE L2 -302 3011 2791 248 377 57 6 chr1 161675811 161675970 -80988383 - L2 LINE L2 -1780 1534 1368 21 57 0 0 chr1 161676135 161676170 -80988183 + AT_rich Low_complexity Low_complexity 1 35 0 242 255 147 45 chr1 161676189 161676346 -80988007 - L1 LINE L1 -2213 3933 3761 349 264 93 50 chr1 161676813 161676995 -80987358 - MIR SINE MIR -3 259 70 29 0 0 0 chr1 161677121 161677150 -80987203 + AT_rich Low_complexity Low_complexity 1 29 0 1002 203 0 79 chr1 161677584 161677811 -80986542 - MER63A DNA MER1_type 0 210 2 1905 140 40 20 chr1 161678046 161678346 -80986007 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr1 161678759 161678781 -80985572 + AT_rich Low_complexity Low_complexity 1 22 0 609 276 0 65 chr1 161679414 161679536 -80984817 - MER5A DNA MER1_type -2 187 80 1627 163 3 48 chr1 161679536 161679854 -80984499 - AluJb SINE Alu 0 305 1 609 276 0 65 chr1 161679854 161679929 -80984424 - MER5A DNA MER1_type -109 80 2 211 171 0 24 chr1 161680085 161680126 -80984227 + L2 LINE L2 3217 3256 -16 22 0 0 0 chr1 161680459 161680481 -80983872 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1 161682975 161683001 -80981352 + AT_rich Low_complexity Low_complexity 1 26 0 201 260 32 81 chr1 161683064 161683187 -80981166 - L2 LINE L2 -8 3305 3189 207 0 0 0 chr1 161684173 161684196 -80980157 + (T)n Simple_repeat Simple_repeat 1 23 0 694 246 206 71 chr1 161684499 161684801 -80979552 - L2 LINE L2 0 3313 2944 1879 164 10 6 chr1 161684801 161685112 -80979241 + AluJb SINE Alu 1 312 0 694 246 206 71 chr1 161685112 161685203 -80979150 - L2 LINE L2 -369 2944 2867 2849 115 46 45 chr1 161685217 161685824 -80978529 + MER4B LTR ERV1 1 778 -1 1538 182 52 15 chr1 161685975 161686299 -80978054 - MER58B DNA MER1_type 0 341 6 1651 172 11 4 chr1 161686311 161686645 -80977708 - AluJb SINE Alu 0 336 1 1824 175 10 29 chr1 161686827 161687141 -80977212 - AluJb SINE Alu -4 308 1 492 362 50 13 chr1 161687716 161688101 -80976252 - L2 LINE L2 -210 3103 2698 388 209 95 34 chr1 161688142 161688336 -80976017 - MER34 LTR ERV1 0 737 385 2312 136 24 64 chr1 161688580 161689030 -80975323 - MSTB1 LTR MaLR 0 432 1 24 53 0 0 chr1 161691102 161691140 -80973213 + AT_rich Low_complexity Low_complexity 1 38 0 1909 192 50 130 chr1 161691306 161691396 -80972957 + L1MB7 LINE L1 5369 5465 -719 1564 206 0 21 chr1 161691396 161691687 -80972666 - AluJo SINE Alu -27 285 1 1909 192 50 130 chr1 161691687 161692208 -80972145 + L1MB7 LINE L1 5465 5892 -292 1633 182 158 3 chr1 161692208 161692570 -80971783 + MER47B DNA MER2_type 1 418 0 1909 192 50 130 chr1 161692570 161692832 -80971521 + L1MB7 LINE L1 5892 6173 -11 351 96 0 0 chr1 161692891 161692943 -80971410 + (TCC)n Simple_repeat Simple_repeat 1 52 0 302 301 49 42 chr1 161693477 161693620 -80970733 + L2 LINE L2 3170 3313 0 4691 167 19 22 chr1 161693697 161694603 -80969750 - MER4D LTR ERV1 0 903 1 2181 125 20 3 chr1 161695389 161695694 -80968659 - AluSx SINE Alu -2 310 1 878 324 101 29 chr1 161695876 161696392 -80967961 - L3 LINE CR1 -403 1174 622 2465 104 34 14 chr1 161697710 161698067 -80966286 - THE1B LTR MaLR 0 364 1 11375 89 18 15 chr1 161698067 161699159 -80965194 - THE1B-int LTR MaLR 0 1580 480 2458 87 0 3 chr1 161699159 161699469 -80964884 - AluY SINE Alu -2 309 1 11375 89 18 15 chr1 161699469 161699951 -80964402 - THE1B-int LTR MaLR -1100 480 1 2421 123 28 14 chr1 161699951 161700310 -80964043 - THE1B LTR MaLR 0 364 1 272 271 0 0 chr1 161700320 161700390 -80963963 + (TG)n Simple_repeat Simple_repeat 1 70 0 314 289 104 40 chr1 161700847 161701020 -80963333 + L1ME2 LINE L1 5768 5951 -213 22 0 0 0 chr1 161701075 161701097 -80963256 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 161701220 161701250 -80963103 + AT_rich Low_complexity Low_complexity 1 30 0 590 295 147 27 chr1 161701445 161701893 -80962460 - L2 LINE L2 -1017 2297 1796 1541 215 87 20 chr1 161701931 161702369 -80961984 + MLT1C LTR MaLR 1 467 0 953 132 0 24 chr1 161702460 161702627 -80961726 + MSTC LTR MaLR 58 220 -208 382 365 99 25 chr1 161702636 161703269 -80961084 - L2 LINE L2 -1665 1649 970 2940 168 41 34 chr1 161703406 161703832 -80960521 + L1MB4 LINE L1 5481 5902 -278 2074 184 21 37 chr1 161703832 161704261 -80960092 - MSTC LTR MaLR -3 425 4 2940 168 41 34 chr1 161704261 161704425 -80959928 + L1MB4 LINE L1 5902 6079 -101 1369 241 71 8 chr1 161704425 161704777 -80959576 - MLT1A2 LTR MaLR 0 374 1 2940 168 41 34 chr1 161704777 161704839 -80959514 + L1MB4 LINE L1 6079 6139 -41 * 4666 137 38 11 chr1 161704817 161705658 -80958695 + L1MC1 LINE L1 5452 6315 -18 183 113 57 0 chr1 161705701 161705754 -80958599 + (TA)n Simple_repeat Simple_repeat 1 56 0 4954 129 78 4 chr1 161705806 161706640 -80957713 + MER4D LTR ERV1 1 896 -7 2380 208 51 111 chr1 161706885 161707232 -80957121 - MER21B LTR ERV1 -58 805 439 1726 171 10 36 chr1 161707232 161707536 -80956817 + AluJo SINE Alu 1 296 -16 2380 208 51 111 chr1 161707536 161708033 -80956320 - MER21B LTR ERV1 -424 439 12 3862 146 32 12 chr1 161708462 161709120 -80955233 - LTR51 LTR ERV1 0 671 1 1808 201 75 73 chr1 161709334 161710027 -80954326 + LTR48 LTR ERV1 1 644 0 1315 138 32 6 chr1 161710256 161710682 -80953671 - LTR54 LTR ERV1 0 510 14 621 149 57 91 chr1 161711011 161711080 -80953273 - MIR SINE MIR -2 260 190 2134 177 199 38 chr1 161711080 161711758 -80952595 - LTR48 LTR ERV1 0 787 1 621 149 57 91 chr1 161711758 161711863 -80952490 - MIR SINE MIR -72 190 92 210 118 0 0 chr1 161712288 161712322 -80952031 + (TTA)n Simple_repeat Simple_repeat 2 35 0 227 179 0 0 chr1 161712323 161712362 -80951991 - MIR SINE MIR -119 143 105 207 0 0 0 chr1 161713679 161713702 -80950651 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 256 323 11 43 chr1 161714217 161714310 -80950043 + MIR3 SINE MIR 91 180 -28 207 328 0 0 chr1 161714474 161714532 -80949821 - L2 LINE L2 -15 3257 3200 2269 105 3 0 chr1 161714539 161714868 -80949485 + AluSp SINE Alu 1 330 0 366 321 9 0 chr1 161715223 161715332 -80949021 + MIR SINE MIR 14 123 -139 336 255 147 57 chr1 161715513 161715644 -80948709 - MIR SINE MIR -80 182 33 1808 155 28 3 chr1 161715644 161715928 -80948425 - AluJb SINE Alu -13 299 9 336 255 147 57 chr1 161715928 161715953 -80948400 - MIR SINE MIR -229 33 12 227 244 0 0 chr1 161716794 161716835 -80947518 + polypyrimidine Low_complexity Low_complexity 2 42 0 1377 181 56 38 chr1 161716840 161717128 -80947225 - AluJo SINE Alu -19 293 1 723 184 7 0 chr1 161717667 161717808 -80946545 + L1M4 LINE L1 4609 4750 -1396 712 183 114 0 chr1 161717820 161717951 -80946402 + FAM SINE Alu 18 163 -22 974 222 29 4 chr1 161717959 161718198 -80946155 + L1M4 LINE L1 4744 4988 -1158 2742 99 0 0 chr1 161718246 161718601 -80945752 - THE1B LTR MaLR -9 355 1 667 281 110 46 chr1 161719590 161720007 -80944346 + L2 LINE L2 1946 2389 -925 1185 288 191 40 chr1 161720038 161721139 -80943214 - L2 LINE L2 0 3313 2031 21 0 0 0 chr1 161721185 161721206 -80943147 + AT_rich Low_complexity Low_complexity 1 21 0 672 87 0 0 chr1 161721311 161721403 -80942950 + L1M1 LINE L1 5644 5735 -569 181 224 35 71 chr1 161722236 161722284 -80942069 - MER5B DNA MER1_type -12 166 121 2493 130 0 2 chr1 161722284 161722683 -80941670 - L1MA5 LINE L1 -3 6297 5900 181 224 35 71 chr1 161722683 161722719 -80941634 - MER5B DNA MER1_type -57 121 85 2167 117 13 0 chr1 161722739 161723038 -80941315 - AluSx SINE Alu -9 303 1 246 32 0 0 chr1 161724624 161724655 -80939698 + (TG)n Simple_repeat Simple_repeat 2 32 0 618 243 169 16 chr1 161724830 161725143 -80939210 + L2 LINE L2 1432 1792 -1522 1373 168 0 13 chr1 161725144 161725370 -80938983 + AluJb SINE Alu 1 223 -89 1499 243 123 101 chr1 161725386 161725905 -80938448 + L2 LINE L2 1899 2405 -908 216 67 0 0 chr1 161725905 161725935 -80938418 + (CATCC)n Simple_repeat Simple_repeat 1 30 0 1499 243 123 101 chr1 161725935 161726782 -80937571 + L2 LINE L2 2405 3313 0 350 293 155 29 chr1 161727914 161728088 -80936265 + L3 LINE CR1 1298 1493 -84 688 115 0 0 chr1 161728605 161728701 -80935652 - AluJb SINE Alu -15 297 202 22 35 0 0 chr1 161729144 161729173 -80935180 + AT_rich Low_complexity Low_complexity 1 29 0 37 62 0 0 chr1 161731275 161731340 -80933013 + AT_rich Low_complexity Low_complexity 1 65 0 1885 266 151 29 chr1 161731725 161732775 -80931578 - HAL1 LINE L1 -1104 1403 226 3873 193 90 11 chr1 161733107 161733850 -80930503 - MER21B LTR ERV1 -61 802 1 6853 204 53 50 chr1 161734684 161737068 -80927285 - L1M4c LINE L1 -4003 2643 180 2158 120 7 7 chr1 161737068 161737376 -80926977 - AluSq SINE Alu -5 308 1 6853 204 53 50 chr1 161737376 161737554 -80926799 - L1M4c LINE L1 -6466 180 4 271 229 0 33 chr1 161737623 161737684 -80926669 + 7SK RNA RNA 4 62 -131 434 287 7 35 chr1 161738563 161738706 -80925647 + MIR SINE MIR 62 200 -62 1976 155 0 10 chr1 161738718 161739014 -80925339 + AluJb SINE Alu 1 293 -19 181 256 64 39 chr1 161739989 161740067 -80924286 - MIR SINE MIR -117 145 66 2182 263 63 24 chr1 161740480 161741541 -80922812 - L2 LINE L2 -1 3312 2210 1357 199 57 60 chr1 161741606 161742022 -80922331 + MLT1C LTR MaLR 37 467 0 650 288 68 23 chr1 161742022 161742286 -80922067 - L2 LINE L2 -1097 2217 1942 1064 262 61 72 chr1 161742652 161743163 -80921190 - L2 LINE L2 -1367 1947 1443 284 237 0 53 chr1 161745494 161745570 -80918783 + C-rich Low_complexity Low_complexity 3 74 0 871 340 79 57 chr1 161745633 161746883 -80917470 - L2 LINE L2 -1808 1506 229 1259 186 17 8 chr1 161747015 161747251 -80917102 + MIR SINE MIR 1 238 -24 2657 203 82 41 chr1 161748676 161749734 -80914619 - L1ME2 LINE L1 -44 6189 5084 741 206 35 0 chr1 161749745 161749886 -80914467 - AluJb SINE Alu -19 293 148 2983 168 12 6 chr1 161749889 161750528 -80913825 - L1M1 LINE L1 -743 5403 4796 639 194 39 58 chr1 161750526 161750732 -80913621 - L1ME2 LINE L1 -1117 5098 4897 * 245 102 72 36 chr1 161750758 161750924 -80913429 + (TATAA)n Simple_repeat Simple_repeat 3 174 0 21 0 0 0 chr1 161750924 161750945 -80913408 + AT_rich Low_complexity Low_complexity 1 21 0 521 66 78 18 chr1 161750991 161751158 -80913195 + (TA)n Simple_repeat Simple_repeat 2 178 0 867 254 105 37 chr1 161751175 161751408 -80912945 - L1ME2 LINE L1 -1319 4896 4625 737 187 42 75 chr1 161751408 161751622 -80912731 - MER3 DNA MER1_type -1 208 2 867 254 105 37 chr1 161751622 161751770 -80912583 - L1ME2 LINE L1 -1590 4625 4489 615 247 21 11 chr1 161751781 161751971 -80912382 - L1ME2 LINE L1 -3470 2745 2554 387 202 10 10 chr1 161751996 161752095 -80912258 - L1ME2 LINE L1 -4097 2299 2201 1071 250 70 57 chr1 161752141 161752653 -80911700 - L1ME2 LINE L1 -4482 1914 1396 369 0 0 0 chr1 161752654 161752695 -80911658 + (TG)n Simple_repeat Simple_repeat 2 42 0 959 289 91 56 chr1 161752756 161753523 -80910830 - L1ME2 LINE L1 -5391 1005 212 239 315 19 19 chr1 161753524 161753632 -80910721 - L1ME2 LINE L1 -6254 142 35 656 261 97 80 chr1 161754145 161754456 -80909897 - MLT1J2 LTR MaLR -114 336 21 221 288 0 17 chr1 161754581 161754640 -80909713 + CT-rich Low_complexity Low_complexity 6 63 0 208 246 116 0 chr1 161754656 161754725 -80909628 - L2 LINE L2 -42 3230 3154 259 363 103 75 chr1 161755384 161755822 -80908531 - L2 LINE L2 0 3272 2823 713 189 50 0 chr1 161755881 161756040 -80908313 - L1MC1 LINE L1 -6 6607 6441 1385 110 14 10 chr1 161756040 161756249 -80908104 + L1PB1 LINE L1 5685 5894 -257 * 9789 201 46 59 chr1 161756247 161757869 -80906484 - L1MC1 LINE L1 -667 5957 4315 2226 104 0 35 chr1 161757869 161758185 -80906168 + AluSx SINE Alu 5 309 -3 9789 201 46 59 chr1 161758185 161758858 -80905495 - L1MC1 LINE L1 -2309 4315 3635 682 148 0 0 chr1 161758858 161758959 -80905394 - FRAM SINE Alu -39 137 37 9789 201 46 59 chr1 161758959 161760424 -80903929 - L1MC1 LINE L1 -2989 3635 2159 435 197 0 0 chr1 161760424 161760500 -80903853 + Tigger5 DNA MER2_type 4 79 -2244 1629 142 169 16 chr1 161760562 161760928 -80903425 - L1MC1 LINE L1 -4264 2162 1741 718 192 6 6 chr1 161760934 161761101 -80903252 + CT-rich Low_complexity Low_complexity 4 170 0 244 189 27 27 chr1 161761115 161761189 -80903164 + CT-rich Low_complexity Low_complexity 3 76 0 6549 162 84 64 chr1 161761217 161762416 -80901937 - L1MC1 LINE L1 -4762 1664 423 2399 56 7 13 chr1 161762416 161762719 -80901634 + AluY SINE Alu 7 307 -4 6549 162 84 64 chr1 161762719 161763121 -80901232 - L1MC1 LINE L1 -6003 423 31 1414 162 100 44 chr1 161763160 161763467 -80900886 + AluJo SINE Alu 1 322 0 291 172 0 17 chr1 161763475 161763533 -80900820 + MER94 DNA DNA 38 94 -40 390 261 11 0 chr1 161763581 161763669 -80900684 - MIR SINE MIR -168 94 6 21 0 0 0 chr1 161763806 161763827 -80900526 + AT_rich Low_complexity Low_complexity 1 21 0 469 256 81 29 chr1 161764051 161764223 -80900130 + MIR SINE MIR 12 192 -70 3490 248 65 51 chr1 161764514 161766113 -80898240 - HAL1 LINE L1 0 2507 887 321 335 41 16 chr1 161766191 161766385 -80897968 + L1M4 LINE L1 3554 3752 -2394 32018 107 11 59 chr1 161766489 161768631 -80895722 + L1PA8 LINE L1 19 2263 -3909 2256 83 4 0 chr1 161768631 161768908 -80895445 - AluY SINE Alu -17 294 17 32018 107 11 59 chr1 161768908 161769274 -80895079 + L1PA8 LINE L1 2263 2645 -3527 2043 117 7 0 chr1 161769274 161769557 -80894796 + AluSg SINE Alu 1 285 -25 297 0 0 0 chr1 161769557 161769590 -80894763 + (CA)n Simple_repeat Simple_repeat 2 34 0 32018 107 11 59 chr1 161769590 161773544 -80890809 + L1PA8 LINE L1 2643 6163 -9 398 292 208 14 chr1 161773665 161773809 -80890544 - MIR3 SINE MIR -27 181 10 261 0 0 0 chr1 161774498 161774527 -80889826 + (T)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr1 161775299 161775330 -80889023 + AT_rich Low_complexity Low_complexity 1 31 0 1007 340 129 20 chr1 161776722 161777566 -80886787 - L2 LINE L2 -387 2927 1992 3123 32 0 0 chr1 161777979 161778348 -80886005 - L1PA3 LINE L1 -3 6152 5784 5564 23 10 0 chr1 161778348 161779395 -80884958 + L1PA3 LINE L1 4723 5775 -380 205 337 87 0 chr1 161779623 161779715 -80884638 - L2 LINE L2 -960 2354 2255 24 0 0 0 chr1 161781360 161781384 -80882969 + AT_rich Low_complexity Low_complexity 1 24 0 258 257 27 0 chr1 161781700 161781774 -80882579 + CT-rich Low_complexity Low_complexity 4 79 0 180 240 0 40 chr1 161781775 161781825 -80882528 + MIR SINE MIR 105 152 -110 180 0 0 0 chr1 161782465 161782485 -80881868 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 506 322 121 59 chr1 161782504 161783568 -80880785 - L2 LINE L2 0 3272 2153 21 36 0 0 chr1 161783758 161783786 -80880567 + AT_rich Low_complexity Low_complexity 1 28 0 571 285 237 22 chr1 161784358 161784924 -80879429 - L2 LINE L2 -4 3309 2627 707 262 42 0 chr1 161784930 161785098 -80879255 - MER69A DNA AcHobo 0 177 3 383 292 79 33 chr1 161785112 161785352 -80879001 - L2 LINE L2 -756 2558 2308 1727 183 25 19 chr1 161787213 161787574 -80876779 - MLT1A1 LTR MaLR -2 363 1 5309 32 0 0 chr1 161787919 161788540 -80875813 + L1PA3 LINE L1 5535 6155 0 674 222 105 77 chr1 161791151 161791399 -80872954 + MIR SINE MIR 2 256 -6 402 276 91 95 chr1 161894005 161894237 -80770116 + MIR SINE MIR 5 235 -27 746 248 70 32 chr1 161894244 161894739 -80769614 - MLT1L LTR MaLR -2 613 82 1936 121 59 7 chr1 161895449 161895739 -80768614 - AluSx SINE Alu -7 305 1 257 86 0 0 chr1 161895853 161895888 -80768465 + MADE1 DNA Mariner 13 47 -33 202 78 98 0 chr1 161895888 161895939 -80768414 + (TA)n Simple_repeat Simple_repeat 1 56 0 23 54 0 0 chr1 161898911 161898948 -80765405 + AT_rich Low_complexity Low_complexity 1 37 0 210 141 31 31 chr1 161899155 161899219 -80765134 + CT-rich Low_complexity Low_complexity 1 64 0 2153 106 0 0 chr1 161899817 161900129 -80764224 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 161901839 161901860 -80762493 + AT_rich Low_complexity Low_complexity 1 21 0 1959 122 3 14 chr1 161903490 161903786 -80760567 + AluSx SINE Alu 1 293 -19 39959 71 7 5 chr1 161910278 161916423 -80747930 - L1PA5 LINE L1 -2 6152 3 271 313 97 15 chr1 161916535 161916730 -80747623 - L1M4 LINE L1 -1908 4238 4028 2269 214 77 38 chr1 161916871 161917577 -80746776 - L1M4 LINE L1 -903 5243 4511 1903 37 0 0 chr1 161918131 161918346 -80746007 + AluY SINE Alu 81 295 -16 235 266 97 53 chr1 161918462 161918575 -80745778 + L3 LINE CR1 1375 1492 -85 21 0 0 0 chr1 161918836 161918857 -80745496 + AT_rich Low_complexity Low_complexity 1 21 0 870 276 113 62 chr1 161919501 161919700 -80744653 - L2 LINE L2 -1 3312 3125 243 0 0 0 chr1 161919700 161919727 -80744626 + (TG)n Simple_repeat Simple_repeat 2 28 0 870 276 113 62 chr1 161919727 161920203 -80744150 - L2 LINE L2 -188 3125 2575 1819 150 3 33 chr1 161920203 161920510 -80743843 + AluSx SINE Alu 1 298 -14 870 276 113 62 chr1 161920510 161920716 -80743637 - L2 LINE L2 -738 2575 2381 25 51 0 0 chr1 161922365 161922404 -80741949 + AT_rich Low_complexity Low_complexity 1 39 0 562 240 60 20 chr1 161922652 161922802 -80741551 - L1ME3A LINE L1 -55 6115 5960 836 247 84 3 chr1 161922804 161923122 -80741231 - L1ME3A LINE L1 -307 5863 5491 2474 160 35 14 chr1 161923508 161923996 -80740357 - L1MB2 LINE L1 0 6171 5674 2624 219 39 12 chr1 161923996 161924666 -80739687 - L1MB2 LINE L1 -820 5326 4639 572 304 55 8 chr1 161924689 161924942 -80739411 - L1MB2 LINE L1 -1876 4270 4006 371 261 145 55 chr1 161924955 161925280 -80739073 - L1MB2 LINE L1 -2192 3954 3601 419 285 144 44 chr1 161925717 161926285 -80738068 - L1MEd LINE L1 -4888 1231 607 262 304 67 70 chr1 161926381 161926651 -80737702 - L1MEd LINE L1 -5750 369 101 612 222 257 0 chr1 161927943 161928114 -80736239 + MER58C DNA MER1_type 1 215 0 22 0 0 0 chr1 161928209 161928231 -80736122 + AT_rich Low_complexity Low_complexity 1 22 0 376 358 98 0 chr1 161928339 161928554 -80735799 + MIR SINE MIR 20 255 -7 1933 98 29 14 chr1 161931325 161931601 -80732752 + AluSx SINE Alu 14 293 -19 227 79 26 0 chr1 161931686 161931724 -80732629 + (CA)n Simple_repeat Simple_repeat 1 39 0 286 147 29 0 chr1 161932073 161932141 -80732212 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 542 272 120 25 chr1 161932143 161932419 -80731934 - L1MC4 LINE L1 -124 7918 7617 2193 116 0 0 chr1 161932684 161932976 -80731377 + AluSq SINE Alu 1 292 -21 837 185 0 20 chr1 161933251 161933397 -80730956 + AluJo SINE Alu 3 145 -167 2202 100 3 17 chr1 161933397 161933698 -80730655 + AluSg SINE Alu 1 297 -13 195 42 0 0 chr1 161933731 161933755 -80730598 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1125 142 0 0 chr1 161933755 161933910 -80730443 + AluJo SINE Alu 132 286 -26 489 325 52 11 chr1 161933910 161934101 -80730252 + MIR SINE MIR 24 222 -40 1946 282 171 8 chr1 161934370 161935172 -80729181 + L2 LINE L2 35 967 -2347 1804 184 39 3 chr1 161935172 161935503 -80728850 + MER61A LTR ERV1 1 343 0 4122 118 108 17 chr1 161935506 161936225 -80728128 + MER61A-int LTR ERV1 4 788 -4429 287 100 0 0 chr1 161936205 161936245 -80728108 + MER61A-int LTR ERV1 1320 1359 -3858 * 21603 96 27 21 chr1 161936247 161939312 -80725041 + MER61A-int LTR ERV1 1746 6422 -574 5090 153 30 59 chr1 161939312 161940415 -80723938 - MER11C LTR ERVK 0 1071 1 21603 96 27 21 chr1 161940415 161940703 -80723650 + MER61A-int LTR ERV1 6422 6707 -289 2065 105 36 3 chr1 161940690 161940995 -80723358 + MER61A-int LTR ERV1 4903 5217 0 * 1966 164 39 0 chr1 161940995 161941325 -80723028 + MER61A LTR ERV1 1 343 0 1532 240 96 12 chr1 161941325 161941817 -80722536 + L2 LINE L2 964 1496 -1818 4571 130 16 29 chr1 161941859 161942627 -80721726 - MER4E LTR ERV1 -8 758 1 1845 237 123 10 chr1 161942627 161943204 -80721149 + L2 LINE L2 1564 2205 -1109 292 265 22 7 chr1 161943294 161943430 -80720923 + (TA)n Simple_repeat Simple_repeat 1 138 0 54 87 0 0 chr1 161943462 161943600 -80720753 + AT_rich Low_complexity Low_complexity 1 138 0 488 157 12 29 chr1 161943606 161943778 -80720575 + (TA)n Simple_repeat Simple_repeat 1 169 0 274 135 45 38 chr1 161943796 161943929 -80720424 + (TA)n Simple_repeat Simple_repeat 1 134 0 435 292 83 7 chr1 161944084 161944228 -80720125 - MIR SINE MIR -96 166 12 398 228 44 96 chr1 161944239 161944375 -80719978 + L2 LINE L2 3144 3272 0 2115 124 0 40 chr1 161945616 161945938 -80718415 + AluSx SINE Alu 4 312 0 339 312 56 16 chr1 161945954 161946079 -80718274 - L2 LINE L2 0 3313 3184 198 316 10 41 chr1 161946633 161946731 -80717622 + MIR SINE MIR 103 197 -65 2067 112 0 65 chr1 161947071 161947394 -80716959 + AluSx SINE Alu 1 302 -10 1667 165 3 68 chr1 161947492 161947813 -80716540 - AluJb SINE Alu -12 300 1 247 253 24 24 chr1 161949000 161949083 -80715270 - MIR SINE MIR -100 162 80 317 254 0 0 chr1 161949791 161949858 -80714495 - MLT1K LTR MaLR -2 586 520 423 306 95 50 chr1 161951069 161951174 -80713179 - MIR SINE MIR -9 253 154 3415 112 138 65 chr1 161951174 161951818 -80712535 + LTR8 LTR ERV1 1 691 0 423 306 95 50 chr1 161951818 161951954 -80712399 - MIR SINE MIR -108 154 1 21 36 0 0 chr1 161953072 161953100 -80711253 + AT_rich Low_complexity Low_complexity 1 28 0 2200 93 0 0 chr1 161953100 161953406 -80710947 + AluSg SINE Alu 1 306 0 240 35 0 0 chr1 161954041 161954070 -80710283 + (TG)n Simple_repeat Simple_repeat 2 30 0 478 155 21 0 chr1 161954181 161954278 -80710075 + (TA)n Simple_repeat Simple_repeat 2 100 0 219 69 0 0 chr1 161956869 161956898 -80707455 + (A)n Simple_repeat Simple_repeat 1 29 0 1649 184 3 13 chr1 161957139 161957438 -80706915 + AluJo SINE Alu 1 296 -16 862 230 49 65 chr1 161958961 161959331 -80705022 - HAL1 LINE L1 -37 2470 2107 2203 247 94 51 chr1 161959369 161959394 -80704959 - HAL1 LINE L1 -481 2026 2004 1853 186 13 43 chr1 161959394 161959770 -80704583 + MLT1A1 LTR MaLR 1 365 0 2203 247 94 51 chr1 161959770 161961077 -80703276 - HAL1 LINE L1 -503 2004 617 536 263 130 20 chr1 161961154 161961454 -80702899 - L1MC4 LINE L1 -15 8027 7695 735 261 39 81 chr1 161961456 161961666 -80702687 - HAL1 LINE L1 -1972 535 344 1906 149 0 0 chr1 161961666 161961997 -80702356 - AluSx SINE Alu 0 331 1 735 261 39 81 chr1 161961997 161962142 -80702211 - HAL1 LINE L1 -2163 344 194 3382 109 93 112 chr1 161962200 161962867 -80701486 + MER39 LTR ERV1 4 659 -48 2686 20 0 0 chr1 161962867 161963165 -80701188 - AluY SINE Alu -13 298 1 3382 109 93 112 chr1 161963165 161963214 -80701139 + MER39 LTR ERV1 659 707 0 237 252 93 60 chr1 161963311 161963462 -80700891 - HAL1 LINE L1 -2329 178 23 487 238 29 63 chr1 161963997 161964047 -80700306 + MER112 DNA MER1_type 1 51 -209 2055 116 0 27 chr1 161964047 161964381 -80699972 + AluSx SINE Alu 1 312 0 487 238 29 63 chr1 161964381 161964634 -80699719 + MER112 DNA MER1_type 51 258 -2 1815 214 67 0 chr1 161964638 161965114 -80699239 + Charlie4a DNA MER1_type 1 508 0 182 220 250 0 chr1 161965990 161966090 -80698263 + L2 LINE L2 2376 2500 -814 1108 137 52 14 chr1 161967176 161967387 -80696966 - MER20 DNA MER1_type 0 219 1 28 0 0 0 chr1 161967439 161967467 -80696886 + AT_rich Low_complexity Low_complexity 1 28 0 239 127 0 18 chr1 161968100 161968155 -80696198 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 201 233 0 17 chr1 161969928 161969988 -80694365 + (CGG)n Simple_repeat Simple_repeat 2 60 0 659 232 104 45 chr1 161972809 161973029 -80691324 - MIR SINE MIR 0 262 30 423 328 1 9 chr1 161973038 161973194 -80691159 + MIR SINE MIR 39 191 -56 2029 157 126 22 chr1 161973383 161973836 -80690517 - MLT1D LTR MaLR 0 505 6 256 187 269 28 chr1 161973967 161974149 -80690204 - Charlie7 DNA MER1_type -78 2534 2309 * 622 209 237 12 chr1 161974145 161974398 -80689955 - Charlie7 DNA MER1_type -2078 534 225 311 193 155 0 chr1 161974611 161974691 -80689662 + MIR SINE MIR 54 143 -65 24 32 0 0 chr1 161975372 161975403 -80688950 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 161976319 161976340 -80688013 + AT_rich Low_complexity Low_complexity 1 21 0 239 152 22 0 chr1 161976450 161976496 -80687857 + MIR SINE MIR 195 241 -21 654 250 85 73 chr1 161976773 161977021 -80687332 - MIR SINE MIR -10 252 2 194 264 29 114 chr1 161977021 161977093 -80687260 + MIR SINE MIR 84 143 -65 22 35 0 0 chr1 161977862 161977891 -80686462 + AT_rich Low_complexity Low_complexity 1 29 0 372 183 97 0 chr1 161977917 161978010 -80686343 - MER2 DNA MER2_type -135 210 109 611 212 93 0 chr1 161978091 161978242 -80686111 - MER2 DNA MER2_type -180 165 1 224 59 29 0 chr1 161978670 161978704 -80685649 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2389 80 3 10 chr1 161978876 161979177 -80685176 + AluSp SINE Alu 2 300 -13 1699 152 138 0 chr1 161979202 161979498 -80684855 + MER1B DNA MER1_type 1 337 0 713 314 144 65 chr1 161981381 161982527 -80681826 - L2 LINE L2 -343 2971 1736 209 218 129 59 chr1 161982527 161982628 -80681725 - MIR SINE MIR -1 261 154 195 114 0 0 chr1 161982660 161982695 -80681658 + (TCCG)n Simple_repeat Simple_repeat 2 36 0 266 0 29 0 chr1 161982695 161982729 -80681624 + (TTTCC)n Simple_repeat Simple_repeat 5 39 0 1217 170 0 18 chr1 161982729 161982947 -80681406 - AluJb SINE Alu -32 280 67 181 170 264 0 chr1 161982991 161983044 -80681309 - MIR SINE MIR -122 140 74 211 367 56 11 chr1 161983299 161983389 -80680964 + MIR3 SINE MIR 8 101 -107 1946 141 0 3 chr1 161983404 161983695 -80680658 + AluJb SINE Alu 1 290 -22 2449 179 32 2 chr1 161983695 161984197 -80680156 - L1ME2 LINE L1 -22 6142 5626 793 295 92 37 chr1 161984259 161984848 -80679505 + L1MC4 LINE L1 7422 8042 0 380 208 145 30 chr1 161984926 161985195 -80679158 - L1ME2 LINE L1 -2694 3452 3153 344 261 121 18 chr1 161985320 161985600 -80678753 - L1ME2 LINE L1 -3155 2991 2683 344 281 61 18 chr1 161985662 161985826 -80678527 - L1ME2 LINE L1 -3557 2589 2419 255 302 0 40 chr1 161986767 161986893 -80677460 - HAL1 LINE L1 -603 1904 1784 891 325 68 38 chr1 161987269 161987956 -80676397 - L1M4 LINE L1 -1896 4250 3543 21 0 0 0 chr1 161988954 161988975 -80675378 + AT_rich Low_complexity Low_complexity 1 21 0 570 331 22 0 chr1 161990592 161990773 -80673580 + L3 LINE CR1 1054 1238 -339 22 35 0 0 chr1 161990859 161990888 -80673465 + AT_rich Low_complexity Low_complexity 1 29 0 949 135 20 45 chr1 161991132 161991275 -80673078 + MER33 DNA MER1_type 1 131 -2415 2019 78 4 8 chr1 161991275 161991531 -80672822 + AluSx SINE Alu 44 298 -14 949 135 20 45 chr1 161991531 161991588 -80672765 + MER33 DNA MER1_type 131 188 -97 307 292 108 8 chr1 161991848 161991968 -80672385 - L2 LINE L2 0 3313 3182 2681 153 4 76 chr1 161996198 161996722 -80667631 - MER66B LTR ERV1 0 486 1 10365 107 52 31 chr1 161996722 161998440 -80665913 - MER66B-int LTR ERV1 0 6676 4924 423 252 24 0 chr1 161998443 161998566 -80665787 + MER66-int LTR ERV1 4341 4466 -2210 261 154 0 62 chr1 161998692 161998757 -80665596 + MER72 LTR ERV1 5 65 -657 2436 115 20 65 chr1 161998758 161999105 -80665248 - MER66-int LTR ERV1 -2275 4401 4083 2233 85 10 23 chr1 161999105 161999411 -80664942 - AluSc SINE Alu -5 304 3 2436 115 20 65 chr1 161999411 161999568 -80664785 - MER66-int LTR ERV1 -2593 4083 3920 1764 158 143 31 chr1 161999568 161999953 -80664400 + MSTA LTR MaLR 1 428 0 5950 205 24 3 chr1 161999953 162001170 -80663183 + MSTA-int LTR MaLR 1 1242 -409 1297 148 81 46 chr1 162001170 162001453 -80662900 + MSTA LTR MaLR 135 427 -1 2219 92 16 22 chr1 162001454 162001822 -80662531 - MER66B-int LTR ERV1 -2752 3924 3559 405 86 0 0 chr1 162001823 162001881 -80662472 + (TTCTG)n Simple_repeat Simple_repeat 2 59 0 347 64 0 0 chr1 162001884 162001931 -80662422 - MER66B-int LTR ERV1 -3226 3450 3404 589 192 48 16 chr1 162001938 162002063 -80662290 - MER66B-int LTR ERV1 -3598 3078 2950 3476 173 57 48 chr1 162002147 162003215 -80661138 - MER66B-int LTR ERV1 -5562 1114 1 2651 169 27 12 chr1 162003215 162003694 -80660659 - MER66B LTR ERV1 0 486 1 21 0 0 0 chr1 162004262 162004283 -80660070 + AT_rich Low_complexity Low_complexity 1 21 0 339 264 54 0 chr1 162004385 162004514 -80659839 - L1ME LINE L1 -390 5772 5637 2032 156 15 0 chr1 162004663 162004990 -80659363 + MER1B DNA MER1_type 8 339 0 715 125 0 0 chr1 162006378 162006482 -80657871 + L1PA10 LINE L1 6055 6158 -10 27 0 0 0 chr1 162006782 162006809 -80657544 + AT_rich Low_complexity Low_complexity 1 27 0 335 260 62 0 chr1 162007784 162007880 -80656473 - L2 LINE L2 -214 3058 2957 7349 23 1 334 chr1 162007899 162009839 -80654514 + SVA Other Other 93 1386 0 660 208 57 94 chr1 162010164 162010429 -80653924 - L1ME1 LINE L1 -5 6161 5907 279 195 73 12 chr1 162010443 162010525 -80653828 - L1ME1 LINE L1 -303 5818 5732 465 299 118 16 chr1 162011292 162011479 -80652874 - MIR SINE MIR -56 206 1 22 0 0 0 chr1 162011537 162011559 -80652794 + AT_rich Low_complexity Low_complexity 1 22 0 258 200 32 53 chr1 162011640 162011735 -80652618 - L1ME4a LINE L1 -102 6019 5927 186 279 0 0 chr1 162011815 162011858 -80652495 - L2 LINE L2 -6 3307 3265 194 274 14 68 chr1 162113682 162113755 -80550598 - L2 LINE L2 -1391 1923 1855 23 54 0 0 chr1 162114092 162114129 -80550224 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr1 162114736 162114766 -80549587 + AT_rich Low_complexity Low_complexity 1 30 0 1843 135 4 4 chr1 162115649 162115971 -80548382 - AluY SINE Alu 0 322 1 254 28 0 28 chr1 162116020 162116056 -80548297 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1247 183 59 3 chr1 162116710 162117000 -80547353 - MER33 DNA MER1_type -3 321 16 277 384 5 38 chr1 162117015 162117200 -80547153 + L2 LINE L2 2467 2645 -669 311 275 35 35 chr1 162117200 162117342 -80547011 + Charlie7 DNA MER1_type 31 172 -2440 394 390 12 0 chr1 162117544 162117708 -80546645 - MER5A DNA MER1_type -9 180 15 2221 128 22 27 chr1 162117708 162118074 -80546279 - THE1B LTR MaLR 0 364 1 220 171 183 61 chr1 162121009 162121091 -80543262 - MIR SINE MIR -51 211 120 517 258 61 0 chr1 162121133 162121265 -80543088 - MIR SINE MIR -109 153 14 663 246 177 66 chr1 162121858 162122448 -80541905 - L2 LINE L2 -141 3172 2536 239 200 147 13 chr1 162122720 162122795 -80541558 - MIR SINE MIR -116 146 62 522 280 55 78 chr1 162122820 162123127 -80541226 - L2 LINE L2 -11 3302 3003 397 332 49 49 chr1 162123162 162123448 -80540905 - L2 LINE L2 -518 2796 2511 269 241 139 28 chr1 162123475 162123583 -80540770 + L2 LINE L2 3189 3308 -5 232 24 24 48 chr1 162123752 162123794 -80540559 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr1 162126615 162126639 -80537714 + (A)n Simple_repeat Simple_repeat 1 24 0 609 193 0 0 chr1 162133564 162133704 -80530649 + CT-rich Low_complexity Low_complexity 1 140 0 239 287 89 20 chr1 162135373 162135474 -80528879 - L2 LINE L2 -9 3263 3156 441 273 16 16 chr1 162136199 162136320 -80528033 - MIR SINE MIR -60 202 82 336 262 111 16 chr1 162138786 162138912 -80525441 - MIR SINE MIR -18 244 107 437 237 35 18 chr1 162138926 162139040 -80525313 + MIR SINE MIR 30 145 -117 251 175 0 16 chr1 162139312 162139375 -80524978 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 180 0 0 0 chr1 162140146 162140166 -80524187 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1544 151 4 33 chr1 162140169 162140441 -80523912 - AluJo SINE Alu -42 270 7 21 0 0 0 chr1 162140813 162140834 -80523519 + AT_rich Low_complexity Low_complexity 1 21 0 265 211 56 0 chr1 162141408 162141479 -80522874 + MIR SINE MIR 113 187 -75 253 343 128 0 chr1 162143923 162144025 -80520328 - L2 LINE L2 -1 3271 3157 670 296 45 12 chr1 162144176 162144423 -80519930 + MIR SINE MIR 2 256 -6 358 264 100 0 chr1 162145108 162145218 -80519135 + MIR SINE MIR 51 171 -91 2826 126 57 0 chr1 162145226 162145693 -80518660 - MER1A DNA MER1_type -7 522 1 256 208 19 0 chr1 162145694 162145747 -80518606 + MIR SINE MIR 165 218 -44 1932 140 29 46 chr1 162145801 162146151 -80518202 - MER2 DNA MER2_type 0 344 1 790 261 325 0 chr1 162146174 162146550 -80517803 - L2 LINE L2 -1 3312 2815 6662 139 40 18 chr1 162148049 162149250 -80515103 - Tigger3b DNA MER2_type 0 1231 4 40 21 0 0 chr1 162149440 162149487 -80514866 + AT_rich Low_complexity Low_complexity 1 47 0 206 348 78 58 chr1 162149828 162150210 -80514143 + L3b LINE CR1 1102 1491 -92 25 0 0 0 chr1 162150920 162150945 -80513408 + AT_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr1 162150961 162151010 -80513343 + AT_rich Low_complexity Low_complexity 1 49 0 2850 129 20 45 chr1 162151277 162151496 -80512857 - L1MA9 LINE L1 0 6312 6089 2161 121 7 0 chr1 162151496 162151801 -80512552 - AluY SINE Alu -4 307 1 2850 129 20 45 chr1 162151801 162152132 -80512221 - L1MA9 LINE L1 -223 6089 5776 228 231 0 0 chr1 162152148 162152200 -80512153 + L1MC4 LINE L1 6652 6703 -1339 312 137 0 0 chr1 162152200 162152251 -80512102 + (CA)n Simple_repeat Simple_repeat 2 52 0 493 90 142 12 chr1 162152254 162152349 -80512004 - L1P4 LINE L1 -383 5780 5672 240 213 0 0 chr1 162152450 162152511 -80511842 + T-rich Low_complexity Low_complexity 1 61 0 367 183 73 0 chr1 162153444 162153526 -80510827 + L1MD3 LINE L1 7904 7991 -4 284 175 17 133 chr1 162153527 162153647 -80510706 + Charlie8 DNA MER1_type 379 484 -1933 188 349 72 43 chr1 162153673 162153882 -80510471 + L2 LINE L2 2717 2931 -383 25 0 0 0 chr1 162154019 162154044 -80510309 + AT_rich Low_complexity Low_complexity 1 25 0 285 281 0 0 chr1 162154159 162154223 -80510130 - L2 LINE L2 -8 3264 3201 328 285 64 121 chr1 162154240 162154489 -80509864 + L2 LINE L2 3032 3266 -6 200 322 44 0 chr1 162154846 162154936 -80509417 + L2 LINE L2 3216 3309 -4 5930 45 3 0 chr1 162155186 162155914 -80508439 - L1PA5 LINE L1 -1 6153 5424 422 262 54 53 chr1 162158454 162158626 -80505727 - MIR SINE MIR -55 207 38 367 244 244 37 chr1 162158636 162158853 -80505500 + MIR SINE MIR 1 262 0 570 202 0 10 chr1 162160522 162160626 -80503727 - Tigger7 DNA MER2_type 0 2587 2485 * 1423 188 47 4 chr1 162160621 162160876 -80503477 - Tigger7 DNA MER2_type -466 267 2 712 331 77 33 chr1 162161273 162161753 -80502600 - L2 LINE L2 -555 2759 2259 581 169 17 68 chr1 162161754 162161872 -80502481 - FLAM_C SINE Alu -11 132 21 275 271 9 75 chr1 162164186 162164241 -80500112 + MLT1F1 LTR MaLR 49 95 -447 2064 196 69 49 chr1 162164241 162164735 -80499618 + MLT1D LTR MaLR 1 504 -1 275 271 9 75 chr1 162164735 162164786 -80499567 + MLT1F1 LTR MaLR 95 148 -394 * 1103 222 75 0 chr1 162164755 162164994 -80499359 + MLT1F1 LTR MaLR 308 564 -3 1925 156 3 12 chr1 162165428 162165761 -80498592 + MER44D DNA MER2_type 1 600 -9 1659 201 23 12 chr1 162166178 162166522 -80497831 - MER7A DNA MER2_type 0 346 1 236 312 39 0 chr1 162166636 162166713 -80497640 - L2 LINE L2 0 3313 3234 231 222 0 0 chr1 162166867 162166948 -80497405 + GA-rich Low_complexity Low_complexity 2 82 0 208 362 47 27 chr1 162166965 162167114 -80497239 - L2 LINE L2 -1333 1981 1830 357 255 119 49 chr1 162167997 162168183 -80496170 - MIR SINE MIR -4 258 51 222 270 21 76 chr1 162168515 162168681 -80495672 - MIR SINE MIR -18 244 93 181 275 242 0 chr1 162169238 162169329 -80495024 - L2 LINE L2 -10 3262 3150 351 0 0 0 chr1 162169639 162169678 -80494675 + (CA)n Simple_repeat Simple_repeat 2 40 0 1754 141 29 61 chr1 162171859 162172171 -80492182 - AluJb SINE Alu -10 302 1 30 59 0 0 chr1 162175547 162175598 -80488755 + AT_rich Low_complexity Low_complexity 1 51 0 254 325 36 0 chr1 162176461 162176544 -80487809 - MIR SINE MIR -111 151 66 370 259 0 2 chr1 162176551 162176640 -80487713 - FRAM/FAM SINE Alu -92 74 2 370 233 14 0 chr1 162176658 162176731 -80487622 - tRNA-Glu-GAG tRNA tRNA 0 75 2 1830 184 6 14 chr1 162176774 162177132 -80487221 - L1MC/D LINE L1 -1963 5822 5468 * 2516 245 23 13 chr1 162177115 162177891 -80486462 - L1MC/D LINE L1 -981 5165 4382 2253 170 21 11 chr1 162177893 162178275 -80486078 - MSTB LTR MaLR 0 426 41 12347 56 14 0 chr1 162178275 162180636 -80483717 - L1PA5 LINE L1 0 6154 3775 7172 24 0 0 chr1 162180639 162181471 -80482882 - L1PA3 LINE L1 0 6155 5324 14641 62 1 1 chr1 162181485 162183403 -80480950 - L1PA5 LINE L1 -2356 3790 1873 386 93 0 0 chr1 162183403 162183457 -80480896 - MSTB LTR MaLR -372 54 1 2720 226 21 8 chr1 162183457 162184169 -80480184 - L1MC/D LINE L1 -1762 4384 3664 18998 158 14 5 chr1 162184171 162190229 -80474124 - L1PA14 LINE L1 -5 7594 1479 1462 128 9 9 chr1 162190230 162190449 -80473904 - L1PA14 LINE L1 -7353 228 10 1044 250 15 0 chr1 162190449 162190721 -80473632 - L1MC/D LINE L1 -2470 3676 3401 623 233 80 64 chr1 162193176 162193425 -80470928 - MER112 DNA MER1_type 0 256 4 5886 187 41 34 chr1 162193614 162195056 -80469297 - Charlie1a DNA MER1_type -3 1452 1 191 229 0 0 chr1 162195739 162195774 -80468579 - MIR SINE MIR -10 252 218 1935 175 89 3 chr1 162196567 162196938 -80467415 + MLT2D LTR ERVL 1 403 -11 2099 153 7 58 chr1 162197259 162197670 -80466683 + MLT1B LTR MaLR 1 390 0 34 24 0 0 chr1 162198107 162198148 -80466205 + AT_rich Low_complexity Low_complexity 1 41 0 470 294 15 117 chr1 162198251 162198516 -80465837 - MIR SINE MIR -5 257 20 216 0 0 0 chr1 162198578 162198602 -80465751 + (T)n Simple_repeat Simple_repeat 1 24 0 582 258 10 57 chr1 162201162 162201356 -80462997 - MIR3 SINE MIR -9 199 15 470 197 26 26 chr1 162201607 162201724 -80462629 + L1ME3A LINE L1 6004 6120 -50 189 0 0 0 chr1 162201781 162201802 -80462551 + (A)n Simple_repeat Simple_repeat 1 21 0 1831 154 7 3 chr1 162201812 162202104 -80462249 + AluSg SINE Alu 1 293 -17 1226 14 0 14 chr1 162202573 162202721 -80461632 + L1PA5 LINE L1 6009 6154 0 191 128 51 0 chr1 162202732 162202771 -80461582 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 253 222 0 0 chr1 162204224 162204287 -80460066 + A-rich Low_complexity Low_complexity 1 63 0 291 54 0 0 chr1 162205004 162205041 -80459312 + (CA)n Simple_repeat Simple_repeat 2 38 0 540 218 56 6 chr1 162206736 162206954 -80457399 + MER46C DNA MER2_type 71 338 0 295 314 100 18 chr1 162207001 162207230 -80457123 + HAL1 LINE L1 2245 2492 -15 24 0 0 0 chr1 162207240 162207264 -80457089 + AT_rich Low_complexity Low_complexity 1 24 0 1744 156 0 75 chr1 162207336 162207669 -80456684 + AluJo SINE Alu 3 310 -2 433 322 25 0 chr1 162209541 162209662 -80454691 + MIR3 SINE MIR 31 154 -54 597 263 67 128 chr1 162209853 162210229 -80454124 + L2 LINE L2 2940 3292 -21 207 256 26 64 chr1 162210605 162210683 -80453670 - MER5A DNA MER1_type -6 183 109 1808 129 48 3 chr1 162211206 162211516 -80452837 - L1MA6 LINE L1 0 6300 5977 225 94 0 0 chr1 162211520 162211552 -80452801 + (T)n Simple_repeat Simple_repeat 1 32 0 334 300 78 38 chr1 162211793 162212100 -80452253 + L2 LINE L2 2296 2683 -631 346 244 193 25 chr1 162213221 162213340 -80451013 - MIR3 SINE MIR -48 160 22 2334 87 13 0 chr1 162213398 162213698 -80450655 - AluSc SINE Alu -5 304 1 537 178 20 0 chr1 162213933 162214034 -80450319 + AluJb SINE Alu 199 301 -11 25 65 0 0 chr1 162214103 162214149 -80450204 + AT_rich Low_complexity Low_complexity 1 46 0 401 322 90 0 chr1 162214233 162214444 -80449909 - L1MC/D LINE L1 -1985 5823 5594 559 249 230 9 chr1 162214766 162214979 -80449374 + MIR SINE MIR 3 262 0 239 232 155 56 chr1 162214996 162215138 -80449215 - L1MC/D LINE L1 -2039 5769 5614 4846 104 36 19 chr1 162215173 162215535 -80448818 - L1PB3 LINE L1 0 6154 5800 306 0 0 0 chr1 162215535 162215569 -80448784 + (TA)n Simple_repeat Simple_repeat 2 35 0 4846 104 36 19 chr1 162215569 162216003 -80448350 - L1PB3 LINE L1 -354 5800 5344 229 281 139 31 chr1 162216045 162216333 -80448020 - L1MC/D LINE L1 -2235 5573 5255 362 309 102 68 chr1 162216568 162217085 -80447268 - L1MC/D LINE L1 -1205 4941 4407 25 0 0 0 chr1 162217155 162217180 -80447173 + AT_rich Low_complexity Low_complexity 1 25 0 197 132 26 0 chr1 162218000 162218038 -80446315 + (CA)n Simple_repeat Simple_repeat 2 40 0 667 258 163 91 chr1 162218938 162219387 -80444966 + L2 LINE L2 1812 2292 -1022 526 43 0 0 chr1 162219388 162219457 -80444896 - L1PA4 LINE L1 -5402 744 676 * 6121 64 22 0 chr1 162219454 162220297 -80444056 + L1PA4 LINE L1 716 1577 -4569 * 24875 35 14 0 chr1 162220295 162224265 -80440088 + L1PA4 LINE L1 2130 6152 -3 240 221 116 32 chr1 162224449 162224544 -80439809 + L2 LINE L2 2621 2723 -591 237 200 47 12 chr1 162224851 162224936 -80439417 + GA-rich Low_complexity Low_complexity 3 90 0 348 264 79 29 chr1 162225546 162225686 -80438667 - MIR SINE MIR -96 166 20 213 243 225 9 chr1 162227699 162227810 -80436543 - MIR SINE MIR -77 185 51 297 131 0 0 chr1 162233029 162233090 -80431263 + (TG)n Simple_repeat Simple_repeat 2 62 0 230 284 0 0 chr1 162235722 162235789 -80428564 + (TG)n Simple_repeat Simple_repeat 2 68 0 1944 110 8 0 chr1 162239029 162239284 -80425069 - AluSc SINE Alu -52 257 1 23 33 0 0 chr1 162239546 162239576 -80424777 + AT_rich Low_complexity Low_complexity 1 30 0 423 85 0 0 chr1 162242346 162242405 -80421948 - Charlie1 DNA MER1_type -26 2735 2677 548 213 39 0 chr1 162242443 162242570 -80421783 - MER63 DNA MER1_type -302 760 3 9163 182 82 50 chr1 162242575 162245155 -80419198 - Charlie1 DNA MER1_type -98 2663 1 222 270 40 0 chr1 162245966 162246040 -80418313 - MER5C DNA MER1_type 0 324 248 362 222 0 12 chr1 162246179 162246260 -80418093 - MER5C DNA MER1_type -200 124 45 318 253 34 185 chr1 162247155 162247420 -80416933 + L3 LINE CR1 1261 1485 -92 343 190 129 35 chr1 162247420 162247536 -80416817 + MER94 DNA DNA 1 127 -7 259 254 28 28 chr1 162247541 162247612 -80416741 + L3 LINE CR1 1475 1545 -32 198 0 0 0 chr1 162247831 162247853 -80416500 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr1 162249021 162249042 -80415311 + AT_rich Low_complexity Low_complexity 1 21 0 324 70 0 0 chr1 162249437 162249480 -80414873 + (TG)n Simple_repeat Simple_repeat 2 44 0 519 279 70 88 chr1 162250351 162250659 -80413694 - HAL1 LINE L1 -1835 672 360 1588 190 14 14 chr1 162250659 162250948 -80413405 - AluJo SINE Alu -23 289 1 519 279 70 88 chr1 162250948 162251323 -80413030 - HAL1 LINE L1 -2147 360 1 221 314 67 0 chr1 162251602 162251707 -80412646 - L2 LINE L2 -189 3083 2972 4142 17 0 0 chr1 162252071 162252544 -80411809 - L1PA2 LINE L1 -1 6154 5682 3520 19 0 0 chr1 162252545 162253099 -80411254 + L1PA2 LINE L1 5127 5680 -475 1964 158 124 16 chr1 162254057 162254443 -80409910 - MSTA LTR MaLR 0 428 1 2246 92 11 0 chr1 162255855 162256189 -80408164 - AluSq SINE Alu 0 337 1 192 197 45 76 chr1 162256627 162256693 -80407660 - L2 LINE L2 -87 3226 3163 22 0 0 0 chr1 162258134 162258156 -80406197 + AT_rich Low_complexity Low_complexity 1 22 0 1192 194 62 3 chr1 162259051 162259355 -80404998 - MER33 DNA MER1_type -1 323 2 1393 199 71 14 chr1 162260693 162260975 -80403378 - AluJo SINE Alu -14 298 1 321 350 32 8 chr1 162261274 162261397 -80402956 - MIR3 SINE MIR -69 139 14 1182 292 98 31 chr1 162262491 162263766 -80400587 - L1MEd LINE L1 -2002 4127 2768 389 259 24 0 chr1 162263930 162264015 -80400338 - L2 LINE L2 -7 3306 3220 312 275 112 28 chr1 162264144 162264322 -80400031 - L1MEd LINE L1 -3646 2483 2291 4607 133 31 6 chr1 162264323 162264627 -80399726 - L1MA4A LINE L1 -5 6298 6003 438 75 0 0 chr1 162264627 162264694 -80399659 + (CA)n Simple_repeat Simple_repeat 2 68 0 4607 133 31 6 chr1 162264694 162265174 -80399179 - L1MA4A LINE L1 -300 6003 5495 9730 187 61 93 chr1 162265175 162267715 -80396638 - L1 LINE L1 -2655 4193 1694 733 224 54 0 chr1 162267715 162267862 -80396491 - FRAM SINE Alu -23 153 1 9730 187 61 93 chr1 162267862 162269504 -80394849 - L1 LINE L1 -5154 1694 1 293 322 26 0 chr1 162269515 162269630 -80394723 - L1MEd LINE L1 -5685 434 317 2697 87 28 3 chr1 162270199 162270554 -80393799 - THE1B LTR MaLR 0 364 1 414 353 13 6 chr1 162271480 162271636 -80392717 - MIR3 SINE MIR -34 174 18 401 208 57 28 chr1 162273908 162274014 -80390339 + L2 LINE L2 3183 3291 -22 2440 86 0 0 chr1 162274458 162274761 -80389592 - AluY SINE Alu -8 303 1 201 132 0 0 chr1 162275946 162275984 -80388369 + (CA)n Simple_repeat Simple_repeat 1 38 0 786 264 0 0 chr1 162276333 162276507 -80387846 + MER45A DNA AcHobo 2 175 -3 454 296 68 6 chr1 162276837 162276999 -80387354 - MIR SINE MIR -23 239 68 19629 158 34 10 chr1 162277000 162280004 -80384349 + L1MA2 LINE L1 75 3004 -4719 1572 71 5 10 chr1 162280004 162280202 -80384151 - AluY SINE Alu -20 291 95 19629 158 34 10 chr1 162280202 162284364 -80379989 + L1MA2 LINE L1 3004 7418 -305 184 349 0 0 chr1 162285126 162285169 -80379184 + L2 LINE L2 3138 3180 -92 441 54 0 0 chr1 162286199 162286255 -80378098 + (TG)n Simple_repeat Simple_repeat 2 57 0 718 278 43 13 chr1 162286393 162286627 -80377726 - LTR16C LTR ERVL 0 491 251 503 230 71 8 chr1 162287866 162287992 -80376361 - MIR SINE MIR -70 192 59 2198 223 142 5 chr1 162287993 162288009 -80376344 - MER76 LTR ERV 0 688 676 279 0 0 0 chr1 162288009 162288040 -80376313 + (GA)n Simple_repeat Simple_repeat 1 31 0 2198 223 142 5 chr1 162288040 162288628 -80375725 - MER76 LTR ERV -12 676 1 273 29 0 0 chr1 162289751 162289786 -80374567 - MADE1 DNA Mariner 0 80 46 242 324 28 19 chr1 162290843 162290951 -80373402 - MIR3 SINE MIR -13 195 87 250 332 51 43 chr1 162291869 162292104 -80372249 + L2 LINE L2 782 1018 -2296 200 398 0 9 chr1 162292225 162292338 -80372015 + L2 LINE L2 2260 2371 -943 247 339 18 77 chr1 162292853 162293021 -80371332 + L2 LINE L2 3155 3312 -1 218 306 183 31 chr1 162294274 162294503 -80369850 + L2 LINE L2 1715 1978 -1336 609 379 100 2 chr1 162294794 162295293 -80369060 + L2 LINE L2 1969 2516 -798 439 329 5 59 chr1 162295316 162295466 -80368887 - L2 LINE L2 0 3313 3177 2054 172 26 10 chr1 162295466 162295849 -80368504 + MLT1B LTR MaLR 2 390 0 439 329 5 59 chr1 162295849 162295920 -80368433 - L2 LINE L2 -136 3177 3104 * 836 293 206 42 chr1 162295898 162296096 -80368257 - L2 LINE L2 -341 2973 2809 997 214 4 48 chr1 162296096 162296325 -80368028 - MER20 DNA MER1_type 0 219 1 836 293 206 42 chr1 162296325 162296776 -80367577 - L2 LINE L2 -505 2809 2196 353 121 0 0 chr1 162296776 162296834 -80367519 + L1MA2 LINE L1 6247 6304 0 836 293 206 42 chr1 162296834 162296893 -80367460 - L2 LINE L2 -1118 2196 2148 1139 236 114 103 chr1 162298342 162298956 -80365397 + MLT1E2 LTR MaLR 4 626 0 1540 216 11 3 chr1 162299212 162299526 -80364827 + AluJb SINE Alu 1 316 0 1274 242 28 3 chr1 162299661 162299983 -80364370 + MLT1I LTR MaLR 80 409 0 228 260 98 32 chr1 162300194 162300317 -80364036 - MLT1J2 LTR MaLR -41 409 279 308 296 35 0 chr1 162300418 162300533 -80363820 - MLT1J1 LTR MaLR -311 135 17 834 272 35 0 chr1 162301042 162301270 -80363083 + MLT1I LTR MaLR 149 384 -25 23 0 0 0 chr1 162301464 162301487 -80362866 + AT_rich Low_complexity Low_complexity 1 23 0 187 374 61 0 chr1 162302911 162303010 -80361343 - L2 LINE L2 -47 3225 3121 21 36 0 0 chr1 162304947 162304975 -80359378 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr1 162305377 162305406 -80358947 + (CA)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr1 162305495 162305518 -80358835 + (TG)n Simple_repeat Simple_repeat 2 24 0 458 279 144 22 chr1 162305592 162305814 -80358539 + L2 LINE L2 2444 2692 -622 259 371 21 56 chr1 162306115 162306258 -80358095 + L2 LINE L2 3117 3254 -18 1705 177 36 51 chr1 162306767 162307157 -80357196 - MLT1B LTR MaLR 0 390 7 254 88 0 0 chr1 162307848 162307882 -80356471 + (A)n Simple_repeat Simple_repeat 1 34 0 186 352 49 14 chr1 162308137 162308279 -80356074 + L2 LINE L2 3163 3309 -4 299 310 203 10 chr1 162308593 162308790 -80355563 - MIR SINE MIR -6 256 22 1784 168 34 23 chr1 162309216 162309669 -80354684 + L1MC/D LINE L1 5189 5644 -700 274 357 25 13 chr1 162311099 162311256 -80353097 + MER5B DNA MER1_type 3 161 -17 527 81 0 0 chr1 162311617 162311691 -80352662 - L1PA8 LINE L1 0 6172 6099 223 355 19 19 chr1 162312603 162312710 -80351643 + L2 LINE L2 2985 3091 -181 238 273 0 0 chr1 162312850 162312905 -80351448 + GA-rich Low_complexity Low_complexity 1 55 0 2290 78 7 17 chr1 162313551 162313847 -80350506 - AluY SINE Alu -18 293 1 280 305 31 31 chr1 162313872 162314024 -80350329 + MIR SINE MIR 30 180 -73 1891 179 27 67 chr1 162315254 162315779 -80348574 + Charlie4a DNA MER1_type 3 506 -2 1800 103 19 0 chr1 162315786 162316048 -80348305 + L1PA13 LINE L1 5893 6159 -4 257 301 60 0 chr1 162318148 162318231 -80346122 + LTR67 LTR ERVL 455 542 -15 24 0 0 0 chr1 162318273 162318297 -80346056 + AT_rich Low_complexity Low_complexity 1 24 0 1756 137 38 4 chr1 162318478 162318835 -80345518 + AluJb SINE Alu 22 387 0 320 327 0 0 chr1 162319166 162319273 -80345080 + MER117 DNA MER1_type 9 115 -82 1789 204 50 28 chr1 162320271 162320669 -80343684 - MER90 LTR ERV1 -155 459 53 1560 174 7 3 chr1 162321787 162322081 -80342272 - L1MA7 LINE L1 -22 6269 5975 282 310 20 10 chr1 162322084 162322184 -80342169 - MIR SINE MIR -118 144 44 28 61 0 0 chr1 162322566 162322615 -80341738 + AT_rich Low_complexity Low_complexity 1 49 0 721 269 30 20 chr1 162322954 162323155 -80341198 + Charlie8 DNA MER1_type 2 204 -2213 227 241 69 0 chr1 162323516 162323574 -80340779 + L2 LINE L2 3248 3309 -4 255 261 33 11 chr1 162323685 162323777 -80340576 + (TTCA)n Simple_repeat Simple_repeat 1 94 0 306 326 54 49 chr1 162323858 162324042 -80340311 + L1ME LINE L1 306 490 -5882 1473 248 96 46 chr1 162324544 162325367 -80338986 + L1ME LINE L1 630 1456 -4926 * 10470 213 40 16 chr1 162325336 162325584 -80338769 + L1ME LINE L1 2041 2282 -4100 240 35 0 0 chr1 162325584 162325613 -80338740 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 10470 213 40 16 chr1 162325613 162325722 -80338631 + L1ME LINE L1 2282 2387 -3995 1967 141 3 3 chr1 162325722 162326029 -80338324 - AluSx SINE Alu 0 307 1 10470 213 40 16 chr1 162326029 162327185 -80337168 + L1ME LINE L1 2387 3514 -2868 249 108 0 0 chr1 162327185 162327222 -80337131 + (TA)n Simple_repeat Simple_repeat 2 38 0 10470 213 40 16 chr1 162327222 162328391 -80335962 + L1ME LINE L1 3514 4818 -1564 291 130 43 0 chr1 162328391 162328437 -80335916 + Tigger1 DNA MER2_type 2144 2191 -227 482 253 7 7 chr1 162328449 162328627 -80335726 + L1MEc LINE L1 2147 2284 -3931 2062 145 7 0 chr1 162328657 162328967 -80335386 + AluSx SINE Alu 1 312 0 479 193 50 0 chr1 162328967 162329086 -80335267 + L1MEc LINE L1 2931 3055 -3160 * 922 245 109 17 chr1 162329085 162329444 -80334909 + L1ME LINE L1 2464 2855 -3527 5564 242 58 40 chr1 162330387 162330512 -80333841 + L1ME LINE L1 2833 2954 -3428 1058 250 19 0 chr1 162330512 162330728 -80333625 + MER58A DNA MER1_type 1 220 -4 5564 242 58 40 chr1 162330728 162330951 -80333402 + L1ME LINE L1 2954 3172 -3210 1876 135 10 14 chr1 162330951 162331240 -80333113 + AluSx SINE Alu 1 288 -24 5564 242 58 40 chr1 162331240 162333005 -80331348 + L1ME LINE L1 3172 4985 -1397 845 189 66 106 chr1 162333007 162333083 -80331270 + MER20 DNA MER1_type 2 79 -140 2386 138 69 9 chr1 162333083 162333503 -80330850 - L1MA4 LINE L1 -6 6294 5850 845 189 66 106 chr1 162333503 162333653 -80330700 + MER20 DNA MER1_type 79 219 0 257 170 0 0 chr1 162333655 162333702 -80330651 + L1ME LINE L1 4981 5027 -1355 483 119 18 37 chr1 162333711 162333820 -80330533 + GA-rich Low_complexity Low_complexity 3 109 0 785 242 112 23 chr1 162333820 162334080 -80330273 + L1ME LINE L1 5038 5320 -1062 402 190 0 0 chr1 162334091 162334170 -80330183 - L1P5 LINE L1 -367 5789 5711 * 6210 241 35 25 chr1 162334169 162334395 -80329958 - L1PBb LINE L1 -2424 4424 4202 1767 60 0 47 chr1 162334395 162334630 -80329723 - AluY SINE Alu -2 309 86 6210 241 35 25 chr1 162334630 162334800 -80329553 - L1PBb LINE L1 -2646 4202 4035 1943 141 0 29 chr1 162334800 162335106 -80329247 - AluSq SINE Alu -16 297 1 6210 241 35 25 chr1 162335106 162337271 -80327082 - L1PBb LINE L1 -2813 4035 1786 2768 108 6 3 chr1 162337271 162337632 -80326721 + THE1B LTR MaLR 1 362 -2 6210 241 35 25 chr1 162337632 162338089 -80326264 - L1PBb LINE L1 -5062 1786 1335 396 265 10 10 chr1 162338066 162338168 -80326185 - L1PBb LINE L1 -5276 1572 1471 * 361 349 28 28 chr1 162338168 162338492 -80325861 - L1PBb LINE L1 -5286 1562 1239 442 376 82 43 chr1 162338865 162339144 -80325209 - L1PBb LINE L1 -5893 956 667 908 304 104 31 chr1 162339198 162339649 -80324704 - L1PBb LINE L1 -6356 493 10 232 340 21 0 chr1 162339865 162339962 -80324391 - MIR3 SINE MIR -11 197 99 190 282 154 43 chr1 162341764 162341881 -80322472 + L2 LINE L2 3141 3270 -2 257 108 0 0 chr1 162341937 162341974 -80322379 + MER21B LTR ERV1 207 243 -620 606 285 63 54 chr1 162342560 162343057 -80321296 - MLT1K LTR MaLR -8 580 24 2237 115 0 10 chr1 162343125 162343429 -80320924 + AluSx SINE Alu 1 301 -11 359 295 36 0 chr1 162343812 162343924 -80320429 + MIR3 SINE MIR 52 167 -41 258 81 0 0 chr1 162344550 162344587 -80319766 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 357 82 0 0 chr1 162345069 162345118 -80319235 + (CA)n Simple_repeat Simple_repeat 1 49 0 237 317 123 87 chr1 162346347 162346681 -80317672 - L2 LINE L2 -8 3264 2919 22 56 0 0 chr1 162347057 162347093 -80317260 + AT_rich Low_complexity Low_complexity 1 36 0 458 277 26 58 chr1 162347310 162347465 -80316888 + MIR SINE MIR 103 252 -10 290 331 105 0 chr1 162347756 162347880 -80316473 + MIR3 SINE MIR 32 168 -40 1456 249 38 16 chr1 162347923 162348289 -80316064 + MLT1A2 LTR MaLR 1 374 0 2043 120 23 3 chr1 162348834 162349134 -80315219 - AluSx SINE Alu -2 310 5 311 344 0 0 chr1 162349179 162349269 -80315084 + MIR SINE MIR 48 137 -125 188 210 32 81 chr1 162349268 162349330 -80315023 - L2 LINE L2 0 3313 3255 * 508 329 95 41 chr1 162349873 162350001 -80314352 - L2 LINE L2 -9 3304 3184 180 111 0 0 chr1 162350001 162350028 -80314325 + (TG)n Simple_repeat Simple_repeat 2 28 0 508 329 95 41 chr1 162350028 162350476 -80313877 - L2 LINE L2 -129 3184 2703 314 191 91 82 chr1 162351091 162351201 -80313152 + LTR33A LTR ERVL 413 523 0 2107 168 11 8 chr1 162351581 162351938 -80312415 + MER46B DNA MER2_type 1 233 -3 393 238 19 38 chr1 162352118 162352223 -80312130 - MIR SINE MIR 0 262 160 488 351 5 0 chr1 162352600 162352805 -80311548 + HAL1 LINE L1 1427 1632 -875 25 31 0 0 chr1 162353314 162353346 -80311007 + AT_rich Low_complexity Low_complexity 1 32 0 377 286 104 19 chr1 162353585 162353739 -80310614 + LTR33 LTR ERVL 49 215 -306 335 219 88 26 chr1 162353818 162353932 -80310421 + LTR33 LTR ERVL 401 521 0 347 303 77 61 chr1 162354030 162354312 -80310041 + L1M4 LINE L1 4064 4357 -1789 1345 271 87 48 chr1 162354312 162354832 -80309521 - MLT1F LTR MaLR -2 540 1 347 303 77 61 chr1 162354832 162354992 -80309361 + L1M4 LINE L1 4357 4513 -1633 242 164 0 16 chr1 162355064 162355125 -80309228 + (TA)n Simple_repeat Simple_repeat 2 61 0 549 276 115 32 chr1 162355159 162355471 -80308882 + L1M4 LINE L1 4685 5022 -1124 454 280 34 43 chr1 162355484 162355842 -80308511 + L1M4 LINE L1 5255 5609 -555 968 252 12 28 chr1 162357180 162357434 -80306919 - MIR SINE MIR -9 253 4 2330 96 0 0 chr1 162357522 162357815 -80306538 + AluSc SINE Alu 1 293 -16 270 339 95 25 chr1 162358031 162358314 -80306039 - L2 LINE L2 -444 2870 2568 229 276 20 31 chr1 162358690 162358788 -80305565 - L2 LINE L2 -1048 2266 2170 216 0 0 0 chr1 162358810 162358834 -80305519 + (A)n Simple_repeat Simple_repeat 1 24 0 755 189 24 12 chr1 162358837 162359006 -80305347 + MER53 DNA DNA 18 188 -1 259 275 44 83 chr1 162359010 162359239 -80305114 - MER102a DNA MER1_type 0 330 111 33 0 0 0 chr1 162359239 162359272 -80305081 + AT_rich Low_complexity Low_complexity 1 33 0 1738 170 0 21 chr1 162359296 162359584 -80304769 + AluJo SINE Alu 1 282 -30 195 42 0 0 chr1 162359588 162359612 -80304741 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 198 118 0 0 chr1 162360297 162360331 -80304022 + (GA)n Simple_repeat Simple_repeat 2 35 0 354 195 0 0 chr1 162360617 162360694 -80303659 + (CCA)n Simple_repeat Simple_repeat 2 78 0 206 342 150 8 chr1 162361200 162361320 -80303033 - MIR3 SINE MIR -69 139 3 401 303 48 12 chr1 162362212 162362377 -80301976 - MIR3 SINE MIR -7 201 31 1186 281 71 44 chr1 162362979 162363642 -80300711 + L1ME4a LINE L1 5394 6074 -47 188 264 81 58 chr1 162363733 162363820 -80300533 - L2 LINE L2 -96 3217 3129 196 232 36 0 chr1 162363925 162363981 -80300372 - L2 LINE L2 -335 2978 2921 183 355 73 51 chr1 162364655 162364928 -80299425 - L2 LINE L2 -168 3104 2826 387 289 62 16 chr1 162365151 162365345 -80299008 + MIR SINE MIR 10 212 -50 299 227 191 36 chr1 162366271 162366381 -80297972 - L2 LINE L2 -10 3262 3136 251 389 0 0 chr1 162366481 162366553 -80297800 + L3 LINE CR1 1502 1573 -4 348 24 0 0 chr1 162367901 162367942 -80296411 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr1 162368083 162368104 -80296249 + AT_rich Low_complexity Low_complexity 1 21 0 334 333 19 9 chr1 162368446 162368554 -80295799 + MIR SINE MIR 6 114 -148 828 380 54 16 chr1 162368669 162369185 -80295168 + L2 LINE L2 705 1240 -2074 980 169 22 62 chr1 162369415 162369640 -80294713 - MER20 DNA MER1_type -2 217 2 2191 87 0 24 chr1 162370099 162370397 -80293956 + AluY SINE Alu 2 292 -19 278 334 30 15 chr1 162370565 162370668 -80293685 + MIR SINE MIR 3 102 -106 283 343 0 58 chr1 162371003 162371140 -80293213 + L2 LINE L2 3134 3262 -10 205 175 0 0 chr1 162373307 162373347 -80291006 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 1247 265 221 13 chr1 162373347 162374068 -80290285 - L2 LINE L2 0 3313 2433 547 301 43 47 chr1 162374264 162374520 -80289833 - L3 LINE CR1 -6 1571 1317 247 260 68 14 chr1 162374569 162374642 -80289711 - MIR SINE MIR -66 196 120 28 48 0 0 chr1 162374870 162374912 -80289441 + AT_rich Low_complexity Low_complexity 1 42 0 195 42 0 0 chr1 162374982 162375006 -80289347 + (TC)n Simple_repeat Simple_repeat 1 24 0 435 265 5 70 chr1 162375078 162375261 -80289092 + MIR SINE MIR 20 190 -56 2176 111 3 0 chr1 162375682 162375971 -80288382 - AluSq SINE Alu -23 290 1 354 289 132 62 chr1 162377223 162377355 -80286998 - MIR SINE MIR 0 262 141 2362 84 7 0 chr1 162377355 162377663 -80286690 + AluSp SINE Alu 1 310 -3 354 289 132 62 chr1 162377663 162377772 -80286581 - MIR SINE MIR -121 141 4 3995 78 25 16 chr1 162377772 162378320 -80286033 + MER41A LTR ERV1 1 553 -1 644 270 149 73 chr1 162378434 162378789 -80285564 - L2 LINE L2 -1 3312 2931 393 265 81 7 chr1 162378810 162378946 -80285407 - MER20B DNA MER1_type -609 174 29 356 301 80 89 chr1 162378992 162379294 -80285059 - L2 LINE L2 -378 2936 2638 279 239 118 76 chr1 162379559 162379691 -80284662 - L1ME LINE L1 -374 5747 5598 2026 125 7 0 chr1 162379691 162379978 -80284375 - AluSx SINE Alu -21 291 3 279 239 118 76 chr1 162379978 162380075 -80284278 - L1ME LINE L1 -523 5598 5506 3080 184 86 20 chr1 162380293 162380957 -80283396 - MER50 LTR ERV1 -23 711 4 24 0 0 0 chr1 162381200 162381224 -80283129 + AT_rich Low_complexity Low_complexity 1 24 0 36 23 0 0 chr1 162381407 162381450 -80282903 + AT_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr1 162381474 162381502 -80282851 + AT_rich Low_complexity Low_complexity 1 28 0 434 269 54 86 chr1 162381516 162381887 -80282466 - L1ME LINE L1 -1446 4700 4342 242 287 194 16 chr1 162382661 162382790 -80281563 - MIR SINE MIR -79 183 32 184 338 173 23 chr1 162383955 162384088 -80280265 + MIR3 SINE MIR 28 180 -28 357 295 57 0 chr1 162384351 162384456 -80279897 + L2 LINE L2 3160 3270 -2 22 0 0 0 chr1 162384895 162384917 -80279436 + AT_rich Low_complexity Low_complexity 1 22 0 5595 136 9 0 chr1 162384917 162386249 -80278104 - L1PA15 LINE L1 0 6165 4833 2287 125 0 0 chr1 162387018 162387322 -80277031 - AluSx SINE Alu -8 304 1 311 315 43 106 chr1 162387458 162387712 -80276641 - L2 LINE L2 -6 3266 3029 1942 183 0 3 chr1 162387948 162388259 -80276094 - AluJb SINE Alu -2 310 1 228 240 231 29 chr1 162388376 162388480 -80275873 + L2 LINE L2 3188 3312 -1 2888 93 20 40 chr1 162389359 162389409 -80274944 - MLT2A1 LTR ERVL -3 441 392 246 32 0 0 chr1 162389409 162389440 -80274913 + (TG)n Simple_repeat Simple_repeat 2 32 0 2888 93 20 40 chr1 162389440 162389839 -80274514 - MLT2A1 LTR ERVL -52 392 1 41999 66 6 2 chr1 162389839 162395346 -80269007 - HERVL-A1 LTR ERVL 0 5654 125 339 159 24 24 chr1 162395346 162395472 -80268881 + (TA)n Simple_repeat Simple_repeat 1 126 0 225 0 0 0 chr1 162395597 162395622 -80268731 + (CA)n Simple_repeat Simple_repeat 1 25 0 25 31 0 0 chr1 162398315 162398347 -80266006 + AT_rich Low_complexity Low_complexity 1 32 0 300 27 0 0 chr1 162399357 162399394 -80264959 + (CA)n Simple_repeat Simple_repeat 2 38 0 396 272 114 22 chr1 162400314 162400498 -80263855 - MIR SINE MIR -12 250 50 468 332 37 33 chr1 162400777 162400991 -80263362 + MIR SINE MIR 42 256 -6 251 398 0 0 chr1 162401170 162401253 -80263100 + MIR SINE MIR 20 102 -160 276 230 63 33 chr1 162401270 162401469 -80262884 - L1MEc LINE L1 -1015 1475 1221 510 267 27 22 chr1 162401759 162401944 -80262409 - L1ME3A LINE L1 -294 5884 5692 645 277 94 73 chr1 162401952 162402674 -80261679 - L1MEc LINE L1 -4943 1176 440 304 321 107 51 chr1 162403208 162403546 -80260807 + L2 LINE L2 2695 3053 -219 2054 68 0 11 chr1 162403560 162403823 -80260530 - AluY SINE Alu -2 309 50 314 289 193 0 chr1 162403938 162404052 -80260301 + L2 LINE L2 3137 3272 0 183 205 0 0 chr1 162404121 162404160 -80260193 + (TG)n Simple_repeat Simple_repeat 1 39 0 4945 162 91 6 chr1 162406965 162408729 -80255624 - L1PA15 LINE L1 0 6165 4231 1494 133 48 4 chr1 162408726 162408996 -80255357 + L1PA15 LINE L1 3968 4249 -1897 * 190 338 35 42 chr1 162409541 162409683 -80254670 + L2 LINE L2 2578 2718 -596 238 310 230 0 chr1 162409864 162409951 -80254402 + L2 LINE L2 3157 3263 -9 359 298 31 73 chr1 162411429 162411496 -80252857 - MER5A DNA MER1_type 0 189 121 2202 91 7 0 chr1 162411496 162411874 -80252479 + AluSq SINE Alu 1 380 0 359 298 31 73 chr1 162411874 162411995 -80252358 - MER5A DNA MER1_type -68 121 7 355 292 19 0 chr1 162412114 162412268 -80252085 + MER103 DNA DNA 8 164 -2 602 272 120 5 chr1 162412711 162412902 -80251451 - MIR SINE MIR -4 258 46 46 19 0 0 chr1 162413164 162413217 -80251136 + AT_rich Low_complexity Low_complexity 1 53 0 334 263 44 0 chr1 162413217 162413331 -80251022 + L1ME LINE L1 5583 5701 -420 371 297 23 31 chr1 162413385 162413513 -80250840 + MIR SINE MIR 20 146 -116 939 133 42 0 chr1 162413513 162413678 -80250675 - MER20 DNA MER1_type -6 213 42 2942 132 19 13 chr1 162413757 162414233 -80250120 - L1PA16 LINE L1 -10 6156 5678 24 32 0 0 chr1 162414823 162414854 -80249499 + AT_rich Low_complexity Low_complexity 1 31 0 1156 198 33 0 chr1 162415206 162415418 -80248935 - MER20 DNA MER1_type 0 219 1 364 234 13 0 chr1 162415439 162415516 -80248837 + Tigger5 DNA MER2_type 2 79 -2244 239 226 0 0 chr1 162415525 162415578 -80248775 + Tigger5 DNA MER2_type 2271 2323 0 450 327 175 0 chr1 162416625 162416842 -80247511 + L2 LINE L2 2063 2317 -997 1214 206 62 75 chr1 162416854 162417102 -80247251 + MLT1I LTR MaLR 25 268 -141 1845 167 7 3 chr1 162417102 162417401 -80246952 + AluSx SINE Alu 1 300 -12 1214 206 62 75 chr1 162417401 162417536 -80246817 + MLT1I LTR MaLR 268 403 -6 784 276 94 24 chr1 162417544 162417841 -80246512 + L2 LINE L2 2316 2633 -681 476 73 375 0 chr1 162419164 162419260 -80245093 - L1PA16 LINE L1 -9 6157 6026 22 70 0 0 chr1 162419365 162419408 -80244945 + AT_rich Low_complexity Low_complexity 1 43 0 501 341 16 8 chr1 162419413 162419662 -80244691 - L1ME LINE L1 -311 5810 5560 856 126 0 0 chr1 162420731 162420877 -80243476 + FLAM_C SINE Alu 1 146 0 2705 98 2 36 chr1 162420899 162421316 -80243037 - L1PA15 LINE L1 0 6165 5763 25 0 0 0 chr1 162423043 162423068 -80241285 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chr1 162424864 162424888 -80239465 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1388 57 0 0 chr1 162429128 162429304 -80235049 - L1PA7 LINE L1 -210 5944 5769 44368 37 2 1 chr1 162429315 162435464 -80228889 - L1PA3 LINE L1 0 6155 1 2004 59 16 0 chr1 162435464 162435717 -80228636 - L1PA7 LINE L1 -369 5785 5529 1550 48 0 0 chr1 162435717 162435943 -80228410 + L1PA7 LINE L1 5957 6183 0 347 288 104 0 chr1 162436009 162436134 -80228219 - MIR SINE MIR -71 191 54 242 273 0 0 chr1 162437015 162437070 -80227283 + GA-rich Low_complexity Low_complexity 2 56 0 763 175 78 0 chr1 162438098 162438252 -80226101 - AluJb SINE Alu -13 299 134 279 0 0 0 chr1 162438367 162438398 -80225955 + (CA)n Simple_repeat Simple_repeat 2 32 0 612 294 57 9 chr1 162438582 162438810 -80225543 - MIR SINE MIR -21 241 3 * 1042 271 118 37 chr1 162438810 162439419 -80224934 + L2 LINE L2 2665 3313 0 288 235 61 43 chr1 162441540 162441655 -80222698 - L1ME4a LINE L1 0 6121 6005 37782 81 13 9 chr1 162441679 162447797 -80216556 - L1PA6 LINE L1 -2 6152 11 780 266 52 38 chr1 162447910 162448186 -80216167 - L1ME4a LINE L1 -226 5895 5611 1944 164 0 0 chr1 162448186 162448491 -80215862 - AluJo SINE Alu -7 305 1 780 266 52 38 chr1 162448491 162448582 -80215771 - L1ME4a LINE L1 -510 5611 5523 244 309 170 14 chr1 162448591 162448814 -80215539 + L2 LINE L2 2153 2410 -904 202 173 0 96 chr1 162448917 162448969 -80215384 + L2 LINE L2 2595 2641 -673 1187 157 0 0 chr1 162449001 162449199 -80215154 - L1PA16 LINE L1 -1109 5037 4840 5909 135 6 4 chr1 162449203 162450297 -80214056 + L1PA16 LINE L1 5034 6129 -37 385 302 89 46 chr1 162450370 162450704 -80213649 + L2 LINE L2 2736 3084 -188 483 142 9 26 chr1 162450788 162450901 -80213452 + CT-rich Low_complexity Low_complexity 2 112 0 193 372 0 26 chr1 162450926 162451004 -80213349 + L2 LINE L2 3134 3209 -63 469 298 91 62 chr1 162451527 162451933 -80212420 + HAL1 LINE L1 981 1398 -1109 382 333 72 41 chr1 162452159 162452504 -80211849 + L1 LINE L1 3099 3454 -2692 2136 123 0 0 chr1 162452550 162452850 -80211503 - AluSx SINE Alu -12 300 1 867 327 17 33 chr1 162453067 162453486 -80210867 + L1M3a LINE L1 1 412 -5543 303 253 48 0 chr1 162453515 162453598 -80210755 + L2 LINE L2 3227 3313 0 1829 176 3 0 chr1 162454773 162455080 -80209273 - AluJb SINE Alu -4 308 1 494 299 51 0 chr1 162455111 162455248 -80209105 - MIR SINE MIR -70 192 49 180 323 43 32 chr1 162456400 162456493 -80207860 - L3 LINE CR1 -232 1345 1252 426 285 23 17 chr1 162456509 162456681 -80207672 - L1ME LINE L1 -395 5726 5554 350 79 270 0 chr1 162456993 162457056 -80207297 + MADE1 DNA Mariner 1 80 0 207 0 0 0 chr1 162457086 162457109 -80207244 + (TG)n Simple_repeat Simple_repeat 1 23 0 428 335 61 17 chr1 162457109 162457339 -80207014 - L3 LINE CR1 -348 1229 990 360 287 79 30 chr1 162457381 162457545 -80206808 + MIR SINE MIR 52 223 -39 555 322 46 15 chr1 162457614 162457875 -80206478 - L3 LINE CR1 -662 915 647 * 1771 306 96 57 chr1 162457873 162459030 -80205323 + L2 LINE L2 1117 2318 -996 739 276 170 26 chr1 162459108 162459611 -80204742 + L2 LINE L2 2720 3307 -6 23 0 0 0 chr1 162459724 162459747 -80204606 + AT_rich Low_complexity Low_complexity 1 23 0 308 277 27 18 chr1 162460491 162460603 -80203750 + MER103 DNA DNA 52 164 -2 623 321 219 16 chr1 162460891 162461606 -80202747 + L2 LINE L2 2337 3191 -81 766 199 33 7 chr1 162461724 162461875 -80202478 + FRAM SINE Alu 1 152 -24 255 61 0 0 chr1 162461879 162461912 -80202441 + (TG)n Simple_repeat Simple_repeat 2 34 0 33 0 0 0 chr1 162461912 162461945 -80202408 + AT_rich Low_complexity Low_complexity 1 33 0 27 62 0 0 chr1 162462149 162462197 -80202156 + AT_rich Low_complexity Low_complexity 1 48 0 187 200 0 20 chr1 162463034 162463084 -80201269 - L2 LINE L2 -1002 2312 2264 23 0 0 0 chr1 162463624 162463647 -80200706 + AT_rich Low_complexity Low_complexity 1 23 0 465 250 50 25 chr1 162465120 162465240 -80199113 - L2 LINE L2 0 3313 3191 2291 104 0 3 chr1 162465923 162466231 -80198122 - AluSc SINE Alu -2 307 1 486 301 83 37 chr1 162467176 162467392 -80196961 + MIR SINE MIR 3 228 -34 758 152 7 13 chr1 162467773 162467924 -80196429 - L1MA4 LINE L1 0 6300 6151 267 31 0 0 chr1 162468611 162468643 -80195710 + (CA)n Simple_repeat Simple_repeat 1 32 0 1386 282 148 19 chr1 162469243 162470208 -80194145 - L2 LINE L2 0 3313 2213 1512 92 60 0 chr1 162471171 162471388 -80192965 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chr1 162472021 162472042 -80192311 + AT_rich Low_complexity Low_complexity 1 21 0 230 320 0 26 chr1 162472597 162472675 -80191678 + L2 LINE L2 3236 3311 -2 189 0 0 0 chr1 162472736 162472757 -80191596 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 306 0 0 0 chr1 162472756 162472790 -80191563 + (GA)n Simple_repeat Simple_repeat 1 34 0 1373 179 36 16 chr1 162472867 162473165 -80191188 - MER61B LTR ERV1 -34 391 1 1332 304 81 29 chr1 162473265 162473946 -80190407 + L1MEd LINE L1 53 768 -5351 21 36 0 0 chr1 162473958 162473986 -80190367 + AT_rich Low_complexity Low_complexity 1 28 0 522 261 181 26 chr1 162474059 162474144 -80190209 + L1MEd LINE L1 922 992 -1498 924 186 73 44 chr1 162474144 162474348 -80190005 + MER63A DNA MER1_type 1 210 0 522 261 181 26 chr1 162474348 162474889 -80189464 + L1MEd LINE L1 992 1634 -856 4113 170 62 15 chr1 162475437 162476292 -80188061 + L1MC4a LINE L1 6697 7591 -217 556 226 40 12 chr1 162476295 162476457 -80187896 + L1MC4a LINE L1 7655 7808 0 333 0 0 0 chr1 162477773 162477810 -80186543 + (CA)n Simple_repeat Simple_repeat 2 38 0 232 286 98 27 chr1 162478965 162479077 -80185276 - L3b LINE CR1 -195 1388 1269 597 219 22 15 chr1 162480181 162480318 -80184035 + MER5B DNA MER1_type 37 174 -4 252 395 25 12 chr1 162480957 162481119 -80183234 - L2 LINE L2 -277 3036 2873 237 306 0 0 chr1 162481732 162481794 -80182559 - L2 LINE L2 0 3272 3211 242 351 114 41 chr1 162481808 162482394 -80181959 + L2 LINE L2 2157 2785 -529 223 274 45 89 chr1 162482668 162482847 -80181506 + L2 LINE L2 3125 3295 -18 1403 214 74 62 chr1 162483049 162483274 -80181079 + L1MC5 LINE L1 7323 7544 -417 2955 117 9 5 chr1 162483274 162483700 -80180653 + MSTA LTR MaLR 1 428 0 1403 214 74 62 chr1 162483700 162484072 -80180281 + L1MC5 LINE L1 7544 7927 -34 381 193 8 67 chr1 162484092 162484211 -80180142 + L1MC5 LINE L1 7638 7749 -212 1318 208 34 20 chr1 162484596 162484889 -80179464 + AluJo SINE Alu 2 298 -4 4795 184 35 9 chr1 162485166 162485187 -80179166 + L1M2 LINE L1 1837 1856 -4992 673 178 0 0 chr1 162485187 162485294 -80179059 + U6 snRNA snRNA 1 107 0 4795 184 35 9 chr1 162485294 162486437 -80177916 + L1M2 LINE L1 1856 3033 -3815 1548 145 8 12 chr1 162486438 162486680 -80177673 + THE1C LTR MaLR 1 241 -134 7853 173 19 13 chr1 162486682 162488285 -80176068 + L1M2 LINE L1 3249 4860 -1988 1025 159 66 59 chr1 162488285 162488415 -80175938 + MER33 DNA MER1_type 52 180 -2405 2057 148 69 3 chr1 162488415 162488779 -80175574 - MLT1B LTR MaLR 0 390 3 1025 159 66 59 chr1 162488779 162488919 -80175434 + MER33 DNA MER1_type 180 324 0 180 281 110 12 chr1 162489132 162489214 -80175139 + MIR SINE MIR 73 162 -100 * 840 208 42 21 chr1 162489202 162489394 -80174959 - MIR SINE MIR -1 261 66 180 315 171 44 chr1 162489663 162489844 -80174509 - L3 LINE CR1 -4 1573 1370 610 288 11 92 chr1 162490150 162490421 -80173932 - MIR SINE MIR -11 251 3 411 82 47 0 chr1 162490476 162490561 -80173792 + T-rich Low_complexity Low_complexity 4 92 0 2743 22 0 0 chr1 162490562 162490882 -80173471 - L1PA2 LINE L1 0 6155 5836 1902 177 0 0 chr1 162491322 162491627 -80172726 - AluJb SINE Alu -3 309 5 23 0 0 0 chr1 162492596 162492619 -80171734 + AT_rich Low_complexity Low_complexity 1 23 0 1242 163 92 21 chr1 162494412 162494651 -80169702 + AluJo SINE Alu 39 294 -18 249 263 0 0 chr1 162495938 162495995 -80168358 + MIR SINE MIR 196 252 -10 284 0 0 27 chr1 162496192 162496229 -80168124 + (TA)n Simple_repeat Simple_repeat 2 37 0 345 240 115 39 chr1 162498710 162498878 -80165475 + MIR3 SINE MIR 2 176 -66 244 327 36 64 chr1 162499165 162499275 -80165078 + MIR SINE MIR 25 131 -77 285 146 0 0 chr1 162499692 162499740 -80164613 + (CA)n Simple_repeat Simple_repeat 2 49 0 180 0 0 0 chr1 162499741 162499761 -80164592 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 214 227 23 11 chr1 162500109 162500197 -80164156 + (TA)n Simple_repeat Simple_repeat 1 89 0 549 258 44 13 chr1 162501062 162501240 -80163113 - MIR SINE MIR -62 146 13 572 244 47 47 chr1 162501755 162501968 -80162385 - L1ME3A LINE L1 -101 6069 5857 601 262 105 29 chr1 162503007 162503217 -80161136 - MIR SINE MIR -9 253 28 275 352 106 35 chr1 162503618 162504101 -80160252 + L2 LINE L2 2340 2856 -458 292 266 79 4 chr1 162504611 162504731 -80159622 + MIR SINE MIR 20 154 -67 559 209 16 89 chr1 162504791 162504982 -80159371 + MER104 DNA MER2_type 1 177 -3 2431 54 3 7 chr1 162506023 162506320 -80158033 + AluY SINE Alu 1 296 -15 2383 81 0 0 chr1 162506600 162506895 -80157458 + AluSx SINE Alu 2 296 -16 195 246 56 95 chr1 162508578 162508704 -80155649 + MIR SINE MIR 87 207 -55 743 240 138 9 chr1 162508853 162509070 -80155283 - MIR SINE MIR -3 259 15 911 172 116 10 chr1 162509076 162509274 -80155079 - MER20 DNA MER1_type 0 219 1 234 128 0 0 chr1 162510154 162510193 -80154160 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 162510688 162510709 -80153644 + AT_rich Low_complexity Low_complexity 1 21 0 2223 104 14 0 chr1 162513821 162514118 -80150235 - AluSx SINE Alu -11 301 1 208 344 0 0 chr1 162518754 162518815 -80145538 + CT-rich Low_complexity Low_complexity 2 62 0 318 223 25 8 chr1 162519028 162519149 -80145204 + GA-rich Low_complexity Low_complexity 2 124 0 273 257 119 30 chr1 162519658 162519759 -80144594 + L2 LINE L2 3179 3288 -25 661 156 227 0 chr1 162521585 162521739 -80142614 + MER5A DNA MER1_type 1 189 0 24 32 0 0 chr1 162522869 162522900 -80141453 + AT_rich Low_complexity Low_complexity 1 31 0 192 338 12 25 chr1 162523011 162523091 -80141262 - L2 LINE L2 -33 3239 3161 203 296 37 19 chr1 162523635 162523689 -80140664 - MIR SINE MIR -135 73 19 283 357 106 18 chr1 162523841 162524124 -80140229 - L2 LINE L2 -1 3312 3005 181 296 125 23 chr1 162524649 162524737 -80139616 - L2 LINE L2 0 3272 3176 228 219 0 0 chr1 162525085 162525126 -80139227 + FLAM_A SINE Alu 1 41 0 194 140 0 40 chr1 162529730 162529780 -80134573 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 192 200 0 0 chr1 162530689 162530739 -80133614 + (TG)n Simple_repeat Simple_repeat 1 50 0 2368 69 7 3 chr1 162531870 162532174 -80132179 - AluY SINE Alu -6 305 1 448 221 78 13 chr1 162533024 162533178 -80131175 + MER103 DNA DNA 2 165 -1 639 129 10 0 chr1 162533317 162533418 -80130935 + FLAM_A SINE Alu 34 135 -7 1508 185 3 67 chr1 162533434 162533748 -80130605 + AluJo SINE Alu 1 294 -18 2373 112 0 0 chr1 162534172 162534477 -80129876 - AluSx SINE Alu -7 305 1 198 71 0 0 chr1 162535715 162535743 -80128610 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 222 37 0 0 chr1 162536895 162536922 -80127431 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 508 163 12 0 chr1 162540096 162540182 -80124171 - Tigger5 DNA MER2_type 0 2323 2237 14465 137 38 6 chr1 162540225 162542581 -80121772 + L1M1 LINE L1 16 2447 -5118 2287 108 0 0 chr1 162543033 162543338 -80121015 - AluSx SINE Alu -7 305 1 8197 244 118 29 chr1 162544485 162547512 -80116841 + L2 LINE L2 3 3309 -4 450 245 137 17 chr1 162547721 162547871 -80116482 + MIR SINE MIR 25 211 -51 459 35 0 0 chr1 162547871 162547928 -80116425 + (CA)n Simple_repeat Simple_repeat 2 58 0 450 245 137 17 chr1 162547928 162547987 -80116366 + MIR SINE MIR 211 262 0 1771 171 10 7 chr1 162549090 162549388 -80114965 - AluJo SINE Alu -13 299 1 5318 126 40 1 chr1 162549388 162550261 -80114092 + Tigger1 DNA MER2_type 45 951 -1467 36354 81 10 6 chr1 162550269 162556407 -80107946 + L1PA6 LINE L1 11 6167 0 7545 125 103 7 chr1 162556440 162557788 -80106565 + Tigger1 DNA MER2_type 941 2418 0 182 290 65 19 chr1 162557979 162558086 -80106267 + L2 LINE L2 2863 2974 -298 472 180 203 0 chr1 162559045 162559173 -80105180 - MIR SINE MIR -21 241 88 360 0 0 0 chr1 162560000 162560040 -80104313 + (CA)n Simple_repeat Simple_repeat 2 41 0 546 274 128 27 chr1 162561645 162561864 -80102489 - MIR SINE MIR 0 262 22 419 292 9 9 chr1 162563046 162563159 -80101194 - L2 LINE L2 0 3313 3201 221 232 72 72 chr1 162563278 162563347 -80101006 - L3 LINE CR1 -1328 249 181 368 286 34 54 chr1 162563480 162563627 -80100726 + MIR SINE MIR 70 213 -49 261 198 66 22 chr1 162565108 162565199 -80099154 - Charlie8 DNA MER1_type -2205 212 118 283 254 30 15 chr1 162567254 162567321 -80097032 + L2 LINE L2 3246 3313 0 302 136 30 91 chr1 162569348 162569414 -80094939 + L1M4c LINE L1 217 278 -6106 2499 82 0 3 chr1 162570512 162570818 -80093535 - AluSg SINE Alu -5 305 1 364 323 0 0 chr1 162570907 162571006 -80093347 + MIR3 SINE MIR 85 183 -25 259 164 15 15 chr1 162571156 162571223 -80093130 + GA-rich Low_complexity Low_complexity 2 68 0 216 383 43 0 chr1 162571940 162572055 -80092298 - MIR SINE MIR -69 139 20 389 372 21 71 chr1 162572226 162572465 -80091888 - L2 LINE L2 0 3272 3046 241 314 73 16 chr1 162572822 162572946 -80091407 + L2 LINE L2 2954 3084 -188 202 313 60 0 chr1 162573491 162573558 -80090795 + L2 LINE L2 3147 3217 -55 235 269 108 32 chr1 162573617 162573710 -80090643 + L2 LINE L2 3214 3313 0 338 338 44 31 chr1 162574653 162574813 -80089540 - MER91A DNA MER1_type -13 183 22 6244 191 33 12 chr1 162576690 162578852 -80085501 + L1MB7 LINE L1 3949 6158 -26 232 277 109 40 chr1 162579251 162579352 -80085001 - L2 LINE L2 -9 3304 3197 392 293 71 75 chr1 162580330 162580583 -80083770 - L2 LINE L2 -43 3229 2978 1946 142 0 13 chr1 162581389 162581400 -80082953 - AluSx SINE Alu -9 303 293 195 69 0 0 chr1 162581400 162581429 -80082924 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 1946 142 0 13 chr1 162581429 162581720 -80082633 - AluSx SINE Alu -19 293 5 2197 115 3 3 chr1 162583549 162583861 -80080492 + AluSq SINE Alu 1 312 -1 435 52 0 0 chr1 162585216 162585274 -80079079 + (CA)n Simple_repeat Simple_repeat 1 58 0 218 237 72 72 chr1 162586182 162586279 -80078074 + MIR3 SINE MIR 1 97 -111 429 169 0 0 chr1 162587662 162587721 -80076632 + AluS SINE Alu 2 60 -258 2041 138 0 13 chr1 162587955 162588286 -80076067 + AluSx SINE Alu 1 312 0 844 175 0 7 chr1 162588294 162588437 -80075916 + FLAM_C SINE Alu 2 143 0 252 260 0 0 chr1 162589120 162589170 -80075183 + Charlie1 DNA MER1_type 18 67 -2694 201 167 0 0 chr1 162589243 162589279 -80075074 + A-rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 162589635 162589656 -80074697 + AT_rich Low_complexity Low_complexity 1 21 0 277 203 68 14 chr1 162589699 162589773 -80074580 - Charlie1 DNA MER1_type 0 2761 2684 784 205 5 126 chr1 162589805 162590020 -80074333 - Charlie1 DNA MER1_type -2555 206 18 232 235 62 25 chr1 162592549 162592630 -80071723 + L1MC4a LINE L1 6086 6169 -1639 211 0 28 56 chr1 162593004 162593040 -80071313 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 657 342 141 14 chr1 162593095 162593598 -80070755 - L3 LINE CR1 -429 1148 582 320 259 191 40 chr1 162593627 162594071 -80070282 - L1MC4 LINE L1 -1 8041 7531 441 261 25 17 chr1 162594570 162594689 -80069664 - MIR SINE MIR -72 190 71 180 0 0 0 chr1 162595228 162595248 -80069105 + (TG)n Simple_repeat Simple_repeat 2 21 0 212 333 44 70 chr1 162595794 162595908 -80068445 - L2 LINE L2 -20 3293 3183 321 306 127 15 chr1 162596109 162596243 -80068110 + MIR SINE MIR 10 158 -104 2112 168 20 6 chr1 162596243 162596758 -80067595 - MER39B LTR ERV1 0 653 4 407 163 174 0 chr1 162596759 162596851 -80067502 + MIR SINE MIR 153 260 -2 286 345 69 72 chr1 162597125 162597473 -80066880 - L2 LINE L2 0 3272 2926 484 314 152 23 chr1 162597746 162598227 -80066126 - L2 LINE L2 -1023 2291 1749 24 53 0 0 chr1 162598288 162598326 -80066027 + AT_rich Low_complexity Low_complexity 1 38 0 2412 43 40 0 chr1 162598371 162598670 -80065683 + AluY SINE Alu 1 311 0 561 233 14 34 chr1 162599019 162599165 -80065188 - L2 LINE L2 0 3313 3171 695 242 114 62 chr1 162599510 162599799 -80064554 + L1MEd LINE L1 318 621 -5498 1123 172 5 30 chr1 162599944 162600169 -80064184 - AluJo SINE Alu 0 311 92 240 300 50 0 chr1 162600589 162600649 -80063704 - L3b LINE CR1 -24 1559 1497 488 327 108 35 chr1 162600651 162600966 -80063387 + L2 LINE L2 2976 3313 0 1898 127 53 13 chr1 162601064 162601238 -80063115 - AluSx SINE Alu 0 312 120 271 0 51 0 chr1 162601238 162601277 -80063076 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1898 127 53 13 chr1 162601277 162601402 -80062951 - AluSx SINE Alu -192 120 1 263 281 0 0 chr1 162601462 162601526 -80062827 + L2 LINE L2 3209 3272 0 318 172 0 14 chr1 162601726 162601971 -80062382 + AluJo SINE Alu 1 282 -20 213 39 0 0 chr1 162601971 162601997 -80062356 + (GA)n Simple_repeat Simple_repeat 2 27 0 278 130 22 0 chr1 162602276 162602322 -80062031 - L2 LINE L2 0 3272 3226 274 211 0 56 chr1 162602325 162602396 -80061957 - MLT1K LTR MaLR -5 583 517 800 160 29 0 chr1 162603648 162603823 -80060530 + CT-rich Low_complexity Low_complexity 1 180 0 1537 170 3 42 chr1 162603844 162604127 -80060226 - AluJo SINE Alu -40 272 1 182 196 22 22 chr1 162604650 162604696 -80059657 + L2 LINE L2 3268 3313 0 287 251 39 26 chr1 162605307 162605486 -80058867 + MIR SINE MIR 5 257 -5 494 334 68 56 chr1 162605623 162606018 -80058335 + L2 LINE L2 2827 3226 -46 192 279 33 33 chr1 162606620 162606681 -80057672 - MIR SINE MIR -102 106 46 2172 116 7 0 chr1 162607328 162607620 -80056733 - AluSq SINE Alu -13 300 7 416 225 50 88 chr1 162607659 162607819 -80056534 + MER63A DNA MER1_type 54 207 -3 1387 223 53 26 chr1 162608298 162608639 -80055714 - MER4D LTR ERV1 0 903 554 1290 140 45 131 chr1 162608682 162609018 -80055335 - MER49 LTR ERV1 -616 307 1 584 279 29 17 chr1 162609667 162609839 -80054514 + MIR SINE MIR 1 174 -88 196 337 79 10 chr1 162611254 162611355 -80052998 - L3 LINE CR1 -19 1558 1451 622 267 41 70 chr1 162611510 162611596 -80052757 - L3 LINE CR1 -121 1456 1369 2131 129 0 7 chr1 162611596 162611913 -80052440 + AluSq SINE Alu 1 313 0 622 267 41 70 chr1 162611913 162612096 -80052257 - L3 LINE CR1 -208 1369 1195 4131 114 16 5 chr1 162612801 162613408 -80050945 - MER39B LTR ERV1 -38 615 2 1477 170 85 0 chr1 162613534 162613805 -80050548 + MER49 LTR ERV1 1 294 -629 1335 247 14 41 chr1 162613830 162614195 -80050158 + MER4D LTR ERV1 549 903 0 2047 193 91 30 chr1 162614849 162615311 -80049042 + LTR2B LTR ERV1 1 490 0 255 301 91 122 chr1 162615334 162615653 -80048700 - L2 LINE L2 -10 3262 2954 189 183 83 17 chr1 162616429 162616489 -80047864 - MIR SINE MIR -56 206 143 * 510 216 82 8 chr1 162616487 162616621 -80047732 + MIR SINE MIR 108 251 -11 590 232 18 0 chr1 162616636 162616748 -80047605 - MIR SINE MIR -131 131 18 776 246 11 5 chr1 162616864 162617051 -80047302 + MER5A DNA MER1_type 2 189 0 623 236 52 87 chr1 162617747 162617906 -80046447 - MIR SINE MIR -2 260 110 2438 77 0 0 chr1 162617906 162618203 -80046150 + AluSx SINE Alu 1 297 -15 623 236 52 87 chr1 162618203 162618272 -80046081 - MIR SINE MIR -152 110 40 497 252 83 65 chr1 162619868 162620098 -80044255 - L2 LINE L2 -4 3309 3076 638 155 17 9 chr1 162620213 162620329 -80044024 - FLAM_C SINE Alu -16 117 1 992 223 61 4 chr1 162621134 162621363 -80042990 + MIR SINE MIR 18 259 -3 204 203 87 29 chr1 162622081 162622150 -80042203 - MIR SINE MIR -56 206 134 242 268 0 85 chr1 162623889 162623971 -80040382 - MIR SINE MIR -75 187 113 193 277 54 89 chr1 162624897 162625009 -80039344 + MIR SINE MIR 16 123 -85 273 363 54 51 chr1 162625562 162625893 -80038460 + L2 LINE L2 2814 3145 -127 626 262 165 5 chr1 162625924 162626130 -80038223 - MIR SINE MIR -12 250 12 398 228 44 96 chr1 162626141 162626277 -80038076 + L2 LINE L2 3144 3272 0 2099 125 0 41 chr1 162627518 162627838 -80036515 + AluSx SINE Alu 4 310 -2 339 312 56 16 chr1 162627854 162627979 -80036374 - L2 LINE L2 0 3313 3184 198 316 10 41 chr1 162628533 162628631 -80035722 + MIR SINE MIR 103 197 -65 2004 120 0 74 chr1 162628971 162629297 -80035056 + AluSx SINE Alu 1 302 -10 1653 168 3 68 chr1 162629395 162629716 -80034637 - AluJb SINE Alu -12 300 1 247 253 24 24 chr1 162630905 162630988 -80033365 - MIR SINE MIR -100 162 80 317 254 0 0 chr1 162631696 162631763 -80032590 - MLT1K LTR MaLR -2 586 520 423 306 95 50 chr1 162632974 162633079 -80031274 - MIR SINE MIR -9 253 154 3415 112 138 65 chr1 162633079 162633723 -80030630 + LTR8 LTR ERV1 1 691 0 423 306 95 50 chr1 162633723 162633859 -80030494 - MIR SINE MIR -108 154 1 21 36 0 0 chr1 162634975 162635003 -80029350 + AT_rich Low_complexity Low_complexity 1 28 0 2221 90 0 0 chr1 162635003 162635309 -80029044 + AluSg SINE Alu 1 306 0 240 35 0 0 chr1 162635944 162635973 -80028380 + (TG)n Simple_repeat Simple_repeat 2 30 0 317 186 14 0 chr1 162636084 162636154 -80028199 + (TA)n Simple_repeat Simple_repeat 2 72 0 219 69 0 0 chr1 162638745 162638774 -80025579 + (A)n Simple_repeat Simple_repeat 1 29 0 1649 184 3 13 chr1 162639015 162639314 -80025039 + AluJo SINE Alu 1 296 -16 862 230 49 65 chr1 162640837 162641207 -80023146 - HAL1 LINE L1 -37 2470 2107 3134 249 106 48 chr1 162641245 162641270 -80023083 - HAL1 LINE L1 -481 2026 2004 1853 186 13 43 chr1 162641270 162641646 -80022707 + MLT1A1 LTR MaLR 1 365 0 3134 249 106 48 chr1 162641646 162642953 -80021400 - HAL1 LINE L1 -503 2004 617 612 263 130 20 chr1 162643030 162643330 -80021023 - L1MC4 LINE L1 -15 8027 7695 842 261 39 81 chr1 162643332 162643542 -80020811 - HAL1 LINE L1 -1972 535 344 1898 149 0 0 chr1 162643542 162643870 -80020483 - AluSx SINE Alu 0 328 1 842 261 39 81 chr1 162643870 162644015 -80020338 - HAL1 LINE L1 -2163 344 194 3393 109 93 112 chr1 162644073 162644740 -80019613 + MER39 LTR ERV1 4 659 -48 2687 20 0 0 chr1 162644740 162645037 -80019316 - AluY SINE Alu -14 297 1 3393 109 93 112 chr1 162645037 162645086 -80019267 + MER39 LTR ERV1 659 707 0 274 252 93 60 chr1 162645183 162645334 -80019019 - HAL1 LINE L1 -2329 178 23 535 238 29 63 chr1 162645869 162645919 -80018434 + MER112 DNA MER1_type 1 51 -209 2042 116 0 27 chr1 162645919 162646257 -80018096 + AluSx SINE Alu 1 312 0 535 238 29 63 chr1 162646257 162646510 -80017843 + MER112 DNA MER1_type 51 258 -2 1865 214 67 0 chr1 162646514 162646990 -80017363 + Charlie4a DNA MER1_type 1 508 0 180 220 250 0 chr1 162647866 162647966 -80016387 + L2 LINE L2 2376 2500 -814 2100 107 7 0 chr1 162649611 162649921 -80014432 - AluSx SINE Alu 0 312 1 210 141 31 31 chr1 162650519 162650583 -80013770 + GA-rich Low_complexity Low_complexity 1 64 0 23 54 0 0 chr1 162650790 162650827 -80013526 + AT_rich Low_complexity Low_complexity 1 37 0 221 208 14 0 chr1 162653573 162653645 -80010708 + (TA)n Simple_repeat Simple_repeat 2 74 0 185 279 0 0 chr1 162656003 162656046 -80008307 + L2 LINE L2 3265 3307 -6 249 194 32 54 chr1 162656128 162656221 -80008132 + L1ME4a LINE L1 5929 6019 -102 22 0 0 0 chr1 162656302 162656324 -80008029 + AT_rich Low_complexity Low_complexity 1 22 0 467 299 118 16 chr1 162656382 162656569 -80007784 + MIR SINE MIR 1 206 -56 348 246 125 62 chr1 162657178 162657418 -80006935 + L1ME1 LINE L1 5564 5818 -303 723 215 57 94 chr1 162657432 162657697 -80006656 + L1ME1 LINE L1 5907 6161 -5 9567 27 0 188 chr1 162658024 162659618 -80004735 - SVA Other Other 0 1386 93 330 260 62 0 chr1 162659637 162659733 -80004620 + L2 LINE L2 2957 3058 -214 27 0 0 0 chr1 162660708 162660735 -80003618 + AT_rich Low_complexity Low_complexity 1 27 0 715 125 0 0 chr1 162661035 162661139 -80003214 - L1PA10 LINE L1 -10 6158 6055 235 186 0 0 chr1 162661271 162661314 -80003039 - L1P LINE L1 -1470 4676 4634 2161 156 15 0 chr1 162662528 162662855 -80001498 - MER1B DNA MER1_type 0 339 8 375 258 61 0 chr1 162663001 162663133 -80001220 + L1ME LINE L1 5633 5772 -390 21 0 0 0 chr1 162663235 162663256 -80001097 + AT_rich Low_complexity Low_complexity 1 21 0 2631 171 27 12 chr1 162663824 162664303 -80000050 + MER66B LTR ERV1 1 486 0 3804 171 57 48 chr1 162664303 162665371 -79998982 + MER66B-int LTR ERV1 1 1114 -5562 635 192 48 16 chr1 162665455 162665580 -79998773 + MER66-int LTR ERV1 2950 3078 -3598 363 64 0 0 chr1 162665587 162665634 -79998719 + MER66-int LTR ERV1 3404 3450 -3226 405 86 0 0 chr1 162665637 162665695 -79998658 + (CAGAA)n Simple_repeat Simple_repeat 2 59 0 2327 92 16 22 chr1 162665696 162666064 -79998289 + MER66-int LTR ERV1 3559 3924 -2752 1394 148 81 46 chr1 162666065 162666348 -79998005 - MSTA LTR MaLR -1 427 135 6352 205 24 3 chr1 162666348 162667565 -79996788 - MSTA-int LTR MaLR -409 1242 1 1763 158 143 31 chr1 162667565 162667950 -79996403 - MSTA LTR MaLR 0 428 1 2581 115 20 65 chr1 162667950 162668107 -79996246 + MER66B-int LTR ERV1 3920 4083 -2593 2216 85 10 23 chr1 162668107 162668413 -79995940 + AluSc SINE Alu 3 304 -5 2581 115 20 65 chr1 162668413 162668760 -79995593 + MER66B-int LTR ERV1 4083 4401 -2275 289 152 0 61 chr1 162668760 162668826 -79995527 - MER72 LTR ERV1 -656 66 5 10960 107 52 31 chr1 162669078 162670796 -79993557 + MER66B-int LTR ERV1 4924 6676 0 2676 153 4 76 chr1 162670796 162671320 -79993033 + MER66B LTR ERV1 1 486 0 307 292 108 8 chr1 162675550 162675670 -79988683 + L2 LINE L2 3182 3313 0 949 135 20 45 chr1 162675930 162675987 -79988366 - MER33 DNA MER1_type -97 65 137 2019 78 4 8 chr1 162675987 162676243 -79988110 - AluSx SINE Alu -14 298 44 949 135 20 45 chr1 162676243 162676386 -79987967 - MER33 DNA MER1_type -24 138 1 22 35 0 0 chr1 162676630 162676659 -79987694 + AT_rich Low_complexity Low_complexity 1 29 0 570 331 22 0 chr1 162676745 162676926 -79987427 - L3 LINE CR1 -339 1238 1054 21 0 0 0 chr1 162678543 162678564 -79985789 + AT_rich Low_complexity Low_complexity 1 21 0 891 325 68 38 chr1 162679562 162680249 -79984104 + L1M4 LINE L1 3543 4250 -1896 255 302 0 40 chr1 162680625 162680751 -79983602 + HAL1 LINE L1 1784 1904 -603 344 281 61 18 chr1 162681692 162681856 -79982497 + L1ME2 LINE L1 2419 2589 -3557 344 261 121 18 chr1 162681918 162682198 -79982155 + L1ME2 LINE L1 2683 2991 -3155 364 212 145 30 chr1 162682323 162682592 -79981761 + L1ME2 LINE L1 3153 3452 -2694 793 295 92 37 chr1 162682670 162683259 -79981094 - L1MC4 LINE L1 0 8042 7422 2449 179 32 2 chr1 162683321 162683823 -79980530 + L1ME2 LINE L1 5626 6142 -22 1946 141 0 3 chr1 162683823 162684114 -79980239 - AluJb SINE Alu -22 290 1 211 367 56 11 chr1 162684129 162684219 -79980134 - MIR3 SINE MIR -107 101 8 183 162 175 0 chr1 162684474 162684527 -79979826 + MIR SINE MIR 74 141 -67 1217 170 0 18 chr1 162684571 162684789 -79979564 + AluJb SINE Alu 67 280 -32 266 0 29 0 chr1 162684789 162684823 -79979530 + (GGAAA)n Simple_repeat Simple_repeat 5 39 0 195 114 0 0 chr1 162684823 162684858 -79979495 + (CGGA)n Simple_repeat Simple_repeat 2 36 0 209 218 129 59 chr1 162684890 162684991 -79979362 + MIR SINE MIR 154 261 -1 713 314 144 65 chr1 162684991 162686137 -79978216 + L2 LINE L2 1736 2971 -343 1699 152 138 0 chr1 162688020 162688316 -79976037 - MER1B DNA MER1_type 0 337 1 2400 76 3 10 chr1 162688341 162688642 -79975711 - AluSp SINE Alu -13 300 2 224 59 29 0 chr1 162688814 162688848 -79975505 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 611 212 93 0 chr1 162689276 162689427 -79974926 + MER2 DNA MER2_type 1 165 -180 372 183 97 0 chr1 162689508 162689601 -79974752 + MER2 DNA MER2_type 109 210 -135 22 35 0 0 chr1 162689627 162689656 -79974697 + AT_rich Low_complexity Low_complexity 1 29 0 194 264 29 114 chr1 162690425 162690497 -79973856 - MIR SINE MIR -65 143 84 654 250 85 73 chr1 162690497 162690745 -79973608 + MIR SINE MIR 2 252 -10 239 152 22 0 chr1 162691022 162691068 -79973285 - MIR SINE MIR -21 241 195 21 0 0 0 chr1 162691178 162691199 -79973154 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 162692111 162692142 -79972211 + AT_rich Low_complexity Low_complexity 1 31 0 311 193 155 0 chr1 162692823 162692903 -79971450 - MIR SINE MIR -65 143 54 609 213 237 12 chr1 162693116 162693369 -79970984 + Charlie7 DNA MER1_type 225 534 -2078 256 187 269 28 chr1 162693365 162693547 -79970806 + Charlie7 DNA MER1_type 2309 2534 -78 * 2029 157 126 22 chr1 162693678 162694131 -79970222 + MLT1D LTR MaLR 6 505 0 423 328 1 9 chr1 162694320 162694476 -79969877 - MIR SINE MIR -56 152 39 659 232 104 45 chr1 162694485 162694705 -79969648 + MIR SINE MIR 30 262 0 201 233 0 17 chr1 162697527 162697587 -79966766 + (CCG)n Simple_repeat Simple_repeat 2 60 0 239 127 0 18 chr1 162699360 162699415 -79964938 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 28 0 0 0 chr1 162700048 162700076 -79964277 + AT_rich Low_complexity Low_complexity 1 28 0 1107 137 52 14 chr1 162700128 162700339 -79964014 + MER20 DNA MER1_type 1 219 0 828 380 54 16 chr1 162701065 162701581 -79962772 - L2 LINE L2 -2074 1240 705 334 333 19 9 chr1 162701696 162701804 -79962549 - MIR SINE MIR -148 114 6 21 0 0 0 chr1 162702146 162702167 -79962186 + AT_rich Low_complexity Low_complexity 1 21 0 294 29 0 0 chr1 162702308 162702343 -79962010 + (CA)n Simple_repeat Simple_repeat 1 35 0 249 338 44 0 chr1 162703691 162703759 -79960594 - L3 LINE CR1 -4 1573 1503 294 227 191 36 chr1 162703863 162703973 -79960380 + L2 LINE L2 3136 3262 -10 390 289 62 16 chr1 162704898 162705092 -79959261 - MIR SINE MIR -50 212 10 187 232 36 0 chr1 162706262 162706318 -79958035 + L2 LINE L2 2921 2978 -335 191 264 81 58 chr1 162706423 162706510 -79957843 + L2 LINE L2 3129 3217 -96 921 281 71 44 chr1 162706601 162707264 -79957089 - L1ME4a LINE L1 -47 6074 5394 410 303 48 12 chr1 162707866 162708031 -79956322 + MIR3 SINE MIR 31 201 -7 215 342 150 8 chr1 162708923 162709043 -79955310 + MIR3 SINE MIR 3 139 -69 354 195 0 0 chr1 162709549 162709626 -79954727 + (TGG)n Simple_repeat Simple_repeat 2 78 0 198 118 0 0 chr1 162709912 162709946 -79954407 + (TC)n Simple_repeat Simple_repeat 2 35 0 195 42 0 0 chr1 162710631 162710655 -79953698 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1797 171 0 17 chr1 162710659 162710946 -79953407 - AluJo SINE Alu -30 282 1 33 0 0 0 chr1 162710970 162711003 -79953350 + AT_rich Low_complexity Low_complexity 1 33 0 668 189 24 12 chr1 162711236 162711405 -79952948 - MER53 DNA DNA -1 188 18 216 0 0 0 chr1 162711408 162711432 -79952921 + (T)n Simple_repeat Simple_repeat 1 24 0 230 276 20 31 chr1 162711461 162711559 -79952794 + L2 LINE L2 2170 2266 -1048 2331 96 0 0 chr1 162712434 162712727 -79951626 - AluSc SINE Alu -16 293 1 952 260 12 28 chr1 162712815 162713069 -79951284 + MIR SINE MIR 4 253 -9 380 288 28 35 chr1 162714404 162714766 -79949587 - L1M4 LINE L1 -564 5614 5255 413 279 115 32 chr1 162714779 162715091 -79949262 - L1M4 LINE L1 -1124 5022 4685 275 164 0 15 chr1 162715125 162715192 -79949161 + (TA)n Simple_repeat Simple_repeat 2 67 0 368 302 79 60 chr1 162715287 162715424 -79948929 - L1M4 LINE L1 -1655 4491 4358 1129 275 87 48 chr1 162715424 162715944 -79948409 + MLT1F LTR MaLR 1 540 -2 368 302 79 60 chr1 162715944 162716226 -79948127 - L1M4 LINE L1 -1788 4358 4064 290 219 88 26 chr1 162716324 162716438 -79947915 - LTR33 LTR ERVL 0 521 401 337 279 104 19 chr1 162716517 162716671 -79947682 - LTR33 LTR ERVL -306 215 49 25 31 0 0 chr1 162716910 162716942 -79947411 + AT_rich Low_complexity Low_complexity 1 32 0 415 351 5 0 chr1 162717451 162717656 -79946697 - HAL1 LINE L1 -875 1632 1427 399 238 19 38 chr1 162718031 162718136 -79946217 + MIR SINE MIR 160 262 0 1931 168 11 8 chr1 162718316 162718673 -79945680 - MER46B DNA MER2_type -3 233 1 290 177 104 67 chr1 162719053 162719160 -79945193 - LTR33A LTR ERVL 0 523 449 534 333 91 37 chr1 162719775 162720223 -79944130 + L2 LINE L2 2703 3184 -129 180 111 0 0 chr1 162720223 162720250 -79944103 + (CA)n Simple_repeat Simple_repeat 2 28 0 534 333 91 37 chr1 162720250 162720378 -79943975 + L2 LINE L2 3184 3304 -9 185 226 32 81 chr1 162720921 162720983 -79943370 + L2 LINE L2 3255 3313 0 * 320 344 0 0 chr1 162720982 162721072 -79943281 - MIR SINE MIR -125 137 48 2010 118 24 3 chr1 162721117 162721405 -79942948 + AluSx SINE Alu 5 298 -14 1304 246 38 16 chr1 162721950 162722316 -79942037 - MLT1A2 LTR MaLR 0 374 1 290 331 105 0 chr1 162722359 162722483 -79941870 - MIR3 SINE MIR -40 168 32 461 277 26 58 chr1 162722774 162722929 -79941424 - MIR SINE MIR -10 252 103 22 56 0 0 chr1 162723146 162723182 -79941171 + AT_rich Low_complexity Low_complexity 1 36 0 258 317 120 84 chr1 162723558 162723892 -79940461 + L2 LINE L2 2919 3264 -8 336 102 0 0 chr1 162725121 162725170 -79939183 + (TG)n Simple_repeat Simple_repeat 1 49 0 258 81 0 0 chr1 162725652 162725689 -79938664 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 375 292 35 0 chr1 162726307 162726420 -79937933 - MIR3 SINE MIR -40 168 52 2240 116 0 10 chr1 162726803 162727106 -79937247 - AluSx SINE Alu -12 300 1 457 320 83 25 chr1 162727174 162727452 -79936901 + MLT1K LTR MaLR 24 317 -271 389 226 152 67 chr1 162727479 162727643 -79936710 + MLT1K LTR MaLR 403 580 -8 245 108 0 0 chr1 162728229 162728266 -79936087 - MER21B LTR ERV1 -620 243 207 211 274 154 43 chr1 162728322 162728439 -79935914 - L2 LINE L2 -2 3270 3141 822 214 82 10 chr1 162730517 162730713 -79933640 + L2 LINE L2 3104 3313 0 503 301 12 73 chr1 162730898 162731144 -79933209 + MER102a DNA MER1_type 99 329 -1 566 248 173 43 chr1 162731235 162731675 -79932678 + MLT1H1 LTR MaLR 59 555 0 375 289 24 87 chr1 162731682 162731890 -79932463 + MIR SINE MIR 68 262 0 580 183 114 0 chr1 162732205 162732336 -79932017 - L2 LINE L2 -36 3277 3132 1459 162 28 21 chr1 162732336 162732674 -79931679 + MER61C LTR ERV1 1 430 -4 215 77 0 26 chr1 162732674 162732713 -79931640 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr1 162733143 162733174 -79931179 + AT_rich Low_complexity Low_complexity 1 31 0 449 277 42 30 chr1 162733397 162733563 -79930790 - MLT1I LTR MaLR -138 271 104 2275 104 3 0 chr1 162733643 162733942 -79930411 - AluSx SINE Alu -12 300 1 233 222 49 12 chr1 162733952 162734033 -79930320 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 348 314 0 19 chr1 162734033 162734138 -79930215 - MIR SINE MIR -128 134 32 2634 217 52 30 chr1 162734437 162735150 -79929203 - MER21B LTR ERV1 -113 750 22 2059 125 0 38 chr1 162735313 162735633 -79928720 - AluSx SINE Alu -3 309 2 779 34 0 59 chr1 162735740 162735842 -79928511 + MER83B LTR ERV1 1 97 -281 2133 129 3 0 chr1 162735842 162736129 -79928224 + AluSc SINE Alu 17 304 -5 779 34 0 59 chr1 162736129 162736145 -79928208 + MER83B LTR ERV1 97 112 -266 * 787 197 122 28 chr1 162736143 162736356 -79927997 + MLT1A2 LTR MaLR 135 367 -7 265 177 51 25 chr1 162736356 162736435 -79927918 + MER46C DNA MER2_type 257 337 -1 1466 214 105 55 chr1 162736644 162737224 -79927129 - LTR1B LTR ERV1 -217 609 1 2248 191 48 55 chr1 162737759 162738303 -79926050 + MER87 LTR ERV1 1 540 -1 418 271 69 131 chr1 162739227 162739518 -79924835 + L2 LINE L2 2957 3229 -43 633 25 13 0 chr1 162739568 162739647 -79924706 - MADE1 DNA Mariner 0 80 1 431 294 196 5 chr1 162741969 162742108 -79922245 + MIR SINE MIR 5 116 -146 282 116 0 0 chr1 162742108 162742151 -79922202 + (TG)n Simple_repeat Simple_repeat 2 44 0 431 294 196 5 chr1 162742151 162742205 -79922148 + MIR SINE MIR 116 235 -27 682 263 67 0 chr1 162742212 162742406 -79921947 - MLT1L LTR MaLR -2 613 407 562 234 19 32 chr1 162742507 162742661 -79921692 - MLT1L LTR MaLR -332 283 132 1996 121 59 7 chr1 162743417 162743707 -79920646 - AluSx SINE Alu -7 305 1 245 86 0 0 chr1 162743821 162743856 -79920497 + MADE1 DNA Mariner 13 47 -33 202 78 98 0 chr1 162743856 162743907 -79920446 + (TA)n Simple_repeat Simple_repeat 1 56 0 259 109 0 0 chr1 162743926 162743972 -79920381 + MADE1 DNA Mariner 35 80 0 306 137 44 55 chr1 162743983 162744165 -79920188 + (TA)n Simple_repeat Simple_repeat 1 180 0 488 157 12 29 chr1 162744183 162744355 -79919998 + (TA)n Simple_repeat Simple_repeat 2 170 0 279 191 16 55 chr1 162744355 162744538 -79919815 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 * 281 265 23 8 chr1 162744527 162744659 -79919694 + (TA)n Simple_repeat Simple_repeat 1 134 0 1865 237 123 10 chr1 162744749 162745326 -79919027 - L2 LINE L2 -1109 2205 1564 4317 130 16 29 chr1 162745326 162746094 -79918259 + MER4E LTR ERV1 1 758 -8 1542 240 96 12 chr1 162746136 162746628 -79917725 - L2 LINE L2 -1818 1496 964 1968 167 39 0 chr1 162746628 162746958 -79917395 - MER61A LTR ERV1 0 343 1 1957 105 36 3 chr1 162746958 162747263 -79917090 - MER61A-int LTR ERV1 0 5217 4903 * 20550 96 27 21 chr1 162747250 162747538 -79916815 - MER61A-int LTR ERV1 -289 6707 6422 5063 153 30 59 chr1 162747538 162748641 -79915712 + MER11C LTR ERVK 1 1071 0 20550 96 27 21 chr1 162748641 162751706 -79912647 - MER61A-int LTR ERV1 -574 6422 1746 273 100 0 0 chr1 162751708 162751748 -79912605 - MER61A-int LTR ERV1 -3858 1359 1320 * 3853 120 108 17 chr1 162751728 162752447 -79911906 - MER61A-int LTR ERV1 -4429 788 4 1812 184 39 3 chr1 162752450 162752781 -79911572 - MER61A LTR ERV1 0 343 1 1952 282 171 8 chr1 162752781 162753583 -79910770 - L2 LINE L2 -2347 967 35 491 325 52 11 chr1 162753852 162754043 -79910310 - MIR SINE MIR -40 222 24 1130 142 0 0 chr1 162754043 162754198 -79910155 - AluJo SINE Alu -26 286 132 195 42 0 0 chr1 162754198 162754222 -79910131 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2235 96 3 17 chr1 162754255 162754556 -79909797 - AluSg SINE Alu -13 297 1 814 177 0 0 chr1 162754580 162754704 -79909649 - AluJo SINE Alu -188 124 1 2214 116 0 0 chr1 162754977 162755269 -79909084 - AluSq SINE Alu -21 292 1 475 272 132 4 chr1 162755534 162755784 -79908569 + L1MC4 LINE L1 7617 7898 -144 327 153 24 12 chr1 162755795 162755880 -79908473 + (CATATA)n Simple_repeat Simple_repeat 2 87 0 248 53 26 0 chr1 162756229 162756267 -79908086 + (TG)n Simple_repeat Simple_repeat 1 39 0 1967 97 29 14 chr1 162756352 162756630 -79907723 - AluSx SINE Alu -19 293 12 378 358 98 0 chr1 162759398 162759613 -79904740 - MIR SINE MIR -7 255 20 22 0 0 0 chr1 162759721 162759743 -79904610 + AT_rich Low_complexity Low_complexity 1 22 0 555 222 257 0 chr1 162759838 162760009 -79904344 - MER58C DNA MER1_type 0 215 1 443 308 70 66 chr1 162761288 162761574 -79902779 + L1MEd LINE L1 86 372 -5747 305 287 141 40 chr1 162761667 162762235 -79902118 + L1MEd LINE L1 607 1231 -4888 379 258 147 55 chr1 162762674 162763000 -79901353 + L1MB2 LINE L1 3599 3954 -2192 507 304 55 8 chr1 162763013 162763266 -79901087 + L1MB2 LINE L1 4006 4270 -1876 2445 219 39 12 chr1 162763291 162763959 -79900394 + L1MB2 LINE L1 4641 5326 -820 2444 160 35 14 chr1 162763959 162764447 -79899906 + L1MB2 LINE L1 5674 6171 0 776 247 77 3 chr1 162764833 162765151 -79899202 + L1ME LINE L1 5491 5863 -307 517 240 60 20 chr1 162765153 162765303 -79899050 + L1ME3A LINE L1 5960 6115 -55 25 51 0 0 chr1 162765551 162765590 -79898763 + AT_rich Low_complexity Low_complexity 1 39 0 881 276 113 62 chr1 162767239 162767445 -79896908 + L2 LINE L2 2381 2575 -738 1842 150 3 33 chr1 162767445 162767752 -79896601 - AluSx SINE Alu -14 298 1 881 276 113 62 chr1 162767752 162768228 -79896125 + L2 LINE L2 2575 3125 -188 315 0 0 0 chr1 162768228 162768263 -79896090 + (CA)n Simple_repeat Simple_repeat 2 36 0 881 276 113 62 chr1 162768263 162768462 -79895891 + L2 LINE L2 3125 3312 -1 21 0 0 0 chr1 162769106 162769127 -79895226 + AT_rich Low_complexity Low_complexity 1 21 0 229 266 97 53 chr1 162769388 162769501 -79894852 - L3 LINE CR1 -85 1492 1375 1901 37 0 0 chr1 162769617 162769832 -79894521 - AluY SINE Alu -16 295 81 2080 209 78 39 chr1 162770395 162771092 -79893261 + L1M4 LINE L1 4520 5243 -903 371 328 97 15 chr1 162771233 162771428 -79892925 + L1M4 LINE L1 4028 4238 -1908 25193 65 7 6 chr1 162771540 162777685 -79886668 + L1PA5 LINE L1 3 6152 -2 1996 122 3 14 chr1 162784173 162784469 -79879884 - AluSx SINE Alu -19 293 1 21 0 0 0 chr1 162786099 162786120 -79878233 + AT_rich Low_complexity Low_complexity 1 21 0 183 374 61 0 chr1 162787002 162787101 -79877252 - L2 LINE L2 -47 3225 3121 21 36 0 0 chr1 162789038 162789066 -79875287 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chr1 162789468 162789503 -79874850 + (CA)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr1 162789592 162789615 -79874738 + (TG)n Simple_repeat Simple_repeat 2 24 0 453 279 144 22 chr1 162789689 162789911 -79874442 + L2 LINE L2 2444 2692 -622 246 378 21 56 chr1 162790212 162790355 -79873998 + L2 LINE L2 3117 3254 -18 1894 176 36 44 chr1 162790864 162791251 -79873102 - MLT1B LTR MaLR 0 390 7 228 308 0 0 chr1 162791941 162792006 -79872347 + A-rich Low_complexity Low_complexity 2 66 0 189 352 49 14 chr1 162792220 162792362 -79871991 + L2 LINE L2 3163 3309 -4 291 310 203 10 chr1 162792676 162792873 -79871480 - MIR SINE MIR -6 256 22 1897 168 34 23 chr1 162793299 162793752 -79870601 + L1MC/D LINE L1 5189 5644 -700 272 357 25 13 chr1 162795182 162795339 -79869014 + MER5B DNA MER1_type 3 161 -17 534 81 0 0 chr1 162795700 162795774 -79868579 - L1PA8 LINE L1 0 6172 6099 222 355 19 19 chr1 162796686 162796793 -79867560 + L2 LINE L2 2985 3091 -181 238 273 0 0 chr1 162796933 162796988 -79867365 + GA-rich Low_complexity Low_complexity 1 55 0 2282 78 7 17 chr1 162797634 162797930 -79866423 - AluY SINE Alu -18 293 1 282 305 31 31 chr1 162797955 162798107 -79866246 + MIR SINE MIR 30 180 -73 1937 179 27 67 chr1 162799337 162799862 -79864491 + Charlie4a DNA MER1_type 3 506 -2 1805 103 19 0 chr1 162799869 162800131 -79864222 + L1PA13 LINE L1 5893 6159 -4 253 301 60 0 chr1 162802231 162802314 -79862039 + LTR67 LTR ERVL 455 542 -15 24 0 0 0 chr1 162802356 162802380 -79861973 + AT_rich Low_complexity Low_complexity 1 24 0 1750 137 38 4 chr1 162802561 162802918 -79861435 + AluJb SINE Alu 22 387 0 320 327 0 0 chr1 162803248 162803355 -79860998 + MER117 DNA MER1_type 9 115 -82 1745 204 50 28 chr1 162804353 162804751 -79859602 - MER90 LTR ERV1 -155 459 53 1515 174 7 3 chr1 162805869 162806163 -79858190 - L1MA7 LINE L1 -22 6269 5975 270 310 20 10 chr1 162806166 162806266 -79858087 - MIR SINE MIR -118 144 44 28 61 0 0 chr1 162806648 162806697 -79857656 + AT_rich Low_complexity Low_complexity 1 49 0 685 268 44 19 chr1 162807036 162807241 -79857112 + Charlie8 DNA MER1_type 2 211 -2206 236 241 69 0 chr1 162807598 162807656 -79856697 + L2 LINE L2 3248 3309 -4 239 272 33 11 chr1 162807767 162807859 -79856494 + (TTCA)n Simple_repeat Simple_repeat 1 94 0 312 311 39 58 chr1 162807937 162808143 -79856210 + L1ME LINE L1 137 338 -5867 1387 264 62 57 chr1 162808626 162809449 -79854904 + L1ME LINE L1 463 1231 -4981 10235 211 33 15 chr1 162809473 162809802 -79854551 + L1M1 LINE L1 3294 3616 -3949 1955 141 3 3 chr1 162809802 162810109 -79854244 - AluSx SINE Alu 0 307 1 10235 211 33 15 chr1 162810109 162811265 -79853088 + L1M1 LINE L1 3616 4750 -2815 483 63 0 0 chr1 162811265 162811328 -79853025 + (TA)n Simple_repeat Simple_repeat 2 64 0 10235 211 33 15 chr1 162811328 162812507 -79851846 + L1M1 LINE L1 4750 6011 -1554 285 59 0 0 chr1 162812509 162812543 -79851810 + Tigger1 DNA MER2_type 2158 2191 -227 454 253 7 7 chr1 162812555 162812733 -79851620 + L1ME LINE L1 2147 2284 -3931 2047 145 7 0 chr1 162812763 162813073 -79851280 + AluSx SINE Alu 1 312 0 455 193 50 0 chr1 162813073 162813192 -79851161 + L1ME LINE L1 2931 3055 -3160 * 840 254 103 11 chr1 162813191 162813550 -79850803 + L1M4 LINE L1 2228 2619 -3527 5208 244 56 39 chr1 162814493 162814618 -79849735 + L1M4 LINE L1 2597 2718 -3428 980 250 19 0 chr1 162814618 162814834 -79849519 + MER58A DNA MER1_type 1 220 -4 5208 244 56 39 chr1 162814834 162815057 -79849296 + L1M4 LINE L1 2718 2936 -3210 1841 138 10 14 chr1 162815057 162815346 -79849007 + AluSx SINE Alu 1 288 -24 5208 244 56 39 chr1 162815346 162817113 -79847240 + L1M4 LINE L1 2936 4749 -1397 854 185 66 106 chr1 162817115 162817191 -79847162 + MER20 DNA MER1_type 2 79 -140 2202 143 67 7 chr1 162817191 162817611 -79846742 - L1MA4 LINE L1 -6 6294 5850 854 185 66 106 chr1 162817611 162817761 -79846592 + MER20 DNA MER1_type 79 219 0 250 170 0 0 chr1 162817763 162817810 -79846543 + L1M1 LINE L1 6164 6210 -1355 546 112 17 35 chr1 162817819 162817935 -79846418 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 743 252 108 23 chr1 162817935 162818193 -79846160 + L1M1 LINE L1 6224 6503 -1062 388 190 0 0 chr1 162818204 162818283 -79846070 - L1P5 LINE L1 -367 5789 5711 * 5994 242 34 23 chr1 162818282 162818510 -79845843 - L1PBb LINE L1 -2424 4425 4201 1635 57 0 102 chr1 162818510 162818755 -79845598 - AluY SINE Alu -6 305 86 5994 242 34 23 chr1 162818755 162818925 -79845428 - L1PBb LINE L1 -2648 4201 4034 1928 141 0 29 chr1 162818925 162819231 -79845122 - AluSq SINE Alu -16 297 1 5994 242 34 23 chr1 162819231 162821396 -79842957 - L1PBb LINE L1 -2815 4034 1787 2583 108 6 3 chr1 162821396 162821757 -79842596 + THE1B LTR MaLR 1 362 -2 5994 242 34 23 chr1 162821757 162822214 -79842139 - L1PBb LINE L1 -5062 1787 1336 383 257 19 9 chr1 162822188 162822293 -79842060 - L1PBb LINE L1 -5272 1577 1472 * 381 349 28 28 chr1 162822293 162822617 -79841736 - L1PBb LINE L1 -5286 1563 1240 897 304 104 31 chr1 162823323 162823774 -79840579 - L1PBb LINE L1 -6356 494 11 253 333 18 26 chr1 162823990 162824104 -79840249 - MIR3 SINE MIR -11 197 85 27 62 0 0 chr1 162824637 162824685 -79839668 + AT_rich Low_complexity Low_complexity 1 48 0 258 235 97 49 chr1 162825039 162825167 -79839186 - MIR SINE MIR -75 133 23 271 308 62 39 chr1 162825394 162825524 -79838829 + MIR SINE MIR 21 153 -109 1154 160 9 32 chr1 162826184 162826403 -79837950 - L1PB4 LINE L1 -2 6154 5941 1641 210 39 6 chr1 162826715 162827053 -79837300 - MER4D LTR ERV1 -8 895 547 536 257 27 9 chr1 162827051 162827223 -79837130 - MER4E LTR ERV1 -588 284 1 * 305 278 67 117 chr1 162827332 162827512 -79836841 + MIR3 SINE MIR 20 190 -18 1887 163 0 0 chr1 162827621 162827904 -79836449 - AluJb SINE Alu -29 283 1 256 220 0 0 chr1 162828039 162828089 -79836264 + PABL_B LTR ERV1 1 50 -617 819 300 73 57 chr1 162828117 162828751 -79835602 + PABL_B LTR ERV1 24 667 0 30 27 0 0 chr1 162828916 162828953 -79835400 + AT_rich Low_complexity Low_complexity 1 37 0 242 382 15 0 chr1 162828997 162829124 -79835229 - MIR SINE MIR -84 124 41 2015 158 0 0 chr1 162829482 162829792 -79834561 + AluSx SINE Alu 1 310 -2 251 224 0 0 chr1 162830714 162830772 -79833581 + A-rich Low_complexity Low_complexity 1 58 0 256 280 89 110 chr1 162831012 162831248 -79833105 - MIR SINE MIR -3 259 29 257 266 0 25 chr1 162831387 162831466 -79832887 - MIR SINE MIR -92 116 40 464 284 111 52 chr1 162831796 162832205 -79832148 + MLT1K LTR MaLR 175 615 0 240 292 90 11 chr1 162832234 162832323 -79832030 - MIR SINE MIR -153 109 14 23 0 0 0 chr1 162832952 162832975 -79831378 + AT_rich Low_complexity Low_complexity 1 23 0 2795 7 0 3 chr1 162833148 162833452 -79830901 - AluY SINE Alu -8 303 1 398 338 45 27 chr1 162834393 162834615 -79829738 - L3 LINE CR1 -340 1237 1012 378 236 174 25 chr1 162836373 162836534 -79827819 - MER5A DNA MER1_type 0 189 5 1553 199 80 15 chr1 162837458 162837869 -79826484 + Charlie4a DNA MER1_type 17 454 -54 705 150 0 0 chr1 162839391 162839524 -79824829 + GA-rich Low_complexity Low_complexity 3 135 0 1683 220 107 9 chr1 162839970 162840430 -79823923 + L1ME2 LINE L1 5569 6073 -91 229 229 0 0 chr1 162840531 162840579 -79823774 + A-rich Low_complexity Low_complexity 1 48 0 650 298 186 30 chr1 162840604 162841081 -79823272 - L2 LINE L2 -121 3192 2655 470 279 120 82 chr1 162843366 162844308 -79820045 - L2 LINE L2 -3 3310 2310 375 109 0 0 chr1 162845194 162845249 -79819104 - L1MA8 LINE L1 -35 6256 6202 3784 244 34 57 chr1 162847068 162848626 -79815727 + L2 LINE L2 1756 3276 -37 193 211 322 0 chr1 162848944 162849034 -79815319 - L2 LINE L2 -5 3308 3190 547 183 19 2 chr1 162849166 162849270 -79815083 + MER5A DNA MER1_type 4 109 -80 646 304 23 28 chr1 162849638 162849855 -79814498 + MIR SINE MIR 15 230 -32 279 296 61 17 chr1 162849979 162850094 -79814259 - L2 LINE L2 -209 3104 2985 199 316 31 10 chr1 162850141 162850239 -79814114 - L2 LINE L2 -493 2821 2722 202 204 143 0 chr1 162850680 162850729 -79813624 + MIR SINE MIR 201 256 -6 * 255 156 0 22 chr1 162850695 162850740 -79813613 + L2 LINE L2 3227 3270 -2 798 168 5 47 chr1 162851787 162851977 -79812376 - MER69 DNA AcHobo -9 2517 2336 1210 309 30 21 chr1 162853002 162853433 -79810920 + HERV16 LTR ERVL 364 798 -4198 1666 306 32 11 chr1 162853520 162854075 -79810278 + HERV16 LTR ERVL 2322 2888 -2108 265 379 95 4 chr1 162854183 162854447 -79809906 + L2 LINE L2 2326 2613 -701 358 283 30 10 chr1 162854508 162854607 -79809746 + MIR SINE MIR 46 146 -62 276 350 103 43 chr1 162854700 162855283 -79809070 + L2 LINE L2 2613 3245 -27 2217 96 26 6 chr1 162855416 162855729 -79808624 + MLT2A1 LTR ERVL 1 319 -125 228 122 0 0 chr1 162855724 162855773 -79808580 + LTR66 LTR ERVL 391 439 -171 * 246 167 0 0 chr1 162855781 162855841 -79808512 + (TA)n Simple_repeat Simple_repeat 2 61 0 304 188 0 99 chr1 162855844 162855945 -79808408 + L1MC4 LINE L1 6613 6703 -1339 302 258 0 21 chr1 162855982 162856075 -79808278 + L1MC4 LINE L1 6613 6703 -1339 555 195 6 9 chr1 162856083 162856439 -79807914 + (TA)n Simple_repeat Simple_repeat 1 354 0 44789 67 6 2 chr1 162856439 162861946 -79802407 + HERVL-A1 LTR ERVL 125 5654 0 3114 93 20 40 chr1 162861946 162862345 -79802008 + MLT2A1 LTR ERVL 1 392 -52 246 32 0 0 chr1 162862345 162862376 -79801977 + (CA)n Simple_repeat Simple_repeat 2 32 0 3114 93 20 40 chr1 162862376 162862426 -79801927 + MLT2A1 LTR ERVL 392 441 -3 221 240 231 29 chr1 162863305 162863409 -79800944 - L2 LINE L2 -1 3312 3188 1907 183 0 3 chr1 162863526 162863837 -79800516 + AluJb SINE Alu 1 310 -2 290 315 43 106 chr1 162864073 162864327 -79800026 + L2 LINE L2 3029 3266 -6 2282 125 0 0 chr1 162864463 162864768 -79799585 + AluSx SINE Alu 1 305 -7 6069 136 8 6 chr1 162865537 162866865 -79797488 + L1PA15 LINE L1 4833 6165 0 22 0 0 0 chr1 162866865 162866887 -79797466 + AT_rich Low_complexity Low_complexity 1 22 0 360 295 57 0 chr1 162867326 162867431 -79796922 - L2 LINE L2 -2 3270 3160 233 287 194 16 chr1 162868992 162869121 -79795232 + MIR SINE MIR 32 183 -79 260 211 189 11 chr1 162869335 162869430 -79794923 - LTR33A LTR ERVL 0 523 412 239 321 111 0 chr1 162869502 162869664 -79794689 - LTR33A LTR ERVL -230 293 114 420 272 51 84 chr1 162869895 162870266 -79794087 + L1ME LINE L1 4342 4700 -1446 28 0 0 0 chr1 162870280 162870308 -79794045 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr1 162870332 162870375 -79793978 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr1 162870558 162870582 -79793771 + AT_rich Low_complexity Low_complexity 1 24 0 3366 184 86 20 chr1 162870825 162871489 -79792864 + MER50 LTR ERV1 4 711 -23 351 286 117 66 chr1 162871494 162871804 -79792549 + L1ME LINE L1 5289 5641 -480 2020 125 7 0 chr1 162871804 162872091 -79792262 + AluSx SINE Alu 3 291 -21 351 286 117 66 chr1 162872091 162872280 -79792073 + L1ME LINE L1 5641 5819 -302 339 301 80 89 chr1 162872489 162872791 -79791562 + L2 LINE L2 2638 2936 -378 433 256 65 42 chr1 162872805 162872973 -79791380 + MER20B DNA MER1_type 3 174 -609 622 247 93 89 chr1 162873058 162873349 -79791004 + L2 LINE L2 3021 3312 -1 4275 88 25 16 chr1 162873463 162874011 -79790342 - MER41A LTR ERV1 -1 553 1 333 291 145 57 chr1 162874026 162874120 -79790233 + MIR SINE MIR 16 100 -162 2381 75 7 10 chr1 162874120 162874428 -79789925 - AluSp SINE Alu -6 307 1 333 291 145 57 chr1 162874428 162874560 -79789793 + MIR SINE MIR 100 262 0 2176 111 3 0 chr1 162875812 162876101 -79788252 + AluSq SINE Alu 1 290 -23 435 265 5 70 chr1 162876522 162876705 -79787648 - MIR SINE MIR -56 152 20 195 42 0 0 chr1 162876777 162876801 -79787552 + (GA)n Simple_repeat Simple_repeat 1 24 0 28 48 0 0 chr1 162876871 162876913 -79787440 + AT_rich Low_complexity Low_complexity 1 42 0 247 260 68 14 chr1 162877141 162877214 -79787139 + MIR SINE MIR 120 196 -66 547 301 43 47 chr1 162877263 162877519 -79786834 + L3 LINE CR1 1317 1571 -6 1247 265 221 13 chr1 162877715 162878436 -79785917 + L2 LINE L2 2433 3313 0 205 175 0 0 chr1 162878436 162878476 -79785877 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 283 343 0 58 chr1 162880643 162880780 -79783573 - L2 LINE L2 -10 3262 3134 278 334 30 15 chr1 162881115 162881218 -79783135 - MIR SINE MIR -106 102 3 2191 87 0 24 chr1 162881386 162881684 -79782669 - AluY SINE Alu -19 292 2 1007 167 13 62 chr1 162882143 162882370 -79781983 + MER20 DNA MER1_type 2 217 -2 2294 187 10 49 chr1 162884238 162884805 -79779548 + LTR27 LTR ERV1 1 1252 -137 21 0 0 0 chr1 162885333 162885354 -79778999 + AT_rich Low_complexity Low_complexity 1 21 0 1855 174 0 23 chr1 162885506 162885811 -79778542 - AluJb SINE Alu -14 298 1 258 290 86 0 chr1 162885956 162886049 -79778304 - MIR3 SINE MIR -35 173 73 739 148 42 7 chr1 162886337 162886479 -79777874 + L1PA6 LINE L1 6005 6151 -3 327 296 44 52 chr1 162886491 162886741 -79777612 + L1M4 LINE L1 4416 4663 -1483 219 328 0 0 chr1 162886820 162886881 -79777472 + L2 LINE L2 3235 3295 -18 248 217 0 87 chr1 162887041 162887133 -79777220 + L1P LINE L1 4908 4991 -1155 3506 130 26 6 chr1 162888495 162889483 -79774870 - L1P4 LINE L1 -478 5683 4678 3460 96 17 11 chr1 162889485 162890005 -79774348 + L1PA13 LINE L1 5640 6162 -1 272 269 0 93 chr1 162892149 162892257 -79772096 + LTR16A1 LTR ERVL 271 368 -89 221 298 122 62 chr1 162892612 162892981 -79771372 - L2 LINE L2 -2 3311 2921 1648 101 7 101 chr1 162897459 162897569 -79766784 + AluSp SINE Alu 42 161 -160 312 27 0 0 chr1 162897569 162897606 -79766747 + (TA)n Simple_repeat Simple_repeat 2 38 0 1648 101 7 101 chr1 162897606 162897801 -79766552 + AluSp SINE Alu 161 321 0 196 313 151 45 chr1 162898166 162898431 -79765922 - L2 LINE L2 -2402 912 620 207 341 71 55 chr1 162899448 162899703 -79764650 - L2 LINE L2 -1823 1491 1233 978 114 0 0 chr1 162899916 162900047 -79764306 + AluSc SINE Alu 1 131 -178 253 260 14 151 chr1 162900125 162900162 -79764191 - L2 LINE L2 -2440 874 834 1848 112 14 0 chr1 162900162 162900456 -79763897 + L1MA3 LINE L1 6008 6305 0 253 260 14 151 chr1 162900456 162900564 -79763789 - L2 LINE L2 -2480 834 749 458 221 24 31 chr1 162901781 162901908 -79762445 - MLT1H LTR MaLR -419 130 5 22 35 0 0 chr1 162902080 162902109 -79762244 + AT_rich Low_complexity Low_complexity 1 29 0 186 143 0 0 chr1 162902661 162902696 -79761657 + (TC)n Simple_repeat Simple_repeat 1 35 0 26 30 0 0 chr1 162903630 162903663 -79760690 + AT_rich Low_complexity Low_complexity 1 33 0 739 289 129 11 chr1 162904675 162905039 -79759314 - LTR16C LTR ERVL -2 489 83 379 279 147 84 chr1 162905221 162905411 -79758942 - MIR SINE MIR -13 249 48 463 321 24 12 chr1 162905509 162905677 -79758676 + MIR3 SINE MIR 33 202 -6 25 0 0 0 chr1 162905917 162905942 -79758411 + AT_rich Low_complexity Low_complexity 1 25 0 972 244 48 0 chr1 162906019 162906248 -79758105 + MIR SINE MIR 23 262 0 2424 76 0 10 chr1 162906367 162906681 -79757672 - AluY SINE Alu 0 311 1 2099 168 78 12 chr1 162907615 162908015 -79756338 + MSTB LTR MaLR 1 426 0 7680 192 32 5 chr1 162908016 162909566 -79754787 + MSTB-int LTR MaLR 2 1593 -58 1210 135 68 5 chr1 162909567 162909789 -79754564 + MSTB LTR MaLR 187 422 -4 1031 283 97 33 chr1 162909889 162910465 -79753888 + MLT1L LTR MaLR 1 613 -2 440 313 62 11 chr1 162910583 162910759 -79753594 - MIR SINE MIR -38 224 40 21 0 0 0 chr1 162911096 162911117 -79753236 + AT_rich Low_complexity Low_complexity 1 21 0 847 219 19 60 chr1 162911174 162911439 -79752914 + L1M4b LINE L1 71 324 -6535 566 308 27 62 chr1 162914376 162914782 -79749571 + L2 LINE L2 2921 3312 -1 327 284 55 9 chr1 162915025 162915134 -79749219 + MIR SINE MIR 13 126 -136 312 330 173 42 chr1 162915100 162915291 -79749062 + L2 LINE L2 3057 3272 0 * 282 314 107 18 chr1 162915363 162915532 -79748821 + L2 LINE L2 2710 2893 -421 309 265 19 80 chr1 162915686 162915848 -79748505 + L2 LINE L2 3158 3309 -4 349 231 15 82 chr1 162915978 162916112 -79748241 + L1MA10 LINE L1 5209 5333 -813 8539 198 22 11 chr1 162916114 162918228 -79746125 + L1PA16 LINE L1 3178 5325 -841 8991 25 0 1 chr1 162918228 162920094 -79744259 + L1PA4 LINE L1 4318 6182 0 8539 198 22 11 chr1 162920094 162920945 -79743408 + L1PA16 LINE L1 5325 6165 -1 4333 179 59 11 chr1 162920940 162921912 -79742441 + L1MA10 LINE L1 5317 6334 0 * 21 71 0 0 chr1 162921998 162922040 -79742313 + AT_rich Low_complexity Low_complexity 1 42 0 931 59 0 0 chr1 162923189 162923308 -79741045 + L1PA5 LINE L1 6031 6149 -5 608 250 75 54 chr1 162924189 162924234 -79740119 + L1MC4 LINE L1 6557 6600 -1442 429 66 0 0 chr1 162924234 162924295 -79740058 + (TA)n Simple_repeat Simple_repeat 2 62 0 608 250 75 54 chr1 162924295 162924489 -79739864 + L1MC4 LINE L1 6600 6801 -1241 1744 169 3 17 chr1 162924490 162924780 -79739573 + AluJb SINE Alu 1 286 -26 287 156 31 0 chr1 162924780 162924844 -79739509 + G-rich Low_complexity Low_complexity 3 68 0 1726 218 46 48 chr1 162924866 162925674 -79738679 + L1MC4 LINE L1 6789 7758 -284 2317 103 7 0 chr1 162925674 162925976 -79738377 + AluSq SINE Alu 1 304 -9 1726 218 46 48 chr1 162925976 162926095 -79738258 + L1MC4 LINE L1 7758 7876 -166 615 207 43 0 chr1 162926734 162926874 -79737479 - L1MD3 LINE L1 -821 7174 7029 1080 238 63 20 chr1 162926945 162927244 -79737109 - L1MD3 LINE L1 -8 7987 7676 * 3515 232 33 23 chr1 162927229 162929003 -79735350 - L1MC3 LINE L1 -743 5403 4479 262 302 28 9 chr1 162929248 162929354 -79734999 - MIR SINE MIR -37 225 118 409 83 56 0 chr1 162929667 162929739 -79734614 - L1MA8 LINE L1 -7 6284 6209 198 0 0 0 chr1 162930129 162930151 -79734202 + (A)n Simple_repeat Simple_repeat 1 22 0 29 0 0 0 chr1 162930544 162930573 -79733780 + AT_rich Low_complexity Low_complexity 1 29 0 595 320 98 30 chr1 162931597 162931963 -79732390 - L2 LINE L2 -893 2421 2031 360 345 92 65 chr1 162932279 162932867 -79731486 - L2 LINE L2 -2217 1097 475 931 181 105 6 chr1 162932867 162933038 -79731315 - MER5A DNA MER1_type 0 189 2 360 345 92 65 chr1 162933038 162933339 -79731014 - L2 LINE L2 -2839 475 184 32 26 0 0 chr1 162933884 162933923 -79730430 + AT_rich Low_complexity Low_complexity 1 39 0 229 154 0 0 chr1 162934369 162934408 -79729945 - MLT1D-int LTR MaLR -351 1020 982 608 256 54 59 chr1 162934582 162934785 -79729568 - MLT1D-int LTR MaLR -509 862 661 315 164 0 18 chr1 162934833 162934888 -79729465 - MLT1D-int LTR MaLR -711 660 607 377 92 0 25 chr1 162934941 162935010 -79729343 - MLT2B3 LTR ERVL 0 554 393 384 227 102 8 chr1 162935054 162935182 -79729171 - MLT2B3 LTR ERVL -20 534 395 839 185 0 2 chr1 162935203 162935374 -79728979 - MLT2B3 LTR ERVL -350 170 2 2246 234 38 12 chr1 162935374 162935950 -79728403 - MLT1D-int LTR MaLR -780 591 1 2045 158 132 7 chr1 162935950 162936360 -79727993 - MLT1D LTR MaLR 0 505 45 2342 214 85 16 chr1 162936378 162936619 -79727734 - L1MDa LINE L1 -3074 3466 3243 2306 68 7 29 chr1 162936619 162936926 -79727427 - AluY SINE Alu -11 300 1 2342 214 85 16 chr1 162936926 162938038 -79726315 - L1MDa LINE L1 -3297 3243 2022 740 232 39 17 chr1 162938038 162938219 -79726134 - MER58A DNA MER1_type -14 210 26 2444 70 0 7 chr1 162938468 162938770 -79725583 - AluY SINE Alu -11 300 1 25 108 0 0 chr1 162938876 162938978 -79725375 + AT_rich Low_complexity Low_complexity 1 102 0 272 232 152 48 chr1 162939773 162939898 -79724455 + L2 LINE L2 2040 2177 -1137 583 257 28 28 chr1 162939899 162940117 -79724236 - MER112 DNA MER1_type -2 258 41 1751 245 47 130 chr1 162940192 162941140 -79723213 + L2 LINE L2 2181 3052 -261 8365 144 15 25 chr1 162941377 162943342 -79721011 + L1PA8 LINE L1 412 2367 -4094 8348 92 8 10 chr1 162943349 162945339 -79719014 + L1PA8 LINE L1 4505 6487 0 4904 55 43 3 chr1 162945650 162946281 -79718072 + PABL_A LTR ERV1 2 657 -3 6055 99 8 42 chr1 162946284 162947220 -79717133 + PABL_A-int LTR ERV1 1 904 -4111 3729 45 16 2 chr1 162947201 162947692 -79716661 + PABL_A-int LTR ERV1 1152 1649 -3366 * 889 167 204 41 chr1 162947692 162947913 -79716440 - LTR8 LTR ERV1 -434 257 1 11801 96 55 25 chr1 162947913 162950148 -79714205 + LTR19-int LTR ERV1 1738 4465 -1121 724 181 42 0 chr1 162950157 162950301 -79714052 + MER5A DNA MER1_type 33 182 -7 532 276 43 37 chr1 162950354 162950517 -79713836 + MIR SINE MIR 21 186 -22 196 338 117 13 chr1 162951075 162951152 -79713201 + L2 LINE L2 3128 3212 -60 582 121 24 0 chr1 162951159 162951242 -79713111 - MER1B DNA MER1_type -77 220 136 423 192 71 20 chr1 162951240 162951339 -79713014 - MER1B DNA MER1_type -193 104 1 * 293 289 53 0 chr1 162951350 162951426 -79712927 + L2 LINE L2 3193 3272 0 235 328 83 28 chr1 162951521 162951701 -79712652 - MIR SINE MIR -50 212 23 189 0 0 0 chr1 162951802 162951823 -79712530 + (A)n Simple_repeat Simple_repeat 1 21 0 468 220 7 14 chr1 162952841 162952982 -79711371 + CT-rich Low_complexity Low_complexity 4 143 0 1782 141 3 28 chr1 162954445 162954735 -79709618 + AluSx SINE Alu 17 299 -13 210 37 0 0 chr1 162955336 162955363 -79708990 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 183 273 0 0 chr1 162955438 162955493 -79708860 + L2 LINE L2 2460 2514 -800 634 297 84 8 chr1 162955502 162955741 -79708612 - MIR SINE MIR 0 262 6 726 245 177 23 chr1 162955772 162956437 -79707916 + L2 LINE L2 2544 3313 0 2457 58 6 16 chr1 162956685 162956997 -79707356 + AluY SINE Alu 1 309 -2 180 0 0 0 chr1 162957004 162957024 -79707329 + (CAA)n Simple_repeat Simple_repeat 2 21 0 224 122 24 0 chr1 162957077 162957118 -79707235 + GA-rich Low_complexity Low_complexity 1 42 0 256 208 19 0 chr1 162957155 162957208 -79707145 - MIR SINE MIR -38 224 171 1261 260 101 52 chr1 162957214 162957675 -79706678 - MLT1H1 LTR MaLR -6 549 58 1609 154 63 11 chr1 162957675 162957839 -79706514 - AluSx SINE Alu -12 300 113 405 0 0 0 chr1 162957839 162957884 -79706469 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1609 154 63 11 chr1 162957884 162958004 -79706349 - AluSx SINE Alu -199 113 1 1261 260 101 52 chr1 162958004 162958065 -79706288 - MLT1H1 LTR MaLR -497 58 1 270 0 0 0 chr1 162958396 162958426 -79705927 + (TA)n Simple_repeat Simple_repeat 2 31 0 428 269 110 0 chr1 162958483 162958628 -79705725 + MIR3 SINE MIR 40 200 -8 394 308 83 13 chr1 162959636 162959792 -79704561 - MIR3 SINE MIR -22 186 20 2492 190 61 11 chr1 162960282 162960820 -79703533 - L1MB8 LINE L1 -2 6176 5612 368 306 27 0 chr1 162962148 162962259 -79702094 + MIR SINE MIR 42 155 -107 407 191 16 71 chr1 162962259 162962385 -79701968 + MLT1J2 LTR MaLR 1 119 -331 254 188 0 0 chr1 162962485 162962533 -79701820 + MER74B LTR ERVL 1 48 -574 1138 237 40 34 chr1 162962605 162962959 -79701394 + MER74B LTR ERVL 200 555 -67 307 298 32 16 chr1 162963040 162963164 -79701189 + MLT1I LTR MaLR 284 409 0 193 306 20 51 chr1 162963179 162963277 -79701076 + MIR SINE MIR 168 262 0 575 209 184 6 chr1 162963980 162964138 -79700215 + MER5A DNA MER1_type 4 189 0 728 249 144 22 chr1 162964746 162964975 -79699378 - MIR SINE MIR 0 262 6 21 36 0 0 chr1 162966277 162966305 -79698048 + AT_rich Low_complexity Low_complexity 1 28 0 407 319 133 47 chr1 162966836 162967137 -79697216 - L1MB8 LINE L1 -537 5584 5258 1315 258 47 9 chr1 162967224 162967542 -79696811 + MSTD LTR MaLR 9 338 -58 7149 54 5 0 chr1 162967543 162968496 -79695857 + L1PA7 LINE L1 5197 6153 -1 369 145 72 0 chr1 162968572 162968641 -79695712 + MSTD LTR MaLR 323 396 0 403 337 101 38 chr1 162969003 162969499 -79694854 + L2 LINE L2 2328 2854 -460 746 341 115 57 chr1 162969750 162971149 -79693204 - L2 LINE L2 -4 3268 1798 193 221 325 0 chr1 162971585 162971662 -79692691 - MIR3 SINE MIR -15 193 92 2303 148 25 49 chr1 162972651 162973096 -79691257 + Tigger2a DNA MER2_type 1 434 0 186 179 51 0 chr1 162973322 162973361 -79690992 - MER5A DNA MER1_type -51 138 98 1521 262 97 45 chr1 162974667 162975085 -79689268 + HAL1 LINE L1 4 466 -2041 2392 91 0 0 chr1 162975085 162975393 -79688960 - AluY SINE Alu -3 308 1 1521 262 97 45 chr1 162975393 162975592 -79688761 + HAL1 LINE L1 466 653 -1854 603 320 28 53 chr1 162976725 162977047 -79687306 - L2 LINE L2 -12 3301 2988 445 222 212 72 chr1 162977236 162977470 -79686883 - MIR SINE MIR 0 262 7 229 206 32 48 chr1 162977835 162977898 -79686455 + L2 LINE L2 3246 3307 -6 408 71 0 0 chr1 162978968 162979024 -79685329 + (CA)n Simple_repeat Simple_repeat 2 57 0 1310 216 35 8 chr1 162979851 162980110 -79684243 - AluJo SINE Alu -46 266 1 279 0 0 0 chr1 162980918 162980949 -79683404 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 286 145 0 87 chr1 162981530 162981599 -79682754 - L1M4c LINE L1 -4970 1572 1510 * 1725 236 30 2 chr1 162981595 162982095 -79682258 + L1M4c LINE L1 1570 2083 -4563 229 191 29 29 chr1 162982108 162982176 -79682177 + L1M4c LINE L1 1160 1227 -5157 1939 109 17 20 chr1 162982176 162982478 -79681875 + THE1C LTR MaLR 75 375 0 9118 129 60 24 chr1 162982478 162984002 -79680351 + THE1C-int LTR MaLR 1 1580 0 2450 124 8 36 chr1 162984002 162984388 -79679965 + THE1C LTR MaLR 1 375 0 473 236 29 14 chr1 162984419 162984559 -79679794 + L1M4c LINE L1 2895 3036 -3346 853 235 92 4 chr1 162984583 162984843 -79679510 - MER21B LTR ERV1 -52 811 529 2502 127 52 12 chr1 162984844 162985271 -79679082 + MER65A LTR ERV1 1 444 -1 6897 201 79 61 chr1 162985324 162987067 -79677286 + MER65A-int LTR ERV1 53 1763 -3108 9037 183 21 16 chr1 162987067 162989687 -79674666 + L1PA13 LINE L1 3520 6160 -3 7508 33 0 0 chr1 162989697 162991222 -79673131 + L1PA2 LINE L1 4630 6154 -1 6897 201 79 61 chr1 162991222 162991860 -79672493 + MER65A-int LTR ERV1 1771 2488 -2383 614 234 5 30 chr1 162991974 162992171 -79672182 + MER4-int LTR ERV1 1541 1732 -6388 1997 154 7 0 chr1 162992186 162992479 -79671874 - AluSx SINE Alu -17 295 1 2158 108 7 3 chr1 162992777 162993072 -79671281 + AluSx SINE Alu 1 296 -16 638 164 27 49 chr1 162993089 162993272 -79671081 + MER4-int LTR ERV1 3533 3711 -2887 5670 74 94 1 chr1 162993280 162994036 -79670317 - LTR12 LTR ERV1 0 826 1 5380 98 1 5 chr1 162994036 162994813 -79669540 - HERV9 LTR ERV1 0 8399 7626 2148 183 101 70 chr1 162994811 162995685 -79668668 - HERV9 LTR ERV1 -5156 1740 840 * 1190 133 5 0 chr1 162995686 162995874 -79668479 - HERV9 LTR ERV1 -3455 4944 4756 * 12966 113 9 10 chr1 162995873 162998635 -79665718 - HERV9 LTR ERV1 -5427 2972 300 1137 184 55 86 chr1 162998770 162999435 -79664918 + MER65A-int LTR ERV1 3741 4418 -1913 1999 209 114 28 chr1 162999465 163000213 -79664140 + MER65A-int LTR ERV1 3078 4077 -938 2469 218 47 20 chr1 163000378 163001512 -79662841 + MER65A-int LTR ERV1 3604 4871 0 1977 139 20 127 chr1 163001512 163002010 -79662343 + MER65A LTR ERV1 1 445 0 1286 251 82 63 chr1 163002010 163002520 -79661833 - MER21B LTR ERV1 -332 531 12 599 216 84 5 chr1 163002541 163002754 -79661599 + L1MB7 LINE L1 2792 3021 -3125 755 207 61 18 chr1 163002760 163002924 -79661429 + AluJo SINE Alu 122 292 -20 6803 207 54 20 chr1 163002934 163004285 -79660068 + L1MB7 LINE L1 3049 4354 -1830 2093 113 0 24 chr1 163004285 163004604 -79659749 - AluSx SINE Alu 0 312 1 6803 207 54 20 chr1 163004604 163006284 -79658069 + L1MB7 LINE L1 4354 6177 -7 265 417 0 0 chr1 163006479 163006594 -79657759 - MIR3 SINE MIR -33 175 61 201 132 0 0 chr1 163007236 163007274 -79657079 + (CA)n Simple_repeat Simple_repeat 1 38 0 786 264 0 0 chr1 163007623 163007797 -79656556 + MER45A DNA AcHobo 2 175 -3 454 296 68 6 chr1 163008127 163008289 -79656064 - MIR SINE MIR -23 239 68 19631 158 33 10 chr1 163008290 163011294 -79653059 + L1MA2 LINE L1 75 3008 -4715 1572 71 5 10 chr1 163011294 163011492 -79652861 - AluY SINE Alu -20 291 95 19631 158 33 10 chr1 163011492 163015658 -79648695 + L1MA2 LINE L1 3008 7418 -305 184 349 0 0 chr1 163016420 163016463 -79647890 + L2 LINE L2 3138 3180 -92 387 60 0 0 chr1 163017493 163017543 -79646810 + (TG)n Simple_repeat Simple_repeat 2 51 0 718 278 43 13 chr1 163017681 163017915 -79646438 - LTR16C LTR ERVL 0 491 251 503 230 71 8 chr1 163019151 163019277 -79645076 - MIR SINE MIR -70 192 59 2198 223 142 5 chr1 163019278 163019294 -79645059 - MER76 LTR ERV 0 688 676 387 0 0 0 chr1 163019294 163019337 -79645016 + (GA)n Simple_repeat Simple_repeat 1 43 0 2198 223 142 5 chr1 163019337 163019925 -79644428 - MER76 LTR ERV -12 676 1 273 29 0 0 chr1 163021048 163021083 -79643270 - MADE1 DNA Mariner 0 80 46 242 324 28 19 chr1 163022140 163022248 -79642105 - MIR3 SINE MIR -13 195 87 250 332 51 43 chr1 163023166 163023401 -79640952 + L2 LINE L2 782 1018 -2296 200 398 0 9 chr1 163023522 163023635 -79640718 + L2 LINE L2 2260 2371 -943 247 339 18 77 chr1 163024150 163024318 -79640035 + L2 LINE L2 3155 3312 -1 204 310 183 31 chr1 163025571 163025800 -79638553 + L2 LINE L2 1715 1978 -1336 609 379 100 2 chr1 163026091 163026590 -79637763 + L2 LINE L2 1969 2516 -798 439 329 5 59 chr1 163026613 163026763 -79637590 - L2 LINE L2 0 3313 3177 2054 172 26 10 chr1 163026763 163027146 -79637207 + MLT1B LTR MaLR 2 390 0 439 329 5 59 chr1 163027146 163027217 -79637136 - L2 LINE L2 -136 3177 3104 * 836 293 206 42 chr1 163027195 163027393 -79636960 - L2 LINE L2 -341 2973 2809 997 214 4 48 chr1 163027393 163027622 -79636731 - MER20 DNA MER1_type 0 219 1 836 293 206 42 chr1 163027622 163028073 -79636280 - L2 LINE L2 -505 2809 2196 353 121 0 0 chr1 163028073 163028131 -79636222 + L1MA2 LINE L1 6247 6304 0 836 293 206 42 chr1 163028131 163028190 -79636163 - L2 LINE L2 -1118 2196 2148 1139 236 114 103 chr1 163029639 163030253 -79634100 + MLT1E2 LTR MaLR 4 626 0 1540 216 11 3 chr1 163030509 163030823 -79633530 + AluJb SINE Alu 1 316 0 1274 242 28 3 chr1 163030958 163031280 -79633073 + MLT1I LTR MaLR 80 409 0 228 260 98 32 chr1 163031491 163031614 -79632739 - MLT1J2 LTR MaLR -41 409 279 308 296 35 0 chr1 163031715 163031830 -79632523 - MLT1J1 LTR MaLR -311 135 17 834 272 35 0 chr1 163032339 163032567 -79631786 + MLT1I LTR MaLR 149 384 -25 23 0 0 0 chr1 163032761 163032784 -79631569 + AT_rich Low_complexity Low_complexity 1 23 0 200 246 0 66 chr1 163033980 163034041 -79630312 + MER5B DNA MER1_type 19 75 -103 * 225 270 34 79 chr1 163033996 163034085 -79630268 - MER5A DNA MER1_type -31 158 74 313 305 85 40 chr1 163034195 163034372 -79629981 - L3 LINE CR1 -137 1440 1256 384 300 68 65 chr1 163034994 163035331 -79629022 + MARNA DNA Mariner 71 408 -178 276 130 0 0 chr1 163036125 163036171 -79628182 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr1 163036306 163036327 -79628026 + AT_rich Low_complexity Low_complexity 1 21 0 369 297 115 26 chr1 163037346 163037538 -79626815 + L2 LINE L2 3104 3312 -1 2297 304 138 24 chr1 163037797 163039072 -79625281 + L2 LINE L2 157 1576 -1738 270 294 80 37 chr1 163039487 163039674 -79624679 - L2 LINE L2 0 3313 3119 220 360 136 22 chr1 163039713 163039941 -79624412 - L2 LINE L2 -376 2938 2685 544 65 0 0 chr1 163040607 163040684 -79623669 - L1PA3 LINE L1 0 6155 6079 6674 29 1 0 chr1 163040684 163041816 -79622537 + L1PA4 LINE L1 4942 6074 -81 590 291 44 11 chr1 163042139 163042321 -79622032 - MIR SINE MIR -21 241 54 310 204 10 31 chr1 163042753 163042851 -79621502 - Charlie2 DNA MER1_type -351 2511 2416 624 172 26 0 chr1 163042941 163043057 -79621296 - Tigger1 DNA MER2_type 0 2418 2300 360 157 405 0 chr1 163043059 163043148 -79621205 + FLAM_A SINE Alu 1 125 -8 * 13278 132 35 3 chr1 163043145 163045385 -79618968 - Tigger1 DNA MER2_type -106 2312 1 1152 246 45 16 chr1 163045405 163045787 -79618566 - Charlie2 DNA MER1_type -614 2248 1856 564 208 49 14 chr1 163045791 163045935 -79618418 - Charlie2 DNA MER1_type -2459 323 175 330 300 27 0 chr1 163046029 163046139 -79618214 - Charlie2 DNA MER1_type -2749 113 1 974 272 58 4 chr1 163046366 163046609 -79617744 - MIR SINE MIR 0 262 7 1012 330 97 37 chr1 163047895 163048054 -79616299 + L3 LINE CR1 927 1075 -502 2274 102 0 0 chr1 163048054 163048347 -79616006 - AluSx SINE Alu -19 293 1 1012 330 97 37 chr1 163048347 163048783 -79615570 + L3 LINE CR1 1075 1558 -19 3840 95 26 0 chr1 163049156 163049422 -79614931 + L1PB1 LINE L1 5513 5771 -380 360 0 0 0 chr1 163049422 163049462 -79614891 + (CA)n Simple_repeat Simple_repeat 2 41 0 3840 95 26 0 chr1 163049462 163049775 -79614578 + L1PB1 LINE L1 5771 6107 -44 27 49 0 0 chr1 163049933 163049974 -79614379 + AT_rich Low_complexity Low_complexity 1 41 0 787 282 80 68 chr1 163050020 163050174 -79614179 - L2 LINE L2 -4 3309 3158 342 0 0 0 chr1 163050174 163050212 -79614141 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 787 282 80 68 chr1 163050212 163050748 -79613605 - L2 LINE L2 -155 3158 2617 812 190 103 17 chr1 163051328 163051502 -79612851 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr1 163052027 163052055 -79612298 + AT_rich Low_complexity Low_complexity 1 28 0 2117 81 27 14 chr1 163052175 163052470 -79611883 + AluY SINE Alu 1 299 -12 2333 181 35 29 chr1 163053680 163054231 -79610122 - L1MB7 LINE L1 -30 6154 5601 262 234 62 0 chr1 163054687 163054751 -79609602 + (CATG)n Simple_repeat Simple_repeat 3 70 0 906 217 23 20 chr1 163054752 163055163 -79609190 - MLT2B1 LTR ERVL -42 422 1 1818 138 22 0 chr1 163055645 163055956 -79608397 + L1MA8 LINE L1 5963 6280 -11 22 0 0 0 chr1 163056120 163056142 -79608211 + AT_rich Low_complexity Low_complexity 1 22 0 1903 148 3 24 chr1 163056142 163056440 -79607913 - AluSx SINE Alu -20 292 1 358 307 106 21 chr1 163056444 163056633 -79607720 - MIR SINE MIR -56 206 2 202 327 58 0 chr1 163056840 163056944 -79607409 + MIR SINE MIR 97 206 -56 1250 254 109 5 chr1 163058073 163058487 -79605866 - LTR16A1 LTR ERVL 0 457 1 231 88 0 0 chr1 163058527 163058561 -79605792 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 386 280 97 11 chr1 163059028 163059203 -79605150 - Charlie8 DNA MER1_type -2171 246 57 232 400 82 0 chr1 163059250 163059385 -79604968 + L2 LINE L2 3124 3269 -3 1868 145 38 0 chr1 163059547 163059837 -79604516 + AluJb SINE Alu 9 309 -3 306 50 0 0 chr1 163060852 163060892 -79603461 + (AGATG)n Simple_repeat Simple_repeat 3 42 0 2779 257 157 33 chr1 163061010 163061258 -79603095 + Charlie8 DNA MER1_type 455 671 -1746 1373 213 29 47 chr1 163061258 163061639 -79602714 - MLT1A2 LTR MaLR 0 374 1 2779 257 157 33 chr1 163061639 163061852 -79602501 + Charlie8 DNA MER1_type 671 856 -1561 1982 124 66 30 chr1 163061852 163062214 -79602139 + THE1C LTR MaLR 1 375 0 2779 257 157 33 chr1 163062214 163063222 -79601131 + Charlie8 DNA MER1_type 856 2108 -309 189 107 0 0 chr1 163064973 163065001 -79599352 + (CCTA)n Simple_repeat Simple_repeat 4 31 0 290 0 0 70 chr1 163065859 163065902 -79598451 + (TC)n Simple_repeat Simple_repeat 2 41 0 215 324 15 0 chr1 163067580 163067648 -79596705 + MIR3 SINE MIR 91 159 -49 185 118 59 0 chr1 163067856 163067890 -79596463 + MIR3 SINE MIR 162 197 -11 2522 63 0 0 chr1 163068810 163069113 -79595240 + AluY SINE Alu 1 303 -8 494 258 32 0 chr1 163069584 163069708 -79594645 - MLT1G1 LTR MaLR -17 578 451 2339 248 69 65 chr1 163069759 163070559 -79593794 + MER21B LTR ERV1 1 803 -60 748 235 88 26 chr1 163070601 163070923 -79593430 - MLT1G1 LTR MaLR -210 385 1 1404 324 40 0 chr1 163070954 163071401 -79592952 - L2 LINE L2 -2787 527 63 819 301 84 38 chr1 163071499 163072081 -79592272 + L1ME3A LINE L1 5258 5866 -304 747 247 118 0 chr1 163072144 163072330 -79592023 + MIR SINE MIR 55 262 0 442 309 62 37 chr1 163073819 163073981 -79590372 - MIR SINE MIR -89 173 8 2090 158 17 3 chr1 163074550 163074910 -79589443 + MLT1A1 LTR MaLR 1 365 0 286 367 129 16 chr1 163074985 163075364 -79588989 - L2 LINE L2 -473 2841 2420 265 322 43 9 chr1 163075780 163075895 -79588458 - L2 LINE L2 -1085 2229 2111 184 308 33 44 chr1 163075983 163076074 -79588279 - L2 LINE L2 -1416 1898 1809 409 296 67 69 chr1 163076104 163076465 -79587888 - L2 LINE L2 -1619 1695 1336 1066 162 0 6 chr1 163076471 163076638 -79587715 + FRAM SINE Alu 1 162 -14 184 269 0 0 chr1 163077389 163077441 -79586912 + MER5C DNA MER1_type 262 313 -11 2198 104 0 36 chr1 163077523 163077830 -79586523 - AluSx SINE Alu -16 296 1 6343 77 10 10 chr1 163079864 163081571 -79582782 - L1PA8 LINE L1 -4 6168 4447 343 129 16 0 chr1 163081897 163081959 -79582394 + L1MB4 LINE L1 6115 6177 -3 6141 98 9 7 chr1 163082112 163083007 -79581346 + L1PA11 LINE L1 5278 6174 0 601 312 55 0 chr1 163083708 163083907 -79580446 + MIR SINE MIR 49 258 -4 679 242 20 131 chr1 163084284 163084557 -79579796 + L2 LINE L2 3001 3228 -85 2479 69 0 0 chr1 163084557 163084863 -79579490 - AluY SINE Alu -5 306 1 679 242 20 131 chr1 163084863 163084940 -79579413 + L2 LINE L2 3228 3312 -1 214 213 0 33 chr1 163084941 163085002 -79579351 + (TGAA)n Simple_repeat Simple_repeat 2 60 0 225 0 0 0 chr1 163085270 163085295 -79579058 + (A)n Simple_repeat Simple_repeat 1 25 0 211 316 112 10 chr1 163086462 163086560 -79577793 + L2 LINE L2 2929 3036 -236 275 302 44 127 chr1 163086655 163086907 -79577446 - L2 LINE L2 -19 3253 3023 209 302 19 0 chr1 163086912 163086965 -79577388 + L2 LINE L2 3133 3186 -86 189 0 0 0 chr1 163087074 163087095 -79577258 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 307 272 33 78 chr1 163087389 163087569 -79576784 + L1MC4 LINE L1 7694 7865 -177 28 29 0 0 chr1 163087596 163087631 -79576722 + AT_rich Low_complexity Low_complexity 1 35 0 323 341 85 29 chr1 163089642 163089900 -79574453 - HAL1b LINE L1 -772 645 435 306 106 0 0 chr1 163090437 163090484 -79573869 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 518 315 29 51 chr1 163090680 163091069 -79573284 - L2 LINE L2 -189 3083 2704 206 260 14 82 chr1 163091451 163091524 -79572829 + MER5A DNA MER1_type 91 158 -31 * 224 250 19 0 chr1 163091476 163091528 -79572825 - MER5A DNA MER1_type -98 91 39 2215 66 0 50 chr1 163092639 163092970 -79571383 + AluY SINE Alu 1 316 0 212 321 0 0 chr1 163093208 163093261 -79571092 + MIR3 SINE MIR 144 196 -12 29 0 0 0 chr1 163093339 163093368 -79570985 + AT_rich Low_complexity Low_complexity 1 29 0 2576 84 0 67 chr1 163093375 163093792 -79570561 - L1PA8 LINE L1 -1 6171 5783 1580 205 75 117 chr1 163093796 163094410 -79569943 - L1ME3 LINE L1 -13 6149 5562 656 299 15 42 chr1 163094520 163094784 -79569569 + L2 LINE L2 3057 3313 0 279 0 0 0 chr1 163095362 163095393 -79568960 + (A)n Simple_repeat Simple_repeat 1 31 0 234 250 17 17 chr1 163095986 163096046 -79568307 + L2 LINE L2 3212 3271 -1 2143 175 42 0 chr1 163097043 163097421 -79566932 + MLT2D LTR ERVL 1 394 -20 278 43 0 186 chr1 163097446 163097516 -79566837 + MLT2D LTR ERVL 358 414 0 332 238 222 0 chr1 163097789 163097915 -79566438 - MIR SINE MIR -17 245 92 262 295 36 48 chr1 163098143 163098309 -79566044 + L2 LINE L2 2240 2403 -911 187 363 44 0 chr1 163098315 163098406 -79565947 + L2 LINE L2 2539 2633 -681 932 198 0 34 chr1 163098408 163098585 -79565768 - MER2 DNA MER2_type -174 171 1 285 181 43 35 chr1 163098594 163098753 -79565600 + (TTATA)n Simple_repeat Simple_repeat 1 160 0 607 288 75 29 chr1 163099069 163099651 -79564702 - L1ME3 LINE L1 -290 5872 5265 24 32 0 0 chr1 163099860 163099891 -79564462 + AT_rich Low_complexity Low_complexity 1 31 0 42496 35 22 2 chr1 163099927 163105954 -79558399 - L1PA2 LINE L1 -4 6151 2 7869 23 0 0 chr1 163105981 163106898 -79557455 - L1P LINE L1 -1512 4634 3718 7735 21 0 0 chr1 163106898 163108452 -79555901 + L1PA3 LINE L1 4596 6154 -1 180 0 0 0 chr1 163108459 163108479 -79555874 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 404 367 60 6 chr1 163108479 163108751 -79555602 - L1ME3 LINE L1 -1053 5093 4809 361 297 6 12 chr1 163108853 163109018 -79555335 - L1ME3 LINE L1 -1496 4650 4487 364 383 6 0 chr1 163109275 163109437 -79554916 - L1ME3 LINE L1 -1947 4199 4037 619 206 23 0 chr1 163110095 163110226 -79554127 + MER67D LTR ERV1 1 134 -380 1053 131 17 17 chr1 163110398 163110573 -79553780 + MER67C LTR ERV1 229 403 -307 729 214 121 10 chr1 163110551 163110757 -79553596 + MER67D LTR ERV1 282 510 -4 * 225 0 0 0 chr1 163111190 163111215 -79553138 + (A)n Simple_repeat Simple_repeat 1 25 0 250 365 9 28 chr1 163111504 163111611 -79552742 + L2 LINE L2 3203 3307 -6 190 394 24 16 chr1 163113820 163113947 -79550406 + L2 LINE L2 2842 2969 -303 2142 133 39 33 chr1 163114381 163114743 -79549610 + THE1B LTR MaLR 1 364 0 11755 89 6 9 chr1 163114743 163116328 -79548025 + THE1B-int LTR MaLR 1 1580 0 2009 126 40 67 chr1 163116328 163116700 -79547653 + THE1B LTR MaLR 1 362 -2 10390 187 44 6 chr1 163118458 163121330 -79543023 - L1 LINE L1 -1090 6475 3257 1933 145 52 0 chr1 163121330 163121619 -79542734 - AluSx SINE Alu -6 306 3 10390 187 44 6 chr1 163121619 163121879 -79542474 - L1 LINE L1 -4308 3257 3008 707 192 0 0 chr1 163121880 163122000 -79542353 + AluSq/x SINE Alu 1 120 -193 638 144 9 18 chr1 163121998 163122109 -79542244 + AluJb SINE Alu 199 308 -4 * 3692 105 53 13 chr1 163122110 163122736 -79541617 - L1 LINE L1 -4547 3018 2368 3577 195 88 54 chr1 163122721 163124077 -79540276 - L1 LINE L1 -5430 2135 23 * 9279 207 49 32 chr1 163124086 163127205 -79537148 - L1 LINE L1 -1832 5733 2542 1736 227 18 10 chr1 163127183 163127775 -79536578 - L1M3c LINE L1 -4681 2356 1749 * 610 312 158 0 chr1 163128007 163128228 -79536125 + MIR SINE MIR 3 258 -4 1809 181 0 19 chr1 163129186 163129500 -79534853 + AluJb SINE Alu 1 308 -4 242 309 9 64 chr1 163129777 163129887 -79534466 - MIR SINE MIR -50 212 109 389 356 37 32 chr1 163130083 163130421 -79533932 - L2 LINE L2 -194 3078 2742 1045 238 120 50 chr1 163131396 163131549 -79532804 + MLT1A1 LTR MaLR 1 142 -223 738 159 7 43 chr1 163131549 163131687 -79532666 + FLAM_C SINE Alu 1 133 0 1045 238 120 50 chr1 163131687 163131874 -79532479 + MLT1A1 LTR MaLR 142 365 0 1737 227 52 0 chr1 163131918 163132283 -79532070 + MLT1A1-int LTR MaLR 27 410 -1325 1463 254 43 2 chr1 163132284 163132667 -79531686 + MLT1A1-int LTR MaLR 1217 1651 0 837 237 99 6 chr1 163132667 163132974 -79531379 + MSTD LTR MaLR 1 395 -1 568 335 120 22 chr1 163133423 163133781 -79530572 + L3 LINE CR1 692 1084 -493 419 292 50 17 chr1 163133812 163134013 -79530340 - MIR SINE MIR -11 251 43 344 280 40 24 chr1 163134040 163134165 -79530188 + L3 LINE CR1 1200 1326 -251 246 299 13 13 chr1 163134701 163134778 -79529575 + MIR SINE MIR 20 96 -112 244 324 28 48 chr1 163134831 163134976 -79529377 + MIR SINE MIR 12 153 -109 196 365 16 0 chr1 163135594 163135648 -79528705 - L2 LINE L2 -86 3186 3129 2394 92 0 0 chr1 163135648 163135954 -79528399 + AluSq SINE Alu 1 306 -7 707 286 129 0 chr1 163136352 163136569 -79527784 + MIR SINE MIR 15 259 -3 247 200 0 0 chr1 163137868 163137913 -79526440 + MIR SINE MIR 103 147 -115 211 325 87 40 chr1 163137971 163138097 -79526256 + L2 LINE L2 3136 3267 -5 2453 63 0 20 chr1 163138473 163138776 -79525577 - AluY SINE Alu -14 297 1 653 307 26 4 chr1 163138777 163139005 -79525348 - MIR SINE MIR -16 246 14 524 295 113 68 chr1 163139565 163140327 -79524026 + L2 LINE L2 1710 2505 -809 2655 172 84 27 chr1 163140492 163140536 -79523817 - MLT2B3 LTR ERVL 0 554 514 533 15 15 0 chr1 163140536 163140602 -79523751 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 2655 172 84 27 chr1 163140602 163141081 -79523272 - MLT2B3 LTR ERVL -40 514 1 11106 150 75 29 chr1 163141081 163141779 -79522574 - ERVL-B3 LTR ERVL -7 5757 5092 2353 91 0 22 chr1 163141779 163142097 -79522256 - AluY SINE Alu 0 311 1 11106 150 75 29 chr1 163142097 163143412 -79520941 - ERVL-B3 LTR ERVL -672 5092 3653 578 146 0 10 chr1 163143413 163143509 -79520844 - MLT2B1 LTR ERVL -425 95 1 2239 144 5 24 chr1 163143849 163143867 -79520486 - L1PA15 LINE L1 0 6165 6148 2439 125 94 3 chr1 163143867 163144259 -79520094 - MSTA LTR MaLR 0 428 1 2239 144 5 24 chr1 163144259 163144621 -79519732 - L1PA15 LINE L1 -17 6148 5792 9764 192 24 20 chr1 163144626 163146126 -79518227 - L1PA15 LINE L1 -600 5565 4064 2086 148 21 32 chr1 163146126 163146505 -79517848 + THE1C LTR MaLR 1 375 0 9764 192 24 20 chr1 163146505 163147415 -79516938 - L1PA15 LINE L1 -2101 4064 3159 443 118 13 0 chr1 163147435 163147511 -79516842 + (TA)n Simple_repeat Simple_repeat 1 77 0 307 268 78 49 chr1 163147556 163147698 -79516655 - L2 LINE L2 -1 3312 3167 21 0 0 0 chr1 163147844 163147865 -79516488 + AT_rich Low_complexity Low_complexity 1 21 0 209 265 145 12 chr1 163147867 163147950 -79516403 - L2 LINE L2 0 3313 3220 * 259 330 0 29 chr1 163147947 163148050 -79516303 - MIR SINE MIR -133 129 30 * 949 268 173 22 chr1 163148048 163148418 -79515935 - L2 LINE L2 -664 2650 2225 343 339 20 51 chr1 163148723 163148918 -79515435 - MER5A DNA MER1_type 0 189 1 29857 105 7 17 chr1 163148924 163151470 -79512883 + L1PA7 LINE L1 769 3340 -2814 2199 102 3 3 chr1 163151470 163151764 -79512589 + AluY SINE Alu 1 294 -17 29857 105 7 17 chr1 163151764 163154537 -79509816 + L1PA7 LINE L1 3340 6030 -124 23 33 0 0 chr1 163155580 163155610 -79508743 + AT_rich Low_complexity Low_complexity 1 30 0 1927 110 4 4 chr1 163155694 163155966 -79508387 - AluSc SINE Alu -5 304 33 1863 136 46 0 chr1 163156490 163156770 -79507583 + AluSx SINE Alu 4 296 -16 470 126 232 0 chr1 163158131 163158226 -79506127 + MER63 DNA MER1_type 1 743 -93 328 316 0 0 chr1 163158219 163158314 -79506039 + MER63 DNA MER1_type 961 1055 -5 * 333 118 0 0 chr1 163158363 163158414 -79505939 + (CA)n Simple_repeat Simple_repeat 2 52 0 766 301 35 21 chr1 163160772 163161054 -79503299 + L2 LINE L2 3026 3311 -2 271 347 8 33 chr1 163162374 163162495 -79501858 + L2 LINE L2 3195 3312 -1 491 283 75 16 chr1 163162956 163163143 -79501210 + Charlie7 DNA MER1_type 27 224 -2388 570 269 42 10 chr1 163163189 163163382 -79500971 + Charlie7 DNA MER1_type 1428 1626 -986 4606 267 103 24 chr1 163163384 163164281 -79500072 - L2 LINE L2 -616 2698 1874 261 0 0 0 chr1 163164281 163164310 -79500043 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4606 267 103 24 chr1 163164310 163164988 -79499365 - L2 LINE L2 -1440 1874 997 614 264 83 55 chr1 163164992 163165485 -79498868 + Charlie7 DNA MER1_type 2105 2611 -1 1877 155 0 10 chr1 163165521 163165843 -79498510 - AluJb SINE Alu 0 312 1 407 197 109 82 chr1 163165934 163166081 -79498272 + MIR SINE MIR 109 259 -3 551 273 150 9 chr1 163166632 163166852 -79497501 - MIR SINE MIR -2 260 10 452 300 37 63 chr1 163168759 163168949 -79495404 - MIR3 SINE MIR -10 198 14 400 158 0 0 chr1 163170060 163170136 -79494217 + L1MA9 LINE L1 6237 6312 0 475 262 36 42 chr1 163170476 163170644 -79493709 + MIR SINE MIR 25 191 -71 205 343 38 38 chr1 163170890 163170995 -79493358 - MIR3 SINE MIR -54 154 50 1708 61 5 5 chr1 163171924 163172136 -79492217 + AluSc SINE Alu 87 298 -11 227 211 14 42 chr1 163173309 163173380 -79490973 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 411 21 0 0 chr1 163173791 163173839 -79490514 + (TG)n Simple_repeat Simple_repeat 1 48 0 207 330 125 0 chr1 163174530 163174618 -79489735 - L2 LINE L2 -5 3267 3169 198 103 0 0 chr1 163174872 163174901 -79489452 + (TATG)n Simple_repeat Simple_repeat 4 32 0 180 200 53 93 chr1 163175472 163175547 -79488806 + L2 LINE L2 789 860 -2454 580 293 74 44 chr1 163175595 163175824 -79488529 - MIR SINE MIR -6 256 21 210 356 23 23 chr1 163177025 163177112 -79487241 + MIR SINE MIR 17 103 -105 303 28 0 0 chr1 163177325 163177361 -79486992 + (CA)n Simple_repeat Simple_repeat 1 36 0 182 277 169 12 chr1 163177527 163177610 -79486743 - MIR3 SINE MIR -2 206 111 23 78 0 0 chr1 163178067 163178118 -79486235 + AT_rich Low_complexity Low_complexity 1 51 0 1114 225 68 47 chr1 163178448 163178951 -79485402 - MLT1E2 LTR MaLR 0 505 3 247 284 90 8 chr1 163179529 163179663 -79484690 - L1ME4a LINE L1 -195 5926 5782 435 68 0 0 chr1 163180526 163180585 -79483768 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 195 229 250 31 chr1 163181403 163181499 -79482854 + L2 LINE L2 3197 3313 0 22 35 0 0 chr1 163181535 163181564 -79482789 + AT_rich Low_complexity Low_complexity 1 29 0 314 369 65 9 chr1 163182289 163182506 -79481847 + L2 LINE L2 1915 2143 -1171 317 298 60 89 chr1 163182544 163182913 -79481440 + L1 LINE L1 1599 1956 -5530 2629 195 114 102 chr1 163183171 163184080 -79480273 + L1M4c LINE L1 617 1604 -4780 5881 105 10 8 chr1 163184080 163185658 -79478695 + L1PA14 LINE L1 4579 6160 -1 2629 195 114 102 chr1 163185658 163186319 -79478034 + L1M4c LINE L1 1604 2255 -4129 276 242 67 58 chr1 163186709 163186829 -79477524 + LTR45B LTR ERV1 351 471 -18 2117 229 25 8 chr1 163186841 163187605 -79476748 + L1 LINE L1 3403 4179 -3386 29360 37 4 2 chr1 163187754 163192285 -79472068 - L1PA4 LINE L1 0 6155 1616 272 121 61 0 chr1 163192339 163192405 -79471948 + L1 LINE L1 4268 4337 -3228 * 731 203 5 35 chr1 163192402 163192599 -79471754 + L1 LINE L1 6093 6283 -1282 18597 68 1 0 chr1 163192599 163195096 -79469257 + L1P LINE L1 3 2501 -3645 2304 66 0 28 chr1 163195096 163195406 -79468947 + L1PA4 LINE L1 5846 6155 0 568 215 76 6 chr1 163195433 163195605 -79468748 + L1 LINE L1 6304 6487 -1078 1400 285 11 0 chr1 163195608 163195955 -79468398 + L1PA13 LINE L1 1 351 -6436 611 297 41 15 chr1 163195953 163196148 -79468205 + L1PA13 LINE L1 863 1062 -5725 * 1508 141 13 4 chr1 163196195 163196429 -79467924 + AluSg/x SINE Alu 72 307 -3 3011 130 12 0 chr1 163196431 163196916 -79467437 + L1PA14 LINE L1 5482 5972 -189 306 246 64 30 chr1 163197236 163197378 -79466975 - L1MEd LINE L1 -4852 1277 1140 267 263 68 25 chr1 163198285 163198403 -79465950 + L2 LINE L2 2658 2780 -534 224 217 0 0 chr1 163198576 163198622 -79465731 + GA-rich Low_complexity Low_complexity 1 46 0 3490 137 38 46 chr1 163198648 163199481 -79464872 - MER4D LTR ERV1 -11 835 1 2949 109 7 0 chr1 163199567 163199987 -79464366 + L1PA7 LINE L1 11 433 -6028 13305 86 23 5 chr1 163199990 163202664 -79461689 + L1PA7 LINE L1 3792 6482 0 442 234 156 21 chr1 163203267 163203459 -79460894 + Charlie2 DNA MER1_type 5 222 -2640 734 233 112 0 chr1 163203636 163203842 -79460511 + LTR48B LTR ERV1 1 229 -415 1274 217 19 64 chr1 163203852 163204226 -79460127 - MER4D LTR ERV1 -3 900 544 622 215 76 13 chr1 163204230 163204388 -79459965 - MER4E LTR ERV1 -611 168 1 1307 140 42 38 chr1 163204499 163204800 -79459553 + LTR29 LTR ERV1 330 595 0 280 130 19 0 chr1 163204800 163204854 -79459499 + Charlie2 DNA MER1_type 2743 2797 -65 1915 177 120 22 chr1 163204865 163205170 -79459183 - Tigger6 DNA MER2_type -4 1593 1221 4667 131 50 45 chr1 163205170 163206068 -79458285 + MER4D LTR ERV1 1 903 0 1915 177 120 22 chr1 163206068 163206253 -79458100 - Tigger6 DNA MER2_type -376 1221 1055 203 263 263 11 chr1 163206443 163206538 -79457815 - MIR3 SINE MIR -46 162 44 2262 126 72 21 chr1 163207084 163207512 -79456841 - LTR7 LTR ERV1 0 450 1 3452 102 14 18 chr1 163207512 163208071 -79456282 - HERVH LTR ERV1 0 7713 7157 272 184 0 0 chr1 163208064 163208113 -79456240 - HERVH LTR ERV1 -1697 6016 5968 * 408 270 128 20 chr1 163209623 163209771 -79454582 - MIR SINE MIR -41 221 58 583 278 176 19 chr1 163209822 163210038 -79454315 + MIR SINE MIR 13 262 0 612 193 52 16 chr1 163210133 163210325 -79454028 - MER69 DNA AcHobo -221 2305 2107 2079 87 0 11 chr1 163210329 163210661 -79453692 - AluY SINE Alu 0 329 1 334 266 11 32 chr1 163211163 163211257 -79453096 + MER115 DNA AcHobo 217 308 -385 596 244 30 0 chr1 163211302 163211466 -79452887 + MER115 DNA AcHobo 525 693 0 1671 209 3 16 chr1 163212262 163212646 -79451707 + AluJo SINE Alu 2 381 0 541 252 8 0 chr1 163212986 163213109 -79451244 - MIR SINE MIR 0 262 139 1147 212 68 58 chr1 163213129 163213599 -79450754 + MER39 LTR ERV1 1 687 -20 511 284 50 21 chr1 163213615 163213756 -79450597 - MIR SINE MIR -117 145 1 1118 314 140 15 chr1 163214148 163214957 -79449396 + L3 LINE CR1 667 1576 -1 1680 185 59 8 chr1 163215062 163215418 -79448935 - MLT1A2 LTR MaLR 0 374 1 696 303 133 18 chr1 163215503 163215948 -79448405 + MLT1D LTR MaLR 1 496 -9 419 52 17 0 chr1 163216474 163216532 -79447821 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 669 307 102 8 chr1 163216539 163216793 -79447560 + MER115 DNA AcHobo 101 378 -315 472 228 9 0 chr1 163216846 163216960 -79447393 + MER115 DNA AcHobo 571 685 -8 392 371 25 5 chr1 163218201 163218403 -79445950 + L2 LINE L2 2661 2866 -448 244 357 41 0 chr1 163218543 163218714 -79445639 - L1ME3A LINE L1 -5 6165 5988 25 31 0 0 chr1 163218887 163218919 -79445434 + AT_rich Low_complexity Low_complexity 1 32 0 2025 132 0 3 chr1 163218979 163219267 -79445086 + AluSg SINE Alu 1 287 -23 260 326 11 11 chr1 163219819 163219914 -79444439 + L3 LINE CR1 1469 1563 -14 185 222 67 0 chr1 163220404 163220449 -79443904 + L2 LINE L2 3265 3312 -1 295 332 92 55 chr1 163220511 163220803 -79443550 - L2 LINE L2 -25 3247 2945 6373 236 62 56 chr1 163222161 163222306 -79442047 + L1M4 LINE L1 55 198 -6446 2365 103 0 0 chr1 163222306 163222607 -79441746 + AluSq SINE Alu 1 301 -12 6373 236 62 56 chr1 163222607 163223052 -79441301 + L1M4 LINE L1 198 639 -6005 324 119 0 0 chr1 163223052 163223111 -79441242 + (TG)n Simple_repeat Simple_repeat 1 59 0 6373 236 62 56 chr1 163223111 163223386 -79440967 + L1M4 LINE L1 639 911 -5733 2226 184 60 0 chr1 163223386 163223821 -79440532 + LOR1b LTR ERV1 1 461 0 6373 236 62 56 chr1 163223821 163227892 -79436461 + L1M4 LINE L1 911 5093 -1551 4131 133 25 82 chr1 163227895 163228727 -79435626 + LTR1 LTR ERV1 1 785 0 356 200 59 0 chr1 163228727 163228812 -79435541 + HUERS-P2 LTR ERV1 1 90 -2998 237 111 0 0 chr1 163228814 163228850 -79435503 + L1MB7 LINE L1 5740 5775 -409 302 206 14 14 chr1 163228855 163228928 -79435425 + LTR54 LTR ERV1 1 73 -437 339 253 49 31 chr1 163228993 163229093 -79435260 + MER57A LTR ERV1 239 345 -58 215 59 0 29 chr1 163229093 163229127 -79435226 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 339 253 49 31 chr1 163229127 163229188 -79435165 + MER57A LTR ERV1 345 403 0 1672 166 84 5 chr1 163229190 163229557 -79434796 + L1MB7 LINE L1 5780 6175 -9 278 276 0 10 chr1 163230024 163230122 -79434231 - MER103 DNA DNA 0 166 70 612 250 0 0 chr1 163230122 163230246 -79434107 - L2 LINE L2 -1 3312 3189 699 114 15 38 chr1 163231177 163231309 -79433044 - L1MB4 LINE L1 -7 6173 6045 2441 96 3 0 chr1 163231896 163232208 -79432145 + AluSp SINE Alu 1 313 0 256 270 180 10 chr1 163232772 163232872 -79431481 + L2 LINE L2 3186 3302 -11 929 198 15 50 chr1 163232981 163233183 -79431170 + AluJo SINE Alu 1 195 -117 204 111 22 44 chr1 163233183 163233228 -79431125 + GA-rich Low_complexity Low_complexity 3 46 0 550 167 17 17 chr1 163233950 163234070 -79430283 - L1PA15 LINE L1 -1 6164 6045 2663 45 0 0 chr1 163234128 163234439 -79429914 - AluY SINE Alu 0 311 1 31 0 0 0 chr1 163235512 163235543 -79428810 + AT_rich Low_complexity Low_complexity 1 31 0 217 282 169 0 chr1 163235848 163235919 -79428434 - L2 LINE L2 -8 3305 3223 658 250 40 30 chr1 163235932 163236132 -79428221 - MIR SINE MIR -33 229 28 225 211 0 35 chr1 163236854 163236911 -79427442 + CT-rich Low_complexity Low_complexity 2 56 0 222 346 143 25 chr1 163236934 163237249 -79427104 - L2 LINE L2 -693 2621 2270 374 261 36 66 chr1 163239063 163239255 -79425098 + MIR SINE MIR 5 191 -65 689 231 19 140 chr1 163239968 163240232 -79424121 + MIR SINE MIR 3 234 -28 3785 164 10 19 chr1 163240251 163241019 -79423334 - L1PA14 LINE L1 -1656 4490 3730 5949 109 11 15 chr1 163241019 163242751 -79421602 + L1PA14 LINE L1 4462 6159 -2 1606 156 12 8 chr1 163242782 163242891 -79421462 + AluJb SINE Alu 23 130 -182 1937 131 10 24 chr1 163242891 163243188 -79421165 + AluSx SINE Alu 1 293 -19 1606 156 12 8 chr1 163243188 163243335 -79421018 + AluJb SINE Alu 130 280 -32 446 288 218 2 chr1 163243375 163243562 -79420791 + MIR SINE MIR 1 225 -37 181 148 0 0 chr1 163243564 163243591 -79420762 + L2 LINE L2 3215 3241 -31 214 279 29 81 chr1 163243625 163243761 -79420592 + L3b LINE CR1 1317 1445 -138 282 289 77 39 chr1 163243885 163243989 -79420364 - L2 LINE L2 -17 3255 3148 425 339 83 40 chr1 163244122 163244517 -79419836 - L2 LINE L2 -10 3262 2851 829 157 16 43 chr1 163245129 163245282 -79419071 - L1MB3 LINE L1 -7 6176 6027 1276 199 12 109 chr1 163245282 163245684 -79418669 + MLT1A1 LTR MaLR 3 365 0 829 157 16 43 chr1 163245684 163245715 -79418638 - L1MB3 LINE L1 -156 6027 5997 1860 223 76 10 chr1 163245717 163246444 -79417909 - L1MB3 LINE L1 -642 5541 4758 1375 94 0 0 chr1 163246453 163246654 -79417699 - L1MA9 LINE L1 -2 6310 6110 242 170 128 0 chr1 163246654 163246701 -79417652 - Tigger5 DNA MER2_type 0 2323 2271 304 208 0 14 chr1 163246712 163246784 -79417569 - Tigger5 DNA MER2_type -2246 77 7 3837 169 38 40 chr1 163246796 163247531 -79416822 - L1MA9 LINE L1 -202 6110 5366 2205 120 10 0 chr1 163247531 163247839 -79416514 + AluSq SINE Alu 1 311 -2 3837 169 38 40 chr1 163247839 163248164 -79416189 - L1MA9 LINE L1 -946 5366 5042 * 5708 164 33 49 chr1 163248159 163249614 -79414739 - L1PA15 LINE L1 0 6816 5411 2295 77 7 39 chr1 163249614 163249924 -79414429 - AluSq SINE Alu -13 300 1 5708 164 33 49 chr1 163249924 163250648 -79413705 - L1PA15 LINE L1 -1405 5411 4677 * 6350 227 16 7 chr1 163250618 163252327 -79412026 - L1PA15 LINE L1 -2696 4101 2377 1239 304 28 32 chr1 163252398 163252832 -79411521 - L1PA15 LINE L1 -6021 766 335 22 35 0 0 chr1 163252838 163252867 -79411486 + AT_rich Low_complexity Low_complexity 1 29 0 1586 144 22 0 chr1 163252927 163253198 -79411155 - MER4D LTR ERV1 -31 872 596 1705 114 1 32 chr1 163253198 163253483 -79410870 - MER4D LTR ERV1 -413 459 184 931 183 27 5 chr1 163253485 163253671 -79410682 - L1PA13 LINE L1 -1 6162 5973 1475 108 0 0 chr1 163253671 163253857 -79410496 + AluSg/x SINE Alu 109 294 -16 2121 116 32 0 chr1 163253978 163254324 -79410029 - L1MA4 LINE L1 -5 6295 5939 657 242 115 8 chr1 163254374 163254580 -79409773 + MIR SINE MIR 31 256 -6 25 0 0 0 chr1 163254742 163254767 -79409586 + AT_rich Low_complexity Low_complexity 1 25 0 272 220 0 0 chr1 163255184 163255243 -79409110 - U13 snRNA snRNA -45 59 1 330 361 57 0 chr1 163255873 163255995 -79408358 - L2 LINE L2 -3 3269 3141 558 310 156 34 chr1 163256521 163257138 -79407215 - L2 LINE L2 -720 2594 1903 405 300 0 0 chr1 163258011 163258111 -79406242 - L2 LINE L2 0 3313 3214 245 304 50 37 chr1 163258439 163258620 -79405733 + MIR SINE MIR 1 246 -16 325 285 56 45 chr1 163260181 163260360 -79403993 - L1M4 LINE L1 -2091 4055 3875 320 233 0 0 chr1 163260716 163260789 -79403564 + HERVL40 LTR ERVL 5408 5480 -50 916 245 86 50 chr1 163260816 163261199 -79403154 + LTR40a LTR ERVL 1 397 -122 388 185 109 11 chr1 163261639 163261731 -79402622 - MLT1E2 LTR MaLR -414 212 112 267 148 115 0 chr1 163261766 163261827 -79402526 - MLT1E2 LTR MaLR -583 71 4 273 294 196 5 chr1 163261835 163262029 -79402324 + L1MC/D LINE L1 5555 5785 -2023 276 30 0 0 chr1 163262165 163262198 -79402155 + (TG)n Simple_repeat Simple_repeat 1 33 0 310 308 33 0 chr1 163262386 163262506 -79401847 - L1ME4a LINE L1 -15 6106 5983 6740 143 25 4 chr1 163262833 163263971 -79400382 + HSMAR2 DNA Mariner 3 1163 -139 6731 55 5 0 chr1 163263974 163264860 -79399493 - L1PA6 LINE L1 -11 6143 5254 2682 54 0 8 chr1 163264871 163265244 -79399109 + L1PA6 LINE L1 4852 5221 -925 833 149 58 0 chr1 163265244 163265398 -79398955 + HSMAR2 DNA Mariner 1139 1301 -1 586 293 49 0 chr1 163265653 163265817 -79398536 + L2 LINE L2 1154 1325 -1989 1974 286 70 21 chr1 163265818 163266493 -79397860 + L2 LINE L2 2035 2742 -572 2794 170 36 4 chr1 163266498 163267003 -79397350 + Tigger7 DNA MER2_type 1 521 -212 351 169 0 84 chr1 163267002 163267085 -79397268 + Tigger7 DNA MER2_type 2400 2475 -16 * 597 244 50 9 chr1 163267418 163267639 -79396714 - L1MDa LINE L1 -3737 2803 2574 2181 249 25 18 chr1 163267647 163268391 -79395962 - L1MDa LINE L1 -4025 2515 1766 663 112 0 0 chr1 163268397 163268504 -79395849 + (TCTCC)n Simple_repeat Simple_repeat 2 108 0 1002 211 70 0 chr1 163268576 163268789 -79395564 + MLT1F LTR MaLR 315 542 0 221 391 93 65 chr1 163269568 163269816 -79394537 - L2 LINE L2 -19 3253 2999 222 370 41 14 chr1 163270368 163270514 -79393839 - L2 LINE L2 -571 2743 2594 1833 244 69 39 chr1 163270911 163271560 -79392793 + Charlie2b DNA MER1_type 1 669 -2113 555 225 104 0 chr1 163271628 163271801 -79392552 + Charlie2a DNA MER1_type 1466 1656 -1206 1567 167 17 53 chr1 163271865 163272165 -79392188 + AluJb SINE Alu 1 289 -23 1279 111 5 10 chr1 163272174 163272373 -79391980 - L1PA13 LINE L1 -5 6158 5961 452 301 57 29 chr1 163272427 163272636 -79391717 + LTR16A LTR ERVL 55 269 -181 1215 199 14 14 chr1 163272640 163272937 -79391416 + Charlie2a DNA MER1_type 1763 2059 -803 20018 172 16 24 chr1 163272953 163273420 -79390933 - L1P3 LINE L1 -1421 5040 4571 2564 59 7 0 chr1 163273420 163273724 -79390629 + AluY SINE Alu 1 306 -5 20018 172 16 24 chr1 163273724 163277748 -79386605 - L1P3 LINE L1 -1890 4571 571 1484 228 19 21 chr1 163277761 163278138 -79386215 - L1P3 LINE L1 -5497 378 3 889 262 42 114 chr1 163278208 163278945 -79385408 + MER77 LTR ERV1 23 597 -8 214 222 0 0 chr1 163279111 163279156 -79385197 - L2 LINE L2 -1080 2234 2190 1622 185 57 38 chr1 163279741 163280108 -79384245 + MLT1A2 LTR MaLR 1 374 0 478 227 67 17 chr1 163281262 163281381 -79382972 + MER5B DNA MER1_type 54 178 0 1090 193 149 30 chr1 163281695 163282131 -79382222 + LTR54B LTR ERV1 9 496 -2 702 273 65 0 chr1 163284543 163284769 -79379584 - MIR SINE MIR -1 261 18 427 262 84 0 chr1 163284829 163284936 -79379417 - L2 LINE L2 -2 3270 3155 1027 175 40 0 chr1 163285201 163285378 -79378975 - MER5A DNA MER1_type -5 184 1 2665 39 0 0 chr1 163285561 163285871 -79378482 + AluY SINE Alu 1 310 -1 559 63 38 0 chr1 163286288 163286367 -79377986 - L1PA12 LINE L1 -1 6167 6086 399 246 44 9 chr1 163286430 163286544 -79377809 - MIR SINE MIR -8 254 137 468 316 69 25 chr1 163286981 163287256 -79377097 + L2 LINE L2 2255 2541 -773 211 382 8 8 chr1 163287544 163287667 -79376686 + L2 LINE L2 2731 2853 -461 378 159 28 28 chr1 163287729 163287836 -79376517 + CT-rich Low_complexity Low_complexity 1 107 0 218 381 138 32 chr1 163287838 163287938 -79376415 + L2 LINE L2 2817 2905 -367 1971 146 10 7 chr1 163287938 163288246 -79376107 - AluY SINE Alu -2 309 1 218 381 138 32 chr1 163288246 163288557 -79375796 + L2 LINE L2 2905 3272 0 21 36 0 0 chr1 163288671 163288699 -79375654 + AT_rich Low_complexity Low_complexity 1 28 0 389 319 60 38 chr1 163288978 163289163 -79375190 - L3 LINE CR1 -8 1569 1381 1347 50 11 0 chr1 163289764 163289943 -79374410 - L1P3 LINE L1 -379 5793 5613 1552 98 44 0 chr1 163289943 163290166 -79374187 + L1PA8 LINE L1 5933 6167 -5 3978 136 40 7 chr1 163290166 163290860 -79373493 + L1MA6 LINE L1 5568 6294 -6 2792 19 0 0 chr1 163291648 163291959 -79372394 - AluYa5 SINE Alu 0 311 1 3282 152 22 24 chr1 163292771 163293368 -79370985 - LTR26 LTR ERV1 -7 596 1 1245 226 132 25 chr1 163293380 163293788 -79370565 - MLT1D LTR MaLR 0 505 54 244 214 155 0 chr1 163294282 163294366 -79369987 + LTR53 LTR ERVL 6 102 -417 1142 231 42 16 chr1 163294475 163294783 -79369570 + LTR53 LTR ERVL 189 504 -15 582 324 50 9 chr1 163295260 163295842 -79368511 + L1ME3A LINE L1 5261 5875 -295 245 109 22 0 chr1 163296148 163296194 -79368159 + GA-rich Low_complexity Low_complexity 3 49 0 2015 160 3 3 chr1 163296264 163296571 -79367782 - AluSx SINE Alu -5 307 1 207 278 120 75 chr1 163297229 163297362 -79366991 - MIR SINE MIR -71 191 53 6006 157 15 6 chr1 163297487 163298919 -79365434 - L1P4 LINE L1 -593 5572 4134 739 118 0 44 chr1 163298953 163299056 -79365297 - L1P4 LINE L1 -2209 3937 3840 2100 160 28 6 chr1 163299056 163299412 -79364941 - THE1B LTR MaLR 0 364 1 739 118 0 44 chr1 163299412 163299444 -79364909 - L1P4 LINE L1 -2306 3840 3808 1798 161 15 15 chr1 163299446 163299787 -79364566 - L1MA5A LINE L1 -270 6027 5687 22 0 0 0 chr1 163300349 163300371 -79363982 + AT_rich Low_complexity Low_complexity 1 22 0 713 171 92 6 chr1 163300402 163300566 -79363787 + L1MB1 LINE L1 5987 6164 -4 450 123 0 0 chr1 163300663 163300728 -79363625 + MER61D LTR ERV1 114 178 -323 1746 170 57 12 chr1 163300797 163301132 -79363221 + MER61D LTR ERV1 152 501 0 7188 45 0 0 chr1 163301369 163302567 -79361786 - L1PA5 LINE L1 -8 6146 4947 4211 85 2 6 chr1 163302771 163303394 -79360959 - L1P LINE L1 -4440 1706 1087 * 8039 44 0 0 chr1 163303392 163304424 -79359929 + L1P LINE L1 3694 4725 -1421 31455 73 4 12 chr1 163304434 163308882 -79355471 - L1PA5 LINE L1 -1734 4412 2 375 262 7 74 chr1 163309918 163310118 -79354235 - MLT1J2 LTR MaLR -236 210 27 204 294 185 33 chr1 163310704 163310796 -79353557 - L2 LINE L2 -4 3268 3163 184 203 156 16 chr1 163310984 163311048 -79353305 + L3 LINE CR1 1167 1239 -338 445 214 14 57 chr1 163311579 163311719 -79352634 + MIR SINE MIR 2 135 -127 615 229 24 149 chr1 163313063 163313312 -79351041 - MIR SINE MIR -44 218 1 551 311 87 10 chr1 163314275 163314481 -79349872 - MIR SINE MIR 0 262 41 400 277 27 0 chr1 163314527 163314639 -79349714 + MIR SINE MIR 78 192 -70 1050 290 74 97 chr1 163314643 163315461 -79348892 + L2 LINE L2 2344 3139 -174 1638 179 80 14 chr1 163315461 163315812 -79348541 - MLT1A2 LTR MaLR 0 374 1 1050 290 74 97 chr1 163315812 163315904 -79348449 + L2 LINE L2 3139 3232 -81 4339 87 53 0 chr1 163316264 163316622 -79347731 - L1PB1 LINE L1 0 6151 5745 252 0 0 0 chr1 163316622 163316650 -79347703 + (TG)n Simple_repeat Simple_repeat 2 29 0 4339 87 53 0 chr1 163316650 163316913 -79347440 - L1PB1 LINE L1 -406 5745 5497 22 0 0 0 chr1 163317601 163317623 -79346730 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 163317702 163317724 -79346629 + AT_rich Low_complexity Low_complexity 1 22 0 449 208 32 19 chr1 163318227 163318271 -79346082 - Charlie5 DNA MER1_type 0 2624 2582 1818 145 25 3 chr1 163318271 163318553 -79345800 + AluJo SINE Alu 1 288 -24 449 208 32 19 chr1 163318553 163318662 -79345691 - Charlie5 DNA MER1_type -42 2582 2469 377 177 0 0 chr1 163318706 163318768 -79345585 + MER63 DNA MER1_type 684 745 -315 219 265 12 72 chr1 163318771 163318854 -79345499 - MIR SINE MIR 0 262 185 217 159 23 0 chr1 163319528 163319572 -79344781 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 21 0 0 0 chr1 163319803 163319824 -79344529 + AT_rich Low_complexity Low_complexity 1 21 0 384 244 12 0 chr1 163320317 163320403 -79343950 - MER5A DNA MER1_type -83 106 20 225 323 42 0 chr1 163320427 163320523 -79343830 - MIR SINE MIR -12 250 151 1430 180 45 58 chr1 163320981 163321358 -79342995 - MLT1A2 LTR MaLR -2 372 1 1438 131 31 0 chr1 163321615 163321837 -79342516 - MER30 DNA MER1_type -1 229 1 789 206 22 17 chr1 163321977 163322157 -79342196 + MIR SINE MIR 3 183 -79 202 226 57 19 chr1 163322153 163322206 -79342147 - L2 LINE L2 -292 2980 2926 * 900 226 23 28 chr1 163322262 163322479 -79341874 - MER20 DNA MER1_type 0 219 4 423 207 26 9 chr1 163322601 163322747 -79341606 + L1ME1 LINE L1 6053 6333 -1 226 94 0 75 chr1 163323411 163323464 -79340889 + (TTTTTA)n Simple_repeat Simple_repeat 4 52 0 1991 94 3 10 chr1 163323490 163323778 -79340575 - L1MA1 LINE L1 -9 6293 6008 313 312 0 71 chr1 163323949 163324001 -79340352 + MER5A DNA MER1_type 47 101 -88 2529 154 24 2 chr1 163324001 163324424 -79339929 + MSTB1 LTR MaLR 1 432 0 313 312 0 71 chr1 163324424 163324525 -79339828 + MER5A DNA MER1_type 101 189 0 250 312 112 40 chr1 163324525 163324633 -79339720 - L3 LINE CR1 -48 1529 1413 206 211 58 19 chr1 163325272 163325324 -79339029 - MER91A DNA MER1_type -11 185 132 379 320 40 16 chr1 163325395 163325520 -79338833 - MER91A DNA MER1_type -24 172 45 232 229 127 119 chr1 163325633 163325877 -79338476 + L2 LINE L2 2683 2928 -386 1718 171 19 23 chr1 163326519 163326829 -79337524 + AluJo SINE Alu 3 311 -1 225 280 30 80 chr1 163327995 163328095 -79336258 + L2 LINE L2 3164 3258 -14 214 286 12 24 chr1 163328400 163328484 -79335869 + MIR SINE MIR 180 262 0 21 0 0 0 chr1 163331173 163331194 -79333159 + AT_rich Low_complexity Low_complexity 1 21 0 351 60 0 0 chr1 163331377 163331427 -79332926 + (TG)n Simple_repeat Simple_repeat 2 51 0 207 125 0 0 chr1 163331429 163331469 -79332884 + (GA)n Simple_repeat Simple_repeat 1 40 0 231 88 0 0 chr1 163331561 163331595 -79332758 + (TGG)n Simple_repeat Simple_repeat 2 35 0 347 303 18 9 chr1 163331983 163332092 -79332261 + MIR3 SINE MIR 98 207 -1 261 289 174 16 chr1 163333013 163333134 -79331219 - MIR3 SINE MIR -5 203 64 224 271 21 0 chr1 163333198 163333246 -79331107 - L2 LINE L2 -23 3290 3242 212 361 8 33 chr1 163333503 163333625 -79330728 - L2 LINE L2 -413 2901 2783 282 160 0 0 chr1 163334224 163334274 -79330079 + (TA)n Simple_repeat Simple_repeat 1 50 0 186 289 184 18 chr1 163334637 163334784 -79329569 + MIR SINE MIR 16 191 -71 221 291 171 34 chr1 163336013 163336130 -79328223 - MIR3 SINE MIR -67 141 9 215 287 0 85 chr1 163336427 163336521 -79327832 + MIR3 SINE MIR 99 184 -24 1639 206 61 30 chr1 163336600 163337041 -79327312 - MLT1C LTR MaLR -6 461 7 379 322 89 48 chr1 163337055 163337201 -79327152 - L2 LINE L2 0 3272 3121 824 108 0 0 chr1 163337551 163337671 -79326682 - L1PA15 LINE L1 -6 6159 6040 843 81 0 0 chr1 163337681 163337792 -79326561 - AluY SINE Alu -10 301 191 272 250 60 0 chr1 163338372 163338456 -79325897 + L1M4 LINE L1 4771 4859 -1287 5056 79 22 21 chr1 163338463 163339182 -79325171 - L1PA11 LINE L1 0 6174 5455 407 287 70 6 chr1 163341259 163341416 -79322937 + MIR SINE MIR 96 262 0 1641 164 47 40 chr1 163341420 163341719 -79322634 - AluJb SINE Alu -11 301 1 278 393 30 22 chr1 163341929 163342064 -79322289 + L2 LINE L2 3125 3260 -12 345 276 33 92 chr1 163342265 163342417 -79321936 + MER5A DNA MER1_type 47 189 0 239 260 14 41 chr1 163342801 163342874 -79321479 + MIR3 SINE MIR 97 167 -41 544 286 31 49 chr1 163343376 163343600 -79320753 - MIR SINE MIR 0 262 43 2518 126 12 5 chr1 163343640 163344060 -79320293 - L1MC1 LINE L1 -223 6110 5688 1786 140 4 0 chr1 163344168 163344425 -79319928 - AluSx SINE Alu -54 258 1 273 305 126 50 chr1 163344426 163344669 -79319684 - MIR SINE MIR -11 251 1 273 313 108 23 chr1 163345359 163345535 -79318818 - MIR3 SINE MIR -9 199 9 1814 129 45 21 chr1 163346105 163346391 -79317962 - AluSx SINE Alu -18 294 2 1695 146 7 47 chr1 163347295 163347618 -79316735 + AluJb SINE Alu 1 312 0 304 231 115 0 chr1 163348006 163348110 -79316243 - MIR SINE MIR -30 232 117 593 96 0 0 chr1 163349247 163349330 -79315023 - Alu SINE Alu -8 303 221 395 317 0 10 chr1 163350040 163350144 -79314209 - MER91B DNA MER1_type 0 190 88 253 229 0 0 chr1 163351472 163351520 -79312833 - L2 LINE L2 -15 3298 3251 264 30 0 0 chr1 163351584 163351617 -79312736 + (TG)n Simple_repeat Simple_repeat 2 34 0 531 304 44 6 chr1 163352024 163352182 -79312171 + MIR3 SINE MIR 2 165 -43 234 339 63 26 chr1 163352998 163353187 -79311166 + L2 LINE L2 1968 2163 -1151 326 269 128 46 chr1 163353190 163353409 -79310944 + Charlie8 DNA MER1_type 1 237 -2180 649 283 60 20 chr1 163353656 163353907 -79310446 - MIR SINE MIR 0 262 2 204 298 64 11 chr1 163353907 163353998 -79310355 + L2 LINE L2 2294 2389 -925 21 36 0 0 chr1 163354326 163354354 -79309999 + AT_rich Low_complexity Low_complexity 1 28 0 187 204 37 93 chr1 163355339 163355393 -79308960 - L2 LINE L2 -12 3260 3210 27 0 0 0 chr1 163355569 163355596 -79308757 + AT_rich Low_complexity Low_complexity 1 27 0 277 323 24 48 chr1 163356252 163356376 -79307977 - L2 LINE L2 -211 3102 2982 775 234 107 86 chr1 163356408 163356840 -79307513 + ERVL-F LTR ERVL 5315 5755 -9 548 302 107 4 chr1 163356841 163357066 -79307287 + MLT2F LTR ERVL 1 248 -415 1690 214 70 33 chr1 163357129 163357611 -79306742 - MLT1D LTR MaLR -2 503 4 308 302 94 16 chr1 163357614 163357717 -79306636 + HAL1b LINE L1 432 526 -822 2214 87 3 16 chr1 163357717 163358026 -79306327 - AluY SINE Alu -6 305 1 308 302 94 16 chr1 163358026 163358114 -79306239 + HAL1b LINE L1 526 638 -710 209 283 33 17 chr1 163358378 163358438 -79305915 + L2 LINE L2 3002 3062 -210 194 246 16 49 chr1 163358571 163358632 -79305721 + L2 LINE L2 3214 3272 0 2540 110 21 0 chr1 163358729 163359101 -79305252 - L1PA15 LINE L1 -17 6148 5769 227 100 25 0 chr1 163359142 163359182 -79305171 - L1MB3 LINE L1 -11 6172 6132 4648 126 4 7 chr1 163359182 163359919 -79304434 - L1PA15 LINE L1 -8 6157 5423 209 265 10 71 chr1 163360905 163361003 -79303350 - L2 LINE L2 0 3272 3181 236 258 108 108 chr1 163361004 163361190 -79303163 + MIR SINE MIR 3 188 -74 1969 117 106 6 chr1 163361552 163361893 -79302460 + THE1C LTR MaLR 1 375 0 5794 113 54 8 chr1 163361893 163362808 -79301545 + THE1C-int LTR MaLR 1 957 -623 1795 129 21 12 chr1 163362804 163363124 -79301229 + THE1C-int LTR MaLR 1299 1580 0 * 2347 131 16 13 chr1 163363124 163363498 -79300855 + THE1C LTR MaLR 1 375 0 2958 264 60 28 chr1 163364394 163366142 -79298211 + L1MA9 LINE L1 274 3205 -3962 511 248 14 0 chr1 163366144 163366285 -79298068 + L1MA9 LINE L1 3629 3771 -3396 5934 119 25 12 chr1 163366292 163367458 -79296895 - L1MA4A LINE L1 -11 6292 5109 * 6954 187 49 11 chr1 163367451 163369103 -79295250 + L1MA9 LINE L1 3752 5340 -1993 1507 114 0 0 chr1 163369103 163369304 -79295049 + AluSg/x SINE Alu 102 302 -8 6954 187 49 11 chr1 163369304 163370957 -79293396 + L1MA9 LINE L1 5340 7245 -88 5032 78 8 1 chr1 163370957 163371613 -79292740 - PABL_A LTR ERV1 0 660 1 6954 187 49 11 chr1 163371613 163371706 -79292647 + L1MA9 LINE L1 7245 7333 0 352 251 262 49 chr1 163371798 163372164 -79292189 + MLT1J1 LTR MaLR 3 446 0 23 33 0 0 chr1 163372431 163372461 -79291892 + AT_rich Low_complexity Low_complexity 1 30 0 668 284 10 36 chr1 163373217 163373411 -79290942 + MIR SINE MIR 1 189 -73 5395 113 30 13 chr1 163373423 163374342 -79290011 + Tigger3b DNA MER2_type 2 936 -295 325 193 0 0 chr1 163374341 163374398 -79289955 + Tigger3b DNA MER2_type 1182 1238 -3 * 292 353 39 39 chr1 163375043 163375247 -79289106 + L2 LINE L2 2555 2758 -556 279 221 221 21 chr1 163375279 163375419 -79288934 + MLT1L LTR MaLR 3 170 -341 2209 124 21 21 chr1 163375732 163376111 -79288242 + MER39B LTR ERV1 1 379 -274 261 119 0 0 chr1 163376111 163376153 -79288200 - MER39B LTR ERV1 -195 458 417 683 145 53 0 chr1 163376164 163376295 -79288058 + MER39B LTR ERV1 512 649 -4 30 0 0 0 chr1 163376326 163376356 -79287997 + AT_rich Low_complexity Low_complexity 1 30 0 41659 41 3 6 chr1 163376414 163382575 -79281778 - L1PA4 LINE L1 -3 6152 16 448 391 72 38 chr1 163382647 163383092 -79281261 + L2 LINE L2 2808 3267 -5 354 80 0 0 chr1 163383094 163383144 -79281209 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 350 321 0 0 chr1 163384023 163384129 -79280224 + L1MC4 LINE L1 6615 6720 -1322 230 227 30 0 chr1 163384094 163384160 -79280193 + (TA)n Simple_repeat Simple_repeat 2 69 0 722 113 113 42 chr1 163384241 163384383 -79279970 - L1MA9 LINE L1 -5 6307 6156 225 356 59 0 chr1 163384941 163385042 -79279311 - MER117 DNA MER1_type -35 162 56 253 294 79 0 chr1 163385334 163385441 -79278912 + MIR SINE MIR 65 142 -66 2577 62 0 0 chr1 163386479 163386784 -79277569 - AluY SINE Alu -6 305 1 243 95 0 0 chr1 163386857 163386899 -79277454 - LTR66 LTR ERVL -171 439 398 * 244 152 0 0 chr1 163386865 163386911 -79277442 + LTR66 LTR ERVL 394 439 -171 201 39 0 0 chr1 163386915 163386941 -79277412 + (TA)n Simple_repeat Simple_repeat 1 26 0 16788 165 38 34 chr1 163387335 163393949 -79270404 + L1PA14 LINE L1 762 7397 -202 2257 88 0 53 chr1 163395921 163396239 -79268114 - AluY SINE Alu -10 301 1 1654 74 14 0 chr1 163396618 163396833 -79267520 + L1PA14 LINE L1 7382 7599 0 442 202 138 0 chr1 163397156 163397265 -79267088 + LTR67 LTR ERVL 432 555 -2 31 0 0 0 chr1 163397535 163397566 -79266787 + AT_rich Low_complexity Low_complexity 1 31 0 3007 75 16 0 chr1 163397566 163397953 -79266400 - L1MA2 LINE L1 0 6304 5912 199 264 0 19 chr1 163398759 163398812 -79265541 - L2 LINE L2 -35 3278 3227 232 287 28 84 chr1 163399975 163400118 -79264235 + MIR SINE MIR 112 246 -16 24 0 0 0 chr1 163400547 163400571 -79263782 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr1 163400962 163400984 -79263369 + (CAGAGA)n Simple_repeat Simple_repeat 3 24 0 4261 129 20 4 chr1 163401469 163402181 -79262172 - L1P LINE L1 -940 5206 4484 1974 88 0 44 chr1 163402350 163402622 -79261731 - AluSg SINE Alu -50 260 1 1346 226 49 27 chr1 163402637 163403045 -79261308 - L1P LINE L1 -1500 4646 4230 662 172 0 26 chr1 163403156 163403272 -79261081 + FRAM SINE Alu 63 175 -1 1731 147 111 6 chr1 163404267 163404600 -79259753 + THE1C LTR MaLR 1 368 -7 550 204 38 32 chr1 163404610 163404767 -79259586 + THE1C-int LTR MaLR 4 161 -1419 1021 145 5 108 chr1 163404917 163405131 -79259222 - MER4D LTR ERV1 -680 192 1 2231 212 5 2 chr1 163405217 163405623 -79258730 + L1P3 LINE L1 11 417 -6044 4889 116 15 4 chr1 163406677 163407394 -79256959 + L1P3 LINE L1 848 1572 -4889 3124 76 9 3 chr1 163407586 163408298 -79256055 + L1P2 LINE L1 5019 5736 -419 638 225 8 0 chr1 163408439 163408568 -79255785 + MIR SINE MIR 105 234 -28 2279 215 13 27 chr1 163408587 163409144 -79255209 - L1P LINE L1 -1656 4490 3942 3474 202 28 1 chr1 163409269 163410008 -79254345 + L1P LINE L1 3928 4686 -1460 6314 114 15 6 chr1 163410516 163411490 -79252863 - L1P LINE L1 -1472 4674 3692 6398 124 6 2 chr1 163411592 163412542 -79251811 - L1P LINE L1 -5191 955 2 1502 202 82 77 chr1 163413951 163414367 -79249986 + L1PA12 LINE L1 762 1179 -6402 27 0 0 0 chr1 163414552 163414579 -79249774 + AT_rich Low_complexity Low_complexity 1 27 0 1148 312 48 43 chr1 163414587 163415049 -79249304 + L1PA12 LINE L1 1125 1588 -5986 1216 247 20 17 chr1 163415091 163415443 -79248910 + L1PA12 LINE L1 3164 3516 -4068 1189 171 0 26 chr1 163415585 163415813 -79248540 - L1P LINE L1 -1346 4800 4579 1940 221 70 37 chr1 163415815 163416577 -79247776 - L1M4c LINE L1 -4775 1609 823 245 109 22 0 chr1 163416981 163417027 -79247326 + GA-rich Low_complexity Low_complexity 3 49 0 1952 159 3 7 chr1 163417097 163417405 -79246948 - AluSx SINE Alu -5 307 1 1700 166 38 0 chr1 163417856 163418146 -79246207 - MSTA LTR MaLR -80 348 48 262 285 75 105 chr1 163418362 163418562 -79245791 + MLT1J LTR MaLR 224 417 -94 544 262 39 81 chr1 163418567 163418949 -79245404 + MER39B LTR ERV1 1 366 -287 2822 57 0 0 chr1 163419070 163419401 -79244952 + L1PA4 LINE L1 5822 6152 -3 31 44 0 0 chr1 163419459 163419504 -79244849 + AT_rich Low_complexity Low_complexity 1 45 0 358 184 27 52 chr1 163419522 163419661 -79244692 - LTR49 LTR ERV1 -4 591 491 1612 42 0 0 chr1 163419885 163420074 -79244279 + AluY SINE Alu 123 311 0 608 167 17 17 chr1 163420132 163420252 -79244101 + L1PA15 LINE L1 6045 6164 -1 23 0 0 0 chr1 163420491 163420514 -79243839 + AT_rich Low_complexity Low_complexity 1 23 0 244 359 31 26 chr1 163421640 163421835 -79242518 - L2 LINE L2 -1151 2163 1968 2474 242 36 12 chr1 163422313 163423147 -79241206 - L1M2c LINE L1 -4516 2203 1399 4144 182 13 8 chr1 163423726 163424435 -79239918 + L1PA12 LINE L1 1186 1897 -5684 254 229 0 0 chr1 163424990 163425038 -79239315 - L2 LINE L2 -15 3298 3251 246 32 0 0 chr1 163425102 163425133 -79239220 + (TG)n Simple_repeat Simple_repeat 2 32 0 1984 126 0 4 chr1 163425749 163426026 -79238327 + AluSg SINE Alu 12 287 -23 213 337 21 21 chr1 163426579 163426674 -79237679 + L3 LINE CR1 1469 1563 -14 199 290 30 80 chr1 163427083 163427183 -79237170 + L2 LINE L2 3164 3258 -14 331 290 75 59 chr1 163429393 163429579 -79234774 + L3 LINE CR1 1381 1569 -8 21 36 0 0 chr1 163429859 163429887 -79234466 + AT_rich Low_complexity Low_complexity 1 28 0 206 283 33 17 chr1 163430080 163430140 -79234213 - L2 LINE L2 -210 3062 3002 390 261 86 4 chr1 163430404 163430492 -79233861 - L1MDa LINE L1 -710 2004 1925 2228 89 3 19 chr1 163430492 163430805 -79233548 + AluY SINE Alu 1 308 -3 390 261 86 4 chr1 163430805 163430897 -79233456 - L1MDa LINE L1 -789 1925 968 1273 240 81 38 chr1 163430906 163431327 -79233026 + MLT1D LTR MaLR 4 442 -63 3992 151 70 14 chr1 163431429 163432118 -79232235 + THE1C-int LTR MaLR 231 957 -623 1809 134 28 15 chr1 163432114 163432433 -79231920 + THE1C-int LTR MaLR 1299 1580 0 * 2427 142 16 13 chr1 163432433 163432807 -79231546 + THE1C LTR MaLR 1 375 0 8276 120 19 8 chr1 163433008 163434905 -79229448 + L1MA4A LINE L1 4075 5989 -314 5749 78 9 9 chr1 163435155 163436068 -79228285 - L1P LINE L1 -3141 3005 2103 2117 95 0 0 chr1 163436260 163436524 -79227829 - AluSq SINE Alu -49 264 1 310 262 37 19 chr1 163436564 163436671 -79227682 - L1MDa LINE L1 -6381 161 53 3500 218 6 8 chr1 163438137 163438937 -79225416 - L1PA12 LINE L1 -3391 4193 3395 3027 153 24 15 chr1 163439138 163439953 -79224400 - L1PA12 LINE L1 -4202 3382 2559 260 294 79 0 chr1 163440558 163440665 -79223688 + MIR SINE MIR 65 142 -66 942 52 0 0 chr1 163441703 163441818 -79222535 - AluY SINE Alu -6 305 191 272 250 60 0 chr1 163442398 163442482 -79221871 + L1M4 LINE L1 4771 4859 -1287 1296 87 0 0 chr1 163442489 163442662 -79221691 - L1PA11 LINE L1 0 6174 6002 9387 66 6 14 chr1 163442762 163444052 -79220301 - L1P LINE L1 -4865 1281 2 679 113 0 0 chr1 163445182 163445288 -79219065 - L1PA8 LINE L1 -134 6038 5933 * 1347 50 11 0 chr1 163445286 163445465 -79218888 + L1P3 LINE L1 5613 5793 -379 386 319 60 38 chr1 163446066 163446251 -79218102 + L3 LINE CR1 1381 1569 -8 21 36 0 0 chr1 163446530 163446558 -79217795 + AT_rich Low_complexity Low_complexity 1 28 0 204 389 127 31 chr1 163446672 163446983 -79217370 - L2 LINE L2 0 3272 2910 1971 146 10 7 chr1 163446983 163447291 -79217062 + AluY SINE Alu 1 309 -2 204 389 127 31 chr1 163447291 163447395 -79216958 - L2 LINE L2 -362 2910 2817 342 165 29 29 chr1 163447397 163447500 -79216853 + GA-rich Low_complexity Low_complexity 1 103 0 211 382 8 8 chr1 163447562 163447685 -79216668 - L2 LINE L2 -461 2853 2731 468 316 69 25 chr1 163447973 163448248 -79216105 - L2 LINE L2 -773 2541 2255 399 246 44 9 chr1 163448685 163448799 -79215554 + MIR SINE MIR 137 254 -8 559 63 38 0 chr1 163448862 163448941 -79215412 + L1PA12 LINE L1 6086 6167 -1 2655 39 0 0 chr1 163449359 163449668 -79214685 - AluY SINE Alu -2 309 1 1027 175 40 0 chr1 163449851 163450028 -79214325 + MER5A DNA MER1_type 1 184 -5 427 262 84 0 chr1 163450293 163450400 -79213953 + L2 LINE L2 3155 3270 -2 702 273 65 0 chr1 163450460 163450686 -79213667 + MIR SINE MIR 18 261 -1 1090 193 149 30 chr1 163453098 163453534 -79210819 - LTR54B LTR ERV1 -2 496 9 478 227 67 17 chr1 163453848 163453967 -79210386 - MER5B DNA MER1_type 0 178 54 1622 185 57 38 chr1 163455121 163455488 -79208865 - MLT1A2 LTR MaLR 0 374 1 214 222 0 0 chr1 163456073 163456118 -79208235 + L2 LINE L2 2190 2234 -1080 889 262 42 114 chr1 163456284 163457021 -79207332 - MER77 LTR ERV1 -8 597 23 1484 228 19 21 chr1 163457091 163457468 -79206885 + L1P3 LINE L1 3 378 -5497 20027 171 17 25 chr1 163457481 163461506 -79202847 + L1P3 LINE L1 571 4571 -1890 2478 64 7 0 chr1 163461506 163461802 -79202551 - AluY SINE Alu -13 298 1 20027 171 17 25 chr1 163461802 163462269 -79202084 + L1P3 LINE L1 4571 5040 -1421 1205 199 14 14 chr1 163462285 163462582 -79201771 - Charlie2a DNA MER1_type -803 2059 1763 470 298 58 24 chr1 163462586 163462794 -79201559 - LTR16A LTR ERVL -181 269 55 1262 116 5 10 chr1 163462848 163463047 -79201306 + L1PA13 LINE L1 5961 6158 -5 1573 167 17 50 chr1 163463056 163463355 -79200998 - AluJb SINE Alu -23 289 1 555 225 104 0 chr1 163463419 163463592 -79200761 - Charlie2a DNA MER1_type -1206 1656 1466 1833 244 69 39 chr1 163463660 163464309 -79200044 - Charlie2b DNA MER1_type -2113 669 1 222 370 41 14 chr1 163464706 163464852 -79199501 + L2 LINE L2 2594 2743 -571 214 391 93 65 chr1 163465404 163465652 -79198701 + L2 LINE L2 2999 3253 -19 1002 211 70 0 chr1 163466431 163466644 -79197709 - MLT1F LTR MaLR 0 542 315 692 110 0 8 chr1 163466716 163466834 -79197519 + (GGAGA)n Simple_repeat Simple_repeat 2 118 0 2266 242 80 16 chr1 163466840 163467813 -79196540 + L1MDa LINE L1 1766 2803 -3737 351 169 0 84 chr1 163468146 163468229 -79196124 - Tigger7 DNA MER2_type -16 2471 2396 * 2810 168 36 4 chr1 163468228 163468733 -79195620 - Tigger7 DNA MER2_type -212 521 1 1974 286 70 21 chr1 163468738 163469413 -79194940 - L2 LINE L2 -572 2742 2035 586 293 49 0 chr1 163469414 163469578 -79194775 - L2 LINE L2 -1989 1325 1154 833 149 58 0 chr1 163469833 163469987 -79194366 - HSMAR2 DNA Mariner -1 1301 1139 2682 54 0 8 chr1 163469987 163470360 -79193993 - L1PA6 LINE L1 -925 5221 4852 7034 52 6 2 chr1 163470371 163471267 -79193086 + L1PA6 LINE L1 5254 6152 -2 6734 143 22 4 chr1 163471269 163472399 -79191954 - HSMAR2 DNA Mariner -150 1152 3 310 308 33 0 chr1 163472726 163472846 -79191507 + L1ME4a LINE L1 5983 6106 -15 276 30 0 0 chr1 163473034 163473067 -79191286 + (CA)n Simple_repeat Simple_repeat 1 33 0 243 304 196 5 chr1 163473203 163473397 -79190956 - L1MC/D LINE L1 -2023 5785 5555 267 148 115 0 chr1 163473405 163473466 -79190887 + MLT1E2 LTR MaLR 4 71 -583 388 185 109 11 chr1 163473501 163473593 -79190760 + MLT1E2 LTR MaLR 112 212 -414 916 245 86 50 chr1 163474033 163474416 -79189937 - LTR40a LTR ERVL -122 397 1 320 233 0 0 chr1 163474443 163474516 -79189837 - HERVL40 LTR ERVL -50 5480 5408 325 285 56 45 chr1 163474872 163475051 -79189302 + L1M4 LINE L1 3875 4055 -2091 245 304 50 37 chr1 163476620 163476801 -79187552 - MIR SINE MIR -16 246 1 405 300 0 0 chr1 163477129 163477229 -79187124 + L2 LINE L2 3214 3313 0 558 310 156 34 chr1 163478102 163478719 -79185634 + L2 LINE L2 1903 2594 -720 330 361 57 0 chr1 163479245 163479367 -79184986 + L2 LINE L2 3141 3269 -3 272 220 0 0 chr1 163479997 163480056 -79184297 + U13 snRNA snRNA 1 59 -45 25 0 0 0 chr1 163480473 163480498 -79183855 + AT_rich Low_complexity Low_complexity 1 25 0 657 242 115 8 chr1 163480660 163480866 -79183487 - MIR SINE MIR -6 256 31 2121 116 32 0 chr1 163480916 163481262 -79183091 + L1MA4 LINE L1 5939 6295 -5 2269 119 0 0 chr1 163481383 163481677 -79182676 - AluSg SINE Alu -16 294 1 270 312 46 0 chr1 163482363 163482472 -79181881 + L1ME3 LINE L1 619 732 -5473 404 288 40 9 chr1 163482474 163482696 -79181657 + L1ME3 LINE L1 1589 1817 -4579 1723 133 13 36 chr1 163482797 163483099 -79181254 + Tigger1 DNA MER2_type 532 826 -1592 9336 128 29 10 chr1 163483262 163484823 -79179530 + Tigger1 DNA MER2_type 828 2417 -1 319 225 38 0 chr1 163484824 163484904 -79179449 + MER58B DNA MER1_type 259 341 0 2246 259 52 40 chr1 163485005 163485956 -79178397 + L1ME3 LINE L1 4547 5531 -700 1689 166 0 54 chr1 163485956 163486269 -79178084 + AluJo SINE Alu 1 296 -16 2246 259 52 40 chr1 163486269 163486972 -79177381 + L1ME3 LINE L1 5531 6224 -7 485 306 88 22 chr1 163486958 163487082 -79177271 + L1MEd LINE L1 2515 2629 -3586 * 1452 170 62 33 chr1 163487082 163487379 -79176974 + AluJb SINE Alu 1 305 0 485 306 88 22 chr1 163487379 163487744 -79176609 + L1MEd LINE L1 2629 3037 -3178 1361 292 137 47 chr1 163487756 163489012 -79175341 + L1ME LINE L1 55 1423 -4973 12890 209 29 11 chr1 163489039 163489926 -79174427 + L1PA16 LINE L1 2014 2883 -3283 2354 171 31 0 chr1 163489926 163490341 -79174012 - MSTA LTR MaLR 0 428 1 12890 209 29 11 chr1 163490341 163493519 -79170834 + L1PA16 LINE L1 2883 6153 -13 328 263 71 29 chr1 163493520 163493664 -79170689 + L1ME LINE L1 3112 3261 -2954 2161 224 49 9 chr1 163493769 163494317 -79170036 + L1ME LINE L1 5323 5892 -343 4152 126 12 8 chr1 163494319 163494963 -79169390 - HSMAR2 DNA Mariner -653 649 3 274 245 31 80 chr1 163495205 163495368 -79168985 - L2 LINE L2 -1 3312 3158 180 313 88 38 chr1 163495687 163495767 -79168586 - L2 LINE L2 -380 2933 2850 204 225 0 0 chr1 163496613 163496653 -79167700 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 264 246 193 53 chr1 163497443 163497630 -79166723 - MIR SINE MIR -19 243 31 791 272 46 39 chr1 163497990 163498295 -79166058 + LTR16A LTR ERVL 56 362 -88 483 116 27 0 chr1 163498871 163498983 -79165370 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 261 309 168 13 chr1 163499577 163499726 -79164627 + MIR SINE MIR 19 190 -72 281 319 43 0 chr1 163499828 163499922 -79164431 + MIR3 SINE MIR 101 198 -10 286 229 48 48 chr1 163500161 163500266 -79164087 + MIR SINE MIR 128 232 -30 187 182 0 0 chr1 163500370 163500403 -79163950 - L2 LINE L2 0 3313 3281 187 238 369 0 chr1 163500849 163500933 -79163420 + MIR SINE MIR 38 152 -56 276 301 26 77 chr1 163501257 163501413 -79162940 - MIR3 SINE MIR -44 164 17 3903 82 39 11 chr1 163501777 163502341 -79162012 - LTR19B LTR ERV1 0 580 1 325 311 52 26 chr1 163502461 163502654 -79161699 - L1ME4a LINE L1 -89 6101 5904 1686 196 91 0 chr1 163503415 163503746 -79160607 - MLT1F1 LTR MaLR -206 361 1 1071 131 201 94 chr1 163504415 163504744 -79159609 - THE1B LTR MaLR 0 364 1 511 169 57 96 chr1 163504812 163504989 -79159364 + MER104 DNA Tc2 7 176 -4 894 226 28 0 chr1 163506041 163506258 -79158095 + L1MC4 LINE L1 7424 7646 -396 912 209 80 84 chr1 163506361 163506801 -79157552 + L1MC4 LINE L1 7604 8041 -1 845 241 60 48 chr1 163506877 163507208 -79157145 - L1ME4a LINE L1 -747 5468 5153 372 22 0 0 chr1 163507208 163507253 -79157100 + (TG)n Simple_repeat Simple_repeat 2 46 0 845 241 60 48 chr1 163507253 163507451 -79156902 - L1ME4a LINE L1 -1062 5153 4959 1047 256 162 26 chr1 163507494 163507997 -79156356 - MLT1G3 LTR MaLR 0 567 1 3328 264 95 42 chr1 163508009 163510160 -79154193 - L1MEc LINE L1 -1861 4354 2113 592 214 22 181 chr1 163510161 163510597 -79153756 - LTR41 LTR ERVL 0 795 409 613 212 112 12 chr1 163510626 163510796 -79153557 - LTR41 LTR ERVL -586 187 1 216 303 182 20 chr1 163511808 163511907 -79152446 - MER91A DNA MER1_type -21 175 61 24 32 0 0 chr1 163512404 163512435 -79151918 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 163513007 163513029 -79151324 + AT_rich Low_complexity Low_complexity 1 22 0 273 313 98 28 chr1 163513358 163513572 -79150781 + L2 LINE L2 3043 3271 -42 2260 167 22 51 chr1 163514658 163515148 -79149205 - L1 LINE L1 -832 5314 4839 307 258 31 0 chr1 163515153 163515250 -79149103 + L1MA9 LINE L1 6183 6282 -30 22 0 0 0 chr1 163515250 163515272 -79149081 + AT_rich Low_complexity Low_complexity 1 22 0 361 184 235 0 chr1 163515520 163515618 -79148735 - MER5C DNA MER1_type 0 324 204 25 51 0 0 chr1 163515631 163515670 -79148683 + AT_rich Low_complexity Low_complexity 1 39 0 409 188 104 0 chr1 163515754 163515850 -79148503 - L1M4 LINE L1 -1053 5093 4988 1099 266 171 0 chr1 163515854 163516181 -79148172 + MLT1H1 LTR MaLR 13 395 -160 256 62 0 0 chr1 163516288 163516320 -79148033 + U2 snRNA snRNA 3 34 -154 226 264 100 44 chr1 163516469 163516719 -79147634 + L1M4 LINE L1 4359 4622 -1524 1112 112 0 41 chr1 163517077 163517247 -79147106 + AluY SINE Alu 1 163 -148 326 98 20 0 chr1 163517618 163517669 -79146684 + L1ME LINE L1 5558 5609 -512 634 112 0 0 chr1 163517688 163517777 -79146576 + L1PA8 LINE L1 10 98 -6363 * 7246 139 11 14 chr1 163517773 163518922 -79145431 + L1PA8 LINE L1 308 1453 -5008 * 11905 94 15 7 chr1 163518920 163521326 -79143027 + L1PA8 LINE L1 3972 6383 -104 * 43169 43 6 0 chr1 163521324 163527437 -79136916 + L1PA4 LINE L1 1 6152 -3 924 40 0 24 chr1 163527497 163527621 -79136732 + L1PA8 LINE L1 6367 6487 0 403 199 31 87 chr1 163527624 163527785 -79136568 + L1ME4a LINE L1 5029 5180 -966 533 278 53 43 chr1 163527800 163528079 -79136274 + L1ME4a LINE L1 5597 5881 -240 1949 159 30 3 chr1 163528079 163528413 -79135940 + MER2 DNA MER2_type 1 343 -1 533 278 53 43 chr1 163528413 163528432 -79135921 + L1ME4a LINE L1 5881 5898 -223 38 103 0 0 chr1 163529182 163529318 -79135035 + AT_rich Low_complexity Low_complexity 1 136 0 267 315 11 0 chr1 163529355 163529444 -79134909 - MIR SINE MIR -109 153 64 2508 83 0 0 chr1 163529796 163530109 -79134244 - AluSq SINE Alu 0 313 1 195 357 0 14 chr1 163530625 163530695 -79133658 + MIR SINE MIR 21 89 -119 1074 153 51 33 chr1 163530797 163531012 -79133341 + MER20 DNA MER1_type 1 219 0 939 118 0 0 chr1 163531340 163531467 -79132886 + AluSg/x SINE Alu 168 294 -18 22 0 0 0 chr1 163531467 163531489 -79132864 + AT_rich Low_complexity Low_complexity 1 22 0 2096 104 31 3 chr1 163531498 163531785 -79132568 + AluSg SINE Alu 1 295 -15 1080 219 74 140 chr1 163532070 163532348 -79132005 + MLT2B1 LTR ERVL 6 301 -219 1355 201 36 62 chr1 163532348 163532732 -79131621 + MLT1A2 LTR MaLR 1 374 0 1080 219 74 140 chr1 163532732 163532963 -79131390 + MLT2B1 LTR ERVL 301 479 -41 198 0 0 0 chr1 163532963 163532985 -79131368 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 1080 219 74 140 chr1 163532985 163533017 -79131336 + MLT2B1 LTR ERVL 479 512 -8 22894 175 43 11 chr1 163533023 163538035 -79126318 + ERVL-B1-B1 LTR ERVL 1 5299 -465 1775 140 58 24 chr1 163538035 163538328 -79126025 + AluJo SINE Alu 1 303 -9 22894 175 43 11 chr1 163538328 163538803 -79125550 + ERVL-B1-B1 LTR ERVL 5299 5757 -7 1603 181 148 80 chr1 163538803 163539249 -79125104 + MLT2B1 LTR ERVL 1 484 -36 411 21 0 0 chr1 163539249 163539297 -79125056 + (CA)n Simple_repeat Simple_repeat 2 49 0 1603 181 148 80 chr1 163539297 163539337 -79125016 + MLT2B1 LTR ERVL 484 520 0 2916 96 5 5 chr1 163539782 163540157 -79124196 + THE1C LTR MaLR 1 375 0 437 339 42 34 chr1 163540448 163540684 -79123669 + MIR SINE MIR 19 256 -6 205 307 34 0 chr1 163541558 163541646 -79122707 + L2 LINE L2 1346 1436 -1878 706 275 178 35 chr1 163542030 163542434 -79121919 - L2 LINE L2 0 3313 2852 258 352 9 9 chr1 163542453 163542561 -79121792 + L2 LINE L2 2966 3073 -199 200 233 0 0 chr1 163542650 163542693 -79121660 + L2 LINE L2 3229 3271 -1 347 125 0 16 chr1 163542694 163542758 -79121595 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 224 345 0 11 chr1 163542988 163543075 -79121278 - L2 LINE L2 -1 3271 3186 327 321 80 28 chr1 163543220 163543432 -79120921 + MIR SINE MIR 2 224 -38 1630 218 65 15 chr1 163544303 163544703 -79119650 - MER31B LTR ERV1 -46 420 1 3717 175 41 10 chr1 163545653 163546340 -79118013 - MER67C LTR ERV1 -2 708 1 193 225 50 0 chr1 163546345 163546385 -79117968 + L2 LINE L2 3184 3225 -47 283 321 25 0 chr1 163546450 163546531 -79117822 - L2 LINE L2 -47 3266 3184 1246 173 18 44 chr1 163546687 163546912 -79117441 - MER20 DNA MER1_type 0 219 1 974 245 89 22 chr1 163546956 163547047 -79117306 + L1M4 LINE L1 2965 3048 -3098 2307 134 36 38 chr1 163547047 163547412 -79116941 + THE1B LTR MaLR 1 364 0 974 245 89 22 chr1 163547412 163547724 -79116629 + L1M4 LINE L1 3048 3395 -2751 585 196 0 0 chr1 163547756 163547858 -79116495 + MLT1I LTR MaLR 306 407 -2 2418 75 0 0 chr1 163547947 163548253 -79116100 - AluY SINE Alu -5 306 1 206 293 86 79 chr1 163549289 163549429 -79114924 + MER5A DNA MER1_type 25 165 -24 373 327 0 18 chr1 163549672 163549837 -79114516 - MLT1I LTR MaLR -208 201 40 433 308 88 12 chr1 163550088 163550324 -79114029 + L2 LINE L2 2784 3032 -240 658 160 0 0 chr1 163550588 163550694 -79113659 + L1P LINE L1 2920 3025 -3121 5807 159 28 44 chr1 163551347 163552435 -79111918 - MER11C LTR ERVK -1 1070 1 219 250 0 0 chr1 163552437 163552485 -79111868 + (TG)n Simple_repeat Simple_repeat 1 48 0 3604 158 8 17 chr1 163552913 163553567 -79110786 + L1P LINE L1 3065 3712 -2434 27 73 0 0 chr1 163553725 163553780 -79110573 + AT_rich Low_complexity Low_complexity 1 55 0 2571 187 34 38 chr1 163553887 163554394 -79109959 - MLT1D LTR MaLR 0 505 1 244 267 165 57 chr1 163556239 163556415 -79107938 + MER117 DNA MER1_type 3 197 0 308 286 68 14 chr1 163556417 163556542 -79107811 - MIR3 SINE MIR -50 158 22 2332 84 0 10 chr1 163556542 163556838 -79107515 - AluSp SINE Alu -20 293 1 308 286 68 14 chr1 163556838 163556859 -79107494 - MIR3 SINE MIR -186 22 4 1591 179 105 6 chr1 163556931 163557256 -79107097 + MLT1D LTR MaLR 3 359 -146 1862 239 127 30 chr1 163557326 163558036 -79106317 + L1ME3A LINE L1 5395 6170 0 201 211 19 19 chr1 163558228 163558280 -79106073 + L2 LINE L2 3221 3272 0 232 234 16 62 chr1 163558321 163558385 -79105968 - L2 LINE L2 -9 3263 3203 216 97 0 0 chr1 163558456 163558487 -79105866 + (A)n Simple_repeat Simple_repeat 1 31 0 279 0 0 0 chr1 163558514 163558545 -79105808 + (A)n Simple_repeat Simple_repeat 1 31 0 1904 98 4 0 chr1 163560370 163560615 -79103738 + AluSx SINE Alu 50 295 -17 596 262 71 41 chr1 163562950 163563304 -79101049 + L1MC4a LINE L1 5528 5791 -330 233 119 0 0 chr1 163563382 163563424 -79100929 + LTR66 LTR ERVL 398 439 -171 22 0 0 0 chr1 163563546 163563568 -79100785 + AT_rich Low_complexity Low_complexity 1 22 0 259 200 110 10 chr1 163563862 163563962 -79100391 - MER69 DNA AcHobo -56 2470 2361 771 196 120 0 chr1 163563962 163564120 -79100233 + FRAM SINE Alu 1 176 0 2165 208 83 19 chr1 163564168 163564803 -79099550 - MER69 DNA AcHobo -154 2372 1697 697 254 49 108 chr1 163564812 163564969 -79099384 - MER69 DNA AcHobo -1614 912 780 5643 104 26 18 chr1 163564969 163565786 -79098567 + L1MA2 LINE L1 5482 6304 0 697 254 49 108 chr1 163565786 163565935 -79098418 - MER69 DNA AcHobo -1746 780 624 747 252 63 0 chr1 163565948 163566154 -79098199 + MER69 DNA AcHobo 39 257 -969 1934 258 97 5 chr1 163566167 163566725 -79097628 - MER69 DNA AcHobo -1917 609 1 1273 125 9 161 chr1 163566866 163567202 -79097151 + LTR12 LTR ERV1 1 285 -429 357 163 19 35 chr1 163567203 163567305 -79097048 + LTR30 LTR ERV1 553 723 -71 547 163 11 0 chr1 163567305 163567397 -79096956 + LTR12 LTR ERV1 492 584 -130 45535 101 15 11 chr1 163567413 163573788 -79090565 + HERV9 LTR ERV1 54 6456 -1943 1804 114 30 0 chr1 163573788 163574051 -79090302 + HERV9 LTR ERV1 7628 7898 -501 * 2801 101 3 0 chr1 163574049 163574426 -79089927 + HERV9 LTR ERV1 8022 8399 0 238 200 0 20 chr1 163574426 163574476 -79089877 + LTR30 LTR ERV1 1 49 -673 1065 167 37 65 chr1 163574476 163574787 -79089566 + LTR12 LTR ERV1 51 2032 -406 332 167 59 88 chr1 163574789 163574891 -79089462 + LTR30 LTR ERV1 379 620 -92 551 178 0 0 chr1 163574891 163574981 -79089372 + LTR12 LTR ERV1 625 714 0 225 349 0 0 chr1 163575077 163575163 -79089190 - MER5B DNA MER1_type -3 175 90 2335 72 26 0 chr1 163575168 163575475 -79088878 + L1PA7 LINE L1 5710 6024 -130 5456 87 6 24 chr1 163575475 163576176 -79088177 + LTR12 LTR ERV1 1 688 0 8241 115 26 16 chr1 163576176 163578349 -79086004 + HERV17 LTR ERV1 1 2176 -6223 439 88 15 15 chr1 163578328 163578396 -79085957 + HERV9 LTR ERV1 1759 1826 -6573 * 7604 96 0 5 chr1 163578400 163579426 -79084927 + HERV9 LTR ERV1 2177 3197 -5202 * 9919 79 3 13 chr1 163579417 163580746 -79083607 + HERV9 LTR ERV1 7072 8387 -12 1147 45 22 0 chr1 163580746 163580758 -79083595 + L1PA7 LINE L1 6005 6015 -139 5488 76 13 26 chr1 163580758 163581455 -79082898 + LTR12 LTR ERV1 1 688 0 1147 45 22 0 chr1 163581455 163581576 -79082777 + L1PA7 LINE L1 6015 6141 -13 216 204 0 45 chr1 163581599 163581643 -79082710 - MER5B DNA MER1_type -129 49 8 234 276 0 0 chr1 163581814 163581872 -79082481 - MIR SINE MIR -3 259 202 324 0 0 0 chr1 163581878 163581914 -79082439 + (CA)n Simple_repeat Simple_repeat 1 36 0 548 200 7 76 chr1 163582126 163582271 -79082082 + MER20 DNA MER1_type 81 215 -4 399 303 96 10 chr1 163582747 163582945 -79081408 + MIR SINE MIR 20 234 -28 478 255 79 60 chr1 163583121 163583337 -79081016 - L2 LINE L2 0 3313 3094 21 0 0 0 chr1 163583867 163583888 -79080465 + AT_rich Low_complexity Low_complexity 1 21 0 1979 127 0 14 chr1 163584575 163584866 -79079487 + AluSx SINE Alu 17 303 -9 3591 212 46 75 chr1 163584866 163586186 -79078167 + MLT1A1-int LTR MaLR 462 1727 -8 1586 194 25 32 chr1 163586194 163586551 -79077802 + MLT1A1 LTR MaLR 1 428 0 558 304 16 0 chr1 163586979 163587163 -79077190 + MIR SINE MIR 75 261 -1 212 203 47 16 chr1 163587301 163587365 -79076988 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2451 195 37 18 chr1 163587417 163587930 -79076423 + Charlie1b DNA MER1_type 1 523 0 366 261 63 47 chr1 163588752 163589177 -79075176 - L1MEd LINE L1 -5117 1002 472 601 278 6 0 chr1 163589394 163589563 -79074790 - L1MEd LINE L1 -5946 173 4 2455 97 0 0 chr1 163589738 163590049 -79074304 - AluSq SINE Alu -2 311 1 249 83 0 0 chr1 163590300 163590336 -79074017 + (TC)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr1 163590439 163590469 -79073884 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr1 163590861 163590883 -79073470 + AT_rich Low_complexity Low_complexity 1 22 0 410 303 15 15 chr1 163590995 163591127 -79073226 + ERVL LTR ERVL 1967 2098 -3666 319 246 146 0 chr1 163591134 163591264 -79073089 + MIR SINE MIR 33 190 -61 21 36 0 0 chr1 163591786 163591814 -79072539 + AT_rich Low_complexity Low_complexity 1 28 0 1007 260 70 65 chr1 163592679 163593105 -79071248 - Charlie7 DNA MER1_type -1338 1274 843 724 206 8 0 chr1 163593105 163593236 -79071117 + FLAM_A SINE Alu 2 133 0 1007 260 70 65 chr1 163593236 163593420 -79070933 - Charlie7 DNA MER1_type -1769 843 661 1958 193 45 69 chr1 163593425 163593912 -79070441 + MLT2B1 LTR ERVL 1 475 -45 1154 53 29 0 chr1 163593912 163594082 -79070271 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 1958 193 45 69 chr1 163594082 163594127 -79070226 + MLT2B1 LTR ERVL 475 520 0 10621 197 29 31 chr1 163594154 163594375 -79069978 + ERVL-B1 LTR ERVL 22 242 -5522 392 0 21 0 chr1 163594375 163594423 -79069930 + (TA)n Simple_repeat Simple_repeat 2 50 0 10621 197 29 31 chr1 163594423 163595231 -79069122 + ERVL-B1 LTR ERVL 242 1050 -4714 1856 163 3 3 chr1 163595231 163595525 -79068828 + AluJo SINE Alu 1 294 -18 10621 197 29 31 chr1 163595525 163596829 -79067524 + ERVL-B1 LTR ERVL 1050 2352 -3412 6973 161 27 6 chr1 163596933 163598186 -79066167 - ERVL LTR ERVL -1206 4558 3279 3053 141 10 91 chr1 163598190 163598376 -79065977 - ERVL LTR ERVL -2691 3073 2874 2507 83 0 6 chr1 163598376 163598689 -79065664 + AluY SINE Alu 1 311 0 3053 141 10 91 chr1 163598689 163599175 -79065178 - ERVL LTR ERVL -2890 2874 2455 1860 230 148 14 chr1 163653010 163653585 -79010768 + L2 LINE L2 1895 2546 -768 674 283 189 0 chr1 163653590 163653887 -79010466 + L2 LINE L2 2960 3312 -1 866 102 31 0 chr1 163654832 163654960 -79009393 + AluSg/x SINE Alu 173 304 -6 2118 85 9 63 chr1 163655210 163655527 -79008826 + AluSg1 SINE Alu 1 300 -9 267 54 0 0 chr1 163655531 163655568 -79008785 + (TA)n Simple_repeat Simple_repeat 1 37 0 226 149 45 30 chr1 163655579 163655646 -79008707 + Charlie7 DNA MER1_type 2490 2557 -55 189 356 70 26 chr1 163655647 163655762 -79008591 + L2 LINE L2 2937 3056 -216 184 352 57 38 chr1 163655876 163655981 -79008372 + L2 LINE L2 3160 3266 -6 214 188 0 47 chr1 163656207 163656271 -79008082 + T-rich Low_complexity Low_complexity 5 65 0 750 288 98 30 chr1 163658545 163659026 -79005327 - L2 LINE L2 -61 3252 2730 1869 159 60 20 chr1 163660716 163661067 -79003286 - MLT1A1 LTR MaLR 0 365 1 2269 103 17 0 chr1 163661094 163661395 -79002958 - AluSg SINE Alu -4 306 1 758 168 32 8 chr1 163661643 163661768 -79002585 + FLAM_A SINE Alu 1 128 -5 801 233 121 40 chr1 163662319 163662641 -79001712 - MER7A DNA MER2_type 0 346 1 235 300 167 0 chr1 163663162 163663252 -79001101 + MLT1L LTR MaLR 175 279 -336 389 301 115 22 chr1 163663324 163663550 -79000803 + MLT1K LTR MaLR 335 581 -7 252 341 34 0 chr1 163663666 163663754 -79000599 - MER5A DNA MER1_type -8 181 91 774 200 0 0 chr1 163663790 163663910 -79000443 - FLAM_A SINE Alu -13 120 1 342 315 25 31 chr1 163664214 163664376 -78999977 + MLT1J LTR MaLR 301 461 -50 4020 81 29 13 chr1 163664535 163664587 -78999766 + MER41A LTR ERV1 1 51 -503 3913 102 2 4 chr1 163664587 163665099 -78999254 + MER9 LTR ERVK 1 511 0 4020 81 29 13 chr1 163665099 163665590 -78998763 + MER41A LTR ERV1 51 553 -1 262 143 351 26 chr1 163665675 163665752 -78998601 + MER41A-int LTR ERV1 1 102 -5844 5418 124 71 23 chr1 163665761 163666372 -78997981 + MER41A-int LTR ERV1 1 581 -5365 2310 106 3 0 chr1 163666372 163666675 -78997678 - AluSq SINE Alu -9 304 1 5418 124 71 23 chr1 163666675 163667790 -78996563 + MER41A-int LTR ERV1 581 1993 -3953 14043 136 28 39 chr1 163667792 163670795 -78993558 + MER41A-int LTR ERV1 2167 5689 -257 2240 125 0 0 chr1 163670795 163671098 -78993255 - AluSg SINE Alu -7 303 1 14043 136 28 39 chr1 163671098 163671351 -78993002 + MER41A-int LTR ERV1 5689 5943 -3 333 93 0 0 chr1 163671351 163671394 -78992959 + MER41A LTR ERV1 1 43 -511 1750 136 4 8 chr1 163671522 163671786 -78992567 + AluSc SINE Alu 42 304 -5 647 273 73 84 chr1 163673000 163673344 -78991009 - MER102b DNA MER1_type -1 340 1 232 352 209 0 chr1 163673767 163673872 -78990481 + L2 LINE L2 3119 3245 -27 615 286 16 16 chr1 163675269 163675454 -78988899 - MIR SINE MIR -60 202 18 401 254 93 83 chr1 163676002 163676195 -78988158 - MER91A DNA MER1_type 0 196 2 1676 166 34 106 chr1 163676977 163676996 -78987357 + MLT1B LTR MaLR 1 20 -370 207 0 0 0 chr1 163676996 163677019 -78987334 + (CA)n Simple_repeat Simple_repeat 1 23 0 1676 166 34 106 chr1 163677019 163677415 -78986938 + MLT1B LTR MaLR 20 386 -4 24 53 0 0 chr1 163677796 163677834 -78986519 + AT_rich Low_complexity Low_complexity 1 38 0 269 276 26 43 chr1 163677892 163678008 -78986345 - L3 LINE CR1 -193 1384 1271 2126 131 0 3 chr1 163678649 163678946 -78985407 + AluSx SINE Alu 1 296 -16 22 35 0 0 chr1 163679014 163679043 -78985310 + AT_rich Low_complexity Low_complexity 1 29 0 14670 114 11 7 chr1 163679797 163680511 -78983842 - L1PA8 LINE L1 0 6172 5463 2307 101 10 0 chr1 163680511 163680817 -78983536 - AluSc SINE Alu 0 309 1 14670 114 11 7 chr1 163680817 163683032 -78981321 - L1PA8 LINE L1 -709 5463 3265 13833 169 17 26 chr1 163683133 163685500 -78978853 - L1PA8 LINE L1 -2827 3319 976 189 74 0 0 chr1 163685500 163685527 -78978826 + (TTG)n Simple_repeat Simple_repeat 1 27 0 13833 169 17 26 chr1 163685527 163685830 -78978523 - L1PA8 LINE L1 -5170 976 672 6498 78 8 1 chr1 163685955 163686808 -78977545 - L1PA13 LINE L1 -1 6162 5304 441 246 124 38 chr1 163686845 163687067 -78977286 - MIR SINE MIR -1 261 20 2273 100 3 13 chr1 163687621 163687922 -78976431 + AluSg SINE Alu 1 298 -12 1262 198 86 149 chr1 163688523 163689189 -78975164 + MLT1E2 LTR MaLR 1 626 0 422 261 35 28 chr1 163689362 163689504 -78974849 + MIR SINE MIR 3 145 -117 1702 127 34 30 chr1 163689509 163689776 -78974577 + AluSx SINE Alu 1 268 -44 292 28 0 0 chr1 163689777 163689813 -78974540 - AluYa5/8 SINE Alu -36 264 229 1316 135 16 0 chr1 163689813 163690005 -78974348 - AluSg SINE Alu -115 195 1 470 158 104 120 chr1 163690047 163690230 -78974123 + L2 LINE L2 3119 3298 -15 210 71 0 0 chr1 163690233 163690261 -78974092 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 261 57 0 0 chr1 163690545 163690580 -78973773 + (TC)n Simple_repeat Simple_repeat 2 36 0 254 167 17 0 chr1 163691120 163691180 -78973173 + (TA)n Simple_repeat Simple_repeat 2 62 0 207 0 0 0 chr1 163691528 163691551 -78972802 + (A)n Simple_repeat Simple_repeat 1 23 0 2167 38 22 95 chr1 163691560 163691877 -78972476 + AluY SINE Alu 1 294 -17 280 360 43 12 chr1 163691910 163692071 -78972282 - L2 LINE L2 -219 3053 2888 1105 209 39 4 chr1 163692103 163692361 -78971992 - ORSL DNA AcHobo 0 275 9 1383 218 113 71 chr1 163692365 163692732 -78971621 + L2 LINE L2 2812 3205 -108 2427 97 0 0 chr1 163692732 163693043 -78971310 + AluSx SINE Alu 2 312 0 1383 218 113 71 chr1 163693043 163693153 -78971200 + L2 LINE L2 3205 3309 -4 338 129 0 0 chr1 163693762 163693824 -78970529 + L1MC3 LINE L1 7540 7601 -184 240 354 97 0 chr1 163695016 163695129 -78969224 + L2 LINE L2 3149 3272 0 565 272 231 5 chr1 163695148 163695343 -78969010 + MIR SINE MIR 7 245 -17 185 311 0 0 chr1 163695694 163695739 -78968614 - L2 LINE L2 -18 3254 3210 211 184 41 41 chr1 163696157 163696206 -78968147 + L2 LINE L2 3265 3313 0 2139 139 3 0 chr1 163696483 163696786 -78967567 - AluSx SINE Alu -8 304 1 265 226 0 0 chr1 163697198 163697251 -78967102 - L2 LINE L2 -2 3311 3259 413 198 19 38 chr1 163698854 163698960 -78965393 + LTR56 LTR ERV1 1 104 -341 733 269 33 0 chr1 163699760 163699942 -78964411 + MER5A DNA MER1_type 1 188 -1 266 308 103 0 chr1 163700093 163700171 -78964182 + MIR3 SINE MIR 106 191 -17 536 276 6 26 chr1 163700191 163700347 -78964006 + MIR SINE MIR 2 154 -108 360 283 0 0 chr1 163700776 163700868 -78963485 + MIR SINE MIR 157 248 -14 2360 143 66 14 chr1 163700971 163701397 -78962956 + MER83 LTR ERV1 1 448 0 22 0 0 0 chr1 163701463 163701485 -78962868 + AT_rich Low_complexity Low_complexity 1 22 0 497 195 0 0 chr1 163702319 163702406 -78961947 - L2 LINE L2 0 3313 3227 847 179 0 8 chr1 163702406 163702540 -78961813 + FLAM_C SINE Alu 1 133 -10 420 250 4 119 chr1 163702579 163702815 -78961538 - L2 LINE L2 -157 3156 2948 1777 144 6 64 chr1 163702891 163703218 -78961135 - AluJo SINE Alu -3 309 2 188 214 18 0 chr1 163706412 163706468 -78957885 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1858 114 66 7 chr1 163706937 163707208 -78957145 + AluSx SINE Alu 1 287 -25 344 218 11 0 chr1 163707210 163707297 -78957056 + (TA)n Simple_repeat Simple_repeat 1 88 0 401 345 138 54 chr1 163708060 163708486 -78955867 - L2 LINE L2 0 3272 2811 622 170 14 54 chr1 163708621 163708768 -78955585 - MER103 DNA DNA -23 143 3 317 327 231 21 chr1 163708847 163709461 -78954892 - L2 LINE L2 -557 2757 2015 1047 270 59 50 chr1 163709517 163710061 -78954292 + MLT1H LTR MaLR 1 549 0 24692 56 2 2 chr1 163710537 163714659 -78949694 + L1PA6 LINE L1 2028 6152 -2 267 338 76 27 chr1 163715072 163715400 -78948953 + MLT1K-int LTR MaLR 1028 1371 0 324 253 11 0 chr1 163715400 163715491 -78948862 + MLT1K LTR MaLR 1 92 -463 723 253 43 35 chr1 163715529 163715793 -78948560 - MLT1H LTR MaLR -239 310 2 716 204 0 0 chr1 163715893 163716025 -78948328 + FLAM_C SINE Alu 2 133 0 1393 147 0 14 chr1 163716034 163716252 -78948101 + AluSg/x SINE Alu 96 310 0 1051 219 91 38 chr1 163716257 163716709 -78947644 + L1MC5 LINE L1 7453 7928 -33 262 233 167 50 chr1 163718486 163718606 -78945747 - MER5A DNA MER1_type -6 183 50 * 309 289 133 0 chr1 163718532 163718622 -78945731 + MER5A DNA MER1_type 65 166 -23 993 216 0 11 chr1 163719763 163719948 -78944405 + AluJo SINE Alu 1 183 -129 1815 143 29 0 chr1 163720125 163720439 -78943914 + MER47A DNA MER2_type 44 366 0 190 315 153 18 chr1 163721900 163722011 -78942342 + L2 LINE L2 3136 3261 -11 687 319 21 0 chr1 163722240 163722431 -78941922 - MER91A DNA MER1_type -1 195 1 316 219 95 83 chr1 163723177 163723568 -78940785 + LTR4 LTR ERV1 112 587 0 368 313 61 30 chr1 163724957 163725187 -78939166 + MLT1K LTR MaLR 143 379 -209 1665 202 179 33 chr1 163725772 163726286 -78938067 - MLT1G1 LTR MaLR -6 589 1 272 319 60 66 chr1 163727308 163727474 -78936879 - L2 LINE L2 -77 3195 3031 920 229 112 27 chr1 163727960 163728083 -78936270 + AluJo SINE Alu 1 112 -200 2216 113 7 3 chr1 163728083 163728392 -78935961 - AluSx SINE Alu -2 310 1 920 229 112 27 chr1 163728392 163728526 -78935827 + AluJo SINE Alu 112 280 -32 219 186 0 0 chr1 163728583 163728626 -78935727 + G-rich Low_complexity Low_complexity 5 47 0 748 202 150 0 chr1 163728684 163728882 -78935471 - MLT1G1 LTR MaLR -389 206 1 2247 96 0 0 chr1 163729122 163729455 -78934898 - AluSc SINE Alu 0 333 1 457 132 231 0 chr1 163729496 163729587 -78934766 + FLAM_A SINE Alu 1 112 -30 411 21 0 0 chr1 163729588 163729636 -78934717 + (GA)n Simple_repeat Simple_repeat 1 48 0 276 100 0 0 chr1 163729637 163729677 -78934676 + (GGGGA)n Simple_repeat Simple_repeat 2 41 0 15114 120 18 20 chr1 163730119 163732542 -78931811 + Tigger1 DNA MER2_type 1 2418 0 1101 232 104 65 chr1 163732822 163733314 -78931039 + MLT1J LTR MaLR 1 511 0 256 302 9 38 chr1 163734062 163734168 -78930185 + MIR SINE MIR 63 165 -97 314 269 96 10 chr1 163734168 163734272 -78930081 - MER5A DNA MER1_type 0 189 77 2131 120 0 43 chr1 163735359 163735683 -78928670 + AluSx SINE Alu 3 312 0 283 346 27 1 chr1 163735748 163735870 -78928483 - MIR SINE MIR -58 150 28 21 0 0 0 chr1 163736313 163736334 -78928019 + AT_rich Low_complexity Low_complexity 1 21 0 816 228 53 44 chr1 163737166 163737394 -78926959 + MIR SINE MIR 20 249 -13 393 250 0 109 chr1 163737628 163737784 -78926569 + MIR SINE MIR 65 203 -59 568 265 114 48 chr1 163738985 163739411 -78924942 + LTR16A LTR ERVL 1 449 -1 2241 111 3 13 chr1 163739506 163739821 -78924532 - AluSx SINE Alu 0 312 1 232 225 79 34 chr1 163739866 163739955 -78924398 + L2 LINE L2 3152 3244 -69 330 45 0 0 chr1 163740568 163740612 -78923741 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 57 0 0 chr1 163741127 163741162 -78923191 + AT_rich Low_complexity Low_complexity 1 35 0 261 167 0 0 chr1 163741391 163741439 -78922914 - L1MA10 LINE L1 -28 6306 6259 202 265 185 52 chr1 163741512 163741723 -78922630 - L2 LINE L2 0 3313 3075 6738 101 16 4 chr1 163742290 163743350 -78921003 - L1MA2 LINE L1 0 7723 6651 2586 68 0 0 chr1 163743352 163743662 -78920691 - AluY SINE Alu -1 310 1 1346 84 0 0 chr1 163743681 163743847 -78920506 - AluSg/x SINE Alu 0 312 147 3613 179 3 1 chr1 163743862 163744587 -78919766 - L1MA2 LINE L1 -922 6643 5918 8073 142 17 65 chr1 163744598 163746851 -78917502 - L1MA2 LINE L1 -2190 5375 3270 4209 93 2 3 chr1 163746851 163747433 -78916920 - L1PA14 LINE L1 -3 6158 5578 8073 142 17 65 chr1 163747433 163747903 -78916450 - L1MA2 LINE L1 -4295 3270 2779 1066 76 6 0 chr1 163747902 163748059 -78916294 - L1MA2 LINE L1 -5113 2452 2295 * 2250 105 42 0 chr1 163748056 163748436 -78915917 - L1M1 LINE L1 -4789 2776 2381 532 128 0 0 chr1 163748445 163748531 -78915822 + FLAM_C SINE Alu 53 138 -5 6785 151 114 19 chr1 163748539 163749866 -78914487 - L1M1 LINE L1 -6095 1470 17 1295 272 72 42 chr1 163750033 163750508 -78913845 + L2 LINE L2 2824 3312 -1 738 223 48 5 chr1 163750663 163750851 -78913502 - MIR SINE MIR -3 259 64 289 328 128 26 chr1 163751277 163751472 -78912881 + MIR SINE MIR 21 235 -27 536 309 39 11 chr1 163751554 163751732 -78912621 - MER5A DNA MER1_type 0 189 7 318 321 82 22 chr1 163751701 163751835 -78912518 - MIR3 SINE MIR -59 149 8 * 260 343 52 35 chr1 163752481 163752653 -78911700 + L2 LINE L2 2925 3099 -173 211 279 87 58 chr1 163752669 163752773 -78911580 - MER5A DNA MER1_type -2 187 81 2597 56 0 3 chr1 163753228 163753532 -78910821 - AluY SINE Alu -8 303 1 1752 181 0 3 chr1 163753563 163753850 -78910503 + AluJb SINE Alu 5 290 -22 2459 62 0 7 chr1 163754293 163754600 -78909753 - AluY SINE Alu -6 305 1 22 0 0 0 chr1 163754730 163754752 -78909601 + AT_rich Low_complexity Low_complexity 1 22 0 1312 172 169 0 chr1 163755637 163755927 -78908426 - MER58B DNA MER1_type -2 339 1 266 256 96 24 chr1 163756315 163756440 -78907913 + MIR SINE MIR 79 212 -50 698 212 12 6 chr1 163756721 163756886 -78907467 + MER97a DNA MER1_type? 13 178 -716 514 216 0 0 chr1 163756972 163757083 -78907270 + Tigger8 DNA MER2_type 371 481 -185 2079 154 103 12 chr1 163757267 163757695 -78906658 - MLT1C LTR MaLR 0 467 1 483 191 114 0 chr1 163758067 163758172 -78906181 - MER63A DNA MER1_type 0 117 1 223 200 63 11 chr1 163758173 163758239 -78906114 - MIR3 SINE MIR -50 158 87 229 108 27 0 chr1 163758741 163758778 -78905575 + MER63A DNA MER1_type 1 38 -172 544 254 35 7 chr1 163758865 163759007 -78905346 + MER63A DNA MER1_type 62 207 -3 615 256 11 45 chr1 163759029 163759080 -78905273 - MIR SINE MIR -65 197 146 2173 121 0 3 chr1 163759080 163759377 -78904976 - AluSx SINE Alu -16 296 1 615 256 11 45 chr1 163759377 163759501 -78904852 - MIR SINE MIR -116 146 28 210 282 65 57 chr1 163759519 163759643 -78904710 - L2 LINE L2 -5 3308 3184 208 296 42 0 chr1 163760170 163760241 -78904112 - MIR3 SINE MIR -4 204 131 1186 172 82 26 chr1 163761773 163762076 -78902277 + MER2 DNA MER2_type 1 320 -25 208 296 0 0 chr1 163762406 163762460 -78901893 + GA-rich Low_complexity Low_complexity 2 55 0 1850 163 21 19 chr1 163762698 163763073 -78901280 + L1MB7 LINE L1 5616 5991 -193 726 217 25 0 chr1 163763095 163763256 -78901097 - L1MEc LINE L1 -4640 1756 1592 644 238 91 19 chr1 163763265 163763627 -78900726 - L1MEc LINE L1 -4893 1503 1116 214 239 80 88 chr1 163763989 163764102 -78900251 + MER91B DNA MER1_type 18 129 -61 225 250 18 0 chr1 163764156 163764212 -78900141 + MER91B DNA MER1_type 117 173 -17 21 0 0 0 chr1 163764336 163764357 -78899996 + AT_rich Low_complexity Low_complexity 1 21 0 2258 119 0 3 chr1 163764409 163764719 -78899634 + AluSx SINE Alu 1 309 -3 4038 67 2 2 chr1 163765224 163765718 -78898635 + L1PA8A LINE L1 5613 6109 -22 207 0 0 0 chr1 163765718 163765741 -78898612 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4038 67 2 2 chr1 163765741 163765765 -78898588 + L1PA8A LINE L1 6108 6131 0 316 228 76 0 chr1 163767151 163767230 -78897123 - HAL1 LINE L1 -1319 1188 1104 439 296 65 41 chr1 163767230 163767516 -78896837 - L1M4 LINE L1 -2230 3916 3613 1706 182 3 17 chr1 163767516 163767813 -78896540 + AluJo SINE Alu 1 293 -19 439 296 65 41 chr1 163767813 163767985 -78896368 - L1M4 LINE L1 -2533 3613 3447 1706 184 0 10 chr1 163767999 163768293 -78896060 + AluJo SINE Alu 1 291 -21 330 254 22 14 chr1 163768381 163768519 -78895834 + L1M4 LINE L1 2923 3061 -3085 370 275 112 27 chr1 163768529 163768685 -78895668 + L1MEd LINE L1 970 1158 -4961 2189 126 0 0 chr1 163768685 163768987 -78895366 + AluSx SINE Alu 1 302 -10 370 275 112 27 chr1 163768987 163769088 -78895265 + L1MEd LINE L1 1158 1249 -4870 2838 138 15 10 chr1 163769139 163769619 -78894734 - MER44D DNA MER2_type -1 604 68 5888 178 23 4 chr1 163769631 163771564 -78892789 - L1PA14 LINE L1 -10 6151 4168 3464 201 0 18 chr1 163771566 163771964 -78892389 + L1P LINE L1 1750 2129 -4017 2184 116 0 0 chr1 163771964 163772248 -78892105 + AluSg SINE Alu 1 284 -26 3464 201 0 18 chr1 163772248 163772619 -78891734 + L1P LINE L1 2129 2505 -3641 345 175 0 165 chr1 163772619 163772716 -78891637 - MER44D DNA MER2_type -624 81 1 1569 107 40 0 chr1 163772920 163773173 -78891180 + L1MA5A LINE L1 6030 6292 -5 26 30 0 0 chr1 163773486 163773519 -78890834 + AT_rich Low_complexity Low_complexity 1 33 0 1841 122 79 7 chr1 163773619 163773897 -78890456 - AluSg SINE Alu -7 303 6 241 298 46 97 chr1 163773932 163774345 -78890008 - MLT1J LTR MaLR -118 393 2 346 277 48 0 chr1 163774492 163774514 -78889839 - L1MA10 LINE L1 0 6334 6313 3299 213 31 15 chr1 163774514 163775325 -78889028 - L1ME1 LINE L1 -18 6148 5325 647 257 182 16 chr1 163775343 163776180 -78888173 + L1MEd LINE L1 2121 3096 -3033 236 228 217 11 chr1 163776300 163776392 -78887961 + MIR SINE MIR 37 147 -115 558 184 22 151 chr1 163777366 163777551 -78886802 + MIR SINE MIR 100 260 -2 1006 35 0 0 chr1 163777851 163777965 -78886388 - AluYa5/8 SINE Alu -20 290 177 1934 60 0 4 chr1 163778089 163778322 -78886031 - AluY SINE Alu 0 311 80 1843 167 13 0 chr1 163778330 163778630 -78885723 - AluSx SINE Alu -8 304 1 228 143 24 0 chr1 163778944 163778986 -78885367 - Tigger5 DNA MER2_type -238 2085 2043 814 150 0 19 chr1 163779101 163779261 -78885092 + (GGGGA)n Simple_repeat Simple_repeat 4 160 0 343 294 119 8 chr1 163780713 163780839 -78883514 + MIR3 SINE MIR 59 198 -10 735 137 0 0 chr1 163780977 163781079 -78883274 + FLAM_A SINE Alu 25 126 -16 1370 192 27 7 chr1 163781797 163781846 -78882507 + L1MB7 LINE L1 4925 4972 -1182 417 39 0 0 chr1 163781846 163781897 -78882456 + (CA)n Simple_repeat Simple_repeat 2 52 0 1370 192 27 7 chr1 163781897 163782227 -78882126 + L1MB7 LINE L1 4972 5313 -841 1960 161 0 3 chr1 163782237 163782542 -78881811 + AluJb SINE Alu 1 304 -8 696 56 0 0 chr1 163782549 163782638 -78881715 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 801 138 30 36 chr1 163782677 163782844 -78881509 + L1MB7 LINE L1 5319 5484 -690 6103 68 14 26 chr1 163782848 163784578 -78879775 + SVA Other Other 11 1402 0 1560 204 114 46 chr1 163784840 163785059 -78879294 - MER82 DNA MER2_type -16 637 434 1815 155 7 26 chr1 163785059 163785395 -78878958 - AluSx SINE Alu 0 312 1 1560 204 114 46 chr1 163785395 163785424 -78878929 - MER82 DNA MER2_type -219 434 408 1955 93 4 4 chr1 163785424 163785681 -78878672 + AluSc SINE Alu 44 300 -9 1560 204 114 46 chr1 163785681 163785868 -78878485 - MER82 DNA MER2_type -245 408 171 1435 169 191 32 chr1 163785872 163786098 -78878255 + L1MB7 LINE L1 5484 5673 -511 2425 75 0 0 chr1 163786098 163786392 -78877961 + AluY SINE Alu 1 294 -17 1435 169 191 32 chr1 163786392 163786573 -78877780 + L1MB7 LINE L1 5673 5956 -228 1409 151 24 0 chr1 163786624 163786875 -78877478 + L1MB7 LINE L1 5928 6184 0 15534 163 10 30 chr1 163787017 163789822 -78874531 + L1PA11 LINE L1 12 2870 -3619 2167 138 0 0 chr1 163789822 163790127 -78874226 + AluSx SINE Alu 1 305 -7 15534 163 10 30 chr1 163790127 163790844 -78873509 + L1PA11 LINE L1 2870 3599 -2890 1616 5 38 0 chr1 163790844 163791019 -78873334 + L1PA3 LINE L1 5950 6141 -14 15534 163 10 30 chr1 163791019 163793309 -78871044 + L1PA11 LINE L1 3599 5673 -816 1810 131 35 14 chr1 163793309 163793599 -78870754 + AluSx SINE Alu 1 296 -16 15534 163 10 30 chr1 163793599 163794400 -78869953 + L1PA11 LINE L1 5673 6488 -1 27 0 0 0 chr1 163794400 163794427 -78869926 + AT_rich Low_complexity Low_complexity 1 27 0 1584 202 19 19 chr1 163794486 163794793 -78869560 + AluJo SINE Alu 1 307 -5 1252 164 5 0 chr1 163795272 163795480 -78868873 + MER3 DNA MER1_type 1 209 0 23 33 0 0 chr1 163796223 163796253 -78868100 + AT_rich Low_complexity Low_complexity 1 30 0 213 127 16 48 chr1 163797183 163797246 -78867107 + GA-rich Low_complexity Low_complexity 3 63 0 22426 147 22 15 chr1 163797479 163800842 -78863511 + L1M4 LINE L1 17 3356 -4260 1915 112 104 0 chr1 163800842 163801120 -78863233 + AluSx SINE Alu 1 307 -5 22426 147 22 15 chr1 163801120 163804566 -78859787 + L1M4 LINE L1 3356 6873 -743 545 239 28 49 chr1 163804610 163804752 -78859601 + L2 LINE L2 3172 3310 -3 26 64 0 0 chr1 163804986 163805033 -78859320 + AT_rich Low_complexity Low_complexity 1 47 0 325 254 15 0 chr1 163806242 163806309 -78858044 + L2 LINE L2 3197 3264 -8 257 217 120 33 chr1 163806413 163806505 -78857848 + MIR3 SINE MIR 82 181 -27 3298 112 30 11 chr1 163807525 163808099 -78856254 + LTR10C LTR ERV1 1 505 0 596 288 48 19 chr1 163808099 163808370 -78855983 + HERVI LTR ERV1 2 280 -7505 189 0 0 0 chr1 163808370 163808391 -78855962 + (TG)n Simple_repeat Simple_repeat 1 21 0 260 262 22 98 chr1 163808489 163808672 -78855681 + HERVI LTR ERV1 544 712 -5937 2695 145 13 107 chr1 163808892 163809507 -78854846 + HERVI LTR ERV1 3943 4499 -3286 2177 133 0 3 chr1 163809622 163809930 -78854423 + AluSx SINE Alu 3 309 -3 779 196 0 0 chr1 163810065 163810198 -78854155 - FLAM_C SINE Alu 0 133 1 408 293 95 19 chr1 163810205 163810477 -78853876 - L1M4 LINE L1 -2972 3174 2851 2142 135 3 3 chr1 163810477 163810788 -78853565 + AluSx SINE Alu 1 311 -1 408 293 95 19 chr1 163810788 163810979 -78853374 - L1M4 LINE L1 -3295 2851 2676 647 277 16 32 chr1 163811139 163811327 -78853026 - MIR SINE MIR -15 247 63 255 203 0 34 chr1 163811365 163811424 -78852929 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 200 204 0 0 chr1 163811758 163811802 -78852551 + CT-rich Low_complexity Low_complexity 2 45 0 453 238 0 0 chr1 163812535 163812636 -78851717 - U13 snRNA snRNA -3 101 1 287 193 114 50 chr1 163812730 163812870 -78851483 + L1M4 LINE L1 7106 7254 -339 1606 249 98 18 chr1 163812875 163813395 -78850958 + MLT1E LTR MaLR 1 521 -34 301 126 114 6 chr1 163813505 163813672 -78850681 - Harlequin LTR ERV1 -5872 1024 840 9302 202 33 21 chr1 163813672 163815830 -78848523 - Harlequin LTR ERV1 -5198 2587 499 797 208 48 65 chr1 163815897 163816191 -78848162 - Harlequin LTR ERV1 -6360 289 1 1341 219 90 69 chr1 163816200 163816292 -78848061 - LTR10A LTR ERV1 -61 548 459 2349 68 0 7 chr1 163816292 163816587 -78847766 + AluY SINE Alu 11 303 -8 1341 219 90 69 chr1 163816587 163817018 -78847335 - LTR10A LTR ERV1 -150 459 14 8666 256 58 38 chr1 163817129 163820277 -78844076 + HERVI LTR ERV1 4572 7783 -2 3252 120 16 15 chr1 163820281 163820863 -78843490 + LTR10C LTR ERV1 1 505 0 2164 118 3 0 chr1 163820999 163821296 -78843057 - AluSg SINE Alu -10 300 3 24 103 0 0 chr1 163821367 163821454 -78842899 + AT_rich Low_complexity Low_complexity 1 87 0 2217 121 7 0 chr1 163822540 163822838 -78841515 + AluSq SINE Alu 1 300 -13 787 262 23 23 chr1 163823242 163823456 -78840897 - MIR SINE MIR 0 262 49 709 184 179 0 chr1 163824045 163824241 -78840112 - L1ME3A LINE L1 0 6170 5940 724 303 35 9 chr1 163824929 163825160 -78839193 - MIR SINE MIR -16 246 10 1684 156 21 21 chr1 163825626 163825777 -78838576 - AluJo SINE Alu -24 288 135 2118 115 10 0 chr1 163825777 163826065 -78838288 - AluSc SINE Alu -18 291 1 1684 156 21 21 chr1 163826065 163826201 -78838152 - AluJo SINE Alu -176 136 1 446 182 40 0 chr1 163826345 163826444 -78837909 - MLT1-int LTR MaLR -837 534 432 779 211 13 13 chr1 163826672 163826828 -78837525 - MIR SINE MIR -102 160 5 682 290 100 16 chr1 163826857 163827423 -78836930 - L1ME3A LINE L1 -296 5868 5245 268 293 23 15 chr1 163827599 163827732 -78836621 - L1ME3A LINE L1 -1131 5015 4882 36261 85 11 8 chr1 163827936 163834063 -78830290 - L1PA6 LINE L1 -3 6151 12 853 200 76 0 chr1 163834443 163834628 -78829725 - MER58A DNA MER1_type -22 202 4 198 225 0 0 chr1 163835372 163835412 -78828941 - MIR3 SINE MIR -39 169 130 342 0 0 0 chr1 163835469 163835507 -78828846 + (CA)n Simple_repeat Simple_repeat 2 39 0 276 298 29 10 chr1 163835977 163836081 -78828272 + MLT1J LTR MaLR 96 201 -310 367 246 101 22 chr1 163836370 163836508 -78827845 + MER112 DNA MER1_type 103 251 -9 424 202 62 39 chr1 163836603 163836732 -78827621 - MER94 DNA DNA -2 132 1 358 289 213 20 chr1 163837278 163837475 -78826878 + MIR SINE MIR 15 249 -13 180 0 0 0 chr1 163837582 163837602 -78826751 + (CAA)n Simple_repeat Simple_repeat 2 21 0 458 139 0 245 chr1 163837603 163837754 -78826599 - FLAM_A SINE Alu -19 114 1 724 141 131 30 chr1 163838019 163838141 -78826212 - Charlie1 DNA MER1_type 0 2761 2653 1927 159 0 16 chr1 163838141 163838449 -78825904 + AluJo SINE Alu 1 303 -9 724 141 131 30 chr1 163838449 163838525 -78825828 - Charlie1 DNA MER1_type -108 2653 2543 1032 217 141 8 chr1 163838525 163838788 -78825565 + MLT2B1 LTR ERVL 182 479 -41 1873 137 19 22 chr1 163838788 163839109 -78825244 + MER2 DNA MER2_type 1 320 -25 268 139 0 0 chr1 163839112 163839155 -78825198 + MLT2B1 LTR ERVL 471 513 -7 1774 147 32 11 chr1 163839176 163839461 -78824892 - AluJo SINE Alu -21 291 1 2846 143 63 94 chr1 163839463 163839836 -78824517 + Charlie1 DNA MER1_type 1947 2330 -431 2072 129 0 16 chr1 163839836 163840146 -78824207 + AluSg SINE Alu 1 305 -5 2846 143 63 94 chr1 163840146 163840608 -78823745 + Charlie1 DNA MER1_type 2330 2756 -5 207 295 78 115 chr1 163841452 163841774 -78822579 - L2 LINE L2 -69 3203 2894 1240 129 78 4 chr1 163843045 163843277 -78821076 + MER50 LTR ERV1 1 249 -485 2572 149 29 21 chr1 163843748 163844003 -78820350 + MER50 LTR ERV1 225 487 -247 2232 86 0 38 chr1 163844003 163844316 -78820037 + AluY SINE Alu 1 301 -10 2572 149 29 21 chr1 163844316 163844543 -78819810 + MER50 LTR ERV1 487 711 -23 2233 113 0 7 chr1 163845526 163845827 -78818526 - AluSx SINE Alu -13 299 1 590 251 89 77 chr1 163845949 163846184 -78818169 - MIR SINE MIR -18 244 7 1888 161 0 16 chr1 163846424 163846728 -78817625 - AluJb SINE Alu -13 299 1 1460 116 3 110 chr1 163846795 163847168 -78817185 - MER4A LTR ERV1 0 664 261 597 113 21 10 chr1 163847168 163847265 -78817088 - MER4A LTR ERV1 -566 98 1 15271 95 47 45 chr1 163847266 163847745 -78816608 - MER4A-int LTR ERV1 0 6598 6121 2083 139 0 3 chr1 163847745 163848047 -78816306 + AluSx SINE Alu 1 301 -11 15271 95 47 45 chr1 163848047 163849217 -78815136 - MER4A-int LTR ERV1 -477 6121 4890 321 78 20 0 chr1 163849217 163849268 -78815085 + Alu SINE Alu 248 299 -1 15271 95 47 45 chr1 163849268 163850325 -78814028 - MER4A-int LTR ERV1 -1708 4890 3836 1107 161 37 82 chr1 163850323 163850503 -78813850 - MER4A-int LTR ERV1 -2917 3681 3494 * 12926 86 87 1 chr1 163850503 163853066 -78811287 + L1PA8 LINE L1 3507 6169 -3 3307 75 10 38 chr1 163853066 163853545 -78810808 + L1PA7 LINE L1 5675 6141 -13 1107 161 37 82 chr1 163853545 163853718 -78810635 - MER4A-int LTR ERV1 -3102 3496 3343 5100 133 78 37 chr1 163853738 163854184 -78810169 - MER4A-int LTR ERV1 -4321 2937 2511 2379 98 0 0 chr1 163854184 163854479 -78809874 + AluSc SINE Alu 1 295 -14 5100 133 78 37 chr1 163854479 163855099 -78809254 - MER4A-int LTR ERV1 -4747 2511 1918 351 0 0 0 chr1 163855099 163855138 -78809215 + (CA)n Simple_repeat Simple_repeat 2 40 0 5100 133 78 37 chr1 163855138 163855249 -78809104 - MER4A-int LTR ERV1 -5340 1918 1161 393 94 0 76 chr1 163855255 163855398 -78808955 - MER4A-int LTR ERV1 -5712 886 687 3099 89 182 6 chr1 163855402 163855847 -78808506 - MER4A-int LTR ERV1 -5778 820 455 207 0 0 0 chr1 163855847 163855870 -78808483 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3099 89 182 6 chr1 163855870 163856065 -78808288 - MER4A-int LTR ERV1 -6143 455 1 803 118 0 0 chr1 163856068 163856187 -78808166 - MER4A LTR ERV1 0 664 546 1587 212 97 39 chr1 163856199 163856717 -78807636 - LTR10A LTR ERV1 -61 548 1 11182 157 11 22 chr1 163856720 163859897 -78804456 - Harlequin LTR ERV1 -4 6645 1806 317 213 175 0 chr1 163859898 163859978 -78804375 + LTR8 LTR ERV1 160 253 -438 830 63 8 16 chr1 163859984 163860111 -78804242 - Harlequin LTR ERV1 -5187 1709 1584 * 3026 114 61 36 chr1 163860088 163860924 -78803429 - Harlequin LTR ERV1 -3380 4405 864 588 200 17 0 chr1 163860943 163861118 -78803235 + CT-rich Low_complexity Low_complexity 2 179 0 40945 45 8 1 chr1 163911486 163917594 -78746759 + L1PA4 LINE L1 5 6152 -3 34 0 0 0 chr1 163917595 163917629 -78746724 + AT_rich Low_complexity Low_complexity 1 34 0 2236 98 0 7 chr1 163917637 163917932 -78746421 + AluSc SINE Alu 1 293 -16 570 163 101 39 chr1 163917935 163918064 -78746289 + FLAM_A SINE Alu 6 142 0 1886 150 38 7 chr1 163918743 163919036 -78745317 - AluSx SINE Alu -10 302 1 829 196 0 0 chr1 163919187 163919320 -78745033 + FLAM_C SINE Alu 1 133 -10 24 0 0 0 chr1 163920236 163920260 -78744093 + AT_rich Low_complexity Low_complexity 1 24 0 514 261 75 53 chr1 163920469 163920657 -78743696 - L2 LINE L2 -2 3311 3120 349 358 34 56 chr1 163920709 163920885 -78743468 - L2 LINE L2 -361 2953 2784 2041 131 0 16 chr1 163920885 163921190 -78743163 + AluJb SINE Alu 1 300 -12 349 358 34 56 chr1 163921190 163921281 -78743072 - L2 LINE L2 -530 2784 2692 10211 161 16 34 chr1 163921339 163921658 -78742695 - L1PB1 LINE L1 -12 6855 6532 2139 114 0 41 chr1 163921658 163921975 -78742378 - AluSx SINE Alu -8 304 1 10211 161 16 34 chr1 163921975 163922315 -78742038 - L1PB1 LINE L1 -335 6532 6187 2451 76 0 7 chr1 163922315 163922617 -78741736 - AluSx SINE Alu -12 300 1 10211 161 16 34 chr1 163922617 163923968 -78740385 - L1PB1 LINE L1 -680 6187 4813 1471 148 0 5 chr1 163923968 163924191 -78740162 - AluJb SINE Alu -90 222 1 10211 161 16 34 chr1 163924191 163924802 -78739551 - L1PB1 LINE L1 -2054 4813 4193 1949 134 7 3 chr1 163924802 163925093 -78739260 - AluSx SINE Alu -20 292 1 10211 161 16 34 chr1 163925093 163925368 -78738985 - L1PB1 LINE L1 -2674 4193 3915 2273 82 41 3 chr1 163925368 163925661 -78738692 - AluSq SINE Alu -9 304 1 10211 161 16 34 chr1 163925661 163925833 -78738520 - L1PB1 LINE L1 -2952 3915 3741 2318 67 40 7 chr1 163925833 163926130 -78738223 - AluY SINE Alu -4 307 1 10211 161 16 34 chr1 163926130 163926446 -78737907 - L1PB1 LINE L1 -3126 3741 3531 3432 122 72 5 chr1 163926445 163927058 -78737295 - L1PB1 LINE L1 -6207 656 3 * 462 325 24 29 chr1 163927116 163927362 -78736991 + L1MC4 LINE L1 4994 5238 -908 926 251 129 18 chr1 163927778 163928104 -78736249 + L1MC4 LINE L1 5299 5660 -2148 243 296 23 0 chr1 163928317 163928405 -78735948 + L1MC4 LINE L1 6614 6703 -1339 336 248 0 0 chr1 163928407 163928508 -78735845 + (TA)n Simple_repeat Simple_repeat 2 102 0 412 261 72 69 chr1 163928622 163928962 -78735391 + L1MC/D LINE L1 5127 5471 -743 523 278 30 5 chr1 163928973 163929171 -78735182 - L1MC4 LINE L1 -2 8040 7838 377 210 171 45 chr1 163929229 163929405 -78734948 - L1MC4 LINE L1 -851 7191 6994 2140 282 107 51 chr1 163929409 163930880 -78733473 - L1MC4 LINE L1 -747 5399 4012 2188 116 30 0 chr1 163930880 163931183 -78733170 - AluSx SINE Alu 0 312 1 2140 282 107 51 chr1 163931183 163931596 -78732757 - L1MC4 LINE L1 -2134 4012 3624 758 101 0 0 chr1 163931596 163931695 -78732658 + AluSg/x SINE Alu 196 294 -18 2140 282 107 51 chr1 163931695 163933401 -78730952 - L1MC4 LINE L1 -2522 3624 2110 1368 229 93 15 chr1 163933526 163934171 -78730182 + L1M4 LINE L1 3067 3809 -2337 432 294 33 17 chr1 163934194 163934374 -78729979 + MARNA DNA Mariner 220 402 -184 734 46 0 0 chr1 163934382 163934469 -78729884 + L1PA3 LINE L1 6056 6142 -13 460 208 10 0 chr1 163934506 163934607 -78729746 + L1ME2 LINE L1 6021 6122 -42 394 130 52 0 chr1 163935673 163935750 -78728603 - MER53 DNA DNA -1 188 108 189 0 0 0 chr1 163936017 163936038 -78728315 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 657 224 7 40 chr1 163936045 163936197 -78728156 - AluJb SINE Alu -32 280 134 910 125 0 0 chr1 163936197 163936325 -78728028 - AluSg/x SINE Alu -3 309 182 1244 189 0 52 chr1 163936348 163936581 -78727772 - AluJo SINE Alu -91 221 1 27 0 0 0 chr1 163936594 163936621 -78727732 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr1 163937213 163937256 -78727097 + AT_rich Low_complexity Low_complexity 1 43 0 2344 92 0 0 chr1 163937676 163937969 -78726384 + AluSc SINE Alu 1 293 -16 1643 183 7 17 chr1 163938607 163938896 -78725457 + AluJb SINE Alu 1 286 -26 2365 91 10 0 chr1 163940025 163940323 -78724030 + AluSp SINE Alu 1 301 -12 685 232 0 21 chr1 163940528 163940670 -78723683 + MIR SINE MIR 103 241 -21 2381 81 0 3 chr1 163940774 163941070 -78723283 - AluSc SINE Alu -6 303 9 1540 152 105 14 chr1 163941994 163942270 -78722083 + AluJo SINE Alu 1 301 -11 206 318 15 106 chr1 163943017 163943215 -78721138 + L2 LINE L2 2796 2975 -339 1248 115 0 0 chr1 163943236 163943410 -78720943 + AluY SINE Alu 133 306 -5 1307 162 9 5 chr1 163943801 163944011 -78720342 + AluJb SINE Alu 94 304 -8 13898 193 39 12 chr1 163944087 163950577 -78713776 + L1PB1 LINE L1 6 6846 -21 326 299 145 74 chr1 163950906 163950942 -78713411 + L1ME4a LINE L1 5572 5604 -517 2395 68 0 0 chr1 163950942 163951237 -78713116 + AluY SINE Alu 1 295 -16 326 299 145 74 chr1 163951237 163951594 -78712759 + L1ME4a LINE L1 5604 5993 -128 1819 131 52 39 chr1 163952083 163952388 -78711965 + AluJb SINE Alu 1 309 -3 5838 128 37 2 chr1 163952507 163953659 -78710694 - L1MA8 LINE L1 -2 6289 5097 723 52 43 26 chr1 163954376 163954491 -78709862 + L1MB2 LINE L1 6054 6170 -1 1082 157 27 5 chr1 163954804 163954989 -78709364 - MER20 DNA MER1_type -1 218 30 1952 149 27 0 chr1 163955227 163955522 -78708831 + AluJo SINE Alu 1 303 -9 576 86 0 0 chr1 163955527 163955608 -78708745 + L1MA1 LINE L1 6194 6274 -28 673 322 58 16 chr1 163956121 163956136 -78708217 + HAL1b LINE L1 64 77 -1271 2027 119 61 0 chr1 163956136 163956431 -78707922 + AluSq SINE Alu 1 313 0 673 322 58 16 chr1 163956431 163956928 -78707425 + HAL1b LINE L1 77 598 -750 861 191 0 14 chr1 163956988 163957135 -78707218 + FRAM SINE Alu 11 155 -21 1418 210 10 42 chr1 163957194 163957503 -78706850 + AluJo SINE Alu 1 299 -13 1390 224 124 106 chr1 163957816 163958692 -78705661 + L1MC5 LINE L1 6626 7517 -444 1524 151 56 39 chr1 163958707 163958992 -78705361 - AluJo SINE Alu -22 290 1 712 147 18 0 chr1 163959022 163959131 -78705222 + FLAM_C SINE Alu 1 111 -32 191 61 30 0 chr1 163959137 163959170 -78705183 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr1 163959170 163959191 -78705162 + AT_rich Low_complexity Low_complexity 1 21 0 2418 75 0 3 chr1 163959452 163959758 -78704595 + AluY SINE Alu 1 305 -6 1960 168 0 0 chr1 163960527 163960831 -78703522 - AluJb SINE Alu -8 304 1 360 306 166 0 chr1 163960998 163961155 -78703198 - MIR3 SINE MIR -10 198 16 12145 147 28 10 chr1 163961573 163963786 -78700567 - L1M1 LINE L1 -553 5752 3580 1575 57 18 31 chr1 163963786 163964014 -78700339 - L1PA6 LINE L1 0 6154 5930 12145 147 28 10 chr1 163964014 163964051 -78700302 - L1M1 LINE L1 -2725 3580 3545 1755 169 0 32 chr1 163964051 163964359 -78699994 - AluJb SINE Alu -14 298 1 12145 147 28 10 chr1 163964359 163964934 -78699419 - L1M1 LINE L1 -2760 3545 2876 2341 121 0 0 chr1 163965064 163965371 -78698982 - AluSx SINE Alu -5 307 1 234 404 105 0 chr1 163965923 163966037 -78698316 - L2 LINE L2 -31 3241 3116 1613 178 14 21 chr1 163966218 163966446 -78697907 + AluJb SINE Alu 1 228 -84 1456 119 5 5 chr1 163966446 163966656 -78697697 - AluSg/x SINE Alu -8 304 95 1613 178 14 21 chr1 163966656 163966708 -78697645 + AluJb SINE Alu 228 279 -33 307 127 32 0 chr1 163966708 163966771 -78697582 + GA-rich Low_complexity Low_complexity 1 65 0 194 326 57 78 chr1 163966785 163967030 -78697323 - L2 LINE L2 -337 2977 2738 1695 142 8 4 chr1 163967047 163967301 -78697052 - AluJb SINE Alu -23 289 35 776 167 0 14 chr1 163967343 163967487 -78696866 - FLAM_C SINE Alu -1 142 1 485 261 96 0 chr1 163968200 163968315 -78696038 - MIR SINE MIR -55 153 28 24 53 0 0 chr1 163968382 163968420 -78695933 + AT_rich Low_complexity Low_complexity 1 38 0 260 236 124 34 chr1 163969281 163969305 -78695048 - L2 LINE L2 -5 3308 3288 2265 99 3 0 chr1 163969305 163969599 -78694754 + AluSx SINE Alu 1 295 -17 260 236 124 34 chr1 163969599 163969663 -78694690 - L2 LINE L2 -25 3288 3212 1099 121 0 0 chr1 163969665 163969822 -78694531 + AluSg/x SINE Alu 148 304 -6 392 274 157 20 chr1 163969824 163970021 -78694332 - L2 LINE L2 -94 3219 2996 469 300 84 26 chr1 163972616 163972806 -78691547 - MIR3 SINE MIR -6 202 2 560 193 42 61 chr1 163974086 163974102 -78690251 + L1MC5 LINE L1 7323 7338 -623 4121 188 119 62 chr1 163974102 163974157 -78690196 + Charlie1a DNA MER1_type 2 52 -2709 2484 59 3 7 chr1 163974157 163974464 -78689889 - AluSp SINE Alu -2 311 6 4121 188 119 62 chr1 163974464 163974515 -78689838 + Charlie1a DNA MER1_type 52 99 -2662 2372 53 0 17 chr1 163974515 163974817 -78689536 - AluY SINE Alu -14 297 1 4121 188 119 62 chr1 163974817 163975028 -78689325 + Charlie1a DNA MER1_type 99 296 -2465 2088 123 0 0 chr1 163975028 163975321 -78689032 - AluSx SINE Alu -19 293 1 4121 188 119 62 chr1 163975321 163976207 -78688146 + Charlie1a DNA MER1_type 296 1298 -1463 2042 130 17 3 chr1 163976207 163976500 -78687853 + AluSx SINE Alu 1 297 -15 4121 188 119 62 chr1 163976500 163976668 -78687685 + Charlie1a DNA MER1_type 1298 1455 0 560 193 42 61 chr1 163976668 163976863 -78687490 + L1MC5 LINE L1 7338 7530 -431 613 162 15 66 chr1 163976865 163977001 -78687352 + AluJ SINE Alu 1 129 -183 234 130 65 8 chr1 163977001 163977124 -78687229 + (TA)n Simple_repeat Simple_repeat 1 130 0 647 201 149 0 chr1 163977126 163977260 -78687093 + AluJ SINE Alu 136 289 -23 698 158 0 16 chr1 163977268 163977395 -78686958 + 7SK RNA RNA 1 125 -68 421 178 0 0 chr1 163977433 163977506 -78686847 + 7SK RNA RNA 121 193 0 246 297 81 54 chr1 163977766 163977988 -78686365 - L2 LINE L2 -237 3035 2808 515 221 22 77 chr1 163978068 163978186 -78686167 + MLT1F LTR MaLR 8 114 -428 845 132 0 7 chr1 163978186 163978322 -78686031 + L1MC1 LINE L1 6198 6332 -1 515 221 22 77 chr1 163978322 163978384 -78685969 + MLT1F LTR MaLR 114 178 -364 581 182 105 74 chr1 163978448 163978588 -78685765 - L1MC5 LINE L1 -87 7874 7721 2235 123 17 23 chr1 163978588 163978937 -78685416 + MER7A DNA MER2_type 2 346 0 581 182 105 74 chr1 163978937 163979054 -78685299 - L1MC5 LINE L1 -240 7721 7609 1770 62 0 26 chr1 163979273 163979499 -78684854 + AluY SINE Alu 83 302 -9 1002 229 89 94 chr1 163979663 163980278 -78684075 - L1MC5 LINE L1 -735 7226 6615 2827 241 121 19 chr1 163980281 163981449 -78682904 + L1 LINE L1 3885 5171 -975 1836 140 4 4 chr1 163981565 163981830 -78682523 - AluSx SINE Alu -47 265 1 1203 163 127 65 chr1 163982040 163982316 -78682037 + AluJo SINE Alu 1 293 -9 1748 158 0 45 chr1 163982322 163982632 -78681721 + AluJb SINE Alu 1 296 -16 1792 164 24 3 chr1 163982672 163982965 -78681388 + AluJo SINE Alu 1 299 -13 1320 273 123 19 chr1 163982968 163983617 -78680736 - L1MC4a LINE L1 -1547 6261 5545 487 299 60 5 chr1 163983617 163983801 -78680552 + L2 LINE L2 2620 2813 -501 1118 266 16 63 chr1 163983815 163984307 -78680046 - MLT1J LTR MaLR 0 511 43 1061 277 124 12 chr1 163984354 163984765 -78679588 + L2 LINE L2 2857 3313 0 219 221 52 52 chr1 163984970 163985047 -78679306 + MIR3 SINE MIR 89 165 -43 190 276 118 40 chr1 163985057 163985133 -78679220 - L2 LINE L2 -36 3236 3155 2161 139 7 0 chr1 163985569 163985879 -78678474 - AluSx SINE Alu 0 312 1 1764 183 0 30 chr1 163986385 163986686 -78677667 + AluJo SINE Alu 1 292 -20 228 281 97 0 chr1 163986691 163986805 -78677548 + MER112 DNA MER1_type 136 260 0 268 289 67 60 chr1 163986805 163986954 -78677399 + MIR SINE MIR 15 164 -98 2237 112 3 0 chr1 163986956 163987251 -78677102 + AluSg SINE Alu 3 298 -12 2241 129 3 0 chr1 163987258 163987567 -78676786 + AluSx SINE Alu 1 310 -2 1228 156 0 0 chr1 163987579 163987759 -78676594 + AluSg/x SINE Alu 118 297 -13 2486 57 0 3 chr1 163987927 163988225 -78676128 - AluY SINE Alu -14 297 1 2256 112 0 0 chr1 163989397 163989691 -78674662 - AluSx SINE Alu -18 294 1 702 288 257 43 chr1 163989861 163990772 -78673581 - L3 LINE CR1 -115 1462 357 1759 159 24 0 chr1 163990956 163991246 -78673107 + AluSg SINE Alu 1 297 -13 451 317 28 40 chr1 163991370 163991619 -78672734 + MLT1J LTR MaLR 224 469 -42 1339 195 0 0 chr1 163991672 163991893 -78672460 - MER58A DNA MER1_type 0 224 4 1929 152 7 0 chr1 163992023 163992329 -78672024 + AluJo SINE Alu 1 308 0 891 156 0 7 chr1 163992407 163992542 -78671811 - AluJo SINE Alu -178 134 1 944 247 121 41 chr1 163993396 163993736 -78670617 + L2 LINE L2 2932 3298 -15 2258 101 0 13 chr1 163993845 163994143 -78670210 + AluSg SINE Alu 1 294 -16 667 76 0 159 chr1 163994208 163994340 -78670013 + HY1 scRNA scRNA 1 111 -1 5368 85 2 16 chr1 163994432 163994778 -78669575 + L1PA12 LINE L1 4965 5314 -854 2207 79 0 7 chr1 163994778 163995057 -78669296 + AluSx SINE Alu 1 277 -35 1757 142 0 24 chr1 163995057 163995345 -78669008 + AluSx SINE Alu 32 312 0 5368 85 2 16 chr1 163995345 163996258 -78668095 + L1PA12 LINE L1 5312 6168 0 2251 78 17 7 chr1 163996358 163996652 -78667701 + AluY SINE Alu 1 297 -14 39068 80 7 10 chr1 163997417 164002577 -78661776 + L1PA6 LINE L1 11 5150 -1004 2245 111 3 3 chr1 164002577 164002884 -78661469 + AluSg SINE Alu 1 307 -3 39068 80 7 10 chr1 164002884 164003886 -78660467 + L1PA6 LINE L1 5150 6154 0 23 33 0 0 chr1 164003886 164003916 -78660437 + AT_rich Low_complexity Low_complexity 1 30 0 1749 170 17 7 chr1 164004672 164004972 -78659381 + AluJb SINE Alu 1 303 -9 2023 124 7 10 chr1 164005027 164005326 -78659027 + AluSx SINE Alu 1 298 -14 1915 104 20 61 chr1 164005403 164005722 -78658631 - AluSq SINE Alu 0 307 1 21 36 0 0 chr1 164005723 164005751 -78658602 + AT_rich Low_complexity Low_complexity 1 28 0 1281 176 19 5 chr1 164005754 164005964 -78658389 - MER46A DNA MER2_type 0 236 24 1033 156 70 11 chr1 164006046 164006232 -78658121 + AluJo SINE Alu 85 281 -31 1795 167 144 3 chr1 164006333 164006710 -78657643 + L1MD2 LINE L1 5681 6109 -250 925 224 82 4 chr1 164006846 164007078 -78657275 - MIR SINE MIR 0 262 13 1135 114 30 6 chr1 164007524 164007691 -78656662 - AluJb SINE Alu -6 306 136 2192 99 3 7 chr1 164008464 164008757 -78655596 - AluSx SINE Alu -20 292 1 2361 46 0 23 chr1 164011151 164011488 -78652865 - AluY SINE Alu 0 311 1 2467 44 0 7 chr1 164011660 164011958 -78652395 + AluY SINE Alu 1 296 -15 2100 101 0 11 chr1 164013087 164013365 -78650988 + AluSg SINE Alu 21 295 -15 1644 267 92 50 chr1 164014270 164014924 -78649429 + L1MC4a LINE L1 5296 5994 -1814 234 0 0 0 chr1 164014924 164014950 -78649403 + (TG)n Simple_repeat Simple_repeat 2 27 0 1644 267 92 50 chr1 164014950 164015130 -78649223 + L1MC4a LINE L1 5994 6165 -1643 28 0 0 0 chr1 164015186 164015214 -78649139 + AT_rich Low_complexity Low_complexity 1 28 0 1721 152 24 14 chr1 164015217 164015346 -78649007 + AluJb SINE Alu 1 127 -185 2181 111 3 7 chr1 164015346 164015652 -78648701 + AluSg SINE Alu 1 305 -5 1721 152 24 14 chr1 164015652 164015812 -78648541 + AluJb SINE Alu 127 293 -19 2137 103 0 0 chr1 164016662 164016934 -78647419 - AluSc SINE Alu -37 272 1 688 179 34 0 chr1 164016935 164017052 -78647301 - FLAM_A SINE Alu -10 132 12 2414 97 0 0 chr1 164018208 164018517 -78645836 + AluSg SINE Alu 1 309 -1 884 146 0 8 chr1 164018630 164018753 -78645600 - FLAM_A SINE Alu -10 123 2 23 33 0 0 chr1 164019049 164019079 -78645274 + AT_rich Low_complexity Low_complexity 1 30 0 1665 195 27 7 chr1 164019484 164019781 -78644572 - AluJo SINE Alu -9 303 1 264 30 0 0 chr1 164020444 164020477 -78643876 + (T)n Simple_repeat Simple_repeat 1 33 0 2151 113 7 10 chr1 164020490 164020791 -78643562 - AluSx SINE Alu -2 310 11 207 0 0 0 chr1 164020842 164020865 -78643488 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1681 83 5 9 chr1 164020892 164021110 -78643243 - AluSx SINE Alu -95 217 1 729 128 35 92 chr1 164021141 164021282 -78643071 + FLAM_C SINE Alu 1 133 0 1904 137 0 52 chr1 164021345 164021491 -78642862 + AluSx SINE Alu 1 124 -188 2284 104 0 10 chr1 164021491 164021788 -78642565 + AluSx SINE Alu 1 294 -18 1904 137 0 52 chr1 164021788 164021948 -78642405 + AluSx SINE Alu 124 291 -21 21 0 0 0 chr1 164021948 164021969 -78642384 + AT_rich Low_complexity Low_complexity 1 21 0 2339 74 0 13 chr1 164021979 164022277 -78642076 + AluSg SINE Alu 1 294 -16 2261 99 0 7 chr1 164023490 164023792 -78640561 - AluSg SINE Alu -10 300 1 289 164 218 0 chr1 164024190 164024245 -78640108 - U6 snRNA snRNA -39 68 2 25 51 0 0 chr1 164024342 164024381 -78639972 + AT_rich Low_complexity Low_complexity 1 39 0 1972 117 0 7 chr1 164024432 164024754 -78639599 - AluSc SINE Alu 0 320 1 303 370 11 8 chr1 164024784 164024968 -78639385 + MIR SINE MIR 20 247 -15 2075 119 24 0 chr1 164025956 164026251 -78638102 - AluSx SINE Alu -10 302 1 791 243 109 5 chr1 164026265 164026467 -78637886 + MIR SINE MIR 29 251 -11 2241 108 0 7 chr1 164026813 164027109 -78637244 + AluSq SINE Alu 2 295 -18 1522 195 50 0 chr1 164027250 164027527 -78636826 + AluJo SINE Alu 1 291 -21 213 315 14 0 chr1 164027721 164027794 -78636559 + GA-rich Low_complexity Low_complexity 2 75 0 2470 85 0 13 chr1 164028006 164028322 -78636031 - AluSx SINE Alu 0 312 1 2169 123 3 3 chr1 164028376 164028677 -78635676 + AluSq SINE Alu 2 302 -11 2232 104 0 3 chr1 164028998 164029295 -78635058 + AluSg SINE Alu 1 296 -14 2420 100 0 0 chr1 164030108 164030419 -78633934 + AluSx SINE Alu 2 312 0 2256 121 3 3 chr1 164030501 164030814 -78633539 - AluSq SINE Alu 0 313 1 864 225 0 6 chr1 164031141 164031310 -78633043 - AluJb SINE Alu -3 309 142 808 183 7 0 chr1 164031319 164031456 -78632897 + AluJb SINE Alu 154 291 -21 1056 105 0 0 chr1 164031459 164031592 -78632761 + AluSq/x SINE Alu 1 133 -179 2445 64 0 3 chr1 164031595 164031892 -78632461 + AluY SINE Alu 1 296 -15 1473 153 16 100 chr1 164031903 164032224 -78632129 + AluJo SINE Alu 2 295 -17 1956 146 0 10 chr1 164032230 164032532 -78631821 + AluJo SINE Alu 1 299 -13 226 234 88 35 chr1 164032574 164032745 -78631608 + L1ME4a LINE L1 5768 5947 -174 22 35 0 0 chr1 164033035 164033064 -78631289 + AT_rich Low_complexity Low_complexity 1 29 0 640 240 187 34 chr1 164033523 164033564 -78630789 - HAL1 LINE L1 -643 1864 1831 2482 55 0 7 chr1 164033564 164033872 -78630481 - AluY SINE Alu -5 306 1 640 240 187 34 chr1 164033872 164034097 -78630256 - HAL1 LINE L1 -676 1831 1557 897 214 12 0 chr1 164034098 164034271 -78630082 + MER3 DNA MER1_type 2 129 -80 987 265 164 34 chr1 164034292 164034971 -78629382 - HAL1 LINE L1 -943 1564 798 2276 101 7 0 chr1 164034971 164035268 -78629085 + AluSx SINE Alu 1 299 -13 1905 141 41 0 chr1 164035581 164035871 -78628482 - AluSx SINE Alu -10 302 1 2165 114 3 7 chr1 164036325 164036624 -78627729 - AluSx SINE Alu -14 298 1 2175 100 0 36 chr1 164036675 164036984 -78627369 + AluSx SINE Alu 1 298 -14 1032 259 17 0 chr1 164037979 164038215 -78626138 - MIR SINE MIR -4 258 19 2356 82 7 10 chr1 164038215 164038518 -78625835 - AluSg SINE Alu -4 306 5 187 289 0 0 chr1 164038558 164038603 -78625750 - MIR SINE MIR 0 262 218 319 234 269 42 chr1 164038684 164038851 -78625502 - MIR SINE MIR -52 210 6 1535 190 28 3 chr1 164039707 164039996 -78624357 - AluJo SINE Alu -16 296 1 30 27 0 0 chr1 164040098 164040135 -78624218 + AT_rich Low_complexity Low_complexity 1 37 0 461 274 62 14 chr1 164040227 164040373 -78623980 - MIR SINE MIR -98 164 12 2340 88 7 0 chr1 164040825 164041121 -78623232 - AluSx SINE Alu -14 298 1 183 42 0 0 chr1 164041175 164041199 -78623154 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 708 148 10 0 chr1 164041208 164041309 -78623044 - FRAM SINE Alu -31 145 44 1843 137 31 27 chr1 164041388 164041680 -78622673 - AluSx SINE Alu -19 293 1 531 264 16 50 chr1 164041712 164041894 -78622459 + MER5B DNA MER1_type 2 177 -1 237 289 101 19 chr1 164041954 164042113 -78622240 + L2 LINE L2 1915 2086 -1228 21 0 0 0 chr1 164042599 164042620 -78621733 + AT_rich Low_complexity Low_complexity 1 21 0 213 287 22 83 chr1 164043980 164044161 -78620192 + MIR SINE MIR 82 251 -11 2167 123 7 0 chr1 164044302 164044602 -78619751 + AluSx SINE Alu 1 302 -10 2265 116 0 0 chr1 164044772 164045065 -78619288 + AluSc SINE Alu 1 293 -16 921 93 0 0 chr1 164045152 164045270 -78619083 - AluSg/x SINE Alu -18 292 175 21 36 0 0 chr1 164045270 164045298 -78619055 + AT_rich Low_complexity Low_complexity 1 28 0 4433 141 76 31 chr1 164045305 164045362 -78618991 - Charlie1 DNA MER1_type -133 2628 2575 2104 132 0 7 chr1 164045362 164045666 -78618687 - AluSx SINE Alu -10 302 1 4433 141 76 31 chr1 164045666 164046598 -78617755 - Charlie1 DNA MER1_type -186 2575 1603 1641 159 3 41 chr1 164046649 164046939 -78617414 - AluJo SINE Alu -22 290 12 2347 80 7 3 chr1 164047025 164047324 -78617029 + AluSg SINE Alu 1 300 -10 1384 170 0 25 chr1 164047332 164047567 -78616786 + AluSx SINE Alu 1 229 -83 895 120 167 13 chr1 164047567 164047717 -78616636 - AluSg/x SINE Alu -68 241 69 2082 112 18 3 chr1 164047985 164048270 -78616083 - AluSg SINE Alu -21 289 1 1573 138 24 4 chr1 164048270 164048516 -78615837 - AluSx SINE Alu -16 296 46 980 145 51 37 chr1 164048744 164048981 -78615372 + AluSq SINE Alu 1 296 -17 608 167 114 0 chr1 164049702 164049816 -78614537 + FRAM SINE Alu 34 160 -16 1639 131 91 7 chr1 164050656 164050930 -78613423 + AluSx SINE Alu 1 297 -15 1887 130 27 3 chr1 164052956 164053248 -78611105 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr1 164055107 164055128 -78609225 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 164056871 164056891 -78607462 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 2156 91 0 18 chr1 164057779 164058092 -78606261 - AluY SINE Alu 0 308 1 758 161 0 0 chr1 164058095 164058207 -78606146 - AluSg/x SINE Alu -15 295 184 660 115 31 0 chr1 164058318 164058414 -78605939 + L1PB1 LINE L1 6050 6148 -3 2209 118 3 0 chr1 164058445 164058741 -78605612 + AluSx SINE Alu 1 297 -15 350 308 0 0 chr1 164059439 164059543 -78604810 + L1M4 LINE L1 3656 3759 -2387 808 272 57 89 chr1 164059551 164059693 -78604660 + L1M4 LINE L1 3824 3969 -2177 2371 82 3 0 chr1 164059693 164059997 -78604356 + AluSp SINE Alu 1 305 -8 808 272 57 89 chr1 164059997 164060058 -78604295 + L1M4 LINE L1 3969 4030 -2116 2354 55 0 55 chr1 164060058 164060370 -78603983 - AluY SINE Alu -16 295 1 808 272 57 89 chr1 164060370 164060602 -78603751 + L1M4 LINE L1 4030 4246 -1900 414 57 0 0 chr1 164060836 164060889 -78603464 + (TG)n Simple_repeat Simple_repeat 2 54 0 260 160 64 21 chr1 164060889 164060977 -78603376 + (CTATA)n Simple_repeat Simple_repeat 5 96 0 189 147 0 0 chr1 164061016 164061050 -78603303 + (TA)n Simple_repeat Simple_repeat 1 34 0 2208 101 7 3 chr1 164061050 164061346 -78603007 - AluSx SINE Alu -15 297 1 1619 191 0 17 chr1 164061379 164061678 -78602675 - AluJb SINE Alu -18 294 1 2190 124 0 0 chr1 164062046 164062337 -78602016 - AluSx SINE Alu -21 291 1 1672 160 56 82 chr1 164062545 164062901 -78601452 - MER7A DNA MER2_type -1 345 1 1552 160 11 8 chr1 164063089 164063351 -78601002 - AluJb SINE Alu 0 312 50 302 238 16 0 chr1 164063379 164063442 -78600911 - AluJb SINE Alu -238 64 1 226 257 112 33 chr1 164063464 164063616 -78600737 + L3b LINE CR1 1248 1411 -172 190 241 69 0 chr1 164063996 164064054 -78600299 + L2 LINE L2 3159 3220 -93 2218 104 0 23 chr1 164064521 164064829 -78599524 + AluSq SINE Alu 1 301 -12 2108 111 10 0 chr1 164065389 164065677 -78598676 + AluSx SINE Alu 1 291 -21 181 274 226 29 chr1 164066236 164066338 -78598015 - L2 LINE L2 -4 3309 3188 7815 40 0 41 chr1 164066674 164067492 -78596861 - L1PA5 LINE L1 0 6154 5304 2381 84 0 0 chr1 164067492 164067789 -78596564 + AluY SINE Alu 1 297 -14 7815 40 0 41 chr1 164067789 164067953 -78596400 - L1PA5 LINE L1 -850 5304 5135 2518 75 3 0 chr1 164067953 164068259 -78596094 - AluY SINE Alu -4 307 1 7815 40 0 41 chr1 164068259 164068563 -78595790 - L1PA5 LINE L1 -1019 5135 4889 664 245 128 5 chr1 164068652 164068840 -78595513 - MIR SINE MIR -51 211 1 2168 87 31 3 chr1 164068916 164069204 -78595149 + AluSp SINE Alu 1 296 -17 1812 171 0 20 chr1 164069873 164070177 -78594176 - AluJb SINE Alu -14 298 1 784 159 45 94 chr1 164070497 164070671 -78593682 - MER3 DNA MER1_type -18 191 27 1705 181 20 3 chr1 164070671 164070964 -78593389 + AluJb SINE Alu 1 298 -14 784 159 45 94 chr1 164070964 164070990 -78593363 - MER3 DNA MER1_type -182 27 1 1637 191 9 19 chr1 164074134 164074449 -78589904 - AluJo SINE Alu 0 312 1 924 137 15 0 chr1 164075749 164075880 -78588473 - FLAM_A SINE Alu 0 133 1 908 264 18 9 chr1 164076408 164076628 -78587725 + MER58A DNA MER1_type 1 222 -2 689 213 31 8 chr1 164077366 164077493 -78586860 + FLAM_A SINE Alu 1 130 -3 2058 142 0 0 chr1 164078627 164078922 -78585431 - AluSx SINE Alu -17 295 1 648 197 56 7 chr1 164079382 164079524 -78584829 - MIR SINE MIR 0 262 114 304 273 227 8 chr1 164079556 164079688 -78584665 - MIR SINE MIR -100 162 2 964 226 168 99 chr1 164079935 164080298 -78584055 - MLT1H1 LTR MaLR -1 554 202 268 245 45 0 chr1 164080415 164080506 -78583847 - MLT1G3 LTR MaLR -468 62 8 185 0 40 0 chr1 164080514 164080539 -78583814 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2078 144 3 0 chr1 164080817 164081122 -78583231 - AluJb SINE Alu -6 306 1 21 36 0 0 chr1 164082695 164082723 -78581630 + AT_rich Low_complexity Low_complexity 1 28 0 660 146 0 92 chr1 164083846 164083898 -78580455 - FLAM_C SINE Alu -184 118 63 2350 93 3 3 chr1 164083898 164084198 -78580155 + AluSq SINE Alu 1 300 -13 660 146 0 92 chr1 164084198 164084275 -78580078 - FLAM_C SINE Alu -239 63 1 410 177 387 0 chr1 164085305 164085429 -78578924 - MER5B DNA MER1_type -5 173 2 2051 113 41 3 chr1 164087119 164087412 -78576941 - AluJo SINE Alu -8 304 1 233 125 42 21 chr1 164090458 164090506 -78573847 + CT-rich Low_complexity Low_complexity 3 51 0 369 308 144 61 chr1 164090871 164091157 -78573196 + L2 LINE L2 371 632 -2682 2299 101 0 3 chr1 164091157 164091455 -78572898 + AluSx SINE Alu 1 297 -15 369 308 144 61 chr1 164091455 164091661 -78572692 + L2 LINE L2 632 904 -2410 326 279 12 12 chr1 164091851 164091937 -78572416 - MER5A DNA MER1_type 0 189 104 306 259 178 7 chr1 164092043 164092178 -78572175 + MER103 DNA DNA 2 159 -7 913 137 0 43 chr1 164092363 164092502 -78571851 - FLAM_C SINE Alu 0 133 1 2144 104 14 10 chr1 164092555 164092852 -78571501 + AluSp SINE Alu 1 298 -15 2067 125 3 7 chr1 164093417 164093748 -78570605 + AluSq SINE Alu 1 330 0 2395 94 0 0 chr1 164093933 164094232 -78570121 + AluSq SINE Alu 7 305 -8 1744 180 7 3 chr1 164094274 164094579 -78569774 - AluJb SINE Alu -6 306 1 2143 100 7 0 chr1 164094605 164094906 -78569447 + AluSg SINE Alu 2 304 0 410 294 81 51 chr1 164095028 164095225 -78569128 - MIR3 SINE MIR -5 203 1 302 252 81 0 chr1 164095732 164095843 -78568510 + L1ME4a LINE L1 5924 6043 -78 * 997 162 31 16 chr1 164095826 164096017 -78568336 + L1MC1 LINE L1 5699 5892 -441 2308 64 0 11 chr1 164096017 164096298 -78568055 + AluY SINE Alu 2 279 -32 198 0 0 0 chr1 164096300 164096322 -78568031 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 266 269 10 75 chr1 164096330 164096458 -78567895 + MIR3 SINE MIR 61 181 -27 208 286 0 26 chr1 164096814 164096891 -78567462 + GA-rich Low_complexity Low_complexity 3 77 0 685 213 26 13 chr1 164097041 164097196 -78567157 + MER103 DNA DNA 5 161 -5 184 227 45 0 chr1 164098192 164098236 -78566117 - L3 LINE CR1 -3 1574 1529 515 215 0 11 chr1 164099213 164099294 -78565059 + AluSx SINE Alu 2 82 -231 2320 87 0 3 chr1 164099294 164099592 -78564761 + AluSg1 SINE Alu 1 297 -12 1636 119 5 0 chr1 164099591 164099810 -78564543 + AluSg/x SINE Alu 76 295 -17 * 515 215 0 11 chr1 164099592 164099821 -78564532 + AluSx SINE Alu 82 93 -220 183 220 0 0 chr1 164099933 164099983 -78564370 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2187 108 0 3 chr1 164101113 164101400 -78562953 + AluSx SINE Alu 1 286 -26 198 0 0 0 chr1 164101407 164101429 -78562924 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 469 313 144 34 chr1 164101441 164101824 -78562529 + L2 LINE L2 2215 2639 -675 574 277 94 46 chr1 164104142 164104247 -78560106 - L2 LINE L2 -9 3304 3206 2312 102 0 0 chr1 164104247 164104541 -78559812 + AluSx SINE Alu 1 294 -18 574 277 94 46 chr1 164104541 164104807 -78559546 - L2 LINE L2 -107 3206 2915 1554 143 50 29 chr1 164105009 164105288 -78559065 + AluJo SINE Alu 1 285 -27 31 0 0 0 chr1 164105290 164105321 -78559032 + AT_rich Low_complexity Low_complexity 1 31 0 2057 113 0 14 chr1 164105328 164105610 -78558743 + AluSx SINE Alu 2 279 -33 2091 121 3 13 chr1 164105643 164105956 -78558397 - AluSx SINE Alu -1 311 2 707 178 0 8 chr1 164106059 164106177 -78558176 - FLAM_A SINE Alu -15 118 2 22 56 0 0 chr1 164106243 164106279 -78558074 + AT_rich Low_complexity Low_complexity 1 36 0 1823 169 3 7 chr1 164106284 164106585 -78557768 + AluJb SINE Alu 1 300 -12 316 300 12 0 chr1 164106588 164106668 -78557685 - Charlie1 DNA MER1_type -2680 81 1 415 169 0 0 chr1 164106722 164106787 -78557566 - L1MC4 LINE L1 -383 7659 7595 493 128 128 0 chr1 164106789 164106867 -78557486 + 5S rRNA rRNA 1 88 -33 1764 173 65 34 chr1 164106867 164107254 -78557099 - L1MC4 LINE L1 -438 7604 7206 1508 185 7 46 chr1 164107287 164107443 -78556910 - AluJb SINE Alu -21 291 151 2209 127 0 0 chr1 164107443 164107742 -78556611 - AluSq SINE Alu -14 299 1 1508 185 7 46 chr1 164107742 164107888 -78556465 - AluJb SINE Alu -161 151 1 1267 254 88 40 chr1 164107981 164108411 -78555942 + L1MC4a LINE L1 5476 5926 -1882 537 300 82 0 chr1 164108882 164109052 -78555301 - MIR SINE MIR -28 234 51 187 235 82 71 chr1 164109132 164109230 -78555123 - L3 LINE CR1 -405 1172 1074 183 49 73 0 chr1 164109287 164109328 -78555025 + (TA)n Simple_repeat Simple_repeat 1 44 0 960 172 58 0 chr1 164109328 164109502 -78554851 - AluJo SINE Alu -128 184 1 240 300 0 0 chr1 164109765 164109825 -78554528 + L3 LINE CR1 616 675 -902 23 42 0 21 chr1 164110163 164110191 -78554162 + AT_rich Low_complexity Low_complexity 1 29 -18 1343 209 60 0 chr1 164110191 164110357 -78553996 + AluJo SINE Alu 1 192 -120 2411 65 7 3 chr1 164110357 164110667 -78553686 - AluY SINE Alu 0 311 1 1343 209 60 0 chr1 164110667 164110782 -78553571 + AluJo SINE Alu 192 299 -13 23 42 0 21 chr1 164110782 164110801 -78553552 + AT_rich Low_complexity Low_complexity 29 47 0 1411 122 23 5 chr1 164111822 164112043 -78552310 + AluJb SINE Alu 1 225 -87 1896 211 82 75 chr1 164112043 164112302 -78552051 + Ricksha_b DNA DNA 289 545 -2309 2201 102 0 32 chr1 164112302 164112616 -78551737 + AluSc SINE Alu 5 308 -1 1896 211 82 75 chr1 164112616 164112837 -78551516 + Ricksha_b DNA DNA 545 763 -2091 1661 169 4 0 chr1 164112837 164113097 -78551256 - AluJo SINE Alu -27 285 25 1896 211 82 75 chr1 164113097 164113394 -78550959 + Ricksha_b DNA DNA 763 1073 -181 1000 127 0 48 chr1 164113397 164113562 -78550791 - FRAM SINE Alu -9 167 11 592 156 120 78 chr1 164113601 164113632 -78550721 + Ricksha_b DNA DNA 1474 1502 -1752 2263 94 7 0 chr1 164113632 164113931 -78550422 - AluSx SINE Alu -11 301 1 592 156 120 78 chr1 164113931 164113959 -78550394 + Ricksha_b DNA DNA 1502 1527 -1727 2026 88 53 3 chr1 164113959 164114242 -78550111 + AluSc SINE Alu 1 297 -12 592 156 120 78 chr1 164114242 164114348 -78550005 + Ricksha_b DNA DNA 1527 1647 -7 306 360 84 12 chr1 164114358 164114743 -78549610 + L2 LINE L2 2703 3115 -157 2024 94 16 52 chr1 164115363 164115672 -78548681 - AluSq SINE Alu -15 298 1 831 182 14 47 chr1 164115934 164116082 -78548271 - FRAM SINE Alu -33 143 1 2229 127 0 9 chr1 164116229 164116544 -78547809 + AluSx SINE Alu 1 312 0 188 67 33 0 chr1 164117954 164117984 -78546369 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 198 0 0 0 chr1 164118522 164118544 -78545809 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1391 97 0 0 chr1 164122076 164122262 -78542091 + AluSg/x SINE Alu 126 311 -1 303 28 0 0 chr1 164122446 164122482 -78541871 + (TA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr1 164122482 164122505 -78541848 + AT_rich Low_complexity Low_complexity 1 23 0 266 115 19 0 chr1 164122634 164122686 -78541667 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr1 164122686 164122707 -78541646 + AT_rich Low_complexity Low_complexity 1 21 0 723 208 77 6 chr1 164124785 164124953 -78539400 + MER58A DNA MER1_type 45 224 0 1912 126 31 0 chr1 164124989 164125275 -78539078 + AluSx SINE Alu 15 309 -3 2305 110 0 0 chr1 164125275 164125574 -78538779 + AluSg SINE Alu 1 300 -10 2430 72 3 0 chr1 164125909 164126201 -78538152 + AluSp SINE Alu 1 293 -20 350 200 23 100 chr1 164126201 164126326 -78538027 + L1ME4a LINE L1 5974 6088 -33 2270 95 3 0 chr1 164126544 164126838 -78537515 - AluSc SINE Alu -14 295 1 2073 119 16 3 chr1 164127373 164127676 -78536677 + AluSx SINE Alu 1 307 -5 2189 124 0 10 chr1 164127676 164127990 -78536363 + AluSx SINE Alu 1 311 -1 1194 121 22 0 chr1 164127996 164128178 -78536175 + AluSg/x SINE Alu 127 312 0 2432 48 21 0 chr1 164128270 164128560 -78535793 + AluY SINE Alu 1 296 -15 1510 165 40 84 chr1 164129596 164129917 -78534436 + AluJo SINE Alu 1 307 -5 1308 34 0 7 chr1 164130137 164130311 -78534042 + L1PA5 LINE L1 5992 6164 0 2073 137 0 7 chr1 164130845 164131145 -78533208 - AluJb SINE Alu -14 298 1 2072 109 0 4 chr1 164131434 164131710 -78532643 - AluSg SINE Alu -19 291 17 1188 160 11 5 chr1 164131710 164131898 -78532455 + AluSg/x SINE Alu 106 294 -18 246 32 0 0 chr1 164131901 164131932 -78532421 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1547 179 7 7 chr1 164133482 164133762 -78530591 - AluJo SINE Alu -32 280 1 1225 168 218 3 chr1 164133777 164134128 -78530225 + LTR54B LTR ERV1 8 479 -31 220 180 30 20 chr1 164134131 164134231 -78530122 + (TA)n Simple_repeat Simple_repeat 1 101 0 1644 153 67 0 chr1 164134323 164134605 -78529748 - AluJo SINE Alu -11 301 1 2182 133 0 0 chr1 164135087 164135388 -78528965 - AluSx SINE Alu -11 301 1 250 272 121 59 chr1 164135388 164135604 -78528749 + L1ME2 LINE L1 5625 5867 -297 2151 113 3 7 chr1 164135604 164135896 -78528457 + AluSx SINE Alu 1 291 -21 250 272 121 59 chr1 164135896 164135984 -78528369 + L1ME2 LINE L1 5867 5948 -216 1293 180 53 56 chr1 164136017 164136301 -78528052 + AluJo SINE Alu 1 283 -29 21 36 0 0 chr1 164136427 164136455 -78527898 + AT_rich Low_complexity Low_complexity 1 28 0 1395 201 50 14 chr1 164136472 164136750 -78527603 + AluJo SINE Alu 3 290 -22 2246 78 4 4 chr1 164136762 164137043 -78527310 + AluSp SINE Alu 1 281 -32 826 66 0 9 chr1 164137266 164137372 -78526981 - AluY SINE Alu -18 293 189 228 143 0 0 chr1 164137870 164137912 -78526441 + (A)n Simple_repeat Simple_repeat 1 42 0 192 40 0 0 chr1 164138082 164138107 -78526246 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr1 164138122 164138142 -78526211 + (A)n Simple_repeat Simple_repeat 1 20 0 2079 115 7 0 chr1 164139002 164139290 -78525063 - AluSx SINE Alu -22 290 1 2114 117 0 0 chr1 164139476 164139781 -78524572 + AluSx SINE Alu 1 305 0 3132 142 50 4 chr1 164139785 164140327 -78524026 + L1MA5 LINE L1 5620 6186 -114 468 125 0 91 chr1 164140447 164140535 -78523818 + FLAM_A SINE Alu 50 129 -13 2377 98 0 0 chr1 164140664 164140970 -78523383 + AluY SINE Alu 1 306 -5 270 0 0 0 chr1 164140983 164141013 -78523340 + (CAA)n Simple_repeat Simple_repeat 3 32 0 2192 100 7 13 chr1 164141039 164141338 -78523015 - AluY SINE Alu -14 297 1 2397 109 0 0 chr1 164141568 164141880 -78522473 + AluSx SINE Alu 1 312 0 925 107 24 71 chr1 164142022 164142131 -78522222 + L1MA5 LINE L1 6135 6235 -65 2196 75 4 7 chr1 164142131 164142410 -78521943 + AluSp SINE Alu 35 312 -1 925 107 24 71 chr1 164142410 164142469 -78521884 + L1MA5 LINE L1 6235 6295 -5 1325 101 0 16 chr1 164142622 164142810 -78521543 - AluSg/x SINE Alu -4 306 122 352 291 58 63 chr1 164142990 164143179 -78521174 - MIR SINE MIR -74 188 1 1636 158 17 47 chr1 164143284 164143582 -78520771 - AluJo SINE Alu -23 289 1 2302 99 0 10 chr1 164143980 164144284 -78520069 + AluSx SINE Alu 1 301 -11 386 216 164 8 chr1 164144284 164144418 -78519935 + L1M4 LINE L1 3200 3354 -2792 460 191 106 32 chr1 164144466 164144654 -78519699 + LTR37B LTR ERV1 222 423 -45 1166 251 124 17 chr1 164144666 164145208 -78519145 + L1M4 LINE L1 3964 4563 -1583 2241 85 3 10 chr1 164145208 164145501 -78518852 + AluSc SINE Alu 1 291 -18 2274 117 0 7 chr1 164145543 164145850 -78518503 + AluSx SINE Alu 1 305 -7 1197 158 0 0 chr1 164145851 164146034 -78518319 + AluSg/x SINE Alu 125 307 -5 1051 188 218 0 chr1 164146035 164146301 -78518052 - MER33 DNA MER1_type 0 324 1 568 275 113 25 chr1 164146301 164146779 -78517574 + L1M4 LINE L1 4573 5146 -1000 2193 101 3 51 chr1 164150070 164150386 -78513967 - AluSx SINE Alu -11 301 1 2162 105 7 0 chr1 164151032 164151317 -78513036 + AluSc SINE Alu 1 287 -22 1988 141 7 3 chr1 164151578 164151868 -78512485 + AluJb SINE Alu 1 291 -21 2449 87 3 0 chr1 164152153 164152464 -78511889 + AluSx SINE Alu 1 312 0 1925 139 10 3 chr1 164152760 164153048 -78511305 + AluJb SINE Alu 2 291 -21 309 271 44 0 chr1 164153238 164153433 -78510920 - L1MC/D LINE L1 -745 5435 5254 468 285 135 89 chr1 164153494 164154133 -78510220 - L1MC/D LINE L1 -982 5164 4497 2136 80 42 7 chr1 164154576 164154865 -78509488 - AluSc SINE Alu -10 299 1 35 0 0 0 chr1 164155000 164155035 -78509318 + AT_rich Low_complexity Low_complexity 1 35 0 811 149 0 0 chr1 164155035 164155156 -78509197 - 5S rRNA rRNA 0 121 1 23 54 0 0 chr1 164155182 164155219 -78509134 + AT_rich Low_complexity Low_complexity 1 37 0 818 114 0 0 chr1 164155309 164155423 -78508930 + FLAM_C SINE Alu 5 118 -15 227 53 0 26 chr1 164155430 164155468 -78508885 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 35 41 0 0 chr1 164155603 164155652 -78508701 + AT_rich Low_complexity Low_complexity 1 49 0 1917 118 77 9 chr1 164155764 164156102 -78508251 - MER46B DNA MER2_type 0 236 1 2293 109 0 3 chr1 164156680 164156982 -78507371 - AluSx SINE Alu -11 301 1 516 272 22 60 chr1 164158650 164158882 -78505471 - Charlie8 DNA MER1_type -2145 272 50 2261 98 0 0 chr1 164158975 164159271 -78505082 + AluSc SINE Alu 1 296 -13 325 269 148 45 chr1 164159546 164159769 -78504584 - L2 LINE L2 -8 3305 3060 419 153 0 0 chr1 164159769 164159828 -78504525 - AluS SINE Alu -247 66 8 1417 101 10 10 chr1 164159828 164160026 -78504327 + AluSg/x SINE Alu 112 309 -1 302 250 31 0 chr1 164160026 164160090 -78504263 - L2 LINE L2 -245 3068 3003 1402 196 185 179 chr1 164160273 164160819 -78503534 - L2 LINE L2 -339 2975 2434 2349 82 7 0 chr1 164160819 164161113 -78503240 - AluSc SINE Alu -13 296 1 1402 196 185 179 chr1 164161113 164161163 -78503190 - L2 LINE L2 -880 2434 2386 385 235 90 18 chr1 164161163 164161329 -78503024 - MER104 DNA Tc2 -2 178 1 2843 10 0 0 chr1 164161336 164161647 -78502706 + AluYa5 SINE Alu 1 311 0 1402 196 185 179 chr1 164161647 164161874 -78502479 - L2 LINE L2 -933 2381 2157 1671 115 48 96 chr1 164161874 164162187 -78502166 + AluSx SINE Alu 1 298 -14 1402 196 185 179 chr1 164162187 164162351 -78502002 - L2 LINE L2 -1157 2157 1806 190 185 15 138 chr1 164162353 164162418 -78501935 - L2 LINE L2 -1843 1471 1415 2458 66 0 7 chr1 164162639 164162943 -78501410 - AluY SINE Alu -9 302 1 242 350 152 28 chr1 164163076 164163682 -78500671 - L2 LINE L2 -779 2535 1855 22 0 0 0 chr1 164164424 164164446 -78499907 + AT_rich Low_complexity Low_complexity 1 22 0 898 194 38 0 chr1 164164715 164164901 -78499452 - MER3 DNA MER1_type -6 203 11 2026 104 0 35 chr1 164165085 164165398 -78498955 + AluSg SINE Alu 1 303 0 1366 167 64 11 chr1 164165629 164165893 -78498460 - AluJo SINE Alu -30 282 5 180 0 0 0 chr1 164165975 164165995 -78498358 + (A)n Simple_repeat Simple_repeat 1 20 0 372 275 238 5 chr1 164166029 164166218 -78498135 + MIR SINE MIR 30 262 0 207 85 106 0 chr1 164166309 164166356 -78497997 + A-rich Low_complexity Low_complexity 2 53 0 935 141 96 6 chr1 164166969 164167146 -78497207 - MER46A DNA MER2_type 0 236 44 739 121 9 9 chr1 164167513 164167629 -78496724 + AluSg/x SINE Alu 175 290 -20 2283 89 13 0 chr1 164167817 164168121 -78496232 + AluSx SINE Alu 1 308 -4 2791 184 68 30 chr1 164170514 164171237 -78493116 - L1MB8 LINE L1 0 6178 5429 1090 160 146 11 chr1 164171244 164171512 -78492841 - L1MA7 LINE L1 0 6291 5988 746 119 0 0 chr1 164171523 164171641 -78492712 - L1MB8 LINE L1 -748 5436 5319 529 153 10 0 chr1 164171647 164171745 -78492608 - L1MC3 LINE L1 -10 7775 7677 1162 97 0 0 chr1 164171754 164171908 -78492445 - AluSg/x SINE Alu -25 287 134 933 133 28 22 chr1 164171908 164172089 -78492264 - L1MC3 LINE L1 -91 7694 7513 310 140 0 0 chr1 164172089 164172139 -78492214 - Alu SINE Alu -20 280 231 702 134 8 17 chr1 164172140 164172259 -78492094 - AluJo SINE Alu -154 158 41 2133 112 0 20 chr1 164172283 164172577 -78491776 - AluSx SINE Alu -18 294 7 8263 168 120 33 chr1 164172587 164174738 -78489615 - L1MC3 LINE L1 -272 7513 5179 1278 196 6 100 chr1 164174738 164175079 -78489274 - AluJb SINE Alu -2 310 2 689 134 125 0 chr1 164175089 164175201 -78489152 - AluJb SINE Alu -179 133 8 722 156 39 28 chr1 164175231 164175410 -78488943 - L1MC3 LINE L1 -982 5164 4984 2890 9 0 0 chr1 164175430 164175745 -78488608 - AluYb8 SINE Alu -3 315 1 322 204 122 68 chr1 164175765 164175805 -78488548 - L1MC3 LINE L1 -1667 4479 4443 1913 126 20 10 chr1 164175805 164176098 -78488255 - AluSx SINE Alu -16 296 1 322 204 122 68 chr1 164176098 164176204 -78488149 - L1MC3 LINE L1 -1703 4443 4325 2017 89 21 92 chr1 164176294 164176621 -78487732 - AluYb8 SINE Alu -14 304 1 1982 151 31 0 chr1 164176667 164176958 -78487395 + AluSx SINE Alu 1 300 -12 1680 237 39 19 chr1 164177013 164177528 -78486825 - L1MC3 LINE L1 -1818 4328 3804 379 161 74 0 chr1 164177607 164177688 -78486665 - L1MB4 LINE L1 0 6180 6094 2143 111 10 10 chr1 164177869 164178167 -78486186 - AluSx SINE Alu -14 298 1 299 25 25 0 chr1 164178380 164178420 -78485933 + (CA)n Simple_repeat Simple_repeat 2 42 0 204 40 0 0 chr1 164178419 164178444 -78485909 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 214 344 176 0 chr1 164178994 164179119 -78485234 - MIR3 SINE MIR -22 186 40 2130 93 61 0 chr1 164179132 164179412 -78484941 - AluSp SINE Alu -16 297 1 28 29 0 0 chr1 164179419 164179454 -78484899 + AT_rich Low_complexity Low_complexity 1 35 0 2389 98 0 0 chr1 164179457 164179764 -78484589 + AluSq SINE Alu 1 307 -6 2024 132 3 3 chr1 164179829 164180132 -78484221 + AluSx SINE Alu 1 303 -9 2003 139 29 23 chr1 164180236 164180545 -78483808 + AluJo SINE Alu 1 311 -1 2174 125 3 3 chr1 164180971 164181282 -78483071 + AluSx SINE Alu 1 311 -1 1927 110 0 0 chr1 164181691 164181945 -78482408 + AluSq SINE Alu 1 254 -59 1758 159 24 3 chr1 164182668 164182964 -78481389 + AluJo SINE Alu 2 303 -9 1719 176 3 10 chr1 164184529 164184825 -78479528 + AluJo SINE Alu 1 294 -18 2102 123 30 0 chr1 164184830 164185130 -78479223 + AluSp SINE Alu 5 313 0 186 302 0 0 chr1 164185376 164185419 -78478934 - L2 LINE L2 -20 3252 3210 553 271 151 9 chr1 164185465 164185683 -78478670 - MIR SINE MIR -3 259 11 654 177 28 14 chr1 164185733 164185874 -78478479 + L1MB8 LINE L1 6034 6176 -2 251 246 182 18 chr1 164186131 164186241 -78478112 - MIR SINE MIR -88 174 47 1775 143 63 7 chr1 164187163 164187450 -78476903 - AluSx SINE Alu -9 303 1 653 321 185 31 chr1 164188315 164188826 -78475527 + L2 LINE L2 1852 2283 -1031 2160 101 4 0 chr1 164188826 164189102 -78475251 + AluSq SINE Alu 2 278 -35 315 0 0 0 chr1 164189105 164189140 -78475213 + (CA)n Simple_repeat Simple_repeat 1 35 0 653 321 185 31 chr1 164189140 164189310 -78475043 + L2 LINE L2 2284 2643 -671 2366 74 0 3 chr1 164189382 164189679 -78474674 - AluY SINE Alu -14 297 2 222 177 16 16 chr1 164189752 164189814 -78474539 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 1759 181 6 32 chr1 164189818 164190133 -78474220 - AluJb SINE Alu -5 307 1 1693 112 0 48 chr1 164190243 164190494 -78473859 + AluSq SINE Alu 1 239 -74 420 233 26 9 chr1 164190766 164190882 -78473471 + MLT1H LTR MaLR 97 214 -335 581 247 115 11 chr1 164190963 164191137 -78473216 + MLT1H LTR MaLR 366 557 -10 2167 102 3 3 chr1 164191643 164191958 -78472395 + AluSq SINE Alu 1 315 0 387 279 146 12 chr1 164192105 164192270 -78472083 - MIR SINE MIR -65 197 11 807 188 95 102 chr1 164192608 164192827 -78471526 - L1ME3A LINE L1 -15 6155 5936 2512 44 0 3 chr1 164192827 164193123 -78471230 + AluY SINE Alu 1 295 -16 807 188 95 102 chr1 164193123 164193181 -78471172 - L1ME3A LINE L1 -234 5936 5878 1637 193 20 0 chr1 164193181 164193477 -78470876 - AluJo SINE Alu -10 302 1 807 188 95 102 chr1 164193477 164193502 -78470851 - L1ME3A LINE L1 -292 5878 5854 205 161 0 36 chr1 164194149 164194205 -78470148 + GA-rich Low_complexity Low_complexity 2 55 0 2266 115 0 0 chr1 164194414 164194718 -78469635 + AluSx SINE Alu 1 304 -8 2060 124 7 3 chr1 164195276 164195566 -78468787 + AluSx SINE Alu 1 291 -21 350 283 119 0 chr1 164195591 164195750 -78468603 - MIR SINE MIR -13 249 72 275 70 0 0 chr1 164195876 164195919 -78468434 + L1MA3 LINE L1 6263 6305 0 422 231 102 0 chr1 164195999 164196107 -78468246 - L2 LINE L2 -2 3311 3193 1698 156 71 7 chr1 164196131 164196414 -78467939 - AluJb SINE Alu -11 301 1 1743 135 6 64 chr1 164197650 164197961 -78466392 + AluJb SINE Alu 1 293 -19 246 250 22 98 chr1 164198196 164198221 -78466132 + MIR SINE MIR 8 33 -175 2449 74 0 6 chr1 164198221 164198532 -78465821 + AluY SINE Alu 1 309 -2 246 250 22 98 chr1 164198532 164198598 -78465755 + MIR SINE MIR 33 92 -116 22 35 0 0 chr1 164198737 164198766 -78465587 + AT_rich Low_complexity Low_complexity 1 29 0 598 177 9 0 chr1 164199018 164199131 -78465222 + MER3 DNA MER1_type 33 146 -63 26 0 0 0 chr1 164199148 164199174 -78465179 + AT_rich Low_complexity Low_complexity 1 26 0 2099 101 25 0 chr1 164199174 164199452 -78464901 - AluSc SINE Alu -24 285 1 327 131 16 0 chr1 164199452 164199513 -78464840 + L1MC2 LINE L1 5791 5852 -481 615 143 0 11 chr1 164199516 164199607 -78464746 + AluJ/FLAM SINE Alu 2 91 -221 2476 173 53 2 chr1 164199643 164200099 -78464254 + L1MC2 LINE L1 5850 6328 -16 297 189 38 0 chr1 164200106 164200159 -78464194 + MER3 DNA MER1_type 155 209 0 236 157 39 78 chr1 164200119 164200170 -78464183 - MER3 DNA MER1_type -120 89 41 * 2151 95 3 17 chr1 164201088 164201384 -78462969 - AluSg1 SINE Alu -17 292 1 820 167 0 8 chr1 164201404 164201530 -78462823 - AluSq/x SINE Alu -183 129 5 2156 131 0 0 chr1 164201638 164201929 -78462424 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr1 164201930 164201958 -78462395 + AT_rich Low_complexity Low_complexity 1 28 0 845 174 0 0 chr1 164202145 164202277 -78462076 - FLAM_C SINE Alu 0 133 2 25 31 0 0 chr1 164202295 164202327 -78462026 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr1 164202342 164202370 -78461983 + AT_rich Low_complexity Low_complexity 1 28 0 1189 139 79 9 chr1 164203234 164203450 -78460903 + L1MB5 LINE L1 5944 6174 0 243 0 0 0 chr1 164203503 164203530 -78460823 + (A)n Simple_repeat Simple_repeat 1 27 0 843 223 134 34 chr1 164203660 164203898 -78460455 + AluSg SINE Alu 17 278 -32 26 0 0 0 chr1 164204760 164204786 -78459567 + AT_rich Low_complexity Low_complexity 1 26 0 235 343 19 19 chr1 164205110 164205218 -78459135 + MIR SINE MIR 39 146 -62 2232 94 0 0 chr1 164206446 164206743 -78457610 + AluSx SINE Alu 1 297 -15 237 119 0 0 chr1 164207855 164207897 -78456456 + (CCG)n Simple_repeat Simple_repeat 1 42 0 200 200 22 0 chr1 164207927 164207972 -78456381 + (CCG)n Simple_repeat Simple_repeat 1 46 0 180 77 0 0 chr1 164208030 164208056 -78456297 + (TCC)n Simple_repeat Simple_repeat 1 26 0 200 293 20 80 chr1 164208864 164209014 -78455339 + L2 LINE L2 10 150 -3164 2260 89 38 0 chr1 164209693 164209984 -78454369 + AluSp SINE Alu 9 310 -3 1983 98 18 4 chr1 164210172 164210446 -78453907 + AluSc SINE Alu 1 278 -31 2279 89 0 7 chr1 164210447 164210740 -78453613 + AluSq SINE Alu 1 291 -22 1425 95 0 0 chr1 164210743 164210922 -78453431 + AluSc SINE Alu 126 304 -5 25 0 0 0 chr1 164211063 164211088 -78453265 + AT_rich Low_complexity Low_complexity 1 25 0 776 152 15 45 chr1 164211149 164211281 -78453072 + FLAM_C SINE Alu 1 128 -5 2292 103 0 0 chr1 164211302 164211594 -78452759 + AluSx SINE Alu 2 293 -19 1620 183 0 33 chr1 164211807 164212113 -78452240 + AluJb SINE Alu 15 310 -2 229 281 94 0 chr1 164212233 164212297 -78452056 + MIR SINE MIR 176 245 -17 2250 98 3 3 chr1 164212538 164212835 -78451518 - AluSc SINE Alu -12 297 1 2289 114 0 0 chr1 164213258 164213556 -78450797 + AluSq SINE Alu 1 298 -15 316 122 20 0 chr1 164214555 164214604 -78449749 - MLT1B LTR MaLR -2 388 339 1019 123 58 7 chr1 164214671 164214825 -78449528 - AluSg/x SINE Alu -14 296 135 348 228 26 72 chr1 164214834 164214896 -78449457 + L1M1 LINE L1 3344 3407 -4158 2159 118 0 0 chr1 164214896 164215184 -78449169 + AluSg SINE Alu 1 288 -22 279 79 0 0 chr1 164215189 164215227 -78449126 + (TA)n Simple_repeat Simple_repeat 2 39 0 348 228 26 72 chr1 164215227 164215351 -78449002 + L1M1 LINE L1 3411 3527 -4038 2743 20 0 3 chr1 164215373 164215674 -78448679 + L1PA3 LINE L1 5856 6155 0 562 162 11 187 chr1 164215680 164215856 -78448497 + L1M1 LINE L1 3484 3689 -3876 2214 100 0 0 chr1 164215856 164216137 -78448216 + AluSq SINE Alu 24 304 -9 1260 189 15 111 chr1 164216141 164216474 -78447879 + AluJo SINE Alu 2 302 0 562 162 11 187 chr1 164216474 164216519 -78447834 + L1M1 LINE L1 3692 3664 -3901 1944 156 86 13 chr1 164216519 164216833 -78447520 + MER1B DNA MER1_type 1 337 0 562 162 11 187 chr1 164216833 164216867 -78447486 + L1M1 LINE L1 3663 3701 -3864 431 305 7 47 chr1 164217547 164217792 -78446561 + MIR SINE MIR 29 260 -2 186 305 140 67 chr1 164217827 164217867 -78446486 - MER5B DNA MER1_type -2 176 140 1863 178 3 3 chr1 164217867 164218176 -78446177 + AluJb SINE Alu 3 311 -1 186 305 140 67 chr1 164218176 164218299 -78446054 - MER5B DNA MER1_type -38 140 1 1066 220 5 45 chr1 164218311 164218534 -78445819 - MER58A DNA MER1_type -4 220 7 1566 165 57 30 chr1 164219801 164220098 -78444255 + AluJb SINE Alu 3 307 -5 270 194 0 45 chr1 164220098 164220165 -78444188 + LTR67 LTR ERVL 461 524 -33 607 84 0 0 chr1 164220657 164220740 -78443613 - Alu SINE Alu 0 310 228 886 287 46 92 chr1 164221004 164221059 -78443294 - L2 LINE L2 -11 3261 3205 2160 94 49 0 chr1 164221059 164221345 -78443008 - AluSx SINE Alu -12 300 1 886 287 46 92 chr1 164221345 164221790 -78442563 - L2 LINE L2 -67 3205 2772 311 174 139 35 chr1 164221846 164221961 -78442392 - MER53 DNA DNA -3 186 60 936 167 12 19 chr1 164221983 164222145 -78442208 - AluJo SINE Alu -30 282 122 545 198 0 0 chr1 164222196 164222282 -78442071 + AluJ/FLAM SINE Alu 2 87 -225 491 326 63 0 chr1 164222310 164222485 -78441868 - MIR SINE MIR -47 215 30 307 269 97 2 chr1 164222840 164223029 -78441324 + LTR33A LTR ERVL 277 514 -9 29 0 0 0 chr1 164223133 164223162 -78441191 + AT_rich Low_complexity Low_complexity 1 29 0 1798 163 0 7 chr1 164223237 164223520 -78440833 + AluJb SINE Alu 1 281 -31 228 111 0 0 chr1 164223522 164223558 -78440795 + (TA)n Simple_repeat Simple_repeat 2 37 0 2192 112 16 0 chr1 164224249 164224553 -78439800 - AluSg SINE Alu -1 309 1 939 119 0 0 chr1 164224564 164224690 -78439663 - AluSq/x SINE Alu -187 126 1 735 267 58 17 chr1 164224693 164224933 -78439420 - MIR SINE MIR -6 256 7 1945 149 3 13 chr1 164225078 164225379 -78438974 + AluJo SINE Alu 1 298 -14 915 138 0 23 chr1 164225640 164225770 -78438583 + FLAM_C SINE Alu 1 127 -6 740 299 86 0 chr1 164226169 164226403 -78437950 - MIR SINE MIR -4 258 5 1198 156 11 0 chr1 164226820 164227006 -78437347 + Tigger4(Zombi) DNA MER2_type 1 188 -2543 1918 132 0 30 chr1 164227021 164227260 -78437093 + Tigger4(Zombi) DNA MER2_type 2359 2589 -142 1232 235 19 26 chr1 164227260 164227571 -78436782 + AluJo SINE Alu 1 309 -3 1918 132 0 30 chr1 164227571 164227635 -78436718 + Tigger4(Zombi) DNA MER2_type 2589 2653 -78 2087 127 3 3 chr1 164227635 164227926 -78436427 - AluSg1 SINE Alu -15 294 4 1124 68 0 0 chr1 164227934 164228067 -78436286 - AluSq/x SINE Alu -179 133 1 2156 116 7 10 chr1 164228126 164228429 -78435924 - AluSx SINE Alu -10 302 1 1582 157 30 43 chr1 164228521 164228688 -78435665 - AluJo SINE Alu -11 301 133 225 83 0 0 chr1 164228688 164228724 -78435629 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2056 122 4 0 chr1 164228724 164229003 -78435350 - AluSp SINE Alu -31 282 3 1582 157 30 43 chr1 164229003 164229139 -78435214 - AluJo SINE Alu -177 135 1 1013 139 0 78 chr1 164229365 164229545 -78434808 - AluJo SINE Alu -15 297 132 2247 81 0 3 chr1 164229562 164229847 -78434506 + AluY SINE Alu 1 284 -27 186 133 0 0 chr1 164229848 164229878 -78434475 + (TA)n Simple_repeat Simple_repeat 2 31 0 226 178 0 0 chr1 164229895 164229940 -78434413 - LTR66 LTR ERVL -171 439 395 * 241 174 0 0 chr1 164229901 164229947 -78434406 + LTR66 LTR ERVL 394 439 -171 794 153 51 0 chr1 164229970 164230088 -78434265 - AluJo SINE Alu -181 131 8 264 176 11 99 chr1 164231095 164231150 -78433203 - L1MC5 LINE L1 -45 7916 7870 2215 118 3 6 chr1 164231150 164231463 -78432890 + AluSx SINE Alu 1 312 0 264 176 11 99 chr1 164231463 164231498 -78432855 - L1MC5 LINE L1 -91 7870 7834 1972 162 3 0 chr1 164231613 164231921 -78432432 - AluSx SINE Alu -3 309 1 335 268 31 8 chr1 164232006 164232133 -78432220 - HAL1 LINE L1 -136 2371 2242 456 277 17 0 chr1 164232133 164232252 -78432101 - L2 LINE L2 -12 3301 3181 335 275 78 21 chr1 164232263 164232405 -78431948 - HAL1 LINE L1 -295 2212 2063 1529 144 130 62 chr1 164232411 164232750 -78431603 - MLT1A1 LTR MaLR -3 362 1 868 194 61 0 chr1 164232838 164233003 -78431350 - FAM SINE Alu 0 175 1 1258 264 148 17 chr1 164233110 164233696 -78430657 - HAL1 LINE L1 -741 1766 1104 2122 106 42 22 chr1 164233712 164234023 -78430330 + MER1B DNA MER1_type 1 317 -22 458 249 54 27 chr1 164234039 164234224 -78430129 - HAL1 LINE L1 -1423 1084 895 296 261 14 0 chr1 164234320 164234389 -78429964 - HAL1 LINE L1 -2434 73 4 238 313 16 0 chr1 164234520 164234584 -78429769 + tRNA-Ile-ATT tRNA tRNA 2 66 -11 1955 132 14 0 chr1 164235011 164235291 -78429062 - AluSx SINE Alu -26 286 3 998 246 79 58 chr1 164235303 164235632 -78428721 - LTR16A LTR ERVL -56 394 59 3320 108 21 85 chr1 164235657 164236220 -78428133 + MER1A DNA MER1_type 1 527 -2 1323 140 100 59 chr1 164236747 164237018 -78427335 + AluJb SINE Alu 22 303 -9 189 175 0 0 chr1 164237086 164237126 -78427227 + CT-rich Low_complexity Low_complexity 1 40 0 2078 113 3 39 chr1 164237207 164237517 -78426836 - AluSx SINE Alu -12 300 2 244 329 186 0 chr1 164238350 164238490 -78425863 - L3 LINE CR1 -1202 375 210 1977 139 14 3 chr1 164238863 164239157 -78425196 + AluJb SINE Alu 1 297 -15 271 309 123 85 chr1 164239169 164239405 -78424948 + MIR SINE MIR 6 250 -12 4839 143 28 33 chr1 164239521 164240234 -78424119 - L1MA4 LINE L1 -106 6194 5485 2110 125 7 0 chr1 164240234 164240529 -78423824 - AluSx SINE Alu -13 299 3 4839 143 28 33 chr1 164240529 164240683 -78423670 - L1MA4 LINE L1 -815 5485 5332 1923 164 7 3 chr1 164240683 164240976 -78423377 - AluSx SINE Alu -15 297 4 1948 106 8 0 chr1 164240987 164241252 -78423101 - AluSp SINE Alu -16 297 31 3923 107 101 128 chr1 164241255 164242651 -78421702 - pTR5 LTR ERV1 0 2438 743 4310 149 9 20 chr1 164242689 164242956 -78421397 - L1MA4 LINE L1 -805 5341 5073 2170 125 0 3 chr1 164242956 164243261 -78421092 + AluSx SINE Alu 2 305 -7 4310 149 9 20 chr1 164243261 164243756 -78420597 - L1MA4 LINE L1 -1073 5073 4587 2008 145 0 3 chr1 164243756 164244059 -78420294 - AluJb SINE Alu -10 302 1 13836 141 36 28 chr1 164244059 164244956 -78419397 + Ricksha DNA DNA 272 1160 -2086 2271 103 0 10 chr1 164244956 164245257 -78419096 + AluSx SINE Alu 1 298 -14 13836 141 36 28 chr1 164245257 164246139 -78418214 + Ricksha DNA DNA 1160 2034 -1212 2035 139 3 3 chr1 164246139 164246440 -78417913 - AluSx SINE Alu -11 301 1 13836 141 36 28 chr1 164246440 164246824 -78417529 + Ricksha DNA DNA 2034 2457 -789 210 71 0 0 chr1 164246824 164246852 -78417501 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 13836 141 36 28 chr1 164246852 164246979 -78417374 + Ricksha DNA DNA 2457 2582 -664 898 107 16 0 chr1 164246980 164247101 -78417252 - AluSg/x SINE Alu -18 292 170 1491 165 69 0 chr1 164247102 164247362 -78416991 + Ricksha DNA DNA 2584 2861 -385 331 125 28 28 chr1 164247371 164247443 -78416910 + CT-rich Low_complexity Low_complexity 2 73 0 654 104 0 0 chr1 164247506 164247602 -78416751 + (TTCC)n Simple_repeat Simple_repeat 2 97 0 1853 133 3 68 chr1 164247618 164247941 -78416412 - AluSx SINE Alu -10 302 1 1496 129 15 94 chr1 164247942 164248099 -78416254 + Ricksha DNA DNA 2930 3047 -204 1372 193 44 4 chr1 164248099 164248373 -78415980 - AluJb SINE Alu -27 285 1 1496 129 15 94 chr1 164248373 164248556 -78415797 + Ricksha DNA DNA 3047 3243 -8 355 305 68 86 chr1 164249108 164249459 -78414894 + L2 LINE L2 2230 2574 -740 1429 198 35 14 chr1 164249496 164249784 -78414569 + AluJo SINE Alu 1 294 -18 189 0 0 0 chr1 164249963 164249984 -78414369 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2130 87 4 0 chr1 164249985 164250261 -78414092 - AluSx SINE Alu -33 279 3 1039 170 40 25 chr1 164250286 164250486 -78413867 - HAL1 LINE L1 -762 1745 1543 * 6566 101 31 66 chr1 164250471 164250790 -78413563 + L1MA3 LINE L1 5039 5368 -937 2051 136 3 10 chr1 164250790 164251091 -78413262 + AluSx SINE Alu 1 299 -13 6566 101 31 66 chr1 164251091 164251161 -78413192 + L1MA3 LINE L1 5368 5439 -866 270 0 0 0 chr1 164251161 164251191 -78413162 + (GAA)n Simple_repeat Simple_repeat 2 31 0 6566 101 31 66 chr1 164251191 164252111 -78412242 + L1MA3 LINE L1 5439 6305 0 240 191 79 16 chr1 164252131 164252194 -78412159 - HAL1 LINE L1 -937 1570 1504 1911 227 163 31 chr1 164252195 164252746 -78411607 - MLT1E3 LTR MaLR 0 624 1 1878 249 111 59 chr1 164252746 164253252 -78411101 - HAL1 LINE L1 -1000 1507 934 2123 147 0 0 chr1 164253252 164253558 -78410795 - AluSx SINE Alu -5 307 2 1878 249 111 59 chr1 164253558 164253936 -78410417 - HAL1 LINE L1 -1573 934 577 280 294 96 14 chr1 164254612 164254758 -78409595 - L1ME4a LINE L1 -18 6103 5946 29 47 0 0 chr1 164254758 164254801 -78409552 + AT_rich Low_complexity Low_complexity 1 43 0 855 261 23 66 chr1 164254870 164255127 -78409226 + MIR SINE MIR 17 262 0 490 229 11 90 chr1 164255151 164255228 -78409125 - L1ME4a LINE L1 -315 5806 5724 2012 97 66 3 chr1 164255228 164255516 -78408837 - AluSq SINE Alu -7 306 1 2204 93 3 45 chr1 164255521 164255694 -78408659 - AluSq SINE Alu -15 298 119 194 0 39 0 chr1 164255694 164255720 -78408633 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2359 49 0 7 chr1 164255720 164256004 -78408349 - AluY SINE Alu -29 282 1 2204 93 3 45 chr1 164256004 164256140 -78408213 - AluSq SINE Alu -192 121 1 490 229 11 90 chr1 164256140 164256244 -78408109 - L1ME4a LINE L1 -401 5720 5634 317 333 14 14 chr1 164256265 164256403 -78407950 + L2 LINE L2 3175 3312 -1 239 272 11 22 chr1 164256752 164256844 -78407509 - LTR67 LTR ERVL -17 540 450 1987 130 43 0 chr1 164257515 164257814 -78406539 - AluSx SINE Alu 0 312 1 618 359 63 25 chr1 164258007 164258372 -78405981 + L2 LINE L2 2523 2901 -413 201 74 0 0 chr1 164258373 164258400 -78405953 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 344 293 92 79 chr1 164258400 164258803 -78405550 + L2 LINE L2 2892 3299 -14 2206 107 10 0 chr1 164258840 164259140 -78405213 - AluSx SINE Alu -8 304 2 535 147 11 0 chr1 164259214 164259309 -78405044 - L1PA15 LINE L1 -148 6017 5922 1609 146 90 0 chr1 164259647 164259915 -78404438 + AluJb SINE Alu 5 296 -16 242 338 60 45 chr1 164260192 164260325 -78404028 - MIR SINE MIR -112 150 16 230 313 30 0 chr1 164260851 164260918 -78403435 + L2 LINE L2 3242 3310 -3 630 283 114 9 chr1 164261146 164261365 -78402988 + MIR SINE MIR 20 261 -1 23 0 0 0 chr1 164261639 164261662 -78402691 + AT_rich Low_complexity Low_complexity 1 23 0 375 228 27 81 chr1 164261708 164261857 -78402496 - HAL1 LINE L1 -4 2503 2363 253 0 54 0 chr1 164261885 164261922 -78402431 + (TA)n Simple_repeat Simple_repeat 1 39 0 2267 115 0 0 chr1 164262015 164262319 -78402034 + AluSx SINE Alu 1 304 -8 2168 122 0 13 chr1 164262326 164262637 -78401716 + AluSx SINE Alu 5 311 -1 706 218 53 68 chr1 164262658 164262924 -78401429 - HAL1 LINE L1 -1499 1008 747 298 302 16 39 chr1 164263186 164263315 -78401038 - HAL1 LINE L1 -1943 564 439 361 229 14 0 chr1 164263321 164263391 -78400962 - MER5A DNA MER1_type -2 187 117 1657 145 90 13 chr1 164263392 164263906 -78400447 + MER51A LTR ERV1 1 625 -9 448 229 128 0 chr1 164263925 164264034 -78400319 - MER5A DNA MER1_type -66 123 1 588 264 57 101 chr1 164264092 164264232 -78400121 - HAL1 LINE L1 -2155 352 207 279 0 0 0 chr1 164264232 164264263 -78400090 + (CA)n Simple_repeat Simple_repeat 2 32 0 588 264 57 101 chr1 164264263 164264490 -78399863 - HAL1 LINE L1 -2300 207 1 397 254 114 9 chr1 164264489 164264603 -78399750 - HAL1b LINE L1 -40 1308 1183 * 2266 108 7 0 chr1 164264609 164264916 -78399437 + AluSc SINE Alu 1 309 0 21 104 0 0 chr1 164264954 164265031 -78399322 + AT_rich Low_complexity Low_complexity 1 77 0 3923 120 20 62 chr1 164265054 164266156 -78398197 + L1M1 LINE L1 4709 5769 -531 219 158 0 0 chr1 164266172 164266210 -78398143 + A-rich Low_complexity Low_complexity 1 38 0 4134 117 53 6 chr1 164266212 164266853 -78397500 + L1PBa LINE L1 120 790 -6073 4814 121 77 7 chr1 164266858 164267409 -78396944 + L1PBa LINE L1 2156 2667 -4195 186 43 0 0 chr1 164267409 164267432 -78396921 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4814 121 77 7 chr1 164267432 164268054 -78396299 + L1PBa LINE L1 2667 3410 -3452 1983 185 31 22 chr1 164268035 164268192 -78396161 + L1 LINE L1 4549 4703 -1443 * 2139 100 27 7 chr1 164268192 164268492 -78395861 + AluSq SINE Alu 1 306 -7 1983 185 31 22 chr1 164268492 164268788 -78395565 + L1 LINE L1 4703 5006 -1140 1056 148 6 0 chr1 164268791 164268953 -78395400 + AluJb SINE Alu 2 164 -148 1729 127 12 8 chr1 164268953 164269212 -78395141 - AluSx SINE Alu -52 260 1 5668 214 47 96 chr1 164269212 164269679 -78394674 - L1M4 LINE L1 -1732 4414 3926 1792 179 10 0 chr1 164269679 164269976 -78394377 - AluJb SINE Alu -11 301 2 2072 123 3 0 chr1 164269982 164270296 -78394057 - AluSq SINE Alu 0 315 1 5668 214 47 96 chr1 164270296 164270587 -78393766 - L1M4 LINE L1 -2225 3921 3617 183 42 0 0 chr1 164270587 164270611 -78393742 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5668 214 47 96 chr1 164270611 164270780 -78393573 - L1M4 LINE L1 -2529 3617 3441 4366 94 5 0 chr1 164270780 164271346 -78393007 - L1PA13 LINE L1 0 6163 5595 5668 214 47 96 chr1 164271346 164272750 -78391603 - L1M4 LINE L1 -2705 3441 2191 2496 70 7 0 chr1 164272750 164273051 -78391302 - AluY SINE Alu -8 303 1 5668 214 47 96 chr1 164273051 164273104 -78391249 - L1M4 LINE L1 -3955 2191 2137 726 221 23 23 chr1 164273112 164273284 -78391069 - AluJo SINE Alu -21 291 120 6939 72 9 10 chr1 164273309 164273811 -78390542 - L1PA11 LINE L1 -4 6170 5669 2303 112 3 0 chr1 164273811 164274114 -78390239 + AluSx SINE Alu 1 304 -8 6939 72 9 10 chr1 164274114 164275312 -78389041 - L1PA11 LINE L1 -505 5669 4474 2298 209 10 17 chr1 164275312 164275860 -78388493 - L1PA12 LINE L1 -5085 2499 1179 1106 287 77 75 chr1 164276264 164276770 -78387583 - ERVL LTR ERVL -4038 1726 1216 1977 89 0 62 chr1 164276770 164277062 -78387291 - AluSg SINE Alu -9 301 28 1106 287 77 75 chr1 164277062 164277279 -78387074 - ERVL LTR ERVL -4548 1216 1001 2400 234 127 21 chr1 164277428 164278179 -78386174 - L2 LINE L2 -1077 2237 1408 1237 213 43 46 chr1 164278191 164278732 -78385621 - L1ME2 LINE L1 -3 6167 5660 460 314 80 47 chr1 164278756 164279055 -78385298 + L2 LINE L2 2255 2563 -751 1798 134 45 17 chr1 164279087 164279205 -78385148 + AluJb SINE Alu 1 114 -198 284 0 28 0 chr1 164279205 164279241 -78385112 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1798 134 45 17 chr1 164279241 164279414 -78384939 + AluJb SINE Alu 114 300 -12 209 308 68 55 chr1 164279419 164279565 -78384788 + L2 LINE L2 2698 2845 -469 2392 102 0 0 chr1 164279761 164280065 -78384288 - AluSx SINE Alu -8 304 1 249 250 158 26 chr1 164280113 164280189 -78384164 + L2 LINE L2 3228 3313 0 2214 112 3 0 chr1 164280255 164280550 -78383803 - AluSx SINE Alu -16 296 1 1683 165 0 31 chr1 164280596 164280908 -78383445 - AluJb SINE Alu 0 303 1 21 71 0 0 chr1 164280911 164280953 -78383400 + AT_rich Low_complexity Low_complexity 1 42 0 377 125 18 0 chr1 164280961 164281017 -78383336 - U7 snRNA snRNA -1 62 6 22 0 0 0 chr1 164281021 164281043 -78383310 + AT_rich Low_complexity Low_complexity 1 22 0 703 173 8 55 chr1 164281044 164281171 -78383182 - FLAM_A SINE Alu -12 121 1 2867 118 31 17 chr1 164282574 164282996 -78381357 + MSTA LTR MaLR 1 428 0 310 361 84 5 chr1 164283393 164283595 -78380758 + L2 LINE L2 2097 2314 -1000 687 311 37 28 chr1 164284065 164284419 -78379934 - ERVL LTR ERVL -1924 3840 3484 4409 127 15 9 chr1 164284429 164285096 -78379257 - Tigger1 DNA MER2_type -8 2410 1740 * 10971 119 5 14 chr1 164285093 164286704 -78377649 - Tigger1 DNA MER2_type -821 1597 1 2139 113 10 3 chr1 164286821 164287121 -78377232 - AluSc SINE Alu -7 302 1 1928 162 0 6 chr1 164287129 164287443 -78376910 - AluJb SINE Alu 0 312 1 24 0 0 0 chr1 164287453 164287477 -78376876 + AT_rich Low_complexity Low_complexity 1 24 0 1696 168 6 35 chr1 164287518 164287834 -78376519 - AluSx SINE Alu 0 312 6 1258 174 94 76 chr1 164287844 164288065 -78376288 - AluJo SINE Alu -19 293 64 1856 152 0 26 chr1 164288065 164288374 -78375979 + AluJo SINE Alu 1 301 -11 1258 174 94 76 chr1 164288374 164288440 -78375913 - AluJo SINE Alu -248 64 1 22 0 0 0 chr1 164288440 164288462 -78375891 + AT_rich Low_complexity Low_complexity 1 22 0 1341 186 0 39 chr1 164288512 164288608 -78375745 + Tigger1 DNA MER2_type 199 297 -2121 2393 86 7 0 chr1 164288608 164288911 -78375442 + AluSp SINE Alu 1 305 -8 1341 186 0 39 chr1 164288911 164289072 -78375281 + Tigger1 DNA MER2_type 297 446 -1972 903 333 55 10 chr1 164289183 164289844 -78374509 + ERVL LTR ERVL 2929 3652 -2002 328 293 93 14 chr1 164289893 164290033 -78374320 - L2 LINE L2 -938 2376 2226 1480 317 27 6 chr1 164290033 164290560 -78373793 + ERVL LTR ERVL 3766 4303 -1461 527 200 9 0 chr1 164290570 164290680 -78373673 + L2 LINE L2 1930 2040 -1274 2308 158 6 3 chr1 164290681 164291036 -78373317 - MER50-int LTR ERV1 -6849 356 1 1363 108 22 40 chr1 164291051 164291204 -78373149 - MER50 LTR ERV1 -17 717 567 2121 106 0 3 chr1 164291204 164291537 -78372816 + AluSx SINE Alu 1 332 0 1363 108 22 40 chr1 164291537 164291605 -78372748 - MER50 LTR ERV1 -167 567 499 2271 272 88 39 chr1 164291605 164291709 -78372644 + L2 LINE L2 2030 2127 -1186 2314 113 0 0 chr1 164291709 164292010 -78372343 - AluSx SINE Alu -11 301 1 2271 272 88 39 chr1 164292010 164292337 -78372016 + L2 LINE L2 2127 2436 -877 1925 113 99 0 chr1 164292337 164292620 -78371733 - AluSx SINE Alu -1 311 1 2271 272 88 39 chr1 164292620 164293216 -78371137 + L2 LINE L2 2436 3189 -124 2167 132 0 3 chr1 164293315 164293626 -78370727 - AluSx SINE Alu -2 310 1 1236 223 50 74 chr1 164293636 164293667 -78370686 - L1MC4 LINE L1 0 8042 8012 1948 159 0 7 chr1 164293667 164293968 -78370385 + AluJo SINE Alu 1 299 -13 1236 223 50 74 chr1 164293968 164294078 -78370275 - L1MC4 LINE L1 -30 8012 7901 216 0 0 0 chr1 164294078 164294102 -78370251 + (CA)n Simple_repeat Simple_repeat 2 25 0 1236 223 50 74 chr1 164294102 164294474 -78369879 - L1MC4 LINE L1 -141 7901 7540 23 0 0 0 chr1 164294475 164294498 -78369855 + AT_rich Low_complexity Low_complexity 1 23 0 839 340 77 9 chr1 164294518 164294962 -78369391 + ERVL LTR ERVL 4851 5324 -440 489 234 44 38 chr1 164294963 164295103 -78369250 + HAL1 LINE L1 602 745 -1762 2423 109 48 31 chr1 164295103 164295461 -78368892 + THE1B LTR MaLR 1 364 0 489 234 44 38 chr1 164295461 164295478 -78368875 + HAL1 LINE L1 745 760 -1747 * 790 264 157 29 chr1 164295464 164295493 -78368860 + HAL1 LINE L1 1506 1530 -977 2110 176 28 6 chr1 164295493 164295850 -78368503 + MLT1A1 LTR MaLR 1 365 0 790 264 157 29 chr1 164295850 164296653 -78367700 + HAL1 LINE L1 1530 2477 -30 1102 181 100 129 chr1 164297076 164297400 -78366953 + MLT1A1 LTR MaLR 6 320 -45 2203 105 0 0 chr1 164297400 164297712 -78366641 + AluSx SINE Alu 1 312 0 1102 181 100 129 chr1 164297712 164297757 -78366596 + MLT1A1 LTR MaLR 320 365 0 1975 154 7 0 chr1 164297839 164298132 -78366221 - AluJb SINE Alu -16 296 2 1971 135 87 0 chr1 164298971 164299305 -78365048 + L1MA4 LINE L1 5935 6297 -3 259 271 158 15 chr1 164299657 164299790 -78364563 - MIR SINE MIR -100 162 11 262 294 104 81 chr1 164300486 164300697 -78363656 + LTR67 LTR ERVL 2 217 -340 318 239 130 0 chr1 164300988 164301080 -78363273 + LTR67 LTR ERVL 386 489 -68 1645 184 7 10 chr1 164301080 164301374 -78362979 - AluJo SINE Alu -18 294 2 207 0 0 0 chr1 164301374 164301397 -78362956 + (A)n Simple_repeat Simple_repeat 1 23 0 2151 160 16 40 chr1 164301421 164301795 -78362558 + MLT1A1 LTR MaLR 1 365 0 278 253 12 12 chr1 164301795 164301878 -78362475 + LTR67 LTR ERVL 475 557 0 22 0 0 0 chr1 164302500 164302522 -78361831 + AT_rich Low_complexity Low_complexity 1 22 0 627 261 133 74 chr1 164302558 164302764 -78361589 - L1ME4a LINE L1 -115 6006 5814 2366 96 0 3 chr1 164302764 164303065 -78361288 - AluSg SINE Alu -9 301 2 627 261 133 74 chr1 164303065 164303082 -78361271 - L1ME4a LINE L1 -307 5814 5799 1687 138 12 4 chr1 164303082 164303335 -78361018 - AluJo SINE Alu -55 257 3 627 261 133 74 chr1 164303335 164303762 -78360591 - L1ME4a LINE L1 -322 5799 5316 873 174 0 0 chr1 164304206 164304338 -78360015 - FLAM_C SINE Alu 0 133 2 206 167 0 21 chr1 164305618 164305666 -78358687 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1885 135 21 0 chr1 164305669 164305951 -78358402 - AluSx SINE Alu -24 288 1 1167 306 65 41 chr1 164306315 164306595 -78357758 - L2 LINE L2 -264 3008 2736 2198 109 3 0 chr1 164306595 164306889 -78357464 - AluSq SINE Alu -18 295 1 1167 306 65 41 chr1 164306889 164307285 -78357068 - L2 LINE L2 -536 2736 2326 1926 155 24 106 chr1 164307307 164307732 -78356621 - MLT1B LTR MaLR 0 390 1 854 178 0 7 chr1 164307794 164307929 -78356424 + FRAM SINE Alu 29 162 -14 4881 100 10 20 chr1 164307931 164308499 -78355854 + L1MA3 LINE L1 5499 6060 -245 2764 112 72 8 chr1 164308499 164308901 -78355452 - MSTA LTR MaLR 0 428 1 4881 100 10 20 chr1 164308901 164309045 -78355308 + L1MA3 LINE L1 6060 6204 -101 2709 126 62 7 chr1 164309046 164309452 -78354901 + MSTA LTR MaLR 1 428 0 9834 153 22 18 chr1 164309465 164311095 -78353258 + MSTA-int LTR MaLR 15 1651 0 809 74 9 0 chr1 164311095 164311203 -78353150 + MSTA LTR MaLR 1 109 -319 28094 127 9 13 chr1 164311214 164317621 -78346732 - L1PA8A LINE L1 -2 6444 7 1794 152 70 9 chr1 164317621 164317937 -78346416 + MSTA LTR MaLR 94 428 0 1243 230 50 30 chr1 164317971 164318033 -78346320 + L1ME1 LINE L1 5713 5772 -394 1265 221 4 25 chr1 164318033 164318277 -78346076 - MER8 DNA MER2_type 0 239 1 1243 230 50 30 chr1 164318277 164318614 -78345739 + L1ME1 LINE L1 5772 6120 -46 1700 186 3 10 chr1 164318614 164318904 -78345449 + AluJo SINE Alu 1 288 -24 544 192 35 99 chr1 164318904 164318970 -78345383 + L1MA10 LINE L1 6260 6329 -5 2333 100 7 3 chr1 164319240 164319550 -78344803 + AluSx SINE Alu 1 311 -1 1257 232 105 27 chr1 164319616 164319985 -78344368 + MLT1H LTR MaLR 48 488 -61 303 203 43 0 chr1 164320046 164320115 -78344238 + MIR SINE MIR 90 161 -101 367 222 12 30 chr1 164320115 164320282 -78344071 + (TTTA)n Simple_repeat Simple_repeat 3 166 0 235 245 0 0 chr1 164320282 164320331 -78344022 + MIR SINE MIR 189 237 -25 2649 50 0 0 chr1 164320575 164320877 -78343476 - AluY SINE Alu -9 302 1 1620 247 56 48 chr1 164320962 164321464 -78342889 + L2 LINE L2 1930 2435 -879 385 241 35 0 chr1 164321859 164322029 -78342324 + (TA)n Simple_repeat Simple_repeat 1 176 0 2192 124 3 0 chr1 164322867 164323166 -78341187 - AluSx SINE Alu -12 300 1 280 329 52 52 chr1 164323174 164323329 -78341024 - MIR SINE MIR -75 187 33 1996 159 0 0 chr1 164323338 164323634 -78340719 - AluSx SINE Alu -15 297 2 809 187 0 0 chr1 164323713 164323847 -78340506 - AluJo SINE Alu -178 134 1 204 235 0 0 chr1 164324604 164324655 -78339698 + (TA)n Simple_repeat Simple_repeat 2 52 0 27 0 0 0 chr1 164324675 164324702 -78339651 + AT_rich Low_complexity Low_complexity 1 27 0 3343 256 100 24 chr1 164324775 164325858 -78338495 + L2 LINE L2 1060 2224 -1090 267 157 0 0 chr1 164325862 164325913 -78338440 + (TA)n Simple_repeat Simple_repeat 1 51 0 243 164 49 16 chr1 164325957 164326018 -78338335 + LTR66 LTR ERVL 401 463 -147 2169 210 165 82 chr1 164326419 164327067 -78337286 + L1MC4 LINE L1 6442 7035 -773 1991 127 0 3 chr1 164327067 164327408 -78336945 + AluSx SINE Alu 1 340 0 2169 210 165 82 chr1 164327408 164327431 -78336922 + L1MC4 LINE L1 7035 7055 -753 1486 179 19 55 chr1 164327431 164327743 -78336610 + AluJb SINE Alu 2 302 -10 2169 210 165 82 chr1 164327743 164328304 -78336049 + L1MC4 LINE L1 7055 7713 -95 304 278 89 0 chr1 164328434 164328524 -78335829 + L2 LINE L2 2217 2314 -1000 1302 152 29 0 chr1 164328525 164328729 -78335624 + AluJo SINE Alu 84 293 -19 2125 126 0 16 chr1 164328731 164329040 -78335313 + AluSx SINE Alu 1 304 -8 234 83 104 21 chr1 164329041 164329089 -78335264 + L2 LINE L2 2305 2356 -958 25396 106 119 70 chr1 164329099 164334000 -78330353 + L1PA7 LINE L1 12 5224 -930 2880 10 0 0 chr1 164334000 164334308 -78330045 - AluY SINE Alu -3 308 1 25396 106 119 70 chr1 164334308 164334943 -78329410 + L1PA7 LINE L1 5224 5826 -328 24 0 0 0 chr1 164335314 164335338 -78329015 + AT_rich Low_complexity Low_complexity 1 24 0 2317 89 3 0 chr1 164335462 164335753 -78328600 + AluSx SINE Alu 1 292 -20 1717 165 11 21 chr1 164335955 164336268 -78328085 - AluJo SINE Alu 0 310 1 1843 149 0 0 chr1 164336273 164336548 -78327805 - AluJb SINE Alu -14 298 24 851 272 45 50 chr1 164336665 164337135 -78327218 - MLT1J LTR MaLR -6 505 1 1478 200 25 11 chr1 164338588 164338873 -78325480 + AluJo SINE Alu 1 289 -23 234 150 0 0 chr1 164338907 164338947 -78325406 + (A)n Simple_repeat Simple_repeat 1 40 0 1117 188 68 37 chr1 164339076 164339424 -78324929 + L1ME1 LINE L1 5812 6331 -3 382 221 19 10 chr1 164339453 164339557 -78324796 - L1MC5 LINE L1 -457 7504 7400 1708 143 77 0 chr1 164339573 164339846 -78324507 - AluJo SINE Alu -18 294 1 390 206 10 31 chr1 164339919 164340016 -78324337 + L1MC5 LINE L1 7818 7912 -49 315 343 83 0 chr1 164340038 164340146 -78324207 + MER5A DNA MER1_type 73 189 0 2375 109 0 0 chr1 164340269 164340581 -78323772 + AluSx SINE Alu 1 312 0 2255 92 0 20 chr1 164340624 164340930 -78323423 + AluSq SINE Alu 1 300 -13 2337 92 7 0 chr1 164341615 164341910 -78322443 + AluSx SINE Alu 1 297 -15 388 254 102 87 chr1 164341964 164342239 -78322114 - MLT1K LTR MaLR -183 405 127 867 158 23 0 chr1 164342400 164342533 -78321820 - FLAM_C SINE Alu -7 136 1 537 291 209 0 chr1 164342618 164342838 -78321515 - Charlie8 DNA MER1_type -2142 275 10 238 284 42 53 chr1 164344014 164344109 -78320244 - L2 LINE L2 0 3272 3179 210 340 0 19 chr1 164344952 164345058 -78319295 + C-rich Low_complexity Low_complexity 3 106 0 2157 85 11 0 chr1 164346739 164347059 -78317294 - AluSp SINE Alu 0 323 1 1703 145 0 24 chr1 164347247 164347543 -78316810 - AluJo SINE Alu -14 298 10 261 119 0 0 chr1 164348269 164348311 -78316042 + (T)n Simple_repeat Simple_repeat 1 42 0 759 11 0 0 chr1 164348311 164348398 -78315955 - L1PA2 LINE L1 0 6155 6069 1189 14 0 0 chr1 164348398 164348540 -78315813 + L1PA2 LINE L1 5931 6072 -83 346 287 56 9 chr1 164349910 164350018 -78314335 + MER112 DNA MER1_type 10 122 -138 781 211 63 26 chr1 164350031 164350221 -78314132 - MER63A DNA MER1_type -13 197 1 337 228 98 16 chr1 164350221 164350336 -78314017 + MER112 DNA MER1_type 127 251 -9 216 317 92 9 chr1 164350347 164350454 -78313899 - MIR3 SINE MIR -49 159 39 2056 111 37 3 chr1 164350671 164350969 -78313384 - AluSq SINE Alu -5 308 1 1653 171 10 16 chr1 164351014 164351318 -78313035 - AluJo SINE Alu -10 302 1 276 291 0 12 chr1 164352856 164352942 -78311411 + (TA)n Simple_repeat Simple_repeat 2 86 0 2276 123 0 0 chr1 164353502 164353810 -78310543 + AluSx SINE Alu 1 308 -4 483 103 0 103 chr1 164354388 164354485 -78309868 - L1PB4 LINE L1 -17 6139 6053 726 81 0 27 chr1 164354489 164354600 -78309753 - L1PB4 LINE L1 -189 5967 5860 2036 112 17 24 chr1 164354745 164355039 -78309314 - AluSg SINE Alu -18 292 1 1429 191 44 24 chr1 164355204 164355502 -78308851 - AluJo SINE Alu -7 305 2 508 217 54 76 chr1 164355754 164355915 -78308438 - MIR SINE MIR -16 246 88 2361 80 10 0 chr1 164355915 164356214 -78308139 + AluSc SINE Alu 1 302 -7 508 217 54 76 chr1 164356214 164356236 -78308117 - MIR SINE MIR -174 88 67 184 228 279 0 chr1 164356499 164356578 -78307775 + L3 LINE CR1 1255 1355 -222 259 102 61 0 chr1 164356831 164356880 -78307473 - L1MA9 LINE L1 -35 6277 6226 4471 163 23 48 chr1 164356916 164357241 -78307112 - L1MA9 LINE L1 -66 6246 5914 2247 90 0 0 chr1 164357241 164357518 -78306835 + AluSg SINE Alu 2 278 -32 185 65 32 0 chr1 164357518 164357549 -78306804 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4471 163 23 48 chr1 164357549 164357696 -78306657 - L1MA9 LINE L1 -397 5915 5766 369 0 0 0 chr1 164357696 164357737 -78306616 + (TG)n Simple_repeat Simple_repeat 2 42 0 4471 163 23 48 chr1 164357737 164358542 -78305811 - L1MA9 LINE L1 -546 5766 4992 2360 91 3 0 chr1 164358651 164358949 -78305404 - AluSp SINE Alu -14 299 1 224 292 183 44 chr1 164359243 164359380 -78304973 - L2 LINE L2 -103 3169 3014 351 0 0 0 chr1 164359715 164359754 -78304599 + (CA)n Simple_repeat Simple_repeat 2 40 0 2859 158 17 87 chr1 164359911 164360507 -78303846 - MLT2B3 LTR ERVL 0 554 1 808 128 227 0 chr1 164361001 164361142 -78303211 - AluSc SINE Alu -4 305 133 2238 113 3 0 chr1 164361143 164361444 -78302909 - AluSx SINE Alu -10 302 1 2202 183 34 32 chr1 164361480 164361947 -78302406 - Charlie1a DNA MER1_type -1540 1221 751 2109 143 0 6 chr1 164361947 164362261 -78302092 + AluJb SINE Alu 1 312 0 2202 183 34 32 chr1 164362261 164362317 -78302036 - Charlie1a DNA MER1_type -2010 751 697 1779 152 22 7 chr1 164362317 164362615 -78301738 + AluSx SINE Alu 1 302 0 7573 81 11 0 chr1 164362615 164363896 -78300457 - L1PA8 LINE L1 -632 5540 4245 4512 72 0 0 chr1 164363898 164364546 -78299807 + L1PA8 LINE L1 5539 6186 0 621 133 0 0 chr1 164364588 164364686 -78299667 - FLAM_A SINE Alu -2 140 43 2731 203 65 3 chr1 164364699 164365064 -78299289 - Charlie1a DNA MER1_type -2119 642 224 351 0 0 0 chr1 164365064 164365103 -78299250 + (CA)n Simple_repeat Simple_repeat 1 39 0 2731 203 65 3 chr1 164365103 164365342 -78299011 - Charlie1a DNA MER1_type -2537 224 1 265 250 104 21 chr1 164365726 164365822 -78298531 + MIR SINE MIR 13 116 -146 1950 155 0 7 chr1 164365995 164366286 -78298067 - AluJo SINE Alu -23 289 1 567 300 70 10 chr1 164366393 164366593 -78297760 - MIR SINE MIR -1 261 50 507 114 0 208 chr1 164366648 164366688 -78297665 - MER2 DNA MER2_type -222 123 76 609 243 0 29 chr1 164366688 164366824 -78297529 - FLAM_A SINE Alu -1 132 1 507 114 0 208 chr1 164366824 164366848 -78297505 - MER2 DNA MER2_type -269 76 49 2592 62 0 0 chr1 164366848 164367156 -78297197 - AluY SINE Alu -3 308 1 507 114 0 208 chr1 164367156 164367239 -78297114 - MER2 DNA MER2_type -296 49 6 327 348 72 38 chr1 164367729 164368022 -78296331 + L3b LINE CR1 1108 1410 -173 684 152 0 0 chr1 164368834 164368939 -78295414 - FLAM_C SINE Alu -32 111 7 3877 162 45 23 chr1 164368962 164369387 -78294966 - L1MC1 LINE L1 -7 6326 5875 2517 54 0 7 chr1 164369387 164369685 -78294668 - AluY SINE Alu -14 297 2 3877 162 45 23 chr1 164369685 164370043 -78294310 - L1MC1 LINE L1 -458 5875 5526 23 0 0 0 chr1 164370095 164370118 -78294235 + AT_rich Low_complexity Low_complexity 1 23 0 24 96 0 0 chr1 164370923 164370996 -78293357 + AT_rich Low_complexity Low_complexity 1 73 0 2458 57 3 3 chr1 164371385 164371682 -78292671 + AluSp SINE Alu 5 301 -12 398 332 77 45 chr1 164372445 164372965 -78291388 + L2 LINE L2 2770 3312 -1 3109 126 15 26 chr1 164374170 164374524 -78289829 - Tigger1 DNA MER2_type -1049 1369 1022 2219 110 0 0 chr1 164374524 164374823 -78289530 - AluY SINE Alu -11 300 2 3109 126 15 26 chr1 164374823 164375009 -78289344 - Tigger1 DNA MER2_type -1396 1022 835 1031 119 83 21 chr1 164375012 164375205 -78289148 + MSTC LTR MaLR 4 208 -220 1098 167 0 17 chr1 164375206 164375380 -78288973 + AluJo SINE Alu 1 171 -141 266 165 0 2 chr1 164375380 164375435 -78288918 + Alu SINE Alu 250 298 -3 * 1135 149 16 88 chr1 164375429 164375542 -78288811 + MSTC LTR MaLR 198 285 -143 2382 97 0 0 chr1 164375542 164375851 -78288502 + AluSc SINE Alu 1 309 0 1135 149 16 88 chr1 164375851 164375986 -78288367 + MSTC LTR MaLR 285 428 0 3551 149 15 8 chr1 164375991 164376641 -78287712 - Tigger1 DNA MER2_type -1583 835 181 286 98 0 0 chr1 164376638 164376679 -78287674 - Tigger1 DNA MER2_type -2377 41 1 * 183 240 154 29 chr1 164377009 164377113 -78287240 + MIR SINE MIR 66 182 -80 2109 129 7 7 chr1 164377838 164378141 -78286212 - AluSx SINE Alu -9 303 1 2204 101 14 0 chr1 164378769 164379055 -78285298 + AluSx SINE Alu 1 290 -22 394 113 0 0 chr1 164379331 164379402 -78284951 - L1MA9 LINE L1 -35 6277 6207 551 280 91 5 chr1 164379409 164379595 -78284758 - MIR SINE MIR -20 242 41 2287 106 0 3 chr1 164379752 164380053 -78284300 - AluSg SINE Alu -10 300 1 383 165 12 12 chr1 164380268 164380353 -78284000 + L1MB7 LINE L1 5953 6037 -147 412 300 44 98 chr1 164380453 164380993 -78283360 - HAL1b LINE L1 -633 715 205 330 241 121 26 chr1 164380997 164381094 -78283259 + MIR SINE MIR 3 114 -148 1060 87 0 32 chr1 164381094 164381279 -78283074 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 330 241 121 26 chr1 164381279 164381297 -78283056 + MIR SINE MIR 114 129 -133 426 284 48 119 chr1 164381313 164381350 -78283003 - HAL1 LINE L1 -1206 1301 1263 1990 119 60 0 chr1 164381350 164381635 -78282718 - AluY SINE Alu -7 304 3 426 284 48 119 chr1 164381635 164381732 -78282621 - HAL1 LINE L1 -1244 1263 1161 2372 71 0 3 chr1 164381732 164382029 -78282324 - AluY SINE Alu -1 310 15 426 284 48 119 chr1 164382029 164382415 -78281938 - HAL1 LINE L1 -1346 1161 817 629 272 74 18 chr1 164382597 164382814 -78281539 - MIR SINE MIR -1 261 33 1545 101 0 5 chr1 164383123 164383331 -78281022 + AluSq SINE Alu 88 294 -19 2364 81 3 0 chr1 164384346 164384641 -78279712 + AluSp SINE Alu 1 296 -17 2110 152 0 0 chr1 164384814 164385111 -78279242 - AluSx SINE Alu -15 297 1 499 216 20 0 chr1 164385648 164385750 -78278603 - U13 snRNA snRNA 0 104 1 693 188 15 8 chr1 164386639 164386772 -78277581 - AluJo SINE Alu -176 136 3 21 0 0 0 chr1 164386777 164386798 -78277555 + AT_rich Low_complexity Low_complexity 1 21 0 1495 90 20 5 chr1 164386813 164387013 -78277340 - AluSq SINE Alu -110 203 1 7705 20 0 0 chr1 164387174 164388501 -78275852 - L1PA4 LINE L1 -2 6153 4824 8577 176 30 58 chr1 164388501 164389458 -78274895 - L1P LINE L1 -969 5177 4195 2053 135 3 35 chr1 164389458 164389770 -78274583 - AluSx SINE Alu -10 302 1 8577 176 30 58 chr1 164389770 164390155 -78274198 - L1P LINE L1 -1951 4195 3801 1896 142 117 35 chr1 164390155 164390549 -78273804 + MSTA LTR MaLR 1 426 -2 8577 176 30 58 chr1 164390549 164391367 -78272986 - L1P LINE L1 -2345 3801 3075 245 303 30 0 chr1 164393075 164393141 -78271212 - L3 LINE CR1 -31 1546 1479 225 266 83 64 chr1 164393140 164393249 -78271104 - L2 LINE L2 0 3272 3162 * 306 308 7 14 chr1 164393254 164393400 -78270953 - L1M4 LINE L1 -2631 3515 3371 2546 215 162 26 chr1 164393475 164394411 -78269942 - L1M4 LINE L1 -1573 4573 3510 1689 174 46 28 chr1 164394460 164394787 -78269566 - MER1B DNA MER1_type 0 339 7 14334 155 28 21 chr1 164394787 164397820 -78266533 + L1MA3 LINE L1 1125 4137 -3587 421 60 194 0 chr1 164397820 164397887 -78266466 + MADE1 DNA Mariner 1 80 0 14334 155 28 21 chr1 164397887 164398662 -78265691 + L1MA3 LINE L1 4137 4905 -2819 2195 102 0 0 chr1 164398662 164398937 -78265416 + AluSx SINE Alu 1 275 -37 14334 155 28 21 chr1 164398937 164400698 -78263655 + L1MA3 LINE L1 4905 6774 -950 2260 123 0 0 chr1 164400698 164401007 -78263346 + AluSq SINE Alu 5 313 0 14334 155 28 21 chr1 164401007 164401965 -78262388 + L1MA3 LINE L1 6774 7724 0 23 33 0 0 chr1 164401973 164402003 -78262350 + AT_rich Low_complexity Low_complexity 1 30 0 525 234 0 0 chr1 164402151 164402275 -78262078 - L1MCa LINE L1 -4534 1681 1558 1357 318 81 30 chr1 164402288 164403087 -78261266 - L2 LINE L2 -462 2852 2013 328 334 71 36 chr1 164403634 164403942 -78260411 + L2 LINE L2 2994 3312 -1 25 31 0 0 chr1 164405544 164405576 -78258777 + AT_rich Low_complexity Low_complexity 1 32 0 1979 161 0 3 chr1 164405904 164406214 -78258139 + AluSx SINE Alu 1 309 -3 290 226 0 0 chr1 164407414 164407467 -78256886 - AluSx SINE Alu -12 290 238 880 206 46 11 chr1 164407470 164407645 -78256708 - AluSx SINE Alu -127 185 5 232 250 0 31 chr1 164407776 164407840 -78256513 - MLT1L LTR MaLR -419 196 135 286 295 115 55 chr1 164407944 164408327 -78256026 + L1M4 LINE L1 3809 4214 -1932 2115 139 0 7 chr1 164408374 164408507 -78255846 + AluSx SINE Alu 2 134 -178 2193 124 7 0 chr1 164408507 164408813 -78255540 + AluSg SINE Alu 1 308 -2 2115 139 0 7 chr1 164408813 164408982 -78255371 + AluSx SINE Alu 134 302 -10 463 261 171 20 chr1 164409018 164409374 -78254979 + L1M4 LINE L1 4370 4779 -1367 2047 113 21 0 chr1 164409715 164409998 -78254355 + AluSx SINE Alu 3 291 -21 427 228 83 67 chr1 164410016 164410196 -78254157 - L1ME LINE L1 -2681 3534 3352 1019 253 150 36 chr1 164410269 164411238 -78253115 - L1ME LINE L1 -4674 1541 450 858 142 0 15 chr1 164411798 164411932 -78252421 + FLAM_C SINE Alu 1 132 -1 963 247 103 52 chr1 164412073 164412403 -78251950 - L1MEc LINE L1 -3648 2567 2255 736 239 110 32 chr1 164412403 164412713 -78251640 + MER58B DNA MER1_type 4 337 -4 2185 103 0 13 chr1 164412719 164413020 -78251333 - AluSc SINE Alu -12 297 1 963 247 103 52 chr1 164413020 164413514 -78250839 - L1MEc LINE L1 -3964 2251 1704 446 251 67 14 chr1 164413513 164413736 -78250617 - L1MEc LINE L1 -5288 1108 874 * 21 0 0 0 chr1 164413835 164413856 -78250497 + AT_rich Low_complexity Low_complexity 1 21 0 22 94 0 0 chr1 164414019 164414083 -78250270 + AT_rich Low_complexity Low_complexity 1 64 0 663 219 126 52 chr1 164414922 164415192 -78249161 - LTR34 LTR ERV1 -4 695 406 2782 19 0 0 chr1 164415193 164415509 -78248844 - L1PA4 LINE L1 -408 5747 5432 3553 28 2 0 chr1 164415509 164415928 -78248425 + L1PA4 LINE L1 5731 6153 -2 522 260 126 19 chr1 164415935 164416204 -78248149 - LTR34 LTR ERV1 -298 401 104 338 246 53 18 chr1 164416221 164416335 -78248018 - MER4A LTR ERV1 -546 118 1 2489 127 23 50 chr1 164417047 164417487 -78246866 - MSTA LTR MaLR 0 428 1 1745 128 95 7 chr1 164417745 164418019 -78246334 + AluSx SINE Alu 1 298 -14 2201 55 80 0 chr1 164418021 164418295 -78246058 + AluY SINE Alu 1 296 -15 1190 179 88 12 chr1 164418437 164418677 -78245676 - MLT1A1 LTR MaLR -2 363 106 201 256 0 0 chr1 164418677 164418720 -78245633 + CT-rich Low_complexity Low_complexity 2 44 0 42854 32 21 1 chr1 164418786 164424813 -78239540 - L1PA2 LINE L1 -2 6153 2 696 316 117 34 chr1 164424845 164425282 -78239071 + L2 LINE L2 2841 3313 0 1936 157 3 3 chr1 164425755 164426067 -78238286 - AluSq SINE Alu -1 312 1 279 54 0 0 chr1 164426442 164426479 -78237874 + (TG)n Simple_repeat Simple_repeat 2 38 0 1882 135 7 0 chr1 164426558 164426862 -78237491 + AluSq SINE Alu 1 306 0 194 239 0 0 chr1 164428398 164428444 -78235909 + L2 LINE L2 3264 3309 -4 24 32 0 0 chr1 164429023 164429054 -78235299 + AT_rich Low_complexity Low_complexity 1 31 0 252 153 278 14 chr1 164429095 164429167 -78235186 - MIR SINE MIR -3 259 169 478 238 24 0 chr1 164429193 164429319 -78235034 - MER94 DNA DNA -4 130 2 24 0 0 0 chr1 164429788 164429812 -78234541 + AT_rich Low_complexity Low_complexity 1 24 0 2102 133 3 0 chr1 164430596 164430889 -78233464 - AluSq SINE Alu -17 296 3 2257 111 7 0 chr1 164431158 164431455 -78232898 - AluSx SINE Alu -13 299 1 302 186 265 10 chr1 164431611 164431713 -78232640 - L1ME4a LINE L1 -20 6101 5974 1777 183 20 20 chr1 164431965 164432309 -78232044 - MER2 DNA MER2_type 0 344 1 442 155 0 14 chr1 164432850 164432921 -78231432 + HUERS-P3b LTR ERV1 7342 7411 -7 3284 139 39 6 chr1 164432922 164433462 -78230891 + LTR9B LTR ERV1 1 558 -86 726 281 70 31 chr1 164433479 164433735 -78230618 - Tigger8 DNA MER2_type -47 619 354 373 281 0 0 chr1 164433789 164433871 -78230482 + L2 LINE L2 3232 3313 0 392 263 81 27 chr1 164433874 164434060 -78230293 - Tigger8 DNA MER2_type -317 349 154 237 224 0 0 chr1 164434623 164434681 -78229672 + (TA)n Simple_repeat Simple_repeat 1 58 0 2205 107 10 7 chr1 164435154 164435462 -78228891 - AluSg SINE Alu -1 309 1 2100 114 0 26 chr1 164436310 164436618 -78227735 - AluSq SINE Alu -11 302 3 312 228 190 6 chr1 164436629 164436787 -78227566 - L1ME4a LINE L1 0 6121 5935 2141 128 7 0 chr1 164437417 164437714 -78226639 - AluSx SINE Alu -13 299 1 22 0 0 0 chr1 164438471 164438493 -78225860 + AT_rich Low_complexity Low_complexity 1 22 0 378 286 176 30 chr1 164438632 164438968 -78225385 + L1MC4 LINE L1 5255 5639 -2169 449 180 108 18 chr1 164439110 164439221 -78225132 + L1MC4 LINE L1 6885 7005 -1037 345 235 12 0 chr1 164439767 164439852 -78224501 + HsTC2 DNA Tc2 1 86 -1812 6445 61 1 0 chr1 164439857 164440663 -78223690 - L1PA8 LINE L1 -17 6155 5349 319 179 84 21 chr1 164440663 164440758 -78223595 + HsTC2 DNA Tc2 1793 1893 -5 2210 227 56 116 chr1 164440882 164441046 -78223307 - L1MC4 LINE L1 0 8042 7870 2023 144 0 3 chr1 164441046 164441345 -78223008 - AluSx SINE Alu -14 298 1 2210 227 56 116 chr1 164441345 164442021 -78222332 - L1MC4 LINE L1 -172 7870 7296 2193 83 0 0 chr1 164442021 164442324 -78222029 + AluSc SINE Alu 2 304 0 2210 227 56 116 chr1 164442324 164442713 -78221640 - L1MC4 LINE L1 -746 7296 6885 339 123 148 0 chr1 164443323 164443404 -78220949 - L1MA8 LINE L1 0 6291 6199 1468 179 0 58 chr1 164443814 164444122 -78220231 - AluJo SINE Alu -22 290 1 38 51 0 0 chr1 164444224 164444283 -78220070 + AT_rich Low_complexity Low_complexity 1 59 0 1837 150 0 35 chr1 164444295 164444608 -78219745 - AluJo SINE Alu -10 302 1 223 302 0 0 chr1 164444749 164444802 -78219551 + L2 LINE L2 3185 3237 -35 437 210 226 23 chr1 164444827 164445007 -78219346 - MIR SINE MIR -15 247 35 615 239 162 59 chr1 164445264 164445357 -78218996 - MIR SINE MIR 0 262 180 2382 95 0 0 chr1 164445357 164445652 -78218701 - AluSg SINE Alu -15 295 1 615 239 162 59 chr1 164445652 164445780 -78218573 - MIR SINE MIR -82 180 18 695 228 21 6 chr1 164447966 164448137 -78216216 - L1MD2 LINE L1 -4 7781 6180 441 274 136 81 chr1 164448272 164449001 -78215352 + LTR41 LTR ERVL 5 773 0 283 310 58 0 chr1 164449817 164449904 -78214449 + L2 LINE L2 1513 1604 -1710 738 261 119 45 chr1 164449905 164450258 -78214095 + L2 LINE L2 2153 2531 -783 268 235 0 49 chr1 164450295 164450397 -78213956 + A-rich Low_complexity Low_complexity 3 99 0 22 35 0 0 chr1 164450880 164450909 -78213444 + AT_rich Low_complexity Low_complexity 1 29 0 625 168 26 0 chr1 164450969 164451082 -78213271 + AluSg/x SINE Alu 186 301 -11 213 108 0 0 chr1 164451470 164451507 -78212846 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 555 255 143 0 chr1 164451641 164451802 -78212551 + MIR SINE MIR 48 231 -31 5752 172 100 35 chr1 164451977 164453481 -78210872 + Tigger6b DNA MER2_type 1 1597 0 2355 75 0 13 chr1 164453715 164454022 -78210331 - AluY SINE Alu -8 303 1 23 0 0 0 chr1 164454376 164454399 -78209954 + AT_rich Low_complexity Low_complexity 1 23 0 2184 78 0 53 chr1 164454437 164454758 -78209595 - AluY SINE Alu -2 309 6 271 254 272 35 chr1 164454963 164455136 -78209217 + MIR SINE MIR 49 262 0 197 321 18 0 chr1 164455299 164455355 -78208998 + L2 LINE L2 3114 3170 -102 258 330 39 0 chr1 164455613 164455716 -78208637 - MIR3 SINE MIR -38 170 64 846 206 0 32 chr1 164455935 164456124 -78208229 + L1PB4 LINE L1 5972 6154 -2 388 296 45 30 chr1 164457063 164457195 -78207158 + MIR SINE MIR 28 161 -101 180 395 64 18 chr1 164458830 164458939 -78205414 - L2 LINE L2 -25 3247 3134 519 318 71 9 chr1 164459524 164459735 -78204618 - L3 LINE CR1 -98 1479 1256 1165 211 127 0 chr1 164459817 164460125 -78204228 + MER7A DNA MER2_type 1 345 -1 297 0 0 0 chr1 164460126 164460159 -78204194 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 289 0 0 chr1 164460664 164460709 -78203644 + polypurine Low_complexity Low_complexity 3 47 0 21 89 0 0 chr1 164460871 164460927 -78203426 + AT_rich Low_complexity Low_complexity 1 56 0 1362 201 32 39 chr1 164461680 164461964 -78202389 - AluJo SINE Alu -30 282 1 24 67 0 0 chr1 164462085 164462130 -78202223 + AT_rich Low_complexity Low_complexity 1 45 0 206 167 21 0 chr1 164463015 164463063 -78201290 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 28 0 0 0 chr1 164463550 164463578 -78200775 + AT_rich Low_complexity Low_complexity 1 28 0 2002 108 31 10 chr1 164463640 164463928 -78200425 + AluSq SINE Alu 1 294 -19 25 0 0 0 chr1 164464753 164464778 -78199575 + AT_rich Low_complexity Low_complexity 1 25 0 396 0 0 0 chr1 164465568 164465612 -78198741 + (GA)n Simple_repeat Simple_repeat 1 44 0 5809 67 66 0 chr1 164466294 164467069 -78197284 - LTR12 LTR ERV1 0 826 1 378 248 102 7 chr1 164467232 164467246 -78197107 - L1MA10 LINE L1 -1 6333 6320 2425 217 121 31 chr1 164467246 164468640 -78195713 - L1ME1 LINE L1 -5 6161 4894 1857 162 0 13 chr1 164468640 164468954 -78195399 + AluJb SINE Alu 1 310 -2 2425 217 121 31 chr1 164468954 164469017 -78195336 - L1ME1 LINE L1 -1272 4894 4838 2061 115 4 0 chr1 164469017 164469323 -78195030 - AluSq SINE Alu 0 310 4 2425 217 121 31 chr1 164469323 164469493 -78194860 - L1ME1 LINE L1 -1328 4838 4398 3744 149 90 8 chr1 164469502 164470259 -78194094 - L1MA9 LINE L1 -18 6498 5680 327 119 0 0 chr1 164470262 164470321 -78194032 - FLAM_A SINE Alu 0 133 75 10213 226 91 25 chr1 164470321 164470534 -78193819 - L1MA9 LINE L1 -1443 4907 4709 2259 106 0 0 chr1 164470534 164470836 -78193517 - AluSq SINE Alu -11 302 1 10213 226 91 25 chr1 164470836 164473013 -78191340 - L1MA9 LINE L1 -1641 4709 2676 1893 167 0 10 chr1 164473013 164473312 -78191041 - AluSx SINE Alu -16 296 1 10213 226 91 25 chr1 164473312 164474579 -78189774 - L1MA9 LINE L1 -3674 2676 1493 1562 195 3 18 chr1 164474579 164474861 -78189492 - AluJo SINE Alu -34 278 1 10213 226 91 25 chr1 164474861 164476130 -78188223 - L1MA9 LINE L1 -4857 1493 1 408 254 156 0 chr1 164476143 164476269 -78188084 - L1ME1 LINE L1 -1742 4404 4299 1885 161 7 3 chr1 164476269 164476579 -78187774 - AluJo SINE Alu -1 311 1 408 254 156 0 chr1 164476579 164476676 -78187677 - L1ME1 LINE L1 -1847 4299 4146 2801 228 72 49 chr1 164476699 164477539 -78186814 - L1ME1 LINE L1 -2200 3946 3127 342 0 0 0 chr1 164477539 164477577 -78186776 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1573 171 46 0 chr1 164477577 164477840 -78186513 - AluJo SINE Alu -32 280 6 2801 228 72 49 chr1 164477840 164478285 -78186068 - L1ME1 LINE L1 -3018 3128 2630 454 255 26 39 chr1 164478371 164478524 -78185829 - MIR SINE MIR -7 255 105 219 290 0 32 chr1 164479275 164479337 -78185016 - L2 LINE L2 -9 3263 3204 480 270 142 34 chr1 164479507 164479711 -78184642 + MIR SINE MIR 37 262 0 865 309 129 44 chr1 164480007 164480440 -78183913 - L2 LINE L2 -495 2819 2424 2115 119 0 3 chr1 164480440 164480734 -78183619 - AluSc SINE Alu -14 295 3 1647 175 10 10 chr1 164480736 164480899 -78183454 - AluJo SINE Alu -13 299 134 2101 118 3 10 chr1 164480899 164481203 -78183150 - AluSg SINE Alu -8 302 1 1647 175 10 10 chr1 164481203 164481330 -78183023 - AluJo SINE Alu -177 135 9 865 309 129 44 chr1 164481330 164481802 -78182551 - L2 LINE L2 -890 2424 1834 198 71 0 0 chr1 164482466 164482494 -78181859 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 411 161 91 9 chr1 164482632 164482747 -78181606 - MER39 LTR ERV1 0 666 411 1577 153 88 16 chr1 164482747 164483067 -78181286 - MER61A LTR ERV1 0 343 1 17397 90 41 11 chr1 164483067 164485763 -78178590 - MER61A-int LTR ERV1 0 5217 2390 2221 102 3 13 chr1 164485763 164486068 -78178285 + AluSp SINE Alu 1 302 -11 17397 90 41 11 chr1 164486068 164486150 -78178203 - MER61A-int LTR ERV1 -2827 2390 2312 270 163 0 0 chr1 164486151 164486194 -78178159 + Alu SINE Alu 2 44 -258 1354 125 0 5 chr1 164486194 164486386 -78177967 + AluSg/x SINE Alu 90 280 -29 219 36 0 0 chr1 164486386 164486414 -78177939 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 3849 198 81 59 chr1 164486450 164487555 -78176798 - LTR28 LTR ERV1 0 1755 1 194 372 77 0 chr1 164487555 164487633 -78176720 - L2 LINE L2 -325 2988 2905 218 299 23 46 chr1 164488752 164488839 -78175514 - MER5B DNA MER1_type 0 178 94 1413 250 46 25 chr1 164489380 164489812 -78174541 - L1M4 LINE L1 -1922 4224 3784 201 186 10 69 chr1 164489814 164489916 -78174437 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 22 0 0 0 chr1 164489932 164489954 -78174399 + AT_rich Low_complexity Low_complexity 1 22 0 204 196 18 18 chr1 164489972 164490028 -78174325 + (TA)n Simple_repeat Simple_repeat 2 57 0 247 243 0 12 chr1 164490097 164490171 -78174182 + L1ME1 LINE L1 6057 6127 -37 2009 124 13 10 chr1 164490904 164491202 -78173151 - AluSx SINE Alu -10 302 4 22 0 0 0 chr1 164491207 164491229 -78173124 + AT_rich Low_complexity Low_complexity 1 22 0 6640 36 9 0 chr1 164491295 164492094 -78172259 - L1PA5 LINE L1 -8 6146 5341 843 297 54 0 chr1 164492520 164492759 -78171594 - MIR SINE MIR -5 257 6 9899 181 27 25 chr1 164492802 164495733 -78168620 - L1MB5 LINE L1 -1 7592 4718 2060 225 49 2 chr1 164495724 164496218 -78168135 - L1MB5 LINE L1 -3250 4315 3799 * 9727 185 91 82 chr1 164496230 164496602 -78167751 - L1MA1 LINE L1 0 7721 7354 2021 153 38 16 chr1 164496602 164496969 -78167384 - THE1C LTR MaLR 0 375 1 9727 185 91 82 chr1 164496969 164497126 -78167227 - L1MA1 LINE L1 -367 7354 7200 2236 107 3 3 chr1 164497126 164497426 -78166927 - AluSq SINE Alu -13 300 1 9727 185 91 82 chr1 164497426 164498557 -78165796 - L1MA1 LINE L1 -521 7200 6081 1440 74 16 16 chr1 164498557 164498746 -78165607 - AluY SINE Alu -122 189 1 9727 185 91 82 chr1 164498746 164501141 -78163212 - L1MA1 LINE L1 -1640 6081 3418 244 163 0 0 chr1 164501142 164501191 -78163162 - Alu SINE Alu -5 297 249 13505 170 68 10 chr1 164501191 164503757 -78160596 - L1MA1 LINE L1 -4839 2726 12 1529 232 53 72 chr1 164503755 164503971 -78160382 - L1MB5 LINE L1 -3753 3812 3593 * 216 0 0 0 chr1 164503971 164503995 -78160358 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1529 232 53 72 chr1 164503995 164504100 -78160253 - L1MB5 LINE L1 -3972 3593 3488 536 15 29 0 chr1 164504100 164504168 -78160185 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1529 232 53 72 chr1 164504168 164504736 -78159617 - L1MB5 LINE L1 -4077 3488 2938 * 2020 233 40 27 chr1 164504719 164505375 -78158978 - L1M4 LINE L1 -1651 4495 3832 1827 242 74 7 chr1 164505606 164506040 -78158313 - L1ME1 LINE L1 -7 6159 5756 6205 132 21 28 chr1 164506040 164507118 -78157235 + MER11C LTR ERVK 1 1071 0 1827 242 74 7 chr1 164507118 164507801 -78156552 - L1ME1 LINE L1 -410 5756 4942 1397 266 41 24 chr1 164507801 164508218 -78156135 - MLT1F LTR MaLR -46 496 73 265 320 0 0 chr1 164508366 164508444 -78155909 - MLT1J1 LTR MaLR -354 92 15 225 393 93 13 chr1 164508744 164508894 -78155459 - MIR SINE MIR -81 181 20 618 339 88 41 chr1 164509761 164510542 -78153811 - L2 LINE L2 -748 2566 1749 186 256 0 0 chr1 164510688 164510727 -78153626 + L2 LINE L2 2924 2962 -310 13624 219 50 38 chr1 164510873 164513476 -78150877 + L1MA6 LINE L1 7 2577 -4655 537 58 0 0 chr1 164513476 164513545 -78150808 + (TA)n Simple_repeat Simple_repeat 2 70 0 13624 219 50 38 chr1 164513545 164514007 -78150346 + L1MA6 LINE L1 2577 3032 -4200 2133 131 0 0 chr1 164514007 164514297 -78150056 + AluSx SINE Alu 1 290 -22 13624 219 50 38 chr1 164514297 164515431 -78148922 + L1MA6 LINE L1 3032 4151 -3081 283 128 0 0 chr1 164515431 164515470 -78148883 + LTR8 LTR ERV1 549 587 -104 13624 219 50 38 chr1 164515470 164515817 -78148536 + L1MA6 LINE L1 4151 4492 -2740 1561 199 0 18 chr1 164515817 164516128 -78148225 + AluJo SINE Alu 1 306 0 13624 219 50 38 chr1 164516128 164517184 -78147169 + L1MA6 LINE L1 4492 6489 -743 295 93 93 0 chr1 164517184 164517199 -78147154 - Alu SINE Alu -6 296 284 2318 42 3 0 chr1 164517199 164517487 -78146866 - L1PA4 LINE L1 -3 6152 5864 295 93 93 0 chr1 164517487 164517525 -78146828 - Alu SINE Alu -18 284 238 2060 120 3 0 chr1 164517900 164518215 -78146138 - AluSx SINE Alu 0 316 1 4391 140 31 12 chr1 164518215 164518986 -78145367 + L1MA6 LINE L1 6473 7258 -2 292 261 11 0 chr1 164519080 164519168 -78145185 + L1M4b LINE L1 91 179 -6680 331 305 122 30 chr1 164519429 164519626 -78144727 + L1M4b LINE L1 830 1044 -5811 1167 259 53 49 chr1 164519824 164520270 -78144083 + L2 LINE L2 2607 3051 -262 192 323 48 0 chr1 164521341 164521403 -78142950 - L2 LINE L2 -1 3271 3207 1713 172 0 40 chr1 164521641 164521944 -78142409 - AluJo SINE Alu -21 291 1 344 283 224 7 chr1 164522055 164522207 -78142146 - MER5A DNA MER1_type -1 188 4 441 173 0 0 chr1 164522222 164522303 -78142050 - MIR SINE MIR -58 204 124 288 0 0 0 chr1 164522373 164522405 -78141948 + (TG)n Simple_repeat Simple_repeat 1 32 0 201 74 0 0 chr1 164522405 164522432 -78141921 + (GA)n Simple_repeat Simple_repeat 2 28 0 1143 204 29 12 chr1 164522566 164522811 -78141542 - MLT1E1 LTR MaLR 0 654 406 215 307 55 71 chr1 164522949 164523076 -78141277 - L2 LINE L2 -473 2841 2717 33 0 0 0 chr1 164523328 164523361 -78140992 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr1 164524178 164524210 -78140143 + AT_rich Low_complexity Low_complexity 1 32 0 285 219 0 0 chr1 164524354 164524418 -78139935 + MER58 DNA MER1_type 56 119 -96 291 189 19 0 chr1 164524426 164524479 -78139874 + MER58 DNA MER1_type 2365 2418 -2 2278 107 0 0 chr1 164525132 164525422 -78138931 - AluSx SINE Alu -18 294 5 5394 93 67 0 chr1 164525829 164526697 -78137656 - L1PA11 LINE L1 -2 6172 5233 23 0 0 0 chr1 164526872 164526895 -78137458 + AT_rich Low_complexity Low_complexity 1 23 0 2241 107 3 0 chr1 164528260 164528558 -78135795 - AluSx SINE Alu -13 299 1 457 277 188 30 chr1 164528605 164529073 -78135280 - L1ME4a LINE L1 -212 5909 5372 193 328 15 0 chr1 164529781 164529848 -78134505 - MIR SINE MIR 0 262 195 13250 180 38 11 chr1 164530293 164532991 -78131362 - L1 LINE L1 -978 6587 3964 261 0 0 0 chr1 164532991 164533020 -78131333 + (TG)n Simple_repeat Simple_repeat 2 30 0 2160 82 0 7 chr1 164533020 164533301 -78131052 - AluY SINE Alu -20 291 13 13250 180 38 11 chr1 164533301 164533790 -78130563 - L1 LINE L1 -3601 3964 3300 615 76 0 0 chr1 164533790 164533869 -78130484 + MADE1 DNA Mariner 1 79 -1 13250 180 38 11 chr1 164533869 164533951 -78130402 - L1 LINE L1 -4265 3300 3222 262 41 20 41 chr1 164533951 164534000 -78130353 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 6126 75 31 63 chr1 164534000 164536589 -78127764 - SVA Other Other -518 1363 57 306 0 0 0 chr1 164536589 164536623 -78127730 + (AGGGGG)n Simple_repeat Simple_repeat 2 35 0 9426 162 32 46 chr1 164536623 164537305 -78127048 - L1 LINE L1 -4337 3228 2538 2236 73 0 24 chr1 164537305 164537627 -78126726 - AluY SINE Alu 0 315 1 9426 162 32 46 chr1 164537627 164539381 -78124972 - L1 LINE L1 -5027 2538 166 49 18 0 0 chr1 164539758 164539814 -78124539 + AT_rich Low_complexity Low_complexity 1 56 0 3160 34 0 0 chr1 164540109 164540495 -78123858 - L1P LINE L1 -922 5224 4839 5502 31 0 1 chr1 164540495 164541144 -78123209 + L1PA4 LINE L1 5505 6152 -3 290 326 98 0 chr1 164542363 164542495 -78121858 - MIR SINE MIR 0 262 118 915 284 17 8 chr1 164543378 164543614 -78120739 - MIR SINE MIR -1 261 24 3169 145 17 26 chr1 164543628 164544202 -78120151 - MER101B LTR ERV1 -1 569 1 336 349 163 24 chr1 164544324 164544576 -78119777 - L2 LINE L2 -1 3271 2985 859 225 35 10 chr1 164545216 164545416 -78118937 + MIR SINE MIR 29 233 -29 25 31 0 0 chr1 164546357 164546389 -78117964 + AT_rich Low_complexity Low_complexity 1 32 0 1964 88 0 4 chr1 164546394 164546643 -78117710 + AluY SINE Alu 1 248 -63 7297 177 15 34 chr1 164546644 164547308 -78117045 - L1 LINE L1 -1341 4805 4130 6398 81 16 16 chr1 164547308 164549043 -78115310 - L1PA13 LINE L1 -12 6151 4412 7297 177 15 34 chr1 164549043 164549763 -78114590 - L1 LINE L1 -2016 4130 3451 2892 3 0 0 chr1 164549763 164550073 -78114280 - AluYa5 SINE Alu -1 310 1 7297 177 15 34 chr1 164550073 164550247 -78114106 - L1 LINE L1 -2695 3451 3275 3004 266 154 23 chr1 164550248 164551451 -78112902 - L1M1 LINE L1 -5872 1693 19 2272 100 0 28 chr1 164552007 164552327 -78112026 + AluSx SINE Alu 1 311 -1 318 272 82 67 chr1 164553684 164553879 -78110474 - L1MC/D LINE L1 -1971 5837 5640 372 248 144 70 chr1 164553915 164554185 -78110168 - L1MC/D LINE L1 -552 5569 5280 1851 157 24 3 chr1 164554716 164555003 -78109350 - AluJb SINE Alu -19 293 1 21 0 0 0 chr1 164555049 164555070 -78109283 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr1 164555983 164556007 -78108346 + (T)n Simple_repeat Simple_repeat 1 24 0 34 72 0 0 chr1 164556687 164556756 -78107597 + AT_rich Low_complexity Low_complexity 1 69 0 25 75 0 0 chr1 164557108 164557161 -78107192 + AT_rich Low_complexity Low_complexity 1 53 0 257 155 0 12 chr1 164557618 164557679 -78106674 - LTR37B LTR ERV1 -39 421 330 * 1292 239 65 96 chr1 164557677 164558257 -78106096 - LTR24B LTR ERV1 -7 569 1 300 176 55 55 chr1 164558357 164558448 -78105905 - LTR37A LTR ERV1 -257 169 79 373 304 73 49 chr1 164558770 164559099 -78105254 - LTR33A LTR ERVL -4 519 183 444 306 49 33 chr1 164559244 164559427 -78104926 - LTR50 LTR ERVL -603 192 7 193 382 41 16 chr1 164560157 164560280 -78104073 + MIR SINE MIR 3 128 -134 1092 259 91 24 chr1 164560807 164561301 -78103052 + L1ME1 LINE L1 3050 3576 -2570 1824 154 7 11 chr1 164561304 164561583 -78102770 + AluSx SINE Alu 3 280 -32 219 69 0 0 chr1 164561585 164561614 -78102739 + (TAAAG)n Simple_repeat Simple_repeat 1 29 0 664 151 24 24 chr1 164561616 164561782 -78102571 + GA-rich Low_complexity Low_complexity 2 167 0 4307 229 37 38 chr1 164561784 164563065 -78101288 + L1ME1 LINE L1 3562 4840 -1306 1141 147 5 0 chr1 164563065 164563256 -78101097 + L1ME1 LINE L1 5333 5524 -660 25 31 0 0 chr1 164563279 164563311 -78101042 + AT_rich Low_complexity Low_complexity 1 32 0 42786 32 21 1 chr1 164563311 164569335 -78095018 - L1PA2 LINE L1 -7 6148 2 2279 225 71 24 chr1 164569335 164569956 -78094397 + L1ME1 LINE L1 5512 6161 -5 201 147 0 0 chr1 164570028 164570062 -78094291 + (A)n Simple_repeat Simple_repeat 1 34 0 239 333 0 0 chr1 164570253 164570328 -78094025 + L2 LINE L2 3235 3309 -4 2973 268 123 19 chr1 164570552 164571690 -78092663 - L2 LINE L2 -589 2725 1469 733 246 48 11 chr1 164571688 164571875 -78092478 - MIR SINE MIR -2 260 67 * 187 138 0 0 chr1 164571879 164571908 -78092445 - MIR SINE MIR -156 106 78 312 286 26 13 chr1 164571909 164571986 -78092367 - MIR SINE MIR -156 106 29 240 59 0 0 chr1 164571994 164572028 -78092325 + (TG)n Simple_repeat Simple_repeat 2 35 0 2227 84 10 3 chr1 164572028 164572325 -78092028 - AluSq SINE Alu -14 299 1 250 267 112 52 chr1 164572346 164572462 -78091891 - L2 LINE L2 -2003 1311 1189 180 0 0 0 chr1 164572745 164572765 -78091588 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 26 30 0 0 chr1 164573269 164573302 -78091051 + AT_rich Low_complexity Low_complexity 1 33 0 208 338 32 64 chr1 164575000 164575157 -78089196 + L3b LINE CR1 1432 1583 0 439 271 34 17 chr1 164575216 164575334 -78089019 - L2 LINE L2 0 3313 3194 25 75 0 0 chr1 164575977 164576030 -78088323 + AT_rich Low_complexity Low_complexity 1 53 0 400 292 208 22 chr1 164576094 164576406 -78087947 - L2 LINE L2 -620 2694 2325 1255 173 37 83 chr1 164576861 164577161 -78087192 - AluJo SINE Alu -26 286 1 21 0 0 0 chr1 164577185 164577206 -78087147 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr1 164580254 164580294 -78084059 + AT_rich Low_complexity Low_complexity 1 40 0 29 28 0 0 chr1 164580469 164580505 -78083848 + AT_rich Low_complexity Low_complexity 1 36 0 994 268 58 19 chr1 164580520 164580882 -78083471 + Charlie7 DNA MER1_type 35 410 -2202 751 247 89 23 chr1 164580916 164581220 -78083133 + Charlie7 DNA MER1_type 1726 2049 -563 720 206 148 0 chr1 164581227 164581382 -78082971 + FAM SINE Alu 1 46 -3 501 243 248 0 chr1 164581387 164581601 -78082752 + Charlie7 DNA MER1_type 2060 2326 -286 1280 183 8 8 chr1 164581602 164581843 -78082510 + L1MB7 LINE L1 5910 6150 -34 345 247 152 6 chr1 164581885 164582063 -78082290 + Charlie7 DNA MER1_type 2392 2595 -17 1615 178 0 26 chr1 164582376 164582679 -78081674 + AluJo SINE Alu 1 295 -17 775 240 28 132 chr1 164583247 164583817 -78080536 - MER77 LTR ERV1 -9 596 214 387 313 20 20 chr1 164583962 164584109 -78080244 - MER77 LTR ERV1 -408 197 51 2290 109 33 11 chr1 164585103 164585470 -78078883 - THE1C LTR MaLR 0 375 1 294 369 8 33 chr1 164585871 164585993 -78078360 + L2 LINE L2 3134 3252 -20 853 250 39 10 chr1 164586727 164586935 -78077418 + MIR SINE MIR 30 243 -19 317 346 197 12 chr1 164587154 164587489 -78076864 - L2 LINE L2 0 3272 2876 214 372 33 16 chr1 164587502 164587623 -78076730 + L2 LINE L2 3191 3313 0 182 263 162 30 chr1 164587627 164587726 -78076627 - MIR SINE MIR -30 232 121 384 77 0 0 chr1 164588728 164588780 -78075573 + (TG)n Simple_repeat Simple_repeat 2 53 0 604 143 20 0 chr1 164588790 164588888 -78075465 - FAM SINE Alu -2 183 84 483 278 139 0 chr1 164588929 164589102 -78075251 + MIR SINE MIR 47 243 -19 359 343 70 67 chr1 164589524 164589824 -78074529 - L2 LINE L2 0 3272 2972 216 264 57 0 chr1 164590133 164590186 -78074167 - L2 LINE L2 -3 3310 3255 27 29 0 0 chr1 164590186 164590220 -78074133 + AT_rich Low_complexity Low_complexity 1 34 0 2172 131 0 0 chr1 164591215 164591527 -78072826 + AluJb SINE Alu 1 312 0 1082 175 152 0 chr1 164592175 164592386 -78071967 + AluJo SINE Alu 3 245 -67 267 89 89 0 chr1 164592386 164592431 -78071922 + MADE1 DNA Mariner 31 79 -1 203 261 0 15 chr1 164592798 164592863 -78071490 + T-rich Low_complexity Low_complexity 2 65 0 787 212 12 30 chr1 164592898 164593063 -78071290 - Tigger2 DNA MER2_type -11 2707 2546 * 2597 169 48 36 chr1 164593059 164593581 -78070772 - Tigger2 DNA MER2_type -1862 856 329 5077 138 19 6 chr1 164593581 164594646 -78069707 - L1PA16 LINE L1 0 6166 5089 4793 53 20 31 chr1 164594650 164595795 -78068558 + MER11A LTR ERVK 1 1266 0 10152 181 38 16 chr1 164595800 164599516 -78064837 - L1PA15-16 LINE L1 -1061 5788 1283 1720 156 34 12 chr1 164599516 164599836 -78064517 - Tigger2 DNA MER2_type -2391 327 1 203 156 0 0 chr1 164601533 164601565 -78062788 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr1 164601968 164601991 -78062362 + AT_rich Low_complexity Low_complexity 1 23 0 448 36 0 0 chr1 164602582 164602637 -78061716 + MADE1 DNA Mariner 25 79 -1 2121 124 3 0 chr1 164604278 164604569 -78059784 + AluSx SINE Alu 3 294 -18 461 262 221 20 chr1 164604735 164604884 -78059469 - MER5A DNA MER1_type -7 182 4 23 0 0 0 chr1 164605719 164605742 -78058611 + AT_rich Low_complexity Low_complexity 1 23 0 2447 60 0 3 chr1 164606192 164606494 -78057859 - AluY SINE Alu -10 301 1 322 154 0 46 chr1 164606494 164606559 -78057794 - MER69 DNA AcHobo -7 2519 2458 294 254 0 0 chr1 164606577 164606636 -78057717 - MER69 DNA AcHobo -1094 132 74 231 335 66 82 chr1 164606764 164606946 -78057407 + L2 LINE L2 2537 2715 -599 768 272 44 26 chr1 164606986 164607258 -78057095 - L1MEc LINE L1 -4600 1796 1520 2212 123 0 0 chr1 164607278 164607588 -78056765 - AluSx SINE Alu -2 310 1 719 269 7 0 chr1 164607612 164607761 -78056592 + MER45A DNA AcHobo 1 150 -28 22 0 0 0 chr1 164607945 164607967 -78056386 + AT_rich Low_complexity Low_complexity 1 22 0 289 245 9 47 chr1 164608012 164608118 -78056235 - MIR SINE MIR -56 206 105 2140 112 27 0 chr1 164608191 164608487 -78055866 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr1 164609144 164609165 -78055188 + AT_rich Low_complexity Low_complexity 1 21 0 205 310 0 0 chr1 164609203 164609261 -78055092 + CT-rich Low_complexity Low_complexity 3 60 0 360 0 0 0 chr1 164612664 164612704 -78051649 + (TG)n Simple_repeat Simple_repeat 1 40 0 369 205 142 39 chr1 164613325 164613452 -78050901 - L2 LINE L2 -4 3309 3170 278 261 76 42 chr1 164613722 164613841 -78050512 - L2 LINE L2 -2 3270 3148 2229 97 3 3 chr1 164614979 164615287 -78049066 + AluSg SINE Alu 1 308 -2 1577 141 100 0 chr1 164615622 164615892 -78048461 + AluJb SINE Alu 1 297 -15 2225 156 28 0 chr1 164617484 164617875 -78046478 - L1PA16 LINE L1 -9 6157 5756 2212 120 0 0 chr1 164618046 164618355 -78045998 - AluSc SINE Alu 0 309 1 595 303 71 9 chr1 164618559 164618770 -78045583 - MIR SINE MIR -38 224 1 3044 200 59 69 chr1 164619462 164619622 -78044731 - L1ME2 LINE L1 -37 6127 5967 429 20 0 0 chr1 164619622 164619672 -78044681 + (CA)n Simple_repeat Simple_repeat 2 51 0 3044 200 59 69 chr1 164619672 164620551 -78043802 - L1ME2 LINE L1 -197 5967 5106 1620 173 14 7 chr1 164620551 164620834 -78043519 - AluJo SINE Alu -24 288 4 3044 200 59 69 chr1 164620834 164621155 -78043198 - L1ME2 LINE L1 -1058 5106 4783 7480 33 3 0 chr1 164621174 164622264 -78042089 - L1PA4 LINE L1 0 6155 5064 11527 45 0 1 chr1 164622264 164623694 -78040659 + L1P LINE L1 664 2092 -4054 1714 231 104 50 chr1 164623693 164623956 -78040397 - L1ME2 LINE L1 -1381 4765 4517 * 2154 98 10 10 chr1 164623956 164624253 -78040100 + AluSx SINE Alu 1 297 -15 1714 231 104 50 chr1 164624253 164624264 -78040089 - L1ME2 LINE L1 -1629 4517 4508 297 0 0 0 chr1 164624264 164624297 -78040056 + (TA)n Simple_repeat Simple_repeat 1 33 0 1714 231 104 50 chr1 164624297 164624774 -78039579 - L1ME2 LINE L1 -1638 4508 3973 419 303 31 49 chr1 164625304 164625466 -78038887 - L2 LINE L2 -9 3304 3146 202 319 0 0 chr1 164625496 164625543 -78038810 - L2 LINE L2 -259 3054 3008 499 362 41 18 chr1 164625761 164625979 -78038374 - L2 LINE L2 -540 2774 2552 1792 114 76 14 chr1 164626085 164626375 -78037978 - AluSx SINE Alu -2 310 3 41 82 0 0 chr1 164626531 164626628 -78037725 + AT_rich Low_complexity Low_complexity 1 97 0 2070 124 3 0 chr1 164626972 164627297 -78037056 + AluSq SINE Alu 1 326 0 34 24 0 0 chr1 164627716 164627757 -78036596 + AT_rich Low_complexity Low_complexity 1 41 0 236 86 0 0 chr1 164628072 164628107 -78036246 - L1PA16 LINE L1 -4 6162 6128 5533 144 45 7 chr1 164628123 164629838 -78034515 - L1MA4 LINE L1 -9 6291 4507 3210 146 26 8 chr1 164629832 164630435 -78033918 - L1MA4 LINE L1 -2364 3782 3169 * 556 240 77 51 chr1 164630461 164630657 -78033696 + MIR SINE MIR 58 258 -4 28 0 0 0 chr1 164635746 164635774 -78028579 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 164636517 164636552 -78027801 + AT_rich Low_complexity Low_complexity 1 35 0 422 275 133 28 chr1 164636937 164637148 -78027205 - MIR SINE MIR -28 234 2 232 343 46 46 chr1 164637851 164638067 -78026286 + MIR SINE MIR 47 262 0 2080 113 0 0 chr1 164638072 164638380 -78025973 - AluY SINE Alu 0 308 1 2246 104 0 0 chr1 164639502 164639799 -78024554 + AluSc SINE Alu 1 297 -12 21 0 0 0 chr1 164639804 164639825 -78024528 + AT_rich Low_complexity Low_complexity 1 21 0 2105 87 7 10 chr1 164640071 164640370 -78023983 - AluY SINE Alu -13 298 1 26 30 0 0 chr1 164640914 164640947 -78023406 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr1 164640986 164641018 -78023335 + AT_rich Low_complexity Low_complexity 1 32 0 1974 118 6 65 chr1 164642997 164643320 -78021033 - AluSx SINE Alu -8 304 1 210 258 43 86 chr1 164643491 164643584 -78020769 - L2 LINE L2 0 3313 3225 649 238 104 6 chr1 164643666 164643830 -78020523 + MER58A DNA MER1_type 30 209 -15 1621 160 45 79 chr1 164644928 164645284 -78019069 + MER2 DNA MER2_type 1 344 0 434 300 35 6 chr1 164646029 164646199 -78018154 - L1ME LINE L1 -420 5701 5527 267 217 0 0 chr1 164646349 164646409 -78017944 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 831 317 136 15 chr1 164647572 164648049 -78016304 - L3 LINE CR1 -361 1216 682 1923 140 16 0 chr1 164648049 164648357 -78015996 - L1PA16 LINE L1 -4 6162 5850 6924 28 1 12 chr1 164648359 164649191 -78015162 + L1PA3 LINE L1 5330 6152 -3 1242 88 0 59 chr1 164649194 164649398 -78014955 + L1P4 LINE L1 5352 5543 -618 421 228 82 114 chr1 164650445 164650700 -78013653 - L3 LINE CR1 -154 1423 1177 * 471 234 39 117 chr1 164650698 164650729 -78013624 - L2 LINE L2 0 3313 3281 2078 117 0 0 chr1 164650729 164651019 -78013334 - AluSx SINE Alu -22 290 1 471 234 39 117 chr1 164651019 164651243 -78013110 - L2 LINE L2 -32 3281 3078 241 339 233 0 chr1 164651531 164651720 -78012633 - L3 LINE CR1 -535 1042 810 218 404 68 21 chr1 164651775 164652010 -78012343 - L3 LINE CR1 -882 695 450 2098 121 0 0 chr1 164652024 164652306 -78012047 + AluSx SINE Alu 1 282 -30 485 308 194 0 chr1 164652325 164652536 -78011817 + MIR SINE MIR 3 254 -8 327 306 45 30 chr1 164653161 164653295 -78011058 - MIR SINE MIR -107 155 20 183 278 0 0 chr1 164653499 164653535 -78010818 - L3 LINE CR1 -1 1576 1541 23 33 0 0 chr1 164653582 164653612 -78010741 + AT_rich Low_complexity Low_complexity 1 30 0 209 132 0 26 chr1 164653654 164653692 -78010661 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 400 233 60 35 chr1 164654266 164654382 -78009971 + L2 LINE L2 3181 3299 -14 455 301 45 23 chr1 164654912 164655088 -78009265 + MER5A DNA MER1_type 7 186 -3 2087 129 0 16 chr1 164656004 164656314 -78008039 + AluSx SINE Alu 1 305 -7 1215 173 38 144 chr1 164657298 164657715 -78006638 + MLT1A2 LTR MaLR 1 373 -1 2618 197 54 11 chr1 164657932 164658469 -78005884 - MER68 LTR ERV1 -2 560 1 227 295 11 63 chr1 164659594 164659689 -78004664 + L2 LINE L2 3224 3313 0 246 244 30 148 chr1 164660037 164660115 -78004238 + MIR SINE MIR 49 108 -154 2268 82 0 0 chr1 164660115 164660420 -78003933 - AluSc SINE Alu 0 305 1 246 244 30 148 chr1 164660420 164660474 -78003879 + MIR SINE MIR 108 167 -95 43 20 0 0 chr1 164660540 164660590 -78003763 + AT_rich Low_complexity Low_complexity 1 50 0 495 270 158 0 chr1 164660631 164660783 -78003570 - MER5A DNA MER1_type -1 188 13 1046 157 12 12 chr1 164661146 164661318 -78003035 + FRAM SINE Alu 1 172 -4 197 368 0 11 chr1 164661510 164661597 -78002756 + MIR SINE MIR 16 101 -107 24 67 0 0 chr1 164661775 164661820 -78002533 + AT_rich Low_complexity Low_complexity 1 45 0 306 157 58 25 chr1 164661872 164661993 -78002360 - Zaphod DNA AcHobo -3088 943 819 2784 221 35 7 chr1 164661999 164662575 -78001778 - Zaphod DNA AcHobo -3439 592 1 22 0 0 0 chr1 164662649 164662671 -78001682 + AT_rich Low_complexity Low_complexity 1 22 0 1471 167 19 38 chr1 164663806 164664070 -78000283 - AluJo SINE Alu -28 284 26 468 296 151 0 chr1 164664602 164664761 -77999592 - MER5A DNA MER1_type 0 189 7 456 202 98 66 chr1 164664839 164665022 -77999331 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr1 164665608 164665636 -77998717 + AT_rich Low_complexity Low_complexity 1 28 0 1240 205 68 118 chr1 164667250 164667300 -77997053 + MLT1D LTR MaLR 1 52 -453 924 9 0 0 chr1 164667300 164667407 -77996946 + L1PA2 LINE L1 6049 6155 0 1240 205 68 118 chr1 164667407 164667815 -77996538 + MLT1D LTR MaLR 52 436 -69 1633 158 51 3 chr1 164668000 164668292 -77996061 - AluJb SINE Alu -2 310 5 224 122 82 41 chr1 164668384 164668433 -77995920 + L2 LINE L2 3262 3312 -1 14670 159 29 12 chr1 164668509 164669095 -77995258 - L1MA3 LINE L1 0 7724 7150 1649 139 78 0 chr1 164669095 164669353 -77995000 + AluSg SINE Alu 17 294 -16 14670 159 29 12 chr1 164669353 164671871 -77992482 - L1MA3 LINE L1 -574 7150 4482 2359 82 0 0 chr1 164671871 164672165 -77992188 - AluY SINE Alu -17 294 1 14670 159 29 12 chr1 164672165 164674281 -77990072 - L1MA3 LINE L1 -3242 4482 2404 2557 66 0 6 chr1 164674290 164674622 -77989731 - L1PA5 LINE L1 -5 6149 5820 4567 44 0 1 chr1 164674622 164675366 -77988987 + L1PA5 LINE L1 5066 5808 -346 * 13223 173 42 5 chr1 164675364 164677685 -77986668 - L1MA3 LINE L1 -5147 2418 11 1296 123 0 0 chr1 164677696 164677867 -77986486 - AluSq SINE Alu -9 304 134 2209 100 3 10 chr1 164677867 164678167 -77986186 - AluSx SINE Alu -12 300 3 363 249 116 61 chr1 164678416 164678597 -77985756 + L2 LINE L2 3108 3298 -15 1449 184 15 18 chr1 164678600 164678872 -77985481 + AluJo SINE Alu 3 273 -39 1868 171 0 7 chr1 164679057 164679361 -77984992 + AluJb SINE Alu 1 302 -10 585 273 157 15 chr1 164681136 164681411 -77982942 - L1MC4a LINE L1 -439 5723 5612 706 205 8 0 chr1 164681411 164681538 -77982815 - FLAM_C SINE Alu -5 128 1 585 273 157 15 chr1 164681538 164681559 -77982794 - L1MC4a LINE L1 -550 5612 5595 218 239 22 0 chr1 164682796 164682842 -77981511 - MIR SINE MIR 0 262 216 2074 112 6 50 chr1 164684007 164684330 -77980023 - AluSx SINE Alu -3 309 1 24 77 0 0 chr1 164684769 164684821 -77979532 + AT_rich Low_complexity Low_complexity 1 52 0 478 316 120 10 chr1 164685053 164685262 -77979091 + MIR SINE MIR 28 259 -3 474 233 17 50 chr1 164685452 164685572 -77978781 - MIR3 SINE MIR 0 208 93 884 119 0 0 chr1 164685594 164685720 -77978633 - AluSp/q SINE Alu -8 305 180 2045 74 7 0 chr1 164685720 164685989 -77978364 + THE1A-int LTR MaLR 1310 1580 0 2760 65 6 3 chr1 164685990 164686343 -77978010 + THE1A LTR MaLR 2 355 0 9172 167 53 23 chr1 164686346 164687953 -77976400 + L1MA3 LINE L1 2523 4080 -3485 2243 104 3 0 chr1 164687953 164688252 -77976101 - AluSc SINE Alu -9 300 1 9172 167 53 23 chr1 164688252 164689923 -77974430 + L1MA3 LINE L1 4080 5912 -1653 * 43014 31 21 1 chr1 164689921 164695948 -77968405 + L1HS LINE L1 1 6152 -3 509 136 0 0 chr1 164696068 164696149 -77968204 - MSTB1 LTR MaLR 0 432 352 225 0 0 0 chr1 164696149 164696174 -77968179 + (A)n Simple_repeat Simple_repeat 1 25 0 6715 139 14 16 chr1 164696174 164697836 -77966517 + L1MA3 LINE L1 5896 7560 -164 2052 138 7 3 chr1 164697836 164698133 -77966220 + AluSx SINE Alu 1 298 -14 2069 142 0 7 chr1 164698135 164698444 -77965909 + AluSx SINE Alu 1 307 -5 6715 139 14 16 chr1 164698444 164698597 -77965756 + L1MA3 LINE L1 7561 7711 -13 509 124 62 10 chr1 164698612 164698709 -77965644 + HSMAR2 DNA Mariner 1199 1300 -2 1311 44 6 28 chr1 164698797 164699024 -77965329 - L1PA3 LINE L1 0 6155 5979 3110 11 0 0 chr1 164699024 164699377 -77964976 + L1PA3 LINE L1 5627 5979 -176 2003 139 7 0 chr1 164699405 164699692 -77964661 + AluSq SINE Alu 1 289 -24 231 36 0 0 chr1 164699694 164699722 -77964631 + (CATA)n Simple_repeat Simple_repeat 2 29 0 4391 78 7 26 chr1 164699748 164700364 -77963989 - L1PA10 LINE L1 -10 6158 5555 1162 178 70 14 chr1 164701087 164701373 -77962980 - MER33 DNA MER1_type -22 302 1 776 221 0 7 chr1 164701710 164701855 -77962498 - AluJo SINE Alu -168 144 1 225 310 90 73 chr1 164702290 164702487 -77961866 + MIR SINE MIR 34 238 -24 344 316 110 0 chr1 164703556 164703711 -77960642 + L2 LINE L2 1825 1996 -1318 712 145 0 26 chr1 164703718 164703835 -77960518 - FLAM_A SINE Alu -21 121 8 203 277 60 0 chr1 164703842 164703925 -77960428 + L2 LINE L2 1983 2070 -1244 265 135 77 0 chr1 164704001 164704053 -77960300 - AluJo SINE Alu -2 298 243 878 163 0 20 chr1 164704053 164704206 -77960147 - AluJo SINE Alu -157 155 6 365 286 73 76 chr1 164704214 164704529 -77959824 + L2 LINE L2 2276 2589 -725 3716 187 47 53 chr1 164704579 164705511 -77958842 - L1MB8 LINE L1 -6 6172 5236 4378 48 2 0 chr1 164705511 164706048 -77958305 - L1PA4 LINE L1 -4 6151 5614 3716 187 47 53 chr1 164706048 164706239 -77958114 - L1MB8 LINE L1 -942 5236 5053 2147 114 7 3 chr1 164706239 164706538 -77957815 + AluSx SINE Alu 1 300 -12 3716 187 47 53 chr1 164706538 164706630 -77957723 - L1MB8 LINE L1 -1125 5053 4962 1579 183 49 3 chr1 164707832 164708117 -77956236 + AluJb SINE Alu 6 303 -9 315 263 50 20 chr1 164708799 164708898 -77955455 - MIR SINE MIR 0 262 161 194 140 0 20 chr1 164708942 164708992 -77955361 + (TA)n Simple_repeat Simple_repeat 2 50 0 495 0 0 0 chr1 164709035 164709090 -77955263 + (TG)n Simple_repeat Simple_repeat 2 56 0 1411 170 20 65 chr1 164709106 164709400 -77954953 - AluJo SINE Alu -31 281 1 207 250 0 0 chr1 164709535 164709575 -77954778 - MIR3 SINE MIR -8 200 161 6804 56 25 46 chr1 164709673 164710589 -77953764 + MER11D LTR ERVK 1 897 0 2307 81 3 0 chr1 164711071 164711375 -77952978 + AluSp SINE Alu 1 305 0 310 206 55 0 chr1 164712805 164712878 -77951475 - L1MC4 LINE L1 -196 7846 7770 203 195 24 0 chr1 164712964 164713005 -77951348 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 266 159 72 0 chr1 164713005 164713074 -77951279 - L1MCa LINE L1 -4358 2068 1995 209 275 9 37 chr1 164713078 164713187 -77951166 + (TA)n Simple_repeat Simple_repeat 1 106 0 323 347 74 26 chr1 164713212 164713402 -77950951 + MIR3 SINE MIR 10 208 0 2021 124 17 3 chr1 164713620 164713918 -77950435 + AluSg SINE Alu 1 302 -8 30 0 0 0 chr1 164714696 164714726 -77949627 + AT_rich Low_complexity Low_complexity 1 30 0 5685 93 24 11 chr1 164714726 164715605 -77948748 - L1MA2 LINE L1 0 6304 5415 1784 162 3 7 chr1 164715610 164715912 -77948441 - L1PA16 LINE L1 -1 6165 5865 725 295 81 53 chr1 164716771 164717205 -77947148 - MLT1J LTR MaLR -65 446 1 535 249 85 24 chr1 164717205 164717370 -77946983 + MIR SINE MIR 77 251 -11 213 180 0 0 chr1 164717560 164717610 -77946743 + (CA)n Simple_repeat Simple_repeat 2 51 0 475 319 98 25 chr1 164717850 164717923 -77946430 - MIR SINE MIR -34 228 162 2160 167 41 10 chr1 164717923 164718336 -77946017 + MSTB LTR MaLR 1 426 0 475 319 98 25 chr1 164718336 164718466 -77945887 - MIR SINE MIR -100 162 10 227 141 47 16 chr1 164718669 164718733 -77945620 - MIR SINE MIR -59 203 138 21 0 0 0 chr1 164718853 164718874 -77945479 + AT_rich Low_complexity Low_complexity 1 21 0 1862 175 19 8 chr1 164718881 164719247 -77945106 + L1MB4 LINE L1 5757 6126 -54 233 299 13 13 chr1 164719688 164719765 -77944588 - MIR SINE MIR -111 151 75 1109 177 48 19 chr1 164720207 164720416 -77943937 + AluJb SINE Alu 87 301 -11 637 265 38 11 chr1 164721749 164721934 -77942419 + MIR SINE MIR 57 246 -16 808 266 115 9 chr1 164722715 164722933 -77941420 - MIR SINE MIR -21 241 1 588 275 43 19 chr1 164723135 164723286 -77941067 - MER58A DNA MER1_type -2201 219 60 8483 77 14 2 chr1 164723286 164725226 -77939127 - L1PA7 LINE L1 -2 6152 4198 588 275 43 19 chr1 164725226 164725285 -77939068 - MER58A DNA MER1_type -2360 60 4 2206 136 3 3 chr1 164725401 164725739 -77938614 + L1PA16 LINE L1 5823 6160 -6 2180 104 3 3 chr1 164726150 164726447 -77937906 - AluSg SINE Alu -13 297 1 21 0 0 0 chr1 164726742 164726763 -77937590 + AT_rich Low_complexity Low_complexity 1 21 0 180 212 0 0 chr1 164728137 164728170 -77936183 + L2 LINE L2 1505 1537 -1777 2261 116 0 0 chr1 164730005 164730307 -77934046 + AluSg SINE Alu 1 302 -8 232 233 0 0 chr1 164730781 164730824 -77933529 + L2 LINE L2 3267 3309 -4 1571 175 42 7 chr1 164732296 164732582 -77931771 - AluJb SINE Alu -16 296 1 833 216 41 9 chr1 164732624 164732842 -77931511 - L1M4 LINE L1 -2403 3743 3519 * 3740 121 9 6 chr1 164732835 164733703 -77930650 + L1PA13 LINE L1 4916 5783 -380 2638 81 8 16 chr1 164733753 164734125 -77930228 + L1PA13 LINE L1 5781 6149 -14 2194 226 90 58 chr1 164734274 164735065 -77929288 - L1M4 LINE L1 -2660 3486 2662 2069 103 0 67 chr1 164735065 164735274 -77929079 - AluY SINE Alu -3 308 127 1017 142 0 0 chr1 164735274 164735443 -77928910 + (TA)n Simple_repeat Simple_repeat 1 169 0 2069 103 0 67 chr1 164735443 164735563 -77928790 - AluY SINE Alu -184 127 1 2194 226 90 58 chr1 164735563 164735662 -77928691 - L1M4 LINE L1 -3484 2662 2568 30 27 0 0 chr1 164736218 164736255 -77928098 + AT_rich Low_complexity Low_complexity 1 37 0 873 199 13 0 chr1 164736258 164736414 -77927939 - FAM SINE Alu -17 158 1 1637 210 3 3 chr1 164738664 164738964 -77925389 - AluJo SINE Alu -10 302 3 2730 29 0 0 chr1 164739244 164739552 -77924801 - AluY SINE Alu -3 308 1 231 135 58 0 chr1 164739982 164740034 -77924319 - Charlie7 DNA MER1_type -2500 112 58 182 360 23 0 chr1 164740405 164740491 -77923862 - MIR SINE MIR -6 256 169 40166 74 5 3 chr1 164740579 164744512 -77919841 + L1PA5 LINE L1 5 3960 -2194 2328 81 0 3 chr1 164744512 164744807 -77919546 - AluY SINE Alu -17 294 1 40166 74 5 3 chr1 164744807 164747003 -77917350 + L1PA5 LINE L1 3960 6149 -5 186 174 0 0 chr1 164747007 164747053 -77917300 + A-rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr1 164747128 164747153 -77917200 + AT_rich Low_complexity Low_complexity 1 25 0 185 326 23 0 chr1 164747170 164747256 -77917097 - MIR SINE MIR -63 199 112 180 362 101 0 chr1 164747234 164747303 -77917050 + MIR SINE MIR 38 113 -95 * 182 292 21 0 chr1 164747307 164747355 -77916998 - MIR SINE MIR -207 55 7 215 288 14 14 chr1 164749876 164749949 -77914404 + CT-rich Low_complexity Low_complexity 2 74 0 245 170 19 19 chr1 164750303 164750356 -77913997 - L2 LINE L2 -3 3310 3258 26 30 0 0 chr1 164750409 164750442 -77913911 + AT_rich Low_complexity Low_complexity 1 33 0 1358 183 51 82 chr1 164751327 164751496 -77912857 + MER44D DNA MER2_type 206 379 -2108 2280 113 7 0 chr1 164751496 164751806 -77912547 - AluSx SINE Alu 0 312 1 1358 183 51 82 chr1 164751806 164751992 -77912361 + MER44D DNA MER2_type 379 605 0 459 0 0 0 chr1 164752117 164752168 -77912185 + (CA)n Simple_repeat Simple_repeat 2 52 0 2593 133 13 53 chr1 164752169 164752329 -77912024 - Tigger2a DNA MER2_type -2275 433 268 2368 97 0 3 chr1 164752329 164752637 -77911716 + AluSq SINE Alu 1 307 -6 2593 133 13 53 chr1 164752637 164752927 -77911426 - Tigger2a DNA MER2_type -2440 268 1 2208 100 0 0 chr1 164753058 164753348 -77911005 - AluY SINE Alu -21 290 1 1152 270 143 53 chr1 164753605 164753794 -77910559 - HAL1 LINE L1 -387 2120 1950 2297 113 0 0 chr1 164753794 164754104 -77910249 + AluSg SINE Alu 1 310 0 1152 270 143 53 chr1 164754104 164754557 -77909796 - HAL1 LINE L1 -557 1950 1376 655 255 13 13 chr1 164754557 164754714 -77909639 - FAM SINE Alu -18 157 1 1152 270 143 53 chr1 164754714 164754941 -77909412 - HAL1 LINE L1 -1131 1376 1171 544 259 70 16 chr1 164755104 164755289 -77909064 - L1ME3 LINE L1 -163 5999 5805 240 204 163 0 chr1 164755290 164755388 -77908965 - HAL1 LINE L1 -1303 1204 1091 447 19 0 0 chr1 164755458 164755510 -77908843 + (TATG)n Simple_repeat Simple_repeat 2 53 0 13323 199 37 44 chr1 164755533 164758795 -77905558 + L1MA4A LINE L1 38 3322 -3683 2063 115 6 13 chr1 164758795 164759107 -77905246 + AluSx SINE Alu 1 310 -2 13323 199 37 44 chr1 164759107 164762091 -77902262 + L1MA4A LINE L1 3322 6310 -695 234 0 0 0 chr1 164762091 164762117 -77902236 + (CAA)n Simple_repeat Simple_repeat 2 27 0 13323 199 37 44 chr1 164762117 164762806 -77901547 + L1MA4A LINE L1 6310 7002 -3 981 276 81 55 chr1 164762831 164763265 -77901088 - HAL1 LINE L1 -1508 999 555 2585 139 18 2 chr1 164763307 164763702 -77900651 + MSTA LTR MaLR 1 401 -27 290 262 24 12 chr1 164763702 164763786 -77900567 + CT-rich Low_complexity Low_complexity 5 89 0 1089 200 43 5 chr1 164763793 164764003 -77900350 - AluJb SINE Alu -92 220 3 290 119 0 0 chr1 164764004 164764046 -77900307 + MSTA LTR MaLR 387 428 0 894 284 138 23 chr1 164764050 164764209 -77900144 - HAL1 LINE L1 -1987 520 381 2242 106 0 0 chr1 164764209 164764502 -77899851 - AluSg SINE Alu -17 293 1 894 284 138 23 chr1 164764502 164764785 -77899568 - HAL1 LINE L1 -2126 381 27 2028 122 0 0 chr1 164765294 164765580 -77898773 - AluSc SINE Alu -23 286 1 2664 89 38 8 chr1 164766673 164767065 -77897288 + MLT2A1 LTR ERVL 1 404 -40 241 98 0 0 chr1 164767080 164767121 -77897232 - LTR66 LTR ERVL -172 438 398 268 105 53 70 chr1 164767167 164767178 -77897175 + MLT2A1 LTR ERVL 389 399 -45 267 31 0 0 chr1 164767178 164767210 -77897143 + (TG)n Simple_repeat Simple_repeat 2 33 0 268 105 53 70 chr1 164767210 164767255 -77897098 + MLT2A1 LTR ERVL 399 444 0 222 295 90 13 chr1 164767611 164767689 -77896664 - MER91C DNA MER1_type -46 94 11 1339 189 126 7 chr1 164767721 164768023 -77896330 - MER2 DNA MER2_type -1 344 7 415 219 0 196 chr1 164768048 164768267 -77896086 + MER5B DNA MER1_type 3 178 0 905 81 0 0 chr1 164769323 164769483 -77894870 - AluSg/x SINE Alu 0 333 174 340 255 329 6 chr1 164769511 164769672 -77894681 + MIR SINE MIR 40 252 -10 856 156 0 7 chr1 164769782 164769923 -77894430 + AluJ SINE Alu 1 140 -172 979 129 0 14 chr1 164769992 164770132 -77894221 + AluJ SINE Alu 148 285 -27 414 0 0 0 chr1 164770134 164770180 -77894173 + (TG)n Simple_repeat Simple_repeat 2 47 0 28 0 0 0 chr1 164770439 164770467 -77893886 + AT_rich Low_complexity Low_complexity 1 28 0 517 120 160 0 chr1 164771107 164771207 -77893146 + L1MA8 LINE L1 6017 6132 -159 756 212 75 17 chr1 164771229 164771470 -77892883 + Charlie1 DNA MER1_type 2507 2761 0 207 0 0 0 chr1 164772030 164772053 -77892300 + (T)n Simple_repeat Simple_repeat 1 23 0 296 218 11 35 chr1 164772172 164772259 -77892094 - HAL1 LINE L1 -167 2340 2256 1567 167 3 57 chr1 164772667 164772984 -77891369 - AluJo SINE Alu -12 300 1 22 35 0 0 chr1 164773055 164773084 -77891269 + AT_rich Low_complexity Low_complexity 1 29 0 560 148 46 9 chr1 164774191 164774299 -77890054 + L1MA5A LINE L1 6180 6291 -6 2361 91 13 0 chr1 164774382 164774691 -77889662 + AluSp SINE Alu 1 313 0 487 259 15 52 chr1 164775906 164776041 -77888312 - L2 LINE L2 -4 3309 3180 438 338 153 23 chr1 164776116 164776672 -77887681 - L2 LINE L2 -470 2844 2217 197 339 94 31 chr1 164778319 164778446 -77885907 - L2 LINE L2 0 3313 3179 21 36 0 0 chr1 164778998 164779026 -77885327 + AT_rich Low_complexity Low_complexity 1 28 0 321 241 70 95 chr1 164779026 164779184 -77885169 - HAL1 LINE L1 -6 2501 2348 1293 145 0 10 chr1 164779259 164779459 -77884894 - AluJb SINE Alu -99 213 16 868 73 8 8 chr1 164779474 164779597 -77884756 - L1PB1 LINE L1 -5 6146 6024 605 144 0 0 chr1 164779597 164779694 -77884659 - L1MA8 LINE L1 -45 6246 6150 * 629 158 86 14 chr1 164779684 164779823 -77884530 - L1 LINE L1 -1686 4460 4312 645 202 9 0 chr1 164779903 164780017 -77884336 - MER58B DNA MER1_type -16 325 211 4480 129 30 1 chr1 164780030 164780758 -77883595 - L1MA8 LINE L1 -164 6127 5379 5472 141 26 54 chr1 164781165 164782028 -77882325 - L1M LINE L1 -749 5397 4594 1814 181 0 0 chr1 164782028 164782337 -77882016 + AluJb SINE Alu 1 309 -3 5472 141 26 54 chr1 164782337 164782609 -77881744 - L1M LINE L1 -1552 4594 4316 2156 113 7 0 chr1 164782621 164782921 -77881432 - AluY SINE Alu -9 302 1 972 222 5 5 chr1 164782990 164783184 -77881169 - MER58A DNA MER1_type -29 195 2 485 258 122 9 chr1 164783310 164783531 -77880822 - HAL1 LINE L1 -285 2222 1977 192 217 0 0 chr1 164783555 164783601 -77880752 + (TA)n Simple_repeat Simple_repeat 2 47 0 228 229 0 62 chr1 164783603 164783699 -77880654 - L1MC4 LINE L1 -1339 6703 6614 195 42 0 0 chr1 164783700 164783724 -77880629 + (TA)n Simple_repeat Simple_repeat 1 24 0 526 283 94 55 chr1 164783743 164784072 -77880281 - HAL1 LINE L1 -1559 948 607 29 28 0 0 chr1 164784203 164784239 -77880114 + AT_rich Low_complexity Low_complexity 1 36 0 1785 107 92 0 chr1 164784812 164785084 -77879269 + AluSx SINE Alu 1 297 -15 1782 114 0 0 chr1 164785921 164786158 -77878195 + AluSx SINE Alu 1 237 -75 223 307 23 57 chr1 164837402 164837421 -77826932 - MIR SINE MIR -155 107 89 1621 190 63 14 chr1 164837421 164837769 -77826584 + MLT1A1 LTR MaLR 1 365 0 223 307 23 57 chr1 164837769 164837837 -77826516 - MIR SINE MIR -173 89 23 353 317 149 24 chr1 164838273 164838481 -77825872 + MIR SINE MIR 23 256 -6 2247 111 0 7 chr1 164838495 164838793 -77825560 - AluSg SINE Alu -12 298 3 348 179 12 12 chr1 164838795 164838879 -77825474 - L1M4 LINE L1 -3191 2955 2872 198 191 0 0 chr1 164839207 164839249 -77825104 + (TA)n Simple_repeat Simple_repeat 2 43 0 227 277 79 40 chr1 164839737 164839838 -77824515 + AluYb8 SINE Alu 204 308 0 22 0 0 0 chr1 164840353 164840375 -77823978 + AT_rich Low_complexity Low_complexity 1 22 0 1840 243 65 46 chr1 164840496 164841080 -77823273 + L2 LINE L2 2174 2768 -546 407 276 89 8 chr1 164841062 164841185 -77823168 + L2 LINE L2 3179 3311 -2 * 699 210 149 28 chr1 164841647 164841861 -77822492 + MIR SINE MIR 2 241 -21 194 257 100 79 chr1 164842046 164842186 -77822167 - L3b LINE CR1 -153 1430 1288 2143 102 10 17 chr1 164842583 164842876 -77821477 - AluSc SINE Alu -18 291 1 2043 125 10 0 chr1 164843523 164843819 -77820534 + AluSx SINE Alu 1 299 -13 5845 123 18 6 chr1 164844312 164845854 -77818499 - L1PA16 LINE L1 -5 6161 4605 2166 113 3 3 chr1 164845854 164846156 -77818197 + AluSx SINE Alu 1 302 -10 3203 178 37 0 chr1 164846156 164846730 -77817623 - L1MB7 LINE L1 -63 6121 5527 2101 184 42 103 chr1 164846730 164846911 -77817442 + LTR53 LTR ERVL 1 192 -327 765 214 97 0 chr1 164846911 164847065 -77817288 - FAM SINE Alu -5 170 2 2101 184 42 103 chr1 164847065 164847436 -77816917 + LTR53 LTR ERVL 192 519 0 712 170 10 102 chr1 164847436 164847576 -77816777 - L1MB7 LINE L1 -791 5393 5403 334 71 0 0 chr1 164847576 164847618 -77816735 + 5S rRNA rRNA 1 42 -79 712 170 10 102 chr1 164847618 164847735 -77816618 - L1MB7 LINE L1 -780 5404 5278 1261 160 15 0 chr1 164847742 164847942 -77816411 - AluJo SINE Alu -24 288 86 3081 176 75 14 chr1 164847971 164848206 -77816147 - L1MB7 LINE L1 -920 5226 5007 2417 124 45 24 chr1 164848206 164848586 -77815767 + MLT1B LTR MaLR 3 390 0 3081 176 75 14 chr1 164848586 164848991 -77815362 - L1MB7 LINE L1 -1139 5007 4547 2808 117 60 34 chr1 164848991 164849587 -77814766 + MER4B LTR ERV1 1 779 0 796 235 17 17 chr1 164849587 164849817 -77814536 - L1MB7 LINE L1 -1596 4550 4321 795 81 0 0 chr1 164849818 164849917 -77814436 - AluY SINE Alu -11 300 202 679 217 23 54 chr1 164849917 164850040 -77814313 - L1MB7 LINE L1 -1814 4332 4218 2088 144 41 36 chr1 164850040 164850402 -77813951 - THE1B LTR MaLR 0 364 1 679 217 23 54 chr1 164850402 164850499 -77813854 - L1MB7 LINE L1 -1928 4218 4119 4324 144 22 10 chr1 164850502 164851195 -77813158 + MER50 LTR ERV1 5 705 -29 368 175 0 0 chr1 164851197 164851254 -77813099 - L1MB7 LINE L1 -2021 4125 4069 4209 132 30 11 chr1 164851332 164851992 -77812361 - LTR8A LTR ERV1 0 727 55 1351 94 0 0 chr1 164851992 164852173 -77812180 + AluY SINE Alu 126 306 -5 369 280 147 90 chr1 164853130 164853430 -77810923 - L2 LINE L2 -1 3271 2955 288 374 20 27 chr1 164853481 164853628 -77810725 + MIR3 SINE MIR 51 196 -12 25 31 0 0 chr1 164854106 164854138 -77810215 + AT_rich Low_complexity Low_complexity 1 32 0 242 250 0 0 chr1 164854147 164854199 -77810154 - MIR SINE MIR -8 254 203 2287 94 7 3 chr1 164854213 164854521 -77809832 + AluSg1 SINE Alu 1 309 0 1984 124 9 42 chr1 164854545 164854592 -77809761 - L1MB3 LINE L1 0 6183 6136 1899 135 37 3 chr1 164854592 164854889 -77809464 + AluSx SINE Alu 1 307 -5 1984 124 9 42 chr1 164854889 164855172 -77809181 - L1MB3 LINE L1 -47 6136 5864 448 282 13 20 chr1 164855308 164855457 -77808896 - MIR SINE MIR -109 153 6 324 0 0 0 chr1 164855460 164855496 -77808857 + (TG)n Simple_repeat Simple_repeat 2 37 0 695 258 0 0 chr1 164855558 164855690 -77808663 + FLAM_A SINE Alu 2 133 0 877 171 0 0 chr1 164856621 164856761 -77807592 + FLAM_C SINE Alu 1 140 -3 460 111 0 16 chr1 164856794 164856857 -77807496 + AluJ/FRAM SINE Alu 232 293 -19 1774 166 10 3 chr1 164856911 164857206 -77807147 + AluJo SINE Alu 1 297 -15 432 288 82 71 chr1 164857211 164857565 -77806788 - MLT1J LTR MaLR -44 467 110 21 0 0 0 chr1 164857602 164857623 -77806730 + AT_rich Low_complexity Low_complexity 1 21 0 2337 91 3 0 chr1 164857641 164857937 -77806416 - AluSp SINE Alu -16 297 1 2152 115 3 16 chr1 164858412 164858716 -77805637 + AluSq SINE Alu 1 300 -13 277 275 42 63 chr1 164859487 164859629 -77804724 - MLT1J LTR MaLR -41 470 332 972 222 58 0 chr1 164859631 164859838 -77804515 - MER20 DNA MER1_type 0 219 1 2030 256 82 40 chr1 164859890 164860817 -77803536 + L1MEc LINE L1 846 1811 -4585 2215 103 0 3 chr1 164860927 164861217 -77803136 - AluSg SINE Alu -21 289 1 215 258 30 30 chr1 164861361 164861427 -77802926 + MER91B DNA MER1_type 23 88 -102 1721 110 0 0 chr1 164862164 164862450 -77801903 + AluSq SINE Alu 58 343 0 15981 63 10 1 chr1 164862900 164865787 -77798566 - L1PA5 LINE L1 -8 6146 3241 268 150 250 0 chr1 164865955 164866035 -77798318 + MER112 DNA MER1_type 65 164 -96 2147 99 25 0 chr1 164866038 164866320 -77798033 - AluSx SINE Alu -13 299 11 216 0 0 0 chr1 164866331 164866355 -77797998 + (TATTG)n Simple_repeat Simple_repeat 2 25 0 2176 107 23 0 chr1 164867489 164867788 -77796565 - AluSp SINE Alu -7 306 1 2407 64 3 3 chr1 164868077 164868372 -77795981 - AluY SINE Alu -14 297 3 183 42 0 0 chr1 164868379 164868403 -77795950 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 224 225 0 0 chr1 164868639 164868679 -77795674 - L2 LINE L2 -19 3253 3214 * 1499 300 104 55 chr1 164868678 164869933 -77794420 - L2 LINE L2 -224 3048 1735 1723 173 0 43 chr1 164869941 164870072 -77794281 + AluJo SINE Alu 3 138 -174 1898 148 0 30 chr1 164870072 164870370 -77793983 + AluJb SINE Alu 1 289 -23 1723 173 0 43 chr1 164870370 164870562 -77793791 + AluJo SINE Alu 138 312 0 1290 227 83 75 chr1 164870722 164871052 -77793301 + L1ME2 LINE L1 3560 3886 -2260 4746 86 100 21 chr1 164871052 164871775 -77792578 - LTR17 LTR ERV1 0 780 1 1290 227 83 75 chr1 164871775 164872128 -77792225 + L1ME2 LINE L1 3886 4249 -1897 767 219 53 28 chr1 164872128 164872375 -77791978 + L1ME2 LINE L1 4498 4750 -1396 * 2788 218 73 64 chr1 164872364 164872622 -77791731 + L1ME2 LINE L1 4985 5239 -925 1971 183 6 11 chr1 164872622 164872988 -77791365 + MLT1A1 LTR MaLR 2 365 0 2788 218 73 64 chr1 164872988 164873075 -77791278 + L1ME2 LINE L1 5239 5324 -840 1569 139 44 11 chr1 164873075 164873348 -77791005 + AluJb SINE Alu 23 304 -8 2788 218 73 64 chr1 164873348 164874143 -77790210 + L1ME2 LINE L1 5324 6155 -9 2031 148 0 3 chr1 164874438 164874741 -77789612 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 164875721 164875742 -77788611 + AT_rich Low_complexity Low_complexity 1 21 0 2428 157 77 9 chr1 164876102 164876567 -77787786 - L1PB4 LINE L1 -3 6153 5657 2168 16 0 0 chr1 164876667 164876917 -77787436 + L1PA2 LINE L1 5906 6155 0 559 273 16 11 chr1 164878555 164878738 -77785615 - L1M4 LINE L1 -1927 4219 4036 186 119 30 30 chr1 164878802 164878869 -77785484 + (TTATA)n Simple_repeat Simple_repeat 3 69 0 29 0 0 0 chr1 164878869 164878898 -77785455 + AT_rich Low_complexity Low_complexity 1 29 0 182 258 48 16 chr1 164878903 164878965 -77785388 - L3 LINE CR1 -529 1048 985 197 306 20 0 chr1 164879555 164879604 -77784749 + MIR SINE MIR 32 81 -127 609 138 36 24 chr1 164880506 164880673 -77783680 + CT-rich Low_complexity Low_complexity 3 171 0 1686 194 0 0 chr1 164880674 164880952 -77783401 - AluSx SINE Alu -34 278 1 324 120 0 0 chr1 164881784 164881834 -77782519 + (TATG)n Simple_repeat Simple_repeat 4 53 0 707 261 23 9 chr1 164882844 164883059 -77781294 + L1MA9 LINE L1 6057 6274 -38 38 39 0 0 chr1 164883059 164883111 -77781242 + AT_rich Low_complexity Low_complexity 1 52 0 25176 91 12 3 chr1 164883118 164887485 -77776868 - L1PA7 LINE L1 -13 6141 1733 22077 76 143 81 chr1 164887478 164891587 -77772766 - L1P LINE L1 -1769 4377 12 * 1213 289 54 18 chr1 164891771 164892214 -77772139 - LTR16B LTR ERVL 0 464 6 215 170 38 0 chr1 164892814 164892867 -77771486 - MER5C DNA MER1_type -160 164 110 2139 241 137 12 chr1 164892933 164893947 -77770406 - L1MC4 LINE L1 -98 7710 6597 989 157 24 137 chr1 164893990 164894042 -77770311 - L1MB7 LINE L1 -12 6166 6110 2131 114 0 3 chr1 164894042 164894331 -77770022 + AluSx SINE Alu 1 288 -24 989 157 24 137 chr1 164894331 164894533 -77769820 - L1MB7 LINE L1 -68 6110 5941 * 2046 209 31 44 chr1 164894529 164895011 -77769342 - L1M4 LINE L1 -5554 988 513 4396 108 34 0 chr1 164895012 164895686 -77768667 - L1MA5A LINE L1 -25 6272 5576 1895 227 96 18 chr1 164895697 164896186 -77768167 - L1M4 LINE L1 -6014 528 2 745 232 7 12 chr1 164896200 164896387 -77767966 - L1MC4 LINE L1 -1405 6590 6438 2125 277 97 10 chr1 164897117 164897820 -77766533 + L2 LINE L2 1772 2535 -779 523 266 16 0 chr1 164898284 164898408 -77765945 + L2 LINE L2 2485 2610 -704 1019 283 157 16 chr1 164898416 164898906 -77765447 + L2 LINE L2 2741 3302 -11 27 0 0 0 chr1 164899308 164899335 -77765018 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr1 164899468 164899505 -77764848 + AT_rich Low_complexity Low_complexity 1 37 0 6317 132 36 72 chr1 164899579 164899960 -77764393 + Tigger3b DNA MER2_type 4 397 -2631 2321 113 0 0 chr1 164899960 164900271 -77764082 - AluSx SINE Alu -1 311 1 1881 96 92 4 chr1 164900274 164900561 -77763792 - AluSx SINE Alu 0 310 1 6317 132 36 72 chr1 164900561 164901433 -77762920 + Tigger3b DNA MER2_type 399 1218 -13 2840 236 11 9 chr1 164901484 164902133 -77762220 - MER82 DNA MER2_type -2 651 2 21 57 0 0 chr1 164902344 164902379 -77761974 + AT_rich Low_complexity Low_complexity 1 35 0 261 83 0 0 chr1 164902560 164902596 -77761757 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 2327 79 16 3 chr1 164902598 164902902 -77761451 - AluSp SINE Alu -5 308 1 427 246 0 112 chr1 164903049 164903183 -77761170 + MIR SINE MIR 6 124 -138 207 88 0 0 chr1 164903183 164903217 -77761136 + (CCTG)n Simple_repeat Simple_repeat 2 35 0 321 128 51 13 chr1 164903217 164903286 -77761067 + CT-rich Low_complexity Low_complexity 3 77 -6 300 111 0 0 chr1 164903286 164903331 -77761022 + (CCTCG)n Simple_repeat Simple_repeat 2 46 0 488 260 27 13 chr1 164903339 164903350 -77761003 + MIR SINE MIR 108 117 -145 1987 106 3 35 chr1 164903350 164903632 -77760721 - AluSx SINE Alu -39 273 1 488 260 27 13 chr1 164903632 164903770 -77760583 + MIR SINE MIR 117 259 -3 425 251 246 28 chr1 164905239 164905418 -77758935 + MIR SINE MIR 19 236 -26 313 288 62 156 chr1 164905416 164905819 -77758534 + L2 LINE L2 2903 3267 -5 * 10397 160 31 26 chr1 164906000 164906886 -77757467 - L1MA8 LINE L1 -165 6126 5246 2110 125 29 35 chr1 164906886 164907261 -77757092 - THE1C LTR MaLR -2 373 1 10397 160 31 26 chr1 164907261 164908119 -77756234 - L1MA8 LINE L1 -1045 5246 4394 5565 99 16 7 chr1 164908119 164908949 -77755404 - L1MA1 LINE L1 0 6302 5466 10397 160 31 26 chr1 164908949 164910136 -77754217 - L1MA8 LINE L1 -1897 4394 3182 1176 83 0 0 chr1 164910136 164910292 -77754061 - AluSg/x SINE Alu 0 312 157 1594 186 27 3 chr1 164910305 164910675 -77753678 - L1MA8 LINE L1 -2970 3176 2798 271 128 0 21 chr1 164910928 164910975 -77753378 - L1M1 LINE L1 -754 5551 5506 28 29 0 0 chr1 164911026 164911061 -77753292 + AT_rich Low_complexity Low_complexity 1 35 0 242 146 0 0 chr1 164911847 164911888 -77752465 + L1ME1 LINE L1 6121 6161 -5 180 103 0 0 chr1 164911929 164911952 -77752401 + (T)n Simple_repeat Simple_repeat 1 24 0 7626 26 0 0 chr1 164911952 164913546 -77750807 - L1PA3 LINE L1 0 6155 4564 1358 186 115 0 chr1 164914907 164915176 -77749177 + AluJb SINE Alu 1 300 -2 2696 228 106 45 chr1 164915654 164916480 -77747873 + L1ME2 LINE L1 2998 3919 -2227 4746 86 100 21 chr1 164916480 164917203 -77747150 - LTR17 LTR ERV1 0 780 1 2696 228 106 45 chr1 164917203 164917556 -77746797 + L1ME2 LINE L1 3919 4249 -1897 767 219 53 28 chr1 164917556 164917803 -77746550 + L1ME2 LINE L1 4498 4750 -1396 * 2788 218 73 64 chr1 164917792 164918050 -77746303 + L1ME2 LINE L1 4985 5239 -925 1971 183 6 11 chr1 164918050 164918416 -77745937 + MLT1A1 LTR MaLR 2 365 0 2788 218 73 64 chr1 164918416 164918503 -77745850 + L1ME2 LINE L1 5239 5324 -840 1569 139 44 11 chr1 164918503 164918776 -77745577 + AluJb SINE Alu 23 304 -8 2788 218 73 64 chr1 164918776 164919571 -77744782 + L1ME2 LINE L1 5324 6155 -9 1889 136 4 0 chr1 164919866 164920139 -77744214 + AluSq SINE Alu 1 274 -39 234 0 0 0 chr1 164920139 164920165 -77744188 + (TC)n Simple_repeat Simple_repeat 2 27 0 237 178 0 0 chr1 164920167 164920212 -77744141 + (CA)n Simple_repeat Simple_repeat 2 46 0 566 194 54 86 chr1 164920259 164920445 -77743908 + MER58C DNA MER1_type 35 214 -1 180 0 0 0 chr1 164920926 164920946 -77743407 + (T)n Simple_repeat Simple_repeat 1 20 0 335 339 65 8 chr1 164921848 164921972 -77742381 - L2 LINE L2 -5 3267 3137 311 352 95 67 chr1 164922104 164922562 -77741791 - L2 LINE L2 -189 3083 2639 1724 191 0 13 chr1 164922562 164922876 -77741477 + AluJb SINE Alu 1 310 -2 311 352 95 67 chr1 164922876 164923111 -77741242 - L2 LINE L2 -633 2639 2412 2212 75 4 4 chr1 164923111 164923419 -77740934 - AluY SINE Alu 0 308 1 288 0 0 0 chr1 164923419 164923451 -77740902 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1890 135 11 0 chr1 164923451 164923725 -77740628 - AluSx SINE Alu -32 280 4 311 352 95 67 chr1 164923725 164923879 -77740474 - L2 LINE L2 -859 2413 2216 202 275 121 74 chr1 164923968 164924117 -77740236 - L2 LINE L2 -1313 2001 1846 2205 100 3 16 chr1 164924516 164924826 -77739527 - AluSc SINE Alu -3 306 1 22 0 0 0 chr1 164924885 164924907 -77739446 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 164926095 164926126 -77738227 + AT_rich Low_complexity Low_complexity 1 31 0 584 280 56 81 chr1 164926352 164926784 -77737569 + L1ME3A LINE L1 5556 5976 -194 286 277 50 50 chr1 164926822 164926941 -77737412 + L1ME3A LINE L1 5959 6077 -93 37 0 0 0 chr1 164927033 164927070 -77737283 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr1 164927195 164927225 -77737128 + AT_rich Low_complexity Low_complexity 1 30 0 298 293 9 28 chr1 164927280 164927386 -77736967 - MLT1K LTR MaLR -75 513 410 194 317 189 43 chr1 164928042 164928206 -77736147 + MIR SINE MIR 43 230 -32 360 293 68 20 chr1 164928221 164928368 -77735985 + MIR SINE MIR 49 202 -60 26 64 0 0 chr1 164928397 164928444 -77735909 + AT_rich Low_complexity Low_complexity 1 47 0 1937 144 17 0 chr1 164928697 164928995 -77735358 - AluSx SINE Alu -9 303 1 393 265 108 36 chr1 164930650 164930816 -77733537 - MIR SINE MIR -11 251 74 268 302 94 9 chr1 164931041 164931147 -77733206 + L2 LINE L2 2681 2795 -519 1487 186 7 0 chr1 164931151 164931425 -77732928 - MER63 DNA MER1_type 0 1061 786 306 377 7 26 chr1 164931513 164931667 -77732686 - L2 LINE L2 0 3272 3122 407 199 252 44 chr1 164931802 164932008 -77732345 - MER2 DNA MER2_type 0 345 97 7838 14 5 0 chr1 164932066 164933017 -77731336 - L1PA3 LINE L1 0 6155 5204 4925 174 93 29 chr1 164933058 164934828 -77729525 - L1M1 LINE L1 -5004 2561 16 248 247 118 11 chr1 164934933 164935026 -77729327 + L2 LINE L2 3163 3265 -7 2010 117 34 10 chr1 164935188 164935486 -77728867 - AluSx SINE Alu -7 305 1 1089 275 40 27 chr1 164936302 164936676 -77727677 + L1MC4a LINE L1 5567 5945 -1863 1503 167 8 0 chr1 164936851 164937126 -77727227 - AluJb SINE Alu 0 311 35 24 0 0 0 chr1 164937963 164937987 -77726366 + AT_rich Low_complexity Low_complexity 1 24 0 2091 129 0 7 chr1 164939327 164939629 -77724724 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr1 164940609 164940630 -77723723 + AT_rich Low_complexity Low_complexity 1 21 0 4944 138 50 9 chr1 164940990 164941831 -77722522 - L1PB4 LINE L1 -3 6153 5279 1799 140 84 3 chr1 164941855 164942140 -77722213 - AluSg SINE Alu -2 308 1 1919 227 86 53 chr1 164944430 164945015 -77719338 - L1ME3A LINE L1 -4 6166 5563 384 22 0 0 chr1 164945077 164945122 -77719231 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 425 326 50 9 chr1 164945341 164945559 -77718794 + MIR SINE MIR 17 247 -15 12321 120 19 49 chr1 164946209 164946618 -77717735 + L1P3 LINE L1 1 421 -6040 253 0 54 0 chr1 164946618 164946655 -77717698 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 12321 120 19 49 chr1 164946655 164948778 -77715575 + L1P3 LINE L1 421 2544 -3917 2033 157 99 25 chr1 164948778 164949261 -77715092 - pTR5 LTR ERV1 -1177 1261 743 1758 181 18 25 chr1 164949261 164949697 -77714656 + pTR5 LTR ERV1 912 1344 -1094 4748 106 81 47 chr1 164949713 164950508 -77713845 + LTR12 LTR ERV1 5 826 0 1410 204 9 40 chr1 164950656 164950985 -77713368 - LTR1 LTR ERV1 -466 319 1 2290 169 19 19 chr1 164951221 164951647 -77712706 + MSTB LTR MaLR 1 426 0 403 273 99 19 chr1 164951703 164951864 -77712489 + L2 LINE L2 2584 2757 -557 408 313 153 20 chr1 164952105 164952354 -77711999 + L2 LINE L2 3027 3308 -5 1022 161 130 62 chr1 164953776 164954098 -77710255 + MER2 DNA MER2_type 1 344 0 944 178 0 35 chr1 164954144 164954313 -77710040 - FAM SINE Alu -12 163 1 1747 159 7 7 chr1 164954995 164955290 -77709063 + AluJo SINE Alu 1 295 -17 2324 103 3 0 chr1 164956694 164957006 -77707347 - AluSp SINE Alu 0 313 1 821 226 74 0 chr1 164957910 164958100 -77706253 + L1MB7 LINE L1 4730 4933 -1213 453 36 0 0 chr1 164958117 164958172 -77706181 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 1930 130 0 39 chr1 164958176 164958483 -77705870 - AluJb SINE Alu -17 295 1 259 220 0 0 chr1 164958486 164958536 -77705817 + L1MB7 LINE L1 4924 4973 -1173 1005 213 18 5 chr1 164958579 164958800 -77705553 + L1MB7 LINE L1 5942 6165 -19 1960 133 7 0 chr1 164959802 164960095 -77704258 - AluSc SINE Alu -14 295 1 2310 97 0 3 chr1 164960320 164960618 -77703735 - AluSq SINE Alu -16 297 1 2320 91 0 1 chr1 164960941 164961242 -77703111 - AluSq SINE Alu -13 300 4 183 356 14 0 chr1 164961731 164961804 -77702549 - L2 LINE L2 -554 2760 2687 583 291 98 25 chr1 164962469 164962795 -77701558 - L2 LINE L2 0 3313 2964 519 302 85 23 chr1 164962859 164963117 -77701236 - L2 LINE L2 -476 2838 2565 1246 75 0 0 chr1 164963694 164963855 -77700498 + L1PA3 LINE L1 5992 6152 -3 22 0 0 0 chr1 164963855 164963877 -77700476 + AT_rich Low_complexity Low_complexity 1 22 0 492 229 0 38 chr1 164964172 164964277 -77700076 - FLAM_A SINE Alu -41 101 1 496 316 19 0 chr1 164964905 164965060 -77699293 + MIR SINE MIR 67 224 -38 249 319 135 21 chr1 164965191 164965332 -77699021 - MER5A DNA MER1_type -1 188 32 1402 178 14 0 chr1 164965406 164965693 -77698660 + L1MA6 LINE L1 6009 6299 -1 1319 236 9 0 chr1 164966117 164966460 -77697893 + L1PA16 LINE L1 4266 4611 -1535 569 115 0 0 chr1 164966462 164966549 -77697804 - AluSg/x SINE Alu -9 303 217 1961 108 4 0 chr1 164966549 164966808 -77697545 - AluSx SINE Alu -52 260 1 5394 123 24 17 chr1 164966808 164968350 -77696003 + L1PA16 LINE L1 4605 6161 -5 2046 125 10 0 chr1 164968843 164969139 -77695214 - AluSx SINE Alu -13 299 1 2145 102 10 17 chr1 164969788 164970081 -77694272 + AluSc SINE Alu 1 291 -18 198 257 100 79 chr1 164970477 164970617 -77693736 + L3b LINE CR1 1288 1430 -153 710 210 149 28 chr1 164970802 164971016 -77693337 - MIR SINE MIR -21 241 2 192 319 5 99 chr1 164971256 164971447 -77692906 + L2 LINE L2 2926 3098 -174 416 276 89 8 chr1 164971478 164971601 -77692752 - L2 LINE L2 -2 3311 3179 * 1861 243 65 46 chr1 164971583 164972167 -77692186 - L2 LINE L2 -546 2768 2174 22 0 0 0 chr1 164972288 164972310 -77692043 + AT_rich Low_complexity Low_complexity 1 22 0 1974 137 3 50 chr1 164972822 164973143 -77691210 - AluJo SINE Alu -6 306 1 248 135 0 0 chr1 164973296 164973333 -77691020 - MSTB LTR MaLR -11 417 381 1273 119 0 0 chr1 164973333 164973509 -77690844 + AluSp SINE Alu 137 312 -1 2041 156 70 5 chr1 164973509 164973881 -77690472 - MSTB LTR MaLR -30 396 1 9116 176 18 7 chr1 164973881 164975514 -77688839 - MSTB-int LTR MaLR 0 1651 2 2397 166 12 9 chr1 164975514 164975935 -77688418 - MSTB LTR MaLR 0 426 5 225 337 11 33 chr1 164976366 164976458 -77687895 - MER5A DNA MER1_type -49 140 51 * 281 329 0 12 chr1 164976388 164976470 -77687883 + MER5A DNA MER1_type 81 161 -28 249 343 86 9 chr1 164976479 164976584 -77687769 - MIR SINE MIR -60 148 36 564 312 12 12 chr1 164977359 164977532 -77686821 - MER5B DNA MER1_type -5 173 1 192 353 216 9 chr1 164977532 164977644 -77686709 + MIR3 SINE MIR 12 147 -61 2417 161 26 25 chr1 164978424 164979220 -77685133 - L1M1 LINE L1 -625 5678 4887 1856 181 3 0 chr1 164979220 164979529 -77684824 - AluJo SINE Alu -2 310 1 2417 161 26 25 chr1 164979529 164979641 -77684712 - L1M1 LINE L1 -1416 4887 4777 1428 143 0 80 chr1 164979677 164979928 -77684425 + AluJb SINE Alu 74 304 -8 698 150 0 26 chr1 164979928 164980081 -77684272 + GA-rich Low_complexity Low_complexity 2 150 0 2206 129 7 0 chr1 164980104 164980406 -77683947 + AluSx SINE Alu 1 304 -8 2195 178 40 20 chr1 164980872 164981322 -77683031 - LOR1b LTR ERV1 0 461 3 453 127 0 13 chr1 164981432 164981539 -77682814 + L1PA13 LINE L1 6075 6180 0 243 0 0 0 chr1 164981958 164981985 -77682368 + (A)n Simple_repeat Simple_repeat 1 27 0 1816 189 102 15 chr1 164982397 164982857 -77681496 + L1MC4a LINE L1 7309 7808 0 247 217 148 52 chr1 164982864 164983014 -77681339 - MLT1H1 LTR MaLR -50 545 322 697 260 48 20 chr1 164983087 164983337 -77681016 - MLT1H1 LTR MaLR -298 257 1 450 269 160 17 chr1 164983381 164983556 -77680797 + MIR SINE MIR 12 211 -51 475 319 137 4 chr1 164984549 164984775 -77679578 + MIR SINE MIR 7 262 0 1910 183 3 0 chr1 164984988 164985294 -77679059 + AluJb SINE Alu 1 307 -5 21 36 0 0 chr1 164985731 164985759 -77678594 + AT_rich Low_complexity Low_complexity 1 28 0 1275 129 36 65 chr1 164986284 164986456 -77677897 - MER4D LTR ERV1 0 872 697 1787 171 7 23 chr1 164986456 164986755 -77677598 + AluJo SINE Alu 1 294 -18 2186 125 3 0 chr1 164986764 164987069 -77677284 + AluSx SINE Alu 3 308 -4 1275 129 36 65 chr1 164987069 164987164 -77677189 - MER4D LTR ERV1 -183 689 603 1264 170 4 17 chr1 164987187 164987417 -77676936 - AluJo SINE Alu -1 311 85 2893 172 52 21 chr1 164987417 164987741 -77676612 - MER4D LTR ERV1 -263 640 327 2133 59 30 11 chr1 164987741 164988012 -77676341 - AluY SINE Alu -8 303 28 2893 172 52 21 chr1 164988012 164988308 -77676045 - MER4D LTR ERV1 -576 327 1 256 397 75 11 chr1 164988396 164988663 -77675690 - L2 LINE L2 -2954 360 77 21 57 0 0 chr1 164990596 164990631 -77673722 + AT_rich Low_complexity Low_complexity 1 35 0 472 317 154 4 chr1 164990895 164991122 -77673231 + MIR SINE MIR 2 262 0 22 0 0 0 chr1 164991449 164991471 -77672882 + AT_rich Low_complexity Low_complexity 1 22 0 204 67 0 0 chr1 164992339 164992369 -77671984 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1713 151 13 50 chr1 164992373 164992671 -77671682 - AluJo SINE Alu -25 287 1 186 43 0 0 chr1 164993570 164993593 -77670760 + (TATG)n Simple_repeat Simple_repeat 2 24 0 464 282 128 46 chr1 164993756 164993951 -77670402 + MIR SINE MIR 12 222 -40 2132 110 0 3 chr1 164994028 164994319 -77670034 - AluSx SINE Alu -22 290 1 22 0 0 0 chr1 164994326 164994348 -77670005 + AT_rich Low_complexity Low_complexity 1 22 0 458 215 96 53 chr1 164995085 164995294 -77669059 - L1ME LINE L1 -336 5785 5568 193 145 32 0 chr1 164995379 164995441 -77668912 + (TA)n Simple_repeat Simple_repeat 1 64 0 1883 112 16 0 chr1 164995650 164995908 -77668445 + AluSg SINE Alu 35 296 -14 1794 86 31 21 chr1 164996295 164996585 -77667768 - L1PB3 LINE L1 -127 6027 5735 685 273 93 52 chr1 164996607 164996951 -77667402 + L2 LINE L2 2272 2629 -685 545 235 44 15 chr1 164996956 164997092 -77667261 - L2 LINE L2 -16 3297 3158 2110 151 20 86 chr1 164997095 164997182 -77667171 - MSTB LTR MaLR 0 426 335 2388 105 0 0 chr1 164997182 164997487 -77666866 + AluSx SINE Alu 1 305 -7 2110 151 20 86 chr1 164997487 164997875 -77666478 - MSTB LTR MaLR -91 335 1 216 211 19 0 chr1 164997922 164997974 -77666379 - L2 LINE L2 -712 2602 2550 4435 108 30 1 chr1 164998051 164998725 -77665628 - L1PA15 LINE L1 -1 6164 5472 362 297 29 14 chr1 164998744 164998882 -77665471 - L2 LINE L2 -2 3311 3172 1025 133 10 51 chr1 164998883 164999079 -77665274 - THE1B LTR MaLR 0 364 177 186 71 0 0 chr1 164999084 164999112 -77665241 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 943 171 77 65 chr1 164999218 164999528 -77664825 - SVA Other Other -643 743 430 1204 110 11 0 chr1 164999558 164999740 -77664613 - THE1B LTR MaLR -180 184 1 367 239 92 73 chr1 164999740 165000000 -77664353 - L2 LINE L2 -131 3182 2918 439 299 101 94 chr1 165000034 165000559 -77663794 + L2 LINE L2 2731 3262 -10 1939 152 0 0 chr1 165000695 165000985 -77663368 - AluSx SINE Alu -22 290 1 256 135 39 0 chr1 165001052 165001104 -77663249 - L1MB7 LINE L1 -17 6167 6114 1072 61 15 0 chr1 165001107 165001239 -77663114 + AluY SINE Alu 1 134 -177 2728 10 0 3 chr1 165001239 165001540 -77662813 + AluY SINE Alu 1 300 -11 24 91 0 0 chr1 165001572 165001638 -77662715 + AT_rich Low_complexity Low_complexity 1 66 0 210 216 0 0 chr1 165002815 165002852 -77661501 + C-rich Low_complexity Low_complexity 3 39 0 306 73 0 0 chr1 165002873 165002914 -77661439 + (CAG)n Simple_repeat Simple_repeat 3 43 0 297 162 0 0 chr1 165003013 165003081 -77661272 + (CA)n Simple_repeat Simple_repeat 1 68 0 2254 100 3 7 chr1 165005407 165005707 -77658646 + AluSp SINE Alu 1 299 -14 1912 112 65 4 chr1 165006874 165007151 -77657202 + AluSx SINE Alu 1 294 -18 1451 149 11 129 chr1 165007364 165007713 -77656640 - AluJb SINE Alu -4 308 1 180 274 20 0 chr1 165008252 165008303 -77656050 - L2 LINE L2 -4 3309 3258 2186 135 0 0 chr1 165008599 165008903 -77655450 - AluSx SINE Alu -8 304 1 1616 191 0 27 chr1 165009422 165009716 -77654637 + AluJo SINE Alu 4 289 -23 2170 130 0 3 chr1 165009889 165010188 -77654165 - AluSx SINE Alu -14 298 1 22 35 0 0 chr1 165010283 165010312 -77654041 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 165010344 165010365 -77653988 + AT_rich Low_complexity Low_complexity 1 21 0 1763 163 3 29 chr1 165010916 165011036 -77653317 + AluJo SINE Alu 1 123 -189 247 25 50 0 chr1 165011036 165011076 -77653277 + (CAA)n Simple_repeat Simple_repeat 1 42 0 2362 80 0 29 chr1 165011077 165011388 -77652965 - AluY SINE Alu -9 302 1 1763 163 3 29 chr1 165011388 165011572 -77652781 + AluJo SINE Alu 122 299 -13 2252 115 0 13 chr1 165011746 165012059 -77652294 - AluSq SINE Alu -4 309 1 344 228 54 33 chr1 165013278 165013370 -77650983 - L2 LINE L2 0 3313 3220 192 111 0 0 chr1 165013533 165013560 -77650793 - L2 LINE L2 -715 2599 2573 1648 136 35 31 chr1 165013926 165014212 -77650141 + AluJb SINE Alu 10 296 -16 1805 254 72 42 chr1 165015717 165016516 -77647837 - L2 LINE L2 -82 3231 2408 21 57 0 0 chr1 165016603 165016638 -77647715 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 165016990 165017011 -77647342 + AT_rich Low_complexity Low_complexity 1 21 0 35 71 0 0 chr1 165017345 165017415 -77646938 + AT_rich Low_complexity Low_complexity 1 70 0 253 163 233 0 chr1 165017713 165017799 -77646554 + MER112 DNA MER1_type 65 170 -90 1493 147 29 25 chr1 165017802 165018081 -77646272 - AluSx SINE Alu -19 293 14 185 129 32 0 chr1 165018204 165018235 -77646118 + MER5B DNA MER1_type 127 158 -20 21 0 0 0 chr1 165018277 165018298 -77646055 + AT_rich Low_complexity Low_complexity 1 21 0 2310 100 0 3 chr1 165018320 165018629 -77645724 - AluSg1 SINE Alu -1 308 1 191 263 0 35 chr1 165018806 165018863 -77645490 - L2 LINE L2 -12 3260 3206 204 304 18 0 chr1 165019072 165019128 -77645225 - MIR SINE MIR -62 146 90 192 318 63 48 chr1 165019216 165019279 -77645074 - MIR SINE MIR -111 97 34 2327 104 16 0 chr1 165019706 165020013 -77644340 + AluSx SINE Alu 1 312 0 1744 106 0 0 chr1 165020690 165020972 -77643381 + AluSq SINE Alu 58 339 0 9552 42 4 1 chr1 165021422 165023370 -77640983 - L1PA5 LINE L1 -8 6146 4200 4693 111 36 13 chr1 165023536 165024292 -77640061 + LTR17 LTR ERV1 1 773 -7 2047 119 0 7 chr1 165024549 165024844 -77639509 - AluSc SINE Alu -1 308 16 2453 71 3 0 chr1 165024859 165025167 -77639186 - AluY SINE Alu 0 311 3 2555 68 0 3 chr1 165025902 165026212 -77638141 - AluSq SINE Alu 0 313 5 22 0 0 0 chr1 165027654 165027676 -77636677 + AT_rich Low_complexity Low_complexity 1 22 0 294 327 139 68 chr1 165027730 165027973 -77636380 - L2 LINE L2 -1 3271 3047 2378 110 0 0 chr1 165027973 165028283 -77636070 + AluSx SINE Alu 1 310 -2 294 327 139 68 chr1 165028283 165028708 -77635645 - L2 LINE L2 -225 3047 2556 223 333 56 25 chr1 165029319 165029481 -77634872 + L2 LINE L2 2564 2730 -584 1724 175 0 7 chr1 165029580 165029866 -77634487 - AluSx SINE Alu -28 284 1 1622 195 0 10 chr1 165030778 165031080 -77633273 + AluSx SINE Alu 1 299 -13 2029 105 33 36 chr1 165031195 165031499 -77632854 + AluSq SINE Alu 1 303 -10 190 309 131 12 chr1 165031499 165031583 -77632770 - L2 LINE L2 -268 3045 2952 2356 102 3 0 chr1 165031763 165032067 -77632286 + AluSx SINE Alu 1 305 -7 250 296 83 19 chr1 165032968 165033076 -77631277 + MIR3 SINE MIR 60 174 -34 530 235 115 60 chr1 165033106 165033340 -77631013 + L3 LINE CR1 1061 1307 -270 608 244 5 50 chr1 165033357 165033558 -77630795 + L1MA10 LINE L1 6131 6322 -12 2362 103 6 0 chr1 165033705 165034016 -77630337 + AluSq SINE Alu 1 313 0 1967 146 3 3 chr1 165034554 165034849 -77629504 - AluSx SINE Alu -17 295 1 445 293 138 6 chr1 165035275 165035442 -77628911 - MIR SINE MIR -3 259 71 1135 216 67 94 chr1 165036017 165036423 -77627930 + MER34B LTR ERV1 1 372 -193 1571 187 13 46 chr1 165036423 165036728 -77627625 - AluJb SINE Alu -17 295 1 1135 216 67 94 chr1 165036728 165036913 -77627440 + MER34B LTR ERV1 372 560 -5 626 202 9 0 chr1 165037049 165037158 -77627195 + FLAM_A SINE Alu 13 122 -20 2280 100 0 0 chr1 165037580 165037870 -77626483 + AluSg SINE Alu 2 291 -19 276 126 39 19 chr1 165038300 165038403 -77625950 + (TG)n Simple_repeat Simple_repeat 1 105 0 320 151 54 6 chr1 165038434 165038600 -77625753 + (TG)n Simple_repeat Simple_repeat 2 175 0 1015 194 0 0 chr1 165038790 165038965 -77625388 - FAM SINE Alu 0 175 1 1941 80 14 40 chr1 165038998 165039273 -77625080 + AluY SINE Alu 33 300 -11 24 91 0 0 chr1 165039305 165039371 -77624982 + AT_rich Low_complexity Low_complexity 1 66 0 216 0 0 0 chr1 165040035 165040059 -77624294 + (A)n Simple_repeat Simple_repeat 1 24 0 333 265 0 51 chr1 165040219 165040317 -77624036 - L2 LINE L2 -24 3289 3197 289 385 19 6 chr1 165040958 165041114 -77623239 - L2 LINE L2 -2089 1225 1068 518 118 0 54 chr1 165041150 165041243 -77623110 + MER63 DNA MER1_type 39 752 -84 1901 142 3 3 chr1 165041593 165041881 -77622472 + AluSx SINE Alu 14 301 -11 2208 104 0 3 chr1 165042824 165043121 -77621232 + AluSg SINE Alu 1 296 -14 1284 164 230 0 chr1 165043387 165043661 -77620692 - MER1B DNA MER1_type 0 337 1 22 0 0 0 chr1 165044250 165044272 -77620081 + AT_rich Low_complexity Low_complexity 1 22 0 1352 152 47 7 chr1 165044421 165044698 -77619655 + L1MA4 LINE L1 6011 6298 -2 1705 142 19 92 chr1 165044707 165044851 -77619502 + AluSx SINE Alu 1 154 -158 2081 128 0 0 chr1 165044851 165045140 -77619213 + AluSx SINE Alu 1 289 -23 222 105 0 0 chr1 165045140 165045178 -77619175 + (TA)n Simple_repeat Simple_repeat 2 39 0 1705 142 19 92 chr1 165045178 165045357 -77618996 + AluSx SINE Alu 152 301 -11 22 0 0 0 chr1 165045483 165045505 -77618848 + AT_rich Low_complexity Low_complexity 1 22 0 4001 149 65 13 chr1 165046409 165046445 -77617908 - L1PA16 LINE L1 -3 6163 6130 2055 120 6 29 chr1 165046445 165046761 -77617592 + AluSx SINE Alu 1 309 -3 4001 149 65 13 chr1 165046761 165047071 -77617282 - L1PA16 LINE L1 -36 6130 5838 2063 126 34 0 chr1 165047071 165047365 -77616988 - AluSq SINE Alu -9 304 1 4001 149 65 13 chr1 165047365 165047780 -77616573 - L1PA16 LINE L1 -328 5838 5361 1036 157 0 46 chr1 165047780 165047977 -77616376 - MLT1B LTR MaLR -35 355 168 1004 189 0 17 chr1 165047980 165048155 -77616198 - FAM SINE Alu -13 172 1 1055 82 59 6 chr1 165048156 165048326 -77616027 - MLT1B LTR MaLR -211 179 1 230 336 30 30 chr1 165049056 165049190 -77615163 + L2 LINE L2 2597 2730 -584 555 278 61 27 chr1 165049324 165049524 -77614829 + MIR SINE MIR 4 211 -51 260 246 18 0 chr1 165049560 165049617 -77614736 + L2 LINE L2 2989 3046 -226 630 300 50 29 chr1 165049672 165049912 -77614441 + MIR SINE MIR 17 261 -1 515 203 182 20 chr1 165050752 165050900 -77613453 - MLT1H LTR MaLR 0 549 378 233 181 83 0 chr1 165051228 165051300 -77613053 + (TTTAA)n Simple_repeat Simple_repeat 3 80 0 2312 107 0 0 chr1 165051320 165051619 -77612734 - AluSx SINE Alu -11 301 3 24 53 0 0 chr1 165051895 165051933 -77612420 + AT_rich Low_complexity Low_complexity 1 38 0 2372 115 0 0 chr1 165052855 165053167 -77611186 + AluSx SINE Alu 1 312 0 668 272 60 0 chr1 165053749 165053933 -77610420 - MIR SINE MIR -54 208 14 1577 184 37 40 chr1 165054046 165054213 -77610140 - AluJb SINE Alu -14 298 131 546 91 0 0 chr1 165054213 165054290 -77610063 + (TG)n Simple_repeat Simple_repeat 2 78 0 1577 184 37 40 chr1 165054290 165054421 -77609932 - AluJb SINE Alu -181 131 1 563 306 79 50 chr1 165054479 165054796 -77609557 - L2 LINE L2 0 3313 2988 23 0 0 0 chr1 165054881 165054904 -77609449 + AT_rich Low_complexity Low_complexity 1 23 0 2351 84 3 0 chr1 165054989 165055287 -77609066 + AluSp SINE Alu 1 299 -14 23 0 0 0 chr1 165055443 165055466 -77608887 + GC_rich Low_complexity Low_complexity 1 23 0 616 330 245 11 chr1 165055600 165056142 -77608211 - L2 LINE L2 -343 2971 2303 573 126 0 0 chr1 165056398 165056485 -77607868 + MLT1J1 LTR MaLR 1 87 -359 713 302 54 39 chr1 165056613 165056944 -77607409 + MLT1J1 LTR MaLR 95 430 -16 2261 104 0 3 chr1 165057765 165058063 -77606290 + AluSq SINE Alu 1 297 -16 2489 33 40 3 chr1 165059488 165059788 -77604565 + AluY SINE Alu 1 311 0 252 0 0 0 chr1 165059869 165059897 -77604456 + (TG)n Simple_repeat Simple_repeat 2 29 0 1932 89 73 86 chr1 165061371 165061684 -77602669 + AluSx SINE Alu 2 310 -2 294 253 141 22 chr1 165062043 165062312 -77602041 + L1M4 LINE L1 2699 2999 -3147 2065 58 0 0 chr1 165062431 165062708 -77601645 - L1P LINE L1 -1094 5052 4776 * 7494 20 5 0 chr1 165062707 165064332 -77600021 + L1PA2 LINE L1 4527 6155 0 28 48 0 0 chr1 165064337 165064379 -77599974 + AT_rich Low_complexity Low_complexity 1 42 0 7418 20 0 0 chr1 165064617 165065473 -77598880 + L1PA3 LINE L1 5300 6155 0 374 96 96 0 chr1 165065573 165065646 -77598707 + MER2 DNA MER2_type 130 209 -136 304 377 7 26 chr1 165065872 165066026 -77598327 + L2 LINE L2 3122 3272 0 1401 186 7 0 chr1 165066114 165066388 -77597965 + MER63 DNA MER1_type 787 1062 0 270 302 94 9 chr1 165066392 165066498 -77597855 - L2 LINE L2 -519 2795 2681 384 265 108 36 chr1 165066722 165066888 -77597465 + MIR SINE MIR 74 251 -11 1804 135 3 35 chr1 165068545 165068864 -77595489 + AluY SINE Alu 3 311 0 273 256 141 22 chr1 165069222 165069491 -77594862 + L1M4 LINE L1 2699 2999 -3147 327 331 7 0 chr1 165069722 165069858 -77594495 + L1M4 LINE L1 3322 3458 -2688 378 263 106 45 chr1 165070510 165070708 -77593645 - MIR SINE MIR -30 232 23 41003 31 22 1 chr1 165071245 165077261 -77587092 - L1PA2 LINE L1 0 6155 12 1924 202 74 39 chr1 165078658 165079231 -77585122 + MLT1E2 LTR MaLR 20 503 -2 973 165 46 36 chr1 165079566 165079760 -77584593 - AluJb SINE Alu -13 299 104 2312 110 0 3 chr1 165080632 165080942 -77583411 + AluSx SINE Alu 1 309 -3 2337 88 0 16 chr1 165081550 165081858 -77582495 + AluY SINE Alu 1 303 -8 2349 101 16 0 chr1 165082831 165083138 -77581215 - AluSx SINE Alu 0 312 1 192 318 63 48 chr1 165083565 165083628 -77580725 + MIR SINE MIR 34 97 -111 204 304 18 0 chr1 165083716 165083772 -77580581 + MIR SINE MIR 90 146 -62 191 263 0 35 chr1 165083981 165084038 -77580315 + L2 LINE L2 3206 3260 -12 2366 94 0 3 chr1 165084215 165084524 -77579829 + AluSg1 SINE Alu 1 308 -1 21 0 0 0 chr1 165084546 165084567 -77579786 + AT_rich Low_complexity Low_complexity 1 21 0 185 129 32 0 chr1 165084609 165084640 -77579713 - MER5B DNA MER1_type -20 158 127 2244 105 0 0 chr1 165084745 165085041 -77579312 + AluSx SINE Alu 1 296 -16 198 301 137 0 chr1 165085528 165085601 -77578752 + MIR3 SINE MIR 115 197 -11 22 0 0 0 chr1 165086016 165086038 -77578315 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr1 165086085 165086131 -77578222 + AT_rich Low_complexity Low_complexity 1 46 0 1661 170 33 19 chr1 165086136 165086407 -77577946 - AluJb SINE Alu -26 286 12 1037 209 9 9 chr1 165086443 165086658 -77577695 + MER20 DNA MER1_type 4 218 -1 4791 73 47 12 chr1 165086982 165087300 -77577053 + L1PA12 LINE L1 5465 5770 -398 2324 84 0 7 chr1 165087300 165087597 -77576756 + AluY SINE Alu 1 295 -16 4791 73 47 12 chr1 165087597 165087958 -77576395 + L1PA12 LINE L1 5770 6168 0 207 0 0 0 chr1 165088054 165088077 -77576276 + (T)n Simple_repeat Simple_repeat 1 23 0 714 218 109 13 chr1 165088409 165088565 -77575788 + AluJb SINE Alu 125 295 -17 5049 162 39 27 chr1 165088881 165089012 -77575341 - L1MA9 LINE L1 -2 6310 6182 213 39 0 0 chr1 165089012 165089038 -77575315 + (TG)n Simple_repeat Simple_repeat 1 26 0 5049 162 39 27 chr1 165089038 165090340 -77574013 - L1MA9 LINE L1 -130 6182 4858 21 0 0 0 chr1 165090899 165090920 -77573433 + AT_rich Low_complexity Low_complexity 1 21 0 2137 124 3 0 chr1 165090996 165091294 -77573059 - AluSx SINE Alu -13 299 1 2578 47 0 0 chr1 165091492 165091788 -77572565 + AluY SINE Alu 1 296 -15 2256 110 0 0 chr1 165091800 165092091 -77572262 + AluSg SINE Alu 1 291 -19 2490 103 11 24 chr1 165092448 165092828 -77571525 - THE1C LTR MaLR 0 375 1 1790 163 3 13 chr1 165092941 165093248 -77571105 + AluJb SINE Alu 7 310 -2 1071 154 0 0 chr1 165093294 165093450 -77570903 + AluSg/x SINE Alu 133 288 -21 590 217 16 31 chr1 165093755 165093884 -77570469 + FLAM_A SINE Alu 1 127 -6 603 117 0 0 chr1 165094171 165094265 -77570088 + (GA)n Simple_repeat Simple_repeat 1 94 0 1917 158 7 3 chr1 165094730 165095021 -77569332 + AluJb SINE Alu 1 292 -20 1041 161 25 0 chr1 165095032 165095193 -77569160 + AluJb SINE Alu 123 287 -25 1793 116 0 0 chr1 165095201 165095442 -77568911 + AluSg SINE Alu 1 241 -69 189 0 0 0 chr1 165095450 165095471 -77568882 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 2196 116 3 0 chr1 165095753 165096045 -77568308 - AluSx SINE Alu -19 293 1 1724 137 46 21 chr1 165096076 165096361 -77567992 - AluSx SINE Alu -20 292 1 246 287 119 0 chr1 165096362 165096505 -77567848 + MIR SINE MIR 97 256 -6 1750 111 57 86 chr1 165097319 165097705 -77566648 + THE1C LTR MaLR 1 375 0 292 311 0 67 chr1 165097705 165097755 -77566598 - MIR SINE MIR -129 133 81 1864 179 34 11 chr1 165097755 165098112 -77566241 + MLT1A1 LTR MaLR 1 365 0 292 311 0 67 chr1 165098112 165098180 -77566173 - MIR SINE MIR -181 81 23 375 346 135 10 chr1 165098616 165098824 -77565529 + MIR SINE MIR 23 256 -6 2482 70 0 7 chr1 165098838 165099139 -77565214 - AluY SINE Alu -12 299 1 1596 132 119 4 chr1 165099251 165099532 -77564821 - AluSg1 SINE Alu 0 310 1 1274 216 108 7 chr1 165100664 165100933 -77563420 - AluJo SINE Alu -16 296 1 2361 83 0 7 chr1 165101167 165101469 -77562884 - AluSg SINE Alu -10 300 1 2242 91 10 3 chr1 165101611 165101907 -77562446 - AluSg SINE Alu -10 300 3 388 232 18 45 chr1 165102434 165102546 -77561807 - MIR3 SINE MIR -48 160 52 225 0 0 0 chr1 165102679 165102704 -77561649 + (T)n Simple_repeat Simple_repeat 1 25 0 2211 100 7 0 chr1 165106336 165106625 -77557728 - AluSp SINE Alu -22 291 1 377 207 97 79 chr1 165106788 165107026 -77557327 + L1MC5 LINE L1 7452 7699 -262 2196 109 6 16 chr1 165107026 165107201 -77557152 - AluSq SINE Alu -5 308 136 2233 114 3 0 chr1 165107201 165107498 -77556855 - AluSg SINE Alu -12 298 1 2196 109 6 16 chr1 165107498 165107633 -77556720 - AluSq SINE Alu -177 136 1 377 207 97 79 chr1 165107633 165107723 -77556630 + L1MC5 LINE L1 7699 7786 -175 275 160 40 80 chr1 165107726 165107801 -77556552 + L1MC5 LINE L1 7827 7898 -63 1668 158 100 4 chr1 165107910 165108189 -77556164 + AluSx SINE Alu 1 306 -6 23 68 0 0 chr1 165108252 165108296 -77556057 + AT_rich Low_complexity Low_complexity 1 44 0 742 161 0 44 chr1 165108450 165108587 -77555766 + FLAM_C SINE Alu 1 131 -2 211 114 0 29 chr1 165108622 165108657 -77555696 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 267 133 0 0 chr1 165108657 165108702 -77555651 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 1748 175 18 7 chr1 165108702 165108987 -77555366 - AluJo SINE Alu -24 288 1 228 304 101 0 chr1 165108991 165109060 -77555293 - L2 LINE L2 -228 3044 2969 2207 140 0 0 chr1 165109593 165109900 -77554453 - AluSx SINE Alu -5 307 1 2065 105 4 0 chr1 165109962 165110238 -77554115 - AluSp SINE Alu -13 300 24 246 215 89 59 chr1 165110542 165110677 -77553676 + MER112 DNA MER1_type 74 212 -48 2131 116 10 3 chr1 165110931 165111224 -77553129 - AluSx SINE Alu -17 295 1 468 307 108 6 chr1 165111232 165111408 -77552945 + MIR SINE MIR 28 221 -41 491 241 73 22 chr1 165113053 165113190 -77551163 + MIR SINE MIR 1 144 -118 750 133 23 8 chr1 165113190 165113318 -77551035 + LTR19A LTR ERV1 357 486 0 21 57 0 0 chr1 165113343 165113378 -77550975 + AT_rich Low_complexity Low_complexity 1 35 0 247 247 91 0 chr1 165113402 165113479 -77550874 + MIR SINE MIR 179 262 0 1437 167 9 0 chr1 165113527 165113755 -77550598 - AluJb SINE Alu -82 230 1 2517 60 0 0 chr1 165113785 165114085 -77550268 + AluY SINE Alu 3 300 -11 2036 134 7 0 chr1 165114112 165114410 -77549943 - AluSp SINE Alu -12 301 2 2069 125 34 0 chr1 165114909 165115204 -77549149 - AluSx SINE Alu -7 305 1 1496 194 114 46 chr1 165115721 165115853 -77548500 - Charlie4a DNA MER1_type -1476 485 363 2157 114 3 7 chr1 165115853 165116151 -77548202 + AluSx SINE Alu 1 297 -15 1496 194 114 46 chr1 165116151 165116457 -77547896 - Charlie4a DNA MER1_type -1598 363 17 271 159 0 0 chr1 165116644 165116688 -77547665 - AluSx SINE Alu -7 295 252 1581 96 5 10 chr1 165116688 165116896 -77547457 - AluSx SINE Alu -105 207 1 233 293 61 12 chr1 165116898 165116980 -77547373 + L2 LINE L2 3179 3264 -8 27 49 0 0 chr1 165117186 165117227 -77547126 + AT_rich Low_complexity Low_complexity 1 41 0 2225 99 0 0 chr1 165117228 165117521 -77546832 - AluSg SINE Alu -17 293 1 1196 148 0 36 chr1 165117524 165117720 -77546633 - AluJo SINE Alu -16 296 108 1434 178 14 0 chr1 165118182 165118469 -77545884 - L1MA6 LINE L1 -1 6299 6009 250 319 135 21 chr1 165118543 165118684 -77545669 + MER5A DNA MER1_type 32 188 -1 499 316 19 0 chr1 165118815 165118970 -77545383 - MIR SINE MIR -38 224 67 476 229 0 38 chr1 165119597 165119702 -77544651 + FLAM_A SINE Alu 1 101 -41 22 0 0 0 chr1 165119997 165120019 -77544334 + AT_rich Low_complexity Low_complexity 1 22 0 1241 106 0 0 chr1 165120019 165120189 -77544164 - L1PA3 LINE L1 -3 6152 5983 507 302 85 23 chr1 165120756 165121014 -77543339 + L2 LINE L2 2565 2838 -476 598 291 98 25 chr1 165121078 165121404 -77542949 + L2 LINE L2 2964 3313 0 183 356 14 0 chr1 165122069 165122142 -77542211 + L2 LINE L2 2687 2760 -554 2320 94 0 3 chr1 165122634 165122932 -77541421 + AluSq SINE Alu 4 300 -13 2310 97 0 3 chr1 165123255 165123553 -77540800 + AluSq SINE Alu 1 297 -16 2123 116 10 0 chr1 165123778 165124081 -77540272 + AluY SINE Alu 1 306 -5 360 280 147 90 chr1 165125038 165125338 -77539015 - L2 LINE L2 -1 3271 2955 313 374 20 27 chr1 165125389 165125536 -77538817 + MIR3 SINE MIR 51 196 -12 25 31 0 0 chr1 165126014 165126046 -77538307 + AT_rich Low_complexity Low_complexity 1 32 0 260 231 0 0 chr1 165126055 165126107 -77538246 - MIR SINE MIR -8 254 203 2208 95 13 0 chr1 165126121 165126426 -77537927 + AluSg1 SINE Alu 1 309 0 2110 99 38 0 chr1 165126497 165126790 -77537563 + AluSx SINE Alu 1 304 -8 1379 148 8 61 chr1 165126894 165127157 -77537196 + THE1B LTR MaLR 116 364 0 23 68 0 0 chr1 165127272 165127316 -77537037 + AT_rich Low_complexity Low_complexity 1 44 0 790 169 71 54 chr1 165127690 165127874 -77536479 + L1MC/D LINE L1 5625 5811 -1974 * 871 29 0 0 chr1 165127867 165127971 -77536382 - L1P LINE L1 -1038 5108 5005 417 279 48 57 chr1 165128071 165128197 -77536156 - L1ME LINE L1 -2389 3691 3566 1760 166 22 32 chr1 165128197 165128510 -77535843 + AluJo SINE Alu 1 310 -2 417 279 48 57 chr1 165128510 165128612 -77535741 - L1ME LINE L1 -2514 3566 3465 1457 271 103 28 chr1 165128637 165129992 -77534361 - L1ME LINE L1 -4249 1831 384 418 149 54 0 chr1 165129992 165130066 -77534287 - MIR SINE MIR -33 229 152 544 216 52 9 chr1 165130178 165130294 -77534059 + MIR SINE MIR 6 126 -136 596 302 126 8 chr1 165130427 165130785 -77533568 - L1ME3 LINE L1 -274 5888 5489 21 0 0 0 chr1 165130813 165130834 -77533519 + AT_rich Low_complexity Low_complexity 1 21 0 335 314 74 53 chr1 165131888 165132226 -77532127 - L1ME4a LINE L1 -67 6054 5710 1571 137 43 36 chr1 165132233 165132510 -77531843 + AluJo SINE Alu 17 295 -17 264 213 92 18 chr1 165132785 165132897 -77531456 + L1ME LINE L1 5325 5444 -720 301 217 109 22 chr1 165132904 165132996 -77531357 + L1ME LINE L1 5532 5631 -490 22 35 0 0 chr1 165133169 165133198 -77531155 + AT_rich Low_complexity Low_complexity 1 29 0 212 278 160 46 chr1 165133669 165133950 -77530403 - L2 LINE L2 -1685 1629 1317 218 283 22 100 chr1 165133976 165134156 -77530197 - L2 LINE L2 -2288 1026 861 254 195 81 23 chr1 165134290 165134377 -77529976 - L1ME4a LINE L1 -63 6058 5967 398 328 37 0 chr1 165134417 165134551 -77529802 + MIR SINE MIR 96 234 -28 1153 218 89 0 chr1 165135784 165136055 -77528298 + MER58B DNA MER1_type 45 339 -2 22 0 0 0 chr1 165136579 165136601 -77527752 + AT_rich Low_complexity Low_complexity 1 22 0 539 274 0 0 chr1 165136604 165136721 -77527632 - L2 LINE L2 0 3313 3197 1914 156 58 0 chr1 165136786 165137145 -77527208 + L1MA8 LINE L1 5907 6286 -5 465 317 72 4 chr1 165137280 165137542 -77526811 + L1ME4a LINE L1 5512 5791 -330 304 241 52 105 chr1 165137552 165137743 -77526610 + L1ME4a LINE L1 5773 5953 -168 287 150 100 12 chr1 165137744 165137824 -77526529 + L1ME4a LINE L1 6031 6117 -4 1587 195 11 51 chr1 165138094 165138448 -77525905 + MLT1A1 LTR MaLR 25 364 -1 2228 120 0 3 chr1 165138950 165139251 -77525102 - AluSx SINE Alu -11 301 2 1758 142 43 3 chr1 165140558 165140840 -77523513 + AluSg SINE Alu 1 293 -17 331 229 128 28 chr1 165141498 165141607 -77522746 + HAL1b LINE L1 331 450 -898 945 298 134 12 chr1 165141754 165142270 -77522083 + L1ME1 LINE L1 79 657 -5739 1588 184 56 72 chr1 165142275 165142382 -77521971 - MLT1A2 LTR MaLR -1 373 266 1940 143 75 0 chr1 165142382 165142717 -77521636 + MER46B DNA MER2_type 2 236 0 1588 184 56 72 chr1 165142717 165142985 -77521368 - MLT1A2 LTR MaLR -108 266 4 356 243 262 10 chr1 165142988 165143190 -77521163 + L1ME1 LINE L1 656 908 -5488 4465 184 49 21 chr1 165143303 165145083 -77519270 + L1MC1 LINE L1 1311 6844 -205 5603 176 10 6 chr1 165145103 165148420 -77515933 + L1PB1 LINE L1 2799 6307 -546 2044 122 3 3 chr1 165148420 165148706 -77515647 + AluSx SINE Alu 1 286 -26 5603 176 10 6 chr1 165148706 165149256 -77515097 + L1PB1 LINE L1 6307 6853 0 1815 198 137 31 chr1 165149279 165149950 -77514403 + L1ME1 LINE L1 2543 3284 -2931 2726 111 78 5 chr1 165149953 165150375 -77513978 - Tigger3b DNA MER2_type 0 1231 779 1418 144 81 21 chr1 165150373 165150658 -77513695 - Tigger3b DNA MER2_type -767 464 163 * 3491 218 75 46 chr1 165150786 165151944 -77512409 + L1ME1 LINE L1 3604 4804 -1411 1929 148 51 6 chr1 165151944 165152276 -77512077 + MER7A DNA MER2_type 1 345 -1 3491 218 75 46 chr1 165152276 165152392 -77511961 + L1ME1 LINE L1 4804 4915 -1300 970 239 94 22 chr1 165152419 165152603 -77511750 + L1ME1 LINE L1 4988 5157 -1058 2292 110 7 0 chr1 165152603 165152913 -77511440 + AluSx SINE Alu 1 312 0 970 239 94 22 chr1 165152913 165153130 -77511223 + L1ME1 LINE L1 5157 5418 -797 3125 208 66 9 chr1 165153251 165154038 -77510315 + L1ME1 LINE L1 5388 6219 -16 186 311 44 22 chr1 165154238 165154328 -77510025 - L2 LINE L2 -993 2321 2230 22 0 0 0 chr1 165155168 165155190 -77509163 + AT_rich Low_complexity Low_complexity 1 22 0 346 341 39 38 chr1 165155835 165156046 -77508307 + MIR3 SINE MIR 3 213 -49 623 275 80 15 chr1 165156237 165156437 -77507916 - MIR SINE MIR 0 262 50 207 244 11 67 chr1 165158751 165158841 -77505512 - MER5A DNA MER1_type -19 170 86 22868 82 5 23 chr1 165162387 165166626 -77497727 - L1P LINE L1 -1974 4172 2 872 138 7 43 chr1 165166657 165166795 -77497558 - FLAM_C SINE Alu 0 133 1 295 238 112 44 chr1 165166868 165167263 -77497090 - L1MCc LINE L1 -4889 1534 1183 1335 164 18 1 chr1 165167713 165168013 -77496340 - MER2 DNA MER2_type -2 343 1 184 254 0 45 chr1 165168752 165168819 -77495534 - L2 LINE L2 -6 3266 3203 3620 176 26 60 chr1 165169175 165169422 -77494931 - L1MB7 LINE L1 -13 6171 5917 2332 104 0 0 chr1 165169422 165169719 -77494634 - AluSq SINE Alu -16 297 1 3620 176 26 60 chr1 165169719 165170327 -77494026 - L1MB7 LINE L1 -267 5917 5345 4948 218 73 9 chr1 165170346 165171615 -77492738 - L1MB7 LINE L1 -1024 5122 3772 849 180 31 123 chr1 165171727 165171955 -77492398 - AluJo SINE Alu -104 208 2 234 317 171 44 chr1 165172653 165173046 -77491307 + L2 LINE L2 1699 2165 -1149 2452 80 0 0 chr1 165173046 165173347 -77491006 - AluSq SINE Alu -12 301 1 234 317 171 44 chr1 165173347 165173432 -77490921 + L2 LINE L2 2165 2238 -1076 628 261 90 5 chr1 165173439 165173650 -77490703 - L2 LINE L2 -1 3312 3084 884 161 54 30 chr1 165173701 165173869 -77490484 + MER5A DNA MER1_type 4 175 -14 244 111 37 19 chr1 165174284 165174338 -77490015 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 888 118 0 8 chr1 165174341 165174460 -77489893 - FLAM_C SINE Alu -15 118 1 2212 110 0 3 chr1 165174494 165174793 -77489560 - AluY SINE Alu -13 298 1 23 0 0 0 chr1 165175087 165175110 -77489243 + AT_rich Low_complexity Low_complexity 1 23 0 215 232 54 0 chr1 165175301 165175357 -77488996 + CT-rich Low_complexity Low_complexity 2 60 0 2334 79 3 3 chr1 165175567 165175859 -77488494 - AluSg1 SINE Alu -17 292 1 343 360 51 37 chr1 165176047 165176261 -77488092 + L2 LINE L2 2260 2476 -838 376 304 31 77 chr1 165176283 165176349 -77488004 + L2 LINE L2 2600 2667 -647 2500 75 0 22 chr1 165176349 165176667 -77487686 - AluY SINE Alu 0 311 1 376 304 31 77 chr1 165176667 165176860 -77487493 + L2 LINE L2 2667 2847 -467 427 317 113 60 chr1 165176893 165177049 -77487304 + L2 LINE L2 2933 3079 -193 1094 152 25 114 chr1 165177049 165177286 -77487067 + MER20 DNA MER1_type 1 216 -3 427 317 113 60 chr1 165177286 165177448 -77486905 + L2 LINE L2 3079 3268 -4 189 283 71 88 chr1 165177588 165177828 -77486525 + L2 LINE L2 2416 2651 -663 27 0 0 0 chr1 165179186 165179213 -77485140 + AT_rich Low_complexity Low_complexity 1 27 0 180 111 0 0 chr1 165179839 165179866 -77484487 + (T)n Simple_repeat Simple_repeat 1 27 0 430 183 25 100 chr1 165179872 165179992 -77484361 - U5 snRNA snRNA -2 114 4 21 0 0 0 chr1 165180229 165180250 -77484103 + GC_rich Low_complexity Low_complexity 1 21 0 439 236 217 6 chr1 165181165 165181326 -77483027 + MIR SINE MIR 36 230 -32 467 272 206 11 chr1 165181640 165181824 -77482529 - MIR SINE MIR -6 256 37 289 254 103 0 chr1 165182586 165182712 -77481641 + MER103 DNA DNA 26 164 -2 1711 180 20 0 chr1 165182954 165183254 -77481099 + AluJo SINE Alu 1 306 -6 501 151 0 0 chr1 165183264 165183350 -77481003 + GA-rich Low_complexity Low_complexity 3 88 0 376 216 128 10 chr1 165183516 165183618 -77480735 - L2 LINE L2 -7 3306 3193 7911 160 26 25 chr1 165183888 165185348 -77479005 + L1P LINE L1 13 1473 -4673 1673 186 24 3 chr1 165185522 165185812 -77478541 - AluJb SINE Alu -16 296 1 592 333 55 26 chr1 165185830 165186651 -77477702 + L1M4 LINE L1 3531 4375 -1771 677 128 0 0 chr1 165186736 165186822 -77477531 - FRAM/FAM SINE Alu -92 84 1 441 134 34 25 chr1 165187192 165187311 -77477042 + CT-rich Low_complexity Low_complexity 2 121 0 741 139 0 48 chr1 165187313 165187566 -77476787 + (TTTC)n Simple_repeat Simple_repeat 1 240 0 16080 47 4 0 chr1 165187569 165190220 -77474133 - L1PA5 LINE L1 0 6154 3507 2379 59 0 7 chr1 165190496 165190786 -77473567 + L1PA4 LINE L1 5865 6152 -3 28 0 0 0 chr1 165190786 165190814 -77473539 + AT_rich Low_complexity Low_complexity 1 28 0 1628 265 65 47 chr1 165191137 165191233 -77473120 - L1ME LINE L1 -384 5786 5693 2354 84 3 0 chr1 165191233 165191529 -77472824 - AluSp SINE Alu -16 297 1 1628 265 65 47 chr1 165191529 165191753 -77472600 - L1ME LINE L1 -477 5693 5474 2181 127 3 0 chr1 165191753 165192060 -77472293 - AluSx SINE Alu -4 308 1 1628 265 65 47 chr1 165192060 165192603 -77471750 - L1ME LINE L1 -696 5474 4885 1997 115 7 4 chr1 165192603 165192913 -77471440 - AluY SINE Alu 0 311 1 1628 265 65 47 chr1 165192913 165193213 -77471140 - L1ME LINE L1 -1285 4885 4592 972 214 15 5 chr1 165193223 165193371 -77470982 + MER3 DNA MER1_type 2 154 -55 2032 141 3 0 chr1 165193371 165193668 -77470685 + AluSx SINE Alu 1 298 -14 972 214 15 5 chr1 165193668 165193720 -77470633 + MER3 DNA MER1_type 154 204 -5 449 191 131 55 chr1 165193738 165193937 -77470416 - L1ME LINE L1 -1579 4567 4354 405 0 0 0 chr1 165193960 165194005 -77470348 + (CA)n Simple_repeat Simple_repeat 2 46 0 573 264 155 25 chr1 165194121 165194398 -77469955 - L1ME LINE L1 -2323 3823 3511 6633 181 49 17 chr1 165194500 165196572 -77467781 - L1PA16 LINE L1 -245 5933 3897 3070 227 85 13 chr1 165196579 165197513 -77466840 + L1ME1 LINE L1 2387 3387 -2759 2810 238 27 53 chr1 165197637 165197844 -77466509 + L1ME1 LINE L1 5285 5496 -670 2210 110 0 0 chr1 165197844 165198134 -77466219 + AluSx SINE Alu 1 290 -22 2810 238 27 53 chr1 165198134 165198240 -77466113 + L1ME1 LINE L1 5496 5603 -563 1731 133 8 0 chr1 165198240 165198504 -77465849 - L1MA4 LINE L1 -11 6289 6024 2810 238 27 53 chr1 165198504 165199089 -77465264 + L1ME1 LINE L1 5603 6160 -6 1920 159 0 3 chr1 165199721 165200010 -77464343 + AluSx SINE Alu 1 288 -24 507 120 0 27 chr1 165200777 165200852 -77463501 - AluJ/FRAM SINE Alu -23 289 217 301 56 0 0 chr1 165200955 165200991 -77463362 - Alu SINE Alu -255 47 12 2632 207 46 23 chr1 165201049 165201619 -77462734 + MER119 DNA MER1_type 1 583 0 296 355 140 22 chr1 165201752 165201980 -77462373 + L2 LINE L2 3018 3272 0 2524 62 3 0 chr1 165202002 165202309 -77462044 + AluY SINE Alu 1 308 -3 26 0 0 0 chr1 165202747 165202773 -77461580 + AT_rich Low_complexity Low_complexity 1 26 0 438 239 117 19 chr1 165202806 165203011 -77461342 + Charlie7 DNA MER1_type 1498 1722 -890 2237 105 0 0 chr1 165203014 165203473 -77460880 + AluSg SINE Alu 2 460 0 918 137 0 0 chr1 165203480 165203604 -77460749 + AluJb SINE Alu 1 124 -188 1237 213 78 35 chr1 165203625 165204024 -77460329 + Charlie7 DNA MER1_type 1713 2128 -484 1773 176 10 3 chr1 165204024 165204330 -77460023 - AluJo SINE Alu -4 308 1 329 271 237 21 chr1 165204581 165204906 -77459447 + Charlie7 DNA MER1_type 2218 2612 0 10893 208 32 28 chr1 165205005 165206057 -77458296 - L1PA13 LINE L1 -3784 3013 1967 2445 89 0 3 chr1 165206057 165206361 -77457992 - AluSq SINE Alu -8 305 3 10893 208 32 28 chr1 165206361 165208201 -77456152 - L1PA13 LINE L1 -4830 1967 100 2163 122 20 0 chr1 165209111 165209414 -77454939 - AluSq SINE Alu -4 309 1 12849 76 8 5 chr1 165210901 165212495 -77451858 - L1P LINE L1 -3034 3112 1512 3788 113 2 6 chr1 165212495 165213008 -77451345 - MER9 LTR ERVK 0 511 1 12849 76 8 5 chr1 165213008 165213128 -77451225 - L1P LINE L1 -4634 1512 1394 2596 103 12 26 chr1 165213230 165213637 -77450716 + L1PB1 LINE L1 5385 5787 -364 282 56 0 0 chr1 165213637 165213673 -77450680 + (CA)n Simple_repeat Simple_repeat 2 37 0 2596 103 12 26 chr1 165213673 165213691 -77450662 + L1PB1 LINE L1 5787 5804 -347 254 221 21 32 chr1 165213691 165213786 -77450567 + (TA)n Simple_repeat Simple_repeat 1 94 0 458 207 0 0 chr1 165213801 165213883 -77450470 + L1PB1 LINE L1 5782 5863 -288 1084 92 0 0 chr1 165213886 165214027 -77450326 - AluSg/x SINE Alu -15 297 157 1027 103 0 0 chr1 165214027 165214172 -77450181 + L1PB1 LINE L1 5861 6005 -146 3611 50 9 0 chr1 165214172 165214593 -77449760 + L1PA6 LINE L1 5729 6153 -1 383 329 27 34 chr1 165214701 165214847 -77449506 - MIR SINE MIR -94 168 24 1907 164 0 10 chr1 165214871 165215176 -77449177 - AluJo SINE Alu -10 302 1 324 273 108 36 chr1 165215526 165215720 -77448633 + L2 LINE L2 2906 3113 -159 1155 253 35 23 chr1 165215913 165216257 -77448096 - LTR16B LTR ERVL -13 451 104 201 289 0 0 chr1 165216318 165216363 -77447990 + C-rich Low_complexity Low_complexity 3 47 0 3022 209 31 13 chr1 165216366 165217109 -77447244 - L1 LINE L1 -3175 2971 2215 2274 101 0 3 chr1 165217919 165218215 -77446138 + AluSq SINE Alu 1 295 -18 180 333 250 0 chr1 165219163 165219259 -77445094 - L2 LINE L2 -8 3264 3145 338 196 0 103 chr1 165220028 165220125 -77444228 - MER94 DNA DNA -6 128 42 245 143 119 0 chr1 165221996 165222038 -77442315 - Tigger5 DNA MER2_type -2275 48 2 314 293 164 0 chr1 165222048 165222164 -77442189 + L2 LINE L2 3138 3272 0 2521 165 48 34 chr1 165222741 165223239 -77441114 - MLT1D LTR MaLR 0 505 1 2005 136 0 3 chr1 165223766 165224053 -77440300 + AluSx SINE Alu 1 286 -26 2883 172 24 4 chr1 165224159 165224666 -77439687 - L1MB7 LINE L1 -99 6085 5569 198 260 40 0 chr1 165226278 165226328 -77438025 + L2 LINE L2 3213 3264 -8 735 279 124 0 chr1 165229368 165229601 -77434752 + MIR SINE MIR 1 262 0 250 330 127 0 chr1 165232947 165233065 -77431288 + MIR SINE MIR 63 195 -67 2237 115 3 3 chr1 165233144 165233456 -77430897 - AluSx SINE Alu 0 312 1 319 231 11 33 chr1 165235764 165235855 -77428498 - L1ME4a LINE L1 -69 6052 5964 596 244 68 5 chr1 165235875 165236096 -77428257 - L1ME4a LINE L1 -229 5892 5658 23 0 0 0 chr1 165236345 165236368 -77427985 + AT_rich Low_complexity Low_complexity 1 23 0 32933 121 33 34 chr1 165236386 165241691 -77422662 + L1P LINE L1 12 5310 -836 3213 50 5 0 chr1 165241793 165242171 -77422182 + L1PA6 LINE L1 5775 6154 0 297 174 0 0 chr1 165242471 165242540 -77421813 + CT-rich Low_complexity Low_complexity 2 70 0 1794 166 7 10 chr1 165244460 165244793 -77419560 - AluJo SINE Alu 0 332 1 2649 150 124 100 chr1 165245860 165246538 -77417815 + LTR8A LTR ERV1 34 727 0 2187 105 0 7 chr1 165247066 165247360 -77416993 + AluSg SINE Alu 1 292 -18 2265 187 117 31 chr1 165247506 165248052 -77416301 + LTR49 LTR ERV1 3 595 0 1520 142 0 0 chr1 165248503 165248721 -77415632 + AluSq SINE Alu 1 218 -95 180 0 0 0 chr1 165248733 165248753 -77415600 + (A)n Simple_repeat Simple_repeat 1 20 0 183 184 0 0 chr1 165249532 165249570 -77414783 + (TAG)n Simple_repeat Simple_repeat 3 40 0 1030 246 169 69 chr1 165249572 165249889 -77414464 - MER41C LTR ERV1 0 554 167 4269 103 20 0 chr1 165249889 165250432 -77413921 + MER41A LTR ERV1 1 554 0 1030 246 169 69 chr1 165250432 165250618 -77413735 - MER41C LTR ERV1 -387 167 1 738 234 101 5 chr1 165250897 165251115 -77413238 + MIR SINE MIR 23 261 -1 1772 164 21 11 chr1 165251602 165251883 -77412470 + AluJo SINE Alu 3 286 -26 276 30 0 0 chr1 165251883 165251916 -77412437 + (TATG)n Simple_repeat Simple_repeat 3 35 0 339 317 127 73 chr1 165252111 165252411 -77411942 - L2 LINE L2 -2 3270 2955 666 318 159 29 chr1 165252454 165253077 -77411276 - L2 LINE L2 -454 2860 2157 4505 69 37 2 chr1 165253113 165253679 -77410674 + L1PB1 LINE L1 5566 6151 0 1610 156 87 29 chr1 165253679 165254025 -77410328 + L1MB7 LINE L1 5819 6184 0 596 110 0 0 chr1 165254025 165254116 -77410237 + L1MA8 LINE L1 6199 6289 -2 797 263 102 45 chr1 165254260 165255004 -77409349 + L1MEd LINE L1 852 1668 -4642 765 304 4 4 chr1 165255059 165255312 -77409041 + L1M4 LINE L1 4024 4276 -1870 1460 199 15 0 chr1 165255394 165255665 -77408688 + AluJo SINE Alu 11 285 -27 210 91 0 0 chr1 165255665 165255698 -77408655 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 193 73 24 24 chr1 165255712 165255753 -77408600 + (TA)n Simple_repeat Simple_repeat 1 41 0 524 274 102 89 chr1 165255757 165256066 -77408287 + L1M4 LINE L1 4311 4614 -1532 867 142 24 0 chr1 165256066 165256193 -77408160 + FLAM_A SINE Alu 1 130 -3 524 274 102 89 chr1 165256193 165256291 -77408062 + L1M4 LINE L1 4614 4709 -1437 6764 160 18 2 chr1 165256291 165258253 -77406100 + L1PA13 LINE L1 4187 6163 0 524 274 102 89 chr1 165258253 165258363 -77405990 + L1M4 LINE L1 4709 4836 -1310 352 200 0 0 chr1 165258511 165258566 -77405787 - L1PA13 LINE L1 -6732 55 1 299 154 19 0 chr1 165258888 165258940 -77405413 - L2 LINE L2 -4 3268 3216 3345 246 61 76 chr1 165259682 165260687 -77403666 + L1M4b LINE L1 11 1029 -5826 7123 33 0 1 chr1 165260687 165261476 -77402877 + L1PA5 LINE L1 5362 6149 -5 3345 246 61 76 chr1 165261476 165261930 -77402423 + L1M4b LINE L1 1029 1488 -5367 2410 121 30 30 chr1 165261930 165262294 -77402059 + THE1B LTR MaLR 1 364 0 11723 104 16 16 chr1 165262294 165262662 -77401691 + THE1B-int LTR MaLR 1 368 -1212 2203 103 0 0 chr1 165262662 165262969 -77401384 - AluY SINE Alu 0 307 1 2311 106 7 0 chr1 165262969 165263270 -77401083 - AluSp SINE Alu -10 303 1 11723 104 16 16 chr1 165263270 165263336 -77401017 + THE1B-int LTR MaLR 367 432 -1148 2026 142 3 10 chr1 165263336 165263647 -77400706 - AluSx SINE Alu -3 309 1 11723 104 16 16 chr1 165263647 165264789 -77399564 + THE1B-int LTR MaLR 431 1580 0 2241 141 33 43 chr1 165264789 165265157 -77399196 + THE1B LTR MaLR 1 364 0 3345 246 61 76 chr1 165265157 165265478 -77398875 + L1M4b LINE L1 1485 1816 -5039 416 281 68 0 chr1 165365536 165365682 -77298671 + MIR SINE MIR 97 252 -10 255 194 41 0 chr1 165366119 165366189 -77298164 - MIR SINE MIR -69 139 65 1898 165 0 7 chr1 165368012 165368315 -77296038 + AluJo SINE Alu 3 303 -9 2219 113 0 7 chr1 165368320 165368613 -77295740 + AluSx SINE Alu 1 291 -21 217 313 16 0 chr1 165368717 165368781 -77295572 - MIR3 SINE MIR -15 193 129 620 213 37 18 chr1 165369222 165369386 -77294967 - MIR SINE MIR 0 262 96 336 266 195 13 chr1 165369630 165369784 -77294569 + Charlie8 DNA MER1_type 99 280 -2137 214 273 0 0 chr1 165370561 165370616 -77293737 - MIR SINE MIR -51 211 157 185 302 0 0 chr1 165371758 165371811 -77292542 - MIR SINE MIR -81 127 75 198 283 61 61 chr1 165371947 165372145 -77292208 + L3 LINE CR1 649 846 -731 728 215 124 34 chr1 165373484 165373693 -77290660 + MIR SINE MIR 10 237 -25 689 286 5 10 chr1 165374016 165374212 -77290141 + MER91A DNA MER1_type 2 196 0 201 319 88 21 chr1 165374860 165375046 -77289307 + MIR SINE MIR 10 205 -57 202 269 0 0 chr1 165375081 165375133 -77289220 - L2 LINE L2 -8 3264 3213 235 267 69 20 chr1 165375146 165375247 -77289106 + MIR3 SINE MIR 98 203 -5 261 0 0 0 chr1 165375641 165375670 -77288683 + (A)n Simple_repeat Simple_repeat 1 29 0 673 233 111 12 chr1 165375726 165375898 -77288455 - MER5A DNA MER1_type 0 189 1 192 271 43 29 chr1 165376570 165376640 -77287713 - MIR SINE MIR -102 106 36 545 278 82 16 chr1 165378610 165378804 -77285549 + MIR SINE MIR 20 226 -36 453 253 40 40 chr1 165378847 165379021 -77285332 - L2 LINE L2 0 3313 3140 288 274 39 20 chr1 165379921 165380023 -77284330 + MIR3 SINE MIR 67 170 -38 529 298 127 37 chr1 165380094 165380503 -77283850 + LTR16A1 LTR ERVL 12 457 0 378 348 26 35 chr1 165381160 165381387 -77282966 + MIR SINE MIR 34 258 -4 428 293 87 41 chr1 165381761 165382351 -77282002 + L1ME3A LINE L1 4929 5551 -619 313 321 63 54 chr1 165382384 165382717 -77281636 + L1ME3A LINE L1 5621 5956 -214 2634 197 60 13 chr1 165383633 165384237 -77280116 + MER92B LTR ERV1 5 636 0 1820 163 0 10 chr1 165384777 165385071 -77279282 - AluJo SINE Alu -21 291 1 199 374 99 8 chr1 165385143 165385274 -77279079 - L2 LINE L2 -1 3271 3129 274 287 148 0 chr1 165386287 165386395 -77277958 - L2 LINE L2 -2 3270 3147 197 286 0 0 chr1 165386415 165386471 -77277882 + L2 LINE L2 3217 3272 0 471 183 0 12 chr1 165386787 165386869 -77277484 - MER63 DNA MER1_type -299 763 683 565 268 43 18 chr1 165387357 165387521 -77276832 + MIR SINE MIR 21 188 -74 276 192 39 0 chr1 165387862 165387914 -77276439 - LTR39 LTR ERV1 -729 54 1 186 43 0 0 chr1 165388490 165388513 -77275840 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 203 264 115 46 chr1 165390148 165390235 -77274118 + MIR3 SINE MIR 1 93 -115 459 266 86 0 chr1 165390267 165390395 -77273958 + MIR3 SINE MIR 63 201 -7 432 214 20 0 chr1 165390986 165391084 -77273269 + MER5A DNA MER1_type 10 109 -80 346 259 52 9 chr1 165391306 165391422 -77272931 - MIR SINE MIR -110 152 32 318 285 26 53 chr1 165393035 165393186 -77271167 - MIR3 SINE MIR -16 192 46 367 167 13 13 chr1 165394955 165395033 -77269320 + MIR SINE MIR 101 178 -84 207 315 152 22 chr1 165395098 165395298 -77269055 + L2 LINE L2 3002 3249 -64 639 318 20 4 chr1 165395298 165395553 -77268800 + MIR SINE MIR 4 262 0 207 315 152 22 chr1 165395553 165395628 -77268725 + L2 LINE L2 3249 3313 0 358 273 78 89 chr1 165395819 165396090 -77268263 + L2 LINE L2 2809 3076 -196 2089 190 49 7 chr1 165396090 165396538 -77267815 - MLT1C LTR MaLR 0 467 1 237 315 117 0 chr1 165396936 165397098 -77267255 + L2 LINE L2 2809 2989 -324 289 285 111 0 chr1 165397199 165397343 -77267010 - MIR3 SINE MIR -10 198 39 1776 206 19 41 chr1 165397775 165398192 -77266161 + MLT1C LTR MaLR 60 467 0 2627 83 3 28 chr1 165399324 165399687 -77264666 + THE1A LTR MaLR 2 355 0 1165 212 105 41 chr1 165400140 165400578 -77263775 + MLT1C LTR MaLR 1 467 0 227 316 187 18 chr1 165400919 165401090 -77263263 + MIR SINE MIR 50 249 -13 493 277 45 11 chr1 165401441 165401618 -77262735 - MER5A DNA MER1_type 0 189 7 1124 82 0 25 chr1 165401804 165401962 -77262391 + L1PA4 LINE L1 5999 6152 -3 180 308 0 0 chr1 165403878 165403930 -77260423 - L2 LINE L2 -19 3253 3202 227 261 0 0 chr1 165403978 165404024 -77260329 + polypyrimidine Low_complexity Low_complexity 2 47 0 288 274 19 27 chr1 165404621 165404799 -77259554 + L1ME LINE L1 5648 5822 -299 1412 98 74 23 chr1 165404818 165405033 -77259320 - MER30 DNA MER1_type 0 230 5 325 101 14 14 chr1 165405118 165405187 -77259166 + (TG)n Simple_repeat Simple_repeat 2 70 0 372 297 174 10 chr1 165406084 165406279 -77258074 - MIR SINE MIR -2 260 34 181 358 64 18 chr1 165406443 165406552 -77257801 + L2 LINE L2 2910 3023 -249 194 340 168 5 chr1 165407334 165407431 -77256922 + MIR SINE MIR 28 108 -154 303 28 0 0 chr1 165407431 165407467 -77256886 + (ATG)n Simple_repeat Simple_repeat 2 37 0 194 340 168 5 chr1 165407467 165407566 -77256787 + MIR SINE MIR 108 256 -6 214 335 30 71 chr1 165408062 165408259 -77256094 - MIR3 SINE MIR -17 191 3 841 259 106 7 chr1 165412358 165412632 -77251721 + L2 LINE L2 2425 2725 -589 1344 170 59 5 chr1 165412632 165413034 -77251319 + MER84 LTR ERVI 1 507 0 631 262 211 29 chr1 165413034 165413514 -77250839 + L2 LINE L2 2721 3313 0 195 204 0 0 chr1 165414204 165414248 -77250105 + (TA)n Simple_repeat Simple_repeat 2 45 0 206 156 22 0 chr1 165414748 165414793 -77249560 + GA-rich Low_complexity Low_complexity 2 47 0 235 349 82 14 chr1 165415348 165415494 -77248859 - L2 LINE L2 -5 3267 3112 217 335 195 5 chr1 165415720 165415941 -77248412 - L2 LINE L2 -337 2977 2715 2006 150 3 0 chr1 165416087 165416373 -77247980 + AluJo SINE Alu 1 287 -25 192 260 26 78 chr1 165416846 165416923 -77247430 + MIR SINE MIR 111 183 -79 200 351 13 0 chr1 165418107 165418184 -77246169 + L2 LINE L2 3235 3312 -1 227 274 25 76 chr1 165420098 165420255 -77244098 + Charlie8 DNA MER1_type 139 287 -2130 320 255 32 0 chr1 165420344 165420438 -77243915 - MIR SINE MIR -90 118 22 445 286 145 41 chr1 165422207 165423022 -77241331 + L2 LINE L2 2372 3291 -22 189 281 18 0 chr1 165423308 165423365 -77240988 + L2 LINE L2 2920 2977 -336 1704 134 7 39 chr1 165423565 165423848 -77240505 + AluSx SINE Alu 39 312 0 270 311 0 47 chr1 165424109 165424257 -77240096 + (CACCC)n Simple_repeat Simple_repeat 3 143 0 2998 163 1 3 chr1 165424473 165425090 -77239263 + L1PA13 LINE L1 1837 2463 -4334 * 11017 177 10 42 chr1 165425076 165427373 -77236980 + L1PA13 LINE L1 3212 5435 -1362 6201 96 25 6 chr1 165427425 165428804 -77235549 + L1PA13 LINE L1 5412 6814 0 1027 108 32 0 chr1 165428804 165428962 -77235391 + L1MA3 LINE L1 6143 6305 0 21 0 0 0 chr1 165428965 165428986 -77235367 + AT_rich Low_complexity Low_complexity 1 21 0 449 206 21 0 chr1 165430434 165430531 -77233822 + MER5A DNA MER1_type 7 105 -84 306 299 11 0 chr1 165430618 165430705 -77233648 + L2 LINE L2 3225 3312 -1 223 259 0 0 chr1 165432790 165432844 -77231509 - MER5A DNA MER1_type 0 189 136 259 311 78 0 chr1 165432957 165433047 -77231306 + L2 LINE L2 3155 3251 -21 335 258 75 0 chr1 165434489 165434609 -77229744 + MIR SINE MIR 124 252 -10 192 125 0 0 chr1 165434623 165434655 -77229698 + (ATG)n Simple_repeat Simple_repeat 2 33 0 359 332 168 40 chr1 165435011 165435409 -77228944 + L2 LINE L2 2809 3257 -15 870 263 24 4 chr1 165436132 165436383 -77227970 - MIR SINE MIR -5 257 2 243 207 24 37 chr1 165436726 165436808 -77227545 + MIR SINE MIR 139 219 -43 193 313 38 12 chr1 165436840 165436920 -77227433 - MIR SINE MIR -153 109 28 201 196 18 36 chr1 165437062 165437118 -77227235 + (TG)n Simple_repeat Simple_repeat 1 55 0 180 227 0 23 chr1 165437287 165437331 -77227022 + L2 LINE L2 3216 3258 -14 280 328 42 16 chr1 165438372 165438561 -77225792 + L2 LINE L2 2690 2883 -431 393 138 0 0 chr1 165442385 165442443 -77221910 - MLT1H LTR MaLR 0 549 492 1234 158 8 62 chr1 165442447 165442687 -77221666 - MLT2D LTR ERVL 0 414 188 24 0 0 0 chr1 165442687 165442711 -77221642 + AT_rich Low_complexity Low_complexity 1 24 0 1540 215 3 3 chr1 165442711 165442999 -77221354 - AluJo SINE Alu -24 288 1 983 141 0 0 chr1 165442999 165443134 -77221219 - AluJo SINE Alu -177 135 1 983 146 97 0 chr1 165443139 165443324 -77221029 - MLT2D LTR ERVL -211 203 1 1252 239 132 11 chr1 165443402 165443758 -77220595 - MLT1H LTR MaLR -137 412 14 21 0 0 0 chr1 165444531 165444552 -77219801 + AT_rich Low_complexity Low_complexity 1 21 0 213 375 83 12 chr1 165445250 165445490 -77218863 + L2 LINE L2 2233 2489 -825 4846 176 15 53 chr1 165446668 165447237 -77217116 + L1MA9 LINE L1 4330 4919 -1393 2311 110 3 0 chr1 165447237 165447537 -77216816 + AluSc SINE Alu 1 301 -8 4846 176 15 53 chr1 165447537 165448815 -77215538 + L1MA9 LINE L1 4919 6105 -207 438 291 102 34 chr1 165449029 165449324 -77215029 - L2 LINE L2 -1 3312 2998 241 236 36 0 chr1 165450041 165450096 -77214257 + CT-rich Low_complexity Low_complexity 2 58 0 2127 180 18 3 chr1 165450351 165450735 -77213618 - MLT1B LTR MaLR 0 390 1 943 276 32 35 chr1 165451940 165452252 -77212101 - MER110 LTR ERV1 -16 475 165 381 214 39 91 chr1 165452433 165452514 -77211839 - MER110-int LTR ERV1 0 4647 4576 2423 222 27 42 chr1 165452514 165453014 -77211339 + MLT1E2 LTR MaLR 1 490 -136 1711 171 6 34 chr1 165453014 165453335 -77211018 + AluJb SINE Alu 1 312 0 2423 222 27 42 chr1 165453335 165453470 -77210883 + MLT1E2 LTR MaLR 490 626 0 381 214 39 91 chr1 165453470 165453542 -77210811 - MER110-int LTR ERV1 -71 4576 4502 553 148 113 43 chr1 165453746 165453861 -77210492 + FLAM_C SINE Alu 1 123 -10 630 146 0 0 chr1 165454301 165454411 -77209942 + (TCCC)n Simple_repeat Simple_repeat 1 110 0 198 284 108 14 chr1 165455766 165455840 -77208513 - L2 LINE L2 0 3272 3192 502 341 102 7 chr1 165455886 165456170 -77208183 - L2 LINE L2 -509 2805 2495 2241 116 3 0 chr1 165458430 165458732 -77205621 + AluSq SINE Alu 3 305 -8 187 309 0 0 chr1 165458753 165458808 -77205545 - L2 LINE L2 -3 3269 3215 243 305 12 0 chr1 165458852 165458934 -77205419 + L1M4 LINE L1 4753 4835 -1311 2247 78 0 0 chr1 165459497 165459768 -77204585 + AluY SINE Alu 35 305 -6 3635 128 38 21 chr1 165460133 165460421 -77203932 + LTR29 LTR ERV1 9 291 -331 1857 151 97 31 chr1 165460421 165460771 -77203582 - MER83C LTR ERV1 0 373 1 3635 128 38 21 chr1 165460771 165461086 -77203267 + LTR29 LTR ERV1 291 622 0 3291 164 11 74 chr1 165461265 165461970 -77202383 - MER4D LTR ERV1 0 903 243 1148 178 139 4 chr1 165462030 165462158 -77202195 - MER49 LTR ERV1 -629 294 185 2041 167 36 0 chr1 165462158 165462518 -77201835 - MER83C LTR ERV1 0 373 1 1148 178 139 4 chr1 165462518 165462648 -77201705 - MER49 LTR ERV1 -738 185 1 422 282 112 5 chr1 165462667 165462855 -77201498 - MIR SINE MIR -8 254 47 867 169 85 112 chr1 165463662 165463957 -77200396 + MER58B DNA MER1_type 38 324 -17 3211 115 20 63 chr1 165464067 165464273 -77200080 + MER4B LTR ERV1 1 214 -565 2327 106 0 3 chr1 165464273 165464575 -77199778 - AluSg SINE Alu -9 301 1 3211 115 20 63 chr1 165464575 165465012 -77199341 + MER4B LTR ERV1 214 779 0 363 255 101 18 chr1 165466027 165466222 -77198131 - L3 LINE CR1 -84 1493 1245 1087 179 18 41 chr1 165466733 165466951 -77197402 + LTR31 LTR ERV1 103 315 -304 387 273 29 14 chr1 165467128 165467267 -77197086 + LTR43 LTR ERV1 181 321 -281 840 243 53 14 chr1 165467449 165467687 -77196666 + LTR31 LTR ERV1 337 512 -19 2354 114 145 72 chr1 165467957 165468432 -77195921 + LTR54 LTR ERV1 1 510 0 754 128 0 68 chr1 165468639 165468750 -77195603 + FLAM_C SINE Alu 2 104 -208 2341 115 45 25 chr1 165468750 165469107 -77195246 + THE1B LTR MaLR 1 364 0 754 128 0 68 chr1 165469107 165469128 -77195225 + FLAM_C SINE Alu 104 125 -187 571 245 104 18 chr1 165470279 165470442 -77193911 + MLT1F LTR MaLR 1 177 -365 360 202 35 44 chr1 165470444 165470558 -77193795 - MER39 LTR ERV1 0 707 595 1818 175 0 13 chr1 165470559 165470868 -77193485 - AluSx SINE Alu -7 305 1 1316 181 55 0 chr1 165470870 165471162 -77193191 - L1MA4 LINE L1 -2 6298 5991 1245 214 54 64 chr1 165471202 165471614 -77192739 - MER39 LTR ERV1 -117 590 1 1532 199 56 28 chr1 165471614 165471970 -77192383 + MLT1F LTR MaLR 175 540 -2 330 295 44 13 chr1 165472295 165472436 -77191917 + MIR SINE MIR 24 169 -63 207 208 104 39 chr1 165472769 165472846 -77191507 - L2 LINE L2 0 3313 3232 26 0 0 0 chr1 165473358 165473384 -77190969 + AT_rich Low_complexity Low_complexity 1 26 0 201 74 0 0 chr1 165475674 165475701 -77188652 + (A)n Simple_repeat Simple_repeat 1 27 0 1059 255 58 47 chr1 165475894 165476548 -77187805 + L1ME LINE L1 4870 5546 -618 1629 140 147 0 chr1 165476548 165476813 -77187540 - AluSx SINE Alu -8 304 1 1059 255 58 47 chr1 165476813 165476873 -77187480 + L1ME LINE L1 5546 5604 -560 417 253 42 32 chr1 165476963 165477153 -77187200 - L1 LINE L1 -1825 4321 4130 676 189 0 0 chr1 165477205 165477316 -77187037 + FLAM_C SINE Alu 16 126 -17 32 0 0 0 chr1 165477316 165477348 -77187005 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr1 165477638 165477662 -77186691 + (TG)n Simple_repeat Simple_repeat 1 24 0 652 291 50 17 chr1 165477709 165477950 -77186403 - MIR SINE MIR -10 252 4 1153 181 54 108 chr1 165478591 165478905 -77185448 - AluJo SINE Alu -4 298 2 315 272 130 65 chr1 165480047 165480231 -77184122 - MIR SINE MIR -40 222 27 200 273 212 86 chr1 165481981 165482179 -77182174 + L2 LINE L2 3034 3256 -16 261 0 0 0 chr1 165482179 165482208 -77182145 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 205 162 0 0 chr1 165482399 165482436 -77181917 + (ATG)n Simple_repeat Simple_repeat 3 39 0 684 235 94 47 chr1 165482978 165483154 -77181199 - L1MC5 LINE L1 -279 7682 7485 2328 104 3 0 chr1 165483154 165483462 -77180891 - AluY SINE Alu -2 309 1 684 235 94 47 chr1 165483462 165483583 -77180770 - L1MC5 LINE L1 -476 7485 7371 6614 79 7 34 chr1 165483830 165485521 -77178832 - L1PA13 LINE L1 -14 6149 4471 382 328 94 0 chr1 165485811 165486003 -77178350 - MER63A DNA MER1_type 0 210 1 227 307 59 10 chr1 165486436 165486537 -77177816 + MIR SINE MIR 117 222 -40 187 309 93 0 chr1 165488191 165488288 -77176065 - L2 LINE L2 -815 2499 2394 1526 201 29 16 chr1 165488427 165488740 -77175613 + MER77 LTR ERV1 289 605 0 2638 45 0 7 chr1 165488780 165489090 -77175263 + AluY SINE Alu 1 308 -3 5206 275 53 42 chr1 165489696 165491541 -77172812 + MER110-int LTR ERV1 2089 3954 -693 2358 45 0 0 chr1 165491566 165491834 -77172519 - AluY SINE Alu -9 302 35 243 305 12 0 chr1 165492398 165492480 -77171873 - L1M4 LINE L1 -1311 4835 4753 187 309 0 0 chr1 165492524 165492579 -77171774 + L2 LINE L2 3215 3269 -3 2259 115 3 0 chr1 165492600 165492904 -77171449 - AluSq SINE Alu -8 305 1 2980 188 0 24 chr1 165493043 165493549 -77170804 - L1PA13 LINE L1 -5190 1597 1104 389 133 8 25 chr1 165493549 165493650 -77170703 - L1MA2 LINE L1 -146 6158 6053 2393 93 0 0 chr1 165494010 165494311 -77170042 - AluSg SINE Alu -9 301 1 792 100 0 0 chr1 165495220 165495340 -77169013 + (TCC)n Simple_repeat Simple_repeat 2 121 0 1575 181 0 38 chr1 165495340 165495811 -77168542 - AluJb SINE Alu 0 460 1 526 264 93 6 chr1 165496065 165496261 -77168092 + MIR SINE MIR 34 245 -17 1359 233 32 40 chr1 165496329 165496729 -77167624 - MLT2C1 LTR ERVL 0 397 1 278 276 86 17 chr1 165496729 165496845 -77167508 + L2 LINE L2 3146 3269 -3 210 340 53 0 chr1 165496855 165496949 -77167404 - L2 LINE L2 -493 2821 2723 368 255 31 82 chr1 165498241 165498437 -77165916 - L2 LINE L2 -177 3095 2910 1505 214 9 35 chr1 165498690 165499007 -77165346 + AluJo SINE Alu 1 309 -3 504 72 0 0 chr1 165499015 165499084 -77165269 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 194 294 15 0 chr1 165499154 165499222 -77165131 - L3b LINE CR1 -195 1388 1320 1716 181 7 7 chr1 165500542 165500841 -77163512 - AluJo SINE Alu -13 299 1 1811 161 34 0 chr1 165501083 165501374 -77162979 - AluJb SINE Alu -9 303 3 1560 137 149 36 chr1 165501591 165501927 -77162426 - THE1C LTR MaLR -1 374 1 668 189 7 0 chr1 165502794 165502942 -77161411 + (CCA)n Simple_repeat Simple_repeat 1 149 0 881 162 0 17 chr1 165502944 165503123 -77161230 + (CACCAT)n Simple_repeat Simple_repeat 5 180 0 903 239 101 56 chr1 165503393 165503819 -77160534 + MLT1J1 LTR MaLR 2 446 0 425 263 124 7 chr1 165504272 165504409 -77159944 + MIR3 SINE MIR 18 170 -38 1317 233 66 11 chr1 165505455 165505803 -77158550 - MLT1C LTR MaLR -2 465 99 2052 165 3 0 chr1 165506083 165506423 -77157930 + L1MC1 LINE L1 5991 6331 -2 306 0 0 0 chr1 165508443 165508477 -77155876 + (CA)n Simple_repeat Simple_repeat 2 35 0 1628 219 74 23 chr1 165508716 165509149 -77155204 + MLT1C LTR MaLR 5 459 -8 285 75 0 0 chr1 165509642 165509682 -77154671 + (CA)n Simple_repeat Simple_repeat 2 41 0 2302 101 0 7 chr1 165509890 165510197 -77154156 + AluSc SINE Alu 3 307 -2 195 129 0 0 chr1 165511387 165511418 -77152935 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 190 214 0 54 chr1 165511427 165511483 -77152870 + MIR SINE MIR 209 261 -1 25 90 0 0 chr1 165511579 165511646 -77152707 + AT_rich Low_complexity Low_complexity 1 67 0 619 176 34 8 chr1 165512451 165512570 -77151783 + FLAM_A SINE Alu 3 124 -9 462 252 0 58 chr1 165512646 165512785 -77151568 + MIR3 SINE MIR 77 207 -1 230 169 0 77 chr1 165512961 165513026 -77151327 + MIR SINE MIR 184 243 -19 207 100 0 0 chr1 165513524 165513554 -77150799 + (A)n Simple_repeat Simple_repeat 1 30 0 2214 93 6 35 chr1 165514347 165514659 -77149694 + AluSx SINE Alu 1 303 -9 324 259 116 18 chr1 165515134 165515246 -77149107 - MIR SINE MIR -29 233 111 502 246 129 19 chr1 165515376 165515632 -77148721 - L2 LINE L2 -16 3297 3014 196 348 22 11 chr1 165515779 165515871 -77148482 - MIR SINE MIR -122 140 48 329 252 99 95 chr1 165516110 165516235 -77148118 - MIR SINE MIR 0 262 134 771 176 0 131 chr1 165516235 165516434 -77147919 - FAM SINE Alu -1 174 2 329 252 99 95 chr1 165516434 165516530 -77147823 - MIR SINE MIR -128 134 40 1444 174 61 69 chr1 165516717 165517078 -77147275 - MLT1A1 LTR MaLR 0 365 8 833 304 104 36 chr1 165518465 165518850 -77145503 - MLT1K LTR MaLR -30 558 148 254 317 33 0 chr1 165519566 165519686 -77144667 - L3 LINE CR1 -8 1569 1446 323 208 0 10 chr1 165520372 165520468 -77143885 + CT-rich Low_complexity Low_complexity 2 96 0 1905 132 3 24 chr1 165521218 165521505 -77142848 + AluSx SINE Alu 1 281 -31 289 0 0 0 chr1 165521505 165521537 -77142816 + (CAAA)n Simple_repeat Simple_repeat 1 164 0 342 304 130 26 chr1 165521826 165522056 -77142297 + L2 LINE L2 2155 2408 -906 195 237 72 82 chr1 165522203 165522300 -77142053 + L2 LINE L2 2996 3091 -181 417 277 30 43 chr1 165522628 165522806 -77141547 + MIR SINE MIR 6 185 -23 431 320 45 69 chr1 165522809 165523100 -77141253 + L2 LINE L2 2915 3198 -74 988 259 28 16 chr1 165523640 165523895 -77140458 + MIR SINE MIR 5 262 0 263 317 0 0 chr1 165523902 165523984 -77140369 + L3 LINE CR1 1495 1576 -1 244 286 113 68 chr1 165523985 165524118 -77140235 - MIR SINE MIR -71 191 53 438 101 0 0 chr1 165524836 165524905 -77139448 + (GA)n Simple_repeat Simple_repeat 2 70 0 288 0 0 0 chr1 165525539 165525571 -77138782 + (TG)n Simple_repeat Simple_repeat 2 33 0 476 222 198 0 chr1 165528102 165528264 -77136089 - L1ME2 LINE L1 -6 6158 5965 342 115 0 0 chr1 165529002 165529054 -77135299 + (TG)n Simple_repeat Simple_repeat 1 52 0 2352 153 25 8 chr1 165529884 165530277 -77134076 - L1MB3 LINE L1 -52 6131 5732 330 173 15 218 chr1 165531085 165531287 -77133066 - MIR SINE MIR -5 257 97 377 198 38 57 chr1 165531342 165531448 -77132905 - MIR SINE MIR -120 142 39 1453 189 0 30 chr1 165531482 165531783 -77132570 - AluJo SINE Alu 0 312 21 2347 72 0 0 chr1 165532003 165532295 -77132058 - AluY SINE Alu -19 292 1 209 286 18 0 chr1 165532316 165532372 -77131981 + MIR SINE MIR 172 228 -34 639 250 33 38 chr1 165534076 165534260 -77130093 + MIR SINE MIR 50 232 -30 667 278 104 17 chr1 165535617 165535868 -77128485 - MIR SINE MIR 0 262 6 462 327 125 0 chr1 165536840 165537048 -77127305 + MIR SINE MIR 23 256 -6 295 286 46 86 chr1 165537085 165537260 -77127093 - MIR SINE MIR -44 218 51 770 251 120 22 chr1 165537695 165537962 -77126391 + L2 LINE L2 3020 3312 -1 519 334 67 67 chr1 165537991 165538395 -77125958 - L2 LINE L2 -9 3263 2860 180 111 0 0 chr1 165538914 165538941 -77125412 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 770 201 14 0 chr1 165538947 165539091 -77125262 + FRAM SINE Alu 5 150 -26 198 0 0 0 chr1 165539098 165539120 -77125233 + (GA)n Simple_repeat Simple_repeat 2 23 0 26 30 0 0 chr1 165539334 165539367 -77124986 + AT_rich Low_complexity Low_complexity 1 33 0 248 250 18 0 chr1 165539687 165539743 -77124610 + MIR SINE MIR 200 256 -6 2280 309 113 7 chr1 165540150 165541229 -77123124 + L2 LINE L2 782 1974 -1340 26 30 0 0 chr1 165541734 165541767 -77122586 + AT_rich Low_complexity Low_complexity 1 33 0 210 192 192 26 chr1 165542664 165542742 -77121611 - L2 LINE L2 -43 3270 3180 239 353 59 13 chr1 165542750 165542903 -77121450 + L2 LINE L2 2498 2657 -657 638 209 35 9 chr1 165543253 165543368 -77120985 - MLT1A1 LTR MaLR -78 287 170 474 314 83 24 chr1 165543373 165543777 -77120576 + L2 LINE L2 2653 3076 -196 379 306 66 66 chr1 165543829 165543975 -77120378 - L1ME3A LINE L1 -1 6169 6024 3013 112 5 2 chr1 165543975 165544402 -77119951 + MSTA LTR MaLR 1 428 0 379 306 66 66 chr1 165544402 165544556 -77119797 - L1ME3A LINE L1 -145 6025 5869 26 74 0 0 chr1 165544556 165544610 -77119743 + AT_rich Low_complexity Low_complexity 1 54 0 1785 135 24 21 chr1 165544646 165544934 -77119419 - AluSx SINE Alu -12 300 12 434 370 0 0 chr1 165545013 165545151 -77119202 + L2 LINE L2 3134 3271 -1 1983 129 0 0 chr1 165545445 165545725 -77118628 + AluSg SINE Alu 1 280 -30 1706 197 0 7 chr1 165545768 165546078 -77118275 + AluJb SINE Alu 1 308 -4 708 261 107 66 chr1 165547131 165547449 -77116904 - L2 LINE L2 -13 3300 2970 327 174 29 14 chr1 165547519 165547588 -77116765 + MIR3 SINE MIR 109 178 -30 188 286 0 0 chr1 165547609 165547658 -77116695 - L2 LINE L2 -223 3049 3001 1355 228 23 74 chr1 165548075 165548465 -77115888 - MLT1A2 LTR MaLR -4 370 1 406 241 202 8 chr1 165548928 165549122 -77115231 - MIR SINE MIR -6 256 23 318 305 38 9 chr1 165549679 165549784 -77114569 + MIR SINE MIR 20 127 -81 1168 111 6 0 chr1 165551085 165551256 -77113097 - L1PA16 LINE L1 -9 6157 5986 229 320 68 61 chr1 165551262 165551409 -77112944 - MIR SINE MIR -94 168 21 470 310 47 12 chr1 165551731 165551902 -77112451 - MER5B DNA MER1_type 0 178 2 378 247 41 0 chr1 165553409 165553506 -77110847 - MER5A DNA MER1_type -85 104 4 2303 138 77 3 chr1 165555651 165556013 -77108340 - MSTB LTR MaLR -37 389 1 199 321 66 77 chr1 165556018 165556214 -77108139 + L2 LINE L2 2507 2700 -614 736 228 23 6 chr1 165556268 165556439 -77107914 + MIR SINE MIR 73 246 -16 1829 243 90 25 chr1 165556525 165557414 -77106939 + L2 LINE L2 2233 3184 -129 605 311 162 51 chr1 165557955 165558739 -77105614 + L2 LINE L2 2131 3267 -5 435 38 0 0 chr1 165559188 165559241 -77105112 + (TG)n Simple_repeat Simple_repeat 1 53 0 210 286 32 16 chr1 165559705 165559768 -77104585 + L3b LINE CR1 1431 1494 -89 426 20 0 0 chr1 165560475 165560526 -77103827 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 53 0 0 chr1 165560697 165560735 -77103618 + AT_rich Low_complexity Low_complexity 1 38 0 524 299 69 20 chr1 165561750 165561954 -77102399 + L3 LINE CR1 1257 1470 -107 642 329 65 61 chr1 165562050 165562576 -77101777 - L3 LINE CR1 -394 1183 656 241 368 11 0 chr1 165562630 165562725 -77101628 - MIR3 SINE MIR -5 203 108 317 273 125 0 chr1 165562764 165562852 -77101501 - L3 LINE CR1 -1067 510 412 335 138 0 15 chr1 165562914 165562979 -77101374 + (CA)n Simple_repeat Simple_repeat 2 65 0 1022 141 0 27 chr1 165564299 165564483 -77099870 - L1MB3 LINE L1 -8 6175 5997 383 209 53 44 chr1 165564731 165564917 -77099436 - L1MB3 LINE L1 -750 5396 5279 22 35 0 0 chr1 165565376 165565405 -77098948 + AT_rich Low_complexity Low_complexity 1 29 0 210 263 18 0 chr1 165565439 165565496 -77098857 + CT-rich Low_complexity Low_complexity 2 59 0 436 219 210 0 chr1 165566648 165566767 -77097586 - MER5A DNA MER1_type -6 183 40 248 0 31 0 chr1 165567117 165567149 -77097204 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 665 275 98 41 chr1 165568273 165568589 -77095764 + LTR16B LTR ERVL 131 464 0 1257 257 86 26 chr1 165568745 165569235 -77095118 + L2 LINE L2 783 1301 -2013 1679 255 81 81 chr1 165569240 165569702 -77094651 + L2 LINE L2 2357 2813 -500 1773 113 73 4 chr1 165569702 165569977 -77094376 - AluSq SINE Alu -19 294 1 1679 255 81 81 chr1 165569977 165570381 -77093972 + L2 LINE L2 2813 3216 -97 253 289 24 24 chr1 165570631 165570714 -77093639 + MIR SINE MIR 108 190 -72 1954 103 4 0 chr1 165571634 165571905 -77092448 - AluSp SINE Alu -9 304 33 243 0 0 0 chr1 165572290 165572317 -77092036 + (A)n Simple_repeat Simple_repeat 1 27 0 507 118 0 0 chr1 165572511 165572596 -77091757 + (TCCA)n Simple_repeat Simple_repeat 1 85 0 255 352 99 57 chr1 165572619 165573012 -77091341 - L2 LINE L2 -48 3224 2849 2690 197 72 0 chr1 165573012 165573540 -77090813 - MLT1F1 LTR MaLR -1 566 1 255 352 99 57 chr1 165573540 165573572 -77090781 - L2 LINE L2 -423 2849 2820 2016 157 37 8 chr1 165573572 165573949 -77090404 - MLT1B LTR MaLR 0 390 3 255 352 99 57 chr1 165573949 165574078 -77090275 - L2 LINE L2 -452 2820 2645 490 315 47 75 chr1 165574094 165574523 -77089830 - L2 LINE L2 -782 2532 2116 272 178 0 0 chr1 165574788 165574833 -77089520 - 5S rRNA rRNA -76 45 1 676 186 26 83 chr1 165575405 165575598 -77088755 + L2 LINE L2 3132 3313 0 632 230 46 7 chr1 165577039 165577191 -77087162 + MIR SINE MIR 105 262 0 203 360 111 0 chr1 165577150 165577375 -77086978 + L2 LINE L2 1877 2126 -1188 * 886 299 136 33 chr1 165577421 165578338 -77086015 + L2 LINE L2 2284 3301 -12 306 273 102 31 chr1 165578458 165578586 -77085767 + MIR SINE MIR 70 206 -56 447 310 55 7 chr1 165579477 165579622 -77084731 + L2 LINE L2 3119 3270 -2 209 265 0 0 chr1 165580061 165580110 -77084243 - L2 LINE L2 0 3313 3265 3141 148 15 13 chr1 165581511 165582052 -77082301 + L1PA16 LINE L1 5622 6163 -3 210 71 0 0 chr1 165582463 165582491 -77081862 + (TG)n Simple_repeat Simple_repeat 1 28 0 432 272 38 6 chr1 165583655 165583813 -77080540 + MER103 DNA DNA 3 165 -1 333 315 55 42 chr1 165583909 165584074 -77080279 + MIR3 SINE MIR 2 168 -40 439 298 21 57 chr1 165584174 165584315 -77080038 + L2 LINE L2 3137 3272 0 291 319 141 0 chr1 165586118 165586281 -77078072 + MIR SINE MIR 77 262 0 703 206 146 20 chr1 165587484 165587683 -77076670 - MIR SINE MIR -25 237 14 207 296 9 26 chr1 165588033 165588148 -77076205 + CT-rich Low_complexity Low_complexity 2 114 0 189 299 26 86 chr1 165589042 165589159 -77075194 + L2 LINE L2 3187 3296 -17 284 314 149 8 chr1 165590115 165590236 -77074117 - MER5A DNA MER1_type -2 176 39 338 296 37 38 chr1 165591453 165591631 -77072722 + MIR SINE MIR 16 192 -63 201 291 0 0 chr1 165591659 165591714 -77072639 + MIR SINE MIR 34 88 -120 239 388 39 0 chr1 165594852 165594981 -77069372 + L2 LINE L2 3139 3272 0 197 286 53 45 chr1 165595257 165595390 -77068963 - L2 LINE L2 -1 3312 3179 449 262 180 0 chr1 165596297 165596469 -77067884 - MIR SINE MIR -11 251 49 351 0 0 0 chr1 165596584 165596623 -77067730 + (CA)n Simple_repeat Simple_repeat 2 40 0 630 161 37 43 chr1 165596788 165596950 -77067403 + MER53 DNA DNA 1 161 -28 307 259 202 74 chr1 165597309 165597784 -77066569 + L2 LINE L2 2331 2866 -448 203 338 54 0 chr1 165597952 165598026 -77066327 + L2 LINE L2 3236 3313 0 411 356 63 5 chr1 165599656 165599878 -77064475 + MIR SINE MIR 27 261 -1 569 193 166 0 chr1 165600462 165600602 -77063751 - MER5A DNA MER1_type -23 166 4 510 323 172 0 chr1 165600902 165601088 -77063265 + L2 LINE L2 3053 3270 -2 316 287 18 37 chr1 165601310 165601474 -77062879 - L2 LINE L2 -179 3093 2933 1501 175 11 25 chr1 165601482 165601768 -77062585 + AluJo SINE Alu 1 282 -30 439 239 44 9 chr1 165602324 165602437 -77061916 + MIR SINE MIR 88 204 -58 215 333 64 0 chr1 165602784 165602862 -77061491 + L2 LINE L2 3190 3272 0 206 239 28 70 chr1 165603246 165603317 -77061036 - MIR3 SINE MIR -4 204 137 721 336 100 43 chr1 165604405 165605072 -77059281 - L3 LINE CR1 -16 1561 857 332 248 124 0 chr1 165605463 165605568 -77058785 - MIR SINE MIR -13 249 132 224 297 23 23 chr1 165606710 165606838 -77057515 + GA-rich Low_complexity Low_complexity 1 128 0 376 251 198 48 chr1 165607138 165607325 -77057028 - MLT1G LTR MaLR -28 562 313 282 211 42 42 chr1 165608016 165608087 -77056266 - MIR SINE MIR -65 143 73 258 222 42 28 chr1 165608373 165608445 -77055908 - MIR3 SINE MIR -50 158 86 180 325 51 60 chr1 165608769 165608886 -77055467 - MIR SINE MIR -29 233 118 6126 28 30 0 chr1 165610589 165610647 -77053706 - L1PA4 LINE L1 -2 6153 6098 291 54 0 0 chr1 165610647 165610684 -77053669 + (TA)n Simple_repeat Simple_repeat 1 37 0 6126 28 30 0 chr1 165610684 165611352 -77053001 - L1PA4 LINE L1 -57 6098 5405 474 18 0 0 chr1 165612338 165612393 -77051960 + (CA)n Simple_repeat Simple_repeat 1 55 0 252 316 71 0 chr1 165612500 165612598 -77051755 - MER91A DNA MER1_type -74 122 18 546 243 107 17 chr1 165612994 165613171 -77051182 + MIR SINE MIR 2 194 -68 2353 52 26 13 chr1 165613513 165613818 -77050535 + AluY SINE Alu 1 309 -2 353 268 61 54 chr1 165615356 165615690 -77048663 - L1MC/D LINE L1 -583 5659 5302 2036 125 171 11 chr1 165615690 165616059 -77048294 - MSTA LTR MaLR 0 428 1 353 268 61 54 chr1 165616059 165616108 -77048245 - L1MC/D LINE L1 -940 5302 5255 240 159 57 0 chr1 165616330 165616418 -77047935 + (TATAA)n Simple_repeat Simple_repeat 2 94 0 866 287 75 21 chr1 165616436 165616865 -77047488 - L1MC/D LINE L1 -2108 4038 3587 28 0 0 0 chr1 165616971 165616999 -77047354 + AT_rich Low_complexity Low_complexity 1 28 0 204 97 0 0 chr1 165617450 165617481 -77046872 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 356 206 52 10 chr1 165617858 165617955 -77046398 + MIR SINE MIR 80 180 -82 388 298 73 22 chr1 165617972 165618150 -77046203 + L2 LINE L2 2671 2857 -457 347 364 16 8 chr1 165618228 165618349 -77046004 + L2 LINE L2 2958 3079 -193 776 282 69 46 chr1 165618358 165618861 -77045492 + L2 LINE L2 2537 3277 -36 848 136 43 0 chr1 165618887 165619027 -77045326 - FAM SINE Alu -20 165 20 1654 159 38 3 chr1 165619069 165619359 -77044994 - AluJo SINE Alu -12 300 1 304 315 62 31 chr1 165619390 165619520 -77044833 + L2 LINE L2 3180 3313 0 452 290 155 0 chr1 165620600 165620755 -77043598 + MIR SINE MIR 70 248 -14 470 220 137 18 chr1 165621323 165621491 -77042862 + MER53 DNA DNA 2 189 0 1532 173 21 28 chr1 165621691 165621980 -77042373 - AluJo SINE Alu -4 308 22 24 0 0 0 chr1 165622161 165622185 -77042168 + AT_rich Low_complexity Low_complexity 1 24 0 420 20 0 0 chr1 165622268 165622317 -77042036 + (TG)n Simple_repeat Simple_repeat 2 50 0 269 213 12 25 chr1 165622326 165622406 -77041947 - L1MC4 LINE L1 -1350 6692 6614 213 175 0 0 chr1 165622400 165622440 -77041913 + (TA)n Simple_repeat Simple_repeat 2 41 0 * 357 217 64 76 chr1 165622450 165622607 -77041746 + L1MDa LINE L1 1491 1645 -4885 740 242 149 71 chr1 165622811 165623274 -77041079 - MLT1J LTR MaLR -12 499 1 515 299 39 8 chr1 165623275 165623469 -77040884 + L1MDa LINE L1 1903 2101 -807 730 309 38 45 chr1 165623665 165624108 -77040245 + L1ME LINE L1 5126 5571 -550 2000 160 38 72 chr1 165624108 165624551 -77039802 - MSTA LTR MaLR 0 428 1 730 309 38 45 chr1 165624551 165624583 -77039770 + L1ME LINE L1 5571 5602 -519 2063 138 34 0 chr1 165624583 165624881 -77039472 - AluJb SINE Alu -4 308 1 730 309 38 45 chr1 165624881 165625115 -77039238 + L1ME LINE L1 5602 5819 -302 1946 124 7 93 chr1 165625332 165625560 -77038793 + L1MA8 LINE L1 5896 6142 -149 2035 156 0 0 chr1 165625560 165625861 -77038492 - AluJb SINE Alu -7 305 5 1946 124 7 93 chr1 165625861 165625966 -77038387 + L1MA8 LINE L1 6142 6187 -104 2524 74 0 0 chr1 165625966 165626265 -77038088 + AluSc SINE Alu 1 299 -10 1946 124 7 93 chr1 165626265 165626358 -77037995 + L1MA8 LINE L1 6187 6286 -5 211 231 108 15 chr1 165626675 165626740 -77037613 - MIR3 SINE MIR -127 81 11 954 256 55 4 chr1 165626773 165627011 -77037342 + MIR SINE MIR 12 261 -1 213 362 53 0 chr1 165628140 165628234 -77036119 + MIR SINE MIR 65 163 -99 725 247 87 110 chr1 165628250 165628696 -77035657 - MLT1J LTR MaLR -51 460 25 1503 184 61 0 chr1 165629409 165629670 -77034683 - AluJo SINE Alu -35 277 1 276 283 81 20 chr1 165630636 165630735 -77033618 + MIR SINE MIR 154 258 -4 313 376 56 0 chr1 165630928 165631053 -77033300 + MIR SINE MIR 13 144 -118 230 305 99 38 chr1 165631644 165631775 -77032578 + MIR SINE MIR 124 262 0 1807 147 25 0 chr1 165633202 165633481 -77030872 - AluJo SINE Alu -26 286 1 3085 179 97 7 chr1 165633504 165634197 -77030156 - L1MD2 LINE L1 0 6359 5605 1889 172 0 0 chr1 165634201 165634503 -77029850 - AluJo SINE Alu -10 302 1 362 277 33 16 chr1 165634543 165634727 -77029626 - L1ME3A LINE L1 -233 5937 5751 331 174 130 33 chr1 165634840 165634932 -77029421 + MIR SINE MIR 45 145 -63 183 80 0 0 chr1 165634941 165634966 -77029387 + (TAA)n Simple_repeat Simple_repeat 2 26 0 187 208 52 0 chr1 165635257 165635310 -77029043 - MIR SINE MIR -92 170 115 194 254 0 51 chr1 165635558 165635617 -77028736 + L3 LINE CR1 1233 1288 -289 202 274 82 41 chr1 165635714 165635787 -77028566 + MIR3 SINE MIR 99 174 -34 332 216 31 62 chr1 165636303 165636400 -77027953 + MIR SINE MIR 90 183 -79 255 184 0 0 chr1 165636562 165636611 -77027742 - L1MB8 LINE L1 -37 6141 6093 1801 146 47 25 chr1 165636630 165636993 -77027360 - L1MB4 LINE L1 -6 6174 5804 563 276 111 5 chr1 165637016 165637215 -77027138 - MIR SINE MIR -30 232 13 807 260 48 12 chr1 165637903 165638153 -77026200 - MER46C DNA MER2_type 0 338 80 243 298 179 13 chr1 165638841 165638992 -77025361 - MER91A DNA MER1_type -18 178 3 213 268 37 24 chr1 165640288 165640370 -77023983 - MIR3 SINE MIR -17 191 109 196 315 206 0 chr1 165640528 165640620 -77023733 - L2 LINE L2 -18 3254 3144 216 0 0 0 chr1 165640699 165640723 -77023630 + (T)n Simple_repeat Simple_repeat 1 24 0 233 143 0 20 chr1 165640859 165640908 -77023445 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 646 280 129 9 chr1 165640943 165641168 -77023185 + MIR SINE MIR 6 257 -5 230 302 52 0 chr1 165641486 165641582 -77022771 - L2 LINE L2 -299 2973 2873 336 191 50 43 chr1 165641832 165641973 -77022380 - MER113 DNA MER1_type? -374 147 6 193 270 230 14 chr1 165642473 165642547 -77021806 + MER5A DNA MER1_type 5 94 -95 338 287 152 18 chr1 165642580 165642744 -77021609 + MIR SINE MIR 53 238 -24 252 289 13 37 chr1 165642772 165642861 -77021492 + MER5A DNA MER1_type 91 189 0 23 0 0 0 chr1 165643334 165643357 -77020996 + AT_rich Low_complexity Low_complexity 1 23 0 256 323 83 0 chr1 165643778 165643874 -77020479 + MIR SINE MIR 103 206 -56 284 247 13 39 chr1 165644361 165644438 -77019915 + MER5A DNA MER1_type 114 188 -1 477 273 143 25 chr1 165644467 165644778 -77019575 + L3 LINE CR1 1147 1554 -23 358 330 56 46 chr1 165645388 165645585 -77018768 + MIR SINE MIR 51 249 -13 491 260 113 0 chr1 165645948 165646098 -77018255 + MIR SINE MIR 90 256 -6 360 271 42 17 chr1 165646862 165646980 -77017373 - L2 LINE L2 -1 3271 3151 216 0 0 0 chr1 165647273 165647297 -77017056 + (CA)n Simple_repeat Simple_repeat 2 25 0 206 289 12 24 chr1 165647612 165647695 -77016658 + C-rich Low_complexity Low_complexity 2 83 0 435 299 159 5 chr1 165650749 165650963 -77013390 - MIR SINE MIR -14 248 2 180 280 83 53 chr1 165651533 165651665 -77012688 - L3b LINE CR1 -319 1264 1129 533 300 86 9 chr1 165653403 165653613 -77010740 + MIR SINE MIR 23 248 -14 403 331 12 25 chr1 165653896 165654056 -77010297 + MIR3 SINE MIR 45 202 -6 663 284 142 23 chr1 165654392 165654702 -77009651 - MLT1I LTR MaLR 0 409 63 509 301 0 7 chr1 165654756 165654892 -77009461 - MIR3 SINE MIR -42 166 32 191 259 247 0 chr1 165654922 165655003 -77009350 + MIR SINE MIR 45 145 -63 423 283 92 17 chr1 165655371 165655544 -77008809 - MIR SINE MIR -56 206 21 1846 255 163 13 chr1 165656665 165657587 -77006766 - L2 LINE L2 0 3313 2186 294 258 187 104 chr1 165657546 165657728 -77006625 - MIR SINE MIR -3 259 63 * 306 259 78 26 chr1 165657754 165657870 -77006483 + MIR SINE MIR 75 196 -66 186 309 48 36 chr1 165658055 165658139 -77006214 + L2 LINE L2 3144 3228 -44 1291 175 44 19 chr1 165658376 165658698 -77005655 - MER33 DNA MER1_type 0 324 1 402 226 235 0 chr1 165658757 165658859 -77005494 - FLAM_A SINE Alu -11 131 6 274 278 61 43 chr1 165659672 165659787 -77004566 + MIR SINE MIR 102 218 -44 490 274 52 7 chr1 165659819 165659954 -77004399 - MIR SINE MIR -76 186 46 550 310 61 9 chr1 165661022 165661235 -77003118 + MIR SINE MIR 39 262 0 1942 153 3 17 chr1 165661648 165661948 -77002405 - AluSx SINE Alu -16 296 1 379 273 77 28 chr1 165662525 165662668 -77001685 - MER5A DNA MER1_type 0 189 40 283 210 65 0 chr1 165663283 165663345 -77001008 + MIR SINE MIR 188 253 -9 244 208 62 0 chr1 165663722 165663770 -77000583 - MIR SINE MIR -184 78 28 650 197 60 33 chr1 165664337 165664520 -76999833 - MER53 DNA DNA 0 189 2 599 273 48 6 chr1 165664719 165664855 -76999498 - MIR SINE MIR -31 231 85 2291 118 0 0 chr1 165664855 165665159 -76999194 + AluSc SINE Alu 1 304 -5 599 273 48 6 chr1 165665159 165665187 -76999166 - MIR SINE MIR -177 85 60 2353 60 0 3 chr1 165665230 165665540 -76998813 - AluY SINE Alu 0 309 1 254 280 196 37 chr1 165665982 165666089 -76998264 - L2 LINE L2 -5 3267 3144 187 246 66 33 chr1 165666512 165666573 -76997780 - L2 LINE L2 -40 3232 3170 2097 134 134 11 chr1 165667001 165667382 -76996971 + MSTA LTR MaLR 1 428 0 277 233 75 25 chr1 165667676 165667796 -76996557 - MLT1L LTR MaLR -14 601 476 2439 198 13 52 chr1 165667924 165668143 -76996210 + MER87 LTR ERV1 12 238 -303 1577 158 0 53 chr1 165668143 165668428 -76995925 - AluJb SINE Alu -28 284 15 2439 198 13 52 chr1 165668428 165668760 -76995593 + MER87 LTR ERV1 238 541 0 300 283 11 11 chr1 165668778 165668870 -76995483 - MLT1L LTR MaLR -328 287 196 2154 218 52 94 chr1 165669117 165669928 -76994425 - MER21B LTR ERV1 -86 777 1 190 129 32 0 chr1 165670339 165670370 -76993983 - L2 LINE L2 -91 3181 3150 849 159 7 14 chr1 165670833 165670978 -76993375 + AluJ SINE Alu 1 144 -168 1028 184 0 0 chr1 165671109 165671298 -76993055 + AluJ SINE Alu 120 308 0 485 143 95 0 chr1 165671501 165671606 -76992747 - L1MA4 LINE L1 -1 6299 6185 242 288 90 18 chr1 165672534 165672645 -76991708 + MIR3 SINE MIR 65 183 -25 194 242 53 68 chr1 165672639 165672771 -76991582 - L2 LINE L2 -167 3146 3017 * 2570 194 113 74 chr1 165672879 165673672 -76990681 + LTR1B LTR ERV1 1 824 -2 268 277 18 71 chr1 165673689 165673801 -76990552 - L2 LINE L2 -6 3266 3161 1144 282 47 21 chr1 165674068 165674454 -76989899 - L2 LINE L2 -4 3309 2914 264 204 0 97 chr1 165675176 165675269 -76989084 - L1ME3A LINE L1 -7 6163 6080 364 205 13 13 chr1 165675292 165675370 -76988983 + MIR SINE MIR 171 248 -14 4523 121 97 13 chr1 165676409 165677171 -76987182 + LTR1B LTR ERV1 1 826 0 188 231 58 19 chr1 165677289 165677341 -76987012 - L2 LINE L2 -9 3263 3210 272 108 308 0 chr1 165678081 165678146 -76986207 - MER67C LTR ERV1 0 710 626 2626 144 137 5 chr1 165678195 165678750 -76985603 - MER67C LTR ERV1 -82 628 1 246 224 53 0 chr1 165680846 165680922 -76983431 + L1MC4 LINE L1 6624 6703 -1339 2153 146 9 81 chr1 165680938 165681371 -76982982 - MER57A LTR ERV1 -1 402 1 703 142 22 22 chr1 165681379 165681513 -76982840 - MER57A-int LTR ERV1 -47 7490 7357 1670 172 69 0 chr1 165681536 165681827 -76982526 - AluSx SINE Alu -1 311 1 296 102 41 0 chr1 165681927 165681976 -76982377 - LTR54B LTR ERV1 -368 130 80 657 201 13 39 chr1 165681991 165682021 -76982332 - MER57A-int LTR ERV1 -1563 5974 5945 683 34 0 0 chr1 165682021 165682171 -76982182 - L1PA3 LINE L1 0 6155 6068 657 201 13 39 chr1 165682171 165682294 -76982059 - MER57A-int LTR ERV1 -1592 5945 5825 742 184 20 0 chr1 165682621 165682768 -76981585 - MER57A-int LTR ERV1 -1716 5821 5672 4340 205 73 69 chr1 165682780 165683235 -76981118 - MER57A-int LTR ERV1 -1498 3438 2986 1012 105 0 0 chr1 165683235 165683368 -76980985 + FLAM_C SINE Alu 1 133 0 4340 205 73 69 chr1 165683368 165684745 -76979608 - MER57A-int LTR ERV1 -1950 2986 1753 376 262 29 0 chr1 165684899 165685002 -76979351 - MER57A-int LTR ERV1 -2876 3455 3350 3798 135 47 37 chr1 165685081 165685785 -76978568 - MER50 LTR ERV1 -23 711 1 641 167 66 81 chr1 165685890 165686088 -76978265 - MER57A-int LTR ERV1 -3059 3272 3078 300 191 0 56 chr1 165686105 165686194 -76978159 - MER57A-int LTR ERV1 -3732 1391 1308 272 316 0 0 chr1 165686221 165686300 -76978053 - MER57A-int LTR ERV1 -4651 1947 1869 780 247 58 36 chr1 165686308 165686583 -76977770 - MER34C LTR ERV1 -147 438 158 434 230 0 91 chr1 165686583 165686748 -76977605 - MER57A-int LTR ERV1 -4132 991 842 3451 193 20 60 chr1 165686860 165687726 -76976627 - MER57A-int LTR ERV1 -6706 831 1 2103 156 14 59 chr1 165687726 165688148 -76976205 - MER57A LTR ERV1 0 403 1 2045 143 3 0 chr1 165689494 165689804 -76974549 + AluSx SINE Alu 1 311 0 763 126 7 84 chr1 165689815 165689958 -76974395 - FLAM_C SINE Alu -1 132 1 350 138 50 0 chr1 165692357 165692437 -76971916 - MER67C LTR ERV1 -2 708 625 27 0 0 26 chr1 165692437 165692459 -76971894 + AT_rich Low_complexity Low_complexity 1 23 -14 2266 97 14 0 chr1 165692459 165692747 -76971606 - AluSp SINE Alu -21 292 1 27 0 0 26 chr1 165692747 165692762 -76971591 + AT_rich Low_complexity Low_complexity 23 37 0 812 169 0 0 chr1 165692769 165692887 -76971466 - FLAM_C SINE Alu -25 118 1 2541 141 64 17 chr1 165692926 165693408 -76970945 - MER67C LTR ERV1 -82 628 124 582 261 8 0 chr1 165693526 165693656 -76970697 - FLAM_A SINE Alu -2 131 1 270 355 61 35 chr1 165693744 165693975 -76970378 - L3b LINE CR1 -11 1572 1336 2368 83 3 7 chr1 165694225 165694525 -76969828 - AluSq SINE Alu -14 299 1 437 344 33 42 chr1 165694741 165694956 -76969397 + L3 LINE CR1 1312 1524 -53 2670 85 6 0 chr1 165695639 165695992 -76968361 + THE1A LTR MaLR 1 355 0 2383 110 8 16 chr1 165696079 165696460 -76967893 + LTR49 LTR ERV1 1 378 -217 278 197 0 30 chr1 165696457 165696523 -76967830 - MSTB1 LTR MaLR -13 419 356 * 1609 177 74 11 chr1 165696823 165697173 -76967180 - MSTB1 LTR MaLR -60 372 1 1264 121 26 13 chr1 165697173 165697404 -76966949 + LTR49 LTR ERV1 362 595 0 1876 150 56 6 chr1 165697406 165697745 -76966608 + LTR49-int LTR ERV1 1 356 -5975 3368 161 32 56 chr1 165697848 165698055 -76966298 + LTR49-int LTR ERV1 361 572 -5374 2302 78 0 53 chr1 165698055 165698375 -76965978 - AluSg SINE Alu -7 303 1 3368 161 32 56 chr1 165698375 165698917 -76965436 + LTR49-int LTR ERV1 572 1458 -4488 650 108 0 0 chr1 165699102 165699204 -76965149 + LTR49-int LTR ERV1 1054 1155 -5176 269 246 58 0 chr1 165699224 165699293 -76965060 + tRNA-Glu-GAG tRNA tRNA 3 75 0 400 133 114 9 chr1 165699293 165699398 -76964955 + LTR49-int LTR ERV1 1283 1398 -4933 4139 204 47 68 chr1 165699488 165700249 -76964104 + LTR49-int LTR ERV1 1354 2082 -4249 207 88 0 0 chr1 165700249 165700283 -76964070 + (TGG)n Simple_repeat Simple_repeat 1 34 0 4139 204 47 68 chr1 165700283 165700735 -76963618 + LTR49-int LTR ERV1 2082 2542 -3789 728 134 15 8 chr1 165700735 165700869 -76963484 - MSTB1 LTR MaLR 0 432 298 2001 156 38 39 chr1 165700869 165701420 -76962933 - MLT2A2 LTR ERVL 0 554 1 1196 200 43 43 chr1 165701422 165701463 -76962890 - MSTB1 LTR MaLR -132 300 260 2220 117 13 3 chr1 165701463 165701770 -76962583 + AluSx SINE Alu 1 310 -2 1196 200 43 43 chr1 165701770 165702028 -76962325 - MSTB1 LTR MaLR -171 261 1 5128 176 56 71 chr1 165702030 165703560 -76960793 + LTR49-int LTR ERV1 2540 4046 -2285 453 145 15 1 chr1 165703564 165703826 -76960527 + AluJo SINE Alu 6 304 -8 306 169 65 0 chr1 165703826 165703903 -76960450 - LTR49-int LTR ERV1 -2210 4121 4040 1653 172 37 10 chr1 165703903 165704200 -76960153 - AluJb SINE Alu -7 305 1 9659 154 47 38 chr1 165704220 165704916 -76959437 + LTR49-int LTR ERV1 4108 4796 -1535 2314 107 3 0 chr1 165704916 165705216 -76959137 + AluSp SINE Alu 2 302 -11 9659 154 47 38 chr1 165705216 165705567 -76958786 + LTR49-int LTR ERV1 4796 5142 -1189 2171 136 0 0 chr1 165705567 165705861 -76958492 - AluSg SINE Alu -16 294 1 2262 102 116 0 chr1 165705868 165706231 -76958122 - L1PA10 LINE L1 0 6168 5764 9659 154 47 38 chr1 165706231 165707377 -76956976 + LTR49-int LTR ERV1 5147 6329 -2 2185 96 14 41 chr1 165707395 165707604 -76956749 + LTR49 LTR ERV1 1 197 -398 2090 131 0 3 chr1 165707604 165707902 -76956451 - AluSg SINE Alu -13 297 1 2185 96 14 41 chr1 165707902 165708057 -76956296 + LTR49 LTR ERV1 197 355 -240 886 86 16 8 chr1 165708095 165708223 -76956130 + L1PA7 LINE L1 6025 6153 -1 207 0 0 0 chr1 165708271 165708294 -76956059 + (T)n Simple_repeat Simple_repeat 1 23 0 1582 91 50 0 chr1 165708634 165708853 -76955500 - MER30 DNA MER1_type 0 230 1 2040 159 0 13 chr1 165709315 165709629 -76954724 + AluSx SINE Alu 1 310 -2 1371 186 26 15 chr1 165709634 165709898 -76954455 + AluSx SINE Alu 41 307 -5 1606 167 3 66 chr1 165709926 165710243 -76954110 - AluJb SINE Alu -11 301 5 449 219 9 61 chr1 165710553 165710667 -76953686 + MER58B DNA MER1_type 1 108 -233 2687 195 71 38 chr1 165710713 165711375 -76952978 + MER21B LTR ERV1 1 684 -179 1822 214 130 23 chr1 165711384 165712039 -76952314 + MER50 LTR ERV1 10 734 0 523 179 11 0 chr1 165712039 165712133 -76952220 + MER21B LTR ERV1 684 778 -85 810 182 0 14 chr1 165712154 165712302 -76952051 + MER58B DNA MER1_type 195 340 -1 2304 63 6 48 chr1 165712344 165712660 -76951693 - AluY SINE Alu -8 303 1 23 0 0 0 chr1 165712670 165712693 -76951660 + AT_rich Low_complexity Low_complexity 1 23 0 1600 169 24 21 chr1 165712694 165712984 -76951369 - AluSx SINE Alu -21 291 1 1719 161 57 4 chr1 165713182 165713461 -76950892 + AluJb SINE Alu 1 294 -18 21 0 0 0 chr1 165714027 165714048 -76950305 + AT_rich Low_complexity Low_complexity 1 21 0 1205 180 107 18 chr1 165714049 165714377 -76949976 - L1MC3 LINE L1 -9 7776 7420 483 108 0 0 chr1 165714419 165714484 -76949869 - MER1B DNA MER1_type -1 332 268 1812 144 4 0 chr1 165714565 165714842 -76949511 - MER1B DNA MER1_type -61 278 1 2296 150 72 13 chr1 165714853 165715326 -76949027 - L1MC3 LINE L1 -374 7411 6911 347 339 48 16 chr1 165715512 165715636 -76948717 + L2 LINE L2 3137 3264 -8 832 175 160 16 chr1 165716526 165716720 -76947633 + AluJo SINE Alu 69 290 -22 688 179 8 22 chr1 165716732 165716866 -76947487 + FLAM_C SINE Alu 1 132 -1 228 100 0 0 chr1 165717515 165717555 -76946798 + (A)n Simple_repeat Simple_repeat 1 40 0 910 236 7 65 chr1 165717571 165717776 -76946577 + MER46C DNA MER2_type 79 265 -73 1988 120 0 4 chr1 165717776 165718043 -76946310 - AluSq SINE Alu -47 266 1 910 236 7 65 chr1 165718043 165718113 -76946240 + MER46C DNA MER2_type 265 338 0 191 36 36 0 chr1 165718200 165718228 -76946125 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2291 70 7 27 chr1 165718276 165718577 -76945776 - AluY SINE Alu -16 295 1 757 247 149 0 chr1 165718744 165718938 -76945415 + MER58A DNA MER1_type 2 224 0 2479 63 7 0 chr1 165721948 165722247 -76942106 - AluSp SINE Alu -12 301 1 2065 113 3 26 chr1 165723460 165723770 -76940583 + AluSc SINE Alu 1 303 -6 2145 92 0 11 chr1 165725546 165725856 -76938497 + AluSp SINE Alu 6 312 0 225 0 0 0 chr1 165726015 165726040 -76938313 + (TA)n Simple_repeat Simple_repeat 2 26 0 3043 261 99 16 chr1 165726263 165726717 -76937636 + L1ME1 LINE L1 1082 1497 -4718 2320 90 0 0 chr1 165726717 165727017 -76937336 + AluSq SINE Alu 1 300 -13 3043 261 99 16 chr1 165727017 165727208 -76937145 + L1ME1 LINE L1 1497 1671 -4544 1711 166 0 27 chr1 165727208 165727504 -76936849 + AluJo SINE Alu 5 292 -20 3043 261 99 16 chr1 165727504 165728053 -76936300 + L1ME1 LINE L1 1671 2173 -4042 878 130 8 0 chr1 165728053 165728184 -76936169 + AluJ SINE Alu 1 132 -170 3043 261 99 16 chr1 165728184 165729277 -76935076 + L1ME1 LINE L1 2173 3520 -2695 3854 237 78 42 chr1 165729283 165729546 -76934807 + L1ME1 LINE L1 3669 3921 -2294 1615 174 34 7 chr1 165729546 165729839 -76934514 + AluJb SINE Alu 1 301 -11 3854 237 78 42 chr1 165729839 165730344 -76934009 + L1ME1 LINE L1 3921 4406 -1809 315 0 0 0 chr1 165730344 165730379 -76933974 + (CA)n Simple_repeat Simple_repeat 1 35 0 3854 237 78 42 chr1 165730379 165731117 -76933236 + L1ME1 LINE L1 4406 5230 -985 326 267 42 58 chr1 165731112 165731232 -76933121 + L1ME1 LINE L1 5504 5621 -614 * 475 235 0 0 chr1 165731234 165731319 -76933034 + MER7A DNA MER2_type 2 84 -262 * 3960 104 54 13 chr1 165731301 165732171 -76932182 + Tigger3b DNA MER2_type 278 1232 0 2047 252 41 15 chr1 165732174 165732765 -76931588 + L1ME1 LINE L1 5624 6229 -6 1902 302 54 19 chr1 165733276 165734191 -76930162 + L1M4 LINE L1 3354 4300 -1846 391 345 130 9 chr1 165734787 165735010 -76929343 + MIR SINE MIR 1 250 -12 2025 229 55 12 chr1 165735369 165735863 -76928490 + MLT2B2 LTR ERVL 1 515 0 223 366 79 10 chr1 165736014 165736115 -76928238 - L2 LINE L2 -40 3232 3125 1105 164 0 0 chr1 165736118 165736295 -76928058 + AluJ SINE Alu 131 307 -5 829 221 95 118 chr1 165736704 165737094 -76927259 + MER34B LTR ERV1 1 381 -184 548 183 33 25 chr1 165737175 165737295 -76927058 + MER34 LTR ERV1 417 537 -5 605 156 0 43 chr1 165788815 165789001 -76875352 + CT-rich Low_complexity Low_complexity 3 180 0 185 243 0 0 chr1 165789199 165789236 -76875117 - L2 LINE L2 -8 3305 3269 425 287 8 25 chr1 165789564 165789686 -76874667 - MIR SINE MIR -61 201 82 209 295 90 13 chr1 165789685 165789763 -76874590 - L2 LINE L2 0 3313 3230 * 1194 173 56 53 chr1 165790603 165790926 -76873427 - MER33 DNA MER1_type 0 324 1 29 0 0 0 chr1 165790970 165790999 -76873354 + AT_rich Low_complexity Low_complexity 1 29 0 383 297 8 29 chr1 165791033 165791449 -76872904 + CT-rich Low_complexity Low_complexity 1 407 0 2756 186 77 40 chr1 165791576 165792295 -76872058 - L1ME1 LINE L1 -84 6082 5294 2287 95 7 0 chr1 165792295 165792589 -76871764 - AluSc SINE Alu -13 296 1 2756 186 77 40 chr1 165792589 165793122 -76871231 - L1ME1 LINE L1 -872 5294 4782 489 265 118 28 chr1 165793534 165793706 -76870647 - MLT1J LTR MaLR -277 234 38 1422 229 23 50 chr1 165793706 165794090 -76870263 - MLT1A2 LTR MaLR 0 374 1 489 265 118 28 chr1 165794090 165794128 -76870225 - MLT1J LTR MaLR -473 38 5 2147 116 3 16 chr1 165794485 165794795 -76869558 + AluSx SINE Alu 1 306 -6 234 271 232 46 chr1 165794993 165795144 -76869209 + MIR3 SINE MIR 30 208 0 286 200 93 0 chr1 165795260 165795335 -76869018 - MLT1G LTR MaLR -26 564 483 1734 184 27 7 chr1 165795335 165795628 -76868725 + AluJb SINE Alu 1 299 -13 922 164 9 103 chr1 165795633 165795847 -76868506 + AluJo SINE Alu 87 280 -32 2394 85 7 0 chr1 165795847 165796152 -76868201 - AluSp SINE Alu -6 307 1 626 276 65 0 chr1 165796161 165796331 -76868022 - MLT1G LTR MaLR -217 373 193 34 55 0 0 chr1 165796351 165796406 -76867947 + AT_rich Low_complexity Low_complexity 1 55 0 1881 150 20 13 chr1 165796406 165796706 -76867647 + AluJo SINE Alu 1 302 -10 474 246 227 30 chr1 165796789 165796992 -76867361 - MIR SINE MIR -6 256 14 2114 142 8 50 chr1 165796992 165797372 -76866981 - THE1B LTR MaLR 0 364 1 2025 138 2 79 chr1 165797377 165797754 -76866599 + MLT1B LTR MaLR 1 344 -46 2271 99 0 7 chr1 165797754 165798057 -76866296 - AluSg SINE Alu -9 301 1 2025 138 2 79 chr1 165798057 165798099 -76866254 + MLT1B LTR MaLR 344 388 -2 732 267 65 49 chr1 165799586 165799726 -76864627 + MIR SINE MIR 12 159 -103 1380 193 104 0 chr1 165799726 165799996 -76864357 + AluJo SINE Alu 1 298 -14 732 267 65 49 chr1 165799996 165800102 -76864251 + MIR SINE MIR 159 262 0 2305 101 13 0 chr1 165800435 165800743 -76863610 + AluSx SINE Alu 1 312 0 2291 117 0 0 chr1 165800941 165801241 -76863112 + AluSc SINE Alu 1 300 -9 707 258 62 107 chr1 165801633 165801918 -76862435 - L2 LINE L2 -91 3222 2977 2326 40 57 24 chr1 165801918 165802214 -76862139 + AluY SINE Alu 1 306 -5 707 258 62 107 chr1 165802214 165802414 -76861939 - L2 LINE L2 -336 2977 2770 811 152 117 6 chr1 165802707 165802878 -76861475 - AluSc SINE Alu 0 309 120 300 308 80 40 chr1 165803079 165803627 -76860726 - L1M4 LINE L1 -1458 4688 4109 2354 105 0 0 chr1 165803627 165803921 -76860432 + AluSg SINE Alu 1 294 -16 300 308 80 40 chr1 165803921 165804019 -76860334 - L1M4 LINE L1 -2037 4109 4016 263 157 0 0 chr1 165804081 165804132 -76860221 + MADE1 DNA Mariner 29 79 -1 778 170 0 22 chr1 165804229 165804364 -76859989 - FLAM_C SINE Alu -1 132 1 910 224 0 0 chr1 165804388 165804549 -76859804 - FAM SINE Alu -13 162 2 23 33 0 0 chr1 165804562 165804592 -76859761 + AT_rich Low_complexity Low_complexity 1 30 0 280 341 41 80 chr1 165804821 165805271 -76859082 + L2 LINE L2 2724 3214 -58 443 318 68 0 chr1 165805590 165805738 -76858615 - L2 LINE L2 0 3272 3115 1908 54 4 0 chr1 165805819 165806061 -76858292 + L1PA5 LINE L1 5911 6153 -1 1691 153 7 24 chr1 165806295 165806582 -76857771 + AluJo SINE Alu 1 282 -30 414 0 0 0 chr1 165806588 165806634 -76857719 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1884 170 7 0 chr1 165806683 165806983 -76857370 - AluJb SINE Alu -10 302 1 599 224 0 17 chr1 165807039 165807155 -76857198 - FLAM_A SINE Alu -18 115 2 1631 177 42 7 chr1 165807162 165807450 -76856903 - AluJb SINE Alu -13 299 2 530 233 72 14 chr1 165807478 165807701 -76856652 - L1MC5 LINE L1 -60 7901 7666 22 0 0 0 chr1 165808443 165808465 -76855888 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 165808777 165808806 -76855547 + AT_rich Low_complexity Low_complexity 1 29 0 222 62 0 0 chr1 165808817 165808849 -76855504 + (T)n Simple_repeat Simple_repeat 1 32 0 1523 224 21 13 chr1 165809137 165809526 -76854827 - L1MC4 LINE L1 -413 7629 7238 * 1598 205 37 11 chr1 165809521 165809904 -76854449 - L1MC4 LINE L1 -808 7081 6581 609 80 0 0 chr1 165809904 165809992 -76854361 + (CATA)n Simple_repeat Simple_repeat 4 91 0 1598 205 37 11 chr1 165809992 165810055 -76854298 - L1MC4 LINE L1 -1308 6581 6521 935 211 22 5 chr1 165810372 165810557 -76853796 + MER5A DNA MER1_type 1 188 -1 2315 101 7 0 chr1 165810914 165811221 -76853132 - AluSx SINE Alu -3 309 1 1462 202 3 17 chr1 165811339 165811626 -76852727 + AluJb SINE Alu 1 283 -29 211 231 0 0 chr1 165811630 165811669 -76852684 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 2297 110 3 0 chr1 165812534 165812844 -76851509 + AluSq SINE Alu 1 311 -2 677 226 0 22 chr1 165813018 165813155 -76851198 + AluJo SINE Alu 2 135 -177 1559 172 41 21 chr1 165813155 165813445 -76850908 + AluJb SINE Alu 1 296 -16 2323 104 3 0 chr1 165813806 165814113 -76850240 - AluSx SINE Alu -4 308 1 2251 110 0 3 chr1 165814121 165814420 -76849933 - AluSq SINE Alu -15 298 1 21 0 0 0 chr1 165814449 165814470 -76849883 + AT_rich Low_complexity Low_complexity 1 21 0 2067 86 3 58 chr1 165814516 165814842 -76849511 - AluSg SINE Alu 0 313 4 2051 130 40 7 chr1 165816108 165816409 -76847944 + AluSx SINE Alu 1 311 -1 1840 157 0 43 chr1 165817081 165817412 -76846941 - AluJo SINE Alu 0 318 1 348 24 0 0 chr1 165818514 165818555 -76845798 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr1 165818710 165818731 -76845622 + AT_rich Low_complexity Low_complexity 1 21 0 237 310 60 50 chr1 165818731 165818831 -76845522 + L2 LINE L2 3154 3254 -18 1151 202 48 20 chr1 165819298 165819550 -76844803 + MIR SINE MIR 1 259 -3 191 329 164 0 chr1 165819748 165819821 -76844532 + L2 LINE L2 3156 3240 -32 568 245 169 65 chr1 165819891 165820006 -76844347 + L2 LINE L2 2800 2902 -411 501 193 228 0 chr1 165820006 165820151 -76844202 + MER45A DNA AcHobo 1 178 0 568 245 169 65 chr1 165820151 165820388 -76843965 + L2 LINE L2 2902 3210 -103 2234 87 3 0 chr1 165820388 165820676 -76843677 + AluSg SINE Alu 1 289 -21 568 245 169 65 chr1 165820676 165820792 -76843561 + L2 LINE L2 3210 3313 0 2146 117 7 19 chr1 165820823 165821130 -76843223 + AluSx SINE Alu 1 303 -9 1929 162 23 7 chr1 165821196 165821499 -76842854 + AluJb SINE Alu 1 308 -4 708 192 8 0 chr1 165823193 165823318 -76841035 + FLAM_A SINE Alu 1 126 -7 2384 93 3 0 chr1 165823453 165823753 -76840600 + AluSq SINE Alu 1 301 -12 438 204 0 0 chr1 165823753 165823846 -76840507 + (TATG)n Simple_repeat Simple_repeat 4 96 0 231 257 0 43 chr1 165823961 165824031 -76840322 - MIR SINE MIR -150 112 46 1026 71 0 104 chr1 165824076 165824230 -76840123 - AluSq/x SINE Alu -174 138 1 2189 125 0 10 chr1 165824242 165824554 -76839799 - AluSx SINE Alu -3 309 1 1380 121 4 48 chr1 165824959 165825073 -76839280 + L1MA2 LINE L1 6043 6160 -144 1864 126 48 10 chr1 165825073 165825367 -76838986 + AluJo SINE Alu 1 305 -7 1380 121 4 48 chr1 165825367 165825524 -76838829 + L1MA2 LINE L1 6160 6302 -2 217 264 28 0 chr1 165825608 165825680 -76838673 - L2 LINE L2 -373 2941 2868 913 326 115 19 chr1 165825964 165826540 -76837813 - L2 LINE L2 -467 2847 2217 432 186 310 14 chr1 165828104 165828249 -76836104 + MIR SINE MIR 2 189 -73 1894 145 0 36 chr1 165829054 165829358 -76834995 + AluJo SINE Alu 1 293 -19 1878 178 3 0 chr1 165829420 165829724 -76834629 - AluJb SINE Alu -7 305 1 755 141 8 8 chr1 165829749 165829870 -76834483 + AluSx SINE Alu 35 155 -157 1977 41 11 11 chr1 165830590 165830857 -76833496 + LTR22A LTR ERVK 1 267 -191 228 271 84 65 chr1 165832445 165832552 -76831801 - L2 LINE L2 -8 3264 3156 849 133 0 22 chr1 165832634 165832769 -76831584 + FLAM_C SINE Alu 1 132 -1 25 0 0 0 chr1 165832882 165832907 -76831446 + AT_rich Low_complexity Low_complexity 1 25 0 473 276 24 8 chr1 165832909 165833032 -76831321 - MIR SINE MIR -29 233 109 823 162 26 13 chr1 165833032 165833186 -76831167 - FRAM SINE Alu -10 166 11 2262 112 0 3 chr1 165833470 165833783 -76830570 - AluSx SINE Alu 0 312 1 23 33 0 0 chr1 165833807 165833837 -76830516 + AT_rich Low_complexity Low_complexity 1 30 0 928 207 0 0 chr1 165833971 165834150 -76830203 + MER58A DNA MER1_type 45 223 -1 751 173 0 23 chr1 165834417 165834550 -76829803 - FLAM_A SINE Alu -3 130 1 213 39 0 0 chr1 165834558 165834584 -76829769 + (T)n Simple_repeat Simple_repeat 1 26 0 301 300 215 5 chr1 165835599 165835799 -76828554 + MIR SINE MIR 18 259 -3 651 161 9 2 chr1 165837355 165837483 -76826870 + L1MB7 LINE L1 6047 6166 0 214 235 15 29 chr1 165837707 165837775 -76826578 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 2291 113 0 3 chr1 165838397 165838708 -76825645 + AluSx SINE Alu 1 310 -2 2172 91 0 60 chr1 165838709 165839027 -76825326 + AluY SINE Alu 1 299 -12 2269 108 0 3 chr1 165839650 165839947 -76824406 + AluSx SINE Alu 1 296 -16 1004 259 0 0 chr1 165840488 165840712 -76823641 + MER58A DNA MER1_type 1 224 0 1828 163 0 49 chr1 165843989 165844165 -76820188 - AluJo SINE Alu -3 309 155 2076 133 10 26 chr1 165844165 165844473 -76819880 - AluSx SINE Alu -9 303 1 1828 163 0 49 chr1 165844473 165844621 -76819732 - AluJo SINE Alu -157 155 1 245 50 0 25 chr1 165845354 165845394 -76818959 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 368 254 319 6 chr1 165846665 165846834 -76817519 + MIR SINE MIR 33 254 -8 442 301 19 26 chr1 165847377 165847533 -76816820 - MIR SINE MIR 0 262 108 229 225 78 78 chr1 165847550 165847679 -76816674 + L1ME4a LINE L1 5634 5762 -359 22 70 0 0 chr1 165847731 165847774 -76816579 + AT_rich Low_complexity Low_complexity 1 43 0 322 274 29 0 chr1 165847863 165847965 -76816388 + L1ME4a LINE L1 5948 6052 -69 32 81 0 0 chr1 165848085 165848159 -76816194 + AT_rich Low_complexity Low_complexity 1 74 0 2280 106 0 3 chr1 165849410 165849713 -76814640 + AluSx SINE Alu 6 307 -5 2170 128 7 0 chr1 165850215 165850519 -76813834 - AluSx SINE Alu -6 306 1 213 208 0 38 chr1 165850723 165850776 -76813577 + L3 LINE CR1 1313 1363 -214 2556 58 0 7 chr1 165850814 165851124 -76813229 - AluY SINE Alu -3 308 1 515 315 116 3 chr1 165851936 165852228 -76812125 - L2 LINE L2 -5 3308 2984 290 333 50 50 chr1 165852572 165852713 -76811640 + MIR SINE MIR 19 159 -49 357 289 49 35 chr1 165854418 165854560 -76809793 - MIR SINE MIR -47 215 72 1551 149 0 24 chr1 165855791 165856040 -76808313 + AluJo SINE Alu 61 303 -9 29 0 0 0 chr1 165856961 165856990 -76807363 + AT_rich Low_complexity Low_complexity 1 29 0 220 259 72 86 chr1 165857447 165857586 -76806767 - L2 LINE L2 -463 2851 2715 919 117 0 0 chr1 165858388 165858516 -76805837 - AluJb SINE Alu 0 312 185 440 302 124 22 chr1 165858675 165858900 -76805453 - MIR SINE MIR -13 249 2 1710 84 21 4 chr1 165858976 165859213 -76805140 - L1PA7 LINE L1 -3 6151 5911 368 312 40 0 chr1 165860457 165860582 -76803771 + MIR SINE MIR 85 214 -48 189 0 0 0 chr1 165860892 165860913 -76803440 + (A)n Simple_repeat Simple_repeat 1 21 0 1203 63 0 17 chr1 165860913 165861088 -76803265 - L1PA8A LINE L1 -28 6103 5932 183 163 23 23 chr1 165861123 165861166 -76803187 - L2 LINE L2 0 3313 3271 2244 123 0 3 chr1 165861293 165861602 -76802751 + AluSx SINE Alu 1 308 -4 1672 145 7 47 chr1 165861946 165862243 -76802110 + AluJb SINE Alu 14 298 -14 372 282 121 8 chr1 165862259 165862383 -76801970 - MIR SINE MIR -122 140 3 252 286 125 21 chr1 165862557 165862749 -76801604 - MLT1J LTR MaLR 0 511 300 2119 109 0 38 chr1 165862769 165863082 -76801271 - AluSg SINE Alu -8 302 2 332 235 39 13 chr1 165863246 165863374 -76800979 - MLT1L LTR MaLR -380 131 1 2246 89 0 0 chr1 165864007 165864299 -76800054 - AluSc SINE Alu -17 292 1 2388 82 0 0 chr1 165864640 165864943 -76799410 - AluY SINE Alu -8 303 1 432 254 108 0 chr1 165865061 165865191 -76799162 + MIR SINE MIR 94 237 -25 37 39 0 0 chr1 165865842 165865893 -76798460 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr1 165868606 165868628 -76795725 + AT_rich Low_complexity Low_complexity 1 22 0 2189 105 0 17 chr1 165868991 165869285 -76795068 + AluSq SINE Alu 1 289 -24 1826 164 17 0 chr1 165872994 165873292 -76791061 - AluJb SINE Alu -9 303 1 543 200 9 0 chr1 165873358 165873463 -76790890 + U6 snRNA snRNA 1 106 -1 197 350 68 26 chr1 165873514 165873631 -76790722 - L2 LINE L2 -1355 1959 1838 838 173 189 90 chr1 165873660 165874047 -76790306 + LTR37B LTR ERV1 5 429 -39 878 305 66 26 chr1 165874051 165874511 -76789842 - L2 LINE L2 -258 3055 2576 994 274 101 34 chr1 165874512 165875019 -76789334 - MER34 LTR ERV1 -1 541 1 469 308 88 0 chr1 165875019 165875178 -76789175 - L2 LINE L2 -735 2579 2407 228 247 41 0 chr1 165875255 165875328 -76789025 - L1ME2 LINE L1 -19 6145 6070 345 261 62 25 chr1 165875368 165875529 -76788824 - L1ME3A LINE L1 -17 6153 5987 369 186 8 46 chr1 165875559 165875661 -76788692 - L1ME3A LINE L1 -246 5923 5818 296 267 12 0 chr1 165876700 165876786 -76787567 + (CGGGG)n Simple_repeat Simple_repeat 2 88 0 249 267 16 0 chr1 165877491 165877579 -76786774 + MIR SINE MIR 79 170 -38 3439 166 60 57 chr1 165878155 165878583 -76785770 - L1MB7 LINE L1 -20 6164 5730 2317 74 0 14 chr1 165878583 165878879 -76785474 - AluSx SINE Alu -20 292 1 3439 166 60 57 chr1 165878879 165879294 -76785059 - L1MB7 LINE L1 -454 5730 5318 2218 113 0 0 chr1 165879952 165880252 -76784101 - AluSp SINE Alu -13 300 1 21 57 0 0 chr1 165881792 165881827 -76782526 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr1 165881935 165881960 -76782393 + (TGG)n Simple_repeat Simple_repeat 1 25 0 255 255 85 21 chr1 165882027 165882121 -76782232 - L2 LINE L2 -8 3305 3206 714 69 49 0 chr1 165882725 165882827 -76781526 - L1MA1 LINE L1 0 6302 6196 398 355 8 0 chr1 165883315 165883436 -76780917 + MIR SINE MIR 20 141 -121 930 206 33 16 chr1 165884134 165884318 -76780035 + MER58A DNA MER1_type 37 223 -1 396 244 128 41 chr1 165884389 165884561 -76779792 + MIR SINE MIR 36 222 -40 292 296 271 22 chr1 165884908 165885372 -76778981 + L2 LINE L2 2731 3311 -2 259 298 48 29 chr1 165885749 165885853 -76778500 - MER5B DNA MER1_type -53 125 20 2468 66 10 3 chr1 165886197 165886499 -76777854 + AluSx SINE Alu 1 304 -8 917 148 56 12 chr1 165887799 165887961 -76776392 + FRAM SINE Alu 1 168 -8 254 218 236 12 chr1 165888462 165888627 -76775726 + L1MC4a LINE L1 5349 5550 -2258 1453 146 5 5 chr1 165888655 165888874 -76775479 + AluSq SINE Alu 1 219 -94 733 112 0 10 chr1 165888877 165888975 -76775378 + AluSg/x SINE Alu 189 285 -25 626 246 185 36 chr1 165888979 165889466 -76774887 + L1MC4a LINE L1 5575 6169 -1639 1533 221 39 17 chr1 165889492 165889849 -76774504 - MLT1A1 LTR MaLR 0 365 1 438 333 107 45 chr1 165889995 165890509 -76773844 + L2 LINE L2 2207 2752 -562 2166 109 0 38 chr1 165891762 165892082 -76772271 - AluSx SINE Alu -4 308 1 359 269 99 0 chr1 165892090 165892231 -76772122 - L1ME LINE L1 -365 5805 5651 2141 116 13 0 chr1 165892750 165893051 -76771302 + AluSp SINE Alu 2 306 -7 188 163 0 23 chr1 165893232 165893275 -76771078 - MIR SINE MIR -120 142 101 1892 160 13 53 chr1 165893478 165893852 -76770501 - L1MA9 LINE L1 -5 6307 5949 2057 108 35 3 chr1 165893891 165894179 -76770174 - AluSx SINE Alu -15 297 1 2243 116 0 0 chr1 165894677 165894970 -76769383 + AluSg SINE Alu 1 293 -17 256 306 159 0 chr1 165895705 165895862 -76768491 - L1MC4a LINE L1 -1658 6150 5969 648 261 70 59 chr1 165895886 165896113 -76768240 - L1MC4a LINE L1 -1925 5883 5651 2013 128 0 45 chr1 165896113 165896426 -76767927 - AluSx SINE Alu -10 302 4 648 261 70 59 chr1 165896426 165896470 -76767883 - L1MC4a LINE L1 -2157 5651 5609 1770 86 0 0 chr1 165897352 165897572 -76766781 - AluSp SINE Alu -23 290 71 21 0 0 0 chr1 165897582 165897603 -76766750 + AT_rich Low_complexity Low_complexity 1 21 0 2489 258 247 12 chr1 165897713 165898785 -76765568 + L2 LINE L2 191 1514 -1800 658 158 158 12 chr1 165898790 165898955 -76765398 + Charlie5 DNA MER1_type 6 194 -2418 1134 167 92 8 chr1 165898960 165899211 -76765142 + Charlie5 DNA MER1_type 2353 2624 0 211 176 162 44 chr1 165899211 165899279 -76765074 + L2 LINE L2 1507 1582 -1732 869 41 0 0 chr1 165899316 165899414 -76764939 - HY3 scRNA scRNA -3 98 1 1848 240 119 14 chr1 165899415 165900053 -76764300 + L2 LINE L2 1567 2271 -1043 673 240 0 26 chr1 165900962 165900973 -76763380 - MER21B LTR ERV1 -384 479 469 1969 129 28 3 chr1 165900973 165901259 -76763094 + AluSx SINE Alu 1 293 -19 673 240 0 26 chr1 165901259 165901401 -76762952 - MER21B LTR ERV1 -394 469 330 2805 153 24 8 chr1 165901433 165901930 -76762423 - L1MB3 LINE L1 0 6183 5679 198 324 140 52 chr1 165902274 165902410 -76761943 - L2 LINE L2 0 3272 3125 23 54 0 0 chr1 165902499 165902536 -76761817 + AT_rich Low_complexity Low_complexity 1 37 0 212 200 0 0 chr1 165902595 165902635 -76761718 - MIR SINE MIR -120 142 103 2097 68 0 8 chr1 165902666 165902929 -76761424 - AluY SINE Alu -7 304 44 342 156 50 6 chr1 165903100 165903260 -76761093 + (TA)n Simple_repeat Simple_repeat 2 168 0 254 133 52 22 chr1 165903272 165903407 -76760946 + (TA)n Simple_repeat Simple_repeat 1 139 0 235 148 39 55 chr1 165903510 165903692 -76760661 + (TA)n Simple_repeat Simple_repeat 2 180 0 346 122 56 38 chr1 165903706 165904151 -76760202 + (TA)n Simple_repeat Simple_repeat 1 452 0 1779 139 3 30 chr1 165904201 165904503 -76759850 - AluJb SINE Alu -14 298 5 319 338 107 29 chr1 165904507 165904788 -76759565 + L1MC/D LINE L1 4684 4986 -1160 1741 172 16 3 chr1 165904857 165905165 -76759188 - AluJb SINE Alu 0 312 1 781 287 105 6 chr1 165905219 165905550 -76758803 + L1MC/D LINE L1 5378 5742 -452 28 0 0 0 chr1 165905616 165905644 -76758709 + AT_rich Low_complexity Low_complexity 1 28 0 419 52 17 0 chr1 165906477 165906535 -76757818 + (CA)n Simple_repeat Simple_repeat 2 60 0 479 0 56 0 chr1 165906833 165906904 -76757449 + (CA)n Simple_repeat Simple_repeat 2 76 0 2749 161 16 26 chr1 165906996 165907488 -76756865 - MER45B DNA AcHobo 0 1040 554 1746 209 120 5 chr1 165907493 165907867 -76756486 - MER45B DNA AcHobo -606 434 18 1545 235 84 15 chr1 165908055 165908531 -76755822 - L2 LINE L2 0 3313 2805 2471 69 0 0 chr1 165909126 165909429 -76754924 - AluY SINE Alu -2 309 7 242 331 41 0 chr1 165910540 165910661 -76753692 + MER91A DNA MER1_type 3 128 -68 833 254 104 43 chr1 165910970 165911344 -76753009 - MLT1C LTR MaLR -65 402 6 221 190 103 17 chr1 165911703 165911761 -76752592 + L2 LINE L2 3210 3272 0 2257 104 0 16 chr1 165912078 165912385 -76751968 + AluSx SINE Alu 1 302 -10 2877 91 8 5 chr1 165914201 165914575 -76749778 - THE1C LTR MaLR 0 375 1 554 164 0 112 chr1 165914599 165914751 -76749602 + L2 LINE L2 3179 3313 0 1671 140 64 8 chr1 165915187 165915452 -76748901 - AluJb SINE Alu -32 280 1 616 260 125 34 chr1 165916082 165916290 -76748063 + MIR SINE MIR 26 252 -10 195 275 75 25 chr1 165916681 165916761 -76747592 + L2 LINE L2 3028 3111 -161 188 0 74 0 chr1 165918483 165918510 -76745843 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 5196 142 13 4 chr1 165918522 165918757 -76745596 - L1MA2 LINE L1 0 6304 6072 1914 133 50 0 chr1 165918757 165919035 -76745318 - AluSx SINE Alu -16 296 5 5196 142 13 4 chr1 165919035 165920600 -76743753 - L1MA2 LINE L1 -232 6072 4407 10430 157 18 67 chr1 165922685 165923328 -76741025 - L1MA2 LINE L1 -1726 4420 3747 2510 54 0 0 chr1 165923328 165923622 -76740731 - AluY SINE Alu -13 298 5 10430 157 18 67 chr1 165923622 165924183 -76740170 - L1MA2 LINE L1 -2399 3747 3160 2179 135 3 0 chr1 165924183 165924494 -76739859 - AluSx SINE Alu 0 312 1 10430 157 18 67 chr1 165924494 165925308 -76739045 - L1MA2 LINE L1 -2986 3160 2436 617 121 12 0 chr1 165925308 165925391 -76738962 - AluY SINE Alu -20 291 208 10430 157 18 67 chr1 165925391 165925562 -76738791 - L1MA2 LINE L1 -3710 2436 2258 330 338 190 20 chr1 165925668 165926062 -76738291 + L2 LINE L2 2031 2491 -823 493 256 72 22 chr1 165926062 165926242 -76738111 + L2 LINE L2 2346 2534 -780 375 365 33 47 chr1 165926508 165926722 -76737631 - L2 LINE L2 -96 3176 2966 397 286 56 3 chr1 165926828 165926987 -76737366 - HAL1b LINE L1 -1 6120 1193 186 366 0 0 chr1 165926993 165927064 -76737289 + L2 LINE L2 2687 2757 -557 314 293 47 19 chr1 165928204 165928310 -76736043 - L2 LINE L2 -18 3254 3146 800 243 57 19 chr1 165928844 165929054 -76735299 - MIR SINE MIR -5 257 40 444 233 51 86 chr1 165929586 165929870 -76734483 + L1MB7 LINE L1 4165 4545 -1601 1112 201 0 0 chr1 165929893 165930092 -76734261 - MLT1B LTR MaLR 0 390 192 2009 245 107 4 chr1 165930179 165930714 -76733639 + MLT1E LTR MaLR 4 593 0 1644 173 6 13 chr1 165930738 165931077 -76733276 + AluJb SINE Alu 1 312 0 599 224 241 6 chr1 165932169 165932339 -76732014 + MER63A DNA MER1_type 1 210 0 655 291 91 8 chr1 165932668 165932909 -76731444 - MLT1L LTR MaLR 0 615 355 331 283 0 10 chr1 165932974 165933073 -76731280 - MLT1L LTR MaLR -383 232 135 4726 57 0 0 chr1 165933481 165934063 -76730290 - L1PA7 LINE L1 -1 6153 5572 5050 79 4 0 chr1 165934063 165934925 -76729428 + L1PA7 LINE L1 4693 5556 -598 4821 159 51 14 chr1 165934947 165936220 -76728133 + L1MB7 LINE L1 4851 6168 -16 236 95 24 0 chr1 165936220 165936228 -76728125 + (TA)n Simple_repeat Simple_repeat 2 8 -36 2025 102 0 27 chr1 165936228 165936522 -76727831 + AluSq SINE Alu 1 286 -27 236 95 24 0 chr1 165936522 165936555 -76727798 + (TA)n Simple_repeat Simple_repeat 8 44 0 225 119 0 0 chr1 165936555 165936597 -76727756 - LTR66 LTR ERVL -171 439 398 256 191 13 0 chr1 165936599 165936673 -76727680 - L1MC4 LINE L1 -1339 6983 2006 527 251 0 105 chr1 165936829 165937020 -76727333 + MER5B DNA MER1_type 1 171 -7 668 207 55 12 chr1 165937114 165937278 -76727075 - L1ME1 LINE L1 -5 6161 5991 387 286 116 54 chr1 165937378 165937602 -76726751 + L1ME4a LINE L1 5883 6120 -1 396 0 0 0 chr1 165938067 165938111 -76726242 + (CA)n Simple_repeat Simple_repeat 1 44 0 528 273 23 41 chr1 165938647 165938819 -76725534 - MLT1L LTR MaLR -90 525 357 886 187 0 18 chr1 165938847 165939036 -76725317 - AluJ SINE Alu 0 312 127 848 154 8 0 chr1 165939083 165939213 -76725140 - AluJ SINE Alu -171 131 1 538 340 74 14 chr1 165939216 165939501 -76724852 - MLT1L LTR MaLR -312 303 2 1911 144 10 0 chr1 165940143 165940442 -76723911 + AluSx SINE Alu 1 302 -10 2141 117 0 0 chr1 165940916 165941224 -76723129 + AluSx SINE Alu 1 308 -4 491 232 149 23 chr1 165941429 165941605 -76722748 + MLT1J LTR MaLR 1 160 -290 5407 196 34 23 chr1 165941622 165942859 -76721494 + L1MC4 LINE L1 6793 8042 0 234 132 171 40 chr1 165942978 165943054 -76721299 + MLT1J LTR MaLR 375 460 -51 579 281 146 0 chr1 165943579 165943771 -76720582 - MIR SINE MIR -10 252 33 2336 89 0 3 chr1 165945458 165945771 -76718582 + AluSp SINE Alu 1 312 -1 241 300 0 0 chr1 165947044 165947104 -76717249 + MIR SINE MIR 203 262 0 198 0 0 0 chr1 165948435 165948457 -76715896 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 573 282 100 14 chr1 165948471 165948691 -76715662 + MIR SINE MIR 5 243 -19 274 200 12 50 chr1 165948748 165948828 -76715525 - L2 LINE L2 -40 3232 3156 263 276 19 67 chr1 165948819 165948924 -76715429 - L2 LINE L2 -1041 2273 2174 * 216 0 0 0 chr1 165949760 165949784 -76714569 + (T)n Simple_repeat Simple_repeat 1 24 0 1800 176 0 6 chr1 165951034 165951346 -76713007 + AluJb SINE Alu 1 310 -2 533 317 54 21 chr1 165951684 165951924 -76712429 + MIR SINE MIR 2 249 -13 1878 127 7 0 chr1 165952146 165952429 -76711924 - AluSx SINE Alu -27 285 1 201 301 11 43 chr1 165953482 165953575 -76710778 + MIR SINE MIR 29 118 -144 955 225 41 41 chr1 165953579 165953823 -76710530 + MIR SINE MIR 2 245 -17 312 116 0 0 chr1 165954679 165954722 -76709631 - L2 LINE L2 -4 3268 3226 424 278 77 23 chr1 165954988 165955139 -76709214 + MIR SINE MIR 18 188 -74 40 67 0 0 chr1 165955186 165955261 -76709092 + AT_rich Low_complexity Low_complexity 1 75 0 804 128 64 0 chr1 165956649 165956774 -76707579 - MER5A DNA MER1_type -56 133 1 201 39 0 0 chr1 165956792 165956818 -76707535 + (TG)n Simple_repeat Simple_repeat 1 26 0 571 259 157 23 chr1 165957626 165958049 -76706304 - LTR33 LTR ERVL 0 521 14 332 278 0 0 chr1 165958200 165958272 -76706081 - L2 LINE L2 0 3313 3242 2248 190 120 6 chr1 165958476 165958991 -76705362 - MER90 LTR ERV1 0 575 2 677 236 99 0 chr1 165961312 165961473 -76702880 - MER69A DNA AcHobo 0 177 1 955 191 0 0 chr1 165961679 165961847 -76702506 + AluJb SINE Alu 137 304 -8 2384 72 3 0 chr1 165962429 165962733 -76701620 + AluSp SINE Alu 4 308 -5 839 221 96 19 chr1 165963705 165963929 -76700424 - MIR SINE MIR -13 249 9 2866 93 79 5 chr1 165963929 165964360 -76699993 - MER4C LTR ERV1 0 465 3 3927 173 51 48 chr1 165964413 165965241 -76699112 - MER21B LTR ERV1 -22 841 12 244 185 123 15 chr1 165966419 165966484 -76697869 + MIR3 SINE MIR 127 198 -10 332 299 123 7 chr1 165966891 165967045 -76697308 - MIR SINE MIR -44 218 47 180 219 0 0 chr1 165968124 165968165 -76696188 + MIR SINE MIR 75 115 -93 1729 159 3 3 chr1 165968366 165968723 -76695630 - AluSx SINE Alu 0 357 1 27 0 0 0 chr1 165969376 165969403 -76694950 + AT_rich Low_complexity Low_complexity 1 27 0 190 179 0 0 chr1 165969486 165969514 -76694839 + MIR SINE MIR 49 76 -186 * 1348 294 77 44 chr1 165969509 165970081 -76694272 + L2 LINE L2 2336 2926 -388 397 311 8 8 chr1 165970206 165970325 -76694028 + L2 LINE L2 3194 3312 -1 531 317 137 22 chr1 165970328 165970738 -76693615 + L3 LINE CR1 1081 1537 -40 465 256 33 25 chr1 165971804 165971925 -76692428 + MIR SINE MIR 8 129 -133 1130 216 18 14 chr1 165972103 165972321 -76692032 - MER58A DNA MER1_type -5 219 1 2139 105 0 3 chr1 165972395 165972708 -76691645 - AluSx SINE Alu 0 312 1 199 328 34 107 chr1 165972818 165973080 -76691273 - L2 LINE L2 -41 3231 2989 428 300 50 6 chr1 165973527 165973687 -76690666 - MIR SINE MIR -47 215 49 374 234 3 72 chr1 165976136 165976489 -76687864 + GA-rich Low_complexity Low_complexity 1 328 0 881 173 101 0 chr1 165977004 165977172 -76687181 - MER20 DNA MER1_type -2 217 33 1239 121 14 28 chr1 165977695 165977910 -76686443 - L1MA4 LINE L1 -1 6299 6088 7100 113 65 92 chr1 165977912 165980309 -76684044 - pTR5 LTR ERV1 0 8399 504 906 179 49 42 chr1 165980305 165980664 -76683689 - HERV9 LTR ERV1 -835 7564 842 * 275 200 10 60 chr1 165980636 165980736 -76683617 - HERV9 LTR ERV1 -3428 4971 4877 * 24266 85 2 12 chr1 165980735 165983939 -76680414 - HERV9 LTR ERV1 -5227 3172 1 7419 139 33 147 chr1 165983942 165985856 -76678497 - pTR5 LTR ERV1 0 2438 743 8319 143 13 56 chr1 165985856 165985906 -76678447 - L1MA4 LINE L1 -208 7113 7062 2804 9 0 0 chr1 165985906 165986221 -76678132 - AluYb8 SINE Alu -3 315 1 8319 143 13 56 chr1 165986221 165987726 -76676627 - L1MA4 LINE L1 -259 7062 5683 2274 92 0 43 chr1 165987726 165987869 -76676484 + AluSx SINE Alu 1 149 -163 2258 100 0 0 chr1 165987869 165988168 -76676185 + AluSq SINE Alu 1 299 -14 2274 92 0 43 chr1 165988168 165988350 -76676003 + AluSx SINE Alu 149 312 0 8319 143 13 56 chr1 165988350 165989202 -76675151 - L1MA4 LINE L1 -1638 5683 4796 * 11913 185 30 35 chr1 165989173 165989439 -76674914 - L1MA4 LINE L1 -3709 3458 3192 2087 130 3 16 chr1 165989439 165989755 -76674598 - AluSx SINE Alu 0 312 1 11913 185 30 35 chr1 165989755 165992977 -76671376 - L1MA4 LINE L1 -3975 3192 2 330 198 52 95 chr1 165992982 165993098 -76671255 - MIR SINE MIR -59 203 93 21 0 0 0 chr1 165993098 165993119 -76671234 + AT_rich Low_complexity Low_complexity 1 21 0 192 160 0 100 chr1 165993267 165993317 -76671036 - MIR SINE MIR -146 116 72 611 293 32 11 chr1 165993335 165993523 -76670830 - MIR3 SINE MIR -12 196 5 194 138 0 0 chr1 165993524 165993553 -76670800 - MIR SINE MIR -142 66 38 259 333 65 0 chr1 165994844 165994952 -76669401 - L2 LINE L2 -4 3309 3195 227 361 41 25 chr1 165995014 165995136 -76669217 + L2 LINE L2 3148 3271 -1 198 65 43 22 chr1 165995789 165995835 -76668518 + A-rich Low_complexity Low_complexity 2 48 0 4257 84 0 4 chr1 165995864 165996420 -76667933 - MER41A LTR ERV1 0 554 1 2388 56 7 13 chr1 165996463 165996769 -76667584 - AluY SINE Alu -5 306 3 359 283 162 11 chr1 165997001 165997192 -76667161 - L2 LINE L2 -20 3293 3074 474 216 156 66 chr1 165997232 165997565 -76666788 - MLT1J LTR MaLR -32 479 50 978 170 34 44 chr1 165997579 165997629 -76666724 - MER3 DNA MER1_type 0 209 160 1603 167 63 0 chr1 165997629 165997916 -76666437 - AluJb SINE Alu -7 305 1 978 170 34 44 chr1 165997916 165998071 -76666282 - MER3 DNA MER1_type -49 160 6 1871 295 116 54 chr1 165998100 165998942 -76665411 - L2 LINE L2 -328 2985 2026 1513 169 32 21 chr1 165998942 165999247 -76665106 + AluJb SINE Alu 1 308 0 1871 295 116 54 chr1 165999247 165999779 -76664574 - L2 LINE L2 -1287 2026 1528 207 320 107 39 chr1 165999788 165999891 -76664462 + MIR3 SINE MIR 88 197 -11 216 0 0 0 chr1 166001206 166001230 -76663123 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2195 84 0 3 chr1 166001232 166001550 -76662803 + AluSp SINE Alu 1 317 0 321 264 33 28 chr1 166001613 166001735 -76662618 + CT-rich Low_complexity Low_complexity 3 213 0 283 277 11 32 chr1 166002334 166002428 -76661925 + CT-rich Low_complexity Low_complexity 6 97 0 346 335 164 11 chr1 166002428 166002795 -76661558 - HAL1 LINE L1 -1205 1302 880 180 0 0 0 chr1 166002797 166002817 -76661536 + (TC)n Simple_repeat Simple_repeat 1 20 0 2228 113 0 0 chr1 166002924 166003233 -76661120 - AluSg SINE Alu -1 309 1 542 244 92 0 chr1 166004065 166004196 -76660157 + L2 LINE L2 3167 3309 -4 3391 126 55 0 chr1 166005741 166006266 -76658087 - MER41C LTR ERV1 0 554 1 432 271 95 14 chr1 166006412 166006602 -76657751 - MIR3 SINE MIR -46 216 13 539 223 9 9 chr1 166007511 166007623 -76656730 - L2 LINE L2 -4 3309 3198 274 236 67 160 chr1 166008462 166008687 -76655666 - MIR SINE MIR -6 256 53 351 0 0 0 chr1 166008751 166008790 -76655563 + (CA)n Simple_repeat Simple_repeat 2 40 0 200 284 11 74 chr1 166009427 166009522 -76654831 - MIR SINE MIR -56 206 118 684 342 82 11 chr1 166010157 166010537 -76653816 + L2 LINE L2 1802 2208 -1106 332 268 76 52 chr1 166010650 166010934 -76653419 - MLT1J1 LTR MaLR -118 393 15 378 289 110 91 chr1 166010956 166011107 -76653246 + L2 LINE L2 2239 2386 -928 2139 103 30 0 chr1 166011107 166011408 -76652945 + AluSg SINE Alu 1 310 0 378 289 110 91 chr1 166011408 166011937 -76652416 + L2 LINE L2 2386 2932 -382 538 279 55 25 chr1 166011991 166012192 -76652161 + L2 LINE L2 3102 3308 -5 242 263 88 25 chr1 166012421 166012501 -76651852 + L2 LINE L2 3193 3277 -36 1043 275 92 30 chr1 166014085 166014197 -76650156 + Tigger8 DNA MER2_type 96 200 -466 261 0 0 0 chr1 166014197 166014226 -76650127 + (TG)n Simple_repeat Simple_repeat 1 29 0 1043 275 92 30 chr1 166014226 166014539 -76649814 + Tigger8 DNA MER2_type 200 547 -119 218 210 81 32 chr1 166015107 166015169 -76649184 + L2 LINE L2 3230 3294 -19 7370 129 33 8 chr1 166015567 166016767 -76647586 - Tigger3b DNA MER2_type -1 1230 1 21 36 0 0 chr1 166017526 166017554 -76646799 + AT_rich Low_complexity Low_complexity 1 28 0 260 234 156 0 chr1 166019216 166019293 -76645060 + L2 LINE L2 3168 3256 -16 846 199 10 46 chr1 166019320 166019442 -76644911 - MER5A DNA MER1_type 0 189 75 2274 104 0 0 chr1 166019442 166019749 -76644604 - AluSg SINE Alu -3 307 1 846 199 10 46 chr1 166019749 166019822 -76644531 - MER5A DNA MER1_type -114 75 1 363 270 97 81 chr1 166019900 166020085 -76644268 + MIR SINE MIR 20 207 -55 219 88 0 0 chr1 166020338 166020372 -76643981 + (TG)n Simple_repeat Simple_repeat 2 35 0 1628 195 68 31 chr1 166021697 166022051 -76642302 - MLT1A2 LTR MaLR -7 367 1 2011 148 0 0 chr1 166022104 166022409 -76641944 + AluJb SINE Alu 1 305 -7 189 0 0 0 chr1 166023668 166023689 -76640664 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 448 275 37 0 chr1 166025358 166025467 -76638886 - L2 LINE L2 0 3272 3160 482 269 170 20 chr1 166025496 166025749 -76638604 - L2 LINE L2 0 3313 3023 1056 157 9 61 chr1 166025827 166026056 -76638297 - AluJo SINE Alu -15 297 81 709 168 34 0 chr1 166026263 166026382 -76637971 - FRAM SINE Alu -55 121 1 305 225 0 50 chr1 166026385 166026465 -76637888 - L1MC3 LINE L1 -1139 6646 6571 527 207 9 9 chr1 166026491 166026602 -76637751 - FLAM_A SINE Alu -31 111 1 296 270 52 0 chr1 166026773 166026867 -76637486 - MER5A DNA MER1_type 0 178 65 186 388 29 6 chr1 166027920 166028090 -76636263 - MER5B DNA MER1_type -4 174 1 1099 61 7 0 chr1 166028759 166028906 -76635447 + AluSp/q SINE Alu 161 308 -5 339 264 218 18 chr1 166029869 166029979 -76634374 + MIR3 SINE MIR 14 145 -63 180 111 0 0 chr1 166030079 166030106 -76634247 + (T)n Simple_repeat Simple_repeat 1 27 0 458 211 45 64 chr1 166031069 166031225 -76633128 + MER103 DNA DNA 8 160 -6 329 257 97 42 chr1 166031249 166031393 -76632960 + MER5A DNA MER1_type 2 153 -36 435 317 41 0 chr1 166031400 166031523 -76632830 - L2 LINE L2 -1 3271 3144 385 328 0 0 chr1 166032069 166032194 -76632159 + L2 LINE L2 1931 2055 -1259 631 283 96 0 chr1 166032200 166032387 -76631966 - MIR SINE MIR 0 262 58 335 276 224 8 chr1 166032644 166032778 -76631575 + L2 LINE L2 3105 3267 -5 592 194 41 100 chr1 166033421 166033493 -76630860 + MER3 DNA MER1_type 43 118 -91 1902 147 19 7 chr1 166033493 166033800 -76630553 + AluSx SINE Alu 1 311 -1 592 194 41 100 chr1 166033800 166033897 -76630456 + MER3 DNA MER1_type 118 202 -7 186 103 0 0 chr1 166033912 166033941 -76630412 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr1 166034382 166034404 -76629949 + AT_rich Low_complexity Low_complexity 1 22 0 338 41 0 20 chr1 166037611 166037660 -76626693 + (TTC)n Simple_repeat Simple_repeat 3 50 0 180 393 62 0 chr1 166038134 166038246 -76626107 - L2 LINE L2 0 3272 3154 * 210 250 0 0 chr1 166038221 166038269 -76626084 + L2 LINE L2 3225 3272 0 323 316 10 10 chr1 166039117 166039215 -76625138 - MIR3 SINE MIR -29 179 82 679 233 170 24 chr1 166039742 166039948 -76624405 - MIR SINE MIR 0 262 27 447 291 16 24 chr1 166041081 166041208 -76623145 - L2 LINE L2 -2 3270 3145 375 265 219 7 chr1 166042048 166042199 -76622154 + MIR SINE MIR 29 211 -51 206 263 18 0 chr1 166042743 166042800 -76621553 + MIR SINE MIR 184 241 -21 384 296 40 20 chr1 166043137 166043295 -76621058 - MER5A DNA MER1_type -15 163 1 199 237 34 17 chr1 166043797 166043856 -76620497 - L2 LINE L2 -77 3195 3136 256 278 187 20 chr1 166044269 166044568 -76619785 - L2 LINE L2 -411 2903 2555 387 313 83 16 chr1 166045399 166045591 -76618762 - MIR3 SINE MIR -2 206 2 989 235 82 7 chr1 166045629 166045979 -76618374 + MLT1J2 LTR MaLR 42 450 0 739 213 104 38 chr1 166046111 166046322 -76618031 + MIR SINE MIR 4 228 -34 256 322 35 0 chr1 166046728 166046815 -76617538 - L2 LINE L2 -1 3271 3182 342 295 69 29 chr1 166046896 166047069 -76617284 - L2 LINE L2 -272 3041 2862 238 231 77 15 chr1 166047359 166047424 -76616929 + L2 LINE L2 3245 3313 0 405 273 173 71 chr1 166047445 166047907 -76616446 + L2 LINE L2 2468 2976 -338 272 298 24 12 chr1 166048146 166048230 -76616123 + L2 LINE L2 3136 3220 -52 195 42 0 0 chr1 166048236 166048260 -76616093 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 212 273 13 39 chr1 166048895 166048972 -76615381 + T-rich Low_complexity Low_complexity 5 79 0 1240 150 42 29 chr1 166049189 166049429 -76614924 + AluJo SINE Alu 64 306 -6 319 346 0 19 chr1 166049529 166049636 -76614717 + L2 LINE L2 3209 3313 0 563 286 57 40 chr1 166050180 166050428 -76613925 - MIR SINE MIR -3 259 8 360 214 149 83 chr1 166050783 166050951 -76613402 + MER102b DNA MER1_type 163 341 0 355 298 56 14 chr1 166051226 166051402 -76612951 + MIR SINE MIR 35 221 -41 234 91 0 0 chr1 166051630 166051663 -76612690 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 6822 34 1 0 chr1 166052080 166052870 -76611483 + L1PA5 LINE L1 5363 6153 -1 279 0 0 0 chr1 166053503 166053534 -76610819 + (T)n Simple_repeat Simple_repeat 1 31 0 371 248 138 46 chr1 166054383 166054513 -76609840 + MIR SINE MIR 6 146 -62 195 330 100 10 chr1 166055372 166055472 -76608881 - L2 LINE L2 -5 3308 3200 263 260 121 100 chr1 166055475 166055706 -76608647 + MIR SINE MIR 25 260 -2 188 310 55 90 chr1 166056609 166056754 -76607599 - MIR3 SINE MIR -62 146 7 276 305 92 46 chr1 166057169 166057300 -76607053 - MIR3 SINE MIR -68 140 4 22 0 0 0 chr1 166057684 166057706 -76606647 + AT_rich Low_complexity Low_complexity 1 22 0 1492 165 25 25 chr1 166057706 166057985 -76606368 - AluJo SINE Alu -33 279 1 214 167 0 24 chr1 166058251 166058293 -76606060 - L2 LINE L2 -2 3311 3271 799 264 14 19 chr1 166059486 166059698 -76604655 + MIR SINE MIR 46 256 -6 242 159 0 23 chr1 166059698 166059742 -76604611 + MER102b DNA MER1_type 288 330 0 295 268 24 0 chr1 166060075 166060157 -76604196 + L2 LINE L2 3228 3311 -2 228 295 83 3 chr1 166061462 166061535 -76602818 - L2 LINE L2 -17 3255 3193 258 308 70 76 chr1 166061596 166061781 -76602572 + L2 LINE L2 3019 3202 -70 456 279 18 55 chr1 166061822 166061875 -76602478 + MIR SINE MIR 102 155 -107 1059 149 109 41 chr1 166061875 166062096 -76602257 + MER46A DNA MER2_type 1 236 0 456 279 18 55 chr1 166062096 166062207 -76602146 + MIR SINE MIR 155 260 -2 3323 163 27 2 chr1 166062457 166063047 -76601306 + L1MB5 LINE L1 5570 6174 0 473 259 74 19 chr1 166065798 166065960 -76598393 + MIR3 SINE MIR 37 207 -1 467 270 88 27 chr1 166066158 166066306 -76598047 - MER91A DNA MER1_type -21 175 19 407 300 105 14 chr1 166066556 166066766 -76597587 - MIR SINE MIR -14 248 20 355 297 173 60 chr1 166067216 166067667 -76596686 + L2 LINE L2 2257 2758 -556 280 344 93 66 chr1 166067703 166068069 -76596284 + L2 LINE L2 2897 3272 0 255 61 0 0 chr1 166069651 166069684 -76594669 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 234 0 0 0 chr1 166070946 166070972 -76593381 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 641 245 41 13 chr1 166071219 166071405 -76592948 - MIR SINE MIR -56 206 13 24 32 0 0 chr1 166072150 166072181 -76592172 + AT_rich Low_complexity Low_complexity 1 31 0 2263 75 0 3 chr1 166073641 166073936 -76590417 - AluY SINE Alu -17 294 1 508 266 121 0 chr1 166074748 166074921 -76589432 - MIR SINE MIR -16 246 53 432 0 0 0 chr1 166075761 166075809 -76588544 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 196 358 73 18 chr1 166075814 166075923 -76588430 - L2 LINE L2 -15 3257 3143 198 71 0 0 chr1 166076190 166076218 -76588135 + (TC)n Simple_repeat Simple_repeat 1 28 0 439 333 41 14 chr1 166076555 166076702 -76587651 + L3 LINE CR1 1415 1565 -12 255 217 136 116 chr1 166076952 166077150 -76587203 + L2 LINE L2 2986 3187 -85 494 222 50 20 chr1 166078511 166078656 -76585697 + MIR SINE MIR 18 161 -66 2071 121 3 16 chr1 166078920 166079234 -76585119 + AluSx SINE Alu 1 310 -2 318 227 0 13 chr1 166079676 166079751 -76584602 - LTR67 LTR ERVL 0 557 484 1483 184 129 25 chr1 166079778 166080213 -76584140 + Charlie4a DNA MER1_type 29 508 0 1461 236 49 71 chr1 166080216 166080240 -76584113 - LTR67 LTR ERVL -73 484 461 983 209 11 6 chr1 166080240 166080417 -76583936 - MER45A DNA AcHobo 0 178 1 1461 236 49 71 chr1 166080417 166080884 -76583469 - LTR67 LTR ERVL -96 461 4 3285 125 33 50 chr1 166081701 166082012 -76582341 - MER4B LTR ERV1 0 779 464 2066 107 35 3 chr1 166082012 166082301 -76582052 + AluSq SINE Alu 3 300 -13 3285 125 33 50 chr1 166082301 166082609 -76581744 - MER4B LTR ERV1 -315 464 1 209 171 66 79 chr1 166082707 166082783 -76581570 - MIR SINE MIR -62 200 126 1143 176 18 59 chr1 166083004 166083276 -76581077 - L1MD3 LINE L1 -5 7990 7730 506 344 25 25 chr1 166084271 166084512 -76579841 - MIR SINE MIR -8 254 14 407 317 62 0 chr1 166084733 166084878 -76579475 + MIR3 SINE MIR 43 196 -12 1044 143 10 25 chr1 166085271 166085467 -76578886 + MER96B DNA MER1_type? 44 236 -181 429 285 176 10 chr1 166085467 166085660 -76578693 - MIR SINE MIR -33 229 5 411 325 7 13 chr1 166086399 166086553 -76577800 - MIR3 SINE MIR -7 201 49 380 359 100 50 chr1 166087441 166087761 -76576592 + L2 LINE L2 2932 3267 -5 180 125 62 0 chr1 166088159 166088191 -76576162 - L2 LINE L2 -6 3266 3233 513 281 103 13 chr1 166088362 166088586 -76575767 - MIR SINE MIR -13 249 6 186 248 174 28 chr1 166089232 166089341 -76575012 - L2 LINE L2 -2500 814 690 * 324 310 0 0 chr1 166089338 166089425 -76574928 - L2 LINE L2 0 3313 3227 6728 142 7 5 chr1 166089617 166091198 -76573155 - L1M1 LINE L1 -545 5757 4171 2708 265 60 28 chr1 166091195 166091920 -76572433 - L1MDa LINE L1 -5349 1191 354 * 186 43 0 0 chr1 166091920 166091943 -76572410 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2708 265 60 28 chr1 166091943 166092280 -76572073 - L1MDa LINE L1 -6186 354 29 3075 232 79 5 chr1 166092280 166093043 -76571310 - Zaphod DNA AcHobo -3212 819 1 28 0 0 0 chr1 166093786 166093814 -76570539 + AT_rich Low_complexity Low_complexity 1 28 0 196 281 188 0 chr1 166096133 166096197 -76568156 - L2 LINE L2 -4 3268 3193 928 242 154 47 chr1 166096264 166096686 -76567667 + L2 LINE L2 2804 3270 -43 378 0 0 0 chr1 166097104 166097146 -76567207 + (CA)n Simple_repeat Simple_repeat 2 43 0 578 230 0 40 chr1 166097173 166097299 -76567054 + L2 LINE L2 3192 3312 -1 413 239 100 0 chr1 166097322 166097452 -76566901 - Charlie8 DNA MER1_type -2236 181 39 253 127 95 16 chr1 166099002 166099065 -76565288 + GA-rich Low_complexity Low_complexity 2 69 0 304 116 5 0 chr1 166100500 166100544 -76563809 - MLT2B2 LTR ERVL -8 507 465 300 27 0 0 chr1 166100544 166100581 -76563772 + (TG)n Simple_repeat Simple_repeat 2 38 0 191 340 91 74 chr1 166100804 166101057 -76563296 - L2 LINE L2 -27 3245 2985 2105 142 7 0 chr1 166101057 166101367 -76562986 + AluSx SINE Alu 1 312 0 191 340 91 74 chr1 166101367 166101398 -76562955 - L2 LINE L2 -287 2985 2956 180 0 0 0 chr1 166101447 166101467 -76562886 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1942 110 4 0 chr1 166101469 166101724 -76562629 - AluSx SINE Alu -25 287 32 363 23 0 0 chr1 166101929 166101973 -76562380 + (CA)n Simple_repeat Simple_repeat 2 45 0 297 167 0 0 chr1 166101974 166102022 -76562331 + MLT2B2 LTR ERVL 468 515 0 897 286 111 40 chr1 166104232 166104770 -76559583 + L2 LINE L2 2550 3141 -172 2358 74 3 7 chr1 166104770 166105066 -76559287 - AluY SINE Alu -16 295 1 897 286 111 40 chr1 166105066 166105252 -76559101 + L2 LINE L2 3141 3312 -1 552 286 95 32 chr1 166105329 166105581 -76558772 - MLT1H1 LTR MaLR -91 464 197 244 308 77 22 chr1 166105595 166105686 -76558667 + MIR SINE MIR 49 144 -64 1400 114 5 10 chr1 166107333 166107534 -76556819 - AluSc SINE Alu -10 299 100 227 349 74 13 chr1 166107538 166107687 -76556666 + L2 LINE L2 341 498 -2816 369 89 0 18 chr1 166107799 166107855 -76556498 - MLT2A2 LTR ERVL 0 453 399 270 0 0 0 chr1 166107855 166107885 -76556468 + (TA)n Simple_repeat Simple_repeat 1 30 0 214 152 22 22 chr1 166107902 166107948 -76556405 + (TA)n Simple_repeat Simple_repeat 1 46 0 313 245 0 43 chr1 166107960 166108054 -76556299 - L1MC4 LINE L1 -1339 6703 6614 257 258 21 62 chr1 166107975 166108072 -76556281 + L1MC4 LINE L1 6611 6703 -1339 * 234 230 0 100 chr1 166108066 166108166 -76556187 - L1MC4 LINE L1 -1339 6703 6614 * 264 217 43 65 chr1 166108192 166108284 -76556069 - L1MC4 LINE L1 -1339 6703 6614 230 143 0 0 chr1 166108296 166108338 -76556015 - LTR66 LTR ERVL -171 439 398 308 289 0 0 chr1 166108362 166108452 -76555901 - L1MC4 LINE L1 -1339 6703 6614 244 310 23 0 chr1 166108468 166108555 -76555798 - L1MC4 LINE L1 -1339 6703 6615 255 204 0 0 chr1 166108560 166108614 -76555739 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 230 143 0 0 chr1 166108614 166108656 -76555697 + LTR66 LTR ERVL 398 439 -171 246 170 38 0 chr1 166108692 166108745 -76555608 - L1MC4 LINE L1 -1339 6703 6649 2735 68 21 89 chr1 166108749 166109177 -76555176 - MLT2A1 LTR ERVL -45 399 1 405 335 51 70 chr1 166109373 166109887 -76554466 + L2 LINE L2 878 1381 -1933 1555 238 115 35 chr1 166109973 166110514 -76553839 + MLT1L LTR MaLR 24 607 -8 336 341 122 13 chr1 166110518 166110896 -76553457 + L2 LINE L2 1485 1903 -1411 15248 197 36 19 chr1 166110911 166117107 -76547246 + L1PB1 LINE L1 6 6507 -360 243 0 0 0 chr1 166117128 166117155 -76547198 + (CA)n Simple_repeat Simple_repeat 2 28 0 301 202 10 71 chr1 166117170 166117269 -76547084 + L1MC4 LINE L1 6614 6706 -1336 507 93 0 74 chr1 166117271 166117433 -76546920 + (TA)n Simple_repeat Simple_repeat 2 151 0 2304 156 11 16 chr1 166117440 166117634 -76546719 + L1PB1 LINE L1 6492 6685 -182 1901 120 0 11 chr1 166117634 166117908 -76546445 + AluSc SINE Alu 1 271 -38 2304 156 11 16 chr1 166117908 166118091 -76546262 + L1PB1 LINE L1 6685 6867 0 495 348 115 43 chr1 166118245 166119083 -76545270 + L2 LINE L2 2005 2902 -412 2836 90 20 25 chr1 166119088 166119490 -76544863 + MLT2A1 LTR ERVL 1 400 -44 232 301 24 0 chr1 166119491 166119574 -76544779 - L1MC4 LINE L1 -1344 6698 6614 412 208 0 25 chr1 166119574 166119733 -76544620 + (TA)n Simple_repeat Simple_repeat 1 155 0 401 57 38 0 chr1 166119747 166119800 -76544553 + MLT2A2 LTR ERVL 399 453 0 44874 69 15 1 chr1 166119800 166125373 -76538980 + HERVL-A2-A1 LTR ERVL 1 5654 0 1148 49 0 0 chr1 166125373 166125515 -76538838 + MLT2A1 LTR ERVL 1 142 -302 384 83 0 14 chr1 166125521 166125581 -76538772 + MLT2A2 LTR ERVL 402 451 -2 342 0 0 0 chr1 166125615 166125653 -76538700 + (CA)n Simple_repeat Simple_repeat 2 39 0 200 229 83 0 chr1 166125749 166125797 -76538556 + L2 LINE L2 3221 3272 0 198 204 227 0 chr1 166128045 166128111 -76536242 + MIR SINE MIR 38 117 -92 338 247 218 12 chr1 166128133 166128283 -76536070 - MER5A DNA MER1_type 0 189 4 395 298 80 38 chr1 166129408 166129646 -76534707 + MLT1L LTR MaLR 2 249 -366 419 301 28 20 chr1 166129679 166129905 -76534448 + MLT1L LTR MaLR 234 615 0 262 337 41 20 chr1 166129932 166130030 -76534323 + MIR SINE MIR 33 132 -130 1627 211 42 30 chr1 166130638 166130999 -76533354 - MLT1A1 LTR MaLR 0 365 1 198 0 0 0 chr1 166131312 166131334 -76533019 + (T)n Simple_repeat Simple_repeat 1 22 0 506 275 29 75 chr1 166132112 166132172 -76532181 + HAL1 LINE L1 24 85 -2422 2345 102 0 0 chr1 166132172 166132467 -76531886 - AluSg SINE Alu -15 295 1 506 275 29 75 chr1 166132467 166132755 -76531598 + HAL1 LINE L1 85 356 -2151 826 180 11 60 chr1 166132756 166132939 -76531414 - AluJb SINE Alu -10 302 129 23105 76 3 1 chr1 166132941 166136864 -76527489 - L1PA6 LINE L1 -2 6152 2221 942 101 0 0 chr1 166136867 166137006 -76527347 + L1P LINE L1 4867 5005 -1141 * 12085 146 21 25 chr1 166137000 166139219 -76525134 - L1PA6 LINE L1 -3926 2220 11 653 200 15 7 chr1 166139230 166139365 -76524988 - AluJb SINE Alu -176 136 1 3942 253 94 46 chr1 166139378 166141274 -76523079 + HAL1 LINE L1 362 2349 -158 305 234 0 0 chr1 166141329 166141393 -76522960 - L2 LINE L2 -978 2336 2273 554 247 12 12 chr1 166141437 166141599 -76522754 - MER105 DNA DNA -42 162 1 362 345 88 16 chr1 166141652 166141959 -76522394 - L2 LINE L2 -1146 2168 1840 2919 177 24 9 chr1 166142441 166142982 -76521371 - MER44D DNA MER2_type 0 605 2 189 0 0 0 chr1 166143403 166143424 -76520929 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 3607 192 60 27 chr1 166143424 166144241 -76520112 - MER21B LTR ERV1 -19 844 1 578 286 47 88 chr1 166145550 166146084 -76518269 + LTR67 LTR ERVL 3 514 -43 2462 187 68 25 chr1 166146086 166146616 -76517737 + MER41C LTR ERV1 1 553 -1 2487 189 15 0 chr1 166146617 166147078 -76517275 + MER41C-int LTR ERV1 1 468 -7288 49765 90 12 3 chr1 166147079 166154113 -76510240 + MER41C-int LTR ERV1 658 7751 -5 2359 188 65 34 chr1 166154117 166154654 -76509699 + MER41C LTR ERV1 1 554 0 250 255 39 49 chr1 166154880 166154982 -76509371 + MER103 DNA DNA 17 117 -49 404 206 187 0 chr1 166155819 166155926 -76508427 + L2 LINE L2 3186 3312 -1 290 87 22 0 chr1 166156442 166156488 -76507865 + (TG)n Simple_repeat Simple_repeat 2 48 0 209 30 61 0 chr1 166156666 166156699 -76507654 + A-rich Low_complexity Low_complexity 2 36 0 2136 59 44 0 chr1 166156702 166157004 -76507349 + AluY SINE Alu 3 316 0 10926 167 45 36 chr1 166157004 166159231 -76505122 + L1MC3 LINE L1 5324 7576 -209 887 154 0 0 chr1 166159231 166159361 -76504992 + FLAM_C SINE Alu 1 130 -3 10926 167 45 36 chr1 166159361 166159573 -76504780 + L1MC3 LINE L1 7576 7785 0 1542 243 62 47 chr1 166159560 166159947 -76504406 + L1MEc LINE L1 2252 2632 -3583 * 2075 128 0 3 chr1 166159947 166160244 -76504109 - AluSx SINE Alu -16 296 1 1542 243 62 47 chr1 166160244 166160762 -76503591 + L1MEc LINE L1 2632 3129 -3086 279 285 55 99 chr1 166160743 166161237 -76503116 + L1MEc LINE L1 3823 4294 -1921 * 2171 137 0 13 chr1 166161326 166161632 -76502721 + AluSx SINE Alu 1 302 -10 351 286 79 24 chr1 166161641 166161767 -76502586 + L1MEc LINE L1 4327 4459 -1756 1258 210 108 24 chr1 166161778 166162149 -76502204 + LTR40c LTR ERVL 59 460 -5 687 271 33 70 chr1 166162157 166162555 -76501798 + L1MEc LINE L1 4480 4862 -1353 247 323 21 0 chr1 166162589 166162685 -76501668 + L1MEc LINE L1 4951 5048 -1167 237 214 86 0 chr1 166162688 166162758 -76501595 - MER116 DNA Mariner -4 76 1 435 270 78 13 chr1 166162803 166163110 -76501243 + L1MEc LINE L1 5065 5391 -824 3544 177 81 9 chr1 166163110 166163862 -76500491 - Charlie1a DNA MER1_type -649 806 1 992 197 141 75 chr1 166164246 166164622 -76499731 + MER57A LTR ERV1 3 403 0 703 152 162 88 chr1 166165049 166165253 -76499100 + MER20 DNA MER1_type 1 219 0 1653 168 3 16 chr1 166165576 166165923 -76498430 + MER65A LTR ERV1 1 426 -19 1650 268 69 36 chr1 166165980 166166883 -76497470 + MER65A-int LTR ERV1 54 985 -3886 822 211 80 66 chr1 166166875 166167014 -76497339 + MER65A-int LTR ERV1 1304 1440 -6680 * 17304 85 49 0 chr1 166167014 166170228 -76494125 + L1PA7 LINE L1 2888 6151 -3 822 211 80 66 chr1 166170228 166170528 -76493825 + MER65A-int LTR ERV1 1440 1749 -6371 2204 101 10 7 chr1 166170552 166170858 -76493495 + AluY SINE Alu 1 307 -4 1132 179 30 55 chr1 166170859 166171283 -76493070 + MER65A-int LTR ERV1 1725 2323 -4435 791 186 27 41 chr1 166171703 166171924 -76492429 + MER65A-int LTR ERV1 3513 3730 -2868 2469 163 92 88 chr1 166172004 166172645 -76491708 + MER65A-int LTR ERV1 3730 4367 -1964 2326 85 3 0 chr1 166172645 166172939 -76491414 - AluSq SINE Alu -18 295 1 2469 163 92 88 chr1 166172939 166173311 -76491042 + MER65A-int LTR ERV1 4367 4773 -1558 2035 144 3 0 chr1 166173311 166173610 -76490743 - AluSx SINE Alu -12 300 1 2469 163 92 88 chr1 166173610 166173881 -76490472 + MER65A-int LTR ERV1 4773 5042 -1289 24 32 0 0 chr1 166174134 166174165 -76490188 + AT_rich Low_complexity Low_complexity 1 31 0 404 175 23 49 chr1 166174176 166174339 -76490014 + MER65A-int LTR ERV1 3729 3962 -974 1767 242 59 5 chr1 166174506 166174928 -76489425 + MER65A-int LTR ERV1 3618 4062 -809 * 1978 218 15 8 chr1 166174923 166175395 -76488958 + MER65A-int LTR ERV1 4397 4871 0 2293 162 25 25 chr1 166175395 166175434 -76488919 + MER65A LTR ERV1 1 39 -406 225 65 0 0 chr1 166175434 166175465 -76488888 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2293 162 25 25 chr1 166175465 166175870 -76488483 + MER65A LTR ERV1 38 445 0 471 229 204 68 chr1 166176255 166176425 -76487928 + L2 LINE L2 1814 1960 -1354 2168 124 0 3 chr1 166176425 166176731 -76487622 - AluSc SINE Alu -4 305 1 471 229 204 68 chr1 166176731 166176840 -76487513 + L2 LINE L2 1960 2131 -1183 2064 80 58 0 chr1 166176908 166177182 -76487171 + AluSp SINE Alu 1 290 -23 5439 243 37 16 chr1 166177191 166179022 -76485331 + L1MEc LINE L1 2177 4009 -2206 3792 189 68 11 chr1 166179010 166180049 -76484304 + L1MB7 LINE L1 5094 6183 -1 * 1133 241 130 3 chr1 166180055 166180378 -76483975 + L2 LINE L2 2436 2799 -515 305 197 15 15 chr1 166180379 166180445 -76483908 + MER3 DNA MER1_type 39 104 -105 261 155 0 35 chr1 166180471 166180529 -76483824 + MER3 DNA MER1_type 2265 2320 0 1678 152 24 112 chr1 166180569 166180989 -76483364 - MLT1B LTR MaLR -7 383 1 421 215 0 89 chr1 166180989 166181103 -76483250 + MER3 DNA MER1_type 2347 2446 0 677 135 0 45 chr1 166181117 166181228 -76483125 - FLAM_A SINE Alu -22 120 15 736 140 79 22 chr1 166181228 166181406 -76482947 + MER3 DNA MER1_type 2436 2623 0 387 279 167 34 chr1 166181409 166181613 -76482740 + L2 LINE L2 2804 3034 -279 369 197 0 0 chr1 166181629 166181705 -76482648 + (TA)n Simple_repeat Simple_repeat 2 77 0 319 295 218 0 chr1 166181727 166181920 -76482433 - LTR16C LTR ERVL -99 392 158 1578 200 66 30 chr1 166182061 166182426 -76481927 + MLT1B LTR MaLR 10 387 -3 473 228 106 42 chr1 166182442 166182631 -76481722 + L2 LINE L2 3113 3313 0 702 234 72 12 chr1 166182689 166182856 -76481497 - MER45A DNA AcHobo -1 177 1 292 353 136 29 chr1 166182871 166183326 -76481027 + L2 LINE L2 2243 2775 -539 2174 117 3 3 chr1 166183326 166183626 -76480727 - AluSc SINE Alu -9 300 1 292 353 136 29 chr1 166183626 166183753 -76480600 + L2 LINE L2 2775 2887 -427 338 247 31 0 chr1 166183790 166183887 -76480466 - MIR SINE MIR -98 164 65 183 167 0 0 chr1 166183906 166183948 -76480405 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 303 285 5 66 chr1 166185473 166185610 -76478743 - MIR SINE MIR -63 145 63 1887 161 32 24 chr1 166185610 166185982 -76478371 + THE1C LTR MaLR 1 375 0 303 285 5 66 chr1 166185982 166186029 -76478324 - MIR SINE MIR -145 63 15 933 149 154 31 chr1 166187697 166187892 -76476461 + MER20 DNA MER1_type 1 219 0 1986 193 107 15 chr1 166189005 166189428 -76474925 + MLT2B1 LTR ERVL 1 384 -136 252 0 0 0 chr1 166189428 166189456 -76474897 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 414 39 0 0 chr1 166189455 166189507 -76474846 + (CA)n Simple_repeat Simple_repeat 1 52 0 1986 193 107 15 chr1 166189456 166189559 -76474794 + MLT2B1 LTR ERVL 384 520 0 212 212 15 0 chr1 166191652 166191718 -76472635 + GA-rich Low_complexity Low_complexity 2 68 0 * 312 130 0 39 chr1 166191707 166191784 -76472569 + (GGAGA)n Simple_repeat Simple_repeat 2 75 0 492 156 0 0 chr1 166192590 166192680 -76471673 + (TG)n Simple_repeat Simple_repeat 1 90 0 699 279 74 0 chr1 166193816 166194045 -76470308 + MIR SINE MIR 13 258 -4 443 270 15 29 chr1 166194097 166194234 -76470119 + MIR3 SINE MIR 61 195 -13 252 0 0 0 chr1 166197531 166197559 -76466794 + (TG)n Simple_repeat Simple_repeat 2 29 0 401 104 30 0 chr1 166197592 166197659 -76466694 + CT-rich Low_complexity Low_complexity 4 72 0 451 231 30 13 chr1 166197746 166197880 -76466473 - MIR3 SINE MIR -6 202 67 1651 178 14 14 chr1 166199329 166199621 -76464732 + AluJo SINE Alu 1 292 -20 387 89 0 0 chr1 166199621 166199677 -76464676 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 387 229 12 12 chr1 166200689 166200772 -76463581 + MER81 DNA DNA 1 83 -31 735 291 97 44 chr1 166201785 166202066 -76462287 + L3 LINE CR1 1050 1363 -214 6647 48 1 0 chr1 166202066 166202862 -76461491 + L1PA5 LINE L1 5356 6152 -2 735 291 97 44 chr1 166202862 166203013 -76461340 + L3 LINE CR1 1363 1505 -72 2199 105 7 7 chr1 166203490 166203786 -76460567 - AluSg SINE Alu -1 309 14 2160 133 0 0 chr1 166204660 166204969 -76459384 + AluSx SINE Alu 2 310 -2 1311 39 11 11 chr1 166207832 166208011 -76456342 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 581 89 0 11 chr1 166208011 166208101 -76456252 + (TTCC)n Simple_repeat Simple_repeat 1 89 0 2296 102 0 0 chr1 166208101 166208396 -76455957 - AluY SINE Alu -16 295 1 342 300 17 8 chr1 166208603 166208723 -76455630 - MIR3 SINE MIR -6 202 82 1516 230 55 39 chr1 166208855 166209294 -76455059 + LTR16A1 LTR ERVL 1 446 -11 623 244 83 51 chr1 166209896 166210208 -76454145 - MER113 DNA MER1_type? -195 326 5 240 267 99 53 chr1 166210424 166210555 -76453798 - L2 LINE L2 0 3272 3136 2332 174 62 120 chr1 166211009 166211745 -76452608 + LTR8A LTR ERV1 34 727 0 215 79 26 0 chr1 166212650 166212688 -76451665 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1879 150 10 7 chr1 166213719 166214026 -76450327 - AluSx SINE Alu -3 309 2 343 309 72 14 chr1 166214728 166214867 -76449486 + MIR SINE MIR 25 171 -91 215 281 70 44 chr1 166215878 166215992 -76448361 - MIR SINE MIR -48 214 98 357 293 17 10 chr1 166217403 166217535 -76446818 + MER5A DNA MER1_type 40 169 -9 257 297 0 0 chr1 166217682 166217746 -76446607 + CT-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr1 166218172 166218193 -76446160 + AT_rich Low_complexity Low_complexity 1 21 0 273 348 30 15 chr1 166218868 166219003 -76445350 - L2 LINE L2 -2 3270 3134 199 364 35 7 chr1 166219383 166219526 -76444827 - L2 LINE L2 -611 2703 2557 830 286 66 66 chr1 166219856 166220552 -76443801 + L2 LINE L2 2624 3311 -2 3809 126 17 8 chr1 166220727 166221322 -76443031 - MER51C LTR ERV1 0 640 1 730 294 29 18 chr1 166221393 166221733 -76442620 + L1M4 LINE L1 3346 3689 -2457 1592 89 0 5 chr1 166221737 166221939 -76442414 + AluSg/x SINE Alu 78 278 -32 217 0 29 29 chr1 166221942 166221976 -76442377 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 33 66 0 0 chr1 166222308 166222369 -76441984 + AT_rich Low_complexity Low_complexity 1 61 0 470 323 65 32 chr1 166222437 166222933 -76441420 + HAL1 LINE L1 1109 1620 -887 717 281 54 10 chr1 166223317 166223612 -76440741 + L1ME3A LINE L1 3191 3498 -2648 216 135 0 0 chr1 166223717 166223754 -76440599 + (A)n Simple_repeat Simple_repeat 1 37 0 370 306 63 43 chr1 166223816 166224117 -76440236 + L1ME3A LINE L1 3657 3963 -2183 23 54 0 0 chr1 166224199 166224236 -76440117 + AT_rich Low_complexity Low_complexity 1 37 0 2011 141 23 0 chr1 166224250 166224554 -76439799 - AluSx SINE Alu -1 311 1 30 27 0 0 chr1 166224561 166224598 -76439755 + AT_rich Low_complexity Low_complexity 1 37 0 297 306 57 73 chr1 166224710 166225600 -76438753 + L1ME3A LINE L1 4108 4983 -1163 785 321 43 37 chr1 166225735 166226307 -76438046 + L1ME3A LINE L1 5303 5881 -289 522 282 78 64 chr1 166225785 166226378 -76437975 + L1MB1 LINE L1 5354 5954 -235 * 24 0 0 0 chr1 166229533 166229557 -76434796 + AT_rich Low_complexity Low_complexity 1 24 0 866 229 38 29 chr1 166230002 166230242 -76434111 + MIR SINE MIR 18 259 -3 318 288 131 39 chr1 166230339 166230492 -76433861 + MIR SINE MIR 32 198 -64 2248 125 3 10 chr1 166230666 166230978 -76433375 - AluSx SINE Alu -2 310 1 300 354 16 8 chr1 166232048 166232175 -76432178 - MIR SINE MIR -61 147 20 1193 302 159 31 chr1 166233437 166234156 -76430197 - L3 LINE CR1 -142 1435 625 349 261 87 9 chr1 166234640 166234755 -76429598 + L2 LINE L2 3189 3312 -1 239 351 81 20 chr1 166234816 166234964 -76429389 - L2 LINE L2 -219 3053 2897 470 304 150 62 chr1 166235029 166235483 -76428870 - L3 LINE CR1 -993 584 91 2121 123 0 0 chr1 166235970 166236278 -76428075 - AluSx SINE Alu -3 309 2 1005 170 0 0 chr1 166237897 166238062 -76426291 - FRAM SINE Alu -14 162 1 182 280 137 77 chr1 166239023 166239205 -76425148 + L3b LINE CR1 1294 1486 -97 2120 171 57 46 chr1 166244960 166245417 -76418936 - MLT1D LTR MaLR 0 505 44 2180 108 3 0 chr1 166245501 166245806 -76418547 + AluSx SINE Alu 1 306 -6 1464 191 128 11 chr1 166246042 166246393 -76417960 - MLT1C LTR MaLR -3 464 73 530 270 146 17 chr1 166246929 166247107 -76417246 + MIR SINE MIR 26 226 -36 279 0 0 0 chr1 166247172 166247203 -76417150 + (T)n Simple_repeat Simple_repeat 1 31 0 231 174 232 0 chr1 166248222 166248291 -76416062 - L2 LINE L2 -2 3311 3227 182 289 0 0 chr1 166248339 166248384 -76415969 - L2 LINE L2 -12 3301 3257 346 316 10 0 chr1 166248540 166248638 -76415715 - MIR SINE MIR -69 139 41 2303 162 62 2 chr1 166248740 166249142 -76415211 + MSTB LTR MaLR 1 426 0 246 296 153 41 chr1 166249963 166250061 -76414292 - L2 LINE L2 -272 3041 2933 286 257 9 9 chr1 166251195 166251418 -76412935 + (TG)n Simple_repeat Simple_repeat 1 223 0 219 135 0 27 chr1 166251947 166251984 -76412369 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 611 221 61 55 chr1 166252658 166252821 -76411532 - MIR SINE MIR -16 246 83 551 286 63 19 chr1 166253121 166253327 -76411026 - MIR SINE MIR -12 250 36 238 87 43 0 chr1 166253677 166253723 -76410630 + (TA)n Simple_repeat Simple_repeat 2 49 0 769 267 46 5 chr1 166253851 166254105 -76410248 + MIR SINE MIR 2 262 0 345 299 250 5 chr1 166254880 166255084 -76409269 + L2 LINE L2 2573 2826 -488 288 0 0 0 chr1 166255136 166255168 -76409185 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 559 286 97 47 chr1 166255448 166255731 -76408622 - L2 LINE L2 -341 2973 2667 2354 82 3 0 chr1 166255731 166256035 -76408318 + AluSp SINE Alu 1 305 -8 559 286 97 47 chr1 166256035 166256111 -76408242 - L2 LINE L2 -647 2667 2596 639 105 23 0 chr1 166256111 166256197 -76408156 + AluSg/x SINE Alu 202 289 -23 403 342 57 0 chr1 166257080 166257238 -76407115 + MIR SINE MIR 20 186 -76 1153 73 0 0 chr1 166257275 166257425 -76406928 + AluYa5 SINE Alu 153 302 -9 183 42 0 0 chr1 166258214 166258238 -76406115 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1190 301 102 17 chr1 166258570 166259108 -76405245 + L2 LINE L2 2701 3292 -21 2190 155 57 39 chr1 166259382 166259455 -76404898 - MLT1C LTR MaLR -2 465 395 2076 107 0 7 chr1 166259455 166259755 -76404598 + AluSc SINE Alu 3 300 -9 2190 155 57 39 chr1 166259755 166260138 -76404215 - MLT1C LTR MaLR -72 395 1 623 281 23 29 chr1 166262370 166262541 -76401812 + MER91B DNA MER1_type 14 183 -7 385 291 43 8 chr1 166262565 166262682 -76401671 - MIR SINE MIR -56 152 32 297 241 60 12 chr1 166263237 166263320 -76401033 - MIR SINE MIR -97 165 79 218 273 0 0 chr1 166264302 166264346 -76400007 + polypurine Low_complexity Low_complexity 1 44 0 280 273 26 0 chr1 166264482 166264559 -76399794 + MLT1K LTR MaLR 509 587 -1 273 273 0 0 chr1 166264973 166265028 -76399325 + L2 LINE L2 3217 3271 -1 3282 148 103 23 chr1 166265948 166266601 -76397752 + MER39 LTR ERV1 1 705 -2 186 289 39 0 chr1 166267217 166267269 -76397084 + MIR SINE MIR 93 146 -116 234 310 27 102 chr1 166267597 166267784 -76396569 - MIR SINE MIR -16 246 74 183 216 39 0 chr1 166268265 166268316 -76396037 - L2 LINE L2 -47 3266 3214 314 295 77 97 chr1 166269542 166269749 -76394604 + MIR3 SINE MIR 3 205 -3 218 315 76 0 chr1 166271133 166271249 -76393104 - MIR SINE MIR -63 145 42 2160 205 12 12 chr1 166273848 166274278 -76390075 - MER63B DNA MER1_type -6 430 1 30 27 0 0 chr1 166275170 166275207 -76389146 + AT_rich Low_complexity Low_complexity 1 37 0 587 261 166 14 chr1 166275403 166275614 -76388739 - MIR SINE MIR -16 246 4 302 270 77 42 chr1 166275697 166275849 -76388504 - MIR SINE MIR -40 168 20 349 303 113 14 chr1 166277143 166277285 -76387068 + MIR3 SINE MIR 42 197 -11 21 0 0 0 chr1 166278676 166278697 -76385656 + AT_rich Low_complexity Low_complexity 1 21 0 2777 16 0 0 chr1 166278859 166279172 -76385181 + AluYb8 SINE Alu 1 313 -5 565 244 94 28 chr1 166280706 166280919 -76383434 - LTR16C LTR ERVL 0 491 265 376 257 83 0 chr1 166282157 166282266 -76382087 - MIR SINE MIR -114 148 31 392 168 10 0 chr1 166282382 166282483 -76381870 + (TG)n Simple_repeat Simple_repeat 1 102 0 266 261 60 11 chr1 166284582 166284711 -76379642 - MIR SINE MIR -76 186 10 764 261 62 29 chr1 166285378 166285619 -76378734 + MIR SINE MIR 8 256 -6 362 278 67 72 chr1 166286224 166286595 -76377758 + L3 LINE CR1 800 1240 -337 240 217 0 0 chr1 166286608 166286654 -76377699 - L2 LINE L2 0 3313 3268 588 242 117 8 chr1 166286879 166287153 -76377200 - L2 LINE L2 -250 3063 2755 945 264 80 54 chr1 166287372 166287759 -76376594 + MLT1I LTR MaLR 1 397 -12 537 314 59 17 chr1 166287957 166288193 -76376160 + L3 LINE CR1 1329 1574 -3 2068 196 30 28 chr1 166288234 166288699 -76375654 - MLT1C LTR MaLR -1 466 1 191 222 19 0 chr1 166288723 166288777 -76375576 - MIR SINE MIR -48 214 160 371 265 46 40 chr1 166288903 166289054 -76375299 - MIR SINE MIR -92 170 19 2394 97 0 0 chr1 166289861 166290159 -76374194 - AluSx SINE Alu -14 298 1 1028 118 52 0 chr1 166290531 166290684 -76373669 + MLT1A1 LTR MaLR 1 161 -204 1676 168 51 4 chr1 166290688 166290962 -76373391 + AluJb SINE Alu 5 291 -21 664 165 9 0 chr1 166290978 166291087 -76373266 + MLT1A1 LTR MaLR 256 365 0 219 313 31 0 chr1 166291087 166291151 -76373202 + polypurine Low_complexity Low_complexity 1 66 0 232 211 26 0 chr1 166292950 166293026 -76371327 + (CATA)n Simple_repeat Simple_repeat 3 80 0 274 229 251 0 chr1 166293035 166293176 -76371177 - MIR SINE MIR -62 200 30 212 288 150 0 chr1 166293274 166293434 -76370919 - L3b LINE CR1 -196 1387 1204 2421 53 0 0 chr1 166293560 166293912 -76370441 + AluY SINE Alu 1 352 0 225 175 0 0 chr1 166293923 166293963 -76370390 - L2 LINE L2 -93 3220 3181 2087 119 31 7 chr1 166295275 166295569 -76368784 + AluSc SINE Alu 1 301 -8 1940 102 0 0 chr1 166296371 166296615 -76367738 - AluSq SINE Alu -69 244 1 184 224 60 52 chr1 166297500 166297602 -76366751 - MIR SINE MIR -46 216 115 700 229 44 49 chr1 166298771 166298976 -76365377 - MIR SINE MIR -34 228 25 246 324 14 35 chr1 166299805 166299950 -76364403 + MIR SINE MIR 15 156 -106 243 200 0 0 chr1 166300842 166300902 -76363451 - L1ME4a LINE L1 -1 6120 6061 490 285 58 21 chr1 166302077 166302281 -76362072 + MIR SINE MIR 49 255 -7 508 114 66 0 chr1 166303600 166303767 -76360586 + (TA)n Simple_repeat Simple_repeat 1 178 0 234 280 28 9 chr1 166303778 166303885 -76360468 + MER112 DNA MER1_type 43 151 -109 * 295 196 0 0 chr1 166303873 166303924 -76360429 - tRNA-Arg-CGC tRNA tRNA -24 52 2 1385 164 52 52 chr1 166304061 166304385 -76359968 - MER33 DNA MER1_type 0 324 1 29 0 0 0 chr1 166304429 166304458 -76359895 + AT_rich Low_complexity Low_complexity 1 29 0 1050 109 4 7 chr1 166304496 166304765 -76359588 + (TTCC)n Simple_repeat Simple_repeat 1 267 0 378 287 8 25 chr1 166305318 166305440 -76358913 - MIR SINE MIR -61 201 82 256 280 80 8 chr1 166305988 166306113 -76358240 + MER103 DNA DNA 2 135 -31 421 222 291 21 chr1 166306191 166306380 -76357973 + MIR SINE MIR 8 247 -15 263 298 48 36 chr1 166306696 166306780 -76357573 - MER117 DNA MER1_type 0 197 113 227 95 54 54 chr1 166306863 166306937 -76357416 + (TATAA)n Simple_repeat Simple_repeat 1 74 0 291 254 0 16 chr1 166307442 166307505 -76356848 - MIR SINE MIR -131 77 16 209 253 108 36 chr1 166308164 166308247 -76356106 - L2 LINE L2 0 3313 3225 261 57 0 0 chr1 166308745 166308780 -76355573 + (TC)n Simple_repeat Simple_repeat 2 36 0 196 194 0 30 chr1 166309395 166309462 -76354891 + CT-rich Low_complexity Low_complexity 1 65 0 1078 260 34 86 chr1 166309592 166310127 -76354226 + MLT1J LTR MaLR 5 511 0 265 316 6 90 chr1 166311717 166311894 -76352459 + L2 LINE L2 3019 3180 -92 1596 248 96 26 chr1 166311894 166312507 -76351846 - L2 LINE L2 -548 2766 2111 6898 37 4 0 chr1 166312511 166313341 -76351012 - L1PA4 LINE L1 -4033 2113 1281 * 27353 32 4 1 chr1 166313340 166317374 -76346979 + L1PA4 LINE L1 2114 6155 0 451 247 9 119 chr1 166317421 166317648 -76346705 - L2 LINE L2 -1213 2101 1900 863 272 75 4 chr1 166317649 166317928 -76346425 - L2 LINE L2 -1657 1657 1359 216 263 21 116 chr1 166317932 166318027 -76346326 + L2 LINE L2 3186 3271 -1 219 180 20 20 chr1 166318226 166318276 -76346077 + (TATG)n Simple_repeat Simple_repeat 1 50 0 335 315 17 57 chr1 166321615 166321822 -76342531 - L2 LINE L2 -268 3045 2857 2345 101 0 0 chr1 166321822 166322128 -76342225 + AluY SINE Alu 1 306 -5 335 315 17 57 chr1 166322128 166322255 -76342098 - L2 LINE L2 -456 2857 2727 250 219 23 31 chr1 166323679 166323807 -76340546 + (TATG)n Simple_repeat Simple_repeat 4 130 0 353 293 28 0 chr1 166323814 166323920 -76340433 + (TG)n Simple_repeat Simple_repeat 2 110 0 491 221 8 23 chr1 166324681 166324812 -76339541 + MIR SINE MIR 134 262 0 2286 94 20 3 chr1 166325045 166325342 -76339011 - AluSc SINE Alu -6 303 2 266 349 0 0 chr1 166326096 166326182 -76338171 + (CA)n Simple_repeat Simple_repeat 1 86 0 209 216 0 0 chr1 166326257 166326294 -76338059 + polypyrimidine Low_complexity Low_complexity 3 39 0 433 229 61 155 chr1 166327235 166327532 -76336821 + L2 LINE L2 3004 3272 0 319 269 76 17 chr1 166327921 166328040 -76336313 - MIR3 SINE MIR -7 201 76 1816 42 0 0 chr1 166328054 166328271 -76336082 - L1PA5 LINE L1 0 6154 5938 321 276 156 35 chr1 166329067 166329472 -76334881 - L2 LINE L2 -26 3287 2834 1226 174 1 1 chr1 166329548 166329781 -76334572 + L1MB4 LINE L1 5655 5887 -296 768 196 29 6 chr1 166329799 166329972 -76334381 + L1MB4 LINE L1 6004 6180 0 245 158 53 35 chr1 166330045 166330102 -76334251 - L1MC4 LINE L1 -23 8019 7962 1625 165 16 53 chr1 166330384 166330706 -76333647 - AluJo SINE Alu -2 310 1 2409 72 0 3 chr1 166331308 166331600 -76332753 - AluSx SINE Alu -16 296 6 250 310 0 0 chr1 166331620 166331691 -76332662 + MIR SINE MIR 78 148 -114 1161 235 189 44 chr1 166331700 166332177 -76332176 + MLT1H1 LTR MaLR 10 555 0 1345 278 49 41 chr1 166332569 166332722 -76331631 + L2 LINE L2 2617 2767 -546 570 231 15 37 chr1 166332722 166332856 -76331497 + MER94 DNA DNA 1 131 -3 1345 278 49 41 chr1 166332856 166333358 -76330995 + L2 LINE L2 2767 3294 -19 355 319 83 30 chr1 166334647 166334816 -76329537 - MIR SINE MIR -70 192 15 678 226 71 0 chr1 166334823 166334978 -76329375 + MIR SINE MIR 96 261 -1 253 284 163 28 chr1 166335155 166335296 -76329057 - L2 LINE L2 0 3313 3154 466 221 6 12 chr1 166335747 166335910 -76328443 + (CCA)n Simple_repeat Simple_repeat 2 163 0 356 275 0 11 chr1 166335962 166336140 -76328213 + (CCA)n Simple_repeat Simple_repeat 2 177 0 180 0 0 0 chr1 166336705 166336725 -76327628 + (GA)n Simple_repeat Simple_repeat 2 21 0 458 311 68 42 chr1 166337433 166337623 -76326730 - MIR SINE MIR -55 207 13 431 319 28 0 chr1 166337705 166337849 -76326504 + (CATG)n Simple_repeat Simple_repeat 1 148 0 335 284 142 39 chr1 166338451 166338683 -76325670 - L1 LINE L1 -2818 3328 3073 449 322 35 28 chr1 166338706 166338941 -76325412 + MIR SINE MIR 13 251 -11 952 292 82 43 chr1 166340239 166340705 -76323648 - MLT1L LTR MaLR -116 499 16 189 0 0 0 chr1 166341638 166341659 -76322694 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 669 286 56 5 chr1 166342013 166342209 -76322144 + MIR SINE MIR 57 262 0 200 204 0 0 chr1 166342434 166342478 -76321875 + L2 LINE L2 3265 3308 -5 573 270 49 27 chr1 166342928 166343137 -76321216 - MIR SINE MIR -29 233 16 222 325 157 31 chr1 166345029 166345220 -76319133 + MIR SINE MIR 6 220 -42 196 188 0 0 chr1 166345278 166345310 -76319043 - MIR SINE MIR -5 257 226 260 328 37 8 chr1 166345499 166345633 -76318720 - L2 LINE L2 -300 2972 2835 248 308 212 30 chr1 166345732 166346034 -76318319 - L2 LINE L2 -686 2628 2272 251 317 24 0 chr1 166346068 166346150 -76318203 - L2 LINE L2 -78 3194 3111 369 319 112 61 chr1 166346412 166347234 -76317119 - L2 LINE L2 -410 2904 2041 25 31 0 0 chr1 166347316 166347348 -76317005 + AT_rich Low_complexity Low_complexity 1 32 0 1627 102 17 0 chr1 166347349 166347584 -76316769 - L1MA1 LINE L1 -4 6298 6060 3867 139 49 10 chr1 166348147 166348822 -76315531 - Tigger3b DNA MER2_type 0 1231 531 999 162 0 0 chr1 166348823 166348990 -76315363 + FRAM SINE Alu 1 165 -11 3234 147 30 11 chr1 166348990 166349515 -76314838 - Tigger3b DNA MER2_type -695 536 2 1913 158 50 29 chr1 166351010 166351391 -76312962 + MLT1B LTR MaLR 2 390 0 305 271 133 4 chr1 166351673 166351844 -76312509 + MIR SINE MIR 1 257 -5 320 337 72 59 chr1 166352272 166352599 -76311754 + L2 LINE L2 2767 3105 -167 226 276 35 0 chr1 166353071 166353129 -76311224 + MIR SINE MIR 85 144 -118 222 348 30 37 chr1 166355166 166355301 -76309052 + MIR3 SINE MIR 3 136 -72 468 264 146 34 chr1 166355807 166355985 -76308368 - MIR SINE MIR -25 237 40 297 221 0 0 chr1 166357139 166357207 -76307146 + GA-rich Low_complexity Low_complexity 1 68 0 315 284 28 9 chr1 166357210 166357319 -76307034 + L1M4 LINE L1 3073 3183 -2963 318 318 190 15 chr1 166357396 166357591 -76306762 - MIR SINE MIR -5 257 29 187 167 0 0 chr1 166358020 166358050 -76306303 + L2 LINE L2 3275 3304 -9 216 97 0 0 chr1 166358063 166358094 -76306259 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 242 269 144 19 chr1 166358910 166359014 -76305339 + L2 LINE L2 3155 3271 -1 299 306 30 126 chr1 166359905 166360366 -76303987 - L2 LINE L2 -15 3257 2841 598 265 0 14 chr1 166360816 166360963 -76303390 + L2 LINE L2 3128 3272 0 182 306 20 0 chr1 166360981 166361030 -76303323 + MIR SINE MIR 97 146 -116 186 43 0 0 chr1 166361360 166361383 -76302970 + (TC)n Simple_repeat Simple_repeat 2 24 0 626 295 29 0 chr1 166362646 166362819 -76301534 - MIR SINE MIR 0 262 85 2019 166 3 56 chr1 166362826 166362959 -76301394 - MER1B DNA MER1_type -2373 339 200 7322 46 3 0 chr1 166362959 166364018 -76300335 - L1PA7 LINE L1 0 6154 5093 2019 166 3 56 chr1 166364018 166364240 -76300113 - MER1B DNA MER1_type -2512 200 3 530 314 76 5 chr1 166364406 166364629 -76299724 + MIR SINE MIR 17 255 -7 189 171 0 0 chr1 166366619 166366654 -76297699 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 6341 108 10 0 chr1 166366741 166368229 -76296124 + L1PA11 LINE L1 4675 6172 -2 2457 56 3 0 chr1 166368476 166368781 -76295572 - AluY SINE Alu -5 306 1 359 244 13 76 chr1 166369488 166369713 -76294640 + L1MC5 LINE L1 7731 7941 -20 334 255 230 43 chr1 166371711 166371872 -76292481 - L3b LINE CR1 -183 1400 1210 216 0 0 0 chr1 166371879 166371903 -76292450 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 301 296 106 58 chr1 166371911 166372100 -76292253 - L2 LINE L2 0 3272 3075 383 291 45 0 chr1 166372138 166372248 -76292105 + L2 LINE L2 3158 3272 0 393 260 107 47 chr1 166373396 166373565 -76290788 - MIR SINE MIR -10 252 74 560 277 40 0 chr1 166373608 166373756 -76290597 - MIR SINE MIR -11 251 98 2094 132 0 0 chr1 166374611 166374963 -76289390 + AluSx SINE Alu 1 312 0 421 331 143 7 chr1 166375087 166375374 -76288979 + MLT1J2 LTR MaLR 64 389 -61 198 283 33 0 chr1 166376130 166376190 -76288163 - MIR SINE MIR -3 259 198 2097 194 46 107 chr1 166377778 166378472 -76285881 + MLT1E1 LTR MaLR 2 653 -1 241 162 29 0 chr1 166378502 166378570 -76285783 + CT-rich Low_complexity Low_complexity 3 72 0 322 262 133 86 chr1 166378641 166378874 -76285479 - L2 LINE L2 0 3272 3029 526 246 0 131 chr1 166378901 166379100 -76285253 - MER5B DNA MER1_type 0 178 6 756 313 58 11 chr1 166379113 166379523 -76284830 + LTR16A LTR ERVL 9 457 0 225 362 87 5 chr1 166379523 166379708 -76284645 - L2 LINE L2 -268 3004 2805 535 279 60 22 chr1 166381058 166381241 -76283112 - MIR SINE MIR -6 256 67 1501 197 36 42 chr1 166381586 166381946 -76282407 + MLT1B LTR MaLR 33 390 0 606 261 70 0 chr1 166382437 166382579 -76281774 + MIR SINE MIR 41 192 -70 1849 128 17 14 chr1 166382592 166382881 -76281472 + AluSx SINE Alu 1 290 -22 1842 190 26 34 chr1 166383215 166383599 -76280754 + MLT1B LTR MaLR 10 390 0 231 279 127 85 chr1 166383647 166383812 -76280541 - L2 LINE L2 0 3272 3101 277 281 52 10 chr1 166384639 166384735 -76279618 + L2 LINE L2 3206 3305 -8 2007 105 3 0 chr1 166384838 166385123 -76279230 + L1PA8 LINE L1 5887 6172 0 1623 219 97 67 chr1 166385180 166385706 -76278647 + MLT1F LTR MaLR 1 542 0 1827 165 0 21 chr1 166386776 166387067 -76277286 + AluJb SINE Alu 3 287 -25 180 0 0 0 chr1 166387068 166387088 -76277265 + (AAATG)n Simple_repeat Simple_repeat 1 20 0 1099 94 0 82 chr1 166388574 166388745 -76275608 - AluSx SINE Alu -117 195 39 189 281 18 0 chr1 166388945 166389002 -76275351 - L2 LINE L2 -336 2977 2920 445 286 145 41 chr1 166389288 166390103 -76274250 - L2 LINE L2 -22 3291 2372 320 255 32 0 chr1 166391872 166391966 -76272387 + MIR SINE MIR 22 118 -90 227 274 25 76 chr1 166392055 166392212 -76272141 - Charlie8 DNA MER1_type -2130 287 139 200 351 13 0 chr1 166394126 166394203 -76270150 - L2 LINE L2 -1 3312 3235 192 260 26 78 chr1 166395387 166395464 -76268889 - MIR SINE MIR -79 183 111 2006 150 3 0 chr1 166395937 166396223 -76268130 - AluJo SINE Alu -25 287 1 217 335 195 5 chr1 166396369 166396590 -76267763 + L2 LINE L2 2715 2977 -337 235 349 82 14 chr1 166396816 166396962 -76267391 + L2 LINE L2 3112 3267 -5 206 156 22 0 chr1 166397517 166397562 -76266791 + CT-rich Low_complexity Low_complexity 2 47 0 195 204 0 0 chr1 166398062 166398106 -76266247 + (TA)n Simple_repeat Simple_repeat 2 45 0 631 262 211 29 chr1 166398796 166399276 -76265077 - L2 LINE L2 0 3313 2721 1344 170 59 5 chr1 166399276 166399678 -76264675 - MER84 LTR ERVI 0 507 1 841 259 106 7 chr1 166399678 166399952 -76264401 - L2 LINE L2 -589 2725 2425 214 335 30 71 chr1 166404051 166404248 -76260105 + MIR3 SINE MIR 3 191 -17 194 340 168 5 chr1 166404744 166404843 -76259510 - MIR SINE MIR -6 256 174 303 28 0 0 chr1 166404843 166404879 -76259474 + (CAT)n Simple_repeat Simple_repeat 2 37 0 194 340 168 5 chr1 166404879 166404976 -76259377 - MIR SINE MIR -88 174 28 181 358 64 18 chr1 166405758 166405867 -76258486 - L2 LINE L2 -249 3023 2910 372 297 174 10 chr1 166406031 166406226 -76258127 + MIR SINE MIR 34 260 -2 325 101 14 14 chr1 166407123 166407192 -76257161 + (CA)n Simple_repeat Simple_repeat 2 70 0 1412 98 74 23 chr1 166407277 166407492 -76256861 + MER30 DNA MER1_type 5 230 0 288 274 19 27 chr1 166407511 166407689 -76256664 - L1MC/D LINE L1 -299 5822 5648 227 261 0 0 chr1 166408286 166408332 -76256021 + polypurine Low_complexity Low_complexity 2 47 0 180 308 0 0 chr1 166408380 166408432 -76255921 + L2 LINE L2 3202 3253 -19 1124 82 0 25 chr1 166410348 166410506 -76253847 - L1PA4 LINE L1 -3 6152 5999 493 277 45 11 chr1 166410692 166410869 -76253484 + MER5A DNA MER1_type 7 189 0 227 316 187 18 chr1 166411220 166411391 -76252962 - MIR SINE MIR -13 249 50 1165 212 105 41 chr1 166411732 166412170 -76252183 - MLT1C LTR MaLR 0 467 1 2627 83 3 28 chr1 166412623 166412986 -76251367 - THE1A LTR MaLR 0 355 2 1776 206 19 41 chr1 166414118 166414535 -76249818 - MLT1C LTR MaLR 0 467 60 289 285 111 0 chr1 166414967 166415111 -76249242 + MIR3 SINE MIR 39 198 -10 237 315 117 0 chr1 166415212 166415374 -76248979 - L2 LINE L2 -324 2989 2809 2089 190 49 7 chr1 166415772 166416220 -76248133 + MLT1C LTR MaLR 1 467 0 358 273 78 89 chr1 166416220 166416491 -76247862 - L2 LINE L2 -196 3076 2809 207 315 152 22 chr1 166416682 166416757 -76247596 - L2 LINE L2 0 3313 3249 639 318 20 4 chr1 166416757 166417012 -76247341 - MIR SINE MIR 0 262 4 207 315 152 22 chr1 166417012 166417212 -76247141 - L2 LINE L2 -64 3249 3002 367 167 13 13 chr1 166417277 166417355 -76246998 - MIR SINE MIR -84 178 101 318 285 26 53 chr1 166419124 166419275 -76245078 + MIR3 SINE MIR 46 192 -16 346 259 52 9 chr1 166420888 166421004 -76243349 + MIR SINE MIR 32 152 -110 432 214 20 0 chr1 166421226 166421324 -76243029 - MER5A DNA MER1_type -80 109 10 444 273 86 0 chr1 166421915 166422043 -76242310 - MIR3 SINE MIR -7 201 63 203 264 115 46 chr1 166422075 166422162 -76242191 - MIR3 SINE MIR -115 93 1 186 43 0 0 chr1 166423797 166423820 -76240533 + (TTCC)n Simple_repeat Simple_repeat 4 26 0 276 192 39 0 chr1 166424396 166424448 -76239905 + LTR39 LTR ERV1 1 54 -729 565 268 43 18 chr1 166424789 166424953 -76239400 - MIR SINE MIR -74 188 21 471 183 0 12 chr1 166425441 166425523 -76238830 + MER63 DNA MER1_type 681 761 -299 197 286 0 0 chr1 166425839 166425895 -76238458 - L2 LINE L2 0 3272 3217 274 287 148 0 chr1 166425915 166426023 -76238330 + L2 LINE L2 3147 3270 -2 199 374 99 8 chr1 166427036 166427167 -76237186 + L2 LINE L2 3129 3271 -1 1820 163 0 10 chr1 166427239 166427533 -76236820 + AluJo SINE Alu 1 291 -21 2634 197 60 13 chr1 166428073 166428677 -76235676 - MER92B LTR ERV1 0 636 5 313 321 63 54 chr1 166429593 166429926 -76234427 - L1ME3A LINE L1 -214 5956 5621 428 293 87 41 chr1 166429959 166430549 -76233804 - L1ME3A LINE L1 -619 5551 4929 378 348 26 35 chr1 166430923 166431150 -76233203 - MIR SINE MIR -4 258 34 529 298 127 37 chr1 166431807 166432216 -76232137 - LTR16A1 LTR ERVL 0 457 12 288 274 39 20 chr1 166432287 166432389 -76231964 - MIR3 SINE MIR -38 170 67 453 253 40 40 chr1 166433289 166433463 -76230890 + L2 LINE L2 3140 3313 0 545 278 82 16 chr1 166433506 166433700 -76230653 - MIR SINE MIR -36 226 20 192 271 43 29 chr1 166435670 166435740 -76228613 + MIR SINE MIR 36 106 -102 673 233 111 12 chr1 166436412 166436584 -76227769 + MER5A DNA MER1_type 1 189 0 261 0 0 0 chr1 166436640 166436669 -76227684 + (T)n Simple_repeat Simple_repeat 1 29 0 235 267 69 20 chr1 166437063 166437164 -76227189 - MIR3 SINE MIR -5 203 98 202 269 0 0 chr1 166437177 166437229 -76227124 + L2 LINE L2 3213 3264 -8 201 319 88 21 chr1 166437264 166437450 -76226903 - MIR SINE MIR -57 205 10 689 286 5 10 chr1 166438098 166438294 -76226059 - MER91A DNA MER1_type 0 196 2 728 215 124 34 chr1 166438617 166438826 -76225527 - MIR SINE MIR -25 237 10 198 283 61 61 chr1 166440165 166440363 -76223990 - L3 LINE CR1 -731 846 649 185 302 0 0 chr1 166440499 166440552 -76223801 + MIR SINE MIR 75 127 -81 214 273 0 0 chr1 166441694 166441749 -76222604 + MIR SINE MIR 157 211 -51 336 266 195 13 chr1 166442526 166442680 -76221673 - Charlie8 DNA MER1_type -2137 280 99 620 213 37 18 chr1 166442924 166443088 -76221265 + MIR SINE MIR 96 262 0 217 313 16 0 chr1 166443529 166443593 -76220760 + MIR3 SINE MIR 129 193 -15 2219 113 0 7 chr1 166443697 166443990 -76220363 - AluSx SINE Alu -21 291 1 1898 165 0 7 chr1 166443995 166444298 -76220055 - AluJo SINE Alu -9 303 3 255 194 41 0 chr1 166446121 166446191 -76218162 + MIR SINE MIR 65 139 -69 416 281 68 0 chr1 166446628 166446774 -76217579 - MIR SINE MIR -10 252 97 977 240 114 25 chr1 166446789 166447147 -76217206 - MLT1I LTR MaLR -6 403 14 188 351 96 11 chr1 166448311 166448405 -76215948 + L2 LINE L2 3127 3228 -44 817 184 12 6 chr1 166448408 166448571 -76215782 + MER96B DNA MER1_type? 1 164 -253 632 250 57 2 chr1 166448571 166448766 -76215587 - L1MA9 LINE L1 -7 6293 6083 638 149 7 91 chr1 166448767 166448863 -76215490 - MER96B DNA MER1_type? -155 262 182 3246 62 0 0 chr1 166448863 166449264 -76215089 - L1PA7 LINE L1 0 6154 5754 638 149 7 91 chr1 166449264 166449321 -76215032 - MER96B DNA MER1_type? -235 182 122 316 256 26 45 chr1 166450007 166450148 -76214205 + MIR SINE MIR 20 157 -57 396 323 8 0 chr1 166450638 166450771 -76213582 - L3 LINE CR1 -47 1530 1397 184 366 39 13 chr1 166450799 166450952 -76213401 - L3 LINE CR1 -272 1305 1149 514 251 28 34 chr1 166451069 166451248 -76213105 + MER5B DNA MER1_type 1 178 0 403 285 77 41 chr1 166451376 166451584 -76212769 - MIR SINE MIR -37 225 4 1738 96 0 22 chr1 166452267 166452497 -76211856 + AluSq SINE Alu 1 225 -88 206 188 12 38 chr1 166453038 166453118 -76211235 + GA-rich Low_complexity Low_complexity 4 81 0 484 301 82 10 chr1 166453260 166453485 -76210868 + MIR SINE MIR 5 243 -19 289 229 26 182 chr1 166453587 166453818 -76210535 + MIR SINE MIR 49 243 -19 1971 191 30 55 chr1 166454330 166454802 -76209551 - MLT1C LTR MaLR 0 467 8 194 207 35 0 chr1 166454828 166454886 -76209467 - MIR SINE MIR -124 138 79 1484 186 72 62 chr1 166455765 166456153 -76208200 - MSTD LTR MaLR 0 396 5 475 240 19 0 chr1 166458312 166458416 -76205937 - MARNA DNA Mariner -349 237 132 192 238 86 67 chr1 166458520 166458625 -76205728 - L2 LINE L2 0 3272 3166 704 142 0 7 chr1 166459622 166459763 -76204590 + (GGAA)n Simple_repeat Simple_repeat 4 143 0 417 287 126 17 chr1 166460783 166460957 -76203396 - MIR SINE MIR 0 262 70 208 243 27 54 chr1 166462022 166462096 -76202257 - L2 LINE L2 -181 3091 3020 197 318 66 26 chr1 166463132 166463283 -76201070 + L2 LINE L2 2947 3103 -169 205 239 22 0 chr1 166463441 166463487 -76200866 + L2 LINE L2 3247 3293 -20 1402 208 138 22 chr1 166463508 166463869 -76200484 - MLT1I LTR MaLR 0 409 7 333 284 91 0 chr1 166463889 166463977 -76200376 + L2 LINE L2 3158 3253 -19 237 221 0 39 chr1 166464455 166464532 -76199821 + T-rich Low_complexity Low_complexity 4 77 0 216 0 0 0 chr1 166466038 166466062 -76198291 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 189 107 0 0 chr1 166466608 166466636 -76197717 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 483 286 168 23 chr1 166467329 166467549 -76196804 + MIR SINE MIR 7 258 -4 180 310 0 0 chr1 166468177 166468264 -76196089 + GA-rich Low_complexity Low_complexity 2 88 0 204 162 0 0 chr1 166469147 166469184 -76195169 + L2 LINE L2 3277 3313 0 249 256 143 36 chr1 166471065 166471233 -76193120 - MIR3 SINE MIR -2 206 21 731 286 99 7 chr1 166473028 166473322 -76191031 - L1ME LINE L1 -302 5819 5499 1285 335 142 16 chr1 166477986 166478909 -76185444 + L3 LINE CR1 1 1039 -538 514 239 34 35 chr1 166479027 166479242 -76185111 + L1ME LINE L1 5634 5849 -329 684 183 50 11 chr1 166479541 166479721 -76184632 - L1MB7 LINE L1 -1 6183 5997 1864 161 39 12 chr1 166479764 166480094 -76184259 - L1MC1 LINE L1 0 6333 5995 338 299 73 37 chr1 166480146 166480306 -76184047 + L3 LINE CR1 1230 1395 -182 443 298 95 16 chr1 166480306 166480548 -76183805 + MIR SINE MIR 2 262 0 211 345 55 28 chr1 166480559 166480587 -76183766 + L3 LINE CR1 1392 1418 -159 6463 11 0 1 chr1 166480587 166481304 -76183049 - L1PA2 LINE L1 0 6155 5440 211 345 55 28 chr1 166481304 166481420 -76182933 + L3 LINE CR1 1418 1540 -37 2190 221 57 61 chr1 166481500 166482092 -76182261 - MLT1E LTR MaLR 0 593 4 490 246 63 11 chr1 166483874 166484049 -76180304 + MIR3 SINE MIR 24 207 -1 180 0 0 0 chr1 166484513 166484533 -76179820 + (T)n Simple_repeat Simple_repeat 1 20 0 299 224 0 10 chr1 166485020 166485118 -76179235 + (TG)n Simple_repeat Simple_repeat 2 98 0 254 318 47 16 chr1 166486305 166486434 -76177919 + MIR SINE MIR 80 212 -50 2385 253 153 46 chr1 166486708 166488845 -76175508 - HAL1 LINE L1 -27 2480 90 1449 244 122 48 chr1 166488856 166489437 -76174916 - MLT1E3 LTR MaLR 0 624 1 246 316 0 0 chr1 166489447 166489504 -76174849 - HAL1 LINE L1 -2448 59 3 261 351 55 27 chr1 166490795 166491157 -76173196 + L2 LINE L2 2601 2976 -296 1133 48 30 0 chr1 166491157 166491325 -76173028 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 261 351 55 27 chr1 166491325 166491407 -76172946 + L2 LINE L2 2976 3054 -218 796 269 70 12 chr1 166493042 166493284 -76171069 + MIR SINE MIR 7 262 0 256 352 125 23 chr1 166493341 166493693 -76170660 + L2 LINE L2 1623 2010 -1304 740 267 97 42 chr1 166493719 166494030 -76170323 - MLT1I LTR MaLR 0 409 82 376 363 125 23 chr1 166494095 166494993 -76169360 + L2 LINE L2 2026 3018 -254 335 102 0 0 chr1 166495004 166495053 -76169300 - U5 snRNA snRNA -67 49 1 223 359 56 28 chr1 166495162 166495304 -76169049 + L2 LINE L2 3127 3272 0 841 175 58 29 chr1 166495741 166495912 -76168441 - MER45A DNA AcHobo -2 176 1 422 192 0 0 chr1 166496927 166497005 -76167348 - MER116 DNA Mariner -2 78 1 305 267 164 38 chr1 166497692 166497954 -76166399 - L2 LINE L2 -173 3099 2805 260 286 56 62 chr1 166500114 166500275 -76164078 + MER20B DNA MER1_type 30 189 -594 622 242 7 0 chr1 166502308 166502461 -76161892 + MIR SINE MIR 32 185 -77 2377 163 40 9 chr1 166502623 166503077 -76161276 - Charlie4a DNA MER1_type -40 468 1 287 269 54 0 chr1 166503136 166503193 -76161160 - L1ME4a LINE L1 0 6121 6069 1691 69 0 43 chr1 166503193 166503452 -76160901 + AluY SINE Alu 91 311 0 287 269 54 0 chr1 166503452 166503524 -76160829 - L1ME4a LINE L1 -52 6069 5985 2182 117 58 17 chr1 166503758 166504118 -76160235 - THE1C LTR MaLR 0 375 1 392 252 88 27 chr1 166505566 166505713 -76158640 - MIR SINE MIR -56 206 51 2519 202 72 4 chr1 166505815 166506315 -76158038 + MLT1F LTR MaLR 1 534 -8 297 285 73 22 chr1 166507840 166507977 -76156376 + L2 LINE L2 3128 3271 -1 409 246 81 57 chr1 166508396 166508613 -76155740 + LTR16A1 LTR ERVL 54 274 -176 188 333 13 13 chr1 166509095 166509173 -76155180 + L3 LINE CR1 1323 1400 -177 2740 103 3 8 chr1 166513524 166513901 -76150452 - THE1C LTR MaLR 0 375 1 217 253 236 39 chr1 166515064 166515246 -76149107 - L2 LINE L2 -556 2758 2541 22 0 0 0 chr1 166515563 166515585 -76148768 + AT_rich Low_complexity Low_complexity 1 22 0 1755 112 0 4 chr1 166516310 166516560 -76147793 - L1PB1 LINE L1 -1 6150 5902 282 56 0 0 chr1 166518162 166518198 -76146155 + (GA)n Simple_repeat Simple_repeat 1 36 0 204 289 62 31 chr1 166518625 166518722 -76145631 - MIR3 SINE MIR 0 208 109 812 280 17 8 chr1 166518726 166518965 -76145388 - MIR SINE MIR -10 252 12 213 39 0 0 chr1 166520804 166520830 -76143523 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 277 277 10 42 chr1 166521203 166521333 -76143020 - MER5B DNA MER1_type -25 164 28 501 17 0 0 chr1 166521802 166521860 -76142493 + (TC)n Simple_repeat Simple_repeat 1 58 0 223 325 142 0 chr1 166523555 166523675 -76140678 + L2 LINE L2 3133 3269 -3 1803 219 68 27 chr1 166524358 166524843 -76139510 - MLT1D LTR MaLR 0 505 1 388 260 0 0 chr1 166524897 166524993 -76139360 + MER5A DNA MER1_type 14 109 -80 262 300 11 30 chr1 166525753 166525863 -76138490 - MER5A DNA MER1_type -11 167 63 309 247 37 111 chr1 166525958 166526148 -76138205 - MLT1K LTR MaLR -16 572 397 215 348 62 18 chr1 166526813 166526925 -76137428 + L2 LINE L2 3146 3262 -10 180 0 0 0 chr1 166528616 166528636 -76135717 + (CATTT)n Simple_repeat Simple_repeat 1 20 0 1827 165 0 21 chr1 166528637 166528928 -76135425 - AluJb SINE Alu -25 287 3 1601 219 97 67 chr1 166529998 166530524 -76133829 - MLT1F LTR MaLR 0 542 1 2009 105 3 0 chr1 166530581 166530866 -76133487 - L1PA8 LINE L1 0 6172 5887 219 292 52 10 chr1 166530969 166531065 -76133288 - L2 LINE L2 -8 3305 3206 181 294 44 29 chr1 166531988 166532056 -76132297 + L2 LINE L2 3245 3313 0 1742 195 26 36 chr1 166532104 166532489 -76131864 - MLT1B LTR MaLR 0 390 10 2010 125 14 14 chr1 166532826 166533113 -76131240 - AluSx SINE Alu -25 287 1 574 254 70 0 chr1 166533126 166533268 -76131085 - MIR SINE MIR -70 192 41 1466 213 22 30 chr1 166533760 166534121 -76130232 - MLT1B LTR MaLR 0 390 33 455 276 46 0 chr1 166534497 166534649 -76129704 + MIR SINE MIR 98 256 -6 190 365 88 6 chr1 166536040 166536221 -76128132 + L2 LINE L2 2809 3004 -268 757 310 58 11 chr1 166536221 166536631 -76127722 - LTR16A LTR ERVL 0 457 9 453 246 0 131 chr1 166536644 166536843 -76127510 + MER5B DNA MER1_type 6 178 0 286 259 203 7 chr1 166536960 166537103 -76127250 + L2 LINE L2 3102 3272 0 241 162 29 0 chr1 166537174 166537242 -76127111 + GA-rich Low_complexity Low_complexity 3 72 0 2074 196 46 107 chr1 166537272 166537966 -76126387 - MLT1E1 LTR MaLR -1 653 2 197 283 33 0 chr1 166539554 166539614 -76124739 + MIR SINE MIR 198 259 -3 359 331 143 7 chr1 166540370 166540657 -76123696 - MLT1J2 LTR MaLR -61 389 64 2274 129 0 0 chr1 166540781 166541133 -76123220 - AluSx SINE Alu 0 312 1 559 277 40 0 chr1 166541988 166542136 -76122217 + MIR SINE MIR 98 251 -11 396 272 95 35 chr1 166542179 166542348 -76122005 + MIR SINE MIR 74 252 -10 381 291 45 0 chr1 166543496 166543606 -76120747 - L2 LINE L2 0 3272 3158 307 296 106 58 chr1 166543644 166543833 -76120520 + L2 LINE L2 3075 3272 0 216 0 0 0 chr1 166543841 166543865 -76120488 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 338 255 230 43 chr1 166543872 166544033 -76120320 + L3b LINE CR1 1210 1400 -183 325 244 13 76 chr1 166546031 166546256 -76118097 - L1MC5 LINE L1 -20 7941 7731 2574 59 3 0 chr1 166546964 166547267 -76117086 + AluY SINE Alu 1 304 -7 1409 123 19 0 chr1 166547515 166547726 -76116627 - L1PA11 LINE L1 -2 6172 5958 2058 229 62 71 chr1 166647726 166647904 -76016449 + L1ME1 LINE L1 5149 5327 -839 2150 93 0 10 chr1 166647904 166648194 -76016159 - AluY SINE Alu -24 287 1 2058 229 62 71 chr1 166648194 166648944 -76015409 + L1ME1 LINE L1 5327 6073 -93 2821 16 0 3 chr1 166648944 166649257 -76015096 - AluYb8 SINE Alu -6 312 1 2058 229 62 71 chr1 166649257 166649346 -76015007 + L1ME1 LINE L1 6073 6161 -5 448 283 0 0 chr1 166649952 166650051 -76014302 - MER58 DNA MER1_type -2315 105 7 27 0 0 0 chr1 166650193 166650220 -76014133 + AT_rich Low_complexity Low_complexity 1 27 0 1300 175 115 7 chr1 166650551 166650820 -76013533 - AluSg SINE Alu -12 298 1 921 215 65 109 chr1 166651407 166651605 -76012748 + MER34B LTR ERV1 1 206 -336 2037 113 0 63 chr1 166651605 166651923 -76012430 - AluSg SINE Alu -12 298 1 921 215 65 109 chr1 166651923 166652310 -76012043 + MER34B LTR ERV1 206 540 -2 1466 107 111 23 chr1 166652980 166653113 -76011240 + L1MC1 LINE L1 6049 6169 -164 3980 155 24 45 chr1 166653113 166653915 -76010438 + LTR1 LTR ERV1 1 785 0 1466 107 111 23 chr1 166653915 166654042 -76010311 + L1MC1 LINE L1 6169 6332 -1 298 153 42 0 chr1 166654099 166654171 -76010182 + CT-rich Low_complexity Low_complexity 3 77 0 836 188 24 6 chr1 166654192 166654357 -76009996 + MER5A DNA MER1_type 1 168 -21 1587 196 11 3 chr1 166654824 166655110 -76009243 + AluJb SINE Alu 23 310 -2 184 331 31 23 chr1 166655584 166655714 -76008639 + L2 LINE L2 1447 1577 -1737 235 319 121 17 chr1 166655749 166655865 -76008488 + L2 LINE L2 2004 2131 -1183 1408 196 19 48 chr1 166656236 166656276 -76008077 - AluJo SINE Alu 0 302 262 2298 99 3 0 chr1 166656276 166656578 -76007775 + AluSx SINE Alu 1 303 -9 1408 196 19 48 chr1 166656578 166656848 -76007505 - AluJo SINE Alu -40 262 1 2316 149 77 15 chr1 166656933 166657336 -76007017 + MSTA LTR MaLR 1 428 0 253 290 30 40 chr1 166657555 166657655 -76006698 - L3 LINE CR1 -145 1432 1334 547 272 48 53 chr1 166658908 166659114 -76005239 + MIR SINE MIR 20 224 -38 1931 123 43 0 chr1 166659845 166660122 -76004231 - AluSx SINE Alu -23 289 1 227 324 83 9 chr1 166660948 166661056 -76003297 + L2 LINE L2 3153 3268 -4 270 162 0 44 chr1 166661378 166661446 -76002907 + L1MC5 LINE L1 7610 7674 -287 11198 206 22 22 chr1 166661514 166661617 -76002736 + L1PA16 LINE L1 2442 2544 -3622 2293 103 7 0 chr1 166661617 166661919 -76002434 + AluSq SINE Alu 1 304 -9 11198 206 22 22 chr1 166661919 166665544 -75998809 + L1PA16 LINE L1 2544 6163 -3 25 0 0 0 chr1 166665553 166665578 -75998775 + AT_rich Low_complexity Low_complexity 1 25 0 638 185 84 0 chr1 166665783 166665902 -75998451 + FLAM_A SINE Alu 1 129 -4 332 182 73 27 chr1 166665902 166666012 -75998341 + L1M4 LINE L1 2819 2933 -3213 1637 273 75 9 chr1 166666083 166666835 -75997518 + L1M4 LINE L1 2900 3700 -2446 431 250 40 16 chr1 166666835 166666959 -75997394 - MIR SINE MIR -90 172 46 21 71 0 0 chr1 166667257 166667299 -75997054 + AT_rich Low_complexity Low_complexity 1 42 0 240 35 0 0 chr1 166667434 166667463 -75996890 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2334 97 7 0 chr1 166668421 166668730 -75995623 + AluSp SINE Alu 1 311 -2 3144 165 70 62 chr1 166669515 166670256 -75994097 + MER4E LTR ERV1 1 747 -32 310 183 0 0 chr1 166670262 166670322 -75994031 + MER4E LTR ERV1 707 766 0 278 316 57 21 chr1 166670508 166670813 -75993540 + L1ME3A LINE L1 1396 1636 -4894 301 281 82 41 chr1 166670831 166671002 -75993351 + HAL1 LINE L1 1431 1608 -899 1049 88 0 50 chr1 166671063 166671222 -75993131 + AluSg/x SINE Alu 156 306 -6 518 268 211 23 chr1 166671577 166672146 -75992207 + L1ME3A LINE L1 2442 3123 -3417 742 272 133 21 chr1 166672157 166672961 -75991392 + L1ME3A LINE L1 5447 6346 -218 1947 129 16 39 chr1 166673378 166673509 -75990844 + AluSc SINE Alu 1 133 -176 2155 78 7 11 chr1 166673509 166673820 -75990533 + AluY SINE Alu 1 310 0 1947 129 16 39 chr1 166673820 166673996 -75990357 + AluSc SINE Alu 133 302 -7 40 0 0 0 chr1 166674305 166674345 -75990008 + AT_rich Low_complexity Low_complexity 1 40 0 1059 246 22 97 chr1 166675245 166675350 -75989003 + Charlie1a DNA MER1_type 3 114 -2647 1734 164 20 7 chr1 166675350 166675648 -75988705 + AluJb SINE Alu 1 302 -10 1059 246 22 97 chr1 166675648 166675944 -75988409 + Charlie1a DNA MER1_type 114 374 -1081 995 138 44 12 chr1 166675955 166676115 -75988238 + MER61B LTR ERV1 261 425 0 350 250 45 0 chr1 166676115 166676203 -75988150 + MER61B-int LTR ERV1 1 92 -5125 2627 126 23 39 chr1 166676514 166676999 -75987354 + MER61B-int LTR ERV1 364 840 -4377 27075 99 33 34 chr1 166676999 166677536 -75986817 + MER61B-int LTR ERV1 958 1494 -3723 2215 123 0 0 chr1 166677536 166677837 -75986516 + AluSx SINE Alu 1 301 -11 27075 99 33 34 chr1 166677837 166679454 -75984899 + MER61B-int LTR ERV1 1494 3112 -2105 294 29 0 0 chr1 166679454 166679489 -75984864 + (TC)n Simple_repeat Simple_repeat 2 36 0 27075 99 33 34 chr1 166679489 166680052 -75984301 + MER61B-int LTR ERV1 3112 3675 -1542 2292 84 7 0 chr1 166680052 166680351 -75984002 + AluSq SINE Alu 1 301 -12 27075 99 33 34 chr1 166680351 166681899 -75982454 + MER61B-int LTR ERV1 3675 5217 0 2060 322 0 23 chr1 166681899 166682334 -75982019 + MER61B LTR ERV1 1 425 0 552 234 142 135 chr1 166682373 166682399 -75981954 + MER21B LTR ERV1 17 41 -822 4388 124 17 19 chr1 166682399 166683091 -75981262 + LTR8 LTR ERV1 1 691 0 552 234 142 135 chr1 166683091 166683465 -75980888 + MER21B LTR ERV1 41 420 -443 * 985 192 0 0 chr1 166683462 166683629 -75980724 - MER46A DNA MER2_type -69 167 1 305 76 0 91 chr1 166683629 166683695 -75980658 + L1MD1 LINE L1 6182 6241 -1 320 290 32 8 chr1 166684045 166684169 -75980184 + L1MC4a LINE L1 4893 5019 -1127 2696 254 112 32 chr1 166684361 166685560 -75978793 + L1MC4a LINE L1 5254 6547 -1261 4179 103 54 41 chr1 166685820 166685963 -75978390 + LTR8 LTR ERV1 1 141 -550 1890 158 0 0 chr1 166685963 166686278 -75978075 - AluSx SINE Alu 0 315 1 4179 103 54 41 chr1 166686278 166686815 -75977538 + LTR8 LTR ERV1 141 691 0 1237 236 102 10 chr1 166687130 166687637 -75976716 + L1MC4a LINE L1 6600 7149 -659 * 1842 204 64 35 chr1 166687633 166688119 -75976234 + L1MC4 LINE L1 7308 7807 -235 228 303 129 13 chr1 166688184 166688494 -75975859 - L1ME LINE L1 -238 5883 5538 2359 89 0 0 chr1 166688778 166689081 -75975272 + AluSc SINE Alu 1 303 -6 592 262 88 35 chr1 166690195 166690467 -75973886 + L2 LINE L2 2750 3033 -280 251 264 0 81 chr1 166690483 166690570 -75973783 + L2 LINE L2 3180 3259 -54 580 278 25 8 chr1 166690655 166690818 -75973535 + MIR SINE MIR 1 163 -67 2231 89 3 3 chr1 166690818 166691109 -75973244 + AluSc SINE Alu 1 291 -18 243 121 0 0 chr1 166691228 166691261 -75973092 + Alu SINE Alu 251 283 -19 29 0 0 0 chr1 166691381 166691410 -75972943 + AT_rich Low_complexity Low_complexity 1 29 0 2161 100 0 4 chr1 166691421 166691702 -75972651 - AluSc SINE Alu -29 280 1 482 138 0 101 chr1 166692414 166692523 -75971830 - L1PA10 LINE L1 0 6168 6071 5704 142 35 16 chr1 166692527 166693604 -75970749 - L1MA4 LINE L1 -2 6298 5202 233 260 27 0 chr1 166693633 166693706 -75970647 - L1M4 LINE L1 -1998 4148 4074 2073 242 52 22 chr1 166693720 166694274 -75970079 - MER90 LTR ERV1 -1 574 4 1142 199 0 0 chr1 166694716 166694912 -75969441 - AluJb SINE Alu -30 282 87 1032 250 20 54 chr1 166694913 166695265 -75969088 + L1MC4 LINE L1 7703 8042 0 2145 107 7 3 chr1 166695277 166695576 -75968777 + AluSx SINE Alu 1 300 -12 2001 112 17 7 chr1 166695577 166695873 -75968480 + AluSc SINE Alu 1 299 -10 345 120 0 9 chr1 166696245 166696325 -75968028 - Alu SINE Alu -258 45 3 1639 67 9 0 chr1 166696376 166696599 -75967754 + L1P LINE L1 4476 4700 -1446 251 300 171 14 chr1 166696935 166697075 -75967278 - MIR SINE MIR -2 260 99 185 340 58 29 chr1 166697390 166697493 -75966860 + L2 LINE L2 3169 3274 -39 2363 76 0 3 chr1 166698261 166698564 -75965789 - AluY SINE Alu -9 302 1 6804 70 6 0 chr1 166698635 166700305 -75964048 + L1PA6 LINE L1 4476 6154 0 685 245 121 35 chr1 166700306 166700620 -75963733 + L1ME2 LINE L1 5824 6164 0 25 0 0 0 chr1 166700623 166700648 -75963705 + AT_rich Low_complexity Low_complexity 1 25 0 2232 100 3 0 chr1 166700751 166701051 -75963302 + AluSp SINE Alu 1 301 -12 1784 126 30 0 chr1 166701059 166701376 -75962977 + AluSg SINE Alu 1 325 0 200 31 62 0 chr1 166701550 166701582 -75962771 + A-rich Low_complexity Low_complexity 2 35 0 1280 197 106 14 chr1 166701901 166702185 -75962168 + AluJb SINE Alu 2 311 -1 401 267 21 70 chr1 166702834 166703021 -75961332 + MIR3 SINE MIR 21 198 -10 2192 105 0 0 chr1 166703417 166703736 -75960617 + AluSx SINE Alu 1 319 0 402 299 96 6 chr1 166703917 166704074 -75960279 + MIR SINE MIR 86 256 -6 1309 106 75 30 chr1 166704169 166704285 -75960068 + L1MA4A LINE L1 6027 6136 -167 1359 187 56 8 chr1 166704285 166704597 -75959756 + AluJo SINE Alu 1 325 0 1309 106 75 30 chr1 166704597 166704744 -75959609 + L1MA4A LINE L1 6136 6303 0 213 39 0 0 chr1 166705443 166705469 -75958884 + (CA)n Simple_repeat Simple_repeat 1 26 0 633 277 29 34 chr1 166705601 166705807 -75958546 - MIR SINE MIR -53 209 5 1713 101 4 27 chr1 166705993 166706250 -75958103 + AluSx SINE Alu 51 301 -11 48 0 0 0 chr1 166707019 166707067 -75957286 + AT_rich Low_complexity Low_complexity 1 48 0 261 254 0 0 chr1 166707256 166707315 -75957038 - MIR SINE MIR -6 256 198 401 183 0 24 chr1 166707317 166707399 -75956954 - AluJ/FRAM SINE Alu -5 307 228 2340 67 0 0 chr1 166707683 166707967 -75956386 + AluY SINE Alu 17 300 -11 309 318 28 0 chr1 166708083 166708190 -75956163 + MER46C DNA MER2_type 164 273 -65 7446 141 36 14 chr1 166710036 166712366 -75951987 - L1MA2 LINE L1 0 6304 3927 2233 100 10 0 chr1 166712366 166712666 -75951687 - AluSc SINE Alu -6 303 1 7446 141 36 14 chr1 166712666 166712732 -75951621 - L1MA2 LINE L1 -2377 3927 3864 264 200 89 44 chr1 166712902 166712992 -75951361 + L2 LINE L2 3176 3269 -44 4348 173 83 12 chr1 166712999 166713476 -75950877 - L1MA6 LINE L1 0 6300 5858 357 82 0 0 chr1 166713476 166713525 -75950828 + (TG)n Simple_repeat Simple_repeat 2 50 0 4348 173 83 12 chr1 166713525 166713979 -75950374 - L1MA6 LINE L1 -442 5858 5304 22 56 0 0 chr1 166714912 166714948 -75949405 + AT_rich Low_complexity Low_complexity 1 36 0 377 290 65 69 chr1 166717853 166718084 -75946269 + L2 LINE L2 2538 2767 -547 267 319 57 43 chr1 166718052 166718193 -75946160 + L2 LINE L2 2963 3105 -208 * 672 155 29 0 chr1 166718205 166718308 -75946045 - Tigger3(Golem) DNA MER2_type -1 3028 2923 367 214 0 19 chr1 166718453 166718556 -75945797 + (TA)n Simple_repeat Simple_repeat 2 102 0 317 214 34 34 chr1 166718558 166718647 -75945706 - L1MC4 LINE L1 -1340 6702 6614 254 211 39 0 chr1 166718647 166718699 -75945654 + (TACG)n Simple_repeat Simple_repeat 2 55 0 268 298 0 21 chr1 166718700 166718794 -75945559 - L1MC4 LINE L1 -1346 6696 6605 514 188 0 0 chr1 166718884 166718964 -75945389 - Tigger3(Golem) DNA MER2_type -2949 80 1 346 231 154 0 chr1 166719039 166719130 -75945223 + L2 LINE L2 3191 3295 -18 823 119 8 24 chr1 166722401 166722527 -75941826 - FLAM_C SINE Alu -14 129 6 321 267 137 56 chr1 166722691 166722961 -75941392 - L1ME LINE L1 -298 5823 5532 592 229 38 23 chr1 166723050 166723181 -75941172 - MIR SINE MIR -127 135 3 232 325 56 44 chr1 166723317 166723477 -75940876 - L2 LINE L2 -18 3295 3134 204 336 0 64 chr1 166723575 166723685 -75940668 - L2 LINE L2 -253 3019 2917 240 377 0 0 chr1 166723985 166724054 -75940299 + L2 LINE L2 349 417 -2897 246 236 94 66 chr1 166724298 166724404 -75939949 + L2 LINE L2 722 830 -2484 4764 132 34 48 chr1 166724525 166725442 -75938911 + L1PA16 LINE L1 5254 6157 -9 303 218 13 0 chr1 166725703 166725781 -75938572 + MER116 DNA Mariner 2 80 0 2061 115 3 0 chr1 166726704 166726991 -75937362 + AluSx SINE Alu 1 288 -24 1676 186 13 13 chr1 166727190 166727496 -75936857 - AluJb SINE Alu -6 306 1 1135 187 69 21 chr1 166727606 166727984 -75936369 + L1MDa LINE L1 2289 2677 -3863 4297 253 106 33 chr1 166728044 166728589 -75935764 + L1MDa LINE L1 3063 3566 -2998 315 49 0 0 chr1 166728589 166728630 -75935723 + (GA)n Simple_repeat Simple_repeat 1 41 0 4297 253 106 33 chr1 166728630 166729139 -75935214 + L1MDa LINE L1 3566 4036 -2528 305 200 136 100 chr1 166729139 166729249 -75935104 + MER81 DNA DNA 1 114 0 4297 253 106 33 chr1 166729249 166731254 -75933099 + L1MDa LINE L1 4036 6344 -220 1243 271 110 38 chr1 166731780 166732281 -75932072 + MLT1F LTR MaLR 6 542 0 557 100 0 0 chr1 166733373 166733453 -75930900 - AluY SINE Alu -19 292 213 21 0 0 0 chr1 166733854 166733875 -75930478 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 166734366 166734394 -75929959 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr1 166734550 166734581 -75929772 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 166735270 166735292 -75929061 + AT_rich Low_complexity Low_complexity 1 22 0 375 324 54 11 chr1 166735451 166735611 -75928742 - MER5A DNA MER1_type -14 167 2 206 276 13 40 chr1 166736600 166736676 -75927677 - MIR3 SINE MIR -11 197 124 1227 62 17 6 chr1 166736709 166736887 -75927466 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1221 170 129 17 chr1 166737501 166737742 -75926611 + AluJb SINE Alu 27 294 -18 1873 142 21 0 chr1 166737917 166738206 -75926147 - AluSg SINE Alu -15 295 1 386 323 15 8 chr1 166738449 166738582 -75925771 + Charlie2 DNA MER1_type 8 141 -2641 225 333 13 0 chr1 166738697 166738772 -75925581 + Charlie2 DNA MER1_type 226 301 -2561 465 155 0 0 chr1 166738791 166738862 -75925491 + Charlie2 DNA MER1_type 1856 1926 -936 4742 168 59 8 chr1 166738875 166739758 -75924595 - L1P LINE L1 -1814 4332 3405 3425 106 20 4 chr1 166739758 166740268 -75924085 + L1PA13 LINE L1 5646 6163 0 32 26 0 0 chr1 166740371 166740410 -75923943 + AT_rich Low_complexity Low_complexity 1 39 0 206 121 0 0 chr1 166740787 166740820 -75923533 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1025 254 63 65 chr1 166740834 166742382 -75921971 + L1MEc LINE L1 1074 2676 -3539 1943 137 14 0 chr1 166742382 166742667 -75921686 + AluSx SINE Alu 1 289 -23 1025 254 63 65 chr1 166742667 166742872 -75921481 + L1MEc LINE L1 2676 2880 -3335 460 176 20 10 chr1 166742843 166742945 -75921408 + L1ME LINE L1 38 140 -6256 * 1446 207 49 14 chr1 166742925 166743292 -75921061 + L1ME LINE L1 497 876 -5520 1858 259 100 26 chr1 166743295 166744094 -75920259 + L1ME LINE L1 1116 1998 -4398 2238 121 0 3 chr1 166744094 166744407 -75919946 - AluSx SINE Alu 0 312 1 1858 259 100 26 chr1 166744407 166744558 -75919795 + L1ME LINE L1 1998 2136 -4260 252 237 0 0 chr1 166744552 166744611 -75919742 + L1ME LINE L1 2837 2895 -3320 * 351 240 69 46 chr1 166744635 166744887 -75919466 + L1ME LINE L1 5324 5566 -669 411 103 0 0 chr1 166745731 166745799 -75918554 - L1PA8 LINE L1 0 6172 6105 2385 79 0 7 chr1 166745799 166746271 -75918082 + L1PA8A LINE L1 5055 5524 -607 1086 283 89 40 chr1 166746284 166746758 -75917595 - HAL1 LINE L1 -1995 512 16 1193 148 65 110 chr1 166746773 166747083 -75917270 + AluJo SINE Alu 1 296 -6 761 159 0 23 chr1 166748842 166748974 -75915379 - FLAM_C SINE Alu -1 142 14 615 282 62 35 chr1 166749776 166750003 -75914350 + MLT1L LTR MaLR 3 235 -380 463 276 138 32 chr1 166750051 166750297 -75914056 + MLT1L LTR MaLR 344 615 0 278 310 31 23 chr1 166750337 166750494 -75913859 - MIR SINE MIR -26 182 32 437 0 0 19 chr1 166750820 166750874 -75913479 + (TG)n Simple_repeat Simple_repeat 2 54 0 1777 120 36 0 chr1 166750903 166751188 -75913165 + AluSx SINE Alu 25 318 0 1670 171 7 0 chr1 166751582 166751891 -75912462 - AluJb SINE Alu 0 311 1 1642 190 3 3 chr1 166752121 166752416 -75911937 + AluJo SINE Alu 1 295 -17 200 231 19 19 chr1 166752816 166752868 -75911485 + L2 LINE L2 3181 3232 -40 360 0 0 0 chr1 166752873 166752913 -75911440 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 794 306 47 13 chr1 166753177 166753409 -75910944 + MIR SINE MIR 2 241 -21 2251 95 0 3 chr1 166753529 166753823 -75910530 - AluSg SINE Alu -17 293 1 540 160 0 0 chr1 166753893 166753993 -75910360 + GA-rich Low_complexity Low_complexity 4 103 0 222 37 0 0 chr1 166753998 166754025 -75910328 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 1076 229 93 28 chr1 166754364 166754835 -75909518 + Charlie2 DNA MER1_type 1857 2358 -504 11952 106 32 13 chr1 166754919 166756310 -75908043 - Tigger1 DNA MER2_type -1 2417 981 2436 82 0 0 chr1 166756310 166756615 -75907738 + AluY SINE Alu 1 305 -6 11952 106 32 13 chr1 166756615 166757042 -75907311 - Tigger1 DNA MER2_type -1437 981 564 770 160 56 21 chr1 166757068 166757212 -75907141 - Tigger1 DNA MER2_type -2269 149 1 906 246 31 71 chr1 166757212 166757527 -75906826 + Charlie2 DNA MER1_type 2433 2726 -136 1552 196 29 7 chr1 166757527 166757808 -75906545 - AluJo SINE Alu -25 287 1 906 246 31 71 chr1 166757808 166757940 -75906413 + Charlie2 DNA MER1_type 2726 2862 0 2214 112 3 10 chr1 166758497 166758809 -75905544 + AluSg SINE Alu 1 310 0 1808 164 10 17 chr1 166758820 166759119 -75905234 + AluJb SINE Alu 1 297 -15 2133 130 3 0 chr1 166759172 166759480 -75904873 + AluSx SINE Alu 1 309 -3 2226 138 0 21 chr1 166760807 166761141 -75903212 - MER1B DNA MER1_type 0 339 13 26 30 0 0 chr1 166761174 166761207 -75903146 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 166761339 166761360 -75902993 + AT_rich Low_complexity Low_complexity 1 21 0 1672 180 37 0 chr1 166762008 166762303 -75902050 + AluJo SINE Alu 6 311 -1 542 271 144 21 chr1 166762313 166762597 -75901756 + L1ME4a LINE L1 5495 5813 -308 201 167 0 0 chr1 166762802 166762838 -75901515 + A-rich Low_complexity Low_complexity 1 36 0 312 261 127 25 chr1 166762838 166763083 -75901270 + L1ME4a LINE L1 5852 6121 0 711 165 160 105 chr1 166763771 166763971 -75900382 + AluJb SINE Alu 86 296 -16 261 111 0 0 chr1 166764036 166764072 -75900281 + Alu SINE Alu 1 36 -264 1333 100 0 6 chr1 166764175 166764355 -75899998 + AluSq SINE Alu 105 283 -30 392 161 0 62 chr1 166764390 166764471 -75899882 + AluS SINE Alu 2 77 -225 27 29 0 0 chr1 166764471 166764505 -75899848 + AT_rich Low_complexity Low_complexity 1 34 0 2068 122 7 3 chr1 166764510 166764805 -75899548 + AluSx SINE Alu 1 296 -16 1666 181 7 10 chr1 166764954 166765253 -75899100 + AluJb SINE Alu 1 298 -14 238 284 95 32 chr1 166765662 166765757 -75898596 + L2 LINE L2 3172 3272 0 21 0 0 0 chr1 166766035 166766056 -75898297 + AT_rich Low_complexity Low_complexity 1 21 0 2364 64 3 16 chr1 166767065 166767378 -75896975 + AluSc SINE Alu 1 309 0 227 244 104 78 chr1 166767771 166767886 -75896467 - MIR SINE MIR -128 134 17 956 199 52 24 chr1 166767894 166768105 -75896248 + MER20 DNA MER1_type 2 218 -1 3984 139 42 12 chr1 166768913 166769580 -75894773 + L1MB2 LINE L1 5451 6137 -34 37 16 0 48 chr1 166769601 166769664 -75894689 + AT_rich Low_complexity Low_complexity 1 60 0 521 270 167 11 chr1 166770724 166770898 -75893455 - MIR SINE MIR -59 203 3 617 274 80 75 chr1 166770979 166771377 -75892976 + MLT1J LTR MaLR 112 511 0 827 175 8 143 chr1 166771813 166772065 -75892288 + AluJb SINE Alu 86 303 -9 1032 242 112 12 chr1 166772093 166772423 -75891930 - L2 LINE L2 -527 2787 2425 969 160 0 7 chr1 166772637 166772787 -75891566 - AluJb SINE Alu -20 292 144 301 269 0 32 chr1 166772798 166772891 -75891462 - L1MC4 LINE L1 -1339 6703 6614 252 0 0 0 chr1 166772907 166772935 -75891418 + (TG)n Simple_repeat Simple_repeat 2 29 0 684 164 0 0 chr1 166772938 166773042 -75891311 - FLAM_C SINE Alu -28 115 12 528 321 75 0 chr1 166773094 166773277 -75891076 + MIR SINE MIR 40 235 -27 1576 219 14 30 chr1 166773344 166773710 -75890643 + MLT1A1 LTR MaLR 1 360 -5 1633 146 56 7 chr1 166774026 166774314 -75890039 + Tigger1 DNA MER2_type 78 379 -2039 243 103 0 0 chr1 166774329 166774368 -75889985 + (CA)n Simple_repeat Simple_repeat 2 40 0 590 279 84 25 chr1 166774369 166774727 -75889626 + L1ME1 LINE L1 1200 1578 -4848 814 256 28 4 chr1 166774947 166775201 -75889152 + L1ME1 LINE L1 1775 2034 -4573 1364 168 4 13 chr1 166775623 166775861 -75888492 - MER46A DNA MER2_type 0 236 1 187 273 127 27 chr1 166776611 166776721 -75887632 - MIR SINE MIR -56 206 86 23 33 0 0 chr1 166777436 166777466 -75886887 + AT_rich Low_complexity Low_complexity 1 30 0 3047 180 48 57 chr1 166778637 166779448 -75884905 + L1MB7 LINE L1 5349 6152 -32 962 232 54 56 chr1 166779532 166779869 -75884484 + L1ME1 LINE L1 2169 2505 -4102 2142 117 0 0 chr1 166779869 166780167 -75884186 + AluSc SINE Alu 1 298 -11 962 232 54 56 chr1 166780167 166780306 -75884047 + L1ME1 LINE L1 2501 2645 -3958 1851 151 3 39 chr1 166780306 166780618 -75883735 + AluJb SINE Alu 1 301 -11 339 152 38 0 chr1 166780623 166780702 -75883651 + GA-rich Low_complexity Low_complexity 2 83 0 1284 248 107 10 chr1 166780703 166781208 -75883145 + L1ME1 LINE L1 2597 3150 -3276 1883 141 62 0 chr1 166781210 166781516 -75882837 + L1PA16 LINE L1 5806 6130 -36 1092 249 87 123 chr1 166781525 166782343 -75882010 + L1ME1 LINE L1 3140 3927 -2499 790 154 0 22 chr1 166782347 166782518 -75881835 + FLAM_C SINE Alu 1 168 0 590 219 59 71 chr1 166782579 166782748 -75881605 + MLT1B LTR MaLR 1 167 -223 1014 190 5 32 chr1 166782803 166783024 -75881329 + AluJo SINE Alu 85 299 -13 898 139 7 0 chr1 166783025 166783162 -75881191 + MLT1B LTR MaLR 253 390 0 3039 237 69 37 chr1 166783293 166784625 -75879728 + L1ME1 LINE L1 4448 6023 -591 2022 136 0 3 chr1 166784625 166784927 -75879426 + AluY SINE Alu 1 301 -10 3039 237 69 37 chr1 166784927 166785539 -75878814 + L1ME1 LINE L1 6023 6614 0 898 254 42 0 chr1 166785595 166785812 -75878541 + MIR SINE MIR 11 236 -26 301 381 40 17 chr1 166785974 166786147 -75878206 - MLT1K LTR MaLR -342 246 70 260 191 7 0 chr1 166786496 166786543 -75877810 - AluJb SINE Alu -190 112 71 225 265 41 0 chr1 166786530 166786579 -75877774 - FRAM/FAM SINE Alu -116 50 1 * 1255 159 0 63 chr1 166786602 166786854 -75877499 + MER46A DNA MER2_type 1 236 0 23 33 0 0 chr1 166786955 166786985 -75877368 + AT_rich Low_complexity Low_complexity 1 30 0 2075 131 7 0 chr1 166787775 166788073 -75876280 - AluJb SINE Alu -8 304 5 734 180 0 8 chr1 166788147 166788275 -75876078 + FLAM_A SINE Alu 8 134 -8 2580 34 0 0 chr1 166788644 166788942 -75875411 + AluY SINE Alu 1 298 -13 200 326 147 11 chr1 166789711 166789806 -75874547 + MIR SINE MIR 18 125 -83 2022 91 0 28 chr1 166790233 166790519 -75873834 + AluSx SINE Alu 8 285 -27 24 67 0 0 chr1 166792835 166792880 -75871473 + GC_rich Low_complexity Low_complexity 1 45 0 1528 114 29 82 chr1 166793745 166794051 -75870302 + AluJb SINE Alu 4 293 -19 1612 167 52 25 chr1 166794141 166794385 -75869968 - MER65A LTR ERV1 -44 401 142 2202 122 0 0 chr1 166794385 166794681 -75869672 + AluSx SINE Alu 1 296 -16 1612 167 52 25 chr1 166794681 166794801 -75869552 - MER65A LTR ERV1 -303 142 27 695 209 0 73 chr1 166794939 166795116 -75869237 - FAM SINE Alu -8 167 4 218 344 0 16 chr1 166795391 166795455 -75868898 + L2 LINE L2 3163 3225 -47 375 204 73 10 chr1 166795758 166795899 -75868454 - MER5A DNA MER1_type -3 186 1 2155 118 0 35 chr1 166795904 166796219 -75868134 + AluSx SINE Alu 1 304 -8 2052 117 0 4 chr1 166796273 166796547 -75867806 + AluSx SINE Alu 1 273 -39 1205 189 166 14 chr1 166796577 166796921 -75867432 + MSTD LTR MaLR 1 396 0 2338 105 0 0 chr1 166797697 166798002 -75866351 + AluSg SINE Alu 1 305 -5 1375 197 60 11 chr1 166798020 166798304 -75866049 + AluJo SINE Alu 1 298 -14 949 157 45 0 chr1 166798956 166799134 -75865219 - MER46A DNA MER2_type -4 232 47 716 186 14 0 chr1 166800202 166800342 -75864011 + MLT1B LTR MaLR 249 390 0 809 188 0 0 chr1 166800707 166800840 -75863513 + FLAM_A SINE Alu 1 133 0 417 239 151 112 chr1 166800921 166801142 -75863211 + MLT1K LTR MaLR 14 225 -363 234 0 0 0 chr1 166801142 166801168 -75863185 + (TTG)n Simple_repeat Simple_repeat 2 27 0 417 239 151 112 chr1 166801168 166801304 -75863049 + MLT1K LTR MaLR 225 354 -234 1575 143 23 97 chr1 166801304 166801646 -75862707 + AluYb8 SINE Alu 1 317 -1 417 239 151 112 chr1 166801646 166801777 -75862576 + MLT1K LTR MaLR 354 522 -66 223 330 80 23 chr1 166801848 166801936 -75862417 + L2 LINE L2 3177 3269 -3 205 167 0 0 chr1 166802306 166802342 -75862011 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 607 260 121 13 chr1 166802355 166802586 -75861767 - MLT1H LTR MaLR -12 537 282 1515 209 87 3 chr1 166802683 166803052 -75861301 - MER92B LTR ERV1 0 636 237 274 81 0 0 chr1 166803129 166803166 -75861187 + U7 snRNA snRNA 2 38 -25 992 171 11 23 chr1 166803413 166803588 -75860765 - FAM SINE Alu -2 173 1 334 208 0 14 chr1 166803644 166803716 -75860637 + L1MCa LINE L1 22 92 -6334 1119 195 4 34 chr1 166803746 166803957 -75860396 - MER8 DNA MER2_type -9 230 25 2003 139 50 8 chr1 166803957 166804317 -75860036 + THE1C LTR MaLR 1 375 0 1119 195 4 34 chr1 166804317 166804341 -75860012 - MER8 DNA MER2_type -214 25 2 320 327 37 9 chr1 166804783 166805000 -75859353 - L1M4 LINE L1 -2330 3816 3594 306 253 72 114 chr1 166805041 166805151 -75859202 - L1M4 LINE L1 -2681 3465 3369 1904 149 43 0 chr1 166805151 166805433 -75858920 - AluSg SINE Alu -16 294 1 306 253 72 114 chr1 166805433 166805559 -75858794 - L1M4 LINE L1 -2777 3369 3239 641 160 33 73 chr1 166805717 166805867 -75858486 - AluJb SINE Alu -1 311 168 3054 137 14 10 chr1 166805874 166806372 -75857981 + MER41B LTR ERV1 3 505 -130 1965 122 0 7 chr1 166806372 166806669 -75857684 - AluSx SINE Alu 0 312 35 3054 137 14 10 chr1 166806669 166806687 -75857666 + MER41B LTR ERV1 505 521 -114 364 171 26 0 chr1 166806691 166806767 -75857586 - MER51A LTR ERV1 -87 547 470 740 84 9 0 chr1 166806767 166806874 -75857479 + MER41B LTR ERV1 512 619 -16 697 208 31 0 chr1 166806875 166807005 -75857348 - AluJb SINE Alu -130 182 49 514 284 113 78 chr1 166807016 166807544 -75856809 - L1MEd LINE L1 -1064 1426 853 489 230 61 7 chr1 166807633 166807781 -75856572 - L1MA10 LINE L1 -2 6332 6177 2087 137 13 19 chr1 166808519 166808833 -75855520 + AluJo SINE Alu 1 312 0 2161 137 0 3 chr1 166809355 166809668 -75854685 + AluSx SINE Alu 1 312 0 1880 156 87 81 chr1 166809697 166810014 -75854339 + LTR54 LTR ERV1 1 324 -186 953 183 24 0 chr1 166810014 166810178 -75854175 + FAM SINE Alu 1 168 -7 1880 156 87 81 chr1 166810178 166810367 -75853986 + LTR54 LTR ERV1 324 510 0 1084 199 141 93 chr1 166810424 166810963 -75853390 + L1M4b LINE L1 568 1213 -5646 333 0 0 0 chr1 166810963 166811000 -75853353 + (TG)n Simple_repeat Simple_repeat 2 38 0 1084 199 141 93 chr1 166811000 166811180 -75853173 + L1M4b LINE L1 1213 1383 -5476 3959 149 22 22 chr1 166811180 166811753 -75852600 + MER50 LTR ERV1 1 577 -157 1983 136 4 0 chr1 166811753 166812053 -75852300 - AluSx SINE Alu 0 301 1 3959 149 22 22 chr1 166812053 166812189 -75852164 + MER50 LTR ERV1 576 711 -23 1080 178 77 24 chr1 166812189 166812359 -75851994 + L1M4b LINE L1 1379 1572 -5287 2124 125 0 19 chr1 166812359 166812670 -75851683 + AluSx SINE Alu 1 305 -7 1080 178 77 24 chr1 166812670 166812786 -75851567 + L1M4b LINE L1 1572 1680 -5179 245 239 30 0 chr1 166812816 166812883 -75851470 + L1M4b LINE L1 1658 1726 -5233 817 183 13 0 chr1 166812884 166813037 -75851316 + MER6B DNA MER2_type 2 156 -54 1367 211 68 75 chr1 166813085 166813526 -75850827 - LTR54 LTR ERV1 -72 438 1 1712 252 50 8 chr1 166813526 166813953 -75850400 - L1MEc LINE L1 -3154 3061 2653 1668 180 9 25 chr1 166813953 166814269 -75850084 - AluJo SINE Alu -1 311 1 1712 252 50 8 chr1 166814269 166814655 -75849698 - L1MEc LINE L1 -3562 2653 2152 4904 216 91 9 chr1 166814739 166815902 -75848451 + L1PA13 LINE L1 3 1261 -5526 2668 161 9 0 chr1 166815925 166816373 -75847980 + L1PA13 LINE L1 1410 1861 -4926 2031 100 148 6 chr1 166816373 166816724 -75847629 + MSTA LTR MaLR 1 401 -27 20187 79 7 3 chr1 166817493 166820373 -75843980 - L1PA7 LINE L1 0 6154 3257 2478 84 0 0 chr1 166820373 166820684 -75843669 - AluY SINE Alu 0 311 1 20187 79 7 3 chr1 166820684 166821409 -75842944 - L1PA7 LINE L1 -2897 3257 2537 2278 147 55 14 chr1 166821409 166821844 -75842509 + L1MC3 LINE L1 7108 7560 -225 2065 123 0 3 chr1 166821852 166822205 -75842148 - AluSx SINE Alu 0 352 1 5462 233 57 69 chr1 166822212 166822925 -75841428 - L1MCb LINE L1 -787 5777 5057 2436 64 27 0 chr1 166822925 166823223 -75841130 + AluY SINE Alu 1 306 -5 5462 233 57 69 chr1 166823223 166823696 -75840657 - L1MCb LINE L1 -1507 5057 4580 360 0 0 0 chr1 166823696 166823736 -75840617 + (TG)n Simple_repeat Simple_repeat 2 41 0 5462 233 57 69 chr1 166823736 166823980 -75840373 - L1MCb LINE L1 -1984 4580 4335 1732 185 3 7 chr1 166823980 166824282 -75840071 - AluJo SINE Alu -11 301 1 5462 233 57 69 chr1 166824282 166825023 -75839330 - L1MCb LINE L1 -2229 4335 3587 866 159 0 0 chr1 166825023 166825155 -75839198 + FLAM_C SINE Alu 2 133 0 5462 233 57 69 chr1 166825155 166826668 -75837685 - L1MCb LINE L1 -2977 3587 2057 3844 163 17 28 chr1 166826668 166827381 -75836972 - MER44D DNA MER2_type 0 705 1 5462 233 57 69 chr1 166827381 166828491 -75835862 - L1MCb LINE L1 -4507 2057 935 2860 191 93 35 chr1 166828491 166829234 -75835119 + LTR48 LTR ERV1 1 786 -1 5462 233 57 69 chr1 166829234 166829567 -75834786 - L1MCb LINE L1 -5629 935 599 293 128 0 0 chr1 166829567 166829614 -75834739 - U2 snRNA snRNA -141 47 1 5462 233 57 69 chr1 166829614 166830107 -75834246 - L1MCb LINE L1 -5965 599 149 641 165 31 16 chr1 166830132 166830259 -75834094 - LTR48 LTR ERV1 0 787 659 1143 188 166 6 chr1 166830259 166830584 -75833769 - LTR24C LTR ERV1 0 635 259 809 64 0 107 chr1 166830585 166830725 -75833628 - LTR24C LTR ERV1 -492 143 19 6793 85 17 9 chr1 166830752 166831812 -75832541 - L1MA1 LINE L1 -1 6301 5233 664 217 62 106 chr1 166831840 166832319 -75832034 - LTR29 LTR ERV1 -144 643 4 246 269 28 28 chr1 166832324 166832432 -75831921 - L1MCb LINE L1 -6300 264 157 367 219 20 82 chr1 166832433 166832513 -75831840 - MER97c DNA MER1_type? -911 179 110 1923 166 0 0 chr1 166832513 166832802 -75831551 - AluSx SINE Alu -18 294 6 367 219 20 82 chr1 166832802 166832867 -75831486 - MER97c DNA MER1_type? -980 110 43 253 381 78 55 chr1 166832880 166833224 -75831129 + L2 LINE L2 2915 3266 -6 448 284 100 78 chr1 166833235 166833566 -75830787 + HAL1b LINE L1 486 823 -525 21 57 0 0 chr1 166834274 166834309 -75830044 + AT_rich Low_complexity Low_complexity 1 35 0 826 249 138 37 chr1 166835931 166836536 -75827817 - LTR1B LTR ERV1 0 1020 311 317 278 37 68 chr1 166836831 166836993 -75827360 - HAL1 LINE L1 -1649 858 702 392 307 57 47 chr1 166837014 166837226 -75827127 - HAL1 LINE L1 -1868 639 426 2172 168 44 10 chr1 166837324 166837734 -75826619 + MSTB LTR MaLR 1 424 -2 2921 198 22 7 chr1 166838152 166838865 -75825488 - L1 LINE L1 -1054 5092 4369 1264 129 4 53 chr1 166838878 166839007 -75825346 - L1PB1 LINE L1 -1 6150 6035 2607 36 3 0 chr1 166839007 166839309 -75825044 - AluY SINE Alu -8 303 1 1264 129 4 53 chr1 166839309 166839404 -75824949 - L1PB1 LINE L1 -116 6035 5937 2311 54 13 57 chr1 166839571 166839887 -75824466 + AluY SINE Alu 1 302 -9 565 136 0 73 chr1 166839966 166840076 -75824277 + FRAM SINE Alu 54 155 -21 2292 101 0 0 chr1 166840342 166840640 -75823713 - AluSc SINE Alu -11 298 1 337 301 85 32 chr1 166840997 166841243 -75823110 + L1 LINE L1 3125 3383 -2763 1039 176 5 11 chr1 166841999 166842186 -75822167 - AluJo SINE Alu -126 186 1 1714 189 0 23 chr1 166842717 166843018 -75821335 - AluJb SINE Alu -18 294 1 1183 176 29 137 chr1 166843855 166844265 -75820088 - LTR48B LTR ERV1 -30 614 249 4488 152 6 12 chr1 166844329 166844377 -75819976 - L1MA5 LINE L1 -5 7357 7310 1617 194 13 23 chr1 166844377 166844676 -75819677 - AluJo SINE Alu -16 296 1 4488 152 6 12 chr1 166844676 166845405 -75818948 - L1MA5 LINE L1 -52 7310 6584 626 156 0 0 chr1 166845407 166845497 -75818856 + AluJ/FLAM SINE Alu 1 90 -222 1714 131 27 16 chr1 166845498 166845973 -75818380 - L1MA5 LINE L1 -743 6465 6098 809 108 8 8 chr1 166845998 166846118 -75818235 - LTR48B LTR ERV1 -87 557 438 413 147 0 15 chr1 166846158 166846226 -75818127 - LTR48B LTR ERV1 -140 504 438 1349 176 0 0 chr1 166846226 166846470 -75817883 - L1MA5 LINE L1 -1120 6088 5845 2786 194 64 22 chr1 166846482 166847213 -75817140 - L1MA5 LINE L1 -4105 3104 2343 43097 30 22 1 chr1 166847234 166853260 -75811093 - L1PA2 LINE L1 0 6155 3 2747 214 9 37 chr1 166853288 166853970 -75810383 - L1MA5 LINE L1 -4809 2400 1738 1563 293 60 22 chr1 166854184 166854682 -75809671 - L1MA5 LINE L1 -6567 642 126 409 252 0 42 chr1 166854703 166854822 -75809531 - MER34 LTR ERV1 -428 114 1 270 184 23 11 chr1 166855110 166855197 -75809156 + (TA)n Simple_repeat Simple_repeat 2 89 0 315 382 59 13 chr1 166855469 166855707 -75808646 + L1MEd LINE L1 670 918 -5287 654 259 78 29 chr1 166855794 166856168 -75808185 + L1MEd LINE L1 1287 1678 -4718 654 60 30 0 chr1 166856327 166856427 -75807926 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 3119 220 83 30 chr1 166856456 166856882 -75807471 + MER21B LTR ERV1 13 498 -365 2063 171 33 6 chr1 166856882 166857244 -75807109 - MER83C LTR ERV1 0 373 2 3119 220 83 30 chr1 166857244 166857580 -75806773 + MER21B LTR ERV1 498 815 -48 393 22 0 0 chr1 166857600 166857646 -75806707 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1800 135 57 4 chr1 166857712 166857993 -75806360 - AluSx SINE Alu -16 296 1 2246 110 3 0 chr1 166858031 166858341 -75806012 - AluSx SINE Alu -1 311 1 25 0 0 0 chr1 166858498 166858523 -75805830 + AT_rich Low_complexity Low_complexity 1 25 0 226 333 191 26 chr1 166858651 166858752 -75805601 - L2 LINE L2 -2812 502 419 2833 10 0 0 chr1 166858752 166859060 -75805293 - AluY SINE Alu -3 308 1 226 333 191 26 chr1 166859060 166859303 -75805050 - L2 LINE L2 -2895 419 101 1401 143 22 0 chr1 166860558 166860788 -75803565 - MER46A DNA MER2_type -1 235 1 1789 147 33 20 chr1 166861021 166861321 -75803032 + AluJo SINE Alu 3 306 -6 193 231 0 58 chr1 166861451 166861503 -75802850 - MER5B DNA MER1_type 0 178 130 483 263 177 13 chr1 166861609 166861808 -75802545 - L1ME4a LINE L1 -159 5962 5797 1455 97 0 39 chr1 166861808 166862015 -75802338 - AluY SINE Alu -10 301 103 483 263 177 13 chr1 166862015 166862115 -75802238 - L1ME4a LINE L1 -324 5797 5614 283 286 13 0 chr1 166862138 166862215 -75802138 - MLT1L LTR MaLR -335 280 203 667 226 67 6 chr1 166862479 166862643 -75801710 - MER5A DNA MER1_type 0 189 16 2890 190 49 32 chr1 166862643 166863113 -75801240 - L1MC4a LINE L1 -85 7723 7262 2070 100 0 7 chr1 166863113 166863382 -75800971 - AluSx SINE Alu -25 287 21 2890 190 49 32 chr1 166863382 166863596 -75800757 - L1MC4a LINE L1 -546 7262 5575 29 0 0 0 chr1 166864635 166864664 -75799689 + AT_rich Low_complexity Low_complexity 1 29 0 413 288 197 13 chr1 166864878 166865111 -75799242 - MLT1I LTR MaLR -66 343 68 244 337 24 0 chr1 166865170 166865253 -75799100 - MIR3 SINE MIR -38 170 86 1334 209 38 60 chr1 166865612 166866175 -75798178 - L1MC4a LINE L1 -744 5402 4997 1658 196 3 13 chr1 166866234 166866546 -75797807 + AluJo SINE Alu 3 311 -1 822 153 0 7 chr1 166866546 166866690 -75797663 - L1MB2 LINE L1 -5 6166 6024 1724 175 7 8 chr1 166866690 166867207 -75797146 - L1MB2 LINE L1 -672 5511 4995 22 0 0 0 chr1 166867872 166867894 -75796459 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 166867961 166867981 -75796372 + (TTG)n Simple_repeat Simple_repeat 2 21 0 625 191 0 0 chr1 166867983 166868088 -75796265 - FLAM_C SINE Alu -21 122 18 617 243 107 0 chr1 166868115 166868292 -75796061 + MIR SINE MIR 67 262 0 861 247 85 14 chr1 166868417 166868640 -75795713 + MER69 DNA AcHobo 2 240 -2286 543 205 161 77 chr1 166868645 166868918 -75795435 - MLT1H LTR MaLR -5 544 249 2812 232 62 43 chr1 166868921 166869372 -75794981 - L1MB2 LINE L1 -1348 4798 4357 2112 134 48 20 chr1 166869372 166869723 -75794630 + THE1B LTR MaLR 4 364 0 2812 232 62 43 chr1 166869723 166870185 -75794168 - L1MB2 LINE L1 -1789 4357 3860 2040 181 81 2 chr1 166870185 166870582 -75793771 - MSTA LTR MaLR 0 428 1 2812 232 62 43 chr1 166870582 166870696 -75793657 - L1MB2 LINE L1 -2286 3860 3750 2274 100 6 13 chr1 166870939 166871250 -75793103 - AluSg SINE Alu 0 310 2 23 0 0 0 chr1 166871261 166871284 -75793069 + AT_rich Low_complexity Low_complexity 1 23 0 189 350 0 68 chr1 166872025 166872128 -75792225 - MIR SINE MIR -141 121 26 663 227 0 7 chr1 166872947 166872965 -75791388 - FLAM_C SINE Alu -172 140 123 1006 126 17 0 chr1 166872965 166873140 -75791213 + CT-rich Low_complexity Low_complexity 3 180 0 690 72 0 0 chr1 166873146 166873243 -75791110 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 663 227 0 7 chr1 166873243 166873358 -75790995 - FLAM_C SINE Alu -194 118 1 15129 215 31 28 chr1 166873364 166878518 -75785835 - L1PA15 LINE L1 -1 6815 1551 452 138 0 0 chr1 166878518 166878598 -75785755 - AluJ/FRAM SINE Alu -5 307 228 15129 215 31 28 chr1 166878598 166879000 -75785353 - L1PA15 LINE L1 -5265 1551 1152 1993 149 3 10 chr1 166879025 166879334 -75785019 - AluSp SINE Alu -6 307 1 3989 106 3 13 chr1 166879342 166879976 -75784377 - L1MA3 LINE L1 0 6305 5678 3506 202 11 10 chr1 166879979 166880902 -75783451 - L1MA3 LINE L1 -743 5403 4551 * 13089 203 28 21 chr1 166880896 166882240 -75782113 + L1PB2 LINE L1 2231 3564 -3303 2199 91 7 3 chr1 166882240 166882527 -75781826 + AluSc SINE Alu 1 288 -21 13089 203 28 21 chr1 166882527 166885707 -75778646 + L1PB2 LINE L1 3564 6867 0 290 167 48 12 chr1 166885699 166885783 -75778570 - L1MA3 LINE L1 -1597 4549 4463 * 3446 51 0 0 chr1 166885785 166886213 -75778140 - L1PA6 LINE L1 -3 6151 5724 13432 134 13 17 chr1 166886213 166888387 -75775966 - L1P LINE L1 -3970 2176 10 817 193 0 0 chr1 166888428 166888563 -75775790 - AluJo SINE Alu -177 135 1 408 169 0 0 chr1 166888563 166888652 -75775701 - L1MA3 LINE L1 -1681 4465 4377 416 179 0 0 chr1 166888653 166888720 -75775633 - AluS SINE Alu -24 288 222 610 248 0 0 chr1 166888723 166888868 -75775485 - L1MA3 LINE L1 -3227 2919 2775 1309 183 86 26 chr1 166888873 166889141 -75775212 + MSTA LTR MaLR 143 426 -2 1794 233 5 9 chr1 166889141 166889575 -75774778 - L1MA3 LINE L1 -3365 2781 2350 297 384 63 17 chr1 166889994 166890231 -75774122 - L3 LINE CR1 -1192 385 138 415 271 0 45 chr1 166891861 166891994 -75772359 + L2 LINE L2 3187 3313 0 22 0 0 0 chr1 166892052 166892074 -75772279 + AT_rich Low_complexity Low_complexity 1 22 0 500 228 6 17 chr1 166892085 166892265 -75772088 + (TA)n Simple_repeat Simple_repeat 2 179 0 521 155 0 10 chr1 166892906 166893003 -75771350 - L1P LINE L1 -2411 3735 3640 346 321 68 28 chr1 166893010 166893434 -75770919 + L1MC/D LINE L1 3505 3945 -2201 280 278 42 0 chr1 166893485 166893557 -75770796 - MIR SINE MIR -144 118 44 389 341 84 34 chr1 166893814 166894228 -75770125 + L1MC/D LINE L1 4810 5244 -902 1031 286 36 52 chr1 166894239 166894735 -75769618 + L1MC/D LINE L1 5273 5760 -2048 1821 151 0 28 chr1 166895038 166895357 -75768996 + AluJo SINE Alu 1 310 -2 183 129 0 0 chr1 166896088 166896119 -75768234 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 937 64 0 21 chr1 166896119 166896259 -75768094 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 11058 116 31 46 chr1 166897511 166900073 -75764280 - L1P3 LINE L1 -3842 2619 8 24 32 0 0 chr1 166900074 166900105 -75764248 + AT_rich Low_complexity Low_complexity 1 31 0 541 218 0 0 chr1 166900112 166900213 -75764140 - L1MC1 LINE L1 -17 6316 6216 1652 144 27 99 chr1 166900275 166900677 -75763676 - MSTD LTR MaLR -23 373 1 2108 175 36 5 chr1 166900679 166901124 -75763229 - L1MC1 LINE L1 -111 6222 5764 2819 26 0 0 chr1 166901231 166901540 -75762813 + SVA Other Other 862 1170 -216 2277 131 11 5 chr1 166901553 166901927 -75762426 + L1PA16 LINE L1 5769 6144 -22 216 0 0 0 chr1 166901953 166901977 -75762376 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1162 234 38 28 chr1 166901978 166902376 -75761977 + L1MEc LINE L1 1668 2069 -4327 227 152 22 0 chr1 166902382 166902428 -75761925 + A-rich Low_complexity Low_complexity 3 49 0 2604 249 54 34 chr1 166902514 166903317 -75761036 + L1MEc LINE L1 2144 2930 -3285 3024 160 54 2 chr1 166903317 166903818 -75760535 + MER1A DNA MER1_type 1 527 0 2604 249 54 34 chr1 166903818 166904152 -75760201 + L1MEc LINE L1 2930 3280 -2935 1426 24 0 0 chr1 166904152 166904317 -75760036 + L1PA5 LINE L1 5981 6145 -9 2604 249 54 34 chr1 166904317 166904559 -75759794 + L1MEc LINE L1 3280 3516 -2699 534 89 0 13 chr1 166904745 166904824 -75759529 + L1P3 LINE L1 96 173 -5702 11401 170 10 32 chr1 166904826 166906244 -75758109 + L1P3 LINE L1 304 1753 -4708 2185 147 0 0 chr1 166906244 166906556 -75757797 + AluSx SINE Alu 1 312 0 11401 170 10 32 chr1 166906556 166908467 -75755886 + L1P3 LINE L1 1753 3599 -2862 5502 31 3 0 chr1 166908462 166909143 -75755210 + L1PA4 LINE L1 5451 6133 -22 * 950 285 32 18 chr1 166909250 166909756 -75754597 - L1P LINE L1 -5632 514 2 2254 117 0 16 chr1 166909776 166910093 -75754260 - AluSx SINE Alu 0 312 1 1140 102 0 40 chr1 166910094 166910271 -75754082 + MSTB1 LTR MaLR 263 432 0 2011 164 39 0 chr1 166910277 166910666 -75753687 - L1M4 LINE L1 -501 5683 5280 349 366 48 19 chr1 166911324 166911805 -75752548 + L2 LINE L2 1276 1770 -1544 3868 186 4 20 chr1 166911948 166912685 -75751668 - LTR39 LTR ERV1 0 783 59 222 91 0 0 chr1 166913028 166913061 -75751292 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 27 49 0 0 chr1 166913820 166913861 -75750492 + AT_rich Low_complexity Low_complexity 1 41 0 29 84 0 0 chr1 166914579 166914650 -75749703 + AT_rich Low_complexity Low_complexity 1 71 0 24 85 0 0 chr1 166914687 166914746 -75749607 + AT_rich Low_complexity Low_complexity 1 59 0 33 25 0 0 chr1 166914866 166914906 -75749447 + AT_rich Low_complexity Low_complexity 1 40 0 281 390 22 4 chr1 166914995 166915223 -75749130 - LOR1-int LTR ERV1 -506 7614 7383 286 342 35 32 chr1 166915320 166915716 -75748637 - LOR1-int LTR ERV1 -830 7290 6135 40357 38 22 2 chr1 166915861 166921919 -75742434 + L1PA3 LINE L1 3 6180 0 553 262 25 102 chr1 166922303 166922578 -75741775 - MLT1K LTR MaLR 0 588 335 1457 212 53 95 chr1 166922842 166923076 -75741277 + L1M4 LINE L1 3469 3711 -2435 271 81 0 0 chr1 166923076 166923113 -75741240 + tRNA-Ile-ATT tRNA tRNA 3 39 -38 1457 212 53 95 chr1 166923113 166923534 -75740819 + L1M4 LINE L1 3711 4131 -2015 1961 162 13 3 chr1 166923614 166923922 -75740431 + AluJb SINE Alu 1 311 -1 1879 170 16 33 chr1 166924152 166924641 -75739712 - pTR5 LTR ERV1 -1215 1223 743 270 279 77 0 chr1 166924646 166924750 -75739603 + MLT1L LTR MaLR 502 613 -2 1533 217 53 32 chr1 166925218 166925673 -75738680 + Charlie1b DNA MER1_type 1 470 -2291 2199 117 3 0 chr1 166925673 166925972 -75738381 - AluSx SINE Alu -12 300 1 1533 217 53 32 chr1 166925972 166926023 -75738330 + Charlie1b DNA MER1_type 470 518 -5 4945 152 30 17 chr1 166926294 166928825 -75735528 - L1MA9 LINE L1 0 7272 4641 614 14 0 0 chr1 166928825 166928898 -75735455 - L1PA3 LINE L1 -8 6147 6075 4945 152 30 17 chr1 166928898 166929143 -75735210 - L1MA9 LINE L1 -2631 4641 4400 699 168 24 12 chr1 166929168 166929335 -75735018 - L1MA9 LINE L1 -2687 4419 4251 635 281 9 5 chr1 166929333 166929550 -75734803 - L1MA9 LINE L1 -4969 2061 1844 * 327 321 67 43 chr1 166930037 166930336 -75734017 - L1MA9 LINE L1 -5829 1208 903 448 266 21 7 chr1 166930844 166930987 -75733366 + L1MEd LINE L1 600 744 -5375 28383 93 7 10 chr1 166931250 166935558 -75728795 + L1P LINE L1 601 4896 -1250 363 73 0 0 chr1 166935658 166935713 -75728640 + L1PA13 LINE L1 6109 6163 0 5689 98 17 2 chr1 166935716 166936582 -75727771 + L1P LINE L1 3262 4140 -2006 931 176 8 141 chr1 166936583 166936838 -75727515 - AluJo SINE Alu -87 225 5 496 229 8 0 chr1 166936843 166936965 -75727388 + L1M4 LINE L1 4092 4214 -1932 21 36 0 0 chr1 166937081 166937109 -75727244 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 166937983 166938006 -75726347 + AT_rich Low_complexity Low_complexity 1 23 0 1625 184 10 33 chr1 166938746 166939045 -75725308 + AluJo SINE Alu 6 297 -15 1137 280 97 48 chr1 166939378 166939943 -75724410 + MLT1E LTR MaLR 1 593 0 596 236 17 28 chr1 166939948 166940126 -75724227 + MLT1E-int LTR MaLR 24 199 -1172 567 312 74 30 chr1 166940784 166941015 -75723338 - MIR SINE MIR -15 247 7 388 268 73 0 chr1 166941035 166941158 -75723195 - MIR SINE MIR -12 250 119 359 268 0 0 chr1 166942205 166942287 -75722066 + MER81 DNA DNA 31 112 -2 23 0 0 0 chr1 166942344 166942367 -75721986 + AT_rich Low_complexity Low_complexity 1 23 0 1786 237 38 4 chr1 166943278 166943730 -75720623 + MLT1C LTR MaLR 1 467 0 204 256 23 0 chr1 166944067 166944110 -75720243 + L2 LINE L2 3010 3053 -219 954 114 0 0 chr1 166944148 166944297 -75720056 + L1MA5A LINE L1 6149 6297 0 1107 262 156 45 chr1 166944313 166944897 -75719456 + MER21B LTR ERV1 59 707 -156 990 280 128 32 chr1 166945041 166945502 -75718851 + MLT1K LTR MaLR 82 586 -2 211 344 98 22 chr1 166945515 166945698 -75718655 + L2 LINE L2 3073 3269 -3 374 270 64 52 chr1 166945793 166945954 -75718399 + MIR3 SINE MIR 5 171 -64 2303 91 10 0 chr1 166946010 166946308 -75718045 + AluSp SINE Alu 1 301 -12 182 204 0 37 chr1 166947622 166947676 -75716677 + A-rich Low_complexity Low_complexity 4 55 0 912 217 0 0 chr1 166948620 166948786 -75715567 - AluJb SINE Alu -12 300 135 5164 153 78 15 chr1 166949431 166949693 -75714660 + L1MA5 LINE L1 4128 4372 -1928 1909 171 20 0 chr1 166949693 166949991 -75714362 + AluSx SINE Alu 1 304 -8 5164 153 78 15 chr1 166949991 166950293 -75714060 + L1MA5 LINE L1 4372 4654 -1646 225 94 0 0 chr1 166950293 166950325 -75714028 + (CACAT)n Simple_repeat Simple_repeat 2 33 0 5164 153 78 15 chr1 166950325 166950859 -75713494 + L1MA5 LINE L1 4654 5153 -1147 339 44 0 0 chr1 166950859 166950904 -75713449 + (CA)n Simple_repeat Simple_repeat 2 46 0 5164 153 78 15 chr1 166950904 166951680 -75712673 + L1MA5 LINE L1 5153 6125 -175 297 0 0 0 chr1 166951705 166951738 -75712615 + (TG)n Simple_repeat Simple_repeat 1 33 0 1026 173 147 5 chr1 166951838 166952035 -75712318 - AluJo SINE Alu -86 226 2 963 139 0 36 chr1 166952035 166952229 -75712124 + L1MA5 LINE L1 6111 6297 -3 1113 222 0 4 chr1 166952243 166952468 -75711885 + MLT1A1 LTR MaLR 142 365 0 686 288 81 26 chr1 166952473 166952820 -75711533 + L2 LINE L2 2329 2694 -620 2575 226 67 42 chr1 166952855 166953717 -75710636 - L1MC4 LINE L1 -655 7387 6504 333 268 0 0 chr1 166953908 166953979 -75710374 + L2 LINE L2 3243 3313 0 730 288 5 14 chr1 166955059 166955271 -75709082 + MER63A DNA MER1_type 1 210 0 213 194 0 0 chr1 166957519 166957555 -75706798 + (ATG)n Simple_repeat Simple_repeat 3 38 0 346 233 62 47 chr1 166957645 166957774 -75706579 - MLT1K LTR MaLR -2 586 456 252 272 40 45 chr1 166959478 166959680 -75704673 - L1MCa LINE L1 -4655 1952 1752 414 321 25 77 chr1 166959729 166960015 -75704338 - L1MCa LINE L1 -1070 1717 1190 6852 57 3 14 chr1 166960015 166961311 -75703042 - L1PA6 LINE L1 -2 6152 4843 2109 129 41 21 chr1 166961411 166961798 -75702555 - L1MC/D LINE L1 -656 5677 5283 * 4752 108 4 1 chr1 166961795 166962532 -75701821 - L1PA14 LINE L1 0 6161 5423 * 17198 212 20 28 chr1 166962523 166969777 -75694576 - L1P4 LINE L1 -674 6925 266 3324 235 29 13 chr1 166969774 166970774 -75693579 - L1MC/D LINE L1 -1184 4962 3947 * 1938 157 99 8 chr1 166972513 166972876 -75691477 - MSTD LTR MaLR 0 396 1 237 299 82 45 chr1 166973130 166973264 -75691089 + L3 LINE CR1 252 390 -1187 1054 159 22 66 chr1 166973283 166973464 -75690889 + AluJo SINE Alu 90 261 -51 2306 118 16 29 chr1 166973464 166973844 -75690509 - THE1C LTR MaLR 0 375 1 1054 159 22 66 chr1 166973844 166973889 -75690464 + AluJo SINE Alu 261 306 -6 364 264 96 56 chr1 166973907 166974085 -75690268 - MIR3 SINE MIR -10 198 14 1735 283 111 42 chr1 166974092 166974837 -75689516 + L3 LINE CR1 460 1256 -321 201 323 212 10 chr1 166974862 166974961 -75689392 - L2 LINE L2 -1 3271 3153 197 321 82 45 chr1 166974959 166975093 -75689260 + MER5A DNA MER1_type 8 146 -43 * 463 309 23 39 chr1 166975181 166975437 -75688916 + L3 LINE CR1 1257 1508 -69 1015 248 95 39 chr1 166976287 166976699 -75687654 + LTR16A LTR ERVL 16 450 0 21 57 0 0 chr1 166977995 166978030 -75686323 + AT_rich Low_complexity Low_complexity 1 35 0 884 352 47 34 chr1 166978270 166979301 -75685052 - PABL_B-int LTR ERV1 -3127 3995 3200 274 328 51 51 chr1 166979478 166979713 -75684640 - PABL_B-int LTR ERV1 -4123 2999 2765 262 368 13 25 chr1 166979996 166980311 -75684042 - PABL_B-int LTR ERV1 -5855 1267 957 4224 180 4 41 chr1 166981320 166981957 -75682396 - LTR39 LTR ERV1 0 783 124 2314 84 7 0 chr1 166981957 166982253 -75682100 - AluSq SINE Alu -15 298 1 1823 117 0 0 chr1 166982259 166982506 -75681847 - AluSg SINE Alu -10 300 54 4224 180 4 41 chr1 166982506 166982674 -75681679 - LTR39 LTR ERV1 -664 119 1 958 330 130 26 chr1 166982754 166983630 -75680723 - L2 LINE L2 -453 2861 1895 262 0 0 0 chr1 166983662 166983702 -75680651 - L1PA2 LINE L1 0 6155 6116 239 238 0 18 chr1 166983724 166983786 -75680567 - MIR SINE MIR -119 89 28 314 388 13 7 chr1 166984149 166984301 -75680052 - L2 LINE L2 -276 3037 2885 272 148 56 0 chr1 166984432 166984486 -75679867 - L1MC4 LINE L1 -141 7901 7845 1914 139 24 0 chr1 166984504 166984799 -75679554 - AluSx SINE Alu -10 302 1 1760 94 5 0 chr1 166985048 166985272 -75679081 + AluSp SINE Alu 68 292 -21 24 0 0 0 chr1 166985796 166985820 -75678533 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr1 166986224 166986261 -75678092 + AT_rich Low_complexity Low_complexity 1 37 0 821 161 0 0 chr1 166986261 166986379 -75677974 - FLAM_C SINE Alu -25 118 1 990 267 12 20 chr1 166986900 166987151 -75677202 + MIR SINE MIR 9 257 -5 414 0 0 0 chr1 166988846 166988892 -75675461 + (TG)n Simple_repeat Simple_repeat 2 47 0 900 221 83 31 chr1 166989112 166989366 -75674987 - L2 LINE L2 -1 3312 3046 13266 41 8 0 chr1 166990244 166992644 -75671709 - L1PA5 LINE L1 -5 6149 3736 23 33 0 0 chr1 166992876 166992906 -75671447 + AT_rich Low_complexity Low_complexity 1 30 0 211 265 44 15 chr1 166993259 166993327 -75671026 - L2 LINE L2 -8 3264 3195 332 286 163 44 chr1 166993569 166993912 -75670441 - L2 LINE L2 -360 2954 2571 22 0 0 0 chr1 166995069 166995091 -75669262 + AT_rich Low_complexity Low_complexity 1 22 0 329 313 99 47 chr1 166995700 166995911 -75668442 - L2 LINE L2 -512 2802 2581 308 326 87 0 chr1 166997060 166997152 -75667201 - MIR SINE MIR -84 124 25 2378 79 3 0 chr1 166998021 166998362 -75665991 - L1PB1 LINE L1 -470 5681 5340 726 127 0 0 chr1 166998360 166998470 -75665883 + L1PB1 LINE L1 5682 5791 -360 * 349 189 9 9 chr1 166998470 166998576 -75665777 + (TA)n Simple_repeat Simple_repeat 1 106 0 2224 146 6 0 chr1 166998579 166998943 -75665410 + L1PB1 LINE L1 5783 6148 -3 725 267 142 42 chr1 166999303 166999797 -75664556 + MLT1L LTR MaLR 1 543 -72 397 239 71 0 chr1 166999804 166999917 -75664436 + MER5C DNA MER1_type 4 124 -200 248 146 0 18 chr1 166999983 167000038 -75664315 + MER5C DNA MER1_type 260 313 -11 246 254 17 28 chr1 167000520 167000604 -75663749 + MIR SINE MIR 85 168 -62 469 299 152 13 chr1 167000631 167000855 -75663498 - MIR SINE MIR 0 262 8 346 333 8 32 chr1 167001226 167001349 -75663004 + MIR3 SINE MIR 11 130 -78 1647 136 223 0 chr1 167001413 167001758 -75662595 - MSTA LTR MaLR -6 422 1 8524 174 51 2 chr1 167001758 167003333 -75661020 - MSTA-int LTR MaLR 0 1651 1 2202 121 132 5 chr1 167003333 167003713 -75660640 - MSTA LTR MaLR 0 428 1 360 313 54 0 chr1 167004391 167004503 -75659850 - MIR SINE MIR -75 133 16 612 288 45 0 chr1 167005345 167005522 -75658831 - MIR SINE MIR -12 250 66 729 318 97 17 chr1 167005527 167005939 -75658414 + MLT1L LTR MaLR 7 451 -164 2336 85 0 0 chr1 167005961 167006290 -75658063 - pTR5 LTR ERV1 -2044 394 66 313 202 32 21 chr1 167006290 167006384 -75657969 - LTR30 LTR ERV1 -80 642 548 1302 123 39 31 chr1 167006384 167006676 -75657677 - pTR5 LTR ERV1 -433 1522 6 5084 48 26 149 chr1 167006778 167007879 -75656474 - SVA Other Other -520 866 13 14524 156 21 14 chr1 167008012 167012772 -75651581 - L1MA1 LINE L1 -4 7717 2922 247 81 0 0 chr1 167012770 167012807 -75651546 + L1M1 LINE L1 2167 2203 -5362 * 1838 113 0 7 chr1 167012807 167013098 -75651255 + L1P LINE L1 3772 4060 -2086 8708 127 19 19 chr1 167013126 167015167 -75649186 - L1P4 LINE L1 -362 5812 3772 5466 212 32 34 chr1 167015154 167015577 -75648776 - L1MA1 LINE L1 -5351 2214 1791 * 297 0 0 0 chr1 167015577 167015610 -75648743 + (TC)n Simple_repeat Simple_repeat 2 34 0 5466 212 32 34 chr1 167015610 167017105 -75647248 - L1MA1 LINE L1 -5774 1791 20 2596 238 61 73 chr1 167017104 167017723 -75646630 - L1MEc LINE L1 -4374 1841 1216 * 1551 220 16 43 chr1 167017723 167018168 -75646185 + MER63B DNA MER1_type 4 436 0 2596 238 61 73 chr1 167018168 167019095 -75645258 - L1MEc LINE L1 -4999 1216 35 1042 192 61 35 chr1 167020115 167020409 -75643944 + MLT1D LTR MaLR 1 253 -252 864 260 49 52 chr1 167020483 167020917 -75643436 - MLT1C LTR MaLR 0 467 31 11441 78 2 28 chr1 167020929 167023347 -75641006 - L1PA7 LINE L1 -2 6152 3775 1265 136 29 10 chr1 167023347 167023553 -75640800 - AluSc SINE Alu -12 297 88 7792 94 21 20 chr1 167023553 167024496 -75639857 - L1PA7 LINE L1 -2366 3780 2834 1968 85 7 25 chr1 167024496 167024778 -75639575 - AluY SINE Alu -1 310 34 7792 94 21 20 chr1 167024778 167025112 -75639241 - L1PA7 LINE L1 -3312 2834 2502 228 342 13 0 chr1 167075117 167075196 -75589157 + L2 LINE L2 3223 3302 -11 357 322 125 0 chr1 167075271 167075423 -75588930 - MIR SINE MIR -84 178 8 404 95 0 0 chr1 167075657 167075720 -75588633 - MER21B LTR ERV1 -353 578 446 352 246 82 33 chr1 167075726 167075848 -75588505 - L2 LINE L2 -18 3295 3168 827 287 125 39 chr1 167075887 167076295 -75588058 + MLT1K LTR MaLR 15 457 -131 775 306 80 36 chr1 167076447 167077489 -75586864 + L1MC/D LINE L1 4620 5711 -748 26 0 0 0 chr1 167077866 167077892 -75586461 + AT_rich Low_complexity Low_complexity 1 26 0 4208 167 94 11 chr1 167078384 167079146 -75585207 - LTR1B LTR ERV1 0 826 1 440 231 58 0 chr1 167079348 167079452 -75584901 + L2 LINE L2 3204 3313 0 3176 208 86 47 chr1 167080661 167081456 -75582897 - LTR1B LTR ERV1 0 826 1 362 308 60 8 chr1 167082733 167082850 -75581503 - L2 LINE L2 -1 3312 3190 205 329 75 41 chr1 167083017 167083163 -75581190 - L2 LINE L2 0 3272 3122 327 300 10 20 chr1 167083662 167083762 -75580591 + MIR SINE MIR 17 115 -93 396 71 0 0 chr1 167083767 167083823 -75580530 + (TTTCC)n Simple_repeat Simple_repeat 2 57 0 1570 203 34 3 chr1 167083837 167084133 -75580220 - AluJo SINE Alu -7 305 1 268 265 29 49 chr1 167084133 167084235 -75580118 + MIR SINE MIR 100 199 -63 3513 143 10 4 chr1 167084296 167084805 -75579548 + MER41E LTR ERV1 1 512 0 284 250 0 66 chr1 167085797 167085831 -75578522 - L2 LINE L2 -9 3304 3269 897 247 18 0 chr1 167085831 167086001 -75578352 + MER45A DNA AcHobo 4 176 -2 284 250 0 66 chr1 167086001 167086042 -75578311 - L2 LINE L2 -44 3269 3234 1133 286 70 38 chr1 167086223 167086881 -75577472 - L1ME4a LINE L1 -4 6117 5446 1958 75 37 4 chr1 167087077 167087345 -75577008 - L1PA13 LINE L1 0 6163 5887 311 351 55 36 chr1 167087628 167087793 -75576560 + L3 LINE CR1 1408 1575 -2 21 36 0 0 chr1 167087903 167087931 -75576422 + AT_rich Low_complexity Low_complexity 1 28 0 219 338 113 14 chr1 167087993 167088135 -75576218 - L2 LINE L2 -178 3094 2939 2178 152 39 0 chr1 167088412 167088747 -75575606 - MER7A DNA MER2_type 0 346 1 300 301 12 12 chr1 167089254 167089337 -75575016 - L2 LINE L2 -4 3268 3186 256 312 65 9 chr1 167090303 167090490 -75573863 - MIR SINE MIR 0 262 2 377 271 62 52 chr1 167092868 167093078 -75571275 - L1ME3A LINE L1 -15 6155 5944 5971 181 41 29 chr1 167093164 167095336 -75569017 - L1MC1 LINE L1 -1 6332 5286 517 283 150 65 chr1 167095577 167095884 -75568469 - MLT1I LTR MaLR -6 403 71 274 143 0 0 chr1 167096671 167096720 -75567633 + L2 LINE L2 3265 3313 0 289 282 32 57 chr1 167098158 167098282 -75566071 - MER5A DNA MER1_type -25 164 44 473 216 52 119 chr1 167098730 167098899 -75565454 + MER112 DNA MER1_type 5 151 -109 2394 93 0 10 chr1 167098899 167099210 -75565143 + AluSc SINE Alu 1 308 -1 473 216 52 119 chr1 167099210 167099308 -75565045 + MER112 DNA MER1_type 151 254 -6 819 260 31 18 chr1 167099742 167099965 -75564388 + MIR SINE MIR 3 228 -34 713 154 29 22 chr1 167100529 167100665 -75563688 - MIR SINE MIR -66 196 60 435 19 0 0 chr1 167102687 167102739 -75561614 + (CA)n Simple_repeat Simple_repeat 1 52 0 2073 139 0 22 chr1 167103127 167103444 -75560909 - AluSx SINE Alu 0 312 3 194 271 169 0 chr1 167103785 167103844 -75560509 + MIR SINE MIR 37 105 -103 1341 272 77 27 chr1 167103910 167104428 -75559925 - MLT1K LTR MaLR -17 571 28 500 256 111 10 chr1 167104446 167104653 -75559700 + L2 LINE L2 1880 2107 -1207 391 223 120 47 chr1 167104657 167104873 -75559480 - LTR50 LTR ERVL 0 795 575 2415 101 0 0 chr1 167104895 167105203 -75559150 - AluSg SINE Alu -2 308 1 815 249 111 0 chr1 167105349 167105566 -75558787 + L2 LINE L2 2406 2646 -668 3423 163 32 12 chr1 167105572 167106329 -75558024 - L1MCa LINE L1 -4821 1605 834 1155 186 82 0 chr1 167106335 167106566 -75557787 - L1MCa LINE L1 -6159 267 18 1079 269 99 27 chr1 167106595 167107155 -75557198 + L2 LINE L2 2674 3283 -30 1297 234 41 82 chr1 167107155 167107716 -75556637 - MER34 LTR ERV1 -4 538 1 1079 269 99 27 chr1 167107716 167107740 -75556613 + L2 LINE L2 3283 3304 -9 282 327 74 97 chr1 167107766 167108210 -75556143 - L2 LINE L2 -32 3240 2807 27 0 0 0 chr1 167109615 167109642 -75554711 + AT_rich Low_complexity Low_complexity 1 27 0 322 320 54 26 chr1 167109862 167110035 -75554318 + MIR SINE MIR 4 173 -43 469 278 26 0 chr1 167110343 167110458 -75553895 + MIR3 SINE MIR 52 169 -39 314 289 21 46 chr1 167110554 167110748 -75553605 + MER112 DNA MER1_type 70 258 -2 249 376 98 23 chr1 167111249 167111382 -75552971 + L2 LINE L2 3122 3264 -8 489 325 91 67 chr1 167112559 167113035 -75551318 - L2 LINE L2 -1 3271 2782 227 326 122 0 chr1 167113284 167113382 -75550971 - MIR SINE MIR -132 130 21 358 345 25 0 chr1 167113827 167113946 -75550407 - MIR SINE MIR -139 123 2 328 288 8 24 chr1 167114403 167114528 -75549825 + MER112 DNA MER1_type 132 254 -6 266 263 158 0 chr1 167114702 167114797 -75549556 - HAL1 LINE L1 -114 2393 2284 187 318 0 16 chr1 167116484 167116547 -75547806 + L2 LINE L2 3211 3272 0 553 236 154 43 chr1 167116594 167116713 -75547640 - MIR SINE MIR -24 238 134 2052 108 14 0 chr1 167116713 167117000 -75547353 + AluSp SINE Alu 21 311 -2 553 236 154 43 chr1 167117000 167117088 -75547265 - MIR SINE MIR -128 134 8 664 193 0 0 chr1 167117258 167117367 -75546986 - FRAM SINE Alu -68 108 1 24 0 0 0 chr1 167117462 167117486 -75546867 + AT_rich Low_complexity Low_complexity 1 24 0 1091 36 7 0 chr1 167117529 167117666 -75546687 - L1PA4 LINE L1 -3 6152 6015 21 57 0 0 chr1 167117735 167117770 -75546583 + AT_rich Low_complexity Low_complexity 1 35 0 180 339 0 15 chr1 167118287 167118352 -75546001 - MIR SINE MIR -106 102 39 296 367 14 22 chr1 167118712 167118851 -75545502 - L3 LINE CR1 -59 1518 1381 687 278 56 23 chr1 167118921 167119187 -75545166 + Charlie8 DNA MER1_type 1 275 -2142 231 290 246 43 chr1 167119315 167119522 -75544831 - L3 LINE CR1 -257 1320 1072 2134 133 0 3 chr1 167119902 167120211 -75544142 + AluSx SINE Alu 1 308 -4 217 269 30 0 chr1 167120368 167120440 -75543913 + CT-rich Low_complexity Low_complexity 1 74 0 310 169 22 0 chr1 167121897 167121986 -75542367 + (TA)n Simple_repeat Simple_repeat 2 92 0 221 182 26 26 chr1 167122478 167122555 -75541798 + (TATAA)n Simple_repeat Simple_repeat 5 81 0 1543 197 32 119 chr1 167124393 167124946 -75539407 - MLT1D LTR MaLR 0 505 1 277 208 112 24 chr1 167125809 167125934 -75538419 - L1MC4a LINE L1 -1845 5963 5828 808 326 67 6 chr1 167126124 167126455 -75537898 + MLT1I LTR MaLR 59 409 0 692 292 22 11 chr1 167126752 167127026 -75537327 + L1ME1 LINE L1 40 316 -6080 233 137 0 151 chr1 167127054 167127127 -75537226 + L1 LINE L1 4619 4680 -1466 298 316 83 35 chr1 167127188 167127416 -75536937 + L1ME1 LINE L1 324 562 -5834 3671 202 1 7 chr1 167127436 167128249 -75536104 - L1PA16 LINE L1 -1149 4997 4190 5303 119 49 5 chr1 167128250 167129358 -75534995 + L1PA16 LINE L1 5014 6165 -1 1310 263 42 27 chr1 167129438 167130056 -75534297 + L1ME1 LINE L1 576 1206 -5190 1618 149 188 25 chr1 167130056 167130424 -75533929 + MSTA LTR MaLR 1 428 0 1310 263 42 27 chr1 167130424 167130464 -75533889 + L1ME1 LINE L1 1206 1244 -5152 654 177 57 32 chr1 167130544 167130702 -75533651 - THE1C LTR MaLR -213 162 1 1270 163 50 53 chr1 167130750 167131070 -75533283 - THE1C LTR MaLR 0 375 57 1721 139 0 98 chr1 167131156 167131473 -75532880 + AluJb SINE Alu 2 287 -15 1273 274 79 44 chr1 167131510 167132239 -75532114 + L1ME1 LINE L1 1296 2081 -4315 390 42 0 0 chr1 167132239 167132287 -75532066 + (CA)n Simple_repeat Simple_repeat 2 49 0 1273 274 79 44 chr1 167132287 167132713 -75531640 + L1ME1 LINE L1 2081 2491 -3905 652 227 28 51 chr1 167132719 167132935 -75531418 + L1ME1 LINE L1 3976 4186 -2029 1797 208 19 8 chr1 167132958 167133323 -75531030 + MLT2B1 LTR ERVL 10 378 -142 1033 224 58 35 chr1 167133341 167133782 -75530571 + L1ME1 LINE L1 5208 5659 -572 1221 223 19 77 chr1 167133791 167134209 -75530144 + L1ME1 LINE L1 5838 6231 -4 23 33 0 0 chr1 167134212 167134242 -75530111 + AT_rich Low_complexity Low_complexity 1 30 0 755 191 175 11 chr1 167134452 167134593 -75529760 + MLT2B1 LTR ERVL 301 482 -38 357 24 0 0 chr1 167134593 167134635 -75529718 + (CAT)n Simple_repeat Simple_repeat 2 43 0 755 191 175 11 chr1 167134635 167134682 -75529671 + MLT2B1 LTR ERVL 482 520 0 201 171 0 0 chr1 167134771 167134806 -75529547 + T-rich Low_complexity Low_complexity 1 35 0 531 244 0 149 chr1 167134954 167135155 -75529198 + MIR3 SINE MIR 13 183 -25 2481 143 26 28 chr1 167135488 167135915 -75528438 - MSTB LTR MaLR 0 426 1 353 322 122 15 chr1 167136424 167136629 -75527724 + MIR SINE MIR 28 254 -8 235 343 38 9 chr1 167136722 167136827 -75527526 - L2 LINE L2 -222 3050 2943 340 248 133 9 chr1 167137357 167137470 -75526883 - MIR SINE MIR -70 192 66 222 293 12 73 chr1 167137673 167137755 -75526598 - L3 LINE CR1 -257 1320 1244 993 189 82 112 chr1 167137873 167138249 -75526104 + MLT1A1 LTR MaLR 1 365 0 236 261 33 11 chr1 167139418 167139510 -75524843 - MIR3 SINE MIR -1 207 114 207 186 0 0 chr1 167139533 167139576 -75524777 + (CCTA)n Simple_repeat Simple_repeat 1 43 0 815 197 0 0 chr1 167142268 167142400 -75521953 + FLAM_A SINE Alu 1 132 -1 216 0 0 0 chr1 167142506 167142530 -75521823 + (TG)n Simple_repeat Simple_repeat 2 25 0 255 79 0 0 chr1 167142531 167142569 -75521784 + (GA)n Simple_repeat Simple_repeat 2 39 0 657 245 109 35 chr1 167142577 167143045 -75521308 + MLT1G1 LTR MaLR 1 589 -1 181 349 111 32 chr1 167145060 167145186 -75519167 - L2 LINE L2 0 3272 3137 2275 55 0 61 chr1 167146176 167146487 -75517866 + AluY SINE Alu 1 292 -19 183 257 69 89 chr1 167146571 167146672 -75517681 + L2 LINE L2 3174 3272 0 279 213 27 53 chr1 167146962 167147037 -75517316 - MER5B DNA MER1_type -16 162 90 186 339 0 17 chr1 167147025 167147084 -75517269 + MER5A DNA MER1_type 131 188 -1 * 1236 236 113 36 chr1 167147680 167148096 -75516257 + MLT1J2 LTR MaLR 1 448 -2 196 308 143 11 chr1 167148241 167148332 -75516021 + MIR SINE MIR 49 151 -111 21 57 0 0 chr1 167148378 167148413 -75515940 + AT_rich Low_complexity Low_complexity 1 35 0 822 122 0 41 chr1 167148417 167148540 -75515813 - FLAM_C SINE Alu -19 124 7 423 281 31 0 chr1 167148699 167148827 -75515526 - MIR SINE MIR -29 233 102 491 242 8 8 chr1 167148892 167149012 -75515341 + L2 LINE L2 3192 3311 -2 516 284 0 0 chr1 167149381 167149490 -75514863 - MER81 DNA DNA -5 109 1 200 273 61 15 chr1 167149885 167149951 -75514402 - MIR SINE MIR -162 100 32 218 339 54 69 chr1 167150416 167150546 -75513807 + L2 LINE L2 3136 3263 -9 212 381 0 0 chr1 167152119 167152203 -75512150 + MIR3 SINE MIR 71 154 -54 443 228 241 0 chr1 167155108 167155253 -75509100 - MER5A DNA MER1_type 0 189 10 1257 146 97 45 chr1 167155270 167155578 -75508775 + MER33 DNA MER1_type 1 324 0 1005 261 39 26 chr1 167156596 167156902 -75507451 + MLT1J LTR MaLR 200 509 -2 584 270 47 17 chr1 167157073 167157306 -75507047 + MIR SINE MIR 2 241 -21 646 223 74 104 chr1 167157864 167158133 -75506220 - MLT1H LTR MaLR -64 485 225 405 223 45 18 chr1 167158310 167158422 -75505931 - MIR SINE MIR -37 225 111 405 58 0 0 chr1 167159154 167159206 -75505147 + (TG)n Simple_repeat Simple_repeat 2 53 0 246 62 0 0 chr1 167159418 167159450 -75504903 + (TC)n Simple_repeat Simple_repeat 1 32 0 509 335 30 4 chr1 167159697 167159930 -75504423 - MIR SINE MIR -11 251 13 259 318 31 23 chr1 167160868 167160997 -75503356 - L2 LINE L2 -9 3263 3134 1575 236 33 92 chr1 167162811 167163357 -75500996 + MER20B DNA MER1_type 3 516 -267 363 198 59 10 chr1 167163472 167163573 -75500780 + MER20B DNA MER1_type 515 620 -163 295 269 164 23 chr1 167165340 167165511 -75498842 + MLT1J2 LTR MaLR 246 440 -10 2454 227 47 78 chr1 167165977 167166792 -75497561 - MER21B LTR ERV1 -57 806 18 1480 187 93 10 chr1 167166800 167166850 -75497503 - MER2 DNA MER2_type -7 338 294 414 0 0 0 chr1 167166850 167166896 -75497457 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1480 187 93 10 chr1 167166896 167167155 -75497198 - MER2 DNA MER2_type -51 294 3 621 299 53 48 chr1 167168848 167169048 -75495305 + MLT1I LTR MaLR 47 221 -188 1110 166 22 45 chr1 167169048 167169271 -75495082 - MER20B DNA MER1_type 0 219 2 621 299 53 48 chr1 167169271 167169462 -75494891 + MLT1I LTR MaLR 221 409 0 426 245 84 19 chr1 167170087 167170242 -75494111 + MIR SINE MIR 98 262 0 426 228 11 0 chr1 167170345 167170437 -75493916 + MIR SINE MIR 129 221 -41 489 230 104 0 chr1 167170856 167170991 -75493362 - MIR3 SINE MIR -1 207 59 1302 231 43 3 chr1 167171287 167171586 -75492767 - L1ME1 LINE L1 -5 6161 5851 319 294 63 28 chr1 167171588 167171731 -75492622 + MIR SINE MIR 59 206 -56 182 329 71 0 chr1 167172438 167172523 -75491830 + MIR SINE MIR 21 111 -97 246 143 0 0 chr1 167172921 167172970 -75491383 + (TC)n Simple_repeat Simple_repeat 2 50 0 255 257 7 66 chr1 167173583 167173735 -75490618 + CT-rich Low_complexity Low_complexity 4 146 0 181 175 0 35 chr1 167173742 167173799 -75490554 + C-rich Low_complexity Low_complexity 6 60 0 214 254 22 15 chr1 167173819 167173953 -75490400 + CT-rich Low_complexity Low_complexity 1 135 0 237 65 0 0 chr1 167175300 167175331 -75489022 + (TC)n Simple_repeat Simple_repeat 1 31 0 183 80 0 0 chr1 167175400 167175425 -75488928 + (GA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chr1 167176407 167176436 -75487917 + (TG)n Simple_repeat Simple_repeat 1 29 0 231 36 0 0 chr1 167176435 167176463 -75487890 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 255 61 0 0 chr1 167176692 167176725 -75487628 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 229 210 65 0 chr1 167182358 167182420 -75481933 - L2 LINE L2 -1 3312 3247 275 366 0 8 chr1 167182510 167182633 -75481720 + MIR SINE MIR 28 149 -113 188 344 16 0 chr1 167182708 167182772 -75481581 + MIR SINE MIR 163 227 -35 21 0 0 0 chr1 167183023 167183044 -75481309 + AT_rich Low_complexity Low_complexity 1 21 0 2685 99 3 0 chr1 167183200 167183563 -75480790 - THE1B LTR MaLR 0 364 1 201 39 0 0 chr1 167183643 167183669 -75480684 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1006 213 13 31 chr1 167184850 167185075 -75479278 + MER58A DNA MER1_type 1 221 -3 566 236 155 41 chr1 167185294 167185565 -75478788 + LTR16B LTR ERVL 163 464 0 390 245 31 0 chr1 167185583 167185681 -75478672 - MER5A DNA MER1_type -80 109 9 1094 241 0 5 chr1 167185725 167185945 -75478408 - MER58A DNA MER1_type 0 224 6 2238 179 97 65 chr1 167186169 167186811 -75477542 - L1MB7 LINE L1 0 6184 5523 1933 153 0 3 chr1 167186847 167187142 -75477211 + AluJb SINE Alu 1 294 -18 259 296 78 72 chr1 167189291 167189598 -75474755 - L2 LINE L2 -1320 1994 1686 498 261 184 19 chr1 167189761 167189968 -75474385 - MIR SINE MIR -21 241 1 235 370 110 0 chr1 167190302 167190448 -75473905 + L2 LINE L2 2682 2843 -471 201 317 0 0 chr1 167190464 167190606 -75473747 + (CA)n Simple_repeat Simple_repeat 2 143 0 196 245 0 57 chr1 167190840 167190893 -75473460 + L2 LINE L2 3024 3073 -199 273 253 84 21 chr1 167190973 167191068 -75473285 - L2 LINE L2 -2 3270 3170 199 329 68 0 chr1 167191090 167191163 -75473190 + L2 LINE L2 3144 3221 -51 502 288 184 0 chr1 167192738 167192950 -75471403 + MIR SINE MIR 12 262 0 307 290 84 23 chr1 167193463 167193594 -75470759 - MIR3 SINE MIR -55 153 15 207 69 0 0 chr1 167195009 167195038 -75469315 + (TC)n Simple_repeat Simple_repeat 2 30 0 364 319 66 16 chr1 167195662 167195844 -75468509 - MIR SINE MIR 0 262 72 1976 161 56 3 chr1 167196167 167196491 -75467862 + MER7A DNA MER2_type 6 344 -2 29 28 0 0 chr1 167196769 167196805 -75467548 + AT_rich Low_complexity Low_complexity 1 36 0 226 226 22 124 chr1 167196805 167196942 -75467411 + L2 LINE L2 2698 2820 -494 362 270 45 0 chr1 167197001 167197090 -75467263 - L2 LINE L2 0 3313 3221 250 223 259 0 chr1 167197103 167197215 -75467138 - MIR SINE MIR 0 262 122 256 360 18 6 chr1 167197286 167197450 -75466903 - L1ME4a LINE L1 -179 5942 5777 586 293 108 24 chr1 167197451 167197748 -75466605 - L1ME4a LINE L1 -392 5729 5408 276 53 0 0 chr1 167197909 167197947 -75466406 + (TG)n Simple_repeat Simple_repeat 2 39 0 305 343 10 0 chr1 167198091 167198193 -75466160 + MER5A DNA MER1_type 4 106 -83 321 349 115 5 chr1 167201119 167201311 -75463042 + MIR SINE MIR 7 219 -43 11302 210 56 38 chr1 167201337 167203346 -75461007 - L1MA5A LINE L1 -5 6994 5023 2600 54 0 13 chr1 167203346 167203661 -75460692 - AluY SINE Alu 0 311 1 11302 210 56 38 chr1 167203661 167205042 -75459311 - L1MA5A LINE L1 -1976 5023 3669 671 196 0 58 chr1 167205042 167205180 -75459173 - FLAM_C SINE Alu -2 131 2 11302 210 56 38 chr1 167205180 167205207 -75459146 - L1MA5A LINE L1 -3330 3669 3644 1565 206 47 0 chr1 167205207 167205483 -75458870 + AluJo SINE Alu 1 289 -23 11302 210 56 38 chr1 167205483 167206159 -75458194 - L1MA5A LINE L1 -3355 3644 2982 2082 131 0 19 chr1 167206159 167206472 -75457881 - AluSg1 SINE Alu -2 307 1 11302 210 56 38 chr1 167206472 167207613 -75456740 - L1MA5A LINE L1 -4017 2982 1578 252 123 68 27 chr1 167207646 167207719 -75456634 + Zaphod DNA AcHobo 895 970 -3061 7831 101 6 11 chr1 167207779 167209240 -75455113 - L1PA8A LINE L1 -28 6103 4653 750 55 0 36 chr1 167209240 167209346 -75455007 + L1PA6 LINE L1 6049 6154 0 7831 101 6 11 chr1 167209346 167209914 -75454439 - L1PA8A LINE L1 -1478 4653 4084 1817 244 26 34 chr1 167209914 167210381 -75453972 - L1MA5A LINE L1 -5234 1615 1153 998 209 0 34 chr1 167211696 167211902 -75452451 - MER63A DNA MER1_type -11 199 1 471 251 51 131 chr1 167211959 167212234 -75452119 - MIR SINE MIR -1 261 9 279 287 70 40 chr1 167212276 167212426 -75451927 + MIR SINE MIR 30 191 -62 408 40 0 0 chr1 167212510 167212560 -75451793 + (CA)n Simple_repeat Simple_repeat 1 50 0 219 390 59 0 chr1 167212959 167213077 -75451276 + L2 LINE L2 3133 3257 -15 183 320 0 0 chr1 167213472 167213522 -75450831 - MER5B DNA MER1_type -118 60 11 208 184 66 79 chr1 167215529 167215605 -75448748 + L3 LINE CR1 1266 1340 -237 321 339 63 54 chr1 167217137 167217376 -75446977 - L2 LINE L2 0 3272 3032 870 304 105 20 chr1 167217568 167218182 -75446171 + L2 LINE L2 2644 3313 0 303 328 155 29 chr1 167218317 167218491 -75445862 - MER91A DNA MER1_type 0 196 1 209 308 60 93 chr1 167218567 167218749 -75445604 + MIR SINE MIR 21 196 -66 1721 55 5 0 chr1 167218912 167219129 -75445224 + L1PA7 LINE L1 5936 6153 -1 609 263 93 118 chr1 167219554 167220106 -75444247 - HAL1 LINE L1 -11 2496 1932 314 39 115 0 chr1 167220106 167220158 -75444195 + MER52C LTR ERV1 1108 1165 -113 609 263 93 118 chr1 167220158 167221049 -75443304 - HAL1 LINE L1 -575 1932 1039 22 0 0 0 chr1 167221161 167221183 -75443170 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 167221435 167221463 -75442890 + AT_rich Low_complexity Low_complexity 1 28 0 2823 3 0 0 chr1 167221829 167222133 -75442220 + AluY SINE Alu 1 304 -7 1651 209 79 8 chr1 167222428 167222796 -75441557 + MSTD LTR MaLR 1 394 -2 1432 296 67 14 chr1 167225046 167225873 -75438480 + L2 LINE L2 2510 3313 0 1151 212 32 0 chr1 167225888 167226105 -75438248 + MER58A DNA MER1_type 1 224 0 225 160 40 0 chr1 167227486 167227536 -75436817 + (TA)n Simple_repeat Simple_repeat 1 52 0 237 329 0 0 chr1 167227547 167227626 -75436727 - MIR SINE MIR -50 212 134 2192 124 0 0 chr1 167227907 167228197 -75436156 - AluSg SINE Alu -20 290 1 30 27 0 0 chr1 167228469 167228506 -75435847 + AT_rich Low_complexity Low_complexity 1 37 0 3150 143 25 4 chr1 167228506 167229060 -75435293 - L1MA4A LINE L1 -2 6301 5736 1024 195 102 4 chr1 167229380 167229626 -75434727 + L1MD2 LINE L1 6087 6356 -3 536 336 72 38 chr1 167229661 167230366 -75433987 - L1MEd LINE L1 -5353 766 38 185 406 8 15 chr1 167230420 167230553 -75433800 - L2 LINE L2 -597 2717 2586 938 264 75 51 chr1 167230677 167231091 -75433262 - L2 LINE L2 0 3313 2839 214 232 0 36 chr1 167231220 167231276 -75433077 + MIR SINE MIR 159 212 -50 607 323 59 48 chr1 167231795 167232151 -75432202 + L3 LINE CR1 803 1162 -415 293 338 225 20 chr1 167232270 167232421 -75431932 - L2 LINE L2 0 3272 3091 194 152 0 22 chr1 167233275 167233321 -75431032 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1986 163 0 0 chr1 167233546 167233852 -75430501 + AluSx SINE Alu 1 306 -6 216 257 68 54 chr1 167234751 167234825 -75429528 - MIR3 SINE MIR -7 201 127 357 71 18 0 chr1 167236043 167236099 -75428254 - L1PB2 LINE L1 -3 6148 6092 2172 67 0 57 chr1 167236742 167237061 -75427292 - AluY SINE Alu 0 302 1 219 167 24 0 chr1 167238759 167238801 -75425552 + (TGG)n Simple_repeat Simple_repeat 2 44 0 2761 104 82 22 chr1 167238809 167239262 -75425091 - L1PB1 LINE L1 -53 6098 5619 346 230 115 26 chr1 167240420 167240533 -75423820 + MER94 DNA DNA 1 123 -11 626 280 0 0 chr1 167240803 167240960 -75423393 + MER117 DNA MER1_type 1 157 -40 21 0 0 0 chr1 167241087 167241108 -75423245 + AT_rich Low_complexity Low_complexity 1 21 0 262 326 95 27 chr1 167241368 167241393 -75422960 + MIR3 SINE MIR 21 43 -165 1676 179 47 50 chr1 167241393 167241757 -75422596 - MLT1A1 LTR MaLR 0 365 3 262 326 95 27 chr1 167241757 167241878 -75422475 + MIR3 SINE MIR 43 177 -31 712 261 77 0 chr1 167241930 167242125 -75422228 - MER58A DNA MER1_type -13 211 2 497 164 96 0 chr1 167242149 167242253 -75422100 - MLT1F LTR MaLR -5 537 424 25 0 0 0 chr1 167243307 167243332 -75421021 + AT_rich Low_complexity Low_complexity 1 25 0 251 146 0 0 chr1 167244221 167244262 -75420091 - MLT1A1 LTR MaLR 0 365 325 3418 90 12 4 chr1 167244362 167244871 -75419482 + L1MA3 LINE L1 5793 6305 0 1088 156 17 26 chr1 167244883 167245114 -75419239 + L1 LINE L1 4993 5221 -925 188 387 53 13 chr1 167245246 167245396 -75418957 - L2 LINE L2 -189 3083 2928 305 229 98 69 chr1 167245434 167245679 -75418674 - Charlie2 DNA MER1_type 0 2862 2611 244 347 118 42 chr1 167246391 167246679 -75417674 + L2 LINE L2 2037 2346 -968 940 259 68 17 chr1 167247577 167247731 -75416622 - Charlie2 DNA MER1_type -292 2570 2425 821 160 13 0 chr1 167247731 167247887 -75416466 - L1MD1 LINE L1 -3 6239 6082 940 259 68 17 chr1 167247887 167248214 -75416139 - Charlie2 DNA MER1_type -437 2425 2064 254 192 0 7 chr1 167248792 167248877 -75415476 + MIR SINE MIR 113 251 -11 275 298 118 19 chr1 167249413 167249574 -75414779 - L2 LINE L2 -1376 1938 1762 1360 182 83 3 chr1 167249808 167250132 -75414221 - MLT1A1 LTR MaLR -15 350 1 591 15 0 0 chr1 167250556 167250624 -75413729 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1196 51 17 17 chr1 167250630 167250808 -75413545 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 271 96 39 0 chr1 167250808 167250860 -75413493 + CT-rich Low_complexity Low_complexity 2 55 0 1197 186 0 0 chr1 167250860 167251053 -75413300 - AluJb SINE Alu -33 279 87 284 310 0 0 chr1 167252389 167252460 -75411893 + L2 LINE L2 3186 3256 -16 1691 167 0 30 chr1 167252745 167253050 -75411303 + AluJo SINE Alu 9 304 -8 252 306 12 24 chr1 167253116 167253201 -75411152 - L1ME3A LINE L1 -99 6071 5988 320 188 10 52 chr1 167253294 167253390 -75410963 - L1ME3A LINE L1 -225 5945 5854 675 203 31 0 chr1 167253891 167254019 -75410334 - FLAM_C SINE Alu 0 133 2 200 260 67 48 chr1 167254362 167254466 -75409887 - MIR3 SINE MIR -15 193 88 1575 286 40 22 chr1 167254710 167255255 -75409098 - L2 LINE L2 -1724 1590 1036 280 119 0 0 chr1 167255332 167255374 -75408979 + L2 LINE L2 3268 3309 -4 1111 136 0 0 chr1 167256488 167256650 -75407703 + AluSq SINE Alu 140 301 -12 563 304 198 46 chr1 167257068 167257737 -75406616 - L2 LINE L2 -565 2749 2183 1675 207 25 10 chr1 167257737 167258133 -75406220 + L1MB8 LINE L1 5767 6168 -10 563 304 198 46 chr1 167258133 167258780 -75405573 - L2 LINE L2 -1131 2183 1233 306 0 0 0 chr1 167258802 167258836 -75405517 + (TG)n Simple_repeat Simple_repeat 1 34 0 1103 51 0 0 chr1 167258990 167259127 -75405226 + AluY SINE Alu 171 307 -4 260 229 12 0 chr1 167259474 167259557 -75404796 + GA-rich Low_complexity Low_complexity 3 86 0 558 253 79 34 chr1 167259557 167259735 -75404618 - MIR SINE MIR -10 252 67 237 360 150 0 chr1 167260056 167260209 -75404144 - MIR SINE MIR -3 259 84 7260 40 8 0 chr1 167260213 167261167 -75403186 + L1PA5 LINE L1 5186 6146 -8 25 0 0 0 chr1 167261167 167261192 -75403161 + AT_rich Low_complexity Low_complexity 1 25 0 199 359 91 27 chr1 167261248 167261375 -75402978 - L2 LINE L2 -1005 2309 2160 1001 60 5 46 chr1 167261375 167261589 -75402764 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 199 359 91 27 chr1 167261589 167261680 -75402673 - L2 LINE L2 -1154 2160 2076 260 286 0 75 chr1 167261719 167261852 -75402501 + MER112 DNA MER1_type 1 123 -137 25 51 0 0 chr1 167262242 167262281 -75402072 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr1 167262391 167262414 -75401939 + AT_rich Low_complexity Low_complexity 1 23 0 225 258 97 54 chr1 167262807 167262900 -75401453 - MIR SINE MIR -110 152 56 22 0 0 0 chr1 167263343 167263365 -75400988 + AT_rich Low_complexity Low_complexity 1 22 0 321 344 31 12 chr1 167263798 167263961 -75400392 - L2 LINE L2 -527 2787 2622 209 290 20 70 chr1 167264539 167264639 -75399714 + L2 LINE L2 3210 3304 -9 453 103 0 0 chr1 167265467 167265535 -75398818 + (TG)n Simple_repeat Simple_repeat 2 69 0 725 70 0 0 chr1 167266255 167266355 -75397998 - AluSp/q SINE Alu 0 313 214 261 305 9 38 chr1 167266379 167266484 -75397869 - MIR SINE MIR -24 238 137 215 360 48 8 chr1 167266516 167266641 -75397712 - MIR SINE MIR -121 141 12 21 71 0 0 chr1 167266664 167266706 -75397647 + AT_rich Low_complexity Low_complexity 1 42 0 208 0 0 59 chr1 167266709 167266743 -75397610 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 7833 13 3 1 chr1 167266744 167268205 -75396148 - L1PA3 LINE L1 0 6155 4691 718 265 56 21 chr1 167269618 167269852 -75394501 - MIR SINE MIR -3 259 18 752 212 45 45 chr1 167269887 167270085 -75394268 - MER58C DNA MER1_type -17 198 1 308 310 56 35 chr1 167271317 167271459 -75392894 - L2 LINE L2 -214 3058 2914 5804 151 13 6 chr1 167271511 167272621 -75391732 - L1MA4 LINE L1 -7 6293 5175 14892 175 26 8 chr1 167272744 167273619 -75390734 - L1M1 LINE L1 -643 5844 4987 182 62 31 0 chr1 167273619 167273651 -75390702 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 14892 175 26 8 chr1 167273651 167276216 -75388137 - L1M1 LINE L1 -1500 4987 2328 207 0 0 0 chr1 167276236 167276259 -75388094 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1995 52 0 0 chr1 167276264 167276512 -75387841 - L1PA5 LINE L1 -15 6139 5892 1400 235 40 49 chr1 167276512 167277129 -75387224 - L1M1 LINE L1 -3962 2366 1755 7250 166 30 37 chr1 167277256 167279019 -75385334 - L1M1 LINE L1 -4065 1263 16 5795 195 14 28 chr1 167279988 167281310 -75383043 - L1PB4 LINE L1 -945 5201 3898 1050 160 40 18 chr1 167281313 167281585 -75382768 + L1PB4 LINE L1 5196 5476 -680 1212 211 12 0 chr1 167281585 167281829 -75382524 + L1PB4 LINE L1 5898 6156 0 1050 160 40 18 chr1 167281829 167281842 -75382511 + L1PB4 LINE L1 5476 5487 -669 401 331 167 24 chr1 167283089 167283980 -75380373 - L2 LINE L2 0 3272 2187 22 0 0 0 chr1 167284544 167284566 -75379787 + AT_rich Low_complexity Low_complexity 1 22 0 186 242 15 30 chr1 167284680 167284746 -75379607 - L2 LINE L2 -243 3070 3006 1975 149 116 12 chr1 167285304 167285727 -75378626 - MLT1C LTR MaLR 0 467 1 617 356 119 16 chr1 167285897 167286268 -75378085 - L3 LINE CR1 -65 1512 1104 207 88 0 0 chr1 167286464 167286498 -75377855 + (TG)n Simple_repeat Simple_repeat 1 34 0 650 344 132 24 chr1 167287006 167287538 -75376815 - L3 LINE CR1 -872 705 117 359 320 35 6 chr1 167287771 167287943 -75376410 - LTR67 LTR ERVL 0 557 381 410 323 53 0 chr1 167288518 167288651 -75375702 + L2 LINE L2 3102 3241 -31 483 354 80 4 chr1 167288675 167288901 -75375452 + MIR SINE MIR 20 262 0 23 33 0 0 chr1 167290159 167290189 -75374164 + AT_rich Low_complexity Low_complexity 1 30 0 450 307 7 13 chr1 167290193 167290343 -75374010 - MIR SINE MIR -101 161 13 1951 241 24 18 chr1 167290695 167291194 -75373159 - MLT1D LTR MaLR 0 505 4 829 346 34 34 chr1 167292429 167293042 -75371311 - L2 LINE L2 -967 2347 1735 432 0 0 0 chr1 167293114 167293162 -75371191 + (TG)n Simple_repeat Simple_repeat 1 48 0 249 33 0 0 chr1 167293161 167293191 -75371162 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 2287 98 3 3 chr1 167293516 167293823 -75370530 + AluSp SINE Alu 1 307 -6 321 172 0 0 chr1 167295827 167295891 -75368462 + T-rich Low_complexity Low_complexity 5 68 0 3824 25 0 0 chr1 167298181 167298624 -75365729 + L1PA3 LINE L1 5710 6152 -3 24 0 0 0 chr1 167298624 167298648 -75365705 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 167298803 167298826 -75365527 + AT_rich Low_complexity Low_complexity 1 23 0 228 229 82 66 chr1 167300237 167300359 -75363994 + L1ME LINE L1 627 750 -5884 4843 100 5 33 chr1 167300927 167301677 -75362676 - L1PB1 LINE L1 -7 6144 5416 284 247 30 2 chr1 167301662 167301791 -75362562 - L1PB1 LINE L1 -992 5154 5023 345 287 8 33 chr1 167302065 167302187 -75362166 + L1ME LINE L1 1356 1474 -5173 347 269 52 35 chr1 167302193 167302460 -75361893 + L1ME LINE L1 1474 1663 -4879 3350 195 50 43 chr1 167302461 167303387 -75360966 + L1MD2 LINE L1 5219 6154 -205 207 0 0 0 chr1 167303387 167303410 -75360943 + (CA)n Simple_repeat Simple_repeat 2 24 0 3350 195 50 43 chr1 167303410 167303438 -75360915 + L1MD2 LINE L1 6154 6180 -179 225 274 0 0 chr1 167303463 167303514 -75360839 + L2 LINE L2 3217 3267 -5 21 0 0 0 chr1 167304768 167304789 -75359564 + AT_rich Low_complexity Low_complexity 1 21 0 489 155 318 0 chr1 167304789 167304937 -75359416 - L1MA3 LINE L1 -1 6304 6110 21 0 0 0 chr1 167304978 167304999 -75359354 + AT_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chr1 167305303 167305352 -75359001 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 340 293 34 20 chr1 167307487 167307634 -75356719 - MIR SINE MIR -8 254 106 21 0 0 0 chr1 167308040 167308061 -75356292 + AT_rich Low_complexity Low_complexity 1 21 0 1843 132 54 46 chr1 167308448 167308820 -75355533 - THE1C LTR MaLR 0 375 1 353 279 93 21 chr1 167309082 167309222 -75355131 - MIR3 SINE MIR -29 179 30 284 264 94 75 chr1 167310131 167310290 -75354063 + MER103 DNA DNA 2 163 -3 322 311 37 22 chr1 167311880 167312015 -75352338 - MIR3 SINE MIR -62 146 10 451 296 21 49 chr1 167312025 167312167 -75352186 - MER5B DNA MER1_type -34 144 7 180 0 0 0 chr1 167313206 167313226 -75351127 + (A)n Simple_repeat Simple_repeat 1 20 0 255 368 117 18 chr1 167315517 167315680 -75348673 - MIR SINE MIR -28 234 56 392 145 0 14 chr1 167316650 167316719 -75347634 + MIR SINE MIR 84 151 -111 211 307 141 73 chr1 167317058 167317469 -75346884 - L2 LINE L2 -4 3268 2830 417 39 0 0 chr1 167318252 167318303 -75346050 + (TG)n Simple_repeat Simple_repeat 2 52 0 541 357 17 17 chr1 167319918 167320218 -75344135 + L2 LINE L2 3014 3313 0 245 265 146 21 chr1 167320539 167320680 -75343673 - MIR SINE MIR -63 145 12 249 324 93 19 chr1 167322465 167322573 -75341780 - L2 LINE L2 -17 3255 3140 375 200 86 0 chr1 167322671 167322776 -75341577 - MLT1H LTR MaLR -4 545 432 487 251 75 75 chr1 167322828 167323107 -75341246 - MLT1H LTR MaLR -227 322 44 348 24 0 0 chr1 167323333 167323374 -75340979 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 274 111 52 chr1 167323393 167323528 -75340825 - MIR3 SINE MIR -63 145 3 195 271 203 0 chr1 167324658 167324717 -75339636 - L2 LINE L2 -11 3261 3191 288 0 0 0 chr1 167325041 167325073 -75339280 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 327 49 0 0 chr1 167325072 167325113 -75339240 + (GA)n Simple_repeat Simple_repeat 1 41 0 199 313 15 0 chr1 167325446 167325513 -75338840 + MIR SINE MIR 66 133 -75 419 208 0 0 chr1 167325656 167325728 -75338625 - MER81 DNA DNA -5 109 38 229 158 268 37 chr1 167325665 167325747 -75338606 + MER81 DNA DNA 14 114 0 * 209 316 99 35 chr1 167325859 167326030 -75338323 - L3b LINE CR1 -77 1506 1325 475 238 0 8 chr1 167326789 167326911 -75337442 + MER3 DNA MER1_type 46 166 -43 1536 155 120 0 chr1 167326925 167327267 -75337086 + MER3 DNA MER1_type 2238 2620 0 509 272 225 0 chr1 167328844 167329057 -75335296 - MIR SINE MIR 0 262 2 245 421 45 0 chr1 167329812 167329945 -75334408 - L3 LINE CR1 -67 1510 1372 * 386 321 15 22 chr1 167329943 167330077 -75334276 - MIR SINE MIR -60 148 16 * 672 240 201 29 chr1 167330065 167330378 -75333975 - L3 LINE CR1 -256 1321 955 261 0 0 0 chr1 167330826 167330855 -75333498 + (GA)n Simple_repeat Simple_repeat 2 30 0 237 333 76 18 chr1 167331571 167331742 -75332611 + MIR SINE MIR 46 226 -36 429 259 25 68 chr1 167332578 167332763 -75331590 + MIR SINE MIR 36 204 -58 400 284 67 82 chr1 167333126 167333542 -75330811 - MLT1J LTR MaLR -101 410 1 261 0 0 0 chr1 167334325 167334354 -75329999 + (TG)n Simple_repeat Simple_repeat 2 30 0 2256 255 54 29 chr1 167334477 167335335 -75329018 - L1ME3A LINE L1 -10 6160 5282 1186 179 0 10 chr1 167335451 167335647 -75328706 - AluJo SINE Alu -14 298 105 479 171 17 51 chr1 167335649 167335766 -75328587 + LOR1-int LTR ERV1 3840 3952 -4168 614 178 13 16 chr1 167335953 167336094 -75328259 + LOR1-int LTR ERV1 3954 6130 -628 * 1394 210 29 6 chr1 167336088 167336435 -75327918 + LOR1-int LTR ERV1 6376 7096 -6 422 264 7 21 chr1 167336440 167336580 -75327773 + MER4D LTR ERV1 2 139 -733 11121 160 12 44 chr1 167336684 167338523 -75325830 + MER66A-int LTR ERV1 4608 6504 -172 2374 101 0 19 chr1 167338523 167338841 -75325512 - AluSx SINE Alu 0 312 1 11121 160 12 44 chr1 167338841 167338895 -75325458 + MER66A-int LTR ERV1 6504 6558 -118 2634 61 0 0 chr1 167338895 167339206 -75325147 - AluY SINE Alu 0 311 1 11121 160 12 44 chr1 167339206 167339446 -75324907 + MER66A-int LTR ERV1 6558 6674 -2 1447 176 112 61 chr1 167339512 167339974 -75324379 + MER66A LTR ERV1 100 478 0 1549 270 104 43 chr1 167339988 167341391 -75322962 - L1MCa LINE L1 -2204 4222 2907 4644 204 31 21 chr1 167341391 167342460 -75321893 - Tigger6a DNA MER2_type -1 1082 3 1549 270 104 43 chr1 167342460 167342892 -75321461 - L1MCa LINE L1 -3519 2907 2301 2402 180 31 71 chr1 167342892 167343469 -75320884 - MLT2B3 LTR ERVL 0 554 1 1549 270 104 43 chr1 167343469 167343541 -75320812 - L1MCa LINE L1 -4125 2301 2235 651 289 75 16 chr1 167343638 167344238 -75320115 - L1MCa LINE L1 -4521 1905 1179 210 150 0 0 chr1 167344932 167344972 -75319381 + (T)n Simple_repeat Simple_repeat 1 40 0 1475 222 57 34 chr1 167345436 167345823 -75318530 - MSTD LTR MaLR 0 396 1 241 383 68 20 chr1 167346351 167346599 -75317754 - MIR SINE MIR -1 261 2 196 359 0 0 chr1 167346601 167346665 -75317688 - L2 LINE L2 -6 3266 3203 1282 217 50 22 chr1 167347512 167347835 -75316518 - MER58B DNA MER1_type 0 341 10 186 167 0 0 chr1 167348207 167348243 -75316110 + (CA)n Simple_repeat Simple_repeat 2 37 0 2460 50 3 3 chr1 167348298 167348597 -75315756 - AluY SINE Alu -12 299 1 212 349 106 0 chr1 167348848 167348980 -75315373 + L2 LINE L2 3127 3272 0 415 316 0 15 chr1 167349259 167349395 -75314958 - LTR16A LTR ERVL -9 441 308 2161 229 110 25 chr1 167349430 167350685 -75313668 + L1MEc LINE L1 1914 3233 -2982 329 324 133 2 chr1 167350940 167351345 -75313008 + L1M4 LINE L1 4388 4845 -1301 314 301 39 51 chr1 167351404 167351560 -75312793 - L1M4 LINE L1 -659 5519 5366 346 333 42 21 chr1 167351625 167351910 -75312443 - L1M4 LINE L1 -1109 5037 4747 1384 72 0 0 chr1 167351984 167352165 -75312188 + L1P LINE L1 2928 3108 -3038 398 335 32 32 chr1 167352389 167352610 -75311743 - L1M4 LINE L1 -2211 3935 3715 599 278 87 44 chr1 167352647 167353402 -75310951 - L1M4 LINE L1 -2502 3644 2857 1993 135 0 40 chr1 167353831 167354128 -75310225 - AluSx SINE Alu -26 286 2 477 238 0 0 chr1 167354146 167354268 -75310085 + (TA)n Simple_repeat Simple_repeat 2 123 0 284 87 0 43 chr1 167354268 167354314 -75310039 - L1MA9 LINE L1 -74 6238 6195 553 182 77 50 chr1 167354340 167354521 -75309832 - MER53 DNA DNA 0 189 4 24 0 0 0 chr1 167354526 167354550 -75309803 + AT_rich Low_complexity Low_complexity 1 24 0 333 287 0 59 chr1 167354833 167354969 -75309384 + MIR3 SINE MIR 40 167 -41 340 262 255 7 chr1 167355118 167355263 -75309090 + MER5A DNA MER1_type 9 189 0 180 171 29 71 chr1 167355201 167355271 -75309082 - MER5A DNA MER1_type -116 73 7 * 1946 168 9 35 chr1 167355363 167355709 -75308644 + MER1B DNA MER1_type 1 337 0 408 246 139 27 chr1 167356251 167356438 -75307915 - LTR16A LTR ERVL -10 440 233 279 0 0 0 chr1 167356911 167356942 -75307411 + (CA)n Simple_repeat Simple_repeat 2 32 0 317 183 84 0 chr1 167357242 167357313 -75307040 + MER116 DNA Mariner 1 77 -3 189 278 0 0 chr1 167357584 167357638 -75306715 + MIR SINE MIR 89 142 -66 700 50 30 0 chr1 167358195 167358295 -75306058 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 236 206 29 0 chr1 167358988 167359124 -75305229 + (TA)n Simple_repeat Simple_repeat 2 141 0 25 0 0 0 chr1 167359151 167359176 -75305177 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr1 167359298 167359336 -75305017 + AT_rich Low_complexity Low_complexity 1 38 0 30 59 0 0 chr1 167359508 167359559 -75304794 + AT_rich Low_complexity Low_complexity 1 51 0 195 341 58 39 chr1 167359617 167359822 -75304531 - MIR SINE MIR -17 245 37 183 80 0 0 chr1 167361348 167361373 -75302980 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 1842 216 24 91 chr1 167363591 167364127 -75300226 - MLT1F1 LTR MaLR 0 567 68 213 316 0 0 chr1 167364160 167364217 -75300136 - MIR SINE MIR 0 262 206 229 360 122 7 chr1 167364627 167364774 -75299579 + L2 LINE L2 3103 3266 -6 371 358 61 3 chr1 167366557 167366850 -75297503 - L1M4 LINE L1 -3583 2563 2254 703 245 23 48 chr1 167367580 167367795 -75296558 + LTR41 LTR ERVL 1 239 -556 401 218 109 34 chr1 167368048 167368195 -75296158 - LTR41 LTR ERVL -10 763 606 1412 103 5 0 chr1 167368304 167368488 -75295865 - AluSx SINE Alu -127 185 1 902 198 18 0 chr1 167368491 167368658 -75295695 - AluJo SINE Alu -19 293 124 185 166 69 0 chr1 167368658 167368803 -75295550 + (TA)n Simple_repeat Simple_repeat 1 155 0 495 133 0 12 chr1 167368805 167368888 -75295465 - AluJo SINE Alu -195 117 36 2091 93 29 4 chr1 167368942 167369243 -75295110 - AluSp SINE Alu 0 309 2 911 208 102 53 chr1 167369355 167369677 -75294676 + L2 LINE L2 2975 3312 -1 1316 210 32 4 chr1 167369847 167370099 -75294254 + AluJb SINE Alu 35 293 -19 186 133 0 0 chr1 167370132 167370162 -75294191 + (T)n Simple_repeat Simple_repeat 1 30 0 1724 118 25 0 chr1 167370162 167370400 -75293953 - AluSg SINE Alu -62 248 5 1295 87 0 60 chr1 167370500 167370684 -75293669 - AluSq SINE Alu -140 173 1 437 177 21 21 chr1 167371143 167371239 -75293114 + MIR SINE MIR 70 165 -97 212 284 74 21 chr1 167371245 167371340 -75293013 + MIR3 SINE MIR 13 112 -96 205 258 2 0 chr1 167372901 167372954 -75291399 - MIR SINE MIR -108 100 47 2076 99 10 27 chr1 167372981 167373273 -75291080 - AluSx SINE Alu -23 289 3 2190 117 7 0 chr1 167373278 167373577 -75290776 - AluSx SINE Alu -11 301 1 818 161 0 0 chr1 167373588 167373718 -75290635 - AluSp/q SINE Alu -21 292 163 394 93 0 0 chr1 167373721 167373775 -75290578 - Alu SINE Alu -246 56 3 3206 122 69 68 chr1 167374150 167374845 -75289508 - pTR5 LTR ERV1 0 2438 1743 221 238 32 0 chr1 167375089 167375152 -75289201 + (CGG)n Simple_repeat Simple_repeat 2 66 0 427 244 62 25 chr1 167375556 167375716 -75288637 + MIR SINE MIR 85 250 -12 2436 48 7 3 chr1 167375842 167376134 -75288219 - AluSg SINE Alu -17 293 1 390 200 9 17 chr1 167376138 167376253 -75288100 + CT-rich Low_complexity Low_complexity 1 114 0 2144 104 10 13 chr1 167376273 167376572 -75287781 - AluSx SINE Alu -13 299 2 216 0 0 0 chr1 167376572 167376596 -75287757 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 754 176 0 22 chr1 167376614 167376750 -75287603 - FLAM_C SINE Alu 0 133 1 1591 183 49 3 chr1 167377295 167377579 -75286774 + AluJb SINE Alu 1 297 -15 260 264 64 100 chr1 167377886 167378026 -75286327 - LTR41 LTR ERVL -135 638 504 897 165 39 22 chr1 167378352 167378534 -75285819 - LTR41 LTR ERVL -586 187 3 1182 82 0 6 chr1 167378624 167378782 -75285571 - AluY SINE Alu -1 310 154 22 70 0 0 chr1 167379018 167379061 -75285292 + AT_rich Low_complexity Low_complexity 1 43 0 217 231 0 19 chr1 167379106 167379158 -75285195 + (TG)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr1 167379731 167379753 -75284600 + AT_rich Low_complexity Low_complexity 1 22 0 2036 232 98 17 chr1 167379865 167380387 -75283966 - MLT1E LTR MaLR 0 593 30 2025 143 26 12 chr1 167380843 167381186 -75283167 + MER7A DNA MER2_type 1 346 0 198 143 0 0 chr1 167381329 167381364 -75282989 + (TATG)n Simple_repeat Simple_repeat 4 38 0 4180 150 14 45 chr1 167381499 167382290 -75282063 - L1MC1 LINE L1 0 6333 5568 1364 162 24 48 chr1 167382417 167382552 -75281801 - Tigger2 DNA MER2_type -6 2712 2575 2189 114 3 0 chr1 167382552 167382851 -75281502 + AluSx SINE Alu 3 302 -10 198 0 0 0 chr1 167382854 167382876 -75281477 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1364 162 24 48 chr1 167382876 167383026 -75281327 - Tigger2 DNA MER2_type -145 2573 2430 3007 23 0 0 chr1 167383149 167383495 -75280858 - L1P1 LINE L1 -1075 5071 4726 * 3071 13 2 0 chr1 167383490 167384025 -75280328 + L1P1 LINE L1 5064 5599 -556 328 207 58 83 chr1 167384183 167384207 -75280146 - MIR SINE MIR -21 241 218 2172 131 3 0 chr1 167384207 167384512 -75279841 - AluSx SINE Alu -6 306 1 328 207 58 83 chr1 167384512 167384608 -75279745 - MIR SINE MIR -44 218 124 230 357 10 10 chr1 167385305 167385403 -75278950 + L2 LINE L2 3161 3258 -14 234 238 143 40 chr1 167386357 167386483 -75277870 - MIR3 SINE MIR -4 204 66 1450 241 89 39 chr1 167388434 167388874 -75275479 - MLT1E LTR MaLR 0 593 163 707 188 23 0 chr1 167388995 167389123 -75275230 - MLT1E LTR MaLR -521 133 3 277 239 14 0 chr1 167389325 167389396 -75274957 + L2 LINE L2 3201 3272 0 22 35 0 0 chr1 167389574 167389603 -75274750 + AT_rich Low_complexity Low_complexity 1 29 0 342 216 65 43 chr1 167389706 167389845 -75274508 - L1 LINE L1 -1312 4834 4693 343 325 32 0 chr1 167390480 167390606 -75273747 - LTR16C LTR ERVL -359 132 3 235 258 151 0 chr1 167391075 167391168 -75273185 - MIR3 SINE MIR -21 187 81 682 271 87 14 chr1 167391367 167391585 -75272768 + MIR SINE MIR 1 234 -28 637 261 0 0 chr1 167393081 167393238 -75271115 - MIR SINE MIR -88 174 18 778 293 9 5 chr1 167395129 167395351 -75269002 + MIR SINE MIR 10 232 -30 318 273 58 32 chr1 167396072 167396226 -75268127 - MIR3 SINE MIR -27 181 24 502 261 153 0 chr1 167396990 167397147 -75267206 + MER5A DNA MER1_type 9 189 0 282 370 16 0 chr1 167398379 167398506 -75265847 - L2 LINE L2 -2 3270 3142 240 240 80 27 chr1 167399111 167399186 -75265167 - L2 LINE L2 -14 3299 3221 180 300 83 8 chr1 167399947 167400067 -75264286 - L2 LINE L2 -1 3312 3184 336 326 123 0 chr1 167400721 167400908 -75263445 - MIR SINE MIR -2 260 51 551 134 21 10 chr1 167402272 167402369 -75261984 + L1MA5 LINE L1 6201 6298 -2 439 340 61 28 chr1 167402733 167402874 -75261479 - L3 LINE CR1 -10 1567 1432 2482 72 0 0 chr1 167402874 167403167 -75261186 - AluY SINE Alu -16 295 3 439 340 61 28 chr1 167403167 167403351 -75261002 - L3 LINE CR1 -145 1432 1231 180 328 142 33 chr1 167403453 167403636 -75260717 - L3 LINE CR1 -1165 412 210 359 320 80 60 chr1 167404287 167404687 -75259666 + L2 LINE L2 2844 3251 -21 201 302 19 0 chr1 167404750 167404803 -75259550 + MIR SINE MIR 13 66 -196 412 264 83 21 chr1 167404812 167404956 -75259397 + MIR SINE MIR 36 188 -74 325 318 56 56 chr1 167405474 167405550 -75258803 + L3 LINE CR1 721 796 -781 1190 235 147 47 chr1 167405550 167405958 -75258395 - MLT1J2 LTR MaLR -1 449 1 325 318 56 56 chr1 167405958 167406076 -75258277 + L3 LINE CR1 795 915 -662 181 303 26 13 chr1 167406219 167406295 -75258058 + MIR SINE MIR 73 149 -113 1066 151 0 29 chr1 167406379 167406551 -75257802 + AluSg/x SINE Alu 134 300 -12 621 288 6 40 chr1 167406652 167406915 -75257438 - MLT1H LTR MaLR -140 269 55 202 182 0 0 chr1 167407046 167407079 -75257274 + (ATGGTG)n Simple_repeat Simple_repeat 4 36 0 434 337 80 20 chr1 167407094 167407343 -75257010 + L3 LINE CR1 1033 1296 -281 297 269 87 10 chr1 167408206 167408310 -75256043 + MIR SINE MIR 32 143 -65 1366 166 39 9 chr1 167410071 167410300 -75254053 - MER46A DNA MER2_type 0 236 1 570 67 0 0 chr1 167410334 167410409 -75253944 + (TG)n Simple_repeat Simple_repeat 2 76 0 409 130 52 26 chr1 167411907 167411984 -75252369 - FLAM_A SINE Alu -17 125 47 816 144 0 8 chr1 167411987 167412105 -75252248 - FLAM_A SINE Alu -13 120 4 2141 104 0 0 chr1 167412216 167412523 -75251830 - AluSg SINE Alu 0 307 1 873 282 36 4 chr1 167412684 167412936 -75251417 + MIR SINE MIR 3 262 0 310 250 0 48 chr1 167413375 167413459 -75250894 + MIR SINE MIR 46 125 -137 274 259 74 83 chr1 167413479 167413587 -75250766 + MIR SINE MIR 10 116 -92 27 0 0 0 chr1 167413668 167413695 -75250658 + AT_rich Low_complexity Low_complexity 1 27 0 27 49 0 0 chr1 167414299 167414340 -75250013 + AT_rich Low_complexity Low_complexity 1 41 0 5993 154 46 1 chr1 167414340 167415734 -75248619 - L1MA6 LINE L1 0 6300 4846 24 0 0 0 chr1 167415734 167415758 -75248595 + AT_rich Low_complexity Low_complexity 1 24 0 4448 186 50 8 chr1 167416109 167416260 -75248093 + Charlie1 DNA MER1_type 1396 1539 -1222 315 104 0 0 chr1 167416260 167416308 -75248045 + (CA)n Simple_repeat Simple_repeat 2 49 0 4448 186 50 8 chr1 167416308 167417364 -75246989 + Charlie1 DNA MER1_type 1539 2745 -16 262 266 13 13 chr1 167417379 167417458 -75246895 - MIR3 SINE MIR -49 159 81 417 295 147 71 chr1 167419441 167420031 -75244322 - L2 LINE L2 -2 3311 2678 1246 263 122 15 chr1 167420252 167420401 -75243952 - L2 LINE L2 0 3313 3181 16398 120 17 21 chr1 167420401 167422828 -75241525 + Tigger1 DNA MER2_type 1 2418 0 1246 263 122 15 chr1 167422828 167423139 -75241214 - L2 LINE L2 -132 3181 2804 4242 288 173 29 chr1 167423177 167424130 -75240223 - L2 LINE L2 -674 2640 1826 2261 106 0 0 chr1 167424130 167424423 -75239930 + AluSc SINE Alu 1 293 -16 4242 288 173 29 chr1 167424423 167425636 -75238717 - L2 LINE L2 -1488 1826 162 634 292 55 25 chr1 167425723 167425925 -75238428 + L2 LINE L2 1061 1268 -2046 8042 81 19 5 chr1 167426161 167427268 -75237085 + L1P LINE L1 3943 5065 -1081 280 341 63 36 chr1 167427280 167427503 -75236850 + L2 LINE L2 2526 2754 -560 337 313 45 28 chr1 167427549 167427725 -75236628 + MIR3 SINE MIR 2 187 -66 2160 117 0 0 chr1 167427737 167428049 -75236304 + AluY SINE Alu 1 312 0 395 300 66 126 chr1 167428154 167428376 -75235977 + L2 LINE L2 2816 2995 -277 2392 77 0 3 chr1 167428376 167428688 -75235665 + AluY SINE Alu 1 311 0 395 300 66 126 chr1 167428688 167428951 -75235402 + L2 LINE L2 2995 3272 0 217 240 0 20 chr1 167433044 167433094 -75231259 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 315 271 0 0 chr1 167433111 167433181 -75231172 + MIR SINE MIR 81 150 -112 339 292 85 27 chr1 167433357 167433527 -75230826 + MIR SINE MIR 15 192 -64 383 293 52 17 chr1 167434311 167434427 -75229926 - L2 LINE L2 -20 3252 3133 182 194 0 0 chr1 167434590 167434626 -75229727 + L2 LINE L2 3275 3310 -3 214 268 18 98 chr1 167437166 167437278 -75227075 - MIR SINE MIR -74 134 31 184 291 36 0 chr1 167437411 167437466 -75226887 + MIR SINE MIR 85 141 -67 205 324 44 62 chr1 167438381 167438571 -75225782 + MIR SINE MIR 5 191 -71 462 235 29 0 chr1 167438588 167438690 -75225663 + L2 LINE L2 3208 3312 -1 329 316 26 8 chr1 167438771 167438888 -75225465 + MIR SINE MIR 31 149 -59 201 180 56 22 chr1 167439050 167439139 -75225214 + (TTATA)n Simple_repeat Simple_repeat 4 95 0 610 318 82 40 chr1 167441549 167441929 -75222424 - L2 LINE L2 0 3313 2918 201 74 0 0 chr1 167443611 167443638 -75220715 + (CA)n Simple_repeat Simple_repeat 1 27 0 239 259 17 0 chr1 167447137 167447195 -75217158 - L3 LINE CR1 0 1577 1519 2234 109 6 10 chr1 167447237 167447548 -75216805 + AluSg SINE Alu 1 310 0 2045 141 0 7 chr1 167447561 167447859 -75216494 + AluSx SINE Alu 2 297 -15 187 284 148 34 chr1 167447861 167447949 -75216404 - MIR SINE MIR -94 114 17 361 314 9 0 chr1 167448677 167448782 -75215571 + MIR3 SINE MIR 49 154 -54 540 0 0 0 chr1 167449082 167449142 -75215211 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 641 144 27 0 chr1 167449681 167449792 -75214561 - MER5A DNA MER1_type -72 117 4 706 243 68 19 chr1 167450642 167450848 -75213505 + MIR SINE MIR 32 247 -15 228 214 0 0 chr1 167450894 167450950 -75213403 + GA-rich Low_complexity Low_complexity 5 60 0 5082 199 41 14 chr1 167451606 167453573 -75210780 - L1MB7 LINE L1 -1 6183 4160 877 329 21 24 chr1 167453876 167454731 -75209622 - HERV16 LTR ERVL -1567 4197 3278 2071 325 55 26 chr1 167454738 167455083 -75209270 - HERV16 LTR ERVL -1905 3091 2758 2191 181 34 13 chr1 167455083 167455469 -75208884 - MSTD LTR MaLR 0 396 3 2071 325 55 26 chr1 167455469 167456147 -75208206 - HERV16 LTR ERVL -2238 2758 2162 7254 227 38 9 chr1 167456147 167457411 -75206942 - L1P LINE L1 -2155 3991 2656 2163 69 0 0 chr1 167457411 167457697 -75206656 + AluY SINE Alu 34 311 0 7254 227 38 9 chr1 167457697 167458247 -75206106 - L1P LINE L1 -3490 2656 2124 6068 155 29 12 chr1 167458245 167460369 -75203984 + L1PA16 LINE L1 4000 6165 -1 * 2684 312 70 70 chr1 167460372 167462543 -75201810 - HERV16 LTR ERVL -2823 2173 2 772 296 77 31 chr1 167462593 167462944 -75201409 - LTR16A LTR ERVL -88 369 3 829 268 106 39 chr1 167463458 167463872 -75200481 + MLT1J2 LTR MaLR 9 450 0 1268 136 32 81 chr1 167465064 167465373 -75198980 + MER33 DNA MER1_type 26 319 -5 189 321 112 51 chr1 167465437 167465652 -75198701 + L2 LINE L2 2750 2977 -337 300 223 22 3 chr1 167465739 167465870 -75198483 - MER96 DNA MER1_type? 0 175 7 183 80 0 0 chr1 167467792 167467817 -75196536 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 212 83 0 28 chr1 167468594 167468630 -75195723 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 186 171 0 0 chr1 167470021 167470062 -75194291 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 439 270 51 7 chr1 167470238 167470375 -75193978 + MER5A DNA MER1_type 37 179 -10 229 196 0 20 chr1 167470409 167470460 -75193893 + MIR3 SINE MIR 155 204 -4 391 339 40 0 chr1 167470781 167470905 -75193448 - MIR SINE MIR -87 175 47 433 218 16 73 chr1 167471251 167471295 -75193058 - MER103 DNA DNA -45 121 76 1817 218 64 31 chr1 167471295 167471781 -75192572 + MLT1D LTR MaLR 4 505 0 433 218 16 73 chr1 167471781 167471860 -75192493 - MER103 DNA DNA -90 76 5 216 315 39 62 chr1 167474561 167474691 -75189662 - L2 LINE L2 -5 3308 3182 3989 245 102 62 chr1 167475182 167475959 -75188394 + HAL1 LINE L1 11 756 -1751 870 233 26 63 chr1 167475959 167476229 -75188124 - MIR SINE MIR -1 261 2 3989 245 102 62 chr1 167476229 167477690 -75186663 + HAL1 LINE L1 756 2483 -24 1513 118 55 4 chr1 167477808 167478045 -75186308 + L1PA11 LINE L1 5915 6163 -11 745 321 59 55 chr1 167478970 167479294 -75185059 + L2 LINE L2 2823 3151 -162 1915 189 12 0 chr1 167479294 167479632 -75184721 - MER2 DNA MER2_type -1 343 2 745 321 59 55 chr1 167479632 167479796 -75184557 + L2 LINE L2 3151 3313 0 1795 167 10 3 chr1 167479833 167480133 -75184220 - AluJb SINE Alu -10 302 1 21 0 0 0 chr1 167480626 167480647 -75183706 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr1 167481104 167481130 -75183223 + (TG)n Simple_repeat Simple_repeat 2 27 0 5622 75 0 37 chr1 167481277 167481987 -75182366 + LTR12 LTR ERV1 1 684 -4 19661 96 21 12 chr1 167481991 167484750 -75179603 + HERV9 LTR ERV1 1 2784 -5615 2043 60 0 8 chr1 167484750 167485000 -75179353 + HERV9 LTR ERV1 2892 3139 -5260 1294 64 0 35 chr1 167485007 167485178 -75179175 + HERV9 LTR ERV1 4080 4244 -4155 1558 85 0 5 chr1 167485179 167485380 -75178973 + AluSg/x SINE Alu 111 310 0 2187 130 0 3 chr1 167485586 167485894 -75178459 - AluSx SINE Alu -5 307 1 370 281 207 18 chr1 167486464 167486628 -75177725 + MIR SINE MIR 30 224 -38 186 200 0 25 chr1 167487733 167487773 -75176580 + MIR SINE MIR 124 162 -100 21 0 0 0 chr1 167488551 167488572 -75175781 + AT_rich Low_complexity Low_complexity 1 21 0 206 246 98 0 chr1 167488836 167488897 -75175456 - MIR SINE MIR -115 147 81 198 0 0 0 chr1 167489331 167489353 -75175000 + (A)n Simple_repeat Simple_repeat 1 22 0 214 359 77 13 chr1 167489638 167489716 -75174637 - MIR SINE MIR -96 112 30 551 311 51 0 chr1 167489806 167490002 -75174351 + MIR SINE MIR 3 208 -54 366 232 21 11 chr1 167491371 167491466 -75172887 + MIR3 SINE MIR 109 204 -4 373 299 40 40 chr1 167492956 167493157 -75171196 - L3b LINE CR1 -131 1452 1252 294 359 99 8 chr1 167494235 167494366 -75169987 + MIR3 SINE MIR 41 183 -25 396 300 22 89 chr1 167494566 167494836 -75169517 + MIR SINE MIR 5 256 -6 192 346 158 0 chr1 167494953 167495054 -75169299 - MIR SINE MIR -55 153 37 328 256 138 71 chr1 167495566 167495906 -75168447 + L1ME4a LINE L1 5731 6093 -28 30 0 0 0 chr1 167497701 167497731 -75166622 + AT_rich Low_complexity Low_complexity 1 30 0 200 180 0 20 chr1 167497901 167497951 -75166402 + CT-rich Low_complexity Low_complexity 4 52 0 183 184 0 0 chr1 167498486 167498524 -75165829 + GA-rich Low_complexity Low_complexity 1 38 0 185 0 40 0 chr1 167499079 167499104 -75165249 + (CA)n Simple_repeat Simple_repeat 2 27 0 332 298 33 0 chr1 167499376 167499497 -75164856 - MIR SINE MIR -10 252 128 312 369 140 21 chr1 167499596 167499981 -75164372 - L3 LINE CR1 -2 1575 1145 683 325 118 35 chr1 167500214 167500614 -75163739 - L3 LINE CR1 -471 1106 674 2738 221 29 32 chr1 167500634 167502026 -75162327 - L1MB1 LINE L1 -22 6146 4739 264 277 0 0 chr1 167502048 167502113 -75162240 - L3 LINE CR1 -916 661 597 * 563 232 8 8 chr1 167502106 167502231 -75162122 + L2 LINE L2 3189 3313 0 353 316 35 9 chr1 167502272 167502386 -75161967 - L3 LINE CR1 -1036 541 425 453 299 132 6 chr1 167503209 167503383 -75160970 - MIR SINE MIR -65 197 2 1428 165 43 0 chr1 167503515 167503745 -75160608 + MLT1A1 LTR MaLR 126 365 0 9778 175 44 17 chr1 167503747 167505435 -75158918 + MLT1A1-int LTR MaLR 2 1735 0 2338 134 8 32 chr1 167505435 167505571 -75158782 + MLT1A1 LTR MaLR 1 139 -226 2460 132 5 22 chr1 167505571 167505941 -75158412 + THE1B LTR MaLR 1 364 0 2338 134 8 32 chr1 167505941 167506178 -75158175 + MLT1A1 LTR MaLR 139 365 0 323 365 44 0 chr1 167506442 167506579 -75157774 + MIR SINE MIR 16 158 -104 2554 245 57 62 chr1 167506608 167507413 -75156940 + MER21B LTR ERV1 12 812 -51 187 276 253 0 chr1 167507438 167507525 -75156828 + MIR SINE MIR 154 262 0 192 200 40 20 chr1 167508596 167508646 -75155707 + L2 LINE L2 3222 3272 0 21 0 0 0 chr1 167508646 167508667 -75155686 + AT_rich Low_complexity Low_complexity 1 21 0 408 314 33 0 chr1 167509012 167509165 -75155188 - MIR3 SINE MIR -15 193 36 2132 118 10 10 chr1 167509882 167510187 -75154166 + AluSq SINE Alu 1 305 -8 1802 273 39 15 chr1 167510199 167510789 -75153564 + L1ME3A LINE L1 5566 6169 -1 377 285 70 25 chr1 167511336 167511494 -75152859 - MIR SINE MIR -69 193 29 268 288 79 36 chr1 167512057 167512196 -75152157 + MIR SINE MIR 102 246 -16 265 273 149 16 chr1 167512774 167512895 -75151458 - MIR SINE MIR -36 226 90 199 277 99 20 chr1 167513091 167513192 -75151161 - L2 LINE L2 -7 3265 3157 201 287 62 82 chr1 167514094 167514289 -75150064 + MIR SINE MIR 34 224 -38 429 295 18 96 chr1 167514765 167514920 -75149433 - MIR SINE MIR -1 261 136 1034 158 0 29 chr1 167514920 167515091 -75149262 + FRAM SINE Alu 1 166 0 429 295 18 96 chr1 167515091 167515216 -75149137 - MIR SINE MIR -126 136 3 410 206 98 0 chr1 167516163 167516255 -75148098 + MER5A DNA MER1_type 6 106 -83 366 207 69 52 chr1 167516515 167516631 -75147722 + LTR33 LTR ERVL 15 132 -389 397 245 134 74 chr1 167516707 167516923 -75147430 + LTR33 LTR ERVL 290 518 -3 2422 97 0 3 chr1 167517139 167517449 -75146904 + AluSc SINE Alu 1 309 0 1332 107 30 95 chr1 167517477 167517739 -75146614 - L1MB3 LINE L1 -230 5953 5709 412 328 88 50 chr1 167517739 167518123 -75146230 - L2 LINE L2 -890 2424 2026 23 33 0 0 chr1 167518224 167518254 -75146099 + AT_rich Low_complexity Low_complexity 1 30 0 204 40 0 0 chr1 167518511 167518536 -75145817 + (GA)n Simple_repeat Simple_repeat 2 26 0 448 322 34 39 chr1 167518670 167518875 -75145478 + L3b LINE CR1 1354 1557 -26 510 290 60 44 chr1 167519641 167519893 -75144460 - MIR SINE MIR -6 256 1 271 310 259 0 chr1 167520191 167520388 -75143965 - MIR SINE MIR -7 255 8 693 185 172 0 chr1 167520424 167520575 -75143778 - MER5A DNA MER1_type 0 189 13 335 169 28 56 chr1 167522409 167522480 -75141873 - Tigger4(Zombi) DNA MER2_type 0 2731 2663 736 296 24 20 chr1 167523160 167523413 -75140940 + MIR SINE MIR 3 256 -6 1503 187 10 69 chr1 167523508 167523859 -75140494 - L1MD2 LINE L1 -2 6357 6001 330 315 9 9 chr1 167524039 167524150 -75140203 + GA-rich Low_complexity Low_complexity 2 112 0 1766 135 58 0 chr1 167524466 167524726 -75139627 + AluSx SINE Alu 6 280 -32 396 0 0 0 chr1 167524727 167524771 -75139582 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 673 229 62 35 chr1 167524772 167525030 -75139323 - L1ME4a LINE L1 -12 6109 5845 257 346 142 19 chr1 167525531 167526228 -75138125 + L2 LINE L2 1653 2435 -879 505 289 7 7 chr1 167526492 167526634 -75137719 - L2 LINE L2 -7 3306 3165 219 396 60 0 chr1 167526820 167526969 -75137384 + L2 LINE L2 2920 3077 -195 469 261 36 104 chr1 167528024 167528361 -75135992 + L2 LINE L2 2942 3255 -17 193 273 15 30 chr1 167530349 167530415 -75133938 + MIR SINE MIR 79 143 -119 245 297 0 110 chr1 167530472 167530627 -75133726 + MIR SINE MIR 28 165 -97 202 171 73 98 chr1 167532521 167532603 -75131750 - MIR SINE MIR -72 190 111 264 384 34 41 chr1 167534013 167534159 -75130194 - L2 LINE L2 -6 3266 3122 23 33 0 0 chr1 167536206 167536236 -75128117 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr1 167536363 167536396 -75127957 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr1 167537064 167537099 -75127254 + AT_rich Low_complexity Low_complexity 1 35 0 2166 113 7 13 chr1 167538759 167539069 -75125284 + AluSc SINE Alu 2 309 0 453 202 0 0 chr1 167539086 167539170 -75125183 - MIR SINE MIR -108 154 71 971 178 14 42 chr1 167540213 167540427 -75123926 + L1ME LINE L1 5522 5729 -392 208 346 119 10 chr1 167540493 167540594 -75123759 - L2 LINE L2 -5 3267 3156 1840 173 104 37 chr1 167540743 167541148 -75123205 - MSTB1 LTR MaLR 0 432 1 295 270 60 0 chr1 167541148 167541248 -75123105 + L1ME4a LINE L1 6005 6110 -11 197 278 144 10 chr1 167542326 167542423 -75121930 - MIR SINE MIR -133 129 20 286 296 45 0 chr1 167544590 167544678 -75119675 - MIR SINE MIR -56 152 61 338 275 12 0 chr1 167544766 167544846 -75119507 + MIR3 SINE MIR 111 191 -17 431 222 264 7 chr1 167544860 167545004 -75119349 + MER5A DNA MER1_type 9 189 0 2113 137 0 3 chr1 167545412 167545725 -75118628 - AluSx SINE Alu 0 312 1 913 179 158 11 chr1 167545966 167546156 -75118197 - MER20 DNA MER1_type -1 218 1 346 278 119 0 chr1 167546570 167546696 -75117657 - MIR3 SINE MIR -4 204 64 270 269 206 21 chr1 167547925 167548066 -75116287 - MIR SINE MIR -92 170 4 491 321 41 23 chr1 167549869 167550006 -75114347 + MIR SINE MIR 15 159 -103 2186 112 6 3 chr1 167550006 167550318 -75114035 + AluSq SINE Alu 1 313 0 491 321 41 23 chr1 167550318 167550401 -75113952 + MIR SINE MIR 159 239 -23 22 35 0 0 chr1 167552726 167552755 -75111598 + AT_rich Low_complexity Low_complexity 1 29 0 22 88 0 0 chr1 167552813 167552870 -75111483 + AT_rich Low_complexity Low_complexity 1 57 0 550 254 24 18 chr1 167552893 167553058 -75111295 + L1MD3 LINE L1 7826 7991 -4 2612 44 0 0 chr1 167553325 167553623 -75110730 - AluY SINE Alu -13 298 1 210 105 0 0 chr1 167554730 167554768 -75109585 + (CAGT)n Simple_repeat Simple_repeat 4 41 0 6052 205 55 15 chr1 167554961 167556355 -75107998 - Charlie1a DNA MER1_type 0 1455 7 300 292 83 33 chr1 167556398 167556518 -75107835 - L2 LINE L2 -10 3262 3137 2476 66 0 0 chr1 167557208 167557510 -75106843 + AluY SINE Alu 1 302 -9 260 218 158 30 chr1 167557762 167557895 -75106458 - L2 LINE L2 -1274 2040 1891 544 98 0 72 chr1 167558095 167558288 -75106065 + (TA)n Simple_repeat Simple_repeat 2 180 0 789 80 0 71 chr1 167558306 167558984 -75105369 + (TA)n Simple_repeat Simple_repeat 1 630 0 276 360 12 0 chr1 167559011 167559097 -75105256 + L2 LINE L2 3161 3247 -25 833 234 58 19 chr1 167559845 167560050 -75104303 + MER58A DNA MER1_type 1 213 -11 617 269 114 65 chr1 167560334 167560746 -75103607 + MLT1J LTR MaLR 28 459 -52 500 282 39 97 chr1 167561510 167562104 -75102249 + L1ME LINE L1 4359 4880 -1266 2412 164 32 32 chr1 167562104 167562536 -75101817 + MSTB1 LTR MaLR 1 432 0 500 282 39 97 chr1 167562536 167562876 -75101477 + L1ME LINE L1 4880 5238 -908 807 303 21 32 chr1 167562938 167563331 -75101022 + L1ME LINE L1 5431 5823 -343 234 244 0 0 chr1 167563339 167563384 -75100969 + MER3 DNA MER1_type 3 47 -162 988 228 20 5 chr1 167563387 167563589 -75100764 - MER3 DNA MER1_type -3 206 2 812 147 89 85 chr1 167563961 167565061 -75099292 + L1MC2 LINE L1 5674 6768 -986 2354 106 0 0 chr1 167565061 167565362 -75098991 + AluSg SINE Alu 1 301 -9 812 147 89 85 chr1 167565362 167565641 -75098712 + L1MC2 LINE L1 6768 7044 -710 192 77 0 0 chr1 167565641 167565667 -75098686 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 812 147 89 85 chr1 167565667 167565719 -75098634 + L1MC2 LINE L1 7044 7094 -660 235 282 12 12 chr1 167565719 167565804 -75098549 + MLT1F1 LTR MaLR 35 119 -448 812 147 89 85 chr1 167565804 167566358 -75097995 + L1MC2 LINE L1 7094 7644 -110 240 59 0 0 chr1 167566358 167566392 -75097961 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1611 199 17 0 chr1 167566394 167566685 -75097668 - AluJb SINE Alu -16 296 1 812 147 89 85 chr1 167566685 167566728 -75097625 + L1MC2 LINE L1 7644 7754 0 505 276 135 33 chr1 167566901 167567266 -75097087 - L1ME3A LINE L1 -233 5937 5531 29 47 0 0 chr1 167567424 167567467 -75096886 + AT_rich Low_complexity Low_complexity 1 43 0 349 106 0 30 chr1 167567727 167567793 -75096560 + (TG)n Simple_repeat Simple_repeat 2 65 0 2178 106 3 29 chr1 167567847 167568159 -75096194 + AluSq SINE Alu 1 304 -9 344 369 7 8 chr1 167569214 167569355 -75094998 + MIR SINE MIR 5 145 -63 217 303 53 26 chr1 167569340 167569416 -75094937 - MIR SINE MIR -177 85 8 * 218 299 56 96 chr1 167570558 167570809 -75093544 - L2 LINE L2 -226 3046 2806 250 152 15 30 chr1 167573787 167573853 -75090500 + GA-rich Low_complexity Low_complexity 3 67 0 228 300 38 12 chr1 167573969 167574049 -75090304 + G-rich Low_complexity Low_complexity 1 82 0 180 0 0 0 chr1 167574864 167574884 -75089469 + (CCA)n Simple_repeat Simple_repeat 1 20 0 258 171 61 85 chr1 167575672 167575754 -75088599 - MIR3 SINE MIR -14 194 115 184 327 55 0 chr1 167575887 167575942 -75088411 - L2 LINE L2 -4 3309 3252 701 229 120 0 chr1 167576557 167576749 -75087604 - L1ME3 LINE L1 -189 5973 5759 250 317 67 8 chr1 167577377 167577497 -75086856 + MIR SINE MIR 120 246 -16 1544 251 103 17 chr1 167577615 167578098 -75086255 + L1ME3 LINE L1 5636 6160 -2 193 164 18 36 chr1 167579036 167579091 -75085262 + CT-rich Low_complexity Low_complexity 4 57 0 324 0 0 0 chr1 167579465 167579501 -75084852 + (TG)n Simple_repeat Simple_repeat 2 37 0 228 67 0 0 chr1 167580527 167580557 -75083796 + (CGG)n Simple_repeat Simple_repeat 2 31 0 211 342 34 17 chr1 167583184 167583301 -75081052 - MIR3 SINE MIR -54 154 36 1303 155 85 15 chr1 167585313 167585584 -75078769 + MER33 DNA MER1_type 10 299 -25 378 0 0 0 chr1 167585584 167585626 -75078727 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1174 129 0 0 chr1 167586201 167586395 -75077958 + AluSg/x SINE Alu 132 325 0 387 304 14 27 chr1 167586772 167586920 -75077433 + MIR SINE MIR 107 252 -10 316 309 99 69 chr1 167586930 167587513 -75076840 + L2 LINE L2 2294 2894 -420 333 227 17 109 chr1 167587809 167587928 -75076425 - L2 LINE L2 -15 3298 3191 720 261 107 13 chr1 167587980 167588214 -75076139 - MIR SINE MIR -1 261 6 207 293 0 0 chr1 167588310 167588351 -75076002 - L2 LINE L2 -218 3054 3014 229 193 0 53 chr1 167588902 167588959 -75075394 + L1ME3A LINE L1 6019 6072 -98 259 337 0 11 chr1 167588973 167589062 -75075291 + (CATA)n Simple_repeat Simple_repeat 2 89 0 330 286 67 25 chr1 167589160 167589279 -75075074 - MIR SINE MIR -21 241 118 258 273 104 65 chr1 167589386 167589540 -75074813 + MIR SINE MIR 29 188 -74 21 36 0 0 chr1 167589894 167589922 -75074431 + AT_rich Low_complexity Low_complexity 1 28 0 757 228 19 62 chr1 167590020 167590231 -75074122 - MIR SINE MIR -9 253 52 273 174 23 35 chr1 167591174 167591260 -75073093 + CT-rich Low_complexity Low_complexity 3 87 0 442 290 92 29 chr1 167591753 167591991 -75072362 + MIR SINE MIR 10 262 0 180 0 0 0 chr1 167592007 167592027 -75072326 + (TTG)n Simple_repeat Simple_repeat 2 21 0 * 249 108 0 0 chr1 167592025 167592062 -75072291 + (T)n Simple_repeat Simple_repeat 1 37 0 258 32 0 0 chr1 167592209 167592240 -75072113 + (T)n Simple_repeat Simple_repeat 1 31 0 542 247 184 0 chr1 167593967 167594125 -75070228 - MER5A DNA MER1_type 0 189 3 475 172 35 35 chr1 167594286 167594402 -75069951 - MER103 DNA DNA -50 116 1 981 268 8 0 chr1 167594639 167594878 -75069475 - MIR SINE MIR -5 257 17 258 195 11 126 chr1 167595344 167595431 -75068922 + MIR3 SINE MIR 87 163 -45 614 99 0 12 chr1 167595436 167595517 -75068836 - MADE1 DNA Mariner 0 80 1 320 227 0 92 chr1 167596804 167596967 -75067386 + L1MC5 LINE L1 7789 7936 -25 581 294 91 14 chr1 167596968 167597189 -75067164 + MIR SINE MIR 25 262 0 878 228 43 87 chr1 167597315 167597684 -75066669 - L2 LINE L2 -12 3301 2949 578 265 91 32 chr1 167599807 167600026 -75064327 + MIR SINE MIR 15 246 -16 2236 106 0 3 chr1 167600532 167600825 -75063528 - AluSg SINE Alu -18 292 1 305 304 12 117 chr1 167602913 167603084 -75061269 - MIR3 SINE MIR -29 179 27 231 36 0 0 chr1 167603835 167603863 -75060490 + (TG)n Simple_repeat Simple_repeat 1 28 0 195 408 17 8 chr1 167604043 167604163 -75060190 - L2 LINE L2 -2 3270 3150 570 265 112 23 chr1 167604206 167604466 -75059887 + MARNA DNA Mariner 284 566 -20 303 254 30 15 chr1 167604626 167604693 -75059660 + MIR SINE MIR 48 115 -147 245 224 172 60 chr1 167605000 167605134 -75059219 + MIR SINE MIR 108 256 -6 274 350 77 21 chr1 167605269 167605412 -75058941 - MER5B DNA MER1_type 0 178 28 2407 99 0 0 chr1 167605412 167605716 -75058637 + AluSq SINE Alu 6 309 -4 488 287 16 0 chr1 167605716 167605838 -75058515 + MER5A DNA MER1_type 66 189 0 * 541 211 73 0 chr1 167605838 167605957 -75058396 - MIR SINE MIR -127 135 8 1292 182 103 57 chr1 167605984 167606122 -75058231 + MLT1B LTR MaLR 1 131 -243 2707 127 38 19 chr1 167606122 167606541 -75057812 - MSTA LTR MaLR -1 427 1 1292 182 103 57 chr1 167606541 167606773 -75057580 + MLT1B LTR MaLR 131 372 -2 191 222 0 0 chr1 167607524 167607569 -75056784 - L2 LINE L2 -1037 2277 2233 211 240 110 30 chr1 167607827 167607927 -75056426 - L2 LINE L2 -1304 2010 1903 274 358 36 22 chr1 167608568 167608705 -75055648 - L3b LINE CR1 -167 1416 1278 1030 293 107 33 chr1 167608869 167609077 -75055276 + L2 LINE L2 2467 2658 -655 2086 117 3 19 chr1 167609077 167609394 -75054959 + AluSq SINE Alu 1 312 -1 1030 293 107 33 chr1 167609394 167609882 -75054471 + L2 LINE L2 2658 3211 -102 21 71 0 0 chr1 167609922 167609964 -75054389 + AT_rich Low_complexity Low_complexity 1 42 0 2139 79 25 0 chr1 167609988 167610265 -75054088 + L1PB2 LINE L1 5868 6151 0 8543 24 0 1 chr1 167610761 167611767 -75052586 - L1P LINE L1 -2484 3662 2658 7125 36 0 1 chr1 167611767 167612563 -75051790 + L1PA4 LINE L1 5356 6155 0 22 0 0 0 chr1 167612631 167612653 -75051700 + AT_rich Low_complexity Low_complexity 1 22 0 320 362 40 7 chr1 167612739 167612888 -75051465 - L2 LINE L2 -1 3271 3118 337 239 83 73 chr1 167613104 167613213 -75051140 + MER5B DNA MER1_type 78 176 -2 653 273 100 28 chr1 167613275 167613634 -75050719 - L2 LINE L2 -964 2350 1966 792 297 79 0 chr1 167613751 167614132 -75050221 - L1ME4a LINE L1 0 6121 5711 1882 145 23 23 chr1 167614211 167614515 -75049838 - AluSq SINE Alu -9 304 1 2258 205 34 60 chr1 167614902 167615439 -75048914 + MLT1F LTR MaLR 1 523 -19 242 282 154 0 chr1 167615518 167615596 -75048757 - L1ME4a LINE L1 -422 5699 5610 437 307 133 18 chr1 167617069 167617294 -75047059 + MIR SINE MIR 4 254 -8 395 313 45 0 chr1 167618118 167618252 -75046101 - MER91C DNA MER1_type 0 140 1 192 77 0 0 chr1 167618286 167618312 -75046041 + (A)n Simple_repeat Simple_repeat 1 26 0 373 207 78 9 chr1 167618904 167619020 -75045333 - L1ME4a LINE L1 -4 6117 5994 483 184 19 19 chr1 167619622 167619725 -75044628 + MER3 DNA MER1_type 54 156 -53 1419 171 50 84 chr1 167619729 167620132 -75044221 + MER3 DNA MER1_type 2236 2624 0 252 239 42 28 chr1 167620363 167620434 -75043919 - L1MC4 LINE L1 -7 8035 7964 3084 209 61 88 chr1 167620435 167621138 -75043215 - L1MC4 LINE L1 -307 7735 7015 428 0 19 0 chr1 167621138 167621190 -75043163 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 3084 209 61 88 chr1 167621190 167621335 -75043018 - L1MC4 LINE L1 -1027 7015 6868 2454 78 0 0 chr1 167621335 167621631 -75042722 + AluY SINE Alu 1 296 -15 575 296 55 15 chr1 167621636 167621835 -75042518 - MER63A DNA MER1_type -3 207 1 3084 209 61 88 chr1 167621835 167621996 -75042357 - L1MC4 LINE L1 -1178 6864 6746 897 208 36 54 chr1 167622292 167622513 -75041840 - MER20 DNA MER1_type 0 219 3 2254 95 3 3 chr1 167623221 167623515 -75040838 + AluSq SINE Alu 1 294 -19 2464 198 12 12 chr1 167623851 167624341 -75040012 - L1MA7 LINE L1 -11 6484 5995 2183 197 119 6 chr1 167624341 167624870 -75039483 - L1MA7 LINE L1 -1511 4839 4251 * 3504 258 52 45 chr1 167624867 167627260 -75037093 - L1MA7 LINE L1 -3655 2695 602 1961 243 68 96 chr1 167627239 167627999 -75036354 - L1MA7 LINE L1 -5541 740 2 * 2416 161 33 24 chr1 167629318 167629740 -75034613 + MSTB LTR MaLR 1 426 0 500 259 49 14 chr1 167630220 167630363 -75033990 + MIR SINE MIR 89 236 -26 26 30 0 0 chr1 167630650 167630683 -75033670 + AT_rich Low_complexity Low_complexity 1 33 0 190 229 0 0 chr1 167631201 167631236 -75033117 + MIR SINE MIR 106 140 -68 2209 131 0 0 chr1 167631377 167631683 -75032670 - AluSx SINE Alu -6 306 1 332 238 117 73 chr1 167631685 167631891 -75032462 - MIR SINE MIR -35 227 13 887 56 28 0 chr1 167632040 167632148 -75032205 - AluSp SINE Alu -202 111 1 24 32 0 0 chr1 167632378 167632409 -75031944 + AT_rich Low_complexity Low_complexity 1 31 0 2035 164 0 0 chr1 167632611 167632921 -75031432 - AluSx SINE Alu -2 310 1 353 335 110 46 chr1 167633954 167634235 -75030118 + L2 LINE L2 2957 3255 -17 351 216 26 9 chr1 167634242 167634358 -75029995 + GA-rich Low_complexity Low_complexity 4 121 0 352 284 15 75 chr1 167634467 167634601 -75029752 - L2 LINE L2 -6 3307 3182 188 314 14 57 chr1 167635311 167635381 -75028972 + L3b LINE CR1 1510 1576 -7 254 335 178 0 chr1 167638374 167638559 -75025794 - MIR SINE MIR 0 262 45 22 35 0 0 chr1 167639727 167639756 -75024597 + AT_rich Low_complexity Low_complexity 1 29 0 321 26 0 0 chr1 167639978 167640016 -75024337 + (CA)n Simple_repeat Simple_repeat 2 39 0 276 237 17 0 chr1 167640725 167640784 -75023569 + GA-rich Low_complexity Low_complexity 6 65 0 212 367 68 59 chr1 167640807 167641145 -75023208 + L2 LINE L2 2916 3256 -16 287 339 88 64 chr1 167642868 167643538 -75020815 - L2 LINE L2 -83 3189 2503 190 164 18 55 chr1 167644965 167645020 -75019333 - MIR3 SINE MIR -11 197 145 375 321 36 15 chr1 167645309 167645446 -75018907 - MIR3 SINE MIR -46 162 23 1014 226 5 10 chr1 167647117 167647321 -75017032 + MER58A DNA MER1_type 3 205 -19 22 0 0 0 chr1 167647712 167647734 -75016619 + AT_rich Low_complexity Low_complexity 1 22 0 735 287 25 29 chr1 167648125 167648369 -75015984 - MIR SINE MIR -6 256 14 523 346 28 20 chr1 167648660 167648916 -75015437 + MIR SINE MIR 2 262 0 675 282 53 19 chr1 167649917 167650123 -75014230 + MIR SINE MIR 28 240 -22 198 103 0 0 chr1 167650135 167650164 -75014189 + (ATG)n Simple_repeat Simple_repeat 1 29 0 198 291 128 95 chr1 167650895 167651043 -75013310 - MIR3 SINE MIR -55 153 1 274 383 9 9 chr1 167651407 167651522 -75012831 - L3 LINE CR1 -176 1401 1287 246 62 0 0 chr1 167652364 167652396 -75011957 + (TA)n Simple_repeat Simple_repeat 2 33 0 765 110 0 0 chr1 167654495 167654604 -75009749 - L1PB1 LINE L1 -1 6150 6042 282 106 0 0 chr1 167654611 167654658 -75009695 + (CA)n Simple_repeat Simple_repeat 1 47 0 227 282 0 28 chr1 167655081 167655152 -75009201 + 7SK RNA RNA 2 70 -123 476 207 7 82 chr1 167655843 167655978 -75008375 - L2 LINE L2 0 3313 3189 1854 154 35 0 chr1 167656316 167656602 -75007751 - AluSx SINE Alu -16 296 1 1772 186 0 13 chr1 167658034 167658346 -75006007 - AluJo SINE Alu -4 308 1 222 309 29 0 chr1 167658583 167658651 -75005702 - L2 LINE L2 -1 3312 3243 874 138 69 0 chr1 167660108 167660253 -75004100 - L1MB7 LINE L1 -19 6165 6011 182 330 93 25 chr1 167661381 167661499 -75002854 - L2 LINE L2 -340 2974 2849 247 318 112 19 chr1 167661763 167661870 -75002483 + MIR3 SINE MIR 86 202 -6 188 186 157 29 chr1 167664380 167664450 -74999903 + MIR3 SINE MIR 110 188 -20 1450 187 14 14 chr1 167664611 167664894 -74999459 - AluJb SINE Alu -2 310 28 333 248 24 65 chr1 167666407 167666566 -74997787 - MIR SINE MIR -50 212 60 286 184 143 61 chr1 167669586 167669684 -74994669 + MIR SINE MIR 111 216 -46 2380 96 0 0 chr1 167670872 167671173 -74993180 - AluSg SINE Alu -9 301 1 213 39 0 0 chr1 167671404 167671430 -74992923 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1863 154 17 0 chr1 167671437 167671729 -74992624 - AluJo SINE Alu -1 311 15 834 61 0 0 chr1 167671809 167671907 -74992446 + AluYb8 SINE Alu 11 108 -210 180 0 0 0 chr1 167673853 167673873 -74990480 + (TC)n Simple_repeat Simple_repeat 1 20 0 1280 238 115 26 chr1 167674296 167674721 -74989632 - MLT1C LTR MaLR -4 463 1 27 29 0 0 chr1 167675965 167675999 -74988354 + AT_rich Low_complexity Low_complexity 1 34 0 724 284 4 49 chr1 167676680 167676923 -74987430 + L3 LINE CR1 1119 1350 -227 208 308 100 54 chr1 167676943 167677073 -74987280 - L2 LINE L2 -20 3252 3117 2024 140 34 0 chr1 167677151 167677444 -74986909 + AluSx SINE Alu 5 307 -5 195 333 14 104 chr1 167677496 167677640 -74986713 + L3 LINE CR1 1371 1501 -76 220 317 12 12 chr1 167677739 167677821 -74986532 - MER5A DNA MER1_type -105 84 3 261 0 0 0 chr1 167678708 167678737 -74985616 + (CA)n Simple_repeat Simple_repeat 2 30 0 521 298 37 0 chr1 167679157 167679318 -74985035 + MIR SINE MIR 79 245 -17 239 301 146 0 chr1 167679298 167679401 -74984952 + L2 LINE L2 3150 3267 -5 * 6810 137 67 17 chr1 167681137 167681280 -74983073 - Tigger3b DNA MER2_type -1797 1231 1097 2107 146 40 15 chr1 167681280 167681609 -74982744 + MER1B DNA MER1_type 1 337 0 6810 137 67 17 chr1 167681609 167682635 -74981718 - Tigger3b DNA MER2_type -1931 1097 4 1678 197 52 9 chr1 167682776 167683101 -74981252 - MER58B DNA MER1_type -2 339 1 230 304 27 17 chr1 167683116 167683270 -74981083 - MIR SINE MIR -49 213 3 189 231 19 19 chr1 167684097 167684149 -74980204 - MIR SINE MIR -16 246 195 1981 210 96 12 chr1 167684150 167684640 -74979713 - MER92B LTR ERV1 0 636 106 440 313 8 8 chr1 167684677 167684811 -74979542 - MIR SINE MIR -99 163 30 230 278 90 15 chr1 167685599 167685732 -74978621 + MER103 DNA DNA 22 164 -2 316 291 203 6 chr1 167685795 167685953 -74978400 - MIR SINE MIR -2 260 72 267 320 85 65 chr1 167687148 167687898 -74976455 + L2 LINE L2 2479 3267 -5 951 307 150 41 chr1 167688697 167689824 -74974529 + L2 LINE L2 2046 3311 -2 185 143 0 29 chr1 167690179 167690214 -74974139 - L2 LINE L2 -71 3201 3168 338 250 11 45 chr1 167691346 167691434 -74972919 + L2 LINE L2 3188 3272 0 194 256 0 0 chr1 167692523 167692566 -74971787 - L2 LINE L2 0 3272 3230 284 188 63 37 chr1 167693027 167693152 -74971201 + FLAM_A SINE Alu 40 93 -40 194 128 26 0 chr1 167693457 167693496 -74970857 + (TAA)n Simple_repeat Simple_repeat 2 41 0 402 279 87 19 chr1 167693509 167693670 -74970683 - MIR SINE MIR -17 245 74 484 347 51 15 chr1 167693830 167694026 -74970327 - MIR3 SINE MIR -3 205 3 1729 174 79 9 chr1 167694046 167694363 -74969990 + MER44D DNA MER2_type 1 609 0 800 283 61 42 chr1 167694868 167695228 -74969125 + L2 LINE L2 2928 3294 -19 627 221 162 0 chr1 167695929 167696083 -74968270 + MER5A DNA MER1_type 11 189 0 2331 71 10 7 chr1 167696385 167696682 -74967671 - AluY SINE Alu -13 298 1 434 308 30 6 chr1 167696692 167696861 -74967492 + MIR SINE MIR 53 225 -37 303 250 0 0 chr1 167697141 167697201 -74967152 + L2 LINE L2 3213 3272 0 246 309 62 0 chr1 167698198 167698279 -74966074 - L2 LINE L2 0 3272 3187 216 217 33 0 chr1 167698578 167698670 -74965683 + (TA)n Simple_repeat Simple_repeat 2 96 0 29 28 0 0 chr1 167698683 167698719 -74965634 + AT_rich Low_complexity Low_complexity 1 36 0 252 361 71 22 chr1 167699066 167699249 -74965104 - L2 LINE L2 -173 3099 2908 2411 169 102 9 chr1 167699739 167700200 -74964153 + MLT1D LTR MaLR 2 505 0 2465 68 0 0 chr1 167700302 167700595 -74963758 + AluY SINE Alu 1 293 -18 234 362 91 32 chr1 167701082 167701745 -74962608 - L2 LINE L2 -1216 2098 1397 2225 92 4 0 chr1 167701760 167702041 -74962312 + AluSp SINE Alu 1 282 -31 294 29 0 0 chr1 167702047 167702082 -74962271 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 238 292 83 0 chr1 167702356 167702428 -74961925 - L2 LINE L2 -11 3261 3184 575 243 59 75 chr1 167705198 167705437 -74958916 - MER112 DNA MER1_type -11 249 15 342 80 0 0 chr1 167706323 167706373 -74957980 + (TC)n Simple_repeat Simple_repeat 1 50 0 483 255 89 38 chr1 167707095 167707252 -74957101 - MIR SINE MIR 0 262 98 193 337 24 12 chr1 167707348 167707431 -74956922 + MIR3 SINE MIR 111 194 -14 * 250 267 60 52 chr1 167707429 167707545 -74956808 + MIR SINE MIR 75 191 -71 201 265 0 0 chr1 167707900 167707949 -74956404 - L2 LINE L2 -12 3260 3212 317 234 0 0 chr1 167707954 167708018 -74956335 - MIR SINE MIR -114 148 85 262 273 27 9 chr1 167708233 167708343 -74956010 + (TA)n Simple_repeat Simple_repeat 1 112 0 192 343 20 10 chr1 167709180 167709279 -74955074 + MIR3 SINE MIR 108 207 -1 * 206 330 59 51 chr1 167709261 167709379 -74954974 + MIR SINE MIR 73 191 -71 1902 121 40 34 chr1 167709407 167709704 -74954649 + AluSx SINE Alu 1 299 -13 27 0 0 0 chr1 167710198 167710225 -74954128 + AT_rich Low_complexity Low_complexity 1 27 0 661 117 8 8 chr1 167710376 167710496 -74953857 + (GGAA)n Simple_repeat Simple_repeat 4 123 0 2789 178 39 15 chr1 167710724 167711270 -74953083 + MER89 LTR ERV1 1 559 0 320 244 51 0 chr1 167711413 167711491 -74952862 + MER103 DNA DNA 3 84 -82 200 206 0 0 chr1 167712545 167712579 -74951774 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 216 118 0 chr1 167712720 167712771 -74951582 - L2 LINE L2 0 3313 3257 * 873 225 63 9 chr1 167712748 167712970 -74951383 - MIR SINE MIR -28 234 1 661 82 21 10 chr1 167713098 167713195 -74951158 + MER4A LTR ERV1 1 98 -566 1702 131 163 83 chr1 167713195 167713396 -74950957 + MER4A LTR ERV1 261 444 -220 393 22 0 0 chr1 167713396 167713442 -74950911 + (TA)n Simple_repeat Simple_repeat 1 46 0 1702 131 163 83 chr1 167713442 167713614 -74950739 + MER4A LTR ERV1 444 664 0 357 195 122 24 chr1 167713901 167714024 -74950329 - MIR SINE MIR -81 181 47 1392 66 6 0 chr1 167714655 167714822 -74949531 - AluSp SINE Alu -15 298 131 1930 141 0 14 chr1 167714845 167715128 -74949225 - AluJb SINE Alu -22 290 12 192 77 0 0 chr1 167715605 167715631 -74948722 + (TCC)n Simple_repeat Simple_repeat 2 27 0 954 167 223 40 chr1 167715745 167716099 -74948254 - Charlie1 DNA MER1_type 0 2761 2343 270 324 0 0 chr1 167716097 167716168 -74948185 - Charlie1 DNA MER1_type -2690 71 1 * 580 210 57 6 chr1 167717720 167717877 -74946476 + MIR SINE MIR 88 252 -10 229 306 58 74 chr1 167718361 167718482 -74945871 + L2 LINE L2 3154 3272 0 247 358 53 0 chr1 167718744 167718839 -74945514 + L2 LINE L2 3146 3245 -27 227 255 0 0 chr1 167718859 167718906 -74945447 + G-rich Low_complexity Low_complexity 2 48 0 306 337 10 2 chr1 167719043 167719152 -74945201 + MIR SINE MIR 38 145 -63 203 190 224 0 chr1 167719530 167719588 -74944765 + MIR3 SINE MIR 120 190 -18 268 132 0 0 chr1 167719682 167719720 -74944633 - MER81 DNA DNA -34 80 43 739 244 61 9 chr1 167720735 167720964 -74943389 - MIR SINE MIR -9 253 13 236 302 16 54 chr1 167720998 167721127 -74943226 - MIR SINE MIR -1 261 138 290 245 61 20 chr1 167721266 167721364 -74942989 - MIR SINE MIR -156 106 5 412 339 0 23 chr1 167722469 167722646 -74941707 - MIR SINE MIR -88 174 2 282 143 0 0 chr1 167722842 167722891 -74941462 + (CA)n Simple_repeat Simple_repeat 2 50 0 2317 194 19 15 chr1 167724693 167725166 -74939187 + MLT1D LTR MaLR 21 495 -10 207 314 14 0 chr1 167726797 167726867 -74937486 + CT-rich Low_complexity Low_complexity 2 72 0 1743 154 0 28 chr1 167727481 167727767 -74936586 - AluJo SINE Alu -22 290 13 24 0 0 0 chr1 167727867 167727891 -74936462 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 167730087 167730108 -74934245 + AT_rich Low_complexity Low_complexity 1 21 0 261 109 0 0 chr1 167730597 167730643 -74933710 + (CA)n Simple_repeat Simple_repeat 1 46 0 407 313 41 79 chr1 167731338 167731705 -74932648 + L2 LINE L2 2918 3270 -2 291 272 88 0 chr1 167732053 167732178 -74932175 - MIR SINE MIR -70 192 57 186 345 50 25 chr1 167732997 167733116 -74931237 - L2 LINE L2 -10 3262 3141 407 295 24 12 chr1 167733252 167733418 -74930935 - MER5B DNA MER1_type -9 169 2 221 343 20 20 chr1 167733427 167733529 -74930824 + L2 LINE L2 3193 3294 -19 202 217 0 0 chr1 167734957 167735003 -74929350 + L2 LINE L2 3225 3270 -2 499 333 36 5 chr1 167735346 167735568 -74928785 - MIR SINE MIR -6 256 28 308 290 56 9 chr1 167735840 167735947 -74928406 - L2 LINE L2 -4 3268 3157 21 0 0 0 chr1 167736790 167736811 -74927542 + AT_rich Low_complexity Low_complexity 1 21 0 1069 254 115 56 chr1 167736841 167737578 -74926775 + MER20B DNA MER1_type 2 782 -2 853 255 12 29 chr1 167738581 167738824 -74925529 + MIR SINE MIR 2 240 -22 197 250 107 57 chr1 167739262 167739402 -74924951 - L2 LINE L2 -1 3312 3166 226 182 125 57 chr1 167739827 167739915 -74924438 - MLT1K LTR MaLR -157 431 338 207 0 0 0 chr1 167740383 167740406 -74923947 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 477 148 0 0 chr1 167741128 167741209 -74923144 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 315 192 0 0 chr1 167741264 167741337 -74923016 + (TG)n Simple_repeat Simple_repeat 2 74 0 329 274 123 85 chr1 167742038 167742355 -74921998 + L2 LINE L2 2924 3252 -20 280 317 16 36 chr1 167742378 167742475 -74921878 + MIR SINE MIR 31 125 -100 1976 169 48 0 chr1 167742475 167742807 -74921546 - MER7A DNA MER2_type 0 346 1 280 317 16 36 chr1 167742807 167742843 -74921510 + MIR SINE MIR 125 160 -65 335 370 72 17 chr1 167742858 167743039 -74921314 - L2 LINE L2 -2046 1268 1078 831 187 6 29 chr1 167743067 167743238 -74921115 - FRAM SINE Alu -9 167 1 381 206 0 0 chr1 167743408 167743481 -74920872 + MIR SINE MIR 35 107 -155 2468 267 94 4 chr1 167743482 167744401 -74919952 + L2 LINE L2 539 1539 -1775 333 320 33 26 chr1 167744766 167744919 -74919434 + MIR SINE MIR 109 262 0 2419 77 0 3 chr1 167744963 167745260 -74919093 - AluSg SINE Alu -14 296 1 320 292 77 31 chr1 167745747 167745942 -74918411 - MIR SINE MIR 0 262 59 211 319 32 32 chr1 167746374 167746468 -74917885 - MER5B DNA MER1_type -84 94 1 280 241 21 110 chr1 167747112 167747257 -74917096 + MIR SINE MIR 31 162 -100 549 265 12 24 chr1 167748230 167748396 -74915957 - MIR SINE MIR -71 191 28 224 273 61 0 chr1 167749416 167749482 -74914871 - MIR SINE MIR -110 152 83 277 237 79 0 chr1 167749505 167749581 -74914772 - L2 LINE L2 0 3272 3191 380 306 124 29 chr1 167749902 167750216 -74914137 + L2 LINE L2 2897 3240 -73 233 53 53 0 chr1 167750262 167750300 -74914053 + A-rich Low_complexity Low_complexity 2 41 0 270 313 0 0 chr1 167751434 167751501 -74912852 - L2 LINE L2 -1 3271 3205 2315 119 0 0 chr1 167751505 167751817 -74912536 + AluSx SINE Alu 1 312 0 1554 144 15 8 chr1 167751922 167752185 -74912168 + MLT1C LTR MaLR 5 269 -198 252 285 57 25 chr1 167752216 167752374 -74911979 - L2 LINE L2 -778 2536 2374 671 193 52 0 chr1 167752970 167753105 -74911248 - MER5A DNA MER1_type 0 189 48 240 182 23 0 chr1 167753105 167753149 -74911204 + 5S rRNA rRNA 1 45 -76 261 204 19 0 chr1 167753149 167753203 -74911150 - MER5A DNA MER1_type -129 60 6 359 261 159 7 chr1 167753216 167753354 -74910999 - MER5B DNA MER1_type -19 159 1 212 335 62 43 chr1 167754943 167755104 -74909249 + L3 LINE CR1 1372 1535 -42 334 271 181 29 chr1 167755201 167755478 -74908875 - L3 LINE CR1 -150 1427 1109 462 18 0 0 chr1 167756421 167756476 -74907877 + (CA)n Simple_repeat Simple_repeat 2 56 0 545 277 32 116 chr1 167757186 167757471 -74906882 + MIR SINE MIR 2 262 0 933 182 32 36 chr1 167757532 167757752 -74906601 + MER20 DNA MER1_type 1 219 0 1146 228 0 0 chr1 167757760 167757984 -74906369 - MER58A DNA MER1_type 0 224 1 399 283 70 86 chr1 167758336 167758837 -74905516 - L2 LINE L2 -670 2644 2152 195 100 0 0 chr1 167760241 167760271 -74904082 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 213 353 0 17 chr1 167761017 167761136 -74903217 + GA-rich Low_complexity Low_complexity 2 118 0 2330 88 3 25 chr1 167761701 167762021 -74902332 + AluSp SINE Alu 1 313 0 215 239 90 30 chr1 167762129 167762196 -74902157 + MIR SINE MIR 30 100 -108 373 336 7 15 chr1 167762286 167762423 -74901930 + MIR SINE MIR 18 153 -109 653 238 21 26 chr1 167762452 167762641 -74901712 - MER119 DNA MER1_type -1 582 395 398 295 90 0 chr1 167762639 167762761 -74901592 - MER119 DNA MER1_type -450 133 1 * 1288 203 78 62 chr1 167763402 167763786 -74900567 + MLT1B LTR MaLR 1 390 0 241 324 29 0 chr1 167763839 167763907 -74900446 - L2 LINE L2 -86 3186 3117 284 82 0 41 chr1 167764355 167764404 -74899949 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 210 71 0 0 chr1 167764583 167764611 -74899742 + (TG)n Simple_repeat Simple_repeat 1 28 0 1817 126 71 0 chr1 167764945 167765214 -74899139 - AluSx SINE Alu -20 292 5 659 192 33 26 chr1 167765286 167765437 -74898916 + MIR SINE MIR 111 262 0 299 316 0 20 chr1 167765420 167765518 -74898835 + L2 LINE L2 3177 3272 0 * 354 308 56 114 chr1 167765717 167766463 -74897890 - L2 LINE L2 -4 3268 2564 261 0 0 0 chr1 167766837 167766866 -74897487 + (TC)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr1 167766865 167766887 -74897466 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 252 100 0 0 chr1 167766887 167766927 -74897426 + (GA)n Simple_repeat Simple_repeat 1 40 0 729 255 69 23 chr1 167767750 167767966 -74896387 - MIR SINE MIR -35 227 2 220 353 43 51 chr1 167768355 167768590 -74895763 - L2 LINE L2 -173 3099 2867 506 266 208 19 chr1 167768680 167768887 -74895466 + MIR SINE MIR 17 262 0 195 305 0 0 chr1 167768890 167768949 -74895404 + MIR SINE MIR 185 243 -19 727 238 112 14 chr1 167769403 167769626 -74894727 + MIR SINE MIR 18 262 0 1426 261 88 125 chr1 167770012 167770214 -74894139 + L3 LINE CR1 466 674 -903 2044 123 70 22 chr1 167770214 167770571 -74893782 + THE1C LTR MaLR 1 374 -1 1426 261 88 125 chr1 167770571 167771503 -74892850 + L3 LINE CR1 674 1558 -19 376 318 25 30 chr1 167771736 167771934 -74892419 - L2 LINE L2 -6 3307 3111 500 308 57 32 chr1 167771969 167772216 -74892137 - MIR SINE MIR -8 254 2 408 20 0 0 chr1 167772944 167772993 -74891360 + (CA)n Simple_repeat Simple_repeat 2 50 0 8737 173 27 28 chr1 167773429 167774104 -74890249 + L1P5 LINE L1 3371 4045 -2109 2272 121 0 3 chr1 167774104 167774417 -74889936 + AluSq SINE Alu 1 312 -1 8737 173 27 28 chr1 167774417 167775061 -74889292 + L1P5 LINE L1 4045 4688 -1466 180 0 0 0 chr1 167775061 167775081 -74889272 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8737 173 27 28 chr1 167775081 167776213 -74888140 + L1P5 LINE L1 4688 5808 -346 1186 89 5 84 chr1 167776294 167776484 -74887869 - AluSq SINE Alu -138 175 1 343 215 0 0 chr1 167777619 167777684 -74886669 + MIR SINE MIR 77 141 -67 2181 97 10 3 chr1 167777687 167777977 -74886376 + AluSp SINE Alu 2 293 -20 355 314 8 17 chr1 167778115 167778233 -74886120 + MER5B DNA MER1_type 6 122 -56 419 296 62 73 chr1 167778377 167778556 -74885797 - MER91A DNA MER1_type -6 190 14 781 135 22 22 chr1 167778954 167779132 -74885221 + GA-rich Low_complexity Low_complexity 3 180 0 574 206 10 0 chr1 167779134 167779236 -74885117 + polypurine Low_complexity Low_complexity 3 105 0 203 244 0 0 chr1 167779296 167779337 -74885016 + GA-rich Low_complexity Low_complexity 1 41 0 202 364 52 35 chr1 167781608 167781781 -74882572 + L2 LINE L2 2797 2972 -342 203 307 139 20 chr1 167781959 167782060 -74882293 + L2 LINE L2 3151 3263 -9 642 165 35 0 chr1 167782133 167782303 -74882050 + (CA)n Simple_repeat Simple_repeat 1 176 0 252 350 51 46 chr1 167783945 167784162 -74880191 - L3 LINE CR1 -310 1267 1050 954 183 0 12 chr1 167784475 167784639 -74879714 + FRAM SINE Alu 1 162 -4 653 130 43 0 chr1 167784646 167784761 -74879592 + L1MB4 LINE L1 6059 6178 -2 195 340 104 38 chr1 167785736 167785842 -74878511 + L2 LINE L2 3201 3313 0 * 282 333 109 22 chr1 167785837 167786020 -74878333 - MIR SINE MIR -62 200 2 243 103 0 0 chr1 167788912 167788951 -74875402 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 634 291 136 0 chr1 167789680 167789886 -74874467 + MIR SINE MIR 11 244 -18 1810 177 0 10 chr1 167790452 167790763 -74873590 - AluJb SINE Alu -4 308 1 1888 192 67 78 chr1 167790785 167791296 -74873057 - MLT1D LTR MaLR 0 505 1 213 65 0 0 chr1 167791421 167791452 -74872901 + (TG)n Simple_repeat Simple_repeat 2 32 0 194 232 38 20 chr1 167792127 167792183 -74872170 + MIR SINE MIR 63 118 -90 1430 241 85 12 chr1 167793171 167793677 -74870676 + L1ME4a LINE L1 5575 6117 -4 250 243 0 0 chr1 167795990 167796060 -74868293 + T-rich Low_complexity Low_complexity 1 70 0 233 191 73 146 chr1 167796233 167796343 -74868010 - MIR SINE MIR -37 225 124 224 347 32 16 chr1 167796923 167797047 -74867306 + L2 LINE L2 2371 2496 -818 1761 97 8 0 chr1 167797081 167797329 -74867024 - L1M1 LINE L1 -646 5659 5410 290 357 43 43 chr1 167797556 167797814 -74866539 + L2 LINE L2 2812 3069 -203 187 382 0 27 chr1 167798155 167798265 -74866088 + L2 LINE L2 2876 2982 -290 483 18 0 0 chr1 167798289 167798345 -74866008 + (TG)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr1 167798450 167798472 -74865881 + AT_rich Low_complexity Low_complexity 1 22 0 250 352 105 0 chr1 167798581 167798686 -74865667 - L2 LINE L2 -8 3264 3149 331 266 89 47 chr1 167799339 167799508 -74864845 - MIR SINE MIR -60 202 27 1057 292 43 56 chr1 167800694 167801300 -74863053 - L1ME4a LINE L1 -2 6119 5522 230 267 33 22 chr1 167801800 167801890 -74862463 + Charlie8 DNA MER1_type 4 94 -2323 321 26 0 0 chr1 167803699 167803737 -74860616 + (TG)n Simple_repeat Simple_repeat 1 38 0 312 323 31 8 chr1 167803924 167804051 -74860302 + MIR SINE MIR 112 241 -21 360 0 0 0 chr1 167804820 167804860 -74859493 + (CA)n Simple_repeat Simple_repeat 2 41 0 265 381 19 12 chr1 167805330 167805490 -74858863 + L3b LINE CR1 1338 1498 -85 503 261 46 8 chr1 167805706 167805836 -74858517 - MIR SINE MIR -116 146 12 264 220 186 51 chr1 167806248 167806366 -74857987 - MIR3 SINE MIR -32 176 43 1601 68 5 24 chr1 167806608 167806814 -74857539 - AluSp SINE Alu 0 313 112 672 326 25 8 chr1 167807337 167807576 -74856777 - MIR SINE MIR -3 259 17 491 284 58 77 chr1 167807587 167807950 -74856403 - L2 LINE L2 -739 2575 2220 2513 76 0 0 chr1 167810848 167811151 -74853202 - AluSg SINE Alu -7 303 1 422 250 101 20 chr1 167812643 167812791 -74851562 + MIR SINE MIR 29 188 -74 282 318 24 16 chr1 167812874 167813000 -74851353 - MIR SINE MIR -24 238 112 221 306 123 35 chr1 167815566 167815736 -74848617 + L2 LINE L2 2325 2509 -805 254 352 44 22 chr1 167816019 167816246 -74848107 + L2 LINE L2 2846 3077 -195 2392 83 3 10 chr1 167816322 167816634 -74847719 - AluSp SINE Alu -3 310 1 234 208 0 0 chr1 167816777 167816830 -74847523 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 2053 127 3 16 chr1 167817088 167817402 -74846951 - AluSx SINE Alu -2 310 1 296 401 15 0 chr1 167817973 167818110 -74846243 + L2 LINE L2 3129 3267 -5 269 307 50 20 chr1 167818283 167818384 -74845969 + MIR SINE MIR 37 140 -68 218 227 0 0 chr1 167818634 167818678 -74845675 + T-rich Low_complexity Low_complexity 1 44 0 660 234 66 51 chr1 167819128 167819385 -74844968 - MIR SINE MIR 0 262 2 288 322 52 9 chr1 167820111 167820226 -74844127 - L2 LINE L2 -15 3257 3138 218 246 101 0 chr1 167820474 167820543 -74843810 - MIR SINE MIR -4 258 183 242 357 71 18 chr1 167820672 167821106 -74843247 - L2 LINE L2 -788 2526 2070 231 261 216 0 chr1 167822359 167822447 -74841906 + L2 LINE L2 3158 3264 -8 1783 92 141 0 chr1 167824652 167824914 -74839439 + AluSg SINE Alu 1 299 -1 220 366 15 30 chr1 167827067 167827198 -74837155 + MIR SINE MIR 20 148 -60 262 304 65 11 chr1 167827244 167827336 -74837017 - MIR SINE MIR -90 172 76 356 225 11 0 chr1 167827467 167827556 -74836797 + Charlie4 DNA MER1_type 1818 1907 -54 367 235 12 12 chr1 167827582 167827667 -74836686 - MIR3 SINE MIR -28 180 96 760 218 58 0 chr1 167831073 167831247 -74833106 - MER5A DNA MER1_type -1 188 5 412 308 82 71 chr1 167832837 167833201 -74831152 + L2 LINE L2 2851 3218 -54 570 268 37 53 chr1 167833227 167833470 -74830883 + MIR SINE MIR 24 262 0 240 287 43 11 chr1 167833540 167833634 -74830719 - MIR SINE MIR -114 148 52 456 272 228 18 chr1 167835083 167835564 -74828789 - L2 LINE L2 0 3313 2716 218 240 0 0 chr1 167835588 167835638 -74828715 + L2 LINE L2 2479 2528 -786 325 234 127 102 chr1 167835692 167835897 -74828456 + L2 LINE L2 3104 3313 0 22 0 0 0 chr1 167835929 167835951 -74828402 + AT_rich Low_complexity Low_complexity 1 22 0 482 278 35 6 chr1 167835971 167836140 -74828213 - MIR SINE MIR -74 188 15 232 359 59 29 chr1 167837117 167837287 -74827066 + MIR SINE MIR 40 214 -48 251 252 96 74 chr1 167838397 167838667 -74825686 + LTR16C LTR ERVL 156 431 -60 309 283 9 53 chr1 167838727 167838840 -74825513 - MIR3 SINE MIR -15 193 86 373 174 28 34 chr1 167838908 167839086 -74825267 + (TA)n Simple_repeat Simple_repeat 1 177 0 378 74 0 0 chr1 167840172 167840226 -74824127 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 259 133 22 56 chr1 167840757 167840847 -74823506 + CT-rich Low_complexity Low_complexity 2 88 0 22 0 0 0 chr1 167841474 167841496 -74822857 + AT_rich Low_complexity Low_complexity 1 22 0 2162 125 79 18 chr1 167842093 167842436 -74821917 + THE1B LTR MaLR 1 364 0 258 32 0 0 chr1 167843419 167843450 -74820903 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 215 329 14 0 chr1 167843476 167843549 -74820804 - L2 LINE L2 -47 3266 3193 717 261 41 25 chr1 167845332 167845577 -74818776 - MIR SINE MIR -10 252 4 1786 259 42 26 chr1 167847831 167848337 -74816016 + MLT1H1 LTR MaLR 1 514 -41 2070 125 13 10 chr1 167848339 167848643 -74815710 - AluSq SINE Alu -8 305 1 314 283 122 11 chr1 167849080 167849260 -74815093 - MIR SINE MIR -25 237 38 529 257 65 96 chr1 167850384 167850810 -74813543 + LTR33A LTR ERVL 1 523 0 549 321 16 16 chr1 167850944 167851134 -74813219 + MER117 DNA MER1_type 1 190 -7 509 184 213 78 chr1 167851486 167851730 -74812623 - LTR50 LTR ERVL 0 795 519 1756 114 40 87 chr1 167851767 167852091 -74812262 - AluSx SINE Alu 0 311 2 568 254 113 0 chr1 167852190 167852375 -74811978 - LTR50 LTR ERVL -584 211 6 357 284 22 15 chr1 167852715 167852849 -74811504 - MIR SINE MIR 0 262 128 31 92 0 0 chr1 167854756 167854843 -74809510 + AT_rich Low_complexity Low_complexity 1 87 0 195 100 0 0 chr1 167855548 167855578 -74808775 + (GA)n Simple_repeat Simple_repeat 1 30 0 277 291 45 37 chr1 167855762 167855896 -74808457 - MIR SINE MIR -49 213 79 603 286 10 20 chr1 167856383 167856579 -74807774 + MER91A DNA MER1_type 1 194 -2 750 244 159 23 chr1 167857261 167857747 -74806606 + L2 LINE L2 2757 3308 -5 217 325 25 25 chr1 167857779 167857899 -74806454 + L3 LINE CR1 1377 1496 -81 434 226 123 0 chr1 167857999 167858105 -74806248 + MIR SINE MIR 3 121 -141 815 212 48 26 chr1 167858465 167858654 -74805699 - MER3 DNA MER1_type -15 194 2 1947 160 0 3 chr1 167859063 167859374 -74804979 - AluSx SINE Alu 0 314 5 312 237 79 0 chr1 167859496 167859572 -74804781 - MIR SINE MIR -133 129 48 279 297 62 20 chr1 167861207 167861356 -74802997 + MIR3 SINE MIR 1 149 -60 272 320 10 10 chr1 167861450 167861547 -74802806 + L2 LINE L2 2231 2327 -987 248 329 31 18 chr1 167861898 167862010 -74802343 + MIR SINE MIR 75 192 -63 183 329 7 62 chr1 167862057 167862203 -74802150 + L2 LINE L2 2872 3009 -263 24 32 0 0 chr1 167863228 167863259 -74801094 + AT_rich Low_complexity Low_complexity 1 31 0 43 47 0 0 chr1 167865117 167865181 -74799172 + AT_rich Low_complexity Low_complexity 1 64 0 391 317 77 0 chr1 167865883 167866073 -74798280 + MIR SINE MIR 27 232 -30 223 257 96 66 chr1 167866170 167866306 -74798047 - MIR SINE MIR -103 159 20 246 204 19 0 chr1 167867056 167867110 -74797243 + MIR SINE MIR 183 237 -25 199 161 210 0 chr1 167868372 167868434 -74795919 - MIR SINE MIR -122 140 66 189 0 0 0 chr1 167870646 167870667 -74793686 + (T)n Simple_repeat Simple_repeat 1 21 0 279 276 133 0 chr1 167871194 167871292 -74793061 - L2 LINE L2 0 3272 3162 208 139 0 0 chr1 167871307 167871343 -74793010 + (T)n Simple_repeat Simple_repeat 1 36 0 550 148 24 97 chr1 167872297 167872329 -74792024 + L1M2 LINE L1 5456 5489 -682 2161 100 7 0 chr1 167872329 167872632 -74791721 + AluSp SINE Alu 2 306 0 550 148 24 97 chr1 167872632 167872786 -74791567 + L1M2 LINE L1 5489 5693 -478 527 325 46 20 chr1 167872786 167872983 -74791370 - MIR3 SINE MIR -5 203 2 2150 121 0 3 chr1 167873161 167873458 -74790895 - AluSq SINE Alu -17 296 1 310 222 10 40 chr1 167874280 167874379 -74789974 + L1MC4 LINE L1 6614 6709 -1333 668 300 47 11 chr1 167874456 167874733 -74789620 + L1MEd LINE L1 322 608 -5808 639 275 28 60 chr1 167875463 167875493 -74788860 + MIR SINE MIR 5 34 -228 2165 98 21 0 chr1 167875493 167875780 -74788573 + AluSx SINE Alu 1 293 -19 639 275 28 60 chr1 167875780 167876000 -74788353 + MIR SINE MIR 34 247 -15 201 223 0 194 chr1 167877655 167877794 -74786559 + L2 LINE L2 3197 3308 -5 883 161 0 0 chr1 167877931 167878055 -74786298 - FLAM_A SINE Alu -6 127 4 240 250 18 0 chr1 167878857 167878913 -74785440 + CT-rich Low_complexity Low_complexity 3 59 0 2184 105 0 14 chr1 167879102 167879424 -74784929 - AluSg SINE Alu 0 310 1 253 224 45 0 chr1 167879471 167879538 -74784815 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 225 206 0 16 chr1 167879539 167879602 -74784751 + L1MEd LINE L1 1996 2057 -4369 26 30 0 0 chr1 167879632 167879665 -74784688 + AT_rich Low_complexity Low_complexity 1 33 0 210 283 33 0 chr1 167879866 167879926 -74784427 - MIR SINE MIR -77 185 124 498 255 32 51 chr1 167881992 167882149 -74782204 + MIR SINE MIR 19 172 -90 269 298 84 23 chr1 167883345 167883476 -74780877 - MIR SINE MIR -75 187 49 244 358 19 12 chr1 167884656 167884818 -74779535 + L2 LINE L2 2724 2886 -428 182 108 54 0 chr1 167887310 167887347 -74777006 + T-rich Low_complexity Low_complexity 1 39 0 210 37 0 0 chr1 167887988 167888015 -74776338 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr1 167888811 167888831 -74775522 + (CAA)n Simple_repeat Simple_repeat 2 21 0 513 277 47 47 chr1 167889010 167889245 -74775108 - L2 LINE L2 -2 3311 3077 1526 269 47 14 chr1 167889287 167889733 -74774620 - L2 LINE L2 -475 2839 2379 315 330 153 50 chr1 167889988 167890831 -74773522 + L2 LINE L2 1933 2862 -452 602 252 111 88 chr1 167891426 167891732 -74772621 + HAL1 LINE L1 10 322 -2185 288 77 0 0 chr1 167891733 167891772 -74772581 + (TG)n Simple_repeat Simple_repeat 1 39 0 307 244 12 0 chr1 167891782 167891864 -74772489 + HAL1 LINE L1 2244 2326 -181 228 174 0 0 chr1 167891865 167891911 -74772442 - LTR66 LTR ERVL -171 439 394 539 171 0 9 chr1 167891925 167891996 -74772357 + (TA)n Simple_repeat Simple_repeat 1 72 -38 4441 114 2 8 chr1 167891996 167892600 -74771753 + MER4A LTR ERV1 1 600 0 539 171 0 9 chr1 167892600 167892639 -74771714 + (TA)n Simple_repeat Simple_repeat 72 110 0 402 234 58 65 chr1 167892669 167892823 -74771530 + HAL1 LINE L1 2355 2507 0 25 31 0 0 chr1 167892823 167892855 -74771498 + AT_rich Low_complexity Low_complexity 1 32 0 207 186 0 0 chr1 167893010 167893053 -74771300 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 10013 135 10 3 chr1 167893074 167895374 -74768979 + L1PA11 LINE L1 3865 6174 0 22 35 0 0 chr1 167895420 167895449 -74768904 + AT_rich Low_complexity Low_complexity 1 29 0 843 179 26 0 chr1 167897332 167897483 -74766870 - MER5A DNA MER1_type -21 168 14 1810 155 19 19 chr1 167897504 167897814 -74766539 + MER1B DNA MER1_type 29 338 -1 450 0 0 0 chr1 167898144 167898194 -74766159 + (CA)n Simple_repeat Simple_repeat 2 51 0 522 337 72 30 chr1 167898949 167899379 -74764974 - L3b LINE CR1 0 1583 1136 23 33 0 0 chr1 167899568 167899598 -74764755 + AT_rich Low_complexity Low_complexity 1 30 0 288 320 20 48 chr1 167899810 167899957 -74764396 + MER5A DNA MER1_type 2 144 -45 2259 123 0 0 chr1 167900350 167900660 -74763693 + AluSx SINE Alu 1 310 -2 366 303 42 0 chr1 167901444 167901563 -74762790 - MIR SINE MIR -77 185 62 225 206 79 16 chr1 167901821 167901884 -74762469 - L2 LINE L2 -63 3250 3184 1689 175 3 32 chr1 167902131 167902445 -74761908 - AluJo SINE Alu -7 305 1 315 203 0 0 chr1 167903027 167903096 -74761257 + GA-rich Low_complexity Low_complexity 2 70 0 198 296 11 80 chr1 167903337 167903425 -74760928 - L2 LINE L2 -5 3267 3186 1020 177 27 50 chr1 167903636 167903856 -74760497 - MER20 DNA MER1_type -4 215 1 306 259 10 139 chr1 167903968 167904169 -74760184 - MIR SINE MIR -3 259 85 256 341 138 20 chr1 167904263 167904559 -74759794 - L2 LINE L2 -431 2883 2553 186 43 0 0 chr1 167904682 167904705 -74759648 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 737 196 42 18 chr1 167905964 167906132 -74758221 - MER5A DNA MER1_type 0 189 18 285 29 0 0 chr1 167907021 167907055 -74757298 + (TG)n Simple_repeat Simple_repeat 2 35 0 379 217 141 101 chr1 167907318 167907516 -74756837 - MER102b DNA MER1_type -1 340 135 22 0 0 0 chr1 167907526 167907548 -74756805 + AT_rich Low_complexity Low_complexity 1 22 0 322 241 38 21 chr1 167907589 167907697 -74756656 - Charlie8 DNA MER1_type -2284 133 7 23 0 0 0 chr1 167909564 167909587 -74754766 + AT_rich Low_complexity Low_complexity 1 23 0 416 221 197 0 chr1 167909854 167909976 -74754377 - L1MC/D LINE L1 -2039 5769 5624 28 0 0 0 chr1 167910471 167910499 -74753854 + AT_rich Low_complexity Low_complexity 1 28 0 1544 179 32 21 chr1 167910499 167910784 -74753569 - AluJo SINE Alu -24 288 1 832 172 10 26 chr1 167911230 167911529 -74752824 + GA-rich Low_complexity Low_complexity 1 294 0 261 83 0 0 chr1 167911523 167911571 -74752782 + (GAAAA)n Simple_repeat Simple_repeat 1 48 0 * 215 211 0 0 chr1 167913579 167913617 -74750736 + (CA)n Simple_repeat Simple_repeat 2 39 0 344 309 79 0 chr1 167913744 167913870 -74750483 - MIR SINE MIR -28 234 99 313 59 0 0 chr1 167914082 167914127 -74750226 - AluY SINE Alu -11 291 252 1281 81 6 0 chr1 167914127 167914287 -74750066 - AluY SINE Alu -105 206 46 191 259 165 12 chr1 167915306 167915391 -74748962 + MIR3 SINE MIR 110 207 -1 22 0 0 0 chr1 167915402 167915424 -74748929 + AT_rich Low_complexity Low_complexity 1 22 0 929 20 0 0 chr1 167915425 167915526 -74748827 - L1PA2 LINE L1 -4 6151 6051 2045 118 40 7 chr1 167916304 167916600 -74747753 + AluSx SINE Alu 1 306 -6 252 0 0 0 chr1 167916944 167916972 -74747381 + (A)n Simple_repeat Simple_repeat 1 28 0 3685 56 11 9 chr1 167918583 167919032 -74745321 - L1PA4 LINE L1 -3 6152 5703 355 329 43 43 chr1 167919828 167919968 -74744385 + L2 LINE L2 3129 3268 -4 2462 87 3 0 chr1 167920058 167920367 -74743986 - AluSp SINE Alu -3 310 1 34 55 0 0 chr1 167920463 167920518 -74743835 + AT_rich Low_complexity Low_complexity 1 55 0 1831 155 17 3 chr1 167920610 167920901 -74743452 + AluJb SINE Alu 1 295 -17 1838 126 19 0 chr1 167921053 167921314 -74743039 - L1PA15 LINE L1 0 6165 5900 187 325 120 8 chr1 167921318 167921435 -74742918 - MIR SINE MIR -86 176 47 845 210 15 82 chr1 167921601 167921868 -74742485 - L1ME3 LINE L1 0 6162 5914 1318 198 78 58 chr1 167923068 167923260 -74741093 + MLT1A1 LTR MaLR 15 219 -146 2328 100 0 3 chr1 167923260 167923560 -74740793 + AluSg SINE Alu 1 299 -11 1318 198 78 58 chr1 167923560 167923711 -74740642 + MLT1A1 LTR MaLR 219 365 0 309 352 117 0 chr1 167924172 167924317 -74740036 + MER5A DNA MER1_type 27 188 -1 195 286 114 0 chr1 167924904 167925009 -74739344 - MIR SINE MIR 0 262 146 559 339 115 43 chr1 167925010 167925904 -74738449 + L2 LINE L2 2354 3313 0 294 333 49 0 chr1 167925910 167925991 -74738362 - MIR SINE MIR -64 144 60 481 274 170 0 chr1 167926298 167926451 -74737902 + MER5A DNA MER1_type 11 189 0 297 0 0 0 chr1 167926747 167926780 -74737573 + (A)n Simple_repeat Simple_repeat 1 33 0 257 314 0 12 chr1 167927374 167927460 -74736893 - L2 LINE L2 0 3313 3229 188 311 40 0 chr1 167927545 167927619 -74736734 - L2 LINE L2 -270 3002 2926 493 362 43 4 chr1 167928314 167928549 -74735804 + MIR SINE MIR 4 247 -15 198 0 0 0 chr1 167928604 167928626 -74735727 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 396 0 0 0 chr1 167928625 167928669 -74735684 + (TG)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr1 167930042 167930063 -74734290 + AT_rich Low_complexity Low_complexity 1 21 0 231 103 0 0 chr1 167930180 167930219 -74734134 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 318 106 0 0 chr1 167930377 167930424 -74733929 + (ATG)n Simple_repeat Simple_repeat 2 48 0 587 290 54 27 chr1 167930451 167930672 -74733681 - MIR SINE MIR -24 238 12 269 280 40 13 chr1 167931125 167931200 -74733153 - MIR3 SINE MIR -40 168 92 586 261 43 0 chr1 167931214 167931352 -74733001 + MIR SINE MIR 15 158 -104 194 180 16 0 chr1 167931358 167931419 -74732934 + (TTATA)n Simple_repeat Simple_repeat 2 63 0 1104 180 0 0 chr1 167932478 167932656 -74731697 - MER5B DNA MER1_type 0 178 1 636 345 110 53 chr1 167932988 167934194 -74730159 - L2 LINE L2 -22 3250 1978 379 291 28 28 chr1 167934553 167934694 -74729659 - MIR SINE MIR -50 212 72 207 0 0 0 chr1 167934715 167934738 -74729615 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 187 353 0 0 chr1 167936130 167936181 -74728172 - L2 LINE L2 -15 3257 3207 363 311 33 8 chr1 167936291 167936413 -74727940 - MIR SINE MIR -133 129 5 24 0 0 0 chr1 167936554 167936578 -74727775 + AT_rich Low_complexity Low_complexity 1 24 0 404 262 62 28 chr1 167936601 167936746 -74727607 - MIR SINE MIR -67 195 46 908 196 94 41 chr1 167937609 167937854 -74726499 - MIR SINE MIR 0 262 5 368 306 0 19 chr1 167937919 167938027 -74726326 + MER5A DNA MER1_type 81 186 -3 316 296 82 19 chr1 167938895 167939101 -74725252 + LTR33 LTR ERVL 14 232 -289 615 256 52 12 chr1 167939169 167939341 -74725012 + LTR33 LTR ERVL 341 519 -2 230 236 18 0 chr1 167939506 167939561 -74724792 - L2 LINE L2 -4 3309 3254 250 238 16 16 chr1 167939634 167939697 -74724656 + GA-rich Low_complexity Low_complexity 2 64 0 2253 80 0 30 chr1 167940597 167940897 -74723456 + AluSc SINE Alu 1 291 -18 243 332 65 60 chr1 167941611 167941843 -74722510 - MIR SINE MIR -27 235 3 2464 70 0 0 chr1 167943347 167943649 -74720704 + AluY SINE Alu 1 302 -9 447 358 30 6 chr1 167943693 167943858 -74720495 + MIR SINE MIR 10 178 -84 2562 130 120 2 chr1 167943980 167944389 -74719964 + MSTB2 LTR MaLR 1 457 0 275 282 182 0 chr1 167944836 167944946 -74719407 - L2 LINE L2 -3 3269 3140 217 295 147 27 chr1 167946385 167946535 -74717818 - MIR SINE MIR -67 141 19 525 296 18 12 chr1 167948367 167948536 -74715817 + MIR3 SINE MIR 21 190 -18 7485 51 11 1 chr1 167949560 167950702 -74713651 + L1PA6 LINE L1 4993 6143 -11 2340 162 13 80 chr1 167950976 167951169 -74713184 + Tigger2a DNA MER2_type 2 206 -2502 2032 108 25 0 chr1 167951169 167951447 -74712906 + AluSq SINE Alu 1 285 -28 2340 162 13 80 chr1 167951447 167951716 -74712637 + Tigger2a DNA MER2_type 206 433 -1 234 0 0 0 chr1 167953843 167953869 -74710484 + (A)n Simple_repeat Simple_repeat 1 26 0 1167 8 0 0 chr1 167955068 167955198 -74709155 - L1HS LINE L1 0 6155 6026 208 125 0 50 chr1 168005737 168005777 -74658576 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 199 291 63 13 chr1 168005998 168006077 -74658276 + L2 LINE L2 1551 1633 -1681 2144 108 7 3 chr1 168006096 168006382 -74657971 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr1 168006391 168006415 -74657938 + AT_rich Low_complexity Low_complexity 1 24 0 409 242 6 28 chr1 168006576 168006758 -74657595 + (TA)n Simple_repeat Simple_repeat 1 178 0 364 328 119 11 chr1 168006851 168007028 -74657325 - HAL1 LINE L1 -1801 706 511 2154 164 17 0 chr1 168007147 168007506 -74656847 + MLT1A1 LTR MaLR 1 365 0 504 231 141 69 chr1 168007539 168007872 -74656481 + MLT1H LTR MaLR 53 409 -140 335 249 21 143 chr1 168008049 168008238 -74656115 - HAL1 LINE L1 -2320 187 22 623 286 71 45 chr1 168010478 168010747 -74653606 + L2 LINE L2 2130 2405 -909 321 368 0 0 chr1 168010789 168010895 -74653458 + L2 LINE L2 2631 2736 -578 408 357 9 0 chr1 168011111 168011223 -74653130 + L2 LINE L2 3155 3267 -5 513 310 57 19 chr1 168012596 168012754 -74651599 - MER91A DNA MER1_type -32 164 1 207 125 0 0 chr1 168013370 168013410 -74650943 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 267 278 102 28 chr1 168013519 168013627 -74650726 + L2 LINE L2 3191 3306 -7 237 65 0 0 chr1 168013948 168013979 -74650374 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 501 259 47 31 chr1 168014151 168014344 -74650009 - MLT1H LTR MaLR -10 539 344 1554 225 113 31 chr1 168014790 168015102 -74649251 - LTR40a LTR ERVL -4 515 149 2113 126 0 0 chr1 168015102 168015403 -74648950 + AluY SINE Alu 2 302 -9 1554 225 113 31 chr1 168015403 168015566 -74648787 - LTR40a LTR ERVL -370 149 1 206 263 53 35 chr1 168015757 168015814 -74648539 + MIR SINE MIR 91 148 -60 228 289 178 0 chr1 168015836 168015926 -74648427 + LTR16A1 LTR ERVL 27 132 -325 611 188 206 0 chr1 168015979 168016144 -74648209 + LTR16A1 LTR ERVL 257 455 -2 204 179 0 0 chr1 168016488 168016527 -74647826 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 261 75 0 0 chr1 168016528 168016568 -74647785 + (GA)n Simple_repeat Simple_repeat 1 40 0 261 57 0 0 chr1 168018548 168018583 -74645770 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 448 289 31 55 chr1 168018613 168018955 -74645398 + L2 LINE L2 2301 2714 -600 277 339 115 26 chr1 168020183 168020375 -74643978 + L3b LINE CR1 1366 1574 -9 243 0 0 0 chr1 168020440 168020467 -74643886 + (CA)n Simple_repeat Simple_repeat 2 28 0 297 317 8 0 chr1 168021683 168021806 -74642547 + L1MC4a LINE L1 5788 5911 -1897 197 302 173 14 chr1 168023976 168024115 -74640238 - MIR3 SINE MIR -15 193 33 207 297 68 51 chr1 168024278 168024396 -74639957 - MIR SINE MIR -62 200 81 340 230 212 18 chr1 168026250 168026363 -74637990 + MIR SINE MIR 118 252 -10 243 270 0 32 chr1 168027070 168027133 -74637220 - L2 LINE L2 -3 3269 3209 212 361 131 11 chr1 168027886 168028069 -74636284 + MIR SINE MIR 13 217 -45 383 290 107 15 chr1 168028264 168028395 -74635958 - MIR SINE MIR -88 174 32 1987 127 33 16 chr1 168028942 168029249 -74635104 - AluSx SINE Alu 0 312 1 325 280 112 0 chr1 168029302 168029409 -74634944 + L2 LINE L2 3187 3305 -8 497 292 87 0 chr1 168029510 168029671 -74634682 - MIR SINE MIR -11 251 77 799 289 32 20 chr1 168029807 168030060 -74634293 - MIR SINE MIR 0 262 7 204 40 0 0 chr1 168030343 168030368 -74633985 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 296 326 11 21 chr1 168031474 168031569 -74632784 + MIR3 SINE MIR 63 156 -52 379 109 0 16 chr1 168031830 168031894 -74632459 - MADE1 DNA Mariner -17 63 1 22 0 0 0 chr1 168032011 168032033 -74632320 + AT_rich Low_complexity Low_complexity 1 22 0 476 259 142 28 chr1 168032782 168032994 -74631359 - L2 LINE L2 0 3313 3078 364 309 61 44 chr1 168033299 168033480 -74630873 + MIR SINE MIR 28 211 -51 396 198 12 117 chr1 168034471 168034633 -74629720 - MER104 DNA Tc2 -35 145 1 374 299 30 8 chr1 168035075 168035209 -74629144 - L3b LINE CR1 -318 1265 1129 189 281 188 0 chr1 168035302 168035398 -74628955 + L2 LINE L2 3200 3313 0 240 222 0 0 chr1 168036379 168036433 -74627920 + (TA)n Simple_repeat Simple_repeat 1 54 0 256 289 0 0 chr1 168036832 168036908 -74627445 + (TG)n Simple_repeat Simple_repeat 1 76 0 227 360 9 18 chr1 168037561 168037672 -74626681 - MIR SINE MIR -108 154 45 293 323 0 16 chr1 168037772 168037899 -74626454 + MIR SINE MIR 110 234 -28 346 280 35 14 chr1 168038445 168038588 -74625765 - MLT1H LTR MaLR -5 544 399 470 183 19 19 chr1 168038954 168039058 -74625295 - MLT1H LTR MaLR -438 111 8 671 312 99 53 chr1 168039835 168040504 -74623849 + L2 LINE L2 2563 3272 0 211 286 42 59 chr1 168040860 168040979 -74623374 - MIR SINE MIR -74 188 72 2644 26 0 6 chr1 168041013 168041326 -74623027 - AluY SINE Alu 0 311 1 389 238 0 0 chr1 168042250 168042330 -74622023 - LTR16A LTR ERVL 0 450 371 293 200 0 0 chr1 168042330 168042390 -74621963 + L1M4 LINE L1 5584 5643 -541 642 301 32 29 chr1 168042416 168042695 -74621658 - LTR16A LTR ERVL -99 351 72 289 208 0 4 chr1 168042878 168042988 -74621365 + MER96 DNA MER1_type? 1 151 -24 272 225 42 0 chr1 168043002 168043073 -74621280 - L1MB7 LINE L1 -11 6173 6100 1700 195 61 10 chr1 168043091 168043763 -74620590 - L1MB7 LINE L1 -493 5685 4976 * 3366 243 37 24 chr1 168043755 168044212 -74620141 - L1MB7 LINE L1 -2481 3665 3216 5670 119 7 0 chr1 168044212 168046000 -74618353 - L1PA15 LINE L1 -1 6164 4357 3366 243 37 24 chr1 168046000 168046759 -74617594 - L1MB7 LINE L1 -2930 3216 2433 487 211 147 0 chr1 168046813 168046922 -74617431 + MER96 DNA MER1_type? 49 173 -2 3384 324 54 20 chr1 168047637 168050951 -74613402 - HERV16 LTR ERVL -1242 4412 913 2374 134 6 16 chr1 168050951 168051317 -74613036 + THE1B LTR MaLR 3 364 0 3384 324 54 20 chr1 168051317 168051941 -74612412 - HERV16 LTR ERVL -4741 913 311 924 224 14 31 chr1 168051950 168052173 -74612180 - MER58A DNA MER1_type 0 224 6 985 256 67 24 chr1 168052179 168052476 -74611877 - HERV16 LTR ERVL -4686 310 1 622 286 91 7 chr1 168052477 168052848 -74611505 - LTR16A LTR ERVL -8 442 1 249 281 0 0 chr1 168053732 168053828 -74610525 + GA-rich Low_complexity Low_complexity 3 98 0 1678 155 24 53 chr1 168053951 168054326 -74610027 - THE1B LTR MaLR 0 364 1 187 237 0 0 chr1 168055502 168055540 -74608813 - MIR SINE MIR -13 249 212 586 305 118 5 chr1 168055574 168055761 -74608592 + MIR SINE MIR 55 262 0 396 259 10 12 chr1 168055794 168055902 -74608451 - MIR SINE MIR -65 143 37 389 324 10 0 chr1 168056256 168056358 -74607995 - L2 LINE L2 0 3313 3211 2647 91 0 11 chr1 168056666 168057040 -74607313 - THE1C LTR MaLR 0 375 6 807 258 63 0 chr1 168057302 168057492 -74606861 - MIR SINE MIR -50 212 11 406 331 39 17 chr1 168058962 168059140 -74605213 - MIR SINE MIR -49 213 32 214 370 74 39 chr1 168059488 168059745 -74604608 - L2 LINE L2 -10 3262 2997 2123 125 10 7 chr1 168060055 168060359 -74603994 + AluSx SINE Alu 1 305 -7 827 224 36 0 chr1 168060982 168061174 -74603179 + MER63A DNA MER1_type 7 205 -5 549 222 18 104 chr1 168062622 168062685 -74601668 + MER105 DNA DNA 1 68 -136 602 243 211 0 chr1 168062685 168062870 -74601483 - MER58A DNA MER1_type 0 224 1 549 222 18 104 chr1 168062870 168063027 -74601326 + MER105 DNA DNA 68 202 -2 4750 95 23 0 chr1 168063803 168064487 -74599866 + HERV9 LTR ERV1 4245 4944 -3455 2227 176 133 64 chr1 168064488 168065265 -74599088 + HERV9 LTR ERV1 840 1669 -5227 1195 96 0 0 chr1 168065265 168065421 -74598932 - AluSg/x SINE Alu 0 312 157 3917 103 4 0 chr1 168065443 168065976 -74598377 + HERV9 LTR ERV1 7865 8399 0 6163 76 57 31 chr1 168065976 168066781 -74597572 + LTR12 LTR ERV1 1 826 0 226 211 26 13 chr1 168067008 168067084 -74597269 + MER11A LTR ERVK 202 278 -988 338 194 28 9 chr1 168067122 168067230 -74597123 + (TA)n Simple_repeat Simple_repeat 2 111 0 388 290 171 0 chr1 168069601 168069777 -74594576 - MIR SINE MIR -1 261 56 198 0 0 0 chr1 168069997 168070019 -74594334 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 501 298 0 7 chr1 168070096 168070237 -74594116 + MLT2F LTR ERVL 1 140 -523 897 201 15 49 chr1 168070245 168070449 -74593904 + MLT1E3 LTR MaLR 51 247 -377 334 217 65 22 chr1 168070492 168070584 -74593769 + MLT2F LTR ERVL 194 289 -374 225 65 0 0 chr1 168070610 168070641 -74593712 + (CA)n Simple_repeat Simple_repeat 1 31 0 1913 181 25 53 chr1 168070872 168071270 -74593083 - MLT1B LTR MaLR -2 388 2 473 289 89 0 chr1 168072559 168072694 -74591659 + MIR3 SINE MIR 38 184 -24 211 303 51 16 chr1 168072712 168072893 -74591460 - MIR SINE MIR 0 262 2 400 289 104 25 chr1 168076097 168076298 -74588055 + L3b LINE CR1 1187 1403 -180 339 319 52 9 chr1 168076468 168076584 -74587769 - MER5A DNA MER1_type -5 184 64 366 300 5 0 chr1 168076973 168077073 -74587280 + MIR SINE MIR 45 147 -62 336 309 86 55 chr1 168078217 168078508 -74585845 + L2 LINE L2 2957 3256 -16 219 114 0 0 chr1 168078521 168078556 -74585797 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 2283 108 3 0 chr1 168078589 168078884 -74585469 + AluSp SINE Alu 3 298 -15 548 209 63 89 chr1 168079697 168079759 -74584594 + MER5B DNA MER1_type 1 63 -115 2332 84 0 10 chr1 168079759 168080069 -74584284 + AluY SINE Alu 5 311 0 548 209 63 89 chr1 168080069 168080164 -74584189 + MER5B DNA MER1_type 63 154 -24 181 294 0 73 chr1 168080320 168080388 -74583965 + L2 LINE L2 3204 3266 -6 226 306 32 0 chr1 168080517 168080579 -74583774 + L2 LINE L2 3207 3270 -2 252 315 0 56 chr1 168080732 168080840 -74583513 + GA-rich Low_complexity Low_complexity 3 104 0 1726 197 33 15 chr1 168084048 168084383 -74579970 - MER58B DNA MER1_type 0 341 1 955 208 87 19 chr1 168084996 168085331 -74579022 - MSTD LTR MaLR 0 396 1 258 221 44 29 chr1 168085537 168085605 -74578748 - MIR SINE MIR -102 160 92 225 276 61 41 chr1 168086926 168087024 -74577329 - L2 LINE L2 0 3313 3214 258 308 185 8 chr1 168087202 168087332 -74577021 - L2 LINE L2 -210 3062 2910 418 313 69 19 chr1 168087812 168087972 -74576381 + MIR3 SINE MIR 16 183 -25 1005 216 88 5 chr1 168088075 168088269 -74576084 + MER58C DNA MER1_type 4 213 -2 1267 233 37 14 chr1 168088356 168088797 -74575556 + MLT1H1 LTR MaLR 4 551 -4 262 301 117 0 chr1 168089140 168089243 -74575110 + L2 LINE L2 3153 3267 -5 451 296 166 5 chr1 168089254 168089477 -74574876 - MIR SINE MIR -1 261 3 199 204 68 0 chr1 168089498 168089542 -74574811 - L2 LINE L2 -89 3183 3137 3493 177 41 23 chr1 168089632 168089738 -74574615 - MLT1E3 LTR MaLR 0 624 521 2341 107 0 0 chr1 168089738 168090036 -74574317 + AluSg SINE Alu 3 300 -10 3493 177 41 23 chr1 168090036 168090540 -74573813 - MLT1E3 LTR MaLR -103 521 3 1699 158 57 92 chr1 168091558 168091962 -74572391 - MLT1B LTR MaLR 0 390 1 357 204 29 11 chr1 168092213 168092671 -74571682 + (TG)n Simple_repeat Simple_repeat 1 466 0 556 292 10 38 chr1 168093176 168093385 -74570968 + L2 LINE L2 3111 3313 0 194 350 93 21 chr1 168093366 168093463 -74570890 - L2 LINE L2 0 3313 3210 * 387 0 0 0 chr1 168094675 168094718 -74569635 + (CA)n Simple_repeat Simple_repeat 2 44 0 235 326 0 12 chr1 168095627 168095713 -74568640 - Charlie8 DNA MER1_type -2 2415 2331 342 274 65 16 chr1 168096083 168096207 -74568146 - MIR3 SINE MIR -49 159 30 1224 230 92 49 chr1 168096403 168096851 -74567502 + MLT1C LTR MaLR 1 467 0 192 286 0 0 chr1 168097045 168097087 -74567266 - MIR SINE MIR -171 91 50 191 273 0 22 chr1 168097668 168097786 -74566567 + MIR SINE MIR 104 260 -2 262 128 0 0 chr1 168099209 168099248 -74565105 - MLT2D LTR ERVL 0 414 376 526 199 13 17 chr1 168099257 168099494 -74564859 + GA-rich Low_complexity Low_complexity 1 235 0 2764 170 5 7 chr1 168099502 168099949 -74564404 - MLT2B3 LTR ERVL -55 499 54 30 27 0 0 chr1 168100195 168100232 -74564121 + AT_rich Low_complexity Low_complexity 1 37 0 263 365 47 0 chr1 168101691 168101776 -74562577 + MIR SINE MIR 36 124 -84 467 222 83 42 chr1 168102727 168102871 -74561482 + MIR SINE MIR 96 245 -17 22 0 0 0 chr1 168104392 168104414 -74559939 + AT_rich Low_complexity Low_complexity 1 22 0 358 342 25 15 chr1 168104718 168104914 -74559439 + L3 LINE CR1 1092 1289 -288 730 280 48 36 chr1 168105052 168105152 -74559201 - L2 LINE L2 -9 3304 3207 375 73 0 0 chr1 168105152 168105207 -74559146 + (TG)n Simple_repeat Simple_repeat 1 55 0 730 280 48 36 chr1 168105207 168105539 -74558814 - L2 LINE L2 -106 3207 2593 228 347 74 0 chr1 168105598 168105719 -74558634 + L3 LINE CR1 1447 1576 -1 314 304 27 18 chr1 168105824 168105936 -74558417 + L2 LINE L2 3201 3313 0 347 277 139 22 chr1 168108175 168108312 -74556041 + L2 LINE L2 3161 3313 0 441 270 81 20 chr1 168108458 168108606 -74555747 + MIR SINE MIR 50 206 -56 8697 169 16 10 chr1 168109182 168110790 -74553563 - L1P LINE L1 -1280 4866 3249 6369 100 23 0 chr1 168110797 168112091 -74552262 + L1PA14 LINE L1 4824 6148 -13 257 266 53 53 chr1 168112187 168112281 -74552072 + L2 LINE L2 3171 3264 -8 471 35 0 0 chr1 168113216 168113273 -74551080 + (CA)n Simple_repeat Simple_repeat 1 57 0 233 307 148 74 chr1 168113616 168113899 -74550454 - L2 LINE L2 0 3272 2969 200 326 68 88 chr1 168113930 168114077 -74550276 + L2 LINE L2 3118 3261 -11 2122 115 27 56 chr1 168114872 168115247 -74549106 - THE1B LTR MaLR 0 364 1 11597 92 23 6 chr1 168115250 168116799 -74547554 - THE1B-int LTR MaLR -5 1575 1 1900 154 21 56 chr1 168116799 168117176 -74547177 - THE1B LTR MaLR 0 364 1 3237 68 0 2 chr1 168118277 168118675 -74545678 + MLT2A1 LTR ERVL 3 399 -45 316 70 18 15 chr1 168118711 168118728 -74545625 + MLT2A1 LTR ERVL 399 414 -30 270 0 0 0 chr1 168118728 168118758 -74545595 + (TG)n Simple_repeat Simple_repeat 2 31 0 316 70 18 15 chr1 168118758 168118802 -74545551 + MLT2A1 LTR ERVL 414 444 0 25652 161 16 17 chr1 168119428 168125787 -74538566 - L1PA10 LINE L1 -1 6482 3 2235 102 0 14 chr1 168127353 168127646 -74536707 + AluSx SINE Alu 1 289 -23 610 185 17 59 chr1 168127683 168127802 -74536551 - FLAM_C SINE Alu -18 115 2 2977 119 12 32 chr1 168128002 168128508 -74535845 - L1MA4 LINE L1 -54 6246 5751 453 118 0 0 chr1 168128508 168128582 -74535771 + L1MA3 LINE L1 6230 6305 0 1847 157 11 3 chr1 168128670 168128980 -74535373 - AluSq SINE Alu 0 313 1 271 292 14 0 chr1 168129741 168129813 -74534540 + (TATG)n Simple_repeat Simple_repeat 3 75 0 335 216 206 30 chr1 168129882 168129933 -74534420 - L1ME4a LINE L1 -253 5868 5827 3922 169 23 46 chr1 168129933 168130714 -74533639 - L1MB5 LINE L1 0 6174 5412 335 216 206 30 chr1 168130714 168130861 -74533492 - L1ME4a LINE L1 -294 5827 5635 192 345 36 0 chr1 168130893 168130948 -74533405 - MIR SINE MIR -130 78 22 264 211 53 0 chr1 168131722 168131779 -74532574 - L2 LINE L2 0 3313 3254 189 0 0 0 chr1 168131780 168131801 -74532552 + (A)n Simple_repeat Simple_repeat 1 21 0 408 269 138 38 chr1 168132232 168132392 -74531961 - MER5B DNA MER1_type -2 176 1 486 263 109 6 chr1 168133264 168133439 -74530914 - MIR SINE MIR -49 213 21 286 311 44 37 chr1 168134925 168135060 -74529293 - L2 LINE L2 -10 3303 3168 552 321 118 25 chr1 168135428 168135836 -74528517 - L2 LINE L2 -626 2688 2243 611 256 46 99 chr1 168136153 168136415 -74527938 + L3 LINE CR1 1121 1368 -209 * 1470 297 110 44 chr1 168136398 168137641 -74526712 - L2 LINE L2 -1 3312 1985 197 319 35 53 chr1 168138301 168138414 -74525939 + L3 LINE CR1 1457 1567 -10 601 37 104 0 chr1 168139602 168139765 -74524588 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 0 0 0 chr1 168139765 168139791 -74524562 + AT_rich Low_complexity Low_complexity 1 26 0 841 0 63 34 chr1 168139791 168139966 -74524387 + (TA)n Simple_repeat Simple_repeat 1 180 0 2368 102 0 0 chr1 168140870 168141174 -74523179 - AluSg SINE Alu -6 304 1 43600 34 21 1 chr1 168141441 168147465 -74516888 - L1PA3 LINE L1 0 6155 6 1638 310 70 62 chr1 168147477 168148627 -74515726 + L2 LINE L2 1553 2711 -603 208 231 48 19 chr1 168148669 168148773 -74515580 + (TA)n Simple_repeat Simple_repeat 1 107 0 718 272 192 11 chr1 168148818 168149167 -74515186 + L2 LINE L2 2853 3264 -49 195 42 0 0 chr1 168149250 168149274 -74515079 + (T)n Simple_repeat Simple_repeat 1 24 0 4669 8 0 0 chr1 168149281 168149774 -74514579 - L1PA2 LINE L1 0 6155 5663 5419 58 0 12 chr1 168149845 168150497 -74513856 + L1PA8 LINE L1 5526 6169 -3 2024 279 60 18 chr1 168151075 168151762 -74512591 - L2 LINE L2 -982 2332 1617 258 368 78 25 chr1 168152799 168153003 -74511350 + L2 LINE L2 2832 3046 -226 483 245 145 46 chr1 168153294 168153535 -74510818 + MLT1L LTR MaLR 351 615 0 194 324 95 14 chr1 168153616 168153690 -74510663 + L2 LINE L2 3203 3282 -31 402 298 111 18 chr1 168153972 168154143 -74510210 + MIR SINE MIR 40 226 -36 331 287 87 9 chr1 168154505 168154620 -74509733 - MIR SINE MIR -108 154 31 256 194 97 86 chr1 168205026 168205119 -74459234 + AluJ/FLAM SINE Alu 1 76 -226 * 1419 124 66 12 chr1 168205118 168205376 -74458977 + MER66B LTR ERV1 215 486 0 348 206 20 29 chr1 168205376 168205449 -74458904 - MLT1C LTR MaLR -219 248 177 2275 77 7 3 chr1 168205454 168205741 -74458612 - AluSp SINE Alu -21 292 5 729 134 118 0 chr1 168205756 168205875 -74458478 - FLAM_C SINE Alu 0 133 1 918 168 117 0 chr1 168205875 168206072 -74458281 + MER58B DNA MER1_type 81 300 -41 811 181 0 0 chr1 168206087 168206220 -74458133 + FLAM_A SINE Alu 1 133 0 513 278 127 15 chr1 168206395 168206600 -74457753 + L1MEd LINE L1 441 668 -5451 228 135 0 0 chr1 168206631 168206668 -74457685 + (A)n Simple_repeat Simple_repeat 1 37 0 735 226 45 64 chr1 168206681 168207164 -74457189 + L1MEd LINE L1 689 1162 -4957 1680 141 15 78 chr1 168207164 168207497 -74456856 + AluJo SINE Alu 1 312 0 642 301 32 29 chr1 168207683 168207962 -74456391 - LTR16A LTR ERVL -99 351 72 289 208 0 4 chr1 168208145 168208255 -74456098 + MER96 DNA MER1_type? 1 151 -24 272 225 42 0 chr1 168208269 168208340 -74456013 - L1MB7 LINE L1 -11 6173 6100 1700 195 61 10 chr1 168208358 168209030 -74455323 - L1MB7 LINE L1 -493 5685 4976 * 3366 243 37 24 chr1 168209022 168209479 -74454874 - L1MB7 LINE L1 -2481 3665 3216 5670 119 7 0 chr1 168209479 168211267 -74453086 - L1PA15 LINE L1 -1 6164 4357 3366 243 37 24 chr1 168211267 168212026 -74452327 - L1MB7 LINE L1 -2930 3216 2433 487 211 147 0 chr1 168212080 168212189 -74452164 + MER96 DNA MER1_type? 49 173 -2 3384 324 54 20 chr1 168212904 168216218 -74448135 - HERV16 LTR ERVL -1242 4412 913 2374 134 6 16 chr1 168216218 168216584 -74447769 + THE1B LTR MaLR 3 364 0 3384 324 54 20 chr1 168216584 168217208 -74447145 - HERV16 LTR ERVL -4741 913 311 924 224 14 31 chr1 168217217 168217440 -74446913 - MER58A DNA MER1_type 0 224 6 985 256 67 24 chr1 168217446 168217743 -74446610 - HERV16 LTR ERVL -4686 310 1 582 287 94 7 chr1 168217744 168218114 -74446239 - LTR16A LTR ERVL -8 442 1 249 281 0 0 chr1 168218998 168219094 -74445259 + GA-rich Low_complexity Low_complexity 3 98 0 1678 155 24 53 chr1 168219217 168219592 -74444761 - THE1B LTR MaLR 0 364 1 187 256 0 0 chr1 168220767 168220806 -74443547 - L2 LINE L2 -18 3295 3257 586 305 118 5 chr1 168220840 168221027 -74443326 + MIR SINE MIR 55 262 0 396 259 10 12 chr1 168221060 168221168 -74443185 - MIR SINE MIR -65 143 37 389 324 10 0 chr1 168221522 168221624 -74442729 - L2 LINE L2 0 3313 3211 2612 96 0 11 chr1 168221932 168222306 -74442047 - THE1C LTR MaLR 0 375 6 807 258 63 0 chr1 168222568 168222758 -74441595 - MIR SINE MIR -50 212 11 406 331 39 17 chr1 168224228 168224406 -74439947 - MIR SINE MIR -49 213 32 214 370 74 39 chr1 168224754 168225011 -74439342 - L2 LINE L2 -10 3262 2997 2123 125 10 7 chr1 168225321 168225625 -74438728 + AluSx SINE Alu 1 305 -7 827 224 36 0 chr1 168226248 168226440 -74437913 + MER63A DNA MER1_type 7 205 -5 549 222 18 104 chr1 168227888 168227951 -74436402 + MER105 DNA DNA 1 68 -136 602 243 211 0 chr1 168227951 168228136 -74436217 - MER58A DNA MER1_type 0 224 1 549 222 18 104 chr1 168228136 168228293 -74436060 + MER105 DNA DNA 68 202 -2 368 241 28 19 chr1 168229587 168229695 -74434658 + MER117 DNA MER1_type 4 112 -85 206 317 156 16 chr1 168229783 168229969 -74434384 + MIR SINE MIR 20 231 -31 274 371 69 49 chr1 168231489 168231839 -74432514 - L2 LINE L2 -50 3222 2866 272 241 17 0 chr1 168232042 168232100 -74432253 - L2 LINE L2 -5 3308 3250 460 327 148 5 chr1 168232131 168232354 -74431999 + MIR SINE MIR 7 261 -1 450 169 0 0 chr1 168234480 168234569 -74429784 + CT-rich Low_complexity Low_complexity 2 90 0 213 220 220 28 chr1 168237273 168237382 -74426971 - L2 LINE L2 -26 3287 3158 432 295 45 0 chr1 168238840 168238952 -74425401 - L2 LINE L2 0 3313 3197 1784 175 16 22 chr1 168239374 168239688 -74424665 + AluJo SINE Alu 1 312 0 2286 110 0 0 chr1 168240478 168240779 -74423574 + AluSq SINE Alu 1 301 -12 229 337 98 41 chr1 168240959 168241077 -74423276 + L2 LINE L2 1809 1919 -1395 1183 140 25 34 chr1 168241077 168241312 -74423041 - L1MA5A LINE L1 -5 6292 6060 229 337 98 41 chr1 168241312 168241459 -74422894 + L2 LINE L2 1919 2056 -1258 1874 169 0 3 chr1 168241459 168241760 -74422593 - AluSx SINE Alu -7 305 6 229 337 98 41 chr1 168241760 168241861 -74422492 + L2 LINE L2 2056 2197 -1117 303 350 107 47 chr1 168244730 168245269 -74419084 - L2 LINE L2 -4 3268 2712 368 213 0 0 chr1 168245452 168245527 -74418826 - MER116 DNA Mariner -5 75 1 333 47 0 0 chr1 168246155 168246198 -74418155 + (CA)n Simple_repeat Simple_repeat 1 43 0 198 103 0 0 chr1 168246427 168246456 -74417897 + (CA)n Simple_repeat Simple_repeat 2 30 0 614 233 291 11 chr1 168247075 168247461 -74416892 + MLT1H LTR MaLR 12 547 -2 213 39 0 0 chr1 168247607 168247633 -74416720 + (TA)n Simple_repeat Simple_repeat 2 27 0 7398 41 2 4 chr1 168247633 168249031 -74415322 - L1PA5 LINE L1 -7 6147 4703 26 50 0 0 chr1 168249227 168249267 -74415086 + AT_rich Low_complexity Low_complexity 1 40 0 1020 283 116 48 chr1 168249593 168250248 -74414105 + L1ME LINE L1 3808 4417 -1729 252 0 0 0 chr1 168250248 168250276 -74414077 + (CA)n Simple_repeat Simple_repeat 2 29 0 1020 283 116 48 chr1 168250276 168250996 -74413357 + L1ME LINE L1 4417 5276 -870 396 320 153 28 chr1 168251009 168251368 -74412985 + L1ME LINE L1 5294 5701 -469 1076 326 30 8 chr1 168251379 168251778 -74412575 + L1MA6 LINE L1 305 712 -5537 3189 250 102 16 chr1 168252267 168253717 -74410636 + L1MA6 LINE L1 539 2101 -4101 11602 170 52 12 chr1 168253744 168257370 -74406983 + L1MA6 LINE L1 2737 6482 0 254 236 91 18 chr1 168257419 168257529 -74406824 + L1ME LINE L1 5739 5856 -314 402 225 0 0 chr1 168257529 168257640 -74406713 + (TA)n Simple_repeat Simple_repeat 1 111 0 581 246 8 0 chr1 168257668 168257798 -74406555 - MIR SINE MIR -34 228 98 234 174 0 0 chr1 168258087 168258133 -74406220 + (CATA)n Simple_repeat Simple_repeat 3 48 0 29 47 0 0 chr1 168258156 168258199 -74406154 + AT_rich Low_complexity Low_complexity 1 43 0 3195 240 94 40 chr1 168258655 168260614 -74403739 + L1MCb LINE L1 4 2242 -4322 186 71 0 0 chr1 168260614 168260642 -74403711 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3195 240 94 40 chr1 168260642 168262107 -74402246 + L1MCb LINE L1 2242 3626 -2938 1082 277 56 97 chr1 168262110 168262716 -74401637 - MLT1D-int LTR MaLR -130 1241 661 2618 209 15 30 chr1 168262760 168263429 -74400924 - MLT1D-int LTR MaLR -712 659 1 821 194 37 57 chr1 168263429 168263871 -74400482 - MLT1D LTR MaLR 0 505 1 291 54 0 0 chr1 168263880 168263917 -74400436 + (CA)n Simple_repeat Simple_repeat 2 38 0 1173 169 76 0 chr1 168263917 168264154 -74400199 + L1MC3 LINE L1 7466 7720 -65 297 260 83 10 chr1 168264669 168264765 -74399588 + L2 LINE L2 2981 3083 -189 193 291 68 68 chr1 168264903 168265006 -74399347 + L2 LINE L2 3169 3271 -1 215 246 35 0 chr1 168265006 168265063 -74399290 + GA-rich Low_complexity Low_complexity 2 60 0 257 200 0 0 chr1 168265085 168265145 -74399208 - MLT-int LTR MaLR -1405 330 271 185 65 32 0 chr1 168265797 168265828 -74398525 + (TC)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr1 168265828 168265849 -74398504 + (CA)n Simple_repeat Simple_repeat 1 21 0 4625 85 10 1 chr1 168265939 168266633 -74397720 - L1PA8 LINE L1 -772 5374 4675 6234 60 5 0 chr1 168266633 168267423 -74396930 + L1PA8 LINE L1 5379 6172 0 448 361 12 0 chr1 168269556 168269725 -74394628 + L2 LINE L2 2647 2817 -497 201 202 96 87 chr1 168269776 168269880 -74394473 - MIR3 SINE MIR -102 106 2 414 302 23 39 chr1 168271106 168271235 -74393118 + MIR SINE MIR 1 127 -135 974 362 96 18 chr1 168271268 168272091 -74392262 + L2 LINE L2 2091 2980 -292 531 372 53 11 chr1 168272191 168272379 -74391974 + MER91A DNA MER1_type 1 196 0 479 305 71 0 chr1 168272482 168272623 -74391730 + L2 LINE L2 3121 3271 -1 413 271 32 45 chr1 168273105 168273203 -74391150 - MIR SINE MIR -1 261 164 455 175 0 0 chr1 168273203 168273283 -74391070 + MER116 DNA Mariner 1 80 0 413 271 32 45 chr1 168273283 168273339 -74391014 - MIR SINE MIR -98 164 109 416 309 48 8 chr1 168273906 168274032 -74390321 - L2 LINE L2 -9 3263 3133 375 291 189 0 chr1 168274185 168274333 -74390020 + MIR SINE MIR 74 249 -13 185 333 119 30 chr1 168274909 168275077 -74389276 + MIR3 SINE MIR 4 186 -22 288 91 0 0 chr1 168275091 168275135 -74389218 + (CTATA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr1 168275143 168275168 -74389185 + AT_rich Low_complexity Low_complexity 1 25 0 206 206 31 31 chr1 168275236 168275333 -74389020 + (TTA)n Simple_repeat Simple_repeat 1 97 0 513 246 39 0 chr1 168275353 168275483 -74388870 - MIR SINE MIR -22 240 106 200 379 73 17 chr1 168275538 168275715 -74388638 - L2 LINE L2 -159 3113 2927 1374 142 10 0 chr1 168275749 168275954 -74388399 + AluSg/x SINE Alu 93 299 -13 712 342 125 32 chr1 168276190 168276964 -74387389 - L2 LINE L2 -666 2648 1803 998 305 77 5 chr1 168277249 168277691 -74386662 + L2 LINE L2 2559 3029 -284 312 19 57 19 chr1 168277691 168277744 -74386609 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 257 272 237 18 chr1 168277789 168277903 -74386450 + L2 LINE L2 3173 3311 -2 185 419 65 0 chr1 168277992 168278116 -74386237 - L2 LINE L2 -2 3270 3139 191 171 0 0 chr1 168279232 168279267 -74385086 - L2 LINE L2 0 3272 3238 740 299 77 26 chr1 168279886 168280197 -74384156 - MLT1J2 LTR MaLR -45 405 79 377 286 90 8 chr1 168280754 168280887 -74383466 - MER20B DNA MER1_type -606 177 34 193 264 44 77 chr1 168282381 168282472 -74381881 - L2 LINE L2 -3 3269 3182 925 264 100 37 chr1 168283137 168283538 -74380815 + L2 LINE L2 2888 3313 0 213 221 12 23 chr1 168283737 168283823 -74380530 + GA-rich Low_complexity Low_complexity 2 86 0 3590 245 57 85 chr1 168285437 168286329 -74378024 + L1ME LINE L1 3109 4025 -2121 1350 168 56 7 chr1 168286329 168286633 -74377720 - L1MA9 LINE L1 0 6312 5994 3590 245 57 85 chr1 168286633 168286939 -74377414 + L1ME LINE L1 4025 4338 -1808 1857 176 0 0 chr1 168286939 168287223 -74377130 - AluSx SINE Alu -26 286 3 3590 245 57 85 chr1 168287223 168288285 -74376068 + L1ME LINE L1 4338 5305 -841 287 333 0 0 chr1 168288464 168288530 -74375823 + L1PA15 LINE L1 1202 1267 -5520 284 0 28 0 chr1 168288530 168288566 -74375787 + (CTG)n Simple_repeat Simple_repeat 2 38 0 2530 197 43 12 chr1 168288583 168289076 -74375277 + L1PA15 LINE L1 1317 1824 -4963 1970 177 120 5 chr1 168289076 168289460 -74374893 - MSTA LTR MaLR 0 428 1 7977 159 64 33 chr1 168289465 168290991 -74373362 - MSTA-int LTR MaLR -6 1574 1 2060 147 132 5 chr1 168290991 168291371 -74372982 - MSTA LTR MaLR 0 428 1 17013 196 28 13 chr1 168291371 168291481 -74372872 + L1PA15 LINE L1 1839 1946 -4870 2112 147 0 3 chr1 168291481 168291793 -74372560 + AluSx SINE Alu 1 311 -1 17013 196 28 13 chr1 168291793 168293253 -74371100 + L1PA15 LINE L1 1946 3383 -3433 2468 84 0 0 chr1 168293253 168293563 -74370790 + AluY SINE Alu 1 310 -1 17013 196 28 13 chr1 168293563 168296878 -74367475 + L1PA15 LINE L1 3383 6809 -7 6170 167 50 3 chr1 168296886 168298902 -74365451 + L1PA13 LINE L1 4117 6160 -3 26 0 0 0 chr1 168298915 168298941 -74365412 + AT_rich Low_complexity Low_complexity 1 26 0 825 240 112 9 chr1 168298952 168299290 -74365063 + L1ME LINE L1 5295 5667 -497 653 315 91 30 chr1 168299715 168300251 -74364102 - HAL1 LINE L1 -1875 632 64 1069 125 42 12 chr1 168300336 168300504 -74363849 - AluSg/x SINE Alu -10 300 128 803 317 58 61 chr1 168300537 168301313 -74363040 - L1MEd LINE L1 -5102 1017 244 366 352 118 20 chr1 168301317 168301664 -74362689 + L1MEc LINE L1 38 418 -5978 499 302 19 33 chr1 168301891 168302103 -74362250 - MER58C DNA MER1_type 0 215 7 3153 253 65 31 chr1 168302144 168303142 -74361211 + L1M2 LINE L1 972 1935 -4447 1160 226 37 76 chr1 168303142 168303522 -74360831 + MLT1A1 LTR MaLR 1 365 0 3153 253 65 31 chr1 168303522 168305001 -74359352 + L1M2 LINE L1 1935 3380 -3002 266 0 29 0 chr1 168305001 168305035 -74359318 + (AAATG)n Simple_repeat Simple_repeat 2 36 0 3306 198 14 9 chr1 168305060 168305793 -74358560 + L1M2 LINE L1 3556 4291 -2091 1077 242 86 19 chr1 168305785 168306278 -74358075 - L1M4 LINE L1 -3594 2788 2329 * 491 0 0 17 chr1 168306278 168306338 -74358015 + (TA)n Simple_repeat Simple_repeat 2 60 0 2262 96 0 31 chr1 168306343 168306666 -74357687 - AluSq SINE Alu 0 313 1 1077 242 86 19 chr1 168306666 168306788 -74357565 - L1M4 LINE L1 -4056 2326 2121 1004 194 159 50 chr1 168306865 168306920 -74357433 + L1MC4 LINE L1 6872 6920 -1122 2251 105 3 0 chr1 168306920 168307225 -74357128 + AluSx SINE Alu 1 306 -6 1004 194 159 50 chr1 168307225 168307571 -74356782 + L1MC4 LINE L1 6920 7317 -725 5120 172 42 1 chr1 168307573 168309140 -74355213 - L1MA4 LINE L1 -7 6293 4672 1907 252 55 33 chr1 168309153 168309194 -74355159 + L1MC4 LINE L1 7329 7368 -674 568 63 13 0 chr1 168309194 168309273 -74355080 + MADE1 DNA Mariner 1 80 0 1907 252 55 33 chr1 168309273 168309926 -74354427 + L1MC4 LINE L1 7368 8038 -4 2655 238 19 10 chr1 168309939 168311508 -74352845 + L1MEc LINE L1 50 1742 -4543 1472 238 81 155 chr1 168311505 168312337 -74352016 - MLT-int LTR MaLR -201 1534 765 * 1784 211 26 3 chr1 168312337 168312725 -74351628 - MSTD-int LTR MaLR -1338 397 1 1604 174 126 14 chr1 168312725 168313081 -74351272 - MSTD LTR MaLR 0 396 1 1480 130 31 31 chr1 168313081 168313140 -74351213 + L1M2 LINE L1 5467 5525 -766 1748 209 58 17 chr1 168313140 168313551 -74350802 + MSTC LTR MaLR 1 428 0 1480 130 31 31 chr1 168313551 168313752 -74350601 + L1M2 LINE L1 5524 5727 -564 219 339 98 51 chr1 168315687 168316023 -74348330 + L2 LINE L2 2610 2961 -353 426 65 0 0 chr1 168316295 168316357 -74347996 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 997 239 45 75 chr1 168316383 168316784 -74347569 + MLT1B LTR MaLR 2 390 0 596 209 0 0 chr1 168316784 168316899 -74347454 + MLT1B-int LTR MaLR 1 115 -1256 * 2154 202 4 48 chr1 168316894 168317395 -74346958 + MLT1B-int LTR MaLR 264 742 -629 352 200 47 12 chr1 168317510 168317595 -74346758 + MLT1B-int LTR MaLR 679 766 -969 588 65 0 0 chr1 168317736 168317813 -74346540 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 559 350 98 42 chr1 168318335 168318744 -74345609 + L2 LINE L2 2840 3271 -1 201 176 0 103 chr1 168318820 168318888 -74345465 - MIR SINE MIR -49 213 153 6791 26 1 0 chr1 168319643 168320475 -74343878 - L1PA3 LINE L1 -5 6150 5318 * 16035 37 1 4 chr1 168320467 168322529 -74341824 + L1P LINE L1 548 2603 -3543 540 244 0 0 chr1 168322594 168322713 -74341640 + MER104 DNA Tc2 59 177 -3 350 264 99 16 chr1 168322758 168322879 -74341474 + MLT1L LTR MaLR 341 471 -144 270 343 20 10 chr1 168322879 168322981 -74341372 - MIR SINE MIR -113 149 47 315 256 0 0 chr1 168325536 168325626 -74338727 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 258 341 54 31 chr1 168326087 168326216 -74338137 + L2 LINE L2 3141 3272 0 397 348 94 19 chr1 168326304 168326571 -74337782 + L2 LINE L2 3027 3313 0 246 62 0 0 chr1 168326788 168326820 -74337533 + (CA)n Simple_repeat Simple_repeat 1 32 0 26 64 0 0 chr1 168329274 168329321 -74335032 + AT_rich Low_complexity Low_complexity 1 47 0 2285 143 59 7 chr1 168329573 168329979 -74334374 - MSTA LTR MaLR -1 427 1 549 221 50 59 chr1 168330970 168331192 -74333161 + MER112 DNA MER1_type 40 259 -1 225 65 0 0 chr1 168331419 168331450 -74332903 + (CA)n Simple_repeat Simple_repeat 2 32 0 1090 282 171 21 chr1 168332202 168332926 -74331427 + L2 LINE L2 2443 3292 -21 253 347 29 24 chr1 168333889 168334059 -74330294 + MIR SINE MIR 52 222 -40 366 259 145 112 chr1 168334059 168334460 -74329893 - MLT1H LTR MaLR 0 549 136 354 384 8 8 chr1 168334754 168334887 -74329466 + MIR SINE MIR 2 134 -128 231 136 114 0 chr1 168334885 168334929 -74329424 + L2 LINE L2 2174 2222 -1092 * 1694 292 151 10 chr1 168335408 168336362 -74327991 + L2 LINE L2 2212 3313 0 352 278 11 0 chr1 168336369 168336459 -74327894 + MIR SINE MIR 166 256 -6 1876 144 35 37 chr1 168336596 168336972 -74327381 - THE1C LTR MaLR 0 375 1 184 217 87 72 chr1 168337646 168337715 -74326638 - L2 LINE L2 -3 3269 3200 185 309 147 15 chr1 168337872 168338008 -74326345 - L2 LINE L2 -220 3052 2899 3270 159 3 2 chr1 168338661 168339228 -74325125 + L1PA16 LINE L1 5577 6144 -22 587 288 131 26 chr1 168339341 168339701 -74324652 + MLT1J1 LTR MaLR 44 399 -10 263 316 63 68 chr1 168339768 168339914 -74324439 - MIR SINE MIR 0 262 116 315 0 0 0 chr1 168339914 168339949 -74324404 + (TTG)n Simple_repeat Simple_repeat 2 36 0 263 316 63 68 chr1 168339949 168339992 -74324361 - MIR SINE MIR -146 116 74 222 246 106 140 chr1 168340431 168340659 -74323694 - MIR SINE MIR -9 253 36 730 248 51 14 chr1 168341416 168341630 -74322723 - LTR33 LTR ERVL -294 227 6 399 263 21 115 chr1 168343232 168343475 -74320878 + L2 LINE L2 2218 2437 -877 2331 114 0 0 chr1 168343743 168344049 -74320304 - AluSg SINE Alu -4 306 1 503 319 60 6 chr1 168344931 168345111 -74319242 + MIR SINE MIR 16 205 -57 279 344 200 5 chr1 168345111 168345326 -74319027 + MIR SINE MIR 3 259 -3 572 309 82 34 chr1 168346969 168347202 -74317151 - MIR SINE MIR 0 262 19 523 324 34 11 chr1 168347288 168347464 -74316889 - MIR3 SINE MIR -13 195 16 355 301 53 0 chr1 168348060 168348173 -74316180 + L2 LINE L2 3193 3311 -2 239 349 47 31 chr1 168348418 168348610 -74315743 + MIR3 SINE MIR 3 197 -11 252 0 0 0 chr1 168350371 168350399 -74313954 + (A)n Simple_repeat Simple_repeat 1 28 0 298 276 33 105 chr1 168350462 168350614 -74313739 - L2 LINE L2 -5 3267 3127 894 180 29 12 chr1 168351168 168351340 -74313013 + MIR SINE MIR 14 188 -74 340 281 9 53 chr1 168352191 168352305 -74312048 + MER70B LTR ERVL 454 562 -16 468 282 41 23 chr1 168352424 168352621 -74311732 + MIR SINE MIR 63 261 -1 1213 233 63 105 chr1 168354145 168354621 -74309732 + L2 LINE L2 2855 3310 -3 274 340 71 43 chr1 168354947 168355088 -74309265 - MIR3 SINE MIR -47 161 17 2674 35 0 6 chr1 168355164 168355477 -74308876 - AluY SINE Alu 0 311 1 2243 102 3 0 chr1 168358195 168358480 -74305873 - AluSp SINE Alu -17 296 11 787 315 73 19 chr1 168358754 168359122 -74305231 - MLT1J2 LTR MaLR -6 444 57 459 0 0 0 chr1 168359331 168359382 -74304971 + (TA)n Simple_repeat Simple_repeat 2 52 0 1607 188 3 24 chr1 168359387 168359679 -74304674 - AluJo SINE Alu -26 286 1 21 0 0 0 chr1 168359695 168359716 -74304637 + AT_rich Low_complexity Low_complexity 1 21 0 2858 10 0 0 chr1 168359722 168360031 -74304322 + AluYa5 SINE Alu 1 309 -2 307 298 70 35 chr1 168360861 168361089 -74303264 + L1MEd LINE L1 1015 1250 -5280 1188 199 26 0 chr1 168361098 168361370 -74302983 - L1P LINE L1 -2508 3638 3360 2626 133 2 5 chr1 168361373 168361800 -74302553 + L1PA13 LINE L1 5734 6159 -4 594 219 18 30 chr1 168361988 168362157 -74302196 + L1ME2 LINE L1 5998 6164 0 420 321 93 21 chr1 168362165 168362402 -74301951 + L1MEd LINE L1 1381 1634 -4896 261 286 29 7 chr1 168362424 168362564 -74301789 + HAL1 LINE L1 1396 1538 -969 341 283 44 50 chr1 168363048 168363207 -74301146 + L1MEd LINE L1 1872 2029 -4511 625 248 82 64 chr1 168363505 168363980 -74300373 + L1MEd LINE L1 2469 2909 -3631 854 312 68 37 chr1 168364392 168365737 -74298616 + L1MEd LINE L1 3684 5062 -1478 226 250 0 0 chr1 168365784 168365852 -74298501 + L1M4 LINE L1 2606 2673 -3473 352 313 54 0 chr1 168365889 168366001 -74298352 + L1MEc LINE L1 2310 2427 -3969 343 256 95 14 chr1 168366019 168366230 -74298123 + L1MEc LINE L1 2336 2563 -3652 24 53 0 0 chr1 168366384 168366422 -74297931 + AT_rich Low_complexity Low_complexity 1 38 0 367 275 131 44 chr1 168366883 168367043 -74297310 + HAL1b LINE L1 89 262 -1086 301 213 0 64 chr1 168367053 168367147 -74297206 + HAL1b LINE L1 373 460 -888 21 57 0 0 chr1 168367189 168367224 -74297129 + AT_rich Low_complexity Low_complexity 1 35 0 264 306 22 29 chr1 168367241 168367351 -74297002 + MIR SINE MIR 3 115 -93 485 303 82 48 chr1 168367606 168367837 -74296516 + MIR SINE MIR 23 261 -1 277 281 11 11 chr1 168368004 168368093 -74296260 + MIR3 SINE MIR 118 206 -2 788 284 181 17 chr1 168368298 168368717 -74295636 - L3 LINE CR1 -4 1573 1086 1053 326 47 35 chr1 168368724 168369498 -74294855 + L1M3a LINE L1 1 783 -5172 2608 251 51 14 chr1 168369675 168370682 -74293671 + L1MA6 LINE L1 556 1591 -4082 942 154 33 0 chr1 168370685 168370867 -74293486 + L1MA6 LINE L1 3745 3932 -2396 644 138 9 0 chr1 168370897 168371013 -74293340 + L1 LINE L1 4471 4587 -1559 547 110 0 0 chr1 168371010 168371092 -74293261 + L1MA6 LINE L1 3946 4027 -2301 * 5221 137 28 3 chr1 168371087 168372034 -74292319 + L1MA6 LINE L1 5513 6482 0 2343 101 0 0 chr1 168372125 168372433 -74291920 - AluSx SINE Alu -4 308 1 529 228 72 78 chr1 168372878 168373071 -74291282 + MIR SINE MIR 52 243 -19 * 558 286 36 60 chr1 168373068 168373320 -74291033 - L3 LINE CR1 -676 901 656 197 386 86 14 chr1 168373868 168374008 -74290345 + L2 LINE L2 2943 3092 -180 3768 268 107 17 chr1 168374278 168375879 -74288474 - L2 LINE L2 0 3313 1582 2578 196 36 6 chr1 168376108 168376640 -74287713 - MLT2B3 LTR ERVL -6 548 1 310 308 27 54 chr1 168377036 168377221 -74287132 + MLT1J2 LTR MaLR 267 446 -4 415 330 65 15 chr1 168378549 168378791 -74285562 + MIR SINE MIR 6 250 -12 653 190 26 134 chr1 168379572 168379841 -74284512 + MER112 DNA MER1_type 21 260 0 5100 223 78 25 chr1 168379939 168380769 -74283584 + L1MD1 LINE L1 27 811 -5729 1614 157 195 19 chr1 168380769 168381133 -74283220 - MSTA LTR MaLR 0 428 1 5100 223 78 25 chr1 168381133 168381521 -74282832 + L1MD1 LINE L1 811 1177 -5363 2464 75 0 3 chr1 168381521 168381827 -74282526 + AluY SINE Alu 1 305 -6 5100 223 78 25 chr1 168381827 168382149 -74282204 + L1MD1 LINE L1 1177 1650 -4890 546 160 17 77 chr1 168382166 168382347 -74282006 + L1MB4 LINE L1 3797 3966 -2180 4561 193 63 22 chr1 168382404 168384196 -74280157 + L1MB4 LINE L1 4304 6179 -1 306 309 21 0 chr1 168384208 168384302 -74280051 + L1MC4 LINE L1 6914 7009 -1033 372 230 79 75 chr1 168384319 168384597 -74279756 + L1MC5 LINE L1 6923 7201 -760 305 256 39 39 chr1 168384672 168384801 -74279552 + L1MC4 LINE L1 7367 7495 -547 * 3027 206 88 27 chr1 168384799 168386744 -74277609 + L1MD1 LINE L1 4564 6618 -18 254 215 203 13 chr1 168386749 168386828 -74277525 + MIR SINE MIR 44 137 -71 41033 32 21 1 chr1 168390249 168396268 -74268085 + L1PA2 LINE L1 11 6150 -5 243 0 0 0 chr1 168396279 168396306 -74268047 + (A)n Simple_repeat Simple_repeat 1 27 0 374 253 207 0 chr1 168397588 168397738 -74266615 + MER5A DNA MER1_type 4 189 0 201 309 12 12 chr1 168397835 168397916 -74266437 - MIR SINE MIR 0 262 182 326 154 0 46 chr1 168398430 168398495 -74265858 - MIR3 SINE MIR -132 76 15 189 368 62 35 chr1 168399099 168399243 -74265110 + L2 LINE L2 3123 3270 -2 241 292 33 58 chr1 168399945 168400065 -74264288 - MIR SINE MIR -78 184 68 1781 207 75 6 chr1 168400355 168400848 -74263505 - MER69 DNA AcHobo 0 2526 2000 1755 262 58 4 chr1 168400836 168401333 -74263020 - MER69 DNA AcHobo -1958 568 45 * 230 158 0 0 chr1 168404036 168404074 -74260279 - MLT2F LTR ERVL -7 656 619 186 250 0 0 chr1 168404077 168404133 -74260220 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1303 213 202 9 chr1 168404133 168404624 -74259729 - MLT2F LTR ERVL -58 605 3 261 248 221 11 chr1 168406203 168406359 -74257994 + MIR SINE MIR 31 212 -50 330 345 18 60 chr1 168406433 168406601 -74257752 - MIR SINE MIR -45 163 3 731 193 0 8 chr1 168406880 168406999 -74257354 - FLAM_A SINE Alu -15 118 1 25 31 0 0 chr1 168407822 168407854 -74256499 + AT_rich Low_complexity Low_complexity 1 32 0 366 274 39 99 chr1 168407861 168408449 -74255904 - L1MC5 LINE L1 -70 7891 7339 320 305 104 18 chr1 168408458 168408622 -74255731 + MLT1H1 LTR MaLR 77 254 -301 280 295 72 7 chr1 168408780 168408919 -74255434 + MLT1H1 LTR MaLR 448 595 0 422 268 41 14 chr1 168408926 168409226 -74255127 - L1MCc LINE L1 -4887 1536 1287 2489 74 0 0 chr1 168410255 168410554 -74253799 - AluY SINE Alu -12 299 1 202 236 109 0 chr1 168410651 168410706 -74253647 + MIR SINE MIR 81 141 -67 407 312 198 39 chr1 168410799 168411042 -74253311 + L2 LINE L2 2809 3012 -260 3262 126 76 2 chr1 168411042 168411558 -74252795 + MER41C LTR ERV1 1 554 0 407 312 198 39 chr1 168411558 168411673 -74252680 + L2 LINE L2 3012 3224 -48 218 424 15 15 chr1 168411746 168411878 -74252475 - L2 LINE L2 0 3272 3141 183 42 0 0 chr1 168412533 168412557 -74251796 + (CAA)n Simple_repeat Simple_repeat 2 25 0 372 281 23 8 chr1 168414320 168414448 -74249905 + LTR67 LTR ERVL 428 557 0 206 321 248 0 chr1 168414760 168414869 -74249484 + MIR SINE MIR 18 153 -109 246 327 20 50 chr1 168414956 168415057 -74249296 - L2 LINE L2 -177 3095 2998 527 253 133 6 chr1 168415077 168415235 -74249118 - MIR SINE MIR 0 262 85 223 303 8 74 chr1 168416182 168416304 -74248049 - MIR SINE MIR -51 211 98 370 343 94 17 chr1 168416731 168416912 -74247441 - MER91A DNA MER1_type -1 195 1 245 285 44 60 chr1 168417425 168417744 -74246609 + L1MEd LINE L1 896 1209 -4910 409 305 72 82 chr1 168417781 168418164 -74246189 + L1MEd LINE L1 1284 1694 -796 676 279 113 60 chr1 168418237 168418792 -74245561 + L1MEd LINE L1 3181 3765 -2364 683 215 35 18 chr1 168418798 168419026 -74245327 + L1MC5 LINE L1 7680 7911 -50 549 284 18 51 chr1 168419135 168419470 -74244883 + L1MEd LINE L1 3873 4196 -1933 300 230 37 37 chr1 168419537 168419672 -74244681 + L1MEd LINE L1 4521 4655 -1474 264 322 0 0 chr1 168419855 168419970 -74244383 + L1P LINE L1 4901 5015 -1131 2047 92 0 4 chr1 168620014 168620287 -74044066 - AluY SINE Alu -39 272 1 21 0 0 0 chr1 168620694 168620715 -74043638 + AT_rich Low_complexity Low_complexity 1 21 0 2323 105 0 6 chr1 168621381 168621694 -74042659 - AluSx SINE Alu -1 311 1 299 203 189 0 chr1 168622174 168622248 -74042105 + MIR3 SINE MIR 100 187 -21 721 143 131 12 chr1 168622361 168622529 -74041824 - MER53 DNA DNA 0 189 2 197 237 0 34 chr1 168622673 168622732 -74041621 + MIR3 SINE MIR 137 193 -15 756 155 0 42 chr1 168622929 168623071 -74041282 - FLAM_C SINE Alu -7 136 1 350 261 0 26 chr1 168623104 168623219 -74041134 - LTR67 LTR ERVL -15 542 431 1815 162 3 13 chr1 168623596 168623898 -74040455 + AluJb SINE Alu 1 299 -13 1285 117 0 11 chr1 168624015 168624195 -74040158 + AluSp SINE Alu 125 302 -11 1926 132 42 11 chr1 168624280 168624567 -74039786 + AluSg SINE Alu 3 298 -12 359 255 81 13 chr1 168624656 168624805 -74039548 - MLT1J LTR MaLR 0 511 353 2067 138 3 3 chr1 168625052 168625356 -74038997 + AluSx SINE Alu 1 304 -8 1001 175 12 0 chr1 168625363 168625534 -74038819 + AluSg/x SINE Alu 138 310 0 2702 190 100 51 chr1 168625606 168626342 -74038011 + L1MB8 LINE L1 4492 5190 -988 1763 179 11 0 chr1 168626342 168626654 -74037699 + AluSx SINE Alu 1 315 0 2702 190 100 51 chr1 168626654 168626689 -74037664 + L1MB8 LINE L1 5190 5222 -956 2186 100 3 10 chr1 168626689 168626990 -74037363 + AluSx SINE Alu 2 300 -12 2702 190 100 51 chr1 168626990 168627620 -74036733 + L1MB8 LINE L1 5222 5985 -193 1682 182 0 27 chr1 168628117 168628414 -74035939 - AluJo SINE Alu -23 289 1 2573 47 0 0 chr1 168628768 168629066 -74035287 - AluY SINE Alu -13 298 1 260 233 153 7 chr1 168629287 168629437 -74034916 - L1ME4a LINE L1 -207 5914 5743 299 273 118 31 chr1 168629461 168629626 -74034727 + L1MEd LINE L1 1083 1232 -5078 2224 90 14 0 chr1 168629626 168629915 -74034438 + AluSp SINE Alu 2 294 -19 299 273 118 31 chr1 168629915 168630076 -74034277 + L1MEd LINE L1 1232 1472 -4838 2091 98 28 0 chr1 168630877 168631162 -74033191 - AluSg SINE Alu -17 293 1 234 0 0 0 chr1 168631795 168631821 -74032532 + (T)n Simple_repeat Simple_repeat 1 26 0 841 160 7 7 chr1 168631841 168631985 -74032368 - AluJb SINE Alu -168 144 1 1316 175 80 42 chr1 168632027 168632313 -74032040 - AluJo SINE Alu -15 297 1 2088 105 20 0 chr1 168632535 168632830 -74031523 - AluSg SINE Alu -9 301 1 1521 174 0 0 chr1 168632943 168633179 -74031174 + AluJb SINE Alu 2 237 -75 279 65 16 22 chr1 168633216 168633277 -74031076 + Alu SINE Alu 253 292 -10 2355 89 0 7 chr1 168634149 168634440 -74029913 + AluSg SINE Alu 1 289 -21 442 272 97 85 chr1 168634618 168634838 -74029515 - L1ME4a LINE L1 -804 5342 5126 2370 101 0 16 chr1 168634838 168635155 -74029198 - AluSx SINE Alu 0 312 1 442 272 97 85 chr1 168635155 168635368 -74028985 - L1ME4a LINE L1 -1020 5126 4904 345 343 25 0 chr1 168635922 168636040 -74028313 + MIR SINE MIR 31 149 -67 1701 199 0 0 chr1 168636040 168636326 -74028027 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr1 168636673 168636706 -74027647 + AT_rich Low_complexity Low_complexity 1 33 0 207 362 117 27 chr1 168637328 168637516 -74026837 + L2 LINE L2 2554 2758 -556 366 230 0 0 chr1 168637518 168637592 -74026761 + MLT1L LTR MaLR 6 79 -536 2318 99 0 3 chr1 168637628 168637931 -74026422 + AluSx SINE Alu 1 302 -10 2173 106 0 13 chr1 168637932 168638234 -74026119 + AluSg SINE Alu 1 298 -12 749 170 0 15 chr1 168638482 168638617 -74025736 - FLAM_C SINE Alu 0 133 1 1919 106 55 38 chr1 168638628 168638921 -74025432 - AluSq SINE Alu -15 298 1 198 290 26 129 chr1 168638933 168639126 -74025227 + L2 LINE L2 2246 2418 -896 3388 77 57 2 chr1 168639127 168639618 -74024735 - MER41A LTR ERV1 0 554 37 542 210 0 0 chr1 168639758 168639858 -74024495 - FLAM_C SINE Alu -37 106 7 406 256 65 57 chr1 168640036 168640266 -74024087 - L1MEd LINE L1 -5022 1097 866 1938 158 7 10 chr1 168640268 168640578 -74023775 - AluJo SINE Alu -3 309 1 1152 83 0 0 chr1 168640770 168640914 -74023439 - AluSg/x SINE Alu -5 307 164 514 328 122 17 chr1 168640935 168641295 -74023058 - L1MEd LINE L1 -5444 675 278 303 319 55 37 chr1 168641426 168641589 -74022764 - L1MEd LINE L1 -5947 172 7 2243 75 14 0 chr1 168643193 168643496 -74020857 - AluY SINE Alu 0 307 1 845 217 0 0 chr1 168643573 168643739 -74020614 - FRAM SINE Alu 0 166 1 1533 142 8 4 chr1 168643759 168644012 -74020341 - MER47A DNA MER2_type -111 255 2 210 375 54 27 chr1 168644062 168644174 -74020179 - L2 LINE L2 -21 3251 3137 510 270 139 33 chr1 168644300 168644515 -74019838 + MIR SINE MIR 12 249 -13 2457 79 0 25 chr1 168644855 168645172 -74019181 - AluY SINE Alu -2 309 1 2082 97 18 0 chr1 168645925 168646224 -74018129 + AluSq SINE Alu 1 304 0 1968 189 83 95 chr1 168646409 168647145 -74017208 - LTR8A LTR ERV1 0 727 1 527 256 108 63 chr1 168647181 168647450 -74016903 - MLT1J LTR MaLR -228 283 3 1011 98 0 0 chr1 168647863 168647995 -74016358 + AluSq/x SINE Alu 1 132 -181 427 284 74 31 chr1 168648603 168648765 -74015588 + L2 LINE L2 2688 2856 -458 201 333 0 37 chr1 168648829 168648883 -74015470 - L3 LINE CR1 -29 1548 1497 941 140 0 7 chr1 168649828 168649964 -74014389 + AluSq/x SINE Alu 1 135 -177 2113 117 28 0 chr1 168649967 168650258 -74014095 + AluSp SINE Alu 1 299 -14 1850 188 140 10 chr1 168650483 168650977 -74013376 - LTR64 LTR ERVK 0 558 1 2491 83 3 0 chr1 168651142 168651454 -74012899 + AluSp SINE Alu 1 313 0 1036 175 40 0 chr1 168651494 168651671 -74012682 + AluJo SINE Alu 6 189 -123 353 200 86 57 chr1 168652104 168652209 -74012144 + MIR SINE MIR 2 109 -153 1960 110 45 17 chr1 168652285 168652575 -74011778 + AluSq SINE Alu 2 299 -14 2051 125 13 35 chr1 168652588 168652901 -74011452 + AluSx SINE Alu 1 306 -6 489 244 23 8 chr1 168652923 168653054 -74011299 - MIR SINE MIR -35 227 95 1564 181 7 11 chr1 168653582 168653859 -74010494 + AluJb SINE Alu 1 276 -36 271 91 45 0 chr1 168653863 168653907 -74010446 + Alu SINE Alu 247 292 -9 27 100 0 0 chr1 168654151 168654241 -74010112 + AT_rich Low_complexity Low_complexity 1 90 0 414 174 0 0 chr1 168655284 168655353 -74009000 - MER8 DNA MER2_type 0 239 171 636 275 6 11 chr1 168655390 168655568 -74008785 - MER8 DNA MER2_type -62 177 1 1629 149 58 7 chr1 168655688 168655963 -74008390 + AluJb SINE Alu 1 289 -23 180 0 0 0 chr1 168656294 168656314 -74008039 + (TA)n Simple_repeat Simple_repeat 2 21 0 2343 98 0 0 chr1 168657008 168657304 -74007049 - AluSg SINE Alu -14 296 1 26 30 0 0 chr1 168657362 168657395 -74006958 + AT_rich Low_complexity Low_complexity 1 33 0 263 180 20 0 chr1 168657694 168657744 -74006609 + C-rich Low_complexity Low_complexity 2 52 0 324 211 0 0 chr1 168657745 168657816 -74006537 + CT-rich Low_complexity Low_complexity 2 72 0 209 333 73 0 chr1 168658454 168658577 -74005776 - L2 LINE L2 -459 2855 2724 2096 110 0 7 chr1 168658949 168659231 -74005122 - AluSx SINE Alu -26 286 7 2068 120 3 0 chr1 168659285 168659568 -74004785 - AluSx SINE Alu -28 284 1 232 405 0 0 chr1 168660222 168660311 -74004042 + L2 LINE L2 1818 1906 -1408 194 294 112 59 chr1 168660314 168660453 -74003900 + L2 LINE L2 1875 2028 -1286 1671 165 45 0 chr1 168660453 168660744 -74003609 - AluJb SINE Alu -8 304 1 194 294 112 59 chr1 168660744 168660791 -74003562 + L2 LINE L2 2028 2071 -1243 229 365 0 0 chr1 168660843 168660917 -74003436 - L2 LINE L2 -39 3233 3160 284 325 87 24 chr1 168661105 168661231 -74003122 + L2 LINE L2 3139 3272 0 668 163 43 60 chr1 168661534 168661687 -74002666 - MER20 DNA MER1_type -9 210 59 756 168 0 8 chr1 168661687 168661812 -74002541 + FLAM_A SINE Alu 5 128 -5 668 163 43 60 chr1 168661812 168661842 -74002511 - MER20 DNA MER1_type -160 59 30 2188 90 3 10 chr1 168662679 168662979 -74001374 + AluSx SINE Alu 1 298 -14 2135 65 25 4 chr1 168662981 168663257 -74001096 + AluSc SINE Alu 1 282 -27 1791 110 0 0 chr1 168663257 168663502 -74000851 + AluSg SINE Alu 60 305 -5 1861 158 0 3 chr1 168664833 168665118 -73999235 - AluJb SINE Alu -28 284 1 2122 82 8 4 chr1 168665136 168665404 -73998949 + AluSc SINE Alu 23 291 -18 366 246 8 90 chr1 168666505 168666639 -73997714 + MIR SINE MIR 90 212 -50 2127 114 0 0 chr1 168666886 168667187 -73997166 + AluSx SINE Alu 1 301 0 917 236 29 77 chr1 168667242 168667678 -73996675 + MLT1E2 LTR MaLR 4 426 -186 2331 78 10 0 chr1 168668296 168668591 -73995762 - AluSp SINE Alu -13 300 3 186 317 10 69 chr1 168668867 168668968 -73995385 + MIR SINE MIR 94 188 -74 266 44 0 67 chr1 168669980 168670025 -73994328 + (T)n Simple_repeat Simple_repeat 1 42 0 1931 84 4 0 chr1 168671300 168671538 -73992815 - AluSg SINE Alu -12 298 60 2113 99 46 0 chr1 168671978 168672261 -73992092 - AluSg SINE Alu -14 296 1 252 220 0 0 chr1 168672838 168672888 -73991465 - MER53 DNA DNA -139 50 1 261 345 14 7 chr1 168672935 168673074 -73991279 + L2 LINE L2 2292 2431 -883 299 140 32 11 chr1 168673316 168673409 -73990944 + (TA)n Simple_repeat Simple_repeat 2 96 0 195 69 0 0 chr1 168673456 168673485 -73990868 + (TA)n Simple_repeat Simple_repeat 2 30 0 225 327 0 0 chr1 168675100 168675155 -73989198 - L3 LINE CR1 -19 1558 1504 523 259 58 11 chr1 168675220 168675394 -73988959 + MARNA DNA Mariner 170 351 -235 2394 74 7 0 chr1 168676504 168676801 -73987552 + AluSp SINE Alu 1 299 -14 620 179 123 0 chr1 168677019 168677125 -73987228 - FLAM_A SINE Alu -16 126 8 2442 70 7 0 chr1 168677744 168678044 -73986309 - AluY SINE Alu -9 302 1 1933 158 40 21 chr1 168678826 168679206 -73985147 + L1MB7 LINE L1 5462 5848 -336 775 182 7 21 chr1 168679207 168679350 -73985003 + FAM SINE Alu 34 174 -11 1342 173 103 0 chr1 168679354 168679626 -73984727 + L1MB7 LINE L1 5860 6159 -25 1637 162 38 0 chr1 168679650 168679915 -73984438 + AluSx SINE Alu 1 275 -37 287 286 44 0 chr1 168679925 168680016 -73984337 + GA-rich Low_complexity Low_complexity 6 100 0 2031 161 7 0 chr1 168680016 168680326 -73984027 + AluSq SINE Alu 1 312 -1 318 91 0 0 chr1 168680340 168680384 -73983969 + Alu SINE Alu 1 44 -258 907 145 7 0 chr1 168680889 168681027 -73983326 - AluSq/x SINE Alu -173 139 1 2143 161 132 96 chr1 168681028 168681644 -73982709 - L1M4b LINE L1 -5304 1555 918 2270 107 0 0 chr1 168682071 168682380 -73981973 + AluSx SINE Alu 1 309 -3 2271 109 0 0 chr1 168682439 168682732 -73981621 + AluSx SINE Alu 7 299 -13 1824 143 7 0 chr1 168683119 168683406 -73980947 - AluSg SINE Alu -21 289 1 258 348 13 34 chr1 168683413 168683649 -73980704 - HAL1b LINE L1 -886 462 232 383 328 158 27 chr1 168683803 168684138 -73980215 + L2 LINE L2 2379 2757 -557 858 230 36 25 chr1 168684156 168684208 -73980145 + AluJb SINE Alu 84 134 -178 2151 105 3 3 chr1 168684208 168684523 -73979830 + AluSp SINE Alu 1 315 0 858 230 36 25 chr1 168684523 168684665 -73979688 + AluJb SINE Alu 134 281 -31 959 189 0 6 chr1 168685036 168685216 -73979137 + FRAM SINE Alu 1 176 0 303 300 20 10 chr1 168685220 168685320 -73979033 - MIR SINE MIR -7 255 155 2037 103 3 27 chr1 168685321 168685622 -73978731 - AluSg SINE Alu -16 294 1 2288 82 0 3 chr1 168685622 168685904 -73978449 - AluSx SINE Alu -22 290 10 2423 82 0 16 chr1 168685911 168686227 -73978126 - AluSx SINE Alu -1 311 1 562 292 183 45 chr1 168686497 168686784 -73977569 + L2 LINE L2 2395 2641 -672 2019 114 3 13 chr1 168686784 168687082 -73977271 + AluJb SINE Alu 1 295 -17 562 292 183 45 chr1 168687082 168687387 -73976966 + L2 LINE L2 2641 3065 -248 1338 174 7 57 chr1 168687471 168687648 -73976705 - AluJb SINE Alu -19 293 135 246 62 0 0 chr1 168687648 168687680 -73976673 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1338 174 7 57 chr1 168687680 168687800 -73976553 - AluJb SINE Alu -177 135 11 323 264 200 8 chr1 168687800 168687925 -73976428 + L2 LINE L2 3165 3313 0 2215 90 13 19 chr1 168688539 168688849 -73975504 - AluSq SINE Alu -5 308 1 2270 92 0 0 chr1 168689651 168689974 -73974379 + AluSx SINE Alu 1 323 0 1863 148 3 65 chr1 168690162 168690487 -73973866 + AluJb SINE Alu 1 305 -7 444 263 29 122 chr1 168691135 168691413 -73972940 + MER41B LTR ERV1 55 430 -205 211 143 143 0 chr1 168691720 168691769 -73972584 + MIR SINE MIR 175 230 -32 1842 130 69 0 chr1 168691798 168692075 -73972278 - AluSx SINE Alu -16 296 1 1469 172 80 60 chr1 168692305 168692475 -73971878 - MLT1D LTR MaLR -149 356 191 2057 106 17 10 chr1 168692475 168692767 -73971586 + AluSx SINE Alu 2 295 -17 1469 172 80 60 chr1 168692767 168692945 -73971408 - MLT1D LTR MaLR -314 191 1 871 254 47 39 chr1 168693324 168693580 -73970773 + MIR SINE MIR 5 262 0 2064 98 3 17 chr1 168693964 168694275 -73970078 - AluSx SINE Alu 0 307 1 189 0 0 0 chr1 168694301 168694322 -73970031 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1874 130 0 4 chr1 168694326 168694588 -73969765 - AluSx SINE Alu -30 282 22 2088 134 0 3 chr1 168695084 168695383 -73968970 + AluSq SINE Alu 1 298 -15 633 301 47 23 chr1 168695387 168695686 -73968667 + L1MC4 LINE L1 7705 8010 -32 2123 109 0 0 chr1 168695717 168696040 -73968313 + AluSx SINE Alu 1 323 0 1811 157 3 65 chr1 168696228 168696553 -73967800 + AluJb SINE Alu 1 305 -7 444 263 29 122 chr1 168697207 168697485 -73966868 + MER41B LTR ERV1 55 430 -205 211 143 143 0 chr1 168697792 168697841 -73966512 + MIR SINE MIR 175 230 -32 1866 128 66 7 chr1 168697858 168698147 -73966206 - AluSx SINE Alu -6 306 1 2094 101 11 0 chr1 168698359 168698645 -73965708 + AluSp SINE Alu 7 295 -18 554 147 49 0 chr1 168698645 168698747 -73965606 + L1MB8 LINE L1 2257 2363 -3783 3348 150 61 16 chr1 168698755 168699360 -73964993 + L1MB8 LINE L1 5547 6178 0 799 264 27 9 chr1 168699360 168699580 -73964773 + L1ME3 LINE L1 5939 6162 0 1903 159 30 0 chr1 168699585 168699880 -73964473 - AluSx SINE Alu -8 304 1 364 120 82 104 chr1 168699891 168700009 -73964344 + Zaphod DNA AcHobo 760 879 -3152 1813 152 0 30 chr1 168700009 168700305 -73964048 - AluJb SINE Alu -25 287 1 364 120 82 104 chr1 168700305 168700337 -73964016 + Zaphod DNA AcHobo 879 908 -3123 2363 89 0 22 chr1 168700337 168700650 -73963703 - AluSx SINE Alu -6 306 1 364 120 82 104 chr1 168700650 168700681 -73963672 + Zaphod DNA AcHobo 908 938 -3093 1994 133 0 0 chr1 168700702 168701014 -73963339 - AluSx SINE Alu 0 312 1 1510 220 62 24 chr1 168701045 168701464 -73962889 + Zaphod DNA AcHobo 3596 4030 -1 201 268 144 52 chr1 168701570 168701667 -73962686 + L2 LINE L2 3200 3305 -8 1685 178 20 17 chr1 168702651 168702949 -73961404 - AluJo SINE Alu -13 299 1 2166 99 0 7 chr1 168703137 168703461 -73960892 - AluSx SINE Alu 0 322 1 28 61 0 0 chr1 168703465 168703514 -73960839 + AT_rich Low_complexity Low_complexity 1 49 0 2001 121 4 0 chr1 168703981 168704254 -73960099 + AluSx SINE Alu 1 274 -38 359 278 142 12 chr1 168704534 168704696 -73959657 - L1ME LINE L1 -406 5747 5565 887 180 12 35 chr1 168704724 168704896 -73959457 + FRAM SINE Alu 1 165 -11 879 266 78 49 chr1 168704896 168705253 -73959100 + MLT1G LTR MaLR 9 419 -176 905 137 8 0 chr1 168705253 168705384 -73958969 + FLAM_C SINE Alu 2 133 0 879 266 78 49 chr1 168705384 168705555 -73958798 + MLT1G LTR MaLR 419 584 -11 514 263 134 27 chr1 168705557 168706030 -73958323 - L1ME LINE L1 -569 5578 4946 272 310 35 0 chr1 168706098 168706211 -73958142 - L1ME LINE L1 -1299 4830 4714 733 295 100 17 chr1 168706239 168706310 -73958043 - L1ME LINE L1 -1606 4523 4459 1998 118 7 20 chr1 168706310 168706615 -73957738 + AluSg SINE Alu 1 301 -9 733 295 100 17 chr1 168706615 168707071 -73957282 - L1ME LINE L1 -1670 4459 3940 731 246 30 24 chr1 168707118 168707159 -73957194 + MLT1F LTR MaLR 1 40 -502 2466 75 7 0 chr1 168707159 168707467 -73956886 - AluY SINE Alu -1 310 1 731 246 30 24 chr1 168707467 168707592 -73956761 + MLT1F LTR MaLR 40 168 -374 1663 216 11 3 chr1 168707595 168707961 -73956392 + L1M4 LINE L1 4787 5155 -991 2118 127 0 3 chr1 168707970 168708269 -73956084 + AluSq SINE Alu 1 298 -15 2177 120 7 0 chr1 168708286 168708586 -73955767 + AluSq SINE Alu 1 302 -11 2140 134 31 3 chr1 168708593 168708644 -73955709 + L1M4 LINE L1 5257 5305 -879 2032 132 7 0 chr1 168708644 168708977 -73955376 - AluSq SINE Alu 0 313 1 2140 134 31 3 chr1 168708977 168709275 -73955078 + L1M4 LINE L1 5305 5616 -568 381 263 7 73 chr1 168709293 168709430 -73954923 - L1ME LINE L1 -5455 664 537 234 0 0 0 chr1 168709435 168709461 -73954892 + (TTG)n Simple_repeat Simple_repeat 2 27 0 267 31 0 0 chr1 168709814 168709846 -73954507 + (TG)n Simple_repeat Simple_repeat 2 33 0 969 167 31 7 chr1 168709866 168710187 -73954166 + MER93b LTR ERV1 12 372 -1 269 50 0 25 chr1 168710191 168710231 -73954122 + (TG)n Simple_repeat Simple_repeat 2 40 0 559 236 9 0 chr1 168710876 168710986 -73953367 + MER81 DNA DNA 1 111 -3 1815 172 151 18 chr1 168711183 168711619 -73952734 - LTR54B LTR ERV1 -4 494 1 360 231 203 44 chr1 168711964 168712121 -73952232 - MER5A DNA MER1_type 0 189 4 259 322 0 22 chr1 168712885 168712975 -73951378 - MIR SINE MIR -102 106 19 2294 115 0 0 chr1 168713099 168713404 -73950949 + AluSp SINE Alu 1 305 -8 2461 60 0 7 chr1 168714395 168714696 -73949657 - AluY SINE Alu -12 299 1 2071 117 7 0 chr1 168715326 168715617 -73948736 + AluSq SINE Alu 1 293 -20 321 26 0 0 chr1 168715617 168715655 -73948698 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 879 73 0 0 chr1 168716196 168716306 -73948047 - AluSq/x SINE Alu -202 111 2 311 286 93 14 chr1 168716703 168716843 -73947510 - MIR SINE MIR -8 254 104 1645 192 7 3 chr1 168716891 168717188 -73947165 - AluJo SINE Alu -12 300 3 180 0 0 0 chr1 168717199 168717219 -73947134 + (T)n Simple_repeat Simple_repeat 1 20 0 32 0 0 43 chr1 168717986 168718005 -73946348 + AT_rich Low_complexity Low_complexity 1 19 -26 1352 191 40 0 chr1 168718005 168718283 -73946070 + AluSx SINE Alu 1 289 -23 32 0 0 43 chr1 168718283 168718310 -73946043 + AT_rich Low_complexity Low_complexity 19 45 0 653 245 73 0 chr1 168718522 168718673 -73945680 - MLT1H LTR MaLR -9 533 372 1402 95 17 48 chr1 168719330 168719561 -73944792 + AluY SINE Alu 67 290 -21 1356 212 0 7 chr1 168719597 168719890 -73944463 + AluSx SINE Alu 2 292 -20 798 165 8 0 chr1 168720055 168720188 -73944165 + AluSp/q SINE Alu 178 311 -2 209 133 0 0 chr1 168720266 168720296 -73944057 - MER5A DNA MER1_type 0 189 160 939 183 0 37 chr1 168720296 168720487 -73943866 - AluJo SINE Alu -115 197 14 21 0 0 0 chr1 168720637 168720658 -73943695 + AT_rich Low_complexity Low_complexity 1 21 0 882 215 21 42 chr1 168720751 168720988 -73943365 - MLT1H LTR MaLR -249 300 69 322 257 243 53 chr1 168721570 168721722 -73942631 + MER5A DNA MER1_type 9 189 0 1856 167 151 18 chr1 168722067 168722503 -73941850 + LTR54B LTR ERV1 1 494 -4 457 273 9 0 chr1 168722700 168722810 -73941543 - MER81 DNA DNA -3 111 1 1848 118 0 11 chr1 168723191 168723461 -73940892 - AluSq SINE Alu -4 309 43 1800 153 18 0 chr1 168723579 168723853 -73940500 - AluSx SINE Alu -33 279 1 897 248 122 107 chr1 168724628 168725082 -73939271 + L2 LINE L2 2622 3101 -212 1808 157 0 20 chr1 168725082 168725381 -73938972 + AluSx SINE Alu 2 294 -18 897 248 122 107 chr1 168725381 168725597 -73938756 + L2 LINE L2 3101 3312 -1 223 191 117 43 chr1 168726261 168726355 -73937998 - MIR SINE MIR 0 262 162 399 267 121 42 chr1 168726452 168726617 -73937736 + MIR SINE MIR 29 206 -56 2006 154 0 0 chr1 168727644 168727942 -73936411 + AluSx SINE Alu 1 298 -14 716 101 55 46 chr1 168728303 168728412 -73935941 + FRAM SINE Alu 49 158 -18 529 293 139 35 chr1 168728499 168728960 -73935393 + L1M4 LINE L1 4302 4810 -1336 270 0 0 0 chr1 168728976 168729006 -73935347 + (TA)n Simple_repeat Simple_repeat 2 31 0 234 234 104 0 chr1 168729192 168729269 -73935084 + L1P2 LINE L1 5742 5826 -328 2161 128 0 0 chr1 168729332 168729628 -73934725 + AluSx SINE Alu 1 296 -16 1641 121 143 8 chr1 168729906 168730171 -73934182 + AluSg1 SINE Alu 1 301 -8 2046 85 4 0 chr1 168731303 168731573 -73932780 + AluY SINE Alu 37 307 -4 2013 127 0 0 chr1 168731974 168732301 -73932052 - AluSx SINE Alu 0 327 1 216 0 0 0 chr1 168732757 168732781 -73931572 + (TA)n Simple_repeat Simple_repeat 1 24 0 1034 238 8 25 chr1 168732861 168733096 -73931257 - MIR SINE MIR -30 232 2 1648 126 165 3 chr1 168733096 168733405 -73930948 - MER46B DNA MER2_type 0 236 3 329 271 34 126 chr1 168734674 168734999 -73929354 - L1M2 LINE L1 -5733 1116 822 339 25 0 0 chr1 168735030 168735070 -73929283 + (CGG)n Simple_repeat Simple_repeat 2 41 0 353 287 193 59 chr1 168735134 168735612 -73928741 - L1M2 LINE L1 -5420 1429 888 1761 147 63 0 chr1 168736327 168736613 -73927740 - AluSx SINE Alu 0 312 9 2304 76 7 3 chr1 168736631 168736932 -73927421 - AluSg SINE Alu -8 302 1 581 278 133 0 chr1 168737358 168737531 -73926822 + MIR3 SINE MIR 7 202 -6 370 165 165 58 chr1 168737695 168737798 -73926555 - L2 LINE L2 -1 3312 3199 693 236 7 0 chr1 168737853 168737997 -73926356 + MIR SINE MIR 17 161 -101 2374 78 17 0 chr1 168738096 168738392 -73925961 + AluSg SINE Alu 1 301 -9 234 304 0 14 chr1 168738394 168738463 -73925890 - L2 LINE L2 -838 2476 2409 1273 128 9 70 chr1 168738634 168738712 -73925641 - AluSx SINE Alu -99 213 132 1993 82 33 62 chr1 168738712 168739018 -73925335 - AluSp SINE Alu -16 297 1 1273 128 9 70 chr1 168739018 168739166 -73925187 - AluSx SINE Alu -180 132 1 714 186 47 0 chr1 168739166 168739295 -73925058 + Tigger7 DNA MER2_type 2453 2587 0 183 231 92 31 chr1 168739934 168739999 -73924354 + MIR SINE MIR 84 152 -110 2453 70 0 7 chr1 168740236 168740535 -73923818 - AluY SINE Alu -14 297 1 309 87 0 0 chr1 168740697 168740743 -73923610 - Alu SINE Alu 0 308 263 1159 194 84 21 chr1 168740743 168741027 -73923326 + AluJo SINE Alu 1 302 0 630 167 148 19 chr1 168741065 168741275 -73923078 + Charlie5 DNA MER1_type 2330 2566 -46 2332 102 3 0 chr1 168741275 168741580 -73922773 - AluSp SINE Alu -7 306 1 2342 96 0 0 chr1 168741593 168741894 -73922459 - AluSp SINE Alu -12 301 1 283 300 50 0 chr1 168741936 168742016 -73922337 + L2 LINE L2 3198 3281 -32 2064 143 77 6 chr1 168742049 168742399 -73921954 + THE1C LTR MaLR 1 375 0 584 121 88 0 chr1 168742537 168742628 -73921725 - AluSx SINE Alu -12 297 199 * 749 156 18 0 chr1 168742621 168742730 -73921623 - AluSx SINE Alu -200 112 2 1444 207 23 20 chr1 168742806 168743110 -73921243 - AluJo SINE Alu -7 305 1 22 0 0 0 chr1 168743412 168743434 -73920919 + AT_rich Low_complexity Low_complexity 1 22 0 2123 107 10 10 chr1 168743462 168743772 -73920581 - AluY SINE Alu 0 311 2 1985 149 16 3 chr1 168743817 168744125 -73920228 - AluSx SINE Alu 0 312 1 1499 163 57 11 chr1 168744188 168744471 -73919882 + AluJo SINE Alu 3 298 -14 253 364 45 0 chr1 168744658 168744790 -73919563 - MIR3 SINE MIR -4 204 67 1610 210 58 51 chr1 168744790 168745308 -73919045 - MER39 LTR ERV1 0 707 6 180 413 12 0 chr1 168745466 168745546 -73918807 - MIR SINE MIR -180 82 2 349 270 164 19 chr1 168745562 168745721 -73918632 - MIR SINE MIR -17 245 64 2535 111 31 0 chr1 168745841 168746192 -73918161 + L1PA16 LINE L1 5799 6160 -6 201 244 0 0 chr1 168746518 168746563 -73917790 + MIR SINE MIR 17 61 -201 611 273 41 0 chr1 168746638 168746810 -73917543 + MIR SINE MIR 84 262 0 27 0 0 0 chr1 168746868 168746895 -73917458 + AT_rich Low_complexity Low_complexity 1 27 0 388 283 151 33 chr1 168747796 168748008 -73916345 - L1MC4a LINE L1 -1950 5858 5622 436 88 0 0 chr1 168748166 168748223 -73916130 + Alu SINE Alu 234 290 -21 526 230 42 42 chr1 168748223 168748388 -73915965 - L3 LINE CR1 -198 1379 1215 2258 116 0 3 chr1 168748513 168748824 -73915529 - AluSg SINE Alu 0 310 1 208 318 30 0 chr1 168749036 168749102 -73915251 + MIR3 SINE MIR 133 200 -8 411 211 156 23 chr1 168749357 168749485 -73914868 - MLT1H LTR MaLR 0 549 405 2672 110 34 18 chr1 168749592 168749974 -73914379 + MLT1B LTR MaLR 3 390 0 1956 140 0 7 chr1 168750040 168750326 -73914027 - AluSx SINE Alu -27 285 2 395 225 130 65 chr1 168750326 168750488 -73913865 - L2 LINE L2 -6 3307 3132 241 143 29 100 chr1 168751132 168751202 -73913151 - MLT1K LTR MaLR -12 576 512 885 168 108 0 chr1 168751255 168751422 -73912931 + MLT1B LTR MaLR 5 189 -201 323 198 163 0 chr1 168751428 168751514 -73912839 + L1ME3A LINE L1 6022 6121 -49 228 151 0 0 chr1 168751564 168751617 -73912736 + LTR66 LTR ERVL 399 451 -159 1012 206 64 9 chr1 168751623 168751842 -73912511 + MER8 DNA MER2_type 6 236 -3 267 125 0 0 chr1 168751920 168751960 -73912393 + L1ME3A LINE L1 6124 6163 -7 2032 124 3 10 chr1 168752218 168752509 -73911844 + AluSp SINE Alu 1 289 -24 297 120 0 0 chr1 168752584 168752634 -73911719 - Alu SINE Alu 0 308 259 740 209 19 73 chr1 168752637 168752843 -73911510 + MLT1H LTR MaLR 72 266 -283 835 173 0 8 chr1 168752852 168752985 -73911368 + MLT1B LTR MaLR 6 137 -253 810 203 13 13 chr1 168753003 168753156 -73911197 - FRAM SINE Alu -13 163 11 2234 103 0 16 chr1 168753359 168753670 -73910683 - AluSx SINE Alu -6 306 1 1840 131 35 31 chr1 168753704 168753994 -73910359 - AluSx SINE Alu -21 291 1 2162 120 3 7 chr1 168753996 168754295 -73910058 - AluSx SINE Alu -14 298 1 330 164 34 197 chr1 168754466 168754585 -73909768 + MER112 DNA MER1_type 4 141 -119 1852 172 0 0 chr1 168754585 168754881 -73909472 + AluJo SINE Alu 1 296 -16 330 164 34 197 chr1 168754881 168754905 -73909448 + MER112 DNA MER1_type 141 167 -93 1807 151 30 47 chr1 168754905 168755079 -73909274 - AluJo SINE Alu -7 295 127 2108 102 0 48 chr1 168755079 168755257 -73909096 - AluSx SINE Alu -12 300 142 2314 88 3 0 chr1 168755257 168755562 -73908791 - AluSp SINE Alu -7 306 1 2108 102 0 48 chr1 168755562 168755698 -73908655 - AluSx SINE Alu -170 142 1 1807 151 30 47 chr1 168755698 168755822 -73908531 - AluJo SINE Alu -175 127 2 330 164 34 197 chr1 168755822 168755885 -73908468 + MER112 DNA MER1_type 167 177 -83 2398 89 3 3 chr1 168756983 168757287 -73907066 - AluSx SINE Alu -8 304 1 2450 193 38 2 chr1 168757386 168757832 -73906521 + MSTD-int LTR MaLR 1274 1735 0 2263 150 103 0 chr1 168757832 168758191 -73906162 + MSTD LTR MaLR 1 396 0 1689 176 22 60 chr1 168758215 168758507 -73905846 + MLT1A1 LTR MaLR 10 312 -53 2215 135 0 0 chr1 168758507 168758818 -73905535 - AluSx SINE Alu -1 311 1 207 0 0 0 chr1 168758824 168758847 -73905506 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2397 56 0 10 chr1 168758851 168759139 -73905214 - AluY SINE Alu -26 285 1 1689 176 22 60 chr1 168759139 168759204 -73905149 + MLT1A1 LTR MaLR 320 365 0 2105 132 0 10 chr1 168759661 168759964 -73904389 + AluSx SINE Alu 1 300 -12 1951 142 3 3 chr1 168760030 168760363 -73903990 + AluJb SINE Alu 1 333 0 485 265 40 13 chr1 168760478 168760629 -73903724 + MLT1B LTR MaLR 92 246 -303 2188 105 10 3 chr1 168760956 168761261 -73903092 - AluSx SINE Alu 0 312 6 191 175 48 48 chr1 168761308 168761371 -73902982 + MIR SINE MIR 82 144 -64 356 313 62 0 chr1 168761475 168761603 -73902750 - Charlie2 DNA MER1_type -2725 137 2 2117 124 3 0 chr1 168761608 168761899 -73902454 - AluSp SINE Alu -21 292 1 214 148 37 0 chr1 168762067 168762121 -73902232 + (TA)n Simple_repeat Simple_repeat 1 56 0 1107 113 8 166 chr1 168762146 168762411 -73901942 + AluJb SINE Alu 86 308 -4 682 125 0 23 chr1 168762418 168762546 -73901807 + (GGAA)n Simple_repeat Simple_repeat 4 128 0 1827 154 11 7 chr1 168762604 168762890 -73901463 + AluJo SINE Alu 1 287 -25 2198 83 45 0 chr1 168763101 168763390 -73900963 - AluSp SINE Alu -11 302 1 412 279 89 22 chr1 168763429 168763608 -73900745 - L2 LINE L2 -3 3310 3120 2227 112 7 0 chr1 168763892 168764195 -73900158 + AluSq SINE Alu 1 305 -8 1263 129 0 0 chr1 168764209 168764380 -73899973 + AluSg/x SINE Alu 132 302 -10 2083 117 0 7 chr1 168764629 168764911 -73899442 - AluSx SINE Alu -26 286 7 2280 80 0 38 chr1 168764946 168765260 -73899093 - AluY SINE Alu -9 302 1 435 19 0 0 chr1 168765266 168765318 -73899035 + (TG)n Simple_repeat Simple_repeat 1 52 0 1930 129 0 4 chr1 168765320 168765598 -73898755 - AluSx SINE Alu -35 277 1 1037 185 51 37 chr1 168765598 168765814 -73898539 - L1MC1 LINE L1 -22 6311 6093 186 43 0 0 chr1 168766438 168766461 -73897892 + (A)n Simple_repeat Simple_repeat 1 23 0 1992 174 3 0 chr1 168766482 168766787 -73897566 + AluSx SINE Alu 1 306 -6 794 174 0 0 chr1 168766794 168766909 -73897444 - FLAM_A SINE Alu -18 115 1 200 362 117 27 chr1 168767181 168767369 -73896984 + L2 LINE L2 2554 2758 -556 394 230 0 0 chr1 168767371 168767445 -73896908 + MLT1L LTR MaLR 6 79 -536 2334 96 0 3 chr1 168767481 168767783 -73896570 + AluSx SINE Alu 1 301 -11 2254 103 0 10 chr1 168767784 168768094 -73896259 + AluSc SINE Alu 1 307 -2 2244 113 0 0 chr1 168768460 168768753 -73895600 - AluSx SINE Alu -13 299 7 2306 101 0 0 chr1 168768816 168769124 -73895229 - AluSx SINE Alu -4 308 1 2421 198 94 86 chr1 168769551 168770169 -73894184 + L1M4b LINE L1 918 1530 -5429 2228 113 3 0 chr1 168770169 168770462 -73893891 + AluSx SINE Alu 1 294 -18 2120 124 3 0 chr1 168770469 168770759 -73893594 + AluY SINE Alu 7 297 -14 2421 198 94 86 chr1 168770759 168771191 -73893162 + L1M4b LINE L1 1535 1979 -4980 1864 163 0 0 chr1 168771191 168771485 -73892868 + AluSx SINE Alu 1 294 -18 2421 198 94 86 chr1 168771485 168771765 -73892588 + L1M4b LINE L1 1979 2255 -4704 1945 117 4 0 chr1 168771921 168772194 -73892159 - AluSx SINE Alu -38 274 1 23 0 0 0 chr1 168772309 168772332 -73892021 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 168772695 168772718 -73891635 + AT_rich Low_complexity Low_complexity 1 23 0 214 312 0 0 chr1 168773466 168773543 -73890810 + CT-rich Low_complexity Low_complexity 1 77 0 221 95 0 48 chr1 168773559 168773601 -73890752 + (TCC)n Simple_repeat Simple_repeat 3 42 0 351 295 144 22 chr1 168774386 168774525 -73889828 - MIR3 SINE MIR -30 178 23 192 40 0 0 chr1 168774774 168774799 -73889554 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1118 137 128 0 chr1 168774799 168775010 -73889343 - L1PB4 LINE L1 -13 6143 5906 882 124 16 0 chr1 168775013 168775142 -73889211 + AluJb SINE Alu 170 300 -12 1004 122 0 6 chr1 168775473 168775637 -73888716 + L1PB4 LINE L1 5744 5906 -250 1942 198 123 68 chr1 168775640 168776060 -73888293 - L2 LINE L2 -1878 1436 974 2044 117 0 61 chr1 168776060 168776386 -73887967 + AluSc SINE Alu 1 306 -3 1942 198 123 68 chr1 168776386 168776542 -73887811 - L2 LINE L2 -2340 974 828 468 315 35 44 chr1 168776563 168776766 -73887587 - MIR SINE MIR -57 205 5 22 35 0 0 chr1 168777392 168777421 -73886932 + AT_rich Low_complexity Low_complexity 1 29 0 243 310 44 35 chr1 168777792 168777905 -73886448 + L2 LINE L2 2705 2818 -496 1778 179 46 102 chr1 168778131 168778611 -73885742 - MER21B LTR ERV1 -410 453 1 2333 100 0 10 chr1 168779179 168779490 -73884863 - AluSq SINE Alu -5 308 1 2150 133 0 7 chr1 168781163 168781472 -73882881 - AluSx SINE Alu -5 307 1 1753 79 8 21 chr1 168781493 168781734 -73882619 - AluY SINE Alu -7 304 67 665 228 97 4 chr1 168782354 168782541 -73881812 + MLT1F LTR MaLR 372 533 -9 3841 158 17 37 chr1 168782615 168782772 -73881581 + L1MB3 LINE L1 5280 5439 -744 2098 141 0 0 chr1 168782772 168783077 -73881276 + AluSx SINE Alu 1 305 -7 3841 158 17 37 chr1 168783077 168783735 -73880618 + L1MB3 LINE L1 5439 6079 -104 524 125 0 0 chr1 168783782 168783854 -73880499 + AluSq SINE Alu 9 80 -233 659 83 9 37 chr1 168783854 168783962 -73880391 - MER68 LTR ERV1 -457 105 1 1760 80 0 36 chr1 168784314 168784564 -73879789 + AluSq SINE Alu 72 312 -1 438 103 0 0 chr1 168784566 168784634 -73879719 + L1MB3 LINE L1 6109 6176 -7 417 244 142 22 chr1 168784655 168784929 -73879424 + L1MEd LINE L1 895 1201 -4918 339 279 127 0 chr1 168784966 168785124 -73879229 + L1MEd LINE L1 1243 1420 -4709 204 67 0 0 chr1 168785323 168785353 -73879000 + (A)n Simple_repeat Simple_repeat 1 30 0 2136 131 7 0 chr1 168785353 168785651 -73878702 + AluSq SINE Alu 1 300 -13 571 139 0 0 chr1 168785660 168785739 -73878614 + AluJ/FLAM SINE Alu 2 80 -232 375 277 150 28 chr1 168786352 168786565 -73877788 - L1MC4a LINE L1 -1944 5864 5626 316 280 46 96 chr1 168786654 168786762 -73877591 - L1MC4a LINE L1 -1310 4836 4743 896 263 15 15 chr1 168786762 168787021 -73877332 + MIR SINE MIR 4 262 0 316 280 46 96 chr1 168787021 168787130 -73877223 - L1MC4a LINE L1 -1403 4743 4630 608 309 40 29 chr1 168787306 168787584 -73876769 - MLT1I LTR MaLR -119 290 10 2471 86 0 0 chr1 168787584 168787886 -73876467 + AluSg SINE Alu 1 302 -8 2123 124 0 3 chr1 168788148 168788446 -73875907 - AluSx SINE Alu -15 297 1 2165 102 0 7 chr1 168788584 168788892 -73875461 + AluSx SINE Alu 2 307 0 762 230 20 36 chr1 168788913 168789109 -73875244 - MIR SINE MIR -68 194 2 2994 168 66 8 chr1 168791698 168792228 -73872125 + MER68 LTR ERV1 1 561 -1 2216 133 0 0 chr1 168792562 168792864 -73871489 + AluSx SINE Alu 1 302 -10 1905 163 7 3 chr1 168792873 168793174 -73871179 + AluJo SINE Alu 1 302 -10 379 261 101 0 chr1 168793241 168793360 -73870993 + MIR SINE MIR 124 254 -8 1881 89 0 4 chr1 168793757 168794004 -73870349 + AluSx SINE Alu 2 247 -65 2235 125 0 0 chr1 168794239 168794551 -73869802 - AluSq SINE Alu -1 312 1 1441 173 52 4 chr1 168795648 168795897 -73868456 + AluJo SINE Alu 1 261 -51 228 143 61 0 chr1 168795897 168795946 -73868407 + AluJ/FRAM SINE Alu 231 282 -20 23 0 0 0 chr1 168795987 168796010 -73868343 + AT_rich Low_complexity Low_complexity 1 23 0 1742 115 96 19 chr1 168796456 168796564 -73867789 + AluSg SINE Alu 2 100 -210 2289 106 3 0 chr1 168796564 168796875 -73867478 + AluSx SINE Alu 1 312 0 1742 115 96 19 chr1 168796875 168797036 -73867317 + AluSg SINE Alu 100 292 -18 1342 219 74 29 chr1 168797091 168797404 -73866949 + MSTD LTR MaLR 1 336 -60 1361 187 82 11 chr1 168797404 168797697 -73866656 - AluJo SINE Alu 0 312 1 1342 219 74 29 chr1 168797697 168797761 -73866592 + MSTD LTR MaLR 336 396 0 2361 80 0 0 chr1 168797893 168798192 -73866161 - AluY SINE Alu -12 299 1 307 248 107 25 chr1 168798707 168798828 -73865525 + L1MD2 LINE L1 6011 6141 -218 1081 219 122 13 chr1 168798961 168799272 -73865081 - MER2 DNA MER2_type 0 345 1 576 202 36 12 chr1 168799275 168799443 -73864910 - Charlie2 DNA MER1_type -152 2710 2539 1611 144 8 4 chr1 168799451 168799715 -73864638 - AluSx SINE Alu -1 311 47 4948 132 53 57 chr1 168799748 168800657 -73863696 - L1MA4A LINE L1 -7 6296 5392 2384 98 0 0 chr1 168800657 168800963 -73863390 - AluSg SINE Alu -4 306 1 4948 132 53 57 chr1 168800963 168801221 -73863132 - L1MA4A LINE L1 -911 5392 5135 1795 135 0 60 chr1 168801376 168801695 -73862658 - AluJb SINE Alu -12 300 1 300 367 25 46 chr1 168801768 168802005 -73862348 + L2 LINE L2 2978 3209 -63 2049 113 3 51 chr1 168802595 168802906 -73861447 - AluSx SINE Alu -16 296 1 2124 146 0 13 chr1 168803099 168803415 -73860938 - AluSx SINE Alu 0 312 1 2301 117 0 0 chr1 168804535 168804843 -73859510 + AluSx SINE Alu 1 308 -4 1687 103 51 38 chr1 168805052 168805344 -73859009 - L1MA2 LINE L1 -6 6298 6003 2196 111 3 29 chr1 168805388 168805703 -73858650 + AluSx SINE Alu 1 307 -5 740 186 0 0 chr1 168806360 168806478 -73857875 + FLAM_C SINE Alu 1 118 -25 1190 94 0 6 chr1 168806599 168806782 -73857571 - AluSx SINE Alu 0 323 142 573 163 0 0 chr1 168806787 168806873 -73857480 - AluSx SINE Alu -227 86 1 315 161 0 0 chr1 168806960 168807016 -73857337 + (TA)n Simple_repeat Simple_repeat 2 57 0 1429 82 0 6 chr1 168807025 168807207 -73857146 - AluSp SINE Alu -128 185 5 2276 101 0 3 chr1 168807232 168807530 -73856823 - AluSc SINE Alu -12 297 1 4498 147 47 59 chr1 168807985 168808878 -73855475 - L1MA4A LINE L1 -34 6269 5399 2349 101 0 0 chr1 168808878 168809184 -73855169 - AluSg SINE Alu -4 306 1 4498 147 47 59 chr1 168809184 168809582 -73854771 - L1MA4A LINE L1 -904 5399 4998 2244 103 0 3 chr1 168809584 168809884 -73854469 + AluSq SINE Alu 1 299 -14 221 315 19 28 chr1 168810066 168810174 -73854179 + L2 LINE L2 2746 2852 -462 327 351 0 0 chr1 168810385 168810479 -73853874 + L2 LINE L2 3206 3299 -14 1753 155 32 15 chr1 168810527 168810869 -73853484 + Tigger7 DNA MER2_type 2139 2486 -1 3098 195 65 31 chr1 168811523 168811908 -73852445 - L1MD2 LINE L1 -228 6131 5760 2276 117 0 0 chr1 168811908 168812215 -73852138 - AluSx SINE Alu -5 307 1 3098 195 65 31 chr1 168812215 168812629 -73851724 - L1MD2 LINE L1 -599 5760 5305 230 294 24 47 chr1 168812769 168812854 -73851499 + MIR SINE MIR 24 106 -156 2048 119 0 35 chr1 168813055 168813367 -73850986 - AluSx SINE Alu -1 311 11 1758 143 137 31 chr1 168813562 168813920 -73850433 - MSTD LTR MaLR 0 396 1 1601 196 28 3 chr1 168813959 168814244 -73850109 - AluJb SINE Alu -20 292 1 715 226 0 0 chr1 168814311 168814444 -73849909 - FLAM_A SINE Alu 0 133 1 262 246 0 18 chr1 168814590 168814647 -73849706 + MER5A DNA MER1_type 14 69 -120 1084 138 25 0 chr1 168814647 168814807 -73849546 + AluJo SINE Alu 1 164 -148 232 105 0 0 chr1 168814807 168814845 -73849508 - L1ME LINE L1 -718 5446 5409 321 264 22 0 chr1 168814845 168814936 -73849417 + MER20 DNA MER1_type 127 219 0 22 0 0 0 chr1 168815196 168815218 -73849135 + AT_rich Low_complexity Low_complexity 1 22 0 775 176 0 8 chr1 168815318 168815449 -73848904 - FLAM_A SINE Alu -3 130 1 2054 144 0 0 chr1 168815551 168815850 -73848503 - AluSx SINE Alu -13 299 1 532 234 102 0 chr1 168816525 168816653 -73847700 - MIR SINE MIR -120 142 2 23 0 0 0 chr1 168816690 168816713 -73847640 + AT_rich Low_complexity Low_complexity 1 23 0 640 186 35 47 chr1 168816815 168816987 -73847366 - L1 LINE L1 -2272 3874 3705 237 282 153 24 chr1 168817266 168817390 -73846963 + MIR SINE MIR 123 262 0 1061 161 0 0 chr1 168817813 168817975 -73846378 + AluJb SINE Alu 137 298 -14 1173 143 59 67 chr1 168818070 168818175 -73846178 - MER46A DNA MER2_type -2495 236 132 2044 111 21 7 chr1 168818175 168818464 -73845889 - AluSx SINE Alu -17 295 3 1173 143 59 67 chr1 168818464 168818596 -73845757 - MER46A DNA MER2_type -2599 132 1 1624 166 3 28 chr1 168818749 168819074 -73845279 - AluSx SINE Alu 0 318 1 2222 102 3 13 chr1 168819914 168820219 -73844134 - AluSx SINE Alu -10 302 1 341 306 106 35 chr1 168820532 168820731 -73843622 + MIR SINE MIR 2 214 -48 375 351 69 47 chr1 168821514 168821890 -73842463 - L2 LINE L2 -692 2622 2233 1310 226 108 40 chr1 168821890 168822363 -73841990 + MLT1D LTR MaLR 1 505 0 375 351 69 47 chr1 168822363 168822450 -73841903 - L2 LINE L2 -1081 2233 2149 198 171 0 0 chr1 168823087 168823128 -73841225 + (CA)n Simple_repeat Simple_repeat 2 42 0 428 196 0 21 chr1 168823803 168823900 -73840453 + MER106B DNA MER1_type 57 151 -908 214 167 42 0 chr1 168823909 168823957 -73840396 + (TTAAA)n Simple_repeat Simple_repeat 3 52 0 14538 126 45 24 chr1 168824476 168825430 -73838923 - Tigger1 DNA MER2_type -1 2417 1485 1608 150 42 42 chr1 168825430 168825717 -73838636 - AluJo SINE Alu -25 287 1 14538 126 45 24 chr1 168825717 168826734 -73837619 - Tigger1 DNA MER2_type -933 1485 491 2366 114 0 0 chr1 168826734 168827042 -73837311 - AluSg SINE Alu 0 310 3 14538 126 45 24 chr1 168827042 168827323 -73837030 - Tigger1 DNA MER2_type -1927 491 109 2051 147 0 6 chr1 168827323 168827635 -73836718 + AluJb SINE Alu 1 310 -2 14538 126 45 24 chr1 168827635 168827746 -73836607 - Tigger1 DNA MER2_type -2309 109 2 4414 123 93 9 chr1 168827821 168828582 -73835771 - L1PB4 LINE L1 -10 6146 5322 479 200 0 36 chr1 168828582 168828692 -73835661 - AluJb SINE Alu -12 300 195 1183 155 48 44 chr1 168828872 168829124 -73835229 - THE1C LTR MaLR -122 253 1 760 158 0 0 chr1 168829124 168829243 -73835110 + Tigger4(Zombi) DNA MER2_type 2613 2731 0 718 327 84 49 chr1 168829256 168829555 -73834798 + L2 LINE L2 2404 2691 -581 1668 93 0 5 chr1 168829555 168829770 -73834583 + AluSg/x SINE Alu 86 299 -13 718 327 84 49 chr1 168829770 168830075 -73834278 + L2 LINE L2 2691 3034 -238 719 136 114 53 chr1 168830106 168830334 -73834019 + Charlie1 DNA MER1_type 2474 2715 -46 432 221 137 6 chr1 168830336 168830460 -73833893 - L1MB3 LINE L1 -2 6181 6054 1011 176 6 0 chr1 168830467 168830649 -73833704 - L1MB3 LINE L1 -234 5940 5758 349 153 0 0 chr1 168831097 168831156 -73833197 + L2 LINE L2 3255 3313 0 2433 63 0 10 chr1 168831186 168831487 -73832866 - AluY SINE Alu -13 298 1 223 226 0 32 chr1 168831546 168831608 -73832745 + L3 LINE CR1 1499 1558 -19 1154 106 12 12 chr1 168831643 168831813 -73832540 + AluY SINE Alu 4 173 -138 2257 88 0 3 chr1 168831949 168832270 -73832083 + AluSg SINE Alu 1 320 0 1558 202 53 0 chr1 168834639 168834807 -73829546 - AluJb SINE Alu -15 297 107 1899 114 103 0 chr1 168834807 168835080 -73829273 - AluSx SINE Alu -8 304 4 1558 202 53 0 chr1 168835080 168835193 -73829160 - AluJb SINE Alu -205 107 1 1506 233 113 41 chr1 168835313 168835964 -73828389 - L2 LINE L2 -1 3312 2584 2072 131 27 3 chr1 168835964 168836292 -73828061 - MER1B DNA MER1_type 0 337 2 1506 233 113 41 chr1 168836292 168836474 -73827879 - L2 LINE L2 -729 2584 2416 1983 89 11 0 chr1 168836475 168836746 -73827607 - LTR12 LTR ERV1 -64 650 377 374 210 30 20 chr1 168836747 168836847 -73827506 - LTR30 LTR ERV1 -80 642 542 1910 169 11 43 chr1 168836851 168837288 -73827065 - pTR5 LTR ERV1 -1273 1165 743 513 244 30 0 chr1 168837288 168837419 -73826934 - L2 LINE L2 -844 2470 2336 785 138 0 0 chr1 168837546 168837662 -73826691 + FLAM_C SINE Alu 1 116 -17 24 0 0 0 chr1 168838499 168838523 -73825830 + AT_rich Low_complexity Low_complexity 1 24 0 1112 136 6 18 chr1 168839012 168839181 -73825172 - AluSx SINE Alu -12 300 134 6606 107 18 51 chr1 168839181 168841164 -73823189 - SVA Other Other -551 1386 433 6056 77 19 55 chr1 168841164 168842125 -73822228 - SVA Other Other -28 1358 433 5749 79 21 54 chr1 168842269 168843153 -73821200 - SVA Other Other -520 866 12 1001 119 7 14 chr1 168843450 168843593 -73820760 - AluSx SINE Alu -170 142 1 1545 133 98 29 chr1 168843872 168844188 -73820165 + MER44D DNA MER2_type 1 608 -1 473 323 94 28 chr1 168844188 168844626 -73819727 - L2 LINE L2 -243 3029 2534 2156 118 0 0 chr1 168844701 168844981 -73819372 + AluSg SINE Alu 1 280 -30 2368 73 0 14 chr1 168845016 168845346 -73819007 + AluSq SINE Alu 1 326 0 2352 107 0 10 chr1 168846614 168846922 -73817431 + AluSx SINE Alu 1 305 -7 351 0 0 0 chr1 168847093 168847132 -73817221 + (CA)n Simple_repeat Simple_repeat 2 40 0 281 100 14 150 chr1 168847618 168847758 -73816595 + AluSq/x SINE Alu 1 121 -182 2324 90 3 3 chr1 168848243 168848542 -73815811 - AluSg SINE Alu -11 299 1 24 67 0 0 chr1 168848849 168848894 -73815459 + AT_rich Low_complexity Low_complexity 1 45 0 1649 189 7 3 chr1 168848959 168849255 -73815098 + AluJb SINE Alu 1 297 -15 2225 98 14 10 chr1 168849897 168850194 -73814159 - AluSx SINE Alu -14 298 1 207 0 0 0 chr1 168850744 168850767 -73813586 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 22 56 0 0 chr1 168851748 168851784 -73812569 + AT_rich Low_complexity Low_complexity 1 36 0 264 276 172 0 chr1 168852240 168852356 -73811997 + MIR SINE MIR 117 252 -10 1005 225 31 0 chr1 168852447 168852669 -73811684 + L1ME3A LINE L1 5619 5847 -323 813 171 124 26 chr1 168852676 168852869 -73811484 + MER58A DNA MER1_type 12 223 -1 698 185 81 35 chr1 168852927 168853100 -73811253 + L1MB7 LINE L1 5985 6165 -19 915 213 34 17 chr1 168853105 168853180 -73811173 + L1ME3A LINE L1 5868 5940 -230 2130 107 23 7 chr1 168853180 168853479 -73810874 + AluSx SINE Alu 1 304 -8 915 213 34 17 chr1 168853479 168853638 -73810715 + L1ME3A LINE L1 5940 6106 -64 1919 124 7 39 chr1 168853827 168854134 -73810219 + AluJo SINE Alu 8 304 -8 189 0 0 0 chr1 168854580 168854601 -73809752 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 1260 135 28 33 chr1 168854624 168854839 -73809514 + MER20 DNA MER1_type 2 215 -4 2386 52 0 18 chr1 168854847 168855133 -73809220 + AluY SINE Alu 1 281 -30 2175 129 0 7 chr1 168855180 168855489 -73808864 + AluSx SINE Alu 1 307 -5 1852 108 12 0 chr1 168856939 168857190 -73807163 - AluSg SINE Alu -56 254 1 2085 94 7 65 chr1 168857222 168857531 -73806822 + AluSx SINE Alu 1 291 -21 2292 124 0 0 chr1 168857552 168857858 -73806495 + AluSx SINE Alu 1 306 -6 209 150 0 50 chr1 168858080 168858120 -73806233 + (CATA)n Simple_repeat Simple_repeat 3 40 0 271 233 70 0 chr1 168858220 168858306 -73806047 + MIR SINE MIR 168 259 -3 901 183 0 0 chr1 168858634 168858776 -73805577 + AluJb SINE Alu 136 277 -35 1774 141 3 20 chr1 168858914 168859213 -73805140 - AluSx SINE Alu -18 294 1 2277 112 0 19 chr1 168859479 168859793 -73804560 + AluSx SINE Alu 1 308 -4 25 83 0 0 chr1 168859793 168859853 -73804500 + AT_rich Low_complexity Low_complexity 1 60 0 561 182 36 0 chr1 168860021 168860131 -73804222 + FLAM_C SINE Alu 2 115 -28 207 0 0 0 chr1 168860139 168860162 -73804191 + (T)n Simple_repeat Simple_repeat 1 23 0 2290 64 40 3 chr1 168860225 168860521 -73803832 + AluY SINE Alu 1 307 -4 2038 127 0 0 chr1 168860922 168861249 -73803104 - AluSx SINE Alu 0 327 1 2078 147 0 0 chr1 168861991 168862290 -73802063 + AluSx SINE Alu 1 299 -13 2366 77 0 10 chr1 168862918 168863215 -73801138 - AluY SINE Alu -17 294 1 2453 81 0 3 chr1 168863369 168863679 -73800674 - AluY SINE Alu -2 309 1 381 172 0 9 chr1 168863777 168863860 -73800493 + AluJ/FLAM SINE Alu 1 62 -240 2311 108 0 19 chr1 168864707 168865021 -73799332 + AluSx SINE Alu 1 308 -4 25 83 0 0 chr1 168865021 168865081 -73799272 + AT_rich Low_complexity Low_complexity 1 60 0 561 182 36 0 chr1 168865249 168865359 -73798994 + FLAM_C SINE Alu 2 115 -28 207 0 0 0 chr1 168865367 168865390 -73798963 + (T)n Simple_repeat Simple_repeat 1 23 0 2403 57 40 3 chr1 168865453 168865751 -73798602 + AluY SINE Alu 1 309 -2 28 0 0 47 chr1 168866929 168866948 -73797405 + AT_rich Low_complexity Low_complexity 1 19 -22 1872 135 39 0 chr1 168866948 168867230 -73797123 + AluSx SINE Alu 1 293 -19 28 0 0 47 chr1 168867230 168867253 -73797100 + AT_rich Low_complexity Low_complexity 19 41 0 556 160 104 40 chr1 168867553 168867678 -73796675 - FLAM_C SINE Alu 0 133 1 1611 154 114 0 chr1 168868135 168868407 -73795946 - AluSx SINE Alu -9 303 1 788 161 0 0 chr1 168869318 168869436 -73794917 - FLAM_C SINE Alu -15 118 1 1203 183 27 105 chr1 168869496 168869830 -73794523 - AluYb8 SINE Alu -10 308 1 23 0 0 0 chr1 168870365 168870388 -73793965 + AT_rich Low_complexity Low_complexity 1 23 0 282 219 7 171 chr1 168870452 168870532 -73793821 - L2 LINE L2 -1 3271 3180 2043 125 16 23 chr1 168870532 168870837 -73793516 + AluSx SINE Alu 1 303 -9 282 219 7 171 chr1 168870837 168870857 -73793496 - L2 LINE L2 -92 3180 3199 2372 110 3 0 chr1 168870857 168871166 -73793187 + AluSp SINE Alu 1 310 -3 282 219 7 171 chr1 168871166 168871210 -73793143 - L2 LINE L2 -72 3200 3150 2166 130 0 3 chr1 168871274 168871575 -73792778 - AluSx SINE Alu -12 300 1 461 210 10 30 chr1 168871940 168872040 -73792313 - Tigger7 DNA MER2_type 0 2487 2390 * 1483 206 0 0 chr1 168872038 168872305 -73792048 - Tigger7 DNA MER2_type -466 267 1 1671 162 12 61 chr1 168873210 168873403 -73790950 - AluSx SINE Alu -1 311 110 2186 104 24 0 chr1 168873403 168873691 -73790662 - AluSx SINE Alu -17 295 1 2389 53 0 20 chr1 168873694 168874017 -73790336 - AluY SINE Alu 0 311 1 1671 162 12 61 chr1 168874017 168874146 -73790207 - AluSx SINE Alu -204 108 1 1635 171 0 92 chr1 168874450 168874611 -73789742 + AluJb SINE Alu 1 118 -194 2318 91 3 0 chr1 168874611 168874908 -73789445 + AluSx SINE Alu 1 298 -14 1635 171 0 92 chr1 168874908 168875074 -73789279 + AluJb SINE Alu 118 298 -14 256 239 128 9 chr1 168875476 168875585 -73788768 + L1ME LINE L1 5682 5803 -318 2215 122 0 3 chr1 168875608 168875903 -73788450 - AluSx SINE Alu -18 294 1 1581 243 96 19 chr1 168875955 168876082 -73788271 + L1ME3A LINE L1 5353 5469 -701 2253 120 0 0 chr1 168876082 168876383 -73787970 + AluSx SINE Alu 4 304 -8 2229 126 0 3 chr1 168876383 168876692 -73787661 + AluSg SINE Alu 1 308 -2 1581 243 96 19 chr1 168876692 168877097 -73787256 + L1ME3A LINE L1 5468 5927 -243 2550 72 0 0 chr1 168877713 168878018 -73786335 - AluY SINE Alu -6 305 1 838 152 25 19 chr1 168883382 168883540 -73780813 + MIR SINE MIR 94 252 -10 412 267 34 56 chr1 168883732 168883893 -73780460 - MIR3 SINE MIR -40 168 9 2684 45 7 0 chr1 168885354 168885663 -73778690 + AluY SINE Alu 1 311 0 2186 106 31 0 chr1 168885994 168886287 -73778066 + AluSx SINE Alu 1 302 -10 2529 58 0 0 chr1 168888468 168888763 -73775590 - AluY SINE Alu -16 295 1 526 264 123 34 chr1 168888764 168889033 -73775320 - MARNA DNA Mariner -194 392 100 2039 115 0 0 chr1 168889286 168889556 -73774797 - AluSx SINE Alu -15 297 28 1913 184 100 32 chr1 168889560 168890187 -73774166 - LTR8A LTR ERV1 -23 668 1 530 279 158 0 chr1 168890187 168890370 -73773983 - MIR SINE MIR -49 213 2 1585 149 21 0 chr1 168890818 168891059 -73773294 - AluSx SINE Alu -7 305 60 863 142 0 0 chr1 168891119 168891239 -73773114 + FLAM_C SINE Alu 1 120 -23 250 85 0 85 chr1 168892206 168892253 -73772100 + tRNA-Gln-CAA tRNA tRNA 33 75 0 1883 156 3 0 chr1 168892780 168893068 -73771285 - AluJb SINE Alu -23 289 1 219 309 163 38 chr1 168894125 168894413 -73769940 - L2 LINE L2 -748 2566 2243 1681 179 7 42 chr1 168894648 168894809 -73769544 - AluJb SINE Alu -16 296 150 2068 90 45 0 chr1 168894809 168895077 -73769276 - AluSq SINE Alu -16 297 18 1681 179 7 42 chr1 168895077 168895222 -73769131 - AluJb SINE Alu -162 150 1 200 273 130 13 chr1 168896031 168896108 -73768245 + L2 LINE L2 3210 3295 -18 241 239 119 30 chr1 168896587 168896654 -73767699 + MIR3 SINE MIR 106 178 -30 1540 81 0 0 chr1 168898327 168898512 -73765841 - AluSq SINE Alu -14 299 115 1973 127 0 0 chr1 168899172 168899439 -73764914 - AluJb SINE Alu -45 267 1 326 228 117 49 chr1 168899817 168899979 -73764374 + MER5A DNA MER1_type 3 186 -3 2626 59 0 0 chr1 168900976 168901280 -73763073 - AluY SINE Alu -7 304 1 2443 74 7 0 chr1 168902221 168902520 -73761833 - AluSg SINE Alu -9 301 1 193 233 0 50 chr1 168902725 168902785 -73761568 - L2 LINE L2 -2 3270 3214 290 287 174 0 chr1 168903026 168903141 -73761212 - MIR SINE MIR -6 256 122 2044 117 37 0 chr1 168903141 168903440 -73760913 + AluSg SINE Alu 1 310 0 2157 96 0 57 chr1 168903961 168904275 -73760078 + AluSg SINE Alu 6 301 -9 189 220 85 51 chr1 168904792 168904851 -73759502 - MIR SINE MIR -118 90 30 199 276 69 0 chr1 168906513 168906571 -73757782 - MIR SINE MIR -77 131 70 2431 106 0 0 chr1 168906954 168907266 -73757087 + AluSx SINE Alu 1 312 0 551 236 47 0 chr1 168907329 168907456 -73756897 + MIR SINE MIR 68 200 -62 2120 76 0 47 chr1 168907792 168908123 -73756230 - AluSx SINE Alu 0 312 1 368 176 0 40 chr1 168908284 168908358 -73755995 - AluS SINE Alu -218 84 14 444 206 69 0 chr1 168908625 168908727 -73755626 + MER5A DNA MER1_type 1 109 -80 1728 137 17 33 chr1 168908754 168909054 -73755299 + AluJo SINE Alu 5 299 -13 2148 120 0 13 chr1 168909193 168909493 -73754860 + AluSx SINE Alu 1 296 -16 185 317 30 30 chr1 168909914 168910015 -73754338 + L2 LINE L2 3166 3266 -47 1247 86 19 0 chr1 168910436 168910598 -73753755 - AluSq SINE Alu -14 299 135 2076 93 48 7 chr1 168910598 168910889 -73753464 - AluSp SINE Alu -10 303 1 232 219 219 9 chr1 168911697 168911802 -73752551 + L2 LINE L2 3143 3269 -3 189 241 51 51 chr1 168912545 168912624 -73751729 + L2 LINE L2 2273 2351 -963 2159 105 10 14 chr1 168912710 168913006 -73751347 - AluSx SINE Alu -17 295 1 2340 107 0 22 chr1 168914292 168914609 -73749744 + AluSx SINE Alu 1 310 -2 764 245 147 16 chr1 168916189 168916495 -73747858 + L1ME4a LINE L1 5657 6002 -119 1851 58 0 5 chr1 168916597 168916820 -73747533 - AluY SINE Alu -8 303 82 458 53 0 0 chr1 168916920 168916977 -73747376 - Alu SINE Alu -252 58 2 1378 185 123 62 chr1 168917022 168917172 -73747181 + MSTD LTR MaLR 1 140 -256 2394 86 23 0 chr1 168917172 168917475 -73746878 + AluSq SINE Alu 1 310 -3 1378 185 123 62 chr1 168917475 168917645 -73746708 + MSTD LTR MaLR 140 351 -45 2174 106 0 3 chr1 168917645 168917956 -73746397 + AluSx SINE Alu 1 310 0 1378 185 123 62 chr1 168917956 168918006 -73746347 + MSTD LTR MaLR 351 396 0 334 227 104 110 chr1 168918264 168918320 -73746033 + LTR41 LTR ERVL 7 62 -711 2430 90 0 3 chr1 168918320 168918631 -73745722 + AluSx SINE Alu 1 310 -2 334 227 104 110 chr1 168918631 168918737 -73745616 + LTR41 LTR ERVL 62 168 -605 2242 113 0 0 chr1 168919258 168919551 -73744802 + AluSg SINE Alu 1 293 -17 2080 140 7 3 chr1 168919929 168920237 -73744116 + AluSx SINE Alu 1 309 -3 2215 128 3 0 chr1 168920363 168920669 -73743684 - AluSx SINE Alu -5 307 1 1901 172 52 14 chr1 168921882 168922231 -73742122 + MLT1A1 LTR MaLR 1 362 -3 1938 97 54 14 chr1 168922565 168922844 -73741509 + AluSq SINE Alu 12 301 -12 21 0 0 0 chr1 168923089 168923110 -73741243 + AT_rich Low_complexity Low_complexity 1 21 0 1831 183 0 6 chr1 168924377 168924688 -73739665 - AluJb SINE Alu -3 309 1 2323 95 3 3 chr1 168924701 168924997 -73739356 - AluSx SINE Alu -16 296 1 1279 250 25 28 chr1 168925159 168925312 -73739041 + L1MC4 LINE L1 6462 6614 -1428 2333 100 3 3 chr1 168925312 168925622 -73738731 - AluSg SINE Alu 0 310 1 1279 250 25 28 chr1 168925622 168925824 -73738529 + L1MC4 LINE L1 6614 6816 -1226 1042 158 0 0 chr1 168925825 168925977 -73738376 + AluSg/x SINE Alu 141 292 -20 1080 246 77 0 chr1 168925996 168926281 -73738072 + L1MC4 LINE L1 6869 7175 -867 1884 156 3 19 chr1 168926283 168926591 -73737762 + AluJb SINE Alu 1 303 -9 1687 144 4 0 chr1 168926673 168926916 -73737437 + AluSx SINE Alu 59 302 -10 308 113 99 14 chr1 168927007 168927078 -73737275 + L1MC4a LINE L1 5318 5394 -2414 1325 255 78 22 chr1 168927087 168927291 -73737062 + L1MC4a LINE L1 5465 5656 -2152 2107 132 15 32 chr1 168927291 168927632 -73736721 - MER1B DNA MER1_type -2 335 1 1325 255 78 22 chr1 168927632 168927925 -73736428 + L1MC4a LINE L1 5656 5990 -1818 2302 114 0 0 chr1 168928005 168928303 -73736050 - AluSx SINE Alu -14 298 1 470 325 51 17 chr1 168928467 168928701 -73735652 + MIR SINE MIR 21 262 0 1856 181 46 24 chr1 168929565 168930023 -73734330 + Charlie4a DNA MER1_type 32 499 -9 246 333 114 8 chr1 168930180 168930312 -73734041 + L2 LINE L2 3126 3271 -1 305 352 34 23 chr1 168930330 168930506 -73733847 + MIR SINE MIR 29 206 -56 6543 134 25 14 chr1 168930594 168930634 -73733719 + L1MC1 LINE L1 5184 5222 -1111 2233 115 0 3 chr1 168930634 168930930 -73733423 - AluSx SINE Alu -17 295 1 6543 134 25 14 chr1 168930930 168932025 -73732328 + L1MC1 LINE L1 5222 6325 -8 203 272 41 68 chr1 168932109 168932256 -73732097 + L2 LINE L2 2917 3059 -213 323 185 61 24 chr1 168933647 168933796 -73730557 + L1MC5 LINE L1 7856 8042 0 742 232 54 54 chr1 168934045 168934321 -73730032 - L1ME4a LINE L1 -40 6081 5806 252 0 0 0 chr1 168934522 168934550 -73729803 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 780 156 47 0 chr1 168934559 168934687 -73729666 - FRAM SINE Alu -25 151 18 232 236 47 38 chr1 168934831 168934937 -73729416 + L1M4 LINE L1 5052 5158 -988 328 258 81 124 chr1 168935264 168935659 -73728694 - L1ME4a LINE L1 -310 5811 5434 1465 134 22 4 chr1 168936046 168936277 -73728076 + AluSg SINE Alu 1 235 -75 400 184 2 30 chr1 168936894 168936988 -73727365 + AluSg/x SINE Alu 217 288 -14 24 24 0 24 chr1 168936990 168937004 -73727349 + AT_rich Low_complexity Low_complexity 1 14 -27 2061 143 0 7 chr1 168937004 168937304 -73727049 - AluJb SINE Alu -14 298 1 24 24 0 24 chr1 168937304 168937331 -73727022 + AT_rich Low_complexity Low_complexity 14 41 0 2284 104 3 3 chr1 168937499 168937807 -73726546 - AluSx SINE Alu -4 308 1 231 313 16 0 chr1 168938684 168938748 -73725605 + L2 LINE L2 3199 3263 -9 2183 115 0 3 chr1 168938805 168939101 -73725252 + AluSx SINE Alu 1 295 -17 455 243 7 50 chr1 168939309 168939449 -73724904 + MIR3 SINE MIR 68 201 -7 372 176 15 0 chr1 168940352 168940420 -73723933 + MIR3 SINE MIR 113 181 -27 2336 60 32 3 chr1 168941642 168941926 -73722427 - AluSq SINE Alu -21 292 1 2300 100 0 13 chr1 168941969 168942278 -73722075 - AluSp SINE Alu -8 305 1 295 245 85 80 chr1 168942499 168942699 -73721654 + MIR SINE MIR 49 249 -13 1688 147 70 30 chr1 168942725 168943024 -73721329 - AluJo SINE Alu -1 311 1 28 0 0 0 chr1 168943477 168943505 -73720848 + AT_rich Low_complexity Low_complexity 1 28 0 3956 137 10 11 chr1 168943647 168944273 -73720080 + L1MC1 LINE L1 5454 6078 -255 264 206 132 0 chr1 168944273 168944341 -73720012 - MIR3 SINE MIR -23 185 109 4373 184 127 19 chr1 168945094 168946592 -73717761 + MER52A LTR ERV1 1 1755 0 241 133 0 56 chr1 168946870 168946960 -73717393 + (TCTCCC)n Simple_repeat Simple_repeat 2 86 0 6443 77 36 36 chr1 168946960 168948915 -73715438 + SVA Other Other 1 1386 0 2327 98 3 7 chr1 168950213 168950519 -73713834 - AluSp SINE Alu -8 305 1 2306 101 0 7 chr1 168950860 168951167 -73713186 + AluSx SINE Alu 1 305 -7 2261 107 0 0 chr1 168952501 168952799 -73711554 - AluSx SINE Alu -14 298 1 183 42 0 0 chr1 168952819 168952843 -73711510 + (CA)n Simple_repeat Simple_repeat 2 25 0 881 238 104 56 chr1 168954083 168954112 -73710241 + MLT1H LTR MaLR 53 79 -476 773 168 0 46 chr1 168954112 168954243 -73710110 + FLAM_C SINE Alu 1 125 -8 195 42 0 0 chr1 168954243 168954267 -73710086 + (GA)n Simple_repeat Simple_repeat 2 25 0 881 238 104 56 chr1 168954267 168954655 -73709698 + MLT1H LTR MaLR 79 481 -74 2238 98 16 3 chr1 168954655 168954961 -73709392 + AluSx SINE Alu 1 310 -2 881 238 104 56 chr1 168954961 168955014 -73709339 + MLT1H LTR MaLR 481 530 -25 525 242 42 53 chr1 168956032 168956222 -73708131 + MIR SINE MIR 5 192 -70 730 131 0 0 chr1 168956229 168956336 -73708017 + AluJb SINE Alu 205 311 -1 219 36 0 0 chr1 168957725 168957753 -73706600 + (CA)n Simple_repeat Simple_repeat 1 28 0 226 362 57 21 chr1 168957759 168957900 -73706453 + L2 LINE L2 3122 3267 -5 247 179 45 60 chr1 168959813 168959880 -73704473 - L2 LINE L2 0 3313 3248 2409 78 7 0 chr1 168960043 168960338 -73704015 - AluSc SINE Alu -12 297 1 427 254 66 0 chr1 168963010 168963132 -73701221 + MIR SINE MIR 73 202 -60 320 309 152 26 chr1 168963650 168963919 -73700434 - L3b LINE CR1 -90 1493 1191 226 289 144 10 chr1 168964333 168964437 -73699916 - L2 LINE L2 0 3272 3155 724 149 71 0 chr1 168966039 168966180 -73698173 - L1MB7 LINE L1 0 6184 6034 2150 128 0 0 chr1 168966852 168967148 -73697205 - AluSx SINE Alu -16 296 1 444 266 22 14 chr1 168967150 168967289 -73697064 - MER5B DNA MER1_type -38 140 1 395 187 53 0 chr1 168967321 168967396 -73696957 - MER116 DNA Mariner -1 79 1 378 0 0 0 chr1 168967740 168967782 -73696571 + (TG)n Simple_repeat Simple_repeat 2 43 0 838 203 0 0 chr1 168968175 168968328 -73696025 + AluSp SINE Alu 1 153 -160 752 122 0 8 chr1 168968429 168968552 -73695801 + AluSp/q SINE Alu 192 313 0 188 340 95 0 chr1 168968576 168968776 -73695577 + L2 LINE L2 2404 2622 -692 2497 181 74 20 chr1 168968776 168969263 -73695090 + MLT2B1 LTR ERVL 8 520 0 2200 120 0 0 chr1 168969395 168969686 -73694667 + AluSx SINE Alu 1 291 -21 209 250 78 0 chr1 168971522 168971586 -73692767 - L2 LINE L2 -2 3311 3243 463 151 105 0 chr1 168971625 168971711 -73692642 - MER53 DNA DNA 0 189 95 1942 109 4 0 chr1 168971771 168972027 -73692326 + AluSx SINE Alu 1 257 -55 1315 132 0 0 chr1 168972029 168972211 -73692142 + AluSg/x SINE Alu 127 310 0 206 208 62 0 chr1 168972418 168972466 -73691887 + L2 LINE L2 3263 3313 0 363 247 34 34 chr1 168972498 168972644 -73691709 - L2 LINE L2 -218 3054 2909 2316 114 0 0 chr1 168972649 168972948 -73691405 - AluSx SINE Alu -13 299 1 183 162 0 0 chr1 168973898 168973935 -73690418 + T-rich Low_complexity Low_complexity 1 37 0 1955 143 0 6 chr1 168973951 168974265 -73690088 - AluSx SINE Alu 0 312 1 2270 213 64 24 chr1 168974288 168974610 -73689743 - L1ME1 LINE L1 -19 6147 5790 2300 88 7 0 chr1 168974610 168974915 -73689438 - AluY SINE Alu -4 307 1 2270 213 64 24 chr1 168974915 168975173 -73689180 - L1ME1 LINE L1 -376 5790 5544 260 113 14 42 chr1 168975196 168975267 -73689086 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 2936 201 86 28 chr1 168975277 168975488 -73688865 - L1ME3 LINE L1 -2 6160 5950 1071 248 85 79 chr1 168975488 168976070 -73688283 - L1MA6 LINE L1 -373 5927 5339 2013 99 50 0 chr1 168976070 168976352 -73688001 - AluSg SINE Alu -14 296 1 1071 248 85 79 chr1 168976352 168976403 -73687950 - L1MA6 LINE L1 -961 5339 5290 1339 113 5 5 chr1 168976415 168976609 -73687744 - AluJb SINE Alu -118 194 1 2329 233 39 50 chr1 168977036 168977388 -73686965 - L1ME3A LINE L1 -23 6147 5805 2058 108 7 10 chr1 168977388 168977683 -73686670 - AluSx SINE Alu -18 294 1 2329 233 39 50 chr1 168977683 168978031 -73686322 - L1ME3A LINE L1 -365 5805 5455 231 189 0 0 chr1 168978397 168978434 -73685919 + L2 LINE L2 3213 3249 -23 274 59 0 0 chr1 168978880 168978914 -73685439 - AluSg/x SINE Alu -173 127 94 425 275 46 0 chr1 168978916 168979047 -73685306 + MIR SINE MIR 57 193 -69 1940 117 72 0 chr1 168979253 168979544 -73684809 + AluSx SINE Alu 1 312 0 491 0 17 0 chr1 168979550 168979609 -73684744 + (TA)n Simple_repeat Simple_repeat 2 61 0 698 244 0 0 chr1 168979611 168979738 -73684615 + L2 LINE L2 3185 3311 -2 357 277 0 11 chr1 168980479 168980573 -73683780 - L2 LINE L2 0 3272 3180 2017 116 0 29 chr1 168980642 168980952 -73683401 - AluSx SINE Alu -11 301 1 2117 130 0 0 chr1 168981094 168981401 -73682952 - AluSx SINE Alu -5 307 1 228 302 0 23 chr1 168981544 168981630 -73682723 + L2 LINE L2 2368 2451 -863 464 298 58 34 chr1 168982393 168982601 -73681752 - L2 LINE L2 0 3272 3060 708 224 0 0 chr1 168982626 168982751 -73681602 + FLAM_C SINE Alu 2 126 -17 514 203 67 98 chr1 168982752 168982955 -73681398 - L1MD3 LINE L1 0 7995 7787 1826 149 30 0 chr1 168982955 168983251 -73681102 - AluJb SINE Alu -7 305 1 514 203 67 98 chr1 168983251 168983270 -73681083 - L1MD3 LINE L1 -208 7787 7769 1893 140 0 0 chr1 168983270 168983555 -73680798 - AluSx SINE Alu -2 310 26 514 203 67 98 chr1 168983555 168983576 -73680777 - L1MD3 LINE L1 -226 7769 7705 310 298 190 0 chr1 168983787 168983908 -73680445 + MER5A DNA MER1_type 16 159 -30 263 167 111 0 chr1 168983960 168984014 -73680339 + AluS SINE Alu 21 80 -223 285 250 0 76 chr1 168984293 168984385 -73679968 + MIR SINE MIR 52 136 -126 1592 156 21 70 chr1 168985535 168985717 -73678636 - AluJb SINE Alu 0 312 152 2026 115 0 0 chr1 168985717 168986005 -73678348 - AluSx SINE Alu -24 288 1 1592 156 21 70 chr1 168986005 168986150 -73678203 - AluJb SINE Alu -160 152 1 1702 175 65 3 chr1 168986540 168986911 -73677442 - MER69 DNA AcHobo 0 2526 2133 * 2127 219 108 89 chr1 168986896 168987028 -73677325 - MER69 DNA AcHobo -441 785 657 2292 102 0 3 chr1 168987028 168987342 -73677011 + AluSp SINE Alu 1 313 0 2232 98 0 0 chr1 168987351 168987648 -73676705 + AluSc SINE Alu 1 297 -12 2127 219 108 89 chr1 168987648 168988105 -73676248 - MER69 DNA AcHobo -576 650 203 2187 89 3 13 chr1 168988105 168988409 -73675944 - AluSx SINE Alu -11 301 1 2127 219 108 89 chr1 168988409 168988423 -73675930 - MER69 DNA AcHobo -1023 203 191 690 209 0 8 chr1 168988423 168988557 -73675796 - FLAM_A SINE Alu 0 133 1 2127 219 108 89 chr1 168988557 168988712 -73675641 - MER69 DNA AcHobo -1035 191 1 1621 221 52 25 chr1 168989300 168989738 -73674615 - MER99 DNA DNA -1 827 378 431 206 11 11 chr1 168989840 168989931 -73674422 - MER99 DNA DNA -473 355 265 1149 154 123 0 chr1 168989931 168990158 -73674195 + Tigger1 DNA MER2_type 1 255 -2163 793 194 15 0 chr1 168990165 168990299 -73674054 - FLAM_A SINE Alu -6 136 1 7945 114 45 56 chr1 168990301 168991222 -73673131 + Tigger1 DNA MER2_type 240 1143 -1275 2340 93 0 3 chr1 168991222 168991534 -73672819 + AluY SINE Alu 1 311 0 7945 114 45 56 chr1 168991534 168991975 -73672378 + Tigger1 DNA MER2_type 1143 1587 -831 1921 156 0 0 chr1 168991977 168992272 -73672081 + AluJo SINE Alu 1 295 -17 775 299 62 35 chr1 168992451 168992819 -73671534 + HAL1 LINE L1 418 795 -1712 2163 121 0 6 chr1 168993155 168993470 -73670883 + AluSq SINE Alu 1 313 0 1036 70 70 0 chr1 168993476 168993619 -73670734 + Tigger1 DNA MER2_type 1223 1375 -1043 1805 164 10 0 chr1 168993865 168994158 -73670195 - AluJo SINE Alu -16 296 1 523 188 79 112 chr1 168994227 168994504 -73669849 + HAL1 LINE L1 865 1132 -1375 43014 35 22 3 chr1 168994508 169000493 -73663860 + L1PA3 LINE L1 52 6155 0 1587 258 110 31 chr1 169000548 169000921 -73663432 + HAL1 LINE L1 1214 1556 -951 827 147 0 0 chr1 169000921 169001091 -73663262 - FLAM_C SINE Alu 0 170 1 1587 258 110 31 chr1 169001091 169001488 -73662865 + HAL1 LINE L1 1556 2046 -461 961 193 11 0 chr1 169001515 169001702 -73662651 - L1PB4 LINE L1 -1 6155 5967 2418 65 0 3 chr1 169001935 169002242 -73662111 + AluY SINE Alu 1 306 -5 5221 143 22 32 chr1 169002242 169003058 -73661295 - L1MA4 LINE L1 -14 7705 6883 2637 118 26 26 chr1 169003058 169003481 -73660872 - MSTB LTR MaLR -1 425 3 5221 143 22 32 chr1 169003481 169003555 -73660798 - L1MA4 LINE L1 -836 6883 6822 1873 129 29 0 chr1 169003555 169003834 -73660519 - AluSx SINE Alu -25 287 1 5221 143 22 32 chr1 169003834 169003857 -73660496 - L1MA4 LINE L1 -897 6822 6800 13113 162 27 30 chr1 169003901 169005722 -73658631 - L1MA4 LINE L1 -761 6804 4980 1546 190 21 0 chr1 169005722 169006006 -73658347 + AluJo SINE Alu 1 290 -22 13113 162 27 30 chr1 169006006 169006240 -73658113 - L1MA4 LINE L1 -2585 4980 4747 1863 156 0 7 chr1 169006240 169006542 -73657811 - AluSx SINE Alu -12 300 1 13113 162 27 30 chr1 169006542 169007225 -73657128 - L1MA4 LINE L1 -2818 4747 4071 878 121 0 0 chr1 169007364 169007488 -73656865 - AluSq/x SINE Alu -188 124 1 5061 230 118 50 chr1 169007489 169007806 -73656547 - L1MA4 LINE L1 -4488 3077 2783 1932 131 7 7 chr1 169007806 169008104 -73656249 - AluSx SINE Alu -14 298 1 5061 230 118 50 chr1 169008104 169008625 -73655728 - L1MA4 LINE L1 -4782 2783 2299 477 0 0 0 chr1 169008625 169008678 -73655675 + (TG)n Simple_repeat Simple_repeat 2 54 0 5061 230 118 50 chr1 169008678 169009519 -73654834 - L1MA4 LINE L1 -5266 2299 1517 5998 72 41 20 chr1 169009519 169010326 -73654027 - LTR12 LTR ERV1 0 826 3 5061 230 118 50 chr1 169010326 169010871 -73653482 - L1MA4 LINE L1 -6048 1517 1011 2040 142 35 44 chr1 169010871 169011238 -73653115 + THE1B LTR MaLR 1 364 0 405 0 0 0 chr1 169012253 169012298 -73652055 + (CA)n Simple_repeat Simple_repeat 2 46 0 2175 116 0 3 chr1 169012802 169013105 -73651248 - AluSq SINE Alu -11 302 1 255 222 83 14 chr1 169013237 169013309 -73651044 + MIR SINE MIR 110 186 -76 4336 169 29 27 chr1 169013331 169013617 -73650736 + L1MB5 LINE L1 5335 5619 -555 1659 143 11 14 chr1 169013617 169013903 -73650450 + AluJb SINE Alu 11 295 -17 4336 169 29 27 chr1 169013903 169014455 -73649898 + L1MB5 LINE L1 5619 6174 0 2119 114 3 7 chr1 169014499 169014798 -73649555 + AluSx SINE Alu 1 298 -14 636 221 74 25 chr1 169014812 169014975 -73649378 - MER5B DNA MER1_type -3 175 5 264 265 24 0 chr1 169015923 169016006 -73648347 - MLT1E LTR MaLR -506 87 3 1771 155 3 3 chr1 169016564 169016854 -73647499 - AluJb SINE Alu -11 301 12 1737 173 51 110 chr1 169017482 169017799 -73646554 - MLT1D LTR MaLR -9 496 221 2010 127 3 3 chr1 169017799 169018099 -73646254 - AluSx SINE Alu -12 300 1 1737 173 51 110 chr1 169018099 169018308 -73646045 - MLT1D LTR MaLR -284 221 1 1915 143 37 0 chr1 169018538 169018838 -73645515 - AluSx SINE Alu -1 311 1 798 199 33 0 chr1 169019017 169019168 -73645185 - MIR SINE MIR -28 234 79 204 179 0 0 chr1 169019390 169019429 -73644924 + T-rich Low_complexity Low_complexity 1 39 0 497 346 26 87 chr1 169019704 169020373 -73643980 + L3 LINE CR1 63 746 -831 514 336 88 34 chr1 169020396 169020634 -73643719 + L2 LINE L2 3021 3271 -1 230 186 23 0 chr1 169020634 169020677 -73643676 + GA-rich Low_complexity Low_complexity 1 44 0 1393 239 127 47 chr1 169020729 169021201 -73643152 - MLT1H1 LTR MaLR -13 542 33 274 326 200 23 chr1 169021246 169021421 -73642932 + MIR SINE MIR 14 219 -43 2484 59 0 0 chr1 169021751 169022054 -73642299 + AluY SINE Alu 1 303 -8 881 227 289 6 chr1 169022331 169022705 -73641648 + L2 LINE L2 2625 2892 -421 1748 145 3 18 chr1 169022705 169022988 -73641365 + AluSx SINE Alu 5 321 0 263 0 53 0 chr1 169022988 169023026 -73641327 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 881 227 289 6 chr1 169023026 169023144 -73641209 + L2 LINE L2 2892 3270 -43 1032 279 36 47 chr1 169023175 169023478 -73640875 + MLT1I LTR MaLR 30 330 -79 1948 130 0 13 chr1 169023478 169023779 -73640574 + AluSq SINE Alu 1 297 -16 1032 279 36 47 chr1 169023779 169023859 -73640494 + MLT1I LTR MaLR 330 409 0 317 250 0 0 chr1 169023952 169024016 -73640337 - L1MC4 LINE L1 -1339 6703 6640 656 213 0 63 chr1 169024022 169024196 -73640157 - MIR SINE MIR 0 262 100 441 312 72 0 chr1 169025291 169025429 -73638924 + MIR SINE MIR 32 179 -83 2069 148 30 30 chr1 169025899 169026263 -73638090 - THE1B LTR MaLR 0 364 1 204 307 109 0 chr1 169026882 169026983 -73637370 + L2 LINE L2 3161 3272 0 820 179 26 19 chr1 169027405 169027561 -73636792 + MER5B DNA MER1_type 16 172 -6 354 194 56 144 chr1 169027564 169027630 -73636723 - MER5B DNA MER1_type -31 147 77 769 152 0 36 chr1 169027630 169027768 -73636585 + FLAM_A SINE Alu 1 133 0 354 194 56 144 chr1 169027768 169027861 -73636492 - MER5B DNA MER1_type -101 77 2 312 303 41 41 chr1 169027861 169028005 -73636348 - MIR3 SINE MIR -47 161 18 2353 79 7 0 chr1 169028362 169028667 -73635686 - AluSq SINE Alu -4 309 3 533 291 132 9 chr1 169028798 169029027 -73635326 - MIR SINE MIR -6 256 5 2082 104 7 3 chr1 169029068 169029367 -73634986 - AluSx SINE Alu -4 308 9 1835 168 0 0 chr1 169029375 169029673 -73634680 - AluSx SINE Alu -14 298 1 1399 179 8 0 chr1 169030868 169031125 -73633228 + AluJb SINE Alu 1 259 -53 240 306 30 22 chr1 169031725 169031859 -73632494 - L2 LINE L2 -233 3039 2905 287 304 167 47 chr1 169032800 169033085 -73631268 + L2 LINE L2 2278 2626 -688 2394 62 0 3 chr1 169033085 169033391 -73630962 - AluY SINE Alu -6 305 1 287 304 167 47 chr1 169033391 169033507 -73630846 + L2 LINE L2 2626 2727 -587 672 260 35 15 chr1 169033897 169034097 -73630256 + L1MC4a LINE L1 6678 6881 -927 2122 102 3 0 chr1 169034253 169034548 -73629805 - AluSx SINE Alu -16 296 1 1549 152 0 84 chr1 169035577 169035777 -73628576 - AluJo SINE Alu -16 296 132 1924 149 3 16 chr1 169035777 169036092 -73628261 + AluSx SINE Alu 1 311 -1 1549 152 0 84 chr1 169036092 169036214 -73628139 - AluJo SINE Alu -180 132 1 2027 113 27 0 chr1 169036218 169036510 -73627843 - AluSg SINE Alu -10 300 1 4888 124 94 6 chr1 169036518 169037330 -73627023 - L1MC1 LINE L1 0 6333 5451 384 215 25 13 chr1 169038144 169038223 -73626130 - MER63 DNA MER1_type -4 1056 977 343 204 22 117 chr1 169038223 169038360 -73625993 - MER63 DNA MER1_type -310 752 3 1648 168 0 52 chr1 169038374 169038701 -73625652 - AluJo SINE Alu -2 310 1 207 0 0 0 chr1 169040191 169040214 -73624139 + (A)n Simple_repeat Simple_repeat 1 23 0 589 322 39 39 chr1 169040542 169040775 -73623578 - MIR SINE MIR 0 262 30 2504 115 20 6 chr1 169040843 169041200 -73623153 + THE1B LTR MaLR 1 362 -2 2139 113 0 0 chr1 169041241 169041532 -73622821 - AluSx SINE Alu -21 291 1 353 224 0 0 chr1 169041710 169041786 -73622567 - MER116 DNA Mariner -4 76 1 353 360 45 66 chr1 169041857 169042063 -73622290 + L2 LINE L2 2980 3180 -92 2249 88 16 3 chr1 169042063 169042369 -73621984 - AluSq SINE Alu -3 310 1 353 360 45 66 chr1 169042369 169042451 -73621902 + L2 LINE L2 3180 3262 -10 217 192 19 0 chr1 169043745 169043797 -73620556 - L2 LINE L2 -339 2974 2922 1543 156 36 17 chr1 169043972 169044273 -73620080 - AluSx SINE Alu -5 307 1 230 237 127 42 chr1 169044737 169044855 -73619498 - L1ME4a LINE L1 -35 6086 5959 2163 115 0 0 chr1 169044881 169045186 -73619167 + AluSq SINE Alu 1 305 -8 554 211 23 23 chr1 169045213 169045341 -73619012 + MER5B DNA MER1_type 48 175 -3 247 208 0 19 chr1 169047049 169047102 -73617251 + (TG)n Simple_repeat Simple_repeat 2 53 0 186 43 0 0 chr1 169047761 169047784 -73616569 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2816 16 0 0 chr1 169048437 169048755 -73615598 + AluYb8 SINE Alu 1 318 0 1774 157 81 36 chr1 169048815 169049172 -73615181 + MLT1A2 LTR MaLR 1 373 -1 880 219 6 0 chr1 169050748 169050912 -73613441 + FAM SINE Alu 1 165 -10 368 279 79 21 chr1 169051053 169051193 -73613160 + MIR SINE MIR 76 223 -39 426 280 49 7 chr1 169051662 169051805 -73612548 - MIR SINE MIR -12 250 102 183 325 132 0 chr1 169052007 169052121 -73612232 + L2 LINE L2 2525 2653 -661 417 288 94 24 chr1 169052729 169052899 -73611454 + MIR SINE MIR 36 217 -45 205 198 319 0 chr1 169053147 169053238 -73611115 + L2 LINE L2 3141 3260 -12 197 301 11 0 chr1 169054219 169054312 -73610041 + CT-rich Low_complexity Low_complexity 4 97 0 487 270 64 24 chr1 169054322 169054503 -73609850 - MLT1L LTR MaLR -75 523 342 2059 107 31 0 chr1 169054549 169054840 -73609513 + AluSq SINE Alu 1 300 -13 227 163 0 23 chr1 169054853 169054896 -73609457 - Charlie8 DNA MER1_type -2141 276 235 4253 74 13 18 chr1 169055108 169055665 -73608688 - MER41A LTR ERV1 0 554 1 364 123 18 0 chr1 169055923 169055980 -73608373 + MER5A DNA MER1_type 132 189 0 834 181 0 69 chr1 169056023 169056211 -73608142 - MER5B DNA MER1_type -3 175 1 194 323 62 0 chr1 169057466 169057531 -73606822 - MER5A DNA MER1_type -66 123 55 708 180 62 0 chr1 169057588 169057716 -73606637 + FLAM_C SINE Alu 2 137 -6 1909 131 3 0 chr1 169057723 169058006 -73606347 + AluSx SINE Alu 9 292 -20 2077 87 35 0 chr1 169058057 169058343 -73606010 - AluSq SINE Alu -17 296 1 807 296 45 4 chr1 169058629 169058872 -73605481 - MIR SINE MIR -5 257 5 333 269 168 43 chr1 169058895 169059138 -73605215 - L1ME LINE L1 -582 5584 5315 7145 196 103 16 chr1 169059375 169061399 -73602954 - L1M3 LINE L1 -660 5520 3329 1262 149 33 9 chr1 169062156 169062370 -73601983 - MER20 DNA MER1_type 0 219 1 1253 264 118 11 chr1 169062677 169063374 -73600979 + L1M4 LINE L1 4100 4870 -1276 219 222 89 0 chr1 169069794 169069839 -73594514 + L2 LINE L2 3224 3272 0 2214 90 3 7 chr1 169070331 169070632 -73593721 + AluSq SINE Alu 1 300 -13 1831 314 2 41 chr1 169071208 169071816 -73592537 + L1PA16 LINE L1 1 584 -6203 15374 204 38 14 chr1 169071946 169072555 -73591798 + L1PA16 LINE L1 1343 1936 -4881 2163 116 0 3 chr1 169072555 169072866 -73591487 - AluSx SINE Alu -2 310 1 15374 204 38 14 chr1 169072866 169075917 -73588436 + L1PA16 LINE L1 1936 4914 -1903 2348 82 0 3 chr1 169075917 169076222 -73588131 + AluSc SINE Alu 1 304 -5 15374 204 38 14 chr1 169076222 169076436 -73587917 + L1PA16 LINE L1 4914 5122 -1695 234 0 0 0 chr1 169076436 169076462 -73587891 + (CAA)n Simple_repeat Simple_repeat 2 27 0 15374 204 38 14 chr1 169076462 169077931 -73586422 + L1PA16 LINE L1 5122 6817 0 23 0 0 0 chr1 169078476 169078499 -73585854 + AT_rich Low_complexity Low_complexity 1 23 0 423 296 94 57 chr1 169078525 169078856 -73585497 + L2 LINE L2 2866 3208 -105 2108 118 0 7 chr1 169079478 169079775 -73584578 - AluSx SINE Alu -17 295 1 6156 159 11 4 chr1 169080678 169080751 -73583602 + L1PB1 LINE L1 4323 4394 -1757 180 0 0 0 chr1 169080751 169080771 -73583582 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6156 159 11 4 chr1 169080771 169082510 -73581843 + L1PB1 LINE L1 4394 6149 -2 216 135 0 0 chr1 169083576 169083613 -73580740 + (CATA)n Simple_repeat Simple_repeat 2 38 0 498 113 25 0 chr1 169084163 169084243 -73580110 - AluSg/x SINE Alu -13 297 216 242 238 90 82 chr1 169084603 169084725 -73579628 + L1ME3A LINE L1 6033 6155 -15 584 316 124 9 chr1 169085200 169085539 -73578814 - L1MC/D LINE L1 -2042 5766 5389 241 192 64 13 chr1 169085689 169085767 -73578586 - L1MC4 LINE L1 0 8042 7961 855 264 90 59 chr1 169085782 169086206 -73578147 - L1MC4 LINE L1 -144 7898 7462 239 152 0 0 chr1 169086207 169086253 -73578100 + A-rich Low_complexity Low_complexity 2 47 0 27 29 0 0 chr1 169086470 169086504 -73577849 + AT_rich Low_complexity Low_complexity 1 34 0 216 244 103 26 chr1 169087755 169087833 -73576520 - MIR3 SINE MIR 0 208 125 216 278 42 14 chr1 169088231 169088303 -73576050 + L2 LINE L2 710 783 -2531 339 313 25 44 chr1 169088351 169088511 -73575842 + L2 LINE L2 1435 1591 -1723 2329 7 0 0 chr1 169088517 169088789 -73575564 - L1PA2 LINE L1 -602 5553 5282 5333 13 11 0 chr1 169088789 169089398 -73574955 + L1PA2 LINE L1 5536 6155 0 1349 272 199 22 chr1 169089434 169090194 -73574159 + L2 LINE L2 1617 2510 -804 259 268 0 0 chr1 169090280 169090336 -73574017 + L2 LINE L2 2973 3028 -285 314 227 57 11 chr1 169090402 169090490 -73573863 + L2 LINE L2 3172 3263 -50 967 221 5 25 chr1 169091156 169091355 -73572998 + MER44D DNA MER2_type 32 226 -479 1936 154 24 3 chr1 169091373 169091710 -73572643 + MER44D DNA MER2_type 384 599 -6 23 0 0 0 chr1 169092224 169092247 -73572106 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 169092462 169092483 -73571870 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 169095034 169095073 -73569280 + AT_rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr1 169095257 169095291 -73569062 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr1 169095751 169095773 -73568580 + AT_rich Low_complexity Low_complexity 1 22 0 230 210 32 65 chr1 169097001 169097063 -73567290 + MER105 DNA DNA 15 74 -130 532 211 35 0 chr1 169097102 169097216 -73567137 + MER105 DNA DNA 69 186 -18 1853 162 0 7 chr1 169098396 169098693 -73565660 - AluSx SINE Alu -15 297 3 1360 246 171 61 chr1 169098769 169099493 -73564860 + L2 LINE L2 1699 2502 -812 218 236 0 55 chr1 169101070 169101125 -73563228 - MIR SINE MIR -136 72 21 204 311 0 16 chr1 169101330 169101391 -73562962 + L2 LINE L2 2947 3006 -307 25 51 0 0 chr1 169101493 169101532 -73562821 + AT_rich Low_complexity Low_complexity 1 39 0 2279 74 0 14 chr1 169101865 169102162 -73562191 - AluY SINE Alu -18 293 1 665 134 101 17 chr1 169102542 169102661 -73561692 - FLAM_C SINE Alu -4 129 1 528 280 45 15 chr1 169103458 169103590 -73560763 - L2 LINE L2 0 3272 3137 2131 119 0 3 chr1 169104119 169104413 -73559940 + AluSx SINE Alu 5 297 -15 451 286 75 114 chr1 169104475 169104860 -73559493 + L2 LINE L2 2902 3271 -1 2158 104 13 0 chr1 169106056 169106355 -73557998 - AluSq SINE Alu -10 303 1 35 24 0 0 chr1 169107994 169108036 -73556317 + AT_rich Low_complexity Low_complexity 1 42 0 461 300 17 8 chr1 169109397 169109517 -73554836 - MIR3 SINE MIR -30 178 58 23 54 0 0 chr1 169109538 169109575 -73554778 + AT_rich Low_complexity Low_complexity 1 37 0 2049 124 7 20 chr1 169110094 169110400 -73553953 - AluSx SINE Alu -10 302 1 953 193 153 11 chr1 169110667 169110941 -73553412 + LTR37A LTR ERV1 89 401 -25 676 160 50 0 chr1 169110951 169111070 -73553283 + FLAM_C SINE Alu 2 126 -7 648 143 137 8 chr1 169111425 169111612 -73552741 + MER33 DNA MER1_type 1 208 -116 904 78 0 0 chr1 169111860 169111976 -73552377 + AluY SINE Alu 175 290 -21 914 299 119 21 chr1 169112013 169112601 -73551752 - L1MB8 LINE L1 -255 5923 5257 221 288 171 9 chr1 169112915 169113026 -73551327 + L2 LINE L2 2164 2292 -1022 422 227 18 158 chr1 169113279 169113557 -73550796 + MER102a DNA MER1_type 92 330 0 243 321 62 0 chr1 169113804 169113885 -73550468 + MIR SINE MIR 49 134 -128 328 245 41 31 chr1 169113949 169114047 -73550306 - MIR3 SINE MIR -46 162 64 25 31 0 0 chr1 169115126 169115158 -73549195 + AT_rich Low_complexity Low_complexity 1 32 0 265 264 144 72 chr1 169116338 169116588 -73547765 - L3b LINE CR1 -42 1541 1274 34 0 0 0 chr1 169117024 169117058 -73547295 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr1 169117418 169117447 -73546906 + AT_rich Low_complexity Low_complexity 1 29 0 869 243 68 17 chr1 169118466 169118701 -73545652 + MIR SINE MIR 16 262 0 199 296 244 0 chr1 169119091 169119226 -73545127 + MIR3 SINE MIR 25 192 -16 21 36 0 0 chr1 169119898 169119926 -73544427 + AT_rich Low_complexity Low_complexity 1 28 0 198 314 63 63 chr1 169121237 169121428 -73542925 + L2 LINE L2 1228 1418 -1896 526 155 217 16 chr1 169122761 169122890 -73541463 + MIR SINE MIR 75 229 -33 180 0 0 0 chr1 169123213 169123233 -73541120 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 354 23 0 0 chr1 169123233 169123276 -73541077 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2163 87 7 7 chr1 169123694 169123969 -73540384 + AluSx SINE Alu 2 276 -36 228 35 0 0 chr1 169123970 169123999 -73540354 + (CAA)n Simple_repeat Simple_repeat 2 30 0 514 229 172 13 chr1 169124704 169124861 -73539492 + MIR3 SINE MIR 20 201 -7 1300 145 54 22 chr1 169125151 169125427 -73538926 + L1MB3 LINE L1 5884 6168 -15 2014 59 3 69 chr1 169125881 169126170 -73538183 + AluY SINE Alu 33 302 -9 1355 56 0 0 chr1 169126304 169126464 -73537889 + AluSc SINE Alu 141 300 -9 21 36 0 0 chr1 169127670 169127698 -73536655 + AT_rich Low_complexity Low_complexity 1 28 0 182 250 68 45 chr1 169128700 169128788 -73535565 + L2 LINE L2 2448 2537 -777 21 0 0 0 chr1 169129085 169129106 -73535247 + AT_rich Low_complexity Low_complexity 1 21 0 290 233 0 0 chr1 169129248 169129308 -73535045 + L1M4 LINE L1 3797 3856 -2290 1379 153 35 93 chr1 169129309 169129622 -73534731 + AluJo SINE Alu 1 295 -7 288 0 0 0 chr1 169129631 169129663 -73534690 + (TA)n Simple_repeat Simple_repeat 2 33 0 29 90 0 0 chr1 169129857 169129935 -73534418 + AT_rich Low_complexity Low_complexity 1 78 0 248 182 39 39 chr1 169129936 169130013 -73534340 + L1P LINE L1 3850 3926 -2220 587 200 7 26 chr1 169130062 169130286 -73534067 + L1ME LINE L1 686 3916 -2164 22 0 0 0 chr1 169130366 169130388 -73533965 + AT_rich Low_complexity Low_complexity 1 22 0 200 269 134 17 chr1 169130491 169130610 -73533743 - L2 LINE L2 -4 3309 3177 201 344 32 54 chr1 169131114 169131207 -73533146 + MIR SINE MIR 8 98 -164 419 208 31 0 chr1 169131401 169131497 -73532856 + MER103 DNA DNA 59 157 -9 21 0 0 0 chr1 169131632 169131653 -73532700 + AT_rich Low_complexity Low_complexity 1 21 0 258 223 160 0 chr1 169131681 169131775 -73532578 + L1ME LINE L1 5704 5812 -309 21 57 0 0 chr1 169131928 169131963 -73532390 + AT_rich Low_complexity Low_complexity 1 35 0 978 250 157 29 chr1 169133457 169133833 -73530520 - L2 LINE L2 -4 3309 2886 189 154 0 0 chr1 169134146 169134185 -73530168 + T-rich Low_complexity Low_complexity 2 40 0 21 0 0 0 chr1 169135107 169135128 -73529225 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr1 169135324 169135360 -73528993 + AT_rich Low_complexity Low_complexity 1 36 0 915 217 60 30 chr1 169136591 169136826 -73527527 + MIR SINE MIR 2 243 -19 1753 133 85 0 chr1 169136936 169137206 -73527147 + AluSx SINE Alu 1 293 -19 2076 142 0 7 chr1 169137535 169137837 -73526516 - AluJo SINE Alu -10 302 3 2444 83 0 0 chr1 169138402 169138702 -73525651 - AluSq SINE Alu -13 300 1 388 236 132 35 chr1 169138873 169139017 -73525336 + MIR SINE MIR 95 252 -10 294 330 0 11 chr1 169140051 169140139 -73524214 + L2 LINE L2 3199 3285 -28 205 218 257 40 chr1 169140309 169140410 -73523943 - L2 LINE L2 -11 3302 3180 21 0 0 0 chr1 169140535 169140556 -73523797 + AT_rich Low_complexity Low_complexity 1 21 0 368 80 0 0 chr1 169140748 169140798 -73523555 - AluSx SINE Alu -4 296 247 1232 106 0 12 chr1 169140798 169140968 -73523385 - AluSx SINE Alu -144 168 1 207 204 0 20 chr1 169142150 169142199 -73522154 + CT-rich Low_complexity Low_complexity 4 51 0 42043 50 7 1 chr1 169142199 169148318 -73516035 - L1PA2 LINE L1 0 6155 1 205 236 0 83 chr1 169148497 169148569 -73515784 - L2 LINE L2 -926 2388 2323 334 313 189 19 chr1 169148631 169148785 -73515568 - L2 LINE L2 -973 2341 2214 1965 157 6 6 chr1 169148785 169149097 -73515256 + AluJo SINE Alu 1 312 0 334 313 189 19 chr1 169149097 169149360 -73514993 - L2 LINE L2 -1100 2214 1853 250 304 15 89 chr1 169150068 169150173 -73514180 + MIR3 SINE MIR 63 157 -51 2236 131 0 0 chr1 169150173 169150485 -73513868 + AluSx SINE Alu 1 312 0 250 304 15 89 chr1 169150485 169150514 -73513839 + MIR3 SINE MIR 157 187 -21 1939 146 7 0 chr1 169150789 169151097 -73513256 + AluSx SINE Alu 2 311 0 21 36 0 0 chr1 169152697 169152725 -73511628 + AT_rich Low_complexity Low_complexity 1 28 0 336 317 96 12 chr1 169154342 169154509 -73509844 + L2 LINE L2 15 195 -3119 261 222 0 71 chr1 169154802 169154901 -73509452 - L1ME LINE L1 -271 5899 5808 612 278 72 74 chr1 169155031 169155629 -73508724 - L1ME LINE L1 -913 5233 4637 5391 141 64 44 chr1 169155637 169155821 -73508532 - L1MA9 LINE L1 -5 6307 6128 2147 135 0 0 chr1 169155821 169156125 -73508228 + AluSx SINE Alu 1 304 -8 5391 141 64 44 chr1 169156125 169156254 -73508099 - L1MA9 LINE L1 -184 6128 6003 2043 133 60 0 chr1 169156254 169156571 -73507782 - MER1B DNA MER1_type -1 336 1 5391 141 64 44 chr1 169156571 169157315 -73507038 - L1MA9 LINE L1 -309 6003 5276 1904 150 67 3 chr1 169157315 169157642 -73506711 + MER7A DNA MER2_type 1 346 0 5391 141 64 44 chr1 169157642 169158171 -73506182 - L1MA9 LINE L1 -1036 5276 4661 2778 3 0 3 chr1 169158171 169158473 -73505880 + AluYa5 SINE Alu 1 301 -10 5391 141 64 44 chr1 169158473 169158871 -73505482 - L1MA9 LINE L1 -1651 4661 4273 371 295 13 0 chr1 169158929 169159085 -73505268 - L1ME LINE L1 -1617 4529 4372 2139 161 89 30 chr1 169159154 169159615 -73504738 - L1MB3 LINE L1 -1 6182 5695 180 0 0 0 chr1 169159743 169159763 -73504590 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 370 216 399 48 chr1 169159769 169159977 -73504376 + L2 LINE L2 252 532 -2782 931 163 146 11 chr1 169160002 169160129 -73504224 + MER3 DNA MER1_type 2 161 -48 180 0 0 0 chr1 169160129 169160149 -73504204 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 931 163 146 11 chr1 169160149 169160199 -73504154 + MER3 DNA MER1_type 161 203 -6 344 318 34 27 chr1 169160224 169160372 -73503981 + L2 LINE L2 575 723 -2591 3081 280 127 33 chr1 169160374 169161033 -73503320 + L2 LINE L2 844 1440 -1873 2416 71 0 13 chr1 169161033 169161341 -73503012 - AluY SINE Alu -6 305 2 3081 280 127 33 chr1 169161341 169162553 -73501800 + L2 LINE L2 1440 3275 -38 1580 156 16 12 chr1 169162746 169163002 -73501351 + AluJo SINE Alu 3 259 -53 31 58 0 0 chr1 169163482 169163534 -73500819 + AT_rich Low_complexity Low_complexity 1 52 0 226 273 207 8 chr1 169165112 169165233 -73499120 - L2 LINE L2 -7 3306 3162 929 233 29 61 chr1 169165597 169165940 -73498413 + MER46C DNA MER2_type 3 334 -4 454 278 112 38 chr1 169166099 169166466 -73497887 + L1ME3 LINE L1 14 407 -5712 1772 181 0 13 chr1 169166573 169166887 -73497466 + AluJb SINE Alu 1 310 -2 259 299 34 20 chr1 169166914 169167061 -73497292 + L1MCc LINE L1 24 172 -6251 2221 105 3 0 chr1 169167493 169167787 -73496566 - AluSx SINE Alu -17 295 1 240 244 0 17 chr1 169167896 169167967 -73496386 + L1P LINE L1 4165 4234 -1912 * 2511 220 99 40 chr1 169167964 169168494 -73495859 + L1ME3 LINE L1 4324 4821 -1324 1971 105 68 14 chr1 169168494 169168788 -73495565 - AluSx SINE Alu -2 310 1 2511 220 99 40 chr1 169168788 169168858 -73495495 + L1ME3 LINE L1 4821 4885 -1260 2282 100 3 3 chr1 169168858 169169157 -73495196 + AluSx SINE Alu 1 299 -13 2511 220 99 40 chr1 169169157 169170137 -73494216 + L1ME3 LINE L1 4885 6010 -135 713 118 71 82 chr1 169170147 169170317 -73494036 + MLT1A1 LTR MaLR 198 365 0 804 220 61 87 chr1 169170432 169170482 -73493871 + L1ME LINE L1 5237 5287 -858 2046 121 10 16 chr1 169170482 169170795 -73493558 + AluSx SINE Alu 2 312 0 804 220 61 87 chr1 169170795 169171119 -73493234 + L1ME LINE L1 5287 5594 -551 1571 199 21 11 chr1 169171119 169171233 -73493120 + AluJb SINE Alu 4 115 -197 189 0 0 0 chr1 169171233 169171254 -73493099 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1571 199 21 11 chr1 169171254 169171421 -73492932 + AluJb SINE Alu 115 288 -24 804 220 61 87 chr1 169171421 169171617 -73492736 + L1ME LINE L1 5594 5794 -351 1623 154 65 82 chr1 169171909 169172311 -73492042 + MLT2C1 LTR ERVL 1 395 -2 2206 109 3 3 chr1 169172633 169172937 -73491416 + AluSx SINE Alu 1 304 -8 1299 182 104 46 chr1 169173232 169173872 -73490481 + LTR49 LTR ERV1 1 707 0 24 0 0 0 chr1 169174554 169174578 -73489775 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr1 169174876 169174906 -73489447 + AT_rich Low_complexity Low_complexity 1 30 0 1925 154 0 10 chr1 169175465 169175764 -73488589 - AluSx SINE Alu -16 296 1 792 158 16 0 chr1 169175772 169175899 -73488454 - FLAM_A SINE Alu -4 129 1 936 284 38 11 chr1 169175931 169176192 -73488161 + MLT1H1 LTR MaLR 26 293 -262 1276 257 133 85 chr1 169176294 169176727 -73487626 + L1MEd LINE L1 60 471 -5648 1466 158 91 11 chr1 169176727 169176992 -73487361 + AluJo SINE Alu 12 297 -15 1276 257 133 85 chr1 169176992 169177660 -73486693 + L1MEd LINE L1 471 1213 -4906 444 246 251 19 chr1 169178030 169178241 -73486112 + HAL1 LINE L1 619 878 -1629 1333 203 42 55 chr1 169178266 169178519 -73485834 + Charlie4a DNA MER1_type 20 268 -1693 1650 194 3 10 chr1 169178519 169178813 -73485540 - AluJo SINE Alu -18 294 3 1333 203 42 55 chr1 169178813 169178939 -73485414 + Charlie4a DNA MER1_type 268 394 -114 517 263 100 27 chr1 169179123 169179423 -73484930 + HAL1 LINE L1 942 1263 -1244 1398 246 43 30 chr1 169179454 169179893 -73484460 + HAL1 LINE L1 1457 1901 -606 608 256 237 0 chr1 169180128 169180335 -73484018 + MIR SINE MIR 2 257 -5 2155 135 3 0 chr1 169180468 169180779 -73483574 + AluSx SINE Alu 1 312 0 209 314 88 39 chr1 169181040 169181142 -73483211 - L2 LINE L2 -15 3257 3151 2109 144 0 0 chr1 169182813 169183119 -73481234 - AluSx SINE Alu -6 306 1 1437 158 16 32 chr1 169183402 169183655 -73480698 + AluJo SINE Alu 28 276 -36 536 0 0 15 chr1 169183660 169183725 -73480628 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 716 158 0 0 chr1 169183730 169183844 -73480509 + FRAM SINE Alu 32 145 -31 718 48 38 0 chr1 169183844 169183949 -73480404 + (GAAA)n Simple_repeat Simple_repeat 1 109 0 362 163 0 12 chr1 169183982 169184062 -73480291 + GA-rich Low_complexity Low_complexity 2 80 0 213 182 0 0 chr1 169184063 169184096 -73480257 + polypurine Low_complexity Low_complexity 2 34 0 985 173 120 5 chr1 169184201 169184409 -73479944 - Tigger2 DNA MER2_type 0 2718 2487 4344 132 25 10 chr1 169184480 169185195 -73479158 - Tigger2 DNA MER2_type -1991 727 2 522 258 136 0 chr1 169185207 169185405 -73478948 + L1ME LINE L1 5496 5720 -401 353 316 95 43 chr1 169185998 169186229 -73478124 + L2 LINE L2 2431 2673 -641 225 225 73 99 chr1 169186264 169186415 -73477938 - HAL1 LINE L1 -6 2501 2355 23 0 0 0 chr1 169186415 169186438 -73477915 + AT_rich Low_complexity Low_complexity 1 23 0 323 23 0 0 chr1 169186440 169186483 -73477870 - L1PA4 LINE L1 -3 6152 6110 793 260 153 14 chr1 169186945 169187291 -73477062 - L1MC4a LINE L1 -1913 5895 5502 1722 180 0 7 chr1 169187329 169187634 -73476719 - AluJo SINE Alu -7 305 3 581 228 41 122 chr1 169187643 169188011 -73476342 - HAL1 LINE L1 -1357 1150 813 723 283 157 28 chr1 169188036 169188432 -73475921 - HAL1 LINE L1 -2044 463 17 619 300 95 9 chr1 169189504 169189714 -73474639 + MIR SINE MIR 21 248 -14 1765 266 72 17 chr1 169190374 169191097 -73473256 - L1ME3A LINE L1 -213 5957 5198 33 0 0 0 chr1 169191112 169191145 -73473208 + AT_rich Low_complexity Low_complexity 1 33 0 1747 155 7 48 chr1 169191226 169191536 -73472817 - AluJb SINE Alu -15 297 1 192 313 48 24 chr1 169191890 169191973 -73472380 - L3 LINE CR1 -132 1445 1361 347 289 173 0 chr1 169192111 169192284 -73472069 - L3 LINE CR1 -202 1375 1173 586 252 144 44 chr1 169192376 169192805 -73471548 + MLT1K LTR MaLR 3 474 -2 293 289 41 0 chr1 169192858 169192955 -73471398 - L3 LINE CR1 -442 1135 1035 202 343 108 10 chr1 169193764 169193866 -73470487 + MIR SINE MIR 23 134 -74 3681 205 42 55 chr1 169194542 169196050 -73468303 - L1MCb LINE L1 -4851 1194 6 194 91 30 0 chr1 169196994 169197027 -73467326 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 966 201 16 16 chr1 169197759 169197943 -73466410 + MLT1E LTR MaLR 8 191 -402 2217 105 0 0 chr1 169198000 169198286 -73466067 + AluSq SINE Alu 1 286 -27 208 307 203 12 chr1 169198573 169198736 -73465617 - L2 LINE L2 -2525 789 596 6130 10 1 4 chr1 169199176 169200032 -73464321 - L1PA3 LINE L1 -203 5952 5099 226 273 207 8 chr1 169200949 169201070 -73463283 - L2 LINE L2 -7 3306 3162 929 233 29 61 chr1 169201434 169201777 -73462576 + MER46C DNA MER2_type 3 334 -4 454 278 112 38 chr1 169201936 169202303 -73462050 + L1MEd LINE L1 14 407 -5712 1772 181 0 13 chr1 169202410 169202724 -73461629 + AluJb SINE Alu 1 310 -2 259 299 34 20 chr1 169202751 169202898 -73461455 + L1MCc LINE L1 24 172 -6251 2272 98 0 0 chr1 169203330 169203625 -73460728 - AluSx SINE Alu -17 295 1 1056 222 51 8 chr1 169204826 169205060 -73459293 - MIR SINE MIR 0 262 19 2355 75 7 10 chr1 169205225 169205531 -73458822 + AluSq SINE Alu 1 305 -8 456 286 153 47 chr1 169205585 169205886 -73458467 - Charlie8 DNA MER1_type -1887 530 198 217 286 0 0 chr1 169205909 169205958 -73458395 - MIR SINE MIR -212 50 2 472 300 33 22 chr1 169206269 169206449 -73457904 - MLT1K LTR MaLR -248 340 159 393 226 129 16 chr1 169207344 169207468 -73456885 - MIR SINE MIR -13 249 112 * 692 231 25 12 chr1 169207463 169207623 -73456730 - MIR SINE MIR -69 193 32 2304 111 0 0 chr1 169207633 169207939 -73456414 + AluSx SINE Alu 1 306 -6 646 224 81 92 chr1 169208707 169209190 -73455163 + Charlie2 DNA MER1_type 285 1017 -1845 380 167 83 19 chr1 169209187 169209295 -73455058 + Charlie2 DNA MER1_type 2748 2862 0 * 337 291 98 16 chr1 169209389 169209643 -73454710 + L1MCc LINE L1 2084 2358 -4764 639 318 127 37 chr1 169209667 169210179 -73454174 + L1MCc LINE L1 2432 2989 -4133 277 269 41 7 chr1 169210249 169210394 -73453959 + L1MCc LINE L1 3600 3749 -3192 854 278 104 50 chr1 169210453 169210949 -73453404 + L1MCc LINE L1 3885 4447 -2494 2042 130 7 3 chr1 169210949 169211249 -73453104 + AluSg SINE Alu 1 301 -9 854 278 104 50 chr1 169211249 169211598 -73452755 + L1MCc LINE L1 4447 4776 -2165 535 248 45 13 chr1 169211638 169211795 -73452558 + MLT1H LTR MaLR 80 241 -308 2366 106 0 3 chr1 169211800 169212111 -73452242 + AluSx SINE Alu 1 310 -2 401 138 15 0 chr1 169212131 169212196 -73452157 + MLT1H LTR MaLR 356 421 -46 1222 260 58 58 chr1 169212199 169212849 -73451504 + L1MCc LINE L1 5202 5852 -1089 1143 164 0 0 chr1 169212849 169213020 -73451333 + AluSq SINE Alu 1 171 -142 1141 230 26 14 chr1 169213203 169213551 -73450802 + L1PA15 LINE L1 2605 2956 -3190 5644 115 31 2 chr1 169213553 169215367 -73448986 + L1PA15 LINE L1 4312 6156 -9 771 135 43 43 chr1 169215370 169215418 -73448935 + L1PA15-16 LINE L1 1984 2031 -4818 1743 138 0 0 chr1 169215418 169215658 -73448695 + AluSx SINE Alu 42 281 -31 186 43 0 0 chr1 169215661 169215684 -73448669 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 771 135 43 43 chr1 169215684 169215794 -73448559 + L1PA15-16 LINE L1 2032 2146 -4703 1034 74 0 7 chr1 169215794 169215929 -73448424 - AluY SINE Alu -16 295 162 2205 125 8 14 chr1 169215929 169215962 -73448391 + L1PA15-16 LINE L1 2136 2168 -4681 1906 158 13 3 chr1 169215962 169216265 -73448088 + AluSx SINE Alu 1 306 -6 2205 125 8 14 chr1 169216265 169216592 -73447761 + L1PA15-16 LINE L1 2168 2494 -4355 1717 220 61 8 chr1 169216591 169217064 -73447289 + L1PA15-16 LINE L1 2881 3378 -3471 * 6449 168 17 24 chr1 169217074 169218417 -73445936 + L1MA2 LINE L1 4070 5403 -743 3554 86 29 23 chr1 169218420 169218980 -73445373 + L1MA2 LINE L1 5742 6304 0 5377 204 21 13 chr1 169218984 169220239 -73444114 + L1 LINE L1 3882 5146 -1703 8916 111 18 16 chr1 169220339 169221199 -73443154 - Tigger4(Zombi) DNA MER2_type -902 1829 965 2509 116 30 50 chr1 169221199 169221640 -73442713 + MSTB1 LTR MaLR 1 432 0 8916 111 18 16 chr1 169221640 169222114 -73442239 - Tigger4(Zombi) DNA MER2_type -1766 965 493 1782 171 0 41 chr1 169222114 169222430 -73441923 - AluSx SINE Alu -9 303 1 227 167 0 33 chr1 169222430 169222479 -73441874 - AluJo/FRAM SINE Alu -78 224 176 913 98 16 0 chr1 169222506 169222629 -73441724 - AluSg/x SINE Alu -16 294 170 6517 146 52 6 chr1 169222684 169223869 -73440484 - L1 LINE L1 -1143 5003 3764 1934 122 14 14 chr1 169224093 169224387 -73439966 - AluJb SINE Alu -18 294 1 1967 135 14 3 chr1 169224541 169224837 -73439516 + AluSx SINE Alu 1 299 -13 292 257 154 0 chr1 169224978 169225153 -73439200 + L1ME LINE L1 5622 5823 -298 249 216 41 21 chr1 169225258 169225355 -73438998 - L1ME3 LINE L1 0 6162 6064 1203 109 44 96 chr1 169225359 169225588 -73438765 + AluSg/x SINE Alu 96 312 0 941 223 40 94 chr1 169225593 169225965 -73438388 - L1ME3A LINE L1 -124 6046 5695 1044 157 46 5 chr1 169226426 169226642 -73437711 - L1MB8 LINE L1 -3 6175 5951 1749 177 44 10 chr1 169226650 169227241 -73437112 - L1ME3A LINE L1 -543 5641 5038 1165 262 47 28 chr1 169227241 169227889 -73436464 - L1ME LINE L1 -479 5691 5028 430 266 66 71 chr1 169228033 169228404 -73435949 + L1 LINE L1 3712 4080 -2066 2137 103 0 3 chr1 169228405 169228716 -73435637 + AluY SINE Alu 1 310 0 960 251 101 34 chr1 169228726 169229053 -73435300 + L2 LINE L2 1218 1566 -1748 347 281 61 0 chr1 169229080 169229194 -73435159 + MER58B DNA MER1_type 220 340 -1 1029 254 96 49 chr1 169229237 169229421 -73434932 + HAL1 LINE L1 1333 1507 -1000 2300 119 3 0 chr1 169229421 169229731 -73434622 + AluSx SINE Alu 1 311 -1 1029 254 96 49 chr1 169229731 169230006 -73434347 + HAL1 LINE L1 1507 1767 -740 2356 82 13 3 chr1 169230006 169230309 -73434044 + AluSp SINE Alu 1 306 -7 1029 254 96 49 chr1 169230309 169230656 -73433697 + HAL1 LINE L1 1767 2205 -302 524 307 39 0 chr1 169231101 169231280 -73433073 - MIR SINE MIR 0 262 77 2305 105 7 0 chr1 169231280 169231586 -73432767 + AluSx SINE Alu 1 308 -4 22 35 0 0 chr1 169231607 169231636 -73432717 + AT_rich Low_complexity Low_complexity 1 29 0 1015 178 32 0 chr1 169231775 169231960 -73432393 - MER46A DNA MER2_type -45 191 1 569 289 113 21 chr1 169232078 169232317 -73432036 - L2 LINE L2 -13 3300 3040 295 286 0 53 chr1 169233644 169233777 -73430576 + L2 LINE L2 3188 3313 0 742 172 8 0 chr1 169234163 169234291 -73430062 + FLAM_A SINE Alu 6 134 -8 22 0 0 0 chr1 169235472 169235494 -73428859 + GC_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr1 169235518 169235560 -73428793 + GC_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 169235966 169235987 -73428366 + GC_rich Low_complexity Low_complexity 1 21 0 336 199 134 129 chr1 169236146 169236255 -73428098 + L1MC4 LINE L1 7688 7800 -242 2295 87 0 0 chr1 169236255 169236554 -73427799 + AluSq SINE Alu 1 299 -14 336 199 134 129 chr1 169236554 169236615 -73427738 + L1MC4 LINE L1 7800 7859 -183 2257 104 0 7 chr1 169236616 169236925 -73427428 + AluSx SINE Alu 1 307 -5 2218 131 0 0 chr1 169237127 169237433 -73426920 - AluSx SINE Alu -6 306 1 2005 143 13 3 chr1 169237917 169238217 -73426136 + AluSx SINE Alu 1 303 -9 333 233 68 14 chr1 169238637 169238710 -73425643 - L2 LINE L2 -44 3269 3193 969 120 0 0 chr1 169238791 169238924 -73425429 + FLAM_C SINE Alu 1 133 0 307 331 67 56 chr1 169239023 169239201 -73425152 - MIR3 SINE MIR -21 187 8 1663 188 10 26 chr1 169240905 169241213 -73423140 + AluJb SINE Alu 1 303 -9 1256 159 10 19 chr1 169242079 169242287 -73422066 + AluJo SINE Alu 1 206 -106 366 271 47 8 chr1 169242389 169242518 -73421835 - MER113 DNA MER1_type? -114 407 274 2939 231 48 22 chr1 169242536 169242835 -73421518 + L1MEc LINE L1 1976 2266 -3949 2381 88 7 0 chr1 169242835 169243140 -73421213 + AluSc SINE Alu 1 307 -2 2939 231 48 22 chr1 169243140 169243913 -73420440 + L1MEc LINE L1 2266 3051 -3164 1494 181 57 30 chr1 169243913 169244212 -73420141 + AluJo SINE Alu 1 307 -5 2939 231 48 22 chr1 169244212 169244373 -73419980 + L1MEc LINE L1 3051 3206 -3009 371 282 160 0 chr1 169244565 169244778 -73419575 + L1MEc LINE L1 3265 3511 -2704 1906 153 0 23 chr1 169244880 169245188 -73419165 + AluJb SINE Alu 1 301 -11 7595 164 46 74 chr1 169245191 169247161 -73417192 + L1PA15-16 LINE L1 78 1991 -4858 538 158 11 32 chr1 169247161 169247256 -73417097 + AluJ/FLAM SINE Alu 1 93 -219 2827 189 86 21 chr1 169247754 169248638 -73415715 + L1PA13 LINE L1 1541 2480 -4317 1593 152 4 35 chr1 169248675 169248931 -73415422 + AluSq SINE Alu 1 248 -65 6439 102 29 14 chr1 169248931 169249966 -73414387 + MER11C LTR ERVK 8 1057 -14 406 136 0 0 chr1 169249978 169250044 -73414309 + AluS SINE Alu 230 295 -17 2013 88 96 32 chr1 169250044 169250418 -73413935 - MSTA LTR MaLR -30 398 1 2952 202 20 13 chr1 169250418 169251125 -73413228 + L1PA13 LINE L1 2475 3186 -3611 571 256 116 29 chr1 169251273 169251687 -73412666 - L1ME LINE L1 -322 5799 5350 440 220 147 33 chr1 169251924 169252074 -73412279 + MIR3 SINE MIR 1 167 -41 1468 228 135 50 chr1 169252255 169253093 -73411260 - L1MD3 LINE L1 -1 8041 7152 2209 112 0 3 chr1 169253462 169253795 -73410558 - AluSq SINE Alu 0 313 1 999 181 152 29 chr1 169254140 169254361 -73409992 - MER2 DNA MER2_type -1 344 81 2351 82 0 0 chr1 169254361 169254655 -73409698 - AluSc SINE Alu -10 299 6 999 181 152 29 chr1 169254655 169254709 -73409644 - MER2 DNA MER2_type -264 81 35 2211 78 3 36 chr1 169254910 169255217 -73409136 - AluY SINE Alu -14 297 1 285 344 37 37 chr1 169256282 169256445 -73407908 - L2 LINE L2 -213 3059 2897 208 376 41 18 chr1 169256781 169256951 -73407402 - L2 LINE L2 -546 2768 2595 957 205 56 19 chr1 169257245 169257460 -73406893 + MER58A DNA MER1_type 1 223 -1 1761 170 0 50 chr1 169257503 169257820 -73406533 - AluJb SINE Alu -11 301 1 1705 126 4 0 chr1 169258198 169258428 -73405925 - AluSq SINE Alu -82 231 1 22 0 0 0 chr1 169258434 169258456 -73405897 + AT_rich Low_complexity Low_complexity 1 22 0 424 154 0 96 chr1 169258544 169258648 -73405705 + FLAM_A SINE Alu 49 142 0 2446 77 7 0 chr1 169258763 169259062 -73405291 - AluSx SINE Alu -11 301 1 1185 195 173 28 chr1 169259063 169259294 -73405059 - L1ME1 LINE L1 -276 5890 5694 2265 120 0 0 chr1 169259294 169259593 -73404760 - AluSx SINE Alu -11 301 3 1185 195 173 28 chr1 169259593 169259725 -73404628 - L1ME1 LINE L1 -472 5694 5474 3606 184 41 25 chr1 169260583 169261387 -73402966 - Tigger2 DNA MER2_type -1876 842 26 1052 221 153 32 chr1 169261389 169261728 -73402625 + L1MD2 LINE L1 5954 6333 -26 273 70 70 35 chr1 169261724 169261781 -73402572 + L1MD3 LINE L1 7927 7985 -10 * 27 29 0 0 chr1 169263356 169263390 -73400963 + AT_rich Low_complexity Low_complexity 1 34 0 1701 122 4 0 chr1 169313390 169313627 -73350726 + AluSx SINE Alu 59 296 -16 520 236 173 60 chr1 169313647 169313999 -73350354 - L2 LINE L2 -871 2443 2052 2550 56 0 3 chr1 169314459 169314761 -73349592 + AluY SINE Alu 1 301 -10 347 204 82 10 chr1 169314785 169314883 -73349470 - MIR SINE MIR -49 213 109 2074 129 0 19 chr1 169315922 169316232 -73348121 - AluSx SINE Alu -8 304 1 974 137 30 71 chr1 169316417 169316614 -73347739 + MER53 DNA DNA 1 189 0 22 0 0 0 chr1 169316746 169316768 -73347585 + AT_rich Low_complexity Low_complexity 1 22 0 1921 91 8 0 chr1 169316816 169317068 -73347285 - AluSx SINE Alu -1 311 58 291 313 44 40 chr1 169317605 169317832 -73346521 - L2 LINE L2 -961 2353 2126 397 228 69 55 chr1 169317836 169317981 -73346372 + MER5A DNA MER1_type 21 167 -22 819 178 20 0 chr1 169320900 169321052 -73343301 - Tigger7 DNA MER2_type -417 316 162 1986 96 0 4 chr1 169321053 169321303 -73343050 + AluSg SINE Alu 54 302 -8 637 201 120 4 chr1 169321303 169321536 -73342817 + L1MC4 LINE L1 6961 7367 -675 * 739 253 59 10 chr1 169321532 169321734 -73342619 + L1MC4 LINE L1 6476 6687 -1355 3677 135 92 2 chr1 169321735 169322402 -73341951 + Tigger7 DNA MER2_type 11 2487 0 2214 216 93 47 chr1 169322402 169322741 -73341612 + L1MC4 LINE L1 6625 6947 -1095 2461 89 0 3 chr1 169322741 169323043 -73341310 + AluSg SINE Alu 1 301 -9 2214 216 93 47 chr1 169323043 169323917 -73340436 + L1MC4 LINE L1 6947 8041 -1 2133 125 0 0 chr1 169323919 169324250 -73340103 + AluSq SINE Alu 1 313 0 181 132 132 0 chr1 169324950 169324988 -73339365 + L2 LINE L2 3262 3304 -9 510 172 0 0 chr1 169325069 169325168 -73339185 + CT-rich Low_complexity Low_complexity 2 100 0 2134 144 0 0 chr1 169325169 169325481 -73338872 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 169325876 169325904 -73338449 + AT_rich Low_complexity Low_complexity 1 28 0 1684 194 24 18 chr1 169327672 169328007 -73336346 + MER58B DNA MER1_type 5 341 0 553 318 62 16 chr1 169328158 169328400 -73335953 + MIR SINE MIR 8 260 -2 2108 168 20 106 chr1 169329588 169330089 -73334264 - LTR32 LTR ERVL 0 471 14 2303 87 0 3 chr1 169330219 169330540 -73333813 - AluSq SINE Alu 0 320 1 2397 70 10 0 chr1 169330554 169330852 -73333501 + AluY SINE Alu 1 301 -10 671 262 55 31 chr1 169330890 169331180 -73333173 - L1MD2 LINE L1 -1 6358 6062 2413 213 53 11 chr1 169332112 169332680 -73331673 + L1ME1 LINE L1 5531 6122 -44 224 232 36 0 chr1 169333467 169333523 -73330830 + MIR SINE MIR 68 125 -137 2229 101 3 7 chr1 169333741 169334048 -73330305 - AluSq SINE Alu -7 306 1 365 254 53 9 chr1 169334251 169334365 -73329988 + MIR SINE MIR 107 225 -37 384 283 23 68 chr1 169334473 169334560 -73329793 - L2 LINE L2 -193 3079 3002 2316 57 0 11 chr1 169334560 169334843 -73329510 + AluY SINE Alu 32 311 0 384 283 23 68 chr1 169334843 169334932 -73329421 - L2 LINE L2 -270 3002 2911 877 168 7 0 chr1 169335019 169335162 -73329191 - Zaphod DNA AcHobo 0 4031 3888 447 292 67 8 chr1 169335196 169335454 -73328899 - MER115 DNA AcHobo -268 425 130 1846 131 0 0 chr1 169335920 169336179 -73328174 - AluJo SINE Alu -13 299 41 306 214 0 29 chr1 169336185 169336255 -73328098 - AluJo SINE Alu -149 153 86 2222 117 0 0 chr1 169336294 169336584 -73327769 - AluSx SINE Alu -22 290 1 325 290 32 13 chr1 169337424 169337579 -73326774 - MIR SINE MIR -3 259 102 1778 157 0 17 chr1 169337658 169337981 -73326372 + AluJo SINE Alu 1 318 0 23 33 0 0 chr1 169338139 169338169 -73326184 + AT_rich Low_complexity Low_complexity 1 30 0 367 269 134 30 chr1 169338860 169338909 -73325444 - MIR3 SINE MIR -7 201 159 763 201 118 0 chr1 169338909 169339078 -73325275 - MER5A DNA MER1_type 0 189 1 367 269 134 30 chr1 169339078 169339162 -73325191 - MIR3 SINE MIR -49 159 54 2331 173 43 16 chr1 169339171 169339615 -73324738 - L1MC4 LINE L1 -185 7857 7402 243 0 0 0 chr1 169339653 169339680 -73324673 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 309 51 0 0 chr1 169339702 169339741 -73324612 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1750 164 4 7 chr1 169339744 169340025 -73324328 - AluSx SINE Alu -32 280 1 2249 124 0 0 chr1 169340320 169340627 -73323726 - AluSq SINE Alu -6 307 1 371 296 7 21 chr1 169341484 169341626 -73322727 + MER20B DNA MER1_type 21 160 -623 2280 107 0 0 chr1 169343199 169343498 -73320855 + AluSx SINE Alu 1 299 -13 2060 139 0 23 chr1 169343643 169343952 -73320401 - AluSx SINE Alu -10 302 1 194 196 0 22 chr1 169344007 169344053 -73320300 + L2 LINE L2 3265 3309 -4 247 279 186 23 chr1 169344063 169344192 -73320161 + MIR3 SINE MIR 48 197 -11 418 345 78 31 chr1 169344287 169344669 -73319684 + L2 LINE L2 2853 3252 -61 598 281 30 0 chr1 169344683 169344847 -73319506 - MER91A DNA MER1_type -13 183 15 742 258 16 26 chr1 169344927 169345117 -73319236 - L1ME1 LINE L1 -5 6161 5974 2266 112 0 13 chr1 169346069 169346383 -73317970 - AluSg SINE Alu 0 310 1 240 35 0 0 chr1 169347009 169347038 -73317315 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2258 75 0 7 chr1 169347041 169347322 -73317031 - AluSg1 SINE Alu -30 279 1 2074 140 0 10 chr1 169347447 169347754 -73316599 + AluJb SINE Alu 1 304 -8 1615 192 30 91 chr1 169347923 169347988 -73316365 + MER63B DNA MER1_type 1 68 -994 2273 100 7 0 chr1 169347988 169348289 -73316064 - AluSx SINE Alu -9 303 1 1615 192 30 91 chr1 169348289 169348687 -73315666 + MER63B DNA MER1_type 68 436 0 1093 106 106 46 chr1 169348929 169349146 -73315207 - MER30 DNA MER1_type 0 230 1 2184 119 0 13 chr1 169349206 169349517 -73314836 + AluSx SINE Alu 1 307 -5 2650 141 36 0 chr1 169350680 169351091 -73313262 + MSTB LTR MaLR 1 426 0 310 285 126 13 chr1 169351482 169351633 -73312720 - MIR SINE MIR -31 231 64 282 215 31 0 chr1 169351675 169351740 -73312613 - L2 LINE L2 -1 3312 3246 284 246 0 0 chr1 169351831 169351888 -73312465 - MLT1L LTR MaLR 0 615 559 1112 270 166 19 chr1 169351888 169352321 -73312032 + MLT1J LTR MaLR 15 511 0 291 188 38 38 chr1 169352650 169352730 -73311623 - MLT1L LTR MaLR -421 194 115 492 187 52 7 chr1 169352750 169352905 -73311448 + CT-rich Low_complexity Low_complexity 2 163 0 1993 133 7 0 chr1 169352907 169353185 -73311168 - AluSx SINE Alu -32 280 1 2252 115 0 3 chr1 169353969 169354283 -73310070 + AluSq SINE Alu 1 313 0 207 0 0 0 chr1 169354540 169354563 -73309790 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 263 301 25 118 chr1 169354926 169354992 -73309361 + MER5A DNA MER1_type 1 72 -117 180 0 0 0 chr1 169354992 169355012 -73309341 + (TGG)n Simple_repeat Simple_repeat 1 20 0 263 301 25 118 chr1 169355012 169355028 -73309325 + MER5A DNA MER1_type 72 88 -101 1695 133 12 4 chr1 169355028 169355276 -73309077 + AluSx SINE Alu 47 296 -16 263 301 25 118 chr1 169355276 169355395 -73308958 + MER5A DNA MER1_type 88 184 -5 301 312 30 45 chr1 169355463 169355662 -73308691 - MIR SINE MIR -55 207 12 2415 103 0 0 chr1 169355712 169356024 -73308329 + AluSx SINE Alu 1 312 0 2229 77 29 32 chr1 169356356 169356669 -73307684 + AluSx SINE Alu 1 312 0 2095 122 0 46 chr1 169358455 169358783 -73305570 - AluSq SINE Alu 0 313 1 2238 107 0 23 chr1 169359998 169360306 -73304047 - AluSx SINE Alu -11 301 1 5216 69 38 0 chr1 169360340 169361006 -73303347 + LTR8 LTR ERV1 1 691 0 1981 136 10 7 chr1 169361106 169361407 -73302946 - AluJb SINE Alu -10 302 1 21 36 0 0 chr1 169361470 169361498 -73302855 + AT_rich Low_complexity Low_complexity 1 28 0 761 274 86 56 chr1 169361526 169361808 -73302545 - L1MC4a LINE L1 -134 5987 5688 2471 76 0 10 chr1 169361808 169362110 -73302243 - AluY SINE Alu -12 299 1 761 274 86 56 chr1 169362110 169362235 -73302118 - L1MC4a LINE L1 -433 5688 5568 277 214 0 71 chr1 169362799 169362869 -73301484 - L1ME4a LINE L1 -217 5904 5840 432 296 15 51 chr1 169362979 169363175 -73301178 + MIR SINE MIR 22 210 -52 2046 148 3 3 chr1 169363175 169363479 -73300874 - AluSx SINE Alu -8 304 1 191 298 85 52 chr1 169364600 169364741 -73299612 - L2 LINE L2 -412 2902 2748 490 258 22 45 chr1 169364741 169364919 -73299434 + MER5B DNA MER1_type 1 174 -4 191 298 85 52 chr1 169364919 169365025 -73299328 - L2 LINE L2 -566 2748 2647 2468 51 16 38 chr1 169365938 169366252 -73298101 - AluY SINE Alu -4 307 1 2532 66 0 7 chr1 169367171 169367474 -73296879 + AluSc SINE Alu 1 301 -8 595 262 20 35 chr1 169368537 169368739 -73295614 - MIR SINE MIR -36 226 28 2286 100 0 0 chr1 169369623 169369912 -73294441 + AluSx SINE Alu 2 290 -22 1132 136 128 33 chr1 169370258 169370501 -73293852 + AluJo SINE Alu 35 300 -12 519 250 0 57 chr1 169370520 169370660 -73293693 + MLT1E LTR MaLR 17 148 -445 1827 159 17 0 chr1 169370667 169370956 -73293397 - AluJo SINE Alu -18 294 1 8116 139 34 19 chr1 169371021 169372445 -73291908 - L1MCa LINE L1 -4957 1469 24 971 264 37 69 chr1 169372445 169372824 -73291529 + MLT1E LTR MaLR 203 569 -24 191 309 15 0 chr1 169373299 169373367 -73290986 - L3b LINE CR1 -237 1346 1278 2018 60 0 45 chr1 169373755 169374020 -73290333 + AluY SINE Alu 42 294 -17 4146 159 57 15 chr1 169374020 169374763 -73289590 + MER21B LTR ERV1 89 862 -1 2050 145 0 0 chr1 169376131 169376420 -73287933 + AluSx SINE Alu 1 289 -23 30 0 0 0 chr1 169376420 169376450 -73287903 + AT_rich Low_complexity Low_complexity 1 30 0 239 261 98 0 chr1 169378468 169378560 -73285793 - MIR SINE MIR -10 252 152 7250 50 13 3 chr1 169378618 169379672 -73284681 - L1PA6 LINE L1 -1 6153 5092 469 255 11 0 chr1 169380926 169381020 -73283333 - MER81 DNA DNA 0 114 20 6242 143 36 5 chr1 169381235 169382592 -73281761 + L1MA5A LINE L1 4146 5541 -743 589 112 0 11 chr1 169382595 169382682 -73281671 - L1M3 LINE L1 -558 5610 5523 4377 106 36 44 chr1 169382682 169383436 -73280917 + L1MA5A LINE L1 5544 6292 -5 2218 118 0 0 chr1 169384679 169384967 -73279386 - AluSx SINE Alu -22 290 3 247 237 74 46 chr1 169384981 169385123 -73279230 - HAL1b LINE L1 -1 6120 1204 1733 139 0 23 chr1 169385198 169385457 -73278896 + AluSx SINE Alu 3 255 -57 231 294 59 0 chr1 169385457 169385525 -73278828 - L2 LINE L2 -12 3260 3189 651 246 45 36 chr1 169385555 169385775 -73278578 - MIR SINE MIR -6 256 35 2204 123 3 3 chr1 169386834 169387135 -73277218 + AluSx SINE Alu 1 301 -11 390 319 56 6 chr1 169387151 169387311 -73277042 + MIR SINE MIR 20 187 -75 1872 147 27 7 chr1 169388151 169388451 -73275902 + MER44D DNA MER2_type 2 577 -32 180 0 0 0 chr1 169388819 169388839 -73275514 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 691 135 10 0 chr1 169388857 169388961 -73275392 - AluJb SINE Alu -206 106 2 558 264 96 6 chr1 169392350 169392517 -73271836 - MER20 DNA MER1_type -37 182 1 950 284 60 67 chr1 169393674 169394294 -73270059 - L1ME3A LINE L1 -15 6155 5541 1502 154 121 11 chr1 169394294 169394566 -73269787 + AluJo SINE Alu 1 302 -10 950 284 60 67 chr1 169394566 169394780 -73269573 - L1ME3A LINE L1 -629 5541 5327 2102 139 0 19 chr1 169396078 169396387 -73267966 + AluSx SINE Alu 1 303 -9 24 53 0 0 chr1 169396416 169396454 -73267899 + AT_rich Low_complexity Low_complexity 1 38 0 4015 178 92 29 chr1 169396740 169397476 -73266877 + L1MD2 LINE L1 5373 6163 -196 252 0 0 0 chr1 169397476 169397504 -73266849 + (CA)n Simple_repeat Simple_repeat 1 28 0 4015 178 92 29 chr1 169397504 169397712 -73266641 + L1MD2 LINE L1 6163 6357 -2 275 306 47 0 chr1 169398985 169399070 -73265283 + MIR SINE MIR 63 151 -57 2136 98 4 4 chr1 169399090 169399390 -73264963 - AluSc SINE Alu 0 303 4 430 286 9 0 chr1 169399392 169399497 -73264856 + MIR SINE MIR 40 145 -117 343 252 149 0 chr1 169399497 169399604 -73264749 + MLT1J LTR MaLR 2 124 -387 1738 146 65 16 chr1 169399607 169399930 -73264423 + L1M4 LINE L1 715 1053 -5489 368 120 0 0 chr1 169399931 169399981 -73264372 + Alu SINE Alu 1 50 -251 1595 122 13 4 chr1 169399981 169400210 -73264143 - AluSq SINE Alu -82 231 1 22 35 0 0 chr1 169400213 169400242 -73264111 + AT_rich Low_complexity Low_complexity 1 29 0 1158 74 0 0 chr1 169400289 169400424 -73263929 + AluSx SINE Alu 1 135 -178 2227 116 3 0 chr1 169400424 169400717 -73263636 + AluSg SINE Alu 1 294 -16 316 110 49 12 chr1 169400717 169400799 -73263554 + (TA)n Simple_repeat Simple_repeat 2 86 0 215 127 55 0 chr1 169400823 169400878 -73263475 + (TA)n Simple_repeat Simple_repeat 1 58 0 1056 141 51 0 chr1 169400878 169401034 -73263319 + AluSx SINE Alu 135 298 -14 780 159 15 15 chr1 169401063 169401195 -73263158 + FLAM_C SINE Alu 2 133 0 229 161 18 0 chr1 169401196 169401252 -73263101 + L1M4 LINE L1 1238 1294 -5248 474 82 0 0 chr1 169401253 169401314 -73263039 + Alu SINE Alu 2 62 -248 2244 108 0 0 chr1 169451319 169451624 -73212729 - AluSc SINE Alu -4 305 1 1872 158 20 0 chr1 169451630 169451927 -73212426 - AluJb SINE Alu -9 303 1 1473 196 66 9 chr1 169451927 169452274 -73212079 + L1MC/D LINE L1 5411 5777 -2031 2008 186 104 28 chr1 169452275 169452744 -73211609 + MLT1D LTR MaLR 1 505 0 834 157 73 0 chr1 169452744 169452922 -73211431 + L1MD3 LINE L1 7783 7973 -22 2050 194 98 11 chr1 169453064 169453523 -73210830 + L1ME1 LINE L1 5659 6157 -9 245 213 50 0 chr1 169453726 169453806 -73210547 + (TATAA)n Simple_repeat Simple_repeat 3 86 0 259 267 0 70 chr1 169453918 169454004 -73210349 - MER5A DNA MER1_type -28 161 82 205 261 85 69 chr1 169453939 169454069 -73210284 + MER5A DNA MER1_type 55 186 -3 * 24 53 0 0 chr1 169455342 169455380 -73208973 + AT_rich Low_complexity Low_complexity 1 38 0 192 163 0 0 chr1 169455548 169455591 -73208762 + T-rich Low_complexity Low_complexity 1 43 0 419 287 0 9 chr1 169455749 169455857 -73208496 + MIR SINE MIR 5 111 -151 905 166 195 0 chr1 169455857 169456062 -73208291 - MSTA LTR MaLR 0 428 184 399 167 42 52 chr1 169456063 169456159 -73208194 + THE1C LTR MaLR 67 161 -214 182 321 50 83 chr1 169456218 169456436 -73207917 - L2 LINE L2 -85 3187 2977 3617 136 16 3 chr1 169457265 169458099 -73206254 + L1P5 LINE L1 4938 5782 -369 2362 71 0 3 chr1 169458210 169458504 -73205849 + AluY SINE Alu 1 293 -18 189 321 163 25 chr1 169458596 169458792 -73205561 + L2 LINE L2 1870 2092 -1222 386 296 130 41 chr1 169459159 169459328 -73205025 - MIR SINE MIR -62 200 17 360 216 73 106 chr1 169459383 169459628 -73204725 + L1ME4a LINE L1 5593 5829 -292 1593 142 113 25 chr1 169459628 169459903 -73204450 + AluJo SINE Alu 1 299 -13 1084 226 152 3 chr1 169460020 169460317 -73204036 - MER2 DNA MER2_type 0 344 4 3688 109 79 28 chr1 169460634 169461699 -73202654 + MER11A LTR ERVK 1 1236 0 519 279 136 29 chr1 169461740 169462152 -73202201 - HAL1 LINE L1 -409 2098 1643 342 198 101 93 chr1 169462234 169462492 -73201861 - HAL1 LINE L1 -1027 1480 1221 375 291 62 35 chr1 169462614 169462905 -73201448 - L1MEd LINE L1 -4864 1255 976 827 276 118 7 chr1 169463192 169463489 -73200864 + MER46C DNA MER2_type 8 337 -1 343 368 97 32 chr1 169463999 169464379 -73199974 + L2 LINE L2 2569 2973 -341 197 326 95 68 chr1 169464582 169464729 -73199624 + L2 LINE L2 3122 3272 0 208 212 61 30 chr1 169464782 169464848 -73199505 + MIR3 SINE MIR 134 201 -7 2221 98 0 26 chr1 169465226 169465533 -73198820 - AluSg SINE Alu -11 299 1 1275 212 85 100 chr1 169465733 169465778 -73198575 + L1ME3 LINE L1 5552 5596 -566 1709 169 0 33 chr1 169465778 169466079 -73198274 - AluJb SINE Alu -21 291 1 1275 212 85 100 chr1 169466079 169466623 -73197730 + L1ME3 LINE L1 5596 6132 -30 1206 189 46 74 chr1 169466691 169466826 -73197527 + AluJo SINE Alu 1 138 -174 198 103 0 0 chr1 169466826 169466855 -73197498 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1206 189 46 74 chr1 169466855 169467004 -73197349 + AluJo SINE Alu 138 277 -35 312 91 0 0 chr1 169467006 169467050 -73197303 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 2496 64 0 0 chr1 169467296 169467593 -73196760 - AluY SINE Alu -14 297 1 835 234 67 60 chr1 169467892 169468174 -73196179 + MLT1J2 LTR MaLR 1 284 -166 1047 149 0 0 chr1 169469390 169469538 -73194815 - AluSg/x SINE Alu -27 283 136 2410 93 3 0 chr1 169469698 169470010 -73194343 - AluSp SINE Alu 0 313 1 1151 179 30 0 chr1 169470010 169470245 -73194108 - L1MC1 LINE L1 -5 6328 6087 11069 128 164 30 chr1 169470249 169471140 -73193213 - Tigger1 DNA MER2_type 0 2418 1648 2289 86 3 3 chr1 169471140 169471432 -73192921 + AluSx SINE Alu 1 292 -20 11069 128 164 30 chr1 169471432 169472101 -73192252 - Tigger1 DNA MER2_type -770 1648 1070 1730 160 61 0 chr1 169472101 169472395 -73191958 + AluJb SINE Alu 1 312 0 11069 128 164 30 chr1 169472395 169472565 -73191788 - Tigger1 DNA MER2_type -1348 1070 924 2290 165 24 21 chr1 169472565 169472990 -73191363 + MSTB LTR MaLR 1 426 0 11069 128 164 30 chr1 169472990 169473389 -73190964 - Tigger1 DNA MER2_type -1494 924 1 3753 137 8 8 chr1 169473389 169474016 -73190337 - L1MC1 LINE L1 -410 5923 5297 3005 232 43 12 chr1 169473993 169475285 -73189068 - L1MCa LINE L1 -2989 3437 2101 * 23 0 0 0 chr1 169475490 169475513 -73188840 + AT_rich Low_complexity Low_complexity 1 23 0 788 291 141 64 chr1 169475861 169476796 -73187557 - L2 LINE L2 0 3272 2238 28 0 0 0 chr1 169476958 169476986 -73187367 + AT_rich Low_complexity Low_complexity 1 28 0 183 346 117 12 chr1 169477764 169477926 -73186427 + MIR3 SINE MIR 30 208 0 22 0 0 0 chr1 169477962 169477984 -73186369 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 169478023 169478066 -73186287 + AT_rich Low_complexity Low_complexity 1 43 0 212 119 0 24 chr1 169478493 169478535 -73185818 + (TA)n Simple_repeat Simple_repeat 2 42 0 288 265 44 0 chr1 169478836 169478904 -73185449 + MER5A DNA MER1_type 10 80 -109 2032 102 33 0 chr1 169479401 169479704 -73184649 + AluSx SINE Alu 1 312 0 301 239 136 0 chr1 169480284 169480321 -73184032 + L2 LINE L2 3200 3231 -82 180 0 0 0 chr1 169480321 169480341 -73184012 + (TTG)n Simple_repeat Simple_repeat 2 21 0 301 239 136 0 chr1 169480341 169480391 -73183962 + L2 LINE L2 3231 3299 -14 2001 112 20 10 chr1 169481036 169481331 -73183022 + AluSg1 SINE Alu 1 298 -11 2029 236 36 45 chr1 169481713 169482375 -73181978 - L1MC4 LINE L1 -1 8041 7386 426 229 25 0 chr1 169482411 169482533 -73181820 - L1MC4a LINE L1 -1330 6478 6354 3256 232 33 25 chr1 169482545 169483287 -73181066 - L1ME2 LINE L1 -13 6151 5392 4259 139 19 27 chr1 169483287 169484027 -73180326 - MER50 LTR ERV1 0 734 1 3256 232 33 25 chr1 169484027 169484460 -73179893 - L1ME2 LINE L1 -772 5392 4964 23 0 0 0 chr1 169487251 169487274 -73177079 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr1 169487576 169487605 -73176748 + AT_rich Low_complexity Low_complexity 1 29 0 309 118 0 0 chr1 169488330 169488381 -73175972 + (TG)n Simple_repeat Simple_repeat 1 51 0 2381 98 0 0 chr1 169489492 169489799 -73174554 - AluSx SINE Alu -5 307 1 508 275 104 25 chr1 169489802 169489995 -73174358 - MIR SINE MIR -48 214 5 273 271 62 73 chr1 169489991 169490168 -73174185 - L2 LINE L2 -963 2351 2177 * 2071 171 98 26 chr1 169490367 169490439 -73173914 - L1MB8 LINE L1 0 6178 6113 1691 117 50 0 chr1 169490439 169490737 -73173616 - L1MB3 LINE L1 -2 6181 5869 2071 171 98 26 chr1 169490737 169491166 -73173187 - L1MB8 LINE L1 -65 6113 5641 38 0 0 0 chr1 169492671 169492709 -73171644 + AT_rich Low_complexity Low_complexity 1 38 0 243 180 0 0 chr1 169493629 169493679 -73170674 + T-rich Low_complexity Low_complexity 5 54 0 24 0 0 0 chr1 169493810 169493834 -73170519 + AT_rich Low_complexity Low_complexity 1 24 0 934 210 179 33 chr1 169494759 169495150 -73169203 - L1MDb LINE L1 -4135 2271 1824 562 26 0 26 chr1 169495159 169495237 -73169116 + (TC)n Simple_repeat Simple_repeat 1 76 0 413 155 0 71 chr1 169495240 169495324 -73169029 - AluJ/FLAM SINE Alu -234 78 1 560 173 38 38 chr1 169495324 169495457 -73168896 - L1MDb LINE L1 -4897 1509 1377 767 165 8 0 chr1 169495458 169495585 -73168768 - AluJb SINE Alu -17 295 168 2472 241 60 49 chr1 169495588 169496623 -73167730 - L1MDb LINE L1 -5248 1161 3 2410 92 0 0 chr1 169496960 169497266 -73167087 - AluSg SINE Alu -4 306 1 29552 117 38 34 chr1 169497284 169503425 -73160928 - L1PA8 LINE L1 0 6172 12 219 330 42 17 chr1 169503563 169503681 -73160672 - MIR3 SINE MIR -32 176 56 * 234 167 77 103 chr1 169503620 169503698 -73160655 + MIR SINE MIR 164 239 -23 216 329 56 33 chr1 169503799 169503957 -73160396 + MIR SINE MIR 32 191 -60 203 220 0 20 chr1 169504405 169504455 -73159898 - L2 LINE L2 -1 3312 3264 24 32 0 0 chr1 169504914 169504945 -73159408 + AT_rich Low_complexity Low_complexity 1 31 0 607 358 66 52 chr1 169505470 169505682 -73158671 + L2 LINE L2 2418 2626 -646 1992 218 15 19 chr1 169505682 169506151 -73158202 - MLT1C LTR MaLR 0 467 1 607 358 66 52 chr1 169506151 169506213 -73158140 + L2 LINE L2 2626 2686 -586 3009 69 44 9 chr1 169506213 169506645 -73157708 - LTR7 LTR ERV1 -2 448 2 607 358 66 52 chr1 169506645 169507031 -73157322 + L2 LINE L2 2686 3079 -193 631 288 90 35 chr1 169507124 169507412 -73156941 + L1MB8 LINE L1 11 314 -6545 1665 241 68 83 chr1 169507440 169508831 -73155522 + L1MB8 LINE L1 1847 3208 -3749 * 3735 214 55 24 chr1 169508829 169509402 -73154951 + L1MB8 LINE L1 4544 5098 -1859 2159 104 3 7 chr1 169509402 169509700 -73154653 - AluSx SINE Alu -15 297 1 3735 214 55 24 chr1 169509700 169510150 -73154203 + L1MB8 LINE L1 5098 5602 -1355 276 30 0 0 chr1 169510150 169510183 -73154170 + (TG)n Simple_repeat Simple_repeat 2 34 0 3735 214 55 24 chr1 169510183 169510197 -73154156 + L1MB8 LINE L1 5602 5614 -1343 1881 142 16 26 chr1 169510282 169510592 -73153761 + AluJb SINE Alu 1 307 -5 4141 177 47 25 chr1 169510605 169510739 -73153614 + L1MB8 LINE L1 5869 5999 -990 2226 94 3 3 chr1 169510739 169511038 -73153315 + AluY SINE Alu 1 299 -12 4141 177 47 25 chr1 169511038 169511846 -73152507 + L1MB8 LINE L1 5999 6843 -146 2359 22 0 11 chr1 169511846 169512124 -73152229 - AluY SINE Alu -2 309 35 4141 177 47 25 chr1 169512124 169512270 -73152083 + L1MB8 LINE L1 6843 6984 -5 1293 196 56 14 chr1 169512305 169512590 -73151763 - AluJb SINE Alu -14 298 2 2451 68 3 7 chr1 169512798 169513108 -73151245 + AluSg1 SINE Alu 1 309 0 432 0 0 0 chr1 169513110 169513158 -73151195 + (TA)n Simple_repeat Simple_repeat 2 49 0 2003 95 32 11 chr1 169514386 169514671 -73149682 + AluSg1 SINE Alu 5 295 -14 22 0 0 0 chr1 169515536 169515558 -73148795 + AT_rich Low_complexity Low_complexity 1 22 0 1008 255 28 16 chr1 169516002 169516249 -73148104 - MIR SINE MIR 0 262 13 250 256 0 58 chr1 169516275 169516361 -73147992 - MIR SINE MIR 0 262 182 669 198 0 9 chr1 169516480 169516596 -73147757 - FLAM_A SINE Alu -18 115 1 442 244 34 68 chr1 169516886 169517062 -73147291 - HAL1 LINE L1 -11 2496 2327 1930 241 18 84 chr1 169517224 169517831 -73146522 - MER21B LTR ERV1 -294 569 3 994 135 0 0 chr1 169517993 169518141 -73146212 - AluSg/x SINE Alu -7 305 158 538 264 11 29 chr1 169518170 169518344 -73146009 - MIR SINE MIR 0 262 92 2987 230 76 9 chr1 169518358 169519166 -73145187 - L1ME3A LINE L1 -5 6165 5303 4396 107 16 6 chr1 169519227 169519865 -73144488 - LTR9B LTR ERV1 0 644 1 533 261 155 40 chr1 169519908 169520352 -73144001 - HAL1 LINE L1 -90 2417 1923 723 97 114 0 chr1 169520362 169520476 -73143877 - AluSg/x SINE Alu -13 299 173 274 100 25 0 chr1 169520476 169520516 -73143837 - AluY SINE Alu -214 87 47 523 265 128 20 chr1 169520544 169520748 -73143605 - HAL1 LINE L1 -590 1917 1692 1208 202 66 49 chr1 169520789 169520927 -73143426 + AluJo SINE Alu 1 135 -167 2400 84 0 0 chr1 169520927 169521224 -73143129 + AluSc SINE Alu 1 297 -12 1208 202 66 49 chr1 169521224 169521372 -73142981 + AluJo SINE Alu 135 292 -10 518 233 0 33 chr1 169521377 169521497 -73142856 - FLAM_A SINE Alu -17 116 1 3838 245 135 42 chr1 169521591 169521725 -73142628 - HAL1 LINE L1 -656 1851 1731 1496 196 43 46 chr1 169521725 169522097 -73142256 + MLT1A2 LTR MaLR 4 374 0 3838 245 135 42 chr1 169522097 169522126 -73142227 - HAL1 LINE L1 -776 1731 1706 4083 79 18 2 chr1 169522126 169522671 -73141682 + MER41A LTR ERV1 1 554 0 3838 245 135 42 chr1 169522671 169524193 -73140160 - HAL1 LINE L1 -801 1706 8 491 300 33 81 chr1 169524349 169524709 -73139644 + L2 LINE L2 2627 2969 -345 287 341 81 12 chr1 169524807 169524980 -73139373 + L2 LINE L2 3120 3304 -9 386 344 81 0 chr1 169525016 169525176 -73139177 + MIR3 SINE MIR 19 191 -17 2138 120 3 13 chr1 169525386 169525685 -73138668 + AluSx SINE Alu 1 296 -16 1879 160 0 13 chr1 169527323 169527630 -73136723 - AluJb SINE Alu -9 303 1 21 36 0 0 chr1 169527719 169527747 -73136606 + AT_rich Low_complexity Low_complexity 1 28 0 624 207 79 0 chr1 169527932 169528072 -73136281 - FAM SINE Alu -22 163 13 985 189 6 0 chr1 169529251 169529415 -73134938 - AluJ SINE Alu -11 301 137 954 161 7 0 chr1 169529560 169529709 -73134644 - AluJ SINE Alu -162 150 1 3799 107 18 16 chr1 169530177 169530738 -73133615 - MER61E LTR ERV1 -4 565 4 237 302 62 31 chr1 169531800 169531896 -73132457 + Charlie1 DNA MER1_type 1 99 -2662 * 4166 181 33 31 chr1 169531892 169532839 -73131514 + Charlie1 DNA MER1_type 1813 2761 0 1608 280 44 24 chr1 169536269 169536766 -73127587 - LTR33 LTR ERVL -14 507 1 274 284 0 14 chr1 169537198 169537272 -73127081 + CT-rich Low_complexity Low_complexity 2 74 0 2897 16 0 0 chr1 169537355 169537671 -73126682 - AluYb8 SINE Alu -2 316 1 29 28 0 0 chr1 169537797 169537833 -73126520 + AT_rich Low_complexity Low_complexity 1 36 0 3070 264 146 19 chr1 169538239 169538667 -73125686 + L2 LINE L2 109 482 -2832 2298 91 0 3 chr1 169538667 169538963 -73125390 - AluSq SINE Alu -18 295 1 3070 264 146 19 chr1 169538963 169539601 -73124752 + L2 LINE L2 482 1312 -2002 292 184 178 113 chr1 169539601 169539721 -73124632 - MER5C DNA MER1_type -1 323 185 3373 95 27 21 chr1 169539721 169540237 -73124116 + L1PB1 LINE L1 5628 6146 -5 292 184 178 113 chr1 169540237 169540301 -73124052 - MER5C DNA MER1_type -139 185 127 367 181 64 43 chr1 169540416 169540510 -73123843 - MER5C DNA MER1_type -226 98 3 1012 351 274 40 chr1 169540538 169540894 -73123459 + L2 LINE L2 1317 1589 -1725 2140 83 0 0 chr1 169540894 169541158 -73123195 - AluSx SINE Alu -4 308 45 1012 351 274 40 chr1 169541158 169541541 -73122812 + L2 LINE L2 1589 1881 -1433 817 145 0 0 chr1 169541541 169541658 -73122695 - FLAM_C SINE Alu -16 117 1 1012 351 274 40 chr1 169541658 169541838 -73122515 + L2 LINE L2 1881 2452 -862 * 1399 256 32 47 chr1 169541835 169542300 -73122053 + L2 LINE L2 2853 3310 -3 620 176 0 0 chr1 169542586 169542694 -73121659 + L1MB5 LINE L1 6057 6164 -10 2429 84 0 3 chr1 169542709 169543019 -73121334 - AluY SINE Alu -2 309 1 497 352 102 11 chr1 169543267 169543531 -73120822 - L2 LINE L2 -437 2877 2590 2237 114 0 3 chr1 169543798 169544104 -73120249 + AluSg SINE Alu 1 305 -5 196 320 15 105 chr1 169545542 169545742 -73118611 + L2 LINE L2 2805 2986 -286 231 370 31 68 chr1 169545931 169546123 -73118230 - L2 LINE L2 -223 3049 2865 330 397 34 19 chr1 169546389 169546598 -73117755 - L2 LINE L2 -553 2761 2550 183 162 0 0 chr1 169546642 169546679 -73117674 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 1492 86 24 0 chr1 169547311 169547520 -73116833 - L1PA8A LINE L1 -27 6104 5891 272 130 0 22 chr1 169547520 169547566 -73116787 + MER5B DNA MER1_type 128 172 -6 931 171 21 11 chr1 169547634 169547821 -73116532 - MER5A DNA MER1_type 0 189 1 210 143 0 0 chr1 169548075 169548110 -73116243 + (TG)n Simple_repeat Simple_repeat 2 36 0 302 211 42 0 chr1 169548112 169548183 -73116170 + L1MCa LINE L1 1995 2068 -4358 234 208 0 0 chr1 169548187 169548240 -73116113 + (TA)n Simple_repeat Simple_repeat 1 53 0 1627 169 13 29 chr1 169548401 169548708 -73115645 - AluJo SINE Alu -10 302 1 2087 125 7 10 chr1 169548712 169549017 -73115336 - AluSq SINE Alu -9 304 1 2348 81 0 17 chr1 169549375 169549673 -73114680 + AluSq SINE Alu 12 304 -9 223 229 0 0 chr1 169550703 169550751 -73113602 + MIR SINE MIR 125 172 -90 2336 94 3 0 chr1 169551540 169551839 -73112514 - AluSc SINE Alu -9 300 1 2121 126 3 0 chr1 169553482 169553776 -73110577 - AluSx SINE Alu -17 295 1 1026 316 71 86 chr1 169554366 169554844 -73109509 + L1M4 LINE L1 4299 4783 -1363 1931 105 86 0 chr1 169554844 169555111 -73109242 + AluSg SINE Alu 4 293 -17 1026 316 71 86 chr1 169555111 169555442 -73108911 + L1M4 LINE L1 4783 5093 -1053 1561 128 13 0 chr1 169555442 169555669 -73108684 + MER30 DNA MER1_type 1 230 0 1026 316 71 86 chr1 169555669 169555849 -73108504 + L1M4 LINE L1 5093 5274 -872 988 207 13 35 chr1 169555914 169556141 -73108212 + L1ME3A LINE L1 5887 6108 -62 493 330 14 45 chr1 169556265 169556323 -73108030 - L2 LINE L2 -1334 1980 1922 1859 176 7 3 chr1 169556323 169556625 -73107728 + AluJb SINE Alu 1 303 -9 493 330 14 45 chr1 169556625 169556787 -73107566 - L2 LINE L2 -1392 1922 1767 4685 154 14 2 chr1 169556787 169557588 -73106765 + L1 LINE L1 4044 4853 -1293 1327 270 116 22 chr1 169557588 169558080 -73106273 - L2 LINE L2 -799 2515 1978 5971 19 0 0 chr1 169558186 169558880 -73105473 - L1PA2 LINE L1 -208 5947 5254 1745 37 18 0 chr1 169558892 169559109 -73105244 + L1PA2 LINE L1 5935 6155 0 40 37 0 0 chr1 169559321 169559375 -73104978 + AT_rich Low_complexity Low_complexity 1 54 0 30 0 0 0 chr1 169560121 169560151 -73104202 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 169560546 169560567 -73103786 + AT_rich Low_complexity Low_complexity 1 21 0 1138 186 0 40 chr1 169560621 169560847 -73103506 - AluJb SINE Alu -11 301 85 334 323 127 0 chr1 169562819 169562977 -73101376 + MER91B DNA MER1_type 1 178 -12 461 259 196 23 chr1 169563195 169563320 -73101033 + HAL1 LINE L1 16 118 -2389 396 40 0 0 chr1 169563320 169563370 -73100983 + (CA)n Simple_repeat Simple_repeat 1 50 0 461 259 196 23 chr1 169563370 169564928 -73099425 + HAL1 LINE L1 118 2066 -441 909 240 20 10 chr1 169564978 169565182 -73099171 - MIR SINE MIR -52 210 5 1001 237 64 32 chr1 169565223 169565569 -73098784 + HAL1 LINE L1 2127 2483 -24 1230 129 0 0 chr1 169565571 169565741 -73098612 - FRAM SINE Alu -11 165 1 185 0 40 0 chr1 169566861 169566886 -73097467 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 42036 39 21 1 chr1 169566886 169572901 -73091452 - L1PA2 LINE L1 -16 6139 2 2198 104 0 10 chr1 169573161 169573468 -73090885 - AluSx SINE Alu -8 304 1 22 0 0 0 chr1 169573470 169573492 -73090861 + AT_rich Low_complexity Low_complexity 1 22 0 1056 136 5 45 chr1 169573576 169573774 -73090579 - AluJo SINE Alu 0 312 123 1474 92 5 0 chr1 169573789 169573974 -73090379 + AluSx SINE Alu 1 186 -126 3705 160 79 30 chr1 169574596 169575388 -73088965 - L1MB7 LINE L1 -53 6131 5295 2185 72 14 4 chr1 169575388 169575709 -73088644 - AluY SINE Alu 0 324 1 3705 160 79 30 chr1 169575709 169575741 -73088612 - L1MB7 LINE L1 -889 5295 5266 539 52 103 0 chr1 169575741 169575896 -73088457 + (TA)n Simple_repeat Simple_repeat 2 172 0 318 96 81 7 chr1 169575911 169576047 -73088306 + (TA)n Simple_repeat Simple_repeat 1 146 0 1987 125 29 0 chr1 169576047 169576326 -73088027 - AluSx SINE Alu -25 287 1 2627 225 76 18 chr1 169576327 169576412 -73087941 - L1MB7 LINE L1 -865 5281 5202 2037 133 10 0 chr1 169576412 169576705 -73087648 - AluSg SINE Alu -9 301 6 2627 225 76 18 chr1 169576705 169577465 -73086888 - L1MB7 LINE L1 -944 5202 4387 775 129 0 0 chr1 169577475 169577599 -73086754 + L1MC4 LINE L1 7919 8042 0 384 22 0 0 chr1 169577926 169577971 -73086382 + (TG)n Simple_repeat Simple_repeat 2 46 0 369 0 0 0 chr1 169578270 169578311 -73086042 + (TG)n Simple_repeat Simple_repeat 2 42 0 1050 180 32 0 chr1 169578429 169578618 -73085735 - MER2 DNA MER2_type -150 195 1 321 291 0 0 chr1 169578628 169578714 -73085639 + (TATATG)n Simple_repeat Simple_repeat 3 88 0 1665 159 66 3 chr1 169578722 169579023 -73085330 - MER2 DNA MER2_type -25 320 1 365 278 0 26 chr1 169579183 169579298 -73085055 - MIR3 SINE MIR -16 192 81 778 200 6 50 chr1 169580949 169581109 -73083244 - Tigger2 DNA MER2_type 0 2718 2566 1051 174 5 46 chr1 169581110 169581329 -73083024 - Tigger2 DNA MER2_type -2508 210 1 22 0 0 0 chr1 169583792 169583814 -73080539 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 169584187 169584209 -73080144 + AT_rich Low_complexity Low_complexity 1 22 0 2647 202 21 10 chr1 169585922 169586505 -73077848 - MER20B DNA MER1_type 0 783 195 255 277 60 0 chr1 169586613 169586696 -73077657 - MER20B DNA MER1_type -695 88 1 257 297 97 69 chr1 169588464 169588609 -73075744 + MIR3 SINE MIR 32 180 -28 387 0 0 0 chr1 169588882 169588925 -73075428 + (TG)n Simple_repeat Simple_repeat 1 43 0 5409 107 25 37 chr1 169589000 169589949 -73074404 - L1PB3 LINE L1 -7 6147 5212 317 275 44 0 chr1 169589949 169590040 -73074313 - MER117 DNA MER1_type -73 124 30 237 119 0 0 chr1 169590081 169590123 -73074230 + (GA)n Simple_repeat Simple_repeat 1 42 0 1645 160 4 14 chr1 169590127 169590402 -73073951 - AluJo SINE Alu -40 272 1 404 363 151 21 chr1 169590807 169591239 -73073114 - L2 LINE L2 -8 3305 2818 24 32 0 0 chr1 169591702 169591733 -73072620 + AT_rich Low_complexity Low_complexity 1 31 0 289 301 39 77 chr1 169592437 169592564 -73071789 - MIR SINE MIR -16 246 125 884 203 45 20 chr1 169592564 169592766 -73071587 + MER63A DNA MER1_type 4 210 0 289 301 39 77 chr1 169592766 169592794 -73071559 - MIR SINE MIR -137 125 97 239 337 11 0 chr1 169592917 169593006 -73071347 + GA-rich Low_complexity Low_complexity 3 92 0 1380 173 13 77 chr1 169593815 169594115 -73070238 + AluJb SINE Alu 1 281 -31 351 0 0 0 chr1 169594115 169594154 -73070199 + (CA)n Simple_repeat Simple_repeat 1 39 0 684 257 20 0 chr1 169594407 169594609 -73069744 - L1M4 LINE L1 -2751 3395 3190 6924 156 42 37 chr1 169594627 169594823 -73069530 - L1MC3 LINE L1 -2 7852 7658 1623 70 0 0 chr1 169594823 169595022 -73069331 - AluY SINE Alu -16 295 97 6924 156 42 37 chr1 169595022 169596259 -73068094 - L1MC3 LINE L1 -196 7658 6412 1802 136 42 72 chr1 169596259 169596590 -73067763 - MER1B DNA MER1_type 0 339 19 6580 209 50 40 chr1 169596593 169598961 -73065392 - L1MC3 LINE L1 -743 5472 4009 302 160 0 40 chr1 169598961 169599036 -73065317 - L1PA14 LINE L1 -3 6158 6087 6580 209 50 40 chr1 169599036 169599887 -73064466 - L1MC3 LINE L1 -2206 4009 3168 1672 278 81 71 chr1 169599891 169600269 -73064084 - L1MC3 LINE L1 -4701 1695 1322 1691 156 6 53 chr1 169600269 169600590 -73063763 - AluJo SINE Alu -6 306 1 1672 278 81 71 chr1 169600590 169601225 -73063128 - L1MC3 LINE L1 -5074 1322 695 508 252 113 20 chr1 169601225 169601376 -73062977 - FRAM SINE Alu -1 165 1 1672 278 81 71 chr1 169601376 169602001 -73062352 - L1MC3 LINE L1 -5701 695 40 455 156 67 167 chr1 169603425 169603605 -73060748 + MER20B DNA MER1_type 54 215 -4 842 229 110 0 chr1 169604750 169604995 -73059358 - MER5C DNA MER1_type -50 274 3 199 291 0 18 chr1 169605082 169605137 -73059216 + L2 LINE L2 3020 3073 -199 245 266 47 0 chr1 169605236 169605300 -73059053 + L2 LINE L2 3205 3271 -1 29 28 0 0 chr1 169605861 169605897 -73058456 + AT_rich Low_complexity Low_complexity 1 36 0 29 47 0 0 chr1 169606882 169606925 -73057428 + AT_rich Low_complexity Low_complexity 1 43 0 198 167 0 0 chr1 169607024 169607060 -73057293 + CT-rich Low_complexity Low_complexity 5 40 0 219 77 39 19 chr1 169608014 169608066 -73056287 + T-rich Low_complexity Low_complexity 2 54 0 233 325 24 0 chr1 169608578 169608661 -73055692 - MIR SINE MIR -68 140 56 275 241 304 0 chr1 169609000 169609112 -73055241 + MIR SINE MIR 117 262 0 25 0 0 0 chr1 169609637 169609662 -73054691 + AT_rich Low_complexity Low_complexity 1 25 0 783 296 57 29 chr1 169609754 169609885 -73054468 + L1ME3A LINE L1 5180 5306 -856 1132 214 56 39 chr1 169609885 169610222 -73054131 - MER2 DNA MER2_type -1 343 1 783 296 57 29 chr1 169610222 169610494 -73053859 + L1ME3A LINE L1 5306 5600 -562 2013 131 3 29 chr1 169610494 169610638 -73053715 + AluSx SINE Alu 1 147 -165 2168 104 7 0 chr1 169610638 169610926 -73053427 + AluSg SINE Alu 1 290 -20 2013 131 3 29 chr1 169610926 169611094 -73053259 + AluSx SINE Alu 147 305 -7 783 296 57 29 chr1 169611094 169611157 -73053196 + L1ME3A LINE L1 5600 5660 -502 6168 148 30 27 chr1 169611159 169611173 -73053180 - L1P LINE L1 -5048 1098 1086 5207 55 0 6 chr1 169611173 169611828 -73052525 - L1PA6 LINE L1 -11 6143 5493 6168 148 30 27 chr1 169611828 169612898 -73051455 - L1P LINE L1 -5060 1086 11 578 259 43 11 chr1 169612910 169613095 -73051258 + L1ME3A LINE L1 5654 5844 -326 3367 75 23 0 chr1 169613186 169613629 -73050724 + MLT2A2 LTR ERVL 1 453 0 14885 87 27 2 chr1 169613630 169615652 -73048701 + HERVL-A2 LTR ERVL 2 2074 -3580 * 15704 75 6 2 chr1 169615648 169617807 -73046546 + HERVL LTR ERVL 3438 5654 0 2042 131 0 0 chr1 169618484 169618767 -73045586 - AluSx SINE Alu -29 283 1 476 95 0 0 chr1 169618907 169618981 -73045372 + AluSp/q SINE Alu 225 298 -15 824 152 0 0 chr1 169618985 169619110 -73045243 - AluJb SINE Alu -187 125 1 183 361 71 50 chr1 169619599 169619937 -73044416 + L2 LINE L2 2596 2940 -374 276 314 88 36 chr1 169620162 169620299 -73044054 + L2 LINE L2 3127 3270 -2 22 88 0 0 chr1 169620656 169620713 -73043640 + AT_rich Low_complexity Low_complexity 1 57 0 886 203 55 0 chr1 169621251 169621414 -73042939 + FRAM SINE Alu 1 172 -4 1464 157 33 93 chr1 169622796 169623096 -73041257 + AluJo SINE Alu 1 282 -30 183 100 0 0 chr1 169623099 169623129 -73041224 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2445 81 3 0 chr1 169623513 169623821 -73040532 - AluSp SINE Alu -4 309 1 1804 186 0 19 chr1 169624311 169624629 -73039724 - AluJb SINE Alu 0 312 1 1178 217 84 62 chr1 169624714 169625119 -73039234 + MLT1C LTR MaLR 54 467 0 1501 106 55 0 chr1 169625243 169625478 -73038875 - L1MA3 LINE L1 0 6305 6058 427 272 247 6 chr1 169625618 169625776 -73038577 - MIR SINE MIR -39 223 28 724 245 40 84 chr1 169625982 169626304 -73038049 - L2 LINE L2 -1 3312 3005 622 247 62 70 chr1 169626358 169626617 -73037736 + HAL1 LINE L1 1323 1579 -928 234 262 0 48 chr1 169626622 169626706 -73037647 + HAL1 LINE L1 1556 1635 -872 761 155 92 14 chr1 169626711 169626853 -73037500 + FRAM SINE Alu 22 174 -2 465 255 0 0 chr1 169626857 169626955 -73037398 + HAL1 LINE L1 1797 1894 -613 620 209 199 55 chr1 169627901 169628102 -73036251 - MIR SINE MIR -32 230 1 837 200 55 6 chr1 169628151 169628316 -73036037 - AluJb SINE Alu -6 306 134 2313 96 0 7 chr1 169628560 169628863 -73035490 - AluSg SINE Alu -9 301 1 2012 82 4 19 chr1 169629195 169629465 -73034888 + AluSq SINE Alu 1 266 -47 2334 52 41 10 chr1 169629587 169629878 -73034475 - AluY SINE Alu -11 300 1 2502 35 3 0 chr1 169630014 169630303 -73034050 - AluY SINE Alu -21 290 1 911 83 53 0 chr1 169630430 169630562 -73033791 - MER85 DNA T2_type 0 139 1 2297 94 0 13 chr1 169631311 169631619 -73032734 - AluSq SINE Alu -9 304 1 1617 124 4 23 chr1 169631691 169631948 -73032405 + AluSc SINE Alu 41 292 -17 26 50 0 0 chr1 169631950 169631990 -73032363 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 169632337 169632365 -73031988 + AT_rich Low_complexity Low_complexity 1 28 0 327 178 156 11 chr1 169632842 169632932 -73031421 - L1ME4a LINE L1 -12 6109 6007 621 244 75 6 chr1 169632946 169633106 -73031247 + MIR SINE MIR 3 173 -89 252 236 0 0 chr1 169633559 169633648 -73030705 + (TA)n Simple_repeat Simple_repeat 1 89 0 2416 81 0 0 chr1 169634714 169635009 -73029344 - AluSq SINE Alu -18 295 1 2226 112 0 7 chr1 169635091 169635407 -73028946 - AluSx SINE Alu 0 312 1 487 244 41 24 chr1 169635670 169635793 -73028560 - L2 LINE L2 0 3313 3189 305 277 75 0 chr1 169635907 169636001 -73028352 + L2 LINE L2 3172 3272 0 315 177 0 16 chr1 169636776 169636838 -73027515 - MER116 DNA Mariner 0 80 20 317 246 0 0 chr1 169636879 169636940 -73027413 + MIR3 SINE MIR 148 208 0 202 151 75 0 chr1 169637132 169637185 -73027168 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 28 29 0 0 chr1 169637858 169637893 -73026460 + AT_rich Low_complexity Low_complexity 1 35 0 483 276 106 29 chr1 169639169 169639339 -73025014 - MIR3 SINE MIR -3 205 23 21 36 0 0 chr1 169639740 169639768 -73024585 + AT_rich Low_complexity Low_complexity 1 28 0 430 228 0 0 chr1 169640836 169640950 -73023403 - L1MA4 LINE L1 -6 6294 6181 25 31 0 0 chr1 169641131 169641163 -73023190 + AT_rich Low_complexity Low_complexity 1 32 0 1659 177 50 10 chr1 169643111 169643410 -73020943 + AluJo SINE Alu 1 311 -1 24 0 0 0 chr1 169644402 169644426 -73019927 + AT_rich Low_complexity Low_complexity 1 24 0 2964 241 42 31 chr1 169644476 169645260 -73019093 + L1ME3A LINE L1 5330 6125 -45 1788 171 0 35 chr1 169645260 169645576 -73018777 - AluJo SINE Alu -7 305 1 2964 241 42 31 chr1 169645576 169645621 -73018732 + L1ME3A LINE L1 6125 6168 -2 2481 65 7 0 chr1 169645767 169646076 -73018277 - AluY SINE Alu 0 311 1 2090 100 3 20 chr1 169646116 169646417 -73017936 + AluSc SINE Alu 1 296 -13 27 49 0 0 chr1 169646615 169646656 -73017697 + AT_rich Low_complexity Low_complexity 1 41 0 1270 232 33 104 chr1 169647112 169647204 -73017149 - MLT1E3 LTR MaLR -2 622 525 1718 162 35 7 chr1 169647204 169647367 -73016986 - AluJb SINE Alu -20 292 116 216 0 0 0 chr1 169647367 169647391 -73016962 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1718 162 35 7 chr1 169647391 169647511 -73016842 - AluJb SINE Alu -196 116 1 1270 232 33 104 chr1 169647511 169647811 -73016542 - MLT1E3 LTR MaLR -99 525 258 2376 142 56 7 chr1 169647819 169648227 -73016126 - MSTA LTR MaLR 0 428 1 9393 173 19 15 chr1 169648227 169648449 -73015904 - MSTA-int LTR MaLR 0 1651 1432 2254 75 7 0 chr1 169648449 169648727 -73015626 + AluY SINE Alu 23 302 -9 9393 173 19 15 chr1 169648727 169648832 -73015521 - MSTA-int LTR MaLR -219 1432 1329 3806 98 0 0 chr1 169648832 169649344 -73015009 - MER75 DNA T2_type 0 514 3 9393 173 19 15 chr1 169649344 169650657 -73013696 - MSTA-int LTR MaLR -322 1329 2 425 133 56 33 chr1 169650712 169650802 -73013551 - MLT1E3 LTR MaLR -503 151 60 929 161 6 19 chr1 169650803 169650964 -73013389 + AluJb SINE Alu 140 298 -14 1203 267 110 40 chr1 169651018 169651900 -73012453 + L1ME3A LINE L1 3645 4605 -1541 1270 144 10 5 chr1 169651906 169652100 -73012253 + AluJo SINE Alu 87 281 -31 1237 271 128 24 chr1 169652149 169652866 -73011487 + L1ME3A LINE L1 4672 5556 -614 2280 80 3 13 chr1 169652866 169653167 -73011186 + AluSg1 SINE Alu 1 298 -11 1237 271 128 24 chr1 169653167 169653605 -73010748 + L1ME3A LINE L1 5556 5947 -223 368 262 146 34 chr1 169653895 169654128 -73010225 - L1ME LINE L1 -299 5822 5564 366 259 107 90 chr1 169654292 169654702 -73009651 - L1ME LINE L1 -1197 4949 4533 2069 151 0 0 chr1 169654931 169655243 -73009110 + AluSx SINE Alu 1 312 0 596 254 129 73 chr1 169655300 169656063 -73008290 + L1ME3A LINE L1 5149 5937 -233 249 250 0 0 chr1 169656244 169656320 -73008033 - L1ME LINE L1 -2212 3934 3859 22 0 0 0 chr1 169656553 169656575 -73007778 + AT_rich Low_complexity Low_complexity 1 22 0 375 207 35 11 chr1 169656872 169656959 -73007394 + MER69 DNA AcHobo 2438 2526 0 1187 151 58 5 chr1 169657614 169657819 -73006534 - MLT1C LTR MaLR -1 466 251 2058 144 26 35 chr1 169658477 169658610 -73005743 - MER2 DNA MER2_type 0 345 212 3098 114 89 20 chr1 169658610 169659102 -73005251 - MER1A DNA MER1_type -1 526 1 2058 144 26 35 chr1 169659102 169659316 -73005037 - MER2 DNA MER2_type -133 212 1 480 167 73 0 chr1 169659316 169659412 -73004941 - L1MA9 LINE L1 -40 6272 6170 300 111 0 0 chr1 169659414 169659459 -73004894 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 4207 150 53 48 chr1 169659475 169660466 -73003887 - L1MA9 LINE L1 -159 6153 5164 235 213 85 0 chr1 169660636 169660683 -73003670 - L2 LINE L2 -1 3312 3262 2572 53 0 0 chr1 169660791 169661094 -73003259 + AluY SINE Alu 1 303 -8 538 289 62 43 chr1 169661277 169661533 -73002820 + MIR SINE MIR 2 262 0 504 0 0 0 chr1 169662406 169662462 -73001891 + (TTATG)n Simple_repeat Simple_repeat 2 57 0 1987 113 7 4 chr1 169662465 169662739 -73001614 - AluSx SINE Alu -32 280 6 834 217 16 29 chr1 169663037 169663281 -73001072 + L1MC4 LINE L1 7759 7999 -43 2177 145 169 4 chr1 169663614 169664066 -73000287 + L1MB7 LINE L1 5655 6184 0 1075 288 178 2 chr1 169664100 169664575 -72999778 + L2 LINE L2 2751 3313 0 1073 163 16 26 chr1 169664920 169665110 -72999243 + MER58A DNA MER1_type 37 224 0 463 256 77 26 chr1 169665193 169665349 -72999004 + MIR SINE MIR 76 239 -23 1743 168 55 0 chr1 169665597 169665888 -72998465 - AluJo SINE Alu 0 312 6 263 164 16 16 chr1 169666130 169666191 -72998162 - Alu SINE Alu -1 301 241 2028 87 8 8 chr1 169666225 169666491 -72997862 - AluSx SINE Alu -44 268 3 267 256 51 13 chr1 169666904 169666982 -72997371 - L2 LINE L2 -193 3079 2999 267 219 137 14 chr1 169667035 169667108 -72997245 - L2 LINE L2 -6 3307 3226 446 294 21 7 chr1 169667669 169667812 -72996541 - L2 LINE L2 -9 3304 3160 441 36 0 0 chr1 169668293 169668348 -72996005 + (CA)n Simple_repeat Simple_repeat 1 55 0 369 277 86 45 chr1 169672244 169672464 -72991889 - L2 LINE L2 -480 2834 2606 378 336 155 30 chr1 169672645 169673321 -72991032 - L2 LINE L2 -773 2541 1781 217 244 0 0 chr1 169673745 169673790 -72990563 + L2 LINE L2 3269 3313 0 704 294 94 55 chr1 169674250 169674709 -72989644 + L1MEd LINE L1 97 573 -5632 26 50 0 0 chr1 169674892 169674932 -72989421 + AT_rich Low_complexity Low_complexity 1 40 0 358 221 158 31 chr1 169674985 169675112 -72989241 + L1MEd LINE L1 2168 2310 -4086 1093 278 171 17 chr1 169675181 169676004 -72988349 + L1MEd LINE L1 2384 3333 -2882 718 204 56 0 chr1 169676205 169676347 -72988006 + FRAM SINE Alu 1 150 -16 226 135 58 0 chr1 169676362 169676414 -72987939 + GA-rich Low_complexity Low_complexity 5 59 0 1216 119 97 37 chr1 169676890 169677159 -72987194 - AluJb SINE Alu -27 285 1 314 210 12 25 chr1 169677432 169677513 -72986840 + MER116 DNA Mariner 1 80 0 277 344 32 19 chr1 169678188 169678342 -72986011 - L2 LINE L2 -606 2708 2553 332 217 212 49 chr1 169679478 169679662 -72984691 + MIR SINE MIR 1 214 -48 395 100 57 14 chr1 169679683 169679753 -72984600 + MADE1 DNA Mariner 3 75 -5 33 0 0 0 chr1 169680060 169680093 -72984260 + AT_rich Low_complexity Low_complexity 1 33 0 194 308 13 26 chr1 169681394 169681472 -72982881 + MIR SINE MIR 142 218 -44 962 167 25 0 chr1 169681491 169681653 -72982700 + AluJb SINE Alu 130 295 -17 23 33 0 0 chr1 169681767 169681797 -72982556 + AT_rich Low_complexity Low_complexity 1 30 0 1539 158 106 0 chr1 169682159 169682424 -72981929 + AluJb SINE Alu 13 305 -7 405 274 173 4 chr1 169682666 169682896 -72981457 + L2 LINE L2 2781 3039 -274 186 362 29 38 chr1 169683333 169683438 -72980915 - MIR SINE MIR -63 145 42 3291 47 0 0 chr1 169684353 169684758 -72979595 - L1PA4 LINE L1 -3 6152 5748 192 152 0 0 chr1 169686323 169686356 -72977997 + (TA)n Simple_repeat Simple_repeat 1 33 0 2116 123 3 0 chr1 169687363 169687655 -72976698 - AluSx SINE Alu -19 293 1 398 216 2 14 chr1 169688092 169688176 -72976177 + AluJ/FLAM SINE Alu 1 71 -231 3794 93 9 15 chr1 169690084 169690613 -72973740 - MER1A DNA MER1_type -1 526 1 361 309 151 29 chr1 169690681 169690820 -72973533 + L2 LINE L2 3116 3271 -1 507 277 34 40 chr1 169692090 169692267 -72972086 - MER5B DNA MER1_type -1 177 2 243 175 0 0 chr1 169692750 169692807 -72971546 + (TA)n Simple_repeat Simple_repeat 2 58 0 23 0 0 0 chr1 169693528 169693551 -72970802 + AT_rich Low_complexity Low_complexity 1 23 0 4543 141 60 21 chr1 169693813 169694580 -72969773 + L1MB7 LINE L1 5317 6120 -64 1524 197 13 32 chr1 169694580 169694895 -72969458 - AluJo SINE Alu -2 310 2 4543 141 60 21 chr1 169694895 169694963 -72969390 + L1MB7 LINE L1 6120 6184 0 30 93 0 0 chr1 169694991 169695077 -72969276 + AT_rich Low_complexity Low_complexity 1 86 0 264 314 100 69 chr1 169695617 169695896 -72968457 + L2 LINE L2 2315 2613 -701 2053 265 130 61 chr1 169695896 169696787 -72967566 + MER45C DNA AcHobo 1 953 0 264 314 100 69 chr1 169696787 169696927 -72967426 + L2 LINE L2 2613 2747 -567 318 282 13 13 chr1 169697506 169697584 -72966769 + Charlie7 DNA MER1_type 3 80 -2532 189 0 0 0 chr1 169697728 169697749 -72966604 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 2026 128 14 0 chr1 169697749 169698031 -72966322 - AluSx SINE Alu -26 286 1 882 184 12 6 chr1 169698474 169698637 -72965716 + FAM SINE Alu 1 164 -11 2082 96 46 4 chr1 169699114 169699395 -72964958 + AluSx SINE Alu 1 293 -19 187 267 0 22 chr1 169700317 169700362 -72963991 - L2 LINE L2 -7 3306 3263 301 264 63 81 chr1 169700573 169700907 -72963446 + L1P LINE L1 4906 5233 -913 2252 97 0 3 chr1 169700925 169701225 -72963128 + AluSg SINE Alu 1 299 -11 2525 92 6 11 chr1 169701382 169701742 -72962611 + L1PB1 LINE L1 5792 6149 -2 465 363 78 32 chr1 169702262 169702695 -72961658 - L2 LINE L2 -2524 790 338 1250 191 21 4 chr1 169702912 169703147 -72961206 + L1MCa LINE L1 259 497 -5929 456 63 63 0 chr1 169703150 169703229 -72961124 + CT-rich Low_complexity Low_complexity 1 84 0 321 109 0 0 chr1 169703260 169703306 -72961047 - Alu SINE Alu -24 276 231 1132 85 0 0 chr1 169703306 169703447 -72960906 - AluSq/x SINE Alu -171 141 1 3570 136 53 80 chr1 169703447 169704195 -72960158 + L1MCa LINE L1 483 1210 -5216 432 161 49 0 chr1 169704190 169704271 -72960082 + L1MC1 LINE L1 5839 5923 -421 * 497 184 18 37 chr1 169704271 169704380 -72959973 - Tigger5 DNA MER2_type 0 2323 2217 2066 166 17 25 chr1 169704420 169704824 -72959529 + L1MC1 LINE L1 5924 6324 -9 5613 178 85 25 chr1 169704833 169707478 -72956875 - L1MCa LINE L1 -2535 3891 1090 187 299 97 45 chr1 169707492 169707626 -72956727 + L2 LINE L2 3173 3313 0 2277 90 10 0 chr1 169707667 169707968 -72956385 + AluSp SINE Alu 1 304 -9 1960 142 16 9 chr1 169708290 169708607 -72955746 - Tigger2 DNA MER2_type 0 2718 2400 970 251 148 46 chr1 169708875 169709246 -72955107 + MLT1I LTR MaLR 1 409 0 1571 202 30 3 chr1 169709451 169709631 -72954722 - AluJo SINE Alu -2 310 117 216 0 0 0 chr1 169709631 169709655 -72954698 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1571 202 30 3 chr1 169709655 169709776 -72954577 - AluJo SINE Alu -195 117 1 249 276 66 0 chr1 169709873 169709949 -72954404 - L2 LINE L2 0 3313 3233 294 234 0 0 chr1 169710232 169710296 -72954057 + L2 LINE L2 2897 2960 -312 22 35 0 0 chr1 169710442 169710471 -72953882 + AT_rich Low_complexity Low_complexity 1 29 0 1137 230 0 9 chr1 169711155 169711372 -72952981 - MIR SINE MIR -40 222 8 968 192 134 5 chr1 169711617 169711841 -72952512 - MIR SINE MIR -7 255 3 316 252 153 54 chr1 169713097 169713599 -72950754 - L1ME2 LINE L1 -65 6056 5502 1006 276 9 4 chr1 169713644 169713869 -72950484 - MIR SINE MIR -21 241 16 280 242 126 27 chr1 169713882 169714170 -72950183 - L1M2 LINE L1 -786 5360 5152 1114 155 0 0 chr1 169714420 169714594 -72949759 - AluSg/x SINE Alu -2 308 135 1849 178 3 0 chr1 169714650 169714948 -72949405 - AluJb SINE Alu -13 299 1 231 327 82 45 chr1 169715120 169715230 -72949123 - L2 LINE L2 -17 3255 3142 472 317 175 28 chr1 169715701 169716136 -72948217 - MLT1J LTR MaLR -8 503 5 1146 159 32 56 chr1 169716311 169716562 -72947791 + L1MB8 LINE L1 5622 5866 -312 625 147 10 0 chr1 169716562 169716664 -72947689 + AluJb SINE Alu 182 284 -28 348 120 0 80 chr1 169716685 169716760 -72947593 + L1MB8 LINE L1 5884 5952 -226 * 760 266 17 21 chr1 169716736 169716969 -72947384 + HAL1 LINE L1 1367 1598 -909 255 368 82 34 chr1 169716988 169717257 -72947096 - L2 LINE L2 -523 2791 2510 3431 199 39 40 chr1 169717774 169718593 -72945760 - L1MD2 LINE L1 -13 6346 5529 417 209 5 3 chr1 169718606 169718731 -72945622 - L1M4 LINE L1 -1073 5073 4948 24 67 0 0 chr1 169718750 169718795 -72945558 + AT_rich Low_complexity Low_complexity 1 45 0 880 178 0 33 chr1 169718795 169718947 -72945406 - AluJ SINE Alu -30 282 136 234 267 17 0 chr1 169720264 169720324 -72944029 + L2 LINE L2 3242 3302 -11 362 269 34 101 chr1 169720811 169721019 -72943334 - MIR SINE MIR -61 201 8 342 0 0 0 chr1 169721095 169721133 -72943220 + (CA)n Simple_repeat Simple_repeat 2 39 0 858 298 81 30 chr1 169721448 169721981 -72942372 + L1MC4a LINE L1 5314 5873 -1935 182 200 37 15 chr1 169722015 169722150 -72942203 + (TA)n Simple_repeat Simple_repeat 2 139 0 348 300 208 74 chr1 169722333 169723729 -72940624 + L2 LINE L2 1693 3272 0 2156 114 0 13 chr1 169723819 169724117 -72940236 + AluSq SINE Alu 2 295 -18 195 42 0 0 chr1 169724282 169724306 -72940047 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 819 164 0 0 chr1 169726933 169727055 -72937298 - AluJ SINE Alu -180 132 11 35 41 0 0 chr1 169728059 169728108 -72936245 + AT_rich Low_complexity Low_complexity 1 49 0 378 0 0 0 chr1 169728290 169728332 -72936021 + (TG)n Simple_repeat Simple_repeat 1 42 0 459 0 0 0 chr1 169729069 169729120 -72935233 + (TG)n Simple_repeat Simple_repeat 2 52 0 396 0 0 0 chr1 169730154 169730198 -72934155 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 208 313 88 12 chr1 169730223 169730303 -72934050 + L2 LINE L2 3186 3271 -1 643 156 225 0 chr1 169730563 169730723 -72933630 - MER33 DNA MER1_type -127 197 2 2321 140 51 51 chr1 169731969 169732397 -72931956 - MSTA LTR MaLR 0 428 1 209 303 37 43 chr1 169732429 169732544 -72931809 - MIR SINE MIR -88 120 39 417 244 6 83 chr1 169734393 169734561 -72929792 - L1ME1 LINE L1 0 6162 6008 240 86 0 0 chr1 169734863 169734898 -72929455 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 371 308 38 110 chr1 169734988 169735333 -72929020 - L2 LINE L2 -18 3295 2935 278 385 0 8 chr1 169735423 169735540 -72928813 - L2 LINE L2 -475 2839 2724 21 0 0 0 chr1 169736564 169736585 -72927768 + AT_rich Low_complexity Low_complexity 1 21 0 791 208 95 12 chr1 169736587 169736828 -72927525 - MER33 DNA MER1_type -38 286 26 1080 180 0 0 chr1 169737361 169737533 -72926820 + FRAM SINE Alu 1 170 -6 213 351 158 30 chr1 169737558 169737579 -72926774 - L2 LINE L2 -678 2636 2619 2238 110 10 7 chr1 169737579 169737889 -72926464 + AluSq SINE Alu 1 311 -2 213 351 158 30 chr1 169737889 169738576 -72925777 - L2 LINE L2 -695 2619 1837 580 332 36 11 chr1 169740385 169740619 -72923734 - MIR SINE MIR -16 246 6 211 316 59 29 chr1 169740927 169741063 -72923290 - L2 LINE L2 -13 3300 3161 483 197 59 20 chr1 169742939 169743091 -72921262 + L1ME4a LINE L1 5693 5850 -271 788 246 102 32 chr1 169743260 169743732 -72920621 + L1MC4 LINE L1 7537 8041 -1 232 312 45 19 chr1 169743737 169743891 -72920462 + L1ME4a LINE L1 5964 6121 0 22 35 0 0 chr1 169744058 169744087 -72920266 + AT_rich Low_complexity Low_complexity 1 29 0 190 367 41 48 chr1 169744144 169744291 -72920062 - L2 LINE L2 -231 3041 2896 21 36 0 0 chr1 169745025 169745053 -72919300 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 169750556 169750580 -72913773 + AT_rich Low_complexity Low_complexity 1 24 0 2366 107 0 0 chr1 169750993 169751301 -72913052 - AluSx SINE Alu -4 308 1 186 229 0 0 chr1 169752875 169752910 -72911443 - L2 LINE L2 -24 3289 3255 371 92 200 0 chr1 169753884 169753949 -72910404 - MADE1 DNA Mariner -1 79 2 297 0 0 0 chr1 169754755 169754788 -72909565 + (TG)n Simple_repeat Simple_repeat 1 33 0 225 0 0 0 chr1 169755019 169755044 -72909309 + (T)n Simple_repeat Simple_repeat 1 25 0 279 173 0 0 chr1 169755990 169756042 -72908311 + A-rich Low_complexity Low_complexity 1 52 0 639 243 126 14 chr1 169756734 169756956 -72907397 - MIR SINE MIR -7 255 9 433 354 96 19 chr1 169756957 169757375 -72906978 - L2 LINE L2 -1333 1981 1532 1890 162 3 0 chr1 169759203 169759493 -72904860 + AluJb SINE Alu 1 291 -21 22 56 0 0 chr1 169761292 169761328 -72903025 + AT_rich Low_complexity Low_complexity 1 36 0 34 0 0 0 chr1 169761576 169761610 -72902743 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr1 169762356 169762384 -72901969 + AT_rich Low_complexity Low_complexity 1 28 0 209 163 20 0 chr1 169764867 169764916 -72899437 + (TA)n Simple_repeat Simple_repeat 1 50 0 185 200 75 0 chr1 169766619 169766659 -72897694 - MIR SINE MIR -4 258 216 * 188 220 0 102 chr1 169766630 169766689 -72897664 - L2 LINE L2 -24 3289 3237 21 0 0 0 chr1 169768753 169768774 -72895579 + AT_rich Low_complexity Low_complexity 1 21 0 305 201 23 196 chr1 169770042 169770256 -72894097 + MER5B DNA MER1_type 1 177 -1 2412 67 0 7 chr1 169770697 169770994 -72893359 + AluY SINE Alu 10 304 -7 760 125 7 7 chr1 169771331 169771475 -72892878 - MER63 DNA MER1_type -868 193 50 296 240 27 13 chr1 169771589 169771664 -72892689 + MIR3 SINE MIR 124 199 -9 941 178 0 7 chr1 169771863 169772015 -72892338 + FRAM SINE Alu 1 151 -25 875 227 63 29 chr1 169772015 169772253 -72892100 - MIR SINE MIR -2 260 15 219 103 0 0 chr1 169772253 169772292 -72892061 + (A)n Simple_repeat Simple_repeat 1 39 0 204 255 128 78 chr1 169773080 169773221 -72891132 - MIR SINE MIR -66 196 49 525 254 21 27 chr1 169774196 169774440 -72889913 - L1MC4a LINE L1 -304 5817 5602 1845 166 23 7 chr1 169774594 169774901 -72889452 + AluJo SINE Alu 1 312 0 384 341 118 9 chr1 169775193 169775413 -72888940 - L1ME4a LINE L1 -36 6085 5842 345 314 48 43 chr1 169775510 169775698 -72888655 + L2 LINE L2 2810 2998 -274 371 232 77 25 chr1 169776151 169776308 -72888045 - MIR SINE MIR -2 260 15 388 311 91 101 chr1 169776655 169777466 -72886887 - L1M2 LINE L1 -5463 1386 584 961 162 51 56 chr1 169779052 169779268 -72885085 + L1MB7 LINE L1 5927 6141 -43 2069 121 14 0 chr1 169779268 169779549 -72884804 + AluSx SINE Alu 1 285 -27 180 0 0 0 chr1 169779549 169779569 -72884784 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 201 300 17 0 chr1 169779633 169779693 -72884660 + GA-rich Low_complexity Low_complexity 4 64 0 273 281 14 86 chr1 169779784 169779923 -72884430 - MIR SINE MIR -24 238 110 342 251 10 131 chr1 169780027 169780226 -72884127 - L3b LINE CR1 -103 1480 1306 380 258 159 25 chr1 169780867 169781030 -72883323 + MIR SINE MIR 78 262 0 374 307 64 23 chr1 169781648 169781866 -72882487 - MIR SINE MIR -14 248 22 1861 109 43 26 chr1 169782190 169782494 -72881859 + AluJb SINE Alu 1 309 -3 346 294 46 28 chr1 169782881 169782990 -72881363 - L2 LINE L2 0 3272 3162 247 255 207 21 chr1 169783094 169783282 -72881071 - L2 LINE L2 -456 2858 2636 1574 146 10 93 chr1 169784299 169784600 -72879753 + AluJo SINE Alu 1 276 -36 322 301 82 50 chr1 169785337 169785556 -72878797 - MIR SINE MIR -11 251 26 396 223 107 16 chr1 169785587 169785708 -72878645 + MER5B DNA MER1_type 5 136 -42 249 362 78 9 chr1 169785722 169785838 -72878515 + L2 LINE L2 3126 3249 -23 385 110 27 14 chr1 169785846 169785919 -72878434 + GA-rich Low_complexity Low_complexity 3 76 0 189 315 54 22 chr1 169787281 169787373 -72876980 - L2 LINE L2 -5 3267 3173 880 139 38 5 chr1 169787373 169787593 -72876760 + MER39B LTR ERV1 1 269 -384 2357 103 0 0 chr1 169787916 169788228 -72876125 - AluSq SINE Alu 0 313 2 700 63 42 0 chr1 169788433 169788528 -72875825 + L1PA6 LINE L1 6056 6154 0 1728 124 93 0 chr1 169788650 169788935 -72875418 - AluSx SINE Alu 0 309 1 419 292 219 0 chr1 169789944 169790136 -72874217 - MIR SINE MIR 0 262 29 * 489 296 194 5 chr1 169790129 169790345 -72874008 - MIR SINE MIR 0 262 6 22 0 0 0 chr1 169793097 169793119 -72871234 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 169793231 169793255 -72871098 + AT_rich Low_complexity Low_complexity 1 24 0 2214 104 3 0 chr1 169793459 169793747 -72870606 + AluSp SINE Alu 1 289 -24 3124 199 71 43 chr1 169793870 169794133 -72870220 + L1MB7 LINE L1 5346 5600 -584 1658 191 0 10 chr1 169794133 169794437 -72869916 + AluJo SINE Alu 1 301 -11 2189 107 0 7 chr1 169794444 169794743 -72869610 + AluSq SINE Alu 1 297 -16 3124 199 71 43 chr1 169794743 169795285 -72869068 + L1MB7 LINE L1 5605 6182 -2 1608 225 102 38 chr1 169795289 169795875 -72868478 + L1MC5 LINE L1 7292 7915 -46 1218 85 0 0 chr1 169795891 169796068 -72868285 - AluSc SINE Alu 0 306 130 1110 251 72 17 chr1 169796069 169796532 -72867821 - MER21B LTR ERV1 -234 629 98 235 264 46 23 chr1 169796568 169796655 -72867698 - MER21B LTR ERV1 -765 98 10 1057 226 14 48 chr1 169796666 169796958 -72867395 - MLT1F LTR MaLR -260 282 1 2868 191 54 33 chr1 169796963 169797152 -72867201 + MER82 DNA MER2_type 1 185 -468 2061 119 3 14 chr1 169797152 169797460 -72866893 - AluSx SINE Alu 0 305 1 2868 191 54 33 chr1 169797460 169797902 -72866451 + MER82 DNA MER2_type 185 646 -7 1945 126 31 7 chr1 169798094 169798380 -72865973 + AluSx SINE Alu 1 293 -19 229 304 0 0 chr1 169799552 169799608 -72864745 + GA-rich Low_complexity Low_complexity 4 59 0 1647 189 18 0 chr1 169799838 169800148 -72864205 + AluJb SINE Alu 1 315 0 2219 105 0 16 chr1 169800481 169800794 -72863559 - AluSx SINE Alu -4 308 1 1974 129 34 3 chr1 169801080 169801375 -72862978 - AluSx SINE Alu -8 304 1 554 284 95 58 chr1 169802540 169802899 -72861454 + MLT1J LTR MaLR 1 372 -139 299 162 81 14 chr1 169802930 169803004 -72861349 + MLT1J LTR MaLR 433 511 0 205 325 123 0 chr1 169804028 169804142 -72860211 - L2 LINE L2 -14 3299 3172 21 0 0 0 chr1 169804142 169804163 -72860190 + AT_rich Low_complexity Low_complexity 1 21 0 370 239 184 59 chr1 169804288 169804543 -72859810 - L2 LINE L2 -1244 2070 1784 296 278 31 0 chr1 169804998 169805095 -72859258 - L1MC4a LINE L1 -1882 5926 5827 568 246 58 0 chr1 169805199 169805337 -72859016 + MER106A DNA MER1_type 1 146 -90 204 145 97 0 chr1 169805382 169805444 -72858909 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 369 175 0 0 chr1 169805467 169805524 -72858829 + MSTB LTR MaLR 1 57 -369 10029 56 1 0 chr1 169805524 169806720 -72857633 + HERV17 LTR ERV1 5951 7147 -1479 313 51 0 0 chr1 169806716 169806755 -72857598 + HERV17 LTR ERV1 7510 7548 -1078 * 2452 48 0 0 chr1 169806745 169807037 -72857316 + HERV17 LTR ERV1 8335 8626 0 2230 103 9 18 chr1 169807037 169807366 -72856987 + LTR17 LTR ERV1 1 326 -454 273 57 0 0 chr1 169807366 169807401 -72856952 + (A)n Simple_repeat Simple_repeat 1 35 0 2131 132 76 11 chr1 169807401 169807763 -72856590 + MSTB LTR MaLR 41 355 0 2908 164 87 9 chr1 169807826 169808401 -72855952 + L1MC2 LINE L1 5712 6331 -13 231 158 70 18 chr1 169808403 169808460 -72855893 + MER106B DNA MER1_type 1000 1059 0 240 35 0 0 chr1 169808926 169808955 -72855398 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 23 33 0 0 chr1 169809633 169809663 -72854690 + AT_rich Low_complexity Low_complexity 1 30 0 430 271 39 0 chr1 169809692 169809821 -72854532 - MIR SINE MIR 0 262 129 345 250 57 40 chr1 169809867 169809991 -72854362 - HsTC2 DNA Tc2 -1772 126 1 248 262 66 0 chr1 169810001 169810062 -72854291 - MIR SINE MIR -119 143 79 200 317 109 29 chr1 169811511 169811717 -72852636 + L2 LINE L2 2737 2962 -310 2224 122 0 3 chr1 169811798 169812110 -72852243 - AluSx SINE Alu -1 311 1 373 283 194 22 chr1 169812153 169812333 -72852020 - MIR SINE MIR -50 212 2 2294 117 19 48 chr1 169812562 169812937 -72851416 + THE1B LTR MaLR 1 364 0 207 0 0 0 chr1 169813067 169813090 -72851263 + (T)n Simple_repeat Simple_repeat 1 23 0 5781 129 66 6 chr1 169813195 169814104 -72850249 - HSMAR2 DNA Mariner 0 1302 339 1009 145 0 0 chr1 169814104 169814249 -72850104 - AluJb SINE Alu -8 304 160 1503 196 90 19 chr1 169814258 169814569 -72849784 + MLT1F1 LTR MaLR 227 559 -8 22 0 0 0 chr1 169815076 169815098 -72849255 + AT_rich Low_complexity Low_complexity 1 22 0 2325 104 13 0 chr1 169815519 169815817 -72848536 + AluSx SINE Alu 1 302 -10 229 109 87 0 chr1 169815976 169816022 -72848331 - MADE1 DNA Mariner -30 50 1 1447 170 101 56 chr1 169816227 169816515 -72847838 + AluJo SINE Alu 1 301 -1 186 155 0 52 chr1 169816518 169816576 -72847777 + GA-rich Low_complexity Low_complexity 1 55 0 252 396 0 10 chr1 169816745 169816846 -72847507 + MIR SINE MIR 3 102 -160 1676 149 3 51 chr1 169817063 169817358 -72846995 + AluJo SINE Alu 1 281 -31 2446 52 0 0 chr1 169817500 169817791 -72846562 - AluY SINE Alu -1 310 20 3868 203 43 49 chr1 169818687 169819641 -72844712 + L1MB8 LINE L1 4835 5782 -396 213 39 0 0 chr1 169819641 169819667 -72844686 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 3868 203 43 49 chr1 169819667 169820062 -72844291 + L1MB8 LINE L1 5782 6178 0 474 276 64 13 chr1 169820152 169820308 -72844045 - MIR SINE MIR -67 195 32 204 256 0 0 chr1 169820502 169820545 -72843808 + MIR3 SINE MIR 138 180 -28 651 293 99 5 chr1 169822372 169822594 -72841759 + MIR SINE MIR 19 261 -1 998 157 0 0 chr1 169823048 169823207 -72841146 + MSTB1 LTR MaLR 274 432 0 1139 162 22 45 chr1 169824114 169824336 -72840017 - MER20 DNA MER1_type 0 219 3 1843 147 4 0 chr1 169824609 169824875 -72839478 + AluJb SINE Alu 1 267 -45 415 263 58 63 chr1 169825363 169825553 -72838800 - MER5A DNA MER1_type 0 189 1 2129 115 10 3 chr1 169826796 169827092 -72837261 + AluSx SINE Alu 1 298 -14 240 250 211 0 chr1 169827176 169827252 -72837101 + MIR SINE MIR 92 183 -79 15622 93 4 10 chr1 169827593 169829414 -72834939 + Charlie3 DNA MER1_type 46 1853 -853 2349 90 7 3 chr1 169829414 169829724 -72834629 + AluSq SINE Alu 1 311 -2 15622 93 4 10 chr1 169829724 169830106 -72834247 + Charlie3 DNA MER1_type 1853 2236 -470 1758 97 26 11 chr1 169830102 169830370 -72833983 + Charlie3 DNA MER1_type 2435 2706 -4 * 2056 129 10 3 chr1 169830404 169830698 -72833655 - AluSq SINE Alu -17 296 1 1953 186 5 19 chr1 169830716 169831086 -72833267 - MLT1A1 LTR MaLR 0 365 1 2028 88 33 4 chr1 169831680 169831979 -72832374 + AluY SINE Alu 1 307 0 217 338 0 0 chr1 169832450 169832518 -72831835 - L2 LINE L2 -213 3059 2992 626 307 177 36 chr1 169832584 169833182 -72831171 + L2 LINE L2 2404 3077 -195 3922 221 72 36 chr1 169833187 169833759 -72830594 + L1ME4a LINE L1 3215 3765 -2381 2403 63 0 3 chr1 169833759 169834058 -72830295 + AluY SINE Alu 1 298 -13 3922 221 72 36 chr1 169834058 169834494 -72829859 + L1ME4a LINE L1 3765 4184 -1962 201 39 0 0 chr1 169834494 169834520 -72829833 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3922 221 72 36 chr1 169834520 169834896 -72829457 + L1ME4a LINE L1 4184 4650 -1496 620 235 0 0 chr1 169834900 169835019 -72829334 + AluJo SINE Alu 3 121 -191 333 177 0 0 chr1 169835019 169835098 -72829255 + (CA)n Simple_repeat Simple_repeat 1 79 0 815 203 27 7 chr1 169835098 169835246 -72829107 + AluJo SINE Alu 125 275 -37 1614 219 120 39 chr1 169835246 169835655 -72828698 + L1ME4a LINE L1 4652 5026 -1140 2870 23 0 25 chr1 169835655 169836009 -72828344 - L1PA2 LINE L1 0 6155 5811 2400 93 0 0 chr1 169836010 169836310 -72828043 - AluSg SINE Alu -10 300 1 1614 219 120 39 chr1 169836310 169836551 -72827802 + L1ME4a LINE L1 5026 5246 -920 2204 129 3 0 chr1 169836551 169836860 -72827493 + AluSx SINE Alu 1 310 -2 1614 219 120 39 chr1 169836860 169837040 -72827313 + L1ME4a LINE L1 5246 5544 -622 381 185 62 14 chr1 169837066 169837170 -72827183 + L1ME1 LINE L1 5497 5602 -564 1095 141 6 0 chr1 169837171 169837327 -72827026 + AluJb SINE Alu 1 157 -155 973 182 65 4 chr1 169837327 169837558 -72826795 + L1ME1 LINE L1 5676 5920 -246 298 236 83 0 chr1 169837558 169837630 -72826723 - MER2 DNA MER2_type 0 345 268 1468 128 4 39 chr1 169837684 169837918 -72826435 + AluSx SINE Alu 1 226 -86 538 88 0 82 chr1 169837918 169838089 -72826264 + (TA)n Simple_repeat Simple_repeat 1 157 0 965 195 5 5 chr1 169838098 169838298 -72826055 - MER2 DNA MER2_type -139 206 7 441 288 47 19 chr1 169838307 169838519 -72825834 + L1ME1 LINE L1 5922 6139 -27 1707 194 13 3 chr1 169838542 169838841 -72825512 - AluJo SINE Alu -10 302 1 592 214 16 8 chr1 169839192 169839318 -72825035 + FLAM_A SINE Alu 14 140 -2 1096 262 12 0 chr1 169839931 169840179 -72824174 + MIR SINE MIR 11 261 -1 3934 142 60 20 chr1 169840305 169841123 -72823230 + L1MB4 LINE L1 5330 6180 0 1597 182 32 23 chr1 169842604 169842912 -72821441 + AluJb SINE Alu 1 311 -1 256 210 0 16 chr1 169844040 169844102 -72820251 + L1ME4a LINE L1 5635 5695 -426 519 316 54 6 chr1 169844195 169844512 -72819841 + L1MC4a LINE L1 4741 5072 -1074 1184 239 151 17 chr1 169844841 169845384 -72818969 + L1MC4a LINE L1 5262 5877 -1931 559 233 169 72 chr1 169845887 169846059 -72818294 + L1ME4a LINE L1 5813 6024 -97 702 136 0 199 chr1 169846059 169846265 -72818088 + FRAM SINE Alu 1 165 -1 559 233 169 72 chr1 169846265 169846371 -72817982 + L1ME4a LINE L1 6024 6118 -3 2180 100 6 32 chr1 169848035 169848346 -72816007 - AluSx SINE Alu -9 303 1 706 188 100 6 chr1 169848466 169848605 -72815748 + MER46C DNA MER2_type 1 160 -178 2212 91 10 7 chr1 169848605 169848901 -72815452 - AluSx SINE Alu -15 297 1 706 188 100 6 chr1 169848901 169848931 -72815422 + MER46C DNA MER2_type 160 186 -152 372 347 57 11 chr1 169851250 169851426 -72812927 - MIR3 SINE MIR -4 204 21 225 0 0 0 chr1 169852187 169852212 -72812141 + (CA)n Simple_repeat Simple_repeat 2 26 0 654 297 6 11 chr1 169852736 169852918 -72811435 - MIR3 SINE MIR -7 201 21 416 122 0 14 chr1 169854843 169854917 -72809436 + (CGG)n Simple_repeat Simple_repeat 1 73 0 261 232 49 24 chr1 169855994 169856076 -72808277 - MIR3 SINE MIR -6 202 119 231 36 0 0 chr1 169856239 169856267 -72808086 + (CTTG)n Simple_repeat Simple_repeat 3 30 0 6878 48 2 0 chr1 169856653 169857857 -72806496 - L1PA8 LINE L1 -3 6169 4988 1923 166 0 16 chr1 169858015 169858328 -72806025 + AluJo SINE Alu 1 308 -4 261 0 0 0 chr1 169859192 169859221 -72805132 + (CA)n Simple_repeat Simple_repeat 1 29 0 2031 136 3 0 chr1 169859252 169859547 -72804806 - AluJb SINE Alu -16 296 1 347 319 132 61 chr1 169860144 169860523 -72803830 + L2 LINE L2 2568 2973 -341 2290 62 0 43 chr1 169860680 169860984 -72803369 - AluY SINE Alu -20 291 1 344 285 77 39 chr1 169861198 169861328 -72803025 - MIR3 SINE MIR -54 154 20 2363 65 0 36 chr1 169862813 169863119 -72801234 - AluY SINE Alu -16 295 1 440 315 109 63 chr1 169863424 169863919 -72800434 - L2 LINE L2 -2411 903 386 2183 29 0 0 chr1 169863944 169864189 -72800164 + AluY SINE Alu 57 301 -10 2108 142 3 0 chr1 169864726 169865021 -72799332 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr1 169865024 169865047 -72799306 + AT_rich Low_complexity Low_complexity 1 23 0 331 333 113 27 chr1 169865055 169865131 -72799222 + L2 LINE L2 1063 1131 -2183 1817 163 46 30 chr1 169865131 169865500 -72798853 - THE1C LTR MaLR 0 375 1 331 333 113 27 chr1 169865500 169865759 -72798594 + L2 LINE L2 1131 1427 -1887 1884 129 16 55 chr1 169865957 169866267 -72798086 + AluSx SINE Alu 1 298 -14 306 266 19 32 chr1 169866292 169866446 -72797907 + L1MC4 LINE L1 7864 8015 -27 988 182 0 0 chr1 169866463 169866617 -72797736 + FRAM SINE Alu 1 152 -24 217 327 35 26 chr1 169866663 169866776 -72797577 + L2 LINE L2 1712 1825 -1489 411 21 0 0 chr1 169866836 169866884 -72797469 + (TA)n Simple_repeat Simple_repeat 2 49 0 676 262 51 66 chr1 169866920 169867420 -72796933 - L1ME3 LINE L1 -305 5857 5348 2031 158 6 6 chr1 169867420 169867731 -72796622 - AluJo SINE Alu -1 311 1 676 262 51 66 chr1 169867731 169867868 -72796485 - L1ME3 LINE L1 -814 5348 5211 1635 159 20 44 chr1 169867913 169868209 -72796144 + AluJb SINE Alu 1 289 -23 387 141 0 0 chr1 169868209 169868273 -72796080 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 813 286 131 41 chr1 169868335 169868996 -72795357 - L1ME3 LINE L1 -1062 5084 4484 2110 141 0 0 chr1 169868996 169869308 -72795045 - AluSx SINE Alu 0 312 1 813 286 131 41 chr1 169869308 169869382 -72794971 - L1ME3 LINE L1 -1662 4484 4418 2325 104 0 0 chr1 169869382 169869680 -72794673 + AluSc SINE Alu 1 298 -11 813 286 131 41 chr1 169869680 169869926 -72794427 - L1ME3 LINE L1 -1728 4418 4013 2273 111 0 0 chr1 169869988 169870286 -72794067 + AluSc SINE Alu 1 298 -11 522 331 118 55 chr1 169870552 169871422 -72792931 + L2 LINE L2 1839 2763 -551 903 151 0 76 chr1 169871737 169871909 -72792444 + FRAM SINE Alu 5 163 -3 281 267 190 17 chr1 169872031 169872147 -72792206 + L2 LINE L2 3137 3272 0 1513 204 26 23 chr1 169872431 169872783 -72791570 - MLT1A1 LTR MaLR 0 365 13 1824 182 0 13 chr1 169873744 169874052 -72790301 + AluJo SINE Alu 3 306 -6 473 314 60 5 chr1 169874337 169874522 -72789831 - L2 LINE L2 0 3313 3119 378 99 0 0 chr1 169874539 169874604 -72789749 + Alu SINE Alu 1 55 -253 1379 111 0 29 chr1 169874604 169874811 -72789542 + AluSg/x SINE Alu 112 312 0 1676 243 114 18 chr1 169874963 169875292 -72789061 - L2 LINE L2 -685 2629 2333 2213 130 19 30 chr1 169875292 169875660 -72788693 + THE1B LTR MaLR 1 364 0 1676 243 114 18 chr1 169875660 169875898 -72788455 - L2 LINE L2 -981 2333 2007 21 0 0 0 chr1 169877550 169877571 -72786782 + AT_rich Low_complexity Low_complexity 1 21 0 319 287 66 41 chr1 169877823 169877945 -72786408 - L2 LINE L2 -10 3262 3138 436 270 209 25 chr1 169878117 169878313 -72786040 - MIR SINE MIR -11 251 20 211 224 121 0 chr1 169878680 169878738 -72785615 - MIR SINE MIR 0 262 198 296 330 0 0 chr1 169878788 169878885 -72785468 + MIR SINE MIR 51 147 -115 1809 230 69 84 chr1 169879257 169879805 -72784548 + MLT1F LTR MaLR 1 540 -2 474 18 0 0 chr1 169879885 169879940 -72784413 + (CA)n Simple_repeat Simple_repeat 2 56 0 403 262 148 13 chr1 169880259 169880408 -72783945 - MIR SINE MIR -79 183 15 2207 104 13 0 chr1 169880478 169880785 -72783568 + AluY SINE Alu 1 311 0 686 327 116 14 chr1 169881280 169881980 -72782373 + L2 LINE L2 1527 2297 -1017 1728 153 91 16 chr1 169882027 169882335 -72782018 + MER1B DNA MER1_type 3 333 -6 443 336 99 25 chr1 169882335 169882495 -72781858 + L2 LINE L2 2317 2464 -850 1592 171 7 31 chr1 169882495 169882787 -72781566 - AluJo SINE Alu -22 290 6 443 336 99 25 chr1 169882787 169882980 -72781373 + L2 LINE L2 2464 2696 -618 1704 175 14 21 chr1 169882980 169883271 -72781082 - AluJo SINE Alu -23 289 1 4800 160 18 29 chr1 169883752 169884137 -72780216 + MER6 DNA MER2_type 2 389 -476 1572 180 0 45 chr1 169884137 169884426 -72779927 + AluJo SINE Alu 1 276 -36 4800 160 18 29 chr1 169884426 169884913 -72779440 + MER6 DNA MER2_type 389 865 0 949 251 25 4 chr1 169884919 169885162 -72779191 + MIR SINE MIR 15 262 0 1978 146 3 10 chr1 169885164 169885473 -72778880 - AluJo SINE Alu -4 308 2 480 48 0 0 chr1 169886245 169886308 -72778045 + (TA)n Simple_repeat Simple_repeat 2 64 0 192 77 0 0 chr1 169886529 169886555 -72777798 + (A)n Simple_repeat Simple_repeat 1 26 0 247 267 83 58 chr1 169888373 169888493 -72775860 + MER5A DNA MER1_type 64 186 -3 1029 285 181 9 chr1 169888541 169889070 -72775283 + L2 LINE L2 2396 3011 -302 677 213 0 0 chr1 169889086 169889208 -72775145 - FLAM_A SINE Alu -20 122 1 738 261 28 69 chr1 169889210 169889528 -72774825 + L2 LINE L2 2996 3300 -13 231 114 0 0 chr1 169889954 169889989 -72774364 + (GA)n Simple_repeat Simple_repeat 2 36 0 1007 121 0 0 chr1 169891555 169891704 -72772649 - L1MA5A LINE L1 -3 6294 6146 484 273 132 62 chr1 169892123 169892636 -72771717 + L2 LINE L2 2723 3269 -3 23 0 0 0 chr1 169892928 169892951 -72771402 + AT_rich Low_complexity Low_complexity 1 23 0 223 337 105 6 chr1 169893393 169893565 -72770788 - MER5A DNA MER1_type 0 189 1 200 86 29 0 chr1 169893689 169893724 -72770629 + (GA)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr1 169894290 169894313 -72770040 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2128 137 0 0 chr1 169894315 169894614 -72769739 - AluSx SINE Alu -13 299 1 221 308 62 77 chr1 169894779 169894909 -72769444 - L2 LINE L2 0 3272 3145 225 0 0 0 chr1 169895192 169895217 -72769136 + (T)n Simple_repeat Simple_repeat 1 25 0 328 320 72 39 chr1 169896255 169896408 -72767945 - L2 LINE L2 -8 3264 3107 405 0 0 0 chr1 169896595 169896640 -72767713 + (CA)n Simple_repeat Simple_repeat 2 46 0 238 179 0 0 chr1 169897084 169897123 -72767230 + MIR SINE MIR 154 192 -70 489 259 0 9 chr1 169897632 169897748 -72766605 + L2 LINE L2 3197 3311 -2 271 250 79 67 chr1 169897876 169898040 -72766313 - MIR3 SINE MIR -32 176 11 449 268 29 91 chr1 169898415 169898465 -72765888 - MIR SINE MIR -66 196 144 2399 90 3 0 chr1 169898465 169898764 -72765589 - AluSp SINE Alu -13 300 1 449 268 29 91 chr1 169898764 169898775 -72765578 - MIR SINE MIR -118 144 134 2143 120 10 7 chr1 169898775 169899083 -72765270 - AluSg SINE Alu -1 309 1 449 268 29 91 chr1 169899083 169899229 -72765124 - MIR SINE MIR -128 134 1 533 294 43 5 chr1 169900026 169900210 -72764143 + MIR SINE MIR 24 214 -48 1864 148 0 33 chr1 169900271 169900576 -72763777 - AluJo SINE Alu -17 295 1 671 261 40 11 chr1 169900718 169900912 -72763441 + MIR3 SINE MIR 6 207 -1 288 297 148 0 chr1 169901295 169901396 -72762957 - L2 LINE L2 -18 3254 3139 1338 161 0 0 chr1 169902516 169902727 -72761626 - AluY SINE Alu 0 311 101 1386 140 90 123 chr1 169902728 169903193 -72761160 - LTR7 LTR ERV1 0 450 1 2784 98 9 12 chr1 169903193 169903612 -72760741 - HERVH LTR ERV1 0 7713 7296 * 6948 133 10 10 chr1 169903592 169904840 -72759513 - HERVH LTR ERV1 -2287 4242 3804 2886 139 2 0 chr1 169904834 169905281 -72759072 - HERVH LTR ERV1 -4126 3587 3140 * 8002 137 2 16 chr1 169905260 169906534 -72757819 - HERVH LTR ERV1 -4718 2995 1740 319 114 0 0 chr1 169906672 169906716 -72757637 - MER11C LTR ERVK -1027 44 1 2277 158 69 2 chr1 169907007 169907400 -72756953 - MSTA LTR MaLR -9 419 1 1145 201 76 90 chr1 169907483 169907916 -72756437 + L1MEc LINE L1 1643 2069 -4327 5586 150 45 4 chr1 169907924 169908970 -72755383 - L1PA15 LINE L1 0 6165 5062 1084 215 65 21 chr1 169909074 169909353 -72755000 - HERVH LTR ERV1 -7422 291 1 1550 152 111 72 chr1 169909353 169909786 -72754567 - LTR7 LTR ERV1 0 450 1 585 137 42 0 chr1 169909788 169909883 -72754470 - AluJ/FLAM SINE Alu -211 101 3 254 286 71 24 chr1 169910326 169910452 -72753901 - MIR3 SINE MIR -35 173 42 305 220 17 0 chr1 169910689 169910748 -72753605 - L2 LINE L2 -10 3262 3203 1693 175 7 0 chr1 169910960 169911246 -72753107 + AluJb SINE Alu 4 291 -21 197 108 27 0 chr1 169911312 169911349 -72753004 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 719 156 78 0 chr1 169911355 169911483 -72752870 - AluJo/FRAM SINE Alu -31 281 144 339 89 0 0 chr1 169911483 169911528 -72752825 - Alu SINE Alu -247 55 11 937 120 38 25 chr1 169911586 169911744 -72752609 + L1PA16 LINE L1 6007 6166 0 426 264 28 0 chr1 169913246 169913352 -72751001 + L2 LINE L2 3205 3313 0 1843 127 68 22 chr1 169913498 169913820 -72750533 - MER1B DNA MER1_type 0 337 1 605 168 99 8 chr1 169913827 169913907 -72750446 - MER5A DNA MER1_type -42 147 49 1979 142 40 17 chr1 169913907 169914209 -72750144 - AluJb SINE Alu -3 309 1 605 168 99 8 chr1 169914209 169914259 -72750094 - MER5A DNA MER1_type -140 49 5 205 384 0 0 chr1 169914390 169914463 -72749890 + L2 LINE L2 2715 2787 -527 2328 95 0 10 chr1 169914470 169914766 -72749587 + AluSg SINE Alu 1 293 -17 263 332 96 50 chr1 169914794 169915171 -72749182 + L2 LINE L2 2919 3312 -1 508 274 8 0 chr1 169915475 169915599 -72748754 + L2 LINE L2 3148 3272 0 2203 101 3 3 chr1 169915763 169916075 -72748278 + AluSx SINE Alu 1 312 0 191 333 63 0 chr1 169916525 169916588 -72747765 - L2 LINE L2 -84 3188 3122 238 163 0 0 chr1 169918060 169918103 -72746250 - L1MB8 LINE L1 -9 6169 6127 186 43 0 0 chr1 169918558 169918581 -72745772 + (TTCCC)n Simple_repeat Simple_repeat 4 26 0 733 291 117 22 chr1 169919646 169920004 -72744349 + L2 LINE L2 2922 3313 0 370 330 64 31 chr1 169920071 169920541 -72743812 - L2 LINE L2 -221 3051 2572 258 251 286 12 chr1 169920618 169920789 -72743564 + MIR SINE MIR 20 237 -25 233 291 146 7 chr1 169920856 169921007 -72743346 - L2 LINE L2 -890 2424 2253 23 0 0 0 chr1 169921284 169921307 -72743046 + AT_rich Low_complexity Low_complexity 1 23 0 357 307 26 47 chr1 169921459 169921651 -72742702 - MIR SINE MIR -65 197 10 353 306 53 12 chr1 169921985 169922155 -72742198 + MIR SINE MIR 13 189 -73 2281 111 0 0 chr1 169922284 169922581 -72741772 - AluSg SINE Alu -13 297 1 2290 98 3 3 chr1 169922587 169922884 -72741469 - AluSg SINE Alu -13 297 1 894 226 44 40 chr1 169922950 169923198 -72741155 + MIR SINE MIR 8 256 -6 270 211 16 19 chr1 169923204 169923280 -72741073 - MIR SINE MIR -102 106 33 192 233 0 0 chr1 169923443 169923486 -72740867 + MIR SINE MIR 220 262 0 868 160 0 83 chr1 169925237 169925372 -72738981 - AluJo SINE Alu -21 291 171 2831 85 25 0 chr1 169925372 169925738 -72738615 - THE1C LTR MaLR 0 375 1 868 160 0 83 chr1 169925738 169925771 -72738582 - AluJo SINE Alu -141 171 137 1401 96 14 14 chr1 169925774 169925983 -72738370 - AluY SINE Alu -9 302 94 870 177 0 0 chr1 169925983 169926124 -72738229 - AluJo SINE Alu -171 141 1 249 237 62 0 chr1 169926206 169926303 -72738050 + L1MC4 LINE L1 6640 6742 -1300 559 181 0 9 chr1 169926372 169926488 -72737865 - L1MB3 LINE L1 0 6183 6069 531 170 20 0 chr1 169926475 169926575 -72737778 - L1MB4 LINE L1 -133 6047 5946 * 4459 129 41 3 chr1 169926605 169927335 -72737018 - L1MB2 LINE L1 -1 6170 5413 272 304 58 29 chr1 169928482 169928620 -72735733 + MIR3 SINE MIR 21 162 -46 652 285 83 13 chr1 169929277 169929505 -72734848 - MIR SINE MIR 0 262 19 292 278 104 9 chr1 169930072 169930187 -72734166 + L2 LINE L2 3134 3259 -13 489 210 48 16 chr1 169930226 169930350 -72734003 + MIR SINE MIR 86 213 -49 2107 107 7 0 chr1 169931270 169931570 -72732783 - AluSq SINE Alu 0 302 1 26 0 0 0 chr1 169931570 169931596 -72732757 + AT_rich Low_complexity Low_complexity 1 26 0 391 234 36 60 chr1 169931891 169931911 -72732442 - L1MA10 LINE L1 0 6334 6315 2581 184 59 9 chr1 169931911 169932453 -72731900 - L1ME1 LINE L1 -5 6161 5593 747 188 55 24 chr1 169932896 169933061 -72731292 - L1ME1 LINE L1 -555 5609 5440 16178 167 22 12 chr1 169933177 169937318 -72727035 + L1PB2 LINE L1 2684 6865 -2 317 309 61 57 chr1 169938898 169939514 -72724839 - L1MB5 LINE L1 -246 5928 5303 1531 157 25 85 chr1 169939514 169939833 -72724520 - AluJo SINE Alu -12 300 1 317 309 61 57 chr1 169939833 169939876 -72724477 - L1MB5 LINE L1 -871 5303 5262 471 303 148 0 chr1 169939876 169940031 -72724322 - MER5A DNA MER1_type -3 186 9 4934 149 36 5 chr1 169940136 169941415 -72722938 - L1MC2 LINE L1 -294 6050 4749 319 273 86 8 chr1 169941961 169942089 -72722264 + L2 LINE L2 2333 2470 -844 534 160 217 0 chr1 169942115 169942221 -72722132 + MER94 DNA DNA 6 134 0 227 324 71 55 chr1 169942322 169942504 -72721849 + L2 LINE L2 2602 2786 -528 452 251 206 23 chr1 169942799 169943018 -72721335 + MIR SINE MIR 1 259 -3 257 317 83 33 chr1 169943038 169943158 -72721195 + L2 LINE L2 3143 3268 -4 2510 121 45 36 chr1 169943211 169943440 -72720913 + L1MB3 LINE L1 5731 5956 -227 1430 137 59 0 chr1 169943440 169943659 -72720694 + MER46A DNA MER2_type 1 232 -4 2510 121 45 36 chr1 169943659 169943877 -72720476 + L1MB3 LINE L1 5956 6182 -1 2280 103 3 0 chr1 169945408 169945708 -72718645 - AluSx SINE Alu -11 301 1 330 248 131 7 chr1 169946242 169946387 -72717966 - L1MC4a LINE L1 -1898 5910 5748 825 321 128 34 chr1 169946433 169947364 -72716989 - L2 LINE L2 -109 3163 2148 307 270 95 16 chr1 169947562 169947688 -72716665 + MIR SINE MIR 77 212 -50 190 353 8 34 chr1 169947965 169948084 -72716269 + L3b LINE CR1 1122 1237 -346 347 263 127 0 chr1 169948462 169948580 -72715773 + MIR3 SINE MIR 15 147 -61 533 310 142 4 chr1 169949384 169949610 -72714743 + MIR SINE MIR 5 261 -1 213 328 0 17 chr1 169949650 169949708 -72714645 + L2 LINE L2 3150 3206 -66 420 314 55 10 chr1 169951021 169951184 -72713169 + MIR3 SINE MIR 17 185 -52 1885 236 31 13 chr1 169952005 169952462 -72711891 + MLT1C LTR MaLR 1 465 -2 188 292 221 0 chr1 169952579 169952692 -72711661 + L2 LINE L2 148 285 -3029 384 261 149 37 chr1 169952734 169952982 -72711371 + L2 LINE L2 427 704 -2610 365 241 5 141 chr1 169952982 169953117 -72711236 + MER5B DNA MER1_type 1 102 -76 2027 128 10 3 chr1 169953117 169953414 -72710939 - AluSx SINE Alu -8 304 6 365 241 5 141 chr1 169953414 169953477 -72710876 + MER5B DNA MER1_type 102 172 -6 1286 286 104 37 chr1 169953492 169954496 -72709857 + L2 LINE L2 714 3311 -2 724 256 18 48 chr1 169954587 169954610 -72709743 + MIR SINE MIR 33 55 -207 2415 60 3 0 chr1 169954610 169954895 -72709458 - AluY SINE Alu -25 286 1 724 256 18 48 chr1 169954895 169955098 -72709255 + MIR SINE MIR 55 252 -10 867 252 33 0 chr1 169955159 169955373 -72708980 - MIR SINE MIR -40 222 2 2051 116 31 0 chr1 169955683 169955975 -72708378 - AluSc SINE Alu -8 301 1 898 152 0 8 chr1 169956005 169956137 -72708216 - AluJo/FLAM SINE Alu -171 131 1 961 106 0 21 chr1 169956137 169956267 -72708086 - AluSg/x SINE Alu -9 303 175 248 195 221 106 chr1 169956961 169957029 -72707324 + MIR3 SINE MIR 34 93 -115 1858 179 7 0 chr1 169957029 169957326 -72707027 - AluJb SINE Alu -13 299 1 248 195 221 106 chr1 169957326 169957370 -72706983 + MIR3 SINE MIR 93 159 -49 1953 194 28 3 chr1 169957376 169957732 -72706621 + MLT1A1 LTR MaLR 1 365 0 39633 84 4 7 chr1 169957830 169963993 -72700360 - L1PA6 LINE L1 0 6154 11 1670 170 42 3 chr1 169964274 169964557 -72699796 - AluJb SINE Alu -18 294 1 234 325 53 48 chr1 169965224 169965412 -72698941 - L1MC/D LINE L1 -1928 5880 5692 193 300 12 62 chr1 169966624 169966704 -72697649 - L2 LINE L2 -63 3209 3134 320 254 164 22 chr1 169966709 169966843 -72697510 + MIR3 SINE MIR 15 167 -41 239 283 61 0 chr1 169968198 169968297 -72696056 + L2 LINE L2 2254 2358 -956 257 293 140 6 chr1 169968359 169968523 -72695830 + L2 LINE L2 3127 3312 -1 782 328 43 17 chr1 169968523 169968871 -72695482 - MLT1K LTR MaLR -229 359 3 202 269 57 109 chr1 169969022 169969215 -72695138 + L2 LINE L2 2838 3020 -252 252 143 0 0 chr1 169969223 169969265 -72695088 + (T)n Simple_repeat Simple_repeat 1 42 0 219 393 25 55 chr1 169969332 169969495 -72694858 + L2 LINE L2 3096 3253 -19 2484 113 48 20 chr1 169970034 169970388 -72693965 + THE1B LTR MaLR 1 364 0 1562 185 22 0 chr1 169971270 169971591 -72692762 - AluJo SINE Alu 0 327 1 603 239 128 26 chr1 169971708 169971934 -72692419 - MIR SINE MIR -10 252 4 311 320 36 64 chr1 169972005 169972224 -72692129 - MIR SINE MIR -3 259 47 218 167 0 0 chr1 169972823 169972859 -72691494 + (TG)n Simple_repeat Simple_repeat 2 37 0 744 230 92 32 chr1 169973296 169973513 -72690840 - MIR SINE MIR 0 262 33 431 267 9 35 chr1 169974688 169974804 -72689549 - L2 LINE L2 -1 3312 3200 795 346 118 37 chr1 169975024 169976102 -72688251 + L2 LINE L2 1462 2626 -688 393 346 38 0 chr1 169976242 169976375 -72687978 + L2 LINE L2 3134 3271 -1 478 266 29 7 chr1 169976552 169976691 -72687662 - L1ME4a LINE L1 -17 6104 5963 1930 180 21 40 chr1 169976923 169977295 -72687058 - MLT1A1 LTR MaLR 0 365 1 477 143 0 0 chr1 169978068 169978138 -72686215 + MER63 DNA MER1_type 676 745 -317 393 172 0 97 chr1 169978145 169978238 -72686115 + MER63 DNA MER1_type 977 1060 0 387 304 43 9 chr1 169978255 169978370 -72685983 + MIR3 SINE MIR 74 192 -16 2204 123 0 3 chr1 169978636 169978936 -72685417 + AluSg SINE Alu 1 299 -11 193 255 0 0 chr1 169979130 169979177 -72685176 + L2 LINE L2 3267 3313 0 388 223 217 19 chr1 169979561 169979718 -72684635 - MIR SINE MIR -25 237 50 474 301 156 5 chr1 169981393 169981579 -72682774 - MIR SINE MIR -13 249 36 238 274 0 16 chr1 169982386 169982448 -72681905 + CT-rich Low_complexity Low_complexity 3 63 0 226 286 16 16 chr1 169982784 169982847 -72681506 + L2 LINE L2 3207 3269 -3 1919 110 13 40 chr1 169983141 169983442 -72680911 + AluSx SINE Alu 1 293 -19 372 141 0 0 chr1 169986325 169986396 -72677957 - L1MC3 LINE L1 0 7785 7715 2197 96 0 0 chr1 169986400 169986692 -72677661 - AluSg SINE Alu -18 292 1 2115 108 0 3 chr1 169986884 169987190 -72677163 - AluSx SINE Alu -7 305 1 1675 161 6 35 chr1 169987249 169987560 -72676793 - AluJo SINE Alu -10 302 1 41 98 0 0 chr1 169987774 169987825 -72676528 + GC_rich Low_complexity Low_complexity 1 51 0 1911 135 14 17 chr1 169987890 169988179 -72676174 + AluSc SINE Alu 3 290 -19 431 288 75 25 chr1 169988214 169988374 -72675979 - MIR SINE MIR -94 168 1 261 303 33 51 chr1 169990434 169990632 -72673721 + MIR SINE MIR 12 207 -55 568 228 215 18 chr1 169990815 169991034 -72673319 - MIR SINE MIR 0 262 1 375 249 109 42 chr1 169991034 169991113 -72673240 + MIR3 SINE MIR 96 185 -23 667 258 35 23 chr1 169992230 169992486 -72671867 - L1ME LINE L1 -322 5799 5541 1846 152 43 3 chr1 169992524 169992846 -72671507 - MER47A DNA MER2_type -1 365 31 24 77 0 0 chr1 169992952 169993004 -72671349 + AT_rich Low_complexity Low_complexity 1 52 0 1433 255 74 23 chr1 169993077 169993184 -72671169 - L1MC4a LINE L1 -1853 5955 5855 1144 238 35 52 chr1 169993184 169993528 -72670825 - MER58B DNA MER1_type -3 338 1 1433 255 74 23 chr1 169993528 169993906 -72670447 - L1MC4a LINE L1 -1953 5855 5445 1883 113 32 3 chr1 169993908 169994192 -72670161 + AluSx SINE Alu 2 293 -19 849 144 7 0 chr1 169994196 169994335 -72670018 - AluJo SINE Alu -172 140 1 189 0 0 0 chr1 169994361 169994382 -72669971 + (CAATT)n Simple_repeat Simple_repeat 3 23 0 1120 144 19 23 chr1 169994659 169994874 -72669479 - L1MA8 LINE L1 -3 6288 6075 2157 113 0 0 chr1 169996245 169996545 -72667808 + AluSq SINE Alu 3 302 -11 521 290 129 14 chr1 169997739 169997956 -72666397 - MIR SINE MIR -1 261 20 519 273 68 56 chr1 169998093 169998507 -72665846 - HAL1b LINE L1 -881 467 49 788 153 17 11 chr1 169998507 169998683 -72665670 + CT-rich Low_complexity Low_complexity 3 179 0 185 200 73 55 chr1 169999612 169999667 -72664686 - MIR3 SINE MIR -51 157 102 280 301 84 14 chr1 169999855 169999998 -72664355 + MIR SINE MIR 103 255 -7 195 42 0 0 chr1 169999999 170000023 -72664330 + (TC)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr1 170000117 170000164 -72664189 + (TG)n Simple_repeat Simple_repeat 2 48 0 182 326 43 22 chr1 170000216 170000354 -72663999 + MIR SINE MIR 121 261 -1 261 0 0 0 chr1 170000596 170000625 -72663728 + (TG)n Simple_repeat Simple_repeat 2 30 0 577 303 26 5 chr1 170000642 170000837 -72663516 - MIR SINE MIR -13 249 51 201 278 100 22 chr1 170001041 170001131 -72663222 + MIR SINE MIR 116 212 -50 204 40 0 0 chr1 170001379 170001404 -72662949 + (TATG)n Simple_repeat Simple_repeat 3 27 0 545 149 9 0 chr1 170001741 170001855 -72662498 + C-rich Low_complexity Low_complexity 1 115 0 250 267 0 53 chr1 170002461 170002536 -72661817 - MIR SINE MIR -6 256 186 570 259 77 61 chr1 170003761 170004008 -72660345 - MIR SINE MIR -10 252 2 309 267 86 17 chr1 170005685 170005801 -72658552 + MIR SINE MIR 118 241 -21 180 152 0 0 chr1 170006006 170006039 -72658314 + (CAA)n Simple_repeat Simple_repeat 3 35 0 1115 76 0 0 chr1 170006102 170006247 -72658106 - L1PA8 LINE L1 -6 6166 6022 253 268 43 0 chr1 170006477 170006547 -72657806 - MIR SINE MIR -62 146 102 753 260 36 7 chr1 170006576 170006787 -72657566 - MIR SINE MIR -44 218 7 1924 123 53 0 chr1 170006860 170007145 -72657208 - AluSx SINE Alu -10 302 3 476 257 115 40 chr1 170008392 170008540 -72655813 + MER5A DNA MER1_type 31 189 0 257 282 35 0 chr1 170008718 170008803 -72655550 + CT-rich Low_complexity Low_complexity 2 89 0 5353 149 32 10 chr1 170010910 170011813 -72652540 - MER49 LTR ERV1 0 923 1 453 269 105 53 chr1 170013878 170014201 -72650152 - L1ME4a LINE L1 0 6121 5782 746 293 217 7 chr1 170014206 170014645 -72649708 - L2 LINE L2 0 3313 2782 213 189 0 0 chr1 170014707 170014744 -72649609 + CT-rich Low_complexity Low_complexity 3 39 0 1069 222 10 0 chr1 170014832 170015035 -72649318 + MIR SINE MIR 37 241 -21 1355 168 90 4 chr1 170015140 170015408 -72648945 + L1MB4 LINE L1 5890 6180 0 182 287 132 31 chr1 170015664 170015793 -72648560 + MIR3 SINE MIR 1 142 -66 243 266 0 16 chr1 170016946 170017010 -72647343 - L1MDa LINE L1 -5576 964 902 1769 183 12 72 chr1 170017173 170017588 -72646765 - MLT1B LTR MaLR 0 390 1 4910 122 33 19 chr1 170017963 170018772 -72645581 - L1PB3 LINE L1 -7 6147 5327 253 160 0 0 chr1 170018773 170018823 -72645530 + L1P LINE L1 5263 5312 -839 512 275 203 5 chr1 170019029 170019236 -72645117 + MIR SINE MIR 15 262 0 680 271 55 35 chr1 170021206 170021405 -72642948 + MIR SINE MIR 35 237 -25 2626 144 21 14 chr1 170021407 170021838 -72642515 + Tigger2a DNA MER2_type 1 434 0 493 303 78 35 chr1 170024189 170024420 -72639933 - L3b LINE CR1 -119 1464 1224 649 232 168 36 chr1 170024520 170024740 -72639613 - MIR SINE MIR 0 262 14 227 358 0 0 chr1 170024822 170024889 -72639464 - L2 LINE L2 -84 3188 3122 193 197 421 0 chr1 170026352 170026428 -72637925 - L2 LINE L2 -10 3262 3155 427 237 189 37 chr1 170026723 170026913 -72637440 - MIR SINE MIR 0 262 44 * 574 273 61 0 chr1 170026911 170027076 -72637277 - MIR SINE MIR -50 212 38 279 391 23 23 chr1 170027242 170027370 -72636983 + L2 LINE L2 3123 3250 -22 216 374 11 0 chr1 170027481 170027572 -72636781 + L2 LINE L2 3222 3313 0 187 375 0 0 chr1 170029661 170029733 -72634620 + L2 LINE L2 3201 3272 0 3135 39 0 0 chr1 170031604 170031967 -72632386 - L1PA3 LINE L1 -3 6152 5790 1451 274 53 41 chr1 170032051 170032078 -72632275 + MLT1L LTR MaLR 1 26 -589 1682 211 120 20 chr1 170032078 170032537 -72631816 - MLT1D LTR MaLR 0 505 1 1451 274 53 41 chr1 170032537 170033097 -72631256 + MLT1L LTR MaLR 26 595 -20 2077 218 90 35 chr1 170033319 170033976 -72630377 - L2 LINE L2 -6 3307 2687 2168 107 0 4 chr1 170033976 170034256 -72630097 + AluSg SINE Alu 1 279 -31 228 35 0 0 chr1 170034259 170034288 -72630065 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2077 218 90 35 chr1 170034288 170034623 -72629730 - L2 LINE L2 -627 2686 2257 262 330 140 4 chr1 170034761 170034997 -72629356 + L2 LINE L2 2911 3178 -94 210 37 0 0 chr1 170036401 170036428 -72627925 + (TG)n Simple_repeat Simple_repeat 1 27 0 432 118 0 0 chr1 170037096 170037164 -72627189 + (TCC)n Simple_repeat Simple_repeat 3 70 0 2102 139 3 0 chr1 170037166 170037467 -72626886 - AluSx SINE Alu -10 302 1 193 254 0 32 chr1 170037636 170037699 -72626654 - L2 LINE L2 -213 3059 2999 249 250 98 36 chr1 170038076 170038188 -72626165 + MIR SINE MIR 35 153 -55 663 129 90 58 chr1 170038689 170038844 -72625509 + MER106B DNA MER1_type 896 1055 -4 321 273 70 23 chr1 170039103 170039117 -72625236 + MIR SINE MIR 34 46 -216 2336 106 30 38 chr1 170039117 170039484 -72624869 - THE1B LTR MaLR 0 364 1 321 273 70 23 chr1 170039484 170039597 -72624756 + MIR SINE MIR 46 167 -95 363 96 0 0 chr1 170039747 170039799 -72624554 + (TCCCC)n Simple_repeat Simple_repeat 2 53 0 285 271 0 0 chr1 170040342 170040412 -72623941 - L2 LINE L2 0 3272 3203 389 284 43 0 chr1 170040968 170041109 -72623244 + L2 LINE L2 2939 3085 -228 263 254 0 0 chr1 170041117 170041180 -72623173 + L2 LINE L2 3251 3313 0 284 256 93 16 chr1 170041259 170041388 -72622965 - L2 LINE L2 -2 3311 3173 459 213 125 7 chr1 170041411 170041547 -72622806 - MIR SINE MIR 0 262 111 255 291 149 68 chr1 170043688 170043836 -72620517 + MIR SINE MIR 32 191 -71 963 277 59 60 chr1 170044052 170044213 -72620140 + MLT1L LTR MaLR 3 163 -452 698 199 88 44 chr1 170044213 170044394 -72619959 - MER5A DNA MER1_type 0 189 1 963 277 59 60 chr1 170044394 170044804 -72619549 + MLT1L LTR MaLR 163 613 -2 973 169 41 149 chr1 170045604 170045769 -72618584 - MER33 DNA MER1_type -2262 323 217 851 137 64 137 chr1 170045769 170046003 -72618350 + MER20 DNA MER1_type 3 219 0 973 169 41 149 chr1 170046003 170046199 -72618154 - MER33 DNA MER1_type -2368 217 1 219 323 20 10 chr1 170047393 170047492 -72616861 - L3b LINE CR1 -94 1489 1390 669 326 28 71 chr1 170047950 170048373 -72615980 - L2 LINE L2 0 3272 2868 271 262 84 19 chr1 170048685 170048792 -72615561 + L2 LINE L2 3141 3254 -18 2118 81 0 0 chr1 170048876 170049154 -72615199 - AluY SINE Alu 0 300 23 534 245 120 6 chr1 170050028 170050219 -72614134 + MIR SINE MIR 39 246 -16 2586 50 3 0 chr1 170050584 170050881 -72613472 - AluY SINE Alu -13 298 1 204 328 16 49 chr1 170051667 170051789 -72612564 - MIR SINE MIR -74 134 17 21 36 0 0 chr1 170053675 170053703 -72610650 + AT_rich Low_complexity Low_complexity 1 28 0 410 315 75 6 chr1 170054639 170054998 -72609355 - L1M4 LINE L1 -517 5657 5256 2079 169 31 0 chr1 170055073 170055458 -72608895 - L1MD3 LINE L1 -9 7986 7590 6101 151 12 23 chr1 170055473 170056301 -72608052 - L1PA16 LINE L1 -9 6860 6053 1455 126 34 0 chr1 170056301 170056508 -72607845 - AluSg/x SINE Alu -23 287 74 6101 151 12 23 chr1 170056508 170057275 -72607078 - L1PA16 LINE L1 -816 6053 5279 7304 162 16 28 chr1 170057295 170058487 -72605866 - L1PA16 LINE L1 -5661 1188 90 798 152 0 131 chr1 170058487 170058678 -72605675 - FRAM SINE Alu 0 166 1 7304 162 16 28 chr1 170058678 170058767 -72605586 - L1PA16 LINE L1 -6759 90 1 1182 167 15 0 chr1 170058771 170058969 -72605384 - L1MD3 LINE L1 -391 7604 7404 485 214 0 0 chr1 170058971 170059060 -72605293 - MLT1F1 LTR MaLR -443 124 36 941 271 72 12 chr1 170059285 170059617 -72604736 - L1MC4 LINE L1 -596 7446 7095 480 270 20 7 chr1 170059793 170059941 -72604412 + MIR SINE MIR 100 249 -13 472 267 82 23 chr1 170059941 170060338 -72604015 - L1M4c LINE L1 -3688 2694 2277 500 342 4 13 chr1 170060450 170060687 -72603666 - HAL1 LINE L1 -846 1661 1427 24 32 0 0 chr1 170060723 170060754 -72603599 + AT_rich Low_complexity Low_complexity 1 31 0 2374 145 15 15 chr1 170061013 170061407 -72602946 - Tigger5 DNA MER2_type 0 2323 1930 650 155 60 9 chr1 170061406 170061522 -72602831 - Tigger5 DNA MER2_type -2200 123 2 * 2783 156 18 22 chr1 170062125 170062670 -72601683 + L1MA5 LINE L1 5758 6300 0 1081 245 103 57 chr1 170062955 170063478 -72600875 - MLT1H LTR MaLR -2 547 1 205 305 37 12 chr1 170063779 170063861 -72600492 - L2 LINE L2 -4 3309 3226 464 245 85 71 chr1 170064562 170064774 -72599579 - MER20 DNA MER1_type -4 215 1 462 323 115 58 chr1 170065843 170066487 -72597866 + L2 LINE L2 2577 3257 -15 378 0 0 0 chr1 170066819 170066861 -72597492 + (TG)n Simple_repeat Simple_repeat 2 43 0 1091 228 4 0 chr1 170066996 170067229 -72597124 - MIR SINE MIR -1 261 28 414 280 135 5 chr1 170067666 170067859 -72596494 - MIR SINE MIR -29 233 16 190 259 19 0 chr1 170069518 170069572 -72594781 - MIR3 SINE MIR -31 177 123 282 316 23 30 chr1 170069938 170070071 -72594282 - MIR3 SINE MIR -63 145 14 25 31 0 0 chr1 170071037 170071069 -72593284 + AT_rich Low_complexity Low_complexity 1 32 0 2438 88 0 0 chr1 170071108 170071413 -72592940 + AluSx SINE Alu 1 305 -7 478 259 61 14 chr1 170071565 170071712 -72592641 - MIR SINE MIR -73 189 36 302 284 156 50 chr1 170072078 170072360 -72591993 - L2 LINE L2 -47 3225 2914 2196 134 33 38 chr1 170072451 170072817 -72591536 - THE1B LTR MaLR 0 364 1 367 171 12 24 chr1 170074403 170074485 -72589868 - MIR SINE MIR -111 151 71 2501 146 44 111 chr1 170074503 170074657 -72589696 + L1MB8 LINE L1 5565 5728 -450 1788 161 0 4 chr1 170074657 170074931 -72589422 - AluJo SINE Alu -22 290 18 2501 146 44 111 chr1 170074931 170075434 -72588919 + L1MB8 LINE L1 5728 6178 0 257 285 128 58 chr1 170075548 170075720 -72588633 - MIR SINE MIR -8 254 71 681 276 44 16 chr1 170075788 170076038 -72588315 + MIR SINE MIR 5 261 -1 192 152 0 0 chr1 170076663 170076696 -72587657 + GA-rich Low_complexity Low_complexity 2 34 0 282 265 0 29 chr1 170076790 170076858 -72587495 + L2 LINE L2 3207 3272 0 635 180 22 73 chr1 170077050 170077228 -72587125 + MER5B DNA MER1_type 10 178 0 355 250 0 0 chr1 170079580 170079648 -72584705 - L2 LINE L2 0 3313 3246 1592 163 47 132 chr1 170079710 170079877 -72584476 - MLT1C LTR MaLR -1 466 286 5421 82 79 61 chr1 170079877 170080392 -72583961 + L1PA16 LINE L1 4953 5457 -709 207 0 0 0 chr1 170080392 170080415 -72583938 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5421 82 79 61 chr1 170080415 170081082 -72583271 + L1PA16 LINE L1 5457 6157 -9 1592 163 47 132 chr1 170081082 170081423 -72582930 - MLT1C LTR MaLR -181 286 1 290 197 457 8 chr1 170081574 170081701 -72582652 - MIR SINE MIR -14 248 65 384 219 70 26 chr1 170082028 170082142 -72582211 + L2 LINE L2 3191 3309 -4 225 0 0 0 chr1 170082460 170082485 -72581868 + (T)n Simple_repeat Simple_repeat 1 25 0 443 259 134 56 chr1 170082827 170083043 -72581310 + MIR SINE MIR 8 240 -22 1428 201 94 183 chr1 170083098 170083629 -72580724 - MLT1E2 LTR MaLR 0 626 22 256 308 0 0 chr1 170083720 170083785 -72580568 + MIR SINE MIR 198 262 0 359 308 132 62 chr1 170083845 170084118 -72580235 + L2 LINE L2 2981 3272 0 21 36 0 0 chr1 170084124 170084152 -72580201 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr1 170084569 170084589 -72579764 + (T)n Simple_repeat Simple_repeat 1 20 0 402 369 28 14 chr1 170085312 170085453 -72578900 - L2 LINE L2 -8 3264 3122 190 333 53 0 chr1 170085543 170085600 -72578753 + L2 LINE L2 3235 3294 -19 382 325 158 39 chr1 170086070 170086515 -72577838 + L2 LINE L2 2788 3271 -1 2074 259 99 24 chr1 170086852 170087926 -72576427 - L2 LINE L2 -6 3307 2144 207 0 0 0 chr1 170087926 170087949 -72576404 + (GAGAA)n Simple_repeat Simple_repeat 3 25 0 2074 259 99 24 chr1 170087949 170087968 -72576385 - L2 LINE L2 -1169 2144 2128 2157 68 0 4 chr1 170088305 170088568 -72575785 - L1PA7 LINE L1 -6 6148 5887 255 318 153 36 chr1 170088571 170088845 -72575508 - L2 LINE L2 -572 2742 2437 890 264 79 24 chr1 170089630 170089984 -72574369 + MLT1I LTR MaLR 3 425 -25 299 223 268 0 chr1 170090042 170090154 -72574199 - L1ME4a LINE L1 -4 6117 5976 914 236 74 62 chr1 170090197 170090703 -72573650 - L1ME4a LINE L1 -265 5856 5340 216 0 0 0 chr1 170092898 170092922 -72571431 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 2142 108 3 0 chr1 170092932 170093220 -72571133 - AluSq SINE Alu -24 289 1 289 125 0 0 chr1 170093280 170093320 -72571033 - Alu SINE Alu -261 40 1 1262 72 0 12 chr1 170094026 170094192 -72570161 - L1PA6 LINE L1 0 6154 5991 364 256 23 0 chr1 170094356 170094442 -72569911 - MLT1E3 LTR MaLR -447 177 90 * 815 115 65 7 chr1 170094365 170094504 -72569849 - MLT2C1 LTR ERVL -250 147 1 2467 126 25 6 chr1 170094879 170095236 -72569117 + THE1B LTR MaLR 1 364 0 444 19 0 0 chr1 170095606 170095659 -72568694 + (CA)n Simple_repeat Simple_repeat 2 54 0 345 47 0 0 chr1 170095818 170095861 -72568492 + (TG)n Simple_repeat Simple_repeat 1 43 0 481 273 215 24 chr1 170096473 170096682 -72567671 + MIR SINE MIR 14 262 0 961 297 46 32 chr1 170097069 170097503 -72566850 - MLT1J2 LTR MaLR -2 448 9 275 226 43 54 chr1 170099923 170100016 -72564337 - MIR SINE MIR -66 196 105 356 227 118 70 chr1 170100038 170100209 -72564144 - MLT1H LTR MaLR -26 517 330 204 40 0 0 chr1 170100209 170100234 -72564119 + (TG)n Simple_repeat Simple_repeat 1 25 0 356 227 118 70 chr1 170100234 170100291 -72564062 - MLT1H LTR MaLR -213 330 277 1723 259 79 24 chr1 170100304 170100629 -72563724 + MLT1G1 LTR MaLR 21 389 -206 204 40 0 0 chr1 170100629 170100654 -72563699 + (TGAG)n Simple_repeat Simple_repeat 4 28 0 1723 259 79 24 chr1 170100654 170100873 -72563480 + MLT1G1 LTR MaLR 389 595 0 301 241 25 13 chr1 170100882 170100961 -72563392 - MLT1H LTR MaLR -247 302 223 223 233 0 0 chr1 170100961 170101004 -72563349 + GA-rich Low_complexity Low_complexity 2 44 0 868 227 84 0 chr1 170101004 170101207 -72563146 - MLT1H LTR MaLR -316 233 14 250 287 64 48 chr1 170102148 170102336 -72562017 - L2 LINE L2 -227 3045 2855 463 316 140 12 chr1 170102360 170102689 -72561664 - L2 LINE L2 -631 2683 2313 353 259 160 23 chr1 170103158 170103327 -72561026 - MIR3 SINE MIR -65 143 3 13545 36 1 0 chr1 170103988 170106299 -72558054 - L1PA4 LINE L1 -3 6152 3841 28 29 0 0 chr1 170106426 170106461 -72557892 + AT_rich Low_complexity Low_complexity 1 35 0 263 310 101 31 chr1 170107238 170107367 -72556986 + MIR3 SINE MIR 4 141 -67 581 220 204 0 chr1 170108691 170108877 -72555476 + MIR SINE MIR 38 261 -1 3147 171 44 57 chr1 170108952 170109655 -72554698 - LTR8A LTR ERV1 0 727 34 210 37 0 0 chr1 170110070 170110097 -72554256 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 125 0 0 chr1 170111665 170111697 -72552656 + (GA)n Simple_repeat Simple_repeat 1 32 0 364 171 197 17 chr1 170112000 170112117 -72552236 + MIR SINE MIR 125 262 0 365 343 102 14 chr1 170112937 170113153 -72551200 + MIR SINE MIR 20 254 -8 1252 337 206 15 chr1 170114468 170115457 -72548896 + L2 LINE L2 1788 2965 -349 360 316 23 0 chr1 170115480 170115613 -72548740 - MIR SINE MIR -13 249 114 194 280 107 27 chr1 170115625 170115700 -72548653 + L2 LINE L2 2962 3042 -271 1331 209 16 42 chr1 170116094 170116400 -72547953 - AluJo SINE Alu -4 298 1 9645 154 21 1 chr1 170116413 170118815 -72545538 - L1PA13 LINE L1 -2 7599 5184 7949 215 40 21 chr1 170118820 170121509 -72542844 - L1PA13 LINE L1 -3303 4281 726 * 16988 101 15 7 chr1 170121507 170123829 -72540524 + L1P LINE L1 1406 3750 -2396 2142 110 0 26 chr1 170123829 170124139 -72540214 + AluSx SINE Alu 1 302 -10 16988 101 15 7 chr1 170124139 170124301 -72540052 + L1P LINE L1 3750 3909 -2237 21 57 0 0 chr1 170124374 170124409 -72539944 + AT_rich Low_complexity Low_complexity 1 35 0 671 85 0 0 chr1 170125356 170125450 -72538903 - MER53 DNA DNA -1 188 95 22 0 0 0 chr1 170125552 170125574 -72538779 + AT_rich Low_complexity Low_complexity 1 22 0 7492 68 14 5 chr1 170125585 170126780 -72537573 - L1PA8 LINE L1 0 6172 4973 13544 104 7 1 chr1 170126880 170128810 -72535543 - L1PA8 LINE L1 -1334 4812 2870 432 276 103 0 chr1 170128818 170128974 -72535379 + MIR SINE MIR 70 241 -21 565 262 87 16 chr1 170129610 170129842 -72534511 - MIR SINE MIR 0 262 8 465 247 48 54 chr1 170130803 170130989 -72533364 - MIR SINE MIR -53 155 18 194 337 54 11 chr1 170133785 170133877 -72530476 - MIR SINE MIR -117 145 50 372 300 118 27 chr1 170135264 170135484 -72528869 - MIR SINE MIR -20 242 3 685 293 31 9 chr1 170135642 170135871 -72528482 - MIR SINE MIR 0 262 29 1911 107 8 0 chr1 170136117 170136378 -72527975 + AluSx SINE Alu 39 301 -11 436 284 204 6 chr1 170138452 170138628 -72525725 + MIR SINE MIR 27 237 -25 232 311 74 8 chr1 170139093 170139215 -72525138 + L3 LINE CR1 734 863 -714 315 0 0 0 chr1 170139215 170139250 -72525103 + (TG)n Simple_repeat Simple_repeat 2 36 0 1966 291 85 21 chr1 170139280 170140172 -72524181 + L2 LINE L2 1520 2468 -846 3134 204 34 28 chr1 170140222 170140869 -72523484 + MER82 DNA MER2_type 2 652 -1 263 261 14 29 chr1 170140886 170140955 -72523398 - L2 LINE L2 -42 3230 3163 796 335 109 32 chr1 170140983 170141687 -72522666 + L2 LINE L2 2534 3313 0 417 350 98 0 chr1 170142162 170142365 -72521988 + L3 LINE CR1 1294 1516 -61 195 296 0 37 chr1 170142384 170142438 -72521915 + MER5A DNA MER1_type 7 58 -131 1448 213 63 10 chr1 170142694 170143032 -72521321 + MLT2C1 LTR ERVL 3 424 -40 200 191 12 60 chr1 170143032 170143116 -72521237 + (TA)n Simple_repeat Simple_repeat 2 81 0 180 77 0 0 chr1 170143117 170143143 -72521210 + (CA)n Simple_repeat Simple_repeat 1 26 0 1810 256 100 18 chr1 170143249 170144405 -72519948 - L1MDa LINE L1 -3373 3167 1911 25 31 0 0 chr1 170144405 170144437 -72519916 + AT_rich Low_complexity Low_complexity 1 32 0 42327 46 3 2 chr1 170144437 170150380 -72513973 - L1PA5 LINE L1 -11 6143 190 4789 77 2 0 chr1 170150481 170151101 -72513252 - L1P LINE L1 -5525 621 1 354 61 0 0 chr1 170151179 170151228 -72513125 + (TC)n Simple_repeat Simple_repeat 2 50 0 673 254 60 30 chr1 170151989 170152221 -72512132 + MIR SINE MIR 15 253 -9 311 284 173 19 chr1 170152561 170152723 -72511630 + MIR SINE MIR 20 206 -56 505 257 0 43 chr1 170153708 170153848 -72510505 + MER5A DNA MER1_type 10 143 -46 441 245 10 37 chr1 170154279 170154404 -72509949 + MER5B DNA MER1_type 67 176 -2 259 222 0 16 chr1 170155164 170155227 -72509126 + CT-rich Low_complexity Low_complexity 2 63 0 598 279 111 5 chr1 170156909 170157117 -72507236 + MIR SINE MIR 33 262 0 475 313 47 33 chr1 170157610 170157821 -72506532 + MIR SINE MIR 48 261 -1 340 284 11 0 chr1 170157828 170157916 -72506437 + L2 LINE L2 3225 3313 0 306 0 0 0 chr1 170158931 170158965 -72505388 + (A)n Simple_repeat Simple_repeat 1 34 0 260 256 93 47 chr1 170159028 170159114 -72505239 - MIR SINE MIR -88 120 31 453 280 159 11 chr1 170159428 170159617 -72504736 + MIR SINE MIR 34 250 -12 602 49 12 0 chr1 170159695 170159777 -72504576 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 390 339 90 16 chr1 170159796 170159985 -72504368 - L2 LINE L2 -2 3270 3068 268 259 0 0 chr1 170160017 170160075 -72504278 - L2 LINE L2 -5 3267 3210 259 336 82 41 chr1 170161545 170161667 -72502686 + L2 LINE L2 3115 3241 -31 875 302 69 0 chr1 170162680 170162925 -72501428 + L2 LINE L2 2497 2758 -556 315 0 0 0 chr1 170162968 170163003 -72501350 + (CA)n Simple_repeat Simple_repeat 2 36 0 1181 218 40 27 chr1 170163042 170163342 -72501011 - MLT2D LTR ERVL -41 479 68 777 215 6 51 chr1 170163351 170163528 -72500825 - ERVL-D LTR ERVL -9 5755 5587 241 276 195 0 chr1 170163549 170163636 -72500717 - MIR SINE MIR -138 124 21 265 292 150 8 chr1 170163642 170163762 -72500591 + L2 LINE L2 3136 3272 0 428 316 110 29 chr1 170163874 170164083 -72500270 + MIR SINE MIR 35 260 -2 2634 275 58 34 chr1 170164682 170165822 -72498531 - L2 LINE L2 -217 3096 1921 582 271 106 13 chr1 170165827 170166098 -72498255 + L1ME2 LINE L1 5685 5977 -193 628 277 45 21 chr1 170166314 170166556 -72497797 - L2 LINE L2 -1365 1949 1702 460 318 138 0 chr1 170167226 170167415 -72496938 - MIR SINE MIR -27 235 21 379 252 36 9 chr1 170168493 170168604 -72495749 - MIR SINE MIR -71 191 78 356 341 104 37 chr1 170170397 170170828 -72493525 - L2 LINE L2 -2692 622 163 340 321 0 0 chr1 170171628 170171709 -72492644 + L2 LINE L2 3186 3266 -6 2840 222 27 10 chr1 170173117 170174172 -72490181 - L1M4 LINE L1 -2239 3907 2733 732 174 158 15 chr1 170174475 170174671 -72489682 - MARNA DNA Mariner -343 243 20 241 306 142 35 chr1 170175151 170175282 -72489071 - MLT1I LTR MaLR -26 383 268 2514 72 0 3 chr1 170175282 170175589 -72488764 + AluY SINE Alu 1 306 -5 241 306 142 35 chr1 170175589 170175689 -72488664 - MLT1I LTR MaLR -141 268 127 4239 161 32 18 chr1 170176873 170177658 -72486695 - L1MA7 LINE L1 -11 6280 5485 1864 125 16 22 chr1 170177663 170177974 -72486379 + THE1C LTR MaLR 67 375 0 922 181 35 35 chr1 170177974 170178228 -72486125 - L1MA7 LINE L1 -810 5336 5083 848 283 39 41 chr1 170178222 170178666 -72485687 - L1ME LINE L1 -509 5657 5215 * 267 314 65 59 chr1 170178947 170179456 -72484897 - L1ME LINE L1 -1337 4809 4298 30 83 0 0 chr1 170179662 170179734 -72484619 + AT_rich Low_complexity Low_complexity 1 72 0 432 326 65 15 chr1 170180626 170180868 -72483485 + MIR SINE MIR 6 250 -12 675 191 26 127 chr1 170181649 170181916 -72482437 + MER112 DNA MER1_type 21 260 0 5076 224 78 25 chr1 170182014 170182844 -72481509 + L1MD1 LINE L1 27 811 -5729 1614 157 195 19 chr1 170182844 170183208 -72481145 - MSTA LTR MaLR 0 428 1 5076 224 78 25 chr1 170183208 170183595 -72480758 + L1MD1 LINE L1 811 1176 -5364 2473 75 0 3 chr1 170183595 170183902 -72480451 + AluY SINE Alu 1 306 -5 5076 224 78 25 chr1 170183902 170184224 -72480129 + L1MD1 LINE L1 1176 1650 -4890 522 166 17 77 chr1 170184241 170184422 -72479931 + L1MB4 LINE L1 3797 3966 -2180 4458 194 64 22 chr1 170184479 170186269 -72478084 + L1MB4 LINE L1 4304 6179 -1 372 230 79 75 chr1 170186392 170186670 -72477683 + L1MC5 LINE L1 6923 7201 -760 305 326 0 0 chr1 170186745 170186874 -72477479 + L1MC4a LINE L1 7287 7415 -393 * 2926 209 88 26 chr1 170186872 170188816 -72475537 + L1MD1 LINE L1 4564 6618 -18 254 215 203 13 chr1 170188821 170188900 -72475453 + MIR SINE MIR 44 137 -71 7747 53 29 2 chr1 170192258 170198236 -72466117 + L1PA2 LINE L1 11 6151 -4 222 37 0 0 chr1 170198247 170198274 -72466079 + (A)n Simple_repeat Simple_repeat 1 27 0 374 253 207 0 chr1 170199556 170199706 -72464647 + MER5A DNA MER1_type 4 189 0 215 296 12 12 chr1 170199803 170199884 -72464469 - MIR SINE MIR 0 262 182 326 154 0 46 chr1 170200398 170200463 -72463890 - MIR3 SINE MIR -132 76 15 189 368 62 35 chr1 170201067 170201211 -72463142 + L2 LINE L2 3123 3270 -2 241 292 33 58 chr1 170201913 170202033 -72462320 - MIR SINE MIR -78 184 68 1781 207 75 6 chr1 170202324 170202817 -72461536 - MER69 DNA AcHobo 0 2526 2000 1755 262 58 4 chr1 170202805 170203302 -72461051 - MER69 DNA AcHobo -1958 568 45 * 358 127 0 0 chr1 170203622 170203685 -72460668 + Alu SINE Alu 240 302 0 12645 38 6 4 chr1 170203839 170205530 -72458823 + L1P LINE L1 2017 3710 -2436 8648 50 10 8 chr1 170205530 170206599 -72457754 - MER11C LTR ERVK 0 1071 1 7536 67 5 3 chr1 170206599 170207597 -72456756 - HERVK11 LTR ERVK 0 7953 6954 * 10670 82 5 1 chr1 170207581 170209053 -72455300 - HERVK11 LTR ERVK -1188 6765 5287 7123 74 2 1 chr1 170209067 170209998 -72454355 - MER11C LTR ERVK -136 935 4 13437 43 0 3 chr1 170209998 170212474 -72451879 + L1PA5 LINE L1 3702 6149 -5 27 49 0 0 chr1 170212484 170212525 -72451828 + AT_rich Low_complexity Low_complexity 1 41 0 1709 103 0 0 chr1 170213024 170213247 -72451106 + AluSq SINE Alu 86 308 -5 1176 181 35 26 chr1 170213514 170213746 -72450607 + AluJo SINE Alu 1 234 -78 230 158 0 0 chr1 170216262 170216300 -72448053 - MLT2F LTR ERVL -7 656 619 186 250 0 0 chr1 170216303 170216359 -72447994 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1303 213 202 9 chr1 170216359 170216850 -72447503 - MLT2F LTR ERVL -58 605 3 261 235 239 0 chr1 170218429 170218548 -72445805 + MIR SINE MIR 31 142 -66 330 345 18 60 chr1 170218658 170218826 -72445527 - MIR SINE MIR -45 163 3 731 193 0 8 chr1 170219105 170219224 -72445129 - FLAM_A SINE Alu -15 118 1 25 31 0 0 chr1 170220047 170220079 -72444274 + AT_rich Low_complexity Low_complexity 1 32 0 366 274 39 99 chr1 170220086 170220674 -72443679 - L1MC5 LINE L1 -70 7891 7339 331 323 32 13 chr1 170220683 170220840 -72443513 + MLT1H1 LTR MaLR 77 249 -341 317 260 68 17 chr1 170220970 170221147 -72443206 - L1MCc LINE L1 -4951 1472 1287 2489 74 0 0 chr1 170222176 170222475 -72441878 - AluY SINE Alu -12 299 1 202 236 109 0 chr1 170222572 170222627 -72441726 + MIR SINE MIR 81 141 -67 382 310 201 39 chr1 170222720 170222962 -72441391 + L2 LINE L2 2809 3010 -262 3262 126 76 2 chr1 170222962 170223478 -72440875 + MER41C LTR ERV1 1 554 0 382 310 201 39 chr1 170223478 170223593 -72440760 + L2 LINE L2 3010 3224 -48 218 424 15 15 chr1 170223667 170223799 -72440554 - L2 LINE L2 0 3272 3141 183 42 0 0 chr1 170224454 170224478 -72439875 + (CAA)n Simple_repeat Simple_repeat 2 25 0 372 281 23 8 chr1 170226241 170226369 -72437984 + LTR67 LTR ERVL 428 557 0 206 321 248 0 chr1 170226681 170226790 -72437563 + MIR SINE MIR 18 153 -109 246 327 20 50 chr1 170226877 170226978 -72437375 - L2 LINE L2 -177 3095 2998 527 253 133 6 chr1 170226998 170227156 -72437197 - MIR SINE MIR 0 262 85 223 303 8 74 chr1 170228103 170228225 -72436128 - MIR SINE MIR -51 211 98 370 343 94 17 chr1 170228652 170228833 -72435520 - MER91A DNA MER1_type -1 195 1 232 288 44 60 chr1 170229343 170229662 -72434691 + L1ME LINE L1 896 1209 -4910 532 321 63 91 chr1 170229672 170230067 -72434286 + HAL1 LINE L1 1328 1711 -796 552 287 119 56 chr1 170230155 170230677 -72433676 + L1ME LINE L1 3181 3735 -2394 635 266 113 36 chr1 170231022 170231563 -72432790 + L1ME LINE L1 3867 4655 -1474 625 300 34 42 chr1 170231578 170232424 -72431929 + L1ME LINE L1 4730 5572 -567 1928 118 42 7 chr1 170232866 170233155 -72431198 + AluSq SINE Alu 1 299 -14 699 45 0 11 chr1 170233765 170233854 -72430499 + L1PA2 LINE L1 6068 6155 0 454 327 20 0 chr1 170234016 170234169 -72430184 + LTR33 LTR ERVL 22 177 -344 548 282 39 15 chr1 170234260 170234466 -72429887 + LTR33 LTR ERVL 307 517 -4 430 249 106 114 chr1 170235400 170235645 -72428708 - L2 LINE L2 -25 3288 3046 497 309 51 64 chr1 170236913 170237288 -72427065 + MLT1I LTR MaLR 40 409 0 1987 144 3 0 chr1 170238232 170238530 -72425823 + AluSx SINE Alu 14 312 0 42984 56 2 1 chr1 170240022 170246166 -72418187 - L1PA4 LINE L1 0 6155 2 1344 264 67 67 chr1 170246168 170246889 -72417464 - L1ME LINE L1 -4613 1467 740 2529 54 0 0 chr1 170246889 170247185 -72417168 + AluY SINE Alu 13 308 -3 1344 264 67 67 chr1 170247185 170247643 -72416710 - L1ME LINE L1 -5340 740 283 21 0 0 0 chr1 170247942 170247963 -72416390 + AT_rich Low_complexity Low_complexity 1 21 0 775 261 56 28 chr1 170247971 170248220 -72416133 + MIR SINE MIR 6 261 -1 595 300 118 63 chr1 170249436 170250361 -72413992 + L2 LINE L2 2323 3271 -1 2604 242 58 20 chr1 170252135 170252887 -72411466 + L1MEc LINE L1 387 1167 -5554 645 230 82 10 chr1 170253006 170253202 -72411151 + L1MEc LINE L1 1768 1977 -4563 288 110 37 46 chr1 170253217 170253326 -72411027 + (TA)n Simple_repeat Simple_repeat 2 109 0 379 205 47 24 chr1 170253332 170253459 -72410894 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 1220 248 52 16 chr1 170253464 170253583 -72410770 + L1MEc LINE L1 2105 2218 -4503 483 100 0 0 chr1 170253583 170253653 -72410700 + (TA)n Simple_repeat Simple_repeat 1 70 0 1220 248 52 16 chr1 170253653 170253896 -72410457 + L1MEc LINE L1 2218 2480 -4241 412 267 38 0 chr1 170253904 170254035 -72410318 + L1MA10 LINE L1 6196 6331 -3 385 308 0 17 chr1 170254155 170254272 -72410081 - MIR3 SINE MIR 0 208 94 490 303 67 10 chr1 170255922 170256117 -72408236 - MIR SINE MIR 0 262 57 1220 62 7 0 chr1 170258359 170258505 -72405848 + L1PA7 LINE L1 5992 6138 -16 276 30 0 0 chr1 170258530 170258563 -72405790 + (A)n Simple_repeat Simple_repeat 1 33 0 338 266 34 126 chr1 170258574 170258781 -72405572 - L2 LINE L2 -57 3215 3028 22 0 0 0 chr1 170259051 170259073 -72405280 + AT_rich Low_complexity Low_complexity 1 22 0 378 247 36 18 chr1 170259158 170259324 -72405029 + L1M4 LINE L1 5177 5345 -801 529 150 0 0 chr1 170259404 170259484 -72404869 + AluS SINE Alu 1 80 -233 1008 35 0 0 chr1 170259648 170259764 -72404589 + L1P LINE L1 2 117 -6029 225 365 102 28 chr1 170260161 170260624 -72403729 + L2 LINE L2 2460 2956 -358 253 286 71 45 chr1 170260784 170260896 -72403457 + L2 LINE L2 3158 3272 0 511 280 114 60 chr1 170261494 170261935 -72402418 + L2 LINE L2 2702 3181 -132 348 289 195 6 chr1 170261948 170262107 -72402246 + MIR SINE MIR 73 261 -1 345 274 328 11 chr1 170262189 170262375 -72401978 - MIR SINE MIR -3 259 15 853 261 92 71 chr1 170263439 170263918 -72400435 + LTR33 LTR ERVL 33 521 0 196 368 116 33 chr1 170264567 170264904 -72399449 + L3 LINE CR1 1165 1529 -48 307 252 94 88 chr1 170265563 170265700 -72398653 - MIR SINE MIR -51 211 71 2836 77 21 21 chr1 170265700 170266075 -72398278 + THE1C LTR MaLR 1 375 0 307 252 94 88 chr1 170266075 170266096 -72398257 - MIR SINE MIR -191 71 52 305 241 224 26 chr1 170266138 170266254 -72398099 - MIR SINE MIR -6 256 118 268 306 104 10 chr1 170266451 170266644 -72397709 + L2 LINE L2 2264 2474 -840 408 281 9 18 chr1 170266866 170266980 -72397373 - L2 LINE L2 -2 3311 3199 371 316 111 0 chr1 170267339 170267456 -72396897 + L2 LINE L2 3121 3250 -22 284 286 12 12 chr1 170267714 170267798 -72396555 + CT-rich Low_complexity Low_complexity 1 84 0 443 157 11 0 chr1 170268723 170268812 -72395541 + (CA)n Simple_repeat Simple_repeat 1 90 0 646 315 76 4 chr1 170269838 170270076 -72394277 + MIR SINE MIR 4 258 -4 209 221 172 62 chr1 170270100 170270203 -72394150 - MIR3 SINE MIR -28 180 55 2428 92 0 0 chr1 170270203 170270506 -72393847 - AluSx SINE Alu -9 303 1 209 221 172 62 chr1 170270506 170270547 -72393806 - MIR3 SINE MIR -153 55 20 253 213 0 0 chr1 170270832 170270879 -72393474 - L2 LINE L2 -7 3265 3219 2074 100 43 0 chr1 170270891 170271171 -72393182 - AluSg SINE Alu -14 296 5 262 323 118 0 chr1 170271191 170271284 -72393069 + L2 LINE L2 3169 3272 0 303 259 35 94 chr1 170272574 170272744 -72391609 - MIR SINE MIR -56 206 47 300 198 111 12 chr1 170272830 170272911 -72391442 - MLT1H LTR MaLR -13 536 448 247 154 0 0 chr1 170273115 170273154 -72391199 - MLT1I LTR MaLR -273 136 98 246 77 0 26 chr1 170273121 170273160 -72391193 - MLT1H LTR MaLR -387 162 125 * 290 283 28 69 chr1 170273367 170273512 -72390841 - MLT1H-int LTR MaLR -201 1170 1032 871 219 138 0 chr1 170273564 170273760 -72390593 - MER58A DNA MER1_type -1 223 1 329 229 28 25 chr1 170274584 170274693 -72389660 - MLT1H-int LTR MaLR -1469 111 1 323 239 168 0 chr1 170274717 170274830 -72389523 - MLT1H LTR MaLR -13 536 405 259 253 152 0 chr1 170274999 170275078 -72389275 - MLT1I LTR MaLR -221 188 98 221 318 108 54 chr1 170275550 170275674 -72388679 - L2 LINE L2 -1 3312 3182 1091 236 8 16 chr1 170275674 170275924 -72388429 + MIR SINE MIR 2 249 -13 602 224 16 8 chr1 170275947 170276072 -72388281 + L2 LINE L2 3188 3313 0 654 299 41 12 chr1 170276137 170276381 -72387972 - MIR SINE MIR -10 252 2 296 260 50 30 chr1 170277302 170277402 -72386951 - MIR SINE MIR 0 262 161 466 259 272 23 chr1 170277403 170277796 -72386557 - L2 LINE L2 -5 3308 2818 445 278 42 35 chr1 170277888 170278032 -72386321 - MIR SINE MIR -110 152 8 711 269 46 28 chr1 170279282 170279564 -72384789 - L1ME3 LINE L1 -206 5956 5670 479 165 43 180 chr1 170279610 170279865 -72384488 + MER112 DNA MER1_type 39 258 -2 285 75 0 0 chr1 170480837 170480877 -72183476 + (CA)n Simple_repeat Simple_repeat 2 41 0 656 292 15 20 chr1 170483427 170483629 -72180724 - MER63A DNA MER1_type -6 204 4 1627 163 0 75 chr1 170484500 170484637 -72179716 + AluSx SINE Alu 1 105 -207 2122 108 0 4 chr1 170484637 170484945 -72179408 + AluSc SINE Alu 1 307 0 1627 163 0 75 chr1 170484945 170485113 -72179240 + AluSx SINE Alu 105 284 -28 531 31 0 0 chr1 170485113 170485178 -72179175 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 333 186 0 0 chr1 170485189 170485259 -72179094 + (TA)n Simple_repeat Simple_repeat 2 71 0 34 0 0 0 chr1 170485329 170485363 -72178990 + AT_rich Low_complexity Low_complexity 1 34 0 285 333 21 35 chr1 170485511 170485652 -72178701 + L2 LINE L2 3171 3309 -4 1021 309 34 50 chr1 170485936 170486516 -72177837 + L2 LINE L2 2554 3123 -190 180 111 0 0 chr1 170486653 170486680 -72177673 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 13261 153 18 13 chr1 170487829 170488087 -72176266 + Tigger1 DNA MER2_type 1 256 -2162 501 118 13 0 chr1 170488087 170488163 -72176190 + MADE1 DNA Mariner 4 80 0 13261 153 18 13 chr1 170488163 170490157 -72174196 + Tigger1 DNA MER2_type 256 2263 -155 1107 186 25 0 chr1 170491196 170491492 -72172861 + L1MC/D LINE L1 5133 5433 -743 2164 182 24 0 chr1 170492445 170492824 -72171529 - MSTD LTR MaLR -8 388 1 811 277 254 25 chr1 170493097 170493843 -72170510 - L2 LINE L2 -2 3311 2399 209 345 155 24 chr1 170494363 170494699 -72169654 + L2 LINE L2 1527 1906 -1408 937 169 51 11 chr1 170494792 170494970 -72169383 + MER74A LTR ERVL 5 189 -369 192 77 0 0 chr1 170494980 170495006 -72169347 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 5795 63 3 16 chr1 170495098 170496486 -72167867 + L1PA7 LINE L1 4634 6146 -8 1582 142 4 0 chr1 170496645 170496878 -72167475 + AluSx SINE Alu 1 234 -78 264 250 0 0 chr1 170496889 170496945 -72167408 + GA-rich Low_complexity Low_complexity 2 57 0 765 119 12 83 chr1 170497261 170497429 -72166924 - L1MB2 LINE L1 -3 6168 6013 2397 200 30 11 chr1 170497538 170498062 -72166291 - L1MB3 LINE L1 -7 6176 5643 257 250 31 0 chr1 170498167 170498231 -72166122 - L1MB3 LINE L1 -611 5569 5504 301 170 0 0 chr1 170498234 170498281 -72166072 - MLT2D LTR ERVL -1 396 350 312 143 0 0 chr1 170498309 170498365 -72165988 + (TA)n Simple_repeat Simple_repeat 1 56 0 258 217 0 0 chr1 170498412 170498481 -72165872 + (TA)n Simple_repeat Simple_repeat 1 69 0 1704 225 36 8 chr1 170498517 170498873 -72165480 - MLT2D LTR ERVL -48 366 1 245 182 22 65 chr1 170498873 170498966 -72165387 - L1P5 LINE L1 -650 5506 5414 1170 180 75 25 chr1 170499378 170499869 -72164484 - L1MB3 LINE L1 -657 5521 4996 334 267 227 13 chr1 170500060 170500210 -72164143 - MIR SINE MIR -25 237 56 395 282 148 7 chr1 170500294 170500436 -72163917 - MER5B DNA MER1_type 0 178 17 20441 31 7 0 chr1 170502831 170506085 -72158268 - L1PA3 LINE L1 -4 6151 2874 540 316 111 58 chr1 170506295 170506808 -72157545 + L2 LINE L2 1933 2472 -842 226 380 57 35 chr1 170507163 170507392 -72156961 + L2 LINE L2 2858 3091 -181 23 0 0 29 chr1 170507559 170507577 -72156776 + AT_rich Low_complexity Low_complexity 1 19 -14 837 10 0 10 chr1 170507577 170507676 -72156677 - L1PA5 LINE L1 -8 6146 6049 23 0 0 29 chr1 170507676 170507691 -72156662 + AT_rich Low_complexity Low_complexity 19 33 0 2101 165 32 27 chr1 170507935 170508111 -72156242 - MER57A LTR ERV1 0 403 229 1735 128 95 4 chr1 170508111 170508384 -72155969 + AluSx SINE Alu 6 303 -9 2101 165 32 27 chr1 170508384 170508608 -72155745 - MER57A LTR ERV1 -174 229 1 219 250 54 0 chr1 170508749 170508805 -72155548 - MER91B DNA MER1_type -112 78 20 209 179 0 0 chr1 170508897 170508936 -72155417 + (CA)n Simple_repeat Simple_repeat 2 40 0 1471 160 78 35 chr1 170509693 170509975 -72154378 + AluJo SINE Alu 1 294 -18 350 296 105 25 chr1 170510190 170510352 -72154001 + MIR SINE MIR 8 182 -80 270 176 0 0 chr1 170510501 170510552 -72153801 + (TG)n Simple_repeat Simple_repeat 2 52 0 372 294 35 0 chr1 170510710 170510853 -72153500 + LTR16A LTR ERVL 303 450 0 266 262 119 16 chr1 170510853 170510979 -72153374 - MIR SINE MIR -95 167 29 23 0 0 0 chr1 170511126 170511149 -72153204 + AT_rich Low_complexity Low_complexity 1 23 0 2451 78 0 0 chr1 170511152 170511461 -72152892 + AluY SINE Alu 1 309 -2 337 228 109 0 chr1 170511477 170511578 -72152775 + LTR50 LTR ERVL 4 115 -680 253 255 149 43 chr1 170511950 170512111 -72152242 + LTR50 LTR ERVL 611 788 -7 424 285 66 69 chr1 170512233 170512507 -72151846 + L1M4 LINE L1 3831 4103 -2043 3722 136 112 65 chr1 170512518 170513307 -72151046 - LTR12 LTR ERV1 0 826 1 603 228 68 50 chr1 170513370 170513651 -72150702 - pTR5 LTR ERV1 -1410 1028 743 1310 158 52 119 chr1 170513651 170514038 -72150315 - MLT1A1 LTR MaLR -4 361 1 242 262 49 67 chr1 170514351 170514396 -72149957 + L1M4 LINE L1 4487 4531 -1615 2013 118 59 34 chr1 170514396 170514751 -72149602 - THE1B LTR MaLR 0 364 1 242 262 49 67 chr1 170514751 170514930 -72149423 + L1M4 LINE L1 4531 4707 -1439 1148 272 41 36 chr1 170515201 170515386 -72148967 + LTR52 LTR ERVL 3 186 -235 2366 79 7 7 chr1 170515386 170515691 -72148662 - AluY SINE Alu -6 305 1 1148 272 41 36 chr1 170515691 170515917 -72148436 + LTR52 LTR ERVL 186 416 -5 1121 187 204 0 chr1 170515943 170516207 -72148146 - AluSx SINE Alu 0 312 1 946 312 57 71 chr1 170516569 170517334 -72147019 - L2 LINE L2 -3 3310 2557 26 0 0 0 chr1 170517454 170517480 -72146873 + AT_rich Low_complexity Low_complexity 1 26 0 6143 93 27 0 chr1 170517574 170518541 -72145812 - L1PA10 LINE L1 -8 6475 5490 19652 154 41 27 chr1 170518541 170523315 -72141038 - L1PA10 LINE L1 -1598 4863 1 267 29 29 0 chr1 170523446 170523481 -72140872 + MADE1 DNA Mariner 45 80 0 189 246 0 98 chr1 170524063 170524124 -72140229 - L2 LINE L2 -19 3294 3240 513 305 72 22 chr1 170527684 170528005 -72136348 - L1ME4a LINE L1 -251 5870 5534 181 369 31 23 chr1 170528483 170528613 -72135740 - L2 LINE L2 -409 2905 2775 22 0 0 0 chr1 170528971 170528993 -72135360 + AT_rich Low_complexity Low_complexity 1 22 0 2923 160 2 6 chr1 170529171 170529658 -72134695 + LOR1a LTR ERV1 1 485 -12 251 237 53 0 chr1 170530605 170530681 -72133672 + MLT1G LTR MaLR 495 574 -16 22 0 0 0 chr1 170530838 170530860 -72133493 + AT_rich Low_complexity Low_complexity 1 22 0 2307 72 3 7 chr1 170531143 170531434 -72132919 - AluY SINE Alu -18 293 4 183 309 64 64 chr1 170533813 170533923 -72130430 + L2 LINE L2 2187 2296 -1018 192 77 0 0 chr1 170533941 170533967 -72130386 + (CATA)n Simple_repeat Simple_repeat 2 27 0 265 325 26 17 chr1 170534261 170534378 -72129975 - L2 LINE L2 -550 2764 2647 915 270 80 52 chr1 170535016 170535874 -72128479 + L1MEc LINE L1 2065 2914 -3301 2371 175 65 37 chr1 170535875 170536366 -72127987 + ERVL-D LTR ERVL 5254 5758 -6 1873 203 8 11 chr1 170536368 170536732 -72127621 + MLT2D LTR ERVL 4 366 -48 232 204 19 0 chr1 170536769 170536823 -72127530 + MLT2D LTR ERVL 461 515 0 676 294 48 7 chr1 170536828 170537117 -72127236 + L1M4 LINE L1 4549 4849 -1297 452 75 0 0 chr1 170537345 170537412 -72126941 - Alu SINE Alu 0 318 252 375 208 28 9 chr1 170537830 170537936 -72126417 - L1MA3 LINE L1 0 6305 6198 413 350 130 50 chr1 170537956 170538473 -72125880 - L2 LINE L2 -571 2743 2186 2047 136 0 16 chr1 170538571 170538881 -72125472 - AluSx SINE Alu -7 305 1 862 236 0 6 chr1 170539320 170539502 -72124851 - AluJb SINE Alu 0 312 132 452 99 4 1 chr1 170540812 170541090 -72123263 - AluSc SINE Alu 0 312 2 324 0 0 0 chr1 170541348 170541384 -72122969 + (CA)n Simple_repeat Simple_repeat 1 36 0 1866 162 0 3 chr1 170542038 170542347 -72122006 + AluJb SINE Alu 1 308 -4 1321 233 102 52 chr1 170542532 170542988 -72121365 + MLT2B1 LTR ERVL 9 492 -28 585 28 0 0 chr1 170542988 170543059 -72121294 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1321 233 102 52 chr1 170543059 170543082 -72121271 + MLT2B1 LTR ERVL 492 512 -8 1020 242 122 41 chr1 170543262 170543656 -72120697 + L1MC4 LINE L1 7460 7821 -221 2499 68 0 0 chr1 170543656 170543965 -72120388 + AluY SINE Alu 1 309 -2 1020 242 122 41 chr1 170543965 170544001 -72120352 + L1MC4 LINE L1 7821 7853 -189 261 0 0 0 chr1 170544001 170544030 -72120323 + (TG)n Simple_repeat Simple_repeat 2 30 0 1020 242 122 41 chr1 170544030 170544131 -72120222 + L1MC4 LINE L1 7853 8035 -7 379 258 10 0 chr1 170544409 170544506 -72119847 - L2 LINE L2 -2 3270 3173 186 343 199 12 chr1 170544680 170544846 -72119507 - L2 LINE L2 -338 2976 2780 379 284 55 125 chr1 170544979 170545380 -72118973 + L2 LINE L2 2900 3272 0 229 309 79 22 chr1 170545456 170545595 -72118758 + L1ME4a LINE L1 5516 5662 -459 357 288 78 52 chr1 170545749 170545940 -72118413 + L1ME4a LINE L1 5925 6120 -1 2174 100 0 0 chr1 170545945 170546226 -72118127 + AluSc SINE Alu 17 297 -12 345 269 126 0 chr1 170546587 170546706 -72117647 + L2 LINE L2 3180 3313 0 184 319 21 0 chr1 170547511 170547558 -72116795 - L3 LINE CR1 -96 1481 1434 * 233 286 143 9 chr1 170547548 170547653 -72116700 + L2 LINE L2 3195 3313 0 353 353 53 0 chr1 170547798 170547968 -72116385 - L1ME4a LINE L1 -258 5863 5685 1735 164 0 17 chr1 170547991 170548306 -72116047 + AluJo SINE Alu 3 312 0 1143 156 84 27 chr1 170548414 170548677 -72115676 - L1MA7 LINE L1 -1 6290 6013 620 343 17 13 chr1 170548726 170548965 -72115388 + MIR SINE MIR 2 241 -21 29 28 0 0 chr1 170549006 170549042 -72115311 + AT_rich Low_complexity Low_complexity 1 36 0 1554 211 48 24 chr1 170549269 170549643 -72114710 - MLT1B LTR MaLR 0 390 8 439 291 6 47 chr1 170549710 170549882 -72114471 - L1ME3A LINE L1 -17 6153 5989 447 272 84 5 chr1 170549892 170550094 -72114259 - L1ME3A LINE L1 -233 5937 5720 430 313 108 8 chr1 170550106 170550365 -72113988 - L1ME3A LINE L1 -503 5661 5377 2792 162 19 45 chr1 170550834 170551009 -72113344 + MLT2B1 LTR ERVL 1 179 -341 1860 125 55 30 chr1 170551009 170551337 -72113016 + MER1B DNA MER1_type 1 336 -1 2792 162 19 45 chr1 170551337 170551693 -72112660 + MLT2B1 LTR ERVL 179 518 -2 22 0 0 0 chr1 170552086 170552108 -72112245 + AT_rich Low_complexity Low_complexity 1 22 0 291 102 41 0 chr1 170552163 170552212 -72112141 + L2 LINE L2 3263 3313 0 187 327 124 18 chr1 170552713 170552826 -72111527 + L2 LINE L2 3180 3304 -9 2496 195 28 13 chr1 170552986 170553520 -72110833 - L1MB2 LINE L1 -175 6232 5691 1955 161 80 0 chr1 170553527 170553863 -72110490 + MER39B LTR ERV1 1 363 -290 665 198 38 13 chr1 170553857 170554014 -72110339 + MER39B LTR ERV1 491 651 -2 * 1249 181 11 12 chr1 170554015 170554226 -72110127 - L1MB2 LINE L1 -730 5686 5475 12829 162 32 8 chr1 170554226 170556587 -72107766 - Tigger1 DNA MER2_type -1 2417 1 1249 181 11 12 chr1 170556587 170556765 -72107588 - L1MB2 LINE L1 -941 5475 5298 6933 175 40 24 chr1 170556779 170558268 -72106085 - L1MB2 LINE L1 -4477 1907 396 2231 151 16 13 chr1 170558268 170558640 -72105713 - THE1C LTR MaLR 0 375 3 2825 122 25 41 chr1 170558644 170559127 -72105226 - THE1C-int LTR MaLR -2 1578 1104 659 228 34 0 chr1 170559127 170559276 -72105077 + MER21A-int LTR ERV1 4038 4191 0 191 136 68 0 chr1 170559308 170559367 -72104986 + (TA)n Simple_repeat Simple_repeat 1 63 0 415 149 15 0 chr1 170559385 170559452 -72104901 + MER21A LTR ERV1 42 109 -822 43089 30 21 1 chr1 170559467 170565495 -72098858 + L1HS LINE L1 4 6155 0 345 102 0 0 chr1 170565499 170565558 -72098795 + (A)n Simple_repeat Simple_repeat 1 59 0 842 238 61 12 chr1 170565560 170565835 -72098518 + MER21A LTR ERV1 122 576 -355 29 60 0 0 chr1 170567037 170567087 -72097266 + AT_rich Low_complexity Low_complexity 1 50 0 278 221 39 0 chr1 170567217 170567294 -72097059 - MER103 DNA DNA -77 89 10 842 311 81 50 chr1 170568095 170568697 -72095656 + HAL1 LINE L1 808 1428 -1079 407 333 38 0 chr1 170568871 170569084 -72095269 + HAL1 LINE L1 1472 1692 -815 12725 178 15 31 chr1 170569463 170569879 -72094474 + L1MA3 LINE L1 2496 2917 -3388 1920 123 11 0 chr1 170569879 170570180 -72094173 + AluSg SINE Alu 1 304 0 12725 178 15 31 chr1 170570180 170570482 -72093871 + L1MA3 LINE L1 2917 3222 -3083 1949 145 0 7 chr1 170570482 170570778 -72093575 - AluSx SINE Alu -18 294 1 12725 178 15 31 chr1 170570778 170573936 -72090417 + L1MA3 LINE L1 3222 6305 0 1945 124 10 23 chr1 170574050 170574356 -72089997 + AluSx SINE Alu 1 302 -10 230 178 0 0 chr1 170574501 170574546 -72089807 + L1 LINE L1 5150 5194 -952 338 305 64 43 chr1 170574578 170574719 -72089634 + HAL1b LINE L1 768 911 -437 34 19 0 19 chr1 170574959 170574979 -72089374 + AT_rich Low_complexity Low_complexity 1 20 -31 1602 163 7 68 chr1 170574979 170575286 -72089067 + AluSx SINE Alu 1 288 -24 34 19 0 19 chr1 170575286 170575317 -72089036 + AT_rich Low_complexity Low_complexity 20 51 0 232 316 107 20 chr1 170575504 170575757 -72088596 - L1MC/D LINE L1 -1900 5908 5634 540 305 16 26 chr1 170575882 170576072 -72088281 - MER5A DNA MER1_type 0 189 2 689 297 91 13 chr1 170576102 170576553 -72087800 - L1MEc LINE L1 -4328 2068 1583 2564 128 0 3 chr1 170576818 170577194 -72087159 - THE1C LTR MaLR 0 375 1 1522 98 61 61 chr1 170577467 170578584 -72085769 + SVA Other Other 444 739 -647 6202 98 38 21 chr1 170578595 170579516 -72084837 + SVA Other Other 433 1369 -17 230 0 33 0 chr1 170579521 170579551 -72084802 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 621 274 113 17 chr1 170579756 170580143 -72084210 + LTR16A LTR ERVL 1 450 0 22 35 0 0 chr1 170581724 170581753 -72082600 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1 170582126 170582147 -72082206 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1253 188 8 4 chr1 170582158 170582392 -72081961 - AluJo SINE Alu -77 235 1 264 176 0 0 chr1 170582596 170582647 -72081706 - AluSx SINE Alu -2 298 248 * 1293 137 0 27 chr1 170582624 170582833 -72081520 - AluSx SINE Alu -121 191 1 245 270 113 52 chr1 170582977 170583092 -72081261 - L2 LINE L2 -4 3309 3188 2316 81 3 0 chr1 170583092 170583376 -72080977 - AluSc SINE Alu -22 287 3 345 332 67 41 chr1 170584323 170584591 -72079762 + MLT1J LTR MaLR 71 345 -166 21 0 0 0 chr1 170584994 170585015 -72079338 + AT_rich Low_complexity Low_complexity 1 21 0 531 165 134 0 chr1 170585015 170585112 -72079241 - AluJb SINE Alu -27 285 176 709 257 34 24 chr1 170585979 170586185 -72078168 - MER3 DNA MER1_type 0 209 2 183 42 0 0 chr1 170586436 170586460 -72077893 + (GA)n Simple_repeat Simple_repeat 1 24 0 339 235 54 81 chr1 170586548 170586697 -72077656 + MER110-int LTR ERV1 2785 2929 -1718 1244 208 39 56 chr1 170586715 170587110 -72077243 + MER67C LTR ERV1 1 410 -236 3230 142 58 38 chr1 170587800 170588400 -72075953 - LTR9 LTR ERV1 0 612 1 1876 140 3 7 chr1 170588766 170589052 -72075301 + AluJo SINE Alu 1 285 -27 195 204 0 0 chr1 170589405 170589454 -72074899 + A-rich Low_complexity Low_complexity 1 49 0 909 294 127 41 chr1 170589472 170589962 -72074391 + MER90 LTR ERV1 69 600 -14 380 303 18 0 chr1 170589992 170590101 -72074252 - MIR SINE MIR -134 128 18 395 221 206 20 chr1 170592147 170592351 -72072002 - MER67D LTR ERV1 -4 510 269 * 879 193 23 6 chr1 170592318 170592494 -72071859 - MER67C LTR ERV1 -307 403 225 1176 225 40 24 chr1 170592607 170592987 -72071366 + LTR10B LTR ERV1 120 547 0 961 239 15 15 chr1 170592987 170593247 -72071106 + HERVI LTR ERV1 2 261 -7524 372 194 21 32 chr1 170593293 170593386 -72070967 + HERVI LTR ERV1 225 316 -6333 * 2279 218 14 22 chr1 170593383 170593892 -72070461 + HERVI LTR ERV1 511 1015 -6770 7674 27 0 0 chr1 170594941 170596138 -72068215 + L1PA3 LINE L1 5104 6300 0 378 276 179 8 chr1 170596285 170596419 -72067934 + MIR3 SINE MIR 13 169 -39 21 0 0 0 chr1 170596496 170596517 -72067836 + AT_rich Low_complexity Low_complexity 1 21 0 383 306 14 0 chr1 170596842 170596989 -72067364 + GA-rich Low_complexity Low_complexity 2 150 0 334 278 11 34 chr1 170597030 170597206 -72067147 + GA-rich Low_complexity Low_complexity 1 172 0 10474 245 41 27 chr1 170597394 170597487 -72066866 + HERVI LTR ERV1 4844 4934 -2851 189 0 0 0 chr1 170597487 170597508 -72066845 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1854 116 95 3 chr1 170597508 170597793 -72066560 + AluY SINE Alu 1 311 0 10474 245 41 27 chr1 170597793 170600598 -72063755 + HERVI LTR ERV1 4933 7784 -1 1038 267 46 29 chr1 170600601 170601099 -72063254 + LTR10B LTR ERV1 1 547 0 722 196 0 0 chr1 170601114 170601247 -72063106 + FRAM SINE Alu 18 150 -26 219 103 0 0 chr1 170601247 170601286 -72063067 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 724 176 57 105 chr1 170601308 170601518 -72062835 - MER67D LTR ERV1 -312 202 3 331 360 46 11 chr1 170602928 170603103 -72061250 + MIR SINE MIR 53 233 -29 310 279 107 0 chr1 170603331 170603453 -72060900 + MIR SINE MIR 107 241 -21 1600 147 88 16 chr1 170603498 170603818 -72060535 + MER61A LTR ERV1 1 343 0 3182 187 59 16 chr1 170603818 170604496 -72059857 + MER61A-int LTR ERV1 1 707 -4510 325 47 0 0 chr1 170604525 170604568 -72059785 + MER61A-int LTR ERV1 1320 1362 -3855 * 5479 92 40 16 chr1 170604565 170606005 -72058348 + MER61-int LTR ERV1 1655 2987 -2230 1879 226 32 3 chr1 170606310 170606682 -72057671 - MSTD LTR MaLR 0 396 14 725 169 0 0 chr1 170607624 170607742 -72056611 - FLAM_C SINE Alu -25 118 1 411 299 73 0 chr1 170608538 170608675 -72055678 - L2 LINE L2 0 3313 3167 687 232 53 106 chr1 170609407 170609517 -72054836 + MER45C DNA AcHobo 1 115 -838 2159 80 0 21 chr1 170609517 170609850 -72054503 - AluY SINE Alu 0 327 1 687 232 53 106 chr1 170609850 170609984 -72054369 + MER45C DNA AcHobo 115 233 -720 415 245 141 51 chr1 170609965 170610287 -72054066 + MER45C DNA AcHobo 600 943 -10 * 182 269 179 0 chr1 170611945 170612012 -72052341 - L2 LINE L2 -27 3245 3167 256 293 24 24 chr1 170612400 170612482 -72051871 - L2 LINE L2 -1 3312 3231 23 68 0 0 chr1 170612912 170612956 -72051397 + AT_rich Low_complexity Low_complexity 1 44 0 1927 131 7 10 chr1 170613322 170613613 -72050740 + AluSx SINE Alu 1 290 -22 601 316 72 61 chr1 170614175 170614650 -72049703 + MLT1J LTR MaLR 1 480 -31 216 0 0 0 chr1 170614731 170614755 -72049598 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr1 170615275 170615303 -72049050 + AT_rich Low_complexity Low_complexity 1 28 0 225 307 98 13 chr1 170615653 170615806 -72048547 + MIR SINE MIR 72 237 -25 1250 170 9 18 chr1 170616586 170616809 -72047544 - AluJb SINE Alu -15 297 77 21 0 0 0 chr1 170617124 170617145 -72047208 + AT_rich Low_complexity Low_complexity 1 21 0 380 305 138 6 chr1 170617251 170617418 -72046935 - MIR SINE MIR 0 262 74 2001 141 0 0 chr1 170618044 170618351 -72046002 - AluSx SINE Alu 0 307 1 25 0 0 0 chr1 170618770 170618795 -72045558 + AT_rich Low_complexity Low_complexity 1 25 0 390 234 32 0 chr1 170619320 170619414 -72044939 + L1MC5 LINE L1 6693 6789 -1172 244 242 60 30 chr1 170619418 170619575 -72044778 + L1MD3 LINE L1 6900 7090 -952 1620 149 75 35 chr1 170619691 170619973 -72044380 - AluJb SINE Alu -19 293 1 797 104 0 0 chr1 170621742 170621848 -72042505 - MSTA LTR MaLR -322 106 1 399 305 16 8 chr1 170622359 170622487 -72041866 + L2 LINE L2 3185 3313 0 521 327 61 46 chr1 170622695 170623159 -72041194 - L3 LINE CR1 -104 1473 943 1302 91 156 0 chr1 170623159 170623358 -72040995 + MER30 DNA MER1_type 1 230 0 521 327 61 46 chr1 170623358 170623397 -72040956 - L3 LINE CR1 -634 943 906 21 0 0 0 chr1 170624512 170624533 -72039820 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 170626261 170626300 -72038053 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr1 170627232 170627263 -72037090 + AT_rich Low_complexity Low_complexity 1 31 0 643 114 35 0 chr1 170627433 170627547 -72036806 + CT-rich Low_complexity Low_complexity 1 118 0 1042 173 62 24 chr1 170627547 170627755 -72036598 - AluJo SINE Alu -13 299 84 242 294 129 68 chr1 170627978 170628100 -72036253 + L1ME3A LINE L1 5470 5583 -587 1175 201 0 31 chr1 170628100 170628324 -72036029 - MER20 DNA MER1_type -2 217 1 242 294 129 68 chr1 170628324 170628661 -72035692 + L1ME3A LINE L1 5583 5959 -211 333 0 0 0 chr1 170628661 170628698 -72035655 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 79 86 0 0 chr1 170628926 170629124 -72035229 + AT_rich Low_complexity Low_complexity 1 198 0 1596 186 9 59 chr1 170629347 170629685 -72034668 - MLT1B LTR MaLR 0 390 70 229 151 38 0 chr1 170630321 170630374 -72033979 + GA-rich Low_complexity Low_complexity 2 56 0 451 287 63 51 chr1 170630520 170630774 -72033579 + HAL1 LINE L1 906 1162 -1345 24 53 0 0 chr1 170631038 170631076 -72033277 + AT_rich Low_complexity Low_complexity 1 38 0 2130 96 31 0 chr1 170631125 170631416 -72032937 + AluSp SINE Alu 2 301 -12 2000 169 40 34 chr1 170631675 170632223 -72032130 - MLT2A2 LTR ERVL 0 554 1 429 290 53 18 chr1 170633098 170633267 -72031086 + MER5B DNA MER1_type 1 175 -3 352 253 26 98 chr1 170634518 170634712 -72029641 - L2 LINE L2 0 3313 3134 208 345 131 38 chr1 170634881 170635148 -72029205 - L2 LINE L2 -436 2878 2587 987 246 63 76 chr1 170635629 170636127 -72028226 - MLT2D LTR ERVL 0 520 2 183 80 0 0 chr1 170636149 170636174 -72028179 + (CA)n Simple_repeat Simple_repeat 2 26 0 943 228 15 92 chr1 170636834 170637237 -72027116 + MLT1A2 LTR MaLR 3 374 0 27 0 0 0 chr1 170637366 170637393 -72026960 + AT_rich Low_complexity Low_complexity 1 27 0 388 324 21 7 chr1 170637543 170637688 -72026665 + L2 LINE L2 2339 2485 -829 * 482 262 126 42 chr1 170637682 170637945 -72026408 + L2 LINE L2 3026 3310 -3 1952 142 0 0 chr1 170638377 170638682 -72025671 + AluSg SINE Alu 1 305 0 542 248 46 37 chr1 170638686 170638904 -72025449 - L1ME1 LINE L1 -18 6217 5998 * 3606 267 87 26 chr1 170638893 170640270 -72024083 - L1ME1 LINE L1 -894 5321 3821 249 33 0 0 chr1 170640270 170640300 -72024053 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 3606 267 87 26 chr1 170640300 170640600 -72023753 - L1ME1 LINE L1 -2394 3821 3541 1733 168 13 25 chr1 170640646 170640962 -72023391 + AluJb SINE Alu 1 312 0 2106 291 55 61 chr1 170641101 170642566 -72021787 - L1ME1 LINE L1 -3010 3205 1810 793 192 28 22 chr1 170642566 170642748 -72021605 - L1MC1 LINE L1 0 6333 6151 2106 291 55 61 chr1 170642748 170643115 -72021238 - L1ME1 LINE L1 -4405 1810 1442 902 259 5 0 chr1 170643123 170643324 -72021029 - L2 LINE L2 -527 2787 2586 799 241 42 101 chr1 170643341 170643698 -72020655 + MLT2C1 LTR ERVL 13 348 -49 252 77 0 0 chr1 170643745 170643784 -72020569 + (CA)n Simple_repeat Simple_repeat 2 40 0 230 191 0 0 chr1 170643787 170643829 -72020524 + MLT2C1 LTR ERVL 356 397 0 22 35 0 0 chr1 170644255 170644284 -72020069 + AT_rich Low_complexity Low_complexity 1 29 0 490 355 26 0 chr1 170645364 170645415 -72018938 + MIR SINE MIR 57 105 -157 360 0 0 0 chr1 170645415 170645455 -72018898 + (TG)n Simple_repeat Simple_repeat 2 41 0 490 355 26 0 chr1 170645455 170645592 -72018761 + MIR SINE MIR 105 250 -12 225 273 0 0 chr1 170645805 170645860 -72018493 + MIR SINE MIR 52 106 -102 199 229 21 0 chr1 170646008 170646056 -72018297 - L2 LINE L2 0 3272 3224 1431 259 74 24 chr1 170646167 170647054 -72017299 - L1ME2 LINE L1 -327 5837 4906 1384 254 141 24 chr1 170647048 170647898 -72016455 - L1ME2 LINE L1 -3044 3102 2153 * 374 229 152 102 chr1 170650495 170650810 -72013543 - MLT1I LTR MaLR -8 401 71 23 54 0 0 chr1 170651018 170651055 -72013298 + AT_rich Low_complexity Low_complexity 1 37 0 1481 238 68 29 chr1 170651323 170651807 -72012546 - MLT1D LTR MaLR 0 505 3 1519 280 19 17 chr1 170652921 170653463 -72010890 - L1MC1 LINE L1 -794 5352 4810 5286 163 21 2 chr1 170653463 170653779 -72010574 + L1MC1 LINE L1 5358 5667 -666 180 0 0 0 chr1 170653779 170653799 -72010554 + (CA)n Simple_repeat Simple_repeat 2 21 0 5286 163 21 2 chr1 170653799 170654384 -72009969 + L1MC1 LINE L1 5667 6276 -57 273 57 0 0 chr1 170655602 170655637 -72008716 + (CA)n Simple_repeat Simple_repeat 2 36 0 489 322 34 19 chr1 170655807 170656015 -72008338 + MIR SINE MIR 9 219 -43 21 0 0 0 chr1 170657420 170657441 -72006912 + AT_rich Low_complexity Low_complexity 1 21 0 201 344 0 0 chr1 170657538 170657602 -72006751 - L2 LINE L2 0 3272 3209 180 0 0 0 chr1 170658494 170658514 -72005839 + (TA)n Simple_repeat Simple_repeat 1 20 0 293 278 41 0 chr1 170659187 170659284 -72005069 + MIR3 SINE MIR 76 176 -32 1345 213 89 7 chr1 170659952 170660279 -72004074 + MLT1A1 LTR MaLR 1 364 -1 197 148 49 0 chr1 170660347 170660428 -72003925 + (TAG)n Simple_repeat Simple_repeat 2 86 0 314 248 34 60 chr1 170660977 170661094 -72003259 - MIR SINE MIR -56 206 93 280 297 88 11 chr1 170662072 170662163 -72002190 - MIR3 SINE MIR -9 199 102 217 368 38 19 chr1 170662527 170662633 -72001720 - L2 LINE L2 -44 3228 3121 217 369 123 24 chr1 170662832 170663287 -72001066 - L2 LINE L2 -385 2929 2430 1351 191 30 27 chr1 170663802 170664101 -72000252 + MER33 DNA MER1_type 22 321 -3 2100 95 0 0 chr1 170664214 170664488 -71999865 - AluSx SINE Alu -14 298 25 21 36 0 0 chr1 170665462 170665490 -71998863 + AT_rich Low_complexity Low_complexity 1 28 0 4301 116 54 62 chr1 170666014 170667431 -71996922 + pTR5 LTR ERV1 743 2438 0 505 240 140 12 chr1 170667675 170667846 -71996507 - MIR3 SINE MIR -13 195 3 21 0 0 0 chr1 170671020 170671041 -71993312 + AT_rich Low_complexity Low_complexity 1 21 0 1975 127 0 3 chr1 170671071 170671387 -71992966 - AluSq SINE Alu 0 317 3 348 161 0 0 chr1 170721769 170721831 -71942522 + (TA)n Simple_repeat Simple_repeat 1 62 0 2418 81 0 3 chr1 170721831 170722138 -71942215 - AluY SINE Alu -5 306 1 22 56 0 0 chr1 170723792 170723828 -71940525 + AT_rich Low_complexity Low_complexity 1 36 0 212 308 60 43 chr1 170724074 170724191 -71940162 - MIR SINE MIR -135 127 9 693 218 84 9 chr1 170724521 170724737 -71939616 + MER110A LTR ERV1 267 480 0 28 48 0 0 chr1 170726271 170726313 -71938040 + AT_rich Low_complexity Low_complexity 1 42 0 1779 155 52 30 chr1 170728712 170729079 -71935274 + THE1C LTR MaLR 1 375 0 1750 260 21 21 chr1 170729081 170729601 -71934752 - L1ME1 LINE L1 -99 6067 5548 551 308 149 2 chr1 170729615 170729959 -71934394 - L1ME1 LINE L1 -1776 4370 3981 4209 184 55 48 chr1 170729961 170730482 -71933871 - L1MC2 LINE L1 -7 6337 5804 2479 68 0 0 chr1 170730482 170730790 -71933563 - AluY SINE Alu -1 310 3 4209 184 55 48 chr1 170730790 170731276 -71933077 - L1MC2 LINE L1 -540 5804 5323 1166 197 118 15 chr1 170731282 170731622 -71932731 - L1MC2 LINE L1 -912 5234 4860 376 202 24 0 chr1 170731622 170731706 -71932647 + AluJo SINE Alu 49 134 -168 23 0 0 0 chr1 170731947 170731970 -71932383 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr1 170732179 170732216 -71932137 + AT_rich Low_complexity Low_complexity 1 37 0 1086 231 7 11 chr1 170732250 170732527 -71931826 - L1MD3 LINE L1 -1 7994 7719 630 45 0 23 chr1 170732547 170732635 -71931718 - L1PA11 LINE L1 -3 6171 6086 1512 139 31 0 chr1 170732635 170732893 -71931460 - L1P LINE L1 -775 5371 5106 21 36 0 0 chr1 170732897 170732925 -71931428 + AT_rich Low_complexity Low_complexity 1 28 0 437 270 96 4 chr1 170732932 170733162 -71931191 - L1M4 LINE L1 -1013 5133 4883 21 0 0 0 chr1 170733310 170733331 -71931022 + AT_rich Low_complexity Low_complexity 1 21 0 652 267 43 61 chr1 170733482 170733759 -71930594 - LTR16A LTR ERVL 0 450 179 1287 214 95 12 chr1 170733778 170734115 -71930238 - MLT1A1 LTR MaLR 0 365 1 183 42 0 0 chr1 170734343 170734367 -71929986 + (TTTTTA)n Simple_repeat Simple_repeat 6 29 0 261 0 0 0 chr1 170734733 170734762 -71929591 + (TG)n Simple_repeat Simple_repeat 2 30 0 651 305 84 25 chr1 170735000 170735239 -71929114 + MIR SINE MIR 10 262 0 359 40 0 20 chr1 170735989 170736039 -71928314 + (TG)n Simple_repeat Simple_repeat 2 50 0 1710 203 79 83 chr1 170737283 170737701 -71926652 - MLT1D LTR MaLR 0 505 88 2260 179 42 83 chr1 170737701 170738337 -71926016 - LTR38B LTR ERV1 0 610 1 1710 203 79 83 chr1 170738337 170738425 -71925928 - MLT1D LTR MaLR -417 88 1 440 221 12 0 chr1 170738601 170738687 -71925666 + MER21B LTR ERV1 1 87 -776 2193 268 88 29 chr1 170738718 170739046 -71925307 + MER21B LTR ERV1 19 326 -537 2590 121 3 0 chr1 170739046 170739409 -71924944 - THE1B LTR MaLR 0 364 1 2193 268 88 29 chr1 170739409 170739829 -71924524 + MER21B LTR ERV1 326 811 -52 253 182 18 0 chr1 170741190 170741245 -71923108 - HSMAR1 DNA Mariner 0 1287 1232 22 56 0 0 chr1 170741538 170741574 -71922779 + AT_rich Low_complexity Low_complexity 1 36 0 203 238 0 0 chr1 170741577 170741619 -71922734 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 30 77 0 0 chr1 170742957 170743022 -71921331 + AT_rich Low_complexity Low_complexity 1 65 0 1901 117 55 78 chr1 170743580 170743964 -71920389 + THE1C LTR MaLR 1 375 0 21 82 0 0 chr1 170743991 170744040 -71920313 + AT_rich Low_complexity Low_complexity 1 49 0 1543 153 0 0 chr1 170744362 170744591 -71919762 - AluSg/x SINE Alu -11 301 73 188 132 0 26 chr1 170744601 170744639 -71919714 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 376 302 0 0 chr1 170745073 170745159 -71919194 - L2 LINE L2 -1 3312 3227 585 312 19 0 chr1 170745580 170745737 -71918616 + L2 LINE L2 2376 2535 -779 786 284 40 9 chr1 170745740 170745965 -71918388 - MIR SINE MIR -21 241 10 2020 186 85 52 chr1 170745969 170746464 -71917889 + MER67D LTR ERV1 1 511 -3 553 244 122 49 chr1 170746476 170746523 -71917830 + L2 LINE L2 2519 2561 -753 3205 173 25 5 chr1 170746523 170747129 -71917224 - LTR29 LTR ERV1 -2 620 3 553 244 122 49 chr1 170747129 170747286 -71917067 + L2 LINE L2 2561 2738 -576 356 286 87 10 chr1 170747290 170747479 -71916874 + MLT1H LTR MaLR 1 171 -238 249 246 9 109 chr1 170747618 170747728 -71916625 + MLT1H LTR MaLR 431 529 -20 721 335 123 16 chr1 170747756 170748269 -71916084 + L2 LINE L2 2737 3306 -7 1231 148 26 100 chr1 170748293 170748564 -71915789 - MER46B DNA MER2_type -110 126 1 232 302 114 20 chr1 170748566 170748715 -71915638 - MIR SINE MIR -49 213 51 1779 218 41 82 chr1 170748715 170749353 -71915000 - LTR9 LTR ERV1 0 612 1 432 0 0 0 chr1 170749375 170749423 -71914930 + (TG)n Simple_repeat Simple_repeat 2 49 0 33 43 0 0 chr1 170753289 170753336 -71911017 + AT_rich Low_complexity Low_complexity 1 47 0 2213 197 29 2 chr1 170753860 170754281 -71910072 - MSTB1 LTR MaLR 0 432 1 1107 140 21 47 chr1 170754447 170754683 -71909670 - L1MA9 LINE L1 0 6312 6083 482 84 14 0 chr1 170754683 170754754 -71909599 - MER61E LTR ERV1 -414 155 84 631 214 84 0 chr1 170754758 170754912 -71909441 - L1MA9 LINE L1 -233 6079 5913 985 288 58 60 chr1 170755684 170756289 -71908064 + HAL1 LINE L1 1 604 -1903 747 167 8 16 chr1 170756332 170756457 -71907896 - MER4A LTR ERV1 0 664 541 2921 154 13 42 chr1 170756457 170757002 -71907351 + MER61E LTR ERV1 1 529 -40 946 133 245 108 chr1 170757010 170757259 -71907094 - MER4A LTR ERV1 -121 543 261 617 141 0 10 chr1 170757259 170757358 -71906995 - MER4A LTR ERV1 -566 98 1 1140 297 40 26 chr1 170757359 170758469 -71905884 + HAL1 LINE L1 633 1858 -649 548 274 115 83 chr1 170758555 170759244 -71905109 + HAL1 LINE L1 1690 2400 -107 457 338 0 0 chr1 170759304 170759446 -71904907 - MER63A DNA MER1_type -5 205 64 246 62 0 0 chr1 170759493 170759525 -71904828 + (CTA)n Simple_repeat Simple_repeat 2 33 0 32 0 0 0 chr1 170759589 170759621 -71904732 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr1 170761424 170761451 -71902902 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2005 122 4 0 chr1 170761453 170761732 -71902621 - AluSx SINE Alu -32 280 1 268 343 82 43 chr1 170762382 170762589 -71901764 + MIR SINE MIR 21 235 -27 1789 175 11 0 chr1 170762891 170763177 -71901176 - AluJb SINE Alu -23 289 1 550 226 77 30 chr1 170763352 170763520 -71900833 + MLT1D LTR MaLR 1 176 -329 198 0 0 0 chr1 170763520 170763542 -71900811 + (TTA)n Simple_repeat Simple_repeat 3 24 0 18517 83 7 0 chr1 170763542 170766876 -71897477 - L1PA7 LINE L1 -18 6451 3098 10901 127 10 1 chr1 170766889 170768494 -71895859 - L1PA7 LINE L1 -4841 1620 1 1407 166 112 14 chr1 170768522 170768817 -71895536 + MLT1D LTR MaLR 182 505 0 344 279 87 62 chr1 170768818 170769026 -71895327 - MIR SINE MIR -38 224 12 202 104 21 21 chr1 170769331 170769379 -71894974 + (TC)n Simple_repeat Simple_repeat 1 48 0 1944 125 3 36 chr1 170769829 170770133 -71894220 - AluSx SINE Alu -18 294 1 207 125 0 0 chr1 170770755 170770795 -71893558 + (CA)n Simple_repeat Simple_repeat 1 40 0 26 30 0 0 chr1 170772014 170772047 -71892306 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr1 170772347 170772373 -71891980 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr1 170772527 170772563 -71891790 + AT_rich Low_complexity Low_complexity 1 36 0 219 114 0 0 chr1 170772770 170772805 -71891548 + (TG)n Simple_repeat Simple_repeat 2 36 0 2148 116 0 7 chr1 170772893 170773187 -71891166 + AluSx SINE Alu 1 292 -20 233 282 87 114 chr1 170773758 170773907 -71890446 + MER5A DNA MER1_type 7 151 -38 1618 151 0 4 chr1 170775982 170776221 -71888132 + AluJo SINE Alu 37 274 -38 2698 132 12 2 chr1 170776221 170776645 -71887708 + MSTA LTR MaLR 1 428 0 197 83 28 0 chr1 170777464 170777500 -71886853 + (CA)n Simple_repeat Simple_repeat 2 38 0 207 302 0 48 chr1 170777574 170777637 -71886716 - L2 LINE L2 -27 3245 3186 359 282 78 10 chr1 170777922 170778025 -71886328 - L2 LINE L2 -1 3271 3162 505 299 12 36 chr1 170778569 170778736 -71885617 - MLT1-int LTR MaLR -294 1077 915 893 168 67 0 chr1 170778768 170778947 -71885406 - MLT1B LTR MaLR -199 191 1 1987 90 86 0 chr1 170779497 170779776 -71884577 + AluY SINE Alu 1 303 -8 33 0 0 0 chr1 170781491 170781524 -71882829 + AT_rich Low_complexity Low_complexity 1 33 0 340 71 0 0 chr1 170781572 170781614 -71882739 - FLAM SINE Alu -11 122 81 304 159 0 0 chr1 170781608 170781652 -71882701 - Alu SINE Alu -253 48 5 * 235 294 141 11 chr1 170782029 170782121 -71882232 - L2 LINE L2 -993 2321 2218 379 333 160 0 chr1 170782164 170782320 -71882033 + MER5A DNA MER1_type 9 189 0 1962 164 0 0 chr1 170783187 170783485 -71880868 - AluJb SINE Alu -14 298 1 2091 117 0 7 chr1 170784184 170784482 -71879871 + AluSc SINE Alu 1 296 -13 207 0 0 0 chr1 170785705 170785728 -71878625 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chr1 170786317 170786338 -71878015 + (TA)n Simple_repeat Simple_repeat 2 22 0 887 294 138 26 chr1 170786990 170787710 -71876643 - L2 LINE L2 -38 3275 2472 742 200 90 0 chr1 170788394 170788539 -71875814 + FAM SINE Alu 6 163 -22 216 0 0 0 chr1 170788542 170788566 -71875787 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 508 260 42 72 chr1 170788777 170789042 -71875311 - HAL1 LINE L1 0 2507 2251 1464 209 68 47 chr1 170789425 170789863 -71874490 + MER66A LTR ERV1 97 478 0 303 338 110 7 chr1 170789896 170790050 -71874303 + HAL1 LINE L1 1429 1598 -909 1240 186 78 110 chr1 170790058 170790527 -71873826 - MER66A LTR ERV1 0 478 98 1124 260 44 22 chr1 170790580 170791034 -71873319 - HAL1 LINE L1 -1134 1373 910 186 103 0 0 chr1 170791055 170791084 -71873269 + (TA)n Simple_repeat Simple_repeat 1 29 0 2451 43 7 7 chr1 170791158 170791462 -71872891 - AluY SINE Alu -6 305 2 332 325 64 21 chr1 170791572 170791760 -71872593 - HAL1 LINE L1 -2141 366 171 873 118 8 8 chr1 170791776 170791903 -71872450 - AluSc SINE Alu -33 276 150 314 250 0 50 chr1 170793275 170793355 -71870998 + MER115 DNA AcHobo 614 689 -4 317 333 23 23 chr1 170794234 170794363 -71869990 + MIR SINE MIR 95 223 -39 875 143 0 0 chr1 170794388 170794521 -71869832 + FLAM_C SINE Alu 1 133 0 1217 233 98 25 chr1 170794869 170795195 -71869158 + MLT1A1 LTR MaLR 16 365 0 2137 123 0 3 chr1 170795269 170795571 -71868782 + AluSp SINE Alu 1 301 -12 466 117 11 11 chr1 170795572 170795666 -71868687 + (TA)n Simple_repeat Simple_repeat 1 94 0 225 132 0 0 chr1 170795745 170795783 -71868570 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 2186 67 3 3 chr1 170796093 170796378 -71867975 + AluY SINE Alu 27 311 0 2178 119 0 16 chr1 170796437 170796755 -71867598 + AluSq SINE Alu 1 313 0 33 25 0 0 chr1 170797464 170797504 -71866849 + AT_rich Low_complexity Low_complexity 1 40 0 1382 227 39 24 chr1 170797817 170798148 -71866205 - MER2 DNA MER2_type -7 338 3 850 289 31 27 chr1 170798556 170799037 -71865316 + L1ME3A LINE L1 3497 3979 -2167 445 286 84 10 chr1 170799063 170799266 -71865087 + L1ME3A LINE L1 4028 4245 -1901 317 66 0 98 chr1 170799297 170799358 -71864995 - MLT2A1 LTR ERVL 0 444 390 2715 73 68 8 chr1 170799394 170799775 -71864578 - MLT2A1 LTR ERVL -40 404 1 304 246 0 0 chr1 170799772 170799837 -71864516 + Tigger5 DNA MER2_type 4 68 -2255 * 226 205 0 0 chr1 170799857 170799896 -71864457 - Tigger5 DNA MER2_type -23 2300 2262 * 356 194 0 0 chr1 170799892 170799954 -71864399 + Tigger5 DNA MER2_type 2262 2323 0 219 69 0 0 chr1 170799957 170799986 -71864367 + (CA)n Simple_repeat Simple_repeat 2 30 0 1322 213 123 14 chr1 170799996 170800185 -71864168 + MSTD LTR MaLR 1 168 -228 1872 143 0 42 chr1 170800185 170800493 -71863860 + AluSx SINE Alu 1 295 -17 1322 213 123 14 chr1 170800493 170800660 -71863693 + MSTD LTR MaLR 168 396 0 455 296 142 32 chr1 170800680 170801312 -71863041 + L1ME3A LINE L1 4326 5027 -1119 1543 229 9 9 chr1 170801328 170801668 -71862685 + MER58B DNA MER1_type 2 341 0 677 279 85 30 chr1 170801670 170802638 -71861715 + L1ME3A LINE L1 5038 6073 -97 1767 155 52 30 chr1 170804465 170804832 -71859521 + THE1C LTR MaLR 1 375 0 2754 255 82 52 chr1 170804834 170806173 -71858180 - L1ME1 LINE L1 -99 6067 4652 3015 104 13 7 chr1 170806173 170806624 -71857729 - L1PA13 LINE L1 -5 6158 5705 2754 255 82 52 chr1 170806624 170807317 -71857036 - L1ME1 LINE L1 -1514 4652 3981 4243 184 55 48 chr1 170807319 170807840 -71856513 - L1MC2 LINE L1 -7 6337 5804 2479 68 0 0 chr1 170807840 170808148 -71856205 - AluY SINE Alu -1 310 3 4243 184 55 48 chr1 170808148 170808634 -71855719 - L1MC2 LINE L1 -540 5804 5323 1188 198 118 12 chr1 170808640 170808979 -71855374 - L1MC2 LINE L1 -912 5234 4860 376 202 24 0 chr1 170808979 170809063 -71855290 + AluJo SINE Alu 49 134 -168 23 0 0 0 chr1 170809304 170809327 -71855026 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr1 170809536 170809573 -71854780 + AT_rich Low_complexity Low_complexity 1 37 0 1072 235 7 11 chr1 170809607 170809884 -71854469 - L1MD3 LINE L1 -1 7994 7719 630 45 0 23 chr1 170809904 170809992 -71854361 - L1PA11 LINE L1 -3 6171 6086 1512 139 31 0 chr1 170809992 170810250 -71854103 - L1P LINE L1 -775 5371 5106 21 36 0 0 chr1 170810254 170810282 -71854071 + AT_rich Low_complexity Low_complexity 1 28 0 437 270 96 4 chr1 170810289 170810519 -71853834 - L1M4 LINE L1 -1013 5133 4883 21 0 0 0 chr1 170810667 170810688 -71853665 + AT_rich Low_complexity Low_complexity 1 21 0 641 271 43 61 chr1 170810839 170811116 -71853237 - LTR16A LTR ERVL 0 450 179 1297 214 95 12 chr1 170811135 170811472 -71852881 - MLT1A1 LTR MaLR 0 365 1 183 42 0 0 chr1 170811700 170811724 -71852629 + (TTTTTA)n Simple_repeat Simple_repeat 6 29 0 329 294 113 56 chr1 170812038 170812090 -71852263 - L1MEd LINE L1 -5730 389 341 378 0 0 0 chr1 170812090 170812132 -71852221 + (TG)n Simple_repeat Simple_repeat 1 42 0 329 294 113 56 chr1 170812132 170812399 -71851954 - L1MEd LINE L1 -5778 341 52 42696 31 22 1 chr1 170812583 170818610 -71845743 + L1HS LINE L1 2 6155 0 203 175 0 0 chr1 170818621 170818661 -71845692 + A-rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr1 170818810 170818853 -71845500 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 170819202 170819223 -71845130 + AT_rich Low_complexity Low_complexity 1 21 0 276 259 28 9 chr1 170820620 170820728 -71843625 + (TA)n Simple_repeat Simple_repeat 2 111 0 261 0 0 0 chr1 170820735 170820764 -71843589 + (TG)n Simple_repeat Simple_repeat 2 30 0 595 192 8 18 chr1 170820800 170820928 -71843425 + MSTA LTR MaLR 1 135 -240 1507 127 81 15 chr1 170821079 170821339 -71843014 + MSTA LTR MaLR 152 428 0 350 358 41 28 chr1 170822531 170822749 -71841604 - HAL1b LINE L1 -690 658 438 38 39 0 0 chr1 170824962 170825014 -71839339 + AT_rich Low_complexity Low_complexity 1 52 0 2327 182 75 29 chr1 170826299 170826822 -71837531 - L1MC3 LINE L1 0 7785 7239 941 273 41 21 chr1 170826814 170827202 -71837151 - L1M4 LINE L1 -1671 4475 4080 * 1729 149 31 0 chr1 170827351 170827640 -71836713 - AluJo SINE Alu -14 298 1 1735 32 0 18 chr1 170828089 170828307 -71836046 - L1PA4 LINE L1 -1 6154 5941 13451 30 6 0 chr1 170828307 170830475 -71833878 + L1PA4 LINE L1 3774 5949 -206 336 194 14 28 chr1 170830796 170830868 -71833485 - LTR37A LTR ERV1 -355 71 1 629 267 65 61 chr1 170832247 170832524 -71831829 + MLT1H LTR MaLR 1 278 -271 2155 117 3 0 chr1 170833661 170833959 -71830394 - AluSq SINE Alu -13 300 2 2348 75 0 16 chr1 170834094 170834402 -71829951 - AluY SINE Alu -7 304 2 225 246 33 0 chr1 170834563 170834624 -71829729 - L2 LINE L2 0 3313 3251 430 331 62 4 chr1 170834656 170834931 -71829422 + L1ME4a LINE L1 5618 5908 -213 379 268 0 87 chr1 170835528 170835666 -71828687 - MLT1H LTR MaLR 0 549 424 228 246 105 70 chr1 170835775 170835889 -71828464 - MLT1H LTR MaLR -299 250 133 989 188 0 0 chr1 170836457 170836638 -71827715 - L1PB4 LINE L1 0 6156 5976 1390 196 70 53 chr1 170838115 170838472 -71825881 - MLT1A1 LTR MaLR 0 365 3 1448 101 0 14 chr1 170839483 170839691 -71824662 - L1PA8 LINE L1 -1 6171 5967 1000 33 0 0 chr1 170839692 170839814 -71824539 + L1PA8 LINE L1 5850 5971 -201 24 53 0 0 chr1 170839919 170839957 -71824396 + AT_rich Low_complexity Low_complexity 1 38 0 494 272 6 25 chr1 170840169 170840327 -71824026 - L2 LINE L2 0 3313 3159 1455 111 5 28 chr1 170840332 170840548 -71823805 + AluSx SINE Alu 33 243 -69 195 42 0 0 chr1 170840570 170840594 -71823759 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 389 345 136 49 chr1 170840956 170841443 -71822910 - L2 LINE L2 -508 2806 2278 186 272 37 49 chr1 170841482 170841563 -71822790 - L2 LINE L2 0 3313 3234 966 284 43 51 chr1 170842422 170843100 -71821253 + L2 LINE L2 2648 3313 0 284 96 19 19 chr1 170843288 170843340 -71821013 + L1MCc LINE L1 266 317 -6106 670 193 8 0 chr1 170843340 170843459 -71820894 + MLT1A2 LTR MaLR 244 363 -11 1607 258 56 71 chr1 170843470 170844369 -71819984 + L1ME3A LINE L1 2246 3130 -3016 6006 219 40 19 chr1 170844372 170844632 -71819721 - L1 LINE L1 -1190 4956 4703 2012 92 3 35 chr1 170844632 170844954 -71819399 + AluSx SINE Alu 9 321 0 6006 219 40 19 chr1 170844954 170846225 -71818128 - L1 LINE L1 -1443 4703 3391 4953 204 13 20 chr1 170846228 170847609 -71816744 + L1MA10 LINE L1 4954 6327 -7 852 287 25 32 chr1 170847635 170848067 -71816286 + L1ME3A LINE L1 3111 3539 -2607 23 0 0 0 chr1 170849664 170849687 -71814666 + AT_rich Low_complexity Low_complexity 1 23 0 430 315 20 0 chr1 170850813 170850959 -71813394 + L2 LINE L2 3165 3313 0 214 262 0 0 chr1 170853156 170853198 -71811155 + L2 LINE L2 3262 3303 -10 356 263 61 0 chr1 170855388 170855502 -71808851 + MER94 DNA DNA 1 121 -13 23 0 0 0 chr1 170855716 170855739 -71808614 + AT_rich Low_complexity Low_complexity 1 23 0 6358 174 28 11 chr1 170855781 170856991 -71807362 - L1PA13 LINE L1 -851 5295 4065 5465 119 21 4 chr1 170856987 170857828 -71806525 + L1PA13 LINE L1 5303 6158 -5 * 1770 160 16 19 chr1 170858250 170858745 -71805608 + AluSx SINE Alu 1 312 0 349 70 35 0 chr1 170858749 170858806 -71805547 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 337 322 154 38 chr1 170858878 170859145 -71805208 - L2 LINE L2 -1 3312 3015 2021 270 57 55 chr1 170859472 170860045 -71804308 + L1ME3A LINE L1 4790 5360 -810 2081 117 3 25 chr1 170860045 170860362 -71803991 + AluSx SINE Alu 3 312 0 2021 270 57 55 chr1 170860362 170860792 -71803561 + L1ME3A LINE L1 5360 5804 -366 416 313 33 28 chr1 170860792 170861006 -71803347 + MER58C DNA MER1_type 1 215 0 2021 270 57 55 chr1 170861006 170861365 -71802988 + L1ME3A LINE L1 5804 6161 -9 359 288 26 1 chr1 170861369 170861582 -71802771 + L1ME4a LINE L1 5661 5879 -242 24 0 0 0 chr1 170861747 170861771 -71802582 + AT_rich Low_complexity Low_complexity 1 24 0 1126 276 37 65 chr1 170862789 170863329 -71801024 + L2 LINE L2 2327 2851 -463 400 316 67 26 chr1 170864125 170864318 -71800035 + MIR SINE MIR 8 208 -54 628 277 189 47 chr1 170864597 170865026 -71799327 - LTR16C LTR ERVL -1 490 1 2408 61 0 3 chr1 170865774 170866084 -71798269 + AluY SINE Alu 1 309 -2 21 0 0 0 chr1 170866084 170866105 -71798248 + AT_rich Low_complexity Low_complexity 1 21 0 513 234 106 89 chr1 170866858 170867350 -71797003 + L1MEd LINE L1 730 1229 -4890 4160 178 48 50 chr1 170867448 170867671 -71796682 - L1MA10 LINE L1 -1 6333 6111 1336 146 169 11 chr1 170867671 170867932 -71796421 - AluJo SINE Alu 0 302 1 4160 178 48 50 chr1 170867932 170868799 -71795554 - L1MA10 LINE L1 -223 6111 5244 204 40 0 0 chr1 170868799 170868824 -71795529 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 315 0 0 0 chr1 170868823 170868858 -71795495 + (TG)n Simple_repeat Simple_repeat 2 36 0 4160 178 48 50 chr1 170868824 170869336 -71795017 - L1MA10 LINE L1 -1090 5244 4781 1169 198 8 4 chr1 170869335 170869578 -71794775 + L1PB4 LINE L1 3813 4056 -2090 * 2507 46 7 0 chr1 170870959 170871263 -71793090 - AluY SINE Alu -5 306 1 821 228 68 59 chr1 170871513 170872121 -71792232 - LTR48 LTR ERV1 -1 786 1 983 171 8 2 chr1 170872231 170872488 -71791865 + AluJb SINE Alu 1 311 -1 251 298 61 61 chr1 170872528 170872659 -71791694 - MIR SINE MIR -98 164 34 183 245 57 19 chr1 170872662 170872715 -71791638 + L2 LINE L2 3237 3291 -22 1884 145 9 3 chr1 170873582 170873900 -71790453 + L1MA6 LINE L1 5981 6300 0 21 36 0 0 chr1 170873956 170873984 -71790369 + AT_rich Low_complexity Low_complexity 1 28 0 271 260 65 0 chr1 170873989 170874066 -71790287 + L2 LINE L2 3152 3233 -39 5618 186 28 29 chr1 170874393 170874649 -71789704 + L1PB4 LINE L1 4078 4333 -1813 2312 97 3 0 chr1 170874649 170874959 -71789394 + AluY SINE Alu 1 311 0 5618 186 28 29 chr1 170874959 170875955 -71788398 + L1PB4 LINE L1 4333 5329 -817 1667 130 4 0 chr1 170875957 170876195 -71788158 + AluSq SINE Alu 36 274 -39 1760 227 2 2 chr1 170876195 170876591 -71787762 + L1PB4 LINE L1 5760 6155 -1 22 0 0 0 chr1 170876887 170876909 -71787444 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 170877417 170877446 -71786907 + AT_rich Low_complexity Low_complexity 1 29 0 200 164 18 55 chr1 170878107 170878162 -71786191 + T-rich Low_complexity Low_complexity 5 57 0 261 242 0 129 chr1 170878210 170878344 -71786009 + MIR SINE MIR 44 160 -62 382 277 164 71 chr1 170878866 170878972 -71785381 + MIR SINE MIR 3 98 -164 2219 121 0 0 chr1 170878972 170879270 -71785083 - AluSg SINE Alu -12 298 1 382 277 164 71 chr1 170879270 170879401 -71784952 + MIR SINE MIR 98 262 0 5177 94 18 1 chr1 170879807 170880529 -71783824 - L1PA10 LINE L1 -9 6159 5426 256 146 0 21 chr1 170881076 170881124 -71783229 - MER74A LTR ERVL -215 343 297 532 265 41 18 chr1 170881585 170881755 -71782598 - MER5B DNA MER1_type 0 178 5 861 216 163 42 chr1 170882558 170882698 -71781655 + MER58B DNA MER1_type 10 132 -2288 2235 95 0 13 chr1 170882698 170883003 -71781350 + AluY SINE Alu 1 301 -10 861 216 163 42 chr1 170883003 170883145 -71781208 + MER58B DNA MER1_type 132 326 -15 211 380 99 14 chr1 170883334 170883476 -71780877 - L2 LINE L2 0 3272 3119 181 175 95 79 chr1 170883651 170883714 -71780639 + L2 LINE L2 2718 2781 -533 22 0 0 0 chr1 170883740 170883762 -71780591 + AT_rich Low_complexity Low_complexity 1 22 0 791 11 0 0 chr1 170885757 170885847 -71778506 - L1PA4 LINE L1 -8 6147 6058 1027 64 7 7 chr1 170885849 170885990 -71778363 + L1P2 LINE L1 5607 5747 -407 244 320 41 0 chr1 170886293 170886390 -71777963 - MER117 DNA MER1_type -52 145 45 453 103 0 0 chr1 170886453 170886521 -71777832 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 258 32 0 0 chr1 170886995 170887026 -71777327 + (TC)n Simple_repeat Simple_repeat 2 32 0 273 196 0 0 chr1 170887026 170887082 -71777271 + (TA)n Simple_repeat Simple_repeat 2 57 0 6434 141 20 6 chr1 170887083 170888169 -71776184 + L1P LINE L1 4261 5362 -784 874 196 12 6 chr1 170888495 170888668 -71775685 - FAM SINE Alu 0 175 2 23 0 0 0 chr1 170888971 170888994 -71775359 + AT_rich Low_complexity Low_complexity 1 23 0 29 70 0 0 chr1 170889460 170889517 -71774836 + AT_rich Low_complexity Low_complexity 1 57 0 189 107 0 0 chr1 170890788 170890816 -71773537 + (TC)n Simple_repeat Simple_repeat 1 28 0 241 229 29 14 chr1 170891136 170891206 -71773147 - L1ME4a LINE L1 -72 6049 5979 180 0 0 0 chr1 170891492 170891512 -71772841 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 455 332 32 0 chr1 170892524 170892711 -71771642 + MLT1J LTR MaLR 4 196 -315 300 329 12 99 chr1 170893553 170893714 -71770639 + L2 LINE L2 3126 3272 0 225 0 0 0 chr1 170895447 170895472 -71768881 + (TG)n Simple_repeat Simple_repeat 2 26 0 203 250 0 0 chr1 170895512 170895552 -71768801 + (TG)n Simple_repeat Simple_repeat 2 41 0 385 291 24 48 chr1 170896461 170896626 -71767727 + MIR SINE MIR 47 207 -55 455 345 99 4 chr1 170896878 170897110 -71767243 - MIR SINE MIR 0 262 9 22 0 0 0 chr1 170897404 170897426 -71766927 + AT_rich Low_complexity Low_complexity 1 22 0 333 295 133 17 chr1 170898514 170898687 -71765666 - MIR SINE MIR -17 245 53 1388 223 7 7 chr1 170899284 170899588 -71764765 - AluJo SINE Alu 0 304 1 577 196 101 30 chr1 170899611 170899779 -71764574 - MER53 DNA DNA -3 186 7 240 214 12 71 chr1 170899785 170899869 -71764484 + L1ME4a LINE L1 5856 5934 -187 447 19 0 0 chr1 170900138 170900190 -71764163 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 522 218 0 10 chr1 170900610 170900711 -71763642 - MER94 DNA DNA -33 101 2 208 318 16 0 chr1 170901147 170901210 -71763143 + L2 LINE L2 3248 3311 -2 292 258 24 24 chr1 170901331 170901455 -71762898 - L1MC5 LINE L1 -723 7238 7115 328 174 72 0 chr1 170901913 170901982 -71762371 - MIR SINE MIR 0 262 189 836 161 0 29 chr1 170903269 170903406 -71760947 + FLAM_C SINE Alu 1 133 -10 21 36 0 0 chr1 170903445 170903473 -71760880 + AT_rich Low_complexity Low_complexity 1 28 0 4894 121 16 9 chr1 170903487 170903789 -71760564 + L1MA1 LINE L1 5523 5822 -480 2174 66 0 0 chr1 170903789 170904074 -71760279 + AluY SINE Alu 27 311 0 4894 121 16 9 chr1 170904074 170904545 -71759808 + L1MA1 LINE L1 5822 6302 0 294 29 0 0 chr1 170904581 170904616 -71759737 + (CA)n Simple_repeat Simple_repeat 2 36 0 2285 207 47 13 chr1 170904623 170905073 -71759280 - MLT2B1 LTR ERVL -55 465 1 367 297 40 34 chr1 170906207 170906382 -71757971 - MIR SINE MIR -29 233 58 2124 180 55 72 chr1 170906421 170906949 -71757404 - MLT2B1 LTR ERVL -1 519 1 444 342 65 13 chr1 170906954 170907185 -71757168 + MIR SINE MIR 2 244 -18 718 186 0 14 chr1 170907521 170907666 -71756687 - FLAM_C SINE Alu 0 143 1 430 374 45 0 chr1 170907689 170907911 -71756442 - MIR SINE MIR -16 246 15 315 342 17 8 chr1 170908385 170908505 -71755848 - MIR3 SINE MIR 0 208 88 21 36 0 0 chr1 170909906 170909934 -71754419 + AT_rich Low_complexity Low_complexity 1 28 0 194 246 18 35 chr1 170910105 170910162 -71754191 + L2 LINE L2 3258 3313 0 2177 107 3 7 chr1 170910234 170910533 -71753820 + AluSx SINE Alu 3 300 -12 1120 109 33 0 chr1 170911117 170911301 -71753052 - L1MA5A LINE L1 -6 6291 6102 200 349 0 0 chr1 170911392 170911458 -71752895 - L2 LINE L2 -9 3263 3198 687 237 64 0 chr1 170912197 170912353 -71752000 - FAM SINE Alu -9 166 1 36 40 0 0 chr1 170912695 170912745 -71751608 + AT_rich Low_complexity Low_complexity 1 50 0 1610 192 7 16 chr1 170913452 170913759 -71750594 - AluJo SINE Alu -7 305 2 3597 182 26 50 chr1 170913804 170915165 -71749188 - L1M2 LINE L1 -536 5776 4463 649 237 35 18 chr1 170915165 170915393 -71748960 + L1 LINE L1 2969 3200 -2946 * 4604 157 43 26 chr1 170915370 170915621 -71748732 + L1 LINE L1 3456 3701 -2445 2210 121 31 6 chr1 170915621 170915976 -71748377 + THE1B LTR MaLR 1 364 0 4604 157 43 26 chr1 170915976 170916679 -71747674 + L1 LINE L1 3701 4426 -1720 281 361 57 0 chr1 170916701 170916823 -71747530 + L2 LINE L2 3181 3309 -4 216 0 0 0 chr1 170917707 170917731 -71746622 + (A)n Simple_repeat Simple_repeat 1 24 0 286 303 32 72 chr1 170918102 170918323 -71746030 + MIR SINE MIR 49 260 -2 584 227 40 40 chr1 170918780 170918930 -71745423 + MIR SINE MIR 8 157 -105 561 307 68 11 chr1 170919189 170919365 -71744988 + MIR SINE MIR 67 252 -10 322 357 164 20 chr1 170920369 170921056 -71743297 - L2 LINE L2 -797 2517 1732 890 186 102 143 chr1 170921165 170921714 -71742639 - MER67C LTR ERV1 -4 510 2 24 0 0 0 chr1 170924035 170924059 -71740294 + AT_rich Low_complexity Low_complexity 1 24 0 35 54 0 0 chr1 170924220 170924276 -71740077 + AT_rich Low_complexity Low_complexity 1 56 0 393 280 123 24 chr1 170924284 170924495 -71739858 - Charlie7 DNA MER1_type -2367 245 14 22 0 0 0 chr1 170926493 170926515 -71737838 + AT_rich Low_complexity Low_complexity 1 22 0 398 315 116 76 chr1 170927641 170928350 -71736003 + L1M4 LINE L1 3559 4307 -1839 4384 126 23 32 chr1 170928350 170929120 -71735233 + L1MA2 LINE L1 5542 6304 0 398 315 116 76 chr1 170929120 170929238 -71735115 + L1M4 LINE L1 4307 4419 -1727 1096 191 85 14 chr1 170929247 170929454 -71734899 + MER33 DNA MER1_type 1 235 -2350 1680 47 0 9 chr1 170929454 170929665 -71734688 - AluY SINE Alu -10 301 93 1096 191 85 14 chr1 170929665 170929739 -71734614 + MER33 DNA MER1_type 235 302 -22 24 67 0 0 chr1 170930344 170930389 -71733964 + AT_rich Low_complexity Low_complexity 1 45 0 511 351 14 14 chr1 170930441 170930649 -71733704 - MIR SINE MIR -49 213 6 1093 152 20 5 chr1 170930947 170931144 -71733209 - L1MA3 LINE L1 -2 6303 6104 2080 121 0 7 chr1 170931200 170931528 -71732825 + AluSx SINE Alu 1 312 0 1486 212 22 26 chr1 170933755 170934143 -71730210 + MER89 LTR ERV1 3 487 -72 1643 191 7 0 chr1 170934222 170934515 -71729838 - AluJb SINE Alu -17 295 1 771 233 44 0 chr1 170934540 170934720 -71729633 - MLT2B1 LTR ERVL -321 199 12 348 265 53 33 chr1 170935144 170935295 -71729058 + MER103 DNA DNA 8 161 -5 273 333 43 31 chr1 170935483 170935645 -71728708 - MIR SINE MIR -46 216 53 333 313 10 0 chr1 170935791 170935890 -71728463 + MIR SINE MIR 48 147 -115 524 267 125 20 chr1 170935897 170936193 -71728160 - MER46C DNA MER2_type -1 337 11 398 171 36 81 chr1 170936196 170936307 -71728046 + MIR SINE MIR 154 259 -3 15640 169 21 18 chr1 170937210 170939928 -71724425 + L1MA1 LINE L1 12 2721 -5000 220 26 26 26 chr1 170939928 170939966 -71724387 + (CAA)n Simple_repeat Simple_repeat 2 39 0 15640 169 21 18 chr1 170939966 170944719 -71719634 + L1MA1 LINE L1 2721 7630 -91 1262 61 0 0 chr1 170944720 170944868 -71719485 - AluSg SINE Alu -162 148 1 2270 63 0 3 chr1 170945127 170945442 -71718911 + AluY SINE Alu 1 314 0 2947 154 19 25 chr1 170945990 170946503 -71717850 - MLT2B1 LTR ERVL -6 514 5 265 242 61 30 chr1 170947060 170947192 -71717161 + L1ME4a LINE L1 5764 5899 -222 257 318 0 0 chr1 170947209 170947297 -71717056 + L1ME4a LINE L1 5947 6034 -87 24 53 0 0 chr1 170947355 170947393 -71716960 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 170948266 170948290 -71716063 + AT_rich Low_complexity Low_complexity 1 24 0 259 152 15 15 chr1 170948997 170949063 -71715290 + GA-rich Low_complexity Low_complexity 1 66 0 409 298 53 103 chr1 170949648 170949967 -71714386 + L2 LINE L2 2637 2939 -375 2226 103 7 7 chr1 170950108 170950409 -71713944 + AluSx SINE Alu 1 301 -11 242 367 84 38 chr1 170950981 170951218 -71713135 - L2 LINE L2 -846 2468 2221 2748 87 0 6 chr1 170951535 170951901 -71712452 - THE1B LTR MaLR 0 364 1 389 334 167 13 chr1 170951902 170952297 -71712056 - L2 LINE L2 -1098 2216 1761 219 88 0 0 chr1 170952619 170952653 -71711700 + (CA)n Simple_repeat Simple_repeat 1 34 0 180 176 0 0 chr1 170952689 170952723 -71711630 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 320 0 25 0 chr1 170953046 170953086 -71711267 + (TA)n Simple_repeat Simple_repeat 2 42 0 331 305 51 8 chr1 170953924 170954042 -71710311 + MER5C DNA MER1_type 2 124 -200 2149 121 50 19 chr1 170954173 170954537 -71709816 + THE1C LTR MaLR 1 375 0 203 195 0 24 chr1 170954759 170954800 -71709553 + CT-rich Low_complexity Low_complexity 3 42 0 23 0 0 0 chr1 170954901 170954924 -71709429 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 170955637 170955660 -71708693 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr1 170956330 170956359 -71707994 + AT_rich Low_complexity Low_complexity 1 29 0 483 73 0 0 chr1 170956710 170956778 -71707575 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 1502 205 29 0 chr1 170957529 170957802 -71706551 - AluJo SINE Alu -28 284 4 315 0 0 0 chr1 170957802 170957837 -71706516 + (TG)n Simple_repeat Simple_repeat 1 35 0 233 214 0 0 chr1 170958307 170958349 -71706004 - MLT1L LTR MaLR -405 210 169 833 200 41 6 chr1 170958891 170959061 -71705292 + FRAM SINE Alu 1 176 0 234 83 0 0 chr1 170959061 170959097 -71705256 + Alu SINE Alu 1 36 -265 1477 131 9 0 chr1 170959098 170959320 -71705033 + AluSg/x SINE Alu 85 308 -2 27 49 0 0 chr1 170959475 170959516 -71704837 + AT_rich Low_complexity Low_complexity 1 41 0 386 295 87 54 chr1 170960512 170960753 -71703600 - L2 LINE L2 -809 2505 2257 340 162 135 108 chr1 170960964 170961048 -71703305 - MER92C LTR ERV1 -21 533 444 1909 132 7 36 chr1 170961048 170961351 -71703002 - AluSx SINE Alu -18 294 1 340 162 135 108 chr1 170961351 170961377 -71702976 - MER92C LTR ERV1 -110 444 420 788 139 39 0 chr1 170961517 170961646 -71702707 - L1PA16 LINE L1 -4 6162 6029 2113 83 10 13 chr1 170961646 170961946 -71702407 - AluY SINE Alu -12 299 1 2500 241 41 53 chr1 170962235 170963305 -71701048 - L1M4 LINE L1 -1822 4324 3268 2478 154 29 12 chr1 170964107 170964528 -71699825 + MSTA LTR MaLR 1 428 0 339 246 9 137 chr1 170966186 170966397 -71697956 + MLT1K LTR MaLR 365 548 -40 620 119 40 0 chr1 170966854 170966980 -71697373 + CT-rich Low_complexity Low_complexity 2 132 0 1595 191 24 6 chr1 170966984 170967324 -71697029 - L1PB4 LINE L1 -3 6153 5808 2110 138 3 0 chr1 170968392 170968696 -71695657 - AluSx SINE Alu -7 305 1 259 214 100 57 chr1 170968870 170968940 -71695413 - MER91B DNA MER1_type -112 78 6 2039 106 29 0 chr1 170969172 170969446 -71694907 - AluSx SINE Alu -30 282 1 27 49 0 0 chr1 170969746 170969787 -71694566 + AT_rich Low_complexity Low_complexity 1 41 0 2015 133 3 25 chr1 170970430 170970745 -71693608 - AluSx SINE Alu -4 308 1 452 274 163 80 chr1 170973422 170973900 -71690453 - MLT1H1 LTR MaLR -2 553 36 24 32 0 0 chr1 170975491 170975522 -71688831 + AT_rich Low_complexity Low_complexity 1 31 0 2313 184 28 0 chr1 170975560 170976017 -71688336 - L1MA6 LINE L1 -4 6296 5827 229 278 144 0 chr1 170976169 170976266 -71688087 + L2 LINE L2 3199 3309 -4 210 253 40 27 chr1 170978012 170978087 -71686266 + CT-rich Low_complexity Low_complexity 6 81 0 2259 155 197 29 chr1 170978820 170979343 -71685010 - LTR18B LTR ERVL 0 614 4 1016 240 35 60 chr1 170979896 170980296 -71684057 - MLT2C1 LTR ERVL -7 390 1 2012 158 21 19 chr1 170980638 170981012 -71683341 + THE1C LTR MaLR 1 375 0 27 29 0 0 chr1 170981021 170981055 -71683298 + AT_rich Low_complexity Low_complexity 1 34 0 1605 214 0 19 chr1 170981377 170981695 -71682658 + AluJo SINE Alu 1 312 0 381 299 87 53 chr1 170983149 170983413 -71680940 - L2 LINE L2 -1106 2208 1936 358 349 52 41 chr1 170983957 170984301 -71680052 - L2 LINE L2 -1571 1743 1396 358 353 68 68 chr1 170984303 170984717 -71679636 - L2 LINE L2 0 3272 2859 419 392 43 11 chr1 170985226 170985596 -71678757 - L2 LINE L2 -743 2571 2190 238 286 120 57 chr1 170985782 170985974 -71678379 - L2 LINE L2 -1361 1953 1750 450 283 151 12 chr1 170986134 170986385 -71677968 - L1ME4a LINE L1 -11 6110 5825 2067 127 20 28 chr1 170986387 170986741 -71677612 - L1PB4 LINE L1 -16 6140 5790 1338 245 37 23 chr1 170986741 170987405 -71676948 - L1PBb LINE L1 -4842 1362 690 1058 323 18 10 chr1 170987382 170987860 -71676493 - L1PBb LINE L1 -5276 927 354 * 661 384 0 7 chr1 170987974 170988284 -71676069 - L1PBb LINE L1 -5844 360 53 533 343 36 71 chr1 170988312 170989035 -71675318 - L1M2b LINE L1 -5223 1986 56 3652 157 32 30 chr1 170989589 170990315 -71674038 - LTR8A LTR ERV1 0 727 1 457 171 34 11 chr1 170991029 170991117 -71673236 + MER4A LTR ERV1 1 90 -574 2268 113 0 3 chr1 170991117 170991428 -71672925 - AluSg SINE Alu 0 310 1 1565 155 35 22 chr1 170991444 170991785 -71672568 + MER4A LTR ERV1 261 664 0 2214 132 130 67 chr1 170991788 170992780 -71671573 + MER4A-int LTR ERV1 1 1152 -5446 414 0 0 0 chr1 170992780 170992826 -71671527 + (TG)n Simple_repeat Simple_repeat 1 46 0 2214 132 130 67 chr1 170992826 170992892 -71671461 + MER4A-int LTR ERV1 1152 1212 -5386 705 196 12 18 chr1 170992886 170993054 -71671299 + MER4-int LTR ERV1 3396 3562 -3036 * 1525 108 14 9 chr1 170993057 170993279 -71671074 + MER4B LTR ERV1 388 610 0 232 368 55 55 chr1 170994222 170994475 -71669878 - L2 LINE L2 0 3272 3020 1899 164 7 0 chr1 170997261 170997559 -71666794 + AluJb SINE Alu 1 300 -12 236 315 15 108 chr1 170998045 170998175 -71666178 + MIR3 SINE MIR 66 183 -25 276 172 0 0 chr1 171000421 171000479 -71663874 + (TA)n Simple_repeat Simple_repeat 1 58 0 285 273 16 55 chr1 171000503 171000631 -71663722 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 279 0 0 0 chr1 171000636 171000667 -71663686 + (TG)n Simple_repeat Simple_repeat 2 32 0 335 336 28 37 chr1 171001064 171001278 -71663075 + L1M4 LINE L1 3789 4000 -2146 1973 117 0 14 chr1 171001412 171001695 -71662658 - AluSg SINE Alu -9 301 23 1228 235 8 4 chr1 171003204 171003447 -71660906 - LTR40a LTR ERVL -5 514 271 2579 119 0 70 chr1 171003600 171003966 -71660387 - L1PA16 LINE L1 -139 6027 5698 2239 91 10 3 chr1 171003966 171004264 -71660089 + AluSx SINE Alu 2 301 -11 2579 119 0 70 chr1 171004264 171004352 -71660001 - L1PA16 LINE L1 -468 5698 5605 4394 182 25 11 chr1 171004352 171005624 -71658729 + L1PA16 LINE L1 4319 5608 -557 64 67 0 0 chr1 171006078 171006198 -71658155 + AT_rich Low_complexity Low_complexity 1 120 0 2090 61 0 182 chr1 171006313 171006737 -71657616 - L1P LINE L1 -1119 5027 4681 6749 69 9 2 chr1 171006737 171007709 -71656644 + L1PA7 LINE L1 5177 6154 0 244 234 109 31 chr1 171008834 171008962 -71655391 + L1ME4a LINE L1 5959 6096 -25 24 0 0 0 chr1 171008988 171009012 -71655341 + AT_rich Low_complexity Low_complexity 1 24 0 601 283 9 5 chr1 171009389 171009608 -71654745 - HsTC2a DNA Tc2 -10 732 513 4998 130 8 9 chr1 171009635 171010426 -71653927 + L1PA15 LINE L1 5372 6161 -4 286 218 0 0 chr1 171010428 171010483 -71653870 - HsTC2a DNA Tc2 -261 481 427 301 291 90 26 chr1 171010720 171010909 -71653444 - HsTC2a DNA Tc2 -501 243 43 30 0 0 0 chr1 171011410 171011440 -71652913 + AT_rich Low_complexity Low_complexity 1 30 0 1419 168 10 33 chr1 171011938 171012241 -71652112 - L1MA9 LINE L1 -4 6308 6013 25 90 0 0 chr1 171012265 171012332 -71652021 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr1 171013990 171014012 -71650341 + AT_rich Low_complexity Low_complexity 1 22 0 462 311 43 12 chr1 171014346 171014507 -71649846 + MIR SINE MIR 40 205 -57 225 0 0 0 chr1 171016330 171016355 -71647998 + (CA)n Simple_repeat Simple_repeat 2 26 0 546 101 0 11 chr1 171016360 171016449 -71647904 - L1PA14 LINE L1 -1 6160 6073 23 0 0 0 chr1 171016468 171016491 -71647862 + AT_rich Low_complexity Low_complexity 1 23 0 5599 117 11 1 chr1 171016505 171017505 -71646848 - L1PA14 LINE L1 -99 6062 5048 29 0 0 0 chr1 171017793 171017822 -71646531 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 171018216 171018245 -71646108 + AT_rich Low_complexity Low_complexity 1 29 0 253 295 67 96 chr1 171018533 171018919 -71645434 + L1M3d LINE L1 3 377 -5514 1497 250 70 36 chr1 171019091 171019918 -71644435 + L1M4c LINE L1 544 1793 -4520 * 13432 202 28 9 chr1 171019917 171023144 -71641209 - L1 LINE L1 -773 6792 3507 1874 247 52 16 chr1 171023145 171023946 -71640407 + L1M4c LINE L1 2195 3027 -3355 1347 229 3 24 chr1 171023965 171024258 -71640095 - AluJo SINE Alu -25 287 1 1725 171 141 11 chr1 171024296 171024671 -71639682 + MSTA LTR MaLR 1 424 -4 8449 149 12 44 chr1 171024677 171026190 -71638163 + MSTA-int LTR MaLR 3 1466 -114 185 0 0 39 chr1 171026192 171026218 -71638135 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 761 186 0 0 chr1 171026259 171026388 -71637965 - FRAM SINE Alu -8 168 40 698 112 0 28 chr1 171026388 171026495 -71637858 + THE1-int LTR MaLR 942 1045 -535 * 791 164 13 0 chr1 171026487 171026639 -71637714 + MSTA-int LTR MaLR 1498 1651 0 1927 141 138 11 chr1 171026690 171027045 -71637308 + MSTA LTR MaLR 29 428 0 1333 260 42 42 chr1 171027051 171027241 -71637112 + L1M4c LINE L1 3087 3276 -3106 1829 171 0 16 chr1 171027241 171027545 -71636808 + AluJo SINE Alu 1 299 -13 1333 260 42 42 chr1 171027545 171028066 -71636287 + L1M4c LINE L1 3275 3798 -2584 4887 171 40 13 chr1 171028316 171029365 -71634988 - L1MA8 LINE L1 -3 6288 5213 2672 193 40 33 chr1 171029363 171030059 -71634294 - L1MA8 LINE L1 -1143 5003 4303 * 1886 154 28 41 chr1 171030060 171030328 -71634025 + L1MB3 LINE L1 5792 6055 -128 1853 104 12 4 chr1 171030328 171030579 -71633774 + AluSp SINE Alu 43 295 -18 1886 154 28 41 chr1 171030579 171030699 -71633654 + L1MB3 LINE L1 6055 6175 -8 556 221 83 0 chr1 171030706 171030851 -71633502 + L1MC2 LINE L1 5820 5976 -368 * 4355 260 20 38 chr1 171030850 171032068 -71632285 + L1PA15-16 LINE L1 1 1197 -5652 300 309 10 0 chr1 171032075 171032172 -71632181 + L1PA15-16 LINE L1 866 963 -5886 1590 271 54 6 chr1 171032177 171032712 -71631641 + L1PA15-16 LINE L1 2285 2845 -4004 4864 158 26 5 chr1 171032830 171033770 -71630583 + L1PB4 LINE L1 5211 6298 0 372 291 147 28 chr1 171033918 171034238 -71630115 - L1ME4a LINE L1 -9 6112 5755 403 259 0 17 chr1 171034308 171034424 -71629929 + L1MC2 LINE L1 5952 6065 -279 1078 344 24 17 chr1 171034434 171034855 -71629498 - ERVL LTR ERVL -1953 3811 3388 743 335 48 19 chr1 171035203 171035636 -71628717 - ERVL LTR ERVL -2084 2912 2467 2448 7 0 0 chr1 171035675 171035952 -71628401 + L1PA2 LINE L1 5877 6153 -2 938 336 39 19 chr1 171036029 171036440 -71627913 - ERVL LTR ERVL -3421 2343 1925 281 80 0 20 chr1 171036516 171036566 -71627787 + (TC)n Simple_repeat Simple_repeat 2 50 0 1504 163 216 13 chr1 171036593 171036973 -71627380 - MSTB2 LTR MaLR 0 457 1 22 0 0 0 chr1 171037344 171037366 -71626987 + AT_rich Low_complexity Low_complexity 1 22 0 1035 145 95 5 chr1 171037587 171037787 -71626566 + L1PB1 LINE L1 5932 6149 -2 408 242 46 169 chr1 171037891 171038110 -71626243 + MIR SINE MIR 51 242 -20 1318 154 5 0 chr1 171038350 171038558 -71625795 + MER2 DNA MER2_type 2 210 -135 836 310 33 69 chr1 171038888 171039637 -71624716 + HAL1 LINE L1 458 1179 -1328 306 303 35 28 chr1 171039886 171040031 -71624322 + HAL1 LINE L1 1637 1782 -725 311 113 19 0 chr1 171040922 171040975 -71623378 + GA-rich Low_complexity Low_complexity 3 56 0 25 31 0 0 chr1 171041409 171041441 -71622912 + AT_rich Low_complexity Low_complexity 1 32 0 266 348 62 0 chr1 171041664 171041825 -71622528 - MIR SINE MIR -8 254 84 1922 167 47 59 chr1 171041941 171041978 -71622375 - MSTB1 LTR MaLR -12 420 384 203 32 65 0 chr1 171041978 171042009 -71622344 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1922 167 47 59 chr1 171042009 171042396 -71621957 - MSTB1 LTR MaLR -48 384 1 1601 234 40 27 chr1 171042542 171042943 -71621410 + L1MC4 LINE L1 19 424 -6002 * 3567 230 13 84 chr1 171042921 171044165 -71620188 + L1MC4 LINE L1 3383 4538 -1888 19663 166 22 15 chr1 171044171 171044499 -71619854 + L1MA1 LINE L1 12 336 -7388 1485 138 13 0 chr1 171044499 171044724 -71619629 + AluSg/x SINE Alu 72 299 -13 19663 166 22 15 chr1 171044724 171047728 -71616625 + L1MA1 LINE L1 336 3318 -4406 2236 102 7 3 chr1 171047728 171048031 -71616322 + AluSq SINE Alu 6 309 -4 19663 166 22 15 chr1 171048031 171052407 -71611946 + L1MA1 LINE L1 3318 7724 0 1737 250 45 26 chr1 171052389 171053006 -71611347 + L1MC4 LINE L1 4528 5156 -1270 * 328 286 5 141 chr1 171053330 171053522 -71610831 + L1MC4 LINE L1 5771 5936 -2152 1932 176 29 42 chr1 171053522 171053976 -71610377 + L1MA5 LINE L1 5853 6300 0 189 0 0 0 chr1 171054343 171054364 -71609989 + (TG)n Simple_repeat Simple_repeat 2 22 0 2715 6 3 3 chr1 171055000 171055311 -71609042 - AluYa5 SINE Alu 0 311 1 420 97 0 0 chr1 171056285 171056347 -71608006 + (CA)n Simple_repeat Simple_repeat 1 62 0 4544 152 58 11 chr1 171056478 171057336 -71607017 + L1MC1 LINE L1 5435 6333 0 419 270 7 29 chr1 171058396 171058533 -71605820 + MIR SINE MIR 91 224 -38 12837 36 2 0 chr1 171058744 171061058 -71603295 - L1PA6 LINE L1 -6 6148 3819 8244 55 4 1 chr1 171061058 171062144 -71602209 - L1PA6 LINE L1 -2623 3523 2435 * 9085 60 4 2 chr1 171062143 171063340 -71601013 + L1PA6 LINE L1 1221 2419 -3727 306 247 20 73 chr1 171063354 171063504 -71600849 + L1MC4 LINE L1 6906 7047 -1275 1596 64 0 0 chr1 171063732 171063935 -71600418 + L1P3 LINE L1 5487 5689 -465 899 37 0 0 chr1 171063981 171064090 -71600263 + L1PA5 LINE L1 6037 6145 -9 743 229 11 11 chr1 171064108 171064283 -71600070 - L1MC4 LINE L1 -1431 6611 6437 1999 122 0 32 chr1 171064483 171064795 -71599558 + AluSg SINE Alu 6 307 -3 417 317 50 17 chr1 171065344 171065524 -71598829 + MIR SINE MIR 52 237 -25 13022 191 54 25 chr1 171065819 171069214 -71595139 - L1MA6 LINE L1 0 7719 4109 2060 139 0 0 chr1 171069214 171069508 -71594845 + AluSq SINE Alu 1 294 -19 13022 191 54 25 chr1 171069508 171070960 -71593393 - L1MA6 LINE L1 -3610 4109 2701 1284 294 83 37 chr1 171070966 171071634 -71592719 - L1MA6 LINE L1 -6154 1412 358 603 241 62 46 chr1 171071773 171071968 -71592385 + MIR SINE MIR 33 230 -32 3441 184 30 4 chr1 171073524 171074440 -71589913 - L1MA10 LINE L1 -228 5940 4998 1422 205 26 39 chr1 171074436 171074826 -71589527 + L1MA10 LINE L1 5947 6331 -3 * 1867 277 69 19 chr1 171075903 171075950 -71588403 + L1ME LINE L1 205 248 -5822 1356 216 70 49 chr1 171075950 171076338 -71588015 - MSTD LTR MaLR 0 396 1 1867 277 69 19 chr1 171076338 171076534 -71587819 + L1ME LINE L1 248 433 -5637 2363 127 61 19 chr1 171076534 171076945 -71587408 + MSTA LTR MaLR 1 428 0 1867 277 69 19 chr1 171076945 171077455 -71586898 + L1ME LINE L1 433 997 -5073 629 235 15 0 chr1 171081713 171081849 -71582504 + Charlie4 DNA MER1_type 1818 1955 -6 237 65 0 0 chr1 171082106 171082137 -71582216 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2032 145 0 0 chr1 171082735 171083032 -71581321 - AluSx SINE Alu -13 299 3 1166 293 65 42 chr1 171083827 171084700 -71579653 + L2 LINE L2 2421 3311 -2 438 229 28 9 chr1 171085266 171085375 -71578978 + MER81 DNA DNA 4 114 0 257 382 59 21 chr1 171086648 171086834 -71577519 + L2 LINE L2 2297 2489 -825 2669 113 8 0 chr1 171087738 171088135 -71576218 - L1MA1 LINE L1 0 6302 5903 209 390 73 29 chr1 171088137 171088273 -71576080 - L2 LINE L2 -13 3259 3118 1729 114 11 4 chr1 171088387 171088659 -71575694 + L1PB1 LINE L1 5870 6143 -8 210 222 0 0 chr1 171089277 171089331 -71575022 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 2402 74 0 0 chr1 171089488 171089786 -71574567 + AluY SINE Alu 1 326 0 253 0 0 0 chr1 171089786 171089814 -71574539 + (TAAAA)n Simple_repeat Simple_repeat 3 170 0 393 110 0 0 chr1 171090409 171090482 -71573871 + (TA)n Simple_repeat Simple_repeat 2 74 0 206 241 0 0 chr1 171090584 171090638 -71573715 + A-rich Low_complexity Low_complexity 1 54 0 423 263 256 0 chr1 171091909 171092046 -71572307 + MER5A DNA MER1_type 4 175 -14 21 0 0 0 chr1 171092178 171092199 -71572154 + AT_rich Low_complexity Low_complexity 1 21 0 371 274 77 90 chr1 171093197 171093413 -71570940 - MIR SINE MIR -19 243 21 2233 54 20 20 chr1 171093426 171093724 -71570629 - AluY SINE Alu -13 298 1 2051 71 4 0 chr1 171093737 171094005 -71570348 - L1PA7 LINE L1 -3 6151 5883 260 320 62 57 chr1 171094103 171094347 -71570006 - L2 LINE L2 -199 3073 2829 365 330 67 16 chr1 171094422 171094616 -71569737 - HAL1 LINE L1 -1455 1052 849 498 273 16 8 chr1 171094704 171094832 -71569521 - MER5B DNA MER1_type -43 135 7 1847 130 14 0 chr1 171095063 171095348 -71569005 + L1PA16 LINE L1 5856 6144 -22 2426 138 19 12 chr1 171095348 171095760 -71568593 + L1PA15 LINE L1 5738 6160 -5 1970 112 0 21 chr1 171096004 171096289 -71568064 - AluSc SINE Alu -30 279 1 257 320 66 25 chr1 171096352 171096474 -71567879 + L2 LINE L2 3144 3270 -2 497 316 60 56 chr1 171097085 171097534 -71566819 - HAL1 LINE L1 -1965 542 92 415 301 81 12 chr1 171097889 171098062 -71566291 - MIR SINE MIR -19 243 59 416 275 15 23 chr1 171098351 171098482 -71565871 - L3b LINE CR1 -213 1370 1241 235 188 14 14 chr1 171100017 171100086 -71564267 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 626 337 12 16 chr1 171100109 171100361 -71563992 + MIR SINE MIR 11 261 -1 267 315 81 38 chr1 171100419 171100654 -71563699 + L2 LINE L2 3048 3292 -21 293 277 62 0 chr1 171100902 171101014 -71563339 + L3b LINE CR1 1116 1234 -349 255 274 319 19 chr1 171101867 171102024 -71562329 - MIR SINE MIR -3 259 56 468 293 131 35 chr1 171102181 171102410 -71561943 + MIR SINE MIR 5 255 -7 6405 83 13 6 chr1 171102494 171104573 -71559780 + L1PA8 LINE L1 4020 6161 -11 225 0 0 0 chr1 171104573 171104598 -71559755 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 1000 342 56 7 chr1 171106113 171106541 -71557812 - LTR16A LTR ERVL 0 457 1 1615 266 37 7 chr1 171106842 171107358 -71556995 + MER119 DNA MER1_type 2 583 0 278 305 106 89 chr1 171107380 171107838 -71556515 - L2 LINE L2 -337 2977 2508 2454 79 0 0 chr1 171107838 171108141 -71556212 + AluY SINE Alu 1 303 -8 278 305 106 89 chr1 171108141 171108190 -71556163 - L2 LINE L2 -806 2508 2461 527 301 0 0 chr1 171108311 171108424 -71555929 - MER81 DNA DNA 0 114 2 355 278 52 9 chr1 171108425 171108540 -71555813 - MLT1J LTR MaLR -363 148 29 1482 172 12 0 chr1 171109364 171109608 -71554745 + AluJo SINE Alu 2 248 -64 33 43 0 0 chr1 171109643 171109690 -71554663 + AT_rich Low_complexity Low_complexity 1 47 0 425 342 179 29 chr1 171109920 171110446 -71553907 + L2 LINE L2 1328 1932 -1382 613 333 37 9 chr1 171110502 171110718 -71553635 + MIR SINE MIR 35 256 -6 793 262 58 63 chr1 171110745 171111207 -71553146 + LTR40b LTR ERVL 3 462 0 1364 40 29 0 chr1 171111286 171111459 -71552894 - L1PA4 LINE L1 0 6155 5978 3058 74 2 0 chr1 171111459 171111852 -71552501 + L1P LINE L1 41 434 -5712 993 333 137 29 chr1 171111867 171112694 -71551659 + L2 LINE L2 2055 2970 -344 322 307 140 0 chr1 171113109 171113223 -71551130 + L1ME LINE L1 884 1013 -5934 350 287 99 70 chr1 171113739 171114122 -71550231 + L1ME LINE L1 1361 1814 -5133 308 304 52 40 chr1 171114129 171114379 -71549974 + L1ME LINE L1 1829 2081 -4866 251 28 28 0 chr1 171114414 171114450 -71549903 + (CAA)n Simple_repeat Simple_repeat 2 38 0 477 320 156 38 chr1 171114505 171114963 -71549390 + L2 LINE L2 2783 3291 -22 34 24 0 0 chr1 171117432 171117473 -71546880 + AT_rich Low_complexity Low_complexity 1 41 0 271 281 140 39 chr1 171117876 171118211 -71546142 + L1ME LINE L1 5513 5881 -240 1953 146 0 0 chr1 171118943 171119230 -71545123 + AluSx SINE Alu 1 287 -25 26 30 0 0 chr1 171119230 171119263 -71545090 + AT_rich Low_complexity Low_complexity 1 33 0 459 143 38 9 chr1 171120409 171120514 -71543839 + GA-rich Low_complexity Low_complexity 3 110 0 1049 283 82 47 chr1 171120636 171121145 -71543208 + L2 LINE L2 2784 3309 -4 376 339 65 60 chr1 171123953 171124573 -71539780 + L2 LINE L2 2564 3184 -88 216 244 12 23 chr1 171124661 171124747 -71539606 + A-rich Low_complexity Low_complexity 5 89 0 235 0 57 0 chr1 171125591 171125626 -71538727 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 171126901 171126924 -71537429 + AT_rich Low_complexity Low_complexity 1 23 0 418 283 107 44 chr1 171127135 171127294 -71537059 + MLT1J2 LTR MaLR 191 359 -91 2578 207 32 4 chr1 171127301 171127799 -71536554 + LTR53 LTR ERVL 8 519 0 853 66 0 0 chr1 171127807 171127913 -71536440 + AluY SINE Alu 1 106 -205 4393 171 103 94 chr1 171127913 171129654 -71534699 + pTR5 LTR ERV1 73 2429 -9 1328 97 29 38 chr1 171129654 171129892 -71534461 + AluY SINE Alu 65 300 -11 901 104 0 49 chr1 171129912 171130075 -71534278 + L1PA13 LINE L1 6008 6162 -1 21 0 0 0 chr1 171130075 171130096 -71534257 + AT_rich Low_complexity Low_complexity 1 21 0 317 336 24 32 chr1 171130118 171130243 -71534110 + MER5B DNA MER1_type 50 173 -5 2423 74 0 13 chr1 171130582 171130933 -71533420 + AluSc SINE Alu 1 347 0 490 316 37 11 chr1 171131046 171131233 -71533120 - MIR SINE MIR -66 196 5 674 298 28 0 chr1 171132824 171133002 -71531351 + MIR SINE MIR 50 232 -30 683 272 18 59 chr1 171134687 171134959 -71529394 - MIR SINE MIR 0 262 2 1532 139 0 0 chr1 171136099 171136314 -71528039 - AluSg/x SINE Alu -14 296 82 2086 195 49 5 chr1 171139797 171140202 -71524151 + MSTB LTR MaLR 3 425 -1 240 271 0 0 chr1 171140216 171140275 -71524078 + GA-rich Low_complexity Low_complexity 2 60 0 185 234 85 0 chr1 171140907 171140954 -71523399 + L2 LINE L2 3263 3313 0 1064 198 41 25 chr1 171141942 171142185 -71522168 - Tigger5 DNA MER2_type 0 2323 2077 386 213 25 0 chr1 171142171 171142251 -71522102 - Tigger5 DNA MER2_type -2241 82 1 * 603 279 109 48 chr1 171142414 171142790 -71521563 + L1ME2 LINE L1 58 456 -5967 3736 273 66 20 chr1 171142815 171145180 -71519173 + L1ME2 LINE L1 4447 6928 -31 1440 176 77 15 chr1 171145180 171145453 -71518900 + AluJb SINE Alu 1 290 -22 3736 273 66 20 chr1 171145453 171145486 -71518867 + L1ME2 LINE L1 6928 6958 -1 187 314 14 79 chr1 171147247 171147387 -71516966 + MIR SINE MIR 82 212 -50 2662 112 11 47 chr1 171147899 171148439 -71515914 + LTR19C LTR ERV1 1 566 -187 1030 99 7 0 chr1 171148436 171148588 -71515765 + LTR19A LTR ERV1 334 486 0 * 2269 97 0 0 chr1 171148939 171149238 -71515115 - AluY SINE Alu 0 311 13 22 56 0 0 chr1 171149715 171149751 -71514602 + AT_rich Low_complexity Low_complexity 1 36 0 199 325 106 8 chr1 171150106 171150229 -71514124 - MIR SINE MIR -116 146 12 201 167 0 0 chr1 171150378 171150414 -71513939 + T-rich Low_complexity Low_complexity 1 36 0 252 111 0 0 chr1 171150864 171150909 -71513444 + (CA)n Simple_repeat Simple_repeat 2 46 0 1623 201 32 0 chr1 171150911 171151220 -71513133 - MER2 DNA MER2_type 0 345 27 192 143 54 0 chr1 171151225 171151281 -71513072 + (TA)n Simple_repeat Simple_repeat 1 59 0 34 0 0 0 chr1 171151771 171151805 -71512548 + AT_rich Low_complexity Low_complexity 1 34 0 4006 173 31 38 chr1 171151834 171152796 -71511557 - L1MB1 LINE L1 -67 6101 5137 22 0 0 0 chr1 171153166 171153188 -71511165 + AT_rich Low_complexity Low_complexity 1 22 0 2108 181 38 73 chr1 171155599 171156173 -71508180 + MLT2B3 LTR ERVL 1 554 0 204 253 0 0 chr1 171157115 171157190 -71507163 + (TA)n Simple_repeat Simple_repeat 2 76 0 1758 158 27 0 chr1 171158283 171158575 -71505778 - MER89 LTR ERV1 0 559 260 1191 65 0 24 chr1 171158593 171158841 -71505512 + (GAA)n Simple_repeat Simple_repeat 1 242 0 446 191 11 0 chr1 171158904 171158993 -71505360 - MER89 LTR ERV1 -469 90 1 239 149 64 0 chr1 171159059 171159106 -71505247 - L1ME LINE L1 -295 5826 5777 204 143 29 0 chr1 171159110 171159145 -71505208 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 261 269 0 11 chr1 171159255 171159348 -71505005 - L1ME LINE L1 -756 5408 5317 30 0 0 0 chr1 171159682 171159712 -71504641 + AT_rich Low_complexity Low_complexity 1 30 0 528 300 0 28 chr1 171160087 171160267 -71504086 - MER5B DNA MER1_type 0 178 4 180 0 0 0 chr1 171160304 171160324 -71504029 + (TC)n Simple_repeat Simple_repeat 2 21 0 24 67 0 0 chr1 171160413 171160458 -71503895 + AT_rich Low_complexity Low_complexity 1 45 0 39 68 0 0 chr1 171160611 171160685 -71503668 + AT_rich Low_complexity Low_complexity 1 74 0 1322 277 90 35 chr1 171160776 171161288 -71503065 - MLT1F LTR MaLR 0 542 3 2046 101 10 29 chr1 171161493 171161799 -71502554 + AluSg SINE Alu 1 300 -10 191 313 145 12 chr1 171163165 171163248 -71501105 + L2 LINE L2 1419 1512 -1802 196 364 55 0 chr1 171163551 171163606 -71500747 + L3b LINE CR1 1514 1571 -12 27 0 0 0 chr1 171163646 171163673 -71500680 + AT_rich Low_complexity Low_complexity 1 27 0 1424 295 26 3 chr1 171163830 171164213 -71500140 + MLT1H1 LTR MaLR 1 392 -163 1132 58 0 32 chr1 171165121 171165277 -71499076 - L1PA6 LINE L1 -5 6149 5999 297 183 0 0 chr1 171165962 171166022 -71498331 + (CA)n Simple_repeat Simple_repeat 1 60 0 1976 163 10 66 chr1 171166374 171166789 -71497564 + MLT1B LTR MaLR 1 426 -2 2997 177 11 18 chr1 171169966 171170519 -71493834 - MER44D DNA MER2_type -1 604 1 184 339 0 16 chr1 171170541 171170603 -71493750 - MIR3 SINE MIR -27 181 121 270 0 0 0 chr1 171171536 171171566 -71492787 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 6646 228 36 75 chr1 171172112 171172394 -71491959 - L1M1 LINE L1 -4171 2997 2706 1183 123 0 0 chr1 171172394 171172565 -71491788 - AluSp SINE Alu -8 305 135 6646 228 36 75 chr1 171172565 171175391 -71488962 - L1M1 LINE L1 -4462 2706 8 289 183 98 0 chr1 171175391 171175473 -71488880 + LTR33 LTR ERVL 432 521 0 29 28 0 0 chr1 171176793 171176829 -71487524 + AT_rich Low_complexity Low_complexity 1 36 0 3679 114 9 4 chr1 171176860 171177421 -71486932 - L1PA15 LINE L1 0 6165 5602 6596 69 11 0 chr1 171177441 171178629 -71485724 - L1PA7 LINE L1 -2 6152 4954 725 100 0 0 chr1 171178629 171178729 -71485624 - L1PA15 LINE L1 -550 5615 5516 * 14598 216 18 11 chr1 171178717 171182174 -71482179 - L1M LINE L1 -743 5403 1951 215 323 68 36 chr1 171182447 171182613 -71481740 + MIR3 SINE MIR 19 192 -52 582 350 11 0 chr1 171182713 171182899 -71481454 - MIR SINE MIR -49 213 26 381 273 154 21 chr1 171183775 171183918 -71480435 - MIR SINE MIR -93 169 8 1841 244 8 38 chr1 171184264 171184440 -71479913 - L1 LINE L1 -2260 3886 3706 1828 121 4 0 chr1 171184440 171184720 -71479633 - L1PA14 LINE L1 -1 6160 5880 1841 244 8 38 chr1 171184720 171185048 -71479305 - L1 LINE L1 -2440 3706 3397 1008 157 7 0 chr1 171185321 171185474 -71478879 + FRAM SINE Alu 1 153 -23 28 48 0 0 chr1 171185475 171185517 -71478836 + AT_rich Low_complexity Low_complexity 1 42 0 332 297 42 25 chr1 171185773 171185891 -71478462 + L2 LINE L2 3193 3312 -1 253 247 101 22 chr1 171186143 171186232 -71478121 - MIR SINE MIR -76 186 91 22 0 0 0 chr1 171187449 171187471 -71476882 + AT_rich Low_complexity Low_complexity 1 22 0 304 244 0 43 chr1 171187718 171187833 -71476520 + (TA)n Simple_repeat Simple_repeat 1 110 0 228 186 17 34 chr1 171187835 171187894 -71476459 + L1MC4 LINE L1 6652 6709 -1333 1850 240 49 28 chr1 171187894 171188402 -71475951 + LTR40a LTR ERVL 1 519 0 204 67 0 0 chr1 171189379 171189409 -71474944 + (CAA)n Simple_repeat Simple_repeat 2 31 0 636 212 0 8 chr1 171190119 171190251 -71474102 + FLAM_A SINE Alu 12 142 0 26 0 0 0 chr1 171190775 171190801 -71473552 + AT_rich Low_complexity Low_complexity 1 26 0 517 206 0 28 chr1 171191426 171191533 -71472820 + MIR SINE MIR 114 217 -45 585 203 0 16 chr1 171191911 171192039 -71472314 - MLT1D LTR MaLR 0 505 380 4941 89 6 0 chr1 171192041 171192693 -71471660 - PABL_A LTR ERV1 0 660 5 18926 66 13 2 chr1 171192697 171195187 -71469166 - PABL_A-int LTR ERV1 0 5015 2499 910 147 0 0 chr1 171195187 171195330 -71469023 + LTR19B LTR ERV1 1 143 -437 3956 92 49 4 chr1 171195330 171195885 -71468468 + LTR12 LTR ERV1 2 581 -133 2696 131 35 2 chr1 171195885 171196313 -71468040 + LTR19B LTR ERV1 139 580 0 4184 67 40 0 chr1 171196313 171196930 -71467423 - PABL_A-int LTR ERV1 -2512 2503 1862 1007 165 212 0 chr1 171196930 171197142 -71467211 + LTR8 LTR ERV1 1 257 -434 11870 73 30 15 chr1 171197142 171198767 -71465586 - PABL_A-int LTR ERV1 -3366 1649 1 4871 87 6 1 chr1 171198767 171199424 -71464929 - PABL_A LTR ERV1 0 660 1 1525 195 57 24 chr1 171199454 171199787 -71464566 - MLT1D LTR MaLR -159 346 3 214 314 47 23 chr1 171200023 171200119 -71464234 + MIR SINE MIR 61 159 -49 378 255 10 10 chr1 171200402 171200500 -71463853 - MIR SINE MIR -2 260 163 380 251 153 79 chr1 171202042 171202257 -71462096 - MIR SINE MIR -4 258 28 2024 130 37 0 chr1 171203258 171203558 -71460795 + AluSq SINE Alu 1 311 -2 717 308 48 8 chr1 171203743 171203993 -71460360 + MIR SINE MIR 3 262 0 203 263 0 35 chr1 171204509 171204566 -71459787 - MIR3 SINE MIR -7 201 147 464 300 17 88 chr1 171204782 171204926 -71459427 + L2 LINE L2 3013 3127 -186 189 0 0 0 chr1 171204926 171204947 -71459406 + (TTA)n Simple_repeat Simple_repeat 2 22 0 464 300 17 88 chr1 171204947 171205099 -71459254 + L2 LINE L2 3127 3288 -25 351 0 0 0 chr1 171205933 171205972 -71458381 + (TG)n Simple_repeat Simple_repeat 1 39 0 274 347 74 58 chr1 171206421 171206732 -71457621 - L2 LINE L2 -339 2975 2660 185 287 79 30 chr1 171207297 171207398 -71456955 - L2 LINE L2 -423 2891 2786 239 330 53 0 chr1 171207841 171207935 -71456418 - L3 LINE CR1 -119 1458 1360 250 317 99 0 chr1 171208354 171208455 -71455898 - L3 LINE CR1 -701 876 766 272 290 69 15 chr1 171208473 171208604 -71455749 + L3 LINE CR1 902 1039 -538 1037 274 67 49 chr1 171208774 171209223 -71455130 - LTR16A1 LTR ERVL 0 457 1 25 51 0 0 chr1 171209518 171209557 -71454796 + AT_rich Low_complexity Low_complexity 1 39 0 2050 254 67 20 chr1 171209754 171210961 -71453392 - L1MC4 LINE L1 -140 7902 6476 936 258 47 47 chr1 171211931 171212357 -71451996 + L2 LINE L2 2863 3288 -25 2174 107 0 0 chr1 171212874 171213163 -71451190 + AluSg SINE Alu 1 289 -21 28 0 0 0 chr1 171213163 171213191 -71451162 + AT_rich Low_complexity Low_complexity 1 28 0 200 229 0 16 chr1 171213313 171213374 -71450979 + (TA)n Simple_repeat Simple_repeat 1 60 0 27 29 0 0 chr1 171213453 171213487 -71450866 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr1 171213963 171213992 -71450361 + AT_rich Low_complexity Low_complexity 1 29 0 372 244 93 42 chr1 171215455 171215648 -71448705 + MIR SINE MIR 60 262 0 205 380 107 0 chr1 171216870 171216991 -71447362 + L2 LINE L2 3180 3313 0 290 243 81 0 chr1 171217469 171217543 -71446810 + L2 LINE L2 3234 3313 0 185 336 58 67 chr1 171218162 171218266 -71446087 - L2 LINE L2 -16 3256 3154 452 330 21 33 chr1 171218331 171218544 -71445809 - MIR SINE MIR -48 214 2 2401 82 0 19 chr1 171219180 171219497 -71444856 - AluY SINE Alu 0 311 1 276 30 0 0 chr1 171219589 171219622 -71444731 + (CA)n Simple_repeat Simple_repeat 2 34 0 265 330 43 9 chr1 171219864 171219979 -71444374 - MIR SINE MIR -60 202 84 340 315 39 0 chr1 171220106 171220236 -71444117 - L1M4 LINE L1 -1017 5129 4995 288 214 27 27 chr1 171220421 171220533 -71443820 - L1M4 LINE L1 -1419 4727 4616 1097 119 5 5 chr1 171220560 171220745 -71443608 + L1MB3 LINE L1 5996 6180 -3 2331 57 30 3 chr1 171222055 171222355 -71441998 + AluY SINE Alu 1 308 -3 1145 248 44 81 chr1 171223126 171223581 -71440772 + LTR16C LTR ERVL 54 491 0 266 360 79 25 chr1 171223605 171223808 -71440545 - L3 LINE CR1 -71 1506 1293 827 231 109 13 chr1 171225633 171225862 -71438491 + MIR SINE MIR 2 252 -10 292 280 0 21 chr1 171225877 171225970 -71438383 + A-rich Low_complexity Low_complexity 5 95 0 285 381 58 0 chr1 171226077 171226232 -71438121 - L2 LINE L2 -42 3271 3108 367 281 26 9 chr1 171226671 171226785 -71437568 + MIR SINE MIR 99 214 -48 1481 112 0 0 chr1 171227801 171227997 -71436356 - AluSg/x SINE Alu -32 280 85 32 0 0 0 chr1 171228166 171228198 -71436155 + AT_rich Low_complexity Low_complexity 1 32 0 1225 237 70 44 chr1 171228749 171229204 -71435149 + MLT1C LTR MaLR 1 467 0 209 211 18 0 chr1 171229531 171229588 -71434765 + CT-rich Low_complexity Low_complexity 3 60 0 240 169 0 121 chr1 171230991 171231074 -71433279 + L1 LINE L1 4745 4817 -1329 25 51 0 0 chr1 171231207 171231246 -71433107 + AT_rich Low_complexity Low_complexity 1 39 0 5627 153 13 8 chr1 171231290 171233029 -71431324 + L1MA4 LINE L1 4558 6300 0 22 0 0 0 chr1 171233067 171233089 -71431264 + AT_rich Low_complexity Low_complexity 1 22 0 360 288 100 0 chr1 171233534 171233694 -71430659 + L1ME4a LINE L1 5633 5808 -313 23 68 0 0 chr1 171233694 171233738 -71430615 + AT_rich Low_complexity Low_complexity 1 44 0 329 210 12 12 chr1 171233760 171233841 -71430512 + L1ME4a LINE L1 5823 5903 -218 372 43 0 0 chr1 171233854 171233900 -71430453 + (CA)n Simple_repeat Simple_repeat 2 47 0 238 152 43 0 chr1 171233903 171233949 -71430404 + L1ME4a LINE L1 5965 6012 -109 268 304 70 50 chr1 171234263 171234464 -71429889 + L2 LINE L2 2557 2761 -553 237 345 92 42 chr1 171235627 171236291 -71428062 + L2 LINE L2 1241 1937 -1377 431 292 22 7 chr1 171237032 171237169 -71427184 + MIR SINE MIR 90 228 -34 205 326 125 22 chr1 171237230 171237414 -71426939 - MIR SINE MIR -46 216 14 633 326 101 30 chr1 171237448 171237914 -71426439 - L2 LINE L2 -7 3306 2808 26 50 0 0 chr1 171239075 171239115 -71425238 + AT_rich Low_complexity Low_complexity 1 40 0 393 271 172 7 chr1 171239252 171239403 -71424950 - MIR SINE MIR -86 176 1 2304 46 4 4 chr1 171239475 171239807 -71424546 + AluY SINE Alu 3 334 0 2760 163 55 28 chr1 171239930 171240458 -71423895 - MER44D DNA MER2_type -2 603 7 2054 146 54 47 chr1 171240806 171241252 -71423101 - L1MA7 LINE L1 0 6291 5843 415 315 83 33 chr1 171241470 171241651 -71422702 - MIR SINE MIR -51 211 22 383 88 0 0 chr1 171243074 171243131 -71421222 - Alu SINE Alu -2 299 243 747 171 86 17 chr1 171243267 171243442 -71420911 + MER53 DNA DNA 3 189 0 191 333 33 0 chr1 171243655 171243715 -71420638 + MIR3 SINE MIR 9 70 -138 1632 109 143 4 chr1 171245122 171245388 -71418965 - AluSq SINE Alu 0 303 1 1926 159 3 10 chr1 171245480 171245794 -71418559 + AluJb SINE Alu 1 312 0 2362 75 0 26 chr1 171246254 171246559 -71417794 + AluSc SINE Alu 1 297 -12 400 272 207 19 chr1 171247186 171247399 -71416954 + MIR SINE MIR 5 257 -5 209 179 0 0 chr1 171247399 171247438 -71416915 + (CAG)n Simple_repeat Simple_repeat 3 41 0 225 108 0 0 chr1 171247572 171247609 -71416744 + (TG)n Simple_repeat Simple_repeat 2 38 0 3743 77 4 0 chr1 171247700 171248192 -71416161 - L1PA6 LINE L1 -8 6146 5653 219 341 58 14 chr1 171248622 171248760 -71415593 - MIR SINE MIR -56 206 63 5654 156 31 23 chr1 171248760 171249899 -71414454 + L1MC1 LINE L1 5186 6332 -1 32 0 0 0 chr1 171250235 171250267 -71414086 + AT_rich Low_complexity Low_complexity 1 32 0 389 332 35 50 chr1 171250334 171250533 -71413820 + MER91A DNA MER1_type 1 196 0 279 292 83 10 chr1 171250533 171250607 -71413746 + MER91A DNA MER1_type 114 194 -2 203 56 56 0 chr1 171250790 171250826 -71413527 + T-rich Low_complexity Low_complexity 4 41 0 23 33 0 0 chr1 171251678 171251708 -71412645 + AT_rich Low_complexity Low_complexity 1 30 0 1307 204 4 51 chr1 171252277 171252552 -71411801 - AluJb SINE Alu -48 264 3 326 281 123 18 chr1 171252641 171252812 -71411541 + MER97c DNA MER1_type? 893 1081 -9 854 64 58 17 chr1 171252875 171253048 -71411305 + CT-rich Low_complexity Low_complexity 1 180 0 211 182 0 0 chr1 171253746 171253779 -71410574 + polypyrimidine Low_complexity Low_complexity 3 35 0 21 0 0 0 chr1 171254051 171254072 -71410281 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 171254396 171254418 -71409935 + AT_rich Low_complexity Low_complexity 1 22 0 188 256 12 98 chr1 171255783 171255865 -71408488 - L2 LINE L2 -15 3257 3183 758 235 44 64 chr1 171256198 171256449 -71407904 + MIR SINE MIR 9 254 -8 943 300 67 74 chr1 171256485 171257157 -71407196 + L2 LINE L2 2316 2989 -283 640 255 96 59 chr1 171257273 171257595 -71406758 + MER46C DNA MER2_type 4 337 -1 218 374 36 14 chr1 171258311 171258450 -71405903 + L2 LINE L2 2633 2774 -540 21 36 0 0 chr1 171259582 171259610 -71404743 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 171259799 171259820 -71404533 + AT_rich Low_complexity Low_complexity 1 21 0 256 306 138 19 chr1 171260302 171260462 -71403891 - MIR SINE MIR -10 252 74 241 364 40 20 chr1 171260683 171260834 -71403519 + MIR SINE MIR 57 210 -52 977 75 0 22 chr1 171261163 171261297 -71403056 - AluY SINE Alu -12 299 169 1630 165 34 70 chr1 171261468 171261825 -71402528 - MER2 DNA MER2_type 0 344 1 189 0 0 0 chr1 171262780 171262801 -71401552 + (T)n Simple_repeat Simple_repeat 1 21 0 31 58 0 0 chr1 171262963 171263015 -71401338 + AT_rich Low_complexity Low_complexity 1 52 0 279 341 44 52 chr1 171264059 171264194 -71400159 + L2 LINE L2 3119 3252 -20 184 326 34 11 chr1 171264440 171264529 -71399824 - MIR SINE MIR -119 143 53 225 0 0 0 chr1 171265015 171265040 -71399313 + (TC)n Simple_repeat Simple_repeat 2 26 0 209 283 0 0 chr1 171265881 171265934 -71398419 - L2 LINE L2 -41 3231 3179 217 139 83 14 chr1 171266739 171266811 -71397542 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 295 330 117 48 chr1 171266879 171267291 -71397062 + L2 LINE L2 1698 2137 -1177 204 40 0 0 chr1 171267825 171267850 -71396503 + (TA)n Simple_repeat Simple_repeat 2 26 0 286 311 115 40 chr1 171268407 171268558 -71395795 + MIR3 SINE MIR 6 172 -64 21 57 0 0 chr1 171269349 171269384 -71394969 + AT_rich Low_complexity Low_complexity 1 35 0 2235 114 0 16 chr1 171269693 171270010 -71394343 + AluSx SINE Alu 1 312 0 369 0 0 0 chr1 171270735 171270776 -71393577 + (TAA)n Simple_repeat Simple_repeat 1 41 0 201 195 0 0 chr1 171271013 171271054 -71393299 + (TG)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr1 171272172 171272192 -71392161 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 241 119 0 48 chr1 171272194 171272236 -71392117 - AluJb SINE Alu -15 287 248 1261 194 18 54 chr1 171272236 171272514 -71391839 - AluJb SINE Alu -44 268 1 249 316 88 15 chr1 171272516 171272652 -71391701 - MIR SINE MIR -114 148 3 188 198 99 49 chr1 171272669 171272750 -71391603 + MIR SINE MIR 57 141 -67 458 290 90 25 chr1 171272919 171273119 -71391234 - MIR SINE MIR -30 232 20 1246 187 23 53 chr1 171273637 171273936 -71390417 - MLT2D LTR ERVL -2 412 123 503 291 26 7 chr1 171276337 171276488 -71387865 - L2 LINE L2 -2 3311 3158 453 358 29 5 chr1 171277018 171277222 -71387131 - L2 LINE L2 -920 2394 2186 1614 171 71 0 chr1 171277224 171277504 -71386849 - AluJb SINE Alu -8 304 5 859 215 0 6 chr1 171277559 171277722 -71386631 + AluJb SINE Alu 140 301 -11 260 343 134 0 chr1 171277722 171277923 -71386430 - L2 LINE L2 -1147 2167 1940 212 357 88 48 chr1 171277962 171278539 -71385814 - L2 LINE L2 -1496 1818 1219 248 228 53 0 chr1 171279112 171279160 -71385193 + AluSg/x SINE Alu 122 172 -130 1945 189 94 26 chr1 171279160 171279619 -71384734 + LTR2B LTR ERV1 1 490 0 44904 186 6 9 chr1 171279619 171287457 -71376896 + HERVE LTR ERV1 1 7811 -2 1827 198 88 27 chr1 171287459 171287904 -71376449 + LTR2B LTR ERV1 1 472 -18 632 193 8 8 chr1 171287904 171288023 -71376330 + FLAM_C SINE Alu 12 130 -13 883 212 0 0 chr1 171288041 171288221 -71376132 + FRAM SINE Alu 1 45 0 23 78 0 0 chr1 171288536 171288587 -71375766 + AT_rich Low_complexity Low_complexity 1 51 0 363 305 47 16 chr1 171288658 171288848 -71375505 - HAL1b LINE L1 0 1348 1153 235 213 27 27 chr1 171288848 171288923 -71375430 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 294 289 122 6 chr1 171289165 171289345 -71375008 - HAL1b LINE L1 -437 911 711 228 131 49 16 chr1 171289458 171289519 -71374834 - L1MCa LINE L1 -4358 2068 2006 228 239 23 0 chr1 171289474 171289562 -71374791 + L1MC4 LINE L1 6614 6703 -1339 3255 102 30 35 chr1 171289585 171290053 -71374300 + L1MC1 LINE L1 5760 6226 -107 2128 203 19 51 chr1 171290053 171290581 -71373772 + MLT2B2 LTR ERVL 1 511 -4 3255 102 30 35 chr1 171290581 171290678 -71373675 + L1MC1 LINE L1 6226 6322 -11 352 171 26 0 chr1 171291322 171291398 -71372955 - MER103 DNA DNA -81 85 8 199 268 0 18 chr1 171291752 171291808 -71372545 - MIR SINE MIR -105 157 103 29 47 0 0 chr1 171292248 171292291 -71372062 + AT_rich Low_complexity Low_complexity 1 43 0 289 279 0 48 chr1 171292385 171292489 -71371864 + L1ME LINE L1 5571 5669 -452 2336 99 3 0 chr1 171292612 171292915 -71371438 - AluSp SINE Alu -9 304 1 2620 39 0 3 chr1 171293020 171293330 -71371023 + AluY SINE Alu 1 309 -2 329 320 67 26 chr1 171293529 171293723 -71370630 - L1ME3A LINE L1 -286 5884 5683 25 65 0 0 chr1 171293931 171293977 -71370376 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr1 171294242 171294274 -71370079 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 171294878 171294899 -71369454 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 171295203 171295244 -71369109 + AT_rich Low_complexity Low_complexity 1 41 0 186 400 208 0 chr1 171296445 171296565 -71367788 + L2 LINE L2 3125 3269 -3 216 0 0 0 chr1 171296571 171296595 -71367758 + (TG)n Simple_repeat Simple_repeat 1 24 0 216 360 135 6 chr1 171296925 171297103 -71367250 + L3 LINE CR1 1286 1486 -91 2207 112 0 3 chr1 171297139 171297434 -71366919 + AluSq SINE Alu 1 294 -19 3119 118 47 23 chr1 171298350 171298865 -71365488 - MER1A DNA MER1_type 0 527 1 213 359 170 5 chr1 171298902 171299114 -71365239 - L3b LINE CR1 -88 1495 1249 195 129 0 0 chr1 171299376 171299407 -71364946 + (T)n Simple_repeat Simple_repeat 1 31 0 1462 143 31 33 chr1 171299407 171299729 -71364624 - LTR7 LTR ERV1 -38 412 48 1534 105 19 19 chr1 171299730 171299988 -71364365 - HERVH LTR ERV1 -15 7698 7441 1972 181 11 14 chr1 171300004 171300352 -71364001 + MER7A DNA MER2_type 1 345 -1 181 284 88 60 chr1 171300522 171300737 -71363616 - L3b LINE CR1 -179 1404 1184 276 336 150 0 chr1 171300805 171300918 -71363435 - L2 LINE L2 0 3272 3143 693 275 34 34 chr1 171301908 171302141 -71362212 - MIR SINE MIR -3 259 27 956 244 139 58 chr1 171302914 171303382 -71360971 + L2 LINE L2 2808 3313 0 24 32 0 0 chr1 171303632 171303663 -71360690 + AT_rich Low_complexity Low_complexity 1 31 0 381 298 163 52 chr1 171303664 171303916 -71360437 + L2 LINE L2 3034 3313 0 185 171 0 29 chr1 171304168 171304203 -71360150 + MIR3 SINE MIR 121 154 -54 1361 180 0 0 chr1 171304244 171304483 -71359870 + L1PA16 LINE L1 5919 6157 -9 2200 128 0 0 chr1 171304485 171304797 -71359556 + AluSx SINE Alu 1 312 0 373 335 50 19 chr1 171304831 171304992 -71359361 - MIR3 SINE MIR -11 197 32 282 273 0 0 chr1 171306024 171306090 -71358263 - MIR SINE MIR 0 262 197 212 171 66 13 chr1 171306258 171306334 -71358019 + (TA)n Simple_repeat Simple_repeat 1 80 0 509 322 57 17 chr1 171306336 171306513 -71357840 - MIR SINE MIR -65 197 14 357 297 40 0 chr1 171306738 171306839 -71357514 + L2 LINE L2 3168 3272 0 1951 126 40 3 chr1 171308345 171308646 -71355707 - AluSx SINE Alu 0 312 1 6924 123 21 8 chr1 171309663 171311132 -71353221 + L1MA1 LINE L1 4817 6302 0 25 75 0 0 chr1 171311147 171311200 -71353153 + AT_rich Low_complexity Low_complexity 1 53 0 528 214 75 63 chr1 171311283 171311413 -71352940 + MER91B DNA MER1_type 2 136 -54 2232 111 3 0 chr1 171311413 171311720 -71352633 - AluSc SINE Alu -1 308 1 528 214 75 63 chr1 171311720 171311748 -71352605 + MER91B DNA MER1_type 136 162 -28 222 271 68 68 chr1 171311926 171312059 -71352294 + L2 LINE L2 3132 3264 -49 528 316 88 18 chr1 171312154 171312382 -71351971 - MIR SINE MIR 0 262 19 231 259 17 0 chr1 171312454 171312512 -71351841 + GA-rich Low_complexity Low_complexity 3 61 0 270 381 24 24 chr1 171312852 171313020 -71351333 - MER5A DNA MER1_type -10 179 12 317 115 58 0 chr1 171313545 171313597 -71350756 - L2 LINE L2 0 3313 3259 240 286 123 47 chr1 171315195 171315366 -71348987 + MER5A DNA MER1_type 1 184 -5 569 263 21 63 chr1 171315879 171316164 -71348189 - L1M4 LINE L1 -1173 4973 4701 554 274 106 19 chr1 171316301 171316635 -71347718 - L1ME LINE L1 -4923 1147 784 198 0 0 0 chr1 171316997 171317019 -71347334 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1659 167 0 50 chr1 171317382 171317699 -71346654 - AluJb SINE Alu -11 301 1 23 0 0 0 chr1 171317771 171317794 -71346559 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr1 171318085 171318116 -71346237 + AT_rich Low_complexity Low_complexity 1 31 0 188 338 78 7 chr1 171319106 171319248 -71345105 + L2 LINE L2 2218 2369 -945 270 373 89 40 chr1 171319308 171319555 -71344798 + L2 LINE L2 2376 2634 -680 343 286 150 0 chr1 171320139 171320272 -71344081 - MIR SINE MIR -88 174 22 219 402 41 0 chr1 171320308 171320405 -71343948 + L2 LINE L2 3137 3237 -35 22 0 0 0 chr1 171320638 171320660 -71343693 + AT_rich Low_complexity Low_complexity 1 22 0 547 243 216 11 chr1 171321675 171321856 -71342497 - MER20 DNA MER1_type -1 218 1 1412 40 17 0 chr1 171322274 171322448 -71341905 + L1PA5 LINE L1 5972 6148 -6 219 106 21 21 chr1 171322457 171322504 -71341849 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 729 253 67 6 chr1 171322633 171322811 -71341542 - MIR SINE MIR -71 191 3 22 70 0 0 chr1 171323087 171323130 -71341223 + AT_rich Low_complexity Low_complexity 1 43 0 23 78 0 0 chr1 171323239 171323290 -71341063 + AT_rich Low_complexity Low_complexity 1 51 0 216 227 17 0 chr1 171323930 171324106 -71340247 + (TA)n Simple_repeat Simple_repeat 2 180 0 269 171 29 0 chr1 171324122 171324192 -71340161 + (TA)n Simple_repeat Simple_repeat 2 73 0 258 32 0 0 chr1 171324557 171324588 -71339765 + (T)n Simple_repeat Simple_repeat 1 31 0 330 229 307 7 chr1 171324947 171325087 -71339266 - MIR SINE MIR 0 262 81 188 233 0 0 chr1 171326534 171326577 -71337776 + MIR SINE MIR 13 55 -207 376 287 220 7 chr1 171327154 171327304 -71337049 + MER5A DNA MER1_type 8 189 0 210 306 50 44 chr1 171330187 171330347 -71334006 + L2 LINE L2 496 656 -2658 213 299 26 13 chr1 171330356 171330433 -71333920 + L2 LINE L2 1632 1709 -1605 310 328 121 23 chr1 171330442 171330819 -71333534 + L2 LINE L2 2645 3066 -206 7357 226 26 23 chr1 171333038 171333916 -71330437 + L1M4 LINE L1 2922 3796 -2350 2097 107 10 13 chr1 171333916 171334225 -71330128 + AluSx SINE Alu 1 308 -4 7357 226 26 23 chr1 171334225 171335228 -71329125 + L1M4 LINE L1 3796 4811 -1335 180 77 0 0 chr1 171335228 171335254 -71329099 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 7357 226 26 23 chr1 171335254 171335397 -71328956 + L1M4 LINE L1 4811 4952 -1194 421 314 111 10 chr1 171335734 171335941 -71328412 - MIR SINE MIR -13 249 22 190 56 56 0 chr1 171337174 171337210 -71327143 + (TA)n Simple_repeat Simple_repeat 2 39 0 1238 176 132 37 chr1 171337210 171337483 -71326870 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 171337491 171337512 -71326841 + AT_rich Low_complexity Low_complexity 1 21 0 5542 150 37 17 chr1 171337585 171337613 -71326740 + L1MA6 LINE L1 5258 5284 -1016 254 29 29 0 chr1 171337613 171337648 -71326705 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5542 150 37 17 chr1 171337648 171338229 -71326124 + L1MA6 LINE L1 5284 5899 -401 2057 106 7 16 chr1 171338229 171338532 -71325821 + AluSq SINE Alu 1 300 -13 5542 150 37 17 chr1 171338532 171338943 -71325410 + L1MA6 LINE L1 5899 6300 0 749 184 8 0 chr1 171339061 171339186 -71325167 + FLAM_A SINE Alu 2 127 -6 1962 128 14 3 chr1 171339782 171340070 -71324283 + AluSx SINE Alu 1 291 -21 258 301 62 0 chr1 171340118 171340231 -71324122 + MIR SINE MIR 97 216 -46 42 57 0 0 chr1 171340276 171340346 -71324007 + AT_rich Low_complexity Low_complexity 1 70 0 1587 237 90 10 chr1 171341629 171342039 -71322314 + MLT2B1 LTR ERVL 1 443 -77 206 157 59 0 chr1 171342039 171342090 -71322263 + (TTAA)n Simple_repeat Simple_repeat 4 57 0 229 119 95 0 chr1 171342141 171342183 -71322170 + MLT2B1 LTR ERVL 470 515 0 205 345 57 57 chr1 171342401 171342590 -71321763 - MIR3 SINE MIR -62 146 8 261 57 0 0 chr1 171343353 171343388 -71320965 + (CA)n Simple_repeat Simple_repeat 2 36 0 6678 64 9 9 chr1 171343710 171344684 -71319669 + L1PA6 LINE L1 5174 6147 -7 25 0 0 0 chr1 171344693 171344718 -71319635 + AT_rich Low_complexity Low_complexity 1 25 0 457 73 46 61 chr1 171344718 171344980 -71319373 + (TTATA)n Simple_repeat Simple_repeat 1 258 0 26 30 0 0 chr1 171344980 171345013 -71319340 + AT_rich Low_complexity Low_complexity 1 33 0 256 114 34 23 chr1 171345114 171345202 -71319151 + (TTATA)n Simple_repeat Simple_repeat 5 93 0 377 339 16 37 chr1 171345340 171345529 -71318824 + L2 LINE L2 2869 3053 -219 21 36 0 0 chr1 171345627 171345655 -71318698 + AT_rich Low_complexity Low_complexity 1 28 0 1388 162 0 9 chr1 171345672 171345900 -71318453 + AluSg/x SINE Alu 71 296 -16 632 223 35 150 chr1 171345900 171346527 -71317826 + L1ME3 LINE L1 4343 4897 -1249 868 219 122 10 chr1 171346537 171346891 -71317462 + L1ME3 LINE L1 5756 6333 -1 21 0 0 0 chr1 171347157 171347178 -71317175 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 171349016 171349040 -71315313 + AT_rich Low_complexity Low_complexity 1 24 0 1074 213 34 86 chr1 171349498 171349883 -71314470 + MLT1A1 LTR MaLR 1 365 0 610 249 189 34 chr1 171349939 171350204 -71314149 + L2 LINE L2 3008 3313 0 186 313 0 60 chr1 171351422 171351489 -71312864 - L2 LINE L2 -25 3247 3185 272 260 104 0 chr1 171351695 171351772 -71312581 - L2 LINE L2 -1 3312 3228 449 226 143 52 chr1 171351997 171352227 -71312126 + MER112 DNA MER1_type 3 253 -7 285 235 51 51 chr1 171352264 171352362 -71311991 + L2 LINE L2 2836 2933 -339 397 274 29 96 chr1 171352383 171352804 -71311549 - L2 LINE L2 0 3313 2789 434 411 7 20 chr1 171352812 171353104 -71311249 + L2 LINE L2 2985 3272 0 324 70 0 0 chr1 171353528 171353571 -71310782 + (TG)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chr1 171354906 171354936 -71309417 + (CA)n Simple_repeat Simple_repeat 2 31 0 29 84 0 0 chr1 171355136 171355207 -71309146 + AT_rich Low_complexity Low_complexity 1 71 0 592 261 91 30 chr1 171355285 171355657 -71308696 + L1MEc LINE L1 1920 2314 -4082 886 194 66 0 chr1 171355670 171355866 -71308487 + L1MD3 LINE L1 7787 7995 0 24 0 0 0 chr1 171355888 171355912 -71308441 + AT_rich Low_complexity Low_complexity 1 24 0 388 294 142 15 chr1 171356773 171356977 -71307376 + MIR SINE MIR 33 262 0 1776 140 18 0 chr1 171357059 171357344 -71307009 - AluSx SINE Alu 0 312 23 350 132 0 0 chr1 171357358 171357411 -71306942 - Alu SINE Alu -248 53 1 1264 39 0 0 chr1 171357499 171357654 -71306699 - L1PA4 LINE L1 -5 6150 5996 572 39 2 11 chr1 171357654 171357745 -71306608 + L1P2 LINE L1 5593 5684 -470 386 321 93 12 chr1 171359027 171359189 -71305164 - MIR SINE MIR -6 256 82 1866 176 33 41 chr1 171359429 171359822 -71304531 - MLT1B LTR MaLR 0 390 1 2072 127 3 3 chr1 171359951 171360250 -71304103 + AluSx SINE Alu 1 299 -13 254 328 67 8 chr1 171360704 171360823 -71303530 - MIR SINE MIR -64 144 19 22 35 0 0 chr1 171360896 171360925 -71303428 + AT_rich Low_complexity Low_complexity 1 29 0 685 173 16 16 chr1 171362021 171362148 -71302205 - Charlie4 DNA MER1_type -2 1959 1833 1082 136 17 34 chr1 171362152 171362328 -71302025 + AluSg/x SINE Alu 138 310 -2 21 36 0 0 chr1 171363203 171363231 -71301122 + AT_rich Low_complexity Low_complexity 1 28 0 307 303 49 31 chr1 171363256 171363418 -71300935 + L3b LINE CR1 1239 1403 -180 207 148 56 19 chr1 171363889 171363943 -71300410 + T-rich Low_complexity Low_complexity 5 60 0 909 342 84 42 chr1 171364009 171364527 -71299826 + L2 LINE L2 1109 1604 -1710 2464 53 0 25 chr1 171364527 171364846 -71299507 - AluY SINE Alu 0 311 1 909 342 84 42 chr1 171364846 171365297 -71299056 + L2 LINE L2 1604 2119 -1195 22 56 0 0 chr1 171365962 171365998 -71298355 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr1 171367568 171367610 -71296743 + AT_rich Low_complexity Low_complexity 1 42 0 242 265 20 51 chr1 171367917 171368015 -71296338 + MIR SINE MIR 104 198 -64 1244 186 70 46 chr1 171368885 171369170 -71295183 - AluJo SINE Alu -20 292 1 437 218 9 9 chr1 171369475 171369585 -71294768 - Charlie1 DNA MER1_type -31 2730 2621 254 227 165 0 chr1 171369593 171369690 -71294663 + L1ME4a LINE L1 5338 5450 -712 244 374 0 0 chr1 171369891 171369982 -71294371 - MIR SINE MIR -106 156 66 288 291 15 0 chr1 171369994 171370128 -71294225 + L1ME4a LINE L1 5621 5756 -365 226 340 107 0 chr1 171370207 171370310 -71294043 + L2 LINE L2 3200 3313 0 276 230 35 23 chr1 171370371 171370458 -71293895 + L1ME4a LINE L1 5881 5968 -153 236 217 0 0 chr1 171370493 171370539 -71293814 + L2 LINE L2 3268 3313 0 199 387 0 0 chr1 171370838 171370900 -71293453 - MIR SINE MIR -111 97 36 228 261 0 31 chr1 171371162 171371227 -71293126 + Charlie4 DNA MER1_type 1883 1945 -16 753 63 39 0 chr1 171371229 171371356 -71292997 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 2344 91 0 0 chr1 171371661 171371968 -71292385 - AluSq SINE Alu -6 307 1 299 24 0 24 chr1 171373561 171373602 -71290751 + (TG)n Simple_repeat Simple_repeat 1 40 0 2659 39 0 3 chr1 171374326 171374659 -71289694 + AluY SINE Alu 1 332 0 6566 47 1 0 chr1 171375733 171376537 -71287816 - L1PA6 LINE L1 0 6154 5350 236 128 0 0 chr1 171379150 171379189 -71285164 + MLT2B2 LTR ERVL 437 475 -40 180 176 0 0 chr1 171379223 171379257 -71285096 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 325 132 0 0 chr1 171379265 171379321 -71285032 + MLT2B1 LTR ERVL 389 520 0 26 50 0 0 chr1 171380806 171380846 -71283507 + AT_rich Low_complexity Low_complexity 1 40 0 228 203 40 40 chr1 171381345 171381419 -71282934 - L1ME4a LINE L1 -62 6059 5986 22 0 0 0 chr1 171381420 171381442 -71282911 + AT_rich Low_complexity Low_complexity 1 22 0 320 297 35 7 chr1 171381539 171381684 -71282669 - L1ME4a LINE L1 -301 5820 5672 2372 91 7 0 chr1 171381709 171382017 -71282336 + AluSg SINE Alu 1 310 0 213 349 184 7 chr1 171382231 171382383 -71281970 - MIR SINE MIR -59 203 25 318 26 0 0 chr1 171383783 171383822 -71280531 + (CA)n Simple_repeat Simple_repeat 1 39 0 338 326 120 65 chr1 171383989 171384421 -71279932 + L2 LINE L2 2858 3313 0 180 217 0 0 chr1 171385042 171385088 -71279265 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 183 298 26 61 chr1 171385183 171385297 -71279056 - MIR3 SINE MIR -3 205 96 248 338 34 22 chr1 171385839 171386040 -71278313 + MIR SINE MIR 10 212 -50 305 333 35 9 chr1 171386149 171386263 -71278090 - L2 LINE L2 0 3272 3156 393 294 122 93 chr1 171386747 171387189 -71277164 + L2 LINE L2 2858 3312 -1 30 27 0 0 chr1 171387462 171387499 -71276854 + AT_rich Low_complexity Low_complexity 1 37 0 518 313 218 23 chr1 171387540 171388169 -71276184 + L2 LINE L2 1925 2430 -884 2184 114 0 10 chr1 171388169 171388477 -71275876 - AluSg SINE Alu -3 307 3 518 313 218 23 chr1 171388477 171388489 -71275864 + L2 LINE L2 2430 2438 -876 252 0 0 0 chr1 171388489 171388517 -71275836 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 518 313 218 23 chr1 171388517 171388644 -71275709 + L2 LINE L2 2438 2844 -470 270 397 38 55 chr1 171388691 171388981 -71275372 + L2 LINE L2 2930 3214 -58 183 100 0 0 chr1 171388999 171389029 -71275324 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 239 341 53 15 chr1 171390145 171390277 -71274076 + MIR SINE MIR 15 151 -111 745 144 8 0 chr1 171391326 171391451 -71272902 + AluSp/q SINE Alu 184 309 -4 31 68 0 0 chr1 171391608 171391667 -71272686 + AT_rich Low_complexity Low_complexity 1 59 0 2273 100 0 7 chr1 171391822 171392121 -71272232 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr1 171392272 171392294 -71272059 + AT_rich Low_complexity Low_complexity 1 22 0 1789 176 91 0 chr1 171392682 171393046 -71271307 + MSTA LTR MaLR 1 397 -31 288 284 11 11 chr1 171393152 171393240 -71271113 + MIR SINE MIR 47 134 -128 1174 162 23 19 chr1 171393683 171393899 -71270454 + MLT1A1 LTR MaLR 2 218 -147 529 201 83 25 chr1 171394207 171394411 -71269942 + L1ME LINE L1 5258 5473 -691 316 263 50 0 chr1 171394631 171394711 -71269642 + L2 LINE L2 3223 3306 -7 227 298 71 24 chr1 171395126 171395210 -71269143 + MIR SINE MIR 66 153 -55 305 365 115 38 chr1 171395577 171395865 -71268488 + L2 LINE L2 2962 3271 -1 27 0 0 0 chr1 171396903 171396930 -71267423 + AT_rich Low_complexity Low_complexity 1 27 0 30007 110 11 47 chr1 171397190 171401182 -71263171 - L1PA7 LINE L1 -5 6149 2011 2042 150 14 38 chr1 171401182 171401609 -71262744 - L1MA9 LINE L1 0 6312 5896 30007 110 11 47 chr1 171401609 171401954 -71262399 - L1PA7 LINE L1 -4143 2011 1655 2273 110 0 0 chr1 171401954 171402254 -71262099 + AluY SINE Alu 1 300 -11 30007 110 11 47 chr1 171402254 171404294 -71260059 - L1PA7 LINE L1 -4499 1655 12 13365 131 20 38 chr1 171406449 171408850 -71255503 - Tigger1 DNA MER2_type -36 2382 24 190 369 165 0 chr1 171410424 171410527 -71253826 + L2 LINE L2 3148 3267 -5 195 129 0 0 chr1 171410533 171410564 -71253789 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 24 67 0 0 chr1 171410987 171411032 -71253321 + AT_rich Low_complexity Low_complexity 1 45 0 768 155 0 0 chr1 171411077 171411193 -71253160 + FLAM_C SINE Alu 1 116 -17 384 71 0 0 chr1 171411193 171411249 -71253104 + (TC)n Simple_repeat Simple_repeat 2 57 0 193 104 30 45 chr1 171411254 171411321 -71253032 + (TA)n Simple_repeat Simple_repeat 1 66 0 323 329 170 7 chr1 171411834 171412245 -71252108 + L2 LINE L2 1546 2023 -1291 677 235 63 63 chr1 171412520 171412741 -71251612 + MIR SINE MIR 2 222 -40 268 245 150 70 chr1 171412788 171412938 -71251415 + MLT1L LTR MaLR 399 570 -45 1674 179 10 20 chr1 171412938 171413234 -71251119 - AluJb SINE Alu -17 295 3 268 245 150 70 chr1 171413234 171413283 -71251070 + MLT1L LTR MaLR 570 614 -1 540 335 50 42 chr1 171413377 171413735 -71250618 + L2 LINE L2 2156 2516 -798 2909 289 60 14 chr1 171413742 171414715 -71249638 - L2 LINE L2 -407 2907 1891 278 229 237 8 chr1 171414865 171414983 -71249370 + L2 LINE L2 3164 3308 -5 23 33 0 0 chr1 171415894 171415924 -71248429 + AT_rich Low_complexity Low_complexity 1 30 0 239 269 30 0 chr1 171416645 171416712 -71247641 + MLT1F1 LTR MaLR 68 136 -431 2209 196 47 33 chr1 171416715 171416902 -71247451 + L1MD3 LINE L1 7416 7599 -396 2225 114 7 0 chr1 171416902 171417210 -71247143 + AluY SINE Alu 1 310 -1 2209 196 47 33 chr1 171417210 171417594 -71246759 + L1MD3 LINE L1 7599 7995 0 822 163 59 0 chr1 171417996 171418149 -71246204 - Tigger2 DNA MER2_type -14 2704 2543 1329 108 88 8 chr1 171418402 171418653 -71245700 - Tigger2 DNA MER2_type -175 2543 2273 388 176 15 0 chr1 171418643 171418711 -71245642 - Tigger2 DNA MER2_type -2649 69 1 * 195 353 29 22 chr1 171419744 171419883 -71244470 + MIR SINE MIR 82 221 -41 2269 132 19 22 chr1 171419893 171420258 -71244095 + THE1B LTR MaLR 1 364 0 11214 102 13 8 chr1 171420258 171421830 -71242523 + THE1B-int LTR MaLR 1 1580 0 1959 168 31 11 chr1 171421830 171422187 -71242166 + THE1B LTR MaLR 1 364 0 644 225 88 6 chr1 171424046 171424206 -71240147 - MER5B DNA MER1_type 0 178 6 256 311 91 15 chr1 171424271 171424403 -71239950 - L2 LINE L2 -4 3309 3168 373 341 18 77 chr1 171424510 171424680 -71239673 + MER5B DNA MER1_type 1 160 -18 842 191 118 29 chr1 171424910 171425156 -71239197 - ORSL DNA AcHobo -7 268 1 197 375 25 0 chr1 171425645 171425725 -71238628 + L2 LINE L2 3184 3265 -7 211 311 8 68 chr1 171427107 171427239 -71237114 - MIR3 SINE MIR 0 208 85 590 282 153 14 chr1 171427263 171427479 -71236874 + MIR SINE MIR 13 258 -4 466 277 99 30 chr1 171428099 171428301 -71236052 - LTR33 LTR ERVL -2 519 304 279 294 28 9 chr1 171428858 171428967 -71235386 - ERVL LTR ERVL -483 5281 5171 933 274 15 8 chr1 171429241 171429500 -71234853 - ERVL LTR ERVL -1318 4336 4076 523 308 30 0 chr1 171429683 171429852 -71234501 - LTR33 LTR ERVL -324 197 24 338 346 8 0 chr1 171430079 171430209 -71234144 + MIR SINE MIR 23 153 -109 1756 175 0 16 chr1 171430418 171430727 -71233626 + AluJb SINE Alu 1 304 -8 636 286 78 60 chr1 171431213 171432008 -71232345 + L1MEc LINE L1 1557 2365 -4031 5165 25 2 0 chr1 171432504 171433108 -71231245 + L1PA4 LINE L1 5546 6150 -5 195 42 0 0 chr1 171433170 171433194 -71231159 + (A)n Simple_repeat Simple_repeat 1 24 0 485 286 80 9 chr1 171433806 171434030 -71230323 - MLT1J1 LTR MaLR -2 444 205 614 261 35 50 chr1 171436900 171437160 -71227193 + L1ME1 LINE L1 5906 6161 -5 1008 229 101 86 chr1 171437165 171437715 -71226638 + L2 LINE L2 2738 3313 0 362 229 38 168 chr1 171438062 171438407 -71225946 - L2 LINE L2 -4 3268 2969 565 236 0 21 chr1 171438493 171438685 -71225668 + MER20 DNA MER1_type 1 218 -1 256 320 13 0 chr1 171439208 171439286 -71225067 - MIR3 SINE MIR -53 155 77 279 196 65 0 chr1 171439581 171439652 -71224701 + MIR SINE MIR 81 156 -52 686 303 40 13 chr1 171440688 171440916 -71223437 + MIR SINE MIR 13 246 -16 270 309 71 16 chr1 171440995 171441121 -71223232 + MIR SINE MIR 8 140 -122 202 362 0 0 chr1 171441277 171441346 -71223007 + L2 LINE L2 3185 3253 -19 888 136 0 0 chr1 171441432 171441564 -71222789 + FLAM_C SINE Alu 2 133 0 942 317 129 52 chr1 171442552 171443991 -71220362 + L2 LINE L2 785 2349 -965 1540 179 27 82 chr1 171443991 171444404 -71219949 - MLT1B LTR MaLR 0 390 1 942 317 129 52 chr1 171444404 171444480 -71219873 + L2 LINE L2 2349 2418 -896 371 270 282 0 chr1 171444486 171444660 -71219693 + MIR SINE MIR 1 223 -39 2188 136 0 0 chr1 171444919 171445228 -71219125 + AluSx SINE Alu 4 312 0 249 375 141 17 chr1 171445243 171445534 -71218819 + L2 LINE L2 2619 2945 -369 2049 150 0 0 chr1 171445892 171446186 -71218167 - AluSx SINE Alu -18 294 1 1026 111 0 0 chr1 171446186 171446321 -71218032 - AluSq/x SINE Alu -177 135 1 2160 98 0 26 chr1 171446416 171446722 -71217631 + AluSq SINE Alu 1 298 -15 21 36 0 0 chr1 171447403 171447431 -71216922 + AT_rich Low_complexity Low_complexity 1 28 0 206 375 84 25 chr1 171447970 171448255 -71216098 + L2 LINE L2 1698 1999 -1315 359 352 7 7 chr1 171448954 171449096 -71215257 + L2 LINE L2 2234 2375 -939 25 0 0 0 chr1 171449141 171449166 -71215187 + AT_rich Low_complexity Low_complexity 1 25 0 203 286 0 0 chr1 171449176 171449232 -71215121 + (TA)n Simple_repeat Simple_repeat 2 57 0 362 291 24 16 chr1 171449364 171449491 -71214862 + L1MEd LINE L1 239 366 -5753 237 285 33 51 chr1 171449856 171450030 -71214323 - MLT1I LTR MaLR -251 158 1 217 335 101 19 chr1 171450038 171450196 -71214157 + L2 LINE L2 2494 2664 -650 1095 91 55 12 chr1 171451430 171451595 -71212758 + AluSg/x SINE Alu 132 303 -9 666 254 35 20 chr1 171451755 171451952 -71212401 + MIR SINE MIR 21 220 -42 22 35 0 0 chr1 171452132 171452161 -71212192 + AT_rich Low_complexity Low_complexity 1 29 0 1357 244 5 46 chr1 171452473 171452863 -71211490 - MLT1A2 LTR MaLR 0 374 1 243 251 251 65 chr1 171453129 171453408 -71210945 + L2 LINE L2 2810 3140 -173 262 132 0 0 chr1 171453431 171453469 -71210884 - MER39 LTR ERV1 -669 38 1 3039 191 61 8 chr1 171453484 171453977 -71210376 + MER39 LTR ERV1 37 573 -134 2420 68 3 0 chr1 171453977 171454273 -71210080 + AluSp SINE Alu 1 297 -16 3039 191 61 8 chr1 171454273 171454416 -71209937 + MER39 LTR ERV1 573 707 0 447 224 103 51 chr1 171454422 171454578 -71209775 + L2 LINE L2 3146 3309 -4 21 0 0 0 chr1 171454883 171454904 -71209449 + AT_rich Low_complexity Low_complexity 1 21 0 463 274 67 7 chr1 171456851 171456986 -71207367 - MIR3 SINE MIR -24 184 42 205 248 59 89 chr1 171457126 171457227 -71207126 + MIR SINE MIR 16 113 -149 216 376 6 39 chr1 171458048 171458229 -71206124 + L2 LINE L2 1838 2012 -1302 22 35 0 0 chr1 171458497 171458526 -71205827 + AT_rich Low_complexity Low_complexity 1 29 0 834 225 0 12 chr1 171458552 171458725 -71205628 - AluJo SINE Alu -141 171 1 954 248 61 63 chr1 171458792 171459365 -71204988 + L1M4 LINE L1 2292 2863 -3283 766 236 135 77 chr1 171459453 171460363 -71203990 + L1M4 LINE L1 2841 3803 -2343 367 291 128 27 chr1 171460485 171460859 -71203494 - L1ME LINE L1 -445 5676 5265 1982 141 0 7 chr1 171460914 171461212 -71203141 - AluSx SINE Alu -16 296 1 278 50 25 0 chr1 171461875 171461915 -71202438 + (TG)n Simple_repeat Simple_repeat 2 42 0 1084 258 123 5 chr1 171462133 171462582 -71201771 + L1ME2 LINE L1 3598 4099 -2047 * 5478 141 74 23 chr1 171462579 171462651 -71201702 - L1MC1 LINE L1 0 6333 6266 2393 69 0 3 chr1 171462651 171462956 -71201397 + AluY SINE Alu 1 304 -7 5478 141 74 23 chr1 171462956 171463976 -71200377 - L1MC1 LINE L1 -67 6266 5189 1667 243 47 29 chr1 171463987 171464583 -71199770 + L1ME2 LINE L1 4095 4701 -1445 1832 249 43 36 chr1 171464593 171464935 -71199418 + L1ME2 LINE L1 4901 5239 -925 2517 68 0 0 chr1 171464935 171465245 -71199108 + AluY SINE Alu 1 310 -1 1832 249 43 36 chr1 171465245 171465841 -71198512 + L1ME2 LINE L1 5239 5848 -316 604 249 68 19 chr1 171465877 171466082 -71198271 + L1ME2 LINE L1 5919 6133 -31 5033 164 24 3 chr1 171467605 171468537 -71195816 - L1MB7 LINE L1 -8 6176 5225 281 219 31 0 chr1 171469027 171469091 -71195262 - LTR67 LTR ERVL -8 549 484 281 219 31 0 chr1 171469522 171469586 -71194767 - LTR67 LTR ERVL -8 549 484 248 192 0 0 chr1 171469786 171469838 -71194515 - MLT2B3 LTR ERVL 0 554 503 474 18 0 0 chr1 171469885 171469940 -71194413 + (AATAG)n Simple_repeat Simple_repeat 3 57 0 2233 234 34 20 chr1 171469941 171470437 -71193916 - MLT2B3 LTR ERVL -49 505 3 209 209 0 0 chr1 171470813 171470856 -71193497 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 583 349 132 32 chr1 171470857 171471741 -71192612 - L2 LINE L2 -4 3309 2325 222 289 48 0 chr1 171471750 171471833 -71192520 + L2 LINE L2 2332 2418 -896 184 238 0 24 chr1 171471898 171471940 -71192413 - L2 LINE L2 -345 2969 2929 241 88 0 0 chr1 171472046 171472080 -71192273 + MLT2B2 LTR ERVL 426 459 -56 251 54 27 0 chr1 171472082 171472119 -71192234 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 201 269 0 19 chr1 171474291 171474343 -71190010 + CT-rich Low_complexity Low_complexity 5 55 0 258 32 0 0 chr1 171475469 171475500 -71188853 + (TC)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr1 171475499 171475522 -71188831 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 31 58 0 0 chr1 171475593 171475645 -71188708 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr1 171476021 171476044 -71188309 + (A)n Simple_repeat Simple_repeat 1 23 0 363 96 0 0 chr1 171477837 171477889 -71186464 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 183 42 0 0 chr1 171478790 171478814 -71185539 + (TA)n Simple_repeat Simple_repeat 2 25 0 1248 97 136 19 chr1 171478921 171479127 -71185226 + MER30 DNA MER1_type 1 230 0 666 190 8 0 chr1 171479512 171479633 -71184720 - FRAM SINE Alu -47 129 8 4650 195 55 97 chr1 171481185 171481423 -71182930 + Charlie1a DNA MER1_type 1 248 -2513 1108 160 164 52 chr1 171481423 171481691 -71182662 + AluJo SINE Alu 2 299 -3 4650 195 55 97 chr1 171481691 171482323 -71182030 + Charlie1a DNA MER1_type 248 782 -1979 7592 27 2 2 chr1 171482323 171483638 -71180715 - L1PA4 LINE L1 -3 6152 4838 4650 195 55 97 chr1 171483638 171484277 -71180076 + Charlie1a DNA MER1_type 782 1447 -8 1385 161 70 4 chr1 171484734 171484976 -71179377 - MER2 DNA MER2_type -87 258 1 2615 229 10 2 chr1 171484982 171485493 -71178860 - MLT2B3 LTR ERVL -39 515 1 1021 188 153 46 chr1 171485515 171485776 -71178577 + AluJo SINE Alu 1 289 -13 26 0 0 0 chr1 171485781 171485807 -71178546 + AT_rich Low_complexity Low_complexity 1 26 0 189 171 0 0 chr1 171485827 171485862 -71178491 + (TG)n Simple_repeat Simple_repeat 2 36 0 294 373 27 53 chr1 171487478 171487628 -71176725 - L2 LINE L2 -9 3263 3118 2223 91 0 13 chr1 171488581 171488879 -71175474 + AluSx SINE Alu 1 294 -18 28 0 0 0 chr1 171488879 171488907 -71175446 + AT_rich Low_complexity Low_complexity 1 28 0 1755 199 89 21 chr1 171489164 171489601 -71174752 - MLT1C LTR MaLR 0 467 1 1651 186 53 51 chr1 171489715 171490099 -71174254 + L1ME2 LINE L1 5648 6035 -129 1412 204 5 91 chr1 171490099 171490496 -71173857 + MLT1A1 LTR MaLR 1 363 -2 1651 186 53 51 chr1 171490496 171490617 -71173736 + L1ME2 LINE L1 6035 6154 -10 436 210 34 107 chr1 171490661 171490894 -71173459 + L1MC4 LINE L1 7826 8041 -1 2117 192 31 73 chr1 171491270 171491749 -71172604 + MLT2B2 LTR ERVL 1 459 -56 1853 86 22 30 chr1 171491751 171492018 -71172335 + AluSc SINE Alu 2 266 -43 48 32 0 0 chr1 171492018 171492080 -71172273 + AT_rich Low_complexity Low_complexity 1 62 0 637 312 55 45 chr1 171492139 171492536 -71171817 + LTR67 LTR ERVL 157 557 0 2244 123 0 0 chr1 171492555 171492865 -71171488 + AluSx SINE Alu 3 312 0 2373 70 0 0 chr1 171492952 171493250 -71171103 + AluY SINE Alu 1 298 -13 434 310 107 42 chr1 171493261 171494058 -71170295 + L1MC4a LINE L1 3759 4664 -1482 1678 148 40 4 chr1 171494058 171494336 -71170017 - AluJo SINE Alu -21 291 4 434 310 107 42 chr1 171494336 171494759 -71169594 + L1MC4a LINE L1 4664 5058 -1088 306 262 12 0 chr1 171494854 171494938 -71169415 + (TA)n Simple_repeat Simple_repeat 2 86 0 200 35 35 0 chr1 171494949 171494978 -71169375 + (GA)n Simple_repeat Simple_repeat 2 31 0 249 308 58 43 chr1 171495278 171495437 -71168916 - LTR16A LTR ERVL -6 444 276 228 279 23 12 chr1 171495424 171495510 -71168843 - LTR16A1 LTR ERVL -370 87 1 * 189 0 0 0 chr1 171495594 171495615 -71168738 + (TG)n Simple_repeat Simple_repeat 1 21 0 200 309 0 75 chr1 171495652 171495746 -71168607 + L2 LINE L2 3227 3313 0 24 53 0 0 chr1 171495761 171495799 -71168554 + AT_rich Low_complexity Low_complexity 1 38 0 547 317 46 12 chr1 171495804 171496129 -71168224 + L1MC4a LINE L1 5575 5910 -1898 224 290 65 32 chr1 171496373 171496497 -71167856 - MIR SINE MIR -63 145 18 749 279 36 16 chr1 171496917 171497168 -71167185 + MIR SINE MIR 7 262 0 2028 122 10 10 chr1 171497279 171497582 -71166771 + AluSx SINE Alu 1 303 -9 408 195 26 0 chr1 171498067 171498144 -71166209 + MER69 DNA AcHobo 15 93 -1133 365 232 30 10 chr1 171498155 171498254 -71166099 + MER69 DNA AcHobo 1945 2045 -481 1081 213 114 30 chr1 171498347 171498605 -71165748 + MER69 DNA AcHobo 2076 2382 -144 2370 86 80 0 chr1 171498605 171498954 -71165399 - MER51B LTR ERV1 0 377 1 1081 213 114 30 chr1 171498954 171499099 -71165254 + MER69 DNA AcHobo 2382 2513 -13 1958 155 49 3 chr1 171499181 171499529 -71164824 + THE1B LTR MaLR 1 364 0 416 263 178 28 chr1 171499682 171499895 -71164458 - MIR SINE MIR -3 259 15 273 300 158 25 chr1 171499966 171500086 -71164267 + MIR SINE MIR 54 189 -73 2039 109 14 3 chr1 171500142 171500435 -71163918 + AluSq SINE Alu 9 304 -9 1883 89 0 31 chr1 171500762 171501019 -71163334 - AluSq SINE Alu -5 308 60 29 28 0 0 chr1 171502054 171502090 -71162263 + AT_rich Low_complexity Low_complexity 1 36 0 211 293 17 0 chr1 171502260 171502318 -71162035 - MIR SINE MIR -128 134 76 583 174 97 84 chr1 171502629 171502720 -71161633 - AluJo/FRAM SINE Alu -11 301 206 2366 94 3 0 chr1 171502720 171503028 -71161325 - AluSx SINE Alu -3 309 1 583 174 97 84 chr1 171503028 171503091 -71161262 - AluJo/FRAM SINE Alu -106 206 145 22 0 0 0 chr1 171503117 171503139 -71161214 + AT_rich Low_complexity Low_complexity 1 22 0 306 174 110 46 chr1 171503139 171503248 -71161105 - L1ME4a LINE L1 0 6121 6006 296 240 40 0 chr1 171503298 171503373 -71160980 + L2 LINE L2 2832 2909 -405 5983 99 13 4 chr1 171503663 171505383 -71158970 - L1PA14 LINE L1 -1 6160 4419 344 324 189 44 chr1 171505573 171505916 -71158437 - L2 LINE L2 0 3313 2921 234 0 0 0 chr1 171505916 171505942 -71158411 + (A)n Simple_repeat Simple_repeat 1 26 0 353 321 158 0 chr1 171505960 171506125 -71158228 - L2 LINE L2 -408 2906 2716 15695 139 22 29 chr1 171506149 171506509 -71157844 - Tigger2 DNA MER2_type 0 2718 2357 2592 56 3 0 chr1 171506509 171506815 -71157538 - AluY SINE Alu -4 307 1 15695 139 22 29 chr1 171506815 171507941 -71156412 - Tigger2 DNA MER2_type -361 2357 1225 2010 111 65 0 chr1 171507941 171508220 -71156133 - AluSg SINE Alu -4 306 10 15695 139 22 29 chr1 171508220 171509468 -71154885 - Tigger2 DNA MER2_type -1493 1225 1 239 373 9 0 chr1 171509602 171509712 -71154641 - MLT1J LTR MaLR -131 380 270 591 278 26 36 chr1 171509920 171510114 -71154239 - L2 LINE L2 -3 3310 3119 228 324 88 29 chr1 171510365 171510501 -71153852 - L2 LINE L2 -2834 480 337 6599 219 25 30 chr1 171510720 171510973 -71153380 - L1MC1 LINE L1 -18 6595 6342 2135 87 0 17 chr1 171510973 171511295 -71153058 - AluY SINE Alu 0 317 1 6599 219 25 30 chr1 171511295 171512742 -71151611 - L1MC1 LINE L1 -271 6342 4888 1610 183 25 7 chr1 171512742 171513026 -71151327 - AluJb SINE Alu -23 289 1 6599 219 25 30 chr1 171513026 171513511 -71150842 - L1MC1 LINE L1 -1725 4888 4402 261 83 0 0 chr1 171513511 171513547 -71150806 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6599 219 25 30 chr1 171513547 171513600 -71150753 - L1MC1 LINE L1 -2211 4402 4350 1925 136 43 13 chr1 171513600 171513901 -71150452 + AluSx SINE Alu 1 310 -2 6599 219 25 30 chr1 171513901 171514703 -71149650 - L1MC1 LINE L1 -2263 4350 3564 782 184 21 0 chr1 171514712 171514853 -71149500 - FRAM SINE Alu -25 151 8 6798 188 155 62 chr1 171514863 171516501 -71147852 - L1MC1 LINE L1 -2850 3576 2090 1820 149 23 20 chr1 171516501 171516802 -71147551 + AluJb SINE Alu 1 302 -10 6798 188 155 62 chr1 171516802 171518420 -71145933 - L1MC1 LINE L1 -4336 2090 20 251 185 0 99 chr1 171520535 171520616 -71143737 + LTR66 LTR ERVL 390 462 -148 266 295 89 68 chr1 171522183 171522373 -71141980 + MIR SINE MIR 20 213 -49 195 204 0 0 chr1 171524828 171524877 -71139476 + (CA)n Simple_repeat Simple_repeat 2 50 0 28 48 0 0 chr1 171525066 171525108 -71139245 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr1 171525249 171525273 -71139080 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr1 171525555 171525579 -71138774 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2088 116 3 3 chr1 171527087 171527397 -71136956 - AluSg SINE Alu 0 310 1 35 0 0 0 chr1 171527982 171528017 -71136336 + AT_rich Low_complexity Low_complexity 1 35 0 189 289 0 0 chr1 171530031 171530083 -71134270 - L2 LINE L2 -1 3312 3261 22 35 0 0 chr1 171530126 171530155 -71134198 + AT_rich Low_complexity Low_complexity 1 29 0 537 328 139 25 chr1 171530893 171531332 -71133021 + L2 LINE L2 662 1150 -2164 270 298 210 52 chr1 171531334 171531877 -71132476 + L2 LINE L2 1945 2573 -741 6882 62 7 2 chr1 171531989 171533131 -71131222 - L1PA7 LINE L1 -14 6140 4994 7465 82 33 11 chr1 171533132 171534192 -71130161 + L1PA7 LINE L1 3908 4990 -1156 727 307 126 16 chr1 171534195 171534732 -71129621 + L2 LINE L2 2698 3311 -2 271 178 156 33 chr1 171534887 171534977 -71129376 - MLT1D LTR MaLR -24 481 381 1542 225 102 8 chr1 171535037 171535401 -71128952 - MLT1D LTR MaLR -107 398 1 2442 228 50 41 chr1 171535438 171536170 -71128183 + L1MD2 LINE L1 5621 6359 0 1147 256 43 24 chr1 171536369 171536691 -71127662 + L1ME LINE L1 4859 5193 -969 2027 149 7 0 chr1 171536691 171536993 -71127360 + AluSx SINE Alu 1 304 -8 1147 256 43 24 chr1 171536993 171537294 -71127059 + L1ME LINE L1 5193 5487 -675 1862 168 33 71 chr1 171537294 171537530 -71126823 + MLT2C2 LTR ERVL 1 245 -169 1284 204 82 48 chr1 171537530 171537882 -71126471 + MLT1A1 LTR MaLR 1 364 -1 1862 168 33 71 chr1 171537882 171537910 -71126443 + MLT2C2 LTR ERVL 245 273 -141 2277 104 0 19 chr1 171537910 171538226 -71126127 + AluSg SINE Alu 1 310 0 1862 168 33 71 chr1 171538226 171538412 -71125941 + MLT2C2 LTR ERVL 273 374 -40 1209 176 118 47 chr1 171538437 171538733 -71125620 - L1MC1 LINE L1 -91 6242 5926 236 75 0 25 chr1 171540347 171540378 -71123975 - L1MA9 LINE L1 0 6312 6281 1346 31 0 6 chr1 171540378 171540540 -71123813 + L1PA3 LINE L1 5995 6155 0 1398 134 59 0 chr1 171540551 171540805 -71123548 - L1MA9 LINE L1 -16 6296 6028 229 294 43 0 chr1 171540854 171540946 -71123407 - L1M4 LINE L1 -1093 5053 4958 295 277 96 74 chr1 171541027 171541298 -71123055 + HAL1 LINE L1 388 664 -1843 840 307 61 18 chr1 171541348 171541375 -71122978 - L2 LINE L2 -172 3141 3117 2108 87 11 4 chr1 171541375 171541650 -71122703 + AluSp SINE Alu 37 313 0 840 307 61 18 chr1 171541650 171541763 -71122590 - L2 LINE L2 -196 3117 3010 2415 137 35 21 chr1 171541763 171542185 -71122168 + MSTA LTR MaLR 1 428 0 840 307 61 18 chr1 171542185 171542458 -71121895 - L2 LINE L2 -303 3010 2710 537 312 48 35 chr1 171542901 171543132 -71121221 - MLT1K LTR MaLR -212 376 143 388 383 7 0 chr1 171543318 171543467 -71120886 + MIR SINE MIR 10 159 -103 778 246 32 88 chr1 171543540 171543882 -71120471 + L2 LINE L2 2647 2969 -345 358 236 24 47 chr1 171543918 171544045 -71120308 - L2 LINE L2 -74 3239 3116 2318 99 0 10 chr1 171544159 171544471 -71119882 + AluSc SINE Alu 1 309 0 1667 231 124 40 chr1 171544887 171545091 -71119262 - L1MD2 LINE L1 -10 6349 6164 210 91 0 0 chr1 171545091 171545124 -71119229 + (TG)n Simple_repeat Simple_repeat 2 34 0 1667 231 124 40 chr1 171545124 171545490 -71118863 - L1MD2 LINE L1 -195 6164 5731 2339 71 3 7 chr1 171545705 171546002 -71118351 - AluY SINE Alu -15 296 1 821 86 13 118 chr1 171546435 171546587 -71117766 - AluSg/x SINE Alu 0 312 177 215 304 0 36 chr1 171546859 171546915 -71117438 - L2 LINE L2 -86 3186 3133 25 23 0 23 chr1 171546958 171546978 -71117375 + AT_rich Low_complexity Low_complexity 1 20 -22 1701 148 92 3 chr1 171546978 171547261 -71117092 + AluSx SINE Alu 2 309 -3 25 23 0 23 chr1 171547261 171547283 -71117070 + AT_rich Low_complexity Low_complexity 20 42 0 2228 106 17 0 chr1 171547491 171547866 -71116487 - AluSc SINE Alu 0 382 3 746 312 67 82 chr1 171547888 171548158 -71116195 + L2 LINE L2 987 1259 -2055 806 197 0 0 chr1 171548158 171548280 -71116073 - FLAM_C SINE Alu -10 123 2 746 312 67 82 chr1 171548280 171548830 -71115523 + L2 LINE L2 1259 1795 -1519 240 247 86 25 chr1 171548904 171548985 -71115368 + MLT1K LTR MaLR 123 208 -380 332 281 145 10 chr1 171549012 171549208 -71115145 - LTR50 LTR ERVL -26 631 320 2642 181 43 102 chr1 171549388 171549518 -71114835 - LTR9 LTR ERV1 0 612 476 2126 139 10 0 chr1 171549518 171549827 -71114526 + AluSx SINE Alu 1 312 0 2642 181 43 102 chr1 171549827 171549867 -71114486 - LTR9 LTR ERV1 -136 476 435 1097 79 11 17 chr1 171549867 171550044 -71114309 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 2642 181 43 102 chr1 171550044 171550548 -71113805 - LTR9 LTR ERV1 -177 435 12 390 273 100 33 chr1 171550636 171550786 -71113567 - LTR50 LTR ERVL -592 203 44 224 258 86 47 chr1 171551190 171551318 -71113035 - L2 LINE L2 -1189 2125 1993 185 0 40 0 chr1 171551521 171551546 -71112807 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1890 134 2 158 chr1 171551823 171552013 -71112340 - MLT1B LTR MaLR 0 390 172 1641 110 0 0 chr1 171552013 171552268 -71112085 - AluSg/x SINE Alu 0 320 66 1890 134 2 158 chr1 171552268 171552437 -71111916 - MLT1B LTR MaLR -218 172 115 2249 107 13 0 chr1 171552437 171552746 -71111607 - AluSq SINE Alu 0 313 1 1890 134 2 158 chr1 171552746 171552846 -71111507 - MLT1B LTR MaLR -275 115 1 2121 102 0 3 chr1 171553803 171554143 -71110210 + AluSx SINE Alu 1 339 0 2188 112 10 3 chr1 171554896 171555192 -71109161 + AluSx SINE Alu 1 298 -14 1493 199 28 17 chr1 171555751 171556042 -71108311 - AluJo SINE Alu -16 296 3 651 257 61 31 chr1 171556869 171557201 -71107152 - LTR35 LTR ERV1 -3 669 348 2035 146 3 0 chr1 171557529 171557830 -71106523 - AluSx SINE Alu -10 302 1 905 163 7 13 chr1 171557841 171557994 -71106359 - L1MC1 LINE L1 0 6333 6182 680 102 46 7 chr1 171557998 171558115 -71106238 + L1MC1 LINE L1 6074 6185 -148 431 368 13 4 chr1 171558502 171558741 -71105612 + L2 LINE L2 2150 2390 -924 43590 36 21 1 chr1 171558937 171564962 -71099391 - L1PA2 LINE L1 -4 6151 3 217 358 11 11 chr1 171565141 171565236 -71099117 + L2 LINE L2 2891 2985 -287 1848 119 68 0 chr1 171565853 171566131 -71098222 - AluSx SINE Alu -15 297 1 2123 122 13 3 chr1 171566440 171566743 -71097610 - AluSx SINE Alu -6 306 1 310 357 35 21 chr1 171566974 171567117 -71097236 + MLT1I LTR MaLR 131 275 -134 21 36 0 0 chr1 171567714 171567742 -71096611 + AT_rich Low_complexity Low_complexity 1 28 0 384 228 22 0 chr1 171567803 171567895 -71096458 - MIR SINE MIR -5 257 164 1814 187 91 39 chr1 171567952 171568259 -71096094 + MLT1C LTR MaLR 7 345 -122 4820 101 20 40 chr1 171568259 171568964 -71095389 - LTR8 LTR ERV1 0 691 1 1814 187 91 39 chr1 171568964 171569094 -71095259 + MLT1C LTR MaLR 345 467 0 289 359 64 53 chr1 171569267 171569415 -71094938 + L2 LINE L2 1383 1528 -1786 2300 188 36 122 chr1 171569415 171570021 -71094332 - MLT2B3 LTR ERVL 0 554 1 289 359 64 53 chr1 171570021 171570435 -71093918 + L2 LINE L2 1528 1951 -1363 1143 90 0 0 chr1 171570597 171570763 -71093590 + (TTC)n Simple_repeat Simple_repeat 3 168 0 683 232 72 22 chr1 171572855 171573036 -71091317 + MLT1J LTR MaLR 3 192 -319 24 53 0 0 chr1 171573352 171573390 -71090963 + AT_rich Low_complexity Low_complexity 1 38 0 1834 173 0 3 chr1 171573436 171573742 -71090611 - AluJb SINE Alu -6 306 2 2053 147 7 0 chr1 171574011 171574318 -71090035 - AluSx SINE Alu -3 309 1 21 0 0 0 chr1 171574612 171574633 -71089720 + AT_rich Low_complexity Low_complexity 1 21 0 1974 114 0 11 chr1 171576705 171576985 -71087368 + AluSx SINE Alu 1 277 -35 1613 57 0 0 chr1 171576985 171577204 -71087149 + AluY SINE Alu 92 310 0 2400 52 10 20 chr1 171577654 171577960 -71086393 + AluY SINE Alu 1 303 -8 438 236 99 52 chr1 171578391 171578603 -71085750 - MLT1I LTR MaLR -21 388 167 2101 122 40 3 chr1 171578605 171578901 -71085452 - AluSq SINE Alu -5 308 2 406 169 79 11 chr1 171578910 171578999 -71085354 - MLT1A1 LTR MaLR 0 365 271 272 365 52 88 chr1 171579253 171579376 -71084977 + L2 LINE L2 2897 3023 -249 2353 62 0 3 chr1 171579376 171579664 -71084689 + AluY SINE Alu 1 287 -24 272 365 52 88 chr1 171579664 171579924 -71084429 + L2 LINE L2 3023 3266 -6 2056 235 131 51 chr1 171580365 171580524 -71083829 - MLT2F LTR ERVL -2 661 516 1920 144 27 3 chr1 171580524 171580816 -71083537 + AluJo SINE Alu 5 303 -9 2056 235 131 51 chr1 171580816 171581268 -71083085 - MLT2F LTR ERVL -147 516 1 782 255 70 21 chr1 171581338 171581581 -71082772 - MIR SINE MIR 0 262 8 825 234 32 0 chr1 171581683 171581871 -71082482 + L1MA9 LINE L1 5508 5701 -611 1046 170 11 0 chr1 171581871 171582053 -71082300 - AluSq SINE Alu -8 305 122 2299 207 32 36 chr1 171582053 171582515 -71081838 + L1MA9 LINE L1 5692 6153 -159 2108 93 0 14 chr1 171582515 171582805 -71081548 - AluY SINE Alu 0 311 26 2299 207 32 36 chr1 171582805 171582927 -71081426 + L1MA9 LINE L1 6153 6274 -38 29 0 0 0 chr1 171582929 171582958 -71081395 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 171583137 171583166 -71081187 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr1 171583904 171583937 -71080416 + AT_rich Low_complexity Low_complexity 1 33 0 186 133 0 0 chr1 171584370 171584400 -71079953 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 309 301 39 0 chr1 171584445 171584548 -71079805 + MIR SINE MIR 47 153 -109 221 238 48 0 chr1 171584571 171584634 -71079719 - MIR SINE MIR -1 261 196 274 232 86 76 chr1 171584642 171584728 -71079625 + L1ME4a LINE L1 5748 5832 -289 2448 65 0 3 chr1 171584728 171585022 -71079331 + AluY SINE Alu 1 293 -18 274 232 86 76 chr1 171585022 171585133 -71079220 + L1ME4a LINE L1 5832 5947 -174 460 305 50 34 chr1 171585280 171585601 -71078752 - MARNA DNA Mariner -19 567 242 21 57 0 0 chr1 171585893 171585928 -71078425 + AT_rich Low_complexity Low_complexity 1 35 0 257 219 0 16 chr1 171586016 171586080 -71078273 + (TTG)n Simple_repeat Simple_repeat 1 63 0 2251 99 3 0 chr1 171586304 171586598 -71077755 - AluSx SINE Alu -17 295 1 25 0 0 0 chr1 171586661 171586686 -71077667 + AT_rich Low_complexity Low_complexity 1 25 0 504 318 107 33 chr1 171587030 171587407 -71076946 + L2 LINE L2 1698 2121 -1193 2242 117 3 0 chr1 171587407 171587716 -71076637 - AluSg SINE Alu 0 310 1 504 318 107 33 chr1 171587716 171587826 -71076527 + L2 LINE L2 2121 2221 -1093 235 373 41 6 chr1 171587892 171588061 -71076292 + L2 LINE L2 2353 2527 -787 1747 176 10 3 chr1 171588087 171588376 -71075977 - AluJo SINE Alu -20 292 2 1322 143 19 5 chr1 171588409 171588618 -71075735 + Tigger4(Zombi) DNA MER2_type 8 219 -2512 1933 115 0 67 chr1 171588625 171588918 -71075435 + Tigger4(Zombi) DNA MER2_type 2424 2694 -37 2305 122 0 0 chr1 171588918 171589229 -71075124 - AluSx SINE Alu 0 312 2 1933 115 0 67 chr1 171589229 171589265 -71075088 + Tigger4(Zombi) DNA MER2_type 2694 2731 0 1969 191 104 19 chr1 171589642 171590112 -71074241 + LTR54 LTR ERV1 1 510 0 1203 283 34 20 chr1 171590123 171590480 -71073873 + MER89-int LTR ERV1 1913 2274 -4057 2200 174 51 154 chr1 171590567 171591378 -71072975 - LTR8A LTR ERV1 0 727 1 337 230 0 119 chr1 171591378 171591504 -71072849 + MER89-int LTR ERV1 508 618 -6919 1806 173 20 0 chr1 171591700 171591995 -71072358 + AluSx SINE Alu 1 301 -11 271 280 13 13 chr1 171592829 171592904 -71071449 + MER89-int LTR ERV1 1030 1104 -3767 467 293 69 61 chr1 171593596 171594172 -71070181 + MER89-int LTR ERV1 3144 4317 -4309 273 304 51 14 chr1 171594141 171594279 -71070074 + MER89-int LTR ERV1 2720 2862 -3939 * 506 132 47 47 chr1 171594782 171594911 -71069442 - L1MB2 LINE L1 0 6171 6043 331 244 35 0 chr1 171594921 171595007 -71069346 - L2 LINE L2 0 3313 3225 741 139 44 136 chr1 171595095 171595368 -71068985 - Charlie1 DNA MER1_type 0 2761 2514 545 195 0 0 chr1 171595368 171595455 -71068898 + AluJ/FLAM SINE Alu 2 88 -224 303 202 32 11 chr1 171595463 171595557 -71068796 + GA-rich Low_complexity Low_complexity 2 97 0 460 163 11 11 chr1 171595557 171595649 -71068704 - Charlie1 DNA MER1_type -228 2533 2442 5226 213 33 43 chr1 171595662 171596068 -71068285 + L1M3f LINE L1 15 424 -5904 180 0 0 0 chr1 171596068 171596088 -71068265 + (GA)n Simple_repeat Simple_repeat 2 21 0 5226 213 33 43 chr1 171596088 171599019 -71065334 + L1M3f LINE L1 424 3312 -3016 382 69 0 0 chr1 171599031 171599089 -71065264 + L1PA15 LINE L1 6102 6159 -6 13296 195 52 48 chr1 171599149 171599891 -71064462 + L1MA4 LINE L1 2652 3389 -4330 269 89 22 0 chr1 171599891 171599936 -71064417 + (CA)n Simple_repeat Simple_repeat 1 46 0 13296 195 52 48 chr1 171599936 171600168 -71064185 + L1MA4 LINE L1 3389 3618 -4101 2225 40 37 81 chr1 171600168 171600489 -71063864 - AluY SINE Alu -4 307 1 13296 195 52 48 chr1 171600489 171602445 -71061908 + L1MA4 LINE L1 3618 5564 -2155 835 131 8 0 chr1 171602445 171602567 -71061786 - FLAM_C SINE Alu -20 123 1 13296 195 52 48 chr1 171602567 171604514 -71059839 + L1MA4 LINE L1 5564 7604 -115 1637 144 37 30 chr1 171604514 171604785 -71059568 + AluSx SINE Alu 1 273 -39 501 17 0 0 chr1 171604785 171604843 -71059510 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 1123 91 11 6 chr1 171604851 171605026 -71059327 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 254 179 18 0 chr1 171605033 171605089 -71059264 + GA-rich Low_complexity Low_complexity 1 57 0 583 189 8 0 chr1 171605090 171605212 -71059141 + L1MA4 LINE L1 7592 7714 -5 1652 161 49 3 chr1 171605212 171605536 -71058817 - Charlie1 DNA MER1_type -304 2457 2119 212 317 0 0 chr1 171605599 171605659 -71058694 - L2 LINE L2 -12 3301 3242 2374 51 3 3 chr1 171606648 171606944 -71057409 - AluY SINE Alu -15 296 1 663 186 0 9 chr1 171607012 171607125 -71057228 + FLAM_C SINE Alu 3 114 -29 215 358 46 0 chr1 171607145 171607254 -71057099 + MIR SINE MIR 138 251 -11 1823 174 7 0 chr1 171607388 171607687 -71056666 - AluJo SINE Alu -11 301 1 273 316 248 0 chr1 171607738 171607855 -71056498 - L2 LINE L2 -8 3264 3119 262 282 218 53 chr1 171607866 171608054 -71056299 + L2 LINE L2 3095 3313 0 12281 216 38 21 chr1 171608253 171611319 -71053034 - L1PA15-16 LINE L1 -1700 5097 1977 1260 123 5 15 chr1 171611319 171611514 -71052839 - AluSq SINE Alu -9 304 112 3831 184 14 7 chr1 171611517 171612212 -71052141 - L1PA15-16 LINE L1 -4820 1967 1268 3412 171 22 58 chr1 171612220 171612980 -71051373 - L1MC1 LINE L1 0 6333 5601 3174 237 51 36 chr1 171612977 171613340 -71051013 - L1M4 LINE L1 -2347 3687 3331 * 2031 108 11 0 chr1 171613340 171613642 -71050711 - AluY SINE Alu 0 305 1 3174 237 51 36 chr1 171613642 171614270 -71050083 - L1M4 LINE L1 -2703 3331 2674 795 128 8 8 chr1 171614270 171614403 -71049950 - L1PB4 LINE L1 0 6156 6024 3174 237 51 36 chr1 171614403 171614529 -71049824 - L1M4 LINE L1 -3360 2674 2551 592 276 11 11 chr1 171614569 171614750 -71049603 - L1M4 LINE L1 -5774 181 1 2301 93 3 3 chr1 171614796 171615098 -71049255 + AluSc SINE Alu 1 302 -7 388 200 12 0 chr1 171615261 171615341 -71049012 - MIR SINE MIR -10 252 172 200 288 159 61 chr1 171615418 171615550 -71048803 - MIR SINE MIR -117 145 1 1958 135 7 10 chr1 171616050 171616353 -71048000 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr1 171616402 171616424 -71047929 + AT_rich Low_complexity Low_complexity 1 22 0 655 201 14 7 chr1 171616624 171616763 -71047590 + Ricksha DNA DNA 1 140 -1114 256 95 48 0 chr1 171616770 171616812 -71047541 + Ricksha DNA DNA 242 285 -1761 7983 153 40 33 chr1 171616815 171617145 -71047208 + Ricksha DNA DNA 1704 2030 -1216 548 77 13 0 chr1 171617145 171617223 -71047130 - MADE1 DNA Mariner 0 80 2 7983 153 40 33 chr1 171617223 171617464 -71046889 + Ricksha DNA DNA 2030 2268 -978 2625 102 6 3 chr1 171617464 171617827 -71046526 - THE1B LTR MaLR 0 364 1 10343 111 31 17 chr1 171617827 171619385 -71044968 - THE1B-int LTR MaLR 0 1580 1 2588 101 20 3 chr1 171619385 171619740 -71044613 - THE1B LTR MaLR 0 364 4 7983 153 40 33 chr1 171619740 171620691 -71043662 + Ricksha DNA DNA 2267 3239 -7 364 267 17 0 chr1 171620714 171620830 -71043523 + L1MA10 LINE L1 6216 6333 -1 1195 129 24 93 chr1 171625378 171625576 -71038777 - AluJb SINE Alu -10 302 123 1887 137 39 0 chr1 171625576 171625860 -71038493 + AluSx SINE Alu 1 295 -17 1195 129 24 93 chr1 171625860 171625909 -71038444 - AluJb SINE Alu -189 123 72 336 339 61 17 chr1 171625992 171626107 -71038246 + L2 LINE L2 3153 3272 0 2087 126 17 0 chr1 171627281 171627574 -71036779 + AluSg SINE Alu 1 298 -12 24 53 0 0 chr1 171627654 171627692 -71036661 + AT_rich Low_complexity Low_complexity 1 38 0 303 314 198 14 chr1 171628102 171628309 -71036044 + MIR SINE MIR 2 246 -16 198 0 0 0 chr1 171628616 171628638 -71035715 + (TG)n Simple_repeat Simple_repeat 1 22 0 1589 176 4 18 chr1 171628642 171628921 -71035432 - AluJo SINE Alu -37 275 1 240 347 162 26 chr1 171629980 171630406 -71033947 + L2 LINE L2 2279 2762 -552 1994 106 3 34 chr1 171630740 171631066 -71033287 + AluSq SINE Alu 1 317 0 220 279 44 0 chr1 171631359 171631427 -71032926 + C-rich Low_complexity Low_complexity 5 75 0 27 0 0 0 chr1 171632949 171632976 -71031377 + AT_rich Low_complexity Low_complexity 1 27 0 564 308 144 49 chr1 171633802 171634307 -71030046 - L2 LINE L2 0 3313 2746 256 239 64 18 chr1 171634847 171634956 -71029397 - L1ME LINE L1 -239 5882 5769 251 336 64 18 chr1 171635696 171635806 -71028547 - L2 LINE L2 -179 3093 2979 273 151 0 0 chr1 171636415 171636468 -71027885 + (TAG)n Simple_repeat Simple_repeat 1 53 0 794 87 16 0 chr1 171637649 171637776 -71026577 - L1M1 LINE L1 -4139 3426 3298 360 0 0 0 chr1 171638144 171638184 -71026169 + (TG)n Simple_repeat Simple_repeat 2 41 0 742 263 63 117 chr1 171638417 171638531 -71025822 + HAL1 LINE L1 845 964 -1543 2128 108 0 3 chr1 171638531 171638818 -71025535 + AluSx SINE Alu 1 286 -26 742 263 63 117 chr1 171638818 171639277 -71025076 + HAL1 LINE L1 964 1387 -1120 1419 318 84 54 chr1 171639282 171640408 -71023945 + L2 LINE L2 1416 2575 -739 267 287 168 28 chr1 171640622 171640765 -71023588 - MIR SINE MIR -21 241 79 350 371 86 16 chr1 171640767 171641082 -71023271 + L2 LINE L2 2639 2975 -339 322 335 37 21 chr1 171641358 171641546 -71022807 + MLT1K LTR MaLR 338 528 -60 925 239 34 5 chr1 171641840 171642045 -71022308 - MER20 DNA MER1_type 0 219 9 22 0 0 0 chr1 171642990 171643012 -71021341 + AT_rich Low_complexity Low_complexity 1 22 0 184 229 0 0 chr1 171643500 171643535 -71020818 - MIR SINE MIR -155 107 73 295 272 184 7 chr1 171643637 171643784 -71020569 + L3 LINE CR1 674 846 -731 593 348 69 30 chr1 171643870 171644232 -71020121 - L3 LINE CR1 -1142 435 60 318 283 94 94 chr1 171644308 171644531 -71019822 - MIR SINE MIR -38 224 2 485 157 0 20 chr1 171644794 171644896 -71019457 + GA-rich Low_complexity Low_complexity 2 101 0 223 252 154 32 chr1 171645825 171645948 -71018405 + L2 LINE L2 2508 2645 -669 22 35 0 0 chr1 171647600 171647629 -71016724 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr1 171647885 171647919 -71016434 + AT_rich Low_complexity Low_complexity 1 34 0 918 320 82 38 chr1 171648360 171648919 -71015434 + L1M2c LINE L1 54 637 -6152 805 299 30 0 chr1 171649124 171649355 -71014998 + L1M2c LINE L1 1313 1550 -5239 555 236 6 0 chr1 171649369 171649526 -71014827 - L1M2 LINE L1 -4217 2632 2475 3456 212 58 2 chr1 171649538 171650547 -71013806 + L1M2c LINE L1 1553 2618 -4171 667 176 50 19 chr1 171650656 171650865 -71013488 + L1M2c LINE L1 2627 2838 -3950 * 35016 95 7 8 chr1 171650853 171656995 -71007358 + L1PA6 LINE L1 13 6153 -1 3324 227 23 9 chr1 171656991 171657020 -71007333 + L1M2c LINE L1 2818 2845 -3943 * 228 86 0 0 chr1 171657020 171657055 -71007298 + (CA)n Simple_repeat Simple_repeat 2 36 0 3324 227 23 9 chr1 171657055 171657946 -71006407 + L1M2c LINE L1 2845 3751 -3037 4205 169 13 60 chr1 171657977 171659019 -71005334 - L1M2 LINE L1 -3960 2889 1897 894 150 8 0 chr1 171659030 171659157 -71005196 + AluSq/x SINE Alu 1 128 -185 7101 237 18 62 chr1 171659161 171659405 -71004948 - L1M2 LINE L1 -4722 2127 1874 1972 137 0 27 chr1 171659405 171659698 -71004655 + AluSx SINE Alu 1 285 -27 7101 237 18 62 chr1 171659698 171659930 -71004423 - L1M2 LINE L1 -4975 1874 1633 2654 61 0 0 chr1 171659930 171660241 -71004112 - AluY SINE Alu 0 311 1 7101 237 18 62 chr1 171660241 171661906 -71002447 - L1M2 LINE L1 -5216 1633 84 2617 143 36 2 chr1 171661906 171662318 -71002035 + MSTB LTR MaLR 1 426 0 7101 237 18 62 chr1 171662318 171662399 -71001954 - L1M2 LINE L1 -6765 84 1 220 395 18 0 chr1 171663840 171663954 -71000399 + MIR SINE MIR 36 151 -111 1969 155 7 0 chr1 171664015 171664311 -71000042 - AluSx SINE Alu -14 298 1 512 208 175 0 chr1 171664642 171664796 -70999557 + Charlie8 DNA MER1_type 77 257 -2160 3573 198 61 35 chr1 171665006 171665836 -70998517 - MER21B LTR ERV1 -11 852 1 227 384 46 20 chr1 171665874 171666025 -70998328 - L2 LINE L2 -559 2755 2601 570 326 27 50 chr1 171667000 171667261 -70997092 - MIR SINE MIR -3 259 5 492 335 98 35 chr1 171667778 171668178 -70996175 + L2 LINE L2 2435 2859 -455 585 315 6 19 chr1 171668382 171668544 -70995809 + L2 LINE L2 3112 3271 -1 393 318 108 9 chr1 171669402 171669625 -70994728 + L1MEd LINE L1 816 1060 -5312 22191 172 25 21 chr1 171669636 171674395 -70989958 + L1PA11 LINE L1 11 5894 -1718 2292 124 52 3 chr1 171674395 171674742 -70989611 - THE1B LTR MaLR 0 364 1 22191 172 25 21 chr1 171674742 171676467 -70987886 + L1PA11 LINE L1 5894 7612 0 319 239 103 19 chr1 171676627 171676782 -70987571 + L1MEd LINE L1 1163 1330 -5042 351 363 56 9 chr1 171676799 171677014 -70987339 + L1MEd LINE L1 1242 1466 -4918 304 309 29 7 chr1 171677044 171677183 -70987170 + L1MEd LINE L1 1700 1841 -4722 2012 154 21 26 chr1 171677355 171677732 -70986621 - THE1C LTR MaLR 0 375 1 10560 114 10 34 chr1 171677733 171679351 -70985002 - THE1C-int LTR MaLR -1 1579 1 1878 144 67 25 chr1 171679351 171679711 -70984642 - THE1C LTR MaLR 0 375 1 301 308 0 26 chr1 171680946 171681063 -70983290 - MER89-int LTR ERV1 -866 6671 6558 1804 148 72 28 chr1 171681070 171681429 -70982924 - THE1C LTR MaLR 0 375 1 249 57 0 0 chr1 171683865 171683900 -70980453 + (GA)n Simple_repeat Simple_repeat 2 36 0 219 114 0 0 chr1 171683955 171683990 -70980363 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 3350 73 34 0 chr1 171684235 171684673 -70979680 + MLT2A2 LTR ERVL 1 453 0 21 0 0 0 chr1 171685137 171685158 -70979195 + AT_rich Low_complexity Low_complexity 1 21 0 312 321 43 49 chr1 171685489 171685651 -70978702 - MER89-int LTR ERV1 -4094 2707 2547 2338 128 0 0 chr1 171685845 171686151 -70978202 - AluSx SINE Alu -4 308 3 1654 117 0 0 chr1 171688060 171688282 -70976071 + AluSg/x SINE Alu 81 302 -8 851 351 4 29 chr1 171688286 171688739 -70975614 + L1M3a LINE L1 1539 1980 -5506 492 261 42 37 chr1 171689419 171689634 -70974719 + L1M3a LINE L1 1901 2116 -5449 * 28304 106 13 15 chr1 171689622 171695882 -70968471 + L1PA7 LINE L1 206 6461 -8 1120 184 0 0 chr1 171695885 171696070 -70968283 + AluSg/x SINE Alu 121 305 -7 601 229 0 0 chr1 171696070 171696179 -70968174 + AluJo/FRAM SINE Alu 180 288 -24 1425 224 113 59 chr1 171696187 171696852 -70967501 + L1M3a LINE L1 2577 3277 -4288 330 277 67 25 chr1 171696857 171696976 -70967377 + L1M3a LINE L1 3684 3807 -3758 290 316 10 20 chr1 171697204 171697302 -70967051 - MER5B DNA MER1_type -81 97 1 635 185 43 0 chr1 171697402 171697564 -70966789 + L1M1 LINE L1 2605 2773 -4792 404 352 54 84 chr1 171697737 171698372 -70965981 + L2 LINE L2 2661 3272 0 393 344 65 0 chr1 171700121 171700307 -70964046 - HERVL LTR ERVL -2568 3086 2889 270 268 79 47 chr1 171700361 171700488 -70963865 - HERVL LTR ERVL -3927 1837 1707 1527 233 40 25 chr1 171701460 171701859 -70962494 + MLT1I LTR MaLR 3 407 -2 269 282 325 5 chr1 171702892 171703080 -70961273 + MIR SINE MIR 14 261 -1 1109 251 53 64 chr1 171703091 171703130 -70961223 - MLT2C2 LTR ERVL -2 462 424 248 0 31 0 chr1 171703130 171703162 -70961191 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 33 0 0 chr1 171703165 171703195 -70961158 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 1109 251 53 64 chr1 171703195 171703618 -70960735 - MLT2C2 LTR ERVL -42 422 1 1914 163 69 27 chr1 171704088 171704492 -70959861 + MSTC LTR MaLR 2 422 -6 289 195 0 52 chr1 171704775 171704852 -70959501 + MER116 DNA Mariner 1 73 -7 1876 131 11 0 chr1 171704872 171705201 -70959152 + AluSx SINE Alu 1 332 0 2019 139 13 0 chr1 171705211 171705514 -70958839 + AluSx SINE Alu 2 308 -4 195 208 20 40 chr1 171705858 171705959 -70958394 + (TATATG)n Simple_repeat Simple_repeat 6 104 0 1876 169 0 3 chr1 171707576 171707889 -70956464 + AluJb SINE Alu 1 312 0 234 229 0 0 chr1 171708032 171708102 -70956251 + (TA)n Simple_repeat Simple_repeat 2 71 0 300 53 0 0 chr1 171708119 171708157 -70956196 + (CA)n Simple_repeat Simple_repeat 1 38 0 257 411 7 0 chr1 171708747 171708888 -70955465 + L3 LINE CR1 1346 1487 -90 481 270 48 58 chr1 171709059 171709248 -70955105 + MER5A DNA MER1_type 3 189 0 2657 145 16 40 chr1 171709988 171710484 -70953869 + L1MA3 LINE L1 5678 6161 -144 1664 126 55 41 chr1 171710487 171710780 -70953573 - AluSx SINE Alu 0 312 16 705 184 0 37 chr1 171710815 171710978 -70953375 + L1MA3 LINE L1 6149 6305 0 801 95 17 17 chr1 171711318 171711434 -70952919 + FLAM_C SINE Alu 1 116 -27 488 356 23 0 chr1 171711985 171712162 -70952191 + MIR SINE MIR 81 261 -1 363 264 0 0 chr1 171712162 171712302 -70952051 + (TA)n Simple_repeat Simple_repeat 2 141 0 228 170 0 0 chr1 171712308 171712355 -70951998 - LTR66 LTR ERVL -169 441 395 299 213 12 0 chr1 171712357 171712437 -70951916 + (TA)n Simple_repeat Simple_repeat 2 82 0 323 261 0 33 chr1 171712461 171712553 -70951800 - L1MC4 LINE L1 -1342 6700 6612 202 200 0 0 chr1 171712553 171712588 -70951765 + (TATG)n Simple_repeat Simple_repeat 2 36 0 303 191 0 0 chr1 171712630 171712698 -70951655 + (TA)n Simple_repeat Simple_repeat 2 69 0 358 252 219 19 chr1 171712788 171712998 -70951355 + L1ME4a LINE L1 5785 6036 -85 227 265 103 77 chr1 171713003 171713120 -70951233 - L3 LINE CR1 -404 1173 1054 240 143 0 0 chr1 171713174 171713209 -70951144 - MIR SINE MIR -11 251 217 479 331 65 56 chr1 171713426 171713873 -70950480 - L2 LINE L2 -984 2330 1880 304 273 234 39 chr1 171714031 171714236 -70950117 + L1MC/D LINE L1 5314 5558 -801 210 250 0 158 chr1 171714394 171714470 -70949883 + L2 LINE L2 3246 3309 -4 1238 123 23 27 chr1 171715315 171715535 -70948818 + MER20 DNA MER1_type 1 219 0 491 253 76 13 chr1 171716578 171716736 -70947617 - L3 LINE CR1 -192 1385 1218 424 183 49 0 chr1 171717636 171717718 -70946635 + L1MCa LINE L1 21 106 -6320 2048 125 0 0 chr1 171717908 171718217 -70946136 + AluSx SINE Alu 1 309 0 1590 140 0 157 chr1 171718470 171718877 -70945476 - MER7A DNA MER2_type -3 343 3 542 241 92 11 chr1 171718880 171719054 -70945299 - MIR SINE MIR -1 261 74 2331 84 7 0 chr1 171719910 171720218 -70944135 + AluSp SINE Alu 1 310 -3 28 0 0 0 chr1 171720218 171720246 -70944107 + AT_rich Low_complexity Low_complexity 1 28 0 418 281 81 19 chr1 171722455 171722615 -70941738 + MIR SINE MIR 34 203 -59 378 344 92 34 chr1 171723327 171723763 -70940590 + L2 LINE L2 2255 2715 -599 195 42 0 0 chr1 171724205 171724229 -70940124 + (TG)n Simple_repeat Simple_repeat 2 25 0 463 300 82 27 chr1 171724264 171724498 -70939855 - MIR SINE MIR 0 262 10 344 299 0 0 chr1 171724671 171724768 -70939585 + MIR SINE MIR 148 244 -18 339 44 0 0 chr1 171724771 171724816 -70939537 - MADE1 DNA Mariner 0 80 36 23 0 0 0 chr1 171724967 171724990 -70939363 + AT_rich Low_complexity Low_complexity 1 23 0 702 275 44 48 chr1 171725198 171725449 -70938904 - MIR SINE MIR 0 262 13 3559 131 37 14 chr1 171726798 171727388 -70936965 - MER6A DNA MER2_type 0 605 2 1460 235 79 42 chr1 171727657 171728138 -70936215 + MLT1D LTR MaLR 3 501 -4 559 250 16 0 chr1 171728259 171728387 -70935966 + L1MCa LINE L1 21 150 -6276 180 219 191 86 chr1 171728408 171728513 -70935840 - MIR SINE MIR -56 206 91 1607 175 0 4 chr1 171729073 171729342 -70935011 + AluJb SINE Alu 1 268 -44 21 0 0 0 chr1 171729870 171729891 -70934462 + AT_rich Low_complexity Low_complexity 1 21 0 366 294 147 25 chr1 171730244 171730407 -70933946 - MIR SINE MIR -69 193 11 475 242 8 0 chr1 171730522 171730650 -70933703 + L1MC4 LINE L1 7914 8042 0 529 211 0 53 chr1 171730668 171730782 -70933571 - L1MC4 LINE L1 -124 7918 7811 7140 216 64 73 chr1 171730782 171733073 -70931280 - L1MC4a LINE L1 -181 7627 5357 231 318 15 0 chr1 171733112 171733178 -70931175 + L1ME3A LINE L1 5954 6020 -150 313 264 57 14 chr1 171733367 171733507 -70930846 + L1MCa LINE L1 2375 2520 -3908 4540 178 44 77 chr1 171733515 171734730 -70929623 - L1M3 LINE L1 -701 5482 4259 2027 162 81 0 chr1 171734735 171735142 -70929211 - L1MA4 LINE L1 0 6300 5861 2357 87 0 0 chr1 171735424 171735735 -70928618 - AluY SINE Alu 0 311 1 2040 157 0 0 chr1 171736359 171736704 -70927649 + AluSx SINE Alu 1 345 0 1911 158 78 11 chr1 171736704 171737064 -70927289 + MSTB LTR MaLR 41 424 -2 700 174 0 0 chr1 171737350 171737465 -70926888 + FLAM_A SINE Alu 13 127 -15 205 237 32 86 chr1 171739004 171739097 -70925256 + L2 LINE L2 3226 3313 0 377 271 139 13 chr1 171739100 171739251 -70925102 + MIR SINE MIR 91 260 -2 23 68 0 0 chr1 171740238 171740282 -70924071 + AT_rich Low_complexity Low_complexity 1 44 0 467 317 54 9 chr1 171740517 171740741 -70923612 + HAL1 LINE L1 12 245 -2262 473 299 45 26 chr1 171740789 171740943 -70923410 + L2 LINE L2 3116 3272 0 23 0 0 0 chr1 171741259 171741282 -70923071 + AT_rich Low_complexity Low_complexity 1 23 0 2707 173 65 8 chr1 171741623 171742143 -70922210 - MER44D DNA MER2_type 0 605 1 378 107 0 0 chr1 171742512 171742568 -70921785 + (TA)n Simple_repeat Simple_repeat 2 57 0 244 269 0 0 chr1 171742588 171742640 -70921713 - MIR3 SINE MIR -6 202 151 1164 26 98 0 chr1 171742865 171743018 -70921335 - SVA Other Other -1076 310 143 194 313 109 0 chr1 171743018 171743082 -70921271 + MER5A DNA MER1_type 53 123 -66 2057 127 0 0 chr1 171743119 171743426 -70920927 - AluSx SINE Alu -5 307 1 21 36 0 0 chr1 171744329 171744357 -70919996 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr1 171744967 171745001 -70919352 + (TA)n Simple_repeat Simple_repeat 2 35 0 2409 51 0 35 chr1 171745001 171745316 -70919037 - AluY SINE Alu -7 304 1 1286 236 91 6 chr1 171745587 171745939 -70918414 + MLT1B LTR MaLR 2 383 -7 2186 93 13 22 chr1 171746521 171746834 -70917519 + AluSg SINE Alu 1 310 0 374 273 232 16 chr1 171747056 171747250 -70917103 + MIR SINE MIR 6 241 -21 2004 130 3 3 chr1 171748456 171748755 -70915598 + AluSx SINE Alu 1 299 -13 229 321 24 0 chr1 171749122 171749206 -70915147 + L2 LINE L2 3228 3313 0 1294 174 40 56 chr1 171750425 171750729 -70913624 + AluJo SINE Alu 1 299 -13 869 296 36 4 chr1 171750922 171751169 -70913184 + MIR SINE MIR 6 260 -2 222 235 0 0 chr1 171751479 171751530 -70912823 + (TA)n Simple_repeat Simple_repeat 2 52 0 31 0 0 0 chr1 171751676 171751707 -70912646 + AT_rich Low_complexity Low_complexity 1 31 0 192 40 0 0 chr1 171752389 171752414 -70911939 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 257 231 0 15 chr1 171752451 171752516 -70911837 + GA-rich Low_complexity Low_complexity 3 66 0 276 238 22 62 chr1 171752516 171752728 -70911625 + L1MC4a LINE L1 5160 5365 -802 1013 266 71 23 chr1 171752781 171753175 -70911178 + L1MC4a LINE L1 5518 5930 -1878 30 45 0 0 chr1 171753326 171753370 -70910983 + AT_rich Low_complexity Low_complexity 1 44 0 2152 126 0 0 chr1 171753609 171753902 -70910451 + AluSx SINE Alu 1 293 -19 1225 154 117 0 chr1 171755330 171755544 -70908809 - AluJb SINE Alu -69 243 5 372 259 170 7 chr1 171755664 171755799 -70908554 + MIR SINE MIR 100 256 -6 802 244 25 0 chr1 171756055 171756215 -70908138 - MER5A DNA MER1_type -8 181 18 373 346 118 20 chr1 171756283 171756537 -70907816 - L2 LINE L2 -139 3174 2896 339 254 154 8 chr1 171757740 171757870 -70906483 - MIR SINE MIR -12 250 102 863 333 143 28 chr1 171758324 171758928 -70905425 + L2 LINE L2 1362 2091 -1223 1962 130 37 3 chr1 171758928 171759228 -70905125 - AluSx SINE Alu -2 310 1 863 333 143 28 chr1 171759228 171759459 -70904894 + L2 LINE L2 2091 2294 -1020 700 231 154 14 chr1 171760930 171761151 -70903202 + MIR SINE MIR 11 262 0 201 382 52 37 chr1 171761563 171761699 -70902654 - L2 LINE L2 -1 3271 3134 2142 107 23 10 chr1 171761944 171762252 -70902101 - AluSx SINE Alu 0 312 1 1356 281 103 11 chr1 171763158 171763225 -70901128 - LTR33 LTR ERVL 0 521 462 3774 48 0 4 chr1 171763225 171763702 -70900651 + L1PA4 LINE L1 5678 6152 -3 1356 281 103 11 chr1 171763702 171764111 -70900242 - LTR33 LTR ERVL -59 462 1 305 298 57 8 chr1 171764141 171764265 -70900088 + L2 LINE L2 1936 2065 -1249 1084 215 9 5 chr1 171764372 171764586 -70899767 - MER20 DNA MER1_type -3 216 2 230 294 0 15 chr1 171764643 171764711 -70899642 + L2 LINE L2 2588 2654 -660 191 36 36 0 chr1 171765151 171765179 -70899174 + (CA)n Simple_repeat Simple_repeat 2 30 0 254 328 70 79 chr1 171765475 171765716 -70898637 - MIR SINE MIR -4 258 20 1014 284 112 54 chr1 171766943 171767382 -70896971 + L1M4 LINE L1 2234 2646 -3500 2155 114 7 0 chr1 171767382 171767689 -70896664 + AluSx SINE Alu 1 309 -3 1014 284 112 54 chr1 171767689 171768177 -70896176 + L1M4 LINE L1 2646 3104 -3042 2310 101 0 0 chr1 171768177 171768475 -70895878 + AluSg SINE Alu 1 298 -12 1014 284 112 54 chr1 171768475 171768999 -70895354 + L1M4 LINE L1 3104 3771 -2375 14792 57 2 1 chr1 171769213 171771893 -70892460 + L1PA5 LINE L1 3475 6154 0 9762 194 24 38 chr1 171771916 171772963 -70891390 + L1PA13 LINE L1 2350 3411 -2735 2184 90 0 4 chr1 171772963 171773241 -70891112 - AluY SINE Alu -24 287 11 9762 194 24 38 chr1 171773241 171773396 -70890957 + L1PA13 LINE L1 3411 3567 -2579 207 0 0 0 chr1 171773396 171773419 -70890934 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9762 194 24 38 chr1 171773419 171774560 -70889793 + L1PA13 LINE L1 3567 4660 -1486 6822 147 75 20 chr1 171774558 171774923 -70889430 - L1PBa LINE L1 -3604 3258 2914 * 1977 101 38 0 chr1 171774923 171775190 -70889163 - AluY SINE Alu -12 299 23 6822 147 75 20 chr1 171775190 171776294 -70888059 - L1PBa LINE L1 -3948 2914 1709 * 10520 180 23 5 chr1 171776290 171777701 -70886652 + L1PB1 LINE L1 2983 4366 -1785 1822 31 0 9 chr1 171777701 171777911 -70886442 + L1PA4 LINE L1 5932 6144 -11 225 0 0 0 chr1 171777911 171777936 -70886417 + (CA)n Simple_repeat Simple_repeat 2 26 0 1822 31 0 9 chr1 171777936 171777948 -70886405 + L1PA4 LINE L1 6144 6155 0 10520 180 23 5 chr1 171777948 171779660 -70884693 + L1PB1 LINE L1 4366 6151 0 5302 141 14 3 chr1 171779673 171781161 -70883192 + L1PA13 LINE L1 4644 6144 -19 375 205 26 8 chr1 171781161 171781278 -70883075 - L1 LINE L1 -2928 3218 3100 2029 90 50 0 chr1 171781280 171781557 -70882796 - AluY SINE Alu -20 291 1 195 381 76 8 chr1 171781583 171781701 -70882652 + L2 LINE L2 2918 3043 -229 213 320 0 0 chr1 171781706 171781756 -70882597 + L2 LINE L2 3207 3256 -16 27708 94 6 9 chr1 171781968 171782968 -70881385 + L1PA7 LINE L1 1321 2323 -3831 207 0 0 0 chr1 171782968 171782991 -70881362 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 27708 94 6 9 chr1 171782991 171786829 -70877524 + L1PA7 LINE L1 2323 6143 -11 306 0 0 0 chr1 171787532 171787566 -70876787 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7293 90 19 11 chr1 171787867 171788921 -70875432 + L1P LINE L1 11 1072 -5074 22 0 0 0 chr1 171791068 171791090 -70873263 + AT_rich Low_complexity Low_complexity 1 22 0 760 330 117 19 chr1 171791386 171791965 -70872388 + L2 LINE L2 2167 2802 -512 307 243 117 18 chr1 171793251 171793362 -70870991 + L1ME LINE L1 5279 5400 -746 343 318 120 33 chr1 171793403 171793785 -70870568 + L1ME LINE L1 5466 5884 -286 59 92 0 0 chr1 171793842 171794006 -70870347 + AT_rich Low_complexity Low_complexity 1 164 0 2341 100 0 0 chr1 171794270 171794570 -70869783 + AluSq SINE Alu 1 300 -13 29 28 0 0 chr1 171795101 171795137 -70869216 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 171795293 171795317 -70869036 + AT_rich Low_complexity Low_complexity 1 24 0 462 253 110 33 chr1 171796474 171796656 -70867697 + L2 LINE L2 3118 3313 0 1584 160 39 3 chr1 171796666 171796978 -70867375 + MER33 DNA MER1_type 2 324 0 723 245 59 10 chr1 171796996 171797200 -70867153 + MIR SINE MIR 46 259 -3 1140 169 103 19 chr1 171798289 171798556 -70865797 - MER1B DNA MER1_type 0 329 1 294 132 0 0 chr1 171798583 171798636 -70865717 + (TG)n Simple_repeat Simple_repeat 1 53 0 8127 198 61 20 chr1 171799165 171799451 -70864902 - Cheshire DNA MER1_type 0 2420 2147 2029 116 10 13 chr1 171799451 171799761 -70864592 - AluY SINE Alu -2 309 1 8127 198 61 20 chr1 171799761 171801746 -70862607 - Cheshire DNA MER1_type -273 2147 67 2812 184 73 36 chr1 171801951 171802105 -70862248 + L1MC3 LINE L1 6706 6853 -932 236 54 54 0 chr1 171802105 171802142 -70862211 + A-rich Low_complexity Low_complexity 4 42 0 2812 184 73 36 chr1 171802142 171802645 -70861708 + L1MC3 LINE L1 6853 7387 -398 679 13 0 0 chr1 171802750 171802829 -70861524 - L1PA2 LINE L1 -9 6146 6068 268 283 43 43 chr1 171804981 171805073 -70859280 + MIR3 SINE MIR 88 179 -29 972 87 40 0 chr1 171806188 171806338 -70858015 - L1MA3 LINE L1 0 6305 6150 180 0 0 0 chr1 171806991 171807011 -70857342 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 171808212 171808233 -70856120 + AT_rich Low_complexity Low_complexity 1 21 0 250 270 24 103 chr1 171808506 171808632 -70855721 + L2 LINE L2 3190 3305 -8 310 21 43 0 chr1 171808635 171808682 -70855671 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 1219 316 94 18 chr1 171809156 171809944 -70854409 - L2 LINE L2 -338 2976 2129 198 346 185 49 chr1 171810040 171810986 -70853367 - L2 LINE L2 -428 2886 1812 249 292 15 0 chr1 171812281 171812346 -70852007 + L2 LINE L2 3248 3313 0 209 314 70 35 chr1 171812969 171813055 -70851298 + MIR SINE MIR 34 122 -86 3118 128 87 0 chr1 171813235 171813720 -70850633 - MER1A DNA MER1_type 0 527 1 236 335 47 47 chr1 171813775 171813945 -70850408 - MER5A DNA MER1_type 0 189 20 317 289 46 33 chr1 171814801 171814953 -70849400 + L3 LINE CR1 966 1119 -458 1840 179 0 3 chr1 171815033 171815341 -70849012 - AluJb SINE Alu -5 307 1 412 192 31 62 chr1 171815946 171816076 -70848277 + MIR SINE MIR 125 250 -12 298 271 9 9 chr1 171816808 171816915 -70847438 + Charlie7 DNA MER1_type 61 167 -2445 2075 98 0 29 chr1 171817132 171817438 -70846915 - AluSg SINE Alu -13 297 1 315 197 0 0 chr1 171817801 171817862 -70846491 - L1MB7 LINE L1 -25 6159 6099 * 3998 247 78 35 chr1 171817848 171820338 -70844015 - L1M4c LINE L1 -2711 3933 1203 576 245 0 0 chr1 171820339 171820441 -70843912 + MER2 DNA MER2_type 1 102 -243 5619 102 23 17 chr1 171820447 171820793 -70843560 + L1PB2 LINE L1 5118 5461 -690 2404 79 102 6 chr1 171820793 171821135 -70843218 + THE1C LTR MaLR 1 375 0 5619 102 23 17 chr1 171821135 171821462 -70842891 + L1PB2 LINE L1 5461 5799 -352 339 25 0 0 chr1 171821462 171821502 -70842851 + (CA)n Simple_repeat Simple_repeat 2 41 0 5619 102 23 17 chr1 171821502 171821814 -70842539 + L1PB2 LINE L1 5799 6108 -43 467 231 100 0 chr1 171821814 171821974 -70842379 + MER2 DNA MER2_type 34 209 -136 25 65 0 0 chr1 171821979 171822025 -70842328 + AT_rich Low_complexity Low_complexity 1 46 0 965 153 50 37 chr1 171822069 171822310 -70842043 - L1M4c LINE L1 -5346 1196 953 1612 214 89 40 chr1 171822339 171822811 -70841542 + MLT1D LTR MaLR 5 499 -6 1668 251 20 24 chr1 171822852 171823307 -70841046 - L1M4c LINE L1 -6085 457 5 310 157 57 29 chr1 171823581 171823651 -70840702 - LTR33A LTR ERVL -6 517 446 591 232 146 46 chr1 171823768 171824174 -70840179 - L1M4 LINE L1 -2919 3227 2769 1829 136 97 24 chr1 171824644 171824983 -70839370 - THE1B LTR MaLR 0 364 1 2230 103 7 3 chr1 171824995 171825296 -70839057 - AluSq SINE Alu -11 302 1 24 0 0 0 chr1 171825377 171825401 -70838952 + AT_rich Low_complexity Low_complexity 1 24 0 209 278 0 0 chr1 171825413 171825467 -70838886 + CT-rich Low_complexity Low_complexity 2 55 0 262 323 30 30 chr1 171825924 171826023 -70838330 + L3 LINE CR1 1391 1489 -88 24 0 0 0 chr1 171827180 171827204 -70837149 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr1 171827817 171827840 -70836513 + (CA)n Simple_repeat Simple_repeat 1 23 0 241 194 31 112 chr1 171827914 171828012 -70836341 + MIR SINE MIR 124 213 -49 23 54 0 0 chr1 171831168 171831205 -70833148 + AT_rich Low_complexity Low_complexity 1 37 0 2178 111 0 35 chr1 171832194 171832509 -70831844 + AluSq SINE Alu 1 304 -9 491 346 88 11 chr1 171833211 171833471 -70830882 - L3b LINE CR1 -18 1565 1286 302 372 128 7 chr1 171833518 171833666 -70830687 + MIR3 SINE MIR 18 183 -25 2003 128 7 0 chr1 171834603 171834891 -70829462 + AluSx SINE Alu 11 300 -12 271 244 122 22 chr1 171835318 171835408 -70828945 - MIR SINE MIR -152 110 12 232 121 0 0 chr1 171835971 171836004 -70828349 + L2 LINE L2 3265 3297 -16 353 253 185 16 chr1 171836061 171836219 -70828134 + MIR3 SINE MIR 9 201 -7 23 33 0 0 chr1 171836439 171836469 -70827884 + AT_rich Low_complexity Low_complexity 1 30 0 240 213 16 0 chr1 171836980 171837041 -70827312 + L1MC5 LINE L1 7840 7901 -60 22 0 0 0 chr1 171838134 171838156 -70826197 + AT_rich Low_complexity Low_complexity 1 22 0 202 96 77 19 chr1 171838465 171838517 -70825836 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 182 292 72 104 chr1 171838734 171839166 -70825187 - L2 LINE L2 -1105 2209 1792 * 332 400 14 0 chr1 171839165 171839310 -70825043 - L2 LINE L2 -4 3268 3122 212 320 101 36 chr1 171839415 171839662 -70824691 - L2 LINE L2 -357 2957 2695 519 244 69 6 chr1 171839784 171839944 -70824409 - L2 LINE L2 -954 2360 2191 584 328 157 40 chr1 171839945 171840549 -70823804 - L2 LINE L2 -2064 1250 529 189 0 0 0 chr1 171840549 171840570 -70823783 + (GA)n Simple_repeat Simple_repeat 2 22 0 584 328 157 40 chr1 171840570 171840761 -70823592 - L2 LINE L2 -2785 529 362 656 143 0 0 chr1 171841816 171841921 -70822432 + L1PA16 LINE L1 6051 6155 -11 312 349 23 29 chr1 171842761 171842936 -70821417 - MIR SINE MIR -51 211 39 260 297 93 27 chr1 171843014 171843307 -70821046 - MLT1L LTR MaLR -18 597 240 25 31 0 0 chr1 171843685 171843717 -70820636 + AT_rich Low_complexity Low_complexity 1 32 0 2694 135 30 9 chr1 171844876 171845314 -70819039 + L1PA16 LINE L1 5711 6157 -9 324 0 0 0 chr1 171845438 171845474 -70818879 + (CA)n Simple_repeat Simple_repeat 1 36 0 771 311 128 70 chr1 171846326 171847257 -70817096 + L3 LINE CR1 564 1548 -29 596 271 61 6 chr1 171847343 171847524 -70816829 + MIR SINE MIR 72 262 0 392 39 0 0 chr1 171849143 171849194 -70815159 - MADE1 DNA Mariner 0 80 30 283 315 80 31 chr1 171849308 171849470 -70814883 + L2 LINE L2 2697 2866 -448 1892 134 31 64 chr1 171849547 171849935 -70814418 - THE1C LTR MaLR 0 375 1 2958 128 34 8 chr1 171851085 171851441 -70812912 - L1PB4 LINE L1 -8 6148 5803 288 0 0 0 chr1 171851441 171851473 -70812880 + (TG)n Simple_repeat Simple_repeat 1 32 0 324 0 0 0 chr1 171851474 171851510 -70812843 + (TA)n Simple_repeat Simple_repeat 2 37 0 2958 128 34 8 chr1 171851510 171851650 -70812703 - L1PB4 LINE L1 -352 5804 5637 700 140 7 15 chr1 171851788 171851924 -70812429 + GA-rich Low_complexity Low_complexity 3 137 0 28 61 0 0 chr1 171852655 171852704 -70811649 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr1 171852753 171852785 -70811568 + AT_rich Low_complexity Low_complexity 1 32 0 2426 73 0 3 chr1 171852934 171853235 -70811118 + AluY SINE Alu 1 300 -11 23 0 0 0 chr1 171853985 171854008 -70810345 + AT_rich Low_complexity Low_complexity 1 23 0 301 296 0 0 chr1 171854012 171854083 -70810270 - L2 LINE L2 -22 3291 3221 306 0 0 0 chr1 171854686 171854720 -70809633 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 486 382 61 26 chr1 171855101 171855753 -70808600 + L2 LINE L2 2001 2675 -639 212 305 137 0 chr1 171855811 171855906 -70808447 + L2 LINE L2 2946 3053 -219 189 0 0 0 chr1 171856101 171856122 -70808231 + (TAA)n Simple_repeat Simple_repeat 2 22 0 393 176 15 0 chr1 171856530 171856598 -70807755 - Charlie3 DNA MER1_type -2641 69 1 2366 85 0 7 chr1 171856992 171857298 -70807055 + AluY SINE Alu 1 304 -7 956 288 194 20 chr1 171860800 171861469 -70802884 - L2 LINE L2 0 3313 2551 822 257 271 37 chr1 171861493 171861980 -70802373 - L2 LINE L2 -1133 2181 1581 1755 252 59 15 chr1 171861988 171862512 -70801841 - L2 LINE L2 -2164 1150 604 27 87 0 0 chr1 171862614 171862683 -70801670 + AT_rich Low_complexity Low_complexity 1 69 0 231 221 243 21 chr1 171863450 171863590 -70800763 - L1ME4a LINE L1 -92 6029 5859 695 169 0 8 chr1 171863654 171863816 -70800537 + L1PA15 LINE L1 6024 6184 0 356 330 129 0 chr1 171863839 171864033 -70800320 + MIR SINE MIR 40 258 -4 628 259 62 74 chr1 171864046 171864382 -70799971 - L1ME4a LINE L1 -273 5848 5517 308 183 0 73 chr1 171865537 171865619 -70798734 + L1ME2 LINE L1 6081 6156 -8 1223 248 66 25 chr1 171865644 171866052 -70798301 + L1MC4 LINE L1 7608 8032 -10 1180 313 68 30 chr1 171866788 171867286 -70797067 - MLT1K LTR MaLR -3 585 69 240 103 0 26 chr1 171867492 171867531 -70796822 - LTR18B LTR ERVL -105 509 472 1962 126 132 68 chr1 171867531 171867802 -70796551 - LTR18B LTR ERVL -114 500 185 186 103 0 0 chr1 171867802 171867831 -70796522 + (CATGC)n Simple_repeat Simple_repeat 4 32 0 1962 126 132 68 chr1 171867831 171868029 -70796324 - LTR18B LTR ERVL -429 185 1 763 174 41 87 chr1 171868954 171869149 -70795204 - MER5A DNA MER1_type -1 188 3 22 80 0 0 chr1 171869871 171869921 -70794432 + AT_rich Low_complexity Low_complexity 1 50 0 928 255 106 41 chr1 171870624 171871057 -70793296 - MLT1H LTR MaLR -13 536 1 27 49 0 0 chr1 171871168 171871209 -70793144 + AT_rich Low_complexity Low_complexity 1 41 0 224 234 13 117 chr1 171872231 171872308 -70792045 + L2 LINE L2 3204 3272 0 184 303 0 45 chr1 171873018 171873107 -70791246 + L2 LINE L2 996 1080 -2234 602 345 14 0 chr1 171873174 171873383 -70790970 - MIR SINE MIR -17 245 34 337 329 84 47 chr1 171873412 171873626 -70790727 + L2 LINE L2 1119 1324 -1990 1150 173 85 88 chr1 171873626 171874001 -70790352 - MLT1A2 LTR MaLR 0 374 1 337 329 84 47 chr1 171874001 171874251 -70790102 + L2 LINE L2 1324 1600 -1714 920 8 24 16 chr1 171875150 171875276 -70789077 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 228 35 0 0 chr1 171876515 171876544 -70787809 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 218 323 15 0 chr1 171877613 171877678 -70786675 - L2 LINE L2 -8 3305 3240 888 199 23 77 chr1 171878293 171878514 -70785839 + MER63A DNA MER1_type 1 209 -1 21 57 0 0 chr1 171880728 171880763 -70783590 + AT_rich Low_complexity Low_complexity 1 35 0 201 240 40 0 chr1 171883121 171883171 -70781182 + (TATG)n Simple_repeat Simple_repeat 1 52 0 31 44 0 0 chr1 171884026 171884071 -70780282 + AT_rich Low_complexity Low_complexity 1 45 0 310 286 87 32 chr1 171884716 171884842 -70779511 + L2 LINE L2 3180 3312 -1 7806 130 43 80 chr1 171884999 171885689 -70778664 + L1MA6 LINE L1 3687 4401 -1899 780 243 33 0 chr1 171885689 171885900 -70778453 - MER8 DNA MER2_type -2 343 4 7806 130 43 80 chr1 171885900 171887717 -70776636 + L1MA6 LINE L1 4401 6300 0 184 238 48 60 chr1 171887969 171888053 -70776300 + MIR SINE MIR 118 200 -62 404 389 52 8 chr1 171888838 171889090 -70775263 - L2 LINE L2 -421 2893 2631 263 296 114 75 chr1 171889095 171889535 -70774818 - MLT1J LTR MaLR -11 500 44 818 302 62 27 chr1 171889596 171889964 -70774389 - L2 LINE L2 -718 2596 2216 254 329 272 0 chr1 171890898 171891056 -70773297 - MIR SINE MIR -61 201 1 274 324 28 66 chr1 171891081 171891294 -70773059 + L3 LINE CR1 1370 1574 -3 322 256 19 81 chr1 171892633 171892793 -70771560 + MIR SINE MIR 99 248 -14 263 314 103 30 chr1 171892923 171893159 -70771194 - MIR SINE MIR -3 259 13 204 273 136 36 chr1 171894894 171895004 -70769349 - L3b LINE CR1 -178 1405 1285 1570 53 0 0 chr1 171895500 171895688 -70768665 - AluY SINE Alu -19 292 105 255 267 124 36 chr1 171895921 171896169 -70768184 - L1ME LINE L1 -209 5912 5600 201 94 0 0 chr1 171896169 171896201 -70768152 + (CA)n Simple_repeat Simple_repeat 2 33 0 255 267 124 36 chr1 171896201 171896259 -70768094 - L1ME LINE L1 -521 5600 5549 216 0 0 0 chr1 171896443 171896467 -70767886 + (A)n Simple_repeat Simple_repeat 1 24 0 240 219 50 118 chr1 171896551 171896670 -70767683 + MIR SINE MIR 75 185 -77 281 361 91 56 chr1 171897828 171898202 -70766151 - L2 LINE L2 -19 3253 2867 300 323 96 73 chr1 171898462 171899090 -70765263 - L2 LINE L2 -946 2368 1727 223 330 135 20 chr1 171899115 171899315 -70765038 - L2 LINE L2 -1726 1588 1366 2545 46 0 3 chr1 171899382 171899688 -70764665 - AluY SINE Alu -6 305 1 1334 223 21 7 chr1 171899775 171900066 -70764287 + AluJo SINE Alu 1 295 -17 26 30 0 0 chr1 171900108 171900141 -70764212 + AT_rich Low_complexity Low_complexity 1 33 0 666 322 110 16 chr1 171900645 171901018 -70763335 - MLT1K LTR MaLR -4 584 177 22 0 0 0 chr1 171901826 171901848 -70762505 + AT_rich Low_complexity Low_complexity 1 22 0 2113 114 0 7 chr1 171902667 171902966 -70761387 - AluSx SINE Alu -15 297 1 200 278 0 0 chr1 171904791 171904845 -70759508 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 328 318 48 0 chr1 171904948 171905074 -70759279 + MIR SINE MIR 130 261 -1 825 94 0 0 chr1 171905608 171905725 -70758628 - L1PA13 LINE L1 0 6163 6047 2998 161 22 7 chr1 171906887 171907434 -70756919 + L1MB7 LINE L1 5621 6175 -9 194 269 13 77 chr1 171907444 171907522 -70756831 - L2 LINE L2 -44 3228 3156 1332 327 127 15 chr1 171909214 171910432 -70753921 - L2 LINE L2 -61 3252 1900 22 35 0 0 chr1 171912139 171912168 -70752185 + AT_rich Low_complexity Low_complexity 1 29 0 570 310 125 32 chr1 171912501 171912940 -70751413 + L1M4 LINE L1 2678 3157 -2989 22 0 0 0 chr1 171914289 171914311 -70750042 + AT_rich Low_complexity Low_complexity 1 22 0 2772 262 79 39 chr1 171914688 171916046 -70748307 - L2 LINE L2 0 3313 1912 44 35 0 0 chr1 171917751 171917809 -70746544 + AT_rich Low_complexity Low_complexity 1 58 0 186 133 0 0 chr1 171920540 171920570 -70743783 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1036 79 11 13 chr1 171921045 171921058 -70743295 + L1P2 LINE L1 5538 5550 -618 3424 33 17 0 chr1 171921058 171921479 -70742874 - L1PA4 LINE L1 -3 6152 5725 1036 79 11 13 chr1 171921479 171921641 -70742712 + L1PA4 LINE L1 5550 5716 -452 22 0 0 0 chr1 171922243 171922265 -70742088 + AT_rich Low_complexity Low_complexity 1 22 0 349 271 21 0 chr1 171922302 171922398 -70741955 + MER103 DNA DNA 51 148 -18 541 298 168 43 chr1 171923656 171924193 -70740160 + L2 LINE L2 1971 2574 -740 554 252 53 0 chr1 171924277 171924408 -70739945 + L2 LINE L2 3133 3270 -2 1175 117 0 0 chr1 171924432 171924595 -70739758 + AluSg/x SINE Alu 132 294 -18 290 279 0 0 chr1 171924785 171924853 -70739500 - MIR SINE MIR -174 88 21 326 283 33 0 chr1 171926676 171926768 -70737585 - MIR3 SINE MIR -47 161 67 187 356 0 0 chr1 171926781 171926826 -70737527 - L2 LINE L2 -18 3254 3210 550 351 40 30 chr1 171926919 171927247 -70737106 - MLT1K LTR MaLR -113 475 145 395 224 0 24 chr1 171927305 171927390 -70736963 - L2 LINE L2 0 3313 3231 191 340 52 41 chr1 171927542 171927639 -70736714 - MIR SINE MIR -118 144 47 569 248 53 8 chr1 171928154 171928287 -70736066 - MER63 DNA MER1_type -71 765 1 3013 171 82 46 chr1 171928462 171929245 -70735108 - L1MC4 LINE L1 -207 7835 7025 2985 112 61 1 chr1 171929247 171929701 -70734652 - MER1A DNA MER1_type 0 529 1 677 232 30 24 chr1 171929712 171929880 -70734473 - L1MC4 LINE L1 -1026 7016 6848 651 292 46 4 chr1 171930067 171930307 -70734046 - MIR SINE MIR -5 257 8 3183 139 11 18 chr1 171930408 171930975 -70733378 - L1PA13 LINE L1 -7 6156 5594 22 0 0 0 chr1 171931139 171931161 -70733192 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 171932504 171932525 -70731828 + AT_rich Low_complexity Low_complexity 1 21 0 239 195 0 0 chr1 171934355 171934396 -70729957 - MER91 DNA MER1_type -12 184 144 184 222 25 62 chr1 171935726 171935807 -70728546 + L2 LINE L2 3158 3235 -78 14414 126 42 16 chr1 171936000 171936912 -70727441 - Tigger1 DNA MER2_type -1 2417 1529 1504 122 49 20 chr1 171936912 171937158 -70727195 - AluSx SINE Alu -8 304 52 14414 126 42 16 chr1 171937158 171938603 -70725750 - Tigger1 DNA MER2_type -889 1529 1 298 347 176 16 chr1 171939092 171939285 -70725068 + MIR SINE MIR 20 243 -19 283 303 28 109 chr1 171941815 171942026 -70722327 + MIR SINE MIR 20 213 -49 1960 90 72 4 chr1 171942667 171942945 -70721408 + AluSq SINE Alu 1 297 -16 237 220 0 0 chr1 171944090 171944140 -70720213 + L3 LINE CR1 1527 1576 -1 259 338 90 21 chr1 171944283 171944428 -70719925 + MER5A DNA MER1_type 13 167 -22 * 459 294 44 15 chr1 171944301 171944437 -70719916 - MER5A DNA MER1_type -25 164 25 39 60 0 0 chr1 171944493 171944560 -70719793 + AT_rich Low_complexity Low_complexity 1 67 0 761 281 169 9 chr1 171944758 171945189 -70719164 + L1ME4a LINE L1 5296 5795 -326 435 253 0 22 chr1 171945225 171945316 -70719037 - L2 LINE L2 0 3313 3225 223 337 59 89 chr1 171945362 171945531 -70718822 - MER5B DNA MER1_type -11 167 4 231 250 0 0 chr1 171945553 171945617 -70718736 + L1ME4a LINE L1 5945 6008 -113 43689 36 15 0 chr1 171945897 171951968 -70712385 - L1PA3 LINE L1 0 6155 1 681 280 144 31 chr1 171951972 171952326 -70712027 - MER20B DNA MER1_type -386 397 4 2466 63 0 13 chr1 171952648 171952950 -70711403 - AluY SINE Alu -13 298 1 242 309 48 0 chr1 171952950 171953025 -70711328 - L3b LINE CR1 -217 1366 1285 404 286 173 8 chr1 171953672 171953830 -70710523 - MIR SINE MIR -57 151 9 671 268 105 21 chr1 171954124 171954363 -70709990 + MIR SINE MIR 3 261 -1 3236 148 41 11 chr1 171955728 171956342 -70708011 - L1MC1 LINE L1 -1 6332 5701 1071 140 25 0 chr1 171956713 171956870 -70707483 + AluSc SINE Alu 134 294 -15 2830 71 3 11 chr1 171957174 171957556 -70706797 - L1PA7 LINE L1 -3 6151 5773 6169 65 40 1 chr1 171957556 171958603 -70705750 + L1P3 LINE L1 4436 5518 -636 1850 65 4 0 chr1 171958734 171958980 -70705373 + L1P3 LINE L1 5521 5767 -387 225 159 0 0 chr1 171960089 171960133 -70704220 + (TA)n Simple_repeat Simple_repeat 1 44 0 257 238 70 21 chr1 171961549 171961692 -70702661 + L1MC5 LINE L1 7696 7845 -116 1816 123 0 0 chr1 171961834 171962078 -70702275 + AluSg/x SINE Alu 67 310 0 324 215 13 38 chr1 171962735 171962814 -70701539 - MIR3 SINE MIR -124 84 8 1011 120 53 0 chr1 171964163 171964313 -70700040 + AluSp/q SINE Alu 155 312 -1 794 266 58 0 chr1 171964964 171965171 -70699182 - L2 LINE L2 -1 3312 3094 1097 83 0 0 chr1 171965294 171965426 -70698927 + AluY SINE Alu 1 132 -179 2126 114 7 7 chr1 171965430 171965728 -70698625 + AluY SINE Alu 1 298 -13 468 300 244 5 chr1 171965728 171966027 -70698326 - L2 LINE L2 -312 3001 2633 28 71 0 0 chr1 171966031 171966087 -70698266 + AT_rich Low_complexity Low_complexity 1 56 0 234 326 8 39 chr1 171969859 171969988 -70694365 - MIR SINE MIR -60 202 78 289 261 106 42 chr1 171971132 171971274 -70693079 - L2 LINE L2 0 3313 3163 183 129 0 0 chr1 171971752 171971783 -70692570 + (CACCC)n Simple_repeat Simple_repeat 5 35 0 266 248 34 17 chr1 171974341 171974458 -70689895 - Charlie2a DNA MER1_type -44 2818 2700 538 232 113 0 chr1 171974467 171974635 -70689718 - Charlie2a DNA MER1_type -1204 1658 1472 1924 120 0 0 chr1 171974691 171974950 -70689403 + AluSx SINE Alu 40 298 -14 441 267 67 33 chr1 171975071 171975281 -70689072 - Charlie2a DNA MER1_type -2645 217 1 393 22 0 0 chr1 171975402 171975448 -70688905 + (CA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr1 171979280 171979305 -70685048 + AT_rich Low_complexity Low_complexity 1 25 0 312 316 37 9 chr1 171979449 171979589 -70684764 - MIR SINE MIR -61 147 27 295 301 66 0 chr1 171979848 171979984 -70684369 - MER103 DNA DNA -2 164 20 742 234 104 5 chr1 171980763 171980955 -70683398 - MER58A DNA MER1_type -5 219 9 236 322 11 11 chr1 171981300 171981387 -70682966 + L2 LINE L2 2263 2349 -965 260 202 0 83 chr1 171981410 171981494 -70682859 + MLT1J LTR MaLR 104 180 -331 534 184 15 15 chr1 171981623 171981759 -70682594 + GA-rich Low_complexity Low_complexity 4 139 0 242 294 268 10 chr1 171981920 171982219 -70682134 + L2 LINE L2 2371 2746 -568 1120 298 51 35 chr1 171982269 171982640 -70681713 + MLT2F LTR ERVL 14 394 -269 1365 201 86 11 chr1 171982640 171982988 -70681365 + MLT1A2 LTR MaLR 1 374 0 1120 298 51 35 chr1 171982988 171983046 -70681307 + MLT2F LTR ERVL 394 450 -213 799 255 98 11 chr1 171983117 171983229 -70681124 + ERVL LTR ERVL 352 453 -5311 402 21 0 0 chr1 171983229 171983276 -70681077 + (CA)n Simple_repeat Simple_repeat 2 48 0 799 255 98 11 chr1 171983276 171983606 -70680747 + ERVL LTR ERVL 453 912 -4852 510 227 87 49 chr1 171983606 171983791 -70680562 + MER5C DNA MER1_type 133 324 0 336 310 41 28 chr1 171983797 171983942 -70680411 - MIR SINE MIR -87 175 29 1898 135 70 17 chr1 171984951 171985307 -70679046 + THE1C LTR MaLR 1 375 0 237 222 0 37 chr1 171985343 171985397 -70678956 - L2 LINE L2 0 3313 3262 21 36 0 0 chr1 171985455 171985483 -70678870 + AT_rich Low_complexity Low_complexity 1 28 0 355 308 33 8 chr1 171985566 171985686 -70678667 - MLT1J LTR MaLR -242 269 147 1757 145 62 24 chr1 171986039 171986411 -70677942 - MLT1B LTR MaLR -4 386 1 204 399 89 0 chr1 171986848 171987016 -70677337 - L2 LINE L2 -1869 1445 1263 1120 233 70 18 chr1 171987323 171987709 -70676644 - L1MB8 LINE L1 -1 6177 5772 731 153 15 29 chr1 171987711 171987848 -70676505 - AluJo SINE Alu -177 135 1 1659 179 70 26 chr1 171987859 171988555 -70675798 - L1MB8 LINE L1 -404 5774 5031 2482 62 7 0 chr1 171988555 171988859 -70675494 + AluY SINE Alu 1 306 -5 1659 179 70 26 chr1 171988859 171988894 -70675459 - L1MB8 LINE L1 -1147 5031 4999 812 102 0 55 chr1 171988898 171989025 -70675328 - AluSg/x SINE Alu -19 293 174 622 252 6 0 chr1 171989028 171989187 -70675166 - L1MB8 LINE L1 -1144 5002 4843 777 207 25 5 chr1 171989189 171989387 -70674966 - L1MB8 LINE L1 -1383 4763 4562 1292 211 7 51 chr1 171989437 171989731 -70674622 + AluJo SINE Alu 30 310 -2 380 321 62 57 chr1 171989771 171989980 -70674373 + MIR SINE MIR 13 222 -40 25 0 0 0 chr1 171993067 171993092 -70671261 + AT_rich Low_complexity Low_complexity 1 25 0 1729 169 76 14 chr1 171993198 171993565 -70670788 - MLT1B LTR MaLR 0 390 1 272 194 21 118 chr1 171993615 171993708 -70670645 + L2 LINE L2 3230 3313 0 3461 101 20 6 chr1 171994793 171995299 -70669054 + MER75 DNA T2_type 2 514 0 521 283 106 34 chr1 171995553 171995790 -70668563 - MIR SINE MIR 0 262 9 205 191 0 0 chr1 171997562 171997604 -70666749 - MIR SINE MIR -66 142 101 1754 201 96 9 chr1 171997907 171998335 -70666018 + MLT1C LTR MaLR 3 467 0 188 350 55 55 chr1 171998430 171998613 -70665740 - L3 LINE CR1 -1360 217 35 229 283 92 13 chr1 171999072 171999224 -70665129 - L1ME LINE L1 -386 5735 5572 2190 138 0 0 chr1 171999429 171999733 -70664620 - AluSp SINE Alu -8 305 2 5976 59 4 12 chr1 171999747 172000525 -70663828 + L1PA5 LINE L1 5382 6153 -1 189 354 61 12 chr1 172000545 172000627 -70663726 + L2 LINE L2 3187 3272 0 363 319 65 49 chr1 172001660 172001845 -70662508 - MIR SINE MIR -61 201 14 350 125 0 0 chr1 172002127 172002183 -70662170 + AluJb SINE Alu 90 145 -157 1535 282 90 15 chr1 172002319 172002908 -70661445 - MLT2F LTR ERVL 0 663 31 24 0 0 0 chr1 172004387 172004411 -70659942 + AT_rich Low_complexity Low_complexity 1 24 0 14273 24 1 0 chr1 172004569 172007011 -70657342 + L1PA4 LINE L1 3707 6152 -3 258 305 103 37 chr1 172007330 172007505 -70656848 - MIR3 SINE MIR -68 140 4 23 0 0 0 chr1 172007659 172007682 -70656671 + AT_rich Low_complexity Low_complexity 1 23 0 323 302 58 29 chr1 172007944 172008083 -70656270 - L2 LINE L2 -583 2731 2589 1765 209 74 45 chr1 172008246 172008829 -70655524 - MER92B LTR ERV1 -7 629 30 868 311 45 26 chr1 172009140 172009603 -70654750 - L2 LINE L2 -1 3312 2841 327 218 18 73 chr1 172009676 172009786 -70654567 - MIR SINE MIR -118 144 41 932 189 16 0 chr1 172010092 172010282 -70654071 + L1PBa LINE L1 3 195 -6668 3136 128 4 15 chr1 172010287 172011003 -70653350 + L1PBa LINE L1 636 1492 -5371 1491 79 68 32 chr1 172011005 172011284 -70653069 - L1PBa LINE L1 -4681 2182 1894 * 2147 222 8 24 chr1 172011281 172011916 -70652437 + L1 LINE L1 2994 3618 -2528 3723 113 19 57 chr1 172012018 172012648 -70651705 + MER41A-int LTR ERV1 1 606 -5340 354 23 0 0 chr1 172012648 172012691 -70651662 + (TC)n Simple_repeat Simple_repeat 1 43 0 11455 157 79 55 chr1 172012692 172016164 -70648189 + MER41A-int LTR ERV1 2765 5944 -2 3765 84 59 0 chr1 172016164 172016687 -70647666 + MER41A LTR ERV1 1 554 0 356 279 64 31 chr1 172016687 172016840 -70647513 - MIR SINE MIR -65 143 20 344 301 63 30 chr1 172017857 172018078 -70646275 + MIR SINE MIR 18 241 -21 2403 158 95 0 chr1 172018804 172019265 -70645088 + MLT1D LTR MaLR 1 505 0 374 165 67 103 chr1 172019323 172019384 -70644969 + MER53 DNA DNA 1 63 -126 1712 186 45 0 chr1 172019384 172019675 -70644678 + AluJo SINE Alu 3 306 -6 374 165 67 103 chr1 172019675 172019807 -70644546 + MER53 DNA DNA 63 187 -2 183 263 128 83 chr1 172020197 172020330 -70644023 + L2 LINE L2 2305 2443 -871 723 279 114 25 chr1 172020859 172020955 -70643398 + MLT1J1 LTR MaLR 5 91 -355 1244 199 68 65 chr1 172020955 172021216 -70643137 - MLT2D LTR ERVL 0 414 150 360 0 0 0 chr1 172021216 172021256 -70643097 + (CA)n Simple_repeat Simple_repeat 2 41 0 1244 199 68 65 chr1 172021256 172021407 -70642946 - MLT2D LTR ERVL -264 150 1 723 279 114 25 chr1 172021407 172021712 -70642641 + MLT1J1 LTR MaLR 91 442 -4 915 182 81 0 chr1 172022132 172022330 -70642023 - L1PA16 LINE L1 -7 6159 5946 262 258 113 38 chr1 172022385 172022544 -70641809 - HAL1 LINE L1 -58 2449 2279 300 326 20 0 chr1 172022769 172022867 -70641486 - HAL1 LINE L1 -546 1961 1862 566 250 66 62 chr1 172023309 172023553 -70640800 + MLT1J2 LTR MaLR 64 308 -142 545 264 0 0 chr1 172023581 172023691 -70640662 - MER81 DNA DNA 0 114 5 395 176 47 12 chr1 172023721 172023806 -70640547 + MLT1J2 LTR MaLR 362 449 -1 665 276 44 40 chr1 172025854 172026082 -70638271 + MIR SINE MIR 18 246 -16 180 0 0 0 chr1 172026098 172026118 -70638235 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2485 64 0 0 chr1 172026195 172026492 -70637861 + AluY SINE Alu 15 311 0 1506 164 12 91 chr1 172028488 172028818 -70635535 - AluJo SINE Alu -4 308 5 653 263 57 24 chr1 172028824 172029033 -70635320 - MIR SINE MIR -39 223 8 21 0 0 0 chr1 172029218 172029239 -70635114 + AT_rich Low_complexity Low_complexity 1 21 0 521 283 40 23 chr1 172029517 172029690 -70634663 - MIR3 SINE MIR -19 189 14 2692 225 73 53 chr1 172029914 172031114 -70633239 - L1MC5 LINE L1 -105 7856 6633 2056 144 13 0 chr1 172031344 172031642 -70632711 - AluSx SINE Alu -10 302 1 25 51 0 0 chr1 172031823 172031862 -70632491 + AT_rich Low_complexity Low_complexity 1 39 0 365 303 102 40 chr1 172032010 172032333 -70632020 - MLT1J LTR MaLR -49 462 120 1903 149 35 35 chr1 172032627 172033002 -70631351 - THE1C LTR MaLR 0 375 1 9611 105 40 27 chr1 172033005 172033650 -70630703 - THE1C-int LTR MaLR -3 1577 942 3925 99 79 2 chr1 172033650 172034244 -70630109 + MER51C LTR ERV1 1 640 0 9611 105 40 27 chr1 172034244 172035155 -70629198 - THE1C-int LTR MaLR -638 942 1 1869 165 35 37 chr1 172035155 172035531 -70628822 - THE1C LTR MaLR 0 375 1 511 309 40 46 chr1 172035566 172035890 -70628463 + L1M4 LINE L1 4022 4343 -1803 462 238 23 57 chr1 172036405 172036564 -70627789 + LTR41 LTR ERVL 39 186 -587 306 289 58 10 chr1 172036930 172037034 -70627319 + L1ME4a LINE L1 5974 6082 -39 2104 129 48 28 chr1 172037047 172037404 -70626949 - THE1B LTR MaLR 0 364 1 11775 98 2 1 chr1 172037406 172038981 -70625372 - THE1B-int LTR MaLR -2 1578 1 2171 106 50 34 chr1 172038982 172039339 -70625014 - THE1B LTR MaLR -1 363 1 1626 138 68 0 chr1 172039339 172039635 -70624718 + L1MC1 LINE L1 5290 5605 -728 * 2097 158 101 25 chr1 172039631 172040118 -70624235 + L1MC1 LINE L1 5808 6331 -2 29 28 0 0 chr1 172040140 172040176 -70624177 + AT_rich Low_complexity Low_complexity 1 36 0 398 331 20 0 chr1 172040182 172040330 -70624023 - L2 LINE L2 0 3313 3163 184 213 197 66 chr1 172040333 172040455 -70623898 - L2 LINE L2 -808 2506 2369 2739 7 0 0 chr1 172040788 172041086 -70623267 - AluY SINE Alu -13 298 1 1352 120 50 0 chr1 172041546 172041746 -70622607 - AluSg/x SINE Alu -2 310 101 1384 203 72 29 chr1 172042180 172042529 -70621824 + MER67A LTR ERV1 180 543 0 1405 157 108 42 chr1 172042531 172042863 -70621490 + MLT1D LTR MaLR 152 505 0 35 0 0 0 chr1 172044725 172044760 -70619593 + AT_rich Low_complexity Low_complexity 1 35 0 40538 53 3 1 chr1 172045008 172051137 -70613216 - L1PA4 LINE L1 -7 6148 11 441 0 0 0 chr1 172051438 172051487 -70612866 + (TAA)n Simple_repeat Simple_repeat 3 51 0 316 314 44 48 chr1 172051680 172051909 -70612444 + MER90 LTR ERV1 386 613 -1 277 252 428 15 chr1 172052158 172052289 -70612064 + MER5A DNA MER1_type 4 188 -1 388 304 125 43 chr1 172052294 172052663 -70611690 + L2 LINE L2 2915 3313 0 2028 125 17 3 chr1 172052872 172053169 -70611184 - AluSq SINE Alu -12 301 1 341 238 24 36 chr1 172053173 172053257 -70611096 - MER5B DNA MER1_type -20 158 76 345 291 47 41 chr1 172053446 172053618 -70610735 - L1MEc LINE L1 -6221 175 3 435 290 44 30 chr1 172053634 172053861 -70610492 - L1MDa LINE L1 -3934 2606 2404 3686 58 0 4 chr1 172053864 172054332 -70610021 - L1PA7 LINE L1 0 6154 5689 924 248 101 17 chr1 172054410 172054848 -70609505 - MLT1D LTR MaLR 0 505 6 370 308 138 61 chr1 172055046 172055475 -70608878 - HAL1 LINE L1 -742 1765 1304 4509 173 38 13 chr1 172055503 172055739 -70608614 + L1MB5 LINE L1 4974 5203 -971 468 51 0 0 chr1 172055739 172055798 -70608555 + (TA)n Simple_repeat Simple_repeat 2 60 0 4509 173 38 13 chr1 172055798 172056718 -70607635 + L1MB5 LINE L1 5203 6166 -8 2057 223 209 117 chr1 172056747 172056999 -70607354 + L1MDa LINE L1 19 246 -6294 290 65 0 22 chr1 172056999 172057045 -70607308 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2057 223 209 117 chr1 172057045 172057568 -70606785 + L1MDa LINE L1 246 720 -5820 2496 50 0 3 chr1 172057568 172057866 -70606487 + AluY SINE Alu 1 297 -14 1490 83 0 39 chr1 172057867 172058071 -70606282 + AluSx SINE Alu 1 196 -116 2057 223 209 117 chr1 172058071 172058144 -70606209 + L1MDa LINE L1 720 785 -5755 503 197 33 16 chr1 172058144 172058266 -70606087 + AluSx SINE Alu 186 309 0 2057 223 209 117 chr1 172058266 172058489 -70605864 + L1MDa LINE L1 785 986 -5554 252 100 0 0 chr1 172058489 172058529 -70605824 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2057 223 209 117 chr1 172058529 172058843 -70605510 + L1MDa LINE L1 986 1669 -4871 * 3114 206 60 24 chr1 172058839 172059725 -70604628 + L1MD1 LINE L1 5042 5959 -283 2282 84 20 3 chr1 172059725 172060024 -70604329 + AluY SINE Alu 1 304 -7 3114 206 60 24 chr1 172060024 172060116 -70604237 + L1MD1 LINE L1 5959 6046 -196 1740 168 5 73 chr1 172060120 172060433 -70603920 + MER2 DNA MER2_type 1 287 -58 1460 97 40 28 chr1 172060433 172060681 -70603672 - L1MA2 LINE L1 -8 6296 6046 1740 168 5 73 chr1 172060681 172060737 -70603616 + MER2 DNA MER2_type 287 345 0 331 264 0 11 chr1 172060740 172060831 -70603522 + L1MD2 LINE L1 6052 6141 -218 324 127 15 64 chr1 172060830 172060933 -70603420 + L1MC4a LINE L1 6194 7711 -75 * 293 238 50 0 chr1 172060943 172061023 -70603330 + L1MD3 LINE L1 7893 7976 -19 680 209 32 25 chr1 172061608 172061766 -70602587 + MER74B LTR ERVL 55 213 -409 312 284 167 6 chr1 172061866 172062028 -70602325 + L2 LINE L2 2918 3105 -208 2176 106 0 10 chr1 172062114 172062415 -70601938 + AluSx SINE Alu 1 298 -14 1621 164 18 11 chr1 172062418 172062704 -70601649 - MLT1B LTR MaLR -36 354 67 999 183 178 13 chr1 172062764 172063086 -70601267 + MER34C LTR ERV1 4 485 -246 386 238 20 10 chr1 172063241 172063342 -70601011 + MER34 LTR ERV1 441 542 0 2076 100 0 18 chr1 172063800 172064081 -70600272 + AluSc SINE Alu 21 296 -13 461 194 0 81 chr1 172064740 172064880 -70599473 + L1M4b LINE L1 11 448 -6407 3312 158 62 108 chr1 172064892 172065387 -70598966 + L1MB7 LINE L1 5269 5703 -481 2233 86 4 0 chr1 172065387 172065695 -70598658 + AluSc SINE Alu 1 309 0 3312 158 62 108 chr1 172065695 172066147 -70598206 + L1MB7 LINE L1 5703 6174 -10 806 255 33 41 chr1 172066164 172066435 -70597918 + MER46C DNA MER2_type 68 336 -2 2437 93 0 0 chr1 172066688 172067047 -70597306 - AluSx SINE Alu 0 359 1 960 183 21 16 chr1 172067575 172067761 -70596592 + MER5A DNA MER1_type 3 189 0 298 293 10 20 chr1 172067795 172067894 -70596459 - MER103 DNA DNA -18 148 51 2743 3 0 13 chr1 172068341 172068645 -70595708 - AluYb8 SINE Alu -18 300 1 212 271 43 43 chr1 172069181 172069251 -70595102 - L2 LINE L2 -2 3311 3242 3077 209 90 28 chr1 172069276 172069440 -70594913 + L1MC4a LINE L1 6890 7042 -766 2175 127 0 7 chr1 172069440 172069747 -70594606 + AluSg SINE Alu 1 305 -5 3077 209 90 28 chr1 172069747 172070437 -70593916 + L1MC4a LINE L1 7042 7797 -11 201 74 0 0 chr1 172070977 172071004 -70593349 + (TG)n Simple_repeat Simple_repeat 1 27 0 189 370 63 48 chr1 172071289 172071478 -70592875 - L2 LINE L2 -360 2954 2763 512 261 56 35 chr1 172072117 172072461 -70591892 - MLT1J2 LTR MaLR 0 450 29 1520 197 14 40 chr1 172072653 172073024 -70591329 - MLT1A1 LTR MaLR 0 365 5 186 309 0 0 chr1 172073677 172073719 -70590634 - L3 LINE CR1 -294 1283 1242 423 314 189 6 chr1 172073784 172073953 -70590400 - MIR SINE MIR 0 262 63 214 243 14 29 chr1 172076373 172076443 -70587910 + CT-rich Low_complexity Low_complexity 4 72 0 2306 69 20 3 chr1 172077026 172077329 -70587024 + AluY SINE Alu 1 308 -3 269 216 40 40 chr1 172077582 172077656 -70586697 - L2 LINE L2 -1 3312 3239 206 333 9 79 chr1 172077765 172077879 -70586474 + L2 LINE L2 3192 3297 -16 550 282 27 80 chr1 172079134 172079319 -70585034 + MIR SINE MIR 15 183 -79 1940 98 84 0 chr1 172079319 172079594 -70584759 + AluSc SINE Alu 1 298 -11 550 282 27 80 chr1 172079594 172079670 -70584683 + MIR SINE MIR 183 262 0 307 326 35 28 chr1 172080102 172080246 -70584107 - MIR3 SINE MIR -61 147 3 509 215 37 30 chr1 172080527 172080662 -70583691 - L1M4 LINE L1 -1834 4312 4177 362 350 9 16 chr1 172080956 172081161 -70583192 - MLT1J LTR MaLR -244 267 27 1158 129 0 0 chr1 172082002 172082165 -70582188 + AluSq SINE Alu 137 299 -14 271 264 50 62 chr1 172083124 172083312 -70581041 + MIR SINE MIR 7 190 -68 2397 96 0 3 chr1 172083380 172083693 -70580660 - AluSq SINE Alu 0 313 2 195 42 0 0 chr1 172086085 172086109 -70578244 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1744 172 3 7 chr1 172086506 172086814 -70577539 + AluSx SINE Alu 1 307 0 2085 100 14 0 chr1 172086892 172087172 -70577181 - AluSx SINE Alu -6 306 23 181 116 23 23 chr1 172087278 172087321 -70577032 + (TA)n Simple_repeat Simple_repeat 1 43 0 256 282 0 0 chr1 172087904 172087975 -70576378 + MER94 DNA DNA 1 71 -63 338 289 160 0 chr1 172088014 172088170 -70576183 + MIR SINE MIR 70 250 -12 225 292 65 0 chr1 172091537 172091665 -70572688 - MIR SINE MIR -7 201 62 438 323 39 13 chr1 172092153 172092308 -70572045 - MIR3 SINE MIR -29 179 21 231 114 0 0 chr1 172093227 172093262 -70571091 + (TCC)n Simple_repeat Simple_repeat 2 36 0 328 217 84 0 chr1 172093709 172093792 -70570561 - MIR SINE MIR -42 220 131 376 271 78 31 chr1 172094532 172094661 -70569692 - MIR SINE MIR -70 192 58 728 287 164 74 chr1 172095091 172095939 -70568414 + L1M2 LINE L1 529 1452 -5397 371 309 92 114 chr1 172095948 172096669 -70567684 + L1M2 LINE L1 654 1358 -5491 34 0 0 0 chr1 172098558 172098592 -70565761 + AT_rich Low_complexity Low_complexity 1 34 0 216 306 92 20 chr1 172098796 172098894 -70565459 - MIR3 SINE MIR -23 185 81 1737 147 3 62 chr1 172098902 172099208 -70565145 - AluJb SINE Alu -24 288 1 651 109 33 0 chr1 172100244 172100336 -70564017 - U6 snRNA snRNA -12 95 1 22 0 0 0 chr1 172100409 172100431 -70563922 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr1 172101672 172101697 -70562656 + AT_rich Low_complexity Low_complexity 1 25 0 1495 152 19 16 chr1 172103323 172103579 -70560774 + AluJb SINE Alu 32 288 -24 183 152 0 0 chr1 172103614 172103660 -70560693 + A-rich Low_complexity Low_complexity 1 46 0 301 290 20 30 chr1 172103687 172103787 -70560566 - L2 LINE L2 0 3313 3215 1300 272 65 25 chr1 172103826 172104372 -70559981 + L2 LINE L2 2474 3054 -259 818 274 35 16 chr1 172105036 172105291 -70559062 + MIR SINE MIR 3 262 0 1386 82 0 0 chr1 172106579 172106761 -70557592 + AluSg/x SINE Alu 124 305 -4 1607 158 33 30 chr1 172107393 172107696 -70556657 - AluJo SINE Alu -8 304 1 184 415 54 23 chr1 172108416 172108546 -70555807 - L2 LINE L2 0 3272 3139 637 260 82 10 chr1 172109827 172110023 -70554330 + MIR SINE MIR 4 213 -49 728 285 59 43 chr1 172110253 172110506 -70553847 - MIR SINE MIR -5 257 1 279 265 54 82 chr1 172112459 172112606 -70551747 + MIR SINE MIR 72 214 -48 214 133 0 67 chr1 172112617 172112724 -70551629 + (TAAAA)n Simple_repeat Simple_repeat 1 99 0 283 274 152 56 chr1 172112928 172113125 -70551228 + MIR SINE MIR 1 216 -46 189 0 0 0 chr1 172113185 172113206 -70551147 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 210 143 0 0 chr1 172113212 172113247 -70551106 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr1 172114079 172114100 -70550253 + AT_rich Low_complexity Low_complexity 1 21 0 224 160 0 96 chr1 172114310 172114404 -70549949 + A-rich Low_complexity Low_complexity 4 88 0 202 324 0 0 chr1 172114512 172114586 -70549767 + (CAT)n Simple_repeat Simple_repeat 3 76 0 198 136 0 0 chr1 172114599 172114643 -70549710 + (CAT)n Simple_repeat Simple_repeat 3 46 0 22 56 0 0 chr1 172115066 172115102 -70549251 + AT_rich Low_complexity Low_complexity 1 36 0 870 65 41 22 chr1 172115399 172115752 -70548601 + (TA)n Simple_repeat Simple_repeat 1 360 0 209 195 0 0 chr1 172115878 172115919 -70548434 + (CAT)n Simple_repeat Simple_repeat 1 41 0 1842 132 10 10 chr1 172116196 172116491 -70547862 - AluSq SINE Alu -18 295 1 982 127 218 20 chr1 172116677 172116929 -70547424 - MER33 DNA MER1_type 0 324 23 1494 156 91 73 chr1 172117751 172118091 -70546262 - MER46B DNA MER2_type -15 221 1 369 263 246 22 chr1 172118320 172118499 -70545854 + MIR SINE MIR 37 255 -7 3512 138 48 43 chr1 172118519 172119187 -70545166 + LTR51 LTR ERV1 1 671 0 275 328 51 14 chr1 172119263 172119458 -70544895 - MIR3 SINE MIR -19 243 1 33 0 0 0 chr1 172120107 172120140 -70544213 + AT_rich Low_complexity Low_complexity 1 33 0 248 264 90 45 chr1 172125748 172125926 -70538427 + L1ME4a LINE L1 5733 5918 -203 275 298 57 32 chr1 172126872 172126996 -70537357 - MIR SINE MIR -90 172 46 809 199 160 6 chr1 172127040 172127221 -70537132 - MER58C DNA MER1_type -6 209 1 773 162 14 0 chr1 172127603 172127745 -70536608 + BC200 scRNA scRNA 1 144 -56 263 326 38 30 chr1 172128783 172128915 -70535438 - MIR SINE MIR -129 133 1 1978 151 3 0 chr1 172128994 172129292 -70535061 - AluJo SINE Alu -13 299 1 22 56 0 0 chr1 172129380 172129416 -70534937 + AT_rich Low_complexity Low_complexity 1 36 0 309 248 95 29 chr1 172130127 172130232 -70534121 - HAL1b LINE L1 -34 1314 1203 2428 53 0 13 chr1 172130534 172130834 -70533519 - AluY SINE Alu -15 296 1 22 0 0 0 chr1 172130835 172130857 -70533496 + AT_rich Low_complexity Low_complexity 1 22 0 785 270 142 9 chr1 172131515 172131741 -70532612 - MIR SINE MIR -4 258 3 1004 148 0 28 chr1 172132712 172132888 -70531465 + AluSg/x SINE Alu 132 302 -8 22 35 0 0 chr1 172136200 172136229 -70528124 + AT_rich Low_complexity Low_complexity 1 29 0 4095 79 29 6 chr1 172136334 172137340 -70527013 + MER11A LTR ERVK 1 1266 0 1619 133 117 39 chr1 172137559 172137868 -70526485 - MER47A DNA MER2_type -1 365 33 2144 85 6 28 chr1 172137932 172138250 -70526103 + AluY SINE Alu 1 311 0 2278 256 88 12 chr1 172139031 172139770 -70524583 + L1MEc LINE L1 48 842 -5554 25 0 0 0 chr1 172140364 172140389 -70523964 + AT_rich Low_complexity Low_complexity 1 25 0 2310 85 3 3 chr1 172141648 172141955 -70522398 + AluY SINE Alu 1 307 -4 1505 96 65 4 chr1 172142489 172142718 -70521635 + MER75B DNA T2_type 1 243 0 24 53 0 0 chr1 172142839 172142877 -70521476 + AT_rich Low_complexity Low_complexity 1 38 0 2009 143 0 7 chr1 172143455 172143762 -70520591 - AluSx SINE Alu -7 305 1 269 236 14 0 chr1 172144660 172144732 -70519621 + HsTC2 DNA Tc2 1826 1898 0 231 217 43 58 chr1 172145566 172145609 -70518744 + L2 LINE L2 3196 3239 -33 1503 186 10 27 chr1 172145609 172145904 -70518449 - AluJo SINE Alu -22 290 1 231 217 43 58 chr1 172145904 172145929 -70518424 + L2 LINE L2 3239 3263 -9 28 71 0 0 chr1 172150581 172150637 -70513716 + AT_rich Low_complexity Low_complexity 1 56 0 13924 145 42 45 chr1 172152110 172153661 -70510692 + Tigger2 DNA MER2_type 1 1542 -1176 2036 120 10 0 chr1 172153661 172153953 -70510400 - AluSx SINE Alu -17 295 1 13924 145 42 45 chr1 172153953 172155127 -70509226 + Tigger2 DNA MER2_type 1542 2718 0 21 0 0 0 chr1 172155318 172155339 -70509014 + AT_rich Low_complexity Low_complexity 1 21 0 2254 99 0 3 chr1 172155620 172155922 -70508431 - AluSg1 SINE Alu -6 303 3 247 309 75 0 chr1 172156140 172156234 -70508119 - L1ME LINE L1 -373 5748 5648 1632 192 10 3 chr1 172156889 172157181 -70507172 + AluJb SINE Alu 1 294 -18 4581 214 37 11 chr1 172157266 172158407 -70505946 - L1 LINE L1 -934 5212 4043 310 321 102 51 chr1 172158595 172158910 -70505443 - L1ME LINE L1 -1310 4836 4506 198 325 52 39 chr1 172159267 172159344 -70505009 + L2 LINE L2 3234 3311 -2 25 0 0 0 chr1 172160183 172160208 -70504145 + AT_rich Low_complexity Low_complexity 1 25 0 1828 150 34 0 chr1 172160833 172161127 -70503226 + AluSx SINE Alu 1 304 -8 617 100 0 0 chr1 172161191 172161281 -70503072 + 5S rRNA rRNA 1 90 -31 25 0 0 0 chr1 172161441 172161466 -70502887 + AT_rich Low_complexity Low_complexity 1 25 0 205 345 0 35 chr1 172161695 172161753 -70502600 - MIR SINE MIR -131 77 22 22 0 0 0 chr1 172162229 172162251 -70502102 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr1 172164554 172164583 -70499770 + (TG)n Simple_repeat Simple_repeat 1 29 0 315 283 71 26 chr1 172165369 172165482 -70498871 - MIR3 SINE MIR -6 202 85 1401 151 129 50 chr1 172165553 172165871 -70498482 + MER2 DNA MER2_type 1 343 -1 2450 73 0 0 chr1 172166324 172166624 -70497729 + AluY SINE Alu 1 300 -11 909 211 62 47 chr1 172167182 172167438 -70496915 + MIR SINE MIR 2 261 -1 270 304 80 48 chr1 172167462 172167587 -70496766 + L2 LINE L2 3144 3272 0 2402 75 3 0 chr1 172167722 172168028 -70496325 + AluSq SINE Alu 1 307 -6 432 286 8 8 chr1 172168070 172168189 -70496164 + MER117 DNA MER1_type 1 119 -78 2331 37 17 3 chr1 172169890 172170184 -70494169 - AluY SINE Alu -13 298 1 1518 141 13 73 chr1 172170685 172170998 -70493355 + AluJo SINE Alu 5 298 -14 184 225 113 84 chr1 172171101 172171172 -70493181 - L2 LINE L2 -1867 1447 1375 213 335 66 7 chr1 172171761 172171913 -70492440 - L2 LINE L2 -787 2527 2367 740 111 0 0 chr1 172172007 172172115 -70492238 + L1PA8A LINE L1 5985 6092 -39 204 135 0 0 chr1 172172229 172172266 -70492087 + (TA)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr1 172172306 172172330 -70492023 + AT_rich Low_complexity Low_complexity 1 24 0 2115 99 0 3 chr1 172172333 172172616 -70491737 + AluSx SINE Alu 21 302 -10 1682 178 99 10 chr1 172172635 172173028 -70491325 - MSTB1 LTR MaLR 0 432 5 297 0 0 0 chr1 172173130 172173163 -70491190 + (CA)n Simple_repeat Simple_repeat 2 34 0 426 291 55 14 chr1 172173602 172173822 -70490531 + L1ME LINE L1 5578 5806 -315 201 264 136 58 chr1 172174017 172174172 -70490181 - L2 LINE L2 -212 3060 2894 22 80 0 0 chr1 172174811 172174861 -70489492 + AT_rich Low_complexity Low_complexity 1 50 0 303 286 16 0 chr1 172174902 172174965 -70489388 - MER91 DNA MER1_type 0 190 127 749 175 0 0 chr1 172176765 172176885 -70487468 + FLAM_A SINE Alu 10 129 -13 204 217 0 0 chr1 172177962 172178008 -70486345 + (TA)n Simple_repeat Simple_repeat 1 46 0 1506 187 0 58 chr1 172178351 172178661 -70485692 - AluJb SINE Alu -20 292 1 212 313 0 0 chr1 172179798 172179878 -70484475 + T-rich Low_complexity Low_complexity 1 80 0 4238 90 2 3 chr1 172180501 172181089 -70483264 + L1PA13 LINE L1 5304 5890 -273 1295 120 0 6 chr1 172181089 172181272 -70483081 + AluSq SINE Alu 1 182 -131 2082 125 0 10 chr1 172181275 172181588 -70482765 + AluSx SINE Alu 1 310 -2 1613 94 90 0 chr1 172181588 172181843 -70482510 + L1PA13 LINE L1 5881 6158 -5 618 289 102 5 chr1 172182084 172182281 -70482072 - MER58A DNA MER1_type 0 224 9 21 57 0 0 chr1 172182571 172182606 -70481747 + AT_rich Low_complexity Low_complexity 1 35 0 232 271 0 0 chr1 172182804 172182852 -70481501 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 2330 60 7 0 chr1 172183662 172183946 -70480407 - AluY SINE Alu -25 286 1 23 33 0 0 chr1 172183954 172183984 -70480369 + AT_rich Low_complexity Low_complexity 1 30 0 1857 163 3 3 chr1 172184880 172185180 -70479173 + AluJo SINE Alu 1 300 -12 423 0 0 0 chr1 172185274 172185321 -70479032 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 280 228 43 0 chr1 172185321 172185413 -70478940 + (TA)n Simple_repeat Simple_repeat 1 96 0 1281 161 30 4 chr1 172186020 172186250 -70478103 - MER46A DNA MER2_type 0 236 1 1435 163 17 23 chr1 172187768 172188068 -70476285 - AluJb SINE Alu -14 298 1 2652 32 3 0 chr1 172188539 172188849 -70475504 - AluY SINE Alu 0 311 1 1692 77 0 0 chr1 172188931 172189139 -70475214 - AluSq SINE Alu -105 208 1 181 333 122 11 chr1 172189919 172190009 -70474344 + MIR3 SINE MIR 9 108 -100 437 173 21 7 chr1 172190022 172190174 -70474179 + CT-rich Low_complexity Low_complexity 1 154 0 2151 170 46 2 chr1 172190175 172190629 -70473724 - L1 LINE L1 -2247 3899 3426 211 139 28 0 chr1 172190631 172190667 -70473686 + CT-rich Low_complexity Low_complexity 4 40 0 713 141 0 8 chr1 172190747 172190875 -70473478 + (TTTC)n Simple_repeat Simple_repeat 1 127 0 294 172 11 35 chr1 172190867 172190954 -70473399 + CT-rich Low_complexity Low_complexity 5 89 0 * 1203 150 0 67 chr1 172190957 172191197 -70473156 - AluJo SINE Alu -3 309 86 567 240 24 0 chr1 172191206 172191331 -70473022 - AluJo SINE Alu -56 256 129 477 227 118 8 chr1 172191334 172191453 -70472900 - AluJo SINE Alu -170 132 1 295 325 86 0 chr1 172191456 172191573 -70472780 + MIR SINE MIR 124 250 -12 29 47 0 0 chr1 172191782 172191825 -70472528 + AT_rich Low_complexity Low_complexity 1 43 0 697 128 16 32 chr1 172191825 172191950 -70472403 - L1MA1 LINE L1 0 6302 6180 23 0 0 0 chr1 172192700 172192723 -70471630 + AT_rich Low_complexity Low_complexity 1 23 0 2300 95 3 0 chr1 172194117 172194421 -70469932 - AluSx SINE Alu -5 307 3 13968 128 40 23 chr1 172195793 172195987 -70468366 + Tigger1 DNA MER2_type 1 190 -2228 1403 162 31 112 chr1 172195987 172196308 -70468045 - AluJb SINE Alu -17 295 1 13968 128 40 23 chr1 172196308 172198486 -70465867 + Tigger1 DNA MER2_type 190 2414 -4 809 287 157 17 chr1 172198586 172199046 -70465307 + MLT1H1 LTR MaLR 32 555 0 353 299 82 0 chr1 172199231 172199365 -70464988 + MLT1H1-int LTR MaLR 400 544 -827 304 308 59 61 chr1 172199876 172200175 -70464178 + MLT1H1-int LTR MaLR 1028 1697 -38 843 259 133 81 chr1 172200202 172200759 -70463594 + MLT1H1 LTR MaLR 4 549 -6 674 299 181 13 chr1 172200947 172201488 -70462865 - L1ME3A LINE L1 -221 5949 5318 2332 106 0 0 chr1 172201516 172201827 -70462526 + AluSx SINE Alu 1 311 -1 477 303 108 13 chr1 172201954 172202298 -70462055 - L1ME3A LINE L1 -2438 3708 3333 236 159 91 0 chr1 172202509 172202553 -70461800 - L1ME3A LINE L1 -3123 3023 2976 325 280 136 37 chr1 172202878 172203253 -70461100 - L1ME3A LINE L1 -3595 2551 2140 2040 115 17 3 chr1 172203389 172203684 -70460669 - AluSx SINE Alu -11 301 3 315 308 17 17 chr1 172205218 172205338 -70459015 + L2 LINE L2 3178 3297 -16 344 300 120 53 chr1 172205426 172205709 -70458644 - L3 LINE CR1 -199 1378 1077 934 271 14 0 chr1 172205886 172206093 -70458260 - MIR SINE MIR -30 232 23 469 243 40 0 chr1 172206319 172206492 -70457861 + (TA)n Simple_repeat Simple_repeat 1 180 0 30 59 0 0 chr1 172206519 172206570 -70457783 + AT_rich Low_complexity Low_complexity 1 51 0 493 158 0 19 chr1 172206898 172207045 -70457308 + AluJb SINE Alu 82 299 -13 336 286 0 57 chr1 172207200 172207305 -70457048 + L2 LINE L2 3215 3313 0 2126 117 0 0 chr1 172207379 172207679 -70456674 - AluSg SINE Alu -10 300 1 2310 81 3 0 chr1 172208569 172208864 -70455489 + AluSp SINE Alu 1 296 -17 1440 162 18 0 chr1 172208906 172209135 -70455218 + MER46A DNA MER2_type 4 236 0 27 29 0 0 chr1 172209359 172209393 -70454960 + AT_rich Low_complexity Low_complexity 1 34 0 192 40 0 0 chr1 172209884 172209909 -70454444 + (TGAG)n Simple_repeat Simple_repeat 3 27 0 24 53 0 0 chr1 172210061 172210099 -70454254 + AT_rich Low_complexity Low_complexity 1 38 0 235 294 84 17 chr1 172210120 172210239 -70454114 - L2 LINE L2 -153 3119 2993 211 200 0 0 chr1 172210475 172210510 -70453843 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1179 142 123 9 chr1 172210947 172211158 -70453195 + MER46A DNA MER2_type 2 236 0 23 54 0 0 chr1 172212170 172212207 -70452146 + AT_rich Low_complexity Low_complexity 1 37 0 2293 78 7 3 chr1 172212360 172212655 -70451698 - AluY SINE Alu -15 296 1 303 150 250 12 chr1 172213840 172213920 -70450433 - MER58C DNA MER1_type -3 212 114 24 53 0 0 chr1 172214021 172214059 -70450294 + AT_rich Low_complexity Low_complexity 1 38 0 1256 98 5 125 chr1 172214091 172214224 -70450129 + AluSq SINE Alu 3 100 -213 1777 144 0 20 chr1 172214224 172214523 -70449830 + AluSx SINE Alu 1 293 -19 1256 98 5 125 chr1 172214523 172214613 -70449740 + AluSq SINE Alu 100 199 -114 916 157 0 0 chr1 172214715 172214862 -70449491 + AluSg/x SINE Alu 157 303 -9 2083 107 3 3 chr1 172214958 172215248 -70449105 - AluSx SINE Alu -22 290 1 22 35 0 0 chr1 172216009 172216038 -70448315 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 172216196 172216217 -70448136 + AT_rich Low_complexity Low_complexity 1 21 0 1766 34 0 0 chr1 172216264 172216470 -70447883 - AluY SINE Alu 0 311 106 1436 204 13 35 chr1 172217416 172217730 -70446623 + AluJo SINE Alu 6 312 0 28 0 0 0 chr1 172217968 172217996 -70446357 + AT_rich Low_complexity Low_complexity 1 28 0 639 270 86 44 chr1 172218554 172218987 -70445366 + L1MEd LINE L1 895 1252 -4867 386 273 91 19 chr1 172320175 172320329 -70344024 + L3 LINE CR1 839 1003 -574 232 326 12 23 chr1 172320434 172320520 -70343833 + L3 LINE CR1 1490 1574 -3 356 312 115 34 chr1 172321780 172322014 -70342339 + MIR SINE MIR 7 259 -3 414 0 0 0 chr1 172322206 172322252 -70342101 + (TG)n Simple_repeat Simple_repeat 2 47 0 186 304 94 36 chr1 172322627 172322765 -70341588 - L3b LINE CR1 -115 1468 1323 206 382 57 8 chr1 172324648 172324771 -70339582 - L2 LINE L2 0 3272 3144 25 83 0 0 chr1 172325046 172325106 -70339247 + AT_rich Low_complexity Low_complexity 1 60 0 186 43 0 0 chr1 172325305 172325328 -70339025 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1122 337 120 58 chr1 172325584 172326856 -70337497 - L2 LINE L2 -360 2954 1761 1720 173 3 13 chr1 172326856 172327162 -70337191 - AluJo SINE Alu -9 303 1 1122 337 120 58 chr1 172327162 172328154 -70336199 - L2 LINE L2 -1553 1761 551 296 185 19 0 chr1 172328466 172328520 -70335833 - MER58 DNA MER1_type -70 271 217 269 87 22 0 chr1 172329192 172329238 -70335115 + L1MD3 LINE L1 7940 7986 -9 2235 100 7 10 chr1 172329309 172329619 -70334734 + AluSx SINE Alu 1 309 -3 400 247 0 24 chr1 172331754 172331839 -70332514 - MIR3 SINE MIR -23 185 103 1483 149 3 104 chr1 172332085 172332413 -70331940 - AluJo SINE Alu -6 296 2 325 85 43 0 chr1 172332419 172332466 -70331887 - FLAM SINE Alu 0 133 85 291 329 136 19 chr1 172332563 172332718 -70331635 - L2 LINE L2 -4 3268 3096 22 0 0 0 chr1 172334538 172334560 -70329793 + AT_rich Low_complexity Low_complexity 1 22 0 885 334 60 28 chr1 172336101 172336787 -70327566 + MER45C DNA AcHobo 39 777 -176 565 178 25 8 chr1 172336852 172336970 -70327383 - MER45B DNA AcHobo -199 841 722 23 92 0 0 chr1 172337282 172337347 -70327006 + AT_rich Low_complexity Low_complexity 1 65 0 2991 107 24 17 chr1 172337669 172337765 -70326588 + L1PA15 LINE L1 5689 5783 -382 200 59 29 0 chr1 172337765 172337799 -70326554 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 234 0 0 0 chr1 172337798 172337824 -70326529 + (CA)n Simple_repeat Simple_repeat 2 27 0 2991 107 24 17 chr1 172337799 172338196 -70326157 + L1PA15 LINE L1 5783 6160 -5 22 0 0 0 chr1 172338372 172338394 -70325959 + AT_rich Low_complexity Low_complexity 1 22 0 1789 233 74 60 chr1 172340066 172340646 -70323707 + MLT1E LTR MaLR 1 588 -5 265 327 82 19 chr1 172341622 172341830 -70322523 - L2 LINE L2 -21 3292 3072 431 296 87 35 chr1 172341861 172342320 -70322033 - L1M4 LINE L1 -788 5358 4876 835 278 108 60 chr1 172342340 172342512 -70321841 - L1M4 LINE L1 -1322 4824 4662 2181 109 13 0 chr1 172342512 172342816 -70321537 - AluSx SINE Alu -4 308 1 835 278 108 60 chr1 172342816 172343728 -70320625 - L1M4 LINE L1 -1484 4662 3688 1616 156 19 4 chr1 172343927 172344197 -70320156 - AluJb SINE Alu -15 297 24 6338 84 15 4 chr1 172344197 172345523 -70318830 + L1PA8A LINE L1 4761 6103 -28 268 124 67 50 chr1 172345555 172345615 -70318738 - AluJb SINE Alu -261 41 3 317 269 195 23 chr1 172345941 172346428 -70317925 - L1M4 LINE L1 -3131 3015 2445 822 313 116 18 chr1 172346552 172347235 -70317118 - HAL1b LINE L1 -504 844 95 2121 68 15 0 chr1 172347632 172347897 -70316456 - AluY SINE Alu -4 307 39 229 257 119 37 chr1 172348675 172348784 -70315569 - MIR SINE MIR -16 246 129 22 35 0 0 chr1 172349448 172349477 -70314876 + AT_rich Low_complexity Low_complexity 1 29 0 320 317 134 31 chr1 172349508 172349732 -70314621 + MIR SINE MIR 10 256 -6 378 291 118 9 chr1 172350003 172350113 -70314240 + MIR SINE MIR 20 141 -121 398 269 150 42 chr1 172350533 172350726 -70313627 + MIR SINE MIR 8 221 -41 384 289 128 16 chr1 172351699 172351948 -70312405 + L1ME4a LINE L1 5818 6094 -27 24 32 0 0 chr1 172352167 172352198 -70312155 + AT_rich Low_complexity Low_complexity 1 31 0 2717 133 32 11 chr1 172352447 172352915 -70311438 - L1MC1 LINE L1 -9 6324 5847 251 93 23 0 chr1 172353765 172353808 -70310545 + (TA)n Simple_repeat Simple_repeat 2 45 0 188 321 44 58 chr1 172355339 172355476 -70308877 + L3 LINE CR1 109 243 -1334 2193 83 7 0 chr1 172355578 172355856 -70308497 - AluSq SINE Alu -16 297 18 474 313 84 47 chr1 172356132 172356429 -70307924 + L3 LINE CR1 891 1198 -379 277 286 57 0 chr1 172356477 172356547 -70307806 + L3 LINE CR1 1326 1399 -178 186 321 81 65 chr1 172357331 172357764 -70306589 + L2 LINE L2 2813 3252 -20 492 193 0 79 chr1 172357782 172357896 -70306457 - L2 LINE L2 -14 3299 3195 183 338 15 0 chr1 172359310 172359378 -70304975 - L2 LINE L2 0 3313 3245 2262 98 0 0 chr1 172359851 172360137 -70304216 + AluSx SINE Alu 14 299 -13 29 0 0 0 chr1 172360137 172360166 -70304187 + AT_rich Low_complexity Low_complexity 1 29 0 274 280 136 30 chr1 172361650 172361782 -70302571 - L2 LINE L2 0 3313 3168 883 169 48 87 chr1 172363209 172363440 -70300913 - AluJo SINE Alu -8 304 83 315 0 0 0 chr1 172364140 172364175 -70300178 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 285 60 7 chr1 172365305 172365456 -70298897 + (TATATG)n Simple_repeat Simple_repeat 4 162 0 989 213 0 46 chr1 172366304 172366456 -70297897 - AluJb SINE Alu -23 289 148 1812 166 0 3 chr1 172366456 172366745 -70297608 - AluSx SINE Alu -3 309 22 989 213 0 46 chr1 172366745 172366808 -70297545 - AluJb SINE Alu -164 148 84 23 0 0 0 chr1 172366820 172366843 -70297510 + AT_rich Low_complexity Low_complexity 1 23 0 248 328 0 16 chr1 172367288 172367410 -70296943 + (TATATG)n Simple_repeat Simple_repeat 1 120 0 24 0 0 0 chr1 172367994 172368018 -70296335 + AT_rich Low_complexity Low_complexity 1 24 0 1105 162 0 6 chr1 172368263 172368430 -70295923 - AluJb SINE Alu -10 302 137 704 257 147 0 chr1 172368515 172368733 -70295620 + MIR SINE MIR 3 252 -10 194 0 39 0 chr1 172368736 172368762 -70295591 + (TTA)n Simple_repeat Simple_repeat 3 29 0 21 36 0 0 chr1 172370695 172370723 -70293630 + AT_rich Low_complexity Low_complexity 1 28 0 379 275 125 0 chr1 172370952 172371072 -70293281 - MIR3 SINE MIR -8 200 66 264 77 0 0 chr1 172371601 172371640 -70292713 + (T)n Simple_repeat Simple_repeat 1 39 0 1252 344 97 35 chr1 172371834 172373405 -70290948 + L2 LINE L2 1609 3270 -2 22 35 0 0 chr1 172373950 172373979 -70290374 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 172374205 172374228 -70290125 + AT_rich Low_complexity Low_complexity 1 23 0 201 268 8 114 chr1 172374240 172374363 -70289990 - MIR SINE MIR -49 213 104 3979 263 85 57 chr1 172374421 172376833 -70287520 + L1M2 LINE L1 3 2750 -4098 2900 3 0 0 chr1 172376833 172377144 -70287209 - AluYa5 SINE Alu 0 311 1 3979 263 85 57 chr1 172377144 172377248 -70287105 + L1M2 LINE L1 2750 2850 -3998 1307 201 23 34 chr1 172377248 172377512 -70286841 + AluJo SINE Alu 27 287 -25 4364 153 21 60 chr1 172377513 172378173 -70286180 + L1PB3 LINE L1 5180 5864 -290 282 29 0 0 chr1 172378173 172378208 -70286145 + (CA)n Simple_repeat Simple_repeat 2 36 0 4364 153 21 60 chr1 172378208 172378450 -70285903 + L1PB3 LINE L1 5864 6040 -114 1668 169 86 13 chr1 172378450 172378764 -70285589 + MER1B DNA MER1_type 1 337 0 4364 153 21 60 chr1 172378764 172378872 -70285481 + L1PB3 LINE L1 6040 6151 -3 308 292 73 0 chr1 172378925 172379021 -70285332 - L2 LINE L2 -1 3271 3169 3042 72 10 133 chr1 172380014 172380531 -70283822 + MLT2A2 LTR ERVL 1 453 0 2264 191 95 2 chr1 172381224 172381686 -70282667 + MLT1D LTR MaLR 1 505 0 31 44 0 0 chr1 172382233 172382278 -70282075 + AT_rich Low_complexity Low_complexity 1 45 0 237 264 98 80 chr1 172382697 172382860 -70281493 + L2 LINE L2 3144 3309 -4 1931 123 11 7 chr1 172383082 172383391 -70280962 - AluSq SINE Alu 0 310 1 320 333 228 9 chr1 172383549 172383768 -70280585 - L2 LINE L2 -11 3261 2995 231 36 0 0 chr1 172383934 172383962 -70280391 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 603 284 76 0 chr1 172384027 172384224 -70280129 + MER20 DNA MER1_type 8 219 0 23 0 0 0 chr1 172385750 172385773 -70278580 + AT_rich Low_complexity Low_complexity 1 23 0 298 349 32 0 chr1 172386881 172387007 -70277346 + MIR SINE MIR 23 152 -110 369 109 0 0 chr1 172387636 172387691 -70276662 + (CA)n Simple_repeat Simple_repeat 2 56 0 1363 190 238 11 chr1 172389620 172390062 -70274291 + L1ME2 LINE L1 5609 6150 -14 41752 61 1 2 chr1 172390327 172396482 -70267871 + L1PA5 LINE L1 1 6154 0 2248 94 17 0 chr1 172397084 172397382 -70266971 + AluSc SINE Alu 1 303 -6 315 0 0 0 chr1 172398351 172398386 -70265967 + (CA)n Simple_repeat Simple_repeat 2 36 0 201 182 39 39 chr1 172398644 172398721 -70265632 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 1167 136 12 0 chr1 172399400 172399562 -70264791 - FAM SINE Alu -11 174 11 271 366 13 59 chr1 172399636 172399789 -70264564 + MIR3 SINE MIR 6 151 -57 414 266 107 44 chr1 172401111 172401369 -70262984 - MLT1K LTR MaLR -1 587 332 335 217 0 0 chr1 172401434 172401494 -70262859 - MLT1L LTR MaLR -407 208 149 1072 221 28 0 chr1 172401495 172401708 -70262645 - MER20 DNA MER1_type 0 219 1 1463 171 100 55 chr1 172401754 172402133 -70262220 + MSTD LTR MaLR 1 396 0 450 333 144 20 chr1 172402377 172402824 -70261529 + L2 LINE L2 2488 2987 -285 1957 225 100 20 chr1 172404743 172405241 -70259112 + MLT1H LTR MaLR 12 549 0 1776 195 3 0 chr1 172405366 172405663 -70258690 - AluJb SINE Alu -14 298 1 274 346 47 19 chr1 172405921 172406028 -70258325 - MIR SINE MIR -87 121 11 817 144 0 0 chr1 172406047 172406165 -70258188 - FLAM_C SINE Alu -15 118 1 661 320 135 67 chr1 172407922 172408694 -70255659 - L1MEd LINE L1 -5295 824 1 21 0 0 0 chr1 172408750 172408771 -70255582 + AT_rich Low_complexity Low_complexity 1 21 0 754 195 157 0 chr1 172408958 172409117 -70255236 - MER5A DNA MER1_type -5 184 1 640 327 19 64 chr1 172409124 172409390 -70254963 + MIR SINE MIR 9 262 0 308 339 25 0 chr1 172411034 172411152 -70253201 + MIR SINE MIR 85 205 -57 23 54 0 0 chr1 172412968 172413005 -70251348 + AT_rich Low_complexity Low_complexity 1 37 0 829 323 28 8 chr1 172413839 172414087 -70250266 + MIR SINE MIR 8 260 -2 495 290 8 0 chr1 172414179 172414303 -70250050 + L2 LINE L2 3185 3309 -4 190 321 12 0 chr1 172415104 172415185 -70249168 - L2 LINE L2 -5 3308 3227 333 278 179 26 chr1 172415870 172416021 -70248332 + MIR SINE MIR 40 213 -49 180 291 0 0 chr1 172416066 172416145 -70248208 + GA-rich Low_complexity Low_complexity 2 80 0 2078 150 0 0 chr1 172416169 172416475 -70247878 - AluJb SINE Alu -6 306 1 460 321 164 48 chr1 172417052 172417556 -70246797 - L2 LINE L2 0 3313 2690 2269 103 7 0 chr1 172417556 172417856 -70246497 + AluSq SINE Alu 1 302 -11 460 321 164 48 chr1 172417856 172418084 -70246269 - L2 LINE L2 -623 2690 2490 196 202 232 20 chr1 172418227 172418326 -70246027 - MIR SINE MIR -6 256 137 615 215 0 0 chr1 172418816 172418923 -70245430 + FAM SINE Alu 46 152 -33 319 315 85 6 chr1 172419568 172419733 -70244620 + L1M4 LINE L1 2443 2620 -3526 891 240 58 0 chr1 172419745 172419953 -70244400 - MIR SINE MIR -30 232 13 1445 179 8 0 chr1 172419954 172420194 -70244159 - AluJb SINE Alu -3 309 68 3586 161 19 0 chr1 172420502 172421117 -70243236 - L1MA7 LINE L1 -235 6056 5430 323 235 139 53 chr1 172421130 172421504 -70242849 + L1M4 LINE L1 2894 3299 -2847 1115 286 57 25 chr1 172421575 172422134 -70242219 - L1M4 LINE L1 -2079 4067 3491 277 241 62 62 chr1 172422223 172422385 -70241968 + L1MEd LINE L1 12 173 -5946 341 330 68 31 chr1 172422742 172422933 -70241420 + L1MEd LINE L1 602 799 -5320 677 287 100 25 chr1 172422993 172423650 -70240703 + L1MEd LINE L1 895 1690 -800 385 337 52 9 chr1 172424125 172424451 -70239902 + L1MEd LINE L1 2229 2568 -3561 1107 266 102 39 chr1 172424601 172425011 -70239342 - L2 LINE L2 -20 3293 2858 646 308 70 10 chr1 172425091 172425393 -70238960 - L2 LINE L2 -708 2606 2287 638 238 30 24 chr1 172425679 172425847 -70238506 - MER63A DNA MER1_type -36 174 6 258 278 42 0 chr1 172425857 172425929 -70238424 - MIR SINE MIR -113 149 75 497 298 28 64 chr1 172425979 172426230 -70238123 - MIR SINE MIR -18 244 2 234 0 0 0 chr1 172426768 172426794 -70237559 + (A)n Simple_repeat Simple_repeat 1 26 0 2179 125 0 3 chr1 172427209 172427506 -70236847 + AluSx SINE Alu 1 296 -16 2605 163 43 9 chr1 172427743 172427922 -70236431 + MLT1C LTR MaLR 1 172 -295 2047 135 6 6 chr1 172427922 172428234 -70236119 + AluSx SINE Alu 1 312 0 2605 163 43 9 chr1 172428234 172428496 -70235857 + MLT1C LTR MaLR 172 457 -10 347 234 149 0 chr1 172428522 172428616 -70235737 - MIR SINE MIR -135 127 20 347 329 168 19 chr1 172428635 172429009 -70235344 + L2 LINE L2 1793 2222 -1092 301 258 140 48 chr1 172429854 172430040 -70234313 + L2 LINE L2 2585 2787 -527 203 310 23 85 chr1 172430061 172430190 -70234163 + L2 LINE L2 2993 3113 -159 216 281 0 16 chr1 172430259 172430323 -70234030 + L2 LINE L2 3210 3272 0 2429 63 3 19 chr1 172430536 172430852 -70233501 + AluY SINE Alu 1 311 0 226 167 0 0 chr1 172431615 172431657 -70232696 - L2 LINE L2 0 3313 3272 255 331 141 21 chr1 172432609 172432751 -70231602 - MIR3 SINE MIR -34 174 16 3596 259 73 26 chr1 172432973 172433553 -70230800 + L2 LINE L2 1805 2356 -957 1037 195 64 125 chr1 172433553 172433807 -70230546 - MSTB2 LTR MaLR 0 457 246 2149 137 0 0 chr1 172433807 172434114 -70230239 - AluSx SINE Alu -1 311 5 1037 195 64 125 chr1 172434114 172434346 -70230007 - MSTB2 LTR MaLR -211 246 1 3596 259 73 26 chr1 172434346 172435208 -70229145 + L2 LINE L2 2356 3313 0 2732 139 16 2 chr1 172435527 172435966 -70228387 + L1PA15 LINE L1 5721 6165 0 2073 163 8 31 chr1 172436091 172436699 -70227654 + L1MB8 LINE L1 5483 6177 -1 288 265 39 53 chr1 172437191 172437347 -70227006 - MIR3 SINE MIR -7 201 82 1789 157 20 3 chr1 172437394 172437687 -70226666 + AluJb SINE Alu 15 312 0 193 161 0 54 chr1 172438526 172438582 -70225771 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 580 247 71 7 chr1 172441880 172442034 -70222319 + MIR SINE MIR 8 171 -91 3287 218 66 26 chr1 172442039 172443418 -70220935 - L1MEc LINE L1 -3419 2796 1398 2178 264 65 16 chr1 172443453 172444204 -70220149 - L1MEc LINE L1 -5063 1333 546 262 281 21 31 chr1 172444212 172444308 -70220045 - LTR16C LTR ERVL -65 426 332 342 322 122 45 chr1 172444997 172445536 -70218817 - L2 LINE L2 -1 3271 2612 486 285 24 0 chr1 172445548 172445671 -70218682 - MIR SINE MIR -120 142 17 346 188 125 52 chr1 172447483 172447579 -70216774 - MIR3 SINE MIR -23 185 83 525 208 45 144 chr1 172447650 172447702 -70216651 - MIR SINE MIR -2 260 204 267 31 0 0 chr1 172447702 172447734 -70216619 + (TA)n Simple_repeat Simple_repeat 2 33 0 2212 125 0 0 chr1 172447734 172448030 -70216323 - AluSx SINE Alu -16 296 1 525 208 45 144 chr1 172448030 172448178 -70216175 - MIR SINE MIR -56 206 79 234 245 0 43 chr1 172448719 172448813 -70215540 + L1MC4 LINE L1 6614 6703 -1339 * 248 228 65 11 chr1 172448809 172448901 -70215452 - L1MC4 LINE L1 -1339 6703 6607 227 311 0 0 chr1 172448865 172448955 -70215398 + L1MC4 LINE L1 6614 6703 -1339 * 225 174 0 0 chr1 172448927 172448973 -70215380 - L1MC4 LINE L1 -1339 6703 6658 * 267 103 0 0 chr1 172448973 172449012 -70215341 + (CA)n Simple_repeat Simple_repeat 2 40 0 468 188 0 0 chr1 172449014 172449094 -70215259 - FLAM_A SINE Alu -21 121 42 295 290 38 57 chr1 172449146 172449333 -70215020 - MIR SINE MIR -38 224 45 22 56 0 0 chr1 172449547 172449583 -70214770 + AT_rich Low_complexity Low_complexity 1 36 0 373 358 135 0 chr1 172449910 172450117 -70214236 - L3b LINE CR1 -90 1493 1259 2174 154 60 113 chr1 172450364 172450992 -70213361 + L1MC3 LINE L1 6500 7094 -691 323 253 58 0 chr1 172450993 172451080 -70213273 + MLT1F1 LTR MaLR 34 125 -442 813 167 93 0 chr1 172451093 172451243 -70213110 + L1MC3 LINE L1 7203 7366 -419 1200 167 118 0 chr1 172451251 172451514 -70212839 + L1MC3 LINE L1 7483 7776 -9 2715 125 13 22 chr1 172451661 172452110 -70212243 - MER65A LTR ERV1 0 445 1 238 330 117 0 chr1 172454633 172454736 -70209617 + L2 LINE L2 3158 3272 0 432 307 217 5 chr1 172454809 172455021 -70209332 + MIR SINE MIR 2 258 -4 31 0 0 0 chr1 172456657 172456688 -70207665 + AT_rich Low_complexity Low_complexity 1 31 0 1867 175 10 0 chr1 172457376 172457685 -70206668 + AluJb SINE Alu 1 312 0 264 59 0 0 chr1 172457794 172457828 -70206525 + (CA)n Simple_repeat Simple_repeat 1 34 0 477 0 0 0 chr1 172458660 172458713 -70205640 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 189 309 0 0 chr1 172458810 172458852 -70205501 + L3 LINE CR1 328 369 -1208 1124 315 75 42 chr1 172458853 172459425 -70204928 + L3 LINE CR1 612 1202 -375 1615 241 132 33 chr1 172459666 172460181 -70204172 + MLT1G1 LTR MaLR 27 592 -3 359 322 81 3 chr1 172460353 172460630 -70203723 - L1MC4a LINE L1 -356 5818 5623 210 384 7 43 chr1 172460906 172461044 -70203309 + L3 LINE CR1 1296 1428 -149 43836 38 1 7 chr1 172461254 172467434 -70196919 - L1PA3 LINE L1 -3 6152 13 864 73 139 15 chr1 172467469 172467606 -70196747 - MLT2A1 LTR ERVL -83 361 208 1799 216 58 20 chr1 172467633 172468082 -70196271 + MLT1C LTR MaLR 2 467 0 287 356 126 22 chr1 172468098 172468233 -70196120 + L3 LINE CR1 1418 1566 -11 21 0 0 0 chr1 172468585 172468606 -70195747 + AT_rich Low_complexity Low_complexity 1 21 0 249 351 11 0 chr1 172469036 172469130 -70195223 + MIR SINE MIR 162 256 -6 353 351 188 0 chr1 172469238 172469446 -70194907 + MIR SINE MIR 8 254 -8 1017 214 41 109 chr1 172469641 172470128 -70194225 + LTR37B LTR ERV1 6 459 -9 268 364 30 15 chr1 172471012 172471144 -70193209 + MIR3 SINE MIR 66 199 -9 271 286 0 0 chr1 172471353 172471416 -70192937 + MIR SINE MIR 51 113 -95 631 327 25 0 chr1 172471563 172471762 -70192591 + MIR SINE MIR 56 259 -3 401 285 84 28 chr1 172472675 172472889 -70191464 - MIR SINE MIR -15 247 17 452 227 169 19 chr1 172474598 172474752 -70189601 + MER5A DNA MER1_type 13 189 0 2910 195 33 8 chr1 172474923 172475554 -70188799 - L1MA9 LINE L1 -1000 5146 4500 2897 163 14 22 chr1 172475553 172476161 -70188192 + L1MA9 LINE L1 5177 5779 -533 * 1163 112 0 0 chr1 172476163 172476324 -70188029 + AluSg/x SINE Alu 151 311 -1 459 35 0 0 chr1 172476332 172476389 -70187964 + (CA)n Simple_repeat Simple_repeat 2 58 0 1773 215 35 35 chr1 172476391 172476870 -70187483 + L1MA9 LINE L1 5796 6274 -38 1587 171 11 38 chr1 172476909 172477196 -70187157 + AluJo SINE Alu 19 297 -15 1557 180 16 33 chr1 172477287 172477592 -70186761 + AluJo SINE Alu 1 300 -12 344 333 106 8 chr1 172477793 172477916 -70186437 - L2 LINE L2 0 3272 3138 724 269 158 21 chr1 172477916 172478483 -70185870 - L2 LINE L2 -2 3311 2678 213 301 133 0 chr1 172478485 172478568 -70185785 - L2 LINE L2 -749 2565 2472 434 179 116 9 chr1 172480903 172481015 -70183338 + FLAM_A SINE Alu 2 125 -8 822 218 5 51 chr1 172481183 172481380 -70182973 - MER5A DNA MER1_type -1 188 1 514 255 202 19 chr1 172481470 172481678 -70182675 + MIR SINE MIR 17 262 0 216 0 0 0 chr1 172481990 172482014 -70182339 + (A)n Simple_repeat Simple_repeat 1 24 0 236 279 87 29 chr1 172482276 172482380 -70181973 + L3b LINE CR1 1276 1385 -198 * 546 256 43 60 chr1 172482370 172482604 -70181749 - L2 LINE L2 -1 3312 3083 418 286 166 35 chr1 172482638 172482897 -70181456 - L2 LINE L2 -372 2942 2650 6355 137 25 35 chr1 172483472 172483642 -70180711 - Ricksha_a DNA DNA -2078 1173 1003 1769 173 0 14 chr1 172483642 172483925 -70180428 + AluJb SINE Alu 1 279 -33 6355 137 25 35 chr1 172483925 172484565 -70179788 - Ricksha_a DNA DNA -2248 1003 375 2188 121 0 3 chr1 172484565 172484870 -70179483 - AluSx SINE Alu -8 304 1 6355 137 25 35 chr1 172484870 172485241 -70179112 - Ricksha_a DNA DNA -2876 375 2 527 156 0 0 chr1 172485522 172485599 -70178754 + FRAM/FAM SINE Alu 1 76 -100 199 269 30 45 chr1 172486233 172486300 -70178053 + MER5A DNA MER1_type 44 109 -80 316 273 72 42 chr1 172486579 172486779 -70177574 + MER20 DNA MER1_type 8 213 -6 774 220 0 0 chr1 172487242 172487419 -70176934 + GA-rich Low_complexity Low_complexity 2 178 0 607 133 126 15 chr1 172487419 172487554 -70176799 + L1MA9 LINE L1 6163 6312 0 210 254 298 26 chr1 172488217 172488331 -70176022 + MIR3 SINE MIR 19 163 -45 1767 142 4 0 chr1 172489840 172490101 -70174252 + AluSx SINE Alu 11 272 -40 318 331 165 14 chr1 172490234 172490494 -70173859 + L2 LINE L2 2694 2986 -286 367 226 12 24 chr1 172490494 172490578 -70173775 - L2 LINE L2 0 3313 3231 563 210 42 34 chr1 172490711 172490949 -70173404 + L1MC5 LINE L1 7543 7782 -179 598 212 7 44 chr1 172490953 172491090 -70173263 + FLAM_A SINE Alu 1 132 -10 998 124 12 65 chr1 172491090 172491259 -70173094 + MSTC LTR MaLR 208 367 -61 21 0 0 0 chr1 172491259 172491280 -70173073 + AT_rich Low_complexity Low_complexity 1 21 0 237 272 57 123 chr1 172491452 172491680 -70172673 + L2 LINE L2 3033 3245 -27 241 258 0 16 chr1 172491812 172491874 -70172479 - L2 LINE L2 -1 3312 3252 724 66 0 0 chr1 172493669 172493796 -70170557 + L1PA3 LINE L1 6041 6167 0 301 282 12 12 chr1 172494252 172494337 -70170016 - L2 LINE L2 0 3272 3188 234 0 0 0 chr1 172494721 172494747 -70169606 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 259 313 38 69 chr1 172496036 172496167 -70168186 - MIR3 SINE MIR -1 207 81 21 57 0 0 chr1 172496962 172496997 -70167356 + AT_rich Low_complexity Low_complexity 1 35 0 309 307 68 45 chr1 172498106 172498282 -70166071 - MIR3 SINE MIR -14 194 15 467 184 184 15 chr1 172498506 172498642 -70165711 + MER103 DNA DNA 8 166 0 229 271 34 0 chr1 172499052 172499111 -70165242 - MIR SINE MIR -12 250 190 216 244 24 85 chr1 172499110 172499192 -70165161 - MIR SINE MIR -182 80 4 * 2165 98 7 3 chr1 172500649 172500946 -70163407 + AluSx SINE Alu 6 303 -9 22 0 0 0 chr1 172501592 172501614 -70162739 + AT_rich Low_complexity Low_complexity 1 22 0 219 69 0 0 chr1 172501903 172501932 -70162421 + (TG)n Simple_repeat Simple_repeat 2 30 0 374 352 69 23 chr1 172502458 172502674 -70161679 + MIR SINE MIR 24 249 -13 1026 162 71 146 chr1 172502851 172503188 -70161165 - AluJb SINE Alu 0 314 1 415 155 0 63 chr1 172503457 172503599 -70160754 + (TG)n Simple_repeat Simple_repeat 2 134 0 665 130 112 40 chr1 172503805 172504079 -70160274 - Charlie5 DNA MER1_type 0 2623 1 1645 148 17 41 chr1 172504097 172504408 -70159945 - AluSx SINE Alu 0 304 1 693 194 23 0 chr1 172504917 172505046 -70159307 - FLAM_A SINE Alu -1 132 1 283 291 77 8 chr1 172506286 172506403 -70157950 - L2 LINE L2 -5 3308 3184 26 50 0 0 chr1 172506531 172506571 -70157782 + AT_rich Low_complexity Low_complexity 1 40 0 213 349 185 13 chr1 172506706 172507079 -70157274 - L2 LINE L2 -640 2674 2238 878 336 61 24 chr1 172507145 172507636 -70156717 + HERVL LTR ERVL 2809 3317 -2337 347 313 18 23 chr1 172507867 172508084 -70156269 + L1ME4a LINE L1 5708 5923 -198 545 297 88 48 chr1 172508200 172508656 -70155697 - L2 LINE L2 -168 3145 1284 21 0 0 0 chr1 172508656 172508677 -70155676 + AT_rich Low_complexity Low_complexity 1 21 0 331 203 64 12 chr1 172509421 172509529 -70154824 - MLT1H LTR MaLR 0 542 464 794 297 33 42 chr1 172509557 172509887 -70154466 - MLT1H LTR MaLR -202 347 21 447 19 0 0 chr1 172510017 172510069 -70154284 + (CA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr1 172510762 172510783 -70153570 + AT_rich Low_complexity Low_complexity 1 21 0 2519 59 0 7 chr1 172510835 172511141 -70153212 - AluY SINE Alu -5 306 3 452 105 0 58 chr1 172511290 172511376 -70152977 - L1PA8 LINE L1 -3 6169 6089 2186 107 0 0 chr1 172512226 172512517 -70151836 + AluSg SINE Alu 1 291 -19 207 0 0 0 chr1 172512589 172512612 -70151741 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2174 142 5 39 chr1 172512760 172513148 -70151205 + THE1C LTR MaLR 1 375 0 29 47 0 0 chr1 172513153 172513196 -70151157 + AT_rich Low_complexity Low_complexity 1 43 0 519 300 20 0 chr1 172513714 172513864 -70150489 + MIR SINE MIR 110 262 0 24 0 0 0 chr1 172514459 172514483 -70149870 + AT_rich Low_complexity Low_complexity 1 24 0 1366 70 5 0 chr1 172515000 172515186 -70149167 - L1MA1 LINE L1 0 6302 6116 538 271 80 67 chr1 172515251 172515392 -70148961 - LTR33 LTR ERVL -293 228 81 2196 82 17 7 chr1 172515392 172515684 -70148669 + AluSc SINE Alu 3 297 -12 538 271 80 67 chr1 172515684 172515767 -70148586 - LTR33 LTR ERVL -440 81 1 479 244 233 12 chr1 172515769 172515941 -70148412 + MIR SINE MIR 2 211 -51 23 0 0 0 chr1 172518036 172518059 -70146294 + AT_rich Low_complexity Low_complexity 1 23 0 34 99 0 0 chr1 172519375 172519486 -70144867 + AT_rich Low_complexity Low_complexity 1 111 0 286 269 50 0 chr1 172519552 172519671 -70144682 + L1ME4a LINE L1 5946 6070 -51 7006 172 27 42 chr1 172520360 172522174 -70142179 - L1PB4 LINE L1 0 6156 4391 1486 157 11 0 chr1 172522174 172522441 -70141912 - L1PA13 LINE L1 -3 6160 5891 7006 172 27 42 chr1 172522441 172523124 -70141229 - L1PB4 LINE L1 -1765 4391 3700 244 298 0 0 chr1 172523178 172523235 -70141118 + L2 LINE L2 3213 3269 -3 1767 182 0 3 chr1 172523613 172523909 -70140444 - AluJb SINE Alu -17 295 1 235 287 119 10 chr1 172523992 172524093 -70140260 - L2 LINE L2 0 3313 3202 * 353 351 137 14 chr1 172524065 172524415 -70139938 - L2 LINE L2 -2358 956 564 382 309 16 41 chr1 172525045 172525168 -70139185 + L2 LINE L2 3150 3269 -3 1716 206 88 109 chr1 172525352 172526113 -70138240 - LTR1B LTR ERV1 -81 745 1 1249 230 81 31 chr1 172527729 172528151 -70136202 - L1ME2 LINE L1 -34 6130 5688 289 213 75 11 chr1 172528157 172528251 -70136102 - L1ME2 LINE L1 -673 5493 5394 * 699 298 102 77 chr1 172528242 172529071 -70135282 - L1MEc LINE L1 -5469 927 78 21 57 0 0 chr1 172529439 172529474 -70134879 + AT_rich Low_complexity Low_complexity 1 35 0 273 323 158 47 chr1 172531125 172531487 -70132866 + L2 LINE L2 2564 2965 -349 194 0 39 0 chr1 172531731 172531757 -70132596 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 42415 34 21 1 chr1 172531757 172537772 -70126581 - L1PA2 LINE L1 -13 6142 4 392 259 0 19 chr1 172537794 172537902 -70126451 + MER104 DNA Tc2 58 163 -17 23 54 0 0 chr1 172537934 172537971 -70126382 + AT_rich Low_complexity Low_complexity 1 37 0 766 214 87 19 chr1 172538208 172538414 -70125939 - L1ME3A LINE L1 0 6170 5951 1400 80 0 0 chr1 172538414 172538601 -70125752 + AluY SINE Alu 124 310 -1 1991 253 20 0 chr1 172538631 172539133 -70125220 - L1ME3A LINE L1 -208 5962 5451 21 0 0 0 chr1 172539142 172539163 -70125190 + AT_rich Low_complexity Low_complexity 1 21 0 2311 72 7 3 chr1 172540380 172540673 -70123680 - AluY SINE Alu -17 294 1 327 284 107 41 chr1 172540786 172540955 -70123398 + L1ME4a LINE L1 5877 6056 -65 191 378 152 5 chr1 172541986 172542190 -70122163 + L2 LINE L2 2932 3165 -107 662 308 69 5 chr1 172543418 172543653 -70120700 + MER69 DNA AcHobo 8 255 -971 253 265 15 0 chr1 172543641 172543709 -70120644 + MER69 DNA AcHobo 752 820 -1706 * 765 236 158 16 chr1 172543720 172544030 -70120323 + MER69 DNA AcHobo 2173 2526 0 211 140 40 0 chr1 172545736 172545786 -70118567 + CT-rich Low_complexity Low_complexity 2 53 0 183 346 39 0 chr1 172545987 172546065 -70118288 + MIR SINE MIR 180 260 -2 21 36 0 0 chr1 172546535 172546563 -70117790 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 172546665 172546689 -70117664 + AT_rich Low_complexity Low_complexity 1 24 0 611 0 27 0 chr1 172546817 172546891 -70117462 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 293 147 0 29 chr1 172547218 172547286 -70117067 + (TATG)n Simple_repeat Simple_repeat 2 67 0 278 277 138 38 chr1 172549084 172549243 -70115110 + MIR SINE MIR 67 241 -21 22 0 0 0 chr1 172549471 172549493 -70114860 + AT_rich Low_complexity Low_complexity 1 22 0 225 323 0 15 chr1 172549654 172549719 -70114634 + polypyrimidine Low_complexity Low_complexity 1 64 0 394 321 8 15 chr1 172549719 172549853 -70114500 - L2 LINE L2 -13 3300 3168 313 229 0 0 chr1 172550288 172550349 -70114004 + MIR3 SINE MIR 121 181 -27 22 0 0 0 chr1 172551387 172551409 -70112944 + AT_rich Low_complexity Low_complexity 1 22 0 297 301 71 71 chr1 172551773 172552042 -70112311 + L2 LINE L2 2695 2963 -351 261 121 30 15 chr1 172553238 172553304 -70111049 + (TATAA)n Simple_repeat Simple_repeat 1 67 0 23 0 0 0 chr1 172554204 172554227 -70110126 + AT_rich Low_complexity Low_complexity 1 23 0 2289 116 0 0 chr1 172554996 172555306 -70109047 - AluSg SINE Alu 0 310 1 23 54 0 0 chr1 172555831 172555868 -70108485 + AT_rich Low_complexity Low_complexity 1 37 0 489 356 38 21 chr1 172556525 172556764 -70107589 + MIR SINE MIR 2 244 -18 190 341 22 33 chr1 172557309 172557400 -70106953 + MIR SINE MIR 95 184 -78 243 157 78 0 chr1 172558215 172558266 -70106087 - L2 LINE L2 -2 3270 3216 24 53 0 0 chr1 172559333 172559371 -70104982 + AT_rich Low_complexity Low_complexity 1 38 0 270 176 0 0 chr1 172560474 172560525 -70103828 + (TG)n Simple_repeat Simple_repeat 2 52 0 240 178 0 22 chr1 172560639 172560684 -70103669 + L2 LINE L2 3261 3304 -9 401 306 111 19 chr1 172560719 172560935 -70103418 + MIR SINE MIR 18 253 -9 419 176 108 29 chr1 172561185 172561316 -70103037 - MLT1J1 LTR MaLR -52 391 225 840 237 82 5 chr1 172561463 172561657 -70102696 - MER63A DNA MER1_type -1 209 1 2037 200 29 74 chr1 172562462 172563041 -70101312 - MLT2B3 LTR ERVL 0 554 2 43 20 0 0 chr1 172563512 172563562 -70100791 + AT_rich Low_complexity Low_complexity 1 50 0 496 275 132 18 chr1 172564143 172564310 -70100043 + MIR SINE MIR 21 206 -56 29 28 0 0 chr1 172564994 172565030 -70099323 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 172565953 172565974 -70098379 + AT_rich Low_complexity Low_complexity 1 21 0 322 312 29 58 chr1 172566191 172566329 -70098024 - MER5A DNA MER1_type -35 154 21 212 167 71 0 chr1 172566482 172566524 -70097829 - L2 LINE L2 -69 3244 3200 741 306 0 6 chr1 172567085 172567268 -70097085 + MER5A DNA MER1_type 7 188 -1 1532 33 0 0 chr1 172568656 172568836 -70095517 - AluY SINE Alu 0 311 132 353 293 41 0 chr1 172569141 172569264 -70095089 + MER104 DNA Tc2 47 174 -6 207 0 0 0 chr1 172569453 172569476 -70094877 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 409 214 10 29 chr1 172569740 172569843 -70094510 - L2 LINE L2 -64 3249 3149 603 295 18 0 chr1 172569867 172570033 -70094320 - MER69A DNA AcHobo -8 169 1 426 327 9 14 chr1 172570150 172570367 -70093986 - L2 LINE L2 -273 3040 2825 335 277 36 10 chr1 172571474 172571597 -70092756 + MIR SINE MIR 76 203 -5 22 0 0 0 chr1 172572362 172572384 -70091969 + AT_rich Low_complexity Low_complexity 1 22 0 652 279 10 39 chr1 172573244 172573452 -70090901 + MIR SINE MIR 54 255 -7 201 74 0 0 chr1 172573453 172573480 -70090873 + (TTA)n Simple_repeat Simple_repeat 2 28 0 333 0 0 0 chr1 172575345 172575382 -70088971 + (CA)n Simple_repeat Simple_repeat 2 38 0 353 333 55 33 chr1 172575461 172575644 -70088709 - MIR3 SINE MIR -1 207 21 290 274 15 52 chr1 172576099 172576234 -70088119 - LTR16A LTR ERVL -178 272 143 364 304 52 37 chr1 172576243 172576378 -70087975 - MIR3 SINE MIR -11 197 61 671 166 153 12 chr1 172576388 172576551 -70087802 + MER53 DNA DNA 4 189 0 27 73 0 0 chr1 172576621 172576676 -70087677 + AT_rich Low_complexity Low_complexity 1 55 0 317 200 136 27 chr1 172576688 172576798 -70087555 - L1ME4a LINE L1 -37 6084 5963 1752 108 0 0 chr1 172577045 172577296 -70087057 + L1PA8A LINE L1 5881 6131 0 27 29 0 0 chr1 172578567 172578601 -70085752 + AT_rich Low_complexity Low_complexity 1 34 0 353 321 107 12 chr1 172579703 172579871 -70084482 + MER5A DNA MER1_type 1 184 -5 24 67 0 0 chr1 172580803 172580848 -70083505 + AT_rich Low_complexity Low_complexity 1 45 0 1068 187 79 35 chr1 172581647 172581991 -70082362 - MSTD LTR MaLR 0 396 1 2095 106 0 7 chr1 172582037 172582373 -70081980 + AluSc SINE Alu 1 334 0 423 178 14 0 chr1 172583256 172583329 -70081024 + LTR67 LTR ERVL 484 557 0 393 304 40 48 chr1 172583349 172583576 -70080777 + HAL1b LINE L1 471 695 -653 40 0 0 0 chr1 172585984 172586024 -70078329 + AT_rich Low_complexity Low_complexity 1 40 0 936 120 0 0 chr1 172586024 172586157 -70078196 - FLAM_C SINE Alu 0 133 1 381 289 26 0 chr1 172587356 172587470 -70076883 - MER117 DNA MER1_type -57 140 24 850 53 0 18 chr1 172589411 172589524 -70074829 - AluSg/x SINE Alu -1 308 198 2081 126 10 3 chr1 172590127 172590436 -70073917 + AluSx SINE Alu 1 311 -1 237 65 0 0 chr1 172591519 172591550 -70072803 + (TG)n Simple_repeat Simple_repeat 2 32 0 254 208 0 0 chr1 172591595 172591643 -70072710 + MIR3 SINE MIR 150 197 -11 200 338 15 0 chr1 172591906 172591974 -70072379 - L2 LINE L2 0 3272 3204 514 306 81 10 chr1 172592279 172592488 -70071865 + MER20B DNA MER1_type 44 267 -516 977 228 152 6 chr1 172592506 172592862 -70071491 + MER20B DNA MER1_type 376 783 0 1868 164 0 16 chr1 172593887 172594192 -70070161 + AluSx SINE Alu 1 300 -12 711 311 44 9 chr1 172596075 172596300 -70068053 - MIR SINE MIR -23 239 7 267 31 0 0 chr1 172596948 172596980 -70067373 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr1 172597107 172597128 -70067225 + AT_rich Low_complexity Low_complexity 1 21 0 2367 104 120 5 chr1 172597263 172597647 -70066706 + MSTA LTR MaLR 1 428 0 324 256 0 12 chr1 172599703 172599785 -70064568 - MIR SINE MIR -70 192 112 21 36 0 0 chr1 172601370 172601398 -70062955 + AT_rich Low_complexity Low_complexity 1 28 0 500 283 7 21 chr1 172601738 172601883 -70062470 + MIR SINE MIR 35 177 -85 2111 109 0 10 chr1 172601908 172602211 -70062142 + AluSg SINE Alu 1 300 -10 1793 204 55 49 chr1 172604269 172604783 -70059570 - Charlie1b DNA MER1_type -1 522 6 21 36 0 0 chr1 172605980 172606008 -70058345 + AT_rich Low_complexity Low_complexity 1 28 0 335 361 91 40 chr1 172607813 172608238 -70056115 + L2 LINE L2 2713 3161 -111 723 249 103 28 chr1 172609268 172609481 -70054872 - MIR SINE MIR 0 262 34 291 327 10 39 chr1 172611382 172611486 -70052867 - L2 LINE L2 -4 3268 3168 2406 101 0 0 chr1 172612440 172612746 -70051607 + AluSp SINE Alu 2 307 -6 302 176 27 0 chr1 172613180 172613254 -70051099 + (CACCAT)n Simple_repeat Simple_repeat 5 80 0 26 0 0 0 chr1 172613391 172613417 -70050936 + AT_rich Low_complexity Low_complexity 1 26 0 247 235 0 0 chr1 172613804 172613855 -70050498 - L2 LINE L2 0 3272 3222 467 273 171 16 chr1 172613969 172614156 -70050197 - MIR SINE MIR -21 241 26 519 235 42 0 chr1 172614165 172614284 -70050069 + MIR SINE MIR 139 262 0 1573 138 6 119 chr1 172614456 172614775 -70049578 + AluJb SINE Alu 8 290 -22 3470 167 97 43 chr1 172615932 172616694 -70047659 + MER21B LTR ERV1 1 803 -60 3570 42 0 11 chr1 172618651 172619104 -70045249 + LTR7 LTR ERV1 1 448 -2 16042 99 19 32 chr1 172619106 172622257 -70042096 + HERVH LTR ERV1 1 2995 -4718 919 120 7 0 chr1 172622236 172622386 -70041967 + HERVH LTR ERV1 3140 3290 -4423 * 3219 111 0 6 chr1 172622376 172622881 -70041472 + HERVH LTR ERV1 3492 3993 -3720 4112 136 5 1 chr1 172622883 172623543 -70040810 + HERVH LTR ERV1 4488 5149 -2564 1369 120 19 0 chr1 172623544 172623760 -70040593 + HERVH LTR ERV1 5600 5819 -1894 2480 61 45 13 chr1 172623760 172624138 -70040215 + HERVH LTR ERV1 7324 7713 0 3585 47 0 7 chr1 172624138 172624589 -70039764 + LTR7 LTR ERV1 1 448 -2 723 235 44 25 chr1 172625453 172625657 -70038696 - MER3 DNA MER1_type 0 209 2 230 387 35 86 chr1 172627121 172627436 -70036917 + L2 LINE L2 2934 3232 -40 219 350 58 42 chr1 172628014 172628134 -70036219 - L2 LINE L2 -2 3311 3190 1090 167 114 0 chr1 172628419 172628646 -70035707 - L1PB3 LINE L1 -3 6151 5899 215 297 16 0 chr1 172628807 172628871 -70035482 + MIR SINE MIR 65 129 -133 1660 230 31 34 chr1 172628882 172629329 -70035024 + MER21B LTR ERV1 1 446 -417 1566 202 42 25 chr1 172629354 172629711 -70034642 - MER21B LTR ERV1 -12 851 489 383 195 14 184 chr1 172629712 172629854 -70034499 + MER21B LTR ERV1 384 573 -358 996 264 56 3 chr1 172629920 172630223 -70034130 + MER21B LTR ERV1 460 778 -85 309 321 69 57 chr1 172630425 172630645 -70033708 - L3b LINE CR1 -137 1446 1219 2319 106 6 6 chr1 172630645 172630957 -70033396 - AluSx SINE Alu 0 312 1 309 321 69 57 chr1 172630957 172631054 -70033299 - L3b LINE CR1 -364 1219 1125 999 94 0 0 chr1 172631713 172631840 -70032513 + AluSg SINE Alu 1 127 -183 1946 100 8 0 chr1 172631840 172632099 -70032254 + AluSp SINE Alu 35 295 -18 394 223 64 11 chr1 172632338 172632432 -70031921 - L2 LINE L2 -538 2776 2678 209 301 133 0 chr1 172632434 172632517 -70031836 - L2 LINE L2 -749 2565 2472 445 179 116 9 chr1 172634852 172634964 -70029389 + FLAM_A SINE Alu 2 125 -8 817 218 5 51 chr1 172635132 172635329 -70029024 - MER5A DNA MER1_type -1 188 1 515 255 202 19 chr1 172635419 172635627 -70028726 + MIR SINE MIR 17 262 0 216 0 0 0 chr1 172635939 172635963 -70028390 + (A)n Simple_repeat Simple_repeat 1 24 0 234 279 87 29 chr1 172636225 172636329 -70028024 + L3b LINE CR1 1276 1385 -198 * 549 256 43 60 chr1 172636319 172636553 -70027800 - L2 LINE L2 -1 3312 3083 433 286 166 35 chr1 172636587 172636846 -70027507 - L2 LINE L2 -372 2942 2650 6039 138 28 23 chr1 172637421 172637591 -70026762 - Ricksha_a DNA DNA -2078 1173 1005 1801 173 0 23 chr1 172637591 172637891 -70026462 + AluJb SINE Alu 1 293 -19 6039 138 28 23 chr1 172637891 172638514 -70025839 - Ricksha_a DNA DNA -2246 1005 370 2214 121 0 3 chr1 172638514 172638819 -70025534 - AluSx SINE Alu -8 304 1 6039 138 28 23 chr1 172638819 172639190 -70025163 - Ricksha_a DNA DNA -2881 370 2 536 156 0 0 chr1 172639471 172639548 -70024805 + FRAM/FAM SINE Alu 1 76 -100 201 269 30 45 chr1 172640182 172640249 -70024104 + MER5A DNA MER1_type 44 109 -80 282 269 67 25 chr1 172640609 172640728 -70023625 + MER20 DNA MER1_type 90 213 -6 757 162 10 5 chr1 172641160 172641364 -70022989 + GA-rich Low_complexity Low_complexity 1 205 0 570 149 127 8 chr1 172641364 172641498 -70022855 + L1MA9 LINE L1 6163 6312 0 212 254 298 26 chr1 172642162 172642276 -70022077 + MIR3 SINE MIR 19 163 -45 1768 142 4 0 chr1 172643785 172644046 -70020307 + AluSx SINE Alu 11 272 -40 327 331 165 14 chr1 172644179 172644439 -70019914 + L2 LINE L2 2694 2986 -286 364 226 12 24 chr1 172644439 172644523 -70019830 - L2 LINE L2 0 3313 3231 509 210 42 34 chr1 172644656 172644894 -70019459 + L1MC5 LINE L1 7543 7782 -179 603 212 7 44 chr1 172644898 172645035 -70019318 + FLAM_A SINE Alu 1 132 -10 938 124 12 65 chr1 172645035 172645204 -70019149 + MSTC LTR MaLR 208 367 -61 21 0 0 0 chr1 172645204 172645225 -70019128 + AT_rich Low_complexity Low_complexity 1 21 0 247 272 57 123 chr1 172645397 172645625 -70018728 + L2 LINE L2 3033 3245 -27 246 258 0 16 chr1 172645757 172645819 -70018534 - L2 LINE L2 -1 3312 3252 690 66 0 0 chr1 172647614 172647741 -70016612 + L1PA3 LINE L1 6041 6167 0 304 282 12 12 chr1 172648197 172648282 -70016071 - L2 LINE L2 0 3272 3188 234 0 0 0 chr1 172648666 172648692 -70015661 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 255 313 38 69 chr1 172649981 172650112 -70014241 - MIR3 SINE MIR -1 207 81 21 57 0 0 chr1 172650907 172650942 -70013411 + AT_rich Low_complexity Low_complexity 1 35 0 314 307 68 45 chr1 172652051 172652227 -70012126 - MIR3 SINE MIR -14 194 15 426 184 184 15 chr1 172652451 172652587 -70011766 + MER103 DNA DNA 8 166 0 231 271 34 0 chr1 172652997 172653056 -70011297 - MIR SINE MIR -12 250 190 218 244 24 85 chr1 172653055 172653137 -70011216 - MIR SINE MIR -182 80 4 * 1950 132 7 27 chr1 172654810 172655106 -70009247 + AluSq SINE Alu 1 290 -23 456 265 16 43 chr1 172655122 172655379 -70008974 - HAL1 LINE L1 -1267 1240 991 1223 253 14 37 chr1 172655535 172655883 -70008470 + MLT1H LTR MaLR 15 354 -195 1605 103 0 0 chr1 172656161 172656364 -70007989 + AluSx SINE Alu 1 203 -109 634 339 97 21 chr1 172656475 172657033 -70007320 - L2 LINE L2 -687 2627 2028 2081 144 3 3 chr1 172657226 172657531 -70006822 + AluSx SINE Alu 1 305 -7 652 263 95 35 chr1 172658720 172659058 -70005295 - MLT1K LTR MaLR -26 562 205 202 259 0 17 chr1 172659275 172659333 -70005020 + MIR SINE MIR 201 257 -5 268 254 16 0 chr1 172660470 172660533 -70003820 + L2 LINE L2 3174 3237 -35 714 126 0 0 chr1 172660817 172660928 -70003425 + FLAM_A SINE Alu 18 128 -14 447 224 208 0 chr1 172661675 172661800 -70002553 + MER5A DNA MER1_type 36 186 -3 321 269 0 13 chr1 172661838 172661916 -70002437 - MER5B DNA MER1_type -52 126 50 211 255 0 0 chr1 172662013 172662064 -70002289 - MER5A DNA MER1_type -83 106 56 1955 187 31 29 chr1 172662282 172662736 -70001617 + MLT1C LTR MaLR 1 455 -12 259 259 175 42 chr1 172663110 172663253 -70001100 + MIR SINE MIR 33 194 -68 2161 112 0 3 chr1 172663305 172663600 -70000753 + AluSx SINE Alu 1 294 -18 831 72 0 0 chr1 172663600 172663711 -70000642 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 2386 48 48 0 chr1 172663823 172664116 -70000237 - AluY SINE Alu -4 307 1 273 29 0 0 chr1 172664560 172664594 -69999759 + (TG)n Simple_repeat Simple_repeat 2 35 0 182 100 0 0 chr1 172664868 172664898 -69999455 + L2 LINE L2 3279 3308 -5 325 226 131 65 chr1 172665254 172665422 -69998931 + LTR67 LTR ERVL 369 547 -10 194 0 39 0 chr1 172666039 172666065 -69998288 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2119 116 0 0 chr1 172666964 172667283 -69997070 - AluSx SINE Alu 0 319 1 800 158 0 0 chr1 172667531 172667651 -69996702 + FLAM_C SINE Alu 5 124 -19 186 43 0 0 chr1 172667667 172667690 -69996663 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1001 229 241 40 chr1 172668203 172668393 -69995960 + MLT1E LTR MaLR 1 152 -441 351 0 0 0 chr1 172668393 172668432 -69995921 + (TC)n Simple_repeat Simple_repeat 1 39 0 * 369 0 0 0 chr1 172668431 172668472 -69995881 + (CA)n Simple_repeat Simple_repeat 1 41 0 1001 229 241 40 chr1 172668432 172668775 -69995578 + MLT1E LTR MaLR 152 593 0 185 327 135 0 chr1 172668775 172668879 -69995474 + MIR SINE MIR 139 256 -6 2143 109 10 0 chr1 172669163 172669457 -69994896 + AluSg SINE Alu 1 297 -13 786 282 123 76 chr1 172669714 172670679 -69993674 - L2 LINE L2 -1 3271 2253 248 278 46 5 chr1 172670671 172670780 -69993573 + MIR SINE MIR 57 144 -64 * 561 195 26 0 chr1 172670963 172671117 -69993236 + GA-rich Low_complexity Low_complexity 1 158 0 297 253 0 0 chr1 172671111 172671198 -69993155 + G-rich Low_complexity Low_complexity 2 88 0 * 514 163 14 12 chr1 172671306 172671576 -69992777 + AluJ SINE Alu 2 320 0 588 169 114 139 chr1 172671576 172671725 -69992628 - LTR37A LTR ERV1 -19 407 256 2176 214 95 14 chr1 172671725 172672281 -69992072 + MER77 LTR ERV1 1 601 -4 588 169 114 139 chr1 172672281 172672499 -69991854 - LTR37A LTR ERV1 -170 256 49 201 182 0 0 chr1 172672824 172672857 -69991496 + (TA)n Simple_repeat Simple_repeat 1 33 0 312 296 23 0 chr1 172672858 172672946 -69991407 - L1MC4 LINE L1 -1339 6703 6614 351 300 0 0 chr1 172672960 172673050 -69991303 - L1MC4 LINE L1 -1339 6703 6614 603 258 78 12 chr1 172673544 172673711 -69990642 + MER5B DNA MER1_type 1 178 0 536 186 11 38 chr1 172674249 172674432 -69989921 + GA-rich Low_complexity Low_complexity 3 180 0 1984 147 0 26 chr1 172674513 172674807 -69989546 + AluSx SINE Alu 1 288 -24 786 91 0 0 chr1 172674807 172674928 -69989425 + (GGGAA)n Simple_repeat Simple_repeat 2 122 0 1984 147 0 26 chr1 172674928 172674945 -69989408 + AluSx SINE Alu 288 304 -8 484 79 53 13 chr1 172675648 172675724 -69988629 - MADE1 DNA Mariner 0 80 2 514 184 10 10 chr1 172677042 172677145 -69987208 + FLAM_C SINE Alu 39 141 -2 524 294 182 9 chr1 172677165 172677379 -69986974 + MIR SINE MIR 12 262 0 360 260 77 32 chr1 172677484 172677668 -69986685 - MIR SINE MIR -62 146 5 3033 138 32 67 chr1 172678233 172678849 -69985504 + LTR49 LTR ERV1 1 595 0 202 268 0 18 chr1 172678894 172678950 -69985403 + L2 LINE L2 3165 3219 -94 320 118 17 17 chr1 172679235 172679301 -69985052 + MER4E LTR ERV1 3 59 -551 1956 207 37 24 chr1 172679301 172679890 -69984463 + pTR5 LTR ERV1 748 1344 -1094 4513 133 49 39 chr1 172679906 172680845 -69983508 + pTR5 LTR ERV1 270 2605 -1 2543 141 41 7 chr1 172680845 172681364 -69982989 + MER4E LTR ERV1 63 766 0 23 0 0 0 chr1 172681411 172681434 -69982919 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr1 172683083 172683109 -69981244 + AT_rich Low_complexity Low_complexity 1 26 0 1633 216 120 34 chr1 172683128 172683720 -69980633 + LTR48B LTR ERV1 2 644 0 1458 211 54 85 chr1 172683780 172684331 -69980022 + LTR8A LTR ERV1 194 727 0 41508 42 5 4 chr1 172684712 172689441 -69974912 - L1PA4 LINE L1 -3 6152 1414 2487 18 0 0 chr1 172689441 172689714 -69974639 - AluYa5 SINE Alu 0 311 39 41508 42 5 4 chr1 172689714 172691125 -69973228 - L1PA4 LINE L1 -4741 1414 7 2969 173 30 83 chr1 172691408 172692170 -69972183 + MER72 LTR ERV1 1 722 0 181 284 147 59 chr1 172692551 172692653 -69971700 + L2 LINE L2 3162 3272 0 330 206 0 0 chr1 172692809 172692882 -69971471 + (TA)n Simple_repeat Simple_repeat 1 73 0 1479 196 44 0 chr1 172693057 172693307 -69971046 + AluJo SINE Alu 21 281 -31 30 69 0 0 chr1 172693307 172693365 -69970988 + AT_rich Low_complexity Low_complexity 1 58 0 2403 117 37 3 chr1 172693713 172694065 -69970288 - THE1B LTR MaLR 0 364 1 1354 169 0 0 chr1 172694297 172694504 -69969849 + AluJb SINE Alu 85 291 -21 677 96 19 0 chr1 172694600 172694704 -69969649 + HY1 scRNA scRNA 6 111 -1 625 276 87 37 chr1 172695017 172695372 -69968981 + MLT1J1 LTR MaLR 72 444 -2 3750 172 7 10 chr1 172695418 172696091 -69968262 - LTR51 LTR ERV1 0 671 1 27 0 0 0 chr1 172696177 172696204 -69968149 + AT_rich Low_complexity Low_complexity 1 27 0 1556 141 8 80 chr1 172696207 172696578 -69967775 - MER4A LTR ERV1 0 664 261 560 111 10 20 chr1 172696578 172696677 -69967676 - MER4A LTR ERV1 -566 98 1 890 215 6 0 chr1 172697189 172697352 -69967001 + FAM SINE Alu 2 165 -10 207 208 14 14 chr1 172698199 172698250 -69966103 + A-rich Low_complexity Low_complexity 2 55 -18 694 101 10 0 chr1 172698250 172698349 -69966004 + HY3 scRNA scRNA 1 100 -1 207 208 14 14 chr1 172698349 172698369 -69965984 + A-rich Low_complexity Low_complexity 54 73 0 673 149 0 0 chr1 172698369 172698483 -69965870 - MER2 DNA MER2_type -135 210 97 717 165 12 37 chr1 172698484 172698713 -69965640 + MER7A DNA MER2_type 2 329 -7 398 260 10 0 chr1 172698717 172698813 -69965540 - MER2 DNA MER2_type -247 98 2 424 283 10 0 chr1 172699077 172699176 -69965177 + MIR SINE MIR 43 142 -120 238 316 103 35 chr1 172699231 172699405 -69964948 + L2 LINE L2 2226 2411 -903 232 290 113 35 chr1 172701085 172701385 -69962968 - L1ME LINE L1 -279 5887 5552 1531 177 13 44 chr1 172701413 172701729 -69962624 - AluJo SINE Alu -1 311 6 356 345 44 40 chr1 172701744 172701834 -69962519 - L1ME LINE L1 -656 5508 5420 1671 210 34 72 chr1 172701834 172702386 -69961967 - LTR26B LTR ERV1 0 531 1 356 345 44 40 chr1 172702386 172702406 -69961947 - L1ME LINE L1 -744 5420 5402 360 0 0 0 chr1 172702406 172702446 -69961907 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 1809 172 7 0 chr1 172702446 172702736 -69961617 - AluJb SINE Alu -20 292 1 356 345 44 40 chr1 172702736 172702872 -69961481 - L1ME LINE L1 -761 5403 5259 1439 115 41 0 chr1 172702874 172703092 -69961261 + MER30 DNA MER1_type 4 230 0 489 218 173 45 chr1 172703130 172703332 -69961021 + LTR48 LTR ERV1 1 228 -559 234 105 0 0 chr1 172703345 172703383 -69960970 + (TC)n Simple_repeat Simple_repeat 2 39 0 342 45 0 0 chr1 172703383 172703427 -69960926 + (CA)n Simple_repeat Simple_repeat 1 44 0 1308 205 53 26 chr1 172703475 172703855 -69960498 + LTR48B LTR ERV1 253 642 -2 508 290 68 18 chr1 172703872 172704268 -69960085 - L1ME LINE L1 -930 5216 4801 318 319 47 16 chr1 172704336 172704527 -69959826 - L1ME LINE L1 -1438 4708 4512 1531 175 13 82 chr1 172704536 172704925 -69959428 + LTR9 LTR ERV1 1 362 -250 760 218 132 27 chr1 172705002 172705259 -69959094 + LTR9 LTR ERV1 316 599 -13 407 319 61 42 chr1 172705284 172705569 -69958784 - L1ME LINE L1 -1651 4495 4200 2229 130 0 0 chr1 172705569 172705868 -69958485 - AluSx SINE Alu -13 299 1 407 319 61 42 chr1 172705868 172705942 -69958411 - L1ME LINE L1 -1946 4200 4129 234 325 0 0 chr1 172706040 172706160 -69958193 - L1ME LINE L1 -3576 2570 2451 264 215 0 0 chr1 172706316 172706381 -69957972 - L1M4 LINE L1 -2658 3488 3424 2385 147 41 30 chr1 172706398 172706492 -69957861 - L1MC1 LINE L1 0 6333 6242 2179 186 34 5 chr1 172706492 172706906 -69957447 + MSTB LTR MaLR 1 426 0 2385 147 41 30 chr1 172706906 172707252 -69957101 - L1MC1 LINE L1 -91 6242 5888 3289 199 11 6 chr1 172707252 172708381 -69955972 - L1MC1 LINE L1 -652 5681 4549 231 256 47 0 chr1 172708416 172708502 -69955851 + L1MC4 LINE L1 6614 6703 -1339 252 143 0 0 chr1 172708502 172708544 -69955809 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 458 190 2 0 chr1 172708549 172708654 -69955699 + L1M4 LINE L1 4777 4883 -1263 222 261 0 0 chr1 172708654 172708700 -69955653 + (TA)n Simple_repeat Simple_repeat 1 46 0 254 303 0 0 chr1 172708712 172708801 -69955552 - L1MCa LINE L1 -1275 5151 5063 285 182 0 0 chr1 172708819 172708874 -69955479 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 14809 57 1 0 chr1 172708974 172710979 -69953374 + L1P LINE L1 1894 3901 -2245 1003 264 110 19 chr1 172711651 172712108 -69952245 - MLT1H LTR MaLR -2 547 6 775 144 0 0 chr1 172712196 172712328 -69952025 - L1MB3 LINE L1 -2 6181 6050 584 129 0 10 chr1 172712342 172712443 -69951910 - L1MA8 LINE L1 -5 6286 6187 479 152 85 7 chr1 172712444 172712568 -69951785 - L1MB2 LINE L1 -108 6063 5936 182 245 0 20 chr1 172712811 172712860 -69951493 - L2 LINE L2 -4 3268 3221 13171 148 19 8 chr1 172713426 172715265 -69949088 - L1P LINE L1 -780 5366 3497 180 0 0 0 chr1 172715265 172715285 -69949068 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 13171 148 19 8 chr1 172715285 172715744 -69948609 - L1P LINE L1 -2649 3497 3044 1557 242 15 3 chr1 172715766 172716105 -69948248 - MER66-int LTR ERV1 -4516 2160 1818 233 118 0 0 chr1 172716226 172716260 -69948093 + MSTB1 LTR MaLR 399 432 0 1024 144 70 27 chr1 172716261 172716448 -69947905 - L1MC1 LINE L1 -96 6237 6043 300 70 0 0 chr1 172716522 172716565 -69947788 + (TG)n Simple_repeat Simple_repeat 2 44 0 981 195 15 24 chr1 172716571 172716776 -69947577 - AluJo SINE Alu -107 205 3 8654 197 72 24 chr1 172716779 172718130 -69946223 - L1MCa LINE L1 -1584 4842 3557 2095 126 30 0 chr1 172718130 172718432 -69945921 - AluSq SINE Alu -2 311 1 8654 197 72 24 chr1 172718432 172719937 -69944416 - L1MCa LINE L1 -2869 3557 2125 1918 176 0 3 chr1 172719937 172720239 -69944114 - AluJb SINE Alu -11 301 1 1991 86 22 22 chr1 172720244 172720513 -69943840 - AluSx SINE Alu -12 300 32 8654 197 72 24 chr1 172720513 172721543 -69942810 - L1MCa LINE L1 -4304 2122 762 2852 128 12 10 chr1 172721543 172722028 -69942325 + L1MA3 LINE L1 2448 2933 -4632 * 9795 155 15 24 chr1 172722021 172724037 -69940316 + L1MA3 LINE L1 4938 6942 -743 2130 106 24 37 chr1 172724037 172724409 -69939944 + L1MA3 LINE L1 7348 7718 -6 366 234 20 0 chr1 172724441 172724554 -69939799 + L1M4 LINE L1 4735 4855 -1291 189 337 47 0 chr1 172724937 172725023 -69939330 - L2 LINE L2 -274 2998 2909 6876 93 8 10 chr1 172725335 172726341 -69938012 - L1MA2 LINE L1 0 6304 5301 462 235 50 8 chr1 172726342 172726461 -69937892 + MIR SINE MIR 84 207 -55 5738 90 15 2 chr1 172727246 172728047 -69936306 - L1PA14 LINE L1 -1 6160 5350 225 250 159 23 chr1 172728391 172728479 -69935874 + L2 LINE L2 3173 3272 0 185 318 127 0 chr1 172728959 172729069 -69935284 + MIR3 SINE MIR 77 200 -8 1090 170 35 52 chr1 172729153 172729383 -69934970 - AluJo SINE Alu -1 311 86 1956 138 0 3 chr1 172729855 172730138 -69934215 - AluSx SINE Alu -19 293 12 394 200 0 22 chr1 172730143 172730233 -69934120 - L1MC3 LINE L1 -11 7774 7687 1197 200 71 29 chr1 172730234 172730514 -69933839 - MLT1A1 LTR MaLR -58 307 16 1016 198 43 35 chr1 172730521 172730779 -69933574 - L1MC3 LINE L1 -346 7439 7180 303 289 0 0 chr1 172730785 172730861 -69933492 - MLT1F1 LTR MaLR -457 110 35 337 138 274 8 chr1 172730893 172731018 -69933335 - L1MC3 LINE L1 -706 7079 6889 1663 167 27 7 chr1 172731158 172731451 -69932902 - AluJo SINE Alu -8 304 6 298 333 19 0 chr1 172731931 172732036 -69932317 - MLT1J2 LTR MaLR 0 450 344 1853 86 94 0 chr1 172732059 172732315 -69932038 + AluSq SINE Alu 1 280 -33 400 240 33 63 chr1 172732320 172732521 -69931832 - MLT1J1 LTR MaLR -223 227 32 370 327 96 60 chr1 172732600 172732884 -69931469 + L2 LINE L2 2035 2307 -1007 1876 152 13 3 chr1 172732884 172733186 -69931167 - AluJb SINE Alu -7 305 1 370 327 96 60 chr1 172733186 172733602 -69930751 + L2 LINE L2 2307 2760 -554 2643 187 43 15 chr1 172734217 172734253 -69930100 - MLT2B3 LTR ERVL -3 551 517 591 51 0 0 chr1 172734253 172734332 -69930021 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 2643 187 43 15 chr1 172734332 172734831 -69929522 - MLT2B3 LTR ERVL -37 517 1 331 269 21 11 chr1 172735153 172735246 -69929107 - MLT1J LTR MaLR -44 467 374 706 267 64 10 chr1 172735361 172735563 -69928790 - MLT1J LTR MaLR -298 213 1 24 0 0 0 chr1 172735796 172735820 -69928533 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr1 172737340 172737362 -69926991 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 208 139 0 0 chr1 172738168 172738204 -69926149 + (T)n Simple_repeat Simple_repeat 1 36 0 250 250 0 0 chr1 172739561 172739629 -69924724 + (TA)n Simple_repeat Simple_repeat 2 69 0 385 200 313 36 chr1 172739886 172740081 -69924272 + LTR50 LTR ERVL 41 289 -506 472 273 61 12 chr1 172740352 172740517 -69923836 + LTR33A LTR ERVL 351 523 0 387 339 18 46 chr1 172740678 172740896 -69923457 + L2 LINE L2 2851 3062 -210 856 254 44 0 chr1 172741168 172741373 -69922980 - MIR SINE MIR -15 247 34 219 273 84 63 chr1 172741506 172741649 -69922704 - L2 LINE L2 -183 3089 2944 456 19 0 0 chr1 172741726 172741779 -69922574 + (TG)n Simple_repeat Simple_repeat 2 54 0 27 49 0 0 chr1 172742504 172742545 -69921808 + AT_rich Low_complexity Low_complexity 1 41 0 249 294 68 20 chr1 172742587 172742733 -69921620 - L1ME4a LINE L1 -139 5982 5830 1291 290 111 34 chr1 172743125 172743746 -69920607 + L2 LINE L2 1745 2413 -901 37060 90 17 7 chr1 172743750 172749831 -69914522 - L1PA6 LINE L1 -5 6149 11 2153 187 70 14 chr1 172750003 172750485 -69913868 + LTR22 LTR ERVK 1 509 0 5216 121 8 3 chr1 172750485 172751235 -69913118 + HERVK22 LTR ERVK 1 754 -6083 21055 101 17 2 chr1 172751545 172754464 -69909889 + HERVK22 LTR ERVK 2327 5289 -1548 1652 106 0 47 chr1 172754462 172754717 -69909636 + HERVK22 LTR ERVK 6595 6837 0 * 2193 154 79 26 chr1 172754717 172755171 -69909182 + LTR22 LTR ERVK 1 478 -31 14466 144 14 1 chr1 172755177 172757257 -69907096 + L1PA11 LINE L1 2897 5015 -1159 5940 132 79 27 chr1 172757257 172758460 -69905893 - MER11A LTR ERVK 0 1266 1 14466 144 14 1 chr1 172758460 172759636 -69904717 + L1PA11 LINE L1 5015 6174 0 1213 132 21 0 chr1 172759636 172759825 -69904528 + L1PB4 LINE L1 5771 5963 -193 1041 239 51 28 chr1 172759821 172760252 -69904101 + L1ME LINE L1 649 1089 -4981 * 229 224 35 0 chr1 172760274 172760332 -69904021 + L1ME2 LINE L1 6071 6130 -34 2495 34 0 0 chr1 172760334 172760628 -69903725 + L1PA3 LINE L1 5862 6155 0 2122 118 7 0 chr1 172761041 172761338 -69903015 + AluSq SINE Alu 1 299 -14 538 335 42 19 chr1 172761352 172761564 -69902789 + L2 LINE L2 2574 2790 -524 275 305 134 41 chr1 172761617 172761863 -69902490 + L2 LINE L2 3029 3297 -16 184 347 0 27 chr1 172761856 172761931 -69902422 - MIR SINE MIR -150 112 40 * 302 302 35 0 chr1 172762640 172762726 -69901627 + MIR SINE MIR 91 179 -83 290 357 16 24 chr1 172763650 172763776 -69900577 - MER5B DNA MER1_type -1 177 53 350 280 184 0 chr1 172766385 172766510 -69897843 + L2 LINE L2 3121 3268 -4 211 308 140 19 chr1 172766561 172766668 -69897685 - L2 LINE L2 -14 3299 3180 379 302 117 12 chr1 172766882 172767111 -69897242 - L3 LINE CR1 -125 1452 1137 1996 140 16 25 chr1 172768061 172768376 -69895977 - AluSx SINE Alu 0 312 1 188 132 0 26 chr1 172770193 172770231 -69894122 + (GGAA)n Simple_repeat Simple_repeat 2 38 0 404 192 0 13 chr1 172772210 172772288 -69892065 - MER81 DNA DNA -37 77 1 264 223 66 6 chr1 172772356 172772522 -69891831 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 294 229 66 0 chr1 172772415 172772581 -69891772 + (TA)n Simple_repeat Simple_repeat 2 178 0 2919 131 22 20 chr1 172773860 172774363 -69889990 - L1MC1 LINE L1 -14 6319 5816 301 316 10 0 chr1 172774471 172774569 -69889784 + MIR3 SINE MIR 15 113 -95 323 264 195 4 chr1 172775068 172775427 -69888926 - LTR33 LTR ERVL -11 510 41 187 171 29 0 chr1 172776995 172777030 -69887323 - MIR3 SINE MIR -7 201 166 22 56 0 0 chr1 172777110 172777146 -69887207 + AT_rich Low_complexity Low_complexity 1 36 0 832 282 108 31 chr1 172777502 172777917 -69886436 + MLT1J2 LTR MaLR 1 447 -3 2248 112 0 3 chr1 172778026 172778330 -69886023 - AluSx SINE Alu -8 304 2 2323 101 0 0 chr1 172778475 172778773 -69885580 - AluSx SINE Alu -14 298 1 254 373 0 18 chr1 172779018 172779128 -69885225 + MIR3 SINE MIR 9 116 -92 417 188 7 4 chr1 172779476 172779610 -69884743 - MER53 DNA DNA 0 189 3 491 328 27 27 chr1 172779676 172779932 -69884421 - MLT1J LTR MaLR -255 256 1 272 152 22 0 chr1 172779935 172779981 -69884372 - MSTD LTR MaLR 0 396 350 552 214 0 9 chr1 172779982 172780094 -69884259 - MLT1A1 LTR MaLR -254 111 1 204 361 68 21 chr1 172780341 172780532 -69883821 - L2 LINE L2 -212 3060 2861 198 279 0 0 chr1 172780686 172780729 -69883624 - L2 LINE L2 -9 3263 3221 243 261 52 127 chr1 172781122 172781207 -69883146 + MIR SINE MIR 21 94 -168 2067 129 3 3 chr1 172781207 172781502 -69882851 - AluSx SINE Alu -17 295 1 243 261 52 127 chr1 172781502 172781550 -69882803 + MIR SINE MIR 94 144 -118 882 252 103 51 chr1 172781899 172781967 -69882386 + MLT1D LTR MaLR 55 118 -387 1434 176 148 0 chr1 172781967 172782223 -69882130 + AluJb SINE Alu 2 295 -17 882 252 103 51 chr1 172782223 172782583 -69881770 + MLT1D LTR MaLR 118 505 0 511 270 15 15 chr1 172782625 172782762 -69881591 - MIR SINE MIR -102 160 24 752 189 0 8 chr1 172782879 172783011 -69881342 - FLAM_C SINE Alu -2 131 1 199 292 11 56 chr1 172783014 172783103 -69881250 + MIR SINE MIR 178 262 0 2239 101 16 10 chr1 172783378 172783685 -69880668 + AluSc SINE Alu 1 309 0 293 185 228 0 chr1 172784098 172784190 -69880163 - L2 LINE L2 0 3313 3201 1554 184 82 0 chr1 172784326 172784657 -69879696 - MLT1A1 LTR MaLR -7 358 1 360 87 14 29 chr1 172785321 172785390 -69878963 + L1MA10 LINE L1 6264 6331 -3 321 68 0 0 chr1 172785899 172785943 -69878410 + (T)n Simple_repeat Simple_repeat 1 44 0 383 271 8 75 chr1 172786875 172787008 -69877345 - L2 LINE L2 -5 3308 3185 1973 137 18 0 chr1 172787101 172787379 -69876974 + AluJb SINE Alu 1 283 -29 375 23 0 0 chr1 172787379 172787423 -69876930 + (CA)n Simple_repeat Simple_repeat 2 45 0 8009 135 22 50 chr1 172787462 172788946 -69875407 + Ricksha DNA DNA 232 1673 -1573 1720 172 86 11 chr1 172788946 172789306 -69875047 + MLT1F LTR MaLR 156 542 0 1791 264 73 14 chr1 172789753 172790313 -69874040 + MLT1E LTR MaLR 1 593 0 293 235 0 12 chr1 172790863 172790948 -69873405 + MER103 DNA DNA 2 85 -81 2108 118 14 0 chr1 172792245 172792541 -69871812 + AluSq SINE Alu 1 300 -13 219 330 85 0 chr1 172792666 172792760 -69871593 + MIR SINE MIR 14 115 -147 290 326 122 14 chr1 172793178 172793325 -69871028 + L2 LINE L2 3103 3265 -7 208 282 0 47 chr1 172793330 172793415 -69870938 + GA-rich Low_complexity Low_complexity 4 84 0 307 326 0 12 chr1 172794060 172794146 -69870207 - MIR3 SINE MIR -21 187 103 1221 62 6 0 chr1 172794396 172794557 -69869796 - L1PA5 LINE L1 -1 6153 5992 438 310 43 16 chr1 172794625 172794809 -69869544 + MIR SINE MIR 4 192 -70 503 315 65 15 chr1 172795496 172795696 -69868657 - MIR SINE MIR 0 262 53 4002 83 9 5 chr1 172795713 172796265 -69868088 + MER41A LTR ERV1 1 554 0 2106 129 135 5 chr1 172796342 172796721 -69867632 - MSTA LTR MaLR 0 428 1 349 228 8 32 chr1 172797118 172797227 -69867126 + (TA)n Simple_repeat Simple_repeat 2 109 -12 8847 46 3 2 chr1 172797227 172798297 -69866056 - MER11C LTR ERVK 0 1071 1 349 228 8 32 chr1 172798297 172798310 -69866043 + (TA)n Simple_repeat Simple_repeat 109 121 0 253 246 0 18 chr1 172799516 172799573 -69864780 + GA-rich Low_complexity Low_complexity 2 57 0 458 248 53 34 chr1 172799945 172800151 -69864202 - L1ME LINE L1 -368 5753 5544 22 0 0 0 chr1 172800302 172800324 -69864029 + AT_rich Low_complexity Low_complexity 1 22 0 857 231 26 49 chr1 172801574 172801921 -69862432 - LTR37A LTR ERV1 -12 414 76 613 209 10 23 chr1 172801936 172802151 -69862202 - MER106B DNA MER1_type 0 236 24 639 249 21 60 chr1 172802324 172802557 -69861796 + MER58A DNA MER1_type 1 224 0 213 271 21 31 chr1 172804023 172804119 -69860234 + GA-rich Low_complexity Low_complexity 1 95 0 259 284 161 77 chr1 172804864 172805269 -69859084 - L2 LINE L2 -1217 2097 1659 185 212 0 0 chr1 172805318 172805351 -69859002 + MIR SINE MIR 159 191 -71 3530 126 83 21 chr1 172806212 172806919 -69857434 - Tigger3(Golem) DNA MER2_type -2 3027 2277 604 193 0 9 chr1 172806910 172807019 -69857334 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 2176 179 41 35 chr1 172808389 172808853 -69855500 - MLT1C LTR MaLR 0 467 1 245 351 0 0 chr1 172808924 172809001 -69855352 - MIR3 SINE MIR -9 199 123 703 265 135 0 chr1 172809683 172809913 -69854440 + MIR SINE MIR 2 262 0 502 321 18 6 chr1 172810257 172810422 -69853931 + MIR3 SINE MIR 31 197 -11 2425 113 11 30 chr1 172810947 172811318 -69853035 + THE1B LTR MaLR 1 364 0 10700 103 37 3 chr1 172811318 172812846 -69851507 + THE1B-int LTR MaLR 1 1580 0 2637 113 0 0 chr1 172812846 172813210 -69851143 + THE1B LTR MaLR 1 364 0 3557 253 30 40 chr1 172813271 172814813 -69849540 + L1ME2 LINE L1 2328 3854 -2292 1805 168 7 13 chr1 172814818 172815128 -69849225 + AluJb SINE Alu 1 308 -4 2271 175 130 2 chr1 172815139 172815578 -69848775 - LTR44 LTR ERV1 0 519 25 6391 195 58 32 chr1 172816045 172817988 -69846365 - LTR44-int LTR ERV1 -243 5838 3895 2683 181 25 72 chr1 172817988 172818410 -69845943 - LOR1-int LTR ERV1 -2509 4167 3727 3681 69 18 0 chr1 172818410 172818901 -69845452 - L1PA5 LINE L1 0 6154 5655 2683 181 25 72 chr1 172818901 172819961 -69844392 - LOR1-int LTR ERV1 -2949 3727 1188 230 114 0 23 chr1 172820990 172821034 -69843319 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 186 71 0 0 chr1 172821116 172821144 -69843209 + (A)n Simple_repeat Simple_repeat 1 28 0 2344 159 91 46 chr1 172821408 172821905 -69842448 - LTR44 LTR ERV1 0 519 1 392 176 123 156 chr1 172821934 172822050 -69842303 + L1ME2 LINE L1 3915 4033 -2113 2353 84 3 0 chr1 172822050 172822347 -69842006 + AluY SINE Alu 1 298 -13 392 176 123 156 chr1 172822347 172822628 -69841725 + L1ME2 LINE L1 4033 4299 -1847 * 3462 242 18 2 chr1 172822600 172823505 -69840848 + L1P LINE L1 2739 3657 -2489 1631 147 23 33 chr1 172823505 172823805 -69840548 - THE1C LTR MaLR 0 375 79 1286 82 6 6 chr1 172823827 172824010 -69840343 - THE1C-int LTR MaLR 0 1580 1398 1192 231 43 32 chr1 172824020 172824599 -69839754 + L1ME2 LINE L1 5015 5613 -551 228 155 35 17 chr1 172824619 172824677 -69839676 - L1MCa LINE L1 -4362 2064 2006 301 333 0 0 chr1 172824694 172824784 -69839569 - L1MC4 LINE L1 -1339 6703 6614 243 0 0 0 chr1 172824784 172824811 -69839542 + (CA)n Simple_repeat Simple_repeat 2 28 0 1980 223 63 20 chr1 172824814 172825320 -69839033 + L1ME2 LINE L1 5603 6130 -34 2434 90 0 0 chr1 172825394 172825694 -69838659 - AluSq SINE Alu -13 300 1 307 207 0 0 chr1 172827059 172827117 -69837236 + L2 LINE L2 3256 3313 0 13999 176 13 9 chr1 172827569 172831058 -69833295 + L1PB1 LINE L1 2293 5765 -386 420 20 0 0 chr1 172831058 172831107 -69833246 + (TA)n Simple_repeat Simple_repeat 1 49 0 216 0 0 0 chr1 172831106 172831130 -69833223 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 13999 176 13 9 chr1 172831107 172831489 -69832864 + L1PB1 LINE L1 5765 6149 -2 298 284 0 0 chr1 172831670 172831758 -69832595 - MIR SINE MIR -27 235 148 1570 138 87 21 chr1 172831767 172832144 -69832209 - L1PA16 LINE L1 0 6166 5730 351 231 44 9 chr1 172832145 172832251 -69832102 - MIR SINE MIR -63 145 4 1853 145 12 58 chr1 172832285 172832610 -69831743 - AluJb SINE Alu -2 310 1 725 216 0 0 chr1 172832673 172832798 -69831555 + Tigger3(Golem) DNA MER2_type 1 125 -2904 1494 156 4 27 chr1 172832811 172833074 -69831279 + Tigger3(Golem) DNA MER2_type 2772 3028 -1 285 317 110 88 chr1 172833355 172833674 -69830679 + LTR67 LTR ERVL 2 327 -230 230 136 0 68 chr1 172833844 172833903 -69830450 - MLT1D LTR MaLR 0 505 451 836 173 23 0 chr1 172833909 172834042 -69830311 + AluJo SINE Alu 1 136 -176 801 219 211 4 chr1 172834055 172834291 -69830062 - MLT1D LTR MaLR -53 452 168 262 185 0 19 chr1 172834291 172834345 -69830008 + Alu SINE Alu 1 53 -255 404 282 107 75 chr1 172834413 172834745 -69829608 + ERVL LTR ERVL 1686 2040 -3015 983 259 24 8 chr1 172834913 172835164 -69829189 + ERVL LTR ERVL 2335 2589 -3175 1671 330 81 34 chr1 172835341 172836505 -69827848 + ERVL LTR ERVL 2782 4044 -1720 1138 295 72 13 chr1 172836511 172836986 -69827367 - L1MEc LINE L1 -5853 543 41 307 290 69 54 chr1 172837206 172837540 -69826813 - L1ME LINE L1 -423 5698 5360 713 226 142 32 chr1 172838101 172838481 -69825872 + L1ME4a LINE L1 5699 6120 -1 21 57 0 0 chr1 172838627 172838662 -69825691 + AT_rich Low_complexity Low_complexity 1 35 0 462 208 28 19 chr1 172838786 172838892 -69825461 + MIR SINE MIR 34 140 -122 261 83 0 0 chr1 172839164 172839200 -69825153 + (A)n Simple_repeat Simple_repeat 1 36 0 345 259 46 9 chr1 172839520 172839628 -69824725 - MER94 DNA DNA -13 121 10 225 258 113 93 chr1 172841087 172841238 -69823115 + L2 LINE L2 3121 3274 -39 210 321 55 55 chr1 172841237 172841346 -69823007 + MIR3 SINE MIR 91 199 -9 * 2083 114 3 17 chr1 172841383 172841682 -69822671 + AluSx SINE Alu 9 303 -9 891 171 7 0 chr1 172841904 172842050 -69822303 + FAM SINE Alu 26 172 -13 549 341 175 22 chr1 172842470 172842922 -69821431 + L3 LINE CR1 249 769 -808 2296 230 114 9 chr1 172842968 172843645 -69820708 + L1ME3 LINE L1 5406 6153 -9 186 209 0 0 chr1 172843655 172843698 -69820655 + (TA)n Simple_repeat Simple_repeat 2 44 0 826 323 219 17 chr1 172843698 172844336 -69820017 + L3 LINE CR1 808 1574 -3 332 302 61 37 chr1 172844608 172844903 -69819450 - L1ME LINE L1 -424 5697 5396 356 207 108 9 chr1 172845285 172845396 -69818957 + L1ME4a LINE L1 5988 6109 -12 1972 142 0 29 chr1 172846698 172847007 -69817346 + AluSx SINE Alu 1 300 -12 464 304 41 27 chr1 172848216 172848436 -69815917 + L2 LINE L2 2668 2890 -424 266 300 88 25 chr1 172850136 172850296 -69814057 + L2 LINE L2 2915 3084 -188 1191 98 133 15 chr1 172850325 172850528 -69813825 - MER30 DNA MER1_type 0 230 4 1415 185 43 3 chr1 172850583 172850886 -69813467 + MER33 DNA MER1_type 10 324 0 332 305 59 25 chr1 172850889 172851007 -69813346 + L2 LINE L2 3151 3272 0 1514 167 93 0 chr1 172851044 172851313 -69813040 + AluJb SINE Alu 1 294 -18 3499 216 51 25 chr1 172852751 172853213 -69811140 + L1MC4a LINE L1 6836 7285 -523 2145 103 7 3 chr1 172853213 172853503 -69810850 + AluSc SINE Alu 1 291 -18 3499 216 51 25 chr1 172853503 172853989 -69810364 + L1MC4a LINE L1 7285 7808 0 2552 51 0 0 chr1 172854019 172854313 -69810040 + AluY SINE Alu 1 294 -17 313 150 83 0 chr1 172854552 172854612 -69809741 - MER5C DNA MER1_type -257 67 3 * 1664 261 65 29 chr1 172854612 172855130 -69809223 - L2 LINE L2 -513 2801 2265 437 337 55 11 chr1 172855268 172855449 -69808904 - MIR SINE MIR -53 209 21 207 293 17 0 chr1 172855534 172855592 -69808761 + MIR3 SINE MIR 147 205 -3 25 0 0 0 chr1 172855762 172855787 -69808566 + AT_rich Low_complexity Low_complexity 1 25 0 231 353 59 0 chr1 172856454 172856539 -69807814 + L2 LINE L2 2996 3085 -187 611 307 74 20 chr1 172856578 172856822 -69807531 + MIR SINE MIR 5 261 -1 194 279 88 15 chr1 172856843 172856911 -69807442 + L2 LINE L2 3138 3210 -62 680 13 0 0 chr1 172858239 172858316 -69806037 - L1P LINE L1 -1904 4242 4166 2000 155 0 10 chr1 172858373 172858677 -69805676 + AluJb SINE Alu 1 301 -11 2562 46 0 3 chr1 172859418 172859724 -69804629 + AluY SINE Alu 2 306 -5 39 0 0 0 chr1 172860712 172860751 -69803602 + AT_rich Low_complexity Low_complexity 1 39 0 1967 93 4 0 chr1 172863834 172864103 -69800250 + AluSp SINE Alu 38 307 0 1153 207 58 0 chr1 172864291 172864566 -69799787 + L1MB4 LINE L1 5886 6176 -4 433 256 185 20 chr1 172864751 172864946 -69799407 + L3 LINE CR1 1328 1554 -23 847 298 33 21 chr1 172865520 172865946 -69798407 + L1ME4a LINE L1 5638 6068 -53 24 0 0 0 chr1 172865970 172865994 -69798359 + AT_rich Low_complexity Low_complexity 1 24 0 2059 59 0 20 chr1 172866108 172866389 -69797964 + AluY SINE Alu 32 284 -27 332 237 252 0 chr1 172866426 172866565 -69797788 - MIR SINE MIR 0 262 89 601 228 83 44 chr1 172868160 172868340 -69796013 + MIR SINE MIR 75 261 -1 2079 251 83 6 chr1 172868348 172869036 -69795317 + L2 LINE L2 2283 3237 -76 1850 164 13 13 chr1 172869124 172869429 -69794924 + AluJo SINE Alu 1 305 -7 1560 105 22 18 chr1 172869469 172869698 -69794655 + MER30 DNA MER1_type 1 230 0 284 298 137 8 chr1 172869787 172869911 -69794442 - MIR SINE MIR -122 140 1 630 313 66 4 chr1 172870098 172870325 -69794028 - MIR SINE MIR -1 261 21 384 253 132 52 chr1 172871762 172871936 -69792417 + MIR3 SINE MIR 21 208 0 919 178 32 95 chr1 172871943 172872292 -69792061 - MER33 DNA MER1_type -4 320 1 555 56 0 0 chr1 172872300 172872371 -69791982 + (TTTCC)n Simple_repeat Simple_repeat 3 73 0 1933 82 86 4 chr1 172872371 172872640 -69791713 - AluSc SINE Alu -16 293 3 431 247 62 27 chr1 172872858 172873004 -69791349 + MLT1J2 LTR MaLR 132 282 -168 1593 166 21 18 chr1 172873022 172873306 -69791047 - AluJo SINE Alu 0 312 28 1871 187 68 2 chr1 172873354 172873797 -69790556 + Charlie4a DNA MER1_type 16 487 -21 227 277 129 0 chr1 172873855 172873956 -69790397 + MLT1J2 LTR MaLR 334 447 -3 530 238 0 8 chr1 172874084 172874206 -69790147 + MER63A DNA MER1_type 90 210 0 1870 123 0 29 chr1 172875090 172875366 -69788987 + AluSx SINE Alu 1 268 -44 342 0 0 0 chr1 172875370 172875408 -69788945 + (CA)n Simple_repeat Simple_repeat 1 38 0 287 139 0 0 chr1 172875633 172875676 -69788677 + MIR SINE MIR 220 262 0 1377 237 72 36 chr1 172876368 172876871 -69787482 - L1MEc LINE L1 -5377 1019 499 627 236 24 19 chr1 172876872 172877080 -69787273 - HAL1 LINE L1 -1162 1345 1137 431 259 35 20 chr1 172877265 172877462 -69786891 - HAL1 LINE L1 -1371 1136 937 420 222 19 105 chr1 172877462 172877624 -69786729 - L2 LINE L2 -2 3311 3164 1982 113 7 14 chr1 172877629 172877935 -69786418 - AluSx SINE Alu 0 304 1 2584 51 0 3 chr1 172878063 172878374 -69785979 - AluY SINE Alu -1 310 1 1233 230 127 34 chr1 172878552 172879026 -69785327 + MLT1L LTR MaLR 14 531 -84 1544 239 43 45 chr1 172879444 172880025 -69784328 + L1MC5 LINE L1 6614 7193 -768 669 298 103 38 chr1 172880229 172881075 -69783278 + L1M4 LINE L1 3917 4828 -1318 746 291 34 17 chr1 172881433 172881670 -69782683 + MIR SINE MIR 8 248 -14 298 149 0 75 chr1 172881913 172881980 -69782373 + L1MC5 LINE L1 7178 7239 -722 2487 63 0 0 chr1 172882023 172882324 -69782029 + AluY SINE Alu 1 301 -10 851 111 111 7 chr1 172882333 172882486 -69781867 - L1PA12 LINE L1 -309 5854 5686 2251 108 0 18 chr1 172882486 172882829 -69781524 + L1PA12 LINE L1 5832 6168 0 434 244 133 11 chr1 172882839 172883019 -69781334 + L1MC5 LINE L1 7314 7515 -446 500 238 148 55 chr1 172883157 172883572 -69780781 + MLT1H LTR MaLR 46 545 -4 255 286 13 78 chr1 172883573 172883727 -69780626 + L1ME3 LINE L1 5972 6115 -47 258 105 0 0 chr1 172884187 172884225 -69780128 + (TC)n Simple_repeat Simple_repeat 1 38 0 249 108 0 0 chr1 172884225 172884262 -69780091 + (TG)n Simple_repeat Simple_repeat 2 38 0 2807 13 0 0 chr1 172884927 172885238 -69779115 + AluYb8 SINE Alu 1 311 -7 1359 241 100 34 chr1 172885727 172885800 -69778553 - MLT1J LTR MaLR 0 511 444 207 0 0 0 chr1 172885800 172885823 -69778530 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1359 241 100 34 chr1 172885823 172886221 -69778132 - MLT1J LTR MaLR -67 444 9 522 269 45 106 chr1 172886272 172886698 -69777655 - MLT1L LTR MaLR -116 499 49 875 137 0 43 chr1 172886698 172886837 -69777516 - FLAM_C SINE Alu 0 133 1 522 269 45 106 chr1 172886837 172886889 -69777464 - MLT1L LTR MaLR -566 49 53 2036 131 0 13 chr1 172886889 172887195 -69777158 + AluJb SINE Alu 1 302 -10 522 269 45 106 chr1 172887195 172887246 -69777107 - MLT1L LTR MaLR -561 54 1 1887 148 33 3 chr1 172888009 172888312 -69776041 + AluJb SINE Alu 1 312 0 2205 115 0 0 chr1 172888395 172888683 -69775670 + AluSc SINE Alu 1 288 -21 416 295 127 83 chr1 172890992 172891653 -69772700 - L1M2 LINE L1 -5598 1251 562 700 202 6 55 chr1 172891795 172891891 -69772462 + MER5A DNA MER1_type 13 97 -92 183 42 0 0 chr1 172891891 172891915 -69772438 + (CA)n Simple_repeat Simple_repeat 2 25 0 700 202 6 55 chr1 172891915 172892001 -69772352 + MER5A DNA MER1_type 97 186 -3 490 250 96 6 chr1 172892490 172892646 -69771707 + L2 LINE L2 2478 2647 -667 901 279 136 26 chr1 172892683 172893066 -69771287 + L2 LINE L2 2823 3247 -66 456 276 0 29 chr1 172893124 172893229 -69771124 + L2 LINE L2 3212 3313 0 5422 112 55 11 chr1 172893584 172894096 -69770257 + L1PA15 LINE L1 4486 4974 -1191 2304 91 3 0 chr1 172894096 172894392 -69769961 - AluSc SINE Alu -12 297 1 5422 112 55 11 chr1 172894392 172894924 -69769429 + L1PA15 LINE L1 4974 5481 -684 2698 26 0 0 chr1 172894924 172895227 -69769126 + AluY SINE Alu 5 307 -4 5422 112 55 11 chr1 172895227 172895731 -69768622 + L1PA15 LINE L1 5481 6035 -130 1897 174 0 10 chr1 172895731 172896041 -69768312 + AluJb SINE Alu 1 307 -5 5422 112 55 11 chr1 172896041 172896172 -69768181 + L1PA15 LINE L1 6035 6159 -6 480 310 62 13 chr1 172896205 172896426 -69767927 + MIR SINE MIR 16 248 -14 255 94 94 0 chr1 172896863 172896916 -69767437 - L1MB7 LINE L1 0 6184 6127 315 0 0 0 chr1 172896962 172896997 -69767356 + (TG)n Simple_repeat Simple_repeat 2 36 0 547 216 185 0 chr1 172897198 172897360 -69766993 - MIR SINE MIR -56 206 15 406 253 80 96 chr1 172897387 172897751 -69766602 - L1ME4a LINE L1 -2 6119 5762 382 272 87 60 chr1 172897735 172897821 -69766532 - L1ME4a LINE L1 -615 5555 5473 * 207 0 0 0 chr1 172897821 172897844 -69766509 + (TTA)n Simple_repeat Simple_repeat 1 23 0 382 272 87 60 chr1 172897844 172898081 -69766272 - L1ME4a LINE L1 -697 5473 5226 25 0 0 0 chr1 172898327 172898352 -69766001 + AT_rich Low_complexity Low_complexity 1 25 0 320 380 8 0 chr1 172898406 172898535 -69765818 + MIR SINE MIR 18 147 -115 2137 134 10 0 chr1 172899845 172900144 -69764209 - AluSx SINE Alu -10 302 1 606 193 67 13 chr1 172900210 172900360 -69763993 - MER97a DNA MER1_type? -715 179 22 273 226 49 49 chr1 172900930 172901032 -69763321 + MLT1K LTR MaLR 485 586 -2 252 289 29 48 chr1 172901823 172901927 -69762426 + L2 LINE L2 3171 3272 0 261 359 11 11 chr1 172902009 172902101 -69762252 - MIR3 SINE MIR -25 183 92 1468 325 108 30 chr1 172902122 172903321 -69761032 - L2 LINE L2 -6 3307 2016 223 328 65 48 chr1 172903472 172903658 -69760695 - L2 LINE L2 -1715 1599 1411 555 277 24 0 chr1 172903966 172904132 -69760221 + MLT1L LTR MaLR 444 613 -2 373 301 63 35 chr1 172904597 172904740 -69759613 + L2 LINE L2 3122 3268 -4 1633 184 34 6 chr1 172905469 172905796 -69758557 + MLT2C1 LTR ERVL 1 336 -61 32 26 0 0 chr1 172906011 172906050 -69758303 + AT_rich Low_complexity Low_complexity 1 39 0 325 101 22 34 chr1 172906075 172906164 -69758189 + (TTATA)n Simple_repeat Simple_repeat 1 88 0 237 182 0 0 chr1 172906205 172906249 -69758104 + MLT2C1 LTR ERVL 354 397 0 2180 95 0 54 chr1 172906307 172906622 -69757731 + AluSx SINE Alu 3 300 -12 1865 183 11 16 chr1 172907391 172907758 -69756595 + MLT1A1 LTR MaLR 1 365 0 371 342 137 22 chr1 172908050 172908451 -69755902 - L2 LINE L2 -800 2514 2068 1895 131 18 77 chr1 172908484 172908687 -69755666 - L1MB4 LINE L1 -2 6178 5965 1760 152 0 36 chr1 172908687 172908990 -69755363 - AluJb SINE Alu -20 292 1 1895 131 18 77 chr1 172908990 172909004 -69755349 - L1MB4 LINE L1 -215 5965 5952 1716 154 10 24 chr1 172909004 172909158 -69755195 - AluSx SINE Alu -23 289 139 233 0 62 0 chr1 172909158 172909190 -69755163 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1716 154 10 24 chr1 172909190 172909328 -69755025 - AluSx SINE Alu -173 139 1 1895 131 18 77 chr1 172909328 172909499 -69754854 - L1MB4 LINE L1 -228 5952 5812 1037 231 0 7 chr1 172910496 172910769 -69753584 - L1M4 LINE L1 -3349 3033 2763 * 1616 159 4 4 chr1 172910770 172911022 -69753331 - AluJb SINE Alu -14 298 47 8037 141 54 37 chr1 172911022 172912427 -69751926 - L1M4 LINE L1 -4756 1628 189 2103 112 3 3 chr1 172912427 172912731 -69751622 + AluSq SINE Alu 1 304 -9 8037 141 54 37 chr1 172912731 172912906 -69751447 - L1M4 LINE L1 -6195 189 18 361 280 62 67 chr1 172913782 172914007 -69750346 - MIR SINE MIR -21 241 18 2911 162 54 51 chr1 172914853 172915415 -69748938 + L1PA15 LINE L1 5453 6012 -153 1786 168 29 0 chr1 172915415 172915695 -69748658 + AluJb SINE Alu 1 288 -24 792 85 31 0 chr1 172915695 172915825 -69748528 + (GGAA)n Simple_repeat Simple_repeat 3 136 0 2911 162 54 51 chr1 172915825 172915952 -69748401 + L1PA15 LINE L1 6011 6144 -21 788 179 11 38 chr1 172916061 172916245 -69748108 - L1MA9 LINE L1 -4 6308 6130 334 321 155 11 chr1 172916397 172916584 -69747769 + MIR SINE MIR 21 234 -28 230 136 61 76 chr1 172916614 172916680 -69747673 + L1ME LINE L1 5812 5876 -245 6302 89 0 8 chr1 172916835 172917693 -69746660 - L1PA13 LINE L1 0 6163 5313 183 80 0 0 chr1 172918291 172918316 -69746037 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 43933 33 22 1 chr1 172918536 172924561 -69739792 + L1PA3 LINE L1 2 6155 0 300 272 12 12 chr1 172924898 172924979 -69739374 + MLT1J LTR MaLR 108 188 -323 409 214 20 20 chr1 172925082 172925180 -69739173 + MLT1J2 LTR MaLR 344 441 -9 357 273 120 1 chr1 172925350 172925484 -69738869 - MIR SINE MIR -67 141 4 202 303 45 45 chr1 172926739 172926828 -69737525 + L2 LINE L2 3177 3265 -48 1899 126 4 22 chr1 172927007 172927284 -69737069 - AluJb SINE Alu -29 283 12 253 270 34 34 chr1 172927473 172927562 -69736791 + MER34 LTR ERV1 449 537 -5 223 257 40 40 chr1 172927803 172927904 -69736449 + L2 LINE L2 1167 1267 -2047 651 260 173 26 chr1 172928287 172928599 -69735754 - L2 LINE L2 -10 3303 2946 2104 133 0 7 chr1 172928891 172929192 -69735161 - AluSx SINE Alu -13 299 1 1551 177 0 11 chr1 172929543 172929814 -69734539 - L1MB4 LINE L1 0 6180 5913 1999 117 17 3 chr1 172929817 172930108 -69734245 + AluSc SINE Alu 1 295 -14 526 145 60 0 chr1 172930119 172930202 -69734151 + AluJ/FLAM SINE Alu 3 90 -222 1824 147 18 49 chr1 172930202 172930750 -69733603 - L1MB4 LINE L1 -599 5581 5040 880 126 0 0 chr1 172930773 172930892 -69733461 - AluSq/x SINE Alu -193 119 1 1957 110 7 4 chr1 172931578 172931850 -69732503 - AluSx SINE Alu -39 273 1 26 30 0 0 chr1 172931921 172931954 -69732399 + AT_rich Low_complexity Low_complexity 1 33 0 838 134 17 0 chr1 172931954 172932073 -69732280 - 5S rRNA rRNA 0 121 1 214 348 86 38 chr1 172932080 172932477 -69731876 + L2 LINE L2 1989 2404 -910 228 336 87 19 chr1 172932706 172932810 -69731543 + LTR48 LTR ERV1 163 273 -514 283 194 71 82 chr1 172932998 172933096 -69731257 + LTR48 LTR ERV1 679 775 -12 2301 95 3 0 chr1 172933247 172933542 -69730811 + AluSx SINE Alu 1 296 -16 208 235 88 15 chr1 172933625 172933693 -69730660 + L2 LINE L2 2428 2500 -814 1490 162 8 27 chr1 172933771 172934030 -69730323 - THE1B LTR MaLR -110 254 1 2441 239 60 47 chr1 172934255 172934959 -69729394 + MER72 LTR ERV1 1 713 -9 1350 215 55 156 chr1 172935045 172935304 -69729049 + L2 LINE L2 1444 1728 -1586 2287 118 0 0 chr1 172935304 172935609 -69728744 + AluSx SINE Alu 1 305 -7 1350 215 55 156 chr1 172935609 172935652 -69728701 + L2 LINE L2 1728 1774 -1540 234 163 0 0 chr1 172935652 172935701 -69728652 + Alu SINE Alu 118 166 0 2375 111 0 0 chr1 172935706 172936013 -69728340 + AluSx SINE Alu 1 307 -5 1350 215 55 156 chr1 172936013 172936435 -69727918 + L2 LINE L2 1778 2144 -1170 540 243 0 40 chr1 172936542 172936690 -69727663 + L2 LINE L2 3172 3313 0 482 280 176 28 chr1 172936900 172937189 -69727164 - MER102b DNA MER1_type -6 335 4 1679 224 16 5 chr1 172937940 172938364 -69725989 + L1M4 LINE L1 4777 5205 -941 10008 148 89 18 chr1 172938368 172939148 -69725205 + L1MC1 LINE L1 27 750 -5676 901 173 0 0 chr1 172939148 172939281 -69725072 + FLAM_A SINE Alu 1 133 0 10008 148 89 18 chr1 172939281 172939304 -69725049 + L1MC1 LINE L1 750 770 -5656 1921 198 82 0 chr1 172939304 172939668 -69724685 - MSTD LTR MaLR -2 394 1 10008 148 89 18 chr1 172939668 172940803 -69723550 + L1MC1 LINE L1 770 2105 -4321 359 250 18 0 chr1 172940792 172940904 -69723449 - L1MCa LINE L1 -3973 2634 2521 * 289 102 0 0 chr1 172940904 172940953 -69723400 - AluSc SINE Alu 0 299 251 1194 138 26 9 chr1 172940954 172941189 -69723164 - L1MCa LINE L1 -3935 2491 2253 1223 129 0 0 chr1 172941189 172941359 -69722994 - AluSg/x SINE Alu -9 301 132 2149 106 0 10 chr1 172941359 172941662 -69722691 - AluY SINE Alu -11 300 1 2138 102 42 0 chr1 172941673 172941957 -69722396 - AluSc SINE Alu -13 296 1 823 101 8 0 chr1 172941957 172942076 -69722277 - L1MCa LINE L1 -4185 2241 2122 1721 189 43 43 chr1 172942078 172942278 -69722075 + L1MC1 LINE L1 2861 3060 -3366 2405 63 0 60 chr1 172942278 172942596 -69721757 - AluY SINE Alu -12 299 1 1721 189 43 43 chr1 172942596 172942860 -69721493 + L1MC1 LINE L1 3059 3325 -3101 688 160 10 0 chr1 172942862 172942962 -69721391 + FLAM_C SINE Alu 3 103 -40 232 135 27 0 chr1 172942962 172942999 -69721354 - THE1B LTR MaLR 0 364 327 971 103 52 0 chr1 172942999 172943135 -69721218 - AluSq/x SINE Alu -165 147 5 2192 110 98 8 chr1 172943139 172943495 -69720858 - MSTA LTR MaLR -40 388 1 9611 180 29 3 chr1 172943495 172943798 -69720555 - MSTA-int LTR MaLR 0 1651 1357 2119 143 0 3 chr1 172943798 172944099 -69720254 - AluSx SINE Alu -12 300 1 9611 180 29 3 chr1 172944099 172945405 -69718948 - MSTA-int LTR MaLR -294 1357 1 2605 112 120 5 chr1 172945405 172945789 -69718564 - MSTA LTR MaLR 0 428 1 25 51 0 0 chr1 172945810 172945849 -69718504 + AT_rich Low_complexity Low_complexity 1 39 0 1405 190 3 6 chr1 172945854 172946175 -69718178 + L1MC1 LINE L1 3308 3627 -2799 * 5922 163 42 19 chr1 172946154 172946807 -69717546 + L1MC1 LINE L1 5079 5716 -897 2150 135 0 0 chr1 172946807 172947110 -69717243 + AluSx SINE Alu 1 303 -9 5922 163 42 19 chr1 172947110 172947951 -69716402 + L1MC1 LINE L1 5716 6613 0 3709 207 53 17 chr1 172947948 172948413 -69715940 + L1ME2 LINE L1 5197 5644 -520 * 1560 203 0 55 chr1 172948413 172948724 -69715629 + AluJb SINE Alu 2 295 -7 3709 207 53 17 chr1 172948724 172949192 -69715161 + L1ME2 LINE L1 5644 6151 -13 1574 192 7 7 chr1 172949599 172949906 -69714447 - AluJb SINE Alu -5 307 1 412 173 93 0 chr1 172950092 172950167 -69714186 - AluJ/FLAM SINE Alu -229 83 2 344 326 98 14 chr1 172951304 172951330 -69713023 + MIR SINE MIR 2 24 -238 2219 132 0 0 chr1 172951330 172951634 -69712719 + AluSx SINE Alu 1 304 -8 344 326 98 14 chr1 172951634 172951822 -69712531 + MIR SINE MIR 24 234 -28 889 251 46 46 chr1 172952308 172952634 -69711719 - L2 LINE L2 -952 2362 2037 264 283 60 24 chr1 172954044 172954210 -69710143 - L1MC4a LINE L1 -1875 5933 5762 293 343 3 5 chr1 172954216 172954368 -69709985 - L1MC4a LINE L1 -378 5743 5591 828 154 8 0 chr1 172954371 172954494 -69709859 + FLAM_C SINE Alu 1 124 -19 255 264 14 14 chr1 172954541 172954613 -69709740 - L1MC4a LINE L1 -2211 5597 5526 2265 92 10 0 chr1 172954670 172954963 -69709390 + AluSx SINE Alu 1 296 -16 279 0 0 0 chr1 172955114 172955145 -69709208 + (TG)n Simple_repeat Simple_repeat 2 32 0 2303 121 0 0 chr1 172957886 172958199 -69706154 + AluSq SINE Alu 1 313 0 349 326 72 31 chr1 172958350 172958596 -69705757 + MIR SINE MIR 3 255 -7 423 266 88 0 chr1 172958856 172958969 -69705384 - L2 LINE L2 -1 3312 3190 300 262 0 0 chr1 172958983 172959044 -69705309 + L2 LINE L2 3203 3263 -9 2315 110 0 0 chr1 172959100 172959409 -69704944 - AluSx SINE Alu -3 309 1 683 281 90 75 chr1 172959944 172960346 -69704007 + MLT1I LTR MaLR 2 409 0 2047 131 6 13 chr1 172960813 172961127 -69703226 - AluSx SINE Alu 0 312 1 344 353 86 21 chr1 172961465 172961652 -69702701 - MIR3 SINE MIR -7 201 3 23 78 0 0 chr1 172962298 172962349 -69702004 + GC_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr1 172962793 172962817 -69701536 + GC_rich Low_complexity Low_complexity 1 24 0 1796 108 37 0 chr1 172965989 172966230 -69698123 + AluSg SINE Alu 39 288 -22 227 287 23 0 chr1 172966595 172966682 -69697671 - LTR33A LTR ERVL -10 513 425 504 256 86 62 chr1 172966726 172967095 -69697258 - LTR50 LTR ERVL -322 473 5 307 280 153 8 chr1 172967155 172967273 -69697080 - L2 LINE L2 -9 3304 3170 200 296 99 52 chr1 172968326 172968520 -69695833 + MIR SINE MIR 29 237 -25 386 218 26 0 chr1 172968812 172968968 -69695385 + (TA)n Simple_repeat Simple_repeat 1 160 0 290 294 20 0 chr1 172968968 172969070 -69695283 - L1ME3 LINE L1 -70 6092 5989 2236 155 66 0 chr1 172969269 172969694 -69694659 + L1MB5 LINE L1 5689 6141 -33 704 258 61 18 chr1 172969917 172970146 -69694207 - MIR SINE MIR -21 241 3 262 185 123 49 chr1 172970146 172970215 -69694138 - MIR SINE MIR -48 214 140 1643 142 21 78 chr1 172970327 172970658 -69693695 - AluJo SINE Alu 0 312 1 249 358 111 0 chr1 172970700 172970781 -69693572 + L2 LINE L2 3168 3257 -15 282 356 23 9 chr1 172970955 172971174 -69693179 - L1ME3 LINE L1 -2021 5787 5566 246 302 104 0 chr1 172971284 172971390 -69692963 - MIR SINE MIR -115 147 31 1677 151 13 29 chr1 172971691 172972002 -69692351 - AluJb SINE Alu -3 309 4 1032 139 0 87 chr1 172972147 172972355 -69691998 - MER46A DNA MER2_type 0 236 47 1780 140 22 32 chr1 172972411 172972726 -69691627 - AluSx SINE Alu 0 312 1 1936 148 0 37 chr1 172973352 172973676 -69690677 - AluJo SINE Alu 0 312 1 27 0 0 0 chr1 172973839 172973866 -69690487 + AT_rich Low_complexity Low_complexity 1 27 0 1711 159 40 11 chr1 172974032 172974332 -69690021 + AluJo SINE Alu 1 308 0 998 192 39 83 chr1 172974736 172974858 -69689495 - MER2 DNA MER2_type 0 344 218 1621 175 36 4 chr1 172974858 172975132 -69689221 + AluJb SINE Alu 1 283 -29 998 192 39 83 chr1 172975132 172975369 -69688984 - MER2 DNA MER2_type -126 218 1 201 311 122 0 chr1 172975833 172975907 -69688446 - MIR3 SINE MIR -39 169 87 284 247 86 12 chr1 172976660 172976741 -69687612 + MIR SINE MIR 16 102 -160 1610 192 6 43 chr1 172977842 172978122 -69686231 + AluJo SINE Alu 1 269 -43 1982 51 0 0 chr1 172978122 172978356 -69685997 - AluY SINE Alu -1 310 77 1610 192 6 43 chr1 172978356 172978398 -69685955 + AluJo SINE Alu 269 311 -1 214 364 23 15 chr1 172978839 172978971 -69685382 - MIR3 SINE MIR -12 196 64 223 250 31 0 chr1 172979341 172979405 -69684948 + (TA)n Simple_repeat Simple_repeat 2 67 0 413 260 221 22 chr1 172979839 172980070 -69684283 + L1MC/D LINE L1 5373 5649 -2159 348 251 73 89 chr1 172980248 172980427 -69683926 - MER5B DNA MER1_type -1 177 2 2133 197 15 59 chr1 172980571 172981099 -69683254 - MLT1D LTR MaLR 0 505 1 496 171 0 0 chr1 172981420 172981496 -69682857 + Tigger5 DNA MER2_type 2 77 -2246 372 203 25 0 chr1 172981497 172981576 -69682777 - Tigger5 DNA MER2_type -3 2320 2240 415 160 13 0 chr1 172981603 172981678 -69682675 + Tigger5 DNA MER2_type 2247 2322 -1 1484 169 52 58 chr1 172981686 172982017 -69682336 - L1 LINE L1 -1593 4553 4224 5082 94 71 26 chr1 172982017 172982808 -69681545 + LTR12 LTR ERV1 1 826 0 1484 169 52 58 chr1 172982808 172982938 -69681415 - L1 LINE L1 -1922 4224 4095 191 359 76 0 chr1 172983563 172983655 -69680698 + L2 LINE L2 3173 3271 -1 2339 90 0 3 chr1 172984714 172985014 -69679339 - AluSc SINE Alu -10 299 1 902 107 0 0 chr1 172985014 172985135 -69679218 - AluSg/x SINE Alu -17 293 173 1713 208 85 37 chr1 172985284 172985766 -69678587 + MLT1D LTR MaLR 1 505 0 1954 156 3 16 chr1 172986177 172986485 -69677868 + AluJb SINE Alu 1 304 -8 398 331 99 6 chr1 172987188 172987360 -69676993 - MIR SINE MIR -44 218 31 2385 65 7 3 chr1 172987634 172987942 -69676411 - AluY SINE Alu -2 309 1 758 218 117 17 chr1 172988088 172988327 -69676026 - LTR34 LTR ERV1 -180 519 257 445 214 17 17 chr1 172988451 172988568 -69675785 - MER4A LTR ERV1 -547 117 1 377 250 0 0 chr1 172989348 172989424 -69674929 - L2 LINE L2 -9 3263 3188 346 327 0 60 chr1 172989527 172989677 -69674676 - L2 LINE L2 -311 3002 2862 2161 108 0 0 chr1 172989678 172989964 -69674389 + AluY SINE Alu 15 300 -11 354 287 72 6 chr1 172990124 172990291 -69674062 - L1MC/D LINE L1 -1994 5814 5637 29 0 0 0 chr1 172990291 172990320 -69674033 + AT_rich Low_complexity Low_complexity 1 29 0 1819 252 77 57 chr1 172990786 172991484 -69672869 - MER21B LTR ERV1 -54 809 98 358 200 14 0 chr1 172991538 172991608 -69672745 - MER21B LTR ERV1 -773 90 20 1789 126 15 60 chr1 172991643 172991976 -69672377 - MER2 DNA MER2_type -26 319 2 2084 106 7 0 chr1 172992006 172992290 -69672063 - AluSx SINE Alu -17 295 10 1880 124 138 11 chr1 172992490 172992860 -69671493 - MSTA LTR MaLR -11 417 1 2362 88 13 0 chr1 172993284 172993591 -69670762 - AluY SINE Alu 0 311 1 433 235 204 41 chr1 172993731 172993952 -69670401 - L1MC/D LINE L1 -1314 4832 4576 490 307 73 7 chr1 172993975 172994275 -69670078 - L1MC/D LINE L1 -1647 4499 4180 232 173 0 39 chr1 172994280 172994332 -69670021 + C-rich Low_complexity Low_complexity 6 55 0 458 291 99 47 chr1 172994530 172994952 -69669401 - L1MC/D LINE L1 -2770 3376 2933 2051 125 0 4 chr1 172994969 172995250 -69669103 + AluSx SINE Alu 1 280 -32 961 46 0 0 chr1 172995659 172995768 -69668585 + AluSq/x SINE Alu 27 135 -178 1874 67 5 0 chr1 172995769 172995993 -69668360 + AluSx SINE Alu 2 226 -86 1103 121 47 70 chr1 172996281 172996661 -69667692 + LTR54 LTR ERV1 1 468 -42 2303 66 11 3 chr1 172996661 172996948 -69667405 + AluSq SINE Alu 9 297 -16 1103 121 47 70 chr1 172996948 172996991 -69667362 + LTR54 LTR ERV1 468 510 0 273 176 88 22 chr1 172997343 172997434 -69666919 - LTR65 LTR ERV1 -105 564 468 8666 101 16 28 chr1 172998074 172998401 -69665952 - HSMAR1 DNA Mariner 0 1287 958 2164 96 3 54 chr1 172998401 172998715 -69665638 - AluSq SINE Alu -15 298 1 8666 101 16 28 chr1 172998715 172999351 -69665002 - HSMAR1 DNA Mariner -329 958 340 2286 97 3 19 chr1 172999351 172999660 -69664693 - AluSx SINE Alu -8 304 1 8666 101 16 28 chr1 172999660 172999997 -69664356 - HSMAR1 DNA Mariner -947 340 1 533 100 0 0 chr1 173000537 173000607 -69663746 - FRAM/FAM SINE Alu -87 89 20 1341 155 125 15 chr1 173000648 173000912 -69663441 - AluSg SINE Alu -17 293 1 22 0 0 0 chr1 173000943 173000965 -69663388 + AT_rich Low_complexity Low_complexity 1 22 0 1263 198 0 9 chr1 173000971 173001193 -69663160 - AluJo SINE Alu -36 276 57 2389 74 40 0 chr1 173002142 173002441 -69661912 - AluY SINE Alu 0 311 1 2340 79 7 0 chr1 173002665 173002957 -69661396 - AluSx SINE Alu -18 294 1 668 293 153 28 chr1 173003485 173003837 -69660516 + L3 LINE CR1 1141 1536 -41 1767 176 55 3 chr1 173004162 173004509 -69659844 - MLT1A1 LTR MaLR 0 365 1 321 312 83 0 chr1 173004790 173004899 -69659454 - L2 LINE L2 0 3272 3155 790 312 117 35 chr1 173005008 173005366 -69658987 - L2 LINE L2 -906 2408 2002 1668 81 5 0 chr1 173005366 173005575 -69658778 + AluSp SINE Alu 87 296 -17 790 312 117 35 chr1 173005575 173005677 -69658676 - L2 LINE L2 -1312 2002 1910 365 203 13 13 chr1 173005677 173005756 -69658597 - MER2 DNA MER2_type 0 345 267 231 73 24 0 chr1 173005844 173005885 -69658468 - MER2 DNA MER2_type -172 173 132 244 49 24 0 chr1 173005963 173006004 -69658349 - MER2 DNA MER2_type -172 173 132 1784 155 25 31 chr1 173006013 173006330 -69658023 - MER1B DNA MER1_type -24 315 1 823 176 0 7 chr1 173006330 173006470 -69657883 - MER2 DNA MER2_type -206 139 1 195 246 0 77 chr1 173006477 173006542 -69657811 - L2 LINE L2 -1414 1900 1841 258 321 60 30 chr1 173006612 173006746 -69657607 - L2 LINE L2 -1487 1827 1690 1393 102 0 5 chr1 173006753 173006936 -69657417 + AluSx SINE Alu 1 184 -128 2290 104 0 0 chr1 173006936 173007225 -69657128 - AluSg SINE Alu -21 289 1 1393 102 0 5 chr1 173007225 173007237 -69657116 + AluSx SINE Alu 184 195 -117 325 272 40 56 chr1 173007272 173007397 -69656956 - L2 LINE L2 -2126 1188 1066 197 339 142 31 chr1 173008169 173008296 -69656057 - MIR3 SINE MIR -38 170 30 355 269 28 14 chr1 173008407 173008552 -69655801 + L1MC5 LINE L1 7784 7930 -31 2099 111 3 44 chr1 173008819 173009134 -69655219 - AluSq SINE Alu -11 302 1 2220 118 0 0 chr1 173009184 173009480 -69654873 - AluSg SINE Alu -14 296 1 26 50 0 0 chr1 173009690 173009730 -69654623 + AT_rich Low_complexity Low_complexity 1 40 0 2959 276 122 18 chr1 173010447 173011137 -69653216 + L2 LINE L2 1695 2533 -781 2174 117 3 7 chr1 173011137 173011446 -69652907 - AluSg SINE Alu -2 308 1 2959 276 122 18 chr1 173011446 173011808 -69652545 + L2 LINE L2 2533 2856 -458 357 266 139 19 chr1 173011893 173012051 -69652302 + MER5B DNA MER1_type 2 178 0 207 309 204 12 chr1 173012170 173012332 -69652021 - L3 LINE CR1 -16 1561 1369 * 739 280 201 25 chr1 173012323 173012687 -69651666 + L2 LINE L2 2886 3313 0 261 336 84 14 chr1 173012899 173013042 -69651311 - L3 LINE CR1 -451 1126 974 1093 149 16 112 chr1 173013242 173013564 -69650789 - L1MB3 LINE L1 0 6183 5893 487 133 88 18 chr1 173013637 173013750 -69650603 - L1MB3 LINE L1 -264 5907 5787 190 326 11 22 chr1 173013760 173013852 -69650501 - L3 LINE CR1 -820 757 667 458 260 72 88 chr1 173014045 173014226 -69650127 + MIR SINE MIR 51 228 -34 1541 167 21 24 chr1 173014552 173014840 -69649513 - AluJo SINE Alu -25 287 1 205 361 111 0 chr1 173015612 173015720 -69648633 + L2 LINE L2 3147 3266 -6 2411 68 0 0 chr1 173015763 173016055 -69648298 - AluSc SINE Alu -17 292 1 2320 91 14 3 chr1 173016057 173016353 -69648000 - AluSx SINE Alu -13 299 1 198 0 0 0 chr1 173018838 173018860 -69645493 + (T)n Simple_repeat Simple_repeat 1 22 0 3341 182 108 32 chr1 173019422 173020754 -69643599 - L1MB4 LINE L1 -2 6178 4734 2102 238 132 9 chr1 173020933 173021592 -69642761 + L1M4 LINE L1 298 1037 -5505 2512 188 89 29 chr1 173021597 173022267 -69642086 + Tigger7 DNA MER2_type 7 2586 -1 1816 232 181 13 chr1 173022268 173023179 -69641174 + L1M4 LINE L1 1044 2103 -4543 329 187 121 88 chr1 173023182 173023273 -69641080 - MLT1A2 LTR MaLR 0 467 280 1876 162 194 20 chr1 173023274 173023921 -69640432 + L1MDa LINE L1 1830 2616 -3924 2379 77 0 3 chr1 173023923 173024221 -69640132 + AluY SINE Alu 1 297 -14 2392 235 97 28 chr1 173024264 173024736 -69639617 + L1M4 LINE L1 3956 4394 -2250 1756 153 37 14 chr1 173024736 173025031 -69639322 + AluJb SINE Alu 1 302 -10 2392 235 97 28 chr1 173025031 173025410 -69638943 + L1M4 LINE L1 4394 4866 -1778 23 0 0 0 chr1 173025422 173025445 -69638908 + AT_rich Low_complexity Low_complexity 1 23 0 642 203 89 30 chr1 173025478 173025715 -69638638 + L1M4 LINE L1 3797 4047 -2099 1670 191 89 45 chr1 173025730 173025956 -69638397 - MLT1C LTR MaLR -4 463 248 2165 135 0 3 chr1 173025956 173026260 -69638093 - AluSx SINE Alu -7 305 3 1670 191 89 45 chr1 173026260 173026473 -69637880 - MLT1C LTR MaLR -219 248 5 1902 211 24 95 chr1 173026477 173027023 -69637330 - MLT1C-int LTR MaLR 0 1371 865 3329 148 21 126 chr1 173027094 173027659 -69636694 - MLT1C-int LTR MaLR -484 887 264 2188 106 3 3 chr1 173027659 173027960 -69636393 - AluSx SINE Alu -7 305 5 3329 148 21 126 chr1 173027960 173027987 -69636366 - MLT1C-int LTR MaLR -1107 264 236 819 192 23 47 chr1 173027987 173028159 -69636194 - FAM SINE Alu -4 171 4 3329 148 21 126 chr1 173028159 173028424 -69635929 - MLT1C-int LTR MaLR -1135 236 119 1244 186 13 9 chr1 173028425 173028651 -69635702 + AluJo SINE Alu 73 299 -13 2187 122 30 10 chr1 173028687 173029263 -69635090 + L1MA9 LINE L1 5003 5587 -725 699 237 53 0 chr1 173029263 173029432 -69634921 + AluJo SINE Alu 113 290 -22 2197 133 28 68 chr1 173029432 173029861 -69634492 + L1MA9 LINE L1 5614 6025 -287 506 188 10 10 chr1 173029924 173030020 -69634333 + MLT1A2 LTR MaLR 1 96 -278 399 40 67 53 chr1 173030020 173030095 -69634258 + L1MA4 LINE L1 6219 6294 -6 1946 163 0 10 chr1 173030157 173030464 -69633889 + AluJb SINE Alu 1 304 -8 296 272 95 34 chr1 173030502 173030606 -69633747 + HAL1 LINE L1 1209 1326 -1181 2335 97 0 0 chr1 173030606 173030915 -69633438 - AluY SINE Alu -2 309 1 296 272 95 34 chr1 173030915 173030957 -69633396 + HAL1 LINE L1 1326 1364 -1143 2317 100 3 0 chr1 173031142 173031443 -69632910 - AluSx SINE Alu -10 302 1 1972 137 3 3 chr1 173031525 173031818 -69632535 - AluSx SINE Alu -19 293 1 21 0 0 0 chr1 173031821 173031842 -69632511 + AT_rich Low_complexity Low_complexity 1 21 0 4759 144 51 28 chr1 173032108 173032954 -69631399 + MER6 DNA MER2_type 1 865 0 396 299 161 18 chr1 173033391 173033608 -69630745 + MIR SINE MIR 13 260 -2 506 325 55 24 chr1 173034228 173034643 -69629710 + ERVL LTR ERVL 1248 1675 -4089 856 292 101 12 chr1 173034750 173035096 -69629257 + ERVL LTR ERVL 1845 2221 -3543 32 43 0 0 chr1 173037317 173037363 -69626990 + AT_rich Low_complexity Low_complexity 1 46 0 200 395 67 17 chr1 173037882 173038001 -69626352 + L2 LINE L2 3127 3251 -21 741 140 0 98 chr1 173038318 173038461 -69625892 + FLAM_A SINE Alu 1 129 -4 24 53 0 0 chr1 173038485 173038523 -69625830 + AT_rich Low_complexity Low_complexity 1 38 0 2707 156 32 2 chr1 173038794 173039289 -69625064 - L1PA16 LINE L1 -9 6157 5648 194 264 99 55 chr1 173039333 173039424 -69624929 - MIR3 SINE MIR -3 205 111 507 228 70 0 chr1 173039435 173039549 -69624804 - FLAM_A SINE Alu -8 125 4 2134 133 7 0 chr1 173039688 173039989 -69624364 - AluSx SINE Alu -8 304 2 30 83 0 0 chr1 173040526 173040598 -69623755 + AT_rich Low_complexity Low_complexity 1 72 0 218 194 0 0 chr1 173040826 173040862 -69623491 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1563 176 30 27 chr1 173041424 173041720 -69622633 + AluJb SINE Alu 5 301 -11 235 227 0 0 chr1 173042293 173042337 -69622016 - Alu SINE Alu -11 290 247 824 153 0 22 chr1 173042337 173042474 -69621879 - AluJb SINE Alu -178 134 1 332 212 83 0 chr1 173042579 173042711 -69621642 + L1MB3 LINE L1 6040 6182 -1 296 277 50 99 chr1 173043029 173043110 -69621243 + MIR SINE MIR 9 82 -180 728 192 0 0 chr1 173043110 173043235 -69621118 - FLAM_A SINE Alu -8 125 1 296 277 50 99 chr1 173043235 173043294 -69621059 + MIR SINE MIR 82 142 -120 1048 154 0 0 chr1 173043305 173043467 -69620886 - AluY SINE Alu -17 294 133 1891 133 26 0 chr1 173043754 173044025 -69620328 + AluSg SINE Alu 26 303 -7 469 298 15 0 chr1 173044032 173044163 -69620190 + MIR3 SINE MIR 33 165 -43 2327 103 0 6 chr1 173044480 173044792 -69619561 + AluSp SINE Alu 1 310 -3 2273 111 0 0 chr1 173044837 173045144 -69619209 + AluSq SINE Alu 1 307 -6 233 278 0 0 chr1 173045835 173045887 -69618466 - L2 LINE L2 -11 3302 3210 235 216 0 0 chr1 173045889 173045940 -69618413 + L1MC4 LINE L1 6652 6702 -1340 296 255 31 31 chr1 173045962 173046060 -69618293 - MIR SINE MIR -58 204 107 478 216 17 9 chr1 173046186 173046302 -69618051 - L1ME2 LINE L1 -9 6155 6039 1919 254 142 110 chr1 173047286 173047999 -69616354 + HAL1 LINE L1 1 690 -1817 2293 67 7 0 chr1 173047999 173048282 -69616071 - AluY SINE Alu -4 307 23 1919 254 142 110 chr1 173048282 173048864 -69615489 + HAL1 LINE L1 690 1252 -1255 2140 139 0 0 chr1 173048864 173049173 -69615180 + AluSx SINE Alu 1 309 -3 1919 254 142 110 chr1 173049173 173049241 -69615112 + HAL1 LINE L1 1252 1316 -1191 2166 131 0 3 chr1 173049241 173049554 -69614799 + AluSx SINE Alu 1 312 0 1919 254 142 110 chr1 173049554 173050236 -69614117 + HAL1 LINE L1 1316 2113 -394 821 154 23 0 chr1 173050236 173050366 -69613987 - FLAM_C SINE Alu -8 135 3 604 219 66 66 chr1 173050388 173050584 -69613769 + MLT1F LTR MaLR 5 200 -342 1069 129 0 13 chr1 173050602 173050757 -69613596 - FRAM SINE Alu -13 163 11 768 213 25 19 chr1 173050757 173050917 -69613436 + MLT1E LTR MaLR 431 591 -2 375 236 311 33 chr1 173050922 173051186 -69613167 + HAL1 LINE L1 2114 2303 -204 2176 88 16 29 chr1 173051186 173051492 -69612861 - AluSx SINE Alu -10 302 1 375 236 311 33 chr1 173051492 173051532 -69612821 + HAL1 LINE L1 2303 2503 -4 313 300 100 25 chr1 173051914 173052074 -69612279 + HAL1b LINE L1 740 911 -437 2217 116 3 3 chr1 173052139 173052450 -69611903 + AluSx SINE Alu 1 311 -1 510 253 125 21 chr1 173052712 173053133 -69611220 + L1MC4a LINE L1 3594 4060 -2086 1887 147 7 13 chr1 173053133 173053439 -69610914 + AluSx SINE Alu 1 304 -8 510 253 125 21 chr1 173053439 173053505 -69610848 + L1MC4a LINE L1 4060 4118 -2028 248 333 9 0 chr1 173053719 173053824 -69610529 + L1MC4a LINE L1 4742 4847 -1299 338 232 189 32 chr1 173054140 173054235 -69610118 + L2 LINE L2 3159 3268 -4 23 0 0 0 chr1 173054273 173054296 -69610057 + AT_rich Low_complexity Low_complexity 1 23 0 273 339 26 17 chr1 173055147 173055262 -69609091 - L2 LINE L2 -1 3312 3197 1240 147 15 20 chr1 173055801 173056005 -69608348 - AluSg/x SINE Alu -21 289 87 1657 158 43 13 chr1 173057702 173058005 -69606348 + AluJb SINE Alu 1 312 0 234 350 96 23 chr1 173058525 173058702 -69605651 - L3b LINE CR1 -286 1297 1108 723 242 10 111 chr1 173058746 173059044 -69605309 + L2 LINE L2 3046 3313 0 220 362 0 21 chr1 173059538 173059632 -69604721 + L2 LINE L2 3180 3271 -1 206 349 24 0 chr1 173059817 173059900 -69604453 - L2 LINE L2 0 3272 3188 223 301 82 0 chr1 173059950 173060023 -69604330 + L2 LINE L2 3189 3267 -5 27 29 0 0 chr1 173060656 173060690 -69603663 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr1 173060958 173060980 -69603373 + AT_rich Low_complexity Low_complexity 1 22 0 403 279 52 49 chr1 173060997 173061305 -69603048 + L1MC4a LINE L1 4878 5186 -960 852 314 62 16 chr1 173061582 173062142 -69602211 + L1MC4a LINE L1 5318 5903 -1905 224 289 0 0 chr1 173062344 173062420 -69601933 + (TA)n Simple_repeat Simple_repeat 2 77 0 336 226 98 29 chr1 173062582 173062684 -69601669 + MIR3 SINE MIR 82 190 -18 560 340 87 5 chr1 173063766 173063972 -69600381 - MIR SINE MIR -11 251 29 885 181 102 0 chr1 173064236 173064413 -69599940 - MER58A DNA MER1_type 0 224 30 404 314 57 0 chr1 173064554 173064694 -69599659 + L2 LINE L2 3165 3312 -1 875 175 16 10 chr1 173064736 173065046 -69599307 + GA-rich Low_complexity Low_complexity 1 311 0 1020 172 12 0 chr1 173065516 173065685 -69598668 - FAM SINE Alu -4 171 1 1198 120 10 10 chr1 173066040 173066240 -69598113 - L1PA13 LINE L1 0 6163 5964 499 264 163 6 chr1 173066784 173066962 -69597391 - L3 LINE CR1 -257 1320 1115 408 297 70 24 chr1 173066970 173067187 -69597166 + MIR SINE MIR 14 236 -26 274 200 109 0 chr1 173067428 173067483 -69596870 + L2 LINE L2 3237 3297 -16 2355 167 74 75 chr1 173067880 173068405 -69595948 + L1PA16 LINE L1 5225 6148 -18 2396 120 46 10 chr1 173068405 173068818 -69595535 + L1PA16 LINE L1 5731 6162 -4 2355 167 74 75 chr1 173068818 173068833 -69595520 + L1PA16 LINE L1 6148 6162 -4 214 381 82 14 chr1 173069249 173069396 -69594957 - L2 LINE L2 -1 3271 3115 236 272 74 62 chr1 173069488 173069569 -69594784 - L2 LINE L2 -198 3074 2993 204 67 0 0 chr1 173070345 173070375 -69593978 + (TC)n Simple_repeat Simple_repeat 2 31 0 267 93 0 0 chr1 173070375 173070418 -69593935 + (CA)n Simple_repeat Simple_repeat 1 43 0 210 225 113 42 chr1 173070996 173071067 -69593286 + L2 LINE L2 3213 3288 -25 620 223 149 34 chr1 173072016 173072189 -69592164 + MIR SINE MIR 6 198 -64 507 162 0 61 chr1 173072189 173072288 -69592065 + MER5A DNA MER1_type 1 93 -96 2207 109 3 0 chr1 173072752 173073046 -69591307 - AluSx SINE Alu -17 295 1 335 246 56 71 chr1 173073222 173073371 -69590982 - MER5A DNA MER1_type -36 153 1 1996 165 125 42 chr1 173074080 173074269 -69590084 + MLT1C LTR MaLR 1 173 -294 2352 123 0 0 chr1 173074269 173074578 -69589775 + AluSq SINE Alu 1 309 -4 1996 165 125 42 chr1 173074578 173074819 -69589534 + MLT1C LTR MaLR 173 467 0 1076 274 103 50 chr1 173075021 173075628 -69588725 + L1MEd LINE L1 420 993 -5317 2172 123 0 10 chr1 173075628 173075930 -69588423 + AluSq SINE Alu 1 299 -14 1076 274 103 50 chr1 173075930 173076490 -69587863 + L1MEd LINE L1 993 1668 -4642 1788 226 18 62 chr1 173076531 173077098 -69587255 + MER34 LTR ERV1 1 542 0 469 308 39 81 chr1 173077126 173077558 -69586795 + L1MEd LINE L1 1780 2193 -4117 230 300 36 0 chr1 173077660 173077770 -69586583 + L1MEd LINE L1 2337 2450 -3679 276 250 0 0 chr1 173077771 173077851 -69586502 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr1 173077986 173078008 -69586345 + AT_rich Low_complexity Low_complexity 1 22 0 1245 274 91 39 chr1 173078012 173078426 -69585927 + L1MEd LINE L1 2576 2967 -3162 1983 232 131 6 chr1 173078426 173078930 -69585423 - MLT1F1 LTR MaLR 0 567 1 1245 274 91 39 chr1 173078930 173079096 -69585257 + L1MEd LINE L1 2967 3123 -3006 2364 106 3 0 chr1 173079096 173079399 -69584954 + AluSp SINE Alu 1 304 -9 1245 274 91 39 chr1 173079399 173079620 -69584733 + L1MEd LINE L1 3123 3331 -2798 1889 132 45 10 chr1 173079620 173079908 -69584445 + AluSx SINE Alu 1 298 -14 1245 274 91 39 chr1 173079908 173080215 -69584138 + L1MEd LINE L1 3331 3744 -2385 587 269 50 8 chr1 173080253 173080495 -69583858 + L1ME3A LINE L1 5696 5947 -223 214 267 267 19 chr1 173082016 173082121 -69582232 + MIR3 SINE MIR 66 196 -12 566 355 99 0 chr1 173083445 173083817 -69580536 + L2 LINE L2 2569 2977 -337 234 0 0 0 chr1 173084306 173084332 -69580021 + (CA)n Simple_repeat Simple_repeat 1 26 0 4132 67 28 0 chr1 173084692 173085230 -69579123 - MER41A LTR ERV1 -1 553 1 351 326 108 19 chr1 173086391 173086649 -69577704 + L2 LINE L2 3011 3291 -22 687 269 6 11 chr1 173086850 173087032 -69577321 + MER5A DNA MER1_type 9 189 0 2285 110 0 10 chr1 173087420 173087729 -69576624 - AluSg SINE Alu -4 306 1 2021 126 39 0 chr1 173088256 173088542 -69575811 - AluSx SINE Alu -15 297 1 979 120 0 0 chr1 173088546 173088679 -69575674 - FLAM_C SINE Alu -10 133 1 344 322 80 44 chr1 173088893 173089256 -69575097 + L2 LINE L2 1832 2207 -1107 305 250 83 28 chr1 173089558 173089666 -69574687 + L2 LINE L2 3154 3267 -5 2192 90 0 0 chr1 173090059 173090327 -69574026 + AluSg SINE Alu 15 282 -28 195 42 0 0 chr1 173090327 173090351 -69574002 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1092 284 35 11 chr1 173090547 173090924 -69573429 + MLT1J LTR MaLR 16 401 -110 1574 165 28 84 chr1 173091093 173091414 -69572939 + AluJb SINE Alu 1 303 -9 354 341 23 28 chr1 173092426 173092602 -69571751 - MIR3 SINE MIR -7 201 27 1132 167 28 14 chr1 173093036 173093252 -69571101 - MER20 DNA MER1_type 0 219 1 220 322 41 41 chr1 173093560 173093681 -69570672 - L2 LINE L2 -2 3311 3191 295 254 91 27 chr1 173094430 173094540 -69569813 + HAL1 LINE L1 607 723 -1784 556 290 45 25 chr1 173094684 173094884 -69569469 - MIR SINE MIR -26 236 33 431 317 50 6 chr1 173095407 173095587 -69568766 - MIR SINE MIR -26 236 49 2152 134 0 0 chr1 173095978 173096276 -69568077 - AluSx SINE Alu -14 298 1 250 363 95 22 chr1 173096402 173096581 -69567772 - MIR3 SINE MIR -14 194 3 353 305 53 0 chr1 173097013 173097108 -69567245 + L2 LINE L2 3209 3308 -5 294 137 0 0 chr1 173097148 173097199 -69567154 - L1P LINE L1 -1353 4793 4743 412 233 120 9 chr1 173098511 173098635 -69565718 + MER5A DNA MER1_type 12 163 -26 203 273 15 0 chr1 173098693 173098759 -69565594 + L2 LINE L2 1944 2010 -1304 4899 169 32 4 chr1 173098771 173100481 -69563872 - L1PB4 LINE L1 0 6156 4405 369 0 0 0 chr1 173100481 173100522 -69563831 + (TG)n Simple_repeat Simple_repeat 1 41 0 4899 169 32 4 chr1 173100522 173100566 -69563787 - L1PB4 LINE L1 -1751 4405 4364 2218 282 145 7 chr1 173100566 173101536 -69562817 + L2 LINE L2 1997 3149 -164 2249 109 0 3 chr1 173101536 173101829 -69562524 + AluSx SINE Alu 1 292 -20 2218 282 145 7 chr1 173101829 173102009 -69562344 + L2 LINE L2 3149 3303 -10 2397 101 3 0 chr1 173103011 173103319 -69561034 - AluSp SINE Alu -4 309 1 335 295 27 60 chr1 173103472 173103621 -69560732 + MIR3 SINE MIR 15 158 -50 778 219 6 19 chr1 173105291 173105451 -69558902 + FRAM SINE Alu 1 158 -18 713 268 152 9 chr1 173105464 173105690 -69558663 + MIR SINE MIR 15 262 0 587 240 57 29 chr1 173105990 173106165 -69558188 + MIR SINE MIR 80 259 -3 2525 117 28 48 chr1 173106577 173106937 -69557416 + MSTB LTR MaLR 1 352 -74 1940 131 20 10 chr1 173106937 173107105 -69557248 - AluJb SINE Alu -8 304 130 2130 126 3 0 chr1 173107105 173107399 -69556954 - AluSq SINE Alu -18 295 1 1940 131 20 10 chr1 173107399 173107527 -69556826 - AluJb SINE Alu -182 130 5 2525 117 28 48 chr1 173107527 173107601 -69556752 + MSTB LTR MaLR 352 426 0 295 301 107 10 chr1 173107698 173107876 -69556477 + L2 LINE L2 2439 2639 -675 2163 99 35 0 chr1 173107876 173108160 -69556193 + AluSx SINE Alu 1 294 -18 295 301 107 10 chr1 173108160 173108177 -69556176 + L2 LINE L2 2639 2653 -661 206 71 0 0 chr1 173108996 173109024 -69555329 + L2 LINE L2 3244 3271 -1 1764 136 7 71 chr1 173109159 173109469 -69554884 + AluJo SINE Alu 1 290 -22 291 54 0 0 chr1 173109472 173109509 -69554844 + (CA)n Simple_repeat Simple_repeat 2 38 0 2295 89 3 0 chr1 173109552 173109863 -69554490 + AluSp SINE Alu 1 312 0 25 31 0 0 chr1 173110647 173110679 -69553674 + AT_rich Low_complexity Low_complexity 1 32 0 265 256 214 17 chr1 173113547 173113664 -69550689 - MIR3 SINE MIR -2 206 67 1525 205 151 7 chr1 173113864 173114266 -69550087 + MLT2B1 LTR ERVL 3 476 -44 261 0 0 0 chr1 173114266 173114295 -69550058 + (CA)n Simple_repeat Simple_repeat 2 30 0 1525 205 151 7 chr1 173114295 173114335 -69550018 + MLT2B1 LTR ERVL 476 509 -11 556 303 107 15 chr1 173115378 173115863 -69548490 - L1ME3A LINE L1 -321 5849 5315 445 288 86 29 chr1 173116003 173116142 -69548211 - MER91A DNA MER1_type -3 193 47 * 681 144 10 0 chr1 173116134 173116238 -69548115 + MER5A DNA MER1_type 85 189 0 718 270 43 61 chr1 173116239 173116341 -69548012 - L1MC/D LINE L1 -2039 5769 5667 212 0 36 0 chr1 173116341 173116369 -69547984 + (TA)n Simple_repeat Simple_repeat 1 29 0 718 270 43 61 chr1 173116369 173116592 -69547761 - L1MC/D LINE L1 -2141 5667 5450 225 280 40 0 chr1 173117398 173117448 -69546905 + MIR SINE MIR 63 114 -148 593 240 0 0 chr1 173117622 173117751 -69546602 + MER3 DNA MER1_type 2 130 -79 298 298 0 0 chr1 173117792 173117896 -69546457 - L1MA9 LINE L1 -39 6273 6170 2338 95 0 7 chr1 173117921 173118225 -69546128 - AluY SINE Alu -9 302 1 283 189 0 0 chr1 173118226 173118279 -69546074 + MER3 DNA MER1_type 152 204 -5 311 287 15 45 chr1 173118339 173118506 -69545847 + MER5A DNA MER1_type 1 162 -16 22 0 0 0 chr1 173119638 173119660 -69544693 + AT_rich Low_complexity Low_complexity 1 22 0 32 67 0 0 chr1 173119859 173119919 -69544434 + AT_rich Low_complexity Low_complexity 1 60 0 2326 56 20 36 chr1 173120406 173120712 -69543641 - AluY SINE Alu -10 301 1 256 311 244 42 chr1 173121193 173121624 -69542729 + L2 LINE L2 2224 2741 -573 2449 93 49 36 chr1 173123463 173123850 -69540503 - L1MA5 LINE L1 -9 6291 5900 2264 89 17 0 chr1 173124058 173124351 -69540002 + AluSx SINE Alu 4 301 -11 1262 94 0 0 chr1 173124351 173124511 -69539842 + AluSp SINE Alu 134 293 -20 390 215 21 32 chr1 173124634 173124727 -69539626 + L1ME4a LINE L1 5961 6052 -69 2787 99 20 0 chr1 173125306 173125699 -69538654 - L1MA3 LINE L1 0 6305 5905 11870 163 29 14 chr1 173125707 173125793 -69538560 - L1 LINE L1 -748 6817 6734 2059 126 0 13 chr1 173125793 173126094 -69538259 - AluSx SINE Alu 0 312 16 11870 163 29 14 chr1 173126094 173128247 -69536106 - L1 LINE L1 -831 6734 4545 20837 116 114 14 chr1 173128258 173129429 -69534924 - L1 LINE L1 -3647 3918 2865 2148 135 3 0 chr1 173129429 173129740 -69534613 - AluSx SINE Alu 0 312 1 20837 116 114 14 chr1 173129740 173132115 -69532238 - L1 LINE L1 -4700 2865 17 469 236 25 1 chr1 173132414 173132559 -69531794 - L1ME1 LINE L1 0 6334 6028 2046 247 123 5 chr1 173134163 173134190 -69530163 + HsTC2c DNA Tc2 2 24 -1874 2409 99 0 0 chr1 173134190 173134502 -69529851 - AluSx SINE Alu 0 312 1 2046 247 123 5 chr1 173134502 173135109 -69529244 + HsTC2c DNA Tc2 24 711 -18 3920 113 6 17 chr1 173135319 173135851 -69528502 - MER1A DNA MER1_type -1 526 1 210 284 0 27 chr1 173136680 173136754 -69527599 - MIR SINE MIR -25 237 166 3119 109 26 0 chr1 173137252 173137682 -69526671 + L1PA16 LINE L1 5717 6157 -9 1779 156 0 39 chr1 173137684 173137825 -69526528 + AluJb SINE Alu 1 146 -166 2103 99 7 0 chr1 173137825 173138121 -69526232 + AluSg SINE Alu 9 306 0 1779 156 0 39 chr1 173138121 173138285 -69526068 + AluJb SINE Alu 146 295 -17 1605 153 8 19 chr1 173138454 173138715 -69525638 + AluJb SINE Alu 30 287 -25 22 0 0 0 chr1 173138809 173138831 -69525522 + AT_rich Low_complexity Low_complexity 1 22 0 196 324 40 0 chr1 173139156 173139230 -69525123 - MIR3 SINE MIR -7 201 125 672 251 38 46 chr1 173139635 173139874 -69524479 - MLT1D LTR MaLR -6 499 263 231 114 0 0 chr1 173139890 173139925 -69524428 + (TG)n Simple_repeat Simple_repeat 2 36 0 719 178 166 6 chr1 173139930 173140099 -69524254 - MLT1D LTR MaLR -308 197 2 1079 191 12 0 chr1 173140355 173140528 -69523825 - FAM SINE Alu 0 175 1 266 301 0 48 chr1 173140698 173140781 -69523572 - L2 LINE L2 -1 3271 3193 533 243 36 56 chr1 173140876 173141085 -69523268 + MIR SINE MIR 3 211 -51 207 373 60 39 chr1 173141354 173141587 -69522766 - L2 LINE L2 -633 2681 2444 238 216 0 41 chr1 173141626 173141723 -69522630 + CT-rich Low_complexity Low_complexity 2 94 0 227 224 60 45 chr1 173142285 173142352 -69522001 - L2 LINE L2 0 3313 3246 2280 84 7 3 chr1 173142992 173143289 -69521064 - AluSp SINE Alu -15 298 1 549 257 128 5 chr1 173143981 173144168 -69520185 + MIR SINE MIR 4 213 -49 407 40 0 0 chr1 173144644 173144694 -69519659 - AluSp/q SINE Alu -14 299 250 404 305 102 24 chr1 173144721 173145092 -69519261 - L1ME LINE L1 -512 5658 5259 409 312 114 15 chr1 173146708 173146910 -69517443 - MIR SINE MIR -38 224 3 198 308 258 43 chr1 173147180 173147741 -69516612 + L2 LINE L2 1946 2695 -619 215 216 20 20 chr1 173147741 173147792 -69516561 + MIR SINE MIR 101 151 -111 198 308 258 43 chr1 173147792 173147803 -69516550 + L2 LINE L2 2695 2702 -612 1592 123 135 0 chr1 173147805 173148097 -69516256 - MER1B DNA MER1_type 0 339 1 266 361 69 43 chr1 173148429 173148644 -69515709 + L2 LINE L2 2973 3198 -74 1160 221 53 90 chr1 173148644 173149055 -69515298 - MSTD LTR MaLR 0 396 1 266 361 69 43 chr1 173149055 173149116 -69515237 + L2 LINE L2 3198 3256 -16 235 192 51 90 chr1 173149138 173149216 -69515137 + MIR SINE MIR 118 192 -70 2240 106 0 0 chr1 173149904 173150229 -69514124 + AluSq SINE Alu 2 326 0 583 254 15 0 chr1 173151454 173151588 -69512765 + MIR SINE MIR 62 197 -65 219 264 132 0 chr1 173151593 173151684 -69512669 + MIR SINE MIR 156 258 -4 27 29 0 0 chr1 173151802 173151836 -69512517 + AT_rich Low_complexity Low_complexity 1 34 0 868 145 0 0 chr1 173151847 173151964 -69512389 - FLAM_C SINE Alu -16 117 1 234 229 31 0 chr1 173152552 173152648 -69511705 + (TA)n Simple_repeat Simple_repeat 2 100 0 180 77 0 0 chr1 173153400 173153426 -69510927 + (CA)n Simple_repeat Simple_repeat 1 26 0 969 179 12 6 chr1 173154503 173154665 -69509688 + FRAM SINE Alu 1 163 -13 437 246 39 23 chr1 173154762 173154821 -69509532 - MER94 DNA DNA 0 134 77 2460 118 33 36 chr1 173154821 173155186 -69509167 - THE1B LTR MaLR 0 364 1 437 246 39 23 chr1 173155186 173155256 -69509097 - MER94 DNA DNA -57 77 3 2146 105 7 13 chr1 173156323 173156628 -69507725 + AluSx SINE Alu 3 305 -7 23 0 0 0 chr1 173156668 173156691 -69507662 + AT_rich Low_complexity Low_complexity 1 23 0 2165 106 27 0 chr1 173156823 173157124 -69507229 - AluSq SINE Alu -4 309 1 417 293 92 29 chr1 173157226 173157400 -69506953 - MIR SINE MIR -46 216 32 216 265 0 0 chr1 173157613 173157681 -69506672 + T-rich Low_complexity Low_complexity 1 68 0 2002 148 3 3 chr1 173157726 173158031 -69506322 + AluSx SINE Alu 1 305 -7 2196 92 13 7 chr1 173158482 173158785 -69505568 - AluSx SINE Alu -7 305 1 1782 153 6 32 chr1 173158964 173159278 -69505075 + MER1B DNA MER1_type 1 306 -33 591 287 16 37 chr1 173159317 173159561 -69504792 - L2 LINE L2 -877 2437 2199 219 335 180 0 chr1 173159726 173159932 -69504421 - L2 LINE L2 -1138 2176 1934 25 31 0 0 chr1 173160492 173160524 -69503829 + AT_rich Low_complexity Low_complexity 1 32 0 467 45 15 0 chr1 173160616 173160682 -69503671 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 898 284 82 29 chr1 173160769 173161219 -69503134 - MLT1J LTR MaLR -35 476 3 2248 131 0 0 chr1 173161996 173162308 -69502045 - AluSx SINE Alu 0 312 1 2877 115 8 66 chr1 173162335 173162832 -69501521 + LTR9 LTR ERV1 1 468 -144 1049 134 81 5 chr1 173162887 173163096 -69501257 + Charlie5 DNA MER1_type 2361 2585 -27 202 0 0 83 chr1 173163178 173163214 -69501139 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1636 161 0 57 chr1 173163222 173163521 -69500832 - AluJo SINE Alu -15 297 16 400 348 71 24 chr1 173163568 173163821 -69500532 - L3 LINE CR1 -64 1513 1249 654 289 28 30 chr1 173164340 173164357 -69499996 + MLT1H LTR MaLR 48 64 -485 2087 133 0 0 chr1 173164357 173164657 -69499696 + AluSx SINE Alu 1 300 -12 654 289 28 30 chr1 173164657 173164861 -69499492 + MLT1H LTR MaLR 64 299 -250 358 234 62 67 chr1 173164869 173165050 -69499303 + MLT1H LTR MaLR 278 543 -6 565 262 55 0 chr1 173165146 173165329 -69499024 + L2 LINE L2 2819 3011 -302 3048 103 25 35 chr1 173165418 173166011 -69498342 + MER4E LTR ERV1 1 766 0 2402 56 0 47 chr1 173166291 173166611 -69497742 + AluY SINE Alu 1 305 -6 917 257 102 30 chr1 173166648 173167010 -69497343 + MLT1D LTR MaLR 1 388 -117 284 330 83 0 chr1 173167103 173167212 -69497141 + MIR3 SINE MIR 58 175 -33 238 114 0 0 chr1 173167314 173167349 -69497004 + MER103 DNA DNA 1 35 -131 260 258 15 0 chr1 173167708 173167774 -69496579 + MLT1K LTR MaLR 522 588 0 2022 123 0 58 chr1 173168050 173168375 -69495978 - AluSx SINE Alu -6 306 1 267 104 0 0 chr1 173168447 173168495 -69495858 + (TG)n Simple_repeat Simple_repeat 1 48 0 1707 158 32 4 chr1 173168495 173168763 -69495590 - AluJb SINE Alu -31 281 3 198 0 0 0 chr1 173169425 173169447 -69494906 + (A)n Simple_repeat Simple_repeat 1 22 0 2362 93 3 3 chr1 173169759 173170061 -69494292 - AluSg SINE Alu -8 302 1 275 323 68 12 chr1 173170071 173170232 -69494121 - L1ME4a LINE L1 -3 6118 5949 32 26 0 0 chr1 173170722 173170761 -69493592 + AT_rich Low_complexity Low_complexity 1 39 0 400 293 20 34 chr1 173170982 173171129 -69493224 - LTR67 LTR ERVL -410 147 3 3062 208 39 34 chr1 173171238 173171306 -69493047 - L1ME1 LINE L1 -12 6154 6088 509 62 0 175 chr1 173171306 173171403 -69492950 + MADE1 DNA Mariner 1 80 0 3062 208 39 34 chr1 173171403 173172046 -69492307 - L1ME1 LINE L1 -78 6088 5439 1979 132 11 0 chr1 173172053 173172375 -69491978 + AluSx SINE Alu 1 325 0 1623 194 96 27 chr1 173172469 173172876 -69491477 + MSTB2 LTR MaLR 15 449 -8 834 279 83 81 chr1 173173422 173173905 -69490448 + L3 LINE CR1 649 1132 -445 234 299 156 47 chr1 173173933 173174186 -69490167 + L2 LINE L2 1883 2190 -1124 1537 164 65 4 chr1 173174186 173174461 -69489892 - AluJb SINE Alu -20 292 1 234 299 156 47 chr1 173174461 173174572 -69489781 + L2 LINE L2 2190 2287 -1027 4858 59 32 6 chr1 173174572 173175667 -69488686 + MER11A LTR ERVK 1 1266 0 462 302 134 49 chr1 173176348 173176735 -69487618 + L3 LINE CR1 1157 1576 -1 252 86 0 0 chr1 173177330 173177365 -69486988 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1018 202 98 104 chr1 173177949 173178305 -69486048 + MLT1H LTR MaLR 1 354 -195 287 286 0 0 chr1 173178429 173178506 -69485847 + MIR SINE MIR 60 136 -126 221 333 56 0 chr1 173178575 173178647 -69485706 - MIR SINE MIR -63 145 70 313 261 54 11 chr1 173178828 173178920 -69485433 + L2 LINE L2 3208 3303 -10 1359 25 44 0 chr1 173179977 173180135 -69484218 + L1PA6 LINE L1 5989 6153 -1 192 256 39 77 chr1 173180239 173180317 -69484036 + L2 LINE L2 3137 3211 -61 2106 121 7 0 chr1 173180732 173181021 -69483332 - AluSx SINE Alu -21 291 1 313 282 29 0 chr1 173181783 173181886 -69482467 + L2 LINE L2 3208 3313 0 1688 183 57 0 chr1 173183209 173183488 -69480865 - AluJo SINE Alu -17 295 1 1957 129 4 0 chr1 173184526 173184830 -69479523 + AluSx SINE Alu 5 309 0 322 263 153 8 chr1 173184992 173185110 -69479243 + L2 LINE L2 3173 3307 -6 216 97 0 0 chr1 173185177 173185208 -69479145 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 215 345 62 18 chr1 173185309 173185422 -69478931 + L2 LINE L2 3147 3264 -8 239 293 138 52 chr1 173187528 173187644 -69476709 - L2 LINE L2 0 3272 3147 324 289 22 67 chr1 173187929 173188064 -69476289 + MER91B DNA MER1_type 1 129 -61 538 209 9 19 chr1 173188079 173188184 -69476169 + MER91B DNA MER1_type 87 190 0 2239 120 0 7 chr1 173188385 173188686 -69475667 - AluSx SINE Alu -13 299 1 196 208 21 42 chr1 173188944 173188992 -69475361 - L3b LINE CR1 -246 1337 1291 271 294 39 33 chr1 173189010 173189163 -69475190 + MIR SINE MIR 102 255 -7 207 247 0 49 chr1 173189164 173189245 -69475108 + CT-rich Low_complexity Low_complexity 4 80 0 1314 205 104 101 chr1 173189871 173190287 -69474066 - L1ME1 LINE L1 -5 6161 5741 8411 14 0 0 chr1 173190287 173191609 -69472744 - L1PA3 LINE L1 -1 6154 4833 1314 205 104 101 chr1 173191609 173191767 -69472586 - L1ME1 LINE L1 -425 5741 5585 266 300 12 0 chr1 173192322 173192402 -69471951 + MIR SINE MIR 68 148 -60 217 358 85 40 chr1 173192445 173192646 -69471707 + L2 LINE L2 2969 3178 -94 324 262 19 78 chr1 173192858 173192961 -69471392 + MER5B DNA MER1_type 74 170 -8 180 152 0 0 chr1 173193710 173193743 -69470610 + (TAG)n Simple_repeat Simple_repeat 3 35 0 329 261 122 0 chr1 173193790 173193905 -69470448 + MIR SINE MIR 48 176 -86 707 223 8 0 chr1 173194276 173194406 -69469947 + MER58B DNA MER1_type 210 340 -1 803 329 160 8 chr1 173195067 173195560 -69468793 + L3 LINE CR1 999 1566 -11 2515 77 0 3 chr1 173195698 173196010 -69468343 - AluY SINE Alu 0 311 1 250 290 56 16 chr1 173196206 173196331 -69468022 + MIR SINE MIR 64 192 -58 2166 117 3 16 chr1 173197685 173197992 -69466361 - AluSx SINE Alu -9 303 1 235 143 0 0 chr1 173198348 173198383 -69465970 + MER5B DNA MER1_type 1 35 -143 1840 140 0 19 chr1 173198427 173198698 -69465655 + AluSx SINE Alu 1 266 -46 264 32 0 0 chr1 173198704 173198735 -69465618 + MER5B DNA MER1_type 137 167 -11 329 288 71 57 chr1 173200293 173200505 -69463848 + L1ME4a LINE L1 5442 5656 -2152 207 162 0 0 chr1 173200517 173200554 -69463799 + (TA)n Simple_repeat Simple_repeat 2 38 0 229 192 55 14 chr1 173200561 173200634 -69463719 + L1MCa LINE L1 1996 2071 -4355 296 269 66 50 chr1 173200660 173200842 -69463511 + L1ME4a LINE L1 5744 5928 -193 1082 176 39 0 chr1 173201187 173201369 -69462984 - MER5A DNA MER1_type 0 189 1 2739 134 58 2 chr1 173201372 173201783 -69462570 + MER57B LTR ERV1 1 434 0 4341 131 27 22 chr1 173201783 173202420 -69461933 + MER57B-int LTR ERV1 1 643 -6894 2115 91 50 3 chr1 173202420 173202717 -69461636 - AluY SINE Alu 0 311 1 4341 131 27 22 chr1 173202717 173202751 -69461602 + MER57B-int LTR ERV1 643 675 -6862 3493 139 41 13 chr1 173202745 173203486 -69460867 + MER57B-int LTR ERV1 288 1136 -4810 * 2160 147 67 6 chr1 173203481 173203841 -69460512 + MER57B-int LTR ERV1 1990 2371 -5166 * 5749 172 95 35 chr1 173203840 173205633 -69458720 + MER57B-int LTR ERV1 2042 5205 -2241 13445 87 98 61 chr1 173205636 173207786 -69456567 + MER57B-int LTR ERV1 5307 7535 -2 233 29 29 0 chr1 173207786 173207820 -69456533 + (TTA)n Simple_repeat Simple_repeat 3 37 0 6663 53 5 0 chr1 173207820 173208627 -69455726 - L1PA6 LINE L1 -18 6136 5326 3135 119 9 5 chr1 173208641 173209071 -69455282 + MER57B LTR ERV1 1 432 -2 209 182 0 0 chr1 173209366 173209399 -69454954 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 255 224 0 0 chr1 173209414 173209490 -69454863 + GA-rich Low_complexity Low_complexity 1 76 0 321 335 58 0 chr1 173210639 173210794 -69453559 - MIR3 SINE MIR -3 205 42 693 237 87 22 chr1 173211605 173211851 -69452502 + MIR SINE MIR 8 262 0 457 85 17 0 chr1 173212355 173212414 -69451939 - U7 snRNA snRNA -2 61 2 235 238 44 155 chr1 173213194 173213253 -69451100 - MIR3 SINE MIR -7 201 137 1221 189 18 5 chr1 173213253 173213470 -69450883 - MER58A DNA MER1_type -2 222 3 235 238 44 155 chr1 173213470 173213591 -69450762 - MIR3 SINE MIR -71 137 41 259 341 94 0 chr1 173213661 173213831 -69450522 - L2 LINE L2 0 3272 3087 394 22 0 0 chr1 173217316 173217362 -69446991 - MADE1 DNA Mariner -34 46 1 2315 133 33 28 chr1 173217793 173218155 -69446198 + THE1B LTR MaLR 1 364 0 186 71 0 0 chr1 173218874 173218902 -69445451 + (T)n Simple_repeat Simple_repeat 1 28 0 223 333 132 8 chr1 173219569 173219698 -69444655 + MIR3 SINE MIR 63 207 -1 1599 193 31 10 chr1 173219735 173220025 -69444328 - AluJo SINE Alu -16 296 1 2105 122 7 10 chr1 173220387 173220691 -69443662 - AluSg SINE Alu -7 303 1 524 235 17 0 chr1 173220911 173221026 -69443327 + L2 LINE L2 3154 3270 -2 341 226 0 108 chr1 173221029 173221122 -69443231 + MIR SINE MIR 92 174 -88 202 182 0 0 chr1 173221413 173221446 -69442907 + polypurine Low_complexity Low_complexity 2 34 0 2227 89 7 3 chr1 173221645 173221937 -69442416 + AluSg SINE Alu 1 293 -17 212 294 15 0 chr1 173222316 173222384 -69441969 - MIR SINE MIR -98 164 96 881 198 82 26 chr1 173223373 173223605 -69440748 - MIR SINE MIR -17 245 1 1688 175 21 10 chr1 173224348 173224665 -69439688 + AluJo SINE Alu 1 312 0 10825 53 11 1 chr1 173224782 173226939 -69437414 - L1PA6 LINE L1 0 6154 3983 210 278 14 14 chr1 173227792 173227864 -69436489 + MIR SINE MIR 189 260 -2 453 247 8 86 chr1 173228285 173228479 -69435874 - MIR3 SINE MIR -23 185 6 * 1743 307 120 32 chr1 173228466 173229349 -69435004 - L3 LINE CR1 -5 1572 612 376 335 70 22 chr1 173229977 173230162 -69434191 - MIR SINE MIR -5 257 64 925 177 0 21 chr1 173230300 173230486 -69433867 - L1MD2 LINE L1 -41 6318 6137 2347 88 0 3 chr1 173230526 173230822 -69433531 - AluSq SINE Alu -18 295 1 350 245 21 21 chr1 173230874 173230968 -69433385 - MIR3 SINE MIR -6 202 109 22 35 0 0 chr1 173231051 173231080 -69433273 + AT_rich Low_complexity Low_complexity 1 29 0 708 304 123 93 chr1 173231591 173231876 -69432477 + L3 LINE CR1 343 618 -959 252 59 0 0 chr1 173231876 173231910 -69432443 + (TG)n Simple_repeat Simple_repeat 2 35 0 708 304 123 93 chr1 173231910 173232740 -69431613 + L3 LINE CR1 618 1491 -86 306 318 75 9 chr1 173232844 173232951 -69431402 + L2 LINE L2 3134 3247 -25 204 364 13 0 chr1 173232985 173233062 -69431291 + L3 LINE CR1 1495 1572 -5 1138 145 16 5 chr1 173233159 173233345 -69431008 - MER5A DNA MER1_type 0 189 2 389 280 166 6 chr1 173233365 173233397 -69430956 - MER5A DNA MER1_type -1 188 162 2340 74 3 35 chr1 173233397 173233708 -69430645 + AluSq SINE Alu 1 301 -12 389 280 166 6 chr1 173233708 173233832 -69430521 - MER5A DNA MER1_type -27 162 7 199 167 39 103 chr1 173234156 173234234 -69430119 - L3b LINE CR1 -224 1359 1287 249 287 61 77 chr1 173235324 173235505 -69428848 - MIR SINE MIR -1 261 84 765 177 31 8 chr1 173236404 173236534 -69427819 + FLAM_C SINE Alu 1 133 -10 41157 30 21 1 chr1 173236542 173242567 -69421786 + L1HS LINE L1 7 6155 0 23 0 0 0 chr1 173242567 173242590 -69421763 + AT_rich Low_complexity Low_complexity 1 23 0 313 238 88 12 chr1 173243339 173243419 -69420934 + L2 LINE L2 3145 3230 -42 343 320 109 0 chr1 173243419 173243575 -69420778 + MIR3 SINE MIR 34 206 -2 185 160 0 20 chr1 173243696 173243746 -69420607 + CT-rich Low_complexity Low_complexity 2 50 0 314 156 31 0 chr1 173243764 173243828 -69420525 + Charlie5 DNA MER1_type 2558 2623 0 282 235 0 0 chr1 173244618 173244699 -69419654 + (CA)n Simple_repeat Simple_repeat 2 82 0 1273 171 96 0 chr1 173244852 173245133 -69419220 - MER33 DNA MER1_type -15 309 2 234 308 46 0 chr1 173246103 173246168 -69418185 - L2 LINE L2 -50 3222 3155 790 312 117 35 chr1 173246277 173246635 -69417718 - L2 LINE L2 -906 2408 2002 1668 81 5 0 chr1 173246635 173246844 -69417509 + AluSp SINE Alu 87 296 -17 790 312 117 35 chr1 173246844 173246946 -69417407 - L2 LINE L2 -1312 2002 1910 365 203 13 13 chr1 173246946 173247025 -69417328 - MER2 DNA MER2_type 0 345 267 231 73 24 0 chr1 173247113 173247154 -69417199 - MER2 DNA MER2_type -172 173 132 244 49 24 0 chr1 173247232 173247273 -69417080 - MER2 DNA MER2_type -172 173 132 1784 155 25 31 chr1 173247282 173247599 -69416754 - MER1B DNA MER1_type -24 315 1 823 176 0 7 chr1 173247599 173247739 -69416614 - MER2 DNA MER2_type -206 139 1 195 246 0 77 chr1 173247746 173247811 -69416542 - L2 LINE L2 -1414 1900 1841 258 321 60 30 chr1 173247881 173248015 -69416338 - L2 LINE L2 -1487 1827 1690 1393 102 0 5 chr1 173248022 173248205 -69416148 + AluSx SINE Alu 1 184 -128 2255 103 0 3 chr1 173248205 173248495 -69415858 - AluSg SINE Alu -21 289 1 1393 102 0 5 chr1 173248495 173248507 -69415846 + AluSx SINE Alu 184 195 -117 325 272 40 56 chr1 173248542 173248667 -69415686 - L2 LINE L2 -2126 1188 1066 197 339 142 31 chr1 173249439 173249566 -69414787 - MIR3 SINE MIR -38 170 30 355 269 28 14 chr1 173249677 173249822 -69414531 + L1MC5 LINE L1 7784 7930 -31 2099 111 3 44 chr1 173250089 173250404 -69413949 - AluSq SINE Alu -11 302 1 2220 118 0 0 chr1 173250454 173250750 -69413603 - AluSg SINE Alu -14 296 1 26 50 0 0 chr1 173250960 173251000 -69413353 + AT_rich Low_complexity Low_complexity 1 40 0 2959 276 122 18 chr1 173251717 173252407 -69411946 + L2 LINE L2 1695 2533 -781 2174 117 3 7 chr1 173252407 173252716 -69411637 - AluSg SINE Alu -2 308 1 2959 276 122 18 chr1 173252716 173253078 -69411275 + L2 LINE L2 2533 2856 -458 357 266 139 19 chr1 173253163 173253321 -69411032 + MER5B DNA MER1_type 2 178 0 207 309 204 12 chr1 173253440 173253602 -69410751 - L3 LINE CR1 -16 1561 1369 * 739 280 201 25 chr1 173253593 173253957 -69410396 + L2 LINE L2 2886 3313 0 261 336 84 14 chr1 173254169 173254312 -69410041 - L3 LINE CR1 -451 1126 974 1093 149 16 112 chr1 173254512 173254834 -69409519 - L1MB3 LINE L1 0 6183 5893 487 133 88 18 chr1 173254907 173255020 -69409333 - L1MB3 LINE L1 -264 5907 5787 190 326 11 22 chr1 173255030 173255122 -69409231 - L3 LINE CR1 -820 757 667 458 260 72 88 chr1 173255315 173255496 -69408857 + MIR SINE MIR 51 228 -34 1541 167 21 24 chr1 173255822 173256110 -69408243 - AluJo SINE Alu -25 287 1 205 333 111 0 chr1 173256882 173256990 -69407363 + L2 LINE L2 3188 3307 -6 2411 68 0 0 chr1 173257033 173257325 -69407028 - AluSc SINE Alu -17 292 1 2320 91 14 3 chr1 173257327 173257623 -69406730 - AluSx SINE Alu -13 299 1 198 0 0 0 chr1 173260108 173260130 -69404223 + (T)n Simple_repeat Simple_repeat 1 22 0 3090 183 108 32 chr1 173260692 173262024 -69402329 - L1MB4 LINE L1 -2 6178 4734 1893 238 132 9 chr1 173262203 173262862 -69401491 + L1M4 LINE L1 298 1037 -5505 2352 163 77 9 chr1 173262867 173263320 -69401033 + Tigger7 DNA MER2_type 7 490 -243 597 135 151 54 chr1 173263352 173263537 -69400816 + Tigger7 DNA MER2_type 2288 2490 -1 1643 215 168 11 chr1 173263537 173264449 -69399904 + L1M4 LINE L1 1038 2103 -4543 304 199 85 2 chr1 173264455 173264537 -69399816 - MLT1A2 LTR MaLR -7 383 287 1720 162 194 20 chr1 173264537 173265191 -69399162 + L1MDa LINE L1 1823 2616 -3924 2387 77 0 3 chr1 173265193 173265491 -69398862 + AluY SINE Alu 1 297 -14 2178 235 97 28 chr1 173265534 173266006 -69398347 + L1M4 LINE L1 3956 4394 -2250 1780 149 37 14 chr1 173266006 173266301 -69398052 + AluJb SINE Alu 1 302 -10 2178 235 97 28 chr1 173266301 173266680 -69397673 + L1M4 LINE L1 4394 4866 -1778 23 0 0 0 chr1 173266692 173266715 -69397638 + AT_rich Low_complexity Low_complexity 1 23 0 581 203 89 30 chr1 173266748 173266985 -69397368 + L1M4 LINE L1 3797 4047 -2099 1658 191 89 45 chr1 173267000 173267226 -69397127 - MLT1C LTR MaLR -4 463 248 2181 135 0 3 chr1 173267226 173267529 -69396824 - AluSx SINE Alu -8 304 3 1658 191 89 45 chr1 173267529 173267742 -69396611 - MLT1C LTR MaLR -219 248 5 1744 213 24 95 chr1 173267746 173268292 -69396061 - MLT1C-int LTR MaLR 0 1371 865 3091 148 21 126 chr1 173268363 173268928 -69395425 - MLT1C-int LTR MaLR -484 887 264 2196 106 3 3 chr1 173268928 173269229 -69395124 - AluSx SINE Alu -7 305 5 3091 148 21 126 chr1 173269229 173269256 -69395097 - MLT1C-int LTR MaLR -1107 264 236 828 198 23 47 chr1 173269256 173269428 -69394925 - FAM SINE Alu -4 171 4 3091 148 21 126 chr1 173269428 173269693 -69394660 - MLT1C-int LTR MaLR -1135 236 119 1272 186 13 9 chr1 173269694 173269920 -69394433 + AluJo SINE Alu 73 299 -13 2075 122 30 10 chr1 173269956 173270532 -69393821 + L1MA9 LINE L1 5003 5587 -725 704 237 53 0 chr1 173270532 173270701 -69393652 + AluJo SINE Alu 113 290 -22 2058 133 28 68 chr1 173270701 173271130 -69393223 + L1MA9 LINE L1 5614 6025 -287 472 188 10 10 chr1 173271193 173271289 -69393064 + MLT1A2 LTR MaLR 1 96 -278 393 40 67 53 chr1 173271289 173271364 -69392989 + L1MA4 LINE L1 6219 6294 -6 1978 163 0 10 chr1 173271426 173271733 -69392620 + AluJb SINE Alu 1 304 -8 296 272 95 34 chr1 173271771 173271875 -69392478 + HAL1 LINE L1 1209 1326 -1181 2354 97 0 0 chr1 173271875 173272184 -69392169 - AluY SINE Alu -2 309 1 296 272 95 34 chr1 173272184 173272226 -69392127 + HAL1 LINE L1 1326 1364 -1143 2317 100 3 0 chr1 173272411 173272712 -69391641 - AluSx SINE Alu -10 302 1 1972 137 3 3 chr1 173272794 173273087 -69391266 - AluSx SINE Alu -19 293 1 21 0 0 0 chr1 173273090 173273111 -69391242 + AT_rich Low_complexity Low_complexity 1 21 0 4759 144 51 28 chr1 173273377 173274223 -69390130 + MER6 DNA MER2_type 1 865 0 396 299 161 18 chr1 173274660 173274877 -69389476 + MIR SINE MIR 13 260 -2 506 325 55 24 chr1 173275497 173275912 -69388441 + ERVL LTR ERVL 1248 1675 -4089 856 292 101 12 chr1 173276019 173276365 -69387988 + ERVL LTR ERVL 1845 2221 -3543 32 43 0 0 chr1 173278586 173278632 -69385721 + AT_rich Low_complexity Low_complexity 1 46 0 200 395 67 17 chr1 173279151 173279270 -69385083 + L2 LINE L2 3127 3251 -21 741 140 0 98 chr1 173279587 173279730 -69384623 + FLAM_A SINE Alu 1 129 -4 24 53 0 0 chr1 173279754 173279792 -69384561 + AT_rich Low_complexity Low_complexity 1 38 0 2707 156 32 2 chr1 173280063 173280558 -69383795 - L1PA16 LINE L1 -9 6157 5648 194 264 99 55 chr1 173280602 173280693 -69383660 - MIR3 SINE MIR -3 205 111 507 228 70 0 chr1 173280704 173280818 -69383535 - FLAM_A SINE Alu -8 125 4 2134 133 7 0 chr1 173280957 173281258 -69383095 - AluSx SINE Alu -8 304 2 30 83 0 0 chr1 173281795 173281867 -69382486 + AT_rich Low_complexity Low_complexity 1 72 0 218 194 0 0 chr1 173282095 173282131 -69382222 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1563 176 30 27 chr1 173282693 173282989 -69381364 + AluJb SINE Alu 5 301 -11 235 227 0 0 chr1 173283562 173283606 -69380747 - Alu SINE Alu -11 291 248 824 153 0 22 chr1 173283606 173283743 -69380610 - AluJb SINE Alu -178 134 1 332 212 83 0 chr1 173283848 173283980 -69380373 + L1MB3 LINE L1 6040 6182 -1 296 277 50 99 chr1 173284298 173284379 -69379974 + MIR SINE MIR 9 82 -180 728 192 0 0 chr1 173284379 173284504 -69379849 - FLAM_A SINE Alu -8 125 1 296 277 50 99 chr1 173284504 173284563 -69379790 + MIR SINE MIR 82 142 -120 1048 154 0 0 chr1 173284574 173284736 -69379617 - AluY SINE Alu -17 294 133 1891 133 26 0 chr1 173285023 173285294 -69379059 + AluSg SINE Alu 26 303 -7 469 298 15 0 chr1 173285301 173285432 -69378921 + MIR3 SINE MIR 33 165 -43 2327 103 0 6 chr1 173285749 173286061 -69378292 + AluSp SINE Alu 1 310 -3 2273 111 0 0 chr1 173286106 173286413 -69377940 + AluSq SINE Alu 1 307 -6 233 278 0 0 chr1 173287104 173287156 -69377197 - L2 LINE L2 -11 3302 3210 235 216 0 0 chr1 173287158 173287209 -69377144 + L1MC4 LINE L1 6652 6702 -1340 296 255 31 31 chr1 173287231 173287329 -69377024 - MIR SINE MIR -58 204 107 478 216 17 9 chr1 173287455 173287571 -69376782 - L1ME2 LINE L1 -9 6155 6039 1919 254 142 110 chr1 173288555 173289268 -69375085 + HAL1 LINE L1 1 690 -1817 2293 67 7 0 chr1 173289268 173289551 -69374802 - AluY SINE Alu -4 307 23 1919 254 142 110 chr1 173289551 173290133 -69374220 + HAL1 LINE L1 690 1252 -1255 2140 139 0 0 chr1 173290133 173290442 -69373911 + AluSx SINE Alu 1 309 -3 1919 254 142 110 chr1 173290442 173290510 -69373843 + HAL1 LINE L1 1252 1316 -1191 2166 131 0 3 chr1 173290510 173290823 -69373530 + AluSx SINE Alu 1 312 0 1919 254 142 110 chr1 173290823 173291505 -69372848 + HAL1 LINE L1 1316 2113 -394 821 154 23 0 chr1 173291505 173291635 -69372718 - FLAM_C SINE Alu -8 135 3 604 219 66 66 chr1 173291657 173291853 -69372500 + MLT1F LTR MaLR 5 200 -342 1069 129 0 13 chr1 173291871 173292026 -69372327 - FRAM SINE Alu -13 163 11 768 213 25 19 chr1 173292026 173292186 -69372167 + MLT1E LTR MaLR 431 591 -2 375 236 311 33 chr1 173292191 173292455 -69371898 + HAL1 LINE L1 2114 2303 -204 2176 88 16 29 chr1 173292455 173292761 -69371592 - AluSx SINE Alu -10 302 1 375 236 311 33 chr1 173292761 173292801 -69371552 + HAL1 LINE L1 2303 2503 -4 313 300 100 25 chr1 173293183 173293343 -69371010 + HAL1b LINE L1 740 911 -437 2217 116 3 3 chr1 173293408 173293719 -69370634 + AluSx SINE Alu 1 311 -1 510 253 125 21 chr1 173293981 173294402 -69369951 + L1M4 LINE L1 3594 4060 -2086 1887 147 7 13 chr1 173294402 173294708 -69369645 + AluSx SINE Alu 1 304 -8 510 253 125 21 chr1 173294708 173294774 -69369579 + L1M4 LINE L1 4060 4118 -2028 248 333 9 0 chr1 173294988 173295093 -69369260 + L1M4 LINE L1 4742 4847 -1299 338 232 189 32 chr1 173295409 173295504 -69368849 + L2 LINE L2 3159 3268 -4 23 0 0 0 chr1 173295542 173295565 -69368788 + AT_rich Low_complexity Low_complexity 1 23 0 273 339 26 17 chr1 173296416 173296531 -69367822 - L2 LINE L2 -1 3312 3197 1240 147 15 20 chr1 173297070 173297274 -69367079 - AluSg/x SINE Alu -21 291 89 1657 158 43 13 chr1 173298971 173299274 -69365079 + AluJb SINE Alu 1 312 0 2196 120 0 0 chr1 173299696 173299995 -69364358 + AluSx SINE Alu 1 299 -13 592 225 109 7 chr1 173300473 173300611 -69363742 - MIR SINE MIR -99 163 12 1126 211 136 58 chr1 173300842 173301547 -69362806 + L1MC5 LINE L1 7201 7960 -1 563 189 38 30 chr1 173303159 173303291 -69361062 - MER105 DNA DNA -41 163 31 1538 195 98 62 chr1 173304131 173304551 -69359802 + MER63B DNA MER1_type 2 436 0 21 0 0 0 chr1 173305420 173305441 -69358912 + AT_rich Low_complexity Low_complexity 1 21 0 244 210 16 16 chr1 173305675 173305737 -69358616 + (TA)n Simple_repeat Simple_repeat 1 62 0 279 330 11 11 chr1 173305737 173305828 -69358525 + MIR SINE MIR 41 131 -77 407 369 164 7 chr1 173305905 173306333 -69358020 + L2 LINE L2 2004 2498 -816 1383 283 53 0 chr1 173306333 173306746 -69357607 + L2 LINE L2 2097 2531 -783 386 309 82 67 chr1 173307314 173307579 -69356774 - L1MC4a LINE L1 -1873 5935 5662 1769 181 7 10 chr1 173307579 173307878 -69356475 - AluJo SINE Alu -14 298 1 386 309 82 67 chr1 173307878 173307968 -69356385 - L1MC4a LINE L1 -2146 5662 5575 630 235 93 25 chr1 173309648 173309852 -69354501 + MLT1J LTR MaLR 288 505 -6 181 304 62 57 chr1 173310681 173310875 -69353478 - L2 LINE L2 -433 2881 2687 409 338 92 34 chr1 173310936 173311315 -69353038 - L2 LINE L2 -783 2531 2131 22 56 0 0 chr1 173311355 173311391 -69352962 + AT_rich Low_complexity Low_complexity 1 36 0 227 351 126 29 chr1 173312173 173312347 -69352006 + L2 LINE L2 3073 3263 -9 21 71 0 0 chr1 173312443 173312485 -69351868 + AT_rich Low_complexity Low_complexity 1 42 0 891 114 0 30 chr1 173312488 173312620 -69351733 - FRAM SINE Alu -36 140 13 213 308 0 0 chr1 173314769 173314886 -69349467 + (CTGGGG)n Simple_repeat Simple_repeat 2 118 0 21 0 0 0 chr1 173315658 173315679 -69348674 + GC_rich Low_complexity Low_complexity 1 21 0 2123 219 40 26 chr1 173317021 173317552 -69346801 - MLT1F LTR MaLR -4 538 1 2010 125 16 10 chr1 173317992 173318295 -69346058 - AluSq SINE Alu -8 305 1 199 308 154 0 chr1 173318306 173318410 -69345943 - MIR SINE MIR -56 206 87 2003 109 22 4 chr1 173318702 173319000 -69345353 + AluSg SINE Alu 2 304 0 446 163 49 98 chr1 173319345 173319468 -69344885 - MIR SINE MIR -56 206 90 1714 176 24 10 chr1 173319697 173319992 -69344361 + AluJb SINE Alu 1 299 -13 727 227 53 136 chr1 173320443 173320817 -69343536 + L2 LINE L2 1801 2143 -1171 262 272 228 9 chr1 173320817 173320931 -69343422 + L2 LINE L2 2400 2538 -776 1193 142 11 0 chr1 173320931 173321121 -69343232 - Tigger1 DNA MER2_type -1 2417 2226 479 150 18 53 chr1 173321121 173321234 -69343119 + FRAM SINE Alu 43 151 -25 494 85 24 24 chr1 173321246 173321328 -69343025 - Tigger1 DNA MER2_type -182 2236 2155 40867 33 24 1 chr1 173321599 173327605 -69336748 - L1PA2 LINE L1 -5 6150 2 247 300 0 0 chr1 173327672 173327712 -69336641 + T-rich Low_complexity Low_complexity 1 40 -50 718 87 0 29 chr1 173327712 173327815 -69336538 - HY3 scRNA scRNA -1 100 1 247 300 0 0 chr1 173327815 173327864 -69336489 + T-rich Low_complexity Low_complexity 39 90 0 510 281 60 27 chr1 173328342 173328861 -69335492 - L1MEd LINE L1 -871 1619 993 461 356 60 14 chr1 173330182 173330463 -69333890 - L2 LINE L2 -1222 2092 1799 1462 130 9 18 chr1 173330663 173330886 -69333467 - AluSg/x SINE Alu -22 288 68 311 190 0 0 chr1 173330901 173330959 -69333394 + AluJ/FRAM SINE Alu 230 287 -15 12554 117 48 19 chr1 173330971 173331388 -69332965 - Tigger1 DNA MER2_type -182 2236 1833 2231 113 0 7 chr1 173331388 173331688 -69332665 - AluSg SINE Alu -12 298 1 12554 117 48 19 chr1 173331688 173333438 -69330915 - Tigger1 DNA MER2_type -585 1833 4 1348 254 69 83 chr1 173333441 173334203 -69330150 + L2 LINE L2 2536 3300 -13 1848 122 0 4 chr1 173334911 173335166 -69329187 - AluSx SINE Alu -22 290 37 332 267 59 20 chr1 173335195 173335296 -69329057 - MIR SINE MIR -98 164 60 359 293 103 0 chr1 173336127 173336243 -69328110 + MIR SINE MIR 64 191 -71 22 0 0 0 chr1 173336453 173336475 -69327878 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1 173337274 173337300 -69327053 + AT_rich Low_complexity Low_complexity 1 26 0 773 150 0 0 chr1 173337605 173337725 -69326628 + FLAM_C SINE Alu 1 120 -23 21 0 0 0 chr1 173337770 173337791 -69326562 + AT_rich Low_complexity Low_complexity 1 21 0 814 133 0 31 chr1 173339739 173339867 -69324486 - AluJo/FRAM SINE Alu -45 267 144 232 167 0 0 chr1 173339867 173339903 -69324450 + Alu SINE Alu 243 278 -22 334 349 61 8 chr1 173340026 173340158 -69324195 + L2 LINE L2 3134 3272 0 567 300 56 31 chr1 173340369 173340761 -69323592 - L1ME4a LINE L1 -273 5848 5440 2370 76 13 3 chr1 173340761 173341064 -69323289 + AluSc SINE Alu 1 306 -3 567 300 56 31 chr1 173341064 173341151 -69323202 - L1ME4a LINE L1 -681 5440 5357 25 0 0 0 chr1 173341282 173341307 -69323046 + AT_rich Low_complexity Low_complexity 1 25 0 1765 149 9 54 chr1 173341406 173341721 -69322632 + AluJb SINE Alu 1 301 -11 1833 163 0 17 chr1 173341728 173342023 -69322330 + AluJb SINE Alu 1 290 -22 23 33 0 0 chr1 173342083 173342113 -69322240 + AT_rich Low_complexity Low_complexity 1 30 0 1948 145 0 37 chr1 173343198 173343522 -69320831 - AluJb SINE Alu 0 312 1 1816 182 13 0 chr1 173344002 173344309 -69320044 + AluJo SINE Alu 1 311 -1 293 254 42 120 chr1 173344322 173344464 -69319889 - L2 LINE L2 -233 3039 2909 2450 77 0 0 chr1 173344697 173344996 -69319357 + AluY SINE Alu 1 299 -12 312 342 90 59 chr1 173345886 173346454 -69317899 - L2 LINE L2 0 3272 2686 2210 110 7 0 chr1 173346987 173347278 -69317075 + AluSx SINE Alu 5 297 -15 917 154 33 125 chr1 173347813 173347903 -69316450 + MER20 DNA MER1_type 1 98 -121 1890 165 7 0 chr1 173347903 173348188 -69316165 + AluJb SINE Alu 6 292 -20 917 154 33 125 chr1 173348188 173348337 -69316016 + MER20 DNA MER1_type 98 218 -1 2097 134 0 0 chr1 173348980 173349278 -69315075 + AluSx SINE Alu 1 298 -14 420 318 55 27 chr1 173349588 173349808 -69314545 - MIR SINE MIR -29 233 8 1948 157 10 13 chr1 173350385 173350691 -69313662 + AluJb SINE Alu 6 310 -2 2304 97 0 3 chr1 173350848 173351147 -69313206 + AluSq SINE Alu 1 298 -15 1988 123 41 0 chr1 173351283 173351576 -69312777 - AluSx SINE Alu -6 306 2 203 311 151 0 chr1 173352606 173352712 -69311641 + L2 LINE L2 3143 3264 -8 382 194 65 79 chr1 173354652 173354754 -69309599 + L1ME4a LINE L1 5984 6086 -35 2313 92 0 3 chr1 173354754 173355049 -69309304 - AluSx SINE Alu -18 294 1 1839 137 30 23 chr1 173355049 173355347 -69309006 - AluSx SINE Alu -11 301 1 382 194 65 79 chr1 173355347 173355382 -69308971 + L1ME4a LINE L1 6084 6120 -1 334 301 57 16 chr1 173355490 173355613 -69308740 - L2 LINE L2 -38 3275 3148 2281 84 0 26 chr1 173355679 173355987 -69308366 - AluSq SINE Alu -13 300 1 310 289 11 22 chr1 173356086 173356176 -69308177 - MIR SINE MIR -153 109 21 210 353 94 29 chr1 173356761 173356931 -69307422 - MER5A DNA MER1_type -7 182 2 1650 163 17 34 chr1 173356983 173357278 -69307075 - AluJo SINE Alu -22 290 1 235 152 15 15 chr1 173357782 173357848 -69306505 + (TA)n Simple_repeat Simple_repeat 1 66 0 2248 102 3 0 chr1 173357849 173358142 -69306211 - AluSx SINE Alu -18 294 1 1546 164 51 3 chr1 173358150 173358443 -69305910 - L1MC1 LINE L1 0 6333 6027 26 50 0 0 chr1 173358659 173358699 -69305654 + AT_rich Low_complexity Low_complexity 1 40 0 829 236 79 10 chr1 173359023 173359226 -69305127 + MIR SINE MIR 36 252 -10 769 294 80 11 chr1 173360174 173360450 -69303903 + L2 LINE L2 2237 2531 -783 703 102 10 0 chr1 173360450 173360548 -69303805 - FLAM_A SINE Alu -15 127 29 270 240 83 50 chr1 173360548 173360644 -69303709 - L1ME2 LINE L1 -33 6131 6029 2295 114 0 0 chr1 173360644 173360942 -69303411 - AluSx SINE Alu -14 298 1 270 240 83 50 chr1 173360942 173360966 -69303387 - L1ME2 LINE L1 -135 6029 6007 2463 205 48 83 chr1 173360967 173361451 -69302902 - L1MEc LINE L1 -3051 3375 2876 2209 116 0 3 chr1 173361451 173361754 -69302599 - AluSc SINE Alu -2 307 6 2463 205 48 83 chr1 173361754 173362510 -69301843 - L1MEc LINE L1 -3550 2876 2207 737 297 48 6 chr1 173362577 173362931 -69301422 - L1MEc LINE L1 -5237 1189 821 28312 101 16 25 chr1 173362993 173366933 -69297420 - L1PA7 LINE L1 0 6469 2502 2272 101 3 0 chr1 173366933 173367230 -69297123 - AluSg SINE Alu -12 298 1 28312 101 16 25 chr1 173367230 173369709 -69294644 - L1PA7 LINE L1 -3967 2502 1 475 259 47 38 chr1 173369818 173370030 -69294323 - L1MEc LINE L1 -5855 561 348 823 163 49 69 chr1 173370289 173370492 -69293861 + MIR SINE MIR 31 229 -33 2324 71 17 7 chr1 173371336 173371633 -69292720 + AluSq SINE Alu 1 300 -13 1051 80 7 0 chr1 173372155 173372293 -69292060 + AluSg/x SINE Alu 164 302 -8 30 59 0 0 chr1 173372556 173372607 -69291746 + AT_rich Low_complexity Low_complexity 1 51 0 216 204 0 56 chr1 173373070 173373124 -69291229 - L2 LINE L2 -12 3301 3251 181 0 0 0 chr1 173373361 173373381 -69290972 + (TTTTG)n Simple_repeat Simple_repeat 1 170 0 1987 123 0 0 chr1 173373381 173373649 -69290704 - AluSq SINE Alu -31 282 15 1888 119 50 0 chr1 173373964 173374242 -69290111 - AluSg SINE Alu -9 301 10 1905 157 3 0 chr1 173375616 173375902 -69288451 + AluJb SINE Alu 3 289 -23 21 0 0 0 chr1 173376080 173376101 -69288252 + AT_rich Low_complexity Low_complexity 1 21 0 1918 150 40 6 chr1 173376299 173376646 -69287707 + L1MA6 LINE L1 5941 6299 -1 189 0 0 0 chr1 173377214 173377235 -69287118 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6937 55 8 0 chr1 173377235 173378462 -69285891 - L1PA7 LINE L1 -13 6141 4908 6439 90 5 11 chr1 173378462 173379402 -69284951 + L1P LINE L1 3921 4855 -1291 5621 36 0 0 chr1 173379545 173380211 -69284142 + L1PA4 LINE L1 5487 6152 -3 1748 91 0 9 chr1 173380582 173380813 -69283540 + AluSq SINE Alu 70 298 -15 24 0 0 0 chr1 173381377 173381401 -69282952 + AT_rich Low_complexity Low_complexity 1 24 0 695 168 0 15 chr1 173383078 173383209 -69281144 - L1MC4 LINE L1 0 8042 7914 672 191 81 86 chr1 173383236 173383446 -69280907 - L1MC4 LINE L1 -122 7920 7712 1405 199 54 7 chr1 173383558 173383834 -69280519 - AluJb SINE Alu -23 289 1 2265 126 0 0 chr1 173384666 173384976 -69279377 + AluSx SINE Alu 3 312 0 2851 117 81 103 chr1 173385240 173385617 -69278736 + MER1A DNA MER1_type 1 364 -2338 2041 117 0 0 chr1 173385617 173385890 -69278463 - AluSq SINE Alu -40 273 1 2851 117 81 103 chr1 173385890 173386053 -69278300 + MER1A DNA MER1_type 364 529 0 1549 185 10 27 chr1 173386307 173386605 -69277748 - AluJo SINE Alu -19 293 1 492 287 59 0 chr1 173386797 173386933 -69277420 + MIR SINE MIR 98 241 -21 897 289 37 0 chr1 173387222 173387440 -69276913 + MIR SINE MIR 37 262 0 27 0 0 0 chr1 173387454 173387481 -69276872 + AT_rich Low_complexity Low_complexity 1 27 0 286 345 26 26 chr1 173387522 173387635 -69276718 - MIR SINE MIR -64 144 32 1639 164 19 29 chr1 173387848 173388159 -69276194 + AluJb SINE Alu 1 308 -4 276 172 0 0 chr1 173388195 173388253 -69276100 + T-rich Low_complexity Low_complexity 1 58 0 194 321 9 55 chr1 173388587 173388696 -69275657 + L2 LINE L2 2267 2370 -944 336 24 0 0 chr1 173389038 173389079 -69275274 + (CA)n Simple_repeat Simple_repeat 1 41 0 196 356 212 8 chr1 173389272 173389404 -69274949 + L2 LINE L2 2600 2758 -556 341 188 38 105 chr1 173390060 173390193 -69274160 - L1MA5 LINE L1 -2 6298 6175 1135 127 0 0 chr1 173390216 173390389 -69273964 - L1MA5 LINE L1 -414 5886 5714 1279 151 50 31 chr1 173390417 173390469 -69273884 - L1MA6 LINE L1 -105 6195 6145 2067 131 6 26 chr1 173390469 173390782 -69273571 + AluSx SINE Alu 1 307 -5 1279 151 50 31 chr1 173390782 173390988 -69273365 - L1MA6 LINE L1 -155 6145 5932 * 2451 136 2 12 chr1 173390977 173391210 -69273143 - L1MA5 LINE L1 -578 5722 5493 1099 174 185 45 chr1 173391210 173391475 -69272878 - AluJo SINE Alu 0 302 1 2451 136 2 12 chr1 173391475 173391645 -69272708 - L1MA5 LINE L1 -807 5493 5323 2089 89 17 0 chr1 173391645 173391938 -69272415 - L1PA13 LINE L1 -5 6158 5861 697 56 0 11 chr1 173391939 173392029 -69272324 + L1PA13 LINE L1 5786 5874 -289 * 824 137 54 6 chr1 173392026 173392194 -69272159 - L1MA5 LINE L1 -814 5332 5157 * 6659 153 59 40 chr1 173392188 173393559 -69270794 - L1MA5 LINE L1 -1252 4894 3498 1440 171 16 8 chr1 173393559 173393804 -69270549 + Tigger3(Golem) DNA MER2_type 2782 3028 -1 778 180 0 0 chr1 173394448 173394570 -69269783 + FLAM_C SINE Alu 1 122 -11 1858 166 0 17 chr1 173395798 173396094 -69268259 + AluJb SINE Alu 1 291 -21 270 81 0 0 chr1 173396159 173396196 -69268157 + (TA)n Simple_repeat Simple_repeat 1 37 0 1757 187 0 3 chr1 173396234 173396523 -69267830 + AluJo SINE Alu 2 289 -23 1467 274 64 32 chr1 173396661 173397300 -69267053 - L2 LINE L2 -160 3153 2502 33 56 0 0 chr1 173397766 173397820 -69266533 + AT_rich Low_complexity Low_complexity 1 54 0 1186 143 12 58 chr1 173397854 173398112 -69266241 + L1MB5 LINE L1 5928 6173 -1 1149 213 65 29 chr1 173398233 173398608 -69265745 - MLT1C LTR MaLR -3 464 6 210 37 0 0 chr1 173398725 173398752 -69265601 + (TG)n Simple_repeat Simple_repeat 2 28 0 1772 161 3 7 chr1 173398752 173399043 -69265310 - AluJb SINE Alu -22 290 1 271 313 38 12 chr1 173400401 173400481 -69263872 - L2 LINE L2 -8 3264 3183 335 258 42 8 chr1 173400717 173400837 -69263516 - MER103 DNA DNA -1 165 42 659 183 15 15 chr1 173400838 173400975 -69263378 - MER5B DNA MER1_type -40 138 2 756 205 99 0 chr1 173400992 173401163 -69263190 + MER5A DNA MER1_type 2 189 0 258 222 19 0 chr1 173401168 173401222 -69263131 - MER5B DNA MER1_type -1 177 123 8814 84 4 10 chr1 173401226 173401730 -69262623 - L1P LINE L1 -2926 3220 2714 2332 67 0 3 chr1 173401730 173402038 -69262315 - AluY SINE Alu 0 307 1 8814 84 4 10 chr1 173402038 173402794 -69261559 - L1P LINE L1 -3432 2714 1967 15243 76 19 0 chr1 173402794 173405694 -69258659 + L1PA7 LINE L1 3228 6143 -11 300 290 70 10 chr1 173405725 173405825 -69258528 + MER5B DNA MER1_type 67 172 -6 205 242 57 129 chr1 173405952 173405986 -69258367 + MIR SINE MIR 64 99 -163 1893 170 3 0 chr1 173405986 173406280 -69258073 - AluJb SINE Alu -17 295 1 205 242 57 129 chr1 173406280 173406369 -69257984 + MIR SINE MIR 99 178 -84 312 306 16 65 chr1 173406430 173406554 -69257799 + MER5A DNA MER1_type 50 167 -22 33 25 0 0 chr1 173406742 173406782 -69257571 + AT_rich Low_complexity Low_complexity 1 40 0 41 58 0 0 chr1 173406848 173406917 -69257436 + AT_rich Low_complexity Low_complexity 1 69 0 294 295 66 0 chr1 173407151 173407274 -69257079 + MIR SINE MIR 45 175 -63 38 0 0 0 chr1 173409550 173409588 -69254765 + AT_rich Low_complexity Low_complexity 1 38 0 323 274 94 0 chr1 173409600 173409706 -69254647 + L2 LINE L2 3154 3269 -3 24 53 0 0 chr1 173410225 173410263 -69254090 + AT_rich Low_complexity Low_complexity 1 38 0 1684 192 0 3 chr1 173411107 173411404 -69252949 - AluJb SINE Alu -16 296 1 187 296 0 0 chr1 173411552 173411596 -69252757 + L2 LINE L2 3214 3257 -15 24 53 0 0 chr1 173412076 173412114 -69252239 + AT_rich Low_complexity Low_complexity 1 38 0 712 188 0 0 chr1 173412114 173412231 -69252122 - FLAM_C SINE Alu -15 118 2 5839 108 51 128 chr1 173412232 173412793 -69251560 - Tigger3b DNA MER2_type -1798 1230 628 1705 173 7 10 chr1 173412793 173413082 -69251271 + AluJo SINE Alu 1 288 -24 5839 108 51 128 chr1 173413082 173413770 -69250583 - Tigger3b DNA MER2_type -2400 628 87 2216 110 3 0 chr1 173413770 173414060 -69250293 - AluSx SINE Alu -19 293 3 5839 108 51 128 chr1 173414060 173414141 -69250212 - Tigger3b DNA MER2_type -2941 87 1 264 286 13 26 chr1 173414144 173414221 -69250132 + HERVL LTR ERVL 1928 2003 -3651 1730 172 20 0 chr1 173414275 173414571 -69249782 - AluJo SINE Alu -10 302 1 1644 190 7 13 chr1 173414618 173414923 -69249430 - AluJo SINE Alu -9 303 1 1032 298 70 5 chr1 173414927 173415313 -69249040 - Charlie7 DNA MER1_type -2041 571 161 781 239 201 34 chr1 173416904 173417411 -69246942 - MLT1G1 LTR MaLR 0 595 4 281 247 155 0 chr1 173417455 173417552 -69246801 - MLT1G1-int LTR MaLR -66 1305 1194 776 168 0 7 chr1 173418119 173418256 -69246097 - FRAM SINE Alu -10 166 31 3564 152 53 24 chr1 173418727 173419423 -69244930 - L1MB3 LINE L1 -46 6137 5422 1728 175 12 59 chr1 173420238 173420458 -69243895 - MLT1B LTR MaLR -4 386 192 2013 124 7 10 chr1 173420458 173420764 -69243589 - AluJb SINE Alu -2 310 6 1728 175 12 59 chr1 173420764 173420948 -69243405 - MLT1B LTR MaLR -198 192 1 767 206 0 0 chr1 173421490 173421636 -69242717 - MLT1B LTR MaLR -244 146 1 832 293 9 9 chr1 173422196 173422421 -69241932 - MIR SINE MIR -32 230 6 368 288 135 37 chr1 173423246 173423461 -69240892 + MIR SINE MIR 23 258 -4 23 0 0 0 chr1 173423535 173423558 -69240795 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 173423613 173423638 -69240715 + AT_rich Low_complexity Low_complexity 1 25 0 2473 53 0 3 chr1 173423747 173424046 -69240307 - AluY SINE Alu -13 298 1 470 73 0 0 chr1 173424241 173424309 -69240044 + HY3 scRNA scRNA 34 101 0 265 324 48 10 chr1 173424735 173424870 -69239483 + MIR SINE MIR 20 143 -65 * 645 283 50 30 chr1 173424860 173425058 -69239295 - MIR SINE MIR -1 261 60 24 0 0 0 chr1 173425389 173425413 -69238940 + AT_rich Low_complexity Low_complexity 1 24 0 2619 45 0 0 chr1 173426524 173426834 -69237519 - AluY SINE Alu -1 310 1 22 35 0 0 chr1 173427056 173427085 -69237268 + AT_rich Low_complexity Low_complexity 1 29 0 309 238 16 0 chr1 173427445 173427508 -69236845 + Tigger5 DNA MER2_type 1 64 -2259 360 156 13 78 chr1 173427519 173427596 -69236757 - Tigger5 DNA MER2_type -7 2316 2245 * 474 163 12 0 chr1 173427589 173427669 -69236684 + Tigger5 DNA MER2_type 2242 2322 -1 610 283 28 17 chr1 173427712 173427892 -69236461 - MIR SINE MIR -4 258 77 1690 157 3 27 chr1 173428102 173428402 -69235951 + AluJb SINE Alu 1 293 -19 31 26 0 0 chr1 173428843 173428881 -69235472 + AT_rich Low_complexity Low_complexity 1 38 0 1021 255 37 15 chr1 173429244 173429570 -69234783 - L1MA9 LINE L1 -33 6279 5947 359 273 135 8 chr1 173429617 173429760 -69234593 - MER20B DNA MER1_type -4 215 55 917 268 23 18 chr1 173430206 173430426 -69233927 + MIR SINE MIR 13 233 -29 1816 155 14 3 chr1 173430436 173430726 -69233627 + AluJb SINE Alu 1 293 -19 2086 129 0 0 chr1 173430805 173431092 -69233261 + AluSx SINE Alu 1 287 -25 2319 97 0 7 chr1 173431103 173431411 -69232942 + AluSg SINE Alu 1 306 -4 759 174 49 7 chr1 173431548 173431692 -69232661 + FRAM SINE Alu 2 151 -15 26 0 0 0 chr1 173431869 173431895 -69232458 + AT_rich Low_complexity Low_complexity 1 26 0 301 103 47 28 chr1 173431924 173432031 -69232322 + (TA)n Simple_repeat Simple_repeat 2 110 0 551 243 9 0 chr1 173432032 173432143 -69232210 - AluJo SINE Alu -69 243 132 24 32 0 0 chr1 173432776 173432807 -69231546 + AT_rich Low_complexity Low_complexity 1 31 0 226 219 31 31 chr1 173433105 173433233 -69231120 + (TA)n Simple_repeat Simple_repeat 1 128 0 839 150 8 23 chr1 173433234 173433367 -69230986 - AluJo SINE Alu -181 131 1 21 0 0 0 chr1 173434244 173434265 -69230088 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 173434414 173434437 -69229916 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1634 165 123 72 chr1 173434548 173434931 -69229422 - Charlie1b DNA MER1_type -2239 522 160 276 77 0 0 chr1 173434931 173434970 -69229383 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2103 104 0 20 chr1 173434973 173435272 -69229081 - AluSq SINE Alu -20 293 1 1634 165 123 72 chr1 173435272 173435381 -69228972 - Charlie1b DNA MER1_type -2602 159 1 824 141 0 30 chr1 173435675 173435810 -69228543 - AluJo SINE Alu -171 131 1 1588 154 142 22 chr1 173435854 173436178 -69228175 + MLT1A1 LTR MaLR 1 363 -2 2242 125 25 11 chr1 173437694 173438061 -69226292 + THE1C LTR MaLR 1 372 -3 1185 195 130 11 chr1 173438138 173438399 -69225954 + MER21B LTR ERV1 19 310 -553 299 241 9 52 chr1 173439388 173439504 -69224849 + A-rich Low_complexity Low_complexity 5 115 0 1478 199 85 45 chr1 173440067 173440545 -69223808 + MER21B LTR ERV1 303 836 -27 1099 185 21 59 chr1 173440570 173440808 -69223545 - MER21B LTR ERV1 -275 588 360 198 0 0 0 chr1 173441233 173441255 -69223098 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2302 184 96 46 chr1 173441410 173442015 -69222338 - L1MB5 LINE L1 -269 5905 5271 458 229 55 0 chr1 173442015 173442124 -69222229 + MER76 LTR ERV 1 115 -573 1401 211 56 33 chr1 173442153 173442580 -69221773 - LTR56 LTR ERV1 0 445 9 1105 257 84 55 chr1 173442590 173443104 -69221249 + MER76 LTR ERV 130 658 -30 4119 217 59 51 chr1 173443107 173443907 -69220446 - L1MB5 LINE L1 -873 5273 4458 2374 69 0 7 chr1 173443907 173444198 -69220155 - AluSg SINE Alu -13 297 9 4119 217 59 51 chr1 173444198 173444640 -69219713 - L1MB5 LINE L1 -1688 4458 4021 260 269 282 25 chr1 173445089 173445334 -69219019 + L3 LINE CR1 1192 1499 -78 557 238 8 0 chr1 173445925 173446051 -69218302 - FLAM_C SINE Alu -6 137 11 2871 116 55 8 chr1 173447191 173447665 -69216688 + L1MA8 LINE L1 5644 6139 -152 1417 192 60 4 chr1 173447665 173447785 -69216568 + AluJo SINE Alu 1 113 -199 207 69 0 0 chr1 173447785 173447814 -69216539 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1417 192 60 4 chr1 173447814 173447959 -69216394 + AluJo SINE Alu 113 281 -31 841 145 0 0 chr1 173447977 173448101 -69216252 + AluJb SINE Alu 1 124 -188 753 168 45 0 chr1 173448123 173448278 -69216075 + L1MA8 LINE L1 6124 6285 -6 233 245 0 0 chr1 173450011 173450064 -69214289 + T-rich Low_complexity Low_complexity 1 53 0 2080 141 0 16 chr1 173450151 173450457 -69213896 - AluSx SINE Alu -11 301 1 1975 224 161 11 chr1 173451793 173451990 -69212363 - L1ME1 LINE L1 -48 6118 5952 984 142 71 0 chr1 173451990 173452145 -69212208 - FAM SINE Alu -9 166 1 1975 224 161 11 chr1 173452145 173452645 -69211708 - L1ME1 LINE L1 -214 5952 5317 275 288 153 0 chr1 173456236 173456347 -69208006 - MIR SINE MIR -77 185 58 776 152 0 23 chr1 173456461 173456593 -69207760 + FLAM_C SINE Alu 1 129 -14 359 297 146 6 chr1 173460399 173460564 -69203789 - MIR SINE MIR -18 244 57 200 356 37 31 chr1 173460976 173461139 -69203214 + L2 LINE L2 1931 2094 -1220 684 241 123 35 chr1 173462271 173462532 -69201821 + L1ME3A LINE L1 5857 6140 -30 185 56 0 56 chr1 173463500 173463536 -69200817 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 767 196 54 0 chr1 173465860 173466008 -69198345 - MLT1D LTR MaLR -349 156 1 233 250 90 10 chr1 173466051 173466151 -69198202 + MIR SINE MIR 104 211 -51 293 414 61 33 chr1 173466628 173467019 -69197334 - L2 LINE L2 -4 3268 2867 6204 93 12 21 chr1 173467111 173468096 -69196257 + L1PA12 LINE L1 5191 6167 -1 2192 117 0 0 chr1 173468098 173468396 -69195957 + AluSx SINE Alu 5 302 -10 32 43 0 0 chr1 173468422 173468468 -69195885 + AT_rich Low_complexity Low_complexity 1 46 0 208 296 148 17 chr1 173468523 173468638 -69195715 - L2 LINE L2 -1 3312 3183 253 62 42 0 chr1 173468704 173468752 -69195601 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 240 316 111 29 chr1 173468895 173469066 -69195287 + MLT1J LTR MaLR 77 261 -250 708 249 21 32 chr1 173469099 173469288 -69195065 + MLT1J2 LTR MaLR 264 450 0 229 279 0 38 chr1 173469368 173469447 -69194906 - L3 LINE CR1 -177 1400 1325 1796 185 0 10 chr1 173469916 173470229 -69194124 - AluJo SINE Alu -2 310 1 203 412 24 0 chr1 173470318 173470403 -69193950 - L3 LINE CR1 -486 1091 1005 339 214 71 0 chr1 173470435 173470505 -69193848 + MIR SINE MIR 66 140 -122 1084 262 84 35 chr1 173470518 173470635 -69193718 - MLT1H LTR MaLR 0 549 439 1614 158 79 4 chr1 173470635 173470913 -69193440 - AluJb SINE Alu -13 299 1 1084 262 84 35 chr1 173470913 173471273 -69193080 - MLT1H LTR MaLR -110 439 1 627 235 76 84 chr1 173471613 173471851 -69192502 + MIR SINE MIR 6 241 -21 352 274 167 27 chr1 173471884 173472070 -69192283 - L3 LINE CR1 -1018 559 348 336 167 17 0 chr1 173472109 173472169 -69192184 + U7 snRNA snRNA 2 62 -1 25 31 0 0 chr1 173472175 173472207 -69192146 + AT_rich Low_complexity Low_complexity 1 32 0 186 259 200 12 chr1 173472221 173472306 -69192047 - L3 LINE CR1 -1288 289 189 1847 158 3 13 chr1 173472310 173472608 -69191745 - AluJb SINE Alu -17 295 1 232 240 19 48 chr1 173472725 173472829 -69191524 - L1ME4a LINE L1 -45 6076 5976 215 125 25 0 chr1 173472835 173472875 -69191478 + CT-rich Low_complexity Low_complexity 4 44 0 600 236 84 30 chr1 173473005 173473268 -69191085 - L1ME4a LINE L1 -289 5832 5556 21 0 0 0 chr1 173473301 173473322 -69191031 + AT_rich Low_complexity Low_complexity 1 21 0 292 325 58 43 chr1 173474180 173474368 -69189985 - MIR SINE MIR -48 214 24 1974 276 165 21 chr1 173476036 173477121 -69187232 - L2 LINE L2 -1109 2205 965 355 293 274 24 chr1 173477133 173477553 -69186800 - L2 LINE L2 -2703 611 87 220 219 203 0 chr1 173477693 173477757 -69186596 + MIR SINE MIR 68 144 -118 205 237 0 0 chr1 173478051 173478089 -69186264 + L2 LINE L2 3230 3267 -5 2372 97 0 0 chr1 173478485 173478785 -69185568 + AluSc SINE Alu 1 300 -9 219 216 0 0 chr1 173479092 173479129 -69185224 + (CCA)n Simple_repeat Simple_repeat 2 38 0 1529 235 29 11 chr1 173479194 173479572 -69184781 - MLT2C1 LTR ERVL 0 397 13 209 182 0 23 chr1 173479572 173479616 -69184737 - MIR SINE MIR -60 202 160 2105 128 3 0 chr1 173480546 173480850 -69183503 - AluSx SINE Alu -2 310 6 1449 226 125 47 chr1 173480921 173481386 -69182967 + MLT1D LTR MaLR 5 505 0 1955 127 0 56 chr1 173481936 173482258 -69182095 - AluSx SINE Alu -8 304 1 26 50 0 0 chr1 173482561 173482601 -69181752 + AT_rich Low_complexity Low_complexity 1 40 0 2106 123 30 33 chr1 173482684 173483018 -69181335 + MER1B DNA MER1_type 1 333 -6 457 295 89 13 chr1 173483076 173483300 -69181053 + L1ME4a LINE L1 5669 5909 -212 31 58 0 0 chr1 173483316 173483368 -69180985 + AT_rich Low_complexity Low_complexity 1 52 0 2068 169 116 28 chr1 173483372 173483785 -69180568 - L1MC4a LINE L1 -120 7688 7214 1840 182 13 76 chr1 173483785 173484180 -69180173 - MLT1A2 LTR MaLR -4 370 1 2068 169 116 28 chr1 173484180 173484309 -69180044 - L1MC4a LINE L1 -594 7214 7098 1970 152 3 0 chr1 173484634 173484930 -69179423 - AluSx SINE Alu -15 297 1 509 292 79 40 chr1 173486695 173486897 -69177456 + MIR SINE MIR 42 251 -11 284 401 0 20 chr1 173486945 173487092 -69177261 - MIR3 SINE MIR -62 146 3 247 230 46 35 chr1 173487940 173488027 -69176326 + CT-rich Low_complexity Low_complexity 3 90 0 434 313 52 15 chr1 173488744 173488878 -69175475 - MIR SINE MIR -117 145 7 726 194 21 94 chr1 173489938 173490129 -69174224 + MER69A DNA AcHobo 1 177 0 480 244 150 0 chr1 173490278 173490405 -69173948 + MER117 DNA MER1_type 1 146 -51 1576 216 49 61 chr1 173490896 173491311 -69173042 + MLT1C LTR MaLR 1 411 -56 3575 139 23 10 chr1 173491311 173491830 -69172523 + MER1A DNA MER1_type 1 526 -1 1576 216 49 61 chr1 173491830 173491887 -69172466 + MLT1C LTR MaLR 411 467 0 2591 64 0 6 chr1 173492341 173492654 -69171699 - AluY SINE Alu 0 311 1 2331 107 0 0 chr1 173493336 173493644 -69170709 + AluSg1 SINE Alu 1 308 -1 2111 127 3 3 chr1 173493665 173493964 -69170389 - AluSx SINE Alu -13 299 1 2285 107 0 0 chr1 173493973 173494272 -69170081 - AluSx SINE Alu -13 299 1 1136 234 147 30 chr1 173494371 173495076 -69169277 + L2 LINE L2 2553 3313 0 2186 112 3 26 chr1 173495883 173496196 -69168157 - AluSx SINE Alu -6 306 1 622 194 108 0 chr1 173496682 173496811 -69167542 + MLT1C LTR MaLR 322 464 -3 2326 219 43 21 chr1 173496812 173497346 -69167007 - L1MEc LINE L1 -5572 824 279 243 237 17 110 chr1 173497346 173497464 -69166889 - MLT1H LTR MaLR -221 328 222 7505 54 17 0 chr1 173497484 173499125 -69165228 + L1PA8 LINE L1 4523 6172 0 282 224 0 66 chr1 173499386 173499462 -69164891 + MER2 DNA MER2_type 8 78 -267 231 228 0 51 chr1 173499491 173499570 -69164783 + L1MC4 LINE L1 6629 6703 -1339 259 290 9 84 chr1 173499803 173499910 -69164443 - MIR3 SINE MIR -21 187 89 1459 148 30 4 chr1 173500494 173500758 -69163595 - L1MA4A LINE L1 0 6303 6033 815 262 117 31 chr1 173501360 173501579 -69162774 + L2 LINE L2 2919 3176 -137 2006 176 11 23 chr1 173501579 173501926 -69162427 + MER2 DNA MER2_type 2 344 0 815 262 117 31 chr1 173501926 173502030 -69162323 + L2 LINE L2 3176 3270 -43 306 325 143 0 chr1 173503402 173503556 -69160797 - MIR SINE MIR -81 181 6 408 271 182 11 chr1 173504300 173504481 -69159872 + L2 LINE L2 3101 3312 -1 4354 173 58 10 chr1 173504708 173505494 -69158859 - LTR1B LTR ERV1 0 826 3 200 296 45 11 chr1 173507154 173507242 -69157111 + L2 LINE L2 3180 3270 -43 259 293 24 0 chr1 173508806 173508888 -69155465 + CT-rich Low_complexity Low_complexity 5 88 0 352 243 144 18 chr1 173509527 173509638 -69154715 - L2 LINE L2 -927 2387 2263 265 269 15 0 chr1 173509668 173509735 -69154618 + L2 LINE L2 3242 3309 -4 * 627 207 0 0 chr1 173509733 173509844 -69154509 - L2 LINE L2 -4 3309 3199 852 183 0 0 chr1 173510049 173510180 -69154173 - FLAM_C SINE Alu -2 131 1 260 365 29 14 chr1 173511386 173511594 -69152759 - L2 LINE L2 -489 2825 2615 1188 155 37 27 chr1 173511806 173512107 -69152246 + THE1C LTR MaLR 1 375 0 26 74 0 0 chr1 173512150 173512204 -69152149 + AT_rich Low_complexity Low_complexity 1 54 0 842 211 25 133 chr1 173512468 173512747 -69151606 + MIR SINE MIR 14 262 0 856 268 0 36 chr1 173512922 173513142 -69151211 - MIR SINE MIR 0 262 51 365 306 82 7 chr1 173513342 173513489 -69150864 - MIR SINE MIR -19 243 86 441 50 0 0 chr1 173513966 173514026 -69150327 + (TG)n Simple_repeat Simple_repeat 2 61 0 801 199 7 0 chr1 173514474 173514615 -69149738 - MLT1E2 LTR MaLR -14 612 471 450 293 76 9 chr1 173515264 173515426 -69148927 - MIR SINE MIR -66 142 16 1561 92 60 5 chr1 173515448 173515666 -69148687 - MER30 DNA MER1_type 0 230 1 812 224 112 5 chr1 173516226 173516440 -69147913 + MIR SINE MIR 2 238 -24 2568 176 105 25 chr1 173516454 173517017 -69147336 + MLT1E2 LTR MaLR 17 624 -2 1664 197 13 3 chr1 173517021 173517326 -69147027 + AluJo SINE Alu 1 308 -4 25 0 0 0 chr1 173518320 173518345 -69146008 + AT_rich Low_complexity Low_complexity 1 25 0 209 293 17 0 chr1 173518516 173518574 -69145779 - MIR3 SINE MIR -3 205 147 415 337 55 11 chr1 173518659 173518840 -69145513 + MIR SINE MIR 21 209 -53 1635 263 65 29 chr1 173518978 173519496 -69144857 + L2 LINE L2 2265 2801 -513 317 150 83 0 chr1 173519496 173519556 -69144797 + MER5C DNA MER1_type 3 67 -257 2573 51 0 0 chr1 173519795 173520089 -69144264 - AluY SINE Alu -17 294 1 3627 219 50 25 chr1 173520119 173520605 -69143748 - L1MC4a LINE L1 0 7808 7336 2160 103 7 3 chr1 173520605 173520895 -69143458 - AluSc SINE Alu -18 291 1 3627 219 50 25 chr1 173520895 173521360 -69142993 - L1MC4a LINE L1 -472 7336 6833 1518 167 93 0 chr1 173522795 173523064 -69141289 - AluJb SINE Alu -18 294 1 332 305 59 25 chr1 173523101 173523219 -69141134 - L2 LINE L2 0 3272 3151 1482 185 43 3 chr1 173523222 173523525 -69140828 - MER33 DNA MER1_type 0 324 10 1294 98 133 15 chr1 173523580 173523783 -69140570 + MER30 DNA MER1_type 4 230 0 289 321 73 7 chr1 173523835 173523972 -69140381 - L2 LINE L2 -212 3060 2915 484 306 41 23 chr1 173525672 173525891 -69138462 - L2 LINE L2 -424 2890 2668 2010 142 0 29 chr1 173527100 173527409 -69136944 - AluSx SINE Alu -12 300 1 273 288 153 0 chr1 173528094 173528205 -69136148 - MIR SINE MIR -77 185 58 804 152 0 23 chr1 173528319 173528451 -69135902 + FLAM_C SINE Alu 1 129 -14 350 297 146 6 chr1 173532257 173532422 -69131931 - MIR SINE MIR -18 244 57 212 350 37 31 chr1 173532834 173532997 -69131356 + L2 LINE L2 1931 2094 -1220 607 241 123 35 chr1 173534129 173534390 -69129963 + L1ME3A LINE L1 5857 6140 -30 185 56 0 56 chr1 173535358 173535394 -69128959 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 831 179 97 15 chr1 173537722 173537918 -69126435 - MER58A DNA MER1_type -10 214 3 186 43 0 0 chr1 173539331 173539354 -69124999 + (GGGAA)n Simple_repeat Simple_repeat 3 25 0 2154 110 27 3 chr1 173539865 173540164 -69124189 + AluSx SINE Alu 1 306 -6 1666 135 15 23 chr1 173540172 173540431 -69123922 + AluJo SINE Alu 41 297 -15 227 245 11 53 chr1 173541273 173541367 -69122986 + L2 LINE L2 2891 2980 -292 217 228 0 38 chr1 173546779 173546858 -69117495 + (CCG)n Simple_repeat Simple_repeat 2 77 0 246 209 179 0 chr1 173548707 173548774 -69115579 + Tigger7 DNA MER2_type 2 80 -653 * 641 178 351 5 chr1 173548771 173548973 -69115380 - Tigger7 DNA MER2_type -386 347 76 * 1951 116 37 9 chr1 173548971 173549128 -69115225 + Tigger7 DNA MER2_type 2243 2394 -193 2093 132 13 0 chr1 173549128 173549432 -69114921 - AluSq SINE Alu -5 308 1 1951 116 37 9 chr1 173549432 173549602 -69114751 + Tigger7 DNA MER2_type 2394 2579 -8 314 43 213 0 chr1 173549806 173549853 -69114500 - MLT1C LTR MaLR 0 390 334 819 194 67 0 chr1 173549853 173550018 -69114335 + AluJo SINE Alu 127 302 -10 1234 162 72 34 chr1 173550023 173550372 -69113981 - MLT1C LTR MaLR -58 332 3 198 268 12 49 chr1 173550384 173550466 -69113887 + MER5A DNA MER1_type 7 85 -104 5245 121 315 35 chr1 173550466 173551786 -69112567 - pTR5 LTR ERV1 -6 2432 743 722 221 127 0 chr1 173551823 173552004 -69112349 + MER20 DNA MER1_type 16 219 0 766 129 0 45 chr1 173552852 173552984 -69111369 + FLAM_A SINE Alu 4 129 -4 1386 158 161 4 chr1 173553808 173554068 -69110285 - AluJb SINE Alu -1 301 1 300 285 106 32 chr1 173554424 173554547 -69109806 + MIR SINE MIR 38 169 -93 307 68 0 0 chr1 173554568 173554612 -69109741 + MADE1 DNA Mariner 36 79 -1 1997 119 35 3 chr1 173554800 173555086 -69109267 + AluSc SINE Alu 1 295 -14 2341 88 0 7 chr1 173555379 173555685 -69108668 - AluSc SINE Alu -5 304 1 454 264 67 34 chr1 173556349 173556527 -69107826 + MLT1J LTR MaLR 274 457 -54 250 290 0 43 chr1 173556921 173556990 -69107363 - L2 LINE L2 -12 3260 3195 766 294 100 13 chr1 173557364 173557674 -69106679 + L2 LINE L2 2819 3155 -158 2080 150 16 16 chr1 173557755 173558129 -69106224 - THE1C LTR MaLR 0 375 2 236 326 12 0 chr1 173558632 173558718 -69105635 + MLT1K LTR MaLR 184 270 -318 376 246 126 56 chr1 173558754 173558969 -69105384 + MLT1K LTR MaLR 353 582 -6 2104 133 0 10 chr1 173559288 173559582 -69104771 + AluSx SINE Alu 1 291 -21 1793 157 4 0 chr1 173559593 173559897 -69104456 - AluJb SINE Alu 0 305 1 2176 97 7 0 chr1 173560476 173560789 -69103564 + AluSp SINE Alu 1 313 0 857 111 7 7 chr1 173561230 173561365 -69102988 - L1PB1 LINE L1 -2 6149 6015 218 328 0 0 chr1 173562866 173562924 -69101429 - L2 LINE L2 -1 3312 3255 273 280 200 13 chr1 173563014 173563239 -69101114 - L2 LINE L2 -182 3090 2824 867 155 0 0 chr1 173563243 173563372 -69100981 + FLAM_A SINE Alu 5 133 0 21 36 0 0 chr1 173563458 173563486 -69100867 + AT_rich Low_complexity Low_complexity 1 28 0 210 217 58 108 chr1 173563631 173563751 -69100602 + L3b LINE CR1 1268 1381 -202 703 179 81 0 chr1 173564718 173564841 -69099512 + FLAM_A SINE Alu 6 138 -4 248 325 26 26 chr1 173564979 173565093 -69099260 + MER117 DNA MER1_type 30 143 -54 198 319 111 52 chr1 173566001 173566136 -69098217 + MIR3 SINE MIR 12 154 -54 266 250 36 0 chr1 173566706 173566790 -69097563 - Charlie2 DNA MER1_type 0 2862 2776 1207 161 25 8 chr1 173566821 173567064 -69097289 - LTR54 LTR ERV1 0 510 264 977 187 0 0 chr1 173567068 173567234 -69097119 + FRAM SINE Alu 1 40 0 991 179 26 10 chr1 173567800 173567995 -69096358 - LTR54 LTR ERV1 -312 198 1 771 223 43 49 chr1 173568308 173568613 -69095740 - Charlie2 DNA MER1_type -2558 304 2 1679 204 57 17 chr1 173569028 173569488 -69094865 + MER31A LTR ERV1 8 485 0 1735 162 43 45 chr1 173569585 173570005 -69094348 - MSTB1 LTR MaLR -13 419 1 772 232 37 0 chr1 173570485 173570649 -69093704 - FAM SINE Alu -1 174 5 295 155 83 16 chr1 173570657 173570746 -69093607 - L1MB7 LINE L1 0 6178 6090 1492 139 93 15 chr1 173570764 173571207 -69093146 - LTR54 LTR ERV1 -2 496 1 888 141 47 21 chr1 173571263 173571454 -69092899 - LTR48 LTR ERV1 0 787 592 1495 181 92 56 chr1 173571499 173571964 -69092389 - LTR48 LTR ERV1 -305 482 1 184 180 0 120 chr1 173572145 173572195 -69092158 + L2 LINE L2 3228 3271 -1 21 57 0 0 chr1 173573204 173573239 -69091114 + AT_rich Low_complexity Low_complexity 1 35 0 1383 212 10 10 chr1 173573272 173573560 -69090793 + AluJo SINE Alu 1 288 -24 314 155 134 21 chr1 173573681 173573778 -69090575 + MER53 DNA DNA 2 109 -80 250 282 295 0 chr1 173573889 173574038 -69090315 + L2 LINE L2 2297 2489 -825 265 350 12 49 chr1 173574339 173574502 -69089851 + L2 LINE L2 2667 2823 -491 214 196 130 0 chr1 173574576 173574622 -69089731 + L2 LINE L2 3005 3056 -257 1189 263 78 20 chr1 173574707 173575254 -69089099 + L2 LINE L2 2725 3313 0 240 208 139 14 chr1 173575296 173575368 -69088985 + L2 LINE L2 3223 3303 -10 768 253 59 28 chr1 173575693 173575982 -69088371 - MER46C DNA MER2_type -1 337 40 411 136 0 0 chr1 173576354 173576420 -69087933 - MER58 DNA MER1_type 0 2420 2355 465 275 169 29 chr1 173576892 173577099 -69087254 - MIR SINE MIR -5 257 22 206 32 32 0 chr1 173577129 173577160 -69087193 + (TA)n Simple_repeat Simple_repeat 2 33 0 1456 188 19 48 chr1 173577944 173578258 -69086095 - AluJo SINE Alu -6 306 2 273 276 26 0 chr1 173578801 173578877 -69085476 + CT-rich Low_complexity Low_complexity 1 78 0 1708 144 63 7 chr1 173578886 173579156 -69085197 - AluSx SINE Alu -16 296 12 375 207 89 30 chr1 173579487 173579622 -69084731 - HAL1b LINE L1 -441 907 765 632 275 197 0 chr1 173581141 173581359 -69082994 + MIR SINE MIR 2 262 0 21 0 0 0 chr1 173581794 173581815 -69082538 + AT_rich Low_complexity Low_complexity 1 21 0 2121 139 3 0 chr1 173582165 173582460 -69081893 + AluSx SINE Alu 1 296 -16 22 70 0 0 chr1 173582557 173582600 -69081753 + AT_rich Low_complexity Low_complexity 1 43 0 1271 122 84 0 chr1 173583108 173583345 -69081008 - Tigger2 DNA MER2_type 0 2718 2462 4170 138 24 22 chr1 173583404 173583482 -69080871 - Tigger2 DNA MER2_type -1974 744 668 2250 95 0 7 chr1 173583482 173583788 -69080565 - AluY SINE Alu -7 304 1 4170 138 24 22 chr1 173583788 173584395 -69079958 - Tigger2 DNA MER2_type -2050 668 54 2051 131 3 23 chr1 173584395 173584700 -69079653 + AluJb SINE Alu 1 299 -13 4170 138 24 22 chr1 173584700 173584755 -69079598 - Tigger2 DNA MER2_type -2664 54 1 807 247 55 22 chr1 173585410 173585681 -69078672 - MLT1J LTR MaLR -7 504 225 2011 148 7 3 chr1 173586035 173586332 -69078021 + AluJb SINE Alu 1 298 -14 516 296 45 56 chr1 173586491 173586734 -69077619 + L1ME4a LINE L1 5586 5825 -296 2109 143 0 3 chr1 173586734 173587042 -69077311 + AluJb SINE Alu 1 307 -5 516 296 45 56 chr1 173587042 173587153 -69077200 + L1ME4a LINE L1 5825 5936 -185 1454 141 18 84 chr1 173587173 173587380 -69076973 - L1MA6 LINE L1 0 6300 6122 2459 59 0 37 chr1 173587380 173587703 -69076650 - AluY SINE Alu 0 311 1 1454 141 18 84 chr1 173587703 173587828 -69076525 - L1MA6 LINE L1 -178 6122 5990 2173 274 7 14 chr1 173587830 173588403 -69075950 + L1P4 LINE L1 44 612 -6175 15168 196 27 26 chr1 173588671 173589272 -69075081 + L1P4 LINE L1 1323 1922 -4895 3773 92 23 3 chr1 173589272 173589840 -69074513 - L1MA2 LINE L1 0 6304 5726 15168 196 27 26 chr1 173589840 173589866 -69074487 + L1P4 LINE L1 1922 1946 -4871 2169 127 0 3 chr1 173589866 173590165 -69074188 + AluSq SINE Alu 1 298 -15 15168 196 27 26 chr1 173590165 173594468 -69069885 + L1P4 LINE L1 1946 6330 -487 207 0 0 0 chr1 173594472 173594495 -69069858 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 890 197 10 52 chr1 173596189 173596342 -69068011 + MER5A DNA MER1_type 5 150 -39 2376 52 31 0 chr1 173596342 173596630 -69067723 - AluY SINE Alu -14 297 1 890 197 10 52 chr1 173596630 173596669 -69067684 + MER5A DNA MER1_type 150 189 0 1456 213 87 65 chr1 173596671 173597163 -69067190 + MLT1D LTR MaLR 3 505 0 325 251 8 83 chr1 173597755 173597939 -69066414 - MIR SINE MIR -58 204 39 222 306 24 24 chr1 173598047 173598132 -69066221 - L2 LINE L2 -8 3264 3180 22 35 0 0 chr1 173600064 173600093 -69064260 + AT_rich Low_complexity Low_complexity 1 29 0 1679 170 16 39 chr1 173600178 173600353 -69064000 - AluJb SINE Alu -8 304 137 1947 109 0 0 chr1 173600353 173600639 -69063714 - AluSc SINE Alu 0 309 34 1679 170 16 39 chr1 173600639 173600769 -69063584 - AluJb SINE Alu -175 137 6 1760 71 0 13 chr1 173600944 173601168 -69063185 + AluY SINE Alu 89 309 -2 25 0 0 0 chr1 173601305 173601330 -69063023 + AT_rich Low_complexity Low_complexity 1 25 0 389 267 133 0 chr1 173602447 173602567 -69061786 - L3 LINE CR1 -12 1565 1430 180 354 15 0 chr1 173602845 173602910 -69061443 - L2 LINE L2 -217 3055 2990 319 303 10 133 chr1 173604203 173604398 -69059955 + MIR3 SINE MIR 5 175 -33 842 136 0 0 chr1 173604521 173604639 -69059714 - AluJb SINE Alu -194 118 1 1144 253 198 42 chr1 173604698 173605538 -69058815 + L2 LINE L2 2135 3151 -162 1076 187 34 5 chr1 173605538 173605747 -69058606 - MER20 DNA MER1_type 0 219 5 1144 253 198 42 chr1 173605747 173605939 -69058414 + L2 LINE L2 3151 3312 -1 501 324 81 37 chr1 173605944 173606379 -69057974 + L2 LINE L2 2842 3295 -18 192 77 0 0 chr1 173606465 173606491 -69057862 + (A)n Simple_repeat Simple_repeat 1 26 0 235 146 18 18 chr1 173606799 173606854 -69057499 + LTR49 LTR ERV1 469 523 -72 2003 111 0 78 chr1 173607241 173607575 -69056778 + AluSx SINE Alu 1 308 -4 481 72 24 12 chr1 173608080 173608163 -69056190 + (TTTTA)n Simple_repeat Simple_repeat 1 84 0 42033 36 5 3 chr1 173608163 173614279 -69050074 - L1PA4 LINE L1 -24 6131 1 508 186 21 0 chr1 173614281 173614378 -69049975 - FLAM_A SINE Alu -9 133 35 1623 170 3 55 chr1 173614680 173615009 -69049344 - AluJo SINE Alu 0 312 1 376 326 147 11 chr1 173615041 173615225 -69049128 - MIR SINE MIR -14 248 40 188 172 16 125 chr1 173615347 173615411 -69048942 - L2 LINE L2 0 3272 3216 863 240 30 81 chr1 173616054 173616432 -69047921 - Charlie8 DNA MER1_type -65 276 74 600 191 9 0 chr1 173616432 173616542 -69047811 + MER81 DNA DNA 4 114 0 863 240 30 81 chr1 173616542 173616613 -69047740 - Charlie8 DNA MER1_type -267 74 1 2332 108 0 6 chr1 173616655 173616970 -69047383 - AluSq SINE Alu 0 313 1 192 77 0 0 chr1 173616982 173617008 -69047345 + (T)n Simple_repeat Simple_repeat 1 26 0 1024 136 14 0 chr1 173618601 173618748 -69045605 - FAM SINE Alu -16 169 21 1272 210 55 21 chr1 173618976 173619304 -69045049 - MLT1F1 LTR MaLR -50 517 179 227 289 29 58 chr1 173619555 173619659 -69044694 - MIR3 SINE MIR -5 203 103 1392 137 17 37 chr1 173619983 173620224 -69044129 - MER46A DNA MER2_type 0 236 1 248 303 64 18 chr1 173620236 173620345 -69044008 + MIR SINE MIR 91 204 -58 21 57 0 0 chr1 173620367 173620402 -69043951 + AT_rich Low_complexity Low_complexity 1 35 0 522 292 53 29 chr1 173620548 173620719 -69043634 + MER5A DNA MER1_type 14 188 -1 418 138 84 84 chr1 173620812 173620979 -69043374 - Charlie7 DNA MER1_type -28 2584 2418 276 278 19 46 chr1 173620946 173621054 -69043299 - Charlie7 DNA MER1_type -2507 105 1 * 197 313 25 25 chr1 173621094 173621174 -69043179 - L2 LINE L2 -2 3270 3191 444 275 63 0 chr1 173621980 173622122 -69042231 + MIR SINE MIR 99 249 -13 1875 143 0 14 chr1 173622257 173622544 -69041809 - AluJb SINE Alu -14 298 16 216 0 0 0 chr1 173623050 173623074 -69041279 + (A)n Simple_repeat Simple_repeat 1 24 0 189 305 51 0 chr1 173623247 173623306 -69041047 - MIR3 SINE MIR 0 208 147 2249 88 3 7 chr1 173623711 173624005 -69040348 - AluSc SINE Alu -16 293 1 2179 91 3 70 chr1 173624508 173624839 -69039514 + AluSq SINE Alu 1 309 -4 230 276 0 0 chr1 173624972 173625030 -69039323 + L2 LINE L2 1862 1919 -1395 266 316 79 0 chr1 173625285 173625424 -69038929 - MER117 DNA MER1_type -47 150 1 225 295 26 26 chr1 173625490 173625568 -69038785 + L2 LINE L2 3231 3308 -5 770 148 23 0 chr1 173626628 173626756 -69037597 - FLAM_C SINE Alu -2 131 1 1194 210 0 0 chr1 173626757 173626971 -69037382 - MER58A DNA MER1_type -8 216 3 769 139 90 0 chr1 173627266 173627388 -69036965 - FRAM SINE Alu -9 167 35 1788 181 0 0 chr1 173627399 173627692 -69036661 - AluJo SINE Alu -15 297 5 825 261 137 0 chr1 173628297 173628508 -69035845 + MIR SINE MIR 2 241 -21 24 32 0 0 chr1 173628731 173628762 -69035591 + AT_rich Low_complexity Low_complexity 1 31 0 1910 151 13 3 chr1 173630076 173630381 -69033972 + AluJb SINE Alu 1 308 -4 967 260 79 77 chr1 173630463 173630993 -69033360 - MLT1H LTR MaLR 0 549 19 27 29 0 0 chr1 173631062 173631096 -69033257 + AT_rich Low_complexity Low_complexity 1 34 0 438 266 86 61 chr1 173631199 173631593 -69032760 - L1ME LINE L1 -389 5773 5370 562 319 41 24 chr1 173631755 173632342 -69032011 - L1ME LINE L1 -925 5221 4625 2832 242 105 3 chr1 173632371 173633322 -69031031 - L2 LINE L2 -192 3121 2079 1277 151 72 75 chr1 173633354 173633514 -69030839 + LTR1 LTR ERV1 32 191 -594 2907 13 0 0 chr1 173633514 173633832 -69030521 + AluYb8 SINE Alu 1 318 0 1277 151 72 75 chr1 173633832 173634003 -69030350 + LTR1 LTR ERV1 191 362 -423 279 0 0 0 chr1 173634089 173634120 -69030233 + (CA)n Simple_repeat Simple_repeat 1 31 0 278 235 41 31 chr1 173634131 173634229 -69030124 - L2 LINE L2 -1202 2112 2014 261 343 29 9 chr1 173635874 173635979 -69028374 - L2 LINE L2 0 3313 3207 379 305 45 23 chr1 173636563 173636623 -69027730 - MIR SINE MIR -42 220 163 2232 176 31 19 chr1 173636623 173636673 -69027680 - MSTB LTR MaLR 0 426 378 2691 27 0 0 chr1 173636673 173636974 -69027379 - AluY SINE Alu -10 301 1 2232 176 31 19 chr1 173636974 173637344 -69027009 - MSTB LTR MaLR -48 378 1 379 305 45 23 chr1 173637344 173637460 -69026893 - MIR SINE MIR -99 163 40 336 278 82 10 chr1 173637518 173637615 -69026738 + MER5A DNA MER1_type 50 153 -36 21 57 0 0 chr1 173638859 173638894 -69025459 + AT_rich Low_complexity Low_complexity 1 35 0 679 228 44 103 chr1 173640798 173641070 -69023283 + MIR SINE MIR 7 262 0 423 179 13 0 chr1 173642837 173642915 -69021438 - MER7A DNA MER2_type -15 331 253 395 163 244 0 chr1 173642951 173643037 -69021316 - MER7A DNA MER2_type -239 107 3 195 42 0 0 chr1 173643072 173643096 -69021257 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2134 104 0 11 chr1 173643101 173643380 -69020973 - AluSq SINE Alu -36 277 2 505 108 0 14 chr1 173643519 173643593 -69020760 + AluSg/x SINE Alu 85 157 -153 445 206 37 15 chr1 173643757 173643893 -69020460 + L1ME4a LINE L1 5961 6099 -22 24 0 0 0 chr1 173644140 173644164 -69020189 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr1 173644603 173644640 -69019713 + AT_rich Low_complexity Low_complexity 1 37 0 186 298 97 61 chr1 173644982 173645096 -69019257 - L2 LINE L2 -185 3087 2970 1096 235 97 59 chr1 173645110 173645565 -69018788 - MLT1H LTR MaLR -6 543 72 758 11 0 11 chr1 173645848 173645940 -69018413 + (TATTG)n Simple_repeat Simple_repeat 2 92 0 2108 115 3 3 chr1 173645941 173646229 -69018124 - AluSx SINE Alu -24 288 1 754 264 51 31 chr1 173646358 173646612 -69017741 + MIR SINE MIR 2 260 -2 284 327 59 20 chr1 173646957 173647058 -69017295 - L2 LINE L2 -8 3305 3201 1679 189 34 0 chr1 173648504 173648795 -69015558 - AluJo SINE Alu -11 301 1 212 261 72 0 chr1 173648924 173648993 -69015360 - MIR SINE MIR -112 150 77 676 284 127 7 chr1 173649073 173649296 -69015057 + MIR SINE MIR 3 250 -12 226 162 0 0 chr1 173649696 173649733 -69014620 + MLT1B LTR MaLR 352 388 -2 21 57 0 0 chr1 173652112 173652147 -69012206 + AT_rich Low_complexity Low_complexity 1 35 0 248 218 89 10 chr1 173652667 173652768 -69011585 - L1ME LINE L1 -297 5824 5716 455 337 78 3 chr1 173652955 173653302 -69011051 + HERVL LTR ERVL 3894 4266 -1388 368 139 0 13 chr1 173653863 173653942 -69010411 - L1MB3 LINE L1 0 6183 6106 337 309 129 0 chr1 173655409 173655587 -69008766 - MIR SINE MIR 0 262 62 1194 191 154 35 chr1 173657227 173657630 -69006723 - MLT1D LTR MaLR 0 505 55 599 255 7 13 chr1 173708089 173708242 -68956111 - MIR SINE MIR 0 262 111 238 329 12 12 chr1 173709156 173709238 -68955115 - MER91A DNA MER1_type -111 85 4 1296 25 44 0 chr1 173710196 173710354 -68953999 + L1PA6 LINE L1 5989 6153 -1 185 245 41 20 chr1 173710462 173710511 -68953842 + L2 LINE L2 3141 3190 -82 2122 121 7 0 chr1 173710951 173711240 -68953113 - AluSx SINE Alu -21 291 1 284 299 31 0 chr1 173712008 173712105 -68952248 + L2 LINE L2 3173 3272 0 1707 182 57 0 chr1 173713429 173713709 -68950644 - AluJo SINE Alu -16 296 1 2008 125 4 0 chr1 173714747 173715051 -68949302 + AluSx SINE Alu 5 309 0 285 263 153 8 chr1 173715213 173715331 -68949022 + L2 LINE L2 3173 3307 -6 216 97 0 0 chr1 173715398 173715429 -68948924 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 211 289 0 0 chr1 173715591 173715643 -68948710 + L2 LINE L2 3213 3264 -8 203 302 138 52 chr1 173717749 173717865 -68946488 - L2 LINE L2 0 3272 3147 282 289 22 67 chr1 173718150 173718285 -68946068 + MER91B DNA MER1_type 1 129 -61 502 209 9 19 chr1 173718300 173718405 -68945948 + MER91B DNA MER1_type 87 190 0 2256 122 0 7 chr1 173718606 173718910 -68945443 - AluSx SINE Alu -10 302 1 180 208 21 42 chr1 173719168 173719216 -68945137 - L3b LINE CR1 -246 1337 1291 230 294 39 33 chr1 173719234 173719387 -68944966 + MIR SINE MIR 102 255 -7 207 247 0 49 chr1 173719388 173719469 -68944884 + CT-rich Low_complexity Low_complexity 4 80 0 1279 205 104 101 chr1 173720095 173720511 -68943842 - L1ME1 LINE L1 -5 6161 5741 7998 12 0 0 chr1 173720511 173721201 -68943152 - L1PA3 LINE L1 -1 6154 5473 2764 17 0 0 chr1 173721201 173721499 -68942854 - AluY SINE Alu -13 298 1 7998 12 0 0 chr1 173721499 173722141 -68942212 - L1PA3 LINE L1 -681 5474 4833 1279 205 104 101 chr1 173722141 173722299 -68942054 - L1ME1 LINE L1 -425 5741 5585 242 300 12 0 chr1 173722854 173722934 -68941419 + MIR SINE MIR 68 148 -60 293 262 19 78 chr1 173723390 173723493 -68940860 + MER5B DNA MER1_type 74 170 -8 180 152 0 0 chr1 173724242 173724275 -68940078 + (TAG)n Simple_repeat Simple_repeat 3 35 0 298 261 122 0 chr1 173724322 173724437 -68939916 + MIR SINE MIR 48 176 -86 702 223 8 0 chr1 173724808 173724938 -68939415 + MER58B DNA MER1_type 210 340 -1 668 333 160 8 chr1 173725599 173726092 -68938261 + L3 LINE CR1 999 1566 -11 2537 77 0 3 chr1 173726230 173726542 -68937811 - AluY SINE Alu 0 311 1 223 290 56 16 chr1 173726738 173726863 -68937490 + MIR SINE MIR 64 192 -58 2177 117 3 16 chr1 173728217 173728524 -68935829 - AluSx SINE Alu -9 303 1 235 143 0 0 chr1 173728880 173728915 -68935438 + MER5B DNA MER1_type 1 35 -143 1855 137 0 19 chr1 173728959 173729230 -68935123 + AluSx SINE Alu 1 266 -46 264 32 0 0 chr1 173729236 173729267 -68935086 + MER5B DNA MER1_type 137 167 -11 329 288 71 57 chr1 173730825 173731037 -68933316 + L1ME4a LINE L1 5442 5656 -2152 225 315 0 0 chr1 173731055 173731144 -68933209 - L1MC4 LINE L1 -1340 6702 6614 * 229 192 55 14 chr1 173731091 173731164 -68933189 + L1MCa LINE L1 1996 2071 -4355 296 269 66 50 chr1 173731190 173731372 -68932981 + L1ME4a LINE L1 5744 5928 -193 1082 176 39 0 chr1 173731717 173731899 -68932454 - MER5A DNA MER1_type 0 189 1 2756 131 58 2 chr1 173731902 173732313 -68932040 + MER57B LTR ERV1 1 434 0 4285 141 28 0 chr1 173732313 173732952 -68931401 + MER57B-int LTR ERV1 1 657 -6880 2156 84 50 3 chr1 173732961 173733258 -68931095 - AluY SINE Alu 0 311 1 3493 139 41 13 chr1 173733286 173734027 -68930326 + MER57B-int LTR ERV1 288 1136 -4810 2160 147 67 6 chr1 173734022 173734382 -68929971 + MER57B-int LTR ERV1 1990 2371 -5166 * 5766 172 97 35 chr1 173734381 173736174 -68928179 + MER57B-int LTR ERV1 2042 5205 -2231 13446 87 98 61 chr1 173736177 173738327 -68926026 + MER57B-int LTR ERV1 5307 7535 -2 260 27 27 0 chr1 173738327 173738364 -68925989 + (TTA)n Simple_repeat Simple_repeat 3 40 0 6636 55 5 0 chr1 173738364 173739171 -68925182 - L1PA6 LINE L1 -18 6136 5326 3135 121 7 2 chr1 173739185 173739615 -68924738 + MER57B LTR ERV1 1 432 -2 209 182 0 0 chr1 173739910 173739943 -68924410 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 255 224 0 0 chr1 173739958 173740034 -68924319 + GA-rich Low_complexity Low_complexity 1 76 0 321 335 58 0 chr1 173741183 173741338 -68923015 - MIR3 SINE MIR -3 205 42 693 237 87 22 chr1 173742149 173742395 -68921958 + MIR SINE MIR 8 262 0 457 85 17 0 chr1 173742899 173742958 -68921395 - U7 snRNA snRNA -2 61 2 235 238 44 155 chr1 173743738 173743797 -68920556 - MIR3 SINE MIR -7 201 137 1221 189 18 5 chr1 173743797 173744014 -68920339 - MER58A DNA MER1_type -2 222 3 235 238 44 155 chr1 173744014 173744135 -68920218 - MIR3 SINE MIR -71 137 41 259 341 94 0 chr1 173744205 173744375 -68919978 - L2 LINE L2 0 3272 3087 394 22 0 0 chr1 173747860 173747906 -68916447 - MADE1 DNA Mariner -34 46 1 2315 133 33 28 chr1 173748344 173748706 -68915647 + THE1B LTR MaLR 1 364 0 216 0 0 0 chr1 173749037 173749061 -68915292 + (T)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 173749441 173749464 -68914889 + (T)n Simple_repeat Simple_repeat 1 23 0 223 333 132 8 chr1 173751134 173751263 -68913090 + MIR3 SINE MIR 63 207 -1 1590 194 31 10 chr1 173751300 173751589 -68912764 - AluJo SINE Alu -17 295 1 2091 122 7 10 chr1 173751951 173752254 -68912099 - AluSg SINE Alu -8 302 1 524 235 17 0 chr1 173752474 173752589 -68911764 + L2 LINE L2 3154 3270 -2 320 226 0 108 chr1 173752592 173752685 -68911668 + MIR SINE MIR 92 174 -88 202 182 0 0 chr1 173752976 173753009 -68911344 + polypurine Low_complexity Low_complexity 2 34 0 2242 89 7 3 chr1 173753208 173753501 -68910852 + AluSg SINE Alu 1 294 -16 202 294 15 0 chr1 173753880 173753948 -68910405 - MIR SINE MIR -98 164 96 874 198 82 26 chr1 173754937 173755169 -68909184 - MIR SINE MIR -17 245 1 1714 169 19 26 chr1 173755912 173756225 -68908128 + AluJo SINE Alu 1 311 -1 11666 50 11 1 chr1 173756346 173758503 -68905850 - L1PA6 LINE L1 0 6154 3983 199 278 14 14 chr1 173759356 173759428 -68904925 + MIR SINE MIR 189 260 -2 444 247 8 86 chr1 173759849 173760043 -68904310 - MIR3 SINE MIR -23 185 6 * 1697 307 120 32 chr1 173760030 173760913 -68903440 - L3 LINE CR1 -5 1572 612 370 335 70 22 chr1 173761541 173761726 -68902627 - MIR SINE MIR -5 257 64 997 186 0 21 chr1 173761864 173762052 -68902301 - L1MD2 LINE L1 -41 6318 6135 2355 82 0 3 chr1 173762092 173762386 -68901967 - AluSq SINE Alu -18 295 3 335 245 21 21 chr1 173762440 173762534 -68901819 - MIR3 SINE MIR -6 202 109 22 35 0 0 chr1 173762617 173762646 -68901707 + AT_rich Low_complexity Low_complexity 1 29 0 661 305 121 91 chr1 173763157 173763442 -68900911 + L3 LINE CR1 343 618 -959 252 59 0 0 chr1 173763442 173763476 -68900877 + (TG)n Simple_repeat Simple_repeat 2 35 0 661 305 121 91 chr1 173763476 173764306 -68900047 + L3 LINE CR1 618 1491 -86 311 294 78 10 chr1 173764415 173764517 -68899836 + L2 LINE L2 3139 3247 -25 196 364 13 0 chr1 173764551 173764628 -68899725 + L3 LINE CR1 1495 1572 -5 1224 145 16 5 chr1 173764725 173764911 -68899442 - MER5A DNA MER1_type 0 189 2 377 280 166 6 chr1 173764931 173764963 -68899390 - MER5A DNA MER1_type -1 188 162 2330 74 3 35 chr1 173764963 173765273 -68899080 + AluSq SINE Alu 1 300 -13 377 280 166 6 chr1 173765273 173765397 -68898956 - MER5A DNA MER1_type -27 162 7 223 293 61 77 chr1 173766890 173767071 -68897282 - MIR SINE MIR -1 261 84 819 178 31 8 chr1 173767971 173768100 -68896253 + FLAM_C SINE Alu 2 133 -10 313 238 88 12 chr1 173768848 173768928 -68895425 + L2 LINE L2 3145 3230 -42 335 320 109 0 chr1 173768928 173769084 -68895269 + MIR3 SINE MIR 34 206 -2 185 160 0 20 chr1 173769205 173769255 -68895098 + CT-rich Low_complexity Low_complexity 2 50 0 349 167 30 0 chr1 173769271 173769337 -68895016 + Charlie5 DNA MER1_type 2517 2584 -28 282 235 0 0 chr1 173770127 173770208 -68894145 + (CA)n Simple_repeat Simple_repeat 2 82 0 1418 171 96 0 chr1 173770361 173770642 -68893711 - MER33 DNA MER1_type -15 309 2 182 324 55 35 chr1 173771787 173771932 -68892421 - L3b LINE CR1 -328 1255 1108 705 242 10 111 chr1 173771976 173772274 -68892079 + L2 LINE L2 3046 3313 0 201 362 0 21 chr1 173772768 173772862 -68891491 + L2 LINE L2 3180 3271 -1 199 349 24 0 chr1 173773047 173773130 -68891223 - L2 LINE L2 0 3272 3188 235 301 82 0 chr1 173773180 173773253 -68891100 + L2 LINE L2 3189 3267 -5 27 29 0 0 chr1 173773886 173773920 -68890433 + AT_rich Low_complexity Low_complexity 1 34 0 424 298 52 43 chr1 173774189 173774535 -68889818 + L1MC4a LINE L1 4838 5186 -960 923 313 62 16 chr1 173774812 173775372 -68888981 + L1MC4a LINE L1 5318 5903 -1905 224 289 0 0 chr1 173775574 173775650 -68888703 + (TA)n Simple_repeat Simple_repeat 2 77 0 345 226 98 29 chr1 173775812 173775914 -68888439 + MIR3 SINE MIR 82 190 -18 540 340 87 5 chr1 173776996 173777202 -68887151 - MIR SINE MIR -11 251 29 904 181 102 0 chr1 173777466 173777643 -68886710 - MER58A DNA MER1_type 0 224 30 394 314 57 0 chr1 173777784 173777924 -68886429 + L2 LINE L2 3165 3312 -1 875 175 16 10 chr1 173777966 173778276 -68886077 + GA-rich Low_complexity Low_complexity 1 311 0 1098 172 12 0 chr1 173778746 173778915 -68885438 - FAM SINE Alu -4 171 1 1294 120 10 10 chr1 173779271 173779471 -68884882 - L1PA13 LINE L1 0 6163 5964 500 264 163 6 chr1 173780015 173780193 -68884160 - L3 LINE CR1 -257 1320 1115 403 297 70 24 chr1 173780201 173780418 -68883935 + MIR SINE MIR 14 236 -26 275 200 109 0 chr1 173780659 173780714 -68883639 + L2 LINE L2 3237 3297 -16 2103 167 91 90 chr1 173781111 173782049 -68882304 + L1PA16 LINE L1 5225 6162 -4 214 381 82 14 chr1 173782480 173782627 -68881726 - L2 LINE L2 -1 3271 3115 236 272 74 62 chr1 173782719 173782800 -68881553 - L2 LINE L2 -198 3074 2993 204 67 0 0 chr1 173783576 173783606 -68880747 + (TC)n Simple_repeat Simple_repeat 2 31 0 267 93 0 0 chr1 173783606 173783649 -68880704 + (CA)n Simple_repeat Simple_repeat 1 43 0 210 225 113 42 chr1 173784227 173784298 -68880055 + L2 LINE L2 3213 3288 -25 620 223 149 34 chr1 173785246 173785419 -68878934 + MIR SINE MIR 6 198 -64 507 162 0 61 chr1 173785419 173785518 -68878835 + MER5A DNA MER1_type 1 93 -96 2216 108 3 0 chr1 173785982 173786277 -68878076 - AluSx SINE Alu -16 296 1 335 246 56 71 chr1 173786453 173786602 -68877751 - MER5A DNA MER1_type -36 153 1 1996 165 125 42 chr1 173787311 173787500 -68876853 + MLT1C LTR MaLR 1 173 -294 2369 122 0 0 chr1 173787500 173787811 -68876542 + AluSq SINE Alu 1 311 -2 1996 165 125 42 chr1 173787811 173788052 -68876301 + MLT1C LTR MaLR 173 467 0 1076 274 103 50 chr1 173788254 173788861 -68875492 + L1MEd LINE L1 420 993 -5317 2172 123 0 10 chr1 173788861 173789163 -68875190 + AluSq SINE Alu 1 299 -14 1076 274 103 50 chr1 173789163 173789723 -68874630 + L1MEd LINE L1 993 1668 -4642 1788 226 18 62 chr1 173789764 173790331 -68874022 + MER34 LTR ERV1 1 542 0 469 308 39 81 chr1 173790359 173790791 -68873562 + L1MEd LINE L1 1780 2193 -4117 230 300 36 0 chr1 173790893 173791003 -68873350 + L1MEd LINE L1 2337 2450 -3679 276 250 0 0 chr1 173791004 173791084 -68873269 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr1 173791219 173791241 -68873112 + AT_rich Low_complexity Low_complexity 1 22 0 1221 277 89 39 chr1 173791245 173791661 -68872692 + L1MEd LINE L1 2576 2970 -3159 1983 232 131 6 chr1 173791661 173792165 -68872188 - MLT1F1 LTR MaLR 0 567 1 1221 277 89 39 chr1 173792165 173792331 -68872022 + L1MEd LINE L1 2970 3126 -3003 2393 102 3 0 chr1 173792331 173792634 -68871719 + AluSp SINE Alu 1 304 -9 1221 277 89 39 chr1 173792634 173792855 -68871498 + L1MEd LINE L1 3126 3334 -2795 1889 132 45 10 chr1 173792855 173793143 -68871210 + AluSx SINE Alu 1 298 -14 1221 277 89 39 chr1 173793143 173793450 -68870903 + L1MEd LINE L1 3334 3744 -2385 587 269 50 8 chr1 173793488 173793730 -68870623 + L1ME3A LINE L1 5696 5947 -223 214 267 267 19 chr1 173795251 173795356 -68868997 + MIR3 SINE MIR 66 196 -12 562 358 99 0 chr1 173796680 173797052 -68867301 + L2 LINE L2 2569 2977 -337 234 0 0 0 chr1 173797541 173797567 -68866786 + (CA)n Simple_repeat Simple_repeat 1 26 0 4132 67 28 0 chr1 173797927 173798465 -68865888 - MER41A LTR ERV1 -1 553 1 366 322 108 19 chr1 173799626 173799884 -68864469 + L2 LINE L2 3011 3291 -22 698 264 6 11 chr1 173800085 173800267 -68864086 + MER5A DNA MER1_type 9 189 0 2277 110 0 10 chr1 173800655 173800963 -68863390 - AluSg SINE Alu -5 305 1 1996 129 39 0 chr1 173801490 173801776 -68862577 - AluSx SINE Alu -15 297 1 979 120 0 0 chr1 173801780 173801913 -68862440 - FLAM_C SINE Alu -10 133 1 344 322 80 44 chr1 173802127 173802490 -68861863 + L2 LINE L2 1832 2207 -1107 289 259 83 28 chr1 173802792 173802900 -68861453 + L2 LINE L2 3154 3267 -5 2181 93 0 0 chr1 173803293 173803561 -68860792 + AluSg SINE Alu 15 282 -28 195 42 0 0 chr1 173803561 173803585 -68860768 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1092 284 35 11 chr1 173803781 173804158 -68860195 + MLT1J LTR MaLR 16 401 -110 1574 165 28 84 chr1 173804327 173804648 -68859705 + AluJb SINE Alu 1 303 -9 354 341 23 28 chr1 173805660 173805836 -68858517 - MIR3 SINE MIR -7 201 27 1132 167 28 14 chr1 173806270 173806486 -68857867 - MER20 DNA MER1_type 0 219 1 220 322 41 41 chr1 173806794 173806915 -68857438 - L2 LINE L2 -2 3311 3191 295 254 91 27 chr1 173807664 173807774 -68856579 + HAL1 LINE L1 607 723 -1784 556 290 45 25 chr1 173807918 173808118 -68856235 - MIR SINE MIR -26 236 33 431 317 50 6 chr1 173808641 173808821 -68855532 - MIR SINE MIR -26 236 49 2152 134 0 0 chr1 173809212 173809510 -68854843 - AluSx SINE Alu -14 298 1 250 363 95 22 chr1 173809636 173809815 -68854538 - MIR3 SINE MIR -14 194 3 353 305 53 0 chr1 173810247 173810342 -68854011 + L2 LINE L2 3209 3308 -5 294 137 0 0 chr1 173810382 173810433 -68853920 - L1P LINE L1 -1353 4793 4743 412 233 120 9 chr1 173811745 173811869 -68852484 + MER5A DNA MER1_type 12 163 -26 203 273 15 0 chr1 173811927 173811993 -68852360 + L2 LINE L2 1944 2010 -1304 4908 170 31 4 chr1 173812005 173813716 -68850637 - L1PB4 LINE L1 0 6156 4405 387 0 0 0 chr1 173813716 173813759 -68850594 + (TG)n Simple_repeat Simple_repeat 1 43 0 4908 170 31 4 chr1 173813759 173813803 -68850550 - L1PB4 LINE L1 -1751 4405 4364 2218 280 145 7 chr1 173813803 173814773 -68849580 + L2 LINE L2 1997 3149 -164 2191 116 0 3 chr1 173814773 173815066 -68849287 + AluSx SINE Alu 1 292 -20 2218 280 145 7 chr1 173815066 173815246 -68849107 + L2 LINE L2 3149 3303 -10 2389 101 3 0 chr1 173816248 173816555 -68847798 - AluSp SINE Alu -5 308 1 327 302 27 60 chr1 173816708 173816857 -68847496 + MIR3 SINE MIR 15 158 -50 778 219 6 19 chr1 173818527 173818687 -68845666 + FRAM SINE Alu 1 158 -18 713 268 152 9 chr1 173818700 173818926 -68845427 + MIR SINE MIR 15 262 0 587 240 57 29 chr1 173819226 173819401 -68844952 + MIR SINE MIR 80 259 -3 2525 117 28 48 chr1 173819813 173820173 -68844180 + MSTB LTR MaLR 1 352 -74 1940 131 20 10 chr1 173820173 173820341 -68844012 - AluJb SINE Alu -8 304 130 2130 126 3 0 chr1 173820341 173820635 -68843718 - AluSq SINE Alu -18 295 1 1940 131 20 10 chr1 173820635 173820763 -68843590 - AluJb SINE Alu -182 130 5 2525 117 28 48 chr1 173820763 173820837 -68843516 + MSTB LTR MaLR 352 426 0 295 301 107 10 chr1 173820934 173821112 -68843241 + L2 LINE L2 2439 2639 -675 2194 102 32 0 chr1 173821112 173821397 -68842956 + AluSx SINE Alu 1 294 -18 295 301 107 10 chr1 173821397 173821414 -68842939 + L2 LINE L2 2639 2653 -661 206 71 0 0 chr1 173822233 173822261 -68842092 + L2 LINE L2 3244 3271 -1 1764 136 7 71 chr1 173822396 173822706 -68841647 + AluJo SINE Alu 1 290 -22 327 49 0 0 chr1 173822709 173822750 -68841603 + (CA)n Simple_repeat Simple_repeat 2 42 0 2295 89 3 0 chr1 173822793 173823104 -68841249 + AluSp SINE Alu 1 312 0 25 31 0 0 chr1 173823887 173823919 -68840434 + AT_rich Low_complexity Low_complexity 1 32 0 265 256 214 17 chr1 173826787 173826904 -68837449 - MIR3 SINE MIR -2 206 67 1515 208 151 7 chr1 173827104 173827506 -68836847 + MLT2B1 LTR ERVL 3 476 -44 279 0 0 0 chr1 173827506 173827537 -68836816 + (CA)n Simple_repeat Simple_repeat 2 32 0 1515 208 151 7 chr1 173827537 173827577 -68836776 + MLT2B1 LTR ERVL 476 509 -11 556 303 107 15 chr1 173828620 173829105 -68835248 - L1ME3A LINE L1 -321 5849 5315 445 288 86 29 chr1 173829245 173829384 -68834969 - MER91A DNA MER1_type -3 193 47 * 681 144 10 0 chr1 173829376 173829480 -68834873 + MER5A DNA MER1_type 85 189 0 718 270 43 61 chr1 173829481 173829583 -68834770 - L1MC/D LINE L1 -2039 5769 5667 307 0 47 0 chr1 173829583 173829626 -68834727 + (TA)n Simple_repeat Simple_repeat 2 46 0 718 270 43 61 chr1 173829626 173829849 -68834504 - L1MC/D LINE L1 -2141 5667 5450 225 280 40 0 chr1 173830655 173830705 -68833648 + MIR SINE MIR 63 114 -148 593 240 0 0 chr1 173830879 173831008 -68833345 + MER3 DNA MER1_type 2 130 -79 298 298 0 0 chr1 173831049 173831153 -68833200 - L1MA9 LINE L1 -39 6273 6170 2318 99 0 7 chr1 173831178 173831481 -68832872 - AluY SINE Alu -10 301 1 283 189 0 0 chr1 173831482 173831535 -68832818 + MER3 DNA MER1_type 152 204 -5 311 287 15 45 chr1 173831595 173831762 -68832591 + MER5A DNA MER1_type 1 162 -16 22 0 0 0 chr1 173832894 173832916 -68831437 + AT_rich Low_complexity Low_complexity 1 22 0 32 67 0 0 chr1 173833114 173833174 -68831179 + AT_rich Low_complexity Low_complexity 1 60 0 2275 62 20 33 chr1 173833661 173833966 -68830387 - AluY SINE Alu -10 301 1 259 325 234 32 chr1 173834447 173834878 -68829475 + L2 LINE L2 2224 2741 -573 2246 93 49 36 chr1 173836717 173837104 -68827249 - L1MA5 LINE L1 -9 6291 5900 2252 89 17 0 chr1 173837312 173837604 -68826749 + AluSx SINE Alu 4 300 -12 1256 94 0 0 chr1 173837604 173837764 -68826589 + AluSp SINE Alu 134 293 -20 330 226 21 32 chr1 173837887 173837980 -68826373 + L1ME4a LINE L1 5961 6052 -69 2576 99 20 0 chr1 173838560 173838953 -68825400 - L1MA3 LINE L1 0 6305 5905 10806 165 30 8 chr1 173838961 173839047 -68825306 - L1 LINE L1 -748 6817 6734 2065 137 0 19 chr1 173839047 173839362 -68824991 - AluSx SINE Alu 0 312 4 10806 165 30 8 chr1 173839362 173841501 -68822852 - L1 LINE L1 -831 6734 4545 19243 116 114 14 chr1 173841512 173842683 -68821670 - L1 LINE L1 -3647 3918 2866 2157 135 3 0 chr1 173842683 173842994 -68821359 - AluSx SINE Alu 0 312 1 19243 116 114 14 chr1 173842994 173845369 -68818984 - L1 LINE L1 -4699 2866 17 418 231 23 0 chr1 173845683 173845813 -68818540 - L1ME1 LINE L1 -6 6160 6028 1799 250 116 5 chr1 173847417 173847448 -68816905 + HsTC2c DNA Tc2 2 28 -1870 2399 100 0 0 chr1 173847448 173847759 -68816594 - AluSx SINE Alu -1 311 1 1799 250 116 5 chr1 173847759 173848366 -68815987 + HsTC2c DNA Tc2 28 711 -18 3668 113 6 17 chr1 173848576 173849108 -68815245 - MER1A DNA MER1_type -1 526 1 210 284 0 27 chr1 173849937 173850011 -68814342 - MIR SINE MIR -25 237 166 2886 112 26 0 chr1 173850509 173850939 -68813414 + L1PA16 LINE L1 5717 6157 -9 1792 156 0 39 chr1 173850941 173851082 -68813271 + AluJb SINE Alu 1 146 -166 2100 99 7 0 chr1 173851082 173851378 -68812975 + AluSg SINE Alu 9 306 0 1792 156 0 39 chr1 173851378 173851542 -68812811 + AluJb SINE Alu 146 295 -17 1615 153 8 19 chr1 173851710 173851971 -68812382 + AluJb SINE Alu 30 287 -25 22 0 0 0 chr1 173852064 173852086 -68812267 + AT_rich Low_complexity Low_complexity 1 22 0 201 324 40 0 chr1 173852411 173852485 -68811868 - MIR3 SINE MIR -7 201 125 1046 237 112 39 chr1 173852890 173853354 -68810999 - MLT1D LTR MaLR -6 499 2 1007 191 12 0 chr1 173853609 173853782 -68810571 - FAM SINE Alu 0 175 1 273 301 0 48 chr1 173853952 173854035 -68810318 - L2 LINE L2 -1 3271 3193 534 244 36 56 chr1 173854130 173854339 -68810014 + MIR SINE MIR 3 211 -51 226 373 60 39 chr1 173854608 173854841 -68809512 - L2 LINE L2 -633 2681 2444 238 216 0 41 chr1 173854880 173854977 -68809376 + CT-rich Low_complexity Low_complexity 2 94 0 233 224 60 45 chr1 173855539 173855606 -68808747 - L2 LINE L2 0 3313 3246 234 353 59 0 chr1 173855905 173855990 -68808363 + L2 LINE L2 2996 3085 -187 618 307 74 20 chr1 173856029 173856273 -68808080 + MIR SINE MIR 5 261 -1 198 279 88 15 chr1 173856294 173856362 -68807991 + L2 LINE L2 3138 3210 -62 652 13 0 0 chr1 173857690 173857767 -68806586 - L1P LINE L1 -1904 4242 4166 2022 155 0 10 chr1 173857824 173858128 -68806225 + AluJb SINE Alu 1 301 -11 2542 46 0 3 chr1 173858869 173859174 -68805179 + AluY SINE Alu 2 305 -6 39 0 0 0 chr1 173860162 173860201 -68804152 + AT_rich Low_complexity Low_complexity 1 39 0 2167 92 4 0 chr1 173863285 173863558 -68800795 + AluSp SINE Alu 38 311 -2 1056 200 62 4 chr1 173863760 173864035 -68800318 + L1MB4 LINE L1 5886 6176 -4 435 256 185 20 chr1 173864220 173864415 -68799938 + L3 LINE CR1 1328 1554 -23 744 298 33 21 chr1 173864989 173865415 -68798938 + L1ME4a LINE L1 5638 6068 -53 24 0 0 0 chr1 173865439 173865463 -68798890 + AT_rich Low_complexity Low_complexity 1 24 0 2050 62 0 19 chr1 173865577 173865858 -68798495 + AluY SINE Alu 32 307 0 332 237 252 0 chr1 173865895 173866034 -68798319 - MIR SINE MIR 0 262 89 601 228 83 44 chr1 173867629 173867809 -68796544 + MIR SINE MIR 75 261 -1 2061 252 83 6 chr1 173867817 173868505 -68795848 + L2 LINE L2 2283 3237 -76 1850 164 13 13 chr1 173868593 173868898 -68795455 + AluJo SINE Alu 1 305 -7 1560 105 22 18 chr1 173868938 173869167 -68795186 + MER30 DNA MER1_type 1 230 0 284 298 137 8 chr1 173869256 173869380 -68794973 - MIR SINE MIR -122 140 1 630 313 66 4 chr1 173869567 173869794 -68794559 - MIR SINE MIR -1 261 21 384 253 132 52 chr1 173871231 173871405 -68792948 + MIR3 SINE MIR 21 208 0 919 178 32 95 chr1 173871412 173871761 -68792592 - MER33 DNA MER1_type -4 320 1 600 53 0 0 chr1 173871769 173871845 -68792508 + (TTTCC)n Simple_repeat Simple_repeat 3 78 0 1933 82 86 4 chr1 173871845 173872114 -68792239 - AluSc SINE Alu -16 293 3 431 247 62 27 chr1 173872332 173872478 -68791875 + MLT1J2 LTR MaLR 132 282 -168 1566 169 21 18 chr1 173872500 173872784 -68791569 - AluJo SINE Alu 0 312 28 1871 187 68 2 chr1 173872832 173873275 -68791078 + Charlie4a DNA MER1_type 16 487 -21 227 277 129 0 chr1 173873333 173873434 -68790919 + MLT1J2 LTR MaLR 334 447 -3 518 246 0 8 chr1 173873562 173873684 -68790669 + MER63A DNA MER1_type 90 210 0 1903 120 0 29 chr1 173874568 173874844 -68789509 + AluSx SINE Alu 1 268 -44 414 0 0 0 chr1 173874848 173874894 -68789459 + (CA)n Simple_repeat Simple_repeat 1 46 0 287 139 0 0 chr1 173875119 173875162 -68789191 + MIR SINE MIR 220 262 0 1390 235 72 36 chr1 173875855 173876358 -68787995 - L1MEc LINE L1 -5377 1019 499 627 236 24 19 chr1 173876359 173876567 -68787786 - HAL1 LINE L1 -1162 1345 1137 431 259 35 20 chr1 173876752 173876949 -68787404 - HAL1 LINE L1 -1371 1136 937 420 222 19 105 chr1 173876949 173877111 -68787242 - L2 LINE L2 -2 3311 3164 2082 99 3 14 chr1 173877116 173877432 -68786921 - AluSx SINE Alu 0 313 1 258 295 42 13 chr1 173877628 173877753 -68786600 + MIR SINE MIR 64 192 -58 1959 125 3 14 chr1 173877910 173878197 -68786156 - AluSx SINE Alu -28 284 1 2592 51 0 3 chr1 173878330 173878642 -68785711 - AluY SINE Alu 0 311 1 1245 228 127 34 chr1 173878820 173879294 -68785059 + MLT1L LTR MaLR 14 531 -84 1544 239 43 45 chr1 173879712 173880293 -68784060 + L1MC5 LINE L1 6614 7193 -768 679 298 103 38 chr1 173880497 173881343 -68783010 + L1M4 LINE L1 3917 4828 -1318 746 291 34 17 chr1 173881703 173881940 -68782413 + MIR SINE MIR 8 248 -14 298 149 0 75 chr1 173882183 173882250 -68782103 + L1MC5 LINE L1 7178 7239 -722 2478 66 0 0 chr1 173882293 173882594 -68781759 + AluY SINE Alu 1 301 -10 851 111 111 7 chr1 173882603 173882756 -68781597 - L1PA12 LINE L1 -309 5854 5686 2251 108 0 18 chr1 173882756 173883099 -68781254 + L1PA12 LINE L1 5832 6168 0 448 239 133 11 chr1 173883109 173883289 -68781064 + L1MC5 LINE L1 7314 7515 -446 500 238 148 55 chr1 173883427 173883842 -68780511 + MLT1H LTR MaLR 46 545 -4 255 286 13 78 chr1 173883843 173883997 -68780356 + L1ME3 LINE L1 5972 6115 -47 303 93 0 0 chr1 173884457 173884500 -68779853 + (TC)n Simple_repeat Simple_repeat 2 44 0 213 121 0 0 chr1 173884499 173884532 -68779821 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 1505 241 63 37 chr1 173885675 173886165 -68778188 - MLT1J LTR MaLR 0 511 9 508 271 45 106 chr1 173886216 173886642 -68777711 - MLT1L LTR MaLR -116 499 49 875 137 0 43 chr1 173886642 173886781 -68777572 - FLAM_C SINE Alu 0 133 1 508 271 45 106 chr1 173886781 173886833 -68777520 - MLT1L LTR MaLR -566 49 53 2029 138 0 10 chr1 173886833 173887137 -68777216 + AluJb SINE Alu 1 301 -11 508 271 45 106 chr1 173887137 173887188 -68777165 - MLT1L LTR MaLR -561 54 1 1876 152 33 3 chr1 173887951 173888254 -68776099 + AluJb SINE Alu 1 312 0 2205 115 0 0 chr1 173888337 173888625 -68775728 + AluSc SINE Alu 1 288 -21 418 295 127 83 chr1 173890934 173891595 -68772758 - L1M2 LINE L1 -5598 1251 562 700 202 6 55 chr1 173891737 173891833 -68772520 + MER5A DNA MER1_type 13 97 -92 183 42 0 0 chr1 173891833 173891857 -68772496 + (CA)n Simple_repeat Simple_repeat 2 25 0 700 202 6 55 chr1 173891857 173891943 -68772410 + MER5A DNA MER1_type 97 186 -3 490 250 96 6 chr1 173892432 173892588 -68771765 + L2 LINE L2 2478 2647 -667 901 279 136 26 chr1 173892625 173893008 -68771345 + L2 LINE L2 2823 3247 -66 456 276 0 29 chr1 173893066 173893171 -68771182 + L2 LINE L2 3212 3313 0 5373 114 55 11 chr1 173893526 173894038 -68770315 + L1PA15 LINE L1 4486 4974 -1191 1948 139 3 7 chr1 173894038 173894339 -68770014 - AluSx SINE Alu -12 300 1 5373 114 55 11 chr1 173894339 173894871 -68769482 + L1PA15 LINE L1 4974 5481 -684 2698 26 0 0 chr1 173894871 173895174 -68769179 + AluY SINE Alu 5 307 -4 5373 114 55 11 chr1 173895174 173895678 -68768675 + L1PA15 LINE L1 5481 6035 -130 1897 174 0 10 chr1 173895678 173895988 -68768365 + AluJb SINE Alu 1 307 -5 5373 114 55 11 chr1 173895988 173896119 -68768234 + L1PA15 LINE L1 6035 6159 -6 467 309 79 18 chr1 173896152 173896373 -68767980 + MIR SINE MIR 16 248 -14 240 113 94 0 chr1 173896810 173896863 -68767490 - L1MB7 LINE L1 0 6184 6127 315 0 0 0 chr1 173896909 173896944 -68767409 + (TG)n Simple_repeat Simple_repeat 2 36 0 547 216 185 0 chr1 173897144 173897306 -68767047 - MIR SINE MIR -56 206 15 406 253 80 96 chr1 173897333 173897697 -68766656 - L1ME4a LINE L1 -2 6119 5762 382 272 87 60 chr1 173897681 173897767 -68766586 - L1ME4a LINE L1 -615 5555 5473 * 207 0 0 0 chr1 173897767 173897790 -68766563 + (TTA)n Simple_repeat Simple_repeat 1 23 0 382 272 87 60 chr1 173897790 173898027 -68766326 - L1ME4a LINE L1 -697 5473 5226 24 0 0 0 chr1 173898274 173898298 -68766055 + AT_rich Low_complexity Low_complexity 1 24 0 320 380 8 0 chr1 173898352 173898481 -68765872 + MIR SINE MIR 18 147 -115 2083 141 10 0 chr1 173899791 173900090 -68764263 - AluSx SINE Alu -10 302 1 606 193 67 13 chr1 173900156 173900306 -68764047 - MER97a DNA MER1_type? -715 179 22 294 216 49 49 chr1 173900876 173900978 -68763375 + MLT1K LTR MaLR 485 586 -2 252 289 29 48 chr1 173901769 173901873 -68762480 + L2 LINE L2 3171 3272 0 261 359 11 11 chr1 173901955 173902047 -68762306 - MIR3 SINE MIR -25 183 92 1468 325 108 30 chr1 173902068 173903267 -68761086 - L2 LINE L2 -6 3307 2016 223 328 65 48 chr1 173903418 173903604 -68760749 - L2 LINE L2 -1715 1599 1411 555 277 24 0 chr1 173903912 173904078 -68760275 + MLT1L LTR MaLR 444 613 -2 373 301 63 35 chr1 173904543 173904686 -68759667 + L2 LINE L2 3122 3268 -4 1417 105 5 0 chr1 174005283 174005473 -68658880 - AluSx SINE Alu -108 204 14 647 174 9 0 chr1 174005486 174005601 -68658752 + Tigger7 DNA MER2_type 2472 2587 0 970 131 0 0 chr1 174006122 174006259 -68658094 + AluSg/x SINE Alu 162 298 -14 463 219 102 0 chr1 174006434 174006562 -68657791 - MIR SINE MIR -2 260 120 2307 99 77 26 chr1 174006742 174007209 -68657144 - MER1A DNA MER1_type 0 529 1 1338 163 91 41 chr1 174007887 174008206 -68656147 - L1MA4 LINE L1 0 6300 5966 395 202 11 0 chr1 174008743 174008837 -68655516 + (TG)n Simple_repeat Simple_repeat 2 96 0 180 111 0 0 chr1 174009173 174009200 -68655153 + (TAG)n Simple_repeat Simple_repeat 1 27 0 304 227 318 0 chr1 174009203 174009313 -68655040 - MIR SINE MIR -5 257 113 32 43 0 0 chr1 174010522 174010568 -68653785 + AT_rich Low_complexity Low_complexity 1 46 0 248 326 59 86 chr1 174010831 174011052 -68653301 - L2 LINE L2 -4 3268 3054 519 228 18 0 chr1 174011054 174011168 -68653185 - MER94 DNA DNA -6 128 13 305 354 173 15 chr1 174011482 174012019 -68652334 - L2 LINE L2 -458 2856 2235 359 217 113 9 chr1 174012213 174012319 -68652034 + L2 LINE L2 3197 3313 0 2365 88 0 0 chr1 174012672 174012968 -68651385 + AluY SINE Alu 1 296 -15 625 337 21 12 chr1 174013540 174013783 -68650570 - MIR SINE MIR 0 262 18 1670 151 36 23 chr1 174013906 174014277 -68650076 - Tigger3(Golem) DNA MER2_type -9 3020 1 569 208 128 83 chr1 174014277 174014724 -68649629 - L1MC5 LINE L1 -236 7725 7259 1843 164 27 0 chr1 174014724 174015022 -68649331 - AluJb SINE Alu -6 306 1 1347 228 100 56 chr1 174015146 174015808 -68648545 - L1MC5 LINE L1 -741 7220 6614 1313 220 33 125 chr1 174015815 174016048 -68648305 - L1MC5 LINE L1 -686 5468 5835 243 0 0 0 chr1 174016048 174016075 -68648278 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1313 220 33 125 chr1 174016075 174016572 -68647781 - L1MC5 LINE L1 -318 5836 5295 1963 117 3 24 chr1 174016573 174016894 -68647459 - AluSq SINE Alu 0 315 1 1381 164 14 20 chr1 174017119 174017466 -68646887 - Charlie5 DNA MER1_type -33 2579 2235 741 165 0 0 chr1 174017464 174017591 -68646762 - Charlie5 DNA MER1_type -2485 127 1 * 487 308 84 56 chr1 174017603 174017755 -68646598 - L1MC5 LINE L1 -1089 5057 4911 1499 151 33 16 chr1 174017755 174018000 -68646353 + AluJo SINE Alu 50 298 -14 487 308 84 56 chr1 174018000 174018168 -68646185 - L1MC5 LINE L1 -1235 4911 4728 332 318 61 40 chr1 174018161 174018309 -68646044 + L1ME3A LINE L1 5422 5572 -598 * 690 224 91 8 chr1 174018505 174018768 -68645585 + L1ME3A LINE L1 5683 5967 -203 668 267 118 18 chr1 174019371 174019592 -68644761 - MIR SINE MIR -3 259 17 814 219 95 82 chr1 174019657 174020045 -68644308 - MSTD LTR MaLR -3 393 1 1898 160 3 0 chr1 174020562 174020862 -68643491 - AluJb SINE Alu -11 301 1 1005 172 6 0 chr1 174022162 174022325 -68642028 - FRAM SINE Alu -12 164 1 1537 185 32 55 chr1 174022330 174022638 -68641715 - AluJo SINE Alu -7 305 5 455 0 18 0 chr1 174025977 174026032 -68638321 + (TA)n Simple_repeat Simple_repeat 2 57 0 1901 112 45 0 chr1 174026032 174026319 -68638034 - AluSq SINE Alu -13 300 1 2605 48 0 3 chr1 174026779 174027089 -68637264 - AluY SINE Alu -2 309 1 1405 154 0 0 chr1 174027979 174028193 -68636160 + AluJo SINE Alu 87 300 -12 188 308 31 0 chr1 174029441 174029506 -68634847 + L2 LINE L2 3202 3268 -4 1487 197 35 0 chr1 174029511 174029795 -68634558 - AluJo SINE Alu -18 294 1 274 353 10 20 chr1 174030573 174030675 -68633678 + MIR SINE MIR 21 121 -87 550 305 45 6 chr1 174030711 174030888 -68633465 - MER5A DNA MER1_type -3 186 3 400 242 68 0 chr1 174030894 174031026 -68633327 - MER112 DNA MER1_type -1 259 119 288 124 0 20 chr1 174031034 174031091 -68633262 - MLT1-int LTR MaLR -1308 63 14 207 0 0 0 chr1 174031763 174031786 -68632567 + (TTTAA)n Simple_repeat Simple_repeat 2 24 0 806 252 104 46 chr1 174031909 174032302 -68632051 + MARNA DNA Mariner 144 559 -27 1741 144 34 17 chr1 174033588 174033880 -68630473 - AluJb SINE Alu -14 298 2 487 290 67 30 chr1 174034458 174034684 -68629669 + MIR SINE MIR 20 254 -8 858 239 208 16 chr1 174034823 174035405 -68628948 - L2 LINE L2 0 3313 2633 1433 170 111 4 chr1 174036494 174036765 -68627588 - AluJo SINE Alu -12 300 1 21 0 0 0 chr1 174036901 174036922 -68627431 + AT_rich Low_complexity Low_complexity 1 21 0 951 274 20 4 chr1 174037713 174037965 -68626388 - MIR SINE MIR 0 262 7 356 361 100 13 chr1 174038308 174038538 -68625815 + MIR SINE MIR 13 262 0 202 360 140 42 chr1 174038536 174038772 -68625581 - L2 LINE L2 -21 3251 2993 * 272 320 20 20 chr1 174038809 174038909 -68625444 - L2 LINE L2 -530 2784 2685 399 309 8 24 chr1 174038968 174039094 -68625259 - L3 LINE CR1 -45 1532 1409 602 136 8 0 chr1 174039136 174039254 -68625099 + (TCCA)n Simple_repeat Simple_repeat 2 120 0 269 297 85 34 chr1 174039254 174039372 -68624981 - L2 LINE L2 0 3272 3149 222 302 88 51 chr1 174039385 174039600 -68624753 - L3 LINE CR1 -167 1410 1188 563 247 24 65 chr1 174039621 174039791 -68624562 - MIR3 SINE MIR -3 205 43 275 325 58 17 chr1 174039819 174039939 -68624414 - L3 LINE CR1 -410 1167 1043 581 256 53 34 chr1 174039977 174040184 -68624169 - MIR SINE MIR -31 231 21 403 326 37 21 chr1 174040243 174040430 -68623923 - L3 LINE CR1 -610 967 778 1855 160 20 0 chr1 174040635 174040928 -68623425 - AluJo SINE Alu -12 300 2 203 333 31 57 chr1 174040987 174041146 -68623207 + L2 LINE L2 2916 3070 -202 454 269 29 47 chr1 174041361 174041532 -68622821 - L3 LINE CR1 -848 729 562 563 321 149 26 chr1 174041636 174042235 -68622118 + L2 LINE L2 2591 3267 -5 207 270 103 56 chr1 174042247 174042373 -68621980 - L2 LINE L2 0 3272 3141 299 332 118 11 chr1 174042421 174042608 -68621745 - L3 LINE CR1 -1061 516 310 22 0 0 0 chr1 174042683 174042705 -68621648 + AT_rich Low_complexity Low_complexity 1 22 0 377 264 19 9 chr1 174042918 174043024 -68621329 + MIR3 SINE MIR 81 187 -21 534 267 92 0 chr1 174043350 174043481 -68620872 + MIR SINE MIR 40 182 -80 210 315 0 0 chr1 174044437 174044491 -68619862 - L2 LINE L2 0 3272 3219 634 138 29 129 chr1 174045054 174045194 -68619159 - MER53 DNA DNA 0 189 75 2434 81 0 13 chr1 174045194 174045501 -68618852 + AluY SINE Alu 1 303 -8 634 138 29 129 chr1 174045501 174045570 -68618783 - MER53 DNA DNA -114 75 1 2561 92 22 0 chr1 174046143 174046500 -68617853 - L1P LINE L1 -1483 4663 4299 * 5130 77 0 2 chr1 174046493 174047174 -68617179 + L1M LINE L1 4648 5323 -832 7376 53 10 0 chr1 174047174 174048046 -68616307 + L1PA7 LINE L1 5273 6154 0 5130 77 0 2 chr1 174048046 174048061 -68616292 + L1M LINE L1 5323 5337 -818 689 199 20 0 chr1 174048930 174049081 -68615272 - Charlie5 DNA MER1_type -31 2581 2428 336 247 0 24 chr1 174049055 174049140 -68615213 - Charlie5 DNA MER1_type -2522 90 8 * 190 306 36 132 chr1 174049323 174049542 -68614811 + L2 LINE L2 3030 3227 -45 204 261 120 11 chr1 174049652 174049744 -68614609 - MIR SINE MIR -50 212 111 1074 321 203 20 chr1 174049756 174050701 -68613652 - L2 LINE L2 -2 3311 2540 2038 146 3 0 chr1 174050701 174051009 -68613344 - AluSx SINE Alu -2 310 2 1074 321 203 20 chr1 174051009 174051734 -68612619 - L2 LINE L2 -773 2540 1336 400 286 104 63 chr1 174052081 174052368 -68611985 - L2 LINE L2 -9 3304 3006 3441 120 35 6 chr1 174052994 174053484 -68610869 - MER1A DNA MER1_type 0 529 26 184 353 15 29 chr1 174054035 174054103 -68610250 + L2 LINE L2 3125 3191 -81 2276 116 0 0 chr1 174054296 174054606 -68609747 + AluSx SINE Alu 1 310 -2 562 292 0 0 chr1 174054646 174054776 -68609577 + MIR SINE MIR 32 161 -101 885 150 0 15 chr1 174055036 174055169 -68609184 + FLAM_C SINE Alu 1 131 -2 2129 113 6 35 chr1 174055600 174055919 -68608434 - AluSx SINE Alu -2 310 1 243 250 164 19 chr1 174056919 174057023 -68607330 - MIR SINE MIR -16 246 128 503 290 91 28 chr1 174057362 174057593 -68606760 + MIR SINE MIR 5 248 -14 315 378 99 0 chr1 174057650 174057801 -68606552 + MIR SINE MIR 26 191 -71 22 35 0 0 chr1 174058149 174058178 -68606175 + AT_rich Low_complexity Low_complexity 1 29 0 2628 102 8 6 chr1 174059616 174059970 -68604383 + THE1A LTR MaLR 1 355 0 281 176 80 88 chr1 174059984 174060109 -68604244 + MIR SINE MIR 68 191 -71 279 0 0 0 chr1 174060711 174060742 -68603611 + (TC)n Simple_repeat Simple_repeat 1 31 0 1316 202 76 67 chr1 174061777 174062371 -68601982 + L1MC5 LINE L1 7249 7925 -36 2097 148 0 0 chr1 174063453 174063751 -68600602 - AluSx SINE Alu -14 298 1 24 32 0 0 chr1 174064358 174064389 -68599964 + AT_rich Low_complexity Low_complexity 1 31 0 4971 32 2 0 chr1 174064417 174064971 -68599382 - L1PA4 LINE L1 0 6155 5601 207 0 0 0 chr1 174066238 174066261 -68598092 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2073 126 0 0 chr1 174066265 174066543 -68597810 - AluSx SINE Alu -32 280 3 1725 176 0 44 chr1 174066650 174066968 -68597385 - AluJo SINE Alu -4 308 5 24 32 0 0 chr1 174067274 174067305 -68597048 + AT_rich Low_complexity Low_complexity 1 31 0 724 200 13 13 chr1 174069689 174069838 -68594515 - MER4C LTR ERV1 -3 462 314 2493 131 38 5 chr1 174069838 174070236 -68594117 + MSTA LTR MaLR 1 411 -17 559 131 0 189 chr1 174070274 174070449 -68593904 - MER4C LTR ERV1 -147 318 177 486 256 131 6 chr1 174070686 174070846 -68593507 - MER5A DNA MER1_type -6 183 4 291 267 27 0 chr1 174071046 174071121 -68593232 + L2 LINE L2 3189 3265 -7 2522 179 37 2 chr1 174071267 174071697 -68592656 + LTR24 LTR ERV1 23 467 0 26 0 0 0 chr1 174072821 174072847 -68591506 + AT_rich Low_complexity Low_complexity 1 26 0 671 307 71 1 chr1 174073278 174073506 -68590847 - MIR SINE MIR -17 245 5 254 274 135 79 chr1 174075001 174075216 -68589137 - L2 LINE L2 -49 3223 2997 637 185 0 0 chr1 174075988 174076182 -68588171 - FLAM_A SINE Alu 0 225 32 2334 109 0 3 chr1 174078167 174078479 -68585874 + AluSx SINE Alu 1 311 -1 205 325 123 39 chr1 174079236 174079439 -68584914 - L2 LINE L2 -189 3083 2864 335 309 43 37 chr1 174079522 174079710 -68584643 - L2 LINE L2 -3 3310 3122 185 275 88 33 chr1 174079876 174079967 -68584386 - L2 LINE L2 -19 3294 3199 219 114 0 0 chr1 174080279 174080314 -68584039 + (TC)n Simple_repeat Simple_repeat 2 36 0 789 162 0 0 chr1 174080321 174080438 -68583915 - FLAM_C SINE Alu -16 117 1 313 328 125 0 chr1 174082577 174082705 -68581648 - L2 LINE L2 0 3272 3129 374 221 242 20 chr1 174083127 174083276 -68581077 - MIR SINE MIR -1 261 80 225 0 0 0 chr1 174083355 174083380 -68580973 + (TG)n Simple_repeat Simple_repeat 1 25 0 264 158 0 0 chr1 174083380 174083437 -68580916 + GA-rich Low_complexity Low_complexity 2 58 0 22 0 0 0 chr1 174083743 174083765 -68580588 + AT_rich Low_complexity Low_complexity 1 22 0 2143 108 4 0 chr1 174084004 174084319 -68580034 + AluSx SINE Alu 1 283 -29 2105 123 0 46 chr1 174084320 174084644 -68579709 + AluSx SINE Alu 1 309 -3 2161 145 0 0 chr1 174085964 174086274 -68578079 + AluSx SINE Alu 1 310 -2 24 32 0 0 chr1 174087493 174087524 -68576829 + AT_rich Low_complexity Low_complexity 1 31 0 208 310 9 80 chr1 174089245 174089358 -68574995 + L2 LINE L2 3168 3272 0 257 245 0 10 chr1 174090328 174090426 -68573927 + (CAG)n Simple_repeat Simple_repeat 1 97 0 214 381 37 22 chr1 174090747 174090881 -68573472 + L2 LINE L2 2902 3037 -235 432 0 0 0 chr1 174091102 174091150 -68573203 + (TG)n Simple_repeat Simple_repeat 2 49 0 1580 103 8 0 chr1 174093021 174093264 -68571089 - L1MA4A LINE L1 -3 6300 6056 461 282 128 21 chr1 174093720 174093954 -68570399 + Charlie8 DNA MER1_type 1 259 -2158 536 252 149 19 chr1 174094719 174094943 -68569410 - MIR SINE MIR -1 261 15 1924 159 7 10 chr1 174094981 174095290 -68569063 - AluJb SINE Alu -4 308 1 214 370 51 72 chr1 174095293 174095569 -68568784 - L2 LINE L2 0 3272 3003 3103 134 42 44 chr1 174095970 174096582 -68567771 - LTR36 LTR ERV1 0 611 1 336 273 34 78 chr1 174096644 174096849 -68567504 - MLT1H LTR MaLR -231 318 123 636 232 172 12 chr1 174097419 174097806 -68566547 - MLT1H LTR MaLR 0 555 89 2079 96 0 18 chr1 174099305 174099577 -68564776 - AluSx SINE Alu -26 286 20 239 321 140 45 chr1 174099658 174099901 -68564452 + L2 LINE L2 2916 3181 -91 342 0 0 0 chr1 174100252 174100290 -68564063 + (TG)n Simple_repeat Simple_repeat 1 38 0 220 222 0 0 chr1 174100332 174100377 -68563976 + MIR SINE MIR 157 201 -61 1311 153 70 42 chr1 174100519 174100832 -68563521 + MER33 DNA MER1_type 3 324 0 239 241 17 0 chr1 174101515 174101573 -68562780 + MIR SINE MIR 204 262 0 391 291 74 44 chr1 174101680 174101883 -68562470 + MIR SINE MIR 46 254 -8 195 236 222 0 chr1 174102778 174102850 -68561503 - MIR SINE MIR -105 157 70 755 249 50 58 chr1 174103056 174103297 -68561056 + MIR SINE MIR 3 241 -21 200 309 0 0 chr1 174103265 174103307 -68561046 + L2 LINE L2 3214 3255 -17 * 389 289 54 68 chr1 174103966 174104050 -68560303 + L1ME LINE L1 4944 5028 -1118 2198 115 3 3 chr1 174104050 174104354 -68559999 + AluSx SINE Alu 1 304 -8 389 289 54 68 chr1 174104354 174104563 -68559790 + L1ME LINE L1 5028 5233 -913 338 308 77 26 chr1 174104575 174104974 -68559379 + L1ME LINE L1 5255 5679 -442 341 295 35 22 chr1 174105013 174105312 -68559041 + HAL1b LINE L1 1189 1339 -9 327 388 102 34 chr1 174105535 174105860 -68558493 - L2 LINE L2 -1 3271 2925 521 197 103 8 chr1 174106400 174106517 -68557836 + MIR SINE MIR 122 249 -13 1978 149 0 22 chr1 174106704 174107019 -68557334 - AluJb SINE Alu -4 308 1 682 299 194 8 chr1 174109286 174109931 -68554422 - L2 LINE L2 -2 3311 2535 2388 90 3 0 chr1 174111007 174111308 -68553045 + AluSg1 SINE Alu 1 302 -7 620 270 88 9 chr1 174114224 174114450 -68549903 + MIR SINE MIR 19 262 0 459 186 0 0 chr1 174114452 174114549 -68549804 + CT-rich Low_complexity Low_complexity 3 99 0 290 270 216 14 chr1 174115058 174115206 -68549147 + MIR SINE MIR 12 189 -73 310 341 148 13 chr1 174116684 174117056 -68547297 + L2 LINE L2 2891 3312 -1 300 232 48 71 chr1 174117215 174117455 -68546898 + L1MC/D LINE L1 5274 5507 -885 1312 181 101 52 chr1 174117478 174117826 -68546527 - MLT1A1 LTR MaLR 0 365 1 2140 153 0 0 chr1 174118163 174118470 -68545883 + AluJb SINE Alu 1 307 -5 326 226 20 69 chr1 174120692 174120794 -68543559 - L1MC4 LINE L1 -1339 6703 6607 2219 109 7 3 chr1 174120848 174121152 -68543201 + AluSq SINE Alu 1 305 -8 208 98 0 39 chr1 174122335 174122386 -68541967 + (TA)n Simple_repeat Simple_repeat 2 50 0 432 302 118 2 chr1 174125208 174125412 -68538941 + MIR SINE MIR 16 240 -22 224 264 138 11 chr1 174125537 174125624 -68538729 - L2 LINE L2 -18 3295 3198 213 273 94 47 chr1 174125632 174125760 -68538593 - L2 LINE L2 -1 3312 3179 202 246 0 33 chr1 174126874 174126935 -68537418 + L2 LINE L2 3213 3271 -1 2118 153 33 8 chr1 174127009 174127375 -68536978 - THE1C LTR MaLR 0 375 1 307 301 78 36 chr1 174127594 174127760 -68536593 + L2 LINE L2 3120 3292 -21 241 329 24 0 chr1 174128034 174128119 -68536234 + MIR SINE MIR 60 146 -116 1709 130 3 47 chr1 174128144 174128540 -68535813 + Charlie3 DNA MER1_type 1 2712 0 311 365 129 3 chr1 174128540 174128874 -68535479 + L1MC4a LINE L1 5028 5403 -743 1795 162 0 26 chr1 174129382 174129685 -68534668 + AluJo SINE Alu 1 295 -17 649 285 149 13 chr1 174129798 174130195 -68534158 + L1MC4a LINE L1 5405 5855 -1953 403 254 18 0 chr1 174130388 174130498 -68533855 + MIR SINE MIR 119 230 -32 186 103 0 0 chr1 174131124 174131153 -68533200 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2096 128 24 0 chr1 174131182 174131480 -68532873 - AluSq SINE Alu -8 305 1 1973 139 21 51 chr1 174131824 174132199 -68532154 - THE1B LTR MaLR 0 364 1 2100 94 31 14 chr1 174136269 174136556 -68527797 - AluSp SINE Alu -21 292 1 8846 157 58 80 chr1 174136589 174138062 -68526291 + L1MC3 LINE L1 5585 6995 -790 1782 172 3 10 chr1 174138062 174138353 -68526000 - AluJo SINE Alu -21 291 3 8846 157 58 80 chr1 174138353 174139121 -68525232 + L1MC3 LINE L1 6995 7778 -7 351 323 107 55 chr1 174139183 174139511 -68524842 - L1MC/D LINE L1 -2095 5713 5369 318 240 281 0 chr1 174139511 174139607 -68524746 + L2 LINE L2 3191 3313 0 23 0 0 0 chr1 174140542 174140565 -68523788 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr1 174142164 174142191 -68522162 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 417 360 34 34 chr1 174142193 174142426 -68521927 - L2 LINE L2 -10 3262 3030 349 348 36 51 chr1 174142590 174142728 -68521625 - L2 LINE L2 -1 3271 3136 628 279 88 22 chr1 174143034 174143260 -68521093 + MIR SINE MIR 14 254 -8 394 224 0 0 chr1 174143373 174143458 -68520895 + MIR SINE MIR 172 256 -6 295 348 67 20 chr1 174143396 174143616 -68520737 - MIR SINE MIR -10 252 25 * 259 288 70 70 chr1 174143753 174143802 -68520551 - L1ME4a LINE L1 -212 5909 5861 198 0 0 0 chr1 174143802 174143824 -68520529 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 1899 103 0 4 chr1 174143826 174144078 -68520275 - AluSq SINE Alu -28 285 35 259 288 70 70 chr1 174144078 174144369 -68519984 - L1ME4a LINE L1 -260 5861 5566 241 369 131 0 chr1 174144599 174144729 -68519624 - L2 LINE L2 -2 3270 3124 551 253 84 111 chr1 174145229 174145490 -68518863 + MIR SINE MIR 7 260 -2 525 226 206 7 chr1 174145608 174145763 -68518590 + MIR SINE MIR 71 256 -6 339 150 0 0 chr1 174145764 174145824 -68518529 + (ATG)n Simple_repeat Simple_repeat 3 62 0 246 62 0 0 chr1 174145954 174145986 -68518367 + (T)n Simple_repeat Simple_repeat 1 32 0 490 300 100 21 chr1 174147510 174147750 -68516603 + MIR SINE MIR 4 262 0 1721 191 0 14 chr1 174147830 174148124 -68516229 + AluJo SINE Alu 1 290 -22 290 289 36 0 chr1 174148212 174148295 -68516058 + MIR SINE MIR 65 150 -58 332 268 0 12 chr1 174148727 174148809 -68515544 + L2 LINE L2 3233 3313 0 219 263 42 42 chr1 174149502 174149597 -68514756 - MIR SINE MIR -30 232 138 219 328 30 0 chr1 174149730 174149797 -68514556 - MIR SINE MIR -104 104 36 234 314 109 51 chr1 174149990 174150127 -68514226 - L2 LINE L2 -2 3311 3167 306 191 32 0 chr1 174151498 174151561 -68512792 + MIR SINE MIR 81 145 -63 676 293 85 10 chr1 174151601 174151908 -68512445 - MLT1J LTR MaLR -74 437 108 4619 179 17 23 chr1 174152485 174153011 -68511342 - L1MB3 LINE L1 0 6183 5655 2303 90 7 0 chr1 174153011 174153311 -68511042 - AluSp SINE Alu -6 307 6 4619 179 17 23 chr1 174153311 174154236 -68510117 - L1MB3 LINE L1 -528 5655 4738 3560 178 19 12 chr1 174154242 174154994 -68509359 - L1MB3 LINE L1 -1877 4269 3513 1142 266 65 11 chr1 174155056 174155424 -68508929 + MLT1I LTR MaLR 1 388 -21 2125 123 13 3 chr1 174155789 174156098 -68508255 - AluSx SINE Alu 0 312 1 317 326 158 25 chr1 174156322 174156518 -68507835 - MIR SINE MIR -1 261 40 646 201 255 5 chr1 174157603 174157787 -68506566 - MIR SINE MIR 0 262 33 1531 140 61 29 chr1 174158447 174158726 -68505627 + AluJo SINE Alu 13 300 -12 237 305 46 15 chr1 174159768 174159899 -68504454 + L1P3 LINE L1 5410 5544 -628 1869 209 57 64 chr1 174159996 174160542 -68503811 - MLT1F LTR MaLR 0 542 1 294 260 102 11 chr1 174160606 174160783 -68503570 + L1MC4a LINE L1 5770 5962 -1846 2099 151 0 0 chr1 174161520 174161819 -68502534 + AluSx SINE Alu 1 299 -13 420 248 48 0 chr1 174161822 174161927 -68502426 - L2 LINE L2 -23 3290 3181 204 320 136 40 chr1 174162198 174162323 -68502030 - MER91A DNA MER1_type -59 137 1 * 305 296 87 79 chr1 174162323 174162595 -68501758 - L2 LINE L2 -215 3057 2781 180 0 0 0 chr1 174162788 174162808 -68501545 + (T)n Simple_repeat Simple_repeat 1 20 0 441 50 0 0 chr1 174163582 174163642 -68500711 + (CA)n Simple_repeat Simple_repeat 2 61 0 930 52 0 0 chr1 174163777 174163893 -68500460 - AluY SINE Alu -7 304 189 1737 138 45 131 chr1 174163968 174164503 -68499850 + Charlie4a DNA MER1_type 20 508 0 242 262 131 0 chr1 174164509 174164593 -68499760 + MIR SINE MIR 49 143 -119 33 43 0 0 chr1 174164796 174164843 -68499510 + AT_rich Low_complexity Low_complexity 1 47 0 279 217 33 0 chr1 174165252 174165312 -68499041 + Tigger5 DNA MER2_type 1 62 -2261 * 903 144 6 0 chr1 174165310 174165470 -68498883 + Tigger5 DNA MER2_type 2062 2222 -101 1992 136 0 7 chr1 174165882 174166204 -68498149 - AluJb SINE Alu 0 320 1 346 156 13 3 chr1 174167096 174167326 -68497027 + AluJb SINE Alu 5 297 -5 306 230 95 81 chr1 174167595 174167743 -68496610 + L1ME4a LINE L1 5320 5469 -652 409 288 151 20 chr1 174167800 174168092 -68496261 + L1ME4a LINE L1 5507 5836 -285 210 224 17 35 chr1 174168375 174168433 -68495920 + MIR SINE MIR 195 251 -11 190 184 0 53 chr1 174168401 174168439 -68495914 + L2 LINE L2 3267 3302 -11 * 395 273 75 57 chr1 174170340 174170567 -68493786 + L2 LINE L2 3083 3313 0 270 183 0 0 chr1 174170883 174170954 -68493399 + (CA)n Simple_repeat Simple_repeat 1 71 0 218 32 32 0 chr1 174171448 174171479 -68492874 + (CA)n Simple_repeat Simple_repeat 2 33 0 3426 68 0 0 chr1 174172621 174173065 -68491288 - L1PB1 LINE L1 0 6151 5708 272 333 75 17 chr1 174173874 174174048 -68490305 - L3 LINE CR1 -12 1565 1382 385 253 68 5 chr1 174174048 174174255 -68490098 + MIR SINE MIR 85 260 -2 393 291 13 40 chr1 174174271 174174422 -68489931 + MIR SINE MIR 2 148 -114 1744 167 82 21 chr1 174174454 174174832 -68489521 + MSTA LTR MaLR 1 401 -27 1038 109 6 11 chr1 174174839 174175014 -68489339 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 1650 148 38 19 chr1 174175020 174175284 -68489069 - AluJb SINE Alu -43 269 1 983 121 0 0 chr1 174175287 174175419 -68488934 - AluJo/FLAM SINE Alu -180 132 1 1689 106 0 68 chr1 174176979 174177266 -68487087 - AluSg SINE Alu 0 303 35 389 204 45 23 chr1 174179272 174179360 -68484993 + MIR SINE MIR 90 179 -83 231 287 174 0 chr1 174179492 174179607 -68484746 + MIR SINE MIR 81 215 -47 2133 114 14 0 chr1 174179682 174179972 -68484381 - AluSx SINE Alu -18 294 1 340 235 301 36 chr1 174179980 174180146 -68484207 + HAL1 LINE L1 100 309 -2198 355 257 43 57 chr1 174180313 174180453 -68483900 + MIR3 SINE MIR 42 179 -29 481 283 90 49 chr1 174180615 174180859 -68483494 - MIR SINE MIR 0 262 9 928 221 44 8 chr1 174183237 174183559 -68480794 + LTR38B LTR ERV1 160 497 -59 1668 102 0 4 chr1 174183572 174183817 -68480536 - L1MB3 LINE L1 -7 6176 5933 689 213 0 8 chr1 174184944 174185071 -68479282 + FLAM_A SINE Alu 2 127 -6 28 48 0 0 chr1 174185480 174185522 -68478831 + AT_rich Low_complexity Low_complexity 1 42 0 1909 157 50 35 chr1 174186131 174186379 -68477974 - MER7A DNA MER2_type -2692 346 92 2812 3 0 13 chr1 174186379 174186691 -68477662 + AluYa5 SINE Alu 1 308 -3 1909 157 50 35 chr1 174186691 174186785 -68477568 - MER7A DNA MER2_type -2946 92 1 303 276 147 39 chr1 174187240 174187396 -68476957 + MIR SINE MIR 78 250 -12 256 356 0 0 chr1 174187360 174187447 -68476906 - MIR SINE MIR 0 262 176 * 2300 98 3 0 chr1 174188039 174188335 -68476018 + AluSg SINE Alu 1 297 -13 3846 89 16 2 chr1 174188520 174189025 -68475328 + MER75 DNA T2_type 1 512 -2 702 125 0 0 chr1 174189104 174189208 -68475145 + L1PA16 LINE L1 6054 6157 -9 34 0 0 0 chr1 174189210 174189244 -68475109 + AT_rich Low_complexity Low_complexity 1 34 0 2170 115 0 32 chr1 174189280 174189593 -68474760 + AluSx SINE Alu 1 303 -9 192 77 0 0 chr1 174190979 174191005 -68473348 + (A)n Simple_repeat Simple_repeat 1 26 0 294 301 101 45 chr1 174191328 174191489 -68472864 + MLT1K LTR MaLR 379 554 -34 2458 92 0 0 chr1 174191489 174191792 -68472561 - AluSx SINE Alu -9 303 1 294 301 101 45 chr1 174191792 174191829 -68472524 + MLT1K LTR MaLR 554 588 0 452 313 106 12 chr1 174192050 174192306 -68472047 + L2 LINE L2 2602 2881 -433 337 229 42 10 chr1 174192319 174192415 -68471938 + MLT1D-int LTR MaLR 1273 1371 0 1725 218 157 22 chr1 174192415 174192860 -68471493 + MLT1D LTR MaLR 1 505 0 2249 109 0 13 chr1 174193310 174193623 -68470730 - AluSg SINE Alu -1 309 1 263 209 75 15 chr1 174194152 174194219 -68470134 + MLT1I LTR MaLR 1 71 -338 677 134 101 0 chr1 174194220 174194339 -68470014 - HSMAR2 DNA Mariner -27 1275 1145 195 42 0 0 chr1 174194361 174194385 -68469968 + (A)n Simple_repeat Simple_repeat 1 24 0 1887 149 7 45 chr1 174194411 174194719 -68469634 - AluSx SINE Alu -16 296 1 705 107 10 0 chr1 174194748 174194851 -68469502 - FLAM_C SINE Alu 0 143 40 2489 84 6 0 chr1 174194865 174195176 -68469177 - AluSq SINE Alu 0 313 1 7782 107 8 3 chr1 174195212 174196285 -68468068 - HSMAR2 DNA Mariner -221 1081 4 289 265 0 0 chr1 174196288 174196356 -68467997 + MLT1I LTR MaLR 68 135 -274 484 247 95 19 chr1 174196409 174196512 -68467841 + MLT1I LTR MaLR 237 358 -51 2253 107 0 10 chr1 174196512 174196812 -68467541 + AluSx SINE Alu 1 297 -15 484 247 95 19 chr1 174196812 174196866 -68467487 + MLT1I LTR MaLR 358 406 -3 228 35 0 0 chr1 174198187 174198216 -68466137 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2226 104 0 0 chr1 174198218 174198506 -68465847 - AluSx SINE Alu -24 288 1 21 0 0 0 chr1 174198824 174198845 -68465508 + AT_rich Low_complexity Low_complexity 1 21 0 439 250 34 34 chr1 174198989 174199137 -68465216 - MER5A DNA MER1_type -5 184 37 216 97 0 0 chr1 174199492 174199523 -68464830 + (T)n Simple_repeat Simple_repeat 1 31 0 3116 247 18 5 chr1 174199716 174200450 -68463903 + L1ME1 LINE L1 5418 6160 -6 3384 195 67 26 chr1 174200545 174200833 -68463520 + Charlie1a DNA MER1_type 10 285 -2476 6531 89 32 69 chr1 174200833 174201653 -68462700 - L1PA13 LINE L1 -4 6159 5310 2575 24 7 3 chr1 174201653 174201950 -68462403 - AluY SINE Alu -13 298 1 6531 89 32 69 chr1 174201950 174202892 -68461461 - L1PA13 LINE L1 -853 5310 4335 405 0 0 0 chr1 174202892 174202937 -68461416 + (TG)n Simple_repeat Simple_repeat 2 46 0 6531 89 32 69 chr1 174202937 174203023 -68461330 - L1PA13 LINE L1 -1828 4335 4334 1659 143 147 0 chr1 174203023 174203282 -68461071 - AluSx SINE Alu -5 297 1 6531 89 32 69 chr1 174203282 174203329 -68461024 - L1PA13 LINE L1 -1829 4334 4287 3384 195 67 26 chr1 174203329 174203782 -68460571 + Charlie1a DNA MER1_type 285 782 -673 231 179 0 0 chr1 174203790 174203829 -68460524 + Charlie1a DNA MER1_type 1417 1455 0 983 189 21 129 chr1 174203829 174204115 -68460238 + MIR SINE MIR 8 262 0 209 187 176 44 chr1 174204728 174204819 -68459534 - L2 LINE L2 -1 3271 3169 1261 180 77 65 chr1 174206212 174206551 -68457802 - MER2 DNA MER2_type -1 343 1 270 252 28 56 chr1 174206719 174206862 -68457491 + L1ME3 LINE L1 5038 5176 -970 512 255 58 34 chr1 174206868 174206892 -68457461 + L1ME3 LINE L1 5739 5761 -409 2512 62 0 0 chr1 174206892 174207196 -68457157 + AluY SINE Alu 1 304 -7 512 255 58 34 chr1 174207196 174207379 -68456974 + L1ME3 LINE L1 5761 5951 -219 232 184 0 0 chr1 174207495 174207533 -68456820 + L1ME3 LINE L1 6044 6081 -81 207 0 0 0 chr1 174208639 174208662 -68455691 + (TG)n Simple_repeat Simple_repeat 2 24 0 203 340 113 21 chr1 174208928 174209069 -68455284 + MIR SINE MIR 83 236 -26 331 366 32 0 chr1 174209082 174209303 -68455050 + L1ME3A LINE L1 5729 5956 -214 24 32 0 0 chr1 174209485 174209516 -68454837 + AT_rich Low_complexity Low_complexity 1 31 0 1343 209 49 11 chr1 174209675 174210162 -68454191 - MER34 LTR ERV1 0 542 11 193 141 313 0 chr1 174211601 174211665 -68452688 - MIR3 SINE MIR -9 199 116 2217 118 0 13 chr1 174211955 174212269 -68452084 + AluSx SINE Alu 1 310 -2 536 266 74 43 chr1 174214188 174214426 -68449927 - MIR SINE MIR -16 246 1 25 65 0 0 chr1 174214944 174214990 -68449363 + AT_rich Low_complexity Low_complexity 1 46 0 1088 159 154 19 chr1 174215129 174215337 -68449016 + MER46A DNA MER2_type 1 236 0 2139 126 3 3 chr1 174215534 174215835 -68448518 - AluSx SINE Alu -11 301 1 2376 99 0 0 chr1 174216988 174217292 -68447061 + AluSg SINE Alu 1 304 -6 190 278 0 93 chr1 174217296 174217350 -68447003 - L2 LINE L2 -23 3290 3242 21 0 0 0 chr1 174218130 174218151 -68446202 + AT_rich Low_complexity Low_complexity 1 21 0 2223 117 0 3 chr1 174218880 174219189 -68445164 + AluSx SINE Alu 1 308 -4 443 276 49 16 chr1 174220698 174220821 -68443532 + L2 LINE L2 3146 3272 0 299 260 96 48 chr1 174220988 174221134 -68443219 + MIR SINE MIR 8 160 -102 2082 133 0 20 chr1 174221662 174221963 -68442390 + AluJo SINE Alu 1 295 -17 190 333 50 0 chr1 174222188 174222248 -68442105 - L3b LINE CR1 -9 1574 1512 435 259 16 58 chr1 174222817 174223006 -68441347 + L1MB8 LINE L1 5688 5868 -302 257 300 0 0 chr1 174222965 174223055 -68441298 - L1MC4 LINE L1 -1339 6703 6614 * 2379 99 3 0 chr1 174223223 174223527 -68440826 - AluSx SINE Alu -7 305 1 832 217 44 0 chr1 174223590 174223770 -68440583 - MIR SINE MIR -30 232 45 350 291 109 0 chr1 174229270 174229380 -68434973 - MIR SINE MIR -12 250 129 217 216 0 0 chr1 174230853 174230890 -68433463 + (CA)n Simple_repeat Simple_repeat 2 38 0 299 307 132 55 chr1 174231409 174231826 -68432527 - L2 LINE L2 0 3272 2824 510 242 16 37 chr1 174233512 174233702 -68430651 - Charlie7 DNA MER1_type 0 2612 2427 303 324 10 0 chr1 174233685 174233787 -68430566 - Charlie7 DNA MER1_type -2509 103 1 * 217 171 24 0 chr1 174234699 174234740 -68429613 + (CA)n Simple_repeat Simple_repeat 1 42 0 221 225 0 0 chr1 174234747 174234787 -68429566 + MIR SINE MIR 82 121 -87 522 0 0 0 chr1 174235628 174235686 -68428667 + (CA)n Simple_repeat Simple_repeat 1 58 0 327 233 92 9 chr1 174236732 174236871 -68427482 + L1ME4a LINE L1 5811 5961 -208 234 128 0 0 chr1 174237921 174237960 -68426393 + (CA)n Simple_repeat Simple_repeat 2 40 0 485 234 80 15 chr1 174238357 174238526 -68425827 + MER5B DNA MER1_type 4 188 -1 424 251 67 13 chr1 174240420 174240583 -68423770 - MIR SINE MIR -63 145 26 472 163 20 10 chr1 174242297 174242395 -68421958 + L1ME1 LINE L1 4590 4688 -1458 1325 222 52 6 chr1 174242516 174242863 -68421490 + L1ME1 LINE L1 4898 5260 -886 2766 214 92 29 chr1 174242871 174243625 -68420728 + L1ME1 LINE L1 5376 6334 0 2056 118 3 10 chr1 174243758 174244064 -68420289 - AluSx SINE Alu -8 304 1 264 186 0 0 chr1 174244169 174244228 -68420125 + (GTATG)n Simple_repeat Simple_repeat 2 60 0 2066 158 68 3 chr1 174244247 174244601 -68419752 + MLT1B LTR MaLR 1 377 -13 357 274 103 8 chr1 174245046 174245163 -68419190 - L1MC4 LINE L1 -1340 6702 6575 242 281 79 0 chr1 174245508 174245622 -68418731 + L1ME4a LINE L1 5969 6091 -30 379 232 146 73 chr1 174247060 174247224 -68417129 + L1ME4a LINE L1 5810 5985 -136 1438 163 118 13 chr1 174247451 174247757 -68416596 + MER58B DNA MER1_type 4 341 0 2355 57 3 7 chr1 174247925 174248224 -68416129 + AluY SINE Alu 1 298 -13 1115 151 16 0 chr1 174249193 174249379 -68414974 + L1PB3 LINE L1 5966 6154 0 1648 103 179 0 chr1 174249807 174250059 -68414294 + AluSx SINE Alu 1 297 -5 609 113 191 0 chr1 174250121 174250236 -68414117 + MER44D DNA MER2_type 2 408 -201 1204 269 50 67 chr1 174300832 174301275 -68363078 - MLT1H1 LTR MaLR -2 553 104 22628 37 6 0 chr1 174301275 174304807 -68359546 + L1PA4 LINE L1 2618 6155 0 1204 269 50 67 chr1 174304807 174304859 -68359494 - MLT1H1 LTR MaLR -451 104 65 2489 63 0 3 chr1 174304859 174305161 -68359192 - AluY SINE Alu -10 301 1 1204 269 50 67 chr1 174305161 174305203 -68359150 - MLT1H1 LTR MaLR -490 65 24 390 190 51 0 chr1 174305272 174305351 -68359002 + MIR SINE MIR 12 94 -168 2070 219 108 52 chr1 174305370 174305646 -68358707 - L1ME1 LINE L1 -4 6162 5903 2062 124 10 10 chr1 174305646 174305952 -68358401 - AluJo SINE Alu -6 306 1 2070 219 108 52 chr1 174305952 174306189 -68358164 - L1ME1 LINE L1 -263 5903 5681 1980 163 3 3 chr1 174306189 174306495 -68357858 - 7SLRNA srpRNA srpRNA -1 319 14 2070 219 108 52 chr1 174306495 174306796 -68357557 - L1ME1 LINE L1 -485 5681 5310 430 202 32 0 chr1 174306797 174306891 -68357462 + MIR SINE MIR 137 233 -29 1652 235 15 66 chr1 174306891 174307423 -68356930 - MLT1D LTR MaLR 0 505 1 262 333 31 21 chr1 174307476 174307572 -68356781 + MIR SINE MIR 19 115 -147 3501 169 16 2 chr1 174307814 174308434 -68355919 - L1MB5 LINE L1 -69 6105 5477 2064 196 53 34 chr1 174308594 174309088 -68355265 - MLT1D LTR MaLR 0 505 3 1082 150 46 0 chr1 174310064 174310237 -68354116 - AluSg/x SINE Alu -10 302 122 1938 153 0 13 chr1 174310455 174310762 -68353591 + AluJb SINE Alu 1 303 -9 195 299 0 94 chr1 174310763 174310890 -68353463 - L2 LINE L2 -16 3297 3183 300 346 118 24 chr1 174310931 174311142 -68353211 - MIR SINE MIR -23 239 9 250 344 11 21 chr1 174311151 174311244 -68353109 + MIR SINE MIR 60 151 -57 426 20 0 0 chr1 174312467 174312518 -68351835 + (CA)n Simple_repeat Simple_repeat 2 52 0 * 924 117 0 0 chr1 174312517 174312662 -68351691 + (GA)n Simple_repeat Simple_repeat 2 146 0 591 240 14 41 chr1 174312748 174312894 -68351459 - L2 LINE L2 -1 3312 3171 979 273 86 18 chr1 174313022 174313589 -68350764 - L1ME1 LINE L1 -1329 4817 4212 483 193 0 0 chr1 174313594 174313677 -68350676 + MER20 DNA MER1_type 1 83 -136 335 388 0 0 chr1 174313696 174313817 -68350536 - L2 LINE L2 -3 3269 3149 1763 181 0 16 chr1 174314004 174314319 -68350034 + AluJb SINE Alu 1 310 -2 3043 160 45 2 chr1 174314555 174315110 -68349243 + L1MC3 LINE L1 7180 7758 -27 2005 206 90 7 chr1 174315111 174315576 -68348777 - MLT1D LTR MaLR -1 504 1 359 338 29 0 chr1 174316118 174316257 -68348096 + MIR SINE MIR 63 205 -57 32 75 0 0 chr1 174316310 174316377 -68347976 + AT_rich Low_complexity Low_complexity 1 67 0 337 292 104 42 chr1 174316465 174317033 -68347320 + L1ME4a LINE L1 3864 4466 -1680 237 259 62 27 chr1 174317798 174317910 -68346443 + L1P LINE L1 5279 5394 -757 364 298 131 20 chr1 174318087 174318332 -68346021 + L1ME4a LINE L1 5632 5903 -218 33 66 0 0 chr1 174319034 174319095 -68345258 + AT_rich Low_complexity Low_complexity 1 61 0 2150 76 0 0 chr1 174319256 174319555 -68344798 - AluY SINE Alu 0 317 19 785 89 0 0 chr1 174319930 174320031 -68344322 - L1PA8A LINE L1 -27 6104 6004 697 270 115 11 chr1 174320035 174320305 -68344048 - L2 LINE L2 -3 3310 3013 733 239 81 45 chr1 174320457 174320767 -68343586 + HAL1 LINE L1 1464 1784 -723 227 266 62 0 chr1 174321789 174321853 -68342500 + MIR SINE MIR 121 188 -74 249 57 0 0 chr1 174321899 174321934 -68342419 + (ATG)n Simple_repeat Simple_repeat 3 37 0 352 311 38 9 chr1 174322011 174322117 -68342236 - MIR3 SINE MIR -8 200 92 213 268 18 0 chr1 174322987 174323043 -68341310 + CT-rich Low_complexity Low_complexity 3 59 0 300 53 0 0 chr1 174324057 174324095 -68340258 + (TC)n Simple_repeat Simple_repeat 2 39 0 711 93 47 0 chr1 174324096 174324203 -68340150 - HY1 scRNA scRNA 0 112 1 5522 166 12 21 chr1 174326477 174327656 -68336697 + L1MA6 LINE L1 5117 6288 -12 16180 186 39 49 chr1 174327733 174329947 -68334406 + L1MA1 LINE L1 15 2249 -5472 2815 10 0 0 chr1 174329947 174330252 -68334101 - AluYa5 SINE Alu -2 309 5 16180 186 39 49 chr1 174330252 174330352 -68334001 + L1MA1 LINE L1 2249 2348 -5373 503 204 0 0 chr1 174330352 174330450 -68333903 + AluSp/q SINE Alu 216 313 0 16180 186 39 49 chr1 174330450 174330523 -68333830 + L1MA1 LINE L1 2348 2420 -5301 2131 127 0 19 chr1 174330523 174330838 -68333515 + AluSx SINE Alu 2 310 -2 16180 186 39 49 chr1 174330838 174335915 -68328438 + L1MA1 LINE L1 2420 7496 -225 1484 101 13 0 chr1 174336020 174336248 -68328105 + L1MA1 LINE L1 7486 7716 -5 21 0 0 0 chr1 174336248 174336269 -68328084 + AT_rich Low_complexity Low_complexity 1 21 0 859 302 102 27 chr1 174336269 174337018 -68327335 + L1MEc LINE L1 1012 1816 -4580 411 317 16 62 chr1 174337589 174337832 -68326521 - L1MEd LINE L1 -5117 1255 1024 297 264 168 0 chr1 174337817 174337942 -68326411 - L1MEd LINE L1 -4830 1552 1309 * 24 32 0 0 chr1 174337981 174338012 -68326341 + AT_rich Low_complexity Low_complexity 1 31 0 309 329 110 30 chr1 174338016 174338180 -68326173 - L1MEd LINE L1 -5430 942 766 1106 241 37 0 chr1 174338800 174339016 -68325337 + MER58A DNA MER1_type 1 224 0 1812 125 75 0 chr1 174339204 174339485 -68324868 + AluSx SINE Alu 1 302 -10 326 289 91 33 chr1 174341591 174341712 -68322641 - L2 LINE L2 -6 3266 3139 601 256 100 57 chr1 174341924 174342205 -68322148 + MLT1L LTR MaLR 8 300 -315 550 220 203 0 chr1 174343540 174343717 -68320636 + MIR SINE MIR 50 262 0 545 239 107 6 chr1 174343795 174343887 -68320466 - MIR SINE MIR 0 262 181 1954 100 41 17 chr1 174343887 174344199 -68320154 - AluSx SINE Alu 0 319 1 545 239 107 6 chr1 174344199 174344263 -68320090 - MIR SINE MIR -81 181 88 2153 91 0 4 chr1 174346983 174347259 -68317094 - AluY SINE Alu -2 309 35 214 250 0 0 chr1 174349028 174349076 -68315277 - L2 LINE L2 -6 3266 3219 2311 145 22 49 chr1 174349280 174349645 -68314708 - LTR18A LTR ERVL -2 355 1 509 210 10 0 chr1 174349766 174349866 -68314487 - HERVL18 LTR ERVL -1 6046 5946 2341 97 53 9 chr1 174349947 174350288 -68314065 - MLT2A1 LTR ERVL 0 444 89 3636 152 2 24 chr1 174350291 174350870 -68313483 - HERVL18 LTR ERVL -2543 3504 2939 2102 210 22 3 chr1 174350856 174351213 -68313140 - HERVL18 LTR ERVL -2963 3084 2721 * 1277 120 85 2 chr1 174351214 174351468 -68312885 - HERVL18 LTR ERVL -3596 2451 2119 260 0 61 0 chr1 174351467 174351500 -68312853 - HERVL18 LTR ERVL -4237 1810 1776 * 2427 185 38 17 chr1 174351498 174352400 -68311953 - HERVL18 LTR ERVL -4433 1614 9 2194 125 8 115 chr1 174352426 174352825 -68311528 - LTR18A LTR ERVL 0 357 2 440 204 46 28 chr1 174352975 174353083 -68311270 - MER5B DNA MER1_type -63 115 6 406 303 8 0 chr1 174353939 174354061 -68310292 - MIR3 SINE MIR -19 189 67 360 244 0 0 chr1 174354061 174354147 -68310206 - L3b LINE CR1 -382 1201 1116 324 256 196 30 chr1 174355878 174356077 -68308276 - MIR SINE MIR -11 251 20 245 278 200 22 chr1 174356745 174356835 -68307518 + MIR SINE MIR 46 151 -111 23 0 0 0 chr1 174356908 174356931 -68307422 + AT_rich Low_complexity Low_complexity 1 23 0 2686 94 43 14 chr1 174356931 174357302 -68307051 - L1PA16 LINE L1 -9 6157 5776 1246 245 68 40 chr1 174357302 174357578 -68306775 + L2 LINE L2 2690 2957 -356 2215 80 48 0 chr1 174357578 174357867 -68306486 - AluSg SINE Alu -7 303 1 1246 245 68 40 chr1 174357867 174358201 -68306152 + L2 LINE L2 2957 3309 -4 1841 153 3 7 chr1 174358837 174359125 -68305228 - AluJo SINE Alu -25 287 1 28 0 0 0 chr1 174360258 174360286 -68304067 + AT_rich Low_complexity Low_complexity 1 28 0 5424 160 26 7 chr1 174360286 174361483 -68302870 + L1MB1 LINE L1 4961 6168 0 277 198 110 0 chr1 174361492 174361583 -68302770 - L1ME4a LINE L1 -3 6118 6018 799 285 14 9 chr1 174361670 174361891 -68302462 - MIR SINE MIR -13 249 28 308 249 161 49 chr1 174361901 174362106 -68302247 - L1MC4a LINE L1 -1638 6170 5943 6288 157 19 11 chr1 174362117 174362604 -68301749 - L1MC1 LINE L1 -1 6332 5850 2611 128 37 28 chr1 174362604 174363032 -68301321 - MSTB1 LTR MaLR 0 432 1 6288 157 19 11 chr1 174363032 174363605 -68300748 - L1MC1 LINE L1 -483 5850 5264 7184 124 19 4 chr1 174363613 174365403 -68298950 - L1MA3 LINE L1 0 6305 4488 237 261 34 11 chr1 174365390 174365478 -68298875 - L1MC1 LINE L1 -871 5275 5186 * 947 266 30 3 chr1 174365478 174365775 -68298578 - L1MC4a LINE L1 -1857 5951 5647 491 291 149 88 chr1 174365954 174366329 -68298024 + L2 LINE L2 2866 3263 -9 2477 51 7 0 chr1 174366407 174366700 -68297653 - AluY SINE Alu -16 295 1 1448 18 0 12 chr1 174367679 174367844 -68296509 - L1PA2 LINE L1 0 6155 5993 270 278 143 16 chr1 174368150 174368276 -68296077 + MIR SINE MIR 2 143 -119 190 387 11 11 chr1 174368372 174368465 -68295888 - L2 LINE L2 -81 3191 3099 675 274 192 34 chr1 174368781 174368848 -68295505 + HAL1 LINE L1 959 1014 -1493 1007 238 107 59 chr1 174368848 174369289 -68295064 - LTR16B LTR ERVL -2 462 1 675 274 192 34 chr1 174369289 174369721 -68294632 + HAL1 LINE L1 1014 1537 -970 889 187 12 18 chr1 174369726 174369897 -68294456 + AluJb SINE Alu 112 281 -31 216 0 0 0 chr1 174369900 174369924 -68294429 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 462 289 203 7 chr1 174369929 174370234 -68294119 + HAL1 LINE L1 1544 1908 -599 959 128 0 0 chr1 174370293 174370426 -68293927 + FLAM_C SINE Alu 1 133 0 281 239 0 0 chr1 174370660 174370727 -68293626 + HAL1 LINE L1 2082 2148 -359 316 332 171 24 chr1 174370934 174371274 -68293079 + HAL1 LINE L1 2118 2507 0 2245 123 0 0 chr1 174371290 174371600 -68292753 + AluSx SINE Alu 1 310 -2 189 269 58 0 chr1 174371656 174371708 -68292645 + L2 LINE L2 3245 3299 -14 189 178 0 0 chr1 174371844 174371889 -68292464 + CT-rich Low_complexity Low_complexity 1 45 0 366 345 178 0 chr1 174372536 174372733 -68291620 - MIR SINE MIR -10 252 21 21 0 0 0 chr1 174373235 174373256 -68291097 + AT_rich Low_complexity Low_complexity 1 21 0 14085 109 53 75 chr1 174373566 174373681 -68290672 - Tigger1 DNA MER2_type -1 2417 2301 2289 107 0 0 chr1 174373681 174373980 -68290373 + AluSx SINE Alu 1 299 -13 14085 109 53 75 chr1 174373980 174374128 -68290225 - Tigger1 DNA MER2_type -117 2301 2151 995 189 6 6 chr1 174374128 174374292 -68290061 - FRAM SINE Alu 0 166 3 14085 109 53 75 chr1 174374292 174376472 -68287881 - Tigger1 DNA MER2_type -267 2151 26 671 254 50 14 chr1 174376674 174376894 -68287459 - L1ME1 LINE L1 -6 6160 5933 606 270 92 36 chr1 174376907 174377518 -68286835 - L1ME LINE L1 -4837 1276 666 407 375 35 61 chr1 174377652 174378047 -68286306 - L1ME LINE L1 -5702 694 310 392 287 24 36 chr1 174378048 174378215 -68286138 - L1ME LINE L1 -6159 237 73 440 314 54 64 chr1 174378432 174378728 -68285625 + MLT1K LTR MaLR 66 358 -230 2281 112 7 0 chr1 174378875 174379180 -68285173 - AluSg1 SINE Alu -2 307 1 289 250 79 99 chr1 174379571 174379723 -68284630 + MLT1J2 LTR MaLR 3 151 -299 2063 157 0 0 chr1 174379764 174380069 -68284284 + AluJb SINE Alu 1 305 -7 316 290 76 92 chr1 174380229 174380546 -68283807 + HERVL LTR ERVL 1236 1547 -4107 312 287 154 7 chr1 174380709 174380852 -68283501 + HERVL LTR ERVL 1782 1945 -3819 343 314 0 7 chr1 174381244 174381384 -68282969 + LTR67 LTR ERVL 411 549 -8 302 113 0 19 chr1 174381997 174382050 -68282303 + (CA)n Simple_repeat Simple_repeat 2 53 0 2319 104 0 0 chr1 174382646 174382945 -68281408 + AluSx SINE Alu 1 299 -13 495 345 148 21 chr1 174383092 174383901 -68280452 - L2 LINE L2 -363 2951 2040 353 80 0 4 chr1 174383904 174383964 -68280389 + AluSp/q SINE Alu 251 303 0 282 388 0 36 chr1 174385224 174385389 -68278964 + L3 LINE CR1 1289 1447 -130 370 259 58 69 chr1 174385592 174385766 -68278587 - L2 LINE L2 -39 3233 3062 207 309 10 62 chr1 174385802 174385899 -68278454 - L2 LINE L2 -208 3064 2973 989 255 174 10 chr1 174386398 174386813 -68277540 - MLT1G1 LTR MaLR 0 595 113 252 0 0 0 chr1 174386834 174386862 -68277491 + (TG)n Simple_repeat Simple_repeat 2 29 0 558 217 0 0 chr1 174386864 174386970 -68277383 - L1MA9 LINE L1 -39 6273 6168 1886 118 31 3 chr1 174386972 174387294 -68277059 - L1 LINE L1 -1561 4585 4255 2902 72 28 0 chr1 174387301 174387664 -68276689 - L1PA8 LINE L1 -6 6166 5794 395 248 60 34 chr1 174387664 174387781 -68276572 - MLT1G1 LTR MaLR -475 120 1 578 250 103 42 chr1 174387990 174388245 -68276108 + MIR SINE MIR 2 262 0 274 287 9 43 chr1 174388311 174388426 -68275927 - Charlie7 DNA MER1_type 0 2612 2502 283 202 24 0 chr1 174388646 174388730 -68275623 + GA-rich Low_complexity Low_complexity 1 86 0 976 227 41 8 chr1 174389870 174390112 -68274241 + LTR33 LTR ERVL 15 264 -257 548 285 13 0 chr1 174390153 174390304 -68274049 + LTR33 LTR ERVL 367 519 -2 2123 192 35 47 chr1 174390367 174390878 -68273475 + MLT1D LTR MaLR 1 505 0 796 221 64 52 chr1 174391498 174391916 -68272437 + LTR33 LTR ERVL 26 519 -2 593 297 24 14 chr1 174391924 174392136 -68272217 - MIR SINE MIR -1 261 48 185 282 138 31 chr1 174392153 174392283 -68272070 + MIR SINE MIR 3 147 -61 2817 84 0 16 chr1 174394247 174394617 -68269736 + THE1B LTR MaLR 1 364 0 2062 123 0 0 chr1 174395399 174395683 -68268670 + AluSx SINE Alu 19 302 -10 2464 94 0 0 chr1 174395703 174396011 -68268342 + AluY SINE Alu 1 308 -3 196 258 32 32 chr1 174397390 174397452 -68266901 - L2 LINE L2 -94 3178 3117 21 0 0 0 chr1 174398027 174398048 -68266305 + AT_rich Low_complexity Low_complexity 1 21 0 377 345 85 29 chr1 174398468 174399099 -68265254 + L2 LINE L2 2366 3050 -222 1726 161 20 33 chr1 174399126 174399430 -68264923 - AluJo SINE Alu -12 300 1 757 196 101 0 chr1 174399580 174399738 -68264615 + LTR50 LTR ERVL 97 270 -525 262 146 195 37 chr1 174399765 174399847 -68264506 + LTR50 LTR ERVL 340 434 -361 * 546 224 109 12 chr1 174399845 174400010 -68264343 + LTR50 LTR ERVL 615 795 0 409 279 8 8 chr1 174400761 174400890 -68263463 + MIR SINE MIR 20 148 -114 889 246 40 4 chr1 174400891 174401143 -68263210 - MIR SINE MIR 0 262 2 1807 162 21 63 chr1 174401171 174401554 -68262799 - MLT1A2 LTR MaLR -6 368 2 1651 121 77 29 chr1 174401626 174401898 -68262455 + AluSx SINE Alu 1 285 -27 361 332 100 0 chr1 174402233 174402423 -68261930 + L2 LINE L2 3104 3312 -1 24 53 0 0 chr1 174402899 174402937 -68261416 + AT_rich Low_complexity Low_complexity 1 38 0 2258 73 76 0 chr1 174402971 174403259 -68261094 + AluY SINE Alu 2 311 0 2320 96 0 16 chr1 174403343 174403646 -68260707 + AluSg SINE Alu 1 298 -12 43966 45 6 3 chr1 174404511 174408119 -68256234 + L1PA4 LINE L1 3 3639 -2516 2453 80 0 0 chr1 174408119 174408420 -68255933 + AluY SINE Alu 2 302 -9 43966 45 6 3 chr1 174408420 174410943 -68253410 + L1PA4 LINE L1 3639 6153 -2 250 260 154 0 chr1 174411267 174411371 -68252982 + MIR SINE MIR 71 190 -72 188 161 0 0 chr1 174412157 174412188 -68252165 + L3b LINE CR1 1292 1322 -261 2236 107 7 7 chr1 174412453 174412752 -68251601 + AluSx SINE Alu 1 299 -13 2024 142 3 10 chr1 174412901 174413211 -68251142 - AluJb SINE Alu -4 308 1 322 264 56 3 chr1 174413365 174413483 -68250870 - MIR SINE MIR -63 145 27 338 340 31 31 chr1 174415175 174415334 -68249019 - L2 LINE L2 -7 3265 3107 792 189 24 73 chr1 174416037 174416243 -68248110 + MER20B DNA MER1_type 4 199 -20 2760 96 98 104 chr1 174416389 174416918 -68247435 + MER1A DNA MER1_type 1 526 -1 1949 218 104 40 chr1 174417780 174418299 -68246054 - MLT2B3 LTR ERVL 0 554 3 313 186 103 21 chr1 174418785 174418882 -68245471 - MIR SINE MIR -35 227 123 180 0 0 0 chr1 174418920 174418940 -68245413 + (TTG)n Simple_repeat Simple_repeat 2 21 0 192 189 0 60 chr1 174421489 174421534 -68242819 - L2 LINE L2 -29 3284 3203 548 287 55 46 chr1 174421929 174422274 -68242079 - L1ME3A LINE L1 -207 5963 5616 548 256 100 37 chr1 174422327 174422857 -68241496 - L1ME3A LINE L1 -689 5489 4927 1926 160 25 0 chr1 174422918 174423376 -68240977 + MLT2B1 LTR ERVL 1 520 0 274 184 155 10 chr1 174423381 174423484 -68240869 - L1ME3A LINE L1 -1399 4747 4630 498 258 31 18 chr1 174423588 174423751 -68240602 - MIR SINE MIR -37 225 61 187 359 0 33 chr1 174424484 174424576 -68239777 + MIR SINE MIR 58 146 -62 2666 43 0 0 chr1 174425064 174425366 -68238987 + AluY SINE Alu 1 302 -9 720 111 0 0 chr1 174425366 174425474 -68238879 + (TA)n Simple_repeat Simple_repeat 2 109 0 2367 94 0 3 chr1 174426003 174426312 -68238041 + AluSg SINE Alu 1 308 -2 237 351 35 23 chr1 174426722 174426896 -68237457 + MIR SINE MIR 48 223 -39 225 0 0 0 chr1 174427481 174427506 -68236847 + (CA)n Simple_repeat Simple_repeat 2 26 0 528 208 9 0 chr1 174427576 174427682 -68236671 - AluJb SINE Alu 0 312 206 1668 169 0 0 chr1 174428252 174428513 -68235840 + AluJo SINE Alu 37 297 -15 258 197 106 56 chr1 174429076 174429218 -68235135 - MER20B DNA MER1_type -11 772 624 357 261 174 14 chr1 174429459 174429597 -68234756 - MLT1I LTR MaLR 0 450 278 264 238 113 0 chr1 174429845 174429925 -68234428 - MER117 DNA MER1_type -107 90 2 2122 107 38 0 chr1 174430112 174430420 -68233933 + AluSx SINE Alu 1 312 0 337 81 16 81 chr1 174431807 174431869 -68232484 - MER31B LTR ERV1 -408 58 1 1633 217 56 22 chr1 174431908 174432318 -68232035 + MER31A LTR ERV1 62 485 0 376 243 108 0 chr1 174432391 174432502 -68231851 + MIR SINE MIR 84 206 -56 351 307 111 18 chr1 174433972 174434197 -68230156 + L2 LINE L2 2597 2842 -472 232 281 56 11 chr1 174434570 174434659 -68229694 - MIR SINE MIR -64 144 52 307 267 0 0 chr1 174434779 174434865 -68229488 + L1MC/D LINE L1 5215 5300 -846 285 264 24 128 chr1 174434998 174435168 -68229185 + L1MC/D LINE L1 5482 5611 -510 2099 207 25 47 chr1 174435168 174435684 -68228669 - MLT1D LTR MaLR 0 505 1 285 264 24 128 chr1 174435684 174435801 -68228552 + L1MC/D LINE L1 5611 5739 -382 1062 232 131 66 chr1 174435861 174436308 -68228045 + MLT2B1 LTR ERVL 1 417 -103 207 0 0 0 chr1 174436308 174436331 -68228022 + (TC)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chr1 174436330 174436351 -68228002 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 1062 232 131 66 chr1 174436331 174436391 -68227962 + MLT2B1 LTR ERVL 417 520 0 2832 122 29 7 chr1 174436728 174437147 -68227206 + MSTA LTR MaLR 1 428 0 289 330 148 49 chr1 174438128 174438452 -68225901 - L2 LINE L2 0 3272 2917 1644 270 100 17 chr1 174438510 174438991 -68225362 + MLT1G1 LTR MaLR 75 595 0 845 165 0 0 chr1 174439026 174439159 -68225194 + FRAM SINE Alu 14 146 -30 203 56 56 0 chr1 174439159 174439195 -68225158 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 450 294 53 27 chr1 174440446 174440646 -68223707 + MIR3 SINE MIR 6 208 0 202 317 0 0 chr1 174441059 174441100 -68223253 - L2 LINE L2 -22 3250 3210 1446 180 27 8 chr1 174441166 174441427 -68222926 + AluJo SINE Alu 1 266 -46 563 170 0 57 chr1 174441428 174441569 -68222784 + LTR37A LTR ERV1 294 426 0 268 345 185 19 chr1 174442795 174443227 -68221126 + L2 LINE L2 2143 2646 -668 181 301 234 48 chr1 174443374 174443583 -68220770 + L2 LINE L2 2835 3082 -190 6450 93 31 0 chr1 174443681 174444349 -68220004 - L1PA8A LINE L1 -2 6129 5460 2376 81 0 23 chr1 174444349 174444659 -68219694 - AluY SINE Alu -8 303 1 6450 93 31 0 chr1 174444659 174444922 -68219431 - L1PA8A LINE L1 -671 5460 5207 186 281 0 31 chr1 174446848 174446912 -68217441 - MER5B DNA MER1_type -26 152 91 * 260 288 121 38 chr1 174446855 174446987 -68217366 + MER5A DNA MER1_type 45 187 -2 233 274 158 0 chr1 174447120 174447215 -68217138 - MER5A DNA MER1_type -78 111 2 2117 148 0 0 chr1 174447289 174447599 -68216754 - AluJo SINE Alu -1 311 2 240 336 27 27 chr1 174447945 174448055 -68216298 - MIR SINE MIR -149 113 4 630 63 13 0 chr1 174449872 174449951 -68214402 - MADE1 DNA Mariner 0 80 1 244 214 14 57 chr1 174450682 174450752 -68213601 - MER103 DNA DNA -9 157 91 354 80 0 0 chr1 174450819 174450869 -68213484 + (TG)n Simple_repeat Simple_repeat 2 51 0 423 276 60 34 chr1 174451225 174451490 -68212863 - L1MEc LINE L1 -4708 1602 1331 2409 86 0 51 chr1 174451547 174451898 -68212455 - MER75 DNA T2_type -1 513 181 2698 177 44 96 chr1 174451898 174452648 -68211705 - MER50 LTR ERV1 -23 711 1 1313 138 0 0 chr1 174452648 174452832 -68211521 - MER75 DNA T2_type -329 185 2 1295 274 90 22 chr1 174452851 174453442 -68210911 - L1MEc LINE L1 -4908 1211 581 304 285 146 7 chr1 174453464 174453608 -68210745 + L1M4 LINE L1 4759 4922 -1224 250 155 134 41 chr1 174454154 174454251 -68210102 - L1M4 LINE L1 -798 5348 5243 1293 212 105 126 chr1 174454274 174454466 -68209887 + L1MC5 LINE L1 6696 6890 -1071 261 83 0 0 chr1 174454466 174454502 -68209851 + (TTCTG)n Simple_repeat Simple_repeat 3 38 0 180 111 0 0 chr1 174454509 174454536 -68209817 + (CTACT)n Simple_repeat Simple_repeat 5 31 0 1293 212 105 126 chr1 174454536 174454661 -68209692 + L1MC5 LINE L1 6896 7022 -939 1453 179 4 29 chr1 174454661 174454935 -68209418 + AluJo SINE Alu 1 267 -45 1293 212 105 126 chr1 174454935 174454957 -68209396 + L1MC5 LINE L1 7022 7043 -918 189 0 0 0 chr1 174454957 174454978 -68209375 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1293 212 105 126 chr1 174454978 174455085 -68209268 + L1MC5 LINE L1 7043 7151 -810 3273 43 0 3 chr1 174455085 174455461 -68208892 + L1PA5 LINE L1 5780 6154 0 1293 212 105 126 chr1 174455461 174455744 -68208609 + L1MC5 LINE L1 7151 7421 -540 2495 186 76 32 chr1 174455766 174456244 -68208109 - L1ME2 LINE L1 -242 5922 5386 2161 110 3 0 chr1 174456244 174456546 -68207807 - AluSx SINE Alu 0 303 1 2495 186 76 32 chr1 174456546 174456934 -68207419 - L1ME2 LINE L1 -778 5386 5016 437 297 29 0 chr1 174456918 174457093 -68207260 - L1ME2 LINE L1 -2798 3348 3169 * 1549 244 74 16 chr1 174457086 174457573 -68206780 - L1ME2 LINE L1 -3360 2786 2272 * 4193 165 27 10 chr1 174457570 174458351 -68206002 - L1MB7 LINE L1 0 6184 5391 929 291 30 50 chr1 174458714 174459113 -68205240 - LTR16C LTR ERVL -3 488 98 2197 136 17 45 chr1 174459349 174459503 -68204850 + MER2 DNA MER2_type 1 158 -186 1770 188 0 0 chr1 174459503 174459795 -68204558 - AluJo SINE Alu -20 292 1 2197 136 17 45 chr1 174459795 174459994 -68204359 + MER2 DNA MER2_type 158 344 0 21 0 0 0 chr1 174460638 174460659 -68203694 + AT_rich Low_complexity Low_complexity 1 21 0 1366 279 95 50 chr1 174460733 174461544 -68202809 - L2 LINE L2 -39 3274 2424 2507 77 0 0 chr1 174461544 174461844 -68202509 + AluSx SINE Alu 1 300 -12 1366 279 95 50 chr1 174461844 174461959 -68202394 - L2 LINE L2 -889 2424 2316 1010 182 10 21 chr1 174461959 174462151 -68202202 + MLT1A1 LTR MaLR 1 190 -175 276 126 9 216 chr1 174462151 174462262 -68202091 + L1PA16 LINE L1 6079 6166 0 219 241 69 69 chr1 174462274 174462361 -68201992 - L2 LINE L2 -1344 1970 1884 2396 42 56 0 chr1 174462404 174462688 -68201665 - AluY SINE Alu -11 300 1 841 160 0 0 chr1 174462716 174462841 -68201512 + FLAM_C SINE Alu 3 127 -16 336 261 109 0 chr1 174463006 174463144 -68201209 + MIR SINE MIR 110 262 0 582 294 7 7 chr1 174464195 174464338 -68200015 - MIR SINE MIR -108 154 12 4234 165 49 57 chr1 174464373 174464701 -68199652 - L1MB8 LINE L1 -55 6123 5794 2425 60 0 0 chr1 174464701 174465003 -68199350 + AluY SINE Alu 1 302 0 4234 165 49 57 chr1 174465003 174465502 -68198851 - L1MB8 LINE L1 -384 5794 5292 2460 77 0 0 chr1 174465502 174465800 -68198553 + AluY SINE Alu 1 298 -13 4234 165 49 57 chr1 174465800 174465879 -68198474 - L1MB8 LINE L1 -886 5292 5212 1748 153 47 23 chr1 174465879 174466180 -68198173 - AluSx SINE Alu -4 308 1 4234 165 49 57 chr1 174466180 174466205 -68198148 - L1MB8 LINE L1 -966 5212 5188 1515 180 121 12 chr1 174466213 174466535 -68197818 - MLT1A1 LTR MaLR 0 365 9 189 94 0 0 chr1 174466589 174466621 -68197732 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 524 295 125 49 chr1 174467779 174467919 -68196434 + HAL1 LINE L1 995 1123 -1384 501 17 0 0 chr1 174467919 174467977 -68196376 + (GA)n Simple_repeat Simple_repeat 2 59 0 524 295 125 49 chr1 174467977 174468098 -68196255 + HAL1 LINE L1 1123 1233 -1274 821 85 19 0 chr1 174468098 174468204 -68196149 + HY1 scRNA scRNA 1 108 -4 227 30 0 30 chr1 174468210 174468243 -68196110 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 524 295 125 49 chr1 174468243 174468563 -68195790 + HAL1 LINE L1 1237 1629 -878 21 0 0 0 chr1 174468895 174468916 -68195437 + AT_rich Low_complexity Low_complexity 1 21 0 455 281 0 31 chr1 174469038 174469166 -68195187 + L2 LINE L2 3189 3312 -1 21 36 0 0 chr1 174469186 174469214 -68195139 + AT_rich Low_complexity Low_complexity 1 28 0 9334 146 15 31 chr1 174469463 174469576 -68194777 + L1MA3 LINE L1 3686 3799 -2506 2121 124 0 0 chr1 174469576 174469858 -68194495 + AluSg SINE Alu 7 288 -22 9334 146 15 31 chr1 174469858 174471721 -68192632 + L1MA3 LINE L1 3799 5607 -698 2462 83 0 0 chr1 174471721 174472023 -68192330 + AluY SINE Alu 1 302 -9 9334 146 15 31 chr1 174472023 174472712 -68191641 + L1MA3 LINE L1 5607 6305 0 305 301 71 9 chr1 174473214 174473327 -68191026 - MIR SINE MIR -115 147 28 2485 84 0 0 chr1 174474104 174474414 -68189939 - AluY SINE Alu -1 310 1 1162 197 29 8 chr1 174474570 174474814 -68189539 - L1MB3 LINE L1 -2 6181 5933 557 195 54 103 chr1 174474848 174475033 -68189320 + LTR41 LTR ERVL 1 176 -597 271 173 82 73 chr1 174475491 174475601 -68188752 + LTR41 LTR ERVL 657 767 -6 1834 156 16 13 chr1 174476452 174476759 -68187594 - AluJb SINE Alu -4 308 1 4166 148 13 24 chr1 174476789 174476924 -68187429 - MER50 LTR ERV1 -32 702 567 2574 59 3 0 chr1 174476924 174477229 -68187124 + AluY SINE Alu 1 306 -5 4166 148 13 24 chr1 174477229 174477803 -68186550 - MER50 LTR ERV1 -167 567 1 1692 248 81 11 chr1 174478546 174479002 -68185351 + L2 LINE L2 2367 2854 -460 1351 263 42 62 chr1 174479004 174479551 -68184802 + MLT1H LTR MaLR 1 536 -13 988 292 46 46 chr1 174479599 174480010 -68184343 + L2 LINE L2 2899 3309 -4 429 309 91 53 chr1 174480127 174480642 -68183711 + L2 LINE L2 2552 3173 -99 1767 177 182 99 chr1 174481054 174481496 -68182857 - MLT1E1 LTR MaLR 0 654 147 2141 105 51 0 chr1 174481496 174481791 -68182562 + AluSx SINE Alu 1 310 -2 1767 177 182 99 chr1 174481791 174481952 -68182401 - MLT1E1 LTR MaLR -507 147 1 531 252 54 70 chr1 174481963 174482221 -68182132 - MIR SINE MIR 0 262 9 316 314 37 0 chr1 174482260 174482374 -68181979 - MIR SINE MIR -67 141 30 690 284 47 28 chr1 174483142 174483396 -68180957 + LTR33 LTR ERVL 211 469 -52 3583 165 12 94 chr1 174483428 174484181 -68180172 + LTR8 LTR ERV1 1 691 0 925 150 0 0 chr1 174484516 174484649 -68179704 - FLAM_C SINE Alu 0 133 1 269 306 0 10 chr1 174484649 174484742 -68179611 + L1MC5 LINE L1 7335 7426 -535 345 210 91 14 chr1 174484998 174485141 -68179212 + L1ME4a LINE L1 5915 6068 -53 291 303 146 20 chr1 174485215 174485469 -68178884 - L2 LINE L2 -1102 2212 1927 227 191 101 11 chr1 174487468 174487557 -68176796 + AluY SINE Alu 205 301 0 222 286 152 27 chr1 174489105 174489217 -68175136 - L2 LINE L2 -10 3303 3178 337 272 0 0 chr1 174489275 174489356 -68174997 - L2 LINE L2 -4 3309 3229 248 270 67 63 chr1 174489336 174489481 -68174872 + MIR3 SINE MIR 5 154 -65 * 1387 143 5 0 chr1 174489803 174490012 -68174341 - MER2 DNA MER2_type -135 210 1 231 239 14 14 chr1 174490131 174490151 -68174202 + (CATATA)n Simple_repeat Simple_repeat 1 20 -51 2858 147 2 20 chr1 174490151 174490593 -68173760 + Tigger2a DNA MER2_type 1 434 0 231 239 14 14 chr1 174490593 174490643 -68173710 + (CATATA)n Simple_repeat Simple_repeat 19 71 0 381 296 61 0 chr1 174491480 174491595 -68172758 - L2 LINE L2 -4 3268 3147 499 266 125 0 chr1 174491856 174492040 -68172313 - LTR16A1 LTR ERVL -4 453 247 192 77 0 0 chr1 174492051 174492077 -68172276 + (TATG)n Simple_repeat Simple_repeat 4 29 0 472 284 71 13 chr1 174492096 174492251 -68172102 - LTR16A1 LTR ERVL -293 164 1 2623 196 74 34 chr1 174492665 174493262 -68171091 + MLT1E2 LTR MaLR 5 625 -1 1337 281 93 2 chr1 174493784 174494226 -68170127 + L2 LINE L2 2823 3304 -9 1286 271 120 22 chr1 174494357 174494899 -68169454 + MLT1G1 LTR MaLR 1 595 0 655 239 74 49 chr1 174495646 174495889 -68168464 + MIR SINE MIR 2 250 -12 833 262 52 22 chr1 174496728 174496957 -68167396 + MIR SINE MIR 1 236 -26 2054 146 0 0 chr1 174497351 174497668 -68166685 - AluSx SINE Alu 0 312 1 1416 215 48 43 chr1 174497892 174498310 -68166043 - MLT1J1 LTR MaLR 0 446 27 523 261 69 21 chr1 174499197 174499365 -68164988 + MER5A DNA MER1_type 1 186 -3 241 224 0 0 chr1 174499389 174499438 -68164915 + L2 LINE L2 3265 3313 0 1519 177 29 32 chr1 174499547 174499857 -68164496 + AluJo SINE Alu 1 309 -3 1591 167 7 15 chr1 174500053 174500322 -68164031 - AluJo SINE Alu -45 267 1 1794 177 33 0 chr1 174500355 174500709 -68163644 - AluJo SINE Alu 0 365 2 494 314 88 4 chr1 174500905 174501144 -68163209 + L2 LINE L2 2018 2276 -1038 894 148 0 0 chr1 174501781 174501957 -68162396 + FLAM_C SINE Alu 1 176 0 554 222 0 0 chr1 174501959 174502058 -68162295 + AluJb SINE Alu 122 220 -92 216 0 0 0 chr1 174502059 174502083 -68162270 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 470 228 152 33 chr1 174502307 174502491 -68161862 - L2 LINE L2 0 3313 3108 2207 230 41 8 chr1 174502562 174503166 -68161187 + L1ME1 LINE L1 2538 3161 -2985 * 45140 36 1 7 chr1 174503164 174509348 -68155005 + L1PA4 LINE L1 2 6152 -3 7605 210 46 43 chr1 174509338 174510533 -68153820 + L1ME1 LINE L1 3126 4316 -1868 * 2366 152 45 28 chr1 174510533 174510955 -68153398 + Tigger2a DNA MER2_type 3 431 -3 7605 210 46 43 chr1 174510955 174511927 -68152426 + L1ME1 LINE L1 4316 5283 -901 1678 145 37 27 chr1 174511927 174512224 -68152129 + AluJo SINE Alu 11 310 -2 7605 210 46 43 chr1 174512224 174512782 -68151571 + L1ME1 LINE L1 5283 5838 -346 2007 116 0 7 chr1 174512782 174513059 -68151294 + AluSg SINE Alu 1 275 -35 198 0 0 0 chr1 174513063 174513085 -68151268 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 7605 210 46 43 chr1 174513085 174513125 -68151228 + L1ME1 LINE L1 5840 5906 -278 16557 122 49 13 chr1 174513125 174515693 -68148660 - Tigger4(Zombi) DNA MER2_type 0 2731 72 266 95 0 24 chr1 174515686 174515728 -68148625 - Tigger4(Zombi) DNA MER2_type -1012 1719 1679 * 323 188 129 59 chr1 174515698 174515799 -68148554 - Tigger4(Zombi) DNA MER2_type -2622 109 2 1136 254 8 11 chr1 174515799 174516059 -68148294 + L1ME1 LINE L1 5901 6159 -7 416 198 103 26 chr1 174516282 174516398 -68147955 + L2 LINE L2 3188 3312 -1 2567 68 0 0 chr1 174516899 174517208 -68147145 + AluY SINE Alu 1 309 -2 1488 161 3 62 chr1 174517212 174517504 -68146849 - AluJo SINE Alu -37 275 1 396 40 0 0 chr1 174517873 174517923 -68146430 + (CA)n Simple_repeat Simple_repeat 1 50 0 370 346 55 69 chr1 174518216 174518595 -68145758 - L2 LINE L2 -1 3271 2898 482 293 139 28 chr1 174518681 174519005 -68145348 + L2 LINE L2 2954 3313 0 579 210 43 1 chr1 174519176 174519401 -68144952 + ORSL DNA AcHobo 13 275 0 219 354 47 42 chr1 174519765 174519977 -68144376 - L2 LINE L2 -834 2480 2268 427 254 48 8 chr1 174520722 174520848 -68143505 + MIR SINE MIR 122 252 -10 445 269 74 47 chr1 174520941 174521065 -68143288 + MER5A DNA MER1_type 35 165 -24 940 121 15 0 chr1 174521065 174521197 -68143156 - L1PA16 LINE L1 -9 6157 6024 445 269 74 47 chr1 174521197 174521221 -68143132 + MER5A DNA MER1_type 165 187 -2 2222 102 3 0 chr1 174521948 174522233 -68142120 + AluSx SINE Alu 1 286 -26 2447 68 3 0 chr1 174523871 174524165 -68140188 + AluY SINE Alu 1 295 -16 296 240 26 115 chr1 174524569 174524676 -68139677 + L2 LINE L2 3117 3201 -112 1759 227 39 73 chr1 174524676 174525209 -68139144 + MLT2B1 LTR ERVL 2 516 -4 296 240 26 115 chr1 174525209 174525293 -68139060 + L2 LINE L2 3201 3291 -22 294 95 0 0 chr1 174525302 174525344 -68139009 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 33 25 0 0 chr1 174525350 174525390 -68138963 + AT_rich Low_complexity Low_complexity 1 40 0 416 295 52 42 chr1 174525436 174525629 -68138724 - MIR SINE MIR -22 240 46 42 65 0 0 chr1 174526736 174526813 -68137540 + AT_rich Low_complexity Low_complexity 1 77 0 298 235 181 60 chr1 174526965 174527114 -68137239 + MIR3 SINE MIR 16 182 -26 292 232 145 29 chr1 174527207 174527345 -68137008 + L2 LINE L2 2981 3134 -179 799 123 12 35 chr1 174527345 174527516 -68136837 + (TTCC)n Simple_repeat Simple_repeat 1 167 0 1222 159 9 33 chr1 174527762 174527822 -68136531 - MER3 DNA MER1_type 0 209 149 2442 41 58 0 chr1 174527822 174528114 -68136239 + AluY SINE Alu 1 309 -2 1222 159 9 33 chr1 174528114 174528267 -68136086 - MER3 DNA MER1_type -60 149 1 196 206 163 76 chr1 174528289 174528381 -68135972 + L2 LINE L2 2584 2683 -631 353 311 25 0 chr1 174528397 174528516 -68135837 - L2 LINE L2 0 3272 3151 256 208 75 25 chr1 174528794 174528953 -68135400 + (GTGTG)n Simple_repeat Simple_repeat 5 171 0 385 191 65 12 chr1 174528985 174529153 -68135200 + (GTGTG)n Simple_repeat Simple_repeat 3 179 0 270 85 51 0 chr1 174529257 174529316 -68135037 + (TG)n Simple_repeat Simple_repeat 2 63 0 201 301 75 59 chr1 174529387 174529626 -68134727 + L2 LINE L2 2808 3050 -222 2433 90 3 0 chr1 174529992 174530303 -68134050 - AluSp SINE Alu -1 312 1 2450 83 0 10 chr1 174530774 174531087 -68133266 - AluSq SINE Alu -3 310 1 24 32 0 0 chr1 174531580 174531611 -68132742 + AT_rich Low_complexity Low_complexity 1 31 0 190 336 53 15 chr1 174531885 174532016 -68132337 + L3b LINE CR1 1207 1342 -241 296 368 48 16 chr1 174532113 174532238 -68132115 - L2 LINE L2 -19 3253 3125 5650 194 7 11 chr1 174532252 174533416 -68130937 - L1PA14 LINE L1 -2361 3785 2627 9220 171 12 9 chr1 174533418 174535805 -68128548 + L1PA14 LINE L1 3759 6156 -5 1536 166 36 20 chr1 174536042 174536343 -68128010 + L1MB3 LINE L1 5877 6182 -1 425 282 21 94 chr1 174536662 174536896 -68127457 + MLT1L LTR MaLR 217 433 -182 317 140 0 18 chr1 174536936 174536993 -68127360 + MLT1L LTR MaLR 547 602 -13 2208 126 0 0 chr1 174537602 174537904 -68126449 - AluSc SINE Alu -7 302 1 2061 130 0 3 chr1 174538773 174539073 -68125280 - AluSx SINE Alu -13 299 1 2066 136 128 33 chr1 174539218 174539609 -68124744 - MSTA LTR MaLR 0 428 1 237 327 129 0 chr1 174539617 174539718 -68124635 + MIR SINE MIR 5 118 -144 425 296 27 43 chr1 174540840 174541026 -68123327 + L2 LINE L2 3127 3309 -4 24 0 0 0 chr1 174541652 174541676 -68122677 + AT_rich Low_complexity Low_complexity 1 24 0 221 81 0 27 chr1 174541971 174542008 -68122345 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 387 338 45 25 chr1 174542190 174542388 -68121965 + L2 LINE L2 3071 3272 0 2380 94 71 37 chr1 174542983 174543335 -68121018 + THE1B LTR MaLR 1 364 0 1138 190 5 0 chr1 174544044 174544239 -68120114 - MLT1B LTR MaLR -4 386 191 455 82 14 0 chr1 174544247 174544320 -68120033 + (GA)n Simple_repeat Simple_repeat 1 74 0 605 207 71 59 chr1 174544339 174544508 -68119845 - MLT1B LTR MaLR -217 173 3 213 308 122 9 chr1 174544512 174544619 -68119734 - MIR SINE MIR -70 192 74 185 247 59 82 chr1 174544795 174544880 -68119473 - L2 LINE L2 -48 3224 3142 347 275 110 11 chr1 174545630 174545767 -68118586 + MIR SINE MIR 5 152 -58 597 274 66 18 chr1 174545877 174546103 -68118250 - MER46C DNA MER2_type -19 319 83 501 218 165 38 chr1 174546401 174546596 -68117757 - MIR SINE MIR -44 218 3 188 379 68 29 chr1 174547494 174547597 -68116756 + L2 LINE L2 3122 3228 -44 794 273 107 33 chr1 174548048 174548385 -68115968 - MLT1J2 LTR MaLR -14 436 75 23 54 0 0 chr1 174548516 174548553 -68115800 + AT_rich Low_complexity Low_complexity 1 37 0 188 67 33 0 chr1 174548572 174548602 -68115751 + (CTATA)n Simple_repeat Simple_repeat 5 35 0 353 267 12 5 chr1 174548620 174548727 -68115626 - MIR SINE MIR -84 124 19 1934 202 49 28 chr1 174549447 174549950 -68114403 - L1ME1 LINE L1 -5 6161 5650 550 289 148 10 chr1 174550712 174551003 -68113350 + MER102b DNA MER1_type 11 341 0 194 91 30 0 chr1 174551171 174551204 -68113149 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 365 153 0 0 chr1 174551289 174551348 -68113005 + AluSq/x SINE Alu 76 134 -168 191 111 0 28 chr1 174551436 174551472 -68112881 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 209 212 30 45 chr1 174552096 174552228 -68112125 + (CACAC)n Simple_repeat Simple_repeat 1 130 0 353 311 25 0 chr1 174552393 174552512 -68111841 + L2 LINE L2 3151 3272 0 196 206 163 76 chr1 174552528 174552620 -68111733 - L2 LINE L2 -631 2683 2584 1240 161 9 19 chr1 174552642 174552792 -68111561 + MER3 DNA MER1_type 1 150 -59 2437 44 58 0 chr1 174552792 174553086 -68111267 - AluY SINE Alu 0 311 1 1240 161 9 19 chr1 174553086 174553146 -68111207 + MER3 DNA MER1_type 150 209 0 748 123 12 37 chr1 174553392 174553555 -68110798 + (GGAA)n Simple_repeat Simple_repeat 1 159 0 292 232 145 29 chr1 174553555 174553693 -68110660 - L2 LINE L2 -179 3134 2981 298 235 181 60 chr1 174553786 174553935 -68110418 - MIR3 SINE MIR -26 182 16 42 65 0 0 chr1 174554087 174554164 -68110189 + AT_rich Low_complexity Low_complexity 1 77 0 416 295 52 42 chr1 174555271 174555464 -68108889 + MIR SINE MIR 46 240 -22 33 25 0 0 chr1 174555510 174555550 -68108803 + AT_rich Low_complexity Low_complexity 1 40 0 294 95 0 0 chr1 174555556 174555598 -68108755 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 296 240 26 115 chr1 174555607 174555691 -68108662 - L2 LINE L2 -22 3291 3232 1759 227 39 73 chr1 174555691 174556224 -68108129 - MLT2B1 LTR ERVL -4 516 2 296 240 26 115 chr1 174556224 174556331 -68108022 - L2 LINE L2 -81 3232 3117 2447 68 3 0 chr1 174556735 174557029 -68107324 - AluY SINE Alu -16 295 1 2222 102 3 0 chr1 174558667 174558952 -68105401 - AluSx SINE Alu -26 286 1 445 269 74 47 chr1 174559679 174559703 -68104650 - MER5A DNA MER1_type -2 187 165 940 121 15 0 chr1 174559703 174559835 -68104518 + L1PA16 LINE L1 6024 6157 -9 445 269 74 47 chr1 174559835 174559959 -68104394 - MER5A DNA MER1_type -24 165 35 427 254 48 8 chr1 174560052 174560178 -68104175 - MIR SINE MIR -10 252 122 219 354 47 42 chr1 174560923 174561135 -68103218 + L2 LINE L2 2268 2480 -834 579 210 43 1 chr1 174561499 174561724 -68102629 - ORSL DNA AcHobo 0 275 13 482 293 139 28 chr1 174561895 174562219 -68102134 - L2 LINE L2 0 3313 2954 370 346 55 69 chr1 174562305 174562684 -68101669 + L2 LINE L2 2898 3271 -1 378 42 0 0 chr1 174562977 174563025 -68101328 + (TG)n Simple_repeat Simple_repeat 1 48 0 1488 161 3 62 chr1 174563394 174563686 -68100667 + AluJo SINE Alu 1 275 -37 2509 81 0 0 chr1 174563690 174563999 -68100354 - AluY SINE Alu -2 309 1 4218 168 19 31 chr1 174564000 174564498 -68099855 + L1MB8 LINE L1 5306 5793 -385 2424 60 0 0 chr1 174564498 174564800 -68099553 - AluY SINE Alu 0 302 1 4218 168 19 31 chr1 174564800 174565128 -68099225 + L1MB8 LINE L1 5793 6123 -55 582 294 7 7 chr1 174565163 174565306 -68099047 + MIR SINE MIR 12 154 -108 336 261 109 0 chr1 174566357 174566495 -68097858 - MIR SINE MIR 0 262 110 841 160 0 0 chr1 174566660 174566785 -68097568 - FLAM_C SINE Alu -16 127 3 2396 42 56 0 chr1 174566813 174567097 -68097256 + AluY SINE Alu 1 300 -11 219 241 69 69 chr1 174567140 174567227 -68097126 + L2 LINE L2 1884 1970 -1344 276 126 9 216 chr1 174567239 174567350 -68097003 - L1PA16 LINE L1 0 6166 6079 1010 182 10 21 chr1 174567350 174567542 -68096811 - MLT1A1 LTR MaLR -175 190 1 1366 279 95 50 chr1 174567542 174567657 -68096696 + L2 LINE L2 2316 2424 -889 2507 77 0 0 chr1 174567657 174567957 -68096396 - AluSx SINE Alu -12 300 1 1366 279 95 50 chr1 174567957 174568768 -68095585 + L2 LINE L2 2424 3274 -39 21 0 0 0 chr1 174568842 174568863 -68095490 + AT_rich Low_complexity Low_complexity 1 21 0 2197 136 17 45 chr1 174569507 174569706 -68094647 - MER2 DNA MER2_type 0 344 158 1770 188 0 0 chr1 174569706 174569998 -68094355 + AluJo SINE Alu 1 292 -20 2197 136 17 45 chr1 174569998 174570152 -68094201 - MER2 DNA MER2_type -186 158 1 929 291 30 50 chr1 174570388 174570787 -68093566 + LTR16C LTR ERVL 98 488 -3 4193 165 27 10 chr1 174571150 174571931 -68092422 + L1MB7 LINE L1 5391 6184 0 1549 244 74 16 chr1 174571928 174572415 -68091938 + L1ME2 LINE L1 2272 2786 -3360 * 437 297 29 0 chr1 174572408 174572583 -68091770 + L1ME2 LINE L1 3169 3348 -2798 * 2495 186 76 32 chr1 174572567 174572955 -68091398 + L1ME2 LINE L1 5016 5386 -778 2162 110 3 0 chr1 174572955 174573257 -68091096 + AluSx SINE Alu 1 303 0 2495 186 76 32 chr1 174573257 174573735 -68090618 + L1ME2 LINE L1 5386 5922 -242 1293 212 105 126 chr1 174573757 174574040 -68090313 - L1MC5 LINE L1 -540 7421 7134 3273 43 0 3 chr1 174574040 174574416 -68089937 - L1PA5 LINE L1 0 6154 5780 1293 212 105 126 chr1 174574416 174574523 -68089830 - L1MC5 LINE L1 -827 7134 7026 189 0 0 0 chr1 174574523 174574544 -68089809 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1293 212 105 126 chr1 174574544 174574566 -68089787 - L1MC5 LINE L1 -935 7026 7005 1453 179 4 29 chr1 174574566 174574840 -68089513 - AluJo SINE Alu -45 267 1 1293 212 105 126 chr1 174574840 174574965 -68089388 - L1MC5 LINE L1 -956 7005 6879 180 111 0 0 chr1 174574965 174574992 -68089361 + (AGTAG)n Simple_repeat Simple_repeat 5 31 0 261 83 0 0 chr1 174574999 174575035 -68089318 + (CAGAA)n Simple_repeat Simple_repeat 3 38 0 1293 212 105 126 chr1 174575035 174575227 -68089126 - L1MC5 LINE L1 -1088 6873 6696 250 155 134 41 chr1 174575250 174575347 -68089006 + L1M4 LINE L1 5243 5348 -798 304 285 146 7 chr1 174575893 174576037 -68088316 - L1M4 LINE L1 -1224 4922 4759 1295 274 90 22 chr1 174576059 174576650 -68087703 + L1MEd LINE L1 581 1211 -4908 1276 139 5 0 chr1 174576669 174576852 -68087501 + MER75 DNA T2_type 2 185 -329 2662 178 44 97 chr1 174576852 174577603 -68086750 + MER50 LTR ERV1 1 711 -23 2409 86 0 51 chr1 174577603 174577954 -68086399 + MER75 DNA T2_type 181 513 -1 423 276 60 34 chr1 174578011 174578276 -68086077 + L1MEd LINE L1 1331 1602 -4708 354 80 0 0 chr1 174578632 174578682 -68085671 + (CA)n Simple_repeat Simple_repeat 2 51 0 244 214 14 57 chr1 174578749 174578819 -68085534 + MER103 DNA DNA 91 157 -9 2160 120 7 3 chr1 174579325 174579634 -68084719 + AluSx SINE Alu 1 310 -2 276 149 0 0 chr1 174579634 174579681 -68084672 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 2682 128 45 87 chr1 174579727 174580288 -68084065 + MER21A LTR ERV1 386 922 -9 2231 95 3 0 chr1 174580696 174580980 -68083373 - AluSp SINE Alu -28 285 1 1583 168 51 7 chr1 174580994 174581268 -68083085 - AluJo SINE Alu -26 286 1 225 333 43 0 chr1 174581440 174581533 -68082820 + MIR SINE MIR 166 262 0 609 275 11 22 chr1 174581554 174581732 -68082621 - MIR SINE MIR -5 257 82 2316 97 3 0 chr1 174581733 174582031 -68082322 + AluSg SINE Alu 1 299 -11 2551 61 0 3 chr1 174582042 174582352 -68082001 + AluY SINE Alu 1 309 -2 365 339 68 56 chr1 174582752 174583074 -68081279 + L2 LINE L2 2425 2750 -564 1362 165 36 14 chr1 174583153 174583432 -68080921 + MER33 DNA MER1_type 23 307 -17 2361 181 107 83 chr1 174583595 174584149 -68080204 + MLT1F1 LTR MaLR 1 567 0 23 33 0 0 chr1 174584328 174584358 -68079995 + AT_rich Low_complexity Low_complexity 1 30 0 312 292 79 6 chr1 174584418 174584596 -68079757 - L1ME4a LINE L1 -1 6120 5930 415 189 0 9 chr1 174584774 174584857 -68079496 + MER5A DNA MER1_type 4 86 -103 941 228 68 8 chr1 174584867 174585117 -68079236 + L2 LINE L2 2927 3191 -122 401 250 40 30 chr1 174585107 174585207 -68079146 - L2 LINE L2 -5 3308 3208 * 1046 236 106 29 chr1 174585677 174586011 -68078342 + MLT1A1 LTR MaLR 1 463 -4 300 212 82 12 chr1 174586421 174586506 -68077847 - MIR SINE MIR -87 175 85 260 293 9 38 chr1 174586703 174586809 -68077544 - MIR3 SINE MIR -1 207 105 182 264 92 61 chr1 174588492 174588655 -68075698 - L3b LINE CR1 -148 1435 1268 663 332 111 19 chr1 174588985 174589346 -68075007 + MLT1I LTR MaLR 14 407 -2 581 264 40 0 chr1 174589402 174589550 -68074803 + MER5C DNA MER1_type 4 157 -167 200 270 16 16 chr1 174589568 174589631 -68074722 + L2 LINE L2 3205 3267 -5 256 239 101 72 chr1 174590153 174590341 -68074012 + MIR SINE MIR 33 221 -41 289 239 102 57 chr1 174590682 174590770 -68073583 + L2 LINE L2 3158 3249 -23 1327 170 47 151 chr1 174590773 174591196 -68073157 + MLT1B LTR MaLR 4 382 -8 27 0 0 0 chr1 174591764 174591791 -68072562 + AT_rich Low_complexity Low_complexity 1 27 0 14931 127 30 3 chr1 174592122 174594473 -68069880 - Tigger1 DNA MER2_type -2 2416 1 32 0 0 0 chr1 174594640 174594672 -68069681 + AT_rich Low_complexity Low_complexity 1 32 0 363 324 36 36 chr1 174595002 174595141 -68069212 - L2 LINE L2 0 3272 3134 1911 212 157 9 chr1 174595859 174596312 -68068041 + MLT1E LTR MaLR 74 593 0 28 48 0 0 chr1 174596326 174596368 -68067985 + AT_rich Low_complexity Low_complexity 1 42 0 967 154 12 12 chr1 174596654 174596823 -68067530 + MER58B DNA MER1_type 169 337 -4 338 245 116 23 chr1 174598421 174598637 -68065716 + L1MDa LINE L1 1366 1601 -4939 1056 282 84 24 chr1 174598638 174599233 -68065120 - L1MEc LINE L1 -4027 2369 1739 370 103 86 0 chr1 174599317 174599375 -68064978 + L1M4 LINE L1 4845 4907 -1239 330 87 0 0 chr1 174602553 174602599 -68061754 + (TA)n Simple_repeat Simple_repeat 2 47 0 2231 108 0 16 chr1 174602599 174602904 -68061449 - AluSx SINE Alu -11 301 2 543 249 46 76 chr1 174603031 174603228 -68061125 - L2 LINE L2 -3 3310 3120 472 265 90 42 chr1 174603224 174603390 -68060963 - L2 LINE L2 -672 2642 2469 * 4210 194 66 13 chr1 174603392 174603835 -68060518 + L1MC/D LINE L1 4266 4684 -1568 2202 128 0 10 chr1 174603835 174604147 -68060206 + AluSx SINE Alu 1 309 -3 4210 194 66 13 chr1 174604147 174604884 -68059469 + L1MC/D LINE L1 4684 5509 -743 2232 148 51 29 chr1 174604882 174605335 -68059018 + L1MC2 LINE L1 5862 6324 -20 * 198 0 0 0 chr1 174605335 174605357 -68058996 + (TG)n Simple_repeat Simple_repeat 2 23 0 1419 239 28 0 chr1 174605366 174605693 -68058660 - L2 LINE L2 -850 2464 2129 189 0 0 0 chr1 174605973 174605994 -68058359 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 27 87 0 0 chr1 174606587 174606656 -68057697 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr1 174606671 174606692 -68057661 + AT_rich Low_complexity Low_complexity 1 21 0 277 283 49 73 chr1 174609501 174609706 -68054647 + L1ME3A LINE L1 5962 6161 -9 458 289 63 32 chr1 174610114 174610304 -68054049 + MER91A DNA MER1_type 1 196 0 257 291 128 74 chr1 174610587 174610670 -68053683 + L1MC/D LINE L1 5524 5601 -2207 1924 150 3 3 chr1 174610670 174610964 -68053389 + AluSx SINE Alu 1 294 -18 257 291 128 74 chr1 174610964 174611083 -68053270 + L1MC/D LINE L1 5601 5737 -2071 213 39 0 0 chr1 174611152 174611178 -68053175 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 371 239 73 37 chr1 174611533 174611642 -68052711 + L2 LINE L2 3191 3303 -10 456 286 22 70 chr1 174612897 174613082 -68051271 - MIR3 SINE MIR -28 180 5 804 209 77 19 chr1 174613367 174613597 -68050756 - MLT1F1 LTR MaLR -328 239 1 778 254 153 21 chr1 174613603 174614405 -68049948 + L1ME3 LINE L1 4695 5606 -556 269 268 174 6 chr1 174614414 174614587 -68049766 + L1ME3 LINE L1 5748 5949 -221 208 294 0 0 chr1 174615058 174615109 -68049244 + L2 LINE L2 3256 3306 -7 2308 153 53 26 chr1 174615111 174615528 -68048825 + MSTA LTR MaLR 1 428 0 863 259 42 25 chr1 174617486 174617722 -68046631 - MIR SINE MIR -15 247 8 201 213 88 62 chr1 174619260 174619340 -68045013 - L2 LINE L2 -1242 2072 1991 539 225 179 6 chr1 174619344 174619517 -68044836 - L2 LINE L2 -516 2798 2596 1214 238 70 42 chr1 174619704 174620338 -68044015 + L1ME LINE L1 1125 1772 -4833 488 253 47 0 chr1 174621582 174621732 -68042621 + L1MB8 LINE L1 4535 4691 -1455 269 237 161 46 chr1 174621965 174622072 -68042281 + L1P4 LINE L1 5014 5107 -1049 2469 88 125 27 chr1 174622072 174622480 -68041873 - LTR7 LTR ERV1 -2 448 1 269 237 161 46 chr1 174622480 174622822 -68041531 + L1P4 LINE L1 5107 5524 -632 * 278 250 15 0 chr1 174622811 174622879 -68041474 + L1MB8 LINE L1 5592 5660 -510 2187 155 58 14 chr1 174623112 174623544 -68040809 + L1MB8 LINE L1 5701 6151 -27 2128 159 54 13 chr1 174623591 174623980 -68040373 - MLT2D LTR ERVL -9 405 1 286 244 49 73 chr1 174624021 174624144 -68040209 + L1ME3A LINE L1 5963 6082 -88 28 0 0 0 chr1 174624213 174624241 -68040112 + AT_rich Low_complexity Low_complexity 1 28 0 274 253 81 0 chr1 174624500 174624599 -68039754 + L1ME4a LINE L1 5985 6091 -30 1218 199 68 18 chr1 174624740 174625077 -68039276 - L1M4 LINE L1 -1954 4192 3839 4669 140 52 2 chr1 174625082 174625905 -68038448 - L1MB3 LINE L1 -1 6182 5319 5048 80 28 3 chr1 174626148 174626861 -68037492 - L1PA13 LINE L1 -3 6160 5430 4700 160 9 7 chr1 174626919 174627837 -68036516 - L1PA13 LINE L1 -728 5440 4517 238 299 104 0 chr1 174627984 174628061 -68036292 + L2 LINE L2 3188 3272 0 301 297 99 0 chr1 174628799 174628910 -68035443 - MIR SINE MIR -67 141 20 24 35 0 53 chr1 174629256 174629313 -68035040 + AT_rich Low_complexity Low_complexity 1 54 0 2480 100 40 3 chr1 174629729 174630080 -68034273 - THE1B LTR MaLR 0 364 1 197 333 0 0 chr1 174630383 174630434 -68033919 + L2 LINE L2 3137 3187 -85 212 348 11 0 chr1 174630452 174630541 -68033812 - L2 LINE L2 -1005 2309 2220 216 306 159 56 chr1 174630655 174631014 -68033339 - L2 LINE L2 -1357 1957 1562 2054 125 0 29 chr1 174631324 174631636 -68032717 + AluJb SINE Alu 1 303 -9 354 23 0 0 chr1 174632205 174632248 -68032105 + (CA)n Simple_repeat Simple_repeat 2 44 0 319 299 97 67 chr1 174632894 174633162 -68031191 - L1M2 LINE L1 -5579 1270 995 372 350 39 22 chr1 174634381 174634561 -68029792 - MIR SINE MIR -33 229 47 483 339 61 6 chr1 174634617 174634782 -68029571 + MIR3 SINE MIR 33 206 -2 245 324 95 0 chr1 174635116 174635221 -68029132 - MIR SINE MIR -64 198 84 502 236 9 0 chr1 174635264 174635374 -68028979 - MIR SINE MIR -46 216 106 198 349 53 38 chr1 174635580 174635712 -68028641 - L2 LINE L2 -223 3049 2916 331 301 129 12 chr1 174637498 174637661 -68026692 + MIR SINE MIR 81 262 0 1764 188 10 0 chr1 174637806 174638104 -68026249 + AluJb SINE Alu 3 303 -9 441 0 0 0 chr1 174638131 174638180 -68026173 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 693 216 22 43 chr1 174638191 174638376 -68025977 - MIR SINE MIR -38 224 44 404 250 30 0 chr1 174640289 174640389 -68023964 - L1ME3A LINE L1 -5 6165 6063 297 210 121 65 chr1 174640400 174640524 -68023829 + Charlie8 DNA MER1_type 169 284 -2133 349 325 27 37 chr1 174642481 174642669 -68021684 + MER5A DNA MER1_type 2 187 -2 2208 117 13 0 chr1 174645346 174645654 -68018699 + AluSx SINE Alu 1 312 0 185 329 40 0 chr1 174645786 174645862 -68018491 + MIR3 SINE MIR 118 196 -12 409 73 0 0 chr1 174647623 174647678 -68016675 - MSTD LTR MaLR -339 57 3 2004 160 47 18 chr1 174648310 174648692 -68015661 - MSTD LTR MaLR 0 396 4 829 257 91 4 chr1 174648854 174649119 -68015234 + MLT1F LTR MaLR 9 296 -246 461 326 112 23 chr1 174649205 174649509 -68014844 - L2 LINE L2 -48 3265 2935 594 161 0 0 chr1 174651710 174651803 -68012550 - FRAM SINE Alu -14 162 70 528 330 53 14 chr1 174652003 174652212 -68012141 - MIR SINE MIR 0 262 46 886 227 187 3 chr1 174652213 174652512 -68011841 + MER69 DNA AcHobo 1 354 -872 1234 233 93 50 chr1 174652562 174653004 -68011349 + MER69 DNA AcHobo 482 942 -1584 1119 192 83 79 chr1 174653001 174653408 -68010945 + MER69 DNA AcHobo 2118 2526 0 * 225 307 241 6 chr1 174655013 174655179 -68009174 + L2 LINE L2 1228 1432 -1882 224 268 196 0 chr1 174655331 174655428 -68008925 - L2 LINE L2 -4 3309 3194 * 764 331 124 50 chr1 174655420 174656660 -68007693 + L2 LINE L2 1765 3119 -153 2205 129 0 0 chr1 174656660 174656963 -68007390 - AluSx SINE Alu -9 303 1 764 331 124 50 chr1 174656963 174657114 -68007239 + L2 LINE L2 3119 3258 -14 424 206 112 0 chr1 174659684 174659791 -68004562 + Charlie8 DNA MER1_type 71 189 -2228 21 36 0 0 chr1 174660218 174660246 -68004107 + AT_rich Low_complexity Low_complexity 1 28 0 1524 209 117 54 chr1 174660987 174661259 -68003094 - L1MC4 LINE L1 0 8042 7789 1678 192 3 3 chr1 174661259 174661546 -68002807 - AluJo SINE Alu -23 289 3 1524 209 117 54 chr1 174661546 174661980 -68002373 - L1MC4 LINE L1 -253 7789 7291 197 339 85 8 chr1 174661982 174662100 -68002253 + L2 LINE L2 3146 3272 0 1668 250 88 24 chr1 174662519 174663182 -68001171 - HsTC2a DNA Tc2 -37 707 3 504 267 67 50 chr1 174663208 174663367 -68000986 + L1ME LINE L1 5462 5631 -490 2271 84 3 0 chr1 174663367 174663690 -68000663 - AluSp SINE Alu 0 324 1 504 267 67 50 chr1 174663690 174663829 -68000524 + L1ME LINE L1 5631 5766 -355 1099 237 135 99 chr1 174666301 174666858 -67997495 - MLT1G LTR MaLR -18 572 9 282 213 205 0 chr1 174666881 174667003 -67997350 - L1MC/D LINE L1 -1949 5859 5713 255 262 94 0 chr1 174667030 174667179 -67997174 - L1MC/D LINE L1 -2064 5744 5582 231 186 68 0 chr1 174667198 174667257 -67997096 - MLT1J LTR MaLR -10 501 439 590 255 52 58 chr1 174668383 174668860 -67995493 + L1ME3A LINE L1 977 1487 -4823 2534 42 0 13 chr1 174668860 174669167 -67995186 + AluY SINE Alu 1 303 -8 590 255 52 58 chr1 174669167 174669286 -67995067 + L1ME3A LINE L1 1487 1605 -4705 241 300 64 16 chr1 174669703 174669953 -67994400 + L1ME3A LINE L1 2645 2906 -3223 1322 289 89 11 chr1 174670011 174670872 -67993481 + L1ME3A LINE L1 3070 3998 -2131 565 290 81 26 chr1 174670947 174671481 -67992872 + L1ME3A LINE L1 4139 4701 -1428 1189 280 61 23 chr1 174671591 174672259 -67992094 + L1ME3A LINE L1 5238 5933 -220 1710 76 31 5 chr1 174672302 174672526 -67991827 - MER30 DNA MER1_type 0 230 1 192 395 35 12 chr1 174672837 174672923 -67991430 - MIR SINE MIR -80 128 41 201 195 0 0 chr1 174672968 174673009 -67991344 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 261 229 0 33 chr1 174674946 174675007 -67989346 - MIR SINE MIR -125 137 79 2288 78 3 0 chr1 174675239 174675523 -67988830 + AluSx SINE Alu 1 285 -27 293 250 107 0 chr1 174675570 174675654 -67988699 + MIR SINE MIR 100 192 -70 2564 80 0 0 chr1 174675655 174675966 -67988387 + AluY SINE Alu 1 311 0 601 214 53 8 chr1 174676948 174677079 -67987274 - L2 LINE L2 -2 3270 3134 710 251 57 13 chr1 174677697 174677924 -67986429 + MIR SINE MIR 7 243 -19 414 370 42 69 chr1 174679186 174679635 -67984718 + L2 LINE L2 2835 3271 -1 607 193 0 9 chr1 174679690 174679799 -67984554 - L2 LINE L2 -7 3306 3199 358 257 89 0 chr1 174679799 174679900 -67984453 - MLT1J LTR MaLR -399 112 3 452 212 69 85 chr1 174680089 174680265 -67984088 - MIR SINE MIR -44 218 36 403 246 92 23 chr1 174680951 174681081 -67983272 + MIR SINE MIR 110 248 -14 23 0 0 0 chr1 174681089 174681112 -67983241 + AT_rich Low_complexity Low_complexity 1 23 0 2906 143 48 0 chr1 174681145 174681650 -67982703 + L1MB7 LINE L1 5647 6175 -9 287 303 87 36 chr1 174682102 174682297 -67982056 + MER102b DNA MER1_type 126 330 -11 227 304 230 15 chr1 174682326 174682461 -67981892 - L2 LINE L2 0 3272 3109 309 323 66 24 chr1 174683136 174683303 -67981050 + MIR SINE MIR 60 233 -29 23 54 0 0 chr1 174683347 174683384 -67980969 + AT_rich Low_complexity Low_complexity 1 37 0 2297 103 3 3 chr1 174684420 174684722 -67979631 + AluSq SINE Alu 1 302 -11 2193 119 13 0 chr1 174685563 174685866 -67978487 - AluSx SINE Alu -5 307 1 995 187 6 0 chr1 174687181 174687347 -67977006 - FAM SINE Alu -8 167 1 1861 148 6 25 chr1 174688303 174688621 -67975732 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 174688736 174688757 -67975596 + AT_rich Low_complexity Low_complexity 1 21 0 396 108 0 40 chr1 174688769 174688843 -67975510 - L1PA16 LINE L1 0 6166 6096 386 263 153 10 chr1 174689008 174689217 -67975136 - L1P LINE L1 -2208 3938 3700 204 40 0 0 chr1 174689222 174689247 -67975106 + (TG)n Simple_repeat Simple_repeat 2 26 0 342 368 79 9 chr1 174689250 174689579 -67974774 - L1M4 LINE L1 -2469 3677 3326 29 70 0 0 chr1 174690704 174690761 -67973592 + AT_rich Low_complexity Low_complexity 1 57 0 275 257 69 46 chr1 174690783 174690958 -67973395 - L1MC4a LINE L1 -1906 5902 5724 1802 177 0 13 chr1 174690969 174691358 -67972995 - AluJo SINE Alu 0 387 3 2300 112 0 0 chr1 174691370 174691675 -67972678 - AluY SINE Alu -6 305 1 238 138 46 15 chr1 174692468 174692533 -67971820 + (TA)n Simple_repeat Simple_repeat 2 68 0 531 323 97 0 chr1 174693266 174693452 -67970901 + MIR SINE MIR 4 207 -55 686 156 45 89 chr1 174693466 174693645 -67970708 + MIR SINE MIR 92 262 0 324 231 0 0 chr1 174694460 174694538 -67969815 - L1MB4 LINE L1 0 6180 6103 434 263 91 66 chr1 174695674 174695872 -67968481 - L1ME LINE L1 -302 5819 5611 2503 76 0 0 chr1 174695872 174696174 -67968179 + AluY SINE Alu 2 303 -8 434 263 91 66 chr1 174696174 174696249 -67968104 - L1ME LINE L1 -510 5611 5539 1653 192 14 7 chr1 174696462 174696749 -67967604 + AluJb SINE Alu 1 289 -23 620 133 71 0 chr1 174696841 174696939 -67967414 + MER63 DNA MER1_type 1 731 -105 237 143 0 0 chr1 174697106 174697141 -67967212 + MER63 DNA MER1_type 985 1019 -43 294 317 24 19 chr1 174698130 174698287 -67966066 - MIR SINE MIR -63 145 19 381 316 96 0 chr1 174698405 174698541 -67965812 - MARNA DNA Mariner -9 577 429 777 332 16 4 chr1 174698827 174699080 -67965273 - MIR SINE MIR 0 262 7 717 258 132 54 chr1 174699937 174700383 -67963970 - MLT1J LTR MaLR -30 481 1 202 188 108 36 chr1 174702149 174702233 -67962120 + MIR SINE MIR 64 150 -112 1455 257 116 54 chr1 174702440 174703296 -67961057 - HAL1 LINE L1 -8 2499 1591 275 329 221 0 chr1 174705020 174705160 -67959193 + MIR SINE MIR 49 219 -43 560 250 51 17 chr1 174705283 174705459 -67958894 - MIR SINE MIR -75 187 6 2353 106 3 0 chr1 174706183 174706486 -67957867 + AluSx SINE Alu 6 309 -3 382 274 0 0 chr1 174706593 174706677 -67957676 + L2 LINE L2 3189 3272 0 332 228 13 25 chr1 174706829 174706908 -67957445 + L2 LINE L2 3235 3312 -1 183 235 0 0 chr1 174707016 174707050 -67957303 + MIR SINE MIR 111 144 -64 1597 109 36 5 chr1 174707760 174707981 -67956372 + MER30 DNA MER1_type 3 230 0 459 222 16 48 chr1 174708518 174708644 -67955709 - L2 LINE L2 -19 3294 3173 1378 293 121 14 chr1 174708651 174709305 -67955048 - L2 LINE L2 -314 2999 2277 416 268 137 27 chr1 174709819 174710002 -67954351 + MIR SINE MIR 5 207 -55 331 219 117 13 chr1 174710999 174711152 -67953201 - MLT1I LTR MaLR -1 408 284 234 271 57 0 chr1 174711270 174711340 -67953013 - MLT1I LTR MaLR -295 114 41 462 300 150 0 chr1 174711855 174712082 -67952271 - MIR SINE MIR 0 262 2 234 333 11 11 chr1 174712520 174712607 -67951746 + MIR SINE MIR 62 148 -60 184 315 22 22 chr1 174713422 174713511 -67950842 + L3b LINE CR1 1268 1356 -227 3699 145 16 13 chr1 174715082 174715758 -67948595 - L1 LINE L1 -1256 4890 4213 435 276 59 0 chr1 174716897 174717049 -67947304 + MER5A DNA MER1_type 1 161 -28 534 229 0 8 chr1 174717086 174717204 -67947149 - MER53 DNA DNA -72 117 1 12015 221 31 22 chr1 174717298 174720140 -67944213 - L1M4 LINE L1 -855 5789 2914 2269 96 0 0 chr1 174720140 174720431 -67943922 - AluY SINE Alu -20 291 1 12015 221 31 22 chr1 174720431 174720704 -67943649 - L1M4 LINE L1 -3730 2914 2645 2240 264 12 33 chr1 174720694 174721337 -67943016 - L1M4 LINE L1 -5808 734 105 * 1233 235 111 39 chr1 174722339 174722752 -67941601 - L1ME3A LINE L1 0 6170 5728 190 262 24 0 chr1 174723658 174723742 -67940611 + CT-rich Low_complexity Low_complexity 3 88 0 1261 164 18 29 chr1 174724641 174724916 -67939437 - Charlie5 DNA MER1_type 0 2623 2352 2388 65 10 0 chr1 174724933 174725225 -67939128 + AluY SINE Alu 1 295 -16 473 180 60 60 chr1 174725225 174725375 -67938978 - Charlie5 DNA MER1_type -2423 189 40 199 287 78 54 chr1 174726758 174726887 -67937466 - MIR SINE MIR -61 147 16 180 366 61 23 chr1 174726922 174727053 -67937300 - L2 LINE L2 -21 3251 3116 263 294 109 8 chr1 174727227 174727346 -67937007 + L2 LINE L2 3136 3266 -6 290 330 136 39 chr1 174731949 174732207 -67932146 - L2 LINE L2 -25 3247 2965 292 250 57 0 chr1 174733115 174733203 -67931150 + L3b LINE CR1 1345 1437 -146 367 205 172 25 chr1 174734986 174735108 -67929245 - MIR SINE MIR -89 173 34 21 0 0 0 chr1 174735445 174735466 -67928887 + AT_rich Low_complexity Low_complexity 1 21 0 314 211 196 23 chr1 174736153 174736281 -67928072 + MIR3 SINE MIR 40 185 -23 24 24 0 24 chr1 174736580 174736605 -67927748 + AT_rich Low_complexity Low_complexity 1 26 -15 1574 125 19 100 chr1 174736605 174736924 -67927429 + AluJo SINE Alu 1 293 -19 24 24 0 24 chr1 174736924 174736940 -67927413 + AT_rich Low_complexity Low_complexity 26 41 0 293 295 86 89 chr1 174737178 174737514 -67926839 + MLT1J2 LTR MaLR 68 422 -7 1986 134 11 0 chr1 174738298 174738582 -67925771 + AluSx SINE Alu 2 288 -24 1602 208 13 40 chr1 174788978 174789288 -67875065 + MLT1A1 LTR MaLR 1 301 -64 2448 70 0 3 chr1 174789288 174789586 -67874767 + AluY SINE Alu 1 297 -14 1602 208 13 40 chr1 174789586 174789650 -67874703 + MLT1A1 LTR MaLR 301 365 0 428 295 126 8 chr1 174789919 174790123 -67874230 + MIR SINE MIR 23 250 -12 277 342 75 16 chr1 174791200 174791387 -67872966 + L2 LINE L2 2668 2865 -449 377 73 0 0 chr1 174791537 174791592 -67872761 + Alu SINE Alu 244 298 -3 2382 86 0 3 chr1 174791600 174791904 -67872449 + AluSq SINE Alu 1 303 -10 504 177 80 11 chr1 174792086 174792232 -67872121 - L1ME1 LINE L1 -1 6333 6029 26 50 0 0 chr1 174792347 174792387 -67871966 + AT_rich Low_complexity Low_complexity 1 40 0 323 241 69 21 chr1 174792704 174792768 -67871585 + L1ME3A LINE L1 2 61 -6058 207 0 0 0 chr1 174792768 174792791 -67871562 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 323 241 69 21 chr1 174792791 174792871 -67871482 + L1ME3A LINE L1 61 153 -5966 727 270 68 25 chr1 174793183 174793420 -67870933 + MLT1J2 LTR MaLR 204 450 0 584 303 106 21 chr1 174793494 174793972 -67870381 + L1ME3A LINE L1 318 647 -4964 1360 234 126 11 chr1 174793972 174794397 -67869956 + LTR40c LTR ERVL 1 462 0 476 285 96 34 chr1 174794406 174795063 -67869290 + L1ME3A LINE L1 843 1576 -4734 381 131 0 0 chr1 174795063 174795124 -67869229 + (GA)n Simple_repeat Simple_repeat 2 62 0 525 281 30 57 chr1 174795211 174795260 -67869093 + L1ME3A LINE L1 5419 5468 -685 2427 76 0 0 chr1 174795260 174795551 -67868802 + AluSc SINE Alu 1 291 -18 525 281 30 57 chr1 174795551 174795764 -67868589 + L1ME3A LINE L1 5468 5674 -479 19667 136 32 87 chr1 174795780 174799089 -67865264 + L1P LINE L1 12 3500 -2646 2456 66 0 3 chr1 174799089 174799390 -67864963 + AluY SINE Alu 11 310 -1 19667 136 32 87 chr1 174799390 174800153 -67864200 + L1P LINE L1 3500 3862 -2284 7077 60 23 10 chr1 174800153 174801132 -67863221 + L1PA7 LINE L1 5159 6148 -6 19667 136 32 87 chr1 174801132 174801157 -67863196 + L1P LINE L1 3862 3887 -2259 607 275 18 63 chr1 174801158 174801449 -67862904 + L1ME3A LINE L1 5661 5942 -162 703 271 166 50 chr1 174801906 174803048 -67861305 + L1ME3 LINE L1 4549 5826 -336 869 219 67 0 chr1 174803240 174803404 -67860949 + MER96 DNA MER1_type 1 175 0 300 394 54 25 chr1 174803468 174803671 -67860682 - L1MEd LINE L1 -5468 651 443 1888 169 0 7 chr1 174804471 174804778 -67859575 + AluJo SINE Alu 1 305 -7 266 106 21 0 chr1 174805014 174805061 -67859292 + (TC)n Simple_repeat Simple_repeat 1 48 0 271 300 134 52 chr1 174806376 174806683 -67857670 + L2 LINE L2 2550 2881 -433 518 241 123 12 chr1 174808191 174808361 -67855992 - MIR SINE MIR -9 253 65 1165 183 17 0 chr1 174808633 174808808 -67855545 + MER45A DNA AcHobo 1 178 0 2135 144 0 0 chr1 174808860 174809166 -67855187 - AluSx SINE Alu -6 306 1 2377 97 0 3 chr1 174809337 174809647 -67854706 - AluSx SINE Alu -3 309 1 918 155 31 0 chr1 174810188 174810317 -67854036 - FLAM_C SINE Alu 0 133 1 489 335 28 11 chr1 174811262 174811438 -67852915 + MIR3 SINE MIR 5 183 -25 21 0 0 0 chr1 174813262 174813283 -67851070 + AT_rich Low_complexity Low_complexity 1 21 0 511 236 113 32 chr1 174815692 174815928 -67848425 - L1MC/D LINE L1 -392 5729 5540 29 47 0 0 chr1 174816489 174816532 -67847821 + AT_rich Low_complexity Low_complexity 1 43 0 2372 108 0 0 chr1 174816589 174816895 -67847458 - AluSx SINE Alu -6 306 1 1480 247 91 16 chr1 174816968 174817492 -67846861 + L2 LINE L2 2490 3049 -264 2281 196 25 2 chr1 174818024 174818473 -67845880 + L1MB4 LINE L1 5713 6171 -9 348 235 113 35 chr1 174818775 174818890 -67845463 - MIR SINE MIR -13 249 126 450 276 31 8 chr1 174818947 174819074 -67845279 - MIR SINE MIR -17 245 116 462 284 133 87 chr1 174819178 174819738 -67844615 + L2 LINE L2 2594 3271 -1 2803 29 0 0 chr1 174819990 174820301 -67844052 - AluY SINE Alu 0 311 1 597 181 16 31 chr1 174820363 174820490 -67843863 + L2 LINE L2 3189 3313 0 186 103 0 0 chr1 174820977 174821006 -67843347 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 192 77 0 0 chr1 174821926 174821952 -67842401 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 960 172 20 0 chr1 174822477 174822628 -67841725 - FAM SINE Alu -17 158 5 2426 32 0 14 chr1 174823638 174823961 -67840392 - AluY SINE Alu 0 319 1 2241 99 3 0 chr1 174824152 174824444 -67839909 - AluSx SINE Alu -19 293 1 1857 243 68 39 chr1 174826030 174826173 -67838180 - L1MC4a LINE L1 -1845 5963 5826 4415 80 11 11 chr1 174826173 174826725 -67837628 + MER41A LTR ERV1 3 554 0 1857 243 68 39 chr1 174826725 174827253 -67837100 - L1MC4a LINE L1 -1982 5826 5272 30 59 0 0 chr1 174827454 174827505 -67836848 + AT_rich Low_complexity Low_complexity 1 51 0 302 253 105 0 chr1 174828253 174828348 -67836005 + MER117 DNA MER1_type 44 148 -49 203 328 0 0 chr1 174828469 174828527 -67835826 + MER91C DNA MER1_type 33 90 -50 2841 91 63 21 chr1 174828818 174829247 -67835106 - LTR7 LTR ERV1 -2 448 2 2694 63 45 13 chr1 174829248 174829628 -67834725 - HERVH LTR ERV1 0 7713 7322 1434 125 19 0 chr1 174829626 174829842 -67834511 - HERVH LTR ERV1 -1894 5819 5600 * 4370 142 5 1 chr1 174829843 174830503 -67833850 - HERVH LTR ERV1 -2564 5149 4488 3412 112 6 2 chr1 174830505 174831005 -67833348 - HERVH LTR ERV1 -3720 3993 3492 879 124 28 0 chr1 174830997 174831142 -67833211 - HERVH LTR ERV1 -4425 3288 3140 * 17441 96 23 21 chr1 174831121 174834354 -67829999 - HERVH LTR ERV1 -4718 2995 1 2892 93 58 21 chr1 174834356 174834788 -67829565 - LTR7 LTR ERV1 -2 448 1 421 248 44 0 chr1 174835310 174835423 -67828930 + MIR SINE MIR 76 193 -69 21 36 0 0 chr1 174835579 174835607 -67828746 + AT_rich Low_complexity Low_complexity 1 28 0 542 294 142 28 chr1 174835731 174836148 -67828205 + L2 LINE L2 2611 3082 -190 1891 148 11 0 chr1 174836150 174836433 -67827920 + AluJo SINE Alu 3 288 -24 21 0 0 0 chr1 174836437 174836458 -67827895 + AT_rich Low_complexity Low_complexity 1 21 0 314 211 14 0 chr1 174836771 174836842 -67827511 - MLT1F1 LTR MaLR 0 567 496 776 211 16 41 chr1 174837067 174837261 -67827092 - MLT1E LTR MaLR -2 591 403 1191 186 8 65 chr1 174839319 174839566 -67824787 + Tigger7 DNA MER2_type 2 234 -2253 738 132 0 0 chr1 174839567 174839673 -67824680 + Tigger7 DNA MER2_type 2382 2487 0 2252 118 3 0 chr1 174839675 174839980 -67824373 - AluSx SINE Alu -6 306 1 22 0 0 0 chr1 174840262 174840284 -67824069 + AT_rich Low_complexity Low_complexity 1 22 0 1829 147 0 17 chr1 174840895 174841188 -67823165 - AluJb SINE Alu -2 310 23 1776 155 13 28 chr1 174841923 174842240 -67822113 - AluJb SINE Alu 0 312 1 272 254 206 63 chr1 174842391 174842580 -67821773 + MIR SINE MIR 21 236 -26 194 274 20 0 chr1 174843993 174844044 -67820309 + L2 LINE L2 2594 2645 -669 2243 88 7 14 chr1 174844185 174844480 -67819873 + AluSq SINE Alu 1 293 -20 22 0 0 0 chr1 174845757 174845779 -67818574 + AT_rich Low_complexity Low_complexity 1 22 0 411 205 179 8 chr1 174849070 174849187 -67815166 - MIR SINE MIR -89 173 37 3769 209 71 23 chr1 174850723 174851640 -67812713 - L1ME1 LINE L1 -4 6231 5192 207 0 0 0 chr1 174851640 174851663 -67812690 + (CA)n Simple_repeat Simple_repeat 2 24 0 3769 209 71 23 chr1 174851663 174852402 -67811951 - L1ME1 LINE L1 -1043 5192 4490 1939 263 16 46 chr1 174852414 174852980 -67811373 - MLT2B3 LTR ERVL -5 549 1 2433 229 78 36 chr1 174852985 174853357 -67810996 - L1ME1 LINE L1 -1733 4482 4127 472 155 78 0 chr1 174853357 174853460 -67810893 - L1MB7 LINE L1 0 6184 6074 2433 229 78 36 chr1 174853460 174853868 -67810485 - L1ME1 LINE L1 -2088 4127 3669 1275 167 47 0 chr1 174853891 174854106 -67810247 + MER46A DNA MER2_type 2 226 -10 3501 236 77 11 chr1 174854167 174855330 -67809023 - L1ME1 LINE L1 -2592 3623 2384 26 0 0 0 chr1 174855350 174855376 -67808977 + AT_rich Low_complexity Low_complexity 1 26 0 1131 137 81 0 chr1 174855391 174855588 -67808765 + THE1C LTR MaLR 163 375 0 13283 141 7 24 chr1 174855588 174857615 -67806738 - L1M1 LINE L1 -5561 2004 11 2305 265 70 24 chr1 174857613 174858613 -67805740 - L1ME1 LINE L1 -4248 2148 1103 * 299 315 55 34 chr1 174858640 174858878 -67805475 + L2 LINE L2 1985 2227 -1087 * 319 303 106 103 chr1 174858869 174859305 -67805048 - L2 LINE L2 -56 3257 2821 361 326 149 25 chr1 174859792 174860160 -67804193 + L2 LINE L2 2272 2685 -629 2268 106 3 3 chr1 174860923 174861224 -67803129 - AluSx SINE Alu -11 301 1 348 317 54 63 chr1 174861833 174861910 -67802443 - MIR SINE MIR -51 211 135 2078 96 11 4 chr1 174861910 174862191 -67802162 - AluSg SINE Alu -5 305 23 348 317 54 63 chr1 174862191 174862318 -67802035 - MIR SINE MIR -127 135 9 1131 186 22 26 chr1 174862318 174862587 -67801766 - Charlie2 DNA MER1_type 0 2862 2595 2035 116 42 0 chr1 174862598 174862883 -67801470 - AluY SINE Alu -14 297 1 297 243 318 23 chr1 174862980 174863153 -67801200 + L2 LINE L2 3004 3227 -86 629 219 184 24 chr1 174863183 174863471 -67800882 - Charlie2 DNA MER1_type -299 2563 2230 723 249 81 49 chr1 174863522 174863807 -67800546 - Charlie2 DNA MER1_type -2487 295 2 1106 217 107 43 chr1 174864186 174864559 -67799794 + MLT1J1 LTR MaLR 50 446 0 1834 172 155 83 chr1 174864671 174865063 -67799290 + MLT2B1 LTR ERVL 1 436 -84 189 0 0 0 chr1 174865063 174865084 -67799269 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 1834 172 155 83 chr1 174865084 174865174 -67799179 + MLT2B1 LTR ERVL 436 518 -2 211 234 208 0 chr1 174865602 174865679 -67798674 - MIR3 SINE MIR -14 194 102 550 267 24 36 chr1 174865708 174865873 -67798480 + MIR SINE MIR 46 208 -54 205 377 164 0 chr1 174866173 174866295 -67798058 + MIR3 SINE MIR 22 163 -45 444 223 9 36 chr1 174866915 174867027 -67797326 - L2 LINE L2 0 3313 3205 1892 206 44 0 chr1 174867027 174867367 -67796986 - MLT1A1 LTR MaLR 0 365 11 2097 116 24 0 chr1 174867529 174867822 -67796531 + AluSx SINE Alu 1 300 -12 186 71 0 0 chr1 174868350 174868378 -67795975 + (TC)n Simple_repeat Simple_repeat 2 29 0 254 277 152 27 chr1 174868815 174868927 -67795426 - MIR SINE MIR -57 205 80 1764 154 119 29 chr1 174869999 174870343 -67794010 + THE1C LTR MaLR 1 375 0 2463 129 32 47 chr1 174871537 174871941 -67792412 + MER48 LTR ERV1 1 398 0 1919 154 23 0 chr1 174871941 174872240 -67792113 + HERVH48 LTR ERV1 1 306 -6348 * 2028 49 8 23 chr1 174872238 174872504 -67791849 - HERVH48 LTR ERV1 -5070 1584 1323 32043 102 34 6 chr1 174872512 174877199 -67787154 + HERVH48 LTR ERV1 328 5144 -1510 3717 88 4 2 chr1 174877191 174877670 -67786683 + HERVH48 LTR ERV1 6175 6654 0 * 2401 150 30 37 chr1 174877670 174878071 -67786282 + MER48 LTR ERV1 1 398 0 24 0 0 29 chr1 174878877 174878889 -67785464 + AT_rich Low_complexity Low_complexity 1 12 -22 2179 124 0 0 chr1 174878889 174879187 -67785166 - AluSg SINE Alu -12 298 1 24 0 0 29 chr1 174879187 174879209 -67785144 + AT_rich Low_complexity Low_complexity 12 34 0 212 279 105 23 chr1 174879632 174879718 -67784635 + MIR SINE MIR 45 137 -71 2925 68 0 32 chr1 174879738 174880000 -67784353 + L1PA8 LINE L1 5805 6053 -119 2282 95 7 0 chr1 174880000 174880294 -67784059 + AluSg SINE Alu 1 296 -14 2925 68 0 32 chr1 174880294 174880411 -67783942 + L1PA8 LINE L1 6053 6172 0 572 278 68 0 chr1 174882411 174882616 -67781737 - LTR33A LTR ERVL -21 502 284 229 83 0 28 chr1 174882615 174882651 -67781702 + MER63 DNA MER1_type 5 39 -397 * 809 304 113 26 chr1 174883331 174883722 -67780631 - L2 LINE L2 -3 3310 2886 2192 248 181 14 chr1 174883755 174884331 -67780022 - L2 LINE L2 -516 2798 2319 1037 155 62 16 chr1 174884331 174884525 -67779828 + MER105 DNA DNA 1 203 -1 2192 248 181 14 chr1 174884525 174884795 -67779558 - L2 LINE L2 -995 2319 1811 209 328 0 0 chr1 174885353 174885417 -67778936 + MIR SINE MIR 91 154 -108 233 221 26 0 chr1 174887472 174887549 -67776804 + GA-rich Low_complexity Low_complexity 3 81 0 2297 101 0 0 chr1 174887756 174888052 -67776301 + AluY SINE Alu 1 296 -15 560 238 82 43 chr1 174888075 174888314 -67776039 - L1ME1 LINE L1 0 6166 5924 30 0 0 0 chr1 174888940 174888970 -67775383 + AT_rich Low_complexity Low_complexity 1 30 0 230 0 0 32 chr1 174889932 174889963 -67774390 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 279 255 29 0 chr1 174889968 174890070 -67774283 + L1MEc LINE L1 1317 1421 -4975 357 278 0 0 chr1 174891333 174891405 -67772948 - L2 LINE L2 0 3272 3201 26 64 0 0 chr1 174891919 174891966 -67772387 + AT_rich Low_complexity Low_complexity 1 47 0 189 0 0 0 chr1 174892532 174892553 -67771800 + (TC)n Simple_repeat Simple_repeat 2 22 0 273 276 0 17 chr1 174892981 174893039 -67771314 - MIR SINE MIR -113 95 39 415 265 83 17 chr1 174893700 174893881 -67770472 - L2 LINE L2 -35 3278 3086 940 288 156 12 chr1 174893892 174894309 -67770044 - L2 LINE L2 -661 2653 2177 21 0 0 0 chr1 174894662 174894683 -67769670 + AT_rich Low_complexity Low_complexity 1 21 0 239 272 192 0 chr1 174894689 174894814 -67769539 + L1ME4a LINE L1 5973 6121 0 28467 106 65 9 chr1 174895966 174901768 -67762585 + L1PA7 LINE L1 13 6150 -4 463 133 13 0 chr1 174902331 174902406 -67761947 + AluJ/FRAM SINE Alu 224 299 -13 256 245 245 20 chr1 174903138 174903285 -67761068 + MIR SINE MIR 39 218 -44 309 299 52 0 chr1 174903470 174903567 -67760786 + L3 LINE CR1 692 793 -784 439 223 32 0 chr1 174903861 174903955 -67760398 + MER94 DNA DNA 38 134 0 535 176 73 85 chr1 174904047 174904212 -67760141 - MIR SINE MIR -15 247 85 948 322 75 48 chr1 174904424 174904736 -67759617 + L3 LINE CR1 973 1310 -267 319 210 111 134 chr1 174904736 174904913 -67759440 + MER112 DNA MER1_type 1 172 -84 1701 201 13 3 chr1 174904913 174905221 -67759132 - AluJb SINE Alu -1 311 1 319 210 111 134 chr1 174905221 174905305 -67759048 + MER112 DNA MER1_type 172 256 0 948 322 75 48 chr1 174905305 174905579 -67758774 + L3 LINE CR1 1310 1575 -2 328 195 0 12 chr1 174905690 174905772 -67758581 + GA-rich Low_complexity Low_complexity 4 84 0 644 314 138 39 chr1 174907410 174907883 -67756470 + L1MEd LINE L1 81 505 -5614 466 259 127 0 chr1 174907883 174908041 -67756312 - MER5B DNA MER1_type 0 178 1 1216 65 0 0 chr1 174908046 174908200 -67756153 + L1PA11 LINE L1 6019 6172 -2 644 314 138 39 chr1 174908200 174908392 -67755961 + L1MEd LINE L1 508 819 -5300 308 298 19 57 chr1 174908409 174908671 -67755682 + L1MEd LINE L1 897 1148 -4971 368 261 150 50 chr1 174908773 174908853 -67755500 + L1MEd LINE L1 1214 1285 -4844 2481 88 0 0 chr1 174908853 174909158 -67755195 + AluSx SINE Alu 1 305 -7 368 261 150 50 chr1 174909158 174909257 -67755096 + L1MEd LINE L1 1285 1411 -4718 1793 168 24 0 chr1 174909579 174909810 -67754543 + L1ME1 LINE L1 5479 5722 -444 2249 133 19 24 chr1 174909810 174910186 -67754167 + THE1C LTR MaLR 1 374 -1 1793 168 24 0 chr1 174910186 174910293 -67754060 + L1ME1 LINE L1 5722 5825 -341 * 8246 192 68 105 chr1 174910291 174911040 -67753313 + L1MCa LINE L1 32 807 -5619 2205 105 46 40 chr1 174911040 174911413 -67752940 + THE1C LTR MaLR 1 375 0 8246 192 68 105 chr1 174911413 174911867 -67752486 + L1MCa LINE L1 807 1276 -5150 2279 66 0 24 chr1 174911867 174912154 -67752199 + AluSc SINE Alu 24 303 -6 8246 192 68 105 chr1 174912154 174912476 -67751877 + L1MCa LINE L1 1276 1608 -4818 671 164 0 55 chr1 174912476 174912604 -67751749 + FLAM_C SINE Alu 1 121 -22 207 0 0 0 chr1 174912604 174912627 -67751726 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 8246 192 68 105 chr1 174912627 174913051 -67751302 + L1MCa LINE L1 1607 2045 -4381 225 0 0 0 chr1 174913051 174913076 -67751277 + (CA)n Simple_repeat Simple_repeat 2 26 0 8246 192 68 105 chr1 174913076 174913452 -67750901 + L1MCa LINE L1 2045 2433 -3993 2344 97 0 3 chr1 174913452 174913762 -67750591 + AluSp SINE Alu 1 309 -4 8246 192 68 105 chr1 174913762 174914425 -67749928 + L1MCa LINE L1 2433 3119 -3307 715 170 0 57 chr1 174914425 174914566 -67749787 + FLAM_C SINE Alu 2 134 -9 8246 192 68 105 chr1 174914566 174914775 -67749578 + L1MCa LINE L1 3119 3334 -3092 2539 65 3 0 chr1 174914775 174915083 -67749270 + AluSp SINE Alu 3 311 -2 8246 192 68 105 chr1 174915083 174916354 -67747999 + L1MCa LINE L1 3334 4593 -1833 515 243 59 52 chr1 174916500 174916636 -67747717 + MIR SINE MIR 20 156 -106 496 166 185 7 chr1 174916692 174916843 -67747510 + L1 LINE L1 4210 4387 -1759 221 56 0 28 chr1 174916844 174916880 -67747473 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 42669 35 1 2 chr1 174916880 174923015 -67741338 - L1PA3 LINE L1 -24 6131 1 1214 132 19 105 chr1 174923028 174923083 -67741270 + L1MCa LINE L1 4675 4733 -1693 6109 23 0 0 chr1 174923083 174923786 -67740567 + L1PA4 LINE L1 5447 6149 -6 1214 132 19 105 chr1 174923786 174924055 -67740298 + L1MCa LINE L1 4733 4971 -1455 277 200 100 0 chr1 174924251 174924341 -67740012 + MER5C DNA MER1_type 164 262 -62 2354 145 16 0 chr1 174924346 174924733 -67739620 - MER57A LTR ERV1 -10 393 1 1139 140 30 25 chr1 174924733 174924968 -67739385 - MER57A-int LTR ERV1 0 7537 7302 213 39 0 0 chr1 174924968 174924994 -67739359 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 650 126 71 31 chr1 174925016 174925143 -67739210 - LTR54B LTR ERV1 -366 132 1 354 319 106 11 chr1 174929834 174930107 -67734246 + L1M4 LINE L1 5002 5300 -846 231 244 35 0 chr1 174930115 174930201 -67734152 + L1M LINE L1 5317 5405 -900 30 59 0 0 chr1 174930364 174930415 -67733938 + AT_rich Low_complexity Low_complexity 1 51 0 2320 97 0 0 chr1 174930529 174930828 -67733525 - AluY SINE Alu -12 299 1 438 128 263 0 chr1 174930838 174930971 -67733382 + L1ME4a LINE L1 5838 6005 -116 1759 181 14 3 chr1 174930977 174931270 -67733083 + AluJb SINE Alu 1 296 -16 978 281 8 11 chr1 174931785 174932045 -67732308 - MIR SINE MIR -2 260 2 430 286 62 6 chr1 174934018 174934179 -67730174 + MIR SINE MIR 20 189 -73 224 328 82 37 chr1 174934286 174934420 -67729933 + L2 LINE L2 3173 3312 -1 184 185 0 0 chr1 174935384 174935411 -67728942 + L2 LINE L2 3263 3289 -24 2196 123 0 10 chr1 174936008 174936316 -67728037 + AluSx SINE Alu 1 305 -7 2269 100 13 0 chr1 174936846 174937146 -67727207 - AluSc SINE Alu -5 304 1 593 298 42 57 chr1 174937942 174938146 -67726207 - L1M4 LINE L1 -2217 3929 3724 1718 181 0 20 chr1 174938146 174938444 -67725909 - AluJb SINE Alu -20 292 1 663 159 8 45 chr1 174938453 174938585 -67725768 - FLAM_C SINE Alu -6 127 1 593 298 42 57 chr1 174938585 174938988 -67725365 - L1M4 LINE L1 -2430 3716 3321 513 300 52 20 chr1 174939219 174939469 -67724884 - MIR SINE MIR -2 260 3 2594 140 74 54 chr1 174939798 174940268 -67724085 - L1MB3 LINE L1 -8 6175 5716 432 55 0 0 chr1 174940268 174940323 -67724030 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2280 82 0 4 chr1 174940323 174940604 -67723749 - AluSc SINE Alu -29 280 1 2594 140 74 54 chr1 174940604 174940637 -67723716 - L1MB3 LINE L1 -467 5716 5685 815 142 0 24 chr1 174940637 174940764 -67723589 - FLAM_C SINE Alu -9 124 1 2594 140 74 54 chr1 174940764 174940836 -67723517 - L1MB3 LINE L1 -498 5685 5586 1097 223 53 0 chr1 174941193 174941440 -67722913 + MIR SINE MIR 2 261 -1 913 163 7 7 chr1 174941450 174941603 -67722750 - AluJb SINE Alu -23 289 137 48 0 0 0 chr1 174941649 174941697 -67722656 + AT_rich Low_complexity Low_complexity 1 48 0 345 237 13 0 chr1 174942723 174942799 -67721554 - MIR3 SINE MIR -11 197 121 27 29 0 0 chr1 174943431 174943465 -67720888 + AT_rich Low_complexity Low_complexity 1 34 0 245 149 0 0 chr1 174944345 174944392 -67719961 + Alu SINE Alu 248 294 -8 6101 132 56 20 chr1 174944877 174945339 -67719014 - L1MA4 LINE L1 -29 6271 5827 342 0 0 0 chr1 174945339 174945377 -67718976 + (TG)n Simple_repeat Simple_repeat 2 39 0 6101 132 56 20 chr1 174945377 174947019 -67717334 - L1MA4 LINE L1 -473 5827 4081 189 0 0 0 chr1 174948488 174948509 -67715844 + (TG)n Simple_repeat Simple_repeat 2 22 0 842 130 0 8 chr1 174949208 174949331 -67715022 + AluSq/x SINE Alu 3 124 -188 1101 146 60 5 chr1 174949531 174949730 -67714623 + MER46A DNA MER2_type 2 211 -25 1674 197 23 10 chr1 174949731 174950031 -67714322 - AluJo SINE Alu -3 309 6 189 0 0 0 chr1 174950061 174950082 -67714271 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1675 167 26 0 chr1 174950083 174950353 -67714000 - AluJo SINE Alu -35 277 1 396 243 59 52 chr1 174950510 174950646 -67713707 - L2 LINE L2 0 3313 3177 228 368 125 28 chr1 174950797 174951085 -67713268 - L2 LINE L2 -338 2976 2661 403 175 18 26 chr1 174951085 174951199 -67713154 - Charlie5 DNA MER1_type 0 2624 2512 449 117 39 0 chr1 174952743 174952820 -67711533 + MADE1 DNA Mariner 1 80 0 511 285 50 6 chr1 174954315 174954494 -67709859 + L1MC4a LINE L1 5743 5929 -1879 237 311 0 0 chr1 174955730 174955804 -67708549 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 1964 120 0 32 chr1 174956606 174956890 -67707463 + AluSx SINE Alu 1 275 -37 737 67 0 9 chr1 174956892 174956997 -67707356 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 2842 3 0 0 chr1 174959708 174960014 -67704339 + AluY SINE Alu 1 306 -5 199 161 0 0 chr1 174960014 174960045 -67704308 + L2 LINE L2 3137 3167 -105 611 296 102 0 chr1 174960394 174960600 -67703753 - MIR SINE MIR -16 246 20 232 211 96 0 chr1 174960693 174960745 -67703608 - L2 LINE L2 0 3272 3216 2580 133 44 35 chr1 174960922 174961282 -67703071 - LOR1b LTR ERV1 0 461 95 2280 114 3 0 chr1 174961282 174961589 -67702764 + AluSg SINE Alu 1 308 -2 2580 133 44 35 chr1 174961589 174961685 -67702668 - LOR1b LTR ERV1 -366 95 1 209 200 0 0 chr1 174962730 174962770 -67701583 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 185 364 18 0 chr1 174962801 174962856 -67701497 - L2 LINE L2 -76 3196 3141 249 211 0 0 chr1 174962909 174962966 -67701387 + GA-rich Low_complexity Low_complexity 4 60 0 2906 13 0 0 chr1 174963110 174963428 -67700925 - AluYb8 SINE Alu 0 318 1 3416 119 113 83 chr1 174963728 174964490 -67699863 - LTR1 LTR ERV1 0 785 1 180 125 0 0 chr1 174964830 174964862 -67699491 + (T)n Simple_repeat Simple_repeat 1 32 0 2941 127 51 2 chr1 174965240 174965714 -67698639 + LOR1a LTR ERV1 1 497 0 18568 98 46 39 chr1 174965714 174967396 -67696957 + LOR1a-int LTR ERV1 1 1670 -6450 1808 134 34 47 chr1 174967396 174967694 -67696659 + AluJb SINE Alu 13 306 -6 18568 98 46 39 chr1 174967694 174968189 -67696164 + LOR1a-int LTR ERV1 1670 2160 -5960 2248 115 0 0 chr1 174968189 174968485 -67695868 - AluSx SINE Alu -16 296 1 18568 98 46 39 chr1 174968485 174968906 -67695447 + LOR1a-int LTR ERV1 2160 2577 -5543 1906 161 0 41 chr1 174968906 174969223 -67695130 - AluJo SINE Alu -8 304 1 18568 98 46 39 chr1 174969223 174969930 -67694423 + LOR1a-int LTR ERV1 2577 3331 -4789 831 69 0 0 chr1 174969931 174970032 -67694321 - AluSg SINE Alu -209 101 1 968 34 0 0 chr1 174970065 174970183 -67694170 - L1PA4 LINE L1 -3 6152 6035 7431 137 35 39 chr1 174970183 174971503 -67692850 + LOR1a-int LTR ERV1 4750 6064 -2056 550 118 0 12 chr1 174971502 174971587 -67692766 + LOR1a-int LTR ERV1 8030 8113 -7 * 3173 133 18 4 chr1 174971595 174972085 -67692268 + LOR1a LTR ERV1 1 497 0 524 228 148 0 chr1 174972406 174972555 -67691798 - MIR SINE MIR 0 262 92 419 358 22 0 chr1 174972604 174972738 -67691615 - L2 LINE L2 -1 3312 3176 251 176 0 0 chr1 174972763 174972814 -67691539 + Tigger1 DNA MER2_type 10 60 -2358 5821 67 3 0 chr1 174972822 174973595 -67690758 - L1PA7 LINE L1 -15 6139 5365 13619 113 47 23 chr1 174973595 174975437 -67688916 + Tigger1 DNA MER2_type 61 1970 -448 1501 184 0 65 chr1 174975437 174975758 -67688595 - AluJo SINE Alu -12 300 1 13619 113 47 23 chr1 174975758 174976214 -67688139 + Tigger1 DNA MER2_type 1970 2414 -4 301 235 0 15 chr1 174976273 174976341 -67688012 - L2 LINE L2 -188 3084 3018 342 231 107 8 chr1 174976746 174976867 -67687486 + MLT1J LTR MaLR 379 511 0 229 274 0 0 chr1 174976995 174977046 -67687307 - L2 LINE L2 -6 3307 3257 2378 92 6 19 chr1 174977081 174977396 -67686957 - AluSq SINE Alu -2 311 1 290 353 50 67 chr1 174977413 174977696 -67686657 - L2 LINE L2 -79 3193 2916 1356 193 218 35 chr1 174978003 174978438 -67685915 + MLT2B2 LTR ERVL 1 515 0 2503 113 56 47 chr1 174978503 174978929 -67685424 - MSTB1 LTR MaLR -2 430 1 3019 155 19 2 chr1 175079080 175079614 -67584739 - L1MA7 LINE L1 -375 5916 5374 423 181 0 11 chr1 175079614 175079708 -67584645 + L1 LINE L1 5138 5230 -916 * 6210 119 45 25 chr1 175079687 175079756 -67584597 + L1MA5A LINE L1 4525 4591 -1706 1777 146 9 73 chr1 175079756 175080050 -67584303 + AluSx SINE Alu 1 273 -39 204 67 0 0 chr1 175080050 175080080 -67584273 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1777 146 9 73 chr1 175080080 175080115 -67584238 + AluSx SINE Alu 273 309 -3 6210 119 45 25 chr1 175080115 175080753 -67583600 + L1MA5A LINE L1 4591 5215 -1082 2198 120 0 7 chr1 175080753 175081053 -67583300 - AluSx SINE Alu -14 298 1 6210 119 45 25 chr1 175081053 175081064 -67583289 + L1MA5A LINE L1 5215 5224 -1073 2593 40 7 0 chr1 175081064 175081365 -67582988 - AluY SINE Alu -8 303 1 6210 119 45 25 chr1 175081365 175082361 -67581992 + L1MA5A LINE L1 5224 6297 0 832 129 27 0 chr1 175082355 175082502 -67581851 + L1 LINE L1 5219 5369 -777 * 335 307 84 4 chr1 175082514 175082803 -67581550 + L1MC4a LINE L1 5612 5885 -285 21 36 0 0 chr1 175083048 175083076 -67581277 + AT_rich Low_complexity Low_complexity 1 28 0 670 245 172 13 chr1 175083252 175083636 -67580717 - L1ME4a LINE L1 -104 6017 5573 309 291 45 52 chr1 175083952 175084086 -67580267 - MIR SINE MIR -51 211 79 2229 115 3 0 chr1 175084112 175084416 -67579937 - AluSx SINE Alu -2 310 6 358 288 50 7 chr1 175084456 175084595 -67579758 + L1ME LINE L1 3 147 -5923 337 217 74 29 chr1 175084593 175084768 -67579585 + L1M4 LINE L1 3037 3219 -2927 * 2172 50 136 0 chr1 175084771 175085108 -67579245 + L1PA3 LINE L1 5790 6167 0 1597 263 40 5 chr1 175085113 175085688 -67578665 + L1M4 LINE L1 3223 3817 -2329 4329 55 14 25 chr1 175085688 175086737 -67577616 - MER11A LTR ERVK 0 1266 1 2012 243 63 14 chr1 175086737 175087432 -67576921 + L1M4 LINE L1 3812 4540 -1606 498 153 0 0 chr1 175087432 175087517 -67576836 - AluJb SINE Alu -8 304 220 531 140 0 0 chr1 175087527 175087620 -67576733 + L1M LINE L1 5277 5369 -922 1381 188 0 5 chr1 175087668 175087886 -67576467 - AluJb SINE Alu -93 219 3 561 204 148 21 chr1 175087957 175088099 -67576254 - FRAM SINE Alu -16 160 1 501 130 8 172 chr1 175088104 175088308 -67576045 + L1M4 LINE L1 4615 4784 -1362 189 0 0 0 chr1 175088979 175089000 -67575353 + (CA)n Simple_repeat Simple_repeat 2 22 0 336 233 14 0 chr1 175089335 175089408 -67574945 - MIR SINE MIR -120 142 69 558 236 121 0 chr1 175090529 175090669 -67573684 - MIR SINE MIR -84 178 22 235 169 77 0 chr1 175090669 175090734 -67573619 - L1MA4A LINE L1 -1 6302 6233 226 314 210 0 chr1 175090890 175091014 -67573339 + MIR SINE MIR 113 262 0 2025 94 4 4 chr1 175091071 175091337 -67573016 - AluSx SINE Alu -44 268 3 312 336 8 8 chr1 175092024 175092143 -67572210 + MIR3 SINE MIR 83 201 -7 220 336 59 8 chr1 175092338 175092457 -67571896 - L2 LINE L2 0 3272 3148 286 257 29 14 chr1 175092987 175093057 -67571296 + MIR SINE MIR 36 106 -102 2039 160 0 0 chr1 175093166 175093460 -67570893 + AluSx SINE Alu 1 294 -18 1044 154 12 0 chr1 175093815 175093977 -67570376 + FAM SINE Alu 1 164 -11 243 275 29 14 chr1 175094237 175094306 -67570047 + Charlie8 DNA MER1_type 1 70 -2347 418 307 70 17 chr1 175094490 175094731 -67569622 + L2 LINE L2 1983 2236 -1078 620 185 8 31 chr1 175094802 175094932 -67569421 - FLAM_A SINE Alu -3 130 4 261 200 146 9 chr1 175094988 175095098 -67569255 - L1ME4a LINE L1 -15 6106 5982 321 242 42 42 chr1 175095205 175095300 -67569053 + L2 LINE L2 3219 3313 0 230 176 20 0 chr1 175095309 175095360 -67568993 + (TATATG)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr1 175099923 175099945 -67564408 + AT_rich Low_complexity Low_complexity 1 22 0 307 351 11 11 chr1 175100434 175100528 -67563825 - L2 LINE L2 -58 3214 3121 1706 153 29 4 chr1 175100587 175100862 -67563491 + MER2 DNA MER2_type 64 345 0 181 358 0 30 chr1 175100868 175100935 -67563418 - L2 LINE L2 -208 3064 3000 1707 170 99 35 chr1 175101024 175101455 -67562898 + LTR48 LTR ERV1 1 409 -247 556 133 52 51 chr1 175101460 175101663 -67562690 + MER39 LTR ERV1 587 707 0 318 310 88 29 chr1 175102044 175102215 -67562138 + L1ME4a LINE L1 4109 4289 -1857 373 346 108 32 chr1 175102222 175102786 -67561567 + L1ME4a LINE L1 4312 4918 -1228 690 291 69 40 chr1 175103266 175103689 -67560664 + L1ME4a LINE L1 5474 5908 -213 252 77 0 0 chr1 175103924 175103963 -67560390 + (GA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr1 175104331 175104358 -67559995 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 374 295 52 72 chr1 175105665 175105858 -67558495 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr1 175106460 175106488 -67557865 + AT_rich Low_complexity Low_complexity 1 28 0 242 292 49 14 chr1 175108247 175108391 -67555962 + L1ME LINE L1 5584 5732 -389 2082 137 16 0 chr1 175109524 175109831 -67554522 + AluSx SINE Alu 1 312 0 1998 115 0 41 chr1 175109927 175110241 -67554112 + AluSx SINE Alu 1 301 -11 957 213 41 27 chr1 175110492 175110713 -67553640 - MER58A DNA MER1_type 0 224 1 233 260 198 21 chr1 175111313 175111409 -67552944 - MIR SINE MIR -123 139 27 301 279 72 45 chr1 175112237 175112348 -67552005 - MIR SINE MIR -115 147 34 444 209 122 9 chr1 175112529 175112644 -67551709 + L2 LINE L2 3186 3313 0 346 307 17 95 chr1 175112702 175112881 -67551472 + MIR3 SINE MIR 8 172 -36 245 314 171 63 chr1 175113874 175114126 -67550227 - L2 LINE L2 0 3272 2994 324 327 123 78 chr1 175114153 175114796 -67549557 - L2 LINE L2 -768 2546 1875 370 341 72 30 chr1 175115252 175115419 -67548934 + MIR3 SINE MIR 20 193 -15 2157 115 0 3 chr1 175116255 175116551 -67547802 - AluSq SINE Alu -18 295 1 2263 102 0 0 chr1 175117083 175117377 -67546976 - AluY SINE Alu -17 294 1 1476 109 0 5 chr1 175118223 175118433 -67545920 + AluSg/x SINE Alu 89 297 -15 314 190 0 17 chr1 175118751 175118809 -67545544 + L2 LINE L2 3213 3269 -3 463 303 130 3 chr1 175118831 175119051 -67545302 + MIR SINE MIR 3 232 -30 194 338 120 38 chr1 175119265 175119398 -67544955 + L3 LINE CR1 208 351 -1226 28 48 0 0 chr1 175119419 175119461 -67544892 + AT_rich Low_complexity Low_complexity 1 42 0 549 321 109 33 chr1 175119731 175120099 -67544254 + L3 LINE CR1 589 984 -593 366 301 66 55 chr1 175120285 175120468 -67543885 + L3 LINE CR1 1040 1224 -353 392 351 54 7 chr1 175120544 175120692 -67543661 + L2 LINE L2 3114 3268 -4 1019 241 82 0 chr1 175120695 175120927 -67543426 + MIR SINE MIR 2 252 -10 342 314 152 25 chr1 175121129 175121412 -67542941 + L2 LINE L2 2949 3267 -5 297 167 56 0 chr1 175121800 175121854 -67542499 - L2 LINE L2 0 3272 3216 421 179 0 0 chr1 175122217 175122284 -67542069 - L2 LINE L2 0 3313 3247 1078 123 22 0 chr1 175123147 175123326 -67541027 - L1MA8 LINE L1 -3 6288 6106 279 114 0 0 chr1 175124241 175124285 -67540068 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr1 175124844 175124872 -67539481 + AT_rich Low_complexity Low_complexity 1 28 0 650 255 66 10 chr1 175125449 175125645 -67538708 - MIR SINE MIR -5 257 51 989 18 0 0 chr1 175125661 175125773 -67538580 - AluY SINE Alu -12 299 188 22 0 0 73 chr1 175126564 175126605 -67537748 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr1 175126680 175126706 -67537647 + AT_rich Low_complexity Low_complexity 1 26 0 43 35 0 0 chr1 175127836 175127893 -67536460 + AT_rich Low_complexity Low_complexity 1 57 0 413 248 157 31 chr1 175128018 175128312 -67536041 - L1ME4a LINE L1 -188 5933 5603 814 214 148 9 chr1 175128333 175128543 -67535810 - MIR SINE MIR -16 246 8 186 43 0 0 chr1 175129017 175129040 -67535313 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr1 175129331 175129352 -67535001 + AT_rich Low_complexity Low_complexity 1 21 0 199 347 93 40 chr1 175129887 175130037 -67534316 - MIR3 SINE MIR -9 199 42 878 255 42 0 chr1 175130051 175130263 -67534090 - MER58A DNA MER1_type 0 224 4 331 282 84 53 chr1 175130372 175130503 -67533850 + MIR3 SINE MIR 5 139 -69 1832 136 7 0 chr1 175132161 175132433 -67531920 + AluSx SINE Alu 1 274 -38 193 331 134 14 chr1 175133224 175133366 -67530987 - L2 LINE L2 -3 3310 3152 2173 118 0 7 chr1 175133755 175134059 -67530294 - AluSc SINE Alu -7 302 1 21 36 0 0 chr1 175134875 175134903 -67529450 + AT_rich Low_complexity Low_complexity 1 28 0 534 283 98 35 chr1 175135167 175135451 -67528902 + L1ME LINE L1 5391 5698 -423 1809 161 7 16 chr1 175135451 175135761 -67528592 + AluJo SINE Alu 1 307 -5 534 283 98 35 chr1 175135761 175135791 -67528562 + L1ME LINE L1 5698 5725 -396 261 207 0 17 chr1 175135813 175135871 -67528482 + MER112 DNA MER1_type 152 208 -52 3258 104 9 37 chr1 175136937 175137048 -67527305 + L1MA3 LINE L1 5782 5895 -410 2204 94 0 17 chr1 175137048 175137347 -67527006 + AluY SINE Alu 3 296 -15 3258 104 9 37 chr1 175137347 175137774 -67526579 + L1MA3 LINE L1 5895 6305 0 21 0 0 0 chr1 175138319 175138340 -67526013 + AT_rich Low_complexity Low_complexity 1 21 0 2286 88 0 0 chr1 175138699 175138994 -67525359 + AluSc SINE Alu 1 295 -14 2086 116 7 0 chr1 175139340 175139624 -67524729 + AluSx SINE Alu 3 288 -24 35 0 0 0 chr1 175139624 175139659 -67524694 + AT_rich Low_complexity Low_complexity 1 35 0 610 245 109 22 chr1 175140308 175140492 -67523861 + MIR SINE MIR 45 244 -18 262 288 158 20 chr1 175141245 175141391 -67522962 + MER5B DNA MER1_type 7 172 -6 341 271 58 86 chr1 175143006 175143297 -67521056 - L1ME4a LINE L1 -5 6116 5834 751 260 123 0 chr1 175143332 175143551 -67520802 - MIR SINE MIR 0 262 17 461 269 45 31 chr1 175143567 175143793 -67520560 - L1ME4a LINE L1 -410 5758 5536 348 184 234 0 chr1 175143816 175143957 -67520396 - L1ME4a LINE L1 -2339 5469 5296 260 339 71 11 chr1 175144110 175144393 -67519960 - L1ME4a LINE L1 -1114 5032 4733 312 172 52 30 chr1 175144394 175144528 -67519825 + (TTAAA)n Simple_repeat Simple_repeat 1 137 0 35 63 0 0 chr1 175144528 175144591 -67519762 + AT_rich Low_complexity Low_complexity 1 63 0 288 248 134 13 chr1 175144656 175144805 -67519548 - L1ME4a LINE L1 -1575 4571 4405 277 230 90 10 chr1 175144900 175145000 -67519353 + L1MEd LINE L1 46 153 -5966 520 242 172 8 chr1 175145219 175145463 -67518890 - HAL1b LINE L1 -268 1080 797 4441 171 53 30 chr1 175145465 175146267 -67518086 + Tigger6a DNA MER2_type 2 831 -766 2373 96 0 3 chr1 175146267 175146580 -67517773 + AluSq SINE Alu 1 312 -1 4441 171 53 30 chr1 175146580 175146726 -67517627 + Tigger6a DNA MER2_type 831 972 -111 860 256 67 47 chr1 175146726 175147171 -67517182 - HAL1b LINE L1 -568 780 327 26 0 0 0 chr1 175147508 175147534 -67516819 + AT_rich Low_complexity Low_complexity 1 26 0 2040 115 11 0 chr1 175147554 175147840 -67516513 - AluSx SINE Alu -23 289 1 252 0 0 0 chr1 175148626 175148654 -67515699 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2380 236 24 8 chr1 175148781 175149399 -67514954 + L1ME1 LINE L1 4683 5310 -836 396 0 0 0 chr1 175149401 175149445 -67514908 + (TA)n Simple_repeat Simple_repeat 2 45 0 2520 207 39 86 chr1 175149445 175150286 -67514067 + L1ME1 LINE L1 5363 6164 -2 813 90 103 7 chr1 175150588 175150733 -67513620 + L1MB3 LINE L1 6022 6180 -3 755 233 65 43 chr1 175151641 175151873 -67512480 - MIR SINE MIR -24 238 2 217 200 0 0 chr1 175151995 175152030 -67512323 - L2 LINE L2 -16 3256 3222 186 170 85 21 chr1 175152216 175152263 -67512090 - L2 LINE L2 0 3272 3223 441 302 48 8 chr1 175152355 175152481 -67511872 - MIR SINE MIR -112 150 20 21 0 0 0 chr1 175153293 175153314 -67511039 + AT_rich Low_complexity Low_complexity 1 21 0 2252 119 0 6 chr1 175153319 175153630 -67510723 + AluSx SINE Alu 4 312 0 340 115 16 16 chr1 175154128 175154189 -67510164 - L1MB2 LINE L1 -85 6086 6026 2342 96 0 16 chr1 175155652 175155964 -67508389 - AluSx SINE Alu -5 307 1 195 100 0 0 chr1 175156306 175156336 -67508017 + (TA)n Simple_repeat Simple_repeat 1 30 0 2273 84 7 3 chr1 175156907 175157204 -67507149 - AluSp SINE Alu -15 298 1 549 257 128 5 chr1 175157896 175158083 -67506270 + MIR SINE MIR 4 213 -49 370 39 0 0 chr1 175158559 175158610 -67505743 - AluSp/q SINE Alu -3 300 250 291 292 99 11 chr1 175158634 175158983 -67505370 - L1ME LINE L1 -459 5662 5280 406 307 114 15 chr1 175160624 175160826 -67503527 - MIR SINE MIR -38 224 3 208 310 257 42 chr1 175161096 175161657 -67502696 + L2 LINE L2 1946 2695 -619 219 216 20 20 chr1 175161657 175161708 -67502645 + MIR SINE MIR 101 151 -111 208 310 257 42 chr1 175161708 175161719 -67502634 + L2 LINE L2 2695 2702 -612 1485 117 96 0 chr1 175161721 175161960 -67502393 - MER1B DNA MER1_type 0 339 78 286 354 72 47 chr1 175162345 175162560 -67501793 + L2 LINE L2 2973 3198 -74 994 221 53 90 chr1 175162560 175162971 -67501382 - MSTD LTR MaLR 0 396 1 286 354 72 47 chr1 175162971 175163032 -67501321 + L2 LINE L2 3198 3256 -16 240 192 51 90 chr1 175163054 175163132 -67501221 + MIR SINE MIR 118 192 -70 2241 106 0 0 chr1 175163819 175164144 -67500209 + AluSq SINE Alu 2 326 0 618 246 15 0 chr1 175165369 175165503 -67498850 + MIR SINE MIR 62 197 -65 223 264 132 0 chr1 175165508 175165599 -67498754 + MIR SINE MIR 156 258 -4 27 29 0 0 chr1 175165717 175165751 -67498602 + AT_rich Low_complexity Low_complexity 1 34 0 817 145 0 0 chr1 175165762 175165879 -67498474 - FLAM_C SINE Alu -16 117 1 234 229 31 0 chr1 175166467 175166563 -67497790 + (TA)n Simple_repeat Simple_repeat 2 100 0 180 77 0 0 chr1 175167315 175167341 -67497012 + (CA)n Simple_repeat Simple_repeat 1 26 0 978 180 12 6 chr1 175168418 175168579 -67495774 + FRAM SINE Alu 1 162 -14 392 246 39 23 chr1 175168676 175168735 -67495618 - MER94 DNA DNA 0 134 77 2289 118 33 36 chr1 175168735 175169100 -67495253 - THE1B LTR MaLR 0 364 1 392 246 39 23 chr1 175169100 175169170 -67495183 - MER94 DNA DNA -57 77 3 2129 106 7 13 chr1 175170237 175170540 -67493813 + AluSx SINE Alu 3 303 -9 23 0 0 0 chr1 175170580 175170603 -67493750 + AT_rich Low_complexity Low_complexity 1 23 0 2186 103 26 0 chr1 175170735 175171037 -67493316 - AluSq SINE Alu -3 310 1 423 293 92 29 chr1 175171139 175171313 -67493040 - MIR SINE MIR -46 216 32 216 265 0 0 chr1 175171526 175171594 -67492759 + T-rich Low_complexity Low_complexity 1 68 0 2023 147 3 3 chr1 175171639 175171945 -67492408 + AluSx SINE Alu 1 306 -6 2157 94 13 7 chr1 175172396 175172695 -67491658 - AluSx SINE Alu -11 301 1 1662 153 6 32 chr1 175172874 175173188 -67491165 + MER1B DNA MER1_type 1 306 -33 599 287 16 37 chr1 175173227 175173471 -67490882 - L2 LINE L2 -877 2437 2199 230 335 180 0 chr1 175173636 175173842 -67490511 - L2 LINE L2 -1138 2176 1934 25 31 0 0 chr1 175174402 175174434 -67489919 + AT_rich Low_complexity Low_complexity 1 32 0 431 48 16 0 chr1 175174526 175174588 -67489765 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 797 279 82 30 chr1 175174689 175175126 -67489227 - MLT1J LTR MaLR -49 462 3 2211 138 0 0 chr1 175175885 175176225 -67488128 - AluSx SINE Alu 0 312 1 2648 119 8 66 chr1 175176252 175176749 -67487604 + LTR9 LTR ERV1 1 468 -144 939 134 81 5 chr1 175176804 175177013 -67487340 + Charlie5 DNA MER1_type 2361 2585 -27 202 0 0 83 chr1 175177095 175177131 -67487222 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1678 158 0 54 chr1 175177139 175177437 -67486916 - AluJo SINE Alu -15 297 16 422 351 70 23 chr1 175177478 175177737 -67486616 - L3 LINE CR1 -58 1519 1249 2125 130 0 0 chr1 175178274 175178574 -67485779 + AluSx SINE Alu 1 300 -12 583 266 45 16 chr1 175178576 175178967 -67485386 + MLT1H LTR MaLR 97 543 -6 592 266 119 0 chr1 175179063 175179281 -67485072 + L2 LINE L2 2819 3062 -251 2835 100 26 32 chr1 175179335 175179928 -67484425 + MER4E LTR ERV1 1 766 0 2338 57 0 47 chr1 175180208 175180525 -67483828 + AluY SINE Alu 1 302 -9 807 257 102 30 chr1 175180562 175180924 -67483429 + MLT1D LTR MaLR 1 388 -117 308 321 83 0 chr1 175181017 175181126 -67483227 + MIR3 SINE MIR 58 175 -33 232 258 15 0 chr1 175181622 175181688 -67482665 + MLT1K LTR MaLR 522 588 0 2036 123 0 58 chr1 175181964 175182289 -67482064 - AluSx SINE Alu -6 306 1 246 95 0 0 chr1 175182361 175182403 -67481950 + (TG)n Simple_repeat Simple_repeat 1 42 0 1741 155 32 4 chr1 175182403 175182671 -67481682 - AluJb SINE Alu -31 281 3 189 0 0 0 chr1 175183333 175183354 -67480999 + (A)n Simple_repeat Simple_repeat 1 21 0 2364 93 3 3 chr1 175183666 175183968 -67480385 - AluSg SINE Alu -8 302 1 329 323 68 12 chr1 175183978 175184139 -67480214 - L1ME4a LINE L1 -3 6118 5949 32 26 0 0 chr1 175184629 175184668 -67479685 + AT_rich Low_complexity Low_complexity 1 39 0 349 293 20 34 chr1 175184889 175185036 -67479317 - LTR67 LTR ERVL -410 147 3 2745 208 39 34 chr1 175185145 175185213 -67479140 - L1ME1 LINE L1 -12 6154 6088 464 62 0 175 chr1 175185213 175185310 -67479043 + MADE1 DNA Mariner 1 80 0 2745 208 39 34 chr1 175185310 175185953 -67478400 - L1ME1 LINE L1 -78 6088 5439 1987 132 11 0 chr1 175185960 175186282 -67478071 + AluSx SINE Alu 1 325 0 1358 202 96 30 chr1 175186378 175186784 -67477569 + MSTB2 LTR MaLR 17 449 -8 844 282 83 81 chr1 175187330 175187813 -67476540 + L3 LINE CR1 649 1132 -445 254 310 148 38 chr1 175187841 175188094 -67476259 + L2 LINE L2 1883 2190 -1124 1530 167 65 4 chr1 175188094 175188369 -67475984 - AluJb SINE Alu -20 292 1 254 310 148 38 chr1 175188369 175188480 -67475873 + L2 LINE L2 2190 2287 -1027 4473 61 41 5 chr1 175188480 175189561 -67474792 + MER11A LTR ERVK 1 1266 0 512 297 134 49 chr1 175190242 175190629 -67473724 + L3 LINE CR1 1157 1576 -1 252 86 0 0 chr1 175191224 175191259 -67473094 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 903 207 88 111 chr1 175191843 175192205 -67472148 + MLT1H LTR MaLR 1 354 -195 279 299 0 0 chr1 175192329 175192406 -67471947 + MIR SINE MIR 60 136 -126 225 333 56 0 chr1 175192475 175192547 -67471806 - MIR SINE MIR -63 145 70 319 261 54 11 chr1 175192728 175192820 -67471533 + L2 LINE L2 3208 3303 -10 1273 25 44 0 chr1 175193878 175194036 -67470317 + L1PA6 LINE L1 5989 6153 -1 192 256 39 77 chr1 175194140 175194218 -67470135 + L2 LINE L2 3137 3211 -61 2113 121 7 0 chr1 175194633 175194922 -67469431 - AluSx SINE Alu -21 291 1 319 282 29 0 chr1 175195684 175195787 -67468566 + L2 LINE L2 3208 3313 0 1741 181 57 0 chr1 175197111 175197392 -67466961 - AluJo SINE Alu -15 297 1 1992 125 4 0 chr1 175198430 175198734 -67465619 + AluSx SINE Alu 5 309 0 325 263 153 8 chr1 175198896 175199014 -67465339 + L2 LINE L2 3173 3307 -6 216 97 0 0 chr1 175199081 175199112 -67465241 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 229 345 62 18 chr1 175199213 175199326 -67465027 + L2 LINE L2 3147 3264 -8 203 302 138 52 chr1 175201432 175201548 -67462805 - L2 LINE L2 0 3272 3147 282 289 22 67 chr1 175201833 175201968 -67462385 + MER91B DNA MER1_type 1 129 -61 502 209 9 19 chr1 175201983 175202088 -67462265 + MER91B DNA MER1_type 87 190 0 2256 122 0 7 chr1 175202289 175202593 -67461760 - AluSx SINE Alu -10 302 1 180 208 21 42 chr1 175202851 175202899 -67461454 - L3b LINE CR1 -246 1337 1291 230 294 39 33 chr1 175202917 175203070 -67461283 + MIR SINE MIR 102 255 -7 207 247 0 49 chr1 175203071 175203152 -67461201 + CT-rich Low_complexity Low_complexity 4 80 0 1279 205 104 101 chr1 175203778 175204194 -67460159 - L1ME1 LINE L1 -5 6161 5741 7980 12 0 0 chr1 175204194 175204887 -67459466 - L1PA3 LINE L1 -1 6154 5473 2889 13 0 0 chr1 175204887 175205196 -67459157 - AluY SINE Alu -2 309 1 7980 12 0 0 chr1 175205196 175205838 -67458515 - L1PA3 LINE L1 -681 5474 4833 1279 205 104 101 chr1 175205838 175205996 -67458357 - L1ME1 LINE L1 -425 5741 5585 242 300 12 0 chr1 175206551 175206631 -67457722 + MIR SINE MIR 68 148 -60 293 262 19 78 chr1 175207087 175207190 -67457163 + MER5B DNA MER1_type 74 170 -8 180 152 0 0 chr1 175207939 175207972 -67456381 + (TAG)n Simple_repeat Simple_repeat 3 35 0 298 261 122 0 chr1 175208019 175208134 -67456219 + MIR SINE MIR 48 176 -86 702 223 8 0 chr1 175208505 175208635 -67455718 + MER58B DNA MER1_type 210 340 -1 668 333 160 8 chr1 175209296 175209789 -67454564 + L3 LINE CR1 999 1566 -11 2537 77 0 3 chr1 175209927 175210239 -67454114 - AluY SINE Alu 0 311 1 223 290 56 16 chr1 175210435 175210560 -67453793 + MIR SINE MIR 64 192 -58 2177 117 3 16 chr1 175211914 175212221 -67452132 - AluSx SINE Alu -9 303 1 222 143 0 0 chr1 175212578 175212613 -67451740 + MER5B DNA MER1_type 1 35 -143 1873 137 0 19 chr1 175212657 175212928 -67451425 + AluSx SINE Alu 1 266 -46 251 32 0 0 chr1 175212934 175212965 -67451388 + MER5B DNA MER1_type 137 167 -11 313 288 71 57 chr1 175214523 175214735 -67449618 + L1ME4a LINE L1 5442 5656 -2152 312 315 0 0 chr1 175214764 175214853 -67449500 + L1MC4 LINE L1 6614 6702 -1340 21 0 0 0 chr1 175214854 175214875 -67449478 + AT_rich Low_complexity Low_complexity 1 21 0 282 269 66 50 chr1 175214886 175215068 -67449285 + L1ME4a LINE L1 5744 5928 -193 213 183 225 28 chr1 175315574 175315645 -67348708 - L2 LINE L2 0 3313 3229 1502 159 4 0 chr1 175315670 175315921 -67348432 + L1PA16 LINE L1 5893 6144 -22 1677 114 125 15 chr1 175316640 175316904 -67347449 - AluSg1 SINE Alu -16 293 1 256 253 35 58 chr1 175316982 175317069 -67347284 - L2 LINE L2 0 3272 3188 323 330 40 0 chr1 175317240 175317340 -67347013 - L2 LINE L2 -55 3217 3114 1655 226 115 42 chr1 175317452 175318001 -67346352 + MLT1E LTR MaLR 1 589 -4 363 243 0 40 chr1 175318764 175318838 -67345515 - L2 LINE L2 -5 3267 3197 477 291 58 93 chr1 175318838 175318969 -67345384 - MLT1L LTR MaLR 0 615 481 1620 174 33 33 chr1 175318969 175319268 -67345085 - AluJo SINE Alu -13 299 1 477 291 58 93 chr1 175319268 175319534 -67344819 - MLT1L LTR MaLR -134 481 232 421 284 182 17 chr1 175319875 175320171 -67344182 - L2 LINE L2 -420 2894 2550 329 329 82 61 chr1 175320884 175321164 -67343189 - L2 LINE L2 -58 3214 2929 2457 69 0 20 chr1 175321631 175321937 -67342416 + AluSq SINE Alu 1 300 -13 219 301 82 27 chr1 175322076 175322149 -67342204 - MIR3 SINE MIR -21 187 111 370 212 18 53 chr1 175322151 175322264 -67342089 - LTR27 LTR ERV1 -2 634 526 646 138 5 20 chr1 175322265 175322400 -67341953 - LTR27 LTR ERV1 -213 423 298 268 217 14 0 chr1 175322367 175322436 -67341917 - LTR1 LTR ERV1 -595 190 121 * 934 160 0 18 chr1 175322474 175322643 -67341710 - LTR28 LTR ERV1 -854 166 1 498 241 23 75 chr1 175323311 175323485 -67340868 - MER5B DNA MER1_type -3 175 11 38 61 0 0 chr1 175323719 175323785 -67340568 + AT_rich Low_complexity Low_complexity 1 66 0 1410 100 0 11 chr1 175323860 175324050 -67340303 - AluSg/x SINE Alu -4 306 119 21 82 0 0 chr1 175324464 175324513 -67339840 + AT_rich Low_complexity Low_complexity 1 49 0 2114 148 0 7 chr1 175324735 175325045 -67339308 - AluJb SINE Alu -2 310 3 2322 97 3 0 chr1 175326008 175326306 -67338047 - AluSp SINE Alu -14 299 1 391 259 38 8 chr1 175326367 175326498 -67337855 + L1ME4a LINE L1 5961 6095 -26 230 339 134 13 chr1 175326667 175326725 -67337628 + L3 LINE CR1 1326 1376 -201 2486 90 0 3 chr1 175326725 175327036 -67337317 - AluSg SINE Alu 0 310 1 230 339 134 13 chr1 175327036 175327201 -67337152 + L3 LINE CR1 1376 1576 -1 26 30 0 0 chr1 175327460 175327493 -67336860 + AT_rich Low_complexity Low_complexity 1 33 0 425 106 0 0 chr1 175327493 175327559 -67336794 - L1MA3 LINE L1 -1 6304 6239 607 287 92 23 chr1 175328310 175328571 -67335782 + L2 LINE L2 2508 2786 -528 212 361 154 48 chr1 175328633 175328841 -67335512 + L2 LINE L2 3042 3271 -1 2132 132 0 3 chr1 175329026 175329322 -67335031 + AluSx SINE Alu 1 295 -17 2463 45 3 0 chr1 175330413 175330705 -67333648 + AluY SINE Alu 1 293 -18 816 182 0 7 chr1 175330751 175330894 -67333459 + FLAM_C SINE Alu 1 142 -1 784 159 0 23 chr1 175330898 175331030 -67333323 - FLAM_A SINE Alu -4 129 1 1414 170 0 4 chr1 175331070 175331299 -67333054 - AluJb SINE Alu -2 310 83 2246 111 0 7 chr1 175331387 175331685 -67332668 - AluSx SINE Alu -16 296 1 665 255 24 72 chr1 175332525 175332615 -67331738 - MIR SINE MIR -30 232 139 2489 65 0 40 chr1 175332615 175332936 -67331417 - AluY SINE Alu -3 308 1 665 255 24 72 chr1 175332936 175333053 -67331300 - MIR SINE MIR -123 139 35 236 179 90 30 chr1 175333155 175333222 -67331131 - MIR SINE MIR -102 106 36 2108 109 0 35 chr1 175333704 175334015 -67330338 + AluSg SINE Alu 1 300 -10 468 228 15 127 chr1 175335757 175335954 -67328399 - MER20 DNA MER1_type -1 218 44 945 205 41 5 chr1 175336563 175336758 -67327595 - MLT1F LTR MaLR -236 306 105 1757 104 5 0 chr1 175336963 175337183 -67327170 - AluSq SINE Alu -92 221 1 229 342 0 0 chr1 175337320 175337396 -67326957 + MIR SINE MIR 30 105 -103 452 214 20 0 chr1 175338165 175338263 -67326090 + L2 LINE L2 3153 3252 -20 2247 109 0 0 chr1 175338267 175338560 -67325793 - AluSx SINE Alu -16 296 4 184 277 21 75 chr1 175338962 175339056 -67325297 - MIR SINE MIR -50 212 124 606 149 0 0 chr1 175339508 175339595 -67324758 + AluJ/FLAM SINE Alu 2 88 -224 893 170 0 0 chr1 175339595 175339730 -67324623 + AluJo/FRAM SINE Alu 165 299 -13 2132 116 11 0 chr1 175339889 175340173 -67324180 + AluSq SINE Alu 1 287 -26 1199 180 5 1 chr1 175340314 175340550 -67323803 + L1MB5 LINE L1 5700 5934 -239 489 217 17 33 chr1 175340559 175340679 -67323674 + L2 LINE L2 3155 3272 0 1133 174 23 23 chr1 175340771 175340954 -67323399 + L1MB5 LINE L1 5957 6142 -32 2382 108 3 0 chr1 175340954 175341261 -67323092 + AluSx SINE Alu 1 308 -4 1133 174 23 23 chr1 175341261 175341295 -67323058 + L1MB5 LINE L1 6141 6174 0 2137 120 0 3 chr1 175342481 175342772 -67321581 + AluSx SINE Alu 1 290 -22 25 0 0 0 chr1 175342772 175342797 -67321556 + AT_rich Low_complexity Low_complexity 1 25 0 1949 152 3 14 chr1 175343905 175344202 -67320151 + AluSx SINE Alu 1 294 -18 242 217 0 0 chr1 175344228 175344274 -67320079 + MIR3 SINE MIR 138 183 -25 790 188 0 0 chr1 175345827 175345960 -67318393 + FLAM_C SINE Alu 1 133 0 327 285 278 11 chr1 175346950 175347213 -67317140 + L3 LINE CR1 1158 1490 -87 559 281 99 9 chr1 175347298 175347622 -67316731 - L1MC4 LINE L1 0 8042 7690 327 296 61 23 chr1 175347672 175347804 -67316549 - MER5B DNA MER1_type -34 144 8 201 102 82 20 chr1 175347867 175347916 -67316437 + (ATTAG)n Simple_repeat Simple_repeat 2 53 0 222 216 157 0 chr1 175348588 175348639 -67315714 + L3b LINE CR1 1498 1556 -27 312 277 50 40 chr1 175349219 175349320 -67315033 - L2 LINE L2 -3 3269 3168 2118 102 33 0 chr1 175349531 175349806 -67314547 - AluSg SINE Alu -12 298 15 22 0 0 0 chr1 175350125 175350147 -67314206 + AT_rich Low_complexity Low_complexity 1 22 0 362 137 5 0 chr1 175350314 175350372 -67313981 + Alu SINE Alu 3 52 -250 1617 103 24 0 chr1 175350372 175350585 -67313768 + AluSg/x SINE Alu 95 312 0 949 98 0 8 chr1 175350604 175350726 -67313627 + AluSq/x SINE Alu 13 133 -179 186 103 0 0 chr1 175350728 175350757 -67313596 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 238 275 25 25 chr1 175350803 175350883 -67313470 + MIR SINE MIR 183 262 0 368 297 10 0 chr1 175350910 175351024 -67313329 - MIR SINE MIR -62 146 35 734 209 34 14 chr1 175351301 175351449 -67312904 - MER5A DNA MER1_type 0 189 39 198 225 70 84 chr1 175351492 175351563 -67312790 + MIR SINE MIR 126 195 -67 1704 128 109 32 chr1 175351610 175351922 -67312431 + MER1B DNA MER1_type 1 336 -3 2293 124 0 0 chr1 175352490 175352797 -67311556 - AluSx SINE Alu -5 307 1 569 178 9 19 chr1 175353062 175353169 -67311184 + FLAM_A SINE Alu 16 121 -21 655 145 110 14 chr1 175353182 175353327 -67311026 - MER5A DNA MER1_type -28 161 3 2192 109 7 0 chr1 175353510 175353804 -67310549 + AluSx SINE Alu 1 296 -16 2150 141 0 0 chr1 175353806 175354118 -67310235 + AluSx SINE Alu 1 312 0 2010 147 3 0 chr1 175354200 175354492 -67309861 + AluSx SINE Alu 1 293 -19 241 250 0 0 chr1 175354907 175354959 -67309394 - MER5A DNA MER1_type -1 188 137 436 194 61 10 chr1 175355052 175355150 -67309203 + MER5B DNA MER1_type 21 123 -55 248 308 249 11 chr1 175355200 175355385 -67308968 + MIR SINE MIR 14 242 -20 21 0 0 0 chr1 175355396 175355417 -67308936 + AT_rich Low_complexity Low_complexity 1 21 0 1714 156 18 0 chr1 175355602 175355877 -67308476 + AluJb SINE Alu 1 280 -32 551 230 137 9 chr1 175356527 175356707 -67307646 + L1ME3A LINE L1 5977 6166 0 1606 167 87 9 chr1 175357109 175357432 -67306921 - MER7A DNA MER2_type 0 346 1 737 192 0 0 chr1 175362072 175362197 -67302156 + FLAM_A SINE Alu 1 125 -8 180 315 163 11 chr1 175368316 175368408 -67295945 - MIR3 SINE MIR -10 198 93 423 0 0 0 chr1 175369470 175369517 -67294836 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr1 175371852 175371874 -67292479 + AT_rich Low_complexity Low_complexity 1 22 0 270 344 136 60 chr1 175372039 175372408 -67291945 - L2 LINE L2 -40 3232 2836 513 310 170 45 chr1 175372694 175373281 -67291072 - L2 LINE L2 -826 2488 1763 1950 83 0 26 chr1 175373281 175373546 -67290807 - AluY SINE Alu -20 291 34 513 310 170 45 chr1 175373546 175373800 -67290553 - L2 LINE L2 -1551 1763 1542 428 275 191 0 chr1 175374395 175374526 -67289827 + MER5A DNA MER1_type 31 186 -3 720 253 198 9 chr1 175374573 175374917 -67289436 + L1ME4a LINE L1 5696 6104 -17 1879 102 74 25 chr1 175377579 175377864 -67286489 - AluSx SINE Alu -13 299 1 434 246 55 18 chr1 175380817 175380927 -67283426 + L2 LINE L2 3195 3308 -5 375 289 86 13 chr1 175381603 175381755 -67282598 - L3b LINE CR1 -8 1575 1413 208 322 91 33 chr1 175381781 175381902 -67282451 - L3 LINE CR1 -249 1328 1201 614 195 17 8 chr1 175383780 175383898 -67280455 - MER58B DNA MER1_type -25 316 198 34 0 0 0 chr1 175384194 175384228 -67280125 + AT_rich Low_complexity Low_complexity 1 34 0 2109 95 7 17 chr1 175385989 175386285 -67278068 + AluSx SINE Alu 1 293 -19 180 0 0 0 chr1 175386285 175386305 -67278048 + (TA)n Simple_repeat Simple_repeat 2 21 0 187 276 134 100 chr1 175386899 175387250 -67277103 + L2 LINE L2 1721 2083 -1231 186 189 0 0 chr1 175387523 175387560 -67276793 + GA-rich Low_complexity Low_complexity 1 37 0 1397 154 9 118 chr1 175388022 175388360 -67275993 + AluJo SINE Alu 1 301 -1 213 132 0 0 chr1 175388466 175388504 -67275849 + (TA)n Simple_repeat Simple_repeat 2 39 0 379 253 127 25 chr1 175389006 175389164 -67275189 - MIR3 SINE MIR -1 207 34 967 186 55 14 chr1 175389456 175389676 -67274677 + AluJo SINE Alu 82 310 -2 216 293 35 0 chr1 175389714 175389772 -67274581 + L2 LINE L2 1823 1882 -1432 413 287 54 0 chr1 175389772 175389939 -67274414 - MER104 DNA Tc2 -4 176 1 625 259 330 13 chr1 175389945 175390420 -67273933 + L2 LINE L2 1888 2513 -801 304 255 14 103 chr1 175390486 175390565 -67273788 + L2 LINE L2 2686 2748 -566 1683 154 79 4 chr1 175390565 175390845 -67273508 - AluJb SINE Alu -11 301 1 304 255 14 103 chr1 175390845 175390910 -67273443 + L2 LINE L2 2748 2817 -497 2106 92 0 83 chr1 175391043 175391370 -67272983 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr1 175392133 175392157 -67272196 + AT_rich Low_complexity Low_complexity 1 24 0 302 283 283 0 chr1 175392777 175392964 -67271389 + L1ME4a LINE L1 5882 6121 0 347 340 38 0 chr1 175393012 175393118 -67271235 + L2 LINE L2 3204 3313 0 21 0 0 0 chr1 175393205 175393226 -67271127 + AT_rich Low_complexity Low_complexity 1 21 0 1048 140 4 2 chr1 175393343 175393580 -67270773 - AluJb SINE Alu -19 293 2 1711 173 3 7 chr1 175394298 175394593 -67269760 + AluJb SINE Alu 1 294 -18 2171 117 0 0 chr1 175398647 175398946 -67265407 - AluSx SINE Alu -8 304 6 2294 110 0 0 chr1 175399104 175399404 -67264949 + AluSg SINE Alu 1 300 -10 22 0 0 0 chr1 175399853 175399875 -67264478 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 175399945 175399965 -67264388 + (A)n Simple_repeat Simple_repeat 1 20 0 304 279 210 52 chr1 175400265 175400741 -67263612 + L2 LINE L2 1246 1796 -1518 674 309 126 46 chr1 175400743 175401406 -67262947 + L2 LINE L2 2338 3058 -214 796 131 0 51 chr1 175401621 175401758 -67262595 - FLAM_A SINE Alu -3 130 1 1227 68 0 0 chr1 175401769 175401916 -67262437 - AluY SINE Alu -16 295 149 22 56 0 0 chr1 175401965 175402001 -67262352 + AT_rich Low_complexity Low_complexity 1 36 0 415 123 27 27 chr1 175402015 175402088 -67262265 + MADE1 DNA Mariner 8 80 0 370 264 61 0 chr1 175403218 175403329 -67261024 - MIR SINE MIR -67 141 61 869 165 53 6 chr1 175403595 175403765 -67260588 + MER58A DNA MER1_type 47 224 0 1820 173 10 3 chr1 175404282 175404583 -67259770 + AluJo SINE Alu 1 303 -9 592 225 188 28 chr1 175405122 175405340 -67259013 - MIR SINE MIR -4 258 6 2245 115 7 0 chr1 175405597 175405901 -67258452 + AluSx SINE Alu 1 306 -6 221 393 32 46 chr1 175406652 175406871 -67257482 - L2 LINE L2 -409 2905 2690 231 264 0 99 chr1 175407054 175407145 -67257208 + L2 LINE L2 3232 3313 0 304 359 135 16 chr1 175407150 175407529 -67256824 - L2 LINE L2 -1015 2299 1876 28 0 0 0 chr1 175407738 175407766 -67256587 + AT_rich Low_complexity Low_complexity 1 28 0 2144 103 7 0 chr1 175408135 175408453 -67255900 + AluSq SINE Alu 1 320 0 210 271 17 17 chr1 175408731 175408790 -67255563 + L2 LINE L2 3247 3305 -8 315 333 128 0 chr1 175408857 175408998 -67255355 + MIR SINE MIR 34 192 -70 939 224 40 9 chr1 175409522 175409745 -67254608 - MIR SINE MIR -18 244 15 258 365 52 0 chr1 175411021 175411117 -67253236 - L2 LINE L2 -36 3236 3136 180 263 0 0 chr1 175411136 175411174 -67253179 + MIR SINE MIR 13 50 -212 1085 202 74 4 chr1 175411365 175411608 -67252745 + MIR SINE MIR 3 262 0 312 261 0 0 chr1 175411629 175411698 -67252655 - MIR SINE MIR -75 187 119 394 207 0 0 chr1 175412818 175412900 -67251453 - MER20B DNA MER1_type -196 587 506 1499 143 48 0 chr1 175413099 175413416 -67250937 + L1MC1 LINE L1 5202 5540 -745 2015 125 18 15 chr1 175413517 175413854 -67250499 + L1MC1 LINE L1 5984 6321 -12 1574 178 87 0 chr1 175413925 175414201 -67250152 - AluJb SINE Alu -12 300 1 2167 100 0 7 chr1 175414580 175414890 -67249463 + AluSg SINE Alu 1 308 -2 1061 237 94 40 chr1 175415358 175415504 -67248849 - L2 LINE L2 -1041 2273 2136 1464 126 36 5 chr1 175415504 175415726 -67248627 - MER30 DNA MER1_type -1 229 1 1061 237 94 40 chr1 175415726 175415951 -67248402 - L2 LINE L2 -1178 2136 1882 475 296 71 9 chr1 175416297 175416469 -67247884 - MIR SINE MIR -36 172 14 2075 125 7 0 chr1 175416566 175416861 -67247492 - AluSg SINE Alu -13 297 1 255 228 64 11 chr1 175417157 175417283 -67247070 + L1ME2 LINE L1 1337 1449 -4831 2110 95 4 0 chr1 175417323 175417597 -67246756 + AluSg SINE Alu 1 275 -35 671 75 0 0 chr1 175417599 175417692 -67246661 + AluSg/x SINE Alu 215 307 -3 989 295 8 24 chr1 175417704 175418077 -67246276 + L1ME2 LINE L1 1679 2045 -4518 27 29 0 0 chr1 175418194 175418228 -67246125 + AT_rich Low_complexity Low_complexity 1 34 0 1123 173 0 5 chr1 175418280 175418471 -67245882 + AluJb SINE Alu 120 309 -3 1498 206 81 72 chr1 175418481 175418570 -67245783 + L1ME2 LINE L1 2741 2828 -3554 2086 132 7 0 chr1 175418570 175418874 -67245479 + AluSx SINE Alu 1 306 -6 1498 206 81 72 chr1 175418874 175419176 -67245177 + L1ME2 LINE L1 2828 3126 -3256 1720 197 3 19 chr1 175419176 175419486 -67244867 + AluJo SINE Alu 2 306 -6 1498 206 81 72 chr1 175419486 175419811 -67244542 + L1ME2 LINE L1 3126 3464 -2918 1444 198 90 92 chr1 175419807 175420328 -67244025 + L1ME2 LINE L1 4793 5314 -1068 * 1382 189 12 118 chr1 175420328 175420736 -67243617 + MLT1A1 LTR MaLR 1 365 0 1444 198 90 92 chr1 175420736 175420880 -67243473 + L1ME2 LINE L1 5314 5457 -925 269 309 21 0 chr1 175420880 175420977 -67243376 + (TA)n Simple_repeat Simple_repeat 2 100 0 1075 218 55 96 chr1 175420998 175421382 -67242971 + L1ME2 LINE L1 5886 6245 -155 1881 124 67 0 chr1 175421382 175421649 -67242704 + AluSx SINE Alu 1 285 -27 1075 218 55 96 chr1 175421649 175421774 -67242579 + L1ME2 LINE L1 6245 6374 -26 812 199 0 0 chr1 175422411 175422547 -67241806 - MER5A DNA MER1_type -53 136 1 2282 100 13 0 chr1 175423466 175423767 -67240586 + AluSx SINE Alu 1 305 -7 612 190 183 0 chr1 175423837 175423974 -67240379 + MER3 DNA MER1_type 48 209 0 297 146 0 0 chr1 175423931 175423979 -67240374 - MER3 DNA MER1_type -119 90 43 * 452 161 69 0 chr1 175424075 175424162 -67240191 + MER3 DNA MER1_type 117 209 0 542 266 209 34 chr1 175424562 175424923 -67239430 + LTR67 LTR ERVL 29 482 -75 1991 182 104 13 chr1 175424923 175425385 -67238968 + MLT1D LTR MaLR 1 504 -1 542 266 209 34 chr1 175425385 175425463 -67238890 + LTR67 LTR ERVL 482 545 -12 1194 137 43 28 chr1 175425530 175425741 -67238612 + AluJb SINE Alu 83 296 -16 2131 113 0 0 chr1 175425741 175426033 -67238320 + AluSg SINE Alu 1 292 -18 28 86 0 0 chr1 175427128 175427198 -67237155 + AT_rich Low_complexity Low_complexity 1 70 0 344 277 261 16 chr1 175427244 175427428 -67236925 + MIR SINE MIR 34 262 0 22 0 0 0 chr1 175427647 175427669 -67236684 + AT_rich Low_complexity Low_complexity 1 22 0 924 209 152 10 chr1 175428018 175428314 -67236039 - MER2 DNA MER2_type -1 344 7 201 300 200 0 chr1 175428365 175428445 -67235908 - MIR SINE MIR -120 142 47 1328 148 104 38 chr1 175429621 175429939 -67234414 - MER44D DNA MER2_type 0 609 1 268 265 124 124 chr1 175430365 175430474 -67233879 + L2 LINE L2 2896 3004 -268 590 155 0 128 chr1 175430474 175430622 -67233731 + FLAM_C SINE Alu 5 133 0 268 265 124 124 chr1 175430622 175430874 -67233479 + L2 LINE L2 3003 3257 -15 281 283 186 11 chr1 175431461 175431599 -67232754 - MIR SINE MIR -19 189 46 189 342 43 8 chr1 175432536 175432653 -67231700 + L2 LINE L2 2945 3065 -248 1216 173 28 5 chr1 175432988 175433202 -67231151 + MER20 DNA MER1_type 1 219 0 533 262 13 4 chr1 175434588 175434821 -67229532 + (CATA)n Simple_repeat Simple_repeat 1 235 0 549 283 0 0 chr1 175434835 175435015 -67229338 + (TA)n Simple_repeat Simple_repeat 1 180 0 266 111 0 0 chr1 175435015 175435051 -67229302 + (CA)n Simple_repeat Simple_repeat 1 36 0 415 273 215 39 chr1 175437035 175437295 -67227058 + L2 LINE L2 3008 3313 0 432 277 77 15 chr1 175437323 175437453 -67226900 + MIR3 SINE MIR 31 168 -40 199 323 115 0 chr1 175437647 175437743 -67226610 + L2 LINE L2 3187 3293 -20 2297 69 0 3 chr1 175437852 175438168 -67226185 - AluSq SINE Alu 0 313 2 332 303 89 87 chr1 175439444 175439880 -67224473 + L1M2 LINE L1 527 963 -5886 258 224 0 40 chr1 175440056 175440132 -67224221 + G-rich Low_complexity Low_complexity 6 78 0 183 80 0 0 chr1 175441852 175441877 -67222476 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 22 35 0 0 chr1 175442327 175442356 -67221997 + AT_rich Low_complexity Low_complexity 1 29 0 391 342 33 0 chr1 175442609 175442729 -67221624 - L2 LINE L2 -4 3309 3186 2230 131 3 0 chr1 175443419 175443725 -67220628 - AluSx SINE Alu -5 307 1 598 222 0 44 chr1 175443813 175443948 -67220405 - FLAM_A SINE Alu -4 129 1 1751 134 55 68 chr1 175445345 175445725 -67218628 + THE1C LTR MaLR 1 375 0 2027 134 16 3 chr1 175445989 175446296 -67218057 - AluJo SINE Alu -1 311 1 707 183 8 0 chr1 175446321 175446441 -67217912 + FLAM_A SINE Alu 1 121 -12 558 322 78 65 chr1 175446559 175447111 -67217242 + L2 LINE L2 2726 3272 0 935 115 8 0 chr1 175447146 175447276 -67217077 + FLAM_C SINE Alu 2 132 -1 21 57 0 0 chr1 175447508 175447543 -67216810 + AT_rich Low_complexity Low_complexity 1 35 0 197 258 129 0 chr1 175447887 175447949 -67216404 + MIR SINE MIR 183 252 -10 229 132 19 19 chr1 175448095 175448148 -67216205 + CT-rich Low_complexity Low_complexity 3 55 0 380 90 0 30 chr1 175448149 175448216 -67216137 + (TCCCC)n Simple_repeat Simple_repeat 4 68 0 198 118 0 0 chr1 175448216 175448250 -67216103 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 1576 160 41 31 chr1 175448274 175448567 -67215786 - AluJb SINE Alu -16 296 1 1833 171 0 0 chr1 175448864 175449178 -67215175 - AluJb SINE Alu 0 318 5 218 348 139 0 chr1 175449623 175449738 -67214615 - L2 LINE L2 -38 3234 3104 1167 126 12 0 chr1 175450266 175450433 -67213920 + AluSg/x SINE Alu 137 305 -7 216 273 18 36 chr1 175450896 175451006 -67213347 + GA-rich Low_complexity Low_complexity 3 110 0 1345 163 4 37 chr1 175451313 175451558 -67212795 + AluJo SINE Alu 59 295 -17 280 100 0 0 chr1 175451614 175451654 -67212699 - U2 snRNA snRNA -148 40 1 222 37 0 0 chr1 175451722 175451749 -67212604 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2039 150 3 7 chr1 175451868 175452175 -67212178 - AluSx SINE Alu -2 310 5 2046 146 3 16 chr1 175452298 175452613 -67211740 - AluJb SINE Alu -1 311 1 386 274 203 15 chr1 175452704 175452970 -67211383 - L2 LINE L2 -798 2516 2201 1903 138 17 14 chr1 175453088 175453221 -67211132 + AluJo SINE Alu 1 132 -180 2178 91 0 14 chr1 175453221 175453508 -67210845 + AluSx SINE Alu 1 283 -29 1177 144 97 5 chr1 175453475 175453508 -67210845 + AluJo SINE Alu 85 114 -198 198 0 0 0 chr1 175453508 175453530 -67210823 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1903 138 17 14 chr1 175453530 175453691 -67210662 + AluJo SINE Alu 131 297 -15 1177 144 97 5 chr1 175453530 175453691 -67210662 + AluJo SINE Alu 114 297 -15 28 0 0 0 chr1 175454235 175454263 -67210090 + AT_rich Low_complexity Low_complexity 1 28 0 2293 102 3 0 chr1 175454319 175454622 -67209731 + AluSx SINE Alu 1 304 -8 586 244 16 0 chr1 175455185 175455308 -67209045 + FLAM_A SINE Alu 2 126 -7 326 276 65 20 chr1 175455421 175455667 -67208686 - L1MEc LINE L1 -3734 2481 2225 1839 144 0 4 chr1 175455728 175456006 -67208347 - AluSx SINE Alu -12 300 24 2218 63 0 28 chr1 175456232 175456547 -67207806 - AluY SINE Alu 0 308 2 449 322 53 37 chr1 175456731 175456995 -67207358 - L1MEc LINE L1 -742 1834 1507 2394 75 0 0 chr1 175456995 175457287 -67207066 - AluSg SINE Alu -18 292 1 449 322 53 37 chr1 175457287 175457405 -67206948 - L1MEc LINE L1 -1069 1507 1392 2084 228 78 29 chr1 175457529 175458091 -67206262 - MLT1G LTR MaLR 0 590 1 1433 149 5 14 chr1 175458181 175458403 -67205950 - AluJo SINE Alu -92 220 1 1586 286 125 47 chr1 175458616 175459008 -67205345 + L1MC4a LINE L1 2653 3013 -3133 2329 108 0 6 chr1 175459008 175459322 -67205031 + AluSx SINE Alu 1 312 0 1586 286 125 47 chr1 175459322 175460831 -67203522 + L1MC4a LINE L1 3013 4703 -1443 815 118 28 56 chr1 175461054 175461097 -67203256 - Charlie1 DNA MER1_type 0 2761 2718 2214 97 7 0 chr1 175461097 175461385 -67202968 - AluSp SINE Alu -23 290 1 815 118 28 56 chr1 175461385 175461485 -67202868 - Charlie1 DNA MER1_type -43 2718 2622 * 1242 196 18 5 chr1 175461481 175461705 -67202648 - Charlie1 DNA MER1_type -2534 227 1 673 275 42 15 chr1 175461709 175462044 -67202309 + L1MC4a LINE L1 4981 5324 -822 385 268 151 15 chr1 175462053 175462273 -67202080 + L1M1 LINE L1 5383 5584 -721 1074 277 158 24 chr1 175462326 175462810 -67201543 - L2 LINE L2 0 3313 2895 2180 145 33 22 chr1 175462810 175463169 -67201184 - THE1B LTR MaLR -1 363 1 1074 277 158 24 chr1 175463169 175463491 -67200862 - L2 LINE L2 -418 2895 2368 188 372 13 32 chr1 175464543 175464699 -67199654 - L2 LINE L2 -2413 901 749 2271 74 0 3 chr1 175464975 175465259 -67199094 - AluY SINE Alu -28 283 1 297 0 0 0 chr1 175465389 175465422 -67198931 + (CA)n Simple_repeat Simple_repeat 2 34 0 787 268 144 31 chr1 175465427 175465946 -67198407 + L1MC4a LINE L1 5446 6023 -1785 310 267 107 7 chr1 175466936 175467086 -67197267 + MER103 DNA DNA 2 166 0 224 197 53 13 chr1 175468323 175468399 -67195954 + (TATAA)n Simple_repeat Simple_repeat 5 83 0 207 0 0 0 chr1 175469608 175469631 -67194722 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 399 169 0 48 chr1 175470054 175470137 -67194216 + MLT1A1 LTR MaLR 1 79 -286 21 36 0 0 chr1 175470251 175470279 -67194074 + AT_rich Low_complexity Low_complexity 1 28 0 512 190 49 79 chr1 175470477 175470667 -67193686 + LTR45B LTR ERV1 305 525 0 1524 164 82 4 chr1 175470667 175470935 -67193418 + MLT1A1 LTR MaLR 77 365 0 2516 186 81 6 chr1 175471099 175471631 -67192722 - L1MD3 LINE L1 0 7995 7424 235 247 55 0 chr1 175471631 175471704 -67192649 - MLT1F1 LTR MaLR -420 147 71 347 233 0 0 chr1 175471772 175471845 -67192508 - MLT1F1 LTR MaLR -494 73 1 1109 171 196 21 chr1 175471845 175472052 -67192301 - L1MD3 LINE L1 -717 7278 7108 189 107 0 0 chr1 175472052 175472080 -67192273 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1109 171 196 21 chr1 175472080 175472120 -67192233 - L1MD3 LINE L1 -887 7108 7076 192 111 0 0 chr1 175472120 175472156 -67192197 + (TA)n Simple_repeat Simple_repeat 1 36 0 1109 171 196 21 chr1 175472156 175472234 -67192119 - L1MD3 LINE L1 -919 7076 6895 670 282 72 29 chr1 175472234 175472511 -67191842 + MER68 LTR ERV1 1 289 -273 405 0 0 0 chr1 175472511 175472556 -67191797 + (CA)n Simple_repeat Simple_repeat 2 46 0 4423 213 57 44 chr1 175472557 175474164 -67190189 - L1MD3 LINE L1 -749 5397 4964 514 162 28 28 chr1 175474183 175474325 -67190028 + CT-rich Low_complexity Low_complexity 3 144 0 501 217 7 66 chr1 175474328 175474414 -67189939 - L1MD3 LINE L1 -1213 4933 4858 2292 75 0 30 chr1 175474414 175474719 -67189634 + AluY SINE Alu 1 296 -15 501 217 7 66 chr1 175474719 175474784 -67189569 - L1MD3 LINE L1 -1288 4858 4791 352 158 74 32 chr1 175474801 175474896 -67189457 - L1MCb LINE L1 -4962 1083 985 21 36 0 0 chr1 175475306 175475334 -67189019 + AT_rich Low_complexity Low_complexity 1 28 0 638 186 32 8 chr1 175475859 175475983 -67188370 + AluJo SINE Alu 1 127 -175 1645 68 8 30 chr1 175475995 175476229 -67188124 - L1PA14 LINE L1 -6 6155 5927 884 189 7 0 chr1 175476250 175476403 -67187950 + AluJo SINE Alu 135 288 -24 469 254 163 75 chr1 175476435 175476818 -67187535 - MLT1L LTR MaLR 0 511 63 254 28 0 28 chr1 175477775 175477811 -67186542 + (CA)n Simple_repeat Simple_repeat 1 35 0 3081 163 10 15 chr1 175528586 175529194 -67135159 - L1 LINE L1 -1119 5027 4423 2069 143 0 0 chr1 175529200 175529494 -67134859 - AluSx SINE Alu -17 295 2 409 286 0 0 chr1 175529495 175529635 -67134718 - L1 LINE L1 -1995 4151 4012 455 333 18 23 chr1 175530084 175530255 -67134098 - MIR SINE MIR -12 250 81 298 238 114 0 chr1 175530576 175530681 -67133672 + MIR3 SINE MIR 82 198 -10 537 161 0 0 chr1 175531170 175531300 -67133053 + (TG)n Simple_repeat Simple_repeat 1 130 0 335 272 26 35 chr1 175531747 175531861 -67132492 + MIR3 SINE MIR 81 193 -15 655 261 53 57 chr1 175531927 175532172 -67132181 + MIR SINE MIR 19 262 0 320 344 49 41 chr1 175532230 175532474 -67131879 - MLT1I LTR MaLR -66 343 98 399 221 90 16 chr1 175534009 175534131 -67130222 + MIR SINE MIR 23 153 -109 2029 129 28 3 chr1 175534187 175534474 -67129879 + AluSq SINE Alu 1 294 -19 2243 123 0 0 chr1 175534485 175534777 -67129576 - AluSx SINE Alu -20 292 1 2114 151 83 2 chr1 175535523 175535920 -67128433 - MSTB1 LTR MaLR 0 432 4 392 301 77 32 chr1 175536127 175536283 -67128070 - MIR3 SINE MIR -4 204 42 2049 160 102 19 chr1 175536286 175536698 -67127655 - MER83 LTR ERV1 0 448 3 225 315 0 0 chr1 175536935 175536989 -67127364 + (CA)n Simple_repeat Simple_repeat 1 54 0 506 324 67 17 chr1 175537008 175537246 -67127107 + MIR SINE MIR 3 252 -10 20796 51 48 2 chr1 175538129 175540884 -67123469 - L1P LINE L1 -3266 2880 1 303 28 0 0 chr1 175540949 175540985 -67123368 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 521 287 40 55 chr1 175541007 175541279 -67123074 - L2 LINE L2 -383 2931 2664 433 289 16 0 chr1 175541382 175541503 -67122850 + MER20 DNA MER1_type 96 218 -1 398 286 8 15 chr1 175543978 175544111 -67120242 - MIR3 SINE MIR -65 143 12 185 206 0 0 chr1 175544286 175544320 -67120033 - MIR SINE MIR -113 149 116 2492 74 0 3 chr1 175545113 175545409 -67118944 - AluY SINE Alu -16 295 1 191 283 9 88 chr1 175545615 175545728 -67118625 + L2 LINE L2 2932 3035 -237 325 316 72 22 chr1 175546432 175546571 -67117782 - L1MDa LINE L1 -4408 2132 1987 211 290 20 20 chr1 175546572 175546672 -67117681 + CT-rich Low_complexity Low_complexity 4 103 0 442 283 25 6 chr1 175547061 175547220 -67117133 - L1ME LINE L1 -394 5727 5566 208 295 32 32 chr1 175547445 175547540 -67116813 + L2 LINE L2 2850 2944 -328 1041 221 36 0 chr1 175547675 175547928 -67116425 + L1ME3A LINE L1 5688 5949 -221 317 299 92 49 chr1 175548003 175548187 -67116166 + L1ME3A LINE L1 5971 6162 -8 360 304 101 7 chr1 175548889 175549037 -67115316 + MIR SINE MIR 100 261 -1 221 154 0 26 chr1 175549193 175549232 -67115121 + GA-rich Low_complexity Low_complexity 2 39 0 495 289 119 50 chr1 175549826 175550185 -67114168 + MLT1H LTR MaLR 40 533 -16 504 291 77 61 chr1 175550280 175550593 -67113760 - L2 LINE L2 0 3272 2955 434 289 36 28 chr1 175551003 175551252 -67113101 + L2 LINE L2 2834 3084 -188 433 313 65 18 chr1 175552464 175552681 -67111672 + MIR SINE MIR 2 228 -34 216 97 0 0 chr1 175552780 175552811 -67111542 + (A)n Simple_repeat Simple_repeat 1 31 0 1227 162 0 47 chr1 175552832 175553067 -67111286 + AluJo SINE Alu 35 258 -54 476 282 116 33 chr1 175554396 175554637 -67109716 + L2 LINE L2 3011 3271 -1 30 27 0 0 chr1 175555114 175555151 -67109202 + AT_rich Low_complexity Low_complexity 1 37 0 334 198 128 0 chr1 175555328 175555414 -67108939 - MIR SINE MIR -96 166 70 248 152 23 0 chr1 175555698 175555748 -67108605 - MLT1J2 LTR MaLR -308 142 92 342 293 43 27 chr1 175556244 175556432 -67107921 + MIR SINE MIR 28 218 -44 182 284 69 26 chr1 175556492 175556608 -67107745 + MIR SINE MIR 20 140 -68 2390 106 0 0 chr1 175557631 175557943 -67106410 - AluSx SINE Alu 0 312 1 232 195 16 63 chr1 175558818 175558920 -67105433 + MIR SINE MIR 4 96 -112 190 343 20 10 chr1 175559054 175559153 -67105200 - MIR SINE MIR -118 144 45 284 171 171 0 chr1 175559730 175559806 -67104547 - MIR SINE MIR -126 136 48 288 299 0 0 chr1 175560016 175560093 -67104260 + MIR SINE MIR 8 84 -178 1675 195 48 11 chr1 175560280 175560655 -67103698 + MLT1B LTR MaLR 1 389 -1 501 301 86 16 chr1 175561661 175562172 -67102181 + L1MEc LINE L1 1448 1939 -4913 241 181 11 96 chr1 175562157 175562291 -67102062 + L1MEc LINE L1 2859 2961 -3902 * 2125 131 3 3 chr1 175562330 175562636 -67101717 - AluSx SINE Alu -6 306 1 2316 128 8 22 chr1 175562756 175563114 -67101239 + L1PA16 LINE L1 5646 5998 -168 384 221 90 16 chr1 175563474 175563596 -67100757 + MIR SINE MIR 23 153 -109 2001 129 28 3 chr1 175563652 175563939 -67100414 + AluSq SINE Alu 1 294 -19 2081 141 3 0 chr1 175563950 175564241 -67100112 - AluSx SINE Alu -20 292 1 2200 117 7 3 chr1 175565493 175565793 -67098560 - AluSp SINE Alu -12 301 1 198 200 188 59 chr1 175566149 175566234 -67098119 + MIR SINE MIR 47 142 -120 256 210 12 49 chr1 175566688 175566769 -67097584 - LTR33A LTR ERVL 0 523 446 233 174 0 65 chr1 175567060 175567106 -67097247 - MLT1J LTR MaLR -376 135 93 1848 168 0 26 chr1 175567321 175567630 -67096723 - AluSx SINE Alu -11 301 1 467 245 19 0 chr1 175567722 175567828 -67096525 - L2 LINE L2 -3 3310 3203 601 304 65 0 chr1 175567863 175568064 -67096289 + MIR SINE MIR 42 255 -7 534 318 123 25 chr1 175568285 175568495 -67095858 - L2 LINE L2 -391 2923 2735 2117 159 88 3 chr1 175568495 175568860 -67095493 - MSTD LTR MaLR 0 396 1 534 318 123 25 chr1 175568860 175569014 -67095339 - L2 LINE L2 -579 2735 2523 4901 222 27 30 chr1 175569067 175570058 -67094295 - SVA Other Other 0 1386 433 1262 300 30 36 chr1 175571233 175571699 -67092654 + MLT1K LTR MaLR 126 588 0 2166 133 0 0 chr1 175571723 175572031 -67092322 + AluSx SINE Alu 1 308 -4 723 179 0 8 chr1 175572777 175572900 -67091453 + FLAM_C SINE Alu 5 126 -7 339 25 0 0 chr1 175573806 175573846 -67090507 + (TTTTA)n Simple_repeat Simple_repeat 5 44 0 1957 131 7 0 chr1 175573853 175574127 -67090226 - AluSx SINE Alu -36 276 1 375 200 56 33 chr1 175574447 175574537 -67089816 - MLT1K LTR MaLR -41 547 456 * 1580 139 111 21 chr1 175574529 175574735 -67089618 - MLT1A1 LTR MaLR -51 314 73 2245 145 82 15 chr1 175574735 175575136 -67089217 - MSTA LTR MaLR 0 428 1 1580 139 111 21 chr1 175575136 175575217 -67089136 - MLT1A1 LTR MaLR -292 73 1 255 221 177 18 chr1 175575285 175575398 -67088955 - MIR SINE MIR -5 257 127 620 286 49 4 chr1 175575433 175575678 -67088675 + MIR SINE MIR 7 262 0 478 254 15 8 chr1 175575684 175575818 -67088535 + L2 LINE L2 2119 2253 -1061 920 307 99 9 chr1 175575822 175576382 -67087971 + L2 LINE L2 2694 3302 -11 1901 175 3 3 chr1 175576759 175577068 -67087285 + AluJo SINE Alu 1 309 -3 655 284 207 36 chr1 175577193 175577864 -67086489 + L2 LINE L2 2524 3306 -7 2357 81 7 16 chr1 175577910 175578218 -67086135 - AluSg SINE Alu -4 306 2 209 269 0 0 chr1 175579876 175579928 -67084425 + (TG)n Simple_repeat Simple_repeat 2 53 0 243 237 51 68 chr1 175581124 175581242 -67083111 + L3b LINE CR1 1277 1392 -191 22 0 0 0 chr1 175581497 175581519 -67082834 + AT_rich Low_complexity Low_complexity 1 22 0 261 248 138 24 chr1 175581544 175581704 -67082649 - MIR SINE MIR -53 209 36 1535 188 3 24 chr1 175581985 175582278 -67082075 + AluJb SINE Alu 1 287 -25 21 0 0 0 chr1 175582315 175582336 -67082017 + AT_rich Low_complexity Low_complexity 1 21 0 502 187 0 19 chr1 175582975 175583082 -67081271 - FRAM SINE Alu -1 175 71 2712 35 0 3 chr1 175583361 175583671 -67080682 + AluY SINE Alu 1 309 -2 388 155 0 0 chr1 175583904 175583962 -67080391 + FRAM/FAM SINE Alu 18 75 -100 1156 249 78 73 chr1 175584488 175584748 -67079605 + L2 LINE L2 2428 2685 -628 2382 89 0 0 chr1 175584748 175585051 -67079302 + AluY SINE Alu 1 303 -8 1156 249 78 73 chr1 175585051 175585667 -67078686 + L2 LINE L2 2685 3303 -10 1822 139 46 7 chr1 175585667 175585947 -67078406 + AluSx SINE Alu 1 291 -21 1435 150 9 9 chr1 175586253 175586473 -67077880 + AluJo SINE Alu 1 220 -92 265 173 0 0 chr1 175586473 175586525 -67077828 + FAM SINE Alu 127 178 -1 1995 116 0 69 chr1 175586889 175587249 -67077104 - AluSx SINE Alu 0 312 1 2045 149 0 0 chr1 175587659 175587960 -67076393 + AluJo SINE Alu 1 301 -11 21 0 0 0 chr1 175588049 175588070 -67076283 + AT_rich Low_complexity Low_complexity 1 21 0 806 147 0 16 chr1 175588070 175588199 -67076154 - FLAM_C SINE Alu -2 131 5 181 271 57 14 chr1 175588666 175588736 -67075617 + MIR SINE MIR 72 144 -118 1644 200 21 3 chr1 175588751 175589086 -67075267 + MER58B DNA MER1_type 1 341 0 212 216 40 68 chr1 175589688 175589762 -67074591 + L2 LINE L2 3201 3272 0 2464 96 0 0 chr1 175590158 175590459 -67073894 + AluSg SINE Alu 1 301 -9 691 314 66 24 chr1 175590624 175591076 -67073277 - L3 LINE CR1 -5 1572 1102 617 206 21 53 chr1 175591831 175592020 -67072333 - L1MC5 LINE L1 -35 7926 7744 1981 151 3 0 chr1 175592034 175592333 -67072020 - AluJb SINE Alu -12 300 1 2133 110 35 0 chr1 175592882 175593172 -67071181 + AluSx SINE Alu 1 300 -12 1996 104 0 0 chr1 175594037 175594288 -67070065 + AluSq SINE Alu 1 251 -62 3664 98 19 8 chr1 175594658 175595189 -67069164 - LTR24B LTR ERV1 0 576 40 1530 73 5 27 chr1 175595189 175595408 -67068945 - L1PA5 LINE L1 -3 6151 5938 1262 300 30 36 chr1 175595569 175596035 -67068318 + MLT1K LTR MaLR 126 588 0 1856 128 0 0 chr1 175596059 175596310 -67068043 + AluSq SINE Alu 1 251 -62 3664 98 19 8 chr1 175596680 175597211 -67067142 - LTR24B LTR ERV1 0 576 40 32356 49 1 1 chr1 175597211 175601989 -67062364 - L1PA5 LINE L1 -3 6151 1376 1222 161 0 0 chr1 175602007 175602187 -67062166 - MER41E LTR ERV1 0 512 333 4606 125 27 4 chr1 175602375 175603070 -67061283 - MER50 LTR ERV1 -23 711 1 185 267 0 0 chr1 175603549 175603594 -67060759 + MIR SINE MIR 153 197 -65 300 348 92 0 chr1 175604822 175604986 -67059367 - L3 LINE CR1 -94 1483 1305 425 278 40 50 chr1 175605230 175605428 -67058925 + L2 LINE L2 3117 3312 -1 2222 109 0 0 chr1 175605435 175605729 -67058624 + AluSx SINE Alu 1 294 -18 346 282 37 43 chr1 175605852 175606015 -67058338 + MIR SINE MIR 28 189 -73 4534 253 61 27 chr1 175606271 175608126 -67056227 - L2 LINE L2 -73 3240 1329 213 39 0 0 chr1 175609244 175609270 -67055083 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1029 142 0 0 chr1 175609270 175609418 -67054935 - AluJb SINE Alu -32 280 133 450 286 39 13 chr1 175609453 175609607 -67054746 - MIR SINE MIR -56 206 49 448 269 30 15 chr1 175610150 175610284 -67054069 - L2 LINE L2 -16 3297 3162 605 242 67 16 chr1 175610833 175611027 -67053326 + MIR SINE MIR 59 262 0 31 68 0 0 chr1 175611873 175611932 -67052421 + AT_rich Low_complexity Low_complexity 1 59 0 1184 191 56 89 chr1 175613786 175614090 -67050263 - AluJo SINE Alu -4 298 5 2004 142 139 34 chr1 175614331 175614504 -67049849 + MSTA LTR MaLR 1 154 -274 2204 123 3 0 chr1 175614504 175614805 -67049548 + AluSx SINE Alu 1 302 -10 2004 142 139 34 chr1 175614805 175615018 -67049335 + MSTA LTR MaLR 154 428 0 8989 172 36 9 chr1 175615018 175616626 -67047727 + MSTA-int LTR MaLR 1 1651 0 2093 145 132 5 chr1 175616628 175617007 -67047346 + MSTA LTR MaLR 2 428 0 759 263 36 4 chr1 175617025 175617272 -67047081 + MIR SINE MIR 8 262 0 1988 164 0 3 chr1 175617279 175617591 -67046762 - AluSx SINE Alu -1 311 1 329 304 60 0 chr1 175617943 175618111 -67046242 + L2 LINE L2 2581 2758 -556 357 229 8 0 chr1 175618538 175618636 -67045717 + L1ME1 LINE L1 6070 6183 -1 1103 201 14 50 chr1 175619283 175619524 -67044829 - L1MCc LINE L1 -3668 2896 2665 1809 181 0 0 chr1 175619524 175619817 -67044536 + AluJo SINE Alu 1 293 -19 1103 201 14 50 chr1 175619817 175619854 -67044499 - L1MCc LINE L1 -3899 2665 2628 248 220 33 0 chr1 175619882 175619973 -67044380 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 1980 132 14 14 chr1 175619973 175620261 -67044092 - AluSx SINE Alu -24 288 1 553 247 67 0 chr1 175620261 175620439 -67043914 - L1MCc LINE L1 -3957 2607 2418 26 0 0 0 chr1 175620439 175620465 -67043888 + AT_rich Low_complexity Low_complexity 1 26 0 1145 111 12 29 chr1 175620465 175620617 -67043736 - AluSq SINE Alu -26 287 137 2013 140 7 7 chr1 175620617 175620910 -67043443 - AluSx SINE Alu -17 295 3 1145 111 12 29 chr1 175620910 175620928 -67043425 - AluSq SINE Alu -176 137 120 1553 242 63 56 chr1 175620948 175621817 -67042536 - L1MCc LINE L1 -4887 1159 437 279 302 10 21 chr1 175622002 175622098 -67042255 - L1MCc LINE L1 -5634 411 317 22 0 0 0 chr1 175622365 175622387 -67041966 + AT_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr1 175622796 175622862 -67041491 + AT_rich Low_complexity Low_complexity 1 66 0 229 286 71 75 chr1 175623438 175623704 -67040649 - L2 LINE L2 -201 3071 2807 * 269 222 32 0 chr1 175623688 175623751 -67040602 + L2 LINE L2 3249 3313 0 343 308 73 56 chr1 175624829 175625063 -67039290 + MIR SINE MIR 9 246 -16 2406 102 0 0 chr1 175625107 175625412 -67038941 + AluSx SINE Alu 1 305 -7 1972 155 3 7 chr1 175626944 175627254 -67037099 + AluJb SINE Alu 1 309 -3 2397 176 29 4 chr1 175627378 175627833 -67036520 - L1MC1 LINE L1 0 6333 5868 209 348 113 32 chr1 175628521 175628742 -67035611 - MIR SINE MIR -11 251 13 492 18 0 0 chr1 175628748 175628805 -67035548 + (TG)n Simple_repeat Simple_repeat 2 58 0 503 242 16 0 chr1 175629025 175629149 -67035204 + MIR SINE MIR 27 152 -110 1235 162 4 81 chr1 175629168 175629440 -67034913 + L1MB3 LINE L1 5933 6183 0 2295 104 7 7 chr1 175629446 175629755 -67034598 + AluSc SINE Alu 1 309 0 278 307 9 0 chr1 175629762 175629876 -67034477 + MIR SINE MIR 137 251 -11 785 215 58 77 chr1 175630795 175631120 -67033233 - MER5C DNA MER1_type -1 323 5 361 215 22 52 chr1 175631149 175631376 -67032977 + Charlie7 DNA MER1_type 38 2608 -4 2188 103 3 0 chr1 175631525 175631843 -67032510 - AluSp SINE Alu 0 319 1 661 239 68 0 chr1 175632601 175632777 -67031576 - MIR SINE MIR -1 261 74 2024 95 73 4 chr1 175633271 175633545 -67030808 - AluSq SINE Alu -20 293 1 295 280 10 30 chr1 175633911 175634011 -67030342 - MIR3 SINE MIR -8 200 103 1695 107 0 4 chr1 175634088 175634313 -67030040 + AluSg SINE Alu 60 283 -27 546 16 0 0 chr1 175634329 175634392 -67029961 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 25 51 0 0 chr1 175634432 175634471 -67029882 + AT_rich Low_complexity Low_complexity 1 39 0 402 336 47 7 chr1 175634770 175634919 -67029434 + L2 LINE L2 3116 3270 -2 202 383 23 16 chr1 175634976 175635104 -67029249 - L2 LINE L2 -226 3046 2918 348 24 0 0 chr1 175635441 175635482 -67028871 + (TG)n Simple_repeat Simple_repeat 2 42 0 397 298 111 49 chr1 175635643 175635868 -67028485 - MIR SINE MIR -16 246 8 4872 142 14 48 chr1 175635899 175636806 -67027547 + L1MB7 LINE L1 5301 6176 -8 2082 126 3 3 chr1 175636809 175637111 -67027242 + AluSq SINE Alu 1 302 -11 575 256 79 47 chr1 175637490 175637705 -67026648 - MIR SINE MIR -10 252 31 278 284 7 14 chr1 175637815 175637949 -67026404 + MIR SINE MIR 23 245 -17 29 28 0 0 chr1 175638138 175638174 -67026179 + AT_rich Low_complexity Low_complexity 1 36 0 3616 97 14 45 chr1 175640624 175641182 -67023171 - L1PA13 LINE L1 -14 6149 5609 2286 76 0 7 chr1 175641185 175641487 -67022866 + L1PA13 LINE L1 5298 5597 -566 2632 58 0 0 chr1 175641517 175641826 -67022527 + AluY SINE Alu 1 309 -2 248 178 0 0 chr1 175642109 175642154 -67022199 + L1P3 LINE L1 5783 5827 -327 313 317 88 13 chr1 175642739 175642966 -67021387 + MIR SINE MIR 1 244 -18 253 211 0 0 chr1 175643421 175643473 -67020880 - L2 LINE L2 0 3272 3221 911 202 28 0 chr1 175643548 175643726 -67020627 - MER5A DNA MER1_type -5 184 2 315 270 20 20 chr1 175643780 175643880 -67020473 - L2 LINE L2 -177 3095 2996 560 284 102 36 chr1 175643997 175644331 -67020022 - L2 LINE L2 -500 2814 2459 2201 103 10 17 chr1 175644334 175644634 -67019719 + AluJb SINE Alu 6 303 -9 2232 112 0 3 chr1 175645738 175646034 -67018319 + AluSg SINE Alu 1 295 -15 195 171 0 0 chr1 175646167 175646202 -67018151 - L3 LINE CR1 -4 1573 1539 2183 132 3 0 chr1 175646457 175646761 -67017592 - AluSx SINE Alu -7 305 1 419 269 129 11 chr1 175648150 175648336 -67016017 + MIR SINE MIR 55 262 0 398 306 9 0 chr1 175648886 175648994 -67015359 + L2 LINE L2 3146 3254 -18 459 189 0 79 chr1 175651438 175651565 -67012788 - MIR SINE MIR 0 262 146 1871 148 3 7 chr1 175651587 175651870 -67012483 - AluJo SINE Alu -30 282 1 190 94 31 0 chr1 175651870 175651902 -67012451 - MIR SINE MIR -99 163 131 245 177 81 0 chr1 175652025 175652087 -67012266 - L2 LINE L2 -210 3062 2996 1555 128 26 6 chr1 175652190 175652630 -67011723 - LTR54 LTR ERV1 0 510 1 2455 126 8 43 chr1 175652990 175653057 -67011296 - MSTC LTR MaLR -4 424 356 2566 56 0 0 chr1 175653057 175653359 -67010994 + AluY SINE Alu 1 302 -9 2455 126 8 43 chr1 175653359 175653689 -67010664 - MSTC LTR MaLR -72 356 41 309 118 39 0 chr1 175653750 175653801 -67010552 - MSTC LTR MaLR -373 55 3 224 364 42 0 chr1 175654131 175654249 -67010104 + MIR SINE MIR 20 142 -66 647 117 11 0 chr1 175654352 175654446 -67009907 + MER20 DNA MER1_type 125 219 0 323 351 54 0 chr1 175654447 175654595 -67009758 - L2 LINE L2 0 3272 3117 392 309 153 5 chr1 175654654 175654877 -67009476 + MIR SINE MIR 2 257 -5 207 167 0 0 chr1 175654877 175654913 -67009440 + (ATG)n Simple_repeat Simple_repeat 1 36 0 347 317 46 76 chr1 175654920 175655246 -67009107 - L2 LINE L2 -209 3063 2743 861 152 0 0 chr1 175655364 175655489 -67008864 - FLAM_C SINE Alu -18 125 1 180 0 0 0 chr1 175655655 175655675 -67008678 + (A)n Simple_repeat Simple_repeat 1 20 0 318 26 0 0 chr1 175655949 175655988 -67008365 + (T)n Simple_repeat Simple_repeat 1 39 0 1533 162 58 52 chr1 175656006 175656315 -67008038 - AluJb SINE Alu -1 311 1 218 232 43 58 chr1 175656327 175656396 -67007957 - MIR SINE MIR 0 262 195 480 350 17 6 chr1 175656595 175656772 -67007581 + MIR SINE MIR 34 212 -50 2341 106 0 3 chr1 175657087 175657388 -67006965 + AluSx SINE Alu 1 300 -12 354 234 13 0 chr1 175657990 175658067 -67006286 + MIR SINE MIR 176 253 -9 273 279 124 59 chr1 175658021 175658216 -67006137 - MIR SINE MIR -34 228 16 * 2361 82 0 0 chr1 175658314 175658619 -67005734 + AluY SINE Alu 1 305 -6 222 273 0 0 chr1 175659042 175659086 -67005267 + MIR SINE MIR 40 83 -125 258 296 133 22 chr1 175659142 175659277 -67005076 - MIR SINE MIR -66 196 47 253 289 11 56 chr1 175659316 175659406 -67004947 + MIR3 SINE MIR 100 185 -23 463 152 214 27 chr1 175659568 175659680 -67004673 - FLAM_A SINE Alu 0 133 1 180 0 0 0 chr1 175660145 175660165 -67004188 + (T)n Simple_repeat Simple_repeat 1 20 0 201 283 10 91 chr1 175660232 175660331 -67004022 + MIR SINE MIR 95 185 -77 3053 219 43 6 chr1 175660526 175661223 -67003130 - L1ME2 LINE L1 0 6164 5442 452 150 70 30 chr1 175661226 175661326 -67003027 + L1MD2 LINE L1 6246 6349 -10 697 200 7 29 chr1 175661343 175661542 -67002811 - L1M2 LINE L1 -706 5456 5265 347 309 73 0 chr1 175661858 175661981 -67002372 - L2 LINE L2 -2 3270 3139 2208 95 17 0 chr1 175662925 175663221 -67001132 + AluSx SINE Alu 1 301 -11 1950 130 0 7 chr1 175663368 175663660 -67000693 + AluSx SINE Alu 1 290 -22 2303 148 152 5 chr1 175663999 175664439 -66999914 - MLT1D LTR MaLR 0 505 1 2090 109 16 0 chr1 175665648 175665952 -66998401 + AluSx SINE Alu 1 309 -3 184 239 0 28 chr1 175666678 175666749 -66997604 + GA-rich Low_complexity Low_complexity 4 72 0 1125 250 13 0 chr1 175667447 175667679 -66996674 - MIR SINE MIR -17 245 11 513 298 63 6 chr1 175667757 175667915 -66996438 + MIR3 SINE MIR 2 168 -40 21 0 0 0 chr1 175668430 175668451 -66995902 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr1 175668470 175668494 -66995859 + (CA)n Simple_repeat Simple_repeat 1 24 0 2030 100 3 17 chr1 175670375 175670665 -66993688 + AluSx SINE Alu 1 286 -26 318 26 0 0 chr1 175670665 175670704 -66993649 + (CATA)n Simple_repeat Simple_repeat 2 40 0 297 280 259 0 chr1 175670853 175671089 -66993264 + L2 LINE L2 2475 2771 -543 569 314 30 91 chr1 175671116 175671329 -66993024 + L2 LINE L2 2869 3041 -272 2226 115 0 0 chr1 175671329 175671634 -66992719 - AluSx SINE Alu -7 305 1 569 314 30 91 chr1 175671634 175671881 -66992472 + L2 LINE L2 3041 3301 -12 236 164 0 131 chr1 175671868 175671929 -66992424 - L2 LINE L2 -13 3300 3248 * 299 274 178 30 chr1 175672431 175672566 -66991787 + MIR3 SINE MIR 6 160 -48 470 295 140 55 chr1 175672786 175673284 -66991069 - L2 LINE L2 0 3272 2737 907 271 96 38 chr1 175674264 175674496 -66989857 - L2 LINE L2 -704 2610 2344 2144 106 0 0 chr1 175674496 175674788 -66989565 + AluSx SINE Alu 1 292 -20 907 271 96 38 chr1 175674788 175674950 -66989403 - L2 LINE L2 -970 2344 2193 1722 155 0 30 chr1 175675603 175675929 -66988424 + AluJb SINE Alu 1 312 0 2104 115 26 3 chr1 175675965 175676269 -66988084 - AluSx SINE Alu -1 311 1 224 347 20 0 chr1 175676661 175676759 -66987594 - MIR SINE MIR -110 152 53 279 200 33 17 chr1 175676928 175676988 -66987365 + MIR3 SINE MIR 108 168 -40 2066 88 14 10 chr1 175677112 175677407 -66986946 - AluSx SINE Alu -16 296 1 290 247 11 0 chr1 175678031 175678124 -66986229 + GA-rich Low_complexity Low_complexity 3 96 0 245 323 169 23 chr1 175678384 175678514 -66985839 + L2 LINE L2 3119 3267 -5 231 260 52 0 chr1 175678768 175678845 -66985508 + MIR SINE MIR 118 198 -64 239 220 34 17 chr1 175679667 175679726 -66984627 + MIR SINE MIR 201 260 -2 216 324 0 28 chr1 175679783 175679854 -66984499 + L2 LINE L2 3192 3260 -12 204 377 109 14 chr1 175679939 175680077 -66984276 + MIR3 SINE MIR 33 183 -25 1281 154 72 38 chr1 175680156 175680448 -66983905 + AluJb SINE Alu 1 302 -10 923 74 0 0 chr1 175681804 175681925 -66982428 - L1PA7 LINE L1 -3 6151 6031 1792 105 11 8 chr1 175681925 175682192 -66982161 - AluSg1 SINE Alu -5 304 37 222 91 0 0 chr1 175682246 175682279 -66982074 + (CA)n Simple_repeat Simple_repeat 2 34 0 847 244 0 0 chr1 175682801 175683011 -66981342 - AluJo SINE Alu 0 332 123 347 292 185 31 chr1 175683180 175683505 -66980848 - L2 LINE L2 -5 3267 2893 2048 107 0 20 chr1 175683944 175684243 -66980110 + AluSx SINE Alu 1 293 -19 521 267 89 0 chr1 175684889 175685035 -66979318 - MIR SINE MIR -66 196 38 527 205 5 70 chr1 175685171 175685331 -66979022 + L1MC4 LINE L1 7870 8018 -24 817 159 0 23 chr1 175685331 175685463 -66978890 + FLAM_A SINE Alu 1 129 -4 527 205 5 70 chr1 175685463 175685487 -66978866 + L1MC4 LINE L1 8018 8042 0 2282 121 48 22 chr1 175685577 175685932 -66978421 - THE1B LTR MaLR 0 364 1 342 0 0 0 chr1 175685962 175686000 -66978353 + (TG)n Simple_repeat Simple_repeat 2 39 0 1173 196 23 0 chr1 175686964 175687178 -66977175 - MER20 DNA MER1_type 0 219 1 220 258 15 45 chr1 175687581 175687647 -66976706 + L2 LINE L2 1837 1900 -1414 413 292 97 23 chr1 175688297 175688423 -66975930 + L2 LINE L2 2610 2725 -589 1738 134 69 0 chr1 175688423 175688698 -66975655 + AluJo SINE Alu 1 294 -18 413 292 97 23 chr1 175688698 175688787 -66975566 + L2 LINE L2 2725 2841 -473 874 277 74 40 chr1 175689025 175689472 -66974881 - L1ME4a LINE L1 -223 5898 5436 1742 145 24 7 chr1 175689841 175689992 -66974361 + AluSq SINE Alu 1 148 -165 2059 114 0 0 chr1 175689992 175690272 -66974081 + AluSq SINE Alu 13 292 -21 1742 145 24 7 chr1 175690272 175690416 -66973937 + AluSq SINE Alu 148 301 -12 363 249 124 65 chr1 175690761 175690930 -66973423 - MIR SINE MIR -33 229 51 596 211 222 11 chr1 175691253 175691433 -66972920 - MLT1D LTR MaLR 0 505 288 513 185 33 11 chr1 175691420 175691512 -66972841 - MLT1D LTR MaLR -407 98 5 * 557 175 39 0 chr1 175691515 175691618 -66972735 + MER81 DNA DNA 8 114 0 2192 105 0 3 chr1 175691699 175692004 -66972349 + AluSq SINE Alu 1 304 -9 533 286 17 70 chr1 175694159 175694400 -66969953 + MIR SINE MIR 23 250 -12 327 344 48 73 chr1 175694618 175694686 -66969667 + L2 LINE L2 2912 2980 -292 2414 156 31 87 chr1 175694686 175695275 -66969078 - MER74A LTR ERVL 0 558 3 327 344 48 73 chr1 175695275 175695564 -66968789 + L2 LINE L2 2980 3260 -12 302 314 0 0 chr1 175696454 175696524 -66967829 + MER5A DNA MER1_type 10 79 -110 701 149 124 12 chr1 175696524 175696685 -66967668 + MER96B DNA MER1_type? 1 179 -238 313 250 250 0 chr1 175696741 175696833 -66967520 + MER5A DNA MER1_type 73 187 -2 701 178 13 38 chr1 175697025 175697123 -66967230 - L1MD2 LINE L1 -12 6347 6253 1930 161 19 40 chr1 175697123 175697291 -66967062 - MLT1A1 LTR MaLR 0 365 195 2182 97 0 26 chr1 175697291 175697600 -66966753 - AluSg SINE Alu -9 301 1 1930 161 19 40 chr1 175697600 175697804 -66966549 - MLT1A1 LTR MaLR -170 195 1 701 178 13 38 chr1 175697804 175697862 -66966491 - L1MD2 LINE L1 -106 6253 6195 560 254 58 17 chr1 175697863 175698036 -66966317 - L1MD2 LINE L1 -215 6144 5965 758 143 8 8 chr1 175698055 175698174 -66966179 - FLAM_C SINE Alu -11 132 14 1344 168 6 45 chr1 175698207 175698321 -66966032 - L1MD2 LINE L1 -303 5818 5701 2232 97 0 13 chr1 175698321 175698632 -66965721 - AluSx SINE Alu -5 307 1 1344 168 6 45 chr1 175698632 175698934 -66965419 - L1MD2 LINE L1 -420 5701 4508 180 0 0 0 chr1 175698934 175698954 -66965399 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3684 208 50 27 chr1 175699165 175700041 -66964312 - L1MD2 LINE L1 -1635 4511 3610 2299 71 7 0 chr1 175700041 175700338 -66964015 + AluSp SINE Alu 1 299 -14 3684 208 50 27 chr1 175700338 175700425 -66963928 - L1MD2 LINE L1 -2536 3610 3526 2046 113 7 3 chr1 175700908 175701199 -66963154 + AluSx SINE Alu 1 292 -20 3905 161 63 43 chr1 175701208 175701572 -66962781 + L1MC2 LINE L1 5450 5805 -539 2207 96 0 3 chr1 175701572 175701873 -66962480 + AluSq SINE Alu 1 300 -13 3905 161 63 43 chr1 175701873 175702381 -66961972 + L1MC2 LINE L1 5805 6339 -5 1845 163 7 0 chr1 175702420 175702727 -66961626 + AluSx SINE Alu 1 309 -3 2061 101 4 0 chr1 175702908 175703211 -66961142 - AluSg SINE Alu 0 304 1 24 0 0 0 chr1 175703538 175703562 -66960791 + AT_rich Low_complexity Low_complexity 1 24 0 230 287 49 33 chr1 175705897 175706019 -66958334 - MIR SINE MIR -67 141 18 195 298 0 0 chr1 175706117 175706174 -66958179 - L2 LINE L2 -2 3311 3255 2049 117 0 3 chr1 175706505 175706796 -66957557 + AluSx SINE Alu 1 290 -22 821 293 14 0 chr1 175707103 175707325 -66957028 - MIR SINE MIR -35 227 3 281 167 0 0 chr1 175707325 175707367 -66956986 - MIR SINE MIR -60 148 107 217 336 53 9 chr1 175708096 175708209 -66956144 - MIR SINE MIR -69 193 76 459 181 96 0 chr1 175708919 175709013 -66955340 - MLT1I LTR MaLR 0 409 307 464 321 81 18 chr1 175710539 175710760 -66953593 - MIR SINE MIR -20 242 8 668 205 137 0 chr1 175711079 175711240 -66953113 - MER5A DNA MER1_type -2 187 5 1530 151 47 7 chr1 175711331 175711452 -66952901 + AluJb SINE Alu 1 116 -196 222 91 0 0 chr1 175711452 175711485 -66952868 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1530 151 47 7 chr1 175711485 175711641 -66952712 + AluJb SINE Alu 116 289 -23 393 267 0 19 chr1 175711717 175711822 -66952531 - MIR SINE MIR -148 114 12 515 297 89 15 chr1 175711863 175712065 -66952288 - MIR SINE MIR -28 234 18 426 236 97 58 chr1 175712437 175712696 -66951657 + L1ME4a LINE L1 5849 6117 -4 892 188 35 0 chr1 175714698 175714900 -66949453 - MER63 DNA MER1_type 0 1062 854 1181 135 36 50 chr1 175716278 175716500 -66947853 - MER20 DNA MER1_type 0 219 1 1459 88 0 119 chr1 175716552 175716638 -66947715 + MER30 DNA MER1_type 1 96 -134 2404 68 3 3 chr1 175716638 175716947 -66947406 + AluSp SINE Alu 1 309 -4 1459 88 0 119 chr1 175716947 175717036 -66947317 + MER30 DNA MER1_type 96 138 -92 2134 123 0 0 chr1 175717036 175717336 -66947017 + AluSx SINE Alu 2 301 -11 1459 88 0 119 chr1 175717336 175717420 -66946933 + MER30 DNA MER1_type 138 230 0 257 301 68 0 chr1 175717762 175717835 -66946518 - L2 LINE L2 -2 3270 3193 183 42 0 0 chr1 175719920 175719944 -66944409 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 201 160 60 0 chr1 175720086 175720136 -66944217 + (CAGAGA)n Simple_repeat Simple_repeat 5 57 0 1934 86 9 98 chr1 175720188 175720513 -66943840 - AluSq SINE Alu -6 307 12 415 252 44 30 chr1 175720536 175720671 -66943682 + MIR SINE MIR 112 248 -14 295 184 0 0 chr1 175721159 175721208 -66943145 - MER69 DNA AcHobo 0 2526 2478 193 253 40 67 chr1 175721534 175721609 -66942744 + L3b LINE CR1 1412 1484 -99 328 190 0 140 chr1 175721698 175721756 -66942597 - MER81 DNA DNA -3 111 71 2164 94 10 0 chr1 175721756 175722053 -66942300 + AluY SINE Alu 1 300 -11 328 190 0 140 chr1 175722053 175722094 -66942259 - MER81 DNA DNA -43 71 26 949 118 0 0 chr1 175722935 175723070 -66941283 - FLAM_C SINE Alu -2 141 7 2210 86 0 3 chr1 175723113 175723405 -66940948 + AluSx SINE Alu 1 291 -21 2173 207 80 2 chr1 175723407 175723983 -66940370 - L1 LINE L1 -2565 3581 2961 5283 62 11 33 chr1 175724322 175725028 -66939325 + LTR8 LTR ERV1 1 691 0 294 314 17 17 chr1 175725108 175725226 -66939127 - MER5B DNA MER1_type -58 120 3 255 354 28 28 chr1 175725255 175725436 -66938917 + L2 LINE L2 1852 2032 -1282 2237 61 0 0 chr1 175725575 175725854 -66938499 - AluY SINE Alu -32 279 1 540 255 128 25 chr1 175725970 175726205 -66938148 + MLT1J LTR MaLR 1 259 -252 2236 101 0 3 chr1 175726491 175726798 -66937555 + AluSq SINE Alu 1 306 -7 1703 186 0 16 chr1 175727879 175728186 -66936167 - AluJo SINE Alu -10 302 1 288 237 21 10 chr1 175728410 175728507 -66935846 - L1ME4a LINE L1 -236 5885 5788 646 241 41 26 chr1 175728511 175728706 -66935647 - L1ME4a LINE L1 -381 5740 5543 795 180 0 98 chr1 175729395 175729492 -66934861 + MER5B DNA MER1_type 4 74 -104 2181 71 41 7 chr1 175729492 175729787 -66934566 + AluY SINE Alu 1 305 -6 795 180 0 98 chr1 175729787 175729883 -66934470 + MER5B DNA MER1_type 74 178 0 271 153 0 42 chr1 175729924 175729996 -66934357 + GA-rich Low_complexity Low_complexity 4 72 0 1568 260 32 95 chr1 175730771 175731215 -66933138 + L2 LINE L2 2008 2403 -911 2302 92 7 0 chr1 175731215 175731519 -66932834 - AluSg SINE Alu -3 307 2 1568 260 32 95 chr1 175731519 175731697 -66932656 + L2 LINE L2 2403 2591 -723 1824 200 68 46 chr1 175731702 175732158 -66932195 + MLT1D LTR MaLR 3 468 -37 488 245 175 7 chr1 175732171 175732314 -66932039 + L2 LINE L2 2580 2746 -568 230 297 0 40 chr1 175732314 175732388 -66931965 + L2 LINE L2 3020 3090 -223 190 288 99 54 chr1 175733311 175733422 -66930931 - MER5B DNA MER1_type -62 116 1 299 262 48 29 chr1 175734280 175734383 -66929970 - L2 LINE L2 -41 3272 3168 464 283 49 45 chr1 175734560 175734715 -66929638 - L2 LINE L2 -5 3308 3155 1628 128 12 95 chr1 175734715 175735051 -66929302 + AluJo SINE Alu 1 308 -4 464 283 49 45 chr1 175735051 175735199 -66929154 - L2 LINE L2 -158 3155 2922 587 256 81 23 chr1 175735568 175735740 -66928613 - MIR SINE MIR -10 252 71 2334 64 0 3 chr1 175735842 175736139 -66928214 - AluY SINE Alu -15 296 1 231 333 31 23 chr1 175737280 175737409 -66926944 + L2 LINE L2 2915 3044 -228 189 167 24 24 chr1 175737447 175737489 -66926864 + L2 LINE L2 3272 3313 0 * 302 234 16 0 chr1 175737486 175737550 -66926803 - MIR SINE MIR 0 262 198 2136 116 0 0 chr1 175737707 175738008 -66926345 - AluSq SINE Alu -12 301 1 2062 148 92 5 chr1 175738902 175739273 -66925080 + MER57A LTR ERV1 1 403 0 564 215 19 6 chr1 175739668 175739826 -66924527 + CT-rich Low_complexity Low_complexity 1 160 0 190 288 99 54 chr1 175740060 175740171 -66924182 + MER5B DNA MER1_type 1 116 -62 230 297 0 40 chr1 175741094 175741168 -66923185 - L2 LINE L2 -223 3090 3020 475 252 175 7 chr1 175741168 175741311 -66923042 - L2 LINE L2 -568 2746 2580 1811 219 62 38 chr1 175741324 175741776 -66922577 - MLT1D LTR MaLR -37 468 6 624 295 22 6 chr1 175741776 175741959 -66922394 - L2 LINE L2 -711 2603 2418 2239 90 6 13 chr1 175741962 175742273 -66922080 + AluSg SINE Alu 2 310 0 339 320 8 0 chr1 175742279 175742401 -66921952 + MIR SINE MIR 137 259 -3 937 219 58 76 chr1 175743312 175743641 -66920712 - MER5C DNA MER1_type -1 323 1 342 215 22 52 chr1 175743666 175743893 -66920460 + Charlie7 DNA MER1_type 38 2608 -4 200 287 82 82 chr1 175746739 175746934 -66917419 + L2 LINE L2 1636 1830 -1484 344 136 0 0 chr1 175746944 175747003 -66917350 - Alu SINE Alu -2 300 242 775 290 87 107 chr1 175747111 175748470 -66915883 + L2 LINE L2 1878 3193 -79 252 383 19 9 chr1 175749365 175749472 -66914881 - MIR3 SINE MIR -92 116 9 251 269 74 65 chr1 175749998 175750106 -66914247 + L2 LINE L2 3154 3262 -10 2042 113 0 49 chr1 175752611 175752939 -66911414 + AluSx SINE Alu 1 312 0 1110 174 28 67 chr1 175753615 175753868 -66910485 - MIR SINE MIR -2 260 18 242 206 27 41 chr1 175754185 175754258 -66910095 - MER5A DNA MER1_type 0 189 118 299 289 77 47 chr1 175754346 175754662 -66909691 - MLT1H1 LTR MaLR -19 536 85 383 252 274 13 chr1 175754853 175755083 -66909270 - L2 LINE L2 0 3313 3024 2492 50 0 0 chr1 175755233 175755532 -66908821 + AluY SINE Alu 1 299 -12 180 302 172 17 chr1 175755646 175755762 -66908591 - MIR SINE MIR -30 232 99 201 254 139 135 chr1 175757148 175757436 -66906917 - L2 LINE L2 -858 2456 2168 689 238 172 31 chr1 175757655 175757882 -66906471 - MIR SINE MIR -1 261 3 2263 105 20 0 chr1 175758766 175759071 -66905282 - AluSx SINE Alu -1 311 1 2315 87 3 13 chr1 175759438 175759747 -66904606 + AluSx SINE Alu 1 306 -6 652 172 117 47 chr1 175760588 175760716 -66903637 + AluJb SINE Alu 2 138 -174 1483 189 42 21 chr1 175760718 175761004 -66903349 + AluJo SINE Alu 6 297 -15 2163 121 0 7 chr1 175761750 175762055 -66902298 - AluSq SINE Alu -10 303 1 2131 62 44 7 chr1 175763556 175763828 -66900525 + AluY SINE Alu 14 295 -16 2350 71 0 7 chr1 175763880 175764174 -66900179 + AluSc SINE Alu 1 292 -17 24 0 0 0 chr1 175764635 175764659 -66899694 + AT_rich Low_complexity Low_complexity 1 24 0 2119 134 0 0 chr1 175766125 175766423 -66897930 + AluSx SINE Alu 1 298 -14 2235 96 7 0 chr1 175766590 175766881 -66897472 - AluSx SINE Alu -19 293 1 368 323 129 25 chr1 175766996 175767197 -66897156 - L2 LINE L2 -964 2350 2129 1160 188 5 5 chr1 175767227 175767440 -66896913 + AluJb SINE Alu 92 304 -8 1677 167 23 13 chr1 175767575 175767875 -66896478 + AluJo SINE Alu 3 305 -7 2210 87 0 24 chr1 175768820 175769155 -66895198 + AluSx SINE Alu 1 328 0 296 279 212 22 chr1 175770072 175770294 -66894059 + L2 LINE L2 2055 2318 -996 318 302 157 38 chr1 175770295 175770613 -66893740 + LTR33 LTR ERVL 1 356 -165 1120 269 114 36 chr1 175770725 175771171 -66893182 + L2 LINE L2 2331 2811 -503 895 283 74 26 chr1 175771205 175771544 -66892809 + L2 LINE L2 2959 3313 0 282 250 142 68 chr1 175771655 175771831 -66892522 + MIR3 SINE MIR 15 203 -5 1234 141 57 126 chr1 175772649 175773005 -66891348 - MER33 DNA MER1_type -7 317 1 314 314 37 30 chr1 175773422 175773583 -66890770 + MER5A DNA MER1_type 14 178 0 598 314 128 30 chr1 175775108 175775690 -66888663 - L2 LINE L2 0 3313 2643 525 253 236 4 chr1 175775731 175775960 -66888393 - L2 LINE L2 -832 2482 2201 813 20 0 20 chr1 175776062 175776160 -66888193 + L1PA4 LINE L1 6060 6155 0 2134 102 7 10 chr1 175776891 175777196 -66887157 - AluY SINE Alu -7 304 1 266 308 26 0 chr1 175777845 175777923 -66886430 - L2 LINE L2 -9 3263 3184 2352 91 10 0 chr1 175778702 175779000 -66885353 + AluSp SINE Alu 1 301 -12 288 0 0 0 chr1 175779238 175779270 -66885083 + (TG)n Simple_repeat Simple_repeat 2 33 0 1965 112 25 0 chr1 175779826 175780131 -66884222 + AluSx SINE Alu 1 312 0 2351 107 0 0 chr1 175780711 175781020 -66883333 - AluSq SINE Alu -4 309 1 863 148 16 0 chr1 175781511 175781639 -66882714 + FLAM_C SINE Alu 2 131 -2 893 223 34 48 chr1 175782064 175782333 -66882020 + L1ME2 LINE L1 5900 6164 0 276 301 19 10 chr1 175783049 175783152 -66881201 - L1MC5 LINE L1 -143 7818 7715 1529 153 60 53 chr1 175783418 175783719 -66880634 + AluJb SINE Alu 1 303 -9 254 294 186 0 chr1 175783720 175783822 -66880531 + MIR SINE MIR 12 132 -130 22 0 0 0 chr1 175785007 175785029 -66879324 + AT_rich Low_complexity Low_complexity 1 22 0 1976 121 34 24 chr1 175786583 175786881 -66877472 + AluSx SINE Alu 3 303 -9 180 0 0 0 chr1 175788055 175788075 -66876278 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 175788434 175788456 -66875897 + AT_rich Low_complexity Low_complexity 1 22 0 1572 176 27 30 chr1 175788837 175789138 -66875215 + AluJo SINE Alu 1 300 -12 293 296 31 20 chr1 175789551 175789649 -66874704 + MIR SINE MIR 14 112 -150 22 0 0 0 chr1 175793039 175793061 -66871292 + AT_rich Low_complexity Low_complexity 1 22 0 270 81 0 0 chr1 175793527 175793564 -66870789 + (TA)n Simple_repeat Simple_repeat 1 37 0 437 169 0 0 chr1 175793599 175793664 -66870689 - MER58 DNA MER1_type -2 2418 2354 2118 128 10 0 chr1 175793723 175794019 -66870334 + AluSx SINE Alu 1 299 -13 249 234 54 6 chr1 175797201 175797368 -66866985 + (CACAC)n Simple_repeat Simple_repeat 1 175 0 205 247 42 18 chr1 175797676 175797842 -66866511 + (CACAC)n Simple_repeat Simple_repeat 1 170 0 1274 108 16 0 chr1 175798180 175798365 -66865988 - L1MD3 LINE L1 0 7995 7808 3588 197 101 47 chr1 175798705 175798808 -66865545 - L1MD3 LINE L1 0 8042 7946 2758 41 13 0 chr1 175798808 175799123 -66865230 + L1PA5 LINE L1 5827 6145 -9 3588 197 101 47 chr1 175799123 175799372 -66864981 - L1MD3 LINE L1 -96 7946 7712 1982 189 68 64 chr1 175799372 175799559 -66864794 + MLT1D LTR MaLR 1 186 -319 2045 133 7 3 chr1 175799559 175799860 -66864493 + AluSx SINE Alu 1 302 -10 1982 189 68 64 chr1 175799860 175800108 -66864245 + MLT1D LTR MaLR 186 441 -64 2221 120 0 0 chr1 175800108 175800408 -66863945 - AluSq SINE Alu -13 300 1 1982 189 68 64 chr1 175800408 175800474 -66863879 + MLT1D LTR MaLR 441 505 0 3588 197 101 47 chr1 175800474 175800972 -66863381 - L1MD3 LINE L1 -330 7712 7133 1995 114 21 10 chr1 175800972 175801281 -66863072 - AluSg1 SINE Alu 0 309 1 3588 197 101 47 chr1 175801281 175801468 -66862885 - L1MD3 LINE L1 -909 7133 6958 5910 142 10 16 chr1 175801471 175802471 -66861882 - L1MA6 LINE L1 0 6300 5307 4313 154 50 18 chr1 175802471 175802694 -66861659 + Tigger2 DNA MER2_type 1 215 -2503 2258 102 0 13 chr1 175802694 175802999 -66861354 + AluSq SINE Alu 1 301 -12 2177 115 0 0 chr1 175803002 175803297 -66861056 + AluSg SINE Alu 1 295 -15 4313 154 50 18 chr1 175803297 175803802 -66860551 + Tigger2 DNA MER2_type 216 757 -1961 1375 167 41 4 chr1 175803857 175804103 -66860250 + Tigger2 DNA MER2_type 2462 2716 -2 738 164 7 7 chr1 175804105 175804257 -66860096 - L1MA6 LINE L1 -838 5308 5157 871 56 0 0 chr1 175804270 175804378 -66859975 - AluSg/x SINE Alu 0 310 203 714 228 10 27 chr1 175804383 175804566 -66859787 - L1MC4 LINE L1 -933 6960 6693 561 168 0 11 chr1 175804863 175804958 -66859395 - Tigger7 DNA MER2_type -1 2490 2397 910 265 20 16 chr1 175804966 175805215 -66859138 - Tigger7 DNA MER2_type -2232 255 6 573 196 9 9 chr1 175805522 175805629 -66858724 - Tigger7 DNA MER2_type -626 107 1 2320 101 0 3 chr1 175806105 175806413 -66857940 + AluSx SINE Alu 1 307 -5 628 210 31 56 chr1 175806721 175806883 -66857470 + MER5A DNA MER1_type 3 160 -29 1053 110 0 0 chr1 175807330 175807476 -66856877 - AluSg/x SINE Alu -11 301 156 207 262 206 9 chr1 175807746 175807853 -66856500 + MIR SINE MIR 78 205 -57 494 202 26 0 chr1 175807879 175807993 -66856360 - MER69A DNA AcHobo -4 173 57 2356 63 0 10 chr1 175808419 175808718 -66855635 - AluY SINE Alu -15 296 1 2353 92 0 3 chr1 175808964 175809268 -66855085 - AluSc SINE Alu -6 303 1 3750 288 123 39 chr1 175809276 175811448 -66852905 - L2 LINE L2 -179 3134 771 210 37 0 0 chr1 175813065 175813092 -66851261 + (TAA)n Simple_repeat Simple_repeat 1 27 0 3084 179 60 46 chr1 175813647 175814185 -66850168 + L1MC3 LINE L1 7045 7598 -187 2105 122 4 0 chr1 175814185 175814491 -66849862 - AluSg SINE Alu 0 307 1 3084 179 60 46 chr1 175814491 175814667 -66849686 + L1MC3 LINE L1 7598 7770 -15 506 253 42 58 chr1 175814970 175815160 -66849193 - MIR SINE MIR -60 202 16 180 0 0 0 chr1 175816026 175816046 -66848307 + (T)n Simple_repeat Simple_repeat 1 20 0 2150 109 0 3 chr1 175816189 175816501 -66847852 + AluSx SINE Alu 1 311 0 888 246 42 0 chr1 175817010 175817225 -66847128 - MER58A DNA MER1_type 0 224 1 225 200 0 0 chr1 175817228 175817268 -66847085 + MLT1L LTR MaLR 151 190 -425 483 240 93 81 chr1 175817437 175817624 -66846729 + MLT1L LTR MaLR 363 555 -60 2445 76 0 3 chr1 175817624 175817926 -66846427 - AluY SINE Alu -10 301 1 483 240 93 81 chr1 175817926 175817984 -66846369 + MLT1L LTR MaLR 555 611 -4 1004 182 50 140 chr1 175818182 175818583 -66845770 - MLT1A1 LTR MaLR 0 365 1 2149 127 3 0 chr1 175818813 175819105 -66845248 - AluSx SINE Alu -18 294 2 2347 101 3 0 chr1 175819310 175819608 -66844745 - AluSx SINE Alu -13 299 1 503 231 144 10 chr1 175819717 175819912 -66844441 - L2 LINE L2 0 3313 3093 392 300 39 17 chr1 175819969 175820149 -66844204 - L2 LINE L2 -379 2935 2752 1833 188 0 0 chr1 175820309 175820613 -66843740 + AluJb SINE Alu 1 304 -8 26 64 0 0 chr1 175820876 175820923 -66843430 + AT_rich Low_complexity Low_complexity 1 47 0 1900 174 0 3 chr1 175821398 175821696 -66842657 + AluJb SINE Alu 1 297 -15 452 137 147 11 chr1 175821891 175821986 -66842367 - MER3 DNA MER1_type 0 209 102 255 179 0 0 chr1 175822338 175822377 -66841976 - Alu SINE Alu -260 39 1 4780 195 61 46 chr1 175822387 175822486 -66841867 + L1MA9 LINE L1 3589 3685 -2627 1950 134 0 7 chr1 175822486 175822755 -66841598 + AluSx SINE Alu 1 267 -45 4780 195 61 46 chr1 175822755 175823102 -66841251 + L1MA9 LINE L1 3685 4025 -2287 2198 110 0 16 chr1 175823102 175823411 -66840942 - AluSg SINE Alu -5 305 2 4780 195 61 46 chr1 175823411 175823574 -66840779 + L1MA9 LINE L1 4025 4184 -2128 2157 133 0 0 chr1 175823574 175823874 -66840479 + AluSx SINE Alu 1 300 -12 4780 195 61 46 chr1 175823874 175824806 -66839547 + L1MA9 LINE L1 4184 5101 -1211 1496 142 69 62 chr1 175824806 175825080 -66839273 + AluJo SINE Alu 7 282 -30 258 32 0 0 chr1 175825087 175825118 -66839235 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4780 195 61 46 chr1 175825118 175825580 -66838773 + L1MA9 LINE L1 5106 5560 -752 447 19 0 0 chr1 175825580 175825632 -66838721 + (CA)n Simple_repeat Simple_repeat 2 53 0 4780 195 61 46 chr1 175825632 175825879 -66838474 + L1MA9 LINE L1 5560 6047 -265 673 261 60 49 chr1 175825880 175826229 -66838124 + L1MA9 LINE L1 5922 6274 -38 322 109 34 42 chr1 175826229 175826348 -66838005 + (TATAA)n Simple_repeat Simple_repeat 2 119 0 701 258 16 5 chr1 175826426 175826612 -66837741 - MIR SINE MIR -17 245 58 306 206 0 0 chr1 175827579 175827647 -66836706 + (CA)n Simple_repeat Simple_repeat 1 68 0 258 32 0 0 chr1 175827650 175827681 -66836672 + (CAG)n Simple_repeat Simple_repeat 2 32 0 374 313 54 12 chr1 175828834 175829000 -66835353 - MIR3 SINE MIR -8 200 28 468 0 0 0 chr1 175829804 175829856 -66834497 + (CA)n Simple_repeat Simple_repeat 2 53 0 396 0 0 0 chr1 175830605 175830649 -66833704 + (CA)n Simple_repeat Simple_repeat 2 45 0 195 100 0 0 chr1 175831981 175832011 -66832342 + (T)n Simple_repeat Simple_repeat 1 30 0 2170 117 7 10 chr1 175832203 175832512 -66831841 - AluSq SINE Alu -5 308 1 2386 90 0 3 chr1 175833353 175833653 -66830700 - AluY SINE Alu -12 299 1 338 257 126 103 chr1 175833859 175834073 -66830280 + MLT1J1 LTR MaLR 63 281 -165 416 256 188 0 chr1 175835006 175835123 -66829230 + L2 LINE L2 3134 3272 0 246 116 0 0 chr1 175835130 175835173 -66829180 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 335 268 107 38 chr1 175837375 175837605 -66826748 + MIR SINE MIR 2 246 -16 205 200 0 0 chr1 175837726 175837766 -66826587 + T-rich Low_complexity Low_complexity 1 40 0 2354 107 7 0 chr1 175838265 175838575 -66825778 - AluSx SINE Alu 0 312 1 519 291 52 22 chr1 175838617 175838847 -66825506 + L2 LINE L2 2551 2787 -527 480 285 0 64 chr1 175840768 175840940 -66823413 - MIR3 SINE MIR -18 190 30 1813 162 3 27 chr1 175841647 175841944 -66822409 - AluJo SINE Alu -22 290 1 210 214 0 0 chr1 175841980 175842022 -66822331 + L2 LINE L2 3272 3313 0 1145 152 0 0 chr1 175843131 175843296 -66821057 - AluJb SINE Alu -11 301 137 180 133 213 53 chr1 175844970 175845045 -66819308 - MER5B DNA MER1_type -16 162 76 2404 105 0 0 chr1 175845352 175845658 -66818695 + AluSq SINE Alu 1 306 -7 315 261 59 17 chr1 175845807 175845926 -66818427 + L1ME4a LINE L1 5928 6051 -70 422 170 11 0 chr1 175846179 175846273 -66818080 + CT-rich Low_complexity Low_complexity 3 97 0 255 61 0 0 chr1 175846274 175846307 -66818046 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 568 268 103 41 chr1 175847457 175847651 -66816702 + MIR SINE MIR 3 208 -54 360 270 20 0 chr1 175848910 175849010 -66815343 - MIR SINE MIR -117 145 44 329 335 63 44 chr1 175849222 175849380 -66814973 + L2 LINE L2 3112 3272 0 212 344 43 0 chr1 175849528 175849621 -66814732 - MIR SINE MIR -71 137 41 2205 120 3 0 chr1 175849884 175850184 -66814169 - AluSx SINE Alu -11 301 1 652 304 44 4 chr1 175852995 175853222 -66811131 + MIR SINE MIR 14 249 -13 185 284 95 26 chr1 175854714 175854830 -66809523 - L2 LINE L2 -202 3070 2947 297 0 0 0 chr1 175854830 175854863 -66809490 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 306 59 65 chr1 175855077 175855247 -66809106 + L2 LINE L2 2715 2883 -431 315 369 50 57 chr1 175855317 175855599 -66808754 + L2 LINE L2 2965 3244 -28 354 313 147 0 chr1 175855981 175856131 -66808222 + L2 LINE L2 3101 3272 0 394 256 43 43 chr1 175856740 175856904 -66807449 - MIR SINE MIR -55 207 44 2618 55 0 3 chr1 175857783 175858090 -66806263 - AluY SINE Alu -5 306 1 200 219 0 0 chr1 175859481 175859522 -66804831 - L2 LINE L2 -9 3304 3264 * 601 258 122 9 chr1 175859491 175859704 -66804649 - MIR SINE MIR -13 249 13 186 224 0 0 chr1 175859902 175859951 -66804402 + GA-rich Low_complexity Low_complexity 2 50 0 2424 160 82 51 chr1 175861986 175862512 -66801841 - L1MB8 LINE L1 -15 6163 5622 297 0 0 0 chr1 175862532 175862565 -66801788 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 191 200 36 0 chr1 175862763 175862818 -66801535 + L2 LINE L2 2444 2500 -814 186 306 164 47 chr1 175863326 175863558 -66800795 - L2 LINE L2 -365 2949 2691 567 318 59 14 chr1 175864035 175864255 -66800098 + MIR SINE MIR 20 249 -13 770 260 124 25 chr1 175865112 175865622 -66798731 + L2 LINE L2 2529 3096 -217 2016 78 108 0 chr1 175865865 175866134 -66798219 - AluSp SINE Alu -15 298 1 1658 120 4 4 chr1 175866163 175866396 -66797957 - AluSg SINE Alu -77 233 1 190 313 94 0 chr1 175866674 175866738 -66797615 - MIR SINE MIR -4 258 189 215 307 104 59 chr1 175866918 175867495 -66796858 - L2 LINE L2 -718 2596 1994 23 33 0 0 chr1 175868077 175868107 -66796246 + AT_rich Low_complexity Low_complexity 1 30 0 1801 148 16 16 chr1 175868108 175868419 -66795934 + AluJo SINE Alu 1 311 -1 294 327 23 0 chr1 175869338 175869452 -66794901 + MIR SINE MIR 19 137 -71 430 320 80 11 chr1 175869520 175869695 -66794658 - MIR SINE MIR -72 190 4 560 288 47 33 chr1 175869719 175869931 -66794422 + MIR SINE MIR 47 261 -1 2214 123 0 3 chr1 175870937 175871247 -66793106 + AluSg SINE Alu 1 309 -1 200 111 28 0 chr1 175871757 175871793 -66792560 + CT-rich Low_complexity Low_complexity 2 38 0 420 328 51 34 chr1 175872217 175872394 -66791959 - Charlie8 DNA MER1_type -2182 235 56 2348 82 0 26 chr1 175873247 175873553 -66790800 - AluSx SINE Alu -13 299 2 691 265 49 5 chr1 175873675 175873860 -66790493 - MIR SINE MIR -42 220 28 208 315 19 0 chr1 175873900 175873954 -66790399 - L3 LINE CR1 -59 1518 1464 307 118 15 15 chr1 175874045 175874113 -66790240 + (CA)n Simple_repeat Simple_repeat 2 69 0 528 310 190 43 chr1 175874208 175874576 -66789777 - L3 LINE CR1 -320 1257 836 2301 112 0 0 chr1 175874793 175875096 -66789257 + AluSq SINE Alu 1 303 -10 1793 141 0 111 chr1 175875270 175875603 -66788750 - AluJb SINE Alu -6 296 1 1789 185 0 3 chr1 175875605 175875908 -66788445 - AluJb SINE Alu -10 302 1 375 263 21 84 chr1 175876635 175876825 -66787528 - Charlie8 DNA MER1_type -2186 231 54 207 315 0 0 chr1 175876922 175876976 -66787377 + L2 LINE L2 3219 3272 0 423 211 0 127 chr1 175877036 175877249 -66787104 - L2 LINE L2 -51 3262 3077 26 0 0 0 chr1 175877540 175877566 -66786787 + AT_rich Low_complexity Low_complexity 1 26 0 1201 153 11 0 chr1 175877669 175877883 -66786470 - AluSx SINE Alu 0 310 119 996 92 31 0 chr1 175878157 175878287 -66786066 - AluSx SINE Alu -178 134 1 230 191 106 32 chr1 175878366 175878460 -66785893 - L2 LINE L2 -577 2737 2637 * 244 306 74 16 chr1 175878433 175878554 -66785799 - L2 LINE L2 -275 2997 2870 2350 84 3 0 chr1 175879511 175879807 -66784546 - AluSx SINE Alu -15 297 1 322 260 99 35 chr1 175880041 175880216 -66784137 + L2 LINE L2 2637 3048 -224 201 98 39 20 chr1 175880346 175880397 -66783956 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 578 122 10 0 chr1 175880411 175880509 -66783844 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 2196 90 7 3 chr1 175880534 175880822 -66783531 + AluSc SINE Alu 21 309 0 2209 102 0 16 chr1 175881472 175881786 -66782567 + AluSc SINE Alu 1 309 0 896 323 157 19 chr1 175881890 175882188 -66782165 + L2 LINE L2 1982 2238 -1076 192 77 0 0 chr1 175882188 175882214 -66782139 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2276 93 0 7 chr1 175882216 175882518 -66781835 - AluY SINE Alu -11 300 1 896 323 157 19 chr1 175882518 175882988 -66781365 + L2 LINE L2 2238 2859 -455 2183 119 3 0 chr1 175883474 175883768 -66780585 + AluSq SINE Alu 1 295 -18 1796 149 62 0 chr1 175885691 175885967 -66778386 + AluSx SINE Alu 1 293 -19 2072 114 0 10 chr1 175886906 175887203 -66777150 + AluY SINE Alu 1 294 -17 228 257 54 40 chr1 175887247 175887321 -66777032 + MIR SINE MIR 75 144 -64 413 298 50 14 chr1 175887333 175887474 -66776879 + MIR3 SINE MIR 61 206 -2 2183 119 0 3 chr1 175888042 175888335 -66776018 - AluSx SINE Alu -20 292 1 464 259 192 67 chr1 175889662 175889886 -66774467 - MIR SINE MIR -7 255 4 762 118 0 3 chr1 175890380 175890601 -66773752 - AluJb SINE Alu -31 281 3 450 305 119 75 chr1 175890608 175891103 -66773250 + L2 LINE L2 2383 2899 -415 480 234 169 33 chr1 175891251 175891435 -66772918 - MIR SINE MIR -33 229 21 261 255 223 51 chr1 175892014 175892171 -66772182 + MIR3 SINE MIR 9 192 -16 446 188 55 47 chr1 175892284 175892412 -66771941 - L1MA9 LINE L1 -35 6277 6149 199 161 0 0 chr1 175892923 175892954 -66771399 + L2 LINE L2 3238 3268 -4 205 98 20 20 chr1 175894268 175894319 -66770034 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 1516 176 4 0 chr1 175894319 175894564 -66769789 - AluJo SINE Alu -66 246 1 900 241 13 22 chr1 175895690 175895914 -66768439 - MIR SINE MIR -21 241 20 517 262 158 20 chr1 175896449 175896651 -66767702 + MIR SINE MIR 12 241 -21 23 33 0 0 chr1 175896676 175896706 -66767647 + AT_rich Low_complexity Low_complexity 1 30 0 2103 136 0 3 chr1 175896959 175897260 -66767093 - AluSx SINE Alu -12 300 1 229 61 0 0 chr1 175897278 175897311 -66767042 + Alu SINE Alu 261 293 -7 1195 157 89 4 chr1 175897512 175897747 -66766606 + L1ME1 LINE L1 5795 6049 -117 2248 107 7 0 chr1 175897778 175898077 -66766276 + AluSx SINE Alu 6 306 -6 2306 79 0 31 chr1 175898077 175898395 -66765958 + AluY SINE Alu 1 308 -3 2097 127 0 35 chr1 175899739 175900053 -66764300 + AluSx SINE Alu 1 303 -9 246 284 14 0 chr1 175900701 175900775 -66763578 - MIR SINE MIR -51 211 137 2496 105 61 114 chr1 175901803 175902439 -66761914 + MER4A LTR ERV1 1 465 0 504 81 0 0 chr1 175902549 175902611 -66761742 - AluY SINE Alu -23 289 228 1367 69 0 12 chr1 175902611 175902784 -66761569 - AluY SINE Alu -140 171 1 234 0 0 0 chr1 175902816 175902842 -66761511 + (TC)n Simple_repeat Simple_repeat 2 27 0 2177 98 20 7 chr1 175902859 175903155 -66761198 - AluSc SINE Alu -9 300 1 30 59 0 0 chr1 175903296 175903347 -66761006 + AT_rich Low_complexity Low_complexity 1 51 0 26 0 0 0 chr1 175903635 175903661 -66760692 + AT_rich Low_complexity Low_complexity 1 26 0 389 288 25 61 chr1 175904016 175904179 -66760174 + MER91A DNA MER1_type 4 160 -36 4578 104 62 6 chr1 175904215 175904411 -66759942 - L1MA2 LINE L1 0 6304 6120 2266 91 0 3 chr1 175904411 175904697 -66759656 - AluSc SINE Alu -24 285 1 4578 104 62 6 chr1 175904697 175905182 -66759171 - L1MA2 LINE L1 -184 6120 5585 821 172 207 6 chr1 175905946 175906120 -66758233 + MER3 DNA MER1_type 1 209 0 1881 174 0 3 chr1 175906315 175906613 -66757740 - AluJb SINE Alu -15 297 1 21 0 0 0 chr1 175907088 175907109 -66757244 + AT_rich Low_complexity Low_complexity 1 21 0 2133 76 45 7 chr1 175907564 175907852 -66756501 - AluY SINE Alu -12 299 1 3888 162 54 37 chr1 175909541 175910318 -66754035 + L1MC1 LINE L1 5524 6313 -20 505 0 0 0 chr1 175910319 175910375 -66753978 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 484 119 15 0 chr1 175910375 175910442 -66753911 - AluY SINE Alu -1 338 216 297 170 0 19 chr1 175910439 175910492 -66753861 - AluSc SINE Alu -131 168 117 * 1015 115 0 0 chr1 175910592 175910722 -66753631 - AluSq/x SINE Alu -182 130 1 2127 113 7 3 chr1 175910850 175911152 -66753201 + AluSq SINE Alu 1 303 -10 2065 122 17 3 chr1 175911784 175912072 -66752281 - AluSx SINE Alu -16 296 5 331 119 0 60 chr1 175912442 175912509 -66751844 + AluSg/x SINE Alu 137 199 -103 2214 98 0 3 chr1 175912510 175912795 -66751558 + AluSx SINE Alu 29 312 0 2046 97 65 7 chr1 175913028 175913307 -66751046 - AluSp SINE Alu -16 297 3 2458 64 3 3 chr1 175913442 175913737 -66750616 - AluY SINE Alu -16 295 1 2589 135 18 20 chr1 175914152 175914241 -66750112 + L1PB1 LINE L1 5698 5786 -365 180 0 0 0 chr1 175914241 175914261 -66750092 + (TA)n Simple_repeat Simple_repeat 1 20 0 2589 135 18 20 chr1 175914261 175914624 -66749729 + L1PB1 LINE L1 5786 6149 -2 1702 163 38 7 chr1 175916623 175916911 -66747442 + AluJb SINE Alu 2 298 -14 251 333 10 0 chr1 175917932 175918034 -66746319 + L1 LINE L1 3607 3709 -2437 434 213 0 0 chr1 175918249 175918329 -66746024 - AluS SINE Alu -232 80 1 226 284 0 15 chr1 175919626 175919693 -66744660 - MIR3 SINE MIR -24 184 119 317 329 50 7 chr1 175919745 175919885 -66744468 + L2 LINE L2 3168 3313 0 2322 87 37 0 chr1 175920462 175920762 -66743591 - AluSp SINE Alu -2 311 1 327 285 53 57 chr1 175920956 175921011 -66743342 - L2 LINE L2 -12 3301 3247 620 259 95 0 chr1 175921011 175921243 -66743110 - MER112 DNA MER1_type -1 255 2 327 285 53 57 chr1 175921243 175921415 -66742938 - L2 LINE L2 -66 3247 3075 1721 174 148 16 chr1 175922452 175922890 -66741463 + LTR54B LTR ERV1 1 496 -2 521 175 40 24 chr1 175923911 175924037 -66740316 - MER58B DNA MER1_type -3 338 211 2131 124 7 0 chr1 175924652 175924950 -66739403 + AluSx SINE Alu 3 302 -10 3484 230 120 52 chr1 175925219 175926630 -66737723 - L2 LINE L2 -1 3312 1760 783 228 0 12 chr1 175926630 175926797 -66737556 - FRAM SINE Alu -1 165 1 3484 230 120 52 chr1 175926797 175926920 -66737433 - L2 LINE L2 -1553 1760 1647 255 293 48 109 chr1 175927211 175927358 -66736995 + MER5A DNA MER1_type 2 139 -50 * 451 279 10 10 chr1 175927255 175927359 -66736994 - MER5A DNA MER1_type -25 164 61 263 139 47 0 chr1 175927379 175927422 -66736931 - MER4E LTR ERV1 -69 697 653 240 273 15 15 chr1 175927422 175927488 -66736865 + MER5B DNA MER1_type 112 177 -1 3318 73 95 3 chr1 175927958 175928442 -66735911 - MER1A DNA MER1_type 0 533 1 1386 249 46 8 chr1 175929085 175929584 -66734769 + MER82 DNA MER2_type 50 645 -8 198 71 0 0 chr1 175929865 175929893 -66734460 + (CA)n Simple_repeat Simple_repeat 2 29 0 186 71 0 0 chr1 175929942 175929970 -66734383 + (A)n Simple_repeat Simple_repeat 1 28 0 5916 74 31 22 chr1 176030664 176031808 -66632545 - SVA Other Other -518 868 1 330 356 0 10 chr1 176032159 176032260 -66632093 + MIR3 SINE MIR 2 101 -107 541 306 120 16 chr1 176032556 176032798 -66631555 + L2 LINE L2 2806 3072 -241 261 204 23 11 chr1 176032811 176032899 -66631454 + (CA)n Simple_repeat Simple_repeat 2 90 0 600 231 75 38 chr1 176032936 176033122 -66631231 + L2 LINE L2 3100 3292 -21 1230 140 20 113 chr1 176033122 176033181 -66631172 - L1MB8 LINE L1 -13 6165 6102 1127 164 186 74 chr1 176033181 176033450 -66630903 - AluJo SINE Alu -3 299 1 1230 140 20 113 chr1 176033450 176033472 -66630881 - L1MB8 LINE L1 -76 6102 6080 1271 150 100 133 chr1 176033472 176033832 -66630521 + MER7A DNA MER2_type 1 346 0 1230 140 20 113 chr1 176033832 176034049 -66630304 - L1MB8 LINE L1 -98 6080 5894 256 264 74 134 chr1 176034749 176035181 -66629172 - L3 LINE CR1 -15 1562 1157 1780 156 60 0 chr1 176035411 176035694 -66628659 + AluSx SINE Alu 5 304 -8 344 176 0 14 chr1 176035696 176035770 -66628583 + GA-rich Low_complexity Low_complexity 4 76 0 1305 163 87 73 chr1 176035922 176036222 -66628131 - AluJo SINE Alu -8 304 1 806 153 65 0 chr1 176036751 176036875 -66627478 + AluSq/x SINE Alu 2 133 -180 4330 174 40 12 chr1 176037012 176037841 -66626512 - L1MA8 LINE L1 -2 6289 5438 4344 153 26 8 chr1 176037943 176038978 -66625375 - L1MB8 LINE L1 -683 5629 4579 614 230 75 6 chr1 176038979 176039030 -66625323 + MIR SINE MIR 62 108 -154 1537 119 33 20 chr1 176039030 176039274 -66625079 - L1PA8 LINE L1 -2 6170 5924 614 230 75 6 chr1 176039274 176039396 -66624957 + MIR SINE MIR 108 247 -15 349 257 79 10 chr1 176040675 176040776 -66623577 - L2 LINE L2 0 3272 3165 240 244 0 146 chr1 176041251 176041374 -66622979 + MER102b DNA MER1_type 233 337 -4 2068 105 3 20 chr1 176042734 176043039 -66621314 - L1PA13 LINE L1 -239 5929 5630 1921 57 28 0 chr1 176043015 176043263 -66621090 + L1PA13 LINE L1 5909 6163 0 * 282 272 96 7 chr1 176044012 176044148 -66620205 + L3 LINE CR1 1117 1264 -313 821 259 108 4 chr1 176044696 176044928 -66619425 + MIR SINE MIR 7 262 0 567 262 146 12 chr1 176044941 176045105 -66619248 - MER5A DNA MER1_type 0 189 4 221 302 172 65 chr1 176045122 176045276 -66619077 + L3 LINE CR1 1272 1447 -130 846 193 122 39 chr1 176045276 176045475 -66618878 - ORSL DNA AcHobo 0 275 49 1907 100 4 0 chr1 176045475 176045725 -66618628 - AluY SINE Alu -16 295 45 846 193 122 39 chr1 176045725 176045779 -66618574 - ORSL DNA AcHobo -226 49 1 221 302 172 65 chr1 176045779 176045793 -66618560 + L3 LINE CR1 1447 1458 -119 1874 142 32 26 chr1 176046059 176046369 -66617984 + AluJb SINE Alu 1 312 0 2297 116 0 0 chr1 176046573 176046874 -66617479 + AluSx SINE Alu 1 301 -11 264 323 133 6 chr1 176046977 176047135 -66617218 + MER5B DNA MER1_type 1 178 0 210 354 89 6 chr1 176047162 176047320 -66617033 - L2 LINE L2 -1293 2021 1851 1320 159 14 5 chr1 176047422 176047636 -66616717 + L1PB4 LINE L1 5935 6150 -6 2271 101 0 0 chr1 176047737 176048034 -66616319 + AluSg SINE Alu 1 297 -13 1382 196 29 0 chr1 176048035 176048310 -66616043 + Charlie4a DNA MER1_type 35 317 -191 2015 135 0 0 chr1 176048316 176048651 -66615702 + AluSx SINE Alu 1 335 0 22 35 0 0 chr1 176049184 176049213 -66615140 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 176049259 176049281 -66615072 + AT_rich Low_complexity Low_complexity 1 22 0 439 299 134 37 chr1 176049388 176049575 -66614778 + MIR SINE MIR 8 212 -50 1002 198 181 75 chr1 176049789 176050204 -66614149 + L1MC4 LINE L1 7460 7918 -124 3492 103 0 0 chr1 176050604 176051058 -66613295 - MER61E LTR ERV1 -115 454 1 657 210 21 14 chr1 176051417 176051560 -66612793 - LTR45 LTR ERV1 0 525 382 237 163 23 0 chr1 176051579 176051622 -66612731 - MER5A DNA MER1_type -121 68 25 291 202 252 42 chr1 176051632 176051751 -66612602 - LTR45 LTR ERV1 -381 144 1 21 0 0 0 chr1 176051788 176051809 -66612544 + AT_rich Low_complexity Low_complexity 1 21 0 237 228 35 18 chr1 176052285 176052342 -66612011 + LTR33A LTR ERVL 463 520 -3 389 288 21 84 chr1 176052969 176053160 -66611193 - MIR SINE MIR -75 187 9 437 261 94 108 chr1 176054615 176055051 -66609302 - MLT1J2 LTR MaLR -16 434 1 230 145 16 137 chr1 176055086 176055210 -66609143 - Charlie7 DNA MER1_type -75 2537 2429 581 324 114 16 chr1 176055354 176055740 -66608613 + L2 LINE L2 2380 2803 -511 702 248 126 9 chr1 176056935 176057165 -66607188 + MIR SINE MIR 6 262 0 1259 120 0 16 chr1 176057308 176057491 -66606862 + AluSg/x SINE Alu 114 293 -19 1846 103 4 4 chr1 176057785 176058069 -66606284 + AluSg SINE Alu 30 313 0 589 274 62 34 chr1 176058396 176058604 -66605749 + MIR SINE MIR 49 262 0 274 375 25 67 chr1 176058602 176058801 -66605552 + L2 LINE L2 3001 3186 -86 * 2205 119 0 0 chr1 176058801 176059096 -66605257 - AluSx SINE Alu -17 295 1 274 375 25 67 chr1 176059096 176059179 -66605174 + L2 LINE L2 3186 3271 -1 2276 85 3 0 chr1 176059861 176060178 -66604175 + AluSp SINE Alu 1 318 0 530 191 219 51 chr1 176060538 176060716 -66603637 - MER63A DNA MER1_type -2 208 1 2098 122 20 0 chr1 176062009 176062312 -66602041 + AluSx SINE Alu 1 309 -3 506 290 55 30 chr1 176062512 176062712 -66601641 + LTR67 LTR ERVL 353 557 0 295 357 45 0 chr1 176062723 176062835 -66601518 - MIR SINE MIR -125 137 21 388 168 84 42 chr1 176063411 176063506 -66600847 + MLT1J LTR MaLR 313 470 -35 2936 163 25 10 chr1 176063621 176064101 -66600252 + LTR42 LTR ERVL 9 495 0 515 256 35 55 chr1 176064133 176064422 -66599931 - L1MEd LINE L1 -5014 1105 823 1374 169 22 37 chr1 176064426 176064759 -66599594 + MLT1A1 LTR MaLR 6 365 0 316 256 90 39 chr1 176064759 176064915 -66599438 - L1MEd LINE L1 -5291 828 665 424 323 52 78 chr1 176065077 176065231 -66599122 - L1MEd LINE L1 -5657 462 306 912 183 16 26 chr1 176065231 176065422 -66598931 - MER53 DNA DNA 0 189 1 424 323 52 78 chr1 176065422 176065621 -66598732 - L1MEd LINE L1 -5813 306 103 1744 175 3 3 chr1 176065621 176065906 -66598447 + AluSx SINE Alu 1 285 -27 194 62 31 0 chr1 176065909 176065941 -66598412 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 424 323 52 78 chr1 176065941 176066046 -66598307 - L1MEd LINE L1 -6018 101 11 995 270 84 18 chr1 176067447 176067840 -66596513 - L1ME4a LINE L1 -190 5931 5513 366 275 28 51 chr1 176068363 176068541 -66595812 + L2 LINE L2 3127 3300 -13 6866 141 75 10 chr1 176068774 176069390 -66594963 - Tigger3b DNA MER2_type -1798 1230 655 207 0 0 0 chr1 176069390 176069413 -66594940 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6866 141 75 10 chr1 176069413 176069951 -66594402 - Tigger3b DNA MER2_type -2373 655 1 222 260 0 55 chr1 176070114 176070187 -66594166 + MIR SINE MIR 73 141 -121 397 371 18 12 chr1 176071016 176071186 -66593167 - L2 LINE L2 0 3272 3102 1792 117 57 30 chr1 176073354 176073653 -66590700 + AluSc SINE Alu 3 309 0 1720 143 71 75 chr1 176074840 176074982 -66589371 + L1MB7 LINE L1 5761 5902 -282 1527 198 18 11 chr1 176074982 176075265 -66589088 + AluJb SINE Alu 1 285 -27 234 0 0 0 chr1 176075265 176075291 -66589062 + (CA)n Simple_repeat Simple_repeat 2 27 0 1720 143 71 75 chr1 176075291 176075353 -66589000 + L1MB7 LINE L1 5901 5962 -222 1974 108 87 0 chr1 176075353 176075640 -66588713 + AluSp SINE Alu 1 312 -1 1720 143 71 75 chr1 176075640 176075858 -66588495 + L1MB7 LINE L1 5962 6183 -1 234 317 57 24 chr1 176076508 176076631 -66587722 + MLT1K LTR MaLR 65 191 -397 297 0 0 0 chr1 176077080 176077113 -66587240 + (CA)n Simple_repeat Simple_repeat 1 33 0 318 215 62 0 chr1 176077369 176077434 -66586919 + LTR16B LTR ERVL 394 462 -2 208 147 0 0 chr1 176077718 176077752 -66586601 + (T)n Simple_repeat Simple_repeat 1 34 0 402 205 129 144 chr1 176077757 176078020 -66586333 + MIR SINE MIR 3 261 -1 331 305 141 62 chr1 176078606 176079137 -66585216 - L1M2 LINE L1 -5525 1324 752 2235 57 4 0 chr1 176079766 176080095 -66584258 - AluSq SINE Alu 0 330 1 984 244 23 5 chr1 176081280 176081501 -66582852 - MIR SINE MIR -22 240 16 187 271 17 0 chr1 176081536 176081595 -66582758 - L2 LINE L2 -963 2351 2292 251 325 12 0 chr1 176082369 176082449 -66581904 - MIR SINE MIR -180 82 2 1033 211 139 0 chr1 176082957 176083166 -66581187 - MER8 DNA MER2_type 0 239 2 254 289 41 10 chr1 176084418 176084515 -66579838 + MIR SINE MIR 124 223 -39 186 43 0 0 chr1 176085319 176085342 -66579011 + (A)n Simple_repeat Simple_repeat 1 23 0 411 280 26 83 chr1 176085775 176085906 -66578447 + MIR3 SINE MIR 4 122 -86 2253 104 0 3 chr1 176085906 176086203 -66578150 + AluSc SINE Alu 1 296 -13 411 280 26 83 chr1 176086203 176086264 -66578089 + MIR3 SINE MIR 122 185 -23 229 290 14 0 chr1 176086344 176086413 -66577940 + L2 LINE L2 2662 2731 -583 330 243 235 7 chr1 176086459 176086595 -66577758 + MER5A DNA MER1_type 16 182 -7 321 288 94 35 chr1 176087149 176087319 -66577034 - MIR SINE MIR -10 252 73 2084 114 24 0 chr1 176087385 176087674 -66576679 - AluSx SINE Alu -11 301 6 22 35 0 0 chr1 176088739 176088768 -66575585 + AT_rich Low_complexity Low_complexity 1 29 0 934 169 0 0 chr1 176088771 176088901 -66575452 + FLAM_A SINE Alu 4 133 0 2284 120 0 3 chr1 176089305 176089613 -66574740 + AluJb SINE Alu 1 307 -5 2132 119 10 10 chr1 176089878 176090181 -66574172 - AluSx SINE Alu -8 304 2 1682 157 49 7 chr1 176090432 176090718 -66573635 + AluJo SINE Alu 1 298 -14 301 237 216 36 chr1 176091684 176091823 -66572530 - MER5A DNA MER1_type -1 188 25 267 186 23 0 chr1 176092108 176092151 -66572202 + Alu SINE Alu 1 44 -258 263 283 94 22 chr1 176092810 176092948 -66571405 - MIR SINE MIR -50 212 65 2027 133 10 10 chr1 176092985 176093293 -66571060 - AluSx SINE Alu -4 308 1 2280 108 0 3 chr1 176094013 176094320 -66570033 + AluSq SINE Alu 1 306 -7 194 236 100 73 chr1 176094384 176094494 -66569859 + MIR SINE MIR 102 214 -48 2240 111 10 0 chr1 176095697 176096003 -66568350 - AluY SINE Alu -2 309 1 230 346 135 10 chr1 176096033 176096137 -66568216 - L2 LINE L2 -33 3239 3123 2464 60 0 47 chr1 176096460 176096778 -66567575 + AluY SINE Alu 1 303 -8 628 258 75 0 chr1 176096904 176097063 -66567290 + MIR SINE MIR 23 193 -69 362 294 67 67 chr1 176097199 176097526 -66566827 - L2 LINE L2 -1372 1942 1616 1830 166 0 16 chr1 176097538 176097845 -66566508 + AluJo SINE Alu 1 302 -10 229 219 188 0 chr1 176097958 176098022 -66566331 + Tigger5 DNA MER2_type 2242 2317 -6 2176 123 0 3 chr1 176098122 176098423 -66565930 + AluSx SINE Alu 1 300 -12 202 195 0 0 chr1 176098876 176098917 -66565436 + L2 LINE L2 2694 2734 -580 788 314 48 4 chr1 176099605 176099853 -66564500 - MIR SINE MIR 0 262 4 1835 169 3 10 chr1 176100086 176100394 -66563959 - AluJb SINE Alu -6 306 1 291 320 108 54 chr1 176101368 176101702 -66562651 - L2 LINE L2 -1899 1415 1064 2186 84 0 0 chr1 176101772 176102035 -66562318 + AluSg SINE Alu 35 297 -13 331 278 78 0 chr1 176102937 176103052 -66561301 - L2 LINE L2 -11 3261 3138 1734 167 13 20 chr1 176104469 176104769 -66559584 - AluJo SINE Alu -14 298 1 239 279 29 29 chr1 176105972 176106040 -66558313 + L2 LINE L2 3155 3222 -50 3854 197 50 27 chr1 176106218 176107020 -66557333 - MER21B LTR ERV1 -1 862 43 429 211 0 0 chr1 176107023 176107094 -66557259 - MER21B LTR ERV1 -774 89 19 338 230 70 10 chr1 176107092 176107192 -66557161 - MER21B LTR ERV1 -757 106 1 * 2447 111 111 8 chr1 176108202 176108590 -66555763 - MSTA LTR MaLR 0 428 1 223 313 62 0 chr1 176109233 176109313 -66555040 + MIR SINE MIR 158 242 -20 1163 113 0 12 chr1 176110585 176110745 -66553608 - FRAM SINE Alu -21 155 1 659 259 77 24 chr1 176111800 176112047 -66552306 + L1MC4a LINE L1 5655 5914 -1894 1382 197 149 64 chr1 176112078 176112225 -66552128 - Charlie2 DNA MER1_type -467 2395 2262 2407 85 0 0 chr1 176112225 176112530 -66551823 + AluY SINE Alu 1 305 -6 1382 197 149 64 chr1 176112530 176112864 -66551489 - Charlie2 DNA MER1_type -600 2262 1873 687 263 22 36 chr1 176112948 176113172 -66551181 - Charlie2 DNA MER1_type -2641 221 1 1980 115 55 30 chr1 176114509 176114839 -66549514 - MER44D DNA MER2_type -1 608 1 318 212 147 73 chr1 176115067 176115312 -66549041 - L1MEd LINE L1 -4892 1227 965 301 236 39 31 chr1 176115501 176115628 -66548725 - L1MEd LINE L1 -5396 723 596 2459 78 3 0 chr1 176118237 176118544 -66545809 + AluSc SINE Alu 1 308 -1 2326 54 32 0 chr1 176118823 176119103 -66545250 + AluY SINE Alu 2 290 -21 2492 94 53 11 chr1 176120337 176120697 -66543656 - THE1C LTR MaLR 0 375 1 372 401 38 14 chr1 176120946 176121235 -66543118 - L2 LINE L2 -213 3100 2805 652 174 16 25 chr1 176121706 176121827 -66542526 - AluSq/x SINE Alu -182 131 12 259 331 48 16 chr1 176121860 176121984 -66542369 - L1MEd LINE L1 -5398 721 594 417 293 89 94 chr1 176122042 176122479 -66541874 - L1MEd LINE L1 -5653 466 32 825 160 0 0 chr1 176122774 176122899 -66541454 + FLAM_C SINE Alu 9 133 -10 2340 113 9 12 chr1 176123485 176123822 -66540531 - MER1B DNA MER1_type 0 337 2 920 189 22 22 chr1 176123879 176124064 -66540289 - MLT1A2 LTR MaLR -189 185 1 2128 126 0 26 chr1 176124913 176125223 -66539130 - AluSx SINE Alu -10 302 1 2022 136 116 0 chr1 176125223 176125621 -66538732 - L1 LINE L1 -2403 3743 3300 1644 58 44 174 chr1 176126196 176126540 -66537813 - AluSx SINE Alu -3 299 1 288 291 0 12 chr1 176126603 176126689 -66537664 - MIR SINE MIR -17 245 161 23 33 0 0 chr1 176127192 176127222 -66537131 + GC_rich Low_complexity Low_complexity 1 30 0 256 285 161 8 chr1 176127811 176127941 -66536412 - L2 LINE L2 -639 2675 2526 388 287 71 87 chr1 176127948 176128008 -66536345 + MIR SINE MIR 9 68 -194 2360 64 7 0 chr1 176128008 176128306 -66536047 - AluSc SINE Alu -9 300 1 388 287 71 87 chr1 176128306 176128499 -66535854 + MIR SINE MIR 68 258 -4 326 261 98 82 chr1 176128512 176128719 -66535634 - L2 LINE L2 -843 2471 2256 2264 80 3 0 chr1 176128719 176129019 -66535334 + AluY SINE Alu 1 301 -10 326 261 98 82 chr1 176129019 176129117 -66535236 - L2 LINE L2 -1058 2256 2161 355 252 133 40 chr1 176129772 176129923 -66534430 + MIR SINE MIR 46 210 -52 263 162 191 0 chr1 176129961 176130029 -66534324 - L1ME4a LINE L1 -71 6050 5970 23 0 0 0 chr1 176130862 176130885 -66533468 + AT_rich Low_complexity Low_complexity 1 23 0 821 217 7 0 chr1 176131526 176131669 -66532684 - AluJo/FRAM SINE Alu -32 280 137 1905 118 38 14 chr1 176131672 176131960 -66532393 - AluSx SINE Alu -17 295 1 380 259 46 19 chr1 176132133 176132241 -66532112 - AluJo SINE Alu -85 217 107 1802 117 99 3 chr1 176132242 176132525 -66531828 - AluSg SINE Alu 0 310 1 1145 103 0 0 chr1 176132525 176132671 -66531682 - AluSq/x SINE Alu -166 146 1 276 259 0 0 chr1 176132861 176132919 -66531434 + MIR3 SINE MIR 124 181 -27 461 183 70 0 chr1 176133003 176133118 -66531235 - L1ME LINE L1 -4559 1521 1399 3447 196 69 24 chr1 176133135 176133944 -66530409 - MER21B LTR ERV1 0 863 18 2177 91 14 0 chr1 176133945 176134241 -66530112 - AluSp SINE Alu -13 300 1 1935 238 86 78 chr1 176134255 176135061 -66529292 - L1ME LINE L1 -4797 1283 562 218 56 28 0 chr1 176135061 176135097 -66529256 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1935 238 86 78 chr1 176135097 176135654 -66528699 - L1ME LINE L1 -5518 562 11 627 279 72 57 chr1 176135724 176135942 -66528411 + L2 LINE L2 2840 3053 -260 948 195 73 5 chr1 176135942 176136147 -66528206 + MER20 DNA MER1_type 1 219 0 627 279 72 57 chr1 176136147 176136302 -66528051 + L2 LINE L2 3053 3313 0 2375 159 19 10 chr1 176136364 176136779 -66527574 - MSTA LTR MaLR -2 426 8 416 229 149 28 chr1 176136952 176137201 -66527152 - L1MC5 LINE L1 -74 7887 7609 491 248 108 0 chr1 176137204 176137361 -66526992 + MER20 DNA MER1_type 42 215 -4 278 244 89 39 chr1 176137390 176137570 -66526783 - L1MC/D LINE L1 -2365 5443 5255 317 85 0 0 chr1 176137976 176138023 -66526330 + Alu SINE Alu 250 296 -6 1250 171 18 18 chr1 176138024 176138246 -66526107 + AluJo SINE Alu 6 227 -85 300 231 0 13 chr1 176138604 176138682 -66525671 - MER46C DNA MER2_type -8 330 254 319 250 25 58 chr1 176138753 176138873 -66525480 + L1M4 LINE L1 3874 3989 -2157 303 214 165 0 chr1 176138906 176139009 -66525344 + MER5C DNA MER1_type 6 125 -199 205 244 0 0 chr1 176139031 176139072 -66525281 + MER5C DNA MER1_type 284 324 0 299 254 0 0 chr1 176139684 176139751 -66524602 + MER6B DNA MER2_type 54 120 -156 * 301 193 0 0 chr1 176139748 176139805 -66524548 - MER6B DNA MER2_type -219 57 1 2068 130 7 0 chr1 176139924 176140209 -66524144 - AluSx SINE Alu -25 287 1 2169 86 10 3 chr1 176143839 176144131 -66520222 - AluY SINE Alu -17 294 1 402 247 0 0 chr1 176144395 176144480 -66519873 + MER58A DNA MER1_type 5 89 -18 640 194 0 8 chr1 176144581 176144705 -66519648 + MER58A DNA MER1_type 102 224 0 2165 105 24 0 chr1 176146592 176146887 -66517466 - AluSg SINE Alu -8 302 1 523 277 68 68 chr1 176147519 176147754 -66516599 - MIR SINE MIR -21 241 7 22 88 0 0 chr1 176148097 176148154 -66516199 + AT_rich Low_complexity Low_complexity 1 57 0 205 189 0 0 chr1 176148478 176148515 -66515838 + CT-rich Low_complexity Low_complexity 2 38 0 256 343 176 19 chr1 176148756 176149120 -66515233 - L3 LINE CR1 -221 1356 936 2204 123 0 0 chr1 176152094 176152395 -66511958 - AluSx SINE Alu -11 301 1 769 154 45 45 chr1 176152698 176152854 -66511499 - MER21B LTR ERV1 -707 156 1 563 236 50 11 chr1 176152856 176153055 -66511298 + L1ME2 LINE L1 5787 5992 -193 22 0 0 0 chr1 176153132 176153154 -66511199 + AT_rich Low_complexity Low_complexity 1 22 0 1795 103 16 8 chr1 176153213 176153466 -66510887 - AluSq SINE Alu -16 297 43 473 153 0 0 chr1 176153834 176153906 -66510447 + AluS SINE Alu 1 72 -240 297 298 0 0 chr1 176153957 176154135 -66510218 + (TCCGG)n Simple_repeat Simple_repeat 3 180 0 351 260 0 0 chr1 176154175 176154325 -66510028 + (GTCTG)n Simple_repeat Simple_repeat 2 151 0 1609 140 53 4 chr1 176154326 176154591 -66509762 - AluSq SINE Alu -35 278 1 328 303 76 25 chr1 176154646 176155135 -66509218 + L1M4 LINE L1 4228 4775 -1371 238 274 26 18 chr1 176155250 176155363 -66508990 + L1P LINE L1 4902 5015 -1131 21 0 0 0 chr1 176155400 176155421 -66508932 + AT_rich Low_complexity Low_complexity 1 21 0 450 69 0 0 chr1 176155533 176155591 -66508762 + AluS SINE Alu 45 102 -211 1626 137 4 0 chr1 176155591 176155824 -66508529 - AluSp SINE Alu -79 234 1 1787 172 0 7 chr1 176156677 176156974 -66507379 - AluJb SINE Alu -17 295 1 3276 209 70 14 chr1 176157156 176158065 -66506288 + L1MC3 LINE L1 6370 7329 -456 210 147 0 0 chr1 176158640 176158674 -66505679 + (ATG)n Simple_repeat Simple_repeat 1 34 0 419 219 195 8 chr1 176158996 176159119 -66505234 + MER5A DNA MER1_type 41 186 -3 244 273 13 13 chr1 176161412 176161489 -66502864 - MIR SINE MIR -30 232 156 220 311 84 42 chr1 176162056 176162175 -66502178 + MIR SINE MIR 19 142 -66 676 211 64 0 chr1 176162178 176162334 -66502019 + MIR SINE MIR 97 262 0 962 147 53 32 chr1 176162342 176162532 -66501821 - MER46A DNA MER2_type 0 236 43 1603 143 12 0 chr1 176163447 176163692 -66500661 - AluSx SINE Alu -15 297 50 2500 44 7 0 chr1 176165227 176165523 -66498830 + AluY SINE Alu 1 298 -13 6405 56 11 86 chr1 176166742 176167775 -66496578 + SVA Other Other 432 1386 0 651 251 150 5 chr1 176167820 176168007 -66496346 + MIR SINE MIR 49 262 0 186 283 121 10 chr1 176169223 176169322 -66495031 - MIR3 SINE MIR -7 201 92 23 54 0 0 chr1 176169856 176169893 -66494460 + AT_rich Low_complexity Low_complexity 1 37 0 359 299 96 13 chr1 176169919 176170076 -66494277 - MIR SINE MIR -8 254 85 949 266 37 30 chr1 176170230 176170527 -66493826 - MLT1E LTR MaLR -2 591 293 2793 105 6 6 chr1 176170603 176170965 -66493388 - THE1B LTR MaLR -2 362 1 24 32 0 0 chr1 176171009 176171040 -66493313 + AT_rich Low_complexity Low_complexity 1 31 0 1430 205 112 31 chr1 176171040 176171425 -66492928 + MLT1D LTR MaLR 90 505 0 578 222 88 65 chr1 176171429 176171645 -66492708 - MLT1E LTR MaLR -280 287 67 445 330 11 17 chr1 176171759 176171935 -66492418 + MER5A DNA MER1_type 1 175 -14 273 250 25 0 chr1 176172069 176172149 -66492204 - MER113 DNA MER1_type? 0 521 440 * 758 241 22 31 chr1 176172147 176172375 -66491978 - MER113 DNA MER1_type? -295 226 1 1558 187 16 10 chr1 176173165 176173475 -66490878 + MER33 DNA MER1_type 1 312 -12 2267 87 3 0 chr1 176174108 176174396 -66489957 + AluSq SINE Alu 1 289 -24 378 0 0 0 chr1 176174411 176174453 -66489900 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 286 280 13 0 chr1 176175901 176175976 -66488377 - L2 LINE L2 0 3313 3238 279 54 0 0 chr1 176176022 176176059 -66488294 + (TG)n Simple_repeat Simple_repeat 1 37 0 288 120 0 0 chr1 176176059 176176109 -66488244 + (GA)n Simple_repeat Simple_repeat 2 51 0 249 318 87 40 chr1 176176216 176176389 -66487964 + L2 LINE L2 2491 2671 -643 205 393 104 12 chr1 176177375 176177548 -66486805 + MER5A DNA MER1_type 1 189 0 2013 143 0 0 chr1 176177601 176177901 -66486452 - AluSq SINE Alu -13 300 1 362 265 24 85 chr1 176179267 176179306 -66485047 - HAL1 LINE L1 -85 2422 2382 769 138 0 55 chr1 176179306 176179451 -66484902 - L1PA8 LINE L1 -2 6170 6034 362 265 24 85 chr1 176179451 176179622 -66484731 - HAL1 LINE L1 -125 2382 2225 30 27 0 0 chr1 176180609 176180646 -66483707 + AT_rich Low_complexity Low_complexity 1 37 0 1144 208 33 8 chr1 176180936 176181176 -66483177 - MIR SINE MIR -2 260 15 2184 125 3 0 chr1 176181645 176181940 -66482413 - AluSp SINE Alu -17 296 1 892 204 201 22 chr1 176183057 176183371 -66480982 + LTR54B LTR ERV1 17 386 -112 412 190 0 25 chr1 176183373 176183452 -66480901 + MER57A-int LTR ERV1 7437 7513 -24 2479 80 0 0 chr1 176183471 176183782 -66480571 + AluSx SINE Alu 1 311 -1 1249 160 86 31 chr1 176183782 176184038 -66480315 + MER57A LTR ERV1 4 273 -130 335 25 0 0 chr1 176184041 176184081 -66480272 - MLT2A2 LTR ERVL 0 453 414 414 0 0 0 chr1 176184081 176184127 -66480226 + (TA)n Simple_repeat Simple_repeat 2 47 0 1624 81 0 27 chr1 176184127 176184350 -66480003 - MLT2A2 LTR ERVL -236 217 1 685 178 47 0 chr1 176184350 176184476 -66479877 + MER57A LTR ERV1 272 403 0 1518 210 43 124 chr1 176184606 176185162 -66479191 + MLT1F LTR MaLR 1 511 -31 1210 193 47 145 chr1 176185166 176185302 -66479051 + MLT1C LTR MaLR 5 153 -237 2290 63 0 7 chr1 176185302 176185634 -66478719 - AluY SINE Alu 0 330 1 1210 193 47 145 chr1 176185634 176186001 -66478352 + MLT1C LTR MaLR 153 390 0 2209 256 111 25 chr1 176186032 176186764 -66477589 - MER69 DNA AcHobo -1493 1033 239 476 285 87 72 chr1 176186771 176187048 -66477305 + MLT1K LTR MaLR 277 557 -31 345 241 72 0 chr1 176187051 176187134 -66477219 + L2 LINE L2 3225 3313 0 316 269 0 43 chr1 176187236 176187329 -66477024 - L1MC4 LINE L1 -1339 6703 6615 * 324 258 0 43 chr1 176187249 176187342 -66477011 + L1MC4 LINE L1 6615 6703 -1339 237 152 0 0 chr1 176187376 176187422 -66476931 - LTR66 LTR ERVL -171 439 394 225 174 0 0 chr1 176187440 176187486 -66476867 - LTR66 LTR ERVL -171 439 394 1378 182 111 4 chr1 176188600 176188880 -66475473 + AluJb SINE Alu 1 310 -2 24 0 0 0 chr1 176189515 176189539 -66474814 + AT_rich Low_complexity Low_complexity 1 24 0 610 292 43 53 chr1 176190467 176190748 -66473605 - L2 LINE L2 -1 3312 3035 234 325 108 0 chr1 176191272 176191429 -66472924 - MIR SINE MIR -16 246 73 197 138 0 0 chr1 176191548 176191577 -66472776 - MIR SINE MIR -187 75 47 521 291 22 16 chr1 176191584 176191766 -66472587 + MIR SINE MIR 6 188 -74 1220 202 107 35 chr1 176191774 176191903 -66472450 - MER2 DNA MER2_type 0 345 227 2014 150 3 3 chr1 176191903 176192210 -66472143 + AluSx SINE Alu 1 307 -5 1220 202 107 35 chr1 176192210 176192397 -66471956 - MER2 DNA MER2_type -118 227 6 263 294 96 20 chr1 176192499 176192645 -66471708 + MLT1L LTR MaLR 1 157 -458 712 276 58 11 chr1 176192648 176192822 -66471531 + MER5A DNA MER1_type 6 187 -2 707 292 148 34 chr1 176192822 176193240 -66471113 + MLT1L LTR MaLR 146 611 -4 610 330 64 27 chr1 176193898 176194228 -66470125 - L2 LINE L2 0 3313 2972 230 343 0 0 chr1 176194240 176194307 -66470046 - L2 LINE L2 -213 3059 2993 280 254 39 55 chr1 176194313 176194494 -66469859 + L1ME4a LINE L1 5944 6121 0 2304 119 0 0 chr1 176194845 176195157 -66469196 + AluSx SINE Alu 1 312 0 313 242 145 16 chr1 176196218 176196342 -66468011 + MIR SINE MIR 114 253 -9 2592 177 15 7 chr1 176197726 176198184 -66466169 - LTR53 LTR ERVL 0 519 58 270 167 0 0 chr1 176198403 176198445 -66465908 + LTR67 LTR ERVL 511 552 -5 503 243 29 15 chr1 176198450 176198586 -66465767 - MIR SINE MIR -72 190 53 206 303 0 28 chr1 176199191 176199300 -66465053 + A-rich Low_complexity Low_complexity 3 108 0 568 269 105 42 chr1 176200147 176200338 -66464015 + MIR SINE MIR 7 218 -44 2220 64 8 0 chr1 176200338 176200635 -66463718 + AluY SINE Alu 16 314 0 568 269 105 42 chr1 176200635 176200680 -66463673 + MIR SINE MIR 218 259 -3 1968 106 4 4 chr1 176201146 176201421 -66462932 - AluSq SINE Alu -6 307 33 2241 116 3 0 chr1 176201913 176202214 -66462139 + AluSq SINE Alu 1 302 -11 1724 181 0 19 chr1 176202390 176202705 -66461648 + AluJb SINE Alu 1 309 -3 1646 194 92 12 chr1 176203158 176203608 -66460745 + MLT2B1 LTR ERVL 13 546 -8 214 309 66 29 chr1 176204656 176204792 -66459561 + L2 LINE L2 3171 3311 -2 183 326 23 70 chr1 176205566 176205652 -66458701 + L2 LINE L2 3191 3272 0 4628 105 84 1 chr1 176206137 176206854 -66457499 - L1PA16 LINE L1 -9 6157 5382 258 353 35 26 chr1 176207724 176207840 -66456513 + MIR SINE MIR 23 139 -69 689 244 211 0 chr1 176210174 176210383 -66453970 - MIR SINE MIR 0 262 10 302 241 35 11 chr1 176210930 176211017 -66453336 - HsTC2 DNA Tc2 -1807 91 3 1439 230 67 67 chr1 176211429 176211969 -66452384 + MLT1H LTR MaLR 1 540 -9 1791 139 34 4 chr1 176212029 176212295 -66452058 + AluSx SINE Alu 1 274 -38 240 35 0 0 chr1 176212339 176212368 -66451985 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 183 309 40 79 chr1 176212535 176212661 -66451692 + L2 LINE L2 3193 3313 0 737 198 0 0 chr1 176213058 176213174 -66451179 + FLAM_A SINE Alu 1 116 -17 2208 114 0 3 chr1 176213855 176214154 -66450199 - AluSx SINE Alu -14 298 1 7404 168 16 23 chr1 176214533 176216376 -66447977 - L1PA15 LINE L1 0 6165 4349 2154 114 3 0 chr1 176216376 176216674 -66447679 + AluSg SINE Alu 2 300 -10 7404 168 16 23 chr1 176216674 176217267 -66447086 - L1PA15 LINE L1 -1816 4349 3753 699 284 96 62 chr1 176217415 176217946 -66446407 - MLT1H LTR MaLR 0 549 1 481 319 7 0 chr1 176218045 176218186 -66446167 - MIR3 SINE MIR 0 208 67 344 328 8 23 chr1 176218279 176218410 -66445943 - L2 LINE L2 -62 3210 3082 802 256 10 20 chr1 176218473 176218668 -66445685 - MIR SINE MIR -49 213 21 489 62 0 0 chr1 176219369 176219434 -66444919 + (TG)n Simple_repeat Simple_repeat 1 65 0 1975 246 85 22 chr1 176219621 176220198 -66444155 - MLT1E2 LTR MaLR 0 626 14 204 194 14 28 chr1 176220215 176220287 -66444066 + CT-rich Low_complexity Low_complexity 3 73 0 246 81 0 0 chr1 176220299 176220336 -66444017 + (GA)n Simple_repeat Simple_repeat 1 37 0 259 355 54 0 chr1 176220352 176220445 -66443908 - L2 LINE L2 -32 3240 3143 280 252 159 19 chr1 176220915 176221022 -66443331 - L2 LINE L2 0 3272 3151 369 259 25 0 chr1 176221270 176221351 -66443002 + MER5A DNA MER1_type 1 83 -106 576 219 0 16 chr1 176221355 176221478 -66442875 + FLAM_A SINE Alu 20 140 -2 651 238 8 0 chr1 176221479 176221605 -66442748 + MER5A DNA MER1_type 63 189 0 316 324 154 47 chr1 176221661 176222389 -66441964 + L2 LINE L2 1933 2738 -576 331 305 87 96 chr1 176222443 176222869 -66441484 + L2 LINE L2 2843 3264 -8 207 0 0 0 chr1 176225027 176225050 -66439303 + (T)n Simple_repeat Simple_repeat 1 23 0 231 219 126 87 chr1 176225913 176226101 -66438252 + MIR3 SINE MIR 4 191 -63 281 301 133 30 chr1 176227613 176227779 -66436574 - MIR SINE MIR -56 206 24 232 303 13 13 chr1 176227867 176227943 -66436410 - L2 LINE L2 -10 3262 3187 435 315 122 90 chr1 176227986 176228034 -66436319 - L2 LINE L2 -40 3232 3187 189 0 0 0 chr1 176228034 176228055 -66436298 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 435 315 122 90 chr1 176228055 176229818 -66434535 - L2 LINE L2 -85 3187 1362 211 234 78 16 chr1 176230089 176230153 -66434200 + MIR SINE MIR 41 108 -100 916 231 190 17 chr1 176230397 176230744 -66433609 - L1MC5 LINE L1 -52 7909 7503 441 338 14 28 chr1 176231338 176231576 -66432777 - MIR SINE MIR -26 236 6 240 307 13 13 chr1 176231866 176231941 -66432412 - MIR SINE MIR -118 90 16 191 282 154 36 chr1 176232724 176232834 -66431519 - L2 LINE L2 -8 3264 3142 180 77 0 0 chr1 176233449 176233475 -66430878 + (TTAGGG)n Simple_repeat Simple_repeat 6 31 0 191 324 9 36 chr1 176233818 176233929 -66430424 - MIR SINE MIR -78 130 23 515 263 24 31 chr1 176234580 176234795 -66429558 + MIR SINE MIR 16 258 -4 433 244 44 98 chr1 176235216 176235441 -66428912 + MIR SINE MIR 4 216 -46 940 148 118 6 chr1 176235622 176235791 -66428562 - MER5A DNA MER1_type 0 189 2 182 150 25 0 chr1 176236829 176236869 -66427484 + (TG)n Simple_repeat Simple_repeat 1 41 0 24 32 0 0 chr1 176237929 176237960 -66426393 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 176237998 176238019 -66426334 + AT_rich Low_complexity Low_complexity 1 21 0 243 270 108 0 chr1 176240185 176240259 -66424094 + L3 LINE CR1 1476 1557 -20 1095 172 67 0 chr1 176240467 176240676 -66423677 - MER58A DNA MER1_type -1 223 1 853 155 0 0 chr1 176240697 176240826 -66423527 + FLAM_A SINE Alu 1 129 -4 299 320 72 8 chr1 176242170 176242295 -66422058 - MIR SINE MIR -17 245 113 197 221 52 78 chr1 176243645 176243722 -66420631 + MIR SINE MIR 20 94 -114 760 167 8 0 chr1 176244711 176244831 -66419522 + FLAM_C SINE Alu 4 124 -9 1418 214 7 7 chr1 176244851 176245150 -66419203 + AluJb SINE Alu 3 301 -11 246 294 59 72 chr1 176245781 176245934 -66418419 - L2 LINE L2 0 3272 3122 188 256 93 23 chr1 176245916 176246002 -66418351 + L3 LINE CR1 677 768 -809 * 320 302 29 50 chr1 176246130 176246269 -66418084 + MIR3 SINE MIR 23 158 -50 378 42 0 0 chr1 176246830 176246878 -66417475 + (TG)n Simple_repeat Simple_repeat 2 49 0 315 191 0 0 chr1 176247104 176247172 -66417181 + CT-rich Low_complexity Low_complexity 4 71 0 639 278 28 0 chr1 176247749 176247925 -66416428 + MER5A DNA MER1_type 9 189 0 566 323 45 0 chr1 176248361 176248562 -66415791 + MIR SINE MIR 50 259 -3 2051 112 0 0 chr1 176248982 176249259 -66415094 - AluSg SINE Alu -33 277 1 909 161 0 0 chr1 176249824 176249967 -66414386 - FRAM SINE Alu -23 153 11 745 270 35 26 chr1 176250847 176251077 -66413276 - MIR SINE MIR 0 262 31 229 227 40 40 chr1 176251330 176251405 -66412948 + GA-rich Low_complexity Low_complexity 5 79 0 591 241 60 65 chr1 176252561 176252760 -66411593 - MIR SINE MIR -2 260 63 487 242 55 42 chr1 176252969 176253134 -66411219 - MIR3 SINE MIR -41 167 1 444 363 14 14 chr1 176253478 176253690 -66410663 + MIR SINE MIR 41 252 -10 248 278 22 56 chr1 176254085 176254175 -66410178 + L2 LINE L2 3176 3262 -51 497 303 66 25 chr1 176254468 176254666 -66409687 + MIR SINE MIR 31 236 -26 442 335 71 60 chr1 176254812 176254960 -66409393 + L2 LINE L2 1542 1687 -1627 2209 112 0 0 chr1 176254960 176255264 -66409089 - AluSg SINE Alu -6 304 1 442 335 71 60 chr1 176255264 176255635 -66408718 + L2 LINE L2 1687 2067 -1247 191 294 100 116 chr1 176255730 176256091 -66408262 + L2 LINE L2 2917 3271 -1 320 216 75 7 chr1 176256148 176256226 -66408127 + MIR SINE MIR 68 148 -60 1575 199 114 24 chr1 176257075 176257452 -66406901 + MER47B DNA MER2_type 8 418 0 370 270 18 18 chr1 176257773 176257884 -66406469 - MER94 DNA DNA 0 134 24 1135 189 42 0 chr1 176257886 176258098 -66406255 - AluJb SINE Alu -91 221 1 2189 89 0 26 chr1 176258468 176258772 -66405581 + AluSc SINE Alu 1 296 -13 26 0 0 0 chr1 176258956 176258982 -66405371 + AT_rich Low_complexity Low_complexity 1 26 0 1930 133 7 3 chr1 176259565 176259859 -66404494 - AluSq SINE Alu -18 295 1 2165 97 7 10 chr1 176259926 176260224 -66404129 - AluSx SINE Alu -13 299 3 469 204 11 0 chr1 176260889 176260977 -66403376 + MIR SINE MIR 52 140 -122 266 351 28 57 chr1 176261431 176261642 -66402711 + MIR SINE MIR 15 219 -43 209 204 0 0 chr1 176264740 176264784 -66399569 + (CAAGG)n Simple_repeat Simple_repeat 3 46 0 590 279 55 24 chr1 176264958 176265123 -66399230 - MER5A DNA MER1_type 0 189 20 906 187 12 12 chr1 176265141 176265312 -66399041 + MER5B DNA MER1_type 8 178 0 22 0 0 0 chr1 176265337 176265359 -66398994 + GC_rich Low_complexity Low_complexity 1 22 0 1669 197 22 19 chr1 176268653 176269013 -66395340 - MLT1A1 LTR MaLR 0 365 5 620 295 109 0 chr1 176269244 176269437 -66394916 + MIR SINE MIR 28 241 -21 2575 68 3 0 chr1 176269732 176270040 -66394313 - AluY SINE Alu -2 309 1 1477 181 38 24 chr1 176270305 176270597 -66393756 - AluJo SINE Alu -16 296 1 676 210 27 75 chr1 176270601 176270621 -66393732 - MIR SINE MIR -85 177 158 1927 162 48 16 chr1 176270621 176270998 -66393355 - MLT1B LTR MaLR -1 389 1 676 210 27 75 chr1 176270998 176271163 -66393190 - MIR SINE MIR -104 158 1 534 285 40 41 chr1 176271764 176272001 -66392352 + MIR SINE MIR 14 249 -13 2308 105 0 3 chr1 176272064 176272370 -66391983 - AluSc SINE Alu -4 305 1 1259 68 0 0 chr1 176272932 176273078 -66391275 - AluSg SINE Alu -26 284 139 608 101 0 0 chr1 176273078 176273157 -66391196 - AluSg SINE Alu -230 80 2 500 216 0 10 chr1 176275340 176275437 -66388916 + MIR SINE MIR 47 142 -120 727 261 22 29 chr1 176275437 176275709 -66388644 + L1ME3A LINE L1 5620 5889 -281 27 62 0 0 chr1 176275709 176275757 -66388596 + AT_rich Low_complexity Low_complexity 1 48 0 2768 128 50 35 chr1 176275835 176276318 -66388035 - LTR2B LTR ERV1 0 490 1 441 239 46 18 chr1 176276425 176276534 -66387819 + MIR SINE MIR 31 142 -120 718 265 22 29 chr1 176276534 176276806 -66387547 + L1ME1 LINE L1 5620 5889 -281 301 315 65 0 chr1 176277740 176277848 -66386505 + MIR SINE MIR 28 142 -120 194 340 0 0 chr1 176277893 176277943 -66386410 + L2 LINE L2 3215 3264 -8 205 246 35 35 chr1 176278500 176278557 -66385796 - L2 LINE L2 0 3272 3216 334 331 31 24 chr1 176279524 176279651 -66384702 - L2 LINE L2 0 3272 3145 858 238 30 31 chr1 176279878 176279990 -66384363 + L1ME2 LINE L1 5027 5138 -1024 2308 114 10 0 chr1 176279990 176280298 -66384055 + AluSx SINE Alu 1 311 -1 858 238 30 31 chr1 176280298 176280591 -66383762 + L1ME2 LINE L1 5138 5430 -732 2191 216 93 35 chr1 176281063 176281775 -66382578 + L1ME2 LINE L1 5409 6161 -3 2324 139 40 10 chr1 176281784 176282180 -66382173 + L1MC1 LINE L1 5925 6332 -1 208 121 0 0 chr1 176282810 176282843 -66381510 + (CA)n Simple_repeat Simple_repeat 2 34 0 334 278 9 53 chr1 176282940 176283105 -66381248 - MIR SINE MIR -58 150 25 893 211 35 62 chr1 176283150 176283439 -66380914 + L1ME1 LINE L1 5881 6161 -5 224 329 13 0 chr1 176283661 176283740 -66380613 - MIR SINE MIR -61 201 122 180 402 47 0 chr1 176284403 176284510 -66379843 - L2 LINE L2 -1 3271 3160 206 269 75 43 chr1 176284706 176284799 -66379554 - L2 LINE L2 -4 3268 3173 2599 55 0 10 chr1 176285844 176286154 -66378199 + AluSg SINE Alu 1 307 -3 201 267 109 20 chr1 176286514 176286615 -66377738 + L2 LINE L2 3158 3267 -5 641 196 229 0 chr1 176286621 176286800 -66377553 - MIR SINE MIR -24 238 19 26 50 0 0 chr1 176287085 176287125 -66377228 + AT_rich Low_complexity Low_complexity 1 40 0 1351 235 101 145 chr1 176287196 176287992 -66376361 - HAL1 LINE L1 -86 2421 1592 1130 137 0 0 chr1 176287992 176288145 -66376208 + AluSg/x SINE Alu 136 288 -22 1351 235 101 145 chr1 176288145 176288514 -66375839 - HAL1 LINE L1 -915 1592 1208 2457 84 10 3 chr1 176288514 176288825 -66375528 - AluSp SINE Alu 0 313 1 1351 235 101 145 chr1 176288825 176289358 -66374995 - HAL1 LINE L1 -1299 1208 651 399 276 32 16 chr1 176291853 176291976 -66372377 + MIR SINE MIR 47 171 -91 255 288 86 67 chr1 176292367 176292634 -66371719 + LTR67 LTR ERVL 255 526 -31 235 273 58 58 chr1 176292697 176292851 -66371502 + L2 LINE L2 3119 3272 -41 313 224 109 5 chr1 176292857 176292994 -66371359 + MIR SINE MIR 12 232 -30 213 195 0 0 chr1 176293793 176293834 -66370519 + C-rich Low_complexity Low_complexity 2 42 0 183 42 0 0 chr1 176293970 176293994 -66370359 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2027 78 3 41 chr1 176293996 176294289 -66370064 - AluSx SINE Alu -30 282 1 371 244 58 3 chr1 176294318 176294459 -66369894 - MIR SINE MIR -58 150 11 219 211 19 19 chr1 176294627 176294679 -66369674 - L2 LINE L2 -4 3309 3258 192 97 0 0 chr1 176294901 176294932 -66369421 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1517 123 104 25 chr1 176294932 176295212 -66369141 + MER39B LTR ERV1 48 341 -312 1667 151 11 46 chr1 176295276 176295634 -66368719 + MER4A LTR ERV1 261 664 0 1913 105 13 13 chr1 176295635 176295941 -66368412 + MER39B LTR ERV1 339 622 0 414 200 47 0 chr1 176296280 176296365 -66367988 + MIR SINE MIR 104 192 -70 264 276 35 0 chr1 176297344 176297431 -66366922 + MIR SINE MIR 48 137 -125 263 242 16 16 chr1 176298005 176298067 -66366286 - L2 LINE L2 -4 3309 3248 354 23 0 0 chr1 176298272 176298315 -66366038 + (CA)n Simple_repeat Simple_repeat 2 44 0 976 224 4 61 chr1 176299826 176300089 -66364264 + MIR SINE MIR 15 262 0 384 295 92 78 chr1 176300109 176300380 -66363973 - L2 LINE L2 -3 3269 2995 742 220 86 14 chr1 176300383 176300592 -66363761 + L1ME2 LINE L1 5932 6155 -9 1944 89 0 4 chr1 176302141 176302389 -66361964 - AluSq SINE Alu -65 248 2 259 228 0 35 chr1 176302635 176302692 -66361661 - MIR SINE MIR -10 252 198 740 326 71 6 chr1 176302758 176303083 -66361270 + LTR16A LTR ERVL 99 444 -6 427 250 83 0 chr1 176303087 176303183 -66361170 - MIR SINE MIR -65 197 94 253 298 0 0 chr1 176303252 176303309 -66361044 - MIR SINE MIR -190 72 16 347 0 23 0 chr1 176303469 176303512 -66360841 + (TG)n Simple_repeat Simple_repeat 1 44 0 236 309 0 0 chr1 176303539 176303594 -66360759 + MIR SINE MIR 53 107 -155 233 100 0 0 chr1 176303624 176303654 -66360699 + L2 LINE L2 3264 3293 -20 345 245 41 31 chr1 176303676 176303774 -66360579 + MIR SINE MIR 66 164 -98 203 189 0 0 chr1 176306133 176306170 -66358183 + T-rich Low_complexity Low_complexity 1 37 0 213 121 0 0 chr1 176306329 176306362 -66357991 + (TAA)n Simple_repeat Simple_repeat 2 34 0 961 261 161 39 chr1 176307221 176307959 -66356394 - L2 LINE L2 -8 3305 2494 279 0 0 0 chr1 176308474 176308505 -66355848 + (A)n Simple_repeat Simple_repeat 1 31 0 203 171 0 24 chr1 176309748 176309789 -66354564 + (TTG)n Simple_repeat Simple_repeat 3 42 0 1535 165 22 15 chr1 176310663 176310936 -66353417 + AluJb SINE Alu 4 278 -34 368 254 109 43 chr1 176311293 176311431 -66352922 - MIR SINE MIR -68 194 48 304 332 85 60 chr1 176311669 176312140 -66352213 + L2 LINE L2 2594 3079 -193 340 227 338 15 chr1 176312293 176312491 -66351862 + MIR SINE MIR 1 262 0 225 254 60 30 chr1 176312474 176312541 -66351812 + L2 LINE L2 3218 3286 -27 * 2414 75 0 3 chr1 176313097 176313391 -66350962 + AluSq SINE Alu 1 293 -20 544 332 58 8 chr1 176313802 176314043 -66350310 + MIR SINE MIR 4 256 -6 755 244 6 17 chr1 176314043 176314215 -66350138 - MIR SINE MIR -24 238 69 1305 40 11 6 chr1 176314297 176314474 -66349879 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 441 141 0 0 chr1 176314495 176314566 -66349787 - Alu SINE Alu 0 312 242 1089 281 51 40 chr1 176314996 176315386 -66348967 + MER90 LTR ERV1 70 454 -121 1710 173 0 53 chr1 176315386 176315704 -66348649 + AluJo SINE Alu 1 301 -11 2264 107 0 7 chr1 176315704 176316002 -66348351 + AluSg SINE Alu 1 297 -13 1089 281 51 40 chr1 176316002 176316084 -66348269 + MER90 LTR ERV1 453 548 -27 1360 267 57 33 chr1 176316177 176316807 -66347546 + L2 LINE L2 2558 3171 -142 2242 115 0 0 chr1 176316807 176317095 -66347258 + AluSx SINE Alu 1 288 -24 2209 117 0 0 chr1 176317095 176317385 -66346968 + AluSg SINE Alu 16 305 -5 1360 267 57 33 chr1 176317385 176317441 -66346912 + L2 LINE L2 3170 3263 -50 721 198 35 23 chr1 176317431 176317603 -66346750 + MIR SINE MIR 89 262 0 * 192 273 32 130 chr1 176317805 176317934 -66346419 + L2 LINE L2 3173 3286 -27 2310 101 0 0 chr1 176317934 176318232 -66346121 - AluSx SINE Alu -14 298 1 192 273 32 130 chr1 176318232 176318256 -66346097 + L2 LINE L2 3286 3311 -2 401 253 132 23 chr1 176318799 176318973 -66345380 - MIR3 SINE MIR -13 195 3 209 224 143 0 chr1 176319094 176319143 -66345210 + MIR SINE MIR 197 252 -10 2369 149 5 14 chr1 176320500 176320869 -66343484 - MER47A DNA MER2_type 0 366 1 624 303 114 54 chr1 176321085 176321637 -66342716 + L1ME4a LINE L1 5535 6119 -2 381 278 85 39 chr1 176323901 176324118 -66340235 + MIR SINE MIR 20 253 -9 1926 179 30 35 chr1 176324658 176325217 -66339136 - MLT2A1 LTR ERVL 0 554 1 231 361 9 9 chr1 176326090 176326198 -66338155 + L2 LINE L2 2947 3054 -218 180 194 167 0 chr1 176326509 176326545 -66337808 - MIR3 SINE MIR -51 157 116 408 264 23 46 chr1 176326679 176326846 -66337507 + MIR3 SINE MIR 3 165 -59 2496 84 0 0 chr1 176326906 176327216 -66337137 + AluSg SINE Alu 1 310 0 244 306 126 9 chr1 176328060 176328171 -66336182 - L2 LINE L2 -2 3270 3147 334 373 60 27 chr1 176328314 176328499 -66335854 + L2 LINE L2 3073 3263 -9 650 277 78 5 chr1 176328586 176328792 -66335561 - MIR SINE MIR -28 234 14 261 277 64 64 chr1 176328815 176328956 -66335397 - MIR3 SINE MIR -47 161 21 3308 115 40 14 chr1 176329461 176329932 -66334421 - L1PB4 LINE L1 -12 6144 5658 1585 151 0 0 chr1 176329932 176330157 -66334196 + AluSx SINE Alu 1 225 -87 3308 115 40 14 chr1 176330157 176330181 -66334172 - L1PB4 LINE L1 -498 5658 5636 4233 168 20 6 chr1 176330185 176331163 -66333190 - L1PB4 LINE L1 -636 5520 4531 21 0 0 0 chr1 176331369 176331390 -66332963 + AT_rich Low_complexity Low_complexity 1 21 0 37 23 0 0 chr1 176331461 176331505 -66332848 + AT_rich Low_complexity Low_complexity 1 44 0 1212 88 6 47 chr1 176331505 176331675 -66332678 + AluSg SINE Alu 2 164 -146 3226 106 34 0 chr1 176331675 176332147 -66332206 + L1P LINE L1 92 579 -5567 226 327 0 0 chr1 176332248 176332300 -66332053 - MER5A DNA MER1_type -120 69 18 1019 199 14 57 chr1 176333471 176333707 -66330646 - L1P1 LINE L1 -528 5627 5437 2360 94 3 3 chr1 176333707 176334015 -66330338 - AluSq SINE Alu -5 308 1 1019 199 14 57 chr1 176334015 176334096 -66330257 - L1P1 LINE L1 -718 5437 5354 3376 56 0 17 chr1 176334096 176334506 -66329847 - SVA Other Other 0 1386 984 1495 123 9 26 chr1 176334606 176334834 -66329519 - AluSx SINE Alu -88 224 1 484 219 32 16 chr1 176335482 176335605 -66328748 - MER46C DNA MER2_type -208 130 6 252 350 83 8 chr1 176335611 176335731 -66328622 - MIR SINE MIR -112 150 22 396 313 27 27 chr1 176336301 176336448 -66327905 - MIR SINE MIR -48 214 68 229 216 0 20 chr1 176336564 176336615 -66327738 - L2 LINE L2 -2 3311 3262 1211 164 33 9 chr1 176336673 176336887 -66327466 + MER20 DNA MER1_type 1 219 0 436 293 132 21 chr1 176337007 176337249 -66327104 + L2 LINE L2 3004 3272 0 430 308 53 6 chr1 176337329 176337498 -66326855 - MIR SINE MIR -66 196 20 189 259 0 56 chr1 176338068 176338122 -66326231 - L2 LINE L2 -13 3259 3209 231 250 0 0 chr1 176338549 176338593 -66325760 + L2 LINE L2 3206 3249 -23 1038 206 36 24 chr1 176338618 176338865 -66325488 + MLT1A2 LTR MaLR 1 250 -124 2456 76 0 3 chr1 176338954 176339256 -66325097 - AluY SINE Alu -10 301 1 1724 175 0 29 chr1 176339367 176339676 -66324677 + AluSx SINE Alu 1 300 -12 3940 98 2 6 chr1 176339681 176340194 -66324159 - MER9 LTR ERVK 0 511 1 46 19 0 0 chr1 176340298 176340351 -66324002 + AT_rich Low_complexity Low_complexity 1 53 0 232 220 0 0 chr1 176340585 176340635 -66323718 - MLT1J LTR MaLR -45 466 417 2053 283 75 21 chr1 176340685 176341718 -66322635 - L2 LINE L2 -73 3240 2149 738 239 5 35 chr1 176341741 176341938 -66322415 - MLT1J LTR MaLR -318 193 3 228 329 6 46 chr1 176342006 176342242 -66322111 + GA-rich Low_complexity Low_complexity 1 226 0 427 233 0 0 chr1 176342312 176342415 -66321938 + FRAM SINE Alu 74 176 0 973 69 0 0 chr1 176343371 176343487 -66320866 - AluSg/x SINE Alu -23 289 174 578 287 72 29 chr1 176343660 176343939 -66320414 - L1ME LINE L1 -335 5786 5496 363 306 87 18 chr1 176344138 176344357 -66319996 - L1ME LINE L1 -846 5300 5067 4401 194 26 30 chr1 176344636 176346320 -66318033 + L1MB8 LINE L1 4500 6175 -3 959 167 0 12 chr1 176346335 176346497 -66317856 - FRAM SINE Alu -19 157 1 337 208 313 0 chr1 176347145 176347241 -66317112 + MER5B DNA MER1_type 1 126 -52 438 262 10 0 chr1 176347241 176347344 -66317009 + L1MCa LINE L1 5 108 -6318 6478 143 65 14 chr1 176347344 176348517 -66315836 + Ricksha DNA DNA 2002 3233 -13 709 191 62 12 chr1 176348413 176348575 -66315778 - Ricksha DNA DNA -1876 170 1 * 311 284 28 14 chr1 176348714 176348855 -66315498 + LTR33 LTR ERVL 369 511 -10 186 103 0 0 chr1 176349313 176349342 -66315011 + (CCCCAG)n Simple_repeat Simple_repeat 2 30 0 1031 162 11 31 chr1 176349402 176349593 -66314760 - MER53 DNA DNA -2 187 1 805 142 0 0 chr1 176350062 176350213 -66314140 - AluJb SINE Alu 0 312 162 456 269 66 22 chr1 176350396 176350578 -66313775 - MIR SINE MIR -32 230 41 271 282 78 39 chr1 176351288 176351391 -66312962 + L2 LINE L2 3194 3300 -13 245 276 7 138 chr1 176351368 176351520 -66312833 - L2 LINE L2 -2 3270 3139 * 2478 206 86 34 chr1 176352464 176353057 -66311296 + MLT1E2 LTR MaLR 3 626 0 339 85 0 0 chr1 176353321 176353368 -66310985 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 253 238 155 107 chr1 176353380 176353548 -66310805 + MER102b DNA MER1_type 161 336 -5 419 294 18 30 chr1 176354765 176354950 -66309403 + MIR SINE MIR 23 205 -57 199 250 0 0 chr1 176355092 176355144 -66309209 - MIR SINE MIR -120 88 37 2517 148 8 5 chr1 176356041 176356433 -66307920 + L1PB4 LINE L1 5763 6155 -1 566 249 83 6 chr1 176357668 176357837 -66306516 + MIR3 SINE MIR 6 187 -21 1740 209 71 34 chr1 176358120 176358216 -66306137 + MSTD LTR MaLR 1 92 -304 2026 139 3 20 chr1 176358216 176358517 -66305836 + AluSp SINE Alu 1 296 -17 1740 209 71 34 chr1 176358517 176358802 -66305551 + MSTD LTR MaLR 92 396 0 195 259 17 0 chr1 176358804 176358862 -66305491 - MIR SINE MIR -73 135 77 2294 82 0 3 chr1 176359010 176359302 -66305051 + AluY SINE Alu 5 295 -16 2059 166 19 0 chr1 176359334 176359659 -66304694 - MER7A DNA MER2_type -17 329 1 293 293 30 6 chr1 176359659 176359826 -66304527 + (TA)n Simple_repeat Simple_repeat 2 172 0 652 236 26 40 chr1 176361142 176361320 -66303033 + MIR SINE MIR 34 206 -56 231 226 22 109 chr1 176362008 176362145 -66302208 + Charlie8 DNA MER1_type 40 164 -2253 372 301 19 83 chr1 176363444 176363549 -66300804 - L2 LINE L2 -469 2845 2760 2363 82 0 0 chr1 176363549 176363840 -66300513 - AluY SINE Alu -20 291 1 372 301 19 83 chr1 176363840 176363950 -66300403 - L2 LINE L2 -554 2760 2644 287 396 52 0 chr1 176364152 176364344 -66300009 + L2 LINE L2 3103 3304 -9 2119 113 14 0 chr1 176364729 176365022 -66299331 + AluSc SINE Alu 1 297 -12 633 200 107 7 chr1 176365162 176365312 -66299041 + L1MA4 LINE L1 1238 1402 -5163 * 12625 174 38 10 chr1 176365286 176370461 -66293892 + L1MA4 LINE L1 2428 7715 -4 278 325 25 0 chr1 176372018 176372098 -66292255 - L2 LINE L2 -22 3250 3169 296 310 43 17 chr1 176372245 176372422 -66291931 + MER63 DNA MER1_type 27 1060 -1 435 322 92 0 chr1 176372422 176372596 -66291757 + L2 LINE L2 2449 2638 -676 616 250 11 60 chr1 176372596 176372780 -66291573 - MER96 DNA MER1_type? 0 175 1 196 397 0 0 chr1 176372780 176372853 -66291500 + L2 LINE L2 2631 2703 -611 2132 122 3 0 chr1 176372880 176373175 -66291178 - AluSx SINE Alu -16 296 1 2681 229 47 14 chr1 176373196 176373935 -66290418 + L1ME1 LINE L1 37 800 -5596 1526 148 63 45 chr1 176373963 176374295 -66290058 - MER46B DNA MER2_type -2 234 22 3425 198 38 53 chr1 176374295 176374495 -66289858 + L1ME1 LINE L1 5244 5446 -789 2265 79 76 23 chr1 176374495 176374837 -66289516 + THE1B LTR MaLR 3 362 -2 3425 198 38 53 chr1 176374837 176375626 -66288727 + L1ME1 LINE L1 5446 6226 -9 826 305 133 15 chr1 176375646 176376036 -66288317 - L2 LINE L2 -1477 1837 1402 208 258 82 107 chr1 176376066 176376225 -66288128 - L2 LINE L2 -2343 971 817 2253 115 3 0 chr1 176376581 176376876 -66287477 - AluSx SINE Alu -16 296 1 231 222 158 20 chr1 176376969 176377200 -66287153 + L1P5 LINE L1 5304 5562 -594 218 357 101 13 chr1 176377361 176377599 -66286754 + L2 LINE L2 2807 3065 -248 580 248 109 0 chr1 176377714 176377851 -66286502 - MIR SINE MIR -86 176 25 416 278 116 6 chr1 176377823 176377996 -66286357 + L2 LINE L2 3081 3272 0 * 292 229 52 10 chr1 176378019 176378115 -66286238 + L1MC4a LINE L1 5783 5882 -1926 292 229 52 10 chr1 176378124 176378220 -66286133 + L1MC4a LINE L1 5783 5882 -1926 482 292 64 12 chr1 176378947 176379118 -66285235 - MIR SINE MIR -63 199 20 207 146 0 0 chr1 176379309 176379350 -66285003 + (CA)n Simple_repeat Simple_repeat 1 41 0 214 359 0 0 chr1 176379433 176379497 -66284856 - MIR3 SINE MIR -21 187 124 462 327 139 0 chr1 176379536 176379744 -66284609 + MIR SINE MIR 20 256 -6 224 224 52 0 chr1 176380506 176380564 -66283789 + MIR SINE MIR 105 165 -97 330 26 0 0 chr1 176380964 176381003 -66283350 + (TG)n Simple_repeat Simple_repeat 2 40 0 241 255 75 0 chr1 176381990 176382084 -66282269 + L1MEc LINE L1 248 348 -6259 277 309 252 0 chr1 176382202 176382325 -66282028 + MIR SINE MIR 38 191 -71 1977 135 67 14 chr1 176382403 176382759 -66281594 + THE1C LTR MaLR 1 375 0 2680 114 23 9 chr1 176382773 176383202 -66281151 + THE1C-int LTR MaLR 1145 1579 -1 2169 104 73 22 chr1 176383203 176383560 -66280793 + THE1C LTR MaLR 1 375 0 223 296 61 80 chr1 176384311 176384622 -66279731 + L2 LINE L2 2070 2374 -940 2176 253 52 24 chr1 176384636 176384880 -66279473 - L1M4 LINE L1 -2104 4540 4304 1490 174 8 23 chr1 176384880 176385144 -66279209 - AluJb SINE Alu -52 260 1 2176 253 52 24 chr1 176385144 176385811 -66278542 - L1M4 LINE L1 -2340 4304 3604 440 253 47 11 chr1 176385792 176385982 -66278371 - L1M4 LINE L1 -4785 1861 1665 * 1338 224 51 61 chr1 176385982 176386510 -66277843 - L1M4 LINE L1 -5145 1397 875 401 269 71 15 chr1 176386874 176387071 -66277282 - L1M4 LINE L1 -6319 223 16 249 302 104 21 chr1 176387733 176387829 -66276524 + L2 LINE L2 3208 3311 -2 1703 149 0 33 chr1 176388207 176388508 -66275845 + AluJb SINE Alu 19 309 -3 206 211 115 0 chr1 176388978 176389030 -66275323 - L2 LINE L2 -649 2665 2608 324 268 0 24 chr1 176389052 176389134 -66275219 + L1ME LINE L1 5676 5755 -366 555 315 128 13 chr1 176389901 176390136 -66274217 + L2 LINE L2 247 508 -2806 1807 193 0 16 chr1 176390161 176390472 -66273881 + AluJo SINE Alu 3 308 -4 186 43 0 0 chr1 176390826 176390849 -66273504 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 284 299 57 28 chr1 176390849 176391026 -66273327 + L1MEc LINE L1 342 523 -5893 457 271 96 52 chr1 176391597 176392247 -66272106 + L1MEc LINE L1 1209 1736 -4692 3509 189 26 9 chr1 176392598 176393276 -66271077 + L1MA4 LINE L1 11 700 -4628 1391 166 28 0 chr1 176393277 176393494 -66270859 + AluJb SINE Alu 82 304 -8 5272 226 27 25 chr1 176393524 176395185 -66269168 + L1MA4 LINE L1 772 2436 -3892 838 169 6 36 chr1 176395189 176395355 -66268998 + LTR1B LTR ERV1 1 161 -665 6821 182 55 24 chr1 176395373 176396777 -66267576 + HUERS-P2 LTR ERV1 111 1558 -1530 7735 128 34 27 chr1 176396784 176397337 -66267016 + HUERS-P2 LTR ERV1 1787 2335 -753 2091 136 10 0 chr1 176397337 176397632 -66266721 + AluSx SINE Alu 1 298 -14 7735 128 34 27 chr1 176397632 176398371 -66265982 + HUERS-P2 LTR ERV1 2335 3088 0 3942 179 88 7 chr1 176398371 176399135 -66265218 + LTR1B LTR ERV1 1 826 0 1141 214 18 0 chr1 176399135 176399411 -66264942 + L1MA4 LINE L1 2441 2721 -3607 4819 162 21 51 chr1 176399411 176400058 -66264295 + L1MA4 LINE L1 4444 5109 -1373 2108 105 7 26 chr1 176400058 176400362 -66263991 + AluSp SINE Alu 1 298 -15 4819 162 21 51 chr1 176400362 176400822 -66263531 + L1MA4 LINE L1 5109 5581 -901 417 20 0 0 chr1 176400822 176400872 -66263481 + (TCTCCC)n Simple_repeat Simple_repeat 1 50 0 6170 73 46 33 chr1 176400872 176402624 -66261729 + SVA Other Other 57 1386 0 4819 162 21 51 chr1 176402624 176402705 -66261648 + L1MA4 LINE L1 5580 5662 -820 2455 81 3 3 chr1 176402705 176403013 -66261340 + AluSq SINE Alu 1 308 -5 194 61 0 30 chr1 176403013 176403046 -66261307 + (CCA)n Simple_repeat Simple_repeat 1 32 0 4819 162 21 51 chr1 176403046 176403307 -66261046 + L1MA4 LINE L1 5661 5928 -554 1807 169 24 3 chr1 176403307 176403602 -66260751 + AluJb SINE Alu 1 301 -11 4819 162 21 51 chr1 176403602 176404015 -66260338 + L1MA4 LINE L1 5928 6249 -233 2434 100 3 0 chr1 176404015 176404324 -66260029 + AluSp SINE Alu 1 310 -3 4819 162 21 51 chr1 176404324 176404549 -66259804 + L1MA4 LINE L1 6249 6479 -3 268 228 68 1 chr1 176404564 176404657 -66259696 + L1MEc LINE L1 2392 2488 -3938 465 281 27 0 chr1 176405049 176405234 -66259119 + L1MEc LINE L1 3589 3778 -2648 424 301 63 42 chr1 176405237 176405695 -66258658 + L1MEc LINE L1 4349 4816 -1610 2719 254 48 68 chr1 176405717 176407021 -66257332 + L1M4 LINE L1 13 1290 -5252 2471 88 0 3 chr1 176407021 176407328 -66257025 + AluSx SINE Alu 1 306 -6 2719 254 48 68 chr1 176407328 176407381 -66256972 + L1M4 LINE L1 1290 1343 -5199 5611 68 15 100 chr1 176407397 176408399 -66255954 - L1MA2 LINE L1 0 6304 5388 324 255 61 0 chr1 176408413 176408511 -66255842 + L1M4 LINE L1 3426 3529 -3115 6294 244 56 19 chr1 176408539 176408708 -66255645 + L1M4 LINE L1 3425 3586 -3058 1758 179 17 0 chr1 176408708 176409004 -66255349 - AluJo SINE Alu -11 301 1 6294 244 56 19 chr1 176409004 176409684 -66254669 + L1M4 LINE L1 3586 4240 -2404 2262 119 3 0 chr1 176409684 176409995 -66254358 + AluSx SINE Alu 1 312 0 6294 244 56 19 chr1 176409995 176411399 -66252954 + L1M4 LINE L1 4240 5761 -883 3953 194 22 51 chr1 176411399 176412210 -66252143 + L1P LINE L1 1916 2688 -3458 2282 116 0 0 chr1 176412210 176412521 -66251832 + AluSq SINE Alu 1 311 -2 3953 194 22 51 chr1 176412521 176412805 -66251548 + L1P LINE L1 2688 2979 -3167 1051 268 62 9 chr1 176412802 176413142 -66251211 + L1MC4 LINE L1 6696 7053 -989 * 564 200 14 2 chr1 176413144 176413289 -66251064 + L1MC4 LINE L1 7147 7375 -513 601 184 29 0 chr1 176413298 176413401 -66250952 + FLAM_C SINE Alu 19 124 -19 644 215 93 5 chr1 176413411 176413616 -66250737 + L1MC4 LINE L1 7378 7600 -442 698 219 6 6 chr1 176413629 176413807 -66250546 + L1MC4 LINE L1 7720 7897 -145 188 158 18 0 chr1 176413929 176413986 -66250367 + (TA)n Simple_repeat Simple_repeat 2 59 0 291 93 0 0 chr1 176414000 176414043 -66250310 + (CA)n Simple_repeat Simple_repeat 2 44 0 269 26 26 0 chr1 176414044 176414082 -66250271 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 2636 322 76 45 chr1 176414083 176414918 -66249435 + ERVL LTR ERVL 2586 3393 -2092 2491 153 26 2 chr1 176414918 176415335 -66249018 + MSTA LTR MaLR 2 428 0 2636 322 76 45 chr1 176415335 176416734 -66247619 + ERVL LTR ERVL 3393 4852 -633 734 121 8 0 chr1 176416735 176416859 -66247494 - Charlie5 DNA MER1_type -27 2585 2461 390 154 0 0 chr1 176416862 176416927 -66247426 - Charlie5 DNA MER1_type -2545 67 3 316 275 12 0 chr1 176416996 176417076 -66247277 + ERVL LTR ERVL 4984 5064 -700 848 279 35 43 chr1 176417460 176417855 -66246498 + LTR16A LTR ERVL 19 410 -40 2278 90 0 17 chr1 176418375 176418674 -66245679 + AluY SINE Alu 2 295 -16 237 299 41 0 chr1 176418849 176418946 -66245407 - MARNA DNA Mariner -7 579 479 656 170 0 9 chr1 176418962 176419074 -66245279 - AluJo SINE Alu -174 138 28 328 313 31 8 chr1 176419195 176419323 -66245030 - MARNA DNA Mariner -169 417 287 204 40 0 0 chr1 176419597 176419622 -66244731 + (CAT)n Simple_repeat Simple_repeat 3 27 0 288 305 19 71 chr1 176419655 176419789 -66244564 + MIR SINE MIR 17 126 -82 2165 102 3 0 chr1 176419789 176420073 -66244280 + AluSx SINE Alu 1 285 -27 288 305 19 71 chr1 176420073 176420092 -66244261 + MIR SINE MIR 126 144 -64 1491 176 103 0 chr1 176420116 176420388 -66243965 + AluJb SINE Alu 1 300 -12 321 284 11 0 chr1 176420978 176421066 -66243287 - MIR SINE MIR -112 150 62 535 277 60 16 chr1 176421093 176421277 -66243076 - MER112 DNA MER1_type -4 256 65 579 236 107 52 chr1 176421398 176421631 -66242722 - MIR SINE MIR 0 262 17 581 222 217 5 chr1 176421853 176422051 -66242302 + MIR SINE MIR 23 262 0 1948 5 0 0 chr1 176422556 176422762 -66241591 - AluYa5 SINE Alu -7 304 99 583 314 102 58 chr1 176423524 176423957 -66240396 - L2 LINE L2 0 3272 2821 26 64 0 0 chr1 176424225 176424272 -66240081 + AT_rich Low_complexity Low_complexity 1 47 0 2303 111 3 0 chr1 176424330 176424637 -66239716 + AluSp SINE Alu 1 308 -5 1548 154 6 134 chr1 176424650 176424994 -66239359 + AluSx SINE Alu 1 300 -2 22 35 0 0 chr1 176425007 176425036 -66239317 + AT_rich Low_complexity Low_complexity 1 29 0 1393 235 53 0 chr1 176425265 176425584 -66238769 - MER58B DNA MER1_type -1 340 5 201 224 61 0 chr1 176425797 176425846 -66238507 - MIR SINE MIR -93 169 118 6136 142 48 165 chr1 176425854 176427571 -66236782 + L1M2a LINE L1 3 1518 -5645 620 128 0 0 chr1 176427571 176427665 -66236688 + L1PA13 LINE L1 6070 6163 0 228 262 52 17 chr1 176427677 176427849 -66236504 + (TA)n Simple_repeat Simple_repeat 2 179 0 3752 178 50 28 chr1 176427860 176428641 -66235712 - L1MA10 LINE L1 -2 6568 5771 7246 210 57 88 chr1 176428682 176429311 -66235042 - L1MA10 LINE L1 -1795 4587 3940 1579 201 24 0 chr1 176429311 176429605 -66234748 - AluJo SINE Alu -11 301 1 7246 210 57 88 chr1 176429605 176430549 -66233804 - L1MA10 LINE L1 -2442 3940 2968 2075 135 7 0 chr1 176430549 176430845 -66233508 + AluSx SINE Alu 1 298 -14 7246 210 57 88 chr1 176430845 176430862 -66233491 - L1MA10 LINE L1 -3414 2968 2952 928 209 0 0 chr1 176430862 176431020 -66233333 - FRAM SINE Alu -17 159 2 7246 210 57 88 chr1 176431020 176433055 -66231298 - L1MA10 LINE L1 -3430 2952 925 901 196 0 0 chr1 176433055 176433213 -66231140 + FRAM SINE Alu 1 155 -21 1530 296 44 74 chr1 176433267 176434290 -66230063 - L1M3a LINE L1 -4962 993 2 1100 258 103 71 chr1 176434297 176434952 -66229401 - L2 LINE L2 -162 3151 2431 479 306 10 47 chr1 176435230 176435423 -66228930 + MIR SINE MIR 27 212 -50 1272 318 51 16 chr1 176435470 176435960 -66228393 + LTR33 LTR ERVL 15 521 0 2126 162 37 9 chr1 176436285 176436613 -66227740 - MER1B DNA MER1_type 0 337 1 358 159 32 0 chr1 176438268 176438331 -66226022 - MER58 DNA MER1_type -1 2419 2355 275 200 187 0 chr1 176438337 176438412 -66225941 - MER58 DNA MER1_type -116 99 11 448 240 40 27 chr1 176439566 176439716 -66224637 + L2 LINE L2 3162 3313 0 1399 251 58 50 chr1 176440506 176441102 -66223251 - L2 LINE L2 0 3313 2702 8060 203 26 33 chr1 176441111 176442525 -66221828 - L1MB3 LINE L1 -3 6416 4993 9397 33 1 1 chr1 176442525 176444353 -66220000 - L1PA4 LINE L1 -1 6154 4324 8060 203 26 33 chr1 176444353 176445677 -66218676 - L1MB3 LINE L1 -1426 4993 3698 3125 39 6 0 chr1 176445677 176446036 -66218317 - L1PA5 LINE L1 0 6154 5794 8060 203 26 33 chr1 176446036 176446207 -66218146 - L1MB3 LINE L1 -2721 3698 3527 1190 213 60 22 chr1 176446224 176446492 -66217861 - AluJo SINE Alu -29 283 6 2137 114 13 3 chr1 176446550 176446858 -66217495 - AluSx SINE Alu -1 311 1 13066 168 49 38 chr1 176446867 176447983 -66216370 - L1MB3 LINE L1 -2886 3496 2394 2452 82 0 3 chr1 176447983 176448288 -66216065 - AluY SINE Alu -7 304 1 13066 168 49 38 chr1 176448288 176449963 -66214390 - L1MB3 LINE L1 -3988 2394 657 222 37 0 0 chr1 176449963 176449990 -66214363 + (TTA)n Simple_repeat Simple_repeat 1 27 0 13066 168 49 38 chr1 176449990 176450639 -66213714 - L1MB3 LINE L1 -5725 657 17 527 272 101 0 chr1 176450653 176450811 -66213542 - L2 LINE L2 -604 2710 2537 186 43 0 0 chr1 176451057 176451080 -66213273 + (CA)n Simple_repeat Simple_repeat 2 24 0 264 100 0 0 chr1 176451119 176451159 -66213194 + (CA)n Simple_repeat Simple_repeat 2 41 0 299 299 110 6 chr1 176452170 176452334 -66212019 - MER117 DNA MER1_type -10 187 7 1839 163 0 10 chr1 176452530 176452836 -66211517 + AluJb SINE Alu 1 303 -9 297 304 53 32 chr1 176454027 176454132 -66210221 + MIR SINE MIR 3 104 -158 2057 123 0 0 chr1 176454132 176454416 -66209937 - AluSx SINE Alu -6 306 23 297 304 53 32 chr1 176454416 176454511 -66209842 + MIR SINE MIR 104 206 -56 2302 97 3 3 chr1 176454705 176455003 -66209350 + AluSp SINE Alu 1 298 -15 416 358 81 32 chr1 176455120 176455653 -66208700 + L2 LINE L2 2414 2972 -342 2288 112 0 0 chr1 176455691 176456003 -66208350 - AluSx SINE Alu 0 312 1 309 331 0 53 chr1 176456202 176456335 -66208018 + L2 LINE L2 3139 3264 -8 246 342 107 67 chr1 176456580 176456676 -66207677 - L2 LINE L2 -35 3237 3146 375 23 0 0 chr1 176456676 176456720 -66207633 + (CA)n Simple_repeat Simple_repeat 1 44 0 246 342 107 67 chr1 176456720 176457024 -66207329 - L2 LINE L2 -126 3146 2821 695 311 241 22 chr1 176457442 176458155 -66206198 - L3 LINE CR1 -13 1564 696 2159 133 0 0 chr1 176458550 176458851 -66205502 + AluSx SINE Alu 1 301 -11 370 307 67 118 chr1 176459014 176459811 -66204542 + L2 LINE L2 2216 2971 -343 249 333 114 0 chr1 176459980 176460112 -66204241 + L2 LINE L2 3122 3268 -4 2017 148 10 0 chr1 176460139 176460437 -66203916 - AluSx SINE Alu -11 301 1 200 143 0 48 chr1 176460948 176460990 -66203363 + (GGAGAA)n Simple_repeat Simple_repeat 3 42 0 629 189 0 0 chr1 176461564 176461659 -66202694 + FRAM SINE Alu 59 153 -23 354 236 39 79 chr1 176462619 176462746 -66201607 - MER5A DNA MER1_type -25 164 43 1927 147 0 7 chr1 176462778 176463107 -66201246 + AluSx SINE Alu 1 327 0 495 318 45 41 chr1 176463178 176463420 -66200933 - ERVL LTR ERVL -3788 1976 1734 546 213 16 24 chr1 176463420 176463547 -66200806 - L2 LINE L2 -1 3312 3187 354 342 25 0 chr1 176463570 176463690 -66200663 - ERVL LTR ERVL -4102 1662 1540 874 151 0 16 chr1 176463878 176464004 -66200349 + FLAM_C SINE Alu 1 124 -9 279 222 28 28 chr1 176464017 176464197 -66200156 + (TA)n Simple_repeat Simple_repeat 1 180 0 41 90 0 0 chr1 176464197 176464308 -66200045 + AT_rich Low_complexity Low_complexity 1 111 0 312 209 22 39 chr1 176464308 176464490 -66199863 + (TA)n Simple_repeat Simple_repeat 1 179 0 313 250 18 18 chr1 176464501 176464665 -66199688 + (TA)n Simple_repeat Simple_repeat 1 164 0 2891 81 98 5 chr1 176465426 176465836 -66198517 + LTR7 LTR ERV1 1 448 -2 804 132 78 66 chr1 176466118 176466285 -66198068 + AluJo SINE Alu 3 171 -141 583 149 0 0 chr1 176466754 176466841 -66197512 + AluJ/FRAM SINE Alu 217 303 -9 2300 72 7 3 chr1 176467646 176467937 -66196416 + AluSg SINE Alu 1 292 -18 200 270 258 0 chr1 176468062 176468151 -66196202 + MIR SINE MIR 77 188 -74 1641 157 18 18 chr1 176468403 176468685 -66195668 + AluJb SINE Alu 1 281 -31 208 0 0 0 chr1 176468685 176468708 -66195645 + (CAAA)n Simple_repeat Simple_repeat 2 92 0 383 162 15 0 chr1 176470522 176470590 -66193763 - MLT1A1 LTR MaLR 0 365 297 1473 147 0 77 chr1 176470590 176470849 -66193504 + AluJb SINE Alu 1 239 -73 1020 193 26 80 chr1 176470849 176470891 -66193462 - LTR8 LTR ERV1 -445 246 203 2105 127 0 43 chr1 176470891 176471027 -66193326 + AluSx SINE Alu 1 141 -171 213 39 0 0 chr1 176471027 176471053 -66193300 + (TCTCCC)n Simple_repeat Simple_repeat 5 30 0 11396 39 6 31 chr1 176471062 176472490 -66191863 + SVA Other Other 32 1386 0 2105 127 0 43 chr1 176472490 176472666 -66191687 + AluSx SINE Alu 149 309 -3 1020 193 26 80 chr1 176472666 176472881 -66191472 - LTR8 LTR ERV1 -488 203 3 1222 194 46 95 chr1 176472881 176473293 -66191060 + MSTD LTR MaLR 1 392 -4 294 289 134 0 chr1 176473856 176473953 -66190400 + L2 LINE L2 3163 3272 0 282 235 41 41 chr1 176474305 176474403 -66189950 - MER106B DNA MER1_type -1 1058 961 276 236 169 22 chr1 176474652 176474741 -66189612 - MER5A DNA MER1_type -24 165 64 216 276 11 23 chr1 176474949 176475036 -66189317 + GA-rich Low_complexity Low_complexity 1 86 0 184 347 95 0 chr1 176475193 176475288 -66189065 + MIR SINE MIR 1 104 -158 2262 112 0 0 chr1 176475289 176475575 -66188778 + AluSx SINE Alu 1 286 -26 185 260 20 0 chr1 176475587 176475637 -66188716 + MIR SINE MIR 96 146 -116 860 195 52 7 chr1 176475680 176475855 -66188498 + AluJo SINE Alu 123 304 0 215 127 18 36 chr1 176475921 176475976 -66188377 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 324 278 53 45 chr1 176475987 176476120 -66188233 - MIR3 SINE MIR -21 187 54 2219 113 33 0 chr1 176477458 176477760 -66186593 + AluSx SINE Alu 1 312 0 1581 163 42 17 chr1 176478051 176478340 -66186013 + AluJo SINE Alu 1 296 -16 204 354 0 0 chr1 176478432 176478511 -66185842 - L2 LINE L2 -8 3305 3227 400 231 192 0 chr1 176478594 176478738 -66185615 + MER5A DNA MER1_type 2 189 0 257 228 263 0 chr1 176479426 176479540 -66184813 + MIR3 SINE MIR 58 201 -7 1431 57 0 0 chr1 176479652 176479827 -66184526 + AluY SINE Alu 127 301 -10 1779 148 332 33 chr1 176480024 176480503 -66183850 - LTR29 LTR ERV1 0 622 1 21 0 0 0 chr1 176480533 176480554 -66183799 + AT_rich Low_complexity Low_complexity 1 21 0 859 303 54 82 chr1 176480632 176481166 -66183187 - MLT1L LTR MaLR -4 611 93 225 0 0 0 chr1 176481189 176481214 -66183139 + (A)n Simple_repeat Simple_repeat 1 25 0 1272 198 4 12 chr1 176481225 176481468 -66182885 + AluJo SINE Alu 24 264 -48 225 0 0 0 chr1 176481475 176481500 -66182853 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 450 267 9 0 chr1 176481543 176481659 -66182694 - MIR SINE MIR -93 169 53 495 318 53 12 chr1 176482025 176482195 -66182158 + MIR SINE MIR 20 196 -66 2208 153 26 85 chr1 176482504 176483000 -66181353 + MLT1C LTR MaLR 1 467 0 435 270 83 83 chr1 176483193 176483664 -66180689 - L1MEd LINE L1 -5647 472 2 1601 135 135 8 chr1 176484693 176484952 -66179401 - AluSg1 SINE Alu -17 292 1 2170 114 0 3 chr1 176485783 176486080 -66178273 + AluSx SINE Alu 1 296 -16 1655 186 36 0 chr1 176486108 176486388 -66177965 + AluJb SINE Alu 1 290 -22 2162 108 40 0 chr1 176487158 176487455 -66176898 - AluSx SINE Alu -3 309 1 201 196 20 0 chr1 176487922 176487973 -66176380 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 494 300 17 48 chr1 176487992 176488222 -66176131 - MIR SINE MIR -8 254 32 4086 179 25 5 chr1 176488842 176489673 -66174680 + L1 LINE L1 3789 4636 -1510 775 172 0 16 chr1 176489677 176489805 -66174548 + AluJo/FLAM SINE Alu 1 126 -186 2284 98 0 30 chr1 176489805 176490110 -66174243 - AluSq SINE Alu -17 296 1 5808 146 28 14 chr1 176490128 176490755 -66173598 + L1PA16 LINE L1 4630 5247 -919 2218 107 10 10 chr1 176490755 176491053 -66173300 + AluSx SINE Alu 1 298 -14 5808 146 28 14 chr1 176491053 176491905 -66172448 + L1PA16 LINE L1 5247 6145 -21 260 287 125 37 chr1 176492244 176492380 -66171973 - MIR SINE MIR -112 150 3 767 266 49 0 chr1 176493370 176493596 -66170757 + L2 LINE L2 1740 1976 -1338 1157 272 90 60 chr1 176493721 176493971 -66170382 - MER20B DNA MER1_type -267 516 275 1642 178 0 11 chr1 176493971 176494258 -66170095 + AluSx SINE Alu 21 304 -8 1157 272 90 60 chr1 176494258 176494481 -66169872 - MER20B DNA MER1_type -508 275 25 1619 233 36 18 chr1 176494481 176494931 -66169422 + LTR40b LTR ERVL 1 458 -4 1157 272 90 60 chr1 176494931 176494956 -66169397 - MER20B DNA MER1_type -758 25 2 246 222 94 43 chr1 176494960 176495077 -66169276 + L2 LINE L2 2217 2339 -975 23 33 0 0 chr1 176496899 176496929 -66167424 + AT_rich Low_complexity Low_complexity 1 30 0 1714 160 24 24 chr1 176497318 176497612 -66166741 - AluJb SINE Alu -18 294 1 2402 100 0 0 chr1 176498417 176498727 -66165626 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr1 176498781 176498803 -66165550 + AT_rich Low_complexity Low_complexity 1 22 0 189 269 62 115 chr1 176498892 176499022 -66165331 - MIR SINE MIR -139 123 1 2076 62 74 0 chr1 176499056 176499314 -66165039 - AluY SINE Alu -11 300 24 340 316 86 49 chr1 176499775 176500101 -66164252 + L1M4 LINE L1 2120 2457 -3689 25 31 0 0 chr1 176500237 176500269 -66164084 + AT_rich Low_complexity Low_complexity 1 32 0 312 322 63 7 chr1 176500413 176500556 -66163797 + L1M4 LINE L1 2853 3003 -3143 947 200 29 24 chr1 176500677 176500882 -66163471 - MER3 DNA MER1_type -2 207 2 358 336 67 45 chr1 176500915 176501290 -66163063 - ERVL LTR ERVL -4532 1232 850 2090 128 7 0 chr1 176501450 176501755 -66162598 + AluSx SINE Alu 3 309 0 1281 151 0 41 chr1 176502056 176502274 -66162079 + MER3 DNA MER1_type 1 209 0 1050 273 122 29 chr1 176502568 176503011 -66161342 - LTR33 LTR ERVL -30 491 8 219 309 25 37 chr1 176504610 176504691 -66159662 - MIR3 SINE MIR -126 82 3 345 180 58 72 chr1 176504709 176504827 -66159526 + L1ME4a LINE L1 5985 6102 -19 768 289 78 46 chr1 176504827 176505263 -66159090 - MLT1J2 LTR MaLR 0 450 1 345 180 58 72 chr1 176505263 176505283 -66159070 + L1ME4a LINE L1 6102 6121 0 3200 149 26 36 chr1 176505440 176505889 -66158464 - MER7C DNA MER2_type -2426 602 159 3931 133 27 2 chr1 176505889 176506477 -66157876 - LTR26 LTR ERV1 0 603 1 3200 149 26 36 chr1 176506477 176506604 -66157749 - MER7C DNA MER2_type -2869 159 32 1003 194 78 0 chr1 176507040 176507220 -66157133 - MSTC LTR MaLR -2 426 233 2276 104 7 3 chr1 176507238 176507537 -66156816 - AluSx SINE Alu -12 300 1 3333 170 11 5 chr1 176507542 176508177 -66156176 - L1 LINE L1 -1093 5053 4415 2485 137 48 135 chr1 176508175 176508624 -66155729 + L1MA8 LINE L1 5284 5742 -549 * 514 123 0 0 chr1 176508624 176508697 -66155656 + AluJ/FLAM SINE Alu 2 74 -238 2485 137 48 135 chr1 176508697 176508805 -66155548 + L1MA8 LINE L1 5742 5858 -433 2108 123 7 10 chr1 176508806 176509115 -66155238 + AluSx SINE Alu 1 308 -4 1537 173 48 30 chr1 176509133 176509463 -66154890 + MER44D DNA MER2_type 1 606 -3 463 100 14 0 chr1 176509496 176509566 -66154787 + MER41B LTR ERV1 479 549 -86 25 31 0 0 chr1 176509566 176509598 -66154755 + AT_rich Low_complexity Low_complexity 1 32 0 1632 160 39 7 chr1 176509600 176509882 -66154471 + AluJb SINE Alu 1 291 -21 2039 122 21 0 chr1 176510357 176510643 -66153710 - AluSg SINE Alu -18 292 1 243 286 43 43 chr1 176511739 176511868 -66152485 - MIR SINE MIR -78 130 2 2138 121 0 0 chr1 176511934 176512306 -66152047 + AluSx SINE Alu 1 372 0 194 269 39 13 chr1 176513714 176513792 -66150561 + MIR SINE MIR 96 175 -87 23 54 0 0 chr1 176514333 176514370 -66149983 + AT_rich Low_complexity Low_complexity 1 37 0 2170 76 3 59 chr1 176514653 176514956 -66149397 + AluSg SINE Alu 1 286 -24 463 300 85 28 chr1 176516026 176516273 -66148080 - MIR SINE MIR 0 262 2 249 33 0 0 chr1 176516661 176516691 -66147662 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 279 245 98 29 chr1 176516924 176517026 -66147327 - MIR3 SINE MIR -12 196 88 23 0 0 0 chr1 176517749 176517772 -66146581 + GC_rich Low_complexity Low_complexity 1 23 0 620 233 25 0 chr1 176518560 176518680 -66145673 - MLT1F1 LTR MaLR -444 123 1 1649 173 54 0 chr1 176518793 176519071 -66145282 + AluJb SINE Alu 1 293 -19 2281 97 3 44 chr1 176519072 176519391 -66144962 + AluSx SINE Alu 1 306 -6 209 248 10 69 chr1 176519646 176519747 -66144606 + GA-rich Low_complexity Low_complexity 6 100 0 2281 86 28 0 chr1 176520242 176520532 -66143821 - AluSq SINE Alu -15 298 1 862 278 73 10 chr1 176520813 176521126 -66143227 - L3 LINE CR1 -97 1480 1148 1540 155 121 0 chr1 176521127 176521391 -66142962 + AluJo SINE Alu 3 298 -14 330 325 127 55 chr1 176521782 176522383 -66141970 - L3 LINE CR1 -712 865 222 2123 135 6 3 chr1 176522413 176522724 -66141629 + AluJb SINE Alu 1 312 0 961 178 0 8 chr1 176523855 176524069 -66140284 + AluJb SINE Alu 1 282 -30 463 210 20 150 chr1 176524136 176524211 -66140142 - MIR SINE MIR -62 200 117 438 20 0 0 chr1 176524211 176524262 -66140091 + (TG)n Simple_repeat Simple_repeat 2 52 0 1895 154 14 0 chr1 176524262 176524542 -66139811 - AluSx SINE Alu -28 284 1 463 210 20 150 chr1 176524542 176524665 -66139688 - MIR SINE MIR -143 119 27 1389 195 96 0 chr1 176524854 176524959 -66139394 + AluJo SINE Alu 13 107 -205 288 0 0 0 chr1 176524959 176524991 -66139362 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1389 195 96 0 chr1 176524991 176525157 -66139196 + AluJo SINE Alu 107 310 -2 224 286 98 27 chr1 176527162 176527274 -66137079 - L2 LINE L2 -13 3259 3140 180 231 96 0 chr1 176527324 176527376 -66136977 + MIR SINE MIR 90 146 -62 219 176 54 0 chr1 176529947 176530021 -66134332 + (TA)n Simple_repeat Simple_repeat 2 79 0 231 261 109 0 chr1 176530162 176530254 -66134099 - L2 LINE L2 -9 3263 3162 1929 112 6 61 chr1 176533925 176534237 -66130116 - AluSx SINE Alu -17 295 1 250 306 14 14 chr1 176534396 176534468 -66129885 + L2 LINE L2 3158 3229 -43 1373 183 70 43 chr1 176534609 176534910 -66129443 + AluJo SINE Alu 1 309 -3 327 137 20 0 chr1 176535058 176535109 -66129244 + Alu SINE Alu 2 53 -249 468 132 0 0 chr1 176535210 176535278 -66129075 - AluS SINE Alu -242 69 2 638 258 68 145 chr1 176535545 176535999 -66128354 + L2 LINE L2 2013 2500 -814 1603 208 6 13 chr1 176535999 176536312 -66128041 - AluJo SINE Alu -1 311 1 638 258 68 145 chr1 176536312 176536665 -66127688 + L2 LINE L2 2500 2728 -586 2152 131 0 3 chr1 176536665 176536963 -66127390 - AluSx SINE Alu -15 297 1 638 258 68 145 chr1 176536963 176537176 -66127177 + L2 LINE L2 2728 2956 -358 287 234 122 0 chr1 176537480 176537587 -66126766 + MIR SINE MIR 87 206 -56 2249 120 3 0 chr1 176537823 176538131 -66126222 - AluSx SINE Alu -3 309 1 1848 166 3 31 chr1 176538316 176538659 -66125694 - AluJo SINE Alu 0 312 1 963 282 98 13 chr1 176538898 176539279 -66125074 + L1MC4a LINE L1 5511 5740 -422 232 233 68 0 chr1 176539539 176539612 -66124741 + MIR SINE MIR 89 166 -96 1500 119 183 0 chr1 176540203 176540454 -66123899 + AluSg SINE Alu 2 298 -2 290 65 0 22 chr1 176540871 176540917 -66123436 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 2024 137 17 0 chr1 176540917 176541217 -66123136 - AluSq SINE Alu 0 313 9 1258 150 105 149 chr1 176541217 176541639 -66122714 + MLT2D LTR ERVL 60 464 0 21 36 0 0 chr1 176541746 176541774 -66122579 + AT_rich Low_complexity Low_complexity 1 28 0 1877 165 0 0 chr1 176541866 176542157 -66122196 - AluJb SINE Alu -21 291 1 458 280 42 18 chr1 176542215 176542383 -66121970 - MIR SINE MIR -71 191 20 207 0 0 0 chr1 176542534 176542557 -66121796 + (TA)n Simple_repeat Simple_repeat 1 23 0 800 166 14 35 chr1 176542603 176542748 -66121605 - FAM SINE Alu -23 162 21 304 289 250 19 chr1 176543184 176543340 -66121013 + MIR SINE MIR 15 206 -56 370 228 13 0 chr1 176543389 176543468 -66120885 + MIR3 SINE MIR 76 155 -53 1501 155 8 8 chr1 176543683 176543934 -66120419 + AluJo SINE Alu 1 251 -61 369 279 29 29 chr1 176545289 176545425 -66118928 - MLT1J LTR MaLR -152 359 224 422 259 123 38 chr1 176545503 176545715 -66118638 - MLT1J LTR MaLR -281 230 1 2323 103 7 3 chr1 176545729 176546039 -66118314 - AluSx SINE Alu -1 311 1 772 263 106 0 chr1 176546137 176546373 -66117980 + MIR SINE MIR 2 262 0 365 302 94 23 chr1 176546860 176547106 -66117247 - L1ME LINE L1 -336 5826 5567 229 294 101 8 chr1 176547286 176547405 -66116948 - L3 LINE CR1 -183 1394 1265 2305 78 7 3 chr1 176547577 176547972 -66116381 - AluSq SINE Alu 0 396 1 1223 191 164 0 chr1 176548377 176548633 -66115720 - AluSx SINE Alu -10 302 5 58 0 0 0 chr1 176548636 176548694 -66115659 + AT_rich Low_complexity Low_complexity 1 58 0 231 213 0 0 chr1 176548766 176548813 -66115540 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 21 57 0 0 chr1 176548816 176548851 -66115502 + AT_rich Low_complexity Low_complexity 1 35 0 38 0 0 0 chr1 176548877 176548915 -66115438 + AT_rich Low_complexity Low_complexity 1 38 0 1943 90 0 56 chr1 176549043 176549331 -66115022 - AluSx SINE Alu -40 272 1 302 79 0 0 chr1 176549495 176549533 -66114820 - LTR23 LTR ERV1 -78 359 322 736 161 46 0 chr1 176549666 176549796 -66114557 - MER20 DNA MER1_type -2 217 82 982 173 5 32 chr1 176549803 176549988 -66114365 - AluJb SINE Alu -70 242 63 886 177 0 0 chr1 176550079 176550220 -66114133 - AluJo SINE Alu -171 141 1 309 260 27 0 chr1 176550236 176550309 -66114044 - MER20 DNA MER1_type -144 75 1 243 316 35 9 chr1 176551108 176551222 -66113131 + L2 LINE L2 3180 3296 -17 189 74 0 0 chr1 176551385 176551412 -66112941 + (CAT)n Simple_repeat Simple_repeat 3 29 0 389 299 121 24 chr1 176551430 176551637 -66112716 - MIR SINE MIR -30 232 6 330 307 50 0 chr1 176552111 176552212 -66112141 + MER94 DNA DNA 29 134 0 2222 128 0 0 chr1 176552278 176552582 -66111771 - AluSx SINE Alu -8 304 1 320 272 43 22 chr1 176552640 176552732 -66111621 + MIR SINE MIR 73 166 -96 933 275 35 50 chr1 176554100 176554262 -66110091 - L2 LINE L2 -1 3312 3149 2148 144 0 0 chr1 176554262 176554567 -66109786 - AluSx SINE Alu -7 305 1 933 275 35 50 chr1 176554567 176555049 -66109304 - L2 LINE L2 -164 3149 2686 1606 163 0 0 chr1 176555131 176555377 -66108976 + AluJb SINE Alu 1 246 -66 926 147 11 68 chr1 176556218 176556395 -66107958 + FRAM SINE Alu 1 161 -15 774 123 29 65 chr1 176556397 176556535 -66107818 + FLAM_C SINE Alu 1 133 0 26 0 0 0 chr1 176556535 176556561 -66107792 + AT_rich Low_complexity Low_complexity 1 26 0 373 299 72 45 chr1 176556689 176556910 -66107443 + HAL1b LINE L1 4 230 -1118 699 174 56 14 chr1 176556910 176557054 -66107299 + AluJb SINE Alu 163 312 0 908 73 0 0 chr1 176557089 176557198 -66107155 - AluSp/q SINE Alu -22 291 183 611 274 107 57 chr1 176557325 176557803 -66106550 + HAL1b LINE L1 308 809 -539 333 200 9 57 chr1 176558003 176558108 -66106245 + L1MC4a LINE L1 6557 6656 -1152 324 257 0 0 chr1 176558108 176558182 -66106171 + L1MC5 LINE L1 6764 6837 -1124 1364 218 80 55 chr1 176558194 176558251 -66106102 - MLT1C LTR MaLR -7 460 406 2065 136 10 0 chr1 176558251 176558559 -66105794 + AluSx SINE Alu 1 311 -1 1364 218 80 55 chr1 176558559 176558771 -66105582 - MLT1C LTR MaLR -61 406 170 1994 149 3 3 chr1 176558771 176559067 -66105286 - AluSx SINE Alu -16 296 1 1364 218 80 55 chr1 176559067 176559202 -66105151 - MLT1C LTR MaLR -297 170 40 683 117 0 0 chr1 176609639 176609742 -66054611 + L1PA13 LINE L1 6060 6162 -1 1937 133 16 41 chr1 176610150 176610467 -66053886 - AluJo SINE Alu -3 309 1 2171 120 3 0 chr1 176610850 176611150 -66053203 - AluSx SINE Alu -11 301 1 794 181 60 0 chr1 176611298 176611464 -66052889 + MER58 DNA MER1_type 10 185 -156 562 180 6 120 chr1 176611460 176611542 -66052811 + MER58 DNA MER1_type 2270 2360 -60 * 2341 86 36 3 chr1 176611542 176611844 -66052509 - AluSp SINE Alu -1 312 1 562 180 6 120 chr1 176611844 176611891 -66052462 + MER58 DNA MER1_type 2360 2379 -41 2279 89 3 32 chr1 176611891 176612207 -66052146 - AluSx SINE Alu -5 307 1 562 180 6 120 chr1 176612207 176612243 -66052110 + MER58 DNA MER1_type 2379 2417 -3 1115 165 30 5 chr1 176612428 176612628 -66051725 + MER3 DNA MER1_type 1 205 -4 229 195 0 0 chr1 176612783 176612824 -66051529 - L2 LINE L2 -10 3303 3263 1484 201 6 16 chr1 176612962 176613275 -66051078 - AluJb SINE Alu -2 310 1 252 312 148 11 chr1 176614878 176615067 -66049286 + L3b LINE CR1 1174 1388 -195 477 328 11 6 chr1 176615482 176615656 -66048697 + MIR3 SINE MIR 27 201 -7 541 296 34 26 chr1 176617398 176617631 -66046722 - L2 LINE L2 0 3313 3079 221 171 24 0 chr1 176617744 176617785 -66046568 + (TG)n Simple_repeat Simple_repeat 1 42 0 1325 109 45 0 chr1 176618360 176618561 -66045792 + MSTC LTR MaLR 1 210 -218 790 155 0 40 chr1 176618561 176618709 -66045644 + FLAM_C SINE Alu 2 143 0 1298 197 0 4 chr1 176618709 176618937 -66045416 + MSTC LTR MaLR 197 423 -5 354 61 0 0 chr1 176619443 176619492 -66044861 + (TTATA)n Simple_repeat Simple_repeat 1 49 0 246 103 26 0 chr1 176619616 176619655 -66044698 - MSTC LTR MaLR -388 40 1 180 83 62 21 chr1 176619847 176619895 -66044458 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 325 309 8 32 chr1 176620142 176620268 -66044085 + MIR3 SINE MIR 70 192 -16 318 115 0 0 chr1 176620809 176620861 -66043492 + (GGGA)n Simple_repeat Simple_repeat 2 53 0 316 0 0 0 chr1 176621153 176621188 -66043165 + (TTTG)n Simple_repeat Simple_repeat 2 172 0 2119 111 0 0 chr1 176621188 176621468 -66042885 - AluSg1 SINE Alu -1 314 1 180 0 0 0 chr1 176621491 176621511 -66042842 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2092 139 27 21 chr1 176622172 176622545 -66041808 + THE1C LTR MaLR 1 375 0 983 166 74 0 chr1 176622983 176623146 -66041207 + FAM SINE Alu 1 175 0 191 297 16 16 chr1 176624031 176624095 -66040258 - L2 LINE L2 -56 3216 3153 2142 156 56 68 chr1 176624229 176624406 -66039947 - L1MD1 LINE L1 0 6242 6064 975 176 6 0 chr1 176624406 176624571 -66039782 + FRAM SINE Alu 1 166 0 2142 156 56 68 chr1 176624571 176624861 -66039492 - L1MD1 LINE L1 -178 6064 5781 611 281 199 19 chr1 176624868 176625430 -66038923 - L3 LINE CR1 -552 1025 304 232 26 0 128 chr1 176625879 176625918 -66038435 - HSMAR1 DNA Mariner -1253 34 1 358 259 312 5 chr1 176625968 176626157 -66038196 + MIR SINE MIR 15 261 -1 1888 174 0 3 chr1 176626224 176626534 -66037819 - AluJb SINE Alu -3 309 1 2371 60 0 3 chr1 176626537 176626858 -66037495 - AluY SINE Alu 0 320 1 468 217 72 134 chr1 176627638 176627928 -66036425 + L2 LINE L2 3036 3307 -6 3835 143 58 19 chr1 176628101 176628947 -66035406 + L1MA4 LINE L1 4675 5583 -717 2018 117 7 17 chr1 176628947 176629237 -66035116 + AluSx SINE Alu 1 287 -25 3835 143 58 19 chr1 176629237 176629576 -66034777 + L1MA4 LINE L1 5583 5907 -393 2265 94 0 3 chr1 176629814 176630111 -66034242 + AluSc SINE Alu 1 296 -13 189 195 0 0 chr1 176630371 176630412 -66033941 + (CACCAT)n Simple_repeat Simple_repeat 4 44 0 205 281 16 0 chr1 176631344 176631408 -66032945 - MER5B DNA MER1_type 0 178 114 3617 136 30 3 chr1 176631410 176632119 -66032234 + L1MA4 LINE L1 4754 5475 -743 855 206 6 6 chr1 176632119 176632294 -66032059 + AluJo SINE Alu 121 295 -17 1661 160 44 0 chr1 176632298 176632573 -66031780 + AluJb SINE Alu 3 289 -23 21 0 0 0 chr1 176632573 176632594 -66031759 + AT_rich Low_complexity Low_complexity 1 21 0 4862 138 24 4 chr1 176632607 176633398 -66030955 + L1MA4 LINE L1 5473 6279 -21 4105 131 45 30 chr1 176633414 176634067 -66030286 + MER50 LTR ERV1 7 672 -62 2370 99 0 0 chr1 176634067 176634371 -66029982 + AluSg1 SINE Alu 1 304 -5 4105 131 45 30 chr1 176634371 176634406 -66029947 + MER50 LTR ERV1 672 705 -29 374 328 0 8 chr1 176634441 176634560 -66029793 + MER5B DNA MER1_type 59 176 -2 1964 134 3 3 chr1 176634994 176635278 -66029075 + AluSx SINE Alu 3 286 -26 919 326 47 40 chr1 176635672 176636172 -66028181 - ERVL LTR ERVL -1772 3882 3374 1766 150 27 14 chr1 176636172 176636466 -66027887 + AluJb SINE Alu 1 298 -14 919 326 47 40 chr1 176636466 176636593 -66027760 - ERVL LTR ERVL -2280 3374 3249 2311 82 4 0 chr1 176636886 176637190 -66027163 + AluSg SINE Alu 1 305 0 663 198 27 11 chr1 176638337 176638604 -66025749 + CT-rich Low_complexity Low_complexity 1 271 0 2281 100 3 7 chr1 176638644 176638954 -66025399 + AluSg SINE Alu 1 309 -1 1803 104 62 85 chr1 176638969 176639276 -66025077 + AluSx SINE Alu 5 304 -8 249 211 35 123 chr1 176640467 176640581 -66023772 + L2 LINE L2 3210 3313 0 374 161 18 0 chr1 176641052 176641131 -66023222 - AluS SINE Alu -245 63 1 580 121 0 0 chr1 176641369 176641452 -66022901 - AluSp SINE Alu -12 301 219 285 206 42 12 chr1 176642164 176642329 -66022024 + (TG)n Simple_repeat Simple_repeat 1 170 0 422 151 26 20 chr1 176642412 176642564 -66021789 + (TG)n Simple_repeat Simple_repeat 2 154 0 355 154 0 41 chr1 176642577 176642700 -66021653 + (TG)n Simple_repeat Simple_repeat 1 118 0 264 314 122 19 chr1 176643453 176643609 -66020744 + MIR SINE MIR 11 182 -80 12773 112 11 55 chr1 176644407 176644848 -66019505 - L1P3 LINE L1 -3859 2602 2143 3900 31 2 0 chr1 176644848 176645300 -66019053 - L1PA3 LINE L1 -1 6154 5702 12773 112 11 55 chr1 176645300 176647464 -66016889 - L1P3 LINE L1 -4318 2143 7 1190 62 0 14 chr1 176647464 176647609 -66016744 - AluSq/x SINE Alu -170 143 1 237 65 0 0 chr1 176648030 176648061 -66016292 + (T)n Simple_repeat Simple_repeat 1 31 0 958 135 0 0 chr1 176648061 176648194 -66016159 - AluSq/x SINE Alu -179 133 1 506 284 57 6 chr1 176648337 176648513 -66015840 - MIR3 SINE MIR -1 207 23 1760 68 9 5 chr1 176648897 176649119 -66015234 - AluSp SINE Alu -90 223 1 908 97 18 177 chr1 176649301 176649527 -66014826 + L1MC3 LINE L1 6781 6970 -815 2196 139 0 13 chr1 176649556 176649872 -66014481 + AluSx SINE Alu 1 312 0 798 288 53 19 chr1 176650111 176650495 -66013858 - L2 LINE L2 -170 3143 2743 279 318 37 25 chr1 176650878 176651043 -66013310 - MER5B DNA MER1_type -12 177 7 1701 168 100 40 chr1 176651619 176652019 -66012334 + MSTC LTR MaLR 5 428 0 543 303 79 21 chr1 176652031 176652272 -66012081 + MIR SINE MIR 8 262 0 230 267 133 9 chr1 176652287 176652392 -66011961 + MER104 DNA Tc2 58 175 -5 1632 168 0 34 chr1 176652863 176653008 -66011345 + AluJo SINE Alu 1 149 -156 2060 128 10 0 chr1 176653008 176653298 -66011055 + AluSx SINE Alu 1 293 -19 1632 168 0 34 chr1 176653298 176653467 -66010886 + AluJo SINE Alu 149 305 0 791 280 107 25 chr1 176653594 176653987 -66010366 - L2 LINE L2 -1 3312 2888 1804 174 7 0 chr1 176654760 176655048 -66009305 + AluSx SINE Alu 2 291 -21 318 26 0 0 chr1 176655050 176655089 -66009264 + (TG)n Simple_repeat Simple_repeat 2 40 0 1941 148 74 6 chr1 176655222 176655559 -66008794 + MER46B DNA MER2_type 2 236 0 188 336 131 19 chr1 176655578 176655685 -66008668 + L2 LINE L2 2917 3035 -237 2236 117 0 0 chr1 176655998 176656298 -66008055 - AluY SINE Alu -10 301 2 405 239 126 31 chr1 176656895 176657054 -66007299 + MIR3 SINE MIR 3 176 -32 180 267 0 0 chr1 176657081 176657141 -66007212 + GA-rich Low_complexity Low_complexity 3 62 0 642 230 158 36 chr1 176657167 176657526 -66006827 - MLT1J LTR MaLR -9 502 3 24 0 0 0 chr1 176657810 176657834 -66006519 + AT_rich Low_complexity Low_complexity 1 24 0 1076 205 218 24 chr1 176658538 176658909 -66005444 - MLT1J1 LTR MaLR 0 446 4 291 287 83 45 chr1 176660434 176660591 -66003762 - MIR SINE MIR -80 182 20 257 264 100 18 chr1 176660646 176660756 -66003597 + MIR3 SINE MIR 85 203 -5 479 279 159 22 chr1 176660824 176661050 -66003303 - MIR SINE MIR -3 259 3 329 271 10 0 chr1 176662355 176662451 -66001902 - MER94 DNA DNA -34 100 4 653 216 99 18 chr1 176664029 176664200 -66000153 + MER5A DNA MER1_type 5 189 0 1304 183 32 45 chr1 176664763 176665075 -65999278 + MER33 DNA MER1_type 17 324 0 503 283 112 14 chr1 176665169 176665392 -65998961 + MIR SINE MIR 3 247 -15 202 337 22 0 chr1 176665446 176665535 -65998818 + L3b LINE CR1 1427 1517 -66 210 171 0 0 chr1 176666404 176666445 -65997908 + (CAT)n Simple_repeat Simple_repeat 2 42 0 503 288 38 0 chr1 176666455 176666615 -65997738 - MIR SINE MIR -11 251 86 1540 244 169 33 chr1 176666750 176667373 -65996980 - MER20B DNA MER1_type -32 751 32 457 221 22 77 chr1 176667373 176667554 -65996799 - MER5B DNA MER1_type -4 174 4 1540 244 169 33 chr1 176667554 176667591 -65996762 - MER20B DNA MER1_type -751 32 1 201 239 113 0 chr1 176668348 176668419 -65995934 - MIR SINE MIR -30 232 154 2085 123 0 13 chr1 176668639 176668940 -65995413 - AluSx SINE Alu -15 297 1 803 190 16 5 chr1 176669189 176669373 -65994980 - L1M4 LINE L1 -968 5178 4993 1930 173 0 0 chr1 176670072 176670372 -65993981 - AluJo SINE Alu -12 300 1 180 0 0 0 chr1 176671281 176671301 -65993052 + (T)n Simple_repeat Simple_repeat 1 20 0 812 180 0 43 chr1 176671774 176671913 -65992440 - FLAM_C SINE Alu 0 133 1 319 254 169 8 chr1 176673697 176673827 -65990526 - L2 LINE L2 0 3313 3163 355 206 29 0 chr1 176674009 176674077 -65990276 + MER63A DNA MER1_type 98 167 -43 1278 193 45 4 chr1 176674172 176674415 -65989938 + MLT1D LTR MaLR 253 505 0 640 262 86 49 chr1 176674426 176674670 -65989683 + MLT1J2 LTR MaLR 67 319 -131 305 262 45 110 chr1 176674670 176674952 -65989401 - L1MC/D LINE L1 -302 5819 5593 290 317 15 18 chr1 176674952 176675166 -65989187 + L2 LINE L2 2939 3214 -99 320 111 19 0 chr1 176675190 176675244 -65989109 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 24 67 0 0 chr1 176675740 176675785 -65988568 + AT_rich Low_complexity Low_complexity 1 45 0 1611 180 7 7 chr1 176675853 176676148 -65988205 - AluJo SINE Alu -5 307 13 882 232 77 41 chr1 176676688 176676802 -65987551 + MLT1B LTR MaLR 1 109 -281 2141 121 69 36 chr1 176676802 176677165 -65987188 + THE1C LTR MaLR 1 375 0 882 232 77 41 chr1 176677165 176677494 -65986859 + MLT1B LTR MaLR 109 390 0 335 287 41 33 chr1 176677590 176677712 -65986641 + L2 LINE L2 2684 2806 -508 320 222 0 67 chr1 176678096 176678141 -65986212 + HsTC2 DNA Tc2 4 42 -1856 909 249 96 72 chr1 176678141 176678587 -65985766 + LTR16A1 LTR ERVL 1 457 0 320 222 0 67 chr1 176678587 176678631 -65985722 + HsTC2 DNA Tc2 42 87 -1811 2306 97 3 3 chr1 176678942 176679242 -65985111 + AluSg SINE Alu 1 300 -10 818 260 65 9 chr1 176679744 176679975 -65984378 - MIR SINE MIR -3 259 16 244 340 60 0 chr1 176680543 176680643 -65983710 - L2 LINE L2 -22 3291 3186 1698 117 31 0 chr1 176681363 176681586 -65982767 - MER30 DNA MER1_type 0 230 1 210 37 0 0 chr1 176681760 176681787 -65982566 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1888 154 21 0 chr1 176681804 176682084 -65982269 + AluJb SINE Alu 1 286 -26 252 122 0 0 chr1 176682086 176682127 -65982226 + (GGGAGA)n Simple_repeat Simple_repeat 3 43 0 2011 177 8 30 chr1 176682506 176682879 -65981474 - MLT1A1 LTR MaLR 0 365 1 339 271 24 0 chr1 176682894 176682979 -65981374 + L2 LINE L2 3184 3270 -2 1084 193 70 116 chr1 176683290 176683678 -65980675 + MLT1A2 LTR MaLR 1 370 -4 895 220 12 7 chr1 176684280 176684637 -65979716 + MSTD LTR MaLR 4 396 0 1115 257 41 27 chr1 176684651 176684943 -65979410 + MLT2E LTR ERVL 19 314 -314 548 179 52 45 chr1 176685013 176685147 -65979206 + MLT2E LTR ERVL 474 608 -20 302 292 21 0 chr1 176685223 176685319 -65979034 + MIR SINE MIR 32 129 -133 1838 142 61 7 chr1 176685332 176685627 -65978726 - AluJb SINE Alu -1 311 1 245 29 29 0 chr1 176685655 176685689 -65978664 + (TA)n Simple_repeat Simple_repeat 2 36 0 192 40 0 0 chr1 176685688 176685713 -65978640 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 343 230 62 44 chr1 176685756 176685869 -65978484 + MIR SINE MIR 148 262 0 214 319 57 35 chr1 176686677 176686818 -65977535 + L3 LINE CR1 1149 1292 -285 181 289 0 0 chr1 176686862 176686900 -65977453 + L3 LINE CR1 1437 1474 -103 220 225 0 25 chr1 176686900 176686980 -65977373 + GA-rich Low_complexity Low_complexity 3 80 0 347 222 0 56 chr1 176686983 176687073 -65977280 - MIR SINE MIR -9 253 169 465 291 8 8 chr1 176688307 176688424 -65975929 - MIR SINE MIR -138 124 8 247 271 82 24 chr1 176688549 176688634 -65975719 - L2 LINE L2 -7 3265 3176 214 200 93 53 chr1 176688860 176688935 -65975418 + MIR3 SINE MIR 11 88 -120 229 214 71 14 chr1 176689247 176689317 -65975036 + L1MC4 LINE L1 6636 6709 -1333 651 305 21 0 chr1 176689326 176689513 -65974840 - MIR SINE MIR -11 251 61 524 117 26 0 chr1 176689789 176689866 -65974487 - MADE1 DNA Mariner -1 79 1 213 304 25 13 chr1 176690291 176690370 -65973983 + MIR3 SINE MIR 83 162 -46 2024 118 0 0 chr1 176690465 176690737 -65973616 - AluSx SINE Alu -9 303 32 1310 234 79 9 chr1 176690870 176691323 -65973030 + L1ME2 LINE L1 5009 5487 -679 2248 169 119 26 chr1 176691323 176691673 -65972680 - MLT1D LTR MaLR 0 505 100 1530 166 68 20 chr1 176691673 176691968 -65972385 + AluJo SINE Alu 1 309 -3 2248 169 119 26 chr1 176691968 176692079 -65972274 - MLT1D LTR MaLR -405 100 1 1310 234 79 9 chr1 176692079 176692103 -65972250 + L1ME2 LINE L1 5487 5508 -658 1442 210 50 39 chr1 176692103 176692521 -65971832 + MLT2B1 LTR ERVL 1 414 0 1961 214 131 27 chr1 176692521 176693109 -65971244 + L1ME2 LINE L1 5507 6155 -9 220 294 54 22 chr1 176693171 176693263 -65971090 - L3b LINE CR1 -193 1390 1296 3345 154 47 37 chr1 176693273 176693563 -65970790 + L1MA9 LINE L1 5659 5945 -367 1851 104 101 8 chr1 176693563 176693831 -65970522 + AluSx SINE Alu 1 293 -19 3345 154 47 37 chr1 176693831 176694183 -65970170 + L1MA9 LINE L1 5945 6307 -5 518 296 128 22 chr1 176694536 176694762 -65969591 - MIR SINE MIR -12 250 1 1948 160 7 0 chr1 176694867 176695161 -65969192 + AluJb SINE Alu 1 296 -16 2198 86 45 0 chr1 176695167 176695459 -65968894 + AluSc SINE Alu 1 305 -4 187 275 176 22 chr1 176695659 176695750 -65968603 - L2 LINE L2 0 3272 3168 864 163 0 22 chr1 176696504 176696639 -65967714 - FLAM_C SINE Alu 0 133 2 270 0 0 0 chr1 176696749 176696779 -65967574 + (A)n Simple_repeat Simple_repeat 1 30 0 392 240 76 99 chr1 176698370 176698541 -65965812 - MIR SINE MIR 0 262 96 928 188 87 34 chr1 176698553 176698761 -65965592 + MER20 DNA MER1_type 1 219 0 564 277 23 42 chr1 176698937 176699163 -65965190 + MLT1L LTR MaLR 288 615 0 1640 186 6 31 chr1 176699992 176700310 -65964043 - AluJb SINE Alu 0 312 3 364 250 0 0 chr1 176701124 176701200 -65963153 - MER112 DNA MER1_type -2 258 183 942 134 0 0 chr1 176701201 176701335 -65963018 + AluSg/x SINE Alu 161 294 -18 463 244 6 98 chr1 176701381 176701545 -65962808 - MER112 DNA MER1_type -111 149 1 287 85 0 51 chr1 176702021 176702080 -65962273 - L1MB3 LINE L1 0 6183 6128 2122 142 32 67 chr1 176702296 176702438 -65961915 - L1MB3 LINE L1 0 6183 6038 1949 168 0 0 chr1 176702438 176702748 -65961605 + AluJb SINE Alu 3 312 0 2122 142 32 67 chr1 176702748 176703036 -65961317 - L1MB3 LINE L1 -145 6038 5768 823 248 86 18 chr1 176703846 176704068 -65960285 - MIR SINE MIR -10 252 16 1767 161 47 0 chr1 176704501 176704780 -65959573 - AluJo SINE Alu -20 292 1 262 294 42 34 chr1 176705561 176705680 -65958673 + MER5A DNA MER1_type 29 148 -41 183 319 52 60 chr1 176706803 176706919 -65957434 + L2 LINE L2 2880 2994 -278 * 585 312 108 33 chr1 176706902 176707301 -65957052 + L2 LINE L2 2782 3224 -89 2120 175 70 3 chr1 176707301 176707672 -65956681 - MSTD LTR MaLR 0 396 1 585 312 108 33 chr1 176707672 176707761 -65956592 + L2 LINE L2 3224 3305 -8 344 314 36 117 chr1 176707772 176708081 -65956272 + L2 LINE L2 2987 3270 -2 486 198 22 0 chr1 176708385 176708476 -65955877 + MIR3 SINE MIR 107 199 -9 338 328 47 7 chr1 176708927 176709080 -65955273 + MIR SINE MIR 3 146 -62 22 0 0 0 chr1 176709136 176709158 -65955195 + AT_rich Low_complexity Low_complexity 1 22 0 9731 213 26 6 chr1 176709162 176709627 -65954726 + L1MB3 LINE L1 2576 3030 -3153 1932 149 0 45 chr1 176709627 176709936 -65954417 - AluSx SINE Alu -17 295 1 9731 213 26 6 chr1 176709936 176712979 -65951374 + L1MB3 LINE L1 3030 6174 -9 601 191 115 87 chr1 176713184 176713367 -65950986 + L1MD3 LINE L1 7730 7917 -78 993 193 8 84 chr1 176714355 176714593 -65949760 - MER58B DNA MER1_type -15 326 107 1143 188 118 11 chr1 176714633 176714920 -65949433 + MER33 DNA MER1_type 3 320 -4 273 316 37 15 chr1 176715260 176715396 -65948957 + MER5A DNA MER1_type 7 145 -44 * 374 273 26 21 chr1 176715287 176715412 -65948941 - MER5A DNA MER1_type -25 164 32 4671 55 3 6 chr1 176715412 176716053 -65948300 - L1PA7 LINE L1 0 6154 5469 2486 52 16 0 chr1 176716049 176716356 -65947997 - L1P3 LINE L1 -555 5599 5288 * 2241 104 3 0 chr1 176718043 176718342 -65946011 + AluSg SINE Alu 1 300 -10 2347 102 0 0 chr1 176718517 176718820 -65945533 - AluSg SINE Alu -6 304 2 1339 169 24 20 chr1 176718924 176719179 -65945174 - Tigger2 DNA MER2_type -1 2717 2462 3718 157 115 1 chr1 176719246 176719909 -65944444 - Tigger2 DNA MER2_type -1974 744 7 200 322 81 74 chr1 176719917 176720066 -65944287 + MIR SINE MIR 113 262 0 271 271 115 0 chr1 176721697 176721793 -65942560 - L2 LINE L2 -3 3310 3204 530 240 81 47 chr1 176722255 176722467 -65941886 + MIR SINE MIR 11 228 -34 689 255 18 6 chr1 176722960 176723162 -65941191 - MIR SINE MIR -1 261 58 2336 112 0 0 chr1 176723375 176723680 -65940673 - AluSx SINE Alu -7 305 1 307 243 0 14 chr1 176725066 176725140 -65939213 + MIR SINE MIR 74 146 -62 1958 143 3 32 chr1 176728424 176728563 -65935790 + AluSx SINE Alu 1 142 -170 2131 130 3 13 chr1 176728563 176728878 -65935475 + AluSx SINE Alu 1 312 0 1958 143 3 32 chr1 176728878 176729052 -65935301 + AluSx SINE Alu 142 305 -7 264 183 17 17 chr1 176729811 176729871 -65934482 - MER5B DNA MER1_type -3 175 116 388 333 16 0 chr1 176730000 176730123 -65934230 + MER117 DNA MER1_type 1 125 -72 2486 87 3 0 chr1 176730124 176730433 -65933920 + AluSg SINE Alu 1 310 0 755 250 48 16 chr1 176730489 176730737 -65933616 + MIR SINE MIR 7 262 0 222 306 92 0 chr1 176730968 176731066 -65933287 + L2 LINE L2 2870 2976 -296 383 305 0 0 chr1 176731082 176731187 -65933166 - L1M4 LINE L1 -2539 3607 3503 671 175 0 9 chr1 176731206 176731320 -65933033 - FLAM_C SINE Alu -29 114 2 2272 105 0 0 chr1 176732284 176732595 -65931758 - AluSx SINE Alu 0 311 1 627 166 228 37 chr1 176732895 176733136 -65931217 - MER5C DNA MER1_type 0 324 38 414 267 156 10 chr1 176734074 176734249 -65930104 + MIR SINE MIR 11 206 -56 1599 185 12 15 chr1 176734611 176734941 -65929412 - L1MB7 LINE L1 0 6184 5856 426 327 36 6 chr1 176736002 176736170 -65928183 - MIR3 SINE MIR -15 193 21 760 135 17 67 chr1 176736681 176736803 -65927550 - L1MB7 LINE L1 -69 6115 6003 2478 119 11 16 chr1 176736803 176737180 -65927173 - THE1C LTR MaLR 0 375 1 760 135 17 67 chr1 176737180 176737235 -65927118 - L1MB7 LINE L1 -181 6003 5947 2186 126 7 3 chr1 176738028 176738338 -65926015 + AluSp SINE Alu 1 311 -2 403 267 50 43 chr1 176739312 176739473 -65924880 + MER117 DNA MER1_type 16 177 -20 2092 104 0 0 chr1 176739586 176739854 -65924499 - AluSc SINE Alu -9 300 33 24 0 0 0 chr1 176739854 176739878 -65924475 + AT_rich Low_complexity Low_complexity 1 24 0 1922 112 0 4 chr1 176739883 176740150 -65924203 - AluY SINE Alu -5 306 41 2015 149 3 3 chr1 176740152 176740454 -65923899 - AluSx SINE Alu -10 302 1 235 259 223 42 chr1 176742825 176742972 -65921381 - MIR SINE MIR -57 151 19 237 167 8 222 chr1 176745131 176745257 -65919096 + L2 LINE L2 3196 3294 -19 6097 177 40 24 chr1 176745294 176746993 -65917360 - L1MA9 LINE L1 -38 6274 4604 2126 122 14 0 chr1 176746993 176747281 -65917072 + AluSx SINE Alu 1 292 -20 6097 177 40 24 chr1 176747281 176747359 -65916994 - L1MA9 LINE L1 -1708 4604 4529 1979 154 6 10 chr1 176747359 176747671 -65916682 - AluSx SINE Alu -1 311 1 6097 177 40 24 chr1 176747671 176748143 -65916210 - L1MA9 LINE L1 -1783 4529 3996 458 262 28 7 chr1 176748200 176748341 -65916012 - L1ME2 LINE L1 -1 6163 6020 402 296 91 76 chr1 176748878 176749327 -65915026 - L2 LINE L2 -5 3267 2812 203 288 0 88 chr1 176749577 176749657 -65914696 + L2 LINE L2 3200 3272 0 311 177 14 170 chr1 176749776 176749923 -65914430 - MER102a DNA MER1_type -15 315 192 2081 114 10 3 chr1 176751645 176751943 -65912410 - AluSg SINE Alu -10 300 1 365 171 8 0 chr1 176752615 176752732 -65911621 + (TA)n Simple_repeat Simple_repeat 1 118 0 812 188 47 0 chr1 176753594 176753764 -65910589 - L1MC3 LINE L1 -13 7772 7595 362 344 139 0 chr1 176754015 176754230 -65910123 + MIR SINE MIR 2 246 -16 1596 119 0 0 chr1 176754479 176754689 -65909664 + AluJb SINE Alu 85 294 -18 233 330 34 0 chr1 176755694 176755782 -65908571 - MIR SINE MIR -141 121 31 2256 111 16 0 chr1 176757806 176758112 -65906241 + AluSq SINE Alu 1 311 -2 423 267 53 0 chr1 176758161 176758311 -65906042 - MER103 DNA DNA -2 164 7 21 0 0 0 chr1 176758821 176758842 -65905511 + AT_rich Low_complexity Low_complexity 1 21 0 2222 118 0 16 chr1 176758843 176759147 -65905206 + AluSq SINE Alu 1 299 -14 2015 162 0 0 chr1 176759223 176759532 -65904821 + AluSx SINE Alu 1 309 -3 565 269 80 5 chr1 176759533 176759734 -65904619 + MIR SINE MIR 47 262 0 552 267 118 68 chr1 176761085 176761492 -65902861 - MLT1G1 LTR MaLR 0 595 184 1805 140 0 45 chr1 176761492 176761632 -65902721 - AluJb SINE Alu -39 273 151 2610 62 0 0 chr1 176761632 176761936 -65902417 - AluY SINE Alu -7 304 1 1805 140 0 45 chr1 176761936 176762081 -65902272 - AluJb SINE Alu -161 151 1 552 267 118 68 chr1 176762081 176762275 -65902078 - MLT1G1 LTR MaLR -411 184 1 23 68 0 0 chr1 176762997 176763041 -65901312 + AT_rich Low_complexity Low_complexity 1 44 0 1999 138 0 0 chr1 176763274 176763556 -65900797 - AluSx SINE Alu -10 302 21 260 356 168 28 chr1 176763678 176764243 -65900110 - L2 LINE L2 -339 2975 2332 21 0 0 0 chr1 176764910 176764931 -65899422 + AT_rich Low_complexity Low_complexity 1 21 0 994 144 0 0 chr1 176765315 176765454 -65898899 + AluSq/x SINE Alu 1 139 -173 27 49 0 0 chr1 176765471 176765512 -65898841 + AT_rich Low_complexity Low_complexity 1 41 0 688 292 48 36 chr1 176765649 176766114 -65898239 - LTR33 LTR ERVL 0 521 9 731 273 38 73 chr1 176766140 176766692 -65897661 + L1ME LINE L1 799 1494 -4767 1606 156 58 4 chr1 176766692 176766968 -65897385 - AluJo SINE Alu -21 291 1 731 273 38 73 chr1 176766968 176767158 -65897195 + L1ME LINE L1 1494 1689 -4572 226 204 0 37 chr1 176767360 176767414 -65896939 + L1MC4 LINE L1 6652 6703 -1339 * 232 218 23 81 chr1 176767372 176767459 -65896894 - L1MC3 LINE L1 -1139 6646 6565 416 208 10 0 chr1 176767466 176767567 -65896786 + (TA)n Simple_repeat Simple_repeat 1 102 0 418 191 0 11 chr1 176767571 176767660 -65896693 + L1MA9 LINE L1 6187 6274 -38 725 280 82 13 chr1 176767673 176768062 -65896291 + L1ME LINE L1 2313 2728 -3352 464 166 48 135 chr1 176768114 176768337 -65896016 + L1M4 LINE L1 4507 4748 -1398 2582 63 0 0 chr1 176768337 176768640 -65895713 + AluY SINE Alu 9 311 0 464 166 48 135 chr1 176768640 176768681 -65895672 + L1M4 LINE L1 4748 4742 -1404 2133 116 0 20 chr1 176768681 176768975 -65895378 + AluSx SINE Alu 3 290 -22 464 166 48 135 chr1 176768975 176769004 -65895349 + L1M4 LINE L1 4741 4771 -1375 428 236 80 75 chr1 176769061 176769260 -65895093 + L1ME3A LINE L1 5963 6162 -8 214 269 0 0 chr1 176769293 176769345 -65895008 + MIR SINE MIR 196 247 -15 220 217 0 0 chr1 176769355 176769401 -65894952 + CT-rich Low_complexity Low_complexity 4 49 0 258 345 9 0 chr1 176770508 176770624 -65893729 - L2 LINE L2 0 3313 3197 5482 163 12 37 chr1 176770825 176771211 -65893142 + L1P5 LINE L1 4125 4519 -1635 2196 138 3 0 chr1 176771211 176771522 -65892831 + AluSx SINE Alu 1 312 0 5482 163 12 37 chr1 176771522 176772841 -65891512 + L1P5 LINE L1 4519 5776 -378 309 26 0 0 chr1 176772841 176772879 -65891474 + (TG)n Simple_repeat Simple_repeat 1 38 0 228 224 0 0 chr1 176773459 176773508 -65890845 - L2 LINE L2 -8 3305 3257 217 318 23 70 chr1 176775413 176775542 -65888811 - L2 LINE L2 -1 3271 3149 187 300 210 13 chr1 176775685 176775918 -65888435 - L2 LINE L2 -422 2892 2614 857 346 40 16 chr1 176775927 176776378 -65887975 - L3 LINE CR1 -428 1149 688 190 317 156 45 chr1 176776448 176776672 -65887681 - L3 LINE CR1 -1041 536 288 * 2083 261 102 32 chr1 176776667 176776738 -65887615 + L2 LINE L2 2084 2149 -1164 2526 77 0 0 chr1 176776738 176777036 -65887317 - AluSc SINE Alu -11 298 1 2083 261 102 32 chr1 176777036 176778098 -65886255 + L2 LINE L2 2149 3307 -6 897 223 60 9 chr1 176778268 176778501 -65885852 - MIR SINE MIR 0 262 18 829 282 46 1 chr1 176779202 176779537 -65884816 + MLT1J1 LTR MaLR 68 446 0 589 274 101 9 chr1 176780296 176780515 -65883838 - MIR SINE MIR 0 262 24 274 295 171 9 chr1 176780710 176780815 -65883538 + MIR SINE MIR 23 144 -64 227 83 14 83 chr1 176782201 176782273 -65882080 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 533 226 6 17 chr1 176782280 176782461 -65881892 + CT-rich Low_complexity Low_complexity 2 180 0 1805 142 30 30 chr1 176782482 176782784 -65881569 - AluJo SINE Alu -10 302 1 598 275 62 54 chr1 176782823 176783081 -65881272 + MER112 DNA MER1_type 1 260 0 230 300 0 0 chr1 176783136 176783196 -65881157 + MIR3 SINE MIR 119 178 -30 683 282 78 29 chr1 176783953 176784198 -65880155 - MIR SINE MIR -5 257 1 393 293 74 26 chr1 176784590 176784819 -65879534 - MIR SINE MIR 0 262 23 577 279 80 18 chr1 176786214 176786440 -65877913 + MIR SINE MIR 12 251 -11 6680 68 13 15 chr1 176787087 176788719 -65875634 + L1PA10 LINE L1 4524 6159 -9 883 230 83 0 chr1 176788741 176788971 -65875382 - MIR SINE MIR -6 256 8 353 253 10 10 chr1 176791480 176791579 -65872774 + MIR SINE MIR 56 154 -108 560 68 0 0 chr1 176791597 176791670 -65872683 - AluY SINE Alu -13 299 227 929 96 8 8 chr1 176791670 176791795 -65872558 - AluY SINE Alu -148 163 39 281 296 10 10 chr1 176791795 176791893 -65872460 + MIR SINE MIR 153 250 -12 2304 84 3 7 chr1 176792297 176792596 -65871757 + AluSg1 SINE Alu 1 298 -11 202 269 30 0 chr1 176795427 176795494 -65868859 - L2 LINE L2 -36 3236 3168 206 118 0 0 chr1 176796535 176796569 -65867784 + (TAGA)n Simple_repeat Simple_repeat 2 35 0 184 309 60 12 chr1 176796963 176797047 -65867306 - MER5A DNA MER1_type -22 167 80 1589 164 26 51 chr1 176797650 176797798 -65866555 + AluJo SINE Alu 1 151 -161 2360 109 0 0 chr1 176797798 176798102 -65866251 + AluSq SINE Alu 1 304 -9 1589 164 26 51 chr1 176798102 176798265 -65866088 + AluJo SINE Alu 151 304 -8 415 239 172 43 chr1 176798465 176798674 -65865679 - MIR SINE MIR -1 261 26 2275 180 90 52 chr1 176800066 176800610 -65863743 + MLT1F1 LTR MaLR 1 565 -2 224 200 0 36 chr1 176801030 176801085 -65863268 - MIR SINE MIR -87 175 123 36 0 0 0 chr1 176802059 176802095 -65862258 + AT_rich Low_complexity Low_complexity 1 36 0 1893 135 3 44 chr1 176803735 176804032 -65860321 - AluSx SINE Alu -27 285 1 247 225 0 0 chr1 176804613 176804653 -65859700 + AluJb SINE Alu 1 40 -261 294 99 55 10 chr1 176804653 176804714 -65859639 - AluJ/FLAM SINE Alu -210 92 49 1336 176 19 35 chr1 176804755 176805016 -65859337 + AluJb SINE Alu 40 296 -16 4842 52 21 3 chr1 176805159 176806170 -65858183 + MER11A LTR ERVK 1 1265 -1 1634 161 9 50 chr1 176806170 176806492 -65857861 + AluJb SINE Alu 1 309 -3 2160 120 0 0 chr1 176806498 176806816 -65857537 + AluSx SINE Alu 1 318 0 27 29 0 0 chr1 176806836 176806870 -65857483 + AT_rich Low_complexity Low_complexity 1 34 0 290 279 17 91 chr1 176807015 176807366 -65856987 + L1MC4a LINE L1 3663 3987 -2159 644 308 56 64 chr1 176807366 176807759 -65856594 - LTR16C LTR ERVL -8 483 94 2243 136 0 0 chr1 176807926 176808234 -65856119 + AluSx SINE Alu 1 308 -4 473 290 113 61 chr1 176808234 176809157 -65855196 + L1MC4a LINE L1 4018 4988 -1158 363 276 94 25 chr1 176809221 176809609 -65854744 + L1MC4a LINE L1 5078 5487 -743 * 1661 223 105 4 chr1 176809608 176810065 -65854288 + L1MC4 LINE L1 7414 7916 -126 2428 147 5 20 chr1 176810092 176810494 -65853859 + MER61B LTR ERV1 1 396 -29 320 244 44 22 chr1 176810502 176810592 -65853761 + MER61B-int LTR ERV1 1 92 -5125 28942 99 68 50 chr1 176810869 176811076 -65853277 + MER61B-int LTR ERV1 364 566 -4651 2091 130 0 0 chr1 176811076 176811388 -65852965 - AluSx SINE Alu 0 312 1 28942 99 68 50 chr1 176811388 176815950 -65848403 + MER61B-int LTR ERV1 566 5217 0 2448 143 23 13 chr1 176815950 176816342 -65848011 + MER61B LTR ERV1 1 396 -29 557 230 14 0 chr1 176816362 176816510 -65847843 + L1MC4 LINE L1 7892 8041 -1 316 247 17 39 chr1 176816505 176816633 -65847720 + L1M2 LINE L1 5466 5589 -532 * 322 301 38 8 chr1 176816791 176816924 -65847429 + Charlie7 DNA MER1_type 2475 2611 -1 394 300 126 9 chr1 176816961 176817184 -65847169 + L1MC4a LINE L1 5681 5929 -241 1668 176 30 25 chr1 176817185 176817548 -65846805 - MLT1A1 LTR MaLR 0 365 1 978 170 26 127 chr1 176817567 176817796 -65846557 + MLT1C LTR MaLR 185 467 0 844 182 14 0 chr1 176818776 176818919 -65845434 - FRAM SINE Alu -35 141 1 482 189 78 59 chr1 176818929 176819082 -65845271 + MER57A LTR ERV1 248 403 0 2594 53 0 3 chr1 176819194 176819494 -65844859 - AluSc SINE Alu -10 299 1 204 364 31 0 chr1 176819857 176819986 -65844367 + (TCCA)n Simple_repeat Simple_repeat 4 136 0 21 0 0 0 chr1 176820415 176820436 -65843917 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 176821406 176821430 -65842923 + GC_rich Low_complexity Low_complexity 1 24 0 252 317 174 35 chr1 176822206 176822465 -65841888 - L2 LINE L2 -564 2750 2456 4882 119 72 3 chr1 176822780 176823563 -65840790 + Tigger3b DNA MER2_type 2 838 -393 2301 102 3 16 chr1 176823722 176824025 -65840328 + AluSq SINE Alu 1 299 -14 2015 162 0 0 chr1 176824101 176824410 -65839943 + AluSx SINE Alu 1 309 -3 565 269 80 5 chr1 176824411 176824612 -65839741 + MIR SINE MIR 47 262 0 552 267 118 68 chr1 176825963 176826370 -65837983 - MLT1G1 LTR MaLR 0 595 184 1805 140 0 45 chr1 176826370 176826510 -65837843 - AluJb SINE Alu -39 273 151 2610 62 0 0 chr1 176826510 176826814 -65837539 - AluY SINE Alu -7 304 1 1805 140 0 45 chr1 176826814 176826959 -65837394 - AluJb SINE Alu -161 151 1 552 267 118 68 chr1 176826959 176827153 -65837200 - MLT1G1 LTR MaLR -411 184 1 23 68 0 0 chr1 176827875 176827919 -65836434 + AT_rich Low_complexity Low_complexity 1 44 0 1999 138 0 0 chr1 176828152 176828434 -65835919 - AluSx SINE Alu -10 302 21 260 356 168 28 chr1 176828556 176829121 -65835232 - L2 LINE L2 -339 2975 2332 994 144 0 0 chr1 176830191 176830330 -65834023 + AluSq/x SINE Alu 1 139 -173 27 49 0 0 chr1 176830347 176830388 -65833965 + AT_rich Low_complexity Low_complexity 1 41 0 688 292 48 36 chr1 176830525 176830990 -65833363 - LTR33 LTR ERVL 0 521 9 731 273 38 73 chr1 176831016 176831568 -65832785 + L1ME LINE L1 799 1494 -4767 1606 156 58 4 chr1 176831568 176831844 -65832509 - AluJo SINE Alu -21 291 1 731 273 38 73 chr1 176831844 176832034 -65832319 + L1ME LINE L1 1494 1689 -4572 226 204 0 37 chr1 176832236 176832290 -65832063 + L1MC4 LINE L1 6652 6703 -1339 * 232 218 23 81 chr1 176832248 176832335 -65832018 - L1MC3 LINE L1 -1139 6646 6565 416 208 10 0 chr1 176832342 176832443 -65831910 + (TA)n Simple_repeat Simple_repeat 1 102 0 418 191 0 11 chr1 176832447 176832536 -65831817 + L1MA9 LINE L1 6187 6274 -38 725 280 82 13 chr1 176832549 176832938 -65831415 + L1ME LINE L1 2313 2728 -3352 464 166 48 135 chr1 176832990 176833213 -65831140 + L1M4 LINE L1 4507 4748 -1398 2582 63 0 0 chr1 176833213 176833516 -65830837 + AluY SINE Alu 9 311 0 464 166 48 135 chr1 176833516 176833557 -65830796 + L1M4 LINE L1 4748 4742 -1404 2133 116 0 20 chr1 176833557 176833851 -65830502 + AluSx SINE Alu 3 290 -22 464 166 48 135 chr1 176833851 176833880 -65830473 + L1M4 LINE L1 4741 4771 -1375 428 236 80 75 chr1 176833937 176834136 -65830217 + L1ME3A LINE L1 5963 6162 -8 214 269 0 0 chr1 176834169 176834221 -65830132 + MIR SINE MIR 196 247 -15 220 217 0 0 chr1 176834231 176834277 -65830076 + CT-rich Low_complexity Low_complexity 4 49 0 258 345 9 0 chr1 176835384 176835500 -65828853 - L2 LINE L2 0 3313 3197 5435 163 12 38 chr1 176835701 176836087 -65828266 + L1P5 LINE L1 4125 4519 -1635 2175 142 3 0 chr1 176836087 176836398 -65827955 + AluSx SINE Alu 1 312 0 5435 163 12 38 chr1 176836398 176837717 -65826636 + L1P5 LINE L1 4519 5776 -378 309 26 0 0 chr1 176837717 176837755 -65826598 + (TG)n Simple_repeat Simple_repeat 1 38 0 228 224 0 0 chr1 176838335 176838384 -65825969 - L2 LINE L2 -8 3305 3257 217 318 23 70 chr1 176840289 176840418 -65823935 - L2 LINE L2 -1 3271 3149 187 300 210 13 chr1 176840561 176840794 -65823559 - L2 LINE L2 -422 2892 2614 857 346 40 16 chr1 176840803 176841254 -65823099 - L3 LINE CR1 -428 1149 688 190 317 156 45 chr1 176841324 176841548 -65822805 - L3 LINE CR1 -1041 536 288 * 2083 261 102 32 chr1 176841543 176841614 -65822739 + L2 LINE L2 2084 2149 -1164 2526 77 0 0 chr1 176841614 176841912 -65822441 - AluSc SINE Alu -11 298 1 2083 261 102 32 chr1 176841912 176842974 -65821379 + L2 LINE L2 2149 3307 -6 897 223 60 9 chr1 176843144 176843377 -65820976 - MIR SINE MIR 0 262 18 829 282 46 1 chr1 176844078 176844413 -65819940 + MLT1J1 LTR MaLR 68 446 0 589 274 101 9 chr1 176845172 176845391 -65818962 - MIR SINE MIR 0 262 24 274 295 171 9 chr1 176845586 176845691 -65818662 + MIR SINE MIR 23 144 -64 216 182 0 0 chr1 176850634 176850678 -65813675 + CT-rich Low_complexity Low_complexity 4 47 0 2294 110 0 0 chr1 176850723 176851024 -65813329 + AluSq SINE Alu 1 301 -12 275 274 60 0 chr1 176851581 176851665 -65812688 - L2 LINE L2 -241 3031 2943 185 318 45 36 chr1 176852411 176852521 -65811832 + MIR3 SINE MIR 86 196 -12 1655 142 75 8 chr1 176852861 176853129 -65811224 - AluSx SINE Alu -26 286 1 625 217 57 0 chr1 176853597 176853754 -65810599 + MIR SINE MIR 15 180 -82 343 66 0 33 chr1 176854485 176854546 -65809807 + (CCCCCA)n Simple_repeat Simple_repeat 6 64 0 346 319 87 26 chr1 176854729 176854958 -65809395 - L2 LINE L2 -245 3068 2826 4727 257 221 8 chr1 176855006 176857250 -65807103 + L2 LINE L2 299 3030 -283 5293 179 15 25 chr1 176857250 176857323 -65807030 - L1MB3 LINE L1 -13 6170 6098 2190 198 17 2 chr1 176857323 176857732 -65806621 + MER47B DNA MER2_type 4 418 0 5293 179 15 25 chr1 176857732 176858035 -65806318 - L1MB3 LINE L1 -85 6098 5794 2298 101 3 7 chr1 176858035 176858342 -65806011 - AluSx SINE Alu -6 306 1 5293 179 15 25 chr1 176858342 176859896 -65804457 - L1MB3 LINE L1 -389 5794 4256 1982 127 3 3 chr1 176859929 176860237 -65804116 - AluSx SINE Alu 0 308 1 2611 50 0 0 chr1 176860473 176860770 -65803583 - AluY SINE Alu -14 297 1 811 212 14 108 chr1 176860783 176861020 -65803333 - L1MB3 LINE L1 -2757 3389 3208 2390 100 3 0 chr1 176861020 176861320 -65803033 - AluSx SINE Alu -11 301 1 811 212 14 108 chr1 176861320 176861507 -65802846 - L1MB3 LINE L1 -2938 3208 3005 273 295 76 9 chr1 176861507 176861612 -65802741 + L2 LINE L2 3202 3313 0 489 250 138 67 chr1 176861621 176862087 -65802266 + L2 LINE L2 2727 3215 -98 282 296 14 0 chr1 176862099 176862170 -65802183 + CT-rich Low_complexity Low_complexity 3 74 0 314 45 23 0 chr1 176862174 176862218 -65802135 + (TC)n Simple_repeat Simple_repeat 2 46 0 284 234 16 0 chr1 176862218 176862282 -65802071 + L2 LINE L2 3234 3298 -15 701 299 67 95 chr1 176862300 176863275 -65801078 - L2 LINE L2 -613 2701 1755 896 267 111 18 chr1 176863376 176863709 -65800644 + LTR16A LTR ERVL 9 372 -78 224 373 80 30 chr1 176863760 176864060 -65800293 + L3 LINE CR1 849 1163 -414 363 252 12 12 chr1 176864244 176864348 -65800005 - MIR SINE MIR -81 127 22 4121 105 40 11 chr1 176864374 176865001 -65799352 - Tigger4(Zombi) DNA MER2_type -1 2730 2086 1076 145 0 0 chr1 176864998 176865157 -65799196 - Tigger4(Zombi) DNA MER2_type -2571 160 2 * 1057 257 141 21 chr1 176865618 176866038 -65798315 + LTR38 LTR ERV1 87 556 0 282 282 0 0 chr1 176867287 176867358 -65796995 + C-rich Low_complexity Low_complexity 5 75 0 1344 78 34 6 chr1 176867482 176867661 -65796692 + AluSq SINE Alu 120 303 -10 967 302 31 32 chr1 176868603 176869104 -65795249 - MLT1K LTR MaLR -3 585 26 244 290 133 29 chr1 176869192 176869613 -65794740 - L1ME4a LINE L1 -146 5975 5511 306 255 43 11 chr1 176869993 176870087 -65794266 + L2 LINE L2 2255 2351 -963 228 263 53 0 chr1 176870104 176870161 -65794192 + L2 LINE L2 3213 3272 0 501 324 89 39 chr1 176870225 176870663 -65793690 + L2 LINE L2 2421 2880 -434 230 331 154 38 chr1 176870980 176871481 -65792872 - L2 LINE L2 -1229 2085 1527 491 260 83 11 chr1 176871777 176871958 -65792395 + MIR SINE MIR 31 224 -38 315 111 0 0 chr1 176872230 176872275 -65792078 - MADE1 DNA Mariner -2 78 34 2265 64 0 0 chr1 176872278 176872545 -65791808 + AluY SINE Alu 31 297 -14 656 296 149 20 chr1 176872555 176872951 -65791402 + L2 LINE L2 2833 3279 -34 2117 131 3 13 chr1 176872976 176873281 -65791072 - AluSx SINE Alu -10 302 1 5103 164 53 20 chr1 176873976 176874986 -65789367 + L1MA6 LINE L1 5255 6298 -2 33 0 0 0 chr1 176874994 176875027 -65789326 + AT_rich Low_complexity Low_complexity 1 33 0 240 35 0 0 chr1 176875027 176875056 -65789297 + (GA)n Simple_repeat Simple_repeat 2 30 0 265 314 46 62 chr1 176875095 176875289 -65789064 + MIR SINE MIR 23 213 -49 238 303 0 15 chr1 176875263 176875329 -65789024 - MIR SINE MIR -3 259 195 * 2669 217 95 27 chr1 176875356 176875548 -65788805 - L1ME3 LINE L1 -13 6149 5971 2272 124 65 11 chr1 176875548 176875904 -65788449 + THE1C LTR MaLR 1 375 0 10270 121 29 50 chr1 176875904 176877518 -65786835 + THE1C-int LTR MaLR 1 1580 0 1979 131 122 9 chr1 176877518 176877853 -65786500 + THE1C LTR MaLR 1 373 -2 2669 217 95 27 chr1 176877853 176878574 -65785779 - L1ME3 LINE L1 -190 5972 5177 1258 211 90 0 chr1 176878590 176878846 -65785507 - AluJo SINE Alu -33 279 1 611 235 168 39 chr1 176878849 176879478 -65784875 - L1ME3 LINE L1 -982 5164 4452 342 269 215 0 chr1 176879480 176879610 -65784743 - MIR SINE MIR -42 220 63 549 193 50 6 chr1 176879661 176879822 -65784531 + L1MA5 LINE L1 5166 5333 -813 28791 115 46 59 chr1 176879831 176886063 -65778290 + L1PA7 LINE L1 12 6150 -4 3860 133 22 9 chr1 176886055 176886684 -65777669 + L1MA5 LINE L1 5315 5951 -346 * 5149 52 41 8 chr1 176886690 176887326 -65777027 - SVA Other Other 0 1386 730 345 58 77 0 chr1 176887328 176887380 -65776973 + L1MA5 LINE L1 6071 6126 -174 6480 41 9 4 chr1 176887380 176888130 -65776223 + L1PA4 LINE L1 5382 6137 -18 5616 83 22 28 chr1 176888626 176889497 -65774856 - SVA Other Other -518 868 3 12973 177 34 12 chr1 176889497 176890926 -65773427 - L1PBa LINE L1 -1189 5673 4277 180 0 0 0 chr1 176890926 176890946 -65773407 + (TG)n Simple_repeat Simple_repeat 1 20 0 12973 177 34 12 chr1 176890946 176891834 -65772519 - L1PBa LINE L1 -2585 4277 3410 2026 124 3 7 chr1 176891834 176892149 -65772204 - AluSx SINE Alu 0 314 1 12973 177 34 12 chr1 176892149 176893616 -65770737 - L1PBa LINE L1 -3452 3410 1795 6342 35 1 51 chr1 176893616 176894399 -65769954 + L1PA5 LINE L1 5407 6150 -4 11738 105 39 15 chr1 176894590 176896358 -65767995 - L1PBa LINE L1 -5054 1809 1 884 266 72 29 chr1 176896409 176896850 -65767503 + LTR1B LTR ERV1 53 1216 -328 2564 263 59 10 chr1 176897417 176898197 -65766156 + L1ME3A LINE L1 5308 6125 -45 331 241 111 0 chr1 176898729 176898837 -65765516 - MIR SINE MIR -62 200 81 306 303 131 34 chr1 176899428 176899603 -65764750 + MIR SINE MIR 32 223 -39 441 263 18 53 chr1 176900011 176900155 -65764198 + MIR SINE MIR 82 221 -41 1923 132 29 4 chr1 176900155 176900435 -65763918 + AluSx SINE Alu 22 308 -4 441 263 18 53 chr1 176900435 176900461 -65763892 + MIR SINE MIR 221 246 -16 1094 259 76 51 chr1 176900476 176900908 -65763445 + LTR16A1 LTR ERVL 15 457 0 366 318 47 0 chr1 176900919 176901067 -65763286 + HERV16 LTR ERVL 40 194 -4802 2236 323 73 21 chr1 176901204 176903128 -65761225 + HERV16 LTR ERVL 397 2486 -2510 301 228 9 97 chr1 176904538 176904652 -65759701 + MLT1H LTR MaLR 434 537 -12 2412 95 0 0 chr1 176905076 176905381 -65758972 + AluSq SINE Alu 1 305 -8 789 186 23 0 chr1 176905556 176905685 -65758668 + AluJb SINE Alu 2 133 -179 348 316 32 11 chr1 176906499 176906686 -65757667 + L1ME4a LINE L1 5693 5883 -238 645 250 52 1 chr1 176907039 176907245 -65757108 + MER8 DNA MER2_type 2 239 0 361 246 18 9 chr1 176907245 176907359 -65756994 - HAL1 LINE L1 -1360 1147 1033 443 298 82 67 chr1 176907402 176907717 -65756636 + MLT1I LTR MaLR 71 390 -19 766 281 146 88 chr1 176907739 176908317 -65756036 - HAL1 LINE L1 -1467 1040 388 2072 121 0 4 chr1 176908317 176908598 -65755755 - AluSg SINE Alu -30 280 1 766 281 146 88 chr1 176908598 176908939 -65755414 - HAL1 LINE L1 -2119 388 68 293 283 40 0 chr1 176909666 176909765 -65754588 + L1ME LINE L1 5636 5738 -383 5183 234 76 21 chr1 176909826 176911278 -65753075 - L2 LINE L2 -1764 1550 19 522 207 100 29 chr1 176911376 176911516 -65752837 - MIR SINE MIR -60 202 53 189 0 0 0 chr1 176911708 176911729 -65752624 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 286 255 71 50 chr1 176914403 176914544 -65749809 + MER103 DNA DNA 2 145 -21 248 229 118 1 chr1 176914558 176914636 -65749717 - MIR3 SINE MIR -20 188 99 980 158 13 0 chr1 176914646 176914804 -65749549 + AluSg/x SINE Alu 145 304 -6 897 270 143 16 chr1 176916491 176917034 -65747319 - L2 LINE L2 0 3313 2684 183 331 124 41 chr1 176917072 176917217 -65747136 + MIR3 SINE MIR 1 157 -51 15707 116 15 3 chr1 176918147 176921293 -65743060 - L1PA8 LINE L1 -3 6484 3381 2471 92 0 3 chr1 176921317 176921645 -65742708 - L1PA7 LINE L1 -20 6134 5808 * 10444 159 45 38 chr1 176921631 176922458 -65741895 - L1PA8 LINE L1 -3054 3407 2588 1672 59 0 5 chr1 176922458 176922661 -65741692 - L1PA4 LINE L1 -3 6152 5951 10444 159 45 38 chr1 176922661 176925072 -65739281 - L1PA8 LINE L1 -3873 2588 68 2043 141 20 3 chr1 176925072 176925378 -65738975 - AluSq SINE Alu -2 311 1 10444 159 45 38 chr1 176925378 176925435 -65738918 - L1PA8 LINE L1 -6393 68 13 1139 266 71 25 chr1 176925789 176926154 -65738199 - L1MCb LINE L1 -5663 382 1 196 286 0 0 chr1 176926205 176926247 -65738106 + L2 LINE L2 3220 3261 -11 2061 133 7 0 chr1 176926486 176926788 -65737565 - AluSq SINE Alu -8 305 2 461 293 66 12 chr1 176926975 176927188 -65737165 - MIR SINE MIR -36 226 3 2156 146 0 0 chr1 176927423 176927731 -65736622 + AluSx SINE Alu 1 308 -4 299 302 78 39 chr1 176928468 176928647 -65735706 + MIR SINE MIR 76 261 -1 2144 64 50 3 chr1 176929731 176930014 -65734339 + AluY SINE Alu 1 296 -15 772 296 149 18 chr1 176930024 176930419 -65733934 + L2 LINE L2 2833 3279 -34 2133 128 3 13 chr1 176930444 176930749 -65733604 - AluSx SINE Alu -10 302 1 5194 162 53 20 chr1 176931444 176932454 -65731899 + L1MA6 LINE L1 5255 6298 -2 31 0 0 0 chr1 176932462 176932493 -65731860 + AT_rich Low_complexity Low_complexity 1 31 0 258 32 0 0 chr1 176932493 176932524 -65731829 + (GA)n Simple_repeat Simple_repeat 2 32 0 265 314 46 62 chr1 176932563 176932757 -65731596 + MIR SINE MIR 23 213 -49 238 303 0 15 chr1 176932731 176932797 -65731556 - MIR SINE MIR -3 259 195 * 2669 217 95 27 chr1 176932824 176933016 -65731337 - L1ME3 LINE L1 -13 6149 5971 2272 124 65 11 chr1 176933016 176933372 -65730981 + THE1C LTR MaLR 1 375 0 10252 121 29 50 chr1 176933372 176934986 -65729367 + THE1C-int LTR MaLR 1 1580 0 1979 131 122 9 chr1 176934986 176935321 -65729032 + THE1C LTR MaLR 1 373 -2 2669 217 95 27 chr1 176935321 176936042 -65728311 - L1ME3 LINE L1 -190 5972 5177 1234 208 94 0 chr1 176936058 176936313 -65728040 - AluJo SINE Alu -33 279 1 1144 255 156 22 chr1 176936316 176936943 -65727410 - L1ME3 LINE L1 -982 5164 4454 249 290 234 8 chr1 176936944 176937068 -65727285 - MIR SINE MIR -38 224 73 339 183 14 0 chr1 176937129 176937200 -65727153 + L1MB3 LINE L1 5166 5237 -909 983 240 91 34 chr1 176937336 176937478 -65726875 + L1MC4a LINE L1 5804 5936 -1872 2816 6 0 13 chr1 176937478 176937793 -65726560 + AluYa5 SINE Alu 1 311 0 983 240 91 34 chr1 176937793 176937943 -65726410 + L1MC4a LINE L1 5936 6076 -1732 204 67 0 0 chr1 176937943 176937973 -65726380 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 983 240 91 34 chr1 176937973 176938096 -65726257 + L1MC4a LINE L1 6076 6244 -1564 662 159 84 0 chr1 176938097 176938204 -65726149 - MER7A DNA MER2_type 0 336 221 623 226 0 0 chr1 176938206 176938321 -65726032 - MER7A DNA MER2_type -233 113 1 4700 213 112 29 chr1 176938325 176939731 -65724622 + L1MC4 LINE L1 6271 7792 -250 2409 139 26 11 chr1 176939739 176940119 -65724234 + MLT1B LTR MaLR 5 390 0 2134 145 53 11 chr1 176940119 176940499 -65723854 + L1MB3 LINE L1 5787 6182 -1 1000 193 57 37 chr1 176940517 176940761 -65723592 + MLT1C LTR MaLR 173 421 -46 313 297 77 0 chr1 176941226 176941317 -65723036 - L2 LINE L2 0 3313 3216 1304 306 49 16 chr1 176941317 176941713 -65722640 + LTR16B LTR ERVL 1 415 -49 2464 162 65 2 chr1 176941713 176942114 -65722239 - MSTB LTR MaLR 0 426 1 1304 306 49 16 chr1 176942114 176942164 -65722189 + LTR16B LTR ERVL 415 462 -2 868 180 26 110 chr1 176942196 176942405 -65721948 + MIR SINE MIR 13 195 -67 5851 132 21 13 chr1 176942405 176944101 -65720252 + L1PA16 LINE L1 4456 6164 -2 868 180 26 110 chr1 176944101 176944163 -65720190 + MIR SINE MIR 195 261 -1 191 390 31 6 chr1 176944389 176944548 -65719805 - L2 LINE L2 -298 2974 2812 26 64 0 0 chr1 176945301 176945348 -65719005 + AT_rich Low_complexity Low_complexity 1 47 0 2603 176 21 0 chr1 176945757 176946178 -65718175 - MSTB1 LTR MaLR -2 430 1 6029 253 63 40 chr1 176946624 176947821 -65716532 + L1MEc LINE L1 35 1203 -5193 261 0 0 0 chr1 176947821 176947850 -65716503 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 6029 253 63 40 chr1 176947850 176948100 -65716253 + L1MEc LINE L1 1203 1446 -4950 2366 86 0 3 chr1 176948100 176948401 -65715952 + AluY SINE Alu 1 300 -11 6029 253 63 40 chr1 176948401 176949301 -65715052 + L1MEc LINE L1 1446 2438 -3958 4007 221 54 10 chr1 176949350 176950347 -65714006 + L1PB1 LINE L1 6 1046 -5817 15497 193 15 8 chr1 176950350 176955893 -65708460 + L1PB1 LINE L1 1093 6866 -1 3909 111 37 61 chr1 176955960 176956669 -65707684 - L1PA13 LINE L1 -6 6157 5466 842 19 0 38 chr1 176957154 176957260 -65707093 + SVA Other Other 1285 1386 0 3842 133 23 8 chr1 176957266 176957884 -65706469 - L1MA5A LINE L1 -346 5951 5325 17900 97 19 15 chr1 176957887 176961189 -65703164 - L1PA7 LINE L1 -4 6465 3147 6146 132 7 1 chr1 176961198 176962101 -65702252 - L1PA7 LINE L1 -5546 915 8 2203 107 0 7 chr1 176962127 176962426 -65701927 - AluY SINE Alu -14 297 1 194 281 49 49 chr1 176962583 176962669 -65701684 + MER5B DNA MER1_type 93 189 0 1534 173 42 7 chr1 176964127 176964410 -65699943 + L1MA9 LINE L1 6020 6312 0 198 282 0 42 chr1 176964822 176964893 -65699460 + L2 LINE L2 2466 2533 -781 220 346 125 10 chr1 176964907 176965011 -65699342 - L2 LINE L2 -36 3236 3121 306 333 105 38 chr1 176965133 176965400 -65698953 + L2 LINE L2 2555 2839 -475 309 285 121 100 chr1 176965456 176965786 -65698567 + L2 LINE L2 2933 3269 -3 205 256 67 22 chr1 176966062 176966152 -65698201 + MIR SINE MIR 48 141 -121 2567 112 31 8 chr1 176966184 176966540 -65697813 - THE1B LTR MaLR 0 364 1 1443 245 68 16 chr1 176966540 176966965 -65697388 + MLT1C LTR MaLR 21 467 0 972 317 96 25 chr1 176968130 176968691 -65695662 - L2 LINE L2 -640 2674 2074 263 136 153 51 chr1 176968691 176968750 -65695603 + Charlie8 DNA MER1_type 2341 2405 -12 369 261 48 127 chr1 176968750 176969018 -65695335 + MIR SINE MIR 16 262 0 619 298 6 11 chr1 176970080 176970258 -65694095 - MER5B DNA MER1_type 0 178 2 2288 236 61 4 chr1 176970677 176971186 -65693167 + MER74A LTR ERVL 1 538 -20 2098 139 161 13 chr1 176971518 176971891 -65692462 - MSTA LTR MaLR 0 428 1 369 273 45 39 chr1 176972501 176972655 -65691698 + MIR SINE MIR 108 262 0 438 249 26 191 chr1 176973046 176973423 -65690930 + L2 LINE L2 2958 3272 0 3514 216 59 23 chr1 176974928 176975907 -65688446 + L1ME1 LINE L1 5164 6162 -4 1136 235 107 80 chr1 176976191 176976715 -65687638 + MER34 LTR ERV1 1 538 -4 377 113 16 0 chr1 176977474 176977536 -65686817 + MLT1K LTR MaLR 509 571 -17 285 299 157 23 chr1 176977594 176977746 -65686607 - MIR SINE MIR -16 246 55 1936 149 3 13 chr1 176977746 176978047 -65686306 + AluJb SINE Alu 1 298 -14 285 299 157 23 chr1 176978047 176978111 -65686242 - MIR SINE MIR -207 55 1 575 287 123 40 chr1 176978488 176978788 -65685565 + MER102b DNA MER1_type 1 325 -16 429 374 17 17 chr1 176979521 176979695 -65684658 + MIR SINE MIR 13 186 -76 570 242 95 20 chr1 176979698 176979950 -65684403 - LTR37B LTR ERV1 0 468 198 344 297 9 0 chr1 176979991 176980102 -65684251 - LTR37B LTR ERV1 -351 117 6 1543 146 38 17 chr1 176980230 176980527 -65683826 - MER61B LTR ERV1 -28 396 3 198 0 0 0 chr1 176980527 176980549 -65683804 + (TGG)n Simple_repeat Simple_repeat 1 22 0 627 140 0 53 chr1 176980570 176980684 -65683669 - AluJb SINE Alu -25 287 180 226 343 14 0 chr1 176980714 176980787 -65683566 + MIR SINE MIR 189 262 0 1547 236 28 84 chr1 176982146 176982184 -65682169 - MER34 LTR ERV1 0 542 503 3790 98 54 39 chr1 176982184 176982774 -65681579 - MER4A LTR ERV1 -1 599 1 1547 236 28 84 chr1 176982774 176983308 -65681045 - MER34 LTR ERV1 -39 503 2 715 344 34 12 chr1 176983310 176983633 -65680720 - L3 LINE CR1 -406 1171 842 406 312 184 37 chr1 176983722 176984129 -65680224 - L2 LINE L2 -899 2415 1949 288 221 130 13 chr1 176984182 176984259 -65680094 - L2 LINE L2 -4 3309 3224 288 340 39 0 chr1 176984352 176984455 -65679898 - L3 LINE CR1 -1036 541 435 1674 191 52 33 chr1 176984455 176985010 -65679343 + MLT2A2 LTR ERVL 1 554 0 333 293 12 0 chr1 176985171 176985253 -65679100 - L2 LINE L2 -15 3257 3175 338 270 118 46 chr1 176985270 176985422 -65678931 + MIR SINE MIR 7 169 -93 388 132 100 61 chr1 176985423 176985554 -65678799 - LTR37A LTR ERV1 0 457 308 222 37 0 0 chr1 176985588 176985615 -65678738 + (TA)n Simple_repeat Simple_repeat 2 28 0 1139 335 121 22 chr1 176985883 176986784 -65677569 - L2 LINE L2 -353 2961 1922 700 242 55 35 chr1 176986784 176987040 -65677313 - MIR SINE MIR 0 262 2 1139 335 121 22 chr1 176987040 176987277 -65677076 - L2 LINE L2 -1392 1922 1710 24 0 0 0 chr1 176987319 176987343 -65677010 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr1 176987384 176987408 -65676945 + AT_rich Low_complexity Low_complexity 1 24 0 1173 115 0 6 chr1 176987936 176988110 -65676243 + AluY SINE Alu 128 300 -11 543 70 0 0 chr1 176988111 176988182 -65676171 - Alu SINE Alu -237 74 4 3369 179 83 10 chr1 176988477 176989297 -65675056 + Charlie5 DNA MER1_type 1620 2499 -113 4109 173 32 17 chr1 176989683 176990587 -65673766 + L1MA7 LINE L1 4123 5040 -1106 1370 173 13 0 chr1 176990587 176990813 -65673540 - MER46A DNA MER2_type 0 236 8 2214 101 3 3 chr1 176990815 176991111 -65673242 - AluSc SINE Alu -13 296 1 5182 152 40 24 chr1 176991126 176992363 -65671990 + L1MA7 LINE L1 5039 6291 0 345 351 35 23 chr1 176992538 176992709 -65671644 + MIR3 SINE MIR 36 208 0 2100 117 21 0 chr1 176993394 176993684 -65670669 + AluSg SINE Alu 1 296 -14 902 305 82 78 chr1 176994012 176994151 -65670202 - L1MEc LINE L1 -4748 1648 1511 1788 179 13 0 chr1 176994151 176994459 -65669894 - AluJb SINE Alu 0 312 1 902 305 82 78 chr1 176994459 176995937 -65668416 - L1MEc LINE L1 -4885 1511 25 186 43 0 0 chr1 176996209 176996232 -65668121 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5762 124 30 32 chr1 176996356 176997574 -65666779 - L1PB1 LINE L1 0 6151 4942 28 0 0 0 chr1 176997574 176997602 -65666751 + AT_rich Low_complexity Low_complexity 1 28 0 4939 64 39 8 chr1 176997673 176998310 -65666043 - SVA Other Other 0 1386 730 1178 75 38 113 chr1 176998312 176998362 -65665991 + L1MA5A LINE L1 6073 6125 -172 6295 40 8 0 chr1 176998362 176999127 -65665226 + L1PA4 LINE L1 5382 6152 -3 1178 75 38 113 chr1 176999127 176999315 -65665038 + L1MA5A LINE L1 6125 6293 -4 299 289 58 29 chr1 176999531 176999635 -65664718 + L2 LINE L2 3160 3266 -6 202 193 18 35 chr1 177002474 177002531 -65661822 + A-rich Low_complexity Low_complexity 3 58 0 386 285 64 9 chr1 177002770 177003034 -65661319 + L1MEd LINE L1 1054 1373 -4862 2156 135 41 11 chr1 177003330 177003694 -65660659 - THE1C LTR MaLR 0 375 1 9572 130 13 68 chr1 177003698 177005364 -65658989 - THE1C-int LTR MaLR -6 1574 1 2453 117 19 3 chr1 177005364 177005733 -65658620 - THE1C LTR MaLR 0 375 1 347 307 80 13 chr1 177005747 177005972 -65658381 + L1ME LINE L1 5473 5712 -409 13553 167 17 7 chr1 177006057 177009200 -65655153 - L1PA13 LINE L1 -19 6144 2988 2537 75 0 0 chr1 177009200 177009506 -65654847 + AluY SINE Alu 1 306 -5 13553 167 17 7 chr1 177009506 177009716 -65654637 - L1PA13 LINE L1 -3175 2988 2782 3083 175 19 7 chr1 177009716 177010304 -65654049 + L1PA13 LINE L1 2185 2779 -3367 416 300 82 22 chr1 177010588 177010944 -65653409 + HsTC2 DNA Tc2 482 918 -980 230 328 119 17 chr1 177011225 177011402 -65652951 + HAL1b LINE L1 398 592 -756 1845 123 32 7 chr1 177011586 177011870 -65652483 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr1 177012511 177012539 -65651814 + AT_rich Low_complexity Low_complexity 1 28 0 309 318 166 38 chr1 177012613 177013060 -65651293 + L1MEd LINE L1 2283 2786 -3343 3218 184 56 35 chr1 177013067 177013834 -65650519 + L1MB7 LINE L1 5394 6176 -8 21 71 0 0 chr1 177013933 177013975 -65650378 + AT_rich Low_complexity Low_complexity 1 42 0 1457 194 78 70 chr1 177014741 177014908 -65649445 - Charlie1b DNA MER1_type -2241 520 356 2416 66 0 0 chr1 177014908 177015211 -65649142 + AluY SINE Alu 1 303 -8 1457 194 78 70 chr1 177015211 177015559 -65648794 - Charlie1b DNA MER1_type -2405 356 1 976 109 58 46 chr1 177015657 177015831 -65648522 - L1PA15 LINE L1 -1 6164 5989 556 114 0 0 chr1 177015834 177015913 -65648440 + L1PA15 LINE L1 5822 5900 -265 198 71 0 0 chr1 177016129 177016157 -65648196 + (T)n Simple_repeat Simple_repeat 1 28 0 746 283 21 0 chr1 177017342 177017533 -65646820 - MIR SINE MIR -65 197 3 430 344 189 26 chr1 177017872 177018375 -65645978 - L3 LINE CR1 -744 833 249 4238 207 75 70 chr1 177018717 177020212 -65644141 - HAL1 LINE L1 -35 2472 971 325 149 83 24 chr1 177020234 177020402 -65643951 + (TA)n Simple_repeat Simple_repeat 2 179 0 226 177 18 26 chr1 177020415 177020528 -65643825 + (TA)n Simple_repeat Simple_repeat 1 112 0 1163 278 185 32 chr1 177020542 177021365 -65642988 - HAL1 LINE L1 -1557 950 2 221 348 96 9 chr1 177021531 177021646 -65642707 + L2 LINE L2 3140 3264 -8 377 302 111 23 chr1 177023392 177023564 -65640789 + MIR SINE MIR 60 246 -16 212 328 56 50 chr1 177023834 177024032 -65640321 + MIR SINE MIR 8 206 -56 1298 150 5 24 chr1 177024038 177024245 -65640108 + AluJb SINE Alu 86 288 -24 258 300 29 50 chr1 177024405 177024545 -65639808 + L3 LINE CR1 735 871 -706 512 284 117 38 chr1 177024630 177024869 -65639484 + L3 LINE CR1 1029 1286 -291 833 240 62 5 chr1 177025035 177025227 -65639126 + MER63A DNA MER1_type 1 203 -7 183 351 91 0 chr1 177025235 177025312 -65639041 - L2 LINE L2 -49 3223 3140 1922 235 62 73 chr1 177025766 177026480 -65637873 - MER72 LTR ERV1 -16 706 1 256 285 123 15 chr1 177026674 177026804 -65637549 - MER5A DNA MER1_type -34 155 12 573 261 119 31 chr1 177026811 177027071 -65637282 - L2 LINE L2 -36 3277 2995 613 273 198 31 chr1 177027147 177027755 -65636598 - L2 LINE L2 -955 2359 1636 1773 187 0 3 chr1 177027755 177028054 -65636299 + AluJb SINE Alu 1 298 -14 613 273 198 31 chr1 177028054 177028090 -65636263 - L2 LINE L2 -1678 1636 1607 18407 101 9 1 chr1 177028552 177031821 -65632532 - L1PA7 LINE L1 -13 6456 3147 6538 110 7 1 chr1 177031830 177032733 -65631620 - L1PA7 LINE L1 -5546 915 8 2245 110 0 0 chr1 177032759 177033059 -65631294 - AluY SINE Alu -11 300 1 194 281 49 49 chr1 177033216 177033302 -65631051 + MER5B DNA MER1_type 93 189 0 1534 173 42 7 chr1 177034761 177035044 -65629309 + L1MA9 LINE L1 6020 6312 0 198 282 0 42 chr1 177035456 177035527 -65628826 + L2 LINE L2 2466 2533 -781 220 346 125 10 chr1 177035541 177035645 -65628708 - L2 LINE L2 -36 3236 3121 306 333 105 38 chr1 177035767 177036034 -65628319 + L2 LINE L2 2555 2839 -475 309 285 121 100 chr1 177036090 177036420 -65627933 + L2 LINE L2 2933 3269 -3 205 256 67 22 chr1 177036696 177036786 -65627567 + MIR SINE MIR 48 141 -121 2567 112 31 8 chr1 177036818 177037174 -65627179 - THE1B LTR MaLR 0 364 1 1443 245 68 16 chr1 177037174 177037599 -65626754 + MLT1C LTR MaLR 21 467 0 990 319 94 25 chr1 177038767 177039329 -65625024 - L2 LINE L2 -640 2674 2074 263 136 153 51 chr1 177039329 177039388 -65624965 + Charlie8 DNA MER1_type 2341 2405 -12 363 260 48 130 chr1 177039388 177039657 -65624696 + MIR SINE MIR 16 262 0 633 302 0 11 chr1 177040719 177040898 -65623455 - MER5B DNA MER1_type 0 178 2 2288 236 61 4 chr1 177041317 177041826 -65622527 + MER74A LTR ERVL 1 538 -20 2137 139 158 13 chr1 177042158 177042532 -65621821 - MSTA LTR MaLR 0 428 1 369 273 45 39 chr1 177043142 177043296 -65621057 + MIR SINE MIR 108 262 0 438 249 26 191 chr1 177043687 177044064 -65620289 + L2 LINE L2 2958 3272 0 3613 214 58 23 chr1 177045569 177046549 -65617804 + L1ME1 LINE L1 5164 6162 -4 1136 235 107 80 chr1 177046833 177047357 -65616996 + MER34 LTR ERV1 1 538 -4 384 113 16 0 chr1 177048112 177048174 -65616179 + MLT1K LTR MaLR 509 571 -17 252 304 157 23 chr1 177048232 177048384 -65615969 - MIR SINE MIR -16 246 55 1951 149 3 13 chr1 177048384 177048685 -65615668 + AluJb SINE Alu 1 298 -14 252 304 157 23 chr1 177048685 177048749 -65615604 - MIR SINE MIR -207 55 1 586 283 123 40 chr1 177049126 177049426 -65614927 + MER102b DNA MER1_type 1 325 -16 419 374 17 17 chr1 177050159 177050333 -65614020 + MIR SINE MIR 13 186 -76 616 238 95 20 chr1 177050336 177050588 -65613765 - LTR37B LTR ERV1 0 468 198 360 298 9 0 chr1 177050629 177050743 -65613610 - LTR37B LTR ERV1 -351 117 3 1556 146 38 17 chr1 177050868 177051165 -65613188 - MER61B LTR ERV1 -28 396 3 198 0 0 0 chr1 177051165 177051187 -65613166 + (TGG)n Simple_repeat Simple_repeat 1 22 0 679 140 0 53 chr1 177051208 177051322 -65613031 - AluJb SINE Alu -25 287 180 217 343 14 0 chr1 177051352 177051425 -65612928 + MIR SINE MIR 189 262 0 1584 236 28 84 chr1 177052784 177052822 -65611531 - MER34 LTR ERV1 0 542 503 4080 98 54 39 chr1 177052822 177053412 -65610941 - MER4A LTR ERV1 -1 599 1 1584 236 28 84 chr1 177053412 177053946 -65610407 - MER34 LTR ERV1 -39 503 2 698 344 34 12 chr1 177053948 177054271 -65610082 - L3 LINE CR1 -406 1171 842 401 295 192 44 chr1 177054360 177054767 -65609586 - L2 LINE L2 -899 2415 1949 284 221 130 13 chr1 177054820 177054897 -65609456 - L2 LINE L2 -4 3309 3224 274 340 39 0 chr1 177054990 177055093 -65609260 - L3 LINE CR1 -1036 541 435 1716 240 61 63 chr1 177055093 177055648 -65608705 + MLT2B3 LTR ERVL 1 554 0 333 293 12 0 chr1 177055809 177055891 -65608462 - L2 LINE L2 -15 3257 3175 320 270 118 46 chr1 177055908 177056060 -65608293 + MIR SINE MIR 7 169 -93 393 132 167 62 chr1 177056061 177056205 -65608148 - LTR37A LTR ERV1 0 426 268 222 37 0 0 chr1 177056226 177056253 -65608100 + (TA)n Simple_repeat Simple_repeat 1 27 0 1067 326 112 38 chr1 177056521 177057422 -65606931 - L2 LINE L2 -353 2961 1939 800 242 55 35 chr1 177057422 177057678 -65606675 - MIR SINE MIR 0 262 2 1067 326 112 38 chr1 177057678 177058035 -65606318 - L2 LINE L2 -1375 1939 1610 1561 213 27 15 chr1 177059163 177059501 -65604852 - L1ME LINE L1 -361 5805 5464 396 0 0 0 chr1 177059502 177059546 -65604807 + (CA)n Simple_repeat Simple_repeat 2 45 0 6827 68 17 3 chr1 177059546 177060905 -65603448 - L1PA7 LINE L1 -20 6134 4761 * 12566 161 18 114 chr1 177060904 177064088 -65600265 - L1P LINE L1 -3260 2886 7 588 115 94 0 chr1 177064092 177064188 -65600165 - AluSg/x SINE Alu -19 293 189 899 243 47 4 chr1 177064189 177064465 -65599888 - L1M4 LINE L1 -2708 3438 3151 7703 47 5 0 chr1 177064467 177065430 -65598923 - L1PA4 LINE L1 0 6155 5191 14478 27 2 0 chr1 177065431 177067109 -65597244 + L1PA4 LINE L1 3516 5197 -949 * 26149 103 18 13 chr1 177067106 177070924 -65593429 - L1P LINE L1 -2300 3846 11 1920 227 46 65 chr1 177070931 177071542 -65592811 - L1M4 LINE L1 -2977 3169 2575 1592 169 47 11 chr1 177071542 177071821 -65592532 - AluSx SINE Alu -23 289 1 1920 227 46 65 chr1 177071821 177072010 -65592343 - L1M4 LINE L1 -3571 2575 2384 341 138 0 0 chr1 177072009 177072067 -65592286 - L1P LINE L1 -783 5378 5321 * 2638 99 6 3 chr1 177072067 177072419 -65591934 - L1PB1 LINE L1 -8 6143 5791 231 218 0 0 chr1 177072457 177072512 -65591841 + (TA)n Simple_repeat Simple_repeat 1 55 0 758 115 57 8 chr1 177072523 177072645 -65591708 - L1PB1 LINE L1 -361 5790 5663 * 2027 118 16 22 chr1 177072639 177072954 -65591399 - L1PBa LINE L1 -5917 946 634 1250 153 0 0 chr1 177072954 177073150 -65591203 - L1PBa LINE L1 -6663 200 5 3825 165 29 3 chr1 177073157 177073885 -65590468 - L1P LINE L1 -812 5334 4588 4722 98 14 56 chr1 177073926 177074654 -65589699 + L1PA13 LINE L1 5461 6157 -6 13433 175 21 5 chr1 177074721 177080264 -65584089 - L1PB1 LINE L1 -1 6866 1093 3637 223 54 10 chr1 177080267 177081264 -65583089 - L1PB1 LINE L1 -5817 1046 6 5149 253 63 40 chr1 177081313 177082213 -65582140 - L1MEc LINE L1 -3958 2438 1561 2363 86 0 3 chr1 177082213 177082514 -65581839 - AluY SINE Alu -11 300 1 5149 253 63 40 chr1 177082514 177082764 -65581589 - L1MEc LINE L1 -4835 1561 1318 261 0 0 0 chr1 177082764 177082793 -65581560 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 5149 253 63 40 chr1 177082793 177083990 -65580363 - L1MEc LINE L1 -5078 1318 35 2411 176 21 0 chr1 177084436 177084857 -65579496 + MSTB1 LTR MaLR 1 430 -2 26 64 0 0 chr1 177085266 177085313 -65579040 + AT_rich Low_complexity Low_complexity 1 47 0 198 390 31 6 chr1 177086066 177086225 -65578128 + L2 LINE L2 2812 2974 -298 885 180 26 110 chr1 177086451 177086513 -65577840 - MIR SINE MIR -1 261 195 5405 132 25 13 chr1 177086513 177088209 -65576144 - L1PA16 LINE L1 -2 6164 4456 885 180 26 110 chr1 177088209 177088418 -65575935 - MIR SINE MIR -67 195 13 1162 311 49 16 chr1 177088450 177088500 -65575853 - LTR16B LTR ERVL -2 462 415 2281 162 65 2 chr1 177088500 177088901 -65575452 + MSTB LTR MaLR 1 426 0 1162 311 49 16 chr1 177088901 177089297 -65575056 - LTR16B LTR ERVL -49 415 1 318 297 77 0 chr1 177089297 177089388 -65574965 + L2 LINE L2 3216 3313 0 900 193 57 37 chr1 177089853 177090097 -65574256 - MLT1C LTR MaLR -46 421 173 1943 145 53 11 chr1 177090115 177090495 -65573858 - L1MB3 LINE L1 -1 6182 5787 2221 139 26 11 chr1 177090495 177090875 -65573478 - MLT1B LTR MaLR 0 390 5 5043 203 63 130 chr1 177090880 177092293 -65572060 - L1MC4a LINE L1 -107 7701 6194 574 226 0 0 chr1 177092293 177092408 -65571945 + MER7A DNA MER2_type 1 113 -233 611 159 84 0 chr1 177092410 177092517 -65571836 + MER7A DNA MER2_type 222 337 0 5043 203 63 130 chr1 177092517 177092641 -65571712 - L1MC4a LINE L1 -1615 6193 6062 204 67 0 0 chr1 177092641 177092671 -65571682 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 5043 203 63 130 chr1 177092671 177092826 -65571527 - L1MC4a LINE L1 -1746 6062 5898 2871 0 0 3 chr1 177092826 177093138 -65571215 - AluYa5 SINE Alu 0 311 1 5043 203 63 130 chr1 177093138 177093884 -65570469 - L1MC4a LINE L1 -1910 5898 5218 443 285 118 27 chr1 177093956 177094177 -65570176 + L3 LINE CR1 1143 1383 -194 226 322 59 34 chr1 177094574 177094692 -65569661 - L2 LINE L2 0 3313 3193 * 250 316 94 8 chr1 177094689 177094806 -65569547 - L3 LINE CR1 -1021 556 430 222 286 0 0 chr1 177095271 177095327 -65569026 - L3 LINE CR1 -13 1564 1509 381 338 142 52 chr1 177095384 177095807 -65568546 + L2 LINE L2 2807 3267 -5 597 231 23 0 chr1 177097392 177097522 -65566831 + MER3 DNA MER1_type 1 133 -76 874 128 0 0 chr1 177097814 177097947 -65566406 - L1PB4 LINE L1 -1 6155 6023 23856 138 14 9 chr1 177097951 177104325 -65560028 - L1PA8A LINE L1 -2 6444 6 2313 119 43 0 chr1 177104328 177104706 -65559647 - L1PB4 LINE L1 -117 6039 5645 347 145 14 0 chr1 177104741 177104810 -65559543 + (CA)n Simple_repeat Simple_repeat 2 71 0 2461 125 42 1 chr1 177104810 177105357 -65558996 - L1PB4 LINE L1 -483 5673 5106 399 224 67 30 chr1 177105417 177105551 -65558802 - MLT1J2 LTR MaLR -305 145 7 456 256 89 12 chr1 177106024 177106192 -65558161 - MLT1J2 LTR MaLR -268 182 2 188 234 234 13 chr1 177106198 177106275 -65558078 - MIR SINE MIR -44 218 125 371 107 0 0 chr1 177107207 177107263 -65557090 + Alu SINE Alu 1 56 -247 1298 149 0 0 chr1 177107263 177107508 -65556845 + AluSg/x SINE Alu 95 339 0 200 327 0 0 chr1 177108014 177108069 -65556284 + L3 LINE CR1 1512 1566 -11 689 299 9 14 chr1 177108518 177108729 -65555624 - MER63A DNA MER1_type 0 210 1 1928 153 7 3 chr1 177109231 177109532 -65554821 - AluSx SINE Alu -10 302 1 2031 138 28 0 chr1 177109532 177109858 -65554495 + L1PA15 LINE L1 5577 5911 -254 238 261 88 56 chr1 177110322 177110606 -65553747 + L1ME LINE L1 678 970 -5100 1577 195 10 14 chr1 177110705 177111002 -65553351 + AluJb SINE Alu 1 296 -16 325 309 28 59 chr1 177111020 177111344 -65553009 + L1ME LINE L1 966 1279 -4803 249 257 119 0 chr1 177111404 177111513 -65552840 + L1MC4 LINE L1 7050 7171 -871 2156 96 0 59 chr1 177111515 177111838 -65552515 + AluSc SINE Alu 5 308 -1 315 154 66 110 chr1 177111863 177111999 -65552354 + L1MC4 LINE L1 7913 8042 0 524 271 28 0 chr1 177112379 177112556 -65551797 - L1M4 LINE L1 -2114 4032 3851 4426 182 36 18 chr1 177112570 177113380 -65550973 - L1MB3 LINE L1 -3 6180 5386 726 145 4 183 chr1 177113380 177113615 -65550738 + 7SK RNA RNA 1 193 0 4426 182 36 18 chr1 177113615 177114482 -65549871 - L1MB3 LINE L1 -797 5386 4457 5259 154 20 34 chr1 177114488 177115419 -65548934 - L1MA6 LINE L1 -6 7010 6086 1923 148 3 13 chr1 177115419 177115717 -65548636 - AluSx SINE Alu -17 295 1 5259 154 20 34 chr1 177115717 177116374 -65547979 - L1MA6 LINE L1 -930 6086 5422 * 8140 147 146 8 chr1 177116357 177117966 -65546387 - L1MA6 LINE L1 -5031 1832 1 562 91 45 0 chr1 177117977 177118087 -65546266 - L1M LINE L1 -937 5368 5254 4585 174 55 11 chr1 177118088 177119135 -65545218 - L1MB3 LINE L1 -1977 4169 3076 7652 116 56 69 chr1 177119175 177121914 -65542439 - pTR5 LTR ERV1 0 8399 504 6320 73 3 8 chr1 177121927 177123486 -65540867 - HERV9 LTR ERV1 -1094 7305 5677 1685 253 4 28 chr1 177123486 177124162 -65540191 - L1 LINE L1 -2631 3751 3092 10069 162 59 59 chr1 177124164 177126902 -65537451 - L1 LINE L1 -3647 2735 5 4636 249 106 48 chr1 177126885 177129200 -65535153 - L1MEc LINE L1 -2291 3924 1745 * 1330 227 91 73 chr1 177129200 177129694 -65534659 - MLT1D LTR MaLR -2 503 1 4636 249 106 48 chr1 177129694 177130802 -65533551 - L1MEc LINE L1 -4470 1745 287 216 0 0 0 chr1 177130802 177130826 -65533527 + (TCTCC)n Simple_repeat Simple_repeat 4 27 0 4636 249 106 48 chr1 177130826 177131096 -65533257 - L1MEc LINE L1 -5928 287 34 214 224 0 0 chr1 177131609 177131658 -65532695 - L2 LINE L2 0 3313 3265 2573 89 0 3 chr1 177131913 177132261 -65532092 - L1PB1 LINE L1 -5 6146 5800 1227 227 66 50 chr1 177132981 177133602 -65530751 + L1M4 LINE L1 3587 4997 -1149 1770 209 41 57 chr1 177133671 177134184 -65530169 + MLT1D LTR MaLR 1 505 0 818 269 64 76 chr1 177134845 177135157 -65529196 - MLT1J LTR MaLR -31 480 175 4882 90 6 16 chr1 177135157 177135824 -65528529 - PABL_A LTR ERV1 0 660 1 818 269 64 76 chr1 177135824 177135995 -65528358 - MLT1J LTR MaLR -336 175 3 235 264 77 44 chr1 177136025 177136116 -65528237 - L2 LINE L2 -33 3280 3187 189 323 89 16 chr1 177136256 177136380 -65527973 - L2 LINE L2 -260 3012 2880 203 276 52 17 chr1 177136423 177136481 -65527872 - L2 LINE L2 -5 3308 3249 305 287 57 51 chr1 177136494 177136651 -65527702 + MIR3 SINE MIR 41 198 -10 482 311 160 0 chr1 177136811 177137023 -65527330 - MIR SINE MIR -15 247 2 601 197 36 7 chr1 177137254 177137391 -65526962 + L1MB8 LINE L1 6035 6175 -3 852 184 43 6 chr1 177137513 177137676 -65526677 - MLT1A1 LTR MaLR 0 365 197 252 0 0 0 chr1 177137676 177137704 -65526649 + (T)n Simple_repeat Simple_repeat 1 28 0 263 89 44 0 chr1 177137709 177137754 -65526599 - L1MB7 LINE L1 0 6184 6138 3283 31 5 0 chr1 177137770 177138154 -65526199 - L1PA4 LINE L1 0 6155 5770 1317 211 65 56 chr1 177138223 177138579 -65525774 + MLT1A1 LTR MaLR 6 364 -1 806 166 7 7 chr1 177138579 177138718 -65525635 - MLT1A1 LTR MaLR -226 139 1 496 274 173 28 chr1 177139006 177139261 -65525092 + L3 LINE CR1 1068 1359 -218 508 280 17 40 chr1 177140020 177140195 -65524158 + MER5A DNA MER1_type 19 189 0 385 290 28 9 chr1 177140328 177140435 -65523918 + MER81 DNA DNA 2 110 -4 201 147 0 0 chr1 177140975 177141009 -65523344 + (TTC)n Simple_repeat Simple_repeat 3 36 0 422 357 70 48 chr1 177142509 177142823 -65521530 + L2 LINE L2 2951 3271 -1 327 303 61 53 chr1 177142827 177142906 -65521447 - MIR SINE MIR 0 262 185 258 32 0 0 chr1 177142906 177142937 -65521416 + (TG)n Simple_repeat Simple_repeat 2 32 0 327 303 61 53 chr1 177142937 177143085 -65521268 - MIR SINE MIR -77 185 36 461 378 25 0 chr1 177144568 177144809 -65519544 - MIR SINE MIR -8 254 8 621 268 0 7 chr1 177146009 177146151 -65518202 - FLAM_A SINE Alu -1 141 1 372 227 195 19 chr1 177155067 177155221 -65509132 - MER5A DNA MER1_type -7 182 2 993 163 259 52 chr1 177156615 177156904 -65507449 + MLT1A2 LTR MaLR 14 362 -12 324 362 31 8 chr1 177157247 177157374 -65506979 + MIR3 SINE MIR 30 159 -49 576 0 0 0 chr1 177157377 177157441 -65506912 + (TA)n Simple_repeat Simple_repeat 2 65 0 2412 85 0 0 chr1 177157469 177157763 -65506590 + AluY SINE Alu 1 294 -17 529 206 109 11 chr1 177160087 177160262 -65504091 - Charlie5 DNA MER1_type -34 2578 2387 2369 84 0 7 chr1 177161723 177162022 -65502331 - AluY SINE Alu -14 297 1 25 0 0 0 chr1 177162899 177162924 -65501429 + AT_rich Low_complexity Low_complexity 1 25 0 1491 188 35 11 chr1 177164060 177164342 -65500011 + AluJo SINE Alu 7 295 -17 400 323 65 3 chr1 177164491 177164698 -65499655 + L2 LINE L2 2770 2985 -287 181 239 14 99 chr1 177164808 177164879 -65499474 + L2 LINE L2 3208 3272 -41 307 337 110 24 chr1 177164977 177165672 -65498681 + L2 LINE L2 2460 3272 0 2272 65 32 0 chr1 177165819 177166098 -65498255 + AluY SINE Alu 16 303 -8 317 274 70 65 chr1 177166740 177166926 -65497427 + MIR SINE MIR 6 192 -70 197 268 138 41 chr1 177168004 177168127 -65496226 - L2 LINE L2 -2 3311 3177 200 238 0 0 chr1 177169156 177169198 -65495155 - L2 LINE L2 -10 3303 3262 191 88 29 0 chr1 177169701 177169735 -65494618 + (TTG)n Simple_repeat Simple_repeat 2 36 0 351 0 0 0 chr1 177173359 177173398 -65490955 + (TG)n Simple_repeat Simple_repeat 2 40 0 344 248 59 10 chr1 177175494 177175595 -65488758 - MIR SINE MIR -78 184 79 1041 203 11 0 chr1 177176181 177176368 -65487985 - MER58A DNA MER1_type -35 189 1 1380 224 50 3 chr1 177177355 177177654 -65486699 - MER58B DNA MER1_type -28 313 1 235 250 0 18 chr1 177177984 177178040 -65486313 + MLT1K LTR MaLR 154 208 -380 326 276 115 43 chr1 177178089 177178368 -65485985 + MLT1L LTR MaLR 315 613 -2 741 259 36 32 chr1 177178546 177178824 -65485529 + MLT1J LTR MaLR 226 504 -7 244 276 10 61 chr1 177179117 177179215 -65485138 + L2 LINE L2 3173 3265 -7 614 156 0 0 chr1 177181562 177181652 -65482701 - 5S rRNA rRNA -31 90 1 916 138 0 0 chr1 177183639 177183769 -65480584 + FLAM_C SINE Alu 2 131 -2 545 293 16 37 chr1 177183986 177184174 -65480179 - MIR3 SINE MIR -6 202 19 246 276 73 65 chr1 177184667 177184790 -65479563 + MIR SINE MIR 1 124 -138 245 208 19 0 chr1 177184864 177184917 -65479436 + CT-rich Low_complexity Low_complexity 2 55 0 912 145 17 0 chr1 177185098 177185270 -65479083 + L1MA4 LINE L1 6121 6295 -5 309 300 40 79 chr1 177185333 177185560 -65478793 - L3 LINE CR1 -3 1574 1357 28 29 0 0 chr1 177188767 177188802 -65475551 + AT_rich Low_complexity Low_complexity 1 35 0 317 319 21 28 chr1 177190049 177190190 -65474163 - L3 LINE CR1 -219 1358 1219 22 70 0 0 chr1 177190909 177190952 -65473401 + AT_rich Low_complexity Low_complexity 1 43 0 427 261 14 50 chr1 177190955 177191095 -65473258 - L1MA10 LINE L1 -4 6330 6178 265 294 63 40 chr1 177191521 177191647 -65472706 + HAL1 LINE L1 855 983 -1524 264 311 29 10 chr1 177191742 177191845 -65472508 - MIR SINE MIR -4 258 154 277 190 69 0 chr1 177192022 177192080 -65472273 - MIR SINE MIR -93 169 108 214 320 0 0 chr1 177192341 177192416 -65471937 + (TATAG)n Simple_repeat Simple_repeat 1 75 0 513 296 111 6 chr1 177192429 177192601 -65471752 + MIR SINE MIR 28 217 -45 201 343 27 0 chr1 177192697 177192770 -65471583 + MIR SINE MIR 82 156 -106 315 49 0 0 chr1 177193784 177193825 -65470528 + (CA)n Simple_repeat Simple_repeat 1 41 0 262 321 99 0 chr1 177195681 177195812 -65468541 - L2 LINE L2 -9 3304 3161 186 336 66 57 chr1 177195832 177195954 -65468399 + L2 LINE L2 3150 3272 0 428 285 54 15 chr1 177197457 177197587 -65466766 + MIR SINE MIR 57 191 -71 198 195 0 24 chr1 177197638 177197679 -65466674 + L2 LINE L2 3223 3262 -10 212 140 40 20 chr1 177198297 177198347 -65466006 - MIR3 SINE MIR -8 200 150 345 321 93 0 chr1 177199657 177199797 -65464556 - MIR SINE MIR -66 196 44 384 301 32 16 chr1 177199814 177200000 -65464353 - MER5A DNA MER1_type 0 189 1 255 246 16 0 chr1 177200452 177200513 -65463840 + MIR SINE MIR 61 122 -140 278 322 0 0 chr1 177201278 177201368 -65462985 + (CA)n Simple_repeat Simple_repeat 1 90 0 259 271 0 29 chr1 177201482 177201552 -65462801 + L2 LINE L2 3245 3312 -1 540 224 195 19 chr1 177203530 177203735 -65460618 - MIR SINE MIR -10 252 12 347 236 178 32 chr1 177203785 177203942 -65460411 - MIR3 SINE MIR -16 192 13 465 333 41 14 chr1 177204299 177204446 -65459907 - L2 LINE L2 0 3272 3122 23 0 0 0 chr1 177205069 177205092 -65459261 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 177205743 177205764 -65458589 + AT_rich Low_complexity Low_complexity 1 21 0 447 320 158 13 chr1 177206171 177206399 -65457954 - MIR SINE MIR 0 262 2 184 171 29 0 chr1 177206405 177206440 -65457913 - L2 LINE L2 -554 2760 2725 22 0 0 0 chr1 177207863 177207885 -65456468 + AT_rich Low_complexity Low_complexity 1 22 0 435 214 0 0 chr1 177208795 177208879 -65455474 - AluJ/FLAM SINE Alu -228 84 1 456 249 226 46 chr1 177211786 177212003 -65452350 - MIR SINE MIR -6 256 1 180 200 0 0 chr1 177216841 177216886 -65447467 + CT-rich Low_complexity Low_complexity 2 46 0 352 263 0 0 chr1 177217345 177217425 -65446928 - MIR SINE MIR -108 154 75 255 322 0 38 chr1 177218365 177218548 -65445805 + (TTGGGG)n Simple_repeat Simple_repeat 2 177 0 210 293 22 39 chr1 177218640 177218821 -65445532 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 597 228 8 16 chr1 177218948 177219075 -65445278 - MIR3 SINE MIR -5 203 78 209 343 0 43 chr1 177220044 177220114 -65444239 - MIR SINE MIR -90 172 106 317 327 18 68 chr1 177223565 177223749 -65440604 - MIR SINE MIR -56 152 18 184 264 75 0 chr1 177224886 177224939 -65439414 - L2 LINE L2 0 3313 3257 212 208 21 0 chr1 177224946 177224994 -65439359 + L2 LINE L2 2368 2416 -898 1846 284 127 38 chr1 177225663 177227000 -65437353 + L2 LINE L2 1797 3313 0 320 363 31 38 chr1 177227755 177227915 -65436438 - MIR SINE MIR -56 206 48 256 283 18 58 chr1 177228285 177228387 -65435966 - MIR SINE MIR -83 125 17 4219 159 57 12 chr1 177229030 177229811 -65434542 + MER21B LTR ERV1 4 854 -9 399 292 54 24 chr1 177230562 177230730 -65433623 - MIR SINE MIR -65 197 25 188 330 23 23 chr1 177230822 177230910 -65433443 + MIR SINE MIR 175 262 0 207 131 66 33 chr1 177230938 177230999 -65433354 - MIR SINE MIR -13 249 187 215 238 0 0 chr1 177234011 177234053 -65430300 - L2 LINE L2 -17 3296 3255 241 258 79 11 chr1 177234244 177234333 -65430020 + MIR3 SINE MIR 4 98 -110 396 0 0 0 chr1 177234546 177234590 -65429763 + (TG)n Simple_repeat Simple_repeat 2 45 0 24 0 0 0 chr1 177236889 177236913 -65427440 + AT_rich Low_complexity Low_complexity 1 24 0 1660 244 58 68 chr1 177238533 177239205 -65425148 + MER21B LTR ERV1 92 756 -107 745 262 167 36 chr1 177241176 177241814 -65422539 + L2 LINE L2 2591 3312 -1 549 284 6 12 chr1 177242624 177242793 -65421560 - MIR SINE MIR 0 262 95 935 179 20 0 chr1 177243410 177243561 -65420792 + FRAM SINE Alu 1 154 -12 265 284 116 42 chr1 177244043 177244328 -65420025 + L2 LINE L2 2443 2748 -566 261 292 181 7 chr1 177244371 177244515 -65419838 - MIR SINE MIR -48 214 46 205 336 74 0 chr1 177245298 177245420 -65418933 + L2 LINE L2 3136 3266 -6 259 301 80 9 chr1 177246358 177246471 -65417882 - MIR SINE MIR -141 121 1 211 322 0 0 chr1 177248929 177249020 -65415333 - MIR SINE MIR -55 153 63 236 286 31 20 chr1 177249345 177249443 -65414910 - MIR3 SINE MIR -15 193 95 635 224 112 12 chr1 177249739 177249909 -65414444 + MIR SINE MIR 5 191 -71 1462 271 62 29 chr1 177250017 177250108 -65414245 - L2 LINE L2 -4 3309 3222 561 242 8 0 chr1 177250108 177250236 -65414117 + FLAM_A SINE Alu 4 132 -1 1462 271 62 29 chr1 177250236 177251080 -65413273 - L2 LINE L2 -91 3222 2343 248 218 11 115 chr1 177252667 177252754 -65411599 + L2 LINE L2 3155 3232 -40 1216 247 173 52 chr1 177253004 177253742 -65410611 + L2 LINE L2 2007 2834 -480 377 314 99 0 chr1 177253827 177254018 -65410335 + L2 LINE L2 3104 3313 0 228 303 0 0 chr1 177254221 177254287 -65410066 - L3b LINE CR1 -195 1388 1323 189 337 58 0 chr1 177254691 177254777 -65409576 + MIR SINE MIR 87 177 -85 808 200 121 35 chr1 177255367 177255657 -65408696 + MER5C DNA MER1_type 10 324 0 209 344 11 0 chr1 177256002 177256095 -65408258 + CT-rich Low_complexity Low_complexity 2 95 0 296 300 80 0 chr1 177256836 177256986 -65407367 + L1MEd LINE L1 3 164 -5955 * 4514 255 70 29 chr1 177256983 177257236 -65407117 - L1M4 LINE L1 -902 5244 5003 1939 133 28 0 chr1 177257236 177257521 -65406832 - AluSx SINE Alu -19 293 1 4514 255 70 29 chr1 177257521 177258460 -65405893 - L1M4 LINE L1 -1143 5003 3956 1715 183 86 21 chr1 177258460 177258832 -65405521 - MSTD LTR MaLR 0 396 1 4514 255 70 29 chr1 177258832 177259394 -65404959 - L1M4 LINE L1 -2190 3956 3418 * 6512 172 28 11 chr1 177259391 177261640 -65402713 - L1PA16 LINE L1 0 6166 3883 431 254 66 20 chr1 177261615 177261812 -65402541 - L1M4 LINE L1 -2685 3461 3256 * 354 236 73 8 chr1 177261881 177262004 -65402349 + L1M4 LINE L1 4391 4521 -1625 260 238 79 61 chr1 177262013 177262227 -65402126 + L1MEd LINE L1 1040 1257 -4862 8064 84 16 5 chr1 177262355 177264214 -65400139 + L1PA7 LINE L1 4279 6151 -3 2292 158 38 25 chr1 177264214 177264679 -65399674 + L1MA7 LINE L1 5812 6291 0 22 0 0 0 chr1 177265424 177265446 -65398907 + AT_rich Low_complexity Low_complexity 1 22 0 2491 80 3 3 chr1 177266615 177266926 -65397427 + AluSp SINE Alu 1 311 -2 238 267 40 0 chr1 177267069 177267144 -65397209 + MIR SINE MIR 23 100 -108 5418 118 13 51 chr1 177268432 177269769 -65394584 + L1PA15 LINE L1 4861 6162 -3 2749 141 14 9 chr1 177270239 177270665 -65393688 + MSTA LTR MaLR 1 428 0 243 269 290 0 chr1 177271067 177271160 -65393193 + MLT1I LTR MaLR 4 123 -286 181 189 75 0 chr1 177271235 177271288 -65393065 - L2 LINE L2 -429 2884 2828 434 229 139 0 chr1 177271387 177271509 -65392844 - MIR SINE MIR -88 174 36 195 331 146 0 chr1 177271584 177271714 -65392639 - L2 LINE L2 -571 2743 2595 199 335 142 7 chr1 177271843 177271998 -65392355 - L2 LINE L2 -936 2378 2203 1429 161 82 36 chr1 177273068 177273347 -65391006 - AluJb SINE Alu -1 311 20 690 254 53 5 chr1 177274319 177274508 -65389845 - MIR SINE MIR -15 247 50 235 270 108 0 chr1 177276611 177276685 -65387668 - L2 LINE L2 0 3313 3232 25 0 0 0 chr1 177277530 177277555 -65386798 + AT_rich Low_complexity Low_complexity 1 25 0 2360 74 0 49 chr1 177278779 177279104 -65385249 - AluY SINE Alu -2 309 1 260 91 91 0 chr1 177279655 177279699 -65384654 + L2 LINE L2 3264 3311 -2 246 176 0 0 chr1 177279958 177280009 -65384344 + (CA)n Simple_repeat Simple_repeat 2 52 0 337 287 37 83 chr1 177280015 177280231 -65384122 + LTR16C LTR ERVL 221 426 -65 4040 97 28 0 chr1 177280825 177281363 -65382990 - L1PA14 LINE L1 -13 6148 5596 207 0 0 0 chr1 177281451 177281474 -65382879 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 403 250 179 13 chr1 177281718 177281874 -65382479 + L2 LINE L2 3118 3299 -14 1769 163 29 0 chr1 177281876 177282152 -65382201 + AluJo SINE Alu 1 284 -28 195 306 204 67 chr1 177283522 177283777 -65380576 - L2 LINE L2 -18 3254 2965 2034 132 10 3 chr1 177284166 177284454 -65379899 - AluJo SINE Alu -22 290 1 4414 164 76 8 chr1 177284553 177285357 -65378996 + L1MD2 LINE L1 5501 6359 0 227 316 45 32 chr1 177286224 177286379 -65377974 - L1P LINE L1 -1088 5058 4902 273 231 13 26 chr1 177286416 177286494 -65377859 + (TA)n Simple_repeat Simple_repeat 2 78 0 421 351 91 11 chr1 177286504 177286780 -65377573 - L1M4 LINE L1 -1357 4789 4492 510 211 88 9 chr1 177286799 177286913 -65377440 + L2 LINE L2 3182 3304 -9 238 288 0 0 chr1 177287296 177287355 -65376998 - L2 LINE L2 -954 2360 2302 1652 122 4 4 chr1 177287441 177287695 -65376658 - L1MA6 LINE L1 0 6300 6047 318 287 0 20 chr1 177287938 177288014 -65376339 + (TATG)n Simple_repeat Simple_repeat 2 77 -23 237 65 0 0 chr1 177288014 177288045 -65376308 + (TG)n Simple_repeat Simple_repeat 2 32 0 318 287 0 20 chr1 177288045 177288069 -65376284 + (TATG)n Simple_repeat Simple_repeat 77 100 0 291 167 273 30 chr1 177288782 177288848 -65375505 + L2 LINE L2 3193 3274 -39 290 279 135 0 chr1 177289026 177289130 -65375223 + MIR SINE MIR 71 188 -74 759 289 0 5 chr1 177289830 177290020 -65374333 + MIR SINE MIR 64 252 -10 654 298 57 20 chr1 177290535 177290783 -65373570 - MIR SINE MIR -2 260 4 372 279 37 43 chr1 177290796 177290957 -65373396 + MIR3 SINE MIR 20 179 -29 527 332 63 9 chr1 177291303 177291526 -65372827 + MIR SINE MIR 15 249 -13 210 295 80 36 chr1 177292203 177292315 -65372038 + L2 LINE L2 3176 3292 -21 253 377 0 0 chr1 177292853 177292930 -65371423 + L2 LINE L2 3188 3264 -8 227 328 0 16 chr1 177293324 177293385 -65370968 + MIR SINE MIR 25 84 -124 407 229 105 59 chr1 177294722 177294875 -65369478 - MIR SINE MIR -94 168 9 2044 263 83 62 chr1 177295624 177296152 -65368201 - HAL1 LINE L1 0 2507 1992 7608 134 44 2 chr1 177296152 177297334 -65367019 - Tigger3b DNA MER2_type 0 1231 1 2044 263 83 62 chr1 177297334 177297943 -65366410 - HAL1 LINE L1 -515 1992 1346 35 41 0 0 chr1 177298010 177298059 -65366294 + AT_rich Low_complexity Low_complexity 1 49 0 2489 49 7 3 chr1 177298194 177298499 -65365854 - AluY SINE Alu -5 306 1 277 318 31 8 chr1 177298571 177298700 -65365653 - L1P4 LINE L1 -351 5810 5679 517 277 48 88 chr1 177298708 177299310 -65365043 - HAL1 LINE L1 -1166 1341 764 1181 222 157 32 chr1 177299334 177299644 -65364709 + MLT1D LTR MaLR 20 401 -104 2460 112 57 14 chr1 177299644 177299993 -65364360 - THE1B LTR MaLR 0 364 1 1181 222 157 32 chr1 177299993 177300114 -65364239 + MLT1D LTR MaLR 400 505 0 1254 253 121 65 chr1 177300163 177300839 -65363514 - HAL1 LINE L1 -1792 715 2 189 333 67 0 chr1 177301399 177301459 -65362894 + L2 LINE L2 3171 3234 -38 308 293 13 0 chr1 177301592 177301667 -65362686 + L2 LINE L2 3192 3267 -5 189 309 62 21 chr1 177302062 177302159 -65362194 - MIR SINE MIR -80 182 82 4232 100 7 14 chr1 177303187 177303769 -65360584 - L1PA13 LINE L1 -9 6154 5577 192 200 0 25 chr1 177304486 177304526 -65359827 + L3 LINE CR1 1468 1506 -71 223 273 45 30 chr1 177304901 177304967 -65359386 + L2 LINE L2 3212 3278 -35 591 254 155 21 chr1 177306802 177306995 -65357358 - MER20 DNA MER1_type 0 219 1 481 271 44 112 chr1 177307355 177307606 -65356747 - L2 LINE L2 -5 3267 3034 1002 236 80 73 chr1 177308178 177308577 -65355776 + LTR16A1 LTR ERVL 56 457 0 359 292 23 8 chr1 177308795 177308925 -65355428 - MIR3 SINE MIR -28 180 49 23 0 0 0 chr1 177310227 177310250 -65354103 + AT_rich Low_complexity Low_complexity 1 23 0 439 311 104 0 chr1 177310946 177311110 -65353243 - MIR3 SINE MIR -23 185 5 2528 81 0 0 chr1 177311190 177311500 -65352853 + AluSg SINE Alu 1 310 0 196 350 30 20 chr1 177313148 177313248 -65351105 + L3 LINE CR1 1474 1574 -3 2315 88 0 3 chr1 177313816 177314111 -65350242 + AluY SINE Alu 1 294 -17 2224 132 29 42 chr1 177314218 177314598 -65349755 - THE1C LTR MaLR 0 375 1 540 332 100 43 chr1 177315183 177315623 -65348730 + L2 LINE L2 2807 3271 -1 522 129 0 0 chr1 177315714 177315799 -65348554 + (GGGA)n Simple_repeat Simple_repeat 4 88 0 685 254 123 9 chr1 177316765 177316993 -65347360 - MIR SINE MIR 0 262 9 188 289 0 0 chr1 177317005 177317050 -65347303 + MIR SINE MIR 216 260 -2 355 276 147 29 chr1 177317221 177317391 -65346962 + L2 LINE L2 3124 3313 0 797 218 67 0 chr1 177317474 177317639 -65346714 + MER5A DNA MER1_type 1 176 -13 203 298 0 57 chr1 177317708 177317832 -65346521 + GA-rich Low_complexity Low_complexity 4 120 0 445 297 93 11 chr1 177318918 177319100 -65345253 - MIR SINE MIR -44 218 22 411 272 46 38 chr1 177319235 177319393 -65344960 + MIR SINE MIR 20 190 -63 2065 142 0 0 chr1 177319408 177319704 -65344649 + AluSx SINE Alu 1 296 -16 190 268 175 52 chr1 177320308 177320405 -65343948 + L2 LINE L2 3150 3258 -14 24 32 0 0 chr1 177320634 177320665 -65343688 + AT_rich Low_complexity Low_complexity 1 31 0 283 259 12 12 chr1 177320798 177320879 -65343474 - MIR SINE MIR -105 103 23 349 239 102 25 chr1 177323345 177323542 -65340811 - L1ME LINE L1 -696 5474 5263 23 54 0 0 chr1 177323620 177323657 -65340696 + AT_rich Low_complexity Low_complexity 1 37 0 247 314 23 0 chr1 177324186 177324272 -65340081 + L2 LINE L2 3221 3308 -5 180 111 0 0 chr1 177325636 177325663 -65338690 + L2 LINE L2 2726 2752 -562 223 189 0 19 chr1 177325958 177326011 -65338342 + L2 LINE L2 3262 3313 0 347 196 157 0 chr1 177326100 177326202 -65338151 - L1ME4a LINE L1 -2 6119 6002 232 245 0 0 chr1 177326458 177326511 -65337842 - MIR3 SINE MIR 0 208 156 252 274 104 52 chr1 177326664 177326799 -65337554 - MIR3 SINE MIR -46 162 21 15050 126 38 20 chr1 177326837 177328884 -65335469 + Tigger1 DNA MER2_type 1 2096 -322 2338 163 50 17 chr1 177328884 177329301 -65335052 + MSTB1 LTR MaLR 1 431 -1 15050 126 38 20 chr1 177329301 177329628 -65334725 + Tigger1 DNA MER2_type 2096 2416 -2 1690 154 68 38 chr1 177330460 177330829 -65333524 + MLT1B LTR MaLR 3 382 -8 250 310 23 23 chr1 177331379 177331466 -65332887 + MIR SINE MIR 97 183 -79 181 379 23 8 chr1 177331886 177332018 -65332335 + L2 LINE L2 2677 2810 -504 265 250 60 0 chr1 177332236 177332320 -65332033 - MER91C DNA MER1_type -50 90 2 2043 253 73 33 chr1 177333128 177334201 -65330152 + L2 LINE L2 2196 3312 -1 453 298 8 0 chr1 177334372 177334493 -65329860 - L2 LINE L2 -5 3308 3187 2253 116 3 3 chr1 177334610 177334912 -65329441 - AluSx SINE Alu -10 302 1 188 273 80 57 chr1 177335795 177335883 -65328470 - L2 LINE L2 -2 3270 3181 241 132 0 0 chr1 177335911 177335949 -65328404 + L1M4 LINE L1 2223 2260 -3886 878 210 95 48 chr1 177335956 177336356 -65327997 + L1M4 LINE L1 3074 3492 -2654 2207 113 7 10 chr1 177336452 177336762 -65327591 - AluSc SINE Alu 0 309 1 203 0 37 0 chr1 177336836 177336863 -65327490 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2186 261 96 23 chr1 177336867 177337712 -65326641 + L1M4 LINE L1 3506 4455 -1691 2289 103 0 0 chr1 177337712 177338012 -65326341 + AluSg1 SINE Alu 1 300 -9 2186 261 96 23 chr1 177338012 177338227 -65326126 + L1M4 LINE L1 4455 4653 -1493 8876 124 41 11 chr1 177338227 177338977 -65325376 + Tigger2 DNA MER2_type 1 812 -1906 212 0 36 0 chr1 177338977 177339005 -65325348 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 8876 124 41 11 chr1 177339005 177339649 -65324704 + Tigger2 DNA MER2_type 812 1436 -1282 1760 167 91 0 chr1 177339632 177339961 -65324392 + Tigger2 DNA MER2_type 2350 2708 -10 * 1050 256 59 26 chr1 177339961 177340382 -65323971 + L1M4 LINE L1 4650 5084 -1062 239 297 0 0 chr1 177341856 177341920 -65322433 + L2 LINE L2 3250 3313 0 255 318 90 53 chr1 177343339 177343528 -65320825 + MIR SINE MIR 44 239 -23 292 245 96 0 chr1 177344979 177345073 -65319280 + LTR33 LTR ERVL 21 123 -398 458 311 33 14 chr1 177345159 177345371 -65318982 + LTR33 LTR ERVL 306 521 0 269 252 26 113 chr1 177345507 177345658 -65318695 - MIR SINE MIR -46 216 79 496 336 46 38 chr1 177346047 177346413 -65317940 - L2 LINE L2 -19 3294 2926 772 304 92 37 chr1 177346501 177347117 -65317236 - L2 LINE L2 -511 2803 2154 584 233 14 14 chr1 177349877 177350023 -65314330 + MIR SINE MIR 117 262 0 1362 196 86 78 chr1 177350935 177351317 -65313036 + MLT1B LTR MaLR 1 385 -5 195 162 0 0 chr1 177351614 177351651 -65312702 + (TA)n Simple_repeat Simple_repeat 2 38 0 12140 34 3 0 chr1 177351848 177354061 -65310292 - L1PA3 LINE L1 0 6155 3953 2727 30 0 9 chr1 177354061 177354395 -65309958 + L1PA3 LINE L1 3606 3936 -2210 541 380 12 4 chr1 177354767 177355012 -65309341 - MIR SINE MIR -13 249 3 1654 191 96 117 chr1 177355902 177356314 -65308039 + L1MD3 LINE L1 7331 7729 -266 2448 123 11 26 chr1 177356314 177356695 -65307658 + THE1C LTR MaLR 1 375 0 1654 191 96 117 chr1 177356695 177356873 -65307480 + L1MD3 LINE L1 7729 7909 -86 637 218 60 63 chr1 177356873 177357157 -65307196 + Charlie7 DNA MER1_type 1814 2096 -516 495 159 0 11 chr1 177357273 177357361 -65306992 + Tigger4(Zombi) DNA MER2_type 2645 2731 0 1164 264 123 33 chr1 177357363 177358141 -65306212 - L2 LINE L2 -31 3282 2432 310 130 0 116 chr1 177358287 177358356 -65305997 + L2 LINE L2 3207 3267 -5 1523 276 112 28 chr1 177358718 177359817 -65304536 + L2 LINE L2 2118 3308 -5 388 322 100 30 chr1 177359965 177360235 -65304118 - L2 LINE L2 -20 3293 3005 3216 94 2 26 chr1 177360259 177360727 -65303626 + L1PA11 LINE L1 5718 6174 0 244 274 83 60 chr1 177361571 177361659 -65302694 + MIR SINE MIR 40 125 -137 2459 114 8 22 chr1 177361659 177362028 -65302325 + THE1B LTR MaLR 1 364 0 244 274 83 60 chr1 177362028 177362137 -65302216 + MIR SINE MIR 125 255 -7 363 44 0 0 chr1 177363064 177363109 -65301244 + (CA)n Simple_repeat Simple_repeat 2 46 0 278 299 104 35 chr1 177364795 177364939 -65299414 - MIR SINE MIR -50 212 59 1893 131 4 0 chr1 177364964 177365223 -65299130 + AluSq SINE Alu 1 260 -53 29 0 0 0 chr1 177365459 177365488 -65298865 + AT_rich Low_complexity Low_complexity 1 29 0 2340 96 0 0 chr1 177365825 177366118 -65298235 + AluSg SINE Alu 1 293 -17 202 259 28 74 chr1 177366514 177366622 -65297731 - MIR SINE MIR -46 216 114 182 182 0 23 chr1 177367556 177367600 -65296753 - L2 LINE L2 -213 3059 3017 606 280 52 5 chr1 177367768 177367961 -65296392 - MIR SINE MIR -5 257 56 30 45 0 0 chr1 177368069 177368113 -65296240 + AT_rich Low_complexity Low_complexity 1 44 0 226 167 0 0 chr1 177368714 177368750 -65295603 + HsTC2 DNA Tc2 1863 1898 0 180 0 0 0 chr1 177369225 177369245 -65295108 + (TA)n Simple_repeat Simple_repeat 2 21 0 940 176 41 0 chr1 177369919 177370089 -65294264 - FAM SINE Alu -8 41 1 596 221 70 23 chr1 177370445 177370617 -65293736 - MER5A DNA MER1_type 0 189 10 2401 50 0 0 chr1 177371749 177372060 -65292293 - AluY SINE Alu 0 311 1 4024 247 113 43 chr1 177372082 177374281 -65290072 + L2 LINE L2 942 3313 0 393 58 0 0 chr1 177376506 177376558 -65287795 + (TG)n Simple_repeat Simple_repeat 2 53 0 334 300 18 0 chr1 177376889 177376999 -65287354 + L2 LINE L2 3201 3312 -1 229 247 146 11 chr1 177378023 177378112 -65286241 - L3 LINE CR1 -2 1575 1475 211 293 66 31 chr1 177378130 177378282 -65286071 + MER5A DNA MER1_type 7 175 -14 295 254 0 90 chr1 177378306 177378428 -65285925 - MER5B DNA MER1_type 0 178 68 559 220 8 17 chr1 177380024 177380142 -65284211 - FLAM_A SINE Alu -16 117 1 565 200 29 14 chr1 177380872 177381012 -65283341 + L1ME LINE L1 5602 5743 -378 1833 143 3 49 chr1 177381083 177381391 -65282962 - AluJb SINE Alu -18 294 1 268 330 42 25 chr1 177382659 177382777 -65281576 + MIR SINE MIR 31 150 -58 202 329 24 12 chr1 177383365 177383447 -65280906 + L3 LINE CR1 1493 1575 -2 2381 101 0 0 chr1 177384621 177384917 -65279436 - AluSg SINE Alu -14 296 1 336 287 63 28 chr1 177385024 177385167 -65279186 + L2 LINE L2 3125 3272 0 5428 75 16 8 chr1 177385369 177386075 -65278278 - L1PA10 LINE L1 -15 6153 5443 689 115 204 51 chr1 177387570 177387727 -65276626 - MER53 DNA DNA 0 189 9 405 301 70 16 chr1 177388374 177388560 -65275793 + MIR SINE MIR 16 211 -51 1802 203 73 39 chr1 177388753 177389217 -65275136 + MLT1D LTR MaLR 26 505 0 279 293 27 0 chr1 177389561 177389636 -65274717 + MIR3 SINE MIR 121 197 -11 395 343 33 24 chr1 177390526 177390736 -65273617 - L2 LINE L2 -213 3059 2848 1509 186 7 41 chr1 177390756 177391051 -65273302 + AluJo SINE Alu 1 285 -27 213 39 0 0 chr1 177391051 177391077 -65273276 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 353 226 66 28 chr1 177391416 177391522 -65272831 + MLT1L LTR MaLR 102 211 -404 305 270 0 0 chr1 177391620 177391683 -65272670 + MER112 DNA MER1_type 3 65 -195 225 178 0 0 chr1 177391689 177391734 -65272619 + LTR66 LTR ERVL 394 438 -172 * 228 230 65 72 chr1 177391714 177391853 -65272500 + MER112 DNA MER1_type 66 203 -57 939 156 14 110 chr1 177392622 177392840 -65271513 - MER20 DNA MER1_type -22 197 1 347 338 21 14 chr1 177393326 177393468 -65270885 - MIR SINE MIR -102 160 18 234 225 0 0 chr1 177394405 177394445 -65269908 + MLT1K LTR MaLR 526 565 -23 8624 118 28 20 chr1 177394521 177395878 -65268475 + Tigger1 DNA MER2_type 1051 2418 0 301 220 100 33 chr1 177397194 177397344 -65267009 + L1ME4a LINE L1 5307 5466 -2319 328 314 41 16 chr1 177397350 177397544 -65266809 + L1ME4a LINE L1 5538 5736 -385 * 2146 208 83 12 chr1 177397530 177398382 -65265971 + L1ME1 LINE L1 5262 6334 0 3722 101 22 67 chr1 177398396 177399041 -65265312 - L1MB3 LINE L1 -2 6181 5566 359 206 55 62 chr1 177399055 177399201 -65265152 + L1ME4a LINE L1 5748 5892 -229 1059 103 7 0 chr1 177399313 177399458 -65264895 + L1PA8A LINE L1 5981 6126 -5 633 165 14 6 chr1 177399458 177399607 -65264746 + L1ME LINE L1 5672 5818 -321 259 326 0 0 chr1 177399683 177399775 -65264578 + L3 LINE CR1 576 667 -910 399 306 122 52 chr1 177399776 177400406 -65263947 + L3 LINE CR1 844 1517 -60 279 273 35 42 chr1 177401619 177401762 -65262591 + L2 LINE L2 2631 2772 -542 274 285 139 7 chr1 177401994 177402131 -65262222 + L2 LINE L2 3154 3308 -5 317 301 80 58 chr1 177402273 177402549 -65261804 - L3 LINE CR1 -267 1310 1029 268 302 47 23 chr1 177405458 177405587 -65258766 - MIR SINE MIR -109 153 22 202 167 24 0 chr1 177405809 177405851 -65258502 + L2 LINE L2 3213 3255 -17 393 352 7 14 chr1 177405891 177406036 -65258317 + L3 LINE CR1 320 463 -1114 1775 153 14 24 chr1 177406140 177406434 -65257919 + AluJb SINE Alu 1 291 -21 460 286 0 0 chr1 177406436 177406555 -65257798 + MIR SINE MIR 48 166 -96 3321 133 8 2 chr1 177406560 177407092 -65257261 + L1P LINE L1 3762 4296 -1850 2286 118 0 3 chr1 177409413 177409719 -65254634 + AluSx SINE Alu 1 305 -7 220 289 211 7 chr1 177410215 177410367 -65253986 + MIR3 SINE MIR 3 185 -23 418 240 199 14 chr1 177412758 177412904 -65251449 + MER5A DNA MER1_type 17 189 0 3834 169 69 20 chr1 177413352 177414095 -65250258 - L1MB7 LINE L1 0 6184 5398 1481 228 50 8 chr1 177414095 177414454 -65249899 - MLT1A2 LTR MaLR 0 374 1 3834 169 69 20 chr1 177414454 177414503 -65249850 - L1MB7 LINE L1 -786 5398 5353 890 175 20 75 chr1 177414537 177414737 -65249616 + MER5A DNA MER1_type 1 189 0 431 247 62 20 chr1 177414801 177414947 -65249406 + MER103 DNA DNA 1 152 -14 2498 110 16 8 chr1 177415066 177415438 -65248915 - THE1C LTR MaLR 0 375 1 1494 198 119 70 chr1 177415542 177415996 -65248357 - MLT1F LTR MaLR -38 504 29 407 138 0 0 chr1 177415997 177416055 -65248298 - MIR SINE MIR -181 81 24 1312 290 101 18 chr1 177416642 177416747 -65247606 - MER34 LTR ERV1 -1 541 446 1224 155 82 5 chr1 177416747 177416966 -65247387 - MER46A DNA MER2_type 0 236 1 1312 290 101 18 chr1 177416966 177417356 -65246997 - MER34 LTR ERV1 -96 446 5 186 71 0 0 chr1 177418427 177418455 -65245898 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 197 265 20 0 chr1 177418471 177418520 -65245833 - L2 LINE L2 0 3313 3264 186 200 0 0 chr1 177418792 177418827 -65245526 - L2 LINE L2 -407 2906 2872 269 219 16 16 chr1 177419358 177419422 -65244931 - L2 LINE L2 -1 3271 3208 296 263 13 0 chr1 177419889 177419965 -65244388 - MIR SINE MIR -30 232 156 653 200 14 7 chr1 177419975 177420115 -65244238 + MIR SINE MIR 92 232 -30 215 172 69 35 chr1 177420165 177420223 -65244130 - MIR3 SINE MIR -45 163 104 2379 109 3 0 chr1 177420439 177420751 -65243602 + AluSq SINE Alu 1 313 0 599 288 97 70 chr1 177421214 177421840 -65242513 + HAL1 LINE L1 838 1480 -1027 2176 118 3 0 chr1 177421851 177422138 -65242215 + AluSx SINE Alu 1 288 -24 924 85 16 0 chr1 177422864 177422993 -65241360 - L1PB2 LINE L1 -2 6149 6019 769 311 130 25 chr1 177423389 177424258 -65240095 + L1M4 LINE L1 4069 5028 -1118 317 304 48 48 chr1 177424593 177424823 -65239530 + L3b LINE CR1 1240 1469 -114 2051 124 0 3 chr1 177425439 177425749 -65238604 - AluSx SINE Alu 0 310 2 2760 84 3 3 chr1 177427169 177427524 -65236829 - THE1A LTR MaLR 0 355 1 12161 90 2 0 chr1 177427524 177429100 -65235253 - THE1A-int LTR MaLR 0 1580 1 2534 103 6 19 chr1 177429100 177429460 -65234893 - THE1A LTR MaLR 0 355 1 1968 152 53 3 chr1 177430084 177430426 -65233927 + MLT1A1 LTR MaLR 5 363 -2 425 253 74 19 chr1 177430624 177430786 -65233567 - MIR SINE MIR -15 247 77 563 269 63 40 chr1 177431149 177431372 -65232981 + MIR SINE MIR 2 229 -33 220 348 116 0 chr1 177432435 177432547 -65231806 + L2 LINE L2 3148 3272 0 634 274 55 7 chr1 177432691 177433055 -65231298 + MLT1J2 LTR MaLR 88 447 -3 21 0 0 0 chr1 177433277 177433298 -65231055 + AT_rich Low_complexity Low_complexity 1 21 0 420 294 19 95 chr1 177433862 177434073 -65230280 - MIR SINE MIR -66 196 2 442 319 120 55 chr1 177435466 177435965 -65228388 + L2 LINE L2 2713 3253 -19 445 245 20 0 chr1 177437268 177437370 -65226983 + MIR SINE MIR 65 168 -94 258 333 40 0 chr1 177437845 177437944 -65226409 + MIR SINE MIR 50 152 -110 193 283 0 0 chr1 177438759 177438805 -65225548 + L2 LINE L2 3268 3313 0 186 139 83 0 chr1 177439293 177439329 -65225024 + L2 LINE L2 3263 3301 -12 215 150 0 25 chr1 177439877 177439917 -65224436 + (TCTCC)n Simple_repeat Simple_repeat 3 41 0 328 317 140 29 chr1 177440042 177440405 -65223948 + L2 LINE L2 2678 3078 -194 197 278 37 0 chr1 177440469 177440523 -65223830 + L2 LINE L2 3248 3303 -10 497 290 30 15 chr1 177440959 177441090 -65223263 + MIR SINE MIR 24 156 -106 378 0 0 0 chr1 177441137 177441179 -65223174 + (TG)n Simple_repeat Simple_repeat 1 42 0 361 202 96 21 chr1 177441650 177441744 -65222609 - L2 LINE L2 -4 3268 3168 403 318 115 16 chr1 177442439 177442631 -65221722 + MIR SINE MIR 2 212 -50 305 311 13 73 chr1 177443003 177443154 -65221199 + MIR SINE MIR 1 142 -66 812 184 12 6 chr1 177443182 177443345 -65221008 - MER104 DNA Tc2 -1 179 16 315 274 74 42 chr1 177443820 177444010 -65220343 - L3 LINE CR1 -299 1278 1083 262 270 211 3 chr1 177444035 177444376 -65219977 + L1ME4a LINE L1 5709 6120 -1 360 209 0 0 chr1 177449251 177449318 -65215035 + MER103 DNA DNA 23 89 -77 252 0 0 0 chr1 177449347 177449375 -65214978 + (CA)n Simple_repeat Simple_repeat 1 28 0 272 306 68 48 chr1 177450904 177451051 -65213302 + L2 LINE L2 3164 3313 0 250 212 263 40 chr1 177451556 177451655 -65212698 + L2 LINE L2 3152 3272 0 2228 99 0 10 chr1 177451849 177452162 -65212191 + AluY SINE Alu 1 310 -1 2075 135 0 0 chr1 177454524 177454836 -65209517 + AluSx SINE Alu 1 312 0 206 233 0 0 chr1 177455768 177455811 -65208542 + CT-rich Low_complexity Low_complexity 1 43 0 686 330 95 20 chr1 177456749 177457016 -65207337 + L3 LINE CR1 1157 1459 -118 867 228 78 0 chr1 177457016 177457209 -65207144 + MER63A DNA MER1_type 2 209 -1 686 330 95 20 chr1 177457209 177457299 -65207054 + L3 LINE CR1 1459 1541 -36 770 250 0 6 chr1 177457707 177457875 -65206478 - MER5B DNA MER1_type 0 178 12 340 233 19 48 chr1 177457942 177458045 -65206308 - MIR3 SINE MIR 0 208 109 321 268 134 14 chr1 177458769 177458911 -65205442 + MIR3 SINE MIR 48 206 -2 351 252 129 50 chr1 177459866 177460005 -65204348 + MIR SINE MIR 107 256 -6 24 0 0 0 chr1 177461374 177461398 -65202955 + AT_rich Low_complexity Low_complexity 1 24 0 692 290 108 13 chr1 177461453 177461684 -65202669 + MIR SINE MIR 7 259 -3 355 312 42 60 chr1 177461694 177461909 -65202444 - MIR SINE MIR -7 255 45 876 228 9 58 chr1 177461999 177462223 -65202130 - MIR SINE MIR -2 260 48 248 190 35 17 chr1 177462302 177462360 -65201993 + L3 LINE CR1 1505 1563 -14 336 333 172 38 chr1 177462492 177462759 -65201594 + L3 LINE CR1 423 725 -852 356 209 0 0 chr1 177462847 177462914 -65201439 + MIR SINE MIR 85 151 -111 494 294 27 27 chr1 177462979 177463166 -65201187 + L3 LINE CR1 751 937 -640 374 246 201 50 chr1 177463379 177463578 -65200775 - L2 LINE L2 -181 3091 2863 186 363 75 12 chr1 177463653 177463733 -65200620 - MIR SINE MIR -108 100 16 722 138 46 31 chr1 177463733 177463863 -65200490 - MER3 DNA MER1_type -1 208 77 328 316 226 33 chr1 177463919 177464131 -65200222 + L3 LINE CR1 1264 1516 -61 261 0 0 0 chr1 177465370 177465399 -65198954 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 327 229 29 0 chr1 177465667 177465737 -65198616 - L2 LINE L2 -6 3266 3195 966 192 28 6 chr1 177466037 177466219 -65198134 + MER5A DNA MER1_type 1 186 -3 198 0 0 0 chr1 177466960 177466982 -65197371 + (A)n Simple_repeat Simple_repeat 1 22 0 482 274 170 0 chr1 177470530 177470665 -65193688 - MER5A DNA MER1_type -1 188 31 769 233 138 13 chr1 177470761 177470993 -65193360 - MIR SINE MIR 0 262 2 237 65 0 0 chr1 177474015 177474046 -65190307 + (A)n Simple_repeat Simple_repeat 1 31 0 201 210 16 32 chr1 177474667 177474729 -65189624 + (CGGG)n Simple_repeat Simple_repeat 4 64 0 284 119 17 0 chr1 177476125 177476184 -65188169 + (TG)n Simple_repeat Simple_repeat 1 60 0 251 232 0 30 chr1 177476199 177476298 -65188055 + T-rich Low_complexity Low_complexity 5 100 0 364 261 11 11 chr1 177476700 177476788 -65187565 - L2 LINE L2 0 3313 3226 651 149 107 8 chr1 177477497 177477618 -65186735 - FLAM_C SINE Alu 0 133 1 230 351 108 9 chr1 177477742 177477853 -65186500 - MIR SINE MIR -68 140 19 237 242 30 15 chr1 177479489 177479555 -65184798 - MIR SINE MIR -84 124 58 399 258 0 67 chr1 177479721 177479841 -65184512 + MIR SINE MIR 147 258 -4 327 317 70 60 chr1 177480120 177480319 -65184034 - L2 LINE L2 0 3272 3072 237 354 0 0 chr1 177480950 177481015 -65183338 - L2 LINE L2 0 3313 3249 296 308 194 14 chr1 177481418 177481846 -65182507 + L2 LINE L2 1852 2356 -958 251 320 44 91 chr1 177482043 177482474 -65181879 + L2 LINE L2 2903 3313 0 649 300 48 18 chr1 177483619 177483846 -65180507 - MIR SINE MIR -16 246 13 2342 180 83 37 chr1 177485107 177485707 -65178646 - L1MA9 LINE L1 -25 6287 5660 313 318 15 15 chr1 177486142 177486274 -65178079 - MIR SINE MIR -50 212 81 1376 205 15 82 chr1 177486333 177486724 -65177629 + MLT1A1 LTR MaLR 1 365 0 1492 170 12 102 chr1 177487104 177487427 -65176926 + AluJo SINE Alu 1 294 -18 438 125 0 0 chr1 177487504 177487584 -65176769 + (TC)n Simple_repeat Simple_repeat 2 81 0 391 351 83 33 chr1 177487865 177488440 -65175913 + L2 LINE L2 2046 2649 -665 259 233 0 78 chr1 177488516 177488606 -65175747 + L2 LINE L2 3231 3313 0 212 339 0 0 chr1 177488643 177488705 -65175648 - L3 LINE CR1 -1 1576 1515 289 343 90 67 chr1 177488826 177489126 -65175227 + L2 LINE L2 2966 3272 0 1087 200 14 9 chr1 177489600 177489810 -65174543 - MER20 DNA MER1_type -1 218 8 1787 167 0 19 chr1 177491026 177491366 -65172987 - AluSx SINE Alu 0 334 1 972 288 74 29 chr1 177491373 177492497 -65171856 + L1ME LINE L1 249 1492 -4818 23 0 0 0 chr1 177492674 177492697 -65171656 + AT_rich Low_complexity Low_complexity 1 23 0 1227 288 108 32 chr1 177492845 177494236 -65170117 + L1ME LINE L1 4069 5565 -582 1238 134 106 51 chr1 177494246 177494521 -65169832 + MER44D DNA MER2_type 1 560 -49 2649 37 0 0 chr1 177494621 177494918 -65169435 - AluY SINE Alu -14 297 1 214 240 336 0 chr1 177495243 177495368 -65168985 - MIR SINE MIR -68 194 28 685 274 68 11 chr1 177495810 177496073 -65168280 + L2 LINE L2 2556 2833 -481 422 256 50 25 chr1 177496074 177496234 -65168119 - LTR16C LTR ERVL -1 490 327 22 0 0 0 chr1 177496985 177497007 -65167346 + AT_rich Low_complexity Low_complexity 1 22 0 727 258 127 53 chr1 177497537 177497932 -65166421 + L2 LINE L2 2882 3305 -8 483 18 0 0 chr1 177497945 177498001 -65166352 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 2061 163 22 8 chr1 177499451 177499807 -65164546 + MLT1A1 LTR MaLR 5 365 0 205 179 0 0 chr1 177500047 177500086 -65164267 + GA-rich Low_complexity Low_complexity 2 40 0 309 289 168 5 chr1 177502714 177502911 -65161442 - MIR SINE MIR -13 249 21 252 210 70 70 chr1 177503345 177503445 -65160908 + L2 LINE L2 3199 3298 -15 222 303 0 0 chr1 177504938 177505004 -65159349 + L2 LINE L2 2722 2787 -527 2291 98 16 3 chr1 177505114 177505420 -65158933 - AluSq SINE Alu -1 312 3 282 328 52 76 chr1 177505738 177506356 -65157997 + L2 LINE L2 2361 2974 -298 351 44 0 0 chr1 177506356 177506401 -65157952 + (CA)n Simple_repeat Simple_repeat 2 46 0 282 328 52 76 chr1 177506401 177506486 -65157867 + L2 LINE L2 2974 3060 -212 2178 138 128 13 chr1 177506512 177506896 -65157457 + MSTA LTR MaLR 1 428 0 574 323 39 10 chr1 177508348 177508590 -65155763 + MIR SINE MIR 9 256 -6 1750 213 116 61 chr1 177508656 177509249 -65155104 + MLT1E2 LTR MaLR 1 626 0 1766 167 10 23 chr1 177509278 177509583 -65154770 - AluJo SINE Alu -11 301 1 278 267 144 20 chr1 177513036 177513182 -65151171 + MIR SINE MIR 20 183 -79 257 336 19 19 chr1 177513657 177513761 -65150592 - MIR SINE MIR -113 149 46 2040 111 3 17 chr1 177515409 177515698 -65148655 + AluSc SINE Alu 1 285 -24 1711 141 12 77 chr1 177515838 177516165 -65148188 - AluJb SINE Alu -6 306 1 21 36 0 0 chr1 177517495 177517523 -65146830 + AT_rich Low_complexity Low_complexity 1 28 0 643 287 109 31 chr1 177517808 177518240 -65146113 - L1ME3A LINE L1 -287 5883 5416 1865 292 69 10 chr1 177518793 177519566 -65144787 - L2 LINE L2 -888 2426 1609 6054 134 25 14 chr1 177519841 177520918 -65143435 - L1MA7 LINE L1 -6 6285 5193 313 153 17 0 chr1 177521144 177521203 -65143150 - L2 LINE L2 0 3313 3254 197 275 101 9 chr1 177521246 177521306 -65143047 - L2 LINE L2 -248 3065 3012 189 0 0 0 chr1 177521306 177521327 -65143026 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 197 275 101 9 chr1 177521327 177521375 -65142978 - L2 LINE L2 -301 3012 2947 238 182 0 0 chr1 177521495 177521539 -65142814 + L1ME4a LINE L1 5625 5668 -453 215 292 0 31 chr1 177521558 177521623 -65142730 + L2 LINE L2 2653 2715 -599 364 106 0 0 chr1 177521630 177521677 -65142676 + MER63A DNA MER1_type 1 47 -163 298 204 0 0 chr1 177521712 177521766 -65142587 + Tigger5 DNA MER2_type 2 55 -2268 * 368 224 28 28 chr1 177521752 177521859 -65142494 + Tigger5 DNA MER2_type 2217 2323 0 426 208 10 40 chr1 177521878 177521979 -65142374 + MER63A DNA MER1_type 113 210 0 303 294 194 46 chr1 177522070 177522482 -65141871 + L2 LINE L2 2829 3301 -12 252 151 27 68 chr1 177522498 177522571 -65141782 + L1ME4a LINE L1 5712 5781 -340 618 221 35 0 chr1 177522573 177522718 -65141635 - MIR SINE MIR -23 239 90 827 254 46 23 chr1 177523031 177523338 -65141015 + L1ME4a LINE L1 5808 6121 0 494 251 11 102 chr1 177523694 177523742 -65140611 - MIR3 SINE MIR -9 199 148 1204 213 77 3 chr1 177523742 177524042 -65140311 + MER33 DNA MER1_type 3 324 0 494 251 11 102 chr1 177524042 177524180 -65140173 - MIR3 SINE MIR -60 148 30 258 48 0 0 chr1 177524388 177524430 -65139923 - L1PA2 LINE L1 0 6155 6114 21 0 0 0 chr1 177524460 177524481 -65139872 + AT_rich Low_complexity Low_complexity 1 21 0 258 296 80 0 chr1 177525907 177525995 -65138358 - MIR SINE MIR -125 137 43 371 256 83 83 chr1 177526055 177526211 -65138142 + MER61E LTR ERV1 1 156 -413 * 540 181 24 39 chr1 177526178 177526305 -65138048 + LTR25 LTR ERV1 232 356 -438 271 260 0 90 chr1 177526308 177526408 -65137945 + MER61E LTR ERV1 99 189 -380 * 288 163 0 20 chr1 177526385 177526434 -65137919 + MER61E LTR ERV1 117 164 -405 1488 104 61 0 chr1 177526456 177526668 -65137685 + MER61E LTR ERV1 341 565 -4 254 225 8 150 chr1 177526949 177527069 -65137284 + MER5B DNA MER1_type 31 133 -45 202 125 0 0 chr1 177527572 177527612 -65136741 - MIR SINE MIR -88 120 81 2310 123 0 0 chr1 177527643 177527943 -65136410 - AluSx SINE Alu -12 300 1 412 262 103 51 chr1 177528722 177529017 -65135336 + L1ME4a LINE L1 5624 5919 -202 180 111 0 0 chr1 177529035 177529062 -65135291 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 356 309 48 0 chr1 177529158 177529326 -65135027 + G-rich Low_complexity Low_complexity 4 179 0 352 242 0 65 chr1 177529353 177529539 -65134814 + (GGATG)n Simple_repeat Simple_repeat 4 177 0 281 188 29 65 chr1 177529543 177529681 -65134672 + (AGGTG)n Simple_repeat Simple_repeat 4 136 0 309 255 0 53 chr1 177529748 177529936 -65134417 + (GGATG)n Simple_repeat Simple_repeat 3 180 0 318 238 0 55 chr1 177530082 177530246 -65134107 + (GGATG)n Simple_repeat Simple_repeat 2 156 0 241 248 0 57 chr1 177530354 177530511 -65133842 + (GGATG)n Simple_repeat Simple_repeat 4 151 0 21 0 0 0 chr1 177532945 177532966 -65131387 + AT_rich Low_complexity Low_complexity 1 21 0 238 254 16 0 chr1 177533426 177533489 -65130864 + MIR3 SINE MIR 99 162 -46 359 287 81 15 chr1 177534117 177534253 -65130100 - MIR SINE MIR -36 226 82 1159 303 241 4 chr1 177534506 177535474 -65128879 - L2 LINE L2 -4 3309 2109 227 308 162 0 chr1 177535509 177535626 -65128727 - MIR SINE MIR -75 187 52 195 388 12 0 chr1 177535621 177535686 -65128667 - L2 LINE L2 -14 3258 3193 375 307 102 8 chr1 177535686 177535813 -65128540 + MIR3 SINE MIR 4 142 -66 204 40 0 0 chr1 177535815 177535840 -65128513 + (TTG)n Simple_repeat Simple_repeat 2 26 0 546 287 107 0 chr1 177535841 177535991 -65128362 - L2 LINE L2 -5 3267 3102 188 186 186 57 chr1 177536151 177536221 -65128132 + MIR SINE MIR 183 261 -1 296 280 32 21 chr1 177536264 177536357 -65127996 + MIR SINE MIR 119 212 -50 1092 278 121 38 chr1 177537145 177537591 -65126762 - L2 LINE L2 -2 3311 2829 481 250 59 59 chr1 177537835 177537987 -65126366 + MIR SINE MIR 84 235 -27 3171 227 146 141 chr1 177538006 177538567 -65125786 - L2 LINE L2 -711 2603 2046 660 186 25 0 chr1 177538567 177538685 -65125668 + FLAM_A SINE Alu 19 139 -3 3171 227 146 141 chr1 177538685 177540363 -65123990 - L2 LINE L2 -1268 2046 237 501 241 22 22 chr1 177540816 177540953 -65123400 + LTR45 LTR ERV1 389 525 0 798 290 73 9 chr1 177541097 177541414 -65122939 + L2 LINE L2 1799 2135 -1179 306 276 23 11 chr1 177541827 177541914 -65122439 - MIR SINE MIR -98 110 23 793 219 47 90 chr1 177541979 177542212 -65122141 + MIR SINE MIR 10 232 -30 224 242 11 63 chr1 177543714 177543809 -65120544 + GA-rich Low_complexity Low_complexity 3 92 0 239 253 92 0 chr1 177543827 177543914 -65120439 + L2 LINE L2 3210 3304 -9 241 259 82 12 chr1 177543957 177544042 -65120311 - L2 LINE L2 -70 3243 3153 1664 161 28 0 chr1 177544267 177544553 -65119800 - AluJb SINE Alu -18 294 1 405 288 95 89 chr1 177544738 177544933 -65119420 - L2 LINE L2 -8 3264 3065 2225 107 0 0 chr1 177544933 177545231 -65119122 + AluSx SINE Alu 1 298 -14 405 288 95 89 chr1 177545231 177545361 -65118992 - L2 LINE L2 -207 3065 2937 210 241 0 69 chr1 177545832 177545890 -65118463 - L2 LINE L2 -6 3307 3254 458 313 61 14 chr1 177546007 177546154 -65118199 - MIR3 SINE MIR -39 169 16 214 345 48 0 chr1 177547267 177547351 -65117002 + L2 LINE L2 3199 3286 -27 718 235 41 6 chr1 177547351 177547521 -65116832 + MLT1I LTR MaLR 1 176 -233 413 197 53 0 chr1 177547540 177547616 -65116737 - MER58B DNA MER1_type 0 341 262 * 894 172 13 7 chr1 177547611 177547762 -65116591 - MER58B DNA MER1_type -21 320 169 475 294 16 8 chr1 177549237 177549363 -65114990 - MER5A DNA MER1_type -6 183 57 465 335 56 12 chr1 177549803 177549964 -65114389 + MIR SINE MIR 20 187 -75 372 246 109 125 chr1 177550020 177550181 -65114172 + MIR SINE MIR 11 168 -94 1780 124 0 8 chr1 177550181 177550448 -65113905 + AluSg1 SINE Alu 35 299 -10 372 246 109 125 chr1 177550448 177550542 -65113811 + MIR SINE MIR 168 262 0 598 212 31 98 chr1 177550544 177550741 -65113612 - MLT1J2 LTR MaLR -2 444 258 989 197 5 11 chr1 177550743 177550931 -65113422 - MER58A DNA MER1_type -1 223 37 640 230 69 66 chr1 177550950 177551174 -65113179 - MLT1J2 LTR MaLR -191 259 37 201 289 0 0 chr1 177551174 177551226 -65113127 + GA-rich Low_complexity Low_complexity 2 53 0 231 118 0 0 chr1 177552224 177552258 -65112095 - HAL1 LINE L1 -1052 1455 1422 474 272 94 73 chr1 177552671 177553124 -65111229 + MLT1L LTR MaLR 98 572 -16 439 281 40 88 chr1 177553523 177553797 -65110556 - MIR SINE MIR 0 262 2 374 247 143 3 chr1 177553856 177553996 -65110357 - MIR SINE MIR -59 149 18 212 313 30 30 chr1 177555334 177555401 -65108952 - L2 LINE L2 0 3272 3206 795 218 199 34 chr1 177555558 177555992 -65108361 - L2 LINE L2 -202 3111 2607 386 243 63 121 chr1 177557164 177557370 -65106983 - L3 LINE CR1 -30 1547 1354 625 231 21 14 chr1 177558293 177558436 -65105917 + MIR SINE MIR 53 196 -66 1919 91 12 0 chr1 177559247 177559501 -65104852 + AluSx SINE Alu 3 259 -53 4493 218 60 83 chr1 177560139 177560466 -65103887 + L2 LINE L2 1581 1914 -1399 1708 213 116 49 chr1 177560466 177560974 -65103379 + MLT1F LTR MaLR 1 542 0 4493 218 60 83 chr1 177560974 177562430 -65101923 + L2 LINE L2 1914 3313 0 260 237 40 26 chr1 177562425 177562501 -65101852 - MIR SINE MIR -67 195 119 * 343 208 421 6 chr1 177562508 177562667 -65101686 - MIR SINE MIR -6 256 32 1869 146 3 3 chr1 177563085 177563387 -65100966 + AluJb SINE Alu 1 302 -10 887 255 69 4 chr1 177563454 177563685 -65100668 - MIR SINE MIR 0 262 17 286 200 46 0 chr1 177564474 177564539 -65099814 - L2 LINE L2 -214 3058 2991 315 0 0 0 chr1 177564862 177564897 -65099456 + (CA)n Simple_repeat Simple_repeat 2 36 0 405 81 0 0 chr1 177564897 177564959 -65099394 + (GA)n Simple_repeat Simple_repeat 1 62 0 802 250 176 35 chr1 177565124 177565528 -65098825 + LTR33A LTR ERVL 63 523 0 707 292 66 41 chr1 177565528 177565922 -65098431 - L2 LINE L2 -559 2755 2352 290 26 26 0 chr1 177566501 177566540 -65097813 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2997 221 32 14 chr1 177567316 177567860 -65096493 - MER82 DNA MER2_type 0 653 95 2212 122 20 37 chr1 177567860 177567938 -65096415 + MER7A DNA MER2_type 1 79 -2959 2141 101 3 10 chr1 177567938 177568236 -65096117 - AluSp SINE Alu -17 296 1 2212 122 20 37 chr1 177568236 177568511 -65095842 + MER7A DNA MER2_type 79 346 0 2997 221 32 14 chr1 177568511 177568599 -65095754 - MER82 DNA MER2_type -558 95 10 430 359 77 20 chr1 177568773 177569021 -65095332 + L3 LINE CR1 1192 1453 -124 745 186 119 42 chr1 177570123 177570316 -65094037 - MER3 DNA MER1_type -1 208 1 342 209 0 35 chr1 177570686 177570772 -65093581 + L2 LINE L2 3231 3313 0 569 212 0 27 chr1 177570944 177571128 -65093225 + GA-rich Low_complexity Low_complexity 2 180 0 1153 36 7 0 chr1 177571944 177572082 -65092271 - L1PA3 LINE L1 -3 6152 6014 300 300 22 0 chr1 177572247 177572337 -65092016 - MIR SINE MIR -66 142 51 242 303 128 0 chr1 177572612 177572721 -65091632 - MLT1J2 LTR MaLR -46 404 282 725 250 88 0 chr1 177572726 177572918 -65091435 - MER3 DNA MER1_type 0 209 1 1152 224 38 0 chr1 177572920 177573157 -65091196 - MLT1J2 LTR MaLR -204 246 1 492 305 180 5 chr1 177574338 177574750 -65089603 + L2 LINE L2 2564 3073 -240 2537 238 13 42 chr1 177575243 177575662 -65088691 - L1ME1 LINE L1 -92 6143 5754 2085 98 14 10 chr1 177575662 177575958 -65088395 - AluSq SINE Alu -16 297 1 2537 238 13 42 chr1 177575958 177576300 -65088053 - L1ME1 LINE L1 -481 5754 5404 385 185 0 92 chr1 177576274 177576393 -65087960 - L1ME1 LINE L1 -2382 3833 3726 * 683 199 26 16 chr1 177576373 177576564 -65087789 - L1ME1 LINE L1 -2953 3262 3070 410 172 50 10 chr1 177576562 177576661 -65087692 - L1ME1 LINE L1 -4023 2373 2271 * 460 197 38 30 chr1 177576669 177576801 -65087552 - L1ME1 LINE L1 -4221 2175 2043 239 111 42 14 chr1 177576806 177576878 -65087475 + (TA)n Simple_repeat Simple_repeat 2 75 0 861 251 60 63 chr1 177576883 177577035 -65087318 - L1ME1 LINE L1 -4805 1591 1440 1805 201 37 3 chr1 177577035 177577388 -65086965 + MLT1A1 LTR MaLR 1 365 0 861 251 60 63 chr1 177577388 177577698 -65086655 - L1ME1 LINE L1 -4956 1440 1130 3605 246 34 7 chr1 177577720 177578649 -65085704 - L1ME1 LINE L1 -5415 981 27 922 263 19 27 chr1 177578943 177579202 -65085151 + MIR SINE MIR 6 262 0 247 327 13 60 chr1 177579216 177579366 -65084987 + L2 LINE L2 2630 2772 -542 208 241 19 19 chr1 177579742 177579796 -65084557 + L2 LINE L2 3219 3272 0 682 313 127 22 chr1 177581156 177581558 -65082795 - L2 LINE L2 0 3272 2829 341 233 8 100 chr1 177581638 177581758 -65082595 - MLT1G LTR MaLR -462 128 20 25 65 0 0 chr1 177581922 177581968 -65082385 + AT_rich Low_complexity Low_complexity 1 46 0 27362 38 2 0 chr1 177581968 177588098 -65076255 - L1PA4 LINE L1 -3 6152 3 642 96 0 0 chr1 177588176 177588259 -65076094 + AluS SINE Alu 2 84 -228 431 233 58 0 chr1 177588581 177588684 -65075669 - MIR SINE MIR -80 182 74 389 278 63 79 chr1 177588703 177588921 -65075432 - MIR SINE MIR -1 207 45 2896 164 58 27 chr1 177589913 177590497 -65073856 - L1MB7 LINE L1 -19 6165 5564 379 322 132 41 chr1 177591086 177591551 -65072802 + L2 LINE L2 2758 3270 -2 285 250 52 21 chr1 177591547 177591643 -65072710 - MIR3 SINE MIR -45 163 65 * 181 250 155 12 chr1 177593223 177593307 -65071046 + MIR SINE MIR 61 156 -106 198 0 0 0 chr1 177594305 177594327 -65070026 + (CA)n Simple_repeat Simple_repeat 2 23 0 447 240 27 127 chr1 177594983 177595034 -65069319 - MIR SINE MIR -19 243 189 1921 135 0 0 chr1 177595034 177595348 -65069005 - AluSx SINE Alu 0 314 1 447 240 27 127 chr1 177595348 177595516 -65068837 - MIR SINE MIR -73 189 45 498 291 67 73 chr1 177596157 177596500 -65067853 + L2 LINE L2 2972 3312 -1 461 326 45 0 chr1 177596906 177597038 -65067315 - L2 LINE L2 -1 3271 3134 22 99 0 0 chr1 177597038 177597109 -65067244 + AT_rich Low_complexity Low_complexity 1 71 0 624 241 0 97 chr1 177597314 177597530 -65066823 + MIR SINE MIR 68 262 0 350 102 17 34 chr1 177597628 177597687 -65066666 - MLT1A1 LTR MaLR -307 58 1 1556 177 14 27 chr1 177598266 177598560 -65065793 + AluJo SINE Alu 1 290 -22 10710 188 11 49 chr1 177598627 177599209 -65065144 + L1P LINE L1 2745 3347 -2799 2358 50 40 0 chr1 177599209 177599508 -65064845 + AluYa5 SINE Alu 1 311 0 10710 188 11 49 chr1 177599508 177600204 -65064149 + L1P LINE L1 3347 4068 -2078 180 0 0 0 chr1 177600204 177600224 -65064129 + (TA)n Simple_repeat Simple_repeat 2 21 0 10710 188 11 49 chr1 177600224 177601462 -65062891 + L1P LINE L1 4068 5167 -979 1306 182 11 48 chr1 177601462 177601731 -65062622 + AluJo SINE Alu 1 259 -53 5738 126 26 2 chr1 177601731 177602756 -65061597 + L1PA16 LINE L1 5110 6166 0 1506 109 0 42 chr1 177603006 177603245 -65061108 + L1PA15 LINE L1 5935 6163 -2 1769 131 4 0 chr1 177604783 177605050 -65059303 - AluSx SINE Alu -8 304 37 378 173 0 0 chr1 177605173 177605225 -65059128 + C-rich Low_complexity Low_complexity 1 52 0 373 295 43 20 chr1 177605385 177605687 -65058666 - AluSx SINE Alu 0 302 1 213 293 91 10 chr1 177606682 177606781 -65057572 + MIR SINE MIR 111 217 -45 298 310 62 41 chr1 177606821 177606966 -65057387 - MIR SINE MIR -63 199 52 1612 178 7 19 chr1 177608156 177608465 -65055888 + AluJo SINE Alu 1 305 -7 898 305 32 49 chr1 177609162 177609572 -65054781 - L2 LINE L2 -4 3309 2907 815 291 40 35 chr1 177609758 177610212 -65054141 + LTR16A1 LTR ERVL 2 457 0 341 312 14 80 chr1 177611039 177611177 -65053176 - MIR SINE MIR -56 206 78 675 310 46 26 chr1 177611654 177611957 -65052396 - L2 LINE L2 -817 2497 2189 246 293 217 9 chr1 177612293 177612399 -65051954 + MIR SINE MIR 48 175 -87 249 0 0 115 chr1 177612880 177612932 -65051421 + (TAAAAA)n Simple_repeat Simple_repeat 3 48 0 695 189 145 0 chr1 177612981 177613140 -65051213 - MER5A DNA MER1_type 0 189 8 624 312 57 24 chr1 177614174 177614472 -65049881 + L2 LINE L2 3005 3312 -1 212 259 19 0 chr1 177614996 177615050 -65049303 + GA-rich Low_complexity Low_complexity 5 59 0 181 319 116 0 chr1 177615160 177615229 -65049124 - MIR SINE MIR -86 122 46 344 258 86 18 chr1 177616651 177616805 -65047548 - MIR3 SINE MIR -40 168 2 2417 151 31 31 chr1 177617293 177617718 -65046635 + MSTB1 LTR MaLR 7 431 -1 881 220 55 32 chr1 177617912 177618130 -65046223 + MIR SINE MIR 35 257 -5 328 248 90 83 chr1 177618823 177618956 -65045397 - MER94 DNA DNA 0 134 1 318 278 105 23 chr1 177619104 177619237 -65045116 - L3b LINE CR1 -142 1441 1298 202 359 0 17 chr1 177620525 177620642 -65043711 + G-rich Low_complexity Low_complexity 4 118 0 188 229 0 21 chr1 177620720 177620768 -65043585 + L2 LINE L2 1405 1451 -1863 22 56 0 0 chr1 177620920 177620956 -65043397 + GC_rich Low_complexity Low_complexity 1 36 0 247 291 0 23 chr1 177621699 177621785 -65042568 + GA-rich Low_complexity Low_complexity 3 86 0 420 20 0 0 chr1 177622571 177622620 -65041733 + (CA)n Simple_repeat Simple_repeat 2 50 0 216 273 36 0 chr1 177623466 177623521 -65040832 + GA-rich Low_complexity Low_complexity 2 58 0 501 296 35 6 chr1 177623696 177623868 -65040485 + MIR3 SINE MIR 32 208 0 237 343 0 14 chr1 177623868 177624014 -65040339 + CT-rich Low_complexity Low_complexity 1 144 0 336 311 33 99 chr1 177624065 177624367 -65039986 + L2 LINE L2 2939 3220 -52 461 17 17 0 chr1 177626097 177626155 -65038198 + (TG)n Simple_repeat Simple_repeat 2 60 0 777 161 8 0 chr1 177626709 177626833 -65037520 - MLT1A1 LTR MaLR 0 365 241 729 146 9 0 chr1 177626835 177626945 -65037408 + MLT1B LTR MaLR 266 376 -14 780 250 71 14 chr1 177627016 177627228 -65037125 + MIR SINE MIR 29 252 -10 1914 129 0 3 chr1 177628186 177628473 -65035880 + AluSg SINE Alu 12 297 -13 3475 133 15 23 chr1 177629459 177630059 -65034294 - L1MB3 LINE L1 -15 6168 5574 505 253 25 31 chr1 177630166 177630328 -65034025 + MLT1H LTR MaLR 8 168 -381 309 114 41 0 chr1 177630495 177630567 -65033786 + MLT1H LTR MaLR 287 523 -26 347 154 77 33 chr1 177631329 177631420 -65032933 + L1MA8 LINE L1 6195 6289 -2 26 0 0 0 chr1 177631505 177631531 -65032822 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr1 177631567 177631604 -65032749 + AT_rich Low_complexity Low_complexity 1 37 0 505 311 0 0 chr1 177631648 177631767 -65032586 + MIR3 SINE MIR 43 161 -47 2095 123 40 9 chr1 177633329 177633679 -65030674 + MER46B DNA MER2_type 1 236 0 2241 256 43 45 chr1 177633691 177634527 -65029826 + L1MC/D LINE L1 6 839 -5231 519 257 20 7 chr1 177634519 177634671 -65029682 + L1M4 LINE L1 4216 4369 -1777 * 454 317 79 7 chr1 177635072 177635362 -65028991 + L1MC/D LINE L1 3944 4254 -1826 539 295 110 40 chr1 177635384 177635643 -65028710 + L1MC/D LINE L1 4303 4542 -1538 2054 114 13 23 chr1 177635643 177635942 -65028411 + AluSq SINE Alu 1 296 -17 539 295 110 40 chr1 177635942 177636232 -65028121 + L1MC/D LINE L1 4542 4810 -1270 1134 43 0 14 chr1 177636232 177636372 -65027981 + MER85 DNA T2_type 2 139 0 539 295 110 40 chr1 177636372 177636674 -65027679 + L1MC/D LINE L1 4810 5220 -860 982 207 138 12 chr1 177636685 177636971 -65027382 + L1MC/D LINE L1 5208 5531 -696 2028 215 66 73 chr1 177636974 177637728 -65026625 + L1MC5 LINE L1 6824 7572 -389 766 197 60 32 chr1 177637740 177637958 -65026395 + L1MC5 LINE L1 7698 7921 -40 574 212 0 9 chr1 177638251 177638364 -65025989 + FRAM SINE Alu 35 146 -30 283 32 48 32 chr1 177638615 177638678 -65025675 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 2204 122 0 0 chr1 177638680 177638968 -65025385 - AluSx SINE Alu -24 288 1 21 0 0 0 chr1 177640931 177640952 -65023401 + AT_rich Low_complexity Low_complexity 1 21 0 573 15 0 0 chr1 177642589 177642655 -65021698 + (TG)n Simple_repeat Simple_repeat 1 66 0 700 290 81 87 chr1 177642670 177643336 -65021017 - L1MEd LINE L1 -5451 668 7 360 0 0 0 chr1 177643510 177643550 -65020803 + (CA)n Simple_repeat Simple_repeat 1 40 0 2095 233 92 43 chr1 177643550 177644113 -65020240 + MLT1G1 LTR MaLR 2 592 -3 21 0 0 0 chr1 177644384 177644405 -65019948 + AT_rich Low_complexity Low_complexity 1 21 0 326 310 91 53 chr1 177644445 177644632 -65019721 - L3 LINE CR1 -214 1363 1170 298 341 68 0 chr1 177645224 177645356 -65018997 - MIR3 SINE MIR -7 201 61 435 184 0 0 chr1 177646185 177646272 -65018081 + (TA)n Simple_repeat Simple_repeat 1 87 0 225 152 0 0 chr1 177646274 177646320 -65018033 - LTR66 LTR ERVL -171 439 394 202 244 111 59 chr1 177647229 177647364 -65016989 - L2 LINE L2 -3 3310 3169 687 310 136 46 chr1 177648006 177648567 -65015786 - L3 LINE CR1 -51 1526 916 1003 218 47 88 chr1 177650261 177650691 -65013662 + MLT1A2 LTR MaLR 2 394 -2 1875 301 53 50 chr1 177650780 177652218 -65012135 + L1MEc LINE L1 246 1687 -4920 7257 133 5 7 chr1 177652252 177653692 -65010661 - L1MA1 LINE L1 0 6302 4869 278 207 14 0 chr1 177653691 177653763 -65010590 + L1MEc LINE L1 1516 1777 -4830 * 1590 112 26 4 chr1 177653794 177654061 -65010292 - L1MA8 LINE L1 0 6291 6019 1085 255 46 34 chr1 177654074 177654489 -65009864 + L1MEc LINE L1 1733 2152 -4455 966 224 5 0 chr1 177654516 177654708 -65009645 + AluJo SINE Alu 120 312 0 2682 208 131 30 chr1 177654709 177654839 -65009514 + L1MEc LINE L1 2151 2266 -4160 189 0 0 0 chr1 177654839 177654860 -65009493 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 222 37 0 0 chr1 177654859 177654886 -65009467 + (CA)n Simple_repeat Simple_repeat 1 27 0 2682 208 131 30 chr1 177654860 177655980 -65008373 + L1MEc LINE L1 2266 3483 -2943 * 3254 215 19 21 chr1 177655977 177656797 -65007556 + L1M4 LINE L1 4385 5203 -943 1781 209 88 31 chr1 177657518 177657996 -65006357 + MLT1D LTR MaLR 1 505 0 658 251 116 54 chr1 177658278 177658648 -65005705 + L2 LINE L2 2921 3313 0 240 170 0 57 chr1 177658995 177659048 -65005305 + GA-rich Low_complexity Low_complexity 3 52 0 299 273 57 0 chr1 177659539 177659627 -65004726 - MIR SINE MIR -78 130 38 228 243 69 62 chr1 177660458 177660602 -65003751 + MIR3 SINE MIR 2 146 -62 320 319 148 31 chr1 177663032 177663289 -65001064 - L2 LINE L2 -78 3235 2949 402 254 36 14 chr1 177663659 177663797 -65000556 + MIR3 SINE MIR 45 185 -23 188 272 55 145 chr1 177665214 177665504 -64998849 - L2 LINE L2 -43 3229 2966 522 238 23 55 chr1 177665765 177665804 -64998549 + L2 LINE L2 2293 2332 -982 2091 199 39 5 chr1 177665804 177666216 -64998137 - MSTB LTR MaLR 0 426 1 522 238 23 55 chr1 177666216 177666432 -64997921 + L2 LINE L2 2332 2540 -774 341 227 171 57 chr1 177666547 177666723 -64997630 - L1ME3A LINE L1 -4 6166 5971 832 202 128 49 chr1 177666840 177667083 -64997270 - L1ME3A LINE L1 -235 5935 5674 812 293 148 7 chr1 177667083 177667631 -64996722 + L2 LINE L2 2686 3313 0 279 320 57 52 chr1 177668369 177668563 -64995790 + MIR SINE MIR 18 212 -50 304 301 32 45 chr1 177668792 177668948 -64995405 + L1MB3 LINE L1 4402 4555 -1591 773 264 85 33 chr1 177668956 177670030 -64994323 + L1MB3 LINE L1 4592 5880 -303 * 5029 175 27 22 chr1 177670029 177671072 -64993281 + L1MA9 LINE L1 4387 5424 -888 2129 133 3 0 chr1 177671072 177671373 -64992980 + AluSx SINE Alu 1 302 -10 5029 175 27 22 chr1 177671373 177672079 -64992274 + L1MA9 LINE L1 5424 6135 -177 1753 46 9 19 chr1 177672079 177672295 -64992058 + AluY SINE Alu 82 295 -16 5029 175 27 22 chr1 177672295 177672408 -64991945 + L1MA9 LINE L1 6135 6246 -66 2000 134 9 0 chr1 177672588 177672908 -64991445 + L1MB3 LINE L1 5861 6183 0 656 267 121 5 chr1 177672941 177673147 -64991206 + MIR SINE MIR 20 249 -13 297 330 64 0 chr1 177673174 177673268 -64991085 - L2 LINE L2 -16 3256 3157 311 299 260 0 chr1 177673406 177673560 -64990793 + L3 LINE CR1 1381 1574 -3 2855 244 111 14 chr1 177674308 177675432 -64988921 - L2 LINE L2 -255 3058 1821 401 146 23 115 chr1 177675432 177675499 -64988854 + L1MC5 LINE L1 7085 7136 -825 2212 120 7 7 chr1 177675499 177675807 -64988546 + AluSx SINE Alu 1 308 -4 401 146 23 115 chr1 177675807 177675869 -64988484 + L1MC5 LINE L1 7136 7202 -759 1180 191 28 0 chr1 177675872 177676087 -64988266 + MER58A DNA MER1_type 1 221 -3 248 241 35 0 chr1 177676650 177676708 -64987645 + Charlie4 DNA MER1_type 1898 1957 -4 3426 74 0 0 chr1 177677059 177677491 -64986862 - L1PA11 LINE L1 -1 6173 5742 1169 156 0 0 chr1 177677491 177677677 -64986676 + L1P LINE L1 4771 4956 -1190 1933 225 53 36 chr1 177677747 177678214 -64986139 + MLT2B2 LTR ERVL 1 479 -36 243 0 0 0 chr1 177678214 177678241 -64986112 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 1933 225 53 36 chr1 177678241 177678279 -64986074 + MLT2B2 LTR ERVL 479 515 0 365 276 71 8 chr1 177678566 177678693 -64985660 - MIR SINE MIR -69 193 59 1135 311 94 34 chr1 177679517 177680530 -64983823 - L2 LINE L2 -4 3309 2230 723 272 74 18 chr1 177680582 177680865 -64983488 + LTR16B LTR ERVL 166 464 0 681 239 151 65 chr1 177680922 177681029 -64983324 + MLT1H LTR MaLR 119 215 -334 2291 148 20 0 chr1 177681029 177681387 -64982966 + MLT1A1 LTR MaLR 1 365 0 681 239 151 65 chr1 177681387 177681676 -64982677 + MLT1H LTR MaLR 215 549 0 190 129 0 0 chr1 177681686 177681717 -64982636 - L2 LINE L2 -1090 2224 2194 214 301 43 43 chr1 177681811 177681904 -64982449 - L2 LINE L2 -16 3256 3164 1546 135 4 0 chr1 177682414 177682651 -64981702 + AluSq SINE Alu 69 306 -7 313 256 158 49 chr1 177682867 177683113 -64981240 + L1MC4a LINE L1 5681 5953 -1855 * 3189 221 70 12 chr1 177683104 177684055 -64980298 + L1ME1 LINE L1 5175 6333 -1 3102 217 14 30 chr1 177684436 177685094 -64979259 + MER82 DNA MER2_type 1 647 -6 1065 273 19 29 chr1 177685623 177685931 -64978422 + L1ME LINE L1 5483 5787 -334 1614 151 63 32 chr1 177686764 177686778 -64977575 - AluJo SINE Alu 0 312 300 217 0 0 0 chr1 177686778 177686802 -64977551 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1614 151 63 32 chr1 177686802 177687071 -64977282 - AluJo SINE Alu -12 300 3 30193 84 5 10 chr1 177687277 177691527 -64972826 + L1P LINE L1 1173 5403 -743 4935 63 7 0 chr1 177691540 177692157 -64972196 + L1PA7 LINE L1 5534 6154 0 290 247 12 37 chr1 177692157 177692229 -64972124 - MER5B DNA MER1_type -31 147 76 506 234 18 48 chr1 177692425 177692592 -64971761 + MER103 DNA DNA 3 164 -2 1663 219 200 19 chr1 177692841 177693317 -64971036 + MLT1G LTR MaLR 29 590 0 287 239 28 0 chr1 177693461 177693532 -64970821 - MIR SINE MIR -2 260 188 697 236 40 0 chr1 177693600 177693767 -64970586 + MIR SINE MIR 87 259 -3 295 253 81 0 chr1 177693863 177693950 -64970403 + L2 LINE L2 3172 3265 -7 195 162 0 0 chr1 177694085 177694122 -64970231 + (TCCTG)n Simple_repeat Simple_repeat 3 39 0 365 282 55 9 chr1 177694349 177694459 -64969894 - MIR SINE MIR -116 146 32 405 39 0 0 chr1 177694683 177694734 -64969619 + (CA)n Simple_repeat Simple_repeat 2 52 0 221 200 50 33 chr1 177695476 177695536 -64968817 + MIR SINE MIR 32 92 -116 1267 177 13 4 chr1 177695717 177695943 -64968410 + L1MA9 LINE L1 5854 6081 -231 487 173 67 0 chr1 177695945 177696049 -64968304 + L1MA9 LINE L1 6180 6290 -22 35 24 0 0 chr1 177696052 177696094 -64968259 + AT_rich Low_complexity Low_complexity 1 42 0 406 189 89 0 chr1 177696351 177696441 -64967912 + MIR SINE MIR 79 176 -86 585 311 152 50 chr1 177696447 177696892 -64967461 + L2 LINE L2 2183 2581 -691 1655 157 10 32 chr1 177696892 177697271 -64967082 - AluJo SINE Alu 0 312 1 585 311 152 50 chr1 177697271 177697816 -64966537 + L2 LINE L2 2581 3272 0 1544 172 63 66 chr1 177697938 177698334 -64966019 + MLT2C1 LTR ERVL 3 397 0 424 306 49 14 chr1 177699667 177699811 -64964542 + MIR3 SINE MIR 19 167 -41 407 203 7 34 chr1 177699900 177700048 -64964305 + CT-rich Low_complexity Low_complexity 2 145 0 2053 270 115 39 chr1 177700586 177701504 -64962849 + L2 LINE L2 1950 2932 -340 701 140 19 0 chr1 177701556 177701663 -64962690 - AluSx SINE Alu -15 294 186 1263 135 0 39 chr1 177701694 177701901 -64962452 - AluSx SINE Alu -112 200 2 976 271 142 26 chr1 177701986 177702444 -64961909 - LTR33 LTR ERVL -10 511 1 781 276 65 18 chr1 177702474 177702691 -64961662 + MLT1I LTR MaLR 183 409 0 535 232 107 12 chr1 177702703 177702871 -64961482 + L2 LINE L2 3102 3285 -28 4484 60 37 8 chr1 177702882 177703887 -64960466 - MER11A LTR ERVK 0 1266 1 34804 74 4 8 chr1 177703888 177708312 -64956041 - HERVK11 LTR ERVK -1 7952 3546 7807 86 3 0 chr1 177708312 177709311 -64955042 - HERVK11 LTR ERVK -4535 3418 2417 * 12658 94 2 20 chr1 177709310 177711032 -64953321 - HERVK11 LTR ERVK -6261 1692 1 5489 112 110 34 chr1 177711032 177712119 -64952234 - MER11A LTR ERVK 0 1266 1 335 359 51 0 chr1 177712189 177712306 -64952047 - MIR SINE MIR -136 126 4 202 286 29 43 chr1 177712774 177712844 -64951509 + L2 LINE L2 3150 3218 -54 861 269 111 15 chr1 177713147 177713471 -64950882 + MLT1J LTR MaLR 7 361 -150 857 243 27 0 chr1 177713488 177713710 -64950643 + MER63 DNA MER1_type 787 1014 -48 379 208 9 9 chr1 177714310 177714416 -64949937 + GA-rich Low_complexity Low_complexity 3 108 0 22 0 0 0 chr1 177714438 177714460 -64949893 + AT_rich Low_complexity Low_complexity 1 22 0 821 172 7 0 chr1 177714498 177714643 -64949710 + AluJb SINE Alu 137 282 -30 294 95 0 0 chr1 177714760 177714802 -64949551 + (TG)n Simple_repeat Simple_repeat 2 43 0 7044 45 7 1 chr1 177714823 177715683 -64948670 + L1PA5 LINE L1 5289 6153 -1 227 379 57 0 chr1 177715885 177716009 -64948344 + L2 LINE L2 3104 3234 -38 * 271 374 58 43 chr1 177716008 177716147 -64948206 - L2 LINE L2 -16 3256 3116 224 324 198 16 chr1 177716259 177716441 -64947912 + MIR SINE MIR 40 254 -8 1324 114 0 5 chr1 177716625 177716831 -64947522 + AluSg/x SINE Alu 103 307 0 266 280 101 65 chr1 177716842 177717010 -64947343 - MIR3 SINE MIR -1 207 34 239 322 20 0 chr1 177717069 177717218 -64947135 + L2 LINE L2 1955 2106 -1208 545 280 63 6 chr1 177717373 177717548 -64946805 - MIR SINE MIR -25 237 53 1583 99 0 0 chr1 177717731 177717943 -64946410 + AluSq SINE Alu 86 297 -16 2124 78 13 19 chr1 177718148 177718455 -64945898 + L1PA13 LINE L1 5851 6155 -8 300 346 81 11 chr1 177719320 177719505 -64944848 - MIR SINE MIR -49 213 16 922 304 94 17 chr1 177719757 177720237 -64944116 + LTR33 LTR ERVL 3 519 -2 747 265 180 25 chr1 177720739 177721177 -64943176 + LTR33A LTR ERVL 3 508 -15 283 278 67 0 chr1 177721180 177721270 -64943083 - MIR3 SINE MIR -103 105 10 1029 170 12 0 chr1 177722552 177722723 -64941630 - FAM SINE Alu -2 173 1 184 342 40 0 chr1 177722726 177722802 -64941551 - MER5B DNA MER1_type -36 142 64 423 248 19 81 chr1 177723048 177723209 -64941144 - MIR SINE MIR -10 252 102 384 264 182 0 chr1 177723194 177723342 -64941011 - L2 LINE L2 -300 3013 2839 * 902 282 72 14 chr1 177723342 177723633 -64940720 - HERV16 LTR ERVL -3029 1967 1660 5707 153 34 12 chr1 177723665 177725126 -64939227 - L1MA6 LINE L1 0 6300 4805 490 325 64 22 chr1 177725135 177725430 -64938923 - HERV16 LTR ERVL -3317 1679 1361 537 133 0 0 chr1 177725431 177725514 -64938839 - AluS SINE Alu -228 84 2 2187 270 107 40 chr1 177725708 177726145 -64938208 - HERV16 LTR ERVL -3853 1143 736 1887 114 30 0 chr1 177726145 177726439 -64937914 - AluSc SINE Alu 0 302 1 2187 270 107 40 chr1 177726439 177726815 -64937538 - HERV16 LTR ERVL -4260 736 275 2021 208 46 27 chr1 177726824 177727301 -64937052 + MLT1D LTR MaLR 13 498 -7 738 313 61 4 chr1 177727302 177727564 -64936789 - HERV16 LTR ERVL -4710 286 10 713 270 51 36 chr1 177727572 177727946 -64936407 - LTR16A LTR ERVL 0 450 31 692 259 110 56 chr1 177727981 177728409 -64935944 + HAL1 LINE L1 617 1067 -1440 819 150 16 0 chr1 177728411 177728538 -64935815 + FLAM_C SINE Alu 2 130 -13 2278 101 0 0 chr1 177728542 177728838 -64935515 + AluSx SINE Alu 1 296 -16 788 285 91 25 chr1 177728931 177729292 -64935061 + HAL1 LINE L1 1625 2009 -498 522 282 151 45 chr1 177729292 177729696 -64934657 - MLT1J2 LTR MaLR 0 450 4 809 171 24 53 chr1 177729716 177729886 -64934467 - MER69A DNA AcHobo -8 169 5 911 311 43 14 chr1 177729982 177730333 -64934020 - MLT1J LTR MaLR -150 361 1 1203 227 84 27 chr1 177730334 177730809 -64933544 + HAL1 LINE L1 2006 2507 0 2214 108 3 0 chr1 177730850 177731155 -64933198 + AluSg SINE Alu 5 310 0 6952 30 0 0 chr1 177731157 177731981 -64932372 - L1PA2 LINE L1 -774 5372 4549 6950 9 0 0 chr1 177731981 177732744 -64931609 + L1PA2 LINE L1 5392 6155 0 232 337 0 11 chr1 177732861 177732950 -64931403 + MER5A DNA MER1_type 1 88 -101 1683 227 29 50 chr1 177733413 177733929 -64930424 - MLT1D LTR MaLR 0 505 1 520 189 170 20 chr1 177734029 177734182 -64930171 - MER5B DNA MER1_type 0 178 3 267 31 0 0 chr1 177734604 177734636 -64929717 + (CA)n Simple_repeat Simple_repeat 2 33 0 195 129 0 0 chr1 177734664 177734695 -64929658 + (CA)n Simple_repeat Simple_repeat 1 31 0 914 206 140 77 chr1 177735456 177735835 -64928518 - MLT1H LTR MaLR -146 403 1 340 291 48 0 chr1 177736264 177736367 -64927986 + MIR SINE MIR 40 147 -115 837 288 94 36 chr1 177737500 177738109 -64926244 - L2 LINE L2 -2 3311 2666 190 260 0 60 chr1 177738487 177738537 -64925816 - L2 LINE L2 -92 3221 3175 261 207 61 0 chr1 177738880 177738962 -64925391 - MER69 DNA AcHobo -59 2467 2381 2329 105 0 0 chr1 177740745 177741049 -64923304 - AluSp SINE Alu -9 304 1 1831 168 30 0 chr1 177741982 177742279 -64922074 + AluJb SINE Alu 1 306 -6 719 273 61 76 chr1 177742713 177742782 -64921571 - L2 LINE L2 -6 3307 3238 2334 110 7 0 chr1 177742782 177743091 -64921262 + AluSx SINE Alu 1 311 -1 719 273 61 76 chr1 177743091 177743479 -64920874 - L2 LINE L2 -75 3238 2857 2307 129 0 0 chr1 177743537 177743848 -64920505 - AluSx SINE Alu -1 311 1 464 169 0 0 chr1 177744528 177744605 -64919748 + L2 LINE L2 3195 3271 -1 266 219 0 47 chr1 177744639 177744703 -64919650 + L2 LINE L2 3210 3270 -43 364 269 46 19 chr1 177744717 177744825 -64919528 - MIR3 SINE MIR -16 192 82 232 162 0 0 chr1 177745429 177745466 -64918887 + MIR SINE MIR 115 151 -57 252 325 0 24 chr1 177745518 177745601 -64918752 - L2 LINE L2 -43 3270 3190 408 197 0 0 chr1 177745616 177745692 -64918661 - L2 LINE L2 -1 3271 3196 334 273 112 100 chr1 177746639 177746888 -64917465 - L2 LINE L2 -2 3270 3019 1158 155 6 0 chr1 177747191 177747365 -64916988 + FRAM SINE Alu 1 174 -2 1632 199 82 25 chr1 177747428 177747865 -64916488 + MLT1C LTR MaLR 6 467 0 335 302 89 0 chr1 177747866 177748045 -64916308 - MER102b DNA MER1_type -18 323 129 615 231 25 0 chr1 177748048 177748169 -64916184 - AluJo SINE Alu -175 137 14 335 226 117 51 chr1 177748286 177748318 -64916035 - MIR3 SINE MIR -55 153 125 1907 155 38 0 chr1 177748318 177748608 -64915745 + AluJb SINE Alu 1 301 -11 335 226 117 51 chr1 177748608 177748712 -64915641 - MIR3 SINE MIR -83 125 8 285 275 194 19 chr1 177750175 177750335 -64914018 - MER5B DNA MER1_type -1 188 1 386 228 30 20 chr1 177750349 177750450 -64913903 + MER5A DNA MER1_type 7 108 -81 2111 117 30 0 chr1 177752503 177752801 -64911552 + AluSx SINE Alu 1 307 -5 345 239 95 68 chr1 177752815 177753078 -64911275 - L1ME4a LINE L1 -1 6120 5851 1294 277 153 14 chr1 177753239 177753799 -64910554 + L2 LINE L2 2662 3312 -1 192 135 0 0 chr1 177754570 177754607 -64909746 + (CA)n Simple_repeat Simple_repeat 2 38 0 274 311 129 23 chr1 177755235 177755367 -64908986 - MIR SINE MIR -48 214 69 850 258 42 33 chr1 177755607 177755847 -64908506 + MIR SINE MIR 21 262 0 283 203 78 0 chr1 177755827 177755891 -64908462 - MIR SINE MIR -96 166 98 * 2131 102 64 0 chr1 177755913 177756196 -64908157 - AluSx SINE Alu -11 301 1 25634 64 9 6 chr1 177756363 177760659 -64903694 - L1PA6 LINE L1 -5 6149 1844 4646 26 0 0 chr1 177760659 177761189 -64903164 - L1PA3 LINE L1 0 6155 5626 1281 220 46 15 chr1 177761207 177761534 -64902819 - MER46C DNA MER2_type 0 338 2 322 228 38 13 chr1 177761595 177761674 -64902679 - MIR SINE MIR -7 255 175 1898 133 70 7 chr1 177761837 177762123 -64902230 - AluJo SINE Alu -8 304 1 2359 128 19 25 chr1 177762146 177762512 -64901841 - THE1B LTR MaLR 0 364 1 11397 85 14 6 chr1 177762517 177764079 -64900274 - THE1B-int LTR MaLR -6 1574 1 2300 120 22 33 chr1 177764081 177764447 -64899906 - THE1B LTR MaLR -2 362 1 239 255 0 0 chr1 177765029 177765080 -64899273 + L2 LINE L2 3226 3276 -37 756 99 0 0 chr1 177765195 177765306 -64899047 + AluSg/x SINE Alu 200 310 0 599 294 29 0 chr1 177766423 177766559 -64897794 - L2 LINE L2 -17 3255 3116 447 240 56 16 chr1 177766616 177766741 -64897612 - MIR SINE MIR -65 197 68 318 299 90 14 chr1 177766745 177766889 -64897464 - MER63A DNA MER1_type 0 210 56 349 213 148 33 chr1 177767277 177767399 -64896954 + L2 LINE L2 3137 3272 0 485 193 373 0 chr1 177767502 177767652 -64896701 + MIR SINE MIR 36 241 -21 268 237 150 45 chr1 177768498 177768626 -64895727 + MIR SINE MIR 41 181 -27 2242 91 3 0 chr1 177769525 177769854 -64894499 - AluSc SINE Alu 0 309 1 182 328 33 0 chr1 177770337 177770398 -64893955 - L2 LINE L2 -4 3309 3247 6538 47 7 3 chr1 177771053 177772024 -64892329 + L1PA7 LINE L1 5124 6097 -57 560 186 21 0 chr1 177772024 177772121 -64892232 + FRAM SINE Alu 67 165 -11 365 263 94 25 chr1 177772147 177772307 -64892046 - L2 LINE L2 -559 2755 2585 302 293 53 38 chr1 177772593 177772726 -64891627 + L2 LINE L2 2962 3096 -176 264 186 102 0 chr1 177772844 177772903 -64891450 - L2 LINE L2 -3 3310 3246 217 299 39 0 chr1 177772975 177773052 -64891301 + L2 LINE L2 3188 3267 -5 546 88 0 0 chr1 177773639 177773707 -64890646 - AluSc SINE Alu -74 235 168 336 228 109 10 chr1 177774072 177774173 -64890180 + L2 LINE L2 3191 3301 -12 2262 116 0 0 chr1 177774219 177774511 -64889842 + AluSq SINE Alu 1 292 -21 741 248 64 15 chr1 177774993 177775195 -64889158 + MIR SINE MIR 10 221 -41 743 274 98 7 chr1 177775457 177775764 -64888589 - MLT1J2 LTR MaLR -1 449 115 4067 139 11 42 chr1 177775777 177776511 -64887842 - MER50 LTR ERV1 -23 711 1 2193 119 23 0 chr1 177776559 177776862 -64887491 + AluSg SINE Alu 1 310 0 418 293 27 20 chr1 177778194 177778341 -64886012 - L2 LINE L2 -4 3309 3162 251 129 0 6 chr1 177778343 177778390 -64885963 - MLT2C1 LTR ERVL -1 396 357 1815 143 22 49 chr1 177778430 177778751 -64885602 - MLT2C1 LTR ERVL -40 357 53 2367 79 3 25 chr1 177778751 177779066 -64885287 + AluY SINE Alu 3 310 -1 1815 143 22 49 chr1 177779066 177779114 -64885239 - MLT2C1 LTR ERVL -344 53 5 183 186 51 34 chr1 177779475 177779534 -64884819 + L2 LINE L2 2615 2674 -640 430 236 207 19 chr1 177779577 177779891 -64884462 + L2 LINE L2 2820 3192 -121 2648 183 24 0 chr1 177779899 177780390 -64883963 - L1MB5 LINE L1 0 6174 5672 1894 194 34 25 chr1 177780859 177781130 -64883223 - MLT1C LTR MaLR -9 458 180 2365 94 20 0 chr1 177781130 177781428 -64882925 - AluSx SINE Alu -8 304 1 1894 194 34 25 chr1 177781428 177781600 -64882753 - MLT1C LTR MaLR -287 180 11 668 260 162 27 chr1 177781871 177782391 -64881962 + L2 LINE L2 2686 3292 -21 1433 191 143 50 chr1 177782754 177783210 -64881143 - MLT1D LTR MaLR -7 498 1 3624 150 44 7 chr1 177783251 177783375 -64880978 - MER41B LTR ERV1 0 635 517 2180 116 26 0 chr1 177783375 177783678 -64880675 + AluSx SINE Alu 1 311 -1 3624 150 44 7 chr1 177783678 177784165 -64880188 - MER41B LTR ERV1 -118 517 1 205 253 87 21 chr1 177784744 177784865 -64879488 + MIR SINE MIR 18 150 -62 2867 164 76 52 chr1 177785175 177785883 -64878470 - LTR8A LTR ERV1 -2 725 1 3541 131 62 68 chr1 177786265 177786997 -64877356 + LTR8A LTR ERV1 1 727 0 1473 206 111 26 chr1 177787101 177787523 -64876830 - MLT1C LTR MaLR 0 467 10 1172 203 23 0 chr1 177787557 177787774 -64876579 - MER58A DNA MER1_type -1 223 2 518 231 74 0 chr1 177788012 177788133 -64876220 - MIR SINE MIR -121 141 12 2922 159 114 35 chr1 177789527 177789594 -64874759 - MER21B LTR ERV1 0 863 803 1812 141 58 4 chr1 177789594 177789870 -64874483 + AluSx SINE Alu 1 291 -21 2922 159 114 35 chr1 177789870 177790407 -64873946 - MER21B LTR ERV1 -60 803 211 1520 152 34 0 chr1 177790450 177790746 -64873607 + MER33 DNA MER1_type 5 310 -14 2058 152 16 0 chr1 177790749 177791052 -64873301 - AluJb SINE Alu -4 308 1 26 0 0 0 chr1 177791155 177791181 -64873172 + AT_rich Low_complexity Low_complexity 1 26 0 218 330 179 0 chr1 177791648 177791760 -64872593 + MIR3 SINE MIR 60 191 -17 1733 129 24 0 chr1 177791959 177792207 -64872146 + AluSq SINE Alu 1 254 -59 619 254 77 11 chr1 177792802 177792892 -64871461 - L2 LINE L2 -2 3311 3228 2208 127 38 24 chr1 177792892 177793262 -64871091 + THE1C LTR MaLR 1 375 0 619 254 77 11 chr1 177793262 177793352 -64871001 - L2 LINE L2 -85 3228 3119 388 251 83 83 chr1 177793413 177793505 -64870848 + L1MEd LINE L1 843 934 -5185 1966 168 0 0 chr1 177793505 177793797 -64870556 + AluJo SINE Alu 1 292 -20 388 251 83 83 chr1 177793797 177794067 -64870286 + L1MEd LINE L1 933 1205 -4914 292 228 47 60 chr1 177794239 177794388 -64869965 + L1MEd LINE L1 1285 1431 -4700 1633 216 27 32 chr1 177794667 177795038 -64869315 + MLT1A2 LTR MaLR 4 372 -2 1566 138 37 37 chr1 177795267 177795544 -64868809 + Tigger2a DNA MER2_type 1 280 -2428 1796 189 24 0 chr1 177795544 177795840 -64868513 + AluJb SINE Alu 1 303 -9 1566 138 37 37 chr1 177795840 177795859 -64868494 + Tigger2a DNA MER2_type 279 297 -137 2498 180 32 12 chr1 177797327 177797822 -64866531 - LTR22 LTR ERVK -4 505 1 245 273 7 33 chr1 177798228 177798378 -64865975 + (TTG)n Simple_repeat Simple_repeat 1 146 0 22 35 0 0 chr1 177798985 177799014 -64865339 + AT_rich Low_complexity Low_complexity 1 29 0 596 281 61 30 chr1 177799142 177799306 -64865047 + MIR SINE MIR 3 171 -91 1334 274 75 72 chr1 177799342 177799470 -64864883 - L1MC4a LINE L1 -585 5571 5445 1691 89 138 12 chr1 177799470 177799738 -64864615 + AluSg1 SINE Alu 1 299 0 1334 274 75 72 chr1 177799738 177800785 -64863568 - L1MC4a LINE L1 -711 5445 4741 2182 206 47 21 chr1 177800993 177801526 -64862827 - MER77 LTR ERV1 -18 587 41 761 283 37 66 chr1 177801528 177801634 -64862719 - L1MC4a LINE L1 -2745 3401 3293 1452 172 35 19 chr1 177801634 177801895 -64862458 - AluJo SINE Alu -7 305 41 761 283 37 66 chr1 177801895 177802195 -64862158 - L1MC4a LINE L1 -2853 3293 3007 1788 190 80 34 chr1 177802198 177802613 -64861740 - MLT2B1 LTR ERVL -2 518 85 1991 160 0 3 chr1 177802617 177802917 -64861436 + AluSx SINE Alu 7 305 -7 1056 167 11 22 chr1 177802917 177803097 -64861256 + AluJb SINE Alu 134 311 -1 512 132 11 0 chr1 177803097 177803188 -64861165 - MLT2B1 LTR ERVL -423 92 1 262 275 2 0 chr1 177803194 177803271 -64861082 - L1M4 LINE L1 -3142 3004 2927 27 29 0 0 chr1 177803607 177803641 -64860712 + AT_rich Low_complexity Low_complexity 1 34 0 2041 110 0 57 chr1 177803651 177803975 -64860378 + AluSx SINE Alu 1 307 0 473 333 30 12 chr1 177804004 177804169 -64860184 - MIR SINE MIR -44 218 51 310 209 58 0 chr1 177805017 177805103 -64859250 + L1ME4a LINE L1 6026 6116 -5 418 262 83 28 chr1 177805516 177805661 -64858692 + MIR SINE MIR 109 261 -1 276 269 177 5 chr1 177805731 177805917 -64858436 + MARNA DNA Mariner 313 530 -56 206 304 58 65 chr1 177806051 177806189 -64858164 - L2 LINE L2 -18 3295 3159 517 206 109 87 chr1 177806398 177806612 -64857741 - MIR SINE MIR -33 229 2 1856 161 38 50 chr1 177807349 177807766 -64856587 + MSTC LTR MaLR 17 428 0 360 189 0 0 chr1 177808429 177808503 -64855850 + (CA)n Simple_repeat Simple_repeat 2 75 0 326 203 17 0 chr1 177808694 177808753 -64855600 - L2 LINE L2 0 3313 3254 634 330 21 18 chr1 177808791 177809073 -64855280 + L2 LINE L2 2412 2694 -620 1034 276 59 89 chr1 177809098 177809764 -64854589 + MER21B LTR ERV1 21 666 -197 330 338 85 27 chr1 177809789 177810308 -64854045 + L2 LINE L2 2683 3236 -36 1893 158 3 13 chr1 177810556 177810866 -64853487 - AluSx SINE Alu -1 311 5 4406 244 56 22 chr1 177811485 177812810 -64851543 + L1MC4 LINE L1 6461 7830 -212 2133 117 0 3 chr1 177812820 177813127 -64851226 + AluSx SINE Alu 1 306 0 260 310 99 58 chr1 177813916 177814158 -64850195 - L2 LINE L2 -421 2893 2642 465 281 76 19 chr1 177814802 177814977 -64849376 + MIR SINE MIR 2 181 -37 261 139 0 0 chr1 177817135 177817178 -64847175 + (CA)n Simple_repeat Simple_repeat 2 44 0 445 263 51 42 chr1 177817184 177817382 -64846971 - MIR SINE MIR -57 151 5 677 310 247 12 chr1 177817445 177818036 -64846317 - L3 LINE CR1 -4 1573 844 1511 140 0 9 chr1 177819387 177819615 -64844738 + AluJo SINE Alu 86 311 -1 426 296 209 24 chr1 177819928 177820350 -64844003 - L2 LINE L2 -5 3308 2809 1960 93 46 29 chr1 177820493 177820773 -64843580 + AluSg SINE Alu 5 289 -21 656 96 44 12 chr1 177821059 177821318 -64843035 + (TG)n Simple_repeat Simple_repeat 1 267 0 564 110 43 12 chr1 177821344 177821508 -64842845 + (TG)n Simple_repeat Simple_repeat 2 170 0 287 205 13 13 chr1 177821637 177821715 -64842638 + (TG)n Simple_repeat Simple_repeat 1 78 0 198 235 0 82 chr1 177822176 177822261 -64842092 - L3 LINE CR1 -600 977 900 452 217 0 115 chr1 177822674 177822831 -64841522 + MIR SINE MIR 114 252 -10 186 293 49 98 chr1 177823479 177823561 -64840792 + MIR3 SINE MIR 45 121 -87 2566 68 7 0 chr1 177823561 177823869 -64840484 - AluSp SINE Alu -3 310 1 186 293 49 98 chr1 177823869 177823909 -64840444 + MIR3 SINE MIR 121 161 -47 668 238 6 50 chr1 177824678 177824859 -64839494 + MER5B DNA MER1_type 6 178 0 250 262 24 79 chr1 177824929 177825055 -64839298 + L2 LINE L2 2923 3041 -272 2336 80 0 20 chr1 177825354 177825492 -64838861 + AluSx SINE Alu 1 140 -172 2279 72 28 0 chr1 177825492 177825783 -64838570 + AluY SINE Alu 1 299 -12 2336 80 0 20 chr1 177825783 177825946 -64838407 + AluSx SINE Alu 140 296 -16 655 203 0 51 chr1 177826972 177827165 -64837188 + FLAM_A SINE Alu 2 133 0 319 250 0 0 chr1 177827439 177827511 -64836842 + MIR SINE MIR 62 133 -129 556 274 62 6 chr1 177829749 177829928 -64834425 - MIR SINE MIR -2 260 72 735 258 91 20 chr1 177829943 177830141 -64834212 - AluJo SINE Alu -99 213 2 2325 110 0 7 chr1 177830262 177830570 -64833783 + AluSx SINE Alu 1 306 -6 272 251 165 53 chr1 177830694 177830896 -64833457 + MIR SINE MIR 14 242 -20 361 329 86 5 chr1 177831729 177831884 -64832469 - MIR SINE MIR -62 146 3 * 573 252 123 66 chr1 177831878 177831900 -64832453 + L2 LINE L2 2521 2540 -774 2159 118 7 13 chr1 177831900 177832036 -64832317 + AluSx SINE Alu 1 136 -176 2438 64 6 32 chr1 177832036 177832347 -64832006 + AluY SINE Alu 1 303 -8 2159 118 7 13 chr1 177832347 177832515 -64831838 + AluSx SINE Alu 136 303 -9 573 252 123 66 chr1 177832515 177832809 -64831544 + L2 LINE L2 2540 2855 -459 590 259 65 20 chr1 177832879 177833080 -64831273 + L2 LINE L2 3104 3313 0 238 203 14 14 chr1 177833494 177833568 -64830785 + GA-rich Low_complexity Low_complexity 3 76 0 2306 94 16 7 chr1 177833988 177834296 -64830057 - AluJo SINE Alu -1 311 1 1032 193 112 30 chr1 177834420 177834653 -64829700 + MIR SINE MIR 8 259 -3 184 245 19 19 chr1 177834876 177834929 -64829424 + L2 LINE L2 2921 2973 -299 306 146 0 0 chr1 177835002 177835050 -64829303 + MER96 DNA MER1_type? 37 84 -91 441 297 88 36 chr1 177835050 177835299 -64829054 + L2 LINE L2 3008 3269 -3 197 309 59 0 chr1 177835550 177835618 -64828735 - L2 LINE L2 -1 3271 3200 2144 147 0 0 chr1 177835834 177836133 -64828220 + AluSx SINE Alu 1 299 -13 262 321 35 45 chr1 177836667 177836996 -64827357 - L2 LINE L2 -189 3083 2758 248 314 186 48 chr1 177837025 177837315 -64827038 - L2 LINE L2 -652 2662 2324 1599 109 133 31 chr1 177837315 177837607 -64826746 + AluSx SINE Alu 1 318 0 248 314 186 48 chr1 177837607 177837627 -64826726 - L2 LINE L2 -990 2324 2308 353 296 92 82 chr1 177837652 177837754 -64826599 + MIR SINE MIR 49 149 -113 1978 136 0 14 chr1 177837754 177838041 -64826312 - AluSx SINE Alu -19 293 11 353 296 92 82 chr1 177838041 177838144 -64826209 + MIR SINE MIR 149 256 -6 281 302 60 26 chr1 177838662 177838778 -64825575 + L2 LINE L2 3142 3261 -11 2277 88 17 14 chr1 177839223 177839519 -64824834 + AluSq SINE Alu 1 297 -16 626 276 75 7 chr1 177840918 177841102 -64823251 - MIR3 SINE MIR -1 207 11 1647 148 18 22 chr1 177841200 177841477 -64822876 + AluJb SINE Alu 35 310 -2 1894 151 3 41 chr1 177841480 177841603 -64822750 + AluJo SINE Alu 3 129 -183 1909 158 7 13 chr1 177841603 177841907 -64822446 - AluSx SINE Alu -10 302 1 1894 151 3 41 chr1 177841907 177842101 -64822252 + AluJo SINE Alu 129 308 -4 688 108 0 0 chr1 177842500 177842593 -64821760 - AluS SINE Alu -220 93 1 1092 162 50 0 chr1 177842918 177843097 -64821256 - MER5A DNA MER1_type -1 188 1 2742 120 52 26 chr1 177843231 177843542 -64820811 + MER6 DNA MER2_type 129 431 -434 2140 126 3 10 chr1 177843542 177843851 -64820502 + AluJb SINE Alu 1 307 -5 2742 120 52 26 chr1 177843851 177844004 -64820349 + MER6 DNA MER2_type 431 865 0 510 294 57 16 chr1 177845561 177845755 -64818598 - MIR SINE MIR -10 252 51 389 280 170 16 chr1 177845759 177845941 -64818412 - LTR16C LTR ERVL 0 491 282 632 203 66 96 chr1 177846267 177846464 -64817889 - L2 LINE L2 0 3313 3123 2062 126 11 0 chr1 177846508 177846786 -64817567 + AluSp SINE Alu 1 281 -32 215 318 47 72 chr1 177847000 177847236 -64817117 - L2 LINE L2 -339 2975 2746 303 183 24 73 chr1 177849510 177849592 -64814761 + L2 LINE L2 3231 3308 -5 415 298 60 48 chr1 177849650 177849898 -64814455 - L3 LINE CR1 -3 1574 1324 180 176 0 0 chr1 177851308 177851342 -64813011 + CT-rich Low_complexity Low_complexity 4 37 0 212 0 0 35 chr1 177852492 177852521 -64811832 + (CCCCG)n Simple_repeat Simple_repeat 1 28 0 33 66 0 0 chr1 177852626 177852687 -64811666 + GC_rich Low_complexity Low_complexity 1 61 0 901 214 38 13 chr1 177854158 177854445 -64809908 + MLT1A2 LTR MaLR 1 374 0 300 314 8 58 chr1 177854569 177854690 -64809663 - MIR SINE MIR -121 141 27 183 323 62 0 chr1 177854668 177854733 -64809620 - L2 LINE L2 -16 3256 3188 * 230 301 15 7 chr1 177856172 177856308 -64808045 + L1P LINE L1 3106 3242 -2904 546 281 138 53 chr1 177856945 177857492 -64806861 + L2 LINE L2 2589 3267 -5 1095 140 24 0 chr1 177859333 177859497 -64804856 + FRAM SINE Alu 1 160 -16 1258 184 124 15 chr1 177859500 177859766 -64804587 + AluSg SINE Alu 1 295 -15 515 220 233 13 chr1 177860169 177860319 -64804034 - MER5A DNA MER1_type -3 186 4 324 0 0 0 chr1 177861637 177861673 -64802680 + (A)n Simple_repeat Simple_repeat 1 36 0 1327 150 211 13 chr1 177862703 177863016 -64801337 + THE1C LTR MaLR 1 375 0 2309 106 0 0 chr1 177864356 177864649 -64799704 + AluSx SINE Alu 1 293 -19 1337 66 0 0 chr1 177864685 177864837 -64799516 - AluSq SINE Alu -159 154 3 847 191 111 10 chr1 177865498 177865697 -64798656 - MIR SINE MIR 0 262 44 726 117 0 10 chr1 177865697 177865800 -64798553 + FLAM_C SINE Alu 2 103 -40 192 40 0 0 chr1 177865820 177865845 -64798508 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 312 143 20 0 chr1 177865853 177865902 -64798451 - MIR SINE MIR -211 51 2 26 64 0 0 chr1 177868689 177868736 -64795617 + GC_rich Low_complexity Low_complexity 1 47 0 25 83 0 0 chr1 177869122 177869182 -64795171 + GC_rich Low_complexity Low_complexity 1 60 0 180 275 114 54 chr1 177870656 177870805 -64793548 + MIR SINE MIR 34 191 -71 992 281 4 23 chr1 177871184 177871328 -64793025 + MIR SINE MIR 2 140 -122 2183 127 0 19 chr1 177871328 177871642 -64792711 + AluSx SINE Alu 1 308 -4 992 281 4 23 chr1 177871642 177871757 -64792596 + MIR SINE MIR 140 256 -6 2388 98 0 3 chr1 177872206 177872511 -64791842 + AluSg SINE Alu 1 304 -6 226 250 83 0 chr1 177873151 177873223 -64791130 + MIR SINE MIR 36 113 -95 382 177 40 12 chr1 177873260 177873384 -64790969 + MIR SINE MIR 92 262 0 293 301 12 0 chr1 177873382 177873465 -64790888 + L2 LINE L2 3222 3305 -8 * 186 188 0 0 chr1 177873488 177873520 -64790833 + L2 LINE L2 3272 3303 -10 1943 124 89 0 chr1 177874385 177874667 -64789686 - AluSx SINE Alu -5 307 1 2469 69 0 34 chr1 177874764 177875084 -64789269 - AluSc SINE Alu 0 309 1 2074 132 26 7 chr1 177875280 177875584 -64788769 - AluSx SINE Alu -2 310 1 750 189 30 6 chr1 177875757 177875921 -64788432 + Charlie5 DNA MER1_type 1 168 -2444 911 146 62 14 chr1 177875938 177876177 -64788176 + Charlie5 DNA MER1_type 2352 2624 0 264 358 0 11 chr1 177876622 177876717 -64787636 + L2 LINE L2 2720 2813 -501 795 207 30 6 chr1 177876853 177877022 -64787331 + MER5B DNA MER1_type 1 173 -5 2242 93 34 0 chr1 177877174 177877465 -64786888 + AluSq SINE Alu 1 301 -12 1807 111 42 15 chr1 177877756 177878018 -64786335 + AluSx SINE Alu 32 300 -12 1214 131 23 6 chr1 177878964 177879140 -64785213 + AluSq SINE Alu 117 295 -18 2184 122 0 0 chr1 177879252 177879540 -64784813 + AluSx SINE Alu 7 294 -18 327 277 79 10 chr1 177881255 177881356 -64782997 + L2 LINE L2 3138 3245 -27 252 246 14 58 chr1 177881580 177881649 -64782704 + L2 LINE L2 3205 3270 -2 1520 161 55 38 chr1 177882842 177883134 -64781219 - AluJb SINE Alu -9 303 7 2253 99 119 59 chr1 177883233 177883468 -64780885 - MSTA LTR MaLR 0 428 158 2184 125 0 0 chr1 177883468 177883756 -64780597 - AluSx SINE Alu -18 294 7 2253 99 119 59 chr1 177883756 177883924 -64780429 - MSTA LTR MaLR -270 158 1 229 354 13 70 chr1 177883951 177884014 -64780339 + L2 LINE L2 3117 3182 -90 2387 99 0 0 chr1 177884014 177884318 -64780035 - AluSx SINE Alu -8 304 1 229 354 13 70 chr1 177884318 177884412 -64779941 + L2 LINE L2 3182 3265 -7 325 339 134 6 chr1 177884421 177884592 -64779761 + MIR3 SINE MIR 2 194 -14 780 229 72 0 chr1 177884681 177884834 -64779519 + FRAM SINE Alu 3 166 0 22 0 0 0 chr1 177884959 177884981 -64779372 + AT_rich Low_complexity Low_complexity 1 22 0 388 322 53 33 chr1 177884987 177885139 -64779214 - L2 LINE L2 -1 3271 3117 446 254 66 0 chr1 177885391 177885513 -64778840 + L2 LINE L2 3184 3313 0 2155 124 7 0 chr1 177885534 177885824 -64778529 + AluSx SINE Alu 6 297 -15 546 119 46 64 chr1 177885824 177885933 -64778420 + L1MB2 LINE L1 6065 6171 0 200 288 95 3 chr1 177885933 177885959 -64778394 - MIR SINE MIR -108 100 78 2257 95 0 33 chr1 177885959 177886264 -64778089 + AluSx SINE Alu 1 295 -17 200 288 95 3 chr1 177886264 177886325 -64778028 - MIR SINE MIR -130 78 15 2349 78 0 0 chr1 177886505 177886822 -64777531 + AluSc SINE Alu 1 317 0 2275 101 0 26 chr1 177886833 177887141 -64777212 + AluSx SINE Alu 1 300 -12 1061 218 72 49 chr1 177887184 177887533 -64776820 - MLT1L LTR MaLR -139 476 120 1790 115 0 0 chr1 177888531 177888766 -64775587 - AluSq SINE Alu -78 235 1 1892 122 47 0 chr1 177889124 177889420 -64774933 + AluSp SINE Alu 1 310 -3 2813 201 43 4 chr1 177889574 177890275 -64774078 - L1MD2 LINE L1 -6 6353 5577 1481 94 20 67 chr1 177890274 177890373 -64773980 + L1MA1 LINE L1 6035 6137 -165 * 2271 58 0 20 chr1 177890373 177890690 -64773663 - AluY SINE Alu 0 311 1 1481 94 20 67 chr1 177890690 177890842 -64773511 + L1MA1 LINE L1 6137 6276 -26 298 151 0 3 chr1 177890878 177890935 -64773418 - L1MD2 LINE L1 -787 5518 5465 1097 193 0 24 chr1 177891002 177891215 -64773138 - AluJb SINE Alu -51 261 54 411 197 26 0 chr1 177891223 177891299 -64773054 - AluJb SINE Alu -224 78 1 534 180 7 17 chr1 177891300 177891442 -64772911 - L1M2 LINE L1 -762 5480 5345 338 204 20 51 chr1 177891442 177891492 -64772861 + MIR3 SINE MIR 102 149 -59 2413 72 0 0 chr1 177891492 177891797 -64772556 + AluSg SINE Alu 2 306 -4 338 204 20 51 chr1 177891797 177891844 -64772509 + MIR3 SINE MIR 149 196 -12 3392 127 81 7 chr1 177892163 177892722 -64771631 - MER4E LTR ERV1 0 779 180 64 43 0 0 chr1 177892722 177892814 -64771539 + AT_rich Low_complexity Low_complexity 1 92 0 1023 103 0 69 chr1 177892815 177892990 -64771363 - AluSg/x SINE Alu -23 287 125 2209 77 3 20 chr1 177892993 177893290 -64771063 - AluSg SINE Alu -18 292 1 1386 96 16 0 chr1 177893291 177893478 -64770875 - MER4E LTR ERV1 -589 190 1 535 258 168 20 chr1 177893562 177893784 -64770569 + MIR SINE MIR 14 261 -1 347 278 103 16 chr1 177893873 177893999 -64770354 - MIR SINE MIR -70 192 56 193 296 20 71 chr1 177893981 177894079 -64770274 - L2 LINE L2 -75 3197 3105 * 2311 87 0 7 chr1 177894439 177894748 -64769605 - AluSq SINE Alu -2 311 5 285 151 0 38 chr1 177894955 177895008 -64769345 - L2 LINE L2 -1 3312 3262 244 260 0 0 chr1 177896724 177896774 -64767579 - L2 LINE L2 -5 3267 3218 487 268 68 37 chr1 177897015 177897205 -64767148 + MER91A DNA MER1_type 1 196 0 2024 183 79 23 chr1 177898046 177898488 -64765865 + MLT1C LTR MaLR 1 467 0 1255 233 49 76 chr1 177898522 177899071 -64765282 + MLT1G1 LTR MaLR 1 537 -18 200 279 0 0 chr1 177900077 177900145 -64764208 + A-rich Low_complexity Low_complexity 1 68 0 2291 80 3 0 chr1 177900422 177900721 -64763632 - AluSp SINE Alu -12 301 2 2010 125 3 3 chr1 177901315 177901611 -64762742 - AluSx SINE Alu -14 298 3 2065 100 4 4 chr1 177902040 177902367 -64761986 - AluSc SINE Alu 0 327 1 327 304 181 7 chr1 177902738 177902876 -64761477 + L3 LINE CR1 1405 1566 -11 2172 103 0 31 chr1 177903561 177903882 -64760471 - AluSq SINE Alu -2 311 1 562 250 9 0 chr1 177904102 177904214 -64760139 + L2 LINE L2 3197 3309 -4 1968 142 0 6 chr1 177905038 177905349 -64759004 - AluJo SINE Alu -1 311 3 2287 81 7 3 chr1 177905355 177905662 -64758691 - AluSx SINE Alu 0 312 5 735 157 0 15 chr1 177905672 177905806 -64758547 + Charlie1 DNA MER1_type 2629 2760 -1 216 111 0 0 chr1 177907166 177907202 -64757151 + (T)n Simple_repeat Simple_repeat 1 36 0 1622 173 42 0 chr1 177907459 177907742 -64756611 - AluJb SINE Alu -17 295 1 2095 112 0 3 chr1 177909904 177910198 -64754155 - AluSg SINE Alu -17 293 1 2184 97 0 7 chr1 177910206 177910516 -64753837 - AluSg1 SINE Alu -1 308 1 2221 102 0 13 chr1 177910522 177910836 -64753517 - AluSg SINE Alu 0 310 1 2087 125 0 0 chr1 177910838 177911133 -64753220 - AluSg SINE Alu -15 295 1 4482 112 104 134 chr1 177911324 177912802 -64751551 - pTR5 LTR ERV1 0 2438 741 1606 283 30 71 chr1 177913280 177914001 -64750352 - MER115 DNA AcHobo 0 693 2 2509 47 0 25 chr1 177914189 177914508 -64749845 + AluY SINE Alu 1 311 0 201 147 0 0 chr1 177914717 177914751 -64749602 + (TG)n Simple_repeat Simple_repeat 2 35 0 1415 167 86 0 chr1 177914753 177915010 -64749343 - AluJo SINE Alu -32 280 2 336 243 65 47 chr1 177915451 177915558 -64748795 + L2 LINE L2 3200 3308 -5 653 135 0 0 chr1 177915637 177915733 -64748620 - AluSg/x SINE Alu -22 287 192 1513 136 23 11 chr1 177915966 177916230 -64748123 + AluJb SINE Alu 1 267 -45 284 158 18 0 chr1 177916230 177916287 -64748066 + GA-rich Low_complexity Low_complexity 3 60 0 321 236 121 85 chr1 177916295 177916494 -64747859 - L1ME4a LINE L1 -118 6003 5798 24 0 0 0 chr1 177916855 177916879 -64747474 + AT_rich Low_complexity Low_complexity 1 24 0 369 58 0 0 chr1 177916921 177916973 -64747380 + (TG)n Simple_repeat Simple_repeat 2 53 0 619 273 44 11 chr1 177917056 177917239 -64747114 + MIR SINE MIR 3 191 -71 2369 70 0 0 chr1 177917367 177917666 -64746687 + AluY SINE Alu 1 299 -12 223 275 83 73 chr1 177917727 177917784 -64746569 + MIR SINE MIR 153 213 -49 2073 125 63 29 chr1 177917784 177918135 -64746218 - THE1B LTR MaLR 0 364 2 223 275 83 73 chr1 177918135 177918186 -64746167 + MIR SINE MIR 213 262 0 1125 157 15 20 chr1 177918426 177918654 -64745699 - AluJb SINE Alu 0 312 86 295 294 183 0 chr1 177918831 177919028 -64745325 - L1ME4a LINE L1 -152 5969 5737 4884 125 44 30 chr1 177919349 177920220 -64744133 + L1MB2 LINE L1 5285 6167 -4 2343 75 0 0 chr1 177920220 177920514 -64743839 - AluSc SINE Alu -15 294 1 42 0 0 0 chr1 177920516 177920558 -64743795 + AT_rich Low_complexity Low_complexity 1 42 0 581 201 63 69 chr1 177920957 177921131 -64743222 - L1ME2 LINE L1 -29 6135 5963 221 163 23 0 chr1 177921161 177921204 -64743149 + G-rich Low_complexity Low_complexity 3 46 0 198 103 0 0 chr1 177921264 177921293 -64743060 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 204 40 0 0 chr1 177921411 177921436 -64742917 + (CA)n Simple_repeat Simple_repeat 2 26 0 251 326 71 20 chr1 177921598 177921696 -64742657 - L2 LINE L2 -49 3223 3121 293 331 92 32 chr1 177921701 177921952 -64742401 + L2 LINE L2 2367 2632 -682 261 284 179 0 chr1 177922281 177922376 -64741977 + L2 LINE L2 3180 3291 -22 * 564 273 192 5 chr1 177922366 177922564 -64741789 - MIR SINE MIR -20 242 8 360 196 72 31 chr1 177922965 177923062 -64741291 - MIR SINE MIR -56 206 106 532 232 137 36 chr1 177923087 177923255 -64741098 + MIR SINE MIR 63 247 -15 295 266 98 109 chr1 177923521 177923618 -64740735 + MIR SINE MIR 56 152 -110 1790 140 0 3 chr1 177923618 177923903 -64740450 + AluJb SINE Alu 6 289 -23 295 266 98 109 chr1 177923903 177923989 -64740364 + MIR SINE MIR 152 237 -25 239 67 0 0 chr1 177924305 177924335 -64740018 + (GA)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr1 177924494 177924516 -64739837 + (GA)n Simple_repeat Simple_repeat 1 22 0 1336 136 125 0 chr1 177927043 177927315 -64737038 - Charlie5 DNA MER1_type 0 2620 2315 1203 136 0 0 chr1 177927318 177927494 -64736859 - AluSg/x SINE Alu -18 292 117 1295 44 0 6 chr1 177927506 177927664 -64736689 - AluY SINE Alu -154 157 1 255 167 17 33 chr1 177927665 177927725 -64736628 - Charlie5 DNA MER1_type -320 2292 2234 356 154 167 0 chr1 177927742 177927820 -64736533 - Charlie5 DNA MER1_type -2521 91 1 184 264 70 93 chr1 177928127 177928256 -64736097 + L2 LINE L2 3137 3262 -10 543 273 65 74 chr1 177928384 177928615 -64735738 - MIR SINE MIR 0 262 34 264 311 81 19 chr1 177928687 177928848 -64735505 - L2 LINE L2 -560 2754 2584 349 250 106 0 chr1 177928931 177929035 -64735318 - MIR SINE MIR -91 171 57 541 349 134 14 chr1 177929039 177929126 -64735227 - L1ME4a LINE L1 -157 5964 5889 2018 127 6 19 chr1 177929126 177929442 -64734911 - AluSx SINE Alu 0 312 1 541 349 134 14 chr1 177929442 177929778 -64734575 - L1ME4a LINE L1 -232 5889 5490 2270 45 0 24 chr1 177930126 177930441 -64733912 - AluY SINE Alu 0 308 1 1856 86 60 4 chr1 177930448 177930740 -64733613 - AluSx SINE Alu 0 308 2 214 268 0 54 chr1 177930847 177930903 -64733450 + L2 LINE L2 3122 3174 -98 2283 80 3 3 chr1 177931587 177931886 -64732467 + AluSg SINE Alu 1 299 -11 951 285 108 25 chr1 177932115 177932522 -64731831 - L2 LINE L2 -22 3291 2851 2000 104 4 4 chr1 177932963 177933285 -64731068 - AluSg SINE Alu 0 322 1 382 200 0 0 chr1 177933729 177933804 -64730549 + MER116 DNA Mariner 6 80 0 2388 90 0 0 chr1 177934193 177934503 -64729850 - AluSx SINE Alu -2 310 1 337 295 50 29 chr1 177934512 177934651 -64729702 - L2 LINE L2 -14 3299 3158 521 237 67 80 chr1 177934850 177934982 -64729371 - MIR SINE MIR -14 248 119 2252 99 0 3 chr1 177934982 177935285 -64729068 + AluSp SINE Alu 1 302 -11 521 237 67 80 chr1 177935285 177935376 -64728977 - MIR SINE MIR -143 119 28 612 259 124 8 chr1 177935948 177936214 -64728139 - L2 LINE L2 -44 3269 2973 238 388 108 22 chr1 177937260 177937492 -64726861 - L2 LINE L2 -4 3268 3017 1323 291 56 26 chr1 177937677 177938178 -64726175 - LTR33 LTR ERVL -4 517 2 470 198 99 0 chr1 177938628 177938719 -64725634 + L2 LINE L2 3200 3299 -14 1431 133 30 121 chr1 177938736 177939066 -64725287 - AluYb8 SINE Alu -18 300 1 905 202 61 0 chr1 177939079 177939277 -64725076 - L1PB4 LINE L1 0 6156 5947 244 226 0 0 chr1 177939691 177939744 -64724609 + A-rich Low_complexity Low_complexity 5 57 0 224 369 70 6 chr1 177940863 177941020 -64723333 + MIR SINE MIR 48 214 -48 2493 156 83 8 chr1 177941048 177941129 -64723224 + MLT1D LTR MaLR 1 75 -430 204 40 0 0 chr1 177941129 177941154 -64723199 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2493 156 83 8 chr1 177941154 177941540 -64722813 + MLT1D LTR MaLR 75 503 -2 1290 68 12 0 chr1 177941875 177942038 -64722315 + AluY SINE Alu 1 165 -146 1146 134 6 0 chr1 177942144 177942315 -64722038 - AluSx SINE Alu -129 183 12 294 227 23 11 chr1 177944108 177944248 -64720105 + MER5A DNA MER1_type 3 189 0 2651 87 26 3 chr1 177944736 177945083 -64719270 + THE1A LTR MaLR 1 355 0 12227 87 4 3 chr1 177945083 177946661 -64717692 + THE1A-int LTR MaLR 1 1580 0 2493 113 26 0 chr1 177946663 177947007 -64717346 + THE1A LTR MaLR 3 355 0 561 235 100 12 chr1 177947277 177947447 -64716906 - MIR SINE MIR -16 246 62 454 273 77 7 chr1 177948330 177948473 -64715880 - MIR SINE MIR -71 191 39 423 261 222 0 chr1 177950187 177950363 -64713990 + MER112 DNA MER1_type 46 260 0 315 300 28 66 chr1 177950506 177950745 -64713608 + MIR SINE MIR 4 228 -34 1982 123 30 3 chr1 177952253 177952554 -64711799 + AluSx SINE Alu 3 311 -1 180 0 0 0 chr1 177954344 177954364 -64709989 + (TTG)n Simple_repeat Simple_repeat 2 21 0 342 287 47 40 chr1 177957729 177957879 -64706474 - MIR SINE MIR -48 214 64 931 242 157 32 chr1 177958024 177958777 -64705576 + L2 LINE L2 2469 3311 -2 180 176 0 0 chr1 177958943 177958977 -64705376 + C-rich Low_complexity Low_complexity 3 36 0 2266 94 7 0 chr1 177959437 177959746 -64704607 - AluSq SINE Alu -2 311 1 386 372 109 26 chr1 177962387 177962734 -64701619 - L2 LINE L2 -375 2939 2564 959 148 47 0 chr1 177963455 177963709 -64700644 + AluJb SINE Alu 136 397 0 2048 121 0 0 chr1 177963816 177964105 -64700248 - AluSx SINE Alu -15 297 9 776 296 162 35 chr1 177964111 177965048 -64699305 - L2 LINE L2 -3 3310 2234 1763 171 0 3 chr1 177965618 177965922 -64698431 - AluJb SINE Alu -9 303 1 2483 61 10 0 chr1 177965946 177966256 -64698097 - AluSp SINE Alu 0 313 1 1804 146 3 46 chr1 177967189 177967512 -64696841 + AluSx SINE Alu 1 309 -3 1435 167 49 8 chr1 177967654 177967918 -64696435 - ORSL DNA AcHobo 0 275 1 2265 85 0 0 chr1 177969796 177970091 -64694262 - AluY SINE Alu -16 295 1 265 226 131 12 chr1 177970712 177970796 -64693557 + L2 LINE L2 2226 2319 -995 714 296 78 0 chr1 177970975 177971181 -64693172 - MIR SINE MIR -21 241 20 407 337 80 34 chr1 177971240 177971504 -64692849 + L2 LINE L2 2997 3272 0 189 0 0 0 chr1 177973731 177973752 -64690601 + (T)n Simple_repeat Simple_repeat 1 21 0 248 196 0 0 chr1 177974207 177974258 -64690095 + MIR3 SINE MIR 104 154 -54 183 67 67 0 chr1 177974995 177975025 -64689328 + L2 LINE L2 3196 3227 -86 535 269 123 4 chr1 177975087 177975314 -64689039 + MIR SINE MIR 1 254 -8 227 31 31 0 chr1 177975317 177975349 -64689004 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4061 195 74 10 chr1 177976759 177977569 -64686784 + MER21B LTR ERV1 1 862 -1 321 351 20 20 chr1 177978657 177978808 -64685545 + MIR SINE MIR 2 152 -110 1888 121 26 12 chr1 177978812 177979202 -64685151 + LTR7 LTR ERV1 1 448 -2 233 250 40 0 chr1 177979212 177979288 -64685065 + MIR SINE MIR 172 250 -12 2006 154 20 14 chr1 177981063 177981421 -64682932 + MLT1A1 LTR MaLR 6 365 0 231 316 95 60 chr1 177981930 177982098 -64682255 - MIR SINE MIR -56 206 33 2206 111 0 84 chr1 177984209 177984577 -64679776 - MER1B DNA MER1_type 0 337 1 823 133 0 30 chr1 177985118 177985253 -64679100 + AluJo/FLAM SINE Alu 1 131 -171 1340 101 316 0 chr1 177985255 177985483 -64678870 + AluSx SINE Alu 1 300 -2 1162 128 6 0 chr1 177985491 177985670 -64678683 + AluYa5 SINE Alu 119 298 -13 234 319 18 26 chr1 177985745 177985858 -64678495 + MIR3 SINE MIR 88 199 -9 787 255 121 50 chr1 177986853 177986915 -64677438 + MLT1H1 LTR MaLR 1 57 -498 2283 94 7 0 chr1 177986915 177987223 -64677130 - AluSg SINE Alu 0 310 1 787 255 121 50 chr1 177987223 177987701 -64676652 + MLT1H1 LTR MaLR 57 555 0 1492 164 16 4 chr1 177987761 177988017 -64676336 + AluJo SINE Alu 41 299 -13 2238 109 3 0 chr1 177988365 177988669 -64675684 + AluSp SINE Alu 1 305 -8 1240 221 13 85 chr1 177990437 177990737 -64673616 + Charlie1a DNA MER1_type 3 272 -2489 2044 133 0 0 chr1 177990737 177991030 -64673323 + AluSx SINE Alu 1 293 -19 1240 221 13 85 chr1 177991030 177991104 -64673249 + Charlie1a DNA MER1_type 272 350 -1105 3071 186 142 21 chr1 177991107 177991844 -64672509 - L1ME1 LINE L1 -12 6154 5305 2189 126 0 10 chr1 177991844 177992154 -64672199 - AluSx SINE Alu -5 307 1 3071 186 142 21 chr1 177992154 177992245 -64672108 - L1ME1 LINE L1 -861 5305 5226 3323 172 74 130 chr1 177992245 177992831 -64671522 + Charlie1a DNA MER1_type 315 802 -1959 1220 132 113 5 chr1 177992831 177993044 -64671309 + MER46A DNA MER2_type 1 236 0 3323 172 74 130 chr1 177993044 177993650 -64670703 + Charlie1a DNA MER1_type 802 1440 -15 2081 146 24 0 chr1 177993895 177994230 -64670123 - MER2 DNA MER2_type 0 344 2 2286 109 3 0 chr1 177994976 177995278 -64669075 + AluSq SINE Alu 1 303 -10 268 282 14 14 chr1 177996279 177996350 -64668003 + MIR SINE MIR 2 72 -190 3792 179 29 20 chr1 177996428 177997128 -64667225 - MER21B LTR ERV1 -157 706 1 548 184 129 14 chr1 177997129 177997276 -64667077 + MIR SINE MIR 70 233 -29 277 307 109 0 chr1 177997941 177998042 -64666311 - L2 LINE L2 -2 3311 3200 1298 144 64 68 chr1 177998885 177999135 -64665218 + AluJb SINE Alu 1 249 -63 1260 176 153 15 chr1 177999181 177999442 -64664911 - AluSg1 SINE Alu -12 297 1 2411 107 25 8 chr1 178000711 178001077 -64663276 + THE1C LTR MaLR 1 372 -3 315 282 58 0 chr1 178002040 178002143 -64662210 + MIR SINE MIR 36 144 -64 2093 133 17 0 chr1 178002659 178002961 -64661392 + AluSx SINE Alu 1 307 -5 1663 156 85 16 chr1 178003603 178003969 -64660384 - Charlie5 DNA MER1_type 0 2623 2233 420 141 154 0 chr1 178003967 178004045 -64660308 - Charlie5 DNA MER1_type -2511 101 12 * 258 246 111 48 chr1 178004096 178004222 -64660131 - MIR SINE MIR -10 252 119 230 340 0 0 chr1 178004301 178004404 -64659949 - L1ME LINE L1 -330 5791 5689 1818 179 0 10 chr1 178004468 178004765 -64659588 + AluJb SINE Alu 2 295 -17 600 269 82 15 chr1 178005019 178005287 -64659066 - L1ME LINE L1 -313 5808 5523 629 242 95 16 chr1 178005311 178005501 -64658852 - L1ME3A LINE L1 -10 6160 5956 782 157 0 41 chr1 178005619 178005766 -64658587 - AluJo SINE Alu -171 141 1 22 0 0 0 chr1 178005820 178005842 -64658511 + AT_rich Low_complexity Low_complexity 1 22 0 2299 99 7 0 chr1 178006079 178006371 -64657982 + AluSc SINE Alu 1 294 -15 2237 144 41 25 chr1 178006372 178006809 -64657544 - L1MA4 LINE L1 0 6300 5857 308 232 202 10 chr1 178006862 178006961 -64657392 + L2 LINE L2 3196 3313 0 411 347 50 5 chr1 178007485 178007684 -64656669 + MIR SINE MIR 49 256 -6 298 145 12 12 chr1 178009366 178009449 -64654904 + (TA)n Simple_repeat Simple_repeat 2 84 0 330 190 0 0 chr1 178009782 178009840 -64654513 + L1MDa LINE L1 583 640 -5900 2281 97 3 16 chr1 178010057 178010367 -64653986 - AluSx SINE Alu -6 306 1 191 289 52 21 chr1 178012454 178012551 -64651802 - L2 LINE L2 -493 2821 2722 232 300 0 14 chr1 178012713 178012783 -64651570 + HAL1 LINE L1 38 106 -2401 1000 141 6 25 chr1 178012783 178012946 -64651407 + FRAM SINE Alu 1 160 -16 1373 197 69 7 chr1 178012987 178013292 -64651061 + MER33 DNA MER1_type 1 324 0 340 237 59 53 chr1 178014066 178014218 -64650135 - MIR SINE MIR -50 212 60 660 215 140 87 chr1 178014285 178014606 -64649747 + MER46C DNA MER2_type 1 338 0 2223 114 0 10 chr1 178014933 178015232 -64649121 - AluSx SINE Alu -16 296 1 2722 52 0 0 chr1 178015405 178015713 -64648640 - AluY SINE Alu -3 308 1 28 0 0 0 chr1 178016023 178016051 -64648302 + AT_rich Low_complexity Low_complexity 1 28 0 327 162 145 26 chr1 178016298 178016415 -64647938 + MIR SINE MIR 97 227 -35 3702 136 33 9 chr1 178018145 178018776 -64645577 - L1MC1 LINE L1 -6 6607 5962 1247 83 0 6 chr1 178018776 178018924 -64645429 + AluSg/x SINE Alu 133 281 -29 2482 186 32 42 chr1 178018948 178019273 -64645080 - L1MC1 LINE L1 -641 5972 5645 2099 141 3 0 chr1 178019273 178019571 -64644782 - AluSx SINE Alu -13 299 1 2482 186 32 42 chr1 178019571 178020196 -64644157 - L1MC1 LINE L1 -968 5645 5015 * 6022 153 71 21 chr1 178020192 178021353 -64643000 - L1MC1 LINE L1 -5189 1237 19 22 0 0 0 chr1 178021651 178021673 -64642680 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 178026606 178026634 -64637719 + AT_rich Low_complexity Low_complexity 1 28 0 2525 44 3 3 chr1 178027119 178027413 -64636940 + AluY SINE Alu 1 294 -17 303 114 0 0 chr1 178028677 178028721 -64635632 + Tigger7 DNA MER2_type 1 44 -295 355 167 0 0 chr1 178028725 178028779 -64635574 + Tigger7 DNA MER2_type 656 709 -1778 505 258 68 37 chr1 178029816 178030006 -64634347 + MER91A DNA MER1_type 1 196 0 2255 115 0 10 chr1 178030338 178030650 -64633703 - AluSx SINE Alu -3 309 1 1011 128 28 22 chr1 178031170 178031349 -64633004 + MLT1C LTR MaLR 1 180 -287 659 319 121 21 chr1 178031654 178032077 -64632276 + LTR33 LTR ERVL 44 508 -13 233 231 19 0 chr1 178032359 178032411 -64631942 + MLT1K LTR MaLR 516 568 -20 246 284 15 15 chr1 178032427 178032494 -64631859 - MIR SINE MIR -179 83 17 1114 168 5 10 chr1 178033614 178033810 -64630543 - L1PB3 LINE L1 0 6154 5960 2857 149 36 2 chr1 178035894 178036363 -64627990 + MER41C LTR ERV1 2 486 -68 503 69 0 0 chr1 178036364 178036436 -64627917 - AluSx SINE Alu -6 303 232 1379 138 5 0 chr1 178036437 178036633 -64627720 - AluSx SINE Alu -115 197 1 2430 87 0 0 chr1 178037045 178037356 -64626997 - AluY SINE Alu 0 311 1 593 224 63 7 chr1 178037746 178037889 -64626464 - MIR SINE MIR -78 184 34 301 308 0 43 chr1 178038486 178038603 -64625750 - L2 LINE L2 -251 3021 2910 255 266 26 44 chr1 178039394 178039507 -64624846 - MER5A DNA MER1_type -58 131 21 1653 170 35 40 chr1 178039723 178040099 -64624254 + MLT1A2 LTR MaLR 1 374 0 2283 107 0 3 chr1 178041196 178041494 -64622859 - AluSg SINE Alu -13 297 1 280 91 36 18 chr1 178041808 178041863 -64622490 + L1M4 LINE L1 3883 3938 -2208 23 0 0 0 chr1 178041888 178041911 -64622442 + AT_rich Low_complexity Low_complexity 1 23 0 873 165 0 0 chr1 178042168 178042301 -64622052 + FLAM_C SINE Alu 1 133 0 594 231 59 27 chr1 178042409 178042562 -64621791 + L1ME3A LINE L1 5672 5836 -334 2250 108 10 7 chr1 178042562 178042869 -64621484 + AluSg SINE Alu 1 308 -2 594 231 59 27 chr1 178042869 178042936 -64621417 + L1ME3A LINE L1 5836 5899 -271 2313 114 68 0 chr1 178043274 178043625 -64620728 - THE1C LTR MaLR 0 375 1 321 266 48 65 chr1 178043637 178043761 -64620592 + L1M4 LINE L1 4487 4608 -1538 2145 128 0 7 chr1 178043767 178044065 -64620288 + AluSx SINE Alu 1 296 -16 340 356 54 7 chr1 178044089 178044238 -64620115 + L1M4 LINE L1 4680 4835 -1311 844 256 44 28 chr1 178044253 178044318 -64620035 + L1M4 LINE L1 3995 4057 -2089 2367 93 64 9 chr1 178044318 178044661 -64619692 + THE1B LTR MaLR 1 362 -2 844 256 44 28 chr1 178044661 178044915 -64619438 + L1M4 LINE L1 4057 4319 -1827 1187 175 169 12 chr1 178044915 178045241 -64619112 - MLT1C LTR MaLR -90 377 1 1777 167 3 13 chr1 178045276 178045587 -64618766 - AluJb SINE Alu -4 308 1 234 154 0 0 chr1 178045702 178045741 -64618612 - L2 LINE L2 -4 3309 3271 530 263 39 13 chr1 178046462 178046618 -64617735 - MIR SINE MIR -82 180 21 284 77 115 0 chr1 178046703 178046755 -64617598 - AluSx SINE Alu -4 298 241 1599 90 0 5 chr1 178046756 178046956 -64617397 - AluSx SINE Alu -113 199 1 243 321 28 0 chr1 178048581 178048690 -64615663 + MIR SINE MIR 25 136 -72 257 174 0 174 chr1 178048828 178048937 -64615416 - MER103 DNA DNA -74 92 3 2386 74 10 13 chr1 178049672 178049981 -64614372 + AluY SINE Alu 3 310 -1 421 198 19 0 chr1 178050614 178050720 -64613633 + CT-rich Low_complexity Low_complexity 1 108 0 3169 333 69 15 chr1 178050735 178052959 -64611394 - ERVL LTR ERVL -1008 4756 2344 937 292 77 6 chr1 178053040 178053365 -64610988 - ERVL LTR ERVL -3850 1146 799 968 291 80 7 chr1 178053467 178053917 -64610436 - ERVL LTR ERVL -4367 629 147 192 77 0 0 chr1 178053919 178053945 -64610408 + (GGGGA)n Simple_repeat Simple_repeat 3 28 0 1906 59 0 8 chr1 178054238 178054474 -64609879 + AluY SINE Alu 1 234 -77 252 0 0 0 chr1 178054483 178054511 -64609842 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 178054557 178054578 -64609775 + AT_rich Low_complexity Low_complexity 1 21 0 194 213 0 21 chr1 178055019 178055066 -64609287 - L2 LINE L2 -5 3308 3263 26 0 0 0 chr1 178055831 178055857 -64608496 + AT_rich Low_complexity Low_complexity 1 26 0 581 167 132 18 chr1 178056389 178056503 -64607850 + FLAM_A SINE Alu 1 127 -6 2314 88 0 26 chr1 178060496 178060802 -64603551 - AluSg SINE Alu -12 298 1 243 395 53 9 chr1 178063811 178063925 -64600428 + L3 LINE CR1 1045 1163 -414 2295 107 3 0 chr1 178063969 178064267 -64600086 - AluSx SINE Alu -13 299 1 1515 201 0 11 chr1 178064440 178064723 -64599630 + AluJo SINE Alu 13 292 -20 403 287 20 70 chr1 178064756 178065000 -64599353 + L3 LINE CR1 1140 1371 -206 1768 182 3 10 chr1 178065038 178065345 -64599008 + AluJo SINE Alu 1 305 -7 208 325 83 33 chr1 178065345 178065454 -64598899 - MIR3 SINE MIR -89 119 2 2361 82 0 0 chr1 178066231 178066524 -64597829 + AluY SINE Alu 1 293 -18 314 318 98 0 chr1 178066885 178067058 -64597295 - MIR SINE MIR 0 262 73 353 124 0 135 chr1 178067228 178067317 -64597036 - MER116 DNA Mariner -1 79 3 1351 289 251 12 chr1 178067861 178068994 -64595359 - L2 LINE L2 -4 3309 1907 977 196 114 9 chr1 178069005 178069225 -64595128 + MIR SINE MIR 19 261 -1 573 265 61 20 chr1 178069231 178069427 -64594926 - L2 LINE L2 -1423 1891 1688 460 261 35 0 chr1 178069773 178069915 -64594438 - L1MEc LINE L1 -4736 1660 1514 332 256 124 8 chr1 178069969 178070090 -64594263 - L1ME3A LINE L1 -16 6154 6020 1038 268 39 28 chr1 178070094 178070527 -64593826 - L1M4 LINE L1 -1084 5062 4625 2004 248 183 28 chr1 178070544 178071037 -64593316 - L1M4 LINE L1 -1712 4434 4018 2257 122 0 0 chr1 178071037 178071340 -64593013 - AluSx SINE Alu -9 303 1 2004 248 183 28 chr1 178071340 178072165 -64592188 - L1M4 LINE L1 -2128 4018 2834 2006 163 3 0 chr1 178072165 178072466 -64591887 - AluJb SINE Alu -10 302 1 2004 248 183 28 chr1 178072466 178072713 -64591640 - L1M4 LINE L1 -3312 2834 2626 2317 99 0 0 chr1 178072993 178073286 -64591067 - AluSq SINE Alu -20 293 1 842 78 0 0 chr1 178073499 178073602 -64590751 + AluSq/x SINE Alu 1 103 -210 214 261 118 50 chr1 178074133 178074252 -64590101 - L2 LINE L2 -6 3307 3181 25 31 0 0 chr1 178074655 178074687 -64589666 + AT_rich Low_complexity Low_complexity 1 32 0 41169 29 21 1 chr1 178074850 178080881 -64583472 + L1HS LINE L1 1 6155 0 253 245 65 71 chr1 178080895 178081079 -64583274 - HAL1 LINE L1 -173 2334 2152 1810 141 29 29 chr1 178081457 178081763 -64582590 - AluJo SINE Alu -6 306 1 2179 79 0 0 chr1 178082030 178082297 -64582056 + AluY SINE Alu 38 304 -7 339 344 92 43 chr1 178082732 178082895 -64581458 - MIR3 SINE MIR -10 198 28 333 355 190 14 chr1 178083209 178083499 -64580854 - L2 LINE L2 0 3272 2932 236 283 0 0 chr1 178083633 178083686 -64580667 + L2 LINE L2 3261 3313 0 1682 220 37 19 chr1 178085529 178085957 -64578396 - MER63B DNA MER1_type 0 436 1 2588 255 49 13 chr1 178086906 178087789 -64576564 - L1ME1 LINE L1 -67 6099 5190 25 31 0 0 chr1 178088372 178088404 -64575949 + AT_rich Low_complexity Low_complexity 1 32 0 276 278 59 91 chr1 178088860 178089047 -64575306 - MIR SINE MIR -57 205 25 2308 96 7 0 chr1 178089456 178089758 -64574595 - AluSp SINE Alu -9 304 1 295 329 128 48 chr1 178089910 178090199 -64574154 - L2 LINE L2 -8 3264 2953 457 289 62 66 chr1 178090207 178090418 -64573935 - L2 LINE L2 -3 3310 3101 924 201 61 18 chr1 178090541 178090819 -64573534 - MER33 DNA MER1_type -34 290 1 452 345 93 31 chr1 178090847 178091201 -64573152 - L2 LINE L2 -653 2661 2286 311 321 135 40 chr1 178091535 178091986 -64572367 - L2 LINE L2 -1498 1816 1323 2269 102 3 0 chr1 178092015 178092308 -64572045 - AluSc SINE Alu -15 294 1 224 294 126 25 chr1 178092563 178092682 -64571671 + L2 LINE L2 3179 3309 -4 1225 252 64 62 chr1 178092862 178093491 -64570862 + LTR51 LTR ERV1 73 657 -14 780 291 100 51 chr1 178093526 178093996 -64570357 - Tigger8 DNA MER2_type -48 618 126 378 0 0 0 chr1 178094024 178094066 -64570287 + (TG)n Simple_repeat Simple_repeat 2 43 0 1011 226 127 10 chr1 178094066 178094459 -64569894 + L1MDb LINE L1 910 1348 -5061 1510 153 12 24 chr1 178094459 178094713 -64569640 + AluSx SINE Alu 1 251 -61 981 146 229 86 chr1 178094714 178094866 -64569487 - MER44D DNA MER2_type -1901 590 461 1272 174 98 11 chr1 178094866 178095141 -64569212 + AluJo SINE Alu 1 299 -13 981 146 229 86 chr1 178095141 178095268 -64569085 - MER44D DNA MER2_type -2030 461 1 1259 127 19 5 chr1 178095272 178095484 -64568869 + L1MD1 LINE L1 6028 6242 0 522 289 15 37 chr1 178095611 178095746 -64568607 + L2 LINE L2 3136 3267 -5 618 178 70 70 chr1 178096136 178096321 -64568032 + LTR37A LTR ERV1 22 206 -220 347 166 15 9 chr1 178096440 178096514 -64567839 + LTR37A LTR ERV1 292 396 -72 1623 181 13 26 chr1 178096714 178097017 -64567336 - AluJo SINE Alu -13 299 1 23 0 0 0 chr1 178097668 178097691 -64566662 + AT_rich Low_complexity Low_complexity 1 23 0 181 289 121 72 chr1 178098139 178098305 -64566048 - MER5A DNA MER1_type -13 176 3 233 265 20 0 chr1 178098368 178098417 -64565936 + MIR SINE MIR 50 99 -163 191 157 59 20 chr1 178098519 178098570 -64565783 - MIR3 SINE MIR -7 201 149 416 252 61 91 chr1 178098722 178098895 -64565458 - L1M4 LINE L1 -2235 3911 3745 4557 107 42 7 chr1 178098895 178099633 -64564720 + L1MA5A LINE L1 5524 6287 -10 416 252 61 91 chr1 178099633 178099689 -64564664 - L1M4 LINE L1 -2401 3745 3689 411 279 133 12 chr1 178100095 178100260 -64564093 - MIR SINE MIR -57 205 21 2128 118 0 16 chr1 178100946 178101261 -64563092 + AluSx SINE Alu 1 310 -2 2076 117 7 7 chr1 178101415 178101713 -64562640 - AluSx SINE Alu -14 298 1 1252 135 0 29 chr1 178101942 178102149 -64562204 + AluJo SINE Alu 75 275 -37 442 281 172 25 chr1 178102233 178102605 -64561748 - L1MC/D LINE L1 -450 5671 5361 252 203 85 0 chr1 178102730 178102789 -64561564 + MLT1I LTR MaLR 57 120 -289 374 197 23 121 chr1 178102996 178103128 -64561225 + MLT1H LTR MaLR 419 537 -12 23 78 0 0 chr1 178103345 178103396 -64560957 + AT_rich Low_complexity Low_complexity 1 51 0 2234 100 0 0 chr1 178103467 178103758 -64560595 - AluSg SINE Alu -17 293 3 199 250 0 0 chr1 178104106 178104154 -64560199 + L2 LINE L2 3261 3308 -5 223 181 53 138 chr1 178106199 178106293 -64558060 - MIR SINE MIR -47 215 130 192 260 70 100 chr1 178106437 178106537 -64557816 + L2 LINE L2 3010 3106 -166 357 336 55 8 chr1 178106673 178106801 -64557552 + L2 LINE L2 3136 3269 -3 216 0 0 0 chr1 178107100 178107124 -64557229 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 315 0 0 0 chr1 178107123 178107158 -64557195 + (CA)n Simple_repeat Simple_repeat 2 36 0 1147 202 165 64 chr1 178107197 178107219 -64557134 + Charlie2a DNA MER1_type 1561 1579 -1283 653 207 67 161 chr1 178107219 178107437 -64556916 + MER34 LTR ERV1 1 238 -304 2804 13 0 0 chr1 178107437 178107749 -64556604 - AluYb8 SINE Alu -6 312 1 653 207 67 161 chr1 178107749 178108128 -64556225 + MER34 LTR ERV1 238 542 0 1147 202 165 64 chr1 178108128 178108908 -64555445 + Charlie2a DNA MER1_type 1579 2516 -346 714 222 11 6 chr1 178108968 178109144 -64555209 + Charlie2a DNA MER1_type 2684 2860 -2 2323 162 18 30 chr1 178109264 178109703 -64554650 + Tigger2a DNA MER2_type 1 434 0 1972 139 7 0 chr1 178111317 178111612 -64552741 - AluSx SINE Alu -13 299 3 2099 103 14 3 chr1 178113313 178113604 -64550749 + AluSg SINE Alu 1 294 -16 2811 112 9 27 chr1 178114070 178114517 -64549836 - L1P LINE L1 -3723 2423 1985 7184 80 9 1 chr1 178114517 178116294 -64548059 + L1PA7 LINE L1 4340 6153 -1 252 86 0 0 chr1 178116309 178116344 -64548009 + (A)n Simple_repeat Simple_repeat 1 35 0 398 197 118 31 chr1 178116678 178116805 -64547548 - MIR SINE MIR -13 249 112 245 288 12 50 chr1 178117977 178118057 -64546296 - L2 LINE L2 0 3313 3237 1657 155 4 0 chr1 178118524 178118776 -64545577 - AluJb SINE Alu -59 253 1 709 242 79 16 chr1 178118868 178119058 -64545295 + MIR SINE MIR 12 213 -49 22 0 0 0 chr1 178119167 178119189 -64545164 + AT_rich Low_complexity Low_complexity 1 22 0 1916 143 7 10 chr1 178119519 178119827 -64544526 + AluJb SINE Alu 5 311 -1 656 126 17 8 chr1 178120401 178120512 -64543841 + AluJo/FLAM SINE Alu 1 115 -197 2271 112 0 0 chr1 178120512 178120816 -64543537 - AluSx SINE Alu -6 306 3 1613 185 13 7 chr1 178121113 178121421 -64542932 - AluJb SINE Alu -2 310 1 2181 106 7 0 chr1 178121619 178121920 -64542433 - AluSq SINE Alu -10 303 1 260 53 26 0 chr1 178123066 178123104 -64541249 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 2113 99 7 0 chr1 178123104 178123387 -64540966 - AluSc SINE Alu -24 285 1 278 323 30 10 chr1 178123601 178123700 -64540653 + MIR SINE MIR 106 206 -56 825 244 107 33 chr1 178123732 178123974 -64540379 - MIR SINE MIR -1 261 2 2260 93 0 3 chr1 178124430 178124730 -64539623 - AluSx SINE Alu -13 299 1 378 329 44 25 chr1 178124885 178125043 -64539310 + MIR SINE MIR 96 256 -6 745 295 206 13 chr1 178125071 178125656 -64538697 - L2 LINE L2 0 3313 2620 2849 190 35 6 chr1 178125743 178127563 -64536790 + L1MB5 LINE L1 4236 6174 0 204 158 26 0 chr1 178127615 178127653 -64536700 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 2097 114 0 7 chr1 178127655 178127952 -64536401 - AluSx SINE Alu -17 295 1 1634 166 17 17 chr1 178128440 178128735 -64535618 + AluJo SINE Alu 3 297 -15 449 350 133 0 chr1 178129092 178129318 -64535035 - MIR SINE MIR -6 256 1 310 202 64 73 chr1 178129634 178129743 -64534610 - L1MC4a LINE L1 -1886 5922 5815 1176 168 178 19 chr1 178129749 178130058 -64534295 - L1ME3A LINE L1 -5 6165 5808 6525 122 39 8 chr1 178130070 178131130 -64533223 - Tigger3b DNA MER2_type -139 1092 1 377 208 14 0 chr1 178131134 178131206 -64533147 - L1ME3A LINE L1 -448 5722 5650 2057 120 9 33 chr1 178131226 178131559 -64532794 + MER1B DNA MER1_type 1 325 -14 703 321 36 16 chr1 178131598 178131906 -64532447 - L1MC4a LINE L1 -1983 5825 5512 315 259 138 31 chr1 178133116 178133266 -64531087 - MIR3 SINE MIR -63 145 10 206 354 115 10 chr1 178133584 178133680 -64530673 - L2 LINE L2 -4 3309 3204 424 46 200 0 chr1 178133796 178133861 -64530492 - MADE1 DNA Mariner -2 78 1 1970 294 136 34 chr1 178134090 178134739 -64529614 - L2 LINE L2 -16 3297 2716 2158 109 0 7 chr1 178134739 178135042 -64529311 + AluSg SINE Alu 1 301 -9 1970 294 136 34 chr1 178135042 178135602 -64528751 - L2 LINE L2 -597 2716 1960 258 218 73 0 chr1 178136545 178136600 -64527753 - MER2 DNA MER2_type -19 326 268 1207 138 25 5 chr1 178136649 178136845 -64527508 - MER2 DNA MER2_type -144 201 2 420 143 0 0 chr1 178136845 178136915 -64527438 + (TA)n Simple_repeat Simple_repeat 2 71 0 1806 170 7 0 chr1 178137095 178137389 -64526964 - AluJb SINE Alu -16 296 1 29 28 0 0 chr1 178137479 178137515 -64526838 + AT_rich Low_complexity Low_complexity 1 36 0 309 181 83 14 chr1 178138162 178138234 -64526119 - HAL1 LINE L1 -1043 1464 1388 600 226 18 18 chr1 178138235 178138260 -64526093 - L1MA10 LINE L1 0 6334 6310 4422 210 73 43 chr1 178138260 178139678 -64524675 - L1ME1 LINE L1 -18 6131 4628 1990 122 28 0 chr1 178139678 178139965 -64524388 - AluSx SINE Alu -17 295 1 4422 210 73 43 chr1 178139965 178140663 -64523690 - L1ME1 LINE L1 -1521 4628 3953 437 204 61 0 chr1 178140642 178140740 -64523613 - L1ME1 LINE L1 -3317 2812 2709 * 21 36 0 0 chr1 178142820 178142848 -64521505 + AT_rich Low_complexity Low_complexity 1 28 0 2069 126 33 0 chr1 178143412 178143714 -64520639 + AluSx SINE Alu 1 312 0 2818 159 62 47 chr1 178144545 178145161 -64519192 + L1MB7 LINE L1 5541 6165 -19 481 254 124 57 chr1 178145417 178145592 -64518761 + MIR SINE MIR 33 226 -36 2228 87 3 52 chr1 178145592 178145902 -64518451 + AluSx SINE Alu 1 295 -17 481 254 124 57 chr1 178145902 178145935 -64518418 + MIR SINE MIR 226 255 -7 1423 338 36 14 chr1 178146348 178147010 -64517343 + ERVL LTR ERVL 1324 2000 -3764 1660 200 118 0 chr1 178147012 178147377 -64516976 - MLT1E3 LTR MaLR 0 624 217 1039 340 85 6 chr1 178147390 178147908 -64516445 + ERVL LTR ERVL 2019 2577 -3187 * 1322 229 73 33 chr1 178147881 178148279 -64516074 + ERVL LTR ERVL 4232 4645 -1119 1630 270 71 33 chr1 178148360 178148774 -64515579 + ERVL LTR ERVL 4763 5207 -557 1888 162 0 7 chr1 178148774 178149077 -64515276 + AluSx SINE Alu 1 301 -11 1630 270 71 33 chr1 178149077 178149236 -64515117 + ERVL LTR ERVL 5207 5358 -406 402 239 47 73 chr1 178149245 178149546 -64514807 - L1ME1 LINE L1 -5029 1090 798 942 183 18 0 chr1 178149773 178149937 -64514416 - MER119 DNA MER1_type -14 569 403 191 325 49 103 chr1 178150243 178150446 -64513907 + L2 LINE L2 2973 3164 -108 1538 217 16 99 chr1 178150495 178150904 -64513449 - L1MB8 LINE L1 -1 6177 5788 319 0 0 0 chr1 178150904 178150939 -64513414 - U2 snRNA snRNA -153 35 1 1538 217 16 99 chr1 178150939 178151052 -64513301 - L1MB8 LINE L1 -390 5788 5667 191 227 45 0 chr1 178151078 178151122 -64513231 + L2 LINE L2 3268 3313 0 2109 121 0 10 chr1 178151580 178151878 -64512475 + AluSg1 SINE Alu 1 295 -14 988 149 19 0 chr1 178151994 178152155 -64512198 - MER119 DNA MER1_type -14 569 406 23 0 0 0 chr1 178152260 178152283 -64512070 + AT_rich Low_complexity Low_complexity 1 23 0 338 230 0 71 chr1 178153226 178153296 -64511057 + MER112 DNA MER1_type 136 195 -65 1934 136 55 3 chr1 178153296 178153626 -64510727 + MER7A DNA MER2_type 1 345 -1 338 230 0 71 chr1 178153626 178153681 -64510672 + MER112 DNA MER1_type 195 252 -8 241 197 28 0 chr1 178153778 178153849 -64510504 + GA-rich Low_complexity Low_complexity 4 76 0 218 194 0 0 chr1 178154552 178154588 -64509765 + polypyrimidine Low_complexity Low_complexity 3 38 0 490 248 57 0 chr1 178155843 178155984 -64508369 - MER112 DNA MER1_type -13 247 99 1972 132 0 17 chr1 178156128 178156424 -64507929 + AluSx SINE Alu 18 308 -4 213 319 87 39 chr1 178156615 178156844 -64507509 + L2 LINE L2 1983 2222 -1092 2384 78 0 7 chr1 178156847 178157143 -64507210 + AluY SINE Alu 1 294 -17 207 254 16 32 chr1 178157196 178157259 -64507094 + L2 LINE L2 2902 2963 -309 23 0 0 0 chr1 178157376 178157399 -64506954 + AT_rich Low_complexity Low_complexity 1 23 0 249 305 185 58 chr1 178157597 178157821 -64506532 - L2 LINE L2 -2053 1261 1067 711 188 8 8 chr1 178157821 178157954 -64506399 + FLAM_C SINE Alu 1 133 0 249 305 185 58 chr1 178157954 178158438 -64505915 - L2 LINE L2 -2247 1067 463 25 83 0 0 chr1 178158801 178158861 -64505492 + AT_rich Low_complexity Low_complexity 1 60 0 1977 114 80 0 chr1 178159961 178160250 -64504103 + AluSx SINE Alu 1 312 0 459 209 145 51 chr1 178160627 178160902 -64503451 - Charlie8 DNA MER1_type -1009 1408 33 208 231 0 0 chr1 178161556 178161595 -64502758 + polypyrimidine Low_complexity Low_complexity 3 41 0 21 36 0 0 chr1 178161701 178161729 -64502624 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 178161874 178161899 -64502454 + AT_rich Low_complexity Low_complexity 1 25 0 2189 105 0 26 chr1 178162082 178162388 -64501965 + AluSx SINE Alu 1 298 -14 399 21 0 0 chr1 178162493 178162541 -64501812 + (CA)n Simple_repeat Simple_repeat 2 49 0 341 294 111 49 chr1 178162544 178162850 -64501503 + L1ME4a LINE L1 4623 4947 -1199 519 266 158 28 chr1 178162918 178163472 -64500881 + L1ME4a LINE L1 5080 5774 -347 2111 136 0 0 chr1 178163472 178163767 -64500586 - AluSx SINE Alu -17 295 1 519 266 158 28 chr1 178163767 178164043 -64500310 + L1ME4a LINE L1 5774 6013 -108 878 171 0 0 chr1 178164266 178164412 -64499941 - AluJb SINE Alu -10 302 157 309 297 109 0 chr1 178164564 178164665 -64499688 - MIR3 SINE MIR 0 208 97 644 188 72 40 chr1 178164782 178164977 -64499376 + MLT1B LTR MaLR 1 191 -183 267 140 0 0 chr1 178164993 178165043 -64499310 + (TC)n Simple_repeat Simple_repeat 1 50 0 822 221 74 5 chr1 178165047 178165237 -64499116 + MLT1B LTR MaLR 188 390 0 570 110 66 0 chr1 178165639 178165730 -64498623 + AluSg/x SINE Alu 196 292 -20 1058 45 0 0 chr1 178165736 178165868 -64498485 + L1PA4 LINE L1 6021 6152 -3 237 333 44 22 chr1 178166198 178166288 -64498065 + L2 LINE L2 3155 3246 -26 4298 146 55 46 chr1 178166382 178166757 -64497596 + L1MB7 LINE L1 4921 5291 -893 1784 70 0 0 chr1 178166757 178166971 -64497382 - AluY SINE Alu -15 296 83 4298 146 55 46 chr1 178166971 178167798 -64496555 + L1MB7 LINE L1 5291 6120 -64 246 62 0 0 chr1 178167810 178167842 -64496511 + (TCTCCC)n Simple_repeat Simple_repeat 3 34 0 1585 113 19 0 chr1 178167854 178168067 -64496286 - AluSq SINE Alu -96 217 1 268 59 98 0 chr1 178168068 178168119 -64496234 + L1MB7 LINE L1 6112 6167 -17 740 304 130 45 chr1 178168120 178168709 -64495644 - L2 LINE L2 0 3313 2688 867 188 4 132 chr1 178168828 178169078 -64495275 + MER20 DNA MER1_type 2 219 0 244 264 14 0 chr1 178169095 178169167 -64495186 + MER103 DNA DNA 82 154 -12 1772 160 13 19 chr1 178169256 178169563 -64494790 + AluJo SINE Alu 1 305 -7 21 0 0 0 chr1 178169706 178169727 -64494626 + AT_rich Low_complexity Low_complexity 1 21 0 454 292 36 36 chr1 178169978 178170115 -64494238 - L2 LINE L2 -2 3270 3134 405 306 43 19 chr1 178170153 178170400 -64493953 - L2 LINE L2 -528 2786 2489 364 257 95 0 chr1 178170399 178170504 -64493849 + MIR3 SINE MIR 65 179 -29 * 464 219 112 16 chr1 178170874 178171061 -64493292 - Charlie2 DNA MER1_type 0 2862 2658 830 194 178 0 chr1 178171212 178171454 -64492899 - Charlie2 DNA MER1_type -723 2139 1855 403 317 140 5 chr1 178171472 178171658 -64492695 - Charlie2 DNA MER1_type -2545 317 107 815 124 0 29 chr1 178222095 178222232 -64442121 - FLAM_C SINE Alu 0 133 1 1330 183 75 92 chr1 178222386 178222757 -64441596 + MLT1A1 LTR MaLR 1 365 0 2308 68 0 56 chr1 178222827 178223149 -64441204 + AluY SINE Alu 1 304 -7 4278 219 69 33 chr1 178224530 178224646 -64439707 + L1MC4a LINE L1 6163 6273 -1534 2165 137 22 22 chr1 178224646 178225010 -64439343 - THE1B LTR MaLR 0 364 1 4278 219 69 33 chr1 178225010 178226218 -64438135 + L1MC4a LINE L1 6273 7804 -3 414 348 56 52 chr1 178226350 178226620 -64437733 - L2 LINE L2 -2 3270 3000 457 227 67 47 chr1 178226866 178226961 -64437392 + L1MEd LINE L1 3 104 -6015 1067 239 75 36 chr1 178226961 178227321 -64437032 + MLT1A2 LTR MaLR 1 374 0 457 227 67 47 chr1 178227321 178227375 -64436978 + L1MEd LINE L1 104 155 -5964 5664 84 35 17 chr1 178227550 178228050 -64436303 + L1MA2 LINE L1 5449 5972 -332 258 32 0 0 chr1 178228050 178228081 -64436272 + (GA)n Simple_repeat Simple_repeat 1 31 0 5664 84 35 17 chr1 178228081 178228421 -64435932 + L1MA2 LINE L1 5972 6304 0 225 226 83 24 chr1 178228600 178228684 -64435669 + LTR67 LTR ERVL 458 546 -11 2471 61 0 0 chr1 178229390 178229684 -64434669 + AluY SINE Alu 1 294 -17 436 300 144 12 chr1 178229771 178230021 -64434332 - L1ME4a LINE L1 -147 5974 5692 1174 185 120 62 chr1 178231705 178232030 -64432323 - MER2 DNA MER2_type 0 344 1 420 258 246 6 chr1 178232246 178232448 -64431905 + MIR SINE MIR 2 247 -15 2531 69 0 0 chr1 178232449 178232754 -64431599 + AluY SINE Alu 1 305 -6 2118 137 0 3 chr1 178232764 178233071 -64431282 + AluJb SINE Alu 1 306 -6 13084 125 39 7 chr1 178233111 178235193 -64429160 - Tigger4(Zombi) DNA MER2_type 0 2731 582 271 104 26 217 chr1 178235199 178235249 -64429104 - L1MB3 LINE L1 -2 6178 6120 22227 29 1 2 chr1 178235249 178238716 -64425637 - L1PA4 LINE L1 0 6155 2690 759 21 115 0 chr1 178238716 178238812 -64425541 - U6 snRNA snRNA 0 107 1 2189 111 3 0 chr1 178238816 178239105 -64425248 - AluSx SINE Alu -20 292 3 271 104 26 217 chr1 178239105 178239163 -64425190 - L1MB3 LINE L1 -62 6118 6086 1253 141 25 37 chr1 178239168 178239386 -64424967 - L1MA4 LINE L1 -280 6020 5804 297 0 0 0 chr1 178239386 178239419 -64424934 + (TG)n Simple_repeat Simple_repeat 2 34 0 1253 141 25 37 chr1 178239419 178239442 -64424911 - L1MA4 LINE L1 -496 5804 5782 1418 100 0 100 chr1 178239452 178239712 -64424641 - Tigger4(Zombi) DNA MER2_type -2133 598 365 1585 166 23 46 chr1 178239720 178240027 -64424326 + AluJo SINE Alu 1 300 -12 896 243 94 12 chr1 178240030 178240359 -64423994 - Charlie7 DNA MER1_type -531 2081 1726 2825 197 32 43 chr1 178240362 178241246 -64423107 + L1M4 LINE L1 4634 5505 -669 1463 218 27 15 chr1 178241244 178241579 -64422774 - L1MC4 LINE L1 -430 7612 7274 * 263 157 0 180 chr1 178241570 178241659 -64422694 - L1MC4 LINE L1 -1177 6865 6793 * 1121 226 175 3 chr1 178242265 178242557 -64421796 - L1MC4 LINE L1 -1244 6798 6457 1855 165 0 3 chr1 178242772 178243081 -64421272 + AluJb SINE Alu 1 308 -4 265 220 3 23 chr1 178243169 178243255 -64421098 - L1MC5 LINE L1 -2 7913 7702 443 317 147 10 chr1 178243314 178243626 -64420727 - L2 LINE L2 -69 3244 2890 1724 164 38 0 chr1 178243964 178244251 -64420102 - AluJb SINE Alu -14 298 1 182 345 17 0 chr1 178244310 178244368 -64419985 - L2 LINE L2 -18 3295 3237 * 198 273 200 9 chr1 178244360 178244470 -64419883 - MIR SINE MIR -84 178 48 2101 217 51 47 chr1 178246288 178246997 -64417356 + L1M4 LINE L1 4157 4868 -1278 368 39 0 20 chr1 178247855 178247906 -64416447 + (TG)n Simple_repeat Simple_repeat 2 51 0 3744 176 62 16 chr1 178247906 178248309 -64416044 + MER63C DNA MER1_type 77 460 -600 1773 167 13 20 chr1 178248309 178248615 -64415738 - AluJo SINE Alu -6 306 3 3744 176 62 16 chr1 178248615 178248817 -64415536 + MER63C DNA MER1_type 460 651 -409 2462 77 6 0 chr1 178248817 178249128 -64415225 + AluSp SINE Alu 1 313 0 3744 176 62 16 chr1 178249128 178249337 -64415016 + MER63C DNA MER1_type 651 930 0 237 365 67 19 chr1 178249356 178249460 -64414893 - MIR SINE MIR -122 140 32 198 0 0 0 chr1 178249564 178249586 -64414767 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 3620 93 27 44 chr1 178250846 178251434 -64412919 + L1PB3 LINE L1 5577 6154 0 694 127 64 0 chr1 178251480 178251590 -64412763 + MLT1D LTR MaLR 343 459 -46 226 322 20 34 chr1 178251600 178251746 -64412607 + L1ME1 LINE L1 4 147 -6393 234 176 0 0 chr1 178252163 178252214 -64412139 + CT-rich Low_complexity Low_complexity 1 51 0 3822 232 64 44 chr1 178252500 178252583 -64411770 + L1ME1 LINE L1 917 997 -5543 2208 115 0 7 chr1 178252583 178252887 -64411466 + AluSg SINE Alu 1 302 -8 3822 232 64 44 chr1 178252887 178255747 -64408606 + L1ME1 LINE L1 997 3797 -2743 2212 123 0 3 chr1 178255747 178256048 -64408305 + AluSx SINE Alu 1 300 -12 3822 232 64 44 chr1 178256048 178256068 -64408285 + L1ME1 LINE L1 3797 3815 -2725 2101 120 0 7 chr1 178256068 178256360 -64407993 + AluSx SINE Alu 1 290 -22 3822 232 64 44 chr1 178256360 178256457 -64407896 + L1ME1 LINE L1 3815 4010 -2530 1513 197 27 67 chr1 178256460 178256835 -64407518 + MLT1A1 LTR MaLR 4 363 -2 5213 211 65 48 chr1 178256837 178257522 -64406831 + L1ME1 LINE L1 4006 4678 -1899 1646 148 110 0 chr1 178257522 178257785 -64406568 + AluSx SINE Alu 1 292 -20 5213 211 65 48 chr1 178257785 178258917 -64405436 + L1ME1 LINE L1 4678 5834 -743 528 141 82 30 chr1 178258913 178259048 -64405305 + L1MB7 LINE L1 6043 6184 0 * 2721 237 41 14 chr1 178259046 178259223 -64405130 + L1ME1 LINE L1 5814 5985 -575 2171 132 3 0 chr1 178259223 178259534 -64404819 + AluSx SINE Alu 1 312 0 2721 237 41 14 chr1 178259534 178260061 -64404292 + L1ME1 LINE L1 5985 6537 -23 822 181 78 0 chr1 178260555 178260721 -64403632 + LTR47A LTR ERVL 274 452 0 195 42 0 0 chr1 178260756 178260780 -64403573 + (CCCCAA)n Simple_repeat Simple_repeat 6 29 0 221 260 0 0 chr1 178260880 178260930 -64403423 + MIR SINE MIR 183 232 -30 290 319 24 66 chr1 178260989 178261155 -64403198 + MIR3 SINE MIR 36 194 -14 447 371 98 46 chr1 178261257 178261605 -64402748 + L2 LINE L2 2900 3265 -7 260 307 79 18 chr1 178261603 178261717 -64402636 + L3 LINE CR1 1417 1537 -40 * 265 125 18 71 chr1 178262557 178262613 -64401740 - MLT1C LTR MaLR -357 110 58 250 244 30 101 chr1 178262617 178262785 -64401568 + L2 LINE L2 1899 2054 -1260 2779 119 25 25 chr1 178262912 178263356 -64400997 + LOR1a LTR ERV1 54 497 0 200 147 0 0 chr1 178263359 178263393 -64400960 + L2 LINE L2 2327 2360 -954 851 279 19 31 chr1 178263404 178263662 -64400691 + MIR SINE MIR 8 262 0 216 388 94 14 chr1 178263681 178263967 -64400386 + L2 LINE L2 2364 2672 -642 3977 131 41 65 chr1 178264201 178265005 -64399348 + LTR1 LTR ERV1 1 785 0 2340 105 0 6 chr1 178265309 178265623 -64398730 - AluSx SINE Alu 0 312 1 1345 160 77 28 chr1 178265659 178265897 -64398456 + MER33 DNA MER1_type 1 245 -2340 1996 164 134 7 chr1 178265897 178266306 -64398047 + LOR1b LTR ERV1 1 461 0 1345 160 77 28 chr1 178266306 178266388 -64397965 + MER33 DNA MER1_type 245 322 -2 1511 174 4 15 chr1 178266608 178266873 -64397480 + AluJo SINE Alu 42 303 -9 5447 130 23 44 chr1 178267188 178268666 -64395687 + L1PA15 LINE L1 4699 6143 -22 363 358 8 0 chr1 178268759 178268879 -64395474 + MIR SINE MIR 28 148 -114 295 318 182 0 chr1 178268936 178269068 -64395285 + MER5A DNA MER1_type 34 189 0 3705 76 20 80 chr1 178269420 178269884 -64394469 + MER41A LTR ERV1 1 424 -130 2099 96 4 0 chr1 178269884 178270155 -64394198 - AluSq SINE Alu -25 288 17 3705 76 20 80 chr1 178270155 178270279 -64394074 + MER41A LTR ERV1 424 554 0 1334 148 181 57 chr1 178270327 178270371 -64393982 - Charlie1b DNA MER1_type -2327 434 397 2203 68 41 3 chr1 178270371 178270664 -64393689 + AluY SINE Alu 1 304 -7 1334 148 181 57 chr1 178270664 178271005 -64393348 - Charlie1b DNA MER1_type -2364 397 1 724 61 0 96 chr1 178271017 178271132 -64393221 - LTR12 LTR ERV1 -129 585 482 334 225 11 0 chr1 178271135 178271224 -64393129 - LTR30 LTR ERV1 -80 642 553 1413 97 153 1 chr1 178271224 178271473 -64392880 - LTR12 LTR ERV1 -406 2032 57 257 231 0 0 chr1 178271473 178271525 -64392828 - LTR30 LTR ERV1 -670 52 1 781 310 65 0 chr1 178271530 178271762 -64392591 - MIR SINE MIR -7 255 9 22 35 0 0 chr1 178272685 178272714 -64391639 + AT_rich Low_complexity Low_complexity 1 29 0 828 216 56 52 chr1 178272999 178273267 -64391086 + ORSL DNA AcHobo 7 275 0 216 256 37 85 chr1 178273267 178273349 -64391004 + L2 LINE L2 3006 3083 -189 24 53 0 0 chr1 178274290 178274328 -64390025 + AT_rich Low_complexity Low_complexity 1 38 0 1448 83 0 0 chr1 178275140 178275321 -64389032 + AluSg SINE Alu 1 181 -129 605 172 0 0 chr1 178275321 178275420 -64388933 - AluJ SINE Alu -85 227 129 693 218 0 0 chr1 178275420 178275553 -64388800 - AluJ SINE Alu -169 133 1 1959 144 57 43 chr1 178275555 178275923 -64388430 - Tigger2a DNA MER2_type -61 373 1 1859 137 53 3 chr1 178276296 178276581 -64387772 - AluSq SINE Alu -14 299 1 988 201 34 0 chr1 178276766 178276945 -64387408 - MER5A DNA MER1_type -3 186 2 22 0 0 0 chr1 178276952 178276974 -64387379 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 178277302 178277330 -64387023 + AT_rich Low_complexity Low_complexity 1 28 0 857 139 0 13 chr1 178277783 178277941 -64386412 + L1MA5 LINE L1 6145 6300 0 249 289 0 0 chr1 178278051 178278127 -64386226 - L1MC5 LINE L1 -66 7895 7820 597 249 16 70 chr1 178278507 178278567 -64385786 - MER5B DNA MER1_type -3 175 113 2357 91 0 0 chr1 178278567 178278864 -64385489 + AluSg SINE Alu 1 297 -13 597 249 16 70 chr1 178278864 178278988 -64385365 - MER5B DNA MER1_type -65 113 1 465 321 227 23 chr1 178278988 178279595 -64384758 - L3 LINE CR1 -44 1533 803 629 62 0 0 chr1 178279602 178279682 -64384671 + MADE1 DNA Mariner 1 80 0 625 217 93 0 chr1 178279722 178279851 -64384502 + MER63A DNA MER1_type 69 209 -1 262 307 29 33 chr1 178279906 178280038 -64384315 - MER5B DNA MER1_type -45 133 12 531 329 79 28 chr1 178280039 178280241 -64384112 - L3 LINE CR1 -993 584 365 2362 106 0 0 chr1 178280241 178280544 -64383809 + AluSq SINE Alu 1 303 -10 531 329 79 28 chr1 178280544 178280593 -64383760 - L3 LINE CR1 -1212 365 320 343 264 45 7 chr1 178280958 178281113 -64383240 + L1M4 LINE L1 3060 3220 -2926 423 172 70 10 chr1 178281153 178281397 -64382956 + AluJo SINE Alu 9 300 -12 183 319 44 52 chr1 178281413 178281548 -64382805 - L3 LINE CR1 -39 1538 1405 2267 110 13 0 chr1 178281561 178281870 -64382483 + AluSp SINE Alu 1 313 0 389 359 77 15 chr1 178281968 178282163 -64382190 + MIR3 SINE MIR 2 208 0 330 337 87 68 chr1 178282239 178282619 -64381734 - L3 LINE CR1 -482 1095 709 253 176 69 39 chr1 178282727 178282829 -64381524 + L1ME2 LINE L1 3063 3167 -2979 1656 190 0 0 chr1 178282829 178283103 -64381250 + AluJo SINE Alu 1 274 -38 482 74 0 12 chr1 178283103 178283184 -64381169 + (GA)n Simple_repeat Simple_repeat 1 80 0 2310 228 57 35 chr1 178283305 178284660 -64379693 + L1ME2 LINE L1 3264 4765 -1381 2045 121 7 0 chr1 178284688 178285007 -64379346 - AluSx SINE Alu 0 322 2 2707 160 73 14 chr1 178285026 178285544 -64378809 + MER44D DNA MER2_type 2 605 0 1681 183 103 46 chr1 178285546 178285902 -64378451 + L1ME2 LINE L1 4869 5203 -963 10151 60 9 57 chr1 178285902 178287330 -64377023 + SVA Other Other 25 1383 -3 1681 183 103 46 chr1 178287330 178287342 -64377011 + L1ME2 LINE L1 5203 5213 -953 2098 110 40 7 chr1 178287342 178287642 -64376711 + AluSg SINE Alu 1 310 0 1681 183 103 46 chr1 178287642 178287933 -64376420 + L1ME2 LINE L1 5213 5570 -596 457 234 52 0 chr1 178287930 178288082 -64376271 + L1ME2 LINE L1 5853 6013 -149 * 863 188 0 0 chr1 178288099 178288264 -64376089 + L1MA10 LINE L1 6169 6333 -1 2210 72 0 14 chr1 178288318 178288597 -64375756 + AluSx SINE Alu 1 275 -37 24 0 0 0 chr1 178288600 178288624 -64375729 + GC_rich Low_complexity Low_complexity 1 24 0 808 121 21 0 chr1 178289038 178289178 -64375175 - L1MB4 LINE L1 -3 6177 6035 1631 92 22 0 chr1 178290104 178290332 -64374021 + L1PA13 LINE L1 5912 6144 -19 2121 112 3 30 chr1 178290616 178290921 -64373432 + AluSg SINE Alu 1 297 -13 317 141 200 0 chr1 178290923 178291008 -64373345 + L1MB5 LINE L1 6056 6157 -17 205 336 65 9 chr1 178291531 178291638 -64372715 + L2 LINE L2 2943 3055 -217 1886 192 63 114 chr1 178292533 178293256 -64371097 + L1MC5 LINE L1 6620 7256 -705 288 0 0 0 chr1 178293256 178293288 -64371065 + (TA)n Simple_repeat Simple_repeat 2 33 0 1886 192 63 114 chr1 178293288 178293455 -64370898 + L1MC5 LINE L1 7256 7430 -531 665 251 89 0 chr1 178293579 178293758 -64370595 + MER3 DNA MER1_type 2 196 -13 3774 247 62 26 chr1 178293902 178295062 -64369291 + L1M1 LINE L1 875 2076 -4773 * 15582 21 45 0 chr1 178295051 178298320 -64366033 + L1HS LINE L1 2606 6155 0 14631 189 45 18 chr1 178298318 178301302 -64363051 + L1M1 LINE L1 2134 5037 -1968 * 207 0 0 0 chr1 178301302 178301325 -64363028 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 396 0 0 0 chr1 178301324 178301368 -64362985 + (CA)n Simple_repeat Simple_repeat 2 45 0 14631 189 45 18 chr1 178301325 178302089 -64362264 + L1M1 LINE L1 5037 5896 -1109 303 28 0 0 chr1 178302089 178302125 -64362228 + (CA)n Simple_repeat Simple_repeat 1 36 0 14631 189 45 18 chr1 178302125 178302729 -64361624 + L1M1 LINE L1 5896 6482 -523 279 0 0 0 chr1 178302729 178302760 -64361593 + (TG)n Simple_repeat Simple_repeat 1 31 0 1672 193 3 7 chr1 178303275 178303581 -64360772 + AluJo SINE Alu 1 305 -7 1159 201 142 31 chr1 178303632 178304025 -64360328 + MLT1C LTR MaLR 24 467 0 1916 156 0 0 chr1 178307364 178307652 -64356701 - AluSx SINE Alu -16 296 9 1487 133 0 0 chr1 178307660 178307894 -64356459 - L1MC3 LINE L1 -7 7778 7545 2049 80 0 112 chr1 178309146 178309485 -64354868 + AluSx SINE Alu 1 301 -11 23586 23 12 0 chr1 178310932 178314560 -64349793 + L1PA4 LINE L1 2535 6152 -3 294 29 0 0 chr1 178314681 178314716 -64349637 + (CA)n Simple_repeat Simple_repeat 2 36 0 34 42 0 0 chr1 178314954 178315002 -64349351 + AT_rich Low_complexity Low_complexity 1 48 0 766 118 7 22 chr1 178315551 178315687 -64348666 - L1MB2 LINE L1 -2 6169 6036 805 184 68 25 chr1 178315712 178315875 -64348478 + AluSg/x SINE Alu 135 304 -8 21 0 0 0 chr1 178315875 178315896 -64348457 + AT_rich Low_complexity Low_complexity 1 21 0 2331 55 0 4 chr1 178315896 178316171 -64348182 - AluY SINE Alu -37 274 1 6258 118 45 21 chr1 178316176 178316873 -64347480 - L1MA5A LINE L1 0 6297 5619 2406 72 7 0 chr1 178316873 178317177 -64347176 + AluSc SINE Alu 1 306 -3 6258 118 45 21 chr1 178317177 178317299 -64347054 - L1MA5A LINE L1 -678 5619 5501 228 86 0 0 chr1 178317299 178317334 -64347019 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6258 118 45 21 chr1 178317334 178317730 -64346623 - L1MA5A LINE L1 -796 5501 5054 189 0 0 0 chr1 178317803 178317824 -64346529 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 201 226 0 38 chr1 178317977 178318030 -64346323 + L2 LINE L2 2190 2240 -1074 806 188 87 43 chr1 178318039 178318246 -64346107 - MER20 DNA MER1_type 0 219 4 2540 64 0 0 chr1 178318310 178318621 -64345732 - AluY SINE Alu 0 311 1 2328 239 104 45 chr1 178319050 178319587 -64344766 + MER21B LTR ERV1 19 613 -250 3775 130 15 97 chr1 178319587 178320340 -64344013 + LTR8 LTR ERV1 1 691 0 2328 239 104 45 chr1 178320340 178320543 -64343810 + MER21B LTR ERV1 613 803 -60 288 203 34 0 chr1 178321245 178321304 -64343049 + L2 LINE L2 3245 3305 -8 3208 90 24 2 chr1 178321997 178322452 -64341901 + MER4C LTR ERV1 1 465 0 621 244 0 8 chr1 178322842 178322973 -64341380 + FLAM_A SINE Alu 1 130 -3 2229 102 0 0 chr1 178322976 178323279 -64341074 + AluSx SINE Alu 1 303 -9 512 209 24 157 chr1 178323295 178323505 -64340848 + MIR SINE MIR 79 260 -2 2033 153 34 3 chr1 178323720 178324047 -64340306 - MER1B DNA MER1_type 0 337 1 26 30 0 0 chr1 178324725 178324758 -64339595 + AT_rich Low_complexity Low_complexity 1 33 0 270 111 0 0 chr1 178325647 178325683 -64338670 + Alu SINE Alu 1 36 -266 1953 130 36 0 chr1 178325722 178325999 -64338354 + AluSg SINE Alu 1 287 -23 277 293 49 0 chr1 178326007 178326089 -64338264 - L2 LINE L2 -33 3280 3195 8287 195 68 40 chr1 178326613 178327557 -64336796 + L1M4c LINE L1 1571 2487 -3895 1864 123 97 0 chr1 178327557 178327866 -64336487 + MER44D DNA MER2_type 1 609 0 8287 195 68 40 chr1 178327866 178327880 -64336473 + L1M4c LINE L1 2487 2499 -3883 1894 79 87 4 chr1 178327880 178328134 -64336219 + AluSx SINE Alu 8 282 -30 219 88 0 0 chr1 178328138 178328172 -64336181 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8287 195 68 40 chr1 178328172 178328426 -64335927 + L1M4c LINE L1 2501 2746 -3636 2397 87 3 0 chr1 178328426 178328725 -64335628 - AluSq SINE Alu -11 302 3 8287 195 68 40 chr1 178328725 178329106 -64335247 + L1M4c LINE L1 2746 3115 -3267 2218 134 0 0 chr1 178329106 178329411 -64334942 + AluSx SINE Alu 1 305 -7 8287 195 68 40 chr1 178329411 178330324 -64334029 + L1M4c LINE L1 3115 4001 -2381 1655 181 17 7 chr1 178330324 178330616 -64333737 + AluJb SINE Alu 3 297 -15 8287 195 68 40 chr1 178330616 178331578 -64332775 + L1M4c LINE L1 4001 5241 -1141 2824 167 47 14 chr1 178331578 178332070 -64332283 + L1MA3 LINE L1 10 517 -7048 2031 166 9 23 chr1 178332070 178332147 -64332206 + MER1B DNA MER1_type 1 78 -2634 1807 133 45 48 chr1 178332147 178332523 -64331830 + THE1C LTR MaLR 1 375 0 2031 166 9 23 chr1 178332523 178332789 -64331564 + MER1B DNA MER1_type 78 339 0 18861 137 31 56 chr1 178332789 178335634 -64328719 + L1MA3 LINE L1 510 3425 -4298 2148 122 0 16 chr1 178335634 178335945 -64328408 - AluSx SINE Alu -4 308 3 18861 137 31 56 chr1 178335945 178336015 -64328338 + L1MA3 LINE L1 3425 3495 -4228 387 0 0 0 chr1 178336015 178336058 -64328295 + (CA)n Simple_repeat Simple_repeat 1 43 0 18861 137 31 56 chr1 178336058 178337718 -64326635 + L1MA3 LINE L1 3495 5195 -2528 1641 99 0 14 chr1 178337718 178337941 -64326412 + AluSg SINE Alu 1 220 -90 18861 137 31 56 chr1 178337941 178338401 -64325952 + L1MA3 LINE L1 5195 5665 -2058 2223 59 0 21 chr1 178338401 178338718 -64325635 + AluY SINE Alu 1 311 0 18861 137 31 56 chr1 178338718 178340575 -64323778 + L1MA3 LINE L1 5665 7221 -502 675 98 65 0 chr1 178340575 178340963 -64323390 + (TA)n Simple_repeat Simple_repeat 1 413 0 2986 128 40 0 chr1 178340964 178341465 -64322888 + L1MA3 LINE L1 7204 7724 0 619 206 88 21 chr1 178341521 178341715 -64322638 + L1MB3 LINE L1 4980 5186 -960 1044 174 0 0 chr1 178341716 178341883 -64322470 + AluJb SINE Alu 134 300 -12 4134 148 64 54 chr1 178341892 178342884 -64321469 + L1MB3 LINE L1 5178 6176 -7 264 335 75 12 chr1 178342904 178343065 -64321288 - L2 LINE L2 -1308 2006 1836 352 343 105 0 chr1 178343120 178343263 -64321090 - MIR SINE MIR 0 262 105 2016 160 71 24 chr1 178343271 178343764 -64320589 + MER44D DNA MER2_type 1 605 0 1991 206 32 19 chr1 178344091 178344524 -64319829 + MLT1F LTR MaLR 104 542 0 2209 104 0 7 chr1 178344977 178345274 -64319079 - AluSx SINE Alu -17 295 1 681 172 58 40 chr1 178345678 178345852 -64318501 - MER104 DNA MER2_type -3 177 1 2091 87 48 14 chr1 178345890 178346179 -64318174 + AluSq SINE Alu 3 301 -12 388 288 96 23 chr1 178346344 178346521 -64317832 - MIR SINE MIR -2 260 71 1009 171 6 0 chr1 178346883 178347047 -64317306 + FRAM SINE Alu 1 164 -12 761 270 141 58 chr1 178347069 178347643 -64316710 + HAL1 LINE L1 4 625 -1882 2393 70 3 22 chr1 178347825 178348140 -64316213 - AluY SINE Alu -2 309 1 2119 129 0 3 chr1 178348476 178348771 -64315582 + AluSx SINE Alu 1 294 -18 302 287 0 77 chr1 178348772 178348915 -64315438 - MER5A DNA MER1_type -56 133 2 210 171 0 0 chr1 178349044 178349085 -64315268 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 700 222 22 22 chr1 178349158 178349343 -64315010 - MER3 DNA MER1_type -15 194 10 2188 113 0 13 chr1 178349358 178349667 -64314686 - AluSx SINE Alu -7 305 1 1077 144 48 58 chr1 178349800 178350008 -64314345 + MER7C DNA MER2_type 2 207 -395 * 19617 91 18 3 chr1 178350004 178352605 -64311748 + Charlie3 DNA MER1_type 68 2706 -4 205 261 174 11 chr1 178352622 178352714 -64311639 - MIR SINE MIR -49 213 107 508 261 83 17 chr1 178353544 178353724 -64310629 + MIR SINE MIR 10 201 -61 210 153 102 68 chr1 178353718 178353777 -64310576 - L2 LINE L2 -4 3268 3208 * 212 298 0 0 chr1 178353786 178353833 -64310520 + L2 LINE L2 3210 3256 -16 191 250 0 23 chr1 178353800 178353844 -64310509 + MIR SINE MIR 220 262 0 * 839 216 11 6 chr1 178353848 178354024 -64310329 - MER104 DNA MER2_type -3 177 1 518 228 205 58 chr1 178354602 178354826 -64309527 + MIR SINE MIR 6 262 0 24 0 0 0 chr1 178354842 178354866 -64309487 + AT_rich Low_complexity Low_complexity 1 24 0 389 313 104 8 chr1 178355436 178355570 -64308783 + MIR3 SINE MIR 41 187 -21 1213 167 33 9 chr1 178356000 178356215 -64308138 - MIR SINE MIR -13 249 30 348 281 130 20 chr1 178356275 178356421 -64307932 + MIR3 SINE MIR 47 208 0 289 269 259 20 chr1 178356791 178356992 -64307361 + MIR SINE MIR 1 249 -13 626 308 66 18 chr1 178357048 178357275 -64307078 + MIR SINE MIR 19 256 -6 418 165 216 0 chr1 178357490 178357587 -64306766 + Charlie1 DNA MER1_type 2643 2760 -1 2140 106 32 0 chr1 178357985 178358269 -64306084 - AluSx SINE Alu -19 293 1 691 196 97 121 chr1 178358921 178359344 -64305009 - Charlie7 DNA MER1_type -8 2604 2192 1681 230 112 24 chr1 178359360 178359430 -64304923 - Charlie7 DNA MER1_type -1953 659 597 2212 117 0 0 chr1 178359430 178359730 -64304623 + AluSx SINE Alu 1 300 -12 1681 230 112 24 chr1 178359730 178360194 -64304159 - Charlie7 DNA MER1_type -2015 597 78 2421 86 0 16 chr1 178360206 178360520 -64303833 - AluSx SINE Alu -3 309 1 926 188 0 0 chr1 178360574 178360739 -64303614 - L1MA10 LINE L1 -1 6333 6169 471 236 50 7 chr1 178360749 178360908 -64303445 - L1ME2 LINE L1 -169 5995 5853 * 1115 190 39 81 chr1 178360905 178361196 -64303157 - L1ME2 LINE L1 -596 5570 5268 2121 110 40 7 chr1 178361196 178361496 -64302857 - AluSg SINE Alu 0 310 1 1115 190 39 81 chr1 178361496 178361508 -64302845 - L1ME2 LINE L1 -898 5268 5257 10277 53 11 59 chr1 178361508 178362935 -64301418 - SVA Other Other -3 1383 25 1115 190 39 81 chr1 178362935 178362992 -64301361 - L1ME2 LINE L1 -909 5257 5221 2343 101 0 7 chr1 178363201 178363509 -64300844 - AluSc SINE Alu -3 306 1 181 237 0 0 chr1 178364392 178364430 -64299923 - L3 LINE CR1 -2 1575 1538 402 277 79 0 chr1 178364588 178364689 -64299664 + MIR3 SINE MIR 91 199 -9 24 32 0 0 chr1 178365172 178365203 -64299150 + AT_rich Low_complexity Low_complexity 1 31 0 192 362 52 9 chr1 178365271 178365387 -64298966 - MIR3 SINE MIR -9 199 79 28 29 0 0 chr1 178365419 178365454 -64298899 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr1 178367732 178367757 -64296596 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 178368159 178368181 -64296172 + GC_rich Low_complexity Low_complexity 1 22 0 203 298 0 0 chr1 178368656 178368703 -64295650 + L2 LINE L2 3259 3305 -8 273 247 65 43 chr1 178369084 178369169 -64295184 - MIR SINE MIR 0 262 173 1527 163 27 31 chr1 178369169 178369463 -64294890 - AluJo SINE Alu -19 293 1 2166 112 0 0 chr1 178370215 178370500 -64293853 + AluSx SINE Alu 2 286 -26 2122 120 0 29 chr1 178370793 178371102 -64293251 + AluSx SINE Alu 1 300 -12 251 269 192 47 chr1 178371320 178371361 -64292992 + L2 LINE L2 3004 3038 -234 2749 124 3 3 chr1 178371361 178371725 -64292628 + THE1B LTR MaLR 1 364 0 251 269 192 47 chr1 178371725 178371917 -64292436 + L2 LINE L2 3038 3271 -1 730 293 18 5 chr1 178372101 178372323 -64292030 + MIR SINE MIR 3 227 -35 1108 246 11 15 chr1 178372415 178372675 -64291678 - MIR SINE MIR -2 260 2 606 313 158 22 chr1 178372718 178373270 -64291083 - L2 LINE L2 -840 2474 1848 657 152 0 0 chr1 178373713 178373812 -64290541 - L1M3 LINE L1 -495 5685 5587 1788 267 44 19 chr1 178373864 178373910 -64290443 - L2 LINE L2 -630 2684 2641 2062 198 16 65 chr1 178373910 178374401 -64289952 - MLT1C LTR MaLR 0 467 1 1788 267 44 19 chr1 178374401 178374874 -64289479 - L2 LINE L2 -673 2641 2152 558 167 0 0 chr1 178374877 178374955 -64289398 + AluJ/FLAM SINE Alu 3 80 -232 270 212 91 0 chr1 178374957 178375023 -64289330 - L2 LINE L2 -1153 2161 2090 475 315 51 5 chr1 178375028 178375244 -64289109 - L2 LINE L2 -1480 1834 1609 246 247 82 0 chr1 178375316 178375401 -64288952 + HAL1b LINE L1 1233 1324 -24 2208 129 3 0 chr1 178375547 178375857 -64288496 + AluSx SINE Alu 1 311 -1 250 189 19 0 chr1 178376435 178376488 -64287865 - MIR SINE MIR -108 154 101 1856 123 33 43 chr1 178376758 178377060 -64287293 + AluSx SINE Alu 1 299 -13 289 316 0 0 chr1 178377218 178377313 -64287040 + LTR67 LTR ERVL 458 552 -5 2035 288 72 40 chr1 178377363 178378208 -64286145 + ERVL LTR ERVL 4069 4940 -824 748 261 35 18 chr1 178378200 178378426 -64285927 + ERVL LTR ERVL 5189 5418 -346 * 274 307 44 0 chr1 178378621 178378735 -64285618 + LTR67 LTR ERVL 432 550 -7 225 307 80 13 chr1 178379038 178379113 -64285240 + L2 LINE L2 3160 3239 -33 2896 224 56 40 chr1 178379198 178379944 -64284409 - MSTD-int LTR MaLR -976 759 2 2022 189 52 13 chr1 178379946 178380327 -64284026 - MSTD LTR MaLR 0 396 1 332 319 102 84 chr1 178380346 178380446 -64283907 + L2 LINE L2 2811 2908 -364 1733 182 7 20 chr1 178380446 178380748 -64283605 - AluJo SINE Alu -14 298 1 332 319 102 84 chr1 178380748 178381099 -64283254 + L2 LINE L2 2908 3270 -2 2211 193 44 20 chr1 178382385 178382841 -64281512 + MLT1C LTR MaLR 1 467 0 375 171 0 13 chr1 178383054 178383130 -64281223 + MIR SINE MIR 183 257 -5 423 311 115 28 chr1 178383165 178383522 -64280831 + L2 LINE L2 1130 1517 -1797 257 319 44 66 chr1 178383545 178383727 -64280626 + L2 LINE L2 2457 2634 -680 587 208 89 6 chr1 178383938 178384106 -64280247 - MIR SINE MIR -60 202 21 22 0 0 0 chr1 178384270 178384292 -64280061 + AT_rich Low_complexity Low_complexity 1 22 0 489 311 8 0 chr1 178384293 178384425 -64279928 + L2 LINE L2 3180 3312 -1 194 350 0 0 chr1 178384462 178384522 -64279831 + L2 LINE L2 3201 3260 -12 187 374 139 0 chr1 178386305 178386420 -64277933 - L2 LINE L2 -3 3269 3139 2233 108 0 16 chr1 178386577 178386883 -64277470 + AluSx SINE Alu 1 301 -11 2015 111 4 0 chr1 178386892 178387162 -64277191 + AluSq SINE Alu 23 293 -20 22 0 0 0 chr1 178387209 178387231 -64277122 + AT_rich Low_complexity Low_complexity 1 22 0 1631 127 25 79 chr1 178389096 178389411 -64274942 + AluJb SINE Alu 1 298 -14 911 293 8 8 chr1 178390287 178390546 -64273807 + MLT1I LTR MaLR 17 275 -134 363 220 23 102 chr1 178390680 178390769 -64273584 + L1MC/D LINE L1 5314 5384 -2424 2118 99 10 10 chr1 178390769 178391063 -64273290 + AluY SINE Alu 1 294 -17 363 220 23 102 chr1 178391063 178391150 -64273203 + L1MC/D LINE L1 5384 5476 -2332 813 128 83 15 chr1 178391168 178391301 -64273052 + FRAM SINE Alu 23 164 -12 234 256 218 0 chr1 178391306 178391384 -64272969 + L1MC/D LINE L1 5483 5577 -544 1256 102 0 0 chr1 178391392 178391558 -64272795 - AluSg/x SINE Alu -13 299 134 2278 108 3 0 chr1 178391558 178391854 -64272499 - AluSx SINE Alu -13 299 3 21 0 0 0 chr1 178391861 178391882 -64272471 + AT_rich Low_complexity Low_complexity 1 21 0 334 249 254 0 chr1 178391936 178392101 -64272252 - MIR SINE MIR 0 262 56 333 266 42 14 chr1 178392141 178392284 -64272069 + L1MC/D LINE L1 5678 5824 -1984 * 2122 156 32 10 chr1 178392257 178392661 -64271692 + L1MB7 LINE L1 5617 6029 -155 2528 186 8 47 chr1 178392662 178393156 -64271197 + MLT2B2 LTR ERVL 1 475 -40 348 130 0 0 chr1 178393201 178393255 -64271098 + MLT2B2 LTR ERVL 466 519 -1 680 176 81 7 chr1 178393255 178393403 -64270950 + L1MB7 LINE L1 6026 6184 0 252 314 23 12 chr1 178393787 178393873 -64270480 + MIR SINE MIR 62 148 -60 249 319 302 6 chr1 178394689 178394858 -64269495 + MIR SINE MIR 20 238 -24 545 179 9 19 chr1 178394990 178395096 -64269257 + MER45 DNA AcHobo 1477 1581 0 1647 148 8 0 chr1 178395398 178395655 -64268698 - AluJo SINE Alu -15 297 39 198 71 0 0 chr1 178395761 178395789 -64268564 + (TC)n Simple_repeat Simple_repeat 2 29 0 1904 146 3 3 chr1 178397240 178397541 -64266812 + AluSg SINE Alu 2 302 -8 220 312 89 25 chr1 178398576 178398733 -64265620 + L2 LINE L2 1748 1914 -1400 263 259 35 0 chr1 178399585 178399670 -64264683 - L2 LINE L2 -189 3083 2996 227 163 50 0 chr1 178399835 178399915 -64264438 + CT-rich Low_complexity Low_complexity 1 84 0 456 331 24 36 chr1 178399980 178400228 -64264125 - MIR SINE MIR -16 246 2 21 71 0 0 chr1 178400427 178400469 -64263884 + AT_rich Low_complexity Low_complexity 1 42 0 245 303 92 31 chr1 178400717 178400926 -64263427 - L1ME4a LINE L1 -17 6104 5878 189 0 0 0 chr1 178400926 178400947 -64263406 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 245 303 92 31 chr1 178400947 178400965 -64263388 - L1ME4a LINE L1 -243 5878 5863 689 215 0 7 chr1 178402397 178402532 -64261821 - MER94 DNA DNA 0 134 1 189 0 0 0 chr1 178402692 178402713 -64261640 + (CA)n Simple_repeat Simple_repeat 2 22 0 383 250 128 26 chr1 178402748 178402904 -64261449 + L1MC4a LINE L1 5724 5895 -1913 2231 109 0 10 chr1 178403256 178403550 -64260803 - AluSx SINE Alu -21 291 1 567 81 12 12 chr1 178403625 178403711 -64260642 + AluSg1 SINE Alu 2 87 -222 304 77 0 19 chr1 178403811 178403863 -64260490 + Alu SINE Alu 251 301 0 2276 69 0 56 chr1 178403985 178404305 -64260048 - AluY SINE Alu -9 302 1 240 167 37 0 chr1 178404496 178404550 -64259803 - L2 LINE L2 -4 3309 3254 226 329 69 73 chr1 178404544 178404820 -64259533 - L2 LINE L2 -205 3067 2794 * 834 271 111 73 chr1 178404860 178404953 -64259400 + MLT1L LTR MaLR 33 121 -494 1987 210 5 25 chr1 178404953 178405357 -64258996 - MSTD LTR MaLR 0 396 1 834 271 111 73 chr1 178405357 178405661 -64258692 + MLT1L LTR MaLR 121 457 -158 2190 119 0 25 chr1 178405661 178405979 -64258374 + AluSx SINE Alu 1 310 -2 834 271 111 73 chr1 178405979 178406111 -64258242 + MLT1L LTR MaLR 457 583 -32 259 338 102 23 chr1 178406130 178406473 -64257880 - L2 LINE L2 -520 2794 2425 221 337 58 12 chr1 178406462 178406548 -64257805 + MIR SINE MIR 31 120 -88 * 759 110 8 25 chr1 178406626 178406744 -64257609 - FLAM_C SINE Alu -26 117 2 1629 161 30 37 chr1 178407000 178407299 -64257054 - AluJo SINE Alu -15 297 1 180 0 0 0 chr1 178407310 178407330 -64257023 + (T)n Simple_repeat Simple_repeat 1 20 0 1532 116 0 0 chr1 178407356 178407554 -64256799 - AluSx SINE Alu -114 198 1 409 349 42 0 chr1 178408008 178408200 -64256153 + LTR16A LTR ERVL 199 398 -52 * 1782 216 19 64 chr1 178408198 178408666 -64255687 - MER31B LTR ERV1 -19 447 1 1920 216 53 13 chr1 178408904 178409500 -64254853 + L1ME LINE L1 5083 5704 -462 2029 148 65 34 chr1 178409500 178409885 -64254468 - MSTA LTR MaLR -9 419 23 1617 176 0 33 chr1 178409897 178410204 -64254149 + AluJo SINE Alu 11 307 -5 486 255 106 48 chr1 178410469 178410796 -64253557 - MLT1K LTR MaLR -3 585 210 1743 167 156 90 chr1 178410995 178411449 -64252904 + MLT2B3 LTR ERVL 1 501 -36 2696 133 22 0 chr1 178411469 178411874 -64252479 - LTR26B LTR ERV1 -117 414 1 215 315 11 0 chr1 178411967 178412056 -64252297 - L2 LINE L2 -1901 1413 1324 363 23 0 0 chr1 178412811 178412855 -64251498 + (TG)n Simple_repeat Simple_repeat 2 45 0 239 318 56 9 chr1 178412877 178412984 -64251369 + L2 LINE L2 3202 3313 0 1508 174 70 24 chr1 178412995 178413433 -64250920 + AluJo SINE Alu 1 452 0 1315 161 96 20 chr1 178414259 178414508 -64249845 - AluJo SINE Alu -44 268 1 2098 134 3 0 chr1 178414513 178414811 -64249542 - AluSq SINE Alu -12 301 3 430 362 93 32 chr1 178415127 178415566 -64248787 - L2 LINE L2 0 3272 2807 293 325 121 38 chr1 178415701 178416122 -64248231 - L2 LINE L2 -616 2698 2243 505 236 6 112 chr1 178416129 178416290 -64248063 + MLT1J LTR MaLR 9 152 -359 712 202 17 45 chr1 178417092 178417270 -64247083 - L1MB8 LINE L1 -7 6171 5999 317 189 85 3 chr1 178417371 178417474 -64246879 - MIR SINE MIR -70 138 20 4658 203 189 31 chr1 178417561 178418340 -64246013 - L1MC4 LINE L1 0 8042 7388 2009 159 0 3 chr1 178418340 178418649 -64245704 - AluJb SINE Alu 0 312 5 4658 203 189 31 chr1 178418649 178418815 -64245538 - L1MC4 LINE L1 -654 7388 7250 1638 242 106 15 chr1 178418815 178419278 -64245075 - MLT1D LTR MaLR 0 505 1 4658 203 189 31 chr1 178419278 178419698 -64244655 - L1MC4 LINE L1 -792 7250 6459 446 298 53 40 chr1 178420910 178421212 -64243141 + MARNA DNA Mariner 7 312 -274 366 342 7 20 chr1 178421344 178421493 -64242860 - MIR SINE MIR -108 154 8 299 29 0 0 chr1 178422500 178422535 -64241818 + U2 snRNA snRNA 1 35 -153 378 293 0 0 chr1 178422662 178422744 -64241609 + L2 LINE L2 3173 3254 -18 688 250 41 6 chr1 178423501 178423673 -64240680 - MER5B DNA MER1_type 0 178 1 787 144 92 6 chr1 178424023 178424197 -64240156 + MER53 DNA DNA 1 189 0 489 256 31 16 chr1 178424286 178424415 -64239938 - MER94 DNA DNA -2 132 2 * 3652 148 93 6 chr1 178424414 178425068 -64239285 + MER50 LTR ERV1 1 711 -23 2159 131 0 0 chr1 178426403 178426701 -64237652 - AluSq SINE Alu -15 298 1 33 0 0 0 chr1 178426708 178426741 -64237612 + AT_rich Low_complexity Low_complexity 1 33 0 630 226 109 0 chr1 178428269 178428476 -64235877 + MIR SINE MIR 35 262 0 2475 80 0 0 chr1 178428517 178428816 -64235537 - AluSg SINE Alu -11 299 1 3798 71 12 2 chr1 178428816 178429308 -64235045 - THE1A-int LTR MaLR -1083 497 1 2734 66 8 36 chr1 178429308 178429673 -64234680 - THE1A LTR MaLR 0 355 1 1810 158 20 13 chr1 178429756 178430054 -64234299 + AluJo SINE Alu 1 300 -12 2109 127 3 3 chr1 178430164 178430463 -64233890 - AluSx SINE Alu -13 299 1 320 264 143 0 chr1 178430807 178430898 -64233455 + MLT1G LTR MaLR 27 130 -460 393 224 24 0 chr1 178430905 178430990 -64233363 + MER96 DNA MER1_type? 1 87 -88 372 240 106 67 chr1 178431000 178431254 -64233099 - ERVL LTR ERVL -1303 3693 3430 1482 336 33 11 chr1 178431347 178431989 -64232364 - ERVL LTR ERVL -2165 3599 2944 494 235 31 0 chr1 178432082 178432180 -64232173 - ERVL LTR ERVL -1470 4294 4194 516 256 96 15 chr1 178432217 178432416 -64231937 - ERVL LTR ERVL -1409 4076 3862 1746 298 102 9 chr1 178432461 178433179 -64231174 - ERVL LTR ERVL -1698 3787 2981 2441 318 40 15 chr1 178433187 178434024 -64230329 - ERVL LTR ERVL -2646 2839 1963 1420 228 93 30 chr1 178434024 178434463 -64229890 - MLT1C LTR MaLR 0 467 1 2441 318 40 15 chr1 178434463 178434693 -64229660 - ERVL LTR ERVL -3522 1963 1740 2055 129 3 0 chr1 178434860 178435197 -64229156 + AluSx SINE Alu 1 338 0 478 195 0 12 chr1 178436327 178436409 -64227944 + MER97c DNA MER1_type? 1 81 -1009 1572 179 31 34 chr1 178436437 178436822 -64227531 + MER97b DNA MER1_type? 410 793 -260 1950 155 7 0 chr1 178436826 178437130 -64227223 + AluJb SINE Alu 1 306 -6 198 0 0 0 chr1 178437130 178437152 -64227201 + (TA)n Simple_repeat Simple_repeat 2 23 0 499 240 56 46 chr1 178437297 178437493 -64226860 + MER97c DNA MER1_type? 875 1072 -18 286 212 53 97 chr1 178437509 178437622 -64226731 + L1MC5 LINE L1 7828 7935 -26 2117 98 3 63 chr1 178438406 178438724 -64225629 - AluSc SINE Alu -10 299 1 532 322 12 0 chr1 178439036 178439207 -64225146 - MIR3 SINE MIR -5 203 31 2147 117 13 0 chr1 178439830 178440129 -64224224 - AluSc SINE Alu -6 303 1 1272 112 151 0 chr1 178440272 178440477 -64223876 - MER1B DNA MER1_type 0 339 104 996 149 0 0 chr1 178440968 178441116 -64223237 - FRAM SINE Alu -28 148 1 1849 114 0 4 chr1 178441722 178442011 -64222342 - AluSx SINE Alu 0 326 39 274 170 21 0 chr1 178442046 178442093 -64222260 - AluSg/x SINE Alu -134 168 121 818 244 62 40 chr1 178442107 178442382 -64221971 - MLT1I LTR MaLR -121 288 8 400 276 57 0 chr1 178443190 178443295 -64221058 + L2 LINE L2 3162 3272 0 2117 168 30 51 chr1 178443565 178444035 -64220318 + MLT1C LTR MaLR 1 460 -7 254 286 0 39 chr1 178444361 178444438 -64219915 + GA-rich Low_complexity Low_complexity 1 74 0 26 0 0 0 chr1 178445123 178445149 -64219204 + AT_rich Low_complexity Low_complexity 1 26 0 360 211 127 21 chr1 178446693 178446835 -64217518 - MIR SINE MIR -27 235 79 180 308 113 62 chr1 178447898 178448093 -64216260 - L2 LINE L2 -173 3099 2895 2290 103 0 0 chr1 178448521 178448813 -64215540 - AluSx SINE Alu -15 297 6 1182 69 0 0 chr1 178448887 178449062 -64215291 - AluY SINE Alu 0 315 141 2316 73 7 0 chr1 178449166 178449453 -64214900 + AluSq SINE Alu 21 309 -4 208 77 51 0 chr1 178449453 178449492 -64214861 + (TA)n Simple_repeat Simple_repeat 2 42 0 270 314 48 57 chr1 178450223 178450433 -64213920 + L2 LINE L2 3099 3306 -7 192 97 0 0 chr1 178450438 178450469 -64213884 + (GA)n Simple_repeat Simple_repeat 1 31 0 2216 97 0 41 chr1 178451728 178452047 -64212306 + AluSx SINE Alu 1 306 -6 382 313 27 7 chr1 178452748 178452895 -64211458 + L2 LINE L2 2555 2704 -610 1668 251 48 37 chr1 178452903 178453441 -64210912 - MLT1H1 LTR MaLR 0 555 12 1830 173 3 10 chr1 178453443 178453755 -64210598 - AluJo SINE Alu -2 310 1 404 300 39 56 chr1 178455113 178455293 -64209060 + L2 LINE L2 2712 2888 -426 911 200 5 16 chr1 178455346 178455531 -64208822 - FRAM SINE Alu -1 175 1 258 177 16 0 chr1 178456573 178456635 -64207718 + FLAM_A SINE Alu 70 132 -1 780 164 39 0 chr1 178456665 178456793 -64207560 + AluJo/FLAM SINE Alu 1 133 -169 2164 117 10 0 chr1 178456794 178457102 -64207251 + AluY SINE Alu 1 311 0 200 356 0 0 chr1 178457117 178457176 -64207177 - MIR SINE MIR -147 115 57 1985 124 48 26 chr1 178457392 178457939 -64206414 - LTR10E LTR ERV1 -21 612 1 237 222 159 0 chr1 178458325 178458388 -64205965 + MIR SINE MIR 113 185 -77 756 269 86 86 chr1 178458413 178458500 -64205853 + MLT1K LTR MaLR 61 147 -441 2007 113 48 14 chr1 178458500 178458792 -64205561 + AluJb SINE Alu 1 302 -10 756 269 86 86 chr1 178458792 178459202 -64205151 + MLT1K LTR MaLR 146 558 -30 276 206 82 0 chr1 178459233 178459306 -64205047 + MIR SINE MIR 178 256 -6 210 186 23 0 chr1 178460224 178460267 -64204086 + CT-rich Low_complexity Low_complexity 1 44 0 2348 105 0 0 chr1 178460281 178460585 -64203768 - AluSx SINE Alu -8 304 1 239 282 71 0 chr1 178460869 178460954 -64203399 + MER113 DNA MER1_type? 389 479 -42 1861 105 98 4 chr1 178461158 178461434 -64202919 + AluSq SINE Alu 1 302 -11 2998 162 59 17 chr1 178461434 178461688 -64202665 - L1M4 LINE L1 -3389 2993 2751 219 88 0 0 chr1 178461688 178461722 -64202631 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1897 79 87 4 chr1 178461726 178461980 -64202373 - AluSx SINE Alu -30 282 8 2998 162 59 17 chr1 178461980 178461994 -64202359 - L1M4 LINE L1 -3633 2749 2737 2008 123 97 0 chr1 178461994 178462303 -64202050 - MER44D DNA MER2_type 0 609 1 2998 162 59 17 chr1 178462303 178463247 -64201106 - L1M4 LINE L1 -3645 2737 1571 194 335 99 55 chr1 178463451 178463723 -64200630 - L2 LINE L2 -470 2844 2561 260 293 49 0 chr1 178463771 178463853 -64200500 + L2 LINE L2 3195 3280 -33 1962 130 36 0 chr1 178463861 178464138 -64200215 - AluSg SINE Alu -23 287 1 268 137 21 0 chr1 178464177 178464225 -64200128 - Alu SINE Alu -264 36 1 26 30 0 0 chr1 178465102 178465135 -64199218 + AT_rich Low_complexity Low_complexity 1 33 0 2192 153 34 3 chr1 178465813 178466140 -64198213 + MER1B DNA MER1_type 1 337 0 496 209 24 157 chr1 178466355 178466565 -64197788 - MIR SINE MIR -2 260 79 2252 102 0 0 chr1 178466581 178466884 -64197469 - AluSx SINE Alu -9 303 1 671 244 0 8 chr1 178466887 178467018 -64197335 - FLAM_A SINE Alu -3 130 1 3442 90 24 2 chr1 178467408 178467863 -64196490 - MER4C LTR ERV1 0 465 1 282 203 34 0 chr1 178468556 178468615 -64195738 - L2 LINE L2 -8 3305 3245 730 232 73 0 chr1 178469317 178469494 -64194859 - MER21B LTR ERV1 -60 803 614 3587 128 17 96 chr1 178469520 178470209 -64194144 - LTR8 LTR ERV1 0 691 57 847 174 65 0 chr1 178470362 178470500 -64193853 - AluSg/x SINE Alu -29 283 137 601 269 13 53 chr1 178470505 178470648 -64193705 - MIR SINE MIR -44 218 86 1797 164 3 23 chr1 178470648 178470947 -64193406 + AluJo SINE Alu 1 293 -19 601 269 13 53 chr1 178470947 178471030 -64193323 - MIR SINE MIR -176 86 1 4552 156 61 191 chr1 178471307 178471408 -64192945 - L1MC4 LINE L1 -42 8000 7887 212 0 36 0 chr1 178471408 178471436 -64192917 + (CA)n Simple_repeat Simple_repeat 2 30 0 4552 156 61 191 chr1 178471436 178471536 -64192817 - L1MC4 LINE L1 -155 7887 7776 4194 159 30 40 chr1 178471536 178472277 -64192076 - MER44D DNA MER2_type 0 605 1 4552 156 61 191 chr1 178472277 178473041 -64191312 - L1MC4 LINE L1 -266 7776 6914 1430 234 61 61 chr1 178473041 178473502 -64190851 - LTR40c LTR ERVL -4 461 1 4552 156 61 191 chr1 178473502 178473786 -64190567 - L1MC4 LINE L1 -1128 6914 6595 1714 214 71 33 chr1 178473786 178474235 -64190118 - MLT1C LTR MaLR -1 466 1 4552 156 61 191 chr1 178474235 178474439 -64189914 - L1MC4 LINE L1 -1447 6595 6838 2295 69 3 39 chr1 178474439 178474745 -64189608 - AluSg SINE Alu -15 295 1 4552 156 61 191 chr1 178474745 178475156 -64189197 - L1MC4 LINE L1 -1203 6839 6376 350 201 19 19 chr1 178475172 178475265 -64189088 - L1ME2 LINE L1 -1 6165 6073 1131 271 66 59 chr1 178475956 178476495 -64187858 - L2 LINE L2 -2 3311 2763 32 0 0 0 chr1 178477366 178477398 -64186955 + AT_rich Low_complexity Low_complexity 1 32 0 504 229 87 104 chr1 178478284 178478477 -64185876 - MER102b DNA MER1_type -1096 332 142 2151 126 7 0 chr1 178478477 178478779 -64185574 - AluSx SINE Alu -8 304 1 504 229 87 104 chr1 178478779 178478816 -64185537 - MER102b DNA MER1_type -1286 142 106 620 329 83 52 chr1 178478916 178479469 -64184884 + L2 LINE L2 2292 2861 -453 1809 140 7 3 chr1 178479518 178479803 -64184550 - AluJb SINE Alu -8 304 19 455 147 0 15 chr1 178479817 178479908 -64184445 - L1MA4A LINE L1 -3 6274 6068 2539 137 12 7 chr1 178479910 178480103 -64184250 - L1MA4A LINE L1 -186 6117 5925 580 299 40 18 chr1 178480103 178480381 -64183972 - L1MC3 LINE L1 -1859 5926 5643 1769 159 7 23 chr1 178480381 178480683 -64183670 - AluJo SINE Alu -15 297 1 230 152 0 0 chr1 178480745 178480778 -64183575 + Alu SINE Alu 1 33 -270 621 216 9 0 chr1 178481170 178481281 -64183072 + MER81 DNA DNA 3 114 0 2323 89 0 0 chr1 178481433 178481724 -64182629 + AluSx SINE Alu 1 291 -21 2054 121 3 23 chr1 178482513 178482819 -64181534 + AluSx SINE Alu 1 300 -12 1225 119 0 0 chr1 178482819 178482987 -64181366 + AluSg/x SINE Alu 132 299 -11 1849 171 0 16 chr1 178483562 178483878 -64180475 - AluJb SINE Alu -1 311 1 1844 263 78 46 chr1 178483971 178484628 -64179725 - MER21B LTR ERV1 -11 852 175 1843 166 6 10 chr1 178484688 178485001 -64179352 - AluJo SINE Alu 0 312 1 383 315 18 55 chr1 178485330 178485549 -64178804 - MLT1K LTR MaLR -341 247 37 2370 83 3 0 chr1 178485554 178485856 -64178497 + AluSp SINE Alu 1 303 -10 23 0 0 0 chr1 178486261 178486284 -64178069 + AT_rich Low_complexity Low_complexity 1 23 0 276 179 8 49 chr1 178486324 178486447 -64177906 + CT-rich Low_complexity Low_complexity 3 120 0 668 295 42 45 chr1 178487525 178487881 -64176472 - L1MC5 LINE L1 -67 7894 7540 310 243 0 14 chr1 178488150 178488224 -64176129 - MIR SINE MIR -4 258 186 770 90 0 8 chr1 178489251 178489373 -64174980 + (TTTC)n Simple_repeat Simple_repeat 1 121 0 1641 77 0 0 chr1 178489373 178489568 -64174785 - AluSg/x SINE Alu -32 280 86 1016 286 53 63 chr1 178490338 178490454 -64173899 + L2 LINE L2 2827 2943 -370 530 221 209 32 chr1 178490454 178490612 -64173741 - MER5A DNA MER1_type 0 189 4 1016 286 53 63 chr1 178490612 178490985 -64173368 + L2 LINE L2 2943 3311 -2 343 282 103 8 chr1 178491724 178491841 -64172512 - MIR SINE MIR -87 175 48 440 308 8 0 chr1 178492136 178492253 -64172100 - MIR3 SINE MIR -4 204 87 1619 144 42 19 chr1 178493291 178493554 -64170799 - AluJb SINE Alu -12 300 32 3878 104 34 71 chr1 178493577 178494144 -64170209 + MER4A LTR ERV1 1 545 -55 2377 96 0 0 chr1 178494144 178494447 -64169906 - AluSg SINE Alu -5 305 3 3878 104 34 71 chr1 178494447 178494502 -64169851 + MER4A LTR ERV1 545 600 0 295 250 6 58 chr1 178494655 178494811 -64169542 + GA-rich Low_complexity Low_complexity 3 150 0 208 185 15 15 chr1 178494995 178495060 -64169293 + GA-rich Low_complexity Low_complexity 5 69 0 225 154 0 0 chr1 178495064 178495103 -64169250 + CT-rich Low_complexity Low_complexity 2 40 0 1773 147 0 0 chr1 178495111 178495377 -64168976 - AluJo SINE Alu -46 266 1 2613 164 19 0 chr1 178495741 178496169 -64168184 - MER101 LTR ERV1 -38 436 1 1808 68 128 19 chr1 178496418 178496683 -64167670 + AluSc SINE Alu 1 294 -15 1738 160 3 26 chr1 178496742 178496969 -64167384 + AluSx SINE Alu 1 221 -91 4061 134 33 20 chr1 178496969 178497605 -64166748 + LTR9B LTR ERV1 1 644 0 1738 160 3 26 chr1 178497605 178497683 -64166670 + AluSx SINE Alu 221 299 -13 862 269 101 37 chr1 178497703 178498078 -64166275 - L2 LINE L2 -61 3252 2854 181 313 62 0 chr1 178498079 178498159 -64166194 + L2 LINE L2 3229 3313 0 5056 159 19 4 chr1 178498192 178499725 -64164628 + L1PB3 LINE L1 4601 6152 -2 3960 141 106 33 chr1 178499848 178500614 -64163739 - LTR12 LTR ERV1 0 826 5 1870 197 37 33 chr1 178500630 178501230 -64163123 - pTR5 LTR ERV1 -1094 1344 743 2018 207 120 0 chr1 178501337 178501855 -64162498 + MER99 DNA DNA 203 782 -46 800 111 69 0 chr1 178501910 178502054 -64162299 - Tigger2 DNA MER2_type -113 2605 2452 3792 133 51 21 chr1 178502127 178502621 -64161732 - Tigger2 DNA MER2_type -1972 746 222 2169 86 43 0 chr1 178502621 178502901 -64161452 + AluSq SINE Alu 1 292 -21 3792 133 51 21 chr1 178502901 178503130 -64161223 - Tigger2 DNA MER2_type -2496 222 1 1229 182 12 4 chr1 178503256 178503503 -64160850 - MER90 LTR ERV1 0 614 366 1611 166 9 31 chr1 178503546 178503779 -64160574 - MER50 LTR ERV1 -25 709 483 1497 126 157 8 chr1 178503779 178503911 -64160442 - AluSx SINE Alu -2 300 189 295 23 45 0 chr1 178503911 178503955 -64160398 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1497 126 157 8 chr1 178503955 178504083 -64160270 - AluSx SINE Alu -113 189 1 1611 166 9 31 chr1 178504083 178504169 -64160184 - MER50 LTR ERV1 -251 483 397 1555 85 20 20 chr1 178504163 178504411 -64159942 - MER50 LTR ERV1 -486 248 1 * 882 248 68 6 chr1 178504422 178504733 -64159620 - MER90 LTR ERV1 -243 332 3 2293 204 86 17 chr1 178504770 178505364 -64158989 - L1ME3A LINE L1 -23 6147 5513 350 272 69 14 chr1 178505381 178505598 -64158755 + L1M4 LINE L1 3589 3817 -2329 480 205 126 0 chr1 178505922 178506049 -64158304 + MIR SINE MIR 59 201 -61 22 70 0 0 chr1 178507023 178507066 -64157287 + GC_rich Low_complexity Low_complexity 1 43 0 1742 59 129 19 chr1 178508045 178508322 -64156031 + AluSp SINE Alu 1 305 0 317 289 145 7 chr1 178508427 178508579 -64155774 - MIR3 SINE MIR -5 203 31 190 225 0 0 chr1 178508688 178508728 -64155625 - L2 LINE L2 -11 3302 3263 710 142 71 31 chr1 178508817 178508944 -64155409 - FLAM_C SINE Alu 0 133 2 2280 99 0 3 chr1 178508950 178509252 -64155101 - AluSq SINE Alu -12 301 1 743 189 5 70 chr1 178509511 178509696 -64154657 - FRAM SINE Alu -3 173 1 2005 108 27 34 chr1 178510791 178511086 -64153267 - AluSx SINE Alu -14 298 6 5546 169 38 5 chr1 178511096 178512208 -64152145 + Charlie1 DNA MER1_type 1613 2761 0 256 338 126 39 chr1 178512625 178512856 -64151497 + MIR SINE MIR 1 251 -11 191 310 166 43 chr1 178513022 178513209 -64151144 - L2 LINE L2 -263 3050 2841 208 256 47 23 chr1 178515234 178515320 -64149033 + MER5C DNA MER1_type 1 88 -236 632 233 137 98 chr1 178515792 178516222 -64148131 + L1MC4 LINE L1 7336 7782 -260 1339 119 5 0 chr1 178516593 178516778 -64147575 - AluSg/x SINE Alu 0 310 125 7231 168 28 6 chr1 178516878 178519089 -64145264 + L1PA14 LINE L1 3888 6161 0 31 26 0 0 chr1 178519511 178519549 -64144804 + AT_rich Low_complexity Low_complexity 1 38 0 524 265 8 0 chr1 178519702 178519819 -64144534 + MIR SINE MIR 106 223 -39 663 222 16 0 chr1 178520041 178520167 -64144186 - FLAM_A SINE Alu -5 128 1 1496 155 9 116 chr1 178520253 178520589 -64143764 + AluJo SINE Alu 1 300 -2 414 218 68 0 chr1 178520674 178520807 -64143546 - L1MC/D LINE L1 -1985 5823 5682 269 215 114 18 chr1 178521370 178521578 -64142775 - L1MC/D LINE L1 -607 5557 5324 1804 163 17 13 chr1 178524041 178524341 -64140012 + AluJb SINE Alu 1 301 -11 2712 74 14 0 chr1 178524368 178524718 -64139635 - THE1A LTR MaLR 0 355 1 2772 10 0 0 chr1 178526088 178526388 -64137965 + AluYa5 SINE Alu 1 300 -11 219 219 0 0 chr1 178526729 178526770 -64137583 + (CA)n Simple_repeat Simple_repeat 2 42 0 382 295 108 7 chr1 178527445 178527584 -64136769 + MIR SINE MIR 46 198 -64 315 194 36 137 chr1 178527886 178528025 -64136328 - L1ME3A LINE L1 -14 6156 6032 389 231 34 41 chr1 178528061 178528076 -64136277 - L1MA9 LINE L1 0 6312 6298 705 231 35 35 chr1 178528076 178528305 -64136048 - L1ME1 LINE L1 -10 6156 5928 1703 188 7 3 chr1 178528305 178528598 -64135755 - AluJo SINE Alu -8 304 11 632 178 96 0 chr1 178528599 178528745 -64135608 - L1ME1 LINE L1 -320 5844 5685 840 71 94 0 chr1 178529184 178529311 -64135042 + MER85 DNA T2_type 1 139 0 24 0 0 0 chr1 178529312 178529336 -64135017 + AT_rich Low_complexity Low_complexity 1 24 0 2369 86 3 13 chr1 178529467 178529782 -64134571 + AluSx SINE Alu 1 312 0 593 174 0 0 chr1 178529930 178530028 -64134325 - Tigger7 DNA MER2_type -8 2579 2482 795 172 134 16 chr1 178530039 178530225 -64134128 - Tigger7 DNA MER2_type -524 209 2 791 169 0 15 chr1 178530784 178530914 -64133439 + FLAM_A SINE Alu 1 128 -5 29 47 0 0 chr1 178531113 178531156 -64133197 + AT_rich Low_complexity Low_complexity 1 43 0 2351 88 3 0 chr1 178531415 178531711 -64132642 - AluSx SINE Alu -15 297 1 537 188 112 24 chr1 178531965 178532135 -64132218 + MER106A DNA MER1_type 29 213 -23 22 70 0 0 chr1 178532523 178532566 -64131787 + AT_rich Low_complexity Low_complexity 1 43 0 2058 145 3 0 chr1 178532569 178532866 -64131487 + AluSx SINE Alu 1 298 -14 1764 161 31 31 chr1 178533695 178533868 -64130485 - AluSx SINE Alu -5 307 132 2381 70 0 35 chr1 178533868 178534184 -64130169 - AluY SINE Alu -6 305 1 1764 161 31 31 chr1 178534184 178534302 -64130051 - AluSx SINE Alu -179 133 16 239 220 102 0 chr1 178535331 178535390 -64128963 + MIR SINE MIR 81 145 -63 1366 150 85 37 chr1 178535391 178535637 -64128716 + AluJo SINE Alu 1 258 -54 2131 115 0 0 chr1 178537096 178537382 -64126971 - AluSx SINE Alu -26 286 1 1822 149 0 21 chr1 178537388 178537677 -64126676 - AluJb SINE Alu -9 303 21 28 0 0 0 chr1 178537683 178537711 -64126642 + AT_rich Low_complexity Low_complexity 1 28 0 1079 168 31 11 chr1 178537711 178537902 -64126451 - AluJo SINE Alu -31 281 87 266 290 21 0 chr1 178537956 178538049 -64126304 + L1ME4a LINE L1 5524 5618 -503 326 226 131 30 chr1 178538100 178538299 -64126054 + L1ME4a LINE L1 5725 5943 -178 23 33 0 0 chr1 178538554 178538584 -64125769 + AT_rich Low_complexity Low_complexity 1 30 0 212 259 0 0 chr1 178538595 178538649 -64125704 - MIR SINE MIR -13 249 196 180 176 0 0 chr1 178538649 178538683 -64125670 + (TATG)n Simple_repeat Simple_repeat 4 37 0 708 209 151 0 chr1 178538683 178538855 -64125498 - MIR SINE MIR -61 201 4 209 296 82 41 chr1 178540887 178540974 -64123379 - L2 LINE L2 0 3313 3220 1779 146 31 3 chr1 178540974 178541262 -64123091 - AluJb SINE Alu -16 296 1 322 256 0 0 chr1 178541499 178541577 -64122776 + AluSp/q SINE Alu 204 281 -22 427 268 77 25 chr1 178541660 178541895 -64122458 + L1MC4 LINE L1 7781 8027 -15 963 206 0 0 chr1 178543442 178543607 -64120746 + FRAM SINE Alu 1 165 -1 246 315 93 9 chr1 178543698 178543806 -64120547 + MIR3 SINE MIR 40 156 -52 24 53 0 0 chr1 178544081 178544119 -64120234 + AT_rich Low_complexity Low_complexity 1 38 0 318 264 35 0 chr1 178594549 178594636 -64069717 + L1MC4 LINE L1 7790 7879 -163 27 0 0 0 chr1 178594710 178594737 -64069616 + AT_rich Low_complexity Low_complexity 1 27 0 182 437 0 0 chr1 178595058 178595129 -64069224 + L2 LINE L2 2560 2630 -684 259 301 29 59 chr1 178596414 178596550 -64067803 + L2 LINE L2 3149 3280 -33 201 344 83 57 chr1 178596748 178596905 -64067448 + L2 LINE L2 3075 3235 -37 30 45 0 0 chr1 178597316 178597360 -64066993 + AT_rich Low_complexity Low_complexity 1 44 0 404 365 12 36 chr1 178597604 178597771 -64066582 + MER115 DNA AcHobo 261 423 -270 287 121 17 52 chr1 178597766 178597824 -64066529 + Zaphod DNA AcHobo 3976 4031 0 * 1391 127 152 28 chr1 178598043 178598326 -64066027 + MER44D DNA MER2_type 1 588 -21 2458 172 31 2 chr1 178598327 178598803 -64065550 + L1P LINE L1 4889 5378 -768 675 263 148 9 chr1 178599994 178600211 -64064142 - MIR SINE MIR -1 261 15 2261 104 7 10 chr1 178600917 178601225 -64063128 + AluSc SINE Alu 2 308 -1 710 237 71 30 chr1 178602034 178602232 -64062121 + MIR SINE MIR 15 220 -42 180 0 0 0 chr1 178603529 178603549 -64060804 + (T)n Simple_repeat Simple_repeat 1 20 0 34 0 0 0 chr1 178603684 178603718 -64060635 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr1 178603731 178603761 -64060592 + AT_rich Low_complexity Low_complexity 1 30 0 397 289 257 8 chr1 178604111 178604364 -64059989 - L2 LINE L2 0 3313 2998 219 368 8 56 chr1 178604456 178604581 -64059772 - MER5B DNA MER1_type 0 178 60 659 147 9 0 chr1 178604848 178604957 -64059396 + AluSq/x SINE Alu 1 110 -202 560 158 0 0 chr1 178604965 178605073 -64059280 + FLAM_A SINE Alu 37 144 0 914 146 19 6 chr1 178605091 178605249 -64059104 - L1MB3 LINE L1 -84 6099 5940 822 132 0 0 chr1 178605351 178605472 -64058881 - AluSq/x SINE Alu -192 121 1 2060 85 21 14 chr1 178607407 178607718 -64056635 + AluSq SINE Alu 1 313 0 21 0 0 0 chr1 178607742 178607763 -64056590 + AT_rich Low_complexity Low_complexity 1 21 0 3630 101 48 11 chr1 178608928 178609475 -64054878 + L1PA11 LINE L1 5594 6160 -14 8663 130 71 14 chr1 178609475 178610966 -64053387 + Tigger2 DNA MER2_type 1142 2717 -1 354 200 112 8 chr1 178611049 178611174 -64053179 - MER104 DNA Tc2 -41 139 2 2541 41 0 0 chr1 178611230 178611521 -64052832 - AluY SINE Alu -20 291 1 21 36 0 0 chr1 178612571 178612599 -64051754 + AT_rich Low_complexity Low_complexity 1 28 0 2302 93 0 0 chr1 178613449 178613762 -64050591 - AluSg SINE Alu 0 310 1 330 331 49 49 chr1 178614568 178614731 -64049622 + MIR SINE MIR 49 211 -51 210 150 0 0 chr1 178614852 178614892 -64049461 + (A)n Simple_repeat Simple_repeat 1 40 0 314 259 125 9 chr1 178615176 178615288 -64049065 - MLT1E1 LTR MaLR -529 125 1 296 336 114 24 chr1 178615291 178615589 -64048764 - L3 LINE CR1 -544 1033 709 455 294 87 24 chr1 178616009 178616261 -64048092 - L1ME LINE L1 -342 5779 5512 514 273 97 0 chr1 178616890 178617044 -64047309 + MIR SINE MIR 84 252 -10 751 164 8 0 chr1 178617732 178617860 -64046493 - FLAM_C SINE Alu -4 129 1 7385 155 25 49 chr1 178618230 178619314 -64045039 - L1 LINE L1 -3505 3343 2323 1577 201 43 0 chr1 178619314 178619613 -64044740 - AluJb SINE Alu 0 312 1 7385 155 25 49 chr1 178619613 178620447 -64043906 - L1 LINE L1 -4525 2323 1470 1756 155 28 21 chr1 178620805 178621096 -64043257 - AluJo SINE Alu -13 299 7 21 0 0 0 chr1 178621215 178621236 -64043117 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr1 178621287 178621317 -64043036 + AT_rich Low_complexity Low_complexity 1 30 0 606 271 35 62 chr1 178622042 178622300 -64042053 - Charlie2 DNA MER1_type -2605 257 7 546 256 134 20 chr1 178623395 178623641 -64040712 + MER102b DNA MER1_type 36 309 -32 269 344 67 0 chr1 178623658 178623748 -64040605 + MIR SINE MIR 5 100 -162 2240 105 0 0 chr1 178623778 178624074 -64040279 + AluY SINE Alu 1 296 -15 816 319 80 18 chr1 178624076 178624402 -64039951 - L3 LINE CR1 -24 1553 1208 261 183 312 21 chr1 178625556 178625649 -64038704 - L1MC5 LINE L1 -37 7924 7805 201 74 0 0 chr1 178627517 178627544 -64036809 + (A)n Simple_repeat Simple_repeat 1 27 0 42 48 0 0 chr1 178628053 178628116 -64036237 + AT_rich Low_complexity Low_complexity 1 63 0 227 241 17 0 chr1 178628414 178628472 -64035881 - L1ME3 LINE L1 -29 6202 6144 3104 209 47 16 chr1 178628668 178629967 -64034386 - L1ME3 LINE L1 -255 5998 4655 * 8217 38 5 2 chr1 178629962 178631603 -64032750 + L1PA4 LINE L1 4370 6016 -139 2242 264 123 28 chr1 178631703 178632467 -64031886 - L2 LINE L2 -1353 1961 1125 245 229 229 52 chr1 178632457 178632553 -64031800 - L2 LINE L2 -4 3309 3197 * 444 273 161 9 chr1 178632559 178632881 -64031472 + L1ME4a LINE L1 5713 6083 -38 575 210 250 0 chr1 178632888 178633088 -64031265 + L2 LINE L2 1657 1906 -1408 193 212 0 0 chr1 178633834 178633867 -64030486 + L2 LINE L2 3265 3297 -16 23 0 0 0 chr1 178633926 178633949 -64030404 + AT_rich Low_complexity Low_complexity 1 23 0 728 126 45 0 chr1 178634118 178634229 -64030124 - Tigger5 DNA MER2_type 0 2323 2208 2122 131 0 0 chr1 178634241 178634539 -64029814 - AluSx SINE Alu -14 298 1 964 203 7 30 chr1 178634539 178634571 -64029782 - L1ME3 LINE L1 -3997 2399 2368 1522 191 46 53 chr1 178634571 178634964 -64029389 - MLT1B LTR MaLR 0 390 1 964 203 7 30 chr1 178634964 178635202 -64029151 - L1ME3 LINE L1 -4028 2368 2135 * 5916 166 38 7 chr1 178635196 178636613 -64027740 - L1MA4A LINE L1 -53 6250 4785 16197 33 5 16 chr1 178636818 178638868 -64025485 - L1P LINE L1 -873 5273 3246 2369 97 3 3 chr1 178639091 178639422 -64024931 - L1PA3 LINE L1 -62 6093 5763 228 211 141 0 chr1 178639433 178639504 -64024849 - HAL1 LINE L1 -333 2174 2094 297 187 71 2 chr1 178639508 178639596 -64024757 - MLT1H LTR MaLR 0 549 307 350 308 75 27 chr1 178639905 178640051 -64024302 - MIR SINE MIR -51 211 59 21 0 0 0 chr1 178641026 178641047 -64023306 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 178641110 178641132 -64023221 + AT_rich Low_complexity Low_complexity 1 22 0 1083 206 40 9 chr1 178641289 178641517 -64022836 + MER46A DNA MER2_type 1 235 -1 36012 44 5 0 chr1 178642306 178646739 -64017614 - L1P LINE L1 -1652 4494 43 1567 178 11 94 chr1 178646842 178647343 -64017010 + Charlie1b DNA MER1_type 54 522 -1 464 308 62 54 chr1 178647344 178647463 -64016890 - L2 LINE L2 -514 2800 2677 3595 117 31 4 chr1 178647463 178647976 -64016377 - MER1A DNA MER1_type 0 527 1 464 308 62 54 chr1 178647976 178648080 -64016273 - L2 LINE L2 -637 2677 2575 482 168 42 14 chr1 178648081 178648245 -64016108 - MLT1C LTR MaLR -1 466 259 460 143 48 12 chr1 178648247 178648331 -64016022 - MLT1C LTR MaLR -380 87 1 312 275 47 102 chr1 178648331 178648567 -64015786 - L2 LINE L2 -735 2579 2357 1446 188 24 51 chr1 178649857 178650181 -64014172 - AluJo SINE Alu 0 316 1 27 29 0 0 chr1 178651693 178651727 -64012626 + AT_rich Low_complexity Low_complexity 1 34 0 225 94 0 0 chr1 178651985 178652017 -64012336 + (TG)n Simple_repeat Simple_repeat 1 32 0 227 203 0 51 chr1 178652017 178652096 -64012257 + L1MC4 LINE L1 6615 6689 -1353 20020 140 46 37 chr1 178652704 178656134 -64008219 + L1MA2 LINE L1 20 3418 -4305 2911 3 0 0 chr1 178656134 178656447 -64007906 + AluYb8 SINE Alu 1 313 -5 20020 140 46 37 chr1 178656447 178658626 -64005727 + L1MA2 LINE L1 3418 5576 -2147 529 130 0 0 chr1 178658626 178658703 -64005650 - AluS SINE Alu -11 298 222 20020 140 46 37 chr1 178658703 178659642 -64004711 + L1MA2 LINE L1 5576 6505 -1218 2009 149 3 16 chr1 178659642 178659958 -64004395 - AluSx SINE Alu 0 312 1 20020 140 46 37 chr1 178659958 178660954 -64003399 + L1MA2 LINE L1 6505 7723 0 605 304 174 9 chr1 178661004 178661234 -64003119 - L2 LINE L2 0 3272 3005 577 240 0 13 chr1 178661239 178661393 -64002960 + L1MEd LINE L1 2 153 -5966 643 278 83 44 chr1 178661651 178662036 -64002317 + L1MEd LINE L1 495 894 -5225 1833 117 55 52 chr1 178662110 178662418 -64001935 - AluSx SINE Alu -3 309 1 1852 133 17 0 chr1 178662782 178663083 -64001270 - L1MB3 LINE L1 -2 6181 5876 247 48 0 48 chr1 178663093 178663135 -64001218 - L1MA6 LINE L1 -5 6295 6256 663 291 119 11 chr1 178663322 178663590 -64000763 + L2 LINE L2 3002 3298 -15 213 309 49 12 chr1 178665790 178665871 -63998482 + L2 LINE L2 3230 3313 0 2272 100 0 0 chr1 178665873 178666164 -63998189 + AluSx SINE Alu 1 291 -21 733 165 41 0 chr1 178666589 178666710 -63997643 + FLAM_A SINE Alu 1 126 -7 389 264 64 8 chr1 178666876 178667001 -63997352 + L1MC4a LINE L1 500 631 -5488 702 243 58 51 chr1 178667124 178667439 -63996914 + L1MC4a LINE L1 3611 3927 -2202 777 238 145 18 chr1 178667446 178667673 -63996680 + MIR SINE MIR 7 262 0 708 301 91 28 chr1 178667673 178668450 -63995903 + L1MC4a LINE L1 3926 4751 -1378 1126 286 49 8 chr1 178668456 178668826 -63995527 + L1M4b LINE L1 11 395 -6464 942 171 0 13 chr1 178668838 178668990 -63995363 + FRAM SINE Alu 23 172 -4 2248 210 33 40 chr1 178668992 178669511 -63994842 - LTR40a LTR ERVL -4 515 1 746 274 49 13 chr1 178669521 178669828 -63994525 + L1MC4a LINE L1 5397 5714 -431 200 216 0 0 chr1 178669888 178669925 -63994428 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 1465 177 31 4 chr1 178670036 178670296 -63994057 - AluJo SINE Alu -9 303 37 252 250 0 0 chr1 178670316 178670368 -63993985 - MIR SINE MIR -122 140 89 323 284 0 11 chr1 178671154 178671242 -63993111 + L1MC4a LINE L1 5813 5899 -1892 250 156 67 0 chr1 178671491 178671536 -63992817 - L2 LINE L2 -1 3312 3265 891 252 149 71 chr1 178671729 178672453 -63991900 + L1M4b LINE L1 1142 1809 -5138 2187 123 0 0 chr1 178672453 178672745 -63991608 - AluSx SINE Alu -20 292 1 891 252 149 71 chr1 178672745 178672757 -63991596 + L1M4b LINE L1 1809 1819 -5128 5822 85 12 4 chr1 178672757 178673590 -63990763 - L1MA2 LINE L1 0 6304 5465 891 252 149 71 chr1 178673590 178673706 -63990647 + L1M4b LINE L1 1819 2061 -4886 850 234 45 53 chr1 178673724 178674061 -63990292 + L1ME3A LINE L1 5770 6103 -67 383 111 0 16 chr1 178674064 178674127 -63990226 + Tigger2 DNA MER2_type 1 62 -2656 23550 36 3 1 chr1 178674156 178677814 -63986539 - L1PA4 LINE L1 0 6155 2487 1641 33 0 0 chr1 178677814 178678028 -63986325 + L1PA4 LINE L1 2264 2477 -3669 3536 141 43 27 chr1 178678028 178678224 -63986129 + Tigger2 DNA MER2_type 43 234 -2484 1147 66 0 0 chr1 178678224 178678376 -63985977 - L1PA5 LINE L1 -5 6149 5998 3536 141 43 27 chr1 178678376 178678883 -63985470 + Tigger2 DNA MER2_type 234 757 -1961 970 186 113 0 chr1 178678938 178679169 -63985184 + Tigger2 DNA MER2_type 2452 2708 -10 284 290 82 12 chr1 178679287 178679457 -63984896 - MIR SINE MIR -61 147 14 21 57 0 0 chr1 178679877 178679912 -63984441 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 178679934 178679956 -63984397 + AT_rich Low_complexity Low_complexity 1 22 0 219 280 80 0 chr1 178680015 178680090 -63984263 - MIR SINE MIR 0 262 182 25 0 0 0 chr1 178680831 178680856 -63983497 + AT_rich Low_complexity Low_complexity 1 25 0 216 182 18 55 chr1 178681377 178681432 -63982921 - L2 LINE L2 -4 3309 3257 2182 102 0 14 chr1 178682373 178682666 -63981687 + AluSq SINE Alu 1 289 -24 287 179 15 30 chr1 178683350 178683417 -63980936 + L1MCc LINE L1 17 82 -6341 1235 87 0 0 chr1 178683423 178683573 -63980780 - AluY SINE Alu -161 150 1 996 211 47 9 chr1 178683690 178683903 -63980450 + AluSg/x SINE Alu 83 303 -7 206 200 0 0 chr1 178684021 178684061 -63980292 - L3 LINE CR1 -391 1186 1147 261 0 0 0 chr1 178684211 178684240 -63980113 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1703 152 80 0 chr1 178684246 178684509 -63979844 - AluJb SINE Alu -28 284 1 726 189 60 0 chr1 178684509 178684677 -63979676 - MLT1E1 LTR MaLR 0 654 429 5478 152 21 22 chr1 178684928 178684982 -63979371 - Tigger1 DNA MER2_type -1399 1019 966 1931 158 0 3 chr1 178684982 178685286 -63979067 + AluSx SINE Alu 1 303 -9 5478 152 21 22 chr1 178685286 178686250 -63978103 - Tigger1 DNA MER2_type -1452 966 2 289 121 17 0 chr1 178686251 178686309 -63978044 + L1ME1 LINE L1 2919 2977 -3169 896 98 0 38 chr1 178686309 178686441 -63977912 + AluSg/x SINE Alu 173 299 -13 1071 223 99 15 chr1 178686441 178686714 -63977639 + L1ME1 LINE L1 2968 3287 -2859 1683 166 17 20 chr1 178686714 178687016 -63977337 + AluJo SINE Alu 1 301 -11 1071 223 99 15 chr1 178687016 178687145 -63977208 + L1ME1 LINE L1 3287 3404 -2742 21 0 0 0 chr1 178687145 178687166 -63977187 + AT_rich Low_complexity Low_complexity 1 21 0 1150 140 25 30 chr1 178687166 178687366 -63976987 - AluSg/x SINE Alu -23 289 91 2253 108 0 0 chr1 178687566 178687863 -63976490 + AluSx SINE Alu 1 297 -15 775 205 43 0 chr1 178687868 178688029 -63976324 + FAM SINE Alu 1 45 -4 5563 207 76 48 chr1 178688029 178688154 -63976199 + L1ME1 LINE L1 3446 3566 -2600 2239 115 3 29 chr1 178688154 178688466 -63975887 + AluSx SINE Alu 1 304 -8 5563 207 76 48 chr1 178688466 178690817 -63973536 + L1ME1 LINE L1 3566 5977 -189 182 277 109 58 chr1 178690818 178690955 -63973398 + L2 LINE L2 2716 2859 -455 1545 164 55 11 chr1 178691284 178691559 -63972794 + AluJo SINE Alu 1 287 -25 1261 273 99 9 chr1 178691891 178692444 -63971909 - L1ME3A LINE L1 -219 5951 5349 216 0 0 0 chr1 178694158 178694182 -63970171 + (A)n Simple_repeat Simple_repeat 1 24 0 1886 144 20 29 chr1 178694330 178694636 -63969717 - AluJo SINE Alu -9 303 1 358 83 0 0 chr1 178696401 178696449 -63967904 - Alu SINE Alu -12 290 243 * 523 204 58 0 chr1 178696448 178696585 -63967768 + MER104 DNA Tc2 33 177 -3 1590 165 55 14 chr1 178696600 178696891 -63967462 - AluJo SINE Alu -9 303 1 2197 99 0 20 chr1 178697091 178697395 -63966958 + AluSx SINE Alu 1 298 -14 1045 160 56 9 chr1 178697795 178698008 -63966345 - MER46A DNA MER2_type -13 223 1 189 0 0 0 chr1 178698767 178698788 -63965565 + (A)n Simple_repeat Simple_repeat 1 21 0 181 289 97 35 chr1 178700510 178700624 -63963729 + L3 LINE CR1 1244 1364 -213 1177 171 40 5 chr1 178701599 178701798 -63962555 + MER3 DNA MER1_type 2 207 -2 2088 110 0 3 chr1 178702163 178702455 -63961898 + AluSx SINE Alu 1 291 -21 201 74 0 0 chr1 178702912 178702939 -63961414 + (T)n Simple_repeat Simple_repeat 1 27 0 287 250 65 0 chr1 178711007 178711115 -63953238 - MER112 DNA MER1_type -138 122 8 270 195 169 26 chr1 178711500 178711577 -63952776 - MIR SINE MIR 0 262 175 21 36 0 0 chr1 178712312 178712340 -63952013 + AT_rich Low_complexity Low_complexity 1 28 0 237 307 44 26 chr1 178713112 178713226 -63951127 - MIR SINE MIR -53 209 94 371 21 21 0 chr1 178717345 178717393 -63946960 + (TG)n Simple_repeat Simple_repeat 2 50 0 1841 107 52 7 chr1 178717509 178717781 -63946572 + AluJb SINE Alu 3 286 -26 193 265 0 0 chr1 178718902 178718951 -63945402 + L2 LINE L2 3265 3313 0 213 175 0 0 chr1 178718951 178718991 -63945362 + (CGAA)n Simple_repeat Simple_repeat 2 41 0 192 77 0 0 chr1 178719050 178719076 -63945277 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 195 129 0 0 chr1 178719451 178719482 -63944871 + (T)n Simple_repeat Simple_repeat 1 31 0 1314 175 51 16 chr1 178720122 178720379 -63943974 - AluJo SINE Alu -36 276 11 369 153 17 0 chr1 178720590 178720649 -63943704 - AluJ/FLAM SINE Alu -242 60 1 248 330 50 0 chr1 178720778 178720905 -63943448 - MIR SINE MIR -67 141 39 416 248 243 3 chr1 178721680 178722051 -63942302 + L2 LINE L2 628 1087 -2227 515 228 266 13 chr1 178722678 178722911 -63941442 + L2 LINE L2 2244 2535 -779 261 83 0 0 chr1 178722917 178722953 -63941400 + (TTA)n Simple_repeat Simple_repeat 2 37 0 917 163 0 0 chr1 178722955 178723102 -63941251 - FRAM SINE Alu -30 146 1 515 298 143 12 chr1 178723102 178723748 -63940605 + L2 LINE L2 2521 3313 0 358 255 53 0 chr1 178723784 178723878 -63940475 - MIR SINE MIR -116 146 48 528 258 6 67 chr1 178724473 178724651 -63939702 - MIR3 SINE MIR -26 182 16 198 317 69 0 chr1 178724785 178724886 -63939467 - MIR SINE MIR -70 192 85 456 200 0 0 chr1 178726338 178726433 -63937920 + (TG)n Simple_repeat Simple_repeat 2 96 0 182 314 88 10 chr1 178726937 178727039 -63937314 - MIR SINE MIR -70 192 83 183 381 48 0 chr1 178728087 178728192 -63936161 - MIR SINE MIR -99 163 54 236 274 108 20 chr1 178728292 178728394 -63935959 - MIR SINE MIR -74 134 23 264 100 0 0 chr1 178731401 178731441 -63932912 + (CA)n Simple_repeat Simple_repeat 1 40 0 481 157 15 0 chr1 178731756 178731890 -63932463 + (CA)n Simple_repeat Simple_repeat 2 137 0 781 206 50 40 chr1 178732514 178732713 -63931640 - MIR SINE MIR -18 244 44 542 328 78 11 chr1 178733593 178733773 -63930580 + MER91A DNA MER1_type 1 192 -4 203 273 15 45 chr1 178734842 178734908 -63929445 + L2 LINE L2 3209 3272 0 2116 100 4 0 chr1 178735020 178735329 -63929024 - AluSx SINE Alu 0 310 1 893 251 72 21 chr1 178735891 178736126 -63928227 + MIR SINE MIR 16 262 0 400 253 173 12 chr1 178737608 178737770 -63926583 - MIR SINE MIR -24 238 51 1816 149 45 0 chr1 178738475 178738764 -63925589 + AluSx SINE Alu 6 307 -5 187 272 19 0 chr1 178739235 178739338 -63925015 + (CATATA)n Simple_repeat Simple_repeat 2 106 0 234 253 0 36 chr1 178739375 178739458 -63924895 + (CATATA)n Simple_repeat Simple_repeat 6 85 0 198 191 0 0 chr1 178739464 178739511 -63924842 + (CA)n Simple_repeat Simple_repeat 2 48 0 1482 143 4 0 chr1 178739722 178739953 -63924400 + AluJo SINE Alu 81 312 0 498 300 72 33 chr1 178740080 178740260 -63924093 + MIR SINE MIR 37 223 -39 853 127 0 0 chr1 178741425 178741543 -63922810 + FLAM_C SINE Alu 1 118 -25 468 0 0 0 chr1 178747536 178747588 -63916765 + (TA)n Simple_repeat Simple_repeat 1 52 0 216 0 0 0 chr1 178750179 178750203 -63914150 + (CG)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr1 178750587 178750617 -63913736 + GC_rich Low_complexity Low_complexity 1 30 0 217 180 40 20 chr1 178751501 178751551 -63912802 + C-rich Low_complexity Low_complexity 5 55 0 192 158 0 0 chr1 178751854 178751892 -63912461 + C-rich Low_complexity Low_complexity 4 41 0 211 143 16 63 chr1 178752044 178752107 -63912246 + (CGGGG)n Simple_repeat Simple_repeat 5 64 0 25 0 0 0 chr1 178752327 178752352 -63912001 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr1 178752483 178752511 -63911842 + GC_rich Low_complexity Low_complexity 1 28 0 538 346 73 22 chr1 178753268 178753759 -63910594 + L1ME4a LINE L1 5358 5873 -248 325 268 168 23 chr1 178753942 178754238 -63910115 + L1ME4a LINE L1 5617 5985 -136 340 82 82 0 chr1 178754238 178754299 -63910054 + L1MB4 LINE L1 6115 6180 0 325 268 168 23 chr1 178754299 178754394 -63909959 + L1ME4a LINE L1 5985 6065 -56 31 44 0 0 chr1 178754630 178754675 -63909678 + AT_rich Low_complexity Low_complexity 1 45 0 2153 93 10 13 chr1 178754977 178755288 -63909065 - AluSg SINE Alu 0 310 1 236 227 72 31 chr1 178755325 178755422 -63908931 + MIR SINE MIR 46 146 -62 351 306 45 25 chr1 178755518 178755675 -63908678 - MIR SINE MIR 0 262 103 417 261 104 34 chr1 178756102 178756321 -63908032 - MIR3 SINE MIR -1 261 12 919 221 50 0 chr1 178757135 178757357 -63906996 - MIR SINE MIR -6 256 24 2201 110 0 0 chr1 178757575 178757876 -63906477 + AluSx SINE Alu 1 301 -11 327 287 73 47 chr1 178758879 178759029 -63905324 - MIR SINE MIR -2 260 107 327 295 195 30 chr1 178759370 178759570 -63904783 + MIR SINE MIR 29 261 -1 211 308 63 44 chr1 178759808 178759967 -63904386 + MIR SINE MIR 57 218 -44 330 250 68 0 chr1 178760059 178760147 -63904206 - MER5A DNA MER1_type -80 109 16 1251 176 62 62 chr1 178760170 178760447 -63903906 + MER33 DNA MER1_type 1 282 -2303 2200 53 7 18 chr1 178760447 178760754 -63903599 + AluY SINE Alu 1 304 0 1251 176 62 62 chr1 178760754 178760798 -63903555 + MER33 DNA MER1_type 281 324 0 723 208 19 6 chr1 178760837 178760996 -63903357 - L1PA16 LINE L1 -24 6142 5982 1879 114 57 7 chr1 178763159 178763456 -63900897 + AluSx SINE Alu 1 312 0 2065 133 19 3 chr1 178763859 178764176 -63900177 + L1PA13 LINE L1 5839 6160 -3 203 219 0 0 chr1 178765003 178765044 -63899309 + MIR SINE MIR 69 109 -153 274 346 37 9 chr1 178765171 178765278 -63899075 + L2 LINE L2 3203 3312 -1 457 316 16 32 chr1 178765823 178766010 -63898343 - L3 LINE CR1 -2 1575 1392 1649 166 48 3 chr1 178766293 178766583 -63897770 - AluJb SINE Alu -9 303 1 541 137 0 0 chr1 178766616 178766689 -63897664 + tRNA-Val-GTT tRNA tRNA 1 73 -3 289 77 0 0 chr1 178766707 178766746 -63897607 + Alu SINE Alu 1 39 -263 2657 26 0 0 chr1 178766814 178767123 -63897230 + AluY SINE Alu 1 309 -2 2174 91 0 14 chr1 178767135 178767431 -63896922 + AluSc SINE Alu 1 292 -17 468 268 183 34 chr1 178767527 178767773 -63896580 + MLT1H LTR MaLR 19 299 -291 1649 166 48 3 chr1 178768091 178768381 -63895972 - AluJb SINE Alu -9 303 1 541 137 0 0 chr1 178768414 178768487 -63895866 + tRNA-Val-GTT tRNA tRNA 1 73 -3 289 77 0 0 chr1 178768505 178768544 -63895809 + Alu SINE Alu 1 39 -263 2165 92 0 14 chr1 178768614 178768909 -63895444 + AluSc SINE Alu 1 291 -18 718 276 85 72 chr1 178769005 178769496 -63894857 + MLT1H LTR MaLR 19 549 0 345 313 131 11 chr1 178770176 178770250 -63894103 - L1MC4a LINE L1 -363 5801 5737 2186 100 0 10 chr1 178770250 178770560 -63893793 - AluSg1 SINE Alu -2 307 1 1682 166 10 22 chr1 178770562 178770875 -63893478 - AluJo SINE Alu -3 309 1 345 313 131 11 chr1 178770875 178771098 -63893255 - L1MC4a LINE L1 -427 5737 5576 268 265 175 99 chr1 178771319 178771651 -63892702 - L2 LINE L2 -5 3267 2911 1974 132 0 13 chr1 178772374 178772677 -63891676 + AluJo SINE Alu 1 299 -13 1399 160 0 8 chr1 178773316 178773560 -63890793 + AluJo SINE Alu 55 296 -16 296 263 59 26 chr1 178773560 178773712 -63890641 - L1MC4a LINE L1 -1500 4646 4490 2240 118 64 14 chr1 178773788 178774145 -63890208 - THE1C LTR MaLR 0 375 1 290 327 10 20 chr1 178774233 178774283 -63890070 - MIR SINE MIR -108 154 105 2105 114 3 7 chr1 178774283 178774581 -63889772 + AluSx SINE Alu 1 297 -15 290 327 10 20 chr1 178774581 178774631 -63889722 - MIR SINE MIR -157 105 55 203 328 75 17 chr1 178774931 178775105 -63889248 - L2 LINE L2 -903 2411 2228 218 308 218 14 chr1 178775708 178775783 -63888570 - MIR SINE MIR -2 260 202 225 0 0 0 chr1 178775783 178775808 -63888545 + (TC)n Simple_repeat Simple_repeat 1 25 0 1682 132 22 22 chr1 178775808 178776080 -63888273 - AluJb SINE Alu -32 280 9 218 308 218 14 chr1 178776080 178776214 -63888139 - MIR SINE MIR -59 203 7 374 305 61 79 chr1 178776349 178776628 -63887725 - L2 LINE L2 0 3272 2999 294 248 277 59 chr1 178776685 178776788 -63887565 - Charlie8 DNA MER1_type -1903 514 435 1602 170 0 7 chr1 178776788 178777070 -63887283 + AluJo SINE Alu 28 307 -5 294 248 277 59 chr1 178777070 178777269 -63887084 - Charlie8 DNA MER1_type -1982 435 146 358 307 31 0 chr1 178777287 178777414 -63886939 - L1ME LINE L1 -437 5684 5554 325 288 80 40 chr1 178777471 178777596 -63886757 - L1ME LINE L1 -714 5450 5321 230 212 95 79 chr1 178777603 178777791 -63886562 - L1ME4a LINE L1 -7 6114 5919 2214 68 4 0 chr1 178777791 178778102 -63886251 + AluY SINE Alu 1 312 0 230 212 95 79 chr1 178778102 178778153 -63886200 - L1ME4a LINE L1 -202 5919 5870 597 219 80 64 chr1 178778201 178778388 -63885965 - AluJo SINE Alu -6 306 117 516 218 84 73 chr1 178778388 178778663 -63885690 - L1ME4a LINE L1 -322 5799 5522 1062 229 102 58 chr1 178778675 178779183 -63885170 + MLT1G1 LTR MaLR 4 595 0 207 0 0 0 chr1 178779215 178779238 -63885115 + (CAT)n Simple_repeat Simple_repeat 2 24 0 306 285 134 29 chr1 178779342 178779619 -63884734 - MER57A LTR ERV1 0 403 99 459 176 66 0 chr1 178779619 178779710 -63884643 - LTR54 LTR ERV1 -411 99 3 439 236 146 0 chr1 178779817 178779940 -63884413 - MER96 DNA MER1_type? -34 141 1 2163 99 23 3 chr1 178780210 178780513 -63883840 - AluSg SINE Alu -1 309 1 493 218 127 7 chr1 178783061 178783203 -63881150 - MIR SINE MIR -84 178 20 201 351 126 0 chr1 178783607 178783718 -63880635 + L2 LINE L2 3180 3304 -9 286 325 41 0 chr1 178783748 178783871 -63880482 + L2 LINE L2 2934 3061 -211 221 258 163 53 chr1 178789502 178789711 -63874642 + L2 LINE L2 157 388 -2926 183 322 23 0 chr1 178790043 178790130 -63874223 + L2 LINE L2 1571 1659 -1655 851 280 228 25 chr1 178790189 178791135 -63873218 + L2 LINE L2 1796 3063 -250 1849 188 51 3 chr1 178791135 178791507 -63872846 + MLT1B LTR MaLR 1 390 0 851 280 228 25 chr1 178791507 178791807 -63872546 + L2 LINE L2 3063 3301 -12 185 220 120 40 chr1 178791789 178791889 -63872464 + L2 LINE L2 2871 2978 -335 * 352 274 113 0 chr1 178793052 178793158 -63871195 + MIR3 SINE MIR 85 202 -6 507 328 83 10 chr1 178793283 178793487 -63870866 + MIR SINE MIR 2 220 -42 24 0 0 0 chr1 178793845 178793869 -63870484 + GC_rich Low_complexity Low_complexity 1 24 0 228 67 0 0 chr1 178794413 178794443 -63869910 + (TG)n Simple_repeat Simple_repeat 1 30 0 410 320 77 13 chr1 178795130 178795364 -63868989 + MIR SINE MIR 12 260 -2 197 354 69 0 chr1 178796451 178796581 -63867772 + MIR SINE MIR 51 189 -73 572 263 26 27 chr1 178797338 178797565 -63866788 + MIR SINE MIR 15 241 -21 418 268 10 0 chr1 178797963 178798060 -63866293 + MIR SINE MIR 44 141 -67 220 235 0 0 chr1 178798255 178798306 -63866047 + MIR SINE MIR 182 232 -30 281 329 12 0 chr1 178798729 178798814 -63865539 + L3 LINE CR1 1411 1496 -81 265 314 137 0 chr1 178798808 178798910 -63865443 + L2 LINE L2 3155 3270 -2 * 210 71 0 0 chr1 178802349 178802377 -63861976 + (TAA)n Simple_repeat Simple_repeat 2 29 0 283 280 43 11 chr1 178802379 178802472 -63861881 + MIR SINE MIR 157 252 -10 2181 104 0 3 chr1 178802493 178802792 -63861561 + AluY SINE Alu 1 298 -13 2152 130 3 0 chr1 178802798 178803105 -63861248 + AluSq SINE Alu 1 308 -5 423 282 30 23 chr1 178803114 178803245 -63861108 - MIR SINE MIR -118 144 13 336 329 66 20 chr1 178803755 178803907 -63860446 - MIR SINE MIR -15 247 89 422 242 0 11 chr1 178804035 178804126 -63860227 + MIR SINE MIR 20 109 -153 2287 88 40 0 chr1 178804780 178805076 -63859277 + AluSq SINE Alu 1 308 -5 342 202 30 81 chr1 178805305 178805404 -63858949 - MIR3 SINE MIR -1 207 114 251 83 0 21 chr1 178805408 178805456 -63858897 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 2175 112 0 13 chr1 178805753 178806057 -63858296 + AluSx SINE Alu 1 300 -12 186 284 40 40 chr1 178806064 178806138 -63858215 + L3 LINE CR1 84 157 -1420 247 209 115 135 chr1 178808013 178808123 -63856230 + MIR SINE MIR 2 110 -152 2150 102 3 24 chr1 178808123 178808418 -63855935 - AluSg SINE Alu -2 308 20 247 209 115 135 chr1 178808418 178808455 -63855898 + MIR SINE MIR 110 146 -116 206 269 77 0 chr1 178808597 178808649 -63855704 + L2 LINE L2 3258 3313 0 591 291 76 24 chr1 178809290 178809500 -63854853 + MIR SINE MIR 12 232 -30 898 156 7 0 chr1 178810046 178810181 -63854172 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr1 178810181 178810202 -63854151 + AT_rich Low_complexity Low_complexity 1 21 0 2290 108 3 0 chr1 178810489 178810784 -63853569 + AluSx SINE Alu 1 296 -16 183 243 0 0 chr1 178811600 178811637 -63852716 + L2 LINE L2 2703 2739 -575 369 211 53 88 chr1 178813740 178813900 -63850453 - MIR SINE MIR -58 150 36 551 255 78 29 chr1 178814552 178814795 -63849558 - MER112 DNA MER1_type -1 255 1 1907 155 110 45 chr1 178818158 178818557 -63845796 + MSTB LTR MaLR 1 425 -1 219 318 126 7 chr1 178819464 178819615 -63844738 + L2 LINE L2 2681 2849 -465 496 181 94 35 chr1 178819616 178819787 -63844566 + MER57-int LTR ERV1 1743 1923 -3013 * 5228 186 83 78 chr1 178819785 178820538 -63843815 + MER57-int LTR ERV1 1554 2302 -4029 1809 169 6 19 chr1 178820538 178820852 -63843501 - AluJo SINE Alu 0 312 3 5228 186 83 78 chr1 178820852 178822114 -63842239 + MER57-int LTR ERV1 2302 3557 -2774 275 0 29 0 chr1 178822114 178822149 -63842204 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 548 123 0 0 chr1 178822149 178822222 -63842131 - AluSg/x SINE Alu -32 277 205 5228 186 83 78 chr1 178822222 178822849 -63841504 + MER57-int LTR ERV1 3556 5820 -511 2091 210 59 16 chr1 178822897 178823443 -63840910 + MER57-int LTR ERV1 4175 7143 -394 1321 141 60 6 chr1 178823444 178823869 -63840484 + LTR54 LTR ERV1 1 510 0 363 276 138 0 chr1 178824294 178824446 -63839907 + MIR3 SINE MIR 17 189 -19 183 261 130 14 chr1 178824903 178824972 -63839381 - L2 LINE L2 -25 3288 3212 185 242 141 50 chr1 178824997 178825096 -63839257 + L2 LINE L2 2879 2986 -286 188 220 200 73 chr1 178825161 178825311 -63839042 + MIR SINE MIR 81 249 -13 223 303 45 22 chr1 178827106 178827195 -63837158 + MIR SINE MIR 172 262 0 23 54 0 0 chr1 178828091 178828128 -63836225 + GC_rich Low_complexity Low_complexity 1 37 0 192 179 0 0 chr1 178828335 178828374 -63835979 + (CAG)n Simple_repeat Simple_repeat 2 40 0 184 26 0 103 chr1 178828498 178828537 -63835816 + (CCCCCG)n Simple_repeat Simple_repeat 1 35 0 22 70 0 0 chr1 178828552 178828595 -63835758 + GC_rich Low_complexity Low_complexity 1 43 0 600 267 131 4 chr1 178829425 178829661 -63834692 - L2 LINE L2 0 3313 3048 1557 306 108 11 chr1 178829661 178830292 -63834061 - MER115 DNA AcHobo 0 693 2 321 267 0 12 chr1 178830293 178830379 -63833974 - L2 LINE L2 -277 3036 2952 272 155 28 70 chr1 178831398 178831469 -63832884 - MIR SINE MIR -43 219 152 859 305 105 16 chr1 178831908 178832357 -63831996 - LTR33 LTR ERVL 0 521 33 376 265 20 31 chr1 178832565 178832663 -63831690 - MIR3 SINE MIR -47 161 65 316 39 0 39 chr1 178832804 178832856 -63831497 + (CA)n Simple_repeat Simple_repeat 1 50 0 260 138 17 69 chr1 178833503 178833561 -63830792 + MIR SINE MIR 91 145 -63 2233 132 0 19 chr1 178833725 178834043 -63830310 - AluSx SINE Alu 0 312 1 234 31 0 0 chr1 178834334 178834366 -63829987 + Alu SINE Alu 260 291 -8 450 252 2 1 chr1 178834390 178834520 -63829833 - L1ME1 LINE L1 -1 6117 5980 1993 138 7 7 chr1 178834520 178834816 -63829537 + AluSx SINE Alu 1 296 -16 2131 191 33 96 chr1 178834824 178835243 -63829110 - L1ME1 LINE L1 -582 5516 5072 1812 170 0 6 chr1 178835243 178835555 -63828798 - AluSx SINE Alu -2 310 1 2131 191 33 96 chr1 178835555 178835706 -63828647 - L1ME1 LINE L1 -1026 5072 4913 1908 157 13 3 chr1 178835706 178836011 -63828342 - AluJo SINE Alu -4 308 1 2131 191 33 96 chr1 178836011 178836359 -63827994 - L1ME1 LINE L1 -1185 4913 4657 * 2253 144 174 2 chr1 178836346 178836812 -63827541 - L1MB7 LINE L1 -16 6168 5623 2232 106 0 0 chr1 178836817 178837133 -63827220 - AluSq SINE Alu 0 316 1 568 196 19 44 chr1 178837159 178837317 -63827036 - L1ME1 LINE L1 -1428 4652 4499 25 31 0 0 chr1 178837325 178837357 -63826996 + AT_rich Low_complexity Low_complexity 1 32 0 281 301 136 0 chr1 178838104 178838207 -63826146 - MLT1K LTR MaLR -343 245 129 2035 133 7 10 chr1 178839147 178839449 -63824904 + AluJo SINE Alu 1 301 -11 247 314 43 14 chr1 178839591 178839661 -63824692 - L2 LINE L2 -21 3251 3180 477 179 54 9 chr1 178839817 178839929 -63824424 + MER69 DNA AcHobo 2365 2481 -45 273 298 163 0 chr1 178840004 178840182 -63824171 - L2 LINE L2 -72 3241 3035 2351 107 0 0 chr1 178840231 178840522 -63823831 - AluSx SINE Alu -21 291 1 252 255 163 26 chr1 178840677 178840830 -63823523 + L2 LINE L2 2713 2886 -428 1280 193 86 94 chr1 178841423 178841838 -63822515 - MLT1C LTR MaLR -5 462 50 2076 137 0 17 chr1 178841838 178842138 -63822215 - AluJb SINE Alu -13 299 5 1280 193 86 94 chr1 178842138 178842188 -63822165 - MLT1C LTR MaLR -417 50 1 1117 205 58 26 chr1 178842221 178842533 -63821820 - MER2 DNA MER2_type -23 322 1 208 296 92 31 chr1 178842536 178842634 -63821719 + L2 LINE L2 3002 3105 -208 1500 239 52 42 chr1 178842733 178842872 -63821481 - L1ME1 LINE L1 -3215 2865 2729 1598 200 3 28 chr1 178842872 178843192 -63821161 - AluJo SINE Alu 0 312 1 1500 239 52 42 chr1 178843192 178843470 -63820883 - L1ME1 LINE L1 -3351 2729 2438 2445 78 0 31 chr1 178843470 178843791 -63820562 - AluY SINE Alu 0 311 1 1500 239 52 42 chr1 178843791 178843970 -63820383 - L1ME1 LINE L1 -3642 2438 2262 308 309 9 64 chr1 178844047 178844157 -63820196 + L1MC4 LINE L1 6616 6719 -1323 * 332 300 44 0 chr1 178844075 178844165 -63820188 - L1MC4 LINE L1 -1334 6708 6615 383 256 35 0 chr1 178844170 178844256 -63820097 - L1MC4 LINE L1 -1339 6703 6615 305 309 21 31 chr1 178844227 178844324 -63820029 + L1MC4 LINE L1 6614 6709 -1333 * 210 71 0 0 chr1 178844328 178844356 -63819997 + (TA)n Simple_repeat Simple_repeat 1 28 0 906 248 49 41 chr1 178844358 178844722 -63819631 - L1ME1 LINE L1 -3814 2281 1941 1091 162 9 57 chr1 178844722 178844951 -63819402 + MER20 DNA MER1_type 1 218 -1 906 248 49 41 chr1 178844951 178845094 -63819259 - L1ME1 LINE L1 -4154 1941 1801 703 166 97 6 chr1 178845126 178845301 -63819052 + MER58A DNA MER1_type 34 224 0 2563 268 72 58 chr1 178845301 178846960 -63817393 - L1ME1 LINE L1 -4452 1809 77 387 0 0 0 chr1 178846960 178847003 -63817350 + (TG)n Simple_repeat Simple_repeat 2 44 0 2563 268 72 58 chr1 178847003 178847078 -63817275 - L1ME1 LINE L1 -6184 77 5 1220 169 14 5 chr1 178847284 178847491 -63816862 + MER63A DNA MER1_type 1 209 -1 1832 158 14 7 chr1 178847712 178848004 -63816349 - AluJo SINE Alu -18 294 1 876 281 73 97 chr1 178848005 178848458 -63815895 + LTR47B LTR ERVL 11 443 0 21 0 0 0 chr1 178848565 178848586 -63815767 + AT_rich Low_complexity Low_complexity 1 21 0 2381 83 3 0 chr1 178848940 178849228 -63815125 - AluSg SINE Alu -16 294 6 196 323 42 40 chr1 178849618 178849730 -63814623 + MIR SINE MIR 2 116 -92 207 0 0 0 chr1 178849793 178849816 -63814537 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1750 167 14 18 chr1 178849818 178850100 -63814253 - AluJo SINE Alu -31 281 1 1153 269 121 31 chr1 178850858 178851535 -63812818 + L2 LINE L2 1296 2033 -1281 1931 261 77 17 chr1 178851548 178852123 -63812230 - MLT1E2 LTR MaLR -15 611 3 926 303 50 52 chr1 178852128 178852312 -63812041 + L2 LINE L2 2035 2218 -1096 1545 151 104 7 chr1 178852312 178852590 -63811763 + AluJb SINE Alu 6 310 -2 926 303 50 52 chr1 178852590 178852844 -63811509 + L2 LINE L2 2218 2472 -842 2348 93 3 3 chr1 178852845 178853147 -63811206 - AluSx SINE Alu -10 302 1 251 269 20 97 chr1 178853247 178853562 -63810791 + L2 LINE L2 3003 3269 -44 361 304 105 33 chr1 178853775 178853956 -63810397 - MIR SINE MIR -2 260 67 1405 267 124 22 chr1 178853956 178854585 -63809768 + MER115 DNA AcHobo 1 693 0 301 242 32 0 chr1 178854866 178854928 -63809425 + MIR SINE MIR 49 112 -150 2578 62 0 3 chr1 178855417 178855724 -63808629 - AluY SINE Alu -5 306 1 642 267 78 18 chr1 178856141 178856358 -63807995 + MIR SINE MIR 32 261 -1 550 266 86 7 chr1 178856737 178856917 -63807436 + MIR SINE MIR 20 211 -51 2430 85 0 3 chr1 178856962 178857269 -63807084 - AluSx SINE Alu -6 306 1 1180 253 223 20 chr1 178858083 178858632 -63805721 + L2 LINE L2 2392 2828 -485 2475 75 0 0 chr1 178858632 178858938 -63805415 + AluY SINE Alu 1 306 -5 1180 253 223 20 chr1 178858938 178859160 -63805193 + L2 LINE L2 2828 3313 0 253 243 86 0 chr1 178859721 178859791 -63804562 + MLT1L LTR MaLR 214 289 -326 26 82 0 0 chr1 178859840 178859901 -63804452 + AT_rich Low_complexity Low_complexity 1 61 0 251 277 62 39 chr1 178859909 178860039 -63804314 + MLT1L LTR MaLR 258 390 -225 1368 155 67 49 chr1 178860629 178860913 -63803440 - AluJo SINE Alu -23 289 1 23 0 0 0 chr1 178861091 178861114 -63803239 + AT_rich Low_complexity Low_complexity 1 23 0 1797 96 0 4 chr1 178861299 178861529 -63802824 - AluSx SINE Alu -83 229 1 465 165 33 55 chr1 178861639 178861730 -63802623 + AluS SINE Alu 2 90 -223 1105 90 14 0 chr1 178862808 178862953 -63801400 + AluSq SINE Alu 153 299 -14 596 38 13 0 chr1 178863459 178863538 -63800815 + (CA)n Simple_repeat Simple_repeat 2 81 0 2125 109 36 13 chr1 178863662 178863965 -63800388 + AluSx SINE Alu 1 310 -2 1131 157 8 63 chr1 178864030 178864391 -63799962 - MLT2D LTR ERVL 0 414 1 464 210 169 0 chr1 178864422 178864546 -63799807 - HAL1 LINE L1 -292 2215 2071 1530 139 13 0 chr1 178864552 178864789 -63799564 - AluSg/x SINE Alu 0 310 71 3211 236 151 36 chr1 178864900 178865284 -63799069 - HAL1 LINE L1 -612 1895 1556 2111 121 14 7 chr1 178865284 178865581 -63798772 - AluSg SINE Alu -11 299 1 3211 236 151 36 chr1 178865581 178866600 -63797753 - HAL1 LINE L1 -951 1556 331 3031 141 73 53 chr1 178867227 178867816 -63796537 - MER7C DNA MER2_type -1 601 1 309 247 0 65 chr1 178867961 178868038 -63796315 + L2 LINE L2 3218 3289 -24 1791 148 20 30 chr1 178868046 178868343 -63796010 - AluJb SINE Alu -18 294 1 431 344 32 0 chr1 178868946 178869071 -63795282 + L2 LINE L2 3144 3272 0 25 31 0 0 chr1 178871957 178871989 -63792364 + AT_rich Low_complexity Low_complexity 1 32 0 2320 169 55 5 chr1 178873509 178873906 -63790447 - MER47B DNA MER2_type -1 417 1 2230 108 3 0 chr1 178874211 178874518 -63789835 + AluSx SINE Alu 1 308 -4 2319 87 7 3 chr1 178874728 178875027 -63789326 + AluSg SINE Alu 1 300 -10 465 169 228 29 chr1 178875277 178875413 -63788940 - MER103 DNA DNA -1 165 3 945 154 6 13 chr1 178875636 178875792 -63788561 - AluSg/x SINE Alu -21 291 137 261 0 0 0 chr1 178876285 178876314 -63788039 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 462 299 139 10 chr1 178876332 178876473 -63787880 + L3 LINE CR1 381 555 -1022 2196 75 18 4 chr1 178876473 178876754 -63787599 - AluSx SINE Alu -27 285 1 462 299 139 10 chr1 178876754 178876806 -63787547 + L3 LINE CR1 555 599 -978 270 253 163 6 chr1 178876838 178877004 -63787349 + L2 LINE L2 3108 3299 -14 666 289 197 6 chr1 178877028 178877384 -63786969 + L3 LINE CR1 604 1027 -550 928 203 0 0 chr1 178877414 178877577 -63786776 + FRAM SINE Alu 1 163 -13 314 316 209 4 chr1 178877600 178877844 -63786509 + L3 LINE CR1 1084 1377 -200 1040 142 170 5 chr1 178878421 178878639 -63785714 + L1 LINE L1 3786 4039 -2107 1773 224 229 3 chr1 178878639 178879246 -63785107 - L2 LINE L2 -953 2361 1618 26 30 0 0 chr1 178879374 178879407 -63784946 + AT_rich Low_complexity Low_complexity 1 33 0 524 259 104 31 chr1 178879424 178879617 -63784736 - MIR SINE MIR -53 209 3 252 212 22 0 chr1 178880062 178880199 -63784154 + (TA)n Simple_repeat Simple_repeat 2 141 0 32 57 0 0 chr1 178880199 178880252 -63784101 + AT_rich Low_complexity Low_complexity 1 53 0 572 235 94 42 chr1 178880336 178880652 -63783701 + L1MEd LINE L1 1075 1474 -4836 3333 155 27 62 chr1 178880652 178881286 -63783067 + LTR9 LTR ERV1 1 612 0 572 235 94 42 chr1 178881286 178881408 -63782945 + L1MEd LINE L1 1474 1588 -4722 22 80 0 0 chr1 178881509 178881559 -63782794 + AT_rich Low_complexity Low_complexity 1 50 0 748 113 258 65 chr1 178881656 178881709 -63782644 + MER21A LTR ERV1 43 84 -847 2439 86 0 0 chr1 178881709 178882010 -63782343 + AluSx SINE Alu 1 301 -11 748 113 258 65 chr1 178882010 178882142 -63782211 + MER21A LTR ERV1 84 264 -667 2869 150 59 37 chr1 178882147 178882686 -63781667 + MER21A LTR ERV1 376 926 -5 1703 60 28 0 chr1 178883160 178883377 -63780976 + THE1A LTR MaLR 1 223 -132 390 274 126 39 chr1 178883377 178883632 -63780721 + L2 LINE L2 2999 3275 -38 457 219 0 38 chr1 178883866 178883971 -63780382 + MIR SINE MIR 92 192 -70 281 214 0 57 chr1 178883981 178884051 -63780302 + MIR SINE MIR 127 192 -70 2329 106 0 0 chr1 178884061 178884364 -63779989 + AluSx SINE Alu 3 305 -7 583 244 204 20 chr1 178884680 178884881 -63779472 - MIR SINE MIR -2 260 23 1776 173 0 11 chr1 178885501 178885785 -63778568 + AluJb SINE Alu 1 281 -31 213 39 0 0 chr1 178885788 178885814 -63778539 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2355 97 7 0 chr1 178885877 178886187 -63778166 + AluSp SINE Alu 2 313 0 1203 228 23 0 chr1 178886790 178887009 -63777344 - MER58A DNA MER1_type 0 224 1 633 206 163 0 chr1 178887158 178887299 -63777054 + MER5A DNA MER1_type 26 189 0 243 317 125 0 chr1 178887798 178887902 -63776451 - L2 LINE L2 0 3313 3197 216 0 0 0 chr1 178888118 178888142 -63776211 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 829 169 58 13 chr1 178892088 178892242 -63772111 - FRAM SINE Alu -18 158 1 1769 193 7 0 chr1 178892301 178892596 -63771757 - AluJb SINE Alu -15 297 1 1499 153 0 114 chr1 178892803 178893155 -63771198 + AluJo SINE Alu 1 312 0 200 313 61 73 chr1 178893516 178893570 -63770783 + L2 LINE L2 1293 1346 -1968 2787 23 0 0 chr1 178893570 178893880 -63770473 - AluY SINE Alu -1 310 1 200 313 61 73 chr1 178893880 178894071 -63770282 + L2 LINE L2 1346 1535 -1779 288 343 229 24 chr1 178894246 178894545 -63769808 + L2 LINE L2 2138 2374 -940 2329 91 3 0 chr1 178894545 178894841 -63769512 - AluSg SINE Alu -13 297 1 288 343 229 24 chr1 178894841 178895052 -63769301 + L2 LINE L2 2374 2753 -561 183 80 0 0 chr1 178895268 178895293 -63769060 + (TAA)n Simple_repeat Simple_repeat 2 26 0 534 254 71 30 chr1 178895320 178895489 -63768864 - MIR SINE MIR -44 218 43 593 292 32 55 chr1 178895886 178896198 -63768155 - L1ME LINE L1 -305 5816 5512 25 51 0 0 chr1 178896254 178896293 -63768060 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr1 178896602 178896645 -63767708 + AT_rich Low_complexity Low_complexity 1 43 0 276 219 0 94 chr1 178897198 178897294 -63767059 + L2 LINE L2 3227 3313 0 201 74 0 0 chr1 178897582 178897609 -63766744 + (TA)n Simple_repeat Simple_repeat 2 28 0 674 278 86 8 chr1 178898066 178898300 -63766053 + MIR SINE MIR 6 257 -5 584 284 23 51 chr1 178898337 178898552 -63765801 + L3 LINE CR1 1316 1524 -53 2149 101 3 20 chr1 178899996 178900293 -63764060 - AluSx SINE Alu -20 292 1 2298 102 0 3 chr1 178900309 178900612 -63763741 - AluSq SINE Alu -11 302 1 2363 93 0 0 chr1 178900620 178900920 -63763433 - AluSc SINE Alu -9 300 1 628 231 30 47 chr1 178901139 178901308 -63763045 + MIR3 SINE MIR 36 201 -7 21 82 0 0 chr1 178901443 178901492 -63762861 + AT_rich Low_complexity Low_complexity 1 49 0 983 147 19 6 chr1 178901718 178901874 -63762479 - FAM SINE Alu -17 168 11 37 39 0 0 chr1 178901886 178901937 -63762416 + AT_rich Low_complexity Low_complexity 1 51 0 2385 86 0 0 chr1 178901942 178902246 -63762107 + AluY SINE Alu 1 304 -7 28 29 0 0 chr1 178903810 178903845 -63760508 + AT_rich Low_complexity Low_complexity 1 35 0 1219 173 0 0 chr1 178903993 178904184 -63760169 + AluSx SINE Alu 3 193 -119 1508 169 38 8 chr1 178904831 178905092 -63759261 + Tigger3(Golem) DNA MER2_type 2761 3029 0 417 291 13 29 chr1 178905102 178905273 -63759080 + L1MC/D LINE L1 5670 5839 -303 2322 86 0 25 chr1 178905438 178905753 -63758600 + AluSx SINE Alu 1 307 -5 412 259 130 37 chr1 178905759 178905975 -63758378 + L2 LINE L2 3078 3313 0 244 243 86 0 chr1 178906536 178906606 -63757747 + MLT1L LTR MaLR 214 289 -326 26 82 0 0 chr1 178906655 178906716 -63757637 + AT_rich Low_complexity Low_complexity 1 61 0 237 277 62 39 chr1 178906724 178906854 -63757499 + MLT1L LTR MaLR 258 390 -225 1396 155 63 59 chr1 178907423 178907726 -63756627 - AluJo SINE Alu -6 306 3 23 0 0 0 chr1 178907906 178907929 -63756424 + AT_rich Low_complexity Low_complexity 1 23 0 1735 100 0 9 chr1 178908114 178908345 -63756008 - AluSx SINE Alu -83 229 1 1833 268 81 78 chr1 178909221 178909402 -63754951 - L1M4 LINE L1 -1299 4847 4668 2132 119 3 0 chr1 178909402 178909697 -63754656 - AluSq SINE Alu -17 296 1 1833 268 81 78 chr1 178909697 178909857 -63754496 - L1M4 LINE L1 -1478 4668 4510 1869 151 30 0 chr1 178909857 178910155 -63754198 - AluJb SINE Alu -3 309 3 1833 268 81 78 chr1 178910155 178910753 -63753600 - L1M4 LINE L1 -1636 4510 3915 1888 154 0 0 chr1 178910753 178911025 -63753328 - AluJb SINE Alu -23 289 18 1833 268 81 78 chr1 178911025 178911578 -63752775 - L1M4 LINE L1 -2231 3915 3346 1999 117 13 17 chr1 178911578 178911876 -63752477 - AluSx SINE Alu -15 297 1 1833 268 81 78 chr1 178911876 178911931 -63752422 - L1M4 LINE L1 -2800 3346 3293 1628 160 64 4 chr1 178911963 178912244 -63752109 - AluJo SINE Alu -14 298 1 216 264 0 0 chr1 178913544 178913597 -63750756 + A-rich Low_complexity Low_complexity 5 57 0 359 184 58 69 chr1 178915822 178915909 -63748444 + FLAM_A SINE Alu 37 122 -11 244 285 138 16 chr1 178916023 178916146 -63748207 + L2 LINE L2 3176 3313 0 2086 118 3 3 chr1 178917170 178917466 -63746887 - AluSq SINE Alu -17 296 1 22 0 0 0 chr1 178918230 178918252 -63746101 + AT_rich Low_complexity Low_complexity 1 22 0 31 68 0 0 chr1 178918978 178919037 -63745316 + AT_rich Low_complexity Low_complexity 1 59 0 1634 140 88 18 chr1 178919101 178919373 -63744980 - AluJo SINE Alu -21 291 1 305 105 0 18 chr1 178919905 178919962 -63744391 + L1MB3 LINE L1 6121 6176 -7 230 151 38 0 chr1 178920907 178920960 -63743393 + L1MC4 LINE L1 7983 8037 -5 346 109 0 0 chr1 178921051 178921097 -63743256 - Alu SINE Alu -12 290 245 26 50 0 0 chr1 178921379 178921419 -63742934 + AT_rich Low_complexity Low_complexity 1 40 0 21 71 0 0 chr1 178921485 178921527 -63742826 + AT_rich Low_complexity Low_complexity 1 42 0 316 326 56 44 chr1 178921636 178921906 -63742447 - L1ME LINE L1 -343 5778 5506 1871 140 11 4 chr1 178922025 178922303 -63742050 + AluJb SINE Alu 1 280 -32 261 0 0 0 chr1 178922303 178922332 -63742021 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 28 48 0 0 chr1 178922690 178922732 -63741621 + AT_rich Low_complexity Low_complexity 1 42 0 1577 148 47 54 chr1 178922850 178923148 -63741205 - AluJo SINE Alu -12 300 5 236 233 0 67 chr1 178923160 178923250 -63741103 - L1MC/D LINE L1 -2061 5747 5664 413 216 33 105 chr1 178923268 178923421 -63740932 + Charlie1a DNA MER1_type 2 143 -1312 486 133 31 20 chr1 178923431 178923529 -63740824 - Charlie1a DNA MER1_type -201 1254 1156 3308 214 64 11 chr1 178923532 178924325 -63740028 - Charlie1a DNA MER1_type -613 842 8 230 146 0 55 chr1 178924508 178924563 -63739790 + L1MB5 LINE L1 6113 6164 -10 260 195 0 0 chr1 178925151 178925192 -63739161 + MER33 DNA MER1_type 1 41 -283 * 470 195 11 0 chr1 178925176 178925263 -63739090 - MER3 DNA MER1_type -121 88 1 279 326 22 29 chr1 178925368 178925506 -63738847 - L1MC/D LINE L1 -495 5675 5539 307 286 66 86 chr1 178925807 178926111 -63738242 + L1M4 LINE L1 677 974 -5410 2361 93 0 7 chr1 178926118 178926428 -63737925 + AluSq SINE Alu 1 308 -5 587 272 83 56 chr1 178926435 178926759 -63737594 + L1M4 LINE L1 1105 1419 -5144 1805 145 32 3 chr1 178926759 178927042 -63737311 + AluJb SINE Alu 3 293 -19 587 272 83 56 chr1 178927042 178927421 -63736932 + L1M4 LINE L1 1419 1864 -4699 326 211 22 0 chr1 178927438 178927528 -63736825 + L1M4 LINE L1 5385 5476 -906 25 65 0 0 chr1 178927576 178927622 -63736731 + AT_rich Low_complexity Low_complexity 1 46 0 2164 77 27 3 chr1 178927674 178927972 -63736381 + AluY SINE Alu 1 305 -6 401 242 137 0 chr1 178928127 178928251 -63736102 - MIR SINE MIR -3 259 119 722 250 0 0 chr1 178928357 178928493 -63735860 - MIR SINE MIR -120 142 7 192 255 122 41 chr1 178929327 178929425 -63734928 - L2 LINE L2 -812 2502 2397 224 352 62 51 chr1 178930005 178930181 -63734172 - L2 LINE L2 -457 2857 2680 266 270 63 13 chr1 178930692 178930851 -63733502 + L1M LINE L1 5262 5428 -693 4913 203 53 94 chr1 178930895 178931097 -63733256 - L1MD3 LINE L1 -744 5402 5193 856 143 0 0 chr1 178931097 178931230 -63733123 + FLAM_C SINE Alu 1 133 0 4913 203 53 94 chr1 178931230 178932141 -63732212 - L1MD3 LINE L1 -953 5193 4246 230 128 0 26 chr1 178932141 178932180 -63732173 + tRNA-Tyr-TAC tRNA tRNA 1 38 -38 4913 203 53 94 chr1 178932180 178932740 -63731613 - L1MD3 LINE L1 -1900 4246 5301 2302 111 0 6 chr1 178932740 178933055 -63731298 - AluSq SINE Alu 0 313 1 4913 203 53 94 chr1 178933055 178933309 -63731044 - L1MD3 LINE L1 -844 5302 5039 20419 47 49 48 chr1 178933472 178936353 -63728000 - L1P LINE L1 -3264 2882 1 2201 85 4 0 chr1 178936354 178936626 -63727727 - AluSg SINE Alu -19 291 19 2539 148 100 29 chr1 178936626 178937114 -63727239 - MER44D DNA MER2_type -27 578 1 517 303 46 68 chr1 178937582 178937863 -63726490 + L2 LINE L2 2992 3266 -6 400 370 20 13 chr1 178938938 178939241 -63725112 - L1PA12 LINE L1 -7276 305 1 1968 187 30 105 chr1 178939241 178939435 -63724918 - MLT2B1 LTR ERVL -55 465 258 414 0 0 0 chr1 178939435 178939481 -63724872 + (ATG)n Simple_repeat Simple_repeat 3 48 0 1968 187 30 105 chr1 178939481 178939789 -63724564 - MLT2B1 LTR ERVL -262 258 1 2131 157 22 0 chr1 178940078 178940434 -63723919 + THE1B LTR MaLR 1 364 0 2265 59 5 131 chr1 178940434 178940822 -63723531 + THE1B-int LTR MaLR 1 339 -1241 508 371 20 5 chr1 178941644 178941846 -63722507 - MIR SINE MIR -12 250 46 281 318 180 11 chr1 178941885 178942074 -63722279 - L2 LINE L2 -541 2773 2553 245 214 54 0 chr1 178942295 178942351 -63722002 - MIR SINE MIR -114 148 90 1860 119 91 38 chr1 178943275 178943595 -63720758 + MER1B DNA MER1_type 1 337 0 303 256 26 68 chr1 178943772 178943889 -63720464 + L2 LINE L2 3161 3272 0 218 320 107 19 chr1 178944752 178944855 -63719498 - MIR3 SINE MIR -33 175 64 712 277 221 3 chr1 178944887 178945194 -63719159 - L2 LINE L2 -1 3312 2939 513 322 35 15 chr1 178945289 178945491 -63718862 + MIR SINE MIR 8 213 -49 236 296 52 26 chr1 178945887 178946002 -63718351 + LTR67 LTR ERVL 426 543 -14 189 299 196 0 chr1 178946514 178946611 -63717742 - MIR SINE MIR -145 117 2 2067 120 3 7 chr1 178947735 178948027 -63716326 + AluSc SINE Alu 1 291 -18 264 354 85 69 chr1 178948400 178948719 -63715634 - L2 LINE L2 -8 3264 2941 747 294 104 2 chr1 178948759 178949160 -63715193 + L2 LINE L2 2693 3149 -164 1852 70 0 0 chr1 178949221 178949463 -63714890 - L1PA6 LINE L1 -1 6153 5912 1173 28 35 0 chr1 178949700 178949844 -63714509 - L1PA6 LINE L1 -1 6153 6005 680 365 35 6 chr1 178950017 178950362 -63713991 - L3 LINE CR1 -11 1566 1212 355 319 76 45 chr1 178950404 178950826 -63713527 - MLT1J1 LTR MaLR -35 476 1 611 341 40 9 chr1 178951403 178951629 -63712724 - MIR SINE MIR -12 250 18 204 418 0 0 chr1 178951686 178951753 -63712600 - L2 LINE L2 -6 3307 3241 410 307 122 16 chr1 178951767 178951956 -63712397 + L2 LINE L2 1372 1580 -1734 310 256 0 0 chr1 178952098 178952176 -63712177 + L1MB8 LINE L1 6099 6176 -2 318 394 44 0 chr1 178952751 178952931 -63711422 + MIR SINE MIR 20 207 -55 307 336 26 17 chr1 178953486 178953602 -63710751 - MIR3 SINE MIR -49 159 43 749 249 75 30 chr1 178953602 178954008 -63710345 + MLT1J LTR MaLR 1 467 -44 228 260 58 77 chr1 178954149 178954253 -63710100 - L2 LINE L2 -2 3311 3210 946 297 106 23 chr1 178954399 178954880 -63709473 + LTR33 LTR ERVL 1 521 0 1223 272 57 22 chr1 179005050 179005418 -63658935 - L2 LINE L2 -1450 1864 1484 611 298 30 0 chr1 179005455 179005623 -63658730 - MIR SINE MIR -87 175 3 310 308 80 19 chr1 179005730 179005858 -63658495 + MIR SINE MIR 7 141 -67 3722 139 62 69 chr1 179006583 179007179 -63657174 - L1MB7 LINE L1 -21 6163 5573 2104 140 0 0 chr1 179007179 179007486 -63656867 - AluSx SINE Alu 0 312 6 3722 139 62 69 chr1 179007486 179007682 -63656671 - L1MB7 LINE L1 -611 5573 5377 2186 123 0 0 chr1 179008124 179008426 -63655927 + AluSx SINE Alu 1 302 -10 345 259 59 37 chr1 179009612 179009747 -63654606 - L2 LINE L2 -15 3298 3161 28 0 0 0 chr1 179010292 179010320 -63654033 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr1 179010712 179010745 -63653608 + AT_rich Low_complexity Low_complexity 1 33 0 2273 114 10 0 chr1 179011076 179011383 -63652970 + AluSx SINE Alu 1 310 -2 454 236 106 8 chr1 179011984 179012107 -63652246 - MER5A DNA MER1_type -1 188 54 1974 85 0 11 chr1 179012119 179012389 -63651964 - AluY SINE Alu -12 299 33 1085 109 73 0 chr1 179013151 179013343 -63651010 + L1MA8 LINE L1 6081 6286 -5 180 0 0 0 chr1 179014053 179014073 -63650280 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 2094 97 3 14 chr1 179014073 179014361 -63649992 - AluSx SINE Alu -27 285 1 615 191 95 0 chr1 179014502 179014628 -63649725 + MER33 DNA MER1_type 8 145 -179 336 197 0 13 chr1 179014626 179014702 -63649651 + MER33 DNA MER1_type 250 324 0 * 2080 142 0 0 chr1 179014927 179015238 -63649115 + AluJo SINE Alu 2 312 0 241 143 0 36 chr1 179015525 179015581 -63648772 + L1MC5 LINE L1 7860 7913 -48 191 339 0 17 chr1 179015597 179015656 -63648697 - L2 LINE L2 -12 3301 3244 1679 184 10 0 chr1 179016072 179016381 -63647972 + AluJo SINE Alu 1 312 0 301 333 122 61 chr1 179016676 179017430 -63646923 - L2 LINE L2 -527 2787 1988 1087 59 15 0 chr1 179017895 179018031 -63646322 + AluY SINE Alu 162 299 -12 508 103 143 8 chr1 179018565 179018691 -63645662 - Tigger3(Golem) DNA MER2_type -537 2492 2350 42 36 0 0 chr1 179018691 179018747 -63645606 + AT_rich Low_complexity Low_complexity 1 56 0 390 134 0 0 chr1 179018749 179018816 -63645537 - Tigger3(Golem) DNA MER2_type -2687 342 276 635 170 10 0 chr1 179018817 179018917 -63645436 - Tigger3(Golem) DNA MER2_type -2928 101 1 2742 135 46 6 chr1 179019020 179019523 -63644830 - L1MA5A LINE L1 -6 6291 5769 441 306 12 0 chr1 179019547 179019717 -63644636 - L1M4 LINE L1 -3776 2370 2199 * 6660 156 27 19 chr1 179019693 179021400 -63642953 - L1M2 LINE L1 -509 5788 4056 246 62 0 0 chr1 179021466 179021498 -63642855 + (TC)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr1 179021525 179021547 -63642806 + AT_rich Low_complexity Low_complexity 1 22 0 330 311 83 28 chr1 179021768 179022022 -63642331 + L1M4 LINE L1 2336 2603 -3543 1732 154 11 14 chr1 179022490 179022769 -63641584 + AluJb SINE Alu 11 288 -24 1073 231 80 23 chr1 179022830 179023181 -63641172 - L1ME3A LINE L1 -14 6156 5786 2101 116 0 0 chr1 179023556 179023850 -63640503 - AluSc SINE Alu -15 294 1 2289 92 0 0 chr1 179024004 179024296 -63640057 - AluSx SINE Alu -20 292 1 310 321 98 11 chr1 179024559 179024743 -63639610 + L1ME LINE L1 5272 5471 -2337 356 282 120 42 chr1 179024779 179024963 -63639390 + L1ME LINE L1 5553 5758 -363 2020 201 127 21 chr1 179024963 179025476 -63638877 - MLT1F1 LTR MaLR 0 567 1 356 282 120 42 chr1 179025476 179025507 -63638846 + L1ME LINE L1 5758 5785 -336 3900 159 34 33 chr1 179025743 179026269 -63638084 - L1MB3 LINE L1 -1 6182 5653 1958 135 55 25 chr1 179026269 179026633 -63637720 - THE1C LTR MaLR 0 375 1 3900 159 34 33 chr1 179026633 179026891 -63637462 - L1MB3 LINE L1 -530 5653 5397 758 281 29 37 chr1 179027353 179027595 -63636758 + L3 LINE CR1 1064 1303 -274 217 260 156 0 chr1 179027890 179027967 -63636386 - MER5A DNA MER1_type -2 187 99 226 62 69 62 chr1 179028170 179028300 -63636053 + (TA)n Simple_repeat Simple_repeat 2 132 0 1763 141 3 31 chr1 179028405 179028716 -63635637 + AluJb SINE Alu 1 303 0 1935 137 7 7 chr1 179028783 179029075 -63635278 + AluJo SINE Alu 9 300 -12 628 163 2 0 chr1 179029173 179029292 -63635061 - L1 LINE L1 -1955 4191 4072 1815 127 0 91 chr1 179029931 179030261 -63634092 + AluJb SINE Alu 1 300 -12 2052 97 17 0 chr1 179030668 179030957 -63633396 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr1 179031403 179031433 -63632920 + AT_rich Low_complexity Low_complexity 1 30 0 820 205 6 29 chr1 179031445 179031616 -63632737 - AluJo SINE Alu -141 171 5 1907 103 96 0 chr1 179032067 179032349 -63632004 - AluSg SINE Alu -1 309 1 441 0 0 0 chr1 179032412 179032429 -63631924 + (TG)n Simple_repeat Simple_repeat 1 66 0 441 0 0 0 chr1 179032429 179032478 -63631875 + (TG)n Simple_repeat Simple_repeat 2 50 0 295 304 30 30 chr1 179033797 179033932 -63630421 - L2 LINE L2 -955 2359 2225 1159 151 54 70 chr1 179034200 179034498 -63629855 - AluJb SINE Alu -8 294 2 358 284 169 16 chr1 179034673 179034856 -63629497 + L2 LINE L2 1929 2139 -1175 535 159 18 25 chr1 179034873 179035036 -63629317 + CT-rich Low_complexity Low_complexity 4 165 0 2050 267 92 41 chr1 179035086 179035860 -63628493 + L2 LINE L2 2156 2968 -346 6896 55 14 2 chr1 179036616 179037770 -63626583 - L1PA7 LINE L1 -13 6141 4985 432 0 0 0 chr1 179037835 179037883 -63626470 + (TG)n Simple_repeat Simple_repeat 2 49 0 274 274 32 83 chr1 179037883 179038040 -63626313 - L1MA10 LINE L1 -19 6315 6167 710 260 45 0 chr1 179038283 179038460 -63625893 + MIR SINE MIR 76 260 -2 466 288 0 65 chr1 179038612 179038751 -63625602 - L2 LINE L2 0 3272 3143 1975 139 24 0 chr1 179039023 179039317 -63625036 - AluSx SINE Alu -9 303 3 21 0 0 0 chr1 179040415 179040436 -63623917 + AT_rich Low_complexity Low_complexity 1 21 0 1816 175 0 25 chr1 179040599 179040919 -63623434 - AluJo SINE Alu 0 312 1 190 233 100 50 chr1 179041336 179041396 -63622957 - L2 LINE L2 -2 3270 3208 1357 123 9 14 chr1 179041457 179041669 -63622684 - AluSg/x SINE Alu -20 292 82 485 308 8 8 chr1 179042789 179042922 -63621431 - L2 LINE L2 -3 3310 3178 22 35 0 0 chr1 179043240 179043269 -63621084 + AT_rich Low_complexity Low_complexity 1 29 0 2497 112 54 3 chr1 179044640 179045032 -63619321 - Tigger2 DNA MER2_type 0 2718 2307 647 182 8 53 chr1 179045032 179045058 -63619295 - AluJo SINE Alu -153 159 133 2203 54 7 4 chr1 179045058 179045384 -63618969 - AluY SINE Alu 0 327 1 647 182 8 53 chr1 179045384 179045488 -63618865 - AluJo SINE Alu -179 133 34 2037 142 0 3 chr1 179046511 179046814 -63617539 - AluSx SINE Alu -10 302 1 819 256 83 8 chr1 179046862 179047104 -63617249 - MIR SINE MIR 0 262 3 1695 155 3 51 chr1 179047854 179048170 -63616183 - AluJo SINE Alu -11 301 1 729 252 126 44 chr1 179048477 179048701 -63615652 - L3 LINE CR1 -723 854 603 1711 169 13 7 chr1 179048701 179049009 -63615344 - AluSx SINE Alu -2 310 1 729 252 126 44 chr1 179049009 179049054 -63615299 - L3 LINE CR1 -974 603 563 413 262 74 37 chr1 179049500 179049744 -63614609 + L1ME4a LINE L1 5869 6121 0 24 77 0 0 chr1 179051036 179051088 -63613265 + AT_rich Low_complexity Low_complexity 1 52 0 2128 100 13 13 chr1 179051225 179051524 -63612829 + AluSx SINE Alu 3 301 -11 631 180 19 71 chr1 179052171 179052382 -63611971 + L1MC5 LINE L1 7725 7924 -37 851 224 15 35 chr1 179052814 179053015 -63611338 + MIR SINE MIR 4 200 -62 873 118 8 0 chr1 179053015 179053142 -63611211 + AluSg/x SINE Alu 176 303 -9 220 35 0 0 chr1 179053149 179053178 -63611175 + MIR SINE MIR 210 238 -24 525 238 114 42 chr1 179053411 179053604 -63610749 - MIR SINE MIR -1 261 55 24 0 0 0 chr1 179053964 179053988 -63610365 + AT_rich Low_complexity Low_complexity 1 24 0 280 214 83 12 chr1 179054555 179054639 -63609714 + MIR SINE MIR 73 162 -100 2192 91 3 0 chr1 179054643 179054939 -63609414 - AluSx SINE Alu -15 297 1 786 153 0 0 chr1 179055189 179055307 -63609046 + FLAM_C SINE Alu 1 118 -15 34 42 0 0 chr1 179055308 179055356 -63608997 + AT_rich Low_complexity Low_complexity 1 48 0 1179 269 102 27 chr1 179055517 179055929 -63608424 + LTR16A LTR ERVL 2 444 -6 819 255 148 0 chr1 179055975 179056191 -63608162 - MIR SINE MIR -10 252 5 1831 151 39 0 chr1 179056222 179056507 -63607846 - AluJb SINE Alu -14 298 3 230 265 44 0 chr1 179057155 179057176 -63607177 + MIR3 SINE MIR 127 146 -62 2400 75 3 3 chr1 179057176 179057483 -63606870 + AluSg SINE Alu 1 307 -3 230 265 44 0 chr1 179057483 179057529 -63606824 + MIR3 SINE MIR 146 197 -11 26 74 0 0 chr1 179058297 179058351 -63606002 + AT_rich Low_complexity Low_complexity 1 54 0 424 336 9 0 chr1 179058632 179058745 -63605608 - MIR SINE MIR -108 154 41 28 48 0 0 chr1 179058801 179058843 -63605510 + AT_rich Low_complexity Low_complexity 1 42 0 1948 159 23 0 chr1 179059011 179059312 -63605041 + AluJo SINE Alu 1 308 -4 2185 71 3 52 chr1 179059825 179060134 -63604219 - AluY SINE Alu -16 295 2 1972 209 46 70 chr1 179060709 179061277 -63603076 - MLT2B3 LTR ERVL 0 554 1 307 244 12 12 chr1 179061953 179062039 -63602314 - MER110-int LTR ERV1 -3332 3469 3384 1964 118 0 40 chr1 179062499 179062803 -63601550 - AluY SINE Alu -19 292 1 450 316 31 54 chr1 179062980 179063479 -63600874 - MER110-int LTR ERV1 -4063 4122 129 2024 241 39 15 chr1 179063945 179064644 -63599709 + L1M3f LINE L1 539 1249 -4097 427 341 45 11 chr1 179064816 179064995 -63599358 + MIR SINE MIR 30 214 -48 207 0 0 0 chr1 179066275 179066298 -63598055 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2243 102 0 7 chr1 179068172 179068475 -63595878 + AluSq SINE Alu 1 301 -12 1202 127 0 0 chr1 179068475 179068648 -63595705 + AluSg/x SINE Alu 132 304 -6 601 252 45 0 chr1 179068684 179068839 -63595514 - MLT1G1 LTR MaLR -2 593 432 1874 158 34 3 chr1 179068839 179069167 -63595186 + MLT2D LTR ERVL 1 338 -76 1021 264 46 64 chr1 179069186 179069622 -63594731 - MLT1G1 LTR MaLR -167 428 1 1733 116 97 0 chr1 179069812 179070098 -63594255 - AluSx SINE Alu 0 311 1 6924 18 0 0 chr1 179070448 179071239 -63593114 + L1PA2 LINE L1 5364 6154 -1 252 77 0 0 chr1 179071242 179071281 -63593072 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 54 29 0 0 chr1 179071580 179071648 -63592705 + AT_rich Low_complexity Low_complexity 1 68 0 1353 66 0 0 chr1 179071930 179072096 -63592257 - AluSc SINE Alu -12 297 132 2222 110 0 7 chr1 179072096 179072396 -63591957 - AluSp SINE Alu -15 298 1 378 267 41 0 chr1 179072442 179072588 -63591765 - L1ME LINE L1 -348 5822 5671 2494 48 0 0 chr1 179072717 179073012 -63591341 + AluY SINE Alu 1 295 -16 549 267 18 98 chr1 179073123 179073400 -63590953 - L1ME LINE L1 -525 5637 5383 1457 195 39 14 chr1 179073420 179073702 -63590651 + AluJo SINE Alu 1 289 -23 1757 170 21 0 chr1 179073707 179074042 -63590311 + AluJb SINE Alu 1 341 0 339 147 0 5 chr1 179074314 179074520 -63589833 + AluJo SINE Alu 1 300 -2 1797 141 12 0 chr1 179075266 179075542 -63588811 - AluSx SINE Alu 0 305 27 2085 128 30 0 chr1 179075589 179075885 -63588468 - AluJb SINE Alu -7 305 1 2304 108 0 0 chr1 179076247 179076543 -63587810 + AluSx SINE Alu 1 296 -16 1244 142 33 33 chr1 179076552 179076763 -63587590 + AluJb SINE Alu 83 293 -19 206 244 0 0 chr1 179076983 179077028 -63587325 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 182 163 93 23 chr1 179077507 179077550 -63586803 - L2 LINE L2 -5 3308 3263 247 197 106 0 chr1 179077572 179077638 -63586715 - MIR SINE MIR 0 262 190 1086 141 0 117 chr1 179077638 179077795 -63586558 - L1MB8 LINE L1 0 6178 6004 2330 78 14 0 chr1 179077795 179078090 -63586263 + AluSp SINE Alu 1 299 -14 2093 128 3 3 chr1 179078090 179078386 -63585967 + AluSx SINE Alu 1 296 -16 1086 141 0 117 chr1 179078386 179078517 -63585836 - L1MB8 LINE L1 -172 6006 5923 665 270 51 0 chr1 179078519 179078663 -63585690 - MIR SINE MIR -55 207 51 1947 156 0 3 chr1 179078663 179078965 -63585388 - AluSx SINE Alu -11 301 1 665 270 51 0 chr1 179078965 179078998 -63585355 - MIR SINE MIR -211 51 21 227 329 148 27 chr1 179079255 179079404 -63584949 - L2 LINE L2 -192 3080 2914 384 297 162 16 chr1 179079509 179079694 -63584659 - MIR SINE MIR -50 212 1 216 303 88 113 chr1 179080644 179080772 -63583581 + MIR SINE MIR 6 127 -135 2403 81 0 0 chr1 179080772 179081081 -63583272 - AluSg SINE Alu -1 309 1 216 303 88 113 chr1 179081081 179081190 -63583163 + MIR SINE MIR 127 237 -25 374 182 20 71 chr1 179081385 179081484 -63582869 - L2 LINE L2 -2 3311 3218 205 152 0 0 chr1 179082272 179082305 -63582048 + (CCG)n Simple_repeat Simple_repeat 3 35 0 348 336 0 10 chr1 179084235 179084339 -63580014 - MIR SINE MIR -52 210 108 26 30 0 0 chr1 179084380 179084413 -63579940 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr1 179084432 179084466 -63579887 + AT_rich Low_complexity Low_complexity 1 34 0 327 287 165 17 chr1 179084984 179085099 -63579254 + L2 LINE L2 3137 3268 -4 245 336 90 30 chr1 179085421 179085555 -63578798 - MIR3 SINE MIR -17 191 50 498 297 56 79 chr1 179085681 179086019 -63578334 + L1ME4a LINE L1 5485 5816 -305 470 277 163 35 chr1 179086074 179086276 -63578077 + MIR SINE MIR 33 260 -2 239 214 65 89 chr1 179086280 179086448 -63577905 + L1ME4a LINE L1 5836 5999 -122 1909 120 17 3 chr1 179086682 179086973 -63577380 + AluSx SINE Alu 1 295 -17 2035 148 3 0 chr1 179086981 179087286 -63577067 + AluSx SINE Alu 1 306 -6 1846 139 74 68 chr1 179087445 179087937 -63576416 - MER6A DNA MER2_type -1 604 1 1994 211 50 35 chr1 179087943 179088484 -63575869 + MER119 DNA MER1_type 34 582 -1 29 47 0 0 chr1 179088542 179088585 -63575768 + AT_rich Low_complexity Low_complexity 1 43 0 2093 106 7 7 chr1 179088671 179088977 -63575376 + AluSx SINE Alu 1 306 0 4814 200 117 30 chr1 179089195 179089367 -63574986 - L1PA16 LINE L1 -10 6156 6000 2100 108 14 3 chr1 179089367 179089655 -63574698 - AluSx SINE Alu -21 291 1 4814 200 117 30 chr1 179089655 179089908 -63574445 - L1PA16 LINE L1 -166 6000 5771 2294 114 0 0 chr1 179089908 179090215 -63574138 - AluSg SINE Alu -3 307 1 4814 200 117 30 chr1 179090215 179092352 -63572001 - L1PA16 LINE L1 -395 5771 3101 206 95 24 0 chr1 179092352 179092394 -63571959 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4814 200 117 30 chr1 179092394 179092967 -63571386 - L1PA16 LINE L1 -3065 3101 2579 360 235 0 0 chr1 179092970 179093051 -63571302 - MER34C LTR ERV1 -350 235 155 2280 117 0 16 chr1 179093118 179093434 -63570919 - AluSq SINE Alu -2 311 1 4087 175 23 39 chr1 179093630 179094485 -63569868 - MER57A-int LTR ERV1 -6695 842 1 556 174 9 9 chr1 179094485 179094594 -63569759 - MER57A LTR ERV1 0 403 295 2332 98 0 0 chr1 179094922 179095218 -63569135 - AluSg SINE Alu -14 296 1 1863 151 39 0 chr1 179095880 179096164 -63568189 + AluJb SINE Alu 3 297 -15 814 255 148 0 chr1 179096195 179096411 -63567942 + MIR SINE MIR 5 252 -10 1050 272 102 27 chr1 179096457 179096869 -63567484 - LTR16A LTR ERVL -6 444 2 34 42 0 0 chr1 179097030 179097078 -63567275 + AT_rich Low_complexity Low_complexity 1 48 0 824 144 0 0 chr1 179097079 179097197 -63567156 - FLAM_C SINE Alu -15 118 1 2273 88 3 0 chr1 179097447 179097744 -63566609 + AluSx SINE Alu 1 298 -14 528 236 47 47 chr1 179097748 179097896 -63566457 - MIR SINE MIR -100 162 15 630 177 9 0 chr1 179098386 179098495 -63565858 + MER21B LTR ERV1 388 497 -366 276 204 0 0 chr1 179098495 179098544 -63565809 - MER7A DNA MER2_type 0 336 288 843 180 0 0 chr1 179098546 179098685 -63565668 + FLAM_C SINE Alu 3 141 -2 1067 129 11 6 chr1 179098691 179098869 -63565484 - MER7A DNA MER2_type -41 295 117 1022 142 147 0 chr1 179098870 179099095 -63565258 - Tigger2 DNA MER2_type -10 2708 2451 3777 134 40 47 chr1 179099174 179099586 -63564767 - Tigger2 DNA MER2_type -1974 744 338 740 169 0 0 chr1 179099586 179099722 -63564631 - L1PB3 LINE L1 0 6154 6019 3777 134 40 47 chr1 179099722 179100057 -63564296 - Tigger2 DNA MER2_type -2380 338 2 740 136 32 0 chr1 179100057 179100181 -63564172 - MER7A DNA MER2_type -220 126 1 1506 176 48 21 chr1 179100181 179100510 -63563843 + MER21B LTR ERV1 496 833 -30 769 215 154 14 chr1 179100550 179100764 -63563589 + MIR SINE MIR 3 246 -16 263 91 0 23 chr1 179102856 179102900 -63561453 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2364 84 13 3 chr1 179103821 179104130 -63560223 + AluSx SINE Alu 1 312 0 576 191 101 32 chr1 179104235 179104423 -63559930 + MER106A DNA MER1_type 30 230 -6 763 187 0 22 chr1 179104423 179104557 -63559796 + FLAM_A SINE Alu 1 131 -2 1982 95 0 4 chr1 179105599 179105852 -63558501 - AluSq SINE Alu -18 295 44 30 27 0 0 chr1 179107775 179107812 -63556541 + AT_rich Low_complexity Low_complexity 1 37 0 2076 93 55 3 chr1 179107890 179108181 -63556172 + AluSg SINE Alu 1 306 -4 4301 164 183 44 chr1 179108482 179109103 -63555250 + Charlie1a DNA MER1_type 1 534 -2227 2113 114 0 7 chr1 179109103 179109392 -63554961 - AluSx SINE Alu -14 298 12 4301 164 183 44 chr1 179109392 179110051 -63554302 + Charlie1a DNA MER1_type 534 1451 -4 2454 83 0 0 chr1 179110063 179110363 -63553990 - AluSc SINE Alu -9 300 1 196 347 21 21 chr1 179110391 179110486 -63553867 - MIR SINE MIR -78 130 36 772 189 0 0 chr1 179111614 179111746 -63552607 + FLAM_C SINE Alu 2 133 0 21 0 0 0 chr1 179112394 179112415 -63551938 + AT_rich Low_complexity Low_complexity 1 21 0 2136 102 36 13 chr1 179112557 179112914 -63551439 + AluSx SINE Alu 1 364 0 487 311 120 0 chr1 179113075 179113242 -63551111 - MIR SINE MIR -56 206 20 2042 136 0 13 chr1 179114813 179115121 -63549232 + AluSx SINE Alu 1 304 -8 1967 115 0 84 chr1 179115141 179115506 -63548847 + AluSg SINE Alu 1 310 0 2220 70 40 27 chr1 179115692 179115993 -63548360 - AluY SINE Alu -6 305 1 2363 73 27 0 chr1 179116669 179116970 -63547383 + AluY SINE Alu 1 309 -2 456 89 11 22 chr1 179117193 179117283 -63547070 + (TA)n Simple_repeat Simple_repeat 2 90 0 1647 126 0 8 chr1 179117426 179117664 -63546689 - AluSg/x SINE Alu -8 304 69 749 110 9 0 chr1 179117665 179117774 -63546579 - AluSq/x SINE Alu -202 110 1 356 311 7 52 chr1 179117788 179117839 -63546514 - MIR SINE MIR -92 170 118 2446 72 0 0 chr1 179117839 179118132 -63546221 + AluY SINE Alu 1 293 -18 356 311 7 52 chr1 179118132 179118215 -63546138 - MIR SINE MIR -144 118 42 204 387 75 0 chr1 179118549 179118642 -63545711 - L2 LINE L2 -4 3268 3169 351 189 98 49 chr1 179118700 179118843 -63545510 + MER104 DNA Tc2 6 155 -25 2054 140 0 0 chr1 179118910 179119203 -63545150 - AluSx SINE Alu -17 295 3 31 0 0 0 chr1 179119398 179119429 -63544924 + AT_rich Low_complexity Low_complexity 1 31 0 2263 94 3 19 chr1 179119472 179119781 -63544572 - AluY SINE Alu -7 304 1 2009 157 7 0 chr1 179119951 179120250 -63544103 + AluJo SINE Alu 1 301 -11 318 289 0 0 chr1 179121070 179121160 -63543193 - AluSp SINE Alu -191 112 23 803 207 10 15 chr1 179121160 179121358 -63542995 + AluSg/x SINE Alu 98 294 -16 545 234 65 0 chr1 179121596 179121720 -63542633 - FLAM_A SINE Alu -1 132 1 456 134 0 0 chr1 179121850 179121917 -63542436 - AluJ/FRAM SINE Alu -16 296 230 504 207 325 0 chr1 179122037 179122206 -63542147 - MIR SINE MIR -2 260 37 1075 164 0 0 chr1 179122318 179122483 -63541870 + AluJb SINE Alu 137 301 -11 2289 120 0 0 chr1 179122544 179122853 -63541500 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr1 179123337 179123366 -63540987 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr1 179123372 179123416 -63540937 + AT_rich Low_complexity Low_complexity 1 44 0 2327 112 0 12 chr1 179124284 179124606 -63539747 - 7SLRNA srpRNA srpRNA -2 318 1 2291 104 0 0 chr1 179124923 179125221 -63539132 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr1 179125942 179125965 -63538388 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 179126111 179126143 -63538210 + AT_rich Low_complexity Low_complexity 1 32 0 431 161 14 196 chr1 179126145 179126288 -63538065 - FLAM_C SINE Alu -16 117 1 21 0 0 0 chr1 179126288 179126309 -63538044 + AT_rich Low_complexity Low_complexity 1 21 0 272 312 43 85 chr1 179126553 179126694 -63537659 - MIR3 SINE MIR -46 162 28 212 186 0 0 chr1 179126730 179126752 -63537601 + L2 LINE L2 3271 3292 -21 1909 157 0 13 chr1 179126752 179127051 -63537302 - AluJb SINE Alu -17 295 1 212 186 0 0 chr1 179127051 179127071 -63537282 + L2 LINE L2 3291 3313 0 216 343 75 22 chr1 179128163 179128297 -63536056 + L2 LINE L2 2970 3110 -162 278 98 0 24 chr1 179128456 179128497 -63535856 + Alu SINE Alu 1 40 -262 709 84 0 0 chr1 179128497 179128592 -63535761 + AluSg/x SINE Alu 208 302 -8 2085 118 3 7 chr1 179129112 179129409 -63534944 + AluSx SINE Alu 1 296 -16 545 234 65 0 chr1 179129647 179129771 -63534582 - FLAM_A SINE Alu -1 132 1 456 134 0 0 chr1 179129901 179129968 -63534385 - AluJ/FRAM SINE Alu -16 296 230 504 207 325 0 chr1 179130088 179130257 -63534096 - MIR SINE MIR -2 260 37 1075 164 0 0 chr1 179130369 179130534 -63533819 + AluJb SINE Alu 137 301 -11 2158 120 7 0 chr1 179130595 179130895 -63533458 + AluSx SINE Alu 1 302 -10 1250 162 12 55 chr1 179131707 179131960 -63532393 - MER6 DNA MER2_type -623 242 1 2160 211 50 35 chr1 179131966 179132507 -63531846 + MER119 DNA MER1_type 34 582 -1 29 47 0 0 chr1 179132565 179132608 -63531745 + AT_rich Low_complexity Low_complexity 1 43 0 2080 106 7 7 chr1 179132694 179133000 -63531353 + AluSx SINE Alu 1 306 0 5180 171 31 39 chr1 179133217 179133389 -63530964 - L1PA16 LINE L1 -10 6156 5984 2051 115 14 3 chr1 179133389 179133677 -63530676 - AluSx SINE Alu -21 291 1 5180 171 31 39 chr1 179133677 179133931 -63530422 - L1PA16 LINE L1 -182 5984 5730 2268 114 0 0 chr1 179133931 179134238 -63530115 - AluSg SINE Alu -3 307 1 5180 171 31 39 chr1 179134238 179135954 -63528399 - L1PA16 LINE L1 -436 5730 4027 3498 227 41 8 chr1 179135955 179136375 -63527978 - L1 LINE L1 -2541 3605 3200 206 95 24 0 chr1 179136375 179136417 -63527936 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3498 227 41 8 chr1 179136417 179136993 -63527360 - L1 LINE L1 -2946 3200 2576 383 235 0 0 chr1 179136993 179137074 -63527279 - MER34C LTR ERV1 -350 235 155 415 224 0 81 chr1 179137074 179137138 -63527215 - MER57A-int LTR ERV1 -4135 988 920 2259 116 0 16 chr1 179137138 179137456 -63526897 - AluSq SINE Alu 0 313 1 415 224 0 81 chr1 179137456 179137552 -63526801 - MER57A-int LTR ERV1 -4203 920 841 4370 172 23 40 chr1 179137652 179138508 -63525845 - MER57A-int LTR ERV1 -6695 842 1 590 174 9 9 chr1 179138508 179138617 -63525736 - MER57A LTR ERV1 0 403 295 2216 111 3 0 chr1 179138945 179139242 -63525111 - AluSx SINE Alu -14 298 1 25 95 0 0 chr1 179139270 179139344 -63525009 + AT_rich Low_complexity Low_complexity 1 74 0 2018 141 0 16 chr1 179139583 179139896 -63524457 + AluSx SINE Alu 4 311 -1 759 144 23 30 chr1 179141211 179141343 -63523010 + FLAM_A SINE Alu 1 131 -2 214 143 0 0 chr1 179142197 179142232 -63522121 + L2 LINE L2 3263 3297 -16 1889 168 59 73 chr1 179142422 179142567 -63521786 - Charlie1b DNA MER1_type -2288 473 327 2341 103 0 0 chr1 179142567 179142867 -63521486 - AluSx SINE Alu -12 300 1 1689 185 10 17 chr1 179142870 179143162 -63521191 - AluJo SINE Alu -20 292 3 1889 168 59 73 chr1 179143162 179143489 -63520864 - Charlie1b DNA MER1_type -2436 325 4 204 234 45 0 chr1 179143500 179143550 -63520803 - L3 LINE CR1 -10 1573 1519 503 340 91 30 chr1 179143633 179144039 -63520314 - L2 LINE L2 -948 2366 1936 1248 107 0 0 chr1 179144039 179144207 -63520146 - AluSg/x SINE Alu -8 304 137 392 303 103 0 chr1 179144208 179144373 -63519980 - L2 LINE L2 -1303 2011 1830 28 79 0 0 chr1 179145722 179145785 -63518568 + AT_rich Low_complexity Low_complexity 1 63 0 1736 178 16 13 chr1 179146773 179147077 -63517276 - AluJo SINE Alu -7 305 1 2033 153 0 16 chr1 179147081 179147394 -63516959 - AluSx SINE Alu -4 308 1 2396 72 0 16 chr1 179147547 179147851 -63516502 - AluY SINE Alu -12 299 1 2258 88 3 7 chr1 179148398 179148695 -63515658 - AluSq SINE Alu -17 296 1 667 170 157 27 chr1 179148983 179149130 -63515223 - AluJb SINE Alu -15 297 132 441 0 0 0 chr1 179149696 179149745 -63514608 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1894 55 0 4 chr1 179149747 179149984 -63514369 - L1PA7 LINE L1 -20 6134 5899 280 253 27 13 chr1 179150368 179150443 -63513910 - MER117 DNA MER1_type -121 76 1 2000 132 0 3 chr1 179151005 179151292 -63513061 - AluSx SINE Alu -26 286 1 2529 43 3 3 chr1 179151303 179151602 -63512751 - AluY SINE Alu -12 299 1 1957 164 7 0 chr1 179151772 179152071 -63512282 + AluJo SINE Alu 1 301 -11 2003 125 7 7 chr1 179152888 179153183 -63511170 + AluSx SINE Alu 1 295 -17 545 234 65 0 chr1 179153421 179153545 -63510808 - FLAM_A SINE Alu -1 132 1 456 134 0 0 chr1 179153675 179153742 -63510611 - AluJ/FRAM SINE Alu -16 296 230 504 207 325 0 chr1 179153862 179154031 -63510322 - MIR SINE MIR -2 260 37 1075 164 0 0 chr1 179154143 179154308 -63510045 + AluJb SINE Alu 137 301 -11 2289 120 0 0 chr1 179154369 179154678 -63509675 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr1 179155162 179155191 -63509162 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr1 179155197 179155241 -63509112 + AT_rich Low_complexity Low_complexity 1 44 0 2346 111 0 12 chr1 179156109 179156433 -63507920 - 7SLRNA srpRNA srpRNA 0 320 1 2291 104 0 0 chr1 179156750 179157048 -63507305 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr1 179157770 179157793 -63506560 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 179157939 179157971 -63506382 + AT_rich Low_complexity Low_complexity 1 32 0 431 161 14 196 chr1 179157973 179158116 -63506237 - FLAM_C SINE Alu -16 117 1 21 0 0 0 chr1 179158116 179158137 -63506216 + AT_rich Low_complexity Low_complexity 1 21 0 272 312 43 85 chr1 179158381 179158522 -63505831 - MIR3 SINE MIR -46 162 28 212 186 0 0 chr1 179158558 179158580 -63505773 + L2 LINE L2 3271 3292 -21 1935 157 0 13 chr1 179158580 179158879 -63505474 - AluJb SINE Alu -17 295 1 212 186 0 0 chr1 179158879 179158899 -63505454 + L2 LINE L2 3291 3313 0 232 354 63 24 chr1 179159998 179160125 -63504228 + L2 LINE L2 2979 3110 -162 262 98 0 24 chr1 179160285 179160326 -63504027 + Alu SINE Alu 1 40 -259 691 95 0 0 chr1 179160326 179160421 -63503932 + AluSg/x SINE Alu 207 301 -8 2274 91 0 58 chr1 179160747 179161077 -63503276 - AluSx SINE Alu -1 311 1 1651 186 21 3 chr1 179161079 179161364 -63502989 - AluJb SINE Alu -22 290 1 2210 111 7 3 chr1 179161993 179162290 -63502063 - AluSq SINE Alu -15 298 1 2409 48 41 0 chr1 179162421 179162713 -63501640 - AluYa5 SINE Alu -7 304 1 550 229 28 7 chr1 179162745 179162930 -63501423 - MER58C DNA MER1_type 0 215 1 2114 135 0 3 chr1 179162954 179163251 -63501102 + AluSx SINE Alu 2 297 -15 246 32 0 0 chr1 179163418 179163449 -63500904 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2149 92 0 7 chr1 179163452 179163736 -63500617 - AluSx SINE Alu -30 282 1 2157 65 0 4 chr1 179163940 179164202 -63500151 - AluY SINE Alu -14 297 37 2084 130 3 10 chr1 179164205 179164505 -63499848 - AluSq SINE Alu -15 298 1 2063 160 0 0 chr1 179164829 179165141 -63499212 + AluSx SINE Alu 1 312 0 2169 107 0 13 chr1 179165154 179165462 -63498891 + AluSg SINE Alu 1 304 -6 1618 169 6 68 chr1 179165758 179166084 -63498269 + AluJb SINE Alu 1 306 -6 1846 161 16 7 chr1 179166728 179167032 -63497321 + AluJb SINE Alu 1 307 -5 866 140 183 32 chr1 179168211 179168397 -63495956 + AluJo SINE Alu 85 298 -14 377 244 0 11 chr1 179168743 179168833 -63495520 + L2 LINE L2 3222 3310 -3 2314 75 0 3 chr1 179169267 179169559 -63494794 - AluSg SINE Alu -19 291 1 2299 115 0 0 chr1 179170636 179170941 -63493412 + AluSx SINE Alu 1 305 -7 608 169 33 87 chr1 179171272 179171456 -63492897 + MER104 DNA Tc2 1 174 -6 487 252 104 7 chr1 179171638 179171773 -63492580 + MIR SINE MIR 28 175 -87 22 0 0 0 chr1 179173634 179173656 -63490697 + GC_rich Low_complexity Low_complexity 1 22 0 2406 68 7 3 chr1 179175533 179175843 -63488510 - AluY SINE Alu 0 311 1 196 109 22 22 chr1 179176000 179176046 -63488307 + CT-rich Low_complexity Low_complexity 2 47 0 30 27 0 0 chr1 179176254 179176291 -63488062 + AT_rich Low_complexity Low_complexity 1 37 0 243 0 0 0 chr1 179176600 179176627 -63487726 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 23 0 23 chr1 179177196 179177220 -63487133 + AT_rich Low_complexity Low_complexity 1 25 -17 2098 115 3 7 chr1 179177220 179177515 -63486838 - AluSx SINE Alu -18 294 1 25 23 0 23 chr1 179177515 179177533 -63486820 + AT_rich Low_complexity Low_complexity 25 42 0 597 218 57 83 chr1 179177977 179178206 -63486147 - L2 LINE L2 -2 3311 3089 334 214 79 22 chr1 179178415 179178504 -63485849 - MIR SINE MIR -71 191 98 1989 136 0 19 chr1 179179103 179179411 -63484942 - AluJo SINE Alu -10 302 1 21 0 0 0 chr1 179180329 179180350 -63484003 + AT_rich Low_complexity Low_complexity 1 21 0 211 262 115 0 chr1 179180834 179180895 -63483458 + MIR SINE MIR 7 74 -188 326 292 72 89 chr1 179181214 179181368 -63482985 - MIR SINE MIR 0 262 112 2316 97 0 10 chr1 179181368 179181679 -63482674 + AluSx SINE Alu 1 308 -4 326 292 72 89 chr1 179181679 179181760 -63482593 - MIR SINE MIR -150 112 31 1816 189 0 10 chr1 179181887 179182193 -63482160 - AluJb SINE Alu -9 303 1 1070 195 0 0 chr1 179182235 179182409 -63481944 - FRAM SINE Alu -8 168 1 530 313 15 0 chr1 179182411 179182545 -63481808 - MER5A DNA MER1_type -18 171 36 3196 185 157 43 chr1 179182615 179183344 -63481009 + L1MC4a LINE L1 6657 7540 -268 857 126 0 37 chr1 179183344 179183479 -63480874 + FLAM_C SINE Alu 1 130 -3 3196 185 157 43 chr1 179183479 179183783 -63480570 + L1MC4a LINE L1 7540 7808 0 202 283 38 0 chr1 179185685 179185738 -63478615 + L2 LINE L2 3241 3295 -18 2405 60 0 10 chr1 179186258 179186556 -63477797 - AluY SINE Alu -16 295 1 298 169 143 26 chr1 179186699 179186776 -63477577 + MIR SINE MIR 175 260 -2 303 303 13 13 chr1 179186839 179186915 -63477438 + MER91A DNA MER1_type 120 195 -1 1127 47 0 0 chr1 179187395 179187524 -63476829 + AluSp SINE Alu 1 129 -184 2215 104 7 0 chr1 179187530 179187818 -63476535 + AluSp SINE Alu 1 290 -23 743 283 74 0 chr1 179187976 179188245 -63476108 - L1ME LINE L1 -367 5803 5515 348 240 120 16 chr1 179188291 179188416 -63475937 - L2 LINE L2 -68 3245 3108 512 226 40 57 chr1 179188444 179188621 -63475732 - L2 LINE L2 -3108 206 33 2253 97 27 0 chr1 179189969 179190267 -63474086 + AluSp SINE Alu 3 308 -5 201 129 0 0 chr1 179192377 179192408 -63471945 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 821 120 0 63 chr1 179192983 179193125 -63471228 - FLAM_C SINE Alu 0 133 1 2408 79 7 7 chr1 179193424 179193727 -63470626 - AluSc SINE Alu -6 303 1 2189 111 10 0 chr1 179193728 179194025 -63470328 - AluSx SINE Alu -12 300 1 302 285 49 32 chr1 179194538 179194661 -63469692 - MER5A DNA MER1_type -6 183 59 692 182 0 30 chr1 179194673 179194805 -63469548 + FLAM_A SINE Alu 1 128 -5 193 271 0 0 chr1 179194833 179194881 -63469472 - MER5A DNA MER1_type -141 48 1 23 0 0 0 chr1 179195155 179195178 -63469175 + AT_rich Low_complexity Low_complexity 1 23 0 546 261 112 5 chr1 179195899 179196087 -63468266 + MIR SINE MIR 11 218 -44 2014 139 3 0 chr1 179196173 179196467 -63467886 - AluJo SINE Alu -13 299 5 1732 130 10 65 chr1 179196537 179196845 -63467508 + AluJo SINE Alu 11 301 -11 213 373 29 29 chr1 179197112 179197214 -63467139 - MIR SINE MIR -141 121 20 1016 210 46 18 chr1 179197262 179197481 -63466872 + MIR SINE MIR 37 261 -1 189 195 0 0 chr1 179198461 179198502 -63465851 + (TA)n Simple_repeat Simple_repeat 2 42 0 1511 178 41 7 chr1 179198502 179198772 -63465581 - AluJo SINE Alu -5 307 29 332 231 26 0 chr1 179198773 179198851 -63465502 + MIR SINE MIR 182 261 -1 1740 158 14 4 chr1 179199757 179200035 -63464318 + AluSx SINE Alu 1 281 -31 1831 154 31 14 chr1 179200482 179200775 -63463578 - AluSx SINE Alu -14 298 1 836 269 117 41 chr1 179200826 179201779 -63462574 - L1ME LINE L1 -344 5818 4939 2241 100 7 3 chr1 179201779 179202080 -63462273 - AluSx SINE Alu -6 306 5 836 269 117 41 chr1 179202080 179202399 -63461954 - L1ME LINE L1 -1223 4939 4440 356 79 0 32 chr1 179202399 179202462 -63461891 - L1MB7 LINE L1 -1 6183 6123 836 269 117 41 chr1 179202462 179202517 -63461836 - L1ME LINE L1 -1722 4440 4391 218 261 22 0 chr1 179202906 179202952 -63461401 - L2 LINE L2 -22 3291 3245 456 275 59 23 chr1 179204383 179204409 -63459944 - L1MC5 LINE L1 -466 7495 7471 2046 102 4 0 chr1 179204409 179204673 -63459680 - AluSq SINE Alu -48 265 1 456 275 59 23 chr1 179204673 179204979 -63459374 - L1MC5 LINE L1 -490 7471 7261 594 272 35 12 chr1 179206410 179206579 -63457774 + MIR3 SINE MIR 32 204 -4 347 272 146 0 chr1 179206767 179206870 -63457483 + L2 LINE L2 3155 3272 0 1014 143 0 26 chr1 179206934 179207088 -63457265 + FAM SINE Alu 19 168 -17 1522 166 85 0 chr1 179207148 179207419 -63456934 + AluJb SINE Alu 1 294 -18 2390 66 0 20 chr1 179207519 179207823 -63456530 - AluY SINE Alu -13 298 1 367 311 38 0 chr1 179207824 179207956 -63456397 + MIR3 SINE MIR 70 206 -2 2307 99 3 0 chr1 179208619 179208921 -63455432 - AluSx SINE Alu -9 303 1 22 0 0 0 chr1 179209576 179209598 -63454755 + AT_rich Low_complexity Low_complexity 1 22 0 28 79 0 0 chr1 179211780 179211843 -63452510 + AT_rich Low_complexity Low_complexity 1 63 0 1779 178 16 13 chr1 179212830 179213133 -63451220 - AluJo SINE Alu -8 304 1 2077 154 0 16 chr1 179213137 179213449 -63450904 - AluSx SINE Alu -5 307 1 2468 72 0 16 chr1 179213602 179213906 -63450447 - AluY SINE Alu -12 299 1 2332 88 3 7 chr1 179214453 179214750 -63449603 - AluSq SINE Alu -17 296 1 676 163 157 27 chr1 179215038 179215185 -63449168 - AluJb SINE Alu -15 297 132 441 0 0 0 chr1 179215750 179215799 -63448554 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1853 55 0 4 chr1 179215801 179216038 -63448315 - L1PA7 LINE L1 -20 6134 5899 278 253 27 13 chr1 179216421 179216496 -63447857 - MER117 DNA MER1_type -121 76 1 2060 132 0 3 chr1 179217058 179217345 -63447008 - AluSx SINE Alu -26 286 1 2655 43 0 3 chr1 179217356 179217657 -63446696 - AluY SINE Alu -11 300 1 1919 151 0 7 chr1 179218495 179218787 -63445566 + AluJb SINE Alu 1 290 -22 2151 106 10 3 chr1 179218787 179219079 -63445274 + AluSg SINE Alu 1 294 -16 4588 115 85 107 chr1 179219191 179220613 -63443740 + pTR5 LTR ERV1 741 2438 0 672 169 34 0 chr1 179221035 179221153 -63443200 - FLAM_A SINE Alu -7 126 5 2304 111 3 0 chr1 179221156 179221463 -63442890 - AluY SINE Alu -1 310 3 302 328 49 82 chr1 179221546 179221851 -63442502 - L1 LINE L1 -1490 4656 4362 368 309 140 6 chr1 179221966 179222322 -63442031 - L1M4 LINE L1 -1222 4924 4521 1254 170 0 66 chr1 179223478 179223669 -63440684 - AluJb SINE Alu -3 309 136 2253 107 7 3 chr1 179223669 179223969 -63440384 + AluSq SINE Alu 1 301 -12 1254 170 0 66 chr1 179223969 179224018 -63440335 - AluJb SINE Alu -176 136 85 262 296 14 0 chr1 179225321 179225392 -63438961 + L3 LINE CR1 1504 1575 -2 1461 279 19 28 chr1 179225541 179225988 -63438365 + LTR45 LTR ERV1 1 451 -74 186 43 0 0 chr1 179225988 179226011 -63438342 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2245 96 0 3 chr1 179226013 179226295 -63438058 - AluSg SINE Alu -29 281 1 1461 279 19 28 chr1 179226295 179226374 -63437979 + LTR45 LTR ERV1 452 525 0 319 258 76 45 chr1 179226688 179226820 -63437533 + L2 LINE L2 3173 3308 -5 318 252 130 9 chr1 179227251 179227366 -63436987 - MIR SINE MIR -64 144 16 3115 153 29 52 chr1 179228713 179228909 -63435444 + L1MB3 LINE L1 5505 5704 -479 2333 108 0 0 chr1 179228909 179229216 -63435137 - AluSq SINE Alu -6 307 1 3115 153 29 52 chr1 179229216 179229712 -63434641 + L1MB3 LINE L1 5704 6181 -2 236 182 0 0 chr1 179230942 179230986 -63433367 + L1MB4 LINE L1 6018 6061 -119 318 89 0 0 chr1 179230986 179231031 -63433322 + AluJo SINE Alu 1 45 -256 594 89 0 0 chr1 179231031 179231121 -63433232 + AluSg/x SINE Alu 219 308 -1 1673 154 31 0 chr1 179232747 179233006 -63431347 + AluJo SINE Alu 37 303 -9 554 107 0 24 chr1 179233093 179233177 -63431176 + AluSx SINE Alu 2 83 -230 382 232 0 50 chr1 179233316 179233415 -63430938 + LTR8 LTR ERV1 25 118 -573 1398 115 10 24 chr1 179233423 179233664 -63430689 + AluSx SINE Alu 85 310 0 2056 147 34 0 chr1 179234363 179234717 -63429636 + MER47A DNA MER2_type 1 366 0 2138 115 0 3 chr1 179235362 179235648 -63428705 + AluSx SINE Alu 1 285 -27 1431 255 50 45 chr1 179236078 179236481 -63427872 + MER87 LTR ERV1 1 409 -132 2207 97 0 36 chr1 179236481 179236789 -63427564 + AluSg SINE Alu 1 297 -13 1431 255 50 45 chr1 179236789 179236923 -63427430 + MER87 LTR ERV1 409 541 0 1952 140 3 7 chr1 179237036 179237328 -63427025 - AluSx SINE Alu -21 291 1 523 288 96 6 chr1 179237328 179237505 -63426848 - MIR SINE MIR -68 194 2 252 0 0 0 chr1 179239042 179239070 -63425283 + (CA)n Simple_repeat Simple_repeat 1 28 0 249 284 147 0 chr1 179240686 179240788 -63423565 - MIR SINE MIR -62 146 30 348 148 0 0 chr1 179241537 179241598 -63422755 + (TG)n Simple_repeat Simple_repeat 2 62 0 350 342 161 7 chr1 179244886 179245041 -63419312 + MER91A DNA MER1_type 1 179 -17 387 254 187 8 chr1 179245109 179245243 -63419110 + MER5A DNA MER1_type 26 183 -6 2026 113 0 34 chr1 179245634 179245926 -63418427 - AluSx SINE Alu -18 294 13 209 351 188 5 chr1 179246012 179246220 -63418133 - L2 LINE L2 -159 3113 2868 305 357 37 67 chr1 179246332 179246632 -63417721 + L2 LINE L2 2971 3261 -11 1170 145 0 0 chr1 179247573 179247739 -63416614 - AluJb SINE Alu -21 291 126 1629 220 174 12 chr1 179247898 179248408 -63415945 + MLT1E LTR MaLR 1 593 0 1840 142 71 0 chr1 179249586 179249867 -63414486 - AluSx SINE Alu -11 301 1 2049 90 3 84 chr1 179251131 179251453 -63412900 - AluSq SINE Alu -17 296 1 3318 108 4 2 chr1 179251725 179252218 -63412135 - L1PA13 LINE L1 -11 6152 5659 246 242 84 42 chr1 179252222 179252317 -63412036 - MIR SINE MIR -62 146 48 241 358 98 0 chr1 179252399 179252522 -63411831 - MER5A DNA MER1_type -1 188 54 2434 92 7 0 chr1 179252820 179253123 -63411230 + AluSq SINE Alu 1 305 -8 457 309 78 40 chr1 179253749 179254363 -63409990 + L1ME3A LINE L1 5260 5904 -266 343 236 143 37 chr1 179254968 179255129 -63409224 + MIR SINE MIR 9 186 -76 224 290 112 9 chr1 179255951 179256058 -63408295 - L2 LINE L2 0 3272 3155 266 273 169 0 chr1 179256555 179256632 -63407721 + L2 LINE L2 3182 3271 -1 189 324 73 15 chr1 179257092 179257160 -63407193 - MIR SINE MIR -61 147 76 2047 136 31 0 chr1 179258452 179258739 -63405614 - AluSq SINE Alu -17 296 1 1175 147 28 36 chr1 179258957 179259208 -63405145 - L1MA8 LINE L1 -3 6288 6040 2204 115 0 16 chr1 179259217 179259521 -63404832 - AluSq SINE Alu -13 300 2 279 0 0 0 chr1 179260523 179260554 -63403799 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr1 179260706 179260728 -63403625 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1479 228 93 11 chr1 179261010 179261374 -63402979 - MSTD LTR MaLR 0 396 3 408 148 32 7 chr1 179261440 179261511 -63402842 - AluSp SINE Alu -114 189 126 266 339 134 0 chr1 179261703 179261815 -63402538 + MIR SINE MIR 8 134 -128 247 315 85 54 chr1 179261904 179262034 -63402319 + L2 LINE L2 3134 3267 -5 183 299 162 8 chr1 179262152 179262269 -63402084 + MER5A DNA MER1_type 7 141 -48 552 167 49 0 chr1 179262270 179262372 -63401981 + MER94 DNA DNA 1 107 -27 460 243 36 108 chr1 179263425 179263647 -63400706 + L3 LINE CR1 1118 1323 -254 275 336 162 52 chr1 179263699 179263928 -63400425 + L2 LINE L2 3019 3272 0 395 236 75 34 chr1 179263964 179264099 -63400254 - MIR3 SINE MIR -40 168 43 1255 185 76 4 chr1 179264244 179264359 -63399994 + AluJo SINE Alu 3 108 -204 396 0 0 0 chr1 179264359 179264403 -63399950 + (CA)n Simple_repeat Simple_repeat 1 44 0 1255 185 76 4 chr1 179264403 179264536 -63399817 + AluJo SINE Alu 108 269 -43 677 186 69 21 chr1 179264542 179264687 -63399666 - MIR SINE MIR -109 153 2 223 254 36 0 chr1 179264874 179264929 -63399424 + L3 LINE CR1 1511 1567 -10 875 232 113 39 chr1 179264933 179265380 -63398973 - MER115 DNA AcHobo -10 683 142 587 253 33 82 chr1 179266204 179266449 -63397904 + MIR SINE MIR 16 248 -14 220 274 57 57 chr1 179266837 179266943 -63397410 + MIR SINE MIR 28 133 -129 211 291 0 0 chr1 179267141 179267196 -63397157 + GA-rich Low_complexity Low_complexity 3 57 0 2170 104 0 0 chr1 179267206 179267503 -63396850 + AluSx SINE Alu 2 298 -14 449 302 39 17 chr1 179267986 179268175 -63396178 - MIR SINE MIR -59 203 11 251 221 273 0 chr1 179269255 179269332 -63395021 + L2 LINE L2 3211 3308 -5 441 286 92 12 chr1 179269930 179270097 -63394256 + MIR SINE MIR 37 214 -48 251 268 98 40 chr1 179270519 179271055 -63393298 + L1ME4a LINE L1 5422 6051 -70 503 284 96 60 chr1 179272167 179272385 -63391968 - MIR SINE MIR -24 238 13 52 30 0 0 chr1 179272808 179272874 -63391479 + AT_rich Low_complexity Low_complexity 1 66 0 197 50 0 100 chr1 179272883 179272943 -63391410 + (TATAA)n Simple_repeat Simple_repeat 5 58 0 275 341 0 0 chr1 179273031 179273113 -63391240 + MIR SINE MIR 51 132 -130 233 302 75 19 chr1 179273241 179273347 -63391006 - L1ME LINE L1 -568 5594 5483 1235 114 6 0 chr1 179273535 179273710 -63390643 - AluSp SINE Alu -8 305 130 371 363 34 11 chr1 179273819 179273998 -63390355 + MIR3 SINE MIR 19 201 -7 2310 82 0 0 chr1 179274729 179275033 -63389320 - AluSg SINE Alu -6 304 1 918 199 22 22 chr1 179275350 179275581 -63388772 - L1MB7 LINE L1 0 6184 5954 1154 143 23 0 chr1 179275993 179276168 -63388185 - MER5A DNA MER1_type -10 179 1 223 339 48 40 chr1 179276706 179276882 -63387471 - MIR SINE MIR -45 217 42 325 186 17 0 chr1 179278644 179278703 -63385650 + Tigger5 DNA MER2_type 2264 2323 0 1443 230 132 26 chr1 179279457 179279949 -63384404 + L1MB8 LINE L1 5632 6175 -3 1915 131 20 10 chr1 179280170 179280475 -63383878 - AluSx SINE Alu -4 308 1 284 252 30 137 chr1 179280959 179281090 -63383263 - L2 LINE L2 0 3313 3197 3990 128 36 25 chr1 179281142 179281783 -63382570 + MER51A LTR ERV1 1 640 0 2331 135 62 51 chr1 179283127 179283579 -63380774 - L1MD2 LINE L1 -10 6349 5893 1090 251 35 91 chr1 179283583 179284010 -63380343 + MLT1J LTR MaLR 62 464 -47 869 153 172 0 chr1 179284095 179284252 -63380101 - MER5A DNA MER1_type 0 189 6 856 299 77 30 chr1 179285884 179286478 -63377875 - L2 LINE L2 -177 3095 2458 2389 65 7 0 chr1 179286482 179286789 -63377564 + AluY SINE Alu 1 309 -2 1605 160 0 26 chr1 179287256 179287551 -63376802 + AluJo SINE Alu 23 310 0 516 135 306 56 chr1 179287551 179287783 -63376570 - L1MC5 LINE L1 -51 7910 7609 2277 92 0 0 chr1 179287783 179288076 -63376277 + AluSc SINE Alu 1 293 -16 516 135 306 56 chr1 179288076 179288095 -63376258 - L1MC5 LINE L1 -352 7609 7596 1964 169 58 12 chr1 179288429 179288842 -63375511 + L1MB2 LINE L1 5732 6163 -8 2220 101 0 16 chr1 179289631 179289949 -63374404 + AluSq SINE Alu 1 313 0 4241 102 48 3 chr1 179290011 179290636 -63373717 - MER39B LTR ERV1 0 653 1 198 0 0 0 chr1 179290987 179291009 -63373344 + (A)n Simple_repeat Simple_repeat 1 22 0 516 247 160 7 chr1 179291292 179291442 -63372911 + MER5A DNA MER1_type 17 189 0 977 259 23 23 chr1 179291717 179291976 -63372377 - MIR SINE MIR 0 262 4 408 260 96 0 chr1 179292032 179292136 -63372217 + MER81 DNA DNA 1 114 0 214 220 40 0 chr1 179292917 179292967 -63371386 + MIR SINE MIR 112 163 -99 3362 123 49 9 chr1 179293283 179293810 -63370543 + MER34C LTR ERV1 37 584 -1 207 205 0 0 chr1 179294533 179294572 -63369781 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 260 302 107 35 chr1 179294712 179294881 -63369472 + MIR SINE MIR 76 256 -6 229 267 100 8 chr1 179295369 179295489 -63368864 - L1ME4a LINE L1 -1 6120 5990 191 274 78 0 chr1 179296367 179296418 -63367935 + L2 LINE L2 3213 3267 -5 444 342 147 9 chr1 179296490 179296720 -63367633 + L2 LINE L2 2529 2726 -587 2183 102 0 0 chr1 179296720 179297013 -63367340 + AluSx SINE Alu 1 293 -19 444 342 147 9 chr1 179297013 179297358 -63366995 + L2 LINE L2 2726 3177 -136 1024 201 30 10 chr1 179297395 179297594 -63366759 + MER20 DNA MER1_type 16 218 -1 340 325 88 9 chr1 179297597 179297711 -63366642 + L2 LINE L2 3150 3272 0 193 317 81 92 chr1 179298775 179298852 -63365501 + L2 LINE L2 1295 1371 -1943 204 40 0 0 chr1 179298852 179298877 -63365476 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2020 109 0 0 chr1 179298881 179299156 -63365197 - AluSx SINE Alu -37 275 1 193 317 81 92 chr1 179299156 179300472 -63363881 + L2 LINE L2 1374 2678 -636 220 353 42 42 chr1 179300520 179300639 -63363714 + L2 LINE L2 3129 3247 -25 225 344 58 32 chr1 179300761 179300950 -63363403 - L2 LINE L2 -1961 1353 1160 271 396 69 5 chr1 179301148 179301350 -63363003 + L2 LINE L2 604 818 -2496 2157 116 0 0 chr1 179301529 179301831 -63362522 - AluSx SINE Alu -10 302 1 336 322 102 49 chr1 179301832 179302358 -63361995 + L2 LINE L2 2688 3272 0 256 272 296 0 chr1 179302761 179302842 -63361511 - MIR SINE MIR -87 175 71 4749 154 42 23 chr1 179303231 179304892 -63359461 - L1MB1 LINE L1 -5 6163 4475 424 109 16 0 chr1 179304893 179304957 -63359396 - L1MB1 LINE L1 -2062 4084 4020 1996 313 97 37 chr1 179305062 179306494 -63357859 + L2 LINE L2 1741 3262 -10 224 276 89 73 chr1 179306483 179306606 -63357747 + L2 LINE L2 1795 1919 -1395 * 2088 105 7 23 chr1 179306810 179307116 -63357237 - AluSx SINE Alu -11 301 1 199 181 83 56 chr1 179307306 179307378 -63356975 + L2 LINE L2 70 143 -3171 209 244 0 0 chr1 179307922 179307967 -63356386 + L2 LINE L2 2997 3041 -231 288 137 0 0 chr1 179308694 179308745 -63355608 + (TCC)n Simple_repeat Simple_repeat 3 53 0 204 183 117 0 chr1 179309099 179309159 -63355194 + MIR SINE MIR 182 248 -14 1322 287 75 14 chr1 179310067 179310595 -63353758 - L1MC4a LINE L1 -518 5646 5465 509 244 235 11 chr1 179310816 179310985 -63353368 + MIR SINE MIR 6 252 -8 245 147 0 0 chr1 179310985 179311019 -63353334 + L2 LINE L2 3223 3256 -16 25 0 0 0 chr1 179313187 179313212 -63351141 + GC_rich Low_complexity Low_complexity 1 25 0 2168 263 58 18 chr1 179314923 179315712 -63348641 - L1ME3A LINE L1 -206 5964 5150 * 2448 146 45 69 chr1 179315686 179316236 -63348117 - L1MD1 LINE L1 0 6242 5706 1283 163 20 20 chr1 179316236 179316511 -63347842 + AluJo SINE Alu 45 312 0 2207 203 38 83 chr1 179316511 179317017 -63347336 - L1MD1 LINE L1 -651 5708 5181 1562 104 26 30 chr1 179317017 179317247 -63347106 + MER30 DNA MER1_type 2 230 0 2207 203 38 83 chr1 179317247 179317903 -63346450 - L1MD1 LINE L1 -1178 5181 4597 933 207 37 18 chr1 179317964 179318199 -63346154 - L1MD1 LINE L1 -2160 3986 3740 329 0 75 38 chr1 179318199 179318252 -63346101 - L1MA10 LINE L1 -1 6333 6279 933 207 37 18 chr1 179318252 179318273 -63346080 - L1MD1 LINE L1 -2406 3740 3721 2523 119 91 7 chr1 179318275 179318694 -63345659 - L1MA5 LINE L1 -2 6298 5845 5419 149 21 52 chr1 179318694 179318823 -63345530 - L1MA10 LINE L1 -41 6293 6162 2448 71 0 0 chr1 179318823 179319118 -63345235 - AluY SINE Alu -16 295 1 5419 149 21 52 chr1 179319118 179319836 -63344517 - L1MA10 LINE L1 -172 6162 5509 2257 94 10 19 chr1 179319836 179320144 -63344209 - AluSg1 SINE Alu -4 305 1 5419 149 21 52 chr1 179320144 179320787 -63343566 - L1MA10 LINE L1 -825 5509 4848 2549 65 0 0 chr1 179320869 179321179 -63343174 + AluY SINE Alu 1 310 -1 1663 163 99 38 chr1 179321903 179322247 -63342106 + MLT1A1 LTR MaLR 1 365 0 675 234 73 81 chr1 179322422 179322695 -63341658 + MER46C DNA MER2_type 2 272 -66 249 275 225 28 chr1 179323366 179323508 -63340845 + MIR SINE MIR 13 182 -80 2216 121 3 0 chr1 179323765 179324072 -63340281 - AluSx SINE Alu -4 308 1 34 24 0 0 chr1 179325629 179325670 -63338683 + AT_rich Low_complexity Low_complexity 1 41 0 244 304 0 0 chr1 179328528 179328597 -63335756 - MIR SINE MIR -22 240 172 431 266 142 47 chr1 179328600 179328875 -63335478 + L2 LINE L2 1734 2034 -1280 1082 305 70 24 chr1 179328880 179329444 -63334909 + L2 LINE L2 2732 3313 0 216 264 273 18 chr1 179329450 179329560 -63334793 - MIR SINE MIR -113 149 12 207 320 165 10 chr1 179329739 179329836 -63334517 + L2 LINE L2 3197 3308 -5 398 275 27 34 chr1 179329929 179330078 -63334275 + MER5A DNA MER1_type 4 151 -38 182 347 156 36 chr1 179330140 179330307 -63334046 - L2 LINE L2 -165 3107 2921 501 365 101 24 chr1 179330424 179331000 -63333353 - L2 LINE L2 -2073 1241 622 2099 137 3 0 chr1 179331203 179331503 -63332850 + AluSq SINE Alu 1 301 -12 1400 270 121 15 chr1 179331816 179332420 -63331933 + L1MC4a LINE L1 5254 5921 -1887 2097 118 3 7 chr1 179332444 179332733 -63331620 + AluSc SINE Alu 1 288 -21 231 186 0 0 chr1 179332741 179332782 -63331571 + (TA)n Simple_repeat Simple_repeat 1 44 -26 2239 109 3 7 chr1 179332782 179333085 -63331268 + AluSx SINE Alu 2 303 -9 231 186 0 0 chr1 179333085 179333113 -63331240 + (TA)n Simple_repeat Simple_repeat 43 70 0 315 0 0 0 chr1 179333113 179333148 -63331205 + (TG)n Simple_repeat Simple_repeat 2 36 0 1367 296 75 9 chr1 179333163 179333713 -63330640 + L2 LINE L2 1502 2087 -1227 508 138 43 32 chr1 179333734 179333828 -63330525 + L2 LINE L2 3179 3273 -40 2253 106 3 0 chr1 179333861 179334154 -63330199 + AluSp SINE Alu 1 294 -19 1687 177 4 11 chr1 179334363 179334640 -63329713 - AluSx SINE Alu -37 275 1 4272 174 33 23 chr1 179335694 179337195 -63327158 - L1MB7 LINE L1 -130 6552 5043 1075 189 5 0 chr1 179337183 179337379 -63326974 - L1MB7 LINE L1 -6333 209 13 * 1144 157 78 5 chr1 179337722 179337926 -63326427 + L1PA16 LINE L1 5932 6150 -16 444 321 133 50 chr1 179338137 179338520 -63325833 + L2 LINE L2 2554 2968 -346 278 227 0 27 chr1 179338750 179338825 -63325528 + L1 LINE L1 4675 4747 -1399 5748 146 40 33 chr1 179339115 179340588 -63323765 + L1M2 LINE L1 4249 5738 -574 851 331 53 30 chr1 179340593 179341064 -63323289 + L1M3b LINE L1 1218 1699 -5797 2570 258 26 100 chr1 179341471 179342502 -63321851 + L1M3b LINE L1 2022 3108 -4458 1045 42 0 0 chr1 179342502 179342622 -63321731 + L1PA5 LINE L1 6032 6151 -3 2570 258 26 100 chr1 179342622 179342836 -63321517 + L1M3b LINE L1 3108 3336 -4230 376 113 16 0 chr1 179342834 179342896 -63321457 + L1M2 LINE L1 5725 5787 -513 * 2367 227 39 2 chr1 179342930 179343521 -63320832 - L1M4 LINE L1 -883 5263 4651 400 228 10 88 chr1 179343522 179343715 -63320638 - LTR37B LTR ERV1 -21 447 270 2090 134 0 0 chr1 179343972 179344291 -63320062 - AluSx SINE Alu 0 319 1 409 261 170 36 chr1 179344550 179344715 -63319638 + L2 LINE L2 3126 3312 -1 1681 109 4 4 chr1 179345372 179345601 -63318752 - AluSg SINE Alu -53 257 29 657 75 0 0 chr1 179346335 179346415 -63317938 - MADE1 DNA Mariner 0 80 1 233 329 41 0 chr1 179346892 179346965 -63317388 + L2 LINE L2 3186 3261 -11 1048 239 197 40 chr1 179347219 179347644 -63316709 - L2 LINE L2 0 3313 2956 773 199 51 11 chr1 179347644 179347820 -63316533 + MER53 DNA DNA 5 187 -2 1048 239 197 40 chr1 179347820 179348112 -63316241 - L2 LINE L2 -357 2956 2492 1055 242 95 6 chr1 179348142 179348489 -63315864 - L2 LINE L2 -1168 2146 1769 243 266 195 9 chr1 179348496 179348609 -63315744 + MIR SINE MIR 63 196 -66 554 227 21 35 chr1 179348698 179348839 -63315514 + MIR SINE MIR 110 248 -14 2322 93 3 0 chr1 179349204 179349504 -63314849 - AluSp SINE Alu -12 301 1 221 373 0 9 chr1 179350069 179350179 -63314174 + GA-rich Low_complexity Low_complexity 1 109 0 189 121 17 35 chr1 179350505 179350563 -63313790 + (TA)n Simple_repeat Simple_repeat 1 57 0 2407 73 26 0 chr1 179350786 179351089 -63313264 - AluY SINE Alu 0 311 1 2276 67 40 27 chr1 179351765 179352065 -63312288 + AluY SINE Alu 1 304 -7 692 169 33 87 chr1 179352396 179352580 -63311773 + MER104 DNA Tc2 1 174 -6 479 252 104 7 chr1 179352762 179352897 -63311456 + MIR SINE MIR 28 175 -87 22 0 0 0 chr1 179354758 179354780 -63309573 + GC_rich Low_complexity Low_complexity 1 22 0 1758 138 26 0 chr1 179356324 179356593 -63307760 - MER47A DNA MER2_type -90 276 1 1364 115 10 24 chr1 179357292 179357537 -63306816 - AluSg/x SINE Alu 0 312 87 395 222 0 50 chr1 179357545 179357644 -63306709 - LTR8 LTR ERV1 -573 118 25 2077 113 0 3 chr1 179358075 179358358 -63305995 - AluSx SINE Alu -30 282 1 233 149 50 35 chr1 179561419 179561560 -63102793 + (TATAA)n Simple_repeat Simple_repeat 5 147 0 257 231 44 15 chr1 179561568 179561848 -63102505 + (TA)n Simple_repeat Simple_repeat 1 288 0 2045 133 0 23 chr1 179562103 179562405 -63101948 + AluSx SINE Alu 1 295 -17 2413 62 0 10 chr1 179563427 179563733 -63100620 - AluY SINE Alu -8 303 1 778 301 65 4 chr1 179563938 179564184 -63100169 + MIR SINE MIR 2 262 0 199 258 16 16 chr1 179564681 179564743 -63099610 + L2 LINE L2 3209 3270 -2 258 299 78 110 chr1 179564837 179564991 -63099362 + MER91A DNA MER1_type 31 179 -17 2445 49 0 33 chr1 179565462 179565768 -63098585 - AluY SINE Alu -8 303 8 3347 57 2 20 chr1 179566028 179566484 -63097869 - LTR7 LTR ERV1 -2 448 1 2465 79 48 13 chr1 179566484 179566863 -63097490 - HERVH LTR ERV1 0 7713 7322 1377 122 18 9 chr1 179566861 179567082 -63097271 - HERVH LTR ERV1 -1894 5819 5597 * 4102 150 23 1 chr1 179567079 179567727 -63096626 - HERVH LTR ERV1 -2564 5149 4488 3249 119 6 6 chr1 179567729 179568231 -63096122 - HERVH LTR ERV1 -3720 3993 3492 933 128 20 0 chr1 179568221 179568369 -63095984 - HERVH LTR ERV1 -4423 3290 3140 * 20099 92 29 8 chr1 179568363 179571291 -63093062 - HERVH LTR ERV1 -4726 2987 1 762 98 0 31 chr1 179571293 179571429 -63092924 - LTR7 LTR ERV1 -2 448 1 31 68 0 0 chr1 179571456 179571515 -63092838 + AT_rich Low_complexity Low_complexity 1 59 0 1818 187 18 13 chr1 179572872 179573257 -63091096 - L1MB3 LINE L1 0 6183 5797 494 76 0 0 chr1 179573259 179573325 -63091028 - MLT2A2 LTR ERVL -2 451 386 1249 65 7 0 chr1 179573325 179573502 -63090851 - AluY SINE Alu 0 307 130 1487 245 72 60 chr1 179573505 179574007 -63090346 - MLT2B3 LTR ERVL -46 508 1 1645 159 59 48 chr1 179574008 179574380 -63089973 - L1MB3 LINE L1 -381 5799 5424 369 0 0 0 chr1 179574539 179574580 -63089773 + (CA)n Simple_repeat Simple_repeat 2 42 0 3984 163 51 6 chr1 179576367 179577067 -63087286 + MER44D DNA MER2_type 2 605 0 1102 293 93 28 chr1 179578578 179579039 -63085314 - L2 LINE L2 0 3313 2823 182 273 55 36 chr1 179579074 179579129 -63085224 + MIR SINE MIR 52 107 -155 948 202 47 126 chr1 179579617 179580023 -63084330 + MLT1A2 LTR MaLR 1 374 0 430 348 159 15 chr1 179580300 179580766 -63083587 + L2 LINE L2 2431 2963 -351 236 238 0 113 chr1 179580962 179581042 -63083311 + L2 LINE L2 3125 3195 -77 2172 103 7 7 chr1 179581819 179582121 -63082232 - AluSq SINE Alu -11 302 1 38 75 0 0 chr1 179583111 179583191 -63081162 + AT_rich Low_complexity Low_complexity 1 80 0 1753 301 49 56 chr1 179583497 179584641 -63079712 - L2 LINE L2 0 3313 2179 991 201 37 14 chr1 179584641 179584855 -63079498 - MER20 DNA MER1_type 0 219 1 1753 301 49 56 chr1 179584855 179584995 -63079358 - L2 LINE L2 -1134 2179 2039 546 307 80 64 chr1 179585103 179585458 -63078895 + L2 LINE L2 2669 3035 -278 380 304 49 49 chr1 179585718 179585922 -63078431 + L2 LINE L2 3109 3312 -1 1198 229 95 3 chr1 179586065 179586380 -63077973 + MER2 DNA MER2_type 1 344 0 22 35 0 0 chr1 179586608 179586637 -63077716 + AT_rich Low_complexity Low_complexity 1 29 0 2541 58 0 0 chr1 179586805 179587113 -63077240 - AluY SINE Alu -3 308 1 21 0 0 0 chr1 179587116 179587137 -63077216 + AT_rich Low_complexity Low_complexity 1 21 0 192 323 32 0 chr1 179587166 179587228 -63077125 - L2 LINE L2 -10 3262 3199 333 295 86 14 chr1 179587326 179587465 -63076888 - L2 LINE L2 -185 3087 2939 942 312 47 30 chr1 179589028 179589672 -63074681 - L2 LINE L2 -9 3304 2653 693 293 189 25 chr1 179589672 179590221 -63074132 - L2 LINE L2 -1070 2244 1606 1418 304 143 39 chr1 179590273 179591089 -63073264 - L2 LINE L2 -2376 938 38 262 241 120 37 chr1 179591949 179592057 -63072296 + L2 LINE L2 3197 3313 0 432 303 113 81 chr1 179592086 179592151 -63072202 + HAL1 LINE L1 1090 1151 -1356 2176 109 0 0 chr1 179592151 179592445 -63071908 - AluSc SINE Alu -15 294 1 432 303 113 81 chr1 179592445 179592667 -63071686 + HAL1 LINE L1 1151 1396 -1111 2207 116 7 0 chr1 179592667 179592970 -63071383 + AluY SINE Alu 1 305 -6 432 303 113 81 chr1 179592970 179593087 -63071266 + HAL1 LINE L1 1396 1508 -999 22 56 0 0 chr1 179593093 179593129 -63071224 + AT_rich Low_complexity Low_complexity 1 36 0 1336 191 14 30 chr1 179593129 179593631 -63070722 + L1P5 LINE L1 3832 5436 -720 273 126 30 0 chr1 179593615 179593687 -63070666 - L1MA3 LINE L1 -127 6177 6097 * 23 78 0 0 chr1 179593775 179593826 -63070527 + AT_rich Low_complexity Low_complexity 1 51 0 416 280 155 23 chr1 179594032 179594459 -63069894 + L1MC4 LINE L1 7314 7899 -143 21 0 0 0 chr1 179594561 179594582 -63069771 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 179594653 179594692 -63069661 + AT_rich Low_complexity Low_complexity 1 39 0 21 104 0 0 chr1 179595915 179595992 -63068361 + AT_rich Low_complexity Low_complexity 1 77 0 21 89 0 0 chr1 179597346 179597402 -63066951 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr1 179597749 179597773 -63066580 + AT_rich Low_complexity Low_complexity 1 24 0 359 226 7 22 chr1 179598234 179598371 -63065982 + CT-rich Low_complexity Low_complexity 2 136 0 815 266 22 61 chr1 179598662 179598940 -63065413 - LTR16A LTR ERVL -14 436 170 24 67 0 0 chr1 179599283 179599328 -63065025 + AT_rich Low_complexity Low_complexity 1 45 0 185 108 27 0 chr1 179600143 179600180 -63064173 + (TA)n Simple_repeat Simple_repeat 1 38 0 394 308 25 0 chr1 179600399 179600519 -63063834 + L2 LINE L2 3189 3311 -2 815 255 23 9 chr1 179601221 179601437 -63062916 - MER20 DNA MER1_type 0 219 1 207 0 0 0 chr1 179601939 179601962 -63062391 + (TG)n Simple_repeat Simple_repeat 2 24 0 2028 156 0 0 chr1 179603789 179604090 -63060263 + AluSx SINE Alu 1 301 -11 43 35 0 0 chr1 179604169 179604226 -63060127 + AT_rich Low_complexity Low_complexity 1 57 0 31287 31 4 0 chr1 179604465 179609015 -63055338 - L1PA3 LINE L1 -1 6154 1589 32 26 0 0 chr1 179609076 179609115 -63055238 + AT_rich Low_complexity Low_complexity 1 39 0 1715 265 73 36 chr1 179609138 179609689 -63054664 - MLT1E LTR MaLR -15 578 8 252 137 0 0 chr1 179610057 179610108 -63054245 + (A)n Simple_repeat Simple_repeat 1 51 0 293 366 42 7 chr1 179610735 179610877 -63053476 - MIR SINE MIR -82 180 34 208 250 0 0 chr1 179613173 179613217 -63051136 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 1224 179 32 37 chr1 179613833 179614079 -63050274 + AluJo SINE Alu 1 245 -67 590 309 0 6 chr1 179615059 179615221 -63049132 - MER5A DNA MER1_type 0 189 29 255 293 47 80 chr1 179615693 179615843 -63048510 + MIR SINE MIR 14 158 -104 749 326 118 20 chr1 179616950 179617572 -63046781 - L2 LINE L2 0 3313 2639 2545 112 22 0 chr1 179617572 179617938 -63046415 - THE1C LTR MaLR 0 375 2 11155 111 6 4 chr1 179617939 179619516 -63044837 - THE1C-int LTR MaLR 0 1580 1 1897 163 76 17 chr1 179619516 179619860 -63044493 - THE1B LTR MaLR 0 364 1 12449 198 53 9 chr1 179619860 179623858 -63040495 - L1PBa LINE L1 -903 5959 1799 7687 24 0 0 chr1 179623858 179624788 -63039565 - L1PA2 LINE L1 -1 6154 5225 10949 29 2 18 chr1 179624788 179626142 -63038211 + L1PA2 LINE L1 3917 5249 -897 3698 145 11 0 chr1 179626112 179626732 -63037621 - L1PBa LINE L1 -5054 1809 1205 * 365 212 0 0 chr1 179626735 179626801 -63037552 - L1PBa LINE L1 -5809 1054 989 * 2382 218 23 6 chr1 179626784 179627302 -63037051 - L1PBa LINE L1 -6336 527 1 26 30 0 0 chr1 179627487 179627520 -63036833 + AT_rich Low_complexity Low_complexity 1 33 0 456 19 0 0 chr1 179627687 179627740 -63036613 + (TG)n Simple_repeat Simple_repeat 2 54 0 1382 186 31 24 chr1 179628572 179628862 -63035491 + AluJo SINE Alu 3 294 -18 516 212 91 113 chr1 179628865 179629228 -63035125 - LTR37A LTR ERV1 -54 372 18 974 207 51 25 chr1 179629591 179629640 -63034713 + L1PB4 LINE L1 5643 5689 -467 1615 181 50 0 chr1 179629640 179629983 -63034370 - L1MA6 LINE L1 0 6300 5941 1335 142 48 15 chr1 179629983 179630270 -63034083 + L1MA6 LINE L1 5692 5976 -327 7544 32 3 2 chr1 179630443 179632122 -63032231 - L1PA4 LINE L1 0 6155 4476 2136 143 36 14 chr1 179632420 179632776 -63031577 - THE1B LTR MaLR 0 364 1 23 86 0 0 chr1 179632918 179632976 -63031377 + AT_rich Low_complexity Low_complexity 1 58 0 27 62 0 0 chr1 179633598 179633646 -63030707 + AT_rich Low_complexity Low_complexity 1 48 0 4904 224 42 18 chr1 179634369 179635080 -63029273 + L1MC2 LINE L1 4026 4719 -1625 315 49 0 0 chr1 179635080 179635121 -63029232 + (TATTG)n Simple_repeat Simple_repeat 1 41 0 4904 224 42 18 chr1 179635121 179636639 -63027714 + L1MC2 LINE L1 4719 6307 -37 4442 136 24 29 chr1 179636639 179637428 -63026925 - LTR1 LTR ERV1 0 785 1 4904 224 42 18 chr1 179637428 179637453 -63026900 + L1MC2 LINE L1 6307 6330 -14 22 35 0 0 chr1 179637658 179637687 -63026666 + AT_rich Low_complexity Low_complexity 1 29 0 371 293 160 19 chr1 179638028 179638240 -63026113 - MLT1J LTR MaLR -171 340 99 213 121 0 0 chr1 179638963 179638996 -63025357 + (A)n Simple_repeat Simple_repeat 1 33 0 2170 146 5 55 chr1 179639384 179639781 -63024572 - MER83B LTR ERV1 -1 377 1 183 80 0 0 chr1 179640212 179640237 -63024116 + (A)n Simple_repeat Simple_repeat 1 25 0 2652 188 49 67 chr1 179640250 179640924 -63023429 + LTR8 LTR ERV1 30 691 0 1519 156 7 46 chr1 179641155 179641438 -63022915 + PABL_B LTR ERV1 1 272 -395 240 94 0 0 chr1 179641440 179641472 -63022881 + PABL_A LTR ERV1 309 340 -320 445 31 0 31 chr1 179641704 179641769 -63022584 - L1PA16 LINE L1 0 6166 6104 1397 121 107 0 chr1 179641769 179641993 -63022360 - MER4A LTR ERV1 -1 663 416 1076 190 0 0 chr1 179641995 179642174 -63022179 - MER4A LTR ERV1 -131 533 355 2255 150 0 6 chr1 179642211 179642570 -63021783 - MER4A LTR ERV1 -307 357 1 2703 111 13 3 chr1 179642571 179642960 -63021393 - L1PA16 LINE L1 -59 6107 5715 935 287 89 43 chr1 179642960 179643292 -63021061 - MLT1J2 LTR MaLR -64 386 34 2252 119 59 0 chr1 179643292 179643629 -63020724 - LTR18A LTR ERVL 0 357 1 935 287 89 43 chr1 179643629 179643665 -63020688 - MLT1J2 LTR MaLR -416 34 1 21 36 0 0 chr1 179643824 179643852 -63020501 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 179644472 179644495 -63019858 + AT_rich Low_complexity Low_complexity 1 23 0 514 258 24 48 chr1 179645461 179645628 -63018725 - L2 LINE L2 -5 3308 3146 2198 149 3 3 chr1 179645759 179646121 -63018232 - L1PA13 LINE L1 0 6163 5802 564 289 88 29 chr1 179646274 179646724 -63017629 - L2 LINE L2 -1 3312 2713 2657 42 0 0 chr1 179647675 179647982 -63016371 + AluY SINE Alu 1 307 -4 5442 113 111 62 chr1 179650585 179651701 -63012652 + pTR5 LTR ERV1 742 2021 -417 338 224 31 20 chr1 179651705 179651803 -63012550 + LTR30 LTR ERV1 544 642 -80 1531 104 5 5 chr1 179651806 179652027 -63012326 + pTR5 LTR ERV1 172 392 -2046 321 388 89 24 chr1 179652177 179652933 -63011420 + L2 LINE L2 2252 3057 -215 262 331 35 71 chr1 179653329 179653498 -63010855 + MIR SINE MIR 9 171 -91 241 174 0 0 chr1 179653547 179653593 -63010760 - MER69 DNA AcHobo -47 2479 2434 473 255 125 5 chr1 179653717 179653933 -63010420 - MER69 DNA AcHobo -285 2241 2000 * 1184 292 89 14 chr1 179653921 179654414 -63009939 - MER69 DNA AcHobo -1958 568 39 242 322 0 11 chr1 179654430 179654520 -63009833 + MIR SINE MIR 168 256 -6 26 0 0 0 chr1 179654732 179654758 -63009595 + AT_rich Low_complexity Low_complexity 1 26 0 2016 112 157 19 chr1 179654984 179655309 -63009044 + MSTA LTR MaLR 1 386 -42 240 35 0 0 chr1 179655309 179655338 -63009015 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 2016 112 157 19 chr1 179655338 179655388 -63008965 + MSTA LTR MaLR 386 428 0 445 250 104 65 chr1 179655654 179655914 -63008439 - HAL1 LINE L1 -875 1632 1363 5309 130 39 9 chr1 179656257 179656611 -63007742 - L1PB1 LINE L1 -3 6864 6522 1038 110 0 0 chr1 179656611 179656766 -63007587 + (TA)n Simple_repeat Simple_repeat 2 156 0 5309 130 39 9 chr1 179656766 179657465 -63006888 - L1PB1 LINE L1 -345 6522 5779 9976 183 16 60 chr1 179657499 179658849 -63005504 - L1PB1 LINE L1 -1437 5425 4017 2274 110 3 0 chr1 179658849 179659159 -63005194 - AluSp SINE Alu -2 311 1 9976 183 16 60 chr1 179659159 179661879 -63002474 - L1PB1 LINE L1 -2845 4017 1494 316 272 96 63 chr1 179661937 179662176 -63002177 - HAL1 LINE L1 -1383 1124 878 2081 103 7 30 chr1 179664135 179664436 -62999917 - AluSq SINE Alu -15 298 5 1656 184 14 0 chr1 179665100 179665406 -62998947 + AluJo SINE Alu 1 310 0 672 201 8 22 chr1 179666410 179666544 -62997809 - FLAM_C SINE Alu 0 133 2 1069 232 0 5 chr1 179666810 179667030 -62997323 - MER20 DNA MER1_type 0 219 1 1433 169 48 38 chr1 179667425 179667715 -62996638 - AluJo SINE Alu -19 293 1 387 225 208 8 chr1 179667977 179668097 -62996256 + MIR SINE MIR 104 247 -15 214 369 0 0 chr1 179668098 179668182 -62996171 + L2 LINE L2 2174 2257 -1057 409 367 97 12 chr1 179668472 179668731 -62995622 + L2 LINE L2 2601 2881 -433 198 0 51 51 chr1 179669185 179669224 -62995129 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 369 109 0 0 chr1 179669225 179669280 -62995073 + (TCCCC)n Simple_repeat Simple_repeat 2 56 0 1456 214 11 3 chr1 179669280 179669565 -62994788 - AluJb SINE Alu -19 293 7 266 167 41 5 chr1 179669705 179669754 -62994599 - MLT1G1 LTR MaLR -5 590 544 423 0 0 0 chr1 179669754 179669801 -62994552 + (CA)n Simple_repeat Simple_repeat 2 48 0 266 167 41 5 chr1 179669801 179669827 -62994526 - MLT1G1 LTR MaLR -51 544 457 4219 202 29 15 chr1 179669873 179670817 -62993536 - L1MC2 LINE L1 -134 6628 5672 1955 166 6 6 chr1 179670818 179671149 -62993204 + MER39B LTR ERV1 300 630 -23 1553 253 69 19 chr1 179671158 179671752 -62992601 - L1MC2 LINE L1 -3118 3446 2823 962 250 87 67 chr1 179671766 179672286 -62992067 + LTR38B LTR ERV1 28 541 0 3730 233 62 35 chr1 179672334 179674007 -62990346 - L1MC2 LINE L1 -4841 1723 2 6901 53 28 0 chr1 179674247 179675160 -62989193 - L1PA5 LINE L1 -3 6151 5223 2058 156 120 5 chr1 179676000 179676384 -62987969 - MSTA LTR MaLR 0 428 1 200 333 10 52 chr1 179678102 179678198 -62986155 - MER5A DNA MER1_type -39 150 59 21 0 0 0 chr1 179679536 179679557 -62984796 + AT_rich Low_complexity Low_complexity 1 21 0 1802 233 79 4 chr1 179680005 179680473 -62983880 - LTR53 LTR ERVL -16 503 1 226 200 0 0 chr1 179682038 179682078 -62982275 - MLT1L LTR MaLR -430 185 146 428 217 78 53 chr1 179682508 179682752 -62981601 - L1ME4a LINE L1 -121 6000 5751 21 0 0 0 chr1 179683071 179683092 -62981261 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 179683205 179683226 -62981127 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr1 179683856 179683909 -62980444 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr1 179684344 179684373 -62979980 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 179684820 179684849 -62979504 + AT_rich Low_complexity Low_complexity 1 29 0 210 368 167 6 chr1 179685418 179685592 -62978761 + MIR3 SINE MIR 6 207 -1 237 203 17 59 chr1 179685668 179685786 -62978567 + (TA)n Simple_repeat Simple_repeat 1 113 0 345 287 0 8 chr1 179685914 179686043 -62978310 + (TA)n Simple_repeat Simple_repeat 2 129 0 296 309 94 27 chr1 179686449 179686598 -62977755 + MER112 DNA MER1_type 3 161 -99 186 43 0 0 chr1 179687443 179687466 -62976887 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 437 310 96 43 chr1 179687544 179687825 -62976528 - MLT1I LTR MaLR -16 393 98 27 62 0 0 chr1 179688375 179688423 -62975930 + AT_rich Low_complexity Low_complexity 1 48 0 2764 35 0 0 chr1 179689763 179690081 -62974272 + AluYb8 SINE Alu 1 318 0 1578 110 0 0 chr1 179690081 179690299 -62974054 + AluSg/x SINE Alu 80 297 -12 22 0 0 0 chr1 179690637 179690659 -62973694 + AT_rich Low_complexity Low_complexity 1 22 0 982 296 159 30 chr1 179691958 179692567 -62971786 + L2 LINE L2 2636 3309 -4 757 290 85 71 chr1 179692652 179693132 -62971221 + LTR33 LTR ERVL 33 519 -2 301 336 26 9 chr1 179693232 179693345 -62971008 + MIR3 SINE MIR 69 183 -25 273 261 0 14 chr1 179693512 179693581 -62970772 + MLT1H LTR MaLR 94 161 -388 533 335 67 39 chr1 179693958 179694391 -62969962 + L1MEc LINE L1 34 478 -5918 688 121 0 0 chr1 179694593 179694692 -62969661 - AluJ SINE Alu -16 296 198 723 203 0 0 chr1 179694712 179694845 -62969508 - AluJ SINE Alu -169 133 1 2448 138 3 0 chr1 179694911 179695274 -62969079 + THE1B LTR MaLR 1 364 0 867 276 84 70 chr1 179695276 179695989 -62968364 + L1MEc LINE L1 722 1450 -4946 1590 190 3 34 chr1 179695989 179696167 -62968186 - AluJb SINE Alu -1 311 146 2061 128 0 3 chr1 179696167 179696463 -62967890 - AluSx SINE Alu -17 295 1 1590 190 3 34 chr1 179696463 179696605 -62967748 - AluJb SINE Alu -166 146 1 867 276 84 70 chr1 179696605 179696745 -62967608 + L1MEc LINE L1 1450 1587 -4809 1102 253 56 30 chr1 179696991 179697462 -62966891 - MER39 LTR ERV1 0 707 93 287 279 39 39 chr1 179697448 179697552 -62966801 - LTR48B LTR ERV1 -538 106 3 * 26 0 0 0 chr1 179699229 179699255 -62965098 + AT_rich Low_complexity Low_complexity 1 26 0 200 246 18 0 chr1 179699660 179699717 -62964636 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 262 343 37 45 chr1 179699895 179700029 -62964324 - MER91A DNA MER1_type -40 156 24 387 323 173 18 chr1 179701705 179701925 -62962428 - MIR SINE MIR -6 256 3 217 211 13 53 chr1 179702440 179702516 -62961837 + T-rich Low_complexity Low_complexity 5 77 0 218 326 20 41 chr1 179702781 179702879 -62961474 - MIR SINE MIR -97 111 16 255 31 0 0 chr1 179703770 179703802 -62960551 + (CA)n Simple_repeat Simple_repeat 2 33 0 183 162 0 0 chr1 179703810 179703847 -62960506 + (TA)n Simple_repeat Simple_repeat 2 38 0 29 28 0 0 chr1 179705189 179705225 -62959128 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr1 179705442 179705462 -62958891 + (A)n Simple_repeat Simple_repeat 1 20 0 742 189 8 0 chr1 179706628 179706760 -62957593 - AluJo SINE Alu -178 134 2 277 331 41 35 chr1 179707611 179707732 -62956621 - L2 LINE L2 -8 3305 3181 2159 131 28 3 chr1 179707732 179708084 -62956269 + MER46B DNA MER2_type 1 236 0 277 331 41 35 chr1 179708084 179708107 -62956246 - L2 LINE L2 -132 3181 3160 29 0 0 0 chr1 179708115 179708144 -62956209 + AT_rich Low_complexity Low_complexity 1 29 0 739 311 91 66 chr1 179709019 179709537 -62954816 + MLT1H1 LTR MaLR 24 554 -1 22 35 0 0 chr1 179711180 179711209 -62953144 + AT_rich Low_complexity Low_complexity 1 29 0 229 375 104 11 chr1 179711336 179711616 -62952737 - L2 LINE L2 -579 2735 2430 21 0 0 0 chr1 179712186 179712207 -62952146 + AT_rich Low_complexity Low_complexity 1 21 0 273 383 44 47 chr1 179712492 179713019 -62951334 - L2 LINE L2 -345 2969 2445 449 278 91 23 chr1 179713289 179713465 -62950888 + MIR SINE MIR 9 196 -66 286 228 130 33 chr1 179714520 179714704 -62949649 - L1ME3A LINE L1 -219 5951 5750 2177 72 24 14 chr1 179715061 179715353 -62949000 + AluY SINE Alu 1 295 -16 323 326 44 0 chr1 179715839 179715974 -62948379 - LTR67 LTR ERVL -8 549 409 233 258 0 11 chr1 179716692 179716781 -62947572 + (TATG)n Simple_repeat Simple_repeat 4 91 0 2313 191 9 24 chr1 179716798 179717264 -62947089 + MLT1C LTR MaLR 1 459 -8 207 0 0 0 chr1 179717264 179717287 -62947066 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 309 109 0 0 chr1 179717286 179717332 -62947021 + (CA)n Simple_repeat Simple_repeat 1 46 0 1512 225 68 47 chr1 179717332 179717881 -62946472 - MLT2F LTR ERVL -58 605 1 27 0 0 0 chr1 179718304 179718331 -62946022 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr1 179718633 179718667 -62945686 + AT_rich Low_complexity Low_complexity 1 34 0 1124 107 23 0 chr1 179718669 179718846 -62945507 + L1PB3 LINE L1 5973 6153 -1 261 0 0 0 chr1 179718997 179719026 -62945327 + (CA)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 179719441 179719466 -62944887 + AT_rich Low_complexity Low_complexity 1 25 0 2662 143 18 9 chr1 179720105 179720560 -62943793 - L1PA15 LINE L1 -3 6162 5704 405 373 51 17 chr1 179720814 179721050 -62943303 - L3 LINE CR1 -65 1512 1269 354 242 42 11 chr1 179721773 179721868 -62942485 - LTR65 LTR ERV1 -12 657 560 760 248 74 41 chr1 179722108 179722350 -62942003 - LTR65 LTR ERV1 -255 414 165 504 183 0 0 chr1 179724205 179724287 -62940066 - Tigger5 DNA MER2_type 0 2323 2242 353 221 0 0 chr1 179724277 179724345 -62940008 + Tigger5 DNA MER2_type 2242 2309 -14 * 262 228 0 18 chr1 179724349 179724406 -62939947 - Tigger5 DNA MER2_type -2266 57 2 1200 231 62 7 chr1 179725461 179725768 -62938585 - MER21B LTR ERV1 -60 803 480 1114 255 24 73 chr1 179725767 179726139 -62938214 - MER21B LTR ERV1 -498 365 12 * 234 0 0 0 chr1 179726293 179726319 -62938034 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 181 380 93 9 chr1 179726333 179726441 -62937912 - L2 LINE L2 -9 3263 3147 350 239 45 34 chr1 179727283 179727371 -62936982 + MLT1I LTR MaLR 119 207 -202 1544 124 0 13 chr1 179727884 179728138 -62936215 - AluSg SINE Alu 0 308 58 492 280 184 14 chr1 179728387 179728605 -62935748 + MIR SINE MIR 1 255 -7 188 83 0 56 chr1 179728666 179728702 -62935651 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 255 306 60 0 chr1 179730118 179730252 -62934101 - L1ME LINE L1 -272 5849 5708 27 62 0 0 chr1 179730278 179730326 -62934027 + AT_rich Low_complexity Low_complexity 1 48 0 307 327 133 0 chr1 179730719 179730869 -62933484 - MIR SINE MIR -4 258 89 270 358 28 20 chr1 179733005 179733259 -62931094 + L1MC/D LINE L1 5574 5829 -1979 2039 106 35 0 chr1 179733446 179733728 -62930625 + AluSc SINE Alu 1 292 -17 225 65 0 0 chr1 179734706 179734737 -62929616 - HSMAR1 DNA Mariner 0 1287 1257 1346 130 6 4 chr1 179734746 179734963 -62929390 + MSTA LTR MaLR 212 426 -2 267 128 0 0 chr1 179734963 179735002 -62929351 - MADE1 DNA Mariner -41 39 1 264 292 177 0 chr1 179736146 179736242 -62928111 + L2 LINE L2 3200 3312 -1 318 224 143 20 chr1 179736429 179736527 -62927826 + MLT1C LTR MaLR 6 115 -352 1881 146 135 11 chr1 179736557 179736921 -62927432 + MSTA LTR MaLR 20 428 0 857 259 150 7 chr1 179736921 179737213 -62927140 + MLT1C LTR MaLR 134 467 0 280 335 18 12 chr1 179737213 179737380 -62926973 + L1MCc LINE L1 35 202 -6221 1427 269 88 39 chr1 179737714 179738533 -62925820 + L1MCc LINE L1 761 1621 -4887 2119 231 64 19 chr1 179738536 179739340 -62925013 + L1ME1 LINE L1 5102 5931 -235 641 273 181 4 chr1 179739342 179739613 -62924740 + L2 LINE L2 2995 3313 0 2078 93 23 17 chr1 179740151 179740478 -62923875 - AluSg SINE Alu 0 310 1 271 326 21 49 chr1 179740961 179741105 -62923248 - L3b LINE CR1 -89 1494 1355 1928 98 19 0 chr1 179741225 179741490 -62922863 - AluSx SINE Alu -14 298 29 1117 196 71 39 chr1 179741917 179742228 -62922125 - MER45B DNA AcHobo -7 1033 713 1159 348 81 39 chr1 179742366 179743104 -62921249 - MER45C DNA AcHobo -184 769 1 452 344 100 61 chr1 179743229 179743960 -62920393 + L2 LINE L2 1812 2588 -726 2059 171 5 14 chr1 179743960 179744328 -62920025 + MLT1A1 LTR MaLR 1 365 0 452 344 100 61 chr1 179744328 179744514 -62919839 + L2 LINE L2 2588 2765 -549 1739 181 114 53 chr1 179744551 179745025 -62919328 + MLT1D LTR MaLR 1 503 -2 298 133 0 0 chr1 179745652 179745697 -62918656 + MADE1 DNA Mariner 1 45 -35 1967 204 55 5 chr1 179746075 179746621 -62917732 + L1MCa LINE L1 18 1927 -4499 * 3752 245 14 25 chr1 179746595 179747070 -62917283 + L1MCa LINE L1 2263 2742 -3684 1814 141 94 24 chr1 179747070 179747410 -62916943 + THE1B LTR MaLR 1 364 0 11127 96 24 1 chr1 179747410 179748954 -62915399 + THE1B-int LTR MaLR 1 1580 0 1970 152 48 22 chr1 179748955 179749310 -62915043 + THE1B LTR MaLR 1 364 0 3752 245 14 25 chr1 179749310 179750319 -62914034 + L1MCa LINE L1 2740 3732 -2694 450 342 157 16 chr1 179750387 179750885 -62913468 - L2 LINE L2 -217 3096 2528 21 36 0 0 chr1 179750904 179750932 -62913421 + AT_rich Low_complexity Low_complexity 1 28 0 1560 204 3 0 chr1 179750932 179751221 -62913132 - AluJo SINE Alu -22 290 1 417 348 101 25 chr1 179751266 179751622 -62912731 - L2 LINE L2 -1102 2212 1830 28 0 0 0 chr1 179752384 179752412 -62911941 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 179752487 179752511 -62911842 + AT_rich Low_complexity Low_complexity 1 24 0 235 307 9 9 chr1 179752523 179752637 -62911716 + L1MEd LINE L1 961 1074 -5045 311 397 65 28 chr1 179752789 179753114 -62911239 - L2 LINE L2 -2881 433 97 23 0 0 0 chr1 179754017 179754040 -62910313 + AT_rich Low_complexity Low_complexity 1 23 0 313 101 49 9 chr1 179754045 179754106 -62910247 - MLT2B1 LTR ERVL 0 520 397 2182 158 59 97 chr1 179754130 179754638 -62909715 - MLT2B1 LTR ERVL -31 489 1 2334 49 0 13 chr1 179756192 179756496 -62907857 - AluY SINE Alu -11 300 1 298 319 97 0 chr1 179756673 179756786 -62907567 + L2 LINE L2 3178 3301 -12 29 47 0 0 chr1 179757117 179757160 -62907193 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr1 179759242 179759264 -62905089 + AT_rich Low_complexity Low_complexity 1 22 0 214 240 0 0 chr1 179759886 179759936 -62904417 + CT-rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr1 179760412 179760440 -62903913 + AT_rich Low_complexity Low_complexity 1 28 0 425 191 0 12 chr1 179761082 179761166 -62903187 - MLT1A1 LTR MaLR 0 365 283 1312 212 0 23 chr1 179761221 179761485 -62902868 - MLT1A1 LTR MaLR -85 280 23 213 94 0 0 chr1 179762197 179762229 -62902124 + (TG)n Simple_repeat Simple_repeat 2 33 0 182 264 11 81 chr1 179762492 179762579 -62901774 - L2 LINE L2 -3 3310 3230 47 53 0 0 chr1 179763468 179763543 -62900810 + AT_rich Low_complexity Low_complexity 1 75 0 345 125 0 0 chr1 179763646 179763702 -62900651 + (A)n Simple_repeat Simple_repeat 1 56 0 484 299 195 22 chr1 179764067 179764385 -62899968 + MLT1J LTR MaLR 110 482 -29 29 0 0 0 chr1 179765238 179765267 -62899086 + AT_rich Low_complexity Low_complexity 1 29 0 454 222 153 6 chr1 179767800 179767976 -62896377 - HAL1 LINE L1 -295 2212 2011 339 284 25 94 chr1 179768176 179768377 -62895976 + HAL1 LINE L1 1579 1765 -742 1916 87 40 4 chr1 179768751 179769027 -62895326 - L1PA8 LINE L1 -2 6170 5885 1847 158 27 0 chr1 179769665 179769957 -62894396 - AluSx SINE Alu -12 300 1 40 67 0 0 chr1 179769994 179770069 -62894284 + AT_rich Low_complexity Low_complexity 1 75 0 288 361 162 31 chr1 179770347 179771086 -62893267 + L3 LINE CR1 632 1467 -110 22 0 0 0 chr1 179771258 179771280 -62893073 + AT_rich Low_complexity Low_complexity 1 22 0 321 316 20 0 chr1 179771286 179771384 -62892969 - L2 LINE L2 -1 3312 3213 1655 246 11 46 chr1 179771398 179771919 -62892434 + MLT1D LTR MaLR 3 505 0 711 220 29 26 chr1 179771986 179772194 -62892159 + MLT1J2 LTR MaLR 1 242 -269 724 266 54 0 chr1 179772581 179772784 -62891569 - MER20 DNA MER1_type 0 219 6 2565 156 19 2 chr1 179773113 179773543 -62890810 - L1PA16 LINE L1 -2 6164 5728 675 185 0 0 chr1 179773543 179773662 -62890691 + L1PA16 LINE L1 5582 5700 -466 183 129 0 0 chr1 179773690 179773721 -62890632 + (GA)n Simple_repeat Simple_repeat 1 31 0 2211 100 0 0 chr1 179774843 179775133 -62889220 - AluSc SINE Alu -19 290 1 249 211 19 0 chr1 179775187 179775239 -62889114 + (CA)n Simple_repeat Simple_repeat 2 54 0 32 86 0 0 chr1 179778878 179778959 -62885394 + AT_rich Low_complexity Low_complexity 1 81 0 2118 128 0 0 chr1 179780631 179780928 -62883425 + AluSx SINE Alu 1 297 -15 581 283 120 37 chr1 179780992 179781374 -62882979 + L2 LINE L2 1607 2020 -1294 1512 214 100 12 chr1 179781477 179781897 -62882456 - MSTB2 LTR MaLR 0 457 1 440 282 48 38 chr1 179781897 179782106 -62882247 + MLT2F LTR ERVL 104 314 -349 357 350 117 41 chr1 179782112 179782437 -62881916 + L2 LINE L2 2740 3079 -234 7084 65 1 7 chr1 179782452 179783391 -62880962 - L1PA8 LINE L1 -3 6169 5237 390 223 119 104 chr1 179783485 179783678 -62880675 + MER58C DNA MER1_type 2 197 -18 21 71 0 0 chr1 179784384 179784426 -62879927 + AT_rich Low_complexity Low_complexity 1 42 0 189 94 0 0 chr1 179785392 179785424 -62878929 + (T)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr1 179785661 179785692 -62878661 + AT_rich Low_complexity Low_complexity 1 31 0 422 286 74 23 chr1 179785783 179785958 -62878395 - L1ME LINE L1 -466 5698 5515 208 271 0 0 chr1 179785962 179786021 -62878332 - MIR SINE MIR -65 197 139 259 244 83 119 chr1 179787254 179787422 -62876931 - MIR SINE MIR -21 241 80 215 154 26 0 chr1 179787933 179787972 -62876381 - MIR SINE MIR -26 236 197 685 287 57 10 chr1 179788127 179788336 -62876017 + MIR SINE MIR 39 257 -5 335 344 53 13 chr1 179788435 179788586 -62875767 + MIR3 SINE MIR 45 201 -7 24 53 0 0 chr1 179789597 179789635 -62874718 + AT_rich Low_complexity Low_complexity 1 38 0 787 236 29 0 chr1 179789777 179789951 -62874402 + MER58A DNA MER1_type 46 224 0 402 21 0 0 chr1 179790607 179790654 -62873699 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr1 179791310 179791338 -62873015 + AT_rich Low_complexity Low_complexity 1 28 0 217 315 11 22 chr1 179792084 179792173 -62872180 - MIR SINE MIR -109 153 66 374 310 76 25 chr1 179793383 179793580 -62870773 + MIR SINE MIR 53 259 -3 205 51 51 0 chr1 179795150 179795189 -62869164 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 470 255 0 0 chr1 179795539 179795645 -62868708 + L1MDa LINE L1 53 158 -6382 1490 223 34 21 chr1 179795756 179796141 -62868212 - MLT1B LTR MaLR 0 390 1 1359 276 38 38 chr1 179796259 179796468 -62867885 + L1MDa LINE L1 173 381 -6162 360 0 0 0 chr1 179796468 179796508 -62867845 + (CA)n Simple_repeat Simple_repeat 1 40 0 1359 276 38 38 chr1 179796508 179797008 -62867345 + L1MDa LINE L1 381 1229 -5314 321 253 84 0 chr1 179797032 179797115 -62867238 - L2 LINE L2 0 3272 3183 240 225 141 14 chr1 179797150 179797292 -62867061 + L1MDa LINE L1 1195 1354 -5186 351 0 0 0 chr1 179798059 179798098 -62866255 + (TG)n Simple_repeat Simple_repeat 1 39 0 25 51 0 0 chr1 179798099 179798138 -62866215 + AT_rich Low_complexity Low_complexity 1 39 0 320 276 51 73 chr1 179798252 179798400 -62865953 - L1ME LINE L1 -298 5823 5682 1507 206 50 21 chr1 179798400 179798779 -62865574 - MLT1B LTR MaLR 0 390 1 320 276 51 73 chr1 179798779 179798905 -62865448 - L1ME LINE L1 -439 5682 5555 384 263 91 57 chr1 179799281 179799456 -62864897 + MLT1I LTR MaLR 1 181 -228 286 331 90 0 chr1 179799504 179799637 -62864716 + MLT1I LTR MaLR 263 407 -2 37 69 0 0 chr1 179799687 179799759 -62864594 + AT_rich Low_complexity Low_complexity 1 72 0 765 226 45 36 chr1 179800257 179800566 -62863787 + L1MDa LINE L1 2424 2735 -3986 899 258 24 76 chr1 179800582 179800923 -62863430 - LTR41 LTR ERVL -14 759 437 798 263 19 19 chr1 179800923 179801136 -62863217 - MER58A DNA MER1_type 0 224 12 241 318 135 6 chr1 179801147 179801317 -62863036 - LTR41 LTR ERVL -329 444 253 2751 16 0 0 chr1 179801454 179801762 -62862591 + AluYa5 SINE Alu 1 308 -3 610 202 8 0 chr1 179801920 179802039 -62862314 - FLAM_A SINE Alu -15 127 8 25 51 0 0 chr1 179802058 179802097 -62862256 + AT_rich Low_complexity Low_complexity 1 39 0 230 81 27 0 chr1 179802165 179802202 -62862151 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 2611 179 10 8 chr1 179802250 179802753 -62861600 - L1PB2 LINE L1 -7 6144 5641 6696 181 41 15 chr1 179802853 179803339 -62861014 - L1PB2 LINE L1 -502 5649 5177 180 0 0 0 chr1 179803339 179803359 -62860994 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6696 181 41 15 chr1 179803359 179803692 -62860661 - L1PB2 LINE L1 -974 5177 4854 2046 134 0 7 chr1 179803692 179803997 -62860356 - AluSx SINE Alu -9 303 1 6696 181 41 15 chr1 179803997 179805004 -62859349 - L1PB2 LINE L1 -1297 4854 3787 458 76 0 0 chr1 179805011 179805077 -62859276 - AluSc SINE Alu -5 304 239 296 187 53 13 chr1 179805129 179805204 -62859149 - L1M4 LINE L1 -2194 3952 3875 21 0 0 0 chr1 179805987 179806008 -62858345 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 179806391 179806416 -62857937 + AT_rich Low_complexity Low_complexity 1 25 0 527 296 192 25 chr1 179806496 179806551 -62857802 - LTR50 LTR ERVL -32 763 719 2187 103 3 3 chr1 179806551 179806862 -62857491 + AluY SINE Alu 1 311 0 527 296 192 25 chr1 179806862 179807379 -62856974 - LTR50 LTR ERVL -76 719 1 2253 209 57 61 chr1 179808143 179808797 -62855556 - L1MC3 LINE L1 0 7785 7135 322 303 49 22 chr1 179808804 179809071 -62855282 - L1M4 LINE L1 -1761 4385 4112 22 56 0 0 chr1 179809235 179809271 -62855082 + AT_rich Low_complexity Low_complexity 1 36 0 375 182 0 0 chr1 179809386 179809463 -62854890 + (TG)n Simple_repeat Simple_repeat 2 78 0 339 321 65 16 chr1 179809878 179810062 -62854291 + L2 LINE L2 3121 3313 0 1612 183 107 25 chr1 179810587 179811018 -62853335 + LTR54B LTR ERV1 31 496 -2 40 59 0 0 chr1 179811359 179811427 -62852926 + AT_rich Low_complexity Low_complexity 1 68 0 2157 93 7 10 chr1 179811478 179811778 -62852575 - AluY SINE Alu -12 299 1 2545 161 56 4 chr1 179812370 179812831 -62851522 - MER31A LTR ERV1 0 485 1 22 0 0 0 chr1 179812959 179812981 -62851372 + AT_rich Low_complexity Low_complexity 1 22 0 3486 105 219 120 chr1 179813144 179814528 -62849825 - pTR5 LTR ERV1 0 2438 375 32 57 0 0 chr1 179814684 179814737 -62849616 + AT_rich Low_complexity Low_complexity 1 53 0 4795 198 51 16 chr1 179814737 179815826 -62848527 - L1MC3 LINE L1 -40 7745 6619 1854 187 5 22 chr1 179816220 179816589 -62847764 - MLT1A1 LTR MaLR -2 363 1 1739 177 0 31 chr1 179816978 179817300 -62847053 - AluJb SINE Alu 0 312 1 229 296 80 0 chr1 179818359 179818447 -62845906 + MIR SINE MIR 168 262 0 213 333 0 0 chr1 179818494 179818554 -62845799 - MIR SINE MIR -62 146 87 2189 109 3 0 chr1 179818932 179819234 -62845119 - AluSq SINE Alu -10 303 1 231 61 0 0 chr1 179821042 179821075 -62843278 + (TC)n Simple_repeat Simple_repeat 2 34 0 687 117 128 2 chr1 179821240 179821252 -62843101 - L1M LINE L1 -706 5415 5406 3914 154 19 4 chr1 179821252 179821954 -62842399 - L1PA16 LINE L1 -2 6164 5453 687 117 128 2 chr1 179821954 179822055 -62842298 - L1M LINE L1 -715 5406 5284 189 0 0 0 chr1 179822055 179822076 -62842277 + (TTG)n Simple_repeat Simple_repeat 1 21 0 687 117 128 2 chr1 179822076 179822103 -62842250 - L1M LINE L1 -837 5284 5262 216 86 0 0 chr1 179822554 179822589 -62841764 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1954 141 0 7 chr1 179822591 179822875 -62841478 - AluSx SINE Alu -30 282 1 363 106 0 0 chr1 179823199 179823265 -62841088 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 751 205 35 32 chr1 179823392 179823618 -62840735 + MLT1E2 LTR MaLR 7 235 -270 570 120 51 0 chr1 179823618 179823735 -62840618 + G-rich Low_complexity Low_complexity 5 127 0 370 336 108 28 chr1 179823931 179824219 -62840134 + L2 LINE L2 2773 3083 -189 1339 114 85 0 chr1 179824286 179824497 -62839856 + MER30 DNA MER1_type 2 230 0 183 237 0 0 chr1 179824560 179824598 -62839755 + L2 LINE L2 3259 3296 -17 28 29 0 0 chr1 179824833 179824868 -62839485 + AT_rich Low_complexity Low_complexity 1 35 0 1004 279 52 49 chr1 179827184 179827387 -62836966 + L2 LINE L2 2356 2557 -756 2093 101 4 0 chr1 179827387 179827688 -62836665 - AluSx SINE Alu 0 305 4 1004 279 52 49 chr1 179827688 179828134 -62836219 + L2 LINE L2 2557 3134 -179 906 267 45 4 chr1 179828137 179828384 -62835969 - MIR SINE MIR 0 262 6 403 312 28 7 chr1 179828409 179828550 -62835803 + L2 LINE L2 3160 3303 -10 27 0 0 0 chr1 179829031 179829058 -62835295 + AT_rich Low_complexity Low_complexity 1 27 0 1329 128 110 59 chr1 179829701 179829991 -62834362 - L1MB1 LINE L1 -472 5696 5392 2244 190 35 22 chr1 179829991 179830480 -62833873 + L1MB1 LINE L1 5673 6167 -1 26 50 0 0 chr1 179831205 179831245 -62833108 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr1 179831424 179831447 -62832906 + AT_rich Low_complexity Low_complexity 1 23 0 17351 25 0 0 chr1 179831805 179834629 -62829724 - L1PA3 LINE L1 0 6155 3333 204 246 82 16 chr1 179835717 179835778 -62828575 - L2 LINE L2 -54 3259 3195 1129 223 21 0 chr1 179836621 179836904 -62827449 - L1MA4 LINE L1 -5 6295 6007 2022 153 42 14 chr1 179837106 179837460 -62826893 + THE1B LTR MaLR 1 364 0 10921 108 8 13 chr1 179837460 179837887 -62826466 + THE1B-int LTR MaLR 1 429 -1151 1974 137 13 3 chr1 179837887 179838186 -62826167 - AluSx SINE Alu -10 302 1 10921 108 8 13 chr1 179838186 179839347 -62825006 + THE1B-int LTR MaLR 429 1580 0 2368 123 37 0 chr1 179839347 179839698 -62824655 + THE1B LTR MaLR 1 364 0 321 279 21 68 chr1 179841442 179841632 -62822721 + HAL1b LINE L1 223 403 -945 1191 263 68 91 chr1 179842107 179843169 -62821184 + L1MC5 LINE L1 6477 7519 -442 26 64 0 0 chr1 179843394 179843441 -62820912 + AT_rich Low_complexity Low_complexity 1 47 0 276 53 0 0 chr1 179843996 179844034 -62820319 + (TG)n Simple_repeat Simple_repeat 1 38 0 189 354 24 24 chr1 179844599 179844681 -62819672 - MIR SINE MIR -155 107 26 217 333 122 24 chr1 179844904 179845027 -62819326 + L2 LINE L2 3138 3272 0 378 284 79 42 chr1 179845158 179845348 -62819005 - MIR SINE MIR -4 258 62 21 0 0 0 chr1 179846150 179846171 -62818182 + AT_rich Low_complexity Low_complexity 1 21 0 253 271 43 0 chr1 179847988 179848058 -62816295 + L2 LINE L2 3240 3312 -1 3154 199 45 35 chr1 179850476 179851228 -62813125 - L1MB7 LINE L1 -20 6662 5903 225 141 61 0 chr1 179851239 179851338 -62813015 + (TA)n Simple_repeat Simple_repeat 2 106 0 1383 252 158 21 chr1 179851419 179852039 -62812314 - L1MB7 LINE L1 -748 5896 5192 303 232 14 0 chr1 179852042 179852111 -62812242 + L1M4 LINE L1 5021 5090 -1056 972 253 39 43 chr1 179852153 179853175 -62811178 - L1MB7 LINE L1 -2507 4137 3113 1883 163 0 3 chr1 179853175 179853475 -62810878 + AluSx SINE Alu 1 299 -13 972 253 39 43 chr1 179853475 179853700 -62810653 - L1MB7 LINE L1 -3531 3113 2889 1486 209 26 6 chr1 179853700 179854040 -62810313 - L1MA6 LINE L1 -3 6297 5951 972 253 39 43 chr1 179854040 179854454 -62809899 - L1MB7 LINE L1 -3755 2889 2242 232 219 0 114 chr1 179854491 179854596 -62809757 - L1MC4 LINE L1 -1337 6705 6613 1388 241 74 31 chr1 179854607 179855026 -62809327 - L1MB7 LINE L1 -6101 441 5 2155 257 30 12 chr1 179856321 179856921 -62807432 - MER90 LTR ERV1 0 614 4 2649 103 3 14 chr1 179858110 179858478 -62805875 - THE1B LTR MaLR 0 364 1 195 42 0 0 chr1 179858487 179858511 -62805842 + (CA)n Simple_repeat Simple_repeat 2 25 0 314 189 43 18 chr1 179858514 179858678 -62805675 + (TA)n Simple_repeat Simple_repeat 2 169 0 535 171 13 6 chr1 179858680 179858834 -62805519 - LTR37B LTR ERV1 -210 258 7 5612 178 45 11 chr1 179859315 179861548 -62802805 - L1MA4A LINE L1 0 7005 4698 * 13485 216 37 23 chr1 179861542 179864427 -62799926 - L1PA15 LINE L1 -2 6814 3970 183 42 0 0 chr1 179864427 179864451 -62799902 + (CAA)n Simple_repeat Simple_repeat 1 24 0 13485 216 37 23 chr1 179864451 179865009 -62799344 - L1PA15 LINE L1 -2846 3970 3421 2099 112 3 3 chr1 179865009 179865304 -62799049 - AluY SINE Alu -16 295 1 13485 216 37 23 chr1 179865304 179866106 -62798247 - L1PA15 LINE L1 -3395 3421 2631 2014 153 16 47 chr1 179866106 179866493 -62797860 + THE1C LTR MaLR 1 375 0 13485 216 37 23 chr1 179866493 179867844 -62796509 - L1PA15 LINE L1 -4185 2631 1111 9960 224 24 60 chr1 179868280 179873163 -62791190 - L1MA4A LINE L1 -2135 4713 10 756 256 87 5 chr1 179873515 179873722 -62790631 + MER58A DNA MER1_type 1 224 0 6695 185 12 39 chr1 179874025 179876472 -62787881 - L1PA15 LINE L1 -21 6144 3750 227 260 31 31 chr1 179876657 179876784 -62787569 - L1MEc LINE L1 -5194 1202 1076 21 36 0 0 chr1 179876904 179876932 -62787421 + AT_rich Low_complexity Low_complexity 1 28 0 203 179 0 0 chr1 179877018 179877057 -62787296 + T-rich Low_complexity Low_complexity 1 39 0 368 291 52 100 chr1 179877146 179877417 -62786936 + LTR33A LTR ERVL 156 413 -110 1107 248 92 92 chr1 179877473 179878026 -62786327 - MER90 LTR ERV1 -22 553 1 2141 132 0 0 chr1 179878734 179879038 -62785315 + AluSx SINE Alu 1 304 -8 269 296 0 23 chr1 179879807 179879895 -62784458 + MIR SINE MIR 70 155 -107 232 281 0 0 chr1 179880146 179880203 -62784150 - L2 LINE L2 -2 3311 3255 243 0 0 0 chr1 179880356 179880383 -62783970 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 1996 99 3 14 chr1 179880392 179880684 -62783669 - AluY SINE Alu -22 289 1 1346 134 60 0 chr1 179881598 179881814 -62782539 + MER30 DNA MER1_type 1 229 -1 1526 104 17 4 chr1 179881870 179882111 -62782242 - L1MA2 LINE L1 0 6304 6061 31 0 0 0 chr1 179882280 179882311 -62782042 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr1 179882358 179882398 -62781955 + AT_rich Low_complexity Low_complexity 1 40 0 183 156 0 0 chr1 179884639 179884671 -62779682 + (CATA)n Simple_repeat Simple_repeat 4 35 0 294 123 71 7 chr1 179885637 179885791 -62778562 + (TA)n Simple_repeat Simple_repeat 1 164 0 236 324 169 0 chr1 179885804 179885940 -62778413 + MIR SINE MIR 102 260 -2 385 284 128 21 chr1 179886091 179886334 -62778019 + L2 LINE L2 1626 1894 -1420 734 306 50 17 chr1 179886341 179886638 -62777715 + L2 LINE L2 2066 2372 -942 302 236 16 57 chr1 179886938 179887010 -62777343 + Charlie4 DNA MER1_type 1816 1883 -78 2385 123 48 0 chr1 179887010 179887368 -62776985 - THE1C LTR MaLR 0 375 1 302 236 16 57 chr1 179887368 179887418 -62776935 + Charlie4 DNA MER1_type 1883 1933 -28 627 237 0 0 chr1 179887452 179887591 -62776762 - FLAM_A SINE Alu -3 139 1 2556 7 0 0 chr1 179887973 179888253 -62776100 + AluYa5 SINE Alu 30 309 -2 485 185 42 101 chr1 179889411 179889600 -62774753 + LTR52 LTR ERVL 3 180 -241 526 192 87 91 chr1 179889699 179889907 -62774446 + LTR52 LTR ERVL 198 404 -17 354 337 28 39 chr1 179890106 179890284 -62774069 + MER5A DNA MER1_type 12 187 -2 283 57 29 43 chr1 179890660 179890730 -62773623 + (TA)n Simple_repeat Simple_repeat 1 69 0 1907 106 38 20 chr1 179890893 179891186 -62773167 + AluSc SINE Alu 1 298 -11 363 292 37 31 chr1 179891749 179891910 -62772443 - L1M4 LINE L1 -953 5193 5032 564 278 45 28 chr1 179891959 179892246 -62772107 - L1M4 LINE L1 -1296 4850 4564 792 256 16 39 chr1 179892248 179892553 -62771800 - L1M4 LINE L1 -3174 2972 2675 1670 35 0 0 chr1 179892555 179892753 -62771600 + L1PA4 LINE L1 5956 6153 -2 230 274 28 19 chr1 179892787 179892893 -62771460 - L1M4 LINE L1 -3702 2444 2338 292 362 36 15 chr1 179893244 179893440 -62770913 + LTR16C LTR ERVL 214 413 -78 2953 152 61 6 chr1 179893630 179894155 -62770198 + MER41C LTR ERV1 1 554 0 386 192 27 0 chr1 179894496 179894569 -62769784 + LTR16C LTR ERVL 417 491 0 1062 317 65 24 chr1 179894590 179895003 -62769350 - LTR16A LTR ERVL 0 450 21 31 0 0 0 chr1 179895039 179895070 -62769283 + AT_rich Low_complexity Low_complexity 1 31 0 1860 149 7 3 chr1 179895776 179896065 -62768288 + AluSx SINE Alu 5 294 -18 3274 175 41 2 chr1 179896094 179896722 -62767631 + MER39B LTR ERV1 1 653 0 1210 212 69 114 chr1 179897161 179897712 -62766641 + LTR49 LTR ERV1 1 526 -69 26 0 0 0 chr1 179897766 179897792 -62766561 + AT_rich Low_complexity Low_complexity 1 26 0 337 257 95 92 chr1 179897833 179898191 -62766162 + LTR49-int LTR ERV1 38 396 -5935 1477 141 190 7 chr1 179898193 179898483 -62765870 - MSTA LTR MaLR 0 428 86 792 193 59 10 chr1 179898483 179898701 -62765652 - MER61D LTR ERV1 0 749 271 497 171 20 8 chr1 179899080 179899188 -62765165 - MSTA LTR MaLR -260 115 1 367 245 36 65 chr1 179899570 179899752 -62764601 + LTR49-int LTR ERV1 1554 2192 -4071 357 183 263 50 chr1 179899820 179900082 -62764271 + MER31-int LTR ERV1 1100 1417 -3519 33 73 0 0 chr1 179900571 179900639 -62763714 + AT_rich Low_complexity Low_complexity 1 68 0 459 244 82 72 chr1 179900646 179900937 -62763416 + MER31-int LTR ERV1 1686 1979 -2957 355 242 116 89 chr1 179900955 179901248 -62763105 + MER31-int LTR ERV1 2707 3007 -1873 4461 209 59 39 chr1 179901340 179902632 -62761721 + MER31-int LTR ERV1 3930 5247 -1084 465 205 189 8 chr1 179902692 179902814 -62761539 + MER31-int LTR ERV1 5225 5368 -963 610 167 79 24 chr1 179902931 179903057 -62761296 - MSTC LTR MaLR 0 428 296 464 126 32 4 chr1 179903090 179903102 -62761251 - MSTC LTR MaLR -324 104 94 2095 115 0 0 chr1 179903102 179903389 -62760964 + AluSg SINE Alu 5 291 -19 464 126 32 4 chr1 179903389 179903466 -62760887 - MSTC LTR MaLR -334 94 7 2559 263 95 47 chr1 179903484 179905000 -62759353 - MSTC-int LTR MaLR -15 1511 2 2214 204 17 0 chr1 179905002 179905423 -62758930 - MSTC LTR MaLR 0 428 1 444 195 19 94 chr1 179905673 179905832 -62758521 - MER104 DNA Tc2 -3 177 31 332 133 17 0 chr1 179906613 179906673 -62757680 + (CA)n Simple_repeat Simple_repeat 1 61 0 769 362 111 43 chr1 179907633 179908517 -62755836 + L2 LINE L2 87 1030 -2284 249 197 158 40 chr1 179908518 179908594 -62755759 + MER67D LTR ERV1 1 85 -429 1901 122 3 49 chr1 179908605 179908909 -62755444 - AluSq SINE Alu -23 290 1 786 306 46 44 chr1 179908910 179909345 -62755008 + L2 LINE L2 1984 2419 -895 2118 260 80 16 chr1 179909349 179910277 -62754076 - L1ME1 LINE L1 -49 6117 5135 1936 234 131 22 chr1 179910272 179911091 -62753262 + L1ME1 LINE L1 4203 5110 -1036 * 1389 187 59 42 chr1 179911824 179912171 -62752182 - MER47B DNA MER2_type -2 416 1 338 312 40 8 chr1 179912321 179912446 -62751907 - L2 LINE L2 -5 3308 3180 23 0 0 0 chr1 179912645 179912668 -62751685 + AT_rich Low_complexity Low_complexity 1 23 0 370 285 34 69 chr1 179914130 179914380 -62749973 - L1ME LINE L1 -447 5723 5482 1797 113 0 0 chr1 179914380 179914651 -62749702 - AluY SINE Alu 0 305 35 370 285 34 69 chr1 179914651 179914690 -62749663 - L1ME LINE L1 -688 5482 5443 417 301 82 15 chr1 179914798 179915113 -62749240 - L1ME LINE L1 -743 5403 5106 225 297 27 27 chr1 179915244 179915288 -62749065 + (TA)n Simple_repeat Simple_repeat 1 44 -104 2797 10 0 0 chr1 179915288 179915598 -62748755 - AluYb8 SINE Alu -8 310 1 225 297 27 27 chr1 179915598 179915701 -62748652 + (TA)n Simple_repeat Simple_repeat 43 148 0 23 33 0 0 chr1 179915978 179916008 -62748345 + AT_rich Low_complexity Low_complexity 1 30 0 288 172 0 0 chr1 179916381 179916439 -62747914 + T-rich Low_complexity Low_complexity 1 58 0 297 175 63 0 chr1 179916844 179916907 -62747446 - L1MA9 LINE L1 0 6312 6246 608 346 130 22 chr1 179917857 179918750 -62745603 + L2 LINE L2 2304 3313 0 194 290 146 25 chr1 179918759 179918939 -62745414 + MIR SINE MIR 4 209 -53 * 412 315 33 27 chr1 179918935 179919119 -62745234 - MIR SINE MIR 0 262 78 25 0 0 0 chr1 179919350 179919375 -62744978 + AT_rich Low_complexity Low_complexity 1 25 0 2153 148 11 19 chr1 179919397 179919775 -62744578 - THE1C LTR MaLR 0 375 1 26 50 0 0 chr1 179919985 179920025 -62744328 + AT_rich Low_complexity Low_complexity 1 40 0 529 242 129 52 chr1 179920821 179921015 -62743338 - MIR SINE MIR -42 220 12 214 292 73 88 chr1 179921464 179921656 -62742697 - L2 LINE L2 -1 3312 3124 185 154 26 0 chr1 179921690 179921729 -62742624 + GA-rich Low_complexity Low_complexity 4 43 0 2202 82 0 30 chr1 179922318 179922622 -62741731 - AluY SINE Alu -16 295 1 458 91 13 0 chr1 179923728 179923805 -62740548 + (CA)n Simple_repeat Simple_repeat 2 79 0 2365 168 29 2 chr1 179924634 179925051 -62739302 + MSTA LTR MaLR 1 428 0 1298 257 62 73 chr1 179925193 179925737 -62738616 - MLT1G LTR MaLR 0 590 53 21 36 0 0 chr1 179925852 179925880 -62738473 + AT_rich Low_complexity Low_complexity 1 28 0 1382 190 70 50 chr1 179927217 179927575 -62736778 - MLT1A1 LTR MaLR 0 365 1 12504 183 23 14 chr1 179928107 179931249 -62733104 + L1PA16 LINE L1 1 3068 -3781 631 258 58 26 chr1 179931261 179931536 -62732817 - L1P LINE L1 -3388 2758 2476 961 154 31 10 chr1 179931548 179931734 -62732619 + MER30 DNA MER1_type 36 230 0 599 160 24 0 chr1 179931735 179931860 -62732493 + L1PA16 LINE L1 3062 3189 -3660 * 4799 180 43 37 chr1 179931857 179931990 -62732363 + L1PA16 LINE L1 4898 5029 -1840 2026 92 64 0 chr1 179931990 179932271 -62732082 - AluSp SINE Alu -12 301 3 4799 180 43 37 chr1 179932271 179933976 -62730377 + L1PA16 LINE L1 5029 6720 -149 1900 148 7 0 chr1 179933976 179934274 -62730079 + AluSx SINE Alu 12 311 -1 4799 180 43 37 chr1 179934274 179934416 -62729937 + L1PA16 LINE L1 6720 6860 -9 296 321 85 0 chr1 179934620 179934726 -62729627 + MIR SINE MIR 37 151 -111 238 121 17 17 chr1 179934779 179934837 -62729516 + (CA)n Simple_repeat Simple_repeat 2 59 0 241 190 17 0 chr1 179935017 179935075 -62729278 + CT-rich Low_complexity Low_complexity 1 59 0 40 21 0 0 chr1 179935372 179935419 -62728934 + AT_rich Low_complexity Low_complexity 1 47 0 388 284 45 0 chr1 179935939 179936027 -62728326 + MLT1K LTR MaLR 72 163 -425 2047 222 33 21 chr1 179936092 179936606 -62727747 - L1MA9 LINE L1 -38 6274 5755 240 310 0 0 chr1 179936741 179936812 -62727541 + MLT1K LTR MaLR 378 448 -140 23 78 0 0 chr1 179936850 179936901 -62727452 + AT_rich Low_complexity Low_complexity 1 51 0 725 212 6 18 chr1 179937516 179937681 -62726672 - MER3 DNA MER1_type -87 122 7 232 303 95 9 chr1 179937697 179937805 -62726548 + MER5A DNA MER1_type 4 133 -56 26 50 0 0 chr1 179938277 179938317 -62726036 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr1 179938409 179938431 -62725922 + AT_rich Low_complexity Low_complexity 1 22 0 962 262 49 117 chr1 179938802 179939512 -62724841 - MER21B LTR ERV1 -149 714 53 333 283 65 0 chr1 179939737 179939829 -62724524 + MER63A DNA MER1_type 113 210 0 1401 169 11 23 chr1 179940512 179940773 -62723580 + MLT2D LTR ERVL 1 258 -156 2143 196 80 2 chr1 179940773 179941197 -62723156 - LTR32 LTR ERVL 0 471 15 661 182 63 44 chr1 179941196 179941355 -62722998 + MLT2D LTR ERVL 253 414 0 * 373 343 27 0 chr1 179942878 179943024 -62721329 - MER5B DNA MER1_type -12 166 17 262 265 15 15 chr1 179943054 179943122 -62721231 + MLT2D LTR ERVL 178 245 -169 252 362 26 13 chr1 179943283 179943435 -62720918 - MER5A DNA MER1_type -9 180 27 1240 62 91 6 chr1 179943534 179943710 -62720643 + AluY SINE Alu 120 310 -1 22 23 0 45 chr1 179943743 179943761 -62720592 + AT_rich Low_complexity Low_complexity 1 18 -24 2195 65 0 65 chr1 179943761 179944071 -62720282 + AluY SINE Alu 2 291 -20 22 23 0 45 chr1 179944071 179944096 -62720257 + AT_rich Low_complexity Low_complexity 18 42 0 208 122 49 0 chr1 179944161 179944202 -62720151 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 225 311 7 39 chr1 179944203 179944408 -62719945 + CT-rich Low_complexity Low_complexity 1 198 0 7090 56 0 0 chr1 179946220 179947216 -62717137 - L1PA7 LINE L1 0 6154 5158 454 73 176 0 chr1 179948079 179948147 -62716206 + MADE1 DNA Mariner 1 80 0 22 56 0 0 chr1 179948272 179948308 -62716045 + AT_rich Low_complexity Low_complexity 1 36 0 300 333 18 9 chr1 179949482 179949596 -62714757 + MIR3 SINE MIR 83 197 -11 409 279 178 4 chr1 179950137 179950384 -62713969 - MER113 DNA MER1_type? -112 409 120 183 333 45 0 chr1 179950583 179950649 -62713704 + MIR SINE MIR 86 154 -108 1278 151 46 0 chr1 179952150 179952409 -62711944 + L1MA7 LINE L1 6020 6290 -1 257 375 26 7 chr1 179953780 179953932 -62710421 + L2 LINE L2 2215 2369 -945 2307 93 0 3 chr1 179954789 179955099 -62709254 - AluSc SINE Alu 0 309 1 201 182 0 0 chr1 179956478 179956511 -62707842 + T-rich Low_complexity Low_complexity 1 33 0 267 222 0 48 chr1 179956597 179956660 -62707693 - 7SK RNA RNA -1 192 133 513 169 0 134 chr1 179956707 179956849 -62707504 - 7SK RNA RNA -68 125 3 23 0 0 0 chr1 179956923 179956946 -62707407 + AT_rich Low_complexity Low_complexity 1 23 0 445 350 15 10 chr1 179957072 179957275 -62707078 - L3 LINE CR1 -9 1568 1365 1729 183 12 21 chr1 179958443 179958816 -62705537 - MER47B DNA MER2_type 0 418 1 29 0 0 0 chr1 179960838 179960867 -62703486 + AT_rich Low_complexity Low_complexity 1 29 0 691 326 45 4 chr1 179961564 179961806 -62702547 - MIR SINE MIR -10 252 1 24 0 0 0 chr1 179962343 179962367 -62701986 + AT_rich Low_complexity Low_complexity 1 24 0 2160 72 0 10 chr1 179962463 179962753 -62701600 + AluY SINE Alu 1 287 -24 189 0 0 0 chr1 179962761 179962782 -62701571 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 220 329 118 49 chr1 179964517 179964763 -62699590 + L2 LINE L2 1867 2129 -1185 29 60 0 0 chr1 179965630 179965680 -62698673 + AT_rich Low_complexity Low_complexity 1 50 0 215 323 154 46 chr1 179965746 179966006 -62698347 + L2 LINE L2 2210 2497 -817 1135 244 60 36 chr1 179966015 179966351 -62698002 - MLT1A2 LTR MaLR 0 374 31 708 272 53 26 chr1 179966612 179966840 -62697513 + MIR SINE MIR 29 262 0 21 0 0 0 chr1 179967602 179967623 -62696730 + AT_rich Low_complexity Low_complexity 1 21 0 26 82 0 0 chr1 179968792 179968853 -62695500 + AT_rich Low_complexity Low_complexity 1 61 0 189 188 0 0 chr1 179969159 179969191 -62695162 + MIR SINE MIR 229 260 -2 287 317 109 72 chr1 179969593 179969940 -62694413 - L2 LINE L2 0 3313 2954 269 339 181 0 chr1 179970182 179970309 -62694044 + MER5A DNA MER1_type 10 159 -30 242 205 90 26 chr1 179970853 179970931 -62693422 - L2 LINE L2 -7 3265 3183 198 0 0 0 chr1 179973535 179973557 -62690796 + (CAA)n Simple_repeat Simple_repeat 3 24 0 198 195 0 0 chr1 179974042 179974083 -62690270 + MIR SINE MIR 187 227 -35 797 215 35 95 chr1 179974250 179974534 -62689819 + MLT1D LTR MaLR 1 267 -238 203 291 0 0 chr1 179975757 179975812 -62688541 + (TA)n Simple_repeat Simple_repeat 1 55 0 695 301 19 5 chr1 179975865 179976081 -62688272 + MIR SINE MIR 11 229 -33 204 40 0 0 chr1 179976577 179976602 -62687751 + (GA)n Simple_repeat Simple_repeat 1 25 0 318 348 59 15 chr1 179977608 179977743 -62686610 - MIR SINE MIR -97 165 25 189 247 49 37 chr1 179977756 179977837 -62686516 + L2 LINE L2 1729 1810 -1504 423 0 0 0 chr1 179977961 179978008 -62686345 + (CA)n Simple_repeat Simple_repeat 2 48 0 292 344 8 8 chr1 179978818 179978940 -62685413 + Tigger8 DNA MER2_type 10 131 -535 3118 199 63 14 chr1 179978982 179979694 -62684659 - L1MB5 LINE L1 -157 6017 5271 370 186 12 36 chr1 179981365 179981532 -62682821 + (TA)n Simple_repeat Simple_repeat 1 163 0 21 57 0 0 chr1 179981610 179981645 -62682708 + AT_rich Low_complexity Low_complexity 1 35 0 6735 107 32 14 chr1 179982366 179983405 -62680948 + MER11C LTR ERVK 1 1057 -14 1992 143 0 3 chr1 179984624 179984966 -62679387 + AluSx SINE Alu 1 341 0 469 344 28 21 chr1 179986476 179986758 -62677595 - HERVL LTR ERVL -797 2759 2476 332 286 32 14 chr1 179986852 179987028 -62677325 - HERVL LTR ERVL -2475 3010 2911 473 329 39 30 chr1 179987231 179987465 -62676888 - HERVL LTR ERVL -3629 2056 1821 228 156 22 0 chr1 179987651 179987696 -62676657 + (CCTTG)n Simple_repeat Simple_repeat 2 47 0 211 27 27 27 chr1 179990345 179990382 -62673971 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3019 249 26 43 chr1 179990510 179991228 -62673125 - L1 LINE L1 -772 5374 4678 671 218 0 0 chr1 179991228 179991361 -62672992 + FLAM_C SINE Alu 1 133 0 3019 249 26 43 chr1 179991361 179991677 -62672676 - L1 LINE L1 -1468 4678 4358 358 302 47 0 chr1 179991804 179991910 -62672443 - MIR3 SINE MIR 0 208 98 25 0 0 0 chr1 179992005 179992030 -62672323 + AT_rich Low_complexity Low_complexity 1 25 0 211 284 54 54 chr1 179992131 179992205 -62672148 - L2 LINE L2 -37 3235 3162 265 114 45 11 chr1 179992229 179992317 -62672036 + (TA)n Simple_repeat Simple_repeat 1 91 0 1018 98 0 0 chr1 179992317 179992449 -62671904 - AluSg/x SINE Alu -17 295 164 3247 185 24 50 chr1 179992550 179992866 -62671487 + L1MB2 LINE L1 5432 5755 -416 1979 179 71 15 chr1 179992866 179993275 -62671078 + MSTB1 LTR MaLR 1 432 0 3247 185 24 50 chr1 179993275 179993716 -62670637 + L1MB2 LINE L1 5755 6169 -2 714 212 88 48 chr1 179995171 179995421 -62668932 - MLT1C LTR MaLR -207 260 1 839 328 97 43 chr1 179995759 179995998 -62668355 + L1MEc LINE L1 1913 2138 -4077 2185 122 0 13 chr1 179995998 179996309 -62668044 + AluSc SINE Alu 1 307 -2 839 328 97 43 chr1 179996309 179997416 -62666937 + L1MEc LINE L1 2138 3286 -2929 401 237 79 68 chr1 179997416 179997682 -62666671 + L1MEc LINE L1 3732 4000 -2215 304 278 155 10 chr1 179997753 179997947 -62666406 + L1MEc LINE L1 4202 4423 -1792 1880 212 88 2 chr1 179997947 179998366 -62665987 - MLT1C LTR MaLR -12 455 1 2231 121 3 0 chr1 179998485 179998792 -62665561 + AluSx SINE Alu 5 312 0 4357 58 0 18 chr1 179999009 179999581 -62664772 + L1PA5 LINE L1 5593 6154 0 24 0 0 0 chr1 179999590 179999614 -62664739 + AT_rich Low_complexity Low_complexity 1 24 0 4414 162 21 5 chr1 179999995 180000808 -62663545 - L1MA4 LINE L1 -169 6131 5306 219 125 0 0 chr1 180000900 180000940 -62663413 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 11873 209 17 21 chr1 180000954 180003813 -62660540 - L1MA4 LINE L1 -847 5299 2459 1682 220 11 6 chr1 180003814 180004173 -62660180 + L1M3f LINE L1 5 365 -4963 902 270 82 28 chr1 180004177 180004825 -62659528 + L1MEc LINE L1 1005 1627 -4799 413 340 13 13 chr1 180005196 180005346 -62659007 - L2 LINE L2 -14 3299 3150 26 64 0 0 chr1 180009104 180009151 -62655202 + AT_rich Low_complexity Low_complexity 1 47 0 849 328 117 20 chr1 180009308 180009717 -62654636 - LTR16C LTR ERVL 0 491 43 3462 160 10 15 chr1 180010231 180011100 -62653253 - L1MA3 LINE L1 -461 7263 6399 12771 180 37 50 chr1 180011148 180015480 -62648873 - L1MA3 LINE L1 -1962 5603 1340 1047 332 21 16 chr1 180015482 180015862 -62648491 - LTR16C LTR ERVL -26 465 84 200 240 27 0 chr1 180016046 180016121 -62648232 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 35 0 0 chr1 180017108 180017137 -62647216 + AT_rich Low_complexity Low_complexity 1 29 0 1865 117 11 0 chr1 180017166 180017430 -62646923 - AluSc SINE Alu -9 300 34 1145 207 46 103 chr1 180017430 180017797 -62646556 - MSTD LTR MaLR -6 390 45 32 57 0 0 chr1 180018301 180018354 -62645999 + AT_rich Low_complexity Low_complexity 1 53 0 358 138 11 35 chr1 180018402 180018489 -62645864 + CT-rich Low_complexity Low_complexity 1 85 0 306 0 0 0 chr1 180018521 180018555 -62645798 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr1 180019124 180019147 -62645206 + AT_rich Low_complexity Low_complexity 1 23 0 2060 143 0 0 chr1 180019249 180019557 -62644796 - AluSx SINE Alu -4 308 1 333 147 0 40 chr1 180019566 180019641 -62644712 - L1MC2 LINE L1 -1 6343 6272 782 292 0 20 chr1 180019745 180019947 -62644406 - MER20 DNA MER1_type -20 199 2 346 295 76 35 chr1 180021005 180021138 -62643215 - L1M4c LINE L1 -4551 1833 1707 195 42 0 0 chr1 180021138 180021162 -62643191 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 346 295 76 35 chr1 180021162 180021316 -62643037 - L1M4c LINE L1 -4677 1707 1534 813 149 0 0 chr1 180021722 180021843 -62642510 + FLAM_C SINE Alu 1 121 -22 213 94 0 0 chr1 180021843 180021875 -62642478 + (TAA)n Simple_repeat Simple_repeat 2 33 0 205 303 151 46 chr1 180022607 180022759 -62641594 - MIR SINE MIR -65 197 30 363 199 27 14 chr1 180022791 180022937 -62641416 + GA-rich Low_complexity Low_complexity 3 150 0 1414 199 10 36 chr1 180024456 180024763 -62639590 + AluJb SINE Alu 1 299 -3 436 304 117 18 chr1 180025130 180025301 -62639052 - MIR SINE MIR -72 190 3 1039 35 0 42 chr1 180025400 180025542 -62638811 - AluY SINE Alu -1 310 175 986 49 0 49 chr1 180025910 180026052 -62638301 - AluY SINE Alu -2 309 175 279 0 0 0 chr1 180026665 180026696 -62637657 + (CA)n Simple_repeat Simple_repeat 1 31 0 212 337 50 80 chr1 180027168 180027468 -62636885 - L2 LINE L2 -1135 2179 1889 2356 195 48 17 chr1 180028357 180028936 -62635417 - L1MC3 LINE L1 0 7785 7189 1356 173 4 29 chr1 180028948 180029220 -62635133 - MER2 DNA MER2_type 0 345 81 34 42 0 0 chr1 180029242 180029290 -62635063 + AT_rich Low_complexity Low_complexity 1 48 0 525 222 106 141 chr1 180029318 180029517 -62634836 - MLT1C LTR MaLR -7 498 290 24 0 0 0 chr1 180029869 180029893 -62634460 + AT_rich Low_complexity Low_complexity 1 24 0 552 250 130 21 chr1 180030399 180030591 -62633762 + MLT1D LTR MaLR 293 505 0 451 137 23 15 chr1 180030602 180030733 -62633620 + (TA)n Simple_repeat Simple_repeat 2 133 0 30 69 0 0 chr1 180031698 180031756 -62632597 + AT_rich Low_complexity Low_complexity 1 58 0 337 278 144 0 chr1 180031801 180031981 -62632372 + L1M4 LINE L1 2703 2908 -3238 331 217 130 0 chr1 180032980 180033072 -62631281 - L1MC3 LINE L1 -3 7782 7679 8049 238 32 25 chr1 180033188 180035809 -62628544 - L1MC3 LINE L1 -380 7405 4762 * 8918 200 17 6 chr1 180035792 180038050 -62626303 - L1P5 LINE L1 -563 5588 3305 5910 80 9 68 chr1 180038050 180038928 -62625425 - LTR12 LTR ERV1 0 826 1 6478 98 2 2 chr1 180038928 180039822 -62624531 - HERV9 LTR ERV1 0 8399 7506 676 100 16 198 chr1 180039827 180040196 -62624157 - Harlequin LTR ERV1 -5755 1141 840 * 6277 88 13 11 chr1 180040163 180041056 -62623297 - Harlequin LTR ERV1 -3425 4974 4080 14507 107 7 12 chr1 180041063 180043942 -62620411 - Harlequin LTR ERV1 -5260 3139 190 3349 149 40 1 chr1 180044042 180045100 -62619253 - L1PBa LINE L1 -3397 3465 2368 1218 244 145 23 chr1 180045310 180045823 -62618530 + MLT1E1 LTR MaLR 1 546 -80 362 211 0 0 chr1 180046005 180046081 -62618272 + MLT1E1 LTR MaLR 518 593 0 2087 139 0 0 chr1 180046139 180046441 -62617912 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 180046716 180046737 -62617616 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 180047310 180047342 -62617011 + AT_rich Low_complexity Low_complexity 1 32 0 348 307 85 67 chr1 180047434 180047791 -62616562 + MLT1J2 LTR MaLR 29 390 -19 226 250 10 10 chr1 180049433 180049533 -62614820 + L1MC4 LINE L1 6997 7096 -946 * 350 242 0 11 chr1 180049515 180049606 -62614747 + L1MC4a LINE L1 7147 7236 -572 489 82 24 12 chr1 180049669 180049754 -62614599 + (GAGAA)n Simple_repeat Simple_repeat 5 90 0 1188 288 106 12 chr1 180049763 180050402 -62613951 + L1ME LINE L1 138 836 -5234 228 304 13 0 chr1 180050405 180050484 -62613869 - L1MEc LINE L1 -4730 1666 1587 700 284 134 23 chr1 180050494 180050923 -62613430 + MLT1D LTR MaLR 10 467 0 565 261 37 28 chr1 180050925 180051143 -62613210 + MLT1D-int LTR MaLR 4 223 -1148 1086 224 31 0 chr1 180051151 180051379 -62612974 + MLT1A1 LTR MaLR 130 364 -1 237 83 0 0 chr1 180051402 180051438 -62612915 + (TG)n Simple_repeat Simple_repeat 1 36 0 358 291 102 0 chr1 180051479 180051606 -62612747 + L2 LINE L2 3173 3312 -1 210 333 113 7 chr1 180052176 180052326 -62612027 - MIR SINE MIR -85 177 12 1755 167 7 0 chr1 180052928 180053216 -62611137 + AluSx SINE Alu 1 290 -22 243 394 21 38 chr1 180054800 180055036 -62609317 + L2 LINE L2 2828 3059 -213 439 336 65 9 chr1 180055119 180055333 -62609020 + MLT1I LTR MaLR 182 407 -2 285 75 0 0 chr1 180055538 180055578 -62608775 + (GA)n Simple_repeat Simple_repeat 2 41 0 1144 194 13 63 chr1 180055637 180055936 -62608417 + L1MC3 LINE L1 7481 7764 -21 23 0 0 0 chr1 180056022 180056045 -62608308 + AT_rich Low_complexity Low_complexity 1 23 0 32 86 0 0 chr1 180056157 180056238 -62608115 + AT_rich Low_complexity Low_complexity 1 81 0 21 57 0 0 chr1 180056867 180056902 -62607451 + AT_rich Low_complexity Low_complexity 1 35 0 8141 201 20 39 chr1 180057742 180059777 -62604576 + L1PB4 LINE L1 3288 5284 -862 282 217 14 0 chr1 180059799 180059868 -62604485 - LTR43 LTR ERV1 -20 582 513 923 202 60 32 chr1 180059977 180060225 -62604128 - LTR43 LTR ERV1 -137 465 211 4226 163 15 27 chr1 180060610 180061030 -62603323 + L1PB4 LINE L1 5358 5765 -391 1619 176 29 13 chr1 180061030 180061161 -62603192 + AluJb SINE Alu 1 128 -184 661 29 80 0 chr1 180061161 180061298 -62603055 + (TA)n Simple_repeat Simple_repeat 2 149 0 1619 176 29 13 chr1 180061298 180061473 -62602880 + AluJb SINE Alu 128 312 0 4226 163 15 27 chr1 180061473 180061861 -62602492 + L1PB4 LINE L1 5765 6156 0 401 280 75 35 chr1 180062005 180062205 -62602148 + L2 LINE L2 3106 3313 0 358 341 149 22 chr1 180062207 180062530 -62601823 + L2 LINE L2 1864 2227 -1087 21 0 0 0 chr1 180062554 180062575 -62601778 + AT_rich Low_complexity Low_complexity 1 21 0 530 266 19 0 chr1 180062711 180062869 -62601484 - L1PBa LINE L1 -6697 166 6 205 294 0 71 chr1 180062892 180062977 -62601376 - MER5A DNA MER1_type -110 79 1 1204 236 46 18 chr1 180063655 180063982 -62600371 - MLT1A1 LTR MaLR -11 354 19 11595 94 26 10 chr1 180064494 180066127 -62598226 - Charlie3 DNA MER1_type -4 2706 1048 973 329 0 43 chr1 180066138 180066460 -62597893 + L1M4b LINE L1 218 525 -6334 6226 123 70 20 chr1 180066495 180067481 -62596872 - Charlie3 DNA MER1_type -1670 1040 6 22 35 0 0 chr1 180067632 180067661 -62596692 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr1 180067843 180067896 -62596457 + AT_rich Low_complexity Low_complexity 1 53 0 24 67 0 0 chr1 180067916 180067961 -62596392 + AT_rich Low_complexity Low_complexity 1 45 0 2407 273 98 43 chr1 180068290 180069147 -62595206 + L1M4b LINE L1 40 943 -5916 308 311 60 25 chr1 180069221 180069456 -62594897 + L1M4b LINE L1 2584 2826 -4312 263 111 42 14 chr1 180069457 180069529 -62594824 + (TA)n Simple_repeat Simple_repeat 1 74 0 26 50 0 0 chr1 180069657 180069697 -62594656 + AT_rich Low_complexity Low_complexity 1 40 0 21 95 0 0 chr1 180069790 180069853 -62594500 + AT_rich Low_complexity Low_complexity 1 63 0 57 85 0 0 chr1 180070047 180070188 -62594165 + AT_rich Low_complexity Low_complexity 1 141 0 193 65 0 65 chr1 180070188 180070234 -62594119 + (TTTAA)n Simple_repeat Simple_repeat 1 43 0 28 95 0 0 chr1 180070244 180070328 -62594025 + AT_rich Low_complexity Low_complexity 1 84 0 22 80 0 0 chr1 180070489 180070539 -62593814 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr1 180070941 180070966 -62593387 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chr1 180071018 180071054 -62593299 + AT_rich Low_complexity Low_complexity 1 36 0 210 355 16 0 chr1 180071733 180071795 -62592558 - MIR3 SINE MIR -133 75 13 23 0 0 0 chr1 180072175 180072198 -62592155 + AT_rich Low_complexity Low_complexity 1 23 0 212 184 0 0 chr1 180072233 180072271 -62592082 - L2 LINE L2 -4 3309 3272 1185 223 81 18 chr1 180073017 180073300 -62591053 - AluJb SINE Alu -1 301 1 26 64 0 0 chr1 180073326 180073373 -62590980 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr1 180075336 180075364 -62588989 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 180075485 180075514 -62588839 + AT_rich Low_complexity Low_complexity 1 29 0 6019 92 5 5 chr1 180075514 180076361 -62587992 - L1PA8 LINE L1 0 6172 5326 2537 121 0 0 chr1 180076655 180077018 -62587335 - THE1B LTR MaLR -1 363 1 2926 219 74 9 chr1 180077655 180078304 -62586049 - MER21B LTR ERV1 -1 862 172 2351 166 22 9 chr1 180078304 180078751 -62585602 + L1MA6 LINE L1 5848 6300 0 922 242 154 0 chr1 180078751 180079036 -62585317 + L1M4 LINE L1 4700 5028 -1118 913 171 53 0 chr1 180079039 180079191 -62585162 - MER21B LTR ERV1 -703 160 1 423 170 10 30 chr1 180079403 180079503 -62584850 + L1MA6 LINE L1 6203 6300 0 997 228 154 0 chr1 180079503 180079788 -62584565 + L1 LINE L1 4700 5028 -1118 853 191 53 0 chr1 180079791 180079943 -62584410 - MER21B LTR ERV1 -703 160 1 288 102 0 0 chr1 180080821 180080870 -62583483 + (CA)n Simple_repeat Simple_repeat 2 50 0 210 150 0 0 chr1 180080870 180080910 -62583443 + (GA)n Simple_repeat Simple_repeat 1 40 0 26 50 0 0 chr1 180081944 180081984 -62582369 + AT_rich Low_complexity Low_complexity 1 40 0 932 331 92 19 chr1 180082053 180082832 -62581521 + L2 LINE L2 2476 3309 -4 390 305 30 0 chr1 180082845 180082976 -62581377 + MLT1L LTR MaLR 140 274 -341 229 318 59 0 chr1 180083172 180083257 -62581096 + MLT1K LTR MaLR 481 570 -18 186 48 24 48 chr1 180083288 180083330 -62581023 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 3715 86 4 30 chr1 180083332 180083891 -62580462 - L1PA13 LINE L1 -18 6145 5602 577 306 68 48 chr1 180083985 180084295 -62580058 + MLT1H LTR MaLR 204 519 -30 2537 118 8 0 chr1 180085857 180086221 -62578132 - THE1C LTR MaLR -8 367 1 9798 132 31 3 chr1 180086221 180087758 -62576595 - THE1C-int LTR MaLR 0 1580 1 2002 134 73 22 chr1 180087758 180088115 -62576238 - THE1C LTR MaLR 0 375 1 12503 166 62 22 chr1 180089251 180091799 -62572554 + L1M1 LINE L1 16 3434 -4131 278 50 25 0 chr1 180091799 180091839 -62572514 + (CA)n Simple_repeat Simple_repeat 2 42 0 12503 166 62 22 chr1 180091839 180091920 -62572433 + L1M1 LINE L1 3434 3510 -4055 21 0 0 0 chr1 180093858 180093879 -62570474 + AT_rich Low_complexity Low_complexity 1 21 0 1400 239 149 8 chr1 180094838 180095332 -62569021 - MLT1E1 LTR MaLR 0 654 72 742 155 30 40 chr1 180095429 180095604 -62568749 + MER6 DNA MER2_type -39 865 0 281 205 128 34 chr1 180095604 180095713 -62568640 - MER53 DNA DNA -69 120 1 303 326 107 6 chr1 180096695 180096873 -62567480 + L1MEc LINE L1 50 245 -6151 2061 109 10 10 chr1 180148001 180148304 -62516049 + AluSg SINE Alu 1 303 -7 276 212 51 102 chr1 180148310 180148428 -62515925 - MER63 DNA MER1_type -311 751 14 513 291 155 41 chr1 180148545 180148913 -62515440 - L1MEc LINE L1 -4260 2136 1727 494 230 62 37 chr1 180148936 180149097 -62515256 - MER58B DNA MER1_type -1 340 176 459 293 75 86 chr1 180149127 180149499 -62514854 - L1MEc LINE L1 -5400 996 629 1246 225 48 18 chr1 180151662 180151995 -62512358 + MER2 DNA MER2_type 2 344 0 2112 150 39 66 chr1 180152023 180152463 -62511890 + MSTA LTR MaLR 1 428 0 4519 236 114 44 chr1 180152479 180152689 -62511664 + L1M4b LINE L1 10 204 -6651 1670 167 43 35 chr1 180152689 180153061 -62511292 - THE1C LTR MaLR 0 375 1 4519 236 114 44 chr1 180153061 180154751 -62509602 + L1M4b LINE L1 204 2024 -4831 1746 123 16 4 chr1 180154774 180155161 -62509192 - LTR23 LTR ERV1 -11 426 1 292 370 0 24 chr1 180156264 180156391 -62507962 - MIR SINE MIR -65 143 20 5081 68 26 19 chr1 180156888 180157206 -62507147 - L1PA7 LINE L1 -2 6152 5838 2787 3 0 0 chr1 180157206 180157510 -62506843 - AluYa5 SINE Alu -7 304 1 5081 68 26 19 chr1 180157510 180157892 -62506461 - L1PA7 LINE L1 -316 5838 5447 1925 230 110 15 chr1 180158159 180158661 -62505692 + MER101B LTR ERV1 1 444 -30 38 0 0 0 chr1 180158772 180158810 -62505543 + AT_rich Low_complexity Low_complexity 1 38 0 339 121 0 0 chr1 180158823 180158881 -62505472 + (TA)n Simple_repeat Simple_repeat 1 58 0 1908 150 13 53 chr1 180158886 180159265 -62505088 - Tigger2a DNA MER2_type -70 364 1 240 354 31 0 chr1 180159585 180159681 -62504672 + MIR SINE MIR 53 151 -111 21 0 0 0 chr1 180159880 180159901 -62504452 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 180160370 180160394 -62503959 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr1 180160513 180160538 -62503815 + AT_rich Low_complexity Low_complexity 1 25 0 775 256 12 0 chr1 180161586 180161754 -62502599 - FAM SINE Alu -5 170 1 21 0 0 0 chr1 180165998 180166019 -62498334 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 180167652 180167673 -62496680 + AT_rich Low_complexity Low_complexity 1 21 0 537 332 24 48 chr1 180167770 180168146 -62496207 + HAL1b LINE L1 186 552 -796 21 0 0 0 chr1 180168458 180168479 -62495874 + AT_rich Low_complexity Low_complexity 1 21 0 232 188 29 0 chr1 180168667 180168736 -62495617 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 214 188 29 58 chr1 180169024 180169093 -62495260 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 1393 168 4 17 chr1 180169094 180169326 -62495027 - AluJb SINE Alu -16 296 68 504 185 22 0 chr1 180169352 180169444 -62494909 - AluJ/FLAM SINE Alu -216 96 3 1318 237 76 35 chr1 180170595 180171029 -62493324 - LTR45B LTR ERV1 -4 485 34 32 43 0 0 chr1 180171579 180171625 -62492728 + AT_rich Low_complexity Low_complexity 1 46 0 1815 170 106 23 chr1 180171630 180172025 -62492328 - MSTA LTR MaLR 0 428 1 392 242 20 0 chr1 180172362 180172461 -62491892 + LTR43 LTR ERV1 176 276 -326 291 285 16 16 chr1 180172595 180172718 -62491635 + LTR43 LTR ERV1 199 321 -281 2466 161 21 7 chr1 180172903 180173325 -62491028 + MSTA LTR MaLR 1 428 0 8252 187 37 9 chr1 180173325 180174931 -62489422 + MSTA-int LTR MaLR 1 1651 0 1735 383 0 0 chr1 180174931 180175359 -62488994 + MSTA LTR MaLR 1 428 0 1076 220 16 90 chr1 180175395 180175827 -62488526 - L1MC3 LINE L1 -1465 6320 5921 3394 238 150 36 chr1 180175839 180176824 -62487529 + MER52A LTR ERV1 1 1097 -658 226 309 87 24 chr1 180176861 180176987 -62487366 + LTR28 LTR ERV1 848 981 -39 * 597 274 0 50 chr1 180176955 180177134 -62487219 + LTR28 LTR ERV1 851 1020 0 27 49 0 0 chr1 180177495 180177536 -62486817 + AT_rich Low_complexity Low_complexity 1 41 0 339 350 6 49 chr1 180177836 180177999 -62486354 - L2 LINE L2 -428 2886 2731 24 0 0 0 chr1 180178277 180178301 -62486052 + AT_rich Low_complexity Low_complexity 1 24 0 677 202 0 16 chr1 180178311 180178435 -62485918 - FLAM_A SINE Alu -11 122 1 3550 15 0 0 chr1 180179018 180179511 -62484842 - L1PA2 LINE L1 -492 5663 5171 4173 22 0 0 chr1 180179511 180179994 -62484359 + L1PA2 LINE L1 5668 6155 0 1600 192 4 0 chr1 180180000 180180276 -62484077 - AluJb SINE Alu -31 281 5 2484 136 45 9 chr1 180180881 180181300 -62483053 - MER57B LTR ERV1 0 434 1 408 305 99 25 chr1 180181560 180181842 -62482511 - L1M4 LINE L1 -3622 2524 2222 28 29 0 0 chr1 180183415 180183450 -62480903 + AT_rich Low_complexity Low_complexity 1 35 0 407 260 31 55 chr1 180183799 180183926 -62480427 + L2 LINE L2 3190 3313 0 27 29 0 0 chr1 180184470 180184504 -62479849 + AT_rich Low_complexity Low_complexity 1 34 0 180 111 0 0 chr1 180184892 180184919 -62479434 + (TA)n Simple_repeat Simple_repeat 1 27 0 31 44 0 0 chr1 180185118 180185163 -62479190 + AT_rich Low_complexity Low_complexity 1 45 0 448 246 18 9 chr1 180185822 180185932 -62478421 + MLT1A1 LTR MaLR 1 111 -254 1303 269 67 26 chr1 180185979 180186473 -62477880 + LTR38 LTR ERV1 43 556 0 1226 203 59 4 chr1 180186479 180186716 -62477637 + MLT1A1 LTR MaLR 116 365 0 523 169 17 17 chr1 180187586 180187704 -62476649 + L1MCa LINE L1 962 1079 -5347 1305 210 91 19 chr1 180187712 180188084 -62476269 + L1MC3 LINE L1 6702 7100 -685 257 293 61 0 chr1 180188085 180188167 -62476186 + MLT1F1 LTR MaLR 39 125 -442 773 208 0 2 chr1 180188167 180188321 -62476032 + L1MC3 LINE L1 7202 7344 -441 1089 216 45 4 chr1 180188323 180188592 -62475761 + L1MC3 LINE L1 7494 7773 -12 239 196 141 0 chr1 180188599 180188691 -62475662 + Charlie5 DNA MER1_type 2426 2530 -82 1553 221 52 3 chr1 180189468 180189816 -62474537 - MLT1A1 LTR MaLR 0 365 1 4567 156 28 44 chr1 180190471 180190780 -62473573 + L1PA15 LINE L1 5056 5369 -796 1838 160 0 0 chr1 180190780 180191062 -62473291 + AluSx SINE Alu 1 282 -30 4567 156 28 44 chr1 180191062 180191880 -62472473 + L1PA15 LINE L1 5369 6165 0 1528 202 52 6 chr1 180191888 180192234 -62472119 + L1MA6 LINE L1 5935 6296 -4 21 0 0 0 chr1 180192293 180192314 -62472039 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr1 180192511 180192546 -62471807 + AT_rich Low_complexity Low_complexity 1 35 0 2476 48 0 0 chr1 180192546 180192835 -62471518 - AluY SINE Alu -22 289 1 2207 229 24 7 chr1 180192987 180193583 -62470770 - L1MC2 LINE L1 -60 7701 6133 471 313 126 14 chr1 180194043 180194401 -62469952 + MER90 LTR ERV1 178 575 0 1007 138 22 28 chr1 180194427 180194608 -62469745 - L1PB2 LINE L1 -2 6149 5970 735 265 110 40 chr1 180194953 180195398 -62468955 + L1ME1 LINE L1 3685 4160 -1986 1059 203 0 40 chr1 180195437 180195659 -62468694 + AluJb SINE Alu 1 213 -99 293 267 33 0 chr1 180195677 180195767 -62468586 + L1ME1 LINE L1 4758 4850 -1296 407 156 33 0 chr1 180195788 180195910 -62468443 + (TA)n Simple_repeat Simple_repeat 1 126 0 526 280 93 20 chr1 180195923 180196319 -62468034 + L1ME1 LINE L1 4876 5300 -846 2519 227 35 0 chr1 180196322 180196837 -62467516 + L1MA5 LINE L1 2 534 -6634 12219 188 31 19 chr1 180196961 180199939 -62464414 + L1MA5 LINE L1 3504 6541 -780 455 0 18 0 chr1 180199939 180199994 -62464359 + (CA)n Simple_repeat Simple_repeat 2 57 0 12219 188 31 19 chr1 180199994 180200783 -62463570 + L1MA5 LINE L1 6541 7319 -2 1930 307 63 5 chr1 180200819 180201585 -62462768 + L1ME1 LINE L1 5301 6110 -56 316 316 115 17 chr1 180201983 180202157 -62462196 + L1MEc LINE L1 799 989 -5407 359 319 79 12 chr1 180202301 180202542 -62461811 + L1M4 LINE L1 3385 3641 -2505 282 219 146 24 chr1 180202592 180202715 -62461638 + L1ME3A LINE L1 6033 6170 0 22 35 0 0 chr1 180202897 180202926 -62461427 + AT_rich Low_complexity Low_complexity 1 29 0 1683 173 51 6 chr1 180204528 180204841 -62459512 + MER7A DNA MER2_type 2 326 -20 25 65 0 0 chr1 180205273 180205319 -62459034 + AT_rich Low_complexity Low_complexity 1 46 0 288 231 0 0 chr1 180206093 180206145 -62458208 + MLT2E LTR ERVL 6 57 -571 21 89 0 0 chr1 180206202 180206258 -62458095 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr1 180206380 180206400 -62457953 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr1 180207348 180207377 -62456976 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr1 180207667 180207711 -62456642 + AT_rich Low_complexity Low_complexity 1 44 0 346 374 12 18 chr1 180209159 180209325 -62455028 - MLT1J LTR MaLR -226 285 121 29 0 0 0 chr1 180209663 180209692 -62454661 + AT_rich Low_complexity Low_complexity 1 29 0 321 26 0 0 chr1 180210987 180211025 -62453328 + (TG)n Simple_repeat Simple_repeat 1 38 0 555 243 118 0 chr1 180211090 180211234 -62453119 + MER3 DNA MER1_type 47 207 -2 216 182 0 0 chr1 180211606 180211650 -62452703 + (TA)n Simple_repeat Simple_repeat 2 45 0 834 259 83 29 chr1 180214244 180214557 -62449796 - L1ME3A LINE L1 -34 6136 5807 23 0 0 0 chr1 180214589 180214612 -62449741 + AT_rich Low_complexity Low_complexity 1 23 0 261 163 0 0 chr1 180214848 180214897 -62449456 + CT-rich Low_complexity Low_complexity 3 51 0 1006 261 40 55 chr1 180215256 180215654 -62448699 - LTR52 LTR ERVL -21 400 9 1993 96 0 68 chr1 180216161 180216485 -62447868 - AluY SINE Alu -7 304 3 734 195 6 26 chr1 180216819 180217152 -62447201 + CT-rich Low_complexity Low_complexity 1 326 0 1947 109 0 24 chr1 180217253 180217546 -62446807 - AluSg SINE Alu -24 286 1 781 329 107 29 chr1 180218823 180219112 -62445241 - L1ME3 LINE L1 -215 5930 5665 2185 113 0 0 chr1 180219112 180219405 -62444948 - AluSc SINE Alu -14 295 3 781 329 107 29 chr1 180219405 180220433 -62443920 - L1ME3 LINE L1 -480 5665 4514 342 255 20 13 chr1 180221043 180221192 -62443161 + (TA)n Simple_repeat Simple_repeat 1 150 0 276 136 34 0 chr1 180221304 180221392 -62442961 + (TA)n Simple_repeat Simple_repeat 1 91 0 549 306 68 47 chr1 180221562 180221818 -62442535 - L1ME3 LINE L1 -4922 1197 927 363 44 0 0 chr1 180221818 180221863 -62442490 + (TG)n Simple_repeat Simple_repeat 2 46 0 549 306 68 47 chr1 180221863 180222031 -62442322 - L1ME3 LINE L1 -5192 927 764 180 355 0 13 chr1 180222383 180222459 -62441894 - L2 LINE L2 -4 3309 3235 1205 158 14 47 chr1 180222498 180222777 -62441576 + L1MA9 LINE L1 6033 6302 -10 1754 232 57 21 chr1 180224912 180225386 -62438967 - MLT1D LTR MaLR 0 505 15 28 0 0 0 chr1 180225629 180225657 -62438696 + AT_rich Low_complexity Low_complexity 1 28 0 264 340 10 10 chr1 180225661 180225764 -62438589 - L2 LINE L2 -298 2974 2872 379 211 68 74 chr1 180225767 180225957 -62438396 - MER53 DNA DNA 0 189 1 393 346 37 37 chr1 180226015 180226258 -62438095 - L2 LINE L2 -494 2820 2578 25 0 0 0 chr1 180226761 180226786 -62437567 + AT_rich Low_complexity Low_complexity 1 25 0 39 22 0 0 chr1 180227316 180227362 -62436991 + AT_rich Low_complexity Low_complexity 1 46 0 1671 180 3 25 chr1 180227524 180227840 -62436513 + AluJo SINE Alu 4 312 0 28 48 0 0 chr1 180228258 180228300 -62436053 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 180228490 180228515 -62435838 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr1 180228668 180228699 -62435654 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr1 180228737 180228769 -62435584 + AT_rich Low_complexity Low_complexity 1 32 0 241 178 192 14 chr1 180229165 180229238 -62435115 - MIR SINE MIR -73 189 104 2039 162 12 3 chr1 180231053 180231387 -62432966 - MER1B DNA MER1_type -2 337 1 340 68 0 17 chr1 180231827 180231886 -62432467 + L1MA3 LINE L1 6248 6305 0 25 31 0 0 chr1 180231891 180231923 -62432430 + AT_rich Low_complexity Low_complexity 1 32 0 288 303 22 0 chr1 180232664 180232753 -62431600 - MLT1I LTR MaLR -211 198 108 1786 251 99 62 chr1 180232760 180232857 -62431496 + L1MCa LINE L1 5 97 -5948 2521 47 0 0 chr1 180232857 180233156 -62431197 - AluY SINE Alu -12 299 1 1786 251 99 62 chr1 180233156 180233958 -62430395 + L1MCa LINE L1 97 913 -5132 288 206 39 15 chr1 180236111 180236319 -62428034 + (TA)n Simple_repeat Simple_repeat 1 213 0 402 139 14 14 chr1 180236390 180236462 -62427891 - L1MC/D LINE L1 -723 5610 5539 1209 216 33 0 chr1 180236462 180236703 -62427650 - L1MC/D LINE L1 -696 5648 5400 249 226 39 10 chr1 180236814 180236916 -62427437 + (TATAA)n Simple_repeat Simple_repeat 2 106 0 270 306 221 25 chr1 180236998 180237197 -62427156 - L2 LINE L2 -729 2585 2348 1986 137 7 3 chr1 180237203 180237510 -62426843 + AluSx SINE Alu 1 308 -4 269 308 145 36 chr1 180237983 180238259 -62426094 - L2 LINE L2 -598 2716 2411 1379 229 68 45 chr1 180238523 180238983 -62425370 + MLT2B1 LTR ERVL 1 462 -2 668 150 6 29 chr1 180239907 180240080 -62424273 + CT-rich Low_complexity Low_complexity 1 169 0 276 100 0 0 chr1 180240104 180240144 -62424209 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 226 306 45 45 chr1 180241517 180241651 -62422702 + MLT1K LTR MaLR 394 527 -61 2546 43 0 0 chr1 180241946 180242245 -62422108 + AluY SINE Alu 1 299 -12 28 0 0 0 chr1 180243030 180243058 -62421295 + AT_rich Low_complexity Low_complexity 1 28 0 2067 102 3 0 chr1 180243261 180243574 -62420779 - AluSx SINE Alu 0 314 1 475 274 33 82 chr1 180243597 180243867 -62420486 - MER110 LTR ERV1 -64 427 171 535 266 18 35 chr1 180244046 180244215 -62420138 - MIR SINE MIR -23 239 74 226 191 21 0 chr1 180244541 180244588 -62419765 + (TA)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr1 180245175 180245200 -62419153 + AT_rich Low_complexity Low_complexity 1 25 0 187 338 26 0 chr1 180246146 180246223 -62418130 - L2 LINE L2 -908 2406 2328 34 89 0 0 chr1 180246873 180246963 -62417390 + AT_rich Low_complexity Low_complexity 1 90 0 206 62 31 0 chr1 180248097 180248129 -62416224 + (TTA)n Simple_repeat Simple_repeat 1 33 0 299 335 50 53 chr1 180248879 180249255 -62415098 + MER110-int LTR ERV1 2609 2983 -1664 708 296 89 24 chr1 180251071 180251453 -62412900 + MER92A LTR ERV1 4 410 -2 629 313 61 61 chr1 180251455 180251800 -62412553 - MER45R DNA AcHobo -1013 568 224 940 249 0 10 chr1 180251873 180252074 -62412279 - MER45R DNA AcHobo -1381 200 2 285 321 97 25 chr1 180252557 180252794 -62411559 + MLT1I LTR MaLR 107 360 -49 1656 171 0 17 chr1 180253523 180253821 -62410532 + AluJo SINE Alu 1 293 -19 22 35 0 0 chr1 180254070 180254099 -62410254 + AT_rich Low_complexity Low_complexity 1 29 0 8369 118 25 14 chr1 180254124 180255387 -62408966 - HSMAR1 DNA Mariner 0 1287 10 257 311 174 19 chr1 180255752 180255913 -62408440 - MIR SINE MIR -4 258 73 28 0 0 0 chr1 180257323 180257351 -62407002 + AT_rich Low_complexity Low_complexity 1 28 0 1131 249 50 0 chr1 180257357 180257638 -62406715 - AluJo SINE Alu -6 296 2 474 231 70 0 chr1 180258059 180258202 -62406151 + MER103 DNA DNA 12 164 -2 5991 167 63 9 chr1 180260490 180261645 -62402708 - Tigger3b DNA MER2_type 0 1231 14 22 88 0 0 chr1 180262152 180262209 -62402144 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr1 180262499 180262520 -62401833 + AT_rich Low_complexity Low_complexity 1 21 0 1845 193 19 16 chr1 180262938 180263301 -62401052 + MLT1A1 LTR MaLR 1 364 -1 1029 108 0 0 chr1 180263664 180263812 -62400541 + AluSp/q SINE Alu 163 310 -3 425 299 57 37 chr1 180263990 180264576 -62399777 + L1ME LINE L1 4901 5500 -670 4166 250 27 50 chr1 180264759 180265921 -62398432 - L1M2 LINE L1 -4873 1976 842 1733 151 3 35 chr1 180266021 180266332 -62398021 - AluSq SINE Alu -12 301 1 234 294 6 12 chr1 180266450 180266613 -62397740 + (TA)n Simple_repeat Simple_repeat 1 162 0 375 280 10 0 chr1 180266617 180266717 -62397636 - MLT1A1 LTR MaLR -20 345 245 435 290 62 18 chr1 180266762 180267038 -62397315 - L1M4 LINE L1 -953 5895 5608 267 245 122 10 chr1 180267169 180267267 -62397086 - MER51D LTR ERV1 -86 571 463 2448 32 0 0 chr1 180267933 180268274 -62396079 - AluY SINE Alu 0 341 1 414 229 9 5 chr1 180269134 180269247 -62395106 - L1MA4A LINE L1 -1 6278 6041 241 180 20 0 chr1 180269236 180269286 -62395067 - L1MA4A LINE L1 -179 6124 6074 * 3403 245 73 7 chr1 180269753 180271587 -62392766 - L1M4 LINE L1 -2826 4022 2067 22 94 0 0 chr1 180271697 180271761 -62392592 + AT_rich Low_complexity Low_complexity 1 64 0 24 85 0 0 chr1 180271943 180272002 -62392351 + AT_rich Low_complexity Low_complexity 1 59 0 3342 100 4 10 chr1 180272537 180273035 -62391318 - L1PA13 LINE L1 -1 6162 5668 41 0 0 0 chr1 180273348 180273389 -62390964 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr1 180273724 180273746 -62390607 + AT_rich Low_complexity Low_complexity 1 22 0 455 208 38 0 chr1 180274612 180274718 -62389635 + L1M4 LINE L1 5167 5276 -870 * 3397 178 35 30 chr1 180274703 180275702 -62388651 + L1MA8 LINE L1 4991 5990 -301 3687 228 72 54 chr1 180275826 180277782 -62386571 - L1MA9 LINE L1 0 6312 4318 1089 150 116 24 chr1 180277791 180277998 -62386355 + AluSx SINE Alu 11 236 -76 401 101 43 29 chr1 180278021 180278090 -62386263 + polypurine Low_complexity Low_complexity 4 73 0 851 96 34 28 chr1 180278091 180278268 -62386085 + GA-rich Low_complexity Low_complexity 1 178 0 3404 186 17 27 chr1 180278268 180278447 -62385906 - L1MA9 LINE L1 -1814 4332 4153 2314 103 0 0 chr1 180278447 180278748 -62385605 - AluSx SINE Alu -11 301 1 3404 186 17 27 chr1 180278748 180279315 -62385038 - L1MA9 LINE L1 -1993 4153 3593 216 0 0 0 chr1 180279323 180279347 -62385006 + (T)n Simple_repeat Simple_repeat 1 24 0 279 205 320 0 chr1 180279369 180279491 -62384862 - L1MA9 LINE L1 -2555 3591 3431 686 104 17 9 chr1 180279637 180279752 -62384601 - MLT2B3 LTR ERVL -436 118 3 1561 161 77 3 chr1 180279824 180280109 -62384244 - AluJo SINE Alu -1 311 6 2456 53 0 3 chr1 180280979 180281281 -62383072 - AluY SINE Alu -10 301 1 576 316 87 81 chr1 180281656 180282985 -62381368 - HERV17 LTR ERV1 -2325 4766 3431 921 246 37 79 chr1 180284813 180285191 -62379162 + MLT1A1 LTR MaLR 1 362 -3 1210 264 33 28 chr1 180287171 180287534 -62376819 + MLT1A1 LTR MaLR 1 365 0 261 57 0 0 chr1 180288369 180288404 -62375949 + (TG)n Simple_repeat Simple_repeat 2 36 0 217 113 38 38 chr1 180289064 180289144 -62375209 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1319 135 5 0 chr1 180289177 180289392 -62374961 - L1MA3 LINE L1 0 6305 6090 4038 177 27 29 chr1 180290044 180291235 -62373118 + L1MA4A LINE L1 4881 6073 -230 2212 307 33 33 chr1 180291892 180292752 -62371601 - MST-int LTR MaLR -189 1462 603 540 236 23 65 chr1 180292748 180292964 -62371389 - L1PB3 LINE L1 0 6154 5950 * 2189 262 21 18 chr1 180292966 180293618 -62370735 - MSTC-int LTR MaLR -1080 655 2 1061 216 0 5 chr1 180293620 180293819 -62370534 - MSTC LTR MaLR 0 428 231 315 145 53 13 chr1 180293933 180294009 -62370344 + MLT-int LTR MaLR 33 111 -1624 1030 211 66 12 chr1 180294040 180294342 -62370011 - LTR27 LTR ERV1 -8 493 195 1311 276 23 0 chr1 180294342 180294690 -62369663 - L1M4 LINE L1 -2024 4122 3767 222 37 0 0 chr1 180295043 180295070 -62369283 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 24 0 0 0 chr1 180295504 180295528 -62368825 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr1 180295826 180295853 -62368500 + AT_rich Low_complexity Low_complexity 1 27 0 395 359 46 15 chr1 180295940 180296135 -62368218 - LTR16A LTR ERVL -3 447 247 484 375 25 20 chr1 180296537 180296892 -62367461 - LTR16C LTR ERVL -2 489 133 336 104 0 0 chr1 180297998 180298046 -62366307 + AluSp/q SINE Alu 243 290 -13 1492 62 0 0 chr1 180298404 180298597 -62365756 + L1PA6 LINE L1 5734 5926 -228 23 54 0 0 chr1 180298715 180298752 -62365601 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 180299019 180299042 -62365311 + AT_rich Low_complexity Low_complexity 1 23 0 209 317 122 8 chr1 180299808 180299931 -62364422 + MIR SINE MIR 78 214 -48 946 123 78 6 chr1 180300020 180300199 -62364154 - L1MA1 LINE L1 0 6302 6111 289 222 11 11 chr1 180300386 180300476 -62363877 + (TA)n Simple_repeat Simple_repeat 1 90 0 24 0 0 0 chr1 180301125 180301149 -62363204 + AT_rich Low_complexity Low_complexity 1 24 0 192 97 0 0 chr1 180303013 180303044 -62361309 + (TA)n Simple_repeat Simple_repeat 2 32 0 209 369 150 13 chr1 180303327 180303560 -62360793 - L2 LINE L2 -386 2928 2664 190 214 71 0 chr1 180303773 180303815 -62360538 - L2 LINE L2 0 3313 3269 330 200 15 0 chr1 180304123 180304188 -62360165 - MLT2A2 LTR ERVL -233 220 155 7183 43 1 0 chr1 180304236 180305581 -62358772 + L1PA4 LINE L1 4506 5852 -303 22 35 0 0 chr1 180306608 180306637 -62357716 + AT_rich Low_complexity Low_complexity 1 29 0 301 98 0 0 chr1 180306983 180307034 -62357319 - L1MA3 LINE L1 0 6305 6255 209 167 19 19 chr1 180307404 180307458 -62356895 + (TTTAA)n Simple_repeat Simple_repeat 3 56 0 1183 201 55 60 chr1 180309366 180309750 -62354603 + MLT1C LTR MaLR 74 455 -12 284 286 169 32 chr1 180309832 180310021 -62354332 - MLT1H1 LTR MaLR -281 274 60 2043 75 0 27 chr1 180310271 180310584 -62353769 + AluY SINE Alu 4 311 0 1044 136 0 17 chr1 180310587 180310763 -62353590 + AluSg/x SINE Alu 125 297 -12 1133 242 67 96 chr1 180310770 180311675 -62352678 + L1MCa LINE L1 1039 1917 -4509 207 0 0 0 chr1 180311775 180311798 -62352555 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr1 180312048 180312068 -62352285 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 24 77 0 0 chr1 180312404 180312456 -62351897 + AT_rich Low_complexity Low_complexity 1 52 0 1016 38 15 0 chr1 180313777 180313909 -62350444 + L1PA4 LINE L1 6022 6155 0 2125 255 65 17 chr1 180313909 180315108 -62349245 - L1MDb LINE L1 -4431 1975 715 1323 287 57 22 chr1 180315288 180315744 -62348609 - L1MDb LINE L1 -5929 480 9 190 339 147 46 chr1 180316199 180316526 -62347827 + L2 LINE L2 2949 3308 -5 316 341 85 6 chr1 180316844 180317020 -62347333 - MLT1J LTR MaLR -51 460 271 228 149 54 81 chr1 180318498 180318572 -62345781 - L1MC4 LINE L1 -1325 6717 6646 367 239 115 9 chr1 180318584 180318697 -62345656 + MER50 LTR ERV1 1 125 -609 1045 274 99 21 chr1 180318708 180319131 -62345222 + MER50 LTR ERV1 61 516 -218 180 0 0 0 chr1 180319732 180319752 -62344601 + (CA)n Simple_repeat Simple_repeat 2 21 0 200 296 32 80 chr1 180320065 180320190 -62344163 + MIR SINE MIR 74 192 -70 23 33 0 0 chr1 180320946 180320976 -62343377 + AT_rich Low_complexity Low_complexity 1 30 0 231 218 0 0 chr1 180321056 180321111 -62343242 + L1MC4 LINE L1 6649 6703 -1339 319 280 161 21 chr1 180321282 180321468 -62342885 + LTR16C LTR ERVL 280 491 0 14165 115 32 28 chr1 180322113 180324810 -62339543 + Charlie3 DNA MER1_type 1 2706 -4 22 56 0 0 chr1 180325107 180325143 -62339210 + AT_rich Low_complexity Low_complexity 1 36 0 214 362 120 48 chr1 180325216 180325550 -62338803 + L2 LINE L2 2394 2751 -563 394 329 0 51 chr1 180325594 180325731 -62338622 + MER5A DNA MER1_type 60 189 0 1225 165 0 45 chr1 180326647 180327022 -62337331 - L1MA7 LINE L1 -11 6280 5817 279 105 0 0 chr1 180326998 180327036 -62337317 - L1MA7 LINE L1 -765 5537 5500 * 2228 212 30 37 chr1 180327035 180327630 -62336723 + L1M2 LINE L1 4787 5377 -769 452 91 0 0 chr1 180327632 180327698 -62336655 + MER41A LTR ERV1 401 466 -88 721 181 0 41 chr1 180327702 180327873 -62336480 + L1M2 LINE L1 5366 5529 -762 357 62 0 0 chr1 180328065 180328113 -62336240 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 0 0 0 chr1 180329692 180329716 -62334637 + AT_rich Low_complexity Low_complexity 1 24 0 217 346 25 0 chr1 180330185 180330266 -62334087 + L2 LINE L2 3186 3268 -4 397 371 97 22 chr1 180330969 180331557 -62332796 - L2 LINE L2 -952 2362 1731 198 0 0 0 chr1 180331788 180331810 -62332543 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 34039 99 9 1 chr1 180332522 180336498 -62327855 - HERVL-A2 LTR ERVL -985 4669 649 194 0 39 0 chr1 180336498 180336524 -62327829 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 34039 99 9 1 chr1 180336524 180337179 -62327174 - HERVL-A2 LTR ERVL -5005 649 1 345 98 0 0 chr1 180337179 180337230 -62327123 - MLT2A2 LTR ERVL 0 453 403 334 232 98 0 chr1 180337254 180337336 -62327017 + L1MC4 LINE L1 6614 6703 -1339 224 273 0 0 chr1 180337336 180337380 -62326973 + (TG)n Simple_repeat Simple_repeat 2 45 0 3026 86 0 10 chr1 180337380 180337788 -62326565 - MLT2A1 LTR ERVL -40 404 1 35 83 0 0 chr1 180339480 180339564 -62324789 + AT_rich Low_complexity Low_complexity 1 84 0 1210 264 33 28 chr1 180341052 180341415 -62322938 + MLT1A1 LTR MaLR 1 365 0 413 336 110 23 chr1 180342445 180342799 -62321554 + HAL1 LINE L1 22 406 -2101 250 132 38 0 chr1 180342980 180343033 -62321320 + (TA)n Simple_repeat Simple_repeat 1 55 0 229 299 0 0 chr1 180343033 180343100 -62321253 + L1MD3 LINE L1 6612 6678 -1317 447 252 23 53 chr1 180343466 180343597 -62320756 + MER63A DNA MER1_type 58 184 -26 21 57 0 0 chr1 180344430 180344465 -62319888 + AT_rich Low_complexity Low_complexity 1 35 0 240 314 20 0 chr1 180345050 180345152 -62319201 + CT-rich Low_complexity Low_complexity 1 104 0 183 42 0 0 chr1 180345352 180345376 -62318977 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 202 297 148 31 chr1 180345734 180345862 -62318491 + L3 LINE CR1 1278 1420 -157 736 282 58 4 chr1 180346642 180346883 -62317470 - MIR SINE MIR 0 262 9 21 89 0 0 chr1 180347700 180347756 -62316597 + AT_rich Low_complexity Low_complexity 1 56 0 30 27 0 0 chr1 180347798 180347835 -62316518 + AT_rich Low_complexity Low_complexity 1 37 0 207 213 0 21 chr1 180349208 180349255 -62315098 + CT-rich Low_complexity Low_complexity 2 47 0 267 31 0 0 chr1 180349359 180349391 -62314962 + (A)n Simple_repeat Simple_repeat 1 32 0 2077 169 16 8 chr1 180349395 180349767 -62314586 - THE1C LTR MaLR 0 375 1 718 127 0 0 chr1 180349871 180349981 -62314372 + AluSg/x SINE Alu 196 305 -5 357 273 16 23 chr1 180350175 180350303 -62314050 - L1ME LINE L1 -358 5812 5686 269 204 71 53 chr1 180350863 180350976 -62313377 - L1ME LINE L1 -735 5431 5317 588 61 31 0 chr1 180351047 180351145 -62313208 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 28 48 0 0 chr1 180351234 180351276 -62313077 + AT_rich Low_complexity Low_complexity 1 42 0 206 230 27 14 chr1 180351310 180351384 -62312969 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 448 206 24 63 chr1 180351653 180351779 -62312574 + MER20 DNA MER1_type 96 216 -3 858 152 30 86 chr1 180352684 180352882 -62311471 + MER20 DNA MER1_type 24 210 -9 24 0 0 0 chr1 180353565 180353589 -62310764 + AT_rich Low_complexity Low_complexity 1 24 0 5243 116 14 36 chr1 180353636 180354516 -62309837 + L1PB2 LINE L1 5292 6151 0 994 184 325 49 chr1 180354787 180355178 -62309175 + L1MC3 LINE L1 7259 7757 -28 1631 181 50 3 chr1 180355210 180355492 -62308861 + AluJb SINE Alu 1 295 -17 28 29 0 0 chr1 180357321 180357356 -62306997 + AT_rich Low_complexity Low_complexity 1 35 0 233 190 0 17 chr1 180357360 180357418 -62306935 + MLT1J2 LTR MaLR 357 413 -37 21 36 0 0 chr1 180357577 180357605 -62306748 + AT_rich Low_complexity Low_complexity 1 28 0 702 147 0 0 chr1 180357846 180357948 -62306405 + FLAM_C SINE Alu 17 118 -25 360 0 0 0 chr1 180357952 180357992 -62306361 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 252 0 0 0 chr1 180358394 180358422 -62305931 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 29 0 0 0 chr1 180358542 180358571 -62305782 + AT_rich Low_complexity Low_complexity 1 29 0 1661 169 25 0 chr1 180358887 180359203 -62305150 + AluSx SINE Alu 1 323 0 21 82 0 0 chr1 180359442 180359491 -62304862 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr1 180359672 180359707 -62304646 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 180360878 180360915 -62303438 + AT_rich Low_complexity Low_complexity 1 37 0 654 235 16 33 chr1 180361068 180361251 -62303102 + MER3 DNA MER1_type 1 180 -29 25 65 0 0 chr1 180361356 180361402 -62302951 + AT_rich Low_complexity Low_complexity 1 46 0 336 330 101 9 chr1 180364326 180364544 -62299809 - L1ME LINE L1 -538 5626 5386 1371 207 113 67 chr1 180365256 180365443 -62298910 + LTR36 LTR ERV1 1 178 -433 2156 136 0 0 chr1 180365443 180365753 -62298600 + AluSx SINE Alu 1 310 -2 1371 207 113 67 chr1 180365753 180365937 -62298416 + LTR36 LTR ERV1 178 389 -222 339 172 47 0 chr1 180366131 180366195 -62298158 - MER49 LTR ERV1 -171 752 686 695 179 83 6 chr1 180366195 180366351 -62298002 - LTR36-int LTR ERV1 -168 6163 5996 4208 187 48 15 chr1 180366466 180367391 -62296962 - LTR36-int LTR ERV1 -578 5753 4799 4534 159 16 7 chr1 180367504 180368343 -62296010 - LTR36-int LTR ERV1 -1788 3968 2302 938 174 87 15 chr1 180368389 180368585 -62295768 - LTR36-int LTR ERV1 -2602 2278 2069 * 1974 201 66 73 chr1 180368576 180368820 -62295533 - LTR36-int LTR ERV1 -2951 3725 3481 1821 135 0 21 chr1 180368820 180369102 -62295251 + AluJb SINE Alu 12 287 -25 1974 201 66 73 chr1 180369102 180369862 -62294491 - LTR36-int LTR ERV1 -3195 3481 786 799 284 28 14 chr1 180369908 180370126 -62294227 - LTR36-int LTR ERV1 -2716 1569 1349 563 357 44 16 chr1 180370459 180370708 -62293645 - LTR36-int LTR ERV1 -1418 368 113 2512 158 119 47 chr1 180370775 180371345 -62293008 - LTR36 LTR ERV1 0 611 1 4765 114 51 0 chr1 180371527 180372235 -62292118 + HSMAR1 DNA Mariner 1 744 -543 1669 235 50 29 chr1 180372240 180372784 -62291569 - L1MB7 LINE L1 -54 6628 6074 * 1792 220 57 136 chr1 180372772 180373915 -62290438 - L1MCa LINE L1 -5011 1034 37 2051 243 28 45 chr1 180373915 180375035 -62289318 - L1MB7 LINE L1 -570 6106 5002 1341 241 85 40 chr1 180375035 180375482 -62288871 - L1MB7 LINE L1 -4882 1660 1186 2118 105 3 29 chr1 180375482 180375796 -62288557 + AluY SINE Alu 1 306 -5 1341 241 85 40 chr1 180375796 180375854 -62288499 - L1MB7 LINE L1 -5356 1186 1132 243 0 0 0 chr1 180375870 180375897 -62288456 + (TG)n Simple_repeat Simple_repeat 2 28 0 303 210 49 25 chr1 180375924 180376086 -62288267 + (TATAA)n Simple_repeat Simple_repeat 3 168 0 2942 266 44 59 chr1 180376102 180376648 -62287705 - L1MB7 LINE L1 -5431 1111 589 976 205 82 88 chr1 180376648 180377101 -62287252 - LTR7 LTR ERV1 0 450 1 2942 266 44 59 chr1 180377101 180377675 -62286678 - L1MB7 LINE L1 -5953 589 8 280 278 0 33 chr1 180378084 180378174 -62286179 - LTR67 LTR ERVL -40 517 431 231 219 0 49 chr1 180378547 180378629 -62285724 - L1MC4 LINE L1 -1351 6691 6614 4089 91 68 2 chr1 180380297 180380901 -62283452 - LTR9B LTR ERV1 0 644 1 31 26 0 0 chr1 180380987 180381025 -62283328 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr1 180381441 180381461 -62282892 + (TTG)n Simple_repeat Simple_repeat 2 21 0 315 238 60 0 chr1 180381746 180381830 -62282523 - L1MC4 LINE L1 -1337 6705 6617 518 299 60 67 chr1 180382009 180382307 -62282046 - L2 LINE L2 -2 3311 3016 1053 197 91 42 chr1 180383246 180383576 -62280777 + L1MA7 LINE L1 5946 6291 0 6766 32 2 0 chr1 180384115 180384931 -62279422 - L1PA3 LINE L1 -1748 4398 3581 8369 29 0 6 chr1 180384931 180386705 -62277648 + L1PA3 LINE L1 4383 6151 -4 215 233 0 0 chr1 180387467 180387510 -62276843 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 1909 158 7 0 chr1 180387684 180387988 -62276365 - AluJb SINE Alu -6 306 1 1723 190 60 7 chr1 180388047 180388462 -62275891 + Tigger2 DNA MER2_type 4 440 -2278 30 0 0 0 chr1 180388512 180388542 -62275811 + AT_rich Low_complexity Low_complexity 1 30 0 42 20 0 0 chr1 180388572 180388621 -62275732 + AT_rich Low_complexity Low_complexity 1 49 0 2037 132 0 7 chr1 180389950 180390254 -62274099 + AluSg SINE Alu 1 302 -8 197 122 61 0 chr1 180390900 180390949 -62273404 + T-rich Low_complexity Low_complexity 4 55 0 2014 126 7 0 chr1 180390959 180391245 -62273108 - AluSx SINE Alu -24 288 1 295 192 0 0 chr1 180392508 180392560 -62271793 + L1M1 LINE L1 766 817 -6748 21 0 0 0 chr1 180394016 180394037 -62270316 + AT_rich Low_complexity Low_complexity 1 21 0 2127 120 3 0 chr1 180394294 180394595 -62269758 + AluSq SINE Alu 1 302 -11 225 191 0 0 chr1 180394944 180394991 -62269362 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1277 174 25 25 chr1 180395073 180395315 -62269038 + L1MA3 LINE L1 9 250 -7315 326 49 0 0 chr1 180395341 180395382 -62268971 + MLT2A1 LTR ERVL 404 444 0 2747 147 60 40 chr1 180395382 180396002 -62268351 + L1MA3 LINE L1 2876 3507 -4058 * 6301 158 16 10 chr1 180395992 180397353 -62267000 + L1MA3 LINE L1 6364 7723 -1 235 250 0 0 chr1 180397928 180397984 -62266369 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 2590 192 34 35 chr1 180398119 180398319 -62266034 - MER6A DNA MER2_type -299 566 367 2142 61 54 14 chr1 180398319 180398613 -62265740 + AluY SINE Alu 1 306 -5 2590 192 34 35 chr1 180398613 180398979 -62265374 - MER6A DNA MER2_type -498 367 1 1567 183 39 56 chr1 180399220 180399630 -62264723 + MLT1C LTR MaLR 53 455 -12 284 286 169 32 chr1 180399712 180399901 -62264452 - MLT1H1 LTR MaLR -281 274 60 2658 29 0 3 chr1 180400148 180400457 -62263896 + AluY SINE Alu 1 308 -3 354 353 156 10 chr1 180400707 180400996 -62263357 - L2 LINE L2 -62 3251 2921 1511 267 102 26 chr1 180401972 180402645 -62261708 - L1MEc LINE L1 -4090 2306 1686 305 24 24 0 chr1 180402645 180402687 -62261666 + (TG)n Simple_repeat Simple_repeat 2 44 0 1511 267 102 26 chr1 180402687 180403243 -62261110 - L1MEc LINE L1 -4710 1686 907 454 273 77 32 chr1 180403666 180403886 -62260467 + L1M4 LINE L1 3745 3974 -2172 26 0 0 0 chr1 180403890 180403916 -62260437 + AT_rich Low_complexity Low_complexity 1 26 0 327 49 0 0 chr1 180404915 180404956 -62259397 + (CA)n Simple_repeat Simple_repeat 2 42 0 3492 154 40 0 chr1 180405508 180406157 -62258196 + L1MA4 LINE L1 5620 6294 -6 21 57 0 0 chr1 180406436 180406471 -62257882 + AT_rich Low_complexity Low_complexity 1 35 0 2000 159 0 0 chr1 180407609 180407918 -62256435 - AluSx SINE Alu -2 310 2 287 333 92 56 chr1 180408512 180408869 -62255484 - L2 LINE L2 -8 3305 2936 1923 312 198 32 chr1 180408876 180410226 -62254127 - L2 LINE L2 -522 2792 1219 251 226 0 118 chr1 180410607 180410700 -62253653 - MLT1J2 LTR MaLR -319 131 50 46 0 0 0 chr1 180410754 180410800 -62253553 + AT_rich Low_complexity Low_complexity 1 46 0 346 181 181 0 chr1 180410916 180410988 -62253365 + MER67C LTR ERV1 1 85 -429 986 250 134 35 chr1 180411015 180411465 -62252888 + MER67C LTR ERV1 57 511 -3 2001 143 0 13 chr1 180412915 180413229 -62251124 - AluSx SINE Alu -2 310 1 323 268 19 13 chr1 180414095 180414252 -62250101 + (TA)n Simple_repeat Simple_repeat 1 158 0 369 315 139 16 chr1 180414263 180414514 -62249839 + L1MEc LINE L1 1536 1817 -4579 940 290 47 31 chr1 180414587 180415042 -62249311 - L1MEc LINE L1 -4917 940 525 774 232 32 27 chr1 180415089 180415274 -62249079 - MER20 DNA MER1_type -5 214 29 609 329 64 40 chr1 180415338 180415742 -62248611 - L1MEc LINE L1 -5926 470 57 1115 270 119 35 chr1 180415887 180416350 -62248003 + MLT1D LTR MaLR 2 503 -2 204 254 0 56 chr1 180416662 180416733 -62247620 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 24 53 0 0 chr1 180416769 180416807 -62247546 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr1 180417991 180418031 -62246322 + AT_rich Low_complexity Low_complexity 1 40 0 21 89 0 0 chr1 180418296 180418352 -62246001 + AT_rich Low_complexity Low_complexity 1 56 0 191 233 50 117 chr1 180419723 180419843 -62244510 - MIR SINE MIR -72 190 79 350 132 0 0 chr1 180419853 180419906 -62244447 - MLT2A1 LTR ERVL -1 452 400 210 143 0 0 chr1 180419937 180419972 -62244381 + (TG)n Simple_repeat Simple_repeat 1 35 0 2469 118 26 18 chr1 180419972 180420362 -62243991 - MLT2A1 LTR ERVL -45 399 7 410 140 54 0 chr1 180420369 180420462 -62243891 - HERVL-A1 LTR ERVL 0 5654 5557 3354 74 2 14 chr1 180420562 180421006 -62243347 - HERVL-A1 LTR ERVL -714 4940 4502 2178 196 23 33 chr1 180421012 180421532 -62242821 - L1 LINE L1 -938 5208 4694 1650 216 96 17 chr1 180421543 180421742 -62242611 + L1 LINE L1 4197 4379 -1767 402 21 0 0 chr1 180421742 180421789 -62242564 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1650 216 96 17 chr1 180421789 180422066 -62242287 + L1 LINE L1 4379 4711 -1435 453 116 0 0 chr1 180422916 180422985 -62241368 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 554 374 35 0 chr1 180422995 180423222 -62241131 + L2 LINE L2 2827 3061 -252 190 0 67 0 chr1 180423365 180423395 -62240958 + (TTA)n Simple_repeat Simple_repeat 3 34 0 564 0 15 0 chr1 180423395 180423461 -62240892 - L1PA3 LINE L1 -18 6137 6071 8933 29 0 0 chr1 180423461 180424545 -62239808 + L1P LINE L1 2139 3222 -2924 308 302 35 0 chr1 180424597 180424683 -62239670 + L2 LINE L2 3225 3313 0 22 35 0 0 chr1 180424960 180424989 -62239364 + AT_rich Low_complexity Low_complexity 1 29 0 3298 16 3 0 chr1 180425714 180426095 -62238258 + L1HS LINE L1 5774 6155 0 375 323 74 11 chr1 180426095 180426284 -62238069 - MER5C DNA MER1_type -122 202 2 687 324 84 45 chr1 180426426 180426913 -62237440 - L2 LINE L2 -2755 559 54 266 273 58 4 chr1 180428239 180428408 -62235945 - MIR SINE MIR -2 260 15 242 95 24 0 chr1 180429434 180429476 -62234877 + (TC)n Simple_repeat Simple_repeat 2 44 0 25 0 0 0 chr1 180429498 180429523 -62234830 + AT_rich Low_complexity Low_complexity 1 25 0 313 238 40 50 chr1 180429920 180430021 -62234332 - L2 LINE L2 -1 3312 3213 1914 259 58 60 chr1 180430476 180430923 -62233430 + L1ME1 LINE L1 5354 5778 -388 2032 128 0 3 chr1 180430923 180431211 -62233142 - AluSq SINE Alu -26 287 1 1914 259 58 60 chr1 180431211 180431598 -62232755 + L1ME1 LINE L1 5778 6164 -2 231 250 0 0 chr1 180431745 180431789 -62232564 + MIR SINE MIR 104 147 -115 301 243 42 83 chr1 180431796 180431940 -62232413 - L2 LINE L2 -1 3312 3175 21 0 0 0 chr1 180431989 180432010 -62232343 + AT_rich Low_complexity Low_complexity 1 21 0 209 250 10 29 chr1 180432020 180432124 -62232229 + (TA)n Simple_repeat Simple_repeat 2 103 0 2276 159 82 55 chr1 180432333 180432505 -62231848 - MER4E LTR ERV1 0 779 613 2085 112 3 26 chr1 180432505 180432808 -62231545 + AluSq SINE Alu 1 296 -17 2276 159 82 55 chr1 180432808 180433228 -62231125 - MER4E LTR ERV1 -166 613 1 238 278 178 0 chr1 180433529 180433619 -62230734 - HAL1 LINE L1 -2355 152 47 2021 202 13 11 chr1 180433622 180434004 -62230349 - MLT1B LTR MaLR -7 383 1 25 0 0 0 chr1 180434299 180434324 -62230029 + AT_rich Low_complexity Low_complexity 1 25 0 838 243 28 9 chr1 180434712 180434926 -62229427 + MER20 DNA MER1_type 1 218 -1 661 251 127 56 chr1 180435587 180435942 -62228411 + HAL1 LINE L1 933 1312 -1195 304 264 0 0 chr1 180436124 180436215 -62228138 + HAL1 LINE L1 2232 2322 -185 41 36 0 0 chr1 180436562 180436617 -62227736 + AT_rich Low_complexity Low_complexity 1 55 0 4202 220 71 9 chr1 180437582 180439181 -62225172 + L1MC2 LINE L1 4642 6343 -1 5981 165 63 5 chr1 180439328 180440459 -62223894 - Tigger3b DNA MER2_type 0 1231 36 426 214 0 24 chr1 180440448 180440532 -62223821 - MER7A DNA MER2_type -266 80 1 * 413 65 0 16 chr1 180440960 180441022 -62223331 + (TTTTA)n Simple_repeat Simple_repeat 2 62 0 2151 91 0 0 chr1 180441022 180441297 -62223056 - AluSx SINE Alu -32 280 6 21 0 0 0 chr1 180441307 180441328 -62223025 + AT_rich Low_complexity Low_complexity 1 21 0 1582 313 49 51 chr1 180442428 180443268 -62221085 + L1M3d LINE L1 13 850 -5041 463 163 52 9 chr1 180443273 180443400 -62220953 + L1M3d LINE L1 935 1070 -4821 2342 140 51 17 chr1 180443400 180443814 -62220539 - MSTA LTR MaLR 0 428 1 7020 198 80 33 chr1 180443815 180444489 -62219864 - MSTA-int LTR MaLR -1 1650 1009 3126 30 5 0 chr1 180444489 180444860 -62219493 - L1PA5 LINE L1 0 6154 5782 7020 198 80 33 chr1 180444860 180445757 -62218596 - MSTA-int LTR MaLR -642 1009 5 1296 179 9 5 chr1 180445777 180446001 -62218352 - MSTA LTR MaLR -203 225 1 234 250 47 0 chr1 180446002 180446066 -62218287 + L1M3d LINE L1 1068 1134 -4757 340 189 18 36 chr1 180446082 180446193 -62218160 + L1M3d LINE L1 2684 2792 -3178 * 2120 263 28 31 chr1 180446184 180447294 -62217059 + L1M4c LINE L1 2153 3261 -3121 251 28 28 0 chr1 180449543 180449579 -62214774 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2093 103 7 0 chr1 180449581 180449863 -62214490 - AluSg SINE Alu -12 298 15 27 73 0 0 chr1 180450296 180450351 -62214002 + AT_rich Low_complexity Low_complexity 1 55 0 981 245 9 0 chr1 180450359 180450592 -62213761 + MER46A DNA MER2_type 2 236 0 23 33 0 0 chr1 180450845 180450875 -62213478 + AT_rich Low_complexity Low_complexity 1 30 0 2572 127 45 0 chr1 180451261 180451679 -62212674 - L1PA13 LINE L1 -2 6161 5725 1894 234 40 20 chr1 180451804 180452753 -62211600 - Tigger6a DNA MER2_type -85 998 2 31 0 0 0 chr1 180453329 180453360 -62210993 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 180453725 180453746 -62210607 + AT_rich Low_complexity Low_complexity 1 21 0 344 322 113 41 chr1 180454358 180454703 -62209650 - MLT1J2 LTR MaLR -78 372 3 432 55 0 0 chr1 180454796 180454851 -62209502 + (CA)n Simple_repeat Simple_repeat 2 56 0 2622 194 25 6 chr1 180455147 180455668 -62208685 - Tigger2 DNA MER2_type -2 2716 2186 * 2930 147 60 0 chr1 180455660 180456156 -62208197 - Tigger2 DNA MER2_type -1998 720 195 991 210 18 13 chr1 180456318 180456542 -62207811 - Tigger2 DNA MER2_type -2493 225 1 229 274 63 29 chr1 180456542 180456665 -62207688 - MIR SINE MIR -58 204 72 2133 173 7 29 chr1 180457056 180457477 -62206876 + MLT2D LTR ERVL 3 414 0 2212 81 0 0 chr1 180457498 180457795 -62206558 - L1PA7 LINE L1 -13 6141 5845 1272 240 29 73 chr1 180457795 180458179 -62206174 + MLT1D LTR MaLR 127 493 -12 212 309 64 32 chr1 180459380 180459474 -62204879 - MIR SINE MIR -35 227 131 1599 87 0 0 chr1 180460987 180461206 -62203147 - L1P LINE L1 -5917 229 11 2614 236 56 67 chr1 180461281 180462992 -62201361 + L1MCb LINE L1 124 1813 -4751 738 263 48 16 chr1 180462968 180463219 -62201134 + L1MCa LINE L1 1 259 -6167 * 534 203 39 8 chr1 180463212 180463340 -62201013 + L1MCa LINE L1 785 916 -5510 * 23 68 0 0 chr1 180463430 180463474 -62200879 + AT_rich Low_complexity Low_complexity 1 44 0 10961 248 37 8 chr1 180463993 180464974 -62199379 + L1PA16 LINE L1 1331 2282 -4515 351 113 0 0 chr1 180464974 180465027 -62199326 + (CA)n Simple_repeat Simple_repeat 2 54 0 10961 248 37 8 chr1 180465027 180467978 -62196375 + L1PA16 LINE L1 2282 5387 -1410 5000 172 8 5 chr1 180467971 180468853 -62195500 + L1PA16 LINE L1 5928 6812 -5 * 438 276 35 0 chr1 180469298 180469414 -62194939 + MIR SINE MIR 117 236 -26 2115 103 0 20 chr1 180469605 180469906 -62194447 - AluSg SINE Alu -14 296 2 183 42 0 0 chr1 180470184 180470208 -62194145 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 2039 119 7 7 chr1 180470397 180470707 -62193646 - AluSg SINE Alu 0 310 1 201 267 0 23 chr1 180471238 180471324 -62193029 + T-rich Low_complexity Low_complexity 4 87 0 266 203 47 0 chr1 180471509 180471573 -62192780 - MLT1-int LTR MaLR -865 506 440 466 297 158 15 chr1 180471840 180472306 -62192047 - MLT1G LTR MaLR -2 588 1 356 64 0 0 chr1 180473985 180474032 -62190321 - L1P2 LINE L1 -626 5528 5482 904 226 0 47 chr1 180474113 180474325 -62190028 - MLT1A1 LTR MaLR -3 502 301 1100 246 30 30 chr1 180474415 180474749 -62189604 - MLT1A1 LTR MaLR -22 343 10 337 304 73 64 chr1 180475223 180475427 -62188926 + MIR SINE MIR 28 233 -29 311 340 50 21 chr1 180476590 180476731 -62187622 - L2 LINE L2 0 3313 3169 775 211 7 29 chr1 180476736 180476946 -62187407 - LTR1 LTR ERV1 -582 203 1 6984 73 19 0 chr1 180477016 180478293 -62186060 + L1PA7 LINE L1 4852 6150 -4 258 343 45 17 chr1 180478455 180478744 -62185609 + L1M4 LINE L1 4747 5043 -1103 27 29 0 0 chr1 180479022 180479056 -62185297 + AT_rich Low_complexity Low_complexity 1 34 0 1772 226 52 61 chr1 180480151 180480612 -62183741 - MLT2B3 LTR ERVL 0 554 98 1095 117 1 10 chr1 180480713 180481499 -62182854 + (CATTC)n Satellite Satellite 1 779 0 933 157 0 6 chr1 180481521 180481863 -62182490 + (CATTC)n Satellite Satellite 3 341 0 837 150 0 0 chr1 180481879 180482059 -62182294 + (CATTC)n Satellite Satellite 1 180 0 1164 108 0 19 chr1 180482095 180482707 -62181646 + (CATTC)n Satellite Satellite 1 600 0 1045 117 3 37 chr1 180482721 180483263 -62181090 + (CATTC)n Satellite Satellite 4 351 0 924 138 3 2 chr1 180483279 180483901 -62180452 + (CATTC)n Satellite Satellite 1 623 0 1188 130 3 0 chr1 180483916 180484269 -62180084 + (CATTC)n Satellite Satellite 1 354 0 985 112 6 6 chr1 180484282 180484460 -62179893 + (CATTC)n Satellite Satellite 3 180 0 818 136 0 27 chr1 180484476 180484660 -62179693 + (CATTC)n Satellite Satellite 2 180 0 561 144 0 0 chr1 180484673 180484791 -62179562 + (CATTC)n Satellite Satellite 4 121 0 1011 129 2 2 chr1 180484806 180485403 -62178950 + (CATTC)n Satellite Satellite 1 597 0 1231 104 4 21 chr1 180485419 180486316 -62178037 + (CATTC)n Satellite Satellite 1 881 0 785 123 0 25 chr1 180486328 180486490 -62177863 + (CATTC)n Satellite Satellite 2 159 0 997 131 6 3 chr1 180486502 180486831 -62177522 + (CATTC)n Satellite Satellite 1 330 0 1062 145 0 3 chr1 180486846 180487196 -62177157 + (CATTC)n Satellite Satellite 2 350 0 1056 103 0 0 chr1 180487211 180487385 -62176968 + (CATTC)n Satellite Satellite 2 175 0 1320 103 0 12 chr1 180487396 180487826 -62176527 + (CATTC)n Satellite Satellite 1 425 0 1122 100 0 0 chr1 180487845 180488025 -62176328 + (CATTC)n Satellite Satellite 1 180 0 1080 131 2 8 chr1 180488046 180489227 -62175126 + (CATTC)n Satellite Satellite 1 1173 0 1101 148 0 6 chr1 180489249 180489606 -62174747 + (CATTC)n Satellite Satellite 3 356 0 1164 115 1 22 chr1 180489618 180490469 -62173884 + (CATTC)n Satellite Satellite 1 833 0 1122 119 3 18 chr1 180490490 180491136 -62173217 + (CATTC)n Satellite Satellite 1 636 0 981 128 0 0 chr1 180491164 180491344 -62173009 + (CATTC)n Satellite Satellite 1 180 0 962 128 3 32 chr1 180491365 180491722 -62172631 + (CATTC)n Satellite Satellite 2 347 0 795 103 0 72 chr1 180491748 180491942 -62172411 + (CATTC)n Satellite Satellite 1 180 0 1135 135 4 15 chr1 180491953 180492770 -62171583 + (CATTC)n Satellite Satellite 1 807 0 984 103 0 0 chr1 180492785 180492950 -62171403 + (CATTC)n Satellite Satellite 2 166 0 1008 126 0 4 chr1 180492965 180493225 -62171128 + (CATTC)n Satellite Satellite 2 260 0 766 126 6 28 chr1 180493240 180493422 -62170931 + (CATTC)n Satellite Satellite 2 179 0 267 192 0 0 chr1 180493434 180493512 -62170841 + (CATTC)n Satellite Satellite 2 79 0 837 93 0 72 chr1 180493528 180493722 -62170631 + (CATTC)n Satellite Satellite 1 180 0 1102 135 2 14 chr1 180493733 180494773 -62169580 + (CATTC)n Satellite Satellite 1 1028 0 462 119 0 0 chr1 180494790 180494874 -62169479 + (CATTC)n Satellite Satellite 3 86 0 1146 107 2 21 chr1 180494889 180495437 -62168916 + (CATTC)n Satellite Satellite 1 537 0 1221 93 3 18 chr1 180495474 180495807 -62168546 + (CATTC)n Satellite Satellite 2 329 0 1063 81 12 0 chr1 180495823 180495996 -62168357 + (CATTC)n Satellite Satellite 2 176 0 798 153 0 0 chr1 180496011 180496188 -62168165 + (CATTC)n Satellite Satellite 2 178 0 234 62 0 0 chr1 180496332 180496364 -62167989 + (CATTC)n Satellite Satellite 5 36 0 962 137 3 19 chr1 180496379 180496992 -62167361 + (CATTC)n Satellite Satellite 1 603 0 1139 106 0 0 chr1 180497003 180497182 -62167171 + (CATTC)n Satellite Satellite 2 180 0 1177 81 3 34 chr1 180497200 180497567 -62166786 + (CATTC)n Satellite Satellite 4 356 0 839 121 3 39 chr1 180497583 180497956 -62166397 + (CATTC)n Satellite Satellite 1 359 0 866 123 6 0 chr1 180497984 180498146 -62166207 + (CATTC)n Satellite Satellite 4 166 0 1143 94 0 0 chr1 180498165 180498345 -62166008 + (CATTC)n Satellite Satellite 1 180 0 542 182 6 0 chr1 180498366 180498525 -62165828 + (CATTC)n Satellite Satellite 2 161 0 1143 135 0 0 chr1 180498540 180498875 -62165478 + (CATTC)n Satellite Satellite 1 335 0 1014 122 0 0 chr1 180498894 180499074 -62165279 + (CATTC)n Satellite Satellite 1 180 0 1185 96 0 0 chr1 180499095 180499273 -62165080 + (CATTC)n Satellite Satellite 2 179 0 810 90 4 45 chr1 180499285 180499514 -62164839 + (CATTC)n Satellite Satellite 1 219 0 1212 71 0 0 chr1 180499529 180499697 -62164656 + (CATTC)n Satellite Satellite 2 169 0 875 116 0 28 chr1 180499709 180499890 -62164463 + (CATTC)n Satellite Satellite 2 177 0 329 109 16 0 chr1 180499914 180499978 -62164375 + (CATTC)n Satellite Satellite 2 66 0 1095 94 0 0 chr1 180499993 180500164 -62164189 + (CATTC)n Satellite Satellite 2 172 0 833 124 0 27 chr1 180500177 180500362 -62163991 + (CATTC)n Satellite Satellite 1 180 0 978 127 0 0 chr1 180500378 180500722 -62163631 + (CATTC)n Satellite Satellite 1 344 0 1077 147 0 6 chr1 180500744 180501096 -62163257 + (CATTC)n Satellite Satellite 3 351 0 837 150 0 0 chr1 180501112 180501292 -62163061 + (CATTC)n Satellite Satellite 1 180 0 1046 130 3 13 chr1 180501328 180501619 -62162734 + (CATTC)n Satellite Satellite 1 288 0 1056 109 3 20 chr1 180501631 180501979 -62162374 + (CATTC)n Satellite Satellite 2 343 0 333 47 0 0 chr1 180501993 180502036 -62162317 + (CATTC)n Satellite Satellite 4 46 0 324 119 0 0 chr1 180502158 180502217 -62162136 + (GAATG)n Satellite Satellite 2 60 0 1011 113 1 34 chr1 180502233 180503089 -62161264 + (GAATG)n Satellite Satellite 2 995 0 831 82 0 68 chr1 180503115 180503344 -62161009 + (GAATG)n Satellite Satellite 1 213 0 1146 87 0 0 chr1 180503356 180503529 -62160824 + (GAATG)n Satellite Satellite 2 174 0 1144 113 2 30 chr1 180503575 180504063 -62160290 + (GAATG)n Satellite Satellite 1 474 0 1026 131 2 7 chr1 180504079 180504926 -62159427 + (GAATG)n Satellite Satellite 1 1022 0 1021 120 3 14 chr1 180504938 180505347 -62159006 + (GAATG)n Satellite Satellite 1 581 0 1014 117 0 0 chr1 180505347 180505526 -62158827 + (GAATG)n Satellite Satellite 2 180 0 1101 123 0 2 chr1 180505817 180506124 -62158229 + (GAATG)n Satellite Satellite 1 485 0 978 112 0 0 chr1 180506146 180506315 -62158038 + (GAATG)n Satellite Satellite 2 170 0 1179 127 0 0 chr1 180506330 180506685 -62157668 + (GAATG)n Satellite Satellite 1 355 0 746 142 5 0 chr1 180506700 180506919 -62157434 + (GAATG)n Satellite Satellite 1 220 0 1146 104 0 3 chr1 180506935 180507694 -62156659 + (GAATG)n Satellite Satellite 2 929 0 494 138 9 0 chr1 180507709 180507818 -62156535 + (GAATG)n Satellite Satellite 2 111 0 1003 106 4 31 chr1 180507834 180508209 -62156144 + (GAATG)n Satellite Satellite 1 540 0 1035 134 0 0 chr1 180508223 180508617 -62155736 + (GAATG)n Satellite Satellite 1 394 0 801 119 4 38 chr1 180508629 180508896 -62155457 + (GAATG)n Satellite Satellite 1 258 0 1078 94 6 6 chr1 180508922 180509102 -62155251 + (GAATG)n Satellite Satellite 1 180 0 1035 117 0 0 chr1 180509132 180509312 -62155041 + (GAATG)n Satellite Satellite 1 180 0 473 147 9 0 chr1 180509336 180509445 -62154908 + (GAATG)n Satellite Satellite 2 111 0 991 113 6 17 chr1 180509460 180509808 -62154545 + (GAATG)n Satellite Satellite 1 520 0 1299 107 0 19 chr1 180509822 180510276 -62154077 + (GAATG)n Satellite Satellite 1 620 0 1062 112 0 0 chr1 180510276 180510454 -62153899 + (GAATG)n Satellite Satellite 2 179 0 1089 114 2 19 chr1 180510750 180511193 -62153160 + (GAATG)n Satellite Satellite 2 611 0 1005 119 2 27 chr1 180511209 180511583 -62152770 + (GAATG)n Satellite Satellite 1 540 0 1120 101 3 3 chr1 180511603 180511967 -62152386 + (GAATG)n Satellite Satellite 1 364 0 264 91 0 0 chr1 180512709 180512753 -62151600 + (GAATG)n Satellite Satellite 2 45 0 1134 131 0 0 chr1 180512769 180513183 -62151170 + (GAATG)n Satellite Satellite 1 414 0 1026 107 0 0 chr1 180513195 180513363 -62150990 + (GAATG)n Satellite Satellite 2 169 0 810 124 0 0 chr1 180513375 180513528 -62150825 + (GAATG)n Satellite Satellite 2 154 0 1032 92 0 0 chr1 180513540 180513703 -62150650 + (GAATG)n Satellite Satellite 2 164 0 537 144 0 0 chr1 180513718 180513836 -62150517 + (GAATG)n Satellite Satellite 4 121 0 1071 121 1 9 chr1 180513857 180515076 -62149277 + (GAATG)n Satellite Satellite 2 1387 0 793 93 0 56 chr1 180515091 180515253 -62149100 + (GAATG)n Satellite Satellite 4 156 0 1275 95 0 0 chr1 180515281 180515646 -62148707 + (GAATG)n Satellite Satellite 1 365 0 653 158 0 24 chr1 180515670 180515834 -62148519 + (GAATG)n Satellite Satellite 2 161 0 1128 101 0 0 chr1 180515846 180516024 -62148329 + (GAATG)n Satellite Satellite 2 179 0 1074 139 3 0 chr1 180516041 180516387 -62147966 + (GAATG)n Satellite Satellite 1 347 0 906 121 2 37 chr1 180516399 180516837 -62147516 + (GAATG)n Satellite Satellite 1 423 0 785 123 0 25 chr1 180516849 180517011 -62147342 + (GAATG)n Satellite Satellite 2 159 0 897 115 2 24 chr1 180517023 180517440 -62146913 + (GAATG)n Satellite Satellite 1 408 0 1078 94 6 6 chr1 180517456 180517636 -62146717 + (GAATG)n Satellite Satellite 1 180 0 243 61 0 0 chr1 180517655 180517688 -62146665 + (GAATG)n Satellite Satellite 4 36 0 1203 126 1 13 chr1 180517706 180518479 -62145874 + (GAATG)n Satellite Satellite 1 764 0 849 133 0 0 chr1 180518491 180518649 -62145704 + (GAATG)n Satellite Satellite 2 159 0 906 138 0 0 chr1 180518661 180518835 -62145518 + (GAATG)n Satellite Satellite 1 174 0 858 127 0 0 chr1 180518861 180519071 -62145282 + (GAATG)n Satellite Satellite 1 210 0 754 117 0 31 chr1 180519086 180519249 -62145104 + (GAATG)n Satellite Satellite 2 159 0 611 177 6 0 chr1 180519264 180519428 -62144925 + (GAATG)n Satellite Satellite 2 166 0 1113 101 0 0 chr1 180519449 180519628 -62144725 + (GAATG)n Satellite Satellite 2 180 0 1179 99 0 0 chr1 180519643 180519963 -62144390 + (GAATG)n Satellite Satellite 1 320 0 791 142 5 0 chr1 180519980 180520201 -62144152 + (GAATG)n Satellite Satellite 1 222 0 1122 100 2 11 chr1 180520217 180520576 -62143777 + (GAATG)n Satellite Satellite 1 534 0 981 139 3 4 chr1 180520591 180520867 -62143486 + (GAATG)n Satellite Satellite 1 455 0 915 139 0 0 chr1 180520867 180521047 -62143306 + (GAATG)n Satellite Satellite 1 180 0 767 112 5 53 chr1 180521108 180521295 -62143058 + (GAATG)n Satellite Satellite 1 178 0 1017 124 2 4 chr1 180521331 180521830 -62142523 + (GAATG)n Satellite Satellite 1 497 0 938 67 0 77 chr1 180521846 180522041 -62142312 + (GAATG)n Satellite Satellite 1 180 0 1078 104 2 19 chr1 180522060 180522441 -62141912 + (GAATG)n Satellite Satellite 1 551 0 981 128 0 0 chr1 180522441 180522621 -62141732 + (GAATG)n Satellite Satellite 1 180 0 1122 100 0 0 chr1 180522771 180522951 -62141402 + (GAATG)n Satellite Satellite 1 180 0 1101 137 0 0 chr1 180522976 180523316 -62141037 + (GAATG)n Satellite Satellite 1 340 0 1026 134 0 7 chr1 180523336 180524030 -62140323 + (GAATG)n Satellite Satellite 1 688 0 951 127 4 14 chr1 180524045 180524408 -62139945 + (GAATG)n Satellite Satellite 2 536 0 750 169 0 0 chr1 180524424 180524590 -62139763 + (GAATG)n Satellite Satellite 4 169 0 1099 89 6 6 chr1 180524612 180524792 -62139561 + (GAATG)n Satellite Satellite 1 180 0 449 60 0 60 chr1 180524811 180524894 -62139459 + (GAATG)n Satellite Satellite 4 81 0 957 128 0 0 chr1 180524927 180525107 -62139246 + (GAATG)n Satellite Satellite 1 180 0 1200 98 1 7 chr1 180525142 180525681 -62138672 + (GAATG)n Satellite Satellite 3 712 0 863 114 0 24 chr1 180525693 180525860 -62138493 + (GAATG)n Satellite Satellite 2 164 0 757 141 0 27 chr1 180525891 180526076 -62138277 + (GAATG)n Satellite Satellite 1 180 0 798 153 0 0 chr1 180526127 180526304 -62138049 + (GAATG)n Satellite Satellite 2 178 0 1063 81 12 0 chr1 180526319 180526492 -62137861 + (GAATG)n Satellite Satellite 2 176 0 1125 124 3 17 chr1 180526508 180526568 -62137785 + (GAATG)n Satellite Satellite 1 311 0 991 113 3 15 chr1 180526568 180526824 -62137529 + (GAATG)n Satellite Satellite 1 252 0 1125 151 2 2 chr1 180526877 180527476 -62136877 + (GAATG)n Satellite Satellite 1 599 0 996 141 0 0 chr1 180527182 180527668 -62136685 + (GAATG)n Satellite Satellite 1 486 0 1035 124 0 20 chr1 180527681 180528100 -62136253 + (GAATG)n Satellite Satellite 2 581 0 1068 111 0 0 chr1 180528121 180528301 -62136052 + (GAATG)n Satellite Satellite 1 180 0 1068 107 0 36 chr1 180528321 180528695 -62135658 + (GAATG)n Satellite Satellite 1 360 0 889 100 0 53 chr1 180528735 180528925 -62135428 + (GAATG)n Satellite Satellite 1 180 0 939 129 0 0 chr1 180528951 180529129 -62135224 + (GAATG)n Satellite Satellite 2 179 0 446 162 8 0 chr1 180529141 180529258 -62135095 + (GAATG)n Satellite Satellite 2 119 0 1034 111 6 16 chr1 180529273 180529503 -62134850 + (GAATG)n Satellite Satellite 1 402 0 891 119 11 6 chr1 180529503 180529680 -62134673 + (GAATG)n Satellite Satellite 3 180 0 915 127 0 0 chr1 180529817 180529990 -62134363 + (GAATG)n Satellite Satellite 2 174 0 355 174 17 0 chr1 180530002 180530117 -62134236 + (GAATG)n Satellite Satellite 3 119 0 1161 110 0 11 chr1 180530133 180530435 -62133918 + (GAATG)n Satellite Satellite 1 475 0 1161 101 0 0 chr1 180530435 180530614 -62133739 + (GAATG)n Satellite Satellite 1 179 0 1023 107 0 0 chr1 180530683 180530893 -62133460 + (GAATG)n Satellite Satellite 1 210 0 486 211 0 0 chr1 180530908 180531083 -62133270 + (GAATG)n Satellite Satellite 2 176 0 924 141 2 12 chr1 180531105 180531407 -62132946 + (GAATG)n Satellite Satellite 1 477 0 1125 82 0 32 chr1 180531423 180531783 -62132570 + (GAATG)n Satellite Satellite 2 506 0 1200 87 0 15 chr1 180531809 180532082 -62132271 + (GAATG)n Satellite Satellite 2 440 0 849 143 3 40 chr1 180532093 180532429 -62131924 + (GAATG)n Satellite Satellite 1 323 0 1122 107 0 8 chr1 180532445 180532970 -62131383 + (GAATG)n Satellite Satellite 1 699 0 996 128 0 0 chr1 180533001 180533180 -62131173 + (GAATG)n Satellite Satellite 2 180 0 1143 112 2 23 chr1 180533196 180533645 -62130708 + (GAATG)n Satellite Satellite 2 611 0 1120 97 3 17 chr1 180533659 180534019 -62130334 + (GAATG)n Satellite Satellite 1 355 0 891 139 2 0 chr1 180534031 180534507 -62129846 + (GAATG)n Satellite Satellite 1 477 0 1167 102 2 13 chr1 180534522 180534857 -62129496 + (GAATG)n Satellite Satellite 1 509 0 1119 127 2 2 chr1 180534869 180535276 -62129077 + (GAATG)n Satellite Satellite 1 407 0 1044 106 0 0 chr1 180535288 180535467 -62128886 + (GAATG)n Satellite Satellite 1 179 0 723 137 6 22 chr1 180535482 180535664 -62128689 + (GAATG)n Satellite Satellite 2 180 0 939 134 0 0 chr1 180535676 180535855 -62128498 + (GAATG)n Satellite Satellite 1 179 0 366 23 0 0 chr1 180535871 180535914 -62128439 + (GAATG)n Satellite Satellite 2 44 0 905 120 0 27 chr1 180535925 180536109 -62128244 + (GAATG)n Satellite Satellite 2 180 0 1210 98 5 3 chr1 180536155 180536736 -62127617 + (GAATG)n Satellite Satellite 1 763 0 825 110 0 0 chr1 180536751 180536896 -62127457 + (GAATG)n Satellite Satellite 2 146 0 1144 103 5 5 chr1 180536907 180537346 -62127007 + (GAATG)n Satellite Satellite 1 439 0 843 133 0 0 chr1 180537361 180537526 -62126827 + (GAATG)n Satellite Satellite 2 166 0 401 170 9 0 chr1 180537538 180537650 -62126703 + (GAATG)n Satellite Satellite 2 114 0 1146 88 1 26 chr1 180537666 180537985 -62126368 + (GAATG)n Satellite Satellite 1 476 0 1033 94 6 6 chr1 180537985 180538155 -62126198 + (GAATG)n Satellite Satellite 2 171 0 1152 126 1 9 chr1 180538212 180539199 -62125154 + (GAATG)n Satellite Satellite 1 1157 0 1140 126 0 0 chr1 180539214 180539549 -62124804 + (GAATG)n Satellite Satellite 1 335 0 757 120 5 23 chr1 180539564 180539788 -62124565 + (GAATG)n Satellite Satellite 1 219 0 1299 72 0 0 chr1 180539804 180539984 -62124369 + (GAATG)n Satellite Satellite 1 180 0 282 29 0 0 chr1 180540003 180540038 -62124315 + (GAATG)n Satellite Satellite 2 36 0 791 148 0 22 chr1 180540054 180540237 -62124116 + (GAATG)n Satellite Satellite 2 180 0 1126 85 3 3 chr1 180540279 180540627 -62123726 + (GAATG)n Satellite Satellite 1 348 0 760 99 0 56 chr1 180540642 180540804 -62123549 + (GAATG)n Satellite Satellite 4 156 0 1275 95 0 0 chr1 180540832 180541197 -62123156 + (GAATG)n Satellite Satellite 1 365 0 632 165 0 24 chr1 180541216 180541380 -62122973 + (GAATG)n Satellite Satellite 2 161 0 1095 107 0 0 chr1 180541392 180541570 -62122783 + (GAATG)n Satellite Satellite 2 179 0 559 184 3 45 chr1 180541596 180541921 -62122432 + (GAATG)n Satellite Satellite 1 311 0 648 180 0 0 chr1 180541923 180542084 -62122269 + (AATTG)n Simple_repeat Simple_repeat 2 162 0 219 266 0 0 chr1 180542057 180542170 -62122183 + (GATTG)n Simple_repeat Simple_repeat 1 113 0 * 204 297 17 8 chr1 180542194 180542312 -62122041 + (GATTG)n Simple_repeat Simple_repeat 3 121 0 * 214 193 55 61 chr1 180542234 180542415 -62121938 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 * 314 172 0 109 chr1 180542291 180542483 -62121870 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 253 308 116 0 chr1 180642670 180642842 -62021511 + L1MEc LINE L1 752 943 -5453 622 198 19 93 chr1 180642854 180643016 -62021337 + L1M3a LINE L1 13 162 -5793 704 247 5 21 chr1 180643238 180643250 -62021103 + L1M3a LINE L1 2664 2675 -3359 1784 172 17 0 chr1 180643250 180643552 -62020801 - AluSx SINE Alu -5 307 1 704 247 5 21 chr1 180643552 180643733 -62020620 + L1M3a LINE L1 2675 2854 -3180 21 36 0 0 chr1 180644062 180644090 -62020263 + AT_rich Low_complexity Low_complexity 1 28 0 412 372 78 43 chr1 180644527 180644819 -62019534 + L2 LINE L2 2241 2521 -793 2123 104 3 7 chr1 180644819 180645116 -62019237 - AluSg SINE Alu -14 296 1 412 372 78 43 chr1 180645116 180645385 -62018968 + L2 LINE L2 2521 2822 -492 329 351 29 6 chr1 180646330 180646501 -62017852 + MIR SINE MIR 82 256 -6 282 172 0 0 chr1 180646718 180646776 -62017577 + L1MA8 LINE L1 6224 6281 -10 22 0 0 0 chr1 180646896 180646918 -62017435 + AT_rich Low_complexity Low_complexity 1 22 0 272 294 24 12 chr1 180647388 180647473 -62016880 + L2 LINE L2 3224 3309 -4 4464 195 19 11 chr1 180647846 180649313 -62015040 + L1PA16 LINE L1 4683 6164 -2 1065 235 17 13 chr1 180649778 180650012 -62014341 + MER76 LTR ERV 1 235 -453 398 272 183 21 chr1 180650068 180650526 -62013827 - L1MC4 LINE L1 -41 8001 7346 352 256 92 37 chr1 180650543 180650707 -62013646 + MER76 LTR ERV 217 389 -299 536 244 89 12 chr1 180650762 180650930 -62013423 + MER76 LTR ERV 508 688 0 3618 137 86 51 chr1 180651135 180651894 -62012459 - LTR1 LTR ERV1 0 785 1 359 359 0 8 chr1 180652100 180652228 -62012125 - L2 LINE L2 -1 3312 3186 228 211 0 0 chr1 180652761 180652837 -62011516 + (TA)n Simple_repeat Simple_repeat 2 77 0 407 136 25 144 chr1 180652838 180652956 -62011397 + MER76 LTR ERV 585 688 0 373 301 0 10 chr1 180653154 180653257 -62011096 - MIR SINE MIR -52 210 109 180 25 0 75 chr1 180653296 180653336 -62011017 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr1 180654202 180654230 -62010123 + AT_rich Low_complexity Low_complexity 1 28 0 4289 205 37 30 chr1 180654565 180656031 -62008322 - L1MA6 LINE L1 -6 6996 5535 4127 241 49 12 chr1 180656045 180657571 -62006782 - L1MA6 LINE L1 -2648 4200 2620 492 18 0 0 chr1 180657778 180657835 -62006518 + (TG)n Simple_repeat Simple_repeat 2 58 0 490 292 12 0 chr1 180657837 180657998 -62006355 - L1 LINE L1 -3327 3521 3359 5049 146 4 0 chr1 180658006 180658817 -62005536 + L1PB2 LINE L1 5335 6148 -3 200 35 35 0 chr1 180658843 180658872 -62005481 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 582 194 48 0 chr1 180658872 180658996 -62005357 - L1MA6 LINE L1 -4421 2428 2299 1815 233 50 2 chr1 180659034 180659472 -62004881 - L1 LINE L1 -4167 2682 2224 486 307 36 18 chr1 180659486 180659652 -62004701 - L1 LINE L1 -5284 1565 1397 230 392 0 0 chr1 180661254 180661356 -62002997 - L2 LINE L2 -276 3037 2936 2480 50 0 25 chr1 180661360 180661679 -62002674 + AluY SINE Alu 1 311 0 21 0 0 0 chr1 180662527 180662548 -62001805 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 180662704 180662732 -62001621 + AT_rich Low_complexity Low_complexity 1 28 0 2766 39 0 0 chr1 180662732 180663063 -62001290 - L1PA7 LINE L1 -8 6146 5816 3454 58 7 2 chr1 180663063 180663508 -62000845 + L1PA7 LINE L1 5368 5814 -340 2367 64 3 0 chr1 180664064 180664360 -61999993 + AluY SINE Alu 2 298 -13 24 0 0 0 chr1 180664590 180664614 -61999739 + AT_rich Low_complexity Low_complexity 1 24 0 419 212 0 124 chr1 180665116 180665253 -61999100 + AluJb SINE Alu 70 189 -113 234 353 125 0 chr1 180665337 180665473 -61998880 + MIR SINE MIR 48 200 -62 1221 227 32 0 chr1 180665678 180665925 -61998428 + AluJb SINE Alu 22 276 -36 483 211 11 0 chr1 180665925 180666015 -61998338 - AluJo SINE Alu -86 226 136 588 241 0 15 chr1 180666017 180666150 -61998203 - AluJo SINE Alu -171 131 1 679 0 0 34 chr1 180666158 180666247 -61998106 + (TTTTA)n Simple_repeat Simple_repeat 1 86 0 1649 161 0 4 chr1 180666247 180666514 -61997839 - L1PA15 LINE L1 -26 6139 5874 383 289 0 66 chr1 180666505 180666671 -61997682 + L1MEc LINE L1 1512 1666 -4730 * 2240 40 1 15 chr1 180666685 180666975 -61997378 + L1HS LINE L1 5869 6155 0 5250 259 35 12 chr1 180667129 180669567 -61994786 + L1MB7 LINE L1 3340 5834 -350 8663 211 48 52 chr1 180670223 180672124 -61992229 - L1MC3 LINE L1 -11 7774 5884 2104 196 22 70 chr1 180672124 180672706 -61991647 - MLT2B3 LTR ERVL 0 554 1 8663 211 48 52 chr1 180672706 180673204 -61991149 - L1MC3 LINE L1 -1901 5884 5385 2109 79 7 34 chr1 180673205 180673526 -61990827 + AluY SINE Alu 1 313 0 249 83 0 0 chr1 180673550 180673586 -61990767 + (TG)n Simple_repeat Simple_repeat 1 36 0 10548 138 22 7 chr1 180673633 180675322 -61989031 + L1PA15 LINE L1 1808 3530 -2616 320 43 0 21 chr1 180675322 180675369 -61988984 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 10548 138 22 7 chr1 180675369 180675520 -61988833 + L1PA15 LINE L1 3530 3677 -2469 2086 146 17 9 chr1 180675506 180675856 -61988497 + L1PA15 LINE L1 5505 5857 -308 * 819 93 0 0 chr1 180675959 180676077 -61988276 + L1PA15 LINE L1 6041 6158 -7 257 270 0 0 chr1 180676438 180676512 -61987841 - MLT1K LTR MaLR -4 584 511 279 93 0 0 chr1 180676604 180676647 -61987706 + (TC)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr1 180676768 180676797 -61987556 + AT_rich Low_complexity Low_complexity 1 29 0 229 192 39 0 chr1 180676985 180677037 -61987316 - MLT1L LTR MaLR -543 72 19 470 109 0 0 chr1 180678101 180678165 -61986188 - THE1C LTR MaLR 0 375 312 356 259 123 68 chr1 180679584 180679893 -61984460 - L1M4 LINE L1 -2659 3487 3162 314 345 78 21 chr1 180680654 180680796 -61983557 - L1ME LINE L1 -5890 180 31 27 0 0 0 chr1 180682298 180682325 -61982028 + AT_rich Low_complexity Low_complexity 1 27 0 326 339 51 0 chr1 180682382 180682500 -61981853 + MLT1I LTR MaLR 1 124 -285 223 360 11 0 chr1 180684264 180684353 -61980000 + L2 LINE L2 1871 1960 -1354 620 271 105 66 chr1 180684796 180685368 -61978985 - Charlie7 DNA MER1_type -532 2080 1487 225 0 0 0 chr1 180685686 180685711 -61978642 + (TG)n Simple_repeat Simple_repeat 2 26 0 319 293 0 0 chr1 180685711 180685793 -61978560 + L1MC4 LINE L1 6614 6695 -1347 * 330 302 0 0 chr1 180685725 180685811 -61978542 - L1MC4 LINE L1 -1339 6703 6618 231 36 0 0 chr1 180685950 180685978 -61978375 + (TA)n Simple_repeat Simple_repeat 2 29 0 23 33 0 0 chr1 180686705 180686735 -61977618 + AT_rich Low_complexity Low_complexity 1 30 0 247 165 31 21 chr1 180687206 180687303 -61977050 + (TA)n Simple_repeat Simple_repeat 1 98 0 319 189 45 15 chr1 180687367 180687499 -61976854 + (TA)n Simple_repeat Simple_repeat 2 137 0 26 30 0 0 chr1 180688605 180688638 -61975715 + AT_rich Low_complexity Low_complexity 1 33 0 454 311 168 14 chr1 180688722 180689150 -61975203 - MLT1G LTR MaLR -41 549 79 192 333 69 0 chr1 180689333 180689405 -61974948 - MIR3 SINE MIR -54 154 78 27 0 0 0 chr1 180689580 180689607 -61974746 + AT_rich Low_complexity Low_complexity 1 27 0 2687 3 3 0 chr1 180690956 180691254 -61973099 + AluYa5 SINE Alu 1 299 -12 1669 151 4 0 chr1 180691462 180691733 -61972620 + AluSg SINE Alu 1 272 -38 312 155 14 0 chr1 180691987 180692058 -61972295 + L1PA15 LINE L1 6092 6163 -2 6639 222 28 18 chr1 180692059 180694143 -61970210 + L1MC3 LINE L1 5318 7597 -188 31 58 0 0 chr1 180694373 180694425 -61969928 + AT_rich Low_complexity Low_complexity 1 52 0 34 65 0 0 chr1 180696946 180697008 -61967345 + AT_rich Low_complexity Low_complexity 1 62 0 2409 165 26 56 chr1 180697022 180697503 -61966850 - L1MA6 LINE L1 0 6300 5835 1547 173 7 33 chr1 180697503 180697804 -61966549 - AluSx SINE Alu -17 295 3 2409 165 26 56 chr1 180697804 180697861 -61966492 - L1MA6 LINE L1 -465 5835 5778 1255 179 81 0 chr1 180697879 180698152 -61966201 + AluSx SINE Alu 15 309 -3 2264 189 33 20 chr1 180698171 180698889 -61965464 - L1MA6 LINE L1 -532 5768 5044 292 212 15 0 chr1 180698949 180699015 -61965338 + MER58 DNA MER1_type 2350 2416 -4 1001 43 0 0 chr1 180699866 180700019 -61964334 + L1PA3 LINE L1 6015 6167 0 25 0 0 0 chr1 180700419 180700444 -61963909 + AT_rich Low_complexity Low_complexity 1 25 0 379 128 23 0 chr1 180700966 180701052 -61963301 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 291 161 0 0 chr1 180702340 180702396 -61961957 + GA-rich Low_complexity Low_complexity 4 59 0 981 338 46 58 chr1 180703184 180703832 -61960521 - L1M2b LINE L1 -6156 1053 315 9550 64 8 80 chr1 180703832 180705296 -61959057 + SVA Other Other 29 1386 0 981 338 46 58 chr1 180705296 180705392 -61958961 - L1M2b LINE L1 -6894 315 219 266 199 139 80 chr1 180705890 180705906 -61958447 - L1P5 LINE L1 -300 5854 5839 432 210 84 72 chr1 180705906 180706073 -61958280 - L1MA6 LINE L1 -469 5831 5663 1521 184 11 31 chr1 180706112 180706465 -61957888 + L1MA8 LINE L1 5813 6158 -133 4437 65 2 2 chr1 180706474 180707046 -61957307 - L1PA5 LINE L1 -2 6152 5581 2893 107 23 7 chr1 180707046 180707551 -61956802 + L1MA8 LINE L1 4047 6290 -1 189 0 0 0 chr1 180708341 180708362 -61955991 + (CAA)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr1 180708589 180708624 -61955729 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 180708947 180708970 -61955383 + AT_rich Low_complexity Low_complexity 1 23 0 412 154 13 39 chr1 180709187 180709265 -61955088 - MSTB1 LTR MaLR -11 421 346 201 39 0 0 chr1 180709277 180709303 -61955050 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1434 149 112 0 chr1 180709305 180709554 -61954799 - AluSx SINE Alu -32 280 4 1426 226 108 9 chr1 180709557 180709880 -61954473 - MSTB1 LTR MaLR -73 359 5 2117 135 7 0 chr1 180710476 180710779 -61953574 + AluSx SINE Alu 4 308 -4 26 64 0 0 chr1 180711027 180711074 -61953279 + AT_rich Low_complexity Low_complexity 1 47 0 31 0 0 0 chr1 180713058 180713089 -61951264 + AT_rich Low_complexity Low_complexity 1 31 0 1844 157 3 0 chr1 180713666 180713960 -61950393 - AluSx SINE Alu -17 295 1 612 145 8 40 chr1 180714198 180714322 -61950031 - L1MA9 LINE L1 -116 6196 6077 389 250 11 0 chr1 180715034 180715126 -61949227 + MLT1E3 LTR MaLR 70 162 -462 457 302 17 17 chr1 180715550 180715729 -61948624 - MER3 DNA MER1_type -2 207 29 1945 123 0 14 chr1 180715931 180716216 -61948137 + AluSx SINE Alu 1 281 -31 1360 41 0 0 chr1 180716216 180716385 -61947968 - L1PA4 LINE L1 0 6155 5987 241 250 59 44 chr1 180717134 180717270 -61947083 + MLT1L LTR MaLR 477 614 -1 1446 166 56 10 chr1 180717517 180717819 -61946534 - L1MA4 LINE L1 -2 6298 5983 25 0 0 0 chr1 180717853 180717878 -61946475 + AT_rich Low_complexity Low_complexity 1 25 0 204 319 62 26 chr1 180719109 180719222 -61945131 + L2 LINE L2 3196 3312 -1 24 0 0 0 chr1 180719836 180719860 -61944493 + AT_rich Low_complexity Low_complexity 1 24 0 29 90 0 0 chr1 180720530 180720608 -61943745 + AT_rich Low_complexity Low_complexity 1 78 0 31 0 0 0 chr1 180721407 180721438 -61942915 + AT_rich Low_complexity Low_complexity 1 31 0 4707 147 54 21 chr1 180722430 180723304 -61941049 - MER4D LTR ERV1 0 903 1 210 320 13 0 chr1 180723718 180723793 -61940560 + CT-rich Low_complexity Low_complexity 3 78 0 279 93 0 0 chr1 180725091 180725134 -61939219 + (GA)n Simple_repeat Simple_repeat 1 43 0 3397 153 36 2 chr1 180725431 180726008 -61938345 + LTR38B LTR ERV1 1 597 -13 7606 182 9 31 chr1 180726052 180728543 -61935810 + L1PA8A LINE L1 3 2504 -3957 226 213 0 0 chr1 180728544 180728591 -61935762 - Alu SINE Alu -74 229 183 * 367 200 0 0 chr1 180728588 180728653 -61935700 + Alu SINE Alu 235 299 -2 264 149 0 0 chr1 180728653 180728700 -61935653 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 889 225 53 4 chr1 180728700 180728927 -61935426 - L1M4 LINE L1 -1053 5093 4856 13878 120 11 5 chr1 180728930 180732873 -61931480 + L1PA8A LINE L1 2491 6445 -1 36 23 0 0 chr1 180732967 180733010 -61931343 + AT_rich Low_complexity Low_complexity 1 43 0 192 40 0 0 chr1 180733402 180733427 -61930926 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 27 49 0 0 chr1 180734020 180734061 -61930292 + AT_rich Low_complexity Low_complexity 1 41 0 492 228 85 80 chr1 180734413 180734973 -61929380 - L1MC4 LINE L1 -323 7462 6906 1052 133 0 6 chr1 180734973 180735154 -61929199 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 492 228 85 80 chr1 180735154 180735856 -61928497 - L1MC4 LINE L1 -879 6906 6245 * 973 230 20 47 chr1 180735848 180736160 -61928193 - L1MC3 LINE L1 -309 5855 5553 2018 125 0 20 chr1 180737312 180737615 -61926738 + AluSq SINE Alu 1 297 -16 26 0 0 0 chr1 180737941 180737967 -61926386 + AT_rich Low_complexity Low_complexity 1 26 0 2403 59 0 0 chr1 180738488 180738777 -61925576 - AluY SINE Alu -11 300 12 244 257 120 27 chr1 180738898 180739081 -61925272 + L1MB7 LINE L1 5969 6168 -16 1341 292 99 22 chr1 180739864 180740398 -61923955 + MLT1E2 LTR MaLR 52 626 0 222 37 0 0 chr1 180740663 180740690 -61923663 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 408 123 68 0 chr1 180740690 180740763 -61923590 - L1PA16 LINE L1 -8 6158 6081 1733 176 14 78 chr1 180740990 180741143 -61923210 + MER1B DNA MER1_type 1 162 -2550 1524 209 3 3 chr1 180741143 180741454 -61922899 + AluJb SINE Alu 1 311 -1 1733 176 14 78 chr1 180741454 180741659 -61922694 + MER1B DNA MER1_type 162 336 -3 378 318 85 0 chr1 180743294 180743470 -61920883 - MIR SINE MIR -52 210 20 70 54 0 0 chr1 180743598 180743710 -61920643 + AT_rich Low_complexity Low_complexity 1 112 0 22 56 0 0 chr1 180744002 180744038 -61920315 + AT_rich Low_complexity Low_complexity 1 36 0 221 333 71 66 chr1 180744559 180744757 -61919596 + MIR SINE MIR 8 206 -56 21 71 0 0 chr1 180745486 180745528 -61918825 + AT_rich Low_complexity Low_complexity 1 42 0 32 0 0 43 chr1 180745593 180745616 -61918737 + AT_rich Low_complexity Low_complexity 1 23 -22 2132 91 0 0 chr1 180745616 180745892 -61918461 - AluSc SINE Alu -8 301 26 32 0 0 43 chr1 180745892 180745915 -61918438 + AT_rich Low_complexity Low_complexity 23 45 0 1027 256 32 35 chr1 180745931 180746278 -61918075 - L1MC3 LINE L1 -270 7515 7170 251 216 0 0 chr1 180746280 180746331 -61918022 - MLT1F1 LTR MaLR -456 111 61 24 32 0 0 chr1 180746363 180746394 -61917959 + AT_rich Low_complexity Low_complexity 1 31 0 731 309 42 3 chr1 180746410 180746795 -61917558 - L1M4 LINE L1 -2155 3991 3592 198 0 0 0 chr1 180746797 180746819 -61917534 + (T)n Simple_repeat Simple_repeat 1 22 0 423 188 0 0 chr1 180746840 180746920 -61917433 - L1PA15 LINE L1 -221 5944 5865 8182 237 28 46 chr1 180746976 180750147 -61914206 - L1 LINE L1 -1270 4876 1763 21 0 0 0 chr1 180750223 180750244 -61914109 + AT_rich Low_complexity Low_complexity 1 21 0 1935 59 0 0 chr1 180750374 180750612 -61913741 + AluY SINE Alu 69 306 -5 1696 229 71 34 chr1 180751870 180752393 -61911960 + MER67A LTR ERV1 2 543 0 206 61 0 30 chr1 180753860 180753893 -61910460 + (CA)n Simple_repeat Simple_repeat 1 32 0 1169 248 71 28 chr1 180753914 180754407 -61909946 - L1M4 LINE L1 -3113 3033 2520 2138 128 0 0 chr1 180754439 180754751 -61909602 + AluSx SINE Alu 1 312 0 274 252 100 135 chr1 180754756 180754941 -61909412 + MLT1C LTR MaLR 21 174 -293 1959 124 0 6 chr1 180754941 180755255 -61909098 + AluSq SINE Alu 1 312 -1 274 252 100 135 chr1 180755255 180755410 -61908943 + MLT1C LTR MaLR 174 333 -134 961 215 35 4 chr1 180755419 180755744 -61908609 - L1MC/D LINE L1 -743 5403 5186 22 0 0 0 chr1 180756366 180756388 -61907965 + AT_rich Low_complexity Low_complexity 1 22 0 39 0 0 0 chr1 180757792 180757831 -61906522 + AT_rich Low_complexity Low_complexity 1 39 0 338 260 120 75 chr1 180758565 180758765 -61905588 + MIR SINE MIR 51 259 -3 456 190 0 91 chr1 180759081 180759181 -61905172 + MLT1A2 LTR MaLR 1 89 -285 236 91 0 0 chr1 180759181 180759214 -61905139 + MLT2B3 LTR ERVL 1 33 -521 * 693 223 23 0 chr1 180759213 180759343 -61905010 + MLT2B3 LTR ERVL 357 489 -65 1297 200 28 38 chr1 180759356 180759646 -61904707 + MLT1A2 LTR MaLR 88 374 0 430 329 116 57 chr1 180759828 180760760 -61903593 - L2 LINE L2 -5 3308 2298 1712 148 50 17 chr1 180761337 180761634 -61902719 - AluSx SINE Alu -5 307 1 1478 299 62 46 chr1 180762088 180762237 -61902116 + L1MDb LINE L1 198 343 -6200 1806 164 57 28 chr1 180762237 180762591 -61901762 - THE1B LTR MaLR 0 364 1 10736 104 21 15 chr1 180762591 180764162 -61900191 - THE1B-int LTR MaLR 0 1580 1 1655 158 79 53 chr1 180764162 180764517 -61899836 - THE1B LTR MaLR 0 364 1 1478 299 62 46 chr1 180764517 180764994 -61899359 + L1MDb LINE L1 342 785 -5758 3066 106 56 2 chr1 180764996 180765458 -61898895 - LTR15 LTR ERV1 -6 487 1 1985 251 44 63 chr1 180765462 180766148 -61898205 + L1MDb LINE L1 613 1285 -5258 551 225 63 9 chr1 180766174 180766332 -61898021 + L1MDb LINE L1 1822 1976 -4564 4950 190 45 44 chr1 180766338 180768031 -61896322 - L1PA16 LINE L1 0 7604 5910 2100 151 40 31 chr1 180768031 180768455 -61895898 + MSTA LTR MaLR 1 428 0 4950 190 45 44 chr1 180768455 180769143 -61895210 - L1PA16 LINE L1 -1694 5910 5225 2958 261 25 19 chr1 180769162 180770355 -61893998 - L1PA16 LINE L1 -4190 3394 2182 828 338 39 44 chr1 180770860 180771446 -61892907 - L1PA16 LINE L1 -6203 1371 789 620 295 97 4 chr1 180771446 180772123 -61892230 + L1MDb LINE L1 1969 2734 -3806 2944 217 60 27 chr1 180772123 180772795 -61891558 - MER44D DNA MER2_type 0 705 12 3013 273 50 25 chr1 180772796 180774286 -61890067 + L1MDb LINE L1 2727 4254 -2286 465 216 54 98 chr1 180774289 180774493 -61889860 - MLT1D LTR MaLR -294 211 17 432 270 40 0 chr1 180774542 180774690 -61889663 + L1MDb LINE L1 4275 4428 -2112 1271 284 59 57 chr1 180774777 180775904 -61888449 + L1MDb LINE L1 4420 5548 -992 192 40 0 0 chr1 180775909 180775934 -61888419 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 783 196 22 0 chr1 180775977 180776115 -61888238 + AluJo SINE Alu 3 143 -169 1956 134 32 91 chr1 180776120 180776591 -61887762 + L1MA2 LINE L1 5862 6304 0 21 0 0 0 chr1 180777057 180777078 -61887275 + AT_rich Low_complexity Low_complexity 1 21 0 202 146 0 24 chr1 180777782 180777823 -61886530 + (TAAAAA)n Simple_repeat Simple_repeat 4 43 0 2109 109 0 0 chr1 180779025 180779344 -61885009 - AluSx SINE Alu 0 319 1 1337 248 100 18 chr1 180779448 180779888 -61884465 + MER90 LTR ERV1 1 476 -99 204 239 0 15 chr1 180780946 180781013 -61883340 + A-rich Low_complexity Low_complexity 3 68 0 26 0 0 0 chr1 180782475 180782501 -61881852 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr1 180782800 180782828 -61881525 + AT_rich Low_complexity Low_complexity 1 28 0 538 314 101 11 chr1 180783157 180783345 -61881008 - MER63A DNA MER1_type 0 210 6 752 328 65 30 chr1 180783356 180784008 -61880345 + ERVL LTR ERVL 4278 5011 -516 182 333 0 0 chr1 180784143 180784200 -61880153 - MIR SINE MIR -131 131 75 284 280 116 34 chr1 180785573 180785780 -61878573 - MIR SINE MIR -2 260 37 511 125 0 0 chr1 180786758 180786838 -61877515 + L1PA7 LINE L1 6072 6151 -3 1194 244 67 51 chr1 180787033 180787464 -61876889 + MLT1D LTR MaLR 60 497 -8 828 212 31 44 chr1 180788182 180788531 -61875822 - MLT1D LTR MaLR -106 399 7 212 323 104 21 chr1 180788581 180788677 -61875676 + L2 LINE L2 3210 3313 0 1100 211 4 4 chr1 180788860 180789088 -61875265 - AluJo SINE Alu -7 305 78 25 31 0 0 chr1 180790518 180790550 -61873803 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 180790806 180790829 -61873524 + AT_rich Low_complexity Low_complexity 1 23 0 1277 219 89 9 chr1 180790932 180791270 -61873083 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr1 180791982 180792003 -61872350 + AT_rich Low_complexity Low_complexity 1 21 0 55 62 0 0 chr1 180792439 180792536 -61871817 + AT_rich Low_complexity Low_complexity 1 97 0 592 360 126 36 chr1 180792645 180792997 -61871356 + L2 LINE L2 954 1273 -2041 2575 95 5 0 chr1 180792997 180793366 -61870987 - L1PA13 LINE L1 -4 6159 5789 592 360 126 36 chr1 180793366 180793688 -61870665 + L2 LINE L2 1273 1689 -1625 863 291 210 28 chr1 180793693 180794373 -61869980 + L2 LINE L2 1869 2672 -642 28 29 0 0 chr1 180794380 180794415 -61869938 + AT_rich Low_complexity Low_complexity 1 35 0 231 311 106 0 chr1 180795253 180795385 -61868968 + MIR SINE MIR 115 260 -2 967 303 96 57 chr1 180796052 180796699 -61867654 - L1ME3A LINE L1 -6 6164 5493 1451 228 14 35 chr1 180796704 180796779 -61867574 + MLT1A1 LTR MaLR 1 76 -289 906 78 78 0 chr1 180796779 180796908 -61867445 - MER85 DNA T2_type 0 139 1 1451 228 14 35 chr1 180796908 180797178 -61867175 + MLT1A1 LTR MaLR 76 339 -26 26 50 0 0 chr1 180797180 180797220 -61867133 + AT_rich Low_complexity Low_complexity 1 40 0 459 206 83 64 chr1 180797238 180797481 -61866872 - L1ME3A LINE L1 -678 5500 5254 225 224 0 0 chr1 180797491 180797558 -61866795 + L1MC4 LINE L1 6637 6703 -1339 * 269 316 25 49 chr1 180797551 180797795 -61866558 - L1ME3A LINE L1 -901 5245 5008 22 80 0 0 chr1 180797817 180797867 -61866486 + AT_rich Low_complexity Low_complexity 1 50 0 333 243 70 43 chr1 180798027 180798212 -61866141 - L1ME3A LINE L1 -1318 4828 4639 23 54 0 0 chr1 180798237 180798274 -61866079 + AT_rich Low_complexity Low_complexity 1 37 0 6548 190 23 23 chr1 180798276 180800559 -61863794 - L1MA4 LINE L1 -1 6179 3871 495 220 27 4 chr1 180800549 180800794 -61863559 - L1MA4 LINE L1 -2875 3271 2922 * 22 88 0 0 chr1 180801877 180801934 -61862419 + AT_rich Low_complexity Low_complexity 1 57 0 294 240 227 0 chr1 180803784 180803859 -61860494 - Tigger7 DNA MER2_type 0 2487 2396 * 2395 209 59 2 chr1 180803858 180804351 -61860002 - Tigger7 DNA MER2_type -212 521 1 591 300 96 68 chr1 180805409 180806142 -61858211 + HAL1 LINE L1 290 1042 -1465 1197 191 30 30 chr1 180806193 180806496 -61857857 - L1MA7 LINE L1 -64 6227 5925 448 119 36 0 chr1 180806496 180806565 -61857788 + L1MA7 LINE L1 6202 6288 -3 480 311 83 14 chr1 180806640 180806917 -61857436 + HAL1 LINE L1 1487 1782 -725 266 191 0 15 chr1 180807572 180807640 -61856713 + CT-rich Low_complexity Low_complexity 3 69 0 354 325 46 52 chr1 180807823 180808149 -61856204 - L1ME LINE L1 -519 5651 5328 3269 195 21 20 chr1 180808333 180808966 -61855387 + MER67C LTR ERV1 1 637 -73 2012 137 3 0 chr1 180808966 180809265 -61855088 - AluSg SINE Alu -10 300 1 3269 195 21 20 chr1 180809265 180809340 -61855013 + MER67C LTR ERV1 637 710 0 1066 272 89 22 chr1 180809621 180809724 -61854629 - L1ME2 LINE L1 -14 6150 6055 606 241 25 76 chr1 180809724 180809960 -61854393 + MER58A DNA MER1_type 1 224 0 1066 272 89 22 chr1 180809960 180810495 -61853858 - L1ME2 LINE L1 -109 6055 5469 305 352 30 25 chr1 180810560 180810759 -61853594 - L1MDa LINE L1 -3892 2752 2553 507 308 161 45 chr1 180810966 180812067 -61852286 + L1MEc LINE L1 856 2084 -4312 1647 102 0 5 chr1 180813279 180813495 -61850858 - AluSg SINE Alu -94 216 2 30 0 0 0 chr1 180813636 180813666 -61850687 + AT_rich Low_complexity Low_complexity 1 30 0 243 231 104 37 chr1 180814988 180815122 -61849231 + L1M4 LINE L1 4477 4619 -1527 412 313 104 26 chr1 180816257 180816641 -61847712 + L1MEc LINE L1 18 431 -5965 349 365 60 58 chr1 180816719 180817154 -61847199 + L1MEc LINE L1 499 934 -5462 233 301 19 29 chr1 180817165 180817268 -61847085 + L1MEc LINE L1 1273 1374 -5022 1874 141 55 100 chr1 180817925 180818470 -61845883 - MLT2A2 LTR ERVL -10 544 1 429 296 154 22 chr1 180818616 180818927 -61845426 - HAL1 LINE L1 -1036 1471 1120 508 193 19 19 chr1 180819749 180819910 -61844443 + CT-rich Low_complexity Low_complexity 1 161 0 211 331 70 49 chr1 180821775 180821917 -61842436 - MIR3 SINE MIR -42 166 22 1965 85 96 0 chr1 180822241 180822511 -61841842 + AluY SINE Alu 6 301 -10 180 77 0 0 chr1 180822970 180822996 -61841357 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 1620 181 49 22 chr1 180822998 180823363 -61840990 - THE1C LTR MaLR 0 375 1 323 231 13 7 chr1 180823456 180823617 -61840736 + CT-rich Low_complexity Low_complexity 1 162 0 3164 203 42 38 chr1 180823617 180824501 -61839852 - L1MCb LINE L1 -5017 1627 533 767 272 28 64 chr1 180824546 180824873 -61839480 - L1MCb LINE L1 -5897 645 331 2343 155 60 58 chr1 180824966 180825462 -61838891 + LOR1a LTR ERV1 1 497 0 21 71 0 0 chr1 180825697 180825739 -61838614 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr1 180825876 180825905 -61838448 + AT_rich Low_complexity Low_complexity 1 29 0 2258 78 0 3 chr1 180826613 180826921 -61837432 + AluY SINE Alu 1 307 0 3936 146 68 10 chr1 180829670 180830402 -61833951 - LTR1 LTR ERV1 0 785 11 1589 106 8 12 chr1 180831084 180831330 -61833023 - L1PA10 LINE L1 -3 6165 5921 7345 43 1 14 chr1 180831486 180833139 -61831214 + L1PA5 LINE L1 4518 6148 -6 459 281 63 12 chr1 180833706 180833959 -61830394 - L1M4 LINE L1 -2875 3271 3006 275 154 19 0 chr1 180833966 180834018 -61830335 + MLT1A1 LTR MaLR 1 53 -312 2701 244 31 19 chr1 180834192 180834975 -61829378 - L1MB8 LINE L1 -2 6176 5385 881 219 51 14 chr1 180834982 180835159 -61829194 - AluJo SINE Alu 0 312 124 221 0 0 33 chr1 180835159 180835189 -61829164 + (TTG)n Simple_repeat Simple_repeat 2 30 0 881 219 51 14 chr1 180835189 180835226 -61829127 - AluJo SINE Alu -188 124 90 389 196 49 10 chr1 180835237 180835339 -61829014 - L1MA9 LINE L1 -179 6133 6028 2112 181 38 26 chr1 180835354 180835631 -61828722 - L1MA4A LINE L1 -7 6882 6595 216 0 0 0 chr1 180835631 180835655 -61828698 + (CCA)n Simple_repeat Simple_repeat 1 24 0 2112 181 38 26 chr1 180835655 180835879 -61828474 - L1MA4A LINE L1 -294 6595 6375 322 178 58 23 chr1 180835888 180836062 -61828291 + (TA)n Simple_repeat Simple_repeat 1 180 0 339 247 16 48 chr1 180836081 180836267 -61828086 + (TA)n Simple_repeat Simple_repeat 1 180 0 485 214 0 0 chr1 180836281 180836379 -61827974 - L1MA4A LINE L1 -512 6377 6280 * 2892 204 25 108 chr1 180836377 180837178 -61827175 - L1MA4A LINE L1 -714 6040 5385 1994 139 41 25 chr1 180837178 180837545 -61826808 + THE1C LTR MaLR 1 373 -2 2892 204 25 108 chr1 180837545 180838028 -61826325 - L1MA4A LINE L1 -1369 5385 4863 1873 213 104 27 chr1 180838033 180838727 -61825626 - L1MA4A LINE L1 -2462 4270 3524 431 318 17 20 chr1 180838730 180838959 -61825394 - L1MA4A LINE L1 -5203 1450 592 2582 318 26 27 chr1 180839063 180840050 -61824303 - L1M4b LINE L1 -5828 1031 46 222 304 33 11 chr1 180840185 180840277 -61824076 + MIR SINE MIR 156 249 -13 28 61 0 0 chr1 180840954 180841003 -61823350 + AT_rich Low_complexity Low_complexity 1 49 0 2113 241 52 14 chr1 180841003 180841558 -61822795 + MER70B LTR ERVL 1 576 -2 1274 158 5 5 chr1 180841827 180842029 -61822324 - MER1B DNA MER1_type 0 339 138 530 84 0 0 chr1 180842029 180842100 -61822253 + Alu SINE Alu 227 297 -13 776 203 0 0 chr1 180842100 180842243 -61822110 - MER1B DNA MER1_type -151 146 4 23 54 0 0 chr1 180843358 180843395 -61820958 + AT_rich Low_complexity Low_complexity 1 37 0 3514 70 2 0 chr1 180843623 180844077 -61820276 + L1PA7 LINE L1 5524 5978 -194 28 71 0 0 chr1 180844344 180844400 -61819953 + AT_rich Low_complexity Low_complexity 1 56 0 551 141 66 8 chr1 180844407 180844528 -61819825 - L1MA8 LINE L1 -6 6285 6158 1280 92 0 0 chr1 180844761 180844935 -61819418 + L1PA7 LINE L1 5974 6147 -7 546 273 33 55 chr1 180844996 180845267 -61819086 + Zaphod DNA AcHobo 3767 4031 0 230 304 54 11 chr1 180845590 180845682 -61818671 - MIR SINE MIR -159 103 8 21 0 0 0 chr1 180846724 180846745 -61817608 + AT_rich Low_complexity Low_complexity 1 21 0 317 172 16 0 chr1 180847213 180847277 -61817076 + AluJb SINE Alu 58 122 -180 327 247 21 11 chr1 180847593 180847686 -61816667 + MER70B LTR ERVL 459 552 -26 308 327 62 31 chr1 180847688 180847850 -61816503 - L2 LINE L2 -1386 1928 1762 2108 117 3 0 chr1 180848285 180848594 -61815759 + AluSx SINE Alu 1 310 -2 2411 60 0 3 chr1 180848814 180849116 -61815237 + AluY SINE Alu 9 309 -2 395 304 54 14 chr1 180849147 180849295 -61815058 - L2 LINE L2 -942 2372 2219 2608 27 0 3 chr1 180849549 180849848 -61814505 - AluY SINE Alu -13 298 1 314 130 19 0 chr1 180849943 180849997 -61814356 + MADE1 DNA Mariner 5 59 -21 911 24 24 8 chr1 180849998 180850125 -61814228 + (TCTA)n Simple_repeat Simple_repeat 4 132 0 2903 6 0 0 chr1 180851255 180851573 -61812780 - AluYb8 SINE Alu 0 318 1 219 293 131 47 chr1 180852842 180853082 -61811271 + L2 LINE L2 2568 2899 -415 535 288 6 38 chr1 180853242 180853402 -61810951 + L2 LINE L2 3159 3313 0 219 173 0 0 chr1 180853682 180853734 -61810619 + CT-rich Low_complexity Low_complexity 2 53 0 627 282 109 58 chr1 180854054 180854402 -61809951 + MLT1F LTR MaLR 3 368 -174 34 42 0 0 chr1 180854662 180854710 -61809643 + AT_rich Low_complexity Low_complexity 1 48 0 1174 274 28 8 chr1 180854804 180855266 -61809087 - MER82 DNA MER2_type -11 642 96 1531 286 80 16 chr1 180856195 180856744 -61807609 + MLT1E LTR MaLR 1 584 -9 314 23 23 0 chr1 180857044 180857087 -61807266 + (TA)n Simple_repeat Simple_repeat 1 44 0 5501 38 0 0 chr1 180857087 180857739 -61806614 - L1PA5 LINE L1 -16 6138 5487 4352 49 11 0 chr1 180857739 180858387 -61805966 + L1PA5 LINE L1 4828 5479 -675 21 95 0 0 chr1 180858509 180858572 -61805781 + AT_rich Low_complexity Low_complexity 1 63 0 353 332 95 17 chr1 180858903 180859144 -61805209 + MIR SINE MIR 3 262 0 1709 141 11 0 chr1 180859286 180859549 -61804804 + AluSx SINE Alu 38 303 -9 21 0 0 0 chr1 180860318 180860339 -61804014 + AT_rich Low_complexity Low_complexity 1 21 0 339 85 0 0 chr1 180860550 180860597 -61803756 + (CA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr1 180861240 180861265 -61803088 + AT_rich Low_complexity Low_complexity 1 25 0 236 263 25 0 chr1 180861869 180861949 -61802404 - L1M4c LINE L1 -4859 1525 1444 1045 165 0 18 chr1 180862211 180862381 -61801972 - AluJ SINE Alu -16 296 130 216 102 41 41 chr1 180862386 180862435 -61801918 + CT-rich Low_complexity Low_complexity 1 49 0 1910 180 0 0 chr1 180862435 180862746 -61801607 - AluSx SINE Alu -1 311 1 682 213 0 22 chr1 180862761 180862897 -61801456 - AluJ SINE Alu -169 133 1 7359 36 0 0 chr1 180863086 180864060 -61800293 - L1PA4 LINE L1 -8 6147 5172 38 81 0 0 chr1 180864065 180864152 -61800201 + AT_rich Low_complexity Low_complexity 1 87 0 327 296 172 47 chr1 180865225 180865263 -61799090 - LTR50 LTR ERVL -323 472 440 4796 101 79 38 chr1 180865263 180866056 -61798297 + LTR12 LTR ERV1 1 826 0 327 296 172 47 chr1 180866056 180866419 -61797934 - LTR50 LTR ERVL -355 440 21 25 0 0 0 chr1 180866827 180866852 -61797501 + AT_rich Low_complexity Low_complexity 1 25 0 246 279 16 0 chr1 180867285 180867346 -61797007 + MIR SINE MIR 195 256 -6 23 0 0 0 chr1 180868114 180868137 -61796216 + AT_rich Low_complexity Low_complexity 1 23 0 327 227 0 40 chr1 180868158 180868233 -61796120 - MER58 DNA MER1_type -9 2411 2340 25 75 0 0 chr1 180868306 180868359 -61795994 + AT_rich Low_complexity Low_complexity 1 53 0 6362 206 45 23 chr1 180868463 180868919 -61795434 - L1MA8 LINE L1 -6 7306 6862 354 23 0 0 chr1 180868919 180868962 -61795391 + (TG)n Simple_repeat Simple_repeat 2 44 0 6362 206 45 23 chr1 180868962 180868975 -61795378 - L1MA8 LINE L1 -450 6862 6851 401 0 20 0 chr1 180868975 180869024 -61795329 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 6362 206 45 23 chr1 180869024 180870004 -61794349 - L1MA8 LINE L1 -461 6851 5894 315 0 0 0 chr1 180870004 180870039 -61794314 + (TG)n Simple_repeat Simple_repeat 2 36 0 6362 206 45 23 chr1 180870039 180870584 -61793769 - L1MA8 LINE L1 -1418 5894 5363 216 0 0 0 chr1 180870584 180870608 -61793745 + (TA)n Simple_repeat Simple_repeat 2 25 0 6362 206 45 23 chr1 180870608 180871066 -61793287 - L1MA8 LINE L1 -1949 5363 4781 4336 251 50 40 chr1 180871076 180873629 -61790724 - L1MA8 LINE L1 -2680 4487 1961 2013 127 3 0 chr1 180873629 180873921 -61790432 + AluSp SINE Alu 1 293 -20 4336 251 50 40 chr1 180873921 180874043 -61790310 - L1MA8 LINE L1 -5206 1961 1842 2852 198 53 47 chr1 180874043 180874740 -61789613 - MER44D DNA MER2_type -3 702 2 4336 251 50 40 chr1 180874740 180875283 -61789070 - L1MA8 LINE L1 -5325 1842 1534 195 42 0 0 chr1 180876041 180876065 -61788288 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 306 0 0 0 chr1 180876064 180876098 -61788255 + (TG)n Simple_repeat Simple_repeat 1 34 0 45 69 0 0 chr1 180876144 180876231 -61788122 + AT_rich Low_complexity Low_complexity 1 87 0 560 14 14 0 chr1 180876746 180876815 -61787538 + (GAAA)n Simple_repeat Simple_repeat 1 70 0 454 315 29 21 chr1 180877416 180877657 -61786696 - L1MC4 LINE L1 -1341 6701 6459 2427 220 18 18 chr1 180878544 180879045 -61785308 + MLT2B1 LTR ERVL 1 501 -19 316 89 71 36 chr1 180879078 180879134 -61785219 + MLT2B1 LTR ERVL 463 520 0 186 405 35 9 chr1 180879548 180879664 -61784689 + L2 LINE L2 2934 3052 -220 189 107 0 0 chr1 180880144 180880172 -61784181 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 304 298 50 8 chr1 180880212 180880333 -61784020 - MIR SINE MIR -55 207 82 180 111 0 0 chr1 180880437 180880464 -61783889 + (TTA)n Simple_repeat Simple_repeat 2 28 0 421 176 33 0 chr1 180880536 180880627 -61783726 + MER53 DNA DNA 96 189 0 379 301 8 8 chr1 180880776 180880909 -61783444 + GA-rich Low_complexity Low_complexity 2 134 0 681 252 7 0 chr1 180880932 180881083 -61783270 + FRAM SINE Alu 1 152 -14 25 51 0 0 chr1 180881615 180881654 -61782699 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 180881660 180881688 -61782665 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr1 180882094 180882131 -61782222 + AT_rich Low_complexity Low_complexity 1 37 0 189 74 0 0 chr1 180884332 180884359 -61779994 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 * 314 23 23 0 chr1 180884358 180884401 -61779952 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 48 0 0 chr1 180884416 180884458 -61779895 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr1 180884756 180884788 -61779565 + AT_rich Low_complexity Low_complexity 1 32 0 31 44 0 0 chr1 180884848 180884893 -61779460 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr1 180886063 180886096 -61778257 + AT_rich Low_complexity Low_complexity 1 33 0 844 166 0 7 chr1 180886202 180886341 -61778012 + AluJo SINE Alu 1 138 -174 679 182 0 38 chr1 180886342 180886474 -61777879 - Tigger2 DNA MER2_type -671 2047 1921 3159 183 75 24 chr1 180886476 180887207 -61777146 + LTR1B LTR ERV1 1 785 0 4011 162 18 36 chr1 180887212 180887983 -61776370 - Tigger2 DNA MER2_type -801 1917 1161 2364 194 0 16 chr1 180887974 180888406 -61775947 - MER66B LTR ERV1 -55 431 7 * 449 267 0 0 chr1 180888433 180888538 -61775815 - L1ME LINE L1 -467 5699 5595 934 19 0 0 chr1 180888538 180888646 -61775707 - L1PA5 LINE L1 -3 6151 6044 305 113 19 19 chr1 180888649 180888702 -61775651 + MER66A LTR ERV1 426 478 0 1134 225 10 13 chr1 180888704 180889006 -61775347 + L1ME1 LINE L1 5700 6000 -166 645 217 7 7 chr1 180889035 180889187 -61775166 + L1MA10 LINE L1 6181 6332 -2 194 309 15 15 chr1 180889319 180889387 -61774966 - MER5A DNA MER1_type 0 189 122 332 179 147 0 chr1 180889409 180889504 -61774849 + MER63 DNA MER1_type 84 192 -738 5758 181 53 5 chr1 180889533 180890647 -61773706 - Tigger2 DNA MER2_type -1540 1178 11 1058 264 55 16 chr1 180890770 180891134 -61773219 + L1M4 LINE L1 4738 5115 -1031 1292 262 95 50 chr1 180891456 180891982 -61772371 + MLT1F1 LTR MaLR 1 549 -18 243 0 0 0 chr1 180891983 180892010 -61772343 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 261 0 0 0 chr1 180892009 180892038 -61772315 + (GA)n Simple_repeat Simple_repeat 2 30 0 273 222 0 0 chr1 180892147 180892210 -61772143 + (TA)n Simple_repeat Simple_repeat 1 63 0 239 146 18 0 chr1 180892261 180892316 -61772037 + GA-rich Low_complexity Low_complexity 2 57 0 44 20 0 0 chr1 180892794 180892845 -61771508 + AT_rich Low_complexity Low_complexity 1 51 0 36 23 0 0 chr1 180893966 180894009 -61770344 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr1 180894758 180894796 -61769557 + AT_rich Low_complexity Low_complexity 1 38 0 2805 269 121 51 chr1 180894859 180895841 -61768512 + L1M3c LINE L1 1 913 -5299 1700 79 24 12 chr1 180895841 180896094 -61768259 + L1PA13 LINE L1 5905 6160 -3 2805 269 121 51 chr1 180896094 180897512 -61766841 + L1M3c LINE L1 913 2177 -4035 6296 243 44 26 chr1 180897617 180897841 -61766512 + L1M3c LINE L1 2329 2548 -3662 1821 148 7 7 chr1 180897841 180898151 -61766202 + AluSx SINE Alu 1 310 0 6296 243 44 26 chr1 180898151 180898663 -61765690 + L1M3c LINE L1 2548 3049 -3161 2064 111 20 3 chr1 180898663 180898960 -61765393 - AluY SINE Alu -9 302 1 6296 243 44 26 chr1 180898960 180900395 -61763958 + L1M3c LINE L1 3049 4541 -1669 967 136 0 7 chr1 180900395 180900542 -61763811 + MSTA LTR MaLR 277 422 -6 264 218 0 0 chr1 180900543 180900598 -61763755 - L1MB1 LINE L1 -90 6078 6024 275 209 0 0 chr1 180900629 180900672 -61763681 - AluJ/monomer SINE Alu -259 43 1 449 246 25 0 chr1 180900679 180900797 -61763556 - L1 LINE L1 -821 5325 5205 405 165 22 22 chr1 180900792 180900883 -61763470 - L1 LINE L1 -1579 4567 4477 * 1231 209 7 56 chr1 180900886 180901017 -61763336 - MSTB LTR MaLR -153 273 137 2284 86 3 10 chr1 180901017 180901318 -61763035 + AluY SINE Alu 1 299 -12 1231 209 7 56 chr1 180901318 180901473 -61762880 - MSTB LTR MaLR -289 137 1 720 212 42 62 chr1 180901473 180901732 -61762621 + L1MA10 LINE L1 6081 6334 0 321 26 0 0 chr1 180901884 180901922 -61762431 + (CA)n Simple_repeat Simple_repeat 2 39 0 6862 128 106 99 chr1 180902227 180903932 -61760421 - pTR5 LTR ERV1 0 2438 375 724 293 45 29 chr1 180904992 180905703 -61758650 + L1ME2 LINE L1 5273 6082 -88 240 86 0 0 chr1 180905703 180905738 -61758615 + (TG)n Simple_repeat Simple_repeat 2 36 0 724 293 45 29 chr1 180905738 180905809 -61758544 + L1ME2 LINE L1 6082 6150 -20 225 170 0 0 chr1 180905867 180905914 -61758439 - L1MC4 LINE L1 -1344 6698 6652 695 221 202 19 chr1 180906088 180906355 -61757998 + MLT1A1 LTR MaLR 50 365 0 1654 260 108 28 chr1 180906362 180907300 -61757053 - L1MEc LINE L1 -3151 3064 2094 338 282 79 35 chr1 180907323 180907639 -61756714 - L1MEc LINE L1 -4413 1983 1654 515 299 57 73 chr1 180907647 180908069 -61756284 - L1MEc LINE L1 -4888 1508 1094 26 0 0 0 chr1 180908279 180908305 -61756048 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 180908523 180908546 -61755807 + AT_rich Low_complexity Low_complexity 1 23 0 246 269 0 75 chr1 180908674 180908713 -61755640 - MIR SINE MIR -111 151 111 2293 113 37 6 chr1 180908713 180909066 -61755287 - THE1B LTR MaLR 0 364 1 246 269 0 75 chr1 180909066 180909119 -61755234 - MIR SINE MIR -151 111 66 2815 132 11 7 chr1 180909788 180910244 -61754109 - L1PA13 LINE L1 -307 5861 5404 1752 141 20 13 chr1 180910244 180910542 -61753811 + L1PA13 LINE L1 5859 6159 -4 21 57 0 0 chr1 180912607 180912642 -61751711 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr1 180913254 180913298 -61751055 + AT_rich Low_complexity Low_complexity 1 44 0 687 268 0 12 chr1 180913476 180913644 -61750709 - MER5B DNA MER1_type -6 172 7 251 297 71 10 chr1 180913654 180913950 -61750403 - L1MEd LINE L1 -2920 4037 3724 27 49 0 0 chr1 180914238 180914279 -61750074 + AT_rich Low_complexity Low_complexity 1 41 0 317 298 29 10 chr1 180914810 180914914 -61749439 - L1MEd LINE L1 -5011 1936 1831 287 338 102 38 chr1 180916121 180916544 -61747809 + ERVL LTR ERVL 3758 4207 -1557 2329 69 0 20 chr1 180916898 180917202 -61747151 - AluY SINE Alu -13 298 1 246 273 0 0 chr1 180917861 180917916 -61746437 + MER69 DNA AcHobo 1 55 -2471 1869 242 69 23 chr1 180917941 180918461 -61745892 + MER77 LTR ERV1 54 597 -8 426 286 43 0 chr1 180918566 180918706 -61745647 + MER69 DNA AcHobo 51 196 -2330 222 62 0 0 chr1 180918788 180918820 -61745533 + (CA)n Simple_repeat Simple_repeat 2 33 0 321 26 0 0 chr1 180919066 180919104 -61745249 + (TA)n Simple_repeat Simple_repeat 2 39 0 564 300 96 24 chr1 180919143 180919262 -61745091 + MER69 DNA AcHobo 460 569 -1957 2124 127 0 0 chr1 180919262 180919561 -61744792 - AluSg SINE Alu -11 299 1 564 300 96 24 chr1 180919561 180919734 -61744619 + MER69 DNA AcHobo 569 773 -1753 546 278 117 14 chr1 180919780 180920223 -61744130 + MER69 DNA AcHobo 2031 2519 -7 190 237 0 0 chr1 180920414 180920452 -61743901 + L2 LINE L2 3268 3305 -8 345 361 71 6 chr1 180920591 180920760 -61743593 + MIR SINE MIR 26 205 -57 36 77 0 0 chr1 180922242 180922320 -61742033 + AT_rich Low_complexity Low_complexity 1 78 0 1076 284 42 3 chr1 180922588 180922898 -61741455 - MER90 LTR ERV1 0 614 293 186 43 0 0 chr1 180922899 180922922 -61741431 + (CAATA)n Simple_repeat Simple_repeat 3 25 0 43 56 0 0 chr1 180923105 180923176 -61741177 + AT_rich Low_complexity Low_complexity 1 71 0 2333 220 26 52 chr1 180923613 180923983 -61740370 + MER67C LTR ERV1 4 347 -363 1573 141 18 81 chr1 180923983 180924316 -61740037 - AluJb SINE Alu 0 312 1 2333 220 26 52 chr1 180924316 180924669 -61739684 + MER67C LTR ERV1 347 708 -2 326 257 19 48 chr1 180925871 180925976 -61738377 - L1MEd LINE L1 -5125 1730 1629 514 309 68 17 chr1 180925981 180926217 -61738136 - L1MEd LINE L1 -6278 581 334 262 271 43 14 chr1 180926254 180926324 -61738029 - L1MEd LINE L1 -6777 82 11 354 253 24 48 chr1 180926792 180926925 -61737428 - L1 LINE L1 -2530 3616 3487 272 160 287 0 chr1 180926991 180927085 -61737268 - L1MA8 LINE L1 -1 6290 6170 241 279 133 40 chr1 180927082 180927534 -61736819 - L1 LINE L1 -2699 3447 2954 * 420 313 129 39 chr1 180927984 180928217 -61736136 - Zaphod DNA AcHobo -3698 333 80 269 273 39 0 chr1 180928244 180928321 -61736032 + MIR SINE MIR 109 188 -74 652 305 12 0 chr1 180928500 180928664 -61735689 + MER58A DNA MER1_type 7 172 -52 186 118 0 0 chr1 180928701 180928735 -61735618 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 71 0 0 chr1 180928998 180929040 -61735313 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 180929153 180929178 -61735175 + AT_rich Low_complexity Low_complexity 1 25 0 4136 186 20 35 chr1 180931087 180932051 -61732302 - L1PB4 LINE L1 -18 6138 5179 2605 248 65 3 chr1 180932047 180932909 -61731444 + L1PA15-16 LINE L1 1915 2839 -4010 * 209 95 71 0 chr1 180933258 180933300 -61731053 + T-rich Low_complexity Low_complexity 2 46 0 277 337 84 71 chr1 180933412 180933851 -61730502 + L2 LINE L2 2330 2774 -540 281 205 0 13 chr1 180934283 180934361 -61729992 + (TG)n Simple_repeat Simple_repeat 2 78 0 21 0 0 0 chr1 180934695 180934716 -61729637 + AT_rich Low_complexity Low_complexity 1 21 0 330 261 103 22 chr1 180935147 180935331 -61729022 + L1MB8 LINE L1 5734 5932 -246 31 26 0 0 chr1 180936141 180936179 -61728174 + AT_rich Low_complexity Low_complexity 1 38 0 509 271 183 8 chr1 180936536 180936787 -61727566 + L1M4 LINE L1 3654 3948 -2198 10233 223 28 26 chr1 180936867 180937184 -61727169 - L1PA16 LINE L1 -25 6844 6529 2117 62 59 3 chr1 180937184 180937474 -61726879 - AluY SINE Alu -5 306 1 10233 223 28 26 chr1 180937474 180941076 -61723277 - L1PA16 LINE L1 -340 6529 2901 2146 119 3 0 chr1 180941076 180941388 -61722965 - AluSq SINE Alu 0 313 1 10233 223 28 26 chr1 180941388 180941610 -61722743 - L1PA16 LINE L1 -3968 2901 2681 1176 183 25 21 chr1 180941611 180941851 -61722502 - AluJb SINE Alu 0 312 72 22 0 0 0 chr1 180942364 180942386 -61721967 + AT_rich Low_complexity Low_complexity 1 22 0 944 338 123 26 chr1 180942651 180943412 -61720941 - L2 LINE L2 -461 2853 2019 3460 197 65 4 chr1 180943499 180944235 -61720118 - L1MB3 LINE L1 -8 6175 5395 * 4163 248 58 19 chr1 180944234 180944489 -61719864 + L1M4 LINE L1 3851 4095 -2051 1512 143 43 108 chr1 180944489 180944834 -61719519 + THE1C LTR MaLR 4 322 -53 2110 105 0 3 chr1 180944834 180945151 -61719202 + AluSg SINE Alu 1 316 0 1512 143 43 108 chr1 180945151 180945202 -61719151 + THE1C LTR MaLR 322 375 0 4163 248 58 19 chr1 180945202 180946442 -61717911 + L1M4 LINE L1 4095 5403 -743 7984 110 2 4 chr1 180996655 180997769 -61666584 + HERVL-A2 LTR ERVL 4543 5654 0 1766 146 3 32 chr1 180997769 180997896 -61666457 + MLT2A2 LTR ERVL 1 130 -323 1842 148 81 26 chr1 180997896 180998241 -61666112 - THE1B LTR MaLR 0 364 1 1766 146 3 32 chr1 180998241 180998422 -61665931 + MLT2A2 LTR ERVL 130 300 -153 5489 56 4 0 chr1 180998423 180999114 -61665239 - L1P LINE L1 -1554 4592 3899 294 29 0 0 chr1 180999320 180999355 -61664998 + (TG)n Simple_repeat Simple_repeat 2 36 0 1512 283 29 52 chr1 180999828 181000444 -61663909 + L1ME LINE L1 53 654 -5742 817 242 41 3 chr1 181000450 181000761 -61663592 + L1ME LINE L1 5254 5574 -661 494 229 19 1 chr1 181001867 181001989 -61662364 - L1MD2 LINE L1 -4 8038 6241 720 208 29 16 chr1 181002203 181002441 -61661912 + L1MA8 LINE L1 5556 5793 -376 2209 191 30 30 chr1 181002474 181002981 -61661372 + L1MA8 LINE L1 5783 6289 -2 264 300 85 27 chr1 181003811 181004037 -61660316 + MLT1L LTR MaLR 228 543 -72 240 380 44 0 chr1 181004861 181004974 -61659379 + L2 LINE L2 3155 3272 0 30 45 0 0 chr1 181005078 181005122 -61659231 + AT_rich Low_complexity Low_complexity 1 44 0 29 28 0 0 chr1 181005865 181005901 -61658452 + AT_rich Low_complexity Low_complexity 1 36 0 347 237 119 37 chr1 181005983 181006193 -61658160 - L1ME3 LINE L1 -271 5899 5676 618 276 0 70 chr1 181006208 181006422 -61657931 + MER20 DNA MER1_type 1 199 -20 653 302 47 10 chr1 181006475 181006797 -61657556 - L1ME3 LINE L1 -605 5557 5260 183 42 0 0 chr1 181006893 181006917 -61657436 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 1038 316 47 31 chr1 181007480 181007989 -61656364 + L2 LINE L2 2394 2910 -404 246 283 6 98 chr1 181007996 181008169 -61656184 + L2 LINE L2 3142 3298 -15 313 325 45 73 chr1 181008308 181008554 -61655799 - MLT1I LTR MaLR -24 385 147 24 0 0 0 chr1 181008874 181008898 -61655455 + AT_rich Low_complexity Low_complexity 1 24 0 385 236 49 83 chr1 181010966 181011110 -61653243 + MLT1H LTR MaLR 392 530 -19 28 61 0 0 chr1 181011630 181011679 -61652674 + AT_rich Low_complexity Low_complexity 1 49 0 368 298 99 27 chr1 181012571 181012833 -61651520 + L1M4 LINE L1 2251 2531 -3615 283 319 65 5 chr1 181012930 181013115 -61651238 + L1M4 LINE L1 4025 4220 -1926 346 322 69 41 chr1 181013261 181013578 -61650775 - L1MEc LINE L1 -5118 1278 953 1442 132 132 34 chr1 181013593 181013918 -61650435 - L1MA5 LINE L1 -5 6295 5939 700 236 85 10 chr1 181014111 181014310 -61650043 - MER20 DNA MER1_type -5 214 1 189 107 0 0 chr1 181014698 181014726 -61649627 + (T)n Simple_repeat Simple_repeat 1 28 0 686 243 76 16 chr1 181014726 181014911 -61649442 - MLT1C LTR MaLR -46 421 226 279 0 0 0 chr1 181014913 181014944 -61649409 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5006 68 1 6 chr1 181014948 181015600 -61648753 - L1PA5 LINE L1 -8 6146 5498 385 290 48 0 chr1 181015648 181015772 -61648581 - L1MEc LINE L1 -6135 261 132 2104 74 3 54 chr1 181016130 181016459 -61647894 - AluY SINE Alu 0 314 1 548 327 83 77 chr1 181017672 181017780 -61646573 - L2 LINE L2 -348 2966 2860 2087 132 3 0 chr1 181017780 181018090 -61646263 + AluY SINE Alu 1 311 0 548 327 83 77 chr1 181018090 181018654 -61645699 - L2 LINE L2 -454 2860 2290 222 194 0 0 chr1 181018802 181018838 -61645515 + (TG)n Simple_repeat Simple_repeat 1 36 0 27 49 0 0 chr1 181018838 181018879 -61645474 + AT_rich Low_complexity Low_complexity 1 41 0 1537 189 7 21 chr1 181018975 181019260 -61645093 - AluJb SINE Alu -31 281 1 21 71 0 0 chr1 181019416 181019458 -61644895 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr1 181019646 181019690 -61644663 + AT_rich Low_complexity Low_complexity 1 44 0 720 274 51 15 chr1 181020594 181020791 -61643562 + MER58A DNA MER1_type 21 224 0 344 306 54 41 chr1 181021797 181021944 -61642409 - LTR33 LTR ERVL -235 286 138 1916 201 31 63 chr1 181022065 181022587 -61641766 - MLT1D LTR MaLR 0 505 1 229 294 15 0 chr1 181022752 181022820 -61641533 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 216 219 0 0 chr1 181022849 181022890 -61641463 + (TAA)n Simple_repeat Simple_repeat 3 43 0 21 36 0 0 chr1 181023037 181023065 -61641288 + AT_rich Low_complexity Low_complexity 1 28 0 1426 223 35 13 chr1 181023357 181023730 -61640623 - MER67C LTR ERV1 0 710 330 403 262 0 21 chr1 181023766 181023907 -61640446 - MER67C LTR ERV1 -539 171 34 577 284 89 58 chr1 181024020 181024414 -61639939 + MLT1I LTR MaLR 4 409 0 2167 268 29 58 chr1 181026005 181027023 -61637330 + L1MC/D LINE L1 4236 5223 -923 22 0 0 0 chr1 181028203 181028225 -61636128 + AT_rich Low_complexity Low_complexity 1 22 0 225 65 0 0 chr1 181028873 181028904 -61635449 + (TG)n Simple_repeat Simple_repeat 2 32 0 235 217 44 0 chr1 181029184 181029268 -61635085 - MIR SINE MIR -81 127 39 10087 42 0 0 chr1 181029983 181031605 -61632748 - L1P2 LINE L1 -365 5790 4169 9000 42 2 0 chr1 181031604 181032734 -61631619 + L1P2 LINE L1 3044 4175 -1971 * 423 360 56 29 chr1 181032810 181033116 -61631237 - LTR16A1 LTR ERVL 0 457 144 571 26 26 0 chr1 181033528 181033605 -61630748 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 905 312 136 31 chr1 181033637 181034182 -61630171 - MLT2F LTR ERVL -60 603 2 34 42 0 0 chr1 181034989 181035037 -61629316 + AT_rich Low_complexity Low_complexity 1 48 0 27 49 0 0 chr1 181035527 181035568 -61628785 + AT_rich Low_complexity Low_complexity 1 41 0 421 245 0 49 chr1 181035751 181035853 -61628500 + Tigger3b DNA MER2_type 6 102 -1129 * 4690 137 92 6 chr1 181035844 181036732 -61627621 + Tigger3b DNA MER2_type 266 1230 -1 23 54 0 0 chr1 181037924 181037961 -61626392 + AT_rich Low_complexity Low_complexity 1 37 0 344 328 53 48 chr1 181038672 181039084 -61625269 + L1MC/D LINE L1 5327 5740 -2068 1780 144 55 25 chr1 181039418 181039779 -61624574 - L1MA9 LINE L1 -31 6281 5910 484 298 190 31 chr1 181039850 181040266 -61624087 - L1ME4a LINE L1 -251 5870 5389 210 154 0 0 chr1 181040291 181040330 -61624023 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 503 301 127 55 chr1 181040536 181040915 -61623438 - L2 LINE L2 0 3313 2908 3911 168 30 10 chr1 181040960 181041655 -61622698 - MER50 LTR ERV1 -23 711 3 500 284 221 7 chr1 181041662 181041933 -61622420 - L2 LINE L2 -498 2816 2488 436 249 10 85 chr1 181041987 181042188 -61622165 + LTR41 LTR ERVL 1 186 -587 1212 275 94 28 chr1 181042775 181043410 -61620943 - LTR51 LTR ERV1 -10 825 214 1199 362 106 60 chr1 181043673 181044919 -61619434 - L2 LINE L2 -1909 1405 103 770 237 22 58 chr1 181044922 181045196 -61619157 - L1 LINE L1 -2422 3724 3461 21 57 0 0 chr1 181045196 181045231 -61619122 + AT_rich Low_complexity Low_complexity 1 35 0 1257 210 122 26 chr1 181045287 181045846 -61618507 + L1MA10 LINE L1 5182 5822 -469 2385 85 0 0 chr1 181045853 181046147 -61618206 + AluSc SINE Alu 1 294 -15 237 178 0 0 chr1 181046148 181046193 -61618160 + CT-rich Low_complexity Low_complexity 2 46 0 7931 66 7 214 chr1 181046193 181047931 -61616422 + SVA Other Other 1 1378 -8 639 218 18 24 chr1 181047932 181048097 -61616256 + MLT1A2 LTR MaLR 161 324 -50 2012 201 48 2 chr1 181048128 181048570 -61615783 + L1MA10 LINE L1 5871 6332 -2 223 234 52 39 chr1 181048646 181048723 -61615630 + MIR SINE MIR 168 245 -17 22 70 0 0 chr1 181049665 181049708 -61614645 + AT_rich Low_complexity Low_complexity 1 43 0 2220 88 10 16 chr1 181049841 181050147 -61614206 - AluY SINE Alu -7 304 1 1448 183 27 91 chr1 181050309 181050441 -61613912 + MER7A DNA MER2_type 1 140 -2898 2170 124 0 9 chr1 181050441 181050756 -61613597 - AluSx SINE Alu 0 312 1 1448 183 27 91 chr1 181050756 181050995 -61613358 + MER7A DNA MER2_type 140 346 0 402 306 92 12 chr1 181051497 181051833 -61612520 - L1M4 LINE L1 -1696 4450 4088 339 230 0 0 chr1 181052520 181052607 -61611746 + (TA)n Simple_repeat Simple_repeat 2 88 0 10789 195 47 9 chr1 181052607 181058017 -61606336 - L1P5 LINE L1 -355 6512 636 902 212 5 0 chr1 181058023 181058216 -61606137 - L1P5 LINE L1 -6667 196 3 1368 251 81 73 chr1 181058314 181059275 -61605078 - L1M4 LINE L1 -2976 3170 2202 31 99 0 0 chr1 181059353 181059454 -61604899 + AT_rich Low_complexity Low_complexity 1 101 0 213 312 65 48 chr1 181059863 181060049 -61604304 - L2 LINE L2 -928 2386 2198 426 242 99 43 chr1 181060076 181060237 -61604116 - MER58C DNA MER1_type -10 205 36 658 352 84 9 chr1 181060271 181060592 -61603761 - L2 LINE L2 -1755 1559 1215 430 309 221 3 chr1 181060682 181060980 -61603373 - L2 LINE L2 -2422 892 530 4072 25 0 0 chr1 181061340 181061815 -61602538 - L1PA3 LINE L1 -3 6152 5678 207 69 0 0 chr1 181062976 181063005 -61601348 + (GA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr1 181063214 181063235 -61601118 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 181063267 181063289 -61601064 + AT_rich Low_complexity Low_complexity 1 22 0 2293 51 10 0 chr1 181063961 181064257 -61600096 - L1PA4 LINE L1 0 6155 5857 1222 208 3 70 chr1 181064342 181064654 -61599699 + AluJo SINE Alu 2 292 -20 21 57 0 0 chr1 181065135 181065170 -61599183 + AT_rich Low_complexity Low_complexity 1 35 0 1216 249 9 6 chr1 181066251 181066600 -61597753 - L1P LINE L1 -2213 3933 3584 255 324 196 41 chr1 181066883 181067102 -61597251 + L2 LINE L2 2395 2647 -667 243 119 102 0 chr1 181067161 181067220 -61597133 + L1MA9 LINE L1 6248 6312 0 346 372 139 25 chr1 181067228 181067776 -61596577 + L2 LINE L2 2702 3313 0 21 71 0 0 chr1 181067967 181068009 -61596344 + AT_rich Low_complexity Low_complexity 1 42 0 541 343 82 4 chr1 181069571 181069804 -61594549 + MIR SINE MIR 12 262 0 268 337 12 0 chr1 181070244 181070330 -61594023 + MIR SINE MIR 66 152 -110 242 274 0 0 chr1 181070400 181070462 -61593891 + L1P4 LINE L1 5683 5744 -417 24 32 0 0 chr1 181070554 181070585 -61593768 + AT_rich Low_complexity Low_complexity 1 31 0 3989 204 56 25 chr1 181070726 181072286 -61592067 + MER52A LTR ERV1 1 1755 0 31 0 0 0 chr1 181072380 181072411 -61591942 + AT_rich Low_complexity Low_complexity 1 31 0 374 301 32 89 chr1 181072482 181072764 -61591589 + L1M4 LINE L1 4390 4655 -1491 803 262 83 8 chr1 181072916 181073185 -61591168 - MLT1F1 LTR MaLR 0 567 247 2012 147 41 19 chr1 181073893 181074260 -61590093 - THE1C LTR MaLR 0 375 1 2504 92 57 11 chr1 181074260 181074631 -61589722 - THE1C-int LTR MaLR 0 1580 1193 25 0 0 0 chr1 181074896 181074921 -61589432 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr1 181074984 181075013 -61589340 + AT_rich Low_complexity Low_complexity 1 29 0 704 231 0 0 chr1 181076926 181077086 -61587267 - L1PA15 LINE L1 0 6165 6006 222 91 0 0 chr1 181080130 181080163 -61584190 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 306 0 0 0 chr1 181080227 181080261 -61584092 + (CA)n Simple_repeat Simple_repeat 2 35 0 299 322 78 0 chr1 181080480 181080595 -61583758 + MIR SINE MIR 18 141 -121 771 181 96 11 chr1 181081367 181081544 -61582809 + LTR47A LTR ERVL 261 452 0 33 56 0 0 chr1 181081578 181081632 -61582721 + AT_rich Low_complexity Low_complexity 1 54 0 6399 73 3 0 chr1 181081942 181083419 -61580934 - L1PA7 LINE L1 0 6154 4720 2437 95 0 0 chr1 181083422 181083769 -61580584 + L1PA7 LINE L1 4364 4710 -1436 22 0 0 0 chr1 181085012 181085034 -61579319 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr1 181085707 181085732 -61578621 + AT_rich Low_complexity Low_complexity 1 25 0 330 332 143 3 chr1 181086101 181086377 -61577976 + L1M4 LINE L1 3564 3917 -2229 22 0 0 0 chr1 181086377 181086399 -61577954 + AT_rich Low_complexity Low_complexity 1 22 0 330 332 143 3 chr1 181086399 181086444 -61577909 + L1M4 LINE L1 3917 3954 -2192 23 33 0 0 chr1 181086491 181086521 -61577832 + AT_rich Low_complexity Low_complexity 1 30 0 641 235 54 10 chr1 181086872 181087097 -61577256 - MER61D LTR ERV1 0 750 268 768 244 48 28 chr1 181087373 181087682 -61576671 - MER61D-int LTR ERV1 -5 8430 6839 11749 180 8 3 chr1 181087851 181088538 -61575815 - MER61D-int LTR ERV1 -1547 5544 4862 4289 82 147 70 chr1 181088538 181089305 -61575048 + LTR12 LTR ERV1 1 826 0 11749 180 8 3 chr1 181089305 181090549 -61573804 - MER61D-int LTR ERV1 -2229 4862 3603 4184 267 30 38 chr1 181090602 181091288 -61573065 - MER61D-int LTR ERV1 -1849 1551 861 1090 98 116 226 chr1 181091288 181091616 -61572737 - AluSp SINE Alu -11 292 1 4184 267 30 38 chr1 181091616 181092475 -61571878 - MER61D-int LTR ERV1 -2539 861 29 570 243 43 0 chr1 181092529 181092669 -61571684 - MER61D LTR ERV1 -18 483 338 1916 184 80 2 chr1 181093134 181093536 -61570817 + L1MA8 LINE L1 5444 5876 -415 899 340 117 15 chr1 181093886 181094478 -61569875 - L2 LINE L2 -1190 2124 1473 611 314 132 11 chr1 181094537 181094900 -61569453 - L2 LINE L2 -2389 925 519 184 385 0 0 chr1 181094909 181094987 -61569366 - L2 LINE L2 -2898 416 339 244 295 9 27 chr1 181095133 181095245 -61569108 + (CATATA)n Simple_repeat Simple_repeat 6 115 0 193 221 11 11 chr1 181096092 181096187 -61568166 + (TA)n Simple_repeat Simple_repeat 1 95 0 22 80 0 0 chr1 181096249 181096299 -61568054 + AT_rich Low_complexity Low_complexity 1 50 0 551 330 58 27 chr1 181096772 181097223 -61567130 - L1MC4 LINE L1 -481 7561 7097 22 0 0 0 chr1 181097361 181097383 -61566970 + AT_rich Low_complexity Low_complexity 1 22 0 227 255 82 31 chr1 181097642 181097740 -61566613 + MIR SINE MIR 74 176 -86 1175 271 70 63 chr1 181097831 181098463 -61565890 + L1ME3A LINE L1 5535 6170 0 22 80 0 0 chr1 181099119 181099169 -61565184 + AT_rich Low_complexity Low_complexity 1 50 0 22 80 0 0 chr1 181099949 181099999 -61564354 + AT_rich Low_complexity Low_complexity 1 50 0 317 111 0 0 chr1 181101352 181101397 -61562956 - AluSp/q SINE Alu -10 293 249 260 200 11 0 chr1 181101958 181102048 -61562305 + (TA)n Simple_repeat Simple_repeat 1 91 0 1600 154 52 4 chr1 181103419 181103686 -61560667 + AluSx SINE Alu 1 280 -32 239 0 0 31 chr1 181103687 181103719 -61560634 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 184 377 123 0 chr1 181103825 181103939 -61560414 + L2 LINE L2 3145 3272 0 23 0 0 0 chr1 181105098 181105121 -61559232 + AT_rich Low_complexity Low_complexity 1 23 0 204 356 89 11 chr1 181105924 181106014 -61558339 - L2 LINE L2 -25 3247 3151 208 298 0 0 chr1 181106474 181106521 -61557832 + (TG)n Simple_repeat Simple_repeat 1 47 0 209 191 0 0 chr1 181106562 181106604 -61557749 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 4758 255 63 48 chr1 181106996 181107364 -61556989 - L1MC3 LINE L1 -22 7763 7402 2350 169 21 7 chr1 181107364 181107790 -61556563 - MSTB1 LTR MaLR 0 432 1 4758 255 63 48 chr1 181107790 181108254 -61556099 - L1MC3 LINE L1 -383 7402 6947 1122 122 27 0 chr1 181108254 181108442 -61555911 - L1MA4 LINE L1 -4 6296 6104 4758 255 63 48 chr1 181108442 181110561 -61553792 - L1MC3 LINE L1 -838 6947 4764 977 306 122 21 chr1 181110653 181111087 -61553266 + L1M4 LINE L1 120 597 -6262 1973 252 22 41 chr1 181111096 181111826 -61552527 + L1M4 LINE L1 5031 5746 -1211 759 196 28 0 chr1 181111802 181111945 -61552408 + L1M4 LINE L1 6376 6522 -467 * 630 218 36 0 chr1 181112005 181112170 -61552183 - L1MC/D LINE L1 -855 5489 5319 1530 178 49 0 chr1 181112178 181112464 -61551889 - L1PA16 LINE L1 -9 6157 5858 365 281 49 43 chr1 181112581 181112745 -61551608 - MIR SINE MIR -27 235 71 21 0 0 0 chr1 181112945 181112966 -61551387 + AT_rich Low_complexity Low_complexity 1 21 0 273 261 118 93 chr1 181113360 181113604 -61550749 + MLT1I LTR MaLR 98 351 -58 1824 143 137 8 chr1 181113604 181113983 -61550370 - MSTA LTR MaLR 0 428 1 273 261 118 93 chr1 181113983 181114018 -61550335 + MLT1I LTR MaLR 351 384 -25 213 39 0 0 chr1 181114659 181114685 -61549668 + (A)n Simple_repeat Simple_repeat 1 26 0 623 290 29 29 chr1 181115363 181115570 -61548783 - MER20 DNA MER1_type -5 214 8 27 0 0 0 chr1 181115640 181115667 -61548686 + AT_rich Low_complexity Low_complexity 1 27 0 735 276 134 13 chr1 181117021 181117401 -61546952 + L1ME3 LINE L1 5559 5984 -178 501 47 0 0 chr1 181117401 181117465 -61546888 + (TG)n Simple_repeat Simple_repeat 1 64 0 195 214 18 18 chr1 181117643 181117699 -61546654 + MER5C DNA MER1_type 265 320 -4 256 102 41 0 chr1 181118034 181118083 -61546270 + GA-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr1 181118256 181118277 -61546076 + AT_rich Low_complexity Low_complexity 1 21 0 940 325 168 36 chr1 181118717 181119718 -61544635 + L2 LINE L2 1763 2895 -419 18465 42 3 2 chr1 181119774 181122121 -61542232 - L1P LINE L1 -1846 4300 1952 6855 35 1 0 chr1 181122121 181122968 -61541385 + L1PA4 LINE L1 5324 6171 0 398 52 0 17 chr1 181123037 181123095 -61541258 + (CATA)n Simple_repeat Simple_repeat 3 59 0 403 151 21 0 chr1 181123114 181123207 -61541146 + GA-rich Low_complexity Low_complexity 1 95 0 895 300 52 59 chr1 181123230 181123790 -61540563 + LTR38 LTR ERV1 1 556 0 1013 267 116 3 chr1 181124023 181124412 -61539941 - MER110A LTR ERV1 0 468 36 23 86 0 0 chr1 181124753 181124811 -61539542 + AT_rich Low_complexity Low_complexity 1 58 0 27 0 0 0 chr1 181125406 181125433 -61538920 + AT_rich Low_complexity Low_complexity 1 27 0 244 282 86 8 chr1 181125608 181125725 -61538628 + MARNA DNA Mariner 401 526 -60 194 274 34 128 chr1 181126060 181126240 -61538113 + MIR SINE MIR 57 218 -44 26 30 0 0 chr1 181128099 181128132 -61536221 + AT_rich Low_complexity Low_complexity 1 33 0 3789 169 26 49 chr1 181128159 181128980 -61535373 - L1MA7 LINE L1 -10 6281 5480 423 265 81 33 chr1 181128980 181129191 -61535162 + L1ME3A LINE L1 4103 4323 -1823 274 238 20 13 chr1 181129160 181129259 -61535094 + L1ME1 LINE L1 6073 6179 -4 * 1840 191 40 66 chr1 181129908 181130331 -61534022 + MER47B DNA MER2_type 7 418 0 433 293 136 25 chr1 181130347 181130589 -61533764 + L1ME2 LINE L1 5854 6122 -42 333 268 123 49 chr1 181131133 181131376 -61532977 + L1ME3A LINE L1 4797 5057 -1089 270 291 26 49 chr1 181131482 181131754 -61532599 + L1ME3A LINE L1 5187 5454 -765 456 305 81 46 chr1 181131805 181131969 -61532384 + L1ME3A LINE L1 5548 5705 -463 1609 151 65 37 chr1 181131969 181132293 -61532060 - MER1B DNA MER1_type -4 333 1 456 305 81 46 chr1 181132293 181132522 -61531831 + L1ME3A LINE L1 5705 5962 -206 1968 197 84 22 chr1 181133993 181134455 -61529898 + MER34 LTR ERV1 25 515 -27 413 234 76 103 chr1 181134554 181134844 -61529509 + MER34-int LTR ERV1 72 353 -5978 1963 247 57 72 chr1 181135002 181135809 -61528544 + MER34-int LTR ERV1 355 1149 -5182 2183 178 46 5 chr1 181138302 181138718 -61525635 - MER4C LTR ERV1 -32 433 1 650 347 0 0 chr1 181138962 181139161 -61525192 + L1MA9 LINE L1 256 454 -5501 410 339 97 10 chr1 181139192 181139597 -61524756 + L1MA9 LINE L1 302 729 -5226 6822 212 34 21 chr1 181139615 181141693 -61522660 + L1MA9 LINE L1 3468 5577 -623 2182 202 19 35 chr1 181141693 181142173 -61522180 + MER70A LTR ERVL 1 472 0 6822 212 34 21 chr1 181142173 181142197 -61522156 + L1MA9 LINE L1 5577 5599 -601 800 195 0 29 chr1 181142201 181142375 -61521978 + L1MA9 LINE L1 5758 5926 -274 2593 161 33 62 chr1 181142380 181143013 -61521340 + L1MA9 LINE L1 5586 6200 0 2380 50 7 7 chr1 181143428 181143730 -61520623 - AluY SINE Alu -9 302 1 346 196 21 0 chr1 181143923 181144020 -61520333 + (TA)n Simple_repeat Simple_repeat 1 99 0 22 35 0 0 chr1 181145867 181145896 -61518457 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 181145923 181145951 -61518402 + AT_rich Low_complexity Low_complexity 1 28 0 183 162 0 0 chr1 181147637 181147674 -61516679 + T-rich Low_complexity Low_complexity 1 37 0 42822 44 5 3 chr1 181147718 181153862 -61510491 - L1PA4 LINE L1 -3 6152 1 2008 184 20 72 chr1 181153924 181154287 -61510066 - Tigger2a DNA MER2_type -2275 433 97 573 25 0 37 chr1 181154287 181154368 -61509985 - L1PA4 LINE L1 0 6155 6078 2008 184 20 72 chr1 181154368 181154461 -61509892 - Tigger2a DNA MER2_type -2611 97 1 302 179 18 18 chr1 181154616 181154728 -61509625 + (TA)n Simple_repeat Simple_repeat 1 112 0 421 263 55 83 chr1 181154730 181154947 -61509406 - MIR SINE MIR -24 238 28 25 51 0 0 chr1 181155386 181155425 -61508928 + AT_rich Low_complexity Low_complexity 1 39 0 871 259 82 38 chr1 181156727 181157067 -61507286 + MSTC LTR MaLR 74 428 0 237 98 0 0 chr1 181157117 181157158 -61507195 + (CA)n Simple_repeat Simple_repeat 2 42 0 2081 136 0 0 chr1 181158097 181158399 -61505954 + AluSx SINE Alu 11 312 0 4412 241 27 36 chr1 181158488 181160150 -61504203 + L1PA15 LINE L1 328 2114 -4673 6666 214 18 32 chr1 181160162 181161809 -61502544 + L1PA15 LINE L1 3880 5502 -1295 5103 152 16 3 chr1 181162084 181162295 -61502058 + L1PA15 LINE L1 5477 5684 -1132 1986 134 0 0 chr1 181162295 181162585 -61501768 + AluSg SINE Alu 6 295 -15 5103 152 16 3 chr1 181162585 181163716 -61500637 + L1PA15 LINE L1 5684 6816 0 1442 225 36 17 chr1 181163755 181164111 -61500242 + MLT1A1 LTR MaLR 1 363 -2 201 138 35 17 chr1 181164123 181164181 -61500172 + (TA)n Simple_repeat Simple_repeat 2 60 0 436 271 120 74 chr1 181165103 181165446 -61498907 - L1MDa LINE L1 -876 2025 1572 48 43 0 0 chr1 181166706 181166775 -61497578 + AT_rich Low_complexity Low_complexity 1 69 0 72 87 0 0 chr1 181166815 181166999 -61497354 + AT_rich Low_complexity Low_complexity 1 184 0 2332 101 0 0 chr1 181167241 181167539 -61496814 + AluSg SINE Alu 1 298 -12 1760 160 7 3 chr1 181168019 181168326 -61496027 - AluJb SINE Alu -2 310 3 393 317 0 14 chr1 181168508 181168650 -61495703 - L1M4 LINE L1 -1958 4188 4049 233 186 119 0 chr1 181168703 181168762 -61495591 - L1M4 LINE L1 -2220 3926 3861 1165 217 49 12 chr1 181168762 181169046 -61495307 - MLT1D LTR MaLR 0 505 228 344 230 35 23 chr1 181169069 181169156 -61495197 - MLT1D LTR MaLR -417 88 1 531 320 20 37 chr1 181169199 181169499 -61494854 - L1M4 LINE L1 -2310 3836 3542 624 237 137 40 chr1 181169583 181170020 -61494333 + L1ME2 LINE L1 5641 6151 -13 240 313 0 24 chr1 181171851 181171934 -61492419 + GA-rich Low_complexity Low_complexity 1 81 0 220 304 43 87 chr1 181172096 181172280 -61492073 + MER5B DNA MER1_type 3 178 0 34 65 0 0 chr1 181173384 181173446 -61490907 + AT_rich Low_complexity Low_complexity 1 62 0 307 279 93 16 chr1 181174460 181174589 -61489764 + L1ME4a LINE L1 5939 6077 -44 200 206 0 0 chr1 181175095 181175129 -61489224 + L2 LINE L2 3178 3211 -102 189 89 67 0 chr1 181175133 181175178 -61489175 + (TA)n Simple_repeat Simple_repeat 1 48 0 3557 211 28 48 chr1 181175219 181175997 -61488356 - L1MA9 LINE L1 -37 6275 5518 2412 100 0 0 chr1 181175997 181176308 -61488045 - AluSx SINE Alu -1 311 1 3557 211 28 48 chr1 181176308 181176471 -61487882 - L1MA9 LINE L1 -794 5518 5353 2984 209 36 71 chr1 181176472 181176884 -61487469 + L1 LINE L1 4478 4903 -1243 1926 149 19 27 chr1 181176884 181177260 -61487093 + THE1C LTR MaLR 3 375 0 2984 209 36 71 chr1 181177260 181177731 -61486622 + L1 LINE L1 4903 5330 -816 2178 102 0 16 chr1 181177731 181178036 -61486317 + AluSq SINE Alu 3 302 -11 2984 209 36 71 chr1 181178036 181178072 -61486281 + L1 LINE L1 5330 5366 -780 183 184 0 0 chr1 181178248 181178286 -61486067 + (TATG)n Simple_repeat Simple_repeat 2 39 0 198 71 0 0 chr1 181179086 181179114 -61485239 + (GA)n Simple_repeat Simple_repeat 1 28 0 220 352 80 28 chr1 181179196 181179372 -61484981 + MIR SINE MIR 64 248 -14 260 374 68 16 chr1 181179847 181180037 -61484316 - L2 LINE L2 -266 3047 2848 191 251 29 117 chr1 181180208 181180379 -61483974 - L2 LINE L2 -135 3178 3023 432 318 126 50 chr1 181180535 181180695 -61483658 - L1ME1 LINE L1 -222 5944 5798 222 37 0 0 chr1 181180695 181180722 -61483631 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1913 96 0 0 chr1 181180725 181180986 -61483367 - AluSx SINE Alu -51 261 1 432 318 126 50 chr1 181180986 181181243 -61483110 - L1ME1 LINE L1 -369 5797 5491 24 67 0 0 chr1 181182285 181182330 -61482023 + AT_rich Low_complexity Low_complexity 1 45 0 232 339 78 9 chr1 181182851 181182966 -61481387 - MIR3 SINE MIR -9 199 77 27 0 0 0 chr1 181183009 181183036 -61481317 + AT_rich Low_complexity Low_complexity 1 27 0 392 139 13 0 chr1 181183717 181183796 -61480557 + (TA)n Simple_repeat Simple_repeat 2 81 0 323 247 127 36 chr1 181184239 181184405 -61479948 + MIR SINE MIR 81 261 -1 469 291 94 33 chr1 181184913 181185157 -61479196 + MIR SINE MIR 2 260 -2 26 0 0 0 chr1 181186474 181186500 -61477853 + AT_rich Low_complexity Low_complexity 1 26 0 7614 20 11 2 chr1 181186625 181188160 -61476193 - L1PA3 LINE L1 -9 6146 4601 31 44 0 0 chr1 181188193 181188238 -61476115 + AT_rich Low_complexity Low_complexity 1 45 0 201 178 22 0 chr1 181188238 181188283 -61476070 + GA-rich Low_complexity Low_complexity 2 47 0 21 0 0 0 chr1 181188694 181188715 -61475638 + AT_rich Low_complexity Low_complexity 1 21 0 282 347 10 0 chr1 181188776 181188874 -61475479 - MIR SINE MIR -86 176 78 21 0 0 0 chr1 181189776 181189797 -61474556 + AT_rich Low_complexity Low_complexity 1 21 0 2223 65 0 42 chr1 181189884 181190191 -61474162 + AluY SINE Alu 1 294 -17 207 0 0 0 chr1 181191139 181191162 -61473191 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 23 54 0 0 chr1 181192197 181192234 -61472119 + AT_rich Low_complexity Low_complexity 1 37 0 182 366 36 0 chr1 181192785 181192897 -61471456 + MIR SINE MIR 109 224 -38 400 349 85 34 chr1 181192960 181193312 -61471041 - HERV16 LTR ERVL -2021 3464 3095 611 267 132 21 chr1 181193410 181193698 -61470655 + L1MCc LINE L1 953 1272 -5151 22 35 0 0 chr1 181193778 181193807 -61470546 + AT_rich Low_complexity Low_complexity 1 29 0 1770 181 19 8 chr1 181193861 181194220 -61470133 + MER47A DNA MER2_type 1 363 -3 342 236 55 9 chr1 181194504 181194518 -61469835 - L1MA10 LINE L1 0 6334 6321 1620 251 137 31 chr1 181194518 181195382 -61468971 - L1ME2 LINE L1 -9 6155 5151 6038 109 13 10 chr1 181195382 181196830 -61467523 - L1PA10 LINE L1 -10 6158 4705 1620 251 137 31 chr1 181196830 181197039 -61467314 - L1ME2 LINE L1 -1013 5151 4965 392 337 31 5 chr1 181197266 181197462 -61466891 - HERV16 LTR ERVL -4603 393 193 364 331 78 0 chr1 181197650 181197804 -61466549 - LTR16A LTR ERVL -57 393 228 405 39 0 0 chr1 181198090 181198141 -61466212 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr1 181198660 181198681 -61465672 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 181198727 181198755 -61465598 + AT_rich Low_complexity Low_complexity 1 28 0 335 304 54 33 chr1 181198782 181198966 -61465387 - L1ME2 LINE L1 -2873 3273 3086 22 35 0 0 chr1 181198992 181199021 -61465332 + AT_rich Low_complexity Low_complexity 1 29 0 1340 160 22 101 chr1 181199131 181199449 -61464904 - AluYb8 SINE Alu -2 316 24 215 160 20 0 chr1 181199468 181199518 -61464835 + (CA)n Simple_repeat Simple_repeat 2 52 0 22 35 0 0 chr1 181199684 181199713 -61464640 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr1 181199984 181200017 -61464336 + AT_rich Low_complexity Low_complexity 1 33 0 5231 127 31 7 chr1 181200911 181201767 -61462586 - L1PA16 LINE L1 -1 6165 5292 2992 153 10 6 chr1 181202621 181203103 -61461250 + LOR1a LTR ERV1 13 496 -1 1452 227 25 0 chr1 181204635 181204937 -61459416 + AluJo SINE Alu 1 309 0 30 0 0 0 chr1 181205605 181205635 -61458718 + AT_rich Low_complexity Low_complexity 1 30 0 461 354 61 27 chr1 181207504 181207670 -61456683 - MLT1K LTR MaLR 0 588 408 432 0 0 0 chr1 181207670 181207718 -61456635 + (TC)n Simple_repeat Simple_repeat 1 48 0 461 354 61 27 chr1 181207718 181207814 -61456539 - MLT1K LTR MaLR -180 408 317 2152 109 3 0 chr1 181208401 181208694 -61455659 - AluSx SINE Alu -18 294 1 240 35 0 0 chr1 181208745 181208774 -61455579 + (TG)n Simple_repeat Simple_repeat 2 30 0 1740 163 7 14 chr1 181208952 181209240 -61455113 + AluSx SINE Alu 1 286 -26 200 308 139 81 chr1 181209328 181209688 -61454665 - L3 LINE CR1 -146 1431 1051 1617 152 80 0 chr1 181210109 181210385 -61453968 - AluSx SINE Alu -14 298 1 348 150 3 23 chr1 181210427 181210508 -61453845 - Alu SINE Alu -258 50 1 44 0 0 0 chr1 181211195 181211239 -61453114 + AT_rich Low_complexity Low_complexity 1 44 0 268 152 50 50 chr1 181213505 181213604 -61450749 - L1MCa LINE L1 -4084 2342 2244 300 354 28 14 chr1 181213614 181213758 -61450595 - L1MCa LINE L1 -4387 2220 2075 4994 194 17 5 chr1 181213769 181215514 -61448839 + L1PA16 LINE L1 4402 6166 0 687 216 31 16 chr1 181215560 181215754 -61448599 - L1MCa LINE L1 -4740 1686 1490 350 297 25 8 chr1 181215789 181215907 -61448446 - L1MCa LINE L1 -6271 155 36 26 0 0 0 chr1 181216117 181216143 -61448210 + AT_rich Low_complexity Low_complexity 1 26 0 239 206 32 0 chr1 181216757 181216820 -61447533 + L1MDa LINE L1 2191 2255 -4285 1033 179 0 5 chr1 181216829 181217019 -61447334 - AluSg/x SINE Alu -1 309 121 6312 89 11 2 chr1 181217032 181218456 -61445897 + L1PA10 LINE L1 4729 6167 -1 3030 274 52 19 chr1 181218478 181220106 -61444247 + L1MDa LINE L1 2299 3985 -2555 1063 258 132 64 chr1 181220518 181220941 -61443412 - MLT2E LTR ERVL 0 628 177 263 184 23 103 chr1 181220954 181220994 -61443359 - Alu SINE Alu 0 300 269 1563 69 0 35 chr1 181220994 181221197 -61443156 - AluSq SINE Alu -117 196 1 263 184 23 103 chr1 181221197 181221243 -61443110 - Alu SINE Alu -31 269 221 * 586 316 24 29 chr1 181221221 181221427 -61442926 - MLT2E LTR ERVL -409 219 15 12202 49 3 0 chr1 181221429 181222946 -61441407 + L1P LINE L1 3742 5262 -884 249 313 70 16 chr1 181223354 181223482 -61440871 - MLT1J LTR MaLR -257 254 120 209 356 8 42 chr1 181224013 181224131 -61440222 - MIR SINE MIR -59 203 90 3292 175 35 19 chr1 181224286 181224972 -61439381 + L1PB4 LINE L1 5460 6156 0 363 367 62 13 chr1 181225158 181225384 -61438969 + MIR SINE MIR 20 256 -6 330 228 63 0 chr1 181226739 181226817 -61437536 + Charlie7 DNA MER1_type 2108 2190 -422 2152 134 31 23 chr1 181226817 181227167 -61437186 - THE1B LTR MaLR 0 364 12 10698 113 16 3 chr1 181227172 181228732 -61435621 - THE1B-int LTR MaLR 0 1580 1 1876 177 33 25 chr1 181228732 181229093 -61435260 - THE1B LTR MaLR 0 364 1 1625 174 35 3 chr1 181229129 181229411 -61434942 - AluJb SINE Alu -21 291 1 359 213 252 25 chr1 181229413 181229502 -61434851 + Charlie7 DNA MER1_type 2187 2255 -357 234 62 0 0 chr1 181229502 181229534 -61434819 + (TA)n Simple_repeat Simple_repeat 2 33 0 359 213 252 25 chr1 181229534 181229730 -61434623 + Charlie7 DNA MER1_type 2255 2537 -75 210 297 62 0 chr1 181230532 181230596 -61433757 - L2 LINE L2 0 3272 3205 244 188 0 72 chr1 181230837 181230906 -61433447 - L1MA7 LINE L1 -133 6158 6095 * 503 188 18 0 chr1 181230905 181231017 -61433336 + L1MA7 LINE L1 6159 6272 -19 2350 86 0 0 chr1 181231037 181231340 -61433013 - AluY SINE Alu -8 303 1 1248 191 3 91 chr1 181231340 181231669 -61432684 - AluJo SINE Alu -12 300 1 22 0 0 0 chr1 181231669 181231691 -61432662 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr1 181232210 181232245 -61432108 + AT_rich Low_complexity Low_complexity 1 35 0 267 103 0 0 chr1 181232589 181232628 -61431725 + (TG)n Simple_repeat Simple_repeat 2 40 0 248 311 33 0 chr1 181232678 181232768 -61431585 + L1MB8 LINE L1 5895 5987 -191 21 71 0 0 chr1 181233007 181233049 -61431304 + AT_rich Low_complexity Low_complexity 1 42 0 253 245 0 0 chr1 181233087 181233136 -61431217 + MER5B DNA MER1_type 1 49 -129 36290 89 27 7 chr1 181233160 181239174 -61425179 - L1PA6 LINE L1 -3 6151 11 350 318 7 53 chr1 181239179 181239330 -61425023 + MER5B DNA MER1_type 29 172 -6 338 78 59 0 chr1 181239775 181239826 -61424527 - MLT2B1 LTR ERVL 0 520 467 207 0 0 0 chr1 181239838 181239861 -61424492 + (CA)n Simple_repeat Simple_repeat 2 24 0 1262 219 56 40 chr1 181240122 181240511 -61423842 - MLT2B1 LTR ERVL -40 404 1 204 125 0 0 chr1 181241730 181241762 -61422591 + (TG)n Simple_repeat Simple_repeat 2 33 0 246 216 0 52 chr1 181241811 181241908 -61422445 + L1MC4 LINE L1 6612 6703 -1339 1561 133 21 0 chr1 181241912 181242152 -61422201 - AluSx SINE Alu -67 245 1 247 256 102 20 chr1 181243105 181243276 -61421077 + L1 LINE L1 4884 5072 -1074 207 0 0 0 chr1 181243435 181243458 -61420895 + (CA)n Simple_repeat Simple_repeat 1 23 0 321 293 23 10 chr1 181243470 181243653 -61420700 + L1P5 LINE L1 5295 5447 -707 844 308 45 28 chr1 181243673 181244073 -61420280 - L1MEc LINE L1 -5953 443 37 311 277 75 61 chr1 181244759 181244945 -61419408 + L1MC5 LINE L1 7537 7730 -231 2126 124 16 44 chr1 181244945 181245331 -61419022 + THE1C LTR MaLR 1 375 0 311 277 75 61 chr1 181245331 181245422 -61418931 + L1MC5 LINE L1 7730 7818 -143 1082 201 101 34 chr1 181245570 181245838 -61418515 + AluJo SINE Alu 1 286 -16 21 0 0 0 chr1 181245844 181245865 -61418488 + AT_rich Low_complexity Low_complexity 1 21 0 723 270 83 5 chr1 181246113 181246317 -61418036 + MER58A DNA MER1_type 5 224 0 291 140 0 0 chr1 181247508 181247558 -61416795 + (TCCCC)n Simple_repeat Simple_repeat 5 54 0 429 214 0 0 chr1 181247565 181247663 -61416690 + T-rich Low_complexity Low_complexity 1 98 0 1269 179 31 72 chr1 181247695 181248014 -61416339 - AluJo SINE Alu -4 308 3 484 75 0 0 chr1 181248170 181248237 -61416116 - MER41A LTR ERV1 -88 466 400 27 49 0 0 chr1 181248754 181248795 -61415558 + AT_rich Low_complexity Low_complexity 1 41 0 21 82 0 0 chr1 181248923 181248972 -61415381 + AT_rich Low_complexity Low_complexity 1 49 0 186 313 31 0 chr1 181249049 181249113 -61415240 - MIR SINE MIR -119 143 78 243 263 0 0 chr1 181249562 181249642 -61414711 + (TA)n Simple_repeat Simple_repeat 1 80 0 545 244 97 25 chr1 181249664 181249983 -61414370 + L1M4 LINE L1 4936 5277 -869 268 244 51 115 chr1 181250119 181250336 -61414017 - L1ME3A LINE L1 -6 6164 5962 1421 196 28 74 chr1 181250488 181250841 -61413512 - MER1B DNA MER1_type 0 337 1 260 104 104 7 chr1 181251218 181251362 -61412991 + (TA)n Simple_repeat Simple_repeat 1 158 0 2036 122 7 0 chr1 181251362 181251649 -61412704 - AluSx SINE Alu -23 289 1 822 255 90 28 chr1 181252102 181252392 -61411961 + LTR41 LTR ERVL 1 308 -465 2385 282 47 78 chr1 181252394 181253510 -61410843 + ERVL LTR ERVL 2171 3251 -2513 1262 241 36 140 chr1 181253948 181254800 -61409553 + LTR41 LTR ERVL 4 767 -6 1902 182 6 6 chr1 181257303 181257655 -61406698 + L1MC1 LINE L1 5850 6201 -132 967 89 0 0 chr1 181257657 181257781 -61406572 + AluSp SINE Alu 2 125 -188 823 166 14 0 chr1 181257783 181257922 -61406431 + L1MC1 LINE L1 6187 6327 -6 236 250 0 17 chr1 181257936 181257996 -61406357 + GA-rich Low_complexity Low_complexity 2 60 0 292 169 26 13 chr1 181257998 181258075 -61406278 + G-rich Low_complexity Low_complexity 6 83 0 1322 235 119 17 chr1 181258369 181258714 -61405639 - MER77 LTR ERV1 -4 601 222 22 35 0 0 chr1 181259625 181259654 -61404699 + AT_rich Low_complexity Low_complexity 1 29 0 400 279 29 29 chr1 181260214 181260354 -61403999 - MIR SINE MIR 0 262 123 194 216 0 0 chr1 181260981 181261018 -61403335 - L2 LINE L2 -1 3271 3235 24 0 0 0 chr1 181261057 181261081 -61403272 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 181261800 181261823 -61402530 + AT_rich Low_complexity Low_complexity 1 23 0 1930 112 25 3 chr1 181263430 181263716 -61400637 - AluSc SINE Alu -13 296 5 1891 174 3 32 chr1 181263983 181264357 -61399996 - L1MA9 LINE L1 0 6312 5950 21 57 0 0 chr1 181264491 181264526 -61399827 + AT_rich Low_complexity Low_complexity 1 35 0 859 239 23 5 chr1 181264783 181264988 -61399365 - L1MA7 LINE L1 -174 6117 5906 834 144 43 27 chr1 181264988 181265175 -61399178 + L1MA7 LINE L1 6102 6291 0 859 239 23 5 chr1 181265175 181265187 -61399166 - L1MA7 LINE L1 -385 5906 5896 26 50 0 0 chr1 181266190 181266230 -61398123 + AT_rich Low_complexity Low_complexity 1 40 0 541 214 23 46 chr1 181266377 181266508 -61397845 - FLAM_A SINE Alu -4 129 2 2517 67 0 0 chr1 181266996 181267324 -61397029 + L1PA4 LINE L1 5828 6155 0 21 0 0 0 chr1 181267588 181267609 -61396744 + AT_rich Low_complexity Low_complexity 1 21 0 6545 80 9 6 chr1 181267696 181268597 -61395756 - L1PA10 LINE L1 -10 6158 5255 1366 64 0 0 chr1 181268923 181269095 -61395258 - L1PA5 LINE L1 -392 5762 5591 3058 50 0 0 chr1 181269095 181269472 -61394881 + L1PA5 LINE L1 5773 6151 -3 23 0 0 0 chr1 181269481 181269504 -61394849 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr1 181269826 181269868 -61394485 + AT_rich Low_complexity Low_complexity 1 42 0 33 25 0 0 chr1 181271283 181271323 -61393030 + AT_rich Low_complexity Low_complexity 1 40 0 342 0 0 0 chr1 181271961 181271999 -61392354 + (TG)n Simple_repeat Simple_repeat 2 39 0 1754 153 11 0 chr1 181271999 181272280 -61392073 - AluSx SINE Alu -25 287 4 1879 121 35 7 chr1 181272282 181272571 -61391782 - LTR9 LTR ERV1 -315 297 1 * 2052 177 42 5 chr1 181272571 181272942 -61391411 + MSTB LTR MaLR 42 426 0 810 299 51 10 chr1 181273083 181273269 -61391084 - MLT1E2 LTR MaLR 0 626 420 246 32 0 0 chr1 181273269 181273300 -61391053 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 810 299 51 10 chr1 181273300 181273427 -61390926 - MLT1E2 LTR MaLR -206 420 300 270 267 172 0 chr1 181273493 181273609 -61390744 - MLT1E2 LTR MaLR -319 307 172 5782 188 24 82 chr1 181274203 181274525 -61389828 - L1MA4 LINE L1 -325 5975 5636 1451 212 16 23 chr1 181274525 181274832 -61389521 - AluJo SINE Alu -1 311 7 5782 188 24 82 chr1 181274832 181277616 -61386737 - L1MA4 LINE L1 -664 5636 3177 278 235 0 25 chr1 181280194 181280275 -61384078 - L1MC4 LINE L1 -1339 6703 6625 214 330 33 11 chr1 181281353 181281444 -61382909 + MIR3 SINE MIR 93 185 -23 42 65 0 0 chr1 181281619 181281696 -61382657 + AT_rich Low_complexity Low_complexity 1 77 0 187 385 0 0 chr1 181281952 181282035 -61382318 + L2 LINE L2 2244 2326 -988 670 324 178 30 chr1 181282138 181282706 -61381647 + L2 LINE L2 2323 2974 -340 464 309 124 49 chr1 181282741 181283242 -61381111 + L2 LINE L2 2739 3274 -39 3469 59 5 0 chr1 181283895 181284339 -61380014 + L1PA7 LINE L1 5704 6149 -5 529 160 65 0 chr1 181285114 181285237 -61379116 - L1MA8 LINE L1 -22 6290 6142 251 323 69 23 chr1 181285461 181285591 -61378762 + MIR SINE MIR 15 150 -112 31 68 0 0 chr1 181286531 181286590 -61377763 + AT_rich Low_complexity Low_complexity 1 59 0 4078 174 39 23 chr1 181286986 181287503 -61376850 - L1MA8 LINE L1 -109 6182 5644 414 0 0 0 chr1 181287503 181287549 -61376804 + (TC)n Simple_repeat Simple_repeat 2 47 0 4078 174 39 23 chr1 181287549 181287904 -61376449 - L1MA8 LINE L1 -647 5644 5296 464 200 38 56 chr1 181287909 181288069 -61376284 + L1MA8 LINE L1 6135 6291 0 1006 46 8 0 chr1 181289524 181289654 -61374699 + L1PA4 LINE L1 6022 6152 -3 25 0 0 0 chr1 181289654 181289679 -61374674 + AT_rich Low_complexity Low_complexity 1 25 0 1143 199 0 0 chr1 181289733 181289944 -61374409 + L1P LINE L1 4838 5048 -1098 1244 110 0 16 chr1 181290286 181290468 -61373885 + AluSg/x SINE Alu 122 300 -12 189 226 0 0 chr1 181291279 181291363 -61372990 + T-rich Low_complexity Low_complexity 1 84 0 42292 37 21 2 chr1 181291364 181297397 -61366956 - L1PA3 LINE L1 -3 6152 4 600 260 93 81 chr1 181297608 181297959 -61366394 - MLT2F LTR ERVL -175 488 129 2462 101 5 40 chr1 181297959 181298173 -61366180 - THE1B LTR MaLR 0 364 167 1952 112 34 17 chr1 181298173 181298467 -61365886 + AluY SINE Alu 1 299 -12 2462 101 5 40 chr1 181298467 181298629 -61365724 - THE1B LTR MaLR -197 167 1 600 260 93 81 chr1 181298629 181298719 -61365634 - MLT2F LTR ERVL -534 129 42 217 259 0 0 chr1 181299086 181299140 -61365213 + (TA)n Simple_repeat Simple_repeat 2 55 0 201 393 98 9 chr1 181300259 181300483 -61363870 + L3 LINE CR1 449 692 -885 210 71 0 0 chr1 181300614 181300642 -61363711 + (TA)n Simple_repeat Simple_repeat 1 28 0 23 68 0 0 chr1 181301645 181301689 -61362664 + AT_rich Low_complexity Low_complexity 1 44 0 231 36 0 0 chr1 181301851 181301879 -61362474 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 181303280 181303301 -61361052 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr1 181304162 181304188 -61360165 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 590 106 24 0 chr1 181304195 181304280 -61360073 - LTR19B LTR ERV1 -54 526 440 185 0 40 0 chr1 181304280 181304305 -61360048 + (TTA)n Simple_repeat Simple_repeat 2 27 0 18577 77 8 11 chr1 181304305 181307716 -61356637 - L1PA8 LINE L1 -16 6156 2752 450 290 39 39 chr1 181307819 181307974 -61356379 - MLT2E LTR ERVL -459 169 15 13584 33 2 1 chr1 181307976 181310466 -61353887 + L1PA3 LINE L1 3742 6237 0 2455 167 59 6 chr1 181311078 181311225 -61353128 - L1M2 LINE L1 -494 5806 5668 270 0 0 0 chr1 181311225 181311255 -61353098 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 279 0 0 0 chr1 181311254 181311285 -61353068 + (TA)n Simple_repeat Simple_repeat 2 32 0 2455 167 59 6 chr1 181311255 181311627 -61352726 - L1M2 LINE L1 -632 5668 5291 457 206 38 56 chr1 181311627 181311787 -61352566 + L1MA8 LINE L1 6135 6291 0 1006 46 8 0 chr1 181313242 181313372 -61350981 + L1PA4 LINE L1 6022 6152 -3 25 0 0 0 chr1 181313372 181313397 -61350956 + AT_rich Low_complexity Low_complexity 1 25 0 1143 199 0 0 chr1 181313451 181313662 -61350691 + L1P LINE L1 4838 5048 -1098 1244 110 0 16 chr1 181314004 181314186 -61350167 + AluSg/x SINE Alu 122 300 -12 189 154 0 0 chr1 181314997 181315036 -61349317 + T-rich Low_complexity Low_complexity 2 40 0 42165 39 21 2 chr1 181315058 181321113 -61343240 - L1PA3 LINE L1 0 6155 4 602 269 88 77 chr1 181321324 181321675 -61342678 - MLT2F LTR ERVL -175 488 129 2462 101 5 40 chr1 181321675 181321889 -61342464 - THE1B LTR MaLR 0 364 167 1930 116 34 17 chr1 181321889 181322183 -61342170 + AluY SINE Alu 1 299 -12 2462 101 5 40 chr1 181322183 181322345 -61342008 - THE1B LTR MaLR -197 167 1 602 269 88 77 chr1 181322345 181322435 -61341918 - MLT2F LTR ERVL -534 129 42 217 259 0 0 chr1 181322802 181322856 -61341497 + (TA)n Simple_repeat Simple_repeat 2 55 0 209 388 98 9 chr1 181323974 181324198 -61340155 + L3 LINE CR1 449 692 -885 210 71 0 0 chr1 181324330 181324358 -61339995 + (TA)n Simple_repeat Simple_repeat 1 28 0 23 68 0 0 chr1 181325359 181325403 -61338950 + AT_rich Low_complexity Low_complexity 1 44 0 231 36 0 0 chr1 181325565 181325593 -61338760 + (TG)n Simple_repeat Simple_repeat 1 28 0 2328 86 0 0 chr1 181326222 181326523 -61337830 + AluY SINE Alu 1 301 -10 365 286 59 39 chr1 181326860 181327269 -61337084 - L1M4 LINE L1 -2882 3264 2848 264 281 52 10 chr1 181327366 181327462 -61336891 - MIR SINE MIR 0 262 163 216 0 0 0 chr1 181327620 181327644 -61336709 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 21 57 0 0 chr1 181328191 181328226 -61336127 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chr1 181328314 181328363 -61335990 + AT_rich Low_complexity Low_complexity 1 49 0 26 30 0 0 chr1 181328409 181328442 -61335911 + AT_rich Low_complexity Low_complexity 1 33 0 419 123 0 14 chr1 181328452 181328525 -61335828 + (TA)n Simple_repeat Simple_repeat 1 72 0 1107 64 7 0 chr1 181328724 181328864 -61335489 - AluY SINE Alu -20 291 151 8686 107 12 1 chr1 181328897 181331027 -61333326 + L1PA8 LINE L1 4040 6163 -9 609 103 23 0 chr1 181331040 181331127 -61333226 + LTR19B LTR ERV1 438 526 -54 213 39 0 0 chr1 181331134 181331160 -61333193 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr1 181332022 181332043 -61332310 + AT_rich Low_complexity Low_complexity 1 21 0 3662 95 0 6 chr1 181334354 181334868 -61329485 - MER9 LTR ERVK 0 511 1 328 326 30 15 chr1 181335248 181335380 -61328973 - L2 LINE L2 0 3313 3180 752 306 63 129 chr1 181335425 181336666 -61327687 - L2 LINE L2 -266 3047 1890 347 159 0 58 chr1 181336674 181336743 -61327610 + L1MA7 LINE L1 6194 6258 -33 1307 231 120 40 chr1 181336743 181337097 -61327256 - MER44D DNA MER2_type -1882 605 143 304 20 41 20 chr1 181337097 181337146 -61327207 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 1307 231 120 40 chr1 181337146 181337290 -61327063 - MER44D DNA MER2_type -2344 143 12 180 311 33 0 chr1 181337675 181337736 -61326617 - L2 LINE L2 0 3313 3251 24 32 0 0 chr1 181338870 181338901 -61325452 + AT_rich Low_complexity Low_complexity 1 31 0 213 330 85 11 chr1 181339549 181339643 -61324710 + MIR3 SINE MIR 68 168 -40 1305 180 62 13 chr1 181340165 181340470 -61323883 + L1MC3 LINE L1 7459 7778 -7 209 208 0 0 chr1 181340865 181340913 -61323440 + (TA)n Simple_repeat Simple_repeat 2 49 0 285 29 0 0 chr1 181341024 181341058 -61323295 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 532 23 58 0 chr1 181341425 181341511 -61322842 + (TA)n Simple_repeat Simple_repeat 2 92 0 294 29 0 0 chr1 181342515 181342550 -61321803 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr1 181342554 181342577 -61321776 + AT_rich Low_complexity Low_complexity 1 23 0 288 347 88 8 chr1 181343628 181343867 -61320486 + L2 LINE L2 1242 1499 -1815 262 328 62 85 chr1 181343888 181344063 -61320290 + L2 LINE L2 1725 1890 -1424 1930 133 7 13 chr1 181344063 181344363 -61319990 + AluSx SINE Alu 1 298 -14 262 328 62 85 chr1 181344363 181344528 -61319825 + L2 LINE L2 1890 2057 -1257 213 121 0 0 chr1 181344938 181344971 -61319382 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 1928 148 3 3 chr1 181346005 181346310 -61318043 - AluSx SINE Alu -7 305 1 729 312 138 20 chr1 181346780 181347229 -61317124 + L2 LINE L2 2811 3312 -1 21 0 0 0 chr1 181347767 181347788 -61316565 + AT_rich Low_complexity Low_complexity 1 21 0 204 67 0 0 chr1 181348946 181348976 -61315377 + (A)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chr1 181349034 181349061 -61315292 + AT_rich Low_complexity Low_complexity 1 27 0 2573 52 0 3 chr1 181349966 181350276 -61314077 - AluY SINE Alu -2 309 1 6180 152 12 15 chr1 181350618 181351545 -61312808 - L1MA2 LINE L1 0 6304 5375 2189 127 8 36 chr1 181351545 181351931 -61312422 + THE1C LTR MaLR 1 375 0 6180 152 12 15 chr1 181351931 181352016 -61312337 - L1MA2 LINE L1 -929 5375 5291 252 0 0 0 chr1 181352016 181352044 -61312309 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6180 152 12 15 chr1 181352044 181352563 -61311790 - L1MA2 LINE L1 -1013 5291 4774 1577 157 15 0 chr1 181352712 181352986 -61311367 - L1PA16 LINE L1 -9 6157 5880 3135 142 22 8 chr1 181352989 181353524 -61310829 + L1PA16 LINE L1 5340 5882 -284 27 49 0 0 chr1 181354713 181354754 -61309599 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 181355942 181355963 -61308390 + AT_rich Low_complexity Low_complexity 1 21 0 1624 138 0 4 chr1 181356326 181356558 -61307795 + AluSx SINE Alu 1 231 -81 486 152 105 0 chr1 181356564 181356669 -61307684 + AluSg/x SINE Alu 184 299 -13 222 379 55 41 chr1 181356956 181357101 -61307252 - L2 LINE L2 0 3272 3126 35 78 0 0 chr1 181357953 181358030 -61306323 + AT_rich Low_complexity Low_complexity 1 77 0 267 79 0 0 chr1 181358351 181358389 -61305964 + (A)n Simple_repeat Simple_repeat 1 38 0 21 57 0 0 chr1 181358596 181358631 -61305722 + AT_rich Low_complexity Low_complexity 1 35 0 36 62 0 0 chr1 181358856 181358920 -61305433 + AT_rich Low_complexity Low_complexity 1 64 0 22336 174 37 36 chr1 181359017 181365405 -61298948 + L1PA10 LINE L1 10 6479 -4 23 33 0 0 chr1 181365437 181365467 -61298886 + AT_rich Low_complexity Low_complexity 1 30 0 306 305 81 38 chr1 181365560 181365770 -61298583 - L1ME LINE L1 -499 5667 5449 641 242 21 41 chr1 181365962 181366156 -61298197 + L2 LINE L2 1839 2028 -1286 22 0 0 0 chr1 181366157 181366179 -61298174 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr1 181366216 181366253 -61298100 + AT_rich Low_complexity Low_complexity 1 37 0 25 75 0 0 chr1 181366941 181366994 -61297359 + AT_rich Low_complexity Low_complexity 1 53 0 2180 71 6 56 chr1 181367357 181367679 -61296674 + AluY SINE Alu 1 306 -5 28 0 0 0 chr1 181368109 181368137 -61296216 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr1 181369806 181369864 -61294489 + AT_rich Low_complexity Low_complexity 1 58 0 627 324 127 50 chr1 181370049 181370552 -61293801 - MLT1G1 LTR MaLR -4 545 1 282 270 74 93 chr1 181370740 181370955 -61293398 - MLT1G1-int LTR MaLR -170 1201 991 672 238 75 4 chr1 181371088 181371328 -61293025 + L1ME LINE L1 732 988 -5082 28 0 0 0 chr1 181371480 181371508 -61292845 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 181371540 181371562 -61292791 + AT_rich Low_complexity Low_complexity 1 22 0 2282 108 0 9 chr1 181371955 181372270 -61292083 + AluSx SINE Alu 1 312 0 1690 341 102 26 chr1 181372410 181373805 -61290548 - L2 LINE L2 -124 3189 1683 650 275 74 25 chr1 181373805 181374129 -61290224 - L1ME1 LINE L1 -31 6135 5796 766 245 10 30 chr1 181374133 181374333 -61290020 + MLT1E LTR MaLR 396 591 -2 866 252 59 0 chr1 181374334 181374588 -61289765 - L1ME LINE L1 -774 5372 5104 2273 81 0 13 chr1 181375431 181375729 -61288624 + AluSc SINE Alu 1 294 -15 500 329 52 14 chr1 181376970 181377180 -61287173 - MIR SINE MIR -43 219 2 978 194 20 5 chr1 181377617 181377818 -61286535 - MER3 DNA MER1_type -4 205 2 1645 222 14 14 chr1 181378363 181378733 -61285620 + MLT1A2 LTR MaLR 1 370 -4 377 310 84 25 chr1 181379243 181379446 -61284907 + L1M4 LINE L1 3128 3342 -2804 519 281 34 86 chr1 181379662 181380046 -61284307 + L1M4 LINE L1 3614 3977 -2169 237 198 0 58 chr1 181380065 181380151 -61284202 + (TA)n Simple_repeat Simple_repeat 1 81 0 246 81 0 0 chr1 181380204 181380241 -61284112 + (TG)n Simple_repeat Simple_repeat 1 37 0 416 319 42 42 chr1 181380394 181380607 -61283746 + MLT1I LTR MaLR 98 310 -99 25 31 0 0 chr1 181381562 181381594 -61282759 + AT_rich Low_complexity Low_complexity 1 32 0 31 68 0 0 chr1 181383050 181383109 -61281244 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr1 181383506 181383536 -61280817 + AT_rich Low_complexity Low_complexity 1 30 0 2403 204 6 17 chr1 181383670 181384190 -61280163 - L1 LINE L1 -1156 4990 4477 568 240 54 60 chr1 181384189 181384506 -61279847 + L1ME2 LINE L1 2053 2367 -4029 * 782 286 50 35 chr1 181384642 181384771 -61279582 - L1MEc LINE L1 -4920 1476 1350 3212 137 67 0 chr1 181384771 181385290 -61279063 + MER41C LTR ERV1 1 554 0 782 286 50 35 chr1 181385290 181385643 -61278710 - L1MEc LINE L1 -5046 1350 987 836 325 43 38 chr1 181385746 181385948 -61278405 - L1MEc LINE L1 -5667 729 529 2097 121 0 0 chr1 181385948 181386265 -61278088 + AluSg SINE Alu 1 317 0 836 325 43 38 chr1 181386265 181386507 -61277846 - L1MEc LINE L1 -5867 529 282 2285 69 0 31 chr1 181386629 181386946 -61277407 - AluY SINE Alu -4 307 1 263 321 53 27 chr1 181386993 181387180 -61277173 + MLT1-int LTR MaLR 703 894 -477 1545 231 38 11 chr1 181387937 181388284 -61276069 + MLT1A1 LTR MaLR 3 358 -7 298 289 116 52 chr1 181388291 181388792 -61275561 - L1MCa LINE L1 -4967 1459 927 1845 145 0 20 chr1 181388820 181389124 -61275229 - AluSx SINE Alu -14 298 1 1242 249 133 94 chr1 181389146 181389761 -61274592 - MLT1E1 LTR MaLR -13 641 3 1823 254 37 64 chr1 181391531 181392785 -61271568 + L1ME1 LINE L1 4884 6163 -3 779 309 67 42 chr1 181392795 181393747 -61270606 + L1ME2 LINE L1 3908 4883 -1332 6052 182 23 40 chr1 181393757 181395488 -61268865 - L1M2 LINE L1 -642 5649 3941 1794 119 4 0 chr1 181395488 181395739 -61268614 - AluSx SINE Alu -60 252 1 6052 182 23 40 chr1 181395739 181395788 -61268565 - L1M2 LINE L1 -2350 3941 3893 1344 165 6 118 chr1 181395788 181396127 -61268226 + AluSx SINE Alu 1 301 -1 235 210 62 0 chr1 181396134 181396215 -61268138 + GA-rich Low_complexity Low_complexity 5 90 0 348 218 208 10 chr1 181396216 181396317 -61268036 - L1M2 LINE L1 -2244 3902 3782 712 114 9 0 chr1 181396327 181396432 -61267921 - AluSp/q SINE Alu -8 305 200 1204 188 45 4 chr1 181396435 181396701 -61267652 - L1M2 LINE L1 -2358 3788 3512 1717 270 65 46 chr1 181396717 181397631 -61266722 + L1ME2 LINE L1 5267 6199 -34 796 220 26 31 chr1 181397634 181397825 -61266528 - L1MC3 LINE L1 -1030 6755 6566 597 224 70 0 chr1 181397819 181397962 -61266391 - L1MC3 LINE L1 -2124 5661 5509 * 4775 226 50 10 chr1 181398082 181399251 -61265102 - L1MC3 LINE L1 -6 7779 6564 1486 229 51 17 chr1 181399251 181399322 -61265031 - L1MC3 LINE L1 -743 5403 5336 1607 107 0 9 chr1 181399322 181399547 -61264806 + AluSc SINE Alu 73 295 -14 1486 229 51 17 chr1 181399547 181400023 -61264330 - L1MC3 LINE L1 -810 5336 5089 1190 248 33 58 chr1 181400025 181400421 -61263932 - L1MCb LINE L1 -5657 388 3 422 183 135 96 chr1 181402933 181403141 -61261212 + MER69 DNA AcHobo 2096 2311 -215 246 167 0 0 chr1 181403168 181403204 -61261149 - tRNA-Lys-AAG tRNA tRNA -40 36 1 778 201 13 0 chr1 181403243 181403402 -61260951 - L1MB1 LINE L1 -166 6002 5842 232 250 48 0 chr1 181403398 181403482 -61260871 + L1MB1 LINE L1 6079 6166 -2 * 291 250 111 17 chr1 181403521 181403693 -61260660 + MER69 DNA AcHobo 2329 2516 -10 2435 114 0 14 chr1 181404130 181404490 -61259863 + THE1A LTR MaLR 1 355 0 1677 111 4 0 chr1 181404678 181404903 -61259450 + AluSx SINE Alu 27 252 -60 1266 156 4 238 chr1 181404903 181405597 -61258756 + L1P LINE L1 4691 5222 -924 485 196 0 10 chr1 181405606 181405708 -61258645 - L1 LINE L1 -1903 4243 4143 2853 162 8 0 chr1 181405727 181406554 -61257799 + L1PA14 LINE L1 4873 5706 -455 2086 104 179 148 chr1 181406611 181407260 -61257093 - LTR12 LTR ERV1 -133 2023 57 242 250 0 0 chr1 181407264 181407316 -61257037 - LTR30 LTR ERV1 -670 52 1 1828 142 0 13 chr1 181407316 181407618 -61256735 + L1PA14 LINE L1 5733 6030 -131 21 36 0 0 chr1 181407970 181407998 -61256355 + AT_rich Low_complexity Low_complexity 1 28 0 333 127 96 0 chr1 181408452 181408765 -61255588 + (TA)n Simple_repeat Simple_repeat 1 343 0 340 157 48 30 chr1 181408769 181409107 -61255246 + (TATAA)n Simple_repeat Simple_repeat 1 344 0 * 400 155 27 64 chr1 181409024 181409253 -61255100 + (TTATA)n Simple_repeat Simple_repeat 1 220 0 198 0 0 0 chr1 181409264 181409286 -61255067 + (TA)n Simple_repeat Simple_repeat 2 23 0 259 288 37 135 chr1 181409504 181409830 -61254523 - L2 LINE L2 -24 3289 2996 1095 326 46 57 chr1 181410083 181410768 -61253585 - L2 LINE L2 -329 2984 2304 24 32 0 0 chr1 181411138 181411169 -61253184 + AT_rich Low_complexity Low_complexity 1 31 0 2311 168 34 2 chr1 181411435 181411846 -61252507 - MSTB LTR MaLR -2 424 1 244 187 13 27 chr1 181412140 181412215 -61252138 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 1820 112 0 73 chr1 181412303 181412633 -61251720 + AluSx SINE Alu 1 308 0 4906 174 37 25 chr1 181414936 181416284 -61248069 + L1MA8 LINE L1 4910 6290 -1 736 156 19 2 chr1 181416911 181417053 -61247300 + L1M2 LINE L1 5314 5457 -855 260 309 21 11 chr1 181417196 181417290 -61247063 + L2 LINE L2 3192 3286 -27 21 71 0 0 chr1 181417379 181417421 -61246932 + AT_rich Low_complexity Low_complexity 1 42 0 235 88 88 0 chr1 181417564 181417655 -61246698 + (TA)n Simple_repeat Simple_repeat 2 100 0 26 0 0 0 chr1 181417760 181417786 -61246567 + AT_rich Low_complexity Low_complexity 1 26 0 1375 248 82 32 chr1 181418039 181418089 -61246264 - MLT1C LTR MaLR 0 467 421 1768 174 87 53 chr1 181418089 181418503 -61245850 - MSTA LTR MaLR 0 428 1 1375 248 82 32 chr1 181418503 181418892 -61245461 - MLT1C LTR MaLR -46 421 6 311 205 25 19 chr1 181418910 181418921 -61245432 + (TA)n Simple_repeat Simple_repeat 1 10 -152 261 0 0 0 chr1 181418921 181418950 -61245403 + (CA)n Simple_repeat Simple_repeat 2 30 0 311 205 25 19 chr1 181418950 181419099 -61245254 + (TA)n Simple_repeat Simple_repeat 10 162 0 183 42 0 0 chr1 181419235 181419259 -61245094 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1228 108 11 0 chr1 181421498 181421674 -61242679 - AluSc SINE Alu -3 306 129 288 130 0 0 chr1 181421872 181421918 -61242435 + (TA)n Simple_repeat Simple_repeat 1 46 0 1913 191 49 32 chr1 181423997 181424467 -61239886 - L1MA7 LINE L1 -6 6285 5808 258 136 0 0 chr1 181426124 181426168 -61238185 + (TA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr1 181426167 181426188 -61238165 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 351 295 30 55 chr1 181426213 181426674 -61237679 + L1MEd LINE L1 1067 1716 -4548 398 269 101 52 chr1 181426705 181427013 -61237340 + L1MEd LINE L1 1796 2118 -4192 189 0 0 0 chr1 181427567 181427588 -61236765 + (ATG)n Simple_repeat Simple_repeat 3 23 0 21 0 0 0 chr1 181427690 181427711 -61236642 + AT_rich Low_complexity Low_complexity 1 21 0 2557 235 55 41 chr1 181427872 181428744 -61235609 - Charlie1 DNA MER1_type -5 2756 1873 462 345 55 35 chr1 181428761 181428925 -61235428 + L2 LINE L2 2379 2538 -776 1782 130 0 0 chr1 181428925 181429172 -61235181 - AluSx SINE Alu -9 303 57 462 345 55 35 chr1 181429172 181429352 -61235001 + L2 LINE L2 2538 2730 -584 262 280 93 0 chr1 181429461 181429568 -61234785 + LTR41 LTR ERVL 89 205 -568 777 217 23 17 chr1 181429771 181429946 -61234407 + LTR41 LTR ERVL 585 760 -13 333 333 25 0 chr1 181429958 181430078 -61234275 + L2 LINE L2 2787 2909 -405 408 330 57 28 chr1 181430133 181430415 -61233938 + L2 LINE L2 3024 3313 0 554 311 48 24 chr1 181430465 181430716 -61233637 + MIR SINE MIR 3 259 -3 2098 122 0 3 chr1 181430869 181431164 -61233189 + AluSp SINE Alu 1 294 -19 198 143 0 0 chr1 181431347 181431382 -61232971 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1425 208 0 34 chr1 181432145 181432438 -61231915 + AluJo SINE Alu 1 283 -29 720 35 0 0 chr1 181432438 181432525 -61231828 + (CATA)n Simple_repeat Simple_repeat 2 88 0 205 130 0 37 chr1 181433144 181433198 -61231155 + (CATA)n Simple_repeat Simple_repeat 4 55 0 2163 135 25 6 chr1 181433691 181434047 -61230306 + THE1B LTR MaLR 1 363 -1 229 204 0 0 chr1 181434213 181434257 -61230096 + (TG)n Simple_repeat Simple_repeat 2 45 0 1756 164 16 0 chr1 181434457 181434767 -61229586 - L1M3 LINE L1 -517 5817 5503 2168 176 48 7 chr1 181434767 181435226 -61229127 + L1MA10 LINE L1 5854 6332 -2 26 30 0 0 chr1 181436414 181436447 -61227906 + AT_rich Low_complexity Low_complexity 1 33 0 252 233 248 16 chr1 181437478 181437527 -61226826 + L1MA10 LINE L1 6169 6205 -129 234 0 0 0 chr1 181437527 181437553 -61226800 + (TG)n Simple_repeat Simple_repeat 1 26 0 252 233 248 16 chr1 181437553 181437632 -61226721 + L1MA10 LINE L1 6205 6327 -7 1396 166 4 4 chr1 181437972 181438213 -61226140 + AluSq SINE Alu 68 308 -5 345 102 0 34 chr1 181438265 181438324 -61226029 - MLT2D LTR ERVL 0 520 464 201 208 0 21 chr1 181438329 181438377 -61225976 + (TA)n Simple_repeat Simple_repeat 1 47 0 249 33 0 0 chr1 181438377 181438407 -61225946 + (TG)n Simple_repeat Simple_repeat 1 30 0 1186 213 15 92 chr1 181438417 181438806 -61225547 - MLT2D LTR ERVL -55 359 1 229 171 0 0 chr1 181439413 181439454 -61224899 + L1MEc LINE L1 1674 1714 -4682 276 195 46 23 chr1 181439648 181439735 -61224618 - L1MEc LINE L1 -4723 1998 1910 207 188 0 0 chr1 181439735 181439783 -61224570 + (TG)n Simple_repeat Simple_repeat 2 49 0 225 282 52 82 chr1 181439839 181440071 -61224282 - L1MEc LINE L1 -4697 1843 1605 1249 176 246 14 chr1 181440071 181440417 -61223936 + MSTB LTR MaLR 1 426 0 8487 136 38 59 chr1 181440419 181442031 -61222322 + MSTA-int LTR MaLR 3 1580 0 1575 156 203 14 chr1 181442031 181442391 -61221962 + MSTA LTR MaLR 1 428 0 225 282 52 82 chr1 181442391 181442445 -61221908 - L1MEc LINE L1 -4934 1606 1562 27 62 0 0 chr1 181444157 181444205 -61220148 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr1 181445233 181445258 -61219095 + AT_rich Low_complexity Low_complexity 1 25 0 642 282 43 28 chr1 181445559 181445814 -61218539 - MLT1G1 LTR MaLR -336 259 1 687 150 21 50 chr1 181446085 181446225 -61218128 - FRAM SINE Alu -16 160 25 341 109 0 18 chr1 181446294 181446349 -61218004 - MLT2A1 LTR ERVL -1 452 399 231 164 30 15 chr1 181446350 181446417 -61217936 + (TA)n Simple_repeat Simple_repeat 2 69 0 23 78 0 0 chr1 181446423 181446474 -61217879 + AT_rich Low_complexity Low_complexity 1 51 0 2604 88 52 3 chr1 181446591 181446975 -61217378 - MLT2A1 LTR ERVL -40 404 2 2222 109 0 0 chr1 181447168 181447461 -61216892 - AluSc SINE Alu -16 293 1 432 276 53 13 chr1 181447969 181448121 -61216232 - LTR16A LTR ERVL -6 444 287 422 316 65 13 chr1 181448224 181448379 -61215974 - LTR16A LTR ERVL -174 276 114 1793 108 48 0 chr1 181448571 181448822 -61215531 - AluSx SINE Alu -44 268 6 885 173 0 29 chr1 181448823 181448996 -61215357 - FRAM SINE Alu 0 176 9 1692 142 0 0 chr1 181449111 181449393 -61214960 - AluSx SINE Alu 0 319 38 25 0 0 0 chr1 181450414 181450439 -61213914 + AT_rich Low_complexity Low_complexity 1 25 0 248 226 0 32 chr1 181450746 181450808 -61213545 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 657 247 60 11 chr1 181451315 181451497 -61212856 - MIR SINE MIR -4 258 68 255 288 41 0 chr1 181452650 181452723 -61211630 - MIR SINE MIR -66 196 121 2610 257 17 6 chr1 181453000 181453487 -61210866 - MER63C DNA MER1_type -135 925 428 288 0 0 0 chr1 181453487 181453519 -61210834 + (CA)n Simple_repeat Simple_repeat 1 32 0 2610 257 17 6 chr1 181453519 181453688 -61210665 - MER63C DNA MER1_type -632 428 262 966 142 166 0 chr1 181453778 181453989 -61210364 - MER63C DNA MER1_type -684 246 1 1472 263 67 48 chr1 181454209 181454790 -61209563 + MLT1E LTR MaLR 2 593 0 1353 250 90 44 chr1 181455288 181455754 -61208599 - MLT2B1 LTR ERVL -20 534 1 1674 134 16 0 chr1 181456280 181456533 -61207820 - MER7A DNA MER2_type -91 255 1 293 0 27 0 chr1 181456570 181456607 -61207746 + (TA)n Simple_repeat Simple_repeat 1 38 0 1499 164 79 21 chr1 181457990 181458270 -61206083 - AluJo SINE Alu -16 296 1 534 276 117 9 chr1 181458568 181458782 -61205571 - MIR SINE MIR 0 262 26 184 365 93 0 chr1 181459403 181459510 -61204843 - L2 LINE L2 0 3272 3156 32 26 0 0 chr1 181459544 181459583 -61204770 + AT_rich Low_complexity Low_complexity 1 39 0 1974 123 32 0 chr1 181459583 181459867 -61204486 + AluSg SINE Alu 1 293 -17 385 258 172 0 chr1 181459938 181460089 -61204264 + MIR SINE MIR 85 261 -1 276 30 0 0 chr1 181460875 181460908 -61203445 + (TG)n Simple_repeat Simple_repeat 2 34 0 221 165 24 24 chr1 181461184 181461269 -61203084 + (TA)n Simple_repeat Simple_repeat 1 85 0 701 282 12 6 chr1 181461723 181461893 -61202460 - MER76 LTR ERV -517 171 1 1967 267 36 19 chr1 181461893 181463176 -61201177 + L1M4 LINE L1 3307 4699 -1447 221 153 0 17 chr1 181463218 181463277 -61201076 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 513 221 40 40 chr1 181463297 181463446 -61200907 - MLT1A1 LTR MaLR -11 363 215 1030 244 16 16 chr1 181463461 181463715 -61200638 - MLT1A1 LTR MaLR -111 254 1 22 0 0 0 chr1 181463837 181463859 -61200494 + AT_rich Low_complexity Low_complexity 1 22 0 25 59 0 29 chr1 181463890 181463906 -61200447 + AT_rich Low_complexity Low_complexity 1 16 -50 2066 132 14 22 chr1 181463906 181464269 -61200084 + L1PA16 LINE L1 5802 6161 -5 25 59 0 29 chr1 181464269 181464320 -61200033 + AT_rich Low_complexity Low_complexity 16 66 0 2081 72 20 7 chr1 181464381 181464830 -61199523 - L1P3 LINE L1 -636 5536 5084 2925 85 0 0 chr1 181464830 181465229 -61199124 + L1PA8 LINE L1 5772 6170 -2 22 35 0 0 chr1 181467105 181467134 -61197219 + AT_rich Low_complexity Low_complexity 1 29 0 4037 78 11 7 chr1 181467874 181468448 -61195905 + L1PA8 LINE L1 5593 6168 -4 27 0 0 0 chr1 181471133 181471160 -61193193 + AT_rich Low_complexity Low_complexity 1 27 0 914 195 54 0 chr1 181471502 181471687 -61192666 - L1PB4 LINE L1 -141 6015 5821 2179 122 3 0 chr1 181471778 181472090 -61192263 - AluSq SINE Alu 0 313 1 23 33 0 0 chr1 181472481 181472511 -61191842 + AT_rich Low_complexity Low_complexity 1 30 0 566 305 47 42 chr1 181472591 181472827 -61191526 - MIR SINE MIR -1 261 25 46 62 0 0 chr1 181473374 181473455 -61190898 + AT_rich Low_complexity Low_complexity 1 81 0 1185 228 63 0 chr1 181473499 181473767 -61190586 + L1MC1 LINE L1 6048 6332 -1 263 326 124 0 chr1 181473978 181474067 -61190286 + L2 LINE L2 3208 3307 -6 997 231 80 40 chr1 181474137 181474510 -61189843 + MLT1B LTR MaLR 3 390 0 2946 237 21 7 chr1 181474511 181475232 -61189121 + MLT1B-int LTR MaLR 2 732 -639 273 179 18 0 chr1 181475368 181475424 -61188929 + MLT1B-int LTR MaLR 698 754 -981 524 334 87 68 chr1 181475513 181476314 -61188039 - L1MEd LINE L1 -4826 1303 494 22 88 0 0 chr1 181476498 181476555 -61187798 + AT_rich Low_complexity Low_complexity 1 57 0 3437 168 19 16 chr1 181478026 181478710 -61185643 - L1MB2 LINE L1 -17 6154 5469 25 51 0 0 chr1 181478803 181478842 -61185511 + AT_rich Low_complexity Low_complexity 1 39 0 1507 196 35 78 chr1 181480045 181480478 -61183875 + MLT2D LTR ERVL 1 414 0 1969 122 37 69 chr1 181480482 181480534 -61183819 - THE1B LTR MaLR 0 364 312 2127 124 0 3 chr1 181480534 181480833 -61183520 - AluSg1 SINE Alu -11 298 1 1969 122 37 69 chr1 181480833 181481156 -61183197 - THE1B LTR MaLR -52 312 1 226 161 0 36 chr1 181481540 181481596 -61182757 + LTR66 LTR ERVL 385 438 -172 * 269 138 17 17 chr1 181481558 181481616 -61182737 - LTR66 LTR ERVL -172 438 381 273 58 87 0 chr1 181481644 181481713 -61182640 + (TA)n Simple_repeat Simple_repeat 2 76 0 409 203 0 0 chr1 181481713 181481787 -61182566 - FRAM SINE Alu -31 145 72 638 73 57 0 chr1 181483000 181483123 -61181230 + (TA)n Simple_repeat Simple_repeat 1 130 0 201 74 0 0 chr1 181483122 181483149 -61181204 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 423 292 195 11 chr1 181483351 181483536 -61180817 - MIR SINE MIR -31 231 13 3045 100 23 5 chr1 181483633 181484074 -61180279 + MLT2A2 LTR ERVL 5 453 0 772 354 21 53 chr1 181484853 181485538 -61178815 + L2 LINE L2 2527 3187 -126 1286 206 111 3 chr1 181486038 181486344 -61178009 - MER44D DNA MER2_type 0 609 1 249 309 25 0 chr1 181486806 181486887 -61177466 + MIR SINE MIR 59 141 -121 243 200 38 12 chr1 181486956 181487036 -61177317 + (TA)n Simple_repeat Simple_repeat 1 82 0 2211 171 50 11 chr1 181487154 181487616 -61176737 + L1MC2 LINE L1 5854 6333 -11 1836 195 31 10 chr1 181487990 181488374 -61175979 - MSTD LTR MaLR -4 392 1 195 100 0 0 chr1 181489057 181489087 -61175266 + (TG)n Simple_repeat Simple_repeat 2 31 0 26 50 0 0 chr1 181489945 181489985 -61174368 + AT_rich Low_complexity Low_complexity 1 40 0 3590 113 73 24 chr1 181490240 181491318 -61173035 - MER11A LTR ERVK 0 1236 1 2024 124 14 0 chr1 181491580 181491870 -61172483 - AluY SINE Alu -17 294 1 1179 299 99 20 chr1 181492001 181492929 -61171424 + L1ME3A LINE L1 4310 5310 -836 215 125 25 0 chr1 181493019 181493059 -61171294 + (TA)n Simple_repeat Simple_repeat 2 42 0 1154 266 127 49 chr1 181493059 181493241 -61171112 + L1ME3A LINE L1 5360 5526 -644 1938 147 23 0 chr1 181493241 181493541 -61170812 - AluSx SINE Alu -5 307 1 1154 266 127 49 chr1 181493541 181494075 -61170278 + L1ME3A LINE L1 5526 6132 -38 307 301 11 0 chr1 181494547 181494640 -61169713 - MER63A DNA MER1_type 0 210 117 207 0 0 0 chr1 181495831 181495854 -61168499 + (TAAAAA)n Simple_repeat Simple_repeat 4 26 0 198 0 0 0 chr1 181496017 181496039 -61168314 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3624 62 2 8 chr1 181496064 181496534 -61167819 + L1PA4 LINE L1 5666 6132 -23 2040 145 0 6 chr1 181497018 181497329 -61167024 + AluSc SINE Alu 1 309 0 406 283 154 34 chr1 181497725 181498167 -61166186 + L1M4 LINE L1 2813 3307 -2839 35 41 0 0 chr1 181498587 181498636 -61165717 + AT_rich Low_complexity Low_complexity 1 49 0 198 0 0 0 chr1 181498875 181498897 -61165456 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 982 206 43 106 chr1 181498946 181499314 -61165039 + MER2 DNA MER2_type 1 345 0 564 42 0 0 chr1 181499321 181499392 -61164961 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1291 305 91 29 chr1 181499983 181500665 -61163688 + L2 LINE L2 1492 2215 -1099 29 0 0 0 chr1 181500757 181500786 -61163567 + AT_rich Low_complexity Low_complexity 1 29 0 33 66 0 0 chr1 181502169 181502230 -61162123 + AT_rich Low_complexity Low_complexity 1 61 0 393 313 143 22 chr1 181502497 181502721 -61161632 + MIR SINE MIR 2 252 -10 1793 279 45 20 chr1 181503095 181503679 -61160674 + LTR68 LTR ERV1 1 598 -142 440 242 161 7 chr1 181504008 181504157 -61160196 - MLT1F1 LTR MaLR -27 540 369 1927 212 66 26 chr1 181504706 181505235 -61159118 + MER44D DNA MER2_type 1 605 0 24 0 0 0 chr1 181505667 181505691 -61158662 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 181506667 181506689 -61157664 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 181507121 181507150 -61157203 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 181507804 181507826 -61156527 + AT_rich Low_complexity Low_complexity 1 22 0 38 51 0 0 chr1 181508028 181508087 -61156266 + AT_rich Low_complexity Low_complexity 1 59 0 1591 196 119 26 chr1 181508540 181508998 -61155355 + LTR10A LTR ERV1 1 548 -61 32 67 0 0 chr1 181509253 181509313 -61155040 + AT_rich Low_complexity Low_complexity 1 60 0 459 154 0 0 chr1 181509457 181509535 -61154818 + L1MA3 LINE L1 5864 5941 -364 2208 105 19 0 chr1 181509568 181509892 -61154461 - L1PA10 LINE L1 -5 6163 5834 2164 78 7 48 chr1 181511466 181511775 -61152578 - AluY SINE Alu -15 296 1 228 266 62 71 chr1 181512387 181512500 -61151853 + L2 LINE L2 719 830 -2484 465 114 127 0 chr1 181512515 181512594 -61151759 - 5S rRNA rRNA -31 90 2 543 345 113 72 chr1 181512602 181514286 -61150067 + L2 LINE L2 967 2719 -595 3215 180 20 2 chr1 181514818 181515408 -61148945 + Tigger1 DNA MER2_type 1 601 -1817 363 154 0 31 chr1 181515433 181515498 -61148855 - THE1C LTR MaLR -312 63 1 2652 164 12 18 chr1 181515500 181516006 -61148347 + L1PA16 LINE L1 5664 6166 0 36 70 0 0 chr1 181516214 181516285 -61148068 + AT_rich Low_complexity Low_complexity 1 71 0 24 32 0 0 chr1 181516310 181516341 -61148012 + AT_rich Low_complexity Low_complexity 1 31 0 646 274 113 0 chr1 181516359 181516545 -61147808 - MER20 DNA MER1_type -12 207 1 327 324 55 41 chr1 181516567 181516712 -61147641 + MIR3 SINE MIR 40 186 -22 263 120 0 20 chr1 181516780 181516830 -61147523 + (TA)n Simple_repeat Simple_repeat 2 50 0 1599 198 18 18 chr1 181516864 181517193 -61147160 - MER47A DNA MER2_type -36 330 2 24 32 0 0 chr1 181517353 181517384 -61146969 + AT_rich Low_complexity Low_complexity 1 31 0 404 370 5 28 chr1 181517962 181518173 -61146180 + MIR SINE MIR 52 257 -5 458 249 138 22 chr1 181518228 181518409 -61145944 + MIR SINE MIR 61 262 0 485 310 183 0 chr1 181518541 181518809 -61145544 + L2 LINE L2 2997 3313 0 1040 168 89 89 chr1 181518925 181519216 -61145137 - AluJo SINE Alu -9 293 3 22 35 0 0 chr1 181520069 181520098 -61144255 + AT_rich Low_complexity Low_complexity 1 29 0 28 79 0 0 chr1 181521145 181521208 -61143145 + AT_rich Low_complexity Low_complexity 1 63 0 609 130 0 0 chr1 181521209 181521301 -61143052 + FLAM_C SINE Alu 36 127 -16 22 94 0 0 chr1 181521301 181521365 -61142988 + AT_rich Low_complexity Low_complexity 1 64 0 1544 249 117 25 chr1 181523201 181523791 -61140562 + LTR48B LTR ERV1 1 644 0 2498 167 20 18 chr1 181524337 181524664 -61139689 + L1M4c LINE L1 18 348 -6036 2522 42 7 0 chr1 181524664 181524971 -61139382 - AluY SINE Alu -1 310 2 2498 167 20 18 chr1 181524971 181525093 -61139260 + L1M4c LINE L1 348 468 -5916 1436 237 81 2 chr1 181525233 181525643 -61138710 + L1ME1 LINE L1 5448 5889 -277 225 0 0 0 chr1 181529625 181529650 -61134703 + (CA)n Simple_repeat Simple_repeat 2 26 0 1667 203 41 35 chr1 181530002 181530336 -61134017 + MSTD LTR MaLR 1 339 -57 198 0 0 0 chr1 181530336 181530358 -61133995 + (TA)n Simple_repeat Simple_repeat 2 23 0 1667 203 41 35 chr1 181530358 181530417 -61133936 + MSTD LTR MaLR 339 396 0 24 53 0 0 chr1 181530645 181530683 -61133670 + AT_rich Low_complexity Low_complexity 1 38 0 325 321 64 37 chr1 181530856 181531043 -61133310 + L1M4c LINE L1 1267 1458 -4914 522 312 75 59 chr1 181531459 181531847 -61132506 + MLT1L LTR MaLR 1 394 -221 563 135 23 10 chr1 181532613 181532727 -61131626 - LTR56 LTR ERV1 -23 422 320 2303 111 11 35 chr1 181532735 181533112 -61131241 - L1PB1 LINE L1 -1 6150 5783 521 75 8 50 chr1 181533113 181533233 -61131120 + (TA)n Simple_repeat Simple_repeat 1 115 0 4116 187 6 2 chr1 181533238 181534633 -61129720 - L1PB1 LINE L1 -360 5791 4393 269 214 9 0 chr1 181534900 181534960 -61129393 - MLT1F LTR MaLR -16 526 470 331 302 10 10 chr1 181535151 181535247 -61129106 - MLT1H LTR MaLR -393 156 61 342 317 42 0 chr1 181535297 181535417 -61128936 + L1M4 LINE L1 4502 4626 -1520 1284 237 46 3 chr1 181535666 181535970 -61128383 + MLT1-int LTR MaLR 608 924 -447 288 77 0 0 chr1 181536411 181536450 -61127903 + (TTATA)n Simple_repeat Simple_repeat 3 41 0 261 283 214 23 chr1 181536476 181536649 -61127704 + MIR SINE MIR 2 207 -55 25 31 0 0 chr1 181538016 181538048 -61126305 + AT_rich Low_complexity Low_complexity 1 32 0 1079 233 44 12 chr1 181538491 181538740 -61125613 + MER76 LTR ERV 1 257 -431 889 189 66 10 chr1 181538740 181538936 -61125417 + MSTA LTR MaLR 1 207 -221 * 1661 148 57 13 chr1 181538918 181539216 -61125137 + MSTA LTR MaLR 118 428 0 757 256 12 54 chr1 181539216 181539458 -61124895 + MER76 LTR ERV 253 484 -204 394 188 0 25 chr1 181539527 181539607 -61124746 + MER76 LTR ERV 611 688 0 416 281 172 15 chr1 181539693 181539896 -61124457 - LTR33 LTR ERVL -167 354 120 225 342 114 9 chr1 181540362 181540476 -61123877 + L2 LINE L2 2936 3061 -211 928 66 0 0 chr1 181540727 181540848 -61123505 - AluY SINE Alu -16 295 175 34 42 0 0 chr1 181542584 181542632 -61121721 + AT_rich Low_complexity Low_complexity 1 48 0 980 168 0 10 chr1 181542697 181542900 -61121453 + AluSg/x SINE Alu 112 312 0 414 156 59 104 chr1 181542902 181543037 -61121316 + AluSp SINE Alu 138 266 -47 551 188 26 0 chr1 181543037 181543154 -61121199 - AluSq/x SINE Alu -192 120 1 2258 37 0 0 chr1 181543162 181543431 -61120922 - AluY SINE Alu -4 307 39 315 238 113 0 chr1 181543438 181543518 -61120835 - MER2 DNA MER2_type -256 89 1 1385 186 7 0 chr1 181543541 181543821 -61120532 + AluSx SINE Alu 2 307 0 217 0 0 0 chr1 181543821 181543845 -61120508 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 29 28 0 0 chr1 181544313 181544349 -61120004 + AT_rich Low_complexity Low_complexity 1 36 0 1104 118 49 0 chr1 181544383 181544586 -61119767 + L1MA7 LINE L1 6077 6289 -2 25 0 0 0 chr1 181544987 181545012 -61119341 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 181545125 181545147 -61119206 + AT_rich Low_complexity Low_complexity 1 22 0 383 215 0 9 chr1 181545576 181545683 -61118670 + CT-rich Low_complexity Low_complexity 3 108 0 27 0 0 0 chr1 181546127 181546154 -61118199 + AT_rich Low_complexity Low_complexity 1 27 0 324 306 206 9 chr1 181546154 181546373 -61117980 - L1ME3A LINE L1 -263 5907 5646 237 265 59 0 chr1 181546615 181546683 -61117670 - L1ME3A LINE L1 -724 5460 5389 2102 105 36 10 chr1 181546965 181547270 -61117083 + AluSp SINE Alu 1 313 0 304 290 76 45 chr1 181547286 181547661 -61116692 - L1ME3A LINE L1 -1089 5057 4673 220 279 76 0 chr1 181548434 181548513 -61115840 - L2 LINE L2 0 3272 3188 1906 105 0 0 chr1 181549079 181549347 -61115006 + AluSc SINE Alu 32 299 0 226 167 33 0 chr1 181549833 181549893 -61114460 + GA-rich Low_complexity Low_complexity 3 64 0 402 57 0 0 chr1 181550116 181550169 -61114184 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 419 0 0 chr1 181550528 181550614 -61113739 + L2 LINE L2 3184 3269 -3 21 57 0 0 chr1 181550623 181550658 -61113695 + AT_rich Low_complexity Low_complexity 1 35 0 227 214 18 0 chr1 181551340 181551396 -61112957 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 31 68 0 0 chr1 181551652 181551711 -61112642 + AT_rich Low_complexity Low_complexity 1 59 0 1754 174 40 3 chr1 181551721 181552049 -61112304 - MER2 DNA MER2_type -4 340 1 23 97 0 0 chr1 181552199 181552271 -61112082 + AT_rich Low_complexity Low_complexity 1 72 0 1632 192 32 8 chr1 181552368 181552721 -61111632 + MER47B DNA MER2_type 11 418 0 2455 44 0 41 chr1 181553774 181554094 -61110259 + AluY SINE Alu 1 307 -4 1846 142 7 108 chr1 181554130 181554546 -61109807 + Tigger2a DNA MER2_type 1 374 -60 2241 303 67 11 chr1 181554555 181555289 -61109064 + L1PA16 LINE L1 2 776 -6011 13391 229 25 22 chr1 181555347 181556406 -61107947 + L1PA16 LINE L1 1319 2374 -4443 333 0 0 0 chr1 181556406 181556443 -61107910 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 13391 229 25 22 chr1 181556443 181560833 -61103520 + L1PA16 LINE L1 2374 6817 0 342 105 18 0 chr1 181561013 181561070 -61103283 + L1PA16 LINE L1 6102 6159 -7 358 228 25 0 chr1 181561070 181561149 -61103204 + Tigger2a DNA MER2_type 354 434 0 740 292 32 80 chr1 181561170 181561547 -61102806 - MER92A LTR ERV1 -53 359 1 2341 245 36 29 chr1 181561548 181562298 -61102055 + L1MC4a LINE L1 6548 7287 -521 26 0 0 0 chr1 181562490 181562516 -61101837 + AT_rich Low_complexity Low_complexity 1 26 0 352 177 19 57 chr1 181563061 181563206 -61101147 - AluSp/q SINE Alu -2 301 232 797 139 4 30 chr1 181563415 181563442 -61100911 + L1P1 LINE L1 5698 5724 -397 500 0 0 16 chr1 181563442 181563506 -61100847 - L1PA3 LINE L1 -1 6154 6092 797 139 4 30 chr1 181563506 181563611 -61100742 + L1P1 LINE L1 5724 5823 -298 1508 108 5 5 chr1 181563875 181564098 -61100255 - pTR5 LTR ERV1 -2046 392 170 275 245 41 31 chr1 181564099 181564197 -61100156 - LTR30 LTR ERV1 -80 642 544 4234 134 61 75 chr1 181564201 181565200 -61099153 - pTR5 LTR ERV1 -417 2021 744 22 56 0 0 chr1 181566359 181566395 -61097958 + AT_rich Low_complexity Low_complexity 1 36 0 746 264 28 5 chr1 181566499 181566711 -61097642 + MER20 DNA MER1_type 2 218 -1 2047 143 34 6 chr1 181567366 181567717 -61096636 + MER46B DNA MER2_type 1 236 0 2398 75 3 0 chr1 181567864 181568159 -61096194 - AluY SINE Alu -15 296 1 2513 65 30 12 chr1 181568258 181568597 -61095756 + MER4E LTR ERV1 1 345 -421 825 110 0 0 chr1 181568597 181568706 -61095647 + AluSg/x SINE Alu 176 284 -26 3179 79 2 5 chr1 181568723 181569141 -61095212 + MER4E LTR ERV1 350 766 0 247 336 129 14 chr1 181569178 181569318 -61095035 - MIR SINE MIR -59 203 48 626 288 38 20 chr1 181569603 181569907 -61094446 - MER110A LTR ERV1 -2 466 170 319 200 62 0 chr1 181569981 181570061 -61094292 - MER110A LTR ERV1 -303 165 81 7029 60 0 6 chr1 181570466 181572044 -61092309 - L1PA7 LINE L1 -3 6151 4578 1822 192 25 51 chr1 181572045 181572184 -61092169 - L1M1 LINE L1 -743 6822 6681 1791 127 0 0 chr1 181572184 181572429 -61091924 - AluSg SINE Alu -63 247 3 1822 192 25 51 chr1 181572429 181572850 -61091503 - L1M1 LINE L1 -884 6681 6325 7896 186 32 21 chr1 181572857 181575498 -61088855 - L1PA14 LINE L1 -4 6157 3488 919 196 20 60 chr1 181575501 181575751 -61088602 - L1M1 LINE L1 -1242 6323 6084 * 3533 247 53 16 chr1 181575742 181576720 -61087633 - L1M1 LINE L1 -6551 1014 1 1152 294 75 6 chr1 181576721 181577215 -61087138 + L1MC4 LINE L1 7378 7905 -137 30 0 0 0 chr1 181577841 181577871 -61086482 + AT_rich Low_complexity Low_complexity 1 30 0 1982 136 3 0 chr1 181578809 181579095 -61085258 + AluSx SINE Alu 10 296 -16 190 283 75 0 chr1 181579591 181579644 -61084709 + MIR SINE MIR 120 176 -86 853 298 90 43 chr1 181580159 181580673 -61083680 + MLT1H LTR MaLR 7 549 0 227 331 107 57 chr1 181581875 181582136 -61082217 + L3 LINE CR1 1095 1374 -203 2314 95 0 0 chr1 181582136 181582430 -61081923 - AluY SINE Alu -17 294 1 227 331 107 57 chr1 181582430 181582467 -61081886 + L3 LINE CR1 1374 1408 -169 489 274 6 24 chr1 181583777 181583945 -61080408 - MER117 DNA MER1_type -24 173 9 273 269 77 10 chr1 181584356 181584460 -61079893 - L2 LINE L2 -78 3235 3125 541 288 47 18 chr1 181585132 181585302 -61079051 + MER58A DNA MER1_type 1 175 -49 827 244 49 10 chr1 181585390 181585595 -61078758 + MER58A DNA MER1_type 1 213 -11 1460 135 31 5 chr1 181585899 181586168 -61078185 - L1MA7 LINE L1 -34 6272 5988 213 240 151 56 chr1 181586578 181586757 -61077596 - L2 LINE L2 0 3313 3118 21 0 0 0 chr1 181586999 181587020 -61077333 + AT_rich Low_complexity Low_complexity 1 21 0 1251 366 99 35 chr1 181587085 181588013 -61076340 - L2 LINE L2 -10 3303 2242 1568 235 25 3 chr1 181588013 181588370 -61075983 - MLT1A1 LTR MaLR 0 365 1 1251 366 99 35 chr1 181588370 181588871 -61075482 - L2 LINE L2 -1071 2242 1774 252 191 0 0 chr1 181590191 181590233 -61074120 - LTR40b LTR ERVL 0 462 421 293 205 12 72 chr1 181590426 181590509 -61073844 + LTR68 LTR ERV1 218 295 -445 686 222 14 7 chr1 181590683 181590827 -61073526 + LTR68 LTR ERV1 596 740 0 27 29 0 0 chr1 181590909 181590943 -61073410 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr1 181591051 181591086 -61073267 + AT_rich Low_complexity Low_complexity 1 35 0 213 197 40 0 chr1 181591213 181591289 -61073064 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 0 0 0 chr1 181591423 181591445 -61072908 + AT_rich Low_complexity Low_complexity 1 22 0 249 176 120 56 chr1 181592446 181592588 -61071765 + MER69 DNA AcHobo 2298 2448 -78 337 337 88 36 chr1 181592684 181592933 -61071420 - L1ME LINE L1 -382 5739 5478 3166 21 5 0 chr1 181593647 181594022 -61070331 + L1PA4 LINE L1 5777 6153 -2 414 0 0 0 chr1 181594663 181594709 -61069644 + (CA)n Simple_repeat Simple_repeat 1 46 0 729 96 0 0 chr1 181595284 181595409 -61068944 + (TA)n Simple_repeat Simple_repeat 2 126 0 273 264 14 14 chr1 181595450 181595522 -61068831 + L2 LINE L2 3242 3313 0 1974 240 29 56 chr1 181595712 181595796 -61068557 - L1MCb LINE L1 -2906 3658 3573 4134 155 15 7 chr1 181595796 181596527 -61067826 - L1PA13 LINE L1 -8 6155 5419 1974 240 29 56 chr1 181596527 181597453 -61066900 - L1MCb LINE L1 -2991 3573 2676 3049 225 127 43 chr1 181597472 181599239 -61065114 - L1MCb LINE L1 -3818 2746 813 267 320 16 16 chr1 181599478 181599600 -61064753 - L1MCb LINE L1 -6281 283 162 21 71 0 0 chr1 181600129 181600171 -61064182 + AT_rich Low_complexity Low_complexity 1 42 0 43812 41 1 0 chr1 181600856 181607005 -61057348 + L1PA3 LINE L1 1 6155 0 3444 129 67 63 chr1 181608255 181608970 -61055383 - LTR1 LTR ERV1 -67 718 1 305 328 48 0 chr1 181609242 181609367 -61054986 - MIR SINE MIR -14 248 118 1769 185 73 10 chr1 181609400 181610020 -61054333 + MER67C LTR ERV1 1 709 -1 409 141 0 0 chr1 181610192 181610256 -61054097 + MER92C LTR ERV1 489 552 -2 1578 175 46 88 chr1 181610522 181610998 -61053355 - MER89 LTR ERV1 0 559 1 2004 104 45 3 chr1 181611581 181611870 -61052483 - AluSc SINE Alu -8 301 1 190 370 59 25 chr1 181612515 181612634 -61051719 + L2 LINE L2 3145 3267 -5 30 27 0 0 chr1 181614014 181614051 -61050302 + AT_rich Low_complexity Low_complexity 1 37 0 3367 222 28 33 chr1 181614605 181616132 -61048221 + L1MC2 LINE L1 4265 5783 -561 881 171 95 14 chr1 181616236 181616446 -61047907 + L1MC2 LINE L1 6109 6335 -9 22 0 0 0 chr1 181617197 181617219 -61047134 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr1 181617632 181617674 -61046679 + AT_rich Low_complexity Low_complexity 1 42 0 714 197 0 0 chr1 181617777 181617899 -61046454 + MSTB LTR MaLR 305 426 0 2907 240 82 46 chr1 181618050 181619829 -61044524 + L1MDb LINE L1 771 2634 -3772 958 240 123 27 chr1 181620328 181620661 -61043692 - MLT1A1 LTR MaLR 0 365 1 226 308 58 8 chr1 181620806 181620926 -61043427 + MIR SINE MIR 132 257 -5 22 80 0 0 chr1 181621335 181621385 -61042968 + AT_rich Low_complexity Low_complexity 1 50 0 301 338 53 53 chr1 181621575 181621803 -61042550 - L1M4c LINE L1 -4891 2068 1841 1398 236 83 80 chr1 181621824 181622435 -61041918 + MLT1E2 LTR MaLR 14 626 0 1736 259 46 59 chr1 181622435 181623111 -61041242 + MLT1E2-int LTR MaLR 1 667 -704 1065 190 0 19 chr1 181623391 181623607 -61040746 - L1PA16 LINE L1 -9 6157 5946 3454 258 55 30 chr1 181623620 181625029 -61039324 - L1 LINE L1 -791 5355 3912 241 294 87 0 chr1 181625061 181625153 -61039200 - L1M4c LINE L1 -3361 3596 3497 346 292 28 49 chr1 181625222 181625366 -61038987 - L1M4c LINE L1 -5507 1352 1212 230 308 62 112 chr1 181625437 181625811 -61038542 - L1M4c LINE L1 -5671 1184 830 414 321 27 11 chr1 181625951 181626138 -61038215 - L1M4c LINE L1 -6559 300 111 2133 116 3 3 chr1 181626142 181626453 -61037900 - AluSq SINE Alu -2 311 1 2049 100 31 0 chr1 181627008 181627299 -61037054 + AluSc SINE Alu 6 305 -4 233 315 23 39 chr1 181627452 181627582 -61036771 - Charlie8 DNA MER1_type -2190 227 100 271 333 0 0 chr1 181627993 181628068 -61036285 - L2 LINE L2 -12 3260 3186 268 281 132 16 chr1 181629650 181629771 -61034582 - MIR SINE MIR -2 260 126 266 200 0 0 chr1 181629776 181629821 -61034532 - 5S rRNA rRNA -76 45 1 4238 103 21 0 chr1 181629822 181630432 -61033921 + L1PA11 LINE L1 5544 6166 -8 1222 296 118 25 chr1 181630730 181631170 -61033183 + ERVL LTR ERVL 3129 3609 -2155 1534 281 59 36 chr1 181631739 181632301 -61032052 + ERVL LTR ERVL 4356 4930 -834 236 130 22 0 chr1 181632421 181632467 -61031886 + GA-rich Low_complexity Low_complexity 4 50 0 22 35 0 0 chr1 181632876 181632905 -61031448 + AT_rich Low_complexity Low_complexity 1 29 0 269 336 61 61 chr1 181632945 181633084 -61031269 - L2 LINE L2 -1343 1971 1830 2045 85 92 0 chr1 181633084 181633367 -61030986 + AluY SINE Alu 1 309 -2 269 336 61 61 chr1 181633367 181633441 -61030912 - L2 LINE L2 -1483 1831 1758 1437 224 73 28 chr1 181633441 181633865 -61030488 - MSTB2 LTR MaLR 0 457 15 214 261 0 58 chr1 181633868 181633937 -61030416 - L2 LINE L2 -1552 1762 1698 760 251 22 22 chr1 181635347 181635530 -61028823 - MER5A DNA MER1_type -6 183 1 309 350 117 14 chr1 181635978 181636192 -61028161 + L1ME LINE L1 5313 5548 -614 269 160 11 64 chr1 181636433 181636527 -61027826 - L1MC/D LINE L1 -762 5480 5392 193 318 57 0 chr1 181636850 181636938 -61027415 - MIR SINE MIR -9 253 161 538 286 65 20 chr1 181636950 181637195 -61027158 - MIR SINE MIR -3 259 4 444 273 41 67 chr1 181637339 181637533 -61026820 - MIR SINE MIR 0 262 74 449 326 116 49 chr1 181637805 181638149 -61026204 - L2 LINE L2 0 3313 2947 300 27 0 0 chr1 181639000 181639037 -61025316 + (CA)n Simple_repeat Simple_repeat 2 38 0 2241 119 0 0 chr1 181639701 181640011 -61024342 - AluSg SINE Alu 0 310 1 355 300 19 110 chr1 181640073 181640169 -61024184 - L2 LINE L2 -11 3302 3199 1850 191 11 19 chr1 181640169 181640547 -61023806 + THE1C LTR MaLR 1 375 0 355 300 19 110 chr1 181640547 181640642 -61023711 - L2 LINE L2 -114 3199 3147 401 298 48 18 chr1 181640642 181640810 -61023543 - MER69A DNA AcHobo 0 177 5 355 300 19 110 chr1 181640810 181640927 -61023426 - L2 LINE L2 -166 3147 3021 1271 306 38 113 chr1 181640951 181641883 -61022470 - L2 LINE L2 -2375 939 78 1577 176 49 9 chr1 181643658 181643982 -61020371 + MER44D DNA MER2_type 1 607 -2 304 237 10 52 chr1 181644215 181644312 -61020041 - LTR65 LTR ERV1 -109 560 468 444 319 21 0 chr1 181644831 181644975 -61019378 - MIR SINE MIR -37 225 79 5054 175 25 31 chr1 181645537 181646658 -61017695 - L1PA15 LINE L1 0 6816 5689 2115 114 10 10 chr1 181646658 181646966 -61017387 - AluSp SINE Alu -3 310 3 5054 175 25 31 chr1 181646966 181647213 -61017140 - L1PA15 LINE L1 -1127 5689 5442 198 0 0 0 chr1 181647213 181647235 -61017118 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 5054 175 25 31 chr1 181647235 181647568 -61016785 - L1PA15 LINE L1 -1374 5442 5131 3538 259 20 4 chr1 181647568 181648584 -61015769 - L1PA15 LINE L1 -2260 4537 3506 290 258 11 34 chr1 181648604 181648693 -61015660 - L1PA15 LINE L1 -6700 87 1 456 239 0 9 chr1 181648753 181648862 -61015491 + L1 LINE L1 2946 3053 -3093 333 68 0 0 chr1 181648998 181649042 -61015311 + (TA)n Simple_repeat Simple_repeat 1 44 0 29 47 0 0 chr1 181649166 181649209 -61015144 + AT_rich Low_complexity Low_complexity 1 43 0 25 83 0 0 chr1 181649556 181649616 -61014737 + AT_rich Low_complexity Low_complexity 1 60 0 266 283 0 116 chr1 181649619 181649757 -61014596 - L2 LINE L2 -8 3305 3184 255 277 12 0 chr1 181649759 181649842 -61014511 + (TATG)n Simple_repeat Simple_repeat 4 87 0 240 315 0 0 chr1 181649958 181650047 -61014306 + L1ME LINE L1 5688 5776 -345 276 196 0 0 chr1 181650401 181650447 -61013906 - MSTA LTR MaLR 0 428 383 2069 109 37 3 chr1 181650449 181650743 -61013610 + AluSp SINE Alu 4 307 -6 638 84 0 11 chr1 181650743 181650838 -61013515 + (GGAA)n Simple_repeat Simple_repeat 1 94 0 1911 159 81 16 chr1 181650838 181651210 -61013143 - MSTA LTR MaLR -27 401 6 326 287 0 103 chr1 181651304 181651371 -61012982 - L2 LINE L2 -733 2581 2509 704 314 5 9 chr1 181651371 181651594 -61012759 + MER58A DNA MER1_type 2 223 -1 326 287 0 103 chr1 181651594 181651721 -61012632 - L2 LINE L2 -805 2509 2407 6625 98 1 1 chr1 181652928 181653884 -61010469 - L1P LINE L1 -789 5357 4402 1534 98 0 18 chr1 181653884 181654108 -61010245 + L1PA8 LINE L1 5935 6155 -17 195 100 0 0 chr1 181656913 181656943 -61007410 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr1 181657008 181657040 -61007313 + AT_rich Low_complexity Low_complexity 1 32 0 26 64 0 0 chr1 181657248 181657295 -61007058 + AT_rich Low_complexity Low_complexity 1 47 0 411 73 0 0 chr1 181657855 181657910 -61006443 + (TG)n Simple_repeat Simple_repeat 2 56 0 315 147 0 27 chr1 181657910 181657979 -61006374 + (TA)n Simple_repeat Simple_repeat 2 68 0 332 236 22 22 chr1 181657982 181658071 -61006282 - L1MC4 LINE L1 -1340 6702 6614 * 336 253 11 11 chr1 181658005 181658092 -61006261 + L1MC4 LINE L1 6614 6700 -1342 431 147 0 49 chr1 181658095 181658238 -61006115 + (TA)n Simple_repeat Simple_repeat 1 136 0 23 33 0 0 chr1 181658276 181658306 -61006047 + AT_rich Low_complexity Low_complexity 1 30 0 477 323 57 39 chr1 181658310 181658644 -61005709 - L1ME1 LINE L1 -27 6139 5800 354 264 39 0 chr1 181658648 181658777 -61005576 - L1MCa LINE L1 -5047 1379 1246 1126 327 60 49 chr1 181658804 181659805 -61004548 - HERV16 LTR ERVL -2285 2711 1674 338 181 0 69 chr1 181660215 181660287 -61004066 + MLT1C LTR MaLR 317 460 -7 1239 217 13 23 chr1 181663162 181663461 -61000892 - AluJo SINE Alu -16 296 1 511 278 84 26 chr1 181663733 181663924 -61000429 + MIR SINE MIR 3 204 -58 236 200 17 0 chr1 181663925 181663985 -61000368 + (TA)n Simple_repeat Simple_repeat 2 62 0 1984 142 0 7 chr1 181664068 181664364 -60999989 - AluSx SINE Alu -18 294 1 901 307 41 43 chr1 181664422 181664885 -60999468 + L1M4 LINE L1 16 477 -6065 2272 289 29 30 chr1 181664922 181666311 -60998042 + L1PA12 LINE L1 2 1927 -4860 * 9648 235 29 27 chr1 181666310 181667004 -60997349 + L1PA12 LINE L1 3174 3866 -2950 1987 133 0 3 chr1 181667004 181667305 -60997048 + AluSg SINE Alu 1 300 -10 2303 66 21 0 chr1 181667307 181667593 -60996760 + AluY SINE Alu 12 303 -8 9648 235 29 27 chr1 181667593 181669810 -60994543 + L1PA12 LINE L1 3866 6082 -734 1445 122 4 0 chr1 181669804 181670034 -60994319 + L1P LINE L1 2753 2983 -3163 * 2388 62 0 13 chr1 181670074 181670379 -60993974 - AluY SINE Alu -10 301 1 252 0 0 0 chr1 181670391 181670419 -60993934 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2156 80 14 0 chr1 181670434 181670710 -60993643 - AluSp SINE Alu -33 280 1 550 42 14 0 chr1 181670710 181670781 -60993572 - L1PA12 LINE L1 -567 6258 6187 1938 148 9 3 chr1 181670784 181671102 -60993251 + L1PA12 LINE L1 6258 6577 -242 24 67 0 0 chr1 181671142 181671187 -60993166 + AT_rich Low_complexity Low_complexity 1 45 0 31 44 0 0 chr1 181671276 181671321 -60993032 + AT_rich Low_complexity Low_complexity 1 45 0 1291 250 103 24 chr1 181671373 181671841 -60992512 - MLT1D LTR MaLR 0 505 1 24 85 0 0 chr1 181671929 181671988 -60992365 + AT_rich Low_complexity Low_complexity 1 59 0 2736 192 75 2 chr1 181672078 181672468 -60991885 - MER6A DNA MER2_type -261 604 159 189 0 0 0 chr1 181672468 181672489 -60991864 + (CTCA)n Simple_repeat Simple_repeat 1 21 0 2736 192 75 2 chr1 181672489 181672660 -60991693 - MER6A DNA MER2_type -706 159 2 185 396 43 24 chr1 181672783 181672947 -60991406 + L2 LINE L2 2869 3035 -237 578 322 5 23 chr1 181673065 181673279 -60991074 + MIR SINE MIR 53 262 0 1089 81 46 23 chr1 181673391 181673565 -60990788 - MER75B DNA T2_type 0 243 66 324 68 0 0 chr1 181673541 181673585 -60990768 + MER75B DNA T2_type 29 72 -171 * 351 96 0 0 chr1 181673584 181673636 -60990717 + MER75B DNA T2_type 21 72 -171 305 167 0 0 chr1 181673691 181673745 -60990608 - MER75B DNA T2_type -189 54 1 180 143 0 0 chr1 181674952 181674980 -60989373 - L2 LINE L2 -15 3298 3271 2210 275 16 12 chr1 181675343 181676138 -60988215 - L1PA15-16 LINE L1 -3702 3147 2342 2308 206 7 7 chr1 181676149 181676561 -60987792 - MSTB LTR MaLR -14 412 1 1109 232 59 29 chr1 181676562 181676937 -60987416 - L1PA15-16 LINE L1 -4506 2343 1958 22 0 0 0 chr1 181677646 181677668 -60986685 + AT_rich Low_complexity Low_complexity 1 22 0 326 273 23 11 chr1 181677889 181677977 -60986376 - L2 LINE L2 0 3272 3184 503 261 29 14 chr1 181678376 181678514 -60985839 - L2 LINE L2 0 3313 3174 22 70 0 0 chr1 181679317 181679360 -60984993 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr1 181681517 181681546 -60982807 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr1 181682088 181682113 -60982240 + (T)n Simple_repeat Simple_repeat 1 25 0 378 0 0 0 chr1 181682987 181683029 -60981324 + (TA)n Simple_repeat Simple_repeat 1 42 0 4787 166 36 25 chr1 181683029 181684551 -60979802 - L1MA8 LINE L1 -76 7634 6093 1178 212 31 3 chr1 181684558 181684846 -60979507 - L1MA8 LINE L1 -1771 5794 5499 1388 227 14 6 chr1 181684971 181685337 -60979016 - L1MA8 LINE L1 -2451 5114 4746 740 220 67 118 chr1 181685331 181685418 -60978935 - L1MA8 LINE L1 -3942 3623 3533 * 1559 205 3 24 chr1 181685418 181685706 -60978647 - AluJo SINE Alu -30 282 1 740 220 67 118 chr1 181685706 181686068 -60978285 - L1MA8 LINE L1 -4032 3533 3197 361 279 143 7 chr1 181686089 181686236 -60978117 + MIR SINE MIR 47 213 -49 373 297 73 46 chr1 181686305 181686524 -60977829 + L2 LINE L2 3088 3312 -1 36 62 0 0 chr1 181686970 181687034 -60977319 + AT_rich Low_complexity Low_complexity 1 64 0 38 61 0 0 chr1 181687927 181687993 -60976360 + AT_rich Low_complexity Low_complexity 1 66 0 2053 116 3 10 chr1 181688001 181688337 -60976016 + AluSq SINE Alu 1 313 0 254 250 13 13 chr1 181689490 181689566 -60974787 + MIR SINE MIR 185 260 -2 315 239 94 14 chr1 181690141 181690279 -60974074 + L1M4 LINE L1 4617 4765 -1381 1804 268 59 26 chr1 181690281 181690825 -60973528 + MER77 LTR ERV1 41 602 -3 630 230 21 31 chr1 181690920 181691111 -60973242 - MER3 DNA MER1_type -19 190 2 1415 281 52 35 chr1 181691389 181692050 -60972303 - LTR68 LTR ERV1 -11 729 1 444 311 14 34 chr1 181692113 181692261 -60972092 - MIR SINE MIR -113 149 5 2180 203 34 11 chr1 181693071 181693548 -60970805 - LTR45B LTR ERV1 0 489 2 375 296 6 6 chr1 181694106 181694346 -60970007 + (TA)n Simple_repeat Simple_repeat 1 240 0 21 0 0 0 chr1 181694552 181694573 -60969780 + AT_rich Low_complexity Low_complexity 1 21 0 4207 193 17 11 chr1 181694573 181695539 -60968814 - L1PB4 LINE L1 -9 6849 5878 1051 81 5 38 chr1 181695542 181695728 -60968625 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2630 84 14 3 chr1 181695733 181696088 -60968265 - L1PA10 LINE L1 -22 6146 5788 307 50 0 0 chr1 181696083 181696123 -60968230 + L1PA10 LINE L1 5730 5769 -399 * 7939 233 44 20 chr1 181696121 181698399 -60965954 - L1PB4 LINE L1 -1130 5718 3386 1006 154 0 34 chr1 181698425 181698600 -60965753 - AluSg/x SINE Alu -9 301 133 274 238 0 0 chr1 181698621 181698684 -60965669 - L1PB4 LINE L1 -3544 3304 3242 603 333 77 21 chr1 181698786 181699254 -60965099 - L1PB4 LINE L1 -5269 1579 994 628 259 113 79 chr1 181699451 181699624 -60964729 - L1PB4 LINE L1 -5780 1069 882 180 0 0 0 chr1 181699624 181699644 -60964709 + (GACTG)n Simple_repeat Simple_repeat 4 23 0 628 259 113 79 chr1 181699644 181699736 -60964617 - L1PB4 LINE L1 -5967 882 795 23 54 0 0 chr1 181700569 181700606 -60963747 + AT_rich Low_complexity Low_complexity 1 37 0 202 273 0 0 chr1 181701402 181701457 -60962896 + CT-rich Low_complexity Low_complexity 1 55 0 491 310 35 20 chr1 181701539 181701736 -60962617 + MIR SINE MIR 53 252 -10 238 327 214 33 chr1 181701839 181702484 -60961869 + L2 LINE L2 2215 2982 -290 3748 9 0 0 chr1 181702793 181703219 -60961134 + L1PA2 LINE L1 5730 6155 0 23 0 0 0 chr1 181703337 181703360 -60960993 + AT_rich Low_complexity Low_complexity 1 23 0 1863 134 0 55 chr1 181703610 181703917 -60960436 + AluSx SINE Alu 5 294 -18 397 313 42 14 chr1 181707226 181707370 -60956983 + MLT2E LTR ERVL 45 192 -436 962 299 46 46 chr1 181707806 181708285 -60956068 - ERVL LTR ERVL -3195 2569 2091 2270 84 0 0 chr1 181708524 181708821 -60955532 + AluY SINE Alu 1 297 -14 198 143 0 0 chr1 181708929 181708964 -60955389 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr1 181709028 181709065 -60955288 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr1 181709562 181709592 -60954761 + AT_rich Low_complexity Low_complexity 1 30 0 30 59 0 0 chr1 181709609 181709660 -60954693 + AT_rich Low_complexity Low_complexity 1 51 0 2025 253 60 30 chr1 181709785 181710453 -60953900 - MER76 LTR ERV 0 688 1 388 212 0 0 chr1 181710474 181710559 -60953794 + L1M4 LINE L1 3894 3978 -2168 405 351 47 77 chr1 181710570 181711105 -60953248 + L1ME LINE L1 182 700 -5696 866 266 128 29 chr1 181711125 181711896 -60952457 + L1ME LINE L1 4731 5588 -647 759 314 84 41 chr1 181711910 181712397 -60951956 + ERVL LTR ERVL 1432 1939 -3825 348 155 0 0 chr1 181712429 181712500 -60951853 + (CA)n Simple_repeat Simple_repeat 1 71 0 204 279 32 19 chr1 181712500 181712658 -60951695 + (TA)n Simple_repeat Simple_repeat 1 160 0 844 299 46 24 chr1 181712694 181713227 -60951126 + ERVL LTR ERVL 3116 3653 -2001 1253 265 49 14 chr1 181713260 181713626 -60950727 - MER74A LTR ERVL -31 527 149 338 311 66 18 chr1 181713863 181714030 -60950323 + ERVL LTR ERVL 3709 3883 -1771 496 300 45 25 chr1 181714048 181714375 -60949978 + ERVL LTR ERVL 3862 4218 -1436 504 258 163 82 chr1 181714377 181714843 -60949510 - MLT1H LTR MaLR -2 547 44 620 301 94 11 chr1 181714904 181715226 -60949127 + ERVL LTR ERVL 4236 4576 -909 207 286 18 0 chr1 181715702 181715758 -60948595 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1119 348 39 41 chr1 181715759 181715855 -60948498 + ERVL LTR ERVL 4234 4329 -1435 308 83 21 0 chr1 181715855 181715903 -60948450 + (TG)n Simple_repeat Simple_repeat 2 50 0 1119 348 39 41 chr1 181715903 181716627 -60947726 + ERVL LTR ERVL 4329 5052 -712 374 246 91 91 chr1 181717005 181717192 -60947161 - L2 LINE L2 -9 3304 3118 333 355 103 6 chr1 181718159 181718240 -60946113 + L1 LINE L1 2521 2593 -3553 3528 70 0 4 chr1 181718240 181718699 -60945654 + L1PA7 LINE L1 5695 6151 -3 333 355 103 6 chr1 181718699 181718938 -60945415 + L1 LINE L1 2593 2872 -3274 247 333 22 0 chr1 181718959 181719094 -60945259 + L1 LINE L1 2892 3029 -3117 2547 207 73 2 chr1 181719198 181719720 -60944633 + Tigger7 DNA MER2_type 8 566 -1921 1533 74 13 17 chr1 181719721 181719951 -60944402 + Tigger7 DNA MER2_type 2262 2490 -97 643 167 22 43 chr1 181719967 181720105 -60944248 + Tigger7 DNA MER2_type 2353 2487 0 2355 61 0 35 chr1 181720240 181720551 -60943802 + AluY SINE Alu 1 300 -11 30 0 0 0 chr1 181720742 181720772 -60943581 + AT_rich Low_complexity Low_complexity 1 30 0 870 357 24 13 chr1 181720798 181721095 -60943258 - L2 LINE L2 -352 2962 2659 2197 119 87 0 chr1 181721095 181721430 -60942923 + THE1B LTR MaLR 1 364 0 870 357 24 13 chr1 181721430 181721510 -60942843 - L2 LINE L2 -655 2659 2581 375 246 32 0 chr1 181721539 181721643 -60942710 - MER5A DNA MER1_type -80 109 4 317 311 20 53 chr1 181721741 181721892 -60942461 - L1M4 LINE L1 -3339 2807 2662 1496 180 60 14 chr1 181722107 181722390 -60941963 - AluJb SINE Alu -11 301 6 34 42 0 0 chr1 181723166 181723214 -60941139 + AT_rich Low_complexity Low_complexity 1 48 0 284 261 14 58 chr1 181723413 181723551 -60940802 + L1ME2 LINE L1 5930 6061 -103 3650 168 37 5 chr1 181723833 181724776 -60939577 + L1PA16 LINE L1 4929 5897 -269 229 111 22 0 chr1 181724977 181725022 -60939331 + L1ME3 LINE L1 6115 6160 -2 3906 215 45 4 chr1 181725312 181726247 -60938106 + L1 LINE L1 3545 4517 -1629 586 246 55 82 chr1 181726278 181726718 -60937635 - L1MEc LINE L1 -2436 3779 3352 325 211 33 0 chr1 181726823 181726913 -60937440 - L1MEc LINE L1 -2869 3346 3254 247 293 89 0 chr1 181727008 181727131 -60937222 - L1MEc LINE L1 -5215 1181 1048 382 295 84 20 chr1 181727166 181727417 -60936936 - L1M4 LINE L1 -1397 4749 4483 282 143 0 0 chr1 181727689 181727738 -60936615 + (CA)n Simple_repeat Simple_repeat 2 50 0 316 263 127 82 chr1 181727754 181728203 -60936150 - L1MEc LINE L1 -4656 1740 1272 31 44 0 0 chr1 181728909 181728954 -60935399 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr1 181729735 181729756 -60934597 + AT_rich Low_complexity Low_complexity 1 21 0 532 77 26 0 chr1 181731300 181731378 -60932975 + MADE1 DNA Mariner 1 80 0 1606 176 11 0 chr1 181731504 181731788 -60932565 - AluSx SINE Alu -15 297 11 22 0 0 0 chr1 181731907 181731929 -60932424 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr1 181732479 181732504 -60931849 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 181732518 181732539 -60931814 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 181732947 181732969 -60931384 + AT_rich Low_complexity Low_complexity 1 22 0 216 309 88 0 chr1 181733356 181733424 -60930929 + MER91 DNA MER1_type 42 115 -81 25 0 0 0 chr1 181733902 181733927 -60930426 + AT_rich Low_complexity Low_complexity 1 25 0 1811 155 3 0 chr1 181734258 181734568 -60929785 - AluSq SINE Alu 0 311 1 23 0 0 0 chr1 181734988 181735011 -60929342 + AT_rich Low_complexity Low_complexity 1 23 0 3715 120 27 16 chr1 181735396 181736021 -60928332 + L1MA3 LINE L1 5672 6303 -2 277 336 53 0 chr1 181736117 181736248 -60928105 + L1ME LINE L1 5529 5666 -498 994 243 49 4 chr1 181736264 181736490 -60927863 + MLT1G LTR MaLR 330 565 -25 2054 130 0 0 chr1 181737025 181737318 -60927035 - AluSg SINE Alu -17 293 1 906 219 0 16 chr1 181738997 181739189 -60925164 - MER5A DNA MER1_type 0 189 1 666 258 50 0 chr1 181740008 181740167 -60924186 - MER5A DNA MER1_type -22 167 1 474 343 0 0 chr1 181740168 181740308 -60924045 + MLT1J LTR MaLR 207 346 -165 254 133 59 0 chr1 181740504 181740572 -60923781 - L1MA5A LINE L1 0 6297 6221 1139 205 15 105 chr1 181740711 181741043 -60923310 - AluJb SINE Alu 0 302 1 250 278 46 120 chr1 181741205 181741313 -60923040 + MIR SINE MIR 36 135 -73 211 333 11 0 chr1 181741420 181741507 -60922846 + MIR SINE MIR 175 262 0 23 33 0 0 chr1 181741535 181741565 -60922788 + AT_rich Low_complexity Low_complexity 1 30 0 1511 135 31 0 chr1 181741582 181741841 -60922512 - L1PA13 LINE L1 -3 6160 5894 6603 213 19 26 chr1 181741842 181742373 -60921980 - L1PA12 LINE L1 -2683 4901 4368 2155 123 0 0 chr1 181742373 181742675 -60921678 - AluSg SINE Alu -8 302 1 6603 213 19 26 chr1 181742675 181743797 -60920556 - L1PA12 LINE L1 -3216 4368 3260 1542 156 63 42 chr1 181743797 181744130 -60920223 - THE1C LTR MaLR 0 375 36 1287 119 10 5 chr1 181744143 181744344 -60920009 - THE1C-int LTR MaLR -4 1576 1375 2403 84 23 124 chr1 181744356 181744798 -60919555 - THE1C-int LTR MaLR -1183 397 1 1890 142 44 25 chr1 181744800 181745166 -60919187 - THE1C LTR MaLR -2 373 1 3050 192 68 2 chr1 181745168 181745950 -60918403 - L1PA12 LINE L1 -4322 3262 2435 1213 277 46 50 chr1 181745973 181746475 -60917878 - L1PA12 LINE L1 -5641 1940 1441 836 154 93 60 chr1 181747595 181747777 -60916576 - Tigger4(Zombi) DNA MER2_type -5 2726 2539 329 290 69 27 chr1 181747953 181748220 -60916133 - L1ME LINE L1 -336 5785 5511 1031 193 80 0 chr1 181748230 181748443 -60915910 + LTR32 LTR ERVL 15 244 -227 1525 197 102 14 chr1 181748483 181748844 -60915509 + MSTA LTR MaLR 36 428 0 545 215 19 0 chr1 181748845 181748952 -60915401 + LTR32 LTR ERVL 241 349 -122 618 232 0 58 chr1 181748964 181749119 -60915234 + LTR32 LTR ERVL 326 471 0 316 286 29 7 chr1 181749148 181749288 -60915065 - L1ME LINE L1 -2336 5472 5330 420 293 115 48 chr1 181749357 181749688 -60914665 - L1ME LINE L1 -917 5229 4877 221 244 0 0 chr1 181749878 181749923 -60914430 + (CA)n Simple_repeat Simple_repeat 2 46 0 2507 261 55 7 chr1 181750829 181751666 -60912687 - L1ME LINE L1 -2486 3660 2784 420 253 12 6 chr1 181752268 181752430 -60911923 + CT-rich Low_complexity Low_complexity 3 165 0 693 391 23 0 chr1 181754703 181754964 -60909389 + L2 LINE L2 1110 1376 -1938 258 188 0 47 chr1 181755042 181755127 -60909226 - L1PA16 LINE L1 -6 6160 6080 6821 216 20 13 chr1 181755205 181757683 -60906670 - L1PB4 LINE L1 -91 6122 3632 4665 246 24 15 chr1 181757703 181759244 -60905109 - L1PB4 LINE L1 -3850 2353 713 696 313 69 21 chr1 181760557 181760848 -60903505 + L2 LINE L2 1903 2207 -1107 1015 263 115 13 chr1 181760864 181761176 -60903177 + MLT1A2 LTR MaLR 29 372 -2 393 324 48 65 chr1 181761179 181761515 -60902838 + L2 LINE L2 2982 3311 -2 4325 195 2 9 chr1 181762134 181763004 -60901349 - L1PA15 LINE L1 -1657 4489 3626 3982 159 26 44 chr1 181763013 181764037 -60900316 + L1PA15 LINE L1 4497 5498 -676 2693 155 31 43 chr1 181764038 181764120 -60900233 + L1PA15 LINE L1 5585 5666 -499 1791 164 0 17 chr1 181764120 181764413 -60899940 + AluJb SINE Alu 1 288 -24 375 78 0 0 chr1 181764413 181764464 -60899889 + (TA)n Simple_repeat Simple_repeat 2 52 0 2693 155 31 43 chr1 181764464 181764873 -60899480 + L1PA15 LINE L1 5665 6072 -93 1941 77 4 0 chr1 181764873 181765166 -60899187 + AluY SINE Alu 21 314 0 2693 155 31 43 chr1 181765166 181765257 -60899096 + L1PA15 LINE L1 6072 6163 -2 1000 208 27 18 chr1 181765616 181765837 -60898516 - L1MC1 LINE L1 -6 6607 6385 345 309 7 15 chr1 181765840 181765976 -60898377 - L1M4 LINE L1 -1690 4456 4322 4110 237 38 11 chr1 181765979 181766690 -60897663 - L1MC1 LINE L1 -238 6375 5685 773 172 22 0 chr1 181766690 181766824 -60897529 - L1PA15 LINE L1 -18 6147 6011 4110 237 38 11 chr1 181766824 181768012 -60896341 - L1MC1 LINE L1 -928 5685 4424 1066 235 50 63 chr1 181768012 181768664 -60895689 - LTR19C LTR ERV1 0 779 1 2767 263 25 7 chr1 181768664 181769528 -60894825 - L1MC1 LINE L1 -1999 4427 3548 2756 262 22 17 chr1 181769543 181769789 -60894564 - L1MC1 LINE L1 -2994 3432 3189 2145 113 0 10 chr1 181769789 181770089 -60894264 + AluSg SINE Alu 1 297 -13 2756 262 22 17 chr1 181770089 181771008 -60893345 - L1MC1 LINE L1 -3237 3189 2257 272 310 49 72 chr1 181771110 181771458 -60892895 + MLT1I LTR MaLR 49 388 -21 914 251 0 0 chr1 181771673 181771856 -60892497 - MER58A DNA MER1_type 0 224 42 1348 228 28 16 chr1 181772080 181772431 -60891922 - MLT1A1 LTR MaLR -4 463 5 335 314 19 0 chr1 181773172 181773277 -60891076 + MLT1I LTR MaLR 101 207 -202 2228 61 0 76 chr1 181773860 181774190 -60890163 + AluYb8 SINE Alu 1 305 -13 230 276 134 8 chr1 181774774 181774901 -60889452 + L1ME3A LINE L1 4087 4229 -1917 1246 118 0 0 chr1 181775083 181775253 -60889100 + AluSp SINE Alu 141 310 -3 484 302 92 30 chr1 181775257 181776018 -60888335 + L1ME3A LINE L1 4426 5283 -863 538 297 143 70 chr1 181776030 181776094 -60888259 - MLT1H LTR MaLR 0 595 537 2529 53 0 0 chr1 181776094 181776396 -60887957 - AluY SINE Alu -9 302 1 538 297 143 70 chr1 181776396 181776589 -60887764 - MLT1H LTR MaLR -58 537 359 1702 92 24 0 chr1 181776589 181776839 -60887514 - L1PA14 LINE L1 0 6161 5906 538 297 143 70 chr1 181776839 181777133 -60887220 - MLT1H LTR MaLR -236 359 3 990 280 40 53 chr1 181777135 181777619 -60886734 + L1ME3A LINE L1 5305 5794 -376 1054 231 81 75 chr1 181777619 181777991 -60886362 - MLT1A2 LTR MaLR 0 374 1 990 280 40 53 chr1 181777991 181778152 -60886201 + L1ME3A LINE L1 5794 5956 -214 1417 244 104 46 chr1 181778507 181779007 -60885346 - MLT1F LTR MaLR -8 534 6 195 282 70 14 chr1 181780663 181780734 -60883619 - L2 LINE L2 -1 3312 3238 619 289 16 16 chr1 181783940 181784134 -60880219 + MIR SINE MIR 67 260 -2 636 264 82 11 chr1 181784564 181784746 -60879607 + MIR SINE MIR 3 197 -65 240 163 0 0 chr1 181784931 181784974 -60879379 + (TA)n Simple_repeat Simple_repeat 2 44 0 51 0 0 0 chr1 181785191 181785242 -60879111 + AT_rich Low_complexity Low_complexity 1 51 0 616 328 51 0 chr1 181785386 181785581 -60878772 + L2 LINE L2 1362 1566 -1748 1253 345 78 8 chr1 181785591 181786254 -60878099 + L2 LINE L2 1862 2571 -743 431 344 62 18 chr1 181786371 181786644 -60877709 + L2 LINE L2 3015 3299 -14 21 36 0 0 chr1 181786753 181786781 -60877572 + AT_rich Low_complexity Low_complexity 1 28 0 1791 198 50 40 chr1 181787031 181787455 -60876898 - MSTC LTR MaLR 0 428 1 23 54 0 0 chr1 181787707 181787744 -60876609 + AT_rich Low_complexity Low_complexity 1 37 0 1281 216 102 9 chr1 181788164 181788498 -60875855 - MLT1A1 LTR MaLR 0 365 1 416 316 73 27 chr1 181788533 181788898 -60875455 - L2 LINE L2 -4 3309 2858 391 286 73 46 chr1 181788914 181789173 -60875180 - L1MEc LINE L1 -4256 2465 2200 1793 172 25 11 chr1 181790374 181790729 -60873624 + L1PB4 LINE L1 5792 6151 -5 2352 53 0 3 chr1 181790843 181791168 -60873185 + AluY SINE Alu 1 324 0 21 0 0 0 chr1 181791326 181791347 -60873006 + AT_rich Low_complexity Low_complexity 1 21 0 1449 245 179 60 chr1 181792130 181793024 -60871329 - L1MC4 LINE L1 -2 8040 7041 555 283 34 11 chr1 181793027 181793204 -60871149 - L1MC4 LINE L1 -1063 6979 6799 24 0 0 0 chr1 181793308 181793332 -60871021 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr1 181793376 181793409 -60870944 + AT_rich Low_complexity Low_complexity 1 33 0 798 295 34 4 chr1 181795881 181796118 -60868235 - L1MEc LINE L1 -5484 1056 813 27 0 0 0 chr1 181796870 181796897 -60867456 + AT_rich Low_complexity Low_complexity 1 27 0 251 313 47 20 chr1 181797076 181797226 -60867127 - MARNA DNA Mariner -111 475 322 219 364 25 68 chr1 181797387 181797549 -60866804 - L2 LINE L2 -194 3078 2924 22 0 0 0 chr1 181798628 181798650 -60865703 + AT_rich Low_complexity Low_complexity 1 22 0 295 256 207 39 chr1 181799205 181799594 -60864759 + MLT1H LTR MaLR 1 538 -11 253 257 110 0 chr1 181799860 181799969 -60864384 + L1MC4a LINE L1 6037 6157 -1651 504 259 28 69 chr1 181800384 181800631 -60863722 + L1MC5 LINE L1 6636 6872 -1089 1952 219 64 83 chr1 181800785 181801378 -60862975 - MLT1E LTR MaLR -2 591 10 443 266 54 16 chr1 181801383 181801567 -60862786 + L1MC5 LINE L1 6997 7187 -774 369 264 85 27 chr1 181801843 181802101 -60862252 + L1MC5 LINE L1 7542 7814 -147 2014 207 72 0 chr1 181802210 181802615 -60861738 + Tigger7 DNA MER2_type 1 434 -2053 425 190 101 0 chr1 181802605 181802684 -60861669 + Tigger7 DNA MER2_type 2387 2473 -14 * 29 60 0 0 chr1 181802693 181802743 -60861610 + AT_rich Low_complexity Low_complexity 1 50 0 455 267 64 11 chr1 181802789 181802976 -60861377 - Charlie2a DNA MER1_type -955 1907 1711 542 273 26 48 chr1 181803003 181803230 -60861123 - L1ME2 LINE L1 -9 6155 5934 519 235 30 0 chr1 181803281 181803413 -60860940 + MER97b DNA MER1_type? 47 182 -871 526 253 63 16 chr1 181803510 181803700 -60860653 - L1ME2 LINE L1 -283 5881 5683 1347 262 74 40 chr1 181803712 181804657 -60859696 - L1ME2 LINE L1 -552 5612 4639 2028 256 50 0 chr1 181804804 181805410 -60858943 + L1 LINE L1 4099 4734 -1412 714 315 29 52 chr1 181805519 181805865 -60858488 + LTR16C LTR ERVL 154 491 0 226 223 0 85 chr1 181806870 181806964 -60857389 - L1MC4 LINE L1 -1339 6703 6618 2584 43 0 0 chr1 181807730 181808032 -60856321 - AluY SINE Alu -9 302 1 344 306 47 57 chr1 181808159 181808352 -60856001 - L1ME3A LINE L1 -313 5857 5667 2437 142 9 33 chr1 181808444 181808867 -60855486 + MER4A LTR ERV1 252 664 0 23 97 0 0 chr1 181810212 181810284 -60854069 + AT_rich Low_complexity Low_complexity 1 72 0 27 0 0 0 chr1 181811987 181812014 -60852339 + AT_rich Low_complexity Low_complexity 1 27 0 10180 197 39 17 chr1 181813203 181815051 -60849302 - L1MA3 LINE L1 0 7724 5918 1891 156 51 23 chr1 181815051 181815403 -60848950 - THE1B LTR MaLR -2 362 1 11063 113 4 0 chr1 181815403 181816977 -60847376 - THE1B-int LTR MaLR 0 1580 1 1936 136 60 26 chr1 181816977 181817329 -60847024 - THE1B LTR MaLR 0 364 1 10180 197 39 17 chr1 181817329 181819000 -60845353 - L1MA3 LINE L1 -1805 5919 4134 7657 222 34 15 chr1 181818993 181821362 -60842991 - L1MA3 LINE L1 -4471 3094 16 * 286 302 10 21 chr1 181821969 181822065 -60842288 - L2 LINE L2 -7 3306 3212 2059 218 46 11 chr1 181822525 181822980 -60841373 - MER70A LTR ERVL -1 471 1 2090 114 0 19 chr1 181823645 181823953 -60840400 - AluSx SINE Alu -10 302 1 182 241 76 51 chr1 181824000 181824079 -60840274 + L3 LINE CR1 696 776 -801 6578 148 38 12 chr1 181824687 181826537 -60837816 - L1MA3 LINE L1 0 6305 4387 204 40 0 0 chr1 181826537 181826562 -60837791 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 6578 148 38 12 chr1 181826562 181826715 -60837638 - L1MA3 LINE L1 -1918 4387 4240 23 0 0 0 chr1 181826988 181827011 -60837342 + AT_rich Low_complexity Low_complexity 1 23 0 396 368 108 26 chr1 181827301 181827774 -60836579 - L1ME LINE L1 -389 5781 5268 25 65 0 0 chr1 181827775 181827821 -60836532 + AT_rich Low_complexity Low_complexity 1 46 0 287 246 0 33 chr1 181827973 181828034 -60836319 - L2 LINE L2 -1 3312 3254 387 56 0 0 chr1 181830768 181830822 -60833531 + (T)n Simple_repeat Simple_repeat 1 54 0 256 288 124 8 chr1 181831992 181832165 -60832188 - L1ME LINE L1 -1310 4836 4644 472 319 66 22 chr1 181832675 181832948 -60831405 - L1ME3 LINE L1 -235 5935 5651 681 244 0 0 chr1 181832950 181833085 -60831268 + MER5A DNA MER1_type 1 135 -54 21 36 0 0 chr1 181834752 181834780 -60829573 + AT_rich Low_complexity Low_complexity 1 28 0 566 250 12 41 chr1 181835585 181835704 -60828649 + MLT1F1 LTR MaLR 7 121 -446 2156 127 0 0 chr1 181835704 181836004 -60828349 + AluSx SINE Alu 1 300 -12 566 250 12 41 chr1 181836004 181836056 -60828297 + MLT1F1 LTR MaLR 121 173 -394 718 200 27 49 chr1 181836057 181836242 -60828111 - FRAM SINE Alu 0 176 1 3362 144 9 18 chr1 181836242 181836810 -60827543 + L1PB4 LINE L1 5556 6118 -38 42 0 0 0 chr1 181836814 181836856 -60827497 + AT_rich Low_complexity Low_complexity 1 42 0 353 291 275 12 chr1 181836858 181837116 -60827237 + MLT1F1 LTR MaLR 157 482 -60 419 361 91 5 chr1 181837895 181838114 -60826239 - MIR SINE MIR -13 249 12 22 70 0 0 chr1 181838804 181838847 -60825506 + AT_rich Low_complexity Low_complexity 1 43 0 371 221 52 7 chr1 181839182 181839318 -60825035 + CT-rich Low_complexity Low_complexity 1 142 0 5064 179 29 14 chr1 181840319 181841397 -60822956 - L1MA4 LINE L1 -9 6291 5200 23 0 0 0 chr1 181842263 181842286 -60822067 + AT_rich Low_complexity Low_complexity 1 23 0 1127 282 63 32 chr1 181842928 181843452 -60820901 - MLT1F LTR MaLR 0 542 3 274 231 14 88 chr1 181843467 181843529 -60820824 + MIR3 SINE MIR 100 150 -58 514 295 62 24 chr1 181843529 181843739 -60820614 - MER58A DNA MER1_type -3 221 4 274 231 14 88 chr1 181843739 181843790 -60820563 + MIR3 SINE MIR 150 203 -5 1457 225 33 50 chr1 181843891 181844287 -60820066 + MLT1B LTR MaLR 1 389 -1 826 305 139 37 chr1 181844310 181844901 -60819452 + L2 LINE L2 1652 2302 -1012 1743 156 33 16 chr1 181844924 181845231 -60819122 + MER1B DNA MER1_type 28 339 0 2369 160 70 0 chr1 181845412 181845855 -60818498 + MER101 LTR ERV1 1 474 0 457 208 21 28 chr1 181846210 181846354 -60817999 - MER63 DNA MER1_type -815 246 104 746 352 103 2 chr1 181846410 181846847 -60817506 + L2 LINE L2 2451 2931 -383 1234 227 84 0 chr1 181846891 181847045 -60817308 - AluJo SINE Alu -5 297 157 273 38 19 38 chr1 181847045 181847098 -60817255 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1234 227 84 0 chr1 181847098 181847216 -60817137 - AluJo SINE Alu -145 157 2 4995 153 25 3 chr1 181847359 181848240 -60816113 + L1PB1 LINE L1 1362 2261 -4602 14434 202 16 11 chr1 181848240 181852253 -60812100 + L1PB1 LINE L1 2504 6505 -362 217 182 36 0 chr1 181852255 181852310 -60812043 + (ATATG)n Simple_repeat Simple_repeat 2 58 0 2306 131 11 0 chr1 181852311 181852669 -60811684 + L1PB1 LINE L1 6498 6859 -8 21 0 0 0 chr1 181852674 181852695 -60811658 + AT_rich Low_complexity Low_complexity 1 21 0 253 326 41 0 chr1 181852695 181852723 -60811630 + L2 LINE L2 3193 3218 -95 285 75 0 0 chr1 181852723 181852763 -60811590 + (TG)n Simple_repeat Simple_repeat 2 41 0 253 326 41 0 chr1 181852763 181852832 -60811521 + L2 LINE L2 3218 3294 -19 230 385 7 7 chr1 181852830 181852978 -60811375 + L2 LINE L2 3162 3309 -4 * 1228 271 67 25 chr1 181853223 181853626 -60810727 + MER77 LTR ERV1 176 595 -10 726 238 43 4 chr1 181853962 181854197 -60810156 + L1MC1 LINE L1 4431 4674 -1472 272 305 168 0 chr1 181854257 181854388 -60809965 + MER58B DNA MER1_type 189 341 0 929 222 22 0 chr1 181854494 181854679 -60809674 - MER20 DNA MER1_type -27 192 4 470 269 81 46 chr1 181854690 181854973 -60809380 + L1MC1 LINE L1 4751 5043 -1103 683 270 69 33 chr1 181855001 181855394 -60808959 + L1ME1 LINE L1 4925 5331 -815 2336 263 50 9 chr1 181855421 181856184 -60808169 + L1ME1 LINE L1 5366 6159 -7 29 47 0 0 chr1 181856511 181856554 -60807799 + AT_rich Low_complexity Low_complexity 1 43 0 270 352 144 22 chr1 181856781 181857238 -60807115 - L2 LINE L2 -511 2803 2291 388 173 0 19 chr1 181857350 181857454 -60806899 + (TA)n Simple_repeat Simple_repeat 1 102 0 187 357 65 13 chr1 181857476 181857630 -60806723 - L2 LINE L2 -1222 2092 1931 392 244 84 23 chr1 181857706 181857837 -60806516 - MIR SINE MIR -8 254 116 3155 179 16 21 chr1 181857847 181857899 -60806454 - MER6A DNA MER2_type -260 605 554 2118 61 10 24 chr1 181857899 181858194 -60806159 + AluY SINE Alu 1 291 -20 3155 179 16 21 chr1 181858194 181858749 -60805604 - MER6A DNA MER2_type -311 554 1 25 0 0 0 chr1 181858948 181858973 -60805380 + AT_rich Low_complexity Low_complexity 1 25 0 2088 73 0 31 chr1 181859096 181859382 -60804971 - AluY SINE Alu -11 300 24 307 255 0 51 chr1 181859746 181859844 -60804509 + MER97c DNA MER1_type? 3 95 -995 557 273 45 25 chr1 181859867 181860065 -60804288 + MER97b DNA MER1_type? 372 573 -480 2019 218 11 45 chr1 181860222 181860694 -60803659 + L1PB4 LINE L1 5700 6155 -1 * 4955 183 31 9 chr1 181860687 181861680 -60802673 + L1MC1 LINE L1 5295 6309 -24 31 58 0 0 chr1 181861697 181861749 -60802604 + AT_rich Low_complexity Low_complexity 1 52 0 37 76 0 0 chr1 181861830 181861909 -60802444 + AT_rich Low_complexity Low_complexity 1 79 0 2574 55 0 0 chr1 181863823 181864132 -60800221 - AluY SINE Alu -2 309 1 1955 121 52 3 chr1 181864387 181864676 -60799677 - AluSx SINE Alu -9 303 1 24 0 0 0 chr1 181865297 181865321 -60799032 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr1 181865513 181865547 -60798806 + AT_rich Low_complexity Low_complexity 1 34 0 7397 35 5 0 chr1 181865547 181866880 -60797473 - L1PA4 LINE L1 -3 6152 4818 484 17 0 0 chr1 181866880 181866939 -60797414 + L1PA4 LINE L1 4762 4820 -1326 25 0 0 0 chr1 181867080 181867105 -60797248 + AT_rich Low_complexity Low_complexity 1 25 0 228 219 96 41 chr1 181867828 181867901 -60796452 - L2 LINE L2 0 3313 3237 29 0 0 0 chr1 181867957 181867986 -60796367 + AT_rich Low_complexity Low_complexity 1 29 0 1140 278 88 12 chr1 181868094 181868504 -60795849 - LTR40a LTR ERVL 0 519 79 277 236 42 0 chr1 181868558 181868630 -60795723 - Charlie2 DNA MER1_type -166 2696 2622 495 196 112 47 chr1 181868732 181868801 -60795552 - Charlie2 DNA MER1_type -420 2442 2379 5577 120 21 12 chr1 181868801 181869157 -60795196 - L1PB1 LINE L1 -3 6148 5797 216 0 0 0 chr1 181869157 181869181 -60795172 + (TG)n Simple_repeat Simple_repeat 2 25 0 5577 120 21 12 chr1 181869181 181869885 -60794468 - L1PB1 LINE L1 -354 5797 5068 495 196 112 47 chr1 181869885 181870091 -60794262 - Charlie2 DNA MER1_type -483 2379 2149 3008 195 54 25 chr1 181870102 181870904 -60793449 - L1MB1 LINE L1 -245 5923 5069 2100 140 0 0 chr1 181870904 181871204 -60793149 + AluSx SINE Alu 1 300 -12 3008 195 54 25 chr1 181871204 181871627 -60792726 - L1MB1 LINE L1 -1099 5069 4660 198 0 0 0 chr1 181871666 181871688 -60792665 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 960 122 0 0 chr1 181871690 181871821 -60792532 - AluSg/x SINE Alu -30 280 150 2090 220 42 6 chr1 181871870 181872347 -60792006 + MER67C LTR ERV1 1 494 -216 503 178 10 0 chr1 181872342 181872443 -60791910 + MER67C LTR ERV1 609 710 0 * 790 149 0 8 chr1 181873429 181873563 -60790790 + FLAM_C SINE Alu 1 133 0 1844 87 0 12 chr1 181875077 181875329 -60789024 + AluY SINE Alu 63 311 0 26 50 0 0 chr1 181875689 181875729 -60788624 + AT_rich Low_complexity Low_complexity 1 40 0 321 263 23 91 chr1 181876028 181876203 -60788150 + LTR68 LTR ERV1 1 163 -577 297 313 61 8 chr1 181876370 181876501 -60787852 + LTR68 LTR ERV1 297 434 -306 25 0 0 0 chr1 181876941 181876966 -60787387 + AT_rich Low_complexity Low_complexity 1 25 0 318 236 100 27 chr1 181878737 181878847 -60785506 + LTR37A LTR ERV1 4 121 -305 251 184 0 0 chr1 181878844 181878891 -60785462 - Tigger7 DNA MER2_type -36 2455 2409 413 230 0 11 chr1 181878891 181878978 -60785375 - Tigger5 DNA MER2_type 0 2323 2238 232 195 0 0 chr1 181879004 181879045 -60785308 - Tigger5 DNA MER2_type -2282 41 1 620 262 21 0 chr1 181879061 181879202 -60785151 - Tigger7 DNA MER2_type -2220 267 124 282 289 51 121 chr1 181880395 181880727 -60783626 - L2 LINE L2 -9 3304 2996 513 88 0 0 chr1 181880727 181880795 -60783558 - AluSp/q SINE Alu -16 297 230 211 378 14 40 chr1 181880795 181880943 -60783410 - L2 LINE L2 -339 2974 2831 28 61 0 0 chr1 181882994 181883043 -60781310 + AT_rich Low_complexity Low_complexity 1 49 0 440 268 16 77 chr1 181883051 181883234 -60781119 - LTR41 LTR ERVL -594 179 8 32 75 0 0 chr1 181883334 181883401 -60780952 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chr1 181884078 181884108 -60780245 + AT_rich Low_complexity Low_complexity 1 30 0 761 169 11 11 chr1 181884852 181885029 -60779324 + GA-rich Low_complexity Low_complexity 2 178 0 503 267 86 73 chr1 181885267 181885570 -60778783 + L1MEd LINE L1 795 1101 -5018 282 143 0 0 chr1 181885591 181885640 -60778713 + (CA)n Simple_repeat Simple_repeat 2 50 0 407 218 0 11 chr1 181885733 181885820 -60778533 + Tigger5 DNA MER2_type 2234 2319 -4 668 63 0 11 chr1 181885820 181885915 -60778438 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 290 278 73 80 chr1 181886180 181886792 -60777561 - L1MEd LINE L1 -4771 1625 1018 3262 173 12 8 chr1 181888294 181888894 -60775459 - MER7C DNA MER2_type 0 602 1 247 327 84 0 chr1 181889461 181889568 -60774785 - L2 LINE L2 -2 3311 3196 29 0 0 0 chr1 181889784 181889813 -60774540 + AT_rich Low_complexity Low_complexity 1 29 0 2773 193 45 7 chr1 181890264 181890903 -60773450 - L1MC2 LINE L1 -474 5870 5204 1223 335 43 10 chr1 181890906 181891389 -60772964 - L2 LINE L2 -1001 2313 1815 23 0 0 0 chr1 181892911 181892934 -60771419 + AT_rich Low_complexity Low_complexity 1 23 0 384 326 30 0 chr1 181894068 181894203 -60770150 + MIR SINE MIR 29 167 -95 3937 164 32 11 chr1 181894584 181895326 -60769027 - L1PA16 LINE L1 -1 6165 5408 7079 193 54 15 chr1 181895389 181896378 -60767975 - L1PA16 LINE L1 -741 5425 4341 321 82 0 0 chr1 181896378 181896427 -60767926 + (TG)n Simple_repeat Simple_repeat 2 50 0 7079 193 54 15 chr1 181896427 181897210 -60767143 - L1PA16 LINE L1 -1825 4341 3590 23 33 0 0 chr1 181897617 181897647 -60766706 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr1 181898600 181898624 -60765729 + (TA)n Simple_repeat Simple_repeat 1 24 0 1095 137 16 44 chr1 181898630 181898813 -60765540 - AluSg/x SINE Alu -30 282 105 3702 153 14 2 chr1 181900273 181900900 -60763453 - L1PA16 LINE L1 -9 6157 5523 532 292 140 66 chr1 181901905 181902268 -60762085 + L2 LINE L2 2869 3267 -46 2343 78 0 0 chr1 181902268 181902564 -60761789 + AluY SINE Alu 4 299 -12 532 292 140 66 chr1 181902564 181902607 -60761746 + L2 LINE L2 3267 3305 -8 1745 161 8 77 chr1 181902898 181903290 -60761063 - Tigger1 DNA MER2_type 0 2418 2054 * 7092 148 15 49 chr1 181903277 181904633 -60759720 - Tigger1 DNA MER2_type -1108 1310 1 1393 282 50 18 chr1 181905596 181906099 -60758254 - LTR40a LTR ERVL 0 519 1 296 263 69 38 chr1 181906989 181907149 -60757204 - MIR SINE MIR -62 200 36 724 221 36 3 chr1 181908299 181908537 -60755816 - L1PA16 LINE L1 -702 5481 5275 1942 93 24 14 chr1 181908539 181908829 -60755524 - L1PA8A LINE L1 0 6131 5839 8265 188 37 7 chr1 181908834 181909507 -60754846 - L1PA14 LINE L1 -3 6158 5507 1759 150 40 37 chr1 181909507 181909881 -60754472 - THE1C LTR MaLR 0 375 1 8265 188 37 7 chr1 181909881 181911723 -60752630 - L1PA14 LINE L1 -654 5507 3554 3377 212 32 31 chr1 181911723 181912696 -60751657 - L1 LINE L1 -816 6749 5776 1915 239 25 33 chr1 181912707 181913305 -60751048 + L1PA16 LINE L1 4741 5333 -813 1158 210 114 7 chr1 181913306 181913611 -60750742 + AluJb SINE Alu 2 335 0 237 98 24 0 chr1 181913613 181913654 -60750699 + L1PA16 LINE L1 5317 5358 -808 4152 155 44 9 chr1 181913657 181914407 -60749946 + L1PA16 LINE L1 5336 6111 -55 593 260 10 5 chr1 181914558 181914750 -60749603 - L1 LINE L1 -4414 3151 2959 26 82 0 0 chr1 181915654 181915715 -60748638 + AT_rich Low_complexity Low_complexity 1 61 0 341 348 0 7 chr1 181915756 181915897 -60748456 + L1ME LINE L1 5539 5678 -443 355 259 146 73 chr1 181916690 181916895 -60747458 + HAL1 LINE L1 1242 1461 -1046 665 268 24 6 chr1 181917404 181917572 -60746781 - MER45A DNA AcHobo 0 178 8 1301 149 159 23 chr1 181918361 181918663 -60745690 - MER61A LTR ERV1 0 343 1 4691 117 42 13 chr1 181918664 181919026 -60745327 - MER61A-int LTR ERV1 -1 5216 4866 1891 112 52 3 chr1 181919026 181919312 -60745041 + AluSc SINE Alu 1 300 -9 4691 117 42 13 chr1 181919312 181919703 -60744650 - MER61A-int LTR ERV1 -351 4866 4441 240 170 38 0 chr1 181921222 181921275 -60743078 + Alu SINE Alu 246 300 0 21 36 0 0 chr1 181921355 181921383 -60742970 + AT_rich Low_complexity Low_complexity 1 28 0 1037 149 202 16 chr1 181923420 181923668 -60740685 + AluSg SINE Alu 1 294 -6 891 215 6 18 chr1 181923918 181924156 -60740197 - L1MB5 LINE L1 -240 5934 5716 42 20 0 0 chr1 181924434 181924483 -60739870 + AT_rich Low_complexity Low_complexity 1 49 0 3268 191 77 46 chr1 181926169 181927072 -60737281 - L1MB7 LINE L1 -64 6120 5188 221 139 23 0 chr1 181927080 181927123 -60737230 + CT-rich Low_complexity Low_complexity 2 45 0 283 245 43 0 chr1 181927235 181927329 -60737024 - L1MB7 LINE L1 -3012 3134 3037 2409 154 23 18 chr1 181927351 181927582 -60736771 - L1PA16 LINE L1 -2 6164 5929 2163 107 75 23 chr1 181927582 181927928 -60736425 - THE1B LTR MaLR 0 364 1 2409 154 23 18 chr1 181927928 181928138 -60736215 - L1PA16 LINE L1 -237 5929 5721 181 367 129 20 chr1 181928396 181928543 -60735810 - L2 LINE L2 -901 2413 2251 452 171 0 0 chr1 181928610 181928680 -60735673 - MER8 DNA MER2_type 0 239 170 673 209 11 88 chr1 181928729 181928911 -60735442 - MER8 DNA MER2_type -71 168 1 1382 168 71 41 chr1 181930012 181930376 -60733977 - THE1C LTR MaLR 0 375 1 606 302 69 5 chr1 181930482 181930671 -60733682 + MER63A DNA MER1_type 2 202 -8 2293 260 53 10 chr1 181930846 181931566 -60732787 - Charlie1a DNA MER1_type -662 793 43 339 281 55 8 chr1 181931949 181932077 -60732276 + MLT1J LTR MaLR 376 509 -2 755 208 63 0 chr1 181932107 181932266 -60732087 - FRAM SINE Alu -7 169 1 180 0 0 0 chr1 181933469 181933489 -60730864 + (TA)n Simple_repeat Simple_repeat 2 21 0 22 80 0 0 chr1 181933742 181933792 -60730561 + AT_rich Low_complexity Low_complexity 1 50 0 1177 155 15 5 chr1 181934811 181935011 -60729342 - AluSg/x SINE Alu -7 305 104 207 0 0 0 chr1 181935691 181935714 -60728639 + (CA)n Simple_repeat Simple_repeat 2 24 0 303 28 0 0 chr1 181936319 181936355 -60727998 + (CA)n Simple_repeat Simple_repeat 1 36 0 698 327 27 16 chr1 181936806 181937063 -60727290 - MIR SINE MIR -2 260 1 316 296 37 0 chr1 181937133 181937241 -60727112 + HAL1 LINE L1 992 1103 -1404 504 0 0 0 chr1 181937328 181937384 -60726969 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1939 83 14 14 chr1 181937387 181937665 -60726688 - AluY SINE Alu -32 279 2 322 287 78 35 chr1 181938769 181938999 -60725354 + L1 LINE L1 4194 4433 -1713 228 301 150 15 chr1 181939287 181939420 -60724933 + MIR SINE MIR 64 214 -48 207 162 0 0 chr1 181939447 181939484 -60724869 + (ATG)n Simple_repeat Simple_repeat 2 38 0 4181 98 3 8 chr1 181939776 181940129 -60724224 - L1PB2 LINE L1 -5 6146 5796 192 77 0 0 chr1 181940129 181940155 -60724198 + (TATG)n Simple_repeat Simple_repeat 4 29 0 4181 98 3 8 chr1 181940155 181940405 -60723948 - L1PB2 LINE L1 -355 5796 5546 298 106 0 0 chr1 181940656 181940703 -60723650 + L1 LINE L1 4274 4320 -1826 513 325 73 39 chr1 181940852 181941237 -60723116 - L2 LINE L2 -108 3205 2808 23 0 0 0 chr1 181941445 181941468 -60722885 + AT_rich Low_complexity Low_complexity 1 23 0 271 323 46 0 chr1 181941587 181941717 -60722636 - L1MC4 LINE L1 -1153 6889 6754 21 0 0 0 chr1 181943232 181943253 -60721100 + AT_rich Low_complexity Low_complexity 1 21 0 382 265 31 15 chr1 181943621 181943832 -60720521 - L1M LINE L1 -744 5418 5201 238 233 60 68 chr1 181943833 181943966 -60720387 - L1M4 LINE L1 -993 5153 5022 2149 121 7 0 chr1 181944124 181944458 -60719895 + AluSg SINE Alu 1 336 0 181 287 104 52 chr1 181944459 181944574 -60719779 - MIR SINE MIR -128 134 14 23 0 0 0 chr1 181944718 181944741 -60719612 + AT_rich Low_complexity Low_complexity 1 23 0 236 303 57 33 chr1 181946001 181946123 -60718230 + L2 LINE L2 3142 3266 -47 21 0 0 0 chr1 181946412 181946433 -60717920 + AT_rich Low_complexity Low_complexity 1 21 0 2035 137 3 13 chr1 181946499 181946814 -60717539 - AluSx SINE Alu 0 312 1 2271 102 3 0 chr1 181947727 181948031 -60716322 + AluSp SINE Alu 1 305 -8 22 35 0 0 chr1 181948135 181948164 -60716189 + AT_rich Low_complexity Low_complexity 1 29 0 228 337 57 74 chr1 181948607 181948782 -60715571 + L2 LINE L2 2637 2808 -506 370 264 71 29 chr1 181949029 181949169 -60715184 + MIR SINE MIR 52 197 -65 30 0 0 0 chr1 181949204 181949234 -60715119 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr1 181950396 181950423 -60713930 + AT_rich Low_complexity Low_complexity 1 27 0 233 312 13 78 chr1 181951551 181951705 -60712648 + L2 LINE L2 2566 2709 -605 364 358 160 16 chr1 181951797 181952166 -60712187 + L2 LINE L2 2863 3284 -29 2256 205 121 4 chr1 181952963 181953466 -60710887 - MLT1F1 LTR MaLR -5 562 1 213 297 7 41 chr1 181953641 181953786 -60710567 + (CAATA)n Simple_repeat Simple_repeat 4 143 0 264 289 18 27 chr1 181954834 181954978 -60709375 + MIR SINE MIR 23 146 -62 317 340 59 47 chr1 181955125 181955381 -60708972 - MLT1J1 LTR MaLR -131 315 57 245 362 75 0 chr1 181955419 181955513 -60708840 + MIR SINE MIR 154 254 -8 215 292 100 39 chr1 181957810 181957940 -60706413 - MIR SINE MIR -59 203 66 253 349 54 16 chr1 181957989 181958118 -60706235 + MLT1I LTR MaLR 73 206 -203 313 354 66 38 chr1 181958157 181958445 -60705908 - MLT1I LTR MaLR -18 391 96 22 94 0 0 chr1 181958682 181958746 -60705607 + AT_rich Low_complexity Low_complexity 1 64 0 28 61 0 0 chr1 181958870 181958919 -60705434 + AT_rich Low_complexity Low_complexity 1 49 0 180 427 67 0 chr1 181959109 181959184 -60705169 + L2 LINE L2 3112 3191 -81 384 277 145 25 chr1 181959244 181959479 -60704874 - L2 LINE L2 -124 3189 2927 477 303 61 43 chr1 181960139 181960416 -60703937 - MLT1J LTR MaLR -229 282 1 284 230 40 0 chr1 181960793 181960867 -60703486 + MIR3 SINE MIR 132 208 0 22 35 0 0 chr1 181961187 181961216 -60703137 + AT_rich Low_complexity Low_complexity 1 29 0 1614 219 57 26 chr1 181961416 181961800 -60702553 - MSTD LTR MaLR 0 396 1 955 265 21 71 chr1 181962373 181962713 -60701640 - LTR40a LTR ERVL -2 517 138 880 196 83 116 chr1 181962994 181963103 -60701250 - MLT1C LTR MaLR 0 390 279 1255 36 6 24 chr1 181963103 181963268 -60701085 - L1PA4 LINE L1 -3 6152 5991 880 196 83 116 chr1 181963268 181963556 -60700797 - MLT1C LTR MaLR -111 279 6 223 254 0 0 chr1 181963583 181963638 -60700715 + (TGAA)n Simple_repeat Simple_repeat 3 57 0 24 32 0 0 chr1 181964522 181964553 -60699800 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr1 181964602 181964627 -60699726 + (CAGTA)n Simple_repeat Simple_repeat 1 25 0 2073 94 3 33 chr1 181965040 181965339 -60699014 + AluSg1 SINE Alu 1 290 -19 30 0 0 0 chr1 181965339 181965369 -60698984 + AT_rich Low_complexity Low_complexity 1 30 0 1731 137 9 44 chr1 181966255 181966576 -60697777 + AluSg SINE Alu 1 310 0 502 232 89 106 chr1 181967374 181967620 -60696733 + MIR SINE MIR 18 259 -3 21 0 0 0 chr1 181967646 181967667 -60696686 + AT_rich Low_complexity Low_complexity 1 21 0 348 269 77 74 chr1 181968073 181968490 -60695863 + L1MC5 LINE L1 7365 7782 -179 720 353 72 11 chr1 181970881 181971481 -60692872 - L2 LINE L2 -19 3294 2653 363 44 0 0 chr1 181971481 181971526 -60692827 + (CA)n Simple_repeat Simple_repeat 2 46 0 2072 156 108 10 chr1 181971662 181972052 -60692301 - MSTA LTR MaLR 0 428 1 235 323 65 39 chr1 181972107 181972262 -60692091 - MIR3 SINE MIR -6 202 44 234 206 0 0 chr1 181972724 181972787 -60691566 + GA-rich Low_complexity Low_complexity 4 66 0 353 206 36 66 chr1 181972921 181973042 -60691311 - L1MA9 LINE L1 -7 6284 6167 308 286 88 41 chr1 181974325 181974601 -60689752 - MLT1J LTR MaLR -206 305 15 1893 54 8 39 chr1 181974844 181975102 -60689251 - AluY SINE Alu -4 307 58 191 377 31 39 chr1 181975839 181975969 -60688384 + MIR SINE MIR 114 242 -20 3051 174 0 56 chr1 181975974 181976561 -60687792 - MLT2B3 LTR ERVL 0 554 1 205 308 0 39 chr1 181978165 181978243 -60686110 + L3 LINE CR1 326 400 -1177 232 366 49 32 chr1 181978321 181978444 -60685909 - L2 LINE L2 -44 3228 3104 22 0 0 0 chr1 181978847 181978869 -60685484 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 181979131 181979160 -60685193 + AT_rich Low_complexity Low_complexity 1 29 0 302 48 0 0 chr1 181979336 181979378 -60684975 + L1PA2 LINE L1 6107 6148 -7 24 32 0 0 chr1 181979378 181979409 -60684944 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr1 181979569 181979598 -60684755 + AT_rich Low_complexity Low_complexity 1 29 0 25 83 0 0 chr1 181979729 181979789 -60684564 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr1 181980206 181980227 -60684126 + AT_rich Low_complexity Low_complexity 1 21 0 377 314 81 51 chr1 181980381 181980617 -60683736 + MIR SINE MIR 10 252 -10 231 36 0 0 chr1 181980740 181980768 -60683585 + (TG)n Simple_repeat Simple_repeat 2 29 0 216 204 37 0 chr1 181981181 181981235 -60683118 + L3b LINE CR1 1135 1190 -393 323 239 131 31 chr1 181981624 181981754 -60682599 - MIR SINE MIR 0 262 120 22 35 0 0 chr1 181981975 181982004 -60682349 + AT_rich Low_complexity Low_complexity 1 29 0 262 282 90 13 chr1 181982510 181982588 -60681765 - MER5A DNA MER1_type -38 151 68 214 233 17 17 chr1 181983401 181983461 -60680892 + CT-rich Low_complexity Low_complexity 2 61 0 272 244 26 35 chr1 181984432 181984547 -60679806 + GA-rich Low_complexity Low_complexity 3 116 0 1556 217 80 3 chr1 181984859 181985223 -60679130 - MSTD LTR MaLR 0 396 5 295 342 51 36 chr1 181985547 181985743 -60678610 - L2 LINE L2 -1 3312 3114 353 323 31 63 chr1 181985844 181986098 -60678255 - MIR SINE MIR -15 247 2 279 0 0 0 chr1 181986726 181986757 -60677596 + (TG)n Simple_repeat Simple_repeat 2 32 0 23 68 0 0 chr1 181990734 181990778 -60673575 + AT_rich Low_complexity Low_complexity 1 44 0 330 98 0 0 chr1 181991175 181991226 -60673127 + (TC)n Simple_repeat Simple_repeat 1 51 0 35 41 0 0 chr1 181992696 181992745 -60671608 + AT_rich Low_complexity Low_complexity 1 49 0 310 313 61 51 chr1 181993103 181993397 -60670956 + L1M4 LINE L1 4504 4800 -1346 654 191 52 48 chr1 181993618 181993849 -60670504 - Charlie5 DNA MER1_type 0 2623 2392 976 140 0 80 chr1 181993872 181994072 -60670281 - AluSg/x SINE Alu 0 312 129 226 300 54 58 chr1 181994496 181994773 -60669580 - L1MEd LINE L1 -5841 278 3 198 0 0 0 chr1 181996188 181996210 -60668143 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2129 92 0 4 chr1 181996212 181996493 -60667860 - AluSx SINE Alu -26 286 7 27 87 0 0 chr1 181996805 181996874 -60667479 + AT_rich Low_complexity Low_complexity 1 69 0 1203 291 79 18 chr1 181997011 181997804 -60666549 + L1MEc LINE L1 1971 2763 -3452 1112 217 50 0 chr1 181997792 181998050 -60666303 - L1MC3 LINE L1 -398 7387 7117 * 971 172 0 43 chr1 181998040 181998226 -60666127 - L1MC3 LINE L1 -960 6825 6648 * 740 142 64 73 chr1 181998275 181998494 -60665859 + L1MC3 LINE L1 7559 7775 -10 26 50 0 0 chr1 181998545 181998585 -60665768 + AT_rich Low_complexity Low_complexity 1 40 0 246 315 19 74 chr1 181998633 181998741 -60665612 + MLT1J2 LTR MaLR 39 140 -310 183 304 51 13 chr1 181999895 181999974 -60664379 - L2 LINE L2 0 3313 3232 393 254 173 0 chr1 182000124 182000234 -60664119 - FLAM_C SINE Alu -3 130 2 315 0 0 0 chr1 182000823 182000858 -60663495 + (TG)n Simple_repeat Simple_repeat 2 36 0 228 341 35 58 chr1 182001781 182002007 -60662346 + LTR67 LTR ERVL 41 261 -296 1956 139 0 3 chr1 182002092 182002387 -60661966 - AluSx SINE Alu -18 294 1 24 32 0 0 chr1 182003556 182003587 -60660766 + AT_rich Low_complexity Low_complexity 1 31 0 566 208 107 34 chr1 182004748 182004926 -60659427 + LTR67 LTR ERVL 367 557 0 292 297 0 54 chr1 182004973 182005047 -60659306 - L2 LINE L2 -9 3304 3235 644 256 82 5 chr1 182005184 182005379 -60658974 - MIR SINE MIR -13 249 40 24 53 0 0 chr1 182006970 182007008 -60657345 + AT_rich Low_complexity Low_complexity 1 38 0 1279 187 74 50 chr1 182007181 182007464 -60656889 + AluJo SINE Alu 2 291 -21 254 336 42 42 chr1 182007964 182008107 -60656246 + MLT2E LTR ERVL 12 154 -474 1359 234 89 39 chr1 182008946 182009438 -60654915 - Charlie1b DNA MER1_type 0 523 7 180 279 68 93 chr1 182009462 182009623 -60654730 - MIR SINE MIR -19 243 87 271 274 0 71 chr1 182009705 182009818 -60654535 - MER4-int LTR ERV1 -5390 1208 1104 2392 73 0 49 chr1 182012372 182012699 -60651654 - AluY SINE Alu 0 311 1 1669 161 62 9 chr1 182013026 182013349 -60651004 - MER2 DNA MER2_type 0 345 6 280 292 10 0 chr1 182013347 182013443 -60650910 + MER46C DNA MER2_type 241 337 -1 * 23 0 0 0 chr1 182013514 182013537 -60650816 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 182014806 182014833 -60649520 + AT_rich Low_complexity Low_complexity 1 27 0 422 356 7 7 chr1 182015020 182015169 -60649184 + MIR SINE MIR 2 150 -112 874 308 42 63 chr1 182015235 182015739 -60648614 + LTR68 LTR ERV1 114 606 -134 207 194 81 0 chr1 182015809 182015871 -60648482 + MIR SINE MIR 147 213 -49 22 35 0 0 chr1 182015970 182015999 -60648354 + AT_rich Low_complexity Low_complexity 1 29 0 1145 256 25 81 chr1 182016029 182016587 -60647766 - L1MD1 LINE L1 -7 6235 5709 3545 224 95 18 chr1 182016588 182017780 -60646573 - L1MDa LINE L1 -3983 2557 1274 225 200 55 0 chr1 182017989 182018044 -60646309 + MER77 LTR ERV1 177 234 -371 235 278 86 49 chr1 182018096 182018258 -60646095 + MER21B LTR ERV1 425 592 -271 1659 268 146 86 chr1 182018324 182019436 -60644917 - L1MDa LINE L1 -5285 1255 78 3666 162 8 12 chr1 182019454 182020120 -60644233 + L1PA16 LINE L1 5495 6157 -9 1839 166 49 9 chr1 182020133 182020656 -60643697 + L1M2 LINE L1 4942 5480 -748 443 52 0 0 chr1 182021076 182021134 -60643219 - L1MA5A LINE L1 -123 6174 6117 721 180 7 0 chr1 182021135 182021274 -60643079 + L1MA5A LINE L1 6146 6285 -12 27 0 0 0 chr1 182021281 182021308 -60643045 + AT_rich Low_complexity Low_complexity 1 27 0 1864 128 39 7 chr1 182021313 182021595 -60642758 + AluSq SINE Alu 1 291 -22 8341 192 26 19 chr1 182022299 182023983 -60640370 - L1M2 LINE L1 -743 6822 5162 1893 113 7 14 chr1 182023983 182024266 -60640087 - AluSq SINE Alu -18 295 15 8341 192 26 19 chr1 182024266 182024594 -60639759 - L1M2 LINE L1 -2403 5162 4838 930 244 63 51 chr1 182024616 182025104 -60639249 - L1M2 LINE L1 -5055 2510 2017 1898 263 9 43 chr1 182025214 182025766 -60638587 - L1M2 LINE L1 -6491 998 466 333 259 37 0 chr1 182026400 182026481 -60637872 + MER5B DNA MER1_type 7 90 -88 3198 90 2 13 chr1 182026501 182026958 -60637395 - L1PA8A LINE L1 -4 6127 5676 22 35 0 0 chr1 182028298 182028327 -60636026 + AT_rich Low_complexity Low_complexity 1 29 0 542 190 26 17 chr1 182028709 182028825 -60635528 + MLT1D LTR MaLR 1 117 -388 1729 191 138 45 chr1 182028831 182029296 -60635057 + MER67D LTR ERV1 1 508 -6 540 247 86 11 chr1 182029449 182029623 -60634730 + MLT1D LTR MaLR 269 455 -12 52 17 0 0 chr1 182032136 182032195 -60632158 + AT_rich Low_complexity Low_complexity 1 59 0 1860 137 146 16 chr1 182032195 182032517 -60631836 - THE1B LTR MaLR 0 364 1 9596 128 11 42 chr1 182032518 182034149 -60630204 - THE1B-int LTR MaLR 0 1580 1 2317 148 8 0 chr1 182034149 182034508 -60629845 - THE1B LTR MaLR 0 364 3 228 100 0 0 chr1 182034994 182035034 -60629319 + (A)n Simple_repeat Simple_repeat 1 40 0 1712 163 59 36 chr1 182035834 182036190 -60628163 + THE1B LTR MaLR 1 364 0 10482 132 8 4 chr1 182036190 182037764 -60626589 + THE1B-int LTR MaLR 1 1580 0 1943 144 36 30 chr1 182037764 182038126 -60626227 + THE1B LTR MaLR 1 364 0 310 629 6 0 chr1 182038621 182038799 -60625554 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 259 193 0 0 chr1 182038803 182038860 -60625493 + L1MC4 LINE L1 6653 6709 -1333 459 0 0 0 chr1 182039106 182039157 -60625196 + (TA)n Simple_repeat Simple_repeat 2 52 0 473 354 108 29 chr1 182039584 182040073 -60624280 + L3 LINE CR1 1049 1576 -1 483 324 36 40 chr1 182040289 182040567 -60623786 + MLT1I LTR MaLR 71 347 -62 375 316 44 39 chr1 182040592 182040798 -60623555 + MLT1I LTR MaLR 141 347 -62 225 0 0 0 chr1 182041664 182041689 -60622664 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 465 284 133 94 chr1 182041803 182042260 -60622093 + L3 LINE CR1 820 1294 -283 228 100 0 0 chr1 182042309 182042349 -60622004 + (T)n Simple_repeat Simple_repeat 1 40 0 204 391 78 0 chr1 182042431 182042546 -60621807 + L3 LINE CR1 1419 1542 -35 1334 164 64 50 chr1 182043318 182043599 -60620754 - AluJo SINE Alu -27 285 1 1585 173 3 11 chr1 182043810 182044132 -60620221 - AluSx SINE Alu 0 324 5 328 342 57 47 chr1 182044151 182044344 -60620009 + MIR SINE MIR 45 239 -23 774 319 27 45 chr1 182044534 182044938 -60619415 - MLT1I LTR MaLR -8 401 5 1928 160 68 31 chr1 182046039 182046533 -60617820 + MLT2A2 LTR ERVL 1 509 -45 596 148 0 0 chr1 182046534 182046635 -60617718 + AluSg/x SINE Alu 210 310 -2 354 159 0 0 chr1 182046636 182046699 -60617654 + MLT2A2 LTR ERVL 391 453 0 234 200 40 0 chr1 182046991 182047041 -60617312 - FAM SINE Alu -1 174 123 1286 163 60 4 chr1 182047110 182047343 -60617010 - AluJo SINE Alu -59 253 8 593 392 97 48 chr1 182049284 182049871 -60614482 + L2 LINE L2 2669 3252 -61 222 355 138 0 chr1 182050193 182050331 -60614022 - L2 LINE L2 -952 2362 2206 26 0 0 0 chr1 182050618 182050644 -60613709 + AT_rich Low_complexity Low_complexity 1 26 0 217 87 87 0 chr1 182051278 182051324 -60613029 + A-rich Low_complexity Low_complexity 3 52 0 23 86 0 0 chr1 182052191 182052249 -60612104 + AT_rich Low_complexity Low_complexity 1 58 0 1156 289 92 46 chr1 182052282 182052764 -60611589 + L1ME3A LINE L1 5221 5679 -491 1570 158 83 47 chr1 182052764 182053126 -60611227 - THE1C LTR MaLR 0 375 1 1156 289 92 46 chr1 182053126 182053538 -60610815 + L1ME3A LINE L1 5679 6159 -11 2220 110 0 7 chr1 182054534 182054843 -60609510 + AluSq SINE Alu 5 311 -2 27 29 0 0 chr1 182054864 182054898 -60609455 + AT_rich Low_complexity Low_complexity 1 34 0 25 83 0 0 chr1 182055058 182055118 -60609235 + AT_rich Low_complexity Low_complexity 1 60 0 235 313 76 61 chr1 182055180 182055311 -60609042 - MIR3 SINE MIR -39 169 37 189 0 0 0 chr1 182055408 182055429 -60608924 + (TC)n Simple_repeat Simple_repeat 2 22 0 22 70 0 0 chr1 182055789 182055832 -60608521 + AT_rich Low_complexity Low_complexity 1 43 0 660 305 96 23 chr1 182057263 182057617 -60606736 + MLT1I LTR MaLR 1 380 -29 347 322 25 8 chr1 182057921 182058039 -60606314 + MLT1I LTR MaLR 205 324 -85 615 283 79 38 chr1 182059223 182059538 -60604815 + MLT1I LTR MaLR 80 407 -2 237 257 68 0 chr1 182059538 182059605 -60604748 - MLT1K LTR MaLR -35 553 482 28 48 0 0 chr1 182060222 182060264 -60604089 + AT_rich Low_complexity Low_complexity 1 42 0 1530 126 17 4 chr1 182062343 182062582 -60601771 + Charlie3 DNA MER1_type 2460 2701 -9 4251 34 10 2 chr1 182063969 182064492 -60599861 - L1PA4 LINE L1 0 6155 5629 21 0 0 0 chr1 182064520 182064541 -60599812 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 182065414 182065438 -60598915 + AT_rich Low_complexity Low_complexity 1 24 0 215 260 96 0 chr1 182065543 182065616 -60598737 + MIR SINE MIR 45 124 -84 1875 94 4 0 chr1 182065810 182066076 -60598277 + L1PA7 LINE L1 5875 6141 -13 9267 208 47 60 chr1 182066083 182066543 -60597810 + L1M1 LINE L1 2741 3206 -4359 1702 108 0 0 chr1 182066543 182066775 -60597578 + AluSg/x SINE Alu 71 302 -8 9267 208 47 60 chr1 182066775 182069854 -60594499 + L1M1 LINE L1 3206 6240 -1325 210 231 19 19 chr1 182070333 182070385 -60593968 - L2 LINE L2 -4 3268 3217 225 0 0 0 chr1 182070962 182070987 -60593366 + (TTA)n Simple_repeat Simple_repeat 3 27 0 19677 75 11 8 chr1 182070987 182074504 -60589849 - L1PA6 LINE L1 -18 6136 2605 12399 121 20 21 chr1 182074504 182076534 -60587819 - L1PA6 LINE L1 -3823 2323 296 236 174 0 0 chr1 182076514 182076560 -60587793 + L1PA6 LINE L1 254 299 -5847 * 443 255 3 91 chr1 182076601 182076899 -60587454 + L1M4 LINE L1 3154 3425 -2721 387 236 0 0 chr1 182077043 182077115 -60587238 + AluJ/FLAM SINE Alu 1 72 -230 2303 244 94 8 chr1 182077127 182077802 -60586551 + L1M4 LINE L1 3427 4175 -1971 459 0 0 0 chr1 182077802 182077853 -60586500 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2303 244 94 8 chr1 182077853 182077934 -60586419 + L1M4 LINE L1 4175 4248 -1898 1989 134 7 13 chr1 182077934 182078241 -60586112 + AluSx SINE Alu 1 305 -7 1128 215 21 84 chr1 182078283 182078618 -60585735 + L1MA9 LINE L1 5955 6274 -23 24 0 0 0 chr1 182078757 182078781 -60585572 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr1 182079400 182079435 -60584918 + AT_rich Low_complexity Low_complexity 1 35 0 210 191 0 0 chr1 182081069 182081111 -60583242 + (TA)n Simple_repeat Simple_repeat 2 43 0 2224 77 10 7 chr1 182081774 182082074 -60582279 - AluY SINE Alu -10 301 1 459 242 61 8 chr1 182082613 182082745 -60581608 - Charlie4 DNA MER1_type 0 1961 1823 26 30 0 0 chr1 182082928 182082961 -60581392 + AT_rich Low_complexity Low_complexity 1 33 0 246 300 50 30 chr1 182083358 182083458 -60580895 + L2 LINE L2 3205 3306 -7 1910 74 42 3 chr1 182083606 182083723 -60580630 + AluY SINE Alu 1 112 -199 207 0 0 0 chr1 182083723 182083746 -60580607 + (TA)n Simple_repeat Simple_repeat 2 24 0 1910 74 42 3 chr1 182083746 182083933 -60580420 + AluY SINE Alu 112 311 0 510 335 120 20 chr1 182085223 182085680 -60578673 + L1MC4a LINE L1 2509 3011 -3135 329 270 40 23 chr1 182086183 182086357 -60577996 + L1P LINE L1 3712 3888 -2258 723 154 0 24 chr1 182086454 182086577 -60577776 - FLAM_C SINE Alu -18 125 6 273 305 11 0 chr1 182086625 182086720 -60577633 + L1MC4a LINE L1 4023 4118 -2028 335 235 65 108 chr1 182086747 182087024 -60577329 + L1MC4a LINE L1 4163 4427 -1719 948 267 148 44 chr1 182087699 182088400 -60575953 + L1MC4a LINE L1 5255 6028 -1780 23 0 0 0 chr1 182088530 182088553 -60575800 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr1 182088899 182088930 -60575423 + AT_rich Low_complexity Low_complexity 1 31 0 365 313 91 10 chr1 182089458 182089666 -60574687 + MIR SINE MIR 38 262 0 293 300 181 6 chr1 182090568 182090728 -60573625 + MIR SINE MIR 65 252 -10 564 220 173 7 chr1 182093545 182093695 -60570658 - MER5A DNA MER1_type 0 189 15 216 162 0 0 chr1 182094151 182094188 -60570165 + GA-rich Low_complexity Low_complexity 2 38 0 207 0 0 0 chr1 182094743 182094766 -60569587 + (CA)n Simple_repeat Simple_repeat 2 24 0 255 61 0 0 chr1 182094817 182094850 -60569503 + (CA)n Simple_repeat Simple_repeat 2 34 0 300 27 0 0 chr1 182095276 182095313 -60569040 + (TA)n Simple_repeat Simple_repeat 1 37 0 24 85 0 0 chr1 182095645 182095704 -60568649 + AT_rich Low_complexity Low_complexity 1 59 0 21 71 0 0 chr1 182096127 182096169 -60568184 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 182097445 182097470 -60566883 + AT_rich Low_complexity Low_complexity 1 25 0 183 274 111 89 chr1 182097523 182097713 -60566640 - MIR SINE MIR -32 230 37 573 349 30 17 chr1 182098116 182098411 -60565942 - L2 LINE L2 -1 3312 3014 279 341 189 20 chr1 182098431 182098786 -60565567 - L2 LINE L2 -431 2883 2469 22 56 0 0 chr1 182100759 182100795 -60563558 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr1 182100967 182100995 -60563358 + AT_rich Low_complexity Low_complexity 1 28 0 189 211 42 84 chr1 182101431 182101502 -60562851 + MER5A DNA MER1_type 7 74 -115 * 491 221 257 0 chr1 182101440 182101580 -60562773 - MER5A DNA MER1_type -4 185 10 41 36 0 0 chr1 182101816 182101871 -60562482 + AT_rich Low_complexity Low_complexity 1 55 0 21 95 0 0 chr1 182103000 182103063 -60561290 + AT_rich Low_complexity Low_complexity 1 63 0 260 320 55 8 chr1 182103403 182103531 -60560822 + MLT1I LTR MaLR 2 135 -274 525 113 0 0 chr1 182103679 182103759 -60560594 + AluSg/x SINE Alu 174 253 -57 2052 114 3 26 chr1 182105124 182105431 -60558922 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr1 182106457 182106479 -60557874 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr1 182106908 182106937 -60557416 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr1 182106961 182107003 -60557350 + AT_rich Low_complexity Low_complexity 1 42 0 249 146 0 0 chr1 182109066 182109114 -60555239 + (TG)n Simple_repeat Simple_repeat 1 48 0 4351 169 42 29 chr1 182109482 182110455 -60553898 + L1MA8 LINE L1 5105 6119 -172 23 0 0 0 chr1 182110527 182110550 -60553803 + AT_rich Low_complexity Low_complexity 1 23 0 1379 197 27 20 chr1 182110555 182110849 -60553504 + AluJo SINE Alu 3 298 -14 4732 235 33 15 chr1 182110866 182112420 -60551933 - L1 LINE L1 -2632 4933 3342 1615 187 28 3 chr1 182112443 182112732 -60551621 - AluJb SINE Alu -16 296 1 2067 284 63 84 chr1 182112732 182114203 -60550150 - L1 LINE L1 -5359 2206 16 496 185 13 89 chr1 182114202 182114218 -60550135 - L1 LINE L1 -1003 5143 5127 * 186 43 0 0 chr1 182114218 182114241 -60550112 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 496 185 13 89 chr1 182114241 182114381 -60549972 - L1 LINE L1 -1019 5127 4999 5411 206 46 7 chr1 182114425 182115634 -60548719 + L1 LINE L1 3813 5068 -1078 1002 252 30 18 chr1 182115630 182115959 -60548394 - L1 LINE L1 -2064 4082 3750 * 345 82 0 0 chr1 182115960 182116009 -60548344 + (TG)n Simple_repeat Simple_repeat 1 49 0 5927 218 61 38 chr1 182116021 182117613 -60546740 - L1P LINE L1 -2475 3671 2001 2140 12 0 0 chr1 182117613 182117860 -60546493 - L1PA3 LINE L1 0 6155 5909 5927 218 61 38 chr1 182117860 182118635 -60545718 - L1P LINE L1 -4145 2001 1246 3824 55 218 12 chr1 182118634 182119221 -60545132 + L1P LINE L1 543 1250 -4896 * 1037 213 146 3 chr1 182119221 182119308 -60545045 - L1MDa LINE L1 -4102 2438 2365 843 122 0 0 chr1 182119308 182119439 -60544914 + (TA)n Simple_repeat Simple_repeat 2 132 0 1037 213 146 3 chr1 182119439 182119722 -60544631 - L1MDa LINE L1 -4175 2365 2015 851 253 25 0 chr1 182120164 182120405 -60543948 - L1MC1 LINE L1 0 6333 6087 326 100 17 0 chr1 182120411 182120471 -60543882 + (TA)n Simple_repeat Simple_repeat 1 61 0 29 70 0 0 chr1 182120587 182120644 -60543709 + AT_rich Low_complexity Low_complexity 1 57 0 187 292 80 35 chr1 182120887 182121000 -60543353 + L3 LINE CR1 1296 1413 -164 23 78 0 0 chr1 182122073 182122124 -60542229 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr1 182122196 182122227 -60542126 + AT_rich Low_complexity Low_complexity 1 31 0 236 351 21 21 chr1 182122262 182122356 -60541997 + MIR3 SINE MIR 63 156 -52 4975 165 37 38 chr1 182122537 182124115 -60540238 + L1MA6 LINE L1 4716 6296 -4 28 48 0 0 chr1 182124621 182124663 -60539690 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr1 182125368 182125401 -60538952 + AT_rich Low_complexity Low_complexity 1 33 0 1219 137 0 0 chr1 182125438 182125613 -60538740 - AluSg/x SINE Alu -6 306 132 451 106 0 0 chr1 182126536 182126602 -60537751 - L1PA3 LINE L1 -257 5898 5833 1841 43 4 0 chr1 182126602 182126831 -60537522 + L1PA3 LINE L1 5925 6155 0 2775 195 30 29 chr1 182127023 182127649 -60536704 + L1MB3 LINE L1 5550 6176 -7 23 33 0 0 chr1 182128069 182128099 -60536254 + AT_rich Low_complexity Low_complexity 1 30 0 202 436 31 13 chr1 182129365 182129590 -60534763 - L2 LINE L2 -189 3083 2855 393 22 0 0 chr1 182130209 182130255 -60534098 + (TA)n Simple_repeat Simple_repeat 2 47 0 21 57 0 0 chr1 182130274 182130309 -60534044 + AT_rich Low_complexity Low_complexity 1 35 0 620 292 54 3 chr1 182131778 182132017 -60532336 - MIR SINE MIR 0 262 12 205 225 0 0 chr1 182132421 182132461 -60531892 - L2 LINE L2 -202 3070 3031 1679 243 42 15 chr1 182132470 182132957 -60531396 + MLT1D LTR MaLR 4 398 -11 513 284 102 57 chr1 182134009 182134431 -60529922 + MLT1J1 LTR MaLR 6 446 0 702 262 6 6 chr1 182134436 182134604 -60529749 - MIR SINE MIR -87 175 8 2051 133 3 0 chr1 182135066 182135368 -60528985 + AluSx SINE Alu 1 303 -9 188 358 148 12 chr1 182135539 182135782 -60528571 + L2 LINE L2 1381 1656 -1658 2265 140 51 17 chr1 182137617 182138031 -60526322 - MSTA LTR MaLR 0 428 1 4188 167 33 55 chr1 182138211 182138698 -60525655 - MER6 DNA MER2_type -2 863 402 186 43 0 0 chr1 182138698 182138721 -60525632 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 4188 167 33 55 chr1 182138721 182139084 -60525269 - MER6 DNA MER2_type -463 402 32 221 222 16 0 chr1 182139112 182139175 -60525178 + (TA)n Simple_repeat Simple_repeat 1 64 0 255 256 11 11 chr1 182140166 182140256 -60524097 + (TA)n Simple_repeat Simple_repeat 2 91 0 25 31 0 0 chr1 182140925 182140957 -60523396 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 182141425 182141448 -60522905 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr1 182142853 182142884 -60521469 + AT_rich Low_complexity Low_complexity 1 31 0 10360 211 45 33 chr1 182144135 182145207 -60519146 + L1PA16 LINE L1 1860 2918 -3951 2017 136 3 19 chr1 182145207 182145524 -60518829 + AluSx SINE Alu 1 312 0 10360 211 45 33 chr1 182145524 182149272 -60515081 + L1PA16 LINE L1 2918 6852 -17 25 0 0 0 chr1 182149391 182149416 -60514937 + AT_rich Low_complexity Low_complexity 1 25 0 345 243 43 3 chr1 182149723 182149832 -60514521 + MLT1J1 LTR MaLR 85 196 -254 21 36 0 0 chr1 182150261 182150289 -60514064 + AT_rich Low_complexity Low_complexity 1 28 0 391 330 67 59 chr1 182151354 182151593 -60512760 - MIR SINE MIR -7 255 15 686 319 104 13 chr1 182151927 182152244 -60512109 - L3 LINE CR1 -19 1558 1213 25 51 0 0 chr1 182152371 182152410 -60511943 + AT_rich Low_complexity Low_complexity 1 39 0 812 103 0 8 chr1 182155059 182155185 -60509168 + (TTCC)n Simple_repeat Simple_repeat 2 126 0 2071 161 15 15 chr1 182155580 182156025 -60508328 + MLT2A2 LTR ERVL 1 369 -84 198 0 0 0 chr1 182156171 182156193 -60508160 + (CA)n Simple_repeat Simple_repeat 1 22 0 2070 142 0 6 chr1 182158002 182158313 -60506040 - AluSx SINE Alu -3 309 1 647 311 71 19 chr1 182158330 182158754 -60505599 + L1MEc LINE L1 908 1257 -4862 1145 64 7 0 chr1 182158757 182158897 -60505456 + AluSp SINE Alu 3 143 -170 861 308 4 4 chr1 182159116 182159353 -60505000 + MIR SINE MIR 20 256 -6 225 94 0 0 chr1 182159536 182159568 -60504785 + (TTA)n Simple_repeat Simple_repeat 2 33 0 573 226 0 0 chr1 182159568 182159683 -60504670 - FLAM_C SINE Alu -23 120 6 249 296 91 0 chr1 182160046 182160134 -60504219 + L3 LINE CR1 623 718 -859 324 244 75 44 chr1 182160264 182160424 -60503929 - L1MDa LINE L1 -4037 2503 2339 22 80 0 0 chr1 182160444 182160494 -60503859 + AT_rich Low_complexity Low_complexity 1 50 0 436 62 77 0 chr1 182161802 182161867 -60502486 + MADE1 DNA Mariner 1 70 -10 25 0 0 0 chr1 182161920 182161945 -60502408 + AT_rich Low_complexity Low_complexity 1 25 0 215 204 0 0 chr1 182162358 182162402 -60501951 + (CA)n Simple_repeat Simple_repeat 2 45 0 198 0 0 0 chr1 182164907 182164929 -60499424 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr1 182165356 182165385 -60498968 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr1 182165409 182165451 -60498902 + AT_rich Low_complexity Low_complexity 1 42 0 1123 73 6 6 chr1 182167428 182167615 -60496738 + AluY SINE Alu 130 311 0 877 191 13 30 chr1 182169221 182169448 -60494905 + MLT2A2 LTR ERVL 298 453 0 213 39 0 0 chr1 182169487 182169513 -60494840 + (TTG)n Simple_repeat Simple_repeat 2 27 0 423 0 0 0 chr1 182170627 182170674 -60493679 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 219 356 23 11 chr1 182172544 182172631 -60491722 - L2 LINE L2 -44 3269 3182 1331 220 53 76 chr1 182173457 182173970 -60490383 - MLT1D LTR MaLR 0 505 5 482 332 39 10 chr1 182175001 182175206 -60489147 + MIR SINE MIR 37 247 -15 210 259 0 0 chr1 182175206 182175264 -60489089 + (TTA)n Simple_repeat Simple_repeat 3 60 0 526 292 96 12 chr1 182175810 182176050 -60488303 - MIR SINE MIR -1 261 2 23 0 0 0 chr1 182176922 182176945 -60487408 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr1 182177556 182177603 -60486750 + AT_rich Low_complexity Low_complexity 1 47 0 2101 108 0 3 chr1 182178876 182179164 -60485189 - AluSc SINE Alu -22 287 1 1802 132 68 0 chr1 182182547 182182827 -60481526 - AluSp SINE Alu -14 299 1 272 390 19 0 chr1 182184022 182184181 -60480172 + MER20B DNA MER1_type 17 178 -605 207 0 0 0 chr1 182184563 182184586 -60479767 + (TC)n Simple_repeat Simple_repeat 2 24 0 623 228 70 6 chr1 182185965 182186136 -60478217 + MER20 DNA MER1_type 38 219 0 219 364 0 0 chr1 182186168 182186234 -60478119 + L2 LINE L2 3204 3269 -3 291 339 114 33 chr1 182186395 182186728 -60477625 + L2 LINE L2 2498 2857 -457 1893 255 48 17 chr1 182186742 182187435 -60476918 + MER99 DNA DNA 31 827 -1 191 390 0 57 chr1 182187488 182187611 -60476742 + L2 LINE L2 2929 3044 -269 353 131 16 0 chr1 182188186 182188247 -60476106 - MLT1D LTR MaLR -1 504 443 1052 242 30 15 chr1 182188270 182188534 -60475819 - MLT1D LTR MaLR -237 268 1 1897 35 0 0 chr1 182189291 182189519 -60474834 - L1PA5 LINE L1 -1390 4756 4529 7133 53 1 1 chr1 182189520 182190899 -60473454 + L1PA5 LINE L1 4776 6154 0 365 305 94 62 chr1 182191046 182191205 -60473148 + MER77 LTR ERV1 138 290 -315 592 225 8 0 chr1 182191205 182191325 -60473028 + FLAM_A SINE Alu 1 121 -12 246 62 0 0 chr1 182191327 182191359 -60472994 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 365 305 94 62 chr1 182191359 182191584 -60472769 + MER77 LTR ERV1 290 586 -19 450 274 16 8 chr1 182191986 182192110 -60472243 + MER94 DNA DNA 1 125 -9 2157 123 0 3 chr1 182193116 182193426 -60470927 - AluSc SINE Alu 0 309 1 1240 262 3 67 chr1 182193588 182193977 -60470376 + MLT1A2 LTR MaLR 11 374 0 229 103 0 0 chr1 182194252 182194281 -60470072 + MLT1E3 LTR MaLR 1 29 -595 1883 168 39 36 chr1 182194281 182194644 -60469709 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr1 182194649 182194674 -60469679 + AT_rich Low_complexity Low_complexity 1 25 0 956 247 157 66 chr1 182194724 182195165 -60469188 + MLT1E3 LTR MaLR 174 624 0 408 337 71 50 chr1 182195248 182195711 -60468642 - L2 LINE L2 -525 2789 2317 31 26 0 0 chr1 182196327 182196365 -60467988 + AT_rich Low_complexity Low_complexity 1 38 0 318 294 59 65 chr1 182197056 182197226 -60467127 - L2 LINE L2 -7 3306 3138 255 174 17 52 chr1 182197228 182197343 -60467010 + (TTATA)n Simple_repeat Simple_repeat 3 113 0 209 108 54 54 chr1 182197351 182197444 -60466909 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 24 67 0 0 chr1 182197450 182197495 -60466858 + AT_rich Low_complexity Low_complexity 1 45 0 410 94 16 0 chr1 182197527 182197591 -60466762 + (TA)n Simple_repeat Simple_repeat 1 65 0 2567 113 14 0 chr1 182197860 182198230 -60466123 - THE1C LTR MaLR 0 375 1 8705 133 48 46 chr1 182198230 182199807 -60464546 - THE1C-int LTR MaLR 0 1580 1 2520 137 0 13 chr1 182199807 182200110 -60464243 - THE1C LTR MaLR 0 375 76 4704 94 15 3 chr1 182200110 182200762 -60463591 + PABL_A LTR ERV1 1 660 0 2520 137 0 13 chr1 182200762 182200838 -60463515 - THE1C LTR MaLR -299 76 1 26 64 0 0 chr1 182201556 182201603 -60462750 + AT_rich Low_complexity Low_complexity 1 47 0 364 283 122 40 chr1 182201926 182202173 -60462180 + L1 LINE L1 3199 3465 -2681 3888 202 15 40 chr1 182202500 182203540 -60460813 - L1M2 LINE L1 -749 5397 4518 1910 115 0 0 chr1 182204873 182205134 -60459219 + AluSx SINE Alu 38 298 -14 234 0 0 0 chr1 182205161 182205187 -60459166 + (TG)n Simple_repeat Simple_repeat 1 26 0 285 182 0 0 chr1 182205187 182205242 -60459111 + L1MC4 LINE L1 6649 6703 -1339 654 284 5 55 chr1 182205255 182205473 -60458880 - MER82 DNA MER2_type -6 647 441 434 99 0 121 chr1 182205501 182205592 -60458761 - MADE1 DNA Mariner 0 80 1 394 311 51 17 chr1 182205695 182205872 -60458481 + MIR SINE MIR 31 213 -49 318 211 132 0 chr1 182205899 182205975 -60458378 - MER82 DNA MER2_type -567 86 1 243 152 0 0 chr1 182206006 182206052 -60458301 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 347 368 31 3 chr1 182206080 182206441 -60457912 + L1 LINE L1 4040 4410 -1736 241 240 40 0 chr1 182206946 182207021 -60457332 - L1MC4 LINE L1 -1351 6691 6614 226 244 56 11 chr1 182207259 182207349 -60457004 + L1M LINE L1 5254 5347 -2461 233 181 56 83 chr1 182208246 182208318 -60456035 - MIR SINE MIR -74 188 119 281 242 0 109 chr1 182208702 182208830 -60455523 + Charlie5 DNA MER1_type 9 122 -2490 1976 234 56 62 chr1 182209075 182209348 -60455005 + L1 LINE L1 4014 4287 -1859 237 108 0 0 chr1 182209348 182209385 -60454968 + (CA)n Simple_repeat Simple_repeat 2 38 0 1976 234 56 62 chr1 182209385 182209867 -60454486 + L1 LINE L1 4287 4764 -1382 405 260 32 91 chr1 182209896 182210115 -60454238 + MLT1L LTR MaLR 179 384 -231 1351 264 18 18 chr1 182210475 182210809 -60453544 + LTR40a LTR ERVL 186 519 0 202 364 106 36 chr1 182210963 182211405 -60452948 - L2 LINE L2 0 3313 2841 2288 100 3 3 chr1 182211444 182211754 -60452599 + AluSg SINE Alu 1 310 0 670 362 125 18 chr1 182211788 182212355 -60451998 - L2 LINE L2 -591 2723 2096 238 382 55 0 chr1 182212495 182212605 -60451748 - MIR SINE MIR -101 161 46 244 368 35 21 chr1 182212655 182212800 -60451553 - MIR SINE MIR -67 141 47 294 29 0 0 chr1 182212996 182213031 -60451322 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 801 261 37 18 chr1 182215577 182215795 -60448558 - MIR SINE MIR 0 262 41 21 57 0 0 chr1 182215816 182215851 -60448502 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 182216282 182216306 -60448047 + AT_rich Low_complexity Low_complexity 1 24 0 304 388 31 12 chr1 182216306 182216466 -60447887 - MIR SINE MIR -21 241 79 3271 78 2 0 chr1 182216610 182217058 -60447295 + L1P LINE L1 4811 5259 -887 7746 19 1 0 chr1 182217204 182218389 -60445964 + L1PA3 LINE L1 4980 6155 0 27 49 0 0 chr1 182218394 182218435 -60445918 + AT_rich Low_complexity Low_complexity 1 41 0 40 87 0 0 chr1 182218557 182218660 -60445693 + AT_rich Low_complexity Low_complexity 1 103 0 457 316 47 42 chr1 182218748 182218963 -60445390 + MIR SINE MIR 2 217 -45 1292 318 61 12 chr1 182219178 182219748 -60444605 + L3 LINE CR1 613 1210 -367 1031 314 39 3 chr1 182219755 182220092 -60444261 + L2 LINE L2 2015 2363 -951 24 0 0 0 chr1 182220162 182220186 -60444167 + AT_rich Low_complexity Low_complexity 1 24 0 189 371 34 34 chr1 182220217 182220306 -60444047 + L3 LINE CR1 1431 1519 -58 239 173 77 0 chr1 182220428 182220480 -60443873 - L2 LINE L2 -10 3303 3248 1364 244 58 13 chr1 182220495 182220892 -60443461 + MLT1C LTR MaLR 53 467 0 727 287 79 63 chr1 182221899 182222293 -60442060 - L2 LINE L2 -1381 1933 1534 1291 278 176 52 chr1 182222354 182223206 -60441147 - L2 LINE L2 -2342 972 15 443 281 39 46 chr1 182224490 182224643 -60439710 - MIR SINE MIR -71 191 40 282 256 35 0 chr1 182225294 182225380 -60438973 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 30 45 0 0 chr1 182226877 182226921 -60437432 + AT_rich Low_complexity Low_complexity 1 44 0 384 59 0 0 chr1 182228106 182228157 -60436196 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 447 314 58 24 chr1 182228169 182228376 -60435977 - MIR SINE MIR -14 248 35 240 35 0 0 chr1 182228854 182228883 -60435470 + (TA)n Simple_repeat Simple_repeat 1 29 0 35 0 0 0 chr1 182229883 182229918 -60434435 + AT_rich Low_complexity Low_complexity 1 35 0 256 328 107 15 chr1 182230797 182230928 -60433425 - MIR SINE MIR -4 258 116 250 297 34 80 chr1 182232801 182232976 -60431377 + MLT1L LTR MaLR 34 200 -415 1869 125 0 48 chr1 182233225 182233538 -60430815 + AluSx SINE Alu 12 309 -3 453 315 43 16 chr1 182233633 182233817 -60430536 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr1 182233945 182233966 -60430387 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 182234380 182234402 -60429951 + AT_rich Low_complexity Low_complexity 1 22 0 1511 176 22 0 chr1 182234845 182235157 -60429196 - AluJb SINE Alu 0 328 11 193 276 211 32 chr1 182236108 182236231 -60428122 - MIR SINE MIR -13 249 105 24 32 0 0 chr1 182236477 182236508 -60427845 + AT_rich Low_complexity Low_complexity 1 31 0 386 227 29 87 chr1 182236736 182236908 -60427445 - MIR SINE MIR -25 237 76 2629 42 0 0 chr1 182237309 182237620 -60426733 + AluY SINE Alu 1 311 0 23 33 0 0 chr1 182238919 182238949 -60425404 + AT_rich Low_complexity Low_complexity 1 30 0 2402 50 37 0 chr1 182240147 182240324 -60424029 - AluY SINE Alu -2 309 115 204 67 0 0 chr1 182240324 182240354 -60423999 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2402 50 37 0 chr1 182240354 182240474 -60423879 - AluY SINE Alu -196 115 1 274 367 11 0 chr1 182240574 182240664 -60423689 + MIR3 SINE MIR 97 187 -21 259 280 67 0 chr1 182240827 182240902 -60423451 + MER20 DNA MER1_type 4 83 -136 764 198 42 62 chr1 182241052 182241244 -60423109 + MER20 DNA MER1_type 31 218 -1 819 148 0 0 chr1 182241250 182241372 -60422981 + FLAM_C SINE Alu 1 122 -21 211 236 11 11 chr1 182242113 182242202 -60422151 + CT-rich Low_complexity Low_complexity 2 90 0 601 338 116 58 chr1 182242267 182242991 -60421362 - L2 LINE L2 -708 2606 1841 903 275 94 29 chr1 182242994 182243546 -60420807 + L1M4 LINE L1 4525 5112 -1034 187 254 73 0 chr1 182243650 182243705 -60420648 + MER5C DNA MER1_type 94 152 -172 324 226 51 113 chr1 182243791 182243986 -60420367 + HAL1 LINE L1 37 219 -2288 248 0 31 0 chr1 182244515 182244547 -60419806 + (TA)n Simple_repeat Simple_repeat 2 34 0 2437 8 0 0 chr1 182244573 182244878 -60419475 - AluYa5 SINE Alu 0 320 16 217 224 0 20 chr1 182245028 182245077 -60419276 + GA-rich Low_complexity Low_complexity 3 50 0 21 0 0 0 chr1 182245131 182245152 -60419201 + AT_rich Low_complexity Low_complexity 1 21 0 291 214 0 0 chr1 182245288 182245358 -60418995 + (TG)n Simple_repeat Simple_repeat 2 71 0 861 263 59 55 chr1 182245481 182245928 -60418425 + MLT1D LTR MaLR 14 505 0 21 0 0 0 chr1 182246075 182246096 -60418257 + AT_rich Low_complexity Low_complexity 1 21 0 527 213 0 16 chr1 182246096 182246218 -60418135 - FRAM SINE Alu -14 162 43 25 31 0 0 chr1 182246416 182246448 -60417905 + AT_rich Low_complexity Low_complexity 1 32 0 342 352 47 21 chr1 182246485 182246678 -60417675 - MLT1J LTR MaLR -2 509 312 1106 235 25 35 chr1 182247753 182248038 -60416315 + AluJo SINE Alu 1 282 -30 194 315 79 11 chr1 182248523 182248612 -60415741 + L2 LINE L2 3201 3295 -18 249 314 118 24 chr1 182248772 182248941 -60415412 - MIR SINE MIR 0 262 78 884 158 20 0 chr1 182250328 182250480 -60413873 - AluJb SINE Alu -157 155 1 234 0 0 0 chr1 182251822 182251848 -60412505 + (CA)n Simple_repeat Simple_repeat 2 27 0 329 0 24 0 chr1 182253421 182253462 -60410891 + (TTA)n Simple_repeat Simple_repeat 2 43 0 286 245 32 53 chr1 182253810 182253904 -60410449 + MIR SINE MIR 49 140 -122 400 326 49 38 chr1 182254180 182254364 -60409989 + MIR SINE MIR 40 225 -37 24 32 0 0 chr1 182255568 182255599 -60408754 + AT_rich Low_complexity Low_complexity 1 31 0 593 184 46 0 chr1 182258360 182258469 -60405884 - MER2 DNA MER2_type -231 114 1 1154 191 21 17 chr1 182258509 182258744 -60405609 - MER46A DNA MER2_type 0 236 1 28 0 0 0 chr1 182258892 182258920 -60405433 + AT_rich Low_complexity Low_complexity 1 28 0 201 248 166 48 chr1 182258978 182259123 -60405230 + MIR SINE MIR 92 253 -9 1889 144 0 12 chr1 182259867 182260186 -60404167 - L1PA13 LINE L1 -1 6162 5848 434 76 15 15 chr1 182260384 182260450 -60403903 + MLT1D LTR MaLR 437 502 -3 870 152 0 0 chr1 182260793 182260944 -60403409 + L1MA5 LINE L1 6144 6294 -6 193 381 0 0 chr1 182261145 182261208 -60403145 - MIR SINE MIR -16 246 184 305 298 120 6 chr1 182261373 182261531 -60402822 + L1MC/D LINE L1 5668 5843 -1965 1894 145 13 16 chr1 182261716 182262026 -60402327 - AluSx SINE Alu -3 309 1 22 0 0 0 chr1 182263281 182263303 -60401050 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr1 182263465 182263501 -60400852 + AT_rich Low_complexity Low_complexity 1 36 0 1753 144 7 0 chr1 182263507 182263778 -60400575 - AluSx SINE Alu -26 286 14 29 28 0 0 chr1 182263786 182263822 -60400531 + AT_rich Low_complexity Low_complexity 1 36 0 323 321 62 40 chr1 182265271 182265545 -60398808 + L2 LINE L2 2577 2856 -458 299 299 47 87 chr1 182265593 182265847 -60398506 + L2 LINE L2 2944 3187 -126 1638 153 44 11 chr1 182266233 182266543 -60397810 - AluSx SINE Alu 0 319 1 559 223 21 47 chr1 182266599 182266792 -60397561 - Charlie1 DNA MER1_type -14 2747 2560 261 135 0 39 chr1 182266780 182266832 -60397521 - Charlie1 DNA MER1_type -2655 106 57 * 392 239 62 91 chr1 182267496 182267705 -60396648 + MER31-int LTR ERV1 3330 3532 -1404 996 214 127 30 chr1 182267962 182268331 -60396022 + LTR37A LTR ERV1 22 426 0 219 382 0 0 chr1 182268975 182269043 -60395310 - L2 LINE L2 -19 3253 3186 187 330 104 28 chr1 182269323 182269429 -60394924 + MIR SINE MIR 39 152 -56 408 158 248 0 chr1 182269446 182269547 -60394806 + MER110A LTR ERV1 20 145 -323 560 251 27 49 chr1 182269551 182269774 -60394579 + MER110A LTR ERV1 251 468 0 36 100 0 0 chr1 182270369 182270489 -60393864 + AT_rich Low_complexity Low_complexity 1 120 0 29 28 0 0 chr1 182271440 182271476 -60392877 + AT_rich Low_complexity Low_complexity 1 36 0 180 310 81 11 chr1 182272665 182272752 -60391601 - MIR3 SINE MIR -10 198 106 732 305 82 19 chr1 182273301 182273619 -60390734 - MER46C DNA MER2_type 0 338 1 193 319 14 0 chr1 182273690 182273759 -60390594 + L3 LINE CR1 632 701 -876 299 347 0 54 chr1 182274009 182274176 -60390177 + L3 LINE CR1 1419 1576 -1 206 280 21 11 chr1 182274787 182274880 -60389473 + (TG)n Simple_repeat Simple_repeat 2 95 0 276 30 0 0 chr1 182274926 182274959 -60389394 + (TG)n Simple_repeat Simple_repeat 2 34 0 1860 128 48 3 chr1 182275036 182275325 -60389028 - AluSq SINE Alu -8 305 4 1507 75 10 0 chr1 182275362 182275561 -60388792 + AluY SINE Alu 110 310 -1 2030 183 37 28 chr1 182275631 182276068 -60388285 + MER101B LTR ERV1 3 443 -127 2029 116 3 22 chr1 182276078 182276397 -60387956 + AluSp SINE Alu 1 313 0 389 165 89 0 chr1 182276543 182276622 -60387731 + MER101 LTR ERV1 389 474 0 1781 134 3 7 chr1 182276752 182277035 -60387318 - AluSg SINE Alu -28 282 1 308 148 16 0 chr1 182277736 182277797 -60386556 + (CA)n Simple_repeat Simple_repeat 2 63 0 22 70 0 0 chr1 182278172 182278215 -60386138 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr1 182278369 182278397 -60385956 + AT_rich Low_complexity Low_complexity 1 28 0 387 329 44 0 chr1 182278869 182279027 -60385326 - MIR3 SINE MIR -13 195 31 203 216 0 54 chr1 182279128 182279202 -60385151 + A-rich Low_complexity Low_complexity 3 72 0 23 54 0 0 chr1 182279492 182279529 -60384824 + AT_rich Low_complexity Low_complexity 1 37 0 208 200 22 0 chr1 182279699 182279773 -60384580 + (TA)n Simple_repeat Simple_repeat 1 75 0 210 128 0 0 chr1 182279783 182279822 -60384531 + (TC)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr1 182279901 182279927 -60384426 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr1 182280457 182280503 -60383850 + AT_rich Low_complexity Low_complexity 1 46 0 306 0 0 0 chr1 182280662 182280696 -60383657 + (TG)n Simple_repeat Simple_repeat 1 34 0 208 105 53 0 chr1 182281763 182281801 -60382552 + (TA)n Simple_repeat Simple_repeat 2 41 0 362 192 15 108 chr1 182282141 182282271 -60382082 + MER53 DNA DNA 1 118 -71 427 321 30 4 chr1 182282870 182283107 -60381246 - L1M4 LINE L1 -1070 5076 4834 23 0 0 0 chr1 182283144 182283167 -60381186 + AT_rich Low_complexity Low_complexity 1 23 0 1945 130 10 3 chr1 182284780 182285079 -60379274 + AluSx SINE Alu 1 301 -11 412 287 44 14 chr1 182285567 182285860 -60378493 + AluSq SINE Alu 1 302 -11 2391 62 7 3 chr1 182286205 182286513 -60377840 - AluSc SINE Alu 0 309 1 21 0 0 0 chr1 182286770 182286791 -60377562 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr1 182288304 182288353 -60376000 + AT_rich Low_complexity Low_complexity 1 49 0 230 206 15 0 chr1 182288431 182288499 -60375854 + (TA)n Simple_repeat Simple_repeat 2 70 0 201 241 17 0 chr1 182288500 182288558 -60375795 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr1 182289555 182289578 -60374775 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr1 182289746 182289792 -60374561 + AT_rich Low_complexity Low_complexity 1 46 0 739 245 62 79 chr1 182290089 182290156 -60374197 + MIR SINE MIR 1 68 -194 1929 156 0 6 chr1 182290156 182290470 -60373883 + AluSx SINE Alu 1 312 0 739 245 62 79 chr1 182290470 182290643 -60373710 + MIR SINE MIR 68 237 -25 206 242 32 48 chr1 182290765 182290827 -60373526 + L3b LINE CR1 1512 1572 -11 284 140 237 21 chr1 182290934 182291027 -60373326 - L1MA9 LINE L1 -38 6274 6162 198 171 0 0 chr1 182292922 182292963 -60371390 + CT-rich Low_complexity Low_complexity 1 41 0 41 58 0 0 chr1 182293204 182293273 -60371080 + AT_rich Low_complexity Low_complexity 1 69 0 33 66 0 0 chr1 182293306 182293367 -60370986 + AT_rich Low_complexity Low_complexity 1 61 0 450 320 119 45 chr1 182293721 182294183 -60370170 + L2 LINE L2 2349 2844 -470 1840 141 42 0 chr1 182294923 182295207 -60369146 - AluSx SINE Alu -16 296 1 21 57 0 0 chr1 182297577 182297612 -60366741 + AT_rich Low_complexity Low_complexity 1 35 0 1886 183 50 42 chr1 182298330 182298811 -60365542 + MER31A LTR ERV1 1 485 0 302 275 30 61 chr1 182299698 182299829 -60364524 + L2 LINE L2 3187 3313 0 29 0 0 0 chr1 182299878 182299907 -60364446 + AT_rich Low_complexity Low_complexity 1 29 0 197 312 130 0 chr1 182300256 182300333 -60364020 + L2 LINE L2 3193 3279 -34 21 71 0 0 chr1 182301075 182301117 -60363236 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 182305454 182305475 -60358878 + AT_rich Low_complexity Low_complexity 1 21 0 266 352 56 0 chr1 182306430 182306555 -60357798 - MIR SINE MIR -87 175 44 234 0 0 0 chr1 182307070 182307096 -60357257 + (CA)n Simple_repeat Simple_repeat 2 27 0 208 250 0 0 chr1 182307396 182307440 -60356913 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 201 74 0 0 chr1 182307790 182307817 -60356536 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr1 182309540 182309561 -60354792 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr1 182310085 182310112 -60354241 + (T)n Simple_repeat Simple_repeat 1 27 0 426 39 0 0 chr1 182312965 182313017 -60351336 + (TC)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr1 182314206 182314231 -60350122 + AT_rich Low_complexity Low_complexity 1 25 0 180 111 0 0 chr1 182315374 182315401 -60348952 + (T)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr1 182315625 182315660 -60348693 + AT_rich Low_complexity Low_complexity 1 35 0 378 337 48 37 chr1 182315809 182315996 -60348357 - MIR3 SINE MIR -11 197 9 2024 102 14 14 chr1 182316247 182316532 -60347821 + AluSc SINE Alu 7 291 -18 309 51 0 0 chr1 182316532 182316571 -60347782 + (TA)n Simple_repeat Simple_repeat 2 40 0 1025 144 0 6 chr1 182316582 182316762 -60347591 + (TA)n Simple_repeat Simple_repeat 2 180 0 2092 131 0 0 chr1 182317536 182317834 -60346519 + AluSx SINE Alu 1 298 -14 324 242 8 105 chr1 182317902 182318026 -60346327 + L2 LINE L2 3201 3312 -1 1158 234 62 81 chr1 182318347 182318719 -60345634 - MLT1A2 LTR MaLR 0 374 10 1707 196 136 16 chr1 182319243 182319693 -60344660 + MLT1D LTR MaLR 1 504 -1 1550 214 3 3 chr1 182319837 182320127 -60344226 + AluJb SINE Alu 1 290 -22 182 138 0 0 chr1 182320948 182320977 -60343376 - L2 LINE L2 -8 3305 3277 230 310 80 0 chr1 182321328 182321428 -60342925 + MER102a DNA MER1_type 214 321 -9 1509 191 43 16 chr1 182321571 182321875 -60342478 + AluJb SINE Alu 1 312 0 615 245 55 0 chr1 182322048 182322165 -60342188 - MLT1J2 LTR MaLR -243 207 77 432 55 0 0 chr1 182322165 182322220 -60342133 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 615 245 55 0 chr1 182322220 182322265 -60342088 - MLT1J2 LTR MaLR -373 77 36 249 313 16 0 chr1 182322479 182322543 -60341810 + L2 LINE L2 3249 3313 0 2836 205 52 28 chr1 182322596 182323682 -60340671 + L1MC2 LINE L1 4923 6029 -315 2154 319 55 22 chr1 182323694 182324636 -60339717 + L2 LINE L2 1921 2893 -421 27 0 0 0 chr1 182325610 182325637 -60338716 + AT_rich Low_complexity Low_complexity 1 27 0 39 74 0 0 chr1 182326244 182326325 -60338028 + AT_rich Low_complexity Low_complexity 1 81 0 26 50 0 0 chr1 182326832 182326872 -60337481 + AT_rich Low_complexity Low_complexity 1 40 0 1371 214 39 47 chr1 182327309 182327668 -60336685 - MLT1A2 LTR MaLR 0 374 19 25 65 0 0 chr1 182327940 182327986 -60336367 + AT_rich Low_complexity Low_complexity 1 46 0 624 353 124 40 chr1 182328586 182329294 -60335059 + L2 LINE L2 2208 2975 -339 220 212 15 30 chr1 182330044 182330110 -60334243 + (TA)n Simple_repeat Simple_repeat 1 65 0 1156 255 111 13 chr1 182330134 182330790 -60333563 - L1M4 LINE L1 -1714 4432 3706 29 28 0 0 chr1 182331583 182331619 -60332734 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr1 182331644 182331682 -60332671 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 182332978 182332999 -60331354 + AT_rich Low_complexity Low_complexity 1 21 0 254 344 20 15 chr1 182333026 182333154 -60331199 + MIR SINE MIR 2 125 -83 183 42 0 0 chr1 182333990 182334014 -60330339 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2982 151 25 25 chr1 182334130 182334655 -60329698 + MER1A DNA MER1_type 3 527 0 208 275 9 9 chr1 182334704 182334787 -60329566 + GA-rich Low_complexity Low_complexity 2 87 -23 204 40 0 0 chr1 182334787 182334812 -60329541 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 275 9 9 chr1 182334812 182334837 -60329516 + GA-rich Low_complexity Low_complexity 86 110 0 22 0 0 0 chr1 182334977 182334999 -60329354 + AT_rich Low_complexity Low_complexity 1 22 0 294 282 41 41 chr1 182335334 182335529 -60328824 + L1M4 LINE L1 2202 2396 -3750 1729 200 70 27 chr1 182335567 182336012 -60328341 - MER31B LTR ERV1 0 466 3 30 69 0 0 chr1 182336859 182336917 -60327436 + AT_rich Low_complexity Low_complexity 1 58 0 836 49 42 106 chr1 182337304 182337446 -60326907 - AluSg/x SINE Alu -11 299 167 6510 76 4 0 chr1 182338668 182339645 -60324708 - L1PA7 LINE L1 0 6154 5171 8587 102 19 1 chr1 182339645 182340869 -60323484 - L1P3 LINE L1 -4977 1484 239 200 390 40 35 chr1 182341731 182341959 -60322394 - L2 LINE L2 -1262 2052 1824 663 252 39 1 chr1 182341961 182342168 -60322185 + L1MD3 LINE L1 7559 7984 -11 607 274 32 23 chr1 182342257 182342476 -60321877 + L1MC4a LINE L1 6383 6603 -1205 253 209 0 90 chr1 182342618 182342685 -60321668 - L1MC4 LINE L1 -1278 6764 6704 216 0 0 0 chr1 182342771 182342795 -60321558 + (TG)n Simple_repeat Simple_repeat 2 25 0 434 211 16 47 chr1 182342801 182342929 -60321424 + L1MC4 LINE L1 7919 8042 0 21 36 0 0 chr1 182342978 182343006 -60321347 + AT_rich Low_complexity Low_complexity 1 28 0 662 294 38 25 chr1 182343072 182343307 -60321046 - MIR SINE MIR 0 262 25 21 0 0 0 chr1 182343557 182343578 -60320775 + AT_rich Low_complexity Low_complexity 1 21 0 257 235 0 29 chr1 182343913 182343919 -60320434 + (TATG)n Simple_repeat Simple_repeat 2 7 -60 1571 196 0 21 chr1 182343919 182344210 -60320143 + AluJb SINE Alu 1 285 -27 257 235 0 29 chr1 182344210 182344271 -60320082 + (TATG)n Simple_repeat Simple_repeat 7 67 0 22 0 0 0 chr1 182344374 182344396 -60319957 + AT_rich Low_complexity Low_complexity 1 22 0 583 178 25 17 chr1 182344949 182345067 -60319286 + FLAM_A SINE Alu 1 119 -14 237 65 0 0 chr1 182346181 182346212 -60318141 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 203 242 0 30 chr1 182346963 182347029 -60317324 + A-rich Low_complexity Low_complexity 2 65 0 25 23 0 23 chr1 182347250 182347274 -60317079 + AT_rich Low_complexity Low_complexity 1 25 -17 2114 82 23 39 chr1 182347274 182347579 -60316774 - AluY SINE Alu -11 300 1 25 23 0 23 chr1 182347579 182347597 -60316756 + AT_rich Low_complexity Low_complexity 25 42 0 1315 287 52 68 chr1 182348610 182349095 -60315258 + MLT1H LTR MaLR 67 543 -6 703 215 0 38 chr1 182349161 182349262 -60315091 - MLT1A1 LTR MaLR -202 163 69 1741 168 68 50 chr1 182349262 182349686 -60314667 + MSTB1 LTR MaLR 1 432 0 703 215 0 38 chr1 182349686 182349742 -60314611 - MLT1A1 LTR MaLR -296 69 12 30 27 0 0 chr1 182350041 182350078 -60314275 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 182350939 182350968 -60313385 + AT_rich Low_complexity Low_complexity 1 29 0 479 321 142 46 chr1 182352314 182352767 -60311586 + L2 LINE L2 2702 3197 -116 6301 147 38 34 chr1 182352856 182353909 -60310444 + Tigger3b DNA MER2_type 1 1063 -1965 2113 82 3 7 chr1 182353909 182354220 -60310133 + AluY SINE Alu 1 310 0 6301 147 38 34 chr1 182354220 182354390 -60309963 + Tigger3b DNA MER2_type 1063 1231 0 22 80 0 0 chr1 182354548 182354598 -60309755 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr1 182354659 182354681 -60309672 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 182354818 182354845 -60309508 + AT_rich Low_complexity Low_complexity 1 27 0 186 43 0 0 chr1 182355086 182355109 -60309244 + (A)n Simple_repeat Simple_repeat 1 23 0 309 109 0 0 chr1 182355828 182355874 -60308479 + (TG)n Simple_repeat Simple_repeat 2 47 0 281 231 35 6 chr1 182355879 182356048 -60308305 + (TA)n Simple_repeat Simple_repeat 2 175 0 21 0 0 0 chr1 182356297 182356318 -60308035 + AT_rich Low_complexity Low_complexity 1 21 0 2005 84 63 3 chr1 182358556 182358843 -60305510 - AluY SINE Alu -7 304 1 239 353 43 54 chr1 182359356 182359634 -60304719 + L2 LINE L2 2480 2754 -560 28 0 0 0 chr1 182360355 182360383 -60303970 + AT_rich Low_complexity Low_complexity 1 28 0 280 153 34 0 chr1 182360669 182360728 -60303625 + MER4-int LTR ERV1 1103 1163 -5435 2020 160 88 5 chr1 182362518 182362892 -60301461 - MSTA LTR MaLR -8 420 16 1242 242 17 7 chr1 182364204 182364501 -60299852 - AluJo SINE Alu -12 300 1 1612 187 0 0 chr1 182365784 182366057 -60298296 + AluJb SINE Alu 30 302 -10 21 0 0 0 chr1 182366180 182366201 -60298152 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 182367403 182367428 -60296925 + AT_rich Low_complexity Low_complexity 1 25 0 302 299 34 45 chr1 182367811 182367988 -60296365 + L1ME1 LINE L1 701 875 -5667 2986 288 119 38 chr1 182368112 182369911 -60294442 + L1ME1 LINE L1 1096 2748 -3896 306 0 0 0 chr1 182369911 182369945 -60294408 + (CA)n Simple_repeat Simple_repeat 2 35 0 2986 288 119 38 chr1 182369945 182370592 -60293761 + L1ME1 LINE L1 2748 3341 -3303 333 0 0 0 chr1 182370592 182370629 -60293724 + (CA)n Simple_repeat Simple_repeat 2 38 0 2986 288 119 38 chr1 182370629 182371433 -60292920 + L1ME1 LINE L1 3341 4615 -2029 1082 214 5 0 chr1 182371433 182371653 -60292700 + Tigger2 DNA MER2_type 1 221 -2497 604 231 7 20 chr1 182371646 182371793 -60292560 + Tigger2 DNA MER2_type 2573 2717 -1 * 572 302 29 29 chr1 182371793 182372108 -60292245 + L1ME1 LINE L1 4613 4927 -1717 572 290 164 3 chr1 182372143 182372460 -60291893 + L1ME1 LINE L1 6284 6651 -13 210 158 0 0 chr1 182372474 182372512 -60291841 + A-rich Low_complexity Low_complexity 1 38 0 191 224 41 0 chr1 182372754 182372803 -60291550 + L2 LINE L2 3263 3313 0 29 84 0 0 chr1 182373142 182373213 -60291140 + AT_rich Low_complexity Low_complexity 1 71 0 183 42 0 0 chr1 182374171 182374195 -60290158 + (CA)n Simple_repeat Simple_repeat 2 25 0 1693 163 34 25 chr1 182374759 182375084 -60289269 + MER41B LTR ERV1 220 547 -88 2199 131 11 3 chr1 182376234 182376592 -60287761 - L1PB1 LINE L1 0 6151 5791 558 0 0 0 chr1 182376592 182376654 -60287699 + (TA)n Simple_repeat Simple_repeat 1 62 0 357 24 0 0 chr1 182376653 182376695 -60287658 + (CA)n Simple_repeat Simple_repeat 2 43 0 * 236 192 0 0 chr1 182376734 182376786 -60287567 + (TA)n Simple_repeat Simple_repeat 2 53 0 4028 181 16 4 chr1 182376792 182377429 -60286924 - L1PB1 LINE L1 -362 5789 5161 1894 142 7 3 chr1 182377429 182377724 -60286629 - AluSx SINE Alu -16 296 1 4028 181 16 4 chr1 182377724 182378454 -60285899 - L1PB1 LINE L1 -990 5161 4405 2709 128 81 86 chr1 182378454 182379056 -60285297 - Tigger1 DNA MER2_type -1765 653 55 301 109 18 60 chr1 182379070 182379133 -60285220 + Alu SINE Alu 237 289 -12 402 305 6 67 chr1 182379133 182379297 -60285056 - L2 LINE L2 -18 3295 3142 1126 177 81 0 chr1 182379307 182379516 -60284837 - AluSx SINE Alu -86 226 1 321 393 7 7 chr1 182379559 182379694 -60284659 + L2 LINE L2 3138 3272 0 203 152 0 0 chr1 182379922 182379955 -60284398 + CT-rich Low_complexity Low_complexity 2 34 0 376 303 53 8 chr1 182380330 182380462 -60283891 - MLT1J1 LTR MaLR -288 158 21 22 56 0 0 chr1 182381231 182381267 -60283086 + AT_rich Low_complexity Low_complexity 1 36 0 452 293 0 0 chr1 182381771 182381877 -60282476 - MER33 DNA MER1_type -212 112 7 181 333 0 0 chr1 182382233 182382278 -60282075 - L2 LINE L2 -1573 1741 1697 859 204 63 0 chr1 182383111 182383302 -60281051 - MER3 DNA MER1_type -6 203 1 1863 206 18 107 chr1 182385499 182385636 -60278717 - MER67D LTR ERV1 -4 510 362 1413 123 0 9 chr1 182385636 182385864 -60278489 - L1PA13 LINE L1 -15 6148 5923 1863 206 18 107 chr1 182385864 182386280 -60278073 - MER67D LTR ERV1 -152 362 6 2644 210 90 53 chr1 182386328 182387199 -60277154 - L1MC4a LINE L1 0 7808 6906 276 245 149 11 chr1 182387533 182387627 -60276726 - MLT1J2 LTR MaLR -308 142 36 246 312 14 80 chr1 182387932 182388070 -60276283 + L2 LINE L2 3183 3311 -2 24 67 0 0 chr1 182388180 182388225 -60276128 + AT_rich Low_complexity Low_complexity 1 45 0 529 312 123 22 chr1 182388414 182388720 -60275633 + MLT1F1 LTR MaLR 1 292 -298 541 264 13 26 chr1 182388746 182388901 -60275452 + MLT1F1 LTR MaLR 386 538 -29 513 292 52 49 chr1 182388903 182389191 -60275162 + L2 LINE L2 3021 3309 -4 6647 79 3 0 chr1 182389231 182390830 -60273523 + L1PA7 LINE L1 4549 6154 0 2055 174 30 39 chr1 182392729 182393165 -60271188 + MSTB1 LTR MaLR 1 432 0 1366 218 67 79 chr1 182393370 182393875 -60270478 - MLT1D LTR MaLR 0 505 7 1735 119 31 34 chr1 182393984 182394277 -60270076 + AluSg SINE Alu 1 292 -18 256 238 56 91 chr1 182395533 182395676 -60268677 + L1ME LINE L1 5614 5751 -370 252 375 73 26 chr1 182395682 182395914 -60268439 + L2 LINE L2 2629 2871 -443 527 369 59 22 chr1 182395941 182396312 -60268041 + L2 LINE L2 2927 3311 -2 423 230 10 10 chr1 182396872 182396972 -60267381 + LTR28 LTR ERV1 1 100 -920 2257 198 90 86 chr1 182397040 182397791 -60266562 + LTR28 LTR ERV1 119 1020 0 1133 167 10 5 chr1 182398215 182398413 -60265940 - Tigger2 DNA MER2_type -4 2714 2516 228 184 82 0 chr1 182398409 182398458 -60265895 + MLT1F1 LTR MaLR 543 595 0 * 4275 143 26 22 chr1 182398568 182399322 -60265031 - Tigger2 DNA MER2_type -1961 757 1 744 121 30 0 chr1 182399703 182399835 -60264518 + L1PA14 LINE L1 6025 6160 -1 713 167 6 69 chr1 182400512 182400686 -60263667 + FRAM SINE Alu 1 163 -3 25 0 0 0 chr1 182400775 182400800 -60263553 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr1 182401187 182401229 -60263124 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 182401335 182401356 -60262997 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr1 182401664 182401706 -60262647 + (TG)n Simple_repeat Simple_repeat 2 43 0 3123 213 39 25 chr1 182402492 182402809 -60261544 - L1MA9 LINE L1 -38 6274 5963 272 70 23 0 chr1 182402809 182402852 -60261501 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 3123 213 39 25 chr1 182402852 182403364 -60260989 - L1MA9 LINE L1 -349 5963 5434 1321 209 11 7 chr1 182403372 182403649 -60260704 - AluJo SINE Alu -24 288 11 2112 222 193 50 chr1 182403667 182404125 -60260228 - L1MA9 LINE L1 -743 5403 5012 304 75 0 0 chr1 182404125 182404165 -60260188 - Alu SINE Alu -268 40 1 2112 222 193 50 chr1 182404165 182404786 -60259567 - L1MA9 LINE L1 -1134 5012 4124 713 226 95 12 chr1 182404755 182404998 -60259355 - L1MA9 LINE L1 -2667 3479 3217 * 23 0 0 0 chr1 182405337 182405360 -60258993 + AT_rich Low_complexity Low_complexity 1 23 0 709 138 51 22 chr1 182405412 182405550 -60258803 - L1MB1 LINE L1 -6 6162 6021 2880 178 25 17 chr1 182405552 182406154 -60258199 - L1MB1 LINE L1 -279 5889 5283 1697 199 34 84 chr1 182406168 182406610 -60257743 + MSTC LTR MaLR 9 428 0 599 218 0 62 chr1 182406610 182406803 -60257550 - L1MB1 LINE L1 -873 5273 5093 * 925 274 80 0 chr1 182406801 182407075 -60257278 + L1MB1 LINE L1 4792 5087 -1059 2055 187 23 46 chr1 182407541 182408018 -60256335 - MLT1C LTR MaLR -1 466 1 658 297 63 63 chr1 182408086 182408513 -60255840 - L2 LINE L2 -640 2674 2248 854 301 137 13 chr1 182408808 182409203 -60255150 + L2 LINE L2 2862 3305 -8 28 29 0 0 chr1 182409922 182409957 -60254396 + AT_rich Low_complexity Low_complexity 1 35 0 275 104 21 0 chr1 182411290 182411338 -60253015 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 221 224 0 0 chr1 182412233 182412282 -60252071 - L2 LINE L2 -4 3268 3220 322 369 52 24 chr1 182412555 182412807 -60251546 - MIR SINE MIR -3 259 1 39 38 0 0 chr1 182412885 182412938 -60251415 + AT_rich Low_complexity Low_complexity 1 53 0 1631 116 26 4 chr1 182414358 182414626 -60249727 - L1MA2 LINE L1 0 6304 6031 276 169 0 0 chr1 182414785 182414823 -60249530 + (TG)n Simple_repeat Simple_repeat 2 42 -24 249 108 0 0 chr1 182414823 182414860 -60249493 + (TA)n Simple_repeat Simple_repeat 1 37 0 276 169 0 0 chr1 182414860 182414886 -60249467 + (TG)n Simple_repeat Simple_repeat 41 66 0 1812 161 120 38 chr1 182416037 182416557 -60247796 - MLT2A2 LTR ERVL 0 554 1 2259 156 71 2 chr1 182417461 182417928 -60246425 + L1MA7 LINE L1 5787 6285 -6 22 0 0 0 chr1 182417928 182417950 -60246403 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 182418012 182418035 -60246318 + AT_rich Low_complexity Low_complexity 1 23 0 2342 33 0 0 chr1 182418051 182418326 -60246027 - AluY SINE Alu -13 298 24 4736 136 19 6 chr1 182418330 182418698 -60245655 - L1MA4A LINE L1 -30 6273 5906 931 290 51 25 chr1 182418698 182419188 -60245165 - L1MC4a LINE L1 -1913 5895 5393 180 0 0 0 chr1 182419647 182419667 -60244686 + (TAA)n Simple_repeat Simple_repeat 2 21 0 26 64 0 0 chr1 182419967 182420014 -60244339 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr1 182420957 182420990 -60243363 + AT_rich Low_complexity Low_complexity 1 33 0 258 321 38 19 chr1 182421178 182421284 -60243069 - MIR SINE MIR 0 262 155 21 0 0 0 chr1 182421575 182421596 -60242757 + AT_rich Low_complexity Low_complexity 1 21 0 251 270 20 30 chr1 182422649 182422749 -60241604 + (TATG)n Simple_repeat Simple_repeat 2 100 0 210 217 0 33 chr1 182422722 182422750 -60241603 + (TCTA)n Simple_repeat Simple_repeat 1 28 -30 * 2154 169 48 14 chr1 182422750 182423164 -60241189 - MSTA LTR MaLR 0 428 1 210 217 0 33 chr1 182423164 182423195 -60241158 + (TCTA)n Simple_repeat Simple_repeat 28 58 0 429 328 67 8 chr1 182423780 182424018 -60240335 + MER41B LTR ERV1 179 430 -205 2751 176 19 64 chr1 182425077 182425718 -60238635 - LTR9 LTR ERV1 0 612 1 3967 180 55 31 chr1 182426763 182426929 -60237424 + LOR1-int LTR ERV1 786 947 -839 4148 202 25 22 chr1 182426929 182427913 -60236440 + LTR57-int LTR ERVL 608 1594 -3749 3967 180 55 31 chr1 182427913 182428059 -60236294 + LOR1-int LTR ERV1 947 1777 -9 873 234 105 63 chr1 182428062 182428374 -60235979 + LOR1-int LTR ERV1 1936 2276 -4482 1891 177 0 3 chr1 182428374 182428685 -60235668 + AluSx SINE Alu 1 310 -2 873 234 105 63 chr1 182428685 182428847 -60235506 + LOR1-int LTR ERV1 2276 2430 -4328 869 319 60 29 chr1 182430117 182430566 -60233787 + LTR33 LTR ERVL 59 521 0 285 266 0 0 chr1 182430566 182430630 -60233723 - MIR SINE MIR -181 81 18 2047 101 7 26 chr1 182431701 182432008 -60232345 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr1 182432552 182432580 -60231773 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr1 182432803 182432837 -60231516 + (TG)n Simple_repeat Simple_repeat 2 35 0 25 0 0 0 chr1 182433205 182433230 -60231123 + AT_rich Low_complexity Low_complexity 1 25 0 388 327 23 45 chr1 182433702 182433922 -60230431 - L2 LINE L2 0 3313 3099 945 285 22 52 chr1 182433998 182434401 -60229952 - MLT2C1 LTR ERVL -6 391 1 1258 302 162 19 chr1 182434403 182434503 -60229850 - L2 LINE L2 -338 2976 2892 1455 202 84 32 chr1 182434503 182434850 -60229503 - MLT1A1 LTR MaLR 0 365 1 1258 302 162 19 chr1 182434850 182435441 -60228912 - L2 LINE L2 -422 2892 2186 221 323 31 0 chr1 182437719 182437784 -60226569 + MIR3 SINE MIR 139 205 -3 2300 150 39 2 chr1 182437799 182438212 -60226141 + MSTA LTR MaLR 1 428 0 1047 135 0 0 chr1 182438431 182438601 -60225752 + (TA)n Simple_repeat Simple_repeat 1 170 0 2020 117 0 7 chr1 182438603 182438894 -60225459 - AluSq SINE Alu -19 294 6 389 337 42 12 chr1 182439035 182439201 -60225152 + MIR SINE MIR 52 222 -40 862 181 66 88 chr1 182439398 182439784 -60224569 + L1PB4 LINE L1 5631 5942 -224 532 266 0 0 chr1 182439785 182439894 -60224459 + FLAM_C SINE Alu 3 111 -32 2414 60 0 19 chr1 182440746 182441063 -60223290 + AluY SINE Alu 1 311 0 431 283 48 7 chr1 182441291 182441436 -60222917 - LTR16A1 LTR ERVL -130 327 177 1808 166 7 7 chr1 182442047 182442337 -60222016 + AluSx SINE Alu 1 290 -22 312 240 34 75 chr1 182442635 182442781 -60221572 - L1 LINE L1 -965 5181 5042 6084 63 4 0 chr1 182442787 182443596 -60220757 + L1PA5 LINE L1 5356 6167 0 1523 238 24 9 chr1 182443611 182444035 -60220318 + L1 LINE L1 3204 3633 -2513 720 258 182 25 chr1 182444035 182444310 -60220043 + MSTD LTR MaLR 79 396 0 243 196 20 0 chr1 182444770 182444821 -60219532 + CT-rich Low_complexity Low_complexity 1 52 0 1630 157 20 3 chr1 182446537 182446831 -60217522 + L1MA8 LINE L1 5993 6291 0 1513 213 17 3 chr1 182448161 182448462 -60215891 - AluJo SINE Alu -7 305 1 279 191 157 11 chr1 182448694 182448783 -60215570 + MIR SINE MIR 86 187 -75 1949 133 59 31 chr1 182448787 182449141 -60215212 - THE1B LTR MaLR 0 364 1 9427 121 7 8 chr1 182449141 182450521 -60213832 - THE1B-int LTR MaLR 0 1580 202 2000 125 50 61 chr1 182450522 182450882 -60213471 - THE1B LTR MaLR -8 356 1 8033 115 33 28 chr1 182451013 182452294 -60212059 - HSMAR1 DNA Mariner 0 1287 1 180 250 94 0 chr1 182454207 182454271 -60210082 + MIR SINE MIR 128 197 -65 379 312 0 35 chr1 182454387 182454528 -60209825 + L2 LINE L2 2926 3061 -252 1103 171 46 112 chr1 182454542 182454884 -60209469 + AluJb SINE Alu 1 322 0 871 183 51 6 chr1 182455167 182455342 -60209011 - MLT1A2 LTR MaLR 0 374 192 889 203 28 0 chr1 182455410 182455592 -60208761 - MLT1A2 LTR MaLR -187 187 1 207 0 0 0 chr1 182455621 182455644 -60208709 + (TG)n Simple_repeat Simple_repeat 2 24 0 28 0 0 0 chr1 182455803 182455831 -60208522 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 182456149 182456179 -60208174 + AT_rich Low_complexity Low_complexity 1 30 0 2004 115 0 3 chr1 182456407 182456693 -60207660 + AluSq SINE Alu 1 285 -28 382 39 0 0 chr1 182456693 182456745 -60207608 - L1PA4 LINE L1 -167 5988 5937 1214 68 0 28 chr1 182456745 182456915 -60207438 + L1PA4 LINE L1 5985 6155 0 243 0 0 0 chr1 182456924 182456951 -60207402 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2047 137 3 6 chr1 182457396 182457709 -60206644 - AluSx SINE Alu 0 312 1 1328 251 97 134 chr1 182457728 182458998 -60205355 - L1MC4 LINE L1 -3 8039 6722 1883 153 7 0 chr1 182458998 182459299 -60205054 + AluSq SINE Alu 1 303 -10 1328 251 97 134 chr1 182459299 182459698 -60204655 - L1MC4 LINE L1 -1320 6722 6309 423 0 0 0 chr1 182459698 182459745 -60204608 + (CA)n Simple_repeat Simple_repeat 2 48 0 1328 251 97 134 chr1 182459745 182460542 -60203811 - L1MC4 LINE L1 -1733 6309 5605 797 208 50 23 chr1 182460550 182460893 -60203460 + MLT1B LTR MaLR 3 390 0 872 289 46 33 chr1 182460908 182461596 -60202757 - L1MC4 LINE L1 -838 5308 4895 23 0 0 0 chr1 182461666 182461689 -60202664 + AT_rich Low_complexity Low_complexity 1 23 0 3081 160 26 0 chr1 182461690 182462276 -60202077 - L1MA2 LINE L1 0 7723 7123 13446 176 33 39 chr1 182462276 182464606 -60199747 - L1MA2 LINE L1 -744 6821 4479 180 0 0 0 chr1 182464606 182464626 -60199727 + (TC)n Simple_repeat Simple_repeat 1 20 0 13446 176 33 39 chr1 182464626 182466517 -60197836 - L1MA2 LINE L1 -3086 4479 2736 225 65 0 0 chr1 182466517 182466548 -60197805 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 13446 176 33 39 chr1 182466548 182468054 -60196299 - L1MA2 LINE L1 -4829 2736 1222 1538 199 0 0 chr1 182468044 182468295 -60196058 + L1M1 LINE L1 354 604 -6961 * 6452 218 33 2 chr1 182468260 182469483 -60194870 - L1MA2 LINE L1 -6292 1273 13 23 33 0 0 chr1 182469922 182469952 -60194401 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr1 182470272 182470321 -60194032 + AT_rich Low_complexity Low_complexity 1 49 0 27 96 0 0 chr1 182470349 182470432 -60193921 + AT_rich Low_complexity Low_complexity 1 83 0 3446 143 39 10 chr1 182472687 182473280 -60191073 + L1PA15 LINE L1 5555 6164 -1 1630 105 21 0 chr1 182474012 182474251 -60190102 + L1MA1 LINE L1 6055 6298 -4 21 0 0 0 chr1 182474270 182474291 -60190062 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 182475171 182475192 -60189161 + AT_rich Low_complexity Low_complexity 1 21 0 216 97 0 0 chr1 182475343 182475374 -60188979 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 342 67 0 0 chr1 182475406 182475451 -60188902 + (CA)n Simple_repeat Simple_repeat 2 46 0 374 23 0 0 chr1 182476878 182476922 -60187431 - tRNA-Met-e tRNA tRNA -31 44 1 293 412 32 5 chr1 182477814 182478001 -60186352 - MIR SINE MIR -60 202 11 5995 173 43 8 chr1 182478214 182479403 -60184950 - Tigger3b DNA MER2_type -1 1230 1 685 252 0 7 chr1 182479736 182479883 -60184470 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr1 182479883 182479905 -60184448 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 2623 42 0 0 chr1 182480209 182480520 -60183833 - AluY SINE Alu 0 311 1 202 407 26 31 chr1 182480801 182480995 -60183358 + L3 LINE CR1 914 1106 -471 2125 144 37 17 chr1 182481526 182481881 -60182472 + THE1B LTR MaLR 1 362 -2 22 35 0 0 chr1 182482545 182482574 -60181779 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr1 182482782 182482817 -60181536 + AT_rich Low_complexity Low_complexity 1 35 0 1212 96 0 0 chr1 182483231 182483408 -60180945 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 454 186 35 12 chr1 182483439 182483611 -60180742 + CT-rich Low_complexity Low_complexity 2 177 0 469 180 48 1 chr1 182484023 182484129 -60180224 + L1M4 LINE L1 4681 4790 -1356 2326 71 3 0 chr1 182484143 182484425 -60179928 - AluY SINE Alu -20 291 9 3534 252 35 39 chr1 182484557 182485805 -60178548 + L1ME3A LINE L1 3968 5211 -935 4816 180 28 14 chr1 182485842 182487344 -60177009 + L1MA7 LINE L1 4760 6282 -9 28 0 0 0 chr1 182487371 182487399 -60176954 + AT_rich Low_complexity Low_complexity 1 28 0 32 75 0 0 chr1 182489512 182489579 -60174774 + AT_rich Low_complexity Low_complexity 1 67 0 2195 171 16 39 chr1 182489925 182490411 -60173942 - L1MA7 LINE L1 -17 6274 5800 314 91 36 0 chr1 182490415 182490470 -60173883 - AluJb SINE Alu 0 302 246 547 161 336 0 chr1 182490470 182490607 -60173746 - AluJb SINE Alu -98 214 32 998 192 6 0 chr1 182490607 182490789 -60173564 - L1 LINE L1 -2360 3786 3604 * 2565 227 69 6 chr1 182490786 182491567 -60172786 + L1 LINE L1 2490 3319 -2827 21 0 0 0 chr1 182491606 182491627 -60172726 + AT_rich Low_complexity Low_complexity 1 21 0 360 315 30 25 chr1 182492048 182492245 -60172108 - L1M4 LINE L1 -1139 5007 4810 180 217 0 0 chr1 182492273 182492319 -60172034 + (TA)n Simple_repeat Simple_repeat 1 46 0 378 298 79 11 chr1 182492414 182492592 -60171761 + L1ME3A LINE L1 5418 5607 -563 575 214 0 0 chr1 182492592 182492695 -60171658 - Tigger7 DNA MER2_type 0 2487 2385 * 1148 263 8 8 chr1 182492690 182492949 -60171404 - Tigger7 DNA MER2_type -2220 267 9 322 302 107 57 chr1 182492964 182493272 -60171081 + L1ME3A LINE L1 5614 5956 -214 1946 104 18 0 chr1 182493272 182493550 -60170803 + AluSg SINE Alu 3 285 -25 322 302 107 57 chr1 182493550 182493718 -60170635 + L1ME3A LINE L1 5956 6114 -56 208 143 0 0 chr1 182495333 182495368 -60168985 + (A)n Simple_repeat Simple_repeat 1 35 0 24 0 0 0 chr1 182495475 182495499 -60168854 + AT_rich Low_complexity Low_complexity 1 24 0 323 261 170 7 chr1 182495752 182495905 -60168448 + MIR SINE MIR 81 258 -4 21 57 0 0 chr1 182497376 182497411 -60166942 + AT_rich Low_complexity Low_complexity 1 35 0 463 304 58 0 chr1 182497702 182497840 -60166513 + MIR SINE MIR 93 238 -24 789 312 124 31 chr1 182497881 182498461 -60165892 - L2 LINE L2 0 3313 2665 722 313 154 36 chr1 182498502 182499061 -60165292 - L2 LINE L2 -1893 1421 797 213 357 31 51 chr1 182499233 182499331 -60165022 - MIR3 SINE MIR -21 187 92 22 0 0 0 chr1 182499572 182499594 -60164759 + AT_rich Low_complexity Low_complexity 1 22 0 231 303 42 84 chr1 182500309 182500383 -60163970 - MLT1E LTR MaLR -341 252 183 2383 65 7 3 chr1 182500383 182500693 -60163660 - AluY SINE Alu 0 311 1 231 303 42 84 chr1 182500693 182500737 -60163616 - MLT1E LTR MaLR -410 183 139 21 36 0 0 chr1 182501024 182501052 -60163301 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr1 182501108 182501158 -60163195 + AT_rich Low_complexity Low_complexity 1 50 0 581 159 18 0 chr1 182501196 182501309 -60163044 + L1PA6 LINE L1 6035 6149 -5 29 78 0 0 chr1 182502280 182502344 -60162009 + AT_rich Low_complexity Low_complexity 1 64 0 3108 112 30 0 chr1 182502811 182503250 -60161103 - MLT2A2 LTR ERVL 0 453 2 38050 98 15 1 chr1 182503251 182508755 -60155598 - HERVL-A2 LTR ERVL 0 5654 2 3018 110 32 0 chr1 182508756 182509194 -60155159 - MLT2A2 LTR ERVL 0 453 2 1316 164 173 15 chr1 182510316 182510640 -60153713 + THE1C LTR MaLR 1 375 0 2065 122 0 3 chr1 182510733 182511020 -60153333 - AluSx SINE Alu -16 296 11 251 256 250 17 chr1 182511385 182511557 -60152796 - MIR SINE MIR -42 220 9 281 248 41 13 chr1 182511791 182511880 -60152473 - HsTC2 DNA Tc2 -87 1811 1 604 172 17 0 chr1 182512798 182512914 -60151439 - FLAM_C SINE Alu -25 118 1 24 0 0 0 chr1 182513582 182513606 -60150747 + AT_rich Low_complexity Low_complexity 1 24 0 209 269 77 26 chr1 182513843 182513921 -60150432 - L2 LINE L2 0 3272 3191 203 377 75 6 chr1 182514504 182514663 -60149690 + MIR SINE MIR 28 197 -65 1248 236 93 48 chr1 182514790 182515273 -60149080 - MLT1D LTR MaLR 0 505 1 21 71 0 0 chr1 182515487 182515529 -60148824 + AT_rich Low_complexity Low_complexity 1 42 0 383 317 25 86 chr1 182515647 182515972 -60148381 + L1MEd LINE L1 872 1176 -4943 283 312 28 9 chr1 182516019 182516128 -60148225 - L2 LINE L2 -431 2883 2773 455 270 36 40 chr1 182516543 182516765 -60147588 - L1M4 LINE L1 -936 5210 4990 2510 260 80 17 chr1 182516766 182517666 -60146687 - L1M4 LINE L1 -1922 4224 3239 441 0 0 0 chr1 182517666 182517715 -60146638 + (TG)n Simple_repeat Simple_repeat 2 50 0 2510 260 80 17 chr1 182517715 182517934 -60146419 - L1M4 LINE L1 -2907 3239 3035 339 287 9 9 chr1 182517940 182518048 -60146305 - L1MCb LINE L1 -5872 173 66 37 23 0 0 chr1 182518518 182518562 -60145791 + AT_rich Low_complexity Low_complexity 1 44 0 24 67 0 0 chr1 182519425 182519470 -60144883 + AT_rich Low_complexity Low_complexity 1 45 0 479 328 39 27 chr1 182519522 182519781 -60144572 - MIR SINE MIR 0 262 1 21 36 0 0 chr1 182520189 182520217 -60144136 + AT_rich Low_complexity Low_complexity 1 28 0 240 260 163 0 chr1 182520546 182520669 -60143684 - L1M4 LINE L1 -370 5808 5666 252 260 0 0 chr1 182522396 182522446 -60141907 - MLT1I LTR MaLR -222 187 138 5113 79 10 0 chr1 182523631 182524317 -60140036 - L1PA7 LINE L1 0 6154 5462 10189 93 4 4 chr1 182524318 182525767 -60138586 + L1PA7 LINE L1 3198 4646 -1500 6727 72 6 0 chr1 182525827 182527206 -60137147 + L1PA7 LINE L1 4769 6152 -2 1273 160 68 0 chr1 182527378 182527628 -60136725 + L1MC2 LINE L1 6055 6321 -23 3126 212 33 19 chr1 182527766 182528528 -60135825 - MER21B LTR ERV1 -14 849 17 510 61 0 0 chr1 182528563 182528629 -60135724 + (TA)n Simple_repeat Simple_repeat 2 67 0 44 84 0 0 chr1 182528901 182529008 -60135345 + AT_rich Low_complexity Low_complexity 1 107 0 21 0 0 0 chr1 182530240 182530261 -60134092 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 182530531 182530552 -60133801 + AT_rich Low_complexity Low_complexity 1 21 0 268 270 0 0 chr1 182530788 182530851 -60133502 - MIR SINE MIR -101 161 99 1539 171 88 20 chr1 182530851 182531202 -60133151 + THE1C LTR MaLR 1 375 0 9680 116 41 38 chr1 182531202 182532778 -60131575 + THE1C-int LTR MaLR 1 1580 0 1807 134 66 41 chr1 182532778 182533144 -60131209 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr1 182533232 182533256 -60131097 + AT_rich Low_complexity Low_complexity 1 24 0 1100 235 102 80 chr1 182533406 182534295 -60130058 - L1MC5 LINE L1 -60 7901 6993 339 170 45 0 chr1 182534410 182534480 -60129873 - L1MA5 LINE L1 -195 5961 5891 330 264 49 31 chr1 182534489 182534652 -60129701 + L1MCa LINE L1 1787 1952 -4474 861 280 77 43 chr1 182534669 182535291 -60129062 + L1MCa LINE L1 2089 2731 -3876 445 304 92 48 chr1 182536260 182536487 -60127866 + MIR SINE MIR 23 259 -3 184 194 0 69 chr1 182537188 182537260 -60127093 + GA-rich Low_complexity Low_complexity 6 72 0 268 181 24 72 chr1 182537272 182537355 -60126998 - LTR41 LTR ERVL -1 772 694 382 278 98 41 chr1 182538047 182538241 -60126112 - LTR41 LTR ERVL -568 205 1 312 292 51 56 chr1 182538698 182538914 -60125439 + L1M4 LINE L1 4836 5050 -1096 29 47 0 0 chr1 182539205 182539248 -60125105 + AT_rich Low_complexity Low_complexity 1 43 0 634 105 19 0 chr1 182540282 182540387 -60123966 + (TC)n Simple_repeat Simple_repeat 2 108 0 2291 88 0 0 chr1 182540388 182540683 -60123670 - AluSc SINE Alu -14 295 1 200 35 35 0 chr1 182540824 182540853 -60123500 + (TC)n Simple_repeat Simple_repeat 1 30 0 235 143 0 0 chr1 182540919 182540954 -60123399 + MLT1A2 LTR MaLR 1 35 -339 199 51 0 51 chr1 182541761 182541800 -60122553 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 476 174 14 29 chr1 182542324 182542462 -60121891 + CT-rich Low_complexity Low_complexity 3 138 0 446 205 139 0 chr1 182542487 182542609 -60121744 - L1MD2 LINE L1 -164 6195 6057 1381 193 81 29 chr1 182542609 182542956 -60121397 - MLT1A1 LTR MaLR 0 365 1 2639 222 28 27 chr1 182543038 182543993 -60120360 - L1MD2 LINE L1 -427 5932 4980 656 252 7 103 chr1 182543989 182544271 -60120082 - L1MD2 LINE L1 -1988 4158 3904 * 1881 156 3 7 chr1 182544556 182544863 -60119490 - AluSq SINE Alu -7 306 1 514 307 82 26 chr1 182545651 182545747 -60118606 - L2 LINE L2 -395 2919 2830 2215 91 37 0 chr1 182545747 182546043 -60118310 + AluY SINE Alu 1 307 -4 514 307 82 26 chr1 182546043 182546179 -60118174 - L2 LINE L2 -484 2830 2668 6295 76 14 2 chr1 182546179 182546996 -60117357 - LTR12 LTR ERV1 0 826 1 514 307 82 26 chr1 182546996 182547029 -60117324 - L2 LINE L2 -646 2668 2638 268 200 31 0 chr1 182547030 182547095 -60117258 + L1M4 LINE L1 4965 5031 -1115 741 126 76 0 chr1 182547196 182547315 -60117038 + AluSg/x SINE Alu 169 296 -16 2057 90 21 3 chr1 182547688 182547978 -60116375 + AluY SINE Alu 1 295 -16 260 320 109 26 chr1 182548379 182548535 -60115818 + MIR3 SINE MIR 19 187 -21 282 329 82 41 chr1 182548567 182548673 -60115680 + MIR SINE MIR 42 159 -103 3020 155 2 4 chr1 182548673 182549171 -60115182 - LOR1a LTR ERV1 0 497 1 282 329 82 41 chr1 182549171 182549234 -60115119 + MIR SINE MIR 159 218 -44 301 234 0 75 chr1 182549976 182550070 -60114283 + MLT1F LTR MaLR 271 357 -185 1073 236 106 22 chr1 182550240 182550265 -60114088 - MLT1B LTR MaLR 0 390 369 207 0 0 0 chr1 182550265 182550288 -60114065 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1073 236 106 22 chr1 182550288 182550622 -60113731 - MLT1B LTR MaLR -21 369 1 967 213 146 26 chr1 182550657 182550925 -60113428 + AluJo SINE Alu 1 300 -2 3564 155 46 79 chr1 182551703 182552574 -60111779 + Tigger3b DNA MER2_type 2 843 -388 228 328 53 23 chr1 182552937 182553068 -60111285 - L2 LINE L2 -191 3081 2947 937 96 15 0 chr1 182553787 182553923 -60110430 + LTR12 LTR ERV1 576 713 -1 1116 234 34 42 chr1 182554598 182554978 -60109375 - L1ME2 LINE L1 -86 6078 5702 294 280 0 13 chr1 182555396 182555471 -60108882 + MER58A DNA MER1_type 2 75 -32 377 313 9 0 chr1 182555482 182555594 -60108759 - HERV16 LTR ERVL -2379 2617 2505 1286 333 22 40 chr1 182555759 182556305 -60108048 - HERV16 LTR ERVL -2723 2273 1738 1989 135 7 0 chr1 182556322 182556611 -60107742 - AluSx SINE Alu -8 304 14 213 333 70 47 chr1 182556735 182556864 -60107489 - MIR SINE MIR -88 174 43 1897 264 28 21 chr1 182556893 182557426 -60106927 - MER74A LTR ERVL -17 541 5 1015 98 65 0 chr1 182558067 182558220 -60106133 - LTR19B LTR ERV1 -417 163 1 2148 105 0 0 chr1 182559989 182560284 -60104069 - AluY SINE Alu -16 295 1 304 248 101 8 chr1 182560642 182560771 -60103582 + L1MCc LINE L1 1243 1383 -5040 2098 113 3 3 chr1 182561581 182561881 -60102472 + AluSq SINE Alu 1 300 -13 416 246 187 12 chr1 182561934 182562105 -60102248 + MIR SINE MIR 32 232 -30 2301 66 9 19 chr1 182562443 182562762 -60101591 + L1PA6 LINE L1 5837 6152 -2 235 326 33 65 chr1 182562854 182563038 -60101315 + LTR16C LTR ERVL 312 489 -2 484 216 29 0 chr1 182563113 182563215 -60101138 - L1PB4 LINE L1 -12 6144 6040 359 211 197 24 chr1 182563571 182563784 -60100569 + L1MCc LINE L1 3484 3733 -3208 1739 261 75 34 chr1 182563892 182564487 -60099866 + L1PA13 LINE L1 1465 2082 -4715 1978 120 14 7 chr1 182564487 182564817 -60099536 + AluSx SINE Alu 1 332 0 1739 261 75 34 chr1 182564817 182564928 -60099425 + L1PA13 LINE L1 2082 2187 -4610 350 202 0 155 chr1 182565039 182565168 -60099185 - MER63 DNA MER1_type -97 739 5 264 300 12 0 chr1 182565327 182565407 -60098946 - MIR3 SINE MIR -9 199 119 371 127 16 0 chr1 182565900 182565963 -60098390 + MADE1 DNA Mariner 17 80 0 448 280 30 23 chr1 182566212 182566344 -60098009 - MIR SINE MIR -104 158 26 2311 247 68 23 chr1 182567024 182567973 -60096380 + L1M4 LINE L1 2278 3269 -2877 21 71 0 0 chr1 182568447 182568489 -60095864 + AT_rich Low_complexity Low_complexity 1 42 0 1707 170 0 42 chr1 182568620 182568932 -60095421 - AluJb SINE Alu -13 299 1 2012 125 0 0 chr1 182569302 182569581 -60094772 - AluSg SINE Alu -27 283 5 227 128 26 0 chr1 182570037 182570076 -60094277 + L2 LINE L2 3270 3309 -4 1204 168 10 0 chr1 182570891 182571099 -60093254 - MER2 DNA MER2_type -134 211 2 1166 234 35 65 chr1 182571220 182571775 -60092578 + MER39 LTR ERV1 9 707 0 908 259 56 11 chr1 182572166 182572302 -60092051 + L1 LINE L1 2306 2434 -3712 199 53 26 26 chr1 182572302 182572340 -60092013 + (TA)n Simple_repeat Simple_repeat 1 38 0 908 259 56 11 chr1 182572340 182572489 -60091864 + L1 LINE L1 2434 2604 -3542 1086 282 64 80 chr1 182572690 182573428 -60090925 - MER20B DNA MER1_type -57 726 1 382 316 99 20 chr1 182573431 182573776 -60090577 + L1ME3 LINE L1 5511 5882 -280 33 43 0 0 chr1 182577150 182577197 -60087156 + AT_rich Low_complexity Low_complexity 1 47 0 264 294 59 29 chr1 182577995 182578097 -60086256 + MIR SINE MIR 40 144 -64 1784 187 45 11 chr1 182578390 182578743 -60085610 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr1 182580799 182580820 -60083533 + AT_rich Low_complexity Low_complexity 1 21 0 432 221 35 76 chr1 182581037 182581209 -60083144 + MER58C DNA MER1_type 51 215 0 31 68 0 0 chr1 182582093 182582152 -60082201 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr1 182582303 182582324 -60082029 + AT_rich Low_complexity Low_complexity 1 21 0 79 48 0 20 chr1 182582354 182582501 -60081852 + AT_rich Low_complexity Low_complexity 1 144 0 1383 173 35 28 chr1 182582804 182583058 -60081295 + AluSx SINE Alu 46 301 -11 213 333 33 11 chr1 182583399 182583489 -60080864 - MIR SINE MIR -70 138 47 198 103 0 0 chr1 182583819 182583848 -60080505 + (TATAG)n Simple_repeat Simple_repeat 3 31 0 274 330 84 37 chr1 182584046 182584237 -60080116 - MIR SINE MIR -29 233 34 26 36 0 36 chr1 182585467 182585489 -60078864 + AT_rich Low_complexity Low_complexity 1 22 -31 7789 16 0 0 chr1 182585489 182586514 -60077839 - L1PA2 LINE L1 -2 6153 5129 26 36 0 36 chr1 182586514 182586546 -60077807 + AT_rich Low_complexity Low_complexity 22 53 0 361 283 42 33 chr1 182586655 182586775 -60077578 + L2 LINE L2 3193 3313 0 32 86 0 0 chr1 182586955 182587036 -60077317 + AT_rich Low_complexity Low_complexity 1 81 0 219 209 136 64 chr1 182587196 182587306 -60077047 - L2 LINE L2 -9 3304 3187 27672 111 4 4 chr1 182587714 182592744 -60071609 + L1PA7 LINE L1 1123 6153 -1 1398 258 131 16 chr1 182595976 182596473 -60067880 + MLT2B3 LTR ERVL 1 554 0 354 348 51 0 chr1 182597017 182597175 -60067178 + L2 LINE L2 577 742 -2572 851 340 144 25 chr1 182597204 182597892 -60066461 + L2 LINE L2 1463 2232 -1082 1544 241 49 31 chr1 182598016 182598468 -60065885 + MER74C LTR ERVL 1 460 0 353 297 85 6 chr1 182598468 182598633 -60065720 + LTR33 LTR ERVL 106 283 -238 291 304 0 52 chr1 182598713 182598848 -60065505 + LTR33 LTR ERVL 392 519 -2 582 319 120 25 chr1 182598859 182599135 -60065218 + L2 LINE L2 2593 2894 -420 21 57 0 0 chr1 182599422 182599457 -60064896 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr1 182599470 182599502 -60064851 + AT_rich Low_complexity Low_complexity 1 32 0 232 222 0 0 chr1 182599916 182599961 -60064392 + L1MCc LINE L1 114 158 -6265 1453 318 81 36 chr1 182599996 182601332 -60063021 + L1MCc LINE L1 241 1643 -4893 5855 112 18 0 chr1 182601343 182602215 -60062138 + L1PB2 LINE L1 5263 6150 -1 800 279 109 0 chr1 182602226 182602574 -60061779 + L1MCc LINE L1 3275 3660 -3281 224 423 31 0 chr1 182603269 182603366 -60060987 - L2 LINE L2 -22 3250 3151 244 383 8 0 chr1 182603577 182603697 -60060656 + L2 LINE L2 2628 2748 -566 238 341 87 8 chr1 182603841 182603967 -60060386 + L2 LINE L2 2958 3093 -179 853 288 21 9 chr1 182604853 182605086 -60059267 + MIR SINE MIR 27 262 0 283 167 0 0 chr1 182605913 182605961 -60058392 + MLT1D LTR MaLR 454 501 -4 188 67 33 0 chr1 182606022 182606052 -60058301 + (TAA)n Simple_repeat Simple_repeat 3 33 0 479 306 71 0 chr1 182606072 182606242 -60058111 - MIR SINE MIR -49 213 32 21 36 0 0 chr1 182606498 182606526 -60057827 + AT_rich Low_complexity Low_complexity 1 28 0 4014 200 31 37 chr1 182606593 182606984 -60057369 - L1MA7 LINE L1 -107 6184 5792 318 67 0 0 chr1 182606984 182607029 -60057324 + (TA)n Simple_repeat Simple_repeat 1 45 0 4014 200 31 37 chr1 182607029 182608022 -60056331 - L1MA7 LINE L1 -499 5792 4808 23 33 0 0 chr1 182608490 182608520 -60055833 + AT_rich Low_complexity Low_complexity 1 30 0 9934 26 2 1 chr1 182608582 182610166 -60054187 - L1PA4 LINE L1 -377 5778 4192 2755 64 8 0 chr1 182610166 182610525 -60053828 + L1PA4 LINE L1 5793 6155 0 29 0 0 0 chr1 182610530 182610559 -60053794 + AT_rich Low_complexity Low_complexity 1 29 0 223 37 0 0 chr1 182611271 182611298 -60053055 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2001 128 3 0 chr1 182611298 182611580 -60052773 - AluSx SINE Alu -29 283 1 5194 37 3 0 chr1 182611609 182612230 -60052123 + L1PA4 LINE L1 5530 6152 -3 24 32 0 0 chr1 182613023 182613054 -60051299 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 182613534 182613556 -60050797 + AT_rich Low_complexity Low_complexity 1 22 0 550 297 50 11 chr1 182613816 182613998 -60050355 + MIR SINE MIR 3 191 -71 696 259 83 4 chr1 182614901 182615129 -60049224 - L1M4 LINE L1 -6282 260 15 22 0 0 0 chr1 182615381 182615403 -60048950 + AT_rich Low_complexity Low_complexity 1 22 0 1235 179 65 48 chr1 182615614 182615905 -60048448 - AluJb SINE Alu -16 296 1 486 0 0 0 chr1 182616069 182616123 -60048230 + (TTTAA)n Simple_repeat Simple_repeat 2 55 0 671 173 27 0 chr1 182616134 182616244 -60048109 - FRAM SINE Alu -59 117 5 2514 121 25 0 chr1 182616248 182616654 -60047699 - L1PA8 LINE L1 -3 6484 6069 400 73 0 0 chr1 182616654 182616693 -60047660 - L1PA5 LINE L1 0 6154 6100 2893 61 0 0 chr1 182616693 182617068 -60047285 + L1P LINE L1 4657 5031 -1115 * 24273 158 19 22 chr1 182617062 182620073 -60044280 - L1PA8 LINE L1 -349 6097 3079 180 0 0 0 chr1 182620073 182620093 -60044260 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 24273 158 19 22 chr1 182620093 182620474 -60043879 - L1PA8 LINE L1 -3367 3079 2698 2029 148 0 7 chr1 182620474 182620784 -60043569 - AluSx SINE Alu -4 308 1 24273 158 19 22 chr1 182620784 182623280 -60041073 - L1PA8 LINE L1 -3748 2698 160 543 195 49 32 chr1 182623288 182623411 -60040942 - FLAM_C SINE Alu -6 137 13 6141 146 114 119 chr1 182623489 182625192 -60039161 + pTR5 LTR ERV1 743 2438 0 303 379 151 15 chr1 182626735 182627139 -60037214 + L2 LINE L2 2508 2966 -348 213 313 90 0 chr1 182627322 182627389 -60036964 + L2 LINE L2 3185 3257 -15 183 80 0 0 chr1 182627516 182627541 -60036812 + (TC)n Simple_repeat Simple_repeat 2 26 0 314 179 75 66 chr1 182629211 182629317 -60035036 - L1MA10 LINE L1 -2 6332 6226 462 172 55 14 chr1 182629330 182629345 -60035008 - L1MB1 LINE L1 -28 6161 6148 197 62 0 31 chr1 182629345 182629377 -60034976 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 462 172 55 14 chr1 182629377 182629480 -60034873 - L1MB1 LINE L1 -41 6148 6055 21 0 0 0 chr1 182629538 182629559 -60034794 + AT_rich Low_complexity Low_complexity 1 21 0 315 374 40 9 chr1 182630200 182630422 -60033931 - MLT1L LTR MaLR -263 352 124 1968 157 0 0 chr1 182631276 182631582 -60032771 + AluSx SINE Alu 1 306 -6 893 329 45 57 chr1 182631591 182632260 -60032093 + MLT2F LTR ERVL 3 663 0 2065 99 3 30 chr1 182632691 182632993 -60031360 + AluY SINE Alu 1 294 -17 288 316 0 0 chr1 182633203 182633282 -60031071 + GA-rich Low_complexity Low_complexity 2 80 0 552 289 34 27 chr1 182633445 182633708 -60030645 + L1MC4a LINE L1 5566 5830 -1978 910 311 151 10 chr1 182633708 182634126 -60030227 + L1M4 LINE L1 4 480 -6379 341 285 114 0 chr1 182634130 182634253 -60030100 + L1M4 LINE L1 3808 3944 -3013 853 256 16 16 chr1 182634287 182634529 -60029824 + L1M4 LINE L1 6235 6476 -513 4806 225 47 88 chr1 182634534 182634726 -60029627 - L1MCa LINE L1 -1835 4591 4393 1938 120 3 11 chr1 182634726 182635009 -60029344 - AluSq SINE Alu -28 285 5 1385 192 62 0 chr1 182635016 182635292 -60029061 - AluJb SINE Alu -19 293 1 4806 225 47 88 chr1 182635292 182636409 -60027944 - L1MCa LINE L1 -2039 4387 3225 273 95 0 0 chr1 182636409 182636451 -60027902 - MADE1 DNA Mariner -38 42 1 4806 225 47 88 chr1 182636451 182636626 -60027727 - L1MCa LINE L1 -3201 3225 3044 3677 35 9 4 chr1 182636626 182637089 -60027264 + L1PA4 LINE L1 5691 6155 0 4806 225 47 88 chr1 182637089 182638337 -60026016 - L1MCa LINE L1 -3382 3044 1945 2237 97 7 0 chr1 182638337 182638647 -60025706 + AluSx SINE Alu 1 312 0 4806 225 47 88 chr1 182638647 182638892 -60025461 - L1MCa LINE L1 -4481 1945 1691 282 268 18 36 chr1 182638976 182639088 -60025265 + MLT1A1 LTR MaLR 144 253 -112 849 10 0 0 chr1 182639088 182639187 -60025166 + L1PA4 LINE L1 6054 6152 -3 438 288 47 0 chr1 182639197 182639367 -60024986 - L1MCa LINE L1 -6055 552 375 1811 140 7 7 chr1 182639541 182639853 -60024500 + AluSx SINE Alu 1 312 0 632 310 37 20 chr1 182639882 182640234 -60024119 + L1MB8 LINE L1 3442 3799 -2347 446 283 54 24 chr1 182641248 182641430 -60022923 + MLT1H LTR MaLR 2 234 -315 2092 160 27 3 chr1 182641430 182641805 -60022548 - L1PA16 LINE L1 -1 6165 5782 237 192 0 0 chr1 182641830 182641882 -60022471 - L1MC4 LINE L1 -1339 6703 6652 233 263 0 53 chr1 182641886 182641981 -60022372 - L1MC4 LINE L1 -1339 6703 6614 236 283 0 0 chr1 182641985 182642038 -60022315 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 278 214 95 0 chr1 182642038 182642122 -60022231 - L1MC4 LINE L1 -1337 6705 6614 243 286 0 11 chr1 182642112 182642203 -60022150 + L1MC4 LINE L1 6614 6703 -1339 * 216 274 0 0 chr1 182642203 182642254 -60022099 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 526 297 108 21 chr1 182642254 182642678 -60021675 + L1MB8 LINE L1 3883 4343 -1803 22 35 0 0 chr1 182644111 182644140 -60020213 + AT_rich Low_complexity Low_complexity 1 29 0 377 268 39 0 chr1 182644219 182644346 -60020007 + L1MB8 LINE L1 4729 4860 -1286 2035 178 49 10 chr1 182644367 182644777 -60019576 - L1MA6 LINE L1 -22 7697 7272 * 7329 214 68 13 chr1 182644775 182647080 -60017273 - L1MA6 LINE L1 -2006 5559 3123 308 270 0 0 chr1 182647078 182647152 -60017201 + L1MB8 LINE L1 5506 5579 -605 * 4545 92 9 0 chr1 182647155 182647784 -60016569 - L1P LINE L1 -1444 4702 4068 * 4775 81 17 4 chr1 182647773 182648539 -60015814 + L1PA7 LINE L1 5229 6153 -1 1367 223 128 60 chr1 182648545 182649100 -60015253 + L1MB8 LINE L1 5584 6176 -2 210 71 0 0 chr1 182649171 182649199 -60015154 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 812 276 55 11 chr1 182649691 182650162 -60014191 - MLT1F LTR MaLR -18 524 3 417 121 0 0 chr1 182650171 182650254 -60014099 + (TATG)n Simple_repeat Simple_repeat 2 84 0 28 48 0 0 chr1 182650572 182650614 -60013739 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr1 182651329 182651359 -60012994 + AT_rich Low_complexity Low_complexity 1 30 0 6360 201 32 6 chr1 182651478 182652274 -60012079 - L1 LINE L1 -1353 4793 3939 7449 32 0 1 chr1 182652274 182653756 -60010597 + L1PA4 LINE L1 4673 6154 -1 6360 201 32 6 chr1 182653756 182654403 -60009950 - L1 LINE L1 -2207 3939 3311 1446 136 68 25 chr1 182654403 182654682 -60009671 - THE1C LTR MaLR 0 375 85 1093 274 78 5 chr1 182654682 182655080 -60009273 - L1 LINE L1 -3120 3026 2600 2246 218 54 32 chr1 182655082 182655615 -60008738 + MLT2B3 LTR ERVL 2 546 -8 1051 196 59 0 chr1 182655647 182655866 -60008487 + L1MA7 LINE L1 5683 5914 -377 2206 151 30 16 chr1 182655996 182656426 -60007927 + L1MA7 LINE L1 5856 6291 0 29 70 0 0 chr1 182656461 182656518 -60007835 + AT_rich Low_complexity Low_complexity 1 57 0 676 263 79 17 chr1 182656546 182656786 -60007567 - LTR52 LTR ERVL -151 270 16 186 326 0 0 chr1 182656894 182656937 -60007416 + MIR SINE MIR 59 101 -161 365 151 0 27 chr1 182657128 182657201 -60007152 + LTR52 LTR ERVL 15 85 -336 228 259 17 17 chr1 182657318 182657376 -60006977 - MIR SINE MIR -131 77 20 217 296 296 8 chr1 182657816 182657941 -60006412 + MIR SINE MIR 59 219 -43 455 318 57 17 chr1 182658946 182659122 -60005231 - MIR SINE MIR -34 228 46 3661 19 12 0 chr1 182659441 182659868 -60004485 - L1PA3 LINE L1 0 6155 5724 222 128 0 0 chr1 182660113 182660152 -60004201 + (A)n Simple_repeat Simple_repeat 1 39 0 4215 61 29 2 chr1 182660663 182661221 -60003132 - L1PA7 LINE L1 -1 6153 5581 1144 102 0 0 chr1 182661222 182661388 -60002965 + L1P LINE L1 5068 5233 -913 223 320 67 13 chr1 182661412 182661487 -60002866 + L2 LINE L2 3227 3305 -8 7807 18 0 0 chr1 182661523 182662425 -60001928 - L1PA2 LINE L1 0 6155 5254 7748 16 0 0 chr1 182661536 182662519 -60001834 - L1PA2 LINE L1 -13 6142 5160 646 248 82 45 chr1 182663067 182663427 -60000926 - L1MC4 LINE L1 -1206 6602 6257 3681 141 25 59 chr1 182663427 182663681 -60000672 - L1PA13 LINE L1 -1 6162 5901 234 0 0 0 chr1 182663681 182663707 -60000646 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3681 141 25 59 chr1 182663707 182664169 -60000184 - L1PA13 LINE L1 -262 5901 5470 646 248 82 45 chr1 182664169 182664633 -59999720 - L1MC4 LINE L1 -1551 6257 5799 710 194 80 6 chr1 182664636 182664811 -59999542 + L1MC4a LINE L1 7534 7721 -87 194 304 147 51 chr1 182664827 182664907 -59999446 + L2 LINE L2 2136 2207 -1107 281 26 26 0 chr1 182664907 182664945 -59999408 + (CA)n Simple_repeat Simple_repeat 1 39 0 200 59 29 0 chr1 182664945 182664979 -59999374 + (TA)n Simple_repeat Simple_repeat 1 35 0 194 304 147 51 chr1 182664979 182665209 -59999144 + L2 LINE L2 2206 2477 -837 1845 76 0 8 chr1 182666579 182666830 -59997523 + L1PA7 LINE L1 5905 6153 -1 264 239 72 29 chr1 182666894 182667032 -59997321 + L1ME LINE L1 5288 5431 -731 22 0 0 0 chr1 182667128 182667150 -59997203 + AT_rich Low_complexity Low_complexity 1 22 0 7768 17 0 0 chr1 182667150 182668144 -59996209 - L1PA2 LINE L1 -2 6153 5160 638 264 57 26 chr1 182668691 182669060 -59995293 - L1MC4 LINE L1 -1206 6602 6276 531 188 159 0 chr1 182669051 182669259 -59995094 - L1PA13 LINE L1 0 6163 5923 * 273 275 0 0 chr1 182669403 182669472 -59994881 + L2 LINE L2 2059 2127 -1187 425 304 80 31 chr1 182669590 182670417 -59993936 + L1M4 LINE L1 4557 5427 -737 1758 183 31 0 chr1 182670477 182670827 -59993526 + L1PB4 LINE L1 5783 6143 -13 12206 172 31 13 chr1 182672636 182676300 -59988053 + L1MA1 LINE L1 2574 6302 0 21 0 0 0 chr1 182676556 182676577 -59987776 + AT_rich Low_complexity Low_complexity 1 21 0 322 246 109 27 chr1 182676610 182676720 -59987633 + MLT1E1 LTR MaLR 11 129 -525 628 238 23 90 chr1 182676762 182677061 -59987292 + MLT1E1 LTR MaLR 374 652 -2 7185 52 1 1 chr1 182678265 182679322 -59985031 + L1PA5 LINE L1 5096 6152 -2 520 184 10 0 chr1 182679450 182679553 -59984800 - L1MC3 LINE L1 -204 7581 7478 22 56 0 0 chr1 182679937 182679973 -59984380 + AT_rich Low_complexity Low_complexity 1 36 0 227 340 35 0 chr1 182680151 182680295 -59984058 + MER103 DNA DNA 18 166 0 227 54 27 0 chr1 182680892 182680929 -59983424 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr1 182681308 182681329 -59983024 + AT_rich Low_complexity Low_complexity 1 21 0 256 259 157 30 chr1 182681641 182681807 -59982546 + MIR SINE MIR 76 262 0 22 35 0 0 chr1 182681807 182681836 -59982517 + AT_rich Low_complexity Low_complexity 1 29 0 2143 193 74 43 chr1 182682006 182682585 -59981768 + MER7C DNA MER2_type 2 598 -4 346 272 56 25 chr1 182682828 182682990 -59981363 - L1MC5 LINE L1 -465 7496 7330 874 217 5 30 chr1 182682996 182683199 -59981154 - MER3 DNA MER1_type -6 203 6 574 240 44 115 chr1 182683204 182683724 -59980629 - L1MC5 LINE L1 -624 7337 6855 36 56 0 33 chr1 182684081 182684171 -59980182 + AT_rich Low_complexity Low_complexity 1 87 0 1939 120 46 23 chr1 182685649 182685947 -59978406 + L1MA2 LINE L1 5947 6256 -48 2084 114 3 3 chr1 182685947 182686244 -59978109 + AluY SINE Alu 1 297 -14 1939 120 46 23 chr1 182686244 182686295 -59978058 + L1MA2 LINE L1 6256 6304 0 21 0 0 0 chr1 182686295 182686316 -59978037 + AT_rich Low_complexity Low_complexity 1 21 0 1592 171 89 38 chr1 182686675 182687044 -59977309 + MLT1B LTR MaLR 3 390 0 1931 156 3 0 chr1 182687441 182687748 -59976605 + AluSx SINE Alu 3 310 -2 1904 77 4 4 chr1 182688816 182689105 -59975248 + AluY SINE Alu 33 321 0 1237 267 87 33 chr1 182689108 182689879 -59974474 + L1ME2 LINE L1 4785 5609 -555 1789 68 8 0 chr1 182690036 182690271 -59974082 - AluY SINE Alu -3 308 72 865 193 57 26 chr1 182690489 182690717 -59973636 - L1MA9 LINE L1 0 6312 6078 957 248 126 45 chr1 182691014 182691458 -59972895 + L1ME2 LINE L1 5676 6155 -9 407 256 0 0 chr1 182692866 182692952 -59971401 + MLT1K LTR MaLR 161 246 -342 23 33 0 0 chr1 182693322 182693352 -59971001 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 182693685 182693714 -59970639 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr1 182693880 182693906 -59970447 + AT_rich Low_complexity Low_complexity 1 26 0 424 247 0 0 chr1 182696502 182696595 -59967758 + L1M4 LINE L1 4708 4800 -1346 323 167 15 0 chr1 182696598 182696664 -59967689 + (TA)n Simple_repeat Simple_repeat 2 68 0 253 299 23 0 chr1 182696745 182696832 -59967521 + L1MC4 LINE L1 6614 6702 -1340 249 264 23 23 chr1 182696762 182696849 -59967504 - L1MC4 LINE L1 -1342 6700 6614 * 242 266 0 43 chr1 182696841 182696935 -59967418 + L1MC4 LINE L1 6614 6703 -1339 * 234 238 113 0 chr1 182696907 182696987 -59967366 - L1MC4 LINE L1 -1339 6703 6615 * 1119 253 79 5 chr1 182697032 182697399 -59966954 + L1M4 LINE L1 4793 5186 -960 761 166 131 0 chr1 182697402 182697589 -59966764 + AluSg/x SINE Alu 121 326 0 341 220 20 10 chr1 182697595 182697695 -59966658 + L1M4 LINE L1 5192 5292 -854 1519 215 91 107 chr1 182697856 182698419 -59965934 + MLT2B3 LTR ERVL 1 554 0 512 194 20 0 chr1 182698789 182698887 -59965466 + HY3 scRNA scRNA 1 100 -1 184 315 82 0 chr1 182698939 182699012 -59965341 + L3 LINE CR1 417 495 -1082 5253 88 98 0 chr1 182699208 182699960 -59964393 + LTR12 LTR ERV1 1 826 0 21 36 0 0 chr1 182700439 182700467 -59963886 + AT_rich Low_complexity Low_complexity 1 28 0 292 318 31 8 chr1 182700737 182700866 -59963487 + MLT1H LTR MaLR 80 211 -338 247 282 59 0 chr1 182701110 182701195 -59963158 - L2 LINE L2 0 3313 3224 23 0 0 0 chr1 182701407 182701430 -59962923 + AT_rich Low_complexity Low_complexity 1 23 0 21 80 0 0 chr1 182701596 182701621 -59962732 + AT_rich Low_complexity Low_complexity 1 25 0 188 348 51 25 chr1 182702566 182702724 -59961629 - L2 LINE L2 -557 2757 2596 27 29 0 0 chr1 182703527 182703561 -59960792 + AT_rich Low_complexity Low_complexity 1 34 0 1864 144 0 7 chr1 182703876 182704160 -59960193 - AluSx SINE Alu -4 308 27 225 362 81 23 chr1 182704717 182704891 -59959462 - MIR SINE MIR -38 224 41 239 180 33 49 chr1 182705171 182705232 -59959121 + L1MEd LINE L1 86 145 -5974 32 111 0 0 chr1 182705770 182705914 -59958439 + AT_rich Low_complexity Low_complexity 1 144 0 308 254 146 0 chr1 182705926 182706036 -59958317 + L1MEd LINE L1 2350 2475 -3654 2182 82 29 0 chr1 182706566 182706872 -59957481 + L1PA7 LINE L1 5840 6154 0 7490 34 0 0 chr1 182707342 182708276 -59956077 - L1PA4 LINE L1 -1 6154 5221 295 247 10 72 chr1 182708397 182708494 -59955859 - Tigger5 DNA MER2_type 0 2323 2233 1477 227 36 54 chr1 182708701 182709223 -59955130 + L1PB4 LINE L1 5668 6145 -11 189 175 0 0 chr1 182709295 182709335 -59955018 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 608 226 49 53 chr1 182709632 182709858 -59954495 - L1M4 LINE L1 -2085 4061 3837 1603 286 86 37 chr1 182709870 182709881 -59954472 + L1MEc LINE L1 852 861 -5354 1381 181 0 19 chr1 182709881 182710147 -59954206 + L1PB4 LINE L1 5890 6150 -6 1603 286 86 37 chr1 182710147 182711788 -59952565 + L1MEc LINE L1 861 2567 -3648 1638 279 106 25 chr1 182711790 182712846 -59951507 + L1MEc LINE L1 2643 3784 -2431 288 70 0 0 chr1 182713146 182713189 -59951164 + (TG)n Simple_repeat Simple_repeat 2 44 0 1393 203 130 52 chr1 182713196 182713596 -59950757 + MLT1D LTR MaLR 73 503 -2 27 0 0 0 chr1 182713826 182713853 -59950500 + AT_rich Low_complexity Low_complexity 1 27 0 401 133 41 0 chr1 182714270 182714368 -59949985 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 195 351 14 0 chr1 182714550 182714624 -59949729 - L2 LINE L2 -4 3268 3194 7267 216 47 15 chr1 182716042 182718695 -59945658 - L1PB3 LINE L1 -2 6152 3414 848 273 16 55 chr1 182718706 182719017 -59945336 + MER58B DNA MER1_type 42 340 -1 22 0 0 0 chr1 182719290 182719312 -59945041 + AT_rich Low_complexity Low_complexity 1 22 0 345 294 34 34 chr1 182719938 182720084 -59944269 - MIR SINE MIR -46 216 71 367 220 23 19 chr1 182720167 182720299 -59944054 - L1MC4 LINE L1 -1337 6985 1995 2140 125 0 7 chr1 182720414 182720717 -59943636 + AluSx SINE Alu 1 301 -11 39 50 0 0 chr1 182720855 182720915 -59943438 + AT_rich Low_complexity Low_complexity 1 60 0 23 68 0 0 chr1 182720961 182721005 -59943348 + AT_rich Low_complexity Low_complexity 1 44 0 359 162 14 40 chr1 182721802 182721876 -59942477 + MER112 DNA MER1_type 1 72 -188 216 269 0 0 chr1 182721963 182722015 -59942338 + (CTATT)n Simple_repeat Simple_repeat 3 54 0 31 68 0 0 chr1 182722946 182723005 -59941348 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr1 182723181 182723211 -59941142 + AT_rich Low_complexity Low_complexity 1 30 0 300 269 41 25 chr1 182723294 182723491 -59940862 - L1MCb LINE L1 -3546 3018 2819 344 85 0 0 chr1 182723492 182723539 -59940814 + MADE1 DNA Mariner 1 47 -33 1575 259 114 37 chr1 182723558 182724565 -59939788 - L1MCb LINE L1 -3941 2804 1876 1320 210 43 58 chr1 182724565 182724960 -59939393 + MLT1B LTR MaLR 2 390 0 1575 259 114 37 chr1 182724960 182725893 -59938460 - L1MCb LINE L1 -4869 1876 572 1328 216 54 0 chr1 182725894 182726190 -59938163 + L1MC1 LINE L1 6020 6331 -2 1072 277 78 58 chr1 182726313 182726865 -59937488 - L1MCb LINE L1 -5480 565 3 23 54 0 0 chr1 182726922 182726959 -59937394 + AT_rich Low_complexity Low_complexity 1 37 0 585 318 66 47 chr1 182727696 182728077 -59936276 + L2 LINE L2 2876 3263 -50 183 186 0 0 chr1 182729124 182729167 -59935186 + A-rich Low_complexity Low_complexity 1 43 0 5849 154 30 43 chr1 182730506 182731680 -59932673 - Tigger3b DNA MER2_type 0 1231 73 420 220 33 0 chr1 182731732 182731823 -59932530 - Tigger3b DNA MER2_type -1137 94 1 1540 201 48 28 chr1 182732529 182732883 -59931470 + MLT1A1 LTR MaLR 1 361 -4 257 369 64 64 chr1 182733487 182733723 -59930630 + L2 LINE L2 3029 3264 -8 1605 173 31 7 chr1 182734686 182734975 -59929378 + AluJb SINE Alu 1 296 -16 4091 201 48 92 chr1 182735018 182735653 -59928700 + L1MA10 LINE L1 4801 5463 -871 1981 126 4 0 chr1 182735653 182735930 -59928423 + AluSp SINE Alu 1 278 -35 450 0 0 0 chr1 182735936 182735986 -59928367 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2148 114 0 0 chr1 182735989 182736295 -59928058 + AluSg1 SINE Alu 1 306 -3 4091 201 48 92 chr1 182736295 182737252 -59927101 + L1MA10 LINE L1 5470 6318 -16 61 0 0 0 chr1 182738226 182738287 -59926066 + AT_rich Low_complexity Low_complexity 1 61 0 268 95 48 29 chr1 182738287 182738392 -59925961 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 30 0 0 0 chr1 182738392 182738422 -59925931 + AT_rich Low_complexity Low_complexity 1 30 0 3886 189 27 33 chr1 182738644 182739527 -59924826 - L1MB1 LINE L1 -1 6167 5290 1808 230 34 15 chr1 182739577 182740055 -59924298 + L1 LINE L1 4755 5241 -905 2235 98 7 0 chr1 182741347 182741652 -59922701 - AluSp SINE Alu -6 307 1 1306 238 59 53 chr1 182742139 182742651 -59921702 - L1ME2 LINE L1 0 6164 5650 292 368 75 21 chr1 182742672 182742911 -59921442 + L3 LINE CR1 1315 1566 -11 453 376 75 18 chr1 182744792 182745074 -59919279 - L2 LINE L2 -533 2781 2484 222 191 0 0 chr1 182745878 182745925 -59918428 + (CA)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr1 182745968 182746021 -59918332 + AT_rich Low_complexity Low_complexity 1 53 0 6031 85 50 0 chr1 182746046 182747021 -59917332 - L1PA7 LINE L1 -2 6152 5152 4202 109 2 9 chr1 182747024 182747664 -59916689 - L1PA7 LINE L1 -1057 5089 4455 1074 228 74 105 chr1 182747749 182748197 -59916156 - MLT1H LTR MaLR -33 516 83 2512 67 0 3 chr1 182748297 182748609 -59915744 + AluY SINE Alu 1 311 0 1851 150 142 18 chr1 182748915 182749295 -59915058 - MSTA LTR MaLR -1 427 1 6022 150 13 20 chr1 182749295 182750316 -59914037 - MSTA-int LTR MaLR 0 1580 567 2045 203 12 31 chr1 182750318 182750621 -59913732 + MLT2B1 LTR ERVL 105 399 -121 2089 128 0 7 chr1 182750621 182750917 -59913436 - AluSg SINE Alu -16 294 1 2045 203 12 31 chr1 182750917 182751037 -59913316 + MLT2B1 LTR ERVL 399 520 0 454 317 93 30 chr1 182751062 182751466 -59912887 + MLT1H LTR MaLR 79 547 -8 944 311 70 59 chr1 182752351 182752895 -59911458 + MLT2F LTR ERVL 106 655 -8 548 323 59 0 chr1 182752904 182753090 -59911263 + MIR SINE MIR 3 199 -63 300 188 78 16 chr1 182753381 182753445 -59910908 + L2 LINE L2 3205 3272 0 1294 209 39 29 chr1 182754199 182754506 -59909847 - MLT1A1 LTR MaLR 0 365 56 732 282 120 21 chr1 182754648 182755367 -59908986 - L1MDb LINE L1 -2407 3999 3210 664 79 0 30 chr1 182755367 182755468 -59908885 - L1PA8 LINE L1 0 6172 6075 26 0 0 0 chr1 182755557 182755583 -59908770 + AT_rich Low_complexity Low_complexity 1 26 0 5859 67 17 4 chr1 182755583 182756392 -59907961 - L1PA8 LINE L1 -121 6051 5231 909 253 37 17 chr1 182756383 182756735 -59907618 - L1MDb LINE L1 -3184 3222 2864 * 1895 308 136 6 chr1 182756729 182757551 -59906802 - L1MDb LINE L1 -5472 937 9 245 311 27 0 chr1 182759073 182759147 -59905206 + MIR SINE MIR 168 243 -19 259 325 66 25 chr1 182759276 182759519 -59904834 + L1ME LINE L1 5602 5854 -267 1993 150 51 20 chr1 182759652 182760005 -59904348 + THE1B LTR MaLR 1 364 0 1556 146 37 30 chr1 182760516 182760811 -59903542 + AluJo SINE Alu 6 302 -10 707 249 73 12 chr1 182760892 182761137 -59903216 + L1MA10 LINE L1 6046 6305 -29 28 0 0 0 chr1 182761744 182761772 -59902581 + AT_rich Low_complexity Low_complexity 1 28 0 440 267 50 0 chr1 182762498 182762659 -59901694 + L1M4 LINE L1 2234 2402 -3744 563 294 85 48 chr1 182762681 182763198 -59901155 - L1M4 LINE L1 -1279 4867 4296 24 32 0 0 chr1 182763198 182763229 -59901124 + AT_rich Low_complexity Low_complexity 1 31 0 563 294 85 48 chr1 182763229 182763260 -59901093 - L1M4 LINE L1 -1850 4296 4268 466 312 77 27 chr1 182763296 182763774 -59900579 - L1M4 LINE L1 -1992 4154 3653 584 342 110 11 chr1 182763786 182764230 -59900123 - L2 LINE L2 -954 2360 1873 246 262 24 12 chr1 182764323 182764407 -59899946 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 1350 137 137 15 chr1 182764581 182764844 -59899509 - L1PA16 LINE L1 0 6166 5872 8326 240 49 21 chr1 182764846 182767968 -59896385 - L1MC2 LINE L1 -16 6608 3365 2031 123 23 0 chr1 182767968 182768268 -59896085 - AluSg1 SINE Alu -2 307 1 8326 240 49 21 chr1 182768268 182768923 -59895430 - L1MC2 LINE L1 -3259 3365 2730 1284 253 7 10 chr1 182768958 182769262 -59895091 - MLT1A1 LTR MaLR -18 347 45 8829 203 109 32 chr1 182769262 182771707 -59892646 - L1MC2 LINE L1 -3925 2682 6 1270 184 31 8 chr1 182771693 182771954 -59892399 - L1MC1 LINE L1 -506 5827 5561 * 351 98 49 0 chr1 182771957 182772018 -59892335 - L1MC1 LINE L1 -844 5489 5426 26 50 0 0 chr1 182772078 182772118 -59892235 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr1 182772556 182772578 -59891775 + AT_rich Low_complexity Low_complexity 1 22 0 31 68 0 0 chr1 182773197 182773256 -59891097 + AT_rich Low_complexity Low_complexity 1 59 0 191 196 17 23 chr1 182773272 182773445 -59890908 + (TA)n Simple_repeat Simple_repeat 1 172 0 390 189 59 6 chr1 182773473 182773642 -59890711 + (TA)n Simple_repeat Simple_repeat 1 178 0 30 0 0 0 chr1 182773795 182773825 -59890528 + AT_rich Low_complexity Low_complexity 1 30 0 2100 205 27 2 chr1 182773825 182774268 -59890085 - L1MA5 LINE L1 -255 6045 5592 27337 25 4 2 chr1 182774273 182778355 -59885998 - L1PA2 LINE L1 0 6155 2065 4859 36 0 0 chr1 182778354 182778941 -59885412 + L1PA2 LINE L1 1485 2071 -4075 * 1070 156 47 0 chr1 182778943 182779155 -59885198 - L1MA5 LINE L1 -697 5603 5382 25 0 0 0 chr1 182779334 182779359 -59884994 + AT_rich Low_complexity Low_complexity 1 25 0 29 104 0 0 chr1 182779806 182779912 -59884441 + AT_rich Low_complexity Low_complexity 1 106 0 780 258 107 79 chr1 182781789 182782255 -59882098 - L2 LINE L2 -1 3312 2834 642 249 155 48 chr1 182782295 182782604 -59881749 + L2 LINE L2 1749 2090 -1224 296 271 40 16 chr1 182782711 182782853 -59881500 + L1ME1 LINE L1 6004 6153 -13 50 83 0 0 chr1 182782967 182783087 -59881266 + AT_rich Low_complexity Low_complexity 1 120 0 439 255 79 49 chr1 182783119 182783345 -59881008 + L1ME LINE L1 5353 5587 -575 24 0 0 0 chr1 182784799 182784823 -59879530 + AT_rich Low_complexity Low_complexity 1 24 0 380 332 43 24 chr1 182784954 182785162 -59879191 + MIR SINE MIR 51 262 0 2170 109 0 0 chr1 182785181 182785464 -59878889 - AluSq SINE Alu -30 283 1 29 84 0 0 chr1 182785466 182785537 -59878816 + AT_rich Low_complexity Low_complexity 1 71 0 23 33 0 0 chr1 182785698 182785728 -59878625 + AT_rich Low_complexity Low_complexity 1 30 0 210 187 11 0 chr1 182786446 182786504 -59877849 + A-rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr1 182786586 182786621 -59877732 + AT_rich Low_complexity Low_complexity 1 35 0 654 165 0 0 chr1 182787116 182787243 -59877110 + CT-rich Low_complexity Low_complexity 2 128 0 297 296 35 35 chr1 182788035 182788177 -59876176 - L1ME3A LINE L1 -9 6161 6020 2218 147 8 23 chr1 182788590 182788985 -59875368 - MLT1B LTR MaLR 0 390 2 21 36 0 0 chr1 182788987 182789015 -59875338 + AT_rich Low_complexity Low_complexity 1 28 0 1755 113 15 4 chr1 182789945 182790211 -59874142 + L1PA13 LINE L1 5891 6159 -4 677 331 80 26 chr1 182790316 182790493 -59873860 - Charlie8 DNA MER1_type -1201 1216 1050 201 74 0 0 chr1 182790493 182790520 -59873833 + (CA)n Simple_repeat Simple_repeat 1 27 0 677 331 80 26 chr1 182790520 182790983 -59873370 - Charlie8 DNA MER1_type -1367 1050 542 21 36 0 0 chr1 182791068 182791096 -59873257 + AT_rich Low_complexity Low_complexity 1 28 0 241 340 54 16 chr1 182791468 182791653 -59872700 - Charlie8 DNA MER1_type -1858 559 368 433 196 0 43 chr1 182791721 182791813 -59872540 - LTR41 LTR ERVL -2 771 684 42 82 0 0 chr1 182792769 182792867 -59871486 + AT_rich Low_complexity Low_complexity 1 98 0 21 0 0 0 chr1 182793081 182793102 -59871251 + AT_rich Low_complexity Low_complexity 1 21 0 301 331 143 7 chr1 182793207 182793361 -59870992 - HAL1 LINE L1 -114 2393 2219 800 203 221 39 chr1 182794142 182794300 -59870053 + MLT1B LTR MaLR 1 129 -261 213 39 0 0 chr1 182794300 182794326 -59870027 + (TC)n Simple_repeat Simple_repeat 2 27 0 800 203 221 39 chr1 182794326 182794497 -59869856 + MLT1B LTR MaLR 129 390 0 2116 110 3 10 chr1 182795067 182795367 -59868986 - AluSx SINE Alu -12 300 3 1728 292 31 55 chr1 182795371 182796558 -59867795 - L1M4 LINE L1 -2139 4007 2849 11582 175 34 21 chr1 182796611 182800121 -59864232 - L1MA3 LINE L1 0 6509 2950 25 51 0 0 chr1 182800761 182800800 -59863553 + AT_rich Low_complexity Low_complexity 1 39 0 26 88 0 0 chr1 182800944 182801012 -59863341 + AT_rich Low_complexity Low_complexity 1 68 0 724 188 8 115 chr1 182801012 182801273 -59863080 + L1M4 LINE L1 4812 5044 -1102 28 29 0 0 chr1 182802139 182802174 -59862179 + AT_rich Low_complexity Low_complexity 1 35 0 5281 125 23 4 chr1 182802265 182803736 -59860617 - L1PA13 LINE L1 0 6814 5295 5579 29 16 0 chr1 182803751 182804418 -59859935 - L1PA3 LINE L1 -1 6154 5477 13073 211 46 49 chr1 182804440 182809650 -59854703 - L1PA13 LINE L1 -1491 5306 33 1349 308 36 107 chr1 182811263 182812554 -59851799 - L1MA3 LINE L1 -4910 1371 173 279 86 0 0 chr1 182813841 182813876 -59850477 + Alu SINE Alu 16 50 -250 1941 27 0 0 chr1 182814349 182814574 -59849779 - L1PA2 LINE L1 -372 5783 5559 3352 16 0 0 chr1 182814574 182814956 -59849397 + L1PA2 LINE L1 5766 6153 -2 22 0 0 0 chr1 182814956 182814978 -59849375 + AT_rich Low_complexity Low_complexity 1 22 0 1374 148 3 82 chr1 182815909 182816212 -59848141 - L1MA4A LINE L1 -2 6301 6023 325 355 124 42 chr1 182816882 182817237 -59847116 + HAL1 LINE L1 1492 1875 -632 1731 193 0 17 chr1 182817430 182817725 -59846628 - AluJb SINE Alu -20 292 3 1373 242 93 29 chr1 182818262 182818581 -59845772 - L1ME LINE L1 -476 5690 5393 348 24 0 0 chr1 182818581 182818622 -59845731 + (CA)n Simple_repeat Simple_repeat 1 41 0 1373 242 93 29 chr1 182818622 182819047 -59845306 - L1ME LINE L1 -773 5393 4907 254 265 15 0 chr1 182819080 182819148 -59845205 + LTR67 LTR ERVL 487 555 -2 223 354 98 12 chr1 182819163 182819327 -59845026 - L2 LINE L2 -459 2855 2678 219 246 0 15 chr1 182819848 182819913 -59844440 + GA-rich Low_complexity Low_complexity 1 64 0 5705 133 18 5 chr1 182821412 182821424 -59842929 - L1PA15 LINE L1 -3 6162 6152 239 0 32 0 chr1 182821424 182821455 -59842898 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5705 133 18 5 chr1 182821455 182822390 -59841963 - L1PA15 LINE L1 -13 6152 5204 344 326 38 23 chr1 182822472 182822604 -59841749 - MLT2E LTR ERVL -456 172 39 238 264 60 18 chr1 182823892 182824059 -59840294 + (CTATA)n Simple_repeat Simple_repeat 2 175 0 * 392 230 33 13 chr1 182823936 182824088 -59840265 + (TTATA)n Simple_repeat Simple_repeat 5 159 0 1609 234 33 64 chr1 182825132 182825217 -59839136 - MLT1C LTR MaLR 0 467 381 3477 184 22 42 chr1 182825217 182826018 -59838335 + LTR1 LTR ERV1 1 785 0 1609 234 33 64 chr1 182826018 182826414 -59837939 - MLT1C LTR MaLR -86 381 1 1612 187 154 10 chr1 182826949 182827351 -59837002 - MER74C LTR ERVL 0 460 1 477 329 34 8 chr1 182828410 182828647 -59835706 + HsTC2 DNA Tc2 3 245 -1653 341 324 36 22 chr1 182828647 182828786 -59835567 + HsTC2 DNA Tc2 1227 1543 -355 486 361 67 9 chr1 182829158 182829425 -59834928 - L2 LINE L2 -223 3090 2808 301 330 9 0 chr1 182829425 182829537 -59834816 - MER81 DNA DNA 0 114 2 486 361 67 9 chr1 182829537 182829557 -59834796 - L2 LINE L2 -505 2808 2791 434 304 275 4 chr1 182829572 182829848 -59834505 - L2 LINE L2 -840 2474 2124 2566 326 112 32 chr1 182829852 182831544 -59832809 - L2 LINE L2 -1405 1909 83 4887 162 6 11 chr1 182831817 182833542 -59830811 - L1PA16 LINE L1 -9 6860 5159 12026 203 28 15 chr1 182833550 182836598 -59827755 - L1PA16 LINE L1 -3067 3782 733 22 35 0 0 chr1 182837187 182837216 -59827137 + AT_rich Low_complexity Low_complexity 1 29 0 578 298 186 33 chr1 182837833 182838492 -59825861 - L2 LINE L2 -161 3152 2359 30 27 0 0 chr1 182838515 182838552 -59825801 + AT_rich Low_complexity Low_complexity 1 37 0 978 234 142 108 chr1 182838760 182839389 -59824964 - MLT1E1 LTR MaLR -4 650 1 226 322 0 17 chr1 182840743 182840802 -59823551 + L3 LINE CR1 1511 1568 -9 22 0 0 0 chr1 182840861 182840883 -59823470 + AT_rich Low_complexity Low_complexity 1 22 0 240 374 0 10 chr1 182841123 182841222 -59823131 - MIR3 SINE MIR -14 194 97 23 78 0 0 chr1 182841998 182842049 -59822304 + AT_rich Low_complexity Low_complexity 1 51 0 251 267 33 22 chr1 182842052 182842142 -59822211 + MIR SINE MIR 148 238 -24 586 296 98 15 chr1 182842885 182843088 -59821265 - MIR SINE MIR -38 224 5 1803 186 53 17 chr1 182843485 182843845 -59820508 - Ricksha DNA DNA -873 381 9 345 113 81 0 chr1 182843978 182844040 -59820313 + MLT2B3 LTR ERVL 28 94 -460 1952 190 32 9 chr1 182844051 182844762 -59819591 + Ricksha_b DNA DNA 525 1654 -13 2277 75 0 14 chr1 182846456 182846750 -59817603 - AluY SINE Alu -21 290 1 21 57 0 0 chr1 182847268 182847303 -59817050 + AT_rich Low_complexity Low_complexity 1 35 0 2114 69 0 21 chr1 182847680 182847862 -59816491 - AluY SINE Alu 0 311 136 423 0 0 0 chr1 182847862 182847909 -59816444 + (TA)n Simple_repeat Simple_repeat 1 47 0 2114 69 0 21 chr1 182847909 182848014 -59816339 - AluY SINE Alu -175 136 30 753 331 55 60 chr1 182848039 182848640 -59815713 + L2 LINE L2 1713 2310 -1004 215 135 39 19 chr1 182848645 182848697 -59815656 + (TA)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr1 182848921 182848944 -59815409 + AT_rich Low_complexity Low_complexity 1 23 0 1498 178 68 0 chr1 182850309 182850601 -59813752 + AluSx SINE Alu 1 312 0 26 50 0 0 chr1 182850983 182851023 -59813330 + AT_rich Low_complexity Low_complexity 1 40 0 344 343 71 40 chr1 182851785 182852109 -59812244 + MLT1K LTR MaLR 168 501 -87 1889 184 87 3 chr1 182852538 182852930 -59811423 + MSTB1 LTR MaLR 8 432 0 412 308 110 3 chr1 182854008 182854207 -59810146 + MIR SINE MIR 23 245 -17 43 64 0 0 chr1 182854357 182854435 -59809918 + AT_rich Low_complexity Low_complexity 1 78 0 2319 59 0 7 chr1 182854449 182854737 -59809616 + AluY SINE Alu 1 286 -25 1935 111 59 0 chr1 182854872 182855160 -59809193 + AluSq SINE Alu 1 305 -8 221 267 0 0 chr1 182855473 182855518 -59808835 + T-rich Low_complexity Low_complexity 1 45 0 887 221 0 0 chr1 182856542 182856705 -59807648 - FRAM SINE Alu -14 162 1 22 35 0 0 chr1 182856796 182856825 -59807528 + AT_rich Low_complexity Low_complexity 1 29 0 368 366 89 22 chr1 182857057 182857426 -59806927 + L2 LINE L2 2570 2963 -351 22 56 0 0 chr1 182857572 182857608 -59806745 + AT_rich Low_complexity Low_complexity 1 36 0 234 410 22 8 chr1 182857610 182857744 -59806609 + L2 LINE L2 3137 3272 0 299 293 149 16 chr1 182858184 182858372 -59805981 + MIR SINE MIR 45 257 -5 365 271 91 95 chr1 182858411 182858621 -59805732 - MLT1H1 LTR MaLR -290 265 75 463 279 53 25 chr1 182858741 182858919 -59805434 + MIR SINE MIR 74 257 -5 309 304 0 10 chr1 182858960 182859062 -59805291 + MIR SINE MIR 92 192 -70 216 67 0 0 chr1 182859160 182859190 -59805163 + (TAA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr1 182859456 182859480 -59804873 + AT_rich Low_complexity Low_complexity 1 24 0 909 196 33 0 chr1 182859697 182859911 -59804442 + L1MA4 LINE L1 6074 6294 -6 756 175 106 41 chr1 182860786 182861032 -59803321 - MER33 DNA MER1_type -23 301 40 409 350 85 37 chr1 182861046 182861340 -59803013 - L2 LINE L2 -420 2894 2587 1871 194 48 34 chr1 182861448 182861992 -59802361 - MLT2A2 LTR ERVL 0 554 3 23 0 0 0 chr1 182862191 182862214 -59802139 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 182862603 182862624 -59801729 + AT_rich Low_complexity Low_complexity 1 21 0 1331 246 108 45 chr1 182862738 182863164 -59801189 + MLT2B2 LTR ERVL 1 453 -62 227 172 35 35 chr1 182863172 182863230 -59801123 + L1MC4 LINE L1 6646 6703 -1339 313 156 0 3 chr1 182863271 182863329 -59801024 + MLT2B1 LTR ERVL 397 520 0 21 71 0 0 chr1 182864404 182864446 -59799907 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 182864825 182864854 -59799499 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 182865703 182865726 -59798627 + AT_rich Low_complexity Low_complexity 1 23 0 2070 117 33 0 chr1 182867036 182867335 -59797018 + AluSg SINE Alu 1 309 -1 1622 189 76 25 chr1 182867335 182867690 -59796663 - MSTD LTR MaLR -23 373 1 249 278 56 62 chr1 182868665 182868827 -59795526 + MLT1F-int LTR MaLR 1571 1731 -4 332 288 161 12 chr1 182868905 182869079 -59795274 + MLT1F LTR MaLR 66 258 -297 367 224 0 0 chr1 182869154 182869230 -59795123 + MLT1F LTR MaLR 275 350 -192 333 331 35 14 chr1 182869322 182869467 -59794886 + MLT1F LTR MaLR 443 590 0 183 409 11 0 chr1 182870072 182870160 -59794193 + MER5B DNA MER1_type 90 178 0 370 214 214 85 chr1 182871041 182871242 -59793111 + MLT1H LTR MaLR 298 524 -25 24 0 0 0 chr1 182871886 182871910 -59792443 + AT_rich Low_complexity Low_complexity 1 24 0 217 293 0 35 chr1 182871940 182871998 -59792355 - L2 LINE L2 -36 3236 3181 1227 146 9 18 chr1 182873065 182873291 -59791062 + L1MA5 LINE L1 4573 4796 -1350 * 4417 159 61 24 chr1 182873280 182874167 -59790186 + L1MA5 LINE L1 5374 6293 -7 2365 236 58 32 chr1 182874204 182874876 -59789477 - L1MC3 LINE L1 -51 7734 7081 3126 196 21 2 chr1 182874876 182875505 -59788848 - L1PB4 LINE L1 -7 6149 5509 2365 236 58 32 chr1 182875505 182878244 -59786109 - L1MC3 LINE L1 -704 7081 4112 243 0 0 0 chr1 182878245 182878272 -59786081 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 22 35 0 0 chr1 182878288 182878317 -59786036 + GC_rich Low_complexity Low_complexity 1 29 0 202 229 0 0 chr1 182878688 182878736 -59785617 + (TA)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr1 182878912 182878937 -59785416 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 182879674 182879695 -59784658 + AT_rich Low_complexity Low_complexity 1 21 0 2246 77 0 7 chr1 182879702 182880012 -59784341 - AluSx SINE Alu -4 308 1 262 374 48 0 chr1 182880481 182880628 -59783725 + L2 LINE L2 2901 3054 -218 537 92 0 0 chr1 182880766 182880842 -59783511 - MADE1 DNA Mariner -4 76 1 2550 198 82 10 chr1 182881606 182882183 -59782170 + L1MD1 LINE L1 5625 6242 0 1345 184 7 59 chr1 182882192 182882497 -59781856 + AluJb SINE Alu 1 289 -23 22 70 0 0 chr1 182882668 182882711 -59781642 + AT_rich Low_complexity Low_complexity 1 43 0 2670 7 0 0 chr1 182883363 182883653 -59780700 - AluYa5 SINE Alu -12 299 10 23 33 0 0 chr1 182884018 182884048 -59780305 + AT_rich Low_complexity Low_complexity 1 30 0 200 264 0 0 chr1 182884348 182884420 -59779933 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 2010 151 38 24 chr1 182885586 182885956 -59778397 + THE1C LTR MaLR 1 375 0 220 197 42 14 chr1 182887073 182887144 -59777209 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 227 309 25 0 chr1 182887155 182887236 -59777117 - MIR SINE MIR -112 150 68 49 87 0 0 chr1 182887412 182887538 -59776815 + AT_rich Low_complexity Low_complexity 1 126 0 25 77 0 13 chr1 182887780 182887800 -59776553 + AT_rich Low_complexity Low_complexity 1 20 -57 2176 44 84 0 chr1 182887800 182888074 -59776279 - AluY SINE Alu -14 297 1 25 77 0 13 chr1 182888074 182888131 -59776222 + AT_rich Low_complexity Low_complexity 20 77 0 250 358 37 43 chr1 182888140 182888302 -59776051 + MIR SINE MIR 1 161 -101 3985 177 45 37 chr1 182888623 182889255 -59775098 + L1PA16 LINE L1 4549 5175 -991 180 0 0 0 chr1 182889255 182889275 -59775078 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3985 177 45 37 chr1 182889275 182889437 -59774916 + L1PA16 LINE L1 5175 5334 -832 2311 100 7 3 chr1 182889437 182889746 -59774607 + AluSq SINE Alu 1 310 -3 249 33 0 0 chr1 182889746 182889776 -59774577 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 3985 177 45 37 chr1 182889776 182890563 -59773790 + L1PA16 LINE L1 5333 6163 -3 1216 283 32 40 chr1 182891290 182891784 -59772569 - L1ME3A LINE L1 -280 5890 5401 402 314 32 0 chr1 182892194 182892350 -59772003 - LTR65 LTR ERV1 -508 161 1 1420 295 91 33 chr1 182892396 182893015 -59771338 - L1ME3A LINE L1 -869 5277 4696 180 0 0 0 chr1 182893015 182893035 -59771318 + (CA)n Simple_repeat Simple_repeat 2 21 0 1420 295 91 33 chr1 182893035 182893697 -59770656 - L1ME3A LINE L1 -1450 4696 3921 730 275 42 35 chr1 182893844 182894248 -59770105 - L1ME1 LINE L1 -5 6161 5755 2059 178 8 0 chr1 182894284 182894666 -59769687 - L1PB4 LINE L1 -3 6153 5769 9367 216 28 20 chr1 182894667 182898063 -59766290 - L1PA16 LINE L1 -2 7602 4172 2152 190 26 21 chr1 182898066 182898492 -59765861 + MSTA LTR MaLR 1 428 0 8133 192 23 34 chr1 182898492 182898988 -59765365 + MSTA-int LTR MaLR 1 501 -1150 5551 120 14 9 chr1 182898988 182900663 -59763690 - L1PA13 LINE L1 -7 6156 4469 8133 192 23 34 chr1 182900663 182901835 -59762518 + MSTA-int LTR MaLR 501 1651 0 942 167 0 18 chr1 182901835 182901990 -59762363 + MSTA LTR MaLR 1 157 -271 2178 133 48 20 chr1 182901990 182902344 -59762009 - THE1B LTR MaLR 0 364 1 10820 116 7 2 chr1 182902344 182903917 -59760436 - THE1B-int LTR MaLR 0 1580 1 942 167 0 18 chr1 182903917 182903928 -59760425 + MSTA LTR MaLR 155 165 -263 * 1806 148 102 0 chr1 182903923 182904248 -59760105 - THE1B LTR MaLR -6 358 1 1567 188 11 0 chr1 182904248 182904524 -59759829 + MSTA LTR MaLR 150 428 0 4379 235 48 20 chr1 182904530 182906463 -59757890 - L1PA16 LINE L1 -3417 4167 2181 444 37 0 0 chr1 182906555 182906609 -59757744 + (TTG)n Simple_repeat Simple_repeat 1 54 0 451 358 47 7 chr1 182906997 182907293 -59757060 - L1PA16 LINE L1 -5847 1738 1431 310 300 77 41 chr1 182907356 182907526 -59756827 - L1PBa LINE L1 -5257 1606 1431 473 414 64 26 chr1 182907527 182907993 -59756360 - L1PBa LINE L1 -6351 512 29 1731 177 58 26 chr1 182908053 182908397 -59755956 - MLT1A1 LTR MaLR 0 365 11 754 262 54 0 chr1 182908407 182908667 -59755686 - L1M4 LINE L1 -442 5736 5460 * 1868 244 50 6 chr1 182908649 182909193 -59755160 + L1MB7 LINE L1 5617 6184 0 25 51 0 0 chr1 182909456 182909495 -59754858 + AT_rich Low_complexity Low_complexity 1 39 0 2292 147 84 38 chr1 182910459 182910961 -59753392 - L1MA9 LINE L1 -1 6311 5787 2081 122 3 0 chr1 182911046 182911342 -59753011 - AluSx SINE Alu -13 299 3 25 65 0 0 chr1 182912150 182912196 -59752157 + AT_rich Low_complexity Low_complexity 1 46 0 351 307 74 28 chr1 182912820 182912996 -59751357 + L1MC/D LINE L1 5301 5487 -2298 1098 231 149 0 chr1 182913775 182914138 -59750215 - LTR52 LTR ERVL -3 418 2 1735 159 0 70 chr1 182915790 182916117 -59748236 + AluSx SINE Alu 1 304 -8 188 274 55 0 chr1 182916367 182916440 -59747913 - MIR SINE MIR -119 143 67 21 0 0 0 chr1 182916919 182916940 -59747413 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr1 182917394 182917431 -59746922 + AT_rich Low_complexity Low_complexity 1 37 0 282 260 27 0 chr1 182917542 182917615 -59746738 + L1MC3 LINE L1 191 265 -5780 1344 210 54 72 chr1 182917677 182918068 -59746285 - MLT1B LTR MaLR 0 390 7 1455 246 25 45 chr1 182918069 182918388 -59745965 + L1MC3 LINE L1 3780 4087 -2477 1715 136 4 14 chr1 182918388 182918667 -59745686 - AluSx SINE Alu -8 304 29 1455 246 25 45 chr1 182918667 182918863 -59745490 + L1MC3 LINE L1 4087 4285 -2279 9263 230 38 39 chr1 182918876 182922583 -59741770 + L1MC3 LINE L1 4503 8188 -15 1133 317 24 31 chr1 182922592 182923089 -59741264 + L2 LINE L2 2778 3270 -43 1213 256 64 56 chr1 182924374 182924859 -59739494 - L1M4 LINE L1 -2304 3842 3347 2170 105 0 10 chr1 182924859 182925155 -59739198 - AluSg SINE Alu -17 293 1 1213 256 64 56 chr1 182925155 182925435 -59738918 - L1M4 LINE L1 -2799 3347 3071 457 301 67 40 chr1 182925921 182925970 -59738383 + L1M4 LINE L1 4383 4429 -1717 2131 109 0 3 chr1 182925970 182926283 -59738070 + AluSq SINE Alu 1 312 0 457 301 67 40 chr1 182926283 182926608 -59737745 + L1M4 LINE L1 4429 4768 -1378 3409 204 24 64 chr1 182926805 182927692 -59736661 + L1MA10 LINE L1 5481 6331 -3 415 65 16 0 chr1 182928290 182928352 -59736001 + L1PA2 LINE L1 6093 6155 0 207 0 0 0 chr1 182928446 182928469 -59735884 + (TTG)n Simple_repeat Simple_repeat 2 24 0 390 287 53 40 chr1 182930137 182930287 -59734066 + MIR SINE MIR 34 185 -77 227 301 117 0 chr1 182930557 182930660 -59733693 - MER110 LTR ERV1 0 491 377 835 19 28 0 chr1 182931128 182931236 -59733117 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 22 56 0 0 chr1 182932094 182932130 -59732223 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr1 182932197 182932235 -59732118 + AT_rich Low_complexity Low_complexity 1 38 0 349 312 65 72 chr1 182932542 182932941 -59731412 + HAL1b LINE L1 226 623 -725 195 42 0 0 chr1 182932941 182932965 -59731388 + (CA)n Simple_repeat Simple_repeat 1 24 0 349 312 65 72 chr1 182932965 182933026 -59731327 + HAL1b LINE L1 623 683 -665 26 0 0 0 chr1 182933139 182933165 -59731188 + AT_rich Low_complexity Low_complexity 1 26 0 2648 118 42 24 chr1 182934223 182934680 -59729673 - MER4C LTR ERV1 0 465 1 2717 20 0 0 chr1 182935277 182935580 -59728773 - AluYb8 SINE Alu -15 303 1 2068 127 0 0 chr1 182937276 182937567 -59726786 - AluSq SINE Alu -22 291 1 3169 208 49 1 chr1 182937587 182938281 -59726072 - L1MB3 LINE L1 -8 6175 5449 387 83 0 0 chr1 182938735 182938795 -59725558 + (TC)n Simple_repeat Simple_repeat 2 61 0 372 266 65 16 chr1 182940023 182940147 -59724206 + MLT1H LTR MaLR 81 210 -339 1694 200 44 3 chr1 182940420 182940787 -59723566 + MLT1B LTR MaLR 5 396 0 730 222 5 36 chr1 182940915 182941109 -59723244 - MER3 DNA MER1_type -16 193 6 3182 281 52 24 chr1 182941233 182943599 -59720754 + L1M3b LINE L1 761 2957 -4149 1178 286 65 17 chr1 182943623 182944110 -59720243 + L1M3b LINE L1 7 497 -6609 7576 214 49 15 chr1 182944115 182946233 -59718120 + L1M3b LINE L1 2941 5137 -1969 4805 175 68 23 chr1 182946248 182947275 -59717078 + Tigger3b DNA MER2_type 154 1226 -5 30 27 0 0 chr1 182947427 182947464 -59716889 + AT_rich Low_complexity Low_complexity 1 37 0 433 350 29 33 chr1 182949032 182949306 -59715047 + LTR16A LTR ERVL 82 354 -96 658 227 14 0 chr1 182949867 182950008 -59714345 - L1MA10 LINE L1 -15 6319 6177 343 240 41 16 chr1 182950017 182950138 -59714215 + LTR67 LTR ERVL 388 511 -46 784 396 85 19 chr1 182950769 182951354 -59712999 - L2 LINE L2 0 3313 2688 750 249 67 11 chr1 182951457 182951726 -59712627 - L1ME LINE L1 -622 5542 5259 229 274 97 8 chr1 182951789 182951913 -59712440 - L1ME LINE L1 -1081 5065 4931 695 277 121 16 chr1 182951952 182952400 -59711953 - L1ME LINE L1 -1200 4946 4452 23 0 0 0 chr1 182953217 182953240 -59711113 + AT_rich Low_complexity Low_complexity 1 23 0 2217 128 21 19 chr1 182953702 182954076 -59710277 - THE1C LTR MaLR 0 375 1 8820 151 55 11 chr1 182954076 182955590 -59708763 - THE1C-int LTR MaLR 0 1580 1 2335 130 8 16 chr1 182955590 182955968 -59708385 - THE1C LTR MaLR 0 375 1 225 371 0 0 chr1 182956113 182956183 -59708170 - MER5C DNA MER1_type -254 70 1 355 277 54 9 chr1 182956288 182956400 -59707953 + L2 LINE L2 3197 3313 0 608 219 9 0 chr1 182956530 182956644 -59707709 + FLAM_C SINE Alu 1 115 -18 3050 178 47 28 chr1 182956655 182957273 -59707080 - L1MCa LINE L1 -5777 649 20 2240 136 17 6 chr1 182957315 182957675 -59706678 + THE1B LTR MaLR 1 364 0 8762 141 30 67 chr1 182957676 182959315 -59705038 + THE1B-int LTR MaLR 2 1580 0 2098 132 87 3 chr1 182959317 182959651 -59704702 + THE1B LTR MaLR 3 364 0 403 198 10 0 chr1 182959765 182959866 -59704487 - L1MA8 LINE L1 0 6291 6190 465 293 65 52 chr1 182960217 182960449 -59703904 - MIR SINE MIR -16 246 12 26 64 0 0 chr1 182960495 182960542 -59703811 + AT_rich Low_complexity Low_complexity 1 47 0 5116 33 0 0 chr1 182960701 182961660 -59702693 - L1PA4 LINE L1 -428 5727 4769 3701 40 2 0 chr1 182961660 182962110 -59702243 + L1PA4 LINE L1 5703 6155 0 243 302 89 17 chr1 182962293 182962472 -59701881 + L1ME LINE L1 4902 5093 -1053 22 35 0 0 chr1 182962493 182962522 -59701831 + AT_rich Low_complexity Low_complexity 1 29 0 855 223 102 37 chr1 182962531 182962746 -59701607 - AluJo SINE Alu -32 280 52 340 297 137 24 chr1 182962891 182963140 -59701213 + L1ME LINE L1 5258 5534 -632 21 0 0 0 chr1 182963504 182963525 -59700828 + AT_rich Low_complexity Low_complexity 1 21 0 197 328 69 38 chr1 182963546 182963677 -59700676 - L2 LINE L2 -1 3271 3137 27 0 0 0 chr1 182964468 182964495 -59699858 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr1 182964800 182964829 -59699524 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 182965011 182965031 -59699322 + (TC)n Simple_repeat Simple_repeat 1 20 0 303 95 60 12 chr1 182965031 182965115 -59699238 + (CA)n Simple_repeat Simple_repeat 1 88 0 1179 240 141 32 chr1 182965304 182965738 -59698615 - MLT1D LTR MaLR -24 481 1 1030 114 0 0 chr1 182965827 182965976 -59698377 - L1PA11 LINE L1 -6 6168 6020 318 342 136 0 chr1 183166656 183166840 -59497513 + MER115 DNA AcHobo 158 366 -327 554 264 19 0 chr1 183166906 183167065 -59497288 + MER115 DNA AcHobo 510 671 -22 186 219 0 0 chr1 183168437 183168478 -59495875 + MIR SINE MIR 112 152 -110 564 42 0 0 chr1 183169566 183169637 -59494716 + (TG)n Simple_repeat Simple_repeat 1 71 0 4140 47 2 2 chr1 183169949 183170477 -59493876 + L1P LINE L1 4752 5279 -867 183 80 71 54 chr1 183170581 183170693 -59493660 + (TA)n Simple_repeat Simple_repeat 1 114 0 203 88 29 0 chr1 183170727 183170761 -59493592 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 293 197 5 58 chr1 183170797 183170962 -59493391 + (TA)n Simple_repeat Simple_repeat 1 156 -22 189 0 0 0 chr1 183170962 183170983 -59493370 + (TG)n Simple_repeat Simple_repeat 2 22 0 293 197 5 58 chr1 183170983 183171005 -59493348 + (TA)n Simple_repeat Simple_repeat 156 178 0 300 256 52 80 chr1 183171007 183171254 -59493099 - MER34 LTR ERV1 -275 432 11 1226 21 0 0 chr1 183171537 183171678 -59492675 - AluY SINE Alu -12 299 159 507 325 29 12 chr1 183171791 183172031 -59492322 - L2 LINE L2 -1210 2104 1861 339 344 78 19 chr1 183172107 183172377 -59491976 - L2 LINE L2 -1204 2110 1825 1352 221 37 0 chr1 183173205 183173477 -59490876 + AluJb SINE Alu 1 282 -30 209 139 23 23 chr1 183173502 183173545 -59490808 + (CA)n Simple_repeat Simple_repeat 1 43 0 4208 191 88 20 chr1 183173644 183174537 -59489816 + LTR28 LTR ERV1 1 954 -66 306 296 0 0 chr1 183174585 183174656 -59489697 + LTR28 LTR ERV1 949 1019 -1 2035 246 69 49 chr1 183174982 183175702 -59488651 - L1ME1 LINE L1 -22 6144 5410 680 266 11 5 chr1 183175727 183175911 -59488442 - MER58A DNA MER1_type -2 222 38 1377 277 81 26 chr1 183175942 183176094 -59488259 - L1ME1 LINE L1 -745 5401 5259 194 0 0 37 chr1 183176094 183176121 -59488232 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 1377 277 81 26 chr1 183176121 183176773 -59487580 - L1ME1 LINE L1 -887 5259 4553 28 0 0 0 chr1 183176773 183176801 -59487552 + AT_rich Low_complexity Low_complexity 1 28 0 845 146 0 0 chr1 183176801 183176931 -59487422 - FRAM SINE Alu -26 150 21 455 177 38 0 chr1 183176939 183177018 -59487335 - AluJ/FLAM SINE Alu -228 84 3 346 313 27 27 chr1 183177019 183177166 -59487187 - L1ME1 LINE L1 -1600 4546 4400 3479 203 67 28 chr1 183177172 183178121 -59486232 - L1MB8 LINE L1 -5 6173 5187 1364 228 45 47 chr1 183178103 183178573 -59485780 - L1MB8 LINE L1 -1308 4838 4370 * 896 231 31 55 chr1 183178576 183178832 -59485521 - AluJo SINE Alu -38 274 25 1988 255 28 39 chr1 183178843 183179596 -59484757 - L1MB8 LINE L1 -1764 4382 3638 1836 79 0 8 chr1 183181164 183181405 -59482948 - AluY SINE Alu -37 274 36 21 57 0 0 chr1 183182594 183182629 -59481724 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr1 183183078 183183113 -59481240 + AT_rich Low_complexity Low_complexity 1 35 0 1875 122 11 7 chr1 183183272 183183558 -59480795 + THE1B LTR MaLR 78 364 0 441 0 0 0 chr1 183184833 183184882 -59479471 + (CA)n Simple_repeat Simple_repeat 2 50 0 1468 224 157 141 chr1 183185576 183186127 -59478226 - L1MD3 LINE L1 -3 7992 7452 250 208 42 104 chr1 183186127 183186223 -59478130 - MLT1F1 LTR MaLR -443 124 35 1468 224 157 141 chr1 183186223 183186593 -59477760 - L1MD3 LINE L1 -543 7452 7090 1397 219 0 24 chr1 183186593 183186881 -59477472 - AluJo SINE Alu -31 281 1 1468 224 157 141 chr1 183186881 183186945 -59477408 - L1MD3 LINE L1 -905 7090 6681 247 223 223 11 chr1 183187881 183187975 -59476378 + MLT1I LTR MaLR 296 409 0 4704 213 45 15 chr1 183188184 183189285 -59475068 + L1MC3 LINE L1 5814 6946 -839 1390 218 39 14 chr1 183189296 183189707 -59474646 + L1MC3 LINE L1 7344 7994 -1 224 151 0 19 chr1 183189764 183189817 -59474536 + (TA)n Simple_repeat Simple_repeat 1 52 0 32 57 0 0 chr1 183189942 183189995 -59474358 + AT_rich Low_complexity Low_complexity 1 53 0 33 85 0 0 chr1 183190342 183190424 -59473929 + AT_rich Low_complexity Low_complexity 1 82 0 21 100 0 0 chr1 183190823 183190893 -59473460 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr1 183191862 183191884 -59472469 + AT_rich Low_complexity Low_complexity 1 22 0 369 235 13 74 chr1 183192715 183192864 -59471489 + MIR SINE MIR 57 196 -66 827 227 5 14 chr1 183192892 183193108 -59471245 - L1MA10 LINE L1 -5 6329 6116 496 156 88 15 chr1 183193113 183193254 -59471099 - MER57A LTR ERV1 0 403 225 1833 162 19 75 chr1 183193287 183193712 -59470641 + MER52A LTR ERV1 1350 1750 -5 3816 140 41 13 chr1 183193717 183194351 -59470002 + MER52A-int LTR ERV1 1 652 -6439 636 275 124 20 chr1 183194724 183195127 -59469226 - HsTC2 DNA Tc2 -89 1809 1189 189 94 0 0 chr1 183195444 183195476 -59468877 + (TC)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr1 183195497 183195524 -59468829 + AT_rich Low_complexity Low_complexity 1 27 0 2318 104 0 0 chr1 183196439 183196746 -59467607 - AluSc SINE Alu 0 309 3 2770 224 34 25 chr1 183197677 183197814 -59466539 - L1MB5 LINE L1 -11 6163 6029 1637 163 20 80 chr1 183197814 183198213 -59466140 + THE1C LTR MaLR 1 375 0 2770 224 34 25 chr1 183198213 183198781 -59465572 - L1MB5 LINE L1 -145 6029 5452 454 360 32 28 chr1 183200113 183200227 -59464126 + MIR SINE MIR 13 125 -137 1659 209 8 37 chr1 183200227 183200628 -59463725 + MLT1B LTR MaLR 1 389 -1 454 360 32 28 chr1 183200628 183200760 -59463593 + MIR SINE MIR 125 260 -2 224 204 0 0 chr1 183200885 183200929 -59463424 + (TG)n Simple_repeat Simple_repeat 1 44 0 3272 184 33 31 chr1 183203676 183204406 -59459947 + L1MB1 LINE L1 5438 6168 0 23 33 0 0 chr1 183204450 183204480 -59459873 + AT_rich Low_complexity Low_complexity 1 30 0 33 66 0 0 chr1 183205080 183205141 -59459212 + AT_rich Low_complexity Low_complexity 1 61 0 1857 86 0 16 chr1 183205154 183205398 -59458955 - AluSq SINE Alu -73 240 1 382 287 35 17 chr1 183205622 183205796 -59458557 - L1ME3A LINE L1 -219 5951 5775 426 280 85 21 chr1 183205807 183206040 -59458313 - L1ME3A LINE L1 -432 5730 5485 242 153 174 71 chr1 183206082 183206180 -59458173 - Looper DNA T2_type -43 1515 1408 267 189 349 38 chr1 183206358 183206464 -59457889 + L2 LINE L2 3175 3313 0 198 0 0 0 chr1 183207656 183207678 -59456675 + (TA)n Simple_repeat Simple_repeat 2 23 0 255 161 11 23 chr1 183207800 183207887 -59456466 + (TA)n Simple_repeat Simple_repeat 2 87 0 201 304 39 69 chr1 183208040 183208142 -59456211 - MIR SINE MIR -161 101 3 21 36 0 0 chr1 183208567 183208595 -59455758 + AT_rich Low_complexity Low_complexity 1 28 0 182 267 0 0 chr1 183208668 183208713 -59455640 - MIR SINE MIR 0 262 218 1479 200 51 21 chr1 183209668 183210003 -59454350 - MER66B LTR ERV1 -141 345 1 201 222 12 25 chr1 183211421 183211502 -59452851 + GA-rich Low_complexity Low_complexity 3 82 0 38 51 0 0 chr1 183213262 183213321 -59451032 + AT_rich Low_complexity Low_complexity 1 59 0 2347 46 0 7 chr1 183213432 183213740 -59450613 - AluY SINE Alu 0 306 1 435 289 79 81 chr1 183213798 183214255 -59450098 + L1ME LINE L1 451 906 -5164 21 36 0 0 chr1 183214266 183214294 -59450059 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr1 183214856 183214883 -59449470 + (TA)n Simple_repeat Simple_repeat 2 28 0 1947 127 0 24 chr1 183215143 183215434 -59448919 - AluSx SINE Alu -28 284 1 2257 120 8 22 chr1 183215454 183215821 -59448532 + THE1B LTR MaLR 1 362 -2 226 313 194 49 chr1 183216046 183216330 -59448023 - MLT1H LTR MaLR 0 549 225 3916 61 4 0 chr1 183217002 183217511 -59446842 - L1PA8 LINE L1 -6 6166 5658 5656 120 18 42 chr1 183217886 183219213 -59445140 - L1PA13 LINE L1 -6 6157 4847 42 48 0 0 chr1 183219221 183219284 -59445069 + AT_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr1 183220078 183220108 -59444245 + AT_rich Low_complexity Low_complexity 1 30 0 198 354 24 0 chr1 183220394 183220476 -59443877 - L2 LINE L2 -9 3304 3221 6536 201 123 30 chr1 183220567 183222136 -59442217 + MER52A LTR ERV1 39 1753 -2 35 41 0 0 chr1 183223109 183223158 -59441195 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr1 183223333 183223358 -59440995 + AT_rich Low_complexity Low_complexity 1 25 0 2708 135 0 40 chr1 183223494 183223946 -59440407 - MER57B LTR ERV1 0 434 1 643 330 121 39 chr1 183224157 183225033 -59439320 - L2 LINE L2 0 3313 2375 1877 158 41 15 chr1 183225046 183225388 -59438965 - MER41E LTR ERV1 -17 495 145 298 276 31 20 chr1 183225390 183225488 -59438865 + MIR SINE MIR 85 183 -79 815 140 14 14 chr1 183225514 183225657 -59438696 - MER41E LTR ERV1 -369 143 1 1589 276 122 48 chr1 183225764 183226602 -59437751 - L2 LINE L2 -930 2384 1485 21 0 0 0 chr1 183226818 183226839 -59437514 + AT_rich Low_complexity Low_complexity 1 21 0 283 241 58 0 chr1 183227715 183227802 -59436551 - L2 LINE L2 -2619 695 604 357 352 41 20 chr1 183228278 183228474 -59435879 + MIR SINE MIR 2 201 -61 1634 128 11 44 chr1 183228930 183229203 -59435150 - MER4A LTR ERV1 -32 632 369 1143 189 89 95 chr1 183229198 183229557 -59434796 + THE1C LTR MaLR 19 375 0 * 3283 168 3 3 chr1 183229557 183230128 -59434225 + THE1C-int LTR MaLR 1 571 -1080 1145 113 11 17 chr1 183230150 183230327 -59434026 - THE1B LTR MaLR -188 176 1 1425 234 78 40 chr1 183230618 183231119 -59433234 + L1ME2 LINE L1 5593 6112 -52 7707 27 0 3 chr1 183231136 183232820 -59431533 + L1PA4 LINE L1 4471 6150 -5 35 54 0 0 chr1 183232826 183232882 -59431471 + AT_rich Low_complexity Low_complexity 1 56 0 277 325 20 114 chr1 183232916 183233214 -59431139 - L2 LINE L2 -173 3099 2830 324 344 46 20 chr1 183233224 183233419 -59430934 - HAL1 LINE L1 -857 1650 1451 1317 201 112 3 chr1 183233856 183234169 -59430184 - MLT2C1 LTR ERVL -48 349 3 21 0 0 0 chr1 183234198 183234219 -59430134 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 183236442 183236475 -59427878 + AT_rich Low_complexity Low_complexity 1 33 0 1150 209 150 52 chr1 183236503 183236963 -59427390 + MLT1D LTR MaLR 1 505 0 395 364 115 0 chr1 183237103 183237268 -59427085 + L2 LINE L2 2843 3026 -287 780 213 7 7 chr1 183237310 183237465 -59426888 + MER2 DNA MER2_type 6 160 -185 362 218 200 36 chr1 183237514 183237679 -59426674 + MER2 DNA MER2_type 147 338 -7 501 275 21 111 chr1 183237695 183237975 -59426378 + L2 LINE L2 3057 3311 -2 1244 223 7 36 chr1 183238140 183238441 -59425912 + AluJo SINE Alu 1 292 -20 333 0 0 0 chr1 183238504 183238541 -59425812 + (TA)n Simple_repeat Simple_repeat 2 38 0 2192 125 0 3 chr1 183238544 183238857 -59425496 - AluSx SINE Alu 0 312 1 1987 149 0 0 chr1 183240328 183240616 -59423737 + AluSx SINE Alu 1 288 -24 369 346 13 20 chr1 183241718 183241871 -59422482 - MER5A DNA MER1_type 0 189 38 2305 100 0 0 chr1 183242444 183242755 -59421598 + AluY SINE Alu 1 311 0 553 211 8 16 chr1 183243216 183243344 -59421009 + MLT1A1 LTR MaLR 13 139 -226 1867 174 31 20 chr1 183243344 183243700 -59420653 + THE1B LTR MaLR 1 360 -4 8431 119 13 5 chr1 183243704 183244939 -59419414 + THE1B-int LTR MaLR 1 1245 -335 3218 183 36 88 chr1 183245046 183245545 -59418808 - L1 LINE L1 -2200 5365 4937 180 0 0 0 chr1 183245545 183245565 -59418788 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3218 183 36 88 chr1 183245565 183246025 -59418328 - L1 LINE L1 -2628 4937 4455 477 179 0 0 chr1 183246027 183246111 -59418242 - AluS SINE Alu -229 84 1 498 291 93 52 chr1 183246206 183246495 -59417858 - L1 LINE L1 -4170 3396 2822 2215 127 0 0 chr1 183246502 183246810 -59417543 - AluSc SINE Alu -1 308 1 432 241 9 0 chr1 183246966 183247074 -59417279 - L1ME1 LINE L1 -173 5993 5885 3315 268 28 51 chr1 183247211 183248506 -59415847 - L1 LINE L1 -4520 2976 1818 207 0 0 0 chr1 183248792 183248815 -59415538 + (TTG)n Simple_repeat Simple_repeat 2 24 0 206 81 27 0 chr1 183248829 183248866 -59415487 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 500 304 97 14 chr1 183249145 183249362 -59414991 + MIR SINE MIR 18 252 -10 225 318 86 50 chr1 183249434 183249796 -59414557 - HsTC2 DNA Tc2 -1021 877 503 198 0 0 0 chr1 183249947 183249969 -59414384 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 7474 33 0 1 chr1 183249974 183251440 -59412913 - L1PA4 LINE L1 -3 6152 4688 1104 195 66 26 chr1 183251555 183251827 -59412526 - AluJb SINE Alu -19 283 1 522 188 30 0 chr1 183251884 183251985 -59412368 + FLAM_A SINE Alu 20 123 -19 27 49 0 0 chr1 183252141 183252182 -59412171 + AT_rich Low_complexity Low_complexity 1 41 0 583 242 0 0 chr1 183252205 183252329 -59412024 - FLAM_A SINE Alu -6 127 4 223 208 19 0 chr1 183252659 183252712 -59411641 + T-rich Low_complexity Low_complexity 2 55 0 722 200 22 44 chr1 183252734 183252914 -59411439 - MER20 DNA MER1_type -10 209 34 24 0 0 0 chr1 183252986 183253010 -59411343 + AT_rich Low_complexity Low_complexity 1 24 0 965 250 0 19 chr1 183253270 183253478 -59410875 - MER58A DNA MER1_type -19 205 2 474 49 0 0 chr1 183253963 183254024 -59410329 + (TG)n Simple_repeat Simple_repeat 2 62 0 2294 264 37 13 chr1 183254578 183255257 -59409096 - L1ME1 LINE L1 -5 6555 5861 490 304 132 47 chr1 183255420 183255973 -59408380 - L1ME1 LINE L1 -4432 2108 1509 205 177 0 48 chr1 183256057 183256119 -59408234 + (CATA)n Simple_repeat Simple_repeat 2 60 0 455 333 18 6 chr1 183256121 183256286 -59408067 - MIR SINE MIR -87 175 9 201 175 0 0 chr1 183256530 183256570 -59407783 + GA-rich Low_complexity Low_complexity 1 40 0 1201 167 41 68 chr1 183257636 183257930 -59406423 - AluJb SINE Alu -14 288 3 23 0 0 0 chr1 183258614 183258637 -59405716 + AT_rich Low_complexity Low_complexity 1 23 0 341 298 11 58 chr1 183259751 183259942 -59404411 + MLT1L LTR MaLR 421 602 -13 2267 161 49 5 chr1 183260350 183260755 -59403598 - MSTB LTR MaLR 0 426 4 2820 145 56 6 chr1 183261014 183261517 -59402836 - HSMAR2 DNA Mariner -1 1301 774 1757 147 31 100 chr1 183261519 183261908 -59402445 - THE1B LTR MaLR -2 362 1 1836 97 0 4 chr1 183261908 183262167 -59402186 - THE1B-int LTR MaLR 0 1580 1323 468 148 28 19 chr1 183262286 183262394 -59401959 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 831 130 0 15 chr1 183262394 183262525 -59401828 + L1PA13 LINE L1 5782 5910 -253 401 60 0 0 chr1 183262524 183262574 -59401779 + L1PA13 LINE L1 5792 5841 -322 * 222 247 0 0 chr1 183262575 183262652 -59401701 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 1963 151 12 3 chr1 183262660 183262992 -59401361 - L1P4 LINE L1 -357 5806 5472 21 57 0 0 chr1 183263065 183263100 -59401253 + AT_rich Low_complexity Low_complexity 1 35 0 37 0 0 0 chr1 183263509 183263546 -59400807 + AT_rich Low_complexity Low_complexity 1 37 0 1418 158 0 32 chr1 183263843 183264117 -59400236 + THE1B LTR MaLR 1 355 0 2258 111 24 0 chr1 183264117 183264451 -59399902 + THE1B-int LTR MaLR 1 342 -1238 274 293 136 0 chr1 183265446 183265586 -59398767 + MLT1F1 LTR MaLR 190 348 -219 * 398 234 56 0 chr1 183265583 183265690 -59398663 + MLT1F1 LTR MaLR 455 567 0 246 351 11 0 chr1 183265844 183265938 -59398415 + MLT1L LTR MaLR 97 191 -424 2312 186 40 9 chr1 183265938 183266385 -59397968 + LOR1b LTR ERV1 1 461 0 26 30 0 0 chr1 183266494 183266527 -59397826 + AT_rich Low_complexity Low_complexity 1 33 0 1435 201 23 84 chr1 183266607 183267000 -59397353 + MLT1A2 LTR MaLR 1 369 -5 2049 135 0 19 chr1 183267355 183267666 -59396687 - AluSx SINE Alu -3 309 5 291 207 50 25 chr1 183267830 183267951 -59396402 - L1MEc LINE L1 -4974 1422 1299 23 0 0 0 chr1 183268232 183268255 -59396098 + AT_rich Low_complexity Low_complexity 1 23 0 3639 111 0 4 chr1 183268321 183268833 -59395520 + MER9 LTR ERVK 2 511 0 2010 129 3 3 chr1 183269289 183269592 -59394761 - AluSg SINE Alu -7 303 1 21 36 0 0 chr1 183269635 183269663 -59394690 + AT_rich Low_complexity Low_complexity 1 28 0 475 340 36 16 chr1 183269876 183270126 -59394227 + MIR SINE MIR 8 262 0 2189 179 45 16 chr1 183270306 183270754 -59393599 + LOR1b LTR ERV1 1 461 0 24 0 0 0 chr1 183271269 183271293 -59393060 + AT_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr1 183272040 183272069 -59392284 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 243 483 21 78 chr1 183272261 183272648 -59391705 - L2 LINE L2 -13 3300 2936 551 194 65 0 chr1 183273777 183273885 -59390468 + FLAM_A SINE Alu 9 123 -19 33 43 0 0 chr1 183274821 183274868 -59389485 + AT_rich Low_complexity Low_complexity 1 47 0 22 56 0 0 chr1 183274946 183274982 -59389371 + AT_rich Low_complexity Low_complexity 1 36 0 235 193 18 53 chr1 183275256 183275313 -59389040 - MLT1J2 LTR MaLR -64 386 332 263 306 0 0 chr1 183275447 183275532 -59388821 - MLT1J1 LTR MaLR -330 116 32 1875 198 8 6 chr1 183275595 183275953 -59388400 + L1PA15-16 LINE L1 3 361 -6488 2306 166 10 5 chr1 183275966 183276370 -59387983 + MSTA LTR MaLR 19 424 -4 2066 131 3 3 chr1 183276385 183276697 -59387656 + AluSx SINE Alu 1 312 0 1239 255 57 43 chr1 183276697 183277066 -59387287 + L1PA15-16 LINE L1 360 733 -6116 2619 272 38 22 chr1 183277498 183279385 -59384968 + L1PA15-16 LINE L1 1377 3514 -3335 375 248 2 6 chr1 183279523 183279622 -59384731 + L1MC/D LINE L1 5697 5793 -390 247 315 22 0 chr1 183279618 183279707 -59384646 + L1MC4 LINE L1 6615 6705 -1337 * 255 286 0 22 chr1 183279721 183279812 -59384541 + L1MC4 LINE L1 6614 6702 -1340 272 134 104 30 chr1 183279821 183279888 -59384465 + L1MD1 LINE L1 5780 5851 -315 1301 199 57 83 chr1 183279929 183280352 -59384001 + L1MD1 LINE L1 5831 6242 0 1461 179 53 53 chr1 183280435 183280810 -59383543 + THE1C LTR MaLR 1 375 0 9323 142 6 35 chr1 183280812 183282437 -59381916 + THE1C-int LTR MaLR 3 1580 0 1008 176 59 31 chr1 183282437 183282747 -59381606 + THE1C LTR MaLR 1 372 -3 34 0 0 0 chr1 183284267 183284301 -59380052 + AT_rich Low_complexity Low_complexity 1 34 0 35 71 0 0 chr1 183285703 183285773 -59378580 + AT_rich Low_complexity Low_complexity 1 70 0 337 189 67 0 chr1 183285773 183285863 -59378490 - L1MA5A LINE L1 -2 6295 6200 6132 164 35 18 chr1 183285863 183286792 -59377561 - L1MA5A LINE L1 -42 6255 5344 2343 83 0 3 chr1 183286792 183287094 -59377259 + AluY SINE Alu 1 301 -10 6132 164 35 18 chr1 183287094 183288140 -59376213 - L1MA5A LINE L1 -953 5344 4216 1261 56 0 0 chr1 183288140 183288300 -59376053 - L1PA7 LINE L1 0 6154 5995 6132 164 35 18 chr1 183288300 183288511 -59375842 - L1MA5A LINE L1 -2081 4216 4010 1682 174 3 0 chr1 183289310 183289619 -59374734 - AluSx SINE Alu 0 310 1 206 338 14 0 chr1 183289745 183289816 -59374537 + L2 LINE L2 3201 3272 0 234 413 25 0 chr1 183289855 183289976 -59374377 + L2 LINE L2 2527 2650 -664 403 287 39 65 chr1 183290017 183290296 -59374057 - L1ME1 LINE L1 -5 6161 5890 849 330 50 11 chr1 183290402 183290781 -59373572 - L1MEc LINE L1 -5967 429 36 799 226 0 0 chr1 183290798 183290957 -59373396 + AluJb SINE Alu 130 288 -24 190 291 76 13 chr1 183291071 183291150 -59373203 + L2 LINE L2 2824 2907 -365 408 286 74 77 chr1 183292110 183292270 -59372083 + L1MEc LINE L1 1587 1746 -4975 1706 186 6 3 chr1 183292270 183292581 -59371772 + AluSx SINE Alu 1 312 0 408 286 74 77 chr1 183292581 183293134 -59371219 + L1MEc LINE L1 1746 2361 -4360 232 299 72 23 chr1 183293191 183293455 -59370898 + L1MEc LINE L1 2458 2734 -3987 215 376 78 0 chr1 183293519 183293660 -59370693 + L2 LINE L2 3147 3298 -15 8091 116 21 57 chr1 183294362 183295690 -59368663 - HSMAR1 DNA Mariner -6 1281 1 418 272 117 17 chr1 183295823 183296003 -59368350 + HERV16 LTR ERVL 687 884 -4112 2024 336 56 11 chr1 183296721 183297691 -59366662 + HERV16 LTR ERVL 1721 2733 -2263 193 329 24 24 chr1 183297724 183297806 -59366547 - L2 LINE L2 -534 2780 2699 374 173 27 18 chr1 183297874 183297984 -59366369 + GA-rich Low_complexity Low_complexity 4 114 0 218 156 22 0 chr1 183298375 183298420 -59365933 + (CA)n Simple_repeat Simple_repeat 2 47 0 208 200 22 0 chr1 183298424 183298469 -59365884 + (TA)n Simple_repeat Simple_repeat 1 46 0 291 295 78 30 chr1 183298980 183299146 -59365207 - MIR SINE MIR -17 245 72 2356 61 7 3 chr1 183299402 183299698 -59364655 - AluY SINE Alu -14 297 1 23 54 0 0 chr1 183302485 183302522 -59361831 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr1 183302697 183302736 -59361617 + AT_rich Low_complexity Low_complexity 1 39 0 1958 101 18 22 chr1 183304878 183305204 -59359149 - AluSx SINE Alu 0 312 23 3143 168 7 0 chr1 183305421 183305980 -59358373 + L1PA16 LINE L1 5595 6157 -9 1161 260 36 18 chr1 183306122 183306453 -59357900 + L1ME1 LINE L1 5802 6138 -28 243 61 0 0 chr1 183307875 183307908 -59356445 + (CA)n Simple_repeat Simple_repeat 2 34 0 1421 245 39 11 chr1 183310203 183310558 -59353795 - MLT1A1 LTR MaLR 0 365 1 1790 328 53 19 chr1 183310780 183311654 -59352699 - L2 LINE L2 -274 3039 2143 1174 317 123 22 chr1 183311807 183312410 -59351943 - L2 LINE L2 -1683 1631 968 625 138 0 94 chr1 183312410 183312548 -59351805 - Tigger2a DNA MER2_type -309 125 1 2272 111 3 0 chr1 183312602 183312909 -59351444 - AluSx SINE Alu -3 309 2 261 254 69 0 chr1 183312933 183313063 -59351290 + MER20B DNA MER1_type 573 711 -72 304 290 40 8 chr1 183313298 183313422 -59350931 - LTR33 LTR ERVL -17 504 377 635 318 106 45 chr1 183313459 183313546 -59350807 - MLT1H1 LTR MaLR -155 400 320 1557 226 50 29 chr1 183313546 183314001 -59350352 - MLT1C LTR MaLR -2 465 1 635 318 106 45 chr1 183314001 183314290 -59350063 - MLT1H1 LTR MaLR -235 320 1 318 341 65 31 chr1 183314304 183314594 -59349759 - HERVL LTR ERVL -517 5247 4948 2019 157 0 0 chr1 183314629 183314935 -59349418 + AluSx SINE Alu 3 308 -4 1961 169 61 12 chr1 183314949 183315583 -59348770 - L1P5 LINE L1 -653 5503 4844 871 157 3 2 chr1 183315581 183315736 -59348617 + L1M4 LINE L1 5526 5681 -492 * 305 299 95 44 chr1 183315755 183316029 -59348324 - HERVL LTR ERVL -3784 1870 1583 1864 122 0 28 chr1 183316720 183317007 -59347346 + AluSp SINE Alu 1 279 -34 21 0 0 0 chr1 183318109 183318130 -59346223 + AT_rich Low_complexity Low_complexity 1 21 0 309 169 14 14 chr1 183318260 183318331 -59346022 + L1MA3 LINE L1 6234 6304 -1 34 24 0 0 chr1 183318331 183318372 -59345981 + AT_rich Low_complexity Low_complexity 1 41 0 1819 76 0 4 chr1 183319859 183320097 -59344256 + AluY SINE Alu 44 312 0 268 31 0 0 chr1 183320097 183320129 -59344224 + (CAAA)n Simple_repeat Simple_repeat 1 128 0 288 137 0 0 chr1 183320237 183320288 -59344065 + (CA)n Simple_repeat Simple_repeat 2 52 0 2526 209 19 6 chr1 183320498 183321011 -59343342 - MLT2B1 LTR ERVL 0 520 1 1606 178 10 17 chr1 183321230 183321528 -59342825 + AluSx SINE Alu 1 296 -16 309 220 20 40 chr1 183322977 183323077 -59341276 - MER94 DNA DNA -36 98 1 381 226 142 0 chr1 183323838 183323944 -59340409 - MER63 DNA MER1_type -89 747 1 210 246 0 0 chr1 183324053 183324114 -59340239 + CT-rich Low_complexity Low_complexity 1 61 0 1760 248 41 67 chr1 183324731 183325432 -59338921 - LTR8 LTR ERV1 -8 683 1 268 228 43 22 chr1 183326006 183326098 -59338255 + MLT1J1 LTR MaLR 351 444 -2 23 33 0 0 chr1 183326872 183326902 -59337451 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr1 183327032 183327062 -59337291 + AT_rich Low_complexity Low_complexity 1 30 0 1900 181 8 8 chr1 183327322 183327681 -59336672 - L1MA6 LINE L1 0 6300 5942 1470 195 60 0 chr1 183327681 183327983 -59336370 + L1MA6 LINE L1 5615 5934 -366 282 323 8 0 chr1 183328042 183328172 -59336181 - L1M4 LINE L1 -1529 4617 4487 325 319 89 26 chr1 183328269 183328460 -59335893 - L1M4 LINE L1 -1806 4340 4138 2077 116 0 7 chr1 183330874 183331176 -59333177 + AluSq SINE Alu 1 300 -13 216 0 0 0 chr1 183332305 183332329 -59332024 + (A)n Simple_repeat Simple_repeat 1 24 0 259 189 0 56 chr1 183332661 183332804 -59331549 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 27 29 0 0 chr1 183332892 183332926 -59331427 + AT_rich Low_complexity Low_complexity 1 34 0 211 184 0 40 chr1 183333123 183333199 -59331154 + (TATAA)n Simple_repeat Simple_repeat 1 73 0 22 0 0 0 chr1 183334037 183334059 -59330294 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr1 183334663 183334698 -59329655 + AT_rich Low_complexity Low_complexity 1 35 0 2127 129 59 8 chr1 183335144 183335501 -59328852 - THE1C LTR MaLR 0 375 1 8924 134 35 40 chr1 183335501 183337088 -59327265 - THE1C-int LTR MaLR 0 1580 1 2207 132 44 11 chr1 183337088 183337451 -59326902 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr1 183337508 183337534 -59326819 + AT_rich Low_complexity Low_complexity 1 26 0 28 71 0 0 chr1 183337829 183337885 -59326468 + AT_rich Low_complexity Low_complexity 1 56 0 362 264 168 6 chr1 183338040 183338207 -59326146 - MER5C DNA MER1_type 0 324 131 595 200 42 0 chr1 183338908 183339028 -59325325 - MER5C DNA MER1_type -199 125 1 488 324 107 31 chr1 183339796 183340280 -59324073 + LTR33 LTR ERVL 1 521 0 535 301 82 9 chr1 183340389 183340731 -59323622 + L1M4 LINE L1 4747 5113 -1033 854 184 92 0 chr1 183340855 183341040 -59323313 + MLT2C1 LTR ERVL 1 202 -195 592 277 22 0 chr1 183341054 183341238 -59323115 + L1PB1 LINE L1 6 193 -6670 14122 203 37 9 chr1 183341241 183346899 -59317454 + L1PB1 LINE L1 652 6867 0 538 269 19 13 chr1 183346943 183347099 -59317254 + MLT2C1 LTR ERVL 193 349 -48 1882 234 16 5 chr1 183347127 183347507 -59316846 + ERVL LTR ERVL 3364 3747 -2017 1312 211 4 4 chr1 183347513 183347760 -59316593 + MLT2C1 LTR ERVL 100 346 -51 8411 214 35 40 chr1 183348157 183351381 -59312972 + L1PA16 LINE L1 2722 5906 -260 192 97 0 0 chr1 183351971 183352002 -59312351 + (TTA)n Simple_repeat Simple_repeat 2 32 0 25 65 0 0 chr1 183352148 183352194 -59312159 + AT_rich Low_complexity Low_complexity 1 46 0 23 68 0 0 chr1 183352705 183352749 -59311604 + AT_rich Low_complexity Low_complexity 1 44 0 3726 257 52 36 chr1 183353025 183354315 -59310038 + L1MA4 LINE L1 16 2019 -5546 7055 179 39 43 chr1 183354415 183356493 -59307860 + L1MA4 LINE L1 5156 7228 -482 686 142 18 0 chr1 183356508 183356621 -59307732 + THE1C LTR MaLR 259 373 -2 2435 154 36 8 chr1 183356621 183357096 -59307257 + L1MA4 LINE L1 7226 7713 -6 346 254 95 24 chr1 183357696 183357865 -59306488 - L1 LINE L1 -1704 4442 4262 321 151 35 0 chr1 183358513 183358599 -59305754 + (TA)n Simple_repeat Simple_repeat 2 90 0 27 49 0 0 chr1 183358614 183358655 -59305698 + AT_rich Low_complexity Low_complexity 1 41 0 222 254 16 0 chr1 183358655 183358718 -59305635 + (TA)n Simple_repeat Simple_repeat 2 65 0 24 0 0 0 chr1 183358977 183359001 -59305352 + AT_rich Low_complexity Low_complexity 1 24 0 426 241 50 35 chr1 183360768 183360909 -59303444 - LTR67 LTR ERVL -8 549 407 795 274 32 35 chr1 183361141 183361484 -59302869 - L1ME3A LINE L1 -11 6159 5818 210 353 42 25 chr1 183362443 183362562 -59301791 + MIR SINE MIR 23 143 -119 536 154 19 0 chr1 183362627 183362731 -59301622 + L1MA9 LINE L1 5284 5389 -923 2092 159 28 57 chr1 183362747 183363173 -59301180 + L1MA9 LINE L1 5528 5940 -372 2397 66 0 0 chr1 183363173 183363474 -59300879 + AluY SINE Alu 1 301 -10 2092 159 28 57 chr1 183363474 183363518 -59300835 + L1MA9 LINE L1 5940 5984 -328 25 31 0 0 chr1 183363602 183363634 -59300719 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 183364481 183364506 -59299847 + AT_rich Low_complexity Low_complexity 1 25 0 201 196 0 0 chr1 183365134 183365180 -59299173 + (CAG)n Simple_repeat Simple_repeat 2 47 0 1290 198 22 15 chr1 183365950 183366218 -59298135 + AluJo SINE Alu 4 273 -39 35 24 0 0 chr1 183366222 183366264 -59298089 + AT_rich Low_complexity Low_complexity 1 42 0 432 0 0 0 chr1 183367280 183367328 -59297025 + (TG)n Simple_repeat Simple_repeat 2 49 0 357 24 0 0 chr1 183367327 183367369 -59296984 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 180 279 16 0 chr1 183367912 183367973 -59296380 - L2 LINE L2 -225 3047 2986 299 365 130 37 chr1 183368077 183368869 -59295484 - L2 LINE L2 -459 2855 1990 422 405 32 20 chr1 183370357 183370703 -59293650 + L2 LINE L2 2622 2971 -343 26 0 0 0 chr1 183371072 183371098 -59293255 + AT_rich Low_complexity Low_complexity 1 26 0 186 103 0 0 chr1 183371868 183371897 -59292456 + (GA)n Simple_repeat Simple_repeat 2 30 0 417 281 73 18 chr1 183372104 183372268 -59292085 + MER20B DNA MER1_type 1 173 -610 2783 264 65 24 chr1 183372298 183373583 -59290770 + L1M4 LINE L1 2714 4051 -2095 407 180 22 17 chr1 183373668 183373846 -59290507 + (TA)n Simple_repeat Simple_repeat 2 180 0 25 0 0 0 chr1 183373873 183373898 -59290455 + AT_rich Low_complexity Low_complexity 1 25 0 235 122 82 41 chr1 183374265 183374314 -59290039 + LTR67 LTR ERVL 366 416 -141 2281 226 57 0 chr1 183374522 183375032 -59289321 + Tigger3b DNA MER2_type 2 540 -691 225 65 0 0 chr1 183375034 183375065 -59289288 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6841 21 1 0 chr1 183375099 183375895 -59288458 - L1PA2 LINE L1 0 6155 5359 * 8964 32 2 1 chr1 183375889 183376964 -59287389 + L1P LINE L1 4027 5102 -1044 5397 16 3 0 chr1 183377093 183377718 -59286635 - L1PA2 LINE L1 -170 5985 5359 * 11293 28 2 0 chr1 183377712 183379065 -59285288 + L1PA2 LINE L1 4027 5382 -764 253 152 190 0 chr1 183379065 183379144 -59285209 + Tigger3b DNA MER2_type 533 626 -606 432 117 0 0 chr1 183379157 183379234 -59285119 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 2094 93 4 0 chr1 183379234 183379514 -59284839 - AluY SINE Alu -30 281 1 2841 130 26 18 chr1 183379517 183380011 -59284342 + Tigger3b DNA MER2_type 623 1120 -112 12987 166 58 36 chr1 183381529 183383143 -59281210 - Tigger4(Zombi) DNA MER2_type 0 2731 1155 2253 70 7 0 chr1 183383143 183383430 -59280923 - AluY SINE Alu -22 289 1 12987 166 58 36 chr1 183383430 183384082 -59280271 - Tigger4(Zombi) DNA MER2_type -1576 1155 393 2054 142 3 0 chr1 183384082 183384392 -59279961 - AluSx SINE Alu -1 311 1 12987 166 58 36 chr1 183384392 183384795 -59279558 - Tigger4(Zombi) DNA MER2_type -2338 393 1 659 267 78 5 chr1 183385437 183385654 -59278699 - MER115 DNA AcHobo -8 685 453 7504 23 1 3 chr1 183386007 183387271 -59277082 + L1PA3 LINE L1 4890 6152 -3 32 0 0 0 chr1 183387272 183387304 -59277049 + AT_rich Low_complexity Low_complexity 1 32 0 23 78 0 0 chr1 183387765 183387816 -59276537 + AT_rich Low_complexity Low_complexity 1 51 0 1469 187 16 29 chr1 183388285 183388737 -59275616 - L1MA6 LINE L1 -695 5605 5161 3247 159 23 65 chr1 183388738 183388901 -59275452 + L1MA6 LINE L1 5600 5768 -532 1128 214 132 23 chr1 183388901 183389167 -59275186 + AluJb SINE Alu 1 295 -7 3247 159 23 65 chr1 183389167 183389732 -59274621 + L1MA6 LINE L1 5768 6298 -2 328 252 63 19 chr1 183389815 183389974 -59274379 + HsTC2 DNA Tc2 1732 1897 -1 430 248 75 15 chr1 183391041 183391174 -59273179 + MLT1G LTR MaLR 14 154 -436 228 308 0 0 chr1 183391221 183391286 -59273067 - L1MEc LINE L1 -5834 562 498 323 256 12 0 chr1 183391362 183391448 -59272905 - L1MEc LINE L1 -6271 125 39 30 27 0 0 chr1 183391579 183391616 -59272737 + AT_rich Low_complexity Low_complexity 1 37 0 261 366 122 6 chr1 183391739 183391903 -59272450 - MER5A DNA MER1_type 0 189 7 23 0 0 0 chr1 183392315 183392338 -59272015 + AT_rich Low_complexity Low_complexity 1 23 0 1557 279 80 27 chr1 183392991 183393543 -59270810 + L1MA8 LINE L1 466 1046 -6443 4968 246 58 31 chr1 183393619 183394538 -59269815 + L1MA8 LINE L1 1964 2857 -4708 1897 173 0 0 chr1 183394538 183394839 -59269514 + AluSx SINE Alu 1 301 -11 4968 246 58 31 chr1 183394839 183397073 -59267280 + L1MA8 LINE L1 2857 5208 -2357 2156 121 0 0 chr1 183397074 183397371 -59266982 + AluSg SINE Alu 1 297 -13 398 118 38 75 chr1 183397373 183397559 -59266794 + (TA)n Simple_repeat Simple_repeat 2 180 0 364 130 143 0 chr1 183397589 183397743 -59266610 + (CATAT)n Simple_repeat Simple_repeat 5 180 0 248 47 47 78 chr1 183397762 183397890 -59266463 + (TA)n Simple_repeat Simple_repeat 2 125 0 7592 187 32 25 chr1 183397897 183399631 -59264722 + L1MA8 LINE L1 5200 6961 -749 2410 59 0 29 chr1 183399631 183399938 -59264415 - AluY SINE Alu -9 302 5 7592 187 32 25 chr1 183399938 183400520 -59263833 + L1MA8 LINE L1 6961 7538 -172 584 206 0 8 chr1 183400522 183400648 -59263705 + FRAM SINE Alu 45 169 -7 646 238 18 0 chr1 183400648 183400816 -59263537 + L1MA8 LINE L1 7540 7710 0 255 146 0 0 chr1 183401582 183401623 -59262730 + MADE1 DNA Mariner 40 80 0 200 321 119 9 chr1 183401981 183402090 -59262263 + MIR SINE MIR 99 219 -43 180 152 0 0 chr1 183402142 183402175 -59262178 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1914 121 7 20 chr1 183403039 183403337 -59261016 - AluSx SINE Alu -18 294 1 289 379 90 17 chr1 183403737 183403973 -59260380 + LTR33A LTR ERVL 63 327 -196 1465 229 178 12 chr1 183403973 183404405 -59259948 + MLT1D LTR MaLR 2 505 0 289 379 90 17 chr1 183404405 183404469 -59259884 + LTR33A LTR ERVL 327 385 -138 2414 263 78 17 chr1 183404901 183406158 -59258195 + L1MEc LINE L1 412 1915 -4625 695 214 173 67 chr1 183406152 183406351 -59258002 + L1M4 LINE L1 4803 4980 -1166 * 2491 74 0 0 chr1 183406351 183406662 -59257691 + AluY SINE Alu 1 311 0 695 214 173 67 chr1 183406662 183406804 -59257549 + L1M4 LINE L1 4980 5180 -966 * 1800 245 90 16 chr1 183406803 183407468 -59256885 - L1MDa LINE L1 -3920 2620 1907 743 179 7 7 chr1 183407471 183407622 -59256731 - L1MB3 LINE L1 -1 6182 6032 21 71 0 0 chr1 183407628 183407670 -59256683 + AT_rich Low_complexity Low_complexity 1 42 0 2625 206 31 74 chr1 183407681 183408422 -59255931 - L1MB5 LINE L1 -138 6036 5328 1952 155 12 206 chr1 183408420 183408569 -59255784 + L1P LINE L1 4648 4824 -1322 * 2185 101 27 0 chr1 183408569 183408865 -59255488 + AluSx SINE Alu 1 304 -8 1952 155 12 206 chr1 183408865 183409219 -59255134 + L1P LINE L1 4824 4935 -1211 279 0 0 0 chr1 183409219 183409250 -59255103 + (TG)n Simple_repeat Simple_repeat 2 32 0 1952 155 12 206 chr1 183409250 183409562 -59254791 + L1P LINE L1 4935 5306 -840 647 200 100 18 chr1 183409625 183409795 -59254558 + L1MD1 LINE L1 6027 6210 -32 281 267 30 15 chr1 183409848 183409979 -59254374 + L1MEc LINE L1 1952 2084 -4637 318 308 144 23 chr1 183410112 183410417 -59253936 - L1MDa LINE L1 -3966 2574 2233 13708 166 52 21 chr1 183410596 183417068 -59247285 + L1MA1 LINE L1 1028 7711 -10 3392 194 37 15 chr1 183418178 183418297 -59246056 + L1MA5 LINE L1 5551 5666 -634 12264 150 39 50 chr1 183418297 183420740 -59243613 - Tigger1 DNA MER2_type 0 2418 3 3392 194 37 15 chr1 183420740 183421354 -59242999 + L1MA5 LINE L1 5666 6300 0 201 74 0 0 chr1 183422406 183422433 -59241920 + (T)n Simple_repeat Simple_repeat 1 27 0 26 30 0 0 chr1 183422883 183422916 -59241437 + AT_rich Low_complexity Low_complexity 1 33 0 32 26 0 0 chr1 183422927 183422966 -59241387 + AT_rich Low_complexity Low_complexity 1 39 0 180 125 0 0 chr1 183423424 183423456 -59240897 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 378 334 23 45 chr1 183423852 183424065 -59240288 - MER63B DNA MER1_type 0 1062 2 436 262 36 8 chr1 183424243 183424469 -59239884 + L1ME1 LINE L1 5282 5519 -646 366 65 0 81 chr1 183424444 183424506 -59239847 + L1P5 LINE L1 5556 5612 -539 * 557 232 77 56 chr1 183424878 183424988 -59239365 + L1MEc LINE L1 2190 2296 -4425 491 117 13 0 chr1 183424988 183425065 -59239288 + MADE1 DNA Mariner 3 80 0 557 232 77 56 chr1 183425065 183425294 -59239059 + L1MEc LINE L1 2296 2536 -4185 454 267 9 78 chr1 183425273 183425490 -59238863 + L1ME1 LINE L1 6265 6466 -94 * 29 0 0 0 chr1 183425956 183425985 -59238368 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 183426617 183426638 -59237715 + AT_rich Low_complexity Low_complexity 1 21 0 1708 161 20 77 chr1 183427560 183427950 -59236403 - L1MA4A LINE L1 -321 5982 5615 6174 190 51 4 chr1 183427952 183429607 -59234746 - L1 LINE L1 -3585 3623 1887 522 254 24 0 chr1 183429608 183429734 -59234619 - L1 LINE L1 -5844 1365 1237 203 152 0 0 chr1 183431118 183431151 -59233202 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 342 325 83 44 chr1 183433518 183433746 -59230607 - MIR SINE MIR -3 259 23 2049 132 53 34 chr1 183435549 183435905 -59228448 - THE1B LTR MaLR 0 364 2 3989 24 0 0 chr1 183436650 183437134 -59227219 + L1PA3 LINE L1 5676 6159 0 181 333 70 61 chr1 183438450 183438564 -59225789 + MIR SINE MIR 30 144 -64 385 267 23 53 chr1 183438678 183438809 -59225544 - L1MC4 LINE L1 -119 7923 7797 1030 312 72 33 chr1 183438995 183439405 -59224948 - L1MC4 LINE L1 -530 7512 7119 1328 214 23 13 chr1 183439405 183439713 -59224640 - AluJo SINE Alu -1 311 1 1030 312 72 33 chr1 183439713 183440233 -59224120 - L1MC4 LINE L1 -923 7119 6451 1267 180 73 0 chr1 183440452 183440697 -59223656 + MER2 DNA MER2_type 2 264 -81 1751 161 14 0 chr1 183440733 183441012 -59223341 - AluSx SINE Alu -26 286 4 405 225 0 12 chr1 183441015 183441095 -59223258 + MER2 DNA MER2_type 256 334 -11 269 319 124 35 chr1 183441978 183442147 -59222206 + LTR16A LTR ERVL 258 441 -9 315 0 0 0 chr1 183442147 183442182 -59222171 + (CA)n Simple_repeat Simple_repeat 2 36 0 229 199 15 61 chr1 183442888 183443019 -59221334 + (TATAA)n Simple_repeat Simple_repeat 1 125 0 731 205 50 21 chr1 183443061 183443326 -59221027 + MER66B LTR ERV1 185 478 0 200 170 19 19 chr1 183444209 183444262 -59220091 + A-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr1 183446154 183446175 -59218178 + AT_rich Low_complexity Low_complexity 1 21 0 181 427 0 13 chr1 183446222 183446297 -59218056 - MIR SINE MIR -169 93 20 239 188 0 14 chr1 183446361 183446430 -59217923 + (TA)n Simple_repeat Simple_repeat 1 68 0 26 30 0 0 chr1 183446485 183446518 -59217835 + AT_rich Low_complexity Low_complexity 1 33 0 1411 231 40 19 chr1 183446786 183447375 -59216978 + L1MD1 LINE L1 5036 5633 -609 350 237 52 10 chr1 183447456 183447553 -59216800 + L1MD1 LINE L1 5915 6015 -227 4014 193 22 47 chr1 183447568 183448583 -59215770 + L1PB4 LINE L1 4091 5079 -1067 734 203 21 0 chr1 183448599 183448742 -59215611 - MER61D LTR ERV1 -18 483 338 353 203 55 16 chr1 183449216 183449344 -59215009 + L1PB4 LINE L1 5075 5207 -939 826 123 0 0 chr1 183449445 183449567 -59214786 + L1PB3 LINE L1 6033 6154 0 3446 166 36 3 chr1 183449577 183450234 -59214119 + L1PB4 LINE L1 5477 6155 -1 435 171 234 86 chr1 183450234 183450409 -59213944 + L1MD1 LINE L1 6027 6227 -15 2150 108 0 0 chr1 183450910 183451197 -59213156 - AluSc SINE Alu -22 287 1 207 373 0 0 chr1 183451464 183451531 -59212822 + MIR3 SINE MIR 129 195 -13 23 33 0 0 chr1 183451727 183451757 -59212596 + AT_rich Low_complexity Low_complexity 1 30 0 26 82 0 0 chr1 183452344 183452405 -59211948 + AT_rich Low_complexity Low_complexity 1 61 0 227 330 52 47 chr1 183452417 183452608 -59211745 + Charlie7 DNA MER1_type 189 380 -2232 290 296 61 65 chr1 183452616 183453122 -59211231 + L1ME LINE L1 4475 4978 -1168 251 287 103 20 chr1 183453242 183453580 -59210773 + L1ME LINE L1 5201 5573 -589 1799 170 33 9 chr1 183453894 183454229 -59210124 - MER61A LTR ERV1 0 343 1 23026 96 45 16 chr1 183454229 183455787 -59208566 - MER61A-int LTR ERV1 0 5217 3706 2239 68 4 0 chr1 183455787 183456094 -59208259 + AluY SINE Alu 1 308 0 23026 96 45 16 chr1 183456094 183458039 -59206314 - MER61A-int LTR ERV1 -1511 3706 1655 190 331 195 13 chr1 183459047 183459201 -59205152 - L2 LINE L2 -575 2739 2558 506 350 51 12 chr1 183459280 183459611 -59204742 - MER20B DNA MER1_type -219 564 221 220 219 0 0 chr1 183459619 183459660 -59204693 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 407 290 77 53 chr1 183460387 183460594 -59203759 + MLT1J LTR MaLR 298 509 -2 628 144 25 0 chr1 183461567 183461685 -59202668 + L1MA8 LINE L1 6166 6286 -5 309 287 154 14 chr1 183462186 183462329 -59202024 + MLT1J LTR MaLR 1 163 -348 50 18 0 0 chr1 183462517 183462574 -59201779 + AT_rich Low_complexity Low_complexity 1 57 0 2438 107 6 3 chr1 183464127 183464481 -59199872 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr1 183464481 183464506 -59199847 + AT_rich Low_complexity Low_complexity 1 25 0 2167 115 10 0 chr1 183464661 183464966 -59199387 - AluSc SINE Alu -1 308 1 7253 152 36 22 chr1 183465230 183467701 -59196652 - L1MA2 LINE L1 0 6304 3801 211 219 31 31 chr1 183467813 183467877 -59196476 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 31 68 0 0 chr1 183468324 183468383 -59195970 + AT_rich Low_complexity Low_complexity 1 59 0 39 22 0 0 chr1 183469158 183469204 -59195149 + AT_rich Low_complexity Low_complexity 1 46 0 52 78 0 0 chr1 183469699 183469814 -59194539 + AT_rich Low_complexity Low_complexity 1 115 0 756 259 42 28 chr1 183471741 183471957 -59192396 + MER58A DNA MER1_type 1 219 -5 1332 218 63 59 chr1 183472075 183472552 -59191801 - MLT1D LTR MaLR 0 505 27 2214 36 53 40 chr1 183472694 183472997 -59191356 + AluY SINE Alu 1 307 -4 341 206 113 10 chr1 183473481 183473578 -59190775 + MLT1F1-int LTR MaLR 1606 1712 -23 1930 133 6 6 chr1 183473738 183474053 -59190300 - L1PA16 LINE L1 -9 6157 5843 875 231 88 19 chr1 183474053 183474269 -59190084 + MLT1F1 LTR MaLR 129 359 -208 8221 72 11 2 chr1 183474895 183476038 -59188315 - L1P LINE L1 -2301 3845 2692 6929 57 6 1 chr1 183476038 183477294 -59187059 + L1PA6 LINE L1 4861 6154 0 31 0 0 0 chr1 183477490 183477521 -59186832 + AT_rich Low_complexity Low_complexity 1 31 0 231 36 0 0 chr1 183477814 183477842 -59186511 + (A)n Simple_repeat Simple_repeat 1 28 0 315 375 22 54 chr1 183477842 183478026 -59186327 + L1MEc LINE L1 499 676 -6045 1981 209 32 28 chr1 183478296 183478759 -59185594 + MER76 LTR ERV 1 465 -223 5044 204 49 4 chr1 183478763 183480194 -59184159 + L1MC1 LINE L1 4842 6329 -4 22 35 0 0 chr1 183480234 183480263 -59184090 + AT_rich Low_complexity Low_complexity 1 29 0 323 23 23 0 chr1 183480291 183480335 -59184018 + (TG)n Simple_repeat Simple_repeat 2 46 0 615 280 86 64 chr1 183480380 183481019 -59183334 + L1MEc LINE L1 1541 2239 -4372 474 286 77 15 chr1 183481030 183481355 -59182998 + L1M4 LINE L1 4144 4488 -1658 1344 234 53 105 chr1 183481382 183481581 -59182772 + L1P4 LINE L1 4690 4898 -1267 1930 112 63 3 chr1 183481581 183481866 -59182487 - AluSq SINE Alu -8 305 4 1344 234 53 105 chr1 183481866 183481879 -59182474 + L1P4 LINE L1 4898 4910 -1255 2298 86 3 3 chr1 183481879 183482183 -59182170 - AluSx SINE Alu -8 304 1 1344 234 53 105 chr1 183482183 183482851 -59181502 + L1P4 LINE L1 4910 5488 -677 2455 68 0 3 chr1 183482851 183483161 -59181192 + AluY SINE Alu 1 309 -2 1344 234 53 105 chr1 183483161 183483442 -59180911 + L1P4 LINE L1 5488 5782 -383 362 266 59 44 chr1 183483464 183483686 -59180667 + L1ME2 LINE L1 5740 5974 -196 21 57 0 0 chr1 183484814 183484849 -59179504 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr1 183485418 183485452 -59178901 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr1 183486747 183486770 -59177583 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 183487404 183487433 -59176920 + AT_rich Low_complexity Low_complexity 1 29 0 292 353 38 25 chr1 183487546 183487784 -59176569 - HERVL LTR ERVL -730 4924 4684 570 370 49 9 chr1 183487835 183488391 -59175962 - HERVL LTR ERVL -1121 4643 4025 233 57 29 0 chr1 183488480 183488515 -59175838 + (TA)n Simple_repeat Simple_repeat 2 37 0 243 158 0 0 chr1 183488847 183488885 -59175468 - MLT2B1 LTR ERVL 0 515 478 384 130 0 0 chr1 183488885 183488954 -59175399 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1938 185 31 3 chr1 183488956 183489308 -59175045 - MLT2B1 LTR ERVL -158 362 1 1245 220 8 4 chr1 183489534 183489793 -59174560 + AluJo SINE Alu 23 282 -30 231 304 0 0 chr1 183489798 183489854 -59174499 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 294 328 61 65 chr1 183490102 183490349 -59174004 - HERVL LTR ERVL -3219 2435 2190 406 255 33 82 chr1 183491466 183491650 -59172703 + LTR41 LTR ERVL 1 175 -598 224 98 0 24 chr1 183492625 183492666 -59171687 + (TG)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr1 183493379 183493415 -59170938 + AT_rich Low_complexity Low_complexity 1 36 0 435 303 39 39 chr1 183494262 183494470 -59169883 + MLT1L LTR MaLR 37 244 -371 23 54 0 0 chr1 183494884 183494921 -59169432 + AT_rich Low_complexity Low_complexity 1 37 0 563 241 105 37 chr1 183495057 183495248 -59169105 - L1MA8 LINE L1 -140 6151 5948 494 179 14 7 chr1 183495243 183495371 -59168982 + L1MA8 LINE L1 6161 6287 -4 * 336 371 100 29 chr1 183495601 183496051 -59168302 - L2 LINE L2 -805 2509 2028 7198 94 5 1 chr1 183496345 183498124 -59166229 - L1PA7 LINE L1 -8 6146 4355 12358 95 9 3 chr1 183498124 183499935 -59164418 + L1PA7 LINE L1 2519 4341 -1805 262 294 73 0 chr1 183500261 183500370 -59163983 - L1ME LINE L1 -291 5879 5763 307 333 139 0 chr1 183500709 183500853 -59163500 - MIR SINE MIR -73 189 26 24 0 0 0 chr1 183501572 183501596 -59162757 + AT_rich Low_complexity Low_complexity 1 24 0 2177 115 0 7 chr1 183503485 183503789 -59160564 - AluSx SINE Alu -10 302 1 2077 99 13 35 chr1 183506068 183506382 -59157971 - AluSq SINE Alu 0 313 7 216 67 0 0 chr1 183507343 183507373 -59156980 + (TA)n Simple_repeat Simple_repeat 1 30 0 1239 229 49 5 chr1 183507447 183507892 -59156461 + MLT1D LTR MaLR 5 502 -3 1760 189 49 70 chr1 183509000 183509514 -59154839 - MLT1D LTR MaLR -2 503 1 424 200 200 0 chr1 183510452 183510607 -59153746 + MER53 DNA DNA 1 186 -3 460 310 94 6 chr1 183512296 183512467 -59151886 - MIR SINE MIR -30 232 47 25 31 0 0 chr1 183512794 183512826 -59151527 + AT_rich Low_complexity Low_complexity 1 32 0 219 139 0 0 chr1 183513119 183513155 -59151198 + (TG)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr1 183513617 183513642 -59150711 + AT_rich Low_complexity Low_complexity 1 25 0 1099 255 104 45 chr1 183513703 183514193 -59150160 - LTR40a LTR ERVL 0 519 1 324 256 0 12 chr1 183514485 183514567 -59149786 - MIR SINE MIR -104 158 78 211 265 118 52 chr1 183514826 183514962 -59149391 + MIR SINE MIR 118 262 0 2308 42 0 21 chr1 183515796 183516111 -59148242 - AluY SINE Alu 0 309 1 300 203 16 0 chr1 183516112 183516176 -59148177 + MER58B DNA MER1_type 172 236 -105 2033 126 3 0 chr1 183516180 183516466 -59147887 + AluSx SINE Alu 5 291 -21 370 218 39 0 chr1 183516478 183516556 -59147797 + MER58B DNA MER1_type 230 310 -31 337 312 24 16 chr1 183517408 183517533 -59146820 + L1MEc LINE L1 770 895 -5501 479 278 81 12 chr1 183517563 183517908 -59146445 + L1MEc LINE L1 974 1342 -5054 596 267 41 18 chr1 183517960 183518181 -59146172 + L1M4 LINE L1 4020 4245 -1901 614 262 81 0 chr1 183518182 183518354 -59145999 - MER58A DNA MER1_type 0 224 39 1084 196 25 97 chr1 183518507 183518828 -59145525 - MLT1C LTR MaLR -167 300 3 5525 234 47 47 chr1 183518836 183519765 -59144588 + L1M3 LINE L1 3370 4297 -1883 285 109 0 0 chr1 183519765 183519811 -59144542 + (CA)n Simple_repeat Simple_repeat 2 47 0 5525 234 47 47 chr1 183519811 183520974 -59143379 + L1M3 LINE L1 4297 5453 -727 22 0 0 0 chr1 183521079 183521101 -59143252 + AT_rich Low_complexity Low_complexity 1 22 0 2073 117 44 18 chr1 183521146 183521160 -59143193 - Tigger3b DNA MER2_type -2294 734 722 1911 156 37 3 chr1 183521160 183521513 -59142840 - L1MA5 LINE L1 -1 6299 5935 2073 117 44 18 chr1 183521513 183521884 -59142469 - Tigger3b DNA MER2_type -2306 722 339 1147 47 61 0 chr1 183521910 183522058 -59142295 + L1P2 LINE L1 5515 5671 -483 * 1676 163 82 8 chr1 183522056 183522412 -59141941 - L1MA5 LINE L1 -346 5954 5573 5626 151 34 142 chr1 183522417 183524204 -59140149 - L1MA5 LINE L1 -1218 4928 3266 893 215 27 43 chr1 183524274 183524358 -59139995 + MLT1D LTR MaLR 252 336 -169 240 35 0 0 chr1 183524358 183524387 -59139966 + (CAA)n Simple_repeat Simple_repeat 2 30 0 893 215 27 43 chr1 183524387 183524558 -59139795 + MLT1D LTR MaLR 336 503 -2 207 349 23 0 chr1 183524647 183524733 -59139620 + MIR SINE MIR 165 252 -10 * 326 331 16 24 chr1 183524731 183524855 -59139498 - L2 LINE L2 -1 3312 3190 426 260 160 59 chr1 183524866 183525085 -59139268 - MIR SINE MIR -4 258 18 21 0 0 0 chr1 183525378 183525399 -59138954 + AT_rich Low_complexity Low_complexity 1 21 0 2429 76 0 3 chr1 183525484 183525785 -59138568 - AluSc SINE Alu -9 300 1 2038 108 7 30 chr1 183526024 183526329 -59138024 - AluSx SINE Alu -14 298 1 27 0 0 0 chr1 183527637 183527664 -59136689 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr1 183527807 183527842 -59136511 + AT_rich Low_complexity Low_complexity 1 35 0 213 268 0 18 chr1 183527914 183527970 -59136383 + L2 LINE L2 3183 3237 -76 24 0 0 0 chr1 183528099 183528123 -59136230 + AT_rich Low_complexity Low_complexity 1 24 0 227 338 202 5 chr1 183528974 183529187 -59135166 + MIR SINE MIR 8 262 0 392 314 8 0 chr1 183529826 183529944 -59134409 - MLT1L LTR MaLR -80 535 417 7349 76 145 1 chr1 183530097 183531165 -59133188 - MER11B LTR ERVK -14 1222 1 288 290 60 10 chr1 183531171 183531271 -59133082 - MLT1L LTR MaLR -417 198 94 234 281 98 37 chr1 183531625 183531789 -59132564 - L2 LINE L2 -129 3184 3011 413 314 29 0 chr1 183532642 183532747 -59131606 + L2 LINE L2 3197 3304 -9 1228 145 72 0 chr1 183533188 183533437 -59130916 + L1MA7 LINE L1 6025 6291 0 283 365 75 47 chr1 183533505 183533867 -59130486 + L3 LINE CR1 1165 1536 -41 484 255 44 39 chr1 183534401 183534605 -59129748 + L1ME3A LINE L1 5961 6165 -5 3430 222 10 10 chr1 183534749 183535554 -59128799 + L1P LINE L1 4313 5117 -1029 265 257 7 81 chr1 183535611 183535747 -59128606 - MER77 LTR ERV1 -411 194 69 217 250 44 29 chr1 183535786 183535854 -59128499 + L2 LINE L2 3189 3257 -15 1900 172 105 18 chr1 183537725 183538115 -59126238 - MSTB LTR MaLR -2 424 1 889 223 103 10 chr1 183538290 183538582 -59125771 - MER45B DNA AcHobo -9 1031 713 734 315 41 70 chr1 183538690 183539377 -59124976 - MER45C DNA AcHobo -172 781 8 * 1103 248 77 23 chr1 183539374 183539684 -59124669 + MLT1E3 LTR MaLR 296 622 -2 362 338 71 48 chr1 183540824 183541593 -59122760 - L1ME3A LINE L1 -304 5866 5081 680 245 34 0 chr1 183541595 183541742 -59122611 + FRAM SINE Alu 2 153 -23 23 0 0 0 chr1 183543079 183543102 -59121251 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr1 183543156 183543182 -59121171 + (TG)n Simple_repeat Simple_repeat 2 27 0 2141 218 19 68 chr1 183543221 183543790 -59120563 - MER87 LTR ERV1 0 541 1 330 26 0 0 chr1 183544729 183544738 -59119615 + (TG)n Simple_repeat Simple_repeat 1 48 0 330 26 0 0 chr1 183544738 183544777 -59119576 + (TG)n Simple_repeat Simple_repeat 2 40 0 564 299 146 7 chr1 183545826 183546120 -59118233 - MLT1I LTR MaLR 0 409 75 26 30 0 0 chr1 183546778 183546811 -59117542 + AT_rich Low_complexity Low_complexity 1 33 0 203 213 85 0 chr1 183547153 183547200 -59117153 + MIR SINE MIR 2 52 -210 28 79 0 0 chr1 183547640 183547703 -59116650 + AT_rich Low_complexity Low_complexity 1 63 0 1174 185 116 74 chr1 183547763 183548195 -59116158 + LTR7 LTR ERV1 1 450 0 1431 204 48 0 chr1 183548580 183548874 -59115479 + AluJb SINE Alu 1 308 -4 590 144 14 34 chr1 183548878 183549171 -59115182 + GA-rich Low_complexity Low_complexity 1 287 0 302 304 30 15 chr1 183549177 183549312 -59115041 + MER57B LTR ERV1 86 222 -212 3455 92 23 0 chr1 183549381 183549862 -59114491 - LTR14C LTR ERVK 0 587 96 4843 111 136 90 chr1 183549865 183551344 -59113009 - pTR5 LTR ERV1 0 2438 744 780 41 20 0 chr1 183551344 183551442 -59112911 - LTR14C LTR ERVK -487 100 1 335 308 62 0 chr1 183551444 183551590 -59112763 + MER57A LTR ERV1 249 403 0 781 304 43 63 chr1 183551590 183552100 -59112253 + L1MCc LINE L1 98 597 -5826 245 256 54 47 chr1 183552353 183552482 -59111871 + L1MCc LINE L1 2960 3089 -4033 885 259 99 67 chr1 183552493 183552738 -59111615 + L1MCc LINE L1 3324 3560 -3381 2318 109 0 0 chr1 183552738 183553050 -59111303 + AluSx SINE Alu 1 312 0 885 259 99 67 chr1 183553050 183553590 -59110763 + L1MCc LINE L1 3560 4134 -2807 1200 274 46 23 chr1 183553609 183554130 -59110223 + L1MCc LINE L1 4254 4786 -2155 22 0 0 0 chr1 183554174 183554196 -59110157 + AT_rich Low_complexity Low_complexity 1 22 0 2242 269 73 35 chr1 183554364 183554494 -59109859 - L1MEc LINE L1 -3970 2426 2302 1914 149 0 10 chr1 183554494 183554789 -59109564 - AluSx SINE Alu -20 292 1 2242 269 73 35 chr1 183554789 183555976 -59108377 - L1MEc LINE L1 -4094 2302 1059 31 96 0 0 chr1 183556866 183556960 -59107393 + AT_rich Low_complexity Low_complexity 1 94 0 185 360 52 12 chr1 183557157 183557329 -59107024 - MIR3 SINE MIR -27 181 3 1774 166 0 7 chr1 183557976 183558265 -59106088 + AluJo SINE Alu 3 289 -23 21 0 0 0 chr1 183558477 183558498 -59105855 + AT_rich Low_complexity Low_complexity 1 21 0 234 343 0 0 chr1 183559000 183559073 -59105280 - L2 LINE L2 -44 3269 3197 1763 172 3 3 chr1 183559669 183559954 -59104399 + AluJo SINE Alu 1 285 -27 3973 164 15 31 chr1 183560077 183560823 -59103530 + MER50 LTR ERV1 1 734 0 6175 154 34 9 chr1 183560823 183562548 -59101805 + MER50-int LTR ERV1 1 1848 -5357 * 16010 182 38 41 chr1 183562545 183565986 -59098367 + MER50-int LTR ERV1 2789 6220 -985 2222 154 8 8 chr1 183565964 183566327 -59098026 + MER50-int LTR ERV1 6840 7202 -3 * 3711 168 27 27 chr1 183566329 183567044 -59097309 + MER50 LTR ERV1 8 722 -12 231 233 45 104 chr1 183567203 183567405 -59096948 + MER67C LTR ERV1 55 244 -466 2110 110 7 0 chr1 183567800 183568090 -59096263 + AluSq SINE Alu 1 292 -21 1749 164 24 0 chr1 183568231 183568523 -59095830 + MER50 LTR ERV1 1 299 -573 3456 53 0 0 chr1 183569731 183570161 -59094192 + L1PA5 LINE L1 5725 6154 0 2835 164 60 5 chr1 183570559 183570904 -59093449 - L1PB4 LINE L1 0 6156 5767 276 30 0 0 chr1 183570904 183570937 -59093416 + (TA)n Simple_repeat Simple_repeat 1 33 0 2835 164 60 5 chr1 183570937 183571153 -59093200 - L1PB4 LINE L1 -389 5767 5564 4410 155 29 3 chr1 183571253 183573143 -59091210 - L1PBa LINE L1 -3019 3843 1852 6774 38 2 6 chr1 183573143 183573978 -59090375 - L1PA4 LINE L1 0 6155 5324 6227 150 17 2 chr1 183573978 183575045 -59089308 - L1PBa LINE L1 -5015 1848 766 23 0 0 0 chr1 183575608 183575631 -59088722 + AT_rich Low_complexity Low_complexity 1 23 0 1425 220 3 7 chr1 183575657 183575957 -59088396 - L1MB1 LINE L1 -64 6104 5806 255 125 0 0 chr1 183576060 183576100 -59088253 + (TA)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr1 183577002 183577033 -59087320 + AT_rich Low_complexity Low_complexity 1 31 0 27 96 0 0 chr1 183577063 183577146 -59087207 + AT_rich Low_complexity Low_complexity 1 83 0 942 310 58 47 chr1 183577467 183577954 -59086399 - L1MCc LINE L1 -5149 1274 783 23 0 0 0 chr1 183578132 183578155 -59086198 + AT_rich Low_complexity Low_complexity 1 23 0 814 345 22 17 chr1 183578331 183578795 -59085558 - L1MCc LINE L1 -5930 493 28 1384 244 41 53 chr1 183578908 183579417 -59084936 + MLT1D LTR MaLR 1 503 -2 36 70 0 0 chr1 183579478 183579549 -59084804 + AT_rich Low_complexity Low_complexity 1 71 0 7547 153 40 6 chr1 183579608 183580951 -59083402 - Tigger1 DNA MER2_type 0 2418 1031 3369 130 17 26 chr1 183580949 183581478 -59082875 + MER1A DNA MER1_type 6 529 0 * 4011 151 36 29 chr1 183581479 183582381 -59081972 - Tigger1 DNA MER2_type -1399 1019 1 2134 322 64 17 chr1 183582388 183583542 -59080811 - L1MEc LINE L1 -5159 1237 30 25 75 0 0 chr1 183583894 183583947 -59080406 + AT_rich Low_complexity Low_complexity 1 53 0 25 0 0 0 chr1 183584176 183584201 -59080152 + AT_rich Low_complexity Low_complexity 1 25 0 1533 248 59 9 chr1 183584307 183584944 -59079409 - L1M LINE L1 -743 5403 4763 24 0 0 0 chr1 183585224 183585248 -59079105 + AT_rich Low_complexity Low_complexity 1 24 0 693 274 111 22 chr1 183585412 183585783 -59078570 + LTR40c LTR ERVL 3 396 -66 21 0 0 0 chr1 183586150 183586171 -59078182 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 183586614 183586653 -59077700 + AT_rich Low_complexity Low_complexity 1 39 0 210 270 61 35 chr1 183587146 183587261 -59077092 - MIR SINE MIR 0 262 145 22 0 0 0 chr1 183588232 183588254 -59076099 + AT_rich Low_complexity Low_complexity 1 22 0 2196 210 32 4 chr1 183588910 183589376 -59074977 - LTR42 LTR ERVL -16 479 1 354 254 23 77 chr1 183589543 183589673 -59074680 - MIR SINE MIR -71 191 69 21 0 0 0 chr1 183590491 183590512 -59073841 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr1 183590915 183590945 -59073408 + (A)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr1 183591280 183591315 -59073038 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr1 183591788 183591839 -59072514 + AT_rich Low_complexity Low_complexity 1 51 0 612 299 83 8 chr1 183592653 183592907 -59071446 - MER20B DNA MER1_type -420 363 91 22 0 0 0 chr1 183594183 183594205 -59070148 + AT_rich Low_complexity Low_complexity 1 22 0 358 295 19 19 chr1 183594701 183594858 -59069495 + MIR SINE MIR 18 172 -36 431 265 0 90 chr1 183594886 183595052 -59069301 + MER82 DNA MER2_type 310 460 -193 244 271 59 34 chr1 183595146 183595264 -59069089 - L1M4 LINE L1 -2280 3866 3746 472 195 315 0 chr1 183595271 183595420 -59068933 - MER58B DNA MER1_type -145 196 1 206 353 0 15 chr1 183595434 183595502 -59068851 + MER5A DNA MER1_type 45 121 -67 4587 166 28 45 chr1 183595515 183596492 -59067861 - L1MD3 LINE L1 -19 8256 5635 563 243 201 59 chr1 183596507 183596743 -59067610 - HAL1 LINE L1 0 2507 2306 369 0 0 0 chr1 183596743 183596784 -59067569 + (CA)n Simple_repeat Simple_repeat 2 42 0 563 243 201 59 chr1 183596784 183597069 -59067284 - HAL1 LINE L1 -201 2306 1912 8013 269 61 24 chr1 183597713 183601561 -59062792 - L1MD3 LINE L1 -875 5551 1441 347 56 19 0 chr1 183601561 183601615 -59062738 + (TG)n Simple_repeat Simple_repeat 2 56 0 8013 269 61 24 chr1 183601615 183601765 -59062588 - L1MD3 LINE L1 -4985 1441 1298 3288 124 9 9 chr1 183601774 183602308 -59062045 - L1MA1 LINE L1 0 7721 7188 665 241 241 5 chr1 183602308 183602511 -59061842 - AluSx SINE Alu -23 289 39 9995 191 25 12 chr1 183602511 183604049 -59060304 - L1MA1 LINE L1 -517 7204 5610 813 11 0 0 chr1 183604049 183604141 -59060212 - L1PA5 LINE L1 -9 6145 6054 9995 191 25 12 chr1 183604141 183605310 -59059043 - L1MA1 LINE L1 -2111 5610 4458 6779 219 39 11 chr1 183605343 183605513 -59058840 - L1MA1 LINE L1 -6064 1501 1337 1788 140 53 63 chr1 183605513 183605892 -59058461 + THE1C LTR MaLR 1 375 0 6779 219 39 11 chr1 183605892 183607168 -59057185 - L1MA1 LINE L1 -6228 1337 15 372 161 118 0 chr1 183607170 183607210 -59057143 - L1MD3 LINE L1 -5182 1244 1210 180 77 0 0 chr1 183607210 183607236 -59057117 + (TG)n Simple_repeat Simple_repeat 2 27 0 372 161 118 0 chr1 183607236 183607288 -59057065 - L1MD3 LINE L1 -5216 1210 1141 3635 196 76 59 chr1 183607303 183607893 -59056460 - L1MD3 LINE L1 -5507 919 308 1828 150 17 3 chr1 183607893 183608187 -59056166 - AluSx SINE Alu -14 298 1 3635 196 76 59 chr1 183608187 183608480 -59055873 - L1MD3 LINE L1 -6118 308 21 494 280 16 6 chr1 183608494 183608676 -59055677 - L1MCa LINE L1 -2391 4253 4070 * 7382 98 11 2 chr1 183608671 183609768 -59054585 - L1P LINE L1 -2147 3999 2893 1735 291 94 44 chr1 183609763 183610943 -59053410 - L1MDa LINE L1 -5090 1450 17 * 737 229 217 6 chr1 183610944 183611364 -59052989 - L1MCa LINE L1 -3950 2694 2275 27 0 0 0 chr1 183612791 183612818 -59051535 + AT_rich Low_complexity Low_complexity 1 27 0 29 47 0 0 chr1 183613152 183613195 -59051158 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr1 183613367 183613392 -59050961 + AT_rich Low_complexity Low_complexity 1 25 0 2340 58 7 23 chr1 183614531 183614840 -59049513 + AluY SINE Alu 3 306 -5 21 36 0 0 chr1 183617218 183617246 -59047107 + AT_rich Low_complexity Low_complexity 1 28 0 186 133 0 0 chr1 183617602 183617632 -59046721 + (A)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr1 183618003 183618029 -59046324 + (T)n Simple_repeat Simple_repeat 1 26 0 319 202 131 24 chr1 183618895 183618979 -59045374 - MLT1B LTR MaLR -297 93 1 1394 178 66 54 chr1 183619193 183619525 -59044828 + MER44D DNA MER2_type 1 606 -3 550 270 6 0 chr1 183619534 183619697 -59044656 - L1M4 LINE L1 -3699 2945 2782 2760 250 48 34 chr1 183619805 183621304 -59043049 - L1M4 LINE L1 -3850 2794 1181 1503 159 76 10 chr1 183621304 183621594 -59042759 + AluJb SINE Alu 1 309 -3 2760 250 48 34 chr1 183621594 183621737 -59042616 - L1M4 LINE L1 -5463 1181 1042 12480 162 45 48 chr1 183621743 183624280 -59040073 - Tigger4(Zombi) DNA MER2_type 0 2731 205 1202 296 90 51 chr1 183624340 183625237 -59039116 - L1M4 LINE L1 -5516 1026 95 857 210 24 0 chr1 183625256 183625423 -59038930 - FAM SINE Alu -4 171 1 28 48 0 0 chr1 183625585 183625627 -59038726 + AT_rich Low_complexity Low_complexity 1 42 0 1021 170 46 8 chr1 183625874 183626112 -59038241 - L1M2 LINE L1 -653 5659 5353 524 270 27 0 chr1 183626109 183626257 -59038096 + L1M2 LINE L1 5637 5788 -524 * 310 174 16 58 chr1 183626271 183626392 -59037961 + (TATAA)n Simple_repeat Simple_repeat 1 116 0 1783 236 70 20 chr1 183626470 183627016 -59037337 + L1MA9 LINE L1 5702 6274 -38 23 33 0 0 chr1 183627307 183627337 -59037016 + AT_rich Low_complexity Low_complexity 1 30 0 447 113 0 0 chr1 183627421 183627492 -59036861 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1228 217 23 80 chr1 183628059 183628446 -59035907 - MLT1A1 LTR MaLR 0 365 1 1964 185 40 74 chr1 183629533 183630076 -59034277 + MER41B LTR ERV1 100 469 -9 37 62 0 0 chr1 183630704 183630769 -59033584 + AT_rich Low_complexity Low_complexity 1 65 0 218 222 0 0 chr1 183630962 183631007 -59033346 + A-rich Low_complexity Low_complexity 1 45 0 3454 266 79 31 chr1 183631586 183633611 -59030742 + L1MC/D LINE L1 3135 5304 -1055 1981 197 13 0 chr1 183633611 183633996 -59030357 - MLT1B LTR MaLR 0 390 1 3454 266 79 31 chr1 183633996 183634334 -59030019 + L1MC/D LINE L1 5304 5624 -735 1650 315 104 29 chr1 183634698 183635128 -59029225 + L2 LINE L2 1025 1421 -1893 1281 197 126 41 chr1 183635128 183635493 -59028860 - MSTD LTR MaLR 0 396 1 1650 315 104 29 chr1 183635493 183636026 -59028327 + L2 LINE L2 1421 2060 -1254 574 299 231 16 chr1 183636184 183636492 -59027861 + L2 LINE L2 2079 2452 -862 23 33 0 0 chr1 183637135 183637165 -59027188 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr1 183638128 183638150 -59026203 + AT_rich Low_complexity Low_complexity 1 22 0 223 298 128 35 chr1 183638875 183639016 -59025337 + L2 LINE L2 2419 2572 -742 2234 262 28 44 chr1 183640742 183641422 -59022931 + L1MCa LINE L1 144 812 -5752 2037 114 0 13 chr1 183641459 183641787 -59022566 + AluSc SINE Alu 1 309 0 247 313 0 0 chr1 183641814 183641894 -59022459 + L1MCa LINE L1 739 818 -5227 13348 173 25 34 chr1 183641902 183646812 -59017541 + L1MA3 LINE L1 2835 7724 0 216 97 0 0 chr1 183647109 183647140 -59017213 + (TG)n Simple_repeat Simple_repeat 2 32 0 239 243 27 14 chr1 183647277 183647351 -59017002 + MER20 DNA MER1_type 129 203 -16 23 0 0 0 chr1 183647922 183647945 -59016408 + AT_rich Low_complexity Low_complexity 1 23 0 1728 136 68 7 chr1 183647945 183648240 -59016113 + AluSp SINE Alu 1 313 0 602 253 47 12 chr1 183648482 183648652 -59015701 + FRAM SINE Alu 1 176 0 396 0 0 0 chr1 183648676 183648720 -59015633 + (CA)n Simple_repeat Simple_repeat 2 45 0 2283 99 0 0 chr1 183648908 183649210 -59015143 + AluSx SINE Alu 1 302 -10 241 323 63 8 chr1 183650280 183650407 -59013946 - MIR SINE MIR -80 182 49 305 283 59 73 chr1 183650908 183651127 -59013226 + MIR SINE MIR 47 262 0 320 333 51 17 chr1 183651465 183651759 -59012594 - L1MEc LINE L1 -4390 2006 1703 8430 181 21 39 chr1 183651827 183653611 -59010742 - L1P LINE L1 -1777 4369 2618 2093 113 3 7 chr1 183653611 183653911 -59010442 - AluSq SINE Alu -11 302 4 8430 181 21 39 chr1 183653911 183654019 -59010334 - L1P LINE L1 -3528 2618 2510 2483 149 66 5 chr1 183654028 183654836 -59009517 + L1P4 LINE L1 4873 5720 -441 1240 278 78 16 chr1 183654994 183655365 -59008988 + MLT1E2 LTR MaLR 215 608 -18 182 395 0 0 chr1 183656503 183656579 -59007774 + L2 LINE L2 2278 2353 -961 22 56 0 0 chr1 183656710 183656746 -59007607 + AT_rich Low_complexity Low_complexity 1 36 0 1523 211 4 0 chr1 183656865 183657140 -59007213 - AluJo SINE Alu -34 278 3 23 0 0 0 chr1 183657147 183657170 -59007183 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 183658437 183658461 -59005892 + AT_rich Low_complexity Low_complexity 1 24 0 213 94 0 0 chr1 183659140 183659172 -59005181 + (CA)n Simple_repeat Simple_repeat 1 32 0 25 90 0 0 chr1 183659626 183659693 -59004660 + AT_rich Low_complexity Low_complexity 1 67 0 276 306 8 8 chr1 183660022 183660146 -59004207 + (TA)n Simple_repeat Simple_repeat 1 124 0 288 359 77 62 chr1 183660338 183660820 -59003533 + L2 LINE L2 25 513 -2801 213 288 0 0 chr1 183661258 183661317 -59003036 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 2025 166 39 38 chr1 183662410 183662960 -59001393 - MLT2A2 LTR ERVL 0 554 1 2106 104 3 0 chr1 183663095 183663382 -59000971 + AluSx SINE Alu 1 288 -24 300 53 0 0 chr1 183663411 183663449 -59000904 + (GA)n Simple_repeat Simple_repeat 1 38 0 359 344 16 0 chr1 183663635 183663757 -59000596 + MIR SINE MIR 9 132 -130 705 340 93 0 chr1 183664200 183664539 -58999814 - L2 LINE L2 -303 3010 2642 295 214 57 0 chr1 183664579 183664649 -58999704 - MER94 DNA DNA -59 75 2 180 287 85 21 chr1 183664649 183664743 -58999610 - L2 LINE L2 -657 2657 2558 186 133 0 0 chr1 183664917 183664947 -58999406 + (CATA)n Simple_repeat Simple_repeat 2 31 0 31 99 0 0 chr1 183665004 183665105 -58999248 + AT_rich Low_complexity Low_complexity 1 101 0 457 280 115 72 chr1 183665885 183666328 -58998025 + L2 LINE L2 2084 2545 -769 244 402 62 48 chr1 183666612 183667050 -58997303 + L2 LINE L2 2825 3268 -4 21 36 0 0 chr1 183668174 183668202 -58996151 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 183669288 183669309 -58995044 + AT_rich Low_complexity Low_complexity 1 21 0 1454 125 40 94 chr1 183670425 183670776 -58993577 - L1MA7 LINE L1 0 6291 5960 21 36 0 0 chr1 183671026 183671054 -58993299 + AT_rich Low_complexity Low_complexity 1 28 0 1346 231 93 101 chr1 183671573 183672211 -58992142 - LTR19C LTR ERV1 -2 777 145 1952 90 0 4 chr1 183672211 183672467 -58991886 + AluSx SINE Alu 38 292 -20 1346 231 93 101 chr1 183672467 183672598 -58991755 - LTR19C LTR ERV1 -634 145 14 26 30 0 0 chr1 183673546 183673579 -58990774 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr1 183674659 183674700 -58989653 + AT_rich Low_complexity Low_complexity 1 41 0 595 282 100 51 chr1 183674783 183675315 -58989038 + L1M4 LINE L1 2898 3455 -2691 226 309 15 0 chr1 183675564 183675632 -58988721 - L2 LINE L2 -623 2691 2623 1229 220 35 7 chr1 183677090 183677372 -58986981 + MER6 DNA MER2_type 65 354 -511 4322 190 11 2 chr1 183678225 183679019 -58985334 + MER6 DNA MER2_type 65 865 0 382 262 84 65 chr1 183679022 183679236 -58985117 - MER39 LTR ERV1 -184 523 306 246 200 0 0 chr1 183679262 183679307 -58985046 - MER34 LTR ERV1 -491 51 7 216 0 0 0 chr1 183680558 183680582 -58983771 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 67 0 0 chr1 183680692 183680737 -58983616 + AT_rich Low_complexity Low_complexity 1 45 0 504 276 77 11 chr1 183680742 183680923 -58983430 - MIR SINE MIR -44 218 26 22 0 0 0 chr1 183681013 183681035 -58983318 + AT_rich Low_complexity Low_complexity 1 22 0 1403 194 14 11 chr1 183681444 183681722 -58982631 + AluJo SINE Alu 2 280 -32 380 20 0 20 chr1 183681726 183681776 -58982577 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 24 77 0 0 chr1 183682028 183682080 -58982273 + AT_rich Low_complexity Low_complexity 1 52 0 1969 177 16 3 chr1 183682483 183682867 -58981486 - L1PA16 LINE L1 -1322 4824 4436 1837 211 37 2 chr1 183682870 183683306 -58981047 + L1PA16 LINE L1 4845 5295 -851 312 91 0 0 chr1 183683508 183683552 -58980801 + (T)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr1 183683908 183683936 -58980417 + AT_rich Low_complexity Low_complexity 1 28 0 1270 232 7 3 chr1 183684139 183684442 -58979911 + L1PA16 LINE L1 5831 6151 -4 3300 181 14 66 chr1 183684601 183685323 -58979030 - L1MA8 LINE L1 -25 6266 5586 2235 115 3 0 chr1 183685323 183685628 -58978725 - AluSq SINE Alu -5 308 3 3300 181 14 66 chr1 183685628 183685743 -58978610 - L1MA8 LINE L1 -705 5586 5467 31 26 0 0 chr1 183686652 183686690 -58977663 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr1 183687621 183687644 -58976709 + (GA)n Simple_repeat Simple_repeat 2 24 0 2207 102 7 0 chr1 183687797 183688090 -58976263 + AluSg SINE Alu 2 296 -14 234 0 0 0 chr1 183688154 183688180 -58976173 + (CA)n Simple_repeat Simple_repeat 1 26 0 473 127 13 0 chr1 183689409 183689488 -58974865 - MADE1 DNA Mariner 0 80 1 422 283 161 6 chr1 183690808 183690988 -58973365 + L2 LINE L2 3091 3298 -15 31 58 0 0 chr1 183691324 183691376 -58972977 + AT_rich Low_complexity Low_complexity 1 52 0 315 322 155 15 chr1 183692180 183692444 -58971909 + L2 LINE L2 3003 3303 -10 1924 118 0 0 chr1 183692444 183692715 -58971638 + AluSg SINE Alu 1 271 -39 306 50 0 0 chr1 183692715 183692755 -58971598 + (TC)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr1 183692755 183692780 -58971573 + AT_rich Low_complexity Low_complexity 1 25 0 231 191 105 124 chr1 183692860 183692965 -58971388 - MLT1G1 LTR MaLR -6 589 487 291 308 15 31 chr1 183693181 183693311 -58971042 - MLT1H LTR MaLR -392 157 30 434 345 50 31 chr1 183693867 183694128 -58970225 + L2 LINE L2 2456 2721 -593 306 226 86 0 chr1 183694133 183694226 -58970127 + L1ME1 LINE L1 6059 6159 -7 199 304 22 43 chr1 183694233 183694325 -58970028 + L2 LINE L2 2699 2788 -526 239 310 142 69 chr1 183694382 183694643 -58969710 + L2 LINE L2 3033 3312 -1 330 26 0 0 chr1 183695493 183695532 -58968821 + (TG)n Simple_repeat Simple_repeat 2 40 0 194 57 57 0 chr1 183695725 183695760 -58968593 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 4206 52 6 4 chr1 183695761 183696302 -58968051 - L1PA8 LINE L1 -8 6164 5623 860 332 27 3 chr1 183696426 183696757 -58967596 - L1MEc LINE L1 -5766 630 292 2383 68 0 3 chr1 183697086 183697397 -58966956 - AluY SINE Alu -1 310 1 235 292 56 49 chr1 183698090 183698234 -58966119 - MIR SINE MIR -70 192 48 1584 195 36 23 chr1 183702086 183702471 -58961882 + MLT1B LTR MaLR 1 390 0 1543 111 0 9 chr1 183702578 183702795 -58961558 - AluY SINE Alu -55 256 42 253 159 175 16 chr1 183703046 183703109 -58961244 + AluSg/x SINE Alu 119 191 -111 335 261 118 13 chr1 183703119 183703272 -58961081 + L2 LINE L2 2456 2624 -690 195 42 0 0 chr1 183703280 183703304 -58961049 + (TC)n Simple_repeat Simple_repeat 2 25 0 232 158 35 0 chr1 183703304 183703361 -58960992 + (TA)n Simple_repeat Simple_repeat 1 59 0 25 31 0 0 chr1 183703397 183703429 -58960924 + AT_rich Low_complexity Low_complexity 1 32 0 447 376 49 4 chr1 183703518 183703744 -58960609 - MIR SINE MIR -21 241 6 25 75 0 0 chr1 183703786 183703839 -58960514 + AT_rich Low_complexity Low_complexity 1 53 0 2692 215 84 30 chr1 183703850 183704678 -58959675 + L1MC2 LINE L1 5463 6335 -9 372 211 14 0 chr1 183705066 183705137 -58959216 - Tigger5 DNA MER2_type -1 2322 2251 22 35 0 0 chr1 183705577 183705606 -58958747 + AT_rich Low_complexity Low_complexity 1 29 0 253 352 113 0 chr1 183706845 183706987 -58957366 + MIR SINE MIR 32 189 -73 44 20 0 0 chr1 183707010 183707061 -58957292 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr1 183707227 183707249 -58957104 + AT_rich Low_complexity Low_complexity 1 22 0 2671 127 13 2 chr1 183707285 183707734 -58956619 - L1MA2 LINE L1 0 6304 5851 372 316 36 0 chr1 183707734 183707873 -58956480 - MLT1H LTR MaLR -1 548 405 751 237 0 11 chr1 183707913 183708103 -58956250 - L1MB8 LINE L1 0 6178 5991 503 225 37 42 chr1 183708150 183708341 -58956012 - L1MA5 LINE L1 -186 6114 5925 * 3635 144 30 13 chr1 183708337 183709014 -58955339 + L1MA5 LINE L1 5224 5911 -380 433 290 76 61 chr1 183709076 183709308 -58955045 - MLT1H LTR MaLR -258 291 13 350 327 59 4 chr1 183709320 183709449 -58954904 - MIR SINE MIR -74 134 22 28 29 0 0 chr1 183709639 183709674 -58954679 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 183709687 183709717 -58954636 + AT_rich Low_complexity Low_complexity 1 30 0 698 219 17 56 chr1 183709854 183710032 -58954321 - MLT1E3 LTR MaLR -403 221 51 396 274 17 17 chr1 183710051 183710168 -58954185 - MLT2F LTR ERVL -546 117 1 1903 294 63 46 chr1 183710169 183711164 -58953189 - HERVL-F LTR ERVL -2 5652 4641 1800 137 8 101 chr1 183711185 183711550 -58952803 - MER1B DNA MER1_type -8 331 1 5654 258 39 27 chr1 183711552 183711813 -58952540 - HERVL-F LTR ERVL -1090 4674 4418 1818 155 0 29 chr1 183711813 183712122 -58952231 + AluSx SINE Alu 1 300 -12 5654 258 39 27 chr1 183712122 183713370 -58950983 - HERVL-F LTR ERVL -1346 4418 3147 233 159 23 0 chr1 183713399 183713443 -58950910 + MLT2F LTR ERVL 479 523 -140 240 383 47 20 chr1 183713529 183713678 -58950675 + L2 LINE L2 3116 3268 -4 652 135 60 53 chr1 183713778 183713911 -58950442 + L1MA3 LINE L1 6166 6299 -6 23 0 0 0 chr1 183713911 183713934 -58950419 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 183714023 183714045 -58950308 + AT_rich Low_complexity Low_complexity 1 22 0 2410 54 0 0 chr1 183714935 183715229 -58949124 - AluY SINE Alu -4 307 14 245 204 80 26 chr1 183716010 183716123 -58948230 - HAL1 LINE L1 -97 2410 2292 679 227 15 0 chr1 183716123 183716255 -58948098 - AluJo SINE Alu -176 136 3 602 306 108 21 chr1 183716382 183716945 -58947408 - HAL1 LINE L1 -362 2145 1534 1871 163 13 0 chr1 183716952 183717253 -58947100 - AluSx SINE Alu -7 305 1 595 314 78 5 chr1 183717967 183718158 -58946195 + MIR SINE MIR 18 222 -40 197 83 28 0 chr1 183718175 183718211 -58946142 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2016 112 0 58 chr1 183718995 183719307 -58945046 + AluSg SINE Alu 1 294 -16 2249 77 3 20 chr1 183719386 183719685 -58944668 + AluY SINE Alu 1 294 -17 301 241 109 58 chr1 183720712 183720886 -58943467 + L1M4 LINE L1 1169 1351 -5191 24 0 0 0 chr1 183721140 183721164 -58943189 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr1 183721656 183721704 -58942649 + AT_rich Low_complexity Low_complexity 1 48 0 425 309 85 39 chr1 183721791 183722238 -58942115 + L1ME LINE L1 5295 5769 -401 22 80 0 0 chr1 183722855 183722905 -58941448 + AT_rich Low_complexity Low_complexity 1 50 0 587 283 0 0 chr1 183723340 183723478 -58940875 - MER52A LTR ERV1 -1617 138 1 204 208 0 0 chr1 183724042 183724090 -58940263 + (TG)n Simple_repeat Simple_repeat 2 49 0 360 0 0 0 chr1 183724235 183724275 -58940078 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr1 183725499 183725535 -58938818 + AT_rich Low_complexity Low_complexity 1 36 0 39 84 0 0 chr1 183725601 183725696 -58938657 + AT_rich Low_complexity Low_complexity 1 95 0 232 363 99 19 chr1 183726353 183726565 -58937788 - MIR SINE MIR -9 253 25 485 307 33 49 chr1 183727786 183728359 -58935994 + L1ME3A LINE L1 4757 5320 -826 446 285 23 12 chr1 183728391 183728563 -58935790 + L1ME3A LINE L1 5391 5564 -600 910 273 76 37 chr1 183728594 183729033 -58935320 + L1ME3A LINE L1 5680 6134 -36 2113 102 3 3 chr1 183729557 183729841 -58934512 + AluSx SINE Alu 28 311 -1 628 294 71 9 chr1 183730053 183730264 -58934089 - MER58A DNA MER1_type 0 224 1 205 146 42 21 chr1 183730774 183730822 -58933531 + CT-rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr1 183731678 183731700 -58932653 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 183732564 183732593 -58931760 + AT_rich Low_complexity Low_complexity 1 29 0 3352 60 44 0 chr1 183733044 183733498 -58930855 + L1PA7 LINE L1 5681 6154 0 382 215 73 68 chr1 183733684 183733889 -58930464 - L1MC/D LINE L1 -2288 5520 5315 372 205 18 9 chr1 183734254 183734366 -58929987 + CT-rich Low_complexity Low_complexity 1 113 0 192 97 0 0 chr1 183734634 183734665 -58929688 + (GA)n Simple_repeat Simple_repeat 2 32 0 278 280 125 0 chr1 183734705 183734837 -58929516 - L1ME LINE L1 -508 5613 5470 29 60 0 0 chr1 183735032 183735082 -58929271 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr1 183735116 183735137 -58929216 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 183735894 183735920 -58928433 + AT_rich Low_complexity Low_complexity 1 26 0 1752 217 55 61 chr1 183735952 183736441 -58927912 - MER67D LTR ERV1 -28 486 1 2144 105 3 3 chr1 183736621 183736936 -58927417 + AluSp SINE Alu 1 315 0 30 27 0 0 chr1 183737289 183737326 -58927027 + AT_rich Low_complexity Low_complexity 1 37 0 196 315 92 39 chr1 183737527 183737657 -58926696 + MIR SINE MIR 74 210 -52 203 189 0 0 chr1 183738365 183738402 -58925951 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 28 0 0 0 chr1 183738551 183738579 -58925774 + AT_rich Low_complexity Low_complexity 1 28 0 5315 51 0 0 chr1 183738583 183739234 -58925119 - L1PA5 LINE L1 -6 6148 5498 198 389 96 0 chr1 183739462 183739629 -58924724 + MIR SINE MIR 8 190 -72 23 54 0 0 chr1 183739676 183739713 -58924640 + AT_rich Low_complexity Low_complexity 1 37 0 1510 202 3 19 chr1 183739727 183739912 -58924441 - AluSx SINE Alu 0 312 133 405 0 0 0 chr1 183739912 183739957 -58924396 + (TA)n Simple_repeat Simple_repeat 1 45 0 1510 202 3 19 chr1 183739957 183740088 -58924265 - AluSx SINE Alu -179 133 1 23 0 0 0 chr1 183740339 183740362 -58923991 + AT_rich Low_complexity Low_complexity 1 23 0 1507 224 135 64 chr1 183741259 183741835 -58922518 - MER52A LTR ERV1 -21 1734 589 283 302 108 8 chr1 183741828 183741957 -58922396 - MER52A LTR ERV1 -406 1349 1208 * 999 212 4 39 chr1 183741947 183742207 -58922146 - MER52A LTR ERV1 -137 499 308 3189 255 17 39 chr1 183742207 183743580 -58920773 - L1 LINE L1 -2860 3286 1956 29 28 0 0 chr1 183748025 183748061 -58916292 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 183748374 183748395 -58915958 + AT_rich Low_complexity Low_complexity 1 21 0 2592 213 62 19 chr1 183749591 183750230 -58914123 + L1MC1 LINE L1 4900 5601 -743 2051 146 0 0 chr1 183750230 183750538 -58913815 - AluY SINE Alu -3 308 1 2592 213 62 19 chr1 183750538 183750858 -58913495 + L1MC1 LINE L1 5601 5906 -438 1800 139 53 51 chr1 183750860 183751234 -58913119 - THE1C LTR MaLR 0 375 1 9208 149 43 7 chr1 183751235 183752760 -58911593 - THE1C-int LTR MaLR -1 1579 1 1878 137 61 17 chr1 183752760 183753119 -58911234 - THE1C LTR MaLR 0 375 1 1841 205 39 5 chr1 183753119 183753529 -58910824 + L1MC1 LINE L1 5904 6327 -6 947 114 0 0 chr1 183753529 183753667 -58910686 + L1MA2 LINE L1 6164 6303 -1 21 36 0 0 chr1 183753812 183753840 -58910513 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr1 183754092 183754134 -58910219 + AT_rich Low_complexity Low_complexity 1 42 0 1576 206 3 3 chr1 183754487 183754779 -58909574 + AluJo SINE Alu 21 312 0 479 295 131 57 chr1 183755075 183755411 -58908942 + L2 LINE L2 2824 3184 -129 223 254 18 0 chr1 183755876 183755931 -58908422 + CT-rich Low_complexity Low_complexity 1 56 0 28 79 0 0 chr1 183756544 183756607 -58907746 + AT_rich Low_complexity Low_complexity 1 63 0 573 278 88 79 chr1 183757372 183757855 -58906498 + MLT2E LTR ERVL 1 535 -93 959 213 40 10 chr1 183757859 183758061 -58906292 + MER58A DNA MER1_type 1 208 -16 27 0 0 0 chr1 183759303 183759330 -58905023 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr1 183760478 183760516 -58903837 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr1 183760812 183760844 -58903509 + AT_rich Low_complexity Low_complexity 1 32 0 1805 183 3 0 chr1 183761511 183761863 -58902490 + AluJo SINE Alu 1 353 0 25 51 0 0 chr1 183762902 183762941 -58901412 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr1 183763340 183763363 -58900990 + AT_rich Low_complexity Low_complexity 1 23 0 868 285 35 24 chr1 183763935 183764275 -58900078 + L1MCc LINE L1 19 362 -6061 752 300 129 16 chr1 183764731 183765003 -58899350 + L1MCc LINE L1 1032 1272 -5186 249 57 0 0 chr1 183765003 183765038 -58899315 + (CA)n Simple_repeat Simple_repeat 1 35 0 752 300 129 16 chr1 183765038 183765250 -58899103 + L1MCc LINE L1 1272 1571 -4887 207 0 0 0 chr1 183765342 183765365 -58898988 + (CA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr1 183765364 183765384 -58898969 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 2346 93 3 0 chr1 183765384 183765685 -58898668 - AluSp SINE Alu -9 304 3 260 250 38 76 chr1 183765725 183765961 -58898392 + L1MCc LINE L1 1825 2051 -4892 920 291 89 6 chr1 183765994 183766465 -58897888 + L1MCc LINE L1 2153 2662 -4460 820 247 90 37 chr1 183766599 183767032 -58897321 + MER69 DNA AcHobo 2055 2510 -16 296 321 91 43 chr1 183767035 183767222 -58897131 + L2 LINE L2 1719 1914 -1400 11923 181 22 11 chr1 183767225 183770212 -58894141 - L1PA12 LINE L1 -3459 4125 1106 498 307 117 45 chr1 183770224 183770514 -58893839 + L2 LINE L2 3003 3313 0 24 32 0 0 chr1 183770942 183770973 -58893380 + AT_rich Low_complexity Low_complexity 1 31 0 34 79 0 0 chr1 183771183 183771259 -58893094 + AT_rich Low_complexity Low_complexity 1 76 0 782 253 6 0 chr1 183772241 183772411 -58891942 + MLT1E3 LTR MaLR 1 171 -453 707 287 62 26 chr1 183772405 183772677 -58891676 + MLT1E3 LTR MaLR 342 623 -1 * 211 208 0 78 chr1 183772739 183772816 -58891537 + (CAGAGA)n Simple_repeat Simple_repeat 6 76 0 194 387 32 32 chr1 183773581 183773705 -58890648 + L2 LINE L2 3091 3214 -58 23 0 0 0 chr1 183773747 183773770 -58890583 + AT_rich Low_complexity Low_complexity 1 23 0 1727 253 45 4 chr1 183776005 183776555 -58887798 - L1PA16 LINE L1 -3227 2919 2347 7112 223 26 10 chr1 183776563 183777982 -58886371 + L1PA16 LINE L1 2937 4332 -1834 1851 128 4 0 chr1 183777982 183778240 -58886113 + AluSp SINE Alu 1 259 -54 7112 223 26 10 chr1 183778240 183779996 -58884357 + L1PA16 LINE L1 4332 6154 -12 188 67 33 0 chr1 183779997 183780027 -58884326 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 292 319 131 31 chr1 183780157 183780386 -58883967 - L1ME LINE L1 -419 5751 5500 1887 127 0 28 chr1 183780429 183780748 -58883605 - AluSx SINE Alu 0 311 1 10158 48 6 0 chr1 183780775 183782833 -58881520 - L1PA4 LINE L1 0 6155 4089 208 250 33 0 chr1 183783167 183783227 -58881126 + (TG)n Simple_repeat Simple_repeat 2 63 0 32 43 0 0 chr1 183783352 183783398 -58880955 + AT_rich Low_complexity Low_complexity 1 46 0 335 218 75 15 chr1 183783451 183783584 -58880769 - L1MEc LINE L1 -4677 1719 1579 686 328 71 44 chr1 183783585 183784344 -58880009 + L2 LINE L2 2531 3313 0 2442 167 2 2 chr1 183785174 183785593 -58878760 + L1PA16 LINE L1 5744 6162 -4 227 226 155 24 chr1 183785738 183785822 -58878531 + MLT1E LTR MaLR 69 163 -430 1453 261 20 31 chr1 183785940 183786331 -58878022 + MLT1E LTR MaLR 207 593 0 237 296 112 24 chr1 183786654 183786779 -58877574 - L2 LINE L2 0 3272 3137 480 286 181 5 chr1 183786900 183787099 -58877254 - MIR SINE MIR -17 245 12 232 217 29 29 chr1 183787837 183787906 -58876447 - L1MEc LINE L1 -5981 224 156 26 64 0 0 chr1 183788271 183788318 -58876035 + AT_rich Low_complexity Low_complexity 1 47 0 365 350 63 36 chr1 183788557 183788860 -58875493 - L1M4 LINE L1 -1155 4991 4681 29 60 0 0 chr1 183791029 183791079 -58873274 + AT_rich Low_complexity Low_complexity 1 50 0 239 374 88 6 chr1 183791102 183791284 -58873069 - MIR SINE MIR -64 198 2 307 241 133 0 chr1 183791342 183791425 -58872928 + L1MC4 LINE L1 6599 6692 -1350 2138 64 8 0 chr1 183791572 183791837 -58872516 + AluY SINE Alu 34 300 -11 495 309 209 34 chr1 183792121 183792800 -58871553 + L2 LINE L2 1917 2714 -600 21 0 0 0 chr1 183792846 183792867 -58871486 + AT_rich Low_complexity Low_complexity 1 21 0 203 403 20 55 chr1 183792888 183793089 -58871264 + L2 LINE L2 2759 2952 -362 260 284 11 32 chr1 183793196 183793291 -58871062 + CT-rich Low_complexity Low_complexity 2 94 0 538 218 10 47 chr1 183794217 183794410 -58869943 + MER53 DNA DNA 3 188 -1 2110 122 0 13 chr1 183794660 183794963 -58869390 - AluSq SINE Alu -14 299 1 806 238 0 6 chr1 183795570 183795742 -58868611 - MER58A DNA MER1_type -8 216 46 845 264 37 68 chr1 183796802 183797211 -58867142 - MSTD LTR MaLR 0 396 1 1719 158 3 11 chr1 183797417 183797701 -58866652 + AluSx SINE Alu 1 282 -30 22 35 0 0 chr1 183798158 183798187 -58866166 + AT_rich Low_complexity Low_complexity 1 29 0 1096 98 0 0 chr1 183798838 183798981 -58865372 - AluSc SINE Alu -12 297 155 1091 225 64 56 chr1 183799046 183799428 -58864925 + MER67C LTR ERV1 1 403 -253 186 43 0 0 chr1 183799931 183799954 -58864399 + (CA)n Simple_repeat Simple_repeat 2 24 0 3479 126 34 0 chr1 183800128 183800662 -58863691 - MER41A LTR ERV1 0 554 3 22 0 0 0 chr1 183801505 183801527 -58862826 + AT_rich Low_complexity Low_complexity 1 22 0 1687 172 54 18 chr1 183802009 183802340 -58862013 + MER61A LTR ERV1 1 343 0 372 77 0 0 chr1 183802747 183802799 -58861554 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 6883 38 2 5 chr1 183802984 183803836 -58860517 - L1PA3 LINE L1 0 6155 5306 * 7699 28 1 0 chr1 183803835 183804764 -58859589 + L1P LINE L1 4385 5316 -844 2100 125 3 10 chr1 183805614 183805927 -58858426 - AluSp SINE Alu -2 311 1 1414 156 7 42 chr1 183806044 183806332 -58858021 + L1PA16 LINE L1 5887 6164 -2 195 42 0 0 chr1 183806545 183806569 -58857784 + (TG)n Simple_repeat Simple_repeat 1 24 0 298 271 85 0 chr1 183806779 183806897 -58857456 - L1ME LINE L1 -686 5480 5353 1997 133 10 0 chr1 183807203 183807504 -58856849 - AluSc SINE Alu -5 304 1 200 262 267 19 chr1 183807860 183808066 -58856287 - L2 LINE L2 -2519 795 539 229 232 11 53 chr1 183808674 183808769 -58855584 + L1MC4 LINE L1 6613 6703 -1339 278 259 9 27 chr1 183808770 183808882 -58855471 + (TA)n Simple_repeat Simple_repeat 1 110 0 2187 110 0 13 chr1 183808928 183809238 -58855115 - AluSc SINE Alu -3 306 1 241 199 42 66 chr1 183809334 183809500 -58854853 + (TTATA)n Simple_repeat Simple_repeat 1 162 0 1344 224 17 7 chr1 183809538 183809828 -58854525 + AluJo SINE Alu 1 293 -19 21 57 0 0 chr1 183811158 183811193 -58853160 + AT_rich Low_complexity Low_complexity 1 35 0 438 346 123 0 chr1 183811344 183811555 -58852798 - MIR SINE MIR -24 238 2 21 57 0 0 chr1 183812129 183812164 -58852189 + AT_rich Low_complexity Low_complexity 1 35 0 2185 186 31 19 chr1 183812361 183812840 -58851513 - L1 LINE L1 -1455 4691 4207 21 36 0 0 chr1 183813788 183813816 -58850537 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr1 183814207 183814245 -58850108 + AT_rich Low_complexity Low_complexity 1 38 0 1506 282 43 9 chr1 183814842 183815406 -58848947 - HsTC2c DNA Tc2 -4 725 143 26 50 0 0 chr1 183815588 183815628 -58848725 + AT_rich Low_complexity Low_complexity 1 40 0 1781 123 16 0 chr1 183815631 183815884 -58848469 + AluSc SINE Alu 39 295 -14 923 282 105 12 chr1 183816515 183816838 -58847515 + L1M4b LINE L1 11 363 -6496 * 1679 183 4 169 chr1 183816816 183817198 -58847155 + L1M1 LINE L1 132 575 -6990 1008 109 23 6 chr1 183817198 183817372 -58846981 + CT-rich Low_complexity Low_complexity 4 180 0 1550 199 14 0 chr1 183817372 183817648 -58846705 - AluSx SINE Alu -32 280 1 1679 183 4 169 chr1 183817648 183817756 -58846597 + L1M1 LINE L1 418 542 -7023 548 192 171 20 chr1 183817776 183817922 -58846431 + L1M1 LINE L1 1638 1805 -5760 293 152 30 0 chr1 183817951 183818017 -58846336 + GA-rich Low_complexity Low_complexity 4 71 0 2833 155 149 4 chr1 183818017 183818566 -58845787 + L1M1 LINE L1 1757 2385 -5180 1336 76 0 0 chr1 183818566 183818738 -58845615 - LTR12 LTR ERV1 -420 294 123 264 250 0 0 chr1 183818742 183818794 -58845559 - LTR30 LTR ERV1 -670 52 1 4226 106 36 2 chr1 183818804 183819416 -58844937 - HERV9 LTR ERV1 -10 8389 7757 1946 171 65 43 chr1 183819411 183820178 -58844175 - HERV17 LTR ERV1 -5176 1720 919 * 6185 100 9 7 chr1 183820154 183821027 -58843326 - HERV17 LTR ERV1 -3445 4954 4080 7734 96 4 5 chr1 183821034 183822109 -58842244 - HERV17 LTR ERV1 -5260 3139 2066 1708 203 118 5 chr1 183822991 183823405 -58840948 - LOR1b LTR ERV1 0 461 1 32 26 0 0 chr1 183823706 183823745 -58840608 + AT_rich Low_complexity Low_complexity 1 39 0 2347 91 0 3 chr1 183824306 183824615 -58839738 + AluY SINE Alu 1 308 -3 1806 123 0 0 chr1 183824881 183825132 -58839221 + AluSg SINE Alu 1 251 -59 227 320 39 39 chr1 183825590 183825693 -58838660 + MIR3 SINE MIR 58 160 -48 28 79 0 0 chr1 183825934 183825997 -58838356 + AT_rich Low_complexity Low_complexity 1 63 0 746 314 67 13 chr1 183826871 183827201 -58837152 + MLT1E3 LTR MaLR 195 583 -41 207 69 0 0 chr1 183827427 183827456 -58836897 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 233 183 17 0 chr1 183827523 183827583 -58836770 + (TA)n Simple_repeat Simple_repeat 1 61 0 1044 188 55 18 chr1 183827725 183827943 -58836410 + AluJo SINE Alu 6 231 -81 234 116 0 0 chr1 183827944 183827987 -58836366 + (TA)n Simple_repeat Simple_repeat 2 44 0 341 191 44 7 chr1 183828035 183828171 -58836182 + (TA)n Simple_repeat Simple_repeat 2 142 0 244 0 0 0 chr1 183828831 183828858 -58835495 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1095 120 0 0 chr1 183828858 183829008 -58835345 - AluSg/x SINE Alu -1 308 133 418 307 151 18 chr1 183829868 183830093 -58834260 - L1ME3A LINE L1 -287 5883 5629 21 36 0 0 chr1 183830109 183830137 -58834216 + AT_rich Low_complexity Low_complexity 1 28 0 1607 156 62 56 chr1 183830394 183830767 -58833586 + THE1C LTR MaLR 1 375 0 9220 149 10 30 chr1 183830767 183832380 -58831973 + THE1C-int LTR MaLR 1 1580 0 1744 164 26 57 chr1 183832380 183832765 -58831588 + THE1C LTR MaLR 1 373 -2 1806 123 0 0 chr1 183833875 183834126 -58830227 - AluSg SINE Alu -59 251 1 2347 91 0 3 chr1 183834392 183834701 -58829652 - AluY SINE Alu -3 308 1 32 26 0 0 chr1 183835262 183835301 -58829052 + AT_rich Low_complexity Low_complexity 1 39 0 593 216 54 10 chr1 183835602 183835888 -58828465 + LOR1a LTR ERV1 1 369 -128 22 0 0 0 chr1 183836256 183836278 -58828075 + AT_rich Low_complexity Low_complexity 1 22 0 1675 175 54 18 chr1 183836761 183837092 -58827261 + MER61A LTR ERV1 1 343 0 264 100 0 0 chr1 183837499 183837539 -58826814 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 7128 32 1 1 chr1 183837724 183838574 -58825779 - L1PA3 LINE L1 0 6155 5306 * 7745 25 1 0 chr1 183838573 183839502 -58824851 + L1P LINE L1 4385 5316 -844 252 0 0 0 chr1 183840037 183840065 -58824288 + (TG)n Simple_repeat Simple_repeat 2 29 0 2058 133 3 9 chr1 183840361 183840676 -58823677 - AluSp SINE Alu 0 313 1 1414 156 7 42 chr1 183840793 183841081 -58823272 + L1PA16 LINE L1 5887 6164 -2 195 42 0 0 chr1 183841294 183841318 -58823035 + (TG)n Simple_repeat Simple_repeat 1 24 0 319 270 87 5 chr1 183841529 183841695 -58822658 - L1ME3A LINE L1 -671 5480 5306 1989 133 10 0 chr1 183841953 183842253 -58822100 - AluSc SINE Alu -6 303 1 200 262 267 19 chr1 183842609 183842815 -58821538 - L2 LINE L2 -2519 795 539 229 232 11 53 chr1 183843422 183843517 -58820836 + L1MC4 LINE L1 6613 6703 -1339 278 259 9 27 chr1 183843518 183843630 -58820723 + (TA)n Simple_repeat Simple_repeat 1 110 0 2166 113 0 16 chr1 183843676 183843987 -58820366 - AluSc SINE Alu -3 306 1 253 199 54 48 chr1 183844083 183844249 -58820104 + (TTATA)n Simple_repeat Simple_repeat 1 167 0 1344 224 17 7 chr1 183844287 183844577 -58819776 + AluJo SINE Alu 1 293 -19 25 0 0 0 chr1 183845800 183845825 -58818528 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 183845896 183845931 -58818422 + AT_rich Low_complexity Low_complexity 1 35 0 438 346 123 0 chr1 183846082 183846293 -58818060 - MIR SINE MIR -24 238 2 21 57 0 0 chr1 183846866 183846901 -58817452 + AT_rich Low_complexity Low_complexity 1 35 0 2177 186 31 19 chr1 183847098 183847577 -58816776 - L1 LINE L1 -1455 4691 4207 21 36 0 0 chr1 183848525 183848553 -58815800 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr1 183848944 183848982 -58815371 + AT_rich Low_complexity Low_complexity 1 38 0 1524 266 53 19 chr1 183849579 183850143 -58814210 - HsTC2c DNA Tc2 -4 725 143 26 50 0 0 chr1 183850325 183850365 -58813988 + AT_rich Low_complexity Low_complexity 1 40 0 1759 127 16 0 chr1 183850368 183850620 -58813733 + AluSc SINE Alu 39 294 -15 869 288 105 12 chr1 183851251 183851574 -58812779 + L1M4b LINE L1 11 363 -6496 * 1490 173 4 218 chr1 183851563 183851958 -58812395 + L1M1 LINE L1 142 620 -6945 1281 49 0 27 chr1 183851958 183852143 -58812210 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1531 208 14 0 chr1 183852148 183852436 -58811917 - AluSx SINE Alu -20 292 1 1490 173 4 218 chr1 183852436 183852544 -58811809 + L1M1 LINE L1 413 542 -7023 548 192 171 20 chr1 183852564 183852710 -58811643 + L1M1 LINE L1 1638 1805 -5760 293 152 30 0 chr1 183852739 183852805 -58811548 + GA-rich Low_complexity Low_complexity 4 71 0 2850 149 149 4 chr1 183852805 183853354 -58810999 + L1M1 LINE L1 1757 2385 -5180 1336 76 0 0 chr1 183853354 183853526 -58810827 - LTR12 LTR ERV1 -420 294 123 264 250 0 0 chr1 183853530 183853582 -58810771 - LTR30 LTR ERV1 -670 52 1 4173 113 36 2 chr1 183853592 183854204 -58810149 - HERV9 LTR ERV1 -10 8389 7757 1946 171 66 44 chr1 183854199 183854966 -58809387 - HERV17 LTR ERV1 -5176 1720 919 * 6219 97 9 7 chr1 183854942 183855815 -58808538 - HERV17 LTR ERV1 -3445 4954 4080 7773 94 4 5 chr1 183855822 183856897 -58807456 - HERV17 LTR ERV1 -5260 3139 2066 1749 198 118 5 chr1 183857780 183858194 -58806159 - LOR1b LTR ERV1 0 461 1 32 26 0 0 chr1 183858495 183858534 -58805819 + AT_rich Low_complexity Low_complexity 1 39 0 2359 87 0 3 chr1 183859095 183859404 -58804949 + AluY SINE Alu 1 308 -3 1789 122 93 0 chr1 183859670 183859940 -58804413 + AluSg SINE Alu 1 295 -15 28 79 0 0 chr1 183860724 183860787 -58803566 + AT_rich Low_complexity Low_complexity 1 63 0 730 317 68 13 chr1 183861666 183861994 -58802359 + MLT1E3 LTR MaLR 195 581 -43 207 69 0 0 chr1 183862222 183862251 -58802102 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 233 183 17 0 chr1 183862318 183862378 -58801975 + (TA)n Simple_repeat Simple_repeat 2 62 0 1017 193 55 18 chr1 183862520 183862738 -58801615 + AluJo SINE Alu 6 231 -81 201 139 0 0 chr1 183862739 183862782 -58801571 + (TA)n Simple_repeat Simple_repeat 1 43 0 341 191 44 7 chr1 183862830 183862966 -58801387 + (TA)n Simple_repeat Simple_repeat 2 142 0 1121 113 0 0 chr1 183863627 183863800 -58800553 - AluSg/x SINE Alu 0 307 135 432 302 151 18 chr1 183864660 183864885 -58799468 - L1ME3A LINE L1 -287 5883 5629 21 36 0 0 chr1 183864901 183864929 -58799424 + AT_rich Low_complexity Low_complexity 1 28 0 1571 161 62 56 chr1 183865186 183865559 -58798794 + THE1C LTR MaLR 1 375 0 9289 148 10 30 chr1 183865559 183867171 -58797182 + THE1C-int LTR MaLR 1 1580 0 1760 161 26 57 chr1 183867171 183867556 -58796797 + THE1C LTR MaLR 1 373 -2 516 350 60 56 chr1 183869004 183869911 -58794442 + ERVL LTR ERVL 814 1723 -4041 225 222 0 0 chr1 183871885 183871930 -58792423 + L1MB1 LINE L1 5491 5535 -636 1701 185 46 0 chr1 183871931 183872277 -58792076 + L1MB1 LINE L1 5510 5871 -297 409 220 81 2 chr1 183872464 183872570 -58791783 + MER61D LTR ERV1 387 1231 -18 805 161 68 19 chr1 183872570 183872731 -58791622 + L1MB1 LINE L1 5866 6034 -134 26 30 0 0 chr1 183872762 183872795 -58791558 + AT_rich Low_complexity Low_complexity 1 33 0 612 146 32 8 chr1 183872823 183872946 -58791407 + L1MB1 LINE L1 6026 6151 -17 23 68 0 0 chr1 183873211 183873255 -58791098 + AT_rich Low_complexity Low_complexity 1 44 0 1225 324 72 19 chr1 183873383 183874230 -58790123 - L1ME3 LINE L1 -9 6087 5188 334 291 109 0 chr1 183874386 183874551 -58789802 - L1ME3 LINE L1 -1194 4886 4704 1257 288 66 3 chr1 183874554 183875162 -58789191 - L1ME3 LINE L1 -1416 4664 4019 244 291 0 0 chr1 183875160 183875246 -58789107 - L1ME3 LINE L1 -5300 770 685 * 1165 99 0 0 chr1 183875284 183875435 -58788918 - AluSq/x SINE Alu -162 151 1 435 245 76 72 chr1 183875479 183875716 -58788637 - L1ME3A LINE L1 -15 6155 5918 513 292 103 34 chr1 183875724 183876231 -58788122 - L1ME3A LINE L1 -765 5381 4840 308 303 138 4 chr1 183876379 183876633 -58787720 - L1ME3A LINE L1 -1603 4543 4256 23 68 0 0 chr1 183876669 183876713 -58787640 + AT_rich Low_complexity Low_complexity 1 44 0 355 253 99 55 chr1 183876837 183877019 -58787334 - L1ME3A LINE L1 -2066 4080 3891 22 0 0 0 chr1 183878480 183878502 -58785851 + AT_rich Low_complexity Low_complexity 1 22 0 2299 60 7 7 chr1 183879524 183879822 -58784531 - AluY SINE Alu -13 298 1 21 0 0 0 chr1 183880966 183880987 -58783366 + AT_rich Low_complexity Low_complexity 1 21 0 2316 174 81 6 chr1 183882903 183883373 -58780980 - L1P LINE L1 -2034 4112 3608 26550 42 2 1 chr1 183883378 183887464 -58776889 - L1PA4 LINE L1 0 6155 2064 3631 232 79 6 chr1 183887462 183888478 -58775875 - L1P LINE L1 -2546 3600 2511 * 1619 223 75 2 chr1 183888570 183888969 -58775384 + MSTA LTR MaLR 1 428 0 7402 197 33 7 chr1 183888976 183890441 -58773912 + MSTA-int LTR MaLR 16 1518 -133 738 101 0 0 chr1 183890744 183890853 -58773500 - L1MA3 LINE L1 0 6305 6197 3105 181 43 21 chr1 183890884 183891650 -58772703 + L1MA7 LINE L1 5168 5943 -348 284 299 96 27 chr1 183891733 183891920 -58772433 + ERVL LTR ERVL 5111 5310 -454 22 0 0 0 chr1 183892357 183892379 -58771974 + AT_rich Low_complexity Low_complexity 1 22 0 339 109 0 0 chr1 183893422 183893468 -58770885 + THE1A LTR MaLR 308 353 -2 25 75 0 0 chr1 183893871 183893924 -58770429 + AT_rich Low_complexity Low_complexity 1 53 0 2121 128 3 0 chr1 183894024 183894328 -58770025 - AluSc SINE Alu -4 305 1 21 36 0 0 chr1 183894353 183894381 -58769972 + AT_rich Low_complexity Low_complexity 1 28 0 458 325 47 64 chr1 183894566 183894908 -58769445 - L2 LINE L2 -15 3298 2963 2004 189 19 32 chr1 183894910 183895382 -58768971 + L1P4 LINE L1 2431 2896 -3953 8290 206 55 14 chr1 183896007 183898010 -58766343 + L1P4 LINE L1 2947 5030 -1819 5941 188 57 104 chr1 183898010 183899651 -58764702 - MER52A LTR ERV1 0 1755 191 4616 186 21 5 chr1 183899679 183901144 -58763209 + L1P4 LINE L1 5023 6507 -359 287 106 64 0 chr1 183901142 183901189 -58763164 + L1PA13 LINE L1 6031 6080 -83 * 2321 97 3 0 chr1 183901356 183901665 -58762688 - AluY SINE Alu -1 310 1 21 0 0 0 chr1 183902054 183902075 -58762278 + AT_rich Low_complexity Low_complexity 1 21 0 243 372 53 0 chr1 183902392 183902486 -58761867 - L2 LINE L2 -40 3232 3134 189 74 0 0 chr1 183902794 183902821 -58761532 + (CA)n Simple_repeat Simple_repeat 2 28 0 770 208 10 46 chr1 183902833 183903030 -58761323 - L1MA10 LINE L1 -12 6322 6133 602 186 14 55 chr1 183903029 183903174 -58761179 + L1MB1 LINE L1 5968 6106 -83 * 5344 174 39 9 chr1 183903399 183903890 -58760463 + L1MA5 LINE L1 4796 5270 -1030 258 32 0 0 chr1 183903890 183903921 -58760432 + (CA)n Simple_repeat Simple_repeat 2 32 0 5344 174 39 9 chr1 183903921 183904893 -58759460 + L1MA5 LINE L1 5270 6296 -4 514 293 86 59 chr1 183905075 183905600 -58758753 + HAL1 LINE L1 1259 1797 -710 286 283 136 11 chr1 183906156 183906340 -58758013 + HAL1 LINE L1 2301 2507 0 21 0 0 0 chr1 183906457 183906478 -58757875 + AT_rich Low_complexity Low_complexity 1 21 0 963 209 0 0 chr1 183906778 183906960 -58757393 + FRAM SINE Alu 1 175 -1 196 363 137 36 chr1 183908486 183908792 -58755561 - L2 LINE L2 -774 2540 2204 1047 66 0 0 chr1 183909130 183909267 -58755086 + L1PA7 LINE L1 6017 6153 -1 198 241 138 23 chr1 183910929 183911016 -58753337 - L2 LINE L2 -2576 738 642 2384 136 23 48 chr1 183912317 183912757 -58751596 + MSTB1 LTR MaLR 3 431 -1 1990 137 135 5 chr1 183913814 183914193 -58750160 + MSTA LTR MaLR 1 428 0 740 187 133 17 chr1 183914193 183914434 -58749919 + MER33 DNA MER1_type 34 302 -22 22 70 0 0 chr1 183916379 183916422 -58747931 + AT_rich Low_complexity Low_complexity 1 43 0 195 100 0 0 chr1 183916566 183916596 -58747757 + (TG)n Simple_repeat Simple_repeat 2 31 0 245 302 10 10 chr1 183917297 183917393 -58746960 - MLT1J1 LTR MaLR 0 446 351 313 376 41 0 chr1 183917430 183917639 -58746714 - MLT1J2 LTR MaLR -226 224 7 22 0 0 0 chr1 183918271 183918293 -58746060 + AT_rich Low_complexity Low_complexity 1 22 0 23 92 0 0 chr1 183919007 183919072 -58745281 + AT_rich Low_complexity Low_complexity 1 65 0 243 0 0 0 chr1 183919319 183919346 -58745007 + (CA)n Simple_repeat Simple_repeat 2 28 0 189 324 99 18 chr1 183919596 183919707 -58744646 - L2 LINE L2 -233 3039 2920 503 177 0 0 chr1 183920003 183920082 -58744271 + FRAM SINE Alu 71 149 -27 324 0 0 0 chr1 183920093 183920129 -58744224 + (CAT)n Simple_repeat Simple_repeat 2 37 0 233 339 169 19 chr1 183920327 183920640 -58743713 - L2 LINE L2 -865 2449 2090 240 35 0 0 chr1 183920891 183920920 -58743433 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 335 212 0 24 chr1 183920924 183921009 -58743344 - LTR30 LTR ERV1 -98 624 542 238 360 37 30 chr1 183921012 183921176 -58743177 - L2 LINE L2 -2148 1166 1002 291 404 21 32 chr1 183921567 183921849 -58742504 - L2 LINE L2 -2477 837 559 185 396 9 19 chr1 183921994 183922100 -58742253 - L2 LINE L2 -2913 401 297 1221 35 0 0 chr1 183922573 183922718 -58741635 + L1PA5 LINE L1 6004 6148 -6 259 343 175 15 chr1 183922909 183923177 -58741176 - L2 LINE L2 -1212 2102 1792 218 259 9 111 chr1 183923350 183923458 -58740895 - L2 LINE L2 -38 3275 3179 222 208 0 0 chr1 183923460 183923513 -58740840 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 344 356 60 50 chr1 183923551 183924009 -58740344 - L2 LINE L2 -162 3151 2636 189 74 0 0 chr1 183924013 183924040 -58740313 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 185 333 42 28 chr1 183924245 183924317 -58740036 - L2 LINE L2 -916 2398 2326 23 68 0 0 chr1 183924778 183924822 -58739531 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 183925254 183925275 -58739078 + AT_rich Low_complexity Low_complexity 1 21 0 2075 107 18 0 chr1 183925424 183925746 -58738607 + AluSq SINE Alu 1 327 0 304 75 0 0 chr1 183926436 183926476 -58737877 - MADE1 DNA Mariner -40 40 1 1299 251 52 6 chr1 183927005 183927351 -58737002 - MLT1A1 LTR MaLR 0 365 4 5130 132 18 31 chr1 183927465 183927987 -58736366 - L1MA2 LINE L1 0 6300 5773 2203 70 0 20 chr1 183927987 183928285 -58736068 - AluY SINE Alu -19 292 1 5130 132 18 31 chr1 183928285 183928785 -58735568 - L1MA2 LINE L1 -527 5773 5237 36 0 0 0 chr1 183928785 183928821 -58735532 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr1 183928865 183928896 -58735457 + AT_rich Low_complexity Low_complexity 1 31 0 8076 210 16 10 chr1 183928907 183930500 -58733853 - L1M1 LINE L1 -5950 1615 13 702 242 55 115 chr1 183930522 183930931 -58733422 + L1ME LINE L1 2295 2667 -3759 1695 200 31 55 chr1 183930931 183931407 -58732946 - MLT1C LTR MaLR -2 465 1 702 242 55 115 chr1 183931407 183931567 -58732786 + L1ME LINE L1 2667 2835 -3591 521 234 12 120 chr1 183931601 183931880 -58732473 + L1ME LINE L1 5573 5812 -630 1429 151 55 81 chr1 183931880 183932263 -58732090 + THE1C LTR MaLR 3 375 0 521 234 12 120 chr1 183932263 183932317 -58732036 + L1ME LINE L1 5812 5870 -572 317 93 19 0 chr1 183932473 183932527 -58731826 + (GGA)n Simple_repeat Simple_repeat 3 57 0 210 212 15 15 chr1 183933952 183934018 -58730335 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1288 69 0 0 chr1 183934094 183934254 -58730099 - AluY SINE Alu -11 300 141 1697 64 15 0 chr1 183934335 183934728 -58729625 + L1PA4 LINE L1 5579 6151 -4 2045 129 7 0 chr1 183934816 183935110 -58729243 + AluSg SINE Alu 1 296 -14 1198 251 59 36 chr1 183935458 183935929 -58728424 + MER74B LTR ERVL 66 547 -75 279 171 73 49 chr1 183935861 183935943 -58728410 - MER88 LTR ERVL -301 163 80 * 390 21 0 0 chr1 183936055 183936102 -58728251 + (TG)n Simple_repeat Simple_repeat 1 47 0 1896 127 0 7 chr1 183936108 183936383 -58727970 - AluSx SINE Alu -39 273 1 233 356 96 10 chr1 183936800 183936904 -58727449 - L2 LINE L2 0 3272 3160 1916 94 0 18 chr1 183938063 183938339 -58726014 - AluY SINE Alu -2 309 39 25 0 0 0 chr1 183938498 183938523 -58725830 + AT_rich Low_complexity Low_complexity 1 25 0 1512 110 0 0 chr1 183939952 183940170 -58724183 - pTR5 LTR ERV1 -2046 392 175 265 262 39 29 chr1 183940177 183940280 -58724073 - LTR30 LTR ERV1 -80 642 539 6483 100 125 34 chr1 183940280 183941453 -58722900 - pTR5 LTR ERV1 -418 2020 741 483 304 68 5 chr1 183941736 183941927 -58722426 - MIR SINE MIR -58 204 2 23 68 0 0 chr1 183942156 183942200 -58722153 + AT_rich Low_complexity Low_complexity 1 44 0 2141 92 3 0 chr1 183942206 183942524 -58721829 - AluY SINE Alu 0 319 1 23 33 0 0 chr1 183942559 183942589 -58721764 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 183942639 183942668 -58721685 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 183942714 183942736 -58721617 + AT_rich Low_complexity Low_complexity 1 22 0 220 284 179 79 chr1 183944273 183944411 -58719942 + MIR SINE MIR 11 134 -128 2611 189 19 15 chr1 183944411 183944946 -58719407 + MER34 LTR ERV1 4 540 -2 220 284 179 79 chr1 183944946 183945036 -58719317 + MIR SINE MIR 134 262 0 22 0 0 0 chr1 183945502 183945524 -58718829 + AT_rich Low_complexity Low_complexity 1 22 0 978 240 11 21 chr1 183945582 183945865 -58718488 - MER31A LTR ERV1 -2 483 204 279 236 0 0 chr1 183945873 183945928 -58718425 + MER31A LTR ERV1 107 161 -324 1095 277 29 34 chr1 183946291 183946690 -58717663 + MLT1H-int LTR MaLR 955 1693 -42 572 179 8 0 chr1 183948204 183948327 -58716026 - L1MA8 LINE L1 0 6291 6168 3940 200 54 2 chr1 183948503 183949396 -58714957 + L1PB4 LINE L1 5213 6155 -1 2256 119 0 0 chr1 183949456 183949767 -58714586 + AluSq SINE Alu 3 313 0 26 30 0 0 chr1 183950186 183950219 -58714134 + AT_rich Low_complexity Low_complexity 1 33 0 283 357 72 11 chr1 183950290 183950485 -58713868 + MIR SINE MIR 41 246 -16 553 52 30 52 chr1 183950806 183950941 -58713412 + (TA)n Simple_repeat Simple_repeat 1 132 0 6619 29 0 2 chr1 183952113 183952898 -58711455 - L1PA4 LINE L1 0 6155 5373 184 357 48 12 chr1 183953900 183953984 -58710369 - L2 LINE L2 -36 3236 3150 256 245 0 92 chr1 183954443 183954541 -58709812 + MLT1H LTR MaLR 83 171 -378 271 249 92 64 chr1 183954651 183954866 -58709487 + MLT1H LTR MaLR 331 548 -1 1229 204 59 46 chr1 183955534 183955838 -58708515 + AluJb SINE Alu 5 312 0 250 255 43 0 chr1 183955848 183955942 -58708411 + (TA)n Simple_repeat Simple_repeat 2 99 0 30 0 0 0 chr1 183956933 183956963 -58707390 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr1 183957529 183957559 -58706794 + AT_rich Low_complexity Low_complexity 1 30 0 343 297 10 20 chr1 183958911 183959012 -58705341 - MIR3 SINE MIR -52 156 57 675 209 38 142 chr1 183959974 183960213 -58704140 - AluJb SINE Alu -98 214 1 12809 206 32 13 chr1 183960214 183964333 -58700020 + L1PB3 LINE L1 2565 6757 -113 309 186 0 0 chr1 183964349 183964419 -58699934 + (CA)n Simple_repeat Simple_repeat 2 71 0 5267 216 29 22 chr1 183964431 183965665 -58698688 + MER52A LTR ERV1 38 1409 -346 182 152 0 22 chr1 183965705 183965751 -58698602 + (CA)n Simple_repeat Simple_repeat 2 46 0 184 292 62 0 chr1 183965787 183965852 -58698501 - MIR SINE MIR -108 154 86 2141 130 0 0 chr1 183965882 183966190 -58698163 - AluSg SINE Alu -2 308 1 1822 127 0 0 chr1 183967089 183967349 -58697004 + AluSq SINE Alu 1 260 -53 607 125 0 0 chr1 183967350 183967438 -58696915 + AluSg/x SINE Alu 214 301 -9 210 143 0 0 chr1 183968057 183968092 -58696261 + (CA)n Simple_repeat Simple_repeat 1 35 0 28 91 0 0 chr1 183968105 183968182 -58696171 + AT_rich Low_complexity Low_complexity 1 77 0 1666 167 7 7 chr1 183968428 183968728 -58695625 - AluSx SINE Alu -1 311 12 1851 249 66 28 chr1 183968984 183969743 -58694610 + L1 LINE L1 3520 4307 -1839 290 253 53 0 chr1 183969771 183969866 -58694487 + L1 LINE L1 4645 4744 -1402 23 33 0 0 chr1 183969899 183969929 -58694424 + AT_rich Low_complexity Low_complexity 1 30 0 705 182 19 38 chr1 183970080 183970239 -58694114 - FRAM SINE Alu -22 154 1 323 336 120 12 chr1 183970296 183970814 -58693539 + L1M4 LINE L1 4648 5221 -925 3884 220 42 20 chr1 183971218 183972338 -58692015 - L1M3 LINE L1 -743 5403 4316 435 178 28 19 chr1 183972387 183972494 -58691859 - Charlie5 DNA MER1_type -100 2512 2405 501 227 146 0 chr1 183972502 183972687 -58691666 - L1MA9 LINE L1 -39 6273 6062 207 233 11 22 chr1 183972714 183972804 -58691549 + (TA)n Simple_repeat Simple_repeat 1 89 0 258 164 0 0 chr1 183972880 183972935 -58691418 + (TA)n Simple_repeat Simple_repeat 2 56 0 2884 211 64 16 chr1 183972938 183973758 -58690595 - L1MA9 LINE L1 -256 6056 5197 336 234 14 0 chr1 183973775 183973879 -58690474 + L1MA9 LINE L1 5072 5177 -969 293 185 49 12 chr1 183973868 183973949 -58690404 - L1M3 LINE L1 -1807 4339 4256 * 23 0 0 0 chr1 183974838 183974861 -58689492 + AT_rich Low_complexity Low_complexity 1 23 0 816 309 95 9 chr1 183975328 183975645 -58688708 + MER74C LTR ERVL 99 442 -18 357 82 0 0 chr1 183975885 183975934 -58688419 + MADE1 DNA Mariner 32 80 0 757 44 0 0 chr1 183976426 183976516 -58687837 + L1PA8 LINE L1 6070 6159 -13 28 29 0 0 chr1 183976519 183976554 -58687799 + AT_rich Low_complexity Low_complexity 1 35 0 216 342 75 8 chr1 183977101 183977221 -58687132 + MIR SINE MIR 65 192 -70 202 288 98 65 chr1 183977903 183978087 -58686266 - L2 LINE L2 -5 3308 3119 546 348 106 16 chr1 183978191 183978616 -58685737 - L2 LINE L2 -359 2955 2493 287 360 88 8 chr1 183978872 183979111 -58685242 - L2 LINE L2 -817 2497 2240 336 206 14 0 chr1 183979998 183980071 -58684282 + MER89 LTR ERV1 3 76 -483 * 803 272 18 14 chr1 183980057 183980274 -58684079 + MER89 LTR ERV1 197 414 -145 1944 151 75 20 chr1 183980287 183980632 -58683721 + THE1B LTR MaLR 1 364 0 10366 125 14 3 chr1 183980632 183982195 -58682158 + THE1B-int LTR MaLR 1 1580 0 1697 169 82 20 chr1 183982195 183982538 -58681815 + THE1B LTR MaLR 1 364 0 392 246 15 54 chr1 183982538 183982668 -58681685 + MER89 LTR ERV1 435 559 0 1024 219 51 63 chr1 183984181 183984496 -58679857 - MER67D LTR ERV1 -203 311 1 707 318 45 3 chr1 183985073 183985384 -58678969 - MER110 LTR ERV1 -2 489 166 298 206 8 122 chr1 183985464 183985595 -58678758 - MER110A LTR ERV1 -281 187 72 400 374 19 24 chr1 183986971 183987177 -58677176 + LTR33 LTR ERVL 12 216 -305 784 227 39 20 chr1 183987286 183987489 -58676864 - MER20 DNA MER1_type -7 212 6 1731 177 0 22 chr1 183988026 183988342 -58676011 + AluJb SINE Alu 1 309 -3 503 285 120 101 chr1 183989147 183989256 -58675097 + MLT1E LTR MaLR 1 106 -487 399 21 0 0 chr1 183989256 183989304 -58675049 + (TG)n Simple_repeat Simple_repeat 1 48 0 503 285 120 101 chr1 183989304 183989552 -58674801 + MLT1E LTR MaLR 106 365 -228 * 796 285 67 38 chr1 183989530 183989846 -58674507 + MLT2F LTR ERVL 27 351 -312 2456 309 65 10 chr1 183989846 183991088 -58673265 + ERVL-F LTR ERVL 3792 5131 -633 1461 139 24 28 chr1 183991093 183991344 -58673009 - AluSg SINE Alu -7 303 54 304 151 0 139 chr1 183991350 183991375 -58672978 - MADE1 DNA Mariner -6 74 47 1902 142 0 0 chr1 183991375 183991657 -58672696 + AluSx SINE Alu 1 282 -30 304 151 0 139 chr1 183991657 183991717 -58672636 - MADE1 DNA Mariner -33 47 1 1055 227 113 32 chr1 183991719 183992125 -58672228 + ERVL-F LTR ERVL 5144 5582 -182 897 360 63 22 chr1 183992254 183992841 -58671512 + MLT2F LTR ERVL 52 662 -1 1604 88 5 0 chr1 183993304 183993520 -58670833 + AluY SINE Alu 75 291 -20 339 25 0 0 chr1 183993522 183993562 -58670791 + (TA)n Simple_repeat Simple_repeat 1 40 0 2055 101 31 7 chr1 183993721 183994008 -58670345 + AluSc SINE Alu 3 296 -13 272 260 40 80 chr1 183994013 183994113 -58670240 - MER5A DNA MER1_type -59 130 35 23 78 0 0 chr1 183995274 183995325 -58669028 + AT_rich Low_complexity Low_complexity 1 51 0 21 71 0 0 chr1 183995407 183995449 -58668904 + AT_rich Low_complexity Low_complexity 1 42 0 195 322 35 35 chr1 183996082 183996169 -58668184 + L2 LINE L2 3186 3272 0 193 315 81 45 chr1 183996673 183996784 -58667569 + L2 LINE L2 3199 3313 0 23 33 0 0 chr1 183996842 183996872 -58667481 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 183997059 183997087 -58667266 + AT_rich Low_complexity Low_complexity 1 28 0 213 389 53 0 chr1 183997478 183997609 -58666744 + L2 LINE L2 2079 2216 -1098 48 43 0 0 chr1 183997917 183997986 -58666367 + AT_rich Low_complexity Low_complexity 1 69 0 1012 316 102 52 chr1 183998263 183999144 -58665209 + L2 LINE L2 1530 2454 -860 311 294 90 11 chr1 183999451 183999628 -58664725 + L1M4 LINE L1 4066 4256 -1890 578 106 0 0 chr1 183999696 183999781 -58664572 - AluSc SINE Alu -6 303 219 2518 4 4 0 chr1 183999884 184000193 -58664160 + AluYa5 SINE Alu 1 310 0 253 227 91 0 chr1 184000193 184000281 -58664072 - L1M4 LINE L1 -866 5280 5185 823 166 21 46 chr1 184000312 184000518 -58663835 + L1MB8 LINE L1 5752 5948 -230 644 209 0 18 chr1 184000522 184000685 -58663668 + L1MB8 LINE L1 6008 6167 -11 659 206 36 54 chr1 184000759 184000982 -58663371 + L1MB8 LINE L1 5960 6178 0 464 108 0 0 chr1 184002052 184002117 -58662236 + THE1C LTR MaLR 309 373 -2 699 231 40 20 chr1 184002187 184002434 -58661919 - L1M4 LINE L1 -1498 4648 4397 34 24 0 0 chr1 184006393 184006434 -58657919 + AT_rich Low_complexity Low_complexity 1 41 0 242 261 0 68 chr1 184006949 184007037 -58657316 + AluYa8 SINE Alu 99 180 -120 287 283 57 38 chr1 184007176 184007282 -58657071 + L2 LINE L2 3205 3312 -1 1871 94 21 94 chr1 184007790 184008120 -58656233 + AluYb8 SINE Alu 1 306 -12 270 0 0 0 chr1 184008317 184008347 -58656006 + (TG)n Simple_repeat Simple_repeat 1 30 0 27 29 0 0 chr1 184008350 184008384 -58655969 + AT_rich Low_complexity Low_complexity 1 34 0 955 162 26 0 chr1 184008523 184008677 -58655676 - L1PB4 LINE L1 -13 6143 5986 31 0 0 0 chr1 184008833 184008864 -58655489 + AT_rich Low_complexity Low_complexity 1 31 0 248 154 19 0 chr1 184008873 184008925 -58655428 + (TA)n Simple_repeat Simple_repeat 1 53 0 245 114 0 0 chr1 184008925 184008969 -58655384 + LTR66 LTR ERVL 394 437 -173 22 70 0 0 chr1 184009409 184009452 -58654901 + AT_rich Low_complexity Low_complexity 1 43 0 1396 228 40 47 chr1 184009699 184009991 -58654362 - L1MA9 LINE L1 -42 6270 5981 1577 131 178 47 chr1 184009991 184010312 -58654041 - THE1B LTR MaLR -1 363 1 1396 228 40 47 chr1 184010312 184010492 -58653861 - L1MA9 LINE L1 -331 5981 5801 191 248 0 158 chr1 184010780 184010913 -58653440 + L2 LINE L2 2980 3091 -181 1485 272 57 31 chr1 184011230 184011848 -58652505 - L1MC4a LINE L1 -1902 5906 5273 817 245 0 0 chr1 184012943 184013102 -58651251 + L1PA13 LINE L1 64 222 -6565 10890 239 14 12 chr1 184013103 184016437 -58647916 + L1PA13 LINE L1 1536 4890 -1907 2624 182 68 26 chr1 184016432 184016611 -58647742 + L1PA13 LINE L1 5356 5526 -1288 * 222 37 0 0 chr1 184016611 184016638 -58647715 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2624 182 68 26 chr1 184016638 184017140 -58647213 + L1PA13 LINE L1 5526 6071 -743 5337 138 38 17 chr1 184017240 184017744 -58646609 + L1PA15 LINE L1 5136 5628 -537 2280 59 42 0 chr1 184017744 184018033 -58646320 + AluY SINE Alu 1 301 -10 5337 138 38 17 chr1 184018033 184018519 -58645834 + L1PA15 LINE L1 5628 6165 0 417 233 32 101 chr1 184019590 184019779 -58644574 - L1ME2 LINE L1 -9 6155 5980 1487 271 43 113 chr1 184019783 184020481 -58643872 - L1M4 LINE L1 -4765 2192 1523 1529 201 13 13 chr1 184020481 184020785 -58643568 - AluJb SINE Alu -4 308 5 1487 271 43 113 chr1 184020785 184021432 -58642921 - L1M4 LINE L1 -5434 1523 832 414 278 68 21 chr1 184021665 184021856 -58642497 - L1M4 LINE L1 -6649 210 11 22 56 0 0 chr1 184022012 184022048 -58642305 + AT_rich Low_complexity Low_complexity 1 36 0 4574 180 51 0 chr1 184022297 184023286 -58641067 - L1PA16 LINE L1 -10 6156 5116 980 279 67 45 chr1 184023668 184024116 -58640237 - MLT1C LTR MaLR -8 459 2 22 70 0 0 chr1 184024401 184024444 -58639909 + AT_rich Low_complexity Low_complexity 1 43 0 2420 80 0 6 chr1 184024487 184024798 -58639555 - AluY SINE Alu 0 311 3 737 301 282 28 chr1 184024820 184025525 -58638828 - L2 LINE L2 -465 2849 1966 1771 128 194 6 chr1 184025904 184026264 -58638089 + MSTA LTR MaLR 1 428 0 210 363 148 0 chr1 184026265 184026400 -58637953 - L2 LINE L2 -1 3271 3117 34 55 0 0 chr1 184029128 184029183 -58635170 + AT_rich Low_complexity Low_complexity 1 55 0 349 291 99 14 chr1 184029625 184029766 -58634587 - MER74B LTR ERVL -349 273 121 5072 174 27 13 chr1 184030817 184031917 -58632436 - L1MA7 LINE L1 0 6291 5175 1706 168 32 35 chr1 184031992 184032167 -58632186 + MER2 DNA MER2_type 1 176 -168 2254 95 0 0 chr1 184032167 184032463 -58631890 + AluSg SINE Alu 1 296 -14 1706 168 32 35 chr1 184032463 184032632 -58631721 + MER2 DNA MER2_type 176 344 0 180 111 0 0 chr1 184033083 184033110 -58631243 + (CA)n Simple_repeat Simple_repeat 2 28 0 1193 144 138 104 chr1 184034760 184035087 -58629266 + MER44D DNA MER2_type 1 608 -1 248 193 18 53 chr1 184036285 184036399 -58627954 + L1MEd LINE L1 1053 1162 -5043 254 292 92 38 chr1 184036429 184036744 -58627609 + L1MEd LINE L1 1295 1626 -4770 367 289 112 33 chr1 184036902 184037207 -58627146 + L1MEd LINE L1 1895 2223 -4173 1708 70 0 0 chr1 184037253 184037467 -58626886 + AluY SINE Alu 86 299 -12 248 261 60 95 chr1 184037523 184037807 -58626546 + L1MEd LINE L1 2298 2571 -3644 2279 156 18 54 chr1 184038473 184039024 -58625329 + L1 LINE L1 4222 4752 -1394 299 326 46 28 chr1 184039080 184039298 -58625055 + L1ME3A LINE L1 5821 6042 -128 23 33 0 0 chr1 184039698 184039728 -58624625 + AT_rich Low_complexity Low_complexity 1 30 0 1152 274 149 8 chr1 184040016 184040512 -58623841 - L2 LINE L2 -845 2469 1904 181 114 29 29 chr1 184040850 184040885 -58623468 + L2 LINE L2 3178 3212 -101 2967 223 25 20 chr1 184041852 184042225 -58622128 - L1PA16 LINE L1 -5 6161 5791 396 0 0 0 chr1 184042225 184042269 -58622084 + (TA)n Simple_repeat Simple_repeat 1 44 0 2967 223 25 20 chr1 184042269 184042653 -58621700 - L1PA16 LINE L1 -375 5791 5400 2203 170 31 16 chr1 184043580 184044027 -58620326 + L1ME1 LINE L1 5350 5803 -530 23 33 0 0 chr1 184044202 184044232 -58620121 + AT_rich Low_complexity Low_complexity 1 30 0 682 36 0 0 chr1 184045078 184045187 -58619166 + L1PA3 LINE L1 6063 6171 0 49 71 0 0 chr1 184045197 184045295 -58619058 + AT_rich Low_complexity Low_complexity 1 98 0 34 65 0 0 chr1 184045349 184045411 -58618942 + AT_rich Low_complexity Low_complexity 1 62 0 272 191 35 35 chr1 184045424 184045539 -58618814 - L1M4 LINE L1 -2211 3935 3821 253 214 67 11 chr1 184045595 184045684 -58618669 + L1ME1 LINE L1 6080 6177 -1 1151 264 50 83 chr1 184045907 184046221 -58618132 + MLT1F1 LTR MaLR 82 376 -191 2091 106 13 7 chr1 184046221 184046522 -58617831 + AluSx SINE Alu 1 303 -9 1151 264 50 83 chr1 184046522 184046703 -58617650 + MLT1F1 LTR MaLR 376 561 -6 5812 101 13 0 chr1 184047490 184048597 -58615756 - L1PA14 LINE L1 -4 6157 5086 639 121 20 0 chr1 184049303 184049402 -58614951 + L1P4 LINE L1 5509 5609 -552 2781 139 7 0 chr1 184049498 184049929 -58614424 - MER57B LTR ERV1 0 434 1 544 301 15 5 chr1 184050630 184050836 -58613517 - MER3 DNA MER1_type -1 208 1 30 27 0 0 chr1 184051111 184051148 -58613205 + AT_rich Low_complexity Low_complexity 1 37 0 208 288 17 0 chr1 184051907 184051966 -58612387 - L2 LINE L2 0 3272 3213 261 0 0 0 chr1 184052024 184052053 -58612300 + (TG)n Simple_repeat Simple_repeat 2 30 0 3244 177 5 2 chr1 184052069 184052658 -58611695 + L1P LINE L1 4540 5130 -1016 4275 224 84 39 chr1 184054757 184056226 -58608127 + L1MB7 LINE L1 3626 5238 -946 2014 138 7 3 chr1 184056226 184056531 -58607822 - AluSg SINE Alu -4 306 1 4275 224 84 39 chr1 184056531 184057481 -58606872 + L1MB7 LINE L1 5238 6144 -40 180 0 0 0 chr1 184057481 184057501 -58606852 + (TG)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chr1 184057754 184057781 -58606572 + AT_rich Low_complexity Low_complexity 1 27 0 2179 108 13 0 chr1 184058370 184058676 -58605677 + AluSx SINE Alu 2 311 -1 25 31 0 0 chr1 184058765 184058797 -58605556 + AT_rich Low_complexity Low_complexity 1 32 0 672 104 19 0 chr1 184059186 184059292 -58605061 - AluY SINE Alu 0 311 204 303 295 128 19 chr1 184059610 184059766 -58604587 + L2 LINE L2 2362 2534 -780 284 328 37 30 chr1 184059763 184059897 -58604456 + L2 LINE L2 3161 3295 -18 * 611 311 50 31 chr1 184060200 184060521 -58603832 - ERVL LTR ERVL -1124 4640 4314 234 0 0 0 chr1 184060645 184060671 -58603682 + (TA)n Simple_repeat Simple_repeat 1 26 0 10023 212 39 25 chr1 184060671 184061669 -58602684 - L1P5 LINE L1 -375 5781 4799 3104 145 83 29 chr1 184061669 184062250 -58602103 + LTR9 LTR ERV1 1 612 0 10023 212 39 25 chr1 184062250 184062419 -58601934 - L1P5 LINE L1 -1357 4799 4634 1552 217 0 3 chr1 184062419 184062719 -58601634 + AluJo SINE Alu 5 303 -9 10023 212 39 25 chr1 184062719 184064809 -58599544 - L1P5 LINE L1 -1522 4634 2481 1049 146 0 0 chr1 184064810 184064974 -58599379 + AluSg/x SINE Alu 149 312 0 1024 234 29 42 chr1 184064980 184065309 -58599044 - L1PA15-16 LINE L1 -3650 3199 2872 2974 94 6 53 chr1 184065309 184065798 -58598555 - L1PB1 LINE L1 -5 6146 5681 1024 234 29 42 chr1 184065798 184066020 -58598333 - L1PA15-16 LINE L1 -3977 2872 2648 261 57 0 0 chr1 184066171 184066206 -58598147 + (CA)n Simple_repeat Simple_repeat 2 36 0 360 0 0 0 chr1 184067063 184067103 -58597250 + (CA)n Simple_repeat Simple_repeat 2 41 0 408 216 23 0 chr1 184067320 184067408 -58596945 - L1MD3 LINE L1 -14 7981 7892 21 36 0 0 chr1 184067833 184067861 -58596492 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr1 184067985 184068014 -58596339 + AT_rich Low_complexity Low_complexity 1 29 0 4256 239 51 18 chr1 184068607 184070224 -58594129 - L1MC2 LINE L1 -286 6338 4611 2062 78 0 46 chr1 184070224 184070505 -58593848 + AluY SINE Alu 29 296 -15 4256 239 51 18 chr1 184070505 184071302 -58593051 - L1MC2 LINE L1 -2013 4611 3841 42 36 0 0 chr1 184071347 184071403 -58592950 + AT_rich Low_complexity Low_complexity 1 56 0 1412 181 108 42 chr1 184071406 184072003 -58592350 - L1MC2 LINE L1 -4200 2226 1491 994 209 29 119 chr1 184072448 184072859 -58591494 + MLT1A2 LTR MaLR 1 374 0 2127 232 22 89 chr1 184073615 184074325 -58590028 + MER76 LTR ERV 1 663 -25 2475 0 0 0 chr1 184074480 184074751 -58589602 + AluYa5 SINE Alu 1 271 -40 594 148 33 16 chr1 184074988 184075110 -58589243 - MER58 DNA MER1_type -2223 197 74 778 235 37 5 chr1 184075137 184075354 -58588999 - L1MA8 LINE L1 -24 6267 6044 390 308 87 39 chr1 184075464 184075703 -58588650 - MIR SINE MIR -5 257 8 734 292 131 26 chr1 184075875 184075928 -58588425 + HAL1 LINE L1 1154 1200 -1307 2524 56 0 0 chr1 184075928 184076232 -58588121 + AluY SINE Alu 1 304 -7 734 292 131 26 chr1 184076232 184076917 -58587436 + HAL1 LINE L1 1200 1970 -537 316 287 54 0 chr1 184077154 184077283 -58587070 + HAL1 LINE L1 2262 2397 -110 23 33 0 0 chr1 184077875 184077905 -58586448 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr1 184077951 184077983 -58586370 + AT_rich Low_complexity Low_complexity 1 32 0 450 278 81 13 chr1 184078110 184078344 -58586009 + L1MC5 LINE L1 7636 7885 -76 2495 266 96 53 chr1 184078880 184079057 -58585296 + L1MB8 LINE L1 675 843 -5539 1760 116 76 4 chr1 184079057 184079333 -58585020 + AluSx SINE Alu 1 296 -16 2495 266 96 53 chr1 184079333 184082157 -58582196 + L1MB8 LINE L1 843 3959 -2423 2158 113 0 31 chr1 184082157 184082477 -58581876 + AluSg SINE Alu 1 310 0 2495 266 96 53 chr1 184082477 184082744 -58581609 + L1MB8 LINE L1 3959 4213 -2169 1857 269 33 52 chr1 184082754 184083734 -58580619 + L1MB8 LINE L1 4467 5427 -955 825 186 25 6 chr1 184083734 184083895 -58580458 + LTR32 LTR ERVL 232 395 -76 402 158 20 82 chr1 184083910 184084056 -58580297 + L1MB8 LINE L1 5426 5562 -820 1065 140 0 6 chr1 184084058 184084229 -58580124 - LOR1b-int LTR ERV1 -2150 5970 5801 * 4919 118 8 19 chr1 184084219 184085024 -58579329 - LOR1b-int LTR ERV1 -2596 5524 4729 1800 218 10 45 chr1 184085035 184085484 -58578869 + MER52A LTR ERV1 264 774 -981 434 188 10 10 chr1 184085484 184085580 -58578773 - LOR1b-int LTR ERV1 -6039 2081 1986 300 114 14 29 chr1 184085581 184085651 -58578702 + (TTC)n Simple_repeat Simple_repeat 2 70 0 9502 124 75 13 chr1 184085667 184087349 -58577004 - LOR1b-int LTR ERV1 -6131 1989 203 1977 169 25 16 chr1 184087359 184087726 -58576627 - LOR1b-int LTR ERV1 -7749 371 2 1836 174 66 50 chr1 184087727 184088165 -58576188 - LOR1b LTR ERV1 0 461 17 1896 269 50 10 chr1 184088214 184088831 -58575522 + L1MB8 LINE L1 5727 6368 -46 214 125 42 0 chr1 184088881 184088929 -58575424 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 35 0 0 chr1 184088941 184088970 -58575383 + AT_rich Low_complexity Low_complexity 1 29 0 309 183 43 86 chr1 184088980 184089073 -58575280 - L1MC4 LINE L1 -1339 6703 6615 419 115 94 52 chr1 184089073 184089169 -58575184 + L1MC/D LINE L1 5508 5607 -726 21 0 0 0 chr1 184089283 184089304 -58575049 + AT_rich Low_complexity Low_complexity 1 21 0 1980 114 11 0 chr1 184089422 184089703 -58574650 - AluSq SINE Alu -29 284 1 370 0 40 0 chr1 184089855 184089905 -58574448 + (TA)n Simple_repeat Simple_repeat 1 52 0 333 62 0 0 chr1 184089905 184089953 -58574400 + (GA)n Simple_repeat Simple_repeat 1 48 0 736 58 48 0 chr1 184089959 184090062 -58574291 - L1PA13 LINE L1 -4 6159 6052 1372 259 151 56 chr1 184091093 184091846 -58572507 + LTR1B LTR ERV1 2 826 0 1157 240 100 57 chr1 184091878 184092420 -58571933 - MLT1E LTR MaLR -8 581 2 23 0 0 0 chr1 184093099 184093122 -58571231 + AT_rich Low_complexity Low_complexity 1 23 0 360 329 88 18 chr1 184093131 184093301 -58571052 - MIR SINE MIR -73 189 8 25 31 0 0 chr1 184093392 184093424 -58570929 + AT_rich Low_complexity Low_complexity 1 32 0 233 232 14 94 chr1 184094327 184094465 -58569888 - L1M4 LINE L1 -1537 4609 4483 2547 220 49 31 chr1 184094565 184095241 -58569112 - MER76 LTR ERV 0 688 1 489 310 114 0 chr1 184095524 184095708 -58568645 + MIR SINE MIR 10 214 -48 284 294 71 0 chr1 184096051 184096136 -58568217 + L2 LINE L2 3149 3239 -33 304 323 64 32 chr1 184096170 184096390 -58567963 - MIR SINE MIR -22 240 14 1175 259 106 35 chr1 184096883 184097288 -58567065 + MLT2B1 LTR ERVL 2 435 -85 41 21 0 0 chr1 184097294 184097342 -58567011 + AT_rich Low_complexity Low_complexity 1 48 0 2438 147 20 31 chr1 184097884 184098333 -58566020 + MLT2A1 LTR ERVL 1 444 0 16694 87 10 3 chr1 184098334 184100550 -58563803 + HERVL-A1 LTR ERVL 2 2233 -3421 * 22372 79 10 8 chr1 184100543 184103081 -58561272 + HERVL-A1 LTR ERVL 2522 5068 -586 2176 92 24 7 chr1 184103081 184103376 -58560977 + AluSx SINE Alu 1 300 -12 22372 79 10 8 chr1 184103376 184103814 -58560539 + HERVL-A1 LTR ERVL 5068 5504 -150 1287 90 28 0 chr1 184104665 184104842 -58559511 + HERVL LTR ERVL 3367 3548 -2106 25 90 0 0 chr1 184104849 184104916 -58559437 + AT_rich Low_complexity Low_complexity 1 67 0 1088 74 7 7 chr1 184104973 184105122 -58559231 + HERVL LTR ERVL 4754 4902 -752 24 53 0 0 chr1 184105136 184105174 -58559179 + AT_rich Low_complexity Low_complexity 1 38 0 38 39 0 0 chr1 184105390 184105442 -58558911 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr1 184106935 184106957 -58557396 + AT_rich Low_complexity Low_complexity 1 22 0 321 340 49 12 chr1 184107402 184107564 -58556789 - MER5A DNA MER1_type -21 168 1 461 304 144 29 chr1 184108272 184108797 -58555556 - MLT1G1 LTR MaLR 0 555 6 196 231 0 39 chr1 184108850 184108902 -58555451 + L2 LINE L2 3193 3242 -71 2170 109 0 0 chr1 184109207 184109501 -58554852 - AluSc SINE Alu -11 298 5 208 261 154 0 chr1 184109816 184109881 -58554472 - L2 LINE L2 -37 3276 3202 622 235 27 0 chr1 184110036 184110223 -58554130 + L1MA8 LINE L1 6100 6291 0 4636 174 44 13 chr1 184110224 184111499 -58552854 + L1PA16 LINE L1 4843 6163 -3 29 70 0 0 chr1 184111499 184111556 -58552797 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr1 184111688 184111712 -58552641 + AT_rich Low_complexity Low_complexity 1 24 0 2060 139 73 14 chr1 184111774 184112118 -58552235 + THE1B LTR MaLR 1 364 0 9870 135 20 3 chr1 184112118 184113670 -58550683 + THE1B-int LTR MaLR 1 1578 -2 1708 166 88 38 chr1 184113676 184114019 -58550334 + THE1B LTR MaLR 5 364 0 24 32 0 0 chr1 184114022 184114053 -58550300 + AT_rich Low_complexity Low_complexity 1 31 0 221 333 37 37 chr1 184114076 184114157 -58550196 - L2 LINE L2 -8 3264 3184 292 333 20 0 chr1 184114310 184114412 -58549941 + MLT1J LTR MaLR 3 106 -405 474 290 65 21 chr1 184114490 184114676 -58549677 + MLT1J LTR MaLR 243 436 -75 310 323 57 25 chr1 184114895 184115053 -58549300 - L2 LINE L2 0 3313 3151 1314 311 71 48 chr1 184115623 184116621 -58547732 + L1MCb LINE L1 64 1084 -4961 640 213 7 0 chr1 184116623 184116759 -58547594 + L1MC3 LINE L1 7263 7399 -386 2397 61 0 0 chr1 184116885 184117196 -58547157 - AluYa5 SINE Alu 0 311 1 2042 240 20 86 chr1 184117353 184118061 -58546292 - MER76 LTR ERV -27 661 1 272 200 0 0 chr1 184118989 184119034 -58545319 - Tigger3b DNA MER2_type -1 1230 1186 9122 29 2 0 chr1 184119034 184120117 -58544236 - L1PA2 LINE L1 -1171 4975 3891 7533 23 1 0 chr1 184120117 184121285 -58543068 + L1PA2 LINE L1 4996 6164 0 5569 163 86 2 chr1 184121287 184121856 -58542497 - Tigger3b DNA MER2_type -1832 1196 676 360 0 0 0 chr1 184121856 184121896 -58542457 + (TA)n Simple_repeat Simple_repeat 1 40 0 5569 163 86 2 chr1 184121896 184122428 -58541925 - Tigger3b DNA MER2_type -2352 676 2 24 32 0 0 chr1 184123527 184123558 -58540795 + AT_rich Low_complexity Low_complexity 1 31 0 25 95 0 0 chr1 184124505 184124579 -58539774 + AT_rich Low_complexity Low_complexity 1 74 0 27 62 0 0 chr1 184127141 184127189 -58537164 + AT_rich Low_complexity Low_complexity 1 48 0 2264 95 0 9 chr1 184127566 184127882 -58536471 + AluSq SINE Alu 1 313 0 215 182 23 0 chr1 184127970 184128014 -58536339 + (TA)n Simple_repeat Simple_repeat 2 46 0 183 204 0 0 chr1 184128305 184128359 -58535994 + (TA)n Simple_repeat Simple_repeat 1 54 0 2270 53 3 7 chr1 184128446 184128766 -58535587 - AluSp SINE Alu 0 319 1 1573 188 36 17 chr1 184128831 184129192 -58535161 - L1MA10 LINE L1 -3 6331 5964 2151 201 18 48 chr1 184129193 184129751 -58534602 - L1MA10 LINE L1 -362 5806 5266 1497 236 59 5 chr1 184129749 184130156 -58534197 + L1MA10 LINE L1 4847 5275 -871 * 2815 208 66 10 chr1 184130661 184130850 -58533503 + MER67B LTR ERV1 15 192 -469 1735 124 139 56 chr1 184130850 184131245 -58533108 - MSTA LTR MaLR 0 428 1 2815 208 66 10 chr1 184131245 184131665 -58532688 + MER67B LTR ERV1 192 658 -3 22 35 0 0 chr1 184131830 184131859 -58532494 + AT_rich Low_complexity Low_complexity 1 29 0 305 325 45 65 chr1 184131987 184132187 -58532166 - L3 LINE CR1 -494 1083 888 1532 203 3 0 chr1 184132375 184132661 -58531692 + AluJo SINE Alu 1 287 -25 288 70 0 0 chr1 184132679 184132722 -58531631 + (TA)n Simple_repeat Simple_repeat 2 44 0 987 223 23 4 chr1 184132764 184133029 -58531324 + L1MA4 LINE L1 6020 6289 -11 1722 131 0 8 chr1 184134025 184134292 -58530061 - AluSc SINE Alu 0 309 45 25 75 0 0 chr1 184134455 184134508 -58529845 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr1 184134715 184134736 -58529617 + AT_rich Low_complexity Low_complexity 1 21 0 2573 114 46 2 chr1 184134751 184135182 -58529171 + L1PA13 LINE L1 5712 6161 -2 32 67 0 0 chr1 184135623 184135683 -58528670 + AT_rich Low_complexity Low_complexity 1 60 0 1543 151 53 0 chr1 184136718 184136983 -58527370 - AluSx SINE Alu -3 309 31 2256 154 200 108 chr1 184136986 184138347 -58526006 - pTR5 LTR ERV1 0 2438 743 22 0 0 0 chr1 184139227 184139249 -58525104 + AT_rich Low_complexity Low_complexity 1 22 0 900 187 0 6 chr1 184139503 184139669 -58524684 + AluSg/x SINE Alu 131 295 -15 1523 176 0 18 chr1 184140293 184140572 -58523781 + AluJb SINE Alu 36 309 -3 2179 88 47 0 chr1 184141764 184142061 -58522292 - AluY SINE Alu 0 311 1 3250 171 15 43 chr1 184142465 184143234 -58521119 - L1M2 LINE L1 -743 5403 4781 189 0 0 0 chr1 184143234 184143255 -58521098 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3250 171 15 43 chr1 184143255 184143413 -58520940 - L1M2 LINE L1 -1365 4781 4620 765 142 0 16 chr1 184143406 184143533 -58520820 + L1MA5A LINE L1 5526 5650 -647 * 543 245 0 36 chr1 184143517 184143656 -58520697 + L1PA16 LINE L1 6033 6166 0 * 2990 147 42 45 chr1 184143686 184144334 -58520019 + L1MA5A LINE L1 5651 6296 -1 198 313 229 36 chr1 184146708 184146874 -58517479 - MIR SINE MIR -30 232 35 294 245 19 38 chr1 184147296 184147402 -58516951 + GA-rich Low_complexity Low_complexity 3 106 0 608 304 42 14 chr1 184149648 184149865 -58514488 - MIR SINE MIR 0 262 40 4221 186 31 16 chr1 184150415 184151596 -58512757 - L1MA4 LINE L1 -691 5609 4405 309 179 18 0 chr1 184151593 184151649 -58512704 + L1MA4 LINE L1 5617 5673 -627 * 330 26 0 0 chr1 184151651 184151690 -58512663 + (TA)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr1 184151690 184151713 -58512640 + (CA)n Simple_repeat Simple_repeat 1 23 0 2391 183 14 22 chr1 184151713 184152017 -58512336 + L1MA4 LINE L1 5789 6089 -211 1774 141 28 0 chr1 184152017 184152300 -58512053 + AluSx SINE Alu 8 298 -14 2391 183 14 22 chr1 184152300 184152504 -58511849 + L1MA4 LINE L1 6089 6293 -7 1032 344 84 16 chr1 184152569 184153119 -58511234 + L2 LINE L2 2203 2805 -509 2031 71 18 4 chr1 184153119 184153400 -58510953 + L1PA7 LINE L1 5868 6152 -2 1032 344 84 16 chr1 184153400 184153494 -58510859 + L2 LINE L2 2805 2891 -423 1445 302 53 9 chr1 184154241 184154708 -58509645 - HERV16 LTR ERVL -3761 1235 748 1115 327 20 41 chr1 184154736 184155277 -58509076 - HERV16 LTR ERVL -4428 568 39 543 342 47 17 chr1 184155302 184155600 -58508753 - LTR16A LTR ERVL -108 342 36 189 0 0 0 chr1 184156009 184156030 -58508323 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 28 0 0 0 chr1 184156222 184156250 -58508103 + AT_rich Low_complexity Low_complexity 1 28 0 1888 216 37 55 chr1 184157857 184157899 -58506454 - MLT1D LTR MaLR 0 505 464 2347 74 0 13 chr1 184157899 184158211 -58506142 + AluY SINE Alu 1 308 -3 1888 216 37 55 chr1 184158211 184158682 -58505671 - MLT1D LTR MaLR -41 464 1 305 350 0 44 chr1 184158726 184158863 -58505490 + MIR SINE MIR 1 131 -131 2098 149 91 13 chr1 184158909 184159306 -58505047 - MSTA LTR MaLR 0 428 1 834 250 6 10 chr1 184159727 184159979 -58504374 + L1MB7 LINE L1 5594 5845 -339 1935 176 31 0 chr1 184160284 184160637 -58503716 - THE1B LTR MaLR 0 364 1 28 0 0 0 chr1 184161074 184161102 -58503251 + AT_rich Low_complexity Low_complexity 1 28 0 28 99 0 0 chr1 184161229 184161320 -58503033 + AT_rich Low_complexity Low_complexity 1 91 0 1486 73 49 0 chr1 184163032 184163237 -58501116 - L1PA5 LINE L1 -1 6153 5939 322 251 0 0 chr1 184164273 184164345 -58500008 - MLT1J LTR MaLR -321 157 65 290 274 12 0 chr1 184164351 184164435 -58499918 + (TA)n Simple_repeat Simple_repeat 1 85 0 5686 180 20 6 chr1 184164710 184166664 -58497689 - L1PA13 LINE L1 -11 6152 4179 6888 185 9 14 chr1 184166665 184168059 -58496294 + L1PA13 LINE L1 2789 4176 -1970 4464 187 58 2 chr1 184168152 184169068 -58495285 - L1MC1 LINE L1 0 6333 5367 1810 181 75 75 chr1 184169068 184169125 -58495228 + MLT2B2 LTR ERVL 1 57 -458 2348 61 0 14 chr1 184169125 184169421 -58494932 + AluY SINE Alu 3 294 -17 1810 181 75 75 chr1 184169421 184169815 -58494538 + MLT2B2 LTR ERVL 56 452 -63 35 41 0 0 chr1 184170023 184170072 -58494281 + AT_rich Low_complexity Low_complexity 1 49 0 1351 177 48 4 chr1 184170247 184170542 -58493811 - L1PA16 LINE L1 -6 6157 5824 2320 73 0 38 chr1 184170779 184171093 -58493260 + AluY SINE Alu 5 306 -5 21 36 0 0 chr1 184171468 184171496 -58492857 + AT_rich Low_complexity Low_complexity 1 28 0 294 303 50 68 chr1 184171644 184171865 -58492488 + L2 LINE L2 3032 3248 -65 1958 137 7 0 chr1 184172157 184172442 -58491911 - AluSp SINE Alu -24 289 3 689 215 0 54 chr1 184172662 184172811 -58491542 + MLT1A2 LTR MaLR 189 329 -45 531 269 23 19 chr1 184173327 184173543 -58490810 + L1ME3A LINE L1 5735 5951 -219 1056 139 10 30 chr1 184173760 184173961 -58490392 - L1MA4A LINE L1 -6 6297 6101 1008 62 28 7 chr1 184174187 184174331 -58490022 + L1MA3 LINE L1 6149 6295 -10 29 47 0 0 chr1 184176432 184176475 -58487878 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr1 184176548 184176580 -58487773 + AT_rich Low_complexity Low_complexity 1 32 0 476 184 26 9 chr1 184176698 184176812 -58487541 + L1MB5 LINE L1 6051 6166 -8 21 0 0 0 chr1 184176897 184176918 -58487435 + AT_rich Low_complexity Low_complexity 1 21 0 1376 168 18 7 chr1 184178676 184178956 -58485397 - L1MA4 LINE L1 -1 6299 6017 635 289 67 39 chr1 184179571 184180138 -58484215 - L1MEc LINE L1 -4582 1814 1232 1210 282 120 2 chr1 184180289 184180804 -58483549 + MER63C DNA MER1_type 253 828 -102 2395 133 0 18 chr1 184180806 184181206 -58483147 - L1PA13 LINE L1 -2 6161 5769 698 148 0 0 chr1 184181207 184181322 -58483031 + L1P LINE L1 3656 3770 -2376 254 277 50 10 chr1 184181332 184181433 -58482920 + MER63C DNA MER1_type 824 928 -2 216 0 0 0 chr1 184181685 184181709 -58482644 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 22 70 0 0 chr1 184182118 184182161 -58482192 + AT_rich Low_complexity Low_complexity 1 43 0 1673 52 0 22 chr1 184182251 184182481 -58481872 - L1PA4 LINE L1 0 6155 5931 2415 66 0 0 chr1 184182806 184183110 -58481243 + AluY SINE Alu 2 305 -6 27 0 0 0 chr1 184183114 184183141 -58481212 + AT_rich Low_complexity Low_complexity 1 27 0 239 353 104 12 chr1 184183395 184183568 -58480785 + L2 LINE L2 2835 3023 -249 216 196 22 0 chr1 184184076 184184122 -58480231 - L2 LINE L2 -13 3300 3254 1557 141 147 21 chr1 184185865 184186191 -58478162 + THE1C LTR MaLR 9 375 0 1730 198 73 6 chr1 184189060 184189414 -58474939 - MSTA LTR MaLR -50 378 1 2151 193 28 16 chr1 184189414 184189845 -58474508 - MSTA-int LTR MaLR 0 1651 1216 * 3754 204 11 0 chr1 184189841 184190562 -58473791 - MSTA-int LTR MaLR -922 729 1 978 267 24 4 chr1 184190562 184190813 -58473540 - MSTA LTR MaLR 0 426 171 1529 223 18 26 chr1 184191896 184192281 -58472072 - MLT1B LTR MaLR -8 382 1 4785 166 27 2 chr1 184192361 184193293 -58471060 + L1MA4 LINE L1 5344 6298 -2 25 51 0 0 chr1 184193293 184193332 -58471021 + AT_rich Low_complexity Low_complexity 1 39 0 210 118 0 0 chr1 184193467 184193501 -58470852 + (CA)n Simple_repeat Simple_repeat 1 34 0 279 0 0 0 chr1 184195962 184195993 -58468360 + (TC)n Simple_repeat Simple_repeat 2 32 0 1232 184 9 104 chr1 184196157 184196494 -58467859 + AluJo SINE Alu 1 305 -7 991 208 65 31 chr1 184197303 184197756 -58466597 - MLT1D LTR MaLR 0 505 1 1915 157 11 22 chr1 184197784 184198148 -58466205 - L1MA9 LINE L1 -33 6279 5920 779 208 0 22 chr1 184198146 184198329 -58466024 + L1 LINE L1 5172 5350 -796 * 1874 176 15 76 chr1 184199209 184199694 -58464659 - L1MA7 LINE L1 0 6291 5828 22 0 0 0 chr1 184199904 184199926 -58464427 + AT_rich Low_complexity Low_complexity 1 22 0 653 221 85 40 chr1 184200199 184200398 -58463955 - MER3 DNA MER1_type 0 209 2 290 138 81 24 chr1 184200486 184200609 -58463744 + (TA)n Simple_repeat Simple_repeat 2 131 0 1835 153 14 0 chr1 184200624 184200948 -58463405 + AluSx SINE Alu 1 328 0 206 345 103 0 chr1 184201797 184201855 -58462498 - MIR SINE MIR -162 100 37 24 67 0 0 chr1 184202940 184202985 -58461368 + AT_rich Low_complexity Low_complexity 1 45 0 902 301 47 20 chr1 184203750 184204046 -58460307 + MLT1E LTR MaLR 290 593 0 450 90 84 6 chr1 184204371 184204537 -58459816 + (TA)n Simple_repeat Simple_repeat 1 179 0 41 0 0 0 chr1 184204543 184204584 -58459769 + AT_rich Low_complexity Low_complexity 1 41 0 1475 133 43 143 chr1 184204617 184205031 -58459322 + THE1C LTR MaLR 3 375 0 2765 10 0 0 chr1 184205208 184205512 -58458841 - AluYb8 SINE Alu -14 304 1 25 51 0 0 chr1 184206008 184206047 -58458306 + AT_rich Low_complexity Low_complexity 1 39 0 471 279 70 42 chr1 184207489 184207704 -58456649 + L1MCc LINE L1 81 301 -6122 268 364 31 0 chr1 184208469 184208598 -58455755 + L2 LINE L2 3181 3313 0 465 269 105 75 chr1 184208758 184209063 -58455290 - L1ME LINE L1 -459 5711 5398 440 318 77 50 chr1 184209048 184209388 -58454965 - L1MCc LINE L1 -5115 1308 960 * 333 351 92 29 chr1 184209535 184209851 -58454502 - L1MCc LINE L1 -5825 598 263 351 96 0 0 chr1 184210420 184210472 -58453881 + (TA)n Simple_repeat Simple_repeat 2 53 0 2491 48 0 3 chr1 184211636 184211931 -58452422 + AluY SINE Alu 1 294 -17 1016 264 57 48 chr1 184212042 184212615 -58451738 - L1MC2 LINE L1 -344 5818 5265 2051 119 3 3 chr1 184212678 184212971 -58451382 - AluSg SINE Alu -17 293 1 713 269 106 35 chr1 184212972 184213492 -58450861 - L1MC2 LINE L1 -982 5164 4608 2052 121 3 0 chr1 184213975 184214273 -58450080 - AluSp SINE Alu -14 299 1 254 286 0 22 chr1 184214653 184214744 -58449609 + MERVL LTR ERVL 3910 3998 -1487 1142 121 24 0 chr1 184214744 184214910 -58449443 + THE1C LTR MaLR 6 175 -200 8442 153 14 4 chr1 184214911 184216379 -58447974 - L1P3 LINE L1 -2148 4313 2832 3004 251 126 45 chr1 184216389 184217330 -58447023 - L1P3 LINE L1 -4799 1662 799 1775 125 11 7 chr1 184217330 184217610 -58446743 + AluSq SINE Alu 1 281 -32 387 0 0 0 chr1 184217612 184217655 -58446698 + (CAT)n Simple_repeat Simple_repeat 2 44 0 3004 251 126 45 chr1 184217655 184218055 -58446298 - L1P3 LINE L1 -5662 799 209 290 338 63 29 chr1 184218062 184218269 -58446084 + MERVL LTR ERVL 4455 4668 -1096 1471 197 97 0 chr1 184218682 184218992 -58445361 - MER2 DNA MER2_type -5 340 1 1885 209 55 2 chr1 184219044 184219445 -58444908 - MLT2B1 LTR ERVL -98 422 1 297 89 0 0 chr1 184220542 184220587 -58443766 + (CA)n Simple_repeat Simple_repeat 1 45 0 1998 291 39 15 chr1 184220740 184221483 -58442870 + L1MEc LINE L1 50 810 -5586 431 261 92 0 chr1 184221547 184221677 -58442676 + L1MA10 LINE L1 6177 6318 -16 2114 90 35 0 chr1 184221677 184221989 -58442364 + L1PA13 LINE L1 5841 6163 0 269 276 26 0 chr1 184222407 184222483 -58441870 - MLT1I LTR MaLR -261 148 71 1689 243 70 7 chr1 184222896 184223336 -58441017 + LTR53 LTR ERVL 2 469 -50 1231 220 42 56 chr1 184223936 184224295 -58440058 - MLT1A1 LTR MaLR 0 365 12 252 103 52 0 chr1 184224479 184224537 -58439816 + (TA)n Simple_repeat Simple_repeat 1 61 0 29 47 0 0 chr1 184224548 184224591 -58439762 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr1 184225388 184225410 -58438943 + AT_rich Low_complexity Low_complexity 1 22 0 2093 77 11 18 chr1 184225415 184225733 -58438620 + AluY SINE Alu 1 316 0 31 26 0 0 chr1 184225750 184225788 -58438565 + AT_rich Low_complexity Low_complexity 1 38 0 457 264 37 129 chr1 184226505 184226831 -58437522 - L1ME LINE L1 -399 5771 5476 324 312 53 76 chr1 184226938 184227294 -58437059 - L1ME LINE L1 -824 5322 4975 2196 102 3 0 chr1 184227317 184227612 -58436741 - AluY SINE Alu -5 306 11 269 109 22 0 chr1 184228083 184228129 -58436224 + CT-rich Low_complexity Low_complexity 2 48 0 1815 219 71 2 chr1 184228153 184228546 -58435807 + MSTB LTR MaLR 3 422 -4 417 39 0 0 chr1 184228551 184228602 -58435751 + (TG)n Simple_repeat Simple_repeat 2 52 0 198 0 0 0 chr1 184228952 184228974 -58435379 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 450 65 0 0 chr1 184229869 184229931 -58434422 + (TG)n Simple_repeat Simple_repeat 1 62 0 1929 209 21 39 chr1 184230452 184230969 -58433384 - L1MA6 LINE L1 -6 6294 5787 3021 114 11 13 chr1 184230969 184231423 -58432930 + MLT2A2 LTR ERVL 1 453 0 21696 100 7 2 chr1 184231427 184234413 -58429940 + HERVL-A2 LTR ERVL 3 3005 -2649 5612 106 1 3 chr1 184234411 184235194 -58429159 + HERVL LTR ERVL 4448 5229 -425 * 5644 141 26 4 chr1 184236112 184237598 -58426755 - L1PA11 LINE L1 -1 6173 4655 262 226 0 0 chr1 184237978 184238031 -58426322 + MIR SINE MIR 89 141 -121 217 196 22 0 chr1 184238092 184238138 -58426215 + (TTA)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr1 184238160 184238181 -58426172 + AT_rich Low_complexity Low_complexity 1 21 0 6201 41 0 1 chr1 184238667 184239424 -58424929 - L1PA4 LINE L1 -1 6154 5399 5195 52 6 0 chr1 184239421 184240078 -58424275 + L1P LINE L1 4310 4970 -1176 * 251 154 0 19 chr1 184241175 184241227 -58423126 + CT-rich Low_complexity Low_complexity 2 52 0 1244 128 0 66 chr1 184242321 184242564 -58421789 - AluSg/x SINE Alu -1 311 85 1835 122 3 27 chr1 184243149 184243444 -58420909 - AluSg SINE Alu -22 288 1 1844 90 0 114 chr1 184243797 184244131 -58420222 + AluSc SINE Alu 1 296 -13 366 165 0 0 chr1 184244963 184245042 -58419311 + GA-rich Low_complexity Low_complexity 3 81 0 228 296 25 37 chr1 184245629 184245710 -58418643 - MIR SINE MIR -15 247 168 22 35 0 0 chr1 184245944 184245973 -58418380 + AT_rich Low_complexity Low_complexity 1 29 0 1517 201 10 20 chr1 184247068 184247372 -58416981 - AluJo SINE Alu -11 301 1 1277 182 123 3 chr1 184247462 184247780 -58416573 - MER46B DNA MER2_type -4 232 2 27 0 0 0 chr1 184247945 184247972 -58416381 + AT_rich Low_complexity Low_complexity 1 27 0 38 68 0 0 chr1 184250757 184250830 -58413523 + AT_rich Low_complexity Low_complexity 1 73 0 32 0 0 0 chr1 184250853 184250885 -58413468 + AT_rich Low_complexity Low_complexity 1 32 0 1949 146 18 0 chr1 184250958 184251293 -58413060 - L1MA2 LINE L1 -8 6296 5956 265 267 96 20 chr1 184251448 184251594 -58412759 + L1ME LINE L1 2653 2809 -3337 687 295 67 22 chr1 184251668 184252177 -58412176 + L1ME LINE L1 4408 4939 -1207 991 265 60 113 chr1 184252245 184252991 -58411362 - MER21B LTR ERV1 -149 714 8 1076 251 14 63 chr1 184252993 184253343 -58411010 + LTR52 LTR ERVL 53 385 -36 685 269 66 20 chr1 184253634 184253993 -58410360 + L1ME LINE L1 5205 5579 -585 28 0 0 0 chr1 184254150 184254178 -58410175 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr1 184254308 184254367 -58409986 + AT_rich Low_complexity Low_complexity 1 59 0 30 27 0 0 chr1 184254399 184254436 -58409917 + AT_rich Low_complexity Low_complexity 1 37 0 2080 131 0 3 chr1 184254540 184254846 -58409507 + AluSg SINE Alu 1 305 -5 443 337 31 41 chr1 184256996 184257287 -58407066 - ERVL LTR ERVL -1595 4169 3882 207 0 0 0 chr1 184257314 184257337 -58407016 + (A)n Simple_repeat Simple_repeat 1 23 0 479 330 69 31 chr1 184257851 184258200 -58406153 - ERVL LTR ERVL -2793 2971 2610 6711 62 5 1 chr1 184258209 184259090 -58405263 + L1PA5 LINE L1 5271 6154 0 366 274 34 8 chr1 184259997 184260114 -58404239 - LTR67 LTR ERVL -2 555 436 2064 128 7 0 chr1 184260354 184260651 -58403702 + AluSg SINE Alu 1 299 -11 579 0 0 0 chr1 184260726 184260795 -58403558 + L1PA3 LINE L1 6084 6152 -3 21 57 0 0 chr1 184261180 184261215 -58403138 + AT_rich Low_complexity Low_complexity 1 35 0 455 273 29 7 chr1 184262034 184262173 -58402180 + MLT1J2 LTR MaLR 4 145 -305 497 275 96 0 chr1 184262832 184262999 -58401354 - LTR67 LTR ERVL 0 557 375 187 164 45 75 chr1 184263315 184263382 -58400971 - L3 LINE CR1 -318 1259 1195 301 75 0 21 chr1 184264181 184264235 -58400118 + L1PA13 LINE L1 6112 6164 -1 41 0 0 0 chr1 184264456 184264497 -58399856 + AT_rich Low_complexity Low_complexity 1 41 0 324 277 7 29 chr1 184264742 184264879 -58399474 + (TA)n Simple_repeat Simple_repeat 2 135 0 232 346 77 0 chr1 184265234 184265338 -58399015 - MIR SINE MIR -30 232 121 234 290 28 84 chr1 184265590 184265697 -58398656 + L2 LINE L2 3168 3268 -4 222 37 0 0 chr1 184266735 184266762 -58397591 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 333 309 88 7 chr1 184267193 184267329 -58397024 + MER20B DNA MER1_type 4 150 -633 1895 164 21 26 chr1 184267565 184267942 -58396411 + THE1C LTR MaLR 1 375 0 206 341 124 18 chr1 184267950 184268176 -58396177 - L2 LINE L2 -19 3294 3045 219 36 0 0 chr1 184268194 184268222 -58396131 + (TTG)n Simple_repeat Simple_repeat 2 29 0 614 231 0 0 chr1 184268240 184268361 -58395992 - FLAM_C SINE Alu -12 121 1 2031 118 3 0 chr1 184270159 184270446 -58393907 + AluSg SINE Alu 15 302 -8 1597 265 145 45 chr1 184270448 184271840 -58392513 - Charlie2a DNA MER1_type -48 2814 1237 4311 120 24 1 chr1 184271840 184272514 -58391839 + L1PA13 LINE L1 5474 6162 -1 1597 265 145 45 chr1 184272514 184272732 -58391621 - Charlie2a DNA MER1_type -1625 1237 1042 1380 282 136 32 chr1 184272774 184273618 -58390735 - Charlie2a DNA MER1_type -1892 970 39 326 259 91 56 chr1 184274796 184274939 -58389414 + MIR SINE MIR 75 222 -40 1472 187 34 52 chr1 184274975 184275360 -58388993 + L1MA8 LINE L1 5911 6288 -3 270 295 29 48 chr1 184275600 184275705 -58388648 - L2 LINE L2 -1 3271 3169 402 311 104 21 chr1 184275718 184275911 -58388442 - MIR SINE MIR -1 261 53 1860 189 113 54 chr1 184275979 184276499 -58387854 - MER34B LTR ERV1 -3 562 12 33 43 0 0 chr1 184276997 184277044 -58387309 + AT_rich Low_complexity Low_complexity 1 47 0 287 234 0 0 chr1 184278102 184278166 -58386187 + (TG)n Simple_repeat Simple_repeat 2 65 0 26 88 0 0 chr1 184279967 184280035 -58384318 + AT_rich Low_complexity Low_complexity 1 68 0 219 250 0 0 chr1 184280873 184280941 -58383412 + (TA)n Simple_repeat Simple_repeat 2 69 0 21 0 0 0 chr1 184281121 184281142 -58383211 + AT_rich Low_complexity Low_complexity 1 21 0 989 208 14 5 chr1 184281217 184281433 -58382920 - L1PA16 LINE L1 -1067 5079 4862 * 5054 157 33 11 chr1 184281425 184282296 -58382057 + L1PA16 LINE L1 5086 5986 -180 1975 150 3 3 chr1 184282296 184282596 -58381757 + AluSx SINE Alu 1 300 -12 5054 157 33 11 chr1 184282596 184282779 -58381574 + L1PA16 LINE L1 5986 6164 -2 2302 206 30 11 chr1 184283122 184283661 -58380692 - L1 LINE L1 -2329 3817 3269 231 36 0 0 chr1 184284639 184284667 -58379686 + (T)n Simple_repeat Simple_repeat 1 28 0 254 275 99 0 chr1 184285689 184285780 -58378573 - MLT1J2 LTR MaLR -292 158 59 185 349 0 30 chr1 184286091 184286157 -58378196 + L2 LINE L2 2485 2548 -766 207 0 0 0 chr1 184286415 184286438 -58377915 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1302 195 0 27 chr1 184286442 184286704 -58377649 - AluJb SINE Alu -37 275 21 1121 43 0 7 chr1 184287324 184287465 -58376888 - L1PA7 LINE L1 0 6154 6015 250 216 0 0 chr1 184287472 184287523 -58376830 - L1MC/D LINE L1 -2059 5749 5699 454 97 21 32 chr1 184287640 184287733 -58376620 - L1MA1 LINE L1 -165 6137 6046 181 372 32 21 chr1 184288324 184288418 -58375935 + L3 LINE CR1 1404 1498 -79 2377 43 0 0 chr1 184288481 184288797 -58375556 + AluY SINE Alu 1 316 0 23 68 0 0 chr1 184288947 184288991 -58375362 + AT_rich Low_complexity Low_complexity 1 44 0 481 228 79 55 chr1 184292018 184292220 -58372133 + Charlie7 DNA MER1_type 35 241 -2371 22 0 0 0 chr1 184292505 184292527 -58371826 + AT_rich Low_complexity Low_complexity 1 22 0 291 276 173 11 chr1 184292586 184292771 -58371582 - MER46C DNA MER2_type -1 337 123 25 0 0 0 chr1 184293019 184293044 -58371309 + AT_rich Low_complexity Low_complexity 1 25 0 2209 108 7 0 chr1 184294509 184294814 -58369539 + AluSx SINE Alu 1 307 -5 330 115 0 0 chr1 184294815 184294876 -58369477 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr1 184295629 184295650 -58368703 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 184295767 184295796 -58368557 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 184297546 184297568 -58366785 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr1 184299676 184299712 -58364641 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr1 184299950 184299976 -58364377 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr1 184300097 184300121 -58364232 + AT_rich Low_complexity Low_complexity 1 24 0 184 333 98 10 chr1 184300467 184300569 -58363784 - MIR SINE MIR -111 151 41 180 0 0 0 chr1 184300590 184300610 -58363743 + (TA)n Simple_repeat Simple_repeat 2 21 0 220 0 27 54 chr1 184301040 184301077 -58363276 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr1 184302809 184302840 -58361513 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr1 184303796 184303830 -58360523 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 322 75 10 chr1 184303830 184304029 -58360324 + LTR43 LTR ERV1 223 434 -168 27 0 0 0 chr1 184304334 184304361 -58359992 + AT_rich Low_complexity Low_complexity 1 27 0 626 218 59 0 chr1 184304389 184304559 -58359794 - L1MA4 LINE L1 -4 6296 6117 2074 179 16 35 chr1 184305277 184305438 -58358915 - MER70-int LTR ERVL -1887 3136 2974 2367 161 107 0 chr1 184305438 184305904 -58358449 - LTR44 LTR ERV1 -3 516 1 2074 179 16 35 chr1 184305904 184306173 -58358180 - MER70-int LTR ERVL -2049 2974 2714 6330 220 47 23 chr1 184306521 184308068 -58356285 - MER70-int LTR ERVL -2296 2727 1144 791 215 27 11 chr1 184308073 184308259 -58356094 - L1 LINE L1 -2424 3722 3534 1872 250 30 8 chr1 184308276 184308940 -58355413 + L1M4 LINE L1 2593 3271 -2875 23 33 0 0 chr1 184309328 184309358 -58354995 + AT_rich Low_complexity Low_complexity 1 30 0 254 270 22 11 chr1 184309499 184309588 -58354765 + L1M4 LINE L1 3494 3583 -2563 1180 277 92 8 chr1 184309709 184310196 -58354157 + L1M4 LINE L1 4569 5096 -1050 2271 70 6 19 chr1 184310212 184310527 -58353826 + AluY SINE Alu 1 311 0 608 304 42 14 chr1 184361254 184361471 -58302882 + MIR SINE MIR 40 262 0 294 245 19 38 chr1 184363717 184363823 -58300530 + CT-rich Low_complexity Low_complexity 3 106 0 198 313 229 36 chr1 184364245 184364411 -58299942 + MIR SINE MIR 35 232 -30 2990 147 42 45 chr1 184366784 184367432 -58296921 - L1MA5A LINE L1 -1 6296 5651 543 245 0 36 chr1 184367462 184367601 -58296752 - L1PA16 LINE L1 0 6166 6033 * 795 143 0 8 chr1 184367585 184367711 -58296642 - L1MA5A LINE L1 -647 5650 5526 * 3461 166 15 42 chr1 184367704 184367862 -58296491 + L1M2 LINE L1 4620 4781 -1492 189 0 0 0 chr1 184367862 184367883 -58296470 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3461 166 15 42 chr1 184367883 184368653 -58295700 + L1M2 LINE L1 4781 5530 -743 2179 88 47 0 chr1 184369057 184369354 -58294999 + AluY SINE Alu 1 311 0 1523 176 0 18 chr1 184370546 184370825 -58293528 - AluJb SINE Alu -3 309 36 900 187 0 6 chr1 184371449 184371615 -58292738 - AluSg/x SINE Alu -15 297 133 22 0 0 0 chr1 184371869 184371891 -58292462 + AT_rich Low_complexity Low_complexity 1 22 0 2286 154 200 107 chr1 184372771 184374131 -58290222 + pTR5 LTR ERV1 743 2438 0 1584 143 53 0 chr1 184374134 184374399 -58289954 + AluSx SINE Alu 31 309 -3 32 67 0 0 chr1 184375434 184375494 -58288859 + AT_rich Low_complexity Low_complexity 1 60 0 2573 114 46 2 chr1 184375937 184376368 -58287985 - L1PA13 LINE L1 -2 6161 5712 26 74 0 0 chr1 184376611 184376665 -58287688 + AT_rich Low_complexity Low_complexity 1 54 0 1708 132 0 8 chr1 184376828 184377093 -58287260 + AluSc SINE Alu 45 307 -2 987 223 23 4 chr1 184378090 184378355 -58285998 - L1MA4 LINE L1 -11 6289 6020 252 77 0 0 chr1 184378397 184378436 -58285917 + (TA)n Simple_repeat Simple_repeat 1 39 0 1542 202 3 0 chr1 184378454 184378741 -58285612 - AluJo SINE Alu -24 288 1 295 325 45 65 chr1 184378929 184379129 -58285224 + L3 LINE CR1 888 1083 -494 22 35 0 0 chr1 184379258 184379287 -58285066 + AT_rich Low_complexity Low_complexity 1 29 0 2815 208 66 10 chr1 184379452 184379872 -58284481 - MER67B LTR ERV1 -3 658 192 1724 127 139 56 chr1 184379872 184380267 -58284086 + MSTA LTR MaLR 1 428 0 2815 208 66 10 chr1 184380267 184380456 -58283897 - MER67B LTR ERV1 -469 192 15 1497 236 59 5 chr1 184380961 184381368 -58282985 - L1MA10 LINE L1 -871 5275 4847 * 2151 201 18 48 chr1 184381366 184381924 -58282429 + L1MA10 LINE L1 5266 5806 -362 1564 188 36 19 chr1 184381925 184382287 -58282066 + L1MA10 LINE L1 5964 6331 -3 2271 53 3 7 chr1 184382352 184382669 -58281684 + AluSp SINE Alu 1 316 0 183 204 0 0 chr1 184382756 184382810 -58281543 + (TA)n Simple_repeat Simple_repeat 1 54 0 215 182 23 0 chr1 184383101 184383145 -58281208 + (TA)n Simple_repeat Simple_repeat 2 46 0 2264 95 0 9 chr1 184383233 184383549 -58280804 - AluSq SINE Alu 0 313 1 27 62 0 0 chr1 184383926 184383974 -58280379 + AT_rich Low_complexity Low_complexity 1 48 0 626 308 50 31 chr1 184385879 184386200 -58278153 + ERVL LTR ERVL 4314 4640 -1124 284 328 37 30 chr1 184386503 184386637 -58277716 - L2 LINE L2 -18 3295 3161 * 303 295 128 19 chr1 184386634 184386790 -58277563 - L2 LINE L2 -780 2534 2362 672 104 19 0 chr1 184387108 184387214 -58277139 + AluY SINE Alu 204 311 0 25 31 0 0 chr1 184387603 184387635 -58276718 + AT_rich Low_complexity Low_complexity 1 32 0 2121 111 13 3 chr1 184387724 184388030 -58276323 - AluSx SINE Alu -2 310 2 27 0 0 0 chr1 184388619 184388646 -58275707 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr1 184388899 184388919 -58275434 + (CA)n Simple_repeat Simple_repeat 2 21 0 4271 226 84 39 chr1 184388919 184389869 -58274484 - L1MB7 LINE L1 -40 6144 5238 2134 120 7 3 chr1 184389869 184390178 -58274175 + AluSg SINE Alu 1 310 0 4271 226 84 39 chr1 184390178 184391647 -58272706 - L1MB7 LINE L1 -946 5238 3626 594 148 33 16 chr1 184393050 184393172 -58271181 - MER58 DNA MER1_type -2223 197 74 778 227 42 5 chr1 184393199 184393415 -58270938 - L1MA8 LINE L1 -24 6267 6044 390 307 87 39 chr1 184393524 184393763 -58270590 - MIR SINE MIR -5 257 8 241 113 0 113 chr1 184393967 184394020 -58270333 + Alu SINE Alu 119 165 -135 465 291 140 16 chr1 184394120 184394484 -58269869 + HAL1 LINE L1 1562 1970 -537 23 33 0 0 chr1 184395443 184395473 -58268880 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr1 184395519 184395551 -58268802 + AT_rich Low_complexity Low_complexity 1 32 0 456 278 81 13 chr1 184395678 184395912 -58268441 + L1MC5 LINE L1 7636 7885 -76 2395 266 98 53 chr1 184396448 184396625 -58267728 + L1MB8 LINE L1 675 843 -5539 1760 116 76 4 chr1 184396625 184396901 -58267452 + AluSx SINE Alu 1 296 -16 2395 266 98 53 chr1 184396901 184399719 -58264634 + L1MB8 LINE L1 843 3960 -2422 2138 112 0 34 chr1 184399719 184400040 -58264313 + AluSg SINE Alu 1 310 0 2395 266 98 53 chr1 184400040 184400306 -58264047 + L1MB8 LINE L1 3960 4213 -2169 1857 269 33 52 chr1 184400316 184401296 -58263057 + L1MB8 LINE L1 4467 5427 -955 825 186 25 6 chr1 184401296 184401457 -58262896 + LTR32 LTR ERVL 232 395 -76 382 172 21 76 chr1 184401472 184401617 -58262736 + L1MB8 LINE L1 5426 5562 -820 553 194 0 9 chr1 184401764 184401872 -58262481 - LOR1b-int LTR ERV1 -2213 5907 5801 * 4746 125 9 21 chr1 184401862 184402668 -58261685 - LOR1b-int LTR ERV1 -2596 5524 4729 1794 220 10 45 chr1 184402679 184403128 -58261225 + MER52A LTR ERV1 264 774 -981 434 188 10 10 chr1 184403128 184403224 -58261129 - LOR1b-int LTR ERV1 -6039 2081 1986 300 114 14 29 chr1 184403225 184403295 -58261058 + (TTC)n Simple_repeat Simple_repeat 2 70 0 9486 126 75 12 chr1 184403311 184404993 -58259360 - LOR1b-int LTR ERV1 -6131 1989 203 1977 169 25 16 chr1 184405003 184405370 -58258983 - LOR1b-int LTR ERV1 -7749 371 2 1836 174 66 50 chr1 184405371 184405809 -58258544 - LOR1b LTR ERV1 0 461 17 1899 269 50 10 chr1 184405858 184406475 -58257878 + L1MB8 LINE L1 5727 6368 -46 214 125 42 0 chr1 184406525 184406573 -58257780 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 35 0 0 chr1 184406585 184406614 -58257739 + AT_rich Low_complexity Low_complexity 1 29 0 328 198 44 66 chr1 184406624 184406715 -58257638 - L1MC4 LINE L1 -1339 6703 6615 495 126 19 48 chr1 184406715 184406818 -58257535 + L1MC/D LINE L1 5508 5607 -726 447 219 93 13 chr1 184406902 184407053 -58257300 + MER20B DNA MER1_type 616 778 -5 2220 168 31 16 chr1 184407835 184408282 -58256071 + L1MC/D LINE L1 5350 5803 -530 196 231 0 39 chr1 184408602 184408654 -58255699 - L2 LINE L2 -71 3242 3193 461 305 144 29 chr1 184408707 184409232 -58255121 + MLT1G1 LTR MaLR 6 555 0 321 340 49 12 chr1 184409940 184410102 -58254251 + MER5A DNA MER1_type 1 168 -21 22 0 0 0 chr1 184410547 184410569 -58253784 + AT_rich Low_complexity Low_complexity 1 22 0 38 39 0 0 chr1 184412062 184412114 -58252239 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr1 184412330 184412368 -58251985 + AT_rich Low_complexity Low_complexity 1 38 0 1088 74 7 7 chr1 184412382 184412531 -58251822 - HERVL-A1 LTR ERVL -752 4902 4754 25 90 0 0 chr1 184412588 184412655 -58251698 + AT_rich Low_complexity Low_complexity 1 67 0 1287 90 28 0 chr1 184412662 184412839 -58251514 - HERVL-A1 LTR ERVL -2106 3548 3367 10599 88 14 18 chr1 184413690 184414136 -58250217 - HERVL-A1 LTR ERVL -150 5504 5058 2192 91 24 7 chr1 184414136 184414433 -58249920 - AluSx SINE Alu -10 302 1 10599 88 14 18 chr1 184414433 184415460 -58248893 - HERVL-A1 LTR ERVL -596 5058 4037 9916 72 7 1 chr1 184415560 184416853 -58247500 - HERVL-A1 LTR ERVL -1833 3821 2522 * 16694 87 10 3 chr1 184416846 184419062 -58245291 - HERVL-A1 LTR ERVL -3421 2233 2 2451 145 20 31 chr1 184419063 184419512 -58244841 - MLT2A1 LTR ERVL 0 444 1 41 21 0 0 chr1 184420054 184420102 -58244251 + AT_rich Low_complexity Low_complexity 1 48 0 1183 259 106 35 chr1 184420108 184420514 -58243839 - MLT2B1 LTR ERVL -85 435 1 304 323 64 32 chr1 184421006 184421226 -58243127 + MIR SINE MIR 14 240 -22 284 294 71 0 chr1 184421260 184421345 -58243008 - L2 LINE L2 -33 3239 3149 489 310 114 0 chr1 184421689 184421873 -58242480 - MIR SINE MIR -48 214 10 2571 223 48 32 chr1 184422191 184422856 -58241497 + MER76 LTR ERV 13 688 0 233 232 14 94 chr1 184422956 184423094 -58241259 + L1M4 LINE L1 4483 4609 -1537 25 31 0 0 chr1 184423997 184424029 -58240324 + AT_rich Low_complexity Low_complexity 1 32 0 360 329 88 18 chr1 184424120 184424290 -58240063 + MIR SINE MIR 8 189 -73 23 0 0 0 chr1 184424299 184424322 -58240031 + AT_rich Low_complexity Low_complexity 1 23 0 1157 240 100 57 chr1 184425001 184425543 -58238810 + MLT1E LTR MaLR 2 581 -8 1392 254 153 57 chr1 184425575 184426328 -58238025 - LTR1B LTR ERV1 0 826 2 367 289 112 33 chr1 184427280 184427585 -58236768 + L1MEc LINE L1 1895 2223 -4173 1775 56 0 0 chr1 184427632 184427847 -58236506 + AluY SINE Alu 86 300 -11 248 261 60 95 chr1 184427901 184428185 -58236168 + L1MEc LINE L1 2298 2571 -3644 2266 156 18 54 chr1 184428851 184429402 -58234951 + L1 LINE L1 4222 4752 -1394 299 326 46 28 chr1 184429458 184429676 -58234677 + L1ME3A LINE L1 5821 6042 -128 23 33 0 0 chr1 184430076 184430106 -58234247 + AT_rich Low_complexity Low_complexity 1 30 0 1152 274 149 8 chr1 184430394 184430890 -58233463 - L2 LINE L2 -845 2469 1904 181 114 29 29 chr1 184431228 184431263 -58233090 + L2 LINE L2 3178 3212 -101 10010 211 40 24 chr1 184432243 184432603 -58231750 - L1PB4 LINE L1 -3 6856 6503 360 0 0 0 chr1 184432603 184432643 -58231710 + (TA)n Simple_repeat Simple_repeat 1 40 0 10010 211 40 24 chr1 184432643 184433640 -58230713 - L1PB4 LINE L1 -356 6503 5523 3104 145 83 29 chr1 184433640 184434221 -58230132 + LTR9 LTR ERV1 1 612 0 10010 211 40 24 chr1 184434221 184434390 -58229963 - L1PB4 LINE L1 -1336 5523 5358 1521 220 0 3 chr1 184434390 184434690 -58229663 + AluJo SINE Alu 5 303 -9 10010 211 40 24 chr1 184434690 184436782 -58227571 - L1PB4 LINE L1 -1501 5358 3184 1049 146 0 0 chr1 184436783 184436947 -58227406 + AluSg/x SINE Alu 149 312 0 1024 234 29 41 chr1 184436953 184437281 -58227072 - L1PB4 LINE L1 -3650 3199 2871 2933 98 6 53 chr1 184437281 184437770 -58226583 - L1PB1 LINE L1 -5 6146 5681 1024 234 29 41 chr1 184437770 184437992 -58226361 - L1PB4 LINE L1 -3978 2871 2648 189 74 0 0 chr1 184438143 184438170 -58226183 + (CA)n Simple_repeat Simple_repeat 2 28 0 360 0 0 0 chr1 184439027 184439067 -58225286 + (CA)n Simple_repeat Simple_repeat 2 41 0 408 216 23 0 chr1 184439284 184439372 -58224981 - L1MD3 LINE L1 -14 7981 7892 4228 239 51 18 chr1 184440556 184442173 -58222180 - L1MC2 LINE L1 -286 6476 4749 2069 78 0 46 chr1 184442173 184442454 -58221899 + AluY SINE Alu 29 296 -15 4228 239 51 18 chr1 184442454 184443251 -58221102 - L1MC2 LINE L1 -2013 4749 3979 42 36 0 0 chr1 184443296 184443352 -58221001 + AT_rich Low_complexity Low_complexity 1 56 0 1508 193 256 24 chr1 184443355 184443952 -58220401 - L1MC2 LINE L1 -4200 2364 1629 1011 207 29 119 chr1 184444392 184444803 -58219550 + MLT1A2 LTR MaLR 1 374 0 2156 226 23 88 chr1 184445559 184446266 -58218087 + MER76 LTR ERV 1 661 -27 640 213 7 0 chr1 184446533 184446669 -58217684 - L1MC3 LINE L1 -386 7399 7263 1296 313 71 47 chr1 184446671 184447668 -58216685 - L1MC2 LINE L1 -4961 1084 64 190 382 45 0 chr1 184448105 184448194 -58216159 + L2 LINE L2 2966 3058 -255 297 314 57 31 chr1 184448238 184448397 -58215956 + L2 LINE L2 3151 3313 0 474 290 65 21 chr1 184448616 184448802 -58215551 - MLT1J LTR MaLR -75 436 243 251 321 36 36 chr1 184449136 184449220 -58215133 + L2 LINE L2 3184 3267 -5 24 32 0 0 chr1 184449240 184449271 -58215082 + AT_rich Low_complexity Low_complexity 1 31 0 1652 172 88 38 chr1 184449274 184449617 -58214736 - THE1B LTR MaLR 0 364 5 8508 158 20 9 chr1 184449623 184451101 -58213252 - THE1B-int LTR MaLR -2 1578 85 467 148 0 40 chr1 184451208 184451309 -58213044 - THE1B-int LTR MaLR -1483 97 1 2032 142 73 14 chr1 184451309 184451653 -58212700 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr1 184451715 184451739 -58212614 + AT_rich Low_complexity Low_complexity 1 24 0 29 70 0 0 chr1 184451871 184451928 -58212425 + AT_rich Low_complexity Low_complexity 1 57 0 4676 172 44 13 chr1 184451928 184453203 -58211150 - L1PA16 LINE L1 -3 6163 4843 627 235 27 0 chr1 184453204 184453391 -58210962 - L1MA8 LINE L1 0 6291 6100 208 261 154 0 chr1 184453546 184453611 -58210742 + L2 LINE L2 3202 3276 -37 2068 103 4 0 chr1 184453926 184454207 -58210146 + AluSc SINE Alu 5 286 -23 6759 62 5 1 chr1 184454919 184455800 -58208553 - L1PA5 LINE L1 0 6154 5271 479 330 69 31 chr1 184455809 184456158 -58208195 + ERVL LTR ERVL 2610 2971 -2793 2991 129 6 10 chr1 184456688 184457167 -58207186 + L1PA15 LINE L1 5689 6165 0 417 233 32 101 chr1 184458239 184458428 -58205925 - L1ME2 LINE L1 -9 6155 5980 1528 260 56 53 chr1 184458432 184459093 -58205260 - L1M4c LINE L1 -4832 2023 1420 1529 201 13 13 chr1 184459130 184459434 -58204919 - AluJb SINE Alu -4 308 5 466 241 9 0 chr1 184459446 184459562 -58204791 - L1M4c LINE L1 -5431 1428 1312 698 148 0 0 chr1 184459780 184459895 -58204458 - L1P LINE L1 -2376 3770 3656 2395 133 0 18 chr1 184459896 184460296 -58204057 + L1PA13 LINE L1 5769 6161 -2 1210 282 120 2 chr1 184460298 184460813 -58203540 - MER63C DNA MER1_type -102 828 253 663 293 65 35 chr1 184460964 184461530 -58202823 + L1MEc LINE L1 1232 1814 -4582 1376 168 18 7 chr1 184462144 184462424 -58201929 + L1MA4 LINE L1 6017 6299 -1 188 273 73 0 chr1 184463832 184463887 -58200466 + MIR SINE MIR 124 182 -80 21 0 0 0 chr1 184464181 184464202 -58200151 + AT_rich Low_complexity Low_complexity 1 21 0 476 184 26 9 chr1 184464286 184464400 -58199953 - L1MB5 LINE L1 -8 6166 6051 25 31 0 0 chr1 184464518 184464550 -58199803 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr1 184464623 184464666 -58199687 + AT_rich Low_complexity Low_complexity 1 43 0 1008 62 28 7 chr1 184466767 184466911 -58197442 - L1MA3 LINE L1 -10 6295 6149 1056 139 10 30 chr1 184467137 184467338 -58197015 + L1MA4A LINE L1 6101 6297 -6 537 267 23 18 chr1 184467555 184467772 -58196581 - L1ME3A LINE L1 -219 5951 5734 689 215 0 54 chr1 184468287 184468436 -58195917 - MLT1A2 LTR MaLR -45 329 189 1958 137 7 0 chr1 184468656 184468941 -58195412 + AluSp SINE Alu 3 289 -24 291 284 63 72 chr1 184469232 184469454 -58194899 - L2 LINE L2 -62 3251 3032 21 36 0 0 chr1 184469602 184469630 -58194723 + AT_rich Low_complexity Low_complexity 1 28 0 2320 73 0 38 chr1 184470005 184470319 -58194034 - AluY SINE Alu -5 306 5 1351 177 48 4 chr1 184470556 184470851 -58193502 + L1PA16 LINE L1 5824 6157 -6 35 41 0 0 chr1 184471026 184471075 -58193278 + AT_rich Low_complexity Low_complexity 1 49 0 1810 181 75 75 chr1 184471283 184471677 -58192676 - MLT2B2 LTR ERVL -63 452 56 2348 61 0 14 chr1 184471677 184471973 -58192380 - AluY SINE Alu -17 294 3 1810 181 75 75 chr1 184471973 184472030 -58192323 - MLT2B2 LTR ERVL -458 57 1 4464 187 58 2 chr1 184472030 184472946 -58191407 + L1MC1 LINE L1 5367 6333 0 6888 185 9 14 chr1 184473039 184474433 -58189920 - L1PA13 LINE L1 -1970 4176 2789 5686 180 13 10 chr1 184474434 184476388 -58187965 + L1PA13 LINE L1 4179 6152 -11 290 274 12 0 chr1 184476663 184476747 -58187606 + (TA)n Simple_repeat Simple_repeat 2 86 0 322 251 0 0 chr1 184476753 184476825 -58187528 + MLT1J LTR MaLR 65 125 -321 1486 73 49 0 chr1 184477861 184478066 -58186287 + L1PA5 LINE L1 5939 6153 -1 22 35 0 0 chr1 184479778 184479807 -58184546 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 184479996 184480024 -58184329 + AT_rich Low_complexity Low_complexity 1 28 0 1935 176 31 0 chr1 184480460 184480813 -58183540 + THE1B LTR MaLR 1 364 0 834 250 6 10 chr1 184481118 184481370 -58182983 - L1MB7 LINE L1 -339 5845 5594 2098 149 91 13 chr1 184481791 184482188 -58182165 + MSTA LTR MaLR 1 428 0 305 350 0 44 chr1 184482234 184482371 -58181982 - MIR SINE MIR -131 131 1 1888 216 37 55 chr1 184482415 184482886 -58181467 + MLT1D LTR MaLR 1 464 -41 2347 74 0 13 chr1 184482886 184483198 -58181155 - AluY SINE Alu -3 308 1 1888 216 37 55 chr1 184483198 184483240 -58181113 + MLT1D LTR MaLR 464 505 0 28 0 0 0 chr1 184484841 184484869 -58179484 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr1 184485060 184485081 -58179272 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 543 342 47 17 chr1 184485490 184485788 -58178565 + LTR16A LTR ERVL 36 342 -108 1115 327 20 41 chr1 184485813 184486354 -58177999 + HERV16 LTR ERVL 39 568 -4428 1445 302 53 9 chr1 184486382 184486849 -58177504 + HERV16 LTR ERVL 748 1235 -3761 1032 344 84 16 chr1 184487596 184487690 -58176663 - L2 LINE L2 -423 2891 2805 2031 71 18 4 chr1 184487690 184487971 -58176382 - L1PA7 LINE L1 -2 6152 5868 1032 344 84 16 chr1 184487971 184488521 -58175832 - L2 LINE L2 -509 2805 2203 2391 183 14 22 chr1 184488586 184488790 -58175563 - L1MA4 LINE L1 -7 6293 6089 1774 141 28 0 chr1 184488790 184489073 -58175280 - AluSx SINE Alu -14 298 8 2391 183 14 22 chr1 184489073 184489377 -58174976 - L1MA4 LINE L1 -211 6089 5789 252 85 0 0 chr1 184489393 184489440 -58174913 + LTR66 LTR ERVL 394 440 -170 309 179 18 0 chr1 184489441 184489497 -58174856 - L1MA4 LINE L1 -627 5673 5617 * 3891 194 41 16 chr1 184489494 184490402 -58173951 + L1 LINE L1 4405 5334 -812 2122 114 7 0 chr1 184490844 184491141 -58173212 - AluSc SINE Alu -10 299 1 181 213 106 0 chr1 184491171 184491218 -58173135 - L2 LINE L2 -1 3312 3261 2091 110 13 7 chr1 184491378 184491679 -58172674 + AluSx SINE Alu 1 303 -9 512 293 17 22 chr1 184491679 184491860 -58172493 + MLT1F1 LTR MaLR 382 561 -6 185 429 0 9 chr1 184492589 184492701 -58171652 - MIR SINE MIR -108 154 44 3244 177 5 2 chr1 184493517 184494106 -58170247 - L1P LINE L1 -1016 5130 4540 243 0 0 0 chr1 184494122 184494149 -58170204 + (CA)n Simple_repeat Simple_repeat 2 28 0 208 288 17 0 chr1 184494207 184494266 -58170087 + L2 LINE L2 3213 3272 0 30 27 0 0 chr1 184495025 184495062 -58169291 + AT_rich Low_complexity Low_complexity 1 37 0 569 296 15 5 chr1 184495340 184495546 -58168807 + MER3 DNA MER1_type 1 208 -1 2781 139 7 0 chr1 184496247 184496678 -58167675 + MER57B LTR ERV1 1 434 0 639 121 20 0 chr1 184496774 184496873 -58167480 - L1P4 LINE L1 -552 5609 5509 2120 126 17 0 chr1 184497579 184498059 -58166294 + L1P4 LINE L1 5086 5571 -590 4484 180 51 0 chr1 184498190 184499156 -58165197 - L1PA16 LINE L1 -34 6132 5116 974 284 67 42 chr1 184499538 184499985 -58164368 - MLT1C LTR MaLR -8 459 2 22 70 0 0 chr1 184500270 184500313 -58164040 + AT_rich Low_complexity Low_complexity 1 43 0 2420 80 0 6 chr1 184500356 184500667 -58163686 - AluY SINE Alu 0 311 3 684 310 254 30 chr1 184500689 184501292 -58163061 - L2 LINE L2 -465 2849 2112 1771 128 194 6 chr1 184501815 184502175 -58162178 + MSTA LTR MaLR 1 428 0 210 363 148 0 chr1 184502176 184502311 -58162042 - L2 LINE L2 -1 3271 3117 34 55 0 0 chr1 184505039 184505094 -58159259 + AT_rich Low_complexity Low_complexity 1 55 0 349 291 99 14 chr1 184505536 184505677 -58158676 - MER74B LTR ERVL -349 273 121 976 214 28 63 chr1 184506662 184506979 -58157374 - L1MA6 LINE L1 -208 6092 5787 3021 114 11 13 chr1 184506979 184507433 -58156920 + MLT2A2 LTR ERVL 1 453 0 18313 98 7 1 chr1 184507437 184509943 -58154410 + HERVL-A2 LTR ERVL 3 2523 -3131 5154 38 5 2 chr1 184510043 184510681 -58153672 - L1P LINE L1 -1616 4530 3891 7540 23 1 0 chr1 184510681 184511849 -58152504 + L1PA2 LINE L1 4996 6164 0 5697 162 79 2 chr1 184511851 184512427 -58151926 - Tigger3b DNA MER2_type -1832 1196 666 360 0 0 0 chr1 184512427 184512467 -58151886 + (TA)n Simple_repeat Simple_repeat 1 40 0 5697 162 79 2 chr1 184512467 184512999 -58151354 - Tigger3b DNA MER2_type -2362 666 2 24 32 0 0 chr1 184514090 184514121 -58150232 + AT_rich Low_complexity Low_complexity 1 31 0 225 304 0 25 chr1 184515257 184515336 -58149017 + L2 LINE L2 3236 3312 -1 1698 163 129 13 chr1 184515670 184516050 -58148303 - MSTA LTR MaLR -4 424 1 23 33 0 0 chr1 184516997 184517027 -58147326 + AT_rich Low_complexity Low_complexity 1 30 0 1982 74 74 3 chr1 184517277 184517561 -58146792 + AluY SINE Alu 1 304 -7 375 284 39 16 chr1 184517721 184517848 -58146505 - MIR SINE MIR -39 223 94 6107 44 1 1 chr1 184518298 184519051 -58145302 - L1PA4 LINE L1 -1 6154 5402 8697 37 0 5 chr1 184519051 184520882 -58143471 + L1PA5 LINE L1 4310 6141 -13 23 0 0 0 chr1 184522167 184522190 -58142163 + AT_rich Low_complexity Low_complexity 1 23 0 1863 187 56 27 chr1 184522403 184522935 -58141418 + MLT2A2 LTR ERVL 1 554 0 21 0 0 0 chr1 184523198 184523219 -58141134 + AT_rich Low_complexity Low_complexity 1 21 0 4554 193 35 13 chr1 184523435 184524536 -58139817 - L1MA7 LINE L1 0 6291 5175 1706 168 32 35 chr1 184524611 184524786 -58139567 + MER2 DNA MER2_type 1 176 -168 2254 95 0 0 chr1 184524786 184525082 -58139271 + AluSg SINE Alu 1 296 -14 1706 168 32 35 chr1 184525082 184525251 -58139102 + MER2 DNA MER2_type 176 344 0 180 111 0 0 chr1 184525701 184525728 -58138625 + (CA)n Simple_repeat Simple_repeat 2 28 0 1193 144 138 104 chr1 184527379 184527706 -58136647 + MER44D DNA MER2_type 1 608 -1 248 193 18 53 chr1 184528904 184529018 -58135335 + L1MEd LINE L1 967 1076 -5043 28 91 0 0 chr1 184629196 184629273 -58035080 + AT_rich Low_complexity Low_complexity 1 77 0 367 313 140 33 chr1 184629522 184629736 -58034617 + MIR SINE MIR 12 248 -14 196 323 132 36 chr1 184629944 184630111 -58034242 - L3 LINE CR1 -9 1568 1386 299 198 28 45 chr1 184630184 184630361 -58033992 + (TATAA)n Simple_repeat Simple_repeat 3 176 0 21 36 0 0 chr1 184631587 184631615 -58032738 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 184631810 184631832 -58032521 + AT_rich Low_complexity Low_complexity 1 22 0 236 245 166 33 chr1 184632234 184632385 -58031968 - L1MC/D LINE L1 -1907 5901 5731 560 81 0 0 chr1 184633202 184633276 -58031077 + AluSg/x SINE Alu 212 285 -27 912 36 0 0 chr1 184633276 184633388 -58030965 + (CATAA)n Simple_repeat Simple_repeat 2 113 0 189 0 0 0 chr1 184633429 184633450 -58030903 + (A)n Simple_repeat Simple_repeat 1 21 0 427 200 9 17 chr1 184633478 184633593 -58030760 + CT-rich Low_complexity Low_complexity 5 118 0 2436 68 0 0 chr1 184634144 184634439 -58029914 - AluY SINE Alu -16 295 1 302 255 174 27 chr1 184634606 184634755 -58029598 - HAL1b LINE L1 -846 502 332 25 0 0 0 chr1 184635524 184635549 -58028804 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr1 184637598 184637635 -58026718 + AT_rich Low_complexity Low_complexity 1 37 0 2335 79 0 7 chr1 184638202 184638506 -58025847 + AluY SINE Alu 1 302 -9 24 0 0 0 chr1 184639351 184639375 -58024978 + AT_rich Low_complexity Low_complexity 1 24 0 493 299 6 6 chr1 184640005 184640179 -58024174 - L1MEc LINE L1 -3628 2587 2414 995 268 130 6 chr1 184640181 184640528 -58023825 - MLT1B LTR MaLR 0 390 1 1426 243 124 41 chr1 184640528 184641528 -58022825 - L1MEc LINE L1 -3843 2372 1399 316 348 117 43 chr1 184642190 184642541 -58021812 + L1ME4a LINE L1 5477 5853 -268 284 98 0 0 chr1 184643166 184643207 -58021146 + U5 snRNA snRNA 9 49 -67 28 29 0 0 chr1 184643338 184643373 -58020980 + AT_rich Low_complexity Low_complexity 1 35 0 2145 119 0 10 chr1 184643520 184643832 -58020521 - AluSc SINE Alu 0 309 1 1765 179 112 17 chr1 184643893 184644291 -58020062 + MSTB1 LTR MaLR 2 432 0 22 0 0 0 chr1 184647290 184647312 -58017041 + AT_rich Low_complexity Low_complexity 1 22 0 7647 28 2 2 chr1 184648481 184650033 -58014320 - L1PA3 LINE L1 -1 6154 4603 17169 31 3 0 chr1 184650033 184652120 -58012233 + L1PA3 LINE L1 2540 4633 -1513 347 255 197 43 chr1 184652271 184652304 -58012049 + MIR SINE MIR 20 47 -215 2147 65 48 0 chr1 184652304 184652595 -58011758 - AluY SINE Alu -6 305 1 347 255 197 43 chr1 184652595 184652769 -58011584 + MIR SINE MIR 47 259 -3 21 36 0 0 chr1 184652826 184652854 -58011499 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 184654016 184654037 -58010316 + AT_rich Low_complexity Low_complexity 1 21 0 2541 36 0 0 chr1 184654061 184654368 -58009985 - L1PA5 LINE L1 0 6154 5848 265 277 181 26 chr1 184655816 184655971 -58008382 + MIR SINE MIR 53 231 -31 1275 205 0 8 chr1 184656008 184656266 -58008087 - AluJb SINE Alu -14 298 43 300 221 15 15 chr1 184656414 184656482 -58007871 - AluJ/FLAM SINE Alu -233 69 2 257 133 22 0 chr1 184657332 184657377 -58006976 - MADE1 DNA Mariner 0 80 35 26 0 0 0 chr1 184657552 184657578 -58006775 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr1 184657926 184657964 -58006389 + AT_rich Low_complexity Low_complexity 1 38 0 205 171 0 0 chr1 184659182 184659217 -58005136 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chr1 184662613 184662654 -58001699 + AT_rich Low_complexity Low_complexity 1 41 0 591 186 9 0 chr1 184662748 184662861 -58001492 + MER67D LTR ERV1 25 138 -376 504 171 117 0 chr1 184662858 184662969 -58001384 - Tigger5 DNA MER2_type -115 2208 2085 * 342 233 29 10 chr1 184663100 184663203 -58001150 - L1ME3A LINE L1 -289 5881 5777 2173 186 26 9 chr1 184663661 184664080 -58000273 + MSTB LTR MaLR 1 426 0 383 369 44 28 chr1 184665675 184665927 -57998426 - MIR SINE MIR 0 262 7 1023 179 31 0 chr1 184667425 184667620 -57996733 - L1MA7 LINE L1 -267 6024 5824 1480 103 20 0 chr1 184667624 184667828 -57996525 - AluSg/x SINE Alu -6 306 99 279 54 0 0 chr1 184667828 184667865 -57996488 + (TG)n Simple_repeat Simple_repeat 2 38 0 475 150 80 9 chr1 184667879 184667992 -57996361 + L1MA7 LINE L1 6159 6279 -12 618 229 22 73 chr1 184669509 184669688 -57994665 + LTR16B LTR ERVL 163 332 -132 234 0 0 0 chr1 184669771 184669797 -57994556 + (A)n Simple_repeat Simple_repeat 1 26 0 772 284 84 16 chr1 184669889 184670269 -57994084 + HERV16 LTR ERVL 3440 3845 -1151 517 356 62 35 chr1 184670513 184670996 -57993357 + HERV16 LTR ERVL 4419 4914 -740 348 297 23 34 chr1 184671050 184671225 -57993128 + HERV16 LTR ERVL 4523 4695 -301 979 309 47 16 chr1 184672724 184673170 -57991183 + LTR16B LTR ERVL 5 464 0 213 308 44 11 chr1 184674141 184674232 -57990121 + MIR SINE MIR 113 206 -56 614 209 57 73 chr1 184674499 184674676 -57989677 + MER5A DNA MER1_type 16 189 0 28 29 0 0 chr1 184675096 184675131 -57989222 + AT_rich Low_complexity Low_complexity 1 35 0 355 163 31 0 chr1 184676422 184676520 -57987833 + GA-rich Low_complexity Low_complexity 1 101 0 352 322 16 0 chr1 184676525 184676646 -57987707 + CT-rich Low_complexity Low_complexity 2 124 0 24 32 0 0 chr1 184677348 184677379 -57986974 + AT_rich Low_complexity Low_complexity 1 31 0 649 242 57 44 chr1 184677471 184677766 -57986587 - MER61D LTR ERV1 0 504 230 31 44 0 0 chr1 184678456 184678501 -57985852 + AT_rich Low_complexity Low_complexity 1 45 0 22 70 0 0 chr1 184678562 184678605 -57985748 + AT_rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chr1 184679578 184679622 -57984731 + AT_rich Low_complexity Low_complexity 1 44 0 1638 181 0 33 chr1 184680187 184680490 -57983863 + AluJo SINE Alu 5 297 -15 2051 123 0 7 chr1 184680566 184680879 -57983474 + AluSp SINE Alu 1 311 0 250 294 26 115 chr1 184680993 184681262 -57983091 - L2 LINE L2 -2 3311 3067 1154 316 39 30 chr1 184681323 184681788 -57982565 - L2 LINE L2 -417 2897 2429 277 284 173 5 chr1 184682851 184683048 -57981305 - Tigger8 DNA MER2_type -379 287 58 2336 82 0 0 chr1 184683932 184684236 -57980117 - AluY SINE Alu -7 304 1 33 25 0 0 chr1 184684658 184684698 -57979655 + AT_rich Low_complexity Low_complexity 1 40 0 243 337 65 0 chr1 184684725 184684817 -57979536 - L2 LINE L2 -1 3271 3174 185 390 42 42 chr1 184685677 184685795 -57978558 - L2 LINE L2 -16 3256 3139 211 290 0 32 chr1 184686380 184686473 -57977880 - L2 LINE L2 -1342 1972 1883 294 29 0 0 chr1 184687159 184687194 -57977159 + (TG)n Simple_repeat Simple_repeat 1 35 0 232 164 0 0 chr1 184687261 184687316 -57977037 + L1MC4 LINE L1 6649 6703 -1339 306 288 86 68 chr1 184687495 184688075 -57976278 - L1MDa LINE L1 -4183 2213 1572 2127 120 0 3 chr1 184688075 184688376 -57975977 - AluSg SINE Alu -10 300 1 306 288 86 68 chr1 184688376 184688430 -57975923 - L1MDa LINE L1 -4824 1572 1520 761 225 41 148 chr1 184688513 184688926 -57975427 + MLT1A2 LTR MaLR 1 369 -5 1625 150 7 4 chr1 184688955 184689235 -57975118 - L1PA15 LINE L1 -2 6163 5883 3501 169 22 16 chr1 184689236 184690431 -57973922 - L1PA15 LINE L1 -385 5780 4580 216 90 39 39 chr1 184690502 184690580 -57973773 + (TA)n Simple_repeat Simple_repeat 1 78 0 249 323 16 8 chr1 184690646 184690770 -57973583 - L1MDa LINE L1 -5043 1353 1229 2346 57 40 0 chr1 184691167 184691466 -57972887 - AluY SINE Alu 0 311 1 200 262 0 0 chr1 184692945 184692987 -57971366 - MIR SINE MIR -156 106 65 638 61 0 0 chr1 184694436 184694518 -57969835 - L1PA2 LINE L1 -1162 4984 4903 * 7662 18 0 1 chr1 184694508 184695701 -57968652 + L1PA2 LINE L1 4995 6186 0 22 56 0 0 chr1 184696852 184696888 -57967465 + AT_rich Low_complexity Low_complexity 1 36 0 512 289 146 37 chr1 184697200 184697850 -57966503 - HAL1b LINE L1 -262 1086 366 23 54 0 0 chr1 184698004 184698041 -57966312 + AT_rich Low_complexity Low_complexity 1 37 0 258 370 12 0 chr1 184698762 184698843 -57965510 - MIR3 SINE MIR -12 196 115 2791 154 28 0 chr1 184699628 184699981 -57964372 - L1PB4 LINE L1 -2 6154 5782 378 0 0 0 chr1 184699981 184700023 -57964330 + (TG)n Simple_repeat Simple_repeat 2 43 0 2791 154 28 0 chr1 184700023 184700163 -57964190 - L1PB4 LINE L1 -374 5782 5647 192 377 39 0 chr1 184701408 184701485 -57962868 + L2 LINE L2 3193 3272 0 188 67 33 0 chr1 184701502 184701532 -57962821 + (ATTAG)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr1 184702077 184702100 -57962253 + AT_rich Low_complexity Low_complexity 1 23 0 2872 166 22 25 chr1 184702301 184702379 -57961974 - L1PA15 LINE L1 -2 6163 6086 2521 104 6 3 chr1 184702379 184702733 -57961620 - THE1A LTR MaLR 0 355 1 10990 111 4 1 chr1 184702737 184704309 -57960044 - THE1A-int LTR MaLR -4 1576 1 2281 120 8 14 chr1 184704309 184704666 -57959687 - THE1A LTR MaLR 0 355 1 2872 166 22 25 chr1 184704666 184705136 -57959217 - L1PA15 LINE L1 -80 6085 5611 200 100 25 0 chr1 184705231 184705271 -57959082 + (TA)n Simple_repeat Simple_repeat 1 41 0 534 279 37 21 chr1 184706575 184706765 -57957588 - MER3 DNA MER1_type -6 203 11 12920 26 1 0 chr1 184706951 184709256 -57955097 - L1PA3 LINE L1 0 6155 3851 306 315 72 36 chr1 184709296 184709547 -57954806 - L1 LINE L1 -1870 4276 4017 374 320 53 65 chr1 184710046 184710368 -57953985 - HAL1 LINE L1 -1128 1379 1062 2678 22 0 0 chr1 184710392 184710706 -57953647 + L1PA2 LINE L1 5842 6155 0 2272 178 38 62 chr1 184710731 184711264 -57953089 - MLT2B1 LTR ERVL 0 520 1 25 83 0 0 chr1 184712216 184712276 -57952077 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr1 184712542 184712564 -57951789 + AT_rich Low_complexity Low_complexity 1 22 0 1286 165 23 8 chr1 184713572 184713720 -57950633 - L1MA9 LINE L1 -4 6308 6153 243 88 0 0 chr1 184713720 184713754 -57950599 + (TG)n Simple_repeat Simple_repeat 1 34 0 1286 165 23 8 chr1 184713754 184713871 -57950482 - L1MA9 LINE L1 -159 6153 6039 2890 209 70 65 chr1 184713905 184714705 -57949648 - MER21B LTR ERV1 -48 815 12 2162 173 14 40 chr1 184714719 184714816 -57949537 - L1MA7 LINE L1 -245 6046 5950 462 288 62 72 chr1 184714816 184714969 -57949384 - L1ME3A LINE L1 -224 5946 5793 333 0 0 0 chr1 184714969 184715006 -57949347 + (TG)n Simple_repeat Simple_repeat 2 38 0 462 288 62 72 chr1 184715006 184715238 -57949115 - L1ME3A LINE L1 -377 5793 5565 9406 216 31 23 chr1 184715944 184716997 -57947356 - L1MA7 LINE L1 -684 5628 4585 2235 171 3 3 chr1 184716997 184717372 -57946981 + THE1C LTR MaLR 1 375 0 9406 216 31 23 chr1 184717372 184717794 -57946559 - L1MA7 LINE L1 -1727 4585 4168 207 0 0 0 chr1 184717794 184717817 -57946536 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 9406 216 31 23 chr1 184717817 184718366 -57945987 - L1MA7 LINE L1 -2144 4168 3625 2882 115 27 18 chr1 184718366 184718811 -57945542 - MLT2A2 LTR ERVL -4 449 1 9406 216 31 23 chr1 184718811 184718945 -57945408 - L1MA7 LINE L1 -2687 3625 3494 2266 75 0 0 chr1 184718945 184719276 -57945077 - AluY SINE Alu 0 331 1 9406 216 31 23 chr1 184719276 184719950 -57944403 - L1MA7 LINE L1 -2818 3494 2771 467 200 33 11 chr1 184719962 184720052 -57944301 + MER70A-int LTR ERVL 3551 3642 -1381 * 4021 176 15 0 chr1 184720046 184720715 -57943638 + MER70A-int LTR ERVL 4338 5016 -7 2028 189 29 68 chr1 184720735 184721190 -57943163 + MER70A LTR ERVL 36 472 0 334 369 46 8 chr1 184721201 184721442 -57942911 - L1M2a LINE L1 -6912 256 7 1148 175 10 0 chr1 184722242 184722442 -57941911 + AluSx SINE Alu 1 202 -110 693 135 29 0 chr1 184722443 184722547 -57941806 + AluSg/x SINE Alu 69 175 -137 1374 257 40 34 chr1 184722717 184723215 -57941138 - MLT1D LTR MaLR 0 505 5 258 214 247 0 chr1 184723374 184723463 -57940890 + MER69 DNA AcHobo 1 111 -2415 307 317 165 16 chr1 184724040 184724289 -57940064 + L1MC4a LINE L1 5973 6258 -1550 2339 58 20 0 chr1 184724524 184724818 -57939535 + AluY SINE Alu 1 300 -11 495 288 136 54 chr1 184724881 184725308 -57939045 + L1MC5 LINE L1 6611 7072 -889 502 316 92 54 chr1 184725520 184726163 -57938190 + L1MC5 LINE L1 7259 7925 -36 283 304 21 36 chr1 184726169 184726370 -57937983 + L1MDa LINE L1 1750 2047 -854 23 33 0 0 chr1 184726421 184726451 -57937902 + AT_rich Low_complexity Low_complexity 1 30 0 269 155 17 0 chr1 184727311 184727369 -57936984 + (TA)n Simple_repeat Simple_repeat 1 59 0 22 35 0 0 chr1 184727369 184727398 -57936955 + AT_rich Low_complexity Low_complexity 1 29 0 461 149 40 7 chr1 184727414 184727562 -57936791 + (TA)n Simple_repeat Simple_repeat 2 154 0 215 178 22 0 chr1 184727999 184728044 -57936309 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 257 390 49 0 chr1 184728126 184728249 -57936104 + MIR SINE MIR 4 132 -130 302 218 80 85 chr1 184728269 184728457 -57935896 + MER106A DNA MER1_type 49 235 -1 22 56 0 0 chr1 184728560 184728596 -57935757 + AT_rich Low_complexity Low_complexity 1 36 0 1002 186 60 15 chr1 184728690 184728889 -57935464 - MER2 DNA MER2_type -135 210 3 440 276 80 9 chr1 184728908 184729100 -57935253 - MLT1C LTR MaLR 0 467 278 26 64 0 0 chr1 184729185 184729232 -57935121 + AT_rich Low_complexity Low_complexity 1 47 0 189 0 0 0 chr1 184729234 184729255 -57935098 + (TG)n Simple_repeat Simple_repeat 2 22 0 4825 169 62 11 chr1 184729258 184730726 -57933627 - L1MA8 LINE L1 -27 6264 4716 311 238 111 81 chr1 184730730 184730902 -57933451 - MLT1C LTR MaLR -285 182 6 29 60 0 0 chr1 184731936 184731986 -57932367 + AT_rich Low_complexity Low_complexity 1 50 0 207 305 76 68 chr1 184732124 184732242 -57932111 - L2 LINE L2 -4 3309 3191 22 0 0 0 chr1 184732502 184732524 -57931829 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 184733069 184733101 -57931252 + AT_rich Low_complexity Low_complexity 1 32 0 395 271 93 103 chr1 184733816 184734107 -57930246 + MLT1I LTR MaLR 120 407 -2 272 267 128 0 chr1 184734177 184734263 -57930090 + MIR SINE MIR 57 153 -109 22 35 0 0 chr1 184734300 184734329 -57930024 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 8 0 chr1 184734708 184734765 -57929588 + AT_rich Low_complexity Low_complexity 1 22 0 249 151 0 0 chr1 184734825 184734878 -57929475 + CT-rich Low_complexity Low_complexity 2 54 0 338 102 34 0 chr1 184734879 184734938 -57929415 + (TATG)n Simple_repeat Simple_repeat 2 62 0 183 129 0 0 chr1 184734938 184734969 -57929384 + (CA)n Simple_repeat Simple_repeat 2 32 0 1878 145 19 3 chr1 184735370 184735681 -57928672 + Tigger2a DNA MER2_type 1 316 -118 476 216 0 54 chr1 184735780 184735891 -57928462 + Tigger2a DNA MER2_type 330 434 0 22 80 0 0 chr1 184736178 184736228 -57928125 + AT_rich Low_complexity Low_complexity 1 50 0 377 158 0 49 chr1 184736289 184736371 -57927982 + L1ME LINE L1 5423 5500 -664 181 218 113 99 chr1 184736495 184736606 -57927747 + MER5C DNA MER1_type 180 295 -29 4801 145 170 29 chr1 184736606 184737726 -57926627 + MER52C LTR ERV1 1 1278 0 181 218 113 99 chr1 184737726 184737756 -57926597 + MER5C DNA MER1_type 295 323 -1 1209 138 10 0 chr1 184738758 184738961 -57925392 + L1MA5A LINE L1 6093 6297 0 1683 133 53 7 chr1 184739651 184739952 -57924401 - L1PA13 LINE L1 -1 6162 5848 23 54 0 0 chr1 184741837 184741874 -57922479 + AT_rich Low_complexity Low_complexity 1 37 0 26 74 0 0 chr1 184742546 184742600 -57921753 + AT_rich Low_complexity Low_complexity 1 54 0 28 29 0 0 chr1 184742655 184742690 -57921663 + AT_rich Low_complexity Low_complexity 1 35 0 338 305 110 0 chr1 184742691 184742809 -57921544 - MIR SINE MIR -131 131 1 5967 197 40 19 chr1 184743431 184747193 -57917160 - L1MA4 LINE L1 -278 7441 3468 2449 61 3 0 chr1 184747193 184747503 -57916850 - AluY SINE Alu 0 311 1 5967 197 40 19 chr1 184747503 184747631 -57916722 - L1MA4 LINE L1 -4251 3468 3344 392 144 9 27 chr1 184747703 184747814 -57916539 + (TA)n Simple_repeat Simple_repeat 2 110 0 3170 239 17 21 chr1 184747845 184748778 -57915575 - L1MA4 LINE L1 -4337 3228 2300 252 0 0 0 chr1 184748899 184748927 -57915426 + (TG)n Simple_repeat Simple_repeat 1 28 0 2444 67 0 13 chr1 184749170 184749484 -57914869 + AluY SINE Alu 1 310 -1 240 398 48 0 chr1 184749568 184749671 -57914682 - L2 LINE L2 -22 3291 3184 788 247 148 25 chr1 184750231 184750584 -57913769 - MSTC LTR MaLR -2 426 1 375 355 60 6 chr1 184750603 184750769 -57913584 + MIR SINE MIR 17 191 -71 271 156 0 0 chr1 184750921 184750966 -57913387 - MADE1 DNA Mariner -35 45 1 787 327 136 30 chr1 184752465 184752679 -57911674 + L2 LINE L2 2371 2561 -752 3628 106 65 24 chr1 184752679 184753265 -57911088 + MER4B LTR ERV1 1 610 0 787 327 136 30 chr1 184753265 184753907 -57910446 + L2 LINE L2 2561 3313 0 22 0 0 0 chr1 184753907 184753929 -57910424 + AT_rich Low_complexity Low_complexity 1 22 0 307 352 39 0 chr1 184754727 184754855 -57909498 + MIR SINE MIR 46 178 -84 1020 221 186 24 chr1 184754863 184754943 -57909410 - Charlie1 DNA MER1_type -1 2760 2694 468 0 0 0 chr1 184754943 184754995 -57909358 + (TA)n Simple_repeat Simple_repeat 2 53 0 1020 221 186 24 chr1 184754995 184755334 -57909019 - Charlie1 DNA MER1_type -67 2694 2273 1823 146 0 29 chr1 184755338 184755653 -57908700 - L1PA15 LINE L1 -1 6164 5859 3756 141 2 8 chr1 184755660 184756250 -57908103 - L1PA15 LINE L1 -255 5910 5325 2631 253 40 21 chr1 184756269 184757286 -57907067 + L1ME1 LINE L1 5127 6159 -7 2166 225 66 64 chr1 184757289 184757997 -57906356 - Charlie1 DNA MER1_type -1108 1653 944 3497 124 15 106 chr1 184758007 184758365 -57905988 - L1PB2 LINE L1 -1 6150 5894 264 30 0 0 chr1 184758365 184758398 -57905955 + (TG)n Simple_repeat Simple_repeat 2 34 0 3497 124 15 106 chr1 184758398 184758786 -57905567 - L1PB2 LINE L1 -257 5894 5472 64 0 0 0 chr1 184758789 184758853 -57905500 + AT_rich Low_complexity Low_complexity 1 64 0 3129 184 9 32 chr1 184758853 184758964 -57905389 - L1PB2 LINE L1 -686 5465 5353 2025 114 4 7 chr1 184758964 184759278 -57905075 - AluSc SINE Alu 0 313 1 3129 184 9 32 chr1 184759278 184760046 -57904307 - L1PB2 LINE L1 -798 5353 4592 3458 179 7 19 chr1 184760046 184760744 -57903609 + L1PB2 LINE L1 3912 4601 -1545 1577 242 163 54 chr1 184760744 184761608 -57902745 - Charlie1 DNA MER1_type -1801 960 3 407 357 0 0 chr1 184761783 184761909 -57902444 - LTR16A LTR ERVL -206 244 119 306 185 19 0 chr1 184762093 184762147 -57902206 - L1PB2 LINE L1 -1512 4634 4580 216 90 39 39 chr1 184762218 184762296 -57902057 + (TA)n Simple_repeat Simple_repeat 1 78 0 249 323 16 8 chr1 184762362 184762486 -57901867 - L1MEc LINE L1 -5043 1353 1229 2036 104 40 0 chr1 184762879 184763178 -57901175 - AluY SINE Alu 0 311 1 186 43 0 0 chr1 184763701 184763724 -57900629 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 184764471 184764494 -57899859 + AT_rich Low_complexity Low_complexity 1 23 0 7086 101 11 22 chr1 184764502 184765585 -57898768 + MER11C LTR ERVK 1 1071 0 380 248 178 0 chr1 184765852 184765981 -57898372 - MLT1H1 LTR MaLR -234 321 170 553 255 85 19 chr1 184766051 184766301 -57898052 + MLT1G3 LTR MaLR 325 530 0 10603 39 2 9 chr1 184766715 184768771 -57895582 + L1PA4 LINE L1 4106 6154 -1 24 77 0 0 chr1 184769039 184769091 -57895262 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr1 184769506 184769527 -57894826 + AT_rich Low_complexity Low_complexity 1 21 0 423 248 101 0 chr1 184770416 184770545 -57893808 - L1ME1 LINE L1 -4 6162 6021 21 0 0 0 chr1 184770862 184770883 -57893470 + AT_rich Low_complexity Low_complexity 1 21 0 236 233 0 17 chr1 184771982 184772042 -57892311 + MLT1H LTR MaLR 101 159 -390 455 293 50 37 chr1 184772127 184772390 -57891963 + MLT1H LTR MaLR 245 528 -21 1186 143 54 46 chr1 184772860 184773140 -57891213 - L1MA10 LINE L1 -1 6333 6052 1180 245 11 5 chr1 184773595 184774134 -57890219 - MLT1E1 LTR MaLR -28 626 1 1581 163 67 28 chr1 184774208 184774569 -57889784 - THE1C LTR MaLR 0 375 1 228 311 78 0 chr1 184774775 184774865 -57889488 + MLT1E LTR MaLR 38 134 -459 1240 280 49 35 chr1 184774892 184775161 -57889192 + L1MC4a LINE L1 6332 6596 -1212 2457 136 9 12 chr1 184775161 184775589 -57888764 + L1MA4A LINE L1 5870 6296 -7 1240 280 49 35 chr1 184775589 184775854 -57888499 + L1MC4a LINE L1 6596 6873 -935 1311 170 7 42 chr1 184775858 184776146 -57888207 + L1MA3 LINE L1 6028 6305 0 22 35 0 0 chr1 184776234 184776263 -57888090 + AT_rich Low_complexity Low_complexity 1 29 0 476 323 82 5 chr1 184776505 184776700 -57887653 - MIR SINE MIR -47 215 6 22 35 0 0 chr1 184777320 184777349 -57887004 + AT_rich Low_complexity Low_complexity 1 29 0 405 0 0 0 chr1 184777353 184777398 -57886955 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 33 0 0 chr1 184777705 184777735 -57886618 + AT_rich Low_complexity Low_complexity 1 30 0 23 86 0 0 chr1 184777819 184777877 -57886476 + AT_rich Low_complexity Low_complexity 1 58 0 2012 92 0 3 chr1 184778133 184778441 -57885912 + AluY SINE Alu 1 307 0 462 64 0 39 chr1 184778442 184778520 -57885833 + L1PA7 LINE L1 6080 6154 0 229 336 26 35 chr1 184780187 184780300 -57884053 - L2 LINE L2 -13 3300 3189 1184 302 119 52 chr1 184780452 184781240 -57883113 + L2 LINE L2 2060 2900 -414 246 238 0 50 chr1 184782459 184782539 -57881814 + GA-rich Low_complexity Low_complexity 4 79 0 507 349 100 14 chr1 184783723 184784273 -57880080 + HERV16 LTR ERVL 1277 1940 -3056 652 242 76 32 chr1 184784451 184784823 -57879530 - LTR40b LTR ERVL 0 462 4 718 261 60 28 chr1 184784826 184785044 -57879309 - HERVL40 LTR ERVL 0 5530 5306 430 214 34 17 chr1 184785040 184785157 -57879196 - HERVL68 LTR ERVL -135 2902 2784 * 350 333 6 13 chr1 184785046 184785205 -57879148 - MER89-int LTR ERV1 -316 6485 6328 * 290 179 12 60 chr1 184785344 184785428 -57878925 - HERVL68 LTR ERVL -329 2708 2629 27 0 0 0 chr1 184786242 184786269 -57878084 + AT_rich Low_complexity Low_complexity 1 27 0 1103 248 60 61 chr1 184786379 184786898 -57877455 - L1ME1 LINE L1 -66 6096 5569 253 242 364 0 chr1 184786926 184787025 -57877328 - LTR28 LTR ERV1 0 1755 1621 807 235 137 107 chr1 184787048 184787830 -57876523 - LTR28 LTR ERV1 -285 1470 3 343 283 62 79 chr1 184787830 184788198 -57876155 - L1MEc LINE L1 -4458 1938 1577 1864 204 24 3 chr1 184788349 184788726 -57875627 + MLT1B LTR MaLR 4 388 -2 445 333 20 10 chr1 184788863 184789039 -57875314 + L1MDb LINE L1 548 790 -5753 2148 234 19 8 chr1 184789095 184789694 -57874659 + L1MDb LINE L1 641 1314 -5229 1796 191 58 9 chr1 184789690 184790120 -57874233 - L1 LINE L1 -1693 4453 4003 * 808 287 138 4 chr1 184790124 184790601 -57873752 + L1MDb LINE L1 1932 2472 -4068 728 254 11 0 chr1 184790605 184790782 -57873571 - HERVL68 LTR ERVL -2808 2956 2778 28 0 0 0 chr1 184791273 184791301 -57873052 + AT_rich Low_complexity Low_complexity 1 28 0 227 289 62 28 chr1 184791668 184791879 -57872474 - L1MC/D LINE L1 -2515 5549 5332 321 302 69 40 chr1 184791938 184792196 -57872157 - L1MC/D LINE L1 -953 5262 5003 355 390 29 36 chr1 184792324 184792601 -57871752 + L1MDa LINE L1 57 331 -6209 253 337 96 11 chr1 184794565 184794752 -57869601 - L1MC/D LINE L1 -6094 302 100 24 0 0 0 chr1 184795655 184795679 -57868674 + AT_rich Low_complexity Low_complexity 1 24 0 4441 200 37 25 chr1 184796735 184797198 -57867155 + L1PB4 LINE L1 4128 4584 -1572 1420 214 9 47 chr1 184797198 184797520 -57866833 + AluJb SINE Alu 2 311 -1 4441 200 37 25 chr1 184797520 184799147 -57865206 + L1PB4 LINE L1 4584 6155 -1 628 266 59 6 chr1 184799168 184799337 -57865016 + MER5A DNA MER1_type 12 189 0 1627 179 54 43 chr1 184800081 184800432 -57863921 - MLT1A1 LTR MaLR -7 358 4 2403 94 14 0 chr1 184801386 184801736 -57862617 - THE1A LTR MaLR 0 355 1 278 366 20 0 chr1 184801815 184801916 -57862437 + MIR SINE MIR 12 114 -148 24 0 0 0 chr1 184801938 184801962 -57862391 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr1 184801999 184802054 -57862299 + AT_rich Low_complexity Low_complexity 1 55 0 229 416 8 0 chr1 184802827 184802952 -57861401 + MIR SINE MIR 15 140 -122 22 80 0 0 chr1 184803376 184803426 -57860927 + AT_rich Low_complexity Low_complexity 1 50 0 333 263 78 35 chr1 184806494 184806725 -57857628 + MLT1E2 LTR MaLR 27 251 -375 690 170 52 59 chr1 184806726 184806879 -57857474 + FRAM SINE Alu 22 173 -3 1382 193 26 20 chr1 184806884 184807189 -57857164 - MER90 LTR ERV1 -268 307 1 395 324 32 11 chr1 184807265 184807450 -57856903 + L2 LINE L2 2219 2407 -907 827 239 11 6 chr1 184807738 184807914 -57856439 + MER45A DNA AcHobo 1 177 -1 713 330 44 35 chr1 184807915 184808367 -57855986 + LTR16B LTR ERVL 8 463 -1 229 266 83 9 chr1 184808370 184808479 -57855874 + MIR SINE MIR 144 260 -2 223 364 41 16 chr1 184808557 184808678 -57855675 + L2 LINE L2 2632 2755 -559 2090 79 0 35 chr1 184809334 184809647 -57854706 - AluY SINE Alu 0 303 1 1917 214 2 12 chr1 184809658 184810079 -57854274 - L1MA10 LINE L1 -1908 4238 3822 * 2736 228 25 7 chr1 184810074 184810759 -57853594 + L1MA10 LINE L1 4238 4934 -1212 902 119 0 0 chr1 184810760 184810911 -57853442 - L1P3 LINE L1 -5080 1381 1231 6398 73 14 6 chr1 184810912 184812057 -57852296 + L1PA7 LINE L1 4998 6148 -6 385 189 14 0 chr1 184812060 184812134 -57852219 + L1MA10 LINE L1 4929 5003 -1143 1327 132 0 0 chr1 184812134 184812323 -57852030 + AluSg/x SINE Alu 85 273 -37 180 0 0 0 chr1 184812327 184812347 -57852006 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4751 170 35 39 chr1 184812349 184813374 -57850979 + L1MA10 LINE L1 5312 6332 -2 2102 117 13 0 chr1 184814802 184815109 -57849244 - AluSx SINE Alu -1 311 1 21 57 0 0 chr1 184815162 184815197 -57849156 + AT_rich Low_complexity Low_complexity 1 35 0 2370 103 0 0 chr1 184815507 184815819 -57848534 - AluSx SINE Alu 0 312 1 362 330 76 16 chr1 184816482 184816667 -57847686 - L2 LINE L2 -3 3310 3115 221 219 0 0 chr1 184817157 184817198 -57847155 - L2 LINE L2 -5 3308 3268 22 56 0 0 chr1 184818275 184818311 -57846042 + AT_rich Low_complexity Low_complexity 1 36 0 432 291 89 57 chr1 184819510 184819792 -57844561 + L2 LINE L2 3008 3298 -15 40 83 0 0 chr1 184819898 184819994 -57844359 + AT_rich Low_complexity Low_complexity 1 96 0 1710 273 47 34 chr1 184819994 184820812 -57843541 + L1ME3 LINE L1 5266 6095 -67 522 70 0 0 chr1 184821139 184821210 -57843143 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 24 0 0 0 chr1 184821314 184821338 -57843015 + AT_rich Low_complexity Low_complexity 1 24 0 432 205 43 43 chr1 184821370 184821487 -57842866 - MIR SINE MIR -39 223 107 1134 267 65 38 chr1 184821493 184821942 -57842411 - MLT1E3 LTR MaLR -9 615 155 288 306 70 27 chr1 184822302 184822560 -57841793 + L1MC/D LINE L1 5284 5552 -2490 22 0 0 0 chr1 184822652 184822674 -57841679 + AT_rich Low_complexity Low_complexity 1 22 0 2119 232 41 29 chr1 184823205 184824261 -57840092 - L1M2 LINE L1 -745 5546 4457 444 73 15 0 chr1 184824361 184824429 -57839924 - Alu SINE Alu -249 69 1 901 184 12 0 chr1 184824431 184824594 -57839759 + Tigger1 DNA MER2_type 2253 2417 -1 290 287 8 16 chr1 184824596 184824718 -57839635 + HAL1b LINE L1 711 831 -517 1640 188 36 7 chr1 184825141 184825449 -57838904 + Tigger7 DNA MER2_type 2 318 -2169 1061 156 5 16 chr1 184825445 184825637 -57838716 + Tigger7 DNA MER2_type 2302 2491 0 * 633 286 115 54 chr1 184825734 184826195 -57838158 + MLT1H LTR MaLR 2 490 -59 2361 85 0 0 chr1 184826271 184826566 -57837787 + AluSp SINE Alu 6 300 -13 1050 143 0 0 chr1 184826567 184826728 -57837625 + AluSg/x SINE Alu 125 285 -25 22 35 0 0 chr1 184827177 184827206 -57837147 + AT_rich Low_complexity Low_complexity 1 29 0 1052 116 0 0 chr1 184827679 184827825 -57836528 + AluSp/q SINE Alu 154 299 -14 256 326 0 20 chr1 184828065 184828212 -57836141 + A-rich Low_complexity Low_complexity 3 146 0 307 365 126 5 chr1 184828354 184828568 -57835785 + HAL1b LINE L1 313 552 -796 5421 174 19 10 chr1 184828698 184829700 -57834653 + Tigger1 DNA MER2_type 6 1016 -1402 366 285 124 22 chr1 184831633 184831770 -57832583 - MER5B DNA MER1_type -11 167 17 237 263 25 38 chr1 184831957 184832037 -57832316 - MER5B DNA MER1_type -75 103 25 253 264 47 47 chr1 184832170 184832276 -57832077 + MIR SINE MIR 147 252 -10 2204 119 3 0 chr1 184832773 184833075 -57831278 - AluSg SINE Alu -7 303 1 198 284 81 40 chr1 184833775 184833849 -57830504 - L2 LINE L2 -1125 2189 2113 1153 286 53 12 chr1 184834210 184834797 -57829556 - L1M4 LINE L1 -2829 3317 2707 1304 281 80 25 chr1 184834805 184835443 -57828910 + L1 LINE L1 2922 3594 -3971 4857 217 41 40 chr1 184835447 184836813 -57827540 + L1 LINE L1 5322 6692 -873 1477 232 30 28 chr1 184836813 184837206 -57827147 + MSTD LTR MaLR 1 394 -2 4857 217 41 40 chr1 184837206 184837268 -57827085 + L1 LINE L1 6692 6752 -813 846 208 51 127 chr1 184837270 184837665 -57826688 - MLT1A1 LTR MaLR 0 365 1 5102 231 55 35 chr1 184837670 184838889 -57825464 - MLT1A1-int LTR MaLR -13 1722 479 26 50 0 0 chr1 184839032 184839072 -57825281 + AT_rich Low_complexity Low_complexity 1 40 0 3588 137 19 91 chr1 184840347 184841182 -57823171 + LTR1 LTR ERV1 11 785 0 1979 32 0 0 chr1 184841274 184841522 -57822831 - L1PA4 LINE L1 -795 5351 5104 6600 28 3 0 chr1 184841523 184842304 -57822049 + L1PA4 LINE L1 5369 6151 -4 24 53 0 0 chr1 184842664 184842702 -57821651 + AT_rich Low_complexity Low_complexity 1 38 0 336 48 0 0 chr1 184843171 184843213 -57821140 + (TG)n Simple_repeat Simple_repeat 1 42 0 28 48 0 0 chr1 184843420 184843462 -57820891 + AT_rich Low_complexity Low_complexity 1 42 0 613 201 15 50 chr1 184843548 184843707 -57820646 + MSTC LTR MaLR 27 186 -242 356 313 43 43 chr1 184844591 184844872 -57819481 - L1MCc LINE L1 -6136 287 7 21 0 0 0 chr1 184845252 184845273 -57819080 + AT_rich Low_complexity Low_complexity 1 21 0 469 274 116 42 chr1 184845530 184845745 -57818608 - MIR SINE MIR -31 231 1 1931 116 10 10 chr1 184846857 184847149 -57817204 + AluSx SINE Alu 1 292 -20 21 71 0 0 chr1 184847641 184847683 -57816670 + AT_rich Low_complexity Low_complexity 1 42 0 183 254 0 32 chr1 184848098 184848161 -57816192 - L2 LINE L2 0 3313 3253 216 304 25 13 chr1 184848271 184848350 -57816003 - L2 LINE L2 -4 3309 3230 202 96 0 96 chr1 184848877 184848919 -57815434 + (CAAAAA)n Simple_repeat Simple_repeat 1 39 -8 2454 74 0 3 chr1 184848919 184849231 -57815122 + AluY SINE Alu 1 311 0 202 96 0 96 chr1 184849231 184849240 -57815113 + (CAAAAA)n Simple_repeat Simple_repeat 39 47 0 1613 178 27 7 chr1 184849240 184849533 -57814820 + AluJb SINE Alu 14 312 0 21 36 0 0 chr1 184850922 184850950 -57813403 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 184851103 184851125 -57813228 + AT_rich Low_complexity Low_complexity 1 22 0 239 360 69 52 chr1 184851396 184851629 -57812724 + MIR SINE MIR 12 248 -14 * 278 269 297 0 chr1 184851571 184851716 -57812637 - MIR SINE MIR -10 252 65 1861 132 21 3 chr1 184851862 184852151 -57812202 - AluSx SINE Alu -18 294 1 593 286 48 4 chr1 184853628 184853859 -57810494 + L1ME LINE L1 5373 5613 -551 1281 294 55 11 chr1 184853871 184854307 -57810046 + L1M2 LINE L1 19 473 -6376 346 315 197 39 chr1 184854312 184854591 -57809762 + L1M2 LINE L1 607 929 -5920 308 299 109 44 chr1 184854667 184854804 -57809549 + L1PBb LINE L1 669 814 -6035 340 348 58 0 chr1 184854962 184855117 -57809236 + L1PBb LINE L1 671 834 -6015 572 208 29 142 chr1 184855230 184855504 -57808849 + L1PBb LINE L1 823 1065 -5784 6215 268 40 22 chr1 184855671 184858302 -57806051 + L1PBb LINE L1 1000 3791 -3057 2468 52 0 7 chr1 184858302 184858608 -57805745 + AluY SINE Alu 1 304 -7 6215 268 40 22 chr1 184858608 184858749 -57805604 + L1PBb LINE L1 3791 3928 -2920 2845 161 14 2 chr1 184858730 184859234 -57805119 + L1PB4 LINE L1 5278 5787 -369 * 229 85 85 0 chr1 184859307 184859354 -57804999 + (TATAG)n Simple_repeat Simple_repeat 3 53 0 211 139 70 35 chr1 184859373 184859545 -57804808 + (TA)n Simple_repeat Simple_repeat 2 179 0 318 250 21 10 chr1 184859551 184859647 -57804706 - L1MC4 LINE L1 -1333 6709 6613 216 122 0 0 chr1 184859647 184859688 -57804665 + (TA)n Simple_repeat Simple_repeat 2 42 0 1929 162 14 17 chr1 184859695 184860047 -57804306 + L1PB4 LINE L1 5793 6143 -13 1114 284 96 19 chr1 184860765 184861287 -57803066 + L1ME2 LINE L1 5593 6154 -10 370 293 93 53 chr1 184861455 184861605 -57802748 - L2 LINE L2 0 3313 3158 1240 186 75 53 chr1 184861644 184861680 -57802673 - MLT2B2 LTR ERVL -1 519 485 405 0 0 0 chr1 184861680 184861725 -57802628 + (TG)n Simple_repeat Simple_repeat 2 46 0 1240 186 75 53 chr1 184861725 184862015 -57802338 - MLT2B2 LTR ERVL -35 485 83 1742 120 71 0 chr1 184862015 184862307 -57802046 - AluSq SINE Alu 0 311 1 1240 186 75 53 chr1 184862307 184862392 -57801961 - MLT2B2 LTR ERVL -437 83 1 330 342 9 0 chr1 184862472 184862586 -57801767 + MIR3 SINE MIR 79 193 -15 37 23 0 0 chr1 184863302 184863346 -57801007 + AT_rich Low_complexity Low_complexity 1 44 0 285 373 8 51 chr1 184864874 184864992 -57799361 - L2 LINE L2 -3 3269 3157 688 296 155 17 chr1 184865219 184865625 -57798728 - L2 LINE L2 -943 2371 1910 1287 283 137 13 chr1 184865865 184866477 -57797876 + L1ME3A LINE L1 5469 6156 -14 303 280 52 47 chr1 184866493 184866686 -57797667 + L1MEd LINE L1 758 951 -5168 257 68 23 0 chr1 184867003 184867047 -57797306 + (CAA)n Simple_repeat Simple_repeat 3 47 0 402 248 45 93 chr1 184867307 184867500 -57796853 + L1M4 LINE L1 3436 3616 -2530 2181 128 0 0 chr1 184867500 184867812 -57796541 - AluSx SINE Alu 0 312 1 402 248 45 93 chr1 184867812 184867864 -57796489 + L1M4 LINE L1 3616 3669 -2477 180 111 0 0 chr1 184868224 184868251 -57796102 + (TATG)n Simple_repeat Simple_repeat 2 28 0 231 345 7 20 chr1 184868402 184868550 -57795803 + L1M4 LINE L1 4217 4362 -1784 697 296 62 45 chr1 184868654 184869082 -57795271 + L1M4 LINE L1 4612 5058 -1088 400 95 81 0 chr1 184869082 184869156 -57795197 + MADE1 DNA Mariner 1 80 0 697 296 62 45 chr1 184869156 184869419 -57794934 + L1M4 LINE L1 5058 5315 -831 30 27 0 0 chr1 184869462 184869499 -57794854 + AT_rich Low_complexity Low_complexity 1 37 0 528 116 0 0 chr1 184869612 184869707 -57794646 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 21 0 0 0 chr1 184870141 184870162 -57794191 + AT_rich Low_complexity Low_complexity 1 21 0 663 329 97 0 chr1 184870546 184870774 -57793579 - MIR SINE MIR -3 259 10 207 286 26 26 chr1 184871780 184871857 -57792496 - MIR SINE MIR -30 232 156 422 350 25 6 chr1 184872685 184872848 -57791505 + MIR SINE MIR 63 228 -34 341 349 53 40 chr1 184872837 184873158 -57791195 - L2 LINE L2 -27 3245 2921 * 409 215 8 62 chr1 184874662 184874792 -57789561 + L1M4 LINE L1 5175 5297 -849 1544 189 70 47 chr1 184874924 184875311 -57789042 - MSTD LTR MaLR 0 396 1 601 303 197 19 chr1 184875336 184875798 -57788555 + L2 LINE L2 2235 2778 -536 389 290 61 30 chr1 184875766 184875897 -57788456 + L2 LINE L2 3178 3312 -1 * 259 345 111 59 chr1 184875904 184876211 -57788142 + L2 LINE L2 2543 2865 -449 390 335 117 15 chr1 184876606 184876803 -57787550 + MIR SINE MIR 20 236 -26 273 299 129 60 chr1 184876886 184877087 -57787266 + MIR SINE MIR 48 262 0 231 36 0 0 chr1 184878039 184878067 -57786286 + (TG)n Simple_repeat Simple_repeat 2 29 0 211 325 0 52 chr1 184878535 184878612 -57785741 - L2 LINE L2 0 3272 3200 388 272 83 17 chr1 184879039 184879219 -57785134 + L2 LINE L2 3116 3307 -6 23 0 0 0 chr1 184879363 184879386 -57784967 + AT_rich Low_complexity Low_complexity 1 23 0 182 290 43 0 chr1 184879391 184879460 -57784893 - L2 LINE L2 -576 2738 2667 313 178 0 69 chr1 184879803 184879904 -57784449 + L1MA4A LINE L1 6210 6303 0 3785 61 2 4 chr1 184880051 184880545 -57783808 - L1PA7 LINE L1 -15 6139 5647 1194 91 1 2 chr1 184880546 184880721 -57783632 + L1PA7 LINE L1 5498 5647 -507 329 325 42 8 chr1 184880943 184881063 -57783290 - L2 LINE L2 0 3313 3190 199 179 26 0 chr1 184881199 184881238 -57783115 + L3 LINE CR1 750 789 -788 297 323 205 0 chr1 184881320 184881481 -57782872 - L3 LINE CR1 -916 661 468 246 32 0 0 chr1 184881662 184881693 -57782660 + (A)n Simple_repeat Simple_repeat 1 31 0 447 284 71 82 chr1 184881742 184882039 -57782314 - LTR68 LTR ERV1 -295 445 153 2386 182 20 27 chr1 184882039 184882528 -57781825 - MER66B LTR ERV1 0 486 1 447 284 71 82 chr1 184882528 184882680 -57781673 - LTR68 LTR ERV1 -587 153 1 297 0 0 0 chr1 184882829 184882862 -57781491 + (A)n Simple_repeat Simple_repeat 1 33 0 339 25 0 0 chr1 184883758 184883798 -57780555 + (TC)n Simple_repeat Simple_repeat 1 40 0 195 69 0 0 chr1 184885069 184885098 -57779255 + (GA)n Simple_repeat Simple_repeat 1 29 0 318 67 0 0 chr1 184885177 184885222 -57779131 + (CA)n Simple_repeat Simple_repeat 2 46 0 36 53 0 0 chr1 184885394 184885451 -57778902 + AT_rich Low_complexity Low_complexity 1 57 0 197 62 0 31 chr1 184885915 184885947 -57778406 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 25 0 0 0 chr1 184887411 184887436 -57776917 + AT_rich Low_complexity Low_complexity 1 25 0 256 310 170 21 chr1 184887590 184887801 -57776552 + MIR SINE MIR 10 249 -13 242 366 34 6 chr1 184889867 184890042 -57774311 - MLT1-int LTR MaLR -831 540 361 425 216 239 12 chr1 184890236 184890403 -57773950 - MLT1F LTR MaLR 0 542 338 1014 328 25 3 chr1 184890531 184890845 -57773508 - MLT2E LTR ERVL -307 321 1 444 342 82 18 chr1 184890924 184891254 -57773099 - LTR33 LTR ERVL -6 515 165 450 270 100 83 chr1 184891699 184892328 -57772025 + L1MEd LINE L1 596 1235 -4884 268 324 87 51 chr1 184892368 184892680 -57771673 + L1MEd LINE L1 1348 1670 -4640 232 325 0 18 chr1 184892981 184893095 -57771258 + A-rich Low_complexity Low_complexity 5 116 0 23 0 0 0 chr1 184893353 184893376 -57770977 + AT_rich Low_complexity Low_complexity 1 23 0 299 279 176 12 chr1 184893813 184893978 -57770375 - MIR SINE MIR -13 249 58 2273 116 48 20 chr1 184894149 184894503 -57769850 + THE1B LTR MaLR 1 364 0 1143 291 38 34 chr1 184895584 184896028 -57768325 - LTR16A1 LTR ERVL -5 452 7 2151 126 0 3 chr1 184896582 184896891 -57767462 + AluSg SINE Alu 1 308 -2 258 219 62 0 chr1 184897494 184897558 -57766795 - MIR3 SINE MIR 0 208 141 283 143 0 0 chr1 184897624 184897666 -57766687 - LTR16B LTR ERVL 0 464 423 1477 168 181 24 chr1 184897666 184898036 -57766317 + MSTA LTR MaLR 1 428 0 7743 144 5 40 chr1 184898038 184899679 -57764674 + MSTA-int LTR MaLR 3 1577 -3 1601 172 124 60 chr1 184899682 184899860 -57764493 + MSTA LTR MaLR 1 166 -262 1698 70 0 48 chr1 184899860 184900090 -57764263 + AluY SINE Alu 80 298 -13 1601 172 124 60 chr1 184900090 184900313 -57764040 + MSTA LTR MaLR 166 428 0 538 289 39 5 chr1 184900316 184900520 -57763833 - LTR16B LTR ERVL -40 424 214 661 200 34 0 chr1 184900539 184900714 -57763639 + MER53 DNA DNA 9 189 0 429 291 115 50 chr1 184900725 184900907 -57763446 - LTR16B LTR ERVL -270 194 1 305 257 14 0 chr1 184901373 184901447 -57762906 - MLT1I LTR MaLR -26 383 309 1960 184 43 45 chr1 184901795 184902263 -57762090 + MLT1C LTR MaLR 1 467 0 535 224 17 17 chr1 184902696 184902812 -57761541 - MIR SINE MIR -58 150 35 2737 187 27 7 chr1 184902914 184903512 -57760841 + L1MB7 LINE L1 5560 6169 -15 838 150 0 23 chr1 184903565 184903698 -57760655 - FLAM_C SINE Alu -2 131 2 242 386 93 0 chr1 184905097 184905237 -57759116 + MIR SINE MIR 23 175 -87 316 302 41 43 chr1 184905819 184906047 -57758306 - L1 LINE L1 -1674 4472 4244 1952 214 17 46 chr1 184906047 184906567 -57757786 - MLT1D LTR MaLR 0 505 1 316 302 41 43 chr1 184906567 184906745 -57757608 - L1 LINE L1 -1902 4244 4067 262 302 71 8 chr1 184907470 184907596 -57756757 + L1MC4 LINE L1 7451 7584 -458 381 277 144 66 chr1 184907634 184908045 -57756308 + L1MC4 LINE L1 7600 8042 0 459 333 105 24 chr1 184908108 184908490 -57755863 - L1 LINE L1 -2844 3302 2890 281 368 103 19 chr1 184908553 184908708 -57755645 - MER91A DNA MER1_type -28 168 1 763 208 6 49 chr1 184909272 184909455 -57754898 - FAM SINE Alu 0 175 1 289 302 39 29 chr1 184909458 184909663 -57754690 - L1M4 LINE L1 -1379 4767 4561 323 358 86 0 chr1 184910054 184910216 -57754137 - L1MEc LINE L1 -6211 185 10 224 333 0 17 chr1 184910410 184910527 -57753826 + CT-rich Low_complexity Low_complexity 3 117 0 2282 116 0 0 chr1 184910660 184910963 -57753390 + AluSx SINE Alu 1 303 -9 2025 196 19 38 chr1 184911041 184911511 -57752842 + LOR1b LTR ERV1 1 461 0 1488 219 48 8 chr1 184911528 184911879 -57752474 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr1 184911940 184911975 -57752378 + AT_rich Low_complexity Low_complexity 1 35 0 307 218 23 11 chr1 184913160 184913247 -57751106 - LTR33 LTR ERVL -4 517 430 745 209 9 111 chr1 184913331 184913556 -57750797 - MLT1B LTR MaLR -2 388 187 690 281 38 58 chr1 184914273 184914672 -57749681 - MER93a LTR ERV1 -11 391 1 28 61 0 0 chr1 184916906 184916955 -57747398 + AT_rich Low_complexity Low_complexity 1 49 0 736 289 43 40 chr1 184916975 184917304 -57747049 - L1MC/D LINE L1 -2051 5757 5428 21 36 0 0 chr1 184917411 184917439 -57746914 + AT_rich Low_complexity Low_complexity 1 28 0 631 296 25 15 chr1 184917487 184917686 -57746667 - MIR SINE MIR -36 226 26 21 57 0 0 chr1 184918051 184918086 -57746267 + AT_rich Low_complexity Low_complexity 1 35 0 284 256 66 44 chr1 184918219 184918356 -57745997 + MIR SINE MIR 74 213 -49 184 328 52 60 chr1 184918449 184918583 -57745770 + MIR3 SINE MIR 41 173 -35 12464 29 2 2 chr1 184920120 184922440 -57741913 + L1PA3 LINE L1 3896 6216 0 2498 42 3 13 chr1 184922447 184922755 -57741598 + AluY SINE Alu 1 305 -6 325 290 139 89 chr1 184923574 184924057 -57740296 - MLT1J LTR MaLR -4 507 1 8190 199 24 3 chr1 184924125 184925615 -57738738 + MLT1A1-int LTR MaLR 132 1651 0 1932 181 77 3 chr1 184925616 184925991 -57738362 + MSTA LTR MaLR 2 404 -24 1531 188 15 6 chr1 184925991 184926315 -57738038 - L1M3 LINE L1 -569 5599 5273 493 293 18 12 chr1 184926785 184926952 -57737401 + GA-rich Low_complexity Low_complexity 1 168 0 291 175 291 19 chr1 184927189 184927292 -57737061 + MLT1A1 LTR MaLR 1 131 -493 2128 184 36 2 chr1 184927298 184927710 -57736643 - MSTB LTR MaLR 0 409 1 1003 270 40 105 chr1 184927710 184928261 -57736092 + MLT1E2 LTR MaLR 108 622 -4 22 80 0 0 chr1 184929130 184929180 -57735173 + AT_rich Low_complexity Low_complexity 1 50 0 240 260 96 0 chr1 184929382 184929455 -57734898 - L2 LINE L2 -9 3304 3225 1892 152 7 0 chr1 184929556 184929839 -57734514 + AluSq SINE Alu 1 285 -28 959 87 11 33 chr1 184929842 184930026 -57734327 + (GAA)n Simple_repeat Simple_repeat 1 180 0 376 152 0 15 chr1 184930026 184930092 -57734261 + GA-rich Low_complexity Low_complexity 2 66 0 601 160 16 8 chr1 184930092 184930217 -57734136 + G-rich Low_complexity Low_complexity 5 130 0 196 194 0 32 chr1 184930214 184930276 -57734077 + GA-rich Low_complexity Low_complexity 3 62 0 * 1480 347 74 38 chr1 184930359 184931243 -57733110 - L2 LINE L2 -390 2924 2003 1250 206 64 4 chr1 184931243 184931510 -57732843 + AluJo SINE Alu 1 283 -29 1480 347 74 38 chr1 184931510 184931557 -57732796 - L2 LINE L2 -1311 2003 1959 256 414 82 5 chr1 184931832 184932040 -57732313 - L2 LINE L2 -2969 345 122 2137 77 0 4 chr1 184932220 184932494 -57731859 + AluY SINE Alu 39 311 0 259 310 0 69 chr1 184932568 184932655 -57731698 - L2 LINE L2 -5 3267 3187 643 332 56 61 chr1 184934299 184934853 -57729500 + L2 LINE L2 2044 2594 -720 470 267 221 29 chr1 184935229 184935301 -57729052 - L2 LINE L2 0 3313 3256 318 50 0 0 chr1 184935301 184935341 -57729012 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 470 267 221 29 chr1 184935341 184935575 -57728778 - L2 LINE L2 -57 3256 2948 22 35 0 0 chr1 184935611 184935640 -57728713 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 184935700 184935724 -57728629 + AT_rich Low_complexity Low_complexity 1 24 0 724 291 39 4 chr1 184935872 184936106 -57728247 + MIR SINE MIR 21 262 0 2703 127 33 33 chr1 184936245 184936354 -57727999 - Tigger3(Golem) DNA MER2_type -12 3016 2908 2117 184 52 2 chr1 184936354 184936756 -57727597 - MSTB LTR MaLR -4 422 1 2703 127 33 33 chr1 184936756 184937133 -57727220 - Tigger3(Golem) DNA MER2_type -119 2909 2530 234 345 0 0 chr1 184937139 184937197 -57727156 - Tigger3(Golem) DNA MER2_type -2971 58 1 867 216 77 108 chr1 184937486 184937810 -57726543 - MLT1A2 LTR MaLR -17 357 44 1894 171 3 3 chr1 184937811 184938110 -57726243 + AluJb SINE Alu 1 299 -13 252 292 67 17 chr1 184938676 184938796 -57725557 - L2 LINE L2 -1360 1954 1829 30094 33 2 2 chr1 184938802 184943257 -57721096 + L1PA3 LINE L1 1701 6152 -3 1821 157 0 26 chr1 184945056 184945368 -57718985 - AluSx SINE Alu -8 304 1 238 334 80 43 chr1 184945913 184946215 -57718138 + L2 LINE L2 1787 2099 -1215 30 27 0 0 chr1 184946801 184946838 -57717515 + AT_rich Low_complexity Low_complexity 1 37 0 2375 96 8 38 chr1 184946843 184946920 -57717433 - THE1A LTR MaLR 0 355 277 1217 167 209 0 chr1 184946920 184947176 -57717177 + AluSx SINE Alu 1 305 0 2375 96 8 38 chr1 184947176 184947463 -57716890 - THE1A LTR MaLR -78 277 1 11239 97 17 1 chr1 184947464 184949018 -57715335 - THE1A-int LTR MaLR -1 1579 1 2337 122 11 3 chr1 184949018 184949370 -57714983 - THE1A LTR MaLR 0 355 1 1705 170 43 35 chr1 184949769 184950139 -57714214 - THE1C LTR MaLR 0 375 3 556 281 136 26 chr1 184952836 184953064 -57711289 - MIR SINE MIR 0 262 10 23 0 0 0 chr1 184953471 184953494 -57710859 + AT_rich Low_complexity Low_complexity 1 23 0 801 197 0 0 chr1 184955428 184955580 -57708773 - L1PA16 LINE L1 -2 6164 6013 3874 149 92 16 chr1 184955588 184956967 -57707386 - pTR5 LTR ERV1 0 2606 1524 3635 127 23 29 chr1 184956967 184957475 -57706878 - L1PA16 LINE L1 -160 6006 5501 2428 72 0 0 chr1 184957475 184957781 -57706572 - AluY SINE Alu -5 306 1 3635 127 23 29 chr1 184957781 184957886 -57706467 - L1PA16 LINE L1 -665 5501 5397 2035 119 11 0 chr1 184959670 184959956 -57704397 + AluSg SINE Alu 1 289 -21 2250 82 0 0 chr1 184960446 184960751 -57703602 + AluY SINE Alu 1 305 0 288 0 0 0 chr1 184961265 184961297 -57703056 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr1 184961810 184961834 -57702519 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr1 184962236 184962262 -57702091 + AT_rich Low_complexity Low_complexity 1 26 0 211 299 186 10 chr1 184962410 184962507 -57701846 + MIR3 SINE MIR 92 205 -3 12311 209 37 37 chr1 184963252 184965843 -57698510 - L1MA4 LINE L1 -7 7712 5122 1845 127 11 18 chr1 184965843 184966168 -57698185 + AluSx SINE Alu 1 323 0 12311 209 37 37 chr1 184966168 184966831 -57697522 - L1MA4 LINE L1 -2597 5122 4460 1157 239 58 4 chr1 184966831 184967107 -57697246 - AluJo SINE Alu -10 292 2 12311 209 37 37 chr1 184967107 184967869 -57696484 - L1MA4 LINE L1 -3259 4460 3699 1804 119 69 108 chr1 184967869 184968248 -57696105 - THE1B LTR MaLR 0 364 1 12311 209 37 37 chr1 184968248 184969928 -57694425 - L1MA4 LINE L1 -4020 3699 2262 766 329 64 23 chr1 184970291 184970726 -57693627 - L1MA4 LINE L1 -5827 1669 1217 215 305 99 46 chr1 184970735 184970886 -57693467 - MIR SINE MIR -26 236 78 27 0 0 0 chr1 184971319 184971346 -57693007 + AT_rich Low_complexity Low_complexity 1 27 0 4161 95 14 5 chr1 184971758 184972345 -57692008 + L1PA13 LINE L1 5552 6143 -20 420 293 20 20 chr1 184972402 184972549 -57691804 - L1M3b LINE L1 -4984 1297 1151 516 269 65 35 chr1 184972682 184973050 -57691303 + L1MEc LINE L1 2061 2439 -3957 512 287 42 49 chr1 184973062 184973327 -57691026 + L1ME1 LINE L1 46 308 -6088 270 0 0 0 chr1 184973459 184973489 -57690864 + (TA)n Simple_repeat Simple_repeat 2 31 0 6409 247 94 34 chr1 184973973 184977743 -57686610 + L1ME1 LINE L1 2201 6204 -31 371 323 43 12 chr1 184978313 184978477 -57685876 - L1M4 LINE L1 -1300 4846 4678 23 54 0 0 chr1 184978491 184978528 -57685825 + AT_rich Low_complexity Low_complexity 1 37 0 303 247 73 125 chr1 184978730 184979017 -57685336 + MARNA DNA Mariner 306 577 -9 359 338 7 26 chr1 184979938 184980089 -57684264 + MLT1J LTR MaLR 115 262 -249 269 162 0 95 chr1 184980591 184980665 -57683688 + HAL1b LINE L1 344 410 -938 5831 166 36 79 chr1 184981841 184982265 -57682088 + L1MA5 LINE L1 3863 4304 -1996 1177 43 0 0 chr1 184982265 184982406 -57681947 + AluY SINE Alu 152 292 -19 5831 166 36 79 chr1 184982406 184984012 -57680341 + L1MA5 LINE L1 4304 5928 -372 525 247 13 26 chr1 184984013 184984167 -57680186 + MLT1D LTR MaLR 344 495 -10 208 143 0 0 chr1 184984327 184984362 -57679991 + (A)n Simple_repeat Simple_repeat 1 35 0 942 167 19 25 chr1 184984364 184984526 -57679827 + FRAM SINE Alu 1 153 -23 419 342 145 43 chr1 184984591 184985260 -57679093 - L2 LINE L2 -1635 1679 943 1769 147 72 93 chr1 184985511 184985750 -57678603 - Tigger2a DNA MER2_type -2274 434 207 2300 78 10 0 chr1 184985750 184986059 -57678294 + AluSq SINE Alu 1 312 -1 1769 147 72 93 chr1 184986059 184986262 -57678091 - Tigger2a DNA MER2_type -2501 207 1 21 36 0 0 chr1 184986282 184986310 -57678043 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 184986517 184986543 -57677810 + AT_rich Low_complexity Low_complexity 1 26 0 462 36 0 0 chr1 184987476 184987532 -57676821 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1303 160 18 0 chr1 184989193 184989412 -57674941 - AluJo SINE Alu -6 306 84 4887 145 26 38 chr1 184989669 184990525 -57673828 - L1PA16 LINE L1 0 6166 5325 2158 109 7 0 chr1 184990525 184990818 -57673535 - AluSg SINE Alu -15 295 1 4887 145 26 38 chr1 184990818 184991001 -57673352 - L1PA16 LINE L1 -841 5325 5141 309 320 106 75 chr1 184991005 184991392 -57672961 - HAL1 LINE L1 -2086 421 23 707 299 70 31 chr1 184992914 184993222 -57671131 + MLT1J1 LTR MaLR 4 332 -114 1557 184 50 138 chr1 184993222 184993781 -57670572 + MER67D LTR ERV1 1 510 -4 707 299 70 31 chr1 184993781 184993860 -57670493 + MLT1J1 LTR MaLR 332 406 -40 268 191 24 24 chr1 184994393 184994477 -57669876 + GA-rich Low_complexity Low_complexity 1 84 0 1976 150 0 0 chr1 184996677 184996984 -57667369 + AluSx SINE Alu 1 307 0 265 224 78 78 chr1 184997060 184997176 -57667177 - MIR SINE MIR 0 262 147 7323 34 5 1 chr1 184998894 185000457 -57663896 - L1PA4 LINE L1 -6 6149 4585 187 241 36 60 chr1 185001292 185001375 -57662978 - MIR SINE MIR -60 202 122 1416 269 122 13 chr1 185001453 185001988 -57662365 - MLT1E LTR MaLR 0 593 1 1409 300 68 21 chr1 185002339 185002855 -57661498 + MLT1H LTR MaLR 5 544 -5 600 324 29 69 chr1 185003500 185003846 -57660507 - L3 LINE CR1 -181 1396 1065 230 0 33 0 chr1 185003969 185003999 -57660354 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 434 333 40 20 chr1 185004095 185004296 -57660057 - L3 LINE CR1 -916 661 457 28 29 0 0 chr1 185004454 185004489 -57659864 + AT_rich Low_complexity Low_complexity 1 35 0 1691 171 14 0 chr1 185004771 185005052 -57659301 + AluJb SINE Alu 23 307 -5 21 0 0 0 chr1 185006685 185006706 -57657647 + AT_rich Low_complexity Low_complexity 1 21 0 919 156 0 0 chr1 185007262 185007403 -57656950 - MLT1A1 LTR MaLR -2 363 223 219 133 0 0 chr1 185007413 185007458 -57656895 + (TA)n Simple_repeat Simple_repeat 2 46 0 258 247 0 32 chr1 185007469 185007562 -57656791 + L1MC4 LINE L1 6614 6703 -1339 1124 148 16 11 chr1 185007574 185007757 -57656596 - MLT1A1 LTR MaLR -171 194 11 2074 127 3 3 chr1 185008297 185008588 -57655765 + AluSg SINE Alu 1 291 -19 214 283 11 65 chr1 185008813 185008905 -57655448 + MIR SINE MIR 108 194 -68 21 36 0 0 chr1 185008932 185008960 -57655393 + AT_rich Low_complexity Low_complexity 1 28 0 1927 164 58 122 chr1 185009118 185009666 -57654687 + MLT2B2 LTR ERVL 1 513 -2 784 187 29 0 chr1 185009857 185009996 -57654357 - MER96 DNA MER1_type? 0 175 33 2412 57 0 17 chr1 185009996 185010297 -57654056 + AluY SINE Alu 1 296 -15 2633 231 51 11 chr1 185010402 185010664 -57653689 - L1ME LINE L1 -590 5576 5326 3570 28 12 0 chr1 185010664 185011096 -57653257 - L1PA4 LINE L1 -1 6154 5718 2633 231 51 11 chr1 185011096 185011886 -57652467 - L1ME LINE L1 -840 5326 4493 13023 179 27 8 chr1 185013107 185015059 -57649294 - L1MA3 LINE L1 -1 7723 5811 2148 131 7 0 chr1 185015059 185015364 -57648989 + AluSq SINE Alu 1 307 -6 13023 179 27 8 chr1 185015364 185016465 -57647888 - L1MA3 LINE L1 -1913 5811 4580 1656 173 3 45 chr1 185016465 185016778 -57647575 - AluSx SINE Alu -7 305 6 13023 179 27 8 chr1 185016778 185017437 -57646916 - L1MA3 LINE L1 -3144 4580 3935 369 225 0 0 chr1 185017457 185017546 -57646807 + (CATATA)n Simple_repeat Simple_repeat 5 93 0 405 164 0 0 chr1 185017577 185017650 -57646703 + (TG)n Simple_repeat Simple_repeat 2 74 0 870 185 11 0 chr1 185017659 185017837 -57646516 - L1MA3 LINE L1 -3662 3903 3724 * 14120 173 32 16 chr1 185017833 185018618 -57645735 - L1MA3 LINE L1 -5042 2523 1752 387 0 0 0 chr1 185018618 185018661 -57645692 + (TG)n Simple_repeat Simple_repeat 2 44 0 14120 173 32 16 chr1 185018661 185020349 -57644004 - L1MA3 LINE L1 -5813 1752 11 1549 194 48 129 chr1 185020909 185021531 -57642822 - LTR49 LTR ERV1 -23 572 1 8711 150 51 20 chr1 185021531 185023430 -57640923 - LTR49-int LTR ERV1 0 6331 4596 189 0 0 0 chr1 185023888 185023909 -57640444 + (TA)n Simple_repeat Simple_repeat 2 22 0 3449 219 97 52 chr1 185023910 185026565 -57637788 - LTR49-int LTR ERV1 -1858 4405 1454 1937 237 100 65 chr1 185026571 185027185 -57637168 - LTR49-int LTR ERV1 -4916 1347 756 2201 116 0 0 chr1 185027185 185027487 -57636866 + AluSc SINE Alu 1 302 -7 1937 237 100 65 chr1 185027487 185027946 -57636407 - LTR49-int LTR ERV1 -5507 756 18 2122 191 89 33 chr1 185027950 185028510 -57635843 - LTR49 LTR ERV1 -23 572 1 1975 115 3 51 chr1 185028660 185029290 -57635063 - MER4A LTR ERV1 0 664 89 3412 134 22 30 chr1 185029367 185029964 -57634389 + MER50 LTR ERV1 1 592 -142 21 36 0 0 chr1 185030332 185030360 -57633993 + AT_rich Low_complexity Low_complexity 1 28 0 3603 205 27 107 chr1 185030484 185031686 -57632667 + MER52A LTR ERV1 651 1755 0 192 77 0 0 chr1 185031887 185031913 -57632440 + (TC)n Simple_repeat Simple_repeat 1 26 0 4112 170 23 3 chr1 185031994 185032746 -57631607 + L1MC1 LINE L1 5287 6053 -280 1991 126 0 11 chr1 185032750 185033056 -57631297 + AluSx SINE Alu 2 304 0 1164 175 63 5 chr1 185033066 185033272 -57631081 + AluJo SINE Alu 75 292 -20 496 146 177 0 chr1 185033272 185033368 -57630985 + L1MC1 LINE L1 6043 6155 -178 1832 254 51 9 chr1 185033369 185033677 -57630676 - L1M4 LINE L1 -876 6065 5771 2347 88 7 0 chr1 185033677 185033973 -57630380 - AluSp SINE Alu -15 298 1 1832 254 51 9 chr1 185033973 185034293 -57630060 - L1M4 LINE L1 -1170 5771 5411 918 261 43 13 chr1 185034348 185034798 -57629555 - L1MCa LINE L1 -3571 3370 2932 1461 285 83 24 chr1 185034817 185036139 -57628214 - L1MCa LINE L1 -4228 2894 1330 297 0 0 0 chr1 185036275 185036308 -57628045 + (TG)n Simple_repeat Simple_repeat 2 34 0 2429 162 5 30 chr1 185036403 185036842 -57627511 - MSTA LTR MaLR 0 428 1 354 291 103 24 chr1 185036851 185037016 -57627337 - L1MCa LINE L1 -5422 1001 824 624 291 78 16 chr1 185037304 185037610 -57626743 - L1MCa LINE L1 -6027 396 72 254 347 126 41 chr1 185037679 185037950 -57626403 + L2 LINE L2 2678 2971 -343 1577 200 12 21 chr1 185038236 185038576 -57625777 - MER4D LTR ERV1 -17 886 550 1620 173 18 0 chr1 185038647 185038925 -57625428 - MER49 LTR ERV1 -638 285 3 190 104 21 21 chr1 185038978 185039026 -57625327 + (TA)n Simple_repeat Simple_repeat 2 49 0 5421 135 166 28 chr1 185039152 185040275 -57624078 + pTR5 LTR ERV1 743 2021 -417 395 194 31 20 chr1 185040278 185040376 -57623977 + LTR30 LTR ERV1 544 642 -80 1471 114 5 12 chr1 185040378 185040615 -57623738 + pTR5 LTR ERV1 171 696 -84 227 365 69 6 chr1 185041256 185041415 -57622938 + MIR SINE MIR 84 252 -10 2229 203 19 46 chr1 185041608 185042130 -57622223 - MER67D LTR ERV1 -5 509 2 431 198 117 10 chr1 185042225 185042371 -57621982 - MLT1H LTR MaLR 0 549 241 304 340 0 10 chr1 185042751 185042848 -57621505 - L2 LINE L2 -15 3298 3203 1117 209 83 7 chr1 185043182 185043483 -57620870 - MER33 DNA MER1_type 0 324 1 289 385 43 13 chr1 185043797 185044028 -57620325 - L2 LINE L2 -939 2375 2138 299 261 31 39 chr1 185044799 185044929 -57619424 - MLT1K LTR MaLR -27 561 433 228 277 89 30 chr1 185045069 185045170 -57619183 - L2 LINE L2 -2029 1285 1179 216 67 0 0 chr1 185046523 185046553 -57617800 + (CA)n Simple_repeat Simple_repeat 1 30 0 193 301 151 42 chr1 185046572 185046738 -57617615 - MIR SINE MIR -58 204 21 593 264 43 4 chr1 185047059 185047294 -57617059 + MER113 DNA MER1_type? 1 244 -277 25 31 0 0 chr1 185047442 185047474 -57616879 + AT_rich Low_complexity Low_complexity 1 32 0 414 111 28 0 chr1 185049821 185049893 -57614460 - L1PB3 LINE L1 -8 6146 6073 2019 105 29 7 chr1 185050016 185050330 -57614023 + AluSg SINE Alu 2 321 0 685 275 32 42 chr1 185050592 185050876 -57613477 + L1MCc LINE L1 185 465 -5958 2468 216 72 47 chr1 185051100 185052021 -57612332 + L1ME1 LINE L1 5206 6162 -4 294 373 99 25 chr1 185052054 185052376 -57611977 - L2 LINE L2 -337 2977 2632 819 217 46 10 chr1 185052376 185052738 -57611615 + LTR52 LTR ERVL 1 420 -1 212 311 107 0 chr1 185052926 185053029 -57611324 - L2 LINE L2 -927 2387 2274 255 103 0 0 chr1 185053422 185053461 -57610892 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1649 133 4 4 chr1 185053463 185053704 -57610649 - AluSx SINE Alu -24 288 48 795 227 56 5 chr1 185054034 185054320 -57610033 - LTR52 LTR ERVL -1 420 76 503 139 0 0 chr1 185054320 185054406 -57609947 + AluS SINE Alu 221 306 -3 27 81 0 0 chr1 185054461 185054523 -57609830 + AT_rich Low_complexity Low_complexity 1 62 0 32 43 0 0 chr1 185058456 185058502 -57605851 + AT_rich Low_complexity Low_complexity 1 46 0 191 282 59 24 chr1 185058838 185058923 -57605430 + MIR SINE MIR 124 211 -51 467 278 76 45 chr1 185059149 185059347 -57605006 - LTR67 LTR ERVL -2 555 352 227 311 115 16 chr1 185059541 185059663 -57604690 - L2 LINE L2 0 3272 3139 1187 198 92 55 chr1 185059751 185059783 -57604570 - MER2 DNA MER2_type -3 342 313 2172 126 22 30 chr1 185059783 185060149 -57604204 + THE1B LTR MaLR 1 363 -1 1187 198 92 55 chr1 185060149 185060444 -57603909 - MER2 DNA MER2_type -32 313 3 22 35 0 0 chr1 185060498 185060527 -57603826 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr1 185062312 185062337 -57602016 + (TA)n Simple_repeat Simple_repeat 2 26 0 323 340 0 0 chr1 185065485 185065588 -57598765 + MIR SINE MIR 39 141 -121 258 326 75 50 chr1 185066260 185066499 -57597854 + MIR SINE MIR 17 261 -1 200 229 21 0 chr1 185066948 185066996 -57597357 - L2 LINE L2 -1 3312 3264 31 44 0 0 chr1 185068094 185068139 -57596214 + AT_rich Low_complexity Low_complexity 1 45 0 2913 166 18 2 chr1 185069423 185069912 -57594441 - LOR1a LTR ERV1 0 497 1 522 133 11 22 chr1 185069917 185070007 -57594346 - LOR1a-int LTR ERV1 -2 8118 8030 * 1746 111 11 4 chr1 185070006 185070268 -57594085 - LOR1a-int LTR ERV1 -2056 6064 5801 * 28513 126 47 29 chr1 185070258 185070860 -57593493 - LOR1a-int LTR ERV1 -2596 5524 4934 1712 145 50 63 chr1 185070860 185071083 -57593270 - THE1C LTR MaLR 0 375 158 2574 47 0 0 chr1 185071083 185071383 -57592970 + AluY SINE Alu 2 301 -10 1712 145 50 63 chr1 185071383 185071539 -57592814 - THE1C LTR MaLR -217 158 1 28513 126 47 29 chr1 185071539 185073169 -57591184 - LOR1a-int LTR ERV1 -3186 4934 3334 6961 137 30 35 chr1 185073169 185074454 -57589899 + MER52C LTR ERV1 1 1278 0 28513 126 47 29 chr1 185074454 185077448 -57586905 - LOR1a-int LTR ERV1 -4786 3334 207 2257 153 36 24 chr1 185077419 185077831 -57586522 - LOR1a-int LTR ERV1 -7703 417 1 * 279 143 0 0 chr1 185077831 185077873 -57586480 - LOR1a LTR ERV1 0 497 456 2562 172 42 8 chr1 185077873 185078350 -57586003 - LOR1a LTR ERV1 -4 493 1 221 111 0 74 chr1 185078769 185078823 -57585530 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 1939 119 3 31 chr1 185078825 185079119 -57585234 - AluSx SINE Alu -26 286 1 24 0 0 0 chr1 185079223 185079247 -57585106 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr1 185079685 185079716 -57584637 + AT_rich Low_complexity Low_complexity 1 31 0 348 24 0 0 chr1 185080203 185080244 -57584109 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 10161 134 6 4 chr1 185080281 185081896 -57582457 + L1PA10 LINE L1 3290 4906 -1240 33358 53 8 1 chr1 185081906 185086948 -57577405 - L1PA5 LINE L1 -4 6150 1074 823 75 0 0 chr1 185086936 185087056 -57577297 + L1PA5 LINE L1 955 1074 -5072 * 5630 109 10 8 chr1 185087054 185088359 -57575994 + L1PA10 LINE L1 4892 6168 0 486 154 22 0 chr1 185088487 185088578 -57575775 + L1MA10 LINE L1 6235 6327 -7 327 340 107 0 chr1 185088650 185088809 -57575544 - MIR SINE MIR -41 221 46 2121 121 3 0 chr1 185088961 185089259 -57575094 + AluSg SINE Alu 1 299 -11 310 337 0 0 chr1 185089260 185089349 -57575004 + L1MC4 LINE L1 6615 6703 -1339 221 160 0 20 chr1 185089353 185089403 -57574950 + (TA)n Simple_repeat Simple_repeat 1 49 0 198 71 0 0 chr1 185090382 185090410 -57573943 + (GA)n Simple_repeat Simple_repeat 1 28 0 4269 6 0 0 chr1 185091220 185091701 -57572652 - L1HS LINE L1 -3 6152 5672 213 329 57 21 chr1 185092606 185092746 -57571607 - MIR SINE MIR -52 210 66 186 146 98 0 chr1 185095085 185095126 -57569227 - L2 LINE L2 -823 2491 2447 182 146 0 24 chr1 185095171 185095212 -57569141 + (TTTTC)n Simple_repeat Simple_repeat 3 42 0 2141 155 5 16 chr1 185095225 185095593 -57568760 - THE1B LTR MaLR 0 364 1 309 26 0 0 chr1 185096424 185096462 -57567891 + (TG)n Simple_repeat Simple_repeat 1 38 0 2800 10 0 0 chr1 185096505 185096816 -57567537 - AluYa5 SINE Alu 0 311 1 2139 90 0 4 chr1 185096973 185097252 -57567101 + AluY SINE Alu 2 279 -32 183 42 0 0 chr1 185097252 185097276 -57567077 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 767 230 0 25 chr1 185098427 185098588 -57565765 - MER5A DNA MER1_type -26 163 7 263 148 0 16 chr1 185098802 185098863 -57565490 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 1788 107 0 8 chr1 185100682 185100935 -57563418 - AluSx SINE Alu -12 300 50 181 388 35 17 chr1 185101524 185101640 -57562713 + MIR SINE MIR 20 137 -125 903 228 11 0 chr1 185101857 185102037 -57562316 + MER5A DNA MER1_type 3 184 -5 271 165 38 25 chr1 185102115 185102195 -57562158 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 1151 170 93 111 chr1 185103552 185103905 -57560448 + MER7A DNA MER2_type 2 346 0 255 133 0 0 chr1 185103910 185103955 -57560398 + (CA)n Simple_repeat Simple_repeat 2 46 0 2080 129 137 13 chr1 185104175 185104556 -57559797 - MSTA LTR MaLR 0 428 1 1837 181 85 149 chr1 185104921 185105862 -57558491 - LTR28 LTR ERV1 0 1020 1 356 243 113 103 chr1 185105880 185106209 -57558144 + L1MC4a LINE L1 5535 5866 -1942 26 30 0 0 chr1 185106399 185106432 -57557921 + AT_rich Low_complexity Low_complexity 1 33 0 291 28 0 0 chr1 185106571 185106607 -57557746 + (TG)n Simple_repeat Simple_repeat 1 36 0 492 331 7 7 chr1 185106618 185106757 -57557596 - MIR SINE MIR -116 146 8 207 0 0 0 chr1 185107427 185107450 -57556903 + (TG)n Simple_repeat Simple_repeat 2 24 0 2059 127 6 13 chr1 185108351 185108665 -57555688 - AluSx SINE Alu 0 312 1 649 294 6 6 chr1 185109714 185109894 -57554459 - L2 LINE L2 -725 2589 2410 22 80 0 0 chr1 185109938 185109988 -57554365 + AT_rich Low_complexity Low_complexity 1 50 0 1930 124 3 18 chr1 185110436 185110718 -57553635 + AluSc SINE Alu 1 278 -31 312 70 0 0 chr1 185110730 185110773 -57553580 + (CA)n Simple_repeat Simple_repeat 2 44 0 327 320 82 0 chr1 185110778 185110925 -57553428 + Tigger8 DNA MER2_type 8 166 -500 623 322 11 35 chr1 185111386 185111647 -57552706 + MLT1I LTR MaLR 91 345 -64 479 115 26 0 chr1 185112984 185113062 -57551291 - MADE1 DNA Mariner 0 80 1 703 256 65 92 chr1 185113642 185113697 -57550656 - L1M4 LINE L1 -928 5218 5163 2420 90 68 8 chr1 185113697 185114051 -57550302 - THE1C LTR MaLR 0 375 1 703 256 65 92 chr1 185114051 185114809 -57549544 - L1M4 LINE L1 -983 5163 4427 304 306 134 64 chr1 185114827 185115141 -57549212 - L1MEd LINE L1 -5781 338 3 1355 211 48 25 chr1 185115480 185115836 -57548517 + MLT1A1 LTR MaLR 2 365 0 21 36 0 0 chr1 185115952 185115980 -57548373 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 185116064 185116088 -57548265 + AT_rich Low_complexity Low_complexity 1 24 0 841 192 133 79 chr1 185116804 185117121 -57547232 + MSTD LTR MaLR 1 334 -62 904 167 161 0 chr1 185117122 185117296 -57547057 + AluJo SINE Alu 95 296 -16 385 127 42 0 chr1 185117304 185117375 -57546978 + MSTD LTR MaLR 323 396 0 3340 234 79 47 chr1 185117377 185118452 -57545901 + MSTD-int LTR MaLR 2 1110 -625 297 177 0 32 chr1 185118443 185118505 -57545848 + MSTD-int LTR MaLR 1662 1721 -14 * 1756 155 28 103 chr1 185118521 185118947 -57545406 + MSTD LTR MaLR 3 396 0 297 341 0 15 chr1 185119387 185119519 -57544834 + GA-rich Low_complexity Low_complexity 4 133 0 22 35 0 0 chr1 185120762 185120791 -57543562 + AT_rich Low_complexity Low_complexity 1 29 0 7143 45 24 0 chr1 185121589 185122503 -57541850 - L1PA5 LINE L1 -6 6148 5233 1949 147 3 7 chr1 185122993 185123293 -57541060 - AluSx SINE Alu -8 304 6 30 0 0 0 chr1 185123296 185123326 -57541027 + AT_rich Low_complexity Low_complexity 1 30 0 1761 124 27 4 chr1 185123353 185123611 -57540742 - AluSx SINE Alu -48 264 1 927 298 25 4 chr1 185124201 185124443 -57539910 + L3 LINE CR1 1327 1573 -4 210 303 9 73 chr1 185125046 185125155 -57539198 + L2 LINE L2 3187 3288 -25 2707 184 18 27 chr1 185125157 185125578 -57538775 + L1PA16 LINE L1 5604 6027 -139 2294 61 27 0 chr1 185125578 185125875 -57538478 + AluY SINE Alu 1 305 -6 1410 53 0 0 chr1 185125879 185126088 -57538265 + (GGAA)n Simple_repeat Simple_repeat 1 209 0 2707 184 18 27 chr1 185126088 185126221 -57538132 + L1PA16 LINE L1 6030 6159 -7 1664 148 41 47 chr1 185126304 185126621 -57537732 + MER47A DNA MER2_type 1 315 -51 4038 154 5 3 chr1 185126896 185127557 -57536796 - L1PA16 LINE L1 -10 6156 5495 366 306 73 57 chr1 185127902 185128216 -57536137 + L1MCc LINE L1 1110 1428 -4995 991 300 124 28 chr1 185128353 185129466 -57534887 + L1MCc LINE L1 1985 3207 -3734 21 0 0 0 chr1 185130316 185130337 -57534016 + AT_rich Low_complexity Low_complexity 1 21 0 5841 107 29 0 chr1 185130554 185131533 -57532820 - L1PA10 LINE L1 -4 6164 5153 1537 165 4 0 chr1 185131533 185131806 -57532547 - L1PA16 LINE L1 -938 5208 4935 1012 88 0 29 chr1 185131846 185131982 -57532371 - AluY SINE Alu -179 132 1 567 216 14 7 chr1 185131982 185132121 -57532232 - L1MEd LINE L1 -3224 2905 2766 265 226 29 29 chr1 185132120 185132222 -57532131 - L1MEd LINE L1 -5026 1093 992 * 8927 198 47 14 chr1 185132652 185133007 -57531346 - L1PB1 LINE L1 -5 6146 5804 2434 105 27 19 chr1 185133007 185133377 -57530976 - THE1C LTR MaLR 0 375 3 8927 198 47 14 chr1 185133377 185136270 -57528083 - L1PB1 LINE L1 -347 5804 2787 436 286 92 50 chr1 185136273 185136749 -57527604 - L1MEd LINE L1 -5026 1093 598 1470 191 33 60 chr1 185136965 185137331 -57527022 + MLT1A1 LTR MaLR 10 365 0 1491 228 84 29 chr1 185137389 185137867 -57526486 - MLT1D LTR MaLR 0 505 2 353 241 113 50 chr1 185138990 185139131 -57525222 + MER5A DNA MER1_type 18 167 -22 973 317 87 43 chr1 185139136 185139723 -57524630 - MLT1L LTR MaLR -2 613 1 13603 156 30 9 chr1 185139966 185141430 -57522923 + Tigger1 DNA MER2_type 1 1534 -884 2514 139 16 12 chr1 185141430 185141722 -57522631 + MER57B LTR ERV1 1 297 -137 252 0 0 0 chr1 185141722 185141750 -57522603 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2514 139 16 12 chr1 185141750 185141889 -57522464 + MER57B LTR ERV1 297 434 0 13603 156 30 9 chr1 185141889 185142792 -57521561 + Tigger1 DNA MER2_type 1534 2417 -1 2287 79 0 16 chr1 185143659 185143964 -57520389 + AluY SINE Alu 1 300 -11 363 329 114 18 chr1 185146506 185146734 -57517619 + MIR SINE MIR 13 262 0 208 390 74 0 chr1 185147399 185147494 -57516859 - MIR SINE MIR -150 112 11 754 228 0 19 chr1 185148680 185148838 -57515515 + MIR SINE MIR 79 233 -29 1987 188 34 3 chr1 185149083 185149466 -57514887 - MSTD LTR MaLR -1 395 1 1659 158 45 63 chr1 185149495 185149698 -57514655 + THE1C LTR MaLR 3 197 -178 491 91 0 13 chr1 185149698 185149775 -57514578 + L1PA4 LINE L1 6072 6147 -8 1659 158 45 63 chr1 185149775 185149951 -57514402 + THE1C LTR MaLR 197 375 0 184 283 189 73 chr1 185150924 185151363 -57512990 + L2 LINE L2 989 1478 -1836 455 0 0 18 chr1 185151485 185151541 -57512812 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 433 346 87 39 chr1 185152388 185152940 -57511413 + L2 LINE L2 1631 2216 -1098 1190 194 41 107 chr1 185152940 185153331 -57511022 + MLT1A1 LTR MaLR 1 365 0 433 346 87 39 chr1 185153331 185153374 -57510979 + L2 LINE L2 2216 2255 -1059 317 43 21 0 chr1 185153386 185153433 -57510920 + (TG)n Simple_repeat Simple_repeat 2 49 0 503 274 96 0 chr1 185153434 185153591 -57510762 + MIR SINE MIR 34 205 -57 221 360 0 0 chr1 185153583 185153669 -57510684 + L2 LINE L2 2283 2368 -946 * 7125 46 8 2 chr1 185154135 185155405 -57508948 - L1PA5 LINE L1 -4 6150 4880 322 155 52 0 chr1 185155939 185155997 -57508356 + MER63 DNA MER1_type 1 687 -149 929 304 93 26 chr1 185156052 185156704 -57507649 - L2 LINE L2 -2 3311 2607 403 241 30 38 chr1 185156706 185156839 -57507514 - L2 LINE L2 -1317 1997 1866 385 243 66 111 chr1 185156868 185156958 -57507395 + MIR SINE MIR 20 112 -150 2315 76 0 3 chr1 185156958 185157246 -57507107 + AluY SINE Alu 1 287 -24 221 0 35 0 chr1 185157250 185157279 -57507074 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 385 243 66 111 chr1 185157279 185157364 -57506989 + MIR SINE MIR 115 192 -70 190 326 23 23 chr1 185157366 185157452 -57506901 + L2 LINE L2 2283 2368 -946 1113 286 58 37 chr1 185157584 185157620 -57506733 - L2 LINE L2 -1464 1850 1816 1649 87 4 40 chr1 185157620 185157872 -57506481 + L1PA10 LINE L1 5918 6160 -8 1113 286 58 37 chr1 185157872 185158349 -57506004 - L2 LINE L2 -1498 1816 1326 865 261 25 0 chr1 185158364 185158563 -57505790 - MER63A DNA MER1_type 0 210 7 967 292 76 61 chr1 185158661 185159055 -57505298 - L2 LINE L2 -2050 1264 865 260 330 59 17 chr1 185159026 185159144 -57505209 + L2 LINE L2 3150 3272 0 * 1395 280 25 8 chr1 185159208 185159572 -57504781 + LTR16A LTR ERVL 60 429 -21 23 54 0 0 chr1 185159756 185159793 -57504560 + AT_rich Low_complexity Low_complexity 1 37 0 949 233 83 7 chr1 185160716 185161017 -57503336 - MER33 DNA MER1_type 0 324 1 2520 95 21 5 chr1 185161935 185162548 -57501805 - L1P3 LINE L1 -551 5621 5003 219 54 18 89 chr1 185162554 185162610 -57501743 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 4317 60 0 9 chr1 185162619 185163183 -57501170 + L1PA8 LINE L1 5611 6169 -3 21 36 0 0 chr1 185163184 185163212 -57501141 + AT_rich Low_complexity Low_complexity 1 28 0 205 267 25 92 chr1 185163385 185163505 -57500848 + MIR SINE MIR 135 246 -16 345 228 69 50 chr1 185163647 185163748 -57500605 - L3 LINE CR1 -1027 550 448 360 43 0 0 chr1 185165040 185165086 -57499267 + (TG)n Simple_repeat Simple_repeat 2 47 0 1841 169 14 8 chr1 185165256 185165612 -57498741 - L1MA7 LINE L1 -4 6287 5930 236 391 38 15 chr1 185166187 185166320 -57498033 - L2 LINE L2 -9 3263 3128 1296 193 59 93 chr1 185167035 185167080 -57497273 + MLT1C LTR MaLR 73 118 -349 2214 120 0 0 chr1 185167080 185167379 -57496974 + AluSx SINE Alu 1 299 -13 1296 193 59 93 chr1 185167379 185167742 -57496611 + MLT1C LTR MaLR 118 467 0 216 0 0 0 chr1 185167823 185167847 -57496506 + (A)n Simple_repeat Simple_repeat 1 24 0 188 119 0 24 chr1 185167944 185167986 -57496367 + (TA)n Simple_repeat Simple_repeat 1 41 0 766 256 110 4 chr1 185168644 185168871 -57495482 - MIR SINE MIR 0 262 12 894 339 169 18 chr1 185169522 185170150 -57494203 - L3 LINE CR1 -11 1566 844 1308 225 42 24 chr1 185170734 185171068 -57493285 - MLT1A1 LTR MaLR -25 340 1 443 302 74 23 chr1 185171120 185171413 -57492940 - MLT1G LTR MaLR -227 328 26 668 230 61 89 chr1 185171648 185171990 -57492363 + LTR38 LTR ERV1 232 547 -9 1489 189 42 23 chr1 185172089 185172395 -57491958 + AluJo SINE Alu 1 312 0 23 68 0 0 chr1 185174210 185174254 -57490099 + AT_rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr1 185174416 185174449 -57489904 + AT_rich Low_complexity Low_complexity 1 33 0 362 167 49 59 chr1 185175263 185175365 -57488988 - L1MA9 LINE L1 -1 6311 6211 5571 158 31 14 chr1 185176028 185177315 -57487038 - L1MA4 LINE L1 -5 6295 4992 622 256 158 78 chr1 185177807 185178154 -57486199 + MLT1L LTR MaLR 235 609 -6 315 206 19 56 chr1 185179191 185179298 -57485055 - MER53 DNA DNA -86 103 1 216 0 0 0 chr1 185180213 185180237 -57484116 + (CA)n Simple_repeat Simple_repeat 1 24 0 3566 154 14 27 chr1 185180795 185181452 -57482901 - Tigger3(Golem) DNA MER2_type -2 3027 2380 894 222 35 15 chr1 185181442 185181645 -57482708 - Tigger3(Golem) DNA MER2_type -2822 207 1 * 2153 123 33 19 chr1 185181669 185182028 -57482325 + THE1B LTR MaLR 1 364 0 11322 96 21 0 chr1 185182029 185183576 -57480777 + THE1B-int LTR MaLR 2 1580 0 2125 138 30 25 chr1 185183576 185183938 -57480415 + THE1B LTR MaLR 1 364 0 400 326 91 4 chr1 185184299 185184529 -57479824 - MLT1I LTR MaLR -151 258 9 503 329 148 41 chr1 185184635 185184928 -57479425 + L2 LINE L2 1880 2140 -1174 736 267 61 8 chr1 185184928 185185175 -57479178 + MIR SINE MIR 1 260 -2 503 329 148 41 chr1 185185175 185185644 -57478709 + L2 LINE L2 2140 2724 -590 294 322 90 80 chr1 185186123 185186412 -57477941 + L2 LINE L2 2897 3188 -84 23 0 0 0 chr1 185187530 185187553 -57476800 + AT_rich Low_complexity Low_complexity 1 23 0 237 235 20 0 chr1 185187654 185187705 -57476648 - LTR16B LTR ERVL 0 464 413 2003 220 45 16 chr1 185187709 185188200 -57476153 - MLT1D LTR MaLR 0 505 1 725 270 50 62 chr1 185188297 185188634 -57475719 - LTR16B LTR ERVL -131 333 1 361 272 32 16 chr1 185188870 185188995 -57475358 - MER94 DNA DNA 0 134 8 237 203 14 29 chr1 185190655 185190706 -57473647 + (CATATA)n Simple_repeat Simple_repeat 2 53 -16 1874 151 3 0 chr1 185190706 185190990 -57473363 + AluSx SINE Alu 1 285 -27 237 203 14 29 chr1 185190990 185191007 -57473346 + (CATATA)n Simple_repeat Simple_repeat 53 69 0 1642 148 137 58 chr1 185191055 185191486 -57472867 - MLT1C LTR MaLR 0 467 3 1748 211 16 39 chr1 185192090 185192526 -57471827 + MLT1C LTR MaLR 1 426 -41 1021 78 0 0 chr1 185192942 185193071 -57471282 - AluSc SINE Alu -178 131 3 22 35 0 0 chr1 185193299 185193328 -57471025 + AT_rich Low_complexity Low_complexity 1 29 0 192 135 0 0 chr1 185193922 185193959 -57470394 + (C)n Simple_repeat Simple_repeat 1 37 0 2156 100 0 0 chr1 185193959 185194238 -57470115 - AluSc SINE Alu -30 279 1 694 281 42 23 chr1 185195863 185196080 -57468273 - MIR SINE MIR -38 224 4 26 0 0 0 chr1 185196248 185196274 -57468079 + AT_rich Low_complexity Low_complexity 1 26 0 324 121 69 17 chr1 185196316 185196374 -57467979 + L1ME LINE L1 5743 5803 -363 316 242 188 0 chr1 185196762 185196890 -57467463 - L1ME1 LINE L1 -5 6161 6010 289 304 35 9 chr1 185196904 185197019 -57467334 - MLT1I LTR MaLR -232 177 60 253 169 28 28 chr1 185197090 185197105 -57467248 - L1MA10 LINE L1 -3 6331 6317 3290 258 94 34 chr1 185197105 185198295 -57466058 - L1ME2 LINE L1 -9 6224 5107 1718 188 0 7 chr1 185198295 185198588 -57465765 - AluJb SINE Alu -21 291 1 3290 258 94 34 chr1 185198588 185198642 -57465711 - L1ME2 LINE L1 -1126 5107 5058 411 56 0 0 chr1 185198642 185198696 -57465657 + (TA)n Simple_repeat Simple_repeat 1 54 0 3290 258 94 34 chr1 185198696 185198725 -57465628 - L1ME2 LINE L1 -1175 5058 5032 327 49 0 0 chr1 185198725 185198766 -57465587 + (TG)n Simple_repeat Simple_repeat 2 42 0 3290 258 94 34 chr1 185198766 185200004 -57464349 - L1ME2 LINE L1 -1201 5032 3870 2078 169 29 3 chr1 185200004 185200382 -57463971 + MLT1B LTR MaLR 1 388 -2 3290 258 94 34 chr1 185200382 185201152 -57463201 - L1ME2 LINE L1 -2363 3870 3148 203 0 37 0 chr1 185201152 185201179 -57463174 + (TA)n Simple_repeat Simple_repeat 2 29 0 3290 258 94 34 chr1 185201179 185201633 -57462720 - L1ME2 LINE L1 -3085 3148 2231 344 93 56 9 chr1 185202110 185202217 -57462136 + (TA)n Simple_repeat Simple_repeat 1 112 0 28 29 0 0 chr1 185202231 185202266 -57462087 + AT_rich Low_complexity Low_complexity 1 35 0 1413 309 133 8 chr1 185202275 185203342 -57461011 - L1ME2 LINE L1 -4135 2261 1062 271 282 90 16 chr1 185203391 185203579 -57460774 - L1ME2 LINE L1 -5484 912 711 837 289 33 0 chr1 185203909 185204120 -57460233 + HERVL40 LTR ERVL 4177 4394 -1136 280 302 74 32 chr1 185204333 185204522 -57459831 + MER89-int LTR ERV1 6316 6512 -289 * 767 243 32 0 chr1 185204507 185204692 -57459661 + HERVL40 LTR ERVL 5319 5509 -21 1321 235 113 31 chr1 185204698 185205178 -57459175 + LTR40a LTR ERVL 1 519 0 348 326 5 41 chr1 185205182 185205400 -57458953 - L1ME2 LINE L1 -5679 717 508 327 310 54 25 chr1 185205559 185205762 -57458591 - L1ME2 LINE L1 -6096 300 92 216 283 71 53 chr1 185208557 185208670 -57455683 + MIR3 SINE MIR 77 191 -17 187 54 54 0 chr1 185208846 185208883 -57455470 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5644 102 18 1 chr1 185208893 185209689 -57454664 - L1PA10 LINE L1 -15 6153 5345 3751 127 8 0 chr1 185209698 185210283 -57454070 + L1PA10 LINE L1 4763 5352 -794 2810 233 66 31 chr1 185210517 185211796 -57452557 + L1ME2 LINE L1 4812 6127 -37 882 275 65 39 chr1 185212483 185212869 -57451484 - MLT1H LTR MaLR -1 548 153 180 77 0 0 chr1 185212980 185213006 -57451347 + (CA)n Simple_repeat Simple_repeat 1 26 0 295 294 97 13 chr1 185213813 185214014 -57450339 + L1M4 LINE L1 4023 4240 -1906 284 324 59 28 chr1 185214409 185214764 -57449589 + L1M4 LINE L1 4625 4990 -1156 1742 223 52 24 chr1 185214847 185215305 -57449048 + MER110 LTR ERV1 1 471 -20 6771 71 6 0 chr1 185215663 185216725 -57447628 + L1PA7 LINE L1 5069 6134 -20 2113 148 53 49 chr1 185217011 185217443 -57446910 - Tigger2a DNA MER2_type 0 434 1 213 372 47 0 chr1 185218315 185218401 -57445952 + L2 LINE L2 3183 3272 0 193 191 64 21 chr1 185218633 185218680 -57445673 - L2 LINE L2 -2 3311 3263 415 276 125 72 chr1 185221221 185221500 -57442853 - L3 LINE CR1 -62 1515 1222 404 298 142 9 chr1 185221914 185222139 -57442214 + MIR SINE MIR 1 249 -13 184 354 62 0 chr1 185222185 185222250 -57442103 + L2 LINE L2 3137 3205 -67 657 319 46 4 chr1 185222596 185222859 -57441494 + MLT1I LTR MaLR 122 395 -14 2233 74 3 20 chr1 185223107 185223404 -57440949 + AluY SINE Alu 1 292 -19 814 184 92 53 chr1 185226280 185226346 -57438007 + U3 snRNA snRNA 1 63 -154 2027 157 37 0 chr1 185226346 185226670 -57437683 + MER1B DNA MER1_type 1 336 -1 814 184 92 53 chr1 185226670 185226810 -57437543 + U3 snRNA snRNA 63 215 -2 2103 140 0 0 chr1 185227689 185227996 -57436357 + AluSc SINE Alu 1 307 -2 205 320 0 13 chr1 185228040 185228115 -57436238 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 * 230 281 0 0 chr1 185228061 185228118 -57436235 + (TA)n Simple_repeat Simple_repeat 2 58 0 23 33 0 0 chr1 185229360 185229390 -57434963 + AT_rich Low_complexity Low_complexity 1 30 0 1503 209 13 20 chr1 185229690 185229878 -57434475 - AluJo SINE Alu -13 299 111 204 40 0 0 chr1 185229878 185229903 -57434450 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 230 0 33 0 chr1 185229902 185229932 -57434421 + (GA)n Simple_repeat Simple_repeat 2 32 0 1503 209 13 20 chr1 185229903 185230044 -57434309 - AluJo SINE Alu -201 111 1 1666 136 28 82 chr1 185230714 185231066 -57433287 - L1MC1 LINE L1 -3 6330 5998 183 216 78 20 chr1 185232085 185232136 -57432217 + MIR SINE MIR 101 154 -108 21 0 0 0 chr1 185232453 185232474 -57431879 + AT_rich Low_complexity Low_complexity 1 21 0 445 155 24 0 chr1 185233380 185233464 -57430889 - L1MD3 LINE L1 -14 7981 7896 1926 130 3 35 chr1 185233650 185233966 -57430387 + AluSq SINE Alu 1 306 -7 42865 30 21 1 chr1 185234764 185240789 -57423564 + L1HS LINE L1 3 6152 -3 222 37 0 0 chr1 185240791 185240818 -57423535 + (A)n Simple_repeat Simple_repeat 1 27 0 999 198 54 106 chr1 185240830 185240875 -57423478 + L1MC5 LINE L1 7402 7448 -513 2216 195 34 57 chr1 185240875 185241361 -57422992 + MLT2B2 LTR ERVL 1 476 -39 204 40 0 0 chr1 185241361 185241386 -57422967 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 2216 195 34 57 chr1 185241386 185241426 -57422927 + MLT2B2 LTR ERVL 476 515 0 999 198 54 106 chr1 185241426 185241916 -57422437 + L1MC5 LINE L1 7448 7909 -52 2321 71 0 3 chr1 185242006 185242300 -57422053 + AluY SINE Alu 3 295 -16 703 193 106 0 chr1 185244219 185244380 -57419973 - MER5A DNA MER1_type 0 189 12 283 313 107 0 chr1 185244645 185244757 -57419596 - MIR SINE MIR -92 170 47 363 284 203 0 chr1 185244795 185244943 -57419410 + MER5A DNA MER1_type 11 188 -1 2380 67 0 10 chr1 185245216 185245514 -57418839 - AluY SINE Alu -16 295 1 11943 159 16 15 chr1 185246201 185246812 -57417541 + Tigger7 DNA MER2_type 1 610 -1877 1719 102 0 0 chr1 185246812 185247038 -57417315 + AluSg/x SINE Alu 73 298 -14 11943 159 16 15 chr1 185247038 185248458 -57415895 + Tigger7 DNA MER2_type 610 2033 -454 471 268 78 21 chr1 185248467 185248609 -57415744 + MIR SINE MIR 42 191 -71 733 238 71 47 chr1 185249381 185249729 -57414624 - MLT1A1 LTR MaLR -8 449 1 24 77 0 0 chr1 185249910 185249962 -57414391 + AT_rich Low_complexity Low_complexity 1 52 0 560 274 132 14 chr1 185251392 185251611 -57412742 + MIR SINE MIR 18 262 0 1310 205 36 42 chr1 185252107 185252443 -57411910 + L1MA10 LINE L1 5994 6327 -7 1545 244 73 55 chr1 185252480 185253039 -57411314 + MLT1G1 LTR MaLR 1 590 0 181 337 35 77 chr1 185253847 185253996 -57410357 - L2 LINE L2 -9 3304 3161 1332 179 121 16 chr1 185253996 185254303 -57410050 - MER44D DNA MER2_type 0 609 1 181 337 35 77 chr1 185254303 185254322 -57410031 - L2 LINE L2 -152 3161 3143 238 360 128 23 chr1 185254862 185255034 -57409319 - MIR3 SINE MIR 0 208 19 21 0 0 0 chr1 185255053 185255074 -57409279 + AT_rich Low_complexity Low_complexity 1 21 0 195 161 32 16 chr1 185256156 185256218 -57408135 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 1984 215 92 15 chr1 185257728 185258140 -57406213 + MLT1D LTR MaLR 1 455 -50 2173 73 0 13 chr1 185258140 185258442 -57405911 - L1PA13 LINE L1 -1 6162 5865 1984 215 92 15 chr1 185258442 185258498 -57405855 + MLT1D LTR MaLR 455 505 0 22 0 0 0 chr1 185259712 185259734 -57404619 + AT_rich Low_complexity Low_complexity 1 22 0 239 197 171 103 chr1 185260560 185260677 -57403676 + L2 LINE L2 3187 3311 -2 939 244 45 15 chr1 185260735 185261001 -57403352 - MER110 LTR ERV1 -22 469 196 252 185 84 0 chr1 185261002 185261121 -57403232 + (TA)n Simple_repeat Simple_repeat 2 130 0 977 252 90 66 chr1 185261124 185261581 -57402772 - MLT2B1 LTR ERVL -51 469 2 431 168 158 0 chr1 185261581 185261682 -57402671 - MER110 LTR ERV1 -306 185 69 636 232 45 19 chr1 185262198 185262353 -57402000 + MER58B DNA MER1_type 183 341 0 1443 216 80 32 chr1 185263212 185263247 -57401106 + MER63B DNA MER1_type 2 34 -1028 4271 161 29 17 chr1 185263247 185264089 -57400264 - L1MA9 LINE L1 0 6312 5461 1443 216 80 32 chr1 185264089 185264455 -57399898 + MER63B DNA MER1_type 34 422 -14 186 292 77 0 chr1 185266531 185266596 -57397757 + MIR3 SINE MIR 136 205 -3 3856 33 9 4 chr1 185267131 185267905 -57396448 - L1PA5 LINE L1 -472 5683 4910 3316 47 0 110 chr1 185267905 185268396 -57395957 + L1PA5 LINE L1 5696 6149 -5 3805 160 14 21 chr1 185268478 185269178 -57395175 - L1PB4 LINE L1 -12 6144 5450 1105 264 98 39 chr1 185269194 185269682 -57394671 - L1ME3A LINE L1 -11 6159 5643 185 408 7 20 chr1 185271755 185271902 -57392451 - L2 LINE L2 -284 2988 2844 249 327 163 20 chr1 185272254 185272407 -57391946 - L2 LINE L2 -967 2347 2173 1489 212 68 38 chr1 185272790 185273243 -57391110 + MLT1C LTR MaLR 1 467 0 203 260 14 55 chr1 185275115 185275188 -57389165 - L2 LINE L2 -25 3247 3178 201 339 35 43 chr1 185275255 185275370 -57388983 - L2 LINE L2 -211 3061 2948 * 215 296 25 25 chr1 185275369 185275450 -57388903 + MIR SINE MIR 131 211 -51 374 340 48 35 chr1 185275672 185276045 -57388308 + L1M4 LINE L1 4548 4925 -1221 21 36 0 0 chr1 185276333 185276361 -57387992 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr1 185277036 185277076 -57387277 + (CA)n Simple_repeat Simple_repeat 2 41 0 425 317 174 13 chr1 185277600 185277645 -57386708 - MIR SINE MIR -1 261 225 210 118 0 0 chr1 185277645 185277679 -57386674 + (TG)n Simple_repeat Simple_repeat 1 34 0 425 317 174 13 chr1 185277679 185277857 -57386496 - MIR SINE MIR -37 225 2 612 269 64 67 chr1 185278587 185278929 -57385424 - L2 LINE L2 -17 3296 2956 2074 159 71 22 chr1 185279566 185279974 -57384379 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr1 185279990 185280019 -57384334 + AT_rich Low_complexity Low_complexity 1 29 0 311 348 64 34 chr1 185280913 185281117 -57383236 + MIR SINE MIR 19 228 -34 426 256 57 15 chr1 185282114 185282259 -57382094 - MIR SINE MIR -57 205 54 2041 214 33 11 chr1 185282312 185282761 -57381592 - LTR40b LTR ERVL -1 461 3 929 217 11 101 chr1 185284551 185284649 -57379704 - MIR SINE MIR -10 252 147 2261 101 0 25 chr1 185284649 185284966 -57379387 + AluSc SINE Alu 1 309 0 929 217 11 101 chr1 185284966 185285144 -57379209 - MIR SINE MIR -115 147 1 1844 123 91 20 chr1 185285279 185285629 -57378724 - THE1C LTR MaLR 0 375 1 559 270 29 6 chr1 185286310 185286484 -57377869 - MER5B DNA MER1_type 0 178 1 278 236 30 0 chr1 185287138 185287221 -57377132 - MLT1I LTR MaLR -267 142 70 2460 79 0 0 chr1 185287768 185288086 -57376267 + L1PA6 LINE L1 5793 6110 -44 257 0 0 29 chr1 185288086 185288120 -57376233 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 2114 96 30 79 chr1 185288637 185288880 -57375473 + L1MA2 LINE L1 5914 6131 -173 1630 170 96 16 chr1 185288880 185289192 -57375161 - MER1B DNA MER1_type 0 337 1 2114 96 30 79 chr1 185289192 185289354 -57374999 + L1MA2 LINE L1 6131 6299 -5 24 0 0 0 chr1 185289356 185289380 -57374973 + AT_rich Low_complexity Low_complexity 1 24 0 282 308 83 17 chr1 185289798 185289918 -57374435 - MER21B LTR ERV1 -415 448 321 1920 293 61 39 chr1 185291351 185292340 -57372013 - L2 LINE L2 -74 3239 2232 387 300 82 0 chr1 185295039 185295149 -57369204 - L2 LINE L2 0 3272 3154 282 274 29 29 chr1 185295428 185295530 -57368823 - L2 LINE L2 -551 2763 2662 448 269 35 28 chr1 185295548 185295593 -57368760 + MIR SINE MIR 119 162 -100 2009 40 4 0 chr1 185295593 185295841 -57368512 + L1PA4 LINE L1 5905 6153 -2 448 269 35 28 chr1 185295841 185295936 -57368417 + MIR SINE MIR 162 260 -2 193 347 102 36 chr1 185295976 185296201 -57368152 + MIR SINE MIR 7 246 -16 307 295 148 0 chr1 185297078 185297200 -57367153 - MIR3 SINE MIR -22 186 47 196 351 84 30 chr1 185297456 185297587 -57366766 - MIR SINE MIR -97 165 28 363 252 8 61 chr1 185298093 185298224 -57366129 + MLT1K LTR MaLR 463 586 -2 1737 179 14 0 chr1 185298871 185299162 -57365191 - AluSx SINE Alu -17 295 1 611 267 102 90 chr1 185299698 185299953 -57364400 - MLT1I LTR MaLR -120 289 59 566 291 42 5 chr1 185300075 185300264 -57364089 + MLT1J1 LTR MaLR 1 196 -250 553 238 98 0 chr1 185300264 185300407 -57363946 + MLT1J2 LTR MaLR 250 406 -44 600 283 78 26 chr1 185301013 185301243 -57363110 + MIR SINE MIR 7 248 -14 213 400 47 21 chr1 185301262 185301408 -57362945 - MIR SINE MIR -64 144 9 2384 73 3 0 chr1 185302595 185302895 -57361458 + AluY SINE Alu 1 301 -10 2436 274 74 29 chr1 185302901 185305380 -57358973 + L1MA9 LINE L1 17 1911 -4125 687 182 0 45 chr1 185305380 185305512 -57358841 + AluJb SINE Alu 1 126 -186 2571 254 26 18 chr1 185305543 185306445 -57357908 + L1MA9 LINE L1 1897 2805 -3229 * 9546 171 13 10 chr1 185306437 185308000 -57356353 + L1MA3 LINE L1 17 1584 -5981 295 65 0 22 chr1 185308019 185308065 -57356288 - L1M1 LINE L1 -4673 2892 2848 367 64 0 0 chr1 185308072 185308119 -57356234 + L1MA3 LINE L1 2939 2985 -4580 13638 178 26 37 chr1 185308153 185312234 -57352119 + L1MA3 LINE L1 3564 7597 -127 191 196 0 22 chr1 185312351 185312397 -57351956 - MIR SINE MIR -37 225 181 328 274 0 0 chr1 185312413 185312475 -57351878 - MER2 DNA MER2_type 0 345 284 1063 212 0 0 chr1 185312527 185312720 -57351633 - MER2 DNA MER2_type -136 209 17 487 293 7 20 chr1 185312722 185312872 -57351481 - MIR SINE MIR -104 158 11 2174 92 3 23 chr1 185314206 185314510 -57349843 - AluSx SINE Alu -14 298 1 912 128 0 7 chr1 185314669 185314817 -57349536 + L1MA3 LINE L1 6151 6297 -8 3190 202 44 8 chr1 185314841 185315676 -57348677 + L1MA9 LINE L1 2809 3673 -2361 29314 112 12 23 chr1 185315680 185319224 -57345129 + L1PA7 LINE L1 430 3992 -2477 243 0 0 0 chr1 185319224 185319251 -57345102 + (CAA)n Simple_repeat Simple_repeat 3 29 0 29314 112 12 23 chr1 185319251 185321702 -57342651 + L1PA7 LINE L1 3992 6469 0 4030 203 23 8 chr1 185321703 185322601 -57341752 + L1MA9 LINE L1 4041 4952 -1082 941 217 168 53 chr1 185322640 185322962 -57341391 + MLT1A1 LTR MaLR 6 364 -1 5020 154 28 18 chr1 185322968 185323924 -57340429 + L1MA9 LINE L1 5229 6194 -6 24 0 0 0 chr1 185325730 185325754 -57338599 + AT_rich Low_complexity Low_complexity 1 24 0 270 233 41 0 chr1 185325878 185325951 -57338402 + MIR SINE MIR 187 262 0 219 278 218 0 chr1 185325942 185326075 -57338278 - MIR SINE MIR -55 207 46 * 551 310 108 23 chr1 185326082 185326424 -57337929 - MLT1L LTR MaLR -25 590 220 280 307 0 0 chr1 185327311 185327412 -57336941 + L1MC4 LINE L1 6614 6714 -1328 1455 211 113 27 chr1 185327522 185327930 -57336423 - MSTB2 LTR MaLR 0 457 15 1341 147 147 39 chr1 185328457 185328763 -57335590 + MER44D DNA MER2_type 1 609 0 1604 178 72 6 chr1 185328917 185329238 -57335115 + MER2 DNA MER2_type 2 343 -1 1932 265 70 44 chr1 185329468 185330442 -57333911 - L1ME3A LINE L1 -4 6166 5166 185 323 163 45 chr1 185330468 185330799 -57333554 + L2 LINE L2 2149 2518 -796 27 0 0 0 chr1 185332049 185332076 -57332277 + AT_rich Low_complexity Low_complexity 1 27 0 425 211 11 0 chr1 185334044 185334134 -57330219 + MER103 DNA DNA 55 145 -21 558 286 123 47 chr1 185335627 185335928 -57328425 + LTR16C LTR ERVL 71 394 -97 577 186 0 76 chr1 185336034 185336179 -57328174 - MER94 DNA DNA 0 134 1 333 82 0 0 chr1 185337666 185337715 -57326638 + (CA)n Simple_repeat Simple_repeat 1 49 0 304 335 86 41 chr1 185337715 185337953 -57326400 + MLT1J2 LTR MaLR 148 399 -51 1872 114 4 8 chr1 185337987 185338249 -57326104 + AluSx SINE Alu 44 304 -8 276 321 66 28 chr1 185338253 185338465 -57325888 - L1MC/D LINE L1 -2237 5571 5352 37 43 0 14 chr1 185338606 185338641 -57325712 + AT_rich Low_complexity Low_complexity 1 36 -32 1192 145 33 12 chr1 185338641 185338882 -57325471 - L1MA7 LINE L1 -4 6287 6042 37 43 0 14 chr1 185338882 185338915 -57325438 + AT_rich Low_complexity Low_complexity 36 68 0 552 227 233 33 chr1 185339003 185339297 -57325056 - MLT1F LTR MaLR 0 542 142 232 235 59 24 chr1 185339343 185339428 -57324925 - MLT1F LTR MaLR -502 88 1 28 48 0 0 chr1 185339439 185339481 -57324872 + AT_rich Low_complexity Low_complexity 1 42 0 2234 100 0 7 chr1 185339505 185339795 -57324558 - AluSg1 SINE Alu -21 288 1 2320 197 44 26 chr1 185339796 185340340 -57324013 - L1ME1 LINE L1 -32 6134 5581 394 272 12 169 chr1 185340604 185340858 -57323495 - MIR SINE MIR -41 221 8 5768 153 43 1 chr1 185341200 185342433 -57321920 - L1MA6 LINE L1 -741 5559 4280 3768 166 22 4 chr1 185342440 185343132 -57321221 + L1MA6 LINE L1 5571 6274 -26 240 35 0 0 chr1 185343274 185343303 -57321050 + (TA)n Simple_repeat Simple_repeat 1 29 0 2361 62 0 26 chr1 185343303 185343610 -57320743 - AluY SINE Alu -12 299 1 4754 139 101 20 chr1 185344094 185345133 -57319220 - Tigger3b DNA MER2_type 0 1231 1 1592 219 25 36 chr1 185345582 185345943 -57318410 + MLT1A1 LTR MaLR 1 357 -8 375 290 65 8 chr1 185346025 185346149 -57318204 - MIR3 SINE MIR -74 134 4 1421 272 123 38 chr1 185347015 185347894 -57316459 + L2 LINE L2 2349 3313 0 24 0 0 0 chr1 185348242 185348266 -57316087 + AT_rich Low_complexity Low_complexity 1 24 0 537 254 14 7 chr1 185348284 185348426 -57315927 - MER58B DNA MER1_type 0 341 199 2466 92 0 0 chr1 185348659 185348965 -57315388 + AluSx SINE Alu 1 306 -6 201 206 0 0 chr1 185349470 185349504 -57314849 + L3 LINE CR1 433 466 -1111 2093 124 0 0 chr1 185349531 185349821 -57314532 + AluY SINE Alu 1 290 -21 261 0 0 0 chr1 185349824 185349853 -57314500 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr1 185350436 185350467 -57313886 + AT_rich Low_complexity Low_complexity 1 31 0 3142 184 73 157 chr1 185351133 185352576 -57311777 + L1MCa LINE L1 1 1194 -4851 9906 186 66 21 chr1 185353041 185355250 -57309103 - L1MC3 LINE L1 -8 8195 5888 3531 250 41 14 chr1 185355244 185356436 -57307917 - L1MC3 LINE L1 -2449 4115 2892 * 3005 234 71 40 chr1 185356489 185358443 -57305910 - L1MC3 LINE L1 -4467 2121 1 284 228 291 31 chr1 185358619 185358746 -57305607 + MIR SINE MIR 102 261 -1 1972 99 3 87 chr1 185359348 185359660 -57304693 - AluSg SINE Alu -24 286 1 287 216 122 0 chr1 185361057 185361131 -57303222 - MIR3 SINE MIR -25 183 101 651 252 31 59 chr1 185361792 185362014 -57302339 + Charlie2 DNA MER1_type 13 228 -2634 1729 228 162 51 chr1 185362084 185362750 -57301603 + Charlie2 DNA MER1_type 1856 2651 -211 968 130 53 0 chr1 185362750 185362919 -57301434 + L1MA5A LINE L1 6118 6295 -2 1729 228 162 51 chr1 185362919 185363157 -57301196 + Charlie2 DNA MER1_type 2651 2861 -1 197 336 81 34 chr1 185363249 185363398 -57300955 + L2 LINE L2 3135 3290 -23 320 257 27 14 chr1 185363635 185363709 -57300644 - L2 LINE L2 -1 3312 3238 1987 127 25 0 chr1 185364664 185364948 -57299405 - AluSx SINE Alu -21 291 1 369 316 26 17 chr1 185365648 185365765 -57298588 + L2 LINE L2 3180 3297 -16 318 303 91 42 chr1 185365991 185366156 -57298197 - MIR3 SINE MIR -5 203 31 222 91 0 0 chr1 185366354 185366387 -57297966 + (A)n Simple_repeat Simple_repeat 1 33 0 279 65 0 43 chr1 185366789 185366835 -57297518 + L1PA16 LINE L1 6107 6150 -16 234 0 0 0 chr1 185368176 185368202 -57296151 + (TG)n Simple_repeat Simple_repeat 2 27 0 202 220 0 20 chr1 185368280 185368330 -57296023 + GA-rich Low_complexity Low_complexity 2 50 0 242 211 138 46 chr1 185370275 185370384 -57293969 + MER91B DNA MER1_type 17 135 -55 * 382 250 26 26 chr1 185370326 185370442 -57293911 + MIR SINE MIR 91 206 -56 301 241 175 20 chr1 185370539 185370679 -57293674 + MIR SINE MIR 42 210 -52 888 216 0 18 chr1 185370715 185370886 -57293467 + AluJo SINE Alu 115 282 -30 234 0 0 0 chr1 185370890 185370916 -57293437 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 340 370 127 7 chr1 185371056 185371332 -57293021 + L2 LINE L2 2488 2796 -518 251 292 83 17 chr1 185371419 185371539 -57292814 + L2 LINE L2 2935 3062 -210 216 213 200 50 chr1 185371685 185371765 -57292588 + L2 LINE L2 3177 3268 -4 348 24 0 0 chr1 185372800 185372841 -57291512 + (TG)n Simple_repeat Simple_repeat 1 41 0 225 102 0 136 chr1 185372841 185372900 -57291453 + L1MC4 LINE L1 6653 6703 -1339 354 289 0 0 chr1 185372900 185373021 -57291332 + (TA)n Simple_repeat Simple_repeat 1 121 0 1346 115 20 45 chr1 185373778 185374022 -57290331 - L1PA14 LINE L1 -109 6052 5815 292 303 0 0 chr1 185374254 185374320 -57290033 + L2 LINE L2 3207 3272 0 2115 99 0 0 chr1 185374631 185374914 -57289439 - AluY SINE Alu 0 311 29 206 244 81 35 chr1 185375134 185375220 -57289133 - MIR SINE MIR -84 178 89 322 278 128 55 chr1 185377399 185377435 -57286918 - L1ME4a LINE L1 -177 5944 5912 2670 86 11 6 chr1 185377435 185377795 -57286558 + THE1B LTR MaLR 3 364 0 322 278 128 55 chr1 185377795 185378031 -57286322 - L1ME4a LINE L1 -209 5912 5652 2000 156 0 10 chr1 185379001 185379315 -57285038 + AluSx SINE Alu 1 311 -1 466 341 0 6 chr1 185382391 185382570 -57281783 - MARNA DNA Mariner -67 519 342 360 363 109 44 chr1 185382698 185383064 -57281289 - L2 LINE L2 -65 3207 2818 23 0 0 0 chr1 185383083 185383106 -57281247 + AT_rich Low_complexity Low_complexity 1 23 0 381 93 0 0 chr1 185384629 185384683 -57279670 + (CA)n Simple_repeat Simple_repeat 1 54 0 874 183 0 0 chr1 185385052 185385194 -57279159 + AluJo SINE Alu 1 142 -170 337 309 92 13 chr1 185385430 185385734 -57278619 + L1M4 LINE L1 2280 2607 -3539 905 229 19 19 chr1 185385881 185386091 -57278262 + MLT1A2 LTR MaLR 1 210 -164 254 173 39 0 chr1 185386114 185386166 -57278187 + MLT1A2 LTR MaLR 333 386 -4 234 231 77 0 chr1 185386172 185386263 -57278090 + L1M4 LINE L1 2919 3016 -3130 * 4814 119 22 1 chr1 185386251 185386982 -57277371 - L1P LINE L1 -3989 2157 1412 * 8226 111 28 1 chr1 185386978 185388238 -57276115 + L1P LINE L1 2833 4126 -2020 677 168 0 0 chr1 185388240 185388365 -57275988 + L1PA8 LINE L1 2942 3066 -3080 7981 112 10 3 chr1 185388369 185390394 -57273959 + L1PA8 LINE L1 4145 6172 0 265 358 166 0 chr1 185390642 185390835 -57273518 - MIR SINE MIR -17 245 21 208 342 108 8 chr1 185391217 185391337 -57273016 - MER5A DNA MER1_type -56 133 2 24 32 0 0 chr1 185393213 185393244 -57271109 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr1 185393247 185393285 -57271068 + (TA)n Simple_repeat Simple_repeat 1 39 0 426 207 45 89 chr1 185394319 185394498 -57269855 - MLT1D LTR MaLR -311 194 24 283 313 54 18 chr1 185394551 185394663 -57269690 - L2 LINE L2 -1 3312 3197 225 402 19 19 chr1 185394799 185394906 -57269447 - L2 LINE L2 -2 3270 3164 2059 112 3 26 chr1 185395083 185395388 -57268965 - AluSx SINE Alu -14 298 1 183 204 0 0 chr1 185395419 185395468 -57268885 + (TA)n Simple_repeat Simple_repeat 2 50 0 390 301 9 9 chr1 185395900 185396013 -57268340 - MER81 DNA DNA -1 113 1 25 31 0 0 chr1 185397249 185397281 -57267072 + AT_rich Low_complexity Low_complexity 1 32 0 432 37 0 0 chr1 185397920 185397974 -57266379 + (CA)n Simple_repeat Simple_repeat 2 55 0 459 332 113 0 chr1 185398660 185398970 -57265383 + L1M4 LINE L1 2147 2491 -3655 2357 87 0 7 chr1 185399454 185399754 -57264599 + AluY SINE Alu 1 298 -13 198 103 0 0 chr1 185400017 185400046 -57264307 + (A)n Simple_repeat Simple_repeat 1 29 0 417 205 0 0 chr1 185400411 185400523 -57263830 + (TA)n Simple_repeat Simple_repeat 2 113 0 1058 77 0 0 chr1 185400853 185400983 -57263370 - AluSc SINE Alu -179 130 1 282 360 66 0 chr1 185401629 185401840 -57262513 - L1MC/D LINE L1 -2001 5807 5583 1033 207 67 0 chr1 185401955 185402163 -57262190 + MER58A DNA MER1_type 2 223 -1 2478 193 38 8 chr1 185402221 185402693 -57261660 - MER66B LTR ERV1 0 486 1 1897 247 20 11 chr1 185404425 185404870 -57259483 + LTR40c LTR ERVL 5 453 -12 21 0 0 0 chr1 185405014 185405035 -57259318 + AT_rich Low_complexity Low_complexity 1 21 0 383 236 51 107 chr1 185405615 185405674 -57258679 - L2 LINE L2 -2 3311 3250 850 246 43 0 chr1 185405674 185405885 -57258468 + MER58A DNA MER1_type 1 220 -4 383 236 51 107 chr1 185405885 185406041 -57258312 - L2 LINE L2 -63 3250 3108 468 51 0 0 chr1 185406362 185406421 -57257932 + (CA)n Simple_repeat Simple_repeat 2 60 0 1964 123 87 0 chr1 185406429 185406761 -57257592 - MER46B DNA MER2_type 0 236 1 298 369 44 12 chr1 185406800 185406960 -57257393 - MIR3 SINE MIR -10 198 34 309 269 45 0 chr1 185407034 185407101 -57257252 + MIR SINE MIR 39 108 -100 1952 174 0 0 chr1 185407230 185407541 -57256812 + AluSx SINE Alu 1 311 -1 557 296 175 5 chr1 185407541 185407747 -57256606 + MIR SINE MIR 22 262 0 3497 95 11 21 chr1 185408041 185408568 -57255785 + L1PA13 LINE L1 5638 6159 -4 501 279 20 20 chr1 185411170 185411317 -57253036 + MER5B DNA MER1_type 32 178 0 243 237 40 40 chr1 185412232 185412308 -57252045 - MER5B DNA MER1_type 0 178 103 * 493 306 51 28 chr1 185412307 185412523 -57251830 + MIR SINE MIR 40 260 -2 369 93 0 0 chr1 185412546 185412600 -57251753 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 448 273 162 83 chr1 185415947 185416342 -57248011 + MLT1J1 LTR MaLR 1 426 -20 824 311 72 36 chr1 185416579 185417193 -57247160 + L1MEd LINE L1 90 725 -5394 1157 198 131 30 chr1 185417307 185417636 -57246717 - MLT1A2 LTR MaLR -12 362 1 466 293 62 39 chr1 185417710 185417918 -57246435 + L1MEd LINE L1 916 1128 -4991 1016 129 7 0 chr1 185417923 185418062 -57246291 + AluJb SINE Alu 144 283 -29 369 300 209 9 chr1 185418149 185418359 -57245994 + L1MEd LINE L1 1240 1491 -4819 1923 205 88 30 chr1 185418388 185419253 -57245100 + L1MB2 LINE L1 4854 5771 -400 1183 215 52 0 chr1 185419353 185419586 -57244767 - Tigger7 DNA MER2_type -2242 245 1 1125 133 14 62 chr1 185419586 185419796 -57244557 + L1MB2 LINE L1 5905 6104 -67 1574 101 29 142 chr1 185419916 185420261 -57244092 - MER7A DNA MER2_type -42 304 1 21 57 0 0 chr1 185420383 185420418 -57243935 + AT_rich Low_complexity Low_complexity 1 35 0 436 263 149 14 chr1 185420693 185420974 -57243379 - L1ME3A LINE L1 -329 5841 5523 1594 152 99 0 chr1 185421237 185421500 -57242853 + AluSq SINE Alu 1 289 -24 3817 108 22 35 chr1 185421530 185421634 -57242719 + L1MA3 LINE L1 5684 5788 -517 1674 201 0 6 chr1 185421634 185421948 -57242405 + AluJb SINE Alu 1 312 0 3817 108 22 35 chr1 185421948 185422473 -57241880 + L1MA3 LINE L1 5788 6305 0 5516 132 31 10 chr1 185424369 185425324 -57239029 - L1PA15 LINE L1 -6 6159 5186 2205 118 3 3 chr1 185425324 185425628 -57238725 - AluSx SINE Alu -2 310 7 5516 132 31 10 chr1 185425628 185425714 -57238639 - L1PA15 LINE L1 -979 5186 5103 2095 328 89 16 chr1 185425736 185426875 -57237478 + L2 LINE L2 1843 3105 -208 1497 195 38 4 chr1 185426875 185427142 -57237211 + AluSx SINE Alu 1 276 -36 2095 328 89 16 chr1 185427142 185427348 -57237005 + L2 LINE L2 3105 3295 -18 309 227 180 40 chr1 185427883 185428033 -57236320 + MIR SINE MIR 31 201 -61 903 244 50 13 chr1 185428404 185428642 -57235711 - MIR SINE MIR 0 262 16 291 297 48 37 chr1 185428768 185428896 -57235457 - MIR3 SINE MIR -27 181 49 225 0 0 0 chr1 185429626 185429651 -57234702 + (TG)n Simple_repeat Simple_repeat 2 26 0 1126 214 70 8 chr1 185430205 185430448 -57233905 + MLT2B3 LTR ERVL 1 258 -296 879 172 35 40 chr1 185430415 185430613 -57233740 + MSTD LTR MaLR 200 396 0 * 769 250 124 54 chr1 185431121 185431509 -57232844 - MER57B LTR ERV1 -10 424 10 214 300 43 0 chr1 185433681 185433751 -57230602 - MIR SINE MIR -26 236 164 183 222 0 0 chr1 185433777 185433822 -57230531 - L2 LINE L2 -2 3311 3267 374 170 61 12 chr1 185433837 185434002 -57230351 + (TA)n Simple_repeat Simple_repeat 1 173 0 225 301 108 0 chr1 185434226 185434319 -57230034 - MIR SINE MIR -101 161 59 2161 109 0 17 chr1 185435369 185435662 -57228691 + AluSg SINE Alu 1 288 -22 243 0 0 0 chr1 185436131 185436158 -57228195 + (CA)n Simple_repeat Simple_repeat 2 28 0 259 341 93 0 chr1 185436163 185436292 -57228061 + L2 LINE L2 2919 3059 -213 1838 162 37 20 chr1 185437510 185437861 -57226492 + MLT1A1 LTR MaLR 2 358 -7 282 301 0 14 chr1 185439361 185439434 -57224919 + MER5A DNA MER1_type 116 187 -2 2024 206 20 26 chr1 185441275 185441731 -57222622 + MLT1C LTR MaLR 6 458 -9 826 230 7 0 chr1 185441727 185441879 -57222474 + MER58B DNA MER1_type 189 341 0 * 1440 197 138 29 chr1 185442107 185442686 -57221667 - MER114 LTR ERV 0 648 7 266 324 0 0 chr1 185442947 185443021 -57221332 + MIR3 SINE MIR 122 195 -13 21 36 0 0 chr1 185443335 185443363 -57220990 + AT_rich Low_complexity Low_complexity 1 28 0 184 208 21 0 chr1 185443728 185443776 -57220577 + MER5C DNA MER1_type 118 166 -158 1788 286 88 0 chr1 185443917 185444427 -57219926 - MLT1H1 LTR MaLR 0 555 1 22409 102 13 5 chr1 185444582 185448808 -57215545 + L1PA8 LINE L1 2900 7572 -19 365 298 46 25 chr1 185448990 185449228 -57215125 - L1MEd LINE L1 -2240 3889 3647 1230 159 42 9 chr1 185449779 185450181 -57214172 + LTR54 LTR ERV1 13 510 0 1808 130 15 4 chr1 185450414 185450683 -57213670 - THE1C LTR MaLR 0 375 104 967 236 65 25 chr1 185450688 185450933 -57213420 + L1MC4 LINE L1 6700 6934 -1108 635 281 55 6 chr1 185450933 185451097 -57213256 - MER96 DNA MER1_type -1 174 3 967 236 65 25 chr1 185451097 185451406 -57212947 + L1MC4 LINE L1 6934 7446 -596 1438 166 153 10 chr1 185451451 185451746 -57212607 - MER1B DNA MER1_type 0 337 1 183 42 0 0 chr1 185451785 185451809 -57212544 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 352 248 127 74 chr1 185451872 185452385 -57211968 - L1MEd LINE L1 -2758 3371 2832 279 247 74 12 chr1 185452747 185452828 -57211525 - MLT1J LTR MaLR -423 88 3 796 274 75 26 chr1 185452839 185453335 -57211018 - L1MEd LINE L1 -3311 2818 2299 2043 136 69 17 chr1 185453559 185453905 -57210448 - THE1B LTR MaLR 0 364 1 260 273 81 10 chr1 185454523 185454622 -57209731 - L1MEd LINE L1 -4870 1249 1144 412 292 81 69 chr1 185454648 185455069 -57209284 - L1MEd LINE L1 -5122 997 572 31 0 0 0 chr1 185455849 185455880 -57208473 + AT_rich Low_complexity Low_complexity 1 31 0 434 319 146 23 chr1 185456395 185456696 -57207657 + L2 LINE L2 2967 3304 -9 250 343 39 39 chr1 185456860 185457241 -57207112 - HAL1b LINE L1 -627 1658 330 381 250 44 25 chr1 185459344 185459504 -57204849 + L1MEd LINE L1 3 165 -5954 2101 136 0 0 chr1 185459693 185459988 -57204365 - AluSx SINE Alu -17 295 1 1797 115 96 0 chr1 185460629 185460889 -57203464 - AluSx SINE Alu -27 285 1 602 240 27 23 chr1 185460970 185461206 -57203147 + L1MA10 LINE L1 5943 6334 0 287 222 54 127 chr1 185461198 185461568 -57202785 + L1MC5 LINE L1 7142 7484 -477 * 407 267 31 105 chr1 185462273 185462464 -57201889 - MIR SINE MIR 0 262 86 298 265 98 10 chr1 185462738 185462840 -57201513 + MIR SINE MIR 37 147 -115 2066 187 33 29 chr1 185464574 185465118 -57199235 - MLT2A2 LTR ERVL -12 542 1 187 342 25 38 chr1 185465118 185465197 -57199156 - MER5A DNA MER1_type -110 79 2 501 260 77 32 chr1 185466385 185466631 -57197722 + HAL1b LINE L1 227 483 -865 * 1311 188 269 0 chr1 185466626 185466961 -57197392 + L1P LINE L1 4530 4954 -1192 1071 242 39 52 chr1 185467542 185468134 -57196219 - MER21B LTR ERV1 -188 675 19 340 198 83 31 chr1 185468127 185468223 -57196130 - MER21B LTR ERV1 -751 112 12 * 671 236 156 0 chr1 185469069 185469268 -57195085 - MIR SINE MIR -30 232 3 3387 205 55 1 chr1 185471428 185472198 -57192155 - L1MA9 LINE L1 -783 5363 4553 1621 124 51 0 chr1 185472197 185472471 -57191882 + L1MA9 LINE L1 5360 5647 -665 * 1236 204 134 0 chr1 185472471 185472740 -57191613 - MER7A DNA MER2_type -1 345 43 551 212 40 40 chr1 185472743 185472894 -57191459 + L1MA9 LINE L1 5644 5794 -518 850 153 179 31 chr1 185473175 185473216 -57191137 + L1MA9 LINE L1 5786 5820 -492 2556 74 0 0 chr1 185473216 185473527 -57190826 + AluY SINE Alu 1 311 0 850 153 179 31 chr1 185473527 185473708 -57190645 + L1MA9 LINE L1 5820 6041 -271 785 94 26 0 chr1 185473715 185473832 -57190521 - L1P4 LINE L1 -444 5724 5605 2151 110 94 3 chr1 185473835 185474198 -57190155 + L1PA13 LINE L1 5765 6160 -3 425 171 196 19 chr1 185474204 185474362 -57189991 + L1MA9 LINE L1 6026 6211 -101 562 259 213 9 chr1 185475640 185475837 -57188516 + MER93b LTR ERV1 3 243 -130 407 176 54 0 chr1 185475837 185475911 -57188442 + Tigger7 DNA MER2_type 1 78 -627 * 975 157 112 22 chr1 185475910 185476133 -57188220 + Tigger7 DNA MER2_type 2345 2587 0 438 242 62 16 chr1 185476133 185476257 -57188096 + MER93b LTR ERV1 239 368 -5 339 331 33 33 chr1 185476670 185476851 -57187502 - MLT1K LTR MaLR -175 413 233 969 170 30 5 chr1 185477109 185477309 -57187044 - L1MB8 LINE L1 0 6178 5974 1547 154 64 59 chr1 185477336 185477725 -57186628 - L1MA10 LINE L1 -29 6305 5915 226 257 14 0 chr1 185478820 185478890 -57185463 + (TTATA)n Simple_repeat Simple_repeat 3 73 0 506 157 0 0 chr1 185479704 185479787 -57184566 + MER58B DNA MER1_type 257 339 -2 229 269 0 0 chr1 185480408 185480460 -57183893 + CT-rich Low_complexity Low_complexity 3 54 0 2157 127 36 30 chr1 185480551 185480913 -57183440 - THE1B LTR MaLR 0 364 1 188 265 0 0 chr1 185482281 185482330 -57182023 + L2 LINE L2 3264 3312 -1 274 354 68 6 chr1 185482449 185482610 -57181743 - MIR SINE MIR 0 262 92 461 313 0 8 chr1 185482641 185482769 -57181584 + L2 LINE L2 3187 3313 0 374 198 10 83 chr1 185482786 185482882 -57181471 + L2 LINE L2 1165 1253 -2061 552 257 188 10 chr1 185482912 185483114 -57181239 - L2 LINE L2 -1093 2221 1984 228 268 98 27 chr1 185483122 185483234 -57181119 - LTR16A1 LTR ERVL -14 443 324 1027 267 25 66 chr1 185483562 185484004 -57180349 + L2 LINE L2 415 838 -2476 2017 210 149 39 chr1 185484004 185484595 -57179758 - MLT2F LTR ERVL 0 663 8 1380 255 66 62 chr1 185484601 185485165 -57179188 + L2 LINE L2 833 1398 -1916 503 239 0 8 chr1 185485165 185485282 -57179071 - MLT1H LTR MaLR 0 549 434 511 249 110 22 chr1 185485393 185485576 -57178777 - MLT1H LTR MaLR -307 242 1 921 240 18 31 chr1 185485774 185485999 -57178354 + MER58A DNA MER1_type 3 224 0 616 312 11 11 chr1 185486356 185486542 -57177811 - MER5A DNA MER1_type -3 186 1 2205 104 3 7 chr1 185486754 185487052 -57177301 + AluSx SINE Alu 1 297 -15 25 31 0 0 chr1 185487104 185487136 -57177217 + AT_rich Low_complexity Low_complexity 1 32 0 391 302 93 49 chr1 185488262 185488467 -57175886 - MIR SINE MIR -10 252 39 471 225 11 0 chr1 185488917 185489006 -57175347 + MER81 DNA DNA 3 92 -22 1224 204 25 107 chr1 185489016 185489408 -57174945 + MLT1A1 LTR MaLR 1 360 -5 2520 57 0 10 chr1 185490896 185491210 -57173143 + AluY SINE Alu 1 311 0 643 293 48 44 chr1 185491383 185491632 -57172721 - MIR SINE MIR 0 262 13 458 209 29 0 chr1 185491707 185491812 -57172541 + L1ME3A LINE L1 5817 5924 -246 206 130 27 62 chr1 185491829 185491975 -57172378 + (TA)n Simple_repeat Simple_repeat 2 142 0 934 208 50 23 chr1 185491975 185492125 -57172228 + L1ME3A LINE L1 5899 6060 -110 270 0 0 0 chr1 185492125 185492155 -57172198 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 934 208 50 23 chr1 185492155 185492264 -57172089 + L1ME3A LINE L1 6060 6165 -5 2356 102 0 3 chr1 185492325 185492639 -57171714 - AluSq SINE Alu 0 313 1 30 0 0 0 chr1 185497199 185497229 -57167124 + AT_rich Low_complexity Low_complexity 1 30 0 625 297 81 9 chr1 185497235 185497457 -57166896 + MIR SINE MIR 2 239 -23 24 0 0 0 chr1 185497467 185497491 -57166862 + AT_rich Low_complexity Low_complexity 1 24 0 724 238 60 0 chr1 185498220 185498388 -57165965 - MER45A DNA AcHobo 0 178 1 10985 29 2 0 chr1 185499059 185501137 -57163216 + L1PA3 LINE L1 4074 6154 -1 1741 215 39 15 chr1 185501583 185502048 -57162305 + Charlie1 DNA MER1_type 2149 2624 -137 24 0 0 0 chr1 185502048 185502072 -57162281 + AT_rich Low_complexity Low_complexity 1 24 0 3775 202 9 11 chr1 185502101 185502800 -57161553 - ERVL-B2 LTR ERVL -3553 2211 1515 442 145 36 12 chr1 185502800 185502883 -57161470 - MSTD LTR MaLR 0 396 312 459 169 37 32 chr1 185502983 185503096 -57161257 - MSTD LTR MaLR -257 117 1 5909 230 69 50 chr1 185503101 185504789 -57159564 - MSTD-int LTR MaLR -13 1722 2 970 215 153 45 chr1 185504791 185504842 -57159511 - MSTD LTR MaLR 0 396 352 252 0 0 0 chr1 185504842 185504870 -57159483 + (TA)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr1 185504869 185504896 -57159457 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 970 215 153 45 chr1 185504870 185505198 -57159155 - MSTD LTR MaLR -44 352 5 6992 204 62 21 chr1 185505198 185506651 -57157702 - ERVL-B2 LTR ERVL -4249 1515 4 707 190 177 6 chr1 185506654 185506906 -57157447 - MLT2B2 LTR ERVL 0 515 172 827 135 0 0 chr1 185506914 185507047 -57157306 - MLT2B1 LTR ERVL -387 133 1 566 266 114 16 chr1 185507103 185507287 -57157066 + MIR SINE MIR 49 250 -12 3447 144 101 2 chr1 185507398 185508371 -57155982 + L1M1 LINE L1 1150 2271 -5294 266 309 21 21 chr1 185509056 185509153 -57155200 + MARNA DNA Mariner 75 171 -415 450 332 31 36 chr1 185509388 185509581 -57154772 - MIR3 SINE MIR -9 199 8 1141 314 224 28 chr1 185510738 185513301 -57151052 + L2 LINE L2 207 3312 -1 1143 106 29 34 chr1 185513472 185513679 -57150674 - L1MA8 LINE L1 -2 6289 6084 288 143 20 0 chr1 185513807 185513856 -57150497 - MIR SINE MIR -2 260 211 362 333 48 11 chr1 185515262 185515448 -57148905 + LTR16C LTR ERVL 299 491 0 22 35 0 0 chr1 185515523 185515552 -57148801 + AT_rich Low_complexity Low_complexity 1 29 0 464 235 22 59 chr1 185515743 185515879 -57148474 + LTR16C LTR ERVL 87 217 -274 804 87 47 6 chr1 185515914 185516086 -57148267 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 412 60 67 60 chr1 185516097 185516231 -57148122 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 777 330 28 10 chr1 185516236 185516524 -57147829 + LTR16C LTR ERVL 199 491 0 1329 227 102 13 chr1 185518867 185519251 -57145102 + MER47B DNA MER2_type 1 418 0 1536 172 5 137 chr1 185519390 185519791 -57144562 + MER7A DNA MER2_type 1 346 0 487 16 0 16 chr1 185520142 185520204 -57144149 + L1P LINE L1 3947 4007 -2139 1923 108 13 67 chr1 185520316 185520688 -57143665 + L1M1 LINE L1 2340 2691 -4874 2886 113 29 0 chr1 185521002 185521417 -57142936 - MSTA LTR MaLR -1 427 1 25 0 0 0 chr1 185522058 185522083 -57142270 + AT_rich Low_complexity Low_complexity 1 25 0 260 196 22 0 chr1 185522154 185522200 -57142153 + MER5A DNA MER1_type 58 104 -85 494 232 14 133 chr1 185522311 185522522 -57141831 - MLT1I LTR MaLR -2 407 222 1495 130 6 118 chr1 185522725 185522976 -57141377 - L1MA10 LINE L1 0 6334 6056 1957 124 139 3 chr1 185522976 185523306 -57141047 + THE1C LTR MaLR 1 375 0 9796 108 48 30 chr1 185523306 185524859 -57139494 + THE1C-int LTR MaLR 1 1580 0 2588 110 5 3 chr1 185524860 185525233 -57139120 + THE1C LTR MaLR 2 375 0 1495 130 6 118 chr1 185525233 185525266 -57139087 - L1MA10 LINE L1 -277 6057 6089 2925 111 92 6 chr1 185525266 185525744 -57138609 + LTR44 LTR ERV1 1 519 0 1495 130 6 118 chr1 185525744 185525802 -57138551 - L1MA10 LINE L1 -244 6090 6027 712 284 115 47 chr1 185525833 185526234 -57138119 - LTR16C LTR ERVL -2 489 62 251 315 22 11 chr1 185526452 185526544 -57137809 + MER117 DNA MER1_type 16 108 -89 12130 60 0 6 chr1 185526985 185528587 -57135766 + L1P LINE L1 2520 4111 -2035 1505 122 60 129 chr1 185529713 185530116 -57134237 + THE1C LTR MaLR 1 375 0 1136 207 4 20 chr1 185530142 185530373 -57133980 + AluJo SINE Alu 71 299 -13 1485 94 10 0 chr1 185530373 185530565 -57133788 + AluSg SINE Alu 1 194 -116 1136 207 4 20 chr1 185530565 185530579 -57133774 + AluJo SINE Alu 299 312 0 1665 230 109 20 chr1 185530584 185531079 -57133274 + MLT1G LTR MaLR 52 590 0 385 293 73 27 chr1 185531430 185531520 -57132833 - MER5A DNA MER1_type -12 177 75 2061 124 0 3 chr1 185531520 185531843 -57132510 - AluSx SINE Alu 0 322 1 385 293 73 27 chr1 185531843 185531901 -57132452 - MER5A DNA MER1_type -114 75 21 523 283 102 80 chr1 185532556 185532722 -57131631 + HAL1 LINE L1 9 170 -2337 2107 137 0 6 chr1 185532722 185533036 -57131317 - AluSx SINE Alu 0 312 1 523 283 102 80 chr1 185533036 185533406 -57130947 + HAL1 LINE L1 170 557 -1950 596 253 102 54 chr1 185533436 185533934 -57130419 + HAL1 LINE L1 867 1388 -1119 1419 264 118 22 chr1 185534048 185534319 -57130034 + HAL1 LINE L1 1637 1881 -626 357 24 0 0 chr1 185534319 185534361 -57129992 + (CA)n Simple_repeat Simple_repeat 1 42 0 1419 264 118 22 chr1 185534361 185534736 -57129617 + HAL1 LINE L1 1881 2345 -162 249 259 168 23 chr1 185534737 185534868 -57129485 - LTR16C LTR ERVL -1 490 341 2148 133 3 0 chr1 185535056 185535365 -57128988 + AluSg SINE Alu 1 310 0 5322 220 70 15 chr1 185535965 185537343 -57127010 - Charlie1a DNA MER1_type 0 1455 2 183 408 25 8 chr1 185537522 185537642 -57126711 + MIR SINE MIR 56 177 -85 628 216 22 93 chr1 185537650 185537854 -57126499 + MER5A DNA MER1_type 2 189 0 1977 164 3 0 chr1 185539231 185539536 -57124817 + AluJb SINE Alu 1 306 -6 419 336 114 28 chr1 185539952 185540390 -57123963 - L2 LINE L2 -46 3267 2790 332 305 204 34 chr1 185540390 185540856 -57123497 - L2 LINE L2 -1348 1966 1422 571 247 32 19 chr1 185542145 185542303 -57122050 + L1ME3A LINE L1 5417 5576 -588 824 243 29 29 chr1 185542323 185542533 -57121820 + MER63A DNA MER1_type 1 210 0 1516 253 121 6 chr1 185542538 185543044 -57121309 + L1ME3A LINE L1 5598 6161 -9 408 311 86 0 chr1 185543161 185543312 -57121041 + MIR SINE MIR 61 224 -38 * 1073 300 73 31 chr1 185543310 185543946 -57120407 + L2 LINE L2 2656 3313 0 341 336 55 0 chr1 185546132 185546278 -57118075 + MIR SINE MIR 4 157 -105 460 228 66 15 chr1 185546484 185546620 -57117733 - MIR SINE MIR -77 185 43 2340 172 26 45 chr1 185546715 185547245 -57117108 + Charlie1b DNA MER1_type 1 520 -3 2833 161 16 10 chr1 185547786 185548277 -57116076 + LTR42 LTR ERVL 1 494 -1 1410 208 91 60 chr1 185548414 185548451 -57115902 - MLT2B1 LTR ERVL -6 514 480 674 87 10 0 chr1 185548451 185548554 -57115799 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 1410 208 91 60 chr1 185548554 185548856 -57115497 - MLT2B1 LTR ERVL -40 480 200 1893 110 24 10 chr1 185548856 185549146 -57115207 + AluSx SINE Alu 3 296 -16 1410 208 91 60 chr1 185549146 185549353 -57115000 - MLT2B1 LTR ERVL -320 200 1 924 219 115 33 chr1 185550249 185550731 -57113622 + L1MA4 LINE L1 5588 6178 -2 22 35 0 0 chr1 185550805 185550834 -57113519 + AT_rich Low_complexity Low_complexity 1 29 0 1833 182 32 84 chr1 185551665 185552198 -57112155 - MLT1D LTR MaLR 0 505 1 797 246 92 83 chr1 185552315 185552770 -57111583 + MLT1H1 LTR MaLR 3 461 -81 299 304 109 14 chr1 185553231 185553369 -57110984 - L2 LINE L2 0 3272 3122 1094 186 114 150 chr1 185555319 185555903 -57108450 - MLT1F1 LTR MaLR 0 567 3 34 0 0 0 chr1 185556363 185556397 -57107956 + AT_rich Low_complexity Low_complexity 1 34 0 240 226 0 16 chr1 185556419 185556481 -57107872 - MIR SINE MIR 0 262 202 180 77 0 0 chr1 185557373 185557399 -57106954 + (TG)n Simple_repeat Simple_repeat 1 26 0 236 87 0 0 chr1 185557508 185557554 -57106799 - LTR66 LTR ERVL -171 439 394 302 159 32 0 chr1 185557559 185557622 -57106731 + (TATG)n Simple_repeat Simple_repeat 2 66 0 2776 223 7 5 chr1 185559434 185559995 -57104358 - MER68 LTR ERV1 0 562 1 525 302 17 0 chr1 185560115 185560287 -57104066 + L1ME1 LINE L1 5988 6162 -4 1458 190 0 99 chr1 185560541 185560836 -57103517 - MER89 LTR ERV1 0 559 275 3387 77 11 9 chr1 185560836 185561000 -57103353 + LTR22A LTR ERVK 1 163 -295 2272 33 7 4 chr1 185561000 185561273 -57103080 - AluY SINE Alu -1 310 37 3387 77 11 9 chr1 185561273 185561565 -57102788 + LTR22A LTR ERVK 163 458 0 1458 190 0 99 chr1 185561565 185561814 -57102539 - MER89 LTR ERV1 -284 275 2 480 299 75 5 chr1 185562245 185562432 -57101921 - MIR SINE MIR -55 207 8 29 0 0 0 chr1 185564420 185564449 -57099904 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 185564568 185564596 -57099757 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 185565330 185565353 -57099000 + AT_rich Low_complexity Low_complexity 1 23 0 335 268 12 0 chr1 185566885 185566967 -57097386 + L1MC/D LINE L1 5719 5801 -2007 808 287 81 19 chr1 185566975 185567296 -57097057 + L1MC/D LINE L1 100 440 -5956 1417 186 28 65 chr1 185567296 185567550 -57096803 + L1MC/D LINE L1 3807 4069 -2146 1636 189 7 0 chr1 185567550 185567831 -57096522 + AluJo SINE Alu 1 283 -29 1417 186 28 65 chr1 185567831 185568130 -57096223 + L1MC/D LINE L1 4069 4453 -1762 1336 127 96 35 chr1 185568123 185568383 -57095970 + THE1-int LTR MaLR 512 787 -793 * 1013 131 131 19 chr1 185568390 185568604 -57095749 + MSTA LTR MaLR 191 428 0 783 180 6 0 chr1 185568604 185568765 -57095588 + L1MA7 LINE L1 4675 4836 -1310 466 220 20 0 chr1 185568766 185568866 -57095487 + MLT2A2 LTR ERVL 154 255 -198 2678 169 20 1 chr1 185568866 185569489 -57094864 + L1MA7 LINE L1 4842 5470 -749 1020 134 43 91 chr1 185569558 185569811 -57094542 + L1MA7 LINE L1 5989 6229 -62 285 232 0 0 chr1 185569816 185569885 -57094468 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 2058 144 0 0 chr1 185569886 185570178 -57094175 - AluSx SINE Alu -20 292 1 794 198 20 10 chr1 185570201 185570398 -57093955 + L1MC/D LINE L1 4549 4747 -1468 1337 228 23 18 chr1 185570402 185570788 -57093565 + L1MC/D LINE L1 4686 5073 -1142 1634 161 3 71 chr1 185570788 185570932 -57093421 + AluJo SINE Alu 6 117 -195 7635 22 3 0 chr1 185570932 185572311 -57092042 + L1PA3 LINE L1 4774 6155 0 1634 161 3 71 chr1 185572311 185572490 -57091863 + AluJo SINE Alu 117 307 -5 2239 120 3 0 chr1 185572492 185572792 -57091561 + AluSx SINE Alu 1 301 -11 1161 266 5 5 chr1 185572792 185573160 -57091193 + L1MC/D LINE L1 5105 5472 -743 1981 171 31 48 chr1 185573165 185573738 -57090615 + MLT2A2 LTR ERVL 1 554 0 21616 101 18 5 chr1 185573738 185575336 -57089017 + HERVL-A2 LTR ERVL 1 1577 -4077 1889 88 16 4 chr1 185575336 185575739 -57088614 - AluY SINE Alu 0 435 30 21616 101 18 5 chr1 185575739 185577962 -57086391 + HERVL-A2 LTR ERVL 1577 3918 -1736 2255 135 41 11 chr1 185577969 185578332 -57086021 - THE1C LTR MaLR -1 374 1 8144 136 37 1 chr1 185578332 185579625 -57084728 - THE1C-int LTR MaLR 0 1580 242 275 182 15 15 chr1 185579621 185579687 -57084666 - THE1C-int LTR MaLR -1514 66 1 * 890 87 8 0 chr1 185579687 185579814 -57084539 - THE1C LTR MaLR 0 375 248 11571 92 30 0 chr1 185579816 185581476 -57082877 + HERVL-A2 LTR ERVL 3945 5654 0 1927 173 39 35 chr1 185581476 185582025 -57082328 + MLT2A2 LTR ERVL 1 554 0 1431 144 8 0 chr1 185582028 185582278 -57082075 + L1MC/D LINE L1 5476 5727 -675 326 160 0 13 chr1 185582278 185582353 -57082000 + GA-rich Low_complexity Low_complexity 3 76 0 400 246 109 0 chr1 185582491 185582629 -57081724 + L1MA10 LINE L1 6182 6334 0 385 88 0 0 chr1 185582862 185582919 -57081434 - L1MA1 LINE L1 0 6302 6246 1130 206 11 4 chr1 185582919 185583186 -57081167 + L1ME LINE L1 5350 5618 -548 1088 202 36 45 chr1 185583199 185583530 -57080823 - L1M4 LINE L1 -996 5150 4823 1947 148 4 0 chr1 185583865 185584143 -57080210 + AluSx SINE Alu 1 279 -33 25 0 0 0 chr1 185584213 185584238 -57080115 + AT_rich Low_complexity Low_complexity 1 25 0 206 299 111 8 chr1 185585126 185585243 -57079110 + L2 LINE L2 1850 1978 -1336 378 282 74 20 chr1 185585397 185585546 -57078807 - MIR SINE MIR -36 226 70 4828 160 14 29 chr1 185586517 185587017 -57077336 + L1MA8 LINE L1 4642 5148 -1143 1563 201 0 7 chr1 185587017 185587305 -57077048 + AluJo SINE Alu 1 286 -26 4828 160 14 29 chr1 185587305 185588416 -57075937 + L1MA8 LINE L1 5148 6229 -62 1698 144 5 115 chr1 185588416 185588806 -57075547 - MER7A DNA MER2_type -1 345 1 4828 160 14 29 chr1 185588806 185588847 -57075506 + L1MA8 LINE L1 6229 6269 -22 336 190 170 10 chr1 185589318 185589418 -57074935 + MLT1E LTR MaLR 51 166 -427 271 114 2 0 chr1 185589387 185589445 -57074908 + MLT1E LTR MaLR 108 147 -446 * 2362 155 14 37 chr1 185589507 185589940 -57074413 - LTR3 LTR ERVK -9 423 1 808 212 48 91 chr1 185589982 185590336 -57074017 + MLT1E LTR MaLR 309 593 0 313 216 21 52 chr1 185590541 185590638 -57073715 + L1 LINE L1 3692 3785 -2361 2144 182 29 71 chr1 185590640 185591265 -57073088 + L1M4 LINE L1 2575 3171 -2975 2212 70 0 21 chr1 185591265 185591601 -57072752 + AluY SINE Alu 1 330 0 2144 182 29 71 chr1 185591601 185591665 -57072688 + L1M4 LINE L1 3171 3236 -2910 241 173 0 19 chr1 185591967 185592019 -57072334 + MER21B LTR ERV1 260 310 -553 * 713 257 25 38 chr1 185592004 185592241 -57072112 + MER77 LTR ERV1 295 528 -77 6962 149 28 3 chr1 185592241 185593448 -57070905 + Tigger1 DNA MER2_type 1 1237 -1181 2672 123 39 2 chr1 185593436 185594081 -57070272 + Tigger1 DNA MER2_type 1697 2414 -4 * 350 310 39 69 chr1 185594094 185594297 -57070056 + MER21B LTR ERV1 505 780 -151 529 241 129 18 chr1 185594298 185594468 -57069885 - MIR SINE MIR -71 191 3 2528 74 0 0 chr1 185594521 185594830 -57069523 - AluSc SINE Alu 0 309 1 1090 276 31 9 chr1 185596256 185596582 -57067771 + MLT1I LTR MaLR 63 395 -14 1261 205 20 61 chr1 185598194 185598487 -57065866 + MLT1F LTR MaLR 3 283 -259 273 124 41 15 chr1 185598492 185598558 -57065795 + MLT1E3 LTR MaLR 473 624 0 22 0 0 0 chr1 185598803 185598825 -57065528 + AT_rich Low_complexity Low_complexity 1 22 0 186 171 0 0 chr1 185599408 185599449 -57064904 + T-rich Low_complexity Low_complexity 1 41 0 3400 116 9 35 chr1 185599451 185600018 -57064335 - L1PB1 LINE L1 -2 6149 5598 436 297 203 24 chr1 185600312 185600602 -57063751 + L2 LINE L2 2175 2516 -798 803 137 46 7 chr1 185600755 185600908 -57063445 - L1MA8 LINE L1 -1 6290 6132 247 308 99 0 chr1 185601241 185601332 -57063021 + L2 LINE L2 3169 3268 -4 196 271 0 0 chr1 185601398 185601446 -57062907 + MER5A DNA MER1_type 10 57 -132 294 300 150 0 chr1 185601723 185601843 -57062510 + MIR SINE MIR 122 259 -3 487 92 23 0 chr1 185602695 185602782 -57061571 + (TC)n Simple_repeat Simple_repeat 1 89 0 474 203 24 24 chr1 185603504 185603627 -57060726 + MER53 DNA DNA 2 124 -65 1038 234 96 35 chr1 185603636 185604030 -57060323 - MLT1C LTR MaLR -44 423 6 899 331 91 13 chr1 185604227 185605019 -57059334 - L2 LINE L2 -2 3311 2453 566 285 86 53 chr1 185605050 185605446 -57058907 + MLT1J LTR MaLR 102 510 -1 206 322 5 10 chr1 185606486 185606545 -57057808 - MIR SINE MIR -96 112 53 1958 139 32 19 chr1 185606545 185606854 -57057499 - AluSq SINE Alu 0 313 1 206 322 5 10 chr1 185606854 185606894 -57057459 - MIR SINE MIR -155 53 14 25 0 0 0 chr1 185607046 185607071 -57057282 + AT_rich Low_complexity Low_complexity 1 25 0 295 327 56 9 chr1 185607610 185607717 -57056636 - L2 LINE L2 -11 3261 3150 276 173 0 0 chr1 185607861 185607913 -57056440 - MLT2D LTR ERVL 0 520 469 455 163 20 10 chr1 185607919 185608017 -57056336 - MLT2C2 LTR ERVL -332 132 34 466 206 0 43 chr1 185608110 185608251 -57056102 + (TG)n Simple_repeat Simple_repeat 2 136 0 1575 164 50 33 chr1 185608253 185608597 -57055756 - MLT2D LTR ERVL -40 480 34 847 406 70 24 chr1 185609208 185609622 -57054731 + MER57B LTR ERV1 2 434 0 992 297 179 28 chr1 185612965 185613834 -57050519 - L2 LINE L2 -20 3293 2277 410 326 70 19 chr1 185613926 185614141 -57050212 - L2 LINE L2 0 3313 3088 2322 61 3 45 chr1 185615338 185615648 -57048705 - AluY SINE Alu -14 297 1 190 302 0 0 chr1 185616602 185616665 -57047688 - L2 LINE L2 -321 2992 2930 271 37 481 0 chr1 185616900 185616954 -57047399 - MADE1 DNA Mariner 0 80 1 394 305 7 28 chr1 185617108 185617249 -57047104 - L2 LINE L2 -1 3312 3175 738 266 30 34 chr1 185617419 185617686 -57046667 + MARNA DNA Mariner 183 448 -138 195 100 0 0 chr1 185617979 185618009 -57046344 + (CA)n Simple_repeat Simple_repeat 1 30 0 348 96 0 0 chr1 185619141 185619193 -57045160 + L1MB1 LINE L1 6116 6167 -1 2060 112 10 7 chr1 185620234 185620528 -57043825 + AluSg SINE Alu 1 295 -15 217 427 99 20 chr1 185620799 185621052 -57043301 + L2 LINE L2 3000 3272 0 1924 116 43 0 chr1 185621176 185621452 -57042901 + AluSx SINE Alu 1 288 -24 915 145 12 36 chr1 185621947 185622113 -57042240 + L1PA16 LINE L1 5998 6159 -7 406 201 244 24 chr1 185622519 185622683 -57041670 + MER2 DNA MER2_type 146 345 0 425 296 13 20 chr1 185622833 185622985 -57041368 + L1ME LINE L1 576 726 -5908 245 109 273 0 chr1 185623026 185623081 -57041272 - MADE1 DNA Mariner -10 70 1 293 288 76 8 chr1 185623243 185623361 -57040992 + L1ME LINE L1 892 1017 -5617 2403 57 3 0 chr1 185623642 185623940 -57040413 - AluY SINE Alu -12 299 1 861 245 120 23 chr1 185623986 185624479 -57039874 + L1ME LINE L1 1095 1642 -4900 1098 226 87 16 chr1 185624482 185624791 -57039562 + L1ME2 LINE L1 5825 6155 -9 2110 208 18 35 chr1 185626751 185627266 -57037087 + L1MB7 LINE L1 466 971 -6518 4559 246 53 26 chr1 185627340 185629344 -57035009 + L1MB7 LINE L1 1887 3944 -3621 2235 240 64 18 chr1 185629444 185630165 -57034188 + L1MB7 LINE L1 4926 5679 -1886 4190 165 19 9 chr1 185630188 185630958 -57033395 + L1MB7 LINE L1 6807 7584 -19 2126 208 27 82 chr1 185631004 185631259 -57033094 - MER90 LTR ERV1 0 614 346 1996 165 0 0 chr1 185631259 185631562 -57032791 - AluSx SINE Alu -9 303 1 2126 208 27 82 chr1 185631562 185631903 -57032450 - MER90 LTR ERV1 -268 346 51 1742 182 68 56 chr1 185632048 185632547 -57031806 - MLT1D LTR MaLR 0 505 1 338 339 26 15 chr1 185632796 185632991 -57031362 - MER117 DNA MER1_type 0 197 1 5162 169 43 6 chr1 185633483 185635363 -57028990 + L1PA16 LINE L1 4213 6157 -9 24 0 0 0 chr1 185635502 185635526 -57028827 + AT_rich Low_complexity Low_complexity 1 24 0 682 301 152 21 chr1 185635917 185636382 -57027971 + L2 LINE L2 2695 3219 -94 204 258 76 15 chr1 185636336 185636402 -57027951 - L2 LINE L2 -620 2694 2625 * 205 219 0 0 chr1 185636393 185636434 -57027919 + MIR SINE MIR 211 251 -11 260 275 81 19 chr1 185636784 185636944 -57027409 - L1ME4a LINE L1 -1 6120 5951 186 133 0 0 chr1 185638270 185638300 -57026053 + (T)n Simple_repeat Simple_repeat 1 30 0 196 348 44 51 chr1 185638446 185638527 -57025826 + L2 LINE L2 3110 3192 -80 2121 105 0 3 chr1 185638527 185638851 -57025502 - AluSp SINE Alu 0 323 1 196 348 44 51 chr1 185638851 185638926 -57025427 + L2 LINE L2 3192 3266 -6 343 249 238 11 chr1 185639139 185639324 -57025029 + MIR SINE MIR 3 229 -33 748 183 0 16 chr1 185640327 185640453 -57023900 - FLAM_A SINE Alu -9 124 1 1644 186 27 7 chr1 185640785 185641081 -57023272 + AluJb SINE Alu 3 304 -8 246 32 0 0 chr1 185642070 185642101 -57022252 + (CAA)n Simple_repeat Simple_repeat 2 32 0 308 264 32 80 chr1 185643722 185643847 -57020506 + MIR SINE MIR 32 150 -112 1853 168 17 20 chr1 185643855 185644200 -57020153 + MER2 DNA MER2_type 1 344 0 447 292 119 59 chr1 185644296 185644608 -57019745 + L2 LINE L2 2846 3187 -126 189 0 0 0 chr1 185644608 185644629 -57019724 + (CA)n Simple_repeat Simple_repeat 2 22 0 447 292 119 59 chr1 185644629 185644703 -57019650 + L2 LINE L2 3187 3255 -58 1982 204 5 10 chr1 185644804 185645210 -57019143 + L1MC1 LINE L1 5930 6333 0 313 323 207 33 chr1 185645390 185645724 -57018629 - L3 LINE CR1 -533 1044 653 345 245 226 13 chr1 185645854 185646013 -57018340 - L3 LINE CR1 -926 651 459 383 216 57 11 chr1 185646065 185646153 -57018200 - L2 LINE L2 -35 3278 3187 2302 95 3 3 chr1 185646184 185646490 -57017863 - AluSc SINE Alu -3 306 1 552 313 49 5 chr1 185646707 185646931 -57017422 + MIR SINE MIR 10 243 -19 355 336 23 30 chr1 185647112 185647243 -57017110 + L2 LINE L2 3138 3267 -5 959 176 40 44 chr1 185648001 185648228 -57016125 + pTR5 LTR ERV1 743 968 -1470 * 1165 95 6 0 chr1 185648217 185648386 -57015967 + pTR5 LTR ERV1 223 392 -2046 805 244 109 5 chr1 185649202 185649403 -57014950 + MER58A DNA MER1_type 3 224 0 225 308 67 19 chr1 185649589 185649693 -57014660 - MIR SINE MIR -44 218 110 1249 195 38 102 chr1 185649709 185650109 -57014244 + MLT1A2 LTR MaLR 1 374 0 1751 226 75 57 chr1 185650997 185651541 -57012812 - L1ME2 LINE L1 -11 6433 5880 276 220 83 83 chr1 185651719 185651828 -57012525 + L2 LINE L2 3164 3272 0 260 243 14 0 chr1 185651949 185652019 -57012334 + (TA)n Simple_repeat Simple_repeat 1 71 0 712 200 21 7 chr1 185653064 185653209 -57011144 - MER58B DNA MER1_type -1 340 194 2224 100 0 7 chr1 185653239 185653528 -57010825 - AluSc SINE Alu -12 297 11 1227 263 77 60 chr1 185653716 185654195 -57010158 + L1MCb LINE L1 3 489 -5556 2208 93 17 0 chr1 185654244 185654535 -57009818 + AluSp SINE Alu 1 296 -17 210 272 0 37 chr1 185654681 185654881 -57009472 + CT-rich Low_complexity Low_complexity 1 192 0 547 130 20 0 chr1 185655072 185655172 -57009181 + GA-rich Low_complexity Low_complexity 2 103 0 361 133 13 40 chr1 185655172 185655247 -57009106 + L1MCb LINE L1 551 623 -5422 1807 129 10 20 chr1 185655251 185655553 -57008800 - AluJb SINE Alu 0 312 14 1968 190 24 8 chr1 185655587 185656323 -57008030 - L1ME2 LINE L1 -705 5908 5130 * 5186 173 39 61 chr1 185656318 185657424 -57006929 - L1ME2 LINE L1 -5320 1106 25 423 249 55 36 chr1 185657424 185657589 -57006764 - MER67A LTR ERV1 0 543 376 389 281 64 59 chr1 185657688 185657891 -57006462 - MER67B LTR ERV1 -457 204 1 2044 112 44 3 chr1 185658185 185658481 -57005872 - AluSq SINE Alu -5 308 1 2250 98 17 0 chr1 185658760 185659056 -57005297 - AluSc SINE Alu -8 301 1 1173 213 61 37 chr1 185659172 185659500 -57004853 - MER46C DNA MER2_type -1 337 2 394 257 303 11 chr1 185660288 185660463 -57003890 + MIR SINE MIR 37 262 0 28 0 0 0 chr1 185660519 185660547 -57003806 + AT_rich Low_complexity Low_complexity 1 28 0 240 380 171 15 chr1 185660727 185660990 -57003363 + L2 LINE L2 2945 3248 -24 1081 155 20 109 chr1 185661812 185662115 -57002238 + L1MA9 LINE L1 6010 6285 -27 1784 247 240 29 chr1 185662532 185663704 -57000649 + L2 LINE L2 1877 3312 -1 1106 202 27 5 chr1 185663797 185664090 -57000263 + MER33 DNA MER1_type 1 293 -31 236 194 10 136 chr1 185664410 185664513 -56999840 + MLT1J LTR MaLR 422 511 0 433 299 37 51 chr1 185664550 185664771 -56999582 - MIR SINE MIR -41 221 5 2300 60 43 0 chr1 185665403 185665685 -56998668 - AluY SINE Alu -17 294 1 383 333 46 53 chr1 185666269 185666572 -56997781 + L2 LINE L2 2402 2702 -612 1954 143 0 23 chr1 185666659 185666966 -56997387 - AluSx SINE Alu -12 300 1 1262 225 138 18 chr1 185666993 185667393 -56996960 + L1ME3A LINE L1 5717 6164 -6 441 330 52 5 chr1 185667541 185667735 -56996618 + L2 LINE L2 2891 3093 -179 1872 254 86 49 chr1 185668205 185668861 -56995492 + Charlie8 DNA MER1_type 16 699 -244 1662 190 38 0 chr1 185668861 185669151 -56995202 + AluJb SINE Alu 1 301 -11 1872 254 86 49 chr1 185669151 185669337 -56995016 + Charlie8 DNA MER1_type 699 877 -66 1943 135 7 0 chr1 185669758 185670047 -56994306 + AluSq SINE Alu 1 291 -22 1483 215 171 21 chr1 185670326 185670795 -56993558 + MLT1F LTR MaLR 3 541 -1 222 234 21 0 chr1 185670972 185671019 -56993334 + L2 LINE L2 3258 3305 -8 2268 101 10 0 chr1 185671140 185671447 -56992906 + AluSx SINE Alu 1 310 -2 2605 245 105 20 chr1 185672258 185673184 -56991169 + L1MC4 LINE L1 6884 7887 -155 207 0 0 0 chr1 185673195 185673218 -56991135 + (TG)n Simple_repeat Simple_repeat 2 24 0 2355 88 3 0 chr1 185673299 185673605 -56990748 + AluSx SINE Alu 1 307 -5 1088 134 0 0 chr1 185673605 185673754 -56990599 + AluSg/x SINE Alu 134 282 -30 825 174 31 6 chr1 185674009 185674170 -56990183 + FRAM SINE Alu 1 165 -1 202 333 64 50 chr1 185674877 185674936 -56989417 + L2 LINE L2 2659 2716 -598 2216 162 65 7 chr1 185674936 185675398 -56988955 + L1MB2 LINE L1 5682 6170 -1 202 333 64 50 chr1 185675398 185675557 -56988796 + L2 LINE L2 2716 2880 -434 328 256 24 0 chr1 185675804 185675886 -56988467 + L2 LINE L2 3230 3313 0 2691 196 11 58 chr1 185676129 185676771 -56987582 + LTR9 LTR ERV1 1 612 0 446 266 28 0 chr1 185676953 185677062 -56987291 - MLT1H LTR MaLR -40 509 398 350 280 30 65 chr1 185677120 185677288 -56987065 - MLT1H LTR MaLR -387 162 1 461 250 113 0 chr1 185677440 185677608 -56986745 + L1P5 LINE L1 8 194 -6669 14499 193 37 14 chr1 185677608 185681539 -56982814 + L1P5 LINE L1 903 5146 -1721 180 0 0 0 chr1 185681539 185681559 -56982794 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 14499 193 37 14 chr1 185681559 185682940 -56981413 + L1P5 LINE L1 5146 6494 -373 1235 139 39 2 chr1 185683141 185683450 -56980903 + MLT1B LTR MaLR 3 388 -2 396 198 189 0 chr1 185684596 185684707 -56979646 + MIR SINE MIR 74 205 -57 180 263 138 38 chr1 185684723 185684803 -56979550 - L2 LINE L2 -33 3280 3193 761 287 97 7 chr1 185684814 185685061 -56979292 + MLT1H LTR MaLR 24 291 -258 4034 219 15 41 chr1 185685729 185686745 -56977608 + L1MD2 LINE L1 4103 5083 -1063 2342 85 3 13 chr1 185686745 185687052 -56977301 + AluSx SINE Alu 1 304 -8 4034 219 15 41 chr1 185687052 185687245 -56977108 + L1MD2 LINE L1 5083 5280 -866 3043 176 149 16 chr1 185687248 185687985 -56976368 - Tigger6a DNA MER2_type -247 836 2 4767 184 34 40 chr1 185687985 185688032 -56976321 + L1MD2 LINE L1 5268 5314 -1045 2423 97 0 0 chr1 185688032 185688340 -56976013 + AluSc SINE Alu 1 308 -1 4767 184 34 40 chr1 185688340 185689391 -56974962 + L1MD2 LINE L1 5314 6359 0 372 291 28 15 chr1 185689394 185689536 -56974817 + L1P4 LINE L1 5612 5757 -411 276 95 0 24 chr1 185690108 185690150 -56974203 - LTR50 LTR ERVL -1 794 754 481 249 69 37 chr1 185690617 185690834 -56973519 - LTR41 LTR ERVL -549 224 1 287 309 16 41 chr1 185691478 185691601 -56972752 - MER5A DNA MER1_type -44 145 26 517 264 174 0 chr1 185691646 185691801 -56972552 + Charlie7 DNA MER1_type 5 186 -2426 577 166 91 53 chr1 185691881 185692068 -56972285 + Charlie7 DNA MER1_type 375 568 -2044 290 272 118 35 chr1 185692069 185692238 -56972115 + Charlie7 DNA MER1_type 1778 1960 -652 1289 257 128 52 chr1 185692771 185693710 -56970643 + L2 LINE L2 2302 3308 -5 586 304 191 24 chr1 185695930 185696588 -56967765 + L2 LINE L2 632 1399 -1915 34 24 0 0 chr1 185696609 185696650 -56967703 + AT_rich Low_complexity Low_complexity 1 41 0 2148 121 3 3 chr1 185698085 185698390 -56965963 + AluSx SINE Alu 1 305 -7 206 105 26 0 chr1 185698398 185698436 -56965917 + A-rich Low_complexity Low_complexity 2 40 0 29 0 0 0 chr1 185699374 185699403 -56964950 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr1 185699998 185700023 -56964330 + AT_rich Low_complexity Low_complexity 1 25 0 617 260 46 17 chr1 185700196 185700369 -56963984 + MER5B DNA MER1_type 1 178 0 366 200 0 15 chr1 185700647 185700712 -56963641 - L2 LINE L2 0 3272 3209 23 0 0 0 chr1 185703229 185703252 -56961101 + AT_rich Low_complexity Low_complexity 1 23 0 260 256 35 93 chr1 185703374 185703460 -56960893 - MIR3 SINE MIR -115 93 13 13693 135 28 23 chr1 185704054 185706456 -56957897 - Tigger1 DNA MER2_type -4 2414 2 1222 162 0 21 chr1 185706905 185707139 -56957214 - L1 LINE L1 -1729 4417 4189 5746 139 44 13 chr1 185707139 185708507 -56955846 + L1MA5A LINE L1 4882 6293 -4 700 340 126 12 chr1 185708551 185708892 -56955461 - L2 LINE L2 -30 3283 2904 21 36 0 0 chr1 185708902 185708930 -56955423 + AT_rich Low_complexity Low_complexity 1 28 0 533 223 27 0 chr1 185708973 185709085 -56955268 - FLAM_A SINE Alu -18 115 1 344 308 9 9 chr1 185709136 185709243 -56955110 - L2 LINE L2 -522 2792 2686 2080 107 43 0 chr1 185710281 185710580 -56953773 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 185710805 185710828 -56953525 + AT_rich Low_complexity Low_complexity 1 23 0 6905 183 115 48 chr1 185710879 185712591 -56951762 + L1M2 LINE L1 3 1828 -5021 4506 124 52 30 chr1 185712585 185713589 -56950764 + L1MA4A LINE L1 5045 6072 -231 * 460 128 105 23 chr1 185713588 185713674 -56950679 - L1PA10 LINE L1 -1 6167 6075 * 1587 88 12 0 chr1 185713675 185713915 -56950438 + L1MA4A LINE L1 6059 6301 -2 349 307 99 60 chr1 185714206 185714489 -56949864 - L2 LINE L2 -825 2489 2196 2304 154 21 5 chr1 185714547 185714931 -56949422 + Tigger2a DNA MER2_type 1 390 -44 298 327 167 23 chr1 185715072 185715335 -56949018 - L2 LINE L2 -1400 1914 1614 1758 201 59 65 chr1 185715653 185716165 -56948188 - LTR22 LTR ERVK 0 509 1 1797 61 56 0 chr1 185716344 185716575 -56947778 + AluY SINE Alu 54 297 -14 527 92 0 0 chr1 185716621 185716697 -56947656 - Alu SINE Alu -15 295 220 599 230 130 60 chr1 185716867 185717167 -56947186 - L2 LINE L2 -692 2622 2302 695 129 0 0 chr1 185717272 185717373 -56946980 - AluS SINE Alu -212 101 1 468 237 7 72 chr1 185718529 185718668 -56945685 - MIR SINE MIR -10 252 123 254 209 15 30 chr1 185718685 185718752 -56945601 + GA-rich Low_complexity Low_complexity 1 66 0 550 212 10 0 chr1 185718822 185718921 -56945432 - Charlie1 DNA MER1_type -2661 100 1 29 0 0 0 chr1 185719060 185719089 -56945264 + AT_rich Low_complexity Low_complexity 1 29 0 330 132 66 0 chr1 185719628 185719764 -56944589 + (TA)n Simple_repeat Simple_repeat 1 145 0 414 0 0 0 chr1 185719764 185719810 -56944543 + (TG)n Simple_repeat Simple_repeat 1 46 0 234 0 0 0 chr1 185719809 185719835 -56944518 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 21 0 0 0 chr1 185719942 185719963 -56944390 + AT_rich Low_complexity Low_complexity 1 21 0 702 197 0 0 chr1 185720626 185720748 -56943605 + FLAM_A SINE Alu 1 122 -11 2182 92 10 7 chr1 185721071 185721363 -56942990 - AluSq SINE Alu -18 295 3 231 36 0 0 chr1 185721510 185721538 -56942815 + (TG)n Simple_repeat Simple_repeat 2 29 0 231 250 106 39 chr1 185722520 185722624 -56941729 - L2 LINE L2 -11 3302 3192 1010 209 183 73 chr1 185723226 185723539 -56940814 - HsTC2c DNA Tc2 -1169 729 359 2058 144 7 0 chr1 185723539 185723845 -56940508 + AluSx SINE Alu 1 308 -4 1010 209 183 73 chr1 185723845 185723942 -56940411 - HsTC2c DNA Tc2 -1539 359 274 1413 203 116 24 chr1 185723942 185724321 -56940032 - L1ME2 LINE L1 -12 6152 5739 1500 237 49 6 chr1 185724322 185724672 -56939681 - MLT1A1 LTR MaLR 0 365 1 1554 240 144 14 chr1 185724672 185725590 -56938763 - L1ME2 LINE L1 -422 5742 4698 957 274 25 11 chr1 185725593 185725874 -56938479 - HsTC2c DNA Tc2 -442 287 3 772 164 0 50 chr1 185726496 185726636 -56937717 - FLAM_C SINE Alu 0 133 1 3638 214 85 6 chr1 185726721 185727627 -56936726 + L1PB1 LINE L1 3136 4113 -2033 5696 143 24 27 chr1 185727637 185728712 -56935641 + L1PB1 LINE L1 4742 5802 -349 252 0 0 0 chr1 185728712 185728740 -56935613 + (TA)n Simple_repeat Simple_repeat 2 29 0 5696 143 24 27 chr1 185728740 185729085 -56935268 + L1PB1 LINE L1 5802 6147 -4 312 224 17 40 chr1 185729291 185729645 -56934708 + (TATATG)n Simple_repeat Simple_repeat 1 345 0 1526 190 64 0 chr1 185729776 185730118 -56934235 + L1MA4 LINE L1 5937 6300 0 371 312 86 73 chr1 185730122 185730436 -56933917 + L1MEd LINE L1 80 397 -5722 326 294 69 75 chr1 185730564 185731176 -56933177 + L1MEd LINE L1 537 1144 -4975 418 332 140 4 chr1 185731249 185731499 -56932854 + L1MEd LINE L1 1213 1496 -4814 263 200 0 0 chr1 185731499 185731549 -56932804 - L1MC/D LINE L1 -2193 5592 5543 233 406 57 0 chr1 185732829 185732952 -56931401 - L2 LINE L2 -19 3253 3124 2149 86 59 0 chr1 185733531 185733821 -56930532 + AluSg SINE Alu 1 307 -3 9401 202 35 26 chr1 185734088 185736130 -56928223 - L1PA15 LINE L1 -15 6150 4127 3389 148 68 57 chr1 185736130 185736906 -56927447 + LTR1 LTR ERV1 1 785 0 9401 202 35 26 chr1 185736906 185738089 -56926264 - L1PA15 LINE L1 -2038 4127 2914 2011 135 0 0 chr1 185738089 185738386 -56925967 + AluJb SINE Alu 1 297 -15 9401 202 35 26 chr1 185738386 185738453 -56925900 - L1PA15 LINE L1 -3251 2914 2849 193 296 32 64 chr1 185738531 185738656 -56925697 + MIR3 SINE MIR 40 160 -48 2271 71 10 7 chr1 185739246 185739543 -56924810 - AluY SINE Alu -13 298 1 528 318 166 23 chr1 185739692 185740211 -56924142 + L1MEd LINE L1 55 647 -5472 22 0 0 0 chr1 185741716 185741738 -56922615 + AT_rich Low_complexity Low_complexity 1 22 0 3225 167 57 65 chr1 185742133 185742857 -56921496 + MER44D DNA MER2_type 16 605 0 744 146 0 31 chr1 185743242 185743372 -56920981 - FLAM_C SINE Alu -7 126 1 252 273 26 13 chr1 185744065 185744142 -56920211 + GA-rich Low_complexity Low_complexity 3 80 0 534 323 91 13 chr1 185744434 185744666 -56919687 + MIR SINE MIR 4 253 -9 608 326 100 34 chr1 185744802 185745460 -56918893 - L2 LINE L2 -4 3309 2610 312 146 219 31 chr1 185745467 185745563 -56918790 - MER5C DNA MER1_type -2 322 209 669 335 109 21 chr1 185745701 185746086 -56918267 - L2 LINE L2 -710 2604 2186 3627 116 84 54 chr1 185746093 185746982 -56917371 + MER11A LTR ERVK 183 1266 0 520 295 66 17 chr1 185747312 185747553 -56916800 - MER46C DNA MER2_type -4 334 82 2458 70 0 0 chr1 185749389 185749690 -56914663 + AluY SINE Alu 1 301 -10 180 0 0 0 chr1 185749699 185749719 -56914634 + (CA)n Simple_repeat Simple_repeat 2 21 0 245 315 0 0 chr1 185749719 185749808 -56914545 + L1MC4 LINE L1 6614 6702 -1340 * 282 188 141 0 chr1 185749729 185749814 -56914539 - L1MC4 LINE L1 -1339 6703 6607 23 33 0 0 chr1 185750825 185750855 -56913498 + AT_rich Low_complexity Low_complexity 1 30 0 327 265 78 0 chr1 185751256 185751358 -56912995 + L1ME3A LINE L1 6059 6168 -2 1154 151 158 64 chr1 185753550 185753815 -56910538 - AluJb SINE Alu -12 290 1 23 0 0 0 chr1 185753917 185753940 -56910413 + AT_rich Low_complexity Low_complexity 1 23 0 2097 123 7 3 chr1 185754047 185754347 -56910006 - AluSx SINE Alu -11 301 1 572 219 59 0 chr1 185754374 185754493 -56909860 - FLAM_C SINE Alu -17 126 1 24 0 0 0 chr1 185754748 185754772 -56909581 + AT_rich Low_complexity Low_complexity 1 24 0 291 262 55 109 chr1 185754853 185755037 -56909316 - MIR SINE MIR -80 182 12 1202 204 47 94 chr1 185755149 185755532 -56908821 - MLT1A1 LTR MaLR 0 365 1 183 355 0 0 chr1 185755742 185755804 -56908549 + MIR SINE MIR 127 188 -74 2216 112 3 0 chr1 185755829 185756133 -56908220 - AluSx SINE Alu -7 305 1 332 294 52 39 chr1 185756133 185756286 -56908067 - L2 LINE L2 -10 3303 3149 5974 211 52 19 chr1 185756429 185758512 -56905841 + L1MB4 LINE L1 3748 5896 -284 686 215 13 19 chr1 185758516 185758674 -56905679 + MLT2B1 LTR ERVL 70 226 -294 336 245 78 10 chr1 185758673 185758775 -56905578 + MLT2B1 LTR ERVL 386 494 -26 * 265 196 0 0 chr1 185758888 185758934 -56905419 + MLT2C2 LTR ERVL 419 464 0 479 313 42 18 chr1 185759376 185759542 -56904811 + MIR3 SINE MIR 33 202 -6 450 0 0 0 chr1 185759945 185759995 -56904358 + (CA)n Simple_repeat Simple_repeat 2 51 0 1929 181 108 9 chr1 185760689 185761152 -56903201 + LTR22 LTR ERVK 1 509 0 2063 146 0 0 chr1 185761313 185761615 -56902738 - AluSx SINE Alu -10 302 1 22 56 0 0 chr1 185761778 185761814 -56902539 + AT_rich Low_complexity Low_complexity 1 36 0 1907 238 108 45 chr1 185761951 185762089 -56902264 - MER20B DNA MER1_type -34 749 621 2000 115 14 3 chr1 185762089 185762384 -56901969 + AluSx SINE Alu 1 298 -14 1907 238 108 45 chr1 185762384 185762948 -56901405 - MER20B DNA MER1_type -162 621 3 2055 141 0 0 chr1 185764522 185764820 -56899533 + AluSx SINE Alu 1 298 -14 185 230 53 150 chr1 185765145 185765258 -56899095 + L2 LINE L2 3170 3271 -1 194 281 169 22 chr1 185765844 185765933 -56898420 + MIR SINE MIR 41 142 -66 21 0 0 0 chr1 185766496 185766517 -56897836 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 185769465 185769506 -56894847 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 185771911 185771932 -56892421 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 185773861 185773891 -56890462 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr1 185774068 185774115 -56890238 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr1 185775442 185775470 -56888883 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 185775738 185775770 -56888583 + AT_rich Low_complexity Low_complexity 1 32 0 315 268 268 16 chr1 185776078 185776227 -56888126 - MIR SINE MIR -32 230 120 2259 42 29 52 chr1 185776227 185776536 -56887817 - AluY SINE Alu -9 302 1 315 268 268 16 chr1 185776536 185776569 -56887784 - MIR SINE MIR -142 120 2 1889 171 0 34 chr1 185777946 185778302 -56886051 + MER2 DNA MER2_type 1 344 0 301 298 139 60 chr1 185778365 185778747 -56885606 + L2 LINE L2 2458 2869 -445 308 313 102 6 chr1 185778932 185779108 -56885245 - L2 LINE L2 -738 2576 2384 307 353 10 20 chr1 185779296 185779398 -56884955 - L2 LINE L2 -4 3268 3168 271 382 36 12 chr1 185779458 185779623 -56884730 - L2 LINE L2 -221 3051 2883 1453 202 102 18 chr1 185779677 185780127 -56884226 + Charlie4a DNA MER1_type 16 503 -5 277 326 89 19 chr1 185780133 185780403 -56883950 + L1MC4 LINE L1 7613 7901 -141 1989 133 10 0 chr1 185781674 185781967 -56882386 + AluSx SINE Alu 1 296 -16 1956 234 100 36 chr1 185782074 185782654 -56881699 + MLT1E2 LTR MaLR 2 618 -8 208 347 0 0 chr1 185782663 185782735 -56881618 - L2 LINE L2 -28 3285 3214 5730 94 39 2 chr1 185783074 185784099 -56880254 + L1PA13 LINE L1 5101 6162 -1 2042 149 0 0 chr1 185784334 185784635 -56879718 - AluSx SINE Alu -10 302 2 286 281 16 0 chr1 185784828 185784892 -56879461 + MER58A DNA MER1_type 1 65 -159 21 36 0 0 chr1 185785726 185785754 -56878599 + AT_rich Low_complexity Low_complexity 1 28 0 1863 136 33 7 chr1 185785810 185786112 -56878241 + AluSx SINE Alu 1 310 -2 811 137 0 0 chr1 185786959 185787083 -56877270 - FLAM_C SINE Alu -9 134 11 29 70 0 0 chr1 185787340 185787397 -56876956 + AT_rich Low_complexity Low_complexity 1 57 0 463 250 73 59 chr1 185787480 185787684 -56876669 - MIR SINE MIR -27 235 29 682 252 41 85 chr1 185787746 185788064 -56876289 - MER102a DNA MER1_type 0 330 27 1922 111 35 7 chr1 185788680 185788969 -56875384 + AluSq SINE Alu 1 297 -16 1830 153 0 4 chr1 185789246 185789527 -56874826 - AluJb SINE Alu -32 280 1 300 27 0 0 chr1 185789562 185789599 -56874754 + (CA)n Simple_repeat Simple_repeat 2 38 0 1982 108 18 4 chr1 185790082 185790359 -56873994 + AluSx SINE Alu 1 281 -31 550 43 90 31 chr1 185790368 185790650 -56873703 + (TA)n Simple_repeat Simple_repeat 1 298 0 540 80 34 68 chr1 185790653 185791011 -56873342 + (TATAA)n Simple_repeat Simple_repeat 1 345 0 453 25 106 25 chr1 185790980 185791141 -56873212 + (TA)n Simple_repeat Simple_repeat 2 175 0 * 36 23 0 0 chr1 185791145 185791188 -56873165 + AT_rich Low_complexity Low_complexity 1 43 0 322 258 67 0 chr1 185791735 185791824 -56872529 - MLT2B1 LTR ERVL -40 480 386 * 686 215 13 19 chr1 185791823 185791981 -56872372 - MLT2B1 LTR ERVL -294 226 70 6085 209 51 19 chr1 185791985 185794069 -56870284 - L1MB4 LINE L1 -284 5896 3748 332 294 52 39 chr1 185794212 185794365 -56869988 + L2 LINE L2 3149 3303 -10 2216 112 3 0 chr1 185794365 185794669 -56869684 + AluSx SINE Alu 1 305 -7 183 355 0 0 chr1 185794694 185794756 -56869597 - MIR SINE MIR -74 188 127 1176 206 47 94 chr1 185794966 185795349 -56869004 + MLT1A1 LTR MaLR 1 365 0 275 262 55 109 chr1 185795461 185795645 -56868708 + MIR SINE MIR 12 182 -80 24 0 0 0 chr1 185795726 185795750 -56868603 + AT_rich Low_complexity Low_complexity 1 24 0 572 219 59 0 chr1 185796005 185796124 -56868229 + FLAM_C SINE Alu 1 126 -17 1983 135 7 3 chr1 185796151 185796447 -56867906 + AluSx SINE Alu 1 297 -15 256 288 0 0 chr1 185796448 185796514 -56867839 - L1P LINE L1 -3232 2914 2849 193 296 32 64 chr1 185796592 185796717 -56867636 + MIR3 SINE MIR 40 160 -48 2271 71 10 7 chr1 185797307 185797604 -56866749 - AluY SINE Alu -13 298 1 528 318 166 23 chr1 185797753 185798272 -56866081 + L1MEd LINE L1 55 647 -5472 22 0 0 0 chr1 185799777 185799799 -56864554 + AT_rich Low_complexity Low_complexity 1 22 0 3250 166 57 65 chr1 185800194 185800918 -56863435 + MER44D DNA MER2_type 16 605 0 744 146 0 31 chr1 185801303 185801433 -56862920 - FLAM_C SINE Alu -7 126 1 534 323 91 13 chr1 185802495 185802727 -56861626 + MIR SINE MIR 4 253 -9 593 329 98 34 chr1 185802866 185803525 -56860828 - L2 LINE L2 -4 3309 2610 312 146 219 31 chr1 185803532 185803628 -56860725 - MER5C DNA MER1_type -2 322 209 386 303 66 16 chr1 185803766 185803888 -56860465 + L2 LINE L2 3143 3270 -2 1976 145 7 3 chr1 185804918 185805215 -56859138 - AluSx SINE Alu -14 298 1 252 260 333 11 chr1 185806700 185806877 -56857476 + L2 LINE L2 2835 3068 -245 381 225 62 0 chr1 185806886 185806966 -56857387 + L2 LINE L2 3225 3309 -4 22 35 0 0 chr1 185807426 185807455 -56856898 + AT_rich Low_complexity Low_complexity 1 29 0 2140 77 43 7 chr1 185807642 185807942 -56856411 + AluY SINE Alu 1 311 0 25 0 0 0 chr1 185808512 185808537 -56855816 + AT_rich Low_complexity Low_complexity 1 25 0 1215 170 16 51 chr1 185808766 185809019 -56855334 - AluJb SINE Alu -19 293 50 325 232 116 27 chr1 185809127 185809239 -56855114 - MER58B DNA MER1_type -17 324 203 523 305 77 21 chr1 185809778 185810011 -56854342 - MIR SINE MIR 0 262 17 901 250 13 18 chr1 185810011 185810235 -56854118 - MER58A DNA MER1_type 0 224 2 1413 193 24 0 chr1 185810453 185810702 -56853651 - AluJb SINE Alu -57 255 1 909 125 81 25 chr1 185811335 185811495 -56852858 + MER1B DNA MER1_type 171 339 0 299 311 94 9 chr1 185811496 185811602 -56852751 + L2 LINE L2 3149 3263 -9 1938 93 11 11 chr1 185811788 185812057 -56852296 + AluSx SINE Alu 40 308 -4 2051 86 0 4 chr1 185813066 185813334 -56851019 + AluY SINE Alu 38 304 -7 2083 117 0 0 chr1 185813405 185813696 -56850657 + AluY SINE Alu 1 291 -20 324 278 15 38 chr1 185813922 185813977 -56850376 + L2 LINE L2 1959 2014 -1300 1326 202 153 11 chr1 185813977 185814176 -56850177 + MSTD LTR MaLR 1 171 -225 414 0 0 0 chr1 185814176 185814222 -56850131 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 1326 202 153 11 chr1 185814222 185814369 -56849984 + MSTD LTR MaLR 171 396 0 324 278 15 38 chr1 185814369 185814446 -56849907 + L2 LINE L2 2014 2088 -1226 379 314 9 0 chr1 185814465 185814570 -56849783 - L2 LINE L2 -9 3263 3158 2493 174 101 49 chr1 185814978 185815652 -56848701 - Charlie1 DNA MER1_type -21 2740 2032 646 271 113 22 chr1 185816699 185816928 -56847425 + MIR SINE MIR 12 261 -1 192 289 24 24 chr1 185817714 185817797 -56846556 + L3 LINE CR1 1317 1399 -178 1313 159 0 14 chr1 185817816 185818030 -56846323 + AluJo SINE Alu 11 221 -91 180 0 0 0 chr1 185818031 185818051 -56846302 + (TA)n Simple_repeat Simple_repeat 1 20 0 2106 118 0 7 chr1 185818220 185818525 -56845828 - AluSx SINE Alu -9 303 1 21 36 0 0 chr1 185818718 185818746 -56845607 + AT_rich Low_complexity Low_complexity 1 28 0 317 331 36 14 chr1 185819527 185819666 -56844687 + L1MC/D LINE L1 5584 5725 -2083 354 302 0 21 chr1 185819666 185819762 -56844591 + polypurine Low_complexity Low_complexity 4 97 0 22 0 0 0 chr1 185820654 185820676 -56843677 + AT_rich Low_complexity Low_complexity 1 22 0 479 280 32 37 chr1 185821228 185821325 -56843028 - L1MC4a LINE L1 -1886 5922 5826 2423 63 7 3 chr1 185821325 185821624 -56842729 - AluY SINE Alu -11 300 1 479 280 32 37 chr1 185821624 185821744 -56842609 - L1MC4a LINE L1 -1982 5826 5706 520 293 77 44 chr1 185821895 185822168 -56842185 - L1MC4a LINE L1 -2147 5661 5380 324 257 90 77 chr1 185822491 185822713 -56841640 - L1MC4a LINE L1 -1407 4739 4515 2468 66 0 3 chr1 185822813 185823117 -56841236 + AluY SINE Alu 2 304 -7 190 312 37 46 chr1 185823179 185823288 -56841065 + MER5A DNA MER1_type 1 108 -81 885 152 0 0 chr1 185823400 185823532 -56840821 + FLAM_C SINE Alu 1 132 -1 202 277 131 77 chr1 185823608 185823738 -56840615 + L2 LINE L2 3171 3307 -6 2562 289 131 43 chr1 185823954 185825734 -56838619 - L2 LINE L2 -18 3295 1383 1928 128 0 21 chr1 185826200 185826526 -56837827 + AluSx SINE Alu 1 320 0 1152 158 0 20 chr1 185826582 185826718 -56837635 + AluSq SINE Alu 1 133 -180 2213 119 0 0 chr1 185826718 185827020 -56837333 + AluSg SINE Alu 1 302 -8 1152 158 0 20 chr1 185827020 185827079 -56837274 + AluSq SINE Alu 133 192 -121 1800 163 3 38 chr1 185827409 185827728 -56836625 + AluJb SINE Alu 1 308 -4 1990 88 0 0 chr1 185827925 185828174 -56836179 + AluSg SINE Alu 1 249 -61 180 0 0 0 chr1 185828174 185828194 -56836159 + (A)n Simple_repeat Simple_repeat 1 20 0 26 50 0 0 chr1 185828578 185828618 -56835735 + AT_rich Low_complexity Low_complexity 1 40 0 252 0 0 0 chr1 185828696 185828724 -56835629 + (CA)n Simple_repeat Simple_repeat 1 28 0 1695 172 3 36 chr1 185828724 185829032 -56835321 - AluJb SINE Alu -14 298 1 279 282 0 39 chr1 185829896 185829999 -56834354 + Cheshire DNA MER1_type 244 342 -2078 310 261 0 0 chr1 185830066 185830135 -56834218 + L2 LINE L2 3201 3269 -3 2548 189 97 44 chr1 185830141 185830270 -56834083 + Cheshire DNA MER1_type 348 469 -1951 2147 133 7 0 chr1 185830270 185830578 -56833775 + AluSx SINE Alu 1 310 -2 2548 189 97 44 chr1 185830578 185831265 -56833088 + Cheshire DNA MER1_type 469 1207 -1213 367 164 14 0 chr1 185831304 185831377 -56832976 - Cheshire DNA MER1_type -495 1925 1852 * 1198 182 98 13 chr1 185831376 185831558 -56832795 + Cheshire DNA MER1_type 2086 2251 -169 1574 101 22 4 chr1 185831558 185831785 -56832568 + AluSp SINE Alu 76 306 -7 1198 182 98 13 chr1 185831785 185831909 -56832444 + Cheshire DNA MER1_type 2251 2418 -2 1423 194 97 0 chr1 185831988 185832267 -56832086 + AluJo SINE Alu 1 306 -6 21 36 0 0 chr1 185832327 185832355 -56831998 + AT_rich Low_complexity Low_complexity 1 28 0 479 198 36 9 chr1 185832389 185832500 -56831853 + Cheshire DNA MER1_type 1531 1644 -776 551 179 80 18 chr1 185833258 185833370 -56830983 + FLAM_A SINE Alu 11 129 -13 194 378 24 0 chr1 185834919 185835001 -56829352 + L2 LINE L2 2932 3015 -257 180 0 0 0 chr1 185835007 185835027 -56829326 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 2074 121 3 0 chr1 185835455 185835753 -56828600 + AluSx SINE Alu 1 299 -13 21 57 0 0 chr1 185836797 185836832 -56827521 + GC_rich Low_complexity Low_complexity 1 35 0 215 216 0 20 chr1 185836834 185836885 -56827468 + CT-rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr1 185837721 185837741 -56826612 + (TTGGGG)n Simple_repeat Simple_repeat 5 24 0 251 122 0 0 chr1 185838981 185839022 -56825331 + FLAM SINE Alu 83 123 -10 898 305 38 61 chr1 185839189 185839795 -56824558 - MER110-int LTR ERV1 -1685 2962 2371 4012 234 29 4 chr1 185839942 185841351 -56823002 - L1MCa LINE L1 -2661 3765 2393 267 31 0 0 chr1 185841351 185841383 -56822970 + (TG)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr1 185841382 185841406 -56822947 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 4012 234 29 4 chr1 185841383 185841406 -56822947 - L1MCa LINE L1 -4033 2393 2372 1577 219 0 0 chr1 185841406 185841684 -56822669 - AluJo SINE Alu -34 278 1 4012 234 29 4 chr1 185841684 185841727 -56822626 - L1MCa LINE L1 -4054 2372 2277 2057 123 3 7 chr1 185841729 185842164 -56822189 - AluSx SINE Alu 0 434 1 5894 173 42 22 chr1 185842181 185842304 -56822049 - L1MCa LINE L1 -5106 1320 1201 2429 65 0 19 chr1 185842304 185842614 -56821739 - AluY SINE Alu -7 304 1 5894 173 42 22 chr1 185842614 185843744 -56820609 - L1MCa LINE L1 -5225 1201 42 27 0 0 0 chr1 185843796 185843823 -56820530 + AT_rich Low_complexity Low_complexity 1 27 0 1888 120 65 9 chr1 185845812 185846137 -56818216 + MER61A LTR ERV1 1 343 0 2246 85 14 0 chr1 185846254 185846547 -56817806 + AluSc SINE Alu 1 297 -12 1813 176 0 7 chr1 185846555 185846856 -56817497 + AluJo SINE Alu 1 299 -13 597 250 73 15 chr1 185846867 185847071 -56817282 + LTR40b LTR ERVL 245 460 -2 585 221 87 67 chr1 185847072 185847205 -56817148 - MER58C DNA MER1_type -2205 215 75 1811 171 7 0 chr1 185847205 185847497 -56816856 + AluJo SINE Alu 3 296 -16 585 221 87 67 chr1 185847497 185847571 -56816782 - MER58C DNA MER1_type -2345 75 4 560 297 29 21 chr1 185847578 185847817 -56816536 - MER90 LTR ERV1 -31 583 343 429 235 47 53 chr1 185847818 185847988 -56816365 - MER58C DNA MER1_type -1 214 46 240 184 82 0 chr1 185848104 185848153 -56816200 + L2 LINE L2 3261 3313 0 428 145 26 0 chr1 185848191 185848267 -56816086 + MER89 LTR ERV1 1 78 -481 947 165 176 29 chr1 185848298 185848419 -56815934 - MER90 LTR ERV1 -262 313 211 1849 151 41 0 chr1 185848419 185848711 -56815642 - AluJo SINE Alu -8 304 1 947 165 176 29 chr1 185848711 185848861 -56815492 - MER90 LTR ERV1 -364 211 2 1102 182 77 149 chr1 185849212 185849656 -56814697 - MLT2D LTR ERVL 0 414 3 261 0 0 0 chr1 185849668 185849697 -56814656 + (T)n Simple_repeat Simple_repeat 1 29 0 220 122 98 0 chr1 185850363 185850404 -56813949 + L2 LINE L2 3261 3305 -8 328 167 0 0 chr1 185850446 185850506 -56813847 + MER89 LTR ERV1 1 60 -499 384 192 13 0 chr1 185850558 185850636 -56813717 + MER89 LTR ERV1 301 379 -180 2261 97 0 13 chr1 185850636 185850934 -56813419 - AluSg SINE Alu -16 294 1 1363 129 6 138 chr1 185850946 185850983 -56813370 - L1MA9 LINE L1 -48 6264 6224 1598 169 180 0 chr1 185850983 185851345 -56813008 - MSTC LTR MaLR 0 428 2 1363 129 6 138 chr1 185851345 185851444 -56812909 - L1MA9 LINE L1 -88 6224 6114 2300 112 7 0 chr1 185851444 185851748 -56812605 - AluSx SINE Alu -6 306 1 1363 129 6 138 chr1 185851748 185851966 -56812387 - L1MA9 LINE L1 -198 6114 5956 24 32 0 0 chr1 185852059 185852090 -56812263 + AT_rich Low_complexity Low_complexity 1 31 0 2076 113 7 3 chr1 185852377 185852679 -56811674 - AluSp SINE Alu -3 310 8 373 258 61 128 chr1 185853637 185853732 -56810621 - L1M2 LINE L1 -5527 1322 1222 198 103 0 0 chr1 185853732 185853761 -56810592 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 373 258 61 128 chr1 185853761 185854138 -56810215 - L1M2 LINE L1 -5627 1222 687 411 265 32 32 chr1 185854217 185854406 -56809947 - MER53 DNA DNA 0 189 1 231 160 40 107 chr1 185854813 185854888 -56809465 + L2 LINE L2 3227 3296 -17 1101 85 69 32 chr1 185855581 185855770 -56808583 - Tigger7 DNA MER2_type -5 2482 2287 * 3149 148 76 68 chr1 185855769 185856480 -56807873 - Tigger7 DNA MER2_type -1770 717 1 2095 131 0 3 chr1 185856567 185856858 -56807495 + AluSx SINE Alu 1 290 -22 472 205 63 31 chr1 185857431 185857558 -56806795 - MIR SINE MIR -10 252 122 2211 126 3 0 chr1 185858717 185859027 -56805326 - AluSx SINE Alu -1 311 1 1653 176 44 0 chr1 185859589 185859889 -56804464 + AluJb SINE Alu 1 312 0 293 340 19 19 chr1 185860044 185860150 -56804203 + MER5B DNA MER1_type 3 108 -70 2140 94 28 0 chr1 185860369 185860655 -56803698 + AluSx SINE Alu 1 294 -18 1585 144 83 11 chr1 185860669 185860961 -56803392 - AluSx SINE Alu 0 311 1 936 244 26 9 chr1 185860969 185861199 -56803154 + MIR SINE MIR 3 236 -26 646 271 113 22 chr1 185862169 185862398 -56801955 + MIR SINE MIR 12 261 -1 192 289 24 24 chr1 185863184 185863267 -56801086 + L3 LINE CR1 1317 1399 -178 1313 159 0 14 chr1 185863286 185863500 -56800853 + AluJo SINE Alu 11 221 -91 180 0 0 0 chr1 185863501 185863521 -56800832 + (TA)n Simple_repeat Simple_repeat 1 20 0 2284 96 0 3 chr1 185863690 185863992 -56800361 - AluSg SINE Alu -9 301 1 1888 143 7 10 chr1 185864827 185865120 -56799233 - AluSx SINE Alu -20 292 1 368 350 74 21 chr1 185865533 185865816 -56798537 + L1MEd LINE L1 34 331 -5788 375 297 71 26 chr1 185865901 185866056 -56798297 + MIR SINE MIR 74 235 -27 1631 163 0 86 chr1 185866305 185866643 -56797710 - AluJo SINE Alu -3 309 1 2393 90 0 0 chr1 185869116 185869417 -56794936 + AluSc SINE Alu 1 301 -8 1342 172 62 58 chr1 185870908 185871199 -56793154 + AluJb SINE Alu 1 292 -20 213 316 32 42 chr1 185872268 185872363 -56791990 + MIR3 SINE MIR 106 199 -9 33 56 0 0 chr1 185873503 185873557 -56790796 + AT_rich Low_complexity Low_complexity 1 54 0 296 262 199 48 chr1 185875130 185875336 -56789017 - MIR SINE MIR -3 259 23 304 232 207 0 chr1 185875337 185875446 -56788907 + FRAM SINE Alu 66 146 -20 225 0 0 0 chr1 185875451 185875476 -56788877 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 917 191 51 6 chr1 185875489 185875667 -56788686 - MER5A DNA MER1_type -2 187 2 438 216 88 10 chr1 185875699 185875801 -56788552 - MER3 DNA MER1_type -91 118 9 1838 147 52 0 chr1 185876170 185876456 -56787897 + AluJb SINE Alu 1 301 -11 32 43 0 0 chr1 185877402 185877448 -56786905 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 185877598 185877619 -56786734 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 185878030 185878056 -56786297 + AT_rich Low_complexity Low_complexity 1 26 0 2398 134 37 7 chr1 185878176 185878608 -56785745 - L1MB4 LINE L1 -1 6179 5735 462 139 65 9 chr1 185878612 185878720 -56785633 + L1M4 LINE L1 4317 4430 -1716 * 5302 187 86 36 chr1 185878719 185879071 -56785282 - L1MB4 LINE L1 -451 5729 5396 2199 105 0 13 chr1 185879071 185879375 -56784978 - AluSq SINE Alu -13 300 1 5302 187 86 36 chr1 185879375 185879833 -56784520 - L1MB4 LINE L1 -784 5396 4963 2138 134 0 3 chr1 185879833 185880138 -56784215 + AluSx SINE Alu 3 306 -6 5302 187 86 36 chr1 185880138 185881216 -56783137 - L1MB4 LINE L1 -1217 4963 3739 728 128 45 30 chr1 185881373 185881506 -56782847 + MSTA LTR MaLR 1 135 -293 2314 102 12 84 chr1 185881519 185881923 -56782430 + THE1C LTR MaLR 1 375 0 27 49 0 0 chr1 185883058 185883099 -56781254 + AT_rich Low_complexity Low_complexity 1 41 0 239 114 23 0 chr1 185883748 185883792 -56780561 + (TTATA)n Simple_repeat Simple_repeat 4 48 0 299 264 207 25 chr1 185883980 185884101 -56780252 + MIR3 SINE MIR 15 157 -51 1592 166 60 0 chr1 185884159 185884275 -56780078 + AluSx SINE Alu 1 109 -198 7562 22 6 0 chr1 185884275 185885479 -56778874 + L1PA4 LINE L1 4943 6151 -4 1592 166 60 0 chr1 185885479 185885653 -56778700 + AluSx SINE Alu 109 307 0 341 171 133 57 chr1 185885761 185885866 -56778487 - Charlie8 DNA MER1_type -2272 145 33 224 363 88 18 chr1 185886336 185886507 -56777846 - MIR3 SINE MIR -9 199 17 340 305 55 51 chr1 185886582 185886818 -56777535 + L1M4 LINE L1 4996 5232 -914 317 179 13 90 chr1 185886854 185886916 -56777437 + L2 LINE L2 3242 3300 -13 2138 123 0 0 chr1 185886916 185887230 -56777123 + AluSq SINE Alu 1 314 0 317 179 13 90 chr1 185887230 185887244 -56777109 + L2 LINE L2 3300 3313 0 555 153 34 17 chr1 185887314 185887491 -56776862 + (TA)n Simple_repeat Simple_repeat 1 180 0 342 162 145 34 chr1 185887663 185887780 -56776573 + L1MC/D LINE L1 5682 5811 -1997 1936 150 49 15 chr1 185887925 185888251 -56776102 + MER1B DNA MER1_type 1 337 0 370 254 164 22 chr1 185890697 185890831 -56773522 + MLT1L LTR MaLR 5 157 -458 591 206 6 103 chr1 185890831 185890996 -56773357 - MER5A DNA MER1_type -2 187 39 985 246 128 54 chr1 185890997 185891420 -56772933 + MLT1L LTR MaLR 142 595 -20 189 243 0 0 chr1 185891651 185891688 -56772665 - MIR SINE MIR -6 256 220 2450 55 13 13 chr1 185891735 185892046 -56772307 + AluY SINE Alu 1 311 0 494 313 159 31 chr1 185892519 185893066 -56771287 - L2 LINE L2 -1161 2153 1537 1139 253 63 72 chr1 185894773 185895216 -56769137 + MER21B LTR ERV1 20 458 -405 938 267 56 51 chr1 185895225 185895600 -56768753 + MER21B LTR ERV1 378 754 -109 4743 151 29 45 chr1 185895611 185896716 -56767637 + L1MB7 LINE L1 5100 6184 0 2355 74 0 3 chr1 185897220 185897517 -56766836 - AluSg SINE Alu -14 296 1 409 218 179 6 chr1 185897975 185898131 -56766222 - Charlie8 DNA MER1_type -2140 277 95 249 228 18 0 chr1 185900238 185900295 -56764058 + L2 LINE L2 3164 3221 -51 208 339 0 0 chr1 185900913 185900975 -56763378 - L2 LINE L2 -6 3266 3205 2293 72 7 0 chr1 185900976 185901267 -56763086 - AluSg SINE Alu -13 297 5 278 274 193 15 chr1 185901976 185902111 -56762242 - L2 LINE L2 -831 2483 2325 2802 230 53 6 chr1 185902799 185903616 -56760737 + L1M4 LINE L1 3086 3940 -2206 1636 246 56 16 chr1 185903616 185904115 -56760238 - LTR40a LTR ERVL 0 519 1 322 151 14 68 chr1 185904143 185904216 -56760137 - HERVL40 LTR ERVL -57 5473 5405 265 293 67 0 chr1 185904234 185904309 -56760044 - HERVL68 LTR ERVL -175 2862 2783 443 242 96 118 chr1 185904532 185904854 -56759499 - HERVL68 LTR ERVL -350 2687 2373 235 343 63 14 chr1 185905279 185905422 -56758931 + L2 LINE L2 3146 3295 -18 22 0 0 0 chr1 185905451 185905473 -56758880 + AT_rich Low_complexity Low_complexity 1 22 0 240 323 52 52 chr1 185905518 185905710 -56758643 - MIR SINE MIR -70 192 1 209 262 49 0 chr1 185906327 185906388 -56757965 + MIR SINE MIR 20 83 -179 341 313 279 0 chr1 185906450 185906651 -56757702 - MIR SINE MIR 0 262 6 1061 174 17 65 chr1 185906669 185906899 -56757454 - MER20 DNA MER1_type 0 219 1 266 227 171 0 chr1 185907581 185907669 -56756684 - MIR SINE MIR -71 191 89 189 0 0 0 chr1 185907722 185907743 -56756610 + (T)n Simple_repeat Simple_repeat 1 21 0 798 176 0 0 chr1 185908299 185908424 -56755929 + FLAM_A SINE Alu 1 125 -8 1919 145 6 41 chr1 185908451 185908769 -56755584 - AluSx SINE Alu -5 307 1 4294 215 107 37 chr1 185909607 185909716 -56754637 - Charlie1a DNA MER1_type -1341 1420 1320 1630 143 6 65 chr1 185909716 185909792 -56754561 + AluJo SINE Alu 2 81 -231 2129 111 17 7 chr1 185909792 185910089 -56754264 - AluSx SINE Alu -12 300 1 1630 143 6 65 chr1 185910089 185910333 -56754020 + AluJo SINE Alu 81 303 -9 4294 215 107 37 chr1 185910333 185911542 -56752811 - Charlie1a DNA MER1_type -1441 1320 10 350 303 22 0 chr1 185911941 185912030 -56752323 - L2 LINE L2 0 3272 3182 195 42 0 0 chr1 185912042 185912066 -56752287 + (TAA)n Simple_repeat Simple_repeat 3 26 0 553 288 132 36 chr1 185912068 185912287 -56752066 - MIR SINE MIR 0 262 23 248 208 56 0 chr1 185912468 185912593 -56751760 + (TA)n Simple_repeat Simple_repeat 1 132 0 631 245 8 2 chr1 185912639 185912788 -56751565 - MIR SINE MIR -60 148 3 1904 162 7 0 chr1 185912889 185913186 -56751167 + AluJo SINE Alu 1 299 -13 2352 163 42 2 chr1 185913528 185913938 -56750415 - MSTB LTR MaLR 0 426 1 365 266 109 16 chr1 185914885 185915069 -56749284 - L2 LINE L2 -1 3312 3112 2270 207 77 33 chr1 185915095 185915713 -56748640 - MER77 LTR ERV1 -6 599 41 349 306 112 39 chr1 185915757 185915963 -56748390 - L2 LINE L2 -221 3051 2831 225 0 0 0 chr1 185916043 185916068 -56748285 + (T)n Simple_repeat Simple_repeat 1 25 0 377 244 146 66 chr1 185916076 185916289 -56748064 - MLT1J LTR MaLR -137 374 145 507 333 115 29 chr1 185916384 185916696 -56747657 - L2 LINE L2 -489 2825 2487 1042 272 103 33 chr1 185917047 185917094 -56747259 - L1ME3A LINE L1 -234 5936 5894 1729 161 67 7 chr1 185917094 185917379 -56746974 - AluJb SINE Alu -10 302 1 1042 272 103 33 chr1 185917379 185917931 -56746422 - L1ME3A LINE L1 -276 5894 5295 13207 185 36 33 chr1 185917938 185919801 -56744552 - L1MA4 LINE L1 -8 7711 5855 1879 140 3 30 chr1 185919801 185920101 -56744252 - AluSx SINE Alu -20 292 1 13207 185 36 33 chr1 185920101 185920220 -56744133 - L1MA4 LINE L1 -1864 5855 5738 1805 155 32 3 chr1 185920220 185920504 -56743849 - AluJo SINE Alu -18 294 3 13207 185 36 33 chr1 185920504 185920748 -56743605 - L1MA4 LINE L1 -1981 5738 5496 2535 47 3 0 chr1 185920748 185921045 -56743308 - AluY SINE Alu -13 298 1 13207 185 36 33 chr1 185921045 185921316 -56743037 - L1MA4 LINE L1 -2223 5496 5227 786 9 19 47 chr1 185921316 185921422 -56742931 - L1PA5 LINE L1 0 6154 6052 13207 185 36 33 chr1 185921422 185923957 -56740396 - L1MA4 LINE L1 -2492 5227 2659 1503 267 97 30 chr1 185923937 185924968 -56739385 - L1ME3A LINE L1 -1763 4383 3284 * 26 30 0 0 chr1 185925668 185925701 -56738652 + AT_rich Low_complexity Low_complexity 1 33 0 6900 59 2 0 chr1 185925702 185926961 -56737392 - L1PA7 LINE L1 -15 6139 4873 495 254 64 0 chr1 185927445 185927555 -56736798 + L2 LINE L2 3156 3272 0 800 183 41 12 chr1 185928806 185928975 -56735378 + MIR SINE MIR 79 252 -10 23 0 0 0 chr1 185930868 185930891 -56733462 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr1 185930962 185930996 -56733357 + AT_rich Low_complexity Low_complexity 1 34 0 909 133 0 14 chr1 185931236 185931379 -56732974 - FLAM_C SINE Alu -2 141 1 2294 113 0 0 chr1 185931508 185931817 -56732536 - AluSx SINE Alu -3 309 1 3952 201 69 27 chr1 185931879 185933470 -56730883 - L1MD1 LINE L1 0 6636 4984 2396 236 56 66 chr1 185933444 185934300 -56730053 - L1MD1 LINE L1 -5509 1031 55 * 61 37 0 0 chr1 185934590 185934672 -56729681 + AT_rich Low_complexity Low_complexity 1 82 0 795 140 7 35 chr1 185934956 185935099 -56729254 - FRAM SINE Alu -10 166 28 781 284 70 4 chr1 185935470 185935699 -56728654 + MIR SINE MIR 11 254 -8 261 231 28 56 chr1 185936354 185936462 -56727891 - L1MC5 LINE L1 -900 7061 6957 2008 104 4 22 chr1 185936537 185936815 -56727538 - AluSx SINE Alu -12 300 28 436 229 18 9 chr1 185937499 185937608 -56726745 - LTR37A LTR ERV1 -316 110 1 472 259 26 37 chr1 185937614 185937803 -56726550 - MER31-int LTR ERV1 -692 4244 4058 434 234 227 7 chr1 185938697 185938851 -56725502 - MER5A DNA MER1_type 0 189 2 291 344 49 16 chr1 185939820 185939942 -56724411 - L2 LINE L2 -6 3266 3141 22 0 0 0 chr1 185940779 185940801 -56723552 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 185941224 185941255 -56723098 + AT_rich Low_complexity Low_complexity 1 31 0 399 239 130 7 chr1 185941301 185941439 -56722914 + MIR SINE MIR 68 222 -40 25 0 0 0 chr1 185941452 185941477 -56722876 + AT_rich Low_complexity Low_complexity 1 25 0 313 310 283 0 chr1 185942002 185942147 -56722206 + MER5A DNA MER1_type 4 189 0 269 296 45 45 chr1 185942190 185942322 -56722031 + MIR SINE MIR 75 206 -56 23 33 0 0 chr1 185942545 185942575 -56721778 + AT_rich Low_complexity Low_complexity 1 30 0 1298 219 62 26 chr1 185944378 185944767 -56719586 + L1MC/D LINE L1 4755 5157 -989 320 302 144 0 chr1 185946222 185946361 -56717992 - Tigger8 DNA MER2_type -190 476 318 294 306 272 5 chr1 185946403 185946609 -56717744 - L2 LINE L2 -50 3263 3003 1263 219 56 10 chr1 185947047 185947335 -56717018 + AluJo SINE Alu 1 301 -11 260 203 135 0 chr1 185947682 185947756 -56716597 - MIR SINE MIR -43 219 136 505 211 149 62 chr1 185947827 185947988 -56716365 + MER5A DNA MER1_type 6 180 -9 262 245 123 38 chr1 185948184 185948196 -56716157 - MIR SINE MIR -32 230 220 2159 104 7 0 chr1 185948196 185948484 -56715869 - AluSp SINE Alu -22 291 2 262 245 123 38 chr1 185948484 185948577 -56715776 - MIR SINE MIR -42 220 116 253 258 100 17 chr1 185948577 185948697 -56715656 + L1MC/D LINE L1 5751 5880 -1928 365 212 3 0 chr1 185948698 185948777 -56715576 - MIR SINE MIR -102 106 35 300 210 40 30 chr1 185948777 185948862 -56715491 + CT-rich Low_complexity Low_complexity 3 91 -12 2312 102 13 0 chr1 185948862 185949167 -56715186 - AluSx SINE Alu -3 309 1 300 210 40 30 chr1 185949167 185949181 -56715172 + CT-rich Low_complexity Low_complexity 91 103 0 1146 141 22 0 chr1 185949861 185950046 -56714307 + Tigger1 DNA MER2_type 528 716 -1702 2291 92 3 0 chr1 185950216 185950509 -56713844 + AluSg1 SINE Alu 1 294 -15 248 225 28 28 chr1 185951093 185951164 -56713189 + MIR SINE MIR 23 93 -115 468 35 0 0 chr1 185951319 185951377 -56712976 + (TC)n Simple_repeat Simple_repeat 2 59 0 223 305 61 0 chr1 185951944 185952026 -56712327 - L2 LINE L2 0 3272 3186 4037 132 97 3 chr1 185952218 185952876 -56711477 + Tigger1 DNA MER2_type 4 723 -1695 5716 117 6 4 chr1 185952886 185954097 -56710256 - L1PA14 LINE L1 0 6161 4926 4900 169 12 5 chr1 185954098 185954995 -56709358 - L1PA14 LINE L1 -1701 4445 3542 9006 131 16 5 chr1 185954996 185956412 -56707941 + Tigger1 DNA MER2_type 987 2418 0 2197 98 7 0 chr1 185956505 185956792 -56707561 + AluSc SINE Alu 1 289 -20 5300 159 45 26 chr1 185956915 185957737 -56706616 - L1PB4 LINE L1 -13 6143 5338 2367 87 0 7 chr1 185957737 185958047 -56706306 - AluSp SINE Alu -5 308 1 5300 159 45 26 chr1 185958047 185959227 -56705126 - L1PB4 LINE L1 -818 5338 3994 6382 85 18 0 chr1 185959236 185959607 -56704746 - L1PA8 LINE L1 -10 6162 5799 243 0 0 0 chr1 185959607 185959634 -56704719 + (TATATG)n Simple_repeat Simple_repeat 5 31 0 6382 85 18 0 chr1 185959634 185960238 -56704115 - L1PA8 LINE L1 -373 5799 5172 878 309 46 25 chr1 185960240 185961330 -56703023 - L1PA15-16 LINE L1 -5286 1576 926 236 292 18 26 chr1 185961712 185961825 -56702528 - L1PA15-16 LINE L1 -6709 154 43 256 272 111 0 chr1 185962067 185962148 -56702205 - MER102a DNA MER1_type -1 329 240 * 1047 240 102 24 chr1 185962135 185962598 -56701755 - Charlie8 DNA MER1_type -1023 1394 1 336 322 10 7 chr1 185962781 185962987 -56701366 - L1M4 LINE L1 -2309 3837 3629 2042 141 0 3 chr1 185963025 185963322 -56701031 + AluSx SINE Alu 3 298 -14 216 182 0 0 chr1 185963370 185963414 -56700939 + (TG)n Simple_repeat Simple_repeat 1 44 0 383 285 103 18 chr1 185964118 185964283 -56700070 - L1ME LINE L1 -720 5446 5268 480 116 0 0 chr1 185965720 185965789 -56698564 + AluJ/FLAM SINE Alu 32 100 -212 1860 165 0 0 chr1 185965918 185966203 -56698150 - AluSx SINE Alu -25 287 3 1724 153 3 31 chr1 185966297 185966591 -56697762 + AluJo SINE Alu 5 290 -22 2169 116 0 3 chr1 185967113 185967405 -56696948 - AluSx SINE Alu -15 297 7 2040 138 20 3 chr1 185967413 185967711 -56696642 - AluSx SINE Alu -9 303 1 2697 112 28 49 chr1 185967718 185968184 -56696169 - MER41B LTR ERV1 -179 456 1 514 330 121 67 chr1 185968515 185969116 -56695237 - L2 LINE L2 -4 3268 2646 975 288 152 19 chr1 185969140 185969515 -56694838 + L2 LINE L2 97 521 -2793 1574 123 4 4 chr1 185969529 185969780 -56694573 + L1M2 LINE L1 5497 5747 -550 4097 278 111 10 chr1 185969825 185971162 -56693191 + L2 LINE L2 517 1988 -1326 1562 72 5 5 chr1 185971165 185971387 -56692966 - pTR5 LTR ERV1 -2046 392 171 301 235 31 20 chr1 185971389 185971487 -56692866 - LTR30 LTR ERV1 -80 642 544 3900 140 150 33 chr1 185971487 185972483 -56691870 - pTR5 LTR ERV1 -413 2025 751 2184 274 71 66 chr1 185972483 185973809 -56690544 + L2 LINE L2 1981 3312 -1 9525 93 6 12 chr1 185977309 185978679 -56685674 - Charlie3 DNA MER1_type -4 2706 1345 2000 88 73 6 chr1 185978679 185979044 -56685309 + LTR7 LTR ERV1 1 450 0 2281 161 33 22 chr1 185979044 185979498 -56684855 + HERVH LTR ERV1 1 459 -7254 5499 118 26 36 chr1 185979556 185980529 -56683824 + HERVH LTR ERV1 800 2652 -4024 1234 75 0 6 chr1 185980529 185980703 -56683650 + LTR7 LTR ERV1 278 450 0 * 8302 97 16 7 chr1 185980703 185981993 -56682360 - Charlie3 DNA MER1_type -104 2606 1 22 35 0 0 chr1 185982758 185982787 -56681566 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 185982909 185982937 -56681416 + AT_rich Low_complexity Low_complexity 1 28 0 602 252 43 65 chr1 185983189 185983419 -56680934 - MIR SINE MIR -18 244 20 21 36 0 0 chr1 185983938 185983966 -56680387 + AT_rich Low_complexity Low_complexity 1 28 0 553 255 31 47 chr1 185984951 185985143 -56679210 + MIR SINE MIR 74 262 0 194 227 0 0 chr1 185985159 185985203 -56679150 - MER5A DNA MER1_type -80 109 66 2055 197 34 40 chr1 185985633 185985879 -56678474 + L1ME1 LINE L1 5636 5882 -284 1979 135 18 6 chr1 185985879 185986220 -56678133 + L1PB3 LINE L1 5808 6152 -2 2055 197 34 40 chr1 185986220 185986502 -56677851 + L1ME1 LINE L1 5882 6161 -5 381 158 70 23 chr1 185986609 185986780 -56677573 + (TA)n Simple_repeat Simple_repeat 2 180 0 312 255 28 10 chr1 185987004 185987125 -56677228 - L1ME LINE L1 -477 5685 5560 1952 126 33 13 chr1 185987141 185987443 -56676910 - AluSx SINE Alu -4 308 1 247 286 32 0 chr1 185987536 185987599 -56676754 - MER5B DNA MER1_type -35 143 79 1035 241 93 59 chr1 185987630 185988037 -56676316 + L2 LINE L2 2172 2592 -722 277 328 45 8 chr1 185988087 185988221 -56676132 - L1MC/D LINE L1 -2025 5783 5645 795 276 57 107 chr1 185988228 185988378 -56675975 + L2 LINE L2 2606 2762 -551 274 146 0 0 chr1 185988378 185988419 -56675934 - 5S rRNA rRNA -79 42 2 795 276 57 107 chr1 185988419 185988931 -56675422 + L2 LINE L2 2762 3272 -41 207 69 0 0 chr1 185988931 185988960 -56675393 + (TATG)n Simple_repeat Simple_repeat 2 30 0 795 276 57 107 chr1 185988960 185988989 -56675364 + L2 LINE L2 3272 3301 -12 607 292 151 5 chr1 185988968 185989187 -56675166 - MIR SINE MIR -10 252 2 * 203 191 0 24 chr1 185989187 185989226 -56675127 - L3 LINE CR1 -1272 305 268 239 128 0 0 chr1 185989192 185989231 -56675122 + L2 LINE L2 3274 3312 -1 309 305 139 33 chr1 185989975 185990126 -56674227 + MIR SINE MIR 22 188 -74 2013 60 4 0 chr1 185990269 185990559 -56673794 + AluY SINE Alu 38 311 0 1562 120 26 26 chr1 185990559 185990844 -56673509 - THE1C LTR MaLR -105 259 1 315 263 0 26 chr1 185990986 185991062 -56673291 - MER5A DNA MER1_type -5 184 111 216 0 0 0 chr1 185991274 185991298 -56673055 + (T)n Simple_repeat Simple_repeat 1 24 0 388 318 23 15 chr1 185991451 185991583 -56672770 + MIR3 SINE MIR 9 141 -67 1267 151 74 4 chr1 185991685 185991943 -56672410 + L1MA4 LINE L1 6018 6293 -7 27 29 0 0 chr1 185992367 185992401 -56671952 + AT_rich Low_complexity Low_complexity 1 34 0 35 24 0 0 chr1 185992775 185992817 -56671536 + AT_rich Low_complexity Low_complexity 1 42 0 1250 162 21 21 chr1 185992903 185993138 -56671215 - MLT2B2 LTR ERVL -280 235 1 277 319 126 60 chr1 185993420 185993704 -56670649 + L2 LINE L2 2307 2624 -690 2279 89 7 3 chr1 185993704 185994006 -56670347 - AluSp SINE Alu -10 303 1 277 319 126 60 chr1 185994006 185994103 -56670250 + L2 LINE L2 2624 2713 -601 602 160 0 0 chr1 185994112 185994212 -56670141 + MER20 DNA MER1_type 120 219 0 235 359 222 0 chr1 185994218 185994416 -56669937 + L2 LINE L2 3023 3264 -8 2250 108 0 0 chr1 185994588 185994883 -56669470 - AluSg SINE Alu -15 295 1 1604 202 62 38 chr1 185995270 185995721 -56668632 - MLT1C LTR MaLR 0 467 6 2249 83 0 32 chr1 185998227 185998541 -56665812 - AluSg1 SINE Alu -5 304 1 31 44 0 0 chr1 185998652 185998697 -56665656 + AT_rich Low_complexity Low_complexity 1 45 0 358 317 130 6 chr1 185999485 185999646 -56664707 - MIR SINE MIR -62 200 20 368 340 113 7 chr1 185999725 185999875 -56664478 + MIR3 SINE MIR 42 207 -1 433 230 44 0 chr1 186001059 186001172 -56663181 - MLT1K LTR MaLR -342 246 129 983 247 26 30 chr1 186001732 186002036 -56662317 - LTR16A LTR ERVL -96 354 52 1318 208 45 31 chr1 186002375 186002663 -56661690 - AluJo SINE Alu -20 292 1 1902 140 39 0 chr1 186003230 186003515 -56660838 - AluJb SINE Alu -16 296 1 32 26 0 0 chr1 186004544 186004583 -56659770 + AT_rich Low_complexity Low_complexity 1 39 0 267 312 11 11 chr1 186004826 186004919 -56659434 - L2 LINE L2 -564 2750 2658 211 285 77 77 chr1 186004965 186005098 -56659255 - L2 LINE L2 -94 3219 3084 1961 138 47 0 chr1 186005098 186005395 -56658958 + AluSq SINE Alu 1 311 -2 211 285 77 77 chr1 186005395 186005468 -56658885 - L2 LINE L2 -228 3085 3013 487 361 84 33 chr1 186005628 186006417 -56657936 - L2 LINE L2 -941 2373 1545 1908 132 32 3 chr1 186007097 186007408 -56656945 + L1PB2 LINE L1 5824 6143 -8 286 158 9 140 chr1 186007488 186007602 -56656751 + L1MB3 LINE L1 5328 5426 -933 1281 184 30 4 chr1 186007631 186007902 -56656451 + L1MB3 LINE L1 5791 6068 -115 330 248 13 32 chr1 186007956 186008113 -56656240 + HAL1 LINE L1 1022 1175 -1332 25 51 0 0 chr1 186008128 186008167 -56656186 + AT_rich Low_complexity Low_complexity 1 39 0 219 312 204 13 chr1 186008277 186008434 -56655919 + MIR SINE MIR 74 260 -2 470 308 39 85 chr1 186009228 186009663 -56654690 - MLT1K LTR MaLR 0 588 174 356 349 92 42 chr1 186010059 186010549 -56653804 - L2 LINE L2 -77 3195 2681 778 253 74 39 chr1 186010572 186010759 -56653594 + MIR SINE MIR 26 224 -38 1594 131 15 18 chr1 186010759 186011033 -56653320 + L1PA16 LINE L1 5894 6166 0 778 253 74 39 chr1 186011033 186011074 -56653279 + MIR SINE MIR 224 262 0 217 239 0 0 chr1 186011075 186011121 -56653232 - L2 LINE L2 -6 3307 3262 501 299 99 32 chr1 186011282 186011438 -56652915 + MIR SINE MIR 26 203 -59 219 114 0 0 chr1 186011438 186011473 -56652880 + (TATG)n Simple_repeat Simple_repeat 2 36 0 501 299 99 32 chr1 186011473 186011537 -56652816 + MIR SINE MIR 203 261 -1 21 57 0 0 chr1 186011908 186011943 -56652410 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr1 186012778 186012820 -56651533 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 186012975 186013000 -56651353 + AT_rich Low_complexity Low_complexity 1 25 0 651 148 89 77 chr1 186013324 186013493 -56650860 + L1PB4 LINE L1 5983 6153 -3 1963 147 9 31 chr1 186013834 186014153 -56650200 - AluJb SINE Alu 0 312 1 181 337 11 45 chr1 186014316 186014405 -56649948 + L2 LINE L2 2999 3084 -188 261 270 0 0 chr1 186015854 186015917 -56648436 + MLT1L LTR MaLR 9 71 -544 429 299 123 19 chr1 186015955 186016280 -56648073 + MLT1L LTR MaLR 162 520 -95 218 348 0 0 chr1 186016827 186016896 -56647457 + MIR3 SINE MIR 130 198 -10 194 311 55 140 chr1 186018102 186018523 -56645830 + L2 LINE L2 2875 3259 -13 223 244 0 146 chr1 186018840 186018963 -56645390 - L2 LINE L2 0 3313 3209 279 306 112 65 chr1 186019107 186019339 -56645014 + MIR SINE MIR 20 262 0 1595 173 32 33 chr1 186019719 186020132 -56644221 + MLT1D LTR MaLR 22 500 -5 2838 147 34 11 chr1 186020147 186020683 -56643670 + L1MA9 LINE L1 5764 6311 -1 338 253 222 23 chr1 186020706 186020963 -56643390 - L2 LINE L2 -1039 2275 1968 22 0 0 0 chr1 186021583 186021605 -56642748 + AT_rich Low_complexity Low_complexity 1 22 0 229 299 30 0 chr1 186022358 186022425 -56641928 + L2 LINE L2 3245 3313 0 263 318 23 0 chr1 186022428 186022557 -56641796 + L2 LINE L2 959 1090 -2224 533 252 167 15 chr1 186022558 186023044 -56641309 - MLT1E3 LTR MaLR 0 624 1 827 262 101 58 chr1 186023856 186024234 -56640119 + L2 LINE L2 2199 2592 -722 307 328 45 8 chr1 186024284 186024418 -56639935 - L1MC/D LINE L1 -2025 5783 5645 812 284 57 104 chr1 186024425 186024575 -56639778 + L2 LINE L2 2606 2761 -552 290 146 0 0 chr1 186024575 186024616 -56639737 - 5S rRNA rRNA -79 42 2 812 284 57 104 chr1 186024616 186025124 -56639229 + L2 LINE L2 2761 3272 -41 207 69 0 0 chr1 186025124 186025153 -56639200 + (TATG)n Simple_repeat Simple_repeat 2 30 0 812 284 57 104 chr1 186025153 186025182 -56639171 + L2 LINE L2 3272 3301 -12 628 288 151 5 chr1 186025161 186025380 -56638973 - MIR SINE MIR -10 252 2 * 204 191 0 24 chr1 186025380 186025419 -56638934 - L3 LINE CR1 -1272 305 268 241 128 0 0 chr1 186025385 186025424 -56638929 + L2 LINE L2 3274 3312 -1 378 287 133 33 chr1 186026166 186026316 -56638037 + MIR SINE MIR 22 186 -76 460 293 114 63 chr1 186026497 186026814 -56637539 - MLT1J LTR MaLR -12 499 167 325 286 36 18 chr1 186027095 186027207 -56637146 - MLT1J LTR MaLR -334 177 64 304 370 101 25 chr1 186027469 186027877 -56636476 + L2 LINE L2 1872 2310 -1004 261 263 84 62 chr1 186027905 186028084 -56636269 - L1ME3A LINE L1 -15 6155 5973 516 241 62 11 chr1 186028397 186028620 -56635733 - L1MDa LINE L1 -3904 2636 2434 2037 154 28 6 chr1 186028620 186028976 -56635377 + MLT1A1 LTR MaLR 1 364 -1 47 15 0 15 chr1 186029363 186029374 -56634979 + AT_rich Low_complexity Low_complexity 1 11 -53 2461 170 75 2 chr1 186029374 186029867 -56634486 - L1MA9 LINE L1 -9 7263 6735 47 15 0 15 chr1 186029867 186029920 -56634433 + AT_rich Low_complexity Low_complexity 11 64 0 233 119 24 0 chr1 186029939 186029981 -56634372 + (CA)n Simple_repeat Simple_repeat 2 44 0 1110 164 0 0 chr1 186029983 186030160 -56634193 - L1MA9 LINE L1 -513 6738 6562 27 0 0 0 chr1 186030164 186030191 -56634162 + AT_rich Low_complexity Low_complexity 1 27 0 2233 101 0 3 chr1 186030193 186030480 -56633873 - AluSx SINE Alu -26 286 1 786 177 0 0 chr1 186030488 186030612 -56633741 - AluJb SINE Alu -188 124 1 2237 141 31 17 chr1 186030612 186031268 -56633085 - L1MA9 LINE L1 -683 6568 5903 1145 166 0 0 chr1 186031262 186031461 -56632892 - L1MA9 LINE L1 -1512 5594 5396 * 390 179 26 0 chr1 186031463 186031541 -56632812 - L1MA9 LINE L1 -1849 5257 5178 1532 131 146 19 chr1 186031560 186031828 -56632525 + AluSx SINE Alu 1 302 0 680 338 60 19 chr1 186031831 186032195 -56632158 - MER93a LTR ERV1 -4 398 20 3979 189 20 27 chr1 186032215 186033091 -56631262 - L1MA9 LINE L1 -1925 5181 4312 424 163 62 16 chr1 186033093 186033222 -56631131 - L1MA9 LINE L1 -2912 4194 4060 1183 235 8 0 chr1 186033266 186033521 -56630832 - L1MA9 LINE L1 -6712 318 62 268 26 0 0 chr1 186033529 186033568 -56630785 - L1MA3 LINE L1 0 6305 6267 2337 110 3 0 chr1 186033581 186033891 -56630462 - AluSx SINE Alu -1 311 1 370 192 29 0 chr1 186033892 186033966 -56630387 - L1MA9 LINE L1 -6072 965 1 948 90 0 0 chr1 186034036 186034158 -56630195 - THE1C LTR MaLR -1 374 253 2305 48 0 0 chr1 186034158 186034428 -56629925 + AluY SINE Alu 1 270 -41 395 211 99 43 chr1 186034528 186034689 -56629664 - LTR33 LTR ERVL -16 505 336 2984 37 19 8 chr1 186034993 186035370 -56628983 - L1PA5 LINE L1 0 6154 5774 240 59 0 0 chr1 186035379 186035413 -56628940 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2651 148 46 2 chr1 186035465 186035897 -56628456 - MER66A LTR ERV1 -1 477 27 562 265 50 35 chr1 186036316 186036714 -56627639 + L1MC5 LINE L1 7272 7564 -397 986 264 114 35 chr1 186036782 186037237 -56627116 + LTR16C LTR ERVL 1 491 0 257 279 82 33 chr1 186037340 186037462 -56626891 + MIR SINE MIR 28 155 -107 828 149 12 25 chr1 186038110 186038271 -56626082 - L1PA7 LINE L1 -3 6151 5993 719 147 9 0 chr1 186038659 186038775 -56625578 + MER3 DNA MER1_type 1 117 -92 749 276 40 36 chr1 186038834 186039084 -56625269 + MIR SINE MIR 2 252 -10 22 0 0 0 chr1 186039094 186039116 -56625237 + AT_rich Low_complexity Low_complexity 1 22 0 206 62 31 0 chr1 186039203 186039235 -56625118 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2249 79 3 36 chr1 186039323 186039628 -56624725 + AluSp SINE Alu 1 295 -18 2766 114 28 23 chr1 186043290 186043719 -56620634 + Tigger2a DNA MER2_type 3 433 -1 24 0 0 0 chr1 186043719 186043743 -56620610 + AT_rich Low_complexity Low_complexity 1 24 0 1679 189 14 27 chr1 186043743 186044067 -56620286 - L1PA16 LINE L1 -16 6150 5823 210 37 0 0 chr1 186044067 186044094 -56620259 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2316 89 0 0 chr1 186044094 186044385 -56619968 - AluSg SINE Alu -19 291 1 1679 189 14 27 chr1 186044385 186044430 -56619923 - L1PA16 LINE L1 -341 5825 5785 4484 163 18 4 chr1 186044490 186045804 -56618549 - L1PA16 LINE L1 -370 5786 4456 344 272 149 0 chr1 186045814 186045928 -56618425 + MIR SINE MIR 48 178 -84 229 238 16 16 chr1 186045992 186046055 -56618298 + MIR SINE MIR 189 251 -11 22 0 0 0 chr1 186046159 186046181 -56618172 + AT_rich Low_complexity Low_complexity 1 22 0 759 290 128 45 chr1 186046316 186046823 -56617530 - MLT1G LTR MaLR 0 590 42 228 200 0 100 chr1 186046908 186046988 -56617365 - L2 LINE L2 -65 3248 3177 265 353 17 25 chr1 186047061 186047180 -56617173 + MIR3 SINE MIR 42 159 -49 27 0 0 0 chr1 186047389 186047416 -56616937 + AT_rich Low_complexity Low_complexity 1 27 0 1451 161 92 0 chr1 186047450 186047723 -56616630 + MER2 DNA MER2_type 48 345 0 22 35 0 0 chr1 186047772 186047801 -56616552 + AT_rich Low_complexity Low_complexity 1 29 0 233 206 65 0 chr1 186047818 186047910 -56616443 + (TA)n Simple_repeat Simple_repeat 1 98 0 198 302 0 35 chr1 186048734 186048820 -56615533 - MIR SINE MIR -121 141 59 1270 247 121 27 chr1 186048823 186049270 -56615083 + MER45C DNA AcHobo 372 953 0 1927 180 85 16 chr1 186049414 186049837 -56614516 + MER66A LTR ERV1 27 478 0 787 232 68 81 chr1 186051350 186051794 -56612559 - LTR16A1 LTR ERVL 0 457 20 2305 154 15 0 chr1 186051856 186052253 -56612100 + MER57A LTR ERV1 1 403 0 1722 156 28 0 chr1 186052360 186052649 -56611704 + AluJb SINE Alu 13 309 -3 246 253 40 0 chr1 186053344 186053419 -56610934 - L1M4 LINE L1 -370 5808 5731 205 339 0 16 chr1 186054708 186054770 -56609583 - MIR SINE MIR -149 113 53 454 285 61 83 chr1 186054893 186055219 -56609134 + L2 LINE L2 2890 3208 -105 263 395 9 0 chr1 186055283 186055397 -56608956 + L2 LINE L2 3197 3311 -2 660 188 34 0 chr1 186056618 186056735 -56607618 - MER58A DNA MER1_type 0 166 46 242 330 29 10 chr1 186056810 186056913 -56607440 + L2 LINE L2 2425 2529 -785 * 525 306 117 25 chr1 186056906 186057187 -56607166 + L2 LINE L2 3001 3307 -6 4479 53 47 127 chr1 186057438 186058186 -56606167 - LTR12 LTR ERV1 0 688 1 1446 100 0 5 chr1 186058878 186059098 -56605255 + L1MA6 LINE L1 6082 6300 0 336 296 19 9 chr1 186060635 186060743 -56603610 - MIR3 SINE MIR -33 175 67 479 299 85 64 chr1 186061028 186061356 -56602997 + MER102b DNA MER1_type 1 335 -6 2321 82 7 0 chr1 186061418 186061710 -56602643 + AluSx SINE Alu 2 295 -17 3316 128 37 6 chr1 186061811 186062434 -56601919 + L1P5 LINE L1 2206 2890 -3973 * 12597 184 14 8 chr1 186062430 186064253 -56600100 + L1P5 LINE L1 3280 5137 -1730 594 0 0 0 chr1 186064253 186064319 -56600034 + (TAAAA)n Simple_repeat Simple_repeat 2 67 0 12597 184 14 8 chr1 186064319 186065700 -56598653 + L1P5 LINE L1 5137 6507 -360 393 117 0 0 chr1 186065701 186065761 -56598592 + (CA)n Simple_repeat Simple_repeat 2 61 0 227 73 49 0 chr1 186065780 186065821 -56598532 - LTR66 LTR ERVL -170 440 398 313 322 0 0 chr1 186065845 186065935 -56598418 - L1MC4 LINE L1 -1339 6703 6614 351 0 0 0 chr1 186065964 186066003 -56598350 + (TA)n Simple_repeat Simple_repeat 1 39 0 2327 123 3 6 chr1 186066006 186066364 -56597989 + L1PB1 LINE L1 5794 6150 -1 1893 155 3 3 chr1 186066625 186066922 -56597431 + AluSx SINE Alu 1 297 -15 354 179 30 0 chr1 186067447 186067514 -56596839 + MER20 DNA MER1_type 4 72 -147 709 191 8 0 chr1 186067699 186067825 -56596528 + MER20 DNA MER1_type 93 219 0 296 242 0 0 chr1 186067987 186068049 -56596304 - L2 LINE L2 -1 3312 3251 21 0 0 0 chr1 186069082 186069103 -56595250 + AT_rich Low_complexity Low_complexity 1 21 0 2001 310 172 48 chr1 186069996 186071632 -56592721 - L2 LINE L2 -351 2963 1111 1851 112 65 24 chr1 186071632 186071926 -56592427 + AluSx SINE Alu 1 306 -6 2001 310 172 48 chr1 186071926 186071974 -56592379 - L2 LINE L2 -2203 1111 1070 605 244 31 19 chr1 186071983 186072143 -56592210 - MER97a DNA MER1_type? -731 163 2 235 220 0 34 chr1 186072299 186072358 -56591995 - MIR SINE MIR -111 151 95 660 222 32 53 chr1 186072735 186072752 -56591601 - Charlie1 DNA MER1_type -2576 185 169 240 86 0 0 chr1 186072752 186072787 -56591566 + (TG)n Simple_repeat Simple_repeat 2 36 0 660 222 32 53 chr1 186072787 186072958 -56591395 - Charlie1 DNA MER1_type -2592 169 1 451 310 32 32 chr1 186072997 186073213 -56591140 + MER34 LTR ERV1 1 216 -326 529 286 39 59 chr1 186073240 186073495 -56590858 + MER34 LTR ERV1 291 540 -2 769 249 53 83 chr1 186073497 186073811 -56590542 - L1ME LINE L1 -546 5618 5296 1459 131 55 4 chr1 186073811 186074085 -56590268 - L1MA9 LINE L1 -7 6305 6018 769 249 53 83 chr1 186074085 186074425 -56589928 - L1ME LINE L1 -868 5296 4957 312 91 0 0 chr1 186074428 186074472 -56589881 + (TG)n Simple_repeat Simple_repeat 1 44 0 251 170 90 70 chr1 186074637 186074737 -56589616 - LTR66 LTR ERVL -166 444 343 22 0 0 0 chr1 186074744 186074766 -56589587 + AT_rich Low_complexity Low_complexity 1 22 0 3064 122 15 81 chr1 186074766 186075021 -56589332 - L1MA3 LINE L1 -6 6299 6029 1537 200 3 17 chr1 186075021 186075316 -56589037 - AluJo SINE Alu -21 291 1 3064 122 15 81 chr1 186075316 186075668 -56588685 - L1MA3 LINE L1 -276 6029 5732 21 36 0 0 chr1 186075754 186075782 -56588571 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr1 186075888 186075923 -56588430 + AT_rich Low_complexity Low_complexity 1 35 0 1841 180 0 3 chr1 186078860 186079149 -56585204 - AluSx SINE Alu -20 292 5 1145 207 4 17 chr1 186079958 186080190 -56584163 + L1MD3 LINE L1 7433 7661 -334 273 281 125 0 chr1 186081286 186081382 -56582971 + MIR SINE MIR 48 155 -107 * 1198 284 256 17 chr1 186081378 186082309 -56582044 - L2 LINE L2 -811 2503 1301 2240 112 0 0 chr1 186082309 186082603 -56581750 + AluSg SINE Alu 4 297 -13 1198 284 256 17 chr1 186082603 186082704 -56581649 - L2 LINE L2 -2013 1301 1225 474 320 153 53 chr1 186082960 186083670 -56580683 + L2 LINE L2 2304 3062 -251 233 299 94 26 chr1 186083680 186083797 -56580556 + L2 LINE L2 3188 3312 -1 712 230 132 17 chr1 186083904 186084139 -56580214 + MIR SINE MIR 1 262 0 6556 180 35 16 chr1 186084310 186086868 -56577485 + L1MC1 LINE L1 3725 6331 -2 4263 102 18 8 chr1 186087854 186088460 -56575893 + LTR9 LTR ERV1 1 612 0 189 289 0 0 chr1 186088528 186088580 -56575773 - MIR SINE MIR -97 165 114 1259 208 65 7 chr1 186089665 186089835 -56574518 - AluJo SINE Alu -17 295 101 2168 47 0 50 chr1 186089835 186090134 -56574219 - L1PA4 LINE L1 -2 6153 5870 1259 208 65 7 chr1 186090134 186090242 -56574111 - AluJo SINE Alu -211 101 1 270 303 66 0 chr1 186091154 186091230 -56573123 - L2 LINE L2 0 3272 3192 2488 81 0 0 chr1 186091231 186091540 -56572813 + AluY SINE Alu 2 310 -1 4038 129 62 90 chr1 186092344 186093190 -56571163 - LTR12 LTR ERV1 0 826 5 625 192 42 12 chr1 186093206 186093373 -56570980 - pTR5 LTR ERV1 -1094 1344 1173 2350 100 0 0 chr1 186093616 186093925 -56570428 + AluSc SINE Alu 1 309 0 23 78 0 0 chr1 186094307 186094358 -56569995 + AT_rich Low_complexity Low_complexity 1 51 0 377 190 174 16 chr1 186095240 186095361 -56568992 - MIR SINE MIR 0 262 123 184 333 0 0 chr1 186095577 186095634 -56568719 + L2 LINE L2 3252 3308 -5 2358 94 0 0 chr1 186095795 186096102 -56568251 - AluY SINE Alu -4 307 1 1913 112 40 14 chr1 186098321 186098598 -56565755 + AluSq SINE Alu 1 284 -29 189 0 0 0 chr1 186099828 186099849 -56564504 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr1 186100519 186100540 -56563813 + AT_rich Low_complexity Low_complexity 1 21 0 548 275 42 79 chr1 186100936 186101176 -56563177 + MIR SINE MIR 32 262 0 438 323 97 47 chr1 186101457 186101819 -56562534 + L1ME LINE L1 619 998 -5636 1150 71 0 13 chr1 186102128 186102282 -56562071 + AluY SINE Alu 159 310 -1 962 264 98 55 chr1 186102332 186103140 -56561213 + L1ME LINE L1 1019 1881 -4763 1311 198 37 4 chr1 186103164 186103432 -56560921 + AluJo SINE Alu 6 282 -30 666 276 74 52 chr1 186103453 186103899 -56560454 + L1ME LINE L1 1943 2398 -4427 223 226 19 0 chr1 186104160 186104213 -56560140 + (TA)n Simple_repeat Simple_repeat 2 55 0 1499 160 58 26 chr1 186104444 186104756 -56559597 - L1MA7 LINE L1 -4 6287 5966 1952 112 75 19 chr1 186104785 186105296 -56559057 - MER51A LTR ERV1 -16 618 1 963 126 126 0 chr1 186105296 186105463 -56558890 - L1MA7 LINE L1 -321 5970 5783 216 158 0 0 chr1 186105464 186105502 -56558851 + (TA)n Simple_repeat Simple_repeat 1 38 0 22 80 0 0 chr1 186105611 186105661 -56558692 + AT_rich Low_complexity Low_complexity 1 50 0 401 302 20 28 chr1 186105877 186106048 -56558305 + MER5B DNA MER1_type 8 166 -12 345 304 87 35 chr1 186106469 186106755 -56557598 - L1MC4 LINE L1 -140 7902 7602 194 324 29 0 chr1 186106936 186107004 -56557349 - L2 LINE L2 -18 3295 3226 1822 205 12 0 chr1 186107522 186107863 -56556490 + MER7A DNA MER2_type 3 345 -1 2202 107 10 0 chr1 186108151 186108451 -56555902 + AluSg SINE Alu 1 303 -7 512 277 134 9 chr1 186108571 186108802 -56555551 - MIR SINE MIR 0 262 3 468 139 0 0 chr1 186109275 186109354 -56554999 + (TC)n Simple_repeat Simple_repeat 2 80 0 378 42 0 0 chr1 186109354 186109402 -56554951 + (CA)n Simple_repeat Simple_repeat 1 48 0 2389 79 0 31 chr1 186109973 186110291 -56554062 + AluSq SINE Alu 1 308 -5 478 242 14 28 chr1 186110589 186110751 -56553602 + L1MA10 LINE L1 6007 6325 -5 1606 212 30 27 chr1 186111480 186111853 -56552500 + MLT1A2 LTR MaLR 1 374 0 1070 145 0 0 chr1 186112637 186112796 -56551557 - FRAM SINE Alu -7 159 1 461 47 16 0 chr1 186113592 186113656 -56550697 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 269 252 87 10 chr1 186115003 186115106 -56549247 + MIR SINE MIR 22 132 -130 1493 187 40 43 chr1 186115324 186115698 -56548655 - MLT1A2 LTR MaLR 0 374 2 579 244 181 9 chr1 186116043 186116208 -56548145 + MIR SINE MIR 4 218 -44 219 88 0 0 chr1 186116208 186116242 -56548111 + (CA)n Simple_repeat Simple_repeat 2 35 0 579 244 181 9 chr1 186116242 186116297 -56548056 + MIR SINE MIR 218 262 0 2116 101 27 7 chr1 186118085 186118382 -56545971 - AluSq SINE Alu -8 305 3 295 296 144 0 chr1 186118642 186118767 -56545586 - MIR SINE MIR -119 143 1 192 77 0 0 chr1 186119041 186119067 -56545286 + (TTATA)n Simple_repeat Simple_repeat 1 26 0 30 59 0 0 chr1 186119306 186119357 -56544996 + AT_rich Low_complexity Low_complexity 1 51 0 418 303 38 54 chr1 186119358 186119544 -56544809 - MIR SINE MIR -57 151 20 801 203 25 6 chr1 186119881 186120044 -56544309 + FAM SINE Alu 1 166 -9 493 303 69 5 chr1 186120681 186120869 -56543484 - MIR SINE MIR -32 230 31 2429 61 0 0 chr1 186121303 186121596 -56542757 + AluY SINE Alu 1 293 -18 24 0 0 0 chr1 186122641 186122665 -56541688 + AT_rich Low_complexity Low_complexity 1 24 0 2361 89 0 7 chr1 186123131 186123434 -56540919 - AluY SINE Alu -10 301 1 3193 261 68 34 chr1 186123438 186124807 -56539546 - L1M1 LINE L1 -4139 3426 2011 7256 160 21 20 chr1 186124821 186125096 -56539257 - L1 LINE L1 -2312 5253 4980 3102 140 8 14 chr1 186125096 186125610 -56538743 - MER75 DNA T2_type -2 512 2 7256 160 21 20 chr1 186125610 186128056 -56536297 - L1 LINE L1 -2585 4980 2540 15035 153 29 30 chr1 186128578 186131141 -56533212 - L1 LINE L1 -4994 2571 12 1569 239 9 11 chr1 186131717 186132072 -56532281 - MLT1A1 LTR MaLR -2 455 10 303 312 47 59 chr1 186132351 186132604 -56531749 + L1M4c LINE L1 971 1220 -5164 22 35 0 0 chr1 186132632 186132661 -56531692 + AT_rich Low_complexity Low_complexity 1 29 0 1046 223 66 4 chr1 186132700 186132942 -56531411 - MLT1F1 LTR MaLR -3 564 308 336 298 48 60 chr1 186133188 186133356 -56530997 + HAL1b LINE L1 1176 1341 -7 501 100 62 0 chr1 186134261 186134341 -56530012 + L1PA11 LINE L1 6089 6173 -1 410 329 61 0 chr1 186134938 186135102 -56529251 - MER91A DNA MER1_type -22 174 1 2038 138 3 0 chr1 186135786 186136077 -56528276 + AluSx SINE Alu 1 292 -20 1130 157 42 65 chr1 186136736 186136997 -56527356 - MLT1B LTR MaLR -54 336 82 686 162 15 17 chr1 186137034 186137170 -56527183 - MLT2B1 LTR ERVL -215 199 90 419 155 0 155 chr1 186137220 186137323 -56527030 - MLT1B LTR MaLR -303 87 1 519 17 0 0 chr1 186137857 186137917 -56526436 + (CA)n Simple_repeat Simple_repeat 2 61 0 473 360 53 31 chr1 186137928 186138436 -56525917 + L2 LINE L2 2262 2780 -534 483 133 35 0 chr1 186138657 186138770 -56525583 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 270 176 0 0 chr1 186138782 186138833 -56525520 + (TA)n Simple_repeat Simple_repeat 1 51 0 2135 219 26 11 chr1 186138844 186139300 -56525053 - MLT2B1 LTR ERVL -57 463 1 3216 155 18 20 chr1 186139601 186140201 -56524152 + L1MA4 LINE L1 5695 6293 -7 3803 177 27 24 chr1 186140590 186141296 -56523057 + MER44D DNA MER2_type 1 580 -25 1629 136 0 4 chr1 186141677 186141912 -56522441 - AluSx SINE Alu -20 292 59 614 186 0 0 chr1 186141912 186142009 -56522344 - AluS SINE Alu -212 100 4 230 329 13 0 chr1 186142034 186142113 -56522240 + MIR SINE MIR 123 202 -60 32 75 0 0 chr1 186143370 186143437 -56520916 + AT_rich Low_complexity Low_complexity 1 67 0 495 359 48 0 chr1 186143788 186143997 -56520356 + MIR SINE MIR 14 232 -30 311 317 119 13 chr1 186144594 186144821 -56519532 + MIR SINE MIR 2 252 -10 1690 144 65 0 chr1 186145584 186145861 -56518492 + AluJb SINE Alu 1 295 -17 180 0 0 0 chr1 186145928 186145948 -56518405 + (T)n Simple_repeat Simple_repeat 1 20 0 962 203 52 19 chr1 186146565 186146777 -56517576 + MER20 DNA MER1_type 1 219 0 1509 184 10 31 chr1 186146848 186147003 -56517350 - AluJb SINE Alu -24 288 140 2173 104 0 36 chr1 186147003 186147311 -56517042 - AluSx SINE Alu -13 299 3 1509 184 10 31 chr1 186147311 186147449 -56516904 - AluJb SINE Alu -172 140 1 1802 187 34 13 chr1 186147949 186148314 -56516039 - MLT1A1 LTR MaLR 0 428 1 510 353 24 5 chr1 186148849 186149056 -56515297 - MIR SINE MIR -4 258 48 2239 104 3 10 chr1 186149493 186149792 -56514561 - AluSp SINE Alu -16 297 1 1208 126 21 63 chr1 186150141 186150380 -56513973 + THE1B LTR MaLR 136 364 0 351 93 37 0 chr1 186150380 186150434 -56513919 + THE1B-int LTR MaLR 1 56 -1524 * 10057 105 8 5 chr1 186150431 186151816 -56512537 + THE1B-int LTR MaLR 192 1580 0 2290 101 51 28 chr1 186151817 186152172 -56512181 + THE1B LTR MaLR 2 364 0 481 291 29 29 chr1 186152172 186152347 -56512006 + MER110 LTR ERV1 305 479 -12 211 299 52 0 chr1 186152385 186152462 -56511891 - MIR SINE MIR -94 168 88 1107 167 72 14 chr1 186152796 186152856 -56511497 + MER106A DNA MER1_type 2 57 -179 243 0 0 0 chr1 186152856 186152883 -56511470 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1107 167 72 14 chr1 186152883 186153044 -56511309 + MER106A DNA MER1_type 57 236 0 3749 115 39 7 chr1 186154290 186154881 -56509472 - MER4B LTR ERV1 0 610 1 415 157 0 0 chr1 186155048 186155118 -56509235 - L1MA9 LINE L1 -375 5937 5868 * 693 253 75 43 chr1 186155103 186155451 -56508902 + L1MA9 LINE L1 5914 6272 -40 488 250 242 8 chr1 186155605 186155853 -56508500 - L2 LINE L2 -88 3225 2920 24073 84 10 6 chr1 186155872 186159181 -56505172 + L1PA5 LINE L1 2 3324 -2818 14227 53 3 0 chr1 186159181 186161767 -56502586 + L1PA5 LINE L1 3565 6154 0 1303 272 61 51 chr1 186161804 186162395 -56501958 - L2 LINE L2 -404 2910 2314 675 296 5 15 chr1 186163030 186163236 -56501117 + MIR SINE MIR 57 260 -2 200 366 15 8 chr1 186164761 186164892 -56499461 - L2 LINE L2 -753 2561 2430 222 219 12 110 chr1 186164898 186164980 -56499373 - L2 LINE L2 -2 3311 3238 273 295 63 48 chr1 186165234 186165441 -56498912 + MIR SINE MIR 47 256 -6 444 325 35 15 chr1 186165978 186166181 -56498172 + MIR SINE MIR 29 235 -27 211 316 38 0 chr1 186167353 186167432 -56496921 + MIR SINE MIR 120 201 -61 547 158 4 161 chr1 186168438 186168683 -56495670 - L1M LINE L1 -801 5345 5152 1811 195 43 0 chr1 186168805 186169175 -56495178 - L1 LINE L1 -994 5152 4767 * 4311 136 13 70 chr1 186169173 186169691 -56494662 + L1MB1 LINE L1 5349 5802 -366 1879 145 0 14 chr1 186169691 186169988 -56494365 + AluJb SINE Alu 1 293 -19 4311 136 13 70 chr1 186169988 186170318 -56494035 + L1MB1 LINE L1 5802 6149 -19 276 30 0 0 chr1 186170318 186170351 -56494002 + (CA)n Simple_repeat Simple_repeat 2 34 0 438 347 77 22 chr1 186170415 186170689 -56493664 + L2 LINE L2 3025 3313 0 298 231 46 37 chr1 186170985 186171093 -56493260 + L2 LINE L2 2369 2477 -837 431 308 0 77 chr1 186171251 186171420 -56492933 - MIR SINE MIR -86 176 21 30 27 0 0 chr1 186172481 186172518 -56491835 + AT_rich Low_complexity Low_complexity 1 37 0 35 41 0 0 chr1 186172643 186172692 -56491661 + AT_rich Low_complexity Low_complexity 1 49 0 240 196 65 0 chr1 186173046 186173092 -56491261 - MIR3 SINE MIR -45 163 115 2087 130 36 33 chr1 186173480 186173841 -56490512 - THE1B LTR MaLR 0 364 3 333 0 0 0 chr1 186173872 186173909 -56490444 + (TG)n Simple_repeat Simple_repeat 2 38 0 204 179 0 0 chr1 186175281 186175320 -56489033 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 36347 95 12 9 chr1 186175629 186181756 -56482597 + L1PA6 LINE L1 11 6151 -3 3542 170 28 33 chr1 186181825 186182229 -56482124 - L1MA9 LINE L1 -6 6306 5906 2374 100 0 0 chr1 186182229 186182538 -56481815 - AluSg SINE Alu -1 309 1 3542 170 28 33 chr1 186182538 186182884 -56481469 - L1MA9 LINE L1 -406 5906 5560 2385 100 0 0 chr1 186183147 186183456 -56480897 + AluSc SINE Alu 1 309 0 309 320 0 0 chr1 186183477 186183574 -56480779 - MIR3 SINE MIR -15 193 97 27 0 0 0 chr1 186183738 186183765 -56480588 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 186184357 186184378 -56479975 + AT_rich Low_complexity Low_complexity 1 21 0 507 282 128 32 chr1 186186114 186186302 -56478051 + MIR SINE MIR 31 236 -26 584 135 36 9 chr1 186187571 186187682 -56476671 - L1MA10 LINE L1 -35 6299 6186 201 159 0 0 chr1 186188330 186188374 -56475979 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 236 100 25 0 chr1 186188808 186188848 -56475505 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 779 330 29 7 chr1 186189082 186189388 -56474965 + MLT1I LTR MaLR 64 376 -33 24 32 0 0 chr1 186190285 186190316 -56474037 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr1 186190360 186190409 -56473944 + AT_rich Low_complexity Low_complexity 1 49 0 31 88 0 0 chr1 186190529 186190609 -56473744 + AT_rich Low_complexity Low_complexity 1 80 0 1788 42 0 0 chr1 186190614 186190831 -56473522 - L1PA5 LINE L1 -7 6147 5931 234 139 0 0 chr1 186190870 186190913 -56473440 - L1ME4a LINE L1 -111 6010 5968 617 246 84 42 chr1 186191076 186191385 -56472968 - L1ME4a LINE L1 -299 5822 5501 208 386 89 42 chr1 186192221 186192480 -56471873 - L2 LINE L2 -193 3079 2809 2177 107 27 0 chr1 186192730 186193030 -56471323 - AluSq SINE Alu -1 312 5 5450 169 105 32 chr1 186193131 186194311 -56470042 + MER52C LTR ERV1 13 1278 0 388 317 138 6 chr1 186194505 186194672 -56469681 + MIR3 SINE MIR 19 207 -1 259 279 0 0 chr1 186194675 186194736 -56469617 + MIR3 SINE MIR 138 198 -10 635 289 75 25 chr1 186194834 186195073 -56469280 + MIR SINE MIR 12 262 0 830 306 34 0 chr1 186195549 186195784 -56468569 - MIR SINE MIR 0 262 20 613 346 189 30 chr1 186195978 186196094 -56468259 + L2 LINE L2 2282 2378 -894 1756 209 27 16 chr1 186196094 186196462 -56467891 + MLT1A2 LTR MaLR 1 372 -2 613 346 189 30 chr1 186196462 186197199 -56467154 + L2 LINE L2 2378 3263 -9 1632 262 60 87 chr1 186197549 186198099 -56466254 + MER21B LTR ERV1 22 550 -313 6073 55 18 13 chr1 186198099 186198875 -56465478 + LTR17 LTR ERV1 1 780 0 1632 262 60 87 chr1 186198875 186199035 -56465318 + MER21B LTR ERV1 550 713 -150 290 255 145 50 chr1 186200756 186200956 -56463397 - L1ME4a LINE L1 0 6121 5903 2122 145 0 23 chr1 186201631 186201975 -56462378 - MER1B DNA MER1_type 0 337 2 356 348 10 93 chr1 186202261 186202382 -56461971 + L2 LINE L2 2564 2693 -621 2279 86 6 49 chr1 186202382 186202706 -56461647 - AluSg SINE Alu 0 310 1 356 348 10 93 chr1 186202706 186202886 -56461467 + L2 LINE L2 2693 2840 -474 1065 161 5 5 chr1 186202955 186203148 -56461205 - L1PB1 LINE L1 0 6151 5959 21 0 0 0 chr1 186203288 186203309 -56461044 + AT_rich Low_complexity Low_complexity 1 21 0 359 158 61 0 chr1 186203315 186203480 -56460873 + (TA)n Simple_repeat Simple_repeat 1 175 0 38 61 0 0 chr1 186203480 186203546 -56460807 + AT_rich Low_complexity Low_complexity 1 66 0 282 130 62 12 chr1 186203552 186203602 -56460751 + (TA)n Simple_repeat Simple_repeat 2 48 -122 198 0 0 0 chr1 186203602 186203624 -56460729 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 282 130 62 12 chr1 186203624 186203734 -56460619 + (TA)n Simple_repeat Simple_repeat 48 170 0 3755 61 2 0 chr1 186203739 186204216 -56460137 - L1PA8 LINE L1 -8 6164 5687 287 286 9 9 chr1 186204344 186204449 -56459904 - Charlie8 DNA MER1_type -1945 472 368 195 343 41 0 chr1 186204830 186204903 -56459450 + L2 LINE L2 2978 3053 -219 626 235 65 18 chr1 186205029 186205199 -56459154 - L2 LINE L2 0 3313 3136 920 235 120 79 chr1 186205271 186205291 -56459062 - MLT1I LTR MaLR -2 407 389 889 181 32 92 chr1 186205291 186205540 -56458813 - MER106A DNA MER1_type -1 235 2 920 235 120 79 chr1 186205540 186205910 -56458443 - MLT1I LTR MaLR -20 389 1 183 324 162 48 chr1 186205944 186206049 -56458304 - MIR3 SINE MIR -77 131 15 193 294 213 29 chr1 186206475 186206611 -56457742 - MIR3 SINE MIR -33 175 15 351 308 0 19 chr1 186207172 186207279 -56457074 - MIR SINE MIR -125 137 33 21 0 0 0 chr1 186208779 186208800 -56455553 + AT_rich Low_complexity Low_complexity 1 21 0 848 142 0 176 chr1 186209306 186209539 -56454814 + 7SK RNA RNA 2 193 0 203 360 70 30 chr1 186209948 186210048 -56454305 + L2 LINE L2 3169 3272 0 406 280 93 20 chr1 186210048 186210198 -56454155 + MIR3 SINE MIR 20 180 -28 274 310 62 18 chr1 186210548 186210661 -56453692 + L2 LINE L2 3175 3292 -21 233 305 76 38 chr1 186210679 186210784 -56453569 - MIR SINE MIR -81 127 19 286 283 36 42 chr1 186212227 186212393 -56451960 + L1ME LINE L1 5615 5779 -342 1099 271 97 29 chr1 186213002 186213345 -56451008 + LTR16C LTR ERVL 50 427 -64 2115 139 116 13 chr1 186213345 186213733 -56450620 - MSTA LTR MaLR 0 428 1 1099 271 97 29 chr1 186213733 186213803 -56450550 + LTR16C LTR ERVL 427 491 0 1717 187 9 44 chr1 186213812 186214133 -56450220 - AluJo SINE Alu -2 310 1 272 163 0 0 chr1 186214271 186214314 -56450039 - U2 snRNA snRNA -145 43 1 221 207 0 86 chr1 186214364 186214422 -56449931 + L2 LINE L2 3177 3229 -84 795 130 16 0 chr1 186215002 186215125 -56449228 + FLAM_C SINE Alu 5 129 -4 481 299 14 14 chr1 186215657 186215801 -56448552 - MER5A DNA MER1_type -45 144 1 2150 104 7 0 chr1 186216566 186216855 -56447498 + AluSx SINE Alu 5 295 -17 1078 173 48 8 chr1 186217986 186218235 -56446118 + MER33 DNA MER1_type 55 313 -11 289 301 78 29 chr1 186218309 186218757 -56445596 - L1MC5 LINE L1 -176 7785 7316 2303 96 3 0 chr1 186219155 186219458 -56444895 + AluSq SINE Alu 1 304 -9 1986 114 40 0 chr1 186219469 186219777 -56444576 + AluSx SINE Alu 1 319 0 366 308 77 12 chr1 186219780 186219949 -56444404 - MIR SINE MIR -77 185 6 325 276 6 105 chr1 186220086 186220267 -56444086 - L2 LINE L2 -971 2343 2181 2357 42 3 3 chr1 186221348 186221658 -56442695 + AluY SINE Alu 1 310 0 446 312 50 14 chr1 186221982 186222123 -56442230 - MIR3 SINE MIR -47 161 16 196 30 61 0 chr1 186222214 186222247 -56442106 + (TA)n Simple_repeat Simple_repeat 1 35 0 351 0 0 0 chr1 186222249 186222288 -56442065 + (TC)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr1 186222287 186222308 -56442045 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 2064 150 0 3 chr1 186222308 186222615 -56441738 - AluJb SINE Alu -6 306 1 312 285 93 40 chr1 186222797 186222948 -56441405 + MIR SINE MIR 39 197 -65 374 260 49 8 chr1 186223475 186223598 -56440755 - MIR SINE MIR 0 262 135 2196 81 0 74 chr1 186223809 186224132 -56440221 - AluSq SINE Alu -14 299 1 235 345 198 15 chr1 186224413 186224610 -56439743 - MIR SINE MIR -1 261 29 40 0 0 0 chr1 186224777 186224817 -56439536 + AT_rich Low_complexity Low_complexity 1 40 0 228 35 0 0 chr1 186224830 186224859 -56439494 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1852 156 0 62 chr1 186225824 186226144 -56438209 - AluJb SINE Alu -12 300 1 23 86 0 0 chr1 186226190 186226248 -56438105 + AT_rich Low_complexity Low_complexity 1 58 0 352 250 18 71 chr1 186226776 186226888 -56437465 + MER5B DNA MER1_type 42 147 -31 6865 64 6 33 chr1 186226888 186227868 -56436485 - SVA Other Other 0 1386 433 5254 75 48 65 chr1 186227881 186228948 -56435405 - SVA Other Other -520 866 1 2241 121 0 0 chr1 186229486 186229793 -56434560 + AluSx SINE Alu 1 307 -5 2252 95 3 0 chr1 186229859 186230154 -56434199 + AluSx SINE Alu 1 296 -16 283 276 141 13 chr1 186231104 186231260 -56433093 - MER102b DNA MER1_type -37 304 129 3365 196 84 26 chr1 186231279 186232287 -56432066 + L1MC4 LINE L1 6971 8037 -5 1521 119 0 0 chr1 186234021 186234231 -56430122 - AluSg/x SINE Alu -17 293 84 363 337 161 6 chr1 186234345 186234698 -56429655 + L2 LINE L2 1442 1849 -1465 337 277 136 13 chr1 186235185 186235242 -56429111 + MIR SINE MIR 34 83 -179 2341 118 0 3 chr1 186235242 186235556 -56428797 - AluSq SINE Alu 0 313 1 337 277 136 13 chr1 186235556 186235653 -56428700 + MIR SINE MIR 83 207 -55 286 256 12 12 chr1 186235736 186235818 -56428535 + L2 LINE L2 3232 3313 0 332 281 34 0 chr1 186235840 186235929 -56428424 + MIR SINE MIR 157 248 -14 3053 279 98 40 chr1 186235986 186237689 -56426664 + L2 LINE L2 1515 3313 0 25 0 0 0 chr1 186238580 186238605 -56425748 + AT_rich Low_complexity Low_complexity 1 25 0 2104 91 7 44 chr1 186238879 186239200 -56425153 + AluSx SINE Alu 1 310 0 180 0 0 0 chr1 186239407 186239427 -56424926 + (CA)n Simple_repeat Simple_repeat 2 21 0 212 347 51 31 chr1 186239834 186239932 -56424421 + L2 LINE L2 3124 3223 -49 1960 145 3 0 chr1 186240766 186241048 -56423305 + AluJb SINE Alu 19 301 -11 22 0 0 0 chr1 186241320 186241342 -56423011 + AT_rich Low_complexity Low_complexity 1 22 0 536 330 79 23 chr1 186242633 186242975 -56421378 - L3 LINE CR1 -423 1154 794 268 231 142 83 chr1 186243180 186243372 -56420981 + MIR3 SINE MIR 6 203 -59 247 342 45 9 chr1 186243631 186243742 -56420611 + L2 LINE L2 2967 3081 -191 29 0 0 0 chr1 186244378 186244407 -56419946 + AT_rich Low_complexity Low_complexity 1 29 0 1147 46 0 13 chr1 186244407 186244558 -56419795 - L1PA5 LINE L1 -5 6149 6001 393 306 191 0 chr1 186244923 186245122 -56419231 - MIR SINE MIR -6 256 20 541 62 0 113 chr1 186245260 186245357 -56418996 + MER4D LTR ERV1 1 86 -786 568 111 0 0 chr1 186245358 186245464 -56418889 + AluSg/x SINE Alu 202 307 0 4690 140 11 25 chr1 186245464 186246300 -56418053 + MER4D LTR ERV1 80 903 0 399 283 60 18 chr1 186246448 186246614 -56417739 - MIR SINE MIR 0 262 90 431 140 0 75 chr1 186246624 186246717 -56417636 + MER5A DNA MER1_type 21 106 -83 265 310 101 39 chr1 186247045 186247174 -56417179 - L2 LINE L2 0 3272 3136 717 300 109 23 chr1 186247243 186247593 -56416760 - LTR16C LTR ERVL 0 491 112 2576 50 0 0 chr1 186247604 186247902 -56416451 + AluY SINE Alu 1 298 -13 1292 123 0 0 chr1 186248229 186248400 -56415953 - AluSg/x SINE Alu -14 298 128 241 246 43 14 chr1 186250484 186250553 -56413800 + CT-rich Low_complexity Low_complexity 5 75 0 2292 124 0 0 chr1 186251014 186251321 -56413032 - AluSx SINE Alu -5 307 1 407 289 10 10 chr1 186251469 186251573 -56412780 - MIR SINE MIR -144 118 15 2390 98 13 0 chr1 186251623 186251928 -56412425 - AluSg SINE Alu -1 309 1 366 200 63 0 chr1 186252336 186252431 -56411922 - LTR30 LTR ERV1 -95 627 527 604 274 126 32 chr1 186252453 186252763 -56411590 + MLT1J LTR MaLR 173 511 0 632 264 7 0 chr1 186252765 186252913 -56411440 - MIR SINE MIR -62 200 52 721 299 61 13 chr1 186253152 186253527 -56410826 - MLT1L LTR MaLR 0 615 223 349 361 103 5 chr1 186253891 186254085 -56410268 - L3 LINE CR1 -483 1094 882 507 95 0 0 chr1 186254301 186254375 -56409978 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 234 0 0 0 chr1 186254721 186254747 -56409606 + (TTA)n Simple_repeat Simple_repeat 3 28 0 11702 79 10 1 chr1 186254747 186257112 -56407241 - L1PA7 LINE L1 -18 6136 3756 21 36 0 0 chr1 186257256 186257284 -56407069 + AT_rich Low_complexity Low_complexity 1 28 0 352 359 31 8 chr1 186258715 186258843 -56405510 - L2 LINE L2 0 3272 3142 499 171 122 0 chr1 186259411 186259534 -56404819 - Charlie4a DNA MER1_type -22 486 349 3222 233 67 23 chr1 186259544 186260868 -56403485 + L1MD1 LINE L1 15 1725 -4815 995 218 88 7 chr1 186260845 186261153 -56403200 + L1MD1 LINE L1 5415 5747 -793 * 3574 175 24 17 chr1 186261155 186261905 -56402448 + L1MD1 LINE L1 5882 6636 0 263 226 219 18 chr1 186261906 186262070 -56402283 - Charlie4a DNA MER1_type -168 340 144 1943 124 0 57 chr1 186262070 186262449 -56401904 - AluSx SINE Alu 0 361 1 329 265 68 0 chr1 186262449 186262581 -56401772 - Charlie4a DNA MER1_type -366 142 2 2398 82 0 0 chr1 186262622 186262928 -56401425 + AluY SINE Alu 1 306 -5 272 266 28 70 chr1 186263191 186263334 -56401019 - L2 LINE L2 -294 2978 2842 792 193 0 0 chr1 186263597 186263742 -56400611 + Tigger4(Zombi) DNA MER2_type 2 146 -2585 * 5068 116 11 38 chr1 186263736 186264621 -56399732 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 187 284 68 40 chr1 186264967 186265041 -56399312 - MER5A DNA MER1_type -72 117 42 471 273 72 72 chr1 186265531 186265740 -56398613 + L2 LINE L2 3098 3306 -7 425 295 121 0 chr1 186266010 186266176 -56398177 - MIR3 SINE MIR -18 190 5 857 191 42 4 chr1 186266729 186266965 -56397388 + MER33 DNA MER1_type 51 295 -29 216 0 0 0 chr1 186266965 186266989 -56397364 + (TA)n Simple_repeat Simple_repeat 2 25 0 2205 94 0 7 chr1 186266989 186267276 -56397077 - AluSx SINE Alu -17 295 11 209 225 23 47 chr1 186267288 186267384 -56396969 + (TTATA)n Simple_repeat Simple_repeat 3 97 -31 186 118 0 0 chr1 186267384 186267418 -56396935 + (TATAA)n Simple_repeat Simple_repeat 5 38 0 209 225 23 47 chr1 186267418 186267450 -56396903 + (TTATA)n Simple_repeat Simple_repeat 97 128 0 22 0 0 0 chr1 186270550 186270572 -56393781 + AT_rich Low_complexity Low_complexity 1 22 0 723 313 84 32 chr1 186271018 186271740 -56392613 - L2 LINE L2 0 3313 2552 333 202 213 0 chr1 186271892 186271986 -56392367 - L2 LINE L2 0 3313 3200 24 32 0 0 chr1 186273017 186273048 -56391305 + AT_rich Low_complexity Low_complexity 1 31 0 305 231 82 146 chr1 186276229 186276523 -56387830 - L1M2 LINE L1 -6063 786 512 28 0 0 0 chr1 186276602 186276630 -56387723 + GC_rich Low_complexity Low_complexity 1 28 0 357 259 49 52 chr1 186277937 186278134 -56386219 + MIR3 SINE MIR 1 191 -63 701 194 0 88 chr1 186278441 186278601 -56385752 + FRAM SINE Alu 1 146 -30 25 0 0 0 chr1 186278601 186278626 -56385727 + AT_rich Low_complexity Low_complexity 1 25 0 239 203 31 23 chr1 186278977 186279105 -56385248 + (TA)n Simple_repeat Simple_repeat 1 129 0 22 0 0 0 chr1 186279589 186279611 -56384742 + AT_rich Low_complexity Low_complexity 1 22 0 1510 183 0 25 chr1 186279647 186279932 -56384421 + AluJo SINE Alu 5 282 -30 206 95 24 0 chr1 186279935 186279977 -56384376 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 235 231 46 0 chr1 186280015 186280080 -56384273 - L1MC/D LINE L1 -1884 5924 5857 21 0 0 0 chr1 186281075 186281096 -56383257 + AT_rich Low_complexity Low_complexity 1 21 0 6112 138 63 19 chr1 186281915 186283221 -56381132 - L1MC1 LINE L1 -2 6331 4981 985 182 29 0 chr1 186285763 186285933 -56378420 - FAM SINE Alu 0 175 1 2131 125 3 0 chr1 186286149 186286471 -56377882 + AluSx SINE Alu 1 312 0 1572 185 7 40 chr1 186286724 186287022 -56377331 + AluJo SINE Alu 1 288 -24 1907 172 91 13 chr1 186287028 186287423 -56376930 - MSTA LTR MaLR -2 426 1 1749 175 7 7 chr1 186287484 186287792 -56376561 - AluJo SINE Alu -4 308 1 242 167 118 39 chr1 186287869 186287971 -56376382 - MLT1H LTR MaLR -102 447 338 23 68 0 0 chr1 186288952 186288996 -56375357 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr1 186289036 186289060 -56375293 + AT_rich Low_complexity Low_complexity 1 24 0 474 18 0 0 chr1 186289369 186289424 -56374929 + (A)n Simple_repeat Simple_repeat 1 55 0 266 116 93 0 chr1 186289486 186289529 -56374824 + MSTB LTR MaLR 5 51 -375 362 304 151 51 chr1 186289554 186289886 -56374467 + L2 LINE L2 2140 2504 -810 31 76 0 0 chr1 186289909 186289975 -56374378 + AT_rich Low_complexity Low_complexity 1 66 0 1141 146 45 25 chr1 186289975 186290174 -56374179 - AluJo SINE Alu -24 288 86 268 367 116 23 chr1 186290201 186290555 -56373798 + L2 LINE L2 2553 2939 -375 1189 76 13 0 chr1 186290878 186291033 -56373320 - LTR36 LTR ERV1 -8 603 447 2296 96 196 3 chr1 186291033 186291410 -56372943 + LTR7 LTR ERV1 1 450 0 * 2372 146 62 25 chr1 186291410 186291845 -56372508 - LTR36 LTR ERV1 -160 451 1 30 27 0 0 chr1 186292317 186292354 -56371999 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 186293523 186293546 -56370807 + AT_rich Low_complexity Low_complexity 1 23 0 4383 55 2 4 chr1 186293546 186294105 -56370248 - L1PA8 LINE L1 -8 6164 5607 239 339 17 0 chr1 186294118 186294236 -56370117 + L1 LINE L1 3584 3703 -2443 2007 149 0 7 chr1 186294236 186294544 -56369809 + AluSx SINE Alu 3 308 -4 210 300 14 14 chr1 186295412 186295482 -56368871 + MIR SINE MIR 92 161 -101 435 249 138 37 chr1 186295552 186295741 -56368612 - MIR SINE MIR -15 247 40 236 250 0 62 chr1 186295892 186295956 -56368397 + L2 LINE L2 3249 3308 -5 1129 196 5 0 chr1 186296058 186296286 -56368067 + AluJb SINE Alu 84 312 0 28 71 0 0 chr1 186297633 186297689 -56366664 + AT_rich Low_complexity Low_complexity 1 56 0 510 312 6 6 chr1 186297806 186297963 -56366390 - MIR SINE MIR -105 157 1 24 85 0 0 chr1 186300395 186300454 -56363899 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr1 186300652 186300676 -56363677 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr1 186300946 186300981 -56363372 + AT_rich Low_complexity Low_complexity 1 35 0 812 271 17 0 chr1 186301338 186301574 -56362779 + L1P5 LINE L1 31 270 -6593 * 7972 129 64 13 chr1 186301573 186303002 -56361351 + L1P5 LINE L1 1390 2890 -3973 * 12616 188 14 8 chr1 186302998 186304821 -56359532 + L1P5 LINE L1 3280 5134 -1733 594 0 0 0 chr1 186304821 186304887 -56359466 + (TAAAA)n Simple_repeat Simple_repeat 2 67 0 12616 188 14 8 chr1 186304887 186306268 -56358085 + L1P5 LINE L1 5134 6505 -362 360 133 0 0 chr1 186306271 186306331 -56358022 + (CA)n Simple_repeat Simple_repeat 2 61 0 227 73 49 0 chr1 186306350 186306391 -56357962 - LTR66 LTR ERVL -170 440 398 313 322 0 0 chr1 186306415 186306505 -56357848 - L1MC4 LINE L1 -1339 6703 6614 405 0 0 0 chr1 186306534 186306579 -56357774 + (TA)n Simple_repeat Simple_repeat 2 46 0 2327 123 3 6 chr1 186306582 186306940 -56357413 + L1PB1 LINE L1 5794 6150 -1 2125 113 0 0 chr1 186307201 186307485 -56356868 + AluSc SINE Alu 1 284 -25 2084 146 3 23 chr1 186308324 186308667 -56355686 - MER1B DNA MER1_type 0 337 2 382 342 7 77 chr1 186308953 186309069 -56355284 + L2 LINE L2 2564 2687 -627 2355 62 0 34 chr1 186309069 186309389 -56354964 - AluSc SINE Alu 0 309 1 382 342 7 77 chr1 186309389 186309570 -56354783 + L2 LINE L2 2687 2840 -474 846 197 0 43 chr1 186309630 186309818 -56354535 - L1PB1 LINE L1 0 6151 5972 23 0 0 0 chr1 186311432 186311455 -56352898 + AT_rich Low_complexity Low_complexity 1 23 0 4184 66 4 5 chr1 186311455 186312014 -56352339 - L1PA8 LINE L1 -8 6164 5607 1915 159 0 7 chr1 186312145 186312453 -56351900 + AluSx SINE Alu 3 308 -4 873 161 7 13 chr1 186362600 186362749 -56301604 - AluJb SINE Alu -75 237 90 400 310 89 25 chr1 186362841 186363044 -56301309 + L2 LINE L2 2931 3146 -167 1150 78 12 0 chr1 186363524 186363691 -56300662 + (TTCC)n Simple_repeat Simple_repeat 3 171 0 821 190 6 26 chr1 186363691 186364035 -56300318 + CT-rich Low_complexity Low_complexity 1 337 0 623 239 9 0 chr1 186364047 186364160 -56300193 - FLAM_A SINE Alu -19 114 1 214 349 19 0 chr1 186364972 186365071 -56299282 - MIR SINE MIR -71 137 34 33 43 0 0 chr1 186365306 186365353 -56299000 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr1 186365770 186365792 -56298561 + AT_rich Low_complexity Low_complexity 1 22 0 268 322 27 27 chr1 186366971 186367120 -56297233 - L2 LINE L2 -1432 1882 1734 195 42 0 0 chr1 186367440 186367464 -56296889 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 370 350 186 8 chr1 186368108 186368597 -56295756 + L3 LINE CR1 736 1311 -266 331 281 42 0 chr1 186368616 186368712 -56295641 - L2 LINE L2 0 3272 3173 276 325 55 91 chr1 186368780 186369054 -56295299 + L3 LINE CR1 1301 1564 -13 268 138 121 17 chr1 186369370 186369428 -56294925 + LTR23-int LTR ERV1 2754 2817 -2306 27 49 0 0 chr1 186369599 186369640 -56294713 + AT_rich Low_complexity Low_complexity 1 41 0 615 290 75 5 chr1 186370763 186370963 -56293390 + MIR SINE MIR 25 238 -24 276 324 176 7 chr1 186371240 186371376 -56292977 + MIR3 SINE MIR 50 208 0 401 313 41 69 chr1 186371599 186371845 -56292508 - MIR SINE MIR -5 257 19 348 260 87 19 chr1 186372236 186372340 -56292013 + L2 LINE L2 3160 3270 -2 194 308 217 50 chr1 186372358 186372478 -56291875 - L2 LINE L2 0 3272 3133 269 169 5 0 chr1 186372762 186372821 -56291532 - MLT2C1 LTR ERVL 0 397 357 1716 167 23 29 chr1 186372862 186373210 -56291143 - MLT2C1 LTR ERVL -49 348 3 325 120 0 83 chr1 186374271 186374404 -56289949 + (TCC)n Simple_repeat Simple_repeat 1 122 0 1755 183 77 34 chr1 186375855 186376233 -56288120 + MSTD LTR MaLR 1 394 -2 341 389 7 7 chr1 186376308 186376457 -56287896 + MIR3 SINE MIR 54 202 -6 2015 126 11 0 chr1 186377909 186378194 -56286159 - AluSg SINE Alu -22 288 1 537 16 0 0 chr1 186378792 186378854 -56285499 + (CA)n Simple_repeat Simple_repeat 2 63 0 253 313 20 30 chr1 186380154 186380253 -56284100 + MIR SINE MIR 91 188 -74 527 342 29 22 chr1 186380579 186380857 -56283496 - LTR16A LTR ERVL -153 297 18 281 277 27 36 chr1 186382643 186382755 -56281598 - MLT1J1 LTR MaLR -236 210 100 275 213 67 0 chr1 186382907 186382982 -56281371 - MLT1J1 LTR MaLR -366 80 1 225 0 0 0 chr1 186384589 186384614 -56279739 + (T)n Simple_repeat Simple_repeat 1 25 0 184 366 58 35 chr1 186385112 186385284 -56279069 + L2 LINE L2 2553 2728 -586 463 337 71 0 chr1 186385329 186385513 -56278840 + MIR SINE MIR 47 243 -19 231 426 49 5 chr1 186385630 186385834 -56278519 + L2 LINE L2 2825 3037 -235 244 225 11 22 chr1 186386643 186386732 -56277621 + CT-rich Low_complexity Low_complexity 4 91 0 2056 128 21 0 chr1 186387532 186387821 -56276532 + AluSx SINE Alu 1 295 -17 691 177 77 0 chr1 186388079 186388209 -56276144 + AluJb SINE Alu 168 307 -5 228 307 48 102 chr1 186389250 186389416 -56274937 + MER5A DNA MER1_type 33 189 0 23 0 0 0 chr1 186389738 186389761 -56274592 + AT_rich Low_complexity Low_complexity 1 23 0 197 346 140 0 chr1 186391677 186391784 -56272569 - MIR3 SINE MIR -19 189 68 22 56 0 0 chr1 186394671 186394707 -56269646 + AT_rich Low_complexity Low_complexity 1 36 0 1530 169 23 10 chr1 186396452 186396754 -56267599 - L1MC1 LINE L1 -6 6327 6022 248 348 139 0 chr1 186397106 186397221 -56267132 - L2 LINE L2 -8 3264 3134 2216 156 74 15 chr1 186398371 186398775 -56265578 + MSTA LTR MaLR 1 428 0 9415 163 22 2 chr1 186398775 186400394 -56263959 + MSTA-int LTR MaLR 1 1651 0 2111 127 117 38 chr1 186400395 186400790 -56263563 + MSTB LTR MaLR 1 426 0 246 149 27 14 chr1 186401083 186401157 -56263196 + (TA)n Simple_repeat Simple_repeat 2 76 0 217 250 120 33 chr1 186401472 186401564 -56262789 + MIR SINE MIR 41 140 -122 248 137 20 0 chr1 186403473 186403524 -56260829 + CT-rich Low_complexity Low_complexity 2 53 0 352 163 23 12 chr1 186403923 186404009 -56260344 + CT-rich Low_complexity Low_complexity 2 88 0 1381 264 64 39 chr1 186404533 186405084 -56259269 + L2 LINE L2 2749 3308 -5 260 325 13 0 chr1 186405115 186405192 -56259161 - L2 LINE L2 -1 3271 3194 327 246 17 123 chr1 186405462 186405641 -56258712 + MLT1L LTR MaLR 286 542 -66 1394 187 27 30 chr1 186406004 186406303 -56258050 - AluJo SINE Alu -9 303 6 390 322 42 0 chr1 186407056 186407174 -56257179 - MIR SINE MIR -73 189 67 36 23 0 0 chr1 186407778 186407821 -56256532 + AT_rich Low_complexity Low_complexity 1 43 0 914 301 75 24 chr1 186407957 186408369 -56255984 - LTR16A LTR ERVL 0 450 18 2186 106 6 13 chr1 186408473 186408785 -56255568 - AluSg SINE Alu 0 310 1 1760 231 55 17 chr1 186408996 186409523 -56254830 - L1MEc LINE L1 -2918 3297 2751 2851 174 20 0 chr1 186409523 186410029 -56254324 + Tigger1 DNA MER2_type 1 516 -1902 1376 94 219 0 chr1 186410027 186410260 -56254093 - Tigger1 DNA MER2_type -638 1780 1497 * 11742 123 45 1 chr1 186410285 186412100 -56252253 + Tigger1 DNA MER2_type 523 2418 0 1691 241 41 19 chr1 186412100 186412871 -56251482 - L1MEc LINE L1 -3463 2752 1995 3551 268 24 30 chr1 186412874 186413061 -56251292 - L1MEc LINE L1 -5056 1340 1153 875 66 16 0 chr1 186413061 186413183 -56251170 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 3551 268 24 30 chr1 186413183 186414195 -56250158 - L1MEc LINE L1 -5243 1153 148 2189 92 0 39 chr1 186415170 186415475 -56248878 - AluSg SINE Alu -15 295 3 303 331 151 0 chr1 186415558 186415730 -56248623 - MIR SINE MIR -42 220 23 199 275 183 8 chr1 186417161 186417281 -56247072 - MIR SINE MIR -49 213 73 603 266 101 20 chr1 186417285 186417484 -56246869 - MIR SINE MIR -11 251 37 258 32 0 0 chr1 186417700 186417731 -56246622 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2166 125 0 3 chr1 186417804 186418116 -56246237 - AluSx SINE Alu -1 311 1 704 195 0 8 chr1 186419193 186419316 -56245037 + FLAM_C SINE Alu 1 122 -21 21 57 0 0 chr1 186419320 186419355 -56244998 + AT_rich Low_complexity Low_complexity 1 35 0 246 176 0 0 chr1 186419692 186419743 -56244610 + T-rich Low_complexity Low_complexity 1 51 0 856 219 27 5 chr1 186420358 186420577 -56243776 - L1MD3 LINE L1 -1 7994 7771 275 302 110 63 chr1 186420584 186420705 -56243648 + L1ME LINE L1 5454 5568 -594 1093 174 76 54 chr1 186420705 186420774 -56243579 + MER33 DNA MER1_type 1 67 -2518 2185 96 0 24 chr1 186420774 186421094 -56243259 + AluSq SINE Alu 1 313 0 1093 174 76 54 chr1 186421094 186421338 -56243015 + MER33 DNA MER1_type 67 324 0 275 302 110 63 chr1 186421338 186421517 -56242836 + L1ME LINE L1 5568 5768 -394 908 236 195 56 chr1 186421750 186422211 -56242142 + MLT1H LTR MaLR 23 547 -2 26 101 0 0 chr1 186422267 186422356 -56241997 + AT_rich Low_complexity Low_complexity 1 89 0 2312 99 3 0 chr1 186424899 186425201 -56239152 - AluSx SINE Alu -9 303 1 23 54 0 0 chr1 186425531 186425568 -56238785 + AT_rich Low_complexity Low_complexity 1 37 0 365 167 103 0 chr1 186425631 186425709 -56238644 - MER67B LTR ERV1 0 661 576 763 118 0 25 chr1 186425709 186425828 -56238525 + FLAM_C SINE Alu 28 143 0 517 176 0 0 chr1 186425828 186425913 -56238440 - MER67B LTR ERV1 -73 588 504 1289 219 7 17 chr1 186425918 186426210 -56238143 - MER67B LTR ERV1 -362 299 11 244 172 0 62 chr1 186426257 186426321 -56238032 - LTR33A LTR ERVL -7 516 457 1533 186 22 29 chr1 186427190 186427502 -56236851 + AluJo SINE Alu 3 312 0 284 292 21 119 chr1 186427931 186428167 -56236186 - L2 LINE L2 -118 3154 2942 196 388 62 22 chr1 186428593 186428771 -56235582 + MIR3 SINE MIR 3 187 -21 285 323 51 43 chr1 186428868 186429053 -56235300 + MIR SINE MIR 21 206 -56 21 0 0 0 chr1 186431015 186431036 -56233317 + AT_rich Low_complexity Low_complexity 1 21 0 5275 76 9 4 chr1 186431103 186431990 -56232363 - L1P2 LINE L1 -603 5551 4659 4037 94 2 7 chr1 186431990 186432554 -56231799 + L1PA7 LINE L1 5593 6153 -1 776 226 42 42 chr1 186433563 186433780 -56230573 + MER20 DNA MER1_type 2 218 -1 22 70 0 0 chr1 186433883 186433926 -56230427 + AT_rich Low_complexity Low_complexity 1 43 0 1667 220 142 47 chr1 186435671 186436243 -56228110 + L2 LINE L2 2224 2849 -465 491 240 16 39 chr1 186436243 186436372 -56227981 + MER45A DNA AcHobo 1 126 -52 2364 85 3 0 chr1 186436373 186436703 -56227650 + L1PA6 LINE L1 3752 4082 -2064 7327 49 0 0 chr1 186436703 186438318 -56226035 + L1PA6 LINE L1 4539 6154 0 238 189 132 0 chr1 186438322 186438375 -56225978 + MER45A DNA AcHobo 115 174 -4 899 281 121 43 chr1 186438378 186438815 -56225538 + L2 LINE L2 2843 3313 0 2959 295 130 19 chr1 186439552 186441285 -56223068 + L2 LINE L2 1368 3311 -2 44 56 0 0 chr1 186441420 186441492 -56222861 + AT_rich Low_complexity Low_complexity 1 72 0 1981 270 117 35 chr1 186442912 186443253 -56221100 - L2 LINE L2 -8 3305 2993 2264 90 0 26 chr1 186443253 186443563 -56220790 + AluSq SINE Alu 1 302 -11 1981 270 117 35 chr1 186443563 186444475 -56219878 - L2 LINE L2 -320 2993 1897 395 318 103 23 chr1 186445495 186445709 -56218644 - MIR SINE MIR -12 250 20 232 240 54 132 chr1 186446166 186446317 -56218036 - MER5A DNA MER1_type -27 162 15 314 356 8 0 chr1 186447411 186447529 -56216824 - MER5A DNA MER1_type 0 189 71 281 289 31 10 chr1 186447442 186447539 -56216814 + MER5A DNA MER1_type 43 141 -48 * 208 410 48 0 chr1 186448022 186448127 -56216226 + L2 LINE L2 3163 3272 0 217 360 40 0 chr1 186448263 186448363 -56215990 - MIR SINE MIR -96 166 63 337 167 0 35 chr1 186448529 186448643 -56215710 + (TA)n Simple_repeat Simple_repeat 1 110 0 1495 121 5 0 chr1 186448645 186448869 -56215484 - Tigger4(Zombi) DNA MER2_type 0 2731 2507 1302 202 15 8 chr1 186448869 186449131 -56215222 - Tigger4(Zombi) DNA MER2_type -2467 264 1 869 118 44 0 chr1 186449958 186450093 -56214260 + FLAM_C SINE Alu 1 141 -2 294 117 58 29 chr1 186450450 186450553 -56213800 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 0 0 0 chr1 186450940 186450961 -56213392 + AT_rich Low_complexity Low_complexity 1 21 0 2199 104 0 0 chr1 186451294 186451634 -56212719 + AluSg SINE Alu 1 340 0 367 323 113 0 chr1 186452973 186453106 -56211247 + L2 LINE L2 3122 3269 -3 421 278 34 74 chr1 186453484 186453660 -56210693 + Charlie8 DNA MER1_type 95 263 -2154 201 194 167 28 chr1 186454094 186454166 -56210187 - MIR SINE MIR -56 206 125 1837 173 0 7 chr1 186454300 186454595 -56209758 + AluJb SINE Alu 1 293 -19 25 31 0 0 chr1 186454656 186454688 -56209665 + AT_rich Low_complexity Low_complexity 1 32 0 2273 103 3 0 chr1 186454774 186455065 -56209288 + AluSx SINE Alu 1 292 -20 219 250 0 0 chr1 186455157 186455217 -56209136 + (TA)n Simple_repeat Simple_repeat 2 61 0 223 143 18 18 chr1 186455965 186456021 -56208332 + T-rich Low_complexity Low_complexity 2 57 0 762 43 0 0 chr1 186456247 186456341 -56208012 + (TTCC)n Simple_repeat Simple_repeat 1 94 0 284 320 98 25 chr1 186457450 186457572 -56206781 - MIR3 SINE MIR -73 135 5 324 70 0 0 chr1 186457881 186457924 -56206429 + (CA)n Simple_repeat Simple_repeat 2 44 0 191 156 0 0 chr1 186457956 186457988 -56206365 - MER5C DNA MER1_type -292 32 1 272 299 127 8 chr1 186458288 186458422 -56205931 - MIR3 SINE MIR -9 199 50 2111 106 3 7 chr1 186458645 186458965 -56205388 + AluSg SINE Alu 1 319 0 394 279 41 81 chr1 186459281 186459478 -56204875 + MIR SINE MIR 74 262 0 977 271 72 28 chr1 186459678 186460268 -56204085 + L2 LINE L2 2541 3168 -145 2922 125 9 2 chr1 186460514 186460945 -56203408 + MER57B LTR ERV1 1 434 0 2358 63 13 10 chr1 186461063 186461366 -56202987 - AluY SINE Alu -6 305 2 228 259 0 0 chr1 186461661 186461715 -56202638 + L2 LINE L2 3256 3309 -4 303 293 10 10 chr1 186462194 186462293 -56202060 + CT-rich Low_complexity Low_complexity 1 99 0 21 36 0 0 chr1 186462303 186462331 -56202022 + AT_rich Low_complexity Low_complexity 1 28 0 29 70 0 0 chr1 186463052 186463109 -56201244 + AT_rich Low_complexity Low_complexity 1 57 0 42902 32 21 1 chr1 186463143 186469171 -56195182 - L1PA2 LINE L1 -2 6153 4 1443 204 28 53 chr1 186469179 186469575 -56194778 - L1ME2 LINE L1 0 6164 5779 2181 199 53 5 chr1 186469578 186470011 -56194342 - MLT2C2 LTR ERVL -10 454 1 535 128 0 12 chr1 186470049 186470135 -56194218 + MLT1B LTR MaLR 1 85 -305 4742 91 159 107 chr1 186470135 186471610 -56192743 + pTR5 LTR ERV1 748 2438 0 1407 183 93 7 chr1 186471612 186471901 -56192452 + MLT1B LTR MaLR 77 390 0 1131 222 108 13 chr1 186471901 186472254 -56192099 - L1ME2 LINE L1 -423 5741 5346 1329 273 109 29 chr1 186472388 186472584 -56191769 - L1ME2 LINE L1 -857 5289 5110 1563 241 63 16 chr1 186472584 186473028 -56191325 - MLT1C LTR MaLR 0 467 3 1329 273 109 29 chr1 186473028 186473692 -56190661 - L1ME2 LINE L1 -1036 5110 4360 319 269 13 0 chr1 186473705 186473783 -56190570 + L1 LINE L1 4381 4459 -1687 2140 249 94 12 chr1 186473816 186474796 -56189557 - L1ME2 LINE L1 -2842 3304 2245 518 157 12 0 chr1 186474804 186474887 -56189466 + AluJ/FLAM SINE Alu 3 86 -226 1523 173 0 0 chr1 186474887 186475130 -56189223 - AluSx SINE Alu -69 243 1 1987 162 15 0 chr1 186475130 186475658 -56188695 - L1P5 LINE L1 -572 5584 5051 876 193 156 115 chr1 186475773 186476570 -56187783 - L1MC5 LINE L1 -48 7913 7085 308 292 21 10 chr1 186476574 186476670 -56187683 - LTR16A LTR ERVL -4 446 350 982 284 86 60 chr1 186476671 186477255 -56187098 - HERV16 LTR ERVL -4397 599 1 580 286 168 0 chr1 186477264 186477460 -56186893 - LTR16A LTR ERVL -5 445 217 838 248 105 107 chr1 186477496 186477966 -56186387 - L1MC4 LINE L1 -880 7081 6632 28 0 0 0 chr1 186478051 186478079 -56186274 + AT_rich Low_complexity Low_complexity 1 28 0 211 296 0 0 chr1 186478528 186478582 -56185771 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 366 23 0 0 chr1 186478582 186478625 -56185728 + (CA)n Simple_repeat Simple_repeat 2 44 0 363 282 88 71 chr1 186479000 186479170 -56185183 - MIR SINE MIR -56 206 34 1712 188 86 6 chr1 186480618 186480979 -56183374 - MLT1B LTR MaLR 0 390 1 861 241 92 116 chr1 186481508 186481788 -56182565 + L1MC4 LINE L1 7395 7680 -362 2134 129 10 0 chr1 186481788 186482097 -56182256 + AluSx SINE Alu 1 312 0 861 241 92 116 chr1 186482097 186482375 -56181978 + L1MC4 LINE L1 7680 7937 -105 3552 44 0 0 chr1 186482375 186482809 -56181544 + L1PA5 LINE L1 5719 6152 -2 861 241 92 116 chr1 186482809 186482912 -56181441 + L1MC4 LINE L1 7937 8041 -1 7789 15 0 0 chr1 186484237 186485162 -56179191 - L1P LINE L1 -2930 3216 2292 2910 40 3 0 chr1 186485262 186485613 -56178740 + L1PA3 LINE L1 5803 6154 -1 1157 90 0 0 chr1 186485638 186485782 -56178571 + AluSg/x SINE Alu 144 287 -25 381 43 0 0 chr1 186485783 186485830 -56178523 + (CA)n Simple_repeat Simple_repeat 2 48 0 3938 157 95 21 chr1 186486039 186486808 -56177545 - LTR1B LTR ERV1 0 826 1 24 67 0 0 chr1 186486912 186486957 -56177396 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 186486986 186487008 -56177345 + AT_rich Low_complexity Low_complexity 1 22 0 303 287 62 34 chr1 186487116 186487325 -56177028 + L1M4 LINE L1 2335 2549 -3597 446 248 85 53 chr1 186487387 186487879 -56176474 + L1M4 LINE L1 2737 3244 -2902 550 277 107 30 chr1 186487921 186488416 -56175937 + L1M4 LINE L1 4077 4609 -1537 277 289 33 0 chr1 186488521 186488611 -56175742 + ORSL DNA AcHobo 181 273 -2 21 71 0 0 chr1 186488685 186488727 -56175626 + AT_rich Low_complexity Low_complexity 1 42 0 449 278 136 18 chr1 186489254 186489423 -56174930 - MIR SINE MIR 0 262 74 259 305 116 0 chr1 186489980 186490075 -56174278 - MIR SINE MIR -66 196 91 2878 158 86 26 chr1 186490901 186491472 -56172881 - LTR9 LTR ERV1 -7 605 1 234 0 0 0 chr1 186492016 186492042 -56172311 + (TTA)n Simple_repeat Simple_repeat 2 27 0 247 275 34 112 chr1 186492077 186492255 -56172098 - MER5B DNA MER1_type -5 173 10 227 286 38 38 chr1 186492926 186493031 -56171322 - L2 LINE L2 0 3272 3168 1657 294 84 91 chr1 186493283 186494265 -56170088 - L2 LINE L2 -337 2977 2007 237 33 0 0 chr1 186494265 186494295 -56170058 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1657 294 84 91 chr1 186494295 186494834 -56169519 - L2 LINE L2 -1307 2007 1466 465 246 65 22 chr1 186494935 186495073 -56169280 + MER103 DNA DNA 17 160 -6 21 36 0 0 chr1 186495374 186495402 -56168951 + AT_rich Low_complexity Low_complexity 1 28 0 2397 70 0 13 chr1 186495664 186495963 -56168390 - AluY SINE Alu -4 307 13 8329 186 50 29 chr1 186496070 186498251 -56166102 + L1MA3 LINE L1 9 3338 -4227 7004 162 23 31 chr1 186498249 186500754 -56163599 + L1MA3 LINE L1 5241 7723 -1 * 184 186 0 23 chr1 186500854 186500897 -56163456 + L2 LINE L2 3271 3312 -1 3894 66 4 7 chr1 186500919 186501616 -56162737 + L1P2 LINE L1 5076 5771 -383 386 89 0 0 chr1 186501716 186501772 -56162581 + L1PA6 LINE L1 6099 6154 0 219 331 234 8 chr1 186501999 186502123 -56162230 - L2 LINE L2 0 3272 3121 2630 41 0 10 chr1 186503095 186503409 -56160944 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 186504434 186504455 -56159898 + AT_rich Low_complexity Low_complexity 1 21 0 831 316 43 47 chr1 186504504 186505010 -56159343 - MLT1J LTR MaLR -7 504 1 26 0 0 0 chr1 186506051 186506077 -56158276 + AT_rich Low_complexity Low_complexity 1 26 0 5672 192 81 23 chr1 186506124 186507227 -56157126 - Charlie1a DNA MER1_type -1306 1455 256 2259 98 7 7 chr1 186507227 186507534 -56156819 - AluSq SINE Alu -6 307 1 5672 192 81 23 chr1 186507534 186507805 -56156548 - Charlie1a DNA MER1_type -2505 256 2 24 0 0 0 chr1 186508119 186508143 -56156210 + AT_rich Low_complexity Low_complexity 1 24 0 1657 217 3 19 chr1 186508820 186509198 -56155155 + MLT1A2 LTR MaLR 3 374 0 302 340 62 3 chr1 186509502 186509652 -56154701 + MIR SINE MIR 43 197 -58 475 354 39 69 chr1 186509998 186510362 -56153991 + L2 LINE L2 2919 3271 -1 797 249 78 66 chr1 186513450 186513707 -56150646 - MIR SINE MIR 0 262 3 248 290 97 7 chr1 186515601 186515746 -56148607 + MIR SINE MIR 19 181 -67 541 157 286 29 chr1 186516324 186516464 -56147889 + MER5B DNA MER1_type 3 178 0 564 309 37 0 chr1 186516694 186516885 -56147468 + MIR SINE MIR 53 250 -12 326 374 36 6 chr1 186518067 186518233 -56146120 + MER20 DNA MER1_type 30 200 -19 6075 87 9 20 chr1 186519554 186520438 -56143915 - L1PA8A LINE L1 -1 6130 5257 256 243 41 30 chr1 186520828 186520997 -56143356 + (TA)n Simple_repeat Simple_repeat 1 171 0 194 271 0 0 chr1 186521338 186521386 -56142967 + L2 LINE L2 3263 3310 -3 270 268 152 7 chr1 186523174 186523312 -56141041 + MIR SINE MIR 49 206 -56 510 275 98 11 chr1 186523330 186523666 -56140687 - MLT1G LTR MaLR -3 587 153 2146 117 0 0 chr1 186523916 186524199 -56140154 - AluSg SINE Alu -27 283 1 245 203 31 31 chr1 186524266 186524330 -56140023 + L2 LINE L2 3209 3272 0 1495 279 94 60 chr1 186524631 186525839 -56138514 + L2 LINE L2 2071 3313 0 25 0 0 0 chr1 186526122 186526147 -56138206 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr1 186526183 186526219 -56138134 + AT_rich Low_complexity Low_complexity 1 36 0 1175 180 40 5 chr1 186526570 186526792 -56137561 - MLT2B3 LTR ERVL -324 230 1 1710 199 13 5 chr1 186527438 186527904 -56136449 + MLT2B1 LTR ERVL 1 520 0 30 45 0 0 chr1 186528409 186528453 -56135900 + AT_rich Low_complexity Low_complexity 1 44 0 630 244 29 0 chr1 186528491 186528663 -56135690 - L1MB7 LINE L1 -9 6175 5999 284 293 40 0 chr1 186529056 186529131 -56135222 + MIR SINE MIR 74 151 -111 30 45 0 0 chr1 186530241 186530285 -56134068 + AT_rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chr1 186530429 186530450 -56133903 + (T)n Simple_repeat Simple_repeat 1 21 0 1032 324 58 5 chr1 186530543 186530920 -56133433 - LTR16A LTR ERVL 0 450 54 249 319 0 14 chr1 186530946 186531018 -56133335 + L2 LINE L2 2982 3052 -261 648 245 52 100 chr1 186531044 186531161 -56133192 + MLT1E LTR MaLR 51 172 -482 2173 129 0 0 chr1 186531161 186531471 -56132882 + AluSx SINE Alu 1 310 -2 648 245 52 100 chr1 186531471 186531727 -56132626 + MLT1E LTR MaLR 172 478 -176 4324 172 32 5 chr1 186531730 186532094 -56132259 + L1MA9 LINE L1 5418 5771 -541 216 97 0 0 chr1 186532094 186532125 -56132228 + (CATA)n Simple_repeat Simple_repeat 4 34 0 4324 172 32 5 chr1 186532125 186532599 -56131754 + L1MA9 LINE L1 5771 6279 -33 11963 183 29 73 chr1 186532603 186534591 -56129762 - L1MA4A LINE L1 -9 6996 4923 883 257 89 166 chr1 186534591 186535054 -56129299 - MSTA LTR MaLR 0 428 2 8962 149 11 37 chr1 186535055 186536674 -56127679 - THE1C-int LTR MaLR 0 1580 4 1747 158 48 45 chr1 186536677 186537051 -56127302 - THE1C LTR MaLR 0 375 1 11963 183 29 73 chr1 186537051 186540339 -56124014 - L1MA4A LINE L1 -2084 4921 2129 2122 144 0 0 chr1 186540339 186540651 -56123702 - AluSx SINE Alu 0 312 1 11963 183 29 73 chr1 186540651 186542691 -56121662 - L1MA4A LINE L1 -4876 2129 1 592 237 22 22 chr1 186542748 186542883 -56121470 + MLT1E LTR MaLR 490 624 -30 285 332 31 31 chr1 186542933 186543126 -56121227 + L2 LINE L2 3101 3293 -20 260 263 84 66 chr1 186543393 186543606 -56120747 - L1ME LINE L1 -303 5818 5602 286 243 155 10 chr1 186544092 186544195 -56120158 - MIR SINE MIR -43 219 102 294 149 0 0 chr1 186544195 186544242 -56120111 - Charlie3 DNA MER1_type -8 2702 2656 21 0 0 0 chr1 186545466 186545487 -56118866 + AT_rich Low_complexity Low_complexity 1 21 0 2293 101 0 3 chr1 186546211 186546519 -56117834 - AluSg SINE Alu -3 307 1 1204 208 5 0 chr1 186547331 186547552 -56116801 - MER58A DNA MER1_type -2 222 1 214 210 65 0 chr1 186547774 186547836 -56116517 - MER5C DNA MER1_type -258 66 1 433 328 124 0 chr1 186549967 186550168 -56114185 + MIR SINE MIR 37 262 0 22 56 0 0 chr1 186550289 186550325 -56114028 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr1 186550417 186550439 -56113914 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 1779 28 0 0 chr1 186550442 186550656 -56113697 - L1PA4 LINE L1 -3 6152 5939 207 139 0 0 chr1 186550837 186550873 -56113480 + (TTC)n Simple_repeat Simple_repeat 2 37 0 26 30 0 0 chr1 186551053 186551086 -56113267 + AT_rich Low_complexity Low_complexity 1 33 0 33 66 0 0 chr1 186551645 186551706 -56112647 + AT_rich Low_complexity Low_complexity 1 61 0 3159 57 5 0 chr1 186551716 186552121 -56112232 - L1PA7 LINE L1 -4 6150 5744 24 0 0 0 chr1 186552293 186552317 -56112036 + AT_rich Low_complexity Low_complexity 1 24 0 7369 37 10 0 chr1 186552317 186553764 -56110589 - L1PA5 LINE L1 -8 6146 4693 7782 31 0 1 chr1 186553764 186554700 -56109653 + L1PA5 LINE L1 3766 4700 -1446 356 278 142 18 chr1 186557116 186557285 -56107068 + MIR SINE MIR 65 254 -8 21 0 0 0 chr1 186558472 186558493 -56105860 + AT_rich Low_complexity Low_complexity 1 21 0 194 361 10 0 chr1 186558533 186558630 -56105723 + MIR3 SINE MIR 100 197 -11 324 0 0 0 chr1 186561466 186561502 -56102851 + (TG)n Simple_repeat Simple_repeat 2 37 0 28 71 0 0 chr1 186562674 186562730 -56101623 + AT_rich Low_complexity Low_complexity 1 56 0 262 78 20 20 chr1 186563037 186563088 -56101265 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr1 186563927 186563955 -56100398 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr1 186565205 186565248 -56099105 + AT_rich Low_complexity Low_complexity 1 43 0 584 227 28 0 chr1 186565548 186565689 -56098664 - LTR52 LTR ERVL -22 399 255 294 322 59 30 chr1 186565932 186566134 -56098219 + L2 LINE L2 3103 3310 -3 282 358 109 7 chr1 186566117 186566254 -56098099 + L2 LINE L2 3118 3268 -4 * 228 200 0 0 chr1 186566718 186566773 -56097580 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3155 149 151 7 chr1 186567748 186568366 -56095987 + MER39 LTR ERV1 1 707 0 601 186 64 0 chr1 186568729 186568869 -56095484 + L1MB1 LINE L1 6019 6167 -1 291 54 0 0 chr1 186569570 186569607 -56094746 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr1 186570002 186570024 -56094329 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 186570811 186570840 -56093513 + AT_rich Low_complexity Low_complexity 1 29 0 302 337 41 31 chr1 186571267 186571365 -56092988 + MIR3 SINE MIR 58 156 -52 193 325 96 41 chr1 186571490 186571687 -56092666 + L2 LINE L2 2748 2955 -359 386 95 0 81 chr1 186571722 186571796 -56092557 - L1PA8 LINE L1 0 6172 6105 2812 66 3 0 chr1 186571796 186572159 -56092194 + L1PA8A LINE L1 5499 5862 -269 571 282 89 58 chr1 186572163 186572454 -56091899 + L2 LINE L2 3014 3313 0 189 171 0 0 chr1 186572621 186572656 -56091697 + CT-rich Low_complexity Low_complexity 3 37 0 4480 178 29 84 chr1 186573717 186574713 -56089640 - L1PA16 LINE L1 -6 6160 5205 516 139 0 0 chr1 186574713 186574792 -56089561 + AluSc SINE Alu 113 191 -118 4480 178 29 84 chr1 186574792 186575335 -56089018 - L1PA16 LINE L1 -961 5205 4634 1845 138 35 73 chr1 186575371 186575663 -56088690 - MER67C LTR ERV1 -108 406 167 1907 109 3 44 chr1 186575663 186576011 -56088342 + AluSc SINE Alu 1 336 0 1845 138 35 73 chr1 186576011 186576172 -56088181 - MER67C LTR ERV1 -347 167 1 21 0 0 0 chr1 186577180 186577201 -56087152 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 186578035 186578058 -56086295 + AT_rich Low_complexity Low_complexity 1 23 0 695 162 37 0 chr1 186578189 186578325 -56086028 - L1MB2 LINE L1 -27 5968 5828 414 152 0 0 chr1 186578327 186578393 -56085960 + MLT2B3 LTR ERVL 3 68 -486 1985 189 77 55 chr1 186578492 186578962 -56085391 + MLT2B3 LTR ERVL 75 554 0 525 164 0 55 chr1 186578962 186579072 -56085281 - L1MB2 LINE L1 -160 5832 5729 361 118 0 26 chr1 186579135 186579211 -56085142 + (TA)n Simple_repeat Simple_repeat 1 74 0 5694 131 56 49 chr1 186579212 186580283 -56084070 + Tigger3b DNA MER2_type 52 1130 -101 1990 146 82 18 chr1 186580283 186580625 -56083728 - THE1B LTR MaLR 0 364 1 471 250 10 0 chr1 186580636 186580736 -56083617 + Tigger3b DNA MER2_type 1131 1231 0 7612 211 57 26 chr1 186580773 186581128 -56083225 - L1MB2 LINE L1 -336 5656 5313 186 43 0 0 chr1 186581128 186581151 -56083202 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7612 211 57 26 chr1 186581151 186583338 -56081015 - L1MB2 LINE L1 -679 5313 3029 344 297 39 39 chr1 186583374 186583502 -56080851 - L1MB2 LINE L1 -5538 353 226 546 313 40 57 chr1 186583626 186583978 -56080375 - L1MB2 LINE L1 -5543 348 3 671 222 62 62 chr1 186584027 186584270 -56080083 - MER46C DNA MER2_type -1 337 95 600 205 33 0 chr1 186584442 186584564 -56079789 + LTR41 LTR ERVL 8 133 -640 929 264 135 50 chr1 186584602 186585003 -56079350 + LTR41 LTR ERVL 339 773 0 1804 202 95 14 chr1 186585363 186585793 -56078560 + MLT1C LTR MaLR 3 467 0 206 418 14 7 chr1 186588375 186588516 -56075837 + L2 LINE L2 3172 3313 0 1469 250 26 58 chr1 186590366 186590834 -56073519 + LTR40b LTR ERVL 2 454 -8 2181 272 11 31 chr1 186592340 186592980 -56071373 + L1M4 LINE L1 105 731 -5811 1538 237 58 32 chr1 186592973 186593245 -56071108 + L1M4 LINE L1 2645 2908 -3736 * 2215 96 0 0 chr1 186593245 186593536 -56070817 + AluY SINE Alu 1 291 -20 1538 237 58 32 chr1 186593536 186593799 -56070554 + L1M4 LINE L1 2908 3194 -3450 264 229 0 33 chr1 186595358 186595419 -56068934 - MIR SINE MIR -125 137 79 2329 83 7 0 chr1 186595651 186595952 -56068401 + AluSq SINE Alu 1 303 -10 1164 131 16 5 chr1 186596197 186596388 -56067965 - L1PA7 LINE L1 -4 6150 5958 1162 147 20 5 chr1 186596605 186596803 -56067550 + AluSg/x SINE Alu 112 312 0 623 255 36 8 chr1 186596817 186597064 -56067289 + LTR37B LTR ERV1 215 468 0 970 182 71 0 chr1 186597251 186597449 -56066904 - L1MC1 LINE L1 0 6333 6122 23 0 0 0 chr1 186599597 186599620 -56064733 + AT_rich Low_complexity Low_complexity 1 23 0 35 54 0 0 chr1 186599847 186599903 -56064450 + AT_rich Low_complexity Low_complexity 1 56 0 234 0 0 0 chr1 186600264 186600290 -56064063 + (TA)n Simple_repeat Simple_repeat 2 27 0 233 352 148 0 chr1 186602552 186602714 -56061639 + MIR3 SINE MIR 10 195 -13 2119 116 0 10 chr1 186605017 186605318 -56059035 - AluSq SINE Alu -15 298 1 443 303 0 9 chr1 186605347 186605456 -56058897 + L2 LINE L2 3160 3267 -5 378 267 53 40 chr1 186605568 186605718 -56058635 + MIR SINE MIR 40 191 -71 265 264 41 23 chr1 186605992 186606102 -56058251 + MIR SINE MIR 12 132 -76 183 273 195 0 chr1 186606164 186606241 -56058112 - L2 LINE L2 0 3313 3222 279 347 78 63 chr1 186606302 186606570 -56057783 - L2 LINE L2 -338 2976 2705 227 310 0 35 chr1 186607605 186607692 -56056661 + L2 LINE L2 2399 2482 -832 2020 130 7 3 chr1 186608322 186608622 -56055731 + AluSx SINE Alu 1 301 -11 21 57 0 0 chr1 186609138 186609173 -56055180 + AT_rich Low_complexity Low_complexity 1 35 0 625 317 134 44 chr1 186609431 186610251 -56054102 - L2 LINE L2 -470 2844 1951 209 267 17 9 chr1 186610326 186610442 -56053911 + (TA)n Simple_repeat Simple_repeat 2 118 0 333 186 0 0 chr1 186610490 186610560 -56053793 + (TA)n Simple_repeat Simple_repeat 2 71 0 323 263 21 0 chr1 186612575 186612670 -56051683 + MIR SINE MIR 110 206 -56 195 220 0 0 chr1 186612700 186612750 -56051603 + CT-rich Low_complexity Low_complexity 2 51 0 191 309 159 63 chr1 186612851 186613246 -56051107 + L2 LINE L2 2880 3312 -1 29 90 0 0 chr1 186614323 186614401 -56049952 + AT_rich Low_complexity Low_complexity 1 78 0 403 255 148 20 chr1 186614920 186615069 -56049284 - MIR SINE MIR -92 170 3 180 331 37 52 chr1 186615557 186615693 -56048660 + L2 LINE L2 2489 2622 -692 21 57 0 0 chr1 186616304 186616339 -56048014 + AT_rich Low_complexity Low_complexity 1 35 0 201 255 21 0 chr1 186617731 186617778 -56046575 + L2 LINE L2 3265 3312 -1 348 112 65 41 chr1 186618342 186618512 -56045841 + (TA)n Simple_repeat Simple_repeat 2 175 0 5618 47 1 0 chr1 186619258 186619966 -56044387 - L1P LINE L1 -2229 3917 3209 * 29358 28 0 1 chr1 186619963 186624294 -56040059 + L1PA2 LINE L1 1826 6155 0 26 74 0 0 chr1 186626526 186626580 -56037773 + AT_rich Low_complexity Low_complexity 1 54 0 211 164 36 36 chr1 186626813 186626868 -56037485 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 1940 142 0 23 chr1 186627049 186627352 -56037001 + AluSx SINE Alu 1 296 -16 202 320 0 0 chr1 186627352 186627402 -56036951 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 2028 128 0 26 chr1 186627416 186627722 -56036631 + AluSx SINE Alu 6 303 -9 21 57 0 0 chr1 186627846 186627881 -56036472 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr1 186627927 186627962 -56036391 + AT_rich Low_complexity Low_complexity 1 35 0 392 331 97 54 chr1 186629925 186630203 -56034150 - L2 LINE L2 -2684 630 341 336 278 139 21 chr1 186630833 186631027 -56033326 - MIR SINE MIR -9 253 37 29 60 0 0 chr1 186632685 186632735 -56031618 + AT_rich Low_complexity Low_complexity 1 50 0 1648 214 127 37 chr1 186634014 186634386 -56029967 + MLT1D LTR MaLR 1 425 -80 2117 124 51 25 chr1 186634386 186634741 -56029612 + THE1B LTR MaLR 1 364 0 1648 214 127 37 chr1 186634741 186634831 -56029522 + MLT1D LTR MaLR 425 505 0 213 228 158 40 chr1 186634943 186635044 -56029309 + MIR SINE MIR 88 200 -62 29 70 0 0 chr1 186635413 186635470 -56028883 + AT_rich Low_complexity Low_complexity 1 57 0 469 280 0 0 chr1 186636317 186636436 -56027917 - MIR SINE MIR -66 142 55 21 71 0 0 chr1 186637268 186637310 -56027043 + AT_rich Low_complexity Low_complexity 1 42 0 826 268 31 9 chr1 186637430 186637658 -56026695 - MARNA DNA Mariner -342 244 12 50 31 0 0 chr1 186638267 186638331 -56026022 + AT_rich Low_complexity Low_complexity 1 64 0 1989 142 3 0 chr1 186639208 186639518 -56024835 - AluSq SINE Alu -2 311 1 268 401 126 19 chr1 186639815 186640189 -56024164 + L2 LINE L2 2859 3272 0 372 296 136 29 chr1 186640301 186640507 -56023846 - MIR SINE MIR -15 247 20 403 234 32 65 chr1 186641714 186641868 -56022485 - L1MD2 LINE L1 -10 6349 6201 2299 243 73 29 chr1 186641870 186642387 -56021966 - L1MD2 LINE L1 -215 6144 5574 306 0 0 0 chr1 186642387 186642421 -56021932 + (TG)n Simple_repeat Simple_repeat 2 35 0 2299 243 73 29 chr1 186642421 186642741 -56021612 - L1MD2 LINE L1 -785 5574 5270 746 172 0 64 chr1 186642775 186642932 -56021421 - FRAM SINE Alu -32 144 1 1143 280 33 8 chr1 186642932 186643296 -56021057 - L1MD2 LINE L1 -851 5295 4923 476 267 193 20 chr1 186643285 186643637 -56020716 - HAL1 LINE L1 -889 1618 1206 * 23 0 0 0 chr1 186643898 186643921 -56020432 + AT_rich Low_complexity Low_complexity 1 23 0 2005 84 22 4 chr1 186644105 186644419 -56019934 - AluSc SINE Alu 0 319 1 25 31 0 0 chr1 186644425 186644457 -56019896 + AT_rich Low_complexity Low_complexity 1 32 0 195 386 136 28 chr1 186644779 186645243 -56019110 + L2 LINE L2 2332 2845 -469 24 32 0 0 chr1 186645681 186645712 -56018641 + AT_rich Low_complexity Low_complexity 1 31 0 382 327 67 14 chr1 186646858 186647081 -56017272 - L1MC/D LINE L1 -2035 5773 5539 2301 101 0 7 chr1 186647926 186648233 -56016120 + AluSq SINE Alu 9 313 0 4110 129 45 4 chr1 186649813 186650618 -56013735 + L1PA16 LINE L1 5219 6108 -58 301 346 146 22 chr1 186651946 186652391 -56011962 + L2 LINE L2 2223 2722 -592 865 250 45 4 chr1 186652617 186652861 -56011492 - L1MD3 LINE L1 0 7995 7742 22 0 0 0 chr1 186654872 186654894 -56009459 + AT_rich Low_complexity Low_complexity 1 22 0 417 153 0 0 chr1 186655118 186655190 -56009163 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 1241 113 47 5 chr1 186655394 186655606 -56008747 - L1PA13 LINE L1 -3 6160 5940 273 197 246 12 chr1 186655776 186655862 -56008491 - MIR SINE MIR -65 143 45 190 406 0 0 chr1 186655887 186655988 -56008365 - MIR SINE MIR -6 256 156 1355 192 0 73 chr1 186656425 186656738 -56007615 - AluJo SINE Alu -8 294 5 21 82 0 0 chr1 186657785 186657834 -56006519 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr1 186657897 186657921 -56006432 + AT_rich Low_complexity Low_complexity 1 24 0 1146 195 220 7 chr1 186660060 186660342 -56004011 + MER7A DNA MER2_type 7 346 0 276 86 0 0 chr1 186661004 186661039 -56003314 + U2 snRNA snRNA 1 35 -153 1099 292 39 60 chr1 186662688 186663003 -56001350 + L2 LINE L2 2461 2781 -532 2048 115 13 13 chr1 186663003 186663315 -56001038 + AluSx SINE Alu 1 312 0 1099 292 39 60 chr1 186663315 186663873 -56000480 + L2 LINE L2 2781 3313 0 465 82 0 14 chr1 186664069 186664142 -56000211 + L1MA3 LINE L1 6234 6305 0 22 0 0 0 chr1 186664631 186664653 -55999700 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 186664831 186664874 -55999479 + AT_rich Low_complexity Low_complexity 1 43 0 223 105 0 0 chr1 186665110 186665148 -55999205 - L2 LINE L2 0 3313 3276 1382 198 8 4 chr1 186665276 186665556 -55998797 + AluJb SINE Alu 25 305 0 1362 258 87 5 chr1 186665582 186666130 -55998223 + L1ME3A LINE L1 5202 5875 -287 1205 175 0 58 chr1 186666130 186666387 -55997966 + AluJb SINE Alu 1 242 -70 4463 61 16 40 chr1 186666387 186666519 -55997834 + MER11A LTR ERVK 1 135 -1131 1977 108 52 3 chr1 186666519 186666806 -55997547 - AluY SINE Alu -10 301 1 4463 61 16 40 chr1 186666806 186667746 -55996607 + MER11A LTR ERVK 135 1266 0 777 235 123 15 chr1 186667805 186668065 -55996288 + L1ME3A LINE L1 5879 6166 -4 182 114 0 29 chr1 186669605 186669640 -55994713 + (TA)n Simple_repeat Simple_repeat 1 34 0 2217 169 47 29 chr1 186669725 186670169 -55994184 - Tigger2 DNA MER2_type 0 2718 2267 407 203 0 0 chr1 186670153 186670222 -55994131 - Tigger2 DNA MER2_type -2649 69 1 * 1395 193 4 8 chr1 186670638 186670887 -55993466 - AluJo SINE Alu -26 286 39 3295 151 16 0 chr1 186670973 186671535 -55992818 + L1PA16 LINE L1 5581 6151 -15 198 379 68 0 chr1 186671625 186671728 -55992625 + MIR SINE MIR 34 143 -119 234 303 227 0 chr1 186672053 186672185 -55992168 + MIR SINE MIR 55 216 -46 407 304 158 21 chr1 186673629 186673869 -55990484 + MLT1J LTR MaLR 1 273 -238 702 82 0 0 chr1 186674100 186674198 -55990155 - L1PA4 LINE L1 0 6155 6058 1514 216 0 3 chr1 186675575 186675871 -55988482 + AluJo SINE Alu 1 295 -17 234 0 0 0 chr1 186675891 186675917 -55988436 + (CA)n Simple_repeat Simple_repeat 2 27 0 808 234 54 9 chr1 186678208 186678430 -55985923 + MER96B DNA MER1_type? 1 232 -185 1778 114 36 0 chr1 186678548 186678828 -55985525 + L1PA13 LINE L1 5874 6163 0 363 213 0 0 chr1 186678959 186679039 -55985314 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 21 89 0 0 chr1 186679057 186679113 -55985240 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr1 186679991 186680023 -55984330 + AT_rich Low_complexity Low_complexity 1 32 0 294 349 0 0 chr1 186680927 186681010 -55983343 - L1MEd LINE L1 -5453 666 584 374 286 255 8 chr1 186681027 186681268 -55983085 - L1MEd LINE L1 -5599 520 340 2102 110 3 41 chr1 186681268 186681587 -55982766 + AluSp SINE Alu 1 307 -6 374 286 255 8 chr1 186681587 186681698 -55982655 - L1MEd LINE L1 -5779 340 81 901 171 104 21 chr1 186681938 186682131 -55982222 + MER3 DNA MER1_type 1 209 0 2490 48 0 3 chr1 186682189 186682501 -55981852 + AluY SINE Alu 1 311 0 293 239 112 112 chr1 186682603 186682633 -55981720 + MER5A DNA MER1_type 1 30 -159 3341 123 31 2 chr1 186682633 186683184 -55981169 + L1MA2 LINE L1 5738 6304 0 293 239 112 112 chr1 186683184 186683341 -55981012 + MER5A DNA MER1_type 29 188 -1 * 739 232 104 0 chr1 186683187 186683351 -55981002 - MER5A DNA MER1_type -5 184 4 23 54 0 0 chr1 186683565 186683602 -55980751 + AT_rich Low_complexity Low_complexity 1 37 0 192 40 0 0 chr1 186683729 186683754 -55980599 + (A)n Simple_repeat Simple_repeat 1 25 0 234 205 0 0 chr1 186683831 186683870 -55980483 + MLT1L LTR MaLR 149 187 -428 23 68 0 0 chr1 186684875 186684919 -55979434 + AT_rich Low_complexity Low_complexity 1 44 0 409 342 180 0 chr1 186685110 186685455 -55978898 + L2 LINE L2 2097 2503 -811 1096 205 43 18 chr1 186685478 186685756 -55978597 - L1MB8 LINE L1 -6 6172 5888 2211 109 3 0 chr1 186685762 186686055 -55978298 - AluSx SINE Alu -14 298 5 5094 158 43 28 chr1 186686082 186687663 -55976690 - L1MA4 LINE L1 -14 6286 4685 3000 230 41 11 chr1 186687665 186688990 -55975363 - L1MB8 LINE L1 -296 5882 4516 786 106 6 123 chr1 186688998 186689168 -55975185 + L1 LINE L1 4640 4789 -1357 231 177 32 0 chr1 186689235 186689297 -55975056 + L1MC4 LINE L1 6640 6703 -1339 207 200 0 0 chr1 186689297 186689332 -55975021 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 1653 214 16 13 chr1 186689332 186689716 -55974637 - L1 LINE L1 -874 5272 4888 258 184 0 0 chr1 186689729 186689778 -55974575 - L1MA5 LINE L1 0 6300 6252 339 83 0 0 chr1 186689781 186689829 -55974524 - L1MA5 LINE L1 -87 6213 6166 * 2982 155 19 0 chr1 186689819 186690354 -55973999 - L1 LINE L1 -1249 4897 4353 333 188 14 0 chr1 186690369 186690438 -55973915 - MSTB1 LTR MaLR 0 432 363 690 182 6 79 chr1 186690541 186690706 -55973647 - MSTB2 LTR MaLR -31 426 274 743 184 107 0 chr1 186690712 186690880 -55973473 - LTR47A LTR ERVL -6 446 261 439 262 177 0 chr1 186691147 186691288 -55973065 - MSTB2 LTR MaLR -179 278 113 * 1199 227 46 80 chr1 186691286 186691700 -55972653 - MSTB2 LTR MaLR -35 422 23 335 316 131 43 chr1 186691756 186692333 -55972020 + L2 LINE L2 2685 3313 0 219 330 106 0 chr1 186692631 186692725 -55971628 + MIR SINE MIR 41 143 -67 273 250 57 23 chr1 186692872 186692960 -55971393 + Charlie7 DNA MER1_type 1 91 -2521 408 235 12 0 chr1 186692961 186693046 -55971307 + AluJ/FLAM SINE Alu 1 86 -226 1321 200 46 39 chr1 186693148 186693428 -55970925 + AluJo SINE Alu 19 300 -12 13733 138 40 11 chr1 186693440 186695789 -55968564 + Tigger1 DNA MER2_type 2 2418 0 377 284 0 0 chr1 186695872 186695981 -55968372 + Charlie7 DNA MER1_type 328 436 -2176 246 285 132 14 chr1 186696065 186696209 -55968144 + Charlie7 DNA MER1_type 1685 1845 -767 465 274 59 62 chr1 186696252 186696558 -55967795 + Charlie7 DNA MER1_type 1995 2299 -313 295 273 25 33 chr1 186696611 186696732 -55967621 + Charlie7 DNA MER1_type 2441 2560 -52 32 0 0 0 chr1 186696741 186696773 -55967580 + AT_rich Low_complexity Low_complexity 1 32 0 1935 128 3 44 chr1 186697526 186697847 -55966506 - AluSx SINE Alu 0 312 5 511 176 0 0 chr1 186698269 186698354 -55965999 + AluJ/FLAM SINE Alu 3 87 -225 28 0 0 0 chr1 186699340 186699368 -55964985 + AT_rich Low_complexity Low_complexity 1 28 0 1281 106 207 0 chr1 186699429 186699683 -55964670 + L1PA11 LINE L1 5864 6171 -1 314 323 25 25 chr1 186703590 186703751 -55960602 - MLT1J1 LTR MaLR -21 425 265 278 269 15 0 chr1 186703841 186703908 -55960445 - MLT1J1 LTR MaLR -374 72 5 185 280 20 0 chr1 186704167 186704217 -55960136 + L2 LINE L2 3218 3268 -4 22 0 0 0 chr1 186705034 186705056 -55959297 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr1 186705735 186705760 -55958593 + (CA)n Simple_repeat Simple_repeat 2 26 0 197 132 0 27 chr1 186705788 186705832 -55958521 + MIR SINE MIR 99 141 -67 199 273 0 0 chr1 186706139 186706183 -55958170 + L2 LINE L2 2442 2485 -829 1340 196 94 4 chr1 186707479 186707745 -55956608 + AluJb SINE Alu 3 292 -20 2194 127 0 7 chr1 186707917 186708224 -55956129 + AluSq SINE Alu 1 305 -8 236 345 42 17 chr1 186708318 186708437 -55955916 - L2 LINE L2 0 3272 3151 225 0 0 0 chr1 186709339 186709364 -55954989 + (A)n Simple_repeat Simple_repeat 1 25 0 447 52 0 0 chr1 186709673 186709731 -55954622 + (TA)n Simple_repeat Simple_repeat 2 59 0 23 33 0 0 chr1 186709841 186709871 -55954482 + AT_rich Low_complexity Low_complexity 1 30 0 577 300 72 0 chr1 186709944 186710124 -55954229 - MIR SINE MIR -62 200 8 26 0 0 0 chr1 186710135 186710161 -55954192 + AT_rich Low_complexity Low_complexity 1 26 0 279 0 0 0 chr1 186711211 186711242 -55953111 + (CA)n Simple_repeat Simple_repeat 2 32 0 26 0 0 0 chr1 186712820 186712846 -55951507 + AT_rich Low_complexity Low_complexity 1 26 0 225 272 211 17 chr1 186713570 186713750 -55950603 - L1MC/D LINE L1 -2459 5583 5369 368 354 119 6 chr1 186713842 186714170 -55950183 - L1MC/D LINE L1 -1007 5139 4775 508 301 123 40 chr1 186714179 186714554 -55949799 - MLT1I LTR MaLR -3 406 1 661 292 41 12 chr1 186714719 186714962 -55949391 - L1ME3A LINE L1 -296 5874 5625 1919 152 136 5 chr1 186715502 186715877 -55948476 + MSTA LTR MaLR 1 424 -4 288 303 131 0 chr1 186716201 186716300 -55948053 + L2 LINE L2 3160 3271 -1 247 360 29 29 chr1 186717987 186718126 -55946227 + L3b LINE CR1 1295 1433 -150 264 245 0 43 chr1 186718536 186718630 -55945723 - L1MC4 LINE L1 -1339 6703 6614 231 286 0 22 chr1 186718613 186718704 -55945649 + L1MC4 LINE L1 6615 6703 -1339 * 192 77 0 0 chr1 186718742 186718768 -55945585 + (TA)n Simple_repeat Simple_repeat 2 27 0 691 219 41 0 chr1 186718788 186718934 -55945419 - MSTB LTR MaLR -69 357 206 5030 260 92 12 chr1 186718937 186721071 -55943282 + L1M4b LINE L1 37 2514 -4624 22 0 0 0 chr1 186721210 186721232 -55943121 + AT_rich Low_complexity Low_complexity 1 22 0 2872 71 3 5 chr1 186721327 186721709 -55942644 + L1PA7 LINE L1 5771 6151 -3 1450 182 9 63 chr1 186721715 186722033 -55942320 + AluJb SINE Alu 1 301 -1 2919 245 54 29 chr1 186722146 186723397 -55940956 + L1M4b LINE L1 2610 3851 -3106 7692 177 21 30 chr1 186723399 186725555 -55938798 + L1P3 LINE L1 2 2157 -4304 3968 54 0 0 chr1 186726546 186727042 -55937311 - L1PA5 LINE L1 -7 6147 5652 6312 128 16 4 chr1 186727042 186728046 -55936307 + L1P3 LINE L1 2148 3163 -3298 8336 126 6 1 chr1 186729778 186731092 -55933261 + L1P3 LINE L1 3142 4462 -1999 1217 300 85 34 chr1 186731192 186731744 -55932609 - MLT1G1 LTR MaLR -2 585 10 262 253 24 106 chr1 186731959 186732129 -55932224 - MLT1G1-int LTR MaLR -183 1188 1033 64 57 0 0 chr1 186732433 186732539 -55931814 + AT_rich Low_complexity Low_complexity 1 106 0 1829 251 54 57 chr1 186732956 186733268 -55931085 - MLT1G1 LTR MaLR -4 591 280 2621 176 26 4 chr1 186733268 186733728 -55930625 + MER70A LTR ERVL 1 470 -2 1829 251 54 57 chr1 186733728 186734008 -55930345 - MLT1G1 LTR MaLR -315 280 1 234 314 20 10 chr1 186734017 186734119 -55930234 - MLT2E LTR ERVL -68 560 458 809 311 9 0 chr1 186734164 186734389 -55929964 - MLT2E LTR ERVL -308 320 94 21 0 0 0 chr1 186736698 186736719 -55927634 + AT_rich Low_complexity Low_complexity 1 21 0 998 312 49 18 chr1 186737001 186737386 -55926967 - LTR16A LTR ERVL 0 450 54 552 348 47 35 chr1 186737579 186738065 -55926288 - HERVL LTR ERVL -442 5322 4831 725 152 48 0 chr1 186738593 186738718 -55925635 - AluJo SINE Alu -177 135 5 380 311 8 8 chr1 186738735 186738857 -55925496 + L2 LINE L2 3191 3312 -1 762 316 78 14 chr1 186741075 186741432 -55922921 - MLT1I LTR MaLR -26 383 4 1650 169 13 27 chr1 186743763 186744064 -55920289 + AluJo SINE Alu 1 297 -15 2407 91 0 0 chr1 186744201 186744509 -55919844 + AluSc SINE Alu 1 308 -1 23 54 0 0 chr1 186744583 186744620 -55919733 + AT_rich Low_complexity Low_complexity 1 37 0 203 237 0 0 chr1 186744725 186744763 -55919590 + (CATG)n Simple_repeat Simple_repeat 2 39 0 216 208 38 0 chr1 186745972 186746025 -55918328 + MIR3 SINE MIR 124 178 -30 2520 58 0 3 chr1 186747792 186748103 -55916250 + AluY SINE Alu 1 310 -1 498 288 68 31 chr1 186748121 186748312 -55916041 - LTR16C LTR ERVL -97 394 197 282 341 0 29 chr1 186748895 186749033 -55915320 - HERVL LTR ERVL -646 5008 4875 1189 347 58 36 chr1 186749616 186750564 -55913789 - HERVL LTR ERVL -1482 4282 3314 1054 226 48 0 chr1 186750803 186751011 -55913342 + MER58A DNA MER1_type 1 218 -6 677 296 88 26 chr1 186751022 186751330 -55913023 - HERVL LTR ERVL -3193 2571 2245 203 158 0 0 chr1 186751832 186751870 -55912483 + T-rich Low_complexity Low_complexity 3 40 0 304 291 58 58 chr1 186752015 186752204 -55912149 - MIR SINE MIR -54 208 20 207 0 0 0 chr1 186752683 186752706 -55911647 + (TG)n Simple_repeat Simple_repeat 2 24 0 307 314 0 0 chr1 186752753 186752839 -55911514 - L1MC4 LINE L1 -1340 6702 6617 360 253 23 0 chr1 186752840 186752927 -55911426 - L1MC4 LINE L1 -1339 6703 6615 334 261 0 22 chr1 186752928 186753020 -55911333 - L1MC4 LINE L1 -1339 6703 6614 324 322 0 0 chr1 186752958 186753048 -55911305 + L1MC4 LINE L1 6614 6703 -1339 * 314 151 55 41 chr1 186753029 186753102 -55911251 - L1MCa LINE L1 -4358 2068 1995 * 396 209 0 0 chr1 186753213 186753304 -55911049 + (TA)n Simple_repeat Simple_repeat 1 91 0 335 303 0 0 chr1 186753305 186753394 -55910959 - L1MC4 LINE L1 -1339 6703 6615 343 237 0 43 chr1 186753407 186753500 -55910853 - L1MC4 LINE L1 -1339 6703 6615 196 231 0 44 chr1 186753503 186753594 -55910759 + (TA)n Simple_repeat Simple_repeat 1 87 0 270 264 23 0 chr1 186753601 186753688 -55910665 + L1MC4 LINE L1 6615 6703 -1339 14232 159 56 12 chr1 186753690 186756028 -55908325 - Tigger2 DNA MER2_type -38 2680 219 2080 123 0 26 chr1 186756028 186756330 -55908023 - AluSq SINE Alu -19 294 1 14232 159 56 12 chr1 186756330 186756559 -55907794 - Tigger2 DNA MER2_type -2499 219 1 316 184 40 0 chr1 186756997 186757073 -55907280 - L1MC2 LINE L1 -9 6615 6537 3927 260 79 13 chr1 186757079 186757444 -55906909 - L1M4 LINE L1 -2065 4081 3741 234 81 0 0 chr1 186757444 186757481 -55906872 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3927 260 79 13 chr1 186757481 186758494 -55905859 - L1M4 LINE L1 -2405 3741 2612 * 5078 187 27 28 chr1 186758489 186759527 -55904826 + L1MA9 LINE L1 4281 5329 -983 986 231 12 119 chr1 186759527 186759930 -55904423 + MLT1A1 LTR MaLR 3 362 -3 5078 187 27 28 chr1 186759930 186760907 -55903446 + L1MA9 LINE L1 5329 6305 -7 1659 168 22 3 chr1 186760919 186761240 -55903113 - L1MC2 LINE L1 -2176 5889 5563 2362 65 3 0 chr1 186761265 186761558 -55902795 - AluY SINE Alu -17 294 1 576 128 0 0 chr1 186761667 186761761 -55902592 - AluY SINE Alu -217 94 1 5624 263 58 13 chr1 186761761 186762678 -55901675 - L1MC2 LINE L1 -849 5577 4703 2379 58 0 3 chr1 186762678 186763012 -55901341 - AluY SINE Alu 0 311 1 5624 263 58 13 chr1 186763012 186764139 -55900214 - L1MC2 LINE L1 -1723 4703 3441 2156 140 101 0 chr1 186764138 186764523 -55899830 - L1P4 LINE L1 -453 5712 5289 * 347 235 10 20 chr1 186764549 186764647 -55899706 - L1MC2 LINE L1 -6199 227 131 * 4617 163 34 39 chr1 186764643 186766586 -55897767 - L1PB2 LINE L1 -3 6148 4220 3054 214 13 12 chr1 186766586 186766730 -55897623 + L1 LINE L1 3541 3683 -2463 185 0 0 39 chr1 186766730 186766756 -55897597 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 1862 107 8 4 chr1 186766759 186767057 -55897296 + AluSp SINE Alu 21 319 0 3054 214 13 12 chr1 186767057 186767580 -55896773 + L1 LINE L1 3684 4214 -1932 444 239 37 22 chr1 186767571 186767705 -55896648 - L1MC2 LINE L1 -6270 156 21 * 1745 97 93 0 chr1 186769294 186769626 -55894727 + AluY SINE Alu 1 356 0 763 238 0 12 chr1 186769723 186769887 -55894466 + MLT1A2 LTR MaLR 1 162 -212 1930 77 0 11 chr1 186770279 186770539 -55893814 + AluY SINE Alu 37 293 -18 1525 156 212 20 chr1 186772932 186773290 -55891063 + MSTA LTR MaLR 1 427 -1 2278 132 2 48 chr1 186773579 186773749 -55890604 + THE1C LTR MaLR 1 177 -198 1764 169 6 13 chr1 186773749 186774063 -55890290 - AluSx SINE Alu 0 312 1 2278 132 2 48 chr1 186774063 186774285 -55890068 + THE1C LTR MaLR 177 375 0 9197 121 52 42 chr1 186774285 186775849 -55888504 + THE1C-int LTR MaLR 1 1580 0 2295 153 5 0 chr1 186775849 186776222 -55888131 + THE1C LTR MaLR 1 375 0 214 357 65 55 chr1 186776406 186776605 -55887748 - MIR SINE MIR -61 201 1 339 65 0 0 chr1 186777488 186777534 -55886819 + (CAA)n Simple_repeat Simple_repeat 2 47 0 322 340 62 48 chr1 186777696 186777987 -55886366 + MLT1J LTR MaLR 112 406 -105 2815 176 28 22 chr1 186778064 186778644 -55885709 - L1MB8 LINE L1 -5 6173 5591 23 68 0 0 chr1 186779142 186779186 -55885167 + AT_rich Low_complexity Low_complexity 1 44 0 273 351 110 7 chr1 186780174 186780328 -55884025 + L3 LINE CR1 939 1108 -469 505 174 0 32 chr1 186780476 186780613 -55883740 - MLT1E1 LTR MaLR 0 654 485 415 250 24 65 chr1 186780626 186780794 -55883559 - MLT1E1 LTR MaLR -493 161 1 321 26 0 0 chr1 186780800 186780838 -55883515 + (CA)n Simple_repeat Simple_repeat 2 39 0 632 296 35 5 chr1 186780984 186781183 -55883170 - MIR SINE MIR 0 262 58 31 76 0 0 chr1 186782903 186782969 -55881384 + AT_rich Low_complexity Low_complexity 1 66 0 24 53 0 0 chr1 186785045 186785083 -55879270 + AT_rich Low_complexity Low_complexity 1 38 0 192 410 0 0 chr1 186787692 186787770 -55876583 + L2 LINE L2 3186 3263 -9 223 293 40 0 chr1 186788816 186788891 -55875462 + L2 LINE L2 3226 3303 -10 25 31 0 0 chr1 186789421 186789453 -55874900 + AT_rich Low_complexity Low_complexity 1 32 0 350 323 90 0 chr1 186789512 186789667 -55874686 - MIR SINE MIR -41 221 53 189 191 15 103 chr1 186790352 186790420 -55873933 + L2 LINE L2 3155 3216 -97 2228 171 23 7 chr1 186792519 186792922 -55871431 + MSTA LTR MaLR 2 343 -21 650 191 29 7 chr1 186792922 186793073 -55871280 - L1MB5 LINE L1 -337 5837 5684 216 337 74 17 chr1 186793172 186793347 -55871006 - MIR3 SINE MIR 0 208 24 269 349 23 8 chr1 186793667 186793799 -55870554 - L3 LINE CR1 -608 969 836 5256 157 29 4 chr1 186794200 186795143 -55869210 + L1MA6 LINE L1 5335 6300 0 31 44 0 0 chr1 186795161 186795206 -55869147 + AT_rich Low_complexity Low_complexity 1 45 0 430 345 56 44 chr1 186795713 186795965 -55868388 + MER115 DNA AcHobo 89 343 -350 653 263 57 14 chr1 186796030 186796239 -55868114 + MER115 DNA AcHobo 472 689 -4 787 298 19 0 chr1 186796255 186796463 -55867890 + MIR SINE MIR 41 252 -10 200 189 0 0 chr1 186796464 186796501 -55867852 + (ATGGTG)n Simple_repeat Simple_repeat 5 41 0 189 271 17 51 chr1 186796532 186796591 -55867762 - MIR SINE MIR -174 88 32 2708 202 30 24 chr1 186796663 186797291 -55867062 - L1MD1 LINE L1 -5 6237 5606 202 209 23 0 chr1 186797676 186797719 -55866634 + CT-rich Low_complexity Low_complexity 2 45 0 276 363 154 35 chr1 186797911 186798844 -55865509 + L2 LINE L2 1718 2761 -553 223 411 30 46 chr1 186799039 186799236 -55865117 + L2 LINE L2 3027 3220 -52 39 74 0 0 chr1 186799249 186799330 -55865023 + AT_rich Low_complexity Low_complexity 1 81 0 264 354 10 0 chr1 186799961 186800060 -55864293 - L2 LINE L2 0 3313 3214 277 343 21 14 chr1 186800244 186800387 -55863966 + L1MEc LINE L1 176 319 -6077 1946 276 21 2 chr1 186800448 186800915 -55863438 + MER70B LTR ERVL 1 476 -102 449 268 146 14 chr1 186801440 186801694 -55862659 + L1MEc LINE L1 825 1110 -5095 2253 246 89 70 chr1 186801701 186803382 -55860971 + L1MEc LINE L1 2146 3816 -2399 326 277 84 25 chr1 186803672 186803791 -55860562 - MIR SINE MIR -49 213 88 321 118 0 0 chr1 186803793 186803844 -55860509 + (TA)n Simple_repeat Simple_repeat 1 51 0 1323 233 196 32 chr1 186803870 186804138 -55860215 + MLT1E2 LTR MaLR 3 226 -400 2038 175 38 24 chr1 186804138 186804589 -55859764 - MSTB2 LTR MaLR 0 457 1 1323 233 196 32 chr1 186804589 186804856 -55859497 + MLT1E2 LTR MaLR 226 626 0 1408 249 109 5 chr1 186806109 186806495 -55857858 - MSTB LTR MaLR 0 426 1 460 342 42 16 chr1 186807759 186807952 -55856401 - MIR SINE MIR -18 244 47 24 53 0 0 chr1 186808465 186808503 -55855850 + AT_rich Low_complexity Low_complexity 1 38 0 2065 125 0 3 chr1 186809051 186809340 -55855013 + AluSg SINE Alu 4 291 -19 209 246 18 0 chr1 186810609 186810666 -55853687 + (TA)n Simple_repeat Simple_repeat 2 59 0 4270 155 30 46 chr1 186811093 186812092 -55852261 - MER11C LTR ERVK 0 1071 1 478 235 15 8 chr1 186812133 186812265 -55852088 - L1MC3 LINE L1 -77 7708 7576 21 0 0 0 chr1 186812785 186812806 -55851547 + AT_rich Low_complexity Low_complexity 1 21 0 2022 239 62 49 chr1 186862867 186863813 -55800540 + L1M4 LINE L1 3103 4061 -2085 754 232 51 8 chr1 186863812 186864049 -55800304 + L1MC3 LINE L1 7520 7766 -19 * 250 205 12 60 chr1 186864833 186864916 -55799437 - LTR66 LTR ERVL -171 439 361 273 296 19 28 chr1 186865175 186865283 -55799070 - LTR67 LTR ERVL 0 557 451 389 200 0 14 chr1 186865335 186865405 -55798948 + Tigger2 DNA MER2_type 1 69 -2649 * 2601 149 13 20 chr1 186865395 186865844 -55798509 + Tigger2 DNA MER2_type 2273 2718 0 304 370 43 0 chr1 186865949 186866133 -55798220 - LTR67 LTR ERVL -311 246 55 207 311 82 37 chr1 186867693 186867828 -55796525 + L2 LINE L2 3173 3313 0 186 325 71 16 chr1 186868006 186868132 -55796221 + MIR SINE MIR 120 252 -10 23 33 0 0 chr1 186868415 186868445 -55795908 + AT_rich Low_complexity Low_complexity 1 30 0 196 338 128 68 chr1 186868622 186869358 -55794995 + L2 LINE L2 1686 2465 -849 211 333 0 39 chr1 186869555 186869633 -55794720 + L2 LINE L2 3194 3268 -4 756 253 67 18 chr1 186870168 186870393 -55793960 + MIR SINE MIR 1 236 -26 10672 177 31 11 chr1 186870567 186872559 -55791794 + L1M1 LINE L1 926 2956 -4609 3768 50 15 0 chr1 186872553 186873079 -55791274 - L1PA5 LINE L1 -430 5724 5193 * 3433 43 0 0 chr1 186873079 186873497 -55790856 + L1PA5 LINE L1 5731 6149 -5 2087 149 22 20 chr1 186873502 186873904 -55790449 + L1M1 LINE L1 2935 3337 -4228 218 296 99 0 chr1 186874384 186874455 -55789898 - MIR SINE MIR -111 151 74 389 170 3 13 chr1 186877049 186877124 -55787229 - THE1C LTR MaLR -208 167 101 362 324 12 0 chr1 186879484 186879657 -55784696 - MER114 LTR ERV -22 626 452 362 241 0 13 chr1 186879738 186879816 -55784537 + Tigger5 DNA MER2_type 2 78 -2245 320 259 0 12 chr1 186879816 186879897 -55784456 - Tigger5 DNA MER2_type -3 2320 2241 550 306 39 0 chr1 186882295 186882475 -55781878 + MER5A DNA MER1_type 2 188 -1 1732 145 0 94 chr1 186882495 186882867 -55781486 + MER1B DNA MER1_type 1 337 0 2207 72 45 0 chr1 186883967 186884257 -55780096 + AluY SINE Alu 1 303 -8 29 28 0 0 chr1 186884379 186884415 -55779938 + AT_rich Low_complexity Low_complexity 1 36 0 211 323 129 0 chr1 186884539 186884663 -55779690 + MIR SINE MIR 45 184 -78 386 256 73 18 chr1 186884846 186885010 -55779343 - MER46C DNA MER2_type 0 338 166 3456 358 69 29 chr1 186885019 186887185 -55777168 - L2 LINE L2 -321 2992 740 2031 84 0 7 chr1 186887185 186887472 -55776881 - L1PA6 LINE L1 0 6154 5870 403 244 54 54 chr1 186887497 186887665 -55776688 - MER97c DNA MER1_type? -3 1087 920 621 232 57 38 chr1 186887702 186887913 -55776440 - MER97b DNA MER1_type? -635 418 204 1145 67 158 0 chr1 186888017 186888181 -55776172 - LTR12 LTR ERV1 -507 207 18 6931 139 8 11 chr1 186888191 186889743 -55774610 + L1MA1 LINE L1 4750 6298 -4 362 351 27 21 chr1 186889769 186889957 -55774396 - MIR SINE MIR -18 244 56 2223 146 93 5 chr1 186889961 186890379 -55773974 - L1PA16 LINE L1 -5 6161 5707 6709 231 65 16 chr1 186890479 186892061 -55772292 + L1MA5 LINE L1 596 2255 -4594 1780 196 35 6 chr1 186892040 186892617 -55771736 + L1MA5 LINE L1 2700 3295 -3553 * 5360 203 138 19 chr1 186892720 186894173 -55770180 + L1MA5 LINE L1 4283 5908 -940 1296 311 117 20 chr1 186894275 186894962 -55769391 + L2 LINE L2 2302 3086 -227 1379 208 35 27 chr1 186894962 186895333 -55769020 + MLT1A2 LTR MaLR 1 374 0 1296 311 117 20 chr1 186895333 186895585 -55768768 + L2 LINE L2 3086 3312 -1 568 313 49 21 chr1 186895602 186895845 -55768508 - MIR SINE MIR -3 259 10 27 0 0 0 chr1 186896983 186897010 -55767343 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr1 186897059 186897083 -55767270 + AT_rich Low_complexity Low_complexity 1 24 0 616 315 75 34 chr1 186897124 186897445 -55766908 - MLT1J2 LTR MaLR -8 442 109 345 145 0 0 chr1 186897764 186897826 -55766527 + (CA)n Simple_repeat Simple_repeat 1 62 0 180 125 0 0 chr1 186897825 186897857 -55766496 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 997 247 39 36 chr1 186898241 186898605 -55765748 - L1ME2 LINE L1 -30 6134 5770 2119 177 5 14 chr1 186899190 186899224 -55765129 - MLT1A1 LTR MaLR 0 365 332 1586 213 46 0 chr1 186899224 186899553 -55764800 + MER2 DNA MER2_type 1 344 0 2119 177 5 14 chr1 186899553 186899886 -55764467 - MLT1A1 LTR MaLR -33 332 1 5198 173 9 36 chr1 186901191 186902264 -55762089 + L1MA5 LINE L1 5956 6999 -3 2117 162 15 95 chr1 186902894 186903054 -55761299 - L1MC3 LINE L1 -12 7773 7602 2635 116 8 0 chr1 186903054 186903426 -55760927 - THE1C LTR MaLR 0 375 1 2117 162 15 95 chr1 186903426 186903803 -55760550 - L1MC3 LINE L1 -183 7602 7279 814 201 162 78 chr1 186903803 186904137 -55760216 - MLT1A1 LTR MaLR 0 365 4 216 0 0 0 chr1 186904161 186904185 -55760168 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 866 186 36 0 chr1 186904223 186904390 -55759963 - L1MC3 LINE L1 -558 7227 7055 296 68 0 45 chr1 186904394 186904438 -55759915 + MLT1A1 LTR MaLR 1 42 -354 6184 30 0 0 chr1 186904455 186905182 -55759171 - L1PA4 LINE L1 -4 6151 5425 7256 39 8 8 chr1 186905182 186906101 -55758252 + L1PA4 LINE L1 4485 5403 -743 615 294 0 16 chr1 186906248 186906432 -55757921 + MLT1A1 LTR MaLR 185 365 0 713 196 78 6 chr1 186906432 186906621 -55757732 - L1MC3 LINE L1 -743 7042 6868 799 247 75 56 chr1 186906683 186907139 -55757214 - L1MCa LINE L1 -4430 1996 1425 1150 291 21 21 chr1 186907139 186907558 -55756795 - LTR52 LTR ERVL -2 419 1 799 247 75 56 chr1 186907558 186907863 -55756490 - L1MCa LINE L1 -5001 1425 1127 22 0 0 0 chr1 186907889 186907911 -55756442 + AT_rich Low_complexity Low_complexity 1 22 0 227 364 93 7 chr1 186908120 186908260 -55756093 - L2 LINE L2 -967 2347 2196 2189 93 0 0 chr1 186908611 186908889 -55755464 + AluSg SINE Alu 1 278 -32 216 0 0 0 chr1 186908889 186908913 -55755440 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2997 94 2 0 chr1 186909005 186909408 -55754945 + MLT2A1 LTR ERVL 1 404 -40 360 214 0 82 chr1 186909412 186909510 -55754843 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr1 186909510 186909533 -55754820 + (TA)n Simple_repeat Simple_repeat 1 23 0 398 73 0 0 chr1 186909533 186909588 -55754765 + MLT2A1 LTR ERVL 390 444 0 2337 65 13 0 chr1 186909590 186909900 -55754453 + HERVL-A1 LTR ERVL 4 317 -5337 1835 243 103 7 chr1 186909904 186910954 -55753399 + SATR1 Satellite Satellite 1 1150 -37 11309 81 16 21 chr1 186910958 186912494 -55751859 + HERVL-A1 LTR ERVL 4126 5654 0 2814 105 5 0 chr1 186912494 186912876 -55751477 + MLT2A1 LTR ERVL 1 384 -60 420 20 0 0 chr1 186912876 186912925 -55751428 + (TA)n Simple_repeat Simple_repeat 2 50 0 919 41 172 0 chr1 186912933 186913078 -55751275 + HERVL LTR ERVL 5339 5508 -146 188 122 24 0 chr1 186913258 186913299 -55751054 + (TA)n Simple_repeat Simple_repeat 1 42 0 338 67 0 0 chr1 186913373 186913418 -55750935 - HERVL LTR ERVL -146 5508 5464 215 170 21 0 chr1 186913418 186913465 -55750888 + (TA)n Simple_repeat Simple_repeat 2 49 0 313 61 82 0 chr1 186913468 186913517 -55750836 + MLT2A1 LTR ERVL 392 444 0 245 419 8 0 chr1 186913587 186913711 -55750642 + MIR3 SINE MIR 49 173 -35 306 67 0 0 chr1 186914537 186914582 -55749771 + (TC)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr1 186914582 186914613 -55749740 + (CA)n Simple_repeat Simple_repeat 1 31 0 1702 226 77 5 chr1 186914693 186915096 -55749257 - MSTB1 LTR MaLR 0 432 1 21 0 0 0 chr1 186916049 186916070 -55748283 + AT_rich Low_complexity Low_complexity 1 21 0 3520 166 8 5 chr1 186916562 186917206 -55747147 - L1MA4 LINE L1 0 6300 5655 399 213 22 0 chr1 186917348 186917484 -55746869 + (TA)n Simple_repeat Simple_repeat 2 140 0 225 180 0 20 chr1 186917705 186917755 -55746598 - LTR66 LTR ERVL -172 438 390 24 0 0 0 chr1 186918046 186918070 -55746283 + AT_rich Low_complexity Low_complexity 1 24 0 312 259 13 4 chr1 186918246 186918493 -55745860 + (TA)n Simple_repeat Simple_repeat 1 249 0 1623 295 77 25 chr1 186918639 186919239 -55745114 - MER76 LTR ERV 0 688 58 1147 207 22 0 chr1 186919243 186919470 -55744883 + MLT2B1 LTR ERVL 5 236 -284 1009 312 45 47 chr1 186919571 186920042 -55744311 - L2 LINE L2 -1198 2116 1647 210 248 25 25 chr1 186920806 186920927 -55743426 + A-rich Low_complexity Low_complexity 3 123 0 22 0 0 0 chr1 186920941 186920963 -55743390 + AT_rich Low_complexity Low_complexity 1 22 0 30 83 0 0 chr1 186921237 186921309 -55743044 + AT_rich Low_complexity Low_complexity 1 72 0 231 331 0 84 chr1 186921385 186921461 -55742892 + MER5A DNA MER1_type 60 120 -69 2580 42 0 3 chr1 186921461 186921770 -55742583 - AluY SINE Alu -3 308 1 231 331 0 84 chr1 186921770 186921835 -55742518 + MER5A DNA MER1_type 120 189 0 262 107 0 107 chr1 186921994 186922050 -55742303 + MLT1E3 LTR MaLR 571 620 -4 270 81 0 0 chr1 186922396 186922433 -55741920 + (TA)n Simple_repeat Simple_repeat 1 37 0 2217 79 0 26 chr1 186922732 186923036 -55741317 + AluY SINE Alu 1 296 -15 3689 182 83 55 chr1 186923065 186923939 -55740414 - MER21A LTR ERV1 -28 903 5 266 203 34 0 chr1 186923939 186923998 -55740355 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1811 266 119 3 chr1 186924184 186924749 -55739604 - MLT1E1 LTR MaLR -24 630 1 1405 134 9 0 chr1 186925171 186925402 -55738951 + L1PB1 LINE L1 5918 6150 -1 35 83 0 0 chr1 186925405 186925489 -55738864 + AT_rich Low_complexity Low_complexity 1 84 0 224 280 90 50 chr1 186926303 186926403 -55737950 - MIR SINE MIR -5 257 154 23 33 0 0 chr1 186926626 186926656 -55737697 + AT_rich Low_complexity Low_complexity 1 30 0 438 284 149 19 chr1 186926815 186927023 -55737330 + L2 LINE L2 2916 3150 -163 467 212 0 16 chr1 186927071 186927164 -55737189 - MER2 DNA MER2_type -150 89 1 6082 161 65 9 chr1 186927423 186928584 -55735769 - Tigger3b DNA MER2_type -5 1226 1 778 348 79 32 chr1 186928587 186928997 -55735356 - L2 LINE L2 0 3313 2924 2628 70 3 14 chr1 186928997 186929355 -55734998 - L1PA6 LINE L1 -3 6151 5798 778 348 79 32 chr1 186929355 186929850 -55734503 - L2 LINE L2 -389 2924 2262 319 260 0 73 chr1 186929855 186929951 -55734402 + L2 LINE L2 3176 3264 -8 22 0 0 0 chr1 186931603 186931625 -55732728 + AT_rich Low_complexity Low_complexity 1 22 0 340 344 51 19 chr1 186932005 186932162 -55732191 - L3 LINE CR1 -502 1075 914 1586 161 114 0 chr1 186932266 186932590 -55731763 - MER46B DNA MER2_type 0 236 1 23 33 0 0 chr1 186933365 186933395 -55730958 + AT_rich Low_complexity Low_complexity 1 30 0 346 333 124 0 chr1 186933406 186933607 -55730746 - L3 LINE CR1 -977 600 375 1459 138 22 0 chr1 186933933 186934157 -55730196 - MER30 DNA MER1_type 0 230 2 262 181 14 14 chr1 186935313 186935385 -55728968 + CT-rich Low_complexity Low_complexity 2 73 0 15284 173 83 47 chr1 186935645 186938459 -55725894 + L1M1 LINE L1 495 3207 -4453 243 0 0 0 chr1 186938459 186938486 -55725867 + (CA)n Simple_repeat Simple_repeat 2 28 0 15284 173 83 47 chr1 186938486 186940818 -55723535 + L1M1 LINE L1 3207 6140 -1520 1326 145 8 39 chr1 186940818 186941052 -55723301 - THE1B LTR MaLR -137 227 1 15284 173 83 47 chr1 186941052 186941857 -55722496 + L1M1 LINE L1 6140 6915 -745 2334 186 28 3 chr1 186941856 186942345 -55722008 - L1P5 LINE L1 -414 5742 5241 * 2036 71 52 0 chr1 186943223 186943544 -55720809 + AluY SINE Alu 1 335 0 360 338 31 27 chr1 186943636 186943858 -55720495 + L1ME2 LINE L1 1389 1611 -4929 448 260 26 32 chr1 186943925 186944181 -55720172 + L1ME2 LINE L1 1847 2027 -4513 27 29 0 0 chr1 186944374 186944408 -55719945 + AT_rich Low_complexity Low_complexity 1 34 0 498 356 31 27 chr1 186944502 186944794 -55719559 + LTR16C LTR ERVL 199 491 0 2176 157 42 7 chr1 186944862 186945270 -55719083 - MER83B-int LTR ERV1 -2868 3078 2657 2186 161 17 47 chr1 186945370 186946100 -55718253 - MER83B-int LTR ERV1 -4128 2528 1777 189 0 0 0 chr1 186946100 186946121 -55718232 + (GA)n Simple_repeat Simple_repeat 2 22 0 2186 161 17 47 chr1 186946121 186946226 -55718127 - MER83B-int LTR ERV1 -4879 1777 632 421 198 0 85 chr1 186946224 186946330 -55718023 - MER83B-int LTR ERV1 -885 3995 3899 * 21 0 0 0 chr1 186946330 186946351 -55718002 + AT_rich Low_complexity Low_complexity 1 21 0 4570 189 90 45 chr1 186946422 186947526 -55716827 - MER83B-int LTR ERV1 -5521 1570 418 2102 206 76 49 chr1 186947572 186948187 -55716166 - LTR27 LTR ERV1 -2 634 3 1780 270 114 47 chr1 186948187 186949737 -55714616 + L1ME2 LINE L1 4137 5794 -746 1150 239 33 9 chr1 186949733 186950068 -55714285 + L1ME2 LINE L1 6215 6557 -1 * 2144 137 0 0 chr1 186950262 186950569 -55713784 + AluSx SINE Alu 6 312 0 242 143 20 0 chr1 186950597 186950646 -55713707 + (TA)n Simple_repeat Simple_repeat 2 51 0 716 194 110 136 chr1 186950846 186951228 -55713125 - MSTD LTR MaLR -20 376 5 24 85 0 0 chr1 186951419 186951478 -55712875 + AT_rich Low_complexity Low_complexity 1 59 0 231 189 0 0 chr1 186953808 186953861 -55710492 + (TA)n Simple_repeat Simple_repeat 2 54 0 1260 170 81 28 chr1 186953980 186954263 -55710090 - AluJb SINE Alu -14 298 1 22 0 0 0 chr1 186954344 186954366 -55709987 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr1 186954556 186954594 -55709759 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr1 186955478 186955518 -55708835 + AT_rich Low_complexity Low_complexity 1 40 0 182 305 12 24 chr1 186955774 186955856 -55708497 - MIR SINE MIR -10 252 172 1841 247 115 23 chr1 186955950 186956473 -55707880 - MLT1E LTR MaLR -1 592 22 2314 76 0 7 chr1 186957074 186957376 -55706977 - AluY SINE Alu -11 300 1 182 150 25 0 chr1 186957902 186957942 -55706411 + (CATA)n Simple_repeat Simple_repeat 2 42 0 191 114 29 0 chr1 186958830 186958865 -55705488 + (TA)n Simple_repeat Simple_repeat 1 36 0 289 286 132 19 chr1 186959092 186959510 -55704843 - L1MD2 LINE L1 -280 5882 5470 488 285 97 26 chr1 186959542 186959893 -55704460 - L1MD2 LINE L1 -748 5398 5023 228 67 0 0 chr1 186959897 186959927 -55704426 + (TA)n Simple_repeat Simple_repeat 2 31 0 246 175 18 0 chr1 186960682 186960739 -55703614 - HAL1b LINE L1 -31 1317 1260 1865 189 12 3 chr1 186960792 186961135 -55703218 + MER7A DNA MER2_type 2 345 -1 407 304 89 78 chr1 186961160 186961542 -55702811 - L1MC4a LINE L1 -1916 5892 5507 38 66 0 28 chr1 186961892 186961998 -55702355 + AT_rich Low_complexity Low_complexity 1 103 0 23 0 0 0 chr1 186962814 186962837 -55701516 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 186964110 186964138 -55700215 + AT_rich Low_complexity Low_complexity 1 28 0 230 306 35 0 chr1 186964830 186964915 -55699438 + LTR33A LTR ERVL 59 146 -377 947 294 54 40 chr1 186964944 186965625 -55698728 - L1MCa LINE L1 -4784 1642 952 1065 265 99 0 chr1 186965860 186966154 -55698199 - MER58B DNA MER1_type -18 323 1 1222 119 129 0 chr1 186966169 186966370 -55697983 + MER30 DNA MER1_type 4 230 0 2393 74 0 0 chr1 186966705 186967016 -55697337 - AluY SINE Alu 0 311 1 2436 200 147 89 chr1 186967666 186968704 -55695649 + L1MCa LINE L1 775 1873 -4553 827 231 32 40 chr1 186968706 186968957 -55695396 + L1ME1 LINE L1 5913 6161 -5 25 0 0 0 chr1 186969229 186969254 -55695099 + AT_rich Low_complexity Low_complexity 1 25 0 217 272 75 89 chr1 186969724 186969859 -55694494 - MIR SINE MIR -63 145 43 376 61 37 134 chr1 186970988 186971070 -55693283 - L1MA9 LINE L1 -4 6308 6235 3526 137 37 1 chr1 186971077 186971667 -55692686 - LTR38B LTR ERV1 0 611 1 1182 149 45 14 chr1 186971667 186971726 -55692627 - L1MA9 LINE L1 -81 6231 6175 186 43 0 0 chr1 186971726 186971749 -55692604 + (TG)n Simple_repeat Simple_repeat 1 23 0 1182 149 45 14 chr1 186971749 186971910 -55692443 - L1MA9 LINE L1 -137 6175 6004 29 0 0 0 chr1 186971974 186972003 -55692350 + AT_rich Low_complexity Low_complexity 1 29 0 1659 251 14 0 chr1 186972376 186972726 -55691627 - MLT1A1 LTR MaLR -4 361 7 4616 166 32 40 chr1 186972726 186973656 -55690697 - MER49 LTR ERV1 0 923 1 319 311 83 59 chr1 186973708 186974168 -55690185 + L2 LINE L2 1824 2294 -1020 21 36 0 0 chr1 186974865 186974893 -55689460 + AT_rich Low_complexity Low_complexity 1 28 0 188 371 53 23 chr1 186974966 186975098 -55689255 + L2 LINE L2 3137 3272 0 185 334 128 36 chr1 186975917 186976008 -55688345 + L2 LINE L2 2921 3002 -311 1944 138 3 10 chr1 186976008 186976305 -55688048 - AluSx SINE Alu -17 295 1 185 334 128 36 chr1 186976305 186976518 -55687835 + L2 LINE L2 3002 3253 -60 214 333 43 121 chr1 186977457 186977739 -55686614 - L2 LINE L2 -9 3263 3004 427 269 35 102 chr1 186977878 186978134 -55686219 - MIR SINE MIR -21 241 3 285 373 86 25 chr1 186978233 186978560 -55685793 - L2 LINE L2 -534 2780 2434 289 335 114 11 chr1 186978716 186978892 -55685461 - L2 LINE L2 0 3313 3120 546 326 71 17 chr1 186979005 186979244 -55685109 + MIR SINE MIR 3 254 -8 23 0 0 0 chr1 186980784 186980807 -55683546 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 186981221 186981253 -55683100 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 186982058 186982079 -55682274 + AT_rich Low_complexity Low_complexity 1 21 0 1055 234 15 31 chr1 186982313 186982574 -55681779 + MLT2B1 LTR ERVL 264 520 0 204 379 0 0 chr1 186983582 186983648 -55680705 + L2 LINE L2 2986 3051 -221 22 0 0 0 chr1 186983659 186983681 -55680672 + AT_rich Low_complexity Low_complexity 1 22 0 2039 191 35 23 chr1 186983729 186984158 -55680195 - Tigger2a DNA MER2_type 0 434 1 2538 235 25 58 chr1 186984867 186985611 -55678742 - MER72 LTR ERV1 0 722 3 22 0 0 0 chr1 186985871 186985893 -55678460 + AT_rich Low_complexity Low_complexity 1 22 0 5376 148 34 31 chr1 186986392 186987460 -55676893 + MER11C LTR ERVK 1 1071 0 528 325 120 37 chr1 186988843 186989499 -55674854 - L1M4 LINE L1 -1847 4299 3589 1935 173 56 37 chr1 186990012 186990193 -55674160 - L1MC3 LINE L1 -15 7770 7594 1836 118 0 24 chr1 186990193 186990503 -55673850 - AluSg SINE Alu 0 303 1 1935 173 56 37 chr1 186990503 186990749 -55673604 - L1MC3 LINE L1 -191 7594 7334 688 64 0 0 chr1 186990751 186990845 -55673508 + AluY SINE Alu 216 309 -2 501 199 0 66 chr1 186990872 186991008 -55673345 - L1MC3 LINE L1 -459 7326 7200 247 292 14 0 chr1 186991018 186991090 -55673263 - MLT1F1 LTR MaLR -442 125 53 184 289 24 12 chr1 186992604 186992687 -55671666 - MIR SINE MIR -14 248 165 * 279 243 9 75 chr1 186992679 186992786 -55671567 + MIR SINE MIR 163 262 0 1123 257 0 24 chr1 186993386 186993674 -55670679 - AluJo SINE Alu -26 286 6 195 42 0 0 chr1 186993873 186993897 -55670456 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 53 0 0 chr1 186995580 186995618 -55668735 + AT_rich Low_complexity Low_complexity 1 38 0 328 266 191 47 chr1 186995808 186996128 -55668225 + L1ME LINE L1 2479 2844 -3302 1483 227 16 30 chr1 186996135 186996501 -55667852 + L1M2 LINE L1 4 364 -6485 4850 146 45 27 chr1 186996557 186997493 -55666860 + L1MA4 LINE L1 5338 6290 -10 330 250 57 7 chr1 186997531 186997671 -55666682 + L1ME LINE L1 2896 3042 -3104 861 258 66 7 chr1 186997719 186998160 -55666193 + L1ME LINE L1 5053 5515 -651 2036 32 0 0 chr1 186999153 186999400 -55664953 + L1PA4 LINE L1 4893 5139 -1007 7543 23 1 4 chr1 186999405 187000363 -55663990 + L1PA4 LINE L1 5198 6152 -3 29 0 0 0 chr1 187000363 187000392 -55663961 + AT_rich Low_complexity Low_complexity 1 29 0 190 270 32 32 chr1 187000894 187000957 -55663396 - MIR SINE MIR -102 106 44 280 330 53 0 chr1 187001447 187001541 -55662812 - L2 LINE L2 -15 3257 3159 21 36 0 0 chr1 187001971 187001999 -55662354 + AT_rich Low_complexity Low_complexity 1 28 0 238 252 43 108 chr1 187002147 187002202 -55662151 - L2 LINE L2 -1 3312 3255 6654 230 63 59 chr1 187002202 187004407 -55659946 + Charlie1 DNA MER1_type 2 2223 -538 2134 113 0 0 chr1 187004407 187004708 -55659645 + AluY SINE Alu 1 301 -10 6654 230 63 59 chr1 187004708 187005248 -55659105 + Charlie1 DNA MER1_type 2223 2759 -2 238 252 43 108 chr1 187005248 187005331 -55659022 - L2 LINE L2 -58 3255 3183 2445 52 0 3 chr1 187006435 187006742 -55657611 - AluY SINE Alu -5 306 1 1289 86 0 11 chr1 187006960 187007134 -55657219 + AluY SINE Alu 1 172 -139 597 275 34 21 chr1 187007135 187007368 -55656985 - L1MEc LINE L1 -3945 2451 2216 35 0 0 0 chr1 187007369 187007404 -55656949 + AT_rich Low_complexity Low_complexity 1 35 0 3952 161 35 32 chr1 187007404 187008187 -55656166 - L1MB2 LINE L1 -7 6164 5380 29 70 0 0 chr1 187008257 187008314 -55656039 + AT_rich Low_complexity Low_complexity 1 57 0 33 0 0 0 chr1 187008521 187008554 -55655799 + AT_rich Low_complexity Low_complexity 1 33 0 29 28 0 0 chr1 187009059 187009095 -55655258 + AT_rich Low_complexity Low_complexity 1 36 0 28 99 0 0 chr1 187009138 187009229 -55655124 + AT_rich Low_complexity Low_complexity 1 91 0 1612 185 47 72 chr1 187009230 187009673 -55654680 + MSTB1 LTR MaLR 1 432 0 37 52 0 0 chr1 187010711 187010769 -55653584 + AT_rich Low_complexity Low_complexity 1 58 0 324 169 31 15 chr1 187011286 187011351 -55653002 - L1MC/D LINE L1 -2250 5535 5470 2540 226 24 39 chr1 187011445 187012141 -55652212 + MER76 LTR ERV 3 688 0 28 71 0 0 chr1 187012866 187012922 -55651431 + AT_rich Low_complexity Low_complexity 1 56 0 560 236 57 7 chr1 187014818 187014958 -55649395 + LTR52 LTR ERVL 6 152 -269 509 167 19 9 chr1 187015202 187015310 -55649043 + L1MA8 LINE L1 6179 6287 -4 847 362 22 8 chr1 187015916 187016317 -55648036 - LTR16A LTR ERVL -12 438 32 404 286 62 16 chr1 187016621 187016813 -55647540 + LTR41 LTR ERVL 1 201 -572 401 231 28 19 chr1 187017274 187017382 -55646971 + LTR41 LTR ERVL 660 768 -5 632 301 74 34 chr1 187017963 187018288 -55646065 - MLT1J2 LTR MaLR -8 442 105 4149 249 54 12 chr1 187018399 187019562 -55644791 - LTR52-int LTR ERVL 0 3556 2107 4258 197 40 23 chr1 187019744 187020694 -55643659 - LTR52-int LTR ERVL -3590 2095 1130 2250 137 31 28 chr1 187020701 187021080 -55643273 - L1MA6 LINE L1 0 6482 6100 2131 151 5 24 chr1 187021080 187021451 -55642902 + THE1B LTR MaLR 1 364 0 2250 137 31 28 chr1 187021451 187021496 -55642857 - L1MA6 LINE L1 -382 6100 6057 13453 215 43 34 chr1 187021496 187023535 -55640818 - L1MA6 LINE L1 -748 5580 3561 189 0 0 0 chr1 187023535 187023556 -55640797 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 13453 215 43 34 chr1 187023556 187024856 -55639497 - L1MA6 LINE L1 -2767 3561 2274 2037 145 3 0 chr1 187024856 187025167 -55639186 - AluSx SINE Alu 0 312 1 13453 215 43 34 chr1 187025167 187025687 -55638666 - L1MA6 LINE L1 -4054 2274 1760 1397 228 11 7 chr1 187025687 187025972 -55638381 - AluJo SINE Alu -22 290 5 13453 215 43 34 chr1 187025972 187027259 -55637094 - L1MA6 LINE L1 -4568 1760 546 605 271 54 23 chr1 187028113 187028334 -55636019 - LTR52-int LTR ERVL -2539 1017 790 272 368 53 7 chr1 187028342 187028494 -55635859 - LTR52-int LTR ERVL -2884 672 514 1984 214 103 46 chr1 187028537 187029033 -55635320 - LTR52-int LTR ERVL -3030 526 3 1562 243 35 15 chr1 187029034 187029437 -55634916 - LTR52 LTR ERVL -2 419 9 412 371 43 11 chr1 187029666 187029852 -55634501 - LTR33 LTR ERVL -318 203 12 476 303 73 33 chr1 187029954 187030559 -55633794 - L1M4 LINE L1 -1301 4845 4217 343 299 85 28 chr1 187030802 187031013 -55633340 - L1M4 LINE L1 -3436 2710 2488 585 234 0 0 chr1 187031360 187031488 -55632865 + FLAM_C SINE Alu 3 130 -3 1076 251 41 38 chr1 187031604 187031730 -55632623 - MER2 DNA MER2_type 0 345 221 2342 71 0 29 chr1 187031730 187032041 -55632312 + AluY SINE Alu 1 302 -9 1076 251 41 38 chr1 187032041 187032257 -55632096 - MER2 DNA MER2_type -124 221 2 1626 240 85 25 chr1 187032531 187032976 -55631377 + MLT2B2 LTR ERVL 6 477 -38 216 0 0 0 chr1 187032981 187033005 -55631348 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 236 203 17 0 chr1 187033005 187033064 -55631289 + MLT2B2 LTR ERVL 461 520 0 311 254 0 0 chr1 187034023 187034090 -55630263 + AluJ/FLAM SINE Alu 3 69 -233 1768 230 113 18 chr1 187035949 187036553 -55627800 + L1MD2 LINE L1 5695 6355 -4 735 153 0 38 chr1 187036563 187036694 -55627659 + FLAM_C SINE Alu 1 126 -7 1160 175 40 0 chr1 187036758 187036981 -55627372 - L1MC1 LINE L1 -60 6273 6042 2006 228 132 18 chr1 187036983 187037474 -55626879 - MER44D DNA MER2_type -3 602 1 2629 164 91 6 chr1 187037474 187038009 -55626344 - L1MC1 LINE L1 -289 6044 5469 1352 182 11 19 chr1 187038368 187038632 -55625721 - AluJb SINE Alu -9 303 42 990 331 83 34 chr1 187039257 187040003 -55624350 + L2 LINE L2 1604 2386 -928 27 0 0 0 chr1 187040902 187040929 -55623424 + AT_rich Low_complexity Low_complexity 1 27 0 2257 148 5 13 chr1 187041376 187041754 -55622599 - THE1C LTR MaLR 0 375 1 24 0 0 0 chr1 187041983 187042007 -55622346 + AT_rich Low_complexity Low_complexity 1 24 0 208 139 28 0 chr1 187043141 187043177 -55621176 + CT-rich Low_complexity Low_complexity 2 38 0 306 286 175 32 chr1 187043188 187043342 -55621011 - L1MC4 LINE L1 -371 7671 7496 432 0 0 0 chr1 187043380 187043428 -55620925 + (TG)n Simple_repeat Simple_repeat 1 48 0 279 247 0 41 chr1 187043453 187043550 -55620803 - L1MCc LINE L1 -5210 1912 1820 238 293 40 50 chr1 187043790 187043988 -55620365 - L1MCc LINE L1 -5476 947 752 375 225 57 31 chr1 187044372 187044562 -55619791 - L1MCc LINE L1 -5862 694 30 228 244 0 0 chr1 187044612 187044657 -55619696 + L2 LINE L2 3252 3296 -17 276 114 0 0 chr1 187045573 187045617 -55618736 - L1PA7 LINE L1 -3 6151 6108 246 331 68 22 chr1 187046456 187046613 -55617740 + MIR SINE MIR 28 185 -57 2243 72 24 3 chr1 187046906 187047198 -55617155 - AluY SINE Alu -12 299 2 236 321 18 36 chr1 187047467 187047579 -55616774 + L2 LINE L2 2253 2362 -952 862 269 42 27 chr1 187047855 187048115 -55616238 - MLT1H LTR MaLR -285 264 1 1445 170 0 30 chr1 187048389 187048660 -55615693 - THE1C LTR MaLR -112 263 1 211 316 65 118 chr1 187048722 187048848 -55615505 + L2 LINE L2 2584 2715 -599 2213 119 0 0 chr1 187048848 187049158 -55615195 + AluSg SINE Alu 1 310 0 2319 87 0 0 chr1 187049167 187049466 -55614887 + AluY SINE Alu 1 299 -12 211 316 65 118 chr1 187049466 187049728 -55614625 + L2 LINE L2 2723 2961 -353 244 283 22 33 chr1 187049825 187049917 -55614436 + L2 LINE L2 3179 3269 -3 22 56 0 0 chr1 187049927 187049963 -55614390 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr1 187050879 187050907 -55613446 + AT_rich Low_complexity Low_complexity 1 28 0 1940 89 50 4 chr1 187051450 187051731 -55612622 - AluY SINE Alu -11 300 7 24 53 0 0 chr1 187052215 187052253 -55612100 + AT_rich Low_complexity Low_complexity 1 38 0 237 307 29 44 chr1 187052594 187052731 -55611622 - L2 LINE L2 -54 3259 3125 492 59 0 0 chr1 187053031 187053099 -55611254 + (TG)n Simple_repeat Simple_repeat 1 68 0 1604 193 0 50 chr1 187053895 187054196 -55610157 - AluJb SINE Alu -21 291 6 24 32 0 0 chr1 187054747 187054778 -55609575 + AT_rich Low_complexity Low_complexity 1 31 0 849 240 103 20 chr1 187056619 187056939 -55607414 + MSTD LTR MaLR 1 396 0 259 284 0 43 chr1 187057657 187057773 -55606580 + MLT1K LTR MaLR 451 561 -27 21 0 0 0 chr1 187059503 187059524 -55604829 + AT_rich Low_complexity Low_complexity 1 21 0 591 297 89 10 chr1 187059533 187059735 -55604618 - MIR SINE MIR -41 221 4 252 233 14 14 chr1 187062972 187063045 -55601308 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 35 0 0 chr1 187063188 187063217 -55601136 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr1 187063901 187063943 -55600410 + AT_rich Low_complexity Low_complexity 1 42 0 370 259 23 69 chr1 187063948 187064079 -55600274 + L1MC5 LINE L1 7314 7438 -523 4272 203 23 44 chr1 187064128 187065876 -55598477 + L1MA10 LINE L1 4583 6296 -38 225 196 0 0 chr1 187066287 187066343 -55598010 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 35 41 0 0 chr1 187066779 187066828 -55597525 + AT_rich Low_complexity Low_complexity 1 49 0 477 348 21 17 chr1 187067165 187067452 -55596901 + L1MEc LINE L1 19 306 -6090 531 308 29 17 chr1 187067472 187067712 -55596641 + L1MEc LINE L1 362 604 -5792 673 266 36 40 chr1 187067714 187068018 -55596335 - L1M4 LINE L1 -2537 3609 3307 3995 118 142 22 chr1 187068030 187069345 -55595008 - pTR5 LTR ERV1 0 2606 1524 251 228 60 84 chr1 187069349 187069516 -55594837 - L1P LINE L1 -2845 3301 3139 1356 208 123 57 chr1 187069583 187070055 -55594298 - MLT1D LTR MaLR 0 505 3 246 320 76 30 chr1 187070105 187070302 -55594051 - L1MC/D LINE L1 -2220 5588 5383 24 0 0 0 chr1 187070498 187070522 -55593831 + AT_rich Low_complexity Low_complexity 1 24 0 1594 180 134 33 chr1 187070706 187071095 -55593258 + MSTA LTR MaLR 1 428 0 8069 157 79 16 chr1 187071097 187072581 -55591772 + MSTA-int LTR MaLR 3 1580 0 1801 149 149 11 chr1 187072581 187072957 -55591396 + MSTA LTR MaLR 1 428 0 733 276 40 112 chr1 187074129 187074524 -55589829 - MER34 LTR ERV1 -37 505 158 2089 126 3 0 chr1 187074524 187074825 -55589528 - AluSx SINE Alu -10 302 1 733 276 40 112 chr1 187074825 187074973 -55589380 - MER34 LTR ERV1 -384 158 1 279 213 238 12 chr1 187075192 187075272 -55589081 + MER2 DNA MER2_type 1 98 -247 244 311 0 0 chr1 187075275 187075336 -55589017 + MER2 DNA MER2_type 285 345 0 250 288 15 0 chr1 187075338 187075404 -55588949 + CT-rich Low_complexity Low_complexity 2 68 0 234 243 19 19 chr1 187076324 187076427 -55587926 + (TA)n Simple_repeat Simple_repeat 1 103 0 783 266 117 72 chr1 187076905 187077333 -55587020 + MLT1F LTR MaLR 20 466 -76 1391 234 41 38 chr1 187077341 187077796 -55586557 + MLT1C LTR MaLR 1 467 0 316 194 14 0 chr1 187077796 187077867 -55586486 + MLT1F LTR MaLR 494 565 -2 358 338 31 17 chr1 187078000 187078287 -55586066 + MLT1F-int LTR MaLR 311 601 -770 1497 224 148 51 chr1 187078767 187079253 -55585100 + MLT1F LTR MaLR 1 533 -9 2412 90 0 3 chr1 187079388 187079699 -55584654 - AluSg SINE Alu 0 310 1 242 268 0 45 chr1 187079827 187079939 -55584414 + CT-rich Low_complexity Low_complexity 1 107 0 2156 79 13 50 chr1 187080063 187080380 -55583973 + AluY SINE Alu 1 305 -6 313 308 0 0 chr1 187080996 187081087 -55583266 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 1004 232 4 30 chr1 187081347 187081584 -55582769 + MER68 LTR ERV1 332 562 0 207 161 0 0 chr1 187081855 187081886 -55582467 + (TG)n Simple_repeat Simple_repeat 1 31 0 719 216 131 5 chr1 187082101 187082300 -55582053 + MLT1D LTR MaLR 282 505 0 1215 177 43 62 chr1 187082463 187082768 -55581585 + AluJb SINE Alu 1 299 -3 1839 167 6 0 chr1 187084484 187084795 -55579558 - MER6 DNA MER2_type 0 865 293 415 176 0 0 chr1 187084790 187084864 -55579489 - MER6 DNA MER2_type -690 175 102 * 1193 101 0 51 chr1 187084950 187085128 -55579225 + AluSc SINE Alu 133 301 -8 2799 7 0 0 chr1 187085709 187086016 -55578337 + AluYa5 SINE Alu 1 307 -4 214 272 74 12 chr1 187086061 187086142 -55578211 - L2 LINE L2 -207 3065 2980 2088 247 58 86 chr1 187086155 187086492 -55577861 - L1ME1 LINE L1 -4 6162 5817 2582 170 89 27 chr1 187086492 187087052 -55577301 - LTR49 LTR ERV1 0 595 1 2088 247 58 86 chr1 187087052 187087425 -55576928 - L1ME1 LINE L1 -349 5817 5482 1477 203 13 13 chr1 187087425 187087735 -55576618 - AluJo SINE Alu -2 310 1 2088 247 58 86 chr1 187087735 187087957 -55576396 - L1ME1 LINE L1 -684 5482 5255 451 140 11 11 chr1 187088004 187088097 -55576256 + GA-rich Low_complexity Low_complexity 2 94 0 768 103 17 0 chr1 187088117 187088233 -55576120 - LTR24B LTR ERV1 -6 570 453 2815 142 18 2 chr1 187088741 187089191 -55575162 - LTR24B LTR ERV1 -119 457 1 1643 153 12 64 chr1 187089245 187089571 -55574782 + LTR24 LTR ERV1 10 318 -149 228 120 40 20 chr1 187089571 187089621 -55574732 + MER4A LTR ERV1 1 51 -613 1254 164 0 5 chr1 187090061 187090275 -55574078 - Tigger1 DNA MER2_type -3 2415 2203 704 189 8 0 chr1 187090272 187090399 -55573954 - Tigger1 DNA MER2_type -2267 151 24 * 23 0 0 0 chr1 187090435 187090458 -55573895 + AT_rich Low_complexity Low_complexity 1 23 0 470 195 13 13 chr1 187090633 187090792 -55573561 + (TA)n Simple_repeat Simple_repeat 1 159 0 228 152 0 0 chr1 187090792 187090838 -55573515 - LTR66 LTR ERVL -171 439 394 191 163 0 23 chr1 187090844 187090887 -55573466 + (TA)n Simple_repeat Simple_repeat 1 42 0 316 379 35 0 chr1 187091021 187091137 -55573216 - L2 LINE L2 -5 3267 3148 1986 286 53 37 chr1 187091265 187091963 -55572390 - MER21B LTR ERV1 -57 806 98 1675 94 86 0 chr1 187091987 187092231 -55572122 - AluSp SINE Alu -11 302 38 371 217 0 43 chr1 187092269 187092361 -55571992 - MER21B LTR ERV1 -775 88 1 232 359 122 42 chr1 187092459 187092910 -55571443 - L2 LINE L2 -346 2968 2482 1522 326 150 29 chr1 187093200 187093800 -55570553 + L2 LINE L2 1398 1924 -1390 1497 206 124 61 chr1 187093800 187094275 -55570078 + MLT1D LTR MaLR 1 505 0 1522 326 150 29 chr1 187094275 187094934 -55569419 + L2 LINE L2 1924 2809 -505 206 390 19 0 chr1 187095288 187095393 -55568960 - MIR3 SINE MIR -14 194 88 22 35 0 0 chr1 187096228 187096257 -55568096 + AT_rich Low_complexity Low_complexity 1 29 0 505 277 168 32 chr1 187096273 187096493 -55567860 + MIR SINE MIR 12 261 -1 203 276 13 40 chr1 187096532 187096608 -55567745 + CT-rich Low_complexity Low_complexity 6 79 0 228 190 52 0 chr1 187096899 187096957 -55567396 + MER4A LTR ERV1 38 98 -566 1692 143 159 73 chr1 187096957 187097329 -55567024 + MER4A LTR ERV1 261 664 0 648 177 8 16 chr1 187097330 187097454 -55566899 + LTR24 LTR ERV1 316 438 -29 1962 136 4 0 chr1 187097497 187097777 -55566576 - AluSx SINE Alu -31 281 1 303 26 0 0 chr1 187097777 187097816 -55566537 + LTR24 LTR ERV1 429 467 0 497 291 26 41 chr1 187097830 187098098 -55566255 - L1M4 LINE L1 -979 5167 4904 584 338 42 52 chr1 187098708 187099184 -55565169 - MLT1J LTR MaLR -15 496 26 4039 149 13 45 chr1 187099461 187100144 -55564209 + LTR8A LTR ERV1 1 659 -68 4153 130 31 12 chr1 187100144 187100820 -55563533 - LTR8 LTR ERV1 -2 689 1 4039 149 13 45 chr1 187100820 187100887 -55563466 + LTR8A LTR ERV1 659 727 0 3145 200 26 24 chr1 187100891 187101512 -55562841 - MER21B LTR ERV1 -40 823 202 7081 193 15 6 chr1 187101512 187102664 -55561689 + THE1B-int LTR MaLR 419 1580 0 2112 159 28 14 chr1 187102664 187103023 -55561330 + THE1B LTR MaLR 1 364 0 2040 209 158 52 chr1 187103754 187104500 -55559853 - LTR1B LTR ERV1 -1 825 1 21 36 0 0 chr1 187104944 187104972 -55559381 + AT_rich Low_complexity Low_complexity 1 28 0 2226 153 39 29 chr1 187105016 187105505 -55558848 - L1MA7 LINE L1 -6 6285 5792 1211 194 20 12 chr1 187105778 187106031 -55558322 - L1MA7 LINE L1 -507 5784 5530 * 2621 171 47 2 chr1 187106028 187106650 -55557703 + L1MA7 LINE L1 4869 5526 -743 230 345 70 35 chr1 187107727 187107869 -55556484 + MIR SINE MIR 46 192 -70 15105 163 60 10 chr1 187109012 187111726 -55552627 + L1 LINE L1 147 2994 -4571 3748 126 10 5 chr1 187111723 187112303 -55552050 - L1P LINE L1 -1580 4566 3984 * 687 23 0 11 chr1 187112406 187112493 -55551860 + L1PA8A LINE L1 5910 5995 -136 531 122 0 61 chr1 187112494 187112592 -55551761 + L1PA8A LINE L1 6040 6131 0 692 178 48 0 chr1 187112592 187112738 -55551615 + L1 LINE L1 2977 3129 -4436 * 922 122 0 20 chr1 187112728 187112875 -55551478 - L1M1 LINE L1 -4612 2953 2810 * 2634 156 13 29 chr1 187112873 187113494 -55550859 + L1 LINE L1 3138 3751 -3814 7324 185 16 6 chr1 187113496 187114947 -55549406 + L1 LINE L1 4909 6374 -1191 1130 113 51 0 chr1 187115051 187115246 -55549107 + L1MA3 LINE L1 6100 6304 -1 1127 208 4 29 chr1 187115403 187115648 -55548705 - AluJo SINE Alu -73 239 1 586 353 191 18 chr1 187116042 187116979 -55547374 + L2 LINE L2 1867 2965 -349 1708 255 26 23 chr1 187117192 187117777 -55546576 - MER67D LTR ERV1 -3 658 49 1772 127 96 0 chr1 187118073 187118364 -55545989 + L1PA16 LINE L1 5843 6161 -5 21 0 0 0 chr1 187118373 187118394 -55545959 + AT_rich Low_complexity Low_complexity 1 21 0 1416 258 32 38 chr1 187121959 187122523 -55541830 + MLT2F LTR ERVL 1 608 -55 216 263 158 26 chr1 187122760 187122874 -55541479 - MIR SINE MIR -3 259 131 440 305 40 29 chr1 187124757 187124931 -55539422 + L2 LINE L2 3132 3307 -6 1827 140 0 34 chr1 187126084 187126405 -55537948 + AluSx SINE Alu 3 313 0 21 0 0 0 chr1 187127651 187127672 -55536681 + AT_rich Low_complexity Low_complexity 1 21 0 713 130 9 0 chr1 187128111 187128219 -55536134 - LTR8 LTR ERV1 0 691 583 489 241 26 26 chr1 187128219 187128335 -55536018 - AluSp SINE Alu -197 116 1 1193 181 15 52 chr1 187128336 187128606 -55535747 - LTR8 LTR ERV1 -431 260 1 2090 90 14 4 chr1 187128798 187129076 -55535277 + AluSg SINE Alu 23 303 -7 1010 238 17 9 chr1 187129116 187129347 -55535006 - MER87 LTR ERV1 -98 443 211 296 202 96 77 chr1 187129343 187129447 -55534906 - LTR8 LTR ERV1 -560 131 26 * 2307 205 35 44 chr1 187129477 187129625 -55534728 + MLT2B2 LTR ERVL 1 149 -366 2132 128 7 3 chr1 187129625 187129931 -55534422 + AluSc SINE Alu 1 307 -2 2307 205 35 44 chr1 187129931 187130300 -55534053 + MLT2B2 LTR ERVL 149 513 -2 541 299 54 20 chr1 187130372 187130576 -55533777 + MIR SINE MIR 23 233 -29 287 347 153 0 chr1 187132239 187132363 -55531990 - L2 LINE L2 -1 3271 3129 253 390 95 17 chr1 187132712 187132943 -55531410 + MIR SINE MIR 6 254 -8 1556 169 61 9 chr1 187132960 187133303 -55531050 + MER46B DNA MER2_type 1 236 0 351 0 0 0 chr1 187133923 187133962 -55530391 + (T)n Simple_repeat Simple_repeat 1 39 0 578 231 64 13 chr1 187134015 187134171 -55530182 + MER69A DNA AcHobo 1 164 -13 229 243 14 95 chr1 187134405 187134479 -55529874 - MER5B DNA MER1_type -101 77 10 670 301 28 69 chr1 187134660 187135049 -55529304 - L2 LINE L2 -2278 1036 664 24 0 0 0 chr1 187135888 187135912 -55528441 + AT_rich Low_complexity Low_complexity 1 24 0 818 287 101 128 chr1 187137239 187137546 -55526807 - L2 LINE L2 -259 3054 2740 1887 178 0 0 chr1 187137546 187137855 -55526498 + AluJb SINE Alu 1 309 -3 818 287 101 128 chr1 187137855 187137951 -55526402 - L2 LINE L2 -573 2740 2643 2244 68 0 4 chr1 187137951 187138232 -55526121 + AluY SINE Alu 29 308 -3 818 287 101 128 chr1 187138232 187139052 -55525301 - L2 LINE L2 -670 2643 1867 246 286 122 79 chr1 187139062 187139366 -55524987 - L2 LINE L2 -1653 1661 1345 261 313 84 6 chr1 187139541 187139720 -55524633 + L1M4 LINE L1 3752 3944 -2202 22 0 0 0 chr1 187139792 187139814 -55524539 + AT_rich Low_complexity Low_complexity 1 22 0 278 291 76 70 chr1 187140002 187140160 -55524193 - MIR SINE MIR -70 192 34 354 218 29 17 chr1 187140306 187140480 -55523873 + (TTA)n Simple_repeat Simple_repeat 2 177 0 21 36 0 0 chr1 187140728 187140756 -55523597 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr1 187140943 187140987 -55523366 + AT_rich Low_complexity Low_complexity 1 44 0 645 263 77 0 chr1 187141095 187141289 -55523064 + MIR SINE MIR 12 220 -42 551 270 9 77 chr1 187141436 187141658 -55522695 + L2 LINE L2 2459 2665 -649 27 73 0 0 chr1 187141730 187141785 -55522568 + AT_rich Low_complexity Low_complexity 1 55 0 200 254 60 15 chr1 187142935 187143002 -55521351 + MIR SINE MIR 81 150 -112 363 325 93 10 chr1 187143522 187143716 -55520637 + MIR SINE MIR 48 257 -5 502 149 69 0 chr1 187143789 187143876 -55520477 - LTR51 LTR ERV1 0 671 579 * 1431 182 36 72 chr1 187143873 187144235 -55520118 - MER65C LTR ERV1 -112 349 1 322 324 9 19 chr1 187144582 187144690 -55519663 - L2 LINE L2 -8 3305 3199 340 346 58 29 chr1 187145118 187145323 -55519030 - MLT1I LTR MaLR -197 212 2 26 30 0 0 chr1 187145504 187145537 -55518816 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr1 187146600 187146632 -55517721 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr1 187146761 187146796 -55517557 + AT_rich Low_complexity Low_complexity 1 35 0 1746 205 24 24 chr1 187147634 187148015 -55516338 - LTR8 LTR ERV1 0 691 311 207 146 0 0 chr1 187148242 187148283 -55516070 + (TC)n Simple_repeat Simple_repeat 1 41 0 385 303 72 10 chr1 187150046 187150241 -55514112 - MLT1L LTR MaLR -4 611 405 387 186 16 145 chr1 187150419 187150472 -55513881 - L1MA5A LINE L1 -451 5846 5816 243 0 0 0 chr1 187150472 187150499 -55513854 + (TG)n Simple_repeat Simple_repeat 2 28 0 387 186 16 145 chr1 187150499 187150569 -55513784 - L1MA6 LINE L1 -481 5816 5739 2065 194 42 0 chr1 187150570 187151003 -55513350 + L1MA6 LINE L1 5837 6287 -13 2163 260 61 38 chr1 187151247 187152477 -55511876 - L1ME2 LINE L1 -1 6163 4901 947 171 10 0 chr1 187152484 187152677 -55511676 - L1MA7 LINE L1 0 6291 6097 1051 156 36 53 chr1 187152677 187152902 -55511451 + L1MA7 LINE L1 5854 6074 -217 416 277 112 30 chr1 187152987 187153416 -55510937 - L1ME2 LINE L1 -1302 4844 4381 968 281 117 20 chr1 187153428 187154180 -55510173 - L1ME2 LINE L1 -2872 3274 2450 1176 210 65 36 chr1 187154192 187154499 -55509854 + AluJb SINE Alu 1 315 0 410 146 207 0 chr1 187154601 187154749 -55509604 + AluJb SINE Alu 186 350 0 228 67 0 0 chr1 187154761 187154791 -55509562 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1233 88 71 0 chr1 187154801 187154971 -55509382 - AluSg SINE Alu -119 191 10 405 256 34 28 chr1 187154975 187155151 -55509202 - L1ME2 LINE L1 -3724 2422 2246 7728 160 22 33 chr1 187155169 187156848 -55507505 - L1MA2 LINE L1 -1 7722 6045 317 157 0 0 chr1 187156848 187156899 -55507454 - MADE1 DNA Mariner -29 51 1 7728 160 22 33 chr1 187156899 187157872 -55506481 - L1MA2 LINE L1 -1678 6045 5063 802 242 0 0 chr1 187157876 187158058 -55506295 - L1MA2 LINE L1 -3519 4046 3865 8971 142 117 32 chr1 187158063 187159862 -55504491 - L1MA2 LINE L1 -4215 3350 1399 574 219 46 20 chr1 187159851 187160002 -55504351 - L1MA2 LINE L1 -7395 170 16 * 22 70 0 0 chr1 187160317 187160360 -55503993 + AT_rich Low_complexity Low_complexity 1 43 0 1629 195 3 7 chr1 187160696 187161003 -55503350 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr1 187161043 187161065 -55503288 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr1 187161180 187161213 -55503140 + AT_rich Low_complexity Low_complexity 1 33 0 193 107 40 67 chr1 187161213 187161288 -55503065 + (TATAA)n Simple_repeat Simple_repeat 4 76 0 244 200 0 43 chr1 187161366 187161436 -55502917 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 712 259 0 6 chr1 187161549 187161719 -55502634 - AluJb SINE Alu -84 228 60 22 0 0 0 chr1 187162351 187162373 -55501980 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 187162411 187162434 -55501919 + AT_rich Low_complexity Low_complexity 1 23 0 298 281 0 22 chr1 187162461 187162550 -55501803 - MLT1H LTR MaLR -410 139 53 459 333 54 42 chr1 187163352 187163613 -55500740 - MLT1I LTR MaLR -7 402 139 836 259 68 8 chr1 187164332 187164595 -55499758 + MER46C DNA MER2_type 4 282 -56 180 0 0 0 chr1 187164849 187164869 -55499484 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1325 204 40 14 chr1 187164872 187165147 -55499206 - AluJo SINE Alu -30 282 1 679 309 63 4 chr1 187165407 187165659 -55498694 - MLT1J LTR MaLR -244 267 1 2430 37 0 0 chr1 187165755 187166050 -55498303 - L1PA3 LINE L1 -1307 4839 4545 7494 28 8 0 chr1 187166050 187167353 -55497000 + L1PA3 LINE L1 4846 6155 0 559 272 33 110 chr1 187167398 187167670 -55496683 + MER93a LTR ERV1 67 346 -56 278 397 16 0 chr1 187167807 187167933 -55496420 + L3 LINE CR1 995 1122 -455 1838 206 3 11 chr1 187168055 187168419 -55495934 - MLT1A1 LTR MaLR -2 363 3 335 209 44 0 chr1 187168831 187168922 -55495431 + MER103 DNA DNA 70 164 -2 207 164 55 36 chr1 187169274 187169329 -55495024 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 * 302 196 36 18 chr1 187169298 187169410 -55494943 + (TATAA)n Simple_repeat Simple_repeat 5 118 0 246 167 100 0 chr1 187169669 187169729 -55494624 - MER110A LTR ERV1 -153 315 250 429 190 100 0 chr1 187169852 187169952 -55494401 - MER110A LTR ERV1 -306 162 53 442 330 81 11 chr1 187170835 187171096 -55493257 - MER110 LTR ERV1 -7 484 206 2679 179 14 68 chr1 187172123 187172167 -55492186 - MLT2B3 LTR ERVL 0 554 509 195 42 0 0 chr1 187172167 187172191 -55492162 + (TG)n Simple_repeat Simple_repeat 2 25 0 2679 179 14 68 chr1 187172191 187172209 -55492144 - MLT2B3 LTR ERVL -45 509 492 198 0 0 0 chr1 187172209 187172231 -55492122 + (GA)n Simple_repeat Simple_repeat 2 23 0 2679 179 14 68 chr1 187172231 187172753 -55491600 - MLT2B3 LTR ERVL -62 492 1 2794 13 0 0 chr1 187173491 187173801 -55490552 - AluYb8 SINE Alu -8 310 1 932 266 179 43 chr1 187174861 187175441 -55488912 + L2 LINE L2 1938 2596 -718 317 353 31 46 chr1 187175459 187175489 -55488864 + L2 LINE L2 2782 2811 -502 2328 62 0 23 chr1 187175489 187175795 -55488558 + AluY SINE Alu 1 299 -12 317 353 31 46 chr1 187175795 187175934 -55488419 + L2 LINE L2 2811 2949 -364 240 35 0 0 chr1 187175934 187175963 -55488390 + (TTA)n Simple_repeat Simple_repeat 2 30 0 317 353 31 46 chr1 187175963 187176053 -55488300 + L2 LINE L2 2949 3039 -274 645 93 0 0 chr1 187176199 187176285 -55488068 - THE1C LTR MaLR 0 375 290 1220 287 90 31 chr1 187176288 187177751 -55486602 - L1MEc LINE L1 -3395 2820 1315 198 191 11 43 chr1 187177761 187177855 -55486498 + (CATA)n Simple_repeat Simple_repeat 2 92 0 23 78 0 0 chr1 187178036 187178087 -55486266 + AT_rich Low_complexity Low_complexity 1 51 0 23 33 0 0 chr1 187178152 187178182 -55486171 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 187178687 187178708 -55485645 + AT_rich Low_complexity Low_complexity 1 21 0 286 178 40 6 chr1 187179215 187179389 -55484964 + (TA)n Simple_repeat Simple_repeat 1 180 0 582 194 70 31 chr1 187179512 187179641 -55484712 + Tigger3(Golem) DNA MER2_type 1 134 -2895 1285 137 120 17 chr1 187179650 187179884 -55484469 + Tigger3(Golem) DNA MER2_type 2781 3038 0 1201 171 37 19 chr1 187179926 187180142 -55484211 - AluJb SINE Alu -13 299 80 322 253 209 47 chr1 187180146 187180399 -55483954 + MER50 LTR ERV1 10 303 -431 599 221 0 16 chr1 187180410 187180537 -55483816 - LTR18A LTR ERVL 0 357 233 869 230 0 6 chr1 187180586 187180751 -55483602 - HERVL18 LTR ERVL -5882 165 2 742 236 70 23 chr1 187180772 187181320 -55483033 - LTR18A LTR ERVL -2 355 1 1092 198 17 128 chr1 187181335 187181811 -55482542 + MER50 LTR ERV1 312 734 0 489 175 0 0 chr1 187181811 187181891 -55482462 - AluJb SINE Alu -227 85 6 495 326 52 10 chr1 187183839 187184032 -55480321 - MIR SINE MIR -14 248 48 24 32 0 0 chr1 187184184 187184215 -55480138 + AT_rich Low_complexity Low_complexity 1 31 0 268 310 118 32 chr1 187184553 187184740 -55479613 - L2 LINE L2 -920 2394 2192 21 36 0 0 chr1 187184922 187184950 -55479403 + AT_rich Low_complexity Low_complexity 1 28 0 1422 171 69 11 chr1 187185580 187185854 -55478499 - AluJb SINE Alu -10 302 13 269 291 0 12 chr1 187185923 187185969 -55478384 + (TATG)n Simple_repeat Simple_repeat 4 50 -38 1056 191 15 0 chr1 187185969 187186168 -55478185 + MER6B DNA MER2_type 5 206 -4 269 291 0 12 chr1 187186168 187186207 -55478146 + (TATG)n Simple_repeat Simple_repeat 50 88 0 1164 259 76 78 chr1 187187130 187187479 -55476874 - MER21B LTR ERV1 -127 736 387 3550 176 47 41 chr1 187187479 187188254 -55476099 - LTR19C LTR ERV1 0 779 1 1164 259 76 78 chr1 187188254 187188509 -55475844 - MER21B LTR ERV1 -476 387 133 326 289 0 10 chr1 187188557 187188654 -55475699 - L1ME LINE L1 -341 5780 5685 185 65 32 0 chr1 187188751 187188782 -55475571 + (TC)n Simple_repeat Simple_repeat 1 32 0 399 21 0 0 chr1 187188782 187188830 -55475523 + (TG)n Simple_repeat Simple_repeat 1 48 0 823 140 15 0 chr1 187188830 187188966 -55475387 - L1MA9 LINE L1 -161 6151 6014 5643 116 15 19 chr1 187189188 187190623 -55473730 + L1PA11 LINE L1 4751 6166 -8 357 217 43 52 chr1 187191961 187192076 -55472277 - LTR33 LTR ERVL -405 116 3 322 254 188 54 chr1 187192482 187192706 -55471647 - MLT1H1 LTR MaLR -45 510 251 387 142 91 10 chr1 187193783 187194097 -55470256 + (TA)n Simple_repeat Simple_repeat 1 339 0 214 49 24 24 chr1 187194114 187194155 -55470198 + (TTATA)n Simple_repeat Simple_repeat 5 45 0 197 62 83 0 chr1 187194318 187194366 -55469987 + (TA)n Simple_repeat Simple_repeat 1 52 0 291 140 0 0 chr1 187195225 187195275 -55469078 + (TG)n Simple_repeat Simple_repeat 1 50 0 270 393 16 22 chr1 187195869 187196052 -55468301 - MER5A DNA MER1_type -3 186 5 21 0 0 0 chr1 187196156 187196177 -55468176 + AT_rich Low_complexity Low_complexity 1 21 0 2168 114 0 0 chr1 187197429 187197727 -55466626 - AluY SINE Alu -10 301 4 210 361 84 37 chr1 187197744 187197935 -55466418 - L3 LINE CR1 -134 1443 1244 486 0 0 0 chr1 187198220 187198274 -55466079 + (CA)n Simple_repeat Simple_repeat 2 55 0 3795 199 87 33 chr1 187198494 187199268 -55465085 + MER52A LTR ERV1 1 731 -1024 2084 69 3 78 chr1 187199268 187199587 -55464766 + AluY SINE Alu 1 295 -16 3795 199 87 33 chr1 187199587 187200336 -55464017 + MER52A LTR ERV1 731 1755 0 446 258 57 50 chr1 187201942 187202101 -55462252 - MER63A DNA MER1_type -8 202 43 314 300 17 58 chr1 187202441 187202561 -55461792 + L2 LINE L2 3199 3313 0 1416 211 0 20 chr1 187203461 187203764 -55460589 + AluJo SINE Alu 1 297 -15 255 229 0 12 chr1 187203839 187203922 -55460431 + (TA)n Simple_repeat Simple_repeat 2 83 0 21 0 0 0 chr1 187204314 187204335 -55460018 + AT_rich Low_complexity Low_complexity 1 21 0 890 210 18 31 chr1 187204693 187204917 -55459436 + MER106A DNA MER1_type 1 221 -15 393 145 43 2 chr1 187205143 187205277 -55459076 - MER53 DNA DNA -2 187 18 1433 222 93 23 chr1 187206283 187206730 -55457623 + MER31A LTR ERV1 6 661 0 23 86 0 0 chr1 187207152 187207210 -55457143 + AT_rich Low_complexity Low_complexity 1 58 0 2335 84 3 0 chr1 187207367 187207665 -55456688 + AluY SINE Alu 1 299 -12 1952 114 0 0 chr1 187208161 187208457 -55455896 - AluSq SINE Alu 0 317 22 246 348 52 7 chr1 187208736 187208871 -55455482 + L2 LINE L2 2906 3046 -226 376 334 38 91 chr1 187209403 187209723 -55454630 - L2 LINE L2 -338 2976 2674 19174 190 37 15 chr1 187209842 187213970 -55450383 + L1P LINE L1 831 5048 -1098 24 61 0 0 chr1 187214671 187214704 -55449649 + AT_rich Low_complexity Low_complexity 1 33 0 845 250 28 9 chr1 187215207 187215419 -55448934 + L1ME LINE L1 5493 5708 -462 37 26 0 0 chr1 187215435 187215474 -55448879 + AT_rich Low_complexity Low_complexity 1 39 0 37 0 0 0 chr1 187215521 187215558 -55448795 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr1 187215648 187215678 -55448675 + AT_rich Low_complexity Low_complexity 1 30 0 296 188 14 29 chr1 187215686 187215755 -55448598 + L1ME LINE L1 5764 5831 -339 417 341 78 58 chr1 187216895 187217379 -55446974 + L2 LINE L2 2820 3313 0 475 234 19 2 chr1 187217473 187217620 -55446733 - MER58B DNA MER1_type -1 340 37 21 36 0 0 chr1 187220025 187220053 -55444300 + AT_rich Low_complexity Low_complexity 1 28 0 430 0 67 0 chr1 187220679 187220739 -55443614 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 543 78 55 1 chr1 187220889 187220991 -55443362 - THE1-int LTR MaLR -1447 133 41 1283 73 36 122 chr1 187220993 187221240 -55443113 - AluY SINE Alu -14 297 72 301 120 0 20 chr1 187221240 187221290 -55443063 - MSTA-int LTR MaLR -1602 49 1 1875 164 138 5 chr1 187221290 187221668 -55442685 - MSTA LTR MaLR 0 428 1 4783 156 17 4 chr1 187221939 187222752 -55441601 - L1PA15 LINE L1 -6 6159 5330 270 344 8 23 chr1 187225602 187225733 -55438620 + L3 LINE CR1 649 777 -800 1500 282 67 19 chr1 187226404 187227050 -55437303 + MER20B DNA MER1_type 28 704 -79 22 0 0 0 chr1 187227666 187227688 -55436665 + AT_rich Low_complexity Low_complexity 1 22 0 327 309 134 19 chr1 187228453 187228722 -55435631 + MLT1F LTR MaLR 243 542 0 926 331 61 37 chr1 187228747 187229617 -55434736 + Charlie7 DNA MER1_type 117 1007 -1605 229 157 48 24 chr1 187229683 187229766 -55434587 + CT-rich Low_complexity Low_complexity 3 87 0 287 241 105 30 chr1 187230220 187230353 -55434000 - MER112 DNA MER1_type -50 210 68 2998 188 13 8 chr1 187231192 187231306 -55433047 + LTR26B LTR ERV1 1 113 -418 2442 147 29 5 chr1 187231306 187231722 -55432631 - MSTB LTR MaLR 0 426 1 2998 188 13 8 chr1 187231722 187232135 -55432218 + LTR26B LTR ERV1 113 531 0 1174 271 12 64 chr1 187233618 187234038 -55430315 + LTR40b LTR ERVL 1 398 -64 934 245 68 53 chr1 187234889 187235458 -55428895 - L1MCb LINE L1 -4475 2089 1420 2157 241 42 21 chr1 187235460 187236253 -55428100 - L1MCb LINE L1 -4851 1194 570 539 29 14 0 chr1 187236382 187236451 -55427902 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 961 268 50 84 chr1 187236493 187237016 -55427337 - L1MCb LINE L1 -5613 432 3 21 89 0 0 chr1 187237028 187237084 -55427269 + AT_rich Low_complexity Low_complexity 1 56 0 185 318 39 31 chr1 187240044 187240173 -55424180 + L2 LINE L2 1882 2011 -1303 1126 42 0 7 chr1 187240766 187240909 -55423444 - L1PA4 LINE L1 -1 6154 6013 470 255 10 0 chr1 187242912 187243010 -55421343 - MER5A DNA MER1_type -81 108 10 192 324 20 39 chr1 187243033 187243135 -55421218 - MER5A DNA MER1_type -6 183 84 220 189 19 19 chr1 187243664 187243717 -55420636 + (TA)n Simple_repeat Simple_repeat 1 53 0 396 346 38 28 chr1 187243722 187243933 -55420420 - L2 LINE L2 -624 2690 2478 417 107 0 0 chr1 187244159 187244247 -55420106 - AluJo SINE Alu 0 314 227 901 217 16 11 chr1 187244250 187244434 -55419919 - AluJo SINE Alu -127 185 1 207 0 0 0 chr1 187244506 187244529 -55419824 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1868 104 0 4 chr1 187244532 187244782 -55419571 - AluSc SINE Alu -14 295 47 5150 129 17 2 chr1 187245858 187246992 -55417361 - L1PA16 LINE L1 -9 6157 4987 21 57 0 0 chr1 187247005 187247040 -55417313 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr1 187247157 187247190 -55417163 + AT_rich Low_complexity Low_complexity 1 33 0 730 68 0 19 chr1 187247198 187247301 -55417052 + L1PA7 LINE L1 6052 6152 -2 24 0 0 0 chr1 187247551 187247575 -55416778 + AT_rich Low_complexity Low_complexity 1 24 0 269 325 24 24 chr1 187247639 187247756 -55416597 - MER5B DNA MER1_type -3 175 70 322 281 100 32 chr1 187248036 187248285 -55416068 - HAL1 LINE L1 -897 1610 1345 1037 51 28 23 chr1 187248680 187248856 -55415497 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 246 348 43 17 chr1 187251474 187251589 -55412764 + MIR SINE MIR 36 153 -55 395 165 0 88 chr1 187251594 187251685 -55412668 - L1MC1 LINE L1 -239 6094 6012 1400 169 4 0 chr1 187251689 187251932 -55412421 + L1MC1 LINE L1 6085 6328 -5 21 0 0 0 chr1 187251945 187251966 -55412387 + AT_rich Low_complexity Low_complexity 1 21 0 2092 117 0 10 chr1 187252077 187252376 -55411977 + AluSc SINE Alu 1 296 -13 24 53 0 0 chr1 187253858 187253896 -55410457 + AT_rich Low_complexity Low_complexity 1 38 0 201 129 0 0 chr1 187253909 187253940 -55410413 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 273 98 0 0 chr1 187254067 187254108 -55410245 + (CA)n Simple_repeat Simple_repeat 2 42 0 298 325 57 23 chr1 187254847 187255112 -55409241 + L1MC/D LINE L1 5291 5564 -2244 3600 148 19 5 chr1 187255175 187255770 -55408583 - LTR26 LTR ERV1 0 603 1 531 298 119 51 chr1 187255836 187256189 -55408164 + MLT1J1 LTR MaLR 64 440 -6 1312 256 34 61 chr1 187256435 187256993 -55407360 - L1ME1 LINE L1 -82 7044 6502 1971 272 108 36 chr1 187257014 187257347 -55407006 - L1ME1 LINE L1 -4093 3015 2707 1295 158 49 4 chr1 187257347 187257613 -55406740 - L1MA7 LINE L1 -3 6288 6011 1971 272 108 36 chr1 187257613 187259452 -55404901 - L1ME1 LINE L1 -4401 2707 1 951 270 132 17 chr1 187259456 187259874 -55404479 - L1M4 LINE L1 -1276 4870 4405 513 136 195 34 chr1 187259920 187260038 -55404315 + MER1B DNA MER1_type 203 339 0 226 323 0 0 chr1 187260356 187260418 -55403935 - MER5A DNA MER1_type 0 189 128 1598 344 77 41 chr1 187260790 187261979 -55402374 + L2 LINE L2 350 1580 -1734 527 360 122 7 chr1 187262062 187262487 -55401866 + L2 LINE L2 2237 2710 -604 204 309 99 12 chr1 187262564 187262645 -55401708 + L2 LINE L2 2731 2818 -496 593 393 50 11 chr1 187262866 187263304 -55401049 + L2 LINE L2 2854 3308 -5 1832 174 38 3 chr1 187263446 187263762 -55400591 - Tigger1 DNA MER2_type -2066 352 26 1422 201 66 13 chr1 187263774 187264092 -55400261 - LTR42 LTR ERVL -155 340 6 202 194 0 0 chr1 187264340 187264376 -55399977 + GA-rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr1 187265306 187265339 -55399014 + AT_rich Low_complexity Low_complexity 1 33 0 402 365 28 24 chr1 187265496 187265745 -55398608 - L2 LINE L2 -1695 1619 1370 735 320 82 26 chr1 187265764 187266154 -55398199 - L2 LINE L2 -2075 1239 828 328 233 52 43 chr1 187266177 187266293 -55398060 - MER112 DNA MER1_type -37 223 107 2084 99 3 7 chr1 187266329 187266655 -55397698 - AluSx SINE Alu 0 325 1 5155 178 19 32 chr1 187266661 187267338 -55397015 - L1MC1 LINE L1 -13 6320 5636 1396 201 34 10 chr1 187267338 187267636 -55396717 - AluJb SINE Alu -7 305 1 5155 178 19 32 chr1 187267636 187267723 -55396630 - L1MC1 LINE L1 -697 5636 5549 1548 215 0 13 chr1 187267723 187268034 -55396319 + AluJb SINE Alu 1 307 -5 5155 178 19 32 chr1 187268034 187268316 -55396037 - L1MC1 LINE L1 -784 5549 5287 228 228 0 0 chr1 187268557 187268614 -55395739 - L1MC1 LINE L1 -3214 2932 2876 265 242 0 0 chr1 187268868 187268930 -55395423 - L1MC1 LINE L1 -3632 2514 2453 356 250 97 49 chr1 187269524 187269668 -55394685 + MIR SINE MIR 62 212 -50 27 49 0 0 chr1 187270627 187270668 -55393685 + AT_rich Low_complexity Low_complexity 1 41 0 24 67 0 0 chr1 187271493 187271538 -55392815 + AT_rich Low_complexity Low_complexity 1 45 0 197 279 16 33 chr1 187272080 187272141 -55392212 - L2 LINE L2 -3 3269 3210 826 243 25 45 chr1 187272959 187273202 -55391151 - Charlie1 DNA MER1_type -2522 239 2 255 271 61 99 chr1 187273222 187273476 -55390877 - L1ME LINE L1 -344 5818 5585 1900 177 0 0 chr1 187273476 187273786 -55390567 + AluSx SINE Alu 3 312 0 255 271 61 99 chr1 187273786 187273956 -55390397 - L1ME LINE L1 -577 5585 5410 281 271 114 19 chr1 187274074 187274284 -55390069 - L1MC1 LINE L1 -3764 2382 2153 255 31 0 0 chr1 187274397 187274429 -55389924 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 29 60 0 0 chr1 187274615 187274665 -55389688 + AT_rich Low_complexity Low_complexity 1 50 0 786 281 19 90 chr1 187274795 187275114 -55389239 + L1MCa LINE L1 798 1138 -5288 1504 191 30 57 chr1 187275114 187275486 -55388867 - THE1B LTR MaLR 0 364 3 786 281 19 90 chr1 187275486 187275592 -55388761 + L1MCa LINE L1 1138 1184 -5242 1958 156 10 0 chr1 187275592 187275894 -55388459 + AluSx SINE Alu 1 305 -7 786 281 19 90 chr1 187275894 187275980 -55388373 + L1MCa LINE L1 1184 1274 -5152 259 149 44 49 chr1 187276008 187276090 -55388263 - L1MEc LINE L1 -4634 1890 1728 1993 161 45 31 chr1 187276119 187276541 -55387812 + MSTC LTR MaLR 1 428 0 220 227 23 0 chr1 187276681 187276769 -55387584 + (TA)n Simple_repeat Simple_repeat 1 90 0 883 193 11 28 chr1 187278459 187278640 -55385713 - MLT1A1 LTR MaLR 0 365 188 3646 98 26 35 chr1 187278640 187279708 -55384645 - MER11A LTR ERVK 0 1266 1 814 205 14 79 chr1 187279708 187279740 -55384613 - MLT1A1 LTR MaLR -176 189 156 2806 3 0 0 chr1 187279740 187280046 -55384307 - AluY SINE Alu -5 306 1 814 205 14 79 chr1 187280046 187280216 -55384137 - MLT1A1 LTR MaLR -209 156 1 435 275 43 14 chr1 187280550 187280688 -55383665 + L1MEc LINE L1 584 725 -5394 1959 121 52 3 chr1 187280711 187281001 -55383352 + AluSq SINE Alu 1 304 -9 261 0 0 0 chr1 187281034 187281063 -55383290 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 317 318 0 9 chr1 187281377 187281487 -55382866 - MLT1H LTR MaLR -381 168 60 285 280 50 54 chr1 187281619 187281898 -55382455 + L1MEc LINE L1 925 1202 -4917 2707 221 5 5 chr1 187281941 187282498 -55381855 - MER41D LTR ERV1 0 557 1 340 253 94 75 chr1 187282582 187282874 -55381479 + L1MEc LINE L1 1418 1670 -863 337 302 0 0 chr1 187283130 187283256 -55381097 + A-rich Low_complexity Low_complexity 1 126 0 516 299 80 64 chr1 187283349 187283640 -55380713 + L1MEc LINE L1 2186 2490 -3639 1322 230 91 65 chr1 187283640 187284145 -55380208 - MLT2B1 LTR ERVL 0 520 3 516 299 80 64 chr1 187284145 187284354 -55379999 + L1MEc LINE L1 2490 2694 -3435 28 29 0 0 chr1 187284490 187284525 -55379828 + AT_rich Low_complexity Low_complexity 1 35 0 649 249 6 28 chr1 187284555 187284736 -55379617 + MER20 DNA MER1_type 43 219 0 245 184 0 13 chr1 187284738 187284814 -55379539 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 31 58 0 0 chr1 187284829 187284881 -55379472 + AT_rich Low_complexity Low_complexity 1 52 0 2409 72 0 0 chr1 187285375 187285682 -55378671 - AluY SINE Alu -4 307 1 499 239 59 45 chr1 187287276 187287498 -55376855 - MER106A DNA MER1_type -1 235 11 2465 63 0 0 chr1 187288369 187288671 -55375682 + AluY SINE Alu 1 302 -9 2006 150 0 0 chr1 187289117 187289403 -55374950 + AluSx SINE Alu 1 286 -26 354 80 0 0 chr1 187289403 187289453 -55374900 + (TA)n Simple_repeat Simple_repeat 2 51 0 1257 150 0 43 chr1 187289761 187289995 -55374358 + AluJb SINE Alu 87 310 -2 1249 232 30 21 chr1 187290772 187291108 -55373245 - L1ME3A LINE L1 -339 5831 5493 25 0 0 0 chr1 187291611 187291636 -55372717 + AT_rich Low_complexity Low_complexity 1 25 0 259 188 38 25 chr1 187292942 187293022 -55371331 + GA-rich Low_complexity Low_complexity 5 85 0 190 227 73 73 chr1 187293038 187293148 -55371205 - MER5C DNA MER1_type -1 323 214 609 362 47 30 chr1 187293283 187293689 -55370664 + L2 LINE L2 1888 2300 -1014 234 263 0 0 chr1 187294168 187294225 -55370128 + L1ME LINE L1 5792 5848 -273 283 284 57 0 chr1 187294289 187294377 -55369976 + U6 snRNA snRNA 11 103 -4 248 217 0 29 chr1 187294852 187294921 -55369432 + (TA)n Simple_repeat Simple_repeat 2 68 0 22 56 0 0 chr1 187294996 187295032 -55369321 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 187295528 187295549 -55368804 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 187295624 187295659 -55368694 + AT_rich Low_complexity Low_complexity 1 35 0 598 254 41 6 chr1 187295866 187296035 -55368318 - MLT1H LTR MaLR -374 175 1 34 55 0 0 chr1 187296682 187296737 -55367616 + AT_rich Low_complexity Low_complexity 1 55 0 1469 200 118 53 chr1 187297197 187297648 -55366705 - MER34B LTR ERV1 -75 490 11 53 30 0 0 chr1 187297689 187297756 -55366597 + AT_rich Low_complexity Low_complexity 1 67 0 25 0 0 0 chr1 187298038 187298063 -55366290 + AT_rich Low_complexity Low_complexity 1 25 0 2419 77 0 3 chr1 187298650 187298962 -55365391 + AluY SINE Alu 1 311 0 429 222 0 0 chr1 187298968 187299067 -55365286 + (CATA)n Simple_repeat Simple_repeat 2 100 0 579 297 52 62 chr1 187300957 187301361 -55362992 + MLT1J1 LTR MaLR 21 420 -26 1126 154 0 0 chr1 187301808 187301990 -55362363 - L1PA12 LINE L1 -7384 197 16 5087 111 3 0 chr1 187301990 187302728 -55361625 + L1PA13 LINE L1 5419 6158 -5 2057 136 61 9 chr1 187302933 187303279 -55361074 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr1 187304040 187304070 -55360283 + AT_rich Low_complexity Low_complexity 1 30 0 2451 124 6 0 chr1 187304101 187304463 -55359890 - THE1B LTR MaLR 0 364 1 1350 128 5 0 chr1 187304463 187304667 -55359686 - THE1B-int LTR MaLR 0 1580 1376 391 188 0 0 chr1 187304666 187304735 -55359618 - THE1B-int LTR MaLR -1511 69 1 * 1897 130 61 8 chr1 187304735 187305052 -55359301 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr1 187305348 187305370 -55358983 + AT_rich Low_complexity Low_complexity 1 22 0 8184 145 65 12 chr1 187305399 187306854 -55357499 + Tigger1 DNA MER2_type 2 1534 -884 1745 150 91 19 chr1 187306853 187307214 -55357139 + Tigger1 DNA MER2_type 2031 2417 -1 * 35 41 0 0 chr1 187307222 187307271 -55357082 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr1 187307303 187307339 -55357014 + AT_rich Low_complexity Low_complexity 1 36 0 810 229 17 6 chr1 187307365 187307540 -55356813 - FRAM SINE Alu -3 173 1 1581 244 37 86 chr1 187307979 187308628 -55355725 - MLT1E3 LTR MaLR -7 617 1 1846 149 0 50 chr1 187308921 187309242 -55355111 + AluJb SINE Alu 1 305 -7 27 29 0 0 chr1 187310365 187310399 -55353954 + AT_rich Low_complexity Low_complexity 1 34 0 288 91 68 11 chr1 187310748 187310836 -55353517 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 243 216 0 0 chr1 187311117 187311168 -55353185 + L1MC3 LINE L1 7417 7467 -318 36 23 0 0 chr1 187311233 187311276 -55353077 + AT_rich Low_complexity Low_complexity 1 43 0 1069 278 50 35 chr1 187311287 187311806 -55352547 - LTR38 LTR ERV1 0 556 30 1821 157 15 9 chr1 187311820 187312158 -55352195 - L1MA8 LINE L1 -27 6264 5925 418 155 0 0 chr1 187312158 187312229 -55352124 + L1MA8 LINE L1 5840 5910 -402 22 56 0 0 chr1 187312639 187312675 -55351678 + AT_rich Low_complexity Low_complexity 1 36 0 193 351 0 0 chr1 187314137 187314194 -55350159 + L2 LINE L2 3212 3268 -4 216 158 0 0 chr1 187314642 187314680 -55349673 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 0 48 0 chr1 187315877 187315919 -55348434 + (TA)n Simple_repeat Simple_repeat 2 45 0 22350 101 8 4 chr1 187315961 187320027 -55344326 - L1PA7 LINE L1 -4 6150 2071 2103 94 0 47 chr1 187320291 187320610 -55343743 - AluY SINE Alu -7 304 1 4218 166 37 24 chr1 187321107 187321985 -55342368 - MER4D LTR ERV1 0 866 2 202 103 0 0 chr1 187322073 187322102 -55342251 - MIR SINE MIR -160 102 74 3828 159 23 18 chr1 187323969 187324699 -55339654 - MER50 LTR ERV1 0 734 1 21 0 0 0 chr1 187324845 187324866 -55339487 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 187325086 187325108 -55339245 + AT_rich Low_complexity Low_complexity 1 22 0 226 50 50 0 chr1 187325138 187325178 -55339175 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 453 318 28 65 chr1 187325361 187325685 -55338668 + L1ME3A LINE L1 5088 5399 -747 923 285 36 29 chr1 187325707 187326118 -55338235 + L1ME3A LINE L1 5538 5951 -219 28 29 0 0 chr1 187326406 187326441 -55337912 + AT_rich Low_complexity Low_complexity 1 35 0 183 330 94 19 chr1 187326502 187326608 -55337745 - L2 LINE L2 -4 3309 3196 297 287 0 32 chr1 187328216 187328310 -55336043 - L2 LINE L2 0 3313 3223 5957 113 24 9 chr1 187328368 187329750 -55334603 - L1PA14 LINE L1 -4 6157 4765 1042 93 0 7 chr1 187330001 187330141 -55334212 + AluSq/x SINE Alu 1 139 -174 281 100 20 0 chr1 187330143 187330193 -55334160 + (TA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr1 187331327 187331357 -55332996 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr1 187332269 187332289 -55332064 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 182 91 30 0 chr1 187332782 187332815 -55331538 + (TA)n Simple_repeat Simple_repeat 1 34 0 213 281 18 0 chr1 187334581 187334638 -55329715 + (TA)n Simple_repeat Simple_repeat 1 58 0 261 139 23 0 chr1 187334639 187334682 -55329671 + MSTB1 LTR MaLR 1 44 -388 411 141 12 0 chr1 187334682 187334767 -55329586 - L1MA4A LINE L1 -4 6299 6214 2474 142 35 72 chr1 187334771 187335286 -55329067 - L1MA4A LINE L1 -233 6070 5575 1822 192 40 13 chr1 187335290 187335665 -55328688 + MSTB1 LTR MaLR 38 422 -10 585 299 97 27 chr1 187336513 187336983 -55327370 + L1M4c LINE L1 1517 2169 -4394 484 242 39 84 chr1 187337010 187337365 -55326988 + L1M4c LINE L1 2349 2687 -3695 1548 176 19 22 chr1 187337365 187337677 -55326676 - Tigger3(Golem) DNA MER2_type 0 3029 2719 568 271 102 7 chr1 187337678 187337973 -55326380 + L1M4c LINE L1 3975 4297 -2085 2032 120 0 14 chr1 187337998 187338289 -55326064 + AluSx SINE Alu 8 294 -18 1976 233 12 10 chr1 187338596 187339008 -55325345 - MER74C LTR ERVL -47 413 1 2270 74 0 0 chr1 187339085 187339392 -55324961 - AluY SINE Alu 0 308 2 1462 252 99 53 chr1 187340187 187341271 -55323082 - Charlie2b DNA MER1_type -75 2707 1574 710 348 130 14 chr1 187341312 187341735 -55322618 + L2 LINE L2 2453 2924 -390 334 264 61 67 chr1 187341794 187342303 -55322050 - L1MEc LINE L1 -4886 1346 925 316 234 28 85 chr1 187342306 187342447 -55321906 - L1MEc LINE L1 -5252 867 735 2262 88 0 0 chr1 187342521 187342815 -55321538 + AluY SINE Alu 2 295 -16 21 0 0 0 chr1 187343272 187343293 -55321060 + AT_rich Low_complexity Low_complexity 1 21 0 2221 83 0 10 chr1 187343300 187343589 -55320764 - AluY SINE Alu -25 286 1 40841 65 7 1 chr1 187343610 187349691 -55314662 + L1PA5 LINE L1 26 6141 -13 199 19 56 74 chr1 187350759 187350813 -55313540 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 25 51 0 0 chr1 187350816 187350855 -55313498 + AT_rich Low_complexity Low_complexity 1 39 0 28 0 0 0 chr1 187351012 187351040 -55313313 + AT_rich Low_complexity Low_complexity 1 28 0 270 335 81 25 chr1 187352038 187352235 -55312118 - LTR67 LTR ERVL -2 555 348 435 304 19 0 chr1 187352405 187352563 -55311790 + CT-rich Low_complexity Low_complexity 2 162 0 514 144 15 30 chr1 187352856 187352988 -55311365 + GA-rich Low_complexity Low_complexity 4 133 0 2485 108 6 0 chr1 187353384 187353735 -55310618 - L1PB1 LINE L1 -5 6862 6510 16860 174 29 16 chr1 187353736 187356640 -55307713 - L1PB1 LINE L1 -670 6197 3331 2287 108 0 13 chr1 187356640 187356955 -55307398 - AluY SINE Alu 0 311 1 16860 174 29 16 chr1 187356955 187360167 -55304186 - L1PB1 LINE L1 -3536 3331 1 704 237 31 36 chr1 187360172 187360396 -55303957 - MER58A DNA MER1_type -1 223 1 1487 201 0 4 chr1 187360928 187361201 -55303152 + AluJb SINE Alu 2 273 -39 801 232 0 0 chr1 187362052 187362216 -55302137 - FRAM SINE Alu -3 173 10 586 252 43 0 chr1 187362347 187362486 -55301867 - MLT1J1 LTR MaLR -296 150 6 191 333 15 0 chr1 187364578 187364644 -55299709 + L3 LINE CR1 1509 1575 -2 2305 103 0 0 chr1 187364687 187364999 -55299354 - AluSx SINE Alu 0 312 1 519 126 0 35 chr1 187365030 187365117 -55299236 + HY4 scRNA scRNA 10 93 0 493 316 11 34 chr1 187365412 187365589 -55298764 + MIR SINE MIR 20 192 -70 852 264 24 31 chr1 187365663 187365951 -55298402 - MLT1I LTR MaLR -62 347 62 198 321 302 6 chr1 187365973 187366132 -55298221 + L2 LINE L2 2877 3082 -190 1841 159 23 28 chr1 187366350 187366703 -55297650 - MSTB1 LTR MaLR 0 432 82 396 0 0 0 chr1 187366967 187367011 -55297342 + (CA)n Simple_repeat Simple_repeat 2 45 0 401 312 35 52 chr1 187367600 187367831 -55296522 + MIR SINE MIR 36 262 0 300 285 161 71 chr1 187368053 187368463 -55295890 - MLT1H LTR MaLR -72 477 31 560 288 71 6 chr1 187368581 187368751 -55295602 + MIR SINE MIR 80 260 -2 234 247 49 12 chr1 187369365 187369446 -55294907 - L1M4 LINE L1 -1196 4950 4867 2458 36 0 16 chr1 187369446 187369750 -55294603 - AluY SINE Alu -12 299 1 1950 284 72 53 chr1 187369779 187371207 -55293146 - L1M4 LINE L1 -1364 4782 3328 364 346 65 32 chr1 187371218 187371375 -55292978 - L1MEd LINE L1 -4810 1500 1350 356 127 70 0 chr1 187371375 187371446 -55292907 - L1MA3 LINE L1 0 6305 6230 364 346 65 32 chr1 187371446 187371805 -55292548 - L1MEd LINE L1 -4960 1350 930 24 32 0 0 chr1 187371921 187371952 -55292401 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chr1 187372892 187372935 -55291418 + AT_rich Low_complexity Low_complexity 1 43 0 416 313 168 59 chr1 187372947 187373680 -55290673 + L3 LINE CR1 672 1554 -23 2487 50 3 0 chr1 187373696 187373997 -55290356 - AluY SINE Alu -9 302 1 22 35 0 0 chr1 187374120 187374149 -55290204 + AT_rich Low_complexity Low_complexity 1 29 0 264 242 0 15 chr1 187374317 187374383 -55289970 - MLT1C LTR MaLR 0 467 403 869 154 86 96 chr1 187374384 187374604 -55289749 + AluSq SINE Alu 38 255 -58 1006 236 82 62 chr1 187374625 187375028 -55289325 - MLT1C LTR MaLR -51 416 6 21 0 0 0 chr1 187375256 187375277 -55289076 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 187375684 187375715 -55288638 + AT_rich Low_complexity Low_complexity 1 31 0 2582 39 3 0 chr1 187376305 187376612 -55287741 + AluY SINE Alu 1 308 -3 857 116 14 0 chr1 187377334 187377472 -55286881 - L1MA7 LINE L1 -12 6279 6140 21 57 0 0 chr1 187377573 187377608 -55286745 + AT_rich Low_complexity Low_complexity 1 35 0 751 232 0 30 chr1 187379889 187380057 -55284296 + MER82 DNA MER2_type 202 364 -289 300 50 0 0 chr1 187380038 187380078 -55284275 - THE1C LTR MaLR -41 334 295 * 519 277 89 65 chr1 187380105 187380441 -55283912 + MER82 DNA MER2_type 281 624 -29 2091 270 78 34 chr1 187380737 187382488 -55281865 - L1ME1 LINE L1 -3 6163 4341 297 192 50 0 chr1 187382576 187382696 -55281657 + (TA)n Simple_repeat Simple_repeat 1 126 0 225 0 0 0 chr1 187382705 187382730 -55281623 + (TG)n Simple_repeat Simple_repeat 2 26 0 865 316 81 12 chr1 187382730 187383744 -55280609 - L1ME1 LINE L1 -1837 4309 3216 1588 241 48 54 chr1 187383745 187384380 -55279973 - MLT1E2 LTR MaLR -2 624 1 866 276 92 12 chr1 187384492 187385069 -55279284 - L1ME1 LINE L1 -2992 3154 2520 330 45 0 0 chr1 187385234 187385278 -55279075 + (TG)n Simple_repeat Simple_repeat 2 45 0 226 275 92 8 chr1 187386305 187386436 -55277917 - HAL1 LINE L1 -815 1692 1551 622 279 128 10 chr1 187386817 187387208 -55277145 - L1M4 LINE L1 -3041 3105 2669 335 357 104 42 chr1 187387896 187388566 -55275787 + L2 LINE L2 1990 2701 -613 21 57 0 0 chr1 187388964 187388999 -55275354 + AT_rich Low_complexity Low_complexity 1 35 0 552 323 108 40 chr1 187389216 187389518 -55274835 - L2 LINE L2 -55 3258 2978 841 146 49 27 chr1 187389518 187389703 -55274650 - MER53 DNA DNA 0 189 1 552 323 108 40 chr1 187389703 187389958 -55274395 - L2 LINE L2 -335 2978 2667 1335 219 19 110 chr1 187390341 187390770 -55273583 - MLT1C LTR MaLR 0 390 1 190 344 97 0 chr1 187390898 187390991 -55273362 - MIR SINE MIR -44 218 117 37 52 0 0 chr1 187391192 187391250 -55273103 + AT_rich Low_complexity Low_complexity 1 58 0 24 32 0 0 chr1 187391994 187392025 -55272328 + AT_rich Low_complexity Low_complexity 1 31 0 7173 225 60 28 chr1 187393289 187395182 -55269171 - L1MC3 LINE L1 -670 7115 5088 22 0 0 0 chr1 187395182 187395204 -55269149 + AT_rich Low_complexity Low_complexity 1 22 0 7173 225 60 28 chr1 187395204 187396090 -55268263 - L1MC3 LINE L1 -2697 5088 4232 2243 136 8 35 chr1 187396188 187396562 -55267791 - THE1B LTR MaLR 0 364 1 11008 108 13 0 chr1 187396562 187398122 -55266231 - THE1B-int LTR MaLR 0 1580 1 2150 150 14 19 chr1 187398122 187398488 -55265865 - THE1B LTR MaLR 0 364 1 850 275 55 18 chr1 187398532 187398929 -55265424 + L1M4 LINE L1 3375 3786 -2360 10161 244 48 36 chr1 187399902 187400083 -55264270 - L1MA10 LINE L1 -65 6473 6296 2369 205 71 46 chr1 187400083 187400799 -55263554 + MER50 LTR ERV1 1 734 0 10161 244 48 36 chr1 187400799 187402866 -55261487 - L1MA10 LINE L1 -242 6296 4255 1897 140 3 7 chr1 187402866 187403166 -55261187 - AluSc SINE Alu -7 302 4 10161 244 48 36 chr1 187403166 187404272 -55260081 - L1MA10 LINE L1 -2283 4255 3164 3032 155 20 0 chr1 187404272 187404775 -55259578 - MER75 DNA T2_type 0 514 2 10161 244 48 36 chr1 187404775 187407046 -55257307 - L1MA10 LINE L1 -3374 3164 1030 677 358 48 28 chr1 187407106 187407539 -55256814 - L1MA10 LINE L1 -5686 595 154 227 266 0 0 chr1 187408167 187408231 -55256122 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 193 289 0 40 chr1 187408747 187408823 -55255530 + MIR SINE MIR 130 202 -60 264 200 0 0 chr1 187409761 187409821 -55254532 + (TG)n Simple_repeat Simple_repeat 2 61 0 199 353 112 9 chr1 187409826 187409942 -55254411 + L2 LINE L2 2712 2839 -475 3919 107 4 0 chr1 187411041 187411593 -55252760 - MER41A LTR ERV1 0 554 1 1942 123 171 20 chr1 187411810 187412160 -55252193 - MER4A LTR ERV1 0 664 262 521 143 0 67 chr1 187412161 187412182 -55252171 - MER4A LTR ERV1 -566 98 77 4969 78 5 12 chr1 187412182 187412846 -55251507 + PABL_A LTR ERV1 1 659 -1 521 143 0 67 chr1 187412846 187412929 -55251424 - MER4A LTR ERV1 -587 77 1 4496 138 20 38 chr1 187413262 187414055 -55250298 - MER4E LTR ERV1 0 779 1 309 219 49 24 chr1 187414114 187414196 -55250157 + MER105 DNA DNA 63 146 -58 347 327 187 0 chr1 187414265 187414415 -55249938 + MER5A DNA MER1_type 12 189 0 41 36 0 0 chr1 187414423 187414478 -55249875 + AT_rich Low_complexity Low_complexity 1 55 0 756 346 120 7 chr1 187415087 187415538 -55248815 - MLT1G LTR MaLR -57 533 32 195 100 0 0 chr1 187415888 187415918 -55248435 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 386 302 0 35 chr1 187415962 187416078 -55248275 + L3b LINE CR1 1254 1365 -218 37336 90 10 8 chr1 187416143 187421617 -55242736 + L1PA6 LINE L1 11 5486 -684 2538 68 0 0 chr1 187421617 187421924 -55242429 + AluY SINE Alu 1 307 -4 37336 90 10 8 chr1 187421924 187422610 -55241743 + L1PA6 LINE L1 5486 6170 0 195 42 0 0 chr1 187422676 187422700 -55241653 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3808 179 35 10 chr1 187422881 187423574 -55240779 + MER50 LTR ERV1 1 710 -24 23 54 0 0 chr1 187423661 187423698 -55240655 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 187424153 187424176 -55240177 + AT_rich Low_complexity Low_complexity 1 23 0 1338 209 95 59 chr1 187425663 187426188 -55238165 - LTR10B LTR ERV1 -3 544 1 1302 188 106 4 chr1 187426188 187426444 -55237909 + AluJo SINE Alu 31 312 0 1151 244 48 62 chr1 187426868 187427367 -55236986 + L1 LINE L1 2785 3276 -4289 3578 211 11 50 chr1 187427509 187428417 -55235936 - L1MA9 LINE L1 -14 6298 5426 3452 213 72 31 chr1 187428416 187429455 -55234898 + L1MA9 LINE L1 5737 6818 -747 * 24 91 0 0 chr1 187430567 187430633 -55233720 + AT_rich Low_complexity Low_complexity 1 66 0 183 42 0 0 chr1 187431432 187431456 -55232897 + (TG)n Simple_repeat Simple_repeat 1 24 0 405 58 0 0 chr1 187431699 187431751 -55232602 + (CA)n Simple_repeat Simple_repeat 2 53 0 270 0 0 0 chr1 187431886 187431916 -55232437 + (TG)n Simple_repeat Simple_repeat 2 31 0 2231 205 0 7 chr1 187431943 187432372 -55231981 - MLT1A2-int LTR MaLR -1290 445 20 981 227 96 37 chr1 187432391 187432744 -55231609 - MLT1A2 LTR MaLR 0 374 1 1655 44 15 0 chr1 187432836 187432862 -55231491 + AluY SINE Alu 104 128 -183 396 0 0 0 chr1 187432862 187432906 -55231447 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1655 44 15 0 chr1 187432906 187433084 -55231269 + AluY SINE Alu 128 311 0 22 35 0 0 chr1 187433631 187433660 -55230693 + AT_rich Low_complexity Low_complexity 1 29 0 290 194 48 16 chr1 187434169 187434231 -55230122 - MIR SINE MIR -64 144 81 1032 268 149 30 chr1 187434441 187434878 -55229475 + MLT1D LTR MaLR 15 503 -2 211 283 17 0 chr1 187434891 187434951 -55229402 + L3 LINE CR1 689 749 -828 230 321 176 6 chr1 187434991 187435150 -55229203 - MIR SINE MIR -3 259 74 206 276 0 66 chr1 187435201 187435277 -55229076 + L3 LINE CR1 781 851 -726 229 374 69 0 chr1 187435594 187435725 -55228628 + L3 LINE CR1 1247 1386 -191 30 27 0 0 chr1 187437010 187437047 -55227306 + AT_rich Low_complexity Low_complexity 1 37 0 48 0 0 0 chr1 187437282 187437330 -55227023 + AT_rich Low_complexity Low_complexity 1 48 0 357 265 14 7 chr1 187437858 187438005 -55226348 - Charlie2 DNA MER1_type -68 2794 2647 11630 239 25 30 chr1 187438047 187439993 -55224360 + L1PA16 LINE L1 1788 3768 -2398 2060 112 34 3 chr1 187439993 187440288 -55224065 + AluSg SINE Alu 1 304 -6 11630 239 25 30 chr1 187440288 187442017 -55222336 + L1PA16 LINE L1 3768 5503 -663 825 259 0 0 chr1 187442034 187442235 -55222118 - L1P LINE L1 -1095 5051 4851 3760 153 3 3 chr1 187442235 187442861 -55221492 + L1PA16 LINE L1 5536 6161 -5 509 245 107 38 chr1 187442926 187443471 -55220882 - Charlie2 DNA MER1_type -302 2560 1907 29 0 0 0 chr1 187443623 187443652 -55220701 + AT_rich Low_complexity Low_complexity 1 29 0 564 278 106 18 chr1 187443711 187443984 -55220369 + L1MCc LINE L1 19 315 -6108 1365 288 26 34 chr1 187444168 187444822 -55219531 - L1M4 LINE L1 -1098 5048 4400 3890 193 13 53 chr1 187444836 187445344 -55219009 - L1MB4 LINE L1 -6 6174 5733 2473 65 3 0 chr1 187445344 187445653 -55218700 + AluY SINE Alu 1 310 -1 3890 193 13 53 chr1 187445653 187446202 -55218151 - L1MB4 LINE L1 -447 5733 5164 506 250 83 34 chr1 187446424 187446628 -55217725 - Charlie2 DNA MER1_type -2369 493 280 269 273 15 0 chr1 187446628 187446694 -55217659 + MER69 DNA AcHobo 1 67 -2459 451 204 0 2 chr1 187446842 187446986 -55217367 + MER69 DNA AcHobo 2380 2522 -4 236 280 103 61 chr1 187446999 187447260 -55217093 - Charlie2 DNA MER1_type -2584 278 7 310 299 55 55 chr1 187448016 187448143 -55216210 - HAL1 LINE L1 -2261 246 120 2034 103 0 63 chr1 187450387 187450718 -55213635 + AluSg SINE Alu 1 310 0 4987 97 0 24 chr1 187451220 187451925 -55212428 + LTR12 LTR ERV1 1 688 0 278 333 0 0 chr1 187451999 187452015 -55212338 - L1MA10 LINE L1 -2 6332 6317 2004 261 68 75 chr1 187452015 187452690 -55211663 - L1ME2 LINE L1 -10 6154 5501 1612 178 3 36 chr1 187452690 187452999 -55211354 - AluJb SINE Alu -13 299 1 2004 261 68 75 chr1 187452999 187453238 -55211115 - L1ME2 LINE L1 -663 5501 5262 1404 278 95 28 chr1 187453303 187454258 -55210095 - L1ME2 LINE L1 -1062 5084 4066 195 365 77 28 chr1 187454430 187454611 -55209742 - MIR SINE MIR -25 237 48 23 0 0 0 chr1 187454973 187454996 -55209357 + AT_rich Low_complexity Low_complexity 1 23 0 238 118 73 15 chr1 187455390 187455458 -55208895 + (TA)n Simple_repeat Simple_repeat 2 73 0 313 196 65 0 chr1 187455472 187455564 -55208789 + L1M4 LINE L1 5242 5339 -807 291 237 0 105 chr1 187455722 187455836 -55208517 + L1MA10 LINE L1 6191 6292 -42 26 0 0 0 chr1 187456082 187456108 -55208245 + AT_rich Low_complexity Low_complexity 1 26 0 261 230 27 0 chr1 187456234 187456308 -55208045 + (TA)n Simple_repeat Simple_repeat 2 77 0 301 298 59 36 chr1 187456478 187456723 -55207630 - L1ME1 LINE L1 -30 6132 5890 1090 229 84 86 chr1 187456776 187457754 -55206599 - L1ME1 LINE L1 -274 5890 4898 26 0 0 0 chr1 187458447 187458473 -55205880 + AT_rich Low_complexity Low_complexity 1 26 0 250 374 66 12 chr1 187458790 187458956 -55205397 + MIR3 SINE MIR 31 205 -3 27 49 0 0 chr1 187460019 187460060 -55204293 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr1 187460185 187460211 -55204142 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr1 187460580 187460608 -55203745 + AT_rich Low_complexity Low_complexity 1 28 0 2121 119 3 3 chr1 187460739 187461049 -55203304 - AluSg SINE Alu 0 310 1 24 0 0 0 chr1 187462326 187462350 -55202003 + AT_rich Low_complexity Low_complexity 1 24 0 360 352 34 13 chr1 187462581 187462965 -55201388 - L1ME LINE L1 -403 5759 5368 23 0 0 0 chr1 187463292 187463315 -55201038 + AT_rich Low_complexity Low_complexity 1 23 0 1769 120 6 79 chr1 187463445 187463762 -55200591 + AluSc SINE Alu 1 294 -15 34 0 0 0 chr1 187463937 187463971 -55200382 + AT_rich Low_complexity Low_complexity 1 34 0 252 281 0 0 chr1 187465148 187465212 -55199141 + (TA)n Simple_repeat Simple_repeat 2 65 0 189 0 0 0 chr1 187465707 187465728 -55198625 + (A)n Simple_repeat Simple_repeat 1 21 0 216 0 0 0 chr1 187466462 187466486 -55197867 + (T)n Simple_repeat Simple_repeat 1 24 0 1759 123 80 37 chr1 187466838 187467187 -55197166 + THE1B LTR MaLR 1 364 0 24 67 0 0 chr1 187467643 187467688 -55196665 + AT_rich Low_complexity Low_complexity 1 45 0 998 130 0 0 chr1 187467807 187467976 -55196377 - L1MA5A LINE L1 -1 6296 6128 296 311 24 54 chr1 187468058 187468225 -55196128 + L2 LINE L2 3136 3297 -16 30 0 0 0 chr1 187468803 187468833 -55195520 + AT_rich Low_complexity Low_complexity 1 30 0 492 252 56 79 chr1 187470741 187470955 -55193398 + MER3 DNA MER1_type 1 209 0 2469 62 3 0 chr1 187471104 187471412 -55192941 + AluY SINE Alu 1 309 -2 7418 32 6 22 chr1 187473020 187474306 -55190047 - L1PA4 LINE L1 -3 6152 4875 256 211 8 68 chr1 187475130 187475263 -55189090 + T-rich Low_complexity Low_complexity 5 129 0 26 50 0 0 chr1 187475375 187475415 -55188938 + AT_rich Low_complexity Low_complexity 1 40 0 276 297 27 0 chr1 187475493 187475604 -55188749 + (TA)n Simple_repeat Simple_repeat 1 114 0 2155 108 0 7 chr1 187475686 187475983 -55188370 + AluY SINE Alu 1 295 -16 375 281 45 35 chr1 187477682 187477880 -55186473 + MERVL LTR ERVL 4420 4578 -907 287 360 124 13 chr1 187478184 187478409 -55185944 - MIR SINE MIR -10 252 3 259 349 61 15 chr1 187478576 187478708 -55185645 + LTR67 LTR ERVL 36 173 -384 36 87 0 0 chr1 187478725 187478817 -55185536 + AT_rich Low_complexity Low_complexity 1 92 0 23 68 0 0 chr1 187479184 187479228 -55185125 + AT_rich Low_complexity Low_complexity 1 44 0 885 82 0 7 chr1 187479228 187479363 -55184990 + AluY SINE Alu 176 309 -2 568 339 77 11 chr1 187480591 187480957 -55183396 - L1ME3A LINE L1 -223 5947 5558 299 281 22 61 chr1 187480925 187481171 -55183182 - L1M3 LINE L1 -618 5550 5317 * 386 316 67 11 chr1 187481295 187481580 -55182773 - L1M3 LINE L1 -942 5204 4904 32 67 0 0 chr1 187482144 187482204 -55182149 + AT_rich Low_complexity Low_complexity 1 60 0 2207 160 53 19 chr1 187482629 187483042 -55181311 - MSTA LTR MaLR 0 428 2 349 351 44 36 chr1 187484266 187484491 -55179862 - MIR SINE MIR -19 243 17 346 324 113 46 chr1 187484715 187485132 -55179221 + L2 LINE L2 2860 3304 -9 306 344 148 8 chr1 187485173 187485295 -55179058 + L2 LINE L2 3134 3272 0 1637 240 67 10 chr1 187485315 187485732 -55178621 + MER70B LTR ERVL 1 441 -137 1992 127 7 23 chr1 187485882 187486189 -55178164 + AluSx SINE Alu 1 302 -10 293 308 44 69 chr1 187486311 187486470 -55177883 - MIR SINE MIR -94 168 14 24 100 0 0 chr1 187486626 187486706 -55177647 + AT_rich Low_complexity Low_complexity 1 80 0 289 230 27 0 chr1 187487762 187487827 -55176526 + MLT1A2 LTR MaLR 1 67 -298 230 303 15 0 chr1 187487827 187487893 -55176460 + MER52A LTR ERV1 1 67 -1688 2223 221 87 28 chr1 187488353 187489253 -55175100 + MER52A LTR ERV1 729 1755 0 922 235 50 78 chr1 187489253 187489572 -55174781 + MLT1A2 LTR MaLR 65 374 0 258 340 0 31 chr1 187489635 187489732 -55174621 - MIR SINE MIR -110 152 59 28 29 0 0 chr1 187490826 187490861 -55173492 + AT_rich Low_complexity Low_complexity 1 35 0 1320 370 13 11 chr1 187491362 187491970 -55172383 + L1PA13 LINE L1 1 609 -6178 4589 255 13 14 chr1 187492364 187494381 -55169972 + L1PA13 LINE L1 1363 3395 -3402 2463 153 6 2 chr1 187494381 187494882 -55169471 + L1P4 LINE L1 5158 5660 -506 186 143 0 0 chr1 187495018 187495053 -55169300 + (A)n Simple_repeat Simple_repeat 1 35 0 2140 117 0 0 chr1 187496025 187496324 -55168029 - AluY SINE Alu -12 299 1 288 88 0 18 chr1 187496350 187496407 -55167946 - L1MD3 LINE L1 -11 7984 7929 5754 246 88 81 chr1 187496413 187498755 -55165598 + L1M2 LINE L1 2 2360 -4489 647 207 5 25 chr1 187498771 187498969 -55165384 + L1M2 LINE L1 3731 3924 -2924 840 215 14 36 chr1 187498977 187499200 -55165153 - L1MD3 LINE L1 -108 7887 7670 365 307 11 45 chr1 187499224 187499400 -55164953 + L1ME1 LINE L1 5984 6153 -13 506 320 58 52 chr1 187500938 187501422 -55162931 - L1M4 LINE L1 -1478 4668 4182 28 61 0 0 chr1 187501878 187501927 -55162426 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr1 187502151 187502174 -55162179 + AT_rich Low_complexity Low_complexity 1 23 0 228 299 15 30 chr1 187502324 187502391 -55161962 + Charlie1 DNA MER1_type 3 68 -2693 440 226 98 0 chr1 187502451 187502584 -55161769 + Charlie1 DNA MER1_type 2389 2534 -227 701 220 0 0 chr1 187502655 187502787 -55161566 - FRAM SINE Alu -13 163 32 21 0 0 0 chr1 187502847 187502868 -55161485 + AT_rich Low_complexity Low_complexity 1 21 0 2364 77 0 3 chr1 187502886 187503186 -55161167 - AluY SINE Alu -12 299 1 1641 231 44 65 chr1 187503877 187504517 -55159836 + MLT1E2 LTR MaLR 1 622 -4 213 333 16 0 chr1 187504624 187504687 -55159666 - MIR SINE MIR -147 115 52 235 346 10 10 chr1 187505977 187506081 -55158272 - L2 LINE L2 -695 2619 2516 262 221 12 23 chr1 187506170 187506256 -55158097 + L1ME LINE L1 5768 5852 -269 278 304 216 26 chr1 187506315 187506509 -55157844 - MIR SINE MIR -30 232 2 2037 259 35 29 chr1 187506620 187507316 -55157037 - L1ME2 LINE L1 -32 6201 5502 1349 260 152 92 chr1 187507469 187509296 -55155057 - L1ME2 LINE L1 -795 5420 3466 2770 19 0 0 chr1 187509296 187509607 -55154746 + AluYa5 SINE Alu 1 311 0 1349 260 152 92 chr1 187509607 187509746 -55154607 - L1ME2 LINE L1 -2749 3466 3337 8806 237 40 70 chr1 187509822 187512802 -55151551 - L1M2 LINE L1 -3948 2901 11 228 247 14 14 chr1 187512814 187512887 -55151466 - L1ME2 LINE L1 -3104 3111 3039 * 1021 282 96 16 chr1 187512879 187513429 -55150924 - L1ME2 LINE L1 -4175 2221 1628 391 269 10 10 chr1 187513648 187513752 -55150601 - Tigger2a DNA MER2_type -311 123 20 201 194 60 0 chr1 187513754 187513821 -55150532 + (TA)n Simple_repeat Simple_repeat 1 71 0 22 35 0 0 chr1 187513869 187513898 -55150455 + AT_rich Low_complexity Low_complexity 1 29 0 2042 139 34 8 chr1 187513926 187514278 -55150075 + THE1B LTR MaLR 1 361 -3 24 0 0 0 chr1 187514316 187514340 -55150013 + AT_rich Low_complexity Low_complexity 1 24 0 916 160 6 13 chr1 187514505 187514661 -55149692 - AluJo SINE Alu -157 155 1 291 348 45 5 chr1 187514662 187514863 -55149490 + LTR33A LTR ERVL 315 523 0 987 222 84 59 chr1 187514872 187515228 -55149125 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr1 187515757 187515786 -55148567 + AT_rich Low_complexity Low_complexity 1 29 0 691 153 24 0 chr1 187515864 187515988 -55148365 + L1MB7 LINE L1 5888 6014 -170 405 331 30 18 chr1 187516108 187516277 -55148076 + MIR SINE MIR 92 262 0 960 194 72 90 chr1 187516663 187516872 -55147481 - MER2 DNA MER2_type 0 345 143 1463 223 14 7 chr1 187516872 187517168 -55147185 + AluJb SINE Alu 1 298 -4 960 194 72 90 chr1 187517168 187517304 -55147049 - MER2 DNA MER2_type -202 143 6 288 313 61 18 chr1 187517695 187517858 -55146495 + MLT1E1 LTR MaLR 96 265 -389 5473 102 13 5 chr1 187518256 187519049 -55145304 + L1PA10 LINE L1 5366 6164 -4 23 33 0 0 chr1 187519809 187519839 -55144514 + AT_rich Low_complexity Low_complexity 1 30 0 357 234 142 61 chr1 187520105 187520366 -55143987 - L1M4 LINE L1 -751 5395 5114 1755 166 24 0 chr1 187520654 187520943 -55143410 - AluSx SINE Alu -15 297 2 21 57 0 0 chr1 187520957 187520992 -55143361 + AT_rich Low_complexity Low_complexity 1 35 0 1295 249 3 3 chr1 187521481 187521786 -55142567 - AluJo SINE Alu -7 305 1 377 303 178 34 chr1 187521864 187522128 -55142225 + MLT1L LTR MaLR 143 444 -171 2380 77 0 0 chr1 187522155 187522453 -55141900 + AluY SINE Alu 6 303 -8 1825 244 36 17 chr1 187523081 187523605 -55140748 - L1ME2 LINE L1 -7 6157 5624 797 240 67 93 chr1 187523622 187523922 -55140431 + LTR41 LTR ERVL 3 294 -479 244 276 70 87 chr1 187525646 187525831 -55138522 - MLT1J LTR MaLR 0 511 330 23 86 0 0 chr1 187526603 187526661 -55137692 + AT_rich Low_complexity Low_complexity 1 58 0 1911 132 0 17 chr1 187527432 187527747 -55136606 + AluSx SINE Alu 1 310 0 375 319 7 21 chr1 187527985 187528126 -55136227 + MIR SINE MIR 119 257 -5 1366 235 18 6 chr1 187528186 187528518 -55135835 + L1MD1 LINE L1 15 350 -6190 2488 231 53 53 chr1 187528541 187529448 -55134905 + L1MD1 LINE L1 813 1719 -4821 3834 229 55 77 chr1 187529468 187530280 -55134073 + L1MD1 LINE L1 3838 4666 -1874 183 42 0 0 chr1 187530280 187530304 -55134049 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3834 229 55 77 chr1 187530304 187531259 -55133094 + L1MD1 LINE L1 4666 5566 -974 2011 214 67 34 chr1 187531268 187531833 -55132520 + L1MD1 LINE L1 5693 6276 -360 1325 84 0 0 chr1 187531855 187531887 -55132466 - L1PB1 LINE L1 -183 5968 5937 416 291 0 66 chr1 187531887 187532083 -55132270 - L1MB2 LINE L1 -235 5936 5754 373 20 82 0 chr1 187532096 187532145 -55132208 - L1P5 LINE L1 -361 5790 5738 1211 94 11 11 chr1 187532145 187532319 -55132034 + L1PB1 LINE L1 5972 6151 0 281 377 13 0 chr1 187532624 187532783 -55131570 + MER117 DNA MER1_type 3 163 -34 868 233 25 3 chr1 187532859 187533173 -55131180 + L1MD1 LINE L1 6273 6636 0 893 318 119 40 chr1 187533199 187533573 -55130780 - L2 LINE L2 -1291 2023 1680 1788 165 3 34 chr1 187533573 187533895 -55130458 + AluSx SINE Alu 1 312 0 234 0 0 0 chr1 187533895 187533921 -55130432 + (TA)n Simple_repeat Simple_repeat 2 27 0 893 318 119 40 chr1 187533921 187534243 -55130110 - L2 LINE L2 -1633 1681 1271 234 91 0 0 chr1 187535513 187535546 -55128807 + (T)n Simple_repeat Simple_repeat 1 33 0 6304 39 0 4 chr1 187535602 187536370 -55127983 - L1PA4 LINE L1 -1 6154 5390 1367 12 6 0 chr1 187536370 187536541 -55127812 + L1PA4 LINE L1 5232 5403 -743 541 275 157 31 chr1 187536913 187537513 -55126840 + L1MEc LINE L1 1751 2520 -4059 4036 212 27 13 chr1 187537539 187538470 -55125883 - L1MB3 LINE L1 -3 6180 5238 527 185 54 0 chr1 187538470 187538562 -55125791 + MER2 DNA MER2_type 1 97 -248 1482 268 36 27 chr1 187538569 187539017 -55125336 + L1MA4 LINE L1 28 479 -7086 593 314 68 12 chr1 187539031 187539279 -55125074 - L1M1 LINE L1 -6799 766 505 * 13183 204 32 26 chr1 187539244 187545014 -55119339 + L1MA4 LINE L1 1886 7719 0 781 199 87 15 chr1 187545036 187545242 -55119111 + MER2 DNA MER2_type 84 304 -41 1372 254 71 15 chr1 187545260 187545792 -55118561 - L1MB3 LINE L1 -909 5237 4676 909 263 64 26 chr1 187545792 187546543 -55117810 + L1MEc LINE L1 2529 3428 -2998 829 289 71 14 chr1 187546591 187546975 -55117378 + L1MEc LINE L1 3576 3977 -2449 * 6078 172 36 17 chr1 187546971 187548183 -55116170 - L1P LINE L1 -3282 2864 1630 5774 152 18 10 chr1 187548185 187550062 -55114291 + L1PA11 LINE L1 4326 6174 0 2335 282 68 44 chr1 187550075 187551226 -55113127 + L1MEc LINE L1 3980 5179 -1247 1498 108 100 19 chr1 187551226 187551495 -55112858 - L1PA11 LINE L1 -3 6171 5881 2335 282 68 44 chr1 187551495 187551877 -55112476 + L1MEc LINE L1 5179 5550 -876 2265 62 3 65 chr1 187552139 187552464 -55111889 + AluY SINE Alu 1 305 -6 40 83 0 0 chr1 187552941 187553037 -55111316 + AT_rich Low_complexity Low_complexity 1 96 0 2293 232 114 4 chr1 187553148 187553958 -55110395 - L1MB8 LINE L1 -92 6584 5641 2768 85 47 19 chr1 187553974 187554012 -55110341 - MLT2A1 LTR ERVL -8 436 401 225 0 0 0 chr1 187554012 187554037 -55110316 + (TA)n Simple_repeat Simple_repeat 2 26 0 2768 85 47 19 chr1 187554037 187554422 -55109931 - MLT2A1 LTR ERVL -43 401 1 3831 124 16 5 chr1 187554422 187555036 -55109317 - HERVL-A1 LTR ERVL 0 5654 5034 23715 92 6 5 chr1 187555137 187560618 -55103735 - HERVL-A1 LTR ERVL -82 5572 1 660 0 60 0 chr1 187560653 187560753 -55103600 + (TA)n Simple_repeat Simple_repeat 1 106 0 2550 121 69 10 chr1 187560761 187560791 -55103562 - MLT2A1 LTR ERVL -6 438 411 207 0 0 0 chr1 187560791 187560814 -55103539 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 249 119 0 0 chr1 187560813 187560855 -55103498 + (TA)n Simple_repeat Simple_repeat 1 42 0 2550 121 69 10 chr1 187560814 187561230 -55103123 - MLT2A1 LTR ERVL -33 411 9 949 259 49 18 chr1 187561250 187562463 -55101890 - L1MB8 LINE L1 -1019 5625 4289 1302 281 82 42 chr1 187562519 187563276 -55101077 - L1MB8 LINE L1 -4489 2157 1334 1958 119 11 0 chr1 187563276 187563580 -55100773 - AluSg SINE Alu 0 307 1 1302 281 82 42 chr1 187563580 187563984 -55100369 - L1MB8 LINE L1 -5312 1334 948 501 318 46 63 chr1 187564127 187564353 -55100000 - L1MB8 LINE L1 -5653 889 672 2182 125 0 6 chr1 187564353 187564664 -55099689 - AluSx SINE Alu -3 309 1 501 318 46 63 chr1 187564664 187564849 -55099504 - L1MB8 LINE L1 -5870 672 485 286 272 25 68 chr1 187564946 187565108 -55099245 - L1MB8 LINE L1 -6281 261 107 213 94 0 0 chr1 187565122 187565154 -55099199 + (T)n Simple_repeat Simple_repeat 1 32 0 6237 149 34 33 chr1 187565635 187566862 -55097491 + Tigger3b DNA MER2_type 2 1230 -1 383 313 134 42 chr1 187567114 187567427 -55096926 + MLT1J2 LTR MaLR 83 424 -26 24 77 0 0 chr1 187568298 187568350 -55096003 + AT_rich Low_complexity Low_complexity 1 52 0 32 0 0 0 chr1 187568448 187568480 -55095873 + AT_rich Low_complexity Low_complexity 1 32 0 3156 191 115 9 chr1 187568711 187569456 -55094897 + L1MA6 LINE L1 4507 5330 -816 672 197 0 8 chr1 187569458 187569585 -55094768 + FLAM_C SINE Alu 1 126 -17 1923 150 17 0 chr1 187569606 187569906 -55094447 + AluSx SINE Alu 1 305 -7 16811 175 127 29 chr1 187570017 187574856 -55089497 - L1PA8A LINE L1 -677 5769 368 1812 189 71 5 chr1 187574956 187575364 -55088989 + L1MA6 LINE L1 5857 6291 -9 22 80 0 0 chr1 187575524 187575574 -55088779 + AT_rich Low_complexity Low_complexity 1 50 0 229 202 48 19 chr1 187575962 187576066 -55088287 + (TA)n Simple_repeat Simple_repeat 2 108 0 216 236 29 29 chr1 187576130 187576270 -55088083 + (TATAA)n Simple_repeat Simple_repeat 2 141 0 834 149 0 0 chr1 187576273 187576394 -55087959 - AluSq/x SINE Alu -192 121 1 185 62 0 31 chr1 187577932 187577964 -55086389 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2098 155 11 22 chr1 187578247 187578615 -55085738 + THE1B LTR MaLR 1 364 0 4346 100 20 48 chr1 187578615 187579056 -55085297 + THE1B-int LTR MaLR 1 416 -1164 1709 139 0 4 chr1 187579056 187579314 -55085039 - AluY SINE Alu -10 301 45 4346 100 20 48 chr1 187579314 187579574 -55084779 + THE1B-int LTR MaLR 416 682 -898 1190 100 0 0 chr1 187579568 187579738 -55084615 - L1MA5A LINE L1 -87 6210 6041 * 342 266 14 7 chr1 187579736 187579875 -55084478 - L1M4 LINE L1 -849 5297 5158 * 781 193 47 0 chr1 187580120 187580291 -55084062 - MER95 LTR ERV 0 431 253 582 254 27 107 chr1 187580369 187580504 -55083849 + MER63A DNA MER1_type 4 116 -1572 1303 284 72 14 chr1 187580504 187580993 -55083360 - LTR40a LTR ERVL -2 517 1 582 254 27 107 chr1 187580993 187581081 -55083272 + MER63A DNA MER1_type 116 209 -1 22 56 0 0 chr1 187581155 187581191 -55083162 + AT_rich Low_complexity Low_complexity 1 36 0 637 274 31 13 chr1 187582127 187582353 -55082000 - L1MCb LINE L1 -5247 798 569 760 302 96 39 chr1 187582455 187582975 -55081378 - L1MCb LINE L1 -5493 552 3 38 81 0 0 chr1 187583319 187583406 -55080947 + AT_rich Low_complexity Low_complexity 1 87 0 382 185 84 34 chr1 187583798 187583917 -55080436 + MLT1I LTR MaLR 267 391 -18 21 36 0 0 chr1 187584271 187584299 -55080054 + AT_rich Low_complexity Low_complexity 1 28 0 278 325 9 0 chr1 187584805 187584919 -55079434 + CT-rich Low_complexity Low_complexity 2 116 0 4801 91 15 0 chr1 187585547 187586197 -55078156 + PABL_A LTR ERV1 1 660 0 261 279 180 0 chr1 187587441 187587563 -55076790 + L1MC4 LINE L1 7588 7731 -311 26 74 0 0 chr1 187587585 187587639 -55076714 + AT_rich Low_complexity Low_complexity 1 54 0 25 31 0 0 chr1 187587661 187587693 -55076660 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1 187588690 187588712 -55075641 + AT_rich Low_complexity Low_complexity 1 22 0 356 40 20 0 chr1 187588974 187589024 -55075329 + (TG)n Simple_repeat Simple_repeat 1 51 0 1352 198 70 0 chr1 187589037 187589380 -55074973 - MLT2B1 LTR ERVL -65 450 42 884 152 146 11 chr1 187589380 187589558 -55074795 + MSTA LTR MaLR 1 202 -226 1207 189 0 5 chr1 187589562 187589774 -55074579 + AluJb SINE Alu 87 297 -15 791 186 122 50 chr1 187589775 187589996 -55074357 + MSTA LTR MaLR 192 428 0 8151 156 24 58 chr1 187590000 187591632 -55072721 + MSTA-int LTR MaLR 5 1580 0 1719 166 127 18 chr1 187591633 187592018 -55072335 + MSTA LTR MaLR 2 428 0 242 200 0 0 chr1 187592019 187592064 -55072289 - MLT2B1 LTR ERVL -470 45 1 2691 130 24 80 chr1 187592783 187593321 -55071032 - L1PA13 LINE L1 -13 6150 5643 6259 193 15 3 chr1 187593421 187594809 -55069544 + L1P4 LINE L1 4062 5467 -701 2233 114 3 0 chr1 187596103 187596410 -55067943 + AluSx SINE Alu 1 308 -4 1525 199 3 14 chr1 187597307 187597599 -55066754 - AluJo SINE Alu -21 291 3 2732 3 26 0 chr1 187598580 187598889 -55065464 + AluYb8 SINE Alu 1 317 -1 7425 219 39 20 chr1 187599136 187599716 -55064637 - L1 LINE L1 -1975 5590 5022 2196 58 0 48 chr1 187599716 187600052 -55064301 - AluY SINE Alu 0 322 1 7425 219 39 20 chr1 187600052 187602398 -55061955 - L1 LINE L1 -2543 5022 2607 2878 159 37 12 chr1 187602400 187603138 -55061215 - MER4-int LTR ERV1 -1738 4860 3857 453 333 14 7 chr1 187603145 187603283 -55061070 - MIR SINE MIR -122 140 2 6957 151 35 42 chr1 187603311 187606011 -55058342 - MER4A-int LTR ERV1 -2524 4074 198 1956 178 120 61 chr1 187606058 187607500 -55056853 - pTR5 LTR ERV1 -143 2295 276 180 0 0 0 chr1 187607542 187607562 -55056791 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2435 99 112 40 chr1 187607662 187608165 -55056188 - MER4A-int LTR ERV1 -6009 589 1 3881 120 27 0 chr1 187608168 187608752 -55055601 - MER4A LTR ERV1 0 600 1 285 345 48 36 chr1 187609974 187610142 -55054211 - MIR SINE MIR -82 180 11 22 0 0 0 chr1 187610780 187610802 -55053551 + AT_rich Low_complexity Low_complexity 1 22 0 247 226 19 0 chr1 187610862 187610915 -55053438 + (TATG)n Simple_repeat Simple_repeat 3 56 0 241 366 0 0 chr1 187612092 187612215 -55052138 + (TGG)n Simple_repeat Simple_repeat 1 123 0 1440 189 19 4 chr1 187613048 187613344 -55051009 - AluJb SINE Alu 0 308 9 230 254 0 15 chr1 187613622 187613689 -55050664 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 258 239 15 0 chr1 187613965 187614032 -55050321 + LTR41 LTR ERVL 697 764 -9 1251 256 0 25 chr1 187614437 187614761 -55049592 - L1 LINE L1 -915 5231 4916 1853 222 21 54 chr1 187614762 187615333 -55049020 + L1 LINE L1 4355 4906 -1240 36 0 0 0 chr1 187617283 187617319 -55047034 + AT_rich Low_complexity Low_complexity 1 36 0 224 271 0 0 chr1 187618750 187618798 -55045555 - MIR SINE MIR -114 148 101 28 48 0 0 chr1 187619277 187619319 -55045034 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr1 187619619 187619655 -55044698 + AT_rich Low_complexity Low_complexity 1 36 0 854 181 7 0 chr1 187619667 187619816 -55044537 - FRAM SINE Alu -26 150 1 21 36 0 0 chr1 187619824 187619852 -55044501 + AT_rich Low_complexity Low_complexity 1 28 0 367 244 35 9 chr1 187619874 187619989 -55044364 - AluSq/x SINE Alu -184 119 2 2132 157 14 3 chr1 187620123 187620480 -55043873 - L1P3 LINE L1 -5512 363 3 278 297 90 43 chr1 187620737 187621037 -55043316 - L1MEd LINE L1 -5238 881 568 23 0 0 0 chr1 187621238 187621261 -55043092 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 187622424 187622452 -55041901 + AT_rich Low_complexity Low_complexity 1 28 0 360 158 0 6 chr1 187623233 187623295 -55041058 + L1PB4 LINE L1 6033 6091 -60 394 337 66 25 chr1 187623980 187624176 -55040177 - L2 LINE L2 -1925 1389 1186 201 177 40 8 chr1 187624277 187624401 -55039952 + (TA)n Simple_repeat Simple_repeat 2 129 0 216 338 20 68 chr1 187624964 187625112 -55039241 + MIR3 SINE MIR 52 192 -16 356 273 23 0 chr1 187625238 187625326 -55039027 + MER5C DNA MER1_type 5 94 -230 23 0 0 0 chr1 187625655 187625678 -55038675 + AT_rich Low_complexity Low_complexity 1 23 0 2056 123 0 7 chr1 187626252 187626545 -55037808 - AluSx SINE Alu -15 297 7 219 189 38 0 chr1 187627260 187627313 -55037040 + (AATAG)n Simple_repeat Simple_repeat 4 58 0 259 257 182 19 chr1 187628064 187628278 -55036075 - L1ME4a LINE L1 -7 6114 5866 1160 246 81 32 chr1 187629545 187629988 -55034365 + MLT1C LTR MaLR 1 465 -2 459 0 0 0 chr1 187630513 187630564 -55033789 + (CA)n Simple_repeat Simple_repeat 2 52 0 228 175 16 48 chr1 187630565 187630628 -55033725 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 2181 95 7 7 chr1 187631053 187631348 -55033005 - AluY SINE Alu -16 295 1 247 293 147 67 chr1 187631634 187631784 -55032569 + MIR SINE MIR 23 184 -78 1929 136 50 19 chr1 187631787 187632147 -55032206 - THE1C LTR MaLR 0 375 5 1631 141 36 0 chr1 187632371 187632620 -55031733 - AluSx SINE Alu -52 260 3 298 368 0 13 chr1 187632732 187632887 -55031466 + Charlie2 DNA MER1_type 178 330 -2452 613 281 142 14 chr1 187632887 187633702 -55030651 + Charlie2 DNA MER1_type 1851 2770 -92 636 181 23 23 chr1 187634072 187634227 -55030126 - FLAM_C SINE Alu 0 155 1 2400 185 33 12 chr1 187635077 187635563 -55028790 - L1MC1 LINE L1 -1 6332 5837 8421 170 116 55 chr1 187635612 187637760 -55026593 - L1MCa LINE L1 -4130 2296 18 240 122 0 0 chr1 187638644 187638685 -55025668 + (T)n Simple_repeat Simple_repeat 1 41 0 374 264 129 7 chr1 187638976 187639131 -55025222 + MER3 DNA MER1_type 3 129 -80 28 0 0 0 chr1 187639227 187639255 -55025098 + AT_rich Low_complexity Low_complexity 1 28 0 2805 7 0 0 chr1 187639611 187639920 -55024433 - AluYb8 SINE Alu -9 309 1 21 0 0 0 chr1 187640107 187640128 -55024225 + AT_rich Low_complexity Low_complexity 1 21 0 12333 241 33 16 chr1 187640263 187645528 -55018825 - L1PA16 LINE L1 -9 7595 2210 1863 67 7 78 chr1 187645529 187645857 -55018496 - AluY SINE Alu 0 325 18 383 293 0 0 chr1 187646111 187646210 -55018143 - L1PA16 LINE L1 -5399 2182 2084 1207 325 47 23 chr1 187646354 187646924 -55017429 - L1PA16 LINE L1 -6203 1371 788 697 211 0 0 chr1 187648540 187648663 -55015690 + FLAM_A SINE Alu 5 127 -6 508 173 33 13 chr1 187648666 187648732 -55015621 + GA-rich Low_complexity Low_complexity 1 64 -89 2364 93 0 3 chr1 187648732 187649042 -55015311 + AluY SINE Alu 1 309 -2 508 173 33 13 chr1 187649042 187649125 -55015228 + GA-rich Low_complexity Low_complexity 64 153 0 1619 161 45 42 chr1 187649387 187649717 -55014636 + THE1B LTR MaLR 34 364 0 354 285 118 120 chr1 187650479 187650987 -55013366 - L3 LINE CR1 -1 1576 1070 207 70 0 70 chr1 187651924 187651967 -55012386 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 300 261 57 0 chr1 187652611 187652699 -55011654 + L1MC4 LINE L1 6611 6703 -1339 225 0 0 0 chr1 187652699 187652724 -55011629 + (TA)n Simple_repeat Simple_repeat 1 25 0 362 183 0 0 chr1 187652834 187652905 -55011448 - L1 LINE L1 -1940 4206 4136 1513 151 0 0 chr1 187652905 187653130 -55011223 - AluSx SINE Alu -87 225 1 953 148 0 0 chr1 187653130 187653265 -55011088 - AluSq/x SINE Alu -178 135 1 541 360 139 29 chr1 187653307 187654475 -55009878 + L2 LINE L2 1556 2851 -463 28 48 0 0 chr1 187656070 187656112 -55008241 + AT_rich Low_complexity Low_complexity 1 42 0 219 229 0 0 chr1 187656149 187656210 -55008143 + (TA)n Simple_repeat Simple_repeat 2 62 0 375 336 91 29 chr1 187656365 187656573 -55007780 - MIR SINE MIR -39 223 3 4320 134 53 64 chr1 187656595 187657487 -55006866 - L1PA16 LINE L1 -1 6165 5284 2528 220 30 2 chr1 187657488 187658084 -55006269 + L1PA16 LINE L1 4678 5290 -856 3917 129 24 3 chr1 187658111 187658733 -55005620 - MER41B LTR ERV1 0 635 1 308 204 66 45 chr1 187660296 187660391 -55003962 + MLT1J LTR MaLR 64 129 -321 611 303 76 4 chr1 187660661 187660899 -55003454 + HAL1b LINE L1 255 509 -839 928 244 113 0 chr1 187661215 187661498 -55002855 + Looper DNA T2_type 556 870 -688 4493 226 25 16 chr1 187661625 187663204 -55001149 + L1PA15 LINE L1 1288 2901 -3896 9316 222 78 7 chr1 187663313 187665804 -54998549 + L1PA15 LINE L1 3290 5957 -840 5150 196 33 27 chr1 187665851 187667231 -54997122 + L1PA15 LINE L1 5949 6816 0 799 202 21 5 chr1 187667255 187667443 -54996910 + L1MD3 LINE L1 7796 7986 -9 22 35 0 0 chr1 187667957 187667986 -54996367 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 187668966 187668989 -54995364 + AT_rich Low_complexity Low_complexity 1 23 0 35 88 0 0 chr1 187670156 187670247 -54994106 + AT_rich Low_complexity Low_complexity 1 91 0 3198 231 82 13 chr1 187670657 187670925 -54993428 - L1MC3 LINE L1 -11 7774 7526 180 0 0 0 chr1 187670925 187670945 -54993408 + (TA)n Simple_repeat Simple_repeat 1 20 0 3198 231 82 13 chr1 187670945 187671582 -54992771 - L1MC3 LINE L1 -259 7526 6807 3702 236 59 72 chr1 187671598 187671888 -54992465 - L1M4 LINE L1 -1755 4391 4099 1148 219 114 23 chr1 187671888 187672231 -54992122 - MLT1A2 LTR MaLR 0 374 1 3702 236 59 72 chr1 187672231 187672563 -54991790 - L1M4 LINE L1 -2047 4099 3764 780 179 0 6 chr1 187672563 187672719 -54991634 - L1MB2 LINE L1 -11 6160 6006 3702 236 59 72 chr1 187672719 187672794 -54991559 - L1M4 LINE L1 -2382 3764 3690 2495 11 0 0 chr1 187672794 187673072 -54991281 - AluYa5 SINE Alu -4 307 30 3702 236 59 72 chr1 187673072 187674007 -54990346 - L1M4 LINE L1 -2456 3690 2781 1636 233 49 46 chr1 187674007 187674641 -54989712 - MER92B LTR ERV1 0 636 1 3702 236 59 72 chr1 187674641 187674831 -54989522 - L1M4 LINE L1 -3365 2781 2590 50 15 0 15 chr1 187675359 187675408 -54988945 + AT_rich Low_complexity Low_complexity 1 50 -17 396 30 30 30 chr1 187675408 187675475 -54988878 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 50 15 0 15 chr1 187675475 187675493 -54988860 + AT_rich Low_complexity Low_complexity 50 67 0 777 202 50 112 chr1 187675559 187675935 -54988418 - L1MCa LINE L1 -4761 1803 1451 908 318 28 36 chr1 187675941 187676410 -54987943 - L1MCa LINE L1 -5575 470 6 978 321 61 45 chr1 187676551 187677090 -54987263 - MER77 LTR ERV1 -4 601 54 684 256 37 28 chr1 187677648 187677863 -54986490 - MLT2B1 LTR ERVL 0 520 304 2534 211 74 3 chr1 187677864 187678887 -54985466 - L1PB4 LINE L1 -301 5855 4767 3991 173 32 0 chr1 187678898 187679644 -54984709 + L1PA16 LINE L1 5397 6166 0 347 306 90 40 chr1 187679649 187679871 -54984482 + L1M4 LINE L1 3092 3324 -2822 939 260 35 37 chr1 187680151 187680546 -54983807 - MER66A LTR ERV1 -40 438 97 56 39 0 0 chr1 187680757 187680834 -54983519 + AT_rich Low_complexity Low_complexity 1 77 0 420 342 15 11 chr1 187680915 187681187 -54983166 + L1M4 LINE L1 4074 4346 -1800 23 0 0 0 chr1 187681560 187681583 -54982770 + AT_rich Low_complexity Low_complexity 1 23 0 257 309 57 24 chr1 187682046 187682169 -54982184 - MIR SINE MIR -44 218 92 269 307 13 0 chr1 187682171 187682246 -54982107 - L2 LINE L2 -7 3265 3190 214 317 138 16 chr1 187682520 187682643 -54981710 + MIR SINE MIR 41 178 -84 30 45 0 0 chr1 187684042 187684086 -54980267 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr1 187685173 187685210 -54979143 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr1 187686591 187686623 -54977730 + AT_rich Low_complexity Low_complexity 1 32 0 270 299 159 86 chr1 187686935 187687481 -54976872 - L2 LINE L2 -74 3239 2667 14542 164 24 18 chr1 187687499 187688686 -54975667 + Tigger2 DNA MER2_type 2 1180 -1538 183 42 0 0 chr1 187688686 187688710 -54975643 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 14542 164 24 18 chr1 187688710 187690222 -54974131 + Tigger2 DNA MER2_type 1180 2718 0 428 339 69 36 chr1 187690226 187690503 -54973850 - L2 LINE L2 -898 2416 2131 23 0 0 0 chr1 187690946 187690969 -54973384 + AT_rich Low_complexity Low_complexity 1 23 0 334 285 11 50 chr1 187691076 187691255 -54973098 + L1MEd LINE L1 1155 1326 -5046 1382 140 45 0 chr1 187691321 187691564 -54972789 - L1MA6 LINE L1 0 6300 6047 3855 134 17 3 chr1 187691567 187692210 -54972143 - L1MA6 LINE L1 -377 5923 5272 1749 214 41 55 chr1 187692210 187692669 -54971684 + MER67D LTR ERV1 49 501 -13 254 303 49 14 chr1 187692695 187692837 -54971516 + L1MEd LINE L1 1248 1394 -4990 27 0 0 0 chr1 187692837 187692864 -54971489 + AT_rich Low_complexity Low_complexity 1 27 0 2074 127 0 0 chr1 187692869 187693161 -54971192 + AluSq SINE Alu 1 292 -21 231 119 0 0 chr1 187693184 187693226 -54971127 - LTR66 LTR ERVL -171 439 398 472 330 46 10 chr1 187694979 187695176 -54969177 + MER63A DNA MER1_type 2 205 -5 242 223 36 14 chr1 187695226 187695365 -54968988 + (TA)n Simple_repeat Simple_repeat 1 142 0 22 0 0 0 chr1 187695792 187695814 -54968539 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr1 187696140 187696179 -54968174 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr1 187697844 187697876 -54966477 + AT_rich Low_complexity Low_complexity 1 32 0 524 331 179 12 chr1 187698846 187699354 -54964999 + L2 LINE L2 1713 2305 -1009 29 47 0 0 chr1 187699354 187699397 -54964956 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr1 187699520 187699550 -54964803 + AT_rich Low_complexity Low_complexity 1 30 0 2196 96 7 0 chr1 187699659 187699950 -54964403 + AluSp SINE Alu 1 293 -20 5648 138 58 25 chr1 187899958 187901054 -54763299 - MER52C LTR ERV1 -3 1275 143 21 57 0 0 chr1 187901422 187901457 -54762896 + AT_rich Low_complexity Low_complexity 1 35 0 355 295 176 36 chr1 187901901 187902179 -54762174 - L2 LINE L2 -1591 1723 1407 399 259 35 70 chr1 187902242 187902501 -54761852 - L1M4 LINE L1 -2129 4017 3768 14822 94 21 9 chr1 187902603 187904641 -54759712 - HERVL-A2 LTR ERVL -604 5050 2989 1598 106 4 4 chr1 187904635 187904862 -54759491 - HERVL-A2 LTR ERVL -5427 227 1 * 1680 169 105 29 chr1 187904862 187905386 -54758967 - MLT2A2 LTR ERVL 0 554 1 398 314 75 24 chr1 187906129 187906381 -54757972 - L1M4 LINE L1 -3274 2872 2608 1259 173 26 65 chr1 187906381 187906688 -54757665 - AluJb SINE Alu -17 295 1 396 217 81 12 chr1 187907038 187907199 -54757154 - MER53 DNA DNA -11 178 7 296 335 127 17 chr1 187907235 187907247 -54757106 + L2 LINE L2 2722 2731 -582 1802 190 0 3 chr1 187907247 187907558 -54756795 - AluSx SINE Alu 0 312 3 296 335 127 17 chr1 187907558 187907903 -54756450 + L2 LINE L2 2731 3168 -145 231 263 51 76 chr1 187907993 187908111 -54756242 + L2 LINE L2 3196 3310 -3 1596 117 0 0 chr1 187908554 187908768 -54755585 - AluSg/x SINE Alu -17 295 82 1099 177 85 52 chr1 187909101 187909406 -54754947 + MLT1A1 LTR MaLR 1 315 -50 1681 205 88 121 chr1 187909440 187910182 -54754171 + LTR1B LTR ERV1 1 717 -109 29 0 0 0 chr1 187910272 187910301 -54754052 + AT_rich Low_complexity Low_complexity 1 29 0 3960 144 39 29 chr1 187910798 187911497 -54752856 - Tigger2 DNA MER2_type 0 2718 2013 996 157 0 0 chr1 187911493 187911652 -54752701 - Tigger2 DNA MER2_type -1470 1248 1090 * 21 36 0 0 chr1 187912574 187912602 -54751751 + AT_rich Low_complexity Low_complexity 1 28 0 2041 132 0 3 chr1 187912624 187912911 -54751442 + AluSx SINE Alu 13 298 -14 23 0 0 0 chr1 187912985 187913008 -54751345 + AT_rich Low_complexity Low_complexity 1 23 0 312 320 68 0 chr1 187913210 187913313 -54751040 - L2 LINE L2 0 3313 3204 391 338 127 5 chr1 187913325 187913538 -54750815 - MIR SINE MIR -12 250 12 180 0 0 0 chr1 187913648 187913668 -54750685 + (CA)n Simple_repeat Simple_repeat 2 21 0 364 237 70 35 chr1 187915276 187915390 -54748963 - L1ME LINE L1 -5710 360 243 180 0 0 0 chr1 187915706 187915726 -54748627 + (CACTA)n Simple_repeat Simple_repeat 3 22 0 238 320 146 27 chr1 187915943 187916162 -54748191 - MIR SINE MIR -12 250 6 205 306 93 19 chr1 187916691 187916799 -54747554 + MIR SINE MIR 71 186 -76 24 32 0 0 chr1 187916800 187916831 -54747522 + AT_rich Low_complexity Low_complexity 1 31 0 202 279 29 29 chr1 187916832 187916900 -54747453 - L2 LINE L2 -4 3309 3242 24 85 0 0 chr1 187917697 187917756 -54746597 + AT_rich Low_complexity Low_complexity 1 59 0 308 389 7 7 chr1 187920205 187920354 -54743999 - L2 LINE L2 -295 2977 2829 347 296 58 54 chr1 187920717 187920830 -54743523 - MIR SINE MIR -3 259 148 1845 127 87 9 chr1 187920830 187921176 -54743177 - THE1C LTR MaLR -2 373 1 347 296 58 54 chr1 187921176 187921285 -54743068 - MIR SINE MIR -114 148 36 2571 77 0 0 chr1 187921620 187921947 -54742406 + MLT2A1 LTR ERVL 1 327 -117 315 0 0 0 chr1 187921958 187921993 -54742360 + (TG)n Simple_repeat Simple_repeat 2 36 0 942 144 0 0 chr1 187921994 187922174 -54742179 + (TA)n Simple_repeat Simple_repeat 1 180 0 313 304 0 22 chr1 187922181 187922273 -54742080 + L1MC4 LINE L1 6614 6703 -1339 225 178 0 0 chr1 187922277 187922322 -54742031 + (CATA)n Simple_repeat Simple_repeat 2 46 0 273 204 0 0 chr1 187922323 187922377 -54741976 + MLT2A1 LTR ERVL 391 444 0 1831 166 3 53 chr1 187924412 187924767 -54739586 - MER1B DNA MER1_type 0 337 1 29 28 0 0 chr1 187924982 187925018 -54739335 + AT_rich Low_complexity Low_complexity 1 36 0 186 350 17 0 chr1 187925713 187925773 -54738580 + L2 LINE L2 3160 3220 -52 1878 236 39 18 chr1 187927139 187927631 -54736722 + MLT2A1-int LTR ERVL 3 461 -4562 2117 298 63 65 chr1 187928352 187929861 -54734492 + MLT2A1-int LTR ERVL 789 3535 -1950 265 343 36 29 chr1 187930047 187930184 -54734169 + MER70B-int LTR ERVL 2476 2613 -2410 794 148 7 28 chr1 187930290 187930432 -54733921 + AluSg/x SINE Alu 156 294 -18 5873 226 37 17 chr1 187931610 187933088 -54731265 + MER70B-int LTR ERVL 3481 5023 0 2380 197 12 117 chr1 187933094 187933735 -54730618 + MER70B LTR ERVL 2 575 -3 518 309 40 48 chr1 187936331 187936603 -54727750 - LTR16A LTR ERVL 0 450 181 405 317 154 16 chr1 187936698 187937017 -54727336 + LTR33 LTR ERVL 157 519 -2 550 346 92 31 chr1 187937272 187937826 -54726527 + L2 LINE L2 2728 3313 0 186 313 60 24 chr1 187937839 187937922 -54726431 - L3b LINE CR1 -72 1511 1426 21 0 0 0 chr1 187938706 187938727 -54725626 + AT_rich Low_complexity Low_complexity 1 21 0 428 125 0 0 chr1 187939039 187939103 -54725250 + MADE1 DNA Mariner 1 64 -16 1003 233 14 9 chr1 187940596 187940819 -54723534 - MLT1B LTR MaLR -2 388 165 603 221 38 8 chr1 187941162 187941293 -54723060 - MLT1B LTR MaLR -214 151 17 374 145 16 0 chr1 187943623 187943685 -54720668 - MER103 DNA DNA -101 65 3 198 103 0 0 chr1 187946019 187946048 -54718305 + (TA)n Simple_repeat Simple_repeat 2 30 0 2149 105 0 0 chr1 187946082 187946367 -54717986 + AluSg1 SINE Alu 1 285 -24 1266 281 47 28 chr1 187947368 187947835 -54716518 - MLT1D LTR MaLR -29 476 1 2259 37 0 0 chr1 187950079 187950350 -54714003 + L1PA4 LINE L1 5878 6148 -7 12548 176 27 17 chr1 187950463 187954005 -54710348 - L1MA2 LINE L1 0 7723 4065 2419 236 52 0 chr1 187954016 187954499 -54709854 - L1MA2 LINE L1 -6959 606 87 213 65 0 0 chr1 187954499 187954530 -54709823 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2419 236 52 0 chr1 187954530 187954619 -54709734 - L1MA2 LINE L1 -7478 87 4 824 234 51 43 chr1 187954667 187954923 -54709430 + MLT1E LTR MaLR 10 267 -326 1571 229 103 28 chr1 187954937 187955431 -54708922 - LTR55 LTR ERV -17 531 1 806 282 54 22 chr1 187955431 187955708 -54708645 + MLT1E LTR MaLR 266 551 -16 2053 171 34 35 chr1 187956609 187957158 -54707195 + MLT2A2 LTR ERVL 1 553 -1 1715 291 47 26 chr1 187957853 187958431 -54705922 + MLT1E LTR MaLR 1 590 -3 690 313 20 0 chr1 187958486 187958687 -54705666 - MER58A DNA MER1_type -16 208 4 794 283 119 41 chr1 187958755 187959518 -54704835 + L1M4 LINE L1 2555 3377 -2769 312 294 147 7 chr1 187959777 187960049 -54704304 + L1MEc LINE L1 1237 1546 -5279 3564 219 38 8 chr1 187960059 187960748 -54703605 - L1 LINE L1 -1185 4961 4241 270 0 0 0 chr1 187960748 187960778 -54703575 + (TG)n Simple_repeat Simple_repeat 2 31 0 3564 219 38 8 chr1 187960778 187960937 -54703416 - L1 LINE L1 -1905 4241 4088 265 191 16 0 chr1 187960936 187960999 -54703354 + L1MA9 LINE L1 4970 5033 -1113 * 1620 203 89 115 chr1 187960967 187961637 -54702716 + L1MA9 LINE L1 5652 6298 -14 334 267 52 96 chr1 187961651 187961842 -54702511 + L1MEc LINE L1 1401 1580 -4962 2433 201 39 50 chr1 187961842 187962400 -54701953 + MLT2B3 LTR ERVL 1 552 -2 334 267 52 96 chr1 187962400 187962459 -54701894 + L1MEc LINE L1 1580 1640 -4902 24 0 0 0 chr1 187963053 187963077 -54701276 + AT_rich Low_complexity Low_complexity 1 24 0 228 185 15 15 chr1 187963351 187963378 -54700975 + (TA)n Simple_repeat Simple_repeat 1 27 -38 2190 177 52 5 chr1 187963378 187963785 -54700568 + MSTB LTR MaLR 1 426 0 228 185 15 15 chr1 187963785 187963822 -54700531 + (TA)n Simple_repeat Simple_repeat 26 65 0 21 0 0 0 chr1 187963940 187963961 -54700392 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 187964395 187964434 -54699919 + AT_rich Low_complexity Low_complexity 1 39 0 542 288 13 17 chr1 187965186 187965528 -54698825 + AluYa5 SINE Alu 1 341 0 8700 178 21 13 chr1 187965528 187966065 -54698288 + MSTB-int LTR MaLR 1 533 -1118 263 49 24 0 chr1 187966065 187966106 -54698247 + (CAA)n Simple_repeat Simple_repeat 3 44 0 8700 178 21 13 chr1 187966106 187967207 -54697146 + MSTB-int LTR MaLR 533 1651 0 1380 215 111 28 chr1 187967207 187967602 -54696751 + MSTB LTR MaLR 1 428 0 28 48 0 0 chr1 187967757 187967799 -54696554 + AT_rich Low_complexity Low_complexity 1 42 0 2086 90 6 72 chr1 187968055 187968388 -54695965 + AluY SINE Alu 1 311 0 30 27 0 0 chr1 187968698 187968735 -54695618 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 187969970 187970005 -54694348 + AT_rich Low_complexity Low_complexity 1 35 0 819 288 65 37 chr1 187970134 187970839 -54693514 + L1ME LINE L1 839 1563 -4833 1789 223 76 42 chr1 187970842 187971204 -54693149 + L1ME LINE L1 4642 4990 -1245 198 0 0 0 chr1 187971204 187971226 -54693127 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 1789 223 76 42 chr1 187971226 187971769 -54692584 + L1ME LINE L1 4990 5580 -655 288 0 0 0 chr1 187971773 187971805 -54692548 + (TA)n Simple_repeat Simple_repeat 2 33 0 186 43 0 0 chr1 187971981 187972004 -54692349 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 858 155 0 0 chr1 187972010 187972139 -54692214 - AluJb SINE Alu -27 285 157 395 385 90 14 chr1 187973136 187973668 -54690685 + L2 LINE L2 2734 3313 0 246 81 0 0 chr1 187973946 187973983 -54690370 + (T)n Simple_repeat Simple_repeat 1 37 0 29819 24 0 0 chr1 187973985 187978312 -54686041 - L1HS LINE L1 -3 6152 1826 1199 208 88 50 chr1 187978475 187978793 -54685560 - MER58B DNA MER1_type 0 341 12 310 182 212 40 chr1 187980706 187980805 -54683548 + L2 LINE L2 3193 3308 -5 331 366 136 4 chr1 187981315 187981594 -54682759 - L2 LINE L2 -602 2712 2397 642 271 90 38 chr1 187981600 187982032 -54682321 + MLT1H LTR MaLR 1 516 -33 1099 241 41 28 chr1 187982113 187982403 -54681950 - MLT1E LTR MaLR -30 563 270 756 286 56 28 chr1 187982467 187982719 -54681634 - MLT1E LTR MaLR -289 304 46 258 346 50 0 chr1 187982802 187982903 -54681450 + MIR SINE MIR 6 111 -151 1594 96 4 9 chr1 187983484 187983714 -54680639 + HERVL-A2 LTR ERVL 5426 5654 0 1915 171 43 39 chr1 187983714 187984005 -54680348 + MLT2A2 LTR ERVL 1 294 -260 7356 41 12 0 chr1 187984005 187984890 -54679463 - MER11D LTR ERVK -1 896 1 1915 171 43 39 chr1 187984890 187985150 -54679203 + MLT2A2 LTR ERVL 294 552 -2 8573 60 2 4 chr1 187986248 187987320 -54677033 - MER11C LTR ERVK 0 1071 2 2477 65 0 0 chr1 187988606 187988912 -54675441 + AluY SINE Alu 1 306 -5 1885 117 3 72 chr1 187989188 187989522 -54674831 + AluSq SINE Alu 3 313 0 487 314 108 27 chr1 187989609 187989832 -54674521 - MIR SINE MIR -21 241 1 1951 103 22 4 chr1 187990660 187990932 -54673421 - AluSc SINE Alu -11 298 22 24 85 0 0 chr1 187991044 187991103 -54673250 + AT_rich Low_complexity Low_complexity 1 59 0 272 160 4 0 chr1 187991548 187991597 -54672756 - L1M2 LINE L1 -533 5758 5708 * 1330 185 31 77 chr1 187991596 187991921 -54672432 + L1MA9 LINE L1 5972 6281 -31 1827 173 31 0 chr1 187993089 187993407 -54670946 + MER2 DNA MER2_type 4 331 -14 21 0 0 0 chr1 187993468 187993489 -54670864 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 187993708 187993739 -54670614 + AT_rich Low_complexity Low_complexity 1 31 0 1732 217 42 28 chr1 187993853 187994304 -54670049 - MLT1C LTR MaLR 0 467 1 24 67 0 0 chr1 187995158 187995203 -54669150 + AT_rich Low_complexity Low_complexity 1 45 0 207 224 37 8 chr1 187995290 187995424 -54668929 + (TA)n Simple_repeat Simple_repeat 2 139 0 705 240 69 21 chr1 187996071 187996245 -54668108 - MER46C DNA MER2_type -2 336 147 273 29 0 0 chr1 187996245 187996279 -54668074 + (CA)n Simple_repeat Simple_repeat 1 34 0 705 240 69 21 chr1 187996279 187996337 -54668016 - MER46C DNA MER2_type -191 147 93 1120 222 59 41 chr1 187996479 187996817 -54667536 - MER2 DNA MER2_type 0 344 1 31 68 0 0 chr1 187996960 187997019 -54667334 + AT_rich Low_complexity Low_complexity 1 59 0 389 245 39 91 chr1 187997039 187997247 -54667106 + L1MC4 LINE L1 7189 7385 -657 458 129 8 1 chr1 187997248 187997488 -54666865 + AluSx SINE Alu 19 294 -16 374 289 136 43 chr1 187997512 187997903 -54666450 + L1MC4 LINE L1 7423 7849 -193 29 28 0 0 chr1 187998140 187998176 -54666177 + AT_rich Low_complexity Low_complexity 1 36 0 207 253 96 103 chr1 187998497 187998643 -54665710 - L2 LINE L2 0 3313 3169 475 343 107 28 chr1 187999344 187999839 -54664514 - L2 LINE L2 -1309 2005 1472 285 271 90 52 chr1 188000843 188000998 -54663355 + MLT1J LTR MaLR 2 162 -349 562 328 57 30 chr1 188001109 188001514 -54662839 + MLT1J2 LTR MaLR 31 446 -4 22 0 0 0 chr1 188001684 188001706 -54662647 + AT_rich Low_complexity Low_complexity 1 22 0 364 152 15 15 chr1 188001751 188001817 -54662536 - MER5A DNA MER1_type 0 189 124 21 0 0 0 chr1 188002953 188002974 -54661379 + AT_rich Low_complexity Low_complexity 1 21 0 262 329 30 30 chr1 188003240 188003407 -54660946 - L2 LINE L2 -1 3312 3146 552 339 97 32 chr1 188003484 188003927 -54660426 - L2 LINE L2 -15 3298 2827 1261 244 8 78 chr1 188003927 188004324 -54660029 + MLT1A2 LTR MaLR 1 369 -5 2034 296 71 57 chr1 188004339 188005322 -54659031 - L2 LINE L2 -494 2820 1824 284 234 170 32 chr1 188005328 188005422 -54658931 + L1M4b LINE L1 7 113 -6746 1591 229 66 52 chr1 188005471 188006125 -54658228 + L1M4b LINE L1 1328 1990 -4865 26 30 0 0 chr1 188006339 188006372 -54657981 + AT_rich Low_complexity Low_complexity 1 33 0 6124 53 3 1 chr1 188006372 188007138 -54657215 - L1PA5 LINE L1 0 6154 5388 2099 233 13 21 chr1 188008944 188009420 -54654933 - MER70A LTR ERVL 0 472 1 301 322 14 7 chr1 188010212 188010355 -54653998 - HERVL LTR ERVL -3000 2654 2511 2249 217 55 35 chr1 188010408 188010443 -54653910 - MLT2B3 LTR ERVL 0 554 521 693 56 0 0 chr1 188010443 188010533 -54653820 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2249 217 55 35 chr1 188010533 188011040 -54653313 - MLT2B3 LTR ERVL -33 521 1 456 222 42 60 chr1 188012122 188012289 -54652064 + L1MB8 LINE L1 6015 6178 0 268 341 57 0 chr1 188012293 188012416 -54651937 - L2 LINE L2 -1487 1827 1698 312 378 82 31 chr1 188012766 188013057 -54651296 + L2 LINE L2 2477 2782 -532 190 451 49 0 chr1 188013309 188013451 -54650902 + L2 LINE L2 3122 3270 -2 1710 244 99 12 chr1 188013611 188014112 -54650241 + MER34 LTR ERV1 11 542 0 532 277 71 76 chr1 188014560 188015045 -54649308 - MLT1G1 LTR MaLR -106 436 3 21 71 0 0 chr1 188015295 188015337 -54649016 + AT_rich Low_complexity Low_complexity 1 42 0 355 317 20 55 chr1 188015350 188015552 -54648801 - MIR SINE MIR -35 227 33 44 63 0 0 chr1 188016901 188016980 -54647373 + AT_rich Low_complexity Low_complexity 1 79 0 546 224 178 14 chr1 188017411 188017625 -54646728 + MLT1E1 LTR MaLR 1 249 -405 268 179 77 27 chr1 188017909 188018015 -54646338 + MLT1E1 LTR MaLR 108 259 -395 220 313 70 9 chr1 188019456 188019571 -54644782 + L3 LINE CR1 1301 1422 -155 247 197 26 26 chr1 188019604 188019680 -54644673 - L1MC4 LINE L1 -1841 6201 6126 2298 269 48 23 chr1 188019681 188020782 -54643571 - L1ME LINE L1 -675 5491 3804 28 0 0 0 chr1 188020967 188020995 -54643358 + AT_rich Low_complexity Low_complexity 1 28 0 217 225 0 0 chr1 188021049 188021089 -54643264 + (CA)n Simple_repeat Simple_repeat 1 40 0 598 272 68 32 chr1 188021211 188021470 -54642883 - MLT1J2 LTR MaLR -167 279 1 25 75 0 0 chr1 188021939 188021992 -54642361 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr1 188022302 188022323 -54642030 + AT_rich Low_complexity Low_complexity 1 21 0 669 12 0 0 chr1 188022654 188022735 -54641618 + L1PA2 LINE L1 6074 6154 -1 1982 122 0 17 chr1 188023539 188023834 -54640519 - AluSq SINE Alu -23 290 1 1472 267 45 46 chr1 188024151 188024699 -54639654 + MLT1H1 LTR MaLR 1 539 -3 23 54 0 0 chr1 188025597 188025634 -54638719 + AT_rich Low_complexity Low_complexity 1 37 0 275 233 44 0 chr1 188025913 188026003 -54638350 - L1MC4 LINE L1 -1334 6708 6615 291 215 0 0 chr1 188026004 188026069 -54638284 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 886 277 52 64 chr1 188026792 188027135 -54637218 - MLT1J LTR MaLR 0 511 174 2008 192 38 8 chr1 188027135 188027530 -54636823 - LTR57 LTR ERVL 0 411 5 886 277 52 64 chr1 188027530 188027703 -54636650 - MLT1J LTR MaLR -337 174 1 3839 186 97 16 chr1 188028155 188029106 -54635247 - L1MB3 LINE L1 -1 6182 5155 1740 202 3 0 chr1 188029581 188029888 -54634465 + AluJo SINE Alu 3 310 -2 2049 150 111 5 chr1 188030648 188031035 -54633318 + MSTA LTR MaLR 1 428 0 2844 6 0 0 chr1 188031044 188031377 -54632976 + AluYa5 SINE Alu 1 333 0 24 0 0 0 chr1 188031782 188031806 -54632547 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr1 188032217 188032246 -54632107 + AT_rich Low_complexity Low_complexity 1 29 0 352 345 74 35 chr1 188032972 188033175 -54631178 + MLT1I LTR MaLR 58 268 -141 884 202 78 112 chr1 188033333 188033743 -54630610 - MSTD LTR MaLR 0 396 1 240 222 16 16 chr1 188034080 188034143 -54630210 + MLT1I-int LTR MaLR 9 71 -1300 262 318 16 0 chr1 188034910 188034973 -54629380 + LTR67 LTR ERVL 127 190 -367 303 170 9 123 chr1 188035176 188035282 -54629071 + L1MC4 LINE L1 6610 6703 -1339 22 0 0 0 chr1 188035723 188035745 -54628608 + AT_rich Low_complexity Low_complexity 1 22 0 2227 199 23 94 chr1 188035995 188036550 -54627803 - LTR9 LTR ERV1 0 612 109 1964 120 7 7 chr1 188036550 188036881 -54627472 - AluSx SINE Alu 0 331 1 2227 199 23 94 chr1 188036881 188036983 -54627370 - LTR9 LTR ERV1 -503 109 1 444 278 119 54 chr1 188037075 188037370 -54626983 - HAL1 LINE L1 -546 1961 1648 242 219 61 104 chr1 188037718 188037882 -54626471 - HAL1 LINE L1 -2283 224 68 772 320 80 65 chr1 188038238 188039123 -54625230 + L2 LINE L2 1947 2844 -470 461 308 59 47 chr1 188039122 188039375 -54624978 + MIR SINE MIR 7 262 0 * 926 250 45 60 chr1 188039875 188040323 -54624030 + LTR37B LTR ERV1 8 448 -20 23 0 0 0 chr1 188040471 188040494 -54623859 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 188042033 188042058 -54622295 + AT_rich Low_complexity Low_complexity 1 25 0 709 264 31 35 chr1 188044048 188044275 -54620078 - MIR SINE MIR -10 252 27 1632 253 132 25 chr1 188045322 188045793 -54618560 - MLT2F LTR ERVL -128 535 15 4022 261 58 32 chr1 188045793 188047060 -54617293 - ERVL-F LTR ERVL -19 5745 4446 * 4645 257 45 13 chr1 188047050 188048242 -54616111 - ERVL-F LTR ERVL -1494 4270 3041 246 241 17 0 chr1 188048794 188048852 -54615501 + GA-rich Low_complexity Low_complexity 4 62 0 24 32 0 0 chr1 188048958 188048989 -54615364 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr1 188049971 188050001 -54614352 + AT_rich Low_complexity Low_complexity 1 30 0 1720 255 110 32 chr1 188050169 188050907 -54613446 - L1ME3A LINE L1 -86 6084 5290 5237 179 23 25 chr1 188050912 188052754 -54611599 - L1MA5 LINE L1 0 7002 5166 1453 126 91 49 chr1 188052819 188053082 -54611271 - AluSx SINE Alu 0 312 39 2144 147 13 53 chr1 188053082 188053411 -54610942 - MER1A DNA MER1_type -2200 502 188 3063 38 0 0 chr1 188053411 188053779 -54610574 - L1PA5 LINE L1 -6 6148 5781 2144 147 13 53 chr1 188053779 188053824 -54610529 - MER1A DNA MER1_type -2514 188 143 458 161 12 0 chr1 188053829 188053910 -54610443 - L1MA5 LINE L1 -1963 4885 4804 * 5988 199 40 12 chr1 188053909 188055363 -54608990 - L1MA5 LINE L1 -2501 4347 2853 4256 216 57 11 chr1 188055358 188056481 -54607872 - L1MA5 LINE L1 -4231 2618 1444 * 21 0 0 0 chr1 188056761 188056782 -54607571 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 188056864 188056889 -54607464 + AT_rich Low_complexity Low_complexity 1 25 0 242 305 60 80 chr1 188057912 188058063 -54606290 - L3 LINE CR1 -53 1524 1377 22 56 0 0 chr1 188058908 188058944 -54605409 + AT_rich Low_complexity Low_complexity 1 36 0 2143 112 3 0 chr1 188059390 188059684 -54604669 - AluSx SINE Alu -17 295 1 181 287 23 69 chr1 188060997 188061084 -54603269 - L2 LINE L2 -2 3270 3188 23 0 0 0 chr1 188061626 188061649 -54602704 + AT_rich Low_complexity Low_complexity 1 23 0 2521 20 0 7 chr1 188061708 188062004 -54602349 - L1PA3 LINE L1 -990 5156 4861 7626 28 1 0 chr1 188062004 188062999 -54601354 + L1PA3 LINE L1 5159 6154 -1 210 307 0 27 chr1 188063040 188063115 -54601238 + L2 LINE L2 3229 3301 -12 346 295 83 77 chr1 188063996 188064230 -54600123 - MIR SINE MIR -1 261 16 208 343 131 34 chr1 188064749 188065099 -54599254 + L2 LINE L2 2078 2461 -853 24 0 0 0 chr1 188065850 188065874 -54598479 + AT_rich Low_complexity Low_complexity 1 24 0 3394 251 101 83 chr1 188066886 188069917 -54594436 - L1MEc LINE L1 -1353 4862 1615 498 253 120 0 chr1 188069917 188070075 -54594278 - MER58C DNA MER1_type -38 177 1 3394 251 101 83 chr1 188070075 188071683 -54592670 - L1MEc LINE L1 -4600 1615 37 1596 230 54 48 chr1 188072160 188072700 -54591653 - LTR55 LTR ERV -5 543 1 1428 224 30 22 chr1 188075155 188075517 -54588836 + MLT1A1 LTR MaLR 1 365 0 666 180 16 0 chr1 188075548 188075676 -54588677 + MER7A DNA MER2_type 1 128 -218 1019 209 54 137 chr1 188076498 188076903 -54587450 - LTR47B LTR ERVL 0 443 83 7301 37 2 2 chr1 188076903 188078016 -54586337 + L1PA4 LINE L1 5042 6154 -1 1019 209 54 137 chr1 188078016 188078093 -54586260 - LTR47B LTR ERVL -360 83 1 274 325 49 8 chr1 188078171 188078294 -54586059 + MIR SINE MIR 61 188 -74 301 186 0 0 chr1 188078372 188078431 -54585922 + L1MA3 LINE L1 6234 6292 -13 384 71 0 0 chr1 188129128 188129184 -54535169 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 259 171 57 11 chr1 188129185 188129273 -54535080 - L1M3c LINE L1 -4808 2290 2199 418 155 0 0 chr1 188129280 188129338 -54535015 - MER8 DNA MER2_type 0 239 182 774 281 0 6 chr1 188129383 188129554 -54534799 - MER8 DNA MER2_type -62 177 8 665 290 88 78 chr1 188129566 188129763 -54534590 - L1M3c LINE L1 -4997 2171 1977 246 62 0 0 chr1 188129763 188129795 -54534558 + (TG)n Simple_repeat Simple_repeat 2 33 0 665 290 88 78 chr1 188129795 188130293 -54534060 - L1M3c LINE L1 -5191 1977 1469 4039 191 19 23 chr1 188130423 188131218 -54533135 - MER54B LTR ERVL -1 792 1 508 225 72 36 chr1 188131560 188131698 -54532655 - MER54B LTR ERVL -510 283 141 324 346 33 52 chr1 188131775 188131928 -54532425 - L1M3c LINE L1 -5991 1107 958 372 251 5 113 chr1 188132239 188132434 -54531919 + L2 LINE L2 2614 2787 -527 204 97 0 0 chr1 188132561 188132592 -54531761 + (CA)n Simple_repeat Simple_repeat 2 32 0 2136 105 0 20 chr1 188133575 188133880 -54530473 - AluSq SINE Alu -14 299 1 21 82 0 0 chr1 188134697 188134746 -54529607 + AT_rich Low_complexity Low_complexity 1 49 0 1832 149 7 3 chr1 188135794 188136076 -54528277 - AluSg SINE Alu -27 283 1 24 0 0 0 chr1 188136603 188136627 -54527726 + AT_rich Low_complexity Low_complexity 1 24 0 1166 49 0 0 chr1 188136628 188136771 -54527582 - L1PA5 LINE L1 -8 6146 6004 258 211 6 50 chr1 188136866 188137027 -54527326 + GA-rich Low_complexity Low_complexity 1 154 0 38177 72 5 7 chr1 188137164 188138641 -54525712 - L1PA5 LINE L1 -154 6000 4522 2296 29 7 4 chr1 188138641 188138913 -54525440 - AluY SINE Alu -1 310 38 38177 72 5 7 chr1 188138913 188143156 -54521197 - L1PA5 LINE L1 -1632 4522 289 1793 121 4 4 chr1 188143156 188143405 -54520948 + AluSg SINE Alu 44 292 -18 1183 233 148 9 chr1 188143720 188143888 -54520465 + MLT1F LTR MaLR 19 162 -380 348 43 0 0 chr1 188143888 188143934 -54520419 + (TC)n Simple_repeat Simple_repeat 2 47 0 1183 233 148 9 chr1 188143934 188144229 -54520124 + MLT1F LTR MaLR 162 534 -8 226 209 0 0 chr1 188144421 188144464 -54519889 + (CA)n Simple_repeat Simple_repeat 1 43 0 225 159 0 0 chr1 188144997 188145041 -54519312 + GA-rich Low_complexity Low_complexity 2 45 0 207 100 0 0 chr1 188145034 188145064 -54519289 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 * 810 136 5 33 chr1 188145177 188145361 -54518992 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 371 21 42 0 chr1 188145361 188145409 -54518944 + (GAAA)n Simple_repeat Simple_repeat 4 53 0 473 284 11 40 chr1 188147006 188147182 -54517171 - L2 LINE L2 -1 3312 3142 2167 301 92 35 chr1 188147417 188148663 -54515690 - L2 LINE L2 0 3313 1984 402 244 11 0 chr1 188148666 188148756 -54515597 + L2 LINE L2 1871 1961 -1353 816 241 48 78 chr1 188149645 188150081 -54514272 + HAL1b LINE L1 141 563 -785 1326 263 85 27 chr1 188150549 188150997 -54513356 - MER110 LTR ERV1 0 491 18 2231 303 53 57 chr1 188151137 188152617 -54511736 - MER110-int LTR ERV1 -6 4641 3167 379 289 23 23 chr1 188152661 188152789 -54511564 - L2 LINE L2 -3171 143 16 189 215 0 92 chr1 188152886 188152930 -54511423 - MIR SINE MIR -48 214 176 2087 233 42 57 chr1 188152930 188153544 -54510809 - MER77 LTR ERV1 0 605 1 189 215 0 92 chr1 188153544 188153564 -54510789 - MIR SINE MIR -86 176 156 328 223 16 66 chr1 188153569 188153690 -54510663 + Charlie4 DNA MER1_type 15 129 -1832 689 151 104 10 chr1 188153849 188154090 -54510263 + LTR37A LTR ERV1 198 426 0 6722 72 10 79 chr1 188154175 188155016 -54509337 - L1PA8 LINE L1 -1 6171 5356 2109 137 0 0 chr1 188155016 188155322 -54509031 + AluSp SINE Alu 2 307 -6 6722 72 10 79 chr1 188155322 188155456 -54508897 - L1PA8 LINE L1 -816 5356 5214 24 77 0 0 chr1 188155585 188155637 -54508716 + AT_rich Low_complexity Low_complexity 1 52 0 1710 325 112 19 chr1 188155872 188156682 -54507671 - L2 LINE L2 -1230 2084 1199 487 265 93 99 chr1 188156694 188157026 -54507327 - MLT1I LTR MaLR -10 399 70 508 357 49 20 chr1 188157104 188157409 -54506944 - L2 LINE L2 -2170 1144 831 543 253 78 20 chr1 188157411 188157767 -54506586 + LTR37A LTR ERV1 13 426 0 1885 292 55 38 chr1 188157767 188158513 -54505840 - L2 LINE L2 -2461 853 95 646 308 6 12 chr1 188158639 188158808 -54505545 - MER5B DNA MER1_type -10 168 1 1481 156 83 64 chr1 188158902 188159262 -54505091 - THE1C LTR MaLR 0 375 9 285 308 0 42 chr1 188159524 188159644 -54504709 + HERVL LTR ERVL 1704 1818 -3836 1660 222 43 8 chr1 188159878 188160274 -54504079 - MLT1C LTR MaLR -2 465 56 360 253 164 45 chr1 188160796 188160992 -54503361 - MLT1H LTR MaLR 0 549 332 270 0 0 0 chr1 188161226 188161256 -54503097 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 594 143 0 0 chr1 188162502 188162593 -54501760 + AluSx SINE Alu 1 91 -221 1255 127 66 5 chr1 188162685 188162882 -54501471 + AluSx SINE Alu 94 302 -10 2124 101 4 0 chr1 188163275 188163551 -54500802 + AluSp SINE Alu 3 279 -34 261 0 0 0 chr1 188163565 188163594 -54500759 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 210 318 145 62 chr1 188164180 188164504 -54499849 - L2 LINE L2 -517 2797 2447 2013 105 72 6 chr1 188165176 188165540 -54498813 - LTR7 LTR ERV1 -2 448 1 30 27 0 0 chr1 188166037 188166074 -54498279 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 188166526 188166555 -54497798 + AT_rich Low_complexity Low_complexity 1 29 0 3842 45 43 0 chr1 188166874 188167344 -54497009 - LTR2B LTR ERV1 0 490 1 1039 249 106 61 chr1 188168463 188168841 -54495512 - LTR41 LTR ERVL -6 767 373 1159 252 68 7 chr1 188168960 188169254 -54495099 - L1MDa LINE L1 -6221 319 8 42877 31 21 1 chr1 188169302 188175333 -54489020 - L1HS LINE L1 0 6155 1 207 337 0 21 chr1 188175418 188175513 -54488840 + CT-rich Low_complexity Low_complexity 2 94 0 25 0 0 0 chr1 188175722 188175747 -54488606 + AT_rich Low_complexity Low_complexity 1 25 0 26 64 0 0 chr1 188176006 188176053 -54488300 + AT_rich Low_complexity Low_complexity 1 47 0 186 326 0 0 chr1 188177365 188177414 -54486939 - L2 LINE L2 -10 3303 3255 7401 160 24 14 chr1 188179038 188180369 -54483984 + Tigger1 DNA MER2_type 1 1344 -1074 2366 80 0 19 chr1 188180714 188181025 -54483328 - AluY SINE Alu -6 305 1 4136 177 16 1 chr1 188181057 188181756 -54482597 - MER6 DNA MER2_type -156 709 1 3298 114 40 37 chr1 188181914 188182483 -54481870 - Tigger2 DNA MER2_type -1 2717 2147 8463 72 12 6 chr1 188182600 188183704 -54480649 + HERVL-A1 LTR ERVL 4545 5654 0 3289 82 2 20 chr1 188183704 188184156 -54480197 + MLT2A1 LTR ERVL 1 444 0 471 268 40 27 chr1 188184240 188184464 -54479889 - HAL1 LINE L1 -822 1685 1459 6015 191 40 31 chr1 188184827 188186223 -54478130 + L1MA4 LINE L1 3711 5119 -1027 23 68 0 0 chr1 188187225 188187269 -54477084 + AT_rich Low_complexity Low_complexity 1 44 0 2416 138 29 65 chr1 188187966 188188522 -54475831 + L1MA4 LINE L1 5757 6292 -8 200 345 182 6 chr1 188189502 188189667 -54474686 + L2 LINE L2 2867 3060 -212 949 80 0 14 chr1 188192219 188192357 -54471996 + L1PA5 LINE L1 6017 6152 -2 26 50 0 0 chr1 188192756 188192796 -54471557 + AT_rich Low_complexity Low_complexity 1 40 0 22 103 0 0 chr1 188192815 188192893 -54471460 + AT_rich Low_complexity Low_complexity 1 78 0 1718 182 39 26 chr1 188193244 188193629 -54470724 + MLT1B LTR MaLR 1 390 0 554 264 11 52 chr1 188193702 188193876 -54470477 + MIR SINE MIR 21 187 -75 33 56 0 0 chr1 188193877 188193931 -54470422 + AT_rich Low_complexity Low_complexity 1 54 0 568 324 53 55 chr1 188194064 188194479 -54469874 - L2 LINE L2 -310 3003 2589 195 204 0 0 chr1 188194556 188194610 -54469743 + GA-rich Low_complexity Low_complexity 1 54 0 217 0 0 57 chr1 188194695 188194730 -54469623 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 31 0 0 0 chr1 188195900 188195931 -54468422 + AT_rich Low_complexity Low_complexity 1 31 0 711 217 40 20 chr1 188196245 188196415 -54467938 - L1ME1 LINE L1 -33 6131 5962 242 77 103 0 chr1 188196500 188196539 -54467814 - L1M4 LINE L1 -3787 2359 2317 21357 169 24 23 chr1 188196586 188198515 -54465838 + L1M1 LINE L1 16 1941 -5624 887 114 0 0 chr1 188198515 188198638 -54465715 + FLAM_C SINE Alu 1 123 -10 21357 169 24 23 chr1 188198638 188200762 -54463591 + L1M1 LINE L1 1941 4081 -3484 2323 115 39 8 chr1 188200762 188201126 -54463227 - THE1C LTR MaLR 0 375 1 21357 169 24 23 chr1 188201126 188202634 -54461719 + L1M1 LINE L1 4081 5586 -1979 5159 151 59 5 chr1 188202854 188203738 -54460615 - Tigger2 DNA MER2_type -1786 932 1 873 264 79 27 chr1 188203837 188204194 -54460159 - MLT2D LTR ERVL 0 414 48 415 322 72 45 chr1 188204261 188204593 -54459760 - ERVL LTR ERVL -5072 692 352 968 243 63 118 chr1 188204895 188205655 -54458698 - LTR41 LTR ERVL -6 767 50 1400 231 22 3 chr1 188205684 188206043 -54458310 - L1 LINE L1 -956 5190 4825 352 198 0 12 chr1 188206261 188206342 -54458011 - MER116 DNA Mariner 0 80 1 32 0 0 0 chr1 188206551 188206583 -54457770 + AT_rich Low_complexity Low_complexity 1 32 0 352 231 44 0 chr1 188207825 188207916 -54456437 - MER58A DNA MER1_type 0 137 43 1987 158 26 5 chr1 188207916 188208301 -54456052 + L1M4 LINE L1 4404 4796 -1350 259 339 132 0 chr1 188208395 188208516 -54455837 - L2 LINE L2 0 3272 3136 322 100 33 0 chr1 188208634 188208694 -54455659 + (CA)n Simple_repeat Simple_repeat 1 62 0 25 65 0 0 chr1 188208876 188208922 -54455431 + AT_rich Low_complexity Low_complexity 1 46 0 216 294 54 54 chr1 188208977 188209069 -54455284 - L2 LINE L2 -1 3271 3180 515 271 106 21 chr1 188209838 188210026 -54454327 - MIR SINE MIR -57 205 2 317 302 58 14 chr1 188210175 188210314 -54454039 + MIR SINE MIR 65 209 -53 351 267 64 102 chr1 188210337 188210768 -54453585 - MLT1H LTR MaLR -19 530 23 5146 187 81 43 chr1 188211198 188213063 -54451290 - L1MA9 LINE L1 -407 5905 3951 21 36 0 0 chr1 188213376 188213404 -54450949 + AT_rich Low_complexity Low_complexity 1 28 0 306 341 46 0 chr1 188214092 188214265 -54450088 + L1ME4a LINE L1 5732 5912 -209 2793 111 8 0 chr1 188214553 188214949 -54449404 - MER57B LTR ERV1 0 434 36 1515 119 119 15 chr1 188214972 188215232 -54449121 - MER57B-int LTR ERV1 -1 7536 7250 238 57 29 0 chr1 188215261 188215296 -54449057 + L1P LINE L1 5233 5268 -878 1397 160 0 0 chr1 188215458 188215670 -54448683 - AluSx SINE Alu -100 212 1 4250 39 0 0 chr1 188215969 188216517 -54447836 + L1PA3 LINE L1 5634 6181 0 614 130 24 49 chr1 188216519 188216642 -54447711 - LTR54B LTR ERV1 -374 124 5 2954 102 0 0 chr1 188216642 188217044 -54447309 - MER57B-int LTR ERV1 -387 7150 6749 327 203 0 0 chr1 188217036 188217095 -54447258 - MER57B-int LTR ERV1 -1279 6537 6479 * 1266 136 4 53 chr1 188217109 188217337 -54447016 + MER57-int LTR ERV1 5694 5910 -1627 * 2046 103 38 16 chr1 188217334 188217653 -54446700 - MER57B-int LTR ERV1 -1847 5690 5365 1228 128 64 25 chr1 188217651 188217855 -54446498 - MER57B-int LTR ERV1 -5980 1557 1346 * 1291 109 0 0 chr1 188217849 188218024 -54446329 - MER57B-int LTR ERV1 -6570 967 793 * 4303 143 23 3 chr1 188218022 188218686 -54445667 - MER57B-int LTR ERV1 -6860 677 1 2285 144 74 0 chr1 188218686 188219090 -54445263 - MER57B LTR ERV1 0 434 1 3837 156 32 31 chr1 188219272 188220610 -54443743 + L1MA3 LINE L1 4468 5801 -504 238 217 54 22 chr1 188220624 188220716 -54443637 - L1MCa LINE L1 -4855 1571 1477 191 36 36 0 chr1 188220733 188220761 -54443592 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3004 120 14 0 chr1 188220771 188221256 -54443097 + L1MA3 LINE L1 5814 6305 0 556 239 80 22 chr1 188221271 188221585 -54442768 - L1MEc LINE L1 -4007 2389 2058 697 223 7 14 chr1 188221586 188221734 -54442619 - MER58B DNA MER1_type 0 341 195 810 284 89 20 chr1 188221771 188222908 -54441445 - L1MEc LINE L1 -4331 2065 832 198 209 0 0 chr1 188223990 188224033 -54440320 + (CTA)n Simple_repeat Simple_repeat 2 44 0 245 225 113 12 chr1 188224628 188224708 -54439645 - MIR SINE MIR -99 163 76 22 0 0 0 chr1 188224722 188224744 -54439609 + AT_rich Low_complexity Low_complexity 1 22 0 826 277 69 13 chr1 188224822 188225140 -54439213 - MER46C DNA MER2_type -2 336 1 198 0 0 0 chr1 188226055 188226077 -54438276 + (TA)n Simple_repeat Simple_repeat 2 23 0 637 93 0 0 chr1 188226113 188226199 -54438154 + MER41B LTR ERV1 1 86 -549 320 309 91 46 chr1 188226404 188226579 -54437774 + MIR SINE MIR 56 238 -24 352 291 47 31 chr1 188227224 188227351 -54437002 + MIR SINE MIR 116 244 -18 24 0 0 0 chr1 188229626 188229650 -54434703 + AT_rich Low_complexity Low_complexity 1 24 0 249 57 0 0 chr1 188230363 188230398 -54433955 + (TG)n Simple_repeat Simple_repeat 2 36 0 500 298 43 55 chr1 188230562 188230817 -54433536 + MIR SINE MIR 1 252 -10 22 0 0 0 chr1 188231964 188231986 -54432367 + AT_rich Low_complexity Low_complexity 1 22 0 659 67 0 0 chr1 188232519 188232608 -54431745 - L1PA8 LINE L1 -1 6171 6083 2383 66 0 0 chr1 188232609 188232911 -54431442 + L1PA7 LINE L1 5772 6073 -81 794 270 71 49 chr1 188233812 188233978 -54430375 + LTR52 LTR ERVL 5 166 -255 1869 149 7 0 chr1 188233978 188234274 -54430079 - AluJb SINE Alu -14 298 1 794 270 71 49 chr1 188234274 188234514 -54429839 + LTR52 LTR ERVL 166 420 -1 7593 246 120 71 chr1 188234514 188237900 -54426453 + LTR52-int LTR ERVL 3 3555 -1 1034 259 139 0 chr1 188237901 188238260 -54426093 + LTR52 LTR ERVL 1 409 -12 24 32 0 0 chr1 188238316 188238347 -54426006 + AT_rich Low_complexity Low_complexity 1 31 0 234 150 0 0 chr1 188238690 188238730 -54425623 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr1 188239266 188239294 -54425059 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 188239469 188239492 -54424861 + AT_rich Low_complexity Low_complexity 1 23 0 252 122 0 0 chr1 188240055 188240096 -54424257 + (TG)n Simple_repeat Simple_repeat 2 42 0 243 88 0 0 chr1 188240172 188240206 -54424147 + (TG)n Simple_repeat Simple_repeat 2 35 0 285 89 0 0 chr1 188240367 188240412 -54423941 + (CA)n Simple_repeat Simple_repeat 2 46 0 205 303 13 40 chr1 188241424 188241500 -54422853 - MIR SINE MIR -166 96 23 307 113 0 63 chr1 188242045 188242108 -54422245 - L1MB1 LINE L1 -279 5899 5841 1011 170 82 0 chr1 188242115 188242321 -54422032 + L1MA9 LINE L1 5933 6155 -157 23 54 0 0 chr1 188242716 188242753 -54421600 + AT_rich Low_complexity Low_complexity 1 37 0 830 266 48 4 chr1 188244214 188244462 -54419891 - MER46C DNA MER2_type -1 337 79 1885 284 109 37 chr1 188245243 188246547 -54417806 - HAL1 LINE L1 -5 2502 1105 570 283 93 22 chr1 188246528 188246754 -54417599 - HAL1 LINE L1 -1625 882 641 * 25 75 0 0 chr1 188247177 188247230 -54417123 + AT_rich Low_complexity Low_complexity 1 53 0 1673 179 76 21 chr1 188248164 188248494 -54415859 + MLT1A1 LTR MaLR 10 357 -8 2177 111 0 23 chr1 188248766 188249072 -54415281 - AluSg SINE Alu -11 299 1 464 211 0 35 chr1 188250400 188250514 -54413839 - AluJb SINE Alu -5 307 198 2248 76 24 0 chr1 188251105 188251393 -54412960 - AluY SINE Alu -16 295 1 1792 135 7 7 chr1 188252186 188252489 -54411864 - AluSx SINE Alu 0 303 1 1573 119 58 34 chr1 188252516 188252810 -54411543 + AluY SINE Alu 11 311 0 204 40 0 0 chr1 188252813 188252838 -54411515 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 306 174 87 87 chr1 188253103 188253218 -54411135 - MER112 DNA MER1_type -72 188 74 2227 131 0 0 chr1 188253294 188253606 -54410747 + AluSx SINE Alu 1 312 0 477 0 0 0 chr1 188253608 188253661 -54410692 + (TA)n Simple_repeat Simple_repeat 1 53 0 1870 149 89 3 chr1 188255554 188255890 -54408463 + MLT1A1 LTR MaLR 1 365 0 402 21 0 0 chr1 188255999 188256046 -54408307 + (CA)n Simple_repeat Simple_repeat 1 47 0 333 0 0 0 chr1 188256822 188256859 -54407494 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 213 310 0 56 chr1 188257079 188257150 -54407203 - L2 LINE L2 -6 3307 3241 258 344 74 70 chr1 188257349 188257507 -54406846 - L2 LINE L2 -192 3080 2919 200 59 29 0 chr1 188257507 188257541 -54406812 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 258 344 74 70 chr1 188257541 188257652 -54406701 - L2 LINE L2 -353 2919 2810 253 321 19 19 chr1 188257659 188257765 -54406588 + MER94 DNA DNA 29 134 0 391 343 109 44 chr1 188257765 188258239 -54406114 - L2 LINE L2 -512 2802 2296 547 301 73 16 chr1 188258239 188258485 -54405868 + MIR SINE MIR 2 261 -1 551 333 112 29 chr1 188258487 188258872 -54405481 + L2 LINE L2 2897 3313 0 256 326 64 57 chr1 188260178 188260442 -54403911 + L2 LINE L2 2557 2822 -492 275 336 100 0 chr1 188261084 188261224 -54403129 + Charlie8 DNA MER1_type 2 155 -2262 184 275 99 53 chr1 188261534 188261665 -54402688 - L2 LINE L2 -12 3301 3165 2376 172 50 13 chr1 188261674 188261961 -54402392 + L1MA7 LINE L1 3908 4224 -1922 2386 60 0 19 chr1 188261961 188262278 -54402075 + AluY SINE Alu 1 311 0 2376 172 50 13 chr1 188262278 188262512 -54401841 + L1MA7 LINE L1 4224 4448 -1698 2115 100 0 0 chr1 188262672 188262942 -54401411 - AluSc SINE Alu -39 270 1 1257 166 41 50 chr1 188262945 188263583 -54400770 + L1MA7 LINE L1 5559 6291 0 28 0 0 0 chr1 188264049 188264077 -54400276 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 188264182 188264210 -54400143 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr1 188265475 188265500 -54398853 + (TC)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr1 188265583 188265611 -54398742 + AT_rich Low_complexity Low_complexity 1 28 0 275 294 135 32 chr1 188266207 188266333 -54398020 + L2 LINE L2 3163 3301 -12 1662 275 49 65 chr1 188266544 188267281 -54397072 - MER21B LTR ERV1 -126 737 13 244 220 0 0 chr1 188267808 188267858 -54396495 + L1M3a LINE L1 14 63 -5892 * 3009 135 9 37 chr1 188267856 188268391 -54395962 + L1MA4 LINE L1 5388 5907 -393 276 289 31 10 chr1 188268716 188268813 -54395540 + LTR48B LTR ERV1 1 99 -545 * 1425 197 80 46 chr1 188268788 188269211 -54395142 + MER39 LTR ERV1 259 578 -7 2037 208 96 35 chr1 188269211 188269818 -54394535 + LTR48B LTR ERV1 1 644 0 2016 131 0 0 chr1 188270105 188270408 -54393945 - AluSx SINE Alu 0 303 1 1009 202 21 113 chr1 188270738 188271074 -54393279 - MLT1B LTR MaLR -3 387 83 194 246 71 63 chr1 188271091 188271217 -54393136 - MER5C DNA MER1_type -147 177 51 1017 193 104 94 chr1 188271363 188271737 -54392616 + MER67C LTR ERV1 3 380 -330 301 328 45 45 chr1 188271964 188272098 -54392255 - MIR SINE MIR -12 250 117 360 241 54 45 chr1 188272260 188272372 -54391981 - AluJo SINE Alu -85 217 105 572 269 16 28 chr1 188272530 188272712 -54391641 + MER110A LTR ERV1 282 461 -7 21 36 0 0 chr1 188275743 188275771 -54388582 + AT_rich Low_complexity Low_complexity 1 28 0 224 262 48 36 chr1 188276002 188276086 -54388267 - MIR SINE MIR -5 257 173 400 292 66 0 chr1 188276433 188276570 -54387783 - MIR SINE MIR -86 176 31 193 405 154 0 chr1 188278548 188278775 -54385578 + L2 LINE L2 2616 2877 -437 321 326 51 117 chr1 188278801 188279151 -54385202 + L2 LINE L2 2926 3252 -20 257 356 74 13 chr1 188279167 188279316 -54385037 - L3 LINE CR1 0 1577 1420 180 0 0 0 chr1 188280216 188280236 -54384117 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1219 268 142 14 chr1 188280901 188281337 -54383016 - L2 LINE L2 -2245 1069 578 21 36 0 0 chr1 188281685 188281713 -54382640 + AT_rich Low_complexity Low_complexity 1 28 0 258 81 0 0 chr1 188281756 188281793 -54382560 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 340 288 116 20 chr1 188282410 188282556 -54381797 - MIR SINE MIR -36 226 67 191 409 0 0 chr1 188282757 188282845 -54381508 - MIR SINE MIR -129 133 46 206 85 21 64 chr1 188283208 188283255 -54381098 + (TTAAA)n Simple_repeat Simple_repeat 5 49 0 31 26 0 0 chr1 188284091 188284129 -54380224 + AT_rich Low_complexity Low_complexity 1 38 0 382 148 130 19 chr1 188286104 188286212 -54378141 - L1MC5 LINE L1 -34 7927 7808 25 0 0 0 chr1 188286740 188286765 -54377588 + AT_rich Low_complexity Low_complexity 1 25 0 235 333 11 11 chr1 188288318 188288405 -54375948 - L2 LINE L2 -239 3033 2947 225 247 101 44 chr1 188288586 188288744 -54375609 - L1ME LINE L1 -267 5854 5688 286 320 80 8 chr1 188290802 188290927 -54373426 - MIR SINE MIR -30 232 99 24 32 0 0 chr1 188291466 188291497 -54372856 + AT_rich Low_complexity Low_complexity 1 31 0 192 285 62 49 chr1 188292210 188292354 -54371999 + MIR SINE MIR 86 231 -31 1285 174 124 11 chr1 188295491 188295756 -54368597 - AluSx SINE Alu -15 297 3 691 285 63 82 chr1 188295795 188296317 -54368036 + L1MEd LINE L1 700 1211 -4908 275 312 56 67 chr1 188296324 188296683 -54367670 + L1MEd LINE L1 1358 1712 -4598 366 327 63 6 chr1 188297373 188297532 -54366821 - MER69A DNA AcHobo 0 177 10 334 280 0 43 chr1 188297599 188297692 -54366661 + L1MC4 LINE L1 6614 6702 -1340 243 0 0 0 chr1 188297700 188297727 -54366626 + (TG)n Simple_repeat Simple_repeat 2 28 0 306 0 0 0 chr1 188297771 188297805 -54366548 + (TA)n Simple_repeat Simple_repeat 2 35 0 517 280 70 40 chr1 188298056 188298256 -54366097 - MIR SINE MIR 0 262 57 1194 239 105 0 chr1 188299222 188299527 -54364826 + MER58B DNA MER1_type 2 338 -3 308 290 65 43 chr1 188300455 188300593 -54363760 - MIR SINE MIR 0 262 122 1875 151 3 20 chr1 188300602 188300906 -54363447 - AluSx SINE Alu -13 299 1 2463 290 138 48 chr1 188301261 188303322 -54361031 + L2 LINE L2 1033 3297 -16 275 364 45 40 chr1 188303422 188303669 -54360684 - L2 LINE L2 -199 3073 2826 401 240 48 0 chr1 188303713 188303817 -54360536 + MER94 DNA DNA 14 122 -12 390 326 75 85 chr1 188303878 188304535 -54359818 - L2 LINE L2 -517 2797 2148 243 313 37 43 chr1 188304599 188304762 -54359591 - L2 LINE L2 -1390 1924 1763 396 55 0 0 chr1 188304834 188304889 -54359464 + (GA)n Simple_repeat Simple_repeat 2 56 0 222 333 49 31 chr1 188305100 188305262 -54359091 - L2 LINE L2 -1878 1436 1272 559 244 9 0 chr1 188305340 188305455 -54358898 - FLAM_A SINE Alu -19 123 8 23 54 0 0 chr1 188305591 188305628 -54358725 + AT_rich Low_complexity Low_complexity 1 37 0 190 271 114 14 chr1 188305958 188306028 -54358325 - MIR3 SINE MIR -9 199 123 276 244 61 76 chr1 188306034 188306165 -54358188 - MER112 DNA MER1_type -37 223 95 27 29 0 0 chr1 188306323 188306357 -54357996 + AT_rich Low_complexity Low_complexity 1 34 0 2134 149 11 6 chr1 188306406 188306762 -54357591 - MER47A DNA MER2_type 0 366 9 186 103 0 0 chr1 188307547 188307576 -54356777 + (CA)n Simple_repeat Simple_repeat 2 30 0 366 23 0 0 chr1 188307734 188307777 -54356576 + (TA)n Simple_repeat Simple_repeat 2 44 0 250 271 0 62 chr1 188307904 188308000 -54356353 + MER102b DNA MER1_type 244 333 -8 1586 182 60 9 chr1 188308160 188308495 -54355858 + MLT1A1 LTR MaLR 10 361 -4 22 35 0 0 chr1 188308754 188308783 -54355570 + AT_rich Low_complexity Low_complexity 1 29 0 441 333 91 13 chr1 188308989 188309061 -54355292 + MIR SINE MIR 3 68 -194 234 0 0 0 chr1 188309061 188309087 -54355266 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2111 125 0 0 chr1 188309089 188309393 -54354960 - AluSx SINE Alu -8 304 1 441 333 91 13 chr1 188309393 188309548 -54354805 + MIR SINE MIR 68 251 -11 1048 280 151 28 chr1 188310374 188311082 -54353271 - L2 LINE L2 -15 3298 2499 23 33 0 0 chr1 188311415 188311445 -54352908 + AT_rich Low_complexity Low_complexity 1 30 0 323 339 64 39 chr1 188311631 188311961 -54352392 - L1M4 LINE L1 -1161 4985 4648 290 279 23 12 chr1 188312166 188312252 -54352101 + L2 LINE L2 3222 3308 -5 293 309 134 0 chr1 188312254 188312403 -54351950 - MIR SINE MIR -73 189 21 369 374 58 28 chr1 188312777 188313138 -54351215 + L2 LINE L2 2590 2961 -353 365 293 36 48 chr1 188313216 188313383 -54350970 + L2 LINE L2 3148 3312 -1 1108 107 48 6 chr1 188314057 188314183 -54350170 + AluSp SINE Alu 1 137 -176 192 40 0 0 chr1 188314183 188314208 -54350145 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 1108 107 48 6 chr1 188314208 188314249 -54350104 + AluSp SINE Alu 137 175 -138 21337 35 4 0 chr1 188315129 188318338 -54346015 - L1PA3 LINE L1 -144 6011 2793 21 36 0 0 chr1 188319379 188319407 -54344946 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 188319677 188319700 -54344653 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 188320167 188320194 -54344159 + AT_rich Low_complexity Low_complexity 1 27 0 303 323 104 22 chr1 188323185 188323550 -54340803 - HAL1 LINE L1 -1045 1462 1068 234 315 34 34 chr1 188324581 188324727 -54339626 - HAL1 LINE L1 -2337 170 25 1837 140 42 62 chr1 188325759 188326144 -54338209 + MLT1B LTR MaLR 13 389 -1 189 0 0 0 chr1 188326479 188326500 -54337853 + (CA)n Simple_repeat Simple_repeat 2 22 0 270 73 0 0 chr1 188327166 188327207 -54337146 + (TG)n Simple_repeat Simple_repeat 2 42 0 210 230 0 54 chr1 188327532 188327606 -54336747 + CT-rich Low_complexity Low_complexity 4 73 0 2990 212 122 12 chr1 188327982 188328733 -54335620 - L1MC4 LINE L1 -440 7602 6728 1702 148 117 11 chr1 188328733 188329091 -54335262 + MSTD LTR MaLR 1 396 0 2990 212 122 12 chr1 188329091 188329268 -54335085 - L1MC4 LINE L1 -1314 6728 6572 1102 214 54 20 chr1 188329272 188329566 -54334787 + L1MD3 LINE L1 7691 7994 -1 23 0 0 0 chr1 188330243 188330266 -54334087 + AT_rich Low_complexity Low_complexity 1 23 0 312 235 0 0 chr1 188331225 188331293 -54333060 + L2 LINE L2 2183 2250 -1064 891 310 52 91 chr1 188331294 188331437 -54332916 + L2 LINE L2 2777 2924 -389 2173 105 3 0 chr1 188331437 188331731 -54332622 - AluSp SINE Alu -18 295 1 891 310 52 91 chr1 188331731 188332147 -54332206 + L2 LINE L2 2924 3313 0 243 261 14 0 chr1 188332642 188332711 -54331642 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 25 0 0 0 chr1 188334462 188334487 -54329866 + AT_rich Low_complexity Low_complexity 1 25 0 4937 28 0 0 chr1 188334488 188335065 -54329288 - L1PA3 LINE L1 -3 6152 5576 2197 0 0 0 chr1 188335065 188335313 -54329040 + L1PA3 LINE L1 5327 5574 -581 1882 197 53 12 chr1 188335670 188336086 -54328267 + L1MB8 LINE L1 5439 5871 -313 445 252 0 0 chr1 188336085 188336188 -54328165 + L1PB4 LINE L1 6040 6142 -14 * 967 174 0 61 chr1 188336262 188336458 -54327895 + AluJb SINE Alu 1 184 -128 834 181 62 44 chr1 188336460 188336687 -54327666 + L1MB8 LINE L1 5943 6173 -5 343 270 90 0 chr1 188339111 188339222 -54325131 - Charlie8 DNA MER1_type -2154 263 143 477 204 19 0 chr1 188340730 188340838 -54323515 + MER20B DNA MER1_type 267 376 -407 789 203 37 9 chr1 188340932 188341149 -54323204 + MER20B DNA MER1_type 543 765 -18 914 238 53 70 chr1 188341592 188341933 -54322420 - MER46C DNA MER2_type 0 338 4 236 255 0 0 chr1 188342019 188342070 -54322283 + MER65C LTR ERV1 1 51 -410 996 159 23 6 chr1 188342070 188342246 -54322107 + LTR26 LTR ERV1 1 179 -424 1197 312 14 7 chr1 188342262 188342675 -54321678 - L2 LINE L2 -2267 1047 632 245 151 58 47 chr1 188344021 188344143 -54320210 + (TATAA)n Simple_repeat Simple_repeat 1 123 0 209 57 29 0 chr1 188344178 188344213 -54320140 + (TA)n Simple_repeat Simple_repeat 1 36 0 383 241 46 138 chr1 188344256 188344451 -54319902 + MLT1J LTR MaLR 5 181 -330 1781 153 0 4 chr1 188344663 188344937 -54319416 + AluSx SINE Alu 1 273 -39 393 22 0 0 chr1 188344937 188344983 -54319370 + (TC)n Simple_repeat Simple_repeat 2 47 0 361 254 39 39 chr1 188345162 188345292 -54319061 + MIR SINE MIR 87 216 -46 22 35 0 0 chr1 188346791 188346820 -54317533 + AT_rich Low_complexity Low_complexity 1 29 0 187 324 102 0 chr1 188346831 188346939 -54317414 - MIR SINE MIR -48 214 96 2176 65 0 34 chr1 188347457 188347798 -54316555 - AluY SINE Alu 0 331 1 298 130 0 19 chr1 188348547 188348601 -54315752 - MER5C DNA MER1_type -1 323 271 541 217 42 8 chr1 188348771 188348891 -54315462 - MER5C DNA MER1_type -200 124 1 1170 140 18 5 chr1 188349366 188349588 -54314765 + L1MA9 LINE L1 6088 6312 0 1895 109 3 53 chr1 188349816 188350120 -54314233 + AluSx SINE Alu 16 304 -8 31 44 0 0 chr1 188350156 188350201 -54314152 + AT_rich Low_complexity Low_complexity 1 45 0 1094 172 5 5 chr1 188350678 188350864 -54313489 - MER7A DNA MER2_type -162 184 1 399 291 45 90 chr1 188351056 188351229 -54313124 + MIR SINE MIR 2 160 -102 2074 218 39 44 chr1 188351229 188351774 -54312579 + MLT1F LTR MaLR 1 542 0 399 291 45 90 chr1 188351774 188351868 -54312485 + MIR SINE MIR 160 257 -5 308 267 0 0 chr1 188351968 188352043 -54312310 + L1ME LINE L1 5562 5636 -485 228 147 0 0 chr1 188352917 188352951 -54311402 + L2 LINE L2 3182 3215 -98 3047 269 55 25 chr1 188352978 188354815 -54309538 - L1ME LINE L1 -680 5553 3629 487 287 66 17 chr1 188355002 188355183 -54309170 + MLT1E LTR MaLR 403 592 -1 286 314 34 39 chr1 188355277 188355484 -54308869 - L1ME LINE L1 -5831 565 360 195 237 26 0 chr1 188355639 188355677 -54308676 - L2 LINE L2 -33 3239 3201 212 292 83 42 chr1 188355879 188356023 -54308330 + L2 LINE L2 2554 2703 -611 27 0 0 0 chr1 188356277 188356304 -54308049 + AT_rich Low_complexity Low_complexity 1 27 0 615 168 32 53 chr1 188357088 188357261 -54307092 + L1MD3 LINE L1 7607 7986 -9 329 186 71 114 chr1 188357495 188357635 -54306718 + L1MC4 LINE L1 7909 8042 0 24 0 0 0 chr1 188358164 188358188 -54306165 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 188358286 188358307 -54306046 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr1 188358975 188359002 -54305351 + (TG)n Simple_repeat Simple_repeat 1 27 0 500 312 181 14 chr1 188359699 188360058 -54304295 - L2 LINE L2 -686 2628 2210 423 298 120 41 chr1 188360092 188360707 -54303646 - L1M4 LINE L1 -1897 4249 3586 275 336 70 21 chr1 188360971 188361114 -54303239 - MIR SINE MIR -111 151 2 22 35 0 0 chr1 188361345 188361374 -54302979 + AT_rich Low_complexity Low_complexity 1 29 0 282 186 81 23 chr1 188361382 188361468 -54302885 - MLT1H LTR MaLR -1 541 451 842 288 36 39 chr1 188361499 188361805 -54302548 - MLT1H LTR MaLR -198 351 47 32 57 0 0 chr1 188362638 188362691 -54301662 + AT_rich Low_complexity Low_complexity 1 53 0 223 298 64 50 chr1 188362730 188362871 -54301482 - MIR SINE MIR -12 250 108 212 279 177 13 chr1 188362893 188362972 -54301381 + MER5B DNA MER1_type 86 177 -1 354 80 0 0 chr1 188364476 188364526 -54299827 + (TG)n Simple_repeat Simple_repeat 1 50 0 983 216 10 0 chr1 188364762 188364966 -54299387 - MER3 DNA MER1_type -2 207 2 1682 210 14 11 chr1 188365062 188365414 -54298939 + MLT1A1 LTR MaLR 1 353 -12 25 0 0 0 chr1 188365713 188365738 -54298615 + AT_rich Low_complexity Low_complexity 1 25 0 237 326 197 0 chr1 188365780 188365958 -54298395 + MIR SINE MIR 50 262 0 1654 287 99 39 chr1 188366133 188368136 -54296217 + L1ME LINE L1 20 2145 -3935 * 4717 187 33 20 chr1 188368122 188369158 -54295195 + L1MC2 LINE L1 5296 6344 0 338 378 45 33 chr1 188369506 188369839 -54294514 + L2 LINE L2 2470 2806 -508 307 346 53 80 chr1 188369962 188370225 -54294128 + L2 LINE L2 2988 3243 -29 185 275 154 0 chr1 188370231 188370322 -54294031 + MIR SINE MIR 148 252 -10 21 0 0 0 chr1 188370993 188371014 -54293339 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 188371985 188372007 -54292346 + AT_rich Low_complexity Low_complexity 1 22 0 945 163 25 35 chr1 188373290 188373492 -54290861 + MER67D LTR ERV1 4 203 -311 487 330 48 11 chr1 188373494 188373682 -54290671 + L2 LINE L2 1378 1572 -1742 1637 161 97 13 chr1 188373966 188374277 -54290076 + MER1B DNA MER1_type 1 337 0 334 359 57 16 chr1 188378439 188378631 -54285722 + MIR SINE MIR 20 219 -43 182 88 0 29 chr1 188379678 188379712 -54284641 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 213 320 40 40 chr1 188380836 188380986 -54283367 - L2 LINE L2 -83 3230 3081 1795 174 19 64 chr1 188382701 188383075 -54281278 - LTR18A LTR ERVL 0 357 1 509 216 0 0 chr1 188383076 188383178 -54281175 - HERVL18 LTR ERVL 0 6047 5946 285 241 17 0 chr1 188383178 188383236 -54281117 - HERVL18 LTR ERVL -780 5267 5209 513 204 21 0 chr1 188383236 188383329 -54281024 - HERVL18 LTR ERVL -1559 4488 4394 2076 156 0 3 chr1 188383333 188383904 -54280449 - HERVL18 LTR ERVL -2470 3577 2947 * 2208 191 3 3 chr1 188383895 188384266 -54280087 - HERVL18 LTR ERVL -2959 3088 2718 1120 169 77 2 chr1 188384263 188384520 -54279833 - HERVL18 LTR ERVL -3595 2452 2119 * 276 29 0 0 chr1 188384519 188384554 -54279799 - HERVL18 LTR ERVL -4237 1810 1776 * 1979 235 29 14 chr1 188384552 188384995 -54279358 - HERVL18 LTR ERVL -4433 1614 1165 * 2156 231 0 20 chr1 188384984 188385438 -54278915 - HERVL18 LTR ERVL -5593 454 10 1908 134 23 121 chr1 188385453 188385849 -54278504 - LTR18A LTR ERVL 0 357 1 211 271 71 14 chr1 188386351 188386421 -54277932 - L2 LINE L2 -1 3271 3198 28 79 0 0 chr1 188386894 188386957 -54277396 + AT_rich Low_complexity Low_complexity 1 63 0 2202 64 7 3 chr1 188387875 188388158 -54276195 + AluY SINE Alu 1 284 -27 264 30 0 0 chr1 188388266 188388299 -54276054 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1005 259 43 12 chr1 188388530 188388855 -54275498 + MER58B DNA MER1_type 3 337 -4 30 77 0 0 chr1 188389225 188389290 -54275063 + AT_rich Low_complexity Low_complexity 1 65 0 189 378 0 0 chr1 188389902 188389976 -54274377 - L2 LINE L2 -13 3300 3227 21 0 0 0 chr1 188390286 188390307 -54274046 + AT_rich Low_complexity Low_complexity 1 21 0 1851 206 37 10 chr1 188390894 188391302 -54273051 + L1MD1 LINE L1 5446 5864 -378 344 351 42 0 chr1 188391302 188391493 -54272860 + L1MC4a LINE L1 5735 5933 -1875 2539 209 80 17 chr1 188391777 188392424 -54271929 - L1MB8 LINE L1 -3 6175 5488 495 241 0 15 chr1 188392436 188392573 -54271780 - L1MB8 LINE L1 -917 5229 5095 912 273 154 46 chr1 188392967 188393898 -54270455 + HAL1b LINE L1 159 1189 -159 25 83 0 0 chr1 188393980 188394040 -54270313 + AT_rich Low_complexity Low_complexity 1 60 0 26 64 0 0 chr1 188394333 188394380 -54269973 + AT_rich Low_complexity Low_complexity 1 47 0 7564 20 5 0 chr1 188394513 188395404 -54268949 + L1PA3 LINE L1 5259 6153 -2 188 301 24 48 chr1 188395879 188395962 -54268391 + MER5A DNA MER1_type 106 186 -3 12460 199 23 22 chr1 188398630 188403529 -54260824 + L1MA2 LINE L1 2860 7723 0 207 0 0 0 chr1 188404619 188404642 -54259711 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 70 0 0 chr1 188405070 188405113 -54259240 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr1 188405457 188405483 -54258870 + AT_rich Low_complexity Low_complexity 1 26 0 786 262 125 29 chr1 188405534 188405966 -54258387 - L1ME4a LINE L1 -267 5854 5398 26 30 0 0 chr1 188406261 188406294 -54258059 + AT_rich Low_complexity Low_complexity 1 33 0 345 308 28 56 chr1 188406314 188406457 -54257896 - L2 LINE L2 0 3272 3134 2857 209 56 14 chr1 188406580 188407244 -54257109 + MER67C LTR ERV1 1 692 -18 21 0 0 0 chr1 188407278 188407299 -54257054 + AT_rich Low_complexity Low_complexity 1 21 0 823 191 33 0 chr1 188407305 188407488 -54256865 + L1MA7 LINE L1 6095 6283 -8 272 346 105 7 chr1 188407596 188407749 -54256604 - L2 LINE L2 -703 2611 2444 567 55 14 0 chr1 188407753 188407826 -54256527 - MER4C LTR ERV1 0 465 392 632 77 11 0 chr1 188407828 188407919 -54256434 + AluSg/x SINE Alu 216 307 -2 1192 152 39 56 chr1 188407947 188408178 -54256175 - MER4B LTR ERV1 -71 539 313 23 0 0 0 chr1 188408377 188408400 -54255953 + AT_rich Low_complexity Low_complexity 1 23 0 836 178 222 57 chr1 188408980 188409290 -54255063 - L1MB7 LINE L1 0 6184 5803 180 0 0 0 chr1 188409290 188409310 -54255043 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 836 178 222 57 chr1 188409310 188409326 -54255027 - L1MB7 LINE L1 -381 5803 5791 1323 220 36 33 chr1 188409333 188409692 -54254661 - MLT1A1 LTR MaLR -4 361 2 6871 225 60 14 chr1 188409693 188411352 -54253001 - MLT1A1-int LTR MaLR 0 1735 1 1275 197 58 58 chr1 188411352 188411717 -54252636 - MLT1A1 LTR MaLR 0 365 1 1156 223 138 20 chr1 188411967 188412154 -54252199 - MSTD LTR MaLR 0 396 233 534 57 0 0 chr1 188412154 188412224 -54252129 + (GA)n Simple_repeat Simple_repeat 1 70 0 1156 223 138 20 chr1 188412224 188412390 -54251963 - MSTD LTR MaLR -163 233 1 206 245 0 0 chr1 188412447 188412500 -54251853 + A-rich Low_complexity Low_complexity 1 53 0 691 201 8 0 chr1 188413460 188413594 -54250759 + FLAM_C SINE Alu 1 135 -8 30 0 0 0 chr1 188415639 188415669 -54248684 + AT_rich Low_complexity Low_complexity 1 30 0 1377 180 252 12 chr1 188415730 188416075 -54248278 - MSTA LTR MaLR 0 428 1 240 122 0 0 chr1 188417888 188417929 -54246424 + (TG)n Simple_repeat Simple_repeat 2 42 0 1775 165 20 69 chr1 188418862 188419268 -54245085 + MLT1B LTR MaLR 1 386 -4 22 35 0 0 chr1 188419302 188419331 -54245022 + AT_rich Low_complexity Low_complexity 1 29 0 197 219 0 0 chr1 188419440 188419481 -54244872 + L2 LINE L2 3273 3313 0 1152 306 73 78 chr1 188419692 188420341 -54244012 + HAL1 LINE L1 24 675 -1832 213 108 0 0 chr1 188420341 188420378 -54243975 + (TG)n Simple_repeat Simple_repeat 1 37 0 1152 306 73 78 chr1 188420378 188421341 -54243012 + HAL1 LINE L1 675 1628 -879 2206 34 4 0 chr1 188421355 188421619 -54242734 + L1PA4 LINE L1 5729 5993 -162 352 304 37 22 chr1 188421905 188422040 -54242313 - L2 LINE L2 -5 3308 3172 343 368 108 48 chr1 188422214 188422825 -54241528 - L2 LINE L2 -385 2929 2282 192 360 40 33 chr1 188424192 188424342 -54240011 - L2 LINE L2 -451 2863 2713 374 343 91 37 chr1 188426857 188427099 -54237254 - L2 LINE L2 -253 3060 2806 390 255 141 13 chr1 188427116 188427265 -54237088 - L2 LINE L2 -702 2612 2445 313 297 25 25 chr1 188427748 188427866 -54236487 + MIR SINE MIR 97 214 -48 38 22 0 0 chr1 188427897 188427942 -54236411 + AT_rich Low_complexity Low_complexity 1 45 0 288 310 44 37 chr1 188428250 188428398 -54235955 - MIR SINE MIR -62 146 6 295 290 80 50 chr1 188428616 188428633 -54235720 + L3b LINE CR1 1155 1170 -413 180 0 0 0 chr1 188428633 188428653 -54235700 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 295 290 80 50 chr1 188428653 188428835 -54235518 + L3b LINE CR1 1170 1360 -223 1203 339 58 17 chr1 188429848 188430365 -54233988 + L2 LINE L2 2171 2708 -606 505 328 135 15 chr1 188430377 188430703 -54233650 + L2 LINE L2 2897 3261 -52 1542 163 31 62 chr1 188430791 188431111 -54233242 - AluSg SINE Alu 0 310 1 941 213 199 26 chr1 188432233 188432585 -54231768 - MLT2D LTR ERVL -1 413 1 221 104 39 52 chr1 188432598 188432675 -54231678 + T-rich Low_complexity Low_complexity 5 80 0 202 276 0 17 chr1 188432860 188432918 -54231435 - MIR SINE MIR -147 115 59 5164 151 7 22 chr1 188433189 188433871 -54230482 + L1PB4 LINE L1 5117 5782 -374 189 74 0 0 chr1 188433871 188433898 -54230455 + (CA)n Simple_repeat Simple_repeat 2 28 0 5164 151 7 22 chr1 188433898 188434265 -54230088 + L1PB4 LINE L1 5782 6153 -3 1865 134 10 10 chr1 188434349 188434648 -54229705 + AluSx SINE Alu 1 299 -13 247 282 0 14 chr1 188434938 188435009 -54229344 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 22 0 0 0 chr1 188435320 188435342 -54229011 + AT_rich Low_complexity Low_complexity 1 22 0 221 301 14 0 chr1 188435791 188435864 -54228489 + (CATA)n Simple_repeat Simple_repeat 3 76 0 217 170 0 19 chr1 188436839 188436892 -54227461 + (TTAA)n Simple_repeat Simple_repeat 1 52 0 212 266 276 0 chr1 188437428 188437532 -54226821 - MIR SINE MIR -51 157 28 308 330 22 0 chr1 188437840 188437931 -54226422 + LTR16A LTR ERVL 86 178 -272 474 286 78 63 chr1 188438121 188438213 -54226140 + L1MEd LINE L1 6 95 -6024 422 65 16 0 chr1 188438213 188438275 -54226078 + (CA)n Simple_repeat Simple_repeat 2 64 0 474 286 78 63 chr1 188438275 188438437 -54225916 + L1MEd LINE L1 95 264 -5855 1617 180 17 75 chr1 188438651 188439062 -54225291 - MLT1B LTR MaLR -3 387 1 1271 260 191 30 chr1 188439076 188439668 -54224685 + L2 LINE L2 1791 2477 -837 420 104 0 0 chr1 188439853 188439920 -54224433 + (TG)n Simple_repeat Simple_repeat 1 67 0 237 314 147 0 chr1 188441195 188441297 -54223056 - L2 LINE L2 -1 3271 3155 302 255 142 75 chr1 188441687 188441926 -54222427 - L2 LINE L2 0 3313 3059 202 170 71 27 chr1 188442826 188442938 -54221415 + (TTATA)n Simple_repeat Simple_repeat 5 121 0 5771 26 1 0 chr1 188443095 188443783 -54220570 - L1P LINE L1 -1284 4862 4174 263 217 33 0 chr1 188444259 188444319 -54220034 + MER110 LTR ERV1 166 227 -264 309 269 118 8 chr1 188444612 188444731 -54219622 - L1ME LINE L1 -297 5824 5693 27 87 0 0 chr1 188444754 188444823 -54219530 + AT_rich Low_complexity Low_complexity 1 69 0 674 212 82 22 chr1 188445269 188445453 -54218900 + LTR37B LTR ERV1 274 468 0 432 309 64 10 chr1 188445549 188445844 -54218509 + L1M4 LINE L1 4567 4877 -1269 209 291 97 39 chr1 188446462 188446565 -54217788 - L3 LINE CR1 -24 1553 1445 213 333 81 64 chr1 188446623 188446857 -54217496 - L3 LINE CR1 -419 1158 921 27 0 0 0 chr1 188447196 188447223 -54217130 + AT_rich Low_complexity Low_complexity 1 27 0 258 257 16 25 chr1 188447486 188447576 -54216777 - L1ME LINE L1 -348 5773 5683 3818 88 23 0 chr1 188448206 188448737 -54215616 - L1PA8A LINE L1 -115 6016 5474 3166 105 12 10 chr1 188448737 188449250 -54215103 + L1P LINE L1 4890 5403 -743 209 384 65 29 chr1 188449719 188449995 -54214358 - L2 LINE L2 -30 3283 2998 458 353 46 46 chr1 188450070 188450458 -54213895 - L2 LINE L2 -534 2780 2393 213 253 190 0 chr1 188451607 188451686 -54212667 + L2 LINE L2 3178 3271 -1 279 276 17 0 chr1 188452113 188452134 -54212219 - L1MA4A LINE L1 -4 6299 6279 758 276 10 0 chr1 188452134 188452333 -54212020 - L1PB4 LINE L1 -9 6147 5947 2631 39 0 3 chr1 188452711 188453023 -54211330 - AluY SINE Alu 0 311 1 722 164 0 23 chr1 188453887 188454015 -54210338 + FLAM_C SINE Alu 2 126 -7 22 35 0 0 chr1 188454757 188454786 -54209567 + AT_rich Low_complexity Low_complexity 1 29 0 180 138 0 0 chr1 188454811 188454840 -54209513 - L2 LINE L2 -8 3305 3277 1412 190 21 21 chr1 188456011 188456290 -54208063 - AluJb SINE Alu -30 282 4 182 296 20 51 chr1 188456605 188456703 -54207650 - L2 LINE L2 -1353 1961 1867 24 53 0 0 chr1 188457196 188457234 -54207119 + AT_rich Low_complexity Low_complexity 1 38 0 1439 156 56 35 chr1 188457976 188458264 -54206089 - AluJb SINE Alu -18 294 1 227 284 12 0 chr1 188458413 188458494 -54205859 + (TA)n Simple_repeat Simple_repeat 1 82 0 22 0 0 0 chr1 188459239 188459261 -54205092 + AT_rich Low_complexity Low_complexity 1 22 0 313 321 62 52 chr1 188460927 188461120 -54203233 - L2 LINE L2 -923 2391 2197 229 339 41 33 chr1 188461482 188461603 -54202750 - L2 LINE L2 -274 2998 2877 2249 65 0 86 chr1 188462390 188462728 -54201625 + AluY SINE Alu 1 309 -2 180 111 0 0 chr1 188462857 188462884 -54201469 + (A)n Simple_repeat Simple_repeat 1 27 0 243 354 92 39 chr1 188463834 188463976 -54200377 + L3 LINE CR1 1335 1493 -84 673 237 16 65 chr1 188463976 188464162 -54200191 + MER45A DNA AcHobo 2 178 0 243 354 92 39 chr1 188464162 188464225 -54200128 + L3 LINE CR1 1493 1551 -26 180 0 0 0 chr1 188465938 188465958 -54198395 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 246 245 208 9 chr1 188466986 188467092 -54197261 + MIR SINE MIR 75 201 -61 205 226 38 0 chr1 188467092 188467145 -54197208 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 398 317 227 9 chr1 188468377 188468708 -54195645 - MLT1J LTR MaLR -102 409 7 235 235 114 61 chr1 188468791 188468923 -54195430 + MIR SINE MIR 124 262 0 246 311 96 40 chr1 188470885 188471062 -54193291 + L2 LINE L2 3113 3299 -14 2641 164 78 0 chr1 188471494 188471981 -54192372 - LTR45 LTR ERV1 0 525 1 37 107 0 0 chr1 188473188 188473337 -54191016 + AT_rich Low_complexity Low_complexity 1 149 0 24 53 0 0 chr1 188473386 188473424 -54190929 + AT_rich Low_complexity Low_complexity 1 38 0 385 320 74 41 chr1 188474033 188474277 -54190076 + MIR SINE MIR 11 262 0 240 246 251 14 chr1 188475051 188475258 -54189095 + L1MEc LINE L1 1906 2161 -4235 400 263 23 60 chr1 188477449 188477582 -54186771 + L2 LINE L2 3186 3313 0 6769 248 30 8 chr1 188478993 188480585 -54183768 + L1PA12 LINE L1 18 1644 -5937 12313 229 15 24 chr1 188480653 188483918 -54180435 + L1PA12 LINE L1 2461 5696 -1888 1487 191 0 0 chr1 188483918 188484196 -54180157 + L1PA12 LINE L1 6206 6483 -1101 5696 116 7 9 chr1 188484309 188485482 -54178871 + L1PA13 LINE L1 4975 6152 -11 479 329 59 59 chr1 188486062 188486105 -54178248 - MLT1K LTR MaLR -13 575 533 6136 82 14 1 chr1 188486105 188486921 -54177432 + LTR12 LTR ERV1 1 826 0 479 329 59 59 chr1 188486921 188487289 -54177064 - MLT1K LTR MaLR -55 533 161 1857 157 231 47 chr1 188487289 188487825 -54176528 + LTR24C LTR ERV1 1 635 0 479 329 59 59 chr1 188487825 188487986 -54176367 - MLT1K LTR MaLR -426 162 2 24 0 0 0 chr1 188488399 188488423 -54175930 + AT_rich Low_complexity Low_complexity 1 24 0 1492 229 16 34 chr1 188488713 188489093 -54175260 - MER82 DNA MER2_type -85 568 196 570 253 167 0 chr1 188489366 188489540 -54174813 - MER82 DNA MER2_type -449 204 2 378 0 0 0 chr1 188489541 188489583 -54174770 + (TG)n Simple_repeat Simple_repeat 1 42 0 29 0 0 0 chr1 188489809 188489838 -54174515 + AT_rich Low_complexity Low_complexity 1 29 0 1094 84 101 34 chr1 188490391 188490570 -54173783 - L1PA7 LINE L1 -2 6152 5962 1291 118 181 0 chr1 188491239 188491477 -54172876 - AluSx SINE Alu -12 300 20 220 351 71 32 chr1 188491478 188491632 -54172721 + L3 LINE CR1 1102 1261 -316 246 229 0 0 chr1 188492318 188492388 -54171965 + CT-rich Low_complexity Low_complexity 2 71 0 3008 169 53 17 chr1 188492965 188493027 -54171326 - MER6A DNA MER2_type -260 605 547 2334 77 3 0 chr1 188493027 188493327 -54171026 + AluY SINE Alu 1 301 -10 3008 169 53 17 chr1 188493327 188493848 -54170505 - MER6A DNA MER2_type -318 547 1 908 219 16 11 chr1 188493973 188494160 -54170193 - MER2 DNA MER2_type 0 345 158 1372 151 13 8 chr1 188494213 188494452 -54169901 - MER2 DNA MER2_type -105 240 1 196 277 0 0 chr1 188546190 188546237 -54118116 + L2 LINE L2 2250 2296 -1018 321 335 41 97 chr1 188546238 188546650 -54117703 + L2 LINE L2 2882 3270 -2 475 228 30 0 chr1 188547544 188547645 -54116708 + MLT1A1 LTR MaLR 1 104 -261 2901 9 0 0 chr1 188547916 188548231 -54116122 - AluYb8 SINE Alu -3 315 1 25 31 0 0 chr1 188548490 188548522 -54115831 + AT_rich Low_complexity Low_complexity 1 32 0 415 203 0 0 chr1 188549147 188549226 -54115127 + AluJ/FLAM SINE Alu 1 79 -233 247 297 59 59 chr1 188549424 188549542 -54114811 + L2 LINE L2 3155 3272 0 200 223 54 18 chr1 188549848 188549960 -54114393 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 786 248 128 8 chr1 188550346 188550588 -54113765 - LTR16C LTR ERVL 0 491 221 188 244 0 0 chr1 188550975 188551016 -54113337 - L2 LINE L2 -12 3301 3261 329 357 25 19 chr1 188551312 188551469 -54112884 - MIR SINE MIR -87 175 18 209 136 0 23 chr1 188553561 188553605 -54110748 + (AGGGGG)n Simple_repeat Simple_repeat 6 48 0 188 342 26 35 chr1 188555211 188555325 -54109028 + L2 LINE L2 2992 3104 -168 1088 393 115 15 chr1 188556225 188556556 -54107797 + THE1B LTR MaLR 1 364 0 202 139 23 0 chr1 188557654 188557697 -54106656 + T-rich Low_complexity Low_complexity 3 46 0 202 331 34 54 chr1 188557898 188558046 -54106307 - L2 LINE L2 -196 3076 2932 809 364 77 25 chr1 188558086 188558814 -54105539 - L2 LINE L2 -417 2897 2132 214 304 0 0 chr1 188559789 188559845 -54104508 + L2 LINE L2 3215 3270 -2 606 235 143 36 chr1 188559886 188560137 -54104216 - MER2 DNA MER2_type -15 330 53 321 208 0 0 chr1 188560195 188560248 -54104105 - MER2 DNA MER2_type -286 59 7 283 333 181 0 chr1 188560376 188560514 -54103839 - MIR SINE MIR -80 182 20 26 0 0 0 chr1 188560585 188560611 -54103742 + AT_rich Low_complexity Low_complexity 1 26 0 3054 201 25 4 chr1 188560669 188561227 -54103126 + MER21B LTR ERV1 1 570 -293 180 0 0 0 chr1 188561234 188561254 -54103099 + (A)n Simple_repeat Simple_repeat 1 20 0 767 216 0 0 chr1 188561258 188561411 -54102942 + FRAM SINE Alu 2 154 -12 21 0 0 0 chr1 188561685 188561706 -54102647 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 188561954 188561989 -54102364 + AT_rich Low_complexity Low_complexity 1 35 0 439 297 139 16 chr1 188562413 188562716 -54101637 + Tigger8 DNA MER2_type 261 600 -66 539 303 129 0 chr1 188563041 188563219 -54101134 + MIR SINE MIR 34 234 -28 270 366 6 12 chr1 188564807 188564968 -54099385 - MLT1L LTR MaLR -8 607 448 396 289 55 16 chr1 188565616 188565744 -54098609 + MLT1K LTR MaLR 446 578 -10 1902 146 7 0 chr1 188566064 188566351 -54098002 + AluSx SINE Alu 10 298 -14 231 208 19 0 chr1 188567398 188567451 -54096902 + (CA)n Simple_repeat Simple_repeat 1 54 0 349 270 70 104 chr1 188567497 188567756 -54096597 + HAL1b LINE L1 62 311 -1037 2108 115 0 0 chr1 188567817 188568112 -54096241 + AluSc SINE Alu 1 295 -14 333 379 87 41 chr1 188568354 188568766 -54095587 + L1ME3A LINE L1 5378 5808 -2000 25 31 0 0 chr1 188569063 188569095 -54095258 + AT_rich Low_complexity Low_complexity 1 32 0 499 170 30 52 chr1 188569358 188569493 -54094860 + MLT1A1 LTR MaLR 1 132 -233 694 264 16 31 chr1 188569576 188569769 -54094584 - MLT1A2 LTR MaLR -12 362 173 195 129 0 0 chr1 188569769 188569800 -54094553 + (GA)n Simple_repeat Simple_repeat 2 32 0 575 347 11 0 chr1 188569883 188570073 -54094280 - L1ME LINE L1 -483 5687 5496 440 265 101 36 chr1 188570322 188570541 -54093812 + L1ME3A LINE L1 5934 6166 -4 581 300 98 24 chr1 188570700 188571157 -54093196 + HAL1b LINE L1 347 837 -511 420 327 47 58 chr1 188571172 188571447 -54092906 + MLT1I LTR MaLR 61 332 -77 271 285 81 64 chr1 188571737 188571972 -54092381 + L1MEd LINE L1 1003 1241 -5289 540 305 93 50 chr1 188572048 188572425 -54091928 + L1MEd LINE L1 1523 1915 -4625 1073 201 0 10 chr1 188572483 188572682 -54091671 + AluJo SINE Alu 1 197 -115 651 156 18 0 chr1 188572693 188572802 -54091551 + LTR10C LTR ERV1 481 591 0 498 228 0 9 chr1 188572803 188572917 -54091436 + AluJo SINE Alu 199 311 -1 22 80 0 0 chr1 188572983 188573033 -54091320 + AT_rich Low_complexity Low_complexity 1 50 0 251 208 65 0 chr1 188573504 188573581 -54090772 + GA-rich Low_complexity Low_complexity 1 82 0 361 325 76 35 chr1 188573582 188574229 -54090124 + L1MEd LINE L1 2886 3558 -2982 386 266 32 7 chr1 188574352 188574506 -54089847 + L1MEd LINE L1 3720 3877 -2663 21 0 0 0 chr1 188574732 188574753 -54089600 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr1 188574922 188574953 -54089400 + (A)n Simple_repeat Simple_repeat 1 31 0 3729 236 43 44 chr1 188577210 188579183 -54085170 + L1MCb LINE L1 3 2193 -4552 5235 211 74 61 chr1 188579210 188580252 -54084101 + L1MC3 LINE L1 6055 7218 -567 252 311 11 22 chr1 188580252 188580342 -54084011 + MLT1F1 LTR MaLR 37 125 -442 5235 211 74 61 chr1 188580342 188580910 -54083443 + L1MC3 LINE L1 7218 7777 -8 1138 214 141 42 chr1 188581272 188581655 -54082698 + MLT1C LTR MaLR 46 466 -1 2299 100 10 0 chr1 188581670 188582020 -54082333 + AluSp SINE Alu 1 353 0 304 316 84 59 chr1 188582174 188582411 -54081942 + L1ME LINE L1 5413 5655 -466 294 182 30 0 chr1 188582766 188582832 -54081521 - L1MA10 LINE L1 -1 6333 6266 2054 136 0 3 chr1 188582979 188583280 -54081073 + AluSx SINE Alu 1 300 -12 460 272 150 6 chr1 188584544 188584717 -54079636 + MIR SINE MIR 35 232 -30 2006 121 0 10 chr1 188585778 188586075 -54078278 + AluSx SINE Alu 1 294 -18 433 133 112 20 chr1 188586294 188586392 -54077961 + Charlie5 DNA MER1_type 19 125 -2487 6573 209 56 48 chr1 188586403 188586954 -54077399 + L1M2 LINE L1 3364 3909 -3656 3029 140 43 0 chr1 188586954 188587447 -54076906 - MER75 DNA T2_type 0 514 1 6573 209 56 48 chr1 188587447 188588955 -54075398 + L1M2 LINE L1 3909 5454 -2111 3760 170 18 11 chr1 188588947 188589739 -54074614 + L1M2 LINE L1 6065 6866 -743 * 1018 261 55 20 chr1 188589801 188590199 -54074154 - MER69 DNA AcHobo -252 2274 1863 1508 278 104 22 chr1 188590201 188590798 -54073555 - MER69 DNA AcHobo -580 646 1 509 333 92 5 chr1 188591979 188592186 -54072167 + MIR SINE MIR 23 247 -15 203 0 37 0 chr1 188592505 188592532 -54071821 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 633 263 56 4 chr1 188592556 188592822 -54071531 + L1ME3A LINE L1 2377 2656 -3490 1071 257 53 60 chr1 188592999 188593582 -54070771 + L1ME3A LINE L1 4825 5403 -743 3680 201 42 12 chr1 188593582 188594384 -54069969 + LTR1B LTR ERV1 1 826 0 1666 292 54 48 chr1 188594384 188595148 -54069205 + L1ME3A LINE L1 5403 6170 0 29 47 0 0 chr1 188596062 188596105 -54068248 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr1 188596382 188596404 -54067949 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 188597025 188597055 -54067298 + AT_rich Low_complexity Low_complexity 1 30 0 2324 104 0 0 chr1 188599714 188600022 -54064331 + AluSg SINE Alu 1 308 -2 672 81 0 122 chr1 188600658 188600807 -54063546 - FRAM SINE Alu 0 173 40 1056 266 0 13 chr1 188601049 188601282 -54063071 - MER8 DNA MER2_type -1 238 9 1509 192 0 20 chr1 188601950 188602098 -54062255 - AluJb SINE Alu -24 288 147 2358 50 0 44 chr1 188602098 188602415 -54061938 - AluY SINE Alu -8 303 1 1509 192 0 20 chr1 188602415 188602558 -54061795 - AluJb SINE Alu -165 147 3 2447 194 9 4 chr1 188603044 188603502 -54060851 - MER66B LTR ERV1 0 486 27 548 342 43 56 chr1 188603633 188604293 -54060060 - L2 LINE L2 -107 3206 2550 1807 192 3 33 chr1 188605056 188605420 -54058933 - MLT1A1 LTR MaLR -12 353 1 266 0 29 0 chr1 188605566 188605600 -54058753 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 640 253 56 91 chr1 188605607 188605947 -54058406 - MLT2C1 LTR ERVL -69 328 1 21 0 0 0 chr1 188606099 188606120 -54058233 + AT_rich Low_complexity Low_complexity 1 21 0 647 335 91 13 chr1 188606128 188606292 -54058061 - L1MEc LINE L1 -4576 1734 1584 1692 171 24 0 chr1 188606292 188606585 -54057768 + AluJo SINE Alu 3 302 -10 647 335 91 13 chr1 188606585 188606894 -54057459 - L1MEc LINE L1 -4726 1584 1224 442 253 50 72 chr1 188606914 188607234 -54057119 - L1MEc LINE L1 -5017 1102 790 1631 187 3 19 chr1 188607742 188608052 -54056301 - AluJo SINE Alu -7 305 1 947 228 59 0 chr1 188608119 188608321 -54056032 - MER58A DNA MER1_type -10 214 1 27 0 0 0 chr1 188608651 188608678 -54055675 + AT_rich Low_complexity Low_complexity 1 27 0 38 0 0 0 chr1 188609038 188609076 -54055277 + AT_rich Low_complexity Low_complexity 1 38 0 24 77 0 0 chr1 188609132 188609184 -54055169 + AT_rich Low_complexity Low_complexity 1 52 0 2024 142 3 0 chr1 188609286 188609597 -54054756 - AluSp SINE Alu -1 312 1 801 288 146 20 chr1 188609922 188610196 -54054157 - L1MEc LINE L1 -2995 3220 2982 1983 78 22 81 chr1 188610196 188610516 -54053837 + AluY SINE Alu 2 302 -9 801 288 146 20 chr1 188610516 188610831 -54053522 - L1MEc LINE L1 -3233 2982 2557 793 293 0 19 chr1 188610856 188611064 -54053289 + MER63A DNA MER1_type 2 205 -5 916 313 46 32 chr1 188611067 188612060 -54052293 - L1MEc LINE L1 -3688 2527 1566 1861 168 32 32 chr1 188612160 188612535 -54051818 + THE1C LTR MaLR 1 375 0 8832 147 58 11 chr1 188612535 188614043 -54050310 + THE1C-int LTR MaLR 1 1580 0 2002 157 32 16 chr1 188614043 188614412 -54049941 + THE1C LTR MaLR 1 375 0 388 291 76 37 chr1 188614414 188615042 -54049311 - L1MEc LINE L1 -4934 1462 810 351 0 0 0 chr1 188615278 188615317 -54049036 + (CA)n Simple_repeat Simple_repeat 2 40 0 305 244 64 0 chr1 188615319 188615397 -54048956 + L1MC4 LINE L1 6622 6704 -1338 28 0 0 0 chr1 188615583 188615611 -54048742 + AT_rich Low_complexity Low_complexity 1 28 0 266 321 139 16 chr1 188616156 188616343 -54048010 + L2 LINE L2 3103 3312 -1 198 0 0 0 chr1 188616534 188616556 -54047797 + (GA)n Simple_repeat Simple_repeat 1 22 0 406 113 0 0 chr1 188616980 188617042 -54047311 - Alu SINE Alu -15 297 236 2158 84 3 3 chr1 188617042 188617326 -54047027 - AluSg SINE Alu -26 284 1 351 378 92 0 chr1 188618405 188618643 -54045710 + MIR SINE MIR 2 261 -1 24 32 0 0 chr1 188619841 188619872 -54044481 + AT_rich Low_complexity Low_complexity 1 31 0 420 301 0 81 chr1 188620489 188620675 -54043678 + MER5A DNA MER1_type 18 188 -1 756 314 33 8 chr1 188621450 188621692 -54042661 - MIR SINE MIR 0 262 15 31 58 0 0 chr1 188622125 188622177 -54042176 + AT_rich Low_complexity Low_complexity 1 52 0 181 368 26 26 chr1 188622337 188622489 -54041864 - L2 LINE L2 -210 3062 2911 22 70 0 0 chr1 188623510 188623553 -54040800 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr1 188623833 188623866 -54040487 + AT_rich Low_complexity Low_complexity 1 33 0 412 355 27 57 chr1 188623870 188624236 -54040117 + L3 LINE CR1 844 1198 -379 243 0 0 0 chr1 188625161 188625188 -54039165 + (CA)n Simple_repeat Simple_repeat 1 27 0 21 95 0 0 chr1 188625669 188625732 -54038621 + AT_rich Low_complexity Low_complexity 1 63 0 25 51 0 0 chr1 188626638 188626677 -54037676 + AT_rich Low_complexity Low_complexity 1 39 0 375 389 126 21 chr1 188627040 188627714 -54036639 - L2 LINE L2 -1391 1923 1179 822 226 144 0 chr1 188627835 188628030 -54036323 + MER58A DNA MER1_type 1 223 -1 589 295 30 5 chr1 188628227 188628427 -54035926 - MLT1I LTR MaLR -204 205 1 1205 227 151 10 chr1 188629208 188629552 -54034801 - MLT1F LTR MaLR 0 542 135 2066 119 162 8 chr1 188629552 188629923 -54034430 - MSTA LTR MaLR 0 428 1 1205 227 151 10 chr1 188629923 188630050 -54034303 - MLT1F LTR MaLR -407 135 27 570 368 80 26 chr1 188630462 188631095 -54033258 + L3 LINE CR1 427 1140 -437 1913 135 10 10 chr1 188632313 188632601 -54031752 - AluSx SINE Alu -24 288 1 222 37 0 0 chr1 188632714 188632741 -54031612 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chr1 188633070 188633105 -54031248 + AT_rich Low_complexity Low_complexity 1 35 0 2960 160 20 63 chr1 188634206 188634845 -54029508 - LTR9 LTR ERV1 0 612 1 444 317 79 30 chr1 188635002 188635505 -54028848 - L1MC/D LINE L1 -789 5357 5087 578 186 0 0 chr1 188635816 188635918 -54028435 - AluSg/x SINE Alu -8 304 203 777 87 47 7 chr1 188636188 188636337 -54028016 + CT-rich Low_complexity Low_complexity 2 156 0 1113 71 35 0 chr1 188636367 188636537 -54027816 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 484 128 0 21 chr1 188636537 188636631 -54027722 + (TCCC)n Simple_repeat Simple_repeat 4 95 0 393 268 21 0 chr1 188637117 188637214 -54027139 - Tigger7 DNA MER2_type 0 2487 2389 * 498 237 123 0 chr1 188637211 188637325 -54027028 - Tigger7 DNA MER2_type -466 267 140 531 261 25 0 chr1 188637327 188637446 -54026907 - Tigger7 DNA MER2_type -303 247 126 576 226 68 26 chr1 188637451 188637641 -54026712 - L1MC/D LINE L1 -2224 5887 5690 324 0 0 0 chr1 188637646 188637682 -54026671 + (TG)n Simple_repeat Simple_repeat 2 37 0 8298 119 5 3 chr1 188637682 188639731 -54024622 - L1PA8 LINE L1 -4 6168 4115 8285 131 26 38 chr1 188639737 188640290 -54024063 + L1P LINE L1 2567 3125 -3021 7473 29 2 0 chr1 188640290 188641858 -54022495 + L1PA4 LINE L1 4586 6155 0 8285 131 26 38 chr1 188641858 188642796 -54021557 + L1P LINE L1 3125 4041 -2105 1268 254 111 8 chr1 188642785 188643475 -54020878 - L1MC/D LINE L1 -548 5687 4927 * 1567 289 70 18 chr1 188643476 188644047 -54020306 + LTR26 LTR ERV1 1 601 -2 2202 129 0 0 chr1 188644064 188644374 -54019979 + AluSx SINE Alu 3 312 0 1685 219 22 80 chr1 188644713 188645215 -54019138 + MER84-int LTR ERV1 535 1007 -5256 559 208 10 0 chr1 188645222 188645323 -54019030 + LTR26 LTR ERV1 501 602 -1 502 276 15 17 chr1 188645482 188645715 -54018638 + MER84-int LTR ERV1 1354 1609 -5067 643 364 38 36 chr1 188646261 188646783 -54017570 + MER84-int LTR ERV1 1183 1705 -5417 2286 86 7 3 chr1 188647394 188647696 -54016657 + AluY SINE Alu 2 304 -7 1698 126 0 80 chr1 188647756 188648089 -54016264 - AluSx SINE Alu 0 312 4 1772 350 52 53 chr1 188648233 188651324 -54013029 + MER84-int LTR ERV1 2393 7604 -516 25 0 0 0 chr1 188651533 188651558 -54012795 + AT_rich Low_complexity Low_complexity 1 25 0 480 320 0 0 chr1 188652671 188652818 -54011535 + MER84-int LTR ERV1 4272 4418 -536 595 288 74 16 chr1 188653226 188653483 -54010870 + LTR26 LTR ERV1 1 272 -331 947 211 5 15 chr1 188653506 188653710 -54010643 + AluJb SINE Alu 90 291 -21 321 82 0 0 chr1 188653710 188653759 -54010594 + (CA)n Simple_repeat Simple_repeat 2 50 0 1507 196 10 26 chr1 188653759 188654070 -54010283 + LTR26 LTR ERV1 298 603 0 940 293 45 16 chr1 188654108 188654535 -54009818 - L1MC/D LINE L1 -1308 4907 4469 825 300 61 4 chr1 188654549 188655059 -54009294 - L1MC/D LINE L1 -2657 3558 3020 342 332 40 65 chr1 188655456 188655905 -54008448 - L1MC/D LINE L1 -5876 520 83 417 303 68 10 chr1 188655936 188656246 -54008107 - L1M4 LINE L1 -2946 3903 3576 225 0 0 0 chr1 188656299 188656324 -54008029 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3824 37 0 0 chr1 188656324 188656779 -54007574 - L1PA3 LINE L1 -18 6137 5683 21 71 0 0 chr1 188657337 188657379 -54006974 + AT_rich Low_complexity Low_complexity 1 42 0 225 0 0 0 chr1 188658288 188658313 -54006040 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 369 62 0 0 chr1 188658312 188658360 -54005993 + (TA)n Simple_repeat Simple_repeat 1 48 0 * 459 0 0 0 chr1 188658359 188658410 -54005943 + (GA)n Simple_repeat Simple_repeat 2 52 0 1520 151 0 13 chr1 188658411 188658643 -54005710 - AluSx SINE Alu -35 277 49 27 73 0 0 chr1 188658786 188658841 -54005512 + AT_rich Low_complexity Low_complexity 1 55 0 576 329 147 37 chr1 188660147 188660874 -54003479 - L2 LINE L2 -556 2758 1952 23 0 0 0 chr1 188661029 188661052 -54003301 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 188661941 188661969 -54002384 + AT_rich Low_complexity Low_complexity 1 28 0 180 376 21 11 chr1 188662067 188662160 -54002193 - L2 LINE L2 -291 2981 2888 406 205 24 12 chr1 188662312 188662395 -54001958 - MER69 DNA AcHobo -4 2522 2439 398 268 43 7 chr1 188662411 188662549 -54001804 - MER69 DNA AcHobo -996 230 88 31 68 0 0 chr1 188663581 188663640 -54000713 + AT_rich Low_complexity Low_complexity 1 59 0 4859 156 9 26 chr1 188663975 188664998 -53999355 - L1PB4 LINE L1 -2 6154 5149 3884 249 36 81 chr1 188665004 188667455 -53996898 - L1PA15-16 LINE L1 -3261 3588 1247 492 336 87 34 chr1 188667863 188668431 -53995922 - L1M2b LINE L1 -6317 892 21 1863 177 74 22 chr1 188669222 188669629 -53994724 - MSTB1 LTR MaLR -1 431 4 21 0 0 0 chr1 188670349 188670370 -53993983 + AT_rich Low_complexity Low_complexity 1 21 0 1318 197 45 24 chr1 188670911 188671200 -53993153 + AluJo SINE Alu 1 295 -17 25 0 0 0 chr1 188671258 188671283 -53993070 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 188672013 188672035 -53992318 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr1 188672405 188672450 -53991903 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 170 0 0 chr1 188672560 188672607 -53991746 + (TATG)n Simple_repeat Simple_repeat 2 48 0 247 250 29 15 chr1 188672607 188672675 -53991678 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 300 332 33 12 chr1 188672678 188672885 -53991468 - L1MC4a LINE L1 -1226 6582 6424 8521 264 36 17 chr1 188673027 188677766 -53986587 - L1 LINE L1 -2237 4495 2 276 255 43 32 chr1 188677975 188678069 -53986284 - L1M3b LINE L1 -6186 95 1 523 222 7 15 chr1 188678266 188678401 -53985952 - L1M3d LINE L1 -5756 135 2 608 245 64 83 chr1 188678555 188679086 -53985267 - L1MDa LINE L1 -2947 3593 3073 226 301 0 0 chr1 188679187 188679260 -53985093 + L1M4 LINE L1 2917 2989 -3157 68 55 0 0 chr1 188680403 188680513 -53983840 + AT_rich Low_complexity Low_complexity 1 110 0 26 0 0 0 chr1 188681446 188681472 -53982881 + AT_rich Low_complexity Low_complexity 1 26 0 1895 163 55 17 chr1 188681592 188681953 -53982400 - THE1C LTR MaLR 0 375 1 8600 131 52 45 chr1 188681953 188683521 -53980832 - THE1C-int LTR MaLR 0 1580 1 2353 138 5 8 chr1 188683521 188683891 -53980462 - THE1C LTR MaLR 0 375 7 1789 172 44 19 chr1 188684906 188685272 -53979081 - THE1C LTR MaLR 0 375 1 2014 128 0 3 chr1 188685783 188686081 -53978272 + AluSx SINE Alu 1 297 -15 22 56 0 0 chr1 188686085 188686121 -53978232 + AT_rich Low_complexity Low_complexity 1 36 0 450 296 26 26 chr1 188686260 188686449 -53977904 + MER5A DNA MER1_type 1 189 0 411 271 188 6 chr1 188687642 188687823 -53976530 - L2 LINE L2 -1027 2287 2074 2732 248 90 37 chr1 188687868 188689187 -53975166 - L1MDa LINE L1 -3853 2687 1299 2214 69 3 23 chr1 188689854 188690160 -53974193 + AluY SINE Alu 1 300 -11 24 0 0 0 chr1 188690172 188690196 -53974157 + AT_rich Low_complexity Low_complexity 1 24 0 742 191 46 112 chr1 188690201 188690504 -53973849 - L1MA9 LINE L1 -22 6290 6008 438 127 0 0 chr1 188691744 188691815 -53972538 + (TG)n Simple_repeat Simple_repeat 2 72 0 1175 289 5 27 chr1 188692411 188692784 -53971569 - MLT1A1 LTR MaLR 0 365 1 8670 223 48 22 chr1 188692790 188695291 -53969062 + L1MA9 LINE L1 2279 4846 -1300 5294 167 31 27 chr1 188695291 188696010 -53968343 - HSMAR2 DNA Mariner -2 1300 574 2087 89 0 0 chr1 188696010 188696301 -53968052 + AluY SINE Alu 1 291 -20 5294 167 31 27 chr1 188696301 188696628 -53967725 - HSMAR2 DNA Mariner -728 574 250 3686 186 26 15 chr1 188696637 188697452 -53966901 + L1MA9 LINE L1 5489 6312 0 367 348 17 32 chr1 188697622 188697904 -53966449 - L1MC4 LINE L1 -937 6956 6602 1689 119 19 0 chr1 188697981 188698250 -53966103 - L1MA3 LINE L1 -1 6304 6031 998 197 48 6 chr1 188698517 188699974 -53964379 + L1MA8 LINE L1 4330 6282 -9 998 181 13 9 chr1 188699974 188700197 -53964156 + L1MA8 LINE L1 6064 6290 -1 1456 180 61 20 chr1 188700214 188700535 -53963818 + L1MA7 LINE L1 5769 6106 -185 219 69 0 0 chr1 188700535 188700564 -53963789 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1456 180 61 20 chr1 188700564 188700587 -53963766 + L1MA7 LINE L1 6106 6127 -164 281 155 0 0 chr1 188700765 188700823 -53963530 + L1MD3 LINE L1 7938 7995 0 24 53 0 0 chr1 188701224 188701262 -53963091 + AT_rich Low_complexity Low_complexity 1 38 0 249 236 13 19 chr1 188701561 188701669 -53962684 - L1M4 LINE L1 -5425 1117 1020 319 234 0 13 chr1 188701671 188701748 -53962605 - L1 LINE L1 -2103 4043 3968 10462 178 24 10 chr1 188701775 188705160 -53959193 - L1MA1 LINE L1 -12 7709 4276 9036 213 76 25 chr1 188705170 188706804 -53957549 - L1MA1 LINE L1 -4176 3389 1841 1298 43 0 0 chr1 188706804 188706968 -53957385 + L1PA4 LINE L1 5991 6154 -1 9036 213 76 25 chr1 188706968 188708269 -53956084 - L1MA1 LINE L1 -5724 1841 9 595 239 26 0 chr1 188708255 188708410 -53955943 - L1 LINE L1 -2167 3979 3821 * 513 242 50 11 chr1 188708401 188708583 -53955770 - L1 LINE L1 -2531 3615 3427 * 272 133 12 84 chr1 188708592 188708675 -53955678 + T-rich Low_complexity Low_complexity 3 79 0 304 273 61 0 chr1 188709711 188709843 -53954510 + L1MA10 LINE L1 6191 6330 -4 22 35 0 0 chr1 188710005 188710034 -53954319 + AT_rich Low_complexity Low_complexity 1 29 0 1683 198 57 11 chr1 188710833 188711201 -53953152 + MLT1B LTR MaLR 5 389 -1 22 99 0 0 chr1 188711215 188711286 -53953067 + AT_rich Low_complexity Low_complexity 1 71 0 355 310 146 18 chr1 188711852 188712078 -53952275 - L1MC4 LINE L1 -1008 7034 6780 1457 186 58 3 chr1 188712140 188712435 -53951918 + AluSx SINE Alu 1 311 -1 2233 83 0 17 chr1 188713883 188714183 -53950170 + AluY SINE Alu 1 295 -16 745 250 0 0 chr1 188714913 188715089 -53949264 + AluJb SINE Alu 134 309 -3 5485 241 37 16 chr1 188715102 188716327 -53948026 - L1 LINE L1 -2398 5167 3874 216 0 0 0 chr1 188716327 188716351 -53948002 + (TC)n Simple_repeat Simple_repeat 2 25 0 5485 241 37 16 chr1 188716351 188717085 -53947268 - L1 LINE L1 -3691 3874 3157 315 280 40 16 chr1 188717095 188717220 -53947133 - L1 LINE L1 -6153 1343 1216 402 21 0 0 chr1 188717361 188717408 -53946945 + (TA)n Simple_repeat Simple_repeat 1 47 0 23 0 0 0 chr1 188718785 188718808 -53945545 + AT_rich Low_complexity Low_complexity 1 23 0 307 283 52 12 chr1 188718959 188719132 -53945221 + L1MA10 LINE L1 6133 6330 0 1629 204 57 11 chr1 188720088 188720456 -53943897 + MLT1B LTR MaLR 5 389 -1 23 33 0 0 chr1 188720474 188720504 -53943849 + AT_rich Low_complexity Low_complexity 1 30 0 443 291 145 18 chr1 188721107 188721334 -53943019 - L1MC4 LINE L1 -1007 7035 6780 1848 144 20 3 chr1 188721396 188721702 -53942651 + AluSx SINE Alu 1 311 -1 313 235 15 0 chr1 188723933 188724001 -53940352 - LTR9 LTR ERV1 0 612 544 252 281 31 0 chr1 188724095 188724191 -53940162 - L1ME LINE L1 -650 5514 5416 43892 42 1 1 chr1 188724494 188730646 -53933707 - L1PA3 LINE L1 -3 6152 3 21 57 0 0 chr1 188731964 188731999 -53932354 + AT_rich Low_complexity Low_complexity 1 35 0 250 282 29 10 chr1 188732903 188733006 -53931347 + L1M4 LINE L1 5790 5894 -280 21 36 0 0 chr1 188733222 188733250 -53931103 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr1 188733467 188733501 -53930852 + AT_rich Low_complexity Low_complexity 1 34 0 252 184 0 0 chr1 188733510 188733559 -53930794 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 2026 131 3 16 chr1 188734135 188734506 -53929847 + AluSg SINE Alu 1 310 0 918 88 0 0 chr1 188736112 188736237 -53928116 + L1PA10 LINE L1 6041 6165 -3 240 293 110 0 chr1 188736269 188736351 -53928002 - MIR SINE MIR -91 171 81 225 65 0 0 chr1 188736464 188736495 -53927858 + (TATG)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr1 188736903 188736926 -53927427 + AT_rich Low_complexity Low_complexity 1 23 0 1829 164 7 0 chr1 188737873 188738166 -53926187 + AluSx SINE Alu 1 295 -17 2052 173 31 0 chr1 188738794 188739147 -53925206 + THE1B LTR MaLR 1 364 0 10194 100 23 49 chr1 188739147 188740768 -53923585 + THE1B-int LTR MaLR 1 1580 0 1997 150 21 7 chr1 188740768 188741104 -53923249 + THE1B LTR MaLR 1 362 -2 1052 199 160 11 chr1 188741673 188741935 -53922418 + AluJo SINE Alu 1 301 -1 21 0 0 0 chr1 188742240 188742261 -53922092 + AT_rich Low_complexity Low_complexity 1 21 0 8938 149 12 16 chr1 188742261 188744940 -53919413 - L1MA1 LINE L1 0 6302 3637 321 47 0 0 chr1 188746075 188746118 -53918235 + (TG)n Simple_repeat Simple_repeat 2 44 0 276 213 0 0 chr1 188746118 188746179 -53918174 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 783 132 40 1 chr1 188746179 188746330 -53918023 - L1MA5A LINE L1 -44 6256 6099 1717 179 30 54 chr1 188746481 188746888 -53917465 + MLT2C1 LTR ERVL 1 397 0 456 19 0 0 chr1 188747486 188747539 -53916814 + (TA)n Simple_repeat Simple_repeat 1 53 0 510 307 153 4 chr1 188748530 188748758 -53915595 + MLT1H1 LTR MaLR 5 266 -289 255 155 93 31 chr1 188749107 188749204 -53915149 + L1M4 LINE L1 3179 3281 -2865 283 258 16 73 chr1 188749334 188749458 -53914895 + LTR12-int LTR ERV1 4976 5092 -1666 2262 199 7 4 chr1 188750475 188750932 -53913421 - L1P LINE L1 -2243 3903 3446 2472 149 26 2 chr1 188750932 188751345 -53913008 + L1PA15 LINE L1 5738 6162 -3 715 241 80 34 chr1 188751626 188751888 -53912465 + MER58 DNA MER1_type 2 275 -2145 260 334 52 60 chr1 188751901 188752284 -53912069 + LTR12-int LTR ERV1 3626 4005 -186 2430 183 23 45 chr1 188752307 188752924 -53911429 + pTR5 LTR ERV1 741 1343 -1095 4035 118 49 96 chr1 188752940 188753803 -53910550 + LTR12 LTR ERV1 5 826 0 24 0 0 0 chr1 188755341 188755365 -53908988 + AT_rich Low_complexity Low_complexity 1 24 0 225 36 0 0 chr1 188756599 188756627 -53907726 - Alu SINE Alu -12 290 263 938 302 209 37 chr1 188756915 188757727 -53906626 - L2 LINE L2 -1186 2128 1177 15751 79 6 6 chr1 188757756 188760704 -53903649 - L1PA6 LINE L1 -1 6153 3208 5790 150 27 28 chr1 188760704 188761756 -53902597 - L1PA6 LINE L1 -5085 1061 11 604 305 132 14 chr1 188761771 188762142 -53902211 - L2 LINE L2 -2124 1190 776 305 331 39 56 chr1 188762155 188762333 -53902020 - L1M4 LINE L1 -5864 991 817 295 346 67 6 chr1 188762336 188762515 -53901838 - L1M4 LINE L1 -6016 843 654 342 195 81 20 chr1 188762542 188762670 -53901683 - L1M4 LINE L1 -6362 493 107 1782 80 4 0 chr1 188762832 188763058 -53901295 - AluY SINE Alu -5 306 80 2205 107 3 0 chr1 188764538 188764829 -53899524 - AluSp SINE Alu -21 292 1 267 54 0 0 chr1 188765422 188765459 -53898894 + (TG)n Simple_repeat Simple_repeat 2 38 0 5524 143 41 95 chr1 188765464 188766766 -53897587 - Tigger3b DNA MER2_type 0 1231 1 297 0 0 0 chr1 188766792 188766825 -53897528 + (TG)n Simple_repeat Simple_repeat 2 34 0 680 157 298 31 chr1 188767478 188767669 -53896684 + L1MC1 LINE L1 6092 6333 0 1037 207 102 69 chr1 188767795 188767936 -53896417 + MER2 DNA MER2_type 1 136 -209 2060 123 0 7 chr1 188767936 188768248 -53896105 - AluSx SINE Alu 0 310 1 1037 207 102 69 chr1 188768248 188768439 -53895914 + MER2 DNA MER2_type 136 345 0 330 235 0 0 chr1 188768439 188768541 -53895812 + (TA)n Simple_repeat Simple_repeat 1 102 0 21 0 0 0 chr1 188769580 188769601 -53894752 + AT_rich Low_complexity Low_complexity 1 21 0 1554 157 4 0 chr1 188770202 188770438 -53893915 - AluSx SINE Alu -73 239 3 21 0 0 0 chr1 188770438 188770459 -53893894 + AT_rich Low_complexity Low_complexity 1 21 0 646 261 27 27 chr1 188770880 188771064 -53893289 + MER5A DNA MER1_type 6 189 0 383 265 188 6 chr1 188772262 188772443 -53891910 - L2 LINE L2 -1027 2287 2074 2777 225 99 47 chr1 188772493 188773803 -53890550 - L1MDa LINE L1 -3853 2687 1310 2288 69 3 20 chr1 188774536 188774842 -53889511 + AluY SINE Alu 1 301 -10 24 0 0 0 chr1 188774854 188774878 -53889475 + AT_rich Low_complexity Low_complexity 1 24 0 689 211 43 109 chr1 188774883 188775186 -53889167 - L1MA9 LINE L1 -22 6290 6008 369 187 0 0 chr1 188776425 188776500 -53887853 + (TG)n Simple_repeat Simple_repeat 2 76 0 1220 284 5 27 chr1 188777094 188777467 -53886886 - MLT1A1 LTR MaLR 0 365 1 8465 221 55 18 chr1 188777473 188778674 -53885679 + L1MA9 LINE L1 2279 3434 -2712 183 42 0 0 chr1 188778674 188778698 -53885655 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8465 221 55 18 chr1 188778698 188779973 -53884380 + L1MA9 LINE L1 3434 4846 -1300 5257 167 31 27 chr1 188779973 188780692 -53883661 - HSMAR2 DNA Mariner -2 1300 574 2106 82 3 7 chr1 188780692 188780984 -53883369 + AluY SINE Alu 1 291 -20 5257 167 31 27 chr1 188780984 188781311 -53883042 - HSMAR2 DNA Mariner -728 574 250 3670 185 26 15 chr1 188781320 188782135 -53882218 + L1MA9 LINE L1 5489 6312 0 343 324 28 28 chr1 188782305 188782484 -53881869 - L1MC4 LINE L1 -1086 6956 6778 21 0 0 0 chr1 188782569 188782590 -53881763 + AT_rich Low_complexity Low_complexity 1 21 0 1676 119 19 0 chr1 188782664 188782933 -53881420 - L1MA3 LINE L1 -1 6304 6031 994 198 48 5 chr1 188783199 188784657 -53879696 + L1MA8 LINE L1 4328 6282 -9 994 177 13 9 chr1 188784657 188784880 -53879473 + L1MA8 LINE L1 6064 6290 -1 1570 170 25 47 chr1 188784899 188785264 -53879089 + L1MA7 LINE L1 5771 6127 -164 272 155 0 0 chr1 188785442 188785500 -53878853 + L1MD3 LINE L1 7938 7995 0 25 31 0 0 chr1 188785901 188785933 -53878420 + AT_rich Low_complexity Low_complexity 1 32 0 227 320 10 0 chr1 188786255 188786352 -53878001 - L1M4 LINE L1 -5425 1117 1020 314 234 0 13 chr1 188786354 188786431 -53877922 - L1 LINE L1 -2103 4043 3968 5638 124 2 2 chr1 188786458 188787343 -53877010 - L1MA1 LINE L1 -12 6290 5406 388 282 159 31 chr1 188787812 188788039 -53876314 - L1MC4 LINE L1 -1007 7035 6780 1750 168 17 3 chr1 188788101 188788398 -53875955 + AluSx SINE Alu 1 301 -11 2323 75 0 16 chr1 188789850 188790156 -53874197 + AluY SINE Alu 1 301 -10 436 390 19 0 chr1 188791153 188791466 -53872887 - L1PBb LINE L1 -5833 371 53 2098 134 3 10 chr1 188791759 188792072 -53872281 - AluSx SINE Alu -1 311 1 26 30 0 0 chr1 188793103 188793136 -53871217 + AT_rich Low_complexity Low_complexity 1 33 0 2938 161 20 63 chr1 188793651 188794290 -53870063 - LTR9 LTR ERV1 0 612 1 253 282 107 34 chr1 188794516 188794665 -53869688 - L1ME LINE L1 -600 5562 5403 25 0 0 0 chr1 188795059 188795084 -53869269 + AT_rich Low_complexity Low_complexity 1 25 0 277 296 0 0 chr1 188795157 188795228 -53869125 + C-rich Low_complexity Low_complexity 5 75 0 1110 85 23 6 chr1 188795350 188795526 -53868827 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 321 165 12 24 chr1 188795526 188795611 -53868742 + CT-rich Low_complexity Low_complexity 4 87 0 557 71 20 20 chr1 188795660 188795758 -53868595 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 778 81 17 46 chr1 188795873 188796046 -53868307 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 380 258 21 0 chr1 188796529 188796626 -53867727 - Tigger7 DNA MER2_type 0 2487 2389 * 698 232 14 0 chr1 188796623 188796761 -53867592 - Tigger7 DNA MER2_type -466 267 128 630 245 57 14 chr1 188796762 188796974 -53867379 - L1ME LINE L1 -346 5889 5669 8219 110 14 11 chr1 188796980 188799032 -53865321 - L1PA8 LINE L1 -3 6169 4115 9298 118 9 9 chr1 188799032 188800513 -53863840 + L1P LINE L1 2561 4042 -2104 1176 268 65 23 chr1 188800501 188801223 -53863130 - L1ME LINE L1 -548 5687 4927 * 1546 281 54 26 chr1 188801262 188801802 -53862551 + LTR26 LTR ERV1 47 601 -2 2115 137 0 3 chr1 188801817 188802124 -53862229 + AluSx SINE Alu 1 306 -6 205 70 70 0 chr1 188802374 188802417 -53861936 + T-rich Low_complexity Low_complexity 2 47 0 1476 239 66 71 chr1 188802445 188802994 -53861359 + HUERS-P1 LTR ERV1 462 1007 -5256 490 212 30 0 chr1 188803002 188803101 -53861252 + LTR26 LTR ERV1 501 602 -1 394 284 40 40 chr1 188803319 188803495 -53860858 + HUERS-P1 LTR ERV1 1434 1609 -5067 2019 115 14 10 chr1 188803674 188803970 -53860383 - AluSx SINE Alu -15 297 1 533 370 44 40 chr1 188804279 188804800 -53859553 + HUERS-P1 LTR ERV1 1183 1705 -5417 273 240 10 96 chr1 188805421 188805525 -53858828 + HUERS-P1 LTR ERV1 2286 2380 -5012 1588 353 52 37 chr1 188805933 188807537 -53856816 + HUERS-P1 LTR ERV1 2651 4278 -2844 185 158 79 118 chr1 188808001 188808077 -53856276 - L3 LINE CR1 -1100 477 405 505 305 54 58 chr1 188808206 188808756 -53855597 + HUERS-P1 LTR ERV1 4938 7604 -516 463 307 33 28 chr1 188810017 188810232 -53854121 + HUERS-P1 LTR ERV1 4214 4429 -525 347 250 35 43 chr1 188810527 188810643 -53853710 + HUERS-P1 LTR ERV1 6148 6262 -1 642 284 68 25 chr1 188810644 188810922 -53853431 + LTR26 LTR ERV1 1 290 -313 808 196 4 96 chr1 188810924 188811154 -53853199 + AluJb SINE Alu 90 298 -14 255 61 0 0 chr1 188811157 188811190 -53853163 + (CA)n Simple_repeat Simple_repeat 2 34 0 1575 176 6 44 chr1 188811190 188811508 -53852845 + LTR26 LTR ERV1 298 603 0 906 269 45 49 chr1 188811546 188811859 -53852494 - L1ME LINE L1 -1308 4907 4595 2473 56 0 13 chr1 188811859 188812163 -53852190 + AluY SINE Alu 1 300 -11 906 269 45 49 chr1 188812163 188812298 -53852055 - L1ME LINE L1 -1620 4595 4461 807 299 61 2 chr1 188812302 188812813 -53851540 - L1ME LINE L1 -2653 3562 3022 475 275 107 11 chr1 188813449 188813627 -53850726 + MIR SINE MIR 20 214 -48 2334 222 66 68 chr1 188813685 188814460 -53849893 + L1ME1 LINE L1 5380 6152 -14 14972 41 4 1 chr1 188814886 188816760 -53847593 - L1P2 LINE L1 -1602 4544 2665 6623 50 6 1 chr1 188816757 188817858 -53846495 + L1P2 LINE L1 4553 5656 -498 * 317 348 32 61 chr1 188818219 188818661 -53845692 - L1ME LINE L1 -5867 529 101 497 280 71 10 chr1 188818707 188819018 -53845335 - L1M4 LINE L1 -2944 3202 2873 523 57 9 38 chr1 188820511 188820616 -53843737 + (TA)n Simple_repeat Simple_repeat 2 103 0 661 41 7 62 chr1 188821368 188821513 -53842840 + (TA)n Simple_repeat Simple_repeat 2 138 0 375 23 0 0 chr1 188821512 188821556 -53842797 + (GA)n Simple_repeat Simple_repeat 2 45 0 * 1477 143 0 22 chr1 188821556 188821786 -53842567 - AluSx SINE Alu -39 273 49 1354 84 10 25 chr1 188822215 188822418 -53841935 - MER11B LTR ERVK 0 1236 1037 2183 90 0 23 chr1 188822638 188822948 -53841405 + AluY SINE Alu 1 303 -8 2166 202 29 0 chr1 188823197 188823350 -53841003 - L1P LINE L1 -2243 3903 3756 243 0 0 0 chr1 188823350 188823377 -53840976 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2166 202 29 0 chr1 188823377 188823668 -53840685 - L1P LINE L1 -2390 3756 3446 2669 136 11 5 chr1 188823668 188824089 -53840264 + L1PA15 LINE L1 5728 6163 -2 836 234 56 45 chr1 188824366 188824635 -53839718 + MER58 DNA MER1_type 4 275 -66 182 205 77 0 chr1 188825599 188825638 -53838715 + MIR SINE MIR 110 151 -111 203 265 103 26 chr1 188826212 188826329 -53838024 - L2 LINE L2 -471 2843 2718 24 32 0 0 chr1 188826993 188827024 -53837329 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr1 188827133 188827176 -53837177 + AT_rich Low_complexity Low_complexity 1 43 0 1957 124 10 13 chr1 188827794 188828093 -53836260 + AluSc SINE Alu 9 306 -3 1762 177 0 7 chr1 188828272 188828566 -53835787 - AluSx SINE Alu -20 292 1 34 24 0 0 chr1 188828782 188828823 -53835530 + AT_rich Low_complexity Low_complexity 1 41 0 234 284 11 0 chr1 188828995 188829083 -53835270 + L1ME4a LINE L1 6030 6118 -3 765 301 32 6 chr1 188830085 188830424 -53833929 + L1M4 LINE L1 4481 4828 -1318 1007 292 28 5 chr1 188830614 188831008 -53833345 + L1M4 LINE L1 4481 4883 -1263 535 178 0 8 chr1 188831027 188831145 -53833208 - L1PA13 LINE L1 -14 6149 6033 577 179 119 30 chr1 188831250 188831451 -53832902 + MER2 DNA MER2_type 105 323 -22 191 215 15 0 chr1 188831465 188831530 -53832823 + (TA)n Simple_repeat Simple_repeat 1 66 0 23 0 0 0 chr1 188832979 188833002 -53831351 + AT_rich Low_complexity Low_complexity 1 23 0 1667 178 11 0 chr1 188833149 188833462 -53830891 - AluSx SINE Alu 0 320 5 23 0 0 0 chr1 188833462 188833485 -53830868 + AT_rich Low_complexity Low_complexity 1 23 0 514 324 58 49 chr1 188834257 188834744 -53829609 - L1MEc LINE L1 -5867 529 39 884 185 0 0 chr1 188834822 188834968 -53829385 + FRAM SINE Alu 1 145 -31 611 309 27 18 chr1 188835265 188835488 -53828865 - L1MC4 LINE L1 -1039 7003 6779 310 183 17 125 chr1 188835762 188835882 -53828471 - MLT1D LTR MaLR -398 107 1 1708 191 0 0 chr1 188835937 188836274 -53828079 - AluSx SINE Alu 0 339 3 7350 142 50 29 chr1 188836869 188838188 -53826165 - THE1C-int LTR MaLR -233 1347 1 1460 166 55 68 chr1 188838188 188838259 -53826094 - THE1C LTR MaLR 0 375 305 1822 178 7 0 chr1 188838259 188838568 -53825785 + AluSx SINE Alu 1 311 -1 1460 166 55 68 chr1 188838568 188838876 -53825477 - THE1C LTR MaLR -70 305 1 411 237 93 43 chr1 188839087 188839399 -53824954 - L1MDa LINE L1 -4918 1622 1300 1187 261 103 61 chr1 188839410 188840123 -53824230 - L1MDa LINE L1 -5377 1163 31 25 0 0 0 chr1 188840930 188840955 -53823398 + AT_rich Low_complexity Low_complexity 1 25 0 740 232 88 15 chr1 188840959 188841077 -53823276 - L1MA9 LINE L1 -22 6290 6182 234 62 0 0 chr1 188841077 188841109 -53823244 + (TG)n Simple_repeat Simple_repeat 1 32 0 198 0 0 0 chr1 188841108 188841130 -53823223 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 740 232 88 15 chr1 188841109 188841274 -53823079 - L1MA9 LINE L1 -130 6182 6009 1042 136 25 25 chr1 188841989 188842187 -53822166 - L1MA5A LINE L1 0 6297 6100 1573 190 42 62 chr1 188842344 188842749 -53821604 + MLT2C1 LTR ERVL 1 397 0 408 314 186 5 chr1 188844338 188844558 -53819795 + MLT1H1 LTR MaLR 7 266 -289 245 300 0 14 chr1 188844705 188844775 -53819578 + MLT1H1 LTR MaLR 420 488 -61 344 238 40 117 chr1 188844783 188845006 -53819347 + L1 LINE L1 3073 3278 -2868 21 0 0 0 chr1 188845064 188845085 -53819268 + AT_rich Low_complexity Low_complexity 1 21 0 346 313 23 31 chr1 188845618 188845746 -53818607 + MER21-int LTR ERV1 2650 2776 -1415 1446 114 0 0 chr1 188845912 188846135 -53818218 - AluSg/x SINE Alu 0 310 93 687 122 6 94 chr1 188846436 188846617 -53817736 + L1PA11 LINE L1 6006 6170 -4 2062 147 0 0 chr1 188846631 188846943 -53817410 + AluSx SINE Alu 1 312 0 26 30 0 0 chr1 188847581 188847614 -53816739 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr1 188848165 188848204 -53816149 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr1 188849558 188849593 -53814760 + AT_rich Low_complexity Low_complexity 1 35 0 337 243 9 28 chr1 188850497 188850604 -53813749 + L1MB5 LINE L1 5790 5894 -280 21 36 0 0 chr1 188850821 188850849 -53813504 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 188851450 188851480 -53812873 + AT_rich Low_complexity Low_complexity 1 30 0 252 184 0 0 chr1 188851489 188851538 -53812815 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 2161 114 3 0 chr1 188852311 188852668 -53811685 + AluSg SINE Alu 1 358 0 904 66 8 0 chr1 188854269 188854390 -53809963 + L1PA10 LINE L1 6044 6165 -3 266 259 106 12 chr1 188854419 188854504 -53809849 - MIR SINE MIR -89 173 81 276 30 0 0 chr1 188854614 188854647 -53809706 + (TATG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr1 188855059 188855082 -53809271 + AT_rich Low_complexity Low_complexity 1 23 0 1875 150 7 3 chr1 188856023 188856317 -53808036 + AluSx SINE Alu 1 295 -17 2082 166 25 3 chr1 188856944 188857300 -53807053 + THE1B LTR MaLR 1 364 0 10367 98 18 47 chr1 188857300 188858927 -53805426 + THE1B-int LTR MaLR 1 1580 0 1948 157 22 8 chr1 188858927 188859263 -53805090 + THE1B LTR MaLR 1 362 -2 1039 190 163 12 chr1 188859860 188860118 -53804235 + AluJo SINE Alu 1 297 -5 25 0 0 0 chr1 188860426 188860451 -53803902 + AT_rich Low_complexity Low_complexity 1 25 0 8921 151 10 12 chr1 188860453 188863117 -53801236 - L1MA1 LINE L1 -7 6295 3637 1278 167 0 0 chr1 188863341 188863568 -53800785 - L1PA13 LINE L1 -39 6124 5898 1236 254 56 21 chr1 188863569 188864314 -53800039 + L1MD2 LINE L1 4892 5656 -703 636 309 64 0 chr1 188864314 188864518 -53799835 + MER58A DNA MER1_type 1 217 -7 1962 216 45 81 chr1 188864525 188865214 -53799139 + L1MD2 LINE L1 5680 6343 -16 401 268 50 30 chr1 188865279 188865477 -53798876 - L1MC4 LINE L1 -1003 7039 6838 933 275 106 47 chr1 188865491 188866050 -53798303 - MLT1G LTR MaLR -1 594 1 1702 287 188 28 chr1 188866358 188867530 -53796823 - L2 LINE L2 -1180 2134 776 384 275 126 52 chr1 188867722 188868097 -53796256 - L1M4b LINE L1 -6018 841 11 2497 45 3 13 chr1 188868173 188868483 -53795870 - AluY SINE Alu -4 307 1 26 64 0 0 chr1 188869573 188869620 -53794733 + AT_rich Low_complexity Low_complexity 1 47 0 354 23 0 0 chr1 188870629 188870672 -53793681 + (TG)n Simple_repeat Simple_repeat 2 44 0 6315 151 49 22 chr1 188870673 188871122 -53793231 - Tigger3b DNA MER2_type -1797 1231 795 561 91 11 0 chr1 188871122 188871210 -53793143 - L1PB2 LINE L1 -4 6147 6059 6315 151 49 22 chr1 188871210 188871959 -53792394 - Tigger3b DNA MER2_type -2233 795 1 288 0 0 0 chr1 188871976 188872008 -53792345 + (TG)n Simple_repeat Simple_repeat 2 33 0 515 160 21 31 chr1 188872679 188872871 -53791482 + L1MC1 LINE L1 6092 6333 0 1193 123 5 44 chr1 188873035 188873239 -53791114 + MER2 DNA MER2_type 14 209 -136 1913 130 13 30 chr1 188873768 188874068 -53790285 + AluSq SINE Alu 1 295 -18 25 31 0 0 chr1 188875871 188875903 -53788450 + AT_rich Low_complexity Low_complexity 1 32 0 439 335 66 52 chr1 188876030 188876514 -53787839 - L1MEc LINE L1 -5867 529 39 538 253 120 0 chr1 188876591 188876749 -53787604 + FRAM SINE Alu 1 176 0 738 251 36 22 chr1 188877055 188877278 -53787075 - L1MC4 LINE L1 -1038 7004 6779 271 225 8 117 chr1 188877560 188877680 -53786673 - MLT1D LTR MaLR -398 107 1 37034 87 7 29 chr1 188877742 188884036 -53780317 - L1PA6 LINE L1 -1 6153 11 22 0 0 0 chr1 188884380 188884402 -53779951 + AT_rich Low_complexity Low_complexity 1 22 0 2144 110 0 7 chr1 188884685 188884975 -53779378 - AluSx SINE Alu -24 288 1 24 103 0 0 chr1 188885100 188885187 -53779166 + AT_rich Low_complexity Low_complexity 1 87 0 2357 126 31 14 chr1 188886089 188886447 -53777906 - THE1B LTR MaLR 0 364 1 265 305 77 25 chr1 188887620 188887945 -53776408 - L1M4 LINE L1 -1542 4604 4263 200 0 100 0 chr1 188888231 188888271 -53776082 + (TAAG)n Simple_repeat Simple_repeat 3 46 0 21 0 0 0 chr1 188889484 188889505 -53774848 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr1 188889731 188889776 -53774577 + AT_rich Low_complexity Low_complexity 1 45 0 300 267 65 3 chr1 188890271 188890425 -53773928 + L1MEc LINE L1 389 1583 -857 22 70 0 0 chr1 188890640 188890683 -53773670 + AT_rich Low_complexity Low_complexity 1 43 0 342 336 87 29 chr1 188890729 188891041 -53773312 + L1MEc LINE L1 2688 3017 -3129 279 73 0 18 chr1 188891054 188891109 -53773244 - LTR66 LTR ERVL -163 447 394 226 181 111 0 chr1 188891113 188891185 -53773168 - L1MC4 LINE L1 -1339 6703 6624 * 272 186 10 82 chr1 188891125 188891222 -53773131 + L1MC4 LINE L1 6614 6703 -1339 22 0 0 0 chr1 188891486 188891508 -53772845 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 188892783 188892807 -53771546 + AT_rich Low_complexity Low_complexity 1 24 0 1165 46 0 13 chr1 188892927 188893078 -53771275 - L1PA4 LINE L1 0 6155 6007 615 47 0 0 chr1 188893180 188893265 -53771088 - L1PA4 LINE L1 -145 6010 5926 928 113 0 14 chr1 188894373 188894506 -53769847 + Tigger3(Golem) DNA MER2_type 2747 2877 -152 2011 165 9 9 chr1 188894506 188894840 -53769513 - MER1B DNA MER1_type 0 339 6 894 204 0 12 chr1 188894829 188894996 -53769357 + Tigger3(Golem) DNA MER2_type 2864 3028 -1 * 701 339 78 5 chr1 188895037 188895471 -53768882 - L2 LINE L2 -1332 1982 1517 210 266 78 0 chr1 188895537 188895601 -53768752 - L2 LINE L2 -2079 1235 1167 29 28 0 0 chr1 188896595 188896631 -53767722 + AT_rich Low_complexity Low_complexity 1 36 0 203 156 44 0 chr1 188897845 188897890 -53766463 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 2252 85 10 7 chr1 188898009 188898304 -53766049 + AluSp SINE Alu 1 296 -17 2409 86 0 0 chr1 188898414 188898715 -53765638 - AluSg SINE Alu -9 301 1 240 318 9 0 chr1 188899037 188899144 -53765209 + L1MC/D LINE L1 5424 5531 -2277 405 232 40 0 chr1 188899145 188899270 -53765083 + (TA)n Simple_repeat Simple_repeat 2 131 0 319 184 98 0 chr1 188899373 188899536 -53764817 + (TA)n Simple_repeat Simple_repeat 2 180 0 266 114 80 0 chr1 188899547 188899635 -53764718 + (TA)n Simple_repeat Simple_repeat 1 95 0 391 290 65 52 chr1 188899797 188899952 -53764401 + MIR SINE MIR 3 159 -103 37 0 0 0 chr1 188899963 188900000 -53764353 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr1 188900062 188900088 -53764265 + AT_rich Low_complexity Low_complexity 1 26 0 980 216 50 68 chr1 188900494 188900940 -53763413 - MSTD LTR MaLR 0 428 3 21 0 0 0 chr1 188901197 188901218 -53763135 + AT_rich Low_complexity Low_complexity 1 21 0 2541 43 7 3 chr1 188901312 188901614 -53762739 - AluY SINE Alu -8 303 1 1626 203 3 3 chr1 188901834 188902129 -53762224 + AluSx SINE Alu 3 297 -15 417 171 0 0 chr1 188902132 188902247 -53762106 + GA-rich Low_complexity Low_complexity 1 115 0 609 101 22 0 chr1 188902546 188902635 -53761718 + AluSg/x SINE Alu 203 293 -17 4179 194 26 17 chr1 188902694 188903805 -53760548 + L1MB8 LINE L1 5057 6178 0 312 27 0 0 chr1 188904092 188904129 -53760224 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 681 157 0 17 chr1 188904132 188904247 -53760106 - FLAM_C SINE Alu -19 124 12 4496 170 69 53 chr1 188904601 188905897 -53758456 + MER4B-int LTR ERV1 4410 5396 -1275 2250 81 0 3 chr1 188905897 188906180 -53758173 + AluY SINE Alu 1 282 -29 4496 170 69 53 chr1 188906180 188906858 -53757495 + MER4B-int LTR ERV1 5396 6061 -610 1533 152 168 9 chr1 188906873 188907189 -53757164 + LTR47A LTR ERVL 1 366 -86 535 285 82 65 chr1 188909092 188909446 -53754907 + MLT1J LTR MaLR 6 365 -146 1067 228 114 37 chr1 188909538 188909862 -53754491 + MLT1G1 LTR MaLR 245 593 -2 2104 125 0 16 chr1 188910656 188910969 -53753384 - AluSx SINE Alu -4 308 1 22 70 0 0 chr1 188911206 188911249 -53753104 + AT_rich Low_complexity Low_complexity 1 43 0 795 379 45 43 chr1 188912671 188912817 -53751536 + L2 LINE L2 84 228 -3086 1796 176 0 0 chr1 188912817 188913101 -53751252 - AluJb SINE Alu -27 285 2 795 379 45 43 chr1 188913101 188913458 -53750895 + L2 LINE L2 228 583 -2731 1786 148 40 50 chr1 188913458 188913837 -53750516 + THE1C LTR MaLR 1 375 0 9285 138 21 34 chr1 188913839 188915438 -53748915 + THE1C-int LTR MaLR 3 1580 0 1778 133 102 40 chr1 188915438 188915621 -53748732 + THE1C LTR MaLR 1 171 -204 234 0 0 0 chr1 188915621 188915647 -53748706 + (TC)n Simple_repeat Simple_repeat 1 26 0 1778 133 102 40 chr1 188915647 188915815 -53748538 + THE1C LTR MaLR 171 374 -1 795 379 45 43 chr1 188915815 188916448 -53747905 + L2 LINE L2 582 1228 -2086 5702 161 21 15 chr1 188916688 188918163 -53746190 - L1PA16 LINE L1 0 6166 4698 239 293 86 57 chr1 188918532 188918672 -53745681 + L3 LINE CR1 354 497 -1080 1974 151 16 3 chr1 188918921 188919266 -53745087 - AluSx SINE Alu 0 351 3 2712 176 14 71 chr1 188919438 188919737 -53744616 - L1MA9 LINE L1 0 6312 6014 406 256 14 143 chr1 188919737 188920002 -53744351 - L1ME1 LINE L1 -166 6000 5805 1722 161 31 0 chr1 188920002 188920293 -53744060 - AluJo SINE Alu -2 310 11 406 256 14 143 chr1 188920293 188920441 -53743912 - L1ME1 LINE L1 -361 5805 5640 1653 198 7 0 chr1 188920463 188920746 -53743607 + AluJo SINE Alu 11 295 -17 1509 154 18 0 chr1 188921052 188921325 -53743028 + L1MB1 LINE L1 5888 6165 -3 244 240 38 55 chr1 188921378 188921561 -53742792 + (TA)n Simple_repeat Simple_repeat 1 180 0 280 382 71 42 chr1 188921628 188921866 -53742487 - L2 LINE L2 -213 3059 2815 255 175 0 0 chr1 188922262 188922319 -53742034 + GA-rich Low_complexity Low_complexity 1 57 0 557 278 90 40 chr1 188922840 188923420 -53740933 - L1M4 LINE L1 -2962 3184 2576 22 0 0 0 chr1 188923431 188923453 -53740900 + AT_rich Low_complexity Low_complexity 1 22 0 1360 185 15 82 chr1 188923695 188924036 -53740317 - L1MB3 LINE L1 -9 6174 5857 863 198 15 38 chr1 188924034 188924156 -53740197 - L1MB3 LINE L1 -730 5450 5327 * 2028 126 0 0 chr1 188924156 188924462 -53739891 - AluSp SINE Alu 0 306 1 863 198 15 38 chr1 188924462 188924620 -53739733 - L1MB3 LINE L1 -853 5327 5173 232 234 16 16 chr1 188925210 188925274 -53739079 + GA-rich Low_complexity Low_complexity 2 65 0 345 314 56 70 chr1 188925277 188925564 -53738789 + L1ME4a LINE L1 5734 6016 -105 183 261 14 0 chr1 188926515 188926584 -53737769 + L2 LINE L2 1296 1365 -1949 210 295 150 62 chr1 188926651 188926852 -53737501 + L2 LINE L2 1528 1710 -1604 2233 121 13 0 chr1 188926852 188927159 -53737194 - AluSx SINE Alu 0 312 2 210 295 150 62 chr1 188927159 188927343 -53737010 + L2 LINE L2 1710 1947 -1367 287 350 130 0 chr1 188927367 188927567 -53736786 + L2 LINE L2 2060 2285 -1029 1340 274 73 17 chr1 188927569 188927981 -53736372 - LTR16A LTR ERVL 0 450 16 697 107 0 49 chr1 188928015 188928137 -53736216 + AluSg/x SINE Alu 190 305 -5 557 327 109 49 chr1 188928138 188928753 -53735600 + L2 LINE L2 2288 2939 -375 338 328 8 34 chr1 188928917 188929036 -53735317 + L2 LINE L2 3171 3286 -27 345 272 26 18 chr1 188929322 188929436 -53734917 + Charlie8 DNA MER1_type 151 265 -2152 219 288 15 15 chr1 188929572 188929638 -53734715 + L2 LINE L2 3201 3266 -6 22 0 0 0 chr1 188929681 188929703 -53734650 + AT_rich Low_complexity Low_complexity 1 22 0 1699 106 4 47 chr1 188930269 188930573 -53733780 + AluSx SINE Alu 40 332 0 2251 164 0 18 chr1 188933434 188933818 -53730535 - MER44D DNA MER2_type 0 605 357 820 246 36 0 chr1 188933810 188933977 -53730376 - MER44D DNA MER2_type -522 183 11 * 258 309 96 11 chr1 188933993 188934087 -53730266 - L2 LINE L2 -5 3308 3207 24 0 0 0 chr1 188934158 188934182 -53730171 + AT_rich Low_complexity Low_complexity 1 24 0 2082 105 7 7 chr1 188934369 188934665 -53729688 + AluSx SINE Alu 1 296 -16 486 240 104 116 chr1 188935275 188935807 -53728546 + L1MEd LINE L1 753 1229 -4890 406 73 0 0 chr1 188935810 188935865 -53728488 - L1P3 LINE L1 -6397 64 10 210 37 0 0 chr1 188935875 188935902 -53728451 + (TA)n Simple_repeat Simple_repeat 2 28 0 246 62 0 0 chr1 188935902 188935934 -53728419 + (GA)n Simple_repeat Simple_repeat 1 32 0 694 267 10 10 chr1 188935970 188936172 -53728181 + L1P LINE L1 255 456 -5690 22108 76 30 0 chr1 188936175 188939964 -53724389 + L1PA6 LINE L1 2323 6138 -16 210 71 0 0 chr1 188939964 188939992 -53724361 + (TA)n Simple_repeat Simple_repeat 1 28 0 2885 277 102 29 chr1 188940093 188942054 -53722299 + L1MEd LINE L1 2094 4199 -1930 183 246 18 35 chr1 188942055 188942112 -53722241 + L2 LINE L2 2914 2969 -303 1564 151 93 0 chr1 188942774 188943032 -53721321 - AluJb SINE Alu -30 282 1 2697 94 1 13 chr1 188943579 188944037 -53720316 - L1P LINE L1 -712 5419 4967 1555 104 0 0 chr1 188944035 188944247 -53720106 + L1PA8A LINE L1 5430 5641 -490 * 613 98 0 0 chr1 188944251 188944343 -53720010 + L1PA8 LINE L1 6081 6172 0 796 247 42 140 chr1 188944986 188945095 -53719258 - L2 LINE L2 -74 3239 3121 2700 91 6 0 chr1 188945095 188945457 -53718896 + THE1B LTR MaLR 1 364 0 796 247 42 140 chr1 188945457 188945804 -53718549 - L2 LINE L2 -192 3121 2828 28 0 0 0 chr1 188946345 188946373 -53717980 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 188946397 188946425 -53717928 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr1 188946501 188946540 -53717813 + AT_rich Low_complexity Low_complexity 1 39 0 334 263 123 18 chr1 188946610 188946937 -53717416 + L1ME4a LINE L1 5521 5894 -227 636 89 30 0 chr1 188947274 188947375 -53716978 + L1MB4 LINE L1 6077 6180 0 26 50 0 0 chr1 188949316 188949356 -53714997 + AT_rich Low_complexity Low_complexity 1 40 0 2249 238 45 17 chr1 188949382 188949957 -53714396 + MLT1E LTR MaLR 3 593 0 376 264 146 22 chr1 188949959 188950137 -53714216 - MIR SINE MIR -50 212 13 1725 231 87 35 chr1 188950143 188950601 -53713752 - MLT1D LTR MaLR -3 502 21 1896 122 0 7 chr1 188950781 188951051 -53713302 + AluSx SINE Alu 33 300 -12 205 321 161 0 chr1 188951632 188951713 -53712640 - L3 LINE CR1 -92 1485 1392 29 47 0 0 chr1 188951926 188951969 -53712384 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr1 188952047 188952077 -53712276 + AT_rich Low_complexity Low_complexity 1 30 0 34 24 0 0 chr1 188952896 188952937 -53711416 + AT_rich Low_complexity Low_complexity 1 41 0 1305 201 37 20 chr1 188955144 188955438 -53708915 - AluJo SINE Alu -13 299 1 630 200 18 23 chr1 188955439 188955717 -53708636 - MER33 DNA MER1_type -2 322 1 1950 263 132 4 chr1 188955790 188956557 -53707796 + L1ME3A LINE L1 5297 6161 -9 253 274 52 37 chr1 188957230 188957365 -53706988 + L1M3 LINE L1 5374 5510 -661 506 194 31 16 chr1 188958332 188958461 -53705892 - MER94 DNA DNA 0 134 4 30 45 0 0 chr1 188958827 188958871 -53705482 + AT_rich Low_complexity Low_complexity 1 44 0 374 234 32 48 chr1 188959614 188959738 -53704615 - L2 LINE L2 -3 3310 3189 14676 162 67 14 chr1 188959766 188960803 -53703550 + L1PB1 LINE L1 3 984 -5883 4965 77 38 3 chr1 188960803 188961468 -53702885 - LTR12 LTR ERV1 0 688 1 14676 162 67 14 chr1 188961468 188962472 -53701881 + L1PB1 LINE L1 984 1933 -4934 2002 121 3 39 chr1 188962472 188962778 -53701575 + AluSc SINE Alu 1 295 -14 2034 122 7 0 chr1 188962787 188963085 -53701268 + AluSc SINE Alu 1 300 0 14676 162 67 14 chr1 188963085 188963487 -53700866 + L1PB1 LINE L1 1940 2319 -4548 188 83 0 28 chr1 188963487 188963523 -53700830 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 14676 162 67 14 chr1 188963523 188964030 -53700323 + L1PB1 LINE L1 2319 2798 -4069 189 0 0 0 chr1 188964030 188964051 -53700302 + (CAA)n Simple_repeat Simple_repeat 1 21 0 14676 162 67 14 chr1 188964051 188964838 -53699515 + L1PB1 LINE L1 2798 3542 -3325 2348 72 0 28 chr1 188964838 188965158 -53699195 + AluY SINE Alu 1 311 0 14676 162 67 14 chr1 188965158 188967924 -53696429 + L1PB1 LINE L1 3542 6865 -2 971 229 133 30 chr1 188967986 188968383 -53695970 - L1ME3A LINE L1 -6 6164 5727 3284 196 101 9 chr1 188968514 188968809 -53695544 - L1MB1 LINE L1 -117 6072 5806 15104 149 35 15 chr1 188968809 188971472 -53692881 - Tigger2 DNA MER2_type -1 2717 1 3284 196 101 9 chr1 188971472 188971926 -53692427 - L1MB1 LINE L1 -383 5806 5254 926 210 5 15 chr1 188971930 188972130 -53692223 + MSTD LTR MaLR 1 198 -198 1836 181 14 140 chr1 188972131 188972148 -53692205 + MLT2B3 LTR ERVL 3 21 -533 2101 135 49 9 chr1 188972148 188972496 -53691857 + THE1B LTR MaLR 1 362 -2 10564 109 21 22 chr1 188972498 188974080 -53690273 + THE1B-int LTR MaLR 1 1580 0 1891 151 57 17 chr1 188974080 188974430 -53689923 + THE1B LTR MaLR 1 364 0 1836 181 14 140 chr1 188974430 188975042 -53689311 + MLT2B3 LTR ERVL 20 554 0 2618 99 3 0 chr1 188975042 188975407 -53688946 + HERVL-B3 LTR ERVL 1 366 -5288 965 339 171 25 chr1 188976275 188977308 -53687045 + L2 LINE L2 315 1498 -1816 1773 230 24 5 chr1 188977308 188977726 -53686627 + L1ME1 LINE L1 5732 6157 -9 267 177 63 0 chr1 188978042 188978121 -53686232 + GA-rich Low_complexity Low_complexity 2 85 0 24 0 0 0 chr1 188978319 188978343 -53686010 + AT_rich Low_complexity Low_complexity 1 24 0 322 253 36 12 chr1 188978493 188978576 -53685777 + L2 LINE L2 3229 3313 0 2263 86 0 13 chr1 188978888 188979190 -53685163 - AluY SINE Alu -13 298 1 501 271 99 59 chr1 188979375 188979678 -53684675 + L2 LINE L2 2483 2797 -517 617 265 147 0 chr1 188980866 188981036 -53683317 - MIR SINE MIR -56 206 12 513 336 87 17 chr1 188981267 188981508 -53682845 + MIR SINE MIR 5 262 0 708 261 40 43 chr1 188983211 188983533 -53680820 + L1ME LINE L1 5260 5580 -582 1090 131 12 0 chr1 188985508 188985676 -53678677 - Tigger1 DNA MER2_type -2248 170 1 25 0 0 0 chr1 188985807 188985832 -53678521 + AT_rich Low_complexity Low_complexity 1 25 0 2012 135 17 3 chr1 188986766 188987121 -53677232 - L1MA4 LINE L1 0 6300 5941 24 32 0 0 chr1 188987578 188987609 -53676744 + AT_rich Low_complexity Low_complexity 1 31 0 2549 97 16 8 chr1 188987987 188988367 -53675986 + LTR15 LTR ERV1 105 487 -6 294 167 0 0 chr1 188988835 188988895 -53675458 + (TA)n Simple_repeat Simple_repeat 1 60 0 206 136 23 0 chr1 188989066 188989110 -53675243 + (TA)n Simple_repeat Simple_repeat 1 45 0 562 201 132 13 chr1 188989136 188989295 -53675058 + MER5B DNA MER1_type 1 178 0 799 336 144 34 chr1 188989419 188990596 -53673757 + L2 LINE L2 1916 3267 -5 314 322 86 7 chr1 188990686 188990838 -53673515 + MIR SINE MIR 37 200 -62 292 213 231 19 chr1 188991091 188991199 -53673154 - MER94 DNA DNA 0 134 4 22 0 0 0 chr1 188991281 188991303 -53673050 + AT_rich Low_complexity Low_complexity 1 22 0 184 306 129 16 chr1 188997764 188997888 -53666465 - MIR SINE MIR -51 211 74 1159 249 42 59 chr1 188998379 188998856 -53665497 + L1MDb LINE L1 788 1256 -5153 713 255 71 11 chr1 188998856 188999040 -53665313 - MER58A DNA MER1_type -29 195 1 2640 240 135 37 chr1 188999040 188999731 -53664622 + L1MDb LINE L1 2973 3595 -2811 1996 157 0 0 chr1 188999731 189000036 -53664317 + AluJo SINE Alu 1 305 -7 2640 240 135 37 chr1 189000036 189000047 -53664306 + L1MDb LINE L1 3595 3604 -2802 679 133 44 0 chr1 189000047 189000160 -53664193 + L1MA5A LINE L1 6177 6294 -3 2640 240 135 37 chr1 189000160 189001511 -53662842 + L1MDb LINE L1 3604 5302 -1104 489 242 45 6 chr1 189001514 189001671 -53662682 + L1MDb LINE L1 5351 5513 -893 228 240 67 0 chr1 189001711 189001786 -53662567 + L1ME3A LINE L1 4765 4844 -1302 5592 123 27 4 chr1 189001804 189003518 -53660835 + L1PA13 LINE L1 4796 6114 -47 501 175 21 10 chr1 189003518 189003615 -53660738 + MER4A LTR ERV1 1 98 -566 1592 145 19 78 chr1 189003615 189003980 -53660373 + MER4A LTR ERV1 263 664 0 295 68 0 0 chr1 189003980 189004024 -53660329 + L1PA15 LINE L1 6111 6154 -11 1951 186 34 5 chr1 189004033 189004420 -53659933 + L1PA16 LINE L1 5769 6166 0 293 285 94 55 chr1 189004441 189004697 -53659656 + L1ME3A LINE L1 4865 5130 -1016 588 268 53 8 chr1 189004815 189005071 -53659282 + L1ME3A LINE L1 5320 5588 -576 10667 133 31 7 chr1 189005081 189005617 -53658736 - Tigger1 DNA MER2_type 0 2418 1896 1571 184 17 27 chr1 189005617 189005781 -53658572 - AluJo SINE Alu -22 290 129 2109 131 0 3 chr1 189005781 189006087 -53658266 - AluSx SINE Alu -7 305 1 1571 184 17 27 chr1 189006087 189006215 -53658138 - AluJo SINE Alu -183 129 1 10667 133 31 7 chr1 189006215 189007384 -53656969 - Tigger1 DNA MER2_type -522 1896 672 1367 145 22 0 chr1 189007384 189007612 -53656741 - Tigger1 DNA MER2_type -2184 234 2 671 271 124 51 chr1 189007624 189008133 -53656220 + L1ME3A LINE L1 5625 6170 0 28 29 0 0 chr1 189008283 189008318 -53656035 + AT_rich Low_complexity Low_complexity 1 35 0 428 233 203 50 chr1 189009675 189009877 -53654476 - MIR SINE MIR -29 233 1 1764 185 3 0 chr1 189011286 189011583 -53652770 + AluSx SINE Alu 1 298 -14 854 283 28 12 chr1 189013698 189013949 -53650404 + MLT1C LTR MaLR 208 462 -5 1685 231 62 8 chr1 189013980 189014514 -53649839 + MER82 DNA MER2_type 58 652 -1 323 261 169 15 chr1 189015652 189015726 -53648627 + MIR SINE MIR 113 174 -88 306 73 0 0 chr1 189015726 189015767 -53648586 + (TA)n Simple_repeat Simple_repeat 1 41 0 323 261 169 15 chr1 189015767 189015822 -53648531 + MIR SINE MIR 174 262 0 224 213 16 33 chr1 189016500 189016561 -53647792 + GA-rich Low_complexity Low_complexity 5 64 0 401 262 9 56 chr1 189016657 189016764 -53647589 - MIR SINE MIR -73 135 34 183 100 0 0 chr1 189016774 189016804 -53647549 + (TA)n Simple_repeat Simple_repeat 1 30 0 2230 113 3 0 chr1 189017196 189017505 -53646848 + AluSx SINE Alu 1 310 -2 440 321 151 36 chr1 189017877 189018182 -53646171 - L3 LINE CR1 -70 1507 1168 269 316 114 9 chr1 189018748 189018862 -53645491 + MIR SINE MIR 32 157 -105 2297 75 3 0 chr1 189018921 189019215 -53645138 + AluY SINE Alu 1 295 -16 27 62 0 0 chr1 189019848 189019896 -53644457 + AT_rich Low_complexity Low_complexity 1 48 0 476 224 67 37 chr1 189020543 189020677 -53643676 - MIR SINE MIR -28 234 97 379 328 156 22 chr1 189020685 189020999 -53643354 - L2 LINE L2 -6 3307 2952 357 341 35 52 chr1 189021952 189022125 -53642228 + MLT1I LTR MaLR 98 267 -142 232 276 11 46 chr1 189022206 189022293 -53642060 + MIR SINE MIR 57 140 -122 2045 100 3 23 chr1 189022655 189022955 -53641398 - AluY SINE Alu -17 294 1 279 269 83 9 chr1 189022956 189023064 -53641289 + MIR SINE MIR 93 208 -54 25 0 0 0 chr1 189023335 189023360 -53640993 + AT_rich Low_complexity Low_complexity 1 25 0 3228 134 25 91 chr1 189023685 189024378 -53639975 + L1MA9 LINE L1 5661 6307 -5 565 286 39 0 chr1 189024827 189024981 -53639372 + L2 LINE L2 2495 2654 -660 744 304 84 39 chr1 189025169 189025213 -53639140 - L3 LINE CR1 -34 1543 1502 1402 211 0 44 chr1 189025213 189025531 -53638822 + AluJo SINE Alu 1 304 -8 744 304 84 39 chr1 189025531 189025867 -53638486 - L3 LINE CR1 -75 1502 1146 526 202 39 0 chr1 189026600 189026729 -53637624 - L1MA4 LINE L1 -2 6298 6165 490 92 13 0 chr1 189026743 189026819 -53637534 - L1P4 LINE L1 -483 5683 5607 1342 194 0 8 chr1 189026819 189027067 -53637286 + AluSx SINE Alu 54 299 -13 1737 197 30 26 chr1 189027067 189027832 -53636521 + L1M4c LINE L1 1454 2313 -4071 318 231 130 37 chr1 189028377 189028485 -53635868 - L2 LINE L2 -1 3312 3195 1565 182 4 0 chr1 189028609 189028878 -53635475 - AluSx SINE Alu -42 270 1 308 333 17 17 chr1 189029286 189029403 -53634950 - L2 LINE L2 0 3272 3156 1552 185 18 0 chr1 189029405 189029691 -53634662 - AluSq SINE Alu -18 295 5 966 102 12 18 chr1 189030412 189030578 -53633775 + AluY SINE Alu 1 165 -146 519 172 78 8 chr1 189030578 189030706 -53633647 - L1MA4 LINE L1 -117 6183 6047 295 303 83 18 chr1 189031204 189031313 -53633040 - L2 LINE L2 -8 3264 3149 627 278 80 14 chr1 189031532 189031744 -53632609 - MIR SINE MIR -27 235 10 205 337 148 35 chr1 189031757 189031926 -53632427 - L2 LINE L2 -563 2751 2564 1407 218 30 24 chr1 189032183 189032522 -53631831 + MER58B DNA MER1_type 1 341 0 242 295 57 48 chr1 189032803 189032908 -53631445 + L2 LINE L2 3148 3253 -19 182 167 0 24 chr1 189033108 189033150 -53631203 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 569 242 163 14 chr1 189035641 189035856 -53628497 - MIR SINE MIR -7 255 9 248 91 23 0 chr1 189036943 189036987 -53627366 + (TA)n Simple_repeat Simple_repeat 2 46 0 304 351 54 50 chr1 189037433 189037655 -53626698 + L1MDb LINE L1 527 749 -5660 26 0 0 0 chr1 189088216 189088242 -53576111 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr1 189088681 189088720 -53575633 + AT_rich Low_complexity Low_complexity 1 39 0 1755 144 54 41 chr1 189089904 189090272 -53574081 + THE1C LTR MaLR 1 373 -2 21 0 0 0 chr1 189090674 189090695 -53573658 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 189091003 189091026 -53573327 + AT_rich Low_complexity Low_complexity 1 23 0 314 179 145 34 chr1 189091408 189091525 -53572828 + L2 LINE L2 1602 1731 -1583 6496 140 57 14 chr1 189092014 189093194 -53571159 + Tigger3b DNA MER2_type 1 1231 0 358 275 53 53 chr1 189093422 189093593 -53570760 - HAL1 LINE L1 -2329 178 8 192 358 15 0 chr1 189094776 189094843 -53569510 - L2 LINE L2 0 3313 3246 259 81 0 0 chr1 189095188 189095225 -53569128 - AluJ/F(R)AM SINE Alu -99 212 176 849 152 14 0 chr1 189095228 189095366 -53568987 - FLAM_C SINE Alu -3 140 1 495 213 69 139 chr1 189095541 189095743 -53568610 + MER5A DNA MER1_type 1 188 -1 253 268 24 0 chr1 189095809 189095891 -53568462 + (TA)n Simple_repeat Simple_repeat 1 84 0 446 279 140 11 chr1 189096047 189096226 -53568127 - MIR SINE MIR -32 230 29 229 192 0 123 chr1 189096435 189096508 -53567845 + L2 LINE L2 3202 3265 -7 247 306 96 70 chr1 189096620 189096819 -53567534 - L3 LINE CR1 0 1577 1374 1261 306 145 48 chr1 189097104 189097586 -53566767 - L3 LINE CR1 -237 1340 906 2180 98 3 0 chr1 189097586 189097905 -53566448 - AluSp SINE Alu 0 320 1 1261 306 145 48 chr1 189097905 189098270 -53566083 - L3 LINE CR1 -671 906 409 4927 158 109 59 chr1 189098546 189099371 -53564982 + L1MC1 LINE L1 4404 5186 -1147 2268 106 0 6 chr1 189099371 189099682 -53564671 + AluSx SINE Alu 1 309 -3 4927 158 109 59 chr1 189099682 189100147 -53564206 + L1MC1 LINE L1 5186 5626 -707 1236 199 87 22 chr1 189100147 189100469 -53563884 + MER2 DNA MER2_type 2 344 0 4927 158 109 59 chr1 189100469 189100991 -53563362 + L1MC1 LINE L1 5626 6332 -1 339 260 14 96 chr1 189101709 189101855 -53562498 - MIR SINE MIR -7 255 122 2061 126 0 13 chr1 189102061 189102362 -53561991 + AluSx SINE Alu 1 297 -15 1041 283 33 82 chr1 189102397 189102746 -53561607 + MLT1H1 LTR MaLR 5 317 -238 2113 125 0 7 chr1 189102746 189103042 -53561311 - AluSx SINE Alu -18 294 1 1041 283 33 82 chr1 189103042 189103269 -53561084 + MLT1H1 LTR MaLR 317 553 -2 24 53 0 0 chr1 189103425 189103463 -53560890 + AT_rich Low_complexity Low_complexity 1 38 0 24 77 0 0 chr1 189103894 189103946 -53560407 + AT_rich Low_complexity Low_complexity 1 52 0 2090 138 10 0 chr1 189104001 189104306 -53560047 + AluJo SINE Alu 3 310 -2 24 32 0 0 chr1 189104722 189104753 -53559600 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr1 189105032 189105068 -53559285 + AT_rich Low_complexity Low_complexity 1 36 0 734 254 62 27 chr1 189105127 189105351 -53559002 + MIR SINE MIR 31 262 0 27 49 0 0 chr1 189105678 189105719 -53558634 + AT_rich Low_complexity Low_complexity 1 41 0 213 197 79 66 chr1 189106001 189106077 -53558276 + MIR SINE MIR 153 229 -33 842 132 16 0 chr1 189106077 189106206 -53558147 + AluSq/x SINE Alu 1 131 -181 183 231 26 0 chr1 189106234 189106273 -53558080 + MIR SINE MIR 222 261 -1 2161 85 17 3 chr1 189106842 189107137 -53557216 - AluSq SINE Alu -12 301 3 21 57 0 0 chr1 189107591 189107626 -53556727 + AT_rich Low_complexity Low_complexity 1 35 0 231 36 0 0 chr1 189107804 189107832 -53556521 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 269 298 113 83 chr1 189109200 189109741 -53554612 + L2 LINE L2 2489 3062 -251 452 195 6 145 chr1 189109912 189110071 -53554282 - MIR SINE MIR -40 222 86 462 101 0 0 chr1 189110483 189110552 -53553801 + (GGGA)n Simple_repeat Simple_repeat 2 70 0 294 206 16 0 chr1 189110670 189110733 -53553620 + MER103 DNA DNA 9 72 -94 26 0 0 0 chr1 189111162 189111188 -53553165 + AT_rich Low_complexity Low_complexity 1 26 0 421 160 250 20 chr1 189114109 189114173 -53550180 + MLT2B3 LTR ERVL 424 472 -82 366 23 0 0 chr1 189114173 189114216 -53550137 + (CA)n Simple_repeat Simple_repeat 2 44 0 421 160 250 20 chr1 189114216 189114251 -53550102 + MLT2B3 LTR ERVL 472 546 -8 704 12 0 0 chr1 189114328 189114413 -53549940 - L1PA2 LINE L1 0 6155 6071 1112 276 93 42 chr1 189114583 189115057 -53549296 - L2 LINE L2 -946 2368 1871 339 111 28 14 chr1 189115108 189115180 -53549173 + (TA)n Simple_repeat Simple_repeat 1 73 0 209 167 42 0 chr1 189115211 189115259 -53549094 - L2 LINE L2 -1641 1673 1624 2226 171 120 10 chr1 189118074 189118490 -53545863 + MLT2B2 LTR ERVL 1 462 -53 973 253 122 8 chr1 189118495 189118843 -53545510 + MLT1F LTR MaLR 97 567 0 562 354 5 5 chr1 189118882 189119094 -53545259 + ERVL LTR ERVL 4076 4287 -1477 598 310 52 60 chr1 189119155 189119539 -53544814 + ERVL LTR ERVL 4550 4930 -834 546 312 75 32 chr1 189119716 189120024 -53544329 + MLT1H LTR MaLR 229 549 0 3625 244 39 42 chr1 189120438 189120449 -53543904 - L1MDa LINE L1 -1968 4572 4562 2168 121 0 13 chr1 189120449 189120762 -53543591 - AluSg SINE Alu -1 309 1 3625 244 39 42 chr1 189120762 189121493 -53542860 - L1MDa LINE L1 -1978 4562 3833 1515 196 116 12 chr1 189121493 189121820 -53542533 - MLT1A1 LTR MaLR -2 363 3 3625 244 39 42 chr1 189121820 189122488 -53541865 - L1MDa LINE L1 -2707 3833 3165 2088 124 7 0 chr1 189122829 189123119 -53541234 + AluSp SINE Alu 3 294 -19 2294 215 74 56 chr1 189123346 189124508 -53539845 - L1MDa LINE L1 -3363 3177 1983 * 5847 65 30 0 chr1 189124486 189125258 -53539095 - L1PA7 LINE L1 -2 6546 5752 194 304 58 14 chr1 189126004 189126073 -53538280 - MER5A DNA MER1_type -98 91 20 726 276 85 34 chr1 189126872 189126997 -53537356 + L1ME1 LINE L1 3632 3749 -2397 300 27 0 0 chr1 189126997 189127034 -53537319 + (TG)n Simple_repeat Simple_repeat 1 37 0 726 276 85 34 chr1 189127034 189127357 -53536996 + L1ME1 LINE L1 3749 4114 -2032 2117 99 10 20 chr1 189127357 189127659 -53536694 - AluSx SINE Alu -13 299 1 726 276 85 34 chr1 189127659 189127741 -53536612 + L1ME1 LINE L1 4114 4190 -1956 6117 84 16 0 chr1 189127836 189129005 -53535348 - L1PB1 LINE L1 -1 6866 5673 15874 155 79 6 chr1 189129005 189133348 -53531005 - L1PB1 LINE L1 -1707 5155 428 2005 125 0 10 chr1 189133348 189133682 -53530671 - AluSx SINE Alu 0 331 1 15874 155 79 6 chr1 189133682 189134142 -53530211 - L1PB1 LINE L1 -6434 428 3 2235 162 30 30 chr1 189134226 189134690 -53529663 + MLT2C2 LTR ERVL 1 464 0 186 196 0 22 chr1 189134981 189135027 -53529326 - L2 LINE L2 -1 3312 3268 1105 179 93 88 chr1 189135381 189135733 -53528620 - MLT1A1 LTR MaLR -3 362 4 2298 244 71 37 chr1 189135733 189136765 -53527588 + L1ME1 LINE L1 4511 6122 -44 458 215 146 14 chr1 189136667 189136811 -53527542 + L1MA10 LINE L1 6169 6331 -3 * 404 336 57 26 chr1 189136831 189137096 -53527257 + L1 LINE L1 4786 5058 -1088 2034 216 43 49 chr1 189137633 189138285 -53526068 + L1MB7 LINE L1 2703 3350 -2796 454 147 0 27 chr1 189138285 189138360 -53525993 + Tigger2 DNA MER2_type 1 73 -2645 897 226 0 11 chr1 189138394 189138571 -53525782 - MER8 DNA MER2_type -63 176 2 2785 184 40 22 chr1 189138572 189139219 -53525134 + L1MB7 LINE L1 3349 4007 -2139 2124 131 3 24 chr1 189139219 189139310 -53525043 + THE1C LTR MaLR 1 92 -283 2265 97 7 0 chr1 189139310 189139609 -53524744 - AluSp SINE Alu -11 302 2 2124 131 3 24 chr1 189139609 189139853 -53524500 + THE1C LTR MaLR 92 329 -46 351 355 50 83 chr1 189140069 189140466 -53523887 + L2 LINE L2 2888 3271 -1 3908 176 96 6 chr1 189140956 189141867 -53522486 + L1MB7 LINE L1 5175 6164 -20 331 215 13 0 chr1 189141985 189142064 -53522289 + L1ME4a LINE L1 5969 6048 -73 462 323 129 42 chr1 189142697 189143124 -53521229 - L2 LINE L2 -2718 596 133 286 308 22 0 chr1 189143285 189143376 -53520977 - MIR SINE MIR -14 248 156 367 235 181 20 chr1 189143377 189143526 -53520827 + MIR SINE MIR 66 238 -24 322 269 83 46 chr1 189143574 189143682 -53520671 - MIR SINE MIR -106 156 45 233 322 114 50 chr1 189143685 189143887 -53520466 + L2 LINE L2 2717 2931 -383 307 257 87 71 chr1 189144189 189144442 -53519911 + L1M2 LINE L1 1763 2019 -4830 1799 112 242 9 chr1 189144691 189145038 -53519315 + MSTA LTR MaLR 1 428 0 30 27 0 0 chr1 189146084 189146121 -53518232 + AT_rich Low_complexity Low_complexity 1 37 0 579 287 118 30 chr1 189149015 189149252 -53515101 - MIR SINE MIR 0 262 5 823 260 39 48 chr1 189149445 189149757 -53514596 + MLT1J LTR MaLR 1 309 -202 1692 170 3 29 chr1 189149928 189150239 -53514114 - AluSx SINE Alu -5 307 5 734 206 0 47 chr1 189150517 189150687 -53513666 + MLT1A2 LTR MaLR 1 162 -212 2146 137 18 9 chr1 189150761 189151104 -53513249 - THE1A LTR MaLR -9 346 1 2366 176 43 74 chr1 189151104 189151411 -53512942 - THE1A-int LTR MaLR 0 1580 1403 449 83 28 0 chr1 189151411 189151483 -53512870 - Alu SINE Alu -3 307 234 2366 176 43 74 chr1 189151483 189151733 -53512620 - THE1A-int LTR MaLR -177 1403 1147 1799 112 242 9 chr1 189151891 189152238 -53512115 + MSTA LTR MaLR 1 428 0 207 305 9 38 chr1 189152658 189152763 -53511590 + CT-rich Low_complexity Low_complexity 3 104 0 7271 89 16 2 chr1 189153097 189154089 -53510264 - THE1A-int LTR MaLR -546 1034 29 558 228 24 27 chr1 189154089 189154117 -53510236 + MLT1A2 LTR MaLR 239 266 -108 2225 130 11 8 chr1 189154117 189154471 -53509882 - THE1A LTR MaLR 0 355 1 558 228 24 27 chr1 189154471 189154614 -53509739 + MLT1A2 LTR MaLR 266 374 0 21 0 0 0 chr1 189154816 189154837 -53509516 + AT_rich Low_complexity Low_complexity 1 21 0 1854 135 30 0 chr1 189154840 189155136 -53509217 - L1PA16 LINE L1 -9 6157 5853 592 276 108 0 chr1 189155363 189155566 -53508787 - MIR SINE MIR 0 262 38 455 329 67 36 chr1 189156180 189156405 -53507948 + MIR SINE MIR 21 252 -10 1268 281 63 18 chr1 189156787 189157228 -53507125 + HERV16 LTR ERVL 894 1354 -3642 1016 180 9 51 chr1 189157232 189157449 -53506904 + MLT1D LTR MaLR 1 208 -297 22567 154 32 19 chr1 189157550 189161624 -53502729 - L1MDa LINE L1 -782 5758 1736 1423 56 0 0 chr1 189161624 189161804 -53502549 - L1PA4 LINE L1 -3 6152 5973 22567 154 32 19 chr1 189161804 189161911 -53502442 - L1MDa LINE L1 -4804 1736 1632 923 218 0 0 chr1 189161911 189162081 -53502272 + FAM SINE Alu 1 170 -5 22567 154 32 19 chr1 189162081 189163193 -53501160 - L1MDa LINE L1 -4908 1632 18 1191 204 30 4 chr1 189163195 189163459 -53500894 + MER58B DNA MER1_type 71 341 0 273 229 264 36 chr1 189164856 189164996 -53499357 + MIR SINE MIR 3 174 -88 345 301 64 23 chr1 189165689 189165908 -53498445 - L1MC4a LINE L1 -1897 5911 5684 332 325 41 26 chr1 189166609 189166803 -53497550 - L1MC4a LINE L1 -991 5155 4959 312 27 0 0 chr1 189167078 189167115 -53497238 + (CATTA)n Simple_repeat Simple_repeat 3 39 0 694 262 162 18 chr1 189167649 189167878 -53496475 + MIR SINE MIR 1 262 0 23 0 0 0 chr1 189168026 189168049 -53496304 + AT_rich Low_complexity Low_complexity 1 23 0 1255 166 126 22 chr1 189168628 189168899 -53495454 - MER58B DNA MER1_type -1 340 42 405 0 0 0 chr1 189169099 189169144 -53495209 + (TA)n Simple_repeat Simple_repeat 2 46 0 2069 162 30 3 chr1 189169262 189169601 -53494752 - MLT2B2 LTR ERVL -167 348 1 841 83 0 8 chr1 189170219 189170351 -53494002 + L1MA2 LINE L1 6049 6179 -125 486 319 124 19 chr1 189170351 189170812 -53493541 + L2 LINE L2 1566 2074 -1240 456 331 67 0 chr1 189170884 189171062 -53493291 + MIR SINE MIR 72 261 -1 4915 94 4 1 chr1 189171168 189171852 -53492501 + L1PA10 LINE L1 5482 6167 -1 1304 160 51 51 chr1 189172018 189172311 -53492042 + AluJo SINE Alu 1 293 -19 300 154 0 0 chr1 189172318 189172370 -53491983 + GA-rich Low_complexity Low_complexity 3 54 0 22 35 0 0 chr1 189172403 189172432 -53491921 + AT_rich Low_complexity Low_complexity 1 29 0 38 39 0 0 chr1 189172569 189172621 -53491732 + AT_rich Low_complexity Low_complexity 1 52 0 2264 98 0 0 chr1 189172850 189173145 -53491208 - AluSg SINE Alu -15 295 1 21 71 0 0 chr1 189173265 189173307 -53491046 + AT_rich Low_complexity Low_complexity 1 42 0 462 306 116 7 chr1 189173412 189173713 -53490640 + L1MC4a LINE L1 5641 5974 -1834 237 306 191 6 chr1 189173908 189174081 -53490272 + MIR SINE MIR 2 206 -56 194 369 44 38 chr1 189174384 189174544 -53489809 + L2 LINE L2 2261 2421 -893 5702 118 28 0 chr1 189174674 189175715 -53488638 - L1PA16 LINE L1 0 6166 5112 298 274 147 38 chr1 189175741 189176088 -53488265 - L1MEd LINE L1 -4869 1250 866 3476 155 23 5 chr1 189176131 189176749 -53487604 - L1PB4 LINE L1 -1 6155 5527 2213 92 0 35 chr1 189176758 189177075 -53487278 - AluSx SINE Alu -6 306 1 242 302 50 33 chr1 189177156 189177338 -53487015 - L1MEd LINE L1 -5295 824 640 633 188 6 23 chr1 189177415 189177591 -53486762 + CT-rich Low_complexity Low_complexity 4 176 0 525 329 40 9 chr1 189177917 189178142 -53486211 + L2 LINE L2 2555 2786 -528 1582 189 67 15 chr1 189178323 189178666 -53485687 - MLT1A1 LTR MaLR -4 361 1 259 406 48 18 chr1 189179199 189179364 -53484989 + MIR3 SINE MIR 33 202 -6 24 0 0 0 chr1 189179441 189179465 -53484888 + AT_rich Low_complexity Low_complexity 1 24 0 380 237 9 44 chr1 189182357 189182471 -53481882 - MIR SINE MIR -34 228 119 766 260 20 10 chr1 189182758 189182954 -53481399 - MIR SINE MIR -48 214 17 1560 199 20 13 chr1 189183071 189183377 -53480976 + AluJb SINE Alu 3 310 -2 2198 197 76 10 chr1 189184647 189185182 -53479171 + L1MC3 LINE L1 5711 6000 -166 * 7217 176 88 69 chr1 189185176 189185592 -53478761 - L1MC3 LINE L1 -184 7601 7194 242 309 21 21 chr1 189185592 189185686 -53478667 - MLT1F1 LTR MaLR -436 131 38 7217 176 88 69 chr1 189185686 189187018 -53477335 - L1MC3 LINE L1 -591 7194 5722 1632 193 82 25 chr1 189187018 189187458 -53476895 - MLT1C LTR MaLR -2 465 1 7217 176 88 69 chr1 189187458 189187476 -53476877 - L1MC3 LINE L1 -2063 5722 5706 185 216 0 0 chr1 189187551 189187588 -53476765 + L2 LINE L2 3273 3309 -4 29 60 0 0 chr1 189188490 189188540 -53475813 + AT_rich Low_complexity Low_complexity 1 50 0 824 272 259 30 chr1 189188540 189188934 -53475419 - L2 LINE L2 0 3313 2830 502 151 0 54 chr1 189189167 189189260 -53475093 - MER63 DNA MER1_type -310 751 664 221 356 47 27 chr1 189189272 189189421 -53474932 - L3b LINE CR1 -94 1489 1338 460 352 43 0 chr1 189189863 189190025 -53474328 + MIR3 SINE MIR 39 207 -1 875 287 25 38 chr1 189190103 189190228 -53474125 - MLT1I LTR MaLR -18 391 266 1570 189 16 55 chr1 189190228 189190608 -53473745 + MLT1A1 LTR MaLR 1 365 0 875 287 25 38 chr1 189190608 189190796 -53473557 - MLT1I LTR MaLR -143 266 82 21 89 0 0 chr1 189190883 189190939 -53473414 + AT_rich Low_complexity Low_complexity 1 56 0 185 243 43 57 chr1 189190958 189191028 -53473325 - L2 LINE L2 -9 3304 3236 210 158 0 0 chr1 189191665 189191703 -53472650 + T-rich Low_complexity Low_complexity 1 38 0 328 304 81 7 chr1 189192043 189192191 -53472162 - MIR SINE MIR -4 258 100 201 379 34 34 chr1 189193077 189193254 -53471099 - MER5A DNA MER1_type -11 178 2 382 384 101 12 chr1 189193680 189194104 -53470249 - L2 LINE L2 -610 2704 2243 22 35 0 0 chr1 189194173 189194202 -53470151 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr1 189194351 189194387 -53469966 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 189195257 189195281 -53469072 + AT_rich Low_complexity Low_complexity 1 24 0 2565 81 8 11 chr1 189195396 189195765 -53468588 - L1PB1 LINE L1 -1 6150 5783 46 45 0 0 chr1 189195949 189196016 -53468337 + AT_rich Low_complexity Low_complexity 1 67 0 355 241 89 9 chr1 189196153 189196265 -53468088 + MIR SINE MIR 71 191 -71 238 205 0 0 chr1 189196845 189196884 -53467469 + MIR SINE MIR 200 238 -24 213 296 74 25 chr1 189198520 189198601 -53465752 - MIR SINE MIR -90 118 34 2013 267 89 18 chr1 189199972 189201129 -53463224 + L1MEc LINE L1 40 1357 -5039 221 0 0 33 chr1 189201275 189201305 -53463048 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 326 303 109 8 chr1 189201501 189201620 -53462733 - HAL1 LINE L1 -1004 1503 1373 414 272 48 53 chr1 189201656 189202049 -53462304 - L1MEd LINE L1 -4869 1250 805 320 312 54 98 chr1 189202162 189202415 -53461938 - L1MEd LINE L1 -5326 793 553 360 0 0 0 chr1 189202415 189202455 -53461898 + (TG)n Simple_repeat Simple_repeat 2 41 0 320 312 54 98 chr1 189202455 189202496 -53461857 - L1MEd LINE L1 -5566 553 512 385 296 74 6 chr1 189202774 189202936 -53461417 - L1MEd LINE L1 -5943 176 4 18867 53 14 3 chr1 189204023 189207216 -53457137 + L1PA5 LINE L1 2945 6153 -1 182 250 33 17 chr1 189208247 189208307 -53456046 + MIR SINE MIR 96 156 -106 612 269 65 46 chr1 189208347 189208563 -53455790 + MIR SINE MIR 19 238 -24 2211 122 36 30 chr1 189208789 189209151 -53455202 + THE1B LTR MaLR 1 364 0 539 316 134 66 chr1 189209483 189210611 -53453742 - L2 LINE L2 -781 2533 1329 980 304 74 46 chr1 189210664 189211898 -53452455 + L1ME3 LINE L1 4617 5889 -273 13757 132 36 33 chr1 189211924 189213318 -53451035 + Tigger1 DNA MER2_type 1 1408 -1010 2276 108 0 0 chr1 189213318 189213614 -53450739 - AluSx SINE Alu -16 296 1 13757 132 36 33 chr1 189213614 189214628 -53449725 + Tigger1 DNA MER2_type 1408 2417 -1 249 98 0 0 chr1 189215249 189215290 -53449063 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2220 20 0 0 chr1 189215290 189215544 -53448809 - L1PA3 LINE L1 -10 6145 5892 222 327 164 48 chr1 189215751 189215855 -53448498 - MIR SINE MIR -75 133 18 898 185 0 12 chr1 189215989 189216151 -53448202 + FRAM SINE Alu 1 159 -17 187 271 43 14 chr1 189216592 189216662 -53447691 + MIR3 SINE MIR 101 172 -36 24 32 0 0 chr1 189217665 189217696 -53446657 + AT_rich Low_complexity Low_complexity 1 31 0 262 344 89 17 chr1 189219342 189219522 -53444831 + MIR3 SINE MIR 19 211 -51 737 266 5 43 chr1 189219991 189220050 -53444303 + MIR SINE MIR 60 120 -142 3143 140 43 4 chr1 189220050 189220586 -53443767 + L1PA16 LINE L1 5608 6164 -2 737 266 5 43 chr1 189220586 189220733 -53443620 + MIR SINE MIR 120 258 -4 32 26 0 0 chr1 189220969 189221008 -53443345 + AT_rich Low_complexity Low_complexity 1 39 0 307 322 0 0 chr1 189221048 189221138 -53443215 + L1MC4 LINE L1 6614 6703 -1339 273 221 14 28 chr1 189221143 189221288 -53443065 + (TA)n Simple_repeat Simple_repeat 1 143 0 23 0 0 0 chr1 189221301 189221324 -53443029 + AT_rich Low_complexity Low_complexity 1 23 0 204 40 0 0 chr1 189221460 189221485 -53442868 + (CA)n Simple_repeat Simple_repeat 2 26 0 2255 75 4 0 chr1 189221621 189221902 -53442451 + AluY SINE Alu 1 326 0 397 0 0 0 chr1 189221902 189221946 -53442407 + (TAAA)n Simple_repeat Simple_repeat 2 132 0 305 332 71 34 chr1 189222704 189222972 -53441381 + HAL1 LINE L1 1938 2215 -292 288 277 69 17 chr1 189222986 189223108 -53441245 - MLT1I LTR MaLR -272 137 19 1819 202 24 0 chr1 189223242 189223613 -53440740 + L1MA9 LINE L1 5696 6075 -237 992 150 90 0 chr1 189223704 189223847 -53440506 - L1MA9 LINE L1 0 6312 6145 432 0 0 0 chr1 189223847 189223895 -53440458 + (TG)n Simple_repeat Simple_repeat 2 49 0 992 150 90 0 chr1 189223895 189223951 -53440402 - L1MA9 LINE L1 -167 6145 6095 1837 117 3 73 chr1 189224430 189224767 -53439586 + AluSq SINE Alu 1 313 0 3202 135 58 23 chr1 189225065 189225095 -53439258 - L1MA4 LINE L1 0 6300 6273 2009 143 125 21 chr1 189225095 189225480 -53438873 - MSTA LTR MaLR 0 428 4 3202 135 58 23 chr1 189225480 189226051 -53438302 - L1MA4 LINE L1 -27 6273 5678 807 267 41 61 chr1 189226184 189226595 -53437758 - L1MEc LINE L1 -4999 1512 1015 240 354 8 8 chr1 189227071 189227201 -53437152 - L1MEc LINE L1 -6016 547 418 2381 55 3 0 chr1 189228339 189228628 -53435725 - AluY SINE Alu -18 293 4 5939 154 32 36 chr1 189228852 189229288 -53435065 + L1MA6 LINE L1 4189 4625 -1675 2310 108 0 0 chr1 189229288 189229594 -53434759 + AluSx SINE Alu 5 310 -2 5939 154 32 36 chr1 189229594 189231158 -53433195 + L1MA6 LINE L1 4625 6181 -119 1892 113 0 39 chr1 189231327 189231611 -53432742 + AluSg SINE Alu 38 310 0 1162 174 77 35 chr1 189234194 189234347 -53430006 + MER33 DNA MER1_type 2 147 -2438 1736 132 72 4 chr1 189234347 189234639 -53429714 + AluSx SINE Alu 1 310 0 1162 174 77 35 chr1 189234639 189234794 -53429559 + MER33 DNA MER1_type 147 324 0 366 276 0 0 chr1 189234813 189234889 -53429464 + MER5A DNA MER1_type 13 88 -101 364 321 64 0 chr1 189235034 189235174 -53429179 + MIR SINE MIR 43 191 -71 27 73 0 0 chr1 189235210 189235265 -53429088 + AT_rich Low_complexity Low_complexity 1 55 0 277 241 0 0 chr1 189236454 189236512 -53427841 - L2 LINE L2 0 3272 3215 794 222 135 13 chr1 189236650 189236880 -53427473 - MIR SINE MIR 0 262 5 249 333 93 23 chr1 189236898 189237027 -53427326 - MIR SINE MIR -123 139 2 232 200 15 31 chr1 189237257 189237322 -53427031 - L2 LINE L2 0 3313 3250 246 136 0 0 chr1 189238227 189238271 -53426082 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 1858 115 3 44 chr1 189238485 189238801 -53425552 + AluSx SINE Alu 1 304 0 188 250 181 0 chr1 189239164 189239236 -53425117 - MIR SINE MIR -2 260 176 360 0 0 0 chr1 189239240 189239280 -53425073 + (A)n Simple_repeat Simple_repeat 1 40 0 200 182 0 0 chr1 189239666 189239699 -53424654 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 358 172 13 chr1 189242275 189242577 -53421776 + L2 LINE L2 2423 2772 -542 234 322 25 83 chr1 189242699 189242820 -53421533 + L2 LINE L2 2948 3061 -211 1911 55 141 0 chr1 189243060 189243316 -53421037 + AluY SINE Alu 1 292 -19 25 51 0 0 chr1 189243689 189243728 -53420625 + AT_rich Low_complexity Low_complexity 1 39 0 1653 123 119 4 chr1 189244040 189244317 -53420036 + AluSg1 SINE Alu 1 309 0 388 297 17 42 chr1 189244776 189244894 -53419459 - MER5B DNA MER1_type -2 176 62 248 325 13 0 chr1 189245920 189245997 -53418356 - L2 LINE L2 -671 2643 2566 730 224 118 6 chr1 189246173 189246343 -53418010 - MER5A DNA MER1_type 0 189 1 1061 230 10 86 chr1 189246481 189246876 -53417477 + MLT1A1 LTR MaLR 1 365 0 1539 243 78 24 chr1 189246918 189247585 -53416768 - L2 LINE L2 0 3313 2606 2052 115 3 10 chr1 189247632 189247944 -53416409 - AluSg SINE Alu 0 310 1 237 388 78 37 chr1 189248789 189249034 -53415319 - L2 LINE L2 -4 3268 3014 958 229 37 5 chr1 189249163 189249377 -53414976 + MLT1A1 LTR MaLR 1 221 -144 269 398 51 0 chr1 189249506 189249682 -53414671 + MIR SINE MIR 14 198 -64 217 213 53 11 chr1 189250858 189250952 -53413401 + (TAA)n Simple_repeat Simple_repeat 2 99 0 248 258 79 107 chr1 189250968 189251146 -53413207 - MER104 DNA Tc2 -7 173 1 341 286 78 26 chr1 189252104 189252258 -53412095 - L2 LINE L2 0 3313 3152 238 383 173 6 chr1 189252595 189252919 -53411434 - L2 LINE L2 -576 2738 2361 2295 101 49 20 chr1 189252970 189253315 -53411038 - THE1B LTR MaLR 0 364 10 1925 129 30 17 chr1 189253405 189253700 -53410653 + AluSx SINE Alu 1 299 -13 302 359 69 14 chr1 189254034 189254179 -53410174 - L2 LINE L2 -244 3028 2876 21 57 0 0 chr1 189255192 189255227 -53409126 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 189255386 189255410 -53408943 + AT_rich Low_complexity Low_complexity 1 24 0 907 261 54 0 chr1 189255842 189256064 -53408289 - MIR SINE MIR -21 241 8 227 361 22 27 chr1 189257384 189257533 -53406820 - MIR SINE MIR -65 143 43 2118 128 3 0 chr1 189257647 189257951 -53406402 - AluSx SINE Alu -7 305 1 334 273 125 8 chr1 189259132 189259260 -53405093 - MIR SINE MIR -9 253 111 847 241 0 0 chr1 189260216 189260374 -53403979 + Tigger3(Golem) DNA MER2_type 1 158 -2871 * 4622 154 33 8 chr1 189260373 189260616 -53403737 + Tigger3(Golem) DNA MER2_type 2163 2398 -630 2370 95 0 0 chr1 189260616 189260921 -53403432 - AluY SINE Alu -6 305 1 4622 154 33 8 chr1 189260921 189261521 -53402832 + Tigger3(Golem) DNA MER2_type 2398 3027 -1 2852 7 0 0 chr1 189261969 189262276 -53402077 + AluYb8 SINE Alu 1 307 -11 437 259 179 5 chr1 189262350 189262544 -53401809 + MIR SINE MIR 16 248 -14 448 276 160 0 chr1 189262932 189263088 -53401265 + MIR SINE MIR 72 252 -10 205 250 0 0 chr1 189263137 189263181 -53401172 + GA-rich Low_complexity Low_complexity 3 46 0 2089 96 9 75 chr1 189263211 189263545 -53400808 + AluSx SINE Alu 1 312 0 243 325 130 55 chr1 189263699 189263991 -53400362 - L2 LINE L2 -579 2735 2422 324 350 45 79 chr1 189265163 189265454 -53398899 - L2 LINE L2 -73 3199 2919 2180 104 0 16 chr1 189265677 189265984 -53398369 + AluSx SINE Alu 11 312 0 503 283 122 19 chr1 189266086 189266468 -53397885 + L1ME4a LINE L1 5257 5673 -519 5082 174 59 48 chr1 189266489 189268070 -53396283 - pTR5 LTR ERV1 0 2438 743 358 353 79 12 chr1 189268071 189268323 -53396030 + L1ME4a LINE L1 5691 5959 -162 24 0 0 0 chr1 189270421 189270445 -53393908 + AT_rich Low_complexity Low_complexity 1 24 0 730 328 83 23 chr1 189270643 189271030 -53393323 - MLT1J2 LTR MaLR -40 410 1 226 346 26 0 chr1 189271030 189271108 -53393245 - MIR SINE MIR -178 84 5 4566 161 47 30 chr1 189271141 189272082 -53392271 - L1MD1 LINE L1 0 6502 5546 230 294 20 14 chr1 189272060 189272206 -53392147 - L1MD1 LINE L1 -1663 4743 4597 * 3609 234 59 64 chr1 189272809 189275727 -53388626 - L1MD1 LINE L1 -1840 4566 1654 3674 235 30 39 chr1 189276421 189277711 -53386642 - L1MD1 LINE L1 -4763 1643 375 396 133 36 0 chr1 189277713 189277796 -53386557 + CT-rich Low_complexity Low_complexity 2 87 0 1193 260 59 28 chr1 189277798 189278152 -53386201 - L1MD1 LINE L1 -6037 372 8 29 0 0 0 chr1 189278306 189278335 -53386018 + AT_rich Low_complexity Low_complexity 1 29 0 1770 174 36 0 chr1 189281031 189281388 -53382965 + L1 LINE L1 2663 3032 -3114 1695 313 123 16 chr1 189281390 189282196 -53382157 + L2 LINE L2 522 1413 -1901 1636 206 67 27 chr1 189282219 189282666 -53381687 - LTR40c LTR ERVL 0 465 1 6622 261 56 49 chr1 189282666 189283288 -53381065 - HERVL40 LTR ERVL -2 5528 4912 560 188 154 17 chr1 189283288 189283405 -53380948 + FLAM_C SINE Alu 1 133 0 6622 261 56 49 chr1 189283405 189284908 -53379445 - HERVL40 LTR ERVL -618 4912 3389 929 247 22 72 chr1 189285226 189285546 -53378807 - HERVL40 LTR ERVL -4311 1219 916 290 193 18 0 chr1 189285734 189285791 -53378562 - HERVL40 LTR ERVL -5455 75 18 1692 232 49 22 chr1 189285805 189286258 -53378095 - LTR40c LTR ERVL 0 465 1 210 291 89 89 chr1 189286258 189286461 -53377892 + L2 LINE L2 1459 1661 -1653 1742 300 106 69 chr1 189286604 189288240 -53376113 + L2 LINE L2 1608 3305 -8 935 220 24 5 chr1 189289456 189289665 -53374688 + MLT1D LTR MaLR 293 505 0 2150 301 64 15 chr1 189289833 189290689 -53373664 + HERVL LTR ERVL 1596 2497 -2677 376 320 78 74 chr1 189290992 189291381 -53372972 + LTR16A LTR ERVL 2 438 -12 1221 229 90 6 chr1 189291475 189291908 -53372445 + MLT1F1 LTR MaLR 1 567 0 590 338 93 14 chr1 189291927 189292217 -53372136 + HERVL LTR ERVL 4012 4324 -1161 611 310 52 60 chr1 189292220 189292604 -53371749 + HERVL LTR ERVL 4550 4930 -834 541 312 75 32 chr1 189292781 189293089 -53371264 + MLT1H LTR MaLR 229 549 0 2177 119 0 13 chr1 189293519 189293830 -53370523 - AluSg SINE Alu -3 307 1 3621 246 39 39 chr1 189293832 189294561 -53369792 - L1MDa LINE L1 -1978 4562 3831 1505 196 116 12 chr1 189294561 189294888 -53369465 - MLT1A1 LTR MaLR -2 363 3 3621 246 39 39 chr1 189294888 189295556 -53368797 - L1MDa LINE L1 -2708 3832 3165 2088 124 7 0 chr1 189295897 189296187 -53368166 + AluSp SINE Alu 3 294 -19 1480 222 81 64 chr1 189296414 189297414 -53366939 - L1MDa LINE L1 -3363 3177 2149 219 69 0 0 chr1 189348054 189348083 -53316270 + (CA)n Simple_repeat Simple_repeat 2 30 0 2187 137 17 90 chr1 189349840 189350307 -53314046 + Tigger2a DNA MER2_type 2 434 0 40 37 0 0 chr1 189350429 189350483 -53313870 + AT_rich Low_complexity Low_complexity 1 54 0 294 278 86 53 chr1 189350825 189350976 -53313377 - MIR SINE MIR -83 179 24 4313 238 56 12 chr1 189351505 189352818 -53311535 + L1ME1 LINE L1 3815 5184 -962 2108 206 82 85 chr1 189352919 189353719 -53310634 + L1ME1 LINE L1 5364 6161 -5 415 282 86 24 chr1 189353781 189353990 -53310363 + L2 LINE L2 1822 2043 -1271 349 240 34 0 chr1 189354558 189354657 -53309696 + L1ME1 LINE L1 5896 6001 -179 387 0 0 0 chr1 189354659 189354702 -53309651 + (TG)n Simple_repeat Simple_repeat 2 44 0 387 347 53 12 chr1 189355156 189355326 -53309027 + MIR SINE MIR 2 178 -84 1121 235 66 40 chr1 189355328 189355860 -53308493 - MLT1E LTR MaLR 0 593 1 785 135 0 74 chr1 189356071 189356219 -53308134 - AluJb SINE Alu -7 305 169 180 0 0 0 chr1 189356252 189356272 -53308081 + (ATG)n Simple_repeat Simple_repeat 1 20 0 365 171 116 27 chr1 189356576 189356722 -53307631 - L1ME4a LINE L1 -3 6118 5960 24 53 0 0 chr1 189356982 189357020 -53307333 + AT_rich Low_complexity Low_complexity 1 38 0 209 231 6 81 chr1 189357643 189357803 -53306550 + T-rich Low_complexity Low_complexity 2 149 0 2558 124 0 22 chr1 189357807 189358217 -53306136 - L1PA14 LINE L1 0 6161 5761 319 284 55 0 chr1 189358477 189358586 -53305767 - L1ME3A LINE L1 0 6170 6056 258 287 218 0 chr1 189359064 189359165 -53305188 + MLT1L LTR MaLR 86 208 -407 311 229 52 10 chr1 189359404 189359500 -53304853 + MLT1L LTR MaLR 516 615 0 195 129 0 0 chr1 189359533 189359564 -53304789 + (TC)n Simple_repeat Simple_repeat 2 32 0 1413 29 0 29 chr1 189360062 189360236 -53304117 + AluYa5 SINE Alu 143 311 0 22 0 0 0 chr1 189360236 189360258 -53304095 + AT_rich Low_complexity Low_complexity 1 22 0 402 309 160 0 chr1 189360621 189360815 -53303538 + MIR SINE MIR 38 262 0 7490 45 3 33 chr1 189360926 189362354 -53301999 + SVA Other Other 118 1386 0 254 322 22 67 chr1 189362594 189362774 -53301579 - MIR SINE MIR -46 216 45 301 313 8 60 chr1 189363365 189363499 -53300854 + MER5A DNA MER1_type 39 165 -24 21 57 0 0 chr1 189364131 189364166 -53300187 + AT_rich Low_complexity Low_complexity 1 35 0 304 320 48 7 chr1 189365403 189365550 -53298803 + MIR SINE MIR 106 258 -4 1102 417 14 0 chr1 189365558 189365841 -53298512 - AluY SINE Alu -14 287 1 206 276 129 26 chr1 189366259 189366375 -53297978 - MIR SINE MIR -4 258 131 665 371 89 17 chr1 189366496 189367089 -53297264 - L3 LINE CR1 -6 1571 936 21 36 0 0 chr1 189367153 189367181 -53297172 + AT_rich Low_complexity Low_complexity 1 28 0 1121 85 0 12 chr1 189367525 189367689 -53296664 - L1PA13 LINE L1 -5 6158 5997 418 189 63 0 chr1 189367697 189367792 -53296561 - MLT1L LTR MaLR -315 300 200 258 237 0 17 chr1 189367760 189367819 -53296534 - MLT1J LTR MaLR -344 167 110 * 243 324 0 0 chr1 189367941 189368009 -53296344 - L3 LINE CR1 -855 722 655 307 295 87 58 chr1 189368070 189368283 -53296070 - MIR SINE MIR -40 222 5 253 283 50 33 chr1 189368458 189368578 -53295775 + L2 LINE L2 3192 3313 0 22 0 0 0 chr1 189369947 189369969 -53294384 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 189370325 189370347 -53294006 + AT_rich Low_complexity Low_complexity 1 22 0 244 404 76 12 chr1 189370978 189371149 -53293204 + L2 LINE L2 2576 2757 -557 2263 82 0 14 chr1 189371401 189371693 -53292660 - AluY SINE Alu -20 291 4 2236 104 3 25 chr1 189372443 189372760 -53291593 - AluSg SINE Alu 0 310 1 388 373 8 0 chr1 189374481 189374607 -53289746 - L2 LINE L2 0 3272 3146 592 311 84 0 chr1 189374773 189374963 -53289390 - MIR SINE MIR -8 254 49 1562 190 0 4 chr1 189375114 189375388 -53288965 - AluSx SINE Alu -11 301 29 544 233 26 0 chr1 189375666 189375782 -53288571 + L2 LINE L2 2504 2622 -692 608 249 66 54 chr1 189375794 189376035 -53288318 + L2 LINE L2 3008 3251 -62 312 247 75 32 chr1 189376340 189376433 -53287920 - MIR SINE MIR -68 140 44 222 200 0 0 chr1 189376815 189376855 -53287498 + (TG)n Simple_repeat Simple_repeat 1 40 0 523 233 89 74 chr1 189378163 189378365 -53285988 - MIR SINE MIR -10 252 48 190 280 144 34 chr1 189378586 189378713 -53285640 + MIR SINE MIR 25 148 -60 343 326 40 8 chr1 189379494 189379666 -53284687 + MIR SINE MIR 32 206 -5 286 310 138 44 chr1 189379828 189380407 -53283946 + L2 LINE L2 1451 3242 -71 24 85 0 0 chr1 189380408 189380467 -53283886 + AT_rich Low_complexity Low_complexity 1 59 0 844 235 0 0 chr1 189380523 189380689 -53283664 + FRAM SINE Alu 1 166 0 25 51 0 0 chr1 189381051 189381090 -53283263 + AT_rich Low_complexity Low_complexity 1 39 0 423 0 0 0 chr1 189381962 189382009 -53282344 + (CA)n Simple_repeat Simple_repeat 2 48 0 1086 304 100 25 chr1 189382156 189382627 -53281726 - L2 LINE L2 -4 3309 2804 605 170 0 36 chr1 189382665 189382777 -53281576 - FLAM_A SINE Alu -12 130 23 1101 328 95 24 chr1 189382990 189383622 -53280731 - L2 LINE L2 -1341 1973 1297 200 347 84 0 chr1 189383943 189384038 -53280315 + L2 LINE L2 3209 3311 -2 424 286 79 8 chr1 189384368 189384494 -53279859 - L2 LINE L2 -2 3270 3136 261 313 34 82 chr1 189385619 189385766 -53278587 + Charlie8 DNA MER1_type 1 140 -2277 505 295 17 40 chr1 189385784 189385957 -53278396 - MIR SINE MIR -62 200 32 239 247 41 14 chr1 189386022 189386095 -53278258 + Charlie8 DNA MER1_type 157 231 -2186 184 172 35 0 chr1 189387236 189387294 -53277059 + (TTA)n Simple_repeat Simple_repeat 3 62 0 611 299 58 29 chr1 189387916 189388123 -53276230 + MIR SINE MIR 40 252 -10 2263 154 55 10 chr1 189389564 189389979 -53274374 - Tigger2a DNA MER2_type 0 434 1 657 203 43 112 chr1 189389979 189390317 -53274036 - LTR37B LTR ERV1 -11 457 100 303 330 0 0 chr1 189394829 189394917 -53269436 + L2 LINE L2 3226 3313 0 203 88 29 0 chr1 189395216 189395250 -53269103 + (TCC)n Simple_repeat Simple_repeat 3 37 0 * 204 40 0 0 chr1 189395246 189395271 -53269082 + (T)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr1 189396488 189396519 -53267834 + (CA)n Simple_repeat Simple_repeat 1 31 0 209 260 20 0 chr1 189397018 189397068 -53267285 - L2 LINE L2 -9 3263 3213 319 316 42 0 chr1 189397361 189397456 -53266897 - L2 LINE L2 -4 3309 3211 2158 126 0 0 chr1 189397494 189397787 -53266566 + AluSx SINE Alu 3 295 -17 559 310 60 53 chr1 189397971 189398271 -53266082 - L2 LINE L2 -402 2912 2611 248 259 98 36 chr1 189398419 189398531 -53265822 - L2 LINE L2 -964 2350 2232 289 188 0 29 chr1 189398587 189398656 -53265697 - MLT1E LTR MaLR 0 593 527 958 159 13 66 chr1 189398792 189399018 -53265335 - L1M3 LINE L1 -574 5760 5547 350 314 17 16 chr1 189399091 189399236 -53265117 + MIR SINE MIR 29 176 -32 336 344 0 0 chr1 189399649 189399745 -53264608 + MIR3 SINE MIR 98 193 -15 361 176 27 0 chr1 189399816 189399890 -53264463 - MER116 DNA Mariner -4 76 1 730 308 37 40 chr1 189400602 189400806 -53263547 - L3 LINE CR1 -56 1521 1317 2353 52 6 58 chr1 189400806 189401131 -53263222 - AluY SINE Alu -3 308 1 730 308 37 40 chr1 189401131 189401248 -53263105 - L3 LINE CR1 -260 1317 1201 616 85 9 75 chr1 189401272 189401378 -53262975 + L1PA16 LINE L1 6024 6122 -44 309 394 12 6 chr1 189401395 189401560 -53262793 - L3 LINE CR1 -437 1140 975 451 293 98 47 chr1 189401595 189401912 -53262441 + L1ME LINE L1 31 363 -5707 1972 144 7 0 chr1 189402376 189402681 -53261672 + AluSx SINE Alu 1 307 -5 34 65 0 0 chr1 189403285 189403347 -53261006 + AT_rich Low_complexity Low_complexity 1 62 0 727 252 18 73 chr1 189404223 189404497 -53259856 - MLT1E LTR MaLR -331 262 4 1652 146 29 67 chr1 189404497 189404813 -53259540 + AluJb SINE Alu 1 304 -8 278 331 37 40 chr1 189405062 189405388 -53258965 - L1MEd LINE L1 -5293 826 502 24 0 0 0 chr1 189405889 189405913 -53258440 + AT_rich Low_complexity Low_complexity 1 24 0 432 276 26 44 chr1 189406083 189406311 -53258042 - L1ME LINE L1 -5306 764 541 774 206 0 0 chr1 189406724 189406870 -53257483 + FRAM SINE Alu 1 146 -30 374 356 48 26 chr1 189407910 189408140 -53256213 + MIR SINE MIR 28 262 0 572 227 87 74 chr1 189409915 189410035 -53254318 + MIR SINE MIR 31 157 -105 3167 31 21 0 chr1 189410035 189410420 -53253933 + L1PA4 LINE L1 5763 6155 0 572 227 87 74 chr1 189410420 189410528 -53253825 + MIR SINE MIR 157 262 0 306 0 0 0 chr1 189410681 189410715 -53253638 + (CA)n Simple_repeat Simple_repeat 2 35 0 267 271 198 10 chr1 189411850 189411946 -53252407 + L2 LINE L2 3199 3312 -1 432 0 0 0 chr1 189413703 189413751 -53250602 + (CA)n Simple_repeat Simple_repeat 2 49 0 2105 101 27 14 chr1 189414160 189414456 -53249897 + AluSc SINE Alu 1 300 -9 5415 152 17 21 chr1 189414591 189415960 -53248393 + L1PA16 LINE L1 4797 6148 -18 480 279 144 14 chr1 189416200 189416415 -53247938 + MIR SINE MIR 5 247 -15 285 336 56 16 chr1 189416447 189416572 -53247781 + L2 LINE L2 3137 3266 -6 22 0 0 0 chr1 189416822 189416844 -53247509 + AT_rich Low_complexity Low_complexity 1 22 0 207 213 21 0 chr1 189417244 189417291 -53247062 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 769 177 0 0 chr1 189418161 189418291 -53246062 - FLAM_A SINE Alu -3 130 1 225 294 0 0 chr1 189418296 189418347 -53246006 - L2 LINE L2 -279 3034 2984 466 309 20 13 chr1 189418457 189418609 -53245744 + MIR SINE MIR 110 262 0 2197 114 3 0 chr1 189418629 189418926 -53245427 - AluSq SINE Alu -15 298 1 2294 89 7 0 chr1 189419754 189420047 -53244306 + AluSx SINE Alu 2 296 -16 415 347 73 20 chr1 189422432 189422680 -53241673 - MIR SINE MIR 0 262 2 192 77 0 0 chr1 189423116 189423142 -53241211 + (T)n Simple_repeat Simple_repeat 1 26 0 1900 157 7 3 chr1 189423480 189423785 -53240568 + AluJo SINE Alu 2 307 -5 26 0 0 0 chr1 189423865 189423891 -53240462 + AT_rich Low_complexity Low_complexity 1 26 0 391 18 18 18 chr1 189424061 189424118 -53240235 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 1406 178 3 27 chr1 189424118 189424411 -53239942 - AluJb SINE Alu -16 286 1 1255 226 91 61 chr1 189424780 189425188 -53239165 - LTR41 LTR ERVL -6 767 348 243 252 219 0 chr1 189425292 189425411 -53238942 - LTR41 LTR ERVL -415 358 214 1045 232 115 31 chr1 189425476 189425799 -53238554 - LTR41 LTR ERVL -423 350 1 1087 298 59 14 chr1 189425950 189426376 -53237977 - ERVL LTR ERVL -387 5377 4933 380 326 95 46 chr1 189426761 189427151 -53237202 - L2 LINE L2 -437 2877 2469 282 235 35 12 chr1 189427255 189427340 -53237013 + (CATATA)n Simple_repeat Simple_repeat 3 89 0 37 69 0 0 chr1 189427361 189427433 -53236920 + AT_rich Low_complexity Low_complexity 1 72 0 367 342 25 25 chr1 189427678 189427836 -53236517 + MIR3 SINE MIR 44 201 -7 445 263 0 10 chr1 189428218 189428317 -53236036 + L2 LINE L2 3190 3287 -26 353 241 58 11 chr1 189428316 189428403 -53235950 + MIR SINE MIR 70 160 -102 * 1551 229 34 8 chr1 189428566 189428920 -53235433 + MLT1A1 LTR MaLR 3 365 0 1974 135 29 24 chr1 189428961 189429409 -53234944 - L1MC/D LINE L1 -730 5603 5153 221 56 0 28 chr1 189429416 189429452 -53234901 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6608 32 0 0 chr1 189429452 189430229 -53234124 - L1PA3 LINE L1 -24 6131 5355 * 16207 24 0 0 chr1 189430226 189432140 -53232213 + L1PA3 LINE L1 3453 5366 -780 1277 133 0 0 chr1 189433299 189433495 -53230858 - Tigger7 DNA MER2_type -2 2485 2290 482 250 9 0 chr1 189433493 189433605 -53230748 - Tigger7 DNA MER2_type -2351 136 24 * 486 227 0 0 chr1 189434017 189434149 -53230204 + GA-rich Low_complexity Low_complexity 1 132 0 300 27 0 0 chr1 189434151 189434188 -53230165 + (AGATG)n Simple_repeat Simple_repeat 4 40 0 2325 64 14 14 chr1 189434747 189435043 -53229310 + AluY SINE Alu 3 298 -13 975 182 45 0 chr1 189435468 189435666 -53228687 + L1MA9 LINE L1 6068 6274 -38 1073 183 5 0 chr1 189435787 189436000 -53228353 + L1MA7 LINE L1 6056 6269 -22 22 0 0 0 chr1 189436019 189436041 -53228312 + AT_rich Low_complexity Low_complexity 1 22 0 251 338 26 0 chr1 189436540 189436617 -53227736 + L2 LINE L2 3201 3279 -34 234 0 0 0 chr1 189436643 189436669 -53227684 + (T)n Simple_repeat Simple_repeat 1 26 0 1464 163 178 23 chr1 189436726 189437069 -53227284 + MSTD LTR MaLR 1 396 0 334 361 39 6 chr1 189437114 189437294 -53227059 + MIR3 SINE MIR 10 195 -13 222 227 23 0 chr1 189437698 189437742 -53226611 + L2 LINE L2 3136 3180 -92 42 71 0 0 chr1 189438223 189438307 -53226046 + AT_rich Low_complexity Low_complexity 1 84 0 205 211 18 18 chr1 189438456 189438513 -53225840 + (CATA)n Simple_repeat Simple_repeat 4 60 0 368 327 52 0 chr1 189439706 189439859 -53224494 - MIR SINE MIR -11 251 91 22 56 0 0 chr1 189440304 189440340 -53224013 + AT_rich Low_complexity Low_complexity 1 36 0 278 268 27 89 chr1 189440441 189440553 -53223800 + L2 LINE L2 3207 3311 -2 246 32 0 0 chr1 189440904 189440935 -53223418 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 706 144 0 34 chr1 189440938 189441056 -53223297 - AluSg/x SINE Alu -29 283 170 206 300 0 0 chr1 189442330 189442390 -53221963 + L2 LINE L2 3213 3272 0 602 296 69 12 chr1 189442830 189443077 -53221276 - MIR SINE MIR 0 262 2 218 340 53 21 chr1 189443092 189443186 -53221167 + L2 LINE L2 3136 3232 -40 1871 172 49 11 chr1 189444941 189445289 -53219064 - MLT1A1 LTR MaLR -4 361 1 198 0 0 0 chr1 189445603 189445625 -53218728 + (T)n Simple_repeat Simple_repeat 1 22 0 422 254 119 0 chr1 189446153 189446271 -53218082 - MIR SINE MIR -52 210 79 282 273 209 18 chr1 189449202 189449312 -53215041 + MIR SINE MIR 57 187 -75 901 218 121 41 chr1 189452794 189453206 -53211147 - L1MC4 LINE L1 -1 8041 7597 252 408 50 8 chr1 189453919 189454039 -53210314 + L2 LINE L2 3148 3272 0 1008 178 6 0 chr1 189454668 189454842 -53209511 + AluJb SINE Alu 129 303 -9 201 161 0 0 chr1 189455220 189455251 -53209102 + A-rich Low_complexity Low_complexity 3 33 0 323 247 273 10 chr1 189455769 189455963 -53208390 - L2 LINE L2 -43 3270 3026 209 280 57 103 chr1 189458542 189458717 -53205636 - MIR SINE MIR -50 212 46 587 275 108 22 chr1 189459757 189459979 -53204374 - MIR SINE MIR -18 244 4 180 303 107 77 chr1 189460811 189461345 -53203008 + L2 LINE L2 2311 2860 -454 2095 133 0 0 chr1 189461501 189461802 -53202551 - AluSx SINE Alu -2 310 10 245 286 73 59 chr1 189461870 189461964 -53202389 + L2 LINE L2 3088 3179 -134 327 49 0 0 chr1 189461964 189462005 -53202348 + (TG)n Simple_repeat Simple_repeat 2 42 0 245 286 73 59 chr1 189462005 189462130 -53202223 + L2 LINE L2 3179 3310 -3 27 29 0 0 chr1 189462198 189462232 -53202121 + AT_rich Low_complexity Low_complexity 1 34 0 1390 256 114 8 chr1 189464604 189465103 -53199250 + L2 LINE L2 1562 2113 -1201 617 291 23 27 chr1 189465083 189465303 -53199050 + L2 LINE L2 3094 3312 -1 * 218 259 0 0 chr1 189465743 189465801 -53198552 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 776 217 202 45 chr1 189466051 189466521 -53197832 + MLT1H LTR MaLR 8 555 0 332 218 15 105 chr1 189467254 189467387 -53196966 - MIR SINE MIR -19 243 123 185 256 37 85 chr1 189468813 189468895 -53195458 - MER5B DNA MER1_type -18 160 83 21 0 0 0 chr1 189468961 189468982 -53195371 + AT_rich Low_complexity Low_complexity 1 21 0 2194 110 0 0 chr1 189469746 189470063 -53194290 - AluSx SINE Alu 0 317 1 2218 103 3 3 chr1 189471891 189472193 -53192160 + AluSc SINE Alu 1 302 -7 3471 216 17 30 chr1 189472419 189473231 -53191122 + L1PBa LINE L1 843 1644 -5219 * 12190 169 30 16 chr1 189473198 189479275 -53185078 + L1PB2 LINE L1 8 6201 -7 24 0 0 0 chr1 189479974 189479998 -53184355 + AT_rich Low_complexity Low_complexity 1 24 0 281 350 0 0 chr1 189480566 189480646 -53183707 - L2 LINE L2 -9 3263 3184 315 390 51 20 chr1 189481436 189481631 -53182722 - L1MEd LINE L1 -5664 455 255 2205 162 81 2 chr1 189482071 189482466 -53181887 - MSTB LTR MaLR 0 426 1 2313 94 0 3 chr1 189482493 189482802 -53181551 + AluSq SINE Alu 1 308 -5 2061 278 101 22 chr1 189482820 189483686 -53180667 + L1ME1 LINE L1 77 1023 -5373 186 43 0 0 chr1 189483686 189483709 -53180644 + (CA)n Simple_repeat Simple_repeat 2 24 0 2061 278 101 22 chr1 189483709 189483777 -53180576 + L1ME1 LINE L1 1023 1084 -5312 * 2877 267 78 40 chr1 189483775 189486202 -53178151 + L1ME1 LINE L1 1431 3916 -2299 997 194 82 37 chr1 189486202 189486611 -53177742 + L1ME1 LINE L1 5135 5560 -675 719 287 51 0 chr1 189486629 189486866 -53177487 + L1ME1 LINE L1 5982 6230 -5 450 204 0 0 chr1 189487266 189487369 -53176984 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 350 217 39 8 chr1 189487557 189487686 -53176667 + (TA)n Simple_repeat Simple_repeat 2 134 0 268 24 49 0 chr1 189487692 189487733 -53176620 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 462 111 11 22 chr1 189488240 189488330 -53176023 + (GGAA)n Simple_repeat Simple_repeat 2 90 0 384 319 42 14 chr1 189488536 189488680 -53175673 + MIR SINE MIR 19 166 -96 222 223 27 179 chr1 189488670 189488713 -53175640 + MER5A DNA MER1_type 91 108 -81 * 282 106 0 0 chr1 189488713 189488760 -53175593 + (TG)n Simple_repeat Simple_repeat 2 48 0 222 223 27 179 chr1 189488760 189488828 -53175525 + MER5A DNA MER1_type 108 185 -4 2221 112 133 5 chr1 189488877 189489252 -53175101 - MSTA LTR MaLR 0 428 6 405 0 0 0 chr1 189492751 189492796 -53171557 + (TTA)n Simple_repeat Simple_repeat 2 46 0 251 271 56 56 chr1 189492826 189492933 -53171420 + L2 LINE L2 3202 3308 -5 3540 161 99 9 chr1 189494491 189495170 -53169183 + L1MC3 LINE L1 7045 7784 -1 23 54 0 0 chr1 189495208 189495245 -53169108 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr1 189498035 189498075 -53166278 + AT_rich Low_complexity Low_complexity 1 40 0 332 307 63 29 chr1 189498183 189498388 -53165965 - L1MC4 LINE L1 -1071 6971 6760 277 202 58 58 chr1 189498875 189498979 -53165374 - L1MC5 LINE L1 -91 7870 7767 424 298 124 19 chr1 189498980 189499141 -53165212 - MER5A DNA MER1_type -2 187 10 884 277 57 79 chr1 189499151 189500065 -53164288 - L1MC5 LINE L1 -186 7775 6882 760 232 8 42 chr1 189500074 189500311 -53164042 + L1MC5 LINE L1 7683 7911 -50 789 265 25 13 chr1 189500333 189500571 -53163782 - L1MC4 LINE L1 -1052 6990 6750 25 31 0 0 chr1 189502464 189502496 -53161857 + AT_rich Low_complexity Low_complexity 1 32 0 187 294 59 0 chr1 189502513 189502564 -53161789 + L2 LINE L2 2999 3052 -220 273 368 40 24 chr1 189503211 189503336 -53161017 + L2 LINE L2 2662 2788 -526 207 0 0 0 chr1 189503527 189503550 -53160803 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 231 360 10 10 chr1 189503639 189503739 -53160614 + L2 LINE L2 3141 3240 -32 363 279 42 73 chr1 189503973 189504247 -53160106 + LTR49-int LTR ERV1 3831 5400 -931 582 232 185 72 chr1 189504504 189504866 -53159487 + LTR37A LTR ERV1 21 423 -3 621 285 105 100 chr1 189505033 189505384 -53158969 - L2 LINE L2 0 3272 2920 188 189 0 0 chr1 189505688 189505725 -53158628 - L2 LINE L2 0 3313 3277 296 250 11 45 chr1 189507098 189507186 -53157167 - MIR SINE MIR -98 164 80 25 31 0 0 chr1 189507248 189507280 -53157073 + AT_rich Low_complexity Low_complexity 1 32 0 367 293 86 56 chr1 189507385 189507617 -53156736 - MIR SINE MIR -17 245 7 3129 225 121 88 chr1 189508217 189509780 -53154573 + L1MCc LINE L1 6 1743 -5198 376 228 39 47 chr1 189509937 189510064 -53154289 - MIR SINE MIR -69 193 68 23 33 0 0 chr1 189510813 189510843 -53153510 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr1 189512607 189512652 -53151701 + AT_rich Low_complexity Low_complexity 1 45 0 1774 116 4 0 chr1 189512944 189513186 -53151167 - AluSp SINE Alu -70 243 1 23 54 0 0 chr1 189513792 189513829 -53150524 + AT_rich Low_complexity Low_complexity 1 37 0 2638 14 3 0 chr1 189514183 189514478 -53149875 + AluYa5 SINE Alu 1 296 -15 310 264 35 0 chr1 189514810 189514897 -53149456 + L1MC4 LINE L1 6614 6703 -1339 348 259 0 0 chr1 189514904 189515012 -53149341 + (TG)n Simple_repeat Simple_repeat 1 108 0 277 356 168 10 chr1 189516330 189516538 -53147815 - MIR SINE MIR -3 259 19 485 328 71 0 chr1 189516590 189516773 -53147580 + MIR SINE MIR 11 206 -56 321 109 0 0 chr1 189516992 189517047 -53147306 + (T)n Simple_repeat Simple_repeat 1 55 0 7113 8 0 0 chr1 189517048 189517849 -53146504 - L1HS LINE L1 0 6155 5355 * 16170 24 0 0 chr1 189517846 189519760 -53144593 + L1HS LINE L1 3453 5366 -780 1282 133 0 0 chr1 189520919 189521115 -53143238 - Tigger7 DNA MER2_type -2 2585 2390 491 250 9 0 chr1 189521113 189521225 -53143128 - Tigger7 DNA MER2_type -597 136 24 * 486 227 0 0 chr1 189521637 189521769 -53142584 + GA-rich Low_complexity Low_complexity 1 132 0 300 27 0 0 chr1 189521771 189521808 -53142545 + (AGATG)n Simple_repeat Simple_repeat 4 40 0 2286 64 14 14 chr1 189522367 189522663 -53141690 + AluY SINE Alu 3 298 -13 994 182 45 0 chr1 189523088 189523286 -53141067 + L1MA9 LINE L1 6068 6274 -38 1091 183 5 0 chr1 189523407 189523620 -53140733 + L1MA7 LINE L1 6056 6269 -22 22 0 0 0 chr1 189523639 189523661 -53140692 + AT_rich Low_complexity Low_complexity 1 22 0 265 325 26 0 chr1 189524159 189524236 -53140117 + L2 LINE L2 3201 3279 -34 234 0 0 0 chr1 189524262 189524288 -53140065 + (T)n Simple_repeat Simple_repeat 1 26 0 1413 163 177 26 chr1 189524345 189524689 -53139664 + MSTD LTR MaLR 1 396 0 308 369 45 6 chr1 189524734 189524913 -53139440 + MIR3 SINE MIR 10 195 -13 218 227 23 0 chr1 189525317 189525361 -53138992 + L2 LINE L2 3136 3180 -92 42 71 0 0 chr1 189525842 189525926 -53138427 + AT_rich Low_complexity Low_complexity 1 84 0 205 211 18 18 chr1 189526075 189526132 -53138221 + (CATA)n Simple_repeat Simple_repeat 4 60 0 375 327 52 0 chr1 189527326 189527479 -53136874 - MIR SINE MIR -11 251 91 22 56 0 0 chr1 189527924 189527960 -53136393 + AT_rich Low_complexity Low_complexity 1 36 0 280 268 27 89 chr1 189528061 189528173 -53136180 + L2 LINE L2 3207 3311 -2 246 32 0 0 chr1 189528524 189528555 -53135798 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1973 131 3 0 chr1 189528558 189528840 -53135513 - AluSx SINE Alu -29 283 1 25 31 0 0 chr1 189529490 189529522 -53134831 + AT_rich Low_complexity Low_complexity 1 32 0 282 461 0 17 chr1 189529827 189530005 -53134348 - L2 LINE L2 -219 3053 2879 813 126 0 0 chr1 189530178 189530297 -53134056 + MER30 DNA MER1_type 1 119 -111 954 167 0 0 chr1 189530297 189530477 -53133876 + GA-rich Low_complexity Low_complexity 1 180 0 399 138 7 53 chr1 189530605 189530757 -53133596 + GA-rich Low_complexity Low_complexity 4 148 0 679 161 0 88 chr1 189530757 189530822 -53133531 + MER30 DNA MER1_type 106 154 -76 2370 91 0 0 chr1 189530822 189531119 -53133234 + AluSx SINE Alu 1 297 -15 679 161 0 88 chr1 189531119 189531190 -53133163 + MER30 DNA MER1_type 154 230 0 277 356 168 10 chr1 189533582 189533790 -53130563 - MIR SINE MIR -3 259 19 485 328 71 0 chr1 189533842 189534025 -53130328 + MIR SINE MIR 11 206 -56 312 111 0 0 chr1 189534244 189534298 -53130055 + (T)n Simple_repeat Simple_repeat 1 54 0 7680 23 0 0 chr1 189534299 189535236 -53129117 - L1HS LINE L1 0 6155 5219 634 14 0 0 chr1 189535234 189535308 -53129045 + L1P LINE L1 4776 4849 -1297 * 348 381 181 18 chr1 189535436 189535717 -53128636 - L2 LINE L2 0 3272 2946 8594 163 77 47 chr1 189535819 189538374 -53125979 + L1MA8 LINE L1 3129 5790 -501 297 0 0 0 chr1 189538374 189538407 -53125946 + (CA)n Simple_repeat Simple_repeat 2 34 0 8594 163 77 47 chr1 189538407 189538912 -53125441 + L1MA8 LINE L1 5790 6279 -12 641 187 15 30 chr1 189538921 189539055 -53125298 + FLAM_C SINE Alu 1 132 -1 339 189 1 26 chr1 189539264 189539342 -53125011 - MER21A LTR ERV1 -784 79 3 530 198 159 8 chr1 189539344 189539470 -53124883 - MER21A-int LTR ERV1 0 4191 4047 21 36 0 0 chr1 189539707 189539735 -53124618 + AT_rich Low_complexity Low_complexity 1 28 0 767 292 50 70 chr1 189541043 189541444 -53122909 - L2 LINE L2 -6 3307 2915 3279 251 152 35 chr1 189541447 189542810 -53121543 + L2 LINE L2 1144 2666 -648 285 357 66 33 chr1 189542800 189543072 -53121281 + L2 LINE L2 3001 3281 -32 * 14473 122 36 28 chr1 189543075 189545469 -53118884 + Tigger1 DNA MER2_type 1 2414 -4 326 293 50 106 chr1 189545487 189545685 -53118668 - MER5A DNA MER1_type -1 188 2 213 121 0 0 chr1 189546269 189546302 -53118051 + (T)n Simple_repeat Simple_repeat 1 33 0 7747 20 0 0 chr1 189546303 189547237 -53117116 - L1PA3 LINE L1 -3 6152 5219 612 14 0 0 chr1 189547237 189547309 -53117044 + L1P LINE L1 4778 4849 -1297 348 381 181 18 chr1 189547437 189547718 -53116635 - L2 LINE L2 0 3272 2946 8594 163 77 47 chr1 189547820 189550375 -53113978 + L1MA8 LINE L1 3129 5790 -501 297 0 0 0 chr1 189550375 189550408 -53113945 + (CA)n Simple_repeat Simple_repeat 2 34 0 8594 163 77 47 chr1 189550408 189550913 -53113440 + L1MA8 LINE L1 5790 6279 -12 641 187 15 30 chr1 189550922 189551056 -53113297 + FLAM_C SINE Alu 1 132 -1 798 349 109 25 chr1 189551820 189552579 -53111774 + L2 LINE L2 2458 3271 -1 5183 161 39 28 chr1 189552748 189553752 -53110601 + L1P LINE L1 1 1015 -5131 3660 22 0 0 chr1 189553749 189554208 -53110145 - L1P LINE L1 -2793 3353 2895 * 14441 68 10 2 chr1 189554208 189556905 -53107448 + L1PA6 LINE L1 3434 6151 -3 207 400 0 17 chr1 189557115 189557230 -53107123 - MIR SINE MIR -133 129 17 377 252 36 65 chr1 189558628 189558767 -53105586 - MIR3 SINE MIR -3 205 71 26 88 0 0 chr1 189558780 189558848 -53105505 + AT_rich Low_complexity Low_complexity 1 68 0 1442 142 53 66 chr1 189558889 189559037 -53105316 + L1MA7 LINE L1 5988 6136 -155 231 61 0 0 chr1 189559037 189559070 -53105283 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2055 119 0 0 chr1 189559072 189559357 -53104996 - AluSx SINE Alu -27 285 1 1442 142 53 66 chr1 189559357 189559507 -53104846 + L1MA7 LINE L1 6137 6285 -6 25 75 0 0 chr1 189559507 189559560 -53104793 + AT_rich Low_complexity Low_complexity 1 53 0 563 28 0 0 chr1 189559592 189559664 -53104689 + L1PA6 LINE L1 6083 6154 0 659 184 38 51 chr1 189559667 189559825 -53104528 - AluJb SINE Alu -99 213 58 665 239 5 27 chr1 189559857 189560045 -53104308 - MLT2C1 LTR ERVL -212 185 2 405 278 97 0 chr1 189560066 189560242 -53104111 - HAL1 LINE L1 -861 1646 1454 606 277 72 46 chr1 189560380 189560879 -53103474 - L1MEd LINE L1 -4906 1213 702 1887 103 3 68 chr1 189560879 189561189 -53103164 - AluY SINE Alu 0 311 22 329 320 79 35 chr1 189561276 189561504 -53102849 - L1MEd LINE L1 -5443 676 439 23 0 0 0 chr1 189561923 189561946 -53102407 + AT_rich Low_complexity Low_complexity 1 23 0 432 297 31 0 chr1 189562280 189562408 -53101945 - MIR SINE MIR -7 255 124 291 194 107 117 chr1 189562794 189562897 -53101456 - L3 LINE CR1 -87 1490 1389 360 289 48 0 chr1 189563143 189563247 -53101106 + L2 LINE L2 3149 3257 -15 26 50 0 0 chr1 189564961 189565001 -53099352 + AT_rich Low_complexity Low_complexity 1 40 0 1100 182 30 0 chr1 189565133 189565336 -53099017 - MER3 DNA MER1_type 0 209 1 1630 175 0 4 chr1 189565507 189565775 -53098578 - AluJo SINE Alu -35 277 11 24 0 0 0 chr1 189566024 189566048 -53098305 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr1 189566091 189566123 -53098230 + AT_rich Low_complexity Low_complexity 1 32 0 1856 206 104 4 chr1 189566853 189567323 -53097030 + Charlie1b DNA MER1_type 7 523 0 198 380 47 16 chr1 189567341 189567470 -53096883 - L2 LINE L2 -842 2472 2340 873 232 59 43 chr1 189567489 189567860 -53096493 - LTR16A1 LTR ERVL -27 430 1 181 255 78 0 chr1 189568397 189568448 -53095905 + L2 LINE L2 3155 3209 -63 3130 125 50 9 chr1 189568453 189568918 -53095435 - MER1A DNA MER1_type 0 529 46 25 0 0 0 chr1 189570979 189571004 -53093349 + AT_rich Low_complexity Low_complexity 1 25 0 478 281 52 7 chr1 189571045 189571180 -53093173 - MIR SINE MIR -109 153 13 2245 84 7 0 chr1 189572641 189572940 -53091413 + AluY SINE Alu 1 301 -10 405 302 104 16 chr1 189572988 189573206 -53091147 + MIR SINE MIR 15 257 -5 26 50 0 0 chr1 189573921 189573961 -53090392 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr1 189574551 189574572 -53089781 + AT_rich Low_complexity Low_complexity 1 21 0 272 374 47 0 chr1 189575196 189575303 -53089050 - MIR SINE MIR -63 145 34 490 289 67 0 chr1 189576715 189576864 -53087489 - MIR SINE MIR -71 191 33 350 195 12 0 chr1 189577425 189577507 -53086846 + (CA)n Simple_repeat Simple_repeat 2 84 0 39 68 0 0 chr1 189578183 189578257 -53086096 + AT_rich Low_complexity Low_complexity 1 74 0 1060 202 133 0 chr1 189578599 189578894 -53085459 + MER33 DNA MER1_type 1 323 -1 196 359 68 17 chr1 189580692 189580809 -53083544 + L2 LINE L2 2768 2890 -424 290 278 90 32 chr1 189581143 189581358 -53082995 + MLT1J2 LTR MaLR 56 277 -169 541 282 17 0 chr1 189581948 189582065 -53082288 + L2 LINE L2 3154 3272 0 202 324 39 20 chr1 189582110 189582212 -53082141 + MER5A DNA MER1_type 85 188 -1 201 226 57 19 chr1 189584227 189584280 -53080073 + MIR SINE MIR 109 163 -99 21 0 0 0 chr1 189584602 189584623 -53079730 + AT_rich Low_complexity Low_complexity 1 21 0 22 88 0 0 chr1 189589953 189590010 -53074343 + AT_rich Low_complexity Low_complexity 1 57 0 497 108 0 36 chr1 189590478 189590561 -53073792 - MADE1 DNA Mariner 0 80 1 260 307 27 0 chr1 189593284 189593359 -53070994 - L2 LINE L2 -6 3307 3231 32 0 0 0 chr1 189593447 189593479 -53070874 + AT_rich Low_complexity Low_complexity 1 32 0 267 348 25 0 chr1 189593502 189593620 -53070733 - L2 LINE L2 0 3313 3193 340 22 0 0 chr1 189594844 189594890 -53069463 - AluY SINE Alu -3 305 260 250 358 112 22 chr1 189595963 189596097 -53068256 + L2 LINE L2 3127 3272 0 26 0 0 0 chr1 189596513 189596539 -53067814 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr1 189597029 189597063 -53067290 + AT_rich Low_complexity Low_complexity 1 34 0 275 312 77 72 chr1 189600716 189600937 -53063416 - L2 LINE L2 -792 2522 2301 361 303 14 42 chr1 189601164 189601306 -53063047 + MIR3 SINE MIR 65 202 -6 22 0 0 0 chr1 189601492 189601514 -53062839 + AT_rich Low_complexity Low_complexity 1 22 0 1235 285 93 12 chr1 189601516 189602029 -53062324 - L2 LINE L2 -5 3308 2757 199 314 0 0 chr1 189602128 189602179 -53062174 - L2 LINE L2 -507 2807 2757 642 300 70 8 chr1 189603003 189603246 -53061107 - MIR SINE MIR -3 259 2 1306 183 67 8 chr1 189604382 189604650 -53059703 - L1MC1 LINE L1 0 6333 6050 * 3329 203 25 9 chr1 189604634 189605406 -53058947 + L1MC/D LINE L1 4381 5164 -982 * 35123 36 1 2 chr1 189605393 189610515 -53053838 + L1PA3 LINE L1 1051 6167 0 2059 138 26 20 chr1 189610522 189610969 -53053384 + L1MC/D LINE L1 5153 5603 -730 1567 232 34 6 chr1 189611010 189611363 -53052990 - MLT1A1 LTR MaLR 0 365 3 353 241 58 11 chr1 189611526 189611613 -53052740 - MIR SINE MIR -102 160 70 * 446 263 0 10 chr1 189611612 189611711 -53052642 - L2 LINE L2 -26 3287 3190 379 342 25 25 chr1 189612093 189612251 -53052102 - MIR3 SINE MIR -7 201 44 37 69 0 0 chr1 189612496 189612568 -53051785 + AT_rich Low_complexity Low_complexity 1 72 0 282 235 35 12 chr1 189612589 189612674 -53051679 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 376 326 95 46 chr1 189612778 189613168 -53051185 + L2 LINE L2 2469 2877 -437 1098 298 59 14 chr1 189613553 189613979 -53050374 + ERVL LTR ERVL 4933 5377 -387 1032 232 115 31 chr1 189614130 189614453 -53049900 + LTR41 LTR ERVL 1 350 -423 233 252 219 0 chr1 189614518 189614637 -53049716 + LTR41 LTR ERVL 214 358 -415 1255 226 91 61 chr1 189614741 189615149 -53049204 + LTR41 LTR ERVL 348 767 -6 1406 178 3 27 chr1 189615518 189615811 -53048542 + AluJb SINE Alu 1 286 -16 391 18 18 18 chr1 189615811 189615868 -53048485 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 26 0 0 0 chr1 189616038 189616064 -53048289 + AT_rich Low_complexity Low_complexity 1 26 0 1900 157 7 3 chr1 189616144 189616449 -53047904 - AluJo SINE Alu -5 307 2 192 77 0 0 chr1 189616787 189616813 -53047540 + (A)n Simple_repeat Simple_repeat 1 26 0 415 347 73 20 chr1 189617249 189617497 -53046856 + MIR SINE MIR 2 262 0 2294 89 7 0 chr1 189619882 189620175 -53044178 - AluSx SINE Alu -16 296 2 2197 114 3 0 chr1 189621003 189621300 -53043053 + AluSq SINE Alu 1 298 -15 466 309 20 13 chr1 189621320 189621472 -53042881 - MIR SINE MIR 0 262 110 354 234 221 83 chr1 189621582 189621638 -53042715 + L2 LINE L2 2984 3031 -282 769 177 0 0 chr1 189621638 189621768 -53042585 + FLAM_A SINE Alu 1 130 -3 354 234 221 83 chr1 189621768 189622001 -53042352 + L2 LINE L2 3031 3313 0 204 227 80 53 chr1 189622527 189622602 -53041751 + MIR SINE MIR 66 142 -120 28 61 0 0 chr1 189622807 189622856 -53041497 + AT_rich Low_complexity Low_complexity 1 49 0 23 54 0 0 chr1 189623731 189623768 -53040585 + AT_rich Low_complexity Low_complexity 1 37 0 1917 112 4 8 chr1 189624000 189624268 -53040085 - AluSx SINE Alu -45 267 1 206 266 0 31 chr1 189624271 189624335 -53040018 + MER5A DNA MER1_type 128 189 0 21 0 0 0 chr1 189624645 189624666 -53039687 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr1 189626446 189626482 -53037871 + AT_rich Low_complexity Low_complexity 1 36 0 244 195 0 37 chr1 189626856 189626938 -53037415 + (CATATA)n Simple_repeat Simple_repeat 3 81 0 2070 128 7 0 chr1 189628479 189628777 -53035576 + AluSq SINE Alu 1 300 -13 2306 231 32 0 chr1 189630329 189630896 -53033457 + L1PB1 LINE L1 4789 5373 -773 841 108 7 7 chr1 189631014 189631153 -53033200 + L1PB1 LINE L1 5349 5487 -664 4254 124 1 9 chr1 189631315 189631983 -53032370 + L1PB1 LINE L1 5488 6150 -1 27 92 0 0 chr1 189632116 189632192 -53032161 + AT_rich Low_complexity Low_complexity 1 76 0 2558 58 0 7 chr1 189632600 189632910 -53031443 - AluY SINE Alu -3 308 1 1859 147 14 0 chr1 189634735 189635028 -53029325 + AluSx SINE Alu 1 297 -15 200 278 0 0 chr1 189635921 189635957 -53028396 - L2 LINE L2 -88 3184 3149 2022 65 4 0 chr1 189635974 189636222 -53028131 + AluY SINE Alu 44 292 -19 210 143 0 0 chr1 189636224 189636259 -53028094 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 662 314 203 10 chr1 189636260 189636997 -53027356 - L2 LINE L2 -134 3179 2291 236 196 20 0 chr1 189637063 189637114 -53027239 - L2 LINE L2 -975 2339 2288 3546 197 166 17 chr1 189638187 189639244 -53025109 - L1M3e LINE L1 -5822 1269 1 4077 199 23 16 chr1 189639379 189640234 -53024119 + L1M3e LINE L1 1179 2039 -4991 486 213 81 58 chr1 189640335 189640509 -53023844 - L1M3 LINE L1 -662 5518 5341 197 344 94 10 chr1 189640516 189640612 -53023741 - L2 LINE L2 -138 3134 3031 1409 209 12 18 chr1 189640675 189641010 -53023343 - L1M3 LINE L1 -799 5347 5015 1304 197 4 30 chr1 189641122 189641391 -53022962 - AluJo SINE Alu -11 301 40 234 398 10 36 chr1 189641841 189642037 -53022316 + L2 LINE L2 2719 2909 -405 2379 53 7 3 chr1 189642116 189642420 -53021933 + AluY SINE Alu 1 305 -6 223 241 253 0 chr1 189642428 189642511 -53021842 + MER5A DNA MER1_type 86 189 0 1708 163 0 14 chr1 189642958 189643240 -53021113 + AluJo SINE Alu 13 290 -22 664 64 64 23 chr1 189643468 189643639 -53020714 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 27 49 0 0 chr1 189643639 189643680 -53020673 + AT_rich Low_complexity Low_complexity 1 41 0 605 96 72 6 chr1 189643681 189643847 -53020506 + (TA)n Simple_repeat Simple_repeat 1 177 0 1987 100 57 4 chr1 189643891 189644170 -53020183 - AluSg SINE Alu -16 294 1 22 0 0 0 chr1 189644895 189644917 -53019436 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr1 189645599 189645637 -53018716 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr1 189646043 189646073 -53018280 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr1 189646229 189646259 -53018094 + AT_rich Low_complexity Low_complexity 1 30 0 264 342 137 37 chr1 189648701 189649519 -53014834 - L2 LINE L2 -1115 2199 1300 204 293 0 0 chr1 189649898 189649956 -53014397 + (CATA)n Simple_repeat Simple_repeat 4 61 0 408 294 113 23 chr1 189650104 189650281 -53014072 + MIR SINE MIR 20 212 -50 2162 110 25 27 chr1 189650561 189650926 -53013427 - THE1B LTR MaLR 0 364 1 2117 128 0 3 chr1 189651235 189651547 -53012806 + AluSx SINE Alu 1 311 -1 27 81 0 0 chr1 189651630 189651692 -53012661 + AT_rich Low_complexity Low_complexity 1 62 0 260 155 0 17 chr1 189651924 189651982 -53012371 + (TA)n Simple_repeat Simple_repeat 2 58 0 348 306 75 19 chr1 189653422 189653627 -53010726 - MIR3 SINE MIR -39 169 1 1972 140 10 7 chr1 189653904 189654212 -53010141 - AluSx SINE Alu -3 309 1 353 218 22 50 chr1 189654237 189654416 -53009937 + A-rich Low_complexity Low_complexity 2 175 0 1607 75 0 24 chr1 189654498 189654710 -53009643 + AluY SINE Alu 99 305 -6 26 30 0 0 chr1 189654924 189654957 -53009396 + AT_rich Low_complexity Low_complexity 1 33 0 1770 164 34 7 chr1 189655311 189655604 -53008749 + AluJo SINE Alu 1 301 -11 194 313 16 0 chr1 189656880 189656944 -53007409 - L3b LINE CR1 -200 1383 1319 315 265 130 37 chr1 189657061 189657223 -53007130 + MER5B DNA MER1_type 2 178 0 578 235 8 0 chr1 189658688 189658820 -53005533 - Charlie1 DNA MER1_type 0 2761 2629 * 866 256 39 4 chr1 189658810 189659040 -53005313 - Charlie1 DNA MER1_type -2519 242 5 677 255 83 80 chr1 189659218 189659520 -53004833 - MER102b DNA MER1_type -2 339 37 21 36 0 0 chr1 189659839 189659867 -53004486 + AT_rich Low_complexity Low_complexity 1 28 0 405 294 40 65 chr1 189660508 189660587 -53003766 + MIR SINE MIR 9 88 -174 1162 139 106 0 chr1 189660587 189660795 -53003558 + MER30 DNA MER1_type 1 230 0 405 294 40 65 chr1 189660795 189660916 -53003437 + MIR SINE MIR 88 204 -58 2087 118 0 3 chr1 189664418 189664715 -52999638 + AluSg SINE Alu 1 296 -14 30 0 0 0 chr1 189665036 189665066 -52999287 + AT_rich Low_complexity Low_complexity 1 30 0 225 301 68 27 chr1 189665515 189665588 -52998765 - L2 LINE L2 -182 3090 3015 2505 33 0 3 chr1 189665622 189665921 -52998432 - AluY SINE Alu -13 298 1 234 398 10 36 chr1 189666000 189666196 -52998157 - L2 LINE L2 -405 2909 2719 1304 197 4 30 chr1 189666646 189666915 -52997438 + AluJo SINE Alu 40 301 -11 1409 209 12 18 chr1 189667027 189667362 -52996991 + L1MB3 LINE L1 5015 5347 -799 197 344 94 10 chr1 189667425 189667521 -52996832 + L2 LINE L2 3031 3134 -138 2089 193 79 38 chr1 189667528 189667654 -52996699 + L1MB3 LINE L1 5341 5460 -723 189 0 0 0 chr1 189667654 189667675 -52996678 + (GAAAA)n Simple_repeat Simple_repeat 2 22 0 2089 193 79 38 chr1 189667675 189668077 -52996276 + L1MB3 LINE L1 5460 5891 -292 2774 157 48 29 chr1 189668201 189668789 -52995564 + L1MB3 LINE L1 5584 6182 -1 21 57 0 0 chr1 189668881 189668916 -52995437 + AT_rich Low_complexity Low_complexity 1 35 0 28 121 0 0 chr1 189669376 189669558 -52994795 + AT_rich Low_complexity Low_complexity 1 182 0 268 339 62 48 chr1 189670015 189670242 -52994111 + HAL1 LINE L1 5 234 -2273 1308 246 125 89 chr1 189670340 189670762 -52993591 + HAL1 LINE L1 776 1181 -1326 731 24 0 0 chr1 189670762 189670846 -52993507 + L1PA7 LINE L1 6060 6143 -11 1308 246 125 89 chr1 189670846 189671512 -52992841 + HAL1 LINE L1 1181 1903 -604 286 279 239 17 chr1 189672873 189673041 -52991312 - MIR SINE MIR -57 205 2 912 56 0 32 chr1 189673089 189673214 -52991139 - L1PA5 LINE L1 -15 6139 6019 331 335 164 14 chr1 189673340 189673839 -52990514 - L3 LINE CR1 -709 868 295 735 280 26 74 chr1 189673982 189674332 -52990021 + MER102b DNA MER1_type 9 341 0 276 30 0 0 chr1 189674510 189674543 -52989810 + (CA)n Simple_repeat Simple_repeat 2 34 0 245 264 114 29 chr1 189676884 189677024 -52987329 + L1ME4a LINE L1 5965 6116 -5 1889 104 79 0 chr1 189677387 189677665 -52986688 + AluSc SINE Alu 1 300 -9 1756 120 112 0 chr1 189677934 189678210 -52986143 - AluSc SINE Alu -2 307 1 189 74 0 0 chr1 189678586 189678613 -52985740 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 587 228 15 44 chr1 189678761 189678897 -52985456 - L2 LINE L2 0 3313 3182 25 31 0 0 chr1 189678989 189679021 -52985332 + AT_rich Low_complexity Low_complexity 1 32 0 228 143 0 0 chr1 189680125 189680167 -52984186 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 1350 192 63 22 chr1 189680167 189680438 -52983915 - AluJo SINE Alu -30 282 1 22 0 0 0 chr1 189680445 189680467 -52983886 + AT_rich Low_complexity Low_complexity 1 22 0 248 282 39 26 chr1 189681079 189681157 -52983196 - MER5A DNA MER1_type 0 189 111 1869 231 117 29 chr1 189682490 189683147 -52981206 + L1MEc LINE L1 26 740 -5656 689 202 97 19 chr1 189683142 189683399 -52980954 + L1MEc LINE L1 2761 3037 -3178 * 577 222 79 28 chr1 189683387 189683639 -52980714 + L1M4 LINE L1 5122 5386 -760 * 615 271 86 41 chr1 189683871 189684227 -52980126 - L2 LINE L2 -215 3098 2725 288 374 65 0 chr1 189684424 189684563 -52979790 - MIR3 SINE MIR -6 202 55 357 297 79 54 chr1 189685625 189685817 -52978536 + MIR SINE MIR 17 206 -56 327 279 107 70 chr1 189686277 189686492 -52977861 + L1MEc LINE L1 30 252 -6144 377 206 21 21 chr1 189686786 189686883 -52977470 + LTR40b LTR ERVL 1 97 -365 3995 101 12 161 chr1 189687025 189687498 -52976855 - Tigger1 DNA MER2_type 0 2418 1999 655 214 0 0 chr1 189687498 189687624 -52976729 + FLAM_A SINE Alu 1 126 -16 3995 101 12 161 chr1 189687624 189687930 -52976423 - Tigger1 DNA MER2_type -419 1999 1649 2122 118 0 3 chr1 189689394 189689691 -52974662 + AluSg SINE Alu 1 296 -14 30 0 0 0 chr1 189690012 189690042 -52974311 + AT_rich Low_complexity Low_complexity 1 30 0 231 301 68 27 chr1 189690491 189690564 -52973789 - L2 LINE L2 -182 3090 3015 2383 71 0 0 chr1 189690598 189690895 -52973458 - AluY SINE Alu -13 298 2 350 173 0 25 chr1 189692081 189692162 -52972191 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 683 281 63 13 chr1 189692233 189692471 -52971882 + L2 LINE L2 2621 2870 -444 301 204 63 49 chr1 189692525 189692688 -52971665 - L1P3 LINE L1 -334 5820 5651 666 246 117 57 chr1 189692707 189693475 -52970878 - L1MEd LINE L1 -4521 1608 774 31 44 0 0 chr1 189693858 189693903 -52970450 + AT_rich Low_complexity Low_complexity 1 45 0 30 45 0 0 chr1 189694314 189694358 -52969995 + AT_rich Low_complexity Low_complexity 1 44 0 44 46 0 0 chr1 189696465 189696530 -52967823 + AT_rich Low_complexity Low_complexity 1 65 0 500 137 0 0 chr1 189696709 189696782 -52967571 + MER5A DNA MER1_type 4 76 -113 2439 74 0 16 chr1 189696782 189697094 -52967259 + AluY SINE Alu 1 307 -4 26 30 0 0 chr1 189697308 189697341 -52967012 + AT_rich Low_complexity Low_complexity 1 33 0 1797 164 34 7 chr1 189697695 189697988 -52966365 + AluJo SINE Alu 1 301 -11 29 28 0 0 chr1 189699231 189699267 -52965086 + AT_rich Low_complexity Low_complexity 1 36 0 1277 71 0 0 chr1 189699598 189699753 -52964600 - AluY SINE Alu -16 295 141 1783 234 36 34 chr1 189699758 189700288 -52964065 - L1MA9 LINE L1 -30 6282 5752 268 225 141 0 chr1 189700286 189700357 -52963996 + L1M2 LINE L1 5608 5688 -624 * 1473 171 13 0 chr1 189700364 189700598 -52963755 + AluJo SINE Alu 9 245 -67 23 0 0 0 chr1 189700600 189700623 -52963730 + AT_rich Low_complexity Low_complexity 1 23 0 396 257 71 9 chr1 189700780 189700893 -52963460 - L2 LINE L2 -8 3305 3186 210 234 21 0 chr1 189701243 189701290 -52963063 + L2 LINE L2 3223 3270 -2 525 301 100 13 chr1 189701449 189701688 -52962665 + MIR SINE MIR 3 262 0 189 0 0 0 chr1 189702063 189702084 -52962269 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 707 176 0 22 chr1 189703426 189703562 -52960791 - FLAM_C SINE Alu 0 133 1 2063 142 0 13 chr1 189704111 189704421 -52959932 - AluSx SINE Alu -6 306 1 519 288 48 0 chr1 189705287 189705433 -52958920 + MIR SINE MIR 88 240 -22 183 42 0 0 chr1 189705442 189705466 -52958887 + (CTG)n Simple_repeat Simple_repeat 2 25 0 * 821 129 0 0 chr1 189705464 189705604 -52958749 + (TCC)n Simple_repeat Simple_repeat 3 142 0 888 132 0 10 chr1 189707934 189708244 -52956109 + (TA)n Simple_repeat Simple_repeat 1 308 0 1988 137 0 3 chr1 189708246 189708539 -52955814 - AluSx SINE Alu -15 297 6 1764 159 14 10 chr1 189709873 189710162 -52954191 + AluJb SINE Alu 1 290 -22 343 334 152 49 chr1 189712269 189712697 -52951656 + L1M2 LINE L1 773 1244 -5605 191 250 62 0 chr1 189713577 189713625 -52950728 - MIR SINE MIR -94 168 118 185 307 148 20 chr1 189714190 189714291 -52950062 + MIR SINE MIR 78 191 -71 190 93 23 23 chr1 189715111 189715154 -52949199 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 725 293 80 39 chr1 189715173 189715725 -52948628 - L1MEd LINE L1 -3433 2696 2146 1842 156 6 19 chr1 189715725 189716040 -52948313 + AluSx SINE Alu 1 311 -1 725 293 80 39 chr1 189716040 189716305 -52948048 - L1MEd LINE L1 -3983 2146 1893 972 270 134 17 chr1 189716457 189717465 -52946888 - L1MEd LINE L1 -4717 1593 446 2299 75 0 0 chr1 189717655 189717934 -52946419 - AluSc SINE Alu -8 301 23 24 32 0 0 chr1 189718465 189718496 -52945857 + AT_rich Low_complexity Low_complexity 1 31 0 233 237 40 0 chr1 189720456 189720532 -52943821 - HAL1 LINE L1 -628 1879 1801 1892 147 14 0 chr1 189721541 189721834 -52942519 + AluSx SINE Alu 1 297 -15 200 278 0 0 chr1 189722727 189722763 -52941590 - L2 LINE L2 -88 3184 3149 2067 60 4 0 chr1 189722780 189723028 -52941325 + AluY SINE Alu 44 292 -19 232 109 0 0 chr1 189723034 189723080 -52941273 - LTR66 LTR ERVL -171 439 394 682 312 203 10 chr1 189723104 189723841 -52940512 - L2 LINE L2 -134 3179 2291 236 196 20 0 chr1 189723907 189723958 -52940395 - L2 LINE L2 -975 2339 2288 7940 201 90 20 chr1 189725168 189727119 -52937234 + L1M4c LINE L1 1 2143 -4948 4482 175 11 49 chr1 189727113 189727599 -52936754 - L1MA9 LINE L1 -48 6264 5761 * 1857 142 25 38 chr1 189727599 189727915 -52936438 - AluJb SINE Alu 0 312 1 4482 175 11 49 chr1 189727915 189728115 -52936238 - L1MA9 LINE L1 -551 5761 5621 2482 85 0 0 chr1 189728115 189728422 -52935931 - AluY SINE Alu -4 307 1 4482 175 11 49 chr1 189728422 189728672 -52935681 - L1MA9 LINE L1 -691 5621 5363 950 242 58 21 chr1 189728668 189729154 -52935199 + L1M4c LINE L1 2875 3380 -3787 * 1274 117 0 0 chr1 189729154 189729325 -52935028 + AluSp SINE Alu 134 304 -9 1856 257 34 25 chr1 189729325 189729882 -52934471 + L1M4c LINE L1 3379 3940 -3227 195 42 0 0 chr1 189729889 189729913 -52934440 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 5057 142 11 6 chr1 189729914 189730729 -52933624 - L1PA15 LINE L1 -9 6156 5338 1690 205 0 0 chr1 189730729 189731031 -52933322 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr1 189731158 189731186 -52933167 + AT_rich Low_complexity Low_complexity 1 28 0 336 153 111 0 chr1 189731296 189731368 -52932985 - L1MA8 LINE L1 -26 6265 6186 527 313 33 14 chr1 189731368 189731582 -52932771 - L1MC/D LINE L1 -2083 5725 5508 387 269 112 25 chr1 189731646 189731843 -52932510 - L1MC/D LINE L1 -745 5401 5188 22 88 0 0 chr1 189732459 189732516 -52931837 + AT_rich Low_complexity Low_complexity 1 57 0 369 0 0 0 chr1 189733119 189733160 -52931193 + (TG)n Simple_repeat Simple_repeat 2 42 0 223 261 0 0 chr1 189733163 189733209 -52931144 + polypurine Low_complexity Low_complexity 1 46 0 378 301 100 32 chr1 189734022 189734331 -52930022 - MER102a DNA MER1_type 0 330 1 228 111 0 0 chr1 189738873 189738909 -52925444 + (CA)n Simple_repeat Simple_repeat 2 37 0 218 345 161 30 chr1 189739598 189739995 -52924358 + L2 LINE L2 2066 2514 -800 182 189 0 27 chr1 189740074 189740111 -52924242 - MER5A DNA MER1_type -26 163 128 656 299 102 16 chr1 189740221 189740592 -52923761 - MLT1L LTR MaLR -63 552 150 477 267 20 0 chr1 189741107 189741208 -52923145 + MER119 DNA MER1_type 1 103 -480 703 79 0 10 chr1 189741302 189741403 -52922950 - L1PA8A LINE L1 -191 5940 5841 32 26 0 0 chr1 189741629 189741668 -52922685 + AT_rich Low_complexity Low_complexity 1 39 0 925 156 26 19 chr1 189741868 189742119 -52922234 - MER2 DNA MER2_type -28 317 27 239 202 37 0 chr1 189742124 189742233 -52922120 + (TA)n Simple_repeat Simple_repeat 2 114 0 180 0 0 0 chr1 189742360 189742380 -52921973 + (T)n Simple_repeat Simple_repeat 1 20 0 1480 159 85 19 chr1 189742419 189742690 -52921663 + AluJb SINE Alu 1 289 -23 23 68 0 0 chr1 189743201 189743245 -52921108 + AT_rich Low_complexity Low_complexity 1 44 0 278 208 28 208 chr1 189743363 189743541 -52920812 + MIR SINE MIR 114 259 -3 261 0 0 0 chr1 189744619 189744648 -52919705 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr1 189744865 189744887 -52919466 + AT_rich Low_complexity Low_complexity 1 22 0 223 309 55 27 chr1 189745470 189745580 -52918773 - L2 LINE L2 -456 2858 2746 562 270 13 19 chr1 189745728 189745913 -52918440 + L1ME2 LINE L1 5990 6167 -3 227 225 0 0 chr1 189745914 189745954 -52918399 - MER94 DNA DNA -94 40 1 556 307 32 11 chr1 189745955 189746144 -52918209 - L2 LINE L2 -553 2761 2569 181 289 19 0 chr1 189746645 189746697 -52917656 + L2 LINE L2 3206 3258 -14 642 250 89 45 chr1 189746822 189747046 -52917307 - MIR SINE MIR -19 243 10 2078 110 0 4 chr1 189747502 189747807 -52916546 + AluSg SINE Alu 3 306 0 638 121 10 0 chr1 189748305 189748404 -52915949 - HY3 scRNA scRNA -1 100 1 189 378 12 0 chr1 189749137 189749219 -52915134 + L2 LINE L2 1893 1975 -1339 503 326 118 14 chr1 189749535 189749756 -52914597 + MIR SINE MIR 19 262 0 772 301 5 9 chr1 189749763 189749982 -52914371 + MIR SINE MIR 2 219 -43 207 343 97 29 chr1 189750024 189750231 -52914122 + L2 LINE L2 2260 2480 -834 5831 180 6 5 chr1 189750235 189751352 -52913001 + L1MB1 LINE L1 3894 5011 -1135 2196 136 11 37 chr1 189751749 189752123 -52912230 - THE1B LTR MaLR 0 364 1 412 196 82 0 chr1 189752407 189752504 -52911849 - L2 LINE L2 -1 3312 3208 5071 147 29 28 chr1 189753601 189754101 -52910252 + L1MB1 LINE L1 5004 5502 -666 180 77 0 0 chr1 189754101 189754127 -52910226 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5071 147 29 28 chr1 189754127 189754799 -52909554 + L1MB1 LINE L1 5502 6168 0 307 394 46 13 chr1 189754799 189755101 -52909252 + L2 LINE L2 2530 2841 -473 23 33 0 0 chr1 189756630 189756660 -52907693 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 189756705 189756726 -52907627 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 189758145 189758173 -52906180 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr1 189759144 189759172 -52905181 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr1 189759595 189759642 -52904711 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr1 189759987 189760018 -52904335 + AT_rich Low_complexity Low_complexity 1 31 0 232 364 70 56 chr1 189760428 189760714 -52903639 - L2 LINE L2 -7 3265 2976 192 125 0 0 chr1 189760748 189760780 -52903573 + (A)n Simple_repeat Simple_repeat 1 32 0 19791 107 20 18 chr1 189761266 189765203 -52899150 + L1PA8A LINE L1 2168 6103 -28 385 216 52 30 chr1 189765881 189766015 -52898338 + MER31-int LTR ERV1 1310 1446 -3490 2023 134 7 0 chr1 189766641 189766948 -52897405 - AluSx SINE Alu -3 309 1 216 135 0 0 chr1 189766968 189767005 -52897348 + (A)n Simple_repeat Simple_repeat 1 37 0 467 285 36 0 chr1 189767014 189767179 -52897174 - Charlie1 DNA MER1_type -29 2732 2562 181 293 147 0 chr1 189767455 189767530 -52896823 + L2 LINE L2 1291 1376 -1938 1242 187 7 53 chr1 189767636 189767920 -52896433 + AluJb SINE Alu 14 284 -28 493 283 118 28 chr1 189768530 189768742 -52895611 + MIR SINE MIR 18 248 -14 278 315 0 0 chr1 189768954 189769027 -52895326 + MIR3 SINE MIR 120 192 -16 22 0 0 0 chr1 189769305 189769327 -52895026 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 189769388 189769411 -52894942 + AT_rich Low_complexity Low_complexity 1 23 0 6105 130 27 13 chr1 189769958 189771187 -52893166 + L1MA5 LINE L1 5011 6251 -49 480 92 85 0 chr1 189771218 189771359 -52892994 + (TA)n Simple_repeat Simple_repeat 2 154 0 36811 26 18 140 chr1 189771377 189778387 -52885966 + L1HS LINE L1 1 6133 -22 9585 198 13 18 chr1 189778487 189780619 -52883734 + L1P LINE L1 2645 4765 -1381 375 218 327 20 chr1 189980619 189980867 -52683486 - L1MD2 LINE L1 -38 6321 5998 240 287 50 0 chr1 189980962 189981063 -52683290 + MER112 DNA MER1_type 149 254 -6 206 189 0 19 chr1 189983022 189983075 -52681278 + CT-rich Low_complexity Low_complexity 1 52 0 12309 27 39 0 chr1 189983887 189986066 -52678287 + L1PA6 LINE L1 3927 6138 -16 23 33 0 0 chr1 189986431 189986461 -52677892 + AT_rich Low_complexity Low_complexity 1 30 0 2380 84 0 3 chr1 189986948 189987246 -52677107 + AluSx SINE Alu 1 297 -15 5311 165 19 10 chr1 189988215 189989180 -52675173 - L1M1 LINE L1 -6577 988 16 2076 104 4 0 chr1 189989339 189989648 -52674705 + AluSg SINE Alu 1 310 0 632 209 35 99 chr1 189989695 189989896 -52674457 + AluJo SINE Alu 1 188 -124 236 144 56 33 chr1 189990111 189990201 -52674152 + (CACAC)n Simple_repeat Simple_repeat 4 95 0 3272 198 168 16 chr1 189990311 189991358 -52672995 - L1M3e LINE L1 -5824 1206 1 4133 198 22 16 chr1 189991499 189992397 -52671956 + L1MB3 LINE L1 1179 2082 -4948 876 196 9 18 chr1 189992391 189992610 -52671743 - L1MA9 LINE L1 -48 6264 6048 * 35 24 0 0 chr1 189993229 189993271 -52671082 + GC_rich Low_complexity Low_complexity 1 42 0 20449 90 7 21 chr1 189996071 189999222 -52665131 + L1P LINE L1 2078 5183 -963 2246 84 0 0 chr1 189999222 189999529 -52664824 + AluY SINE Alu 2 308 0 20449 90 7 21 chr1 189999529 189999591 -52664762 + L1P LINE L1 5183 5244 -902 8557 214 31 59 chr1 189999711 190000170 -52664183 + L1MB3 LINE L1 3100 3570 -3573 2111 148 0 0 chr1 190000170 190000475 -52663878 + AluSx SINE Alu 1 305 -7 8557 214 31 59 chr1 190000475 190003031 -52661322 + L1MB3 LINE L1 3570 6197 -946 1929 116 0 8 chr1 190003031 190003299 -52661054 + AluSx SINE Alu 39 304 -8 8557 214 31 59 chr1 190003299 190003310 -52661043 + L1MB3 LINE L1 6197 6207 -936 233 170 21 0 chr1 190003310 190003357 -52660996 + Alu SINE Alu 1 48 -254 8557 214 31 59 chr1 190003357 190004446 -52659907 + L1MB3 LINE L1 6207 7141 -2 201 299 171 0 chr1 190004810 190004927 -52659426 - MIR SINE MIR -2 260 124 499 212 0 0 chr1 190005247 190005346 -52659007 - L1ME3A LINE L1 -56 6114 6016 623 198 47 41 chr1 190005401 190005573 -52658780 - L1ME3A LINE L1 -400 5770 5598 2346 117 6 14 chr1 190005573 190005931 -52658422 + THE1A LTR MaLR 1 355 0 9954 86 10 2 chr1 190005931 190007325 -52657028 + THE1A-int LTR MaLR 1 1405 -175 1037 83 96 0 chr1 190007425 190007582 -52656771 + THE1A LTR MaLR 184 355 0 33 43 0 0 chr1 190008142 190008189 -52656164 + AT_rich Low_complexity Low_complexity 1 47 0 264 59 0 0 chr1 190008643 190008677 -52655676 + (GA)n Simple_repeat Simple_repeat 2 35 0 582 247 20 13 chr1 190009561 190009711 -52654642 + MIR SINE MIR 112 262 0 289 355 27 0 chr1 190009711 190009821 -52654532 + L3 LINE CR1 1406 1518 -59 406 283 28 21 chr1 190010133 190010278 -52654075 + L1MC/D LINE L1 5447 5592 -2216 439 128 23 0 chr1 190010966 190011052 -52653301 + CT-rich Low_complexity Low_complexity 3 90 0 1997 164 0 0 chr1 190011417 190011755 -52652598 - AluSx SINE Alu 0 338 1 393 227 136 20 chr1 190011873 190012071 -52652282 - L1MC5 LINE L1 -138 7823 7603 1199 185 49 92 chr1 190012157 190012605 -52651748 - L1MC5 LINE L1 -625 7336 6908 1099 93 0 25 chr1 190012605 190012766 -52651587 - AluSq SINE Alu -9 304 148 236 206 41 14 chr1 190012777 190012850 -52651503 + G-rich Low_complexity Low_complexity 2 76 0 1776 170 14 0 chr1 190012968 190013257 -52651096 - AluJo SINE Alu -19 293 1 275 310 186 13 chr1 190013841 190014067 -52650286 - MLT1K LTR MaLR -8 580 316 180 0 0 0 chr1 190014084 190014104 -52650249 + (A)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr1 190014809 190014834 -52649519 + AT_rich Low_complexity Low_complexity 1 25 0 386 336 123 47 chr1 190015509 190016086 -52648267 + L2 LINE L2 1910 2530 -784 209 259 0 19 chr1 190016228 190016282 -52648071 - L2 LINE L2 -16 3297 3245 326 261 59 194 chr1 190016295 190016686 -52647667 + L2 LINE L2 2935 3272 0 184 349 64 9 chr1 190017864 190017973 -52646380 + L2 LINE L2 3192 3306 -7 620 295 78 29 chr1 190017974 190018218 -52646135 + MIR SINE MIR 7 262 0 443 315 44 15 chr1 190018719 190018989 -52645364 - MLT1L LTR MaLR -8 607 330 1233 165 3 128 chr1 190018991 190019319 -52645034 + MSTB LTR MaLR 1 287 -139 960 149 11 11 chr1 190019429 190019603 -52644750 + MSTB LTR MaLR 253 426 -6 939 184 49 97 chr1 190019816 190020260 -52644093 + MLT1A1 LTR MaLR 1 365 0 306 283 53 7 chr1 190020372 190020524 -52643829 - L1ME3A LINE L1 -230 5940 5782 237 196 20 0 chr1 190021782 190021833 -52642520 + L2 LINE L2 2288 2339 -975 675 314 203 10 chr1 190021899 190022636 -52641717 + L2 LINE L2 2291 3179 -134 210 143 0 0 chr1 190022637 190022672 -52641681 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2052 65 4 0 chr1 190022674 190022922 -52641431 - AluY SINE Alu -19 292 44 199 278 0 0 chr1 190022939 190022975 -52641378 + L2 LINE L2 3149 3184 -88 6830 52 23 3 chr1 190023805 190025398 -52638955 + L1PA7 LINE L1 4543 6154 0 22 0 0 0 chr1 190026050 190026072 -52638281 + AT_rich Low_complexity Low_complexity 1 22 0 948 259 40 16 chr1 190026111 190026362 -52637991 - MIR SINE MIR 0 262 6 489 316 75 0 chr1 190026360 190026534 -52637819 - MIR SINE MIR -61 201 15 * 180 355 32 0 chr1 190026705 190026798 -52637555 - L3 LINE CR1 -736 841 746 405 106 0 0 chr1 190026805 190026871 -52637482 + MER41A LTR ERV1 401 466 -88 207 243 43 0 chr1 190026956 190026970 -52637383 + GA-rich Low_complexity Low_complexity 2 14 -60 1871 149 14 7 chr1 190026970 190027266 -52637087 + AluJb SINE Alu 1 298 -14 207 243 43 0 chr1 190027266 190027321 -52637032 + GA-rich Low_complexity Low_complexity 14 74 0 315 0 0 0 chr1 190028084 190028119 -52636234 + (CA)n Simple_repeat Simple_repeat 2 36 0 2256 119 36 30 chr1 190028348 190028710 -52635643 + THE1B LTR MaLR 1 364 0 381 300 41 41 chr1 190028867 190029037 -52635316 + L2 LINE L2 3109 3278 -35 24 32 0 0 chr1 190029657 190029688 -52634665 + AT_rich Low_complexity Low_complexity 1 31 0 261 119 0 0 chr1 190032974 190033016 -52631337 + (TG)n Simple_repeat Simple_repeat 2 43 0 249 108 0 0 chr1 190037856 190037893 -52626460 + (TCC)n Simple_repeat Simple_repeat 1 37 0 242 281 0 0 chr1 190038022 190038111 -52626242 + C-rich Low_complexity Low_complexity 1 89 0 222 260 0 0 chr1 190038131 190038231 -52626122 + C-rich Low_complexity Low_complexity 1 100 0 356 303 34 0 chr1 190038652 190038771 -52625582 + CT-rich Low_complexity Low_complexity 2 124 0 261 130 0 22 chr1 190040156 190040202 -52624151 + (TG)n Simple_repeat Simple_repeat 2 46 0 25 31 0 0 chr1 190042615 190042647 -52621706 + AT_rich Low_complexity Low_complexity 1 32 0 1926 147 14 0 chr1 190043713 190044006 -52620347 - AluSx SINE Alu -15 297 1 239 237 40 0 chr1 190045015 190045091 -52619262 + HAL1 LINE L1 1801 1879 -628 24 32 0 0 chr1 190047051 190047082 -52617271 + AT_rich Low_complexity Low_complexity 1 31 0 2355 72 0 0 chr1 190047613 190047892 -52616461 + AluSc SINE Alu 23 301 -8 984 266 145 21 chr1 190048082 190049015 -52615338 + L1MEd LINE L1 446 1517 -4793 1661 210 21 22 chr1 190049115 190049566 -52614787 - MER52A LTR ERV1 -1042 713 205 255 210 81 0 chr1 190050079 190050141 -52614212 - MER52A LTR ERV1 -1688 67 1 1187 211 84 19 chr1 190050141 190050568 -52613785 - L1 LINE L1 -2803 3579 3125 * 17735 214 29 35 chr1 190050561 190053293 -52611060 + L1PA15 LINE L1 841 3589 -3995 254 146 0 0 chr1 190053293 190053334 -52611019 + MER4E LTR ERV1 652 692 -74 17735 214 29 35 chr1 190053334 190056178 -52608175 + L1PA15 LINE L1 3589 6424 -1160 2244 104 3 3 chr1 190056178 190056477 -52607876 + AluSg SINE Alu 2 300 -10 17735 214 29 35 chr1 190056477 190056838 -52607515 + L1PA15 LINE L1 6424 6786 -798 192 97 0 0 chr1 190056840 190056871 -52607482 + (TCTCTG)n Simple_repeat Simple_repeat 5 35 0 22 0 0 0 chr1 190056871 190056893 -52607460 + GC_rich Low_complexity Low_complexity 1 22 0 1723 205 0 0 chr1 190056893 190057195 -52607158 - AluJb SINE Alu -10 302 1 4897 157 11 6 chr1 190057195 190058035 -52606318 + L1PA15 LINE L1 6776 7619 0 1890 253 34 25 chr1 190058042 190058599 -52605754 - L1 LINE L1 -3227 3155 2594 1260 120 0 0 chr1 190058599 190058766 -52605587 - AluSp SINE Alu -13 300 134 965 242 60 23 chr1 190058766 190059252 -52605101 - L1 LINE L1 -3787 2595 2090 * 2388 145 0 71 chr1 190059248 190059498 -52604855 + L1M2 LINE L1 5363 5568 -723 2432 83 0 29 chr1 190059498 190059811 -52604542 + AluY SINE Alu 1 304 -7 2388 145 0 71 chr1 190059811 190060009 -52604344 + L1M2 LINE L1 5568 5779 -512 723 138 23 23 chr1 190060010 190060140 -52604213 + AluJb SINE Alu 1 130 -182 230 189 91 8 chr1 190060288 190060420 -52603933 + (CACAA)n Simple_repeat Simple_repeat 1 143 0 4377 154 66 15 chr1 190060549 190061414 -52602939 + L1MA9 LINE L1 5402 6310 -2 183 349 47 38 chr1 190061997 190062209 -52602144 + L2 LINE L2 2467 2680 -634 433 234 106 21 chr1 190062519 190062660 -52601693 + MLT1L LTR MaLR 124 276 -339 1180 266 45 117 chr1 190062732 190063377 -52600976 + L1ME3A LINE L1 102 792 -5337 2546 74 0 0 chr1 190063377 190063688 -52600665 + AluY SINE Alu 1 311 0 1180 266 45 117 chr1 190063688 190063814 -52600539 + L1ME3A LINE L1 792 925 -5204 1962 147 16 104 chr1 190063814 190064256 -52600097 - MER57A LTR ERV1 0 403 1 1180 266 45 117 chr1 190064256 190064492 -52599861 + L1ME3A LINE L1 925 1176 -4953 770 208 0 0 chr1 190064492 190064622 -52599731 + FLAM_A SINE Alu 4 133 0 1180 266 45 117 chr1 190064622 190064822 -52599531 + L1ME3A LINE L1 1176 1169 -4960 1999 133 0 32 chr1 190064822 190065131 -52599222 + AluSx SINE Alu 1 299 -13 1180 266 45 117 chr1 190065131 190065471 -52598882 + L1ME3A LINE L1 1168 1531 -4598 545 247 62 4 chr1 190066029 190066256 -52598097 + L1ME3A LINE L1 2205 2444 -3685 * 1647 282 75 38 chr1 190066254 190067870 -52596483 + L1ME3A LINE L1 3951 5622 -531 1997 145 45 3 chr1 190067884 190068215 -52596138 + MLT1A1 LTR MaLR 19 363 -2 523 215 54 13 chr1 190068311 190068460 -52595893 + L1ME3A LINE L1 5775 5929 -224 1817 144 134 36 chr1 190068630 190069018 -52595335 + MSTA LTR MaLR 3 428 0 12214 124 13 1 chr1 190069059 190070895 -52593458 + L1P3 LINE L1 1 1838 -4613 4501 49 2 14 chr1 190070995 190071566 -52592787 + L1P LINE L1 204 767 -5379 7920 16 5 0 chr1 190071601 190073152 -52591201 + L1PA3 LINE L1 4600 6154 -1 3174 173 43 38 chr1 190073153 190073280 -52591073 + L1M2 LINE L1 3572 3697 -2449 2105 122 0 0 chr1 190073280 190073583 -52590770 + AluSc SINE Alu 1 303 0 3174 173 43 38 chr1 190073583 190074134 -52590219 + L1M2 LINE L1 3697 4255 -1891 288 182 0 0 chr1 190074143 190074198 -52590155 - MLT1A1 LTR MaLR -12 384 330 1890 102 64 24 chr1 190074198 190074383 -52589970 - AluSp SINE Alu -1 312 109 3581 15 2 5 chr1 190074383 190074827 -52589526 - L1PA2 LINE L1 0 6155 5740 1890 102 64 24 chr1 190074827 190074936 -52589417 - AluSp SINE Alu -204 109 6 1200 225 36 52 chr1 190074942 190075249 -52589104 - MLT1A1 LTR MaLR -63 302 1 2002 156 1 13 chr1 190075252 190075696 -52588657 + L1M2 LINE L1 4252 5718 -573 2658 154 17 30 chr1 190076332 190076794 -52587559 + LTR32 LTR ERVL 15 470 -1 1470 76 178 0 chr1 190078179 190078404 -52585949 - Tigger2a DNA MER2_type -169 265 1 662 326 105 23 chr1 190078445 190078869 -52585484 - LTR16B LTR ERVL -12 452 19 5754 91 1 4 chr1 190079381 190080162 -52584191 + L1PA13 LINE L1 5384 6162 -1 2166 111 7 10 chr1 190080394 190080700 -52583653 - AluSp SINE Alu -8 305 1 542 278 22 65 chr1 190080923 190081153 -52583200 - MER102b DNA MER1_type 0 341 122 191 200 0 20 chr1 190081388 190081438 -52582915 + CT-rich Low_complexity Low_complexity 4 52 0 1913 112 3 24 chr1 190082122 190082418 -52581935 - L1PA16 LINE L1 -11 6155 5866 939 81 0 8 chr1 190082420 190082543 -52581810 + L1PA16 LINE L1 5762 5883 -283 238 240 0 139 chr1 190082737 190082866 -52581487 - L2 LINE L2 -5 3308 3198 765 147 8 0 chr1 190082875 190083004 -52581349 - MER3 DNA MER1_type 0 209 80 769 270 6 6 chr1 190083065 190083239 -52581114 - MER58A DNA MER1_type -44 180 7 264 164 15 30 chr1 190083354 190083421 -52580932 + MLT1F LTR MaLR 470 535 -7 416 369 54 29 chr1 190083517 190083758 -52580595 + L2 LINE L2 3018 3264 -8 1884 131 3 61 chr1 190083919 190084248 -52580105 + AluSx SINE Alu 1 310 -2 658 347 48 18 chr1 190085260 190085809 -52578544 + ERVL LTR ERVL 2481 3032 -1964 2071 128 3 0 chr1 190085839 190086127 -52578226 - AluSx SINE Alu -23 289 1 307 282 64 0 chr1 190086272 190086382 -52577971 + ERVL LTR ERVL 3235 3351 -2303 710 340 58 24 chr1 190086426 190086893 -52577460 + ERVL LTR ERVL 3375 3857 -1907 1298 308 90 27 chr1 190087354 190087650 -52576703 + L1MEc LINE L1 39 315 -6081 194 62 31 0 chr1 190087650 190087682 -52576671 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1298 308 90 27 chr1 190087682 190088132 -52576221 + L1MEc LINE L1 315 832 -5564 497 277 100 21 chr1 190088386 190088532 -52575821 + L1MC5 LINE L1 6562 6695 -1113 1838 172 27 33 chr1 190088532 190088898 -52575455 + THE1B LTR MaLR 1 364 0 497 277 100 21 chr1 190088898 190089060 -52575293 + L1MC5 LINE L1 6695 6860 -948 543 67 0 27 chr1 190089061 190089136 -52575217 + Alu SINE Alu 2 74 -244 8158 124 28 2 chr1 190089239 190090513 -52573840 + L1M1 LINE L1 1343 2649 -4916 3579 84 13 2 chr1 190090518 190091044 -52573309 + L1MA3 LINE L1 5767 6298 -7 1846 217 77 99 chr1 190091049 190091438 -52572915 + Charlie2a DNA MER1_type 1563 1959 -903 1006 107 59 27 chr1 190091438 190091625 -52572728 - L1MA8 LINE L1 0 6291 6099 1846 217 77 99 chr1 190091625 190092395 -52571958 + Charlie2a DNA MER1_type 1959 2696 -166 358 87 0 0 chr1 190092412 190092458 -52571895 - FLAM_A SINE Alu -25 108 63 22 56 0 0 chr1 190092458 190092494 -52571859 + AT_rich Low_complexity Low_complexity 1 36 0 2180 124 3 0 chr1 190092612 190092918 -52571435 + AluSx SINE Alu 3 309 -3 2946 238 30 41 chr1 190093001 190093918 -52570435 + L1ME3 LINE L1 5254 6160 -2 386 145 26 0 chr1 190095321 190095397 -52568956 + (CATA)n Simple_repeat Simple_repeat 2 79 0 1172 123 0 0 chr1 190096454 190096608 -52567745 + AluSg/x SINE Alu 133 286 -24 1329 208 65 99 chr1 190096814 190097379 -52566974 - MLT1D LTR MaLR -8 618 1 1643 249 104 6 chr1 190097519 190098029 -52566324 + L1ME3A LINE L1 5606 6165 -5 2228 121 0 0 chr1 190098055 190098362 -52565991 - AluSq SINE Alu -6 307 1 415 277 47 34 chr1 190098749 190098897 -52565456 - L2 LINE L2 -4 3309 3160 1042 146 12 0 chr1 190098924 190099095 -52565258 + L1MC3 LINE L1 5827 5999 -1786 451 126 115 23 chr1 190099105 190099192 -52565161 + MSTA LTR MaLR 1 95 -280 2944 65 25 0 chr1 190099192 190099590 -52564763 + L1P LINE L1 4146 4553 -1593 770 73 0 0 chr1 190099592 190099688 -52564665 + L1P LINE L1 1 96 -6050 25909 50 2 0 chr1 190099688 190102973 -52561380 + L1P LINE L1 623 3913 -2233 334 342 0 0 chr1 190103040 190103195 -52561158 + C-rich Low_complexity Low_complexity 1 155 0 2267 88 3 3 chr1 190103373 190103679 -52560674 - AluY SINE Alu -5 306 1 216 233 68 82 chr1 190103680 190103753 -52560600 - MIR SINE MIR -114 94 22 226 47 70 0 chr1 190103918 190103961 -52560392 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1509 174 30 4 chr1 190103964 190104228 -52560125 - AluJo SINE Alu -30 282 12 324 286 175 32 chr1 190105848 190106037 -52558316 + MIR SINE MIR 31 246 -16 780 199 123 14 chr1 190106341 190106552 -52557801 + MIR SINE MIR 29 262 0 423 249 196 19 chr1 190106601 190106810 -52557543 + MIR SINE MIR 2 247 -15 361 237 93 14 chr1 190106850 190106989 -52557364 - MER104 DNA Tc2 -26 154 5 247 271 74 66 chr1 190108500 190108622 -52555731 + L2 LINE L2 3191 3313 0 207 231 0 0 chr1 190108782 190108821 -52555532 + T-rich Low_complexity Low_complexity 1 39 0 559 192 20 7 chr1 190108822 190108968 -52555385 + CT-rich Low_complexity Low_complexity 2 149 0 1772 154 14 3 chr1 190108968 190109261 -52555092 - AluJb SINE Alu -16 296 1 403 357 131 8 chr1 190109475 190109873 -52554480 - LTR16A LTR ERVL -3 447 1 1722 174 0 46 chr1 190109912 190110239 -52554114 + AluJb SINE Alu 1 312 0 290 87 22 0 chr1 190110243 190110289 -52554064 + (GA)n Simple_repeat Simple_repeat 2 48 0 304 131 0 82 chr1 190110305 190110366 -52553987 + AluJb SINE Alu 74 129 -173 392 165 0 51 chr1 190110399 190110478 -52553875 + MER63 DNA MER1_type 530 604 -457 1513 203 52 0 chr1 190110494 190110646 -52553707 - AluJo SINE Alu -26 286 112 192 40 0 0 chr1 190110646 190110671 -52553682 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1513 203 52 0 chr1 190110671 190110789 -52553564 - AluJo SINE Alu -200 112 2 2267 164 22 67 chr1 190110791 190111286 -52553067 + MER63 DNA MER1_type 588 1060 0 480 293 26 26 chr1 190111288 190111519 -52552834 + L1MC/D LINE L1 5621 5849 -317 1872 139 3 21 chr1 190111596 190111884 -52552469 - AluJb SINE Alu -21 291 9 902 222 54 30 chr1 190112133 190112620 -52551733 + L1MC5 LINE L1 7249 7823 -138 26 64 0 0 chr1 190112799 190112846 -52551507 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr1 190113596 190113620 -52550733 + AT_rich Low_complexity Low_complexity 1 24 0 548 273 199 5 chr1 190113882 190114098 -52550255 + MIR SINE MIR 2 259 -3 30 0 0 0 chr1 190114159 190114189 -52550164 + AT_rich Low_complexity Low_complexity 1 30 0 1282 138 65 126 chr1 190114192 190114590 -52549763 - LTR7 LTR ERV1 -38 412 39 1256 208 30 4 chr1 190115093 190115362 -52548991 + MLT1C LTR MaLR 192 467 0 1273 87 0 0 chr1 190115743 190115916 -52548437 + AluY SINE Alu 139 311 0 707 200 56 6 chr1 190116909 190117089 -52547264 - Tigger2 DNA MER2_type -1 2717 2529 324 322 0 0 chr1 190117119 190117262 -52547091 + C-rich Low_complexity Low_complexity 1 143 0 869 132 0 11 chr1 190117263 190117445 -52546908 + (C)n Simple_repeat Simple_repeat 1 180 0 185 258 48 16 chr1 190118151 190118213 -52546140 + L2 LINE L2 3210 3273 -40 231 200 49 50 chr1 190118238 190118301 -52546052 - MIR SINE MIR -89 119 56 249 33 0 0 chr1 190118817 190118847 -52545506 + (GA)n Simple_repeat Simple_repeat 2 31 0 270 217 0 0 chr1 190124214 190124283 -52540070 + A-rich Low_complexity Low_complexity 1 69 0 200 59 29 0 chr1 190124622 190124656 -52539697 + (TTA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr1 190125444 190125472 -52538881 + AT_rich Low_complexity Low_complexity 1 28 0 192 77 0 0 chr1 190125572 190125598 -52538755 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 215 231 0 0 chr1 190129061 190129100 -52535253 + polypurine Low_complexity Low_complexity 4 42 0 34 42 0 0 chr1 190130196 190130244 -52534109 + AT_rich Low_complexity Low_complexity 1 48 0 2239 109 0 0 chr1 190131426 190131738 -52532615 - AluSc SINE Alu 0 309 1 742 169 8 0 chr1 190132270 190132400 -52531953 + FLAM_C SINE Alu 1 131 -2 216 0 0 0 chr1 190133827 190133851 -52530502 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2134 130 0 7 chr1 190134117 190134425 -52529928 + AluSx SINE Alu 1 306 -6 1440 153 81 0 chr1 190134501 190134762 -52529591 - MER7A DNA MER2_type 0 346 67 3071 89 2 46 chr1 190134762 190135163 -52529190 - L1PA13 LINE L1 -2 6161 5783 2293 118 0 0 chr1 190135163 190135467 -52528886 - AluSc SINE Alu -5 304 1 3071 89 2 46 chr1 190135467 190135539 -52528814 - L1PA13 LINE L1 -380 5783 5709 32 0 0 0 chr1 190135678 190135710 -52528643 + AT_rich Low_complexity Low_complexity 1 32 0 841 128 8 23 chr1 190135939 190136072 -52528281 + FLAM_C SINE Alu 2 132 -1 187 222 16 63 chr1 190136074 190136137 -52528216 + MIR SINE MIR 16 75 -133 21 36 0 0 chr1 190136929 190136957 -52527396 + AT_rich Low_complexity Low_complexity 1 28 0 2086 101 39 32 chr1 190138162 190138470 -52525883 - AluSx SINE Alu 0 312 3 181 204 122 20 chr1 190139487 190139536 -52524817 + MIR3 SINE MIR 150 203 -5 783 294 79 12 chr1 190140470 190140800 -52523553 + L3 LINE CR1 511 862 -715 22 0 0 0 chr1 190140848 190140870 -52523483 + AT_rich Low_complexity Low_complexity 1 22 0 2428 98 3 6 chr1 190140873 190141209 -52523144 - L1PA8A LINE L1 -2 6129 5795 263 303 40 10 chr1 190141421 190141520 -52522833 + L3 LINE CR1 864 965 -612 257 239 148 56 chr1 190141649 190141791 -52522562 - L1ME LINE L1 -219 5902 5748 277 225 113 0 chr1 190141799 190141870 -52522483 + MER91C DNA MER1_type 1 79 -61 1525 179 0 4 chr1 190141952 190142220 -52522133 - L1PB4 LINE L1 -5 6151 5885 2037 138 0 0 chr1 190142410 190142706 -52521647 - AluSg SINE Alu -14 296 1 201 324 18 36 chr1 190142764 190142875 -52521478 + MIR3 SINE MIR 98 206 -2 489 286 7 0 chr1 190142993 190143133 -52521220 + Charlie1 DNA MER1_type 1 141 -2620 * 1008 194 66 0 chr1 190143130 190143357 -52520996 + Charlie1 DNA MER1_type 2208 2449 -312 256 239 34 0 chr1 190143357 190143445 -52520908 + Charlie1 DNA MER1_type 2643 2733 -28 334 311 103 68 chr1 190144837 190145264 -52519089 + L2 LINE L2 1033 1474 -1840 2442 119 34 19 chr1 190145640 190146050 -52518303 - MSTA LTR MaLR 0 428 13 2060 132 10 3 chr1 190146495 190146791 -52517562 + AluSx SINE Alu 2 299 -13 1323 145 14 0 chr1 190146814 190147028 -52517325 - L1PA15 LINE L1 -7 6158 5942 567 328 140 58 chr1 190147031 190147872 -52516481 + L2 LINE L2 2376 3268 -4 1008 164 38 6 chr1 190147917 190148100 -52516253 - MER5A DNA MER1_type 0 189 1 3683 128 17 63 chr1 190148177 190148887 -52515466 + LTR8 LTR ERV1 15 691 0 2504 121 29 5 chr1 190149197 190149618 -52514735 - MER57B LTR ERV1 0 434 4 1159 201 20 40 chr1 190150014 190150318 -52514035 + LTR8A LTR ERV1 430 727 0 1181 224 44 70 chr1 190152029 190152413 -52511940 + MLT1A2 LTR MaLR 1 374 0 340 215 168 19 chr1 190152612 190152719 -52511634 - L2 LINE L2 -1 3312 3190 1725 247 84 44 chr1 190152794 190153513 -52510840 - L2 LINE L2 -281 3032 2287 2536 258 92 5 chr1 190153525 190154315 -52510038 - L2 LINE L2 -1618 1696 838 235 311 42 8 chr1 190154659 190154778 -52509575 - L3b LINE CR1 -224 1359 1237 1340 174 8 4 chr1 190155874 190156127 -52508226 - L1MA7 LINE L1 -304 6008 5755 1283 165 40 30 chr1 190156127 190156426 -52507927 + L1MA7 LINE L1 5986 6291 0 33 25 0 0 chr1 190157235 190157275 -52507078 + AT_rich Low_complexity Low_complexity 1 40 0 201 116 0 47 chr1 190157886 190157929 -52506424 + (TA)n Simple_repeat Simple_repeat 1 41 0 324 202 34 22 chr1 190157930 190158019 -52506334 - L1MC4 LINE L1 -1339 6703 6614 2506 93 0 0 chr1 190158028 190158340 -52506013 - AluSx SINE Alu 0 312 1 1653 147 0 86 chr1 190159560 190159873 -52504480 + AluJo SINE Alu 1 286 -26 245 333 21 0 chr1 190159943 190160039 -52504314 - MIR SINE MIR -108 154 57 1785 176 0 0 chr1 190160050 190160339 -52504014 - AluJb SINE Alu -23 289 1 379 301 130 0 chr1 190160625 190160771 -52503582 - MIR SINE MIR -96 166 2 251 320 124 74 chr1 190160933 190161642 -52502711 - L2 LINE L2 -134 3138 2381 3851 191 48 11 chr1 190162881 190163840 -52500513 - L1MB8 LINE L1 0 6178 5192 255 156 31 16 chr1 190164719 190164783 -52499570 + (TTTAA)n Simple_repeat Simple_repeat 3 67 0 489 204 12 90 chr1 190164786 190164953 -52499400 - MER106B DNA MER1_type -904 155 2 230 273 146 107 chr1 190165201 190165406 -52498947 - L2 LINE L2 -35 3237 3025 311 204 47 81 chr1 190165820 190165992 -52498361 - L1ME4a LINE L1 -4 6117 5952 853 156 11 102 chr1 190166144 190166330 -52498023 + FRAM SINE Alu 1 164 -12 96 38 0 0 chr1 190166330 190166461 -52497892 + AT_rich Low_complexity Low_complexity 1 131 0 22 35 0 0 chr1 190166590 190166619 -52497734 + AT_rich Low_complexity Low_complexity 1 29 0 1239 152 35 43 chr1 190166920 190167150 -52497203 - AluJo SINE Alu -1 311 84 204 138 0 0 chr1 190167222 190167251 -52497102 + L2 LINE L2 3219 3247 -25 * 227 37 0 0 chr1 190167225 190167252 -52497101 + MIR SINE MIR 218 244 -18 347 322 8 8 chr1 190169479 190169597 -52494756 - L2 LINE L2 -7 3306 3189 2883 244 47 48 chr1 190169610 190170493 -52493860 + L1MC4 LINE L1 6774 7657 -385 369 0 0 0 chr1 190170493 190170534 -52493819 + (CA)n Simple_repeat Simple_repeat 1 41 0 2883 244 47 48 chr1 190170534 190170919 -52493434 + L1MC4 LINE L1 7657 8041 -1 2363 91 0 0 chr1 190171471 190171768 -52492585 - AluSx SINE Alu -15 297 1 244 341 12 0 chr1 190172233 190172315 -52492038 - L2 LINE L2 0 3313 3231 285 272 176 71 chr1 190172613 190172936 -52491417 - L2 LINE L2 -785 2529 2173 365 294 111 0 chr1 190173192 190173318 -52491035 + MIR3 SINE MIR 19 158 -50 5258 162 16 15 chr1 190173561 190174020 -52490333 - L1MA7 LINE L1 -4 6287 5830 2250 87 3 32 chr1 190174020 190174331 -52490022 - AluSq SINE Alu -11 302 1 5258 162 16 15 chr1 190174331 190174976 -52489377 - L1MA7 LINE L1 -461 5830 5177 1363 134 24 0 chr1 190174975 190175228 -52489125 + L1MA7 LINE L1 4908 5166 -980 * 21 71 0 0 chr1 190175280 190175322 -52489031 + AT_rich Low_complexity Low_complexity 1 42 0 739 118 39 0 chr1 190175454 190175607 -52488746 + CT-rich Low_complexity Low_complexity 3 161 0 753 207 21 0 chr1 190175609 190175749 -52488604 - FLAM_C SINE Alu 0 143 1 554 216 116 47 chr1 190176071 190176303 -52488050 + LTR16A1 LTR ERVL 210 457 0 33 0 0 0 chr1 190176400 190176433 -52487920 + AT_rich Low_complexity Low_complexity 1 33 0 963 128 0 0 chr1 190176637 190176770 -52487583 - AluSq/x SINE Alu -180 133 1 529 271 82 0 chr1 190176770 190176940 -52487413 - MIR SINE MIR -59 203 20 24 0 0 0 chr1 190178785 190178809 -52485544 + AT_rich Low_complexity Low_complexity 1 24 0 242 233 14 27 chr1 190179145 190179218 -52485135 - Charlie8 DNA MER1_type -1000 1417 1346 497 346 125 10 chr1 190180309 190180604 -52483749 - L3 LINE CR1 -10 1567 1239 247 250 0 26 chr1 190183095 190183171 -52481182 + MER103 DNA DNA 83 156 -10 3418 36 10 0 chr1 190183603 190184017 -52480336 - L1PA4 LINE L1 -1 6154 5737 463 18 0 0 chr1 190184146 190184201 -52480152 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 2283 87 0 0 chr1 190184201 190184487 -52479866 - AluSx SINE Alu -1 340 1 311 250 45 23 chr1 190185025 190185113 -52479240 + L2 LINE L2 3223 3312 -1 1970 131 7 3 chr1 190185269 190185567 -52478786 + AluSc SINE Alu 1 299 -10 1540 153 4 19 chr1 190185716 190185978 -52478375 - AluJo SINE Alu -5 307 50 765 207 73 31 chr1 190186482 190186743 -52477610 - L1MC5 LINE L1 -51 7910 7639 209 237 13 13 chr1 190187719 190187795 -52476558 + (TATAA)n Simple_repeat Simple_repeat 1 76 0 278 296 151 24 chr1 190187816 190188188 -52476165 - L1ME4a LINE L1 -234 5887 5469 24 32 0 0 chr1 190188342 190188373 -52475980 + AT_rich Low_complexity Low_complexity 1 31 0 270 259 0 54 chr1 190188758 190188870 -52475483 - L1ME4a LINE L1 -1548 4598 4493 185 143 65 19 chr1 190188888 190189042 -52475311 + (TA)n Simple_repeat Simple_repeat 2 162 0 * 192 123 44 35 chr1 190189009 190189123 -52475230 + (TTATA)n Simple_repeat Simple_repeat 5 119 0 * 354 155 71 0 chr1 190189118 190189286 -52475067 + (TA)n Simple_repeat Simple_repeat 1 180 0 264 157 72 0 chr1 190189315 190189481 -52474872 + (TA)n Simple_repeat Simple_repeat 2 179 0 1305 224 78 3 chr1 190189487 190189880 -52474473 - MLT2B1 LTR ERVL -45 475 4 749 309 91 39 chr1 190189963 190190664 -52473689 - L2 LINE L2 -15 3298 2567 446 221 0 0 chr1 190190866 190190952 -52473401 - Tigger7 DNA MER2_type -3 2488 2403 1068 236 0 25 chr1 190190974 190191012 -52473341 - Tigger7 DNA MER2_type -471 262 225 2516 92 17 0 chr1 190191012 190191361 -52472992 - THE1A LTR MaLR 0 355 1 1068 236 0 25 chr1 190191361 190191559 -52472794 - Tigger7 DNA MER2_type -508 225 32 1949 148 3 0 chr1 190191638 190191928 -52472425 - AluSx SINE Alu -21 291 1 1159 207 15 41 chr1 190191960 190192226 -52472127 - AluJo SINE Alu -31 281 23 237 346 57 43 chr1 190192632 190192819 -52471534 - MIR SINE MIR -61 147 4 186 43 0 0 chr1 190193280 190193303 -52471050 + (A)n Simple_repeat Simple_repeat 1 23 0 2079 186 38 5 chr1 190193451 190193849 -52470504 + MSTB LTR MaLR 1 411 -15 286 311 20 26 chr1 190194738 190194889 -52469464 + MER110A-int LTR ERV1 1270 1419 -5382 842 180 70 62 chr1 190195303 190195706 -52468647 - MLT2B1 LTR ERVL 0 520 67 227 143 16 151 chr1 190195724 190195850 -52468503 - MLT2B1 LTR ERVL -411 109 1 1486 110 50 0 chr1 190195868 190196087 -52468266 - MER30 DNA MER1_type 0 230 1 561 319 67 38 chr1 190196134 190196585 -52467768 + MER110A-int LTR ERV1 1850 2313 -4488 209 111 0 67 chr1 190196929 190196974 -52467379 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 1293 301 41 77 chr1 190196975 190197829 -52466524 + MER110A-int LTR ERV1 212 1034 -3613 579 264 76 99 chr1 190198125 190198754 -52465599 + MER110A-int LTR ERV1 1228 1842 -2805 4492 237 56 40 chr1 190198767 190198958 -52465395 + MER110A-int LTR ERV1 3092 3279 -1368 1672 221 106 12 chr1 190198958 190199384 -52464969 - MLT1C LTR MaLR -1 466 1 4492 237 56 40 chr1 190199384 190200679 -52463674 + MER110A-int LTR ERV1 3279 4601 -46 2219 151 48 17 chr1 190200706 190201124 -52463229 + MLT1C LTR MaLR 37 467 0 1535 185 25 86 chr1 190201259 190201734 -52462619 + MER110A LTR ERV1 23 468 0 550 234 152 13 chr1 190202053 190202211 -52462142 + MER5A DNA MER1_type 9 188 -1 238 304 89 57 chr1 190202433 190202591 -52461762 + MIR SINE MIR 50 212 -50 275 104 21 0 chr1 190202837 190202885 -52461468 + (TTTCC)n Simple_repeat Simple_repeat 4 52 0 273 160 20 0 chr1 190202886 190202936 -52461417 + CT-rich Low_complexity Low_complexity 3 53 0 954 284 79 54 chr1 190202938 190203381 -52460972 - L2 LINE L2 -5 3308 2855 389 332 32 25 chr1 190203969 190204243 -52460110 - MLT1K LTR MaLR -335 280 20 1256 231 21 24 chr1 190204273 190204602 -52459751 + MER58B DNA MER1_type 9 336 -5 2154 135 16 44 chr1 190204602 190204988 -52459365 - THE1C LTR MaLR 0 375 1 10063 115 51 5 chr1 190204988 190206499 -52457854 - THE1C-int LTR MaLR 0 1580 1 2101 128 29 27 chr1 190206499 190206873 -52457480 - THE1C LTR MaLR 0 375 1 266 306 35 21 chr1 190206896 190207040 -52457313 - MLT1K LTR MaLR -47 541 396 403 344 54 29 chr1 190207081 190207360 -52456993 - MLT1K LTR MaLR -180 408 123 24 32 0 0 chr1 190208358 190208389 -52455964 + AT_rich Low_complexity Low_complexity 1 31 0 1551 148 47 4 chr1 190208401 190208657 -52455696 + AluJb SINE Alu 40 306 -6 210 333 0 12 chr1 190208975 190209056 -52455297 + L2 LINE L2 3215 3294 -19 356 373 0 8 chr1 190209854 190209972 -52454381 + L2 LINE L2 3154 3270 -2 395 89 0 0 chr1 190211314 190211370 -52452983 - MSTB LTR MaLR 0 426 371 2673 75 70 0 chr1 190211407 190211778 -52452575 - L1PA8 LINE L1 -13 6159 5763 2323 158 5 8 chr1 190211778 190212165 -52452188 - MSTB LTR MaLR -40 386 1 1750 247 60 24 chr1 190212186 190212219 -52452134 - MLT2B1 LTR ERVL 0 520 490 207 0 0 0 chr1 190212219 190212242 -52452111 + (TG)n Simple_repeat Simple_repeat 2 24 0 1750 247 60 24 chr1 190212242 190212710 -52451643 - MLT2B1 LTR ERVL -30 490 1 2270 80 0 13 chr1 190213068 190213368 -52450985 - AluY SINE Alu -15 296 1 1503 238 57 40 chr1 190213872 190214343 -52450010 + MLT1G LTR MaLR 37 515 -75 2105 225 92 100 chr1 190214343 190214943 -52449410 + MLT1G LTR MaLR 1 590 0 226 105 88 18 chr1 190214943 190214994 -52449359 + MLT1H LTR MaLR 470 524 -25 301 301 74 111 chr1 190215008 190215360 -52448993 + L2 LINE L2 2430 2768 -546 2246 100 3 3 chr1 190215609 190215908 -52448445 + AluSx SINE Alu 5 303 -9 976 232 165 38 chr1 190216141 190216589 -52447764 - MLT1D LTR MaLR 0 505 1 2466 53 3 7 chr1 190216635 190216937 -52447416 - AluY SINE Alu -10 301 1 230 194 194 0 chr1 190217577 190217649 -52446704 - MLT1J LTR MaLR -331 180 95 1559 212 41 50 chr1 190217955 190218418 -52445935 - LTR40b LTR ERVL -3 459 1 1610 124 51 0 chr1 190219171 190219337 -52445016 - AluSx SINE Alu -11 301 118 213 39 0 0 chr1 190219337 190219363 -52444990 + (TA)n Simple_repeat Simple_repeat 2 27 0 1610 124 51 0 chr1 190219363 190219430 -52444923 - AluSx SINE Alu -194 118 56 311 270 70 92 chr1 190220786 190220927 -52443426 - MER5A DNA MER1_type -2 187 49 297 0 0 0 chr1 190220927 190220960 -52443393 + (TAA)n Simple_repeat Simple_repeat 1 33 0 311 270 70 92 chr1 190220960 190221003 -52443350 - MER5A DNA MER1_type -140 49 7 313 248 92 9 chr1 190221047 190221156 -52443197 + MIR SINE MIR 102 219 -43 200 294 63 63 chr1 190222013 190222139 -52442214 - L3b LINE CR1 -338 1245 1120 2323 114 33 19 chr1 190222378 190222737 -52441616 + THE1B LTR MaLR 1 364 0 312 237 62 0 chr1 190223197 190223294 -52441059 - L1ME4a LINE L1 -3 6118 6016 1924 110 0 110 chr1 190223430 190223766 -52440587 + AluSq SINE Alu 1 299 -4 247 278 9 83 chr1 190225294 190225402 -52438951 - MIR SINE MIR -87 121 22 657 284 11 68 chr1 190225543 190225807 -52438546 + MIR SINE MIR 5 253 -9 793 268 40 22 chr1 190226656 190226884 -52437469 + MIR SINE MIR 31 262 0 1646 174 14 7 chr1 190227393 190227703 -52436650 + AluJo SINE Alu 1 312 0 226 345 35 29 chr1 190228102 190228273 -52436080 + MER5A DNA MER1_type 17 188 -1 2337 283 92 16 chr1 190228481 190228846 -52435507 - L2 LINE L2 -5 3308 2972 1410 217 133 35 chr1 190228846 190229107 -52435246 - MLT1D LTR MaLR 0 505 271 291 54 0 0 chr1 190229107 190229144 -52435209 + (TG)n Simple_repeat Simple_repeat 2 38 0 1410 217 133 35 chr1 190229144 190229342 -52435011 - MLT1D LTR MaLR -234 271 1 2337 283 92 16 chr1 190229342 190230042 -52434311 - L2 LINE L2 -341 2972 2170 2612 94 103 0 chr1 190230042 190230448 -52433905 + LTR7 LTR ERV1 1 448 -2 18242 96 10 54 chr1 190230450 190233573 -52430780 + HERVH LTR ERV1 1 2987 -4726 744 162 21 0 chr1 190233573 190233715 -52430638 + HERVH LTR ERV1 3146 3290 -4423 * 8634 73 28 40 chr1 190233705 190235379 -52428974 + HERVH LTR ERV1 3492 5146 -2567 1329 129 23 9 chr1 190235383 190235600 -52428753 + HERVH LTR ERV1 5600 5819 -1894 * 2289 106 56 13 chr1 190235598 190235974 -52428379 + HERVH LTR ERV1 7322 7713 0 2793 78 98 0 chr1 190235974 190236382 -52427971 + LTR7 LTR ERV1 1 448 -2 2445 266 176 8 chr1 190236383 190237477 -52426876 - L2 LINE L2 -1139 2175 899 621 247 128 73 chr1 190237477 190237961 -52426392 + MLT1H LTR MaLR 1 547 -2 2544 262 82 14 chr1 190237961 190238702 -52425651 - L2 LINE L2 -2409 905 114 207 0 0 0 chr1 190238860 190238883 -52425470 + (ATGGTG)n Simple_repeat Simple_repeat 6 28 0 807 266 208 50 chr1 190239166 190239526 -52424827 + L2 LINE L2 2375 2811 -503 862 228 114 38 chr1 190239526 190239842 -52424511 + MER58B DNA MER1_type 2 341 0 807 266 208 50 chr1 190239842 190239899 -52424454 + L2 LINE L2 2811 2858 -456 1434 209 60 66 chr1 190240637 190241155 -52423198 - L1ME1 LINE L1 0 6166 5652 3357 99 20 0 chr1 190241168 190241662 -52422691 - L1MA4A LINE L1 -11 6292 5789 186 71 0 0 chr1 190241731 190241759 -52422594 + (TA)n Simple_repeat Simple_repeat 1 28 0 217 283 0 0 chr1 190241760 190241813 -52422540 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 212 152 43 0 chr1 190241831 190241877 -52422476 + (TTAAA)n Simple_repeat Simple_repeat 1 48 0 1080 316 79 3 chr1 190242036 190242391 -52421962 + L2 LINE L2 114 495 -2819 2888 185 50 3 chr1 190242393 190243457 -52420896 - L1 LINE L1 -3373 3475 2362 346 235 0 0 chr1 190243477 190243545 -52420808 - L1 LINE L1 -5415 1434 1367 * 1545 174 12 12 chr1 190243544 190243957 -52420396 - L1M2 LINE L1 -4488 2361 1884 * 13101 157 15 14 chr1 190243934 190244115 -52420238 - L1MA2 LINE L1 0 7006 6827 1874 141 7 7 chr1 190244115 190244405 -52419948 - AluSx SINE Alu -22 290 1 13101 157 15 14 chr1 190244405 190246513 -52417840 - L1MA2 LINE L1 -179 6827 4708 1970 143 153 3 chr1 190246513 190246885 -52417468 - MSTA LTR MaLR 0 428 1 13101 157 15 14 chr1 190246885 190248099 -52416254 - L1MA2 LINE L1 -2298 4708 3497 9087 163 302 9 chr1 190248098 190248228 -52416125 - L1MA2 LINE L1 -4576 2989 2898 * 234 0 0 0 chr1 190248228 190248254 -52416099 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 9087 163 302 9 chr1 190248254 190250198 -52414155 - L1MA2 LINE L1 -4667 2898 306 1220 144 6 11 chr1 190250208 190250388 -52413965 - AluJo SINE Alu -131 181 3 324 55 0 55 chr1 190250391 190250434 -52413919 - L1M2 LINE L1 -4958 1891 1850 186 43 0 0 chr1 190250434 190250457 -52413896 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 324 55 0 55 chr1 190250457 190250468 -52413885 - L1M2 LINE L1 -4999 1850 1840 684 204 0 0 chr1 190250634 190250747 -52413606 + FLAM_A SINE Alu 2 114 -19 572 175 30 17 chr1 190250748 190250874 -52413479 - MSTA LTR MaLR -82 350 205 10258 205 9 3 chr1 190250874 190252714 -52411639 - L1M2 LINE L1 -4998 2568 718 5740 213 45 40 chr1 190252716 190254422 -52409931 - L1ME LINE L1 -497 5669 3960 942 138 7 0 chr1 190254422 190254574 -52409779 - L1PB3 LINE L1 -1 6153 6001 5740 213 45 40 chr1 190254574 190254919 -52409434 - L1ME LINE L1 -2206 3960 3618 282 303 77 14 chr1 190255160 190255381 -52408972 - L1ME LINE L1 -295 5826 5592 23 68 0 0 chr1 190255989 190256033 -52408320 + AT_rich Low_complexity Low_complexity 1 44 0 2984 190 45 2 chr1 190256039 190256079 -52408274 - MLT2B3 LTR ERVL 0 554 517 477 0 0 0 chr1 190256079 190256132 -52408221 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2984 190 45 2 chr1 190256132 190256409 -52407944 - MLT2B3 LTR ERVL -37 517 202 411 21 0 0 chr1 190256409 190256457 -52407896 + (GA)n Simple_repeat Simple_repeat 1 48 0 2984 190 45 2 chr1 190256457 190256669 -52407684 - MLT2B3 LTR ERVL -352 202 1 7804 154 15 3 chr1 190256671 190257928 -52406425 - ERVL-B3 LTR ERVL -9 5755 4484 759 191 23 0 chr1 190258208 190258339 -52406014 + AluJo SINE Alu 6 139 -173 906 314 39 47 chr1 190258428 190258896 -52405457 + LTR16B LTR ERVL 1 464 0 2101 125 3 0 chr1 190259019 190259307 -52405046 - AluSx SINE Alu -19 293 5 23 33 0 0 chr1 190260151 190260181 -52404172 + AT_rich Low_complexity Low_complexity 1 30 0 249 83 0 0 chr1 190261248 190261284 -52403069 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 279 274 41 0 chr1 190261307 190261380 -52402973 + MIR SINE MIR 116 191 -71 1220 218 116 0 chr1 190261477 190261780 -52402573 + MER20B DNA MER1_type 28 365 -418 25 31 0 0 chr1 190262115 190262147 -52402206 + AT_rich Low_complexity Low_complexity 1 32 0 596 35 0 35 chr1 190262295 190262380 -52401973 + L1PA2 LINE L1 6072 6153 -2 526 286 142 62 chr1 190262452 190262987 -52401366 - HAL1 LINE L1 -710 1797 1220 404 237 193 22 chr1 190263028 190263163 -52401190 + MIR SINE MIR 89 246 -16 34 42 0 0 chr1 190263452 190263500 -52400853 + AT_rich Low_complexity Low_complexity 1 48 0 2910 147 60 49 chr1 190263891 190264389 -52399964 - MER41D LTR ERV1 0 557 51 2197 105 3 35 chr1 190264389 190264704 -52399649 + AluSg1 SINE Alu 3 307 -2 2910 147 60 49 chr1 190264704 190264756 -52399597 - MER41D LTR ERV1 -506 51 1 369 250 0 15 chr1 190264988 190265056 -52399297 - Tigger2 DNA MER2_type -10 2708 2642 932 163 24 0 chr1 190265104 190265270 -52399083 - L1PA16 LINE L1 -2 6164 5995 909 138 121 0 chr1 190265278 190265452 -52398901 - Tigger2 DNA MER2_type -60 2658 2464 3007 147 9 31 chr1 190265493 190266043 -52398310 - Tigger2 DNA MER2_type -2180 538 1 1421 297 82 45 chr1 190266067 190267156 -52397197 - L1MEd LINE L1 -4888 1231 103 1407 186 0 0 chr1 190267386 190267617 -52396736 - AluJb SINE Alu -81 231 1 259 294 69 10 chr1 190268208 190268310 -52396043 - HAL1 LINE L1 -2395 112 5 428 225 90 0 chr1 190268380 190268491 -52395862 - L1ME3A LINE L1 -13 6157 6037 27 62 0 0 chr1 190270105 190270153 -52394200 + AT_rich Low_complexity Low_complexity 1 48 0 449 96 0 14 chr1 190270947 190271020 -52393333 + (TCCC)n Simple_repeat Simple_repeat 4 75 0 1717 170 4 4 chr1 190271856 190272132 -52392221 + AluSx SINE Alu 1 276 -36 342 0 0 0 chr1 190272135 190272173 -52392180 + (CA)n Simple_repeat Simple_repeat 1 38 0 210 268 0 0 chr1 190272289 190272330 -52392023 - MIR SINE MIR -83 125 85 238 313 116 27 chr1 190272433 190272545 -52391808 - MIR SINE MIR -68 140 19 7654 23 0 0 chr1 190272546 190274039 -52390314 - L1PA2 LINE L1 0 6155 4660 1924 236 52 63 chr1 190274647 190275357 -52388996 - LTR19C LTR ERV1 0 779 1 1977 112 29 83 chr1 190275682 190275861 -52388492 + THE1B LTR MaLR 1 149 -215 2381 83 0 10 chr1 190275861 190276173 -52388180 + AluY SINE Alu 3 311 0 1977 112 29 83 chr1 190276173 190276378 -52387975 + THE1B LTR MaLR 149 364 0 27 29 0 0 chr1 190276663 190276697 -52387656 + AT_rich Low_complexity Low_complexity 1 34 0 457 176 80 0 chr1 190277688 190277813 -52386540 + MER69 DNA AcHobo 2299 2433 -93 397 160 0 231 chr1 190279473 190279642 -52384711 - MER91B DNA MER1_type -60 130 1 312 51 0 0 chr1 190279892 190279931 -52384422 + 5S rRNA rRNA 1 39 -82 21 0 0 0 chr1 190280334 190280355 -52383998 + AT_rich Low_complexity Low_complexity 1 21 0 376 342 43 6 chr1 190280442 190280603 -52383750 + MER5B DNA MER1_type 1 167 -11 2213 108 0 0 chr1 190280707 190281003 -52383350 + AluSg1 SINE Alu 1 296 -13 198 216 0 0 chr1 190281935 190282009 -52382344 + (TTA)n Simple_repeat Simple_repeat 1 74 0 25 0 0 0 chr1 190282058 190282083 -52382270 + AT_rich Low_complexity Low_complexity 1 25 0 234 91 0 0 chr1 190282670 190282703 -52381650 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 2092 140 26 34 chr1 190282810 190283188 -52381165 - THE1C LTR MaLR 0 375 1 210 324 15 0 chr1 190283264 190283332 -52381021 - L2 LINE L2 -212 3060 2992 24 32 0 0 chr1 190284727 190284758 -52379595 + AT_rich Low_complexity Low_complexity 1 31 0 274 281 0 0 chr1 190285073 190285155 -52379198 - L1ME4a LINE L1 -75 6046 5965 340 266 126 5 chr1 190285317 190285516 -52378837 - L1ME4a LINE L1 -233 5888 5666 252 260 52 52 chr1 190285803 190285899 -52378454 - MIR SINE MIR -21 241 146 26 50 0 0 chr1 190286164 190286204 -52378149 + AT_rich Low_complexity Low_complexity 1 40 0 1066 255 103 56 chr1 190286523 190286989 -52377364 - L2 LINE L2 -9 3304 2817 355 338 30 0 chr1 190287239 190287372 -52376981 - LTR16A LTR ERVL -300 150 14 639 332 88 48 chr1 190287381 190287744 -52376609 + L1M4 LINE L1 3833 4180 -1966 2590 43 0 0 chr1 190287744 190288047 -52376306 - AluY SINE Alu -8 303 1 639 332 88 48 chr1 190288047 190288170 -52376183 + L1M4 LINE L1 4180 4297 -1849 1112 197 23 5 chr1 190288170 190288388 -52375965 - MER58A DNA MER1_type -2 222 1 639 332 88 48 chr1 190288388 190288608 -52375745 + L1M4 LINE L1 4297 4568 -1578 389 266 96 27 chr1 190288695 190288883 -52375470 - L1MC/D LINE L1 -2019 5789 5589 2091 166 17 6 chr1 190289055 190289416 -52374937 - MLT1A1 LTR MaLR 0 365 1 214 257 40 14 chr1 190289657 190289731 -52374622 + L2 LINE L2 2997 3072 -241 * 406 282 65 65 chr1 190289717 190289887 -52374466 - MIR SINE MIR -92 170 1 265 267 209 9 chr1 190290827 190290932 -52373421 - L2 LINE L2 -6 3266 3141 639 223 14 14 chr1 190291141 190291280 -52373073 + MIR SINE MIR 74 212 -50 709 310 98 3 chr1 190292090 190292406 -52371947 + HAL1 LINE L1 1528 1873 -634 279 254 21 56 chr1 190292927 190293069 -52371284 + HAL1b LINE L1 755 891 -457 853 291 156 21 chr1 190293222 190293645 -52370708 + MLT1J LTR MaLR 1 480 -31 351 292 57 68 chr1 190293680 190293872 -52370481 + HAL1 LINE L1 2318 2507 0 213 379 40 48 chr1 190294041 190294292 -52370061 - L2 LINE L2 -1212 2102 1854 1576 307 133 27 chr1 190294293 190295159 -52369194 - L2 LINE L2 -385 2929 1962 1031 196 186 35 chr1 190295159 190295531 -52368822 + MSTC LTR MaLR 1 428 0 1576 307 133 27 chr1 190295531 190295565 -52368788 - L2 LINE L2 -1352 1962 1933 28 48 0 0 chr1 190297603 190297645 -52366708 + AT_rich Low_complexity Low_complexity 1 42 0 213 262 33 0 chr1 190298496 190298557 -52365796 - MIR3 SINE MIR -7 201 139 243 262 4 30 chr1 190299108 190299191 -52365162 + MIR SINE MIR 23 75 -133 272 350 163 5 chr1 190299546 190299749 -52364604 - MIR SINE MIR -8 254 20 29 28 0 0 chr1 190300055 190300091 -52364262 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 190300511 190300535 -52363818 + AT_rich Low_complexity Low_complexity 1 24 0 829 184 7 0 chr1 190301029 190301181 -52363172 + MSTD LTR MaLR 1 153 -243 3288 117 32 72 chr1 190301182 190301797 -52362556 + LTR59 LTR ERV1 1 591 -6 364 184 13 0 chr1 190301857 190301933 -52362420 + MSTD LTR MaLR 320 396 0 1888 231 29 5 chr1 190301935 190302377 -52361976 + MSTD-int LTR MaLR 2 454 -1281 2971 179 39 68 chr1 190302383 190303098 -52361255 - LTR8A LTR ERV1 0 727 34 1371 251 75 5 chr1 190303115 190303527 -52360826 + MSTD-int LTR MaLR 409 823 -828 * 2693 238 65 7 chr1 190303521 190304149 -52360204 + MSTD-int LTR MaLR 1026 1735 0 1381 224 101 19 chr1 190304149 190304515 -52359838 + MSTD LTR MaLR 1 396 0 1803 209 43 47 chr1 190305013 190305519 -52358834 + MLT1D LTR MaLR 1 504 -1 251 329 58 53 chr1 190305758 190305983 -52358370 + MIR SINE MIR 37 262 0 447 242 197 0 chr1 190306254 190306386 -52357967 + MIR SINE MIR 49 206 -56 39 60 0 0 chr1 190306522 190306589 -52357764 + AT_rich Low_complexity Low_complexity 1 67 0 189 0 0 0 chr1 190307927 190307948 -52356405 + (A)n Simple_repeat Simple_repeat 1 21 0 234 0 0 0 chr1 190308768 190308794 -52355559 + (CA)n Simple_repeat Simple_repeat 1 26 0 276 158 122 0 chr1 190309135 190309217 -52355136 - MLT1H LTR MaLR -2 540 449 706 248 89 51 chr1 190309274 190309588 -52354765 - MLT1H LTR MaLR -221 328 3 197 194 32 81 chr1 190309751 190309813 -52354540 + L2 LINE L2 3254 3312 -1 2205 69 0 0 chr1 190310592 190310852 -52353501 - AluY SINE Alu -18 293 34 2380 90 0 0 chr1 190311364 190311665 -52352688 + AluSg SINE Alu 1 301 -9 207 301 75 11 chr1 190311759 190311852 -52352501 + L2 LINE L2 2956 3054 -218 332 313 37 8 chr1 190312906 190313040 -52351313 - L2 LINE L2 -970 2344 2207 1790 185 0 7 chr1 190313115 190313413 -52350940 + AluJo SINE Alu 4 299 -13 29 47 0 0 chr1 190313736 190313779 -52350574 + AT_rich Low_complexity Low_complexity 1 43 0 1537 205 3 19 chr1 190314706 190315018 -52349335 - AluJb SINE Alu 0 312 6 285 250 0 0 chr1 190315110 190315174 -52349179 + L2 LINE L2 3250 3313 0 191 262 0 16 chr1 190315941 190316002 -52348351 - MIR SINE MIR -101 161 102 358 302 34 49 chr1 190317273 190317478 -52346875 + HAL1b LINE L1 421 622 -726 324 291 63 37 chr1 190318011 190318200 -52346153 + L1M4 LINE L1 2211 2404 -3742 401 323 32 0 chr1 190318476 190318634 -52345719 - MER103 DNA DNA 0 166 4 252 0 0 0 chr1 190318652 190318680 -52345673 + (TTG)n Simple_repeat Simple_repeat 3 30 0 324 70 0 0 chr1 190319764 190319807 -52344546 + (TG)n Simple_repeat Simple_repeat 1 43 0 193 283 174 22 chr1 190319858 190319950 -52344403 + MIR SINE MIR 34 139 -69 23 0 0 0 chr1 190321947 190321970 -52342383 + AT_rich Low_complexity Low_complexity 1 23 0 186 267 0 0 chr1 190323266 190323311 -52341042 + L2 LINE L2 3224 3268 -4 358 253 48 0 chr1 190323681 190323764 -52340589 - L2 LINE L2 -1 3271 3185 22 0 0 0 chr1 190324379 190324401 -52339952 + AT_rich Low_complexity Low_complexity 1 22 0 1126 208 50 21 chr1 190324626 190324785 -52339568 - AluJo SINE Alu -25 287 134 261 0 0 0 chr1 190324785 190324814 -52339539 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr1 190324816 190324836 -52339517 + (TTAG)n Simple_repeat Simple_repeat 4 23 0 1126 208 50 21 chr1 190324836 190324913 -52339440 - AluJo SINE Alu -178 134 41 207 0 0 0 chr1 190325135 190325158 -52339195 + (T)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr1 190325335 190325364 -52338989 + AT_rich Low_complexity Low_complexity 1 29 0 255 31 0 0 chr1 190326341 190326373 -52337980 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 897 254 87 23 chr1 190326569 190326833 -52337520 - MER70-int LTR ERVL -3 5527 5247 301 291 89 40 chr1 190327393 190327640 -52336713 - MER70-int LTR ERVL -3599 1424 1166 407 327 71 12 chr1 190328207 190328461 -52335892 - LTR40b LTR ERVL -39 423 155 251 289 52 21 chr1 190328795 190328892 -52335461 - MIR SINE MIR -112 150 51 204 224 41 0 chr1 190330514 190330563 -52333790 + MIR3 SINE MIR 158 208 0 540 245 134 11 chr1 190331084 190331410 -52332943 - L1MC/D LINE L1 -434 5736 5325 298 315 35 53 chr1 190331447 190331879 -52332474 - L1MC/D LINE L1 -869 5277 4854 676 240 55 68 chr1 190332072 190332364 -52331989 - L1MC/D LINE L1 -2734 3412 3125 6650 140 24 7 chr1 190332517 190333667 -52330686 + L1P LINE L1 2746 3915 -2231 225 0 0 0 chr1 190333981 190334006 -52330347 + (T)n Simple_repeat Simple_repeat 1 25 0 260 91 0 0 chr1 190334412 190334445 -52329908 - U2 snRNA snRNA -155 33 1 608 269 41 45 chr1 190334499 190334744 -52329609 + MLT1K LTR MaLR 330 573 -15 471 309 184 30 chr1 190334762 190335290 -52329063 + L2 LINE L2 1798 2406 -908 292 175 0 48 chr1 190335485 190335548 -52328805 + MIR SINE MIR 172 231 -31 859 252 156 84 chr1 190335595 190336071 -52328282 - MLT1G1 LTR MaLR -4 591 82 1838 233 70 27 chr1 190336350 190336903 -52327450 + MER119 DNA MER1_type 1 577 -6 469 310 204 0 chr1 190337883 190338206 -52326147 + L2 LINE L2 1812 2200 -1114 2088 110 0 7 chr1 190338240 190338532 -52325821 + AluSx SINE Alu 1 290 -22 261 324 46 9 chr1 190338579 190338687 -52325666 - L2 LINE L2 -8 3264 3153 820 245 20 10 chr1 190338824 190339024 -52325329 - MIR SINE MIR -42 220 19 345 328 93 11 chr1 190339062 190339245 -52325108 - MIR SINE MIR -42 220 23 208 0 62 0 chr1 190340526 190340558 -52323795 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 524 148 104 82 chr1 190341394 190341447 -52322906 + MER53 DNA DNA 3 53 -136 1998 125 14 20 chr1 190341447 190341742 -52322611 + AluSx SINE Alu 1 293 -19 524 148 104 82 chr1 190341742 190341871 -52322482 + MER53 DNA DNA 53 189 0 243 300 0 29 chr1 190343036 190343106 -52321247 - MIR3 SINE MIR -8 200 133 333 308 69 19 chr1 190343367 190343526 -52320827 + L1ME LINE L1 5330 5496 -625 1206 151 56 35 chr1 190343701 190344008 -52320345 + LTR54 LTR ERV1 1 416 -94 4013 192 27 52 chr1 190344008 190345002 -52319351 - LTR5 LTR ERVK 0 969 1 1206 151 56 35 chr1 190345002 190345100 -52319253 + LTR54 LTR ERV1 416 510 0 245 258 45 0 chr1 190345103 190345169 -52319184 + L2 LINE L2 2272 2340 -974 416 296 5 82 chr1 190345255 190345451 -52318902 + L2 LINE L2 2530 2710 -604 1958 309 127 18 chr1 190345484 190345964 -52318389 - L2 LINE L2 -505 2809 2383 2410 55 10 0 chr1 190345964 190346314 -52318039 + AluY SINE Alu 1 353 0 1958 309 127 18 chr1 190346314 190346668 -52317685 - L2 LINE L2 -931 2383 1882 194 277 0 0 chr1 190346689 190346736 -52317617 + L2 LINE L2 2710 2756 -558 467 312 51 6 chr1 190346948 190347105 -52317248 + MIR SINE MIR 2 165 -97 2306 76 20 0 chr1 190347106 190347407 -52316946 + AluY SINE Alu 1 307 -4 2152 72 26 20 chr1 190347422 190347726 -52316627 + AluY SINE Alu 2 307 -4 582 292 139 5 chr1 190347749 190348136 -52316217 + HAL1 LINE L1 1455 1893 -614 1583 147 71 37 chr1 190348447 190348604 -52315749 + MLT1A1 LTR MaLR 1 151 -214 2057 138 39 36 chr1 190348604 190348967 -52315386 + THE1B LTR MaLR 1 364 0 1583 147 71 37 chr1 190348967 190349162 -52315191 + MLT1A1 LTR MaLR 151 365 0 1176 194 116 54 chr1 190349282 190349653 -52314700 + MSTD LTR MaLR 1 394 -2 1347 309 132 19 chr1 190350302 190351089 -52313264 + L2 LINE L2 2440 3313 0 301 288 70 52 chr1 190351173 190351402 -52312951 + HAL1 LINE L1 2270 2502 -5 32 43 0 0 chr1 190351472 190351518 -52312835 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr1 190351818 190351844 -52312509 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr1 190351844 190351866 -52312487 + (GA)n Simple_repeat Simple_repeat 2 23 0 27 0 0 0 chr1 190351904 190351931 -52312422 + AT_rich Low_complexity Low_complexity 1 27 0 1692 91 0 0 chr1 190351931 190352161 -52312192 - L1PB1 LINE L1 -1 6150 5921 11999 205 35 18 chr1 190352229 190355833 -52308520 - L1PB1 LINE L1 -360 5791 2130 210 37 0 0 chr1 190357372 190357399 -52306954 + (CA)n Simple_repeat Simple_repeat 1 27 0 187 186 17 17 chr1 190357400 190357459 -52306894 + CT-rich Low_complexity Low_complexity 3 61 0 2117 99 61 7 chr1 190357569 190357862 -52306491 - AluSx SINE Alu -3 309 1 187 304 101 0 chr1 190358646 190358715 -52305638 + L2 LINE L2 3188 3263 -9 213 146 0 0 chr1 190358853 190358901 -52305452 + (TA)n Simple_repeat Simple_repeat 2 49 0 686 256 17 0 chr1 190358919 190359091 -52305262 - MER119 DNA MER1_type -342 241 67 1916 128 63 41 chr1 190359177 190359544 -52304809 - THE1C LTR MaLR 0 375 1 248 331 128 29 chr1 190359897 190360069 -52304284 - MER5A DNA MER1_type 0 189 1 2508 76 0 0 chr1 190360320 190360624 -52303729 - AluY SINE Alu -7 304 1 369 311 0 9 chr1 190360748 190360854 -52303499 + MER5B DNA MER1_type 2 106 -72 2458 74 3 0 chr1 190361234 190361544 -52302809 - AluY SINE Alu 0 311 1 25 0 0 0 chr1 190361615 190361640 -52302713 + AT_rich Low_complexity Low_complexity 1 25 0 376 169 169 0 chr1 190361731 190361814 -52302539 + L1ME2 LINE L1 5451 5547 -617 320 224 256 54 chr1 190361812 190362035 -52302318 + L1ME2 LINE L1 5888 6155 -9 * 263 253 81 0 chr1 190362167 190362254 -52302099 - MIR SINE MIR -52 210 117 436 241 246 42 chr1 190362741 190362977 -52301376 - MLT1K LTR MaLR -74 514 231 276 296 23 0 chr1 190363641 190363729 -52300624 + GA-rich Low_complexity Low_complexity 1 90 0 359 286 0 0 chr1 190363971 190364048 -52300305 + L2 LINE L2 2990 3066 -247 309 336 124 26 chr1 190364435 190364661 -52299692 - L3b LINE CR1 -39 1544 1297 213 94 0 0 chr1 190365586 190365618 -52298735 + (TA)n Simple_repeat Simple_repeat 1 32 0 231 61 0 0 chr1 190366670 190366703 -52297650 + (GA)n Simple_repeat Simple_repeat 2 34 0 2623 84 9 58 chr1 190367464 190367894 -52296459 + L1P LINE L1 3901 4309 -1837 23 33 0 0 chr1 190367978 190368008 -52296345 + AT_rich Low_complexity Low_complexity 1 30 0 4548 102 12 29 chr1 190368049 190368803 -52295550 - L1PA13 LINE L1 0 6163 5446 2188 89 14 14 chr1 190369295 190369586 -52294767 + AluSx SINE Alu 1 291 -21 26 50 0 0 chr1 190369607 190369647 -52294706 + AT_rich Low_complexity Low_complexity 1 40 0 233 259 74 0 chr1 190370178 190370232 -52294121 + MIR SINE MIR 32 89 -173 273 281 135 0 chr1 190370719 190370815 -52293538 + L2 LINE L2 3164 3272 0 238 286 79 0 chr1 190370816 190370879 -52293474 + MIR SINE MIR 168 235 -27 228 294 39 10 chr1 190371998 190372100 -52292253 - L1ME3A LINE L1 -60 6110 6006 847 316 61 45 chr1 190372198 190372840 -52291513 - HERV16 LTR ERVL -4344 652 1 492 277 148 10 chr1 190372849 190373190 -52291163 - LTR16A LTR ERVL -8 442 1 545 266 114 31 chr1 190373322 190373878 -52290475 - L1MEc LINE L1 -3619 3322 2756 261 183 84 0 chr1 190373985 190374056 -52290297 - L1MEc LINE L1 -4963 1460 1384 2291 125 0 0 chr1 190374296 190374607 -52289746 - AluSx SINE Alu -1 311 1 692 211 64 12 chr1 190375151 190375322 -52289031 + MER58A DNA MER1_type 45 224 0 1560 154 48 34 chr1 190376342 190376635 -52287718 - THE1B LTR MaLR -62 302 6 216 0 0 0 chr1 190377612 190377636 -52286717 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 1618 185 6 13 chr1 190377732 190378045 -52286308 + AluJo SINE Alu 1 311 -1 2481 46 7 3 chr1 190378194 190378499 -52285854 + AluY SINE Alu 1 306 -5 283 290 16 135 chr1 190379092 190379285 -52285068 + MER5B DNA MER1_type 8 177 -1 2011 137 40 0 chr1 190381762 190382062 -52282291 + AluSx SINE Alu 1 312 0 1440 263 122 12 chr1 190382257 190383015 -52281338 + L2 LINE L2 2452 3313 0 1999 117 3 29 chr1 190383042 190383358 -52280995 - AluSq SINE Alu -5 308 1 588 271 64 30 chr1 190383491 190383727 -52280626 - MIR SINE MIR -3 259 16 321 277 100 119 chr1 190384372 190384910 -52279443 - L1M2 LINE L1 -5484 1365 838 225 94 0 0 chr1 190386716 190386748 -52277605 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 23 0 0 0 chr1 190387268 190387291 -52277062 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 190387737 190387758 -52276595 + AT_rich Low_complexity Low_complexity 1 21 0 458 234 172 7 chr1 190388717 190388862 -52275491 - MER58A DNA MER1_type -10 214 46 1833 135 3 71 chr1 190390640 190390966 -52273387 + AluJo SINE Alu 6 309 -3 737 159 8 8 chr1 190391383 190391509 -52272844 + AluJ SINE Alu 1 126 -186 189 0 0 0 chr1 190391510 190391531 -52272822 + (CAA)n Simple_repeat Simple_repeat 1 21 0 14305 116 30 65 chr1 190391868 190394374 -52269979 - Tigger1 DNA MER2_type 0 2418 2 1128 230 65 17 chr1 190394376 190394667 -52269686 - MLT1C LTR MaLR -3 464 160 21 36 0 0 chr1 190396829 190396857 -52267496 + AT_rich Low_complexity Low_complexity 1 28 0 1703 224 106 18 chr1 190398705 190399213 -52265140 + L1ME1 LINE L1 5613 6165 -1 1022 207 19 5 chr1 190399751 190399964 -52264389 - AluJb SINE Alu -13 299 84 359 196 82 0 chr1 190399964 190400061 -52264292 + L1MA8 LINE L1 6179 6283 -8 249 224 0 0 chr1 190400409 190400467 -52263886 + (TA)n Simple_repeat Simple_repeat 1 58 0 794 219 24 0 chr1 190400569 190400733 -52263620 + AluJ SINE Alu 132 299 -13 287 224 13 0 chr1 190401105 190401181 -52263172 + (TA)n Simple_repeat Simple_repeat 1 77 0 327 309 77 42 chr1 190401393 190401561 -52262792 - L2 LINE L2 -8 3305 3132 794 129 0 45 chr1 190401698 190401830 -52262523 - FLAM_C SINE Alu -7 126 1 1606 157 71 0 chr1 190401845 190402125 -52262228 - AluSx SINE Alu -12 300 1 1375 212 42 7 chr1 190402127 190402410 -52261943 - AluJo SINE Alu -16 296 4 22 0 0 0 chr1 190402413 190402435 -52261918 + AT_rich Low_complexity Low_complexity 1 22 0 332 296 30 40 chr1 190402440 190402639 -52261714 - L1ME LINE L1 -317 5804 5608 2537 11 0 0 chr1 190402770 190403047 -52261306 - AluYa5 SINE Alu -1 310 34 2938 304 72 31 chr1 190403753 190405323 -52259030 + L1PBa LINE L1 3 1637 -5226 * 13728 200 33 24 chr1 190405290 190407397 -52256956 + L1PB3 LINE L1 1 2088 -4123 1198 142 49 31 chr1 190407397 190407622 -52256731 - MER30 DNA MER1_type 0 230 2 13728 200 33 24 chr1 190407622 190411224 -52253129 + L1PB3 LINE L1 2088 5836 -375 306 264 31 0 chr1 190411227 190411356 -52252997 + (TA)n Simple_repeat Simple_repeat 2 134 0 1975 143 3 24 chr1 190411359 190411688 -52252665 + L1PB3 LINE L1 5834 6155 -56 307 164 27 14 chr1 190411688 190411751 -52252602 + L1MA8 LINE L1 6212 6285 -6 2767 197 99 27 chr1 190411763 190412439 -52251914 - L1MC4 LINE L1 -554 7488 6764 22 0 0 0 chr1 190413444 190413466 -52250887 + AT_rich Low_complexity Low_complexity 1 22 0 230 280 40 0 chr1 190414572 190414647 -52249706 + L2 LINE L2 2437 2514 -800 815 298 164 13 chr1 190414704 190415408 -52248945 - L2 LINE L2 -1 3312 2487 2983 205 100 3 chr1 190415408 190416165 -52248188 + Charlie1 DNA MER1_type 1563 2393 -368 651 207 59 15 chr1 190416166 190416301 -52248052 + Tigger3(Golem) DNA MER2_type 2 142 -2887 1509 168 0 0 chr1 190416308 190416546 -52247807 + Tigger3(Golem) DNA MER2_type 2791 3028 -1 965 194 187 22 chr1 190416546 190416861 -52247492 + Charlie1 DNA MER1_type 2392 2758 -3 309 304 85 71 chr1 190416861 190417085 -52247268 - L2 LINE L2 -890 2424 2198 941 127 15 0 chr1 190417089 190417223 -52247130 + AluJo SINE Alu 1 136 -176 22 0 0 0 chr1 190417223 190417245 -52247108 + AT_rich Low_complexity Low_complexity 1 22 0 296 331 92 25 chr1 190417453 190417616 -52246737 + L2 LINE L2 2589 2762 -552 455 262 16 8 chr1 190417993 190418115 -52246238 - L2 LINE L2 0 3313 3191 35 0 0 0 chr1 190418127 190418162 -52246191 + AT_rich Low_complexity Low_complexity 1 35 0 2245 109 0 0 chr1 190418293 190418586 -52245767 + AluSx SINE Alu 3 295 -17 3380 154 39 63 chr1 190418651 190418898 -52245455 + MER21A LTR ERV1 11 262 -669 11280 33 2 0 chr1 190418898 190421019 -52243334 - L1PA4 LINE L1 -2 6153 4030 3380 154 39 63 chr1 190421019 190421737 -52242616 + MER21A LTR ERV1 262 912 -19 2138 228 175 14 chr1 190422330 190423107 -52241246 + L1M4 LINE L1 3759 4660 -1486 200 311 9 9 chr1 190423138 190423244 -52241109 + (TATAG)n Simple_repeat Simple_repeat 5 110 0 375 181 0 0 chr1 190423294 190423366 -52240987 + (TA)n Simple_repeat Simple_repeat 1 72 0 541 270 61 58 chr1 190423369 190423762 -52240591 + L1M4 LINE L1 4840 5233 -913 259 194 16 0 chr1 190424916 190424978 -52239375 - L1MA5 LINE L1 -1 6299 6237 21 0 0 0 chr1 190424979 190425000 -52239353 + AT_rich Low_complexity Low_complexity 1 21 0 492 191 99 33 chr1 190425617 190425769 -52238584 + MER103 DNA DNA 1 162 -4 180 0 0 0 chr1 190425774 190425794 -52238559 + (T)n Simple_repeat Simple_repeat 1 20 0 328 361 87 40 chr1 190425855 190426176 -52238177 + L2 LINE L2 2916 3251 -21 224 231 0 19 chr1 190427391 190427443 -52236910 + CT-rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr1 190427543 190427567 -52236786 + AT_rich Low_complexity Low_complexity 1 24 0 3493 251 196 30 chr1 190428444 190430040 -52234313 + L2 LINE L2 1209 3309 -4 583 288 42 74 chr1 190430188 190430525 -52233828 + L2 LINE L2 332 657 -2657 647 265 37 42 chr1 190430572 190430787 -52233566 - MIR SINE MIR -15 247 34 400 418 42 8 chr1 190431019 190431378 -52232975 + L2 LINE L2 2511 2881 -433 1762 180 32 6 chr1 190431789 190432128 -52232225 - MER7A DNA MER2_type 0 346 1 268 50 0 0 chr1 190432507 190432547 -52231806 + Alu SINE Alu 260 299 -1 * 702 306 43 40 chr1 190432546 190432717 -52231636 - MARNA DNA Mariner -197 389 220 2082 115 3 20 chr1 190432717 190433021 -52231332 - AluSg SINE Alu -11 299 1 702 306 43 40 chr1 190433021 190433199 -52231154 - MARNA DNA Mariner -366 220 39 625 303 123 9 chr1 190433658 190433886 -52230467 + MIR SINE MIR 1 254 -8 611 304 110 36 chr1 190434017 190434353 -52230000 + L2 LINE L2 2382 2742 -572 792 243 79 27 chr1 190434415 190434503 -52229850 - AluSx SINE Alu 0 312 230 2167 76 38 3 chr1 190434503 190434791 -52229562 - AluY SINE Alu -13 298 1 792 243 79 27 chr1 190434791 190434994 -52229359 - AluSx SINE Alu -82 230 6 617 298 77 54 chr1 190435008 190435361 -52228992 + L2 LINE L2 2824 3184 -129 1936 181 90 5 chr1 190436917 190437222 -52227131 - Tigger2a DNA MER2_type -2275 433 85 186 43 0 0 chr1 190437222 190437245 -52227108 + (GGAGAA)n Simple_repeat Simple_repeat 6 28 0 1936 181 90 5 chr1 190437245 190437338 -52227015 - Tigger2a DNA MER2_type -2623 85 1 208 209 19 76 chr1 190439202 190439307 -52225046 + T-rich Low_complexity Low_complexity 2 100 0 200 267 40 27 chr1 190439453 190439528 -52224825 + MIR SINE MIR 150 225 -37 229 314 239 13 chr1 190439842 190440227 -52224126 + L3 LINE CR1 787 1258 -319 362 317 58 0 chr1 190440530 190440634 -52223719 + L2 LINE L2 3157 3266 -6 440 241 43 71 chr1 190440637 190440778 -52223575 + L3 LINE CR1 1427 1563 -14 203 0 0 36 chr1 190440898 190440926 -52223427 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7547 24 14 0 chr1 190440927 190442219 -52222134 - L1PA3 LINE L1 -9 6146 4843 18908 28 3 0 chr1 190442319 190444608 -52219745 - L1PA3 LINE L1 -1254 4892 2596 304 238 7 119 chr1 190444681 190444824 -52219529 - L1MC4 LINE L1 -1307 6735 6609 392 286 8 0 chr1 190444825 190444958 -52219395 + (TA)n Simple_repeat Simple_repeat 2 135 0 542 162 81 37 chr1 190444971 190445107 -52219246 + L2 LINE L2 3172 3313 0 511 307 79 18 chr1 190446645 190446980 -52217373 - L1MC4 LINE L1 -402 5760 5518 210 71 0 0 chr1 190447633 190447661 -52216692 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 209 331 157 0 chr1 190448745 190448866 -52215487 - L2 LINE L2 -4 3309 3170 485 305 122 27 chr1 190450006 190450301 -52214052 - L2 LINE L2 -32 3281 2959 2277 88 7 3 chr1 190450307 190450612 -52213741 + AluSc SINE Alu 1 306 -3 210 37 0 0 chr1 190451950 190451977 -52212376 + (CA)n Simple_repeat Simple_repeat 2 28 0 562 290 35 13 chr1 190453402 190453586 -52210767 + MIR SINE MIR 2 188 -73 715 195 51 55 chr1 190453951 190454187 -52210166 - MER106A DNA MER1_type -1 235 1 414 307 31 25 chr1 190454223 190454386 -52209967 + MIR SINE MIR 12 175 -87 302 229 0 0 chr1 190456965 190457026 -52207327 - MLT1J LTR MaLR -2 509 449 628 219 81 0 chr1 190457026 190457186 -52207167 + MIR SINE MIR 79 251 -11 183 80 0 0 chr1 190457198 190457223 -52207130 + (TTA)n Simple_repeat Simple_repeat 2 26 0 646 222 62 41 chr1 190457325 190457519 -52206834 - MLT1J LTR MaLR -269 242 45 2313 169 68 13 chr1 190457533 190457988 -52206365 - MER89 LTR ERV1 -2 557 78 221 306 0 19 chr1 190458011 190458119 -52206234 + (TA)n Simple_repeat Simple_repeat 2 107 0 295 349 92 43 chr1 190462075 190462379 -52201974 + L2 LINE L2 2932 3250 -22 189 0 0 0 chr1 190462379 190462400 -52201953 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2461 50 0 0 chr1 190462934 190463235 -52201118 + AluY SINE Alu 1 301 -10 35 41 0 0 chr1 190465023 190465072 -52199281 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr1 190465526 190465555 -52198798 + AT_rich Low_complexity Low_complexity 1 29 0 630 231 133 36 chr1 190467638 190467833 -52196520 + MIR SINE MIR 2 215 -47 336 333 88 26 chr1 190470375 190470603 -52193750 + L2 LINE L2 2829 3070 -202 41785 37 24 1 chr1 190471112 190477128 -52187225 - L1PA3 LINE L1 0 6155 1 387 356 101 38 chr1 190477269 190477774 -52186579 - L2 LINE L2 -731 2583 2047 444 301 20 14 chr1 190478301 190478447 -52185906 + L2 LINE L2 3162 3308 -5 210 37 0 0 chr1 190479539 190479566 -52184787 + (T)n Simple_repeat Simple_repeat 1 27 0 466 189 39 63 chr1 190479797 190479924 -52184429 - MIR3 SINE MIR -6 202 79 23 33 0 0 chr1 190483892 190483922 -52180431 + AT_rich Low_complexity Low_complexity 1 30 0 1514 103 40 9 chr1 190484236 190484459 -52179894 + MER30 DNA MER1_type 1 230 0 219 354 151 54 chr1 190485485 190485551 -52178802 + L2 LINE L2 2823 2881 -391 1932 5 0 0 chr1 190485551 190485761 -52178592 - AluYa5 SINE Alu -13 298 89 219 354 151 54 chr1 190485761 190486104 -52178249 + L2 LINE L2 2881 3272 0 200 331 88 7 chr1 190486575 190486711 -52177642 - L2 LINE L2 -50 3263 3117 371 303 113 18 chr1 190486970 190487370 -52176983 + L1ME LINE L1 4399 4836 -1310 322 236 116 106 chr1 190487848 190488141 -52176212 + L1ME LINE L1 5490 5785 -336 1083 175 116 56 chr1 190488476 190488727 -52175626 + AluJo SINE Alu 3 268 -44 5226 214 82 42 chr1 190488796 190489976 -52174377 - L1MC4 LINE L1 -1 8041 6787 248 0 0 30 chr1 190489976 190490009 -52174344 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5226 214 82 42 chr1 190490009 190490330 -52174023 - L1MC4 LINE L1 -1255 6787 6480 2053 125 3 0 chr1 190490619 190490907 -52173446 + AluSx SINE Alu 1 289 -23 197 179 0 51 chr1 190491243 190491282 -52173071 - MIR SINE MIR -12 250 214 * 209 340 0 0 chr1 190491274 190491324 -52173029 - L2 LINE L2 -89 3183 3134 325 330 85 23 chr1 190491401 190491577 -52172776 + MIR SINE MIR 15 201 -61 279 0 0 0 chr1 190492128 190492159 -52172194 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 259 239 131 39 chr1 190492160 190492290 -52172063 - L2 LINE L2 -107 3206 3065 2032 135 3 0 chr1 190492308 190492596 -52171757 - AluSx SINE Alu -23 289 1 609 339 163 10 chr1 190492674 190493406 -52170947 + L2 LINE L2 1806 2649 -665 348 306 9 0 chr1 190493569 190493677 -52170676 + L2 LINE L2 3193 3301 -12 330 324 72 92 chr1 190493724 190494070 -52170283 + L2 LINE L2 2934 3272 0 28 0 0 0 chr1 190495171 190495199 -52169154 + AT_rich Low_complexity Low_complexity 1 28 0 2156 184 106 70 chr1 190495612 190496243 -52168110 - MLT1E1 LTR MaLR 0 654 1 236 253 19 6 chr1 190496729 190496891 -52167462 + (TA)n Simple_repeat Simple_repeat 1 164 0 23 0 0 0 chr1 190498176 190498199 -52166154 + AT_rich Low_complexity Low_complexity 1 23 0 469 260 58 32 chr1 190498706 190498860 -52165493 - MIR3 SINE MIR -6 202 45 287 237 237 10 chr1 190499119 190499216 -52165137 - MER45 DNA AcHobo -834 119 1 26 82 0 0 chr1 190501772 190501833 -52162520 + AT_rich Low_complexity Low_complexity 1 61 0 22 35 0 0 chr1 190502249 190502278 -52162075 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr1 190503370 190503402 -52160951 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr1 190504191 190504215 -52160138 + AT_rich Low_complexity Low_complexity 1 24 0 262 163 51 0 chr1 190504959 190505057 -52159296 + (TA)n Simple_repeat Simple_repeat 1 103 0 212 382 31 27 chr1 190506473 190506698 -52157655 + L2 LINE L2 2686 2911 -403 631 267 155 40 chr1 190507024 190507346 -52157007 - L2 LINE L2 -4 3309 2951 181 305 176 19 chr1 190507484 190507694 -52156659 - L3 LINE CR1 -322 1255 1013 553 209 62 39 chr1 190508028 190508157 -52156196 + MER112 DNA MER1_type 129 260 0 205 282 40 40 chr1 190508323 190508447 -52155906 - MIR SINE MIR -41 221 98 774 237 0 107 chr1 190509251 190509542 -52154811 + L2 LINE L2 3053 3312 -1 705 260 40 99 chr1 190509585 190509989 -52154364 - MLT1I LTR MaLR 0 409 30 1397 217 106 18 chr1 190510805 190511279 -52153074 - MLT1E2 LTR MaLR 0 626 51 435 94 0 4 chr1 190511444 190511667 -52152686 + AluY SINE Alu 1 311 -1 363 252 92 34 chr1 190512791 190512910 -52151443 + MIR SINE MIR 43 168 -94 394 291 55 0 chr1 190512937 190513047 -52151306 + L2 LINE L2 3148 3263 -9 198 0 0 0 chr1 190513374 190513396 -52150957 + (TG)n Simple_repeat Simple_repeat 1 22 0 459 340 184 6 chr1 190514163 190514495 -52149858 + L2 LINE L2 2554 2944 -370 384 316 48 30 chr1 190514794 190515025 -52149328 - LTR16C LTR ERVL -19 472 238 390 42 0 0 chr1 190516885 190516933 -52147420 + (TG)n Simple_repeat Simple_repeat 1 48 0 26 0 0 0 chr1 190518001 190518027 -52146326 + AT_rich Low_complexity Low_complexity 1 26 0 856 207 36 54 chr1 190518372 190518594 -52145759 + MER20 DNA MER1_type 1 218 -1 864 103 8 0 chr1 190519413 190519539 -52144814 - L1PA13 LINE L1 -8 6155 6029 3480 112 2 4 chr1 190519539 190520046 -52144307 - L1PA13 LINE L1 -66 6097 5592 292 299 37 9 chr1 190520391 190520498 -52143855 + L2 LINE L2 3191 3300 -13 1868 183 100 24 chr1 190520503 190520945 -52143408 - MLT1D LTR MaLR -8 618 21 2234 123 100 5 chr1 190521224 190521613 -52142740 + MSTA LTR MaLR 1 426 -2 202 360 27 0 chr1 190522130 190522205 -52142148 - L2 LINE L2 -2 3311 3235 730 275 83 25 chr1 190522413 190522653 -52141700 - MIR SINE MIR 0 262 9 2324 175 42 69 chr1 190523011 190523578 -52140775 + MER74A LTR ERVL 7 558 0 194 313 83 111 chr1 190523871 190524015 -52140338 - L2 LINE L2 -214 3058 2919 2140 110 3 3 chr1 190525379 190525678 -52138675 + AluSx SINE Alu 2 300 -12 1987 122 0 64 chr1 190525706 190526066 -52138287 - MER1B DNA MER1_type 0 337 1 223 368 66 7 chr1 190526100 190526236 -52138117 - MIR SINE MIR -70 192 49 21 0 0 0 chr1 190526879 190526900 -52137453 + AT_rich Low_complexity Low_complexity 1 21 0 2019 117 4 0 chr1 190526907 190527188 -52137165 - AluSx SINE Alu -30 282 1 201 311 67 0 chr1 190527361 190527451 -52136902 - L3 LINE CR1 -310 1267 1172 26 30 0 0 chr1 190528350 190528383 -52135970 + AT_rich Low_complexity Low_complexity 1 33 0 221 328 134 0 chr1 190530031 190530150 -52134203 + MIR SINE MIR 20 154 -108 534 194 10 0 chr1 190530724 190530822 -52133531 + ERVL LTR ERVL 4925 5023 -741 524 176 20 10 chr1 190531169 190531271 -52133082 + MLT2B1 LTR ERVL 3 105 -415 324 349 51 28 chr1 190531341 190531556 -52132797 - L2 LINE L2 -428 2886 2667 31 68 0 0 chr1 190532059 190532118 -52132235 + AT_rich Low_complexity Low_complexity 1 59 0 918 215 94 35 chr1 190532763 190533211 -52131142 - MER69 DNA AcHobo -5 2521 2010 * 1379 301 62 0 chr1 190533209 190533613 -52130740 - MER69 DNA AcHobo -658 568 140 761 206 133 11 chr1 190533613 190533793 -52130560 - MLT1A2 LTR MaLR 0 374 173 204 216 0 0 chr1 190534815 190534852 -52129501 + (CA)n Simple_repeat Simple_repeat 2 38 0 2159 260 139 17 chr1 190536427 190537249 -52127104 - MER69B DNA AcHobo -1 1225 304 738 318 95 3 chr1 190537276 190537540 -52126813 + ERVL LTR ERVL 2776 3073 -2691 558 229 0 0 chr1 190537540 190537658 -52126695 + L1PB4 LINE L1 6026 6143 -13 738 318 95 3 chr1 190537658 190537698 -52126655 + ERVL LTR ERVL 3073 3108 -2656 1359 309 26 8 chr1 190537716 190538211 -52126142 + ERVL LTR ERVL 4879 5382 -382 1483 203 40 0 chr1 190538325 190538480 -52125873 - AluJo SINE Alu -25 287 115 195 42 0 0 chr1 190538480 190538504 -52125849 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1483 203 40 0 chr1 190538504 190538624 -52125729 - AluJo SINE Alu -197 115 1 2046 123 58 14 chr1 190539328 190539687 -52124666 + THE1C LTR MaLR 1 375 0 229 313 116 0 chr1 190540192 190540304 -52124049 + MIR SINE MIR 37 161 -101 420 202 8 85 chr1 190540420 190540549 -52123804 - MER103 DNA DNA -3 163 45 547 313 132 1 chr1 190541128 190541332 -52123021 + MIR SINE MIR 29 260 -2 2200 116 0 0 chr1 190541369 190541661 -52122692 + AluSg SINE Alu 1 292 -18 398 281 204 25 chr1 190542440 190542636 -52121717 + MIR SINE MIR 31 261 -1 195 129 0 0 chr1 190543039 190543070 -52121283 + (TG)n Simple_repeat Simple_repeat 1 31 0 285 327 145 19 chr1 190543177 190543391 -52120962 - MIR SINE MIR -14 248 8 225 193 12 36 chr1 190545591 190545674 -52118679 + CT-rich Low_complexity Low_complexity 3 83 0 189 402 76 31 chr1 190545835 190546126 -52118227 + L2 LINE L2 2364 2667 -647 268 153 34 51 chr1 190546137 190546196 -52118157 - L2 LINE L2 0 3272 3215 217 222 0 19 chr1 190546327 190546381 -52117972 + CT-rich Low_complexity Low_complexity 3 55 0 25 31 0 0 chr1 190546824 190546856 -52117497 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr1 190546929 190546952 -52117401 + (T)n Simple_repeat Simple_repeat 1 23 0 187 313 87 35 chr1 190548215 190548406 -52115947 + MIR3 SINE MIR 1 199 -9 1336 154 84 10 chr1 190548932 190549230 -52115123 - MER33 DNA MER1_type 0 324 5 409 57 0 0 chr1 190549479 190549532 -52114821 + MADE1 DNA Mariner 1 53 -27 302 265 145 43 chr1 190551389 190551506 -52112847 - MIR3 SINE MIR -13 195 67 28 0 0 0 chr1 190554512 190554540 -52109813 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 190554569 190554590 -52109763 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr1 190557775 190557809 -52106544 + (TTA)n Simple_repeat Simple_repeat 2 35 0 233 365 112 17 chr1 190659525 190659881 -52004472 + L2 LINE L2 2469 2858 -456 235 347 74 0 chr1 190660183 190660278 -52004075 - L2 LINE L2 -38 3234 3133 342 163 139 12 chr1 190660413 190660462 -52003891 - MLT2A1 LTR ERVL 0 453 412 279 0 0 0 chr1 190660462 190660493 -52003860 + (CA)n Simple_repeat Simple_repeat 2 32 0 342 163 139 12 chr1 190660493 190660529 -52003824 - MLT2A1 LTR ERVL -41 412 357 332 83 67 17 chr1 190660575 190660635 -52003718 - MLT2A1 LTR ERVL -31 413 351 193 189 0 45 chr1 190660665 190660776 -52003577 + (TA)n Simple_repeat Simple_repeat 1 106 0 2808 76 28 8 chr1 190660781 190661176 -52003177 - MLT2A1 LTR ERVL -41 403 1 218 321 24 24 chr1 190661179 190661263 -52003090 - L2 LINE L2 -258 3014 2931 22 0 0 0 chr1 190661267 190661289 -52003064 + AT_rich Low_complexity Low_complexity 1 22 0 190 359 0 0 chr1 190662160 190662213 -52002140 - MIR SINE MIR -207 55 3 1438 312 170 7 chr1 190662882 190663639 -52000714 + L2 LINE L2 1123 2003 -1311 543 225 135 72 chr1 190663651 190663873 -52000480 - MLT1H LTR MaLR 0 549 314 344 234 35 88 chr1 190664621 190664792 -51999561 - MIR3 SINE MIR -31 177 16 2215 139 0 20 chr1 190665503 190665847 -51998506 + MER1B DNA MER1_type 1 337 0 323 381 81 0 chr1 190666104 190666264 -51998089 + MIR SINE MIR 2 174 -88 448 200 27 9 chr1 190666565 190666675 -51997678 + LTR37A LTR ERV1 315 426 0 2085 130 0 0 chr1 190667778 190668077 -51996276 - AluSg SINE Alu -11 299 1 1325 145 106 56 chr1 190669166 190669469 -51994884 - MER33 DNA MER1_type -6 318 1 367 268 80 27 chr1 190669918 190670030 -51994323 + L2 LINE L2 3194 3311 -2 1112 317 102 8 chr1 190671305 190671794 -51992559 - L2 LINE L2 0 3313 2776 293 102 17 0 chr1 190672850 190672909 -51991444 + (TA)n Simple_repeat Simple_repeat 2 61 0 24 53 0 0 chr1 190673046 190673084 -51991269 + AT_rich Low_complexity Low_complexity 1 38 0 252 312 184 8 chr1 190675428 190675553 -51988800 + MIR SINE MIR 79 225 -37 24 0 0 0 chr1 190675553 190675577 -51988776 + AT_rich Low_complexity Low_complexity 1 24 0 418 344 99 31 chr1 190675713 190676065 -51988288 - L2 LINE L2 -994 2320 1945 1928 267 175 52 chr1 190676068 190676678 -51987675 - L2 LINE L2 -4 3309 2776 2193 115 3 0 chr1 190676678 190676973 -51987380 + AluSc SINE Alu 1 296 -13 1928 267 175 52 chr1 190676973 190677738 -51986615 - L2 LINE L2 -537 2776 1723 1909 207 32 37 chr1 190677752 190678215 -51986138 + MLT1C LTR MaLR 7 467 0 183 100 0 0 chr1 190678445 190678475 -51985878 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 954 250 22 13 chr1 190679286 190679514 -51984839 - MIR SINE MIR -2 260 31 21 0 0 0 chr1 190680475 190680496 -51983857 + AT_rich Low_complexity Low_complexity 1 21 0 230 185 37 19 chr1 190681035 190681089 -51983264 + CT-rich Low_complexity Low_complexity 2 56 0 214 303 184 18 chr1 190681391 190681500 -51982853 + L2 LINE L2 3146 3272 0 1607 168 44 0 chr1 190682277 190682575 -51981778 + AluJb SINE Alu 1 311 -1 411 308 38 15 chr1 190683232 190683365 -51980988 + MIR SINE MIR 4 139 -123 219 161 16 65 chr1 190683579 190683592 -51980761 + A-rich Low_complexity Low_complexity 4 16 -46 726 172 0 8 chr1 190683592 190683720 -51980633 + FLAM_A SINE Alu 1 127 -6 219 161 16 65 chr1 190683720 190683768 -51980585 + A-rich Low_complexity Low_complexity 16 62 0 299 306 12 0 chr1 190683818 190683903 -51980450 - MIR SINE MIR -107 155 70 189 387 40 16 chr1 190684039 190684163 -51980190 - MIR SINE MIR -113 149 23 418 270 104 54 chr1 190685698 190685920 -51978433 + L1MEd LINE L1 524 756 -5616 222 118 20 39 chr1 190687004 190687055 -51977298 + (TTA)n Simple_repeat Simple_repeat 2 51 0 199 273 193 11 chr1 190688215 190688303 -51976050 + L2 LINE L2 3201 3304 -9 765 212 24 0 chr1 190688867 190689032 -51975321 - AluSx SINE Alu -143 169 1 250 124 22 42 chr1 190689034 190689079 -51975274 - L1P5 LINE L1 -306 5825 5771 356 88 18 0 chr1 190689079 190689136 -51975217 + (CA)n Simple_repeat Simple_repeat 2 59 0 250 124 22 42 chr1 190689136 190689165 -51975188 - L1P5 LINE L1 -360 5771 5743 285 244 148 0 chr1 190689181 190689296 -51975057 - L1ME LINE L1 -462 5659 5528 4212 8 0 0 chr1 190689726 190690202 -51974151 - L1PA2 LINE L1 0 6155 5680 2305 293 132 8 chr1 190690219 190691166 -51973187 + L2 LINE L2 1995 3063 -250 203 284 35 71 chr1 190691186 190691327 -51973026 + MIR SINE MIR 127 262 0 1773 239 75 19 chr1 190691727 190692623 -51971730 + L1MEd LINE L1 2026 2977 -3405 289 344 70 25 chr1 190692796 190693037 -51971316 + MIR SINE MIR 9 260 -2 2149 96 3 10 chr1 190694242 190694543 -51969810 + AluSc SINE Alu 1 299 -10 973 237 28 19 chr1 190695009 190695330 -51969023 + MER33 DNA MER1_type 1 324 0 354 274 206 0 chr1 190695335 190695481 -51968872 + MIR SINE MIR 57 232 -30 22 0 0 0 chr1 190695787 190695809 -51968544 + AT_rich Low_complexity Low_complexity 1 22 0 333 227 64 64 chr1 190696801 190696911 -51967442 + L2 LINE L2 3201 3310 -3 308 320 54 41 chr1 190697062 190697209 -51967144 + MIR SINE MIR 92 240 -22 276 278 111 0 chr1 190697216 190697288 -51967065 - L2 LINE L2 0 3313 3234 183 80 0 0 chr1 190698441 190698466 -51965887 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 700 128 8 8 chr1 190698539 190698664 -51965689 + (TTCC)n Simple_repeat Simple_repeat 1 125 0 2164 109 7 0 chr1 190698664 190698958 -51965395 - AluSq SINE Alu -17 296 1 414 300 54 50 chr1 190699261 190699492 -51964861 - MIR SINE MIR -34 228 1 300 198 0 125 chr1 190699494 190699590 -51964763 - L1MC4 LINE L1 -1346 6696 6613 353 170 47 10 chr1 190699593 190699796 -51964557 + (TA)n Simple_repeat Simple_repeat 1 210 0 556 225 28 7 chr1 190701016 190701158 -51963195 - L1ME4a LINE L1 -2 6119 5975 271 317 193 15 chr1 190701278 190701537 -51962816 + L2 LINE L2 902 1206 -2108 * 273 263 53 129 chr1 190701523 190701694 -51962659 + L2 LINE L2 2875 3032 -281 211 302 19 0 chr1 190701807 190701860 -51962493 + L2 LINE L2 3214 3267 -5 324 242 10 0 chr1 190701989 190702094 -51962259 + L1MC4 LINE L1 2006 6983 -1339 259 211 0 0 chr1 190702104 190702156 -51962197 + MER4-int LTR ERV1 1111 1162 -5436 26 0 0 0 chr1 190703370 190703396 -51960957 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr1 190704207 190704233 -51960120 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 244 324 0 0 chr1 190705394 190705468 -51958885 - L1M4 LINE L1 -2052 4094 4021 1997 137 0 0 chr1 190705524 190705802 -51958551 + AluSx SINE Alu 1 278 -34 531 192 62 15 chr1 190705839 190705969 -51958384 - L1M4 LINE L1 -2206 3940 3805 674 254 74 55 chr1 190705970 190706354 -51957999 - L1M4 LINE L1 -2828 3318 2920 1619 171 0 58 chr1 190706354 190706663 -51957690 - AluJo SINE Alu -15 297 7 674 254 74 55 chr1 190706663 190706805 -51957548 - L1M4 LINE L1 -3226 2920 2782 502 267 174 0 chr1 190707284 190707445 -51956908 - MIR SINE MIR -71 191 3 479 214 13 19 chr1 190707874 190708028 -51956325 + CT-rich Low_complexity Low_complexity 4 156 0 228 182 0 0 chr1 190709143 190709187 -51955166 - L1PA15 LINE L1 -6 6159 6116 * 8012 141 14 18 chr1 190709179 190709876 -51954477 - L1PA13 LINE L1 -85 6078 5380 2135 113 10 0 chr1 190709876 190710167 -51954186 - AluSq SINE Alu -19 294 1 8012 141 14 18 chr1 190710167 190711362 -51952991 - L1PA13 LINE L1 -783 5380 4187 1782 133 215 6 chr1 190711362 190711716 -51952637 - MSTA LTR MaLR 0 428 1 8012 141 14 18 chr1 190711716 190712031 -51952322 - L1PA13 LINE L1 -1976 4187 3872 2022 116 3 39 chr1 190712051 190712361 -51951992 + AluSx SINE Alu 1 299 -13 237 33 0 0 chr1 190712364 190712394 -51951959 - L1PA13 LINE L1 -2346 3800 3771 658 254 104 54 chr1 190713062 190713695 -51950658 - Charlie7 DNA MER1_type -35 2577 1913 293 283 112 13 chr1 190713846 190713998 -51950355 - Charlie7 DNA MER1_type -2445 167 1 215 359 22 0 chr1 190714076 190714168 -51950185 - L3 LINE CR1 -177 1400 1307 214 385 0 0 chr1 190714193 190714258 -51950095 - L3 LINE CR1 -11 1566 1502 367 200 63 0 chr1 190714259 190714354 -51949999 + MER53 DNA DNA 1 101 -88 2128 107 7 39 chr1 190714660 190714968 -51949385 - AluSx SINE Alu -14 298 1 834 207 5 58 chr1 190715556 190715744 -51948609 + MER45A DNA AcHobo 1 178 0 195 408 31 21 chr1 190715928 190716119 -51948234 + L2 LINE L2 2493 2685 -629 461 252 84 8 chr1 190716147 190716266 -51948087 + MER58A DNA MER1_type 49 176 -48 364 179 77 13 chr1 190716278 190716356 -51947997 + MER58B DNA MER1_type 258 340 -1 22 0 0 0 chr1 190716394 190716416 -51947937 + AT_rich Low_complexity Low_complexity 1 22 0 1601 198 68 20 chr1 190716669 190717022 -51947331 - MLT1A2 LTR MaLR 0 374 5 486 337 118 42 chr1 190717176 190717508 -51946845 + L2 LINE L2 2914 3270 -2 291 346 236 0 chr1 190718108 190718316 -51946037 - MIR SINE MIR -1 261 5 23 33 0 0 chr1 190718978 190719008 -51945345 + AT_rich Low_complexity Low_complexity 1 30 0 416 368 110 12 chr1 190719315 190719967 -51944386 + L2 LINE L2 1520 2235 -1079 184 103 569 0 chr1 190720059 190720117 -51944236 - MIR SINE MIR -10 252 162 4986 241 52 33 chr1 190720354 190720774 -51943579 - L1ME1 LINE L1 -4 6162 5751 201 39 0 0 chr1 190720774 190720800 -51943553 + (TA)n Simple_repeat Simple_repeat 1 26 0 2000 34 0 0 chr1 190720800 190721035 -51943318 - L1PA5 LINE L1 -16 6138 5904 4986 241 52 33 chr1 190721035 190722011 -51942342 - L1ME1 LINE L1 -415 5751 4795 2279 65 10 46 chr1 190722011 190722318 -51942035 - AluY SINE Alu -15 296 1 4986 241 52 33 chr1 190722318 190723536 -51940817 - L1ME1 LINE L1 -1371 4795 3495 231 164 0 0 chr1 190723541 190723596 -51940757 - L1MB4 LINE L1 0 6180 6126 338 163 12 58 chr1 190723599 190723685 -51940668 - L1MC2 LINE L1 -1 6343 6262 400 149 0 0 chr1 190723691 190723758 -51940595 - L1MC1 LINE L1 -138 6195 6129 2391 95 0 0 chr1 190723770 190724075 -51940278 - AluSx SINE Alu -7 305 1 4351 158 42 28 chr1 190724075 190724334 -51940019 - L1PBa LINE L1 -3752 3110 2856 2234 85 3 10 chr1 190724334 190724627 -51939726 - AluY SINE Alu -20 291 1 4351 158 42 28 chr1 190724627 190725347 -51939006 - L1PBa LINE L1 -4006 2856 2108 * 5956 120 163 25 chr1 190725330 190725927 -51938426 - L1PBa LINE L1 -4998 1865 1352 2411 75 20 0 chr1 190725927 190726232 -51938121 + AluY SINE Alu 1 311 0 5956 120 163 25 chr1 190726232 190726716 -51937637 - L1PBa LINE L1 -5511 1352 635 1039 178 5 0 chr1 190726717 190726914 -51937439 - L1PBa LINE L1 -6663 200 3 680 186 0 0 chr1 190726914 190727032 -51937321 - L1MC1 LINE L1 -189 6144 6027 * 1171 153 68 0 chr1 190727017 190727239 -51937114 - L1MB3 LINE L1 -44 6139 5903 367 73 29 0 chr1 190727239 190727307 -51937046 + (TTTA)n Simple_repeat Simple_repeat 3 72 0 5384 102 45 23 chr1 190727307 190728144 -51936209 - SVA Other Other -23 1363 508 1128 184 61 0 chr1 190728147 190728375 -51935978 - L1MB3 LINE L1 -455 5716 5475 10291 215 24 28 chr1 190728395 190730257 -51934096 - L1PA13 LINE L1 -42 6119 4251 1447 201 0 43 chr1 190730257 190730560 -51933793 + AluJo SINE Alu 2 291 -21 10291 215 24 28 chr1 190730560 190732731 -51931622 - L1PA13 LINE L1 -1910 4251 2138 1578 177 14 16 chr1 190732731 190733123 -51931230 - MER7A DNA MER2_type 0 346 1 10943 174 59 27 chr1 190733123 190734694 -51929659 - L1M4c LINE L1 -4009 2375 855 417 39 0 0 chr1 190734694 190734745 -51929608 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 10943 174 59 27 chr1 190734745 190735266 -51929087 - L1M4c LINE L1 -5529 855 202 2276 87 0 0 chr1 190735266 190735552 -51928801 + AluY SINE Alu 1 286 -25 10943 174 59 27 chr1 190735552 190735746 -51928607 - L1M4c LINE L1 -6182 202 16 2830 249 62 38 chr1 190735723 190737514 -51926839 - L1MEc LINE L1 -2613 3769 1818 * 1485 236 3 0 chr1 190737517 190737813 -51926540 - AluJo SINE Alu -14 298 2 261 0 0 0 chr1 190737813 190737842 -51926511 + (A)n Simple_repeat Simple_repeat 1 29 0 604 269 0 0 chr1 190737870 190738000 -51926353 - FLAM_A SINE Alu -3 130 1 3342 260 89 36 chr1 190738000 190739464 -51924889 - L1MEc LINE L1 -4756 1640 100 1754 292 192 21 chr1 190739464 190740526 -51923827 - L2 LINE L2 -172 3141 1894 1425 165 138 4 chr1 190741727 190741988 -51922365 + AluSx SINE Alu 1 296 -16 709 243 101 36 chr1 190742338 190742614 -51921739 - MLT1I LTR MaLR -7 402 109 200 255 21 0 chr1 190743210 190743257 -51921096 - L2 LINE L2 -16 3256 3209 712 192 16 0 chr1 190743262 190743387 -51920966 - MER44D DNA MER2_type 0 605 607 963 195 6 0 chr1 190743387 190743551 -51920802 - AluJb SINE Alu -19 293 129 3726 145 8 12 chr1 190743553 190744152 -51920201 + MSTA-int LTR MaLR 984 1580 0 1534 187 157 14 chr1 190744152 190744521 -51919832 + MSTA LTR MaLR 1 422 -6 4918 126 123 43 chr1 190744524 190745445 -51918908 - MSTA-int LTR MaLR -584 996 3 1885 161 130 18 chr1 190745447 190745832 -51918521 - MSTA LTR MaLR 0 428 1 228 256 0 0 chr1 190746288 190746331 -51918022 - LTR67 LTR ERVL -418 139 97 294 347 18 87 chr1 190746641 190746918 -51917435 + L2 LINE L2 2462 2719 -595 244 292 115 0 chr1 190746953 190747049 -51917304 + L2 LINE L2 2702 2808 -506 244 273 0 0 chr1 190747134 190747189 -51917164 + (TG)n Simple_repeat Simple_repeat 2 56 0 33 0 0 0 chr1 190748606 190748639 -51915714 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr1 190748675 190748701 -51915652 + AT_rich Low_complexity Low_complexity 1 26 0 1158 136 10 39 chr1 190749209 190749415 -51914938 + MER20 DNA MER1_type 1 200 -19 832 229 13 48 chr1 190750503 190750730 -51913623 + MER20 DNA MER1_type 1 219 0 22 94 0 0 chr1 190751260 190751324 -51913029 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr1 190751901 190751922 -51912431 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 190752720 190752751 -51911602 + AT_rich Low_complexity Low_complexity 1 31 0 252 197 0 53 chr1 190752813 190752889 -51911464 + A-rich Low_complexity Low_complexity 6 77 0 454 252 150 0 chr1 190754452 190754579 -51909774 - MER69 DNA AcHobo -2380 146 1 2519 213 97 18 chr1 190754905 190755558 -51908795 - MER67C LTR ERV1 0 710 7 1769 50 0 0 chr1 190755708 190755929 -51908424 - L1PA2 LINE L1 0 6155 5935 366 345 73 28 chr1 190756569 190756746 -51907607 - MIR3 SINE MIR -19 189 5 303 130 0 0 chr1 190756780 190756834 -51907519 + (T)n Simple_repeat Simple_repeat 1 54 0 1996 159 3 0 chr1 190757000 190757309 -51907044 - AluSq SINE Alu -3 310 1 455 328 38 12 chr1 190757382 190757800 -51906553 + L1ME3A LINE L1 3030 3458 -2688 678 201 110 6 chr1 190757897 190758061 -51906292 + MER39 LTR ERV1 3 183 -524 * 1212 197 63 27 chr1 190758059 190758358 -51905995 + MER39 LTR ERV1 300 609 -98 2258 128 0 0 chr1 190758504 190758816 -51905537 - AluSx SINE Alu 0 312 1 852 239 86 99 chr1 190758863 190759474 -51904879 + L1ME3A LINE L1 3723 4326 -1820 1929 165 7 0 chr1 190759474 190759814 -51904539 - AluSq SINE Alu 0 313 1 852 239 86 99 chr1 190759814 190759891 -51904462 + L1ME3A LINE L1 4326 4402 -1744 659 189 16 0 chr1 190759902 190760029 -51904324 + AluSg/x SINE Alu 178 306 -3 2551 247 37 75 chr1 190760029 190761655 -51902698 + L1ME3A LINE L1 4397 5944 -226 1617 131 0 20 chr1 190761655 190761936 -51902417 + AluSx SINE Alu 42 317 0 2551 247 37 75 chr1 190761936 190762143 -51902210 + L1ME3A LINE L1 5944 6157 -13 374 306 51 13 chr1 190762181 190762338 -51902015 - Charlie8 DNA MER1_type -2171 246 84 302 348 7 71 chr1 190763817 190763972 -51900381 - MIR3 SINE MIR -34 174 30 218 156 22 0 chr1 190765630 190765675 -51898678 + GA-rich Low_complexity Low_complexity 2 47 0 22 0 0 0 chr1 190766115 190766137 -51898216 + AT_rich Low_complexity Low_complexity 1 22 0 225 344 62 66 chr1 190766381 190766654 -51897699 + L2 LINE L2 3001 3272 0 464 293 140 65 chr1 190766710 190766952 -51897401 - MLT1K LTR MaLR -29 559 337 387 60 0 0 chr1 190766952 190767002 -51897351 + (CA)n Simple_repeat Simple_repeat 2 51 0 464 293 140 65 chr1 190767002 190767265 -51897088 - MLT1K LTR MaLR -251 337 16 21 57 0 0 chr1 190767487 190767522 -51896831 + AT_rich Low_complexity Low_complexity 1 35 0 517 254 81 51 chr1 190767602 190767799 -51896554 - MLT1G LTR MaLR 0 590 388 961 247 82 10 chr1 190767838 190768130 -51896223 + MER58B DNA MER1_type 28 340 -1 490 239 22 45 chr1 190768135 190768269 -51896084 - MLT1G LTR MaLR -298 292 162 514 175 193 0 chr1 190768270 190768384 -51895969 - L1MA6 LINE L1 -5 6295 6160 287 289 110 23 chr1 190769519 190769692 -51894661 - MIR SINE MIR -8 254 67 812 319 75 58 chr1 190769817 190770887 -51893466 - L2 LINE L2 -12 3301 2154 476 300 42 16 chr1 190771133 190771323 -51893030 + MIR SINE MIR 47 241 -21 633 250 87 66 chr1 190771987 190772443 -51891910 + MLT1J2 LTR MaLR 3 440 -10 219 408 0 40 chr1 190772938 190773090 -51891263 - L2 LINE L2 -181 3091 2946 251 340 96 43 chr1 190773150 190773524 -51890829 - L2 LINE L2 -427 2887 2494 1993 132 0 16 chr1 190773927 190774230 -51890123 - AluSx SINE Alu -14 298 1 234 0 0 0 chr1 190774383 190774409 -51889944 + (TG)n Simple_repeat Simple_repeat 1 26 0 214 171 0 0 chr1 190775154 190775195 -51889158 + (CAGAGA)n Simple_repeat Simple_repeat 1 41 0 371 209 0 55 chr1 190775536 190775627 -51888726 + HsTC2 DNA Tc2 1 86 -1812 2022 158 3 0 chr1 190776486 190776797 -51887556 - AluSx SINE Alu 0 312 1 1992 171 3 12 chr1 190777193 190777532 -51886821 - MER1B DNA MER1_type 0 337 2 494 344 127 37 chr1 190777650 190778499 -51885854 - L2 LINE L2 -244 3069 2298 1897 145 24 7 chr1 190778499 190778796 -51885557 + AluJb SINE Alu 3 304 -8 1964 106 14 10 chr1 190778801 190779093 -51885260 + AluSx SINE Alu 3 295 -17 494 344 127 37 chr1 190779093 190779312 -51885041 - L2 LINE L2 -1018 2295 1894 280 324 139 44 chr1 190779328 190779828 -51884525 + L2 LINE L2 2731 3259 -13 219 114 0 0 chr1 190779828 190779863 -51884490 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 578 277 78 7 chr1 190781267 190781498 -51882855 + MIR SINE MIR 3 249 -13 27 0 0 0 chr1 190783017 190783044 -51881309 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr1 190783884 190783906 -51880447 + AT_rich Low_complexity Low_complexity 1 22 0 185 294 0 0 chr1 190785565 190785616 -51878737 + L2 LINE L2 3259 3309 -4 366 23 0 0 chr1 190786021 190786064 -51878289 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 257 330 0 60 chr1 190786281 190786381 -51877972 + L2 LINE L2 2545 2638 -676 776 40 10 0 chr1 190786546 190786646 -51877707 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 207 0 0 0 chr1 190787200 190787223 -51877130 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 220 200 33 50 chr1 190789149 190789209 -51875144 + MIR SINE MIR 85 143 -65 182 206 176 44 chr1 190790970 190791038 -51873315 + L2 LINE L2 3196 3272 0 25 0 0 0 chr1 190791646 190791671 -51872682 + AT_rich Low_complexity Low_complexity 1 25 0 299 316 50 50 chr1 190793204 190793343 -51871010 + MIR SINE MIR 13 151 -111 1055 313 132 40 chr1 190793369 190794532 -51869821 - L2 LINE L2 0 3313 2040 279 0 0 0 chr1 190794955 190794986 -51869367 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 241 0 0 chr1 190795268 190795326 -51869027 - MIR SINE MIR -21 241 184 210 263 35 0 chr1 190795935 190795992 -51868361 + GA-rich Low_complexity Low_complexity 2 60 0 431 321 29 0 chr1 190798981 190799118 -51865235 - MIR3 SINE MIR -17 191 51 646 218 85 37 chr1 190799321 190799509 -51864844 - MER20 DNA MER1_type -4 215 19 186 71 0 0 chr1 190800302 190800330 -51864023 + (T)n Simple_repeat Simple_repeat 1 28 0 182 88 0 29 chr1 190800693 190800727 -51863626 + (TA)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr1 190801173 190801194 -51863159 + AT_rich Low_complexity Low_complexity 1 21 0 212 189 0 57 chr1 190801843 190801896 -51862457 + L2 LINE L2 3262 3311 -2 1789 128 64 27 chr1 190803208 190803504 -51860849 - AluSp SINE Alu -6 307 1 312 195 11 69 chr1 190803614 190803701 -51860652 - L1MC4 LINE L1 -1347 6695 6614 391 315 18 0 chr1 190803704 190803869 -51860484 - L1ME LINE L1 -430 5691 5524 284 0 28 0 chr1 190804141 190804177 -51860176 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 250 21 0 chr1 190804616 190804664 -51859689 - L3 LINE CR1 -1 1576 1528 1427 205 40 97 chr1 190804816 190805371 -51858982 - Charlie1b DNA MER1_type 0 523 1 366 355 33 45 chr1 190805404 190805649 -51858704 - L3 LINE CR1 -271 1306 1065 657 360 22 0 chr1 190805856 190806081 -51858272 - MIR SINE MIR -4 258 29 357 43 0 0 chr1 190806107 190806154 -51858199 + (TG)n Simple_repeat Simple_repeat 2 48 0 620 276 49 22 chr1 190807286 190807471 -51856882 + MIR SINE MIR 2 191 -71 197 95 0 48 chr1 190807505 190807547 -51856806 + (TTA)n Simple_repeat Simple_repeat 1 40 0 1531 53 4 66 chr1 190808743 190808969 -51855384 - AluY SINE Alu -2 309 98 33 43 0 0 chr1 190809002 190809049 -51855304 + AT_rich Low_complexity Low_complexity 1 47 0 1632 141 30 30 chr1 190809655 190809924 -51854429 + AluJb SINE Alu 34 302 -10 203 305 0 0 chr1 190810229 190810288 -51854065 + L3b LINE CR1 1234 1292 -291 21 0 0 0 chr1 190810403 190810424 -51853929 + AT_rich Low_complexity Low_complexity 1 21 0 257 241 166 69 chr1 190810762 190810907 -51853446 - MLT1L LTR MaLR -259 356 198 243 279 76 38 chr1 190811269 190811348 -51853005 - L2 LINE L2 -22 3250 3169 249 237 103 31 chr1 190811739 190811836 -51852517 - L2 LINE L2 -251 3062 2959 643 187 81 0 chr1 190811875 190811998 -51852355 - FLAM_A SINE Alu 0 133 1 276 304 0 0 chr1 190812645 190812724 -51851629 + MER116 DNA Mariner 2 80 0 21 71 0 0 chr1 190813131 190813173 -51851180 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 190814124 190814145 -51850208 + AT_rich Low_complexity Low_complexity 1 21 0 320 123 37 86 chr1 190814364 190814445 -51849908 - L1MA8 LINE L1 -112 6179 6103 885 194 99 26 chr1 190814446 190814678 -51849675 - MER2 DNA MER2_type -1 344 96 452 141 35 0 chr1 190814678 190814763 -51849590 + L1MA7 LINE L1 6202 6289 -2 561 352 84 52 chr1 190814788 190815584 -51848769 + L2 LINE L2 1782 2603 -711 363 263 176 35 chr1 190815796 190816123 -51848230 + MLT1L LTR MaLR 208 610 -5 1742 135 19 57 chr1 190816126 190816444 -51847909 - AluSx SINE Alu -5 307 2 191 370 89 38 chr1 190816664 190816899 -51847454 + L2 LINE L2 2845 3091 -181 453 280 43 99 chr1 190816970 190817181 -51847172 + MIR SINE MIR 43 241 -21 180 135 56 34 chr1 190818159 190818248 -51846105 + (TATAA)n Simple_repeat Simple_repeat 2 92 0 1445 217 22 3 chr1 190818394 190818707 -51845646 - L1MD3 LINE L1 -5 7990 7672 361 343 66 22 chr1 190821385 190821566 -51842787 - MIR SINE MIR -34 228 40 1995 66 6 117 chr1 190822897 190823231 -51841122 - AluSc SINE Alu -12 297 1 1780 108 12 0 chr1 190823873 190824131 -51840222 + AluSx SINE Alu 39 299 -13 181 330 102 45 chr1 190824231 190824407 -51839946 - L2 LINE L2 -564 2750 2565 340 330 63 47 chr1 190824516 190824707 -51839646 + MIR SINE MIR 8 201 -61 24 67 0 0 chr1 190824867 190824912 -51839441 + AT_rich Low_complexity Low_complexity 1 45 0 451 311 70 49 chr1 190826671 190826915 -51837438 + MIR SINE MIR 1 249 -13 331 267 14 62 chr1 190827242 190827388 -51836965 + MER5B DNA MER1_type 1 139 -39 234 294 24 12 chr1 190827625 190827710 -51836643 + MER103 DNA DNA 80 165 -1 23 33 0 0 chr1 190828072 190828102 -51836251 + AT_rich Low_complexity Low_complexity 1 30 0 456 284 78 40 chr1 190828368 190828664 -51835689 - HAL1 LINE L1 -1446 1061 755 230 289 72 0 chr1 190828685 190828768 -51835585 + MIR3 SINE MIR 98 186 -22 386 302 33 66 chr1 190828909 190829121 -51835232 + MIR SINE MIR 58 262 0 237 33 0 0 chr1 190830658 190830688 -51833665 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1257 171 97 19 chr1 190830691 190830949 -51833404 - AluJo SINE Alu -34 278 1 31 44 0 0 chr1 190831500 190831545 -51832808 + AT_rich Low_complexity Low_complexity 1 45 0 272 48 24 0 chr1 190831733 190831775 -51832578 + (TG)n Simple_repeat Simple_repeat 1 43 0 449 275 223 28 chr1 190832501 190832712 -51831641 + MIR SINE MIR 9 260 -2 21 57 0 0 chr1 190832717 190832752 -51831601 + AT_rich Low_complexity Low_complexity 1 35 0 293 338 186 31 chr1 190834538 190835246 -51829107 + L2 LINE L2 1858 2675 -639 544 276 49 25 chr1 190835478 190835681 -51828672 + L2 LINE L2 3106 3313 0 26 30 0 0 chr1 190836042 190836075 -51828278 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 190836503 190836524 -51827829 + AT_rich Low_complexity Low_complexity 1 21 0 1786 176 36 70 chr1 190837574 190838131 -51826222 - MLT2A2 LTR ERVL 0 554 3 213 154 0 0 chr1 190838373 190838412 -51825941 + CT-rich Low_complexity Low_complexity 1 39 0 255 281 31 0 chr1 190838413 190838477 -51825876 + polypyrimidine Low_complexity Low_complexity 4 69 0 31 88 0 0 chr1 190839029 190839109 -51825244 + AT_rich Low_complexity Low_complexity 1 80 0 23 0 0 0 chr1 190839511 190839534 -51824819 + AT_rich Low_complexity Low_complexity 1 23 0 2306 87 0 0 chr1 190839543 190839832 -51824521 + AluSc SINE Alu 1 289 -20 201 163 0 0 chr1 190839832 190839881 -51824472 + (TA)n Simple_repeat Simple_repeat 2 50 0 205 278 0 17 chr1 190840156 190840271 -51824082 + (TA)n Simple_repeat Simple_repeat 2 114 0 26 30 0 0 chr1 190842272 190842305 -51822048 + AT_rich Low_complexity Low_complexity 1 33 0 202 212 18 26 chr1 190842347 190842460 -51821893 + (TA)n Simple_repeat Simple_repeat 1 112 0 286 296 101 6 chr1 190842644 190842870 -51821483 - L1ME LINE L1 -655 5511 5265 212 274 98 49 chr1 190845111 190845213 -51819140 + L2 LINE L2 3200 3306 -7 23 33 0 0 chr1 190846373 190846403 -51817950 + AT_rich Low_complexity Low_complexity 1 30 0 304 257 38 19 chr1 190846450 190846555 -51817798 + MIR SINE MIR 48 154 -108 1074 195 0 9 chr1 190848320 190848535 -51815818 + L1PA16 LINE L1 5946 6158 -8 1987 137 30 0 chr1 190849085 190849384 -51814969 - AluSx SINE Alu -4 308 1 226 335 48 96 chr1 190849386 190849783 -51814570 + L2 LINE L2 2890 3267 -5 289 361 23 15 chr1 190850039 190850172 -51814181 - L2 LINE L2 -3 3269 3136 24 53 0 0 chr1 190850617 190850655 -51813698 + AT_rich Low_complexity Low_complexity 1 38 0 201 226 16 16 chr1 190851424 190851486 -51812867 + A-rich Low_complexity Low_complexity 4 65 0 242 268 12 24 chr1 190851991 190852073 -51812280 + CT-rich Low_complexity Low_complexity 2 82 0 1482 175 38 52 chr1 190852804 190853170 -51811183 + MER46B DNA MER2_type 1 236 0 3386 209 55 13 chr1 190853566 190854469 -51809884 - L1ME LINE L1 -937 5209 4269 1849 92 111 4 chr1 190854516 190854787 -51809566 - AluSg SINE Alu -10 300 1 1333 246 121 32 chr1 190854978 190856173 -51808180 + L1ME2 LINE L1 4794 6159 -5 1936 47 0 31 chr1 190858785 190859059 -51805294 - AluY SINE Alu 0 300 35 605 204 29 7 chr1 190859320 190859457 -51804896 + MIR SINE MIR 93 232 -30 226 303 0 37 chr1 190861460 190861569 -51802784 + L2 LINE L2 2135 2239 -1075 444 289 131 31 chr1 190862518 190862906 -51801447 - L1ME4a LINE L1 -218 5903 5477 2123 103 0 0 chr1 190863232 190863569 -51800784 - AluSx SINE Alu 0 337 1 2192 101 7 0 chr1 190863990 190864287 -51800066 - AluSx SINE Alu -13 299 1 211 333 40 47 chr1 190864512 190864662 -51799691 + L2 LINE L2 2835 2983 -289 32 75 0 0 chr1 190865444 190865511 -51798842 + AT_rich Low_complexity Low_complexity 1 67 0 39 38 0 0 chr1 190865806 190865859 -51798494 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr1 190866001 190866029 -51798324 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 190866152 190866184 -51798169 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr1 190866771 190866792 -51797561 + (TA)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr1 190868258 190868287 -51796066 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr1 190868335 190868362 -51795991 + (TC)n Simple_repeat Simple_repeat 2 28 0 2177 131 0 0 chr1 190868447 190868760 -51795593 - AluSq SINE Alu 0 313 1 10029 170 20 3 chr1 190868938 190871472 -51792881 - L1MA3 LINE L1 -275 6030 3449 5210 200 29 8 chr1 190871476 190872919 -51791434 + L1M1 LINE L1 3162 4655 -2910 1964 156 0 13 chr1 190872919 190873221 -51791132 + AluSx SINE Alu 1 298 -14 5210 200 29 8 chr1 190873221 190873423 -51790930 + L1M1 LINE L1 4655 4851 -2714 231 88 0 0 chr1 190874076 190874110 -51790243 + (TTG)n Simple_repeat Simple_repeat 3 36 0 353 301 85 46 chr1 190874818 190874971 -51789382 - MIR SINE MIR -86 176 18 1950 141 16 3 chr1 190875219 190875524 -51788829 - AluSx SINE Alu 0 312 4 398 234 40 80 chr1 190875637 190875838 -51788515 + L2 LINE L2 3117 3309 -4 409 320 14 7 chr1 190875903 190876050 -51788303 - MIR SINE MIR -113 149 2 30 0 0 0 chr1 190876599 190876629 -51787724 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 190876825 190876848 -51787505 + AT_rich Low_complexity Low_complexity 1 23 0 192 200 0 0 chr1 190877340 190877380 -51786973 + CT-rich Low_complexity Low_complexity 3 42 0 1731 171 4 7 chr1 190877596 190877906 -51786447 - AluSx SINE Alu 0 312 4 383 400 41 7 chr1 190877982 190878127 -51786226 - L2 LINE L2 0 3272 3123 573 240 83 36 chr1 190878678 190878870 -51785483 + L2 LINE L2 3111 3311 -2 27 29 0 0 chr1 190879622 190879656 -51784697 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr1 190880986 190881018 -51783335 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr1 190881132 190881161 -51783192 + AT_rich Low_complexity Low_complexity 1 29 0 272 338 23 38 chr1 190881252 190881385 -51782968 - MIR SINE MIR -125 137 7 42 82 0 0 chr1 190881462 190881560 -51782793 + AT_rich Low_complexity Low_complexity 1 98 0 254 287 250 9 chr1 190881680 190881788 -51782565 + L2 LINE L2 3139 3272 0 24 0 0 0 chr1 190883410 190883434 -51780919 + AT_rich Low_complexity Low_complexity 1 24 0 511 331 47 31 chr1 190883523 190883777 -51780576 + MIR SINE MIR 1 258 -4 240 216 124 41 chr1 190883802 190883899 -51780454 + L1ME LINE L1 5619 5723 -447 189 0 0 0 chr1 190883899 190883920 -51780433 + (A)n Simple_repeat Simple_repeat 1 21 0 319 361 42 0 chr1 190885160 190885279 -51779074 - MIR SINE MIR -126 136 13 25 0 0 0 chr1 190886338 190886363 -51777990 + AT_rich Low_complexity Low_complexity 1 25 0 226 228 11 22 chr1 190890795 190890887 -51773466 + T-rich Low_complexity Low_complexity 5 95 0 1158 244 64 69 chr1 190891025 190891574 -51772779 - MLT1H LTR MaLR 0 549 4 247 351 82 23 chr1 190891839 190892010 -51772343 - L2 LINE L2 -193 3079 2899 23 68 0 0 chr1 190894972 190895016 -51769337 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 190895145 190895174 -51769179 + AT_rich Low_complexity Low_complexity 1 29 0 367 172 23 35 chr1 190895721 190895808 -51768545 + MER53 DNA DNA 102 187 -2 7329 165 17 19 chr1 190895853 190897252 -51767101 - L1PA13 LINE L1 -1679 4467 3071 5798 97 34 1 chr1 190897253 190897424 -51766929 + L1PA13 LINE L1 4462 4626 -1537 243 0 0 0 chr1 190897424 190897451 -51766902 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5798 97 34 1 chr1 190897451 190898945 -51765408 + L1PA13 LINE L1 4626 6144 -19 230 297 50 45 chr1 190899045 190899267 -51765086 - HAL1b LINE L1 -979 369 147 239 248 118 42 chr1 190899459 190899697 -51764656 - HAL1 LINE L1 -1284 1223 968 380 219 42 31 chr1 190900156 190900252 -51764101 - L1MC1 LINE L1 -17 6316 6220 21 57 0 0 chr1 190901962 190901997 -51762356 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 190902109 190902140 -51762213 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr1 190902279 190902312 -51762041 + AT_rich Low_complexity Low_complexity 1 33 0 414 0 0 0 chr1 190902889 190902935 -51761418 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 183 136 51 0 chr1 190902939 190902998 -51761355 + (TA)n Simple_repeat Simple_repeat 1 62 0 23 54 0 0 chr1 190903296 190903333 -51761020 + AT_rich Low_complexity Low_complexity 1 37 0 261 221 0 0 chr1 190903888 190903956 -51760397 + GA-rich Low_complexity Low_complexity 1 68 0 1678 175 0 24 chr1 190904349 190904646 -51759707 - AluJb SINE Alu -22 290 1 194 307 68 23 chr1 190906784 190906872 -51757481 + MIR SINE MIR 60 151 -111 211 219 123 14 chr1 190906874 190906947 -51757406 - MIR SINE MIR -2 260 180 377 370 26 0 chr1 190906997 190907151 -51757202 + MIR SINE MIR 105 262 0 238 270 256 15 chr1 190907151 190907288 -51757065 - MIR SINE MIR -86 176 7 261 335 71 32 chr1 190907700 190907855 -51756498 - MIR SINE MIR -24 238 78 529 242 172 0 chr1 190908022 190908179 -51756174 - MLT1J LTR MaLR -327 184 1 342 0 0 0 chr1 190908529 190908567 -51755786 + (CA)n Simple_repeat Simple_repeat 2 39 0 766 181 6 60 chr1 190909643 190909809 -51754544 + Tigger1 DNA MER2_type 1 157 -2261 * 1211 96 102 0 chr1 190909798 190909995 -51754358 + Tigger1 DNA MER2_type 2202 2418 0 286 338 120 35 chr1 190910114 190910682 -51753671 + L2 LINE L2 1360 1975 -1339 320 302 24 27 chr1 190911776 190911972 -51752381 + GA-rich Low_complexity Low_complexity 1 195 0 543 291 61 18 chr1 190912163 190912506 -51751847 + L1M4 LINE L1 4915 5272 -874 180 111 0 0 chr1 190912854 190912881 -51751472 + (TATG)n Simple_repeat Simple_repeat 2 28 0 276 30 0 0 chr1 190913121 190913154 -51751199 + (TG)n Simple_repeat Simple_repeat 2 34 0 2008 174 9 0 chr1 190913167 190913512 -51750841 - MER7A DNA MER2_type 0 346 1 2228 80 59 0 chr1 190913873 190914162 -51750191 + AluSp SINE Alu 1 306 -7 414 0 0 0 chr1 190914493 190914539 -51749814 + (A)n Simple_repeat Simple_repeat 1 46 0 306 333 0 10 chr1 190915110 190915206 -51749147 + MLT1H1 LTR MaLR 91 185 -370 243 131 54 54 chr1 190916021 190916189 -51748164 + (TATAA)n Simple_repeat Simple_repeat 2 169 0 208 140 35 18 chr1 190916193 190916250 -51748103 + (TA)n Simple_repeat Simple_repeat 2 59 0 229 350 19 48 chr1 190916388 190916491 -51747862 - L2 LINE L2 0 3272 3173 473 243 94 84 chr1 190916609 190916918 -51747435 - MLT1J LTR MaLR -199 312 1 252 297 69 28 chr1 190917004 190917149 -51747204 - L2 LINE L2 -214 3058 2908 213 186 136 0 chr1 190917182 190917241 -51747112 + L2 LINE L2 3205 3271 -1 205 297 159 28 chr1 190917379 190917524 -51746829 - L2 LINE L2 -2 3311 3148 487 277 117 26 chr1 190918299 190918530 -51745823 + MIR SINE MIR 1 252 -10 334 325 0 26 chr1 190920873 190920990 -51743363 + MLT1J1 LTR MaLR 2 115 -331 4508 207 30 6 chr1 190921028 190921860 -51742493 - MER21B LTR ERV1 -11 852 1 409 263 117 73 chr1 190922300 190922479 -51741874 - MER5A DNA MER1_type -2 187 1 444 139 0 0 chr1 190922690 190922769 -51741584 + (CCAA)n Simple_repeat Simple_repeat 2 80 0 25 0 0 0 chr1 190923673 190923698 -51740655 + AT_rich Low_complexity Low_complexity 1 25 0 186 286 0 0 chr1 190925444 190925486 -51738867 - MIR3 SINE MIR -7 201 160 1725 184 50 22 chr1 190926622 190926986 -51737367 - THE1C LTR MaLR -1 374 1 8673 140 36 39 chr1 190926986 190928568 -51735785 - THE1C-int LTR MaLR 0 1580 4 1697 163 70 20 chr1 190928571 190928928 -51735425 - THE1C LTR MaLR 0 375 1 739 269 101 47 chr1 190929081 190929487 -51734866 + MSTC LTR MaLR 1 428 0 1111 177 38 5 chr1 190929551 190929760 -51734593 - MER20 DNA MER1_type 0 219 4 219 69 0 0 chr1 190930043 190930072 -51734281 + (T)n Simple_repeat Simple_repeat 1 29 0 487 360 26 31 chr1 190931689 190932078 -51732275 - L1MEc LINE L1 -5973 423 37 1160 90 96 0 chr1 190932172 190932350 -51732003 + MER30 DNA MER1_type 4 198 -32 204 182 0 0 chr1 190932814 190932858 -51731495 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 344 339 8 8 chr1 190933768 190933889 -51730464 - MIR SINE MIR -95 167 47 439 316 75 11 chr1 190934094 190934268 -51730085 + MIR SINE MIR 5 189 -73 22 0 0 0 chr1 190935413 190935435 -51728918 + AT_rich Low_complexity Low_complexity 1 22 0 2023 169 26 10 chr1 190935867 190936251 -51728102 + MLT1B LTR MaLR 1 390 0 579 292 46 41 chr1 190936581 190936623 -51727730 - MIR SINE MIR 0 262 222 2014 123 0 0 chr1 190936623 190936919 -51727434 - AluSc SINE Alu 0 298 3 579 292 46 41 chr1 190936919 190937070 -51727283 - MIR SINE MIR -40 222 67 2144 128 3 0 chr1 190937437 190937741 -51726612 - AluSp SINE Alu -6 307 3 21 0 0 0 chr1 190938166 190938187 -51726166 + AT_rich Low_complexity Low_complexity 1 21 0 307 282 56 0 chr1 190938638 190938709 -51725644 - MER2 DNA MER2_type -2 343 269 1329 166 5 5 chr1 190938738 190938955 -51725398 + AluJb SINE Alu 82 298 -14 1163 177 0 0 chr1 190938955 190939147 -51725206 - MER2 DNA MER2_type -138 207 16 682 350 68 0 chr1 190939319 190939642 -51724711 + MLT1I LTR MaLR 65 409 0 349 330 17 9 chr1 190939879 190939994 -51724359 - MIR3 SINE MIR -39 169 54 369 347 142 21 chr1 190941260 190941640 -51722713 + L2 LINE L2 2591 3020 -252 199 379 11 11 chr1 190941731 190941826 -51722527 + L2 LINE L2 3208 3302 -11 205 292 0 0 chr1 190942659 190942707 -51721646 - L2 LINE L2 -12 3260 3213 663 209 0 0 chr1 190942817 190942951 -51721402 + L1M4 LINE L1 4673 4806 -1340 352 113 19 0 chr1 190942970 190943023 -51721330 + Tigger2 DNA MER2_type 1171 1224 -1494 285 208 69 0 chr1 190943031 190943103 -51721250 - MLT1H LTR MaLR -453 96 20 240 267 40 0 chr1 190943147 190943222 -51721131 - MLT1H-int LTR MaLR -25 1346 1269 3106 177 23 15 chr1 190943597 190944212 -51720141 + Tigger2 DNA MER2_type 1 620 -2098 3921 119 76 17 chr1 190944212 190945172 -51719181 - MER11A LTR ERVK 0 1266 1 * 13028 145 14 10 chr1 190945172 190947267 -51717086 + Tigger2 DNA MER2_type 615 2717 -1 1312 105 21 11 chr1 190947565 190947824 -51716529 - L1P LINE L1 -705 5426 5166 286 165 84 17 chr1 190948074 190948169 -51716184 - MLT1H LTR MaLR 0 567 462 232 346 38 57 chr1 190950037 190950164 -51714189 + L2 LINE L2 2904 3029 -243 1918 208 113 24 chr1 190950164 190950625 -51713728 - MLT1D LTR MaLR -3 502 1 232 346 38 57 chr1 190950625 190950656 -51713697 + L2 LINE L2 3029 3059 -213 354 319 92 6 chr1 190953491 190953654 -51710699 - MIR SINE MIR -72 190 14 375 319 89 6 chr1 190953990 190954159 -51710194 + MIR SINE MIR 74 256 -6 184 354 49 0 chr1 190955061 190955143 -51709210 + MIR SINE MIR 92 177 -85 228 306 16 0 chr1 190955593 190955655 -51708698 - L2 LINE L2 -831 2483 2421 3814 158 37 41 chr1 190957799 190958576 -51705777 - LTR1 LTR ERV1 0 785 12 17296 151 24 16 chr1 190958637 190961473 -51702880 - HUERS-P2 LTR ERV1 0 3088 230 539 184 24 64 chr1 190961467 190961592 -51702761 - HUERS-P2 LTR ERV1 -2968 120 1 * 4114 133 73 29 chr1 190961594 190962344 -51702009 - LTR1 LTR ERV1 -2 783 1 761 206 83 25 chr1 190963435 190963621 -51700732 - MLT1A1 LTR MaLR 0 365 165 180 0 0 0 chr1 190963621 190963641 -51700712 + (GA)n Simple_repeat Simple_repeat 2 21 0 761 206 83 25 chr1 190963641 190963658 -51700695 - MLT1A1 LTR MaLR -200 165 150 1525 189 81 3 chr1 190963659 190963944 -51700409 + MLT1A1 LTR MaLR 59 365 0 541 73 0 24 chr1 190965060 190965142 -51699211 + MADE1 DNA Mariner 1 80 0 962 310 85 21 chr1 190965445 190965544 -51698809 - LTR16B LTR ERVL 0 464 373 1668 189 7 7 chr1 190965544 190965830 -51698523 + AluJo SINE Alu 1 286 -26 942 73 0 0 chr1 190965830 190965966 -51698387 + (GGAA)n Simple_repeat Simple_repeat 3 138 0 962 310 85 21 chr1 190965966 190966301 -51698052 - LTR16B LTR ERVL -90 374 1 2014 235 73 31 chr1 190966507 190967095 -51697258 - MLT1E2 LTR MaLR 0 626 14 2029 281 84 49 chr1 190969543 190970788 -51693565 - L2 LINE L2 0 3313 2002 226 297 36 45 chr1 190970781 190970892 -51693461 - MIR SINE MIR -125 137 28 * 2122 142 0 0 chr1 190971162 190971472 -51692881 + AluSq SINE Alu 1 310 -3 730 187 173 0 chr1 190971483 190971622 -51692731 - FRAM SINE Alu -16 160 1 308 281 91 25 chr1 190971986 190972107 -51692246 - MIR SINE MIR -64 144 16 243 250 16 0 chr1 190972107 190972171 -51692182 + (TG)n Simple_repeat Simple_repeat 2 66 0 247 260 68 0 chr1 190972449 190972522 -51691831 - MIR SINE MIR 0 262 185 21 0 0 0 chr1 190972522 190972543 -51691810 + AT_rich Low_complexity Low_complexity 1 21 0 370 203 40 0 chr1 190972545 190972873 -51691480 + (TA)n Simple_repeat Simple_repeat 1 341 0 1244 196 70 64 chr1 190973864 190974237 -51690116 - LTR8A LTR ERV1 0 727 353 2027 141 0 13 chr1 190974237 190974541 -51689812 + AluSx SINE Alu 2 301 -11 208 257 10 40 chr1 190974982 190975083 -51689270 + T-rich Low_complexity Low_complexity 2 99 0 257 93 23 58 chr1 190975601 190975687 -51688666 + (TTA)n Simple_repeat Simple_repeat 2 84 0 1809 167 0 0 chr1 190976592 190976868 -51687485 - AluSx SINE Alu -32 280 5 24 32 0 0 chr1 190977104 190977135 -51687218 + AT_rich Low_complexity Low_complexity 1 31 0 1434 245 105 45 chr1 190977254 190977760 -51686593 - MLT1F LTR MaLR -6 536 1 346 295 55 106 chr1 190977930 190978366 -51685987 + L2 LINE L2 2593 2998 -274 1771 168 20 0 chr1 190978507 190978810 -51685543 - AluSx SINE Alu -3 309 1 439 282 61 31 chr1 190979059 190979222 -51685131 + L2 LINE L2 3105 3272 0 361 253 32 4 chr1 190980712 190980825 -51683528 + HsTC2 DNA Tc2 1 1832 -66 206 83 56 0 chr1 190980825 190980861 -51683492 + CT-rich Low_complexity Low_complexity 1 38 0 433 298 0 0 chr1 190981090 190981194 -51683159 - L2 LINE L2 0 3313 3210 200 200 0 0 chr1 190981522 190981567 -51682786 + MIR SINE MIR 148 192 -70 1880 138 26 13 chr1 190981657 190981962 -51682391 + AluSx SINE Alu 1 309 -3 342 333 48 6 chr1 190983165 190983333 -51681020 - MIR SINE MIR -16 246 72 307 241 106 71 chr1 190983373 190983543 -51680810 - L1ME LINE L1 -279 5842 5667 4576 182 15 72 chr1 190983548 190984285 -51680068 + L1MA7 LINE L1 4716 5493 -798 2342 105 10 0 chr1 190984285 190984590 -51679763 - AluSc SINE Alu -1 308 1 4576 182 15 72 chr1 190984590 190985451 -51678902 + L1MA7 LINE L1 5493 6220 -71 1589 141 0 4 chr1 190985451 190985692 -51678661 + AluSq SINE Alu 74 313 0 4576 182 15 72 chr1 190985692 190985760 -51678593 + L1MA7 LINE L1 6220 6290 -1 189 0 0 0 chr1 190985980 190986001 -51678352 + (A)n Simple_repeat Simple_repeat 1 21 0 322 271 83 68 chr1 190986504 190986696 -51677657 - L1ME LINE L1 -2359 5449 5255 189 319 118 80 chr1 190987068 190988175 -51676178 - L2 LINE L2 -593 2721 1573 194 246 195 74 chr1 190988255 190988470 -51675883 - L2 LINE L2 -1900 1414 1174 24 67 0 0 chr1 190990270 190990315 -51674038 + AT_rich Low_complexity Low_complexity 1 45 0 2069 132 0 10 chr1 190993667 190993970 -51670383 - AluSc SINE Alu -9 300 1 22 35 0 0 chr1 190994697 190994726 -51669627 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1 190995209 190995230 -51669123 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 234 193 35 18 chr1 190995232 190995289 -51669064 + GA-rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr1 190995768 190995803 -51668550 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 190996845 190996881 -51667472 + AT_rich Low_complexity Low_complexity 1 36 0 203 339 59 17 chr1 190998749 190998867 -51665486 + L2 LINE L2 3180 3302 -11 243 63 95 0 chr1 190999435 190999498 -51664855 + (TA)n Simple_repeat Simple_repeat 1 69 0 321 336 37 54 chr1 190999659 190999957 -51664396 + MARNA DNA Mariner 262 554 -32 7227 41 7 7 chr1 191002047 191002948 -51661405 - L1PA5 LINE L1 0 6154 5254 11676 36 3 0 chr1 191002955 191004380 -51659973 + L1PA5 LINE L1 3821 5249 -897 416 251 6 23 chr1 191004482 191004657 -51659696 + GA-rich Low_complexity Low_complexity 3 174 0 22 35 0 0 chr1 191005026 191005055 -51659298 + AT_rich Low_complexity Low_complexity 1 29 0 199 91 23 23 chr1 191006798 191006842 -51657511 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 267 31 0 0 chr1 191007912 191007944 -51656409 + (TG)n Simple_repeat Simple_repeat 1 32 0 752 108 0 8 chr1 191008524 191008644 -51655709 - AluY SINE Alu -14 297 179 2302 124 25 3 chr1 191008901 191009257 -51655096 + THE1B LTR MaLR 1 364 0 544 350 34 19 chr1 191009311 191009570 -51654783 + L2 LINE L2 2772 3041 -272 804 328 49 31 chr1 191009681 191010068 -51654285 - L2 LINE L2 0 3313 2920 351 276 110 14 chr1 191010076 191010221 -51654132 + L2 LINE L2 3154 3312 -1 315 304 65 0 chr1 191010229 191010321 -51654032 - MIR SINE MIR -112 150 53 354 279 87 0 chr1 191010627 191010757 -51653596 + MIR3 SINE MIR 57 198 -10 1693 185 3 3 chr1 191011184 191011513 -51652840 - AluJo SINE Alu 0 329 1 239 188 0 31 chr1 191012611 191012675 -51651678 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 21 0 0 0 chr1 191012676 191012697 -51651656 + AT_rich Low_complexity Low_complexity 1 21 0 216 344 15 30 chr1 191014675 191014806 -51649547 + MIR SINE MIR 68 196 -66 272 313 105 43 chr1 191014820 191014965 -51649388 + MIR SINE MIR 11 159 -49 602 60 12 0 chr1 191014974 191015057 -51649296 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 1463 179 54 14 chr1 191015416 191015696 -51648657 - AluJb SINE Alu -21 291 1 601 204 19 38 chr1 191015780 191015937 -51648416 + L1MB3 LINE L1 5652 5805 -378 23 78 0 0 chr1 191015938 191015989 -51648364 + AT_rich Low_complexity Low_complexity 1 51 0 1825 170 30 30 chr1 191016000 191016395 -51647958 + L1MB3 LINE L1 5787 6181 -2 23 33 0 0 chr1 191016579 191016609 -51647744 + AT_rich Low_complexity Low_complexity 1 30 0 518 328 39 15 chr1 191016907 191017245 -51647108 + L1ME3A LINE L1 5604 5949 -221 491 312 14 7 chr1 191017283 191017421 -51646932 + MER91C DNA MER1_type 2 140 0 284 116 0 0 chr1 191018552 191018595 -51645758 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 25 75 0 0 chr1 191021993 191022046 -51642307 + AT_rich Low_complexity Low_complexity 1 53 0 236 354 111 20 chr1 191023867 191024065 -51640288 - L3 LINE CR1 -566 1011 796 380 259 233 0 chr1 191024831 191024947 -51639406 + MER5A DNA MER1_type 41 183 -6 22 0 0 0 chr1 191025479 191025501 -51638852 + AT_rich Low_complexity Low_complexity 1 22 0 1372 223 0 14 chr1 191025577 191025894 -51638459 + AluJb SINE Alu 6 318 0 315 0 0 0 chr1 191026292 191026327 -51638026 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr1 191026326 191026346 -51638007 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 822 223 71 5 chr1 191027020 191027204 -51637149 + MER20 DNA MER1_type 22 217 -2 24 32 0 0 chr1 191028354 191028385 -51635968 + AT_rich Low_complexity Low_complexity 1 31 0 286 308 86 8 chr1 191029636 191029753 -51634600 + MIR3 SINE MIR 77 202 -6 24 32 0 0 chr1 191031706 191031737 -51632616 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr1 191032833 191032864 -51631489 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr1 191033150 191033196 -51631157 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 191033843 191033864 -51630489 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 191035507 191035530 -51628823 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 191038793 191038817 -51625536 + AT_rich Low_complexity Low_complexity 1 24 0 195 100 0 0 chr1 191040144 191040174 -51624179 + (A)n Simple_repeat Simple_repeat 1 30 0 1259 261 86 35 chr1 191041865 191042435 -51621918 + L2 LINE L2 2516 3152 -161 1970 111 53 39 chr1 191042435 191042794 -51621559 - THE1B LTR MaLR 0 364 1 1259 261 86 35 chr1 191042794 191042960 -51621393 + L2 LINE L2 3152 3308 -5 22 0 0 0 chr1 191043904 191043926 -51620427 + AT_rich Low_complexity Low_complexity 1 22 0 729 196 65 0 chr1 191045144 191045282 -51619071 + MLT2D LTR ERVL 220 366 -48 216 302 0 0 chr1 191046602 191046665 -51617688 + CT-rich Low_complexity Low_complexity 2 64 0 14414 140 24 5 chr1 191048206 191050579 -51613774 + Tigger1 DNA MER2_type 1 2418 0 2037 154 0 0 chr1 191051590 191051901 -51612452 - AluSx SINE Alu -1 311 1 703 196 57 19 chr1 191052505 191052663 -51611690 + AluJo SINE Alu 123 286 -26 1152 182 0 0 chr1 191053021 191053213 -51611140 - AluSx SINE Alu -120 192 1 521 15 15 0 chr1 191053226 191053292 -51611061 + (TA)n Simple_repeat Simple_repeat 1 67 0 22 0 0 0 chr1 191054149 191054171 -51610182 + AT_rich Low_complexity Low_complexity 1 22 0 428 345 67 10 chr1 191054558 191054752 -51609601 + MIR SINE MIR 48 252 -10 245 281 0 0 chr1 191056956 191057020 -51607333 - MIR3 SINE MIR -35 173 110 21 0 0 0 chr1 191058839 191058860 -51605493 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1 191059438 191059465 -51604888 + AT_rich Low_complexity Low_complexity 1 27 0 244 200 31 0 chr1 191061889 191061954 -51602399 + (TA)n Simple_repeat Simple_repeat 1 67 0 23 54 0 0 chr1 191062627 191062664 -51601689 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr1 191062952 191062978 -51601375 + AT_rich Low_complexity Low_complexity 1 26 0 231 36 0 0 chr1 191064060 191064088 -51600265 + (TA)n Simple_repeat Simple_repeat 1 28 0 184 125 42 0 chr1 191065875 191065902 -51598451 + GA-rich Low_complexity Low_complexity 1 25 -25 180 111 0 0 chr1 191065902 191065929 -51598424 + (TG)n Simple_repeat Simple_repeat 1 27 0 184 125 42 0 chr1 191065929 191065949 -51598404 + GA-rich Low_complexity Low_complexity 25 50 0 22 0 0 0 chr1 191066989 191067011 -51597342 + AT_rich Low_complexity Low_complexity 1 22 0 223 253 58 35 chr1 191068968 191069055 -51595298 - MIR3 SINE MIR -21 187 99 247 361 127 0 chr1 191069357 191069523 -51594830 - MIR SINE MIR -25 237 51 1077 341 157 38 chr1 191070700 191070944 -51593409 + L2 LINE L2 539 753 -2561 2425 74 3 0 chr1 191070944 191071256 -51593097 - AluSp SINE Alu 0 313 1 1077 341 157 38 chr1 191071256 191071540 -51592813 + L2 LINE L2 753 1002 -2312 2463 81 0 0 chr1 191071540 191071848 -51592505 - AluY SINE Alu -3 308 1 1077 341 157 38 chr1 191071848 191072569 -51591784 + L2 LINE L2 1002 1636 -1678 2868 70 0 3 chr1 191072569 191072943 -51591410 + L1PA6 LINE L1 5777 6149 -5 1077 341 157 38 chr1 191072943 191073676 -51590677 + L2 LINE L2 1636 2758 -556 1059 318 114 26 chr1 191074186 191075070 -51589283 + L2 LINE L2 2365 3313 0 23 0 0 0 chr1 191075076 191075099 -51589254 + AT_rich Low_complexity Low_complexity 1 23 0 2308 94 0 0 chr1 191075327 191075634 -51588719 - AluY SINE Alu -4 307 1 2122 123 0 0 chr1 191076064 191076384 -51587969 + AluSx SINE Alu 1 312 0 214 222 0 83 chr1 191076461 191076533 -51587820 - MIR SINE MIR -78 184 119 662 227 23 0 chr1 191077166 191077294 -51587059 - FLAM_A SINE Alu -2 131 1 426 291 159 0 chr1 191077621 191077772 -51586581 - MER5A DNA MER1_type -1 188 14 217 254 90 0 chr1 191081634 191081701 -51582652 - L2 LINE L2 -6 3307 3235 235 222 0 0 chr1 191083635 191083680 -51580673 + L2 LINE L2 2716 2760 -554 185 298 18 0 chr1 191084680 191084737 -51579616 + L2 LINE L2 3256 3313 0 1189 219 137 22 chr1 191085065 191085430 -51578923 + MLT1D LTR MaLR 97 503 -2 4931 185 36 33 chr1 191085435 191086872 -51577481 + L1M3 LINE L1 4208 5646 -688 2064 147 37 0 chr1 191086872 191087220 -51577133 - MER46B DNA MER2_type 0 236 1 4931 185 36 33 chr1 191087220 191087280 -51577073 + L1M3 LINE L1 5646 5704 -630 2114 214 29 0 chr1 191087972 191088387 -51575966 - MER44D DNA MER2_type -1 604 123 * 12577 138 11 9 chr1 191088385 191090383 -51573970 - Tigger1 DNA MER2_type -416 2002 1 2107 138 3 32 chr1 191090674 191091052 -51573301 - L1PB1 LINE L1 -3 6864 6498 14352 195 26 15 chr1 191091101 191091586 -51572767 - L1PB1 LINE L1 -362 6505 6027 2340 86 0 3 chr1 191091586 191091888 -51572465 - AluY SINE Alu -10 301 1 14352 195 26 15 chr1 191091888 191092793 -51571560 - L1PB1 LINE L1 -840 6027 5133 288 0 0 0 chr1 191092793 191092825 -51571528 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 14352 195 26 15 chr1 191092825 191096508 -51567845 - L1PB1 LINE L1 -1734 5133 1332 277 222 0 0 chr1 191096526 191096580 -51567773 - L1PB1 LINE L1 -5716 1147 1094 1596 165 100 24 chr1 191096582 191096951 -51567402 - L1PB1 LINE L1 -5815 1048 652 573 245 54 0 chr1 191096948 191097132 -51567221 - L1PB1 LINE L1 -6664 199 6 * 188 327 161 32 chr1 191098907 191099124 -51565229 + L3 LINE CR1 1173 1417 -160 2753 115 79 5 chr1 191099663 191100107 -51564246 + L1PA13 LINE L1 5685 6161 -2 588 338 87 46 chr1 191100361 191100858 -51563495 - L2 LINE L2 -646 2668 2152 317 303 152 6 chr1 191101503 191101681 -51562672 + L2 LINE L2 2703 2906 -408 2031 127 0 0 chr1 191101731 191102035 -51562318 - AluSx SINE Alu 0 304 1 356 345 118 42 chr1 191102069 191102356 -51561997 + L2 LINE L2 3005 3313 0 238 259 0 0 chr1 191102364 191102418 -51561935 + (TGAA)n Simple_repeat Simple_repeat 2 55 0 27 49 0 0 chr1 191103098 191103139 -51561214 + AT_rich Low_complexity Low_complexity 1 41 0 3851 218 52 22 chr1 191103262 191104313 -51560040 + Tigger6a DNA MER2_type 1 1083 0 609 279 110 88 chr1 191104918 191105409 -51558944 - LTR33 LTR ERVL -6 515 14 2083 114 3 0 chr1 191106092 191106381 -51557972 + AluSq SINE Alu 1 290 -23 364 330 107 10 chr1 191106769 191107060 -51557293 + HERVL LTR ERVL 936 1254 -4400 1466 331 53 44 chr1 191107355 191107726 -51556627 + HERVL LTR ERVL 1666 2032 -3732 2029 60 40 63 chr1 191107726 191108027 -51556326 - AluY SINE Alu -12 299 6 1466 331 53 44 chr1 191108027 191108522 -51555831 + HERVL LTR ERVL 2032 2540 -3224 413 307 60 31 chr1 191108785 191109137 -51555216 - L1ME LINE L1 -4981 1224 863 494 321 91 67 chr1 191109138 191109646 -51554707 - L1ME LINE L1 -5546 850 331 23 33 0 0 chr1 191109999 191110029 -51554324 + AT_rich Low_complexity Low_complexity 1 30 0 1549 170 3 35 chr1 191110072 191110360 -51553993 - AluJb SINE Alu -12 300 22 22 0 0 0 chr1 191110820 191110842 -51553511 + AT_rich Low_complexity Low_complexity 1 22 0 248 252 112 49 chr1 191110946 191111089 -51553264 + L2 LINE L2 3162 3313 0 369 0 0 0 chr1 191111479 191111520 -51552833 + (TG)n Simple_repeat Simple_repeat 1 41 0 27 96 0 0 chr1 191111993 191112076 -51552277 + AT_rich Low_complexity Low_complexity 1 83 0 476 300 23 0 chr1 191113020 191113150 -51551203 + L2 LINE L2 3181 3313 0 182 338 0 15 chr1 191113351 191113419 -51550934 + MIR SINE MIR 86 152 -110 2200 74 10 10 chr1 191114022 191114321 -51550032 - AluSc SINE Alu -10 299 1 185 282 61 110 chr1 191114910 191115073 -51549280 + MIR3 SINE MIR 34 187 -21 345 248 110 18 chr1 191115184 191115293 -51549060 - MIR SINE MIR -46 216 98 264 388 25 6 chr1 191115473 191115633 -51548720 + MIR SINE MIR 96 258 -4 702 321 81 30 chr1 191116040 191116536 -51547817 - Charlie7 DNA MER1_type -2009 603 83 864 347 116 15 chr1 191116893 191117437 -51546916 - L2 LINE L2 -359 2955 2357 305 292 113 70 chr1 191117489 191117790 -51546563 - L2 LINE L2 -849 2465 2152 1683 180 72 14 chr1 191117970 191118315 -51546038 - MER47A DNA MER2_type 0 366 2 2621 99 0 24 chr1 191119736 191120119 -51544234 - THE1C LTR MaLR -1 374 1 259 254 16 0 chr1 191120168 191120231 -51544122 + L2 LINE L2 3209 3272 0 247 261 46 0 chr1 191120459 191120524 -51543829 + MIR SINE MIR 124 191 -71 21 0 0 0 chr1 191121843 191121864 -51542489 + AT_rich Low_complexity Low_complexity 1 21 0 182 355 32 0 chr1 191123632 191123694 -51540659 - L3 LINE CR1 -122 1455 1392 28 61 0 0 chr1 191125144 191125193 -51539160 + AT_rich Low_complexity Low_complexity 1 49 0 390 21 0 0 chr1 191125440 191125487 -51538866 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 368 23 53 chr1 191126043 191126214 -51538139 + MIR3 SINE MIR 2 167 -41 2788 13 0 0 chr1 191126218 191126527 -51537826 - AluYb8 SINE Alu -9 309 1 200 313 117 75 chr1 191126602 191126842 -51537511 + L2 LINE L2 3042 3291 -22 610 153 49 0 chr1 191126980 191127143 -51537210 + (TA)n Simple_repeat Simple_repeat 2 172 0 183 229 0 0 chr1 191127702 191127737 -51536616 - MIR SINE MIR -129 79 45 181 316 0 38 chr1 191128280 191128359 -51535994 + L2 LINE L2 1358 1433 -1881 270 0 0 0 chr1 191129302 191129332 -51535021 + (TG)n Simple_repeat Simple_repeat 1 30 0 544 289 117 5 chr1 191129714 191129911 -51534442 - MIR SINE MIR 0 262 44 654 62 0 41 chr1 191130035 191130171 -51534182 - L1PA2 LINE L1 0 6155 6061 378 219 40 126 chr1 191130398 191130549 -51533804 + MIR SINE MIR 35 172 -90 404 329 19 0 chr1 191130831 191130992 -51533361 + MIR SINE MIR 44 207 -55 22 0 0 0 chr1 191132136 191132158 -51532195 + AT_rich Low_complexity Low_complexity 1 22 0 213 277 0 0 chr1 191132386 191132433 -51531920 + GA-rich Low_complexity Low_complexity 5 51 0 1255 71 0 76 chr1 191135336 191135402 -51528951 + L1PB1 LINE L1 5970 6039 -112 2253 90 0 19 chr1 191135402 191135714 -51528639 + AluSg SINE Alu 1 306 -4 1255 71 0 76 chr1 191135714 191135844 -51528509 + L1PB1 LINE L1 6039 6151 0 235 391 74 22 chr1 191135962 191136192 -51528161 - L2 LINE L2 -493 2821 2580 853 281 77 57 chr1 191136601 191137248 -51527105 - HAL1 LINE L1 -298 2209 1550 230 308 54 8 chr1 191137262 191137392 -51526961 - HAL1 LINE L1 -1034 1473 1338 232 342 26 0 chr1 191137394 191137470 -51526883 - L2 LINE L2 -1 3312 3235 424 217 17 100 chr1 191137832 191138012 -51526341 + LTR41 LTR ERVL 599 763 -10 21 71 0 0 chr1 191138027 191138069 -51526284 + AT_rich Low_complexity Low_complexity 1 42 0 674 216 25 109 chr1 191140331 191140350 -51524003 - MIR SINE MIR 0 262 243 2064 129 30 0 chr1 191140350 191140653 -51523700 + AluSx SINE Alu 1 312 0 674 216 25 109 chr1 191140653 191140892 -51523461 - MIR SINE MIR -19 243 26 516 32 0 0 chr1 191141189 191141251 -51523102 + (CA)n Simple_repeat Simple_repeat 2 63 0 23 0 0 0 chr1 191143213 191143236 -51521117 + AT_rich Low_complexity Low_complexity 1 23 0 344 376 16 0 chr1 191143307 191143432 -51520921 + L2 LINE L2 3181 3307 -6 190 289 44 83 chr1 191143791 191143971 -51520382 + L2 LINE L2 1452 1624 -1690 232 375 90 44 chr1 191144876 191145311 -51519042 + L2 LINE L2 2028 2482 -832 1724 259 73 43 chr1 191146117 191146692 -51517661 + MLT1E LTR MaLR 1 592 -1 23 54 0 0 chr1 191147262 191147299 -51517054 + AT_rich Low_complexity Low_complexity 1 37 0 490 303 52 56 chr1 191148630 191149173 -51515180 + L2 LINE L2 2650 3183 -130 430 314 72 10 chr1 191149293 191149487 -51514866 + MIR SINE MIR 54 259 -3 219 220 0 0 chr1 191149494 191149544 -51514809 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 213 307 89 0 chr1 191150939 191151040 -51513313 - L2 LINE L2 0 3313 3204 583 320 126 0 chr1 191151222 191151453 -51512900 + MIR SINE MIR 3 262 0 453 359 6 0 chr1 191152098 191152254 -51512099 - MIR3 SINE MIR -18 190 34 46 54 0 0 chr1 191152589 191152663 -51511690 + AT_rich Low_complexity Low_complexity 1 74 0 9203 18 0 0 chr1 191153529 191154592 -51509761 - L1HS LINE L1 -1130 5016 3954 7920 13 0 0 chr1 191154586 191155737 -51508616 + L1HS LINE L1 5004 6154 -1 * 303 279 57 36 chr1 191155927 191156067 -51508286 - L1 LINE L1 -3733 2413 2271 840 224 6 6 chr1 191156544 191156705 -51507648 - FRAM SINE Alu -16 160 1 2368 87 0 3 chr1 191156714 191157014 -51507339 - AluSc SINE Alu -10 299 1 231 289 24 12 chr1 191157068 191157151 -51507202 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 277 292 54 18 chr1 191157544 191157712 -51506641 - HAL1 LINE L1 -1187 1320 1147 1529 145 57 0 chr1 191158681 191158943 -51505410 + MSTA LTR MaLR 152 428 0 2143 322 47 6 chr1 191158943 191159748 -51504605 - HERV16 LTR ERVL -2503 2493 1656 438 79 0 0 chr1 191160210 191160273 -51504080 + (TG)n Simple_repeat Simple_repeat 1 63 0 549 340 101 8 chr1 191160452 191160699 -51503654 + L3 LINE CR1 423 692 -885 2355 107 11 8 chr1 191160744 191161098 -51503255 - THE1A LTR MaLR 0 355 1 11733 91 4 1 chr1 191161098 191162673 -51501680 - THE1A-int LTR MaLR 0 1580 1 2256 124 8 8 chr1 191162673 191163028 -51501325 - THE1A LTR MaLR 0 355 1 418 303 23 8 chr1 191163098 191163230 -51501123 - MIR3 SINE MIR -43 165 32 494 311 124 58 chr1 191163349 191163728 -51500625 + L3 LINE CR1 814 1217 -360 31 68 0 0 chr1 191164177 191164236 -51500117 + AT_rich Low_complexity Low_complexity 1 59 0 34 0 0 0 chr1 191164709 191164743 -51499610 + AT_rich Low_complexity Low_complexity 1 34 0 354 228 148 0 chr1 191165802 191165903 -51498450 + L2 LINE L2 3180 3295 -18 192 40 0 0 chr1 191167030 191167055 -51497298 + (TC)n Simple_repeat Simple_repeat 2 26 0 1592 187 7 11 chr1 191167063 191167346 -51497007 - AluJo SINE Alu -30 282 1 26 0 0 0 chr1 191167552 191167578 -51496775 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr1 191167874 191167911 -51496442 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr1 191169273 191169303 -51495050 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 191172328 191172357 -51491996 + AT_rich Low_complexity Low_complexity 1 29 0 287 337 123 12 chr1 191172416 191172579 -51491774 - MIR SINE MIR -71 191 11 283 287 32 21 chr1 191173910 191174004 -51490349 - MIR3 SINE MIR 0 208 114 188 111 28 0 chr1 191175035 191175071 -51489282 + (CA)n Simple_repeat Simple_repeat 2 38 0 936 356 39 18 chr1 191175858 191176425 -51487928 + L1PA16 LINE L1 788 1366 -6208 1986 228 48 16 chr1 191176915 191182079 -51482274 + L1PA16 LINE L1 2182 7574 -18 25 51 0 0 chr1 191182489 191182528 -51481825 + AT_rich Low_complexity Low_complexity 1 39 0 1832 147 23 3 chr1 191182661 191182960 -51481393 + AluSg1 SINE Alu 2 306 -3 930 201 0 0 chr1 191183196 191183350 -51481003 + FRAM SINE Alu 1 150 -26 26 30 0 0 chr1 191183350 191183383 -51480970 + AT_rich Low_complexity Low_complexity 1 33 0 1423 196 3 45 chr1 191183388 191183674 -51480679 + AluJo SINE Alu 7 280 -32 398 203 31 0 chr1 191185799 191185927 -51478426 + (TA)n Simple_repeat Simple_repeat 2 133 0 252 143 0 0 chr1 191186447 191186489 -51477864 + (TG)n Simple_repeat Simple_repeat 2 43 0 2790 19 0 0 chr1 191186602 191186913 -51477440 + AluY SINE Alu 1 311 0 210 327 0 0 chr1 191187071 191187123 -51477230 - L2 LINE L2 -15 3298 3247 214 306 59 71 chr1 191187123 191187208 -51477145 + L2 LINE L2 3189 3272 0 901 283 160 3 chr1 191187537 191187880 -51476473 - MLT1J2 LTR MaLR -53 397 1 24 67 0 0 chr1 191188187 191188232 -51476121 + AT_rich Low_complexity Low_complexity 1 45 0 216 97 0 0 chr1 191188435 191188466 -51475887 + (T)n Simple_repeat Simple_repeat 1 31 0 1366 122 5 0 chr1 191188675 191188888 -51475465 + L1PB1 LINE L1 5934 6147 -4 23 78 0 0 chr1 191189143 191189194 -51475159 + AT_rich Low_complexity Low_complexity 1 51 0 27 81 0 0 chr1 191189538 191189600 -51474753 + AT_rich Low_complexity Low_complexity 1 62 0 278 315 54 0 chr1 191190258 191190350 -51474003 + MIR SINE MIR 13 109 -153 5751 189 16 22 chr1 191190610 191192317 -51472036 + L1MC1 LINE L1 4642 6333 0 26 0 0 0 chr1 191192317 191192343 -51472010 + AT_rich Low_complexity Low_complexity 1 26 0 799 353 94 15 chr1 191192950 191193770 -51470583 - L2 LINE L2 -1 3312 2429 465 313 30 30 chr1 191193812 191194013 -51470340 + MER20B DNA MER1_type 3 203 -580 816 239 42 15 chr1 191194989 191195252 -51469101 + MER20B DNA MER1_type 514 783 0 809 325 55 3 chr1 191195252 191195636 -51468717 - L2 LINE L2 -1092 2222 1819 247 220 20 0 chr1 191195933 191195983 -51468370 + L2 LINE L2 3222 3272 0 24 32 0 0 chr1 191197192 191197223 -51467130 + AT_rich Low_complexity Low_complexity 1 31 0 192 97 0 0 chr1 191197413 191197444 -51466909 + (TC)n Simple_repeat Simple_repeat 2 32 0 331 256 33 74 chr1 191198021 191198142 -51466211 - MIR3 SINE MIR -18 190 75 236 350 27 38 chr1 191200463 191200649 -51463704 - L3 LINE CR1 -265 1312 1129 811 271 67 31 chr1 191201550 191201908 -51462445 + HAL1 LINE L1 8 378 -2129 * 1727 248 164 5 chr1 191201891 191202527 -51461826 + L1ME1 LINE L1 5426 6162 -4 1047 301 126 15 chr1 191202560 191203091 -51461262 + HAL1 LINE L1 362 951 -1556 2383 266 60 64 chr1 191203175 191204217 -51460136 + HAL1 LINE L1 1116 2152 -355 264 30 0 0 chr1 191204217 191204250 -51460103 + (TG)n Simple_repeat Simple_repeat 1 33 0 2383 266 60 64 chr1 191204250 191204605 -51459748 + HAL1 LINE L1 2152 2507 0 22 0 0 0 chr1 191204615 191204637 -51459716 + AT_rich Low_complexity Low_complexity 1 22 0 2227 68 82 23 chr1 191204650 191205017 -51459336 + MLT2A1 LTR ERVL 1 444 0 2010 201 75 65 chr1 191205767 191206384 -51457969 + MLT1E3 LTR MaLR 1 623 -1 300 53 0 0 chr1 191206461 191206499 -51457854 + (CCTAT)n Simple_repeat Simple_repeat 4 41 0 1035 261 118 65 chr1 191206723 191207417 -51456936 + L1ME LINE L1 1587 2317 -4079 2076 107 29 0 chr1 191207421 191207702 -51456651 + AluSc SINE Alu 1 289 -20 441 101 46 9 chr1 191207702 191207811 -51456542 + (TA)n Simple_repeat Simple_repeat 1 113 0 1773 239 146 6 chr1 191207832 191208509 -51455844 + L1ME LINE L1 2318 3089 -3126 472 249 81 25 chr1 191208543 191208740 -51455613 + L1ME LINE L1 5602 5809 -426 1540 227 123 30 chr1 191208767 191209261 -51455092 + L1ME1 LINE L1 5622 6161 -5 201 74 0 0 chr1 191209702 191209729 -51454624 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr1 191212971 191212993 -51451360 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 191213586 191213608 -51450745 + (T)n Simple_repeat Simple_repeat 1 22 0 405 0 0 0 chr1 191215852 191215897 -51448456 + (CA)n Simple_repeat Simple_repeat 2 46 0 240 119 51 17 chr1 191216014 191216073 -51448280 + GA-rich Low_complexity Low_complexity 3 63 0 1899 123 14 4 chr1 191216253 191216579 -51447774 - AluSc SINE Alu 0 329 1 23 54 0 0 chr1 191217207 191217244 -51447109 + AT_rich Low_complexity Low_complexity 1 37 0 667 194 42 28 chr1 191217915 191218059 -51446294 + MER20 DNA MER1_type 73 218 -1 277 174 14 29 chr1 191218345 191218414 -51445939 + L1MC5 LINE L1 7483 7550 -411 1059 175 14 38 chr1 191218415 191218626 -51445727 - AluJo SINE Alu -20 292 87 839 163 135 28 chr1 191218695 191218983 -51445370 + L1MC5 LINE L1 7586 7904 -57 1424 287 91 33 chr1 191218995 191220256 -51444097 + L1ME3A LINE L1 4820 6158 -12 340 318 79 51 chr1 191220940 191221154 -51443199 - MIR SINE MIR -7 255 36 264 231 0 0 chr1 191221277 191221329 -51443024 + LTR30 LTR ERV1 1 52 -670 1282 131 39 99 chr1 191221335 191221644 -51442709 + LTR12 LTR ERV1 55 277 -437 336 263 10 0 chr1 191221644 191221743 -51442610 + LTR30 LTR ERV1 544 643 -79 27763 118 22 22 chr1 191221779 191223473 -51440880 + HERV9 LTR ERV1 830 2522 -5877 2066 67 15 8 chr1 191223473 191223741 -51440612 - AluY SINE Alu -13 298 29 27763 118 22 22 chr1 191223741 191226875 -51437478 + HERV9 LTR ERV1 2522 4983 -3416 5264 104 31 0 chr1 191226873 191227620 -51436733 + HERV9 LTR ERV1 7626 8395 -4 * 226 269 0 0 chr1 191227624 191227676 -51436677 + LTR30 LTR ERV1 1 52 -670 748 134 60 30 chr1 191227676 191227810 -51436543 + LTR12 LTR ERV1 53 190 -524 1349 120 204 155 chr1 191227811 191228218 -51436135 + LTR12 LTR ERV1 60 486 -228 1381 253 54 16 chr1 191228257 191228453 -51435900 + MLT1D LTR MaLR 1 188 -317 2255 103 0 3 chr1 191228453 191228754 -51435599 + AluSg SINE Alu 6 305 -5 1381 253 54 16 chr1 191228754 191229000 -51435353 + MLT1D LTR MaLR 188 460 -45 3261 71 0 51 chr1 191229352 191229805 -51434548 + MLT2A1 LTR ERVL 1 430 -14 337 206 20 0 chr1 191229805 191229907 -51434446 + (TA)n Simple_repeat Simple_repeat 1 104 0 357 39 78 0 chr1 191229924 191229975 -51434378 + MLT2A1 LTR ERVL 390 444 0 417 287 144 6 chr1 191230431 191230605 -51433748 - MIR SINE MIR -34 228 31 419 251 109 50 chr1 191231195 191231522 -51432831 - LTR33A LTR ERVL -50 743 297 230 318 118 41 chr1 191231659 191231829 -51432524 - LTR50 LTR ERVL -595 200 18 2027 159 20 57 chr1 191232150 191232196 -51432157 - L1MB1 LINE L1 0 7128 7082 1944 158 7 3 chr1 191232196 191232500 -51431853 - AluSx SINE Alu -5 307 3 2027 159 20 57 chr1 191232500 191232912 -51431441 - L1MB1 LINE L1 -46 7082 6687 9141 218 61 4 chr1 191232938 191235371 -51428982 - L1MB1 LINE L1 -1300 5806 3236 5478 109 8 0 chr1 191235373 191236381 -51427972 - L1PA15 LINE L1 -2 6163 5159 5560 204 25 8 chr1 191236381 191237606 -51426747 + L1PA15 LINE L1 3902 5147 -999 2485 259 72 44 chr1 191237601 191239344 -51425009 - L1MB1 LINE L1 -3861 3245 1525 * 229 188 0 42 chr1 191239558 191239606 -51424747 - L1M3d LINE L1 -5306 825 780 238 307 68 11 chr1 191239709 191239797 -51424556 - L1M3d LINE L1 -5239 902 810 468 323 33 56 chr1 191240012 191240428 -51423925 - L1MB1 LINE L1 -5696 1341 60 497 293 46 53 chr1 191240660 191240923 -51423430 + MIR SINE MIR 2 262 0 22 35 0 0 chr1 191241277 191241306 -51423047 + AT_rich Low_complexity Low_complexity 1 29 0 270 324 73 7 chr1 191241504 191241640 -51422713 - MIR3 SINE MIR -12 196 52 21 0 0 0 chr1 191241892 191241913 -51422440 + AT_rich Low_complexity Low_complexity 1 21 0 199 379 78 26 chr1 191242063 191242179 -51422174 + L2 LINE L2 3128 3249 -23 608 300 30 30 chr1 191242203 191242433 -51421920 - MIR SINE MIR -13 249 20 204 127 42 42 chr1 191242669 191242740 -51421613 + (TAA)n Simple_repeat Simple_repeat 2 72 0 569 189 27 20 chr1 191242742 191242885 -51421468 - MLT1A1 LTR MaLR -132 258 74 238 293 35 35 chr1 191242912 191243028 -51421325 - MIR SINE MIR -64 198 83 910 280 116 43 chr1 191243104 191243450 -51420903 + MER77 LTR ERV1 231 601 -4 436 202 0 67 chr1 191243452 191243556 -51420797 - MLT1A1 LTR MaLR -277 97 1 4747 239 33 44 chr1 191244458 191244750 -51419603 + HERVL74 LTR ERVL 3897 4191 -1494 1713 149 4 29 chr1 191244750 191245025 -51419328 + AluSq SINE Alu 32 299 -14 2227 118 0 3 chr1 191245025 191245338 -51419015 + AluSx SINE Alu 1 312 0 4747 239 33 44 chr1 191245338 191246397 -51417956 + HERVL74 LTR ERVL 4189 5234 -451 963 248 5 5 chr1 191246395 191246605 -51417748 + HERVL74 LTR ERVL 5387 5596 -89 * 1954 198 11 76 chr1 191246645 191247119 -51417234 + MER74B LTR ERVL 41 483 -139 395 229 48 19 chr1 191247254 191247359 -51416994 - MER5B DNA MER1_type -68 110 3 204 328 41 49 chr1 191247565 191247687 -51416666 + MIR SINE MIR 66 186 -76 213 241 101 38 chr1 191248650 191248729 -51415624 - MIR SINE MIR -142 120 37 26 50 0 0 chr1 191248803 191248843 -51415510 + AT_rich Low_complexity Low_complexity 1 40 0 231 36 0 0 chr1 191249453 191249481 -51414872 + (T)n Simple_repeat Simple_repeat 1 28 0 26 30 0 0 chr1 191250140 191250173 -51414180 + AT_rich Low_complexity Low_complexity 1 33 0 189 267 186 23 chr1 191250789 191250875 -51413478 + L3b LINE CR1 1220 1319 -264 496 266 14 22 chr1 191251452 191251591 -51412762 + MIR3 SINE MIR 71 208 0 875 177 50 15 chr1 191251842 191252040 -51412313 - L1MC2 LINE L1 -2 6342 6138 498 307 215 0 chr1 191252073 191252278 -51412075 - MIR SINE MIR -13 249 1 257 126 126 0 chr1 191252388 191252475 -51411878 + (TTAAA)n Simple_repeat Simple_repeat 3 100 0 299 299 73 0 chr1 191252937 191253074 -51411279 - MER103 DNA DNA -18 148 2 1674 199 3 0 chr1 191253297 191253593 -51410760 + AluJo SINE Alu 1 297 -15 409 262 115 97 chr1 191253752 191254204 -51410149 - MLT1H LTR MaLR -36 513 1 24 0 0 0 chr1 191254290 191254314 -51410039 + AT_rich Low_complexity Low_complexity 1 24 0 624 333 67 13 chr1 191254440 191254842 -51409511 - LTR16A LTR ERVL -12 445 13 288 310 209 5 chr1 191254853 191255040 -51409313 + L3 LINE CR1 1348 1572 -5 1866 171 0 0 chr1 191255238 191255543 -51408810 + AluJo SINE Alu 6 310 -2 23 54 0 0 chr1 191256126 191256163 -51408190 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr1 191256245 191256297 -51408056 + AT_rich Low_complexity Low_complexity 1 52 0 216 0 0 0 chr1 191256517 191256541 -51407812 + (A)n Simple_repeat Simple_repeat 1 24 0 33 66 0 0 chr1 191257792 191257853 -51406500 + AT_rich Low_complexity Low_complexity 1 61 0 327 113 42 0 chr1 191258035 191258106 -51406247 + GA-rich Low_complexity Low_complexity 1 74 0 302 360 27 0 chr1 191258296 191258407 -51405946 + L2 LINE L2 2223 2336 -978 2165 114 10 0 chr1 191258689 191258997 -51405356 - AluSp SINE Alu 0 313 3 2124 107 0 3 chr1 191259604 191259895 -51404458 - AluSx SINE Alu -22 290 1 25 0 0 0 chr1 191259897 191259922 -51404431 + AT_rich Low_complexity Low_complexity 1 25 0 2216 91 3 47 chr1 191259931 191260249 -51404104 + AluSg SINE Alu 1 304 -6 355 333 65 7 chr1 191260942 191261080 -51403273 - MIR SINE MIR -92 170 25 379 331 83 18 chr1 191261270 191261439 -51402914 + MIR SINE MIR 58 237 -25 225 0 0 0 chr1 191262442 191262467 -51401886 + (T)n Simple_repeat Simple_repeat 1 25 0 24 77 0 0 chr1 191262686 191262738 -51401615 + AT_rich Low_complexity Low_complexity 1 52 0 302 223 54 102 chr1 191262934 191263100 -51401253 + L1ME4a LINE L1 5964 6121 0 239 366 104 5 chr1 191264131 191264333 -51400020 - MIR SINE MIR -10 252 31 221 325 56 32 chr1 191264354 191264480 -51399873 + MER5A DNA MER1_type 1 129 -60 193 377 25 25 chr1 191264386 191264545 -51399808 - MER5A DNA MER1_type -22 167 9 * 211 307 88 69 chr1 191264703 191264893 -51399460 + L3 LINE CR1 642 840 -737 1697 147 180 14 chr1 191264893 191265260 -51399093 - MSTA LTR MaLR 0 428 1 211 307 88 69 chr1 191265260 191265343 -51399010 + L3 LINE CR1 840 920 -657 730 308 84 22 chr1 191265424 191265827 -51398526 + L3 LINE CR1 968 1395 -182 227 297 119 10 chr1 191265919 191266020 -51398333 + L2 LINE L2 3202 3313 0 207 167 0 0 chr1 191267796 191267832 -51396521 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr1 191268486 191268507 -51395846 + (TGG)n Simple_repeat Simple_repeat 1 21 0 2304 109 0 0 chr1 191269037 191269349 -51395004 + AluSx SINE Alu 1 312 0 680 295 46 31 chr1 191269726 191270150 -51394203 - MLT1G-int LTR MaLR -807 564 16 241 45 23 23 chr1 191270157 191270201 -51394152 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 526 160 53 10 chr1 191270213 191270343 -51394010 - MLT1G LTR MaLR 0 590 423 520 292 54 11 chr1 191270417 191270602 -51393751 - MLT1G LTR MaLR -300 290 98 891 123 0 0 chr1 191270605 191270727 -51393626 + AluSq/x SINE Alu 13 134 -178 1280 81 0 86 chr1 191270750 191270948 -51393405 + AluSc SINE Alu 103 283 -26 403 286 19 0 chr1 191270949 191271054 -51393299 - MLT1G LTR MaLR -460 107 1 260 26 0 26 chr1 191271877 191271915 -51392438 + (TG)n Simple_repeat Simple_repeat 2 38 0 557 211 92 40 chr1 191272600 191272752 -51391601 + MLT1J1 LTR MaLR 1 160 -290 2111 107 14 0 chr1 191273594 191273914 -51390439 + AluSx SINE Alu 1 324 0 260 369 69 0 chr1 191274155 191274315 -51390038 + L1MEc LINE L1 112 282 -6114 1025 286 59 15 chr1 191274496 191274971 -51389382 + L1M4 LINE L1 3400 3895 -2251 1025 242 33 7 chr1 191274996 191275298 -51389055 + L1M4 LINE L1 4812 5121 -1025 2650 222 52 16 chr1 191275360 191276189 -51388164 + MER97a DNA MER1_type? 57 812 -82 256 237 17 0 chr1 191277730 191277789 -51386564 + MER112 DNA MER1_type 9 68 -192 459 339 112 40 chr1 191279684 191280059 -51384294 + HAL1 LINE L1 575 976 -1531 520 284 0 74 chr1 191280113 191280303 -51384050 - MER97b DNA MER1_type? -876 177 2 648 173 39 31 chr1 191280610 191280737 -51383616 + FLAM_C SINE Alu 3 130 -13 388 273 128 26 chr1 191280798 191281025 -51383328 + HAL1 LINE L1 2258 2507 0 23 0 0 0 chr1 191281163 191281186 -51383167 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr1 191281284 191281339 -51383014 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr1 191281373 191281397 -51382956 + AT_rich Low_complexity Low_complexity 1 24 0 282 56 0 0 chr1 191283297 191283333 -51381020 + (TG)n Simple_repeat Simple_repeat 1 36 0 335 178 40 10 chr1 191285737 191285838 -51378515 + GA-rich Low_complexity Low_complexity 6 109 0 748 196 0 0 chr1 191286632 191286765 -51377588 - FLAM_C SINE Alu 0 133 1 219 295 147 54 chr1 191288441 191288570 -51375783 + L2 LINE L2 3132 3272 0 1470 212 77 32 chr1 191288589 191288984 -51375369 + MLT2B1 LTR ERVL 3 414 0 25 0 0 0 chr1 191289490 191289515 -51374838 + AT_rich Low_complexity Low_complexity 1 25 0 979 150 44 6 chr1 191289814 191289994 -51374359 + L1MC1 LINE L1 6146 6332 -1 4130 139 26 122 chr1 191290836 191291808 -51372545 + L1MA5 LINE L1 5267 6144 -156 1415 3 25 0 chr1 191291908 191292224 -51372129 + (GGAA)n Simple_repeat Simple_repeat 1 324 0 29 0 0 0 chr1 191292495 191292524 -51371829 + AT_rich Low_complexity Low_complexity 1 29 0 216 284 55 64 chr1 191292774 191292883 -51371470 - L2 LINE L2 0 3313 3206 23 54 0 0 chr1 191293474 191293511 -51370842 + AT_rich Low_complexity Low_complexity 1 37 0 741 195 0 86 chr1 191293568 191293778 -51370575 - AluJo SINE Alu 0 312 121 483 321 115 68 chr1 191293780 191293827 -51370526 + L2 LINE L2 2486 2529 -743 318 26 0 0 chr1 191293827 191293866 -51370487 + (TG)n Simple_repeat Simple_repeat 2 40 0 483 321 115 68 chr1 191293866 191294550 -51369803 + L2 LINE L2 2529 3271 -1 369 293 24 54 chr1 191294872 191295062 -51369291 - MIR SINE MIR -62 146 14 329 365 7 22 chr1 191295537 191295674 -51368679 - L2 LINE L2 0 3272 3138 233 154 0 0 chr1 191295846 191295885 -51368468 + L2 LINE L2 3269 3307 -6 1994 132 4 0 chr1 191297253 191297572 -51366781 + AluSx SINE Alu 5 324 0 472 254 67 0 chr1 191298312 191298446 -51365907 - MIR SINE MIR 0 262 120 325 208 62 42 chr1 191300444 191300540 -51363813 - L2 LINE L2 0 3313 3216 276 154 0 0 chr1 191301373 191301425 -51362928 + CT-rich Low_complexity Low_complexity 1 52 0 1902 168 0 0 chr1 191301535 191301826 -51362527 + AluSx SINE Alu 3 293 -19 205 321 194 23 chr1 191301993 191302389 -51361964 - L2 LINE L2 -784 2530 2067 428 182 23 11 chr1 191303419 191303507 -51360846 + MLT1J1 LTR MaLR 71 159 -287 428 182 23 11 chr1 191304146 191304234 -51360119 + MLT1J1 LTR MaLR 71 159 -287 983 267 168 41 chr1 191304342 191304777 -51359576 - MLT1F1 LTR MaLR -2 565 76 1778 214 84 9 chr1 191305797 191306227 -51358126 + MLT1C LTR MaLR 6 467 0 190 286 16 0 chr1 191306292 191306418 -51357935 + (CCCCAG)n Simple_repeat Simple_repeat 4 131 0 3216 221 10 17 chr1 191306744 191307795 -51356558 + L1MB8 LINE L1 5034 6075 -103 349 166 80 26 chr1 191307800 191307890 -51356463 + L1MB8 LINE L1 6031 6131 -43 210 314 47 67 chr1 191309755 191310054 -51354299 + L2 LINE L2 2283 2575 -739 463 254 23 0 chr1 191310388 191310518 -51353835 - MLT1L LTR MaLR -9 606 474 228 111 0 0 chr1 191311404 191311440 -51352913 + (CA)n Simple_repeat Simple_repeat 2 37 0 717 215 6 31 chr1 191311442 191311605 -51352748 + MLT1A2 LTR MaLR 4 162 -212 243 250 0 0 chr1 191311610 191311694 -51352659 + CT-rich Low_complexity Low_complexity 1 84 0 917 191 64 0 chr1 191311736 191311909 -51352444 + MLT1A2 LTR MaLR 189 372 -2 474 65 0 0 chr1 191311912 191311974 -51352379 + (CA)n Simple_repeat Simple_repeat 2 63 0 2454 66 0 10 chr1 191312400 191312704 -51351649 + AluY SINE Alu 1 301 -10 215 372 11 11 chr1 191312763 191312857 -51351496 + MIR SINE MIR 23 116 -146 27 29 0 0 chr1 191314605 191314639 -51349714 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr1 191314957 191314987 -51349366 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr1 191315547 191315597 -51348756 + AT_rich Low_complexity Low_complexity 1 50 0 225 328 83 15 chr1 191316347 191316551 -51347802 - L1MC4 LINE L1 -206 7836 7619 297 0 0 0 chr1 191317493 191317526 -51346827 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 80 0 0 chr1 191318037 191318062 -51346291 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 259 212 59 47 chr1 191318171 191318256 -51346097 + L2 LINE L2 3187 3272 0 36 62 0 0 chr1 191318666 191318730 -51345623 + AT_rich Low_complexity Low_complexity 1 64 0 26 50 0 0 chr1 191318795 191318835 -51345518 + AT_rich Low_complexity Low_complexity 1 40 0 520 302 74 0 chr1 191319857 191320099 -51344254 + MIR SINE MIR 3 262 0 392 284 8 47 chr1 191322229 191322356 -51341997 + L2 LINE L2 3189 3310 -3 1536 187 14 35 chr1 191322369 191322701 -51341652 + AluJb SINE Alu 1 326 0 432 296 69 19 chr1 191323179 191323395 -51340958 + ERVL LTR ERVL 5154 5380 -384 566 236 9 135 chr1 191323570 191323848 -51340505 + HAL1 LINE L1 1427 1660 -847 1789 166 3 20 chr1 191323848 191324149 -51340204 + AluJb SINE Alu 1 296 -16 566 236 9 135 chr1 191324149 191324196 -51340157 + HAL1 LINE L1 1660 1711 -796 768 272 99 24 chr1 191324807 191325222 -51339131 + MLT1C LTR MaLR 22 467 0 348 330 79 5 chr1 191325275 191325490 -51338863 + L1MC3 LINE L1 3256 3486 -2660 2774 7 0 0 chr1 191325523 191325823 -51338530 - AluY SINE Alu -11 300 1 303 308 196 9 chr1 191326127 191326341 -51338012 + L1MC3 LINE L1 3916 4169 -1977 811 147 80 30 chr1 191326343 191326508 -51337845 + MSTA LTR MaLR 1 202 -224 447 108 0 0 chr1 191326508 191326573 -51337780 - MLT2A2 LTR ERVL 0 453 389 2352 106 50 0 chr1 191326574 191326932 -51337421 - L1PA11 LINE L1 -4 6170 5795 2022 109 13 16 chr1 191326932 191327245 -51337108 + L1PA11 LINE L1 5467 5778 -390 1765 246 52 44 chr1 191327245 191327749 -51336604 - MLT2B3 LTR ERVL -46 508 1 1407 135 22 0 chr1 191327750 191327972 -51336381 + MSTA LTR MaLR 202 428 0 388 310 107 38 chr1 191328193 191328726 -51335627 + L1MC3 LINE L1 4489 5058 -1088 338 287 89 67 chr1 191328778 191328914 -51335439 + L1MC3 LINE L1 5514 5646 -2162 542 117 0 0 chr1 191328914 191328991 -51335362 + MADE1 DNA Mariner 4 80 0 338 287 89 67 chr1 191328991 191329136 -51335217 + L1MC3 LINE L1 5646 5801 -2007 2616 205 36 34 chr1 191329165 191329834 -51334519 + L1MC3 LINE L1 7114 7783 -2 2058 109 0 18 chr1 191329900 191330219 -51334134 + AluSc SINE Alu 1 314 0 1737 83 16 16 chr1 191330412 191330654 -51333699 + THE1C LTR MaLR 1 242 -133 319 138 17 0 chr1 191330713 191330771 -51333582 - LTR50 LTR ERVL -25 770 712 340 226 16 0 chr1 191331074 191331136 -51333217 + MER94 DNA DNA 72 134 0 1386 130 4 82 chr1 191332055 191332265 -51332088 - L1PA16 LINE L1 -1 6165 5979 2108 110 7 10 chr1 191332265 191332564 -51331789 - AluSg SINE Alu -12 298 1 1386 130 4 82 chr1 191332564 191332623 -51331730 - L1PA16 LINE L1 -187 5979 5917 2291 56 3 63 chr1 191332916 191333235 -51331118 + AluY SINE Alu 1 300 -11 439 145 0 0 chr1 191334951 191335020 -51329333 + MER103 DNA DNA 35 103 -63 534 211 44 9 chr1 191336367 191336481 -51327872 - L2 LINE L2 -4 3309 3192 246 156 0 0 chr1 191337793 191337838 -51326515 + (TG)n Simple_repeat Simple_repeat 1 45 0 612 284 87 89 chr1 191338109 191338298 -51326055 - LTR16A LTR ERVL 0 450 262 14851 154 30 22 chr1 191338298 191338890 -51325463 - Tigger2 DNA MER2_type -1 2717 2131 2169 82 0 36 chr1 191338890 191339212 -51325141 + AluY SINE Alu 1 311 0 14851 154 30 22 chr1 191339212 191341314 -51323039 - Tigger2 DNA MER2_type -587 2131 1 612 284 87 89 chr1 191341314 191341575 -51322778 - LTR16A LTR ERVL -188 262 1 4626 66 12 2 chr1 191341684 191342287 -51322066 - L1PA7 LINE L1 -2 6152 5544 183 432 64 8 chr1 191342616 191342741 -51321612 - MIR3 SINE MIR -52 156 25 204 206 16 32 chr1 191343544 191343607 -51320746 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 380 274 68 8 chr1 191343627 191343744 -51320609 - MIR SINE MIR -109 153 30 331 136 11 11 chr1 191343935 191344023 -51320330 + (TA)n Simple_repeat Simple_repeat 2 89 0 369 0 0 0 chr1 191344023 191344064 -51320289 + (GA)n Simple_repeat Simple_repeat 2 42 0 2074 116 4 0 chr1 191344065 191344341 -51320012 - AluSx SINE Alu -35 277 1 208 336 46 69 chr1 191344783 191345000 -51319353 - L2 LINE L2 -464 2850 2639 19695 196 27 9 chr1 191345242 191349563 -51314790 - L1PA13 LINE L1 -803 5994 1489 682 91 109 9 chr1 191349563 191349673 -51314680 - L1PB1 LINE L1 -1 6150 6030 19695 196 27 9 chr1 191349673 191351184 -51313169 - L1PA13 LINE L1 -5308 1489 7 7990 145 14 246 chr1 191351178 191354267 -51310086 - L1M2 LINE L1 -4655 2513 1 * 421 334 61 12 chr1 191355411 191355434 -51308919 - MIR SINE MIR -15 247 227 1511 176 94 24 chr1 191355434 191355775 -51308578 - MLT1A1 LTR MaLR 0 365 1 421 334 61 12 chr1 191355775 191355985 -51308368 - MIR SINE MIR -35 227 3 341 269 163 21 chr1 191356282 191356423 -51307930 - MIR3 SINE MIR -2 206 46 332 260 110 8 chr1 191356731 191356858 -51307495 - MER117 DNA MER1_type -47 150 11 186 208 0 0 chr1 191360295 191360348 -51304005 + A-rich Low_complexity Low_complexity 1 53 0 517 138 9 9 chr1 191361330 191361439 -51302914 + (TA)n Simple_repeat Simple_repeat 1 109 0 211 172 17 17 chr1 191362074 191362132 -51302221 + A-rich Low_complexity Low_complexity 2 59 0 678 188 12 56 chr1 191362156 191362316 -51302037 - MLT1F1 LTR MaLR -8 559 407 485 309 133 24 chr1 191362392 191362703 -51301650 - MLT1G1 LTR MaLR -286 304 1 1007 271 92 42 chr1 191363339 191364241 -51300112 + L1MCa LINE L1 1190 2334 -4273 276 251 145 57 chr1 191364310 191364593 -51299760 + L1MCa LINE L1 2919 3226 -3200 800 236 20 15 chr1 191364595 191364790 -51299563 - MLT1D LTR MaLR -309 196 1 1210 257 88 32 chr1 191364790 191365169 -51299184 + L1M4 LINE L1 4602 5021 -1125 600 262 161 62 chr1 191365169 191365585 -51298768 - LTR16A1 LTR ERVL 0 457 1 1210 257 88 32 chr1 191365585 191365742 -51298611 + L1M4 LINE L1 5021 5168 -978 275 259 59 0 chr1 191365900 191365985 -51298368 + MIR SINE MIR 167 256 -6 674 314 78 78 chr1 191366428 191366916 -51297437 - L2 LINE L2 -1 3312 2825 503 332 199 12 chr1 191366941 191367348 -51297005 - L2 LINE L2 -2104 1210 728 510 337 32 32 chr1 191367906 191368283 -51296070 - HAL1b LINE L1 -706 642 266 22 0 0 0 chr1 191368284 191368306 -51296047 + AT_rich Low_complexity Low_complexity 1 22 0 4072 181 44 37 chr1 191368350 191368858 -51295495 - L1MB4 LINE L1 -2 6178 5675 1565 152 43 14 chr1 191368858 191369134 -51295219 - AluJo SINE Alu 0 312 29 4072 181 44 37 chr1 191369134 191370300 -51294053 - L1MB4 LINE L1 -505 5675 4489 222 274 0 0 chr1 191371779 191371841 -51292512 + (TATG)n Simple_repeat Simple_repeat 3 64 0 189 366 42 0 chr1 191372587 191372658 -51291695 + MIR SINE MIR 30 103 -105 38 39 0 0 chr1 191373308 191373360 -51290993 + AT_rich Low_complexity Low_complexity 1 52 0 401 200 34 6 chr1 191374327 191374433 -51289920 + AluJb SINE Alu 22 108 -194 691 147 17 0 chr1 191376369 191376485 -51287868 + AluJb SINE Alu 1 118 -194 180 0 0 0 chr1 191376486 191376506 -51287847 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 21 71 0 0 chr1 191378339 191378381 -51285972 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr1 191380176 191380216 -51284137 + AT_rich Low_complexity Low_complexity 1 40 0 3928 195 43 12 chr1 191380972 191381828 -51282525 + L1MA9 LINE L1 5392 6274 -38 39 0 0 0 chr1 191381828 191381867 -51282486 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr1 191382321 191382357 -51281996 + AT_rich Low_complexity Low_complexity 1 36 0 622 294 25 10 chr1 191382368 191382572 -51281781 + HAL1b LINE L1 249 455 -893 281 57 43 57 chr1 191382717 191382787 -51281566 + (TATAA)n Simple_repeat Simple_repeat 2 70 0 595 335 29 12 chr1 191383279 191383524 -51280829 - MIR SINE MIR 0 262 14 201 370 60 0 chr1 191383898 191383998 -51280355 + L2 LINE L2 1522 1627 -1687 342 107 0 0 chr1 191384094 191384150 -51280203 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 225 0 0 0 chr1 191384170 191384195 -51280158 + (TC)n Simple_repeat Simple_repeat 2 26 0 1239 194 0 5 chr1 191384215 191384431 -51279922 - AluJo SINE Alu -27 285 71 239 147 0 0 chr1 191384433 191384467 -51279886 - Alu SINE Alu -200 102 69 182 276 108 103 chr1 191384473 191384658 -51279695 + L2 LINE L2 1758 1943 -1371 14118 201 27 19 chr1 191384714 191388545 -51275808 - L1PB2 LINE L1 -1 6866 3028 2342 90 53 28 chr1 191388545 191388900 -51275453 + THE1B LTR MaLR 1 364 0 14118 201 27 19 chr1 191388900 191390352 -51274001 - L1PB2 LINE L1 -3839 3028 1588 448 363 160 11 chr1 191390354 191390635 -51273718 + L2 LINE L2 2266 2588 -726 25 31 0 0 chr1 191390747 191390779 -51273574 + AT_rich Low_complexity Low_complexity 1 32 0 215 222 22 0 chr1 191391192 191391237 -51273116 - MIR SINE MIR -216 46 1 645 268 182 35 chr1 191391404 191391751 -51272602 - MLT1I LTR MaLR -1 408 11 450 180 3 0 chr1 191391751 191391835 -51272518 + MLT1E LTR MaLR 396 532 -61 2056 176 31 64 chr1 191392891 191393374 -51270979 + MLT1C LTR MaLR 1 467 0 484 215 68 31 chr1 191394389 191394552 -51269801 + MIR SINE MIR 76 244 -18 697 229 51 85 chr1 191394807 191395043 -51269310 + MIR SINE MIR 12 239 -23 937 187 0 0 chr1 191395182 191395348 -51269005 + FRAM SINE Alu 1 166 0 738 316 112 28 chr1 191395673 191396100 -51268253 - L2 LINE L2 -6 3307 2845 594 263 115 5 chr1 191396232 191396441 -51267912 + MLT1J1 LTR MaLR 215 446 0 237 303 105 0 chr1 191396442 191396518 -51267835 - L2 LINE L2 -455 2859 2776 301 300 10 30 chr1 191396796 191396896 -51267457 + MIR SINE MIR 40 137 -125 25 51 0 0 chr1 191397010 191397049 -51267304 + AT_rich Low_complexity Low_complexity 1 39 0 227 398 0 20 chr1 191397786 191397884 -51266469 + MIR SINE MIR 42 137 -71 333 47 0 0 chr1 191397912 191397955 -51266398 + (CATA)n Simple_repeat Simple_repeat 2 44 0 549 309 98 8 chr1 191398029 191398265 -51266088 + MIR SINE MIR 3 259 -3 1853 241 90 37 chr1 191398927 191399496 -51264857 + MLT1E2 LTR MaLR 1 599 -27 798 201 184 124 chr1 191399502 191399904 -51264449 - MLT1E LTR MaLR -167 426 1 894 236 38 113 chr1 191399904 191400348 -51264005 - MLT1E-int LTR MaLR 0 1371 961 381 141 0 0 chr1 191400478 191400549 -51263804 + (TC)n Simple_repeat Simple_repeat 2 72 0 338 308 15 15 chr1 191400551 191400681 -51263672 - MLT1E-int LTR MaLR -497 874 745 2101 138 0 25 chr1 191400706 191401025 -51263328 + AluSx SINE Alu 2 312 0 1350 233 24 74 chr1 191401177 191401734 -51262619 - MLT1E-int LTR MaLR -709 662 16 2952 145 112 46 chr1 191401734 191402360 -51261993 + MER39 LTR ERV1 1 667 -40 1501 238 77 68 chr1 191402388 191402973 -51261380 - MLT1E LTR MaLR -3 590 1 250 264 35 35 chr1 191404211 191404298 -51260055 + L2 LINE L2 3223 3309 -4 617 296 161 5 chr1 191404931 191405154 -51259199 - MIR SINE MIR -4 258 1 2302 192 18 75 chr1 191406549 191407148 -51257205 - L1MA9 LINE L1 -990 5156 4592 * 3911 160 33 135 chr1 191407142 191407900 -51256453 + L1MA9 LINE L1 5156 5731 -581 2107 121 0 0 chr1 191407900 191408189 -51256164 - AluY SINE Alu -18 293 5 3911 160 33 135 chr1 191408189 191408712 -51255641 + L1MA9 LINE L1 5731 6306 -6 2553 88 11 37 chr1 191408745 191409119 -51255234 + THE1B LTR MaLR 1 364 0 1669 142 91 51 chr1 191409576 191409949 -51254404 + MLT1B LTR MaLR 1 388 -2 193 310 18 88 chr1 191410763 191410876 -51253477 - MER5A DNA MER1_type -84 105 1 2123 108 7 0 chr1 191411357 191411664 -51252689 + AluSg SINE Alu 1 309 0 24 67 0 0 chr1 191413049 191413094 -51251259 + AT_rich Low_complexity Low_complexity 1 45 0 1655 179 0 39 chr1 191413559 191413866 -51250487 + AluJb SINE Alu 6 300 -12 255 326 33 11 chr1 191414179 191414271 -51250082 - L2 LINE L2 0 3313 3220 6730 43 2 1 chr1 191418007 191418868 -51245485 + L1P LINE L1 2442 3303 -2843 2195 187 21 19 chr1 191418945 191419372 -51244981 - MSTA LTR MaLR 0 428 1 386 282 87 5 chr1 191420507 191420713 -51243640 - L1M4 LINE L1 -994 5152 4930 298 266 151 47 chr1 191421039 191421231 -51243122 - L2 LINE L2 0 3313 3102 21 36 0 0 chr1 191421909 191421937 -51242416 + AT_rich Low_complexity Low_complexity 1 28 0 270 264 43 71 chr1 191422376 191422516 -51241837 - MIR SINE MIR -45 217 82 330 181 32 3 chr1 191425641 191425753 -51238600 + MIR SINE MIR 111 262 0 21 0 0 0 chr1 191426265 191426286 -51238067 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 191427732 191427767 -51236586 + AT_rich Low_complexity Low_complexity 1 35 0 2174 67 0 54 chr1 191429417 191429751 -51234602 - AluY SINE Alu 0 318 1 217 250 59 15 chr1 191431100 191431168 -51233185 - L2 LINE L2 -2 3311 3241 28 0 0 0 chr1 191432240 191432268 -51232085 + AT_rich Low_complexity Low_complexity 1 28 0 561 268 210 26 chr1 191432367 191432748 -51231605 + LTR37B LTR ERV1 5 455 -13 734 304 185 38 chr1 191432760 191433371 -51230982 + L2 LINE L2 2405 3140 -173 258 56 0 0 chr1 191433371 191433407 -51230946 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 734 304 185 38 chr1 191433407 191433498 -51230855 + L2 LINE L2 3140 3216 -97 282 29 0 0 chr1 191435794 191435829 -51228524 + (TG)n Simple_repeat Simple_repeat 2 36 0 29 47 0 0 chr1 191436644 191436687 -51227666 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr1 191436811 191436831 -51227522 + (CA)n Simple_repeat Simple_repeat 2 21 0 190 225 25 0 chr1 191438161 191438241 -51226112 + (TA)n Simple_repeat Simple_repeat 2 83 0 938 172 304 0 chr1 191438267 191438471 -51225882 - AluJo SINE Alu -46 266 1 970 296 164 29 chr1 191438842 191439585 -51224768 - L2 LINE L2 0 3313 2459 352 261 131 79 chr1 191439590 191439919 -51224434 + HAL1 LINE L1 2156 2501 -6 25 51 0 0 chr1 191439936 191439975 -51224378 + AT_rich Low_complexity Low_complexity 1 39 0 378 0 0 0 chr1 191441668 191441710 -51222643 + (CA)n Simple_repeat Simple_repeat 2 43 0 190 293 49 24 chr1 191443356 191443438 -51220915 + MIR SINE MIR 100 183 -79 506 294 54 22 chr1 191443552 191443736 -51220617 + MIR SINE MIR 35 224 -38 185 139 0 70 chr1 191443718 191443761 -51220592 - L3b LINE CR1 -166 1417 1378 * 198 233 23 0 chr1 191444646 191444689 -51219664 + L2 LINE L2 3256 3299 -14 3978 127 16 11 chr1 191445753 191446385 -51217968 + MER41B LTR ERV1 1 635 0 386 197 28 0 chr1 191447319 191447390 -51216963 - MIR SINE MIR -169 93 21 725 250 155 5 chr1 191448361 191448561 -51215792 - MIR SINE MIR -3 259 30 1019 186 13 53 chr1 191448562 191448788 -51215565 - MER20 DNA MER1_type -2 217 1 640 194 133 33 chr1 191448800 191449011 -51215342 + MER106A DNA MER1_type 5 236 0 189 0 0 0 chr1 191449446 191449467 -51214886 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 193 253 84 53 chr1 191450453 191450548 -51213805 + MER5A DNA MER1_type 92 189 0 41 21 0 0 chr1 191451467 191451515 -51212838 + AT_rich Low_complexity Low_complexity 1 48 0 531 236 16 16 chr1 191453054 191453181 -51211172 - L2 LINE L2 -659 2655 2529 290 285 171 0 chr1 191453179 191453302 -51211051 + L2 LINE L2 2642 2785 -529 * 1608 166 45 10 chr1 191453312 191453471 -51210882 - AluJb SINE Alu -13 299 124 369 0 0 0 chr1 191453471 191453512 -51210841 + (TG)n Simple_repeat Simple_repeat 2 42 0 1608 166 45 10 chr1 191453512 191453641 -51210712 - AluJb SINE Alu -188 124 1 351 337 50 5 chr1 191453772 191454062 -51210291 + L2 LINE L2 2800 3152 -161 7953 143 19 2 chr1 191454073 191456290 -51208063 - L1PA13 LINE L1 -39 6124 3877 1548 207 9 9 chr1 191456290 191456607 -51207746 + L1PB4 LINE L1 5826 6154 -2 2128 104 24 3 chr1 191456854 191457142 -51207211 - AluSc SINE Alu -15 294 1 491 215 159 12 chr1 191457396 191457559 -51206794 + LTR41 LTR ERVL 1 187 -586 468 243 77 81 chr1 191457965 191458224 -51206129 + LTR41 LTR ERVL 510 767 -6 10967 218 54 26 chr1 191458252 191459036 -51205317 + L1MB2 LINE L1 2930 3691 -3899 2259 105 0 0 chr1 191459036 191459340 -51205013 + AluSc SINE Alu 1 304 -5 10967 218 54 26 chr1 191459340 191459844 -51204509 + L1MB2 LINE L1 3691 4180 -3410 1992 143 3 3 chr1 191459844 191460137 -51204216 - AluSx SINE Alu -19 293 1 10967 218 54 26 chr1 191460137 191461627 -51202726 + L1MB2 LINE L1 4180 5627 -1963 1569 189 17 20 chr1 191461627 191461929 -51202424 + AluJb SINE Alu 1 301 -11 10967 218 54 26 chr1 191461929 191463322 -51201031 + L1MB2 LINE L1 5627 7270 -320 399 21 0 0 chr1 191463322 191463370 -51200983 + (CA)n Simple_repeat Simple_repeat 2 49 0 10967 218 54 26 chr1 191463370 191463701 -51200652 + L1MB2 LINE L1 7270 7590 0 313 251 127 93 chr1 191463772 191464275 -51200078 - L1MEd LINE L1 -4869 1250 731 570 29 0 0 chr1 191464866 191464934 -51199419 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 224 228 211 0 chr1 191465037 191465094 -51199259 - MIR SINE MIR -73 135 67 203 242 32 0 chr1 191465329 191465391 -51198962 + (TA)n Simple_repeat Simple_repeat 2 65 0 269 330 34 0 chr1 191465398 191465486 -51198867 - MIR SINE MIR -4 258 168 2183 151 58 15 chr1 191465881 191466291 -51198062 - MSTA LTR MaLR 0 428 1 496 269 124 25 chr1 191466743 191466944 -51197409 - MIR SINE MIR -12 250 30 938 264 35 52 chr1 191467104 191467449 -51196904 - L2 LINE L2 -1 3312 2974 301 378 72 29 chr1 191467466 191467773 -51196580 + L3 LINE CR1 651 970 -607 225 0 0 0 chr1 191468430 191468455 -51195898 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1589 126 58 51 chr1 191468532 191468825 -51195528 + AluJo SINE Alu 9 303 -9 758 280 6 0 chr1 191469226 191469408 -51194945 + MIR SINE MIR 73 255 -7 21 36 0 0 chr1 191469420 191469448 -51194905 + AT_rich Low_complexity Low_complexity 1 28 0 204 143 0 0 chr1 191469481 191469523 -51194830 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 185 0 0 39 chr1 191469848 191469874 -51194479 + (TAA)n Simple_repeat Simple_repeat 2 26 0 570 305 67 16 chr1 191469886 191470071 -51194282 - MIR SINE MIR -26 236 46 1463 146 105 0 chr1 191471482 191471721 -51192632 - L1PA12 LINE L1 -5795 1786 1523 * 1806 89 0 0 chr1 191471718 191471965 -51192388 + L1PA12 LINE L1 1758 2004 -5577 1727 287 55 51 chr1 191471968 191472734 -51191619 + L1PA13 LINE L1 342 1110 -5677 5235 190 7 22 chr1 191472746 191474247 -51190106 + L1PA13 LINE L1 1397 2877 -3920 14701 180 17 2 chr1 191474249 191478054 -51186299 + L1PA13 LINE L1 3001 6810 -4 21 0 0 0 chr1 191478812 191478833 -51185520 + AT_rich Low_complexity Low_complexity 1 21 0 573 269 96 25 chr1 191479114 191479517 -51184836 - L1MEc LINE L1 -3698 2517 2120 1970 123 41 0 chr1 191479656 191479776 -51184577 + AluSx SINE Alu 1 115 -197 315 0 0 0 chr1 191479776 191479811 -51184542 + (CA)n Simple_repeat Simple_repeat 2 36 0 1970 123 41 0 chr1 191479811 191479982 -51184371 + AluSx SINE Alu 115 304 -8 488 271 62 52 chr1 191480059 191480461 -51183892 - L1MEc LINE L1 -4579 1817 1412 230 244 26 13 chr1 191480469 191480547 -51183806 + L1MEc LINE L1 1315 1393 -5003 488 321 86 14 chr1 191481592 191481801 -51182552 - MIR SINE MIR -1 261 38 288 388 31 12 chr1 191481841 191482001 -51182352 + L2 LINE L2 2612 2774 -540 725 295 25 16 chr1 191483105 191483349 -51181004 + MIR SINE MIR 2 247 -15 195 277 91 107 chr1 191483410 191483785 -51180568 - L2 LINE L2 -1198 2116 1748 7369 129 18 42 chr1 191483785 191484254 -51180099 + Tigger2 DNA MER2_type 298 777 -1941 2212 103 139 34 chr1 191484254 191484428 -51179925 + MSTA LTR MaLR 1 155 -273 2141 129 0 29 chr1 191484428 191484739 -51179614 + AluSx SINE Alu 2 303 -9 2212 103 139 34 chr1 191484739 191484951 -51179402 + MSTA LTR MaLR 155 428 0 7369 129 18 42 chr1 191484951 191485737 -51178616 + Tigger2 DNA MER2_type 777 1523 -1195 292 284 15 0 chr1 191485734 191485801 -51178552 + Tigger2 DNA MER2_type 2640 2707 -11 * 203 339 15 0 chr1 191486041 191486106 -51178247 - L2 LINE L2 -217 3055 2990 21 36 0 0 chr1 191487814 191487842 -51176511 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 191487974 191488000 -51176353 + AT_rich Low_complexity Low_complexity 1 26 0 1057 324 99 18 chr1 191490135 191490733 -51173620 + L2 LINE L2 2292 2937 -377 3282 46 2 2 chr1 191490760 191491172 -51173181 + L1PA8 LINE L1 5760 6171 -1 546 251 200 5 chr1 191491436 191491631 -51172722 + MIR SINE MIR 17 249 -13 213 308 47 75 chr1 191493088 191493195 -51171158 + L2 LINE L2 3168 3271 -1 1795 321 42 9 chr1 191493970 191494521 -51169832 - HERV16 LTR ERVL -1966 3030 2462 2243 272 170 22 chr1 191494521 191495596 -51168757 + L2 LINE L2 1437 2670 -644 402 221 0 0 chr1 191495596 191495673 -51168680 - AluJ/FRAM SINE Alu -8 294 218 296 271 53 43 chr1 191495676 191495864 -51168489 + L2 LINE L2 2698 2887 -427 228 219 0 41 chr1 191495890 191495963 -51168390 + L1MC4 LINE L1 6634 6703 -1339 437 176 49 0 chr1 191495975 191496117 -51168236 + (TA)n Simple_repeat Simple_repeat 1 149 0 200 40 0 0 chr1 191496117 191496142 -51168211 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr1 191496142 191496162 -51168191 + (TA)n Simple_repeat Simple_repeat 1 20 0 520 278 122 44 chr1 191496191 191496486 -51167867 + L2 LINE L2 2996 3313 0 331 290 140 15 chr1 191496812 191497147 -51167206 + L1M4 LINE L1 4930 5306 -840 2195 187 21 19 chr1 191498153 191498580 -51165773 + MSTA LTR MaLR 1 428 0 9848 45 0 2 chr1 191498657 191499913 -51164440 - L1PA4 LINE L1 -2843 3303 2050 * 17163 37 1 0 chr1 191499912 191502750 -51161603 + L1PA4 LINE L1 3316 6155 0 239 179 36 0 chr1 191502863 191502919 -51161434 + GA-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chr1 191503271 191503292 -51161061 + AT_rich Low_complexity Low_complexity 1 21 0 226 234 47 16 chr1 191503807 191503871 -51160482 + MLT1K LTR MaLR 523 588 0 291 238 36 48 chr1 191504479 191504563 -51159790 + MIR3 SINE MIR 126 208 0 278 191 0 0 chr1 191504964 191505011 -51159342 - Alu SINE Alu -6 296 250 1407 296 12 17 chr1 191505068 191505484 -51158869 + L1ME1 LINE L1 215 628 -5768 705 185 49 12 chr1 191505501 191505663 -51158690 + L1ME1 LINE L1 762 929 -5467 798 180 93 6 chr1 191505850 191506022 -51158331 - L1MD3 LINE L1 -41 7954 7768 1600 263 78 15 chr1 191506033 191506827 -51157526 + L1ME1 LINE L1 1026 1869 -4527 582 206 15 0 chr1 191506871 191507002 -51157351 + L1ME LINE L1 4867 4999 -1147 1444 200 6 3 chr1 191507433 191507720 -51156633 + L1ME LINE L1 5468 5753 -398 274 349 9 0 chr1 191507699 191507805 -51156548 - L1MEc LINE L1 -6120 276 170 * 38 89 0 0 chr1 191507807 191507908 -51156445 + AT_rich Low_complexity Low_complexity 1 101 0 1995 262 103 50 chr1 191507937 191508337 -51156016 + L1ME1 LINE L1 1976 2353 -3862 2149 117 25 22 chr1 191508337 191508705 -51155648 + THE1C LTR MaLR 3 371 -4 1995 262 103 50 chr1 191508705 191509425 -51154928 + L1ME1 LINE L1 2353 3183 -3032 2140 132 0 3 chr1 191509425 191509736 -51154617 + AluSq SINE Alu 1 310 -3 1995 262 103 50 chr1 191509736 191510295 -51154058 + L1ME1 LINE L1 3183 3711 -2504 5378 143 5 0 chr1 191510307 191511127 -51153226 + Tigger1 DNA MER2_type 1595 2418 0 3342 224 49 18 chr1 191511127 191512695 -51151658 + L1ME1 LINE L1 4583 6199 -36 1597 243 16 24 chr1 191512891 191513274 -51151079 - MER82 DNA MER2_type 0 653 274 21 57 0 0 chr1 191513443 191513478 -51150875 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 191513503 191513527 -51150826 + AT_rich Low_complexity Low_complexity 1 24 0 433 331 17 17 chr1 191513546 191513724 -51150629 - MIR SINE MIR -73 189 12 327 216 122 0 chr1 191514105 191514179 -51150174 - MER82 DNA MER2_type -23 630 548 1219 156 58 14 chr1 191515897 191516173 -51148180 - L1MB8 LINE L1 -1 6988 6701 531 83 0 0 chr1 191516178 191516250 -51148103 - Alu SINE Alu -16 295 224 4364 222 29 8 chr1 191516260 191517973 -51146380 - L1MB8 LINE L1 -304 6691 4940 4645 257 63 18 chr1 191517974 191519486 -51144867 - L1MB8 LINE L1 -2199 4758 3146 2030 122 14 10 chr1 191519486 191519782 -51144571 + AluSg SINE Alu 1 297 -13 4645 257 63 18 chr1 191519782 191520081 -51144272 - L1MB8 LINE L1 -3811 3146 2862 1142 274 78 16 chr1 191520084 191520405 -51143948 - L1MB8 LINE L1 -6509 350 10 1871 169 3 0 chr1 191520699 191520989 -51143364 + AluSx SINE Alu 1 291 -21 1093 263 134 63 chr1 191521431 191522027 -51142326 + L1MCa LINE L1 3 602 -5443 779 121 0 23 chr1 191523924 191524056 -51140297 + MER39 LTR ERV1 510 638 -69 180 254 16 48 chr1 191524106 191524169 -51140184 - MER5C DNA MER1_type -246 78 18 23 33 0 0 chr1 191524271 191524301 -51140052 + AT_rich Low_complexity Low_complexity 1 30 0 3020 96 7 0 chr1 191524952 191525379 -51138974 - L1PA13 LINE L1 0 6163 5734 30 0 0 0 chr1 191526032 191526062 -51138291 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr1 191526219 191526264 -51138089 + AT_rich Low_complexity Low_complexity 1 45 0 3681 254 63 15 chr1 191526559 191527178 -51137175 + L1MDa LINE L1 34 755 -5788 3064 88 49 0 chr1 191527178 191527610 -51136743 - MLT2A2 LTR ERVL 0 453 1 3681 254 63 15 chr1 191527610 191528051 -51136302 + L1MDa LINE L1 755 1173 -5370 519 226 49 55 chr1 191528046 191528210 -51136143 + L1MDa LINE L1 1481 1643 -4897 * 272 207 0 12 chr1 191528277 191528359 -51135994 + GA-rich Low_complexity Low_complexity 2 82 0 2051 217 92 38 chr1 191528366 191528879 -51135474 + L1MDa LINE L1 1635 2194 -4346 4327 118 12 6 chr1 191528879 191529563 -51134790 - L1MA3 LINE L1 0 6305 5618 2051 217 92 38 chr1 191529563 191529716 -51134637 + L1MDa LINE L1 2194 2337 -4203 22 0 0 0 chr1 191530224 191530246 -51134107 + AT_rich Low_complexity Low_complexity 1 22 0 250 342 18 36 chr1 191531205 191531316 -51133037 + L3 LINE CR1 768 876 -701 399 349 166 32 chr1 191531720 191532213 -51132140 + L3 LINE CR1 879 1437 -140 206 399 75 25 chr1 191533084 191533365 -51130988 - L2 LINE L2 -163 3109 2815 3024 111 50 44 chr1 191533950 191534214 -51130139 + MER4B LTR ERV1 1 262 -517 2181 89 3 10 chr1 191534214 191534506 -51129847 + AluY SINE Alu 1 290 -21 3024 111 50 44 chr1 191534506 191534838 -51129515 + MER4B LTR ERV1 262 779 0 309 26 0 0 chr1 191535071 191535109 -51129244 + (TG)n Simple_repeat Simple_repeat 1 38 0 1519 209 7 11 chr1 191535437 191535724 -51128629 + AluJo SINE Alu 1 286 -26 360 164 0 0 chr1 191535724 191535791 -51128562 + GA-rich Low_complexity Low_complexity 1 67 0 24 32 0 0 chr1 191535912 191535943 -51128410 + AT_rich Low_complexity Low_complexity 1 31 0 38 81 0 0 chr1 191536548 191536635 -51127718 + AT_rich Low_complexity Low_complexity 1 87 0 455 281 152 29 chr1 191537671 191537881 -51126472 - MIR SINE MIR -7 255 20 186 43 0 0 chr1 191538511 191538534 -51125819 + (T)n Simple_repeat Simple_repeat 1 23 0 596 298 98 49 chr1 191539152 191539437 -51124916 + MLT1K LTR MaLR 127 425 -163 333 269 41 71 chr1 191539460 191539657 -51124696 + MLT1K LTR MaLR 395 585 -3 194 88 0 29 chr1 191540226 191540260 -51124093 + (TC)n Simple_repeat Simple_repeat 2 34 0 363 60 0 0 chr1 191540272 191540322 -51124031 + (GA)n Simple_repeat Simple_repeat 1 50 0 764 319 65 10 chr1 191540630 191540940 -51123413 + MLT1I LTR MaLR 83 409 0 571 323 34 14 chr1 191541264 191541512 -51122841 + MIR SINE MIR 1 262 0 211 305 105 21 chr1 191541570 191541665 -51122688 + MER91C DNA MER1_type 24 126 -14 1700 232 20 0 chr1 191541905 191542263 -51122090 + MLT1A1 LTR MaLR 1 365 0 722 275 64 34 chr1 191542752 191542988 -51121365 + MIR SINE MIR 4 246 -16 314 283 275 7 chr1 191543041 191543179 -51121174 - MIR SINE MIR -2 260 86 342 175 0 0 chr1 191543448 191543528 -51120825 + (CA)n Simple_repeat Simple_repeat 2 81 0 471 51 0 0 chr1 191543924 191543983 -51120370 - Alu SINE Alu -13 299 241 542 288 92 0 chr1 191544122 191544306 -51120047 + MIR SINE MIR 52 252 -10 2253 102 0 3 chr1 191544335 191544638 -51119715 - AluSc SINE Alu -7 302 1 191 352 22 0 chr1 191545261 191545352 -51119001 + L2 LINE L2 2696 2788 -526 325 329 118 12 chr1 191546068 191546229 -51118124 + MIR SINE MIR 11 188 -74 239 54 27 0 chr1 191546288 191546325 -51118028 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 205 282 58 10 chr1 191546490 191546593 -51117760 + L2 LINE L2 1365 1472 -1842 3307 252 82 22 chr1 191546758 191548095 -51116258 + L1ME3 LINE L1 2361 3777 -2369 1199 220 61 61 chr1 191548112 191548501 -51115852 + MLT2B1 LTR ERVL 1 356 -58 345 174 0 0 chr1 191548529 191548598 -51115755 + (TG)n Simple_repeat Simple_repeat 2 70 0 239 127 0 73 chr1 191548599 191548654 -51115699 + MLT2B1 LTR ERVL 347 397 0 3351 254 57 34 chr1 191548654 191550030 -51114323 + L1ME3 LINE L1 3791 5197 -949 5342 201 2 19 chr1 191550048 191550666 -51113687 + L1PB4 LINE L1 10 608 -6241 2309 153 33 26 chr1 191550666 191551090 -51113263 + MSTA LTR MaLR 2 428 0 5342 201 2 19 chr1 191551090 191551439 -51112914 + L1PB4 LINE L1 608 961 -5888 5271 196 17 21 chr1 191551437 191552833 -51111520 + L1PB4 LINE L1 4784 6179 -680 * 180 0 0 0 chr1 191552852 191552872 -51111481 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6386 71 5 2 chr1 191552875 191553717 -51110636 - L1PA8 LINE L1 -13 6159 5316 4274 118 22 4 chr1 191553699 191554380 -51109973 - L1P3 LINE L1 -3368 3093 2401 * 695 115 10 0 chr1 191554380 191554476 -51109877 - L1P3 LINE L1 -6355 106 10 3458 191 18 1 chr1 191554485 191555154 -51109199 + L1PB4 LINE L1 6163 6842 -17 1441 284 34 18 chr1 191555317 191555884 -51108469 + L1ME3 LINE L1 5322 5897 -265 4299 274 58 70 chr1 191556176 191558381 -51105972 + L1PB4 LINE L1 360 2137 -4516 * 8801 198 31 20 chr1 191558375 191561478 -51102875 + L1PB4 LINE L1 3613 6741 -1 11388 214 46 24 chr1 191561570 191562032 -51102321 + L1MA9 LINE L1 2400 2851 -3697 2347 97 0 3 chr1 191562032 191562342 -51102011 + AluSc SINE Alu 1 309 0 11388 214 46 24 chr1 191562342 191565754 -51098599 + L1MA9 LINE L1 2851 6367 -181 1750 209 0 0 chr1 191565754 191566051 -51098302 + AluJb SINE Alu 1 297 -15 11388 214 46 24 chr1 191566051 191566207 -51098146 + L1MA9 LINE L1 6367 6518 -30 482 320 36 31 chr1 191566214 191566408 -51097945 - L2 LINE L2 -1389 1925 1731 2356 130 77 18 chr1 191566408 191566809 -51097544 - MER57B LTR ERV1 0 434 10 1493 203 85 0 chr1 191567293 191567609 -51096744 + MER2 DNA MER2_type 2 344 0 26 0 0 0 chr1 191568924 191568950 -51095403 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr1 191569097 191569132 -51095221 + (A)n Simple_repeat Simple_repeat 1 35 0 189 132 0 0 chr1 191569844 191569882 -51094471 + (TA)n Simple_repeat Simple_repeat 2 39 0 288 254 0 0 chr1 191570344 191570407 -51093946 - L2 LINE L2 0 3313 3251 188 382 76 23 chr1 191570531 191570662 -51093691 + L2 LINE L2 3113 3250 -22 690 313 116 12 chr1 191570810 191571139 -51093214 - L2 LINE L2 -1 3312 2950 1433 222 85 28 chr1 191571162 191571599 -51092754 + MLT1C LTR MaLR 6 467 0 293 375 77 6 chr1 191572608 191572776 -51091577 + MLT1K LTR MaLR 3 182 -406 228 396 27 20 chr1 191572832 191572981 -51091372 + L2 LINE L2 2935 3084 -188 330 303 33 33 chr1 191573015 191573137 -51091216 - L2 LINE L2 -18 3295 3174 8508 155 28 8 chr1 191573519 191576012 -51088341 + L1MA3 LINE L1 3749 6296 -9 268 235 15 15 chr1 191576170 191576238 -51088115 + GA-rich Low_complexity Low_complexity 5 72 0 26107 140 15 12 chr1 191576977 191583321 -51081032 - L1PA8A LINE L1 -3 6443 19 220 372 61 41 chr1 191583754 191583950 -51080403 - L2 LINE L2 -177 3095 2896 690 335 56 12 chr1 191583976 191584391 -51079962 - L2 LINE L2 -264 3008 2572 360 310 114 50 chr1 191584695 191584976 -51079377 - L2 LINE L2 -838 2476 2178 198 0 0 0 chr1 191585016 191585038 -51079315 + (TTG)n Simple_repeat Simple_repeat 2 23 0 228 255 0 0 chr1 191585269 191585320 -51079033 + L2 LINE L2 3254 3304 -9 241 214 0 0 chr1 191585884 191585926 -51078427 + L2 LINE L2 3262 3303 -10 986 160 6 40 chr1 191586192 191586367 -51077986 + MER20 DNA MER1_type 39 207 -12 2003 127 3 35 chr1 191586368 191586682 -51077671 + AluSq SINE Alu 1 304 -9 191 398 24 0 chr1 191587731 191587814 -51076539 + MIR SINE MIR 6 90 -172 2051 285 80 71 chr1 191591016 191592580 -51071773 - L2 LINE L2 -2 3311 1743 356 207 42 1 chr1 191592613 191592709 -51071644 - L1MD3 LINE L1 -8 7985 6249 261 289 217 0 chr1 191592874 191593026 -51071327 + L2 LINE L2 1389 1573 -1741 875 297 81 53 chr1 191593076 191593378 -51070975 - L2 LINE L2 -2743 571 249 2089 135 0 0 chr1 191593378 191593697 -51070656 + AluSx SINE Alu 1 319 0 875 297 81 53 chr1 191593697 191593865 -51070488 - L2 LINE L2 -3065 249 87 332 292 117 17 chr1 191594670 191594790 -51069563 + MIR3 SINE MIR 67 198 -10 679 198 0 0 chr1 191594943 191595064 -51069289 - FLAM_A SINE Alu -12 121 1 187 53 35 70 chr1 191595283 191595340 -51069013 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 183 186 42 8 chr1 191595315 191595433 -51068920 + (TA)n Simple_repeat Simple_repeat 2 123 0 * 1422 297 93 39 chr1 191595638 191596806 -51067547 + L1MEc LINE L1 37 1268 -5128 1107 249 54 6 chr1 191596786 191597119 -51067234 + L1MEc LINE L1 3357 3705 -2510 * 976 325 14 32 chr1 191597161 191597592 -51066761 + L1M3a LINE L1 1 423 -5532 2075 233 90 32 chr1 191598355 191599211 -51065142 + L1M3f LINE L1 535 1425 -4095 945 147 86 0 chr1 191599211 191599374 -51064979 - THE1C LTR MaLR 0 375 199 1806 175 52 17 chr1 191599507 191599856 -51064497 - THE1C LTR MaLR 0 375 15 * 2917 173 52 12 chr1 191599843 191600443 -51063910 - MER39 LTR ERV1 -42 665 1 183 80 0 0 chr1 191601132 191601157 -51063196 + (CA)n Simple_repeat Simple_repeat 2 26 0 303 28 0 0 chr1 191601282 191601318 -51063035 + (TG)n Simple_repeat Simple_repeat 2 37 0 301 228 0 79 chr1 191601318 191601411 -51062942 + L1MC4 LINE L1 6616 6702 -1340 297 194 81 0 chr1 191603512 191603574 -51060779 - MLT1A1 LTR MaLR -11 363 297 28 0 0 0 chr1 191603574 191603602 -51060751 + AT_rich Low_complexity Low_complexity 1 28 0 1605 187 20 3 chr1 191603611 191603910 -51060443 - MLT1A1 LTR MaLR -61 304 1 198 103 0 0 chr1 191603920 191603949 -51060404 + (A)n Simple_repeat Simple_repeat 1 29 0 1277 210 28 53 chr1 191604078 191604397 -51059956 - MLT1A1 LTR MaLR 0 365 55 5813 20 0 0 chr1 191604397 191605242 -51059111 - L1P1 LINE L1 -609 5546 4702 5604 3 0 0 chr1 191605235 191605858 -51058495 + L1HS LINE L1 5533 6155 0 * 234 81 0 0 chr1 191605859 191605896 -51058457 + (A)n Simple_repeat Simple_repeat 1 37 0 244 233 0 17 chr1 191605896 191605956 -51058397 - MLT1A1 LTR MaLR -369 59 1 401 308 57 104 chr1 191606053 191606371 -51057982 - L2 LINE L2 -5 3267 1815 182 325 100 44 chr1 191606322 191606380 -51057973 + L3b LINE CR1 1164 1217 -366 * 1994 133 51 6 chr1 191606380 191606712 -51057641 + MER7A DNA MER2_type 1 345 -1 182 325 100 44 chr1 191606712 191606813 -51057540 + L3b LINE CR1 1217 1332 -251 198 339 8 85 chr1 191607306 191607424 -51056929 - L3 LINE CR1 -1468 109 1 1528 214 94 31 chr1 191608812 191609300 -51055053 - MLT1D LTR MaLR 0 626 12 254 241 27 9 chr1 191609676 191609788 -51054565 + A-rich Low_complexity Low_complexity 6 119 0 26 50 0 0 chr1 191610524 191610564 -51053789 + AT_rich Low_complexity Low_complexity 1 40 0 200 59 29 0 chr1 191610845 191610879 -51053474 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1322 320 134 0 chr1 191611242 191611853 -51052500 + L2 LINE L2 2372 3057 -256 187 368 0 23 chr1 191612170 191612257 -51052096 + MIR SINE MIR 49 133 -75 384 22 0 0 chr1 191613227 191613272 -51051081 + (TC)n Simple_repeat Simple_repeat 2 46 0 * 826 26 5 82 chr1 191613271 191613466 -51050887 + (TA)n Simple_repeat Simple_repeat 1 180 0 800 32 21 65 chr1 191613498 191613684 -51050669 + (TA)n Simple_repeat Simple_repeat 1 178 0 248 127 18 0 chr1 191613714 191613769 -51050584 + (CA)n Simple_repeat Simple_repeat 2 57 0 651 325 107 25 chr1 191613984 191614301 -51050052 - L3 LINE CR1 -5 1572 1230 182 356 81 0 chr1 191614304 191614391 -51049962 - L2 LINE L2 -17 3255 3162 269 225 38 0 chr1 191614426 191614506 -51049847 - LTR33A LTR ERVL -25 498 416 298 316 0 0 chr1 191614903 191614982 -51049371 - LTR50 LTR ERVL -714 81 3 1792 294 118 65 chr1 191615339 191616560 -51047793 - HERVL LTR ERVL -384 5380 4095 273 327 61 38 chr1 191616575 191616838 -51047515 - HERVL LTR ERVL -4034 1620 1352 686 218 84 0 chr1 191617072 191617214 -51047139 + MER58A DNA MER1_type 1 154 0 198 242 0 0 chr1 191617230 191617296 -51047057 + (TA)n Simple_repeat Simple_repeat 2 67 0 255 333 0 0 chr1 191618094 191618172 -51046181 + MIR SINE MIR 173 250 -12 329 335 172 25 chr1 191618269 191618588 -51045765 - L3 LINE CR1 -364 1213 848 604 275 165 0 chr1 191618845 191619045 -51045308 - MIR SINE MIR -25 237 5 292 379 6 33 chr1 191619045 191619227 -51045126 + L2 LINE L2 2581 2757 -557 227 270 0 16 chr1 191619427 191619490 -51044863 + (CATA)n Simple_repeat Simple_repeat 4 65 0 201 440 55 0 chr1 191619646 191619737 -51044616 + L2 LINE L2 3127 3222 -50 48 43 0 0 chr1 191619773 191619842 -51044511 + AT_rich Low_complexity Low_complexity 1 69 0 190 293 61 12 chr1 191620008 191620090 -51044263 - L3 LINE CR1 -761 816 731 1227 299 39 63 chr1 191620869 191621686 -51042667 + L1MEc LINE L1 789 1583 -4813 1530 196 39 17 chr1 191621686 191622043 -51042310 - MLT1A1 LTR MaLR 0 365 1 1227 299 39 63 chr1 191622043 191622148 -51042205 + L1MEc LINE L1 1583 1689 -4707 888 224 159 50 chr1 191622213 191622265 -51042088 + L1ME2 LINE L1 5320 5365 -799 1521 194 4 4 chr1 191622265 191622544 -51041809 + AluJo SINE Alu 12 290 -22 888 224 159 50 chr1 191622544 191622830 -51041523 + L1ME2 LINE L1 5365 5695 -469 958 257 123 25 chr1 191622833 191623238 -51041115 + L1ME2 LINE L1 5710 6154 -10 331 342 80 11 chr1 191623275 191623462 -51040891 - L3 LINE CR1 -835 742 543 361 330 72 53 chr1 191623557 191623821 -51040532 + MLT1K LTR MaLR 84 352 -236 1406 199 60 50 chr1 191624791 191625172 -51039181 - MLT1B LTR MaLR -4 386 2 208 176 0 20 chr1 191625534 191625585 -51038768 + A-rich Low_complexity Low_complexity 3 52 0 3684 250 64 10 chr1 191625613 191626998 -51037355 + L1MC2 LINE L1 3 1452 -4901 2672 245 49 8 chr1 191627430 191628351 -51036002 + L1MC2 LINE L1 3203 4161 -2403 795 110 8 0 chr1 191628347 191628465 -51035888 - L1P3 LINE L1 -375 5779 5661 * 676 88 0 0 chr1 191628465 191628556 -51035797 + L1PA8 LINE L1 6005 6095 -77 * 14758 212 23 34 chr1 191628545 191629477 -51034876 + L1PB4 LINE L1 1320 2261 -4957 1421 203 0 50 chr1 191629477 191629799 -51034554 + AluJb SINE Alu 1 307 0 14758 212 23 34 chr1 191629799 191629979 -51034374 + L1PB4 LINE L1 2261 2441 -4777 2177 118 0 3 chr1 191629979 191630285 -51034068 + AluSg SINE Alu 1 305 -5 14758 212 23 34 chr1 191630285 191631149 -51033204 + L1PB4 LINE L1 2441 3313 -3905 2370 67 0 3 chr1 191631149 191631447 -51032906 + AluY SINE Alu 1 297 -14 14758 212 23 34 chr1 191631447 191632793 -51031560 + L1PB4 LINE L1 3313 4672 -2546 2005 116 3 35 chr1 191632793 191633104 -51031249 + AluSg1 SINE Alu 1 301 -8 14758 212 23 34 chr1 191633104 191633623 -51030730 + L1PB4 LINE L1 4672 5195 -2023 2300 110 0 0 chr1 191633623 191633924 -51030429 + AluSx SINE Alu 1 301 -11 14758 212 23 34 chr1 191633924 191635995 -51028358 + L1PB4 LINE L1 5195 7211 -7 5507 210 36 18 chr1 191636202 191638748 -51025605 + L1MC2 LINE L1 4147 6750 -12 440 306 66 66 chr1 191638814 191639017 -51025336 + HAL1b LINE L1 7 212 -1136 1480 155 16 96 chr1 191639017 191639339 -51025014 + AluJb SINE Alu 1 296 -16 440 306 66 66 chr1 191639339 191639439 -51024914 + HAL1b LINE L1 211 310 -1038 1792 234 41 32 chr1 191639440 191639932 -51024421 + MLT1D LTR MaLR 2 497 -8 1329 301 98 69 chr1 191640373 191641655 -51022698 + L1MC5 LINE L1 6649 7924 -37 180 319 109 50 chr1 191641657 191641776 -51022577 - L3 LINE CR1 -1386 191 66 198 167 0 0 chr1 191642506 191642542 -51021811 + T-rich Low_complexity Low_complexity 1 36 0 210 333 114 24 chr1 191643698 191643821 -51020532 - L2 LINE L2 -9 3304 3171 323 295 101 20 chr1 191646038 191646187 -51018166 - MIR SINE MIR -8 254 94 575 224 50 12 chr1 191647611 191647772 -51016581 + MER3 DNA MER1_type 1 167 -42 270 243 22 22 chr1 191648008 191648144 -51016209 + T-rich Low_complexity Low_complexity 6 141 0 491 294 107 40 chr1 191649325 191649363 -51014990 - MER46C DNA MER2_type -3 335 301 1521 195 26 13 chr1 191649363 191649666 -51014687 - AluJo SINE Alu -5 307 1 491 294 107 40 chr1 191649666 191649701 -51014652 - MER46C DNA MER2_type -37 301 270 1499 126 14 0 chr1 191649701 191649923 -51014430 + AluSq SINE Alu 1 225 -88 491 294 107 40 chr1 191649923 191650120 -51014233 - MER46C DNA MER2_type -68 270 46 3162 219 86 19 chr1 191650123 191651033 -51013320 + L1ME2 LINE L1 5198 6157 -7 296 175 48 32 chr1 191651037 191651100 -51013253 - MER46C DNA MER2_type -274 64 1 365 269 6 99 chr1 191652124 191652295 -51012058 + MIR SINE MIR 69 223 -39 286 216 258 0 chr1 191652320 191652417 -51011936 + MIR SINE MIR 92 213 -49 196 301 82 0 chr1 191652803 191652876 -51011477 + L2 LINE L2 3185 3263 -9 878 279 42 62 chr1 191652962 191653515 -51010838 + L1ME4a LINE L1 5575 6116 -5 297 309 86 13 chr1 191653599 191653751 -51010602 + MIR SINE MIR 60 222 -40 210 380 50 5 chr1 191654464 191654685 -51009668 + L2 LINE L2 2838 3068 -204 2890 270 168 32 chr1 191655011 191656639 -51007714 + L2 LINE L2 1414 3261 -52 283 353 88 6 chr1 191657498 191657668 -51006685 - MIR SINE MIR -75 187 4 679 318 28 32 chr1 191658266 191658395 -51005958 + MIR SINE MIR 3 132 -130 1706 86 4 0 chr1 191658395 191658627 -51005726 - L1PB1 LINE L1 -1 6150 5918 679 318 28 32 chr1 191658627 191658749 -51005604 + MIR SINE MIR 132 253 -9 300 236 63 0 chr1 191658751 191658833 -51005520 - MIR SINE MIR -45 163 76 239 346 52 37 chr1 191660358 191660494 -51003859 - L2 LINE L2 -236 3036 2899 1202 247 58 48 chr1 191661569 191662031 -51002322 + MLT1C LTR MaLR 1 467 0 2231 95 0 0 chr1 191662225 191662538 -51001815 + AluSx SINE Alu 1 313 0 257 391 58 0 chr1 191663586 191663724 -51000629 - MIR SINE MIR -48 214 69 1880 195 3 29 chr1 191663728 191664103 -51000250 - MLT1A1 LTR MaLR 0 365 1 2128 145 18 99 chr1 191664247 191664701 -50999652 + MSTB1 LTR MaLR 3 419 -13 238 294 245 0 chr1 191665257 191665359 -50998994 - L2 LINE L2 -38 3234 3108 353 382 16 24 chr1 191665370 191665624 -50998729 + L2 LINE L2 2414 2665 -649 247 267 200 6 chr1 191665715 191665880 -50998473 + MIR SINE MIR 52 248 -14 391 335 65 18 chr1 191666106 191666276 -50998077 + LTR16A LTR ERVL 130 307 -143 453 319 45 13 chr1 191666364 191666521 -50997832 + HERV16 LTR ERVL 35 196 -4800 511 191 105 86 chr1 191666595 191666805 -50997548 - MER58C DNA MER1_type -1 214 1 297 268 0 0 chr1 191666844 191666915 -50997438 - MLT1F LTR MaLR -471 71 1 572 240 25 116 chr1 191667246 191667521 -50996832 - L1ME1 LINE L1 -17 6543 6294 1818 137 39 60 chr1 191667529 191667864 -50996489 + THE1B LTR MaLR 37 364 0 5549 94 26 4 chr1 191667865 191668621 -50995732 + THE1B-int LTR MaLR 2 774 -806 366 106 61 15 chr1 191668622 191668688 -50995665 + THE1B LTR MaLR 296 364 0 1970 221 127 15 chr1 191668689 191669749 -50994604 - L1ME1 LINE L1 -263 6297 5114 425 270 119 50 chr1 191669821 191670240 -50994113 - L1ME1 LINE L1 -4525 2015 1568 1318 243 9 34 chr1 191670418 191670859 -50993494 + L1M4 LINE L1 3586 4015 -2131 14255 200 27 20 chr1 191671026 191672763 -50991590 + L1PA16 LINE L1 3 1726 -5143 3736 107 0 4 chr1 191672763 191673276 -50991077 - MER9 LTR ERVK 0 511 1 14255 200 27 20 chr1 191673276 191678592 -50985761 + L1PA16 LINE L1 1726 6869 0 462 18 0 0 chr1 191678758 191678813 -50985540 + (CA)n Simple_repeat Simple_repeat 1 55 0 2028 324 53 28 chr1 191679134 191680005 -50984348 + HERV16 LTR ERVL 2181 3073 -1923 2050 345 50 42 chr1 191680123 191682175 -50982178 + HERV16 LTR ERVL 3286 5335 -150 796 290 34 84 chr1 191682299 191682764 -50981589 + LTR16B LTR ERVL 1 442 -22 386 322 58 119 chr1 191682785 191683164 -50981189 + L2 LINE L2 2915 3270 -2 273 29 0 0 chr1 191683260 191683294 -50981059 + (CA)n Simple_repeat Simple_repeat 2 35 0 441 95 0 0 chr1 191684990 191685053 -50979300 + (TG)n Simple_repeat Simple_repeat 2 64 0 501 311 62 50 chr1 191687114 191687355 -50976998 + L2 LINE L2 2543 2786 -528 189 304 29 14 chr1 191687513 191687582 -50976771 + MIR SINE MIR 64 133 -75 599 213 65 88 chr1 191687775 191687991 -50976362 - MIR SINE MIR -15 247 37 2560 23 0 0 chr1 191688514 191688820 -50975533 + L1PA2 LINE L1 5703 6010 -145 1025 9 0 0 chr1 191688922 191689078 -50975275 + L1PA2 LINE L1 6030 6185 0 5577 197 12 6 chr1 191689101 191690311 -50974042 + L1MA3 LINE L1 2304 3520 -2626 5502 163 22 4 chr1 191690304 191691368 -50972985 + L1MA3 LINE L1 4316 5398 -748 * 1541 107 0 19 chr1 191691368 191691584 -50972769 + AluSq SINE Alu 1 212 -101 2365 81 0 0 chr1 191691587 191691885 -50972468 - AluY SINE Alu -13 298 1 299 116 159 14 chr1 191691887 191691956 -50972397 + AluSc SINE Alu 186 264 -35 3853 80 8 8 chr1 191691958 191692494 -50971859 + L1MA3 LINE L1 5400 5935 -370 2936 110 22 0 chr1 191692500 191692947 -50971406 + L1MA2 LINE L1 5848 6304 0 36 62 0 0 chr1 191693494 191693558 -50970795 + AT_rich Low_complexity Low_complexity 1 64 0 288 140 73 30 chr1 191694065 191694229 -50970124 + (TA)n Simple_repeat Simple_repeat 1 171 0 26 50 0 0 chr1 191694332 191694372 -50969981 + AT_rich Low_complexity Low_complexity 1 40 0 2212 109 78 8 chr1 191694387 191694773 -50969580 + L1MA6 LINE L1 5888 6300 0 344 269 63 11 chr1 191694871 191695046 -50969307 + L1MEd LINE L1 919 1102 -5017 355 325 58 24 chr1 191695098 191695513 -50968840 + L1MEd LINE L1 1193 1695 -1007 738 149 23 11 chr1 191695967 191696141 -50968212 + CT-rich Low_complexity Low_complexity 2 177 0 1409 77 21 0 chr1 191696411 191696605 -50967748 + L1MA1 LINE L1 6105 6302 0 309 225 0 0 chr1 191696617 191696688 -50967665 + MLT1H LTR MaLR 479 549 0 789 198 113 31 chr1 191696753 191697010 -50967343 + L1MC/D LINE L1 1219 1496 -4930 1073 112 0 6 chr1 191697010 191697028 -50967325 + (GGAA)n Simple_repeat Simple_repeat 1 185 0 1073 112 0 6 chr1 191697028 191697197 -50967156 + (GGAA)n Simple_repeat Simple_repeat 2 169 0 1791 112 52 8 chr1 191698106 191698374 -50965979 + AluSx SINE Alu 1 280 -32 345 24 0 0 chr1 191698374 191698416 -50965937 + (TAA)n Simple_repeat Simple_repeat 1 42 0 360 286 50 14 chr1 191698450 191698590 -50965763 + L1MC/D LINE L1 1487 1631 -4795 2051 114 7 4 chr1 191698606 191698886 -50965467 + AluSq SINE Alu 1 281 -32 2119 258 44 3 chr1 191698929 191700216 -50964137 + L1MC/D LINE L1 1729 3286 -3140 373 218 0 129 chr1 191700226 191700282 -50964071 + L1MC/D LINE L1 5871 5933 -2132 2212 110 0 3 chr1 191700282 191700582 -50963771 - AluSg SINE Alu -7 303 5 373 218 0 129 chr1 191700582 191700672 -50963681 + L1MC/D LINE L1 5933 5998 -2067 37 39 0 0 chr1 191700674 191700725 -50963628 + AT_rich Low_complexity Low_complexity 1 51 0 315 171 148 0 chr1 191700762 191700850 -50963503 + L1M4 LINE L1 4492 4592 -1554 * 612 286 127 31 chr1 191700842 191701997 -50962356 + L1ME LINE L1 4372 5642 -528 461 281 101 35 chr1 191702520 191702748 -50961605 + MIR SINE MIR 20 262 0 1903 152 0 10 chr1 191704084 191704387 -50959966 + AluSx SINE Alu 1 300 -12 291 54 0 0 chr1 191704517 191704554 -50959799 + (TG)n Simple_repeat Simple_repeat 1 37 0 345 188 14 0 chr1 191704687 191704756 -50959597 - L2 LINE L2 -19 3294 3225 255 61 0 0 chr1 191705696 191705729 -50958624 + (CA)n Simple_repeat Simple_repeat 2 34 0 269 89 22 0 chr1 191705973 191706018 -50958335 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 3566 110 15 21 chr1 191706018 191706628 -50957725 + MER4B LTR ERV1 1 772 -7 259 253 44 144 chr1 191708775 191709004 -50955349 - MIR SINE MIR -13 249 44 215 170 21 0 chr1 191709335 191709382 -50954971 + (TA)n Simple_repeat Simple_repeat 2 49 0 216 280 112 56 chr1 191709595 191709702 -50954651 - L2 LINE L2 0 3313 3201 2009 162 0 0 chr1 191709756 191710059 -50954294 + AluJb SINE Alu 1 303 -9 1032 208 173 35 chr1 191710301 191710647 -50953706 + MER57A LTR ERV1 1 394 -9 426 286 21 21 chr1 191710719 191710859 -50953494 + MIR3 SINE MIR 39 178 -30 341 290 53 29 chr1 191713262 191713446 -50950907 + L1ME LINE L1 5424 5555 -611 330 26 0 0 chr1 191713463 191713502 -50950851 + (TG)n Simple_repeat Simple_repeat 2 40 0 3412 118 49 10 chr1 191713817 191714326 -50950027 + MER1A DNA MER1_type 1 529 0 2242 126 0 0 chr1 191714731 191715041 -50949312 + AluSq SINE Alu 2 311 -2 328 351 109 0 chr1 191715727 191715892 -50948461 + L2 LINE L2 2871 3053 -219 1872 155 0 3 chr1 191715923 191716226 -50948127 + AluSx SINE Alu 1 302 -10 213 267 133 42 chr1 191716229 191716349 -50948004 + L2 LINE L2 3162 3292 -21 502 162 0 67 chr1 191716442 191716515 -50947838 + HY3 scRNA scRNA 3 68 -33 2452 138 36 17 chr1 191716515 191716935 -50947418 + MSTA LTR MaLR 1 428 0 502 162 0 67 chr1 191716935 191716966 -50947387 + HY3 scRNA scRNA 68 100 -1 2207 118 0 3 chr1 191717612 191717916 -50946437 + AluSq SINE Alu 1 303 -10 637 203 52 13 chr1 191717921 191718074 -50946279 + L1MA8 LINE L1 6126 6284 -7 825 203 53 0 chr1 191719192 191719399 -50944954 + L1MD3 LINE L1 7762 7979 -16 266 191 29 73 chr1 191719848 191719916 -50944437 - AluJ/FRAM SINE Alu -12 290 226 322 229 0 0 chr1 191720028 191720089 -50944264 - Tigger5 DNA MER2_type 0 2323 2263 33 25 0 0 chr1 191720131 191720171 -50944182 + AT_rich Low_complexity Low_complexity 1 40 0 358 359 41 15 chr1 191720550 191720745 -50943608 - L3b LINE CR1 -33 1550 1351 3101 162 6 4 chr1 191722318 191722829 -50941524 - MER44D DNA MER2_type 0 605 222 781 189 0 13 chr1 191723039 191723198 -50941155 + L1MB1 LINE L1 6011 6167 -1 1353 193 0 49 chr1 191723620 191723884 -50940469 - AluJo SINE Alu -19 293 43 304 317 40 88 chr1 191724069 191724296 -50940057 + L2 LINE L2 3098 3313 0 454 331 43 5 chr1 191724483 191724667 -50939686 + L2 LINE L2 2567 2757 -557 291 338 118 7 chr1 191724929 191725065 -50939288 + L2 LINE L2 2945 3095 -177 1600 288 59 45 chr1 191725150 191725322 -50939031 - L2 LINE L2 -1 3312 3144 1881 171 126 8 chr1 191725322 191725703 -50938650 + MSTB LTR MaLR 1 426 0 1600 288 59 45 chr1 191725703 191726425 -50937928 - L2 LINE L2 -169 3144 2400 390 301 55 12 chr1 191726426 191726589 -50937764 - L2 LINE L2 -1129 2185 2016 1948 191 17 19 chr1 191726685 191726769 -50937584 + MLT1A1 LTR MaLR 1 84 -281 1696 186 7 3 chr1 191726769 191727059 -50937294 + AluJb SINE Alu 1 291 -21 1948 191 17 19 chr1 191727059 191727336 -50937017 + MLT1A1 LTR MaLR 84 361 -4 1401 133 176 4 chr1 191727480 191727736 -50936617 - AluJb SINE Alu -12 300 1 716 221 6 0 chr1 191728723 191728886 -50935467 + L1PBa LINE L1 6 169 -6694 6641 142 37 4 chr1 191728900 191729471 -50934882 + L1PBa LINE L1 1381 1932 -4931 558 177 35 9 chr1 191729471 191729584 -50934769 + L1PA8A LINE L1 6016 6131 0 6641 142 37 4 chr1 191729584 191730189 -50934164 + L1PBa LINE L1 1932 2596 -4267 287 310 9 0 chr1 191780199 191780312 -50884041 + L1MEc LINE L1 1644 1757 -4639 7129 232 43 24 chr1 191780314 191781859 -50882494 + L1MEc LINE L1 2352 3953 -2262 1782 165 0 10 chr1 191781859 191782162 -50882191 + AluJb SINE Alu 1 300 -12 7129 232 43 24 chr1 191782162 191782839 -50881514 + L1MEc LINE L1 3953 4616 -1599 305 200 47 60 chr1 191782840 191782990 -50881363 + (TTATA)n Simple_repeat Simple_repeat 1 148 0 231 182 0 0 chr1 191783008 191783052 -50881301 + L1MEc LINE L1 4632 4675 -1540 247 237 17 0 chr1 191783407 191783466 -50880887 + MER3 DNA MER1_type 31 90 -119 * 1077 149 9 65 chr1 191783429 191783643 -50880710 - MER3 DNA MER1_type -6 203 2 401 341 60 6 chr1 191784246 191784413 -50879940 - MIR SINE MIR -82 180 5 823 303 12 33 chr1 191784957 191785294 -50879059 + L1MEc LINE L1 39 368 -6028 1018 271 48 56 chr1 191785320 191785837 -50878516 + L1MEc LINE L1 724 1236 -5160 414 205 77 0 chr1 191785843 191785921 -50878432 + Tigger1 DNA MER2_type 2 85 -2333 13422 129 22 8 chr1 191786024 191788119 -50876234 + Tigger1 DNA MER2_type 294 2418 0 901 236 101 25 chr1 191788130 191788486 -50875867 + L1MEc LINE L1 1256 1638 -4758 865 245 18 18 chr1 191788467 191788745 -50875608 + L1MEc LINE L1 5102 5379 -836 * 759 220 0 40 chr1 191788951 191788977 -50875376 + L1MEc LINE L1 1629 1655 -4741 2068 123 0 7 chr1 191788977 191789283 -50875070 + AluSq SINE Alu 3 306 0 759 220 0 40 chr1 191789283 191789455 -50874898 + L1MEc LINE L1 1654 1820 -4576 809 233 149 24 chr1 191789835 191790084 -50874269 - LTR16A1 LTR ERVL 0 457 178 3170 201 76 30 chr1 191790117 191790929 -50873424 - MER63C DNA MER1_type -5 925 76 307 158 42 21 chr1 191790929 191791024 -50873329 + GA-rich Low_complexity Low_complexity 4 100 0 288 131 66 0 chr1 191791028 191791089 -50873264 - MER63C DNA MER1_type -860 70 6 461 265 7 48 chr1 191791101 191791248 -50873105 - LTR16A1 LTR ERVL -309 148 8 1067 318 78 5 chr1 191791258 191791695 -50872658 + L2 LINE L2 1897 2365 -949 233 267 13 27 chr1 191792023 191792098 -50872255 + L1MC4a LINE L1 5732 5805 -2003 1840 54 0 104 chr1 191792179 191792458 -50871895 - AluY SINE Alu -17 294 45 1119 293 38 34 chr1 191792619 191793063 -50871290 - L2 LINE L2 0 3313 2868 300 83 0 0 chr1 191793782 191793830 -50870523 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 988 297 39 48 chr1 191794140 191794867 -50869486 + L1MEc LINE L1 639 1358 -5038 24 0 0 0 chr1 191794933 191794957 -50869396 + AT_rich Low_complexity Low_complexity 1 24 0 1294 263 106 27 chr1 191795033 191795359 -50868994 + L1MEc LINE L1 1597 1896 -4500 2241 112 141 5 chr1 191795359 191795734 -50868619 + MSTA LTR MaLR 1 426 -2 1294 263 106 27 chr1 191795734 191796103 -50868250 + L1MEc LINE L1 1896 2347 -4049 207 0 0 0 chr1 191796760 191796783 -50867570 + (A)n Simple_repeat Simple_repeat 1 23 0 289 270 80 86 chr1 191796821 191796984 -50867369 - MIR SINE MIR -78 184 23 1424 256 43 53 chr1 191797492 191797616 -50866737 + L1MEc LINE L1 2315 2439 -3776 2267 114 3 0 chr1 191797616 191797922 -50866431 + AluSx SINE Alu 1 307 -5 1424 256 43 53 chr1 191797922 191798419 -50865934 + L1MEc LINE L1 2439 2930 -3285 243 224 26 43 chr1 191799164 191799280 -50865073 + A-rich Low_complexity Low_complexity 1 114 0 531 0 0 0 chr1 191799444 191799503 -50864850 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 21 57 0 0 chr1 191799963 191799998 -50864355 + AT_rich Low_complexity Low_complexity 1 35 0 244 229 156 41 chr1 191800081 191800203 -50864150 + L1MC4a LINE L1 6186 6321 -1487 30 0 0 0 chr1 191801748 191801778 -50862575 + AT_rich Low_complexity Low_complexity 1 30 0 299 345 0 0 chr1 191802864 191802951 -50861402 + MIR3 SINE MIR 120 206 -2 444 232 72 32 chr1 191803573 191803698 -50860655 - L2 LINE L2 0 3313 3184 21 0 0 0 chr1 191804954 191804975 -50859378 + AT_rich Low_complexity Low_complexity 1 21 0 662 270 80 15 chr1 191806072 191806272 -50858081 + MIR SINE MIR 20 232 -30 * 1581 247 60 23 chr1 191806271 191806756 -50857597 + MER74B LTR ERVL 53 555 -67 855 200 33 0 chr1 191806994 191807174 -50857179 - MER5A DNA MER1_type 0 189 4 335 243 72 18 chr1 191807680 191807791 -50856562 - MIR SINE MIR -38 224 108 218 313 42 21 chr1 191807849 191807945 -50856408 + MIR3 SINE MIR 96 193 -15 753 123 80 75 chr1 191808207 191808348 -50856005 + MER53 DNA DNA 1 145 -44 1642 195 0 10 chr1 191808348 191808656 -50855697 - AluJo SINE Alu -6 306 2 753 123 80 75 chr1 191808656 191808701 -50855652 + MER53 DNA DNA 145 188 -1 204 267 0 0 chr1 191809281 191809326 -50855027 - L2 LINE L2 -42 3230 3186 1709 189 4 0 chr1 191809363 191809671 -50854682 + AluSx SINE Alu 1 309 0 528 285 113 74 chr1 191810089 191810398 -50853955 - L2 LINE L2 -3 3310 2990 206 329 71 0 chr1 191812220 191812290 -50852063 + L2 LINE L2 3146 3220 -52 571 295 70 55 chr1 191813369 191813782 -50850571 + L1MC4a LINE L1 5511 5935 -186 258 32 0 0 chr1 191813782 191813813 -50850540 + (TATG)n Simple_repeat Simple_repeat 1 31 0 571 295 70 55 chr1 191813813 191813945 -50850408 + L1MC4a LINE L1 5935 6064 -57 729 276 44 16 chr1 191814041 191814375 -50849978 + L1MC4 LINE L1 1272 1606 -4822 299 241 80 27 chr1 191814524 191814636 -50849717 + L1MC4 LINE L1 5049 5166 -1260 677 236 153 11 chr1 191814659 191815115 -50849238 + L1MC4 LINE L1 5935 6423 -23 1971 241 15 15 chr1 191815129 191815652 -50848701 + L1MD3 LINE L1 7473 7995 0 438 281 48 14 chr1 191817542 191817688 -50846665 - MLT1K LTR MaLR -108 480 330 291 321 145 0 chr1 191817962 191818121 -50846232 - MIR SINE MIR -34 228 47 297 278 213 0 chr1 191818642 191818750 -50845603 - L2 LINE L2 -4 3268 3138 242 276 0 0 chr1 191818758 191818816 -50845537 + CT-rich Low_complexity Low_complexity 1 58 0 479 279 7 71 chr1 191818824 191818964 -50845389 + MER91A DNA MER1_type 55 185 -11 749 153 6 0 chr1 191818981 191819138 -50845215 + CT-rich Low_complexity Low_complexity 1 158 0 238 428 42 33 chr1 191819158 191819464 -50844889 - L2 LINE L2 -46 3226 2918 604 236 0 8 chr1 191819585 191819708 -50844645 + FLAM_A SINE Alu 3 124 -9 22 0 0 0 chr1 191819927 191819949 -50844404 + AT_rich Low_complexity Low_complexity 1 22 0 2334 86 10 3 chr1 191820157 191820459 -50843894 + AluSx SINE Alu 1 304 -8 2173 112 20 0 chr1 191821673 191821968 -50842385 + AluSx SINE Alu 12 312 0 466 253 75 0 chr1 191822402 191822548 -50841805 - MER103 DNA DNA -2 164 8 24 0 0 0 chr1 191822630 191822654 -50841699 + AT_rich Low_complexity Low_complexity 1 24 0 471 188 0 12 chr1 191822723 191822808 -50841545 + AluJ/FLAM SINE Alu 1 84 -228 35 78 0 0 chr1 191822967 191823044 -50841309 + AT_rich Low_complexity Low_complexity 1 77 0 26 30 0 0 chr1 191823073 191823106 -50841247 + AT_rich Low_complexity Low_complexity 1 33 0 4781 91 16 3 chr1 191823764 191824443 -50839910 + L1PB3 LINE L1 5465 6152 -2 180 260 100 40 chr1 191827236 191827336 -50837017 - L3 LINE CR1 -390 1187 1082 1731 199 49 86 chr1 191827921 191828433 -50835920 + L1ME2 LINE L1 5662 6154 -10 314 263 44 9 chr1 191828583 191828697 -50835656 + L1MC4 LINE L1 7924 8041 -1 469 166 91 141 chr1 191829326 191829436 -50834917 - MER53 DNA DNA 0 189 92 189 0 0 0 chr1 191829436 191829457 -50834896 + (TA)n Simple_repeat Simple_repeat 2 22 0 469 166 91 141 chr1 191829457 191829545 -50834808 - MER53 DNA DNA -97 92 1 2105 104 0 42 chr1 191829697 191830005 -50834348 - AluSg SINE Alu -15 295 1 785 252 84 34 chr1 191831952 191832190 -50832163 - MIR SINE MIR 0 262 13 31 44 0 0 chr1 191832214 191832259 -50832094 + AT_rich Low_complexity Low_complexity 1 45 0 1150 99 0 0 chr1 191832606 191832768 -50831585 + L1MA5A LINE L1 6126 6287 -10 756 312 36 4 chr1 191834870 191835123 -50829230 - MIR SINE MIR 0 262 2 181 320 0 0 chr1 191835172 191835222 -50829131 - L2 LINE L2 -29 3243 3194 600 306 53 5 chr1 191835308 191835514 -50828839 - MIR SINE MIR -3 259 44 674 289 104 50 chr1 191836031 191836453 -50827900 - LTR33 LTR ERVL -2 519 75 1540 22 0 0 chr1 191836719 191836899 -50827454 + L1PA2 LINE L1 5974 6153 -2 763 258 0 0 chr1 191836987 191837165 -50827188 - MER5B DNA MER1_type 0 178 1 582 276 186 5 chr1 191837662 191837883 -50826470 + MIR SINE MIR 2 262 0 21 0 0 0 chr1 191838840 191838861 -50825492 + AT_rich Low_complexity Low_complexity 1 21 0 2916 135 46 10 chr1 191839262 191839766 -50824587 + L1PB4 LINE L1 5628 6149 -7 318 210 57 113 chr1 191839977 191840101 -50824252 - MIR3 SINE MIR -7 201 85 334 162 0 0 chr1 191840584 191840658 -50823695 + L1PA13 LINE L1 2707 2780 -4069 16663 167 17 11 chr1 191840721 191841972 -50822381 + L1PA13 LINE L1 2789 4031 -2835 2164 132 3 0 chr1 191841972 191842283 -50822070 + AluSx SINE Alu 1 312 0 16663 167 17 11 chr1 191842283 191844246 -50820107 + L1PA13 LINE L1 4031 6016 -850 279 0 0 0 chr1 191844246 191844277 -50820076 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 16663 167 17 11 chr1 191844277 191845129 -50819224 + L1PA13 LINE L1 6016 6862 -4 362 308 120 30 chr1 191845194 191845428 -50818925 - MIR SINE MIR -6 256 2 836 97 71 0 chr1 191845643 191845756 -50818597 - AluYb8 SINE Alu -197 121 1 595 287 13 0 chr1 191846500 191846657 -50817696 - MLT2B1 LTR ERVL -349 171 13 1050 237 96 50 chr1 191847558 191847934 -50816419 + MLT2B1 LTR ERVL 13 405 -115 409 148 0 0 chr1 191847957 191848018 -50816335 - FLAM_A SINE Alu -51 91 31 338 197 0 0 chr1 191848056 191848127 -50816226 + MLT2B1 LTR ERVL 410 480 -40 770 157 14 27 chr1 191848660 191848807 -50815546 - Tigger1 DNA MER2_type 0 2418 2274 287 154 49 49 chr1 191848868 191848991 -50815362 + GA-rich Low_complexity Low_complexity 3 125 0 220 98 39 20 chr1 191848994 191849045 -50815308 + (CAA)n Simple_repeat Simple_repeat 2 53 0 1850 136 7 4 chr1 191849058 191849331 -50815022 - AluSx SINE Alu -38 274 1 1137 187 24 11 chr1 191849360 191849636 -50814717 + L1MC4a LINE L1 7551 7995 0 341 337 35 45 chr1 191854249 191854448 -50809905 - L2 LINE L2 -194 3078 2882 756 181 17 40 chr1 191854993 191855170 -50809183 - MER3 DNA MER1_type -83 126 1 1491 170 139 9 chr1 191855925 191856248 -50808105 - MLT1A1 LTR MaLR 0 365 1 180 152 0 0 chr1 191857207 191857240 -50807113 + GA-rich Low_complexity Low_complexity 2 34 0 937 209 24 29 chr1 191858194 191858404 -50805949 + MER58A DNA MER1_type 3 211 -13 447 326 84 11 chr1 191858409 191858587 -50805766 + MIR SINE MIR 45 235 -27 2331 91 0 0 chr1 191858718 191859015 -50805338 + AluSx SINE Alu 1 297 -15 2775 116 14 7 chr1 191859031 191859462 -50804891 - MER57B LTR ERV1 0 434 1 187 325 71 24 chr1 191860936 191861062 -50803291 - MIR SINE MIR -97 165 34 404 336 29 7 chr1 191862633 191862770 -50801583 - MIR SINE MIR -110 152 13 432 322 9 0 chr1 191865416 191865531 -50798822 - L2 LINE L2 -6 3307 3192 1317 268 73 20 chr1 191865559 191865955 -50798398 - LTR40a LTR ERVL 0 519 103 297 137 20 20 chr1 191866968 191867019 -50797334 - LTR40b LTR ERVL -390 72 22 470 335 72 0 chr1 191867249 191867443 -50796910 + MIR SINE MIR 50 257 -5 431 273 173 7 chr1 191867484 191867623 -50796730 - MIR SINE MIR -73 189 28 1817 154 7 10 chr1 191867704 191868010 -50796343 + AluJb SINE Alu 4 308 -4 407 262 255 0 chr1 191868014 191868159 -50796194 + MIR SINE MIR 55 236 -26 200 132 0 26 chr1 191868170 191868208 -50796145 + (TTA)n Simple_repeat Simple_repeat 3 39 0 878 254 15 38 chr1 191868806 191869070 -50795283 + MIR SINE MIR 2 259 -3 746 101 0 9 chr1 191869976 191870085 -50794268 + AluY SINE Alu 1 108 -203 2004 101 47 0 chr1 191870526 191870803 -50793550 - AluSx SINE Alu -22 290 1 36 40 0 0 chr1 191871005 191871055 -50793298 + AT_rich Low_complexity Low_complexity 1 50 0 1555 155 17 0 chr1 191871077 191871316 -50793037 - AluSx SINE Alu -20 292 50 515 256 92 30 chr1 191871330 191871494 -50792859 + LTR16C LTR ERVL 1 174 -317 30 27 0 0 chr1 191871497 191871534 -50792819 + AT_rich Low_complexity Low_complexity 1 37 0 530 134 0 12 chr1 191871553 191871635 -50792718 - MLT1A1 LTR MaLR -266 99 19 1184 139 9 19 chr1 191871635 191871851 -50792502 + L1MA8 LINE L1 6075 6288 -3 1173 255 74 60 chr1 191871856 191872780 -50791573 + L1ME3A LINE L1 4731 5656 -506 879 200 86 24 chr1 191872780 191872990 -50791363 + MER58A DNA MER1_type 2 224 0 1173 255 74 60 chr1 191872990 191873293 -50791060 + L1ME3A LINE L1 5656 5953 -209 464 158 69 0 chr1 191873374 191873475 -50790878 - L1MA8 LINE L1 -4 6287 6180 714 275 88 17 chr1 191873736 191874308 -50790045 - HAL1 LINE L1 -1710 797 12 10392 35 0 3 chr1 191874351 191876368 -50787985 + L1PA5 LINE L1 4138 6151 -3 201 264 132 44 chr1 191876774 191876865 -50787488 - MIR SINE MIR -80 182 84 32 0 0 0 chr1 191876955 191876987 -50787366 + AT_rich Low_complexity Low_complexity 1 32 0 230 81 27 0 chr1 191877119 191877156 -50787197 + (CA)n Simple_repeat Simple_repeat 2 39 0 255 277 155 26 chr1 191878072 191878227 -50786126 + MIR SINE MIR 8 182 -80 276 327 150 5 chr1 191878983 191879203 -50785150 - L2 LINE L2 -450 2864 2613 262 229 0 0 chr1 191881083 191881144 -50783209 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 320 300 17 8 chr1 191881519 191881639 -50782714 - L2 LINE L2 -969 2345 2225 186 361 24 0 chr1 191881641 191881724 -50782629 - L2 LINE L2 -255 3017 2933 2135 104 0 16 chr1 191881849 191882158 -50782195 - AluSx SINE Alu -7 305 2 22 35 0 0 chr1 191883017 191883046 -50781307 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 191883060 191883084 -50781269 + AT_rich Low_complexity Low_complexity 1 24 0 1971 260 131 9 chr1 191884103 191884911 -50779442 + L2 LINE L2 2153 3069 -244 392 237 68 119 chr1 191885017 191885236 -50779117 + L2 LINE L2 3106 3313 0 1808 179 0 3 chr1 191885239 191885541 -50778812 + AluJb SINE Alu 2 302 -10 379 300 20 0 chr1 191886000 191886100 -50778253 + MER69A DNA AcHobo 1 102 -75 667 239 38 16 chr1 191887586 191887770 -50776583 + MER113 DNA MER1_type? 271 458 -63 669 243 45 23 chr1 191892238 191892255 -50772098 + Charlie2b DNA MER1_type 172 187 -2595 501 66 0 121 chr1 191892255 191892346 -50772007 + MADE1 DNA Mariner 1 80 0 669 243 45 23 chr1 191892346 191892505 -50771848 + Charlie2b DNA MER1_type 187 352 -2430 905 244 142 6 chr1 191892521 191892865 -50771488 + Charlie2b DNA MER1_type 829 1219 -1563 660 186 25 12 chr1 191892899 191893060 -50771293 + Charlie2b DNA MER1_type 2080 2242 -540 1397 151 16 0 chr1 191893086 191893331 -50771022 - L1MA4 LINE L1 -6 6294 6046 4493 166 40 121 chr1 191893418 191893809 -50770544 - Charlie1 DNA MER1_type -98 2663 2242 1014 191 0 5 chr1 191893809 191894003 -50770350 + L1PB4 LINE L1 5961 6153 -3 4493 166 40 121 chr1 191894003 191894115 -50770238 - Charlie1 DNA MER1_type -519 2242 2122 1966 155 3 0 chr1 191894115 191894412 -50769941 - AluJb SINE Alu -14 298 1 4493 166 40 121 chr1 191894412 191895381 -50768972 - Charlie1 DNA MER1_type -639 2122 5 2607 148 18 5 chr1 191895404 191895959 -50768394 - L1MA7 LINE L1 -3 6288 5621 432 244 23 59 chr1 191895968 191896189 -50768164 + Charlie2b DNA MER1_type 2570 2782 0 266 257 54 83 chr1 191896555 191896763 -50767590 - L1ME4a LINE L1 -94 6027 5825 2224 123 0 0 chr1 191896763 191897073 -50767280 + AluSg SINE Alu 1 310 0 266 257 54 83 chr1 191897073 191897105 -50767248 - L1ME4a LINE L1 -296 5825 5794 230 351 48 12 chr1 191897117 191897285 -50767068 - L1ME4a LINE L1 -539 5582 5409 25 95 0 0 chr1 191897731 191897805 -50766548 + AT_rich Low_complexity Low_complexity 1 74 0 1816 152 31 17 chr1 191897975 191898265 -50766088 - AluSx SINE Alu -18 294 1 290 361 0 0 chr1 191898478 191898597 -50765756 - L1ME4a LINE L1 -2012 4134 4016 369 0 0 0 chr1 191899186 191899227 -50765126 + (TA)n Simple_repeat Simple_repeat 1 41 0 2142 120 3 40 chr1 191899401 191899751 -50764602 + MER1B DNA MER1_type 1 337 0 467 297 156 10 chr1 191900418 191900731 -50763622 - HAL1b LINE L1 -611 1602 399 225 44 0 0 chr1 191901327 191901372 -50762981 - LTR66 LTR ERVL -171 439 395 203 300 100 0 chr1 191901674 191901744 -50762609 + L2 LINE L2 3225 3301 -12 319 239 130 22 chr1 191903233 191903371 -50760982 + L1ME4a LINE L1 5967 6119 -2 270 0 0 0 chr1 191904085 191904115 -50760238 + (CA)n Simple_repeat Simple_repeat 1 30 0 475 336 65 18 chr1 191904375 191904604 -50759749 - MIR SINE MIR -3 259 20 756 225 65 40 chr1 191905846 191906046 -50758307 - MIR SINE MIR -24 238 34 2350 88 3 0 chr1 191906379 191906675 -50757678 + AluSg SINE Alu 3 299 -11 289 291 51 8 chr1 191907731 191907848 -50756505 - MIR3 SINE MIR -2 206 85 180 111 0 0 chr1 191910181 191910208 -50754145 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 211 308 158 33 chr1 191910210 191910330 -50754023 - L2 LINE L2 -17 3255 3121 182 360 100 60 chr1 191910760 191911010 -50753343 - L2 LINE L2 -376 2938 2679 2050 128 3 7 chr1 191911161 191911465 -50752888 + AluSx SINE Alu 1 303 -9 544 122 0 0 chr1 191911690 191911764 -50752589 + THE1B LTR MaLR 1 74 -290 1909 149 20 3 chr1 191912276 191912572 -50751781 - AluJb SINE Alu -11 301 1 532 288 108 19 chr1 191912651 191912863 -50751490 - MIR SINE MIR -12 250 20 719 286 20 5 chr1 191912911 191913110 -50751243 + MIR SINE MIR 48 249 -13 186 189 0 0 chr1 191913136 191913173 -50751180 + (TTA)n Simple_repeat Simple_repeat 1 37 0 336 265 17 51 chr1 191913198 191913315 -50751038 + L2 LINE L2 1707 1819 -1495 736 244 12 0 chr1 191913367 191913527 -50750826 + MLT1J2 LTR MaLR 3 164 -286 195 162 0 0 chr1 191913847 191913884 -50750469 + (CA)n Simple_repeat Simple_repeat 1 37 0 302 207 99 45 chr1 191913892 191914003 -50750350 + MLT1J1 LTR MaLR 328 444 -2 358 212 171 20 chr1 191914026 191914172 -50750181 + L2 LINE L2 1931 2098 -1216 627 232 134 26 chr1 191914177 191914371 -50749982 - MER58C DNA MER1_type 0 215 1 1365 292 128 23 chr1 191914387 191915090 -50749263 + L2 LINE L2 2115 2891 -423 2131 135 125 33 chr1 191915090 191915317 -50749036 + MSTA LTR MaLR 1 206 -222 2082 139 7 0 chr1 191915317 191915627 -50748726 + AluSx SINE Alu 1 312 0 2131 135 125 33 chr1 191915627 191915791 -50748562 + MSTA LTR MaLR 206 428 0 293 340 78 0 chr1 191915926 191916029 -50748324 + L2 LINE L2 3189 3299 -14 2266 143 129 8 chr1 191916312 191916691 -50747662 + MSTA LTR MaLR 4 428 0 207 286 261 19 chr1 191917183 191917344 -50747009 + L3b LINE CR1 1183 1382 -201 211 250 42 0 chr1 191917858 191917906 -50746447 - MIR SINE MIR -5 257 208 2923 126 9 53 chr1 191919886 191920185 -50744168 - L1P4 LINE L1 -433 5732 5422 2472 70 3 0 chr1 191920185 191920485 -50743868 - AluY SINE Alu -10 301 1 2923 126 9 53 chr1 191920485 191920943 -50743410 - L1P4 LINE L1 -743 5422 5007 294 269 20 75 chr1 191921238 191921375 -50742978 + L1ME3A LINE L1 5772 5892 -278 2275 92 34 0 chr1 191921375 191921670 -50742683 + AluSx SINE Alu 1 305 -7 294 269 20 75 chr1 191921670 191921724 -50742629 + L1ME3A LINE L1 5892 5947 -223 1675 176 95 15 chr1 191921801 191922137 -50742216 + MLT1A1 LTR MaLR 1 363 -2 529 141 0 0 chr1 191922192 191922270 -50742083 + AluSg/x SINE Alu 219 296 -16 780 142 0 0 chr1 191922428 191922548 -50741805 + AluSc SINE Alu 190 309 0 21 36 0 0 chr1 191922804 191922832 -50741521 + GC_rich Low_complexity Low_complexity 1 28 0 2773 82 38 90 chr1 191922883 191923385 -50740968 + SVA Other Other 393 868 -518 1462 141 5 0 chr1 191923539 191923745 -50740608 - AluSx SINE Alu -105 207 1 2121 221 82 95 chr1 191923825 191924122 -50740231 + MER21B LTR ERV1 17 317 -546 1681 175 0 49 chr1 191924122 191924447 -50739906 + AluJo SINE Alu 1 309 -3 2121 221 82 95 chr1 191924447 191924720 -50739633 + MER21B LTR ERV1 317 575 -288 2386 106 0 0 chr1 191924720 191925032 -50739321 + AluSx SINE Alu 1 312 0 2121 221 82 95 chr1 191925032 191925267 -50739086 + MER21B LTR ERV1 575 812 -51 238 281 163 44 chr1 191925481 191925616 -50738737 + MER5B DNA MER1_type 7 157 -21 651 202 8 8 chr1 191926296 191926415 -50737938 + FLAM_A SINE Alu 1 119 -14 316 293 242 0 chr1 191926993 191927191 -50737162 + L1ME4a LINE L1 5874 6119 -2 186 250 17 17 chr1 191927477 191927537 -50736816 - L2 LINE L2 -963 2351 2292 216 158 0 0 chr1 191927557 191927595 -50736758 + GA-rich Low_complexity Low_complexity 3 40 0 1226 166 23 23 chr1 191927762 191927979 -50736374 - MER20 DNA MER1_type 0 219 3 312 375 53 79 chr1 191928069 191928373 -50735980 - L2 LINE L2 -20 3252 2957 542 221 93 0 chr1 191929391 191929531 -50734822 - MIR SINE MIR -32 230 78 2342 108 0 6 chr1 191929614 191929929 -50734424 - AluSq SINE Alu 0 313 1 365 261 46 8 chr1 191930232 191930362 -50733991 + L2 LINE L2 2185 2319 -995 842 273 87 28 chr1 191930370 191930659 -50733694 + MLT1J1 LTR MaLR 16 321 -125 325 24 24 0 chr1 191930772 191930813 -50733540 - MADE1 DNA Mariner -38 42 1 226 259 207 22 chr1 191930813 191930948 -50733405 + L2 LINE L2 2313 2472 -842 2479 120 19 8 chr1 191931051 191931410 -50732943 + L1PA15 LINE L1 5790 6152 -13 23 33 0 0 chr1 191931757 191931787 -50732566 + AT_rich Low_complexity Low_complexity 1 30 0 1832 166 0 0 chr1 191931963 191932241 -50732112 + AluJb SINE Alu 11 288 -24 2319 97 3 0 chr1 191932399 191932697 -50731656 - AluSp SINE Alu -14 299 1 2162 123 7 0 chr1 191933822 191934124 -50730229 - AluSx SINE Alu -8 304 1 304 322 41 16 chr1 191934756 191934877 -50729476 + MIR SINE MIR 20 143 -65 919 288 117 13 chr1 191935263 191935638 -50728715 + L2 LINE L2 2149 2562 -752 375 78 0 0 chr1 191936385 191936436 -50727917 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 1859 149 40 3 chr1 191936442 191936743 -50727610 - AluSx SINE Alu 0 312 1 1972 109 13 35 chr1 191936888 191937201 -50727152 - AluSx SINE Alu -6 306 1 27 0 0 0 chr1 191937203 191937230 -50727123 + AT_rich Low_complexity Low_complexity 1 27 0 239 288 8 38 chr1 191937534 191937666 -50726687 + CT-rich Low_complexity Low_complexity 2 129 0 2209 117 3 0 chr1 191937842 191938149 -50726204 - AluSx SINE Alu -4 308 1 318 266 206 23 chr1 191938350 191938725 -50725628 - L1ME LINE L1 -468 5702 5258 284 188 0 3 chr1 191938726 191938776 -50725577 + AluJ/FRAM SINE Alu 228 270 -32 228 35 0 0 chr1 191938779 191938808 -50725545 + (CA)n Simple_repeat Simple_repeat 2 30 0 2126 88 3 11 chr1 191938871 191939202 -50725151 - AluSg SINE Alu 0 329 1 367 343 19 0 chr1 191940208 191940316 -50724037 - L2 LINE L2 -26 3246 3137 2233 103 0 17 chr1 191940336 191940637 -50723716 - AluSq SINE Alu -17 296 1 1981 140 16 22 chr1 191940977 191941291 -50723062 + AluSx SINE Alu 1 312 0 389 357 148 11 chr1 191941467 191941840 -50722513 - L2 LINE L2 -710 2604 2181 838 301 46 64 chr1 191941877 191941956 -50722397 + L1MEd LINE L1 6 85 -6034 2174 116 0 0 chr1 191941956 191942257 -50722096 + AluSc SINE Alu 4 304 -5 838 301 46 64 chr1 191942257 191942696 -50721657 + L1MEd LINE L1 85 515 -5604 738 200 7 0 chr1 191942706 191942846 -50721507 - L1ME1 LINE L1 -5 6161 6021 811 126 9 0 chr1 191942851 191942962 -50721391 + FLAM_C SINE Alu 5 116 -27 1729 153 21 63 chr1 191943001 191943146 -50721207 - L1ME1 LINE L1 -134 6032 5882 2075 120 0 10 chr1 191943146 191943445 -50720908 - AluSx SINE Alu -16 296 1 1729 153 21 63 chr1 191943445 191943677 -50720676 - L1ME1 LINE L1 -284 5882 5671 451 343 6 18 chr1 191943669 191943835 -50720518 + L1MEd LINE L1 500 663 -5456 * 437 258 60 40 chr1 191943841 191944143 -50720210 + L1MEd LINE L1 721 1028 -5091 332 189 0 0 chr1 191944145 191944198 -50720155 - Alu SINE Alu -249 53 1 195 100 0 0 chr1 191944241 191944271 -50720082 + (CA)n Simple_repeat Simple_repeat 2 31 0 2295 101 7 7 chr1 191944329 191944636 -50719717 + AluSx SINE Alu 1 307 -5 302 41 0 61 chr1 191944914 191944963 -50719390 + (CA)n Simple_repeat Simple_repeat 2 47 0 1643 164 18 105 chr1 191945134 191945525 -50718828 - MLT1A1 LTR MaLR -3 362 6 656 274 87 0 chr1 191945543 191945762 -50718591 + Charlie1 DNA MER1_type 2 239 -2522 420 165 24 0 chr1 191945748 191945833 -50718520 + Charlie1 DNA MER1_type 2622 2708 -53 * 2078 122 3 0 chr1 191945933 191946221 -50718132 - AluSq SINE Alu -24 289 1 728 220 0 15 chr1 191946224 191946356 -50717997 - FLAM_A SINE Alu -3 130 1 424 294 37 7 chr1 191946362 191946498 -50717855 + L2 LINE L2 2570 2709 -605 2081 132 3 0 chr1 191946567 191946871 -50717482 + AluSx SINE Alu 1 305 -7 1794 131 31 0 chr1 191946880 191947140 -50717213 + AluSx SINE Alu 1 268 -44 198 0 0 0 chr1 191947144 191947166 -50717187 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 600 303 10 24 chr1 191947519 191947727 -50716626 + MARNA DNA Mariner 363 567 -19 2098 120 10 17 chr1 191948026 191948326 -50716027 + AluSx SINE Alu 3 300 -12 802 204 0 36 chr1 191948400 191948567 -50715786 + AluJo SINE Alu 122 282 -30 2037 107 53 0 chr1 191948698 191948979 -50715374 - AluSc SINE Alu -12 297 2 1537 140 102 19 chr1 191949265 191949529 -50714824 - AluJb SINE Alu -17 295 10 821 143 8 0 chr1 191949624 191949743 -50714610 - FLAM_C SINE Alu -12 131 12 181 289 123 26 chr1 191949814 191949928 -50714425 - L2 LINE L2 -12 3260 3136 2418 82 0 0 chr1 191950054 191950360 -50713993 + AluSq SINE Alu 8 313 0 204 97 0 0 chr1 191950429 191950460 -50713893 + (CAT)n Simple_repeat Simple_repeat 2 32 0 261 204 0 0 chr1 191950710 191950759 -50713594 - L2 LINE L2 -2 3270 3222 2085 135 0 0 chr1 191950843 191951131 -50713222 + AluSq SINE Alu 1 288 -25 843 201 35 12 chr1 191951243 191951412 -50712941 + MIR SINE MIR 30 202 -60 639 89 0 0 chr1 191951412 191951491 -50712862 + AluS SINE Alu 2 80 -233 25 0 0 0 chr1 191951591 191951616 -50712737 + AT_rich Low_complexity Low_complexity 1 25 0 227 54 27 0 chr1 191951681 191951718 -50712635 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 44031 48 3 1 chr1 191951730 191957864 -50706489 - L1PA4 LINE L1 0 6155 11 1885 154 0 0 chr1 191958244 191958524 -50705829 - AluSx SINE Alu -32 280 1 2033 121 0 0 chr1 191958538 191958841 -50705512 - AluSx SINE Alu 0 303 1 357 148 0 0 chr1 191958937 191958991 -50705362 + U6 snRNA snRNA 5 58 -49 1792 135 0 75 chr1 191959094 191959413 -50704940 - AluJb SINE Alu -17 295 1 56 29 0 0 chr1 191960313 191960383 -50703970 + AT_rich Low_complexity Low_complexity 1 70 0 1851 149 7 7 chr1 191960877 191961173 -50703180 + AluSx SINE Alu 1 296 -16 1826 234 97 99 chr1 191961207 191961517 -50702836 + HAL1 LINE L1 206 515 -1992 2143 124 0 3 chr1 191961517 191961824 -50702529 + AluSx SINE Alu 1 306 -6 1826 234 97 99 chr1 191961824 191962381 -50701972 + HAL1 LINE L1 515 1073 -1434 1827 67 0 9 chr1 191962381 191962606 -50701747 - AluSc SINE Alu -16 293 71 1826 234 97 99 chr1 191962606 191962817 -50701536 + HAL1 LINE L1 1073 1283 -1224 1291 203 0 59 chr1 191962826 191963112 -50701241 + AluJo SINE Alu 18 286 -26 684 241 102 20 chr1 191963156 191963401 -50700952 + HAL1 LINE L1 1273 1537 -970 1075 185 37 27 chr1 191963445 191963535 -50700818 + L1M4 LINE L1 2955 3043 -3103 1800 184 7 3 chr1 191963535 191963844 -50700509 + AluJo SINE Alu 1 310 -2 1075 185 37 27 chr1 191963844 191964050 -50700303 + L1M4 LINE L1 3043 3254 -2892 814 206 12 42 chr1 191964301 191964466 -50699887 - FAM SINE Alu -18 167 8 1796 164 14 0 chr1 191964950 191965236 -50699117 + AluJo SINE Alu 1 290 -22 214 283 17 0 chr1 191965290 191965350 -50699003 + (TATG)n Simple_repeat Simple_repeat 2 62 0 220 188 42 0 chr1 191965401 191965449 -50698904 + (CATA)n Simple_repeat Simple_repeat 1 50 0 1554 161 74 28 chr1 191965556 191965841 -50698512 - AluJo SINE Alu -3 299 2 219 88 0 0 chr1 191965843 191965877 -50698476 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 2316 72 7 0 chr1 191965877 191966156 -50698197 - AluY SINE Alu -30 281 1 2050 139 0 0 chr1 191966160 191966455 -50697898 - AluSx SINE Alu -17 295 1 2121 133 0 13 chr1 191966669 191966977 -50697376 - AluSx SINE Alu -8 304 1 24 53 0 0 chr1 191967114 191967152 -50697201 + AT_rich Low_complexity Low_complexity 1 38 0 403 311 72 54 chr1 191968221 191968498 -50695855 - L2 LINE L2 -780 2534 2253 1606 178 53 0 chr1 191968556 191968717 -50695636 - AluJo SINE Alu -16 296 112 201 39 0 0 chr1 191968717 191968743 -50695610 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1606 178 53 0 chr1 191968743 191968862 -50695491 - AluJo SINE Alu -200 112 1 252 0 0 0 chr1 191968927 191968955 -50695398 + (A)n Simple_repeat Simple_repeat 1 28 0 6464 63 5 70 chr1 191969336 191970795 -50693558 + SVA Other Other 433 1386 0 358 314 29 22 chr1 191970885 191971022 -50693331 - L2 LINE L2 -15 3298 3161 1918 149 3 10 chr1 191971334 191971635 -50692718 + AluSx SINE Alu 1 299 -13 2035 133 43 0 chr1 191971648 191971948 -50692405 + AluSq SINE Alu 1 313 0 1072 164 18 0 chr1 191972062 191972233 -50692120 + MER58B DNA MER1_type 168 341 0 192 158 0 0 chr1 191972576 191972614 -50691739 + T-rich Low_complexity Low_complexity 1 38 0 3162 124 37 38 chr1 191972619 191973535 -50690818 + pTR5 LTR ERV1 745 2030 -408 346 209 12 0 chr1 191973542 191973628 -50690725 + LTR30 LTR ERV1 556 642 -80 1700 63 0 9 chr1 191973631 191973854 -50690499 + pTR5 LTR ERV1 172 392 -2046 1507 175 11 8 chr1 191973861 191974124 -50690229 - AluJb SINE Alu -44 268 5 1829 157 0 17 chr1 191974345 191974639 -50689714 + AluJo SINE Alu 1 289 -23 410 188 71 0 chr1 191974734 191974819 -50689534 + U13 snRNA snRNA 2 92 -12 1919 138 11 7 chr1 191974902 191975184 -50689169 + AluSx SINE Alu 1 283 -29 183 42 0 0 chr1 191975184 191975208 -50689145 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 426 302 24 0 chr1 191975240 191975366 -50688987 - MIR SINE MIR 0 262 134 277 188 16 31 chr1 191975388 191975452 -50688901 - L2 LINE L2 0 3272 3210 2097 147 0 3 chr1 191976182 191976489 -50687864 + AluSx SINE Alu 1 306 -6 1867 161 14 0 chr1 191976592 191976883 -50687470 - AluSx SINE Alu -13 299 5 303 224 0 47 chr1 191977297 191977382 -50686971 + MIR3 SINE MIR 119 199 -9 2149 105 6 35 chr1 191977410 191977725 -50686628 - AluSq SINE Alu -2 311 6 358 252 94 24 chr1 191978005 191978132 -50686221 + L2 LINE L2 3021 3156 -157 2214 101 10 10 chr1 191978133 191978441 -50685912 - AluSp SINE Alu -5 308 1 245 204 0 0 chr1 191978444 191978488 -50685865 - Alu SINE Alu -2 131 88 2522 141 47 0 chr1 191978588 191978971 -50685382 + MER57A LTR ERV1 3 403 0 349 247 91 79 chr1 191979491 191979598 -50684755 + MIR SINE MIR 37 148 -114 2192 103 3 19 chr1 191979598 191979908 -50684445 + AluSg SINE Alu 1 305 -5 349 247 91 79 chr1 191979908 191979976 -50684377 + MIR SINE MIR 148 214 -48 2296 96 0 13 chr1 191980010 191980311 -50684042 - L1PA12 LINE L1 -11 6157 5861 2833 74 15 28 chr1 191980312 191980526 -50683827 + L1PA13 LINE L1 5471 5679 -484 2197 123 3 0 chr1 191980526 191980828 -50683525 + AluY SINE Alu 1 303 -8 2833 74 15 28 chr1 191980828 191981007 -50683346 + L1PA13 LINE L1 5679 5859 -304 697 309 62 19 chr1 191981132 191981388 -50682965 + MLT1H LTR MaLR 22 288 -261 310 208 177 39 chr1 191981424 191981554 -50682799 + MLT1H LTR MaLR 375 522 -27 351 180 31 2 chr1 191981579 191981689 -50682664 - MER105 DNA DNA -46 158 15 25 31 0 0 chr1 191981814 191981846 -50682507 + AT_rich Low_complexity Low_complexity 1 32 0 1260 171 159 12 chr1 191981850 191982107 -50682246 + AluJo SINE Alu 1 295 -7 228 35 0 0 chr1 191982107 191982136 -50682217 + (TA)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr1 191982396 191982424 -50681929 + AT_rich Low_complexity Low_complexity 1 28 0 2041 99 60 0 chr1 191982614 191982897 -50681456 + AluSx SINE Alu 1 300 -12 531 113 0 0 chr1 191982928 191983008 -50681345 + (TG)n Simple_repeat Simple_repeat 1 80 0 288 77 0 0 chr1 191983010 191983049 -50681304 + (TA)n Simple_repeat Simple_repeat 2 40 0 1940 105 23 56 chr1 191983119 191983424 -50680929 + AluSx SINE Alu 4 298 -14 332 371 0 7 chr1 191983453 191983596 -50680757 - L2 LINE L2 -301 2971 2830 1841 161 0 3 chr1 191983614 191983918 -50680435 + AluJb SINE Alu 1 303 -9 202 352 14 0 chr1 191984021 191984092 -50680261 - L2 LINE L2 -705 2609 2538 849 132 7 22 chr1 191984100 191984236 -50680117 - FLAM_C SINE Alu -5 138 5 2055 130 3 3 chr1 191984294 191984586 -50679767 + AluSx SINE Alu 1 292 -20 788 167 0 0 chr1 191984661 191984775 -50679578 + AluJb SINE Alu 172 285 -27 654 114 0 38 chr1 191984775 191984933 -50679420 + (TA)n Simple_repeat Simple_repeat 1 152 0 200 244 0 0 chr1 191985054 191985099 -50679254 + MIR SINE MIR 186 230 -32 934 142 0 8 chr1 191985170 191985304 -50679049 + FLAM_C SINE Alu 1 133 0 182 288 68 0 chr1 191985573 191985632 -50678721 - MIR SINE MIR -114 148 86 2259 107 0 0 chr1 191986503 191986802 -50677551 + AluSg SINE Alu 1 299 -11 892 291 84 22 chr1 191986811 191987217 -50677136 - LTR33 LTR ERVL -84 437 7 322 289 26 53 chr1 191988200 191988352 -50676001 + MLT1J2 LTR MaLR 83 230 -220 301 243 37 108 chr1 191988679 191988828 -50675525 + L1ME3A LINE L1 5777 5891 -279 2275 92 34 0 chr1 191988828 191989123 -50675230 + AluSx SINE Alu 1 305 -7 301 243 37 108 chr1 191989123 191989177 -50675176 + L1ME3A LINE L1 5891 5947 -223 1623 184 95 15 chr1 191989254 191989590 -50674763 + MLT1A1 LTR MaLR 1 363 -2 427 163 0 25 chr1 191989645 191989725 -50674628 + AluSg/x SINE Alu 216 293 -16 351 0 0 0 chr1 191989922 191989961 -50674392 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 258 178 0 148 chr1 191989973 191990001 -50674352 + L1M4 LINE L1 3304 3335 -2811 2047 131 6 13 chr1 191990001 191990314 -50674039 - AluSx SINE Alu -1 311 1 258 178 0 148 chr1 191990314 191990386 -50673967 + L1M4 LINE L1 3335 3389 -2757 21 0 0 0 chr1 191992316 191992337 -50672016 + AT_rich Low_complexity Low_complexity 1 21 0 9305 189 66 89 chr1 191993108 191994750 -50669603 + L1MD1 LINE L1 98 1777 -4763 2072 140 0 7 chr1 191994750 191995050 -50669303 - AluSx SINE Alu -14 298 1 9305 189 66 89 chr1 191995050 191995390 -50668963 + L1MD1 LINE L1 1777 2124 -4416 621 73 0 0 chr1 191995390 191995472 -50668881 - Alu SINE Alu -1 308 227 9305 189 66 89 chr1 191995472 191996294 -50668059 + L1MD1 LINE L1 2124 2998 -3542 817 196 0 0 chr1 191996294 191996427 -50667926 + AluJo SINE Alu 2 134 -178 9305 189 66 89 chr1 191996427 191997115 -50667238 + L1MD1 LINE L1 2998 3701 -2839 4998 129 9 10 chr1 191997117 191997902 -50666451 + L1PA13 LINE L1 5380 6163 0 2110 111 0 0 chr1 191998028 191998358 -50665995 + AluSg SINE Alu 2 331 0 487 233 94 6 chr1 191998366 191998525 -50665828 + L1MD1 LINE L1 3866 4038 -2502 413 171 29 0 chr1 191998525 191998595 -50665758 + MER72 LTR ERV1 587 658 -64 24 0 0 0 chr1 191998608 191998632 -50665721 + AT_rich Low_complexity Low_complexity 1 24 0 2950 249 68 36 chr1 191998639 191998716 -50665637 + L1MD1 LINE L1 4022 4095 -2445 1427 174 9 109 chr1 191998716 191999055 -50665298 + AluJb SINE Alu 1 305 -7 2950 249 68 36 chr1 191999055 192000009 -50664344 + L1MD1 LINE L1 4095 5086 -1454 827 172 28 14 chr1 192000009 192000154 -50664199 + AluJo SINE Alu 123 269 -43 40 37 0 0 chr1 192000154 192000208 -50664145 + AT_rich Low_complexity Low_complexity 1 54 0 376 288 0 24 chr1 192000214 192000339 -50664014 + L1MD1 LINE L1 5089 5210 -1330 * 3741 189 75 9 chr1 192000330 192001168 -50663185 + L1MD1 LINE L1 5744 6636 0 1588 96 9 14 chr1 192001176 192001396 -50662957 + AluJo SINE Alu 84 302 -10 2596 73 24 0 chr1 192001624 192001965 -50662388 + L1MA2 LINE L1 5609 5957 -347 1786 100 39 50 chr1 192001965 192002245 -50662108 + AluSx SINE Alu 1 277 -35 255 31 0 0 chr1 192002246 192002278 -50662075 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 234 208 0 0 chr1 192002306 192002359 -50661994 + CT-rich Low_complexity Low_complexity 1 53 0 374 237 148 0 chr1 192002525 192002660 -50661693 - MIR SINE MIR -14 248 94 29 60 0 0 chr1 192002725 192002775 -50661578 + AT_rich Low_complexity Low_complexity 1 50 0 784 194 97 71 chr1 192003849 192004045 -50660308 - AluJo SINE Alu -21 291 91 50 42 0 0 chr1 192004208 192004279 -50660074 + AT_rich Low_complexity Low_complexity 1 71 0 1075 111 0 0 chr1 192004363 192004507 -50659846 - AluSg/x SINE Alu -11 299 156 2138 108 0 20 chr1 192005266 192005572 -50658781 + AluSq SINE Alu 1 300 -13 1804 150 45 0 chr1 192005650 192005936 -50658417 + AluSx SINE Alu 1 299 -13 706 277 89 16 chr1 192006148 192006451 -50657902 + L2 LINE L2 2384 2708 -606 307 288 15 0 chr1 192006648 192006714 -50657639 + L2 LINE L2 3162 3228 -44 407 331 152 20 chr1 192006748 192007044 -50657309 + L2 LINE L2 2937 3271 -1 185 279 49 0 chr1 192007153 192007214 -50657139 - L2 LINE L2 0 3272 3209 39 0 0 0 chr1 192007282 192007321 -50657032 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 192008036 192008064 -50656289 + AT_rich Low_complexity Low_complexity 1 28 0 1903 159 13 7 chr1 192008132 192008441 -50655912 + AluJb SINE Alu 1 311 -1 315 0 0 0 chr1 192009001 192009036 -50655317 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2151 122 6 13 chr1 192009045 192009357 -50654996 + AluSx SINE Alu 1 310 -2 1264 66 6 11 chr1 192009365 192009546 -50654807 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1147 200 64 106 chr1 192010470 192010593 -50653760 + MLT1B LTR MaLR 3 130 -260 2279 89 10 3 chr1 192010593 192010884 -50653469 + AluSq SINE Alu 1 293 -20 1147 200 64 106 chr1 192010884 192011165 -50653188 + MLT1B LTR MaLR 130 390 0 741 171 0 8 chr1 192011264 192011381 -50652972 + FLAM_C SINE Alu 3 118 -25 4711 189 61 48 chr1 192011645 192011926 -50652427 - L1MD2 LINE L1 -2 6357 6081 1560 163 71 25 chr1 192011926 192012209 -50652144 + AluJo SINE Alu 1 296 -16 4711 189 61 48 chr1 192012209 192013403 -50650950 - L1MD2 LINE L1 -278 6081 4863 477 308 236 24 chr1 192013403 192013737 -50650616 - L2 LINE L2 -61 3252 2848 1211 226 7 39 chr1 192014309 192014615 -50649738 - AluJo SINE Alu -16 296 1 261 0 0 0 chr1 192014680 192014709 -50649644 + (A)n Simple_repeat Simple_repeat 1 29 0 344 339 148 11 chr1 192015320 192015509 -50648844 + L2 LINE L2 2860 3074 -198 780 188 8 0 chr1 192015569 192015697 -50648656 + AluJ SINE Alu 1 129 -173 327 283 0 22 chr1 192015730 192015822 -50648531 - L1MC4 LINE L1 -1339 6703 6614 1028 196 0 0 chr1 192015836 192016009 -50648344 + AluJ SINE Alu 125 297 -15 1158 82 0 92 chr1 192016047 192016110 -50648243 + L1PA8 LINE L1 6006 6073 -99 2420 84 0 19 chr1 192016110 192016420 -50647933 + AluSc SINE Alu 1 304 -5 1158 82 0 92 chr1 192016420 192016540 -50647813 + L1PA8 LINE L1 6073 6172 0 2035 139 0 7 chr1 192016545 192016875 -50647478 + AluSq SINE Alu 1 328 0 1458 220 35 15 chr1 192017477 192017818 -50646535 - MER87 LTR ERV1 0 541 194 1754 205 3 0 chr1 192018144 192018446 -50645907 + AluJo SINE Alu 1 303 -9 1956 132 0 0 chr1 192018517 192018783 -50645570 + AluSq SINE Alu 1 266 -47 850 136 14 7 chr1 192019498 192019668 -50644685 - AluJb SINE Alu 0 311 141 2341 40 0 11 chr1 192019670 192019946 -50644407 - AluY SINE Alu -12 299 27 411 137 0 0 chr1 192019955 192020028 -50644325 + (TA)n Simple_repeat Simple_repeat 2 74 0 10926 30 3 113 chr1 192020028 192021573 -50642780 - SVA Other Other -9 1377 2 201 46 15 77 chr1 192021578 192021643 -50642710 + (GGGAGA)n Simple_repeat Simple_repeat 1 61 0 733 211 0 8 chr1 192021649 192021782 -50642571 - AluJb SINE Alu -179 133 2 210 333 0 17 chr1 192022729 192022789 -50641564 - L2 LINE L2 -14 3299 3241 245 328 35 129 chr1 192022913 192023145 -50641208 - L2 LINE L2 -57 3215 3006 384 143 32 0 chr1 192023154 192023217 -50641136 + L1MC1 LINE L1 6258 6322 -11 709 125 0 0 chr1 192023222 192023318 -50641035 + AluS SINE Alu 2 97 -215 1400 160 19 35 chr1 192023846 192024102 -50640251 + AluJo SINE Alu 1 252 -60 21 0 0 0 chr1 192024671 192024692 -50639661 + AT_rich Low_complexity Low_complexity 1 21 0 954 161 81 0 chr1 192024884 192025033 -50639320 + MER21B LTR ERV1 328 488 -375 24 0 0 0 chr1 192025033 192025057 -50639296 + AT_rich Low_complexity Low_complexity 1 24 0 2940 6 0 0 chr1 192026064 192026377 -50637976 + AluYb8 SINE Alu 1 313 -5 2423 77 7 0 chr1 192026487 192026787 -50637566 + AluSp SINE Alu 1 302 -11 1845 128 59 35 chr1 192026844 192027133 -50637220 + AluSx SINE Alu 1 296 -16 200 376 43 11 chr1 192027537 192027630 -50636723 + MIR SINE MIR 2 97 -165 253 319 95 35 chr1 192027669 192027785 -50636568 - L2 LINE L2 -1 3312 3190 1949 106 0 8 chr1 192027787 192028042 -50636311 - AluSx SINE Alu -15 297 45 25 51 0 0 chr1 192028156 192028195 -50636158 + AT_rich Low_complexity Low_complexity 1 39 0 2030 132 0 35 chr1 192028349 192028660 -50635693 + AluSx SINE Alu 1 300 -12 2445 92 0 0 chr1 192030236 192030542 -50633811 - AluSx SINE Alu -6 306 1 2144 98 30 3 chr1 192031249 192031544 -50632809 - AluSx SINE Alu -9 303 1 1139 128 11 21 chr1 192031663 192031850 -50632503 - AluJo SINE Alu -9 303 119 909 176 28 6 chr1 192032231 192032413 -50631940 + MER53 DNA DNA 1 186 -3 964 168 0 36 chr1 192032415 192032582 -50631771 - AluJb SINE Alu -15 297 137 29 60 0 0 chr1 192032808 192032858 -50631495 + AT_rich Low_complexity Low_complexity 1 50 0 3686 108 26 9 chr1 192033210 192033757 -50630596 + L1PA13 LINE L1 5607 6162 -1 231 333 53 32 chr1 192034647 192034836 -50629517 - L2 LINE L2 -11 3302 3110 2224 110 0 0 chr1 192035155 192035447 -50628906 - AluSx SINE Alu -19 293 2 246 220 121 33 chr1 192035483 192035574 -50628779 + MLT1K LTR MaLR 27 125 -463 615 353 17 45 chr1 192035574 192035625 -50628728 - L2 LINE L2 -1139 2175 2124 1925 126 164 19 chr1 192035625 192035943 -50628410 - THE1B LTR MaLR 0 364 1 615 353 17 45 chr1 192035943 192036293 -50628060 - L2 LINE L2 -1190 2124 1785 5581 124 13 14 chr1 192036299 192037713 -50626640 - L1PA13 LINE L1 0 6163 4708 10927 176 11 29 chr1 192037713 192038194 -50626159 + L1P LINE L1 2550 3038 -3108 2481 51 0 0 chr1 192038194 192038490 -50625863 + AluY SINE Alu 1 296 -15 10927 176 11 29 chr1 192038490 192039151 -50625202 + L1P LINE L1 3038 3709 -2437 2012 125 0 74 chr1 192039151 192039288 -50625065 + AluSx SINE Alu 2 148 -164 1919 141 7 30 chr1 192039288 192039592 -50624761 + AluSx SINE Alu 1 297 -15 225 0 0 0 chr1 192039592 192039617 -50624736 + (TA)n Simple_repeat Simple_repeat 2 26 0 2012 125 0 74 chr1 192039617 192039814 -50624539 + AluSx SINE Alu 146 312 0 10927 176 11 29 chr1 192039814 192040444 -50623909 + L1P LINE L1 3709 4349 -1797 2018 154 0 3 chr1 192040444 192040755 -50623598 + AluSx SINE Alu 1 310 -2 10927 176 11 29 chr1 192040755 192041119 -50623234 + L1P LINE L1 4349 4651 -1495 1779 149 0 7 chr1 192041119 192041388 -50622965 + AluSx SINE Alu 36 302 -10 10927 176 11 29 chr1 192041388 192041473 -50622880 + L1P LINE L1 4651 4736 -1410 1622 189 10 10 chr1 192041615 192041922 -50622431 + AluJb SINE Alu 1 307 -5 2035 117 50 7 chr1 192042484 192042783 -50621570 - AluSq SINE Alu -1 312 1 22 0 0 0 chr1 192043038 192043060 -50621293 + AT_rich Low_complexity Low_complexity 1 22 0 189 293 0 35 chr1 192043705 192043763 -50620590 + L2 LINE L2 3000 3055 -217 868 144 0 0 chr1 192043784 192043902 -50620451 + FLAM_C SINE Alu 1 118 -15 2290 85 0 25 chr1 192043934 192044253 -50620100 + AluY SINE Alu 1 311 0 6265 119 9 6 chr1 192044254 192045156 -50619197 - HSMAR2 DNA Mariner 0 1302 398 225 254 42 14 chr1 192047074 192047145 -50617208 + L1ME LINE L1 5794 5866 -255 1469 197 60 4 chr1 192047859 192048128 -50616225 - AluJb SINE Alu -27 285 2 284 200 14 0 chr1 192048286 192048356 -50615997 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 2154 120 0 37 chr1 192050321 192050645 -50613708 - AluSx SINE Alu 0 312 1 2167 126 10 3 chr1 192051017 192051327 -50613026 + AluSx SINE Alu 1 312 0 310 269 31 39 chr1 192052111 192052241 -50612112 + MIR SINE MIR 123 251 -11 1630 188 35 0 chr1 192052311 192052598 -50611755 + AluJb SINE Alu 1 297 -15 390 301 102 21 chr1 192053184 192053420 -50610933 + MIR SINE MIR 2 256 -6 2170 113 13 0 chr1 192054091 192054392 -50609961 + AluSq SINE Alu 1 305 -8 1179 124 0 11 chr1 192054653 192054830 -50609523 + AluSg/x SINE Alu 135 309 -1 337 289 11 0 chr1 192054982 192055072 -50609281 + GA-rich Low_complexity Low_complexity 2 92 0 302 287 32 30 chr1 192055103 192055229 -50609124 + MIR SINE MIR 30 150 -69 186 43 0 0 chr1 192055515 192055538 -50608815 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2196 96 0 3 chr1 192055541 192055833 -50608520 - AluSx SINE Alu -19 293 3 3723 135 44 41 chr1 192055879 192056510 -50607843 - MER51A LTR ERV1 -1 633 1 2075 110 0 17 chr1 192057400 192057700 -50606653 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr1 192058267 192058296 -50606057 + AT_rich Low_complexity Low_complexity 1 29 0 318 291 55 45 chr1 192058309 192058419 -50605934 - L2 LINE L2 0 3313 3203 2040 152 3 3 chr1 192058684 192058994 -50605359 - AluJb SINE Alu -2 310 1 999 239 0 0 chr1 192059014 192059202 -50605151 + MER5A DNA MER1_type 1 188 -1 292 330 20 10 chr1 192060092 192060192 -50604161 + L2 LINE L2 3212 3312 -1 1564 199 3 14 chr1 192060228 192060524 -50603829 - AluJo SINE Alu -19 293 1 368 329 110 0 chr1 192060671 192060817 -50603536 + MIR3 SINE MIR 33 194 -14 831 203 10 76 chr1 192061122 192061319 -50603034 + MER63A DNA MER1_type 27 210 0 22 0 0 0 chr1 192061336 192061358 -50602995 + AT_rich Low_complexity Low_complexity 1 22 0 534 298 66 5 chr1 192061605 192061855 -50602498 + L2 LINE L2 2775 3035 -237 2213 103 3 0 chr1 192062232 192062523 -50601830 + AluSp SINE Alu 5 296 -17 680 272 100 16 chr1 192062523 192062832 -50601521 + L1ME LINE L1 5390 5724 -446 1833 145 0 69 chr1 192063024 192063342 -50601011 - AluSx SINE Alu -16 296 1 2051 119 0 39 chr1 192063662 192063973 -50600380 + AluSx SINE Alu 1 299 -13 4004 163 35 30 chr1 192063982 192064419 -50599934 + L1MB7 LINE L1 5393 5837 -347 2295 110 7 0 chr1 192064419 192064727 -50599626 + AluSq SINE Alu 1 310 -3 4004 163 35 30 chr1 192064727 192065061 -50599292 + L1MB7 LINE L1 5837 6168 -16 2050 146 10 0 chr1 192065860 192066155 -50598198 + AluJb SINE Alu 1 298 -14 2057 116 77 41 chr1 192066160 192066522 -50597831 - THE1C LTR MaLR 0 375 1 2172 120 7 3 chr1 192067475 192067784 -50596569 - AluSx SINE Alu -2 310 1 2067 138 0 7 chr1 192068069 192068365 -50595988 - AluSx SINE Alu -18 294 1 205 189 19 57 chr1 192068404 192068457 -50595896 + L2 LINE L2 3263 3313 0 383 244 7 104 chr1 192068993 192069128 -50595225 - MIR SINE MIR -18 244 123 29 37 0 19 chr1 192069144 192069165 -50595188 + AT_rich Low_complexity Low_complexity 1 21 -32 5767 119 8 12 chr1 192069165 192070014 -50594339 + L1MA5A LINE L1 5448 6293 -4 29 37 0 19 chr1 192070014 192070046 -50594307 + AT_rich Low_complexity Low_complexity 21 53 0 268 341 93 8 chr1 192070048 192070177 -50594176 - MIR SINE MIR -121 141 2 2291 125 0 0 chr1 192070196 192070507 -50593846 - AluSx SINE Alu -1 311 1 191 355 51 36 chr1 192070704 192070842 -50593511 + L2 LINE L2 2945 3084 -188 1199 210 0 109 chr1 192120950 192121288 -50543065 - MER21B LTR ERV1 -550 313 13 210 106 43 43 chr1 192122248 192122295 -50542058 + C-rich Low_complexity Low_complexity 2 48 0 2113 138 7 0 chr1 192122561 192122866 -50541487 - AluSx SINE Alu -5 307 1 312 48 0 0 chr1 192123697 192123739 -50540614 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 414 157 186 0 chr1 192124759 192124860 -50539493 + FLAM_A SINE Alu 36 149 0 1675 150 34 27 chr1 192125283 192125576 -50538777 + LTR1B LTR ERV1 1 295 -531 232 345 65 18 chr1 192126552 192126830 -50537523 + L2 LINE L2 2597 2887 -427 449 285 117 29 chr1 192127432 192127706 -50536647 + L3 LINE CR1 1278 1575 -2 366 108 36 0 chr1 192128176 192128259 -50536094 + (TA)n Simple_repeat Simple_repeat 2 87 0 767 244 0 6 chr1 192128259 192128431 -50535922 - MSTB2 LTR MaLR -49 408 238 * 1475 202 72 29 chr1 192128426 192128772 -50535581 + MER21B LTR ERV1 501 861 -2 210 293 0 0 chr1 192129678 192129736 -50534617 + C-rich Low_complexity Low_complexity 4 61 0 24 67 0 0 chr1 192131631 192131676 -50532677 + AT_rich Low_complexity Low_complexity 1 45 0 306 125 0 0 chr1 192132282 192132330 -50532023 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 388 207 138 0 chr1 192132337 192132424 -50531929 + AluJ/FLAM SINE Alu 2 100 -202 213 178 0 0 chr1 192132434 192132479 -50531874 + G-rich Low_complexity Low_complexity 2 46 0 192 125 0 0 chr1 192132476 192132508 -50531845 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 * 29 0 0 0 chr1 192132519 192132548 -50531805 + AT_rich Low_complexity Low_complexity 1 29 0 632 220 58 31 chr1 192132630 192132765 -50531588 + MIR SINE MIR 36 179 -83 2563 74 0 0 chr1 192132765 192133074 -50531279 + AluY SINE Alu 1 309 -2 632 220 58 31 chr1 192133074 192133129 -50531224 + MIR SINE MIR 179 231 -31 614 195 144 6 chr1 192133134 192133308 -50531045 + MIR SINE MIR 65 262 0 742 199 104 12 chr1 192133364 192133605 -50530748 - MER20B DNA MER1_type -6 777 515 281 286 27 77 chr1 192134160 192134253 -50530100 + L1MC4a LINE L1 5703 5799 -2009 1923 137 7 23 chr1 192134253 192134415 -50529938 - AluSx SINE Alu -17 295 139 2254 75 0 3 chr1 192134415 192134707 -50529646 - AluY SINE Alu -20 291 1 1923 137 7 23 chr1 192134707 192134844 -50529509 - AluSx SINE Alu -173 139 1 281 286 27 77 chr1 192134844 192135009 -50529344 + L1MC4a LINE L1 5799 5948 -1860 240 111 0 0 chr1 192136290 192136326 -50528027 + (A)n Simple_repeat Simple_repeat 1 36 0 1359 109 5 0 chr1 192136326 192136510 -50527843 + AluSx SINE Alu 1 185 -127 405 0 0 0 chr1 192136510 192136555 -50527798 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 774 215 221 45 chr1 192136824 192137177 -50527176 + MSTB2 LTR MaLR 15 429 -28 216 274 0 16 chr1 192138795 192138857 -50525496 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1807 192 14 14 chr1 192139341 192139706 -50524647 + MLT1A1 LTR MaLR 1 365 0 2114 144 0 0 chr1 192140421 192140719 -50523634 + AluSx SINE Alu 1 298 -14 567 127 0 0 chr1 192141348 192141427 -50522926 + AluSg/x SINE Alu 211 289 -21 2177 102 24 27 chr1 192143083 192143334 -50521019 - MER47A DNA MER2_type -1958 365 114 2328 76 0 3 chr1 192143334 192143622 -50520731 + AluSg SINE Alu 1 287 -23 2177 102 24 27 chr1 192143622 192143704 -50520649 - MER47A DNA MER2_type -2209 114 33 243 284 25 12 chr1 192146995 192147076 -50517277 + GA-rich Low_complexity Low_complexity 5 86 0 630 231 0 8 chr1 192147807 192147937 -50516416 + FLAM_A SINE Alu 1 129 -4 223 119 0 68 chr1 192148538 192148597 -50515756 + (TGG)n Simple_repeat Simple_repeat 2 56 0 365 260 31 8 chr1 192148841 192148968 -50515385 - L1ME4a LINE L1 -2 6119 5990 575 261 113 61 chr1 192149270 192149596 -50514757 + MLT1K LTR MaLR 244 586 -2 294 291 67 75 chr1 192149597 192149851 -50514502 - L1ME4a LINE L1 -474 5647 5396 297 184 0 0 chr1 192149950 192149999 -50514354 - L1MB3 LINE L1 -52 6131 6083 580 81 139 0 chr1 192150006 192150092 -50514261 - AluJb SINE Alu -7 305 208 317 95 0 0 chr1 192150107 192150149 -50514204 - FLAM_A SINE Alu -25 108 67 648 129 0 0 chr1 192150149 192150242 -50514111 - AluJ/FLAM SINE Alu -218 94 2 2185 116 7 7 chr1 192150479 192150789 -50513564 + AluSx SINE Alu 1 310 -2 204 193 18 18 chr1 192150809 192150866 -50513487 + T-rich Low_complexity Low_complexity 3 59 0 698 235 30 6 chr1 192150980 192151146 -50513207 + MER20B DNA MER1_type 34 203 -580 1490 146 21 107 chr1 192151419 192151747 -50512606 + AluYb8 SINE Alu 1 300 -18 1013 147 27 0 chr1 192151867 192152017 -50512336 - AluJb SINE Alu -10 302 149 1853 116 58 4 chr1 192152258 192152534 -50511819 - AluSp SINE Alu -22 291 1 561 114 13 0 chr1 192152934 192153013 -50511340 - AluS SINE Alu -229 83 4 997 256 86 30 chr1 192153046 192153453 -50510900 + L2 LINE L2 2879 3308 -5 2123 104 3 29 chr1 192153779 192154086 -50510267 - AluSq SINE Alu -14 299 1 792 243 76 9 chr1 192154194 192154404 -50509949 - MER58A DNA MER1_type 0 224 1 530 222 105 19 chr1 192154655 192154817 -50509536 + MER104 DNA MER2_type 5 180 0 2302 114 3 0 chr1 192156348 192156655 -50507698 - AluSp SINE Alu -5 308 1 1547 190 13 13 chr1 192157124 192157434 -50506919 - AluSx SINE Alu -2 310 1 435 283 114 71 chr1 192158046 192158512 -50505841 + L2 LINE L2 2290 2775 -539 441 337 125 21 chr1 192158603 192158891 -50505462 + L2 LINE L2 2955 3272 0 1008 102 0 0 chr1 192161033 192161343 -50503010 + AluSx SINE Alu 1 310 0 1472 159 84 68 chr1 192161788 192162084 -50502269 + AluJo SINE Alu 1 301 -1 28172 28 0 1 chr1 192162284 192166405 -50497948 + L1PA4 LINE L1 2079 6198 0 971 112 0 0 chr1 192166525 192166650 -50497703 + AluSq/x SINE Alu 1 125 -188 942 128 0 0 chr1 192166752 192166924 -50497429 + (G)n Simple_repeat Simple_repeat 1 172 0 2289 125 0 0 chr1 192167203 192167515 -50496838 + AluSx SINE Alu 1 312 0 27 29 0 0 chr1 192167556 192167590 -50496763 + AT_rich Low_complexity Low_complexity 1 34 0 541 265 160 50 chr1 192167764 192168193 -50496160 + MLT1J LTR MaLR 1 486 -8 363 260 198 51 chr1 192168200 192168377 -50495976 - MIR SINE MIR -59 203 1 2246 124 0 6 chr1 192168463 192168777 -50495576 + AluSx SINE Alu 1 312 0 1629 176 0 31 chr1 192169606 192169895 -50494458 - AluJb SINE Alu -15 297 18 16349 59 2 0 chr1 192170438 192172448 -50491905 + L1P LINE L1 3 2016 -4130 345 62 0 0 chr1 192172577 192172625 -50491728 + (TG)n Simple_repeat Simple_repeat 2 49 0 467 141 0 0 chr1 192172860 192172931 -50491422 + MADE1 DNA Mariner 1 71 -9 533 360 129 18 chr1 192172965 192173523 -50490830 + L2 LINE L2 2287 2906 -408 799 252 49 9 chr1 192173602 192173828 -50490525 - LTR16B LTR ERVL -2 462 228 2109 107 0 0 chr1 192174121 192174392 -50489961 - AluSx SINE Alu -41 271 1 3311 179 33 93 chr1 192174433 192175331 -50489022 + L1MA9 LINE L1 5449 6292 -20 574 290 48 48 chr1 192175950 192176240 -50488113 - L2 LINE L2 -458 2856 2567 398 224 82 41 chr1 192177938 192178085 -50486268 + L1ME4a LINE L1 5966 6118 -3 22 106 0 0 chr1 192178111 192178196 -50486157 + AT_rich Low_complexity Low_complexity 1 85 0 2202 88 3 24 chr1 192178250 192178546 -50485807 - AluSq SINE Alu -23 290 1 1588 139 13 63 chr1 192178696 192178999 -50485354 + MLT1B LTR MaLR 1 288 -102 1838 150 13 19 chr1 192179849 192180163 -50484190 + AluJo SINE Alu 1 312 0 358 348 37 12 chr1 192180939 192181103 -50483250 + MIR3 SINE MIR 40 207 -1 603 264 50 31 chr1 192181209 192181467 -50482886 + L1MC/D LINE L1 5336 5598 -2210 4117 125 52 43 chr1 192181472 192181748 -50482605 - Tigger3(Golem) DNA MER2_type 0 3029 2757 2278 95 0 16 chr1 192181748 192182054 -50482299 + AluSx SINE Alu 1 301 -11 4117 125 52 43 chr1 192182054 192182442 -50481911 - Tigger3(Golem) DNA MER2_type -272 2757 2355 1639 181 7 19 chr1 192182442 192182752 -50481601 - AluJo SINE Alu -6 306 1 4117 125 52 43 chr1 192182752 192182853 -50481500 - Tigger3(Golem) DNA MER2_type -674 2355 2256 2381 68 14 0 chr1 192183189 192183482 -50480871 - AluSp SINE Alu -16 297 1 382 233 10 48 chr1 192183529 192183632 -50480721 + MIR SINE MIR 1 99 -163 748 174 0 36 chr1 192184614 192184752 -50479601 + FLAM_A SINE Alu 1 133 0 22 0 0 0 chr1 192187456 192187478 -50476875 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr1 192189085 192189136 -50475217 + AT_rich Low_complexity Low_complexity 1 51 0 2160 133 3 0 chr1 192189647 192189948 -50474405 - AluSx SINE Alu -10 302 1 22 0 0 0 chr1 192191292 192191314 -50473039 + AT_rich Low_complexity Low_complexity 1 22 0 37 39 0 0 chr1 192192132 192192183 -50472170 + AT_rich Low_complexity Low_complexity 1 51 0 749 140 0 91 chr1 192192189 192192332 -50472021 - FRAM SINE Alu -19 157 28 1477 139 12 40 chr1 192192952 192193204 -50471149 + AluJo SINE Alu 55 299 -13 285 29 0 0 chr1 192193343 192193377 -50470976 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 195 330 46 40 chr1 192193472 192193645 -50470708 - L2 LINE L2 -185 3087 2914 834 290 113 61 chr1 192193761 192194354 -50469999 - L2 LINE L2 -534 2780 2157 530 319 35 31 chr1 192194497 192194723 -50469630 - MIR SINE MIR -21 241 15 21 0 0 0 chr1 192195465 192195486 -50468867 + AT_rich Low_complexity Low_complexity 1 21 0 2103 209 81 42 chr1 192196068 192196452 -50467901 + MLT1F LTR MaLR 1 412 -130 2338 107 0 0 chr1 192196452 192196750 -50467603 - AluSx SINE Alu -14 298 1 2103 209 81 42 chr1 192196750 192196887 -50467466 + MLT1F LTR MaLR 412 542 0 437 291 125 53 chr1 192197203 192197329 -50467024 + L2 LINE L2 2570 2685 -587 953 150 0 0 chr1 192197329 192197462 -50466891 - FLAM_C SINE Alu 0 133 1 437 291 125 53 chr1 192197462 192197763 -50466590 + L2 LINE L2 2685 3032 -240 226 295 39 0 chr1 192197953 192198031 -50466322 + MER91A DNA MER1_type 28 108 -88 269 315 130 11 chr1 192198098 192198190 -50466163 + L2 LINE L2 3154 3256 -16 371 244 22 0 chr1 192198683 192198773 -50465580 - MER69 DNA AcHobo 0 2526 2435 319 202 358 0 chr1 192198794 192198903 -50465450 - MER69 DNA AcHobo -979 247 100 604 286 139 23 chr1 192199237 192199792 -50464561 - L2 LINE L2 -17 3296 2623 427 302 138 6 chr1 192200139 192200298 -50464055 + MIR SINE MIR 31 210 -52 1468 108 9 9 chr1 192201695 192201907 -50462446 + AluJb SINE Alu 85 296 -16 228 236 73 0 chr1 192202549 192202604 -50461749 - MIR3 SINE MIR -22 186 128 227 317 120 7 chr1 192202690 192202832 -50461521 + L2 LINE L2 2941 3098 -174 1963 127 29 0 chr1 192204613 192204924 -50459429 + AluSx SINE Alu 1 319 0 557 341 44 60 chr1 192204981 192205394 -50458959 + L2 LINE L2 2866 3271 -1 2309 109 0 0 chr1 192205542 192205853 -50458500 + AluSx SINE Alu 1 311 -1 674 281 112 32 chr1 192205875 192206188 -50458165 + L2 LINE L2 2948 3285 -28 222 62 0 0 chr1 192206188 192206220 -50458133 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1638 150 11 15 chr1 192206253 192206520 -50457833 + AluJo SINE Alu 30 295 -17 834 172 0 0 chr1 192206527 192206661 -50457692 + AluJo SINE Alu 1 134 -178 513 234 78 42 chr1 192207476 192207643 -50456710 + MIR SINE MIR 42 214 -48 197 341 121 16 chr1 192209856 192210220 -50454133 + L2 LINE L2 2257 2658 -656 446 282 141 26 chr1 192210799 192211033 -50453320 + MIR SINE MIR 2 262 0 1826 164 37 3 chr1 192211194 192211493 -50452860 - AluJo SINE Alu -3 309 1 699 263 91 77 chr1 192212267 192212685 -50451668 + L2 LINE L2 2200 2623 -691 423 252 114 0 chr1 192212732 192212863 -50451490 - MIR SINE MIR -1 261 116 495 254 156 5 chr1 192213207 192213293 -50451060 - MER46A DNA MER2_type -2495 236 164 189 0 0 0 chr1 192213293 192213314 -50451039 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2034 126 0 0 chr1 192213320 192213598 -50450755 - AluSx SINE Alu -34 278 1 495 254 156 5 chr1 192213598 192213709 -50450644 - MER46A DNA MER2_type -2571 160 1 548 203 119 0 chr1 192215721 192215839 -50448514 + FLAM_A SINE Alu 1 132 -1 23 33 0 0 chr1 192217711 192217741 -50446612 + AT_rich Low_complexity Low_complexity 1 30 0 2475 111 34 3 chr1 192219530 192219880 -50444473 - MER46B DNA MER2_type 0 236 1 287 253 44 11 chr1 192220162 192220253 -50444100 + MIR SINE MIR 128 221 -41 250 182 127 0 chr1 192220703 192220758 -50443595 + L2 LINE L2 3251 3312 -1 1583 256 162 14 chr1 192221257 192221764 -50442589 + MLT1G1 LTR MaLR 1 582 -13 245 173 135 19 chr1 192222401 192222453 -50441900 + MIR3 SINE MIR 144 201 -7 253 254 16 16 chr1 192224054 192224117 -50440236 + L2 LINE L2 3207 3269 -3 638 201 170 13 chr1 192224213 192224372 -50439981 + MER5A DNA MER1_type 4 187 -2 2332 98 0 0 chr1 192224408 192224704 -50439649 + AluSx SINE Alu 1 296 -16 1966 149 0 13 chr1 192224717 192225018 -50439335 - AluSx SINE Alu -15 297 1 980 301 110 10 chr1 192225444 192225836 -50438517 + L2 LINE L2 2431 2861 -453 234 0 0 0 chr1 192225839 192225865 -50438488 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1982 126 0 4 chr1 192225876 192226153 -50438200 - AluSx SINE Alu -36 276 1 1027 187 6 0 chr1 192226375 192226546 -50437807 + FRAM SINE Alu 1 167 -9 279 0 0 0 chr1 192226574 192226605 -50437748 + (CA)n Simple_repeat Simple_repeat 2 32 0 552 312 51 66 chr1 192226885 192227295 -50437058 - L2 LINE L2 -351 2963 2560 226 296 25 12 chr1 192227317 192227398 -50436955 + HsTC2 DNA Tc2 1 82 -1816 * 276 271 24 0 chr1 192227387 192227472 -50436881 + HsTC2 DNA Tc2 1812 1898 0 231 61 0 0 chr1 192227612 192227645 -50436708 + (A)n Simple_repeat Simple_repeat 1 33 0 2348 96 0 3 chr1 192227652 192227964 -50436389 + AluY SINE Alu 1 311 0 652 181 103 0 chr1 192228027 192228143 -50436210 - FLAM_A SINE Alu -5 128 1 705 173 8 23 chr1 192228505 192228638 -50435715 - FLAM_A SINE Alu -1 132 2 1640 197 38 12 chr1 192228874 192229219 -50435134 + MLT1A1 LTR MaLR 1 354 -11 2134 109 0 0 chr1 192229284 192229568 -50434785 + AluSx SINE Alu 1 284 -28 243 0 0 0 chr1 192229572 192229599 -50434754 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4124 130 44 0 chr1 192229795 192230410 -50433943 - L1PA16 LINE L1 -9 6157 5516 224 375 12 0 chr1 192231776 192231856 -50432497 - MER91A DNA MER1_type 0 196 116 281 314 76 19 chr1 192231884 192231989 -50432364 - MER91A DNA MER1_type -30 166 56 2074 92 62 20 chr1 192233163 192233455 -50430898 + AluY SINE Alu 1 304 -7 201 94 0 0 chr1 192233596 192233628 -50430725 + (TC)n Simple_repeat Simple_repeat 1 32 0 186 71 0 0 chr1 192234010 192234038 -50430315 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 354 204 64 64 chr1 192234040 192234105 -50430248 - Charlie7 DNA MER1_type -41 2571 2507 1070 215 80 43 chr1 192234105 192234431 -50429922 - MER46C DNA MER2_type 0 338 1 354 204 64 64 chr1 192234431 192234522 -50429831 - Charlie7 DNA MER1_type -104 2508 2415 270 188 109 109 chr1 192235717 192235845 -50428508 + AluSc SINE Alu 7 134 -165 23 0 0 0 chr1 192235987 192236010 -50428343 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 192236047 192236075 -50428278 + AT_rich Low_complexity Low_complexity 1 28 0 2275 100 0 19 chr1 192237039 192237348 -50427005 - AluSg SINE Alu -7 303 1 846 177 140 6 chr1 192238403 192238567 -50425786 + AluJo SINE Alu 1 186 -126 1086 96 0 0 chr1 192238571 192238706 -50425647 + AluSq/x SINE Alu 1 135 -178 2080 109 3 14 chr1 192238706 192238999 -50425354 + AluSx SINE Alu 2 291 -21 630 335 71 54 chr1 192239059 192239850 -50424503 + L2 LINE L2 2398 3255 -17 195 42 0 0 chr1 192239850 192239874 -50424479 + (TTGG)n Simple_repeat Simple_repeat 1 24 0 630 335 71 54 chr1 192239874 192239893 -50424460 + L2 LINE L2 3255 3272 0 848 232 64 17 chr1 192239922 192240155 -50424198 + MIR SINE MIR 19 262 0 2089 129 16 0 chr1 192240217 192240520 -50423833 + AluSx SINE Alu 1 308 -4 204 125 0 0 chr1 192241218 192241250 -50423103 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 344 304 123 15 chr1 192241557 192241761 -50422592 - MIR SINE MIR -7 255 30 476 169 11 0 chr1 192242375 192242464 -50421889 + AluSg/x SINE Alu 205 294 -16 1010 162 198 36 chr1 192243205 192243445 -50420908 - Charlie5 DNA MER1_type -4 2620 2310 2359 104 0 3 chr1 192243445 192243754 -50420599 - AluSx SINE Alu -4 308 1 1010 162 198 36 chr1 192243754 192243846 -50420507 - Charlie5 DNA MER1_type -314 2310 2234 317 291 0 0 chr1 192243856 192243935 -50420418 - Charlie5 DNA MER1_type -2507 105 27 978 263 126 16 chr1 192244174 192244705 -50419648 - MLT2E LTR ERVL -4 624 2 218 290 29 14 chr1 192245007 192245076 -50419277 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 455 263 206 62 chr1 192245076 192245233 -50419120 + L2 LINE L2 2831 2964 -349 2260 82 7 3 chr1 192245233 192245525 -50418828 - AluY SINE Alu -18 293 1 455 263 206 62 chr1 192245525 192245789 -50418564 + L2 LINE L2 2964 3313 0 1966 120 4 4 chr1 192246230 192246506 -50417847 + AluSx SINE Alu 1 276 -36 216 0 0 0 chr1 192246510 192246534 -50417819 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2205 119 3 0 chr1 192246614 192246917 -50417436 - AluSx SINE Alu -8 304 1 1715 140 25 4 chr1 192247150 192247429 -50416924 + L1MB3 LINE L1 5889 6173 -10 1978 188 33 63 chr1 192247518 192248039 -50416314 + MLT1D LTR MaLR 1 505 0 2159 114 0 3 chr1 192248639 192248929 -50415424 + AluSx SINE Alu 1 289 -23 1624 159 21 57 chr1 192249272 192249555 -50414798 + AluJo SINE Alu 1 273 -39 306 73 0 0 chr1 192249555 192249596 -50414757 + (ATG)n Simple_repeat Simple_repeat 2 42 0 622 358 49 32 chr1 192249637 192250045 -50414308 + L2 LINE L2 2553 2967 -347 232 266 16 16 chr1 192250099 192250163 -50414190 + MIR SINE MIR 174 237 -25 2137 80 0 4 chr1 192250164 192250440 -50413913 - AluY SINE Alu -1 310 36 22 0 0 0 chr1 192250444 192250466 -50413887 + AT_rich Low_complexity Low_complexity 1 22 0 249 333 133 8 chr1 192250645 192250765 -50413588 + L2 LINE L2 3134 3268 -4 344 264 74 62 chr1 192251036 192251298 -50413055 - MLT1H LTR MaLR -246 303 5 242 304 94 29 chr1 192251782 192251920 -50412433 + L2 LINE L2 3167 3313 0 2453 97 0 0 chr1 192252045 192252355 -50411998 - AluSg SINE Alu 0 310 1 259 306 42 0 chr1 192252541 192252613 -50411740 + L2 LINE L2 2979 3053 -219 786 225 9 68 chr1 192252987 192253209 -50411144 - MIR SINE MIR -44 218 10 1158 222 47 30 chr1 192253405 192253858 -50410495 + MLT1B LTR MaLR 1 390 0 1306 101 0 0 chr1 192254539 192254707 -50409646 + AluSp SINE Alu 134 301 -12 23 0 0 0 chr1 192254936 192254959 -50409394 + AT_rich Low_complexity Low_complexity 1 23 0 259 210 20 50 chr1 192255758 192255858 -50408495 - L1MEc LINE L1 -4086 2493 2358 22 0 0 0 chr1 192256095 192256117 -50408236 + AT_rich Low_complexity Low_complexity 1 22 0 731 230 32 48 chr1 192256898 192257150 -50407203 + L1MEc LINE L1 1999 2246 -4150 26 30 0 0 chr1 192257231 192257264 -50407089 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr1 192257595 192257618 -50406735 + AT_rich Low_complexity Low_complexity 1 23 0 972 231 123 109 chr1 192258311 192258772 -50405581 + L2 LINE L2 2554 3040 -273 2291 101 0 7 chr1 192258772 192259080 -50405273 + AluY SINE Alu 1 306 -5 972 231 123 109 chr1 192259080 192259348 -50405005 + L2 LINE L2 3040 3303 -10 1720 163 13 3 chr1 192259349 192259650 -50404703 - AluJo SINE Alu -8 304 1 1469 207 108 89 chr1 192259790 192260307 -50404046 + MLT1F LTR MaLR 13 539 -3 194 382 32 25 chr1 192260324 192260481 -50403872 - L2 LINE L2 -666 2648 2491 229 306 177 43 chr1 192260726 192260958 -50403395 + L2 LINE L2 3009 3271 -1 2142 64 0 8 chr1 192261400 192261665 -50402688 - AluY SINE Alu -7 304 42 1879 148 3 36 chr1 192261927 192262231 -50402122 + AluSx SINE Alu 1 294 -18 226 269 15 0 chr1 192262269 192262336 -50402017 + (TA)n Simple_repeat Simple_repeat 1 68 0 1964 161 0 3 chr1 192262375 192262673 -50401680 + AluJb SINE Alu 1 297 -15 1475 202 72 29 chr1 192263800 192264146 -50400207 - MER21B LTR ERV1 -2 861 501 767 244 0 6 chr1 192264141 192264313 -50400040 + MSTB2 LTR MaLR 238 408 -49 * 362 102 34 11 chr1 192264313 192264401 -50399952 + (TA)n Simple_repeat Simple_repeat 2 91 0 2595 179 13 78 chr1 192264416 192264953 -50399400 - MER21B LTR ERV1 -347 516 15 602 37 12 0 chr1 192267160 192267241 -50397112 + (GA)n Simple_repeat Simple_repeat 1 82 0 614 309 34 30 chr1 192267275 192267537 -50396816 - L1MC4a LINE L1 -1914 5894 5632 560 207 9 9 chr1 192267811 192267954 -50396399 + FLAM_A SINE Alu 1 143 0 185 333 153 0 chr1 192268092 192268242 -50396111 - MIR SINE MIR -43 219 47 2149 98 76 9 chr1 192269179 192269507 -50394846 - THE1C LTR MaLR 0 375 26 2120 130 0 7 chr1 192269507 192269800 -50394553 + AluSx SINE Alu 1 291 -21 236 36 0 0 chr1 192269810 192269838 -50394515 - THE1C LTR MaLR -336 39 12 185 260 0 91 chr1 192269919 192269996 -50394357 - L2 LINE L2 -202 3070 3001 608 239 49 58 chr1 192270010 192270259 -50394094 - MIR SINE MIR -2 260 7 206 250 0 83 chr1 192270371 192270479 -50393874 + G-rich Low_complexity Low_complexity 2 100 0 2826 133 32 11 chr1 192270542 192271014 -50393339 - L1MB5 LINE L1 -7 6167 5686 232 289 113 49 chr1 192271500 192271610 -50392743 + L2 LINE L2 2927 3049 -223 2727 90 0 3 chr1 192271610 192271966 -50392387 - THE1A LTR MaLR 0 355 1 232 289 113 49 chr1 192271966 192271997 -50392356 + L2 LINE L2 3049 3077 -195 227 289 105 73 chr1 192272163 192272602 -50391751 - L2 LINE L2 -1228 2086 1634 414 291 80 23 chr1 192272748 192272923 -50391430 + MLT1H LTR MaLR 94 278 -271 222 62 0 0 chr1 192272985 192273017 -50391336 + (CAGCC)n Simple_repeat Simple_repeat 2 33 0 1977 129 3 3 chr1 192273482 192273768 -50390585 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr1 192273773 192273798 -50390555 + AT_rich Low_complexity Low_complexity 1 25 0 1571 191 19 35 chr1 192274243 192274360 -50389993 + AluJo SINE Alu 3 120 -192 2530 70 0 0 chr1 192274360 192274658 -50389695 - AluSc SINE Alu -9 300 3 1571 191 19 35 chr1 192274658 192274839 -50389514 + AluJo SINE Alu 120 298 -14 2131 152 0 0 chr1 192274839 192275149 -50389204 + AluSx SINE Alu 1 310 -2 1571 191 19 35 chr1 192275149 192275163 -50389190 + AluJo SINE Alu 298 311 -1 1317 43 0 22 chr1 192275169 192275353 -50389000 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 534 143 0 0 chr1 192275355 192275446 -50388907 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 21 0 0 0 chr1 192275469 192275490 -50388863 + AT_rich Low_complexity Low_complexity 1 21 0 2222 111 0 0 chr1 192275494 192275774 -50388579 + AluSx SINE Alu 1 280 -32 1103 25 13 19 chr1 192275775 192275932 -50388421 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 368 160 27 0 chr1 192275941 192276016 -50388337 + GA-rich Low_complexity Low_complexity 3 79 0 388 207 138 0 chr1 192276023 192276110 -50388243 + AluJ/FLAM SINE Alu 2 100 -202 279 133 0 0 chr1 192276120 192276165 -50388188 + (GGGGA)n Simple_repeat Simple_repeat 2 46 0 192 125 0 0 chr1 192276162 192276194 -50388159 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 * 29 0 0 0 chr1 192276205 192276234 -50388119 + AT_rich Low_complexity Low_complexity 1 29 0 544 207 74 7 chr1 192276316 192276451 -50387902 + MIR SINE MIR 36 179 -83 2362 103 0 0 chr1 192276451 192276761 -50387592 + AluY SINE Alu 1 310 -1 2891 148 12 65 chr1 192276877 192277439 -50386914 + L1MC1 LINE L1 5772 6304 -29 2559 81 0 3 chr1 192277439 192277748 -50386605 + AluSx SINE Alu 1 308 -4 2891 148 12 65 chr1 192277748 192277767 -50386586 + L1MC1 LINE L1 6304 6322 -11 2376 113 0 0 chr1 192277768 192278079 -50386274 + AluSx SINE Alu 1 311 -1 670 219 0 0 chr1 192278216 192278339 -50386014 + FLAM_A SINE Alu 1 123 -10 402 319 91 13 chr1 192279650 192279882 -50384471 - MIR SINE MIR -1 261 12 805 165 0 0 chr1 192279994 192280115 -50384238 + FLAM_C SINE Alu 1 121 -22 239 271 94 31 chr1 192280210 192280306 -50384047 - MIR SINE MIR -82 126 23 248 287 93 23 chr1 192280419 192280548 -50383805 + MIR SINE MIR 125 262 0 23 0 0 0 chr1 192280791 192280814 -50383539 + AT_rich Low_complexity Low_complexity 1 23 0 461 190 0 0 chr1 192282383 192282462 -50381891 + AluJb SINE Alu 2 80 -232 850 119 62 189 chr1 192282609 192282853 -50381500 + AluJb SINE Alu 89 301 -11 327 234 0 0 chr1 192283117 192283181 -50381172 - MER103 DNA DNA -101 65 2 23 33 0 0 chr1 192283390 192283420 -50380933 + AT_rich Low_complexity Low_complexity 1 30 0 2317 103 0 0 chr1 192284041 192284341 -50380012 - AluSx SINE Alu -11 301 2 200 188 0 0 chr1 192284553 192284585 -50379768 + (ATTG)n Simple_repeat Simple_repeat 3 34 0 1677 131 35 4 chr1 192284966 192285226 -50379127 - AluY SINE Alu -16 295 28 2333 122 0 0 chr1 192285414 192285725 -50378628 - AluSx SINE Alu -1 311 1 191 301 0 12 chr1 192286886 192286969 -50377384 + L2 LINE L2 2764 2845 -469 31 0 0 0 chr1 192287346 192287377 -50376976 + AT_rich Low_complexity Low_complexity 1 31 0 773 186 36 4 chr1 192287567 192287782 -50376571 - Tigger7 DNA MER2_type -240 310 1 396 126 11 81 chr1 192287782 192287867 -50376486 + MLT1I LTR MaLR 313 391 -18 346 268 31 8 chr1 192288737 192288864 -50375489 - L1ME4a LINE L1 -2 6119 5990 575 261 113 61 chr1 192289166 192289492 -50374861 + MLT1K LTR MaLR 244 586 -2 294 291 67 75 chr1 192289493 192289747 -50374606 - L1ME4a LINE L1 -474 5647 5396 297 184 0 0 chr1 192289846 192289895 -50374458 - L1MB3 LINE L1 -52 6131 6083 580 81 139 0 chr1 192289902 192289988 -50374365 - AluJb SINE Alu -7 305 208 317 95 0 0 chr1 192290003 192290045 -50374308 - FLAM_A SINE Alu -25 108 67 642 130 0 0 chr1 192290045 192290137 -50374216 - AluJ/FLAM SINE Alu -218 94 3 26 57 0 0 chr1 192290217 192290252 -50374101 + AT_rich Low_complexity Low_complexity 1 35 0 32 100 0 0 chr1 192290335 192290375 -50373978 + AT_rich Low_complexity Low_complexity 1 40 0 245 274 5 75 chr1 192290478 192290664 -50373689 + T-rich Low_complexity Low_complexity 4 176 0 30 27 0 0 chr1 192292897 192292934 -50371419 + AT_rich Low_complexity Low_complexity 1 37 0 563 257 75 43 chr1 192296118 192296371 -50367982 - MIR SINE MIR 0 262 2 461 206 196 0 chr1 192296558 192296660 -50367693 + Charlie2 DNA MER1_type 27 148 -2634 1267 198 142 78 chr1 192296715 192297058 -50367295 + Charlie2 DNA MER1_type 2230 2550 -312 1973 135 11 0 chr1 192297058 192297392 -50366961 - AluSp SINE Alu 0 337 1 1267 198 142 78 chr1 192297392 192297473 -50366880 + Charlie2 DNA MER1_type 2550 2624 -238 666 197 191 6 chr1 192297473 192297587 -50366766 - MER20 DNA MER1_type -4 215 123 252 0 0 0 chr1 192297587 192297615 -50366738 + (CA)n Simple_repeat Simple_repeat 1 28 0 666 197 191 6 chr1 192297615 192297678 -50366675 - MER20 DNA MER1_type -96 123 5 1267 198 142 78 chr1 192297678 192297781 -50366572 + Charlie2 DNA MER1_type 2624 2719 -143 1794 168 7 0 chr1 192297781 192298066 -50366287 - AluJb SINE Alu -22 290 4 1267 198 142 78 chr1 192298066 192298127 -50366226 + Charlie2 DNA MER1_type 2719 2859 -3 1693 159 31 28 chr1 192298851 192299160 -50365193 - AluJo SINE Alu 0 312 1 2165 111 4 0 chr1 192299438 192299772 -50364581 + AluSp SINE Alu 3 337 0 234 0 0 0 chr1 192299772 192299798 -50364555 + (GGAA)n Simple_repeat Simple_repeat 2 27 0 241 253 81 0 chr1 192300304 192300391 -50363962 - L2 LINE L2 0 3313 3220 625 204 0 0 chr1 192300561 192300674 -50363679 - AluJb SINE Alu -18 294 182 302 80 0 0 chr1 192300774 192300824 -50363529 + Alu SINE Alu 252 301 0 610 271 8 0 chr1 192301462 192301595 -50362758 + MER94 DNA DNA 1 134 0 439 265 151 50 chr1 192302125 192302267 -50362086 - MLT1K LTR MaLR -347 241 68 1726 247 94 24 chr1 192302267 192302821 -50361532 + MLT1E LTR MaLR 1 593 0 439 265 151 50 chr1 192302821 192302897 -50361456 - MLT1K LTR MaLR -520 68 1 2291 93 7 0 chr1 192302898 192303189 -50361164 + AluSg SINE Alu 1 293 -17 2385 86 3 3 chr1 192303370 192303673 -50360680 + AluSp SINE Alu 1 303 -10 2177 109 10 0 chr1 192303811 192304105 -50360248 + AluY SINE Alu 1 297 -14 1871 230 129 15 chr1 192304140 192304723 -50359630 - L1ME3 LINE L1 -55 6107 5459 513 84 0 0 chr1 192305052 192305123 -50359230 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2238 127 0 9 chr1 192305123 192305438 -50358915 - AluSx SINE Alu 0 312 1 278 294 149 47 chr1 192305876 192306513 -50357840 + L2 LINE L2 1562 2263 -1051 2270 112 26 0 chr1 192307034 192307338 -50357015 + AluSx SINE Alu 1 312 0 208 369 64 11 chr1 192308263 192308450 -50355903 - L2 LINE L2 -496 2818 2622 400 296 99 43 chr1 192309205 192309438 -50354915 - MLT1K LTR MaLR -20 568 323 2260 112 0 10 chr1 192310192 192310505 -50353848 + AluSq SINE Alu 1 310 -3 3634 192 54 50 chr1 192310917 192311517 -50352836 + MER21B LTR ERV1 1 608 -255 1653 152 55 7 chr1 192311517 192311806 -50352547 + AluJo SINE Alu 1 303 -9 3634 192 54 50 chr1 192311806 192312053 -50352300 + MER21B LTR ERV1 608 852 -11 1753 176 16 19 chr1 192312661 192312973 -50351380 + AluJo SINE Alu 1 311 -1 3028 177 46 19 chr1 192312973 192313556 -50350797 + L1MB5 LINE L1 5576 6174 0 2221 120 7 0 chr1 192313568 192313876 -50350477 + AluSg SINE Alu 1 310 0 2102 120 0 7 chr1 192313997 192314289 -50350064 - AluSx SINE Alu -22 290 1 259 231 26 13 chr1 192315351 192315429 -50348924 - MER103 DNA DNA -79 87 9 608 258 13 19 chr1 192315894 192316049 -50348304 + MIR SINE MIR 18 171 -91 212 162 0 0 chr1 192316599 192316636 -50347717 + L2 LINE L2 3277 3313 0 1502 240 49 0 chr1 192316733 192317058 -50347295 - MER58B DNA MER1_type 0 341 1 2414 89 3 0 chr1 192317075 192317379 -50346974 + AluSp SINE Alu 1 305 -8 440 271 131 27 chr1 192317406 192317627 -50346726 - L2 LINE L2 -11 3302 3059 2234 103 0 34 chr1 192317943 192318264 -50346089 + AluSx SINE Alu 1 310 -2 2276 106 0 0 chr1 192318268 192318560 -50345793 + AluSx SINE Alu 6 297 -15 1053 185 0 0 chr1 192318560 192318733 -50345620 + AluJo/FRAM SINE Alu 134 306 -6 40 37 0 0 chr1 192319064 192319118 -50345235 + AT_rich Low_complexity Low_complexity 1 54 0 599 255 97 18 chr1 192319342 192319768 -50344585 - LTR33 LTR ERVL -3 518 5 576 165 0 0 chr1 192319863 192319978 -50344375 + (TG)n Simple_repeat Simple_repeat 2 116 0 240 35 0 0 chr1 192320063 192320092 -50344261 + (GA)n Simple_repeat Simple_repeat 2 30 0 1806 137 33 4 chr1 192320093 192320364 -50343989 - AluSx SINE Alu -33 279 1 817 216 126 76 chr1 192320399 192320447 -50343906 - MLT1D LTR MaLR 0 467 423 1726 149 24 10 chr1 192320447 192320735 -50343618 + AluJb SINE Alu 18 309 -3 817 216 126 76 chr1 192320735 192321109 -50343244 - MLT1D LTR MaLR -44 423 17 1695 265 157 11 chr1 192321118 192321922 -50342431 + L1MC4 LINE L1 7119 8039 -3 506 285 28 34 chr1 192322193 192322372 -50341981 - MER5B DNA MER1_type 0 178 1 2313 92 0 3 chr1 192322442 192322736 -50341617 + AluSx SINE Alu 5 297 -15 2138 127 0 0 chr1 192322902 192323194 -50341159 + AluSx SINE Alu 1 292 -20 860 159 29 0 chr1 192323325 192323463 -50340890 + AluJb SINE Alu 154 295 -17 204 286 202 12 chr1 192323528 192323612 -50340741 + L2 LINE L2 3137 3236 -36 974 251 122 37 chr1 192324272 192324763 -50339590 + MLT1H LTR MaLR 14 546 -3 1950 123 0 66 chr1 192324765 192325083 -50339270 + AluSx SINE Alu 1 297 -15 1535 146 0 0 chr1 192325087 192325307 -50339046 + AluSg/x SINE Alu 84 303 -7 1790 82 0 0 chr1 192325310 192325530 -50338823 + AluSg/x SINE Alu 85 304 -8 865 115 0 0 chr1 192325537 192325650 -50338703 + AluSq/x SINE Alu 20 132 -181 270 0 0 0 chr1 192326552 192326582 -50337771 + (TG)n Simple_repeat Simple_repeat 2 31 0 211 276 0 35 chr1 192326719 192326777 -50337576 + L2 LINE L2 3190 3245 -27 182 245 66 57 chr1 192326985 192327091 -50337262 + MIR SINE MIR 31 137 -71 700 182 19 32 chr1 192327492 192327646 -50336707 + L1ME1 LINE L1 5787 5938 -228 2329 96 0 0 chr1 192327647 192327940 -50336413 + AluSx SINE Alu 1 293 -19 533 213 226 2 chr1 192328333 192328673 -50335680 - Charlie4a DNA MER1_type -1 507 20 1864 140 24 7 chr1 192329381 192329674 -50334679 - AluJb SINE Alu -14 298 1 2694 45 0 0 chr1 192329926 192330235 -50334118 - AluY SINE Alu -2 309 1 235 267 116 70 chr1 192330642 192330814 -50333539 + L2 LINE L2 1688 1867 -1447 185 0 40 0 chr1 192331042 192331067 -50333286 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 712 191 9 0 chr1 192331089 192331204 -50333149 - AluJb SINE Alu -111 201 86 447 86 0 0 chr1 192331321 192331379 -50332974 + Alu SINE Alu 2 59 -254 949 152 0 0 chr1 192331393 192331544 -50332809 + AluJb SINE Alu 156 306 -6 2007 113 7 3 chr1 192331578 192331869 -50332484 - AluSc SINE Alu -4 305 14 219 88 0 0 chr1 192331905 192331939 -50332414 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 720 171 18 0 chr1 192331939 192332050 -50332303 - FRAM SINE Alu -32 144 32 1552 191 88 116 chr1 192332094 192332208 -50332145 - Charlie2 DNA MER1_type -252 2610 2494 1531 161 10 64 chr1 192332208 192332468 -50331885 - AluJo SINE Alu -30 282 38 2381 75 0 7 chr1 192332468 192332763 -50331590 + AluSc SINE Alu 1 293 -16 1531 161 10 64 chr1 192332763 192332800 -50331553 - AluJo SINE Alu -274 38 1 1552 191 88 116 chr1 192332800 192332811 -50331542 - Charlie2 DNA MER1_type -368 2494 2484 3012 146 14 26 chr1 192332811 192332846 -50331507 - L1MB8 LINE L1 -2 6176 6142 2078 124 0 3 chr1 192332846 192333154 -50331199 + AluSg SINE Alu 1 307 0 3012 146 14 26 chr1 192333154 192333623 -50330730 - L1MB8 LINE L1 -36 6142 5677 1552 191 88 116 chr1 192333623 192333676 -50330677 - Charlie2 DNA MER1_type -378 2484 2431 2137 131 0 0 chr1 192333676 192333988 -50330365 + AluSx SINE Alu 1 312 0 1552 191 88 116 chr1 192333988 192334480 -50329873 - Charlie2 DNA MER1_type -431 2431 1927 870 180 60 7 chr1 192334480 192334630 -50329723 + FAM SINE Alu 1 158 -17 381 22 0 0 chr1 192334635 192334681 -50329672 + (TG)n Simple_repeat Simple_repeat 2 47 0 1552 191 88 116 chr1 192334681 192334774 -50329579 - Charlie2 DNA MER1_type -939 1923 1858 250 230 33 64 chr1 192334769 192334957 -50329396 - Charlie2 DNA MER1_type -2533 329 83 * 655 250 155 0 chr1 192335365 192335565 -50328788 + MIR SINE MIR 1 231 -31 2647 235 82 51 chr1 192335859 192336484 -50327869 + L2 LINE L2 2054 2718 -595 1813 154 11 7 chr1 192336484 192336770 -50327583 - AluJb SINE Alu -25 287 1 2647 235 82 51 chr1 192336770 192337121 -50327232 + L2 LINE L2 2718 3056 -257 227 196 39 0 chr1 192337930 192337981 -50326372 + MIR SINE MIR 36 88 -174 375 299 58 58 chr1 192339574 192339748 -50324605 - MER5A DNA MER1_type -1 188 15 2195 109 3 3 chr1 192339892 192340194 -50324159 + AluSq SINE Alu 1 302 -11 277 287 40 10 chr1 192340352 192340453 -50323900 - MIR SINE MIR -34 228 125 201 74 37 37 chr1 192341301 192341355 -50322998 + (TTTTTG)n Simple_repeat Simple_repeat 1 54 0 531 97 14 0 chr1 192341357 192341429 -50322924 - HY3 scRNA scRNA -28 73 1 251 318 78 16 chr1 192341437 192341566 -50322787 - L2 LINE L2 -572 2742 2606 222 37 0 0 chr1 192341832 192341859 -50322494 + (ATG)n Simple_repeat Simple_repeat 3 29 0 355 346 67 51 chr1 192341869 192342115 -50322238 - L2 LINE L2 -804 2510 2256 2273 100 0 3 chr1 192342115 192342415 -50321938 + AluSg SINE Alu 1 299 -11 355 346 67 51 chr1 192342415 192342483 -50321870 - L2 LINE L2 -1058 2256 2191 364 294 113 29 chr1 192342588 192342863 -50321490 - L2 LINE L2 -7 3306 3009 1067 216 30 13 chr1 192342872 192343108 -50321245 - MIR SINE MIR -10 252 13 208 336 19 57 chr1 192343292 192343410 -50320943 + MIR SINE MIR 39 151 -69 391 283 73 107 chr1 192344143 192344638 -50319715 + L2 LINE L2 2832 3309 -4 271 236 83 0 chr1 192344918 192344990 -50319363 + L1MB8 LINE L1 5441 5518 -2290 235 283 43 0 chr1 192345002 192345094 -50319259 + L1MB8 LINE L1 5566 5661 -460 345 222 36 144 chr1 192345112 192345198 -50319155 + L1MB8 LINE L1 5725 5819 -359 2451 93 0 0 chr1 192345198 192345509 -50318844 + AluSx SINE Alu 1 311 -1 345 222 36 144 chr1 192345509 192345557 -50318796 + L1MB8 LINE L1 5819 5834 -344 210 118 0 0 chr1 192345557 192345591 -50318762 + (TG)n Simple_repeat Simple_repeat 2 35 0 345 222 36 144 chr1 192345591 192345649 -50318704 + L1MB8 LINE L1 5834 5897 -281 1741 150 38 17 chr1 192345654 192345941 -50318412 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr1 192345998 192346021 -50318332 + AT_rich Low_complexity Low_complexity 1 23 0 1890 156 3 3 chr1 192347266 192347554 -50316799 - AluJo SINE Alu -16 296 9 24 32 0 0 chr1 192347949 192347980 -50316373 + AT_rich Low_complexity Low_complexity 1 31 0 729 360 76 5 chr1 192349908 192350328 -50314025 + L2 LINE L2 807 1256 -2058 937 182 0 12 chr1 192350338 192350503 -50313850 - AluJb SINE Alu -14 298 136 1295 222 95 0 chr1 192350772 192351078 -50313275 + L2 LINE L2 2474 2808 -506 1269 146 10 0 chr1 192351078 192351277 -50313076 + MER3 DNA MER1_type 1 201 -8 1131 234 31 55 chr1 192351370 192351798 -50312555 + L2 LINE L2 2709 3114 -199 811 146 0 16 chr1 192351808 192351931 -50312422 - AluJb SINE Alu -188 124 4 351 252 267 0 chr1 192351939 192352070 -50312283 + L2 LINE L2 3117 3282 -31 405 39 0 0 chr1 192352072 192352123 -50312230 + (CA)n Simple_repeat Simple_repeat 1 51 0 192 197 229 0 chr1 192352327 192352388 -50311965 - MIR SINE MIR -119 143 69 2111 125 10 10 chr1 192352589 192352901 -50311452 + AluSx SINE Alu 1 312 0 2391 96 3 3 chr1 192353675 192353987 -50310366 - AluSx SINE Alu 0 312 1 394 252 206 21 chr1 192354530 192354816 -50309537 + L1ME4a LINE L1 5576 5914 -207 941 196 0 0 chr1 192354930 192355093 -50309260 - AluJo SINE Alu -30 282 120 21 36 0 0 chr1 192355142 192355170 -50309183 + AT_rich Low_complexity Low_complexity 1 28 0 357 125 250 23 chr1 192356641 192356729 -50307624 + L2 LINE L2 3206 3313 0 2375 81 7 10 chr1 192356918 192357228 -50307125 - AluSg SINE Alu -1 309 1 553 263 101 20 chr1 192357471 192357718 -50306635 + L2 LINE L2 3046 3312 -1 22 0 0 0 chr1 192357830 192357852 -50306501 + AT_rich Low_complexity Low_complexity 1 22 0 2320 97 10 3 chr1 192357932 192358240 -50306113 - AluSx SINE Alu -2 310 1 218 93 0 23 chr1 192359210 192359253 -50305100 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1211 132 154 13 chr1 192359253 192359480 -50304873 - AluJo SINE Alu -20 292 34 2088 133 0 0 chr1 192359518 192359803 -50304550 - AluSx SINE Alu -27 285 1 23 0 0 0 chr1 192359963 192359986 -50304367 + AT_rich Low_complexity Low_complexity 1 23 0 246 333 17 51 chr1 192360190 192360307 -50304046 + L2 LINE L2 3198 3310 -3 246 32 0 0 chr1 192360605 192360636 -50303717 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1931 102 0 0 chr1 192360636 192360890 -50303463 - AluSx SINE Alu -58 254 1 2174 107 20 0 chr1 192361059 192361357 -50302996 - AluSq SINE Alu -9 304 1 1208 193 5 36 chr1 192361396 192361619 -50302734 + AluJo SINE Alu 6 221 -91 1279 103 0 11 chr1 192361722 192361896 -50302457 - AluSx SINE Alu -140 172 1 250 345 134 0 chr1 192362154 192362273 -50302080 + MIR SINE MIR 37 171 -91 976 198 11 16 chr1 192362373 192362560 -50301793 + MER20 DNA MER1_type 1 186 -33 319 185 0 0 chr1 192362748 192362802 -50301551 + MER20 DNA MER1_type 166 219 0 2302 74 3 10 chr1 192363097 192363393 -50300960 + AluSg1 SINE Alu 1 294 -15 844 192 70 13 chr1 192363635 192363791 -50300562 + FAM SINE Alu 1 165 -10 1354 145 20 0 chr1 192363846 192364046 -50300307 - AluSg/x SINE Alu -2 310 107 764 139 0 0 chr1 192364146 192364254 -50300099 - AluJb SINE Alu -200 112 5 2068 126 0 0 chr1 192364283 192364568 -50299785 + AluSx SINE Alu 14 298 -14 2014 138 0 0 chr1 192364572 192364868 -50299485 + AluJb SINE Alu 1 296 -16 280 288 206 6 chr1 192365231 192365401 -50298952 - MIR SINE MIR -12 250 47 2423 85 0 0 chr1 192366941 192367247 -50297106 + AluY SINE Alu 1 306 -5 211 228 228 0 chr1 192367283 192367375 -50296978 - L2 LINE L2 -2 3311 3199 180 306 0 42 chr1 192367482 192367554 -50296799 - L2 LINE L2 -254 3018 2950 2410 87 0 0 chr1 192368095 192368395 -50295958 + AluY SINE Alu 1 300 -11 622 300 174 27 chr1 192368474 192368887 -50295466 + L2 LINE L2 2475 2948 -366 192 343 68 0 chr1 192368881 192368954 -50295399 + L2 LINE L2 3193 3270 -2 * 198 324 99 0 chr1 192369009 192369120 -50295233 - L2 LINE L2 -2992 322 201 1446 206 74 10 chr1 192469184 192469578 -50194775 + L1MB7 LINE L1 4442 4860 -1286 338 270 0 0 chr1 192470559 192470648 -50193705 - L1M4 LINE L1 -1279 4867 4779 1561 76 5 0 chr1 192470773 192470971 -50193382 + AluSp SINE Alu 103 301 -12 3419 181 42 23 chr1 192470973 192472038 -50192315 + L1MB7 LINE L1 4951 6024 -160 195 42 0 0 chr1 192472176 192472200 -50192153 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1873 150 27 3 chr1 192472245 192472538 -50191815 + AluSx SINE Alu 2 301 -11 310 50 0 0 chr1 192473603 192473643 -50190710 - Alu SINE Alu -261 40 1 192 167 28 0 chr1 192473658 192473694 -50190659 + L2 LINE L2 2282 2318 -996 1537 133 114 26 chr1 192474257 192474521 -50189832 - AluJb SINE Alu -11 301 15 472 219 112 62 chr1 192474561 192474739 -50189614 - MIR SINE MIR -24 238 52 2253 72 0 93 chr1 192475164 192475496 -50188857 + AluSx SINE Alu 1 301 -11 2079 133 0 25 chr1 192475717 192476033 -50188320 + AluSx SINE Alu 1 308 -4 1227 243 70 29 chr1 192476307 192476751 -50187602 - LTR16B LTR ERVL -2 462 1 2174 113 10 0 chr1 192477027 192477329 -50187024 + AluSp SINE Alu 1 305 -8 1925 145 0 0 chr1 192477927 192478203 -50186150 - AluSx SINE Alu -17 295 20 2159 113 0 14 chr1 192478279 192478570 -50185783 + AluSx SINE Alu 1 287 -25 2173 102 17 0 chr1 192478816 192479111 -50185242 + AluSq SINE Alu 1 300 -13 2007 127 3 0 chr1 192479370 192479680 -50184673 - AluSx SINE Alu 0 311 1 248 140 0 0 chr1 192479726 192479776 -50184577 + Alu SINE Alu 252 301 0 215 274 196 10 chr1 192479850 192479952 -50184401 - MIR3 SINE MIR -47 161 41 31 96 0 0 chr1 192480557 192480651 -50183702 + AT_rich Low_complexity Low_complexity 1 94 0 860 161 29 0 chr1 192480673 192480810 -50183543 - FLAM_C SINE Alu -2 141 1 26 0 0 0 chr1 192481608 192481634 -50182719 + AT_rich Low_complexity Low_complexity 1 26 0 2449 75 3 0 chr1 192482289 192482597 -50181756 + AluY SINE Alu 1 309 -2 656 68 0 10 chr1 192483168 192483271 -50181082 + Alu SINE Alu 204 305 -6 1109 198 94 119 chr1 192483397 192484088 -50180265 - L1MC5 LINE L1 -50 7911 7238 298 194 45 0 chr1 192484104 192484171 -50180182 - L1MC5 LINE L1 -813 7148 7079 233 167 0 0 chr1 192485029 192485071 -50179282 - L1MC5 LINE L1 -892 7069 7028 597 302 101 64 chr1 192485172 192485686 -50178667 - L2 LINE L2 -448 2866 2334 387 171 101 0 chr1 192485703 192485812 -50178541 - L1MC4 LINE L1 -37 8005 7782 222 37 0 0 chr1 192485830 192485857 -50178496 + (TG)n Simple_repeat Simple_repeat 2 28 0 1948 96 92 11 chr1 192485888 192486160 -50178193 - AluSq SINE Alu -16 297 4 2292 107 3 3 chr1 192486162 192486462 -50177891 - AluSx SINE Alu -11 301 2 22 0 0 0 chr1 192486507 192486529 -50177824 + AT_rich Low_complexity Low_complexity 1 22 0 239 229 119 25 chr1 192486529 192486647 -50177706 - L1MC4 LINE L1 -146 7896 7768 1236 127 6 0 chr1 192486647 192486820 -50177533 + AluSq SINE Alu 134 307 -6 299 326 124 39 chr1 192486966 192487352 -50177001 - L2 LINE L2 -658 2656 2238 362 330 77 23 chr1 192487484 192487705 -50176648 - L1ME4a LINE L1 -217 5904 5672 239 226 0 16 chr1 192487738 192487800 -50176553 - L1MC4 LINE L1 -261 7781 7721 322 312 117 13 chr1 192487905 192488059 -50176294 + L3b LINE CR1 1405 1574 -9 25 51 0 0 chr1 192488719 192488758 -50175595 + AT_rich Low_complexity Low_complexity 1 39 0 2154 89 0 83 chr1 192488906 192489232 -50175121 + AluSq SINE Alu 1 299 -14 395 297 26 99 chr1 192489378 192489610 -50174743 - MLT1K LTR MaLR -361 227 13 615 287 38 5 chr1 192489723 192489932 -50174421 + MLT1J LTR MaLR 6 221 -290 1016 215 64 39 chr1 192489953 192490283 -50174070 - MER44D DNA MER2_type 0 609 2 23 0 0 0 chr1 192490597 192490620 -50173733 + AT_rich Low_complexity Low_complexity 1 23 0 772 277 73 3 chr1 192490631 192490934 -50173419 - L1MC5 LINE L1 -389 7572 7249 1068 218 19 15 chr1 192491015 192491310 -50173043 - L1MC4 LINE L1 -733 7228 6962 23 0 0 0 chr1 192491378 192491401 -50172952 + AT_rich Low_complexity Low_complexity 1 23 0 305 336 47 0 chr1 192492042 192492149 -50172204 - L2 LINE L2 -38 3234 3123 2207 108 0 0 chr1 192492379 192492665 -50171688 + AluSx SINE Alu 2 287 -25 23 0 0 0 chr1 192492671 192492694 -50171659 + AT_rich Low_complexity Low_complexity 1 23 0 1189 96 0 19 chr1 192492922 192493079 -50171274 - AluSq SINE Alu -159 154 1 1794 175 3 32 chr1 192493278 192493587 -50170766 - AluJb SINE Alu -12 300 1 756 253 143 55 chr1 192493796 192494026 -50170327 - L2 LINE L2 -7 3306 3029 1663 204 25 8 chr1 192494026 192494384 -50169969 + MLT1A1 LTR MaLR 2 365 0 756 253 143 55 chr1 192494384 192494532 -50169821 - L2 LINE L2 -284 3029 2895 509 301 151 31 chr1 192495219 192495700 -50168653 - L2 LINE L2 -93 3220 2694 943 293 86 28 chr1 192495706 192496205 -50168148 + L1ME LINE L1 2 529 -5541 240 237 164 114 chr1 192496355 192496498 -50167855 - L2 LINE L2 -1469 1845 1711 2073 144 0 0 chr1 192496498 192496797 -50167556 - AluSx SINE Alu -13 299 1 240 237 164 114 chr1 192496797 192496809 -50167544 - L2 LINE L2 -1603 1711 1701 2232 98 14 0 chr1 192496809 192497106 -50167247 - AluSx SINE Alu -11 301 1 240 237 164 114 chr1 192497106 192497168 -50167185 - L2 LINE L2 -1613 1701 1616 527 194 161 58 chr1 192497177 192497296 -50167057 + MER5A DNA MER1_type 14 154 -35 1719 149 138 46 chr1 192497296 192497647 -50166706 + MSTC LTR MaLR 3 396 -32 2059 84 25 0 chr1 192497647 192497948 -50166405 - AluSg SINE Alu 0 308 1 1719 149 138 46 chr1 192497948 192497985 -50166368 + MSTC LTR MaLR 396 428 0 527 194 161 58 chr1 192497985 192498020 -50166333 + MER5A DNA MER1_type 154 184 -5 848 362 114 15 chr1 192498220 192498903 -50165450 - L2 LINE L2 -1907 1407 657 2063 144 0 0 chr1 192499159 192499457 -50164896 - AluSx SINE Alu -14 298 1 2416 82 0 0 chr1 192499501 192499805 -50164548 - AluSc SINE Alu -5 304 1 21 0 0 0 chr1 192499927 192499948 -50164405 + AT_rich Low_complexity Low_complexity 1 21 0 2154 98 32 0 chr1 192500042 192500327 -50164026 - AluSg SINE Alu -16 294 1 234 264 28 0 chr1 192500639 192500711 -50163642 - L1ME3A LINE L1 -5 6165 6092 738 326 68 3 chr1 192500779 192501147 -50163206 + LTR16B LTR ERVL 73 464 0 963 215 11 45 chr1 192501147 192501412 -50162941 - L1ME3A LINE L1 -83 6087 5832 191 316 90 38 chr1 192501752 192501885 -50162468 + L2 LINE L2 1842 1981 -1333 1066 177 86 115 chr1 192501886 192502259 -50162094 + MER57A LTR ERV1 42 403 0 612 293 36 12 chr1 192502312 192502565 -50161788 + MIR SINE MIR 3 261 -1 1286 155 10 29 chr1 192502695 192502902 -50161451 - AluJo SINE Alu -21 291 89 409 321 67 31 chr1 192502903 192503096 -50161257 + L2 LINE L2 2153 2352 -962 480 250 45 0 chr1 192503930 192504062 -50160291 + MER69 DNA AcHobo 10 147 -1079 415 274 37 40 chr1 192504199 192504575 -50159778 + L1M4 LINE L1 2506 2880 -3266 2158 108 4 0 chr1 192504682 192504961 -50159392 + AluSc SINE Alu 2 281 -28 1945 161 10 6 chr1 192505017 192505328 -50159025 + AluJb SINE Alu 1 312 0 297 0 0 0 chr1 192505360 192505393 -50158960 + (CA)n Simple_repeat Simple_repeat 2 34 0 441 263 71 54 chr1 192505393 192505874 -50158479 + L1M4 LINE L1 2961 3432 -2714 2126 117 0 23 chr1 192505874 192506173 -50158180 - AluSx SINE Alu -20 292 1 441 263 71 54 chr1 192506173 192506721 -50157632 + L1M4 LINE L1 3432 4191 -1955 512 233 83 45 chr1 192506842 192507108 -50157245 + L1M4 LINE L1 4387 4662 -1484 2478 74 3 0 chr1 192508005 192508303 -50156050 - AluSp SINE Alu -14 299 1 25 0 0 0 chr1 192508973 192508998 -50155355 + AT_rich Low_complexity Low_complexity 1 25 0 2170 115 10 0 chr1 192510180 192510476 -50153877 + AluSq SINE Alu 1 299 -14 450 304 62 33 chr1 192510935 192511175 -50153178 - L2 LINE L2 -836 2478 2232 295 218 314 0 chr1 192511624 192511748 -50152605 - MIR SINE MIR -34 228 66 350 270 70 40 chr1 192512856 192512956 -50151397 + L2 LINE L2 3169 3271 -1 203 281 34 90 chr1 192513250 192513274 -50151079 + MIR SINE MIR 50 74 -134 2311 125 0 0 chr1 192513274 192513586 -50150767 - AluSx SINE Alu 0 312 1 203 281 34 90 chr1 192513586 192513650 -50150703 + MIR SINE MIR 74 133 -75 539 259 86 23 chr1 192513673 192513893 -50150460 + L2 LINE L2 2827 3060 -253 198 263 81 65 chr1 192514128 192514314 -50150039 + L2 LINE L2 2153 2341 -973 3045 197 124 32 chr1 192514314 192514875 -50149478 + L1MC4 LINE L1 6491 6999 -1043 2533 59 0 0 chr1 192514875 192515182 -50149171 + AluY SINE Alu 1 307 -4 3045 197 124 32 chr1 192515182 192515589 -50148764 + L1MC4 LINE L1 6999 7548 -494 1702 145 36 50 chr1 192516439 192516742 -50147611 - AluSx SINE Alu -11 301 3 2094 12 92 0 chr1 192516850 192517100 -50147253 - AluYa5 SINE Alu -38 273 1 241 276 133 31 chr1 192517106 192517302 -50147051 + MLT1K LTR MaLR 345 560 -28 445 289 203 34 chr1 192517331 192517630 -50146723 + L2 LINE L2 1820 2067 -1247 1524 158 81 15 chr1 192517630 192517902 -50146451 + AluJo SINE Alu 1 290 -22 2502 47 0 3 chr1 192517910 192518208 -50146145 + AluY SINE Alu 1 297 -14 445 289 203 34 chr1 192518208 192518656 -50145697 + L2 LINE L2 2072 2704 -610 383 53 0 0 chr1 192518656 192518713 -50145640 - L1MB3 LINE L1 -7 6176 6120 764 142 8 8 chr1 192519059 192519186 -50145167 + AluSq/x SINE Alu 3 129 -183 333 333 28 35 chr1 192519193 192519334 -50145019 + MIR SINE MIR 5 144 -118 1122 128 44 75 chr1 192519478 192519704 -50144649 + MER20 DNA MER1_type 1 219 0 257 324 10 0 chr1 192519717 192519819 -50144534 + MIR SINE MIR 144 246 -16 185 265 0 20 chr1 192520076 192520125 -50144228 + L2 LINE L2 3008 3055 -258 216 308 0 13 chr1 192520321 192520399 -50143954 + L2 LINE L2 1964 2040 -1274 668 269 110 9 chr1 192520615 192520842 -50143511 + MIR SINE MIR 5 254 -8 2224 103 0 0 chr1 192520846 192521170 -50143183 - AluSx SINE Alu 0 324 1 190 265 0 73 chr1 192521271 192521339 -50143014 + L2 LINE L2 2583 2645 -669 414 262 233 6 chr1 192522625 192522797 -50141556 + MIR SINE MIR 1 211 -51 469 284 68 26 chr1 192522840 192523030 -50141323 + MIR SINE MIR 31 228 -34 207 0 0 0 chr1 192525185 192525208 -50139145 + (CCG)n Simple_repeat Simple_repeat 3 25 0 239 300 64 18 chr1 192525889 192525999 -50138354 + LTR67 LTR ERVL 428 542 -15 235 250 39 0 chr1 192526071 192526123 -50138230 - MIR3 SINE MIR -2 206 153 259 235 0 78 chr1 192526127 192526229 -50138124 + MER112 DNA MER1_type 6 99 -161 287 221 12 58 chr1 192526272 192526358 -50137995 + MER112 DNA MER1_type 178 259 -1 2169 140 0 0 chr1 192526358 192526665 -50137688 + AluSx SINE Alu 1 307 -5 2026 136 0 10 chr1 192527266 192527590 -50136763 - AluSx SINE Alu 0 312 1 856 182 7 7 chr1 192527773 192527989 -50136364 + FRAM SINE Alu 1 80 0 518 335 58 4 chr1 192528556 192528798 -50135555 - L2 LINE L2 -136 3177 2923 994 314 58 13 chr1 192528968 192529486 -50134867 - L2 LINE L2 -64 3249 2702 2268 112 0 3 chr1 192529561 192529864 -50134489 - AluSx SINE Alu -10 302 1 21 0 0 0 chr1 192530142 192530163 -50134190 + AT_rich Low_complexity Low_complexity 1 21 0 1130 152 6 0 chr1 192530609 192530787 -50133566 + AluSg/x SINE Alu 134 312 0 206 195 39 39 chr1 192530889 192530966 -50133387 + GA-rich Low_complexity Low_complexity 1 77 0 1033 155 12 0 chr1 192531814 192531982 -50132371 + AluJb SINE Alu 123 292 -20 827 142 0 0 chr1 192531989 192532102 -50132251 + FLAM_C SINE Alu 1 113 -30 23 33 0 0 chr1 192532261 192532291 -50132062 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr1 192532634 192532676 -50131677 + AT_rich Low_complexity Low_complexity 1 42 0 358 276 0 16 chr1 192533144 192533271 -50131082 - L1ME4a LINE L1 -257 5864 5740 1885 149 3 19 chr1 192535560 192535869 -50128484 - AluJb SINE Alu 0 312 9 250 250 11 34 chr1 192536232 192536320 -50128033 - MIR SINE MIR -91 171 86 379 218 83 32 chr1 192536328 192536344 -50128009 - L1MA10 LINE L1 -2 6332 6317 1962 209 112 19 chr1 192536344 192536816 -50127537 - L1ME1 LINE L1 -5 6161 5612 1428 163 113 21 chr1 192536816 192537098 -50127255 - AluJb SINE Alu -4 308 1 1962 209 112 19 chr1 192537098 192537270 -50127083 - L1ME1 LINE L1 -554 5612 5457 1110 237 104 50 chr1 192537379 192538013 -50126340 + L2 LINE L2 2664 3313 0 2380 92 3 0 chr1 192539286 192539590 -50124763 + AluSg SINE Alu 1 305 -5 1699 152 7 42 chr1 192540396 192540706 -50123647 + AluJb SINE Alu 1 299 -13 2120 119 20 3 chr1 192541217 192541519 -50122834 - AluSq SINE Alu -6 307 1 827 129 0 50 chr1 192541928 192542068 -50122285 + FLAM_C SINE Alu 1 133 0 4613 178 30 47 chr1 192542108 192542297 -50122056 - L1MD2 LINE L1 -25 6334 6143 186 103 0 0 chr1 192542297 192542326 -50122027 + (TG)n Simple_repeat Simple_repeat 2 30 0 4613 178 30 47 chr1 192542326 192542673 -50121680 - L1MD2 LINE L1 -216 6143 5792 3211 138 38 5 chr1 192542673 192543247 -50121106 - L1MA8 LINE L1 -4 6287 5695 4613 178 30 47 chr1 192543247 192543612 -50120741 - L1MD2 LINE L1 -567 5792 5422 277 74 19 19 chr1 192543612 192543666 -50120687 + (TTTTA)n Simple_repeat Simple_repeat 3 56 0 4613 178 30 47 chr1 192543666 192544158 -50120195 - L1MD2 LINE L1 -937 5422 4963 402 233 86 0 chr1 192544385 192544501 -50119852 + MIR SINE MIR 123 248 -14 227 131 33 33 chr1 192544766 192544772 -50119581 + (TA)n Simple_repeat Simple_repeat 1 6 -55 1605 225 143 20 chr1 192544772 192544797 -50119556 + MLT1F1 LTR MaLR 1 22 -545 1973 127 0 10 chr1 192544797 192545088 -50119265 + AluSg SINE Alu 1 288 -22 1605 225 143 20 chr1 192545088 192545564 -50118789 + MLT1F1 LTR MaLR 22 564 -3 227 131 33 33 chr1 192545564 192545618 -50118735 + (TA)n Simple_repeat Simple_repeat 5 61 0 2047 145 0 7 chr1 192545635 192545924 -50118429 + AluSx SINE Alu 1 287 -25 352 295 93 39 chr1 192545988 192546224 -50118129 - HAL1 LINE L1 -849 1658 1436 1833 75 72 106 chr1 192546224 192546501 -50117852 + AluSc SINE Alu 1 267 -42 243 0 0 0 chr1 192546501 192546528 -50117825 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1833 75 72 106 chr1 192546528 192546570 -50117783 + AluSc SINE Alu 267 309 0 352 295 93 39 chr1 192546570 192546851 -50117502 - HAL1 LINE L1 -1071 1436 1113 2314 92 49 30 chr1 192547626 192547994 -50116359 - THE1C LTR MaLR 0 375 1 2046 128 0 0 chr1 192548653 192548978 -50115375 + AluSc SINE Alu 1 325 0 1982 147 0 31 chr1 192549566 192549885 -50114468 + AluJb SINE Alu 2 310 -2 183 242 97 16 chr1 192549887 192549949 -50114404 + L3b LINE CR1 1149 1215 -368 180 0 0 0 chr1 192549979 192549999 -50114354 + (TG)n Simple_repeat Simple_repeat 1 20 0 5510 219 128 24 chr1 192550125 192550399 -50113954 - L1ME2 LINE L1 -209 6349 6105 1510 153 114 21 chr1 192550399 192550680 -50113673 - AluJb SINE Alu -5 307 1 5510 219 128 24 chr1 192550680 192551094 -50113259 - L1ME2 LINE L1 -453 6105 5735 1774 162 16 32 chr1 192551094 192551403 -50112950 - AluJb SINE Alu -8 304 1 5510 219 128 24 chr1 192551403 192552994 -50111359 - L1ME2 LINE L1 -823 5735 4311 2144 119 7 3 chr1 192552994 192553304 -50111049 - AluSx SINE Alu -1 311 1 2171 121 0 7 chr1 192553308 192553605 -50110748 - AluSx SINE Alu -17 295 1 5510 219 128 24 chr1 192553605 192553993 -50110360 - L1ME2 LINE L1 -2249 4309 3396 2232 113 7 0 chr1 192553995 192554297 -50110056 - AluSx SINE Alu -8 304 1 7911 130 35 18 chr1 192554303 192555729 -50108624 + Tigger1 DNA MER2_type 969 2418 0 3638 188 54 15 chr1 192555729 192556246 -50108107 - L1MC1 LINE L1 -410 6203 5708 2213 112 0 34 chr1 192556246 192556567 -50107786 - AluSx SINE Alu -2 310 1 3638 188 54 15 chr1 192556567 192557631 -50106722 - L1MC1 LINE L1 -905 5708 4564 3080 177 35 45 chr1 192557631 192558378 -50105975 - L1MC1 LINE L1 -5670 756 18 2336 96 0 0 chr1 192558467 192558760 -50105593 - AluSq SINE Alu -20 293 1 514 266 84 55 chr1 192558811 192559191 -50105162 - L1ME2 LINE L1 -4711 1829 1439 1514 123 0 0 chr1 192559390 192559593 -50104760 + AluSg/x SINE Alu 92 294 -18 2005 127 65 76 chr1 192559895 192559996 -50104357 + L1MD1 LINE L1 5790 5891 -351 1895 102 68 8 chr1 192559996 192560262 -50104091 + AluSx SINE Alu 1 282 -30 2005 127 65 76 chr1 192560262 192560618 -50103735 + L1MD1 LINE L1 5891 6242 0 482 332 20 20 chr1 192560749 192560948 -50103405 + MIR SINE MIR 63 261 -1 395 169 26 13 chr1 192561851 192561928 -50102425 + Tigger2 DNA MER2_type 1 78 -2640 687 229 110 31 chr1 192561962 192562189 -50102164 - L1MC4a LINE L1 -998 6810 6566 667 199 48 14 chr1 192562577 192562723 -50101630 - MIR SINE MIR -104 158 8 23 0 0 0 chr1 192562794 192562817 -50101536 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr1 192562987 192563034 -50101319 + (CA)n Simple_repeat Simple_repeat 2 48 0 1237 206 174 67 chr1 192563301 192563811 -50100542 - MLT1F1 LTR MaLR -2 565 1 2218 123 0 0 chr1 192564684 192564984 -50099369 + AluSc SINE Alu 1 300 -9 229 269 63 75 chr1 192565010 192565278 -50099075 + L1ME LINE L1 5651 5915 -206 1723 134 3 104 chr1 192565524 192565852 -50098501 + AluJb SINE Alu 1 295 -17 191 278 56 0 chr1 192567730 192567784 -50096569 - L2 LINE L2 -1 3312 3256 258 354 50 6 chr1 192568207 192568339 -50096014 + MIR SINE MIR 17 150 -62 939 215 65 103 chr1 192568352 192568719 -50095634 - MER57A LTR ERV1 -9 394 42 309 301 128 58 chr1 192568971 192569451 -50094902 - L2 LINE L2 -812 2502 1968 1716 94 0 0 chr1 192569451 192569674 -50094679 + AluSg/x SINE Alu 85 307 -5 309 301 128 58 chr1 192569674 192569808 -50094545 - L2 LINE L2 -1346 1968 1845 24 0 0 0 chr1 192569837 192569861 -50094492 + AT_rich Low_complexity Low_complexity 1 24 0 185 0 40 0 chr1 192569910 192569935 -50094418 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1723 42 5 0 chr1 192569935 192570151 -50094202 - L1PA5 LINE L1 -13 6141 5925 263 297 55 50 chr1 192570357 192570539 -50093814 - MIR3 SINE MIR -10 198 16 274 366 17 11 chr1 192570683 192570858 -50093495 + MIR SINE MIR 33 208 -54 348 280 204 0 chr1 192571123 192571255 -50093098 + MIR SINE MIR 104 262 0 186 386 50 10 chr1 192572234 192572335 -50092018 - L2 LINE L2 -8 3264 3160 2066 136 0 3 chr1 192572544 192572852 -50091501 - AluSg SINE Alu -3 307 1 2135 144 0 0 chr1 192572852 192573164 -50091189 - AluSx SINE Alu 0 312 1 378 303 56 51 chr1 192573289 192573467 -50090886 + MIR SINE MIR 34 212 -50 22 0 0 0 chr1 192573548 192573570 -50090783 + AT_rich Low_complexity Low_complexity 1 22 0 313 244 23 12 chr1 192573733 192573819 -50090534 + MIR SINE MIR 65 151 -111 1955 151 0 4 chr1 192573846 192574427 -50089926 + AluSx SINE Alu 1 283 -29 29481 60 12 4 chr1 192574670 192578854 -50085499 - L1PA3 LINE L1 -129 6026 1797 2297 101 0 0 chr1 192578854 192579150 -50085203 + AluSc SINE Alu 1 296 -13 29481 60 12 4 chr1 192579150 192579578 -50084775 - L1PA3 LINE L1 -4358 1797 1374 257 314 91 16 chr1 192580116 192580237 -50084116 + MIR SINE MIR 13 142 -120 594 223 181 6 chr1 192581052 192581218 -50083135 + MIR SINE MIR 28 222 -40 2032 136 0 0 chr1 192581794 192582096 -50082257 - AluY SINE Alu -9 302 1 197 302 116 0 chr1 192582820 192582906 -50081447 + MIR SINE MIR 91 186 -76 191 268 14 42 chr1 192582956 192583027 -50081326 + MIR SINE MIR 181 249 -13 185 340 0 0 chr1 192583232 192583282 -50081071 - L2 LINE L2 -20 3252 3203 448 198 0 22 chr1 192583367 192583458 -50080895 + MER5B DNA MER1_type 1 89 -89 692 280 90 45 chr1 192583869 192584467 -50079886 + L1MC4a LINE L1 5044 5668 -743 207 0 0 0 chr1 192584614 192584637 -50079716 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 469 15 0 44 chr1 192584636 192584704 -50079649 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 206 409 72 16 chr1 192584724 192585030 -50079323 - L2 LINE L2 -635 2679 2357 2192 112 0 3 chr1 192585610 192585913 -50078440 - AluSx SINE Alu -10 302 1 185 182 0 0 chr1 192585995 192586028 -50078325 + L2 LINE L2 3273 3305 -8 3266 233 72 98 chr1 192586465 192586522 -50077831 + L1MC4a LINE L1 5771 5828 -1980 2259 110 0 3 chr1 192586522 192586831 -50077522 + AluSg SINE Alu 3 310 0 3266 233 72 98 chr1 192586831 192587323 -50077030 + L1MC4a LINE L1 5828 6331 -1477 2237 92 0 0 chr1 192587323 192587629 -50076724 - AluSx SINE Alu 0 306 1 3266 233 72 98 chr1 192587629 192588836 -50075517 + L1MC4a LINE L1 6331 7483 -325 806 203 94 0 chr1 192588830 192589022 -50075331 + L1MD3 LINE L1 7770 7979 -16 * 721 248 63 41 chr1 192589032 192589350 -50075003 + L1MC4 LINE L1 7000 7324 -718 1113 194 66 0 chr1 192589358 192589569 -50074784 + Tigger7 DNA MER2_type 8 232 -318 583 158 50 0 chr1 192589571 192589672 -50074681 + Tigger7 DNA MER2_type 2382 2487 0 1019 224 73 13 chr1 192589672 192589975 -50074378 + L1MC4 LINE L1 7323 7643 -399 616 185 25 99 chr1 192590033 192590149 -50074204 + L1MC4 LINE L1 7788 7805 -190 324 0 0 0 chr1 192590149 192590185 -50074168 + (TG)n Simple_repeat Simple_repeat 2 37 0 616 185 25 99 chr1 192590185 192590363 -50073990 + L1MC4 LINE L1 7805 7994 -1 834 139 0 0 chr1 192590664 192590786 -50073567 + AluSq/x SINE Alu 1 122 -191 1825 163 3 0 chr1 192590863 192591152 -50073201 + AluJo SINE Alu 21 310 -2 22 56 0 0 chr1 192591343 192591379 -50072974 + AT_rich Low_complexity Low_complexity 1 36 0 233 271 131 0 chr1 192591512 192591619 -50072734 + MER103 DNA DNA 45 165 -1 1832 137 31 10 chr1 192591970 192592262 -50072091 + AluSx SINE Alu 1 298 -14 480 223 0 74 chr1 192592645 192592766 -50071587 - MIR3 SINE MIR -35 173 62 311 125 36 0 chr1 192592939 192592995 -50071358 + MER53 DNA DNA 113 170 -19 267 312 0 0 chr1 192595043 192595152 -50069201 + (TA)n Simple_repeat Simple_repeat 1 109 0 236 242 44 66 chr1 192595167 192595258 -50069095 - L1MC4 LINE L1 -1339 6703 6615 192 273 0 0 chr1 192595292 192595358 -50068995 + (TA)n Simple_repeat Simple_repeat 1 66 0 376 460 0 0 chr1 192595375 192595551 -50068802 + (CA)n Simple_repeat Simple_repeat 2 177 0 * 464 394 11 0 chr1 192595426 192595601 -50068752 + (CATA)n Simple_repeat Simple_repeat 3 179 0 253 255 0 43 chr1 192595611 192595705 -50068648 + L1MC4 LINE L1 6614 6703 -1339 * 262 256 47 0 chr1 192595621 192595707 -50068646 - L1MC4 LINE L1 -1339 6703 6614 2346 84 0 3 chr1 192595718 192596014 -50068339 - AluSq SINE Alu -18 295 1 2096 116 21 0 chr1 192596025 192596309 -50068044 - AluSg SINE Alu -18 292 3 250 313 0 0 chr1 192596960 192597027 -50067326 - L2 LINE L2 0 3313 3247 354 312 39 0 chr1 192597516 192597670 -50066683 - L1MEd LINE L1 -5948 171 12 1029 151 0 0 chr1 192597691 192597850 -50066503 - AluSg/x SINE Alu -6 306 148 397 192 30 0 chr1 192597956 192598055 -50066298 + GA-rich Low_complexity Low_complexity 1 102 0 578 255 127 55 chr1 192598239 192598776 -50065577 - L1ME3A LINE L1 -310 5860 5262 308 270 120 11 chr1 192598763 192598958 -50065395 - L1ME3A LINE L1 -1164 4982 4757 * 539 244 37 15 chr1 192599082 192599281 -50065072 - L1ME3A LINE L1 -1541 4605 4406 288 322 41 29 chr1 192599421 192599666 -50064687 - L1ME3A LINE L1 -1955 4191 3944 980 90 0 8 chr1 192599784 192599917 -50064436 - AluSg SINE Alu -178 132 1 1061 248 17 24 chr1 192599919 192600214 -50064139 - L1MC/D LINE L1 -1985 5823 5531 2076 118 7 3 chr1 192600260 192600556 -50063797 + AluSx SINE Alu 1 297 -15 2364 66 17 0 chr1 192602987 192603288 -50061065 + AluSp SINE Alu 1 306 -7 26 30 0 0 chr1 192603307 192603340 -50061013 + AT_rich Low_complexity Low_complexity 1 33 0 766 177 0 31 chr1 192603383 192603513 -50060840 + AluJ SINE Alu 1 126 -186 1801 187 3 0 chr1 192603757 192604067 -50060286 + AluJb SINE Alu 1 311 -1 198 0 0 0 chr1 192604411 192604433 -50059920 + (TG)n Simple_repeat Simple_repeat 1 22 0 1012 236 59 0 chr1 192605353 192605590 -50058763 - MIR SINE MIR 0 262 12 336 137 0 0 chr1 192606522 192606573 -50057780 + Alu SINE Alu 245 295 -7 21 57 0 0 chr1 192606597 192606632 -50057721 + AT_rich Low_complexity Low_complexity 1 35 0 970 178 15 25 chr1 192607004 192607206 -50057147 + AluJ SINE Alu 113 312 0 1912 157 3 0 chr1 192607390 192607689 -50056664 + AluJb SINE Alu 1 300 -12 24 32 0 0 chr1 192607822 192607853 -50056500 + AT_rich Low_complexity Low_complexity 1 31 0 2129 126 3 0 chr1 192608193 192608486 -50055867 + AluSx SINE Alu 1 294 -18 1680 189 10 3 chr1 192608743 192609040 -50055313 + AluJo SINE Alu 1 299 -13 248 233 17 17 chr1 192609478 192609538 -50054815 - L2 LINE L2 -9 3304 3245 387 256 23 0 chr1 192609548 192609634 -50054719 - L2 LINE L2 0 3313 3226 5913 165 21 3 chr1 192610216 192612084 -50052269 - L1PA13 LINE L1 -6 6157 4253 468 226 0 12 chr1 192612608 192612692 -50051661 - L2 LINE L2 -3 3310 3228 200 357 31 39 chr1 192612715 192612844 -50051509 - L2 LINE L2 -436 2878 2751 844 265 134 6 chr1 192612886 192613199 -50051154 - L2 LINE L2 -685 2629 2277 576 261 75 83 chr1 192613250 192613645 -50050708 - L2 LINE L2 -1309 2005 1613 2503 68 6 3 chr1 192613645 192613968 -50050385 + L1PB1 LINE L1 5827 6150 -1 576 261 75 83 chr1 192613968 192614028 -50050325 - L2 LINE L2 -1701 1613 1554 492 244 197 26 chr1 192614200 192614393 -50049960 + L2 LINE L2 2260 2485 -829 1563 171 75 0 chr1 192614393 192614674 -50049679 - AluJo SINE Alu -10 302 1 27 49 0 0 chr1 192615148 192615189 -50049164 + AT_rich Low_complexity Low_complexity 1 41 0 2202 106 0 3 chr1 192615364 192615656 -50048697 - AluSg SINE Alu -19 291 1 2311 108 3 3 chr1 192616804 192617111 -50047242 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr1 192617633 192617663 -50046690 + AT_rich Low_complexity Low_complexity 1 30 0 2326 85 0 0 chr1 192617945 192618281 -50046072 - AluY SINE Alu 0 336 1 1691 98 0 13 chr1 192618410 192618644 -50045709 + AluY SINE Alu 65 295 -16 745 299 82 35 chr1 192618702 192619213 -50045140 + L2 LINE L2 2442 2976 -338 1089 110 0 2 chr1 192619229 192619450 -50044903 - THE1C LTR MaLR -119 256 1 306 310 99 14 chr1 192619462 192619604 -50044749 + L2 LINE L2 3117 3270 -2 26 0 0 0 chr1 192620511 192620537 -50043816 + AT_rich Low_complexity Low_complexity 1 26 0 899 139 0 29 chr1 192620634 192620771 -50043582 + FLAM_C SINE Alu 1 133 0 223 302 0 16 chr1 192620988 192621051 -50043302 - L3 LINE CR1 -21 1556 1495 718 83 62 0 chr1 192621072 192621168 -50043185 - U6 snRNA snRNA -5 102 1 4100 121 73 17 chr1 192621303 192622025 -50042328 - L1MA8 LINE L1 -5 6286 5524 253 368 9 0 chr1 192622025 192622131 -50042222 - L3 LINE CR1 -176 1401 1295 1776 183 3 7 chr1 192622257 192622563 -50041790 + AluJo SINE Alu 1 305 -7 508 278 122 0 chr1 192622604 192622809 -50041544 - MIR SINE MIR -21 241 12 416 296 112 0 chr1 192622857 192623036 -50041317 - L3 LINE CR1 -291 1286 1088 652 143 10 0 chr1 192623036 192623134 -50041219 - LTR47A LTR ERVL 0 452 354 1080 61 0 0 chr1 192623134 192623266 -50041087 + AluSg/x SINE Alu 168 299 -13 22 56 0 0 chr1 192623617 192623653 -50040700 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 192623918 192623939 -50040414 + AT_rich Low_complexity Low_complexity 1 21 0 234 125 0 0 chr1 192626086 192626134 -50038219 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 190 327 60 33 chr1 192629437 192629587 -50034766 + L2 LINE L2 2590 2743 -571 2163 104 21 0 chr1 192629886 192630197 -50034156 - AluSp SINE Alu 0 313 1 25 51 0 0 chr1 192630872 192630911 -50033442 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr1 192631646 192631687 -50032666 + AT_rich Low_complexity Low_complexity 1 41 0 270 0 0 0 chr1 192631701 192631731 -50032622 + (CA)n Simple_repeat Simple_repeat 2 31 0 213 218 36 0 chr1 192631753 192631808 -50032545 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 1963 144 0 10 chr1 192632691 192632982 -50031371 - AluJb SINE Alu -24 288 1 285 250 131 0 chr1 192634198 192634282 -50030071 - L2 LINE L2 0 3313 3219 2344 101 0 7 chr1 192634289 192634595 -50029758 - AluSg SINE Alu -6 304 1 24 67 0 0 chr1 192637692 192637737 -50026616 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr1 192638925 192638954 -50025399 + AT_rich Low_complexity Low_complexity 1 29 0 2599 50 0 7 chr1 192640067 192640370 -50023983 + AluY SINE Alu 1 301 -10 2126 124 3 3 chr1 192640418 192640717 -50023636 + AluSx SINE Alu 9 307 -5 189 0 0 0 chr1 192641367 192641388 -50022965 + (T)n Simple_repeat Simple_repeat 1 21 0 498 104 0 0 chr1 192641650 192641717 -50022636 + Alu SINE Alu 230 296 -16 392 298 9 0 chr1 192641796 192641910 -50022443 - MIR SINE MIR -116 146 32 2404 78 0 0 chr1 192642972 192643268 -50021085 + AluY SINE Alu 2 297 -14 254 289 161 53 chr1 192643811 192644226 -50020127 + L2 LINE L2 2202 2661 -653 2205 129 0 0 chr1 192644647 192644942 -50019411 + AluSx SINE Alu 3 297 -15 417 198 230 0 chr1 192646293 192646419 -50017934 - MIR SINE MIR -70 192 38 1858 165 0 26 chr1 192646487 192646796 -50017557 + AluJo SINE Alu 1 301 -11 32 0 0 0 chr1 192646856 192646888 -50017465 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr1 192646938 192646974 -50017379 + AT_rich Low_complexity Low_complexity 1 36 0 230 265 97 54 chr1 192647213 192647398 -50016955 + L1MC/D LINE L1 5364 5556 -2252 413 208 20 0 chr1 192647478 192647579 -50016774 + (TA)n Simple_repeat Simple_repeat 1 103 0 2042 106 32 0 chr1 192649219 192649502 -50014851 - AluSx SINE Alu -20 292 1 510 219 81 0 chr1 192649562 192649685 -50014668 - MER94 DNA DNA -1 133 1 189 235 20 82 chr1 192650190 192650288 -50014065 + L2 LINE L2 2997 3088 -225 229 212 94 24 chr1 192650607 192650692 -50013661 + LTR5 LTR ERVK 421 511 -458 26 0 0 0 chr1 192651929 192651955 -50012398 + GC_rich Low_complexity Low_complexity 1 26 0 2194 115 0 13 chr1 192655077 192655389 -50008964 - AluSc SINE Alu 0 309 2 548 243 20 7 chr1 192655760 192655912 -50008441 + L2 LINE L2 3158 3311 -2 559 203 0 58 chr1 192656142 192656280 -50008073 - FLAM_C SINE Alu -1 132 3 2065 108 45 7 chr1 192656290 192656576 -50007777 - AluSx SINE Alu -15 297 1 213 264 14 14 chr1 192656641 192656713 -50007640 + MIR SINE MIR 75 146 -62 2283 103 0 0 chr1 192657582 192657864 -50006489 - AluSx SINE Alu -20 292 11 2073 105 0 10 chr1 192657965 192658260 -50006093 + AluSq SINE Alu 22 313 0 448 243 39 77 chr1 192658385 192658566 -50005787 - MIR SINE MIR -1 261 88 227 300 43 0 chr1 192658585 192658655 -50005698 - MIR SINE MIR -108 154 82 1839 146 9 29 chr1 192659345 192659660 -50004693 - AluJo SINE Alu -3 309 1 358 320 63 6 chr1 192659854 192660029 -50004324 - L1ME4a LINE L1 -254 5867 5683 2505 76 0 7 chr1 192660227 192660531 -50003822 + AluY SINE Alu 1 302 -9 440 300 99 17 chr1 192660571 192660804 -50003549 + MIR SINE MIR 11 262 0 1686 118 4 11 chr1 192660862 192661124 -50003229 - AluSx SINE Alu -17 295 36 2405 101 0 0 chr1 192661283 192661626 -50002727 + AluSg SINE Alu 1 343 0 195 283 17 0 chr1 192661999 192662059 -50002294 + L3 LINE CR1 1505 1565 -12 23 33 0 0 chr1 192662117 192662147 -50002206 + AT_rich Low_complexity Low_complexity 1 30 0 377 279 67 31 chr1 192662638 192663219 -50001134 + L1MC5 LINE L1 7149 7576 -385 1798 154 13 20 chr1 192663225 192663524 -50000829 - AluJb SINE Alu -13 299 3 471 217 47 23 chr1 192664288 192664417 -49999936 - MIR SINE MIR -14 248 117 267 54 0 0 chr1 192664528 192664565 -49999788 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1356 121 221 4 chr1 192664567 192664798 -49999555 - AluJb SINE Alu -31 281 1 1687 143 74 12 chr1 192664865 192665318 -49999035 + LTR54 LTR ERV1 1 496 -2 890 31 0 0 chr1 192665554 192665651 -49998702 + AluSc SINE Alu 197 293 -16 248 346 0 12 chr1 192666115 192666196 -49998157 + GA-rich Low_complexity Low_complexity 4 83 0 1535 169 74 114 chr1 192667388 192667486 -49996867 + MLT2D LTR ERVL 1 101 -313 189 0 0 0 chr1 192667486 192667507 -49996846 + (TG)n Simple_repeat Simple_repeat 2 22 0 1535 169 74 114 chr1 192667507 192667839 -49996514 + MLT2D LTR ERVL 101 414 0 361 276 231 0 chr1 192667902 192668051 -49996302 - MER91A DNA MER1_type -4 192 9 1920 159 3 10 chr1 192668071 192668385 -49995968 - AluSx SINE Alu 0 312 1 1775 167 3 3 chr1 192668397 192668702 -49995651 - AluJb SINE Alu -7 305 1 264 167 21 0 chr1 192669046 192669094 -49995259 + L2 LINE L2 3264 3312 -1 1238 212 131 3 chr1 192671171 192671529 -49992824 + Charlie4a DNA MER1_type 17 420 -88 262 319 86 43 chr1 192673946 192674109 -49990244 - MIR3 SINE MIR -24 184 15 1844 149 35 3 chr1 192675805 192676093 -49988260 - AluJb SINE Alu -15 297 1 722 84 0 0 chr1 192676932 192677027 -49987326 + AluY SINE Alu 4 98 -213 1059 85 0 0 chr1 192677028 192677158 -49987195 + AluSg/x SINE Alu 159 288 -22 235 208 0 26 chr1 192677288 192677365 -49986988 + GA-rich Low_complexity Low_complexity 1 75 0 204 125 0 0 chr1 192677529 192677561 -49986792 + (TG)n Simple_repeat Simple_repeat 1 32 0 2168 127 3 16 chr1 192681375 192681689 -49982664 + AluSg SINE Alu 1 310 0 2547 80 6 0 chr1 192681694 192682005 -49982348 + AluSp SINE Alu 1 313 0 2260 108 3 0 chr1 192682263 192682560 -49981793 - AluSx SINE Alu -14 298 1 1002 135 107 0 chr1 192682564 192682742 -49981611 + MER3 DNA MER1_type 13 209 0 1575 145 23 79 chr1 192682896 192683200 -49981153 - AluJo SINE Alu -8 304 18 1624 184 3 20 chr1 192683435 192683728 -49980625 + AluJo SINE Alu 1 288 -24 927 251 23 0 chr1 192683750 192683969 -49980384 - MER58A DNA MER1_type 0 224 1 720 271 41 33 chr1 192684077 192684321 -49980032 + MIR SINE MIR 14 259 -3 2488 93 0 0 chr1 192684408 192684710 -49979643 + AluSx SINE Alu 1 302 -10 2122 137 3 0 chr1 192685003 192685296 -49979057 - AluJb SINE Alu -18 294 1 436 272 61 0 chr1 192685392 192685506 -49978847 - MIR SINE MIR -67 141 21 2006 153 0 10 chr1 192685542 192685843 -49978510 + AluJb SINE Alu 1 298 -14 2673 206 45 31 chr1 192687902 192688546 -49975807 + MER82 DNA MER2_type 1 653 0 1136 139 11 27 chr1 192688742 192688929 -49975424 - AluSg/x SINE Alu -7 305 122 360 222 222 9 chr1 192688939 192689047 -49975306 - MER91A DNA MER1_type -1 195 65 858 228 19 24 chr1 192690722 192690928 -49973425 + MIR SINE MIR 7 211 -51 183 42 0 0 chr1 192691516 192691540 -49972813 + (CTG)n Simple_repeat Simple_repeat 1 24 0 2283 102 7 0 chr1 192692562 192692856 -49971497 - AluSx SINE Alu -16 296 1 188 0 74 0 chr1 192693858 192693885 -49970468 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 369 0 0 0 chr1 192693887 192693928 -49970425 + (TG)n Simple_repeat Simple_repeat 1 41 0 558 0 0 0 chr1 192695924 192695986 -49968367 + (TC)n Simple_repeat Simple_repeat 2 63 0 288 0 0 0 chr1 192695985 192696017 -49968336 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 1853 161 14 7 chr1 192696020 192696312 -49968041 - AluJo SINE Alu -16 296 3 2252 223 91 40 chr1 192696322 192697128 -49967225 + L2 LINE L2 2204 3056 -257 419 268 76 19 chr1 192697319 192697476 -49966877 - MIR SINE MIR -12 250 85 462 234 80 69 chr1 192697479 192697654 -49966699 - MIR SINE MIR -57 205 29 2369 100 3 25 chr1 192698080 192698399 -49965954 - AluSx SINE Alu 0 312 1 875 126 0 22 chr1 192700326 192700461 -49963892 - FRAM SINE Alu -2 174 43 201 237 0 0 chr1 192701013 192701051 -49963302 - MER5A DNA MER1_type -4 185 148 535 328 52 0 chr1 192701320 192701549 -49962804 - MARNA DNA Mariner -163 423 183 2450 68 0 7 chr1 192701552 192701845 -49962508 + AluSq SINE Alu 1 291 -22 25 51 0 0 chr1 192702199 192702238 -49962115 + AT_rich Low_complexity Low_complexity 1 39 0 287 248 50 28 chr1 192702440 192702457 -49961896 - L1MA10 LINE L1 0 6334 6318 1133 194 35 0 chr1 192702457 192702689 -49961664 - L1ME1 LINE L1 -8 6158 5919 1680 177 7 17 chr1 192702689 192702977 -49961376 + AluJb SINE Alu 6 290 -22 282 182 0 0 chr1 192703021 192703076 -49961277 + Alu SINE Alu 246 300 -2 1991 127 50 10 chr1 192703095 192703395 -49960958 + AluJb SINE Alu 1 312 0 2444 208 55 63 chr1 192703405 192703748 -49960605 - L1ME1 LINE L1 -242 5924 5580 2316 90 3 0 chr1 192703748 192704036 -49960317 + AluSp SINE Alu 7 295 -18 2444 208 55 63 chr1 192704036 192704341 -49960012 - L1ME1 LINE L1 -586 5580 5274 1435 169 35 42 chr1 192704341 192704558 -49959795 - AluJo SINE Alu 0 343 127 2224 133 0 0 chr1 192704558 192704860 -49959493 + AluSx SINE Alu 1 302 -10 1435 169 35 42 chr1 192704860 192704987 -49959366 - AluJo SINE Alu -216 127 1 2444 208 55 63 chr1 192704987 192705084 -49959269 - L1ME1 LINE L1 -892 5274 5178 2117 123 3 56 chr1 192705084 192705408 -49958945 - AluSx SINE Alu -5 307 1 2444 208 55 63 chr1 192705408 192705666 -49958687 - L1ME1 LINE L1 -988 5178 4927 1251 130 0 0 chr1 192706130 192706299 -49958054 - AluY SINE Alu -20 291 123 2164 117 17 3 chr1 192708374 192708665 -49955688 - AluSx SINE Alu -17 295 1 2459 70 0 13 chr1 192708920 192709219 -49955134 + AluY SINE Alu 1 295 -16 858 317 76 30 chr1 192709264 192709788 -49954565 + L2 LINE L2 2429 2976 -338 1042 114 0 2 chr1 192709804 192710025 -49954328 - THE1C LTR MaLR -119 256 1 320 257 81 29 chr1 192710043 192710179 -49954174 + L2 LINE L2 3169 3311 -2 217 351 115 7 chr1 192710810 192710958 -49953395 + L3b LINE CR1 1185 1348 -235 26 0 0 0 chr1 192711086 192711112 -49953241 + AT_rich Low_complexity Low_complexity 1 26 0 861 139 0 29 chr1 192711209 192711346 -49953007 + FLAM_C SINE Alu 1 133 0 235 302 0 16 chr1 192711563 192711626 -49952727 - L3 LINE CR1 -21 1556 1495 681 83 62 0 chr1 192711647 192711743 -49952610 - U6 snRNA snRNA -5 102 1 329 339 27 77 chr1 192711752 192711879 -49952474 - L3 LINE CR1 -73 1504 1391 3809 122 72 20 chr1 192711879 192712614 -49951739 - L1MA8 LINE L1 -5 6286 5514 329 339 27 77 chr1 192712614 192712707 -49951646 - L3 LINE CR1 -186 1391 1295 1830 183 3 7 chr1 192712833 192713139 -49951214 + AluJo SINE Alu 1 305 -7 560 299 112 0 chr1 192713161 192713385 -49950968 - MIR SINE MIR -2 260 12 452 296 112 0 chr1 192713433 192713612 -49950741 - L3 LINE CR1 -291 1286 1088 623 143 10 0 chr1 192713612 192713710 -49950643 - LTR47A LTR ERVL 0 452 354 937 102 0 0 chr1 192713710 192713837 -49950516 + AluSg/x SINE Alu 166 292 -18 2129 126 17 0 chr1 192713837 192714139 -49950214 + AluSx SINE Alu 1 307 -5 335 218 0 13 chr1 192714143 192714221 -49950132 - LTR47A LTR ERVL -137 315 239 599 177 18 0 chr1 192714221 192714334 -49950019 + FRAM SINE Alu 1 114 -62 582 145 174 22 chr1 192714432 192714506 -49949847 - LTR47A LTR ERVL -256 196 135 2372 98 0 0 chr1 192714506 192714802 -49949551 + AluSc SINE Alu 3 298 -11 582 145 174 22 chr1 192714802 192714865 -49949488 - LTR47A LTR ERVL -317 135 38 218 217 0 0 chr1 192714868 192714914 -49949439 + A-rich Low_complexity Low_complexity 1 46 0 1908 134 23 20 chr1 192714926 192715232 -49949121 + AluSx SINE Alu 1 307 -5 321 143 0 0 chr1 192715232 192715281 -49949072 - LTR47A LTR ERVL -403 49 1 279 305 9 29 chr1 192715283 192715388 -49948965 - L3 LINE CR1 -487 1090 988 2261 101 0 7 chr1 192715705 192716001 -49948352 + AluSq SINE Alu 9 302 -11 2222 103 0 0 chr1 192716006 192716287 -49948066 + AluSx SINE Alu 1 281 -31 991 178 38 27 chr1 192716317 192716639 -49947714 - L1MC/D LINE L1 -743 5797 5533 1259 215 48 41 chr1 192716667 192716878 -49947475 - L1MC/D LINE L1 -1076 5464 5256 1963 143 10 3 chr1 192716878 192717185 -49947168 + AluSx SINE Alu 1 309 -3 1259 215 48 41 chr1 192717185 192717338 -49947015 - L1MC/D LINE L1 -1284 5256 5094 1710 172 23 13 chr1 192717338 192717640 -49946713 - AluJo SINE Alu -7 305 1 1259 215 48 41 chr1 192717640 192717693 -49946660 - L1MC/D LINE L1 -1446 5094 5043 1004 160 0 0 chr1 192717693 192717837 -49946516 - AluSg/x SINE Alu -18 292 149 3587 215 38 77 chr1 192717860 192717907 -49946446 - L1MC/D LINE L1 -1447 5093 5046 2188 137 0 0 chr1 192717907 192718200 -49946153 - AluSg SINE Alu -17 293 1 3587 215 38 77 chr1 192718200 192719283 -49945070 - L1MC/D LINE L1 -1494 5046 4019 2106 139 3 3 chr1 192719283 192719593 -49944760 - AluSg SINE Alu 0 310 1 3587 215 38 77 chr1 192719593 192719769 -49944584 - L1MC/D LINE L1 -2521 4019 3838 3373 238 76 16 chr1 192719767 192720188 -49944165 - L1MDa LINE L1 -3045 3495 3101 * 2045 149 3 0 chr1 192720188 192720490 -49943863 + AluSx SINE Alu 1 303 -9 3373 238 76 16 chr1 192720490 192721304 -49943049 - L1MDa LINE L1 -3439 3101 2142 2147 102 37 7 chr1 192721304 192721599 -49942754 - AluSx SINE Alu -8 304 1 3373 238 76 16 chr1 192721599 192721826 -49942527 - L1MDa LINE L1 -4398 2142 1930 2245 99 0 46 chr1 192721829 192722153 -49942200 - AluSq SINE Alu -4 309 1 427 151 0 0 chr1 192722153 192722226 -49942127 + MSTD LTR MaLR 324 396 0 363 165 129 24 chr1 192722226 192722311 -49942042 + MLT1D LTR MaLR 76 169 -336 1100 223 72 42 chr1 192722311 192722715 -49941638 - L1MDa LINE L1 -4853 1687 1272 1759 190 3 3 chr1 192722730 192723076 -49941277 - AluJo SINE Alu 0 346 1 1857 159 7 7 chr1 192723146 192723441 -49940912 - AluJo SINE Alu -17 295 1 183 100 0 0 chr1 192723667 192723697 -49940656 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 360 270 57 57 chr1 192723728 192723887 -49940466 - L1MDa LINE L1 -6210 330 172 2012 119 25 0 chr1 192724163 192724441 -49939912 - AluSx SINE Alu -27 285 1 647 181 75 0 chr1 192724443 192724576 -49939777 + L1MA6 LINE L1 6035 6177 -123 349 310 74 69 chr1 192724686 192724902 -49939451 - L1M4 LINE L1 -3279 3103 2887 870 150 0 27 chr1 192724923 192725070 -49939283 - FLAM_C SINE Alu 0 143 1 270 229 57 16 chr1 192725082 192725204 -49939149 - L1ME LINE L1 -345 5817 5691 316 313 101 18 chr1 192725357 192725584 -49938769 - HAL1 LINE L1 -893 1850 1477 602 183 0 0 chr1 192727336 192727456 -49936897 - FLAM_A SINE Alu -6 136 17 380 339 82 0 chr1 192727551 192727722 -49936631 + MIR3 SINE MIR 17 201 -7 832 254 168 42 chr1 192728487 192728701 -49935652 - L1ME4a LINE L1 -37 6084 5898 1755 159 3 44 chr1 192728701 192729022 -49935331 - AluJo SINE Alu -4 308 1 832 254 168 42 chr1 192729022 192729307 -49935046 - L1ME4a LINE L1 -223 5898 5522 363 268 57 8 chr1 192729677 192729800 -49934553 - MER5A DNA MER1_type 0 189 61 1892 102 12 0 chr1 192729812 192730057 -49934296 - AluSx SINE Alu -15 297 50 2379 119 0 0 chr1 192730083 192730393 -49933960 - AluSx SINE Alu 0 312 3 485 236 5 133 chr1 192730533 192730736 -49933617 - MER5B DNA MER1_type 0 178 2 269 282 37 37 chr1 192731177 192731303 -49933050 - MIR SINE MIR -61 147 63 22 56 0 0 chr1 192731444 192731480 -49932873 + AT_rich Low_complexity Low_complexity 1 36 0 2378 104 7 3 chr1 192731571 192731880 -49932473 - AluSq SINE Alu -3 310 1 1766 122 8 0 chr1 192731882 192732128 -49932225 - AluSq SINE Alu -10 303 56 470 307 35 39 chr1 192732293 192732433 -49931920 - L1ME LINE L1 -651 5591 5452 1551 86 36 0 chr1 192732433 192732655 -49931698 + MER30 DNA MER1_type 1 230 0 470 307 35 39 chr1 192732655 192732838 -49931515 - L1ME LINE L1 -790 5452 5274 576 281 36 24 chr1 192733040 192733207 -49931146 + MER5B DNA MER1_type 1 169 -9 2497 90 3 0 chr1 192733310 192733621 -49930732 - AluSp SINE Alu -1 312 1 689 160 0 17 chr1 192733840 192733959 -49930394 - FLAM_A SINE Alu -18 124 8 2463 86 3 10 chr1 192734249 192734563 -49929790 - AluSq SINE Alu -1 312 1 2284 92 7 3 chr1 192735067 192735361 -49928992 + AluSx SINE Alu 1 295 -17 2214 114 0 10 chr1 192735370 192735667 -49928686 + AluSx SINE Alu 1 294 -18 1818 140 60 0 chr1 192736822 192736937 -49927416 + AluJb SINE Alu 1 108 -204 239 0 32 0 chr1 192736937 192736968 -49927385 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1818 140 60 0 chr1 192736968 192737137 -49927216 + AluJb SINE Alu 108 302 -10 1701 24 0 0 chr1 192737735 192737941 -49926412 - L1PA4 LINE L1 0 6155 5950 396 333 134 6 chr1 192739154 192739325 -49925028 - L2 LINE L2 -86 3186 2994 194 284 0 75 chr1 192739412 192739479 -49924874 - MIR SINE MIR -43 219 158 513 236 85 0 chr1 192739675 192739840 -49924513 - MER20B DNA MER1_type -31 752 574 670 227 63 132 chr1 192739868 192739915 -49924438 - MER20B DNA MER1_type -181 602 553 2072 92 0 78 chr1 192739915 192740244 -49924109 - AluSx SINE Alu 0 305 1 670 227 63 132 chr1 192740244 192740636 -49923717 - MER20B DNA MER1_type -230 553 192 298 244 58 103 chr1 192740757 192740782 -49923571 - Charlie8 DNA MER1_type -184 157 132 2248 117 3 0 chr1 192740782 192741089 -49923264 + AluSx SINE Alu 2 309 -3 298 244 58 103 chr1 192741089 192741219 -49923134 - Charlie8 DNA MER1_type -209 132 9 363 360 98 23 chr1 192741516 192741996 -49922357 - L2 LINE L2 -810 2504 1989 240 35 0 0 chr1 192742104 192742133 -49922220 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 954 120 0 0 chr1 192742134 192742259 -49922094 - FLAM_C SINE Alu -18 125 1 1903 116 7 31 chr1 192742596 192742972 -49921381 - AluSx SINE Alu 0 369 1 908 186 26 0 chr1 192742982 192743176 -49921177 - L1PA16 LINE L1 -20 6146 5948 308 317 89 0 chr1 192745465 192745588 -49918765 - LTR67 LTR ERVL -19 538 405 224 284 69 52 chr1 192745878 192745994 -49918359 + MIR3 SINE MIR 50 167 -41 846 129 0 30 chr1 192747189 192747321 -49917032 + FLAM_C SINE Alu 6 133 -10 415 291 168 6 chr1 192747489 192747668 -49916685 + MIR SINE MIR 46 253 -9 23 33 0 0 chr1 192751395 192751425 -49912928 + AT_rich Low_complexity Low_complexity 1 30 0 214 268 0 42 chr1 192752576 192752647 -49911706 + GA-rich Low_complexity Low_complexity 2 69 0 252 250 0 31 chr1 192752747 192752811 -49911542 + G-rich Low_complexity Low_complexity 2 63 0 208 217 43 0 chr1 192753054 192753100 -49911253 + L2 LINE L2 3246 3293 -20 2262 108 0 3 chr1 192754637 192754934 -49909419 - AluSx SINE Alu -16 296 1 293 315 38 33 chr1 192755039 192755223 -49909130 - L1ME LINE L1 -303 5818 5634 198 167 0 48 chr1 192756001 192756043 -49908310 + L2 LINE L2 3016 3055 -217 269 200 67 0 chr1 192756199 192756259 -49908094 + MIR SINE MIR 88 151 -57 2401 87 7 0 chr1 192756278 192756578 -49907775 - AluSp SINE Alu -11 302 1 2373 101 3 0 chr1 192756586 192756893 -49907460 - AluSp SINE Alu -5 308 1 1648 159 25 19 chr1 192756907 192757221 -49907132 - L1MC1 LINE L1 0 6333 6018 1912 157 13 22 chr1 192757221 192757534 -49906819 - AluJo SINE Alu -2 310 1 1714 186 20 10 chr1 192758800 192759096 -49905257 - AluJb SINE Alu -13 299 1 257 249 201 25 chr1 192762680 192762850 -49901503 + MIR3 SINE MIR 13 208 -54 354 175 0 0 chr1 192763687 192763750 -49900603 - MER82 DNA MER2_type -3 650 588 1884 189 0 0 chr1 192763750 192764046 -49900307 + AluJb SINE Alu 1 296 -16 182 114 0 29 chr1 192764267 192764302 -49900051 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 934 160 0 7 chr1 192764834 192764978 -49899375 - AluSx SINE Alu -150 162 20 2199 145 0 0 chr1 192765198 192765508 -49898845 - AluSx SINE Alu -2 310 1 1511 156 12 28 chr1 192766144 192766394 -49897959 - AluJo SINE Alu -66 246 1 242 162 0 0 chr1 192767989 192768026 -49896327 + MLT1B LTR MaLR 1 37 -353 680 108 200 0 chr1 192768027 192768157 -49896196 + MLT1B LTR MaLR 233 388 -2 362 370 14 46 chr1 192768516 192768735 -49895618 - MIR SINE MIR -6 256 45 430 254 34 0 chr1 192770874 192770992 -49893361 + MIR3 SINE MIR 74 195 -13 318 275 100 0 chr1 192771739 192771896 -49892457 - MIR SINE MIR -67 141 11 345 233 23 0 chr1 192772171 192772257 -49892096 + MIR3 SINE MIR 86 173 -35 1914 150 0 25 chr1 192772310 192772630 -49891723 + AluJo SINE Alu 1 312 0 560 309 114 0 chr1 192774451 192774661 -49889692 + MIR SINE MIR 29 262 0 593 194 48 0 chr1 192775332 192775456 -49888897 + MIR3 SINE MIR 66 195 -13 1270 268 172 21 chr1 192775667 192776313 -49888040 + L2 LINE L2 2298 2845 -468 2053 92 4 0 chr1 192776313 192776585 -49887768 + AluSg SINE Alu 1 273 -37 1270 268 172 21 chr1 192776585 192776602 -49887751 + L2 LINE L2 2845 2858 -455 189 0 0 0 chr1 192776602 192776623 -49887730 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1270 268 172 21 chr1 192776623 192776839 -49887514 + L2 LINE L2 2858 3313 0 361 362 23 29 chr1 192777877 192778051 -49886302 + MIR SINE MIR 90 262 0 2422 66 3 0 chr1 192779681 192779983 -49884370 + AluSp SINE Alu 7 309 -4 395 279 45 18 chr1 192780075 192780234 -49884119 + L1MC4a LINE L1 5669 5690 -473 1729 148 46 11 chr1 192780234 192780518 -49883835 - AluJb SINE Alu -6 306 13 395 279 45 18 chr1 192780518 192780596 -49883757 + L1MC4a LINE L1 5690 5764 -399 249 249 103 97 chr1 192781521 192781706 -49882647 - MER102a DNA MER1_type -30 300 115 288 366 34 11 chr1 192781853 192782028 -49882325 + L2 LINE L2 2916 3094 -178 209 409 27 0 chr1 192782207 192782317 -49882036 + L2 LINE L2 3199 3311 -2 182 336 156 0 chr1 192782912 192783040 -49881313 - MIR SINE MIR -35 227 80 184 206 0 0 chr1 192784616 192784650 -49879703 - MIR SINE MIR -112 150 117 804 167 1 0 chr1 192785619 192786744 -49877609 + (CA)n Simple_repeat Simple_repeat 1 1126 0 384 205 161 9 chr1 192787261 192787373 -49876980 - MIR SINE MIR -79 183 55 * 525 292 35 0 chr1 192787359 192787503 -49876850 - L3 LINE CR1 -3 1574 1426 652 304 48 13 chr1 192788541 192788768 -49875585 - MIR SINE MIR -10 252 18 614 283 104 13 chr1 192790123 192790353 -49874000 - MIR SINE MIR -11 251 1 274 324 58 7 chr1 192790466 192790605 -49873748 + MIR3 SINE MIR 41 186 -22 253 374 147 5 chr1 192791236 192791434 -49872919 - MIR SINE MIR 0 262 37 225 0 0 0 chr1 192791481 192791506 -49872847 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1695 176 11 3 chr1 192791506 192791790 -49872563 - AluJb SINE Alu -26 286 1 204 274 71 12 chr1 192792042 192792126 -49872227 + MIR SINE MIR 30 118 -90 890 129 0 0 chr1 192792383 192792507 -49871846 - FLAM_C SINE Alu -19 124 1 420 149 107 8 chr1 192792551 192792672 -49871681 - MER96B DNA MER1_type? 0 417 285 226 192 192 0 chr1 192792664 192792716 -49871637 + MER58A DNA MER1_type 7 68 -39 * 329 314 69 34 chr1 192793838 192794013 -49870340 - MIR SINE MIR -7 255 75 355 344 38 19 chr1 192794594 192794754 -49869599 + L3b LINE CR1 1288 1450 -133 346 295 158 21 chr1 192794829 192795033 -49869320 - MIR SINE MIR -1 261 30 213 291 220 50 chr1 192797462 192797644 -49866709 + MIR SINE MIR 20 232 -30 2066 121 0 0 chr1 192797781 192798082 -49866271 - AluSg SINE Alu 0 301 1 24 32 0 0 chr1 192798090 192798121 -49866232 + AT_rich Low_complexity Low_complexity 1 31 0 315 0 0 0 chr1 192799658 192799693 -49864660 + (CA)n Simple_repeat Simple_repeat 2 36 0 181 290 160 0 chr1 192799768 192799868 -49864485 + L3 LINE CR1 1335 1450 -127 187 264 0 110 chr1 192801459 192801550 -49862803 + MER5B DNA MER1_type 41 121 -57 180 134 15 30 chr1 192802295 192802362 -49861991 + (CGG)n Simple_repeat Simple_repeat 2 67 0 29 28 0 0 chr1 192802402 192802438 -49861915 + GC_rich Low_complexity Low_complexity 1 36 0 24 96 0 0 chr1 192802567 192802640 -49861713 + GC_rich Low_complexity Low_complexity 1 73 0 288 77 0 0 chr1 192802751 192802790 -49861563 + (TGGGGG)n Simple_repeat Simple_repeat 4 42 0 419 218 69 10 chr1 192802854 192802955 -49861398 - MIR SINE MIR -61 147 41 224 290 161 16 chr1 192804168 192804292 -49860061 - MIR SINE MIR -7 255 114 183 311 94 28 chr1 192804502 192804608 -49859745 + L2 LINE L2 2989 3101 -171 188 195 13 78 chr1 192804842 192804919 -49859434 + L3b LINE CR1 1317 1388 -195 209 222 32 32 chr1 192804984 192805047 -49859306 + CT-rich Low_complexity Low_complexity 1 63 0 602 258 33 0 chr1 192806107 192806258 -49858095 - MIR3 SINE MIR -17 191 36 2154 127 0 3 chr1 192806359 192806667 -49857686 + AluSx SINE Alu 1 307 -5 677 338 17 8 chr1 192806688 192806922 -49857431 + MIR SINE MIR 6 241 -21 495 186 51 8 chr1 192807278 192807396 -49856957 - MIR SINE MIR -29 233 111 656 227 31 0 chr1 192807413 192807576 -49856777 + MLT1I LTR MaLR 6 173 -236 322 294 39 0 chr1 192807591 192807693 -49856660 + MLT1I LTR MaLR 297 402 -7 345 310 228 0 chr1 192808272 192808469 -49855884 - MIR SINE MIR 0 262 21 1665 221 19 45 chr1 192808563 192808945 -49855408 + L1ME1 LINE L1 5663 6030 -136 1906 139 10 19 chr1 192808945 192809255 -49855098 - AluJb SINE Alu -4 308 2 1665 221 19 45 chr1 192809255 192809384 -49854969 + L1ME1 LINE L1 6030 6161 -5 218 203 0 17 chr1 192811064 192811123 -49853230 + CT-rich Low_complexity Low_complexity 3 60 0 206 351 144 14 chr1 192811123 192811345 -49853008 - L2 LINE L2 -60 3253 3003 443 327 48 0 chr1 192811563 192811731 -49852622 + MIR SINE MIR 38 213 -49 987 192 0 0 chr1 192812036 192812203 -49852150 - AluJb SINE Alu -12 300 134 2127 111 3 0 chr1 192812203 192812547 -49851806 - AluSx SINE Alu 0 312 1 247 277 216 20 chr1 192812755 192812857 -49851496 + MIR SINE MIR 34 156 -52 225 361 77 13 chr1 192813230 192813385 -49850968 - MIR SINE MIR -43 219 55 706 269 48 22 chr1 192814139 192814251 -49850102 + MIR SINE MIR 6 114 -148 2016 144 0 3 chr1 192814251 192814556 -49849797 - AluSq SINE Alu -9 304 1 706 269 48 22 chr1 192814556 192814670 -49849683 + MIR SINE MIR 114 238 -24 1675 177 47 3 chr1 192814675 192814856 -49849497 - AluJo SINE Alu 0 312 111 345 24 0 0 chr1 192814856 192814898 -49849455 + (TG)n Simple_repeat Simple_repeat 1 42 0 1675 177 47 3 chr1 192814898 192815015 -49849338 - AluJo SINE Alu -201 111 1 475 342 58 52 chr1 192815379 192815727 -49848626 - L2 LINE L2 -3 3269 2920 900 363 146 18 chr1 192815763 192816712 -49847641 - L2 LINE L2 -494 2820 1993 2113 124 0 0 chr1 192816712 192817003 -49847350 + AluSx SINE Alu 9 299 -13 900 363 146 18 chr1 192817003 192817015 -49847338 - L2 LINE L2 -1321 1993 1984 323 44 22 0 chr1 192817015 192817060 -49847293 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 900 363 146 18 chr1 192817060 192817409 -49846944 - L2 LINE L2 -1330 1984 1342 331 329 73 18 chr1 192817706 192817870 -49846483 + MIR SINE MIR 56 228 -34 661 213 129 7 chr1 192820738 192820893 -49843460 - MER5B DNA MER1_type -3 175 2 1990 129 6 16 chr1 192820956 192821289 -49843064 - AluSx SINE Alu 0 312 1 521 335 11 5 chr1 192822631 192822822 -49841531 + MIR3 SINE MIR 6 197 -11 2177 106 3 0 chr1 192823367 192823659 -49840694 - AluSg SINE Alu -17 293 1 1438 179 106 91 chr1 192823961 192824304 -49840049 + L1MC4 LINE L1 7367 7722 -320 2144 118 7 3 chr1 192824304 192824610 -49839743 + AluSx SINE Alu 1 307 -5 1438 179 106 91 chr1 192824610 192824803 -49839550 + L1MC4 LINE L1 7722 7911 -131 1902 145 3 0 chr1 192825004 192825330 -49839023 - AluSx SINE Alu 0 329 3 1874 143 31 0 chr1 192825392 192825685 -49838668 - AluSx SINE Alu -10 302 1 180 281 177 0 chr1 192826569 192826665 -49837688 - L2 LINE L2 -2 3270 3158 532 350 127 8 chr1 192828261 192828630 -49835723 + L3 LINE CR1 970 1382 -195 437 299 13 32 chr1 192828627 192828781 -49835572 + MIR SINE MIR 18 168 -94 * 322 204 159 0 chr1 192828863 192828951 -49835402 - MER5A DNA MER1_type -78 111 10 335 345 148 0 chr1 192828960 192829102 -49835251 + L3 LINE CR1 1412 1574 -3 804 200 7 0 chr1 192831176 192831331 -49833022 - MER45A DNA AcHobo -22 156 1 200 289 41 41 chr1 192833002 192833099 -49831254 - L3 LINE CR1 -1269 308 212 223 292 0 42 chr1 192833418 192833490 -49830863 + GA-rich Low_complexity Low_complexity 1 69 0 579 257 28 34 chr1 192834171 192834350 -49830003 + MER5B DNA MER1_type 1 178 0 890 194 54 0 chr1 192834358 192834544 -49829809 - MER3 DNA MER1_type 0 209 14 434 70 14 0 chr1 192834887 192834958 -49829395 + (CA)n Simple_repeat Simple_repeat 2 73 0 1533 224 139 15 chr1 192835740 192836443 -49827910 + L2 LINE L2 2511 3313 0 825 118 0 31 chr1 192836537 192836664 -49827689 + AluJb SINE Alu 7 129 -183 329 343 60 60 chr1 192836666 192837213 -49827140 + L2 LINE L2 2698 3272 0 213 345 126 26 chr1 192839224 192839415 -49824938 + L2 LINE L2 3093 3302 -11 180 0 0 0 chr1 192841379 192841399 -49822954 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 342 91 0 0 chr1 192842026 192842081 -49822272 - L1PA2 LINE L1 -3 6152 6098 1920 135 35 0 chr1 192842150 192842439 -49821914 - AluSx SINE Alu -12 300 2 246 314 0 19 chr1 192842507 192842612 -49821741 - MIR SINE MIR -87 121 19 267 324 56 0 chr1 192842976 192843084 -49821269 - L2 LINE L2 0 3272 3159 239 194 14 83 chr1 192843332 192843404 -49820949 + L2 LINE L2 3206 3272 0 199 277 0 0 chr1 192845425 192845472 -49818881 + L2 LINE L2 3137 3183 -89 2410 81 3 0 chr1 192847081 192847391 -49816962 - AluSx SINE Alu -1 311 1 742 178 0 16 chr1 192847721 192847850 -49816503 + FLAM_A SINE Alu 8 134 -8 2383 90 3 0 chr1 192848059 192848370 -49815983 + AluSp SINE Alu 1 312 -1 594 281 36 24 chr1 192848473 192848640 -49815713 - MER5B DNA MER1_type -9 169 1 446 308 29 33 chr1 192848843 192849025 -49815328 + L1MC/D LINE L1 5275 5452 -790 1657 86 36 0 chr1 192849025 192849247 -49815106 - MER30 DNA MER1_type 0 230 1 446 308 29 33 chr1 192849247 192849387 -49814966 + L1MC/D LINE L1 5452 5591 -651 1681 122 8 0 chr1 192849552 192849798 -49814555 + AluSq SINE Alu 56 303 -10 1870 102 8 4 chr1 192849800 192850054 -49814299 + AluSq SINE Alu 1 255 -58 1130 186 16 16 chr1 192850062 192850304 -49814049 + AluSg SINE Alu 64 305 -5 453 160 21 222 chr1 192850304 192850498 -49813855 + L1MC4 LINE L1 7757 7911 -131 1902 145 3 0 chr1 192850699 192851025 -49813328 - AluSx SINE Alu 0 329 3 1874 143 31 0 chr1 192851087 192851380 -49812973 - AluSx SINE Alu -10 302 1 180 281 177 0 chr1 192852264 192852360 -49811993 - L2 LINE L2 -2 3270 3158 532 350 127 8 chr1 192853956 192854325 -49810028 + L3 LINE CR1 970 1382 -195 437 299 13 32 chr1 192854322 192854476 -49809877 + MIR SINE MIR 18 168 -94 * 322 204 159 0 chr1 192854558 192854646 -49809707 - MER5A DNA MER1_type -78 111 10 335 345 148 0 chr1 192854655 192854797 -49809556 + L3 LINE CR1 1412 1574 -3 804 200 7 0 chr1 192856871 192857026 -49807327 - MER45A DNA AcHobo -22 156 1 200 289 41 41 chr1 192858697 192858794 -49805559 - L3 LINE CR1 -1269 308 212 223 292 0 42 chr1 192859113 192859185 -49805168 + GA-rich Low_complexity Low_complexity 1 69 0 579 257 28 34 chr1 192859866 192860045 -49804308 + MER5B DNA MER1_type 1 178 0 890 194 54 0 chr1 192860053 192860239 -49804114 - MER3 DNA MER1_type 0 209 14 434 70 14 0 chr1 192860582 192860653 -49803700 + (CA)n Simple_repeat Simple_repeat 2 73 0 1533 224 139 15 chr1 192861435 192862138 -49802215 + L2 LINE L2 2511 3313 0 825 118 0 31 chr1 192862232 192862359 -49801994 + AluJb SINE Alu 7 129 -183 329 343 60 60 chr1 192862361 192862908 -49801445 + L2 LINE L2 2698 3272 0 2073 129 0 3 chr1 192864184 192864486 -49799867 + AluSc SINE Alu 2 302 -7 398 279 12 85 chr1 192866345 192866510 -49797843 + MIR3 SINE MIR 42 194 -14 285 171 301 24 chr1 192867468 192867591 -49796762 - L2 LINE L2 0 3272 3116 228 159 0 23 chr1 192868086 192868130 -49796223 + L2 LINE L2 3270 3312 -1 396 301 85 20 chr1 192868504 192868657 -49795696 - MIR SINE MIR -66 196 34 302 297 54 9 chr1 192869687 192869798 -49794555 + MER5A DNA MER1_type 5 120 -69 1996 129 3 0 chr1 192871387 192871673 -49792680 + AluSx SINE Alu 12 298 -14 343 304 167 27 chr1 192872244 192872501 -49791852 - L2 LINE L2 -31 3241 2949 314 352 35 21 chr1 192872914 192873059 -49791294 + L2 LINE L2 3107 3253 -19 183 156 0 0 chr1 192873189 192873221 -49791132 + T-rich Low_complexity Low_complexity 1 32 0 1399 155 103 4 chr1 192873836 192874088 -49790265 - AluJb SINE Alu -34 278 2 207 0 0 0 chr1 192874107 192874130 -49790223 + (A)n Simple_repeat Simple_repeat 1 23 0 1142 317 102 39 chr1 192874254 192874431 -49789922 + L2 LINE L2 1493 1657 -1657 2320 87 0 0 chr1 192874431 192874731 -49789622 + AluSc SINE Alu 1 300 -9 1142 317 102 39 chr1 192874731 192875116 -49789237 + L2 LINE L2 1657 2016 -1298 3101 151 12 30 chr1 192875116 192875620 -49788733 + LTR42 LTR ERVL 1 495 0 1142 317 102 39 chr1 192875620 192875980 -49788373 + L2 LINE L2 2016 2474 -840 920 295 93 70 chr1 192876163 192877010 -49787343 - L1MEd LINE L1 -5245 874 8 230 370 34 8 chr1 192877104 192877223 -49787130 + L2 LINE L2 2683 2804 -510 1418 343 46 60 chr1 192877223 192877612 -49786741 + MSTB LTR MaLR 1 385 -41 2437 67 0 0 chr1 192877612 192877909 -49786444 - AluSc SINE Alu -12 297 1 1418 343 46 60 chr1 192877909 192877951 -49786402 + MSTB LTR MaLR 385 426 0 275 268 38 70 chr1 192878204 192878361 -49785992 + L2 LINE L2 3159 3310 -3 208 330 92 18 chr1 192879073 192879182 -49785171 + MIR SINE MIR 126 242 -20 591 176 28 0 chr1 192879370 192879478 -49784875 - FLAM_A SINE Alu -7 135 25 255 272 276 0 chr1 192879481 192879705 -49784648 + L1MC/D LINE L1 5609 5883 -309 343 230 11 11 chr1 192879754 192879841 -49784512 - L2 LINE L2 0 3313 3227 1714 174 109 18 chr1 192881818 192881939 -49782414 - Charlie4a DNA MER1_type -1454 507 398 1894 173 74 0 chr1 192881939 192882263 -49782090 - MER7A DNA MER2_type 0 346 1 1714 174 109 18 chr1 192882263 192882589 -49781764 - Charlie4a DNA MER1_type -1563 398 19 1122 244 4 0 chr1 192882723 192882969 -49781384 - MIR SINE MIR 0 262 16 218 236 18 18 chr1 192883262 192883372 -49780981 + CT-rich Low_complexity Low_complexity 2 111 0 262 268 50 89 chr1 192883871 192884050 -49780303 + MIR SINE MIR 84 255 -7 523 239 29 14 chr1 192884121 192884259 -49780094 + MIR SINE MIR 11 150 -112 309 229 276 9 chr1 192884336 192884441 -49779912 - MIR SINE MIR -10 252 120 2167 185 4 32 chr1 192886221 192886718 -49777635 + Charlie1b DNA MER1_type 41 523 0 225 368 53 7 chr1 192887804 192887956 -49776397 + MER117 DNA MER1_type 2 160 -37 879 229 159 13 chr1 192888442 192888669 -49775684 + MIR SINE MIR 3 262 0 1715 168 111 0 chr1 192888691 192889042 -49775311 + MLT1B LTR MaLR 1 390 0 696 266 68 75 chr1 192889643 192890042 -49774311 + L2 LINE L2 2857 3252 -61 239 258 0 65 chr1 192890658 192890694 -49773659 - L1MC4 LINE L1 -1308 6734 6697 198 0 0 0 chr1 192890694 192890716 -49773637 + (TG)n Simple_repeat Simple_repeat 2 23 0 239 258 0 65 chr1 192890716 192890772 -49773581 - L1MC4 LINE L1 -1345 6697 6648 532 291 77 5 chr1 192891717 192891928 -49772425 + MIR SINE MIR 34 262 0 300 347 183 4 chr1 192892068 192892615 -49771738 + L2 LINE L2 2328 2972 -342 906 262 99 0 chr1 192893015 192893328 -49771025 + L2 LINE L2 2927 3270 -43 351 302 43 0 chr1 192893366 192893482 -49770871 + MER5C DNA MER1_type 1 121 -203 287 276 13 0 chr1 192893615 192893691 -49770662 + MER5C DNA MER1_type 248 324 0 259 188 0 0 chr1 192893709 192893757 -49770596 + L2 LINE L2 3224 3271 -1 329 262 84 9 chr1 192895889 192895996 -49768357 - MIR SINE MIR 0 262 148 713 228 62 0 chr1 192897759 192897921 -49766432 - MIR SINE MIR -84 178 7 1435 94 10 5 chr1 192898092 192898293 -49766060 - AluSc SINE Alu -107 202 1 2224 60 0 11 chr1 192899268 192899581 -49764772 - AluY SINE Alu 0 310 1 245 50 0 50 chr1 192900602 192900642 -49763711 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 252 281 169 11 chr1 192902751 192902840 -49761513 + MIR SINE MIR 25 127 -81 405 0 0 0 chr1 192902914 192902959 -49761394 + (CA)n Simple_repeat Simple_repeat 2 46 0 569 172 186 0 chr1 192902962 192903107 -49761246 + MER112 DNA MER1_type 88 259 -1 230 239 42 14 chr1 192903132 192903203 -49761150 + MIR SINE MIR 184 256 -6 264 223 0 75 chr1 192907427 192907521 -49756832 - L3 LINE CR1 -312 1265 1179 194 343 0 0 chr1 192908288 192908355 -49755998 + L2 LINE L2 3205 3271 -1 254 293 35 9 chr1 192908907 192909023 -49755330 + MER117 DNA MER1_type 1 119 -78 364 197 42 134 chr1 192911888 192912030 -49752323 - MER103 DNA DNA -17 149 21 627 96 0 0 chr1 192912158 192912241 -49752112 + AluJ/FLAM SINE Alu 12 94 -218 537 275 60 5 chr1 192912407 192912607 -49751746 - MIR SINE MIR -50 212 2 241 358 113 31 chr1 192913027 192913443 -49750910 + L2 LINE L2 2255 2704 -610 776 215 37 0 chr1 192913553 192913716 -49750637 - MER45C DNA AcHobo -7 946 778 870 312 4 32 chr1 192913755 192914034 -49750319 - MER45C DNA AcHobo -284 669 399 1151 259 25 0 chr1 192914074 192914348 -49750005 - MER45C DNA AcHobo -672 281 1 444 324 114 25 chr1 192914355 192914636 -49749717 + L2 LINE L2 3006 3311 -2 1755 162 14 3 chr1 192915167 192915463 -49748890 - AluJb SINE Alu -12 300 2 643 278 28 48 chr1 192916014 192916027 -49748326 + MIR SINE MIR 20 32 -230 1982 125 14 0 chr1 192916027 192916323 -49748030 + AluSx SINE Alu 1 300 -12 643 278 28 48 chr1 192916323 192916557 -49747796 + MIR SINE MIR 32 262 0 411 270 31 86 chr1 192916538 192916701 -49747652 + MIR3 SINE MIR 49 202 -6 * 407 291 106 0 chr1 192916875 192917016 -49747337 + MIR SINE MIR 101 256 -6 192 77 0 0 chr1 192918968 192918994 -49745359 + (TCC)n Simple_repeat Simple_repeat 2 27 0 1801 149 0 33 chr1 192920177 192920479 -49743874 + AluJb SINE Alu 1 292 -20 1844 131 11 7 chr1 192920499 192920781 -49743572 + AluSx SINE Alu 25 307 -5 26 101 0 0 chr1 192921814 192921903 -49742450 + GC_rich Low_complexity Low_complexity 1 89 0 261 281 37 0 chr1 192923476 192923558 -49740795 + L2 LINE L2 3223 3307 -6 2154 128 7 0 chr1 192924135 192924425 -49739928 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr1 192924947 192924968 -49739385 + AT_rich Low_complexity Low_complexity 1 21 0 2003 139 0 16 chr1 192925179 192925489 -49738864 + AluJb SINE Alu 1 305 -7 376 307 85 0 chr1 192926400 192926553 -49737800 - MIR SINE MIR -17 245 80 596 261 126 5 chr1 192926776 192926991 -49737362 + MIR SINE MIR 22 262 0 637 241 86 6 chr1 192927412 192927586 -49736767 - MIR SINE MIR -21 241 54 597 244 113 33 chr1 192929031 192929244 -49735109 + MIR SINE MIR 18 247 -15 251 320 82 8 chr1 192929627 192929749 -49734604 + L2 LINE L2 3165 3295 -18 280 279 78 62 chr1 192930048 192930126 -49734227 - MIR SINE MIR -13 249 174 1056 201 141 19 chr1 192930126 192930389 -49733964 - AluJo SINE Alu -7 295 1 280 279 78 62 chr1 192930389 192930489 -49733864 - MIR SINE MIR -88 174 68 647 318 84 0 chr1 192930497 192930736 -49733617 - MIR SINE MIR 0 262 4 276 290 9 0 chr1 192931850 192931957 -49732396 - MIR3 SINE MIR -20 188 81 527 313 107 0 chr1 192932248 192932481 -49731872 - MIR SINE MIR -4 258 1 282 271 83 0 chr1 192932994 192933090 -49731263 - MIR SINE MIR -76 132 29 675 285 64 4 chr1 192933419 192933654 -49730699 - MIR SINE MIR 0 262 14 223 276 191 19 chr1 192933760 192933865 -49730488 - MIR SINE MIR -69 139 17 287 284 130 35 chr1 192934214 192934554 -49729799 - L2 LINE L2 -490 2824 2404 2259 105 3 0 chr1 192934569 192934854 -49729499 + AluSx SINE Alu 3 288 -24 343 316 69 40 chr1 192934861 192935108 -49729245 - L1MCa LINE L1 -4258 2168 1915 197 141 56 0 chr1 192935108 192935179 -49729174 + (TA)n Simple_repeat Simple_repeat 2 76 0 234 328 100 22 chr1 192935414 192935685 -49728668 - L2 LINE L2 -1219 2095 1804 180 288 68 0 chr1 192937504 192937563 -49726790 + L3b LINE CR1 1210 1272 -311 1738 190 3 3 chr1 192937638 192937943 -49726410 + AluJb SINE Alu 1 305 -7 185 349 15 0 chr1 192938332 192938398 -49725955 + L2 LINE L2 3246 3312 -1 459 335 111 44 chr1 192939059 192939824 -49724529 + L2 LINE L2 2113 2928 -386 262 286 97 32 chr1 192939892 192940046 -49724307 + L2 LINE L2 3088 3251 -21 335 207 241 9 chr1 192940447 192940563 -49723790 + MIR3 SINE MIR 47 189 -19 500 302 43 71 chr1 192942329 192942584 -49721769 - MIR SINE MIR 0 262 15 534 319 108 50 chr1 192942826 192943262 -49721091 - L3 LINE CR1 -54 1523 1063 228 364 0 36 chr1 192943263 192943373 -49720980 + MIR SINE MIR 107 212 -50 234 0 0 0 chr1 192944118 192944144 -49720209 + (TG)n Simple_repeat Simple_repeat 2 27 0 257 204 102 23 chr1 192944659 192944747 -49719606 + MER46A DNA MER2_type 8 102 -134 * 4606 119 57 5 chr1 192944718 192945515 -49718838 + MER46A DNA MER2_type 1869 211 -25 561 244 50 61 chr1 192947103 192947283 -49717070 + MIR3 SINE MIR 23 200 -8 268 321 0 12 chr1 192947450 192947534 -49716819 + L2 LINE L2 3186 3268 -4 490 233 15 147 chr1 192947598 192947864 -49716489 + MIR SINE MIR 20 250 -12 1484 239 41 74 chr1 192948915 192949548 -49714805 - LTR9 LTR ERV1 0 612 1 451 305 33 56 chr1 192949579 192949792 -49714561 - L2 LINE L2 -46 3226 3019 2006 201 32 20 chr1 192949822 192950319 -49714034 + MLT1D LTR MaLR 2 504 -1 333 0 0 0 chr1 192951441 192951478 -49712875 + (CA)n Simple_repeat Simple_repeat 2 38 0 668 176 15 23 chr1 192951534 192951665 -49712688 - FLAM_C SINE Alu 0 133 4 276 193 18 0 chr1 192952204 192952261 -49712092 - Charlie1b DNA MER1_type -1 522 465 2411 86 3 0 chr1 192952264 192952556 -49711797 + AluSp SINE Alu 1 293 -20 24 0 0 0 chr1 192952575 192952599 -49711754 + AT_rich Low_complexity Low_complexity 1 24 0 2468 71 0 0 chr1 192952611 192952908 -49711445 + AluY SINE Alu 1 297 -14 1708 213 65 7 chr1 192952908 192953354 -49710999 - Charlie1b DNA MER1_type -51 472 1 285 258 73 33 chr1 192953521 192953672 -49710681 + MER103 DNA DNA 3 159 -7 186 240 40 0 chr1 192953983 192954033 -49710320 - MIR SINE MIR 0 262 211 4267 156 73 58 chr1 192954041 192954129 -49710224 + L1MD1 LINE L1 4755 4840 -1402 1482 140 163 23 chr1 192954129 192954393 -49709960 - AluJo SINE Alu -11 301 1 4267 156 73 58 chr1 192954393 192954960 -49709393 + L1MD1 LINE L1 4840 5397 -845 1977 171 0 3 chr1 192954960 192955264 -49709089 + AluJb SINE Alu 1 303 -9 2293 121 0 6 chr1 192955264 192955578 -49708775 + AluSx SINE Alu 1 312 0 4267 156 73 58 chr1 192955578 192956389 -49707964 + L1MD1 LINE L1 5396 6241 -1 490 175 0 0 chr1 192956447 192956527 -49707826 + MER116 DNA Mariner 1 80 0 * 843 306 21 39 chr1 192956527 192956901 -49707452 - MLT1K LTR MaLR -54 534 168 261 0 0 0 chr1 192957107 192957136 -49707217 + (TA)n Simple_repeat Simple_repeat 2 30 0 2371 98 3 0 chr1 192957385 192957691 -49706662 - AluSg SINE Alu -3 307 1 2908 117 7 7 chr1 192957805 192958251 -49706102 + MER83 LTR ERV1 3 448 0 2080 143 0 3 chr1 192958318 192958612 -49705741 - AluSx SINE Alu -15 297 5 252 244 12 37 chr1 192958698 192958780 -49705573 - L1ME3A LINE L1 0 6170 6091 395 317 34 16 chr1 192958792 192958949 -49705404 + MIR3 SINE MIR 30 184 -48 3739 156 47 21 chr1 192959091 192959791 -49704562 - LTR8A LTR ERV1 0 727 10 1695 191 57 19 chr1 192959825 192960243 -49704110 - L1ME3A LINE L1 -115 6055 5622 2218 141 0 0 chr1 192960391 192960695 -49703658 + AluSx SINE Alu 1 304 -8 1213 164 19 47 chr1 192960736 192960992 -49703361 - AluJo SINE Alu -4 308 60 648 307 133 29 chr1 192961015 192961602 -49702751 + L3 LINE CR1 643 1290 -287 337 340 14 28 chr1 192961618 192961759 -49702594 + L3 LINE CR1 1436 1574 -3 276 307 34 0 chr1 192961757 192961845 -49702508 + MIR3 SINE MIR 78 168 -40 * 256 303 57 25 chr1 192961926 192962048 -49702305 - LTR67 LTR ERVL -5 552 427 246 276 17 0 chr1 192962543 192962601 -49701752 - L2 LINE L2 -7 3265 3207 388 278 118 75 chr1 192962847 192963247 -49701106 + L1 LINE L1 2818 3280 -2866 188 35 35 0 chr1 192964204 192964233 -49700120 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 252 0 0 0 chr1 192964381 192964409 -49699944 + (T)n Simple_repeat Simple_repeat 1 28 0 409 204 29 19 chr1 192964458 192964561 -49699792 - MIR3 SINE MIR -31 177 74 648 258 49 41 chr1 192965117 192965361 -49698992 - MIR SINE MIR -3 259 14 958 234 32 5 chr1 192966145 192966363 -49697990 - MER58A DNA MER1_type 0 224 1 2193 126 3 0 chr1 192966612 192966913 -49697440 - AluSx SINE Alu -10 302 1 367 278 126 100 chr1 192967225 192967574 -49696779 + L2 LINE L2 2915 3272 0 650 130 0 26 chr1 192967945 192968060 -49696293 + FRAM SINE Alu 40 151 -25 189 0 0 0 chr1 192968060 192968081 -49696272 + (CATA)n Simple_repeat Simple_repeat 2 22 0 360 0 0 0 chr1 192968099 192968139 -49696214 + (TG)n Simple_repeat Simple_repeat 1 40 0 524 55 0 14 chr1 192970125 192970198 -49694155 + (TG)n Simple_repeat Simple_repeat 2 73 0 2225 102 14 7 chr1 192970439 192970734 -49693619 + AluSg SINE Alu 1 297 -13 1641 222 47 13 chr1 192970959 192971342 -49693011 + MSTD LTR MaLR 1 396 0 190 288 138 62 chr1 192971939 192972099 -49692254 - L2 LINE L2 -1 3312 3141 * 1305 249 34 11 chr1 192972098 192972479 -49691874 + L2 LINE L2 2503 2892 -422 290 273 34 0 chr1 192972592 192972680 -49691673 - MIR SINE MIR -105 157 67 563 101 0 11 chr1 192973769 192973858 -49690495 + (TTC)n Simple_repeat Simple_repeat 2 89 0 237 216 15 41 chr1 192973863 192973950 -49690403 + CT-rich Low_complexity Low_complexity 1 84 0 365 255 55 106 chr1 192974023 192974264 -49690089 + MIR SINE MIR 14 248 -14 1710 133 60 3 chr1 192974955 192975240 -49689113 - AluSx SINE Alu -11 301 1 195 143 167 0 chr1 192975567 192975609 -49688744 - L2 LINE L2 -73 3240 3192 212 333 67 8 chr1 192976663 192976783 -49687570 + L2 LINE L2 2661 2787 -527 498 315 51 0 chr1 192978633 192978811 -49685542 + MIR SINE MIR 34 220 -42 256 235 62 49 chr1 192979043 192979124 -49685229 + MIR3 SINE MIR 79 160 -48 1048 248 12 8 chr1 192979135 192979385 -49684968 + MIR SINE MIR 12 262 0 203 214 0 0 chr1 192979413 192979455 -49684898 + MIR3 SINE MIR 156 197 -11 215 361 0 0 chr1 192980342 192980403 -49683950 - MIR3 SINE MIR -1 207 147 1770 154 7 10 chr1 192980653 192980952 -49683401 - AluSc SINE Alu -11 298 1 712 177 0 0 chr1 192981245 192981358 -49682995 + FLAM_C SINE Alu 5 117 -16 327 276 164 37 chr1 192981688 192981902 -49682451 + L2 LINE L2 2640 2880 -434 * 464 272 26 84 chr1 192981896 192982087 -49682266 + L2 LINE L2 3092 3271 -1 230 203 31 16 chr1 192982936 192983000 -49681353 + MIR3 SINE MIR 133 197 -11 207 182 0 23 chr1 192983044 192983088 -49681265 + G-rich Low_complexity Low_complexity 2 44 0 2169 134 3 10 chr1 192985729 192986064 -49678289 - AluSx SINE Alu 0 312 1 2347 105 0 0 chr1 192987459 192987764 -49676589 - AluSx SINE Alu -7 305 1 23 0 0 0 chr1 192988070 192988093 -49676260 + AT_rich Low_complexity Low_complexity 1 23 0 786 247 52 40 chr1 192988502 192988668 -49675685 + MIR SINE MIR 4 175 -87 2194 118 3 0 chr1 192988668 192988957 -49675396 - AluSx SINE Alu -22 290 1 786 247 52 40 chr1 192988957 192989041 -49675312 + MIR SINE MIR 175 257 -5 658 249 64 79 chr1 192989058 192989323 -49675030 - MIR SINE MIR 0 262 2 334 306 65 19 chr1 192989373 192989481 -49674872 + L2 LINE L2 3125 3237 -35 249 281 101 11 chr1 192989886 192989975 -49674378 + MIR SINE MIR 44 140 -68 584 293 64 67 chr1 192990153 192990437 -49673916 - MLT1J LTR MaLR -8 503 220 2199 116 0 19 chr1 192990437 192990747 -49673606 - AluSx SINE Alu -8 304 1 1899 137 38 10 chr1 192990747 192991039 -49673314 - AluJo SINE Alu -12 300 1 584 293 64 67 chr1 192991039 192991159 -49673194 - MLT1J LTR MaLR -289 222 99 239 193 35 35 chr1 192991108 192991165 -49673188 - LTR67 LTR ERVL -404 153 97 * 448 317 73 0 chr1 192991240 192991404 -49672949 + MER102b DNA MER1_type 166 341 0 243 250 131 24 chr1 192992142 192992226 -49672127 + MIR SINE MIR 58 150 -58 586 276 29 6 chr1 192992905 192993079 -49671274 + MIR SINE MIR 47 224 -38 2580 71 0 0 chr1 192993132 192993442 -49670911 - AluY SINE Alu -1 310 1 382 270 141 72 chr1 192993448 192993711 -49670642 - L3b LINE CR1 -116 1467 1187 230 280 0 0 chr1 192993717 192993767 -49670586 + L2 LINE L2 3255 3304 -9 531 266 23 0 chr1 192994586 192994714 -49669639 + MIR SINE MIR 61 191 -71 219 214 266 7 chr1 192994723 192994877 -49669476 + L2 LINE L2 2809 3002 -311 235 44 44 44 chr1 192994985 192995030 -49669323 + (TTTC)n Simple_repeat Simple_repeat 4 48 0 438 274 45 54 chr1 192995042 192995094 -49669259 + L2 LINE L2 3077 3128 -185 2015 117 4 4 chr1 192995094 192995367 -49668986 - AluSx SINE Alu -39 273 1 438 274 45 54 chr1 192995367 192995537 -49668816 + L2 LINE L2 3128 3297 -16 459 280 90 21 chr1 192996926 192997115 -49667238 + MIR SINE MIR 20 221 -41 431 278 62 26 chr1 192997161 192997355 -49666998 - MIR3 SINE MIR -6 202 2 469 217 127 0 chr1 193007185 193007342 -49657011 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 319 191 105 0 chr1 193007369 193007521 -49656832 + (AAGTG)n Simple_repeat Simple_repeat 5 172 0 367 192 102 42 chr1 193007547 193007714 -49656639 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 * 383 221 127 0 chr1 193007681 193007839 -49656514 + (GAATG)n Simple_repeat Simple_repeat 2 179 0 317 208 91 0 chr1 193007851 193008005 -49656348 + (AAGTG)n Simple_repeat Simple_repeat 5 172 0 210 216 99 6 chr1 193008021 193008183 -49656170 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 206 202 113 0 chr1 193008209 193008333 -49656020 + (GAATG)n Simple_repeat Simple_repeat 1 138 0 248 195 92 35 chr1 193008334 193008421 -49655932 + (GAGTG)n Simple_repeat Simple_repeat 1 92 0 211 217 105 0 chr1 193008422 193008574 -49655779 + (AAGTG)n Simple_repeat Simple_repeat 5 172 0 358 186 124 0 chr1 193008574 193008687 -49655666 + (GAATG)n Simple_repeat Simple_repeat 1 127 0 258 188 121 0 chr1 193008688 193008837 -49655516 + (GAGTG)n Simple_repeat Simple_repeat 1 167 0 * 309 185 115 0 chr1 193008823 193008980 -49655373 + (AAGTG)n Simple_repeat Simple_repeat 5 179 0 23 33 0 0 chr1 193009756 193009786 -49654567 + AT_rich Low_complexity Low_complexity 1 30 0 10641 54 3 9 chr1 193010552 193012578 -49651775 + L1PA6 LINE L1 3994 6003 -151 768 294 34 34 chr1 193012670 193012990 -49651363 + L3 LINE CR1 1036 1355 -222 878 249 84 38 chr1 193013084 193013558 -49650795 + L1MEc LINE L1 1068 1563 -5044 509 203 17 8 chr1 193013552 193013670 -49650683 + L1M4 LINE L1 3497 3615 -2531 * 360 302 137 13 chr1 193013715 193013891 -49650462 + L1MEc LINE L1 1412 1761 -4846 43047 34 1 4 chr1 193013896 193020067 -49644286 + L1PA3 LINE L1 2 6155 0 1042 270 56 15 chr1 193020036 193020502 -49643851 + L1MEc LINE L1 3131 3615 -2531 * 599 255 109 4 chr1 193020507 193020754 -49643599 + L1M4 LINE L1 4812 5084 -1062 267 276 138 0 chr1 193020758 193020845 -49643508 - MIR SINE MIR -114 148 50 9410 55 4 6 chr1 193020865 193023087 -49641266 - L1PA6 LINE L1 -1 6153 3951 329 328 82 10 chr1 193023414 193023609 -49640744 + L2 LINE L2 2891 3099 -173 2367 112 0 6 chr1 193026445 193026759 -49637594 + AluSq SINE Alu 2 313 0 184 267 50 50 chr1 193026807 193026867 -49637486 - MIR SINE MIR -116 92 33 1630 79 0 0 chr1 193028561 193028763 -49635590 - AluY SINE Alu -12 299 98 570 199 113 81 chr1 193030061 193030160 -49634193 - MIR SINE MIR -70 192 98 2110 98 3 14 chr1 193030160 193030484 -49633869 + AluSx SINE Alu 1 321 0 570 199 113 81 chr1 193030484 193030569 -49633784 - MIR SINE MIR -164 98 1 343 284 37 52 chr1 193031399 193031533 -49632820 - MIR3 SINE MIR -67 141 10 583 290 80 27 chr1 193031748 193031972 -49632381 + MIR SINE MIR 21 256 -6 986 185 17 6 chr1 193032913 193033086 -49631267 - MER5B DNA MER1_type -3 175 1 472 255 163 7 chr1 193033094 193033247 -49631106 - MER5A DNA MER1_type 0 189 13 1732 182 14 0 chr1 193033364 193033655 -49630698 + AluJo SINE Alu 13 307 -5 661 178 21 12 chr1 193033667 193033902 -49630451 + GA-rich Low_complexity Low_complexity 1 236 0 256 343 143 0 chr1 193035067 193035172 -49629181 + L2 LINE L2 3153 3272 0 1007 195 0 0 chr1 193035335 193035504 -49628849 - FRAM SINE Alu 0 176 8 336 262 28 37 chr1 193036027 193036134 -49628219 + MIR SINE MIR 17 122 -86 278 238 183 56 chr1 193036199 193036325 -49628028 - MIR3 SINE MIR -53 155 14 350 303 57 0 chr1 193036483 193036605 -49627748 - MIR SINE MIR -59 149 21 604 154 8 26 chr1 193036714 193036831 -49627522 - MER20 DNA MER1_type -62 157 43 383 269 27 40 chr1 193039417 193039566 -49624787 + L3b LINE CR1 1306 1452 -131 231 88 0 0 chr1 193039648 193039682 -49624671 + (CAGGG)n Simple_repeat Simple_repeat 3 36 0 692 272 101 14 chr1 193039940 193040157 -49624196 - MIR SINE MIR -17 245 10 37822 43 3 4 chr1 193043089 193047941 -49616412 - L1P LINE L1 -1300 4846 2 358 324 119 6 chr1 193047946 193048122 -49616231 - L1MEc LINE L1 -4846 1550 1355 514 204 18 9 chr1 193048167 193048280 -49616073 - L1M4 LINE L1 -2531 3615 3502 * 1310 258 71 29 chr1 193048279 193048930 -49615423 - L1MEc LINE L1 -5044 1352 675 613 222 16 26 chr1 193049007 193049196 -49615157 - L1MEc LINE L1 -5928 277 91 742 310 71 54 chr1 193049229 193050336 -49614017 - L1M4 LINE L1 -960 5186 4061 351 315 69 0 chr1 193050361 193050491 -49613862 + L2 LINE L2 3122 3260 -12 364 353 18 18 chr1 193050772 193050939 -49613414 + L1ME3A LINE L1 4891 5057 -1089 482 309 40 60 chr1 193051193 193051442 -49612911 + L1ME3A LINE L1 5406 5649 -472 301 290 38 21 chr1 193051581 193051819 -49612534 + L1ME3 LINE L1 2821 3062 -3084 858 312 113 6 chr1 193051836 193052173 -49612180 + MLT1J2 LTR MaLR 71 443 -7 906 295 87 40 chr1 193052189 193052684 -49611669 + L1ME3 LINE L1 3080 3631 -2515 1857 199 5 59 chr1 193052684 193053075 -49611278 + MLT1A2 LTR MaLR 1 370 -4 906 295 87 40 chr1 193053075 193053403 -49610950 + L1ME3 LINE L1 3631 3942 -2204 699 231 36 68 chr1 193053414 193053635 -49610718 + MIR SINE MIR 7 220 -42 2297 279 84 47 chr1 193053664 193055274 -49609079 + L1ME3 LINE L1 3942 5639 -523 2313 99 10 0 chr1 193055274 193055576 -49608777 - AluSg SINE Alu -5 305 1 2297 279 84 47 chr1 193055576 193055902 -49608451 + L1ME3 LINE L1 5639 5951 -211 382 294 67 89 chr1 193055909 193056191 -49608162 + L1ME3A LINE L1 5894 6169 -1 991 242 49 74 chr1 193057021 193057426 -49606927 + L2 LINE L2 2919 3313 0 2784 110 44 2 chr1 193057433 193057842 -49606511 - MSTC LTR MaLR 0 428 3 511 291 126 11 chr1 193057858 193058040 -49606313 + MIR SINE MIR 26 228 -34 188 294 104 43 chr1 193058695 193058858 -49605495 + MIR SINE MIR 15 187 -75 548 327 45 54 chr1 193059077 193059521 -49604832 - L2 LINE L2 0 3272 2833 358 289 127 7 chr1 193060220 193060362 -49603991 + MIR SINE MIR 102 260 -2 294 292 149 6 chr1 193060647 193060808 -49603545 + MIR3 SINE MIR 18 201 -7 264 77 0 0 chr1 193061696 193061735 -49602618 + (CAGCC)n Simple_repeat Simple_repeat 3 41 0 367 319 113 0 chr1 193061790 193061931 -49602422 - MIR3 SINE MIR -42 166 10 419 223 95 27 chr1 193061989 193062137 -49602216 + MIR SINE MIR 31 188 -74 284 281 64 29 chr1 193063499 193063670 -49600683 + (AAGTG)n Simple_repeat Simple_repeat 1 177 0 * 429 224 135 0 chr1 193063583 193063739 -49600614 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 425 231 113 0 chr1 193063677 193063837 -49600516 + (GAATG)n Simple_repeat Simple_repeat 1 178 0 * 465 210 127 0 chr1 193063802 193063959 -49600394 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 394 217 0 53 chr1 193063940 193064129 -49600224 + GA-rich Low_complexity Low_complexity 1 179 0 * 405 166 0 64 chr1 193064014 193064201 -49600152 + (TGAG)n Simple_repeat Simple_repeat 2 176 0 * 438 200 109 36 chr1 193064088 193064253 -49600100 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 225 179 113 0 chr1 193064279 193064385 -49599968 + (GAATG)n Simple_repeat Simple_repeat 1 118 0 415 210 111 25 chr1 193064395 193064598 -49599755 + (GAGTG)n Simple_repeat Simple_repeat 1 220 0 312 241 120 0 chr1 193064819 193064977 -49599376 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 315 221 63 51 chr1 193065740 193065924 -49598429 - L1ME2 LINE L1 0 6164 5973 304 224 164 45 chr1 193066307 193066441 -49597912 + MIR3 SINE MIR 20 169 -39 420 255 149 31 chr1 193066742 193066903 -49597450 - MIR SINE MIR -17 245 66 244 221 168 35 chr1 193067436 193067549 -49596804 + L2 LINE L2 3181 3308 -5 215 100 0 25 chr1 193067641 193067681 -49596672 + (TTCCC)n Simple_repeat Simple_repeat 3 41 0 755 161 156 0 chr1 193067931 193068117 -49596236 + Charlie5 DNA MER1_type 2363 2577 -35 659 291 46 5 chr1 193068485 193068681 -49595672 - MIR SINE MIR -47 215 12 292 263 70 18 chr1 193069672 193069786 -49594567 + MIR SINE MIR 100 219 -43 2146 250 127 45 chr1 193070005 193070210 -49594143 - HAL1b LINE L1 0 1348 1161 1820 180 0 10 chr1 193070210 193070516 -49593837 - AluJo SINE Alu -9 303 1 2146 250 127 45 chr1 193070516 193071442 -49592911 - HAL1b LINE L1 -187 1161 112 797 109 0 8 chr1 193071442 193071570 -49592783 + (TTCC)n Simple_repeat Simple_repeat 3 129 0 2146 250 127 45 chr1 193071570 193071622 -49592731 - HAL1b LINE L1 -1236 112 66 240 283 50 10 chr1 193072264 193072363 -49591990 + L3b LINE CR1 1262 1364 -219 503 316 103 13 chr1 193072562 193072796 -49591557 - MIR SINE MIR 0 262 8 2828 172 67 0 chr1 193072948 193073459 -49590894 + L1MB3 LINE L1 5637 6181 -2 297 276 157 22 chr1 193073472 193073606 -49590747 + MER5A DNA MER1_type 38 189 0 218 255 0 0 chr1 193074291 193074342 -49590011 + CT-rich Low_complexity Low_complexity 2 52 0 271 207 52 0 chr1 193076795 193076853 -49587500 - MIR SINE MIR -71 191 131 186 259 12 71 chr1 193076964 193077049 -49587304 - MIR SINE MIR -50 212 133 595 244 160 0 chr1 193077080 193077236 -49587117 + MER5A DNA MER1_type 9 189 0 314 244 0 79 chr1 193077246 193077373 -49586980 - MIR3 SINE MIR -54 154 38 1037 230 22 78 chr1 193078295 193078695 -49585658 - MLT1B LTR MaLR -2 388 11 414 291 46 46 chr1 193078767 193078963 -49585390 + MIR SINE MIR 1 196 -66 272 220 46 73 chr1 193080946 193081055 -49583298 + MIR3 SINE MIR 88 193 -15 546 335 47 5 chr1 193081345 193081560 -49582793 - MIR SINE MIR -14 248 25 2079 119 0 19 chr1 193081560 193081872 -49582481 - AluSc SINE Alu -3 306 1 191 275 132 22 chr1 193083103 193083194 -49581159 - L2 LINE L2 -5 3308 3208 2365 46 0 0 chr1 193083429 193083741 -49580612 + AluY SINE Alu 1 312 0 469 288 38 12 chr1 193083797 193083957 -49580396 + Charlie5 DNA MER1_type 1 164 -2448 470 276 193 43 chr1 193083998 193084371 -49579982 + L2 LINE L2 2883 3311 -2 182 222 16 32 chr1 193084372 193084435 -49579918 - L2 LINE L2 -345 2969 2908 1764 121 4 0 chr1 193084928 193085176 -49579177 + AluSx SINE Alu 1 249 -63 535 261 35 0 chr1 193085191 193085306 -49579047 + L2 LINE L2 3153 3271 -1 406 323 67 6 chr1 193085929 193086093 -49578260 - MIR3 SINE MIR -1 207 34 467 262 48 8 chr1 193086244 193086370 -49577983 + MIR SINE MIR 108 238 -24 315 344 110 6 chr1 193086791 193086954 -49577399 + MIR3 SINE MIR 17 196 -12 211 174 29 116 chr1 193087862 193087931 -49576422 - L2 LINE L2 0 3313 3251 351 0 0 0 chr1 193090328 193090367 -49573986 + (CA)n Simple_repeat Simple_repeat 1 39 0 212 229 25 24 chr1 193093030 193093158 -49571195 + (CA)n Simple_repeat Simple_repeat 1 128 0 351 275 92 49 chr1 193093210 193093352 -49571001 + MIR3 SINE MIR 61 208 0 863 183 24 6 chr1 193093484 193093653 -49570700 - MER5B DNA MER1_type -6 172 1 270 0 0 0 chr1 193094790 193094820 -49569533 + (CA)n Simple_repeat Simple_repeat 1 30 0 349 313 106 17 chr1 193097344 193097523 -49566830 - MIR3 SINE MIR -2 206 12 506 247 65 29 chr1 193099622 193099792 -49564561 + MIR SINE MIR 49 224 -38 330 257 0 0 chr1 193099892 193099966 -49564387 - L2 LINE L2 0 3313 3240 220 325 0 26 chr1 193099984 193100061 -49564292 + MIR3 SINE MIR 123 197 -11 485 229 26 78 chr1 193100742 193100895 -49563458 + MIR SINE MIR 46 190 -72 232 336 67 13 chr1 193101643 193101792 -49562561 - L2 LINE L2 0 3272 3116 794 280 68 29 chr1 193101825 193102132 -49562221 + MARNA DNA Mariner 128 446 -140 459 277 15 24 chr1 193102546 193102711 -49561642 - MIR3 SINE MIR -52 156 31 433 238 0 0 chr1 193103038 193103143 -49561210 - MER53 DNA DNA -84 105 1 382 254 58 9 chr1 193104316 193104446 -49559907 + MIR SINE MIR 50 186 -65 363 357 40 0 chr1 193104460 193104586 -49559767 + MIR3 SINE MIR 29 159 -49 203 321 182 6 chr1 193105627 193105786 -49558567 + MIR3 SINE MIR 18 204 -4 314 163 10 10 chr1 193106971 193107039 -49557314 + MIR3 SINE MIR 102 170 -38 289 318 26 66 chr1 193107262 193107413 -49556940 - MIR SINE MIR -70 192 48 343 266 70 8 chr1 193107993 193108121 -49556232 - MIR3 SINE MIR -65 143 8 283 139 139 0 chr1 193108157 193108236 -49556117 + MER113 DNA MER1_type? 4 93 -428 236 121 0 0 chr1 193108265 193108324 -49556029 - FLAM_C SINE Alu 0 144 86 1002 168 128 5 chr1 193108324 193108520 -49555833 - AluJo SINE Alu -92 220 1 807 255 118 36 chr1 193108525 193108690 -49555663 + MER113 DNA MER1_type? 121 271 -250 189 74 0 0 chr1 193108690 193108717 -49555636 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 807 255 118 36 chr1 193108717 193108916 -49555437 + MER113 DNA MER1_type? 271 515 -6 283 309 56 16 chr1 193109855 193109981 -49554372 + MIR3 SINE MIR 2 132 -76 1615 193 24 0 chr1 193110327 193110623 -49553730 + AluJo SINE Alu 1 303 -9 2041 78 41 27 chr1 193111766 193112060 -49552293 - AluY SINE Alu -11 300 3 421 308 111 17 chr1 193114828 193115000 -49549353 + MER20 DNA MER1_type 32 219 0 698 246 96 0 chr1 193115328 193115515 -49548838 - MIR SINE MIR -42 220 16 189 344 32 21 chr1 193117479 193117572 -49546781 + MIR SINE MIR 43 136 -72 617 190 130 54 chr1 193117910 193118094 -49546259 + MER112 DNA MER1_type 51 248 -12 201 264 0 19 chr1 193118101 193118154 -49546199 + MIR3 SINE MIR 154 205 -3 1060 173 16 0 chr1 193118924 193119109 -49545244 + MER5A DNA MER1_type 2 189 0 1936 123 0 30 chr1 193119266 193119592 -49544761 + AluJb SINE Alu 3 319 0 233 308 77 60 chr1 193119820 193119937 -49544416 - L2 LINE L2 0 3272 3154 393 200 148 0 chr1 193119963 193120078 -49544275 - MIR SINE MIR -54 208 77 323 228 13 0 chr1 193120758 193120837 -49543516 - MER116 DNA Mariner 0 80 1 1071 139 0 0 chr1 193121145 193121325 -49543028 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 239 324 44 74 chr1 193122359 193122560 -49541793 - MIR3 SINE MIR -26 236 29 184 143 0 41 chr1 193125211 193125260 -49539093 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 334 308 0 35 chr1 193125275 193125418 -49538935 + C-rich Low_complexity Low_complexity 3 140 0 462 312 48 22 chr1 193125674 193125905 -49538448 + MIR SINE MIR 12 248 -14 407 311 144 0 chr1 193126791 193126958 -49537395 - MIR SINE MIR -25 237 47 191 325 58 33 chr1 193131327 193131447 -49532906 - L2 LINE L2 -477 2837 2715 307 206 16 0 chr1 193134261 193134324 -49530029 - MER91 DNA MER1_type 0 140 77 482 337 11 11 chr1 193134516 193134694 -49529659 - MER5A DNA MER1_type -4 185 8 195 204 0 0 chr1 193135509 193135553 -49528800 + (TG)n Simple_repeat Simple_repeat 2 45 0 400 302 23 0 chr1 193137114 193137243 -49527110 - L2 LINE L2 0 3313 3182 286 304 67 37 chr1 193138314 193138449 -49525904 - MIR SINE MIR -80 182 44 690 216 14 7 chr1 193138498 193138646 -49525707 - AluJ SINE Alu -2 310 162 * 784 146 0 0 chr1 193138640 193138750 -49525603 - AluJ SINE Alu -202 110 1 189 358 98 6 chr1 193138757 193138930 -49525423 - L2 LINE L2 -17 3296 3108 1309 205 77 17 chr1 193139275 193139635 -49524718 - L1ME3A LINE L1 -3 6159 5775 537 293 17 19 chr1 193140304 193140487 -49523866 - MIR3 SINE MIR -64 144 12 463 332 53 5 chr1 193141326 193141516 -49522837 - MIR SINE MIR -59 203 5 366 265 20 10 chr1 193142352 193142450 -49521903 - MIR3 SINE MIR -49 159 61 232 308 0 0 chr1 193142572 193142624 -49521729 + L2 LINE L2 3128 3179 -93 543 252 13 0 chr1 193142746 193142897 -49521456 - L2 LINE L2 -1223 2091 1939 387 0 0 0 chr1 193142928 193142971 -49521382 + (CA)n Simple_repeat Simple_repeat 1 43 0 2116 104 10 3 chr1 193143237 193143535 -49520818 + AluSp SINE Alu 1 300 -13 766 143 27 0 chr1 193143563 193143675 -49520678 + FLAM_C SINE Alu 2 116 -27 200 35 35 0 chr1 193143676 193143705 -49520648 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 678 250 180 0 chr1 193143705 193143949 -49520404 - L2 LINE L2 -1111 2203 1916 1003 191 9 35 chr1 193143985 193144215 -49520138 - L1ME2 LINE L1 -10 6154 5931 1847 103 4 4 chr1 193144225 193144486 -49519867 + AluSc SINE Alu 38 298 -11 2165 97 0 28 chr1 193144496 193144815 -49519538 + AluSq SINE Alu 1 310 -3 2741 279 50 38 chr1 193144816 193147858 -49516495 - L1ME LINE L1 -2815 3265 45 3860 257 105 10 chr1 193147880 193149153 -49515200 - L2 LINE L2 -1384 1930 537 401 303 147 38 chr1 193149891 193150467 -49513886 + L2 LINE L2 2407 3046 -226 1086 312 99 10 chr1 193150633 193151130 -49513223 - L3 LINE CR1 -1 1576 1036 215 244 205 63 chr1 193151497 193151624 -49512729 + MIR3 SINE MIR 60 204 -4 744 50 0 0 chr1 193152428 193152529 -49511824 + (TG)n Simple_repeat Simple_repeat 2 102 0 261 238 36 0 chr1 193152601 193152685 -49511668 + MER103 DNA DNA 16 102 -64 238 288 30 0 chr1 193153159 193153225 -49511128 - MER5A DNA MER1_type 0 189 122 398 271 153 46 chr1 193153516 193153797 -49510556 + L2 LINE L2 3002 3312 -1 914 217 56 56 chr1 193154198 193154376 -49509977 + MIR SINE MIR 13 193 -69 2200 107 0 0 chr1 193154376 193154676 -49509677 + AluSq SINE Alu 1 300 -13 914 217 56 56 chr1 193154676 193154746 -49509607 + MIR SINE MIR 192 261 -1 331 194 15 0 chr1 193155446 193155513 -49508840 + MER5A DNA MER1_type 4 71 -118 756 66 52 0 chr1 193155734 193155870 -49508483 + (TCTA)n Simple_repeat Simple_repeat 3 145 0 250 320 86 16 chr1 193155881 193156009 -49508344 + L2 LINE L2 3169 3305 -8 503 264 68 25 chr1 193156782 193156945 -49507408 + MIR SINE MIR 81 250 -12 633 259 78 10 chr1 193158502 193158695 -49505658 + MIR SINE MIR 20 225 -37 502 301 153 0 chr1 193159389 193159572 -49504781 - MIR SINE MIR -19 243 33 1055 91 30 156 chr1 193160616 193160847 -49503506 - AluSc SINE Alu -107 202 1 2058 124 8 102 chr1 193160886 193161258 -49503095 + MER1B DNA MER1_type 1 337 0 631 297 58 64 chr1 193161644 193162021 -49502332 + L2 LINE L2 2898 3272 0 267 316 0 13 chr1 193164203 193164279 -49500074 - MIR SINE MIR 0 262 188 * 291 292 31 0 chr1 193164274 193164370 -49499983 + MIR SINE MIR 163 261 -1 * 574 282 83 0 chr1 193164363 193164544 -49499809 - MIR SINE MIR -63 199 4 187 219 24 122 chr1 193165631 193165713 -49498640 - MIR3 SINE MIR -42 166 93 391 273 176 0 chr1 193166833 193166998 -49497355 - MIR SINE MIR -49 213 20 248 326 22 0 chr1 193167773 193167862 -49496491 + L2 LINE L2 3192 3282 -31 2222 97 13 0 chr1 193167877 193168185 -49496168 - AluSp SINE Alu -1 312 1 435 298 55 14 chr1 193169960 193170161 -49494192 - MIR SINE MIR -25 237 30 533 260 20 34 chr1 193170704 193170850 -49493503 - MER91A DNA MER1_type -52 144 1 680 155 10 0 chr1 193172094 193172197 -49492156 + AluSg/x SINE Alu 177 280 -32 345 311 22 15 chr1 193172197 193172332 -49492021 - MIR SINE MIR -120 142 7 580 323 66 13 chr1 193176007 193176233 -49488120 + MIR SINE MIR 8 245 -17 512 226 43 106 chr1 193177534 193177835 -49486518 + L1MC5 LINE L1 7643 7924 -37 228 245 0 0 chr1 193178261 193178310 -49486043 + (CA)n Simple_repeat Simple_repeat 1 49 0 1470 156 5 0 chr1 193179719 193179943 -49484410 - AluJb SINE Alu -83 229 5 266 344 98 8 chr1 193181565 193181687 -49482666 + MIR SINE MIR 17 149 -59 470 238 67 78 chr1 193182568 193182761 -49481592 - MIR3 SINE MIR -3 205 15 243 296 176 25 chr1 193184436 193184595 -49479758 + MIR SINE MIR 22 204 -4 196 292 0 0 chr1 193185057 193185105 -49479248 - L2 LINE L2 -17 3255 3208 790 277 92 34 chr1 193185110 193185492 -49478861 - MLT1C LTR MaLR 0 467 24 314 384 32 0 chr1 193185717 193185902 -49478451 - L2 LINE L2 -213 3059 2869 1969 130 0 36 chr1 193185986 193186293 -49478060 + AluSx SINE Alu 1 296 -16 290 302 92 48 chr1 193186329 193186624 -49477729 - L2 LINE L2 -638 2676 2369 519 173 45 0 chr1 193186642 193186752 -49477601 - MER20 DNA MER1_type -1 218 104 206 352 11 11 chr1 193186753 193186841 -49477512 - L2 LINE L2 -978 2336 2249 278 373 78 7 chr1 193186916 193187058 -49477295 + L2 LINE L2 3113 3264 -8 448 301 199 3 chr1 193187207 193187533 -49476820 + L1ME3A LINE L1 5505 5894 -276 355 348 49 37 chr1 193187637 193187801 -49476552 + L1ME3A LINE L1 5963 6128 -42 311 235 148 0 chr1 193188927 193189008 -49475345 + MIR SINE MIR 29 121 -87 296 330 0 11 chr1 193189927 193190018 -49474335 + MIR SINE MIR 38 127 -81 870 256 76 0 chr1 193190111 193190349 -49474004 + MIR SINE MIR 7 262 0 2387 91 0 0 chr1 193191521 193191828 -49472525 + AluSg SINE Alu 1 307 -3 292 219 90 112 chr1 193193627 193193679 -49470674 - MIR3 SINE MIR -4 204 152 826 155 213 0 chr1 193193679 193193834 -49470519 - MER5A DNA MER1_type -1 188 1 292 219 90 112 chr1 193193834 193193959 -49470394 - MIR3 SINE MIR -56 152 31 2408 109 9 15 chr1 193195424 193195763 -49468590 - MER1B DNA MER1_type 0 337 1 383 260 84 17 chr1 193196299 193196487 -49467866 + MIR SINE MIR 15 212 -50 710 71 0 0 chr1 193197099 193197216 -49467137 + AluSc SINE Alu 194 310 0 2108 130 3 0 chr1 193197230 193197523 -49466830 + AluSx SINE Alu 1 294 -18 329 148 0 0 chr1 193197533 193197587 -49466766 - AluJo SINE Alu -66 236 183 829 164 0 15 chr1 193197589 193197723 -49466630 - AluJo SINE Alu -179 133 2 253 253 0 0 chr1 193198768 193198843 -49465510 + (TG)n Simple_repeat Simple_repeat 2 76 0 369 0 0 0 chr1 193200074 193200115 -49464238 + (CA)n Simple_repeat Simple_repeat 1 41 0 213 389 71 0 chr1 193203186 193203299 -49461054 - MIR3 SINE MIR -85 123 3 1898 70 51 33 chr1 193206281 193206554 -49457799 - AluY SINE Alu -31 280 3 198 0 0 0 chr1 193207101 193207123 -49457230 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1782 139 7 56 chr1 193207127 193207429 -49456924 - AluSx SINE Alu -25 287 1 2487 174 51 18 chr1 193208262 193208751 -49455602 + MLT1D LTR MaLR 1 505 0 193 244 397 8 chr1 193208948 193209079 -49455274 - MIR3 SINE MIR -7 201 20 257 284 29 10 chr1 193209105 193209152 -49455201 + (CCCTAA)n Simple_repeat Simple_repeat 1 46 -58 2478 69 0 0 chr1 193209152 193209455 -49454898 - AluY SINE Alu -8 303 1 257 284 29 10 chr1 193209455 193209509 -49454844 + (CCCTAA)n Simple_repeat Simple_repeat 46 104 0 190 243 0 0 chr1 193209769 193209806 -49454547 + MIR SINE MIR 108 144 -118 846 169 0 0 chr1 193209903 193210039 -49454314 - AluJo SINE Alu -176 136 1 721 264 83 29 chr1 193210802 193211044 -49453309 + MIR SINE MIR 6 260 -2 565 296 23 0 chr1 193211044 193211220 -49453133 - MIR SINE MIR -63 199 20 1787 149 13 17 chr1 193211376 193211677 -49452676 + AluJb SINE Alu 1 300 -12 293 247 52 13 chr1 193211993 193212070 -49452283 - MIR3 SINE MIR -118 90 11 294 287 238 7 chr1 193212311 193212454 -49451899 + MIR SINE MIR 73 248 -14 2041 104 21 0 chr1 193212539 193212827 -49451526 + AluSx SINE Alu 1 294 -18 2294 102 0 0 chr1 193212830 193213134 -49451219 + AluSc SINE Alu 1 304 -5 537 357 46 4 chr1 193213166 193213404 -49450949 + MIR SINE MIR 15 262 0 647 211 113 92 chr1 193213836 193213958 -49450395 + MER33 DNA MER1_type 23 141 -2444 1862 146 7 36 chr1 193213958 193214267 -49450086 + AluSx SINE Alu 1 300 -12 647 211 113 92 chr1 193214267 193214344 -49450009 + MER33 DNA MER1_type 141 215 -2370 1996 162 3 0 chr1 193214344 193214646 -49449707 - AluJb SINE Alu -9 303 1 647 211 113 92 chr1 193214646 193214691 -49449662 + MER33 DNA MER1_type 215 258 -2327 1717 108 82 43 chr1 193214691 193214970 -49449383 + AluSx SINE Alu 1 290 -22 647 211 113 92 chr1 193214970 193215007 -49449346 + MER33 DNA MER1_type 258 312 -12 1036 190 58 0 chr1 193215046 193215251 -49449102 - MER20 DNA MER1_type -2 217 1 281 407 87 12 chr1 193215887 193216209 -49448144 - L2 LINE L2 -1 3271 2926 286 281 173 14 chr1 193216522 193216661 -49447692 + MIR3 SINE MIR 39 199 -9 1235 287 115 36 chr1 193216669 193217532 -49446821 - L2 LINE L2 -4 3309 2370 350 317 173 17 chr1 193217594 193217890 -49446463 - L2 LINE L2 -1212 2102 1743 2154 128 0 0 chr1 193217890 193218188 -49446165 + AluSx SINE Alu 1 298 -14 350 317 173 17 chr1 193218188 193218238 -49446115 - L2 LINE L2 -1571 1743 1702 857 106 8 8 chr1 193218355 193218478 -49445875 + FLAM_C SINE Alu 1 123 -20 246 235 20 0 chr1 193218536 193218587 -49445766 + L2 LINE L2 3204 3255 -17 203 245 31 92 chr1 193220242 193220340 -49444013 + MIR SINE MIR 125 216 -46 272 234 0 31 chr1 193222676 193222740 -49441613 + MER58 DNA MER1_type 1 55 -160 189 0 0 0 chr1 193222748 193222769 -49441584 + (T)n Simple_repeat Simple_repeat 1 21 0 284 206 178 0 chr1 193222769 193222842 -49441511 + MER58 DNA MER1_type 128 2418 -2 2193 107 3 0 chr1 193222892 193223191 -49441162 + AluSg SINE Alu 1 300 -10 193 293 61 0 chr1 193223208 193223290 -49441063 - L2 LINE L2 -502 2812 2726 186 255 59 0 chr1 193223468 193223519 -49440834 + MIR3 SINE MIR 105 158 -50 42 20 0 0 chr1 193223536 193223585 -49440768 + AT_rich Low_complexity Low_complexity 1 49 0 1254 93 22 6 chr1 193223661 193223843 -49440510 + L1PA12 LINE L1 5984 6168 0 1063 268 33 86 chr1 193424593 193424706 -49239647 - L2 LINE L2 -2 3311 3194 1993 150 0 7 chr1 193424706 193425000 -49239353 - AluJb SINE Alu -13 299 8 1063 268 33 86 chr1 193425000 193425012 -49239341 - L2 LINE L2 -119 3194 3183 1995 154 6 3 chr1 193425012 193425323 -49239030 - AluJo SINE Alu 0 312 1 1063 268 33 86 chr1 193425323 193425537 -49238816 - L2 LINE L2 -130 3183 2959 2187 118 0 10 chr1 193425537 193425834 -49238519 - AluSx SINE Alu -18 294 1 1063 268 33 86 chr1 193425834 193426280 -49238073 - L2 LINE L2 -354 2959 2586 1137 80 126 0 chr1 193426369 193426520 -49237833 - AluSq SINE Alu -6 307 138 1415 88 0 0 chr1 193426620 193426791 -49237562 + AluSg/x SINE Alu 122 292 -20 229 172 35 0 chr1 193426866 193426924 -49237429 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 3448 175 34 0 chr1 193426939 193427596 -49236757 - L1MB7 LINE L1 -79 6105 5427 2587 73 0 0 chr1 193427642 193427945 -49236408 - AluY SINE Alu -8 303 1 471 346 115 29 chr1 193427981 193428111 -49236242 + L2 LINE L2 2148 2265 -1049 2394 105 0 0 chr1 193428111 193428416 -49235937 - AluSg SINE Alu -5 305 1 471 346 115 29 chr1 193428416 193428704 -49235649 + L2 LINE L2 2265 2602 -712 911 111 0 15 chr1 193428717 193428877 -49235476 - FLAM_C SINE Alu 0 133 1 2104 98 0 11 chr1 193429303 193429578 -49234775 + AluSq SINE Alu 40 311 -2 517 317 221 16 chr1 193429653 193429965 -49234388 + L3 LINE CR1 431 806 -771 2147 94 35 11 chr1 193430120 193430407 -49233946 + AluSx SINE Alu 1 294 -18 1974 145 14 0 chr1 193430435 193430724 -49233629 + AluJo SINE Alu 1 293 -19 702 229 22 45 chr1 193430724 193430947 -49233406 + L1MC5 LINE L1 7714 7931 -30 818 182 73 0 chr1 193431531 193431696 -49232657 - MER45A DNA AcHobo -1 177 1 1715 152 4 4 chr1 193433078 193433364 -49230989 - AluJb SINE Alu 0 313 28 744 164 0 0 chr1 193433661 193433783 -49230570 + FLAM_A SINE Alu 6 127 -15 1754 191 0 13 chr1 193433797 193434101 -49230252 + AluJb SINE Alu 1 300 -12 201 74 0 0 chr1 193434101 193434128 -49230225 + (GA)n Simple_repeat Simple_repeat 1 27 0 317 246 61 9 chr1 193434128 193434242 -49230111 + L1M4 LINE L1 3081 3200 -2946 2429 65 0 26 chr1 193434251 193434559 -49229794 + AluY SINE Alu 1 300 -11 202 245 0 20 chr1 193434559 193434598 -49229755 + GA-rich Low_complexity Low_complexity 10 49 0 1152 111 0 0 chr1 193434598 193434648 -49229705 + (GGAA)n Simple_repeat Simple_repeat 1 230 0 1152 111 0 0 chr1 193434648 193434828 -49229525 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 909 198 32 16 chr1 193434946 193435133 -49229220 + AluJo SINE Alu 122 311 -1 2129 126 13 3 chr1 193435149 193435451 -49228902 + AluSq SINE Alu 1 305 -8 275 246 25 85 chr1 193435474 193435592 -49228761 + MIR SINE MIR 105 215 -47 1954 142 3 43 chr1 193435905 193436230 -49228123 - AluJo SINE Alu 0 312 1 416 204 106 21 chr1 193436696 193436838 -49227515 + L1ME4a LINE L1 5729 5882 -239 465 150 0 11 chr1 193436951 193437194 -49227159 + AluJo SINE Alu 1 303 -9 2427 84 0 0 chr1 193437514 193437811 -49226542 + AluSc SINE Alu 13 309 0 639 227 54 54 chr1 193437963 193438085 -49226268 + MER105 DNA DNA 1 125 -79 1863 165 72 21 chr1 193438085 193438461 -49225892 + MSTD LTR MaLR 1 395 -1 639 227 54 54 chr1 193438461 193438541 -49225812 + MER105 DNA DNA 124 203 -1 2179 114 0 7 chr1 193438945 193439234 -49225119 - AluSx SINE Alu -25 287 1 1914 108 81 0 chr1 193439297 193439597 -49224756 - AluSx SINE Alu 0 322 2 682 351 144 38 chr1 193439934 193441469 -49222884 - L2 LINE L2 -1 3271 1899 2263 106 7 10 chr1 193441469 193441771 -49222582 + AluSx SINE Alu 1 301 -11 682 351 144 38 chr1 193441771 193441972 -49222381 - L2 LINE L2 -1373 1899 1721 898 184 6 0 chr1 193441972 193442130 -49222223 + FRAM SINE Alu 1 159 -7 682 351 144 38 chr1 193442130 193442289 -49222064 - L2 LINE L2 -1551 1721 1155 1883 153 48 0 chr1 193442686 193442980 -49221373 + AluJb SINE Alu 1 308 -4 205 315 79 8 chr1 193442986 193443113 -49221240 - MIR SINE MIR -2 260 125 1794 220 113 24 chr1 193443113 193443353 -49221000 + L1ME3A LINE L1 5592 5809 -361 2328 100 0 0 chr1 193443353 193443644 -49220709 + AluSq SINE Alu 6 296 -17 1794 220 113 24 chr1 193443644 193443748 -49220605 + L1ME3A LINE L1 5809 5902 -268 530 75 43 0 chr1 193443748 193443841 -49220512 + (TA)n Simple_repeat Simple_repeat 2 98 0 1794 220 113 24 chr1 193443841 193444027 -49220326 + L1ME3A LINE L1 5902 6170 0 281 338 21 56 chr1 193444074 193444216 -49220137 - MIR SINE MIR -125 137 1 1534 279 166 11 chr1 193444551 193445293 -49219060 + L2 LINE L2 1423 2279 -1035 600 383 114 42 chr1 193445289 193446611 -49217742 - L2 LINE L2 -573 2741 1325 * 227 302 213 20 chr1 193446656 193446858 -49217495 - MIR SINE MIR 0 262 22 685 143 137 37 chr1 193447137 193447315 -49217038 + L1M3 LINE L1 5623 5817 -357 406 66 0 8 chr1 193447320 193447384 -49216969 + L1MB4 LINE L1 5770 5832 -343 2170 126 0 3 chr1 193447548 193447850 -49216503 - AluSx SINE Alu -11 301 1 2358 78 0 47 chr1 193448276 193448597 -49215756 - AluSx SINE Alu -6 306 1 255 235 61 41 chr1 193448611 193448709 -49215644 - L2 LINE L2 0 3313 3214 256 298 0 21 chr1 193448992 193449086 -49215267 + L2 LINE L2 2971 3062 -210 2161 123 0 10 chr1 193449490 193449791 -49214562 - AluSx SINE Alu -14 298 1 188 305 51 0 chr1 193449966 193450025 -49214328 + L2 LINE L2 3172 3233 -39 243 320 13 26 chr1 193450152 193450230 -49214123 + MIR SINE MIR 3 79 -183 1085 148 6 11 chr1 193450254 193450430 -49213923 + AluSg/x SINE Alu 136 310 -2 1989 139 3 36 chr1 193450591 193450900 -49213453 + AluJb SINE Alu 1 299 -13 214 264 38 66 chr1 193451040 193451146 -49213207 + MIR SINE MIR 156 258 -4 380 309 217 18 chr1 193451262 193451479 -49212874 + MIR SINE MIR 3 262 0 686 127 45 52 chr1 193451631 193451765 -49212588 + FLAM_C SINE Alu 1 133 0 467 254 14 21 chr1 193453891 193454033 -49210320 - MIR SINE MIR -112 150 10 800 174 0 29 chr1 193454291 193454429 -49209924 - AluJo SINE Alu -178 134 1 251 236 0 0 chr1 193456090 193456145 -49208208 - L3b LINE CR1 -188 1395 1341 2429 103 3 0 chr1 193456668 193456979 -49207374 + AluSp SINE Alu 1 312 -1 203 286 33 44 chr1 193457200 193457291 -49207062 + MIR SINE MIR 39 128 -80 2266 103 0 7 chr1 193458433 193458742 -49205611 + AluSg SINE Alu 1 310 0 736 169 0 8 chr1 193459085 193459242 -49205111 + FLAM_C SINE Alu 5 160 0 903 141 35 114 chr1 193459373 193459490 -49204863 + MER96B DNA MER1_type? 3 128 -289 1227 97 0 0 chr1 193459490 193459666 -49204687 + (TA)n Simple_repeat Simple_repeat 2 177 0 2257 94 11 0 chr1 193459666 193459953 -49204400 - AluSp SINE Alu -21 292 3 903 141 35 114 chr1 193459953 193460089 -49204264 + MER96B DNA MER1_type? 126 237 -180 258 382 94 5 chr1 193460090 193460281 -49204072 - L3b LINE CR1 -73 1510 1303 277 387 0 6 chr1 193460670 193460843 -49203510 + GA-rich Low_complexity Low_complexity 5 176 0 456 275 114 0 chr1 193464570 193464719 -49199634 - MIR SINE MIR -33 229 64 243 268 16 41 chr1 193466102 193466225 -49198128 + CT-rich Low_complexity Low_complexity 4 123 0 304 309 89 30 chr1 193468060 193468133 -49196220 - MIR SINE MIR -38 224 157 1942 130 3 14 chr1 193468133 193468453 -49195900 - AluSx SINE Alu 0 317 1 304 309 89 30 chr1 193468453 193468546 -49195807 - MIR SINE MIR -105 157 47 21 36 0 0 chr1 193471078 193471106 -49193247 + AT_rich Low_complexity Low_complexity 1 28 0 384 322 0 0 chr1 193471135 193471253 -49193100 - MIR3 SINE MIR -88 120 3 418 279 0 62 chr1 193473193 193473355 -49190998 - MIR SINE MIR -65 143 45 225 83 0 0 chr1 193473977 193474013 -49190340 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 215 250 62 0 chr1 193474721 193474785 -49189568 - MIR SINE MIR -118 144 77 2101 94 38 0 chr1 193474865 193475152 -49189201 + AluSp SINE Alu 1 298 -15 940 244 50 12 chr1 193476784 193477026 -49187327 - MIR SINE MIR 0 262 12 263 315 63 0 chr1 193477004 193477115 -49187238 + MIR SINE MIR 22 139 -123 * 383 218 100 18 chr1 193478261 193478371 -49185982 - MIR SINE MIR -50 212 94 2271 101 0 7 chr1 193478665 193478961 -49185392 - AluSg SINE Alu -16 294 1 248 274 78 59 chr1 193479090 193479192 -49185161 - L3 LINE CR1 -106 1471 1368 265 302 16 16 chr1 193479732 193479858 -49184495 + MIR SINE MIR 71 196 -66 1822 133 139 6 chr1 193480062 193480385 -49183968 - MER47A DNA MER2_type 0 366 1 267 325 126 10 chr1 193480514 193480720 -49183633 - L3 LINE CR1 -218 1359 1130 723 191 0 22 chr1 193480911 193481047 -49183306 - FLAM_C SINE Alu 0 133 1 2261 116 0 0 chr1 193481064 193481356 -49182997 - AluSx SINE Alu -20 292 1 186 296 93 93 chr1 193482351 193482459 -49181894 + MIR SINE MIR 124 231 -31 2277 104 0 10 chr1 193483164 193483471 -49180882 - AluSq SINE Alu -9 304 1 234 0 0 0 chr1 193483599 193483625 -49180728 + (TG)n Simple_repeat Simple_repeat 1 26 0 1740 142 8 8 chr1 193483639 193483892 -49180461 - AluSx SINE Alu -59 253 1 2021 148 0 3 chr1 193485505 193485803 -49178550 - AluJo SINE Alu -15 297 1 237 83 0 0 chr1 193486224 193486260 -49178093 + (TCC)n Simple_repeat Simple_repeat 1 36 0 207 288 0 27 chr1 193486581 193486654 -49177699 + L2 LINE L2 3200 3270 -2 2421 83 3 0 chr1 193487342 193487642 -49176711 - AluSp SINE Alu -9 304 4 2401 95 3 7 chr1 193487644 193487950 -49176403 - AluSq SINE Alu -8 305 1 1529 146 63 12 chr1 193488474 193488757 -49175596 - AluJb SINE Alu 0 312 20 1891 117 78 0 chr1 193488877 193489158 -49175195 - AluSq SINE Alu -10 303 1 2051 111 29 41 chr1 193489419 193489734 -49174619 + AluSx SINE Alu 2 312 0 2210 117 7 0 chr1 193491839 193492139 -49172214 - AluSg SINE Alu -8 302 1 207 0 0 0 chr1 193492280 193492303 -49172050 + (CA)n Simple_repeat Simple_repeat 1 23 0 600 241 77 24 chr1 193493028 193493282 -49171071 + L1MC4a LINE L1 5645 5912 -209 479 217 136 66 chr1 193493414 193493686 -49170667 - L1ME4a LINE L1 -49 6072 5782 550 139 0 0 chr1 193495255 193495334 -49169019 - AluS SINE Alu -232 81 3 2203 128 3 6 chr1 193495638 193495951 -49168402 + AluSx SINE Alu 1 312 0 313 392 8 0 chr1 193497186 193497306 -49167047 + MIR3 SINE MIR 46 166 -42 2147 109 7 3 chr1 193497781 193498074 -49166279 - AluSx SINE Alu -18 294 1 2310 104 3 0 chr1 193498319 193498618 -49165735 - AluSp SINE Alu -13 300 1 2265 110 0 0 chr1 193498676 193498967 -49165386 - AluSx SINE Alu -21 291 1 2295 135 17 0 chr1 193499508 193499864 -49164489 - MER47A DNA MER2_type 0 366 5 630 234 95 0 chr1 193499905 193499948 -49164405 + Charlie1 DNA MER1_type 61 99 -2662 2324 116 0 0 chr1 193499948 193500258 -49164095 - AluSg SINE Alu 0 310 1 630 234 95 0 chr1 193500258 193500372 -49163981 + Charlie1 DNA MER1_type 99 233 -2528 227 260 31 0 chr1 193500362 193500458 -49163895 + Charlie1 DNA MER1_type 2620 2718 -43 * 2064 139 3 0 chr1 193501172 193501466 -49162887 - AluSx SINE Alu -17 295 1 243 0 0 0 chr1 193501936 193501963 -49162390 + (TA)n Simple_repeat Simple_repeat 2 28 0 1090 48 76 7 chr1 193501963 193502108 -49162245 - L1PA5 LINE L1 -15 6139 5985 2366 91 3 0 chr1 193503332 193503630 -49160723 - AluSp SINE Alu -14 299 1 1907 173 0 0 chr1 193504158 193504459 -49159894 + AluJo SINE Alu 2 302 -10 732 153 7 36 chr1 193504873 193505010 -49159343 + FLAM_C SINE Alu 1 133 0 221 271 0 34 chr1 193505699 193505758 -49158595 + L3 LINE CR1 1520 1576 -1 1861 146 9 41 chr1 193506971 193507108 -49157245 + AluJb SINE Alu 1 141 -171 2288 97 3 0 chr1 193507108 193507398 -49156955 + AluSc SINE Alu 1 291 -18 201 74 0 0 chr1 193507401 193507428 -49156925 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1861 146 9 41 chr1 193507428 193507602 -49156751 + AluJb SINE Alu 143 306 -6 1554 167 38 35 chr1 193507611 193507898 -49156455 + AluJo SINE Alu 1 288 -24 1490 191 14 18 chr1 193509827 193510133 -49154220 + AluJo SINE Alu 1 305 0 261 283 0 38 chr1 193512154 193512260 -49152093 - MIR SINE MIR -61 201 100 950 209 84 0 chr1 193512928 193513119 -49151234 - MER3 DNA MER1_type -1 208 2 426 284 85 20 chr1 193513137 193513338 -49151015 - MIR SINE MIR -9 253 40 2172 116 3 0 chr1 193514175 193514469 -49149884 + AluSq SINE Alu 1 295 -18 2277 112 0 10 chr1 193514471 193514783 -49149570 + AluSg1 SINE Alu 1 309 0 990 176 0 6 chr1 193515026 193515185 -49149168 - FRAM SINE Alu -19 157 1 1244 185 91 3 chr1 193515312 193515609 -49148744 + MER33 DNA MER1_type 1 323 -1 254 275 92 69 chr1 193515693 193515824 -49148529 + MIR SINE MIR 20 153 -55 2132 104 4 0 chr1 193515830 193516109 -49148244 + AluSp SINE Alu 1 280 -33 2750 210 100 18 chr1 193516459 193517198 -49147155 - L1MC4a LINE L1 -4 7804 7005 259 234 0 16 chr1 193517201 193517265 -49147088 + MER21B LTR ERV1 5 67 -796 2089 134 10 0 chr1 193517300 193517592 -49146761 - AluSx SINE Alu -12 300 6 4094 147 14 31 chr1 193517702 193518409 -49145944 + MER21B-int LTR ERV1 3442 4136 -55 1903 178 16 3 chr1 193518492 193518806 -49145547 + MER21B LTR ERV1 1 318 -545 2346 134 31 83 chr1 193518809 193519255 -49145098 + MER21A LTR ERV1 490 912 -19 5802 210 53 46 chr1 193519266 193520773 -49143580 - L1MC4a LINE L1 -816 6992 5471 1584 181 68 0 chr1 193520773 193521054 -49143299 + AluJb SINE Alu 1 300 -12 5802 210 53 46 chr1 193521054 193521164 -49143189 - L1MC4a LINE L1 -2337 5471 5363 291 277 20 50 chr1 193521419 193521621 -49142732 - L1MC4a LINE L1 -1002 5144 4949 1120 99 0 0 chr1 193521646 193521798 -49142555 - AluY SINE Alu -4 307 156 1313 137 5 10 chr1 193521799 193522004 -49142349 + AluJb SINE Alu 84 287 -25 2464 81 0 0 chr1 193522014 193522312 -49142041 + AluSx SINE Alu 1 298 -14 2299 93 3 0 chr1 193523144 193523445 -49140908 - AluSp SINE Alu -11 302 10 1104 150 0 0 chr1 193524677 193524844 -49139509 + FRAM SINE Alu 1 160 -16 2295 63 0 35 chr1 193525091 193525407 -49138946 - AluY SINE Alu -6 305 1 23 33 0 0 chr1 193527054 193527084 -49137269 + AT_rich Low_complexity Low_complexity 1 30 0 1465 177 51 17 chr1 193527161 193527455 -49136898 + AluJo SINE Alu 1 304 -8 2290 100 0 0 chr1 193527696 193528007 -49136346 + AluSx SINE Alu 1 311 -1 1937 123 0 24 chr1 193528684 193528976 -49135377 + AluSx SINE Alu 11 295 -17 2287 71 3 0 chr1 193529032 193529357 -49134996 + AluSx SINE Alu 1 312 0 837 195 13 13 chr1 193530066 193530225 -49134128 + FRAM SINE Alu 1 159 -7 291 377 0 9 chr1 193532228 193532342 -49132011 - MIR SINE MIR -76 132 20 1922 127 0 7 chr1 193532895 193533195 -49131158 + AluJo SINE Alu 1 298 -14 771 177 0 14 chr1 193533204 193533345 -49131008 + FAM SINE Alu 1 45 -4 460 161 183 0 chr1 193533647 193533740 -49130613 - FLAM_A SINE Alu -32 110 1 26 30 0 0 chr1 193534408 193534441 -49129912 + AT_rich Low_complexity Low_complexity 1 33 0 2098 119 0 0 chr1 193535267 193535579 -49128774 + AluSx SINE Alu 1 312 0 1001 192 12 0 chr1 193536291 193536463 -49127890 - MER5A DNA MER1_type -15 174 1 279 54 0 0 chr1 193537834 193537871 -49126482 + (CA)n Simple_repeat Simple_repeat 2 38 0 426 20 0 0 chr1 193539674 193539725 -49124628 + (TG)n Simple_repeat Simple_repeat 2 52 0 191 357 0 0 chr1 193539727 193539783 -49124570 + L2 LINE L2 3216 3271 -1 180 256 0 0 chr1 193540394 193540480 -49123873 + A-rich Low_complexity Low_complexity 1 86 0 1196 171 0 92 chr1 193541468 193541772 -49122581 + AluJo SINE Alu 27 302 -10 531 278 140 21 chr1 193542406 193542682 -49121671 - L1MC/D LINE L1 -728 5631 5389 2273 67 0 10 chr1 193542682 193542980 -49121373 - AluSc SINE Alu -14 295 1 531 278 140 21 chr1 193542980 193542998 -49121355 - L1MC/D LINE L1 -970 5389 5375 1577 177 7 11 chr1 193542998 193543281 -49121072 - AluJb SINE Alu -30 282 1 531 278 140 21 chr1 193543281 193543389 -49120964 - L1MC/D LINE L1 -984 5375 5199 761 106 61 53 chr1 193543746 193543878 -49120475 - FLAM_C SINE Alu 0 143 11 1744 120 53 40 chr1 193544253 193544552 -49119801 + AluSx SINE Alu 1 303 -9 626 138 15 54 chr1 193544700 193544728 -49119625 - AluSp/q SINE Alu -6 307 279 624 152 56 0 chr1 193544728 193544853 -49119500 - L1MA8 LINE L1 -4 6287 6156 626 138 15 54 chr1 193544853 193544954 -49119399 - AluSp/q SINE Alu -34 279 183 2512 86 8 128 chr1 193545058 193545087 -49119266 - L1MA8 LINE L1 -136 6155 6124 2199 95 7 0 chr1 193545087 193545393 -49118960 + AluSp SINE Alu 1 308 -5 2512 86 8 128 chr1 193545393 193545739 -49118614 - L1MA8 LINE L1 -167 6124 5846 732 173 0 24 chr1 193545739 193545866 -49118487 - FLAM_A SINE Alu -9 124 1 2512 86 8 128 chr1 193545866 193545964 -49118389 - L1MA8 LINE L1 -445 5846 5738 2268 83 0 13 chr1 193546052 193546366 -49117987 - AluY SINE Alu -1 310 1 24 32 0 0 chr1 193546458 193546489 -49117864 + AT_rich Low_complexity Low_complexity 1 31 0 294 208 111 0 chr1 193546606 193546678 -49117675 - MIR3 SINE MIR -10 198 119 1551 158 46 3 chr1 193546740 193547024 -49117329 - AluJb SINE Alu -16 296 1 2096 96 0 7 chr1 193547033 193547348 -49117005 - AluY SINE Alu 0 313 1 207 0 0 0 chr1 193547525 193547548 -49116805 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 231 344 0 32 chr1 193550122 193550279 -49114074 + GA-rich Low_complexity Low_complexity 4 155 0 974 155 0 7 chr1 193551375 193551530 -49112823 + FRAM SINE Alu 1 153 -23 581 133 0 76 chr1 193553328 193553456 -49110897 + AluSc SINE Alu 184 303 0 277 24 48 0 chr1 193554046 193554088 -49110265 + (CA)n Simple_repeat Simple_repeat 1 44 0 367 304 120 51 chr1 193554397 193554555 -49109798 - MIR3 SINE MIR -20 188 20 448 219 137 34 chr1 193554724 193554838 -49109515 + MER103 DNA DNA 2 136 -30 2076 138 0 0 chr1 193554838 193555150 -49109203 + AluSx SINE Alu 1 312 0 448 219 137 34 chr1 193555150 193555181 -49109172 + MER103 DNA DNA 136 162 -4 1781 156 7 0 chr1 193555187 193555482 -49108871 - AluJb SINE Alu -15 297 1 186 273 0 0 chr1 193555725 193555769 -49108584 + L2 LINE L2 3014 3057 -256 207 0 0 0 chr1 193556520 193556543 -49107810 + (T)n Simple_repeat Simple_repeat 1 23 0 217 209 0 0 chr1 193557664 193557707 -49106646 - L2 LINE L2 -2 3311 3269 2207 97 7 7 chr1 193558315 193558624 -49105729 - AluSg SINE Alu -1 309 1 899 133 0 15 chr1 193558649 193558784 -49105569 - FLAM_C SINE Alu 0 133 1 1226 104 0 0 chr1 193558794 193558967 -49105386 - AluSq SINE Alu -7 306 134 2375 60 0 7 chr1 193558967 193559269 -49105084 - AluYa5 SINE Alu -11 300 1 565 230 30 7 chr1 193559356 193559491 -49104862 - L1MD2 LINE L1 -1 6358 6221 703 154 0 52 chr1 193559507 193559643 -49104710 + AluJo SINE Alu 6 134 -178 1847 133 7 23 chr1 193559995 193560304 -49104049 + AluJb SINE Alu 1 304 -8 1242 171 14 9 chr1 193560513 193560735 -49103618 - MER58A DNA MER1_type 0 224 2 1638 161 3 7 chr1 193560821 193561150 -49103203 + AluJo SINE Alu 1 328 0 2239 104 0 0 chr1 193561245 193561544 -49102809 - AluSq SINE Alu -14 299 1 222 37 0 0 chr1 193561660 193561687 -49102666 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 307 280 126 7 chr1 193561857 193561925 -49102428 - L1MC4 LINE L1 -59 7983 7924 180 0 0 0 chr1 193561925 193561945 -49102408 + (CA)n Simple_repeat Simple_repeat 1 20 0 307 280 126 7 chr1 193561945 193562019 -49102334 - L1MC4 LINE L1 -118 7924 7824 180 111 0 0 chr1 193562019 193562046 -49102307 + (T)n Simple_repeat Simple_repeat 1 27 0 232 175 127 16 chr1 193562055 193562118 -49102235 - L1MC4 LINE L1 -209 7833 7764 1899 135 7 0 chr1 193562120 193562401 -49101952 + AluSx SINE Alu 1 283 -29 583 291 69 51 chr1 193563662 193564051 -49100302 + L1MCc LINE L1 57 452 -5971 836 10 0 0 chr1 193564340 193564436 -49099917 + AluYa5/8 SINE Alu 202 297 -13 1611 124 47 4 chr1 193564446 193564704 -49099649 + AluSq SINE Alu 38 306 -7 315 285 28 35 chr1 193564911 193565075 -49099278 + L1MCc LINE L1 1381 1707 -4900 557 255 0 7 chr1 193565470 193565611 -49098742 + AluSg/x SINE Alu 172 311 -1 1284 154 132 11 chr1 193565670 193565943 -49098410 - AluJb SINE Alu -6 306 1 613 304 114 63 chr1 193565944 193566418 -49097935 - L2 LINE L2 -586 2728 2231 4443 171 39 40 chr1 193566425 193567675 -49096678 + L1MB7 LINE L1 4257 5506 -678 2108 105 3 16 chr1 193567675 193567981 -49096372 + AluSx SINE Alu 1 302 -10 4443 171 39 40 chr1 193567981 193568344 -49096009 + L1MB7 LINE L1 5506 5868 -316 1581 103 0 0 chr1 193568346 193568559 -49095794 + AluSg/x SINE Alu 93 305 -7 281 377 119 23 chr1 193568559 193569222 -49095131 - L2 LINE L2 -1370 1944 1218 2088 92 39 0 chr1 193569861 193570145 -49094208 + AluSq SINE Alu 1 295 -18 201 288 0 17 chr1 193575836 193575895 -49088458 + GA-rich Low_complexity Low_complexity 2 59 0 490 291 142 18 chr1 193576615 193576897 -49087456 - L3b LINE CR1 -97 1486 1170 2547 88 0 0 chr1 193578209 193578516 -49085837 + AluSx SINE Alu 1 307 -5 2420 74 0 7 chr1 193579236 193579564 -49084789 + AluY SINE Alu 1 311 0 751 145 8 8 chr1 193579611 193579735 -49084618 + FLAM_A SINE Alu 9 132 -10 2251 123 0 0 chr1 193579846 193580147 -49084206 + AluSq SINE Alu 1 301 -12 395 231 22 112 chr1 193580154 193580341 -49084012 + MIR SINE MIR 30 206 -56 340 279 19 65 chr1 193582738 193582892 -49081461 + MIR SINE MIR 65 211 -51 2287 101 0 22 chr1 193584680 193584998 -49079355 - AluSx SINE Alu -1 311 1 187 286 32 0 chr1 193585137 193585200 -49079153 - L3b LINE CR1 -364 1219 1155 292 103 35 17 chr1 193586335 193586382 -49077971 + CT-rich Low_complexity Low_complexity 2 52 -8 1763 132 62 0 chr1 193586382 193586639 -49077714 - AluSx SINE Alu -39 273 1 370 143 0 14 chr1 193586775 193586845 -49077508 + FLAM SINE Alu 64 132 -1 4099 220 78 93 chr1 193586994 193587648 -49076705 - HAL1 LINE L1 -637 1870 1208 2200 109 0 7 chr1 193587648 193587941 -49076412 - AluSc SINE Alu -15 294 4 4099 220 78 93 chr1 193587941 193587955 -49076398 - HAL1 LINE L1 -1299 1208 1195 640 105 158 0 chr1 193587955 193588069 -49076284 - FLAM_C SINE Alu 0 133 2 4099 220 78 93 chr1 193588069 193588245 -49076108 - HAL1 LINE L1 -1312 1195 1018 1759 180 7 0 chr1 193588245 193588528 -49075825 - AluJo SINE Alu -25 287 3 4099 220 78 93 chr1 193588528 193589511 -49074842 - HAL1 LINE L1 -1489 1018 68 858 139 0 0 chr1 193589673 193589795 -49074558 - FLAM_C SINE Alu -9 124 3 211 267 89 30 chr1 193590334 193590435 -49073918 + L3b LINE CR1 1265 1371 -212 744 164 0 0 chr1 193590956 193591072 -49073281 + FLAM_C SINE Alu 2 117 -26 353 181 14 56 chr1 193591132 193591204 -49073149 + MIR SINE MIR 3 71 -191 2623 57 0 0 chr1 193591254 193591552 -49072801 - AluY SINE Alu -13 298 1 917 278 75 3 chr1 193592432 193592766 -49071587 - L1MCc LINE L1 -4900 1523 1166 1898 102 47 0 chr1 193592781 193593037 -49071316 - AluSq SINE Alu -8 305 38 908 10 0 0 chr1 193593047 193593147 -49071206 - AluYa5/8 SINE Alu -9 302 203 608 288 69 51 chr1 193593436 193593825 -49070528 - L1MCc LINE L1 -5971 452 57 371 195 0 13 chr1 193595489 193595566 -49068787 - MER116 DNA Mariner 0 80 5 1991 159 0 7 chr1 193595646 193595948 -49068405 - AluJb SINE Alu -9 303 4 2327 107 0 13 chr1 193595957 193596265 -49068088 - AluSq SINE Alu -9 304 1 1036 134 112 44 chr1 193596607 193596831 -49067522 + MER33 DNA MER1_type 1 243 -2342 2398 99 3 0 chr1 193596831 193597135 -49067218 - AluSg SINE Alu -5 305 1 1036 134 112 44 chr1 193597135 193597165 -49067188 + MER33 DNA MER1_type 243 270 -54 323 103 0 118 chr1 193597268 193597297 -49067056 + MER33 DNA MER1_type 304 322 -2302 2371 85 7 0 chr1 193597297 193597603 -49066750 + AluSc SINE Alu 1 308 -1 323 103 0 118 chr1 193597603 193597641 -49066712 + MER33 DNA MER1_type 322 363 0 2094 136 7 3 chr1 193598720 193599029 -49065324 + AluSx SINE Alu 1 310 -2 1535 214 46 41 chr1 193599790 193600178 -49064175 + MLT1B LTR MaLR 1 390 0 1960 155 10 10 chr1 193601731 193602041 -49062312 - MER58B DNA MER1_type -28 313 4 1737 169 3 31 chr1 193602224 193602544 -49061809 - AluJo SINE Alu -1 311 1 216 220 20 0 chr1 193602565 193602615 -49061738 + A-rich Low_complexity Low_complexity 3 53 0 27 81 0 0 chr1 193604010 193604072 -49060281 + AT_rich Low_complexity Low_complexity 1 62 0 1013 113 0 7 chr1 193604089 193604231 -49060122 - AluJb SINE Alu -171 141 1 423 262 53 65 chr1 193605319 193605582 -49058771 - MIR SINE MIR 0 262 3 1209 176 101 47 chr1 193606873 193607169 -49057184 + AluJo SINE Alu 1 312 0 904 9 35 0 chr1 193607519 193607634 -49056719 + (GAAA)n Simple_repeat Simple_repeat 4 122 0 2361 99 0 7 chr1 193608302 193608604 -49055749 - AluSc SINE Alu -9 300 1 276 149 0 0 chr1 193608937 193608984 -49055369 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1077 168 99 5 chr1 193608984 193609186 -49055167 - AluJb SINE Alu -7 305 85 380 337 96 7 chr1 193609832 193610102 -49054251 + L2 LINE L2 1793 2086 -1228 261 180 0 0 chr1 193610247 193610297 -49054056 + L2 LINE L2 3263 3312 -1 1134 171 13 39 chr1 193614496 193614730 -49049623 - AluJo SINE Alu 0 312 85 2287 108 0 0 chr1 193615268 193615563 -49048790 - AluSx SINE Alu -17 295 1 1912 134 34 10 chr1 193617412 193617710 -49046643 - AluJb SINE Alu -7 305 1 200 343 0 14 chr1 193617922 193617995 -49046358 + L2 LINE L2 3231 3302 -11 1438 204 18 0 chr1 193618301 193618576 -49045777 + AluJb SINE Alu 1 280 -32 203 0 0 36 chr1 193618577 193618605 -49045748 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 217 254 113 0 chr1 193618754 193618825 -49045528 + MIR SINE MIR 37 115 -147 322 250 19 39 chr1 193619964 193620068 -49044285 + L2 LINE L2 3160 3261 -11 414 94 0 0 chr1 193620068 193620132 -49044221 + (TAAA)n Simple_repeat Simple_repeat 3 66 0 209 174 130 0 chr1 193620149 193620195 -49044158 + L2 LINE L2 3228 3279 -34 2157 103 31 0 chr1 193620250 193620540 -49043813 + AluSp SINE Alu 1 299 -14 410 328 50 25 chr1 193620861 193621062 -49043291 - MIR SINE MIR -44 218 13 769 236 65 10 chr1 193621222 193621421 -49042932 + MIR SINE MIR 5 214 -48 514 205 17 8 chr1 193629041 193629158 -49035195 - MIR3 SINE MIR -3 205 88 222 62 0 0 chr1 193629706 193629738 -49034615 + (TG)n Simple_repeat Simple_repeat 2 33 0 1730 176 0 3 chr1 193629899 193630321 -49034032 - AluJo SINE Alu 0 421 1 1248 265 125 1 chr1 193630348 193630909 -49033444 + L2 LINE L2 2553 3187 -126 26 0 0 0 chr1 193630917 193630943 -49033410 + AT_rich Low_complexity Low_complexity 1 26 0 674 82 71 0 chr1 193630943 193631041 -49033312 - U6 snRNA snRNA -2 105 1 2430 94 0 0 chr1 193631050 193631348 -49033005 - AluY SINE Alu -13 298 1 2367 112 0 0 chr1 193631354 193631658 -49032695 - AluSx SINE Alu -8 304 1 191 260 0 0 chr1 193631715 193631765 -49032588 + L2 LINE L2 3262 3311 -2 207 320 117 23 chr1 193631784 193631912 -49032441 - MIR3 SINE MIR -65 143 4 1058 154 22 190 chr1 193631968 193632337 -49032016 + AluYb8 SINE Alu 1 307 -11 222 280 53 27 chr1 193633867 193633942 -49030411 - L2 LINE L2 -52 3220 3144 346 327 72 0 chr1 193634066 193634219 -49030134 + MIR SINE MIR 36 199 -63 2527 69 7 0 chr1 193634516 193634822 -49029531 - AluY SINE Alu -3 308 1 1880 90 17 0 chr1 193634850 193635084 -49029269 - AluSq SINE Alu -75 238 1 1773 159 0 91 chr1 193635682 193635822 -49028531 + AluJo SINE Alu 1 152 -160 2298 118 0 6 chr1 193635822 193636135 -49028218 - AluSq SINE Alu 0 313 3 1773 159 0 91 chr1 193636135 193636333 -49028020 + AluJo SINE Alu 152 308 -4 1412 254 58 0 chr1 193636520 193636867 -49027486 + LTR16C LTR ERVL 125 491 0 653 308 28 36 chr1 193637264 193637517 -49026836 - MIR SINE MIR -6 256 6 2184 119 6 19 chr1 193637774 193638085 -49026268 - AluSq SINE Alu -6 307 1 370 251 128 31 chr1 193638118 193638303 -49026050 - MIR SINE MIR -42 220 21 1812 149 16 29 chr1 193638458 193638773 -49025580 - AluJo SINE Alu -1 311 1 974 153 0 65 chr1 193638785 193638955 -49025398 - FRAM SINE Alu -16 160 2 200 178 0 44 chr1 193639842 193639887 -49024466 + MER91C DNA MER1_type 61 103 -37 961 280 93 37 chr1 193640319 193640779 -49023574 + L3 LINE CR1 1046 1531 -46 186 310 130 10 chr1 193640781 193640881 -49023472 - MER5B DNA MER1_type -27 151 40 4463 156 36 31 chr1 193640884 193641323 -49023030 + L1MB4 LINE L1 5025 5460 -720 2111 116 3 20 chr1 193641323 193641624 -49022729 - AluSx SINE Alu -16 296 1 4463 156 36 31 chr1 193641624 193641763 -49022590 + L1MB4 LINE L1 5460 5597 -583 248 0 31 0 chr1 193641763 193641795 -49022558 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4463 156 36 31 chr1 193641795 193642364 -49021989 + L1MB4 LINE L1 5597 6174 -6 810 226 39 25 chr1 193643659 193643863 -49020490 - MIR SINE MIR 0 262 56 408 318 115 9 chr1 193646290 193646507 -49017846 + MIR SINE MIR 9 248 -14 2038 155 3 0 chr1 193647547 193647851 -49016502 - AluJb SINE Alu -7 305 1 225 247 14 55 chr1 193648000 193648073 -49016280 + L2 LINE L2 3177 3246 -26 225 265 145 0 chr1 193648728 193648811 -49015542 + L2 LINE L2 3148 3242 -30 2244 99 14 0 chr1 193648988 193649282 -49015071 + AluSx SINE Alu 1 298 -14 1600 79 0 0 chr1 193650237 193650427 -49013926 + AluSx SINE Alu 1 190 -122 24 32 0 0 chr1 193650451 193650482 -49013871 + AT_rich Low_complexity Low_complexity 1 31 0 251 281 45 11 chr1 193651163 193651252 -49013101 - MIR3 SINE MIR -41 167 76 932 224 25 0 chr1 193652017 193652218 -49012135 + MER63A DNA MER1_type 1 206 -4 283 308 50 33 chr1 193652584 193652704 -49011649 - L2 LINE L2 -1 3312 3191 629 263 29 6 chr1 193653605 193653776 -49010577 - MIR SINE MIR -44 218 44 191 333 0 0 chr1 193653807 193653861 -49010492 + L2 LINE L2 3195 3248 -24 1849 150 17 20 chr1 193653868 193654161 -49010192 + AluJo SINE Alu 9 300 -12 191 347 74 0 chr1 193654508 193654629 -49009724 - MIR3 SINE MIR -31 177 48 1890 156 17 3 chr1 193655286 193655581 -49008772 - AluJb SINE Alu -13 299 1 208 298 0 0 chr1 193655771 193655818 -49008535 - MER91 DNA MER1_type -7 183 137 276 30 0 0 chr1 193655974 193656007 -49008346 + (TG)n Simple_repeat Simple_repeat 1 33 0 669 254 81 21 chr1 193656883 193657119 -49007234 + MIR SINE MIR 12 261 -1 278 26 26 0 chr1 193658154 193658193 -49006160 + (CA)n Simple_repeat Simple_repeat 2 41 0 712 172 0 0 chr1 193659334 193659456 -49004897 + FLAM_C SINE Alu 6 127 -16 517 254 24 0 chr1 193659494 193659620 -49004733 + MIR3 SINE MIR 79 207 -1 234 270 0 27 chr1 193659659 193659733 -49004620 - MER5A DNA MER1_type -40 149 78 918 242 10 5 chr1 193661480 193661678 -49002675 - MIR SINE MIR -33 229 31 480 35 0 0 chr1 193661715 193661773 -49002580 + (GA)n Simple_repeat Simple_repeat 1 58 0 4220 157 18 16 chr1 193661773 193661814 -49002539 - L1MB7 LINE L1 -30 6154 6115 1896 119 7 14 chr1 193661814 193662091 -49002262 + AluSq SINE Alu 38 312 -1 4220 157 18 16 chr1 193662091 193662813 -49001540 - L1MB7 LINE L1 -69 6115 5389 607 157 64 50 chr1 193662813 193662953 -49001400 - MER3 DNA MER1_type -41 168 27 10217 42 5 0 chr1 193663020 193663406 -49000947 - L1PA6 LINE L1 0 6154 5771 2649 58 3 0 chr1 193663406 193663715 -49000638 - AluY SINE Alu 0 311 2 10217 42 5 0 chr1 193663715 193665422 -48998931 - L1PA6 LINE L1 -383 5771 4074 193 276 50 72 chr1 193666196 193666377 -48997976 - L2 LINE L2 -213 3059 2883 345 187 58 137 chr1 193666379 193666518 -48997835 + MIR SINE MIR 28 155 -107 368 265 136 15 chr1 193666794 193666926 -48997427 - MIR3 SINE MIR 0 208 61 190 269 0 0 chr1 193667316 193667368 -48996985 + L3b LINE CR1 1331 1382 -201 427 257 169 6 chr1 193667533 193667716 -48996637 - MIR SINE MIR -30 232 20 214 203 31 31 chr1 193668209 193668273 -48996080 + CT-rich Low_complexity Low_complexity 5 68 0 192 339 113 9 chr1 193668352 193668467 -48995886 + MIR3 SINE MIR 9 135 -73 332 333 159 0 chr1 193669490 193669697 -48994656 - MIR SINE MIR -21 241 2 313 360 40 0 chr1 193671223 193671323 -48993030 + L2 LINE L2 3169 3272 0 363 323 31 0 chr1 193672542 193672672 -48991681 + MER117 DNA MER1_type 1 134 -63 265 349 16 16 chr1 193672808 193672934 -48991419 + L2 LINE L2 2881 3006 -266 247 360 23 0 chr1 193672943 193673029 -48991324 - L2 LINE L2 -1 3271 3184 1178 147 32 0 chr1 193673161 193673351 -48991002 + MER20 DNA MER1_type 2 197 -22 795 168 7 14 chr1 193674704 193674847 -48989506 - LTR47B LTR ERVL -89 354 213 417 341 44 18 chr1 193676746 193676972 -48987381 + MIR SINE MIR 31 262 0 198 218 333 0 chr1 193678627 193678705 -48985648 + MIR SINE MIR 41 144 -64 1447 117 140 15 chr1 193679185 193679450 -48984903 - AluSg1 SINE Alu -11 298 1 1285 97 6 0 chr1 193679467 193679642 -48984711 - AluY SINE Alu -14 297 122 2341 70 3 3 chr1 193679670 193679969 -48984384 + AluSq SINE Alu 1 299 -14 4122 174 121 87 chr1 193679977 193680489 -48983864 + L1MC3 LINE L1 6113 6607 365 203 0 37 0 chr1 193680489 193680516 -48983837 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 4122 174 121 87 chr1 193680516 193680557 -48983796 + L1MC3 LINE L1 6607 6645 403 250 241 152 0 chr1 193680557 193680636 -48983717 + MLT1F1 LTR MaLR 35 125 -442 4122 174 121 87 chr1 193680636 193680760 -48983593 + L1MC3 LINE L1 6645 5764 -478 1888 137 11 88 chr1 193680760 193681125 -48983228 + MER1B DNA MER1_type 1 337 0 4122 174 121 87 chr1 193681125 193681622 -48982731 + L1MC3 LINE L1 5763 6242 0 1029 226 0 34 chr1 193681660 193681899 -48982454 - MER8 DNA MER2_type 0 239 9 2105 105 3 32 chr1 193682136 193682308 -48982045 - AluSx SINE Alu -7 305 145 2238 105 0 3 chr1 193682308 193682612 -48981741 - AluSx SINE Alu -9 303 1 2105 105 3 32 chr1 193682612 193682753 -48981600 - AluSx SINE Alu -167 145 1 216 287 67 40 chr1 193682764 193682914 -48981439 - L2 LINE L2 -260 3012 2859 483 274 33 7 chr1 193682970 193683123 -48981230 - MER103 DNA DNA -2 164 8 244 302 223 8 chr1 193683293 193683535 -48980818 - L2 LINE L2 -560 2754 2461 643 139 51 51 chr1 193683698 193683726 -48980627 + L1MC3 LINE L1 6936 6963 -822 2359 143 62 45 chr1 193683726 193683908 -48980445 + MSTB LTR MaLR 1 178 -248 2321 78 13 0 chr1 193683908 193684217 -48980136 - AluSp SINE Alu 0 313 1 2359 143 62 45 chr1 193684217 193684453 -48979900 + MSTB LTR MaLR 178 426 0 643 139 51 51 chr1 193684453 193684582 -48979771 + L1MC3 LINE L1 6962 7093 -692 601 268 63 0 chr1 193684672 193684858 -48979495 + MIR SINE MIR 15 214 -48 735 315 18 5 chr1 193685892 193686114 -48978239 + MIR SINE MIR 35 259 -3 1596 195 19 7 chr1 193686515 193686822 -48977531 + AluSx SINE Alu 1 311 -1 2157 125 3 0 chr1 193687172 193687477 -48976876 - AluSx SINE Alu -6 306 1 2145 181 54 12 chr1 193689258 193689395 -48974958 + MSTB LTR MaLR 1 131 -295 1947 121 27 10 chr1 193689395 193689692 -48974661 - AluSx SINE Alu -10 302 1 2145 181 54 12 chr1 193689692 193689963 -48974390 + MSTB LTR MaLR 131 426 0 743 255 0 32 chr1 193691797 193691985 -48972368 + MIR SINE MIR 64 245 -17 575 223 59 74 chr1 193692058 193692314 -48972039 - MER112 DNA MER1_type -1 259 8 374 244 0 82 chr1 193692811 193692946 -48971407 - MIR SINE MIR -56 206 83 244 242 4 39 chr1 193693519 193693771 -48970582 + (CCA)n Simple_repeat Simple_repeat 1 243 0 309 227 15 15 chr1 193693778 193693910 -48970443 + (CACCAT)n Simple_repeat Simple_repeat 4 135 0 2241 67 40 7 chr1 193694034 193694334 -48970019 - AluY SINE Alu -1 310 1 23 54 0 0 chr1 193694444 193694481 -48969872 + AT_rich Low_complexity Low_complexity 1 37 0 525 317 160 21 chr1 193694680 193695335 -48969018 + L2 LINE L2 2545 3297 -16 426 264 118 0 chr1 193696891 193697035 -48967318 + MIR3 SINE MIR 30 190 -18 436 244 43 9 chr1 193697245 193697360 -48966993 + MIR3 SINE MIR 86 204 -4 263 277 0 30 chr1 193697894 193697995 -48966358 - L3b LINE CR1 -208 1375 1278 203 250 21 0 chr1 193699698 193699746 -48964607 + L2 LINE L2 3179 3227 -86 843 259 15 46 chr1 193699885 193700084 -48964269 - MIR SINE MIR -1 261 70 1579 106 4 4 chr1 193700084 193700310 -48964043 - AluSg/x SINE Alu -10 302 77 843 259 15 46 chr1 193700310 193700372 -48963981 - MIR SINE MIR -192 70 8 309 321 172 10 chr1 193701739 193701948 -48962405 - MIR SINE MIR 0 262 20 1106 181 66 12 chr1 193702336 193702579 -48961774 + MIR SINE MIR 6 261 -1 341 293 187 0 chr1 193702746 193702896 -48961457 - MIR SINE MIR -29 233 56 185 338 59 44 chr1 193703289 193703425 -48960928 + MIR SINE MIR 2 139 -123 382 193 48 0 chr1 193703697 193703780 -48960573 + MIR SINE MIR 176 262 0 1761 180 0 13 chr1 193704795 193705111 -48959242 - AluJo SINE Alu 0 312 1 331 225 95 154 chr1 193706325 193706415 -48957938 + MIR SINE MIR 33 110 -152 1830 139 0 4 chr1 193706415 193706695 -48957658 - AluJb SINE Alu -33 279 1 331 225 95 154 chr1 193706695 193706773 -48957580 + MIR SINE MIR 110 191 -71 515 295 101 22 chr1 193706964 193707232 -48957121 + L3 LINE CR1 1216 1504 -73 473 343 106 25 chr1 193709356 193709723 -48954630 + L3 LINE CR1 1174 1570 -7 2341 149 11 0 chr1 193711283 193711645 -48952708 + MER47A DNA MER2_type 1 366 0 217 200 0 0 chr1 193711768 193711808 -48952545 - MIR SINE MIR -60 148 109 204 254 15 15 chr1 193712989 193713056 -48951297 + CT-rich Low_complexity Low_complexity 1 67 0 468 0 0 0 chr1 193713284 193713336 -48951017 + (CA)n Simple_repeat Simple_repeat 2 53 0 198 0 0 0 chr1 193715001 193715023 -48949330 + (CGGGG)n Simple_repeat Simple_repeat 3 24 0 263 219 17 42 chr1 193715625 193715744 -48948609 + (CCG)n Simple_repeat Simple_repeat 3 118 0 256 121 0 61 chr1 193715836 193715902 -48948451 + (AGGGGG)n Simple_repeat Simple_repeat 2 63 0 184 241 25 0 chr1 193715885 193715964 -48948389 + GA-rich Low_complexity Low_complexity 2 82 0 * 219 273 148 21 chr1 193716868 193717013 -48947340 + MIR3 SINE MIR 3 170 -78 209 56 0 28 chr1 193718901 193718937 -48945416 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4174 28 0 0 chr1 193718937 193719438 -48944915 - L1PA4 LINE L1 -24 6131 5631 1849 153 76 3 chr1 193720765 193721053 -48943300 + AluSx SINE Alu 1 309 -3 756 164 13 38 chr1 193721053 193721370 -48942983 + GA-rich Low_complexity Low_complexity 1 309 0 597 170 29 23 chr1 193721384 193721404 -48942949 + GA-rich Low_complexity Low_complexity 3 21 -153 2371 83 13 16 chr1 193721404 193721716 -48942637 + AluY SINE Alu 1 311 0 597 170 29 23 chr1 193721716 193721866 -48942487 + GA-rich Low_complexity Low_complexity 21 174 0 277 149 0 21 chr1 193721867 193721914 -48942439 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 975 120 0 33 chr1 193721916 193721988 -48942365 + (GAAA)n Simple_repeat Simple_repeat 3 76 -104 1966 78 100 0 chr1 193721988 193722093 -48942260 + AluY SINE Alu 1 94 -217 207 0 0 0 chr1 193722093 193722116 -48942237 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1966 78 100 0 chr1 193722116 193722281 -48942072 + AluY SINE Alu 94 298 -13 975 120 0 33 chr1 193722281 193722392 -48941961 + (GAAA)n Simple_repeat Simple_repeat 76 180 0 533 225 12 12 chr1 193722395 193722564 -48941789 + GA-rich Low_complexity Low_complexity 1 169 0 1338 246 88 3 chr1 193723040 193723426 -48940927 - L2 LINE L2 -541 2773 2355 208 111 28 0 chr1 193723621 193723657 -48940696 + L2 LINE L2 3271 3307 -6 228 245 62 82 chr1 193725267 193725475 -48938878 + L2 LINE L2 2856 3059 -213 362 275 198 10 chr1 193725655 193725862 -48938491 - MIR SINE MIR -11 251 6 182 333 0 26 chr1 193727735 193727813 -48936540 - L3b LINE CR1 -186 1397 1322 274 152 0 91 chr1 193728977 193729044 -48935309 + MER91B DNA MER1_type 1 58 -132 286 350 0 10 chr1 193729051 193729154 -48935199 + L2 LINE L2 3164 3265 -7 2224 107 0 24 chr1 193729154 193729476 -48934877 + AluY SINE Alu 1 315 0 592 171 137 27 chr1 193730058 193730204 -48934149 + MIR SINE MIR 5 166 -96 857 288 8 12 chr1 193730210 193730450 -48933903 - MIR SINE MIR 0 262 24 252 244 231 0 chr1 193730441 193730519 -48933834 + MIR SINE MIR 161 256 -6 * 672 263 65 17 chr1 193731027 193731259 -48933094 + MIR SINE MIR 20 262 0 446 329 30 6 chr1 193731285 193731452 -48932901 + MIR3 SINE MIR 36 206 -2 248 185 62 31 chr1 193732540 193732605 -48931748 - L2 LINE L2 0 3272 3206 340 278 78 17 chr1 193732952 193733067 -48931286 + L2 LINE L2 3150 3271 -1 334 294 11 11 chr1 193736003 193736095 -48928258 + MIR SINE MIR 42 133 -75 1995 168 7 0 chr1 193736342 193736640 -48927713 - AluJb SINE Alu -12 300 1 193 323 0 0 chr1 193736832 193736897 -48927456 + MIR SINE MIR 183 247 -15 2263 114 0 16 chr1 193736924 193737231 -48927122 + AluSx SINE Alu 4 305 -7 771 212 5 27 chr1 193737235 193737419 -48926934 + FRAM SINE Alu 1 175 -1 1334 305 59 13 chr1 193739052 193739577 -48924776 - L3 LINE CR1 -120 1457 909 29 0 0 0 chr1 193739816 193739845 -48924508 + AT_rich Low_complexity Low_complexity 1 29 0 2580 65 0 10 chr1 193739854 193740162 -48924191 + AluY SINE Alu 2 306 -5 595 299 44 67 chr1 193742611 193742867 -48921486 + L1ME LINE L1 4976 5223 -923 2482 84 13 0 chr1 193742867 193743175 -48921178 + AluSq SINE Alu 1 312 -1 595 299 44 67 chr1 193743175 193743279 -48921074 + L1ME LINE L1 5223 5328 -818 1696 127 57 57 chr1 193743283 193743583 -48920770 + AluJb SINE Alu 5 304 -8 2257 116 0 31 chr1 193743730 193744048 -48920305 + AluSx SINE Alu 1 308 -4 244 268 0 0 chr1 193744078 193744149 -48920204 + L1ME LINE L1 5625 5695 -426 252 246 145 0 chr1 193744927 193744996 -48919357 + MIR SINE MIR 68 146 -116 484 235 30 95 chr1 193745689 193745889 -48918464 - MIR SINE MIR -62 200 14 1646 178 44 17 chr1 193746768 193747061 -48917292 - AluJo SINE Alu -11 301 1 243 61 0 0 chr1 193747221 193747254 -48917099 + (TG)n Simple_repeat Simple_repeat 1 33 0 357 43 0 0 chr1 193747256 193747303 -48917050 + (GA)n Simple_repeat Simple_repeat 2 48 0 326 259 126 52 chr1 193747529 193747664 -48916689 - L2 LINE L2 0 3272 3128 2480 99 3 0 chr1 193747715 193748027 -48916326 + AluSp SINE Alu 1 313 0 916 233 49 8 chr1 193748221 193748466 -48915887 + MIR SINE MIR 5 259 -3 557 275 121 5 chr1 193748723 193748930 -48915423 + MIR SINE MIR 20 250 -12 2268 132 0 0 chr1 193748939 193749249 -48915104 + AluSg SINE Alu 1 310 0 893 213 62 19 chr1 193749545 193749756 -48914597 - MIR SINE MIR -24 238 19 579 269 47 0 chr1 193750479 193750628 -48913725 + MIR SINE MIR 40 195 -67 2140 106 4 0 chr1 193750646 193750921 -48913432 - AluSx SINE Alu -36 276 1 189 400 69 8 chr1 193751267 193751397 -48912956 + L3b LINE CR1 1407 1544 -39 385 242 13 3 chr1 193751637 193751720 -48912633 + (CA)n Simple_repeat Simple_repeat 1 82 -899 1757 175 30 30 chr1 193751720 193752022 -48912331 + MLT1A1 LTR MaLR 1 305 -60 1759 151 16 29 chr1 193752022 193752333 -48912020 - AluJb SINE Alu -5 307 1 1757 175 30 30 chr1 193752333 193752395 -48911958 + MLT1A1 LTR MaLR 304 365 0 385 242 13 3 chr1 193752395 193752609 -48911744 + (CA)n Simple_repeat Simple_repeat 82 981 0 183 290 35 55 chr1 193753936 193754081 -48910272 - L3b LINE CR1 -130 1453 1312 537 315 88 0 chr1 193756240 193756421 -48907932 + MIR SINE MIR 52 248 -14 666 282 122 64 chr1 193756427 193756586 -48907767 - L1ME4a LINE L1 -2 6119 5971 405 0 0 0 chr1 193756586 193756631 -48907722 + (CA)n Simple_repeat Simple_repeat 2 46 0 666 282 122 64 chr1 193756631 193756710 -48907643 - L1ME4a LINE L1 -150 5971 5898 2325 113 0 0 chr1 193756710 193757010 -48907343 + AluSx SINE Alu 1 300 -12 666 282 122 64 chr1 193757010 193757087 -48907266 - L1ME4a LINE L1 -223 5898 5827 2326 117 3 0 chr1 193757087 193757394 -48906959 + AluSx SINE Alu 1 308 -4 666 282 122 64 chr1 193757394 193757658 -48906695 - L1ME4a LINE L1 -294 5827 5504 207 286 135 52 chr1 193757810 193758002 -48906351 + L3b LINE CR1 1293 1500 -83 292 361 19 0 chr1 193759590 193759698 -48904655 + MIR SINE MIR 20 129 -133 417 99 22 44 chr1 193759698 193759789 -48904564 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 2260 112 3 16 chr1 193759793 193760107 -48904246 - AluSx SINE Alu -2 310 1 301 220 67 73 chr1 193760109 193760146 -48904207 + MIR SINE MIR 114 150 -112 1962 148 7 3 chr1 193760146 193760444 -48903909 + AluJb SINE Alu 1 299 -13 301 220 67 73 chr1 193760444 193760556 -48903797 + MIR SINE MIR 150 262 0 303 173 100 10 chr1 193760664 193760766 -48903587 + MIR SINE MIR 45 153 -62 306 266 0 13 chr1 193761296 193761375 -48902978 - L3b LINE CR1 -197 1386 1309 228 100 0 0 chr1 193761824 193761864 -48902489 + (A)n Simple_repeat Simple_repeat 1 40 0 1894 123 51 10 chr1 193761879 193762172 -48902181 + AluSg SINE Alu 6 310 0 206 327 48 42 chr1 193762172 193762340 -48902013 + L3b LINE CR1 1224 1392 -191 1630 199 14 35 chr1 193762691 193763012 -48901341 - MLT1A1 LTR MaLR -2 363 50 1948 166 0 3 chr1 193763012 193763302 -48901051 - AluJb SINE Alu -23 289 1 1630 199 14 35 chr1 193763302 193763351 -48901002 - MLT1A1 LTR MaLR -315 50 1 1446 107 13 0 chr1 193763853 193764078 -48900275 - L1MD3 LINE L1 -13 7982 7755 210 190 35 17 chr1 193765809 193765867 -48898486 - MIR SINE MIR -65 143 85 335 247 14 0 chr1 193766260 193766333 -48898020 + L2 LINE L2 2985 3058 -214 259 240 0 0 chr1 193766448 193766498 -48897855 + L2 LINE L2 3248 3297 -16 472 312 86 47 chr1 193767221 193767376 -48896977 + L2 LINE L2 2957 3104 -168 2357 95 0 0 chr1 193767376 193767661 -48896692 + AluSq SINE Alu 1 335 0 329 20 20 20 chr1 193767661 193767711 -48896642 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 472 312 86 47 chr1 193767711 193767854 -48896499 + L2 LINE L2 3104 3269 -3 894 296 21 0 chr1 193768278 193768521 -48895832 - MIR SINE MIR 0 262 15 404 130 0 0 chr1 193770337 193770406 -48893947 + LTR30 LTR ERV1 552 620 -102 385 248 80 15 chr1 193771956 193772093 -48892260 + MIR3 SINE MIR 3 148 -60 183 250 0 62 chr1 193772162 193772226 -48892127 + L2 LINE L2 3147 3206 -66 217 262 0 16 chr1 193773268 193773329 -48891024 - MIR3 SINE MIR -24 184 125 279 374 39 10 chr1 193773344 193773550 -48890803 - L2 LINE L2 0 3313 3102 578 195 262 0 chr1 193773922 193774086 -48890267 + L1ME1 LINE L1 5955 6161 -5 308 324 31 54 chr1 193774170 193774309 -48890044 + MIR SINE MIR 20 156 -93 2241 136 0 0 chr1 193774309 193774618 -48889735 + AluSx SINE Alu 1 309 -3 308 324 31 54 chr1 193774618 193774650 -48889703 + MIR SINE MIR 156 187 -62 475 223 87 24 chr1 193774696 193774710 -48889643 - MIR SINE MIR 0 262 250 1852 191 0 0 chr1 193774710 193775019 -48889334 + AluSx SINE Alu 1 309 -3 475 223 87 24 chr1 193775019 193775161 -48889192 - MIR SINE MIR -12 250 96 3868 170 42 39 chr1 193775314 193775354 -48888999 - L1MB7 LINE L1 -19 6165 6127 2359 117 0 0 chr1 193775354 193775653 -48888700 + AluSx SINE Alu 1 299 -13 3868 170 42 39 chr1 193775653 193775860 -48888493 - L1MB7 LINE L1 -57 6127 5922 2071 125 3 20 chr1 193775860 193776157 -48888196 + AluJo SINE Alu 12 303 -9 3868 170 42 39 chr1 193776157 193776789 -48887564 - L1MB7 LINE L1 -262 5922 5282 1689 214 7 0 chr1 193776789 193777097 -48887256 - AluJb SINE Alu -1 311 2 3868 170 42 39 chr1 193777097 193777229 -48887124 - L1MB7 LINE L1 -902 5282 5152 283 94 24 176 chr1 193777230 193777274 -48887079 - L1MB2 LINE L1 0 6171 6144 1855 154 23 23 chr1 193777274 193777573 -48886780 - AluJo SINE Alu -13 299 1 283 94 24 176 chr1 193777573 193777613 -48886740 - L1MB2 LINE L1 -27 6144 6100 557 211 23 59 chr1 193777616 193777809 -48886544 + MLT1B LTR MaLR 1 184 -190 238 211 18 18 chr1 193777809 193777866 -48886487 + CT-rich Low_complexity Low_complexity 1 57 0 1121 174 15 0 chr1 193777879 193778075 -48886278 + MLT1B LTR MaLR 192 390 0 4217 175 24 8 chr1 193778085 193779050 -48885303 - L1MB3 LINE L1 -76 6107 5129 251 355 19 39 chr1 193780226 193780381 -48883972 + MIR SINE MIR 3 154 -108 399 315 8 0 chr1 193780458 193780585 -48883768 - MIR3 SINE MIR -2 206 79 198 246 18 18 chr1 193780853 193780910 -48883443 - MIR SINE MIR -87 121 65 387 272 144 19 chr1 193781876 193782134 -48882219 + LTR33A LTR ERVL 25 281 -242 347 281 0 0 chr1 193782173 193782269 -48882084 + LTR33A LTR ERVL 400 495 -28 1851 52 0 0 chr1 193782395 193782606 -48881747 - AluY SINE Alu -19 292 82 2228 122 0 0 chr1 193782652 193782955 -48881398 - AluSx SINE Alu -9 303 1 261 317 245 13 chr1 193782962 193783334 -48881019 + L2 LINE L2 2201 2658 -656 269 320 39 39 chr1 193783519 193783647 -48880706 + L2 LINE L2 2924 3051 -221 2286 104 10 0 chr1 193783712 193784011 -48880342 - AluSx SINE Alu -10 302 1 3056 178 50 111 chr1 193784140 193784158 -48880195 + L1MD1 LINE L1 28 46 -6494 3348 125 10 47 chr1 193784158 193784733 -48879620 + MLT2B3 LTR ERVL 1 554 0 3056 178 50 111 chr1 193784733 193784846 -48879507 + L1MD1 LINE L1 46 164 -6376 2226 133 0 0 chr1 193784846 193785140 -48879213 + AluSx SINE Alu 1 294 -18 3056 178 50 111 chr1 193785140 193785355 -48878998 + L1MD1 LINE L1 164 391 -6149 2267 116 0 0 chr1 193785355 193785649 -48878704 - AluSq SINE Alu -17 296 3 3056 178 50 111 chr1 193785649 193786128 -48878225 + L1MD1 LINE L1 391 804 -5736 3167 168 54 29 chr1 193786139 193786894 -48877459 + L1MD1 LINE L1 1276 2049 -4491 1497 234 48 25 chr1 193786865 193787348 -48877005 + L1MD1 LINE L1 5196 5689 -851 * 839 188 25 31 chr1 193787351 193787531 -48876822 + AluJb SINE Alu 137 312 0 4862 152 37 13 chr1 193787531 193787911 -48876442 + L1MD1 LINE L1 5704 6073 -563 747 168 15 0 chr1 193787911 193788042 -48876311 - FLAM_A SINE Alu 0 133 1 4862 152 37 13 chr1 193788042 193788571 -48875782 + L1MD1 LINE L1 6073 6635 -1 276 322 34 8 chr1 193789880 193789998 -48874355 + LTR67 LTR ERVL 429 549 -8 190 210 86 62 chr1 193790175 193790256 -48874097 - L3b LINE CR1 -130 1453 1371 1372 164 0 14 chr1 193790424 193790644 -48873709 - AluJo SINE Alu -11 301 85 451 269 0 0 chr1 193790765 193790873 -48873480 - MIR SINE MIR 0 262 155 207 100 0 0 chr1 193791098 193791128 -48873225 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 228 67 0 0 chr1 193791160 193791190 -48873163 + (CA)n Simple_repeat Simple_repeat 1 30 0 2564 78 0 3 chr1 193791834 193792143 -48872210 + AluSg SINE Alu 1 308 -2 182 212 0 0 chr1 193792148 193792181 -48872172 - MIR SINE MIR -145 63 31 207 200 0 22 chr1 193792465 193792510 -48871843 + (TGAG)n Simple_repeat Simple_repeat 4 47 0 281 362 0 0 chr1 193792574 193792726 -48871627 - L1ME LINE L1 -331 5790 5639 197 176 0 147 chr1 193793017 193793085 -48871268 + L2 LINE L2 3241 3298 -15 278 264 104 80 chr1 193793144 193793307 -48871046 - MIR SINE MIR -13 249 83 372 253 115 66 chr1 193794492 193794674 -48869679 - MIR SINE MIR -59 203 13 538 281 61 0 chr1 193795735 193795786 -48868567 - MIR SINE MIR -14 248 202 186 43 0 0 chr1 193795786 193795809 -48868544 + (TTATA)n Simple_repeat Simple_repeat 2 24 0 538 281 61 0 chr1 193795809 193795921 -48868432 - MIR SINE MIR -60 202 75 282 219 198 38 chr1 193797544 193797782 -48866571 + L1ME4a LINE L1 5782 6057 -64 269 271 82 111 chr1 193799256 193799368 -48864985 - MIR SINE MIR -10 252 138 1896 199 47 16 chr1 193799368 193799855 -48864498 + MLT1D LTR MaLR 1 502 -3 2251 108 0 26 chr1 193799864 193800169 -48864184 - AluSx SINE Alu -15 297 1 269 271 82 111 chr1 193800169 193800253 -48864100 - MIR SINE MIR -132 130 52 180 318 15 0 chr1 193800254 193800320 -48864033 - L2 LINE L2 -4 3309 3243 243 157 0 0 chr1 193800323 193800374 -48863979 + CT-rich Low_complexity Low_complexity 4 54 0 1828 192 0 6 chr1 193800376 193800689 -48863664 - AluJo SINE Alu -1 311 1 469 300 50 11 chr1 193800787 193800967 -48863386 - MIR SINE MIR -56 206 20 247 272 97 26 chr1 193801482 193801596 -48862757 - MIR SINE MIR -34 228 107 1807 148 3 60 chr1 193802182 193802513 -48861840 + AluJo SINE Alu 1 312 0 188 256 39 64 chr1 193802743 193802821 -48861532 - L2 LINE L2 -71 3201 3126 304 270 265 11 chr1 193802933 193803122 -48861231 - MIR SINE MIR -6 256 20 224 275 160 15 chr1 193805204 193805335 -48859018 - MIR SINE MIR -10 252 103 582 391 44 173 chr1 193805350 193805466 -48858887 - MIR SINE MIR -25 237 146 3873 130 20 26 chr1 193805466 193805757 -48858596 + LTR48B LTR ERV1 1 292 -352 2459 74 3 0 chr1 193805757 193806054 -48858299 + AluSg SINE Alu 2 299 -11 3873 130 20 26 chr1 193806054 193806410 -48857943 + LTR48B LTR ERV1 292 644 0 582 391 44 173 chr1 193806410 193806522 -48857831 - MIR SINE MIR -116 146 21 203 312 37 58 chr1 193807869 193808058 -48856295 + L2 LINE L2 2949 3133 -139 1852 150 27 20 chr1 193808068 193808368 -48855985 - AluJo SINE Alu -10 302 1 198 118 0 0 chr1 193808448 193808482 -48855871 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 388 279 39 0 chr1 193809105 193809209 -48855144 - MIR SINE MIR -64 144 37 2028 175 25 60 chr1 193809267 193809748 -48854605 + MLT1C LTR MaLR 1 464 -3 204 309 60 0 chr1 193809748 193809832 -48854521 - MIR SINE MIR -120 142 54 319 330 0 0 chr1 193810058 193810167 -48854186 - L2 LINE L2 0 3313 3205 1497 145 120 17 chr1 193810621 193810980 -48853373 + L1ME2 LINE L1 5767 6162 -2 320 143 0 0 chr1 193811897 193811946 -48852407 - MIR SINE MIR -108 154 106 232 195 0 0 chr1 193812173 193812214 -48852139 - L2 LINE L2 -6 3307 3267 2038 168 0 0 chr1 193812978 193813276 -48851077 + AluJo SINE Alu 2 299 -13 520 322 44 10 chr1 193813317 193813522 -48850831 + MIR SINE MIR 8 219 -43 21 0 0 0 chr1 193813973 193813994 -48850359 + AT_rich Low_complexity Low_complexity 1 21 0 1815 167 7 7 chr1 193814034 193814333 -48850020 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr1 193814336 193814359 -48849994 + AT_rich Low_complexity Low_complexity 1 23 0 1841 167 0 4 chr1 193814677 193814958 -48849395 + AluJb SINE Alu 1 280 -32 1031 97 0 7 chr1 193814958 193815113 -48849240 + (GAAA)n Simple_repeat Simple_repeat 2 155 0 1078 170 14 104 chr1 193815599 193815888 -48848465 - AluJo SINE Alu -4 308 46 211 169 0 85 chr1 193816026 193816085 -48848268 + MIR SINE MIR 117 170 -92 2232 118 0 10 chr1 193816093 193816397 -48847956 + AluSg1 SINE Alu 1 301 -8 465 246 8 8 chr1 193816523 193816645 -48847708 + MIR SINE MIR 91 212 -50 2428 74 0 7 chr1 193816896 193817194 -48847159 + AluSp SINE Alu 1 296 -17 2054 117 0 4 chr1 193817301 193817575 -48846778 - AluSg SINE Alu -36 274 2 353 222 157 39 chr1 193817577 193817730 -48846623 + L1MC4 LINE L1 7871 8041 -1 676 120 0 10 chr1 193818634 193818734 -48845619 + AluS SINE Alu 3 101 -211 205 27 81 0 chr1 193818789 193818826 -48845527 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 249 301 0 0 chr1 193819078 193819151 -48845202 - MIR SINE MIR -109 153 81 491 234 60 158 chr1 193819353 193819772 -48844581 + L3 LINE CR1 1189 1566 -11 529 244 15 8 chr1 193819933 193820064 -48844289 + MER5B DNA MER1_type 2 133 -45 275 292 100 8 chr1 193820195 193820315 -48844038 - MIR SINE MIR -112 150 20 224 275 160 15 chr1 193822397 193822528 -48841825 - MIR SINE MIR -10 252 103 369 244 17 52 chr1 193822543 193822658 -48841695 - MIR SINE MIR -25 237 127 1770 132 7 14 chr1 193822659 193822947 -48841406 + LTR48B LTR ERV1 1 286 -358 2372 93 0 3 chr1 193822950 193823251 -48841102 + AluSq SINE Alu 2 301 -12 2366 103 0 0 chr1 193823646 193823947 -48840406 + AluSg SINE Alu 5 305 -5 297 333 0 33 chr1 193824585 193824705 -48839648 + MIR SINE MIR 49 164 -98 2345 95 0 3 chr1 193824839 193825144 -48839209 + AluSp SINE Alu 9 312 -1 252 0 0 0 chr1 193825458 193825486 -48838867 + (TG)n Simple_repeat Simple_repeat 2 29 0 471 306 77 30 chr1 193825862 193826097 -48838256 - MIR SINE MIR -10 252 7 23 33 0 0 chr1 193826843 193826873 -48837480 + GC_rich Low_complexity Low_complexity 1 30 0 393 22 0 0 chr1 193828452 193828498 -48835855 + (TG)n Simple_repeat Simple_repeat 1 46 0 2141 124 0 0 chr1 193828500 193828806 -48835547 - AluSx SINE Alu 0 306 1 1770 148 21 31 chr1 193828816 193829106 -48835247 - AluJb SINE Alu -25 287 1 2032 131 7 13 chr1 193831023 193831329 -48833024 + AluSx SINE Alu 1 304 -8 240 179 0 119 chr1 193831853 193831920 -48832433 + MER117 DNA MER1_type 113 171 -26 2375 73 20 7 chr1 193832010 193832312 -48832041 + AluY SINE Alu 1 306 -5 2098 112 0 3 chr1 193832404 193832716 -48831637 + AluSx SINE Alu 1 311 0 287 287 93 0 chr1 193832759 193832867 -48831486 - L2 LINE L2 -7 3306 3189 2315 86 9 16 chr1 193833368 193833683 -48830670 - AluSq SINE Alu 0 313 1 254 281 99 103 chr1 193834719 193834961 -48829392 + L2 LINE L2 3012 3252 -20 677 236 20 81 chr1 193834973 193835025 -48829328 - MIR SINE MIR -16 246 192 1640 177 57 14 chr1 193835025 193835307 -48829046 - AluJb SINE Alu -18 294 1 677 236 20 81 chr1 193835307 193835500 -48828853 - MIR SINE MIR -70 192 16 486 264 18 0 chr1 193836039 193836149 -48828204 - MER81 DNA DNA -2 112 1 271 246 32 63 chr1 193836622 193836748 -48827605 - L2 LINE L2 -234 3038 2917 564 115 0 0 chr1 193836876 193836980 -48827373 + (CA)n Simple_repeat Simple_repeat 1 104 0 32 0 0 0 chr1 193836988 193837020 -48827333 + AT_rich Low_complexity Low_complexity 1 32 0 290 315 74 58 chr1 193837030 193837233 -48827120 - L1ME4a LINE L1 -27 6094 5896 2094 104 7 0 chr1 193837233 193837502 -48826851 - AluSg SINE Alu -39 271 1 290 315 74 58 chr1 193837502 193837746 -48826607 - L1ME4a LINE L1 -225 5896 5640 302 0 0 26 chr1 193837746 193837785 -48826568 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2112 116 7 0 chr1 193837787 193838063 -48826290 - AluSg SINE Alu -32 278 1 466 266 161 18 chr1 193838303 193838521 -48825832 + MIR SINE MIR 12 260 -2 321 313 81 50 chr1 193838596 193838794 -48825559 - MIR SINE MIR -3 259 56 193 298 8 66 chr1 193839533 193839654 -48824699 - MIR SINE MIR -63 199 86 2266 107 30 0 chr1 193839709 193840008 -48824345 + AluSx SINE Alu 1 308 -4 374 204 51 88 chr1 193840449 193840586 -48823767 + L2 LINE L2 3181 3312 -1 345 281 36 0 chr1 193840843 193840940 -48823413 + MIR3 SINE MIR 59 160 -48 327 253 48 54 chr1 193840940 193841106 -48823247 + MER5B DNA MER1_type 1 165 -13 223 182 0 18 chr1 193841296 193841351 -48823002 + (CA)n Simple_repeat Simple_repeat 1 54 0 1172 93 22 6 chr1 193842745 193842927 -48821426 - L1PA12 LINE L1 0 6168 5984 42 20 0 0 chr1 193843003 193843052 -48821301 + AT_rich Low_complexity Low_complexity 1 49 0 183 255 59 0 chr1 193843069 193843120 -48821233 - MIR3 SINE MIR -50 158 105 2320 106 3 0 chr1 193843397 193843698 -48820655 - AluSg SINE Alu -8 302 1 312 206 178 0 chr1 193843748 193843821 -48820532 - MER58 DNA MER1_type -2 2418 128 189 0 0 0 chr1 193843821 193843842 -48820511 + (A)n Simple_repeat Simple_repeat 1 21 0 289 234 0 31 chr1 193843850 193843914 -48820439 - MER58 DNA MER1_type -160 55 1 472 171 219 0 chr1 193844587 193844710 -48819643 + MIR SINE MIR 113 262 0 554 274 10 56 chr1 193844724 193844921 -48819432 - MIR3 SINE MIR 0 208 21 941 214 6 6 chr1 193845238 193845416 -48818937 + MER45A DNA AcHobo 1 178 0 1275 172 0 23 chr1 193845558 193845779 -48818574 + AluJb SINE Alu 87 302 -10 398 313 177 20 chr1 193846496 193846694 -48817659 + MIR SINE MIR 2 230 -32 779 215 11 11 chr1 193848040 193848217 -48816136 + MER5B DNA MER1_type 2 178 0 1278 148 4 21 chr1 193848415 193848651 -48815702 + L1MB3 LINE L1 5944 6175 -8 2302 219 13 37 chr1 193848804 193849420 -48814933 + L1M4 LINE L1 3794 4394 -1752 312 293 58 64 chr1 193850100 193850288 -48814065 + MIR3 SINE MIR 7 193 -15 1872 104 85 0 chr1 193850531 193850791 -48813562 - AluSq SINE Alu -31 282 1 182 372 0 12 chr1 193851419 193851505 -48812848 - MIR SINE MIR -117 145 61 189 150 25 25 chr1 193852643 193852683 -48811670 - MIR SINE MIR -66 142 103 182 179 26 0 chr1 193853785 193853824 -48810529 + L2 LINE L2 3213 3252 -20 214 284 0 15 chr1 193853885 193853952 -48810401 + G-rich Low_complexity Low_complexity 2 67 0 974 294 8 0 chr1 193854493 193854745 -48809608 + MIR SINE MIR 9 262 0 742 95 0 0 chr1 193855223 193855328 -48809025 + L1PA16 LINE L1 6057 6161 -5 203 276 8 104 chr1 193856488 193856622 -48807731 + MIR SINE MIR 118 238 -24 966 257 57 4 chr1 193857223 193857468 -48806885 - MIR SINE MIR 0 262 5 587 197 82 14 chr1 193857550 193857697 -48806656 - L1MB8 LINE L1 -1 6177 6021 472 171 219 0 chr1 193857712 193857835 -48806518 + MIR SINE MIR 113 262 0 554 274 10 56 chr1 193857849 193858046 -48806307 - MIR3 SINE MIR 0 208 21 969 215 6 0 chr1 193858363 193858540 -48805813 + MER45A DNA AcHobo 1 178 0 1275 172 0 23 chr1 193858681 193858902 -48805451 + AluJb SINE Alu 87 302 -10 378 318 177 20 chr1 193859620 193859818 -48804535 + MIR SINE MIR 2 230 -32 278 132 19 0 chr1 193861683 193861736 -48802617 + A-rich Low_complexity Low_complexity 1 54 0 2198 108 28 0 chr1 193861955 193862243 -48802110 + AluSq SINE Alu 1 296 -17 1560 189 48 7 chr1 193862405 193862700 -48801653 + AluJb SINE Alu 3 308 0 211 283 138 7 chr1 193862783 193862921 -48801432 + L2 LINE L2 1819 1974 -1340 24 0 0 0 chr1 193862940 193862964 -48801389 + AT_rich Low_complexity Low_complexity 1 24 0 314 156 0 47 chr1 193863021 193863085 -48801268 - MLT2B1 LTR ERVL -3 517 457 2065 167 31 74 chr1 193863118 193863645 -48800708 - MLT2B1 LTR ERVL -21 464 1 2498 75 0 13 chr1 193863682 193863990 -48800363 + AluY SINE Alu 1 304 -7 635 291 107 15 chr1 193864131 193864287 -48800066 - L1ME3A LINE L1 -234 5936 5796 2226 121 7 0 chr1 193864287 193864592 -48799761 - AluSg SINE Alu -3 307 1 635 291 107 15 chr1 193864592 193864969 -48799384 - L1ME3A LINE L1 -374 5796 5271 1563 210 50 32 chr1 193864992 193865344 -48799009 - L1MB8 LINE L1 -1 6177 5865 2569 72 0 0 chr1 193865344 193865650 -48798703 - AluY SINE Alu -5 306 1 1563 210 50 32 chr1 193865650 193865781 -48798572 - L1MB8 LINE L1 -313 5865 5738 424 221 23 23 chr1 193865789 193865920 -48798433 - L1MCc LINE L1 -4868 2254 2124 2375 119 0 0 chr1 193865922 193866234 -48798119 - AluSx SINE Alu 0 312 1 989 143 7 0 chr1 193866234 193866374 -48797979 - AluSq/x SINE Alu -172 141 1 794 290 77 26 chr1 193866395 193866979 -48797374 - L1MCc LINE L1 -4889 1534 1282 2529 193 36 61 chr1 193867060 193867177 -48797176 - L1MEc LINE L1 -3680 2746 2627 1549 148 0 4 chr1 193867177 193867407 -48796946 - AluJb SINE Alu -2 310 82 2529 193 36 61 chr1 193867407 193867655 -48796698 - L1MEc LINE L1 -3799 2627 2374 2329 117 0 0 chr1 193867655 193867964 -48796389 - AluSx SINE Alu -3 309 1 2529 193 36 61 chr1 193867964 193868346 -48796007 - L1MEc LINE L1 -4052 2374 2054 2455 96 0 0 chr1 193868346 193868658 -48795695 - AluSx SINE Alu 0 312 1 2529 193 36 61 chr1 193868658 193868729 -48795624 - L1MEc LINE L1 -4372 2054 1983 299 310 42 0 chr1 193868719 193868861 -48795492 - L1MEc LINE L1 -4766 1660 1513 * 375 229 8 16 chr1 193868861 193868983 -48795370 - L1MEc LINE L1 -4653 1743 1623 804 169 0 63 chr1 193869043 193869152 -48795201 + AluJo/FLAM SINE Alu 1 101 -211 1694 98 0 0 chr1 193869152 193869367 -48794986 - AluSq SINE Alu -14 299 85 804 169 0 63 chr1 193869367 193869399 -48794954 + AluJo/FLAM SINE Alu 101 133 -179 605 140 0 0 chr1 193869401 193869494 -48794859 + FRAM SINE Alu 47 139 -37 882 206 12 61 chr1 193869539 193869786 -48794567 - L1MB7 LINE L1 -2 6182 5948 1007 231 86 4 chr1 193869813 193870082 -48794271 - L1MEc LINE L1 -6070 326 36 2099 138 7 0 chr1 193870110 193870415 -48793938 + AluSx SINE Alu 5 311 -1 222 118 0 0 chr1 193870423 193870457 -48793896 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1824 173 0 7 chr1 193870593 193870882 -48793471 + AluJo SINE Alu 25 311 -1 300 122 0 0 chr1 193870899 193870940 -48793413 + MER4E LTR ERV1 653 693 -73 23 54 0 0 chr1 193870940 193870977 -48793376 + AT_rich Low_complexity Low_complexity 1 37 0 2391 97 10 0 chr1 193870977 193871287 -48793066 + AluSq SINE Alu 1 313 0 2703 111 15 8 chr1 193871294 193871692 -48792661 + MER84 LTR ERVI 1 401 -106 698 97 8 112 chr1 193872275 193872363 -48791990 + MER84 LTR ERVI 388 459 -48 2372 83 0 26 chr1 193872363 193872675 -48791678 - AluSq SINE Alu -8 305 2 698 97 8 112 chr1 193872675 193872720 -48791633 + MER84 LTR ERVI 459 507 0 311 195 73 12 chr1 193872720 193872802 -48791551 + L1MB8 LINE L1 5756 5842 -336 3220 131 45 23 chr1 193872803 193873211 -48791142 + LTR49 LTR ERV1 1 427 -168 2195 122 0 10 chr1 193873211 193873514 -48790839 + AluSx SINE Alu 1 300 -12 3220 131 45 23 chr1 193873514 193873677 -48790676 + LTR49 LTR ERV1 427 585 -10 448 176 0 92 chr1 193873679 193873745 -48790608 + L1MB8 LINE L1 5871 5923 -261 2002 115 0 56 chr1 193873745 193874068 -48790285 + AluJb SINE Alu 1 305 -7 448 176 0 92 chr1 193874068 193874120 -48790233 + L1MB8 LINE L1 5923 5978 -206 1509 209 89 96 chr1 193874120 193874560 -48789793 - LTR8 LTR ERV1 0 691 291 715 197 0 0 chr1 193874571 193874703 -48789650 - AluSg/x SINE Alu -24 288 157 268 349 3 37 chr1 193874721 193874895 -48789458 + CT-rich Low_complexity Low_complexity 4 285 0 2163 69 0 11 chr1 193875202 193875476 -48788877 - AluSx SINE Alu -39 273 3 1294 165 0 54 chr1 193875487 193875747 -48788606 - LTR8 LTR ERV1 -445 246 1 752 157 19 6 chr1 193875775 193875934 -48788419 + L1MB8 LINE L1 6006 6166 -12 644 120 19 0 chr1 193876057 193876165 -48788188 + CT-rich Low_complexity Low_complexity 2 111 0 203 337 67 11 chr1 193876165 193876254 -48788099 - L2 LINE L2 -31 3241 3148 3074 171 25 73 chr1 193876890 193877616 -48786737 + LTR8 LTR ERV1 1 691 0 1502 272 97 15 chr1 193878096 193878640 -48785713 + MLT1G1 LTR MaLR 5 593 -2 278 184 0 92 chr1 193878850 193878926 -48785427 + L2 LINE L2 3244 3312 -1 3928 81 20 0 chr1 193879115 193879658 -48784695 + MER41A LTR ERV1 1 554 0 198 310 180 0 chr1 193879825 193879925 -48784428 - L2 LINE L2 -7 3265 3148 2256 89 10 32 chr1 193880053 193880366 -48783987 + AluSx SINE Alu 1 306 -6 1905 155 7 3 chr1 193881407 193881714 -48782639 - AluJb SINE Alu 0 308 1 268 203 203 49 chr1 193881894 193882017 -48782336 - MIR3 SINE MIR -28 180 39 * 407 302 101 7 chr1 193881982 193882131 -48782222 + MIR SINE MIR 97 259 -3 2193 124 3 0 chr1 193882148 193882447 -48781906 - AluSx SINE Alu -7 305 6 252 309 88 29 chr1 193882514 193882650 -48781703 + L2 LINE L2 3167 3310 -3 804 158 0 0 chr1 193882652 193882804 -48781549 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 321 298 89 32 chr1 193883715 193883839 -48780514 - MER94 DNA DNA -2 132 2 1885 139 46 7 chr1 193884396 193884677 -48779676 - AluSx SINE Alu -20 292 1 216 279 168 37 chr1 193885152 193885313 -48779040 - MIR SINE MIR -11 251 70 260 271 12 19 chr1 193886765 193886865 -48777488 + MIR SINE MIR 34 130 -78 2211 112 6 16 chr1 193887764 193888077 -48776276 - AluSx SINE Alu -2 310 1 731 124 0 103 chr1 193888082 193888227 -48776126 - FLAM_C SINE Alu -2 131 2 656 299 103 4 chr1 193888517 193888751 -48775602 - MIR SINE MIR 0 262 6 1746 141 20 37 chr1 193889737 193890035 -48774318 - AluSq SINE Alu -19 294 2 2114 118 7 0 chr1 193890889 193891178 -48773175 - AluSq SINE Alu -22 291 1 414 271 49 28 chr1 193891755 193891899 -48772454 - MIR SINE MIR -70 192 46 435 342 55 21 chr1 193892781 193892967 -48771386 + MIR SINE MIR 6 203 -59 2095 135 0 20 chr1 193892967 193893270 -48771083 + AluSx SINE Alu 1 297 -15 435 342 55 21 chr1 193893270 193893320 -48771033 + MIR SINE MIR 203 250 -12 686 238 82 17 chr1 193893418 193893649 -48770704 - MLT1L LTR MaLR -349 266 21 257 247 11 97 chr1 193894148 193894241 -48770112 - L2 LINE L2 -1 3271 3187 647 305 28 5 chr1 193894779 193894856 -48769497 - MIR SINE MIR -30 232 158 2345 106 0 0 chr1 193894856 193895157 -48769196 - AluSg SINE Alu -9 301 1 647 305 28 5 chr1 193895157 193895292 -48769061 - MIR SINE MIR -104 158 15 187 263 66 13 chr1 193895304 193895380 -48768973 + MER5A DNA MER1_type 8 87 -102 187 333 14 0 chr1 193895390 193895459 -48768894 - MER5A DNA MER1_type -69 120 51 2307 105 0 25 chr1 193895503 193895818 -48768535 - AluSx SINE Alu -5 307 1 226 321 18 9 chr1 193895865 193895974 -48768379 - L1ME3A LINE L1 -15 6155 6046 332 288 58 0 chr1 193896185 193896324 -48768029 - L1ME3A LINE L1 -218 5952 5806 201 339 0 0 chr1 193896374 193896433 -48767920 + L2 LINE L2 3210 3268 -4 1495 186 69 14 chr1 193897546 193897821 -48766532 - AluJo SINE Alu -19 293 4 438 301 49 30 chr1 193897836 193898039 -48766314 + MIR SINE MIR 10 216 -46 273 163 0 0 chr1 193898067 193898116 -48766237 + (CA)n Simple_repeat Simple_repeat 1 49 0 250 259 17 0 chr1 193899009 193899067 -48765286 + L2 LINE L2 3254 3312 -1 2100 92 123 3 chr1 193899301 193899626 -48764727 - THE1B LTR MaLR 0 364 1 187 269 148 19 chr1 193900123 193900231 -48764122 + MIR3 SINE MIR 8 129 -79 710 286 54 17 chr1 193901376 193901617 -48762736 - MIR SINE MIR 0 262 13 21 36 0 0 chr1 193901622 193901650 -48762703 + AT_rich Low_complexity Low_complexity 1 28 0 678 162 15 37 chr1 193901650 193901786 -48762567 - AluJb SINE Alu -178 134 2 345 325 17 0 chr1 193902875 193902992 -48761361 - L2 LINE L2 -3 3310 3192 208 231 0 0 chr1 193903005 193903044 -48761309 - MIR3 SINE MIR -20 188 150 1418 143 14 0 chr1 193903044 193903253 -48761100 - AluSg/x SINE Alu -6 304 93 323 299 52 0 chr1 193903253 193903350 -48761003 - MIR SINE MIR -59 149 48 267 243 14 14 chr1 193904867 193904941 -48759412 - MIR SINE MIR -85 123 50 522 271 42 15 chr1 193905070 193905245 -48759108 - MIR SINE MIR -20 188 1 520 228 87 0 chr1 193905310 193905437 -48758916 + MIR SINE MIR 7 144 -118 1878 141 37 13 chr1 193905506 193905804 -48758549 - AluSg SINE Alu -1 309 5 211 322 78 0 chr1 193905808 193905898 -48758455 + MIR SINE MIR 166 262 0 340 311 8 0 chr1 193906882 193907001 -48757352 + MIR SINE MIR 142 261 -1 514 261 26 26 chr1 193907753 193907906 -48756447 - MIR3 SINE MIR -33 175 23 1704 113 16 19 chr1 193909477 193909734 -48754619 + AluSq SINE Alu 37 292 -21 2170 78 10 20 chr1 193911230 193911525 -48752828 - AluSp SINE Alu -21 292 1 281 30 0 0 chr1 193911924 193911957 -48752396 + U2 snRNA snRNA 1 33 -155 462 227 45 6 chr1 193912123 193912276 -48752077 - MER5B DNA MER1_type -28 161 5 297 0 0 0 chr1 193912357 193912390 -48751963 + (CCCCG)n Simple_repeat Simple_repeat 4 36 0 547 241 35 0 chr1 193912443 193912588 -48751765 - L3 LINE CR1 -251 1326 1177 295 206 15 0 chr1 193912814 193912882 -48751471 - MIR SINE MIR -18 244 176 582 243 94 40 chr1 193912899 193913101 -48751252 - MIR SINE MIR -22 240 28 670 250 112 0 chr1 193913202 193913390 -48750963 - MIR SINE MIR -3 259 51 304 290 32 0 chr1 193913386 193913479 -48750874 + MIR3 SINE MIR 76 171 -37 * 499 201 201 38 chr1 193913480 193913639 -48750714 - MER5A DNA MER1_type -1 188 4 685 250 80 94 chr1 193914037 193914135 -48750218 + MLT1I LTR MaLR 63 161 -248 2426 98 0 9 chr1 193914135 193914451 -48749902 - AluSq SINE Alu 0 313 1 685 250 80 94 chr1 193914451 193914704 -48749649 + MLT1I LTR MaLR 161 409 0 239 329 12 0 chr1 193915444 193915526 -48748827 - MIR3 SINE MIR -4 204 122 377 230 142 9 chr1 193916690 193916803 -48747550 - MIR SINE MIR -61 147 20 958 133 139 0 chr1 193916811 193916977 -48747376 - MER5A DNA MER1_type 0 189 1 535 257 171 0 chr1 193916996 193917148 -48747205 + MER5A DNA MER1_type 12 189 0 21 0 0 0 chr1 193917525 193917546 -48746807 + AT_rich Low_complexity Low_complexity 1 21 0 1553 166 7 21 chr1 193917986 193918276 -48746077 - AluJo SINE Alu -6 306 21 1266 192 61 7 chr1 193918298 193918595 -48745758 - L1MC2 LINE L1 -9 6335 6023 1122 265 79 14 chr1 193918741 193918832 -48745521 - L2 LINE L2 0 3313 3229 2423 68 0 0 chr1 193918832 193919139 -48745214 + AluY SINE Alu 1 307 -4 1122 265 79 14 chr1 193919139 193919632 -48744721 - L2 LINE L2 -84 3229 2699 2177 99 0 3 chr1 193919741 193920043 -48744310 + AluSq SINE Alu 1 301 -12 2281 96 0 0 chr1 193920438 193920739 -48743614 + AluSg SINE Alu 5 305 -5 299 333 0 33 chr1 193921378 193921498 -48742855 + MIR SINE MIR 49 164 -98 2237 92 0 3 chr1 193921632 193921937 -48742416 + AluSp SINE Alu 9 312 -1 324 0 0 0 chr1 193922251 193922287 -48742066 + (TG)n Simple_repeat Simple_repeat 2 37 0 482 311 77 30 chr1 193922663 193922898 -48741455 - MIR SINE MIR -10 252 7 198 0 0 0 chr1 193924180 193924202 -48740151 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1741 139 7 56 chr1 193924206 193924508 -48739845 - AluSx SINE Alu -25 287 1 2466 176 51 16 chr1 193925341 193925829 -48738524 + MLT1D LTR MaLR 1 505 0 257 284 29 10 chr1 193926183 193926230 -48738123 + (CCCTAA)n Simple_repeat Simple_repeat 1 46 -58 2466 69 0 0 chr1 193926230 193926534 -48737819 - AluY SINE Alu -7 304 1 257 284 29 10 chr1 193926534 193926588 -48737765 + (CCCTAA)n Simple_repeat Simple_repeat 46 104 0 187 243 0 0 chr1 193926848 193926885 -48737468 + MIR SINE MIR 108 144 -118 832 156 0 7 chr1 193926983 193927118 -48737235 - AluJo SINE Alu -178 134 1 687 264 83 29 chr1 193927881 193928123 -48736230 + MIR SINE MIR 6 260 -2 528 296 23 0 chr1 193928123 193928299 -48736054 - MIR SINE MIR -63 199 20 1743 149 13 17 chr1 193928455 193928756 -48735597 + AluJb SINE Alu 1 300 -12 1503 236 83 22 chr1 193929201 193929646 -48734707 - MLT1D LTR MaLR -1 504 33 2218 99 16 0 chr1 193929651 193929954 -48734399 + AluSg SINE Alu 1 308 -2 321 315 58 41 chr1 193931113 193931309 -48733044 - MIR3 SINE MIR -27 235 45 2005 117 0 0 chr1 193931455 193931775 -48732578 + AluSx SINE Alu 1 320 0 432 210 58 65 chr1 193932542 193932680 -48731673 - MIR SINE MIR -70 192 56 257 308 56 0 chr1 193933383 193933490 -48730863 + MIR SINE MIR 36 148 -60 326 317 76 7 chr1 193933492 193933637 -48730716 + MIR SINE MIR 1 155 -107 1853 199 86 7 chr1 193933648 193934066 -48730287 - MER82 DNA MER2_type -13 640 190 1395 185 31 31 chr1 193934073 193934360 -48729993 - AluJb SINE Alu -14 298 12 793 193 5 89 chr1 193934366 193934419 -48729934 - MER82 DNA MER2_type -458 195 139 1885 116 14 18 chr1 193934419 193934737 -48729616 - AluSx SINE Alu 0 317 1 793 193 5 89 chr1 193934737 193934894 -48729459 - MER82 DNA MER2_type -514 139 1 379 283 75 0 chr1 193935186 193935306 -48729047 - MIR SINE MIR -65 197 69 2709 114 22 65 chr1 193935306 193935544 -48728809 - MSTA LTR MaLR 0 428 216 2043 137 0 0 chr1 193935544 193935837 -48728516 - AluSx SINE Alu -19 293 1 2709 114 22 65 chr1 193935837 193936045 -48728308 - MSTA LTR MaLR -212 216 1 1613 182 17 46 chr1 193936596 193936947 -48727406 - MLT1A1 LTR MaLR -2 363 23 2113 118 0 0 chr1 193936947 193937255 -48727098 + AluSq SINE Alu 1 308 0 1625 260 92 62 chr1 193937900 193938100 -48726253 - HAL1 LINE L1 0 2507 2314 2003 96 11 7 chr1 193938100 193938447 -48725906 + AluSx SINE Alu 3 350 0 1625 260 92 62 chr1 193938447 193939095 -48725258 - HAL1 LINE L1 -193 2314 1633 2082 103 3 34 chr1 193939095 193939416 -48724937 - AluSx SINE Alu 0 312 2 255 178 22 0 chr1 193939416 193939461 -48724892 + MER84 LTR ERVI 462 507 0 307 195 73 12 chr1 193939461 193939543 -48724810 + L1MB7 LINE L1 5756 5842 -336 2983 130 52 36 chr1 193939544 193939958 -48724395 + LTR49 LTR ERV1 1 428 -167 1884 136 3 14 chr1 193939958 193940253 -48724100 + AluSx SINE Alu 11 302 -10 2983 130 52 36 chr1 193940253 193940414 -48723939 + LTR49 LTR ERV1 428 585 -10 417 185 0 92 chr1 193940416 193940482 -48723871 + L1MB7 LINE L1 5871 5923 -261 1710 138 0 55 chr1 193940482 193940807 -48723546 + AluJb SINE Alu 1 307 -5 417 185 0 92 chr1 193940807 193940859 -48723494 + L1MB7 LINE L1 5923 5978 -206 1509 209 89 96 chr1 193940859 193941299 -48723054 - LTR8 LTR ERV1 0 691 291 2220 73 7 3 chr1 193941310 193941596 -48722757 - AluY SINE Alu -24 287 1 1603 175 26 13 chr1 193941600 193941977 -48722376 - L1MEc LINE L1 -4183 2213 1832 923 158 0 0 chr1 193941979 193942137 -48722216 - AluSg/x SINE Alu -1 309 152 1746 136 6 66 chr1 193942247 193942579 -48721774 + AluSq SINE Alu 1 312 -1 284 315 143 30 chr1 193942926 193943129 -48721224 - L2 LINE L2 -2 3270 3045 2183 201 126 30 chr1 193943161 193943479 -48720874 - MLT1E LTR MaLR -2 591 305 2126 106 0 17 chr1 193943479 193943780 -48720573 + AluSg SINE Alu 1 296 -14 2183 201 126 30 chr1 193943780 193943999 -48720354 - MLT1E LTR MaLR -288 305 2 198 242 30 101 chr1 193946210 193946309 -48718044 - MIR SINE MIR -46 216 125 297 295 101 7 chr1 193947420 193947569 -48716784 - MIR SINE MIR -6 256 94 429 235 46 7 chr1 193947735 193947888 -48716465 + L1ME4a LINE L1 5959 6117 -4 352 160 0 13 chr1 193947900 193948090 -48716263 + AluJo SINE Alu 2 236 -66 2094 126 3 0 chr1 193948100 193948393 -48715960 - AluSx SINE Alu -18 294 1 716 59 0 0 chr1 193948407 193948516 -48715837 - AluSc SINE Alu 0 302 194 367 260 84 17 chr1 193949128 193949316 -48715037 - MIR SINE MIR -50 212 15 2394 109 9 15 chr1 193949852 193950191 -48714162 + MER1B DNA MER1_type 1 337 0 212 247 101 108 chr1 193951676 193951780 -48712573 + MIR3 SINE MIR 48 152 -56 688 181 219 7 chr1 193951780 193951935 -48712418 + MER5A DNA MER1_type 1 188 -1 212 247 101 108 chr1 193951935 193951988 -48712365 + MIR3 SINE MIR 152 204 -4 2373 91 0 0 chr1 193953787 193954095 -48710258 - AluSg SINE Alu -2 308 1 842 261 76 0 chr1 193955267 193955505 -48708848 - MIR SINE MIR 0 262 7 428 301 113 10 chr1 193955503 193955706 -48708647 - MIR SINE MIR -2 260 37 * 302 235 148 0 chr1 193956626 193956707 -48707646 - MIR SINE MIR -87 121 29 464 207 233 145 chr1 193957499 193957573 -48706780 - Charlie1a DNA MER1_type -2119 642 576 1999 132 7 0 chr1 193957573 193957868 -48706485 + AluSx SINE Alu 1 297 -15 464 207 233 145 chr1 193957868 193957922 -48706431 - Charlie1a DNA MER1_type -2185 576 528 1678 188 0 22 chr1 193957922 193958241 -48706112 - AluJb SINE Alu 0 312 1 464 207 233 145 chr1 193958241 193958291 -48706062 - Charlie1a DNA MER1_type -2233 528 484 1950 159 3 0 chr1 193958291 193958593 -48705760 - AluJb SINE Alu -7 305 3 464 207 233 145 chr1 193958593 193958640 -48705713 - Charlie1a DNA MER1_type -2277 484 443 2189 104 3 0 chr1 193958640 193958937 -48705416 + AluSp SINE Alu 1 298 -15 464 207 233 145 chr1 193958937 193959205 -48705148 - Charlie1a DNA MER1_type -2318 443 102 401 351 84 25 chr1 193960392 193960677 -48703676 - L2 LINE L2 0 3272 2971 854 202 73 11 chr1 193962155 193962333 -48702020 + MER5A DNA MER1_type 1 189 0 693 164 22 37 chr1 194163462 194163596 -48500757 + FLAM_C SINE Alu 2 133 0 301 111 56 0 chr1 194164318 194164390 -48499963 - L1ME4a LINE L1 -34 6087 6012 201 197 14 99 chr1 194164615 194164686 -48499667 - MER5A DNA MER1_type -114 75 11 316 328 107 33 chr1 194165430 194165779 -48498574 - L2 LINE L2 -8 3264 2865 405 0 0 0 chr1 194165779 194165824 -48498529 + (TG)n Simple_repeat Simple_repeat 1 45 0 316 328 107 33 chr1 194165824 194166052 -48498301 - L2 LINE L2 -407 2865 2655 198 0 0 0 chr1 194172433 194172455 -48491898 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 9413 24 1 196 chr1 194172456 194174106 -48490247 - SVA Other Other -10 1376 50 192 40 0 0 chr1 194174106 194174131 -48490222 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 333 269 8 82 chr1 194174980 194175114 -48489239 + MIR3 SINE MIR 58 181 -27 31 58 0 0 chr1 194175674 194175726 -48488627 + GC_rich Low_complexity Low_complexity 1 52 0 377 232 139 62 chr1 194178141 194178335 -48486018 + MIR SINE MIR 54 262 0 445 260 0 0 chr1 194179251 194179351 -48485002 - U13 snRNA snRNA -4 100 1 231 125 0 0 chr1 194179743 194179783 -48484570 + (TG)n Simple_repeat Simple_repeat 2 41 0 755 270 37 0 chr1 194179893 194180082 -48484271 + MIR SINE MIR 67 262 0 252 0 0 0 chr1 194180288 194180316 -48484037 + (T)n Simple_repeat Simple_repeat 1 28 0 262 284 0 53 chr1 194180598 194180693 -48483660 + MIR SINE MIR 40 129 -79 580 315 71 5 chr1 194181344 194181541 -48482812 + MIR SINE MIR 51 260 -2 647 299 62 6 chr1 194182982 194183222 -48481131 - MIR SINE MIR 0 262 7 210 143 0 0 chr1 194183913 194183948 -48480405 + (CA)n Simple_repeat Simple_repeat 2 36 0 323 269 238 39 chr1 194184068 194184288 -48480065 + MIR3 SINE MIR 1 261 -1 255 103 0 0 chr1 194185158 194185197 -48479156 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 284 198 0 10 chr1 194185829 194185925 -48478428 + (CA)n Simple_repeat Simple_repeat 1 95 0 542 203 13 7 chr1 194185958 194186419 -48477934 + (CA)n Simple_repeat Simple_repeat 1 464 0 242 214 29 0 chr1 194186455 194186595 -48477758 + (CA)n Simple_repeat Simple_repeat 2 145 0 810 209 5 47 chr1 194187123 194187314 -48477039 - AluYb8 SINE Alu -134 184 2 693 164 22 37 chr1 194187849 194187983 -48476370 + FLAM_C SINE Alu 2 133 0 545 132 38 0 chr1 194188697 194188803 -48475550 - L1ME4a LINE L1 -31 6090 5981 4919 163 23 67 chr1 194188952 194189301 -48475052 - L1MB7 LINE L1 -19 6165 5802 2328 93 3 0 chr1 194189301 194189612 -48474741 - AluSx SINE Alu 0 312 1 4919 163 23 67 chr1 194189612 194191302 -48473051 - L1MB7 LINE L1 -382 5802 4232 1888 327 88 48 chr1 194191383 194192626 -48471727 - L1 LINE L1 -1498 4648 3356 814 262 14 39 chr1 194192760 194193039 -48471314 - L1MEc LINE L1 -6013 383 112 1886 141 34 0 chr1 194193108 194193406 -48470947 - AluSx SINE Alu -2 310 3 1812 126 50 0 chr1 194193410 194193687 -48470666 - AluSg SINE Alu -19 291 1 528 273 27 53 chr1 194193690 194194064 -48470289 - HAL1b LINE L1 -674 674 311 198 0 0 0 chr1 194194148 194194170 -48470183 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7637 37 0 0 chr1 194194170 194195102 -48469251 - L1PA3 LINE L1 -18 6137 5206 6116 31 5 3 chr1 194195202 194196579 -48467774 - L1PA3 LINE L1 -151 6004 4625 325 326 45 22 chr1 194196594 194196772 -48467581 - HAL1 LINE L1 -1231 1276 1095 414 0 0 0 chr1 194196904 194196950 -48467403 + (TTTTA)n Simple_repeat Simple_repeat 5 50 0 2101 110 0 3 chr1 194197093 194197392 -48466961 - AluSx SINE Alu -14 298 1 231 152 0 0 chr1 194197984 194198030 -48466323 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 293 287 104 9 chr1 194199570 194199685 -48464668 + MIR SINE MIR 20 145 -117 22 0 0 0 chr1 194200072 194200094 -48464259 + AT_rich Low_complexity Low_complexity 1 22 0 210 348 34 17 chr1 194200269 194200387 -48463966 - MIR3 SINE MIR -4 204 85 211 385 83 18 chr1 194200890 194200999 -48463354 + L2 LINE L2 3116 3231 -41 413 141 0 0 chr1 194201043 194201107 -48463246 - Charlie5 DNA MER1_type -2515 97 34 411 302 50 22 chr1 194201518 194201697 -48462656 + MIR SINE MIR 78 261 -1 234 306 65 9 chr1 194201723 194201831 -48462522 + L2 LINE L2 3151 3264 -8 466 212 35 44 chr1 194202774 194202872 -48461481 + MER45 DNA AcHobo 1 99 -941 1858 149 3 3 chr1 194202872 194203174 -48461179 - AluJo SINE Alu -10 302 1 466 212 35 44 chr1 194203174 194203188 -48461165 + MER45 DNA AcHobo 99 112 -928 2274 97 3 0 chr1 194204198 194204509 -48459844 - AluSp SINE Alu 0 313 2 380 242 212 8 chr1 194204509 194204641 -48459712 + MIR3 SINE MIR 43 201 -7 2290 90 3 6 chr1 194205493 194205804 -48458549 + AluSq SINE Alu 1 310 -3 308 106 121 0 chr1 194206070 194206136 -48458217 + MER53 DNA DNA 94 167 -22 386 208 59 0 chr1 194206136 194206237 -48458116 - MER53 DNA DNA -78 111 5 505 286 164 35 chr1 194206980 194207211 -48457142 + MIR SINE MIR 2 262 0 2340 76 7 0 chr1 194207420 194207724 -48456629 - AluSp SINE Alu -7 306 1 213 306 69 0 chr1 194208232 194208304 -48456049 - L2 LINE L2 -3 3269 3193 600 171 140 67 chr1 194208518 194208682 -48455671 - MER5A DNA MER1_type 0 189 14 656 135 0 0 chr1 194209987 194210083 -48454270 + AluSg/x SINE Alu 208 303 -9 218 261 97 60 chr1 194210570 194210704 -48453649 + MIR SINE MIR 73 211 -51 412 311 164 23 chr1 194211639 194212329 -48452024 - L2 LINE L2 -86 3227 2447 777 235 92 19 chr1 194213348 194213717 -48450636 - HAL1b LINE L1 -785 563 69 283 276 95 0 chr1 194214144 194214249 -48450104 + L2 LINE L2 2950 3064 -208 200 262 28 117 chr1 194215083 194215228 -48449125 + L3b LINE CR1 1137 1268 -315 318 315 0 0 chr1 194216227 194216319 -48448034 - MIR3 SINE MIR -52 156 65 549 278 53 21 chr1 194216908 194217095 -48447258 + MIR SINE MIR 24 216 -46 426 237 9 9 chr1 194217825 194217939 -48446414 + MIR SINE MIR 31 144 -118 442 246 136 45 chr1 194219372 194219571 -48444782 + MIR SINE MIR 40 256 -6 1751 189 59 46 chr1 194219725 194220181 -48444172 - MLT1C LTR MaLR 0 467 6 415 193 91 8 chr1 194220418 194220539 -48443814 - MIR SINE MIR -62 146 38 385 270 8 32 chr1 194221151 194221277 -48443076 - L2 LINE L2 0 3313 3191 2622 254 133 12 chr1 194221336 194222431 -48441922 + L2 LINE L2 2095 3309 -4 334 274 38 19 chr1 194222439 194222545 -48441808 + MIR3 SINE MIR 76 183 -25 195 224 0 20 chr1 194222559 194222608 -48441745 + L2 LINE L2 2230 2277 -1037 424 343 185 18 chr1 194222937 194223386 -48440967 + L3 LINE CR1 1052 1575 -2 382 245 161 29 chr1 194224438 194224558 -48439795 + MIR3 SINE MIR 3 158 -50 2381 93 30 0 chr1 194224558 194224860 -48439493 + AluSp SINE Alu 1 311 -2 382 245 161 29 chr1 194224860 194224912 -48439441 + MIR3 SINE MIR 158 202 -6 859 234 19 5 chr1 194225614 194225823 -48438530 + MIR SINE MIR 30 241 -21 295 292 53 47 chr1 194226074 194226245 -48438108 - L2 LINE L2 -466 2848 2677 278 292 0 0 chr1 194226241 194226306 -48438047 + MIR SINE MIR 9 73 -189 * 404 239 106 39 chr1 194226309 194226598 -48437755 - MLT1J2 LTR MaLR -3 443 136 945 192 56 0 chr1 194226671 194226869 -48437484 + MER3 DNA MER1_type 1 209 0 689 229 43 32 chr1 194226911 194227099 -48437254 + MIR SINE MIR 63 252 -10 443 236 194 0 chr1 194228128 194228293 -48436060 - L2 LINE L2 0 3313 3117 966 247 178 32 chr1 194228313 194228786 -48435567 - MLT1H1 LTR MaLR -13 542 1 648 237 45 0 chr1 194228807 194228963 -48435390 - L2 LINE L2 -230 3083 2921 2473 89 0 0 chr1 194229013 194229317 -48435036 + AluSx SINE Alu 1 304 -8 405 0 0 0 chr1 194229838 194229883 -48434470 + (TG)n Simple_repeat Simple_repeat 1 45 0 372 296 103 0 chr1 194230717 194230910 -48433443 - L1ME LINE L1 -453 5668 5457 246 154 0 77 chr1 194230908 194230986 -48433367 - L1ME4a LINE L1 -4 6117 6046 * 2433 71 0 3 chr1 194232494 194232788 -48431565 - AluSc SINE Alu -16 293 1 2225 139 0 0 chr1 194232945 194233247 -48431106 + AluSx SINE Alu 1 302 -10 2029 143 13 19 chr1 194234338 194234652 -48429701 + AluJb SINE Alu 1 312 0 2391 89 0 7 chr1 194235701 194236004 -48428349 + AluSq SINE Alu 1 301 -12 692 93 0 47 chr1 194236004 194236111 -48428242 + AluSc SINE Alu 132 233 -76 272 279 70 0 chr1 194236207 194236293 -48428060 - MIR SINE MIR -56 206 115 2505 85 0 0 chr1 194236507 194236813 -48427540 - AluSx SINE Alu -6 306 1 214 309 64 36 chr1 194237651 194237761 -48426592 + L2 LINE L2 3200 3312 -1 400 303 0 0 chr1 194238739 194238848 -48425505 + MIR SINE MIR 39 147 -115 683 266 11 6 chr1 194239091 194239268 -48425085 + MIR3 SINE MIR 14 191 -17 320 184 35 123 chr1 194241870 194241900 -48422453 - MIR3 SINE MIR -18 190 159 341 284 148 12 chr1 194241900 194242069 -48422284 + MER91A DNA MER1_type 5 196 0 320 184 35 123 chr1 194242069 194242152 -48422201 - MIR3 SINE MIR -49 159 87 328 245 110 19 chr1 194242249 194242397 -48421956 - MIR SINE MIR -67 141 17 204 200 100 0 chr1 194242751 194242801 -48421552 + L2 LINE L2 3257 3311 -2 351 291 6 76 chr1 194245239 194245345 -48419008 + MIR SINE MIR 48 139 -123 2279 119 0 6 chr1 194245345 194245656 -48418697 + AluSx SINE Alu 1 309 -3 351 291 6 76 chr1 194245656 194245721 -48418632 + MIR SINE MIR 139 207 -55 2511 58 3 0 chr1 194246914 194247209 -48417144 + AluY SINE Alu 1 296 -15 251 318 15 0 chr1 194247223 194247289 -48417064 - L3 LINE CR1 -16 1561 1495 549 309 126 17 chr1 194247414 194247644 -48416709 + MIR SINE MIR 8 262 0 716 188 12 12 chr1 194247669 194247839 -48416514 - L1MA4 LINE L1 -1 6299 6130 911 299 14 76 chr1 194248013 194248435 -48415918 - L3 LINE CR1 -155 1422 1027 327 308 168 29 chr1 194249213 194249421 -48414932 - L3b LINE CR1 -6 1577 1341 285 252 140 46 chr1 194249956 194250096 -48414257 + L1ME4a LINE L1 5762 5887 -234 1671 166 86 77 chr1 194250096 194250524 -48413829 - MSTB1 LTR MaLR 0 432 1 285 252 140 46 chr1 194250524 194250712 -48413641 + L1ME4a LINE L1 5887 6121 0 2108 140 0 19 chr1 194251299 194251613 -48412740 - AluSx SINE Alu -4 308 1 180 308 58 0 chr1 194251765 194251817 -48412536 + L2 LINE L2 3136 3190 -82 224 229 21 0 chr1 194253179 194253227 -48411126 + CT-rich Low_complexity Low_complexity 4 52 0 434 244 67 7 chr1 194253638 194253773 -48410580 - MER103 DNA DNA -12 154 12 205 296 0 0 chr1 194256251 194256339 -48408014 + T-rich Low_complexity Low_complexity 1 88 0 2558 63 0 19 chr1 194256848 194257164 -48407189 + AluY SINE Alu 1 310 -1 1011 261 110 18 chr1 194257999 194258443 -48405910 - L1MC4a LINE L1 -1712 6096 5612 299 333 0 44 chr1 194258966 194259080 -48405273 + L2 LINE L2 3200 3308 -5 1888 130 60 17 chr1 194259097 194259396 -48404957 + AluJb SINE Alu 1 312 0 1894 62 8 12 chr1 194259497 194259767 -48404586 - AluY SINE Alu 0 325 57 937 274 67 6 chr1 194259953 194260418 -48403935 + MLT1K LTR MaLR 29 580 -8 1706 197 0 3 chr1 194260532 194260816 -48403537 - AluJb SINE Alu -29 283 1 324 331 87 0 chr1 194261071 194261198 -48403155 - MIR3 SINE MIR 0 208 71 2446 103 0 0 chr1 194261224 194261536 -48402817 + AluSq SINE Alu 1 312 -1 506 242 85 13 chr1 194261556 194261709 -48402644 + MIR SINE MIR 29 192 -70 2360 110 0 0 chr1 194261720 194262011 -48402342 + AluSx SINE Alu 1 291 -21 580 297 48 24 chr1 194263074 194263283 -48401070 - MIR SINE MIR -33 229 16 792 294 114 38 chr1 194263476 194264066 -48400287 - L2 LINE L2 -123 3190 2546 478 303 144 16 chr1 194264184 194264549 -48399804 + MLT1L LTR MaLR 170 615 0 371 261 11 11 chr1 194265221 194265309 -48399044 + L2 LINE L2 3184 3271 -1 21 0 0 0 chr1 194265714 194265735 -48398618 + AT_rich Low_complexity Low_complexity 1 21 0 2820 0 0 0 chr1 194266593 194266902 -48397451 + AluYa5 SINE Alu 1 309 -2 1280 102 6 0 chr1 194266902 194267079 -48397274 + AluSg/x SINE Alu 132 309 -1 2199 88 0 7 chr1 194267094 194267391 -48396962 + AluSg SINE Alu 1 295 -15 459 330 80 5 chr1 194267399 194267611 -48396742 - MIR SINE MIR -7 255 28 195 268 0 0 chr1 194267773 194267814 -48396539 + L2 LINE L2 3211 3251 -21 195 342 58 21 chr1 194268335 194268525 -48395828 - L2 LINE L2 -219 3053 2857 194 109 16 78 chr1 194268791 194268855 -48395498 + (TCTCCC)n Simple_repeat Simple_repeat 6 65 0 423 278 30 15 chr1 194269779 194269912 -48394441 + MIR SINE MIR 20 154 -108 1605 296 117 41 chr1 194269912 194269995 -48394358 - L2 LINE L2 -12 3260 3185 2038 131 7 0 chr1 194269995 194270333 -48394020 + AluSx SINE Alu 3 312 0 1605 296 117 41 chr1 194270333 194271487 -48392866 - L2 LINE L2 -87 3185 1932 542 303 43 21 chr1 194272331 194272519 -48391834 + MIR3 SINE MIR 15 206 -2 625 303 16 16 chr1 194273490 194273678 -48390675 - MER5A DNA MER1_type 0 189 2 397 254 85 8 chr1 194273776 194273906 -48390447 + MIR SINE MIR 118 257 -5 576 177 17 0 chr1 194274227 194274402 -48389951 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 239 217 0 43 chr1 194274404 194274473 -48389880 + GA-rich Low_complexity Low_complexity 3 68 0 812 164 20 0 chr1 194274477 194274790 -48389563 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 779 156 6 0 chr1 194275587 194275766 -48388587 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1171 235 91 41 chr1 194276887 194277322 -48387031 + MLT1C LTR MaLR 1 466 -1 385 164 0 0 chr1 194277342 194277403 -48386950 - MER5A DNA MER1_type 0 189 129 2080 98 0 7 chr1 194277408 194277727 -48386626 + AluSg SINE Alu 1 310 0 256 281 115 57 chr1 194278020 194278212 -48386141 + MIR SINE MIR 58 260 -2 653 250 164 39 chr1 194278557 194278789 -48385564 + MIR SINE MIR 2 262 0 489 270 49 1 chr1 194279184 194279323 -48385030 - MIR3 SINE MIR -45 163 19 754 254 63 5 chr1 194279333 194279538 -48384815 + MIR SINE MIR 5 221 -41 311 309 91 12 chr1 194280578 194280743 -48383610 + MIR SINE MIR 31 208 -54 2164 113 0 3 chr1 194281272 194281572 -48382781 - AluSx SINE Alu -13 299 1 602 265 45 65 chr1 194281736 194281936 -48382417 - MIR SINE MIR -38 224 29 417 294 84 55 chr1 194281918 194282271 -48382082 + L2 LINE L2 2496 2837 -435 * 451 0 34 0 chr1 194282271 194282330 -48382023 + (CA)n Simple_repeat Simple_repeat 2 62 0 417 294 84 55 chr1 194282330 194282384 -48381969 + L2 LINE L2 2837 2888 -384 2015 129 60 72 chr1 194282384 194282787 -48381566 + MER48 LTR ERV1 1 398 0 417 294 84 55 chr1 194282787 194282915 -48381438 + L2 LINE L2 2888 3042 -230 2227 84 3 13 chr1 194282940 194283249 -48381104 + AluSg SINE Alu 1 306 -4 1672 162 6 37 chr1 194283254 194283575 -48380778 + AluJb SINE Alu 1 311 -1 472 254 103 24 chr1 194283692 194283857 -48380496 - MIR SINE MIR -65 197 20 189 313 0 30 chr1 194284969 194285036 -48379317 - L2 LINE L2 -9 3304 3240 425 282 260 6 chr1 194286918 194287099 -48377254 - MIR SINE MIR -31 231 5 660 324 25 33 chr1 194287663 194287907 -48376446 + MIR SINE MIR 5 246 -16 372 302 50 36 chr1 194287944 194288083 -48376270 + MIR3 SINE MIR 55 195 -13 292 265 164 48 chr1 194288422 194288611 -48375742 - L3 LINE CR1 -13 1564 1354 490 278 16 16 chr1 194288748 194288874 -48375479 - MIR SINE MIR -60 148 23 230 274 0 0 chr1 194288940 194288991 -48375362 + MER5B DNA MER1_type 1 51 -127 800 177 0 0 chr1 194288994 194289118 -48375235 - FLAM_C SINE Alu -18 125 2 484 218 8 68 chr1 194289120 194289253 -48375100 + MER5B DNA MER1_type 37 161 -17 2082 95 3 30 chr1 194289545 194289850 -48374503 - AluSq SINE Alu -16 297 1 464 202 11 0 chr1 194289904 194289993 -48374360 - U13 snRNA snRNA -9 95 6 234 288 62 12 chr1 194290011 194290091 -48374262 - MIR3 SINE MIR -22 186 103 237 300 21 29 chr1 194292286 194292426 -48371927 + GA-rich Low_complexity Low_complexity 1 139 0 561 279 139 0 chr1 194292562 194292734 -48371619 - MER91A DNA MER1_type 0 196 1 570 266 113 10 chr1 194293826 194294029 -48370324 - MIR SINE MIR -2 260 37 22 0 0 0 chr1 194295254 194295276 -48369077 + AT_rich Low_complexity Low_complexity 1 22 0 260 0 0 0 chr1 194295284 194295315 -48369038 - U7 snRNA snRNA -31 32 2 201 328 72 26 chr1 194295706 194295901 -48368452 - L2 LINE L2 -661 2653 2450 310 162 30 101 chr1 194296576 194296675 -48367678 - MIR3 SINE MIR -6 202 111 1839 115 67 45 chr1 194296843 194297173 -48367180 + MER1B DNA MER1_type 1 337 0 352 291 61 14 chr1 194297370 194297518 -48366835 - MIR SINE MIR 0 262 108 * 425 274 89 32 chr1 194297515 194297705 -48366648 + MIR SINE MIR 20 220 -42 1975 118 7 0 chr1 194298548 194298837 -48365516 - AluSq SINE Alu -22 291 1 495 225 132 0 chr1 194300655 194300755 -48363598 - L1MA9 LINE L1 -40 6272 6150 345 93 0 0 chr1 194300755 194300809 -48363544 + (TG)n Simple_repeat Simple_repeat 2 55 0 495 225 132 0 chr1 194300809 194300837 -48363516 - L1MA9 LINE L1 -162 6150 6127 494 246 68 63 chr1 194301027 194301139 -48363214 + MIR SINE MIR 71 181 -81 2114 112 0 3 chr1 194301139 194301433 -48362920 + AluSx SINE Alu 1 293 -19 494 246 68 63 chr1 194301433 194301478 -48362875 + MIR SINE MIR 181 233 -29 1970 105 7 14 chr1 194301478 194301796 -48362557 + AluSq SINE Alu 1 316 0 494 246 68 63 chr1 194301796 194301827 -48362526 + MIR SINE MIR 233 262 0 303 270 90 9 chr1 194301880 194301991 -48362362 + L2 LINE L2 3153 3272 0 404 294 41 0 chr1 194303006 194303143 -48361210 - MER20B DNA MER1_type -17 202 57 1021 220 5 18 chr1 194303146 194303369 -48360984 + AluJo SINE Alu 87 306 -6 338 344 53 8 chr1 194303423 194303554 -48360799 - MIR3 SINE MIR -58 150 14 1138 169 51 0 chr1 194305052 194305247 -48359106 - MER3 DNA MER1_type 0 209 5 436 241 12 16 chr1 194305247 194305413 -48358940 + MIR SINE MIR 20 252 -10 387 296 93 35 chr1 194305519 194305691 -48358662 - L2 LINE L2 0 3272 3091 300 111 0 0 chr1 194306621 194306666 -48357687 + (CA)n Simple_repeat Simple_repeat 1 45 0 291 246 100 27 chr1 194306997 194307107 -48357246 - MIR SINE MIR -109 153 36 216 200 29 43 chr1 194307177 194307247 -48357106 + (CCCG)n Simple_repeat Simple_repeat 2 70 0 248 191 0 0 chr1 194307719 194307766 -48356587 - L3b LINE CR1 -198 1385 1339 639 220 54 18 chr1 194307812 194307980 -48356373 + MIR SINE MIR 29 202 -60 214 308 168 28 chr1 194308594 194308737 -48355616 - L2 LINE L2 -94 3178 3016 1373 224 120 51 chr1 194308836 194309269 -48355084 + MLT1C LTR MaLR 1 463 -4 1845 256 46 17 chr1 194309449 194309981 -48354372 + L1ME3A LINE L1 5606 6153 -17 2118 97 3 27 chr1 194310002 194310302 -48354051 + AluSx SINE Alu 1 293 -19 289 241 13 25 chr1 194310423 194310502 -48353851 + L2 LINE L2 3222 3299 -14 225 94 0 0 chr1 194311263 194311295 -48353058 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 427 326 50 39 chr1 194311298 194311556 -48352797 - L2 LINE L2 -1 3271 3011 444 217 0 47 chr1 194311853 194311959 -48352394 - MER5A DNA MER1_type -80 109 9 267 365 22 7 chr1 194312117 194312254 -48352099 + MER91A DNA MER1_type 56 194 -2 181 139 47 0 chr1 194313238 194313281 -48351072 + CT-rich Low_complexity Low_complexity 1 45 0 273 303 30 10 chr1 194313352 194313451 -48350902 - MIR SINE MIR -78 130 30 233 269 29 77 chr1 194313714 194313818 -48350535 + L2 LINE L2 3214 3312 -1 967 254 121 0 chr1 194313819 194314051 -48350302 - MIR SINE MIR 0 262 3 2159 85 4 0 chr1 194314446 194314773 -48349580 + AluSx SINE Alu 1 328 0 390 136 0 0 chr1 194314773 194314839 -48349514 - MER45A DNA AcHobo -13 165 100 1158 169 4 87 chr1 194314861 194315115 -48349238 + AluJb SINE Alu 70 302 -10 254 231 256 0 chr1 194315133 194315211 -48349142 - MER45A DNA AcHobo -71 107 10 332 144 29 10 chr1 194315673 194315777 -48348576 + (TG)n Simple_repeat Simple_repeat 2 107 0 400 235 24 2 chr1 194315874 194316311 -48348042 + (TG)n Simple_repeat Simple_repeat 1 446 0 194 210 32 0 chr1 194316329 194316453 -48347900 + (TG)n Simple_repeat Simple_repeat 2 129 0 289 204 29 21 chr1 194316492 194316775 -48347578 + (TG)n Simple_repeat Simple_repeat 1 285 0 453 213 8 71 chr1 194316863 194317252 -48347101 + (TG)n Simple_repeat Simple_repeat 1 364 0 252 0 0 0 chr1 194317856 194317884 -48346469 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1859 52 9 13 chr1 194317894 194318126 -48346227 - AluY SINE Alu -24 287 57 980 251 74 10 chr1 194318312 194318756 -48345597 + MLT1K LTR MaLR 29 559 -29 1666 197 0 3 chr1 194318891 194319175 -48345178 - AluJb SINE Alu -29 283 1 286 331 87 0 chr1 194319430 194319557 -48344796 - MIR3 SINE MIR 0 208 71 2413 98 0 0 chr1 194319583 194319890 -48344463 + AluSq SINE Alu 1 307 -6 495 235 87 13 chr1 194319915 194320064 -48344289 + MIR SINE MIR 29 188 -74 2337 110 0 0 chr1 194320079 194320370 -48343983 + AluSx SINE Alu 1 291 -21 523 297 48 24 chr1 194321433 194321642 -48342711 - MIR SINE MIR -33 229 16 746 291 97 35 chr1 194321835 194322425 -48341928 - L2 LINE L2 -123 3190 2546 495 290 181 33 chr1 194322543 194322908 -48341445 + MLT1L LTR MaLR 170 615 0 371 261 11 11 chr1 194323580 194323668 -48340685 + L2 LINE L2 3184 3271 -1 21 0 0 0 chr1 194324073 194324094 -48340259 + AT_rich Low_complexity Low_complexity 1 21 0 2498 51 3 3 chr1 194324952 194325263 -48339090 + AluYa5 SINE Alu 1 311 0 344 267 77 36 chr1 194326107 194326371 -48337982 - L1MC5 LINE L1 -182 7860 7514 1780 110 26 11 chr1 194326597 194326870 -48337483 + L1PA13 LINE L1 5886 6162 -1 1302 136 47 0 chr1 194326891 194327105 -48337248 + L1MB3 LINE L1 5959 6182 -1 311 335 158 0 chr1 194327107 194327259 -48337094 - MIR3 SINE MIR -30 178 3 2123 133 0 0 chr1 194328244 194328537 -48335816 - AluSx SINE Alu -19 293 1 1103 159 0 0 chr1 194328537 194328707 -48335646 - AluJb SINE Alu -2 310 141 257 261 126 18 chr1 194328875 194328986 -48335367 + L2 LINE L2 3180 3302 -11 2368 73 0 0 chr1 194329277 194329566 -48334787 - AluSg1 SINE Alu -20 289 1 1020 276 111 62 chr1 194329581 194330060 -48334293 - L1M4 LINE L1 -908 5238 4784 554 101 0 0 chr1 194330060 194330139 -48334214 - L1MA9 LINE L1 0 6312 6234 1020 276 111 62 chr1 194330139 194330545 -48333808 - L1M4 LINE L1 -1362 4784 4287 2097 136 0 3 chr1 194330545 194330846 -48333507 - AluSp SINE Alu -13 300 1 1020 276 111 62 chr1 194330846 194331048 -48333305 - L1M4 LINE L1 -1859 4287 4096 1007 155 0 59 chr1 194331052 194331239 -48333114 + AluJb SINE Alu 137 312 0 504 256 131 31 chr1 194331288 194331737 -48332616 - L1M4 LINE L1 -2413 3733 3240 491 122 0 0 chr1 194331873 194331947 -48332406 + AluS SINE Alu 229 302 -8 711 108 50 8 chr1 194331959 194332079 -48332274 - MER2 DNA MER2_type -99 246 122 781 147 8 8 chr1 194332082 194332211 -48332142 + FLAM_C SINE Alu 1 129 -4 2048 127 0 0 chr1 194332252 194332555 -48331798 + AluSx SINE Alu 1 303 0 2294 121 0 0 chr1 194332556 194332863 -48331490 + AluSx SINE Alu 1 307 -5 821 161 15 0 chr1 194332899 194333036 -48331317 - MER2 DNA MER2_type -206 139 1 2943 3 0 0 chr1 194333621 194333931 -48330422 + AluYa5 SINE Alu 1 310 -1 875 283 116 22 chr1 194334517 194334878 -48329475 + L3 LINE CR1 1142 1536 -41 2600 69 0 0 chr1 194334878 194335183 -48329170 - AluSx SINE Alu -7 305 1 237 78 20 39 chr1 194335486 194335537 -48328816 + (TTA)n Simple_repeat Simple_repeat 2 51 0 337 290 11 11 chr1 194336153 194336246 -48328107 + GA-rich Low_complexity Low_complexity 4 96 0 24 67 0 0 chr1 194336382 194336427 -48327926 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr1 194336474 194336509 -48327844 + AT_rich Low_complexity Low_complexity 1 35 0 233 98 0 0 chr1 194336569 194336610 -48327743 - AluSq SINE Alu 0 302 262 1146 69 0 0 chr1 194336610 194336754 -48327599 - AluSq SINE Alu -83 230 87 1829 161 37 3 chr1 194336782 194337081 -48327272 + AluJb SINE Alu 1 309 -3 22 35 0 0 chr1 194337269 194337298 -48327055 + AT_rich Low_complexity Low_complexity 1 29 0 2017 96 85 0 chr1 194337526 194337798 -48326555 + AluSg SINE Alu 1 295 -15 1395 173 132 0 chr1 194337829 194337950 -48326403 + AluJo SINE Alu 1 105 -207 198 0 0 0 chr1 194337950 194337972 -48326381 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1395 173 132 0 chr1 194337972 194338116 -48326237 + AluJo SINE Alu 105 301 -11 216 0 0 0 chr1 194338328 194338352 -48326001 + (TA)n Simple_repeat Simple_repeat 1 24 0 2176 119 20 0 chr1 194338588 194338881 -48325472 - AluSx SINE Alu -13 299 1 1981 145 0 0 chr1 194339441 194339749 -48324604 + AluJb SINE Alu 1 308 0 1926 141 10 3 chr1 194339878 194340177 -48324176 + AluJb SINE Alu 1 301 -11 473 257 90 7 chr1 194340264 194340408 -48323945 - MIR SINE MIR -13 249 94 404 256 122 56 chr1 194342604 194342784 -48321569 - MIR SINE MIR -2 260 69 2281 115 0 0 chr1 194342932 194343244 -48321109 - AluSx SINE Alu 0 312 1 264 30 0 0 chr1 194343532 194343565 -48320788 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1938 144 0 14 chr1 194343577 194343862 -48320491 - AluSx SINE Alu -31 281 1 23 33 0 0 chr1 194344570 194344600 -48319753 + AT_rich Low_complexity Low_complexity 1 30 0 2319 106 0 3 chr1 194344930 194345232 -48319121 + AluSg SINE Alu 1 301 -9 396 0 0 0 chr1 194345910 194345954 -48318399 + (TG)n Simple_repeat Simple_repeat 1 44 0 1605 191 0 11 chr1 194345954 194346236 -48318117 - AluJb SINE Alu -33 279 1 340 283 57 19 chr1 194346420 194346440 -48317913 - L1MA10 LINE L1 0 6334 6315 801 227 74 15 chr1 194346440 194346643 -48317710 - L1ME1 LINE L1 -8 6158 5944 1544 161 12 0 chr1 194346653 194346901 -48317452 + AluJo SINE Alu 42 292 -20 1203 109 6 0 chr1 194346975 194347140 -48317213 - AluSx SINE Alu -15 295 130 1591 77 0 10 chr1 194347141 194347348 -48317005 - AluY SINE Alu -4 307 103 297 28 0 0 chr1 194347350 194347386 -48316967 + AluY SINE Alu 51 86 -214 1222 78 0 0 chr1 194347386 194347528 -48316825 - AluSx SINE Alu -170 142 1 1578 161 10 65 chr1 194348217 194348509 -48315844 + AluJb SINE Alu 7 282 -30 198 103 0 0 chr1 194348509 194348538 -48315815 + (TAAG)n Simple_repeat Simple_repeat 2 30 0 225 314 14 0 chr1 194348550 194348620 -48315733 + MIR SINE MIR 82 152 -56 2496 132 45 94 chr1 194348753 194349145 -48315208 + MLT1D LTR MaLR 1 362 -143 2079 109 25 0 chr1 194349145 194349429 -48314924 - AluSq SINE Alu -13 300 10 2496 132 45 94 chr1 194349429 194349567 -48314786 + MLT1D LTR MaLR 362 505 0 2420 74 0 0 chr1 194350726 194351022 -48313331 + AluY SINE Alu 3 298 -13 1407 211 120 62 chr1 194351310 194351469 -48312884 - L1MC5 LINE L1 -37 7924 7776 1978 98 59 14 chr1 194351469 194351755 -48312598 - AluSq SINE Alu -14 299 1 1407 211 120 62 chr1 194351755 194351822 -48312531 - L1MC5 LINE L1 -185 7776 7714 1961 101 12 76 chr1 194351822 194352150 -48312203 + AluSx SINE Alu 1 307 -5 1407 211 120 62 chr1 194352150 194352595 -48311758 - L1MC5 LINE L1 -247 7714 7213 2304 101 0 0 chr1 194352746 194353043 -48311310 + AluSq SINE Alu 1 297 -16 2374 74 3 10 chr1 194353305 194353603 -48310750 - AluY SINE Alu -15 296 1 2553 142 47 2 chr1 194353629 194354037 -48310316 - MSTB LTR MaLR 0 426 1 28 0 0 0 chr1 194355102 194355130 -48309223 + AT_rich Low_complexity Low_complexity 1 28 0 1873 172 0 0 chr1 194355233 194355544 -48308809 - AluSx SINE Alu 0 311 1 186 268 93 41 chr1 194355596 194355693 -48308660 - L2 LINE L2 -17 3255 3154 195 338 99 18 chr1 194355724 194355946 -48308407 - L3b LINE CR1 -217 1366 1127 2153 120 7 3 chr1 194356161 194356469 -48307884 - AluSx SINE Alu -3 309 1 1226 206 99 0 chr1 194356858 194356974 -48307379 - AluJo SINE Alu -34 278 175 2463 68 7 0 chr1 194356974 194357283 -48307070 - AluY SINE Alu 0 311 1 1226 206 99 0 chr1 194357283 194357419 -48306934 - AluJo SINE Alu -137 175 1 1217 160 112 34 chr1 194357586 194357855 -48306498 + AluJb SINE Alu 12 301 -11 183 259 151 29 chr1 194357861 194358000 -48306353 - MIR SINE MIR -14 248 93 1556 153 60 0 chr1 194358149 194358397 -48305956 + AluJo SINE Alu 20 282 -30 2465 83 3 0 chr1 194358645 194358947 -48305406 + AluSx SINE Alu 2 304 -8 319 250 0 13 chr1 194359655 194359731 -48304622 + MIR SINE MIR 3 77 -185 493 296 93 26 chr1 194359832 194360085 -48304268 + L2 LINE L2 2784 3069 -244 920 184 44 48 chr1 194360114 194360211 -48304142 - L1ME2 LINE L1 0 6164 6068 2019 200 44 2 chr1 194360211 194360367 -48303986 + MSTB LTR MaLR 3 151 -275 2512 78 0 3 chr1 194360367 194360676 -48303677 - AluSq SINE Alu -5 308 1 2019 200 44 2 chr1 194360676 194360924 -48303429 + MSTB LTR MaLR 151 424 -2 920 184 44 48 chr1 194360924 194361054 -48303299 - L1ME2 LINE L1 -96 6068 5938 1336 196 65 11 chr1 194361146 194361422 -48302931 - AluJo SINE Alu -21 291 1 1919 163 3 0 chr1 194362205 194362499 -48301854 - AluJb SINE Alu -17 295 1 1703 201 57 45 chr1 194362616 194362948 -48301405 - L1ME2 LINE L1 -213 5951 5610 2305 92 3 3 chr1 194362948 194363242 -48301111 - AluSx SINE Alu -18 294 1 1703 201 57 45 chr1 194363242 194363381 -48300972 - L1ME2 LINE L1 -554 5610 5474 667 252 26 61 chr1 194363409 194363722 -48300631 - AluJo SINE Alu 0 302 1 942 121 8 0 chr1 194364150 194364282 -48300071 - FLAM_C SINE Alu 0 133 1 543 198 149 17 chr1 194364283 194364443 -48299910 - L1ME LINE L1 -653 5511 5373 180 0 0 0 chr1 194364443 194364463 -48299890 + (TG)n Simple_repeat Simple_repeat 2 21 0 543 198 149 17 chr1 194364463 194364653 -48299700 - L1ME LINE L1 -791 5373 5136 * 803 140 0 28 chr1 194364620 194364763 -48299590 - L1MD3 LINE L1 -1 7994 7856 2345 89 3 25 chr1 194364816 194365130 -48299223 - AluSx SINE Alu -5 307 1 1734 187 7 0 chr1 194365181 194365481 -48298872 + AluJo SINE Alu 1 302 -10 774 149 6 31 chr1 194365491 194365666 -48298687 + AluJb SINE Alu 3 216 -96 198 174 0 0 chr1 194365775 194365821 -48298532 + A-rich Low_complexity Low_complexity 1 46 0 2247 107 0 3 chr1 194365940 194366239 -48298114 - AluSx SINE Alu -14 298 1 1330 151 6 71 chr1 194366292 194366603 -48297750 - L1ME LINE L1 -981 5165 4875 325 285 133 6 chr1 194366616 194366781 -48297572 - L1ME LINE L1 -2008 4138 3953 269 273 50 33 chr1 194366792 194366913 -48297440 - L1ME3A LINE L1 -7 6163 6041 391 311 148 0 chr1 194367116 194367312 -48297041 + L2 LINE L2 2260 2484 -830 297 258 103 10 chr1 194367309 194367406 -48296947 - L2 LINE L2 -2 3311 3206 * 1971 90 4 11 chr1 194367497 194367763 -48296590 - AluSx SINE Alu -6 306 43 514 67 0 67 chr1 194367763 194367848 -48296505 - AluS SINE Alu -233 79 1 432 345 75 64 chr1 194367852 194367942 -48296411 + L2 LINE L2 2575 2662 -610 2279 114 0 3 chr1 194367942 194368248 -48296105 - AluSx SINE Alu -7 305 1 432 345 75 64 chr1 194368248 194368579 -48295774 + L2 LINE L2 2662 3068 -204 1152 185 130 26 chr1 194368579 194368849 -48295504 - AluJo SINE Alu -4 298 1 432 345 75 64 chr1 194368849 194369056 -48295297 + L2 LINE L2 3068 3271 -1 28 48 0 0 chr1 194369730 194369772 -48294581 + AT_rich Low_complexity Low_complexity 1 42 0 1522 117 31 0 chr1 194369866 194370089 -48294264 - MER30 DNA MER1_type 0 230 1 2278 42 39 7 chr1 194370323 194370606 -48293747 - AluY SINE Alu -18 293 2 2653 23 10 0 chr1 194370837 194371141 -48293212 - AluY SINE Alu -4 307 1 195 42 0 0 chr1 194371248 194371272 -48293081 + (T)n Simple_repeat Simple_repeat 1 24 0 417 345 79 54 chr1 194371385 194371480 -48292873 + L2 LINE L2 1834 1925 -1389 2319 103 0 0 chr1 194371480 194371781 -48292572 - AluSg SINE Alu -9 301 1 417 345 79 54 chr1 194371781 194372239 -48292114 + L2 LINE L2 1925 2401 -913 434 251 67 28 chr1 194372280 194372436 -48291917 - MER5A DNA MER1_type 0 189 1 466 267 9 9 chr1 194372855 194372960 -48291393 - MER5A DNA MER1_type -50 139 35 212 304 108 47 chr1 194373018 194373232 -48291121 + L2 LINE L2 2826 3052 -220 498 33 0 0 chr1 194374401 194374461 -48289892 + (TG)n Simple_repeat Simple_repeat 2 61 0 4400 47 0 0 chr1 194374919 194375454 -48288899 + L1PA5 LINE L1 5615 6149 -5 221 171 0 0 chr1 194375493 194375534 -48288819 + A-rich Low_complexity Low_complexity 1 41 0 2081 132 3 0 chr1 194375618 194375913 -48288440 + AluSx SINE Alu 1 296 -16 2045 155 0 0 chr1 194376465 194376762 -48287591 + AluSx SINE Alu 1 297 -15 354 258 40 16 chr1 194376822 194376946 -48287407 - L1ME3 LINE L1 -306 5856 5730 4360 158 5 4 chr1 194376997 194377757 -48286596 + L1MB7 LINE L1 5416 6176 -8 376 298 185 19 chr1 194377777 194377982 -48286371 - L1ME3 LINE L1 -457 5713 5475 546 219 0 17 chr1 194378613 194378732 -48285621 - MIR3 SINE MIR -13 195 79 186 118 0 0 chr1 194378813 194378847 -48285506 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 401 252 52 15 chr1 194378856 194378950 -48285403 - MER92B LTR ERV1 -37 599 497 2457 70 17 0 chr1 194378950 194379251 -48285102 - AluY SINE Alu -5 306 1 401 252 52 15 chr1 194379251 194379291 -48285062 - MER92B LTR ERV1 -139 497 460 2067 85 44 0 chr1 194379339 194379642 -48284711 - AluYa5 SINE Alu 0 315 1 25 0 0 0 chr1 194381020 194381045 -48283308 + AT_rich Low_complexity Low_complexity 1 25 0 314 179 8 106 chr1 194381162 194381213 -48283140 + L1MB8 LINE L1 4398 4452 -1694 2086 104 0 70 chr1 194381213 194381529 -48282824 - AluSx SINE Alu -18 294 1 314 179 8 106 chr1 194381529 194381600 -48282753 + L1MB8 LINE L1 4452 4508 -1638 363 194 163 0 chr1 194381658 194381756 -48282597 + MIR SINE MIR 149 262 0 327 269 176 10 chr1 194381899 194382211 -48282142 + L1ME LINE L1 4724 5087 -1059 2059 49 12 0 chr1 194382386 194382631 -48281722 + AluY SINE Alu 1 248 -63 2270 79 35 0 chr1 194382680 194382970 -48281383 + AluSg SINE Alu 1 300 -10 1849 168 44 7 chr1 194382975 194383386 -48280967 + L1MB8 LINE L1 4653 5078 -1068 360 169 44 110 chr1 194383428 194383521 -48280832 + L1MB8 LINE L1 5065 5148 -998 1514 197 17 10 chr1 194383521 194383810 -48280543 - AluJo SINE Alu -13 299 9 360 169 44 110 chr1 194383810 194383852 -48280501 + L1MB8 LINE L1 5148 5191 -955 1092 235 8 12 chr1 194383852 194384099 -48280254 + AluJo SINE Alu 50 295 -17 2103 155 45 29 chr1 194384100 194384572 -48279781 + L1MB8 LINE L1 5195 5678 -500 1922 165 30 60 chr1 194384741 194385118 -48279235 + L1MB8 LINE L1 5647 6007 -171 1958 129 10 29 chr1 194385118 194385428 -48278925 - AluJb SINE Alu -5 307 4 1922 165 30 60 chr1 194385428 194385547 -48278806 + L1MB8 LINE L1 6007 6128 -50 1786 186 0 7 chr1 194385555 194385851 -48278502 - AluSx SINE Alu -18 294 1 359 131 0 0 chr1 194385854 194385915 -48278438 + L1MB8 LINE L1 6112 6172 -6 325 263 158 24 chr1 194386085 194386332 -48278021 + L1ME LINE L1 5494 5773 -348 896 139 0 0 chr1 194386384 194386513 -48277840 + FLAM_C SINE Alu 3 131 -2 1549 117 124 0 chr1 194386660 194386926 -48277427 + AluY SINE Alu 1 299 -2 2325 92 3 0 chr1 194387076 194387436 -48276917 + AluSp SINE Alu 1 361 0 2139 122 30 0 chr1 194387444 194387748 -48276605 + AluSq SINE Alu 1 313 0 436 327 148 39 chr1 194387849 194388711 -48275642 + L2 LINE L2 395 1402 -1912 186 313 0 0 chr1 194388713 194388761 -48275592 + L2 LINE L2 1839 1886 -1428 525 277 87 16 chr1 194388830 194389014 -48275339 + MIR SINE MIR 4 200 -62 220 278 0 0 chr1 194389119 194389173 -48275180 + (CTA)n Simple_repeat Simple_repeat 2 55 0 1235 177 0 26 chr1 194389204 194389430 -48274923 - AluJb SINE Alu -6 306 87 525 320 181 23 chr1 194389447 194390097 -48274256 + L2 LINE L2 1460 2212 -1102 1102 146 6 0 chr1 194390516 194390681 -48273672 - AluSg/x SINE Alu -13 297 132 1406 201 58 4 chr1 194391831 194392105 -48272248 - AluJo SINE Alu -18 294 6 2375 95 0 0 chr1 194392105 194392399 -48271954 - AluY SINE Alu -17 294 1 2234 99 19 39 chr1 194392448 194392812 -48271541 - L1PA16 LINE L1 -1 6165 5809 432 358 109 49 chr1 194392875 194393224 -48271129 - L2 LINE L2 -6 3266 2897 837 284 0 22 chr1 194393252 194393481 -48270872 - MIR SINE MIR -1 261 38 1253 212 71 3 chr1 194393494 194393777 -48270576 + MER58B DNA MER1_type 1 302 -39 1239 204 3 71 chr1 194393782 194394076 -48270277 - AluJo SINE Alu -1 311 38 237 150 0 0 chr1 194394076 194394116 -48270237 + MER58B DNA MER1_type 293 332 -9 383 151 14 0 chr1 194395385 194395463 -48268890 + L1ME2 LINE L1 6084 6165 -1 635 215 39 107 chr1 194395692 194395925 -48268428 - MER102b DNA MER1_type -23 318 102 433 410 35 12 chr1 194396500 194396839 -48267514 + L2 LINE L2 2511 2857 -457 234 349 67 72 chr1 194396944 194397077 -48267276 + L2 LINE L2 2888 3020 -252 2111 94 9 38 chr1 194397077 194397397 -48266956 - AluY SINE Alu 0 311 1 234 349 67 72 chr1 194397397 194397650 -48266703 + L2 LINE L2 3020 3272 0 861 245 59 28 chr1 194398115 194398368 -48265985 - MIR SINE MIR 0 262 2 287 281 49 24 chr1 194399180 194399262 -48265091 + MIR SINE MIR 63 146 -116 1495 183 71 16 chr1 194400424 194400746 -48263607 - MER2 DNA MER2_type -5 340 1 509 176 162 37 chr1 194401139 194401275 -48263078 - MLT1D LTR MaLR -2 503 351 1250 133 26 139 chr1 194401283 194401432 -48262921 - L1M3 LINE L1 -375 5796 5705 1968 152 26 3 chr1 194401432 194401734 -48262619 - AluSx SINE Alu -2 310 2 1250 133 26 139 chr1 194401734 194401923 -48262430 - L1M3 LINE L1 -466 5705 5496 2306 89 3 3 chr1 194401923 194402216 -48262137 - AluSc SINE Alu -16 293 1 857 155 13 0 chr1 194402250 194402405 -48261948 - FRAM SINE Alu 0 40 1 1289 130 18 9 chr1 194402408 194402667 -48261686 - L1M3 LINE L1 -696 5487 5226 716 117 29 0 chr1 194402704 194402807 -48261546 - U6 snRNA snRNA 0 107 2 287 215 0 0 chr1 194402808 194402873 -48261480 - L1M3 LINE L1 -909 5237 5173 284 273 52 0 chr1 194403463 194403540 -48260813 + L3b LINE CR1 1303 1383 -200 458 266 138 27 chr1 194404251 194404439 -48259914 - MIR SINE MIR -35 227 19 700 138 83 0 chr1 194404452 194404561 -48259792 - FLAM_C SINE Alu -15 118 1 566 231 17 0 chr1 194404767 194404884 -48259469 + FLAM_A SINE Alu 2 120 -13 23 54 0 0 chr1 194405397 194405434 -48258919 + AT_rich Low_complexity Low_complexity 1 37 0 4052 163 140 79 chr1 194406109 194406525 -48257828 - Charlie1a DNA MER1_type -1306 1455 1066 2091 126 14 0 chr1 194406525 194406818 -48257535 - AluSx SINE Alu -15 297 1 4052 163 140 79 chr1 194406818 194407373 -48256980 - Charlie1a DNA MER1_type -1695 1066 383 1910 159 30 0 chr1 194407373 194407675 -48256678 - AluJb SINE Alu -1 311 1 4052 163 140 79 chr1 194407675 194408001 -48256352 - Charlie1a DNA MER1_type -2378 383 78 475 93 0 67 chr1 194408562 194408637 -48255716 - FLAM_A SINE Alu -18 124 55 2372 80 7 0 chr1 194408841 194409142 -48255211 + AluSp SINE Alu 1 303 -10 434 169 13 13 chr1 194409287 194409364 -48254989 + L2 LINE L2 3237 3313 0 224 240 0 0 chr1 194410120 194410170 -48254183 + L2 LINE L2 3264 3313 0 2379 96 129 26 chr1 194412374 194412792 -48251561 - MER4C LTR ERV1 -4 461 1 241 352 62 33 chr1 194412916 194413126 -48251227 - L2 LINE L2 -191 3081 2866 189 77 0 0 chr1 194413145 194413171 -48251182 - MIR SINE MIR -10 252 227 218 235 137 0 chr1 194413457 194413508 -48250845 - L2 LINE L2 -10 3262 3205 1794 128 80 0 chr1 194413561 194413835 -48250518 - AluSx SINE Alu -16 296 1 23 0 0 0 chr1 194413887 194413910 -48250443 + AT_rich Low_complexity Low_complexity 1 23 0 2170 121 0 10 chr1 194413940 194414247 -48250106 + AluSx SINE Alu 1 304 -8 183 219 0 0 chr1 194414259 194414300 -48250053 + L2 LINE L2 3232 3272 0 393 259 88 51 chr1 194414388 194414606 -48249747 + MIR SINE MIR 1 216 -46 21 36 0 0 chr1 194414683 194414711 -48249642 + AT_rich Low_complexity Low_complexity 1 28 0 486 248 68 0 chr1 194416050 194416183 -48248170 + MER58B DNA MER1_type 197 338 -3 1991 137 0 3 chr1 194416259 194416570 -48247783 - AluSx SINE Alu 0 310 1 2199 123 3 0 chr1 194416905 194417207 -48247146 - AluSx SINE Alu -8 304 2 465 286 30 48 chr1 194417701 194417915 -48246438 + MIR SINE MIR 8 216 -46 21 0 0 0 chr1 194419244 194419265 -48245088 + AT_rich Low_complexity Low_complexity 1 21 0 2281 100 0 19 chr1 194420303 194420614 -48243739 - AluY SINE Alu -6 305 1 400 121 22 77 chr1 194420636 194420727 -48243626 - FLAM SINE Alu -10 133 48 301 171 0 26 chr1 194420889 194420958 -48243395 - Alu SINE Alu -255 44 1 299 183 122 0 chr1 194422764 194422846 -48241507 - L1MD3 LINE L1 -1 7994 7903 528 294 34 0 chr1 194423756 194423875 -48240478 + L2 LINE L2 3144 3266 -6 481 125 102 11 chr1 194424540 194424628 -48239725 + FLAM_C SINE Alu 30 125 -18 2182 119 7 0 chr1 194424938 194425233 -48239120 - AluSx SINE Alu -15 297 1 249 303 113 107 chr1 194425973 194426310 -48238043 + L2 LINE L2 2605 2941 -331 290 219 0 110 chr1 194426545 194426627 -48237726 + L2 LINE L2 3192 3264 -8 426 262 152 43 chr1 194426746 194426956 -48237397 - MIR SINE MIR 0 262 30 186 295 13 26 chr1 194426972 194427050 -48237303 - L2 LINE L2 -1078 2236 2160 1569 196 40 38 chr1 194427546 194427919 -48236434 - MLT1A2 LTR MaLR 0 374 1 1851 152 0 21 chr1 194428648 194428963 -48235390 + AluJb SINE Alu 5 313 0 22 0 0 0 chr1 194429139 194429161 -48235192 + AT_rich Low_complexity Low_complexity 1 22 0 207 105 0 26 chr1 194429516 194429554 -48234799 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 1599 189 10 10 chr1 194429716 194430022 -48234331 + AluJo SINE Alu 1 306 -6 355 322 20 32 chr1 194430031 194430200 -48234153 - MIR3 SINE MIR -41 167 28 241 325 33 83 chr1 194433576 194433696 -48230657 + L2 LINE L2 2946 3059 -213 416 308 9 0 chr1 194433727 194433834 -48230519 + L2 LINE L2 3161 3268 -4 22 0 0 0 chr1 194433977 194433999 -48230354 + AT_rich Low_complexity Low_complexity 1 22 0 674 195 0 16 chr1 194433999 194434127 -48230226 - FLAM_C SINE Alu -7 126 1 419 210 193 59 chr1 194434127 194434246 -48230107 + MER5A DNA MER1_type 49 183 -6 2145 115 34 7 chr1 194434518 194434814 -48229539 - AluSx SINE Alu -8 304 1 24 53 0 0 chr1 194435384 194435422 -48228931 + AT_rich Low_complexity Low_complexity 1 38 0 272 380 70 36 chr1 194436921 194437250 -48227103 - L3b LINE CR1 -131 1452 1113 213 295 95 32 chr1 194438765 194438860 -48225493 - MIR SINE MIR -57 205 105 236 128 77 51 chr1 194438864 194438879 -48225474 + (TTATA)n Simple_repeat Simple_repeat 3 16 -66 216 0 0 0 chr1 194438879 194438903 -48225450 + (TC)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr1 194438902 194438923 -48225430 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 236 128 77 51 chr1 194438903 194438923 -48225430 + (TTATA)n Simple_repeat Simple_repeat 16 34 -48 2175 106 0 20 chr1 194438923 194439224 -48225129 - AluY SINE Alu -16 295 1 236 128 77 51 chr1 194439224 194439285 -48225068 + (TTATA)n Simple_repeat Simple_repeat 34 82 0 627 243 126 94 chr1 194439381 194439859 -48224494 - MLT1J LTR MaLR -11 500 8 450 204 134 28 chr1 194439864 194440006 -48224347 - MIR SINE MIR -58 204 48 297 356 52 7 chr1 194440049 194440184 -48224169 - MIR SINE MIR -13 249 109 27 29 0 0 chr1 194440670 194440704 -48223649 + AT_rich Low_complexity Low_complexity 1 34 0 2268 85 0 10 chr1 194441946 194442241 -48222112 - AluSc SINE Alu -17 292 1 2473 63 0 0 chr1 194442350 194442651 -48221702 - AluY SINE Alu -10 301 1 183 196 98 39 chr1 194442708 194442759 -48221594 - MIR SINE MIR -101 161 108 295 321 72 59 chr1 194442923 194443144 -48221209 + L3b LINE CR1 1279 1502 -81 6844 124 51 48 chr1 194443272 194443818 -48220535 - L1 LINE L1 -1237 4909 4366 240 0 75 0 chr1 194443818 194443858 -48220495 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 10771 48 4 38 chr1 194443858 194445268 -48219085 - SVA Other Other -23 1363 1 6844 124 51 48 chr1 194445268 194445498 -48218855 - L1 LINE L1 -1780 4366 4138 841 149 0 22 chr1 194445498 194445632 -48218721 - FLAM_C SINE Alu -2 131 1 6844 124 51 48 chr1 194445632 194446236 -48218117 - L1 LINE L1 -2008 4138 3523 217 132 19 19 chr1 194446438 194446491 -48217862 + T-rich Low_complexity Low_complexity 3 55 0 497 325 101 58 chr1 194447081 194447317 -48217036 - L2 LINE L2 0 3313 3089 1516 201 42 0 chr1 194447317 194447600 -48216753 + AluJo SINE Alu 1 295 -17 497 325 101 58 chr1 194447600 194447880 -48216473 - L2 LINE L2 -224 3089 2822 2912 161 18 13 chr1 194447880 194448426 -48215927 - L1MB8 LINE L1 -18 6160 5612 497 325 101 58 chr1 194448426 194448643 -48215710 - L2 LINE L2 -491 2822 2551 2278 123 0 0 chr1 194448652 194448962 -48215391 + AluSx SINE Alu 1 310 -2 289 273 58 65 chr1 194449382 194449521 -48214832 + L1MEd LINE L1 510 647 -5472 368 325 99 35 chr1 194449850 194449933 -48214420 - L2 LINE L2 -7 3306 3230 2183 121 0 10 chr1 194449933 194450246 -48214107 + AluSx SINE Alu 1 310 -2 368 325 99 35 chr1 194450246 194450445 -48213908 - L2 LINE L2 -83 3230 3006 222 353 0 29 chr1 194450845 194450947 -48213406 - L2 LINE L2 -475 2839 2741 358 328 0 23 chr1 194451133 194451261 -48213092 - L2 LINE L2 -475 2839 2715 353 204 157 0 chr1 194451860 194451968 -48212385 + L1ME4a LINE L1 5986 6110 -11 369 333 0 9 chr1 194452271 194452379 -48211974 - MIR SINE MIR -60 148 42 804 144 0 23 chr1 194453744 194453876 -48210477 + FLAM_A SINE Alu 4 132 -1 278 248 85 39 chr1 194453883 194454012 -48210341 + MIR SINE MIR 61 195 -67 234 263 0 18 chr1 194454034 194454091 -48210262 + MIR SINE MIR 157 212 -50 453 168 134 8 chr1 194454741 194454860 -48209493 + L1MB8 LINE L1 6045 6178 0 244 245 0 0 chr1 194456931 194456980 -48207373 + L2 LINE L2 3219 3267 -5 264 313 92 8 chr1 194457253 194457384 -48206969 + MIR3 SINE MIR 30 171 -37 490 329 113 14 chr1 194457707 194457920 -48206433 - MIR SINE MIR -6 256 23 474 335 123 29 chr1 194458733 194459277 -48205076 + L2 LINE L2 1681 2275 -1039 213 172 17 86 chr1 194459280 194459338 -48205015 + MIR SINE MIR 194 247 -15 7632 26 0 0 chr1 194459892 194461121 -48203232 - L1PA4 LINE L1 0 6155 4924 1979 95 81 4 chr1 194461338 194461611 -48202742 + AluSx SINE Alu 1 294 -18 200 343 86 9 chr1 194461774 194461879 -48202474 - L2 LINE L2 -1 3312 3200 589 97 51 0 chr1 194462043 194462158 -48202195 + L1PA13 LINE L1 6026 6160 -1 536 216 36 48 chr1 194462177 194462344 -48202009 + L1ME1 LINE L1 5997 6161 -5 230 235 29 0 chr1 194463159 194463227 -48201126 - L1ME4a LINE L1 -70 6051 5982 1815 166 0 38 chr1 194463278 194463598 -48200755 + AluJo SINE Alu 1 308 -4 246 294 79 75 chr1 194463937 194464417 -48199936 - L1ME4a LINE L1 -2009 5799 5318 247 177 127 13 chr1 194464888 194464967 -48199386 - L1ME LINE L1 -303 5818 5731 594 202 0 9 chr1 194465424 194465538 -48198815 - MER58B DNA MER1_type 0 341 229 530 225 147 0 chr1 194465543 194465672 -48198681 + MER58B DNA MER1_type 192 339 -2 204 206 0 0 chr1 194466387 194466421 -48197932 + polypyrimidine Low_complexity Low_complexity 3 36 0 1875 136 38 7 chr1 194466956 194467243 -48197110 - AluSx SINE Alu -16 296 1 908 188 118 0 chr1 194467365 194467551 -48196802 - MER3 DNA MER1_type 0 209 2 557 314 14 7 chr1 194467672 194467812 -48196541 - MIR3 SINE MIR -21 187 47 180 228 70 35 chr1 194468299 194468356 -48195997 + MIR SINE MIR 90 148 -114 2102 123 0 17 chr1 194468585 194468887 -48195466 + AluSx SINE Alu 3 299 -13 27 73 0 0 chr1 194469008 194469063 -48195290 + AT_rich Low_complexity Low_complexity 1 55 0 2008 115 10 7 chr1 194469067 194469363 -48194990 + AluSx SINE Alu 1 297 -15 600 282 43 73 chr1 194469895 194470129 -48194224 - MIR SINE MIR -32 230 4 753 153 0 8 chr1 194470222 194470346 -48194007 - AluJb SINE Alu 0 312 190 518 174 18 9 chr1 194470812 194470980 -48193373 - MER58B DNA MER1_type -1 340 5 290 237 42 25 chr1 194471967 194472085 -48192268 + L1ME LINE L1 185 304 -5901 844 190 50 17 chr1 194472383 194472562 -48191791 + MER5A DNA MER1_type 4 188 -1 540 252 86 42 chr1 194472670 194473095 -48191258 + L1ME LINE L1 808 1163 -5042 3421 151 84 43 chr1 194473097 194473571 -48190782 + Charlie1 DNA MER1_type 1763 2285 -476 2021 115 32 63 chr1 194473571 194473919 -48190434 - MER1B DNA MER1_type 0 337 1 3421 151 84 43 chr1 194473919 194474253 -48190100 + Charlie1 DNA MER1_type 2285 2604 -157 5523 145 22 23 chr1 194474264 194475940 -48188413 - L1MA6 LINE L1 -7 7712 6034 484 107 0 13 chr1 194475944 194476019 -48188334 - Alu SINE Alu -11 299 226 663 122 0 4 chr1 194476020 194476141 -48188212 + BaEV-int LTR ERV1 1613 1714 -4935 749 204 253 0 chr1 194476162 194476387 -48187966 - LTR10A LTR ERV1 -327 282 1 1775 198 31 17 chr1 194476387 194477040 -48187313 - L1MA6 LINE L1 -3606 3959 3303 1426 226 3 18 chr1 194477132 194477519 -48186834 - L1MA6 LINE L1 -4158 3408 2790 1503 297 101 45 chr1 194477555 194478516 -48185837 - L1MA6 LINE L1 -5771 1795 781 1762 173 0 0 chr1 194478535 194478847 -48185506 - AluJb SINE Alu 0 312 1 730 142 62 31 chr1 194478849 194479011 -48185342 + Charlie1 DNA MER1_type 2595 2761 0 1881 261 60 57 chr1 194479014 194479189 -48185164 + L1M4 LINE L1 3323 3496 -2650 1776 156 24 10 chr1 194479189 194479484 -48184869 + AluJo SINE Alu 1 299 -13 1881 261 60 57 chr1 194479484 194480211 -48184142 + L1M4 LINE L1 3496 4228 -1918 1671 151 12 33 chr1 194480236 194480265 -48184088 - MER44D DNA MER2_type -1882 605 577 2033 139 3 0 chr1 194480265 194480568 -48183785 - AluSq SINE Alu -3 310 7 1671 151 12 33 chr1 194480568 194481023 -48183330 - MER44D DNA MER2_type -1910 577 1 204 91 0 0 chr1 194481391 194481415 -48182938 + (CA)n Simple_repeat Simple_repeat 2 28 -6 1874 131 16 42 chr1 194481415 194481727 -48182626 + AluSx SINE Alu 1 304 -8 204 91 0 0 chr1 194481727 194481735 -48182618 + (CA)n Simple_repeat Simple_repeat 27 34 0 3073 130 85 7 chr1 194481970 194482532 -48181821 + L1MB7 LINE L1 5570 6175 -9 236 302 27 124 chr1 194482548 194482773 -48181580 - L2 LINE L2 -559 2755 2553 222 324 47 34 chr1 194482804 194482952 -48181401 - L2 LINE L2 -1217 2097 1948 266 206 55 14 chr1 194483054 194483127 -48181226 + L2 LINE L2 3159 3234 -79 3851 134 62 7 chr1 194483127 194483786 -48180567 - L1MB3 LINE L1 0 6183 5483 1935 134 0 73 chr1 194483786 194484115 -48180238 - AluSq SINE Alu -8 305 1 3851 134 62 7 chr1 194484115 194484151 -48180202 - L1MB3 LINE L1 -700 5483 5450 22 56 0 0 chr1 194484199 194484235 -48180118 + AT_rich Low_complexity Low_complexity 1 36 0 1108 231 27 0 chr1 194486299 194486520 -48177833 - MIR SINE MIR -24 238 12 587 215 8 8 chr1 194486654 194486784 -48177569 - MER94 DNA DNA 0 134 5 777 259 65 14 chr1 194486873 194487089 -48177264 - MIR SINE MIR -4 258 32 21 0 0 0 chr1 194487246 194487267 -48177086 + AT_rich Low_complexity Low_complexity 1 21 0 710 106 0 18 chr1 194487281 194487422 -48176931 + AluSg/x SINE Alu 192 312 0 395 245 32 0 chr1 194488504 194488598 -48175755 + L2 LINE L2 3216 3312 -1 24 32 0 0 chr1 194489102 194489133 -48175220 + AT_rich Low_complexity Low_complexity 1 31 0 673 193 35 0 chr1 194491668 194491813 -48172540 - L1ME2 LINE L1 0 6164 6015 398 193 0 12 chr1 194491817 194491900 -48172453 + L1ME2 LINE L1 5930 6011 -153 2012 151 0 0 chr1 194491928 194492220 -48172133 - AluJb SINE Alu -20 292 1 1709 118 11 11 chr1 194492554 194492826 -48171527 + L1MA5 LINE L1 5411 5682 -618 273 119 0 0 chr1 194492831 194492873 -48171480 + tRNA-Glu-GAG tRNA tRNA 1 42 -33 363 98 0 0 chr1 194492873 194492934 -48171419 + (TC)n Simple_repeat Simple_repeat 2 62 0 3525 139 43 0 chr1 194492935 194493533 -48170820 + L1MA5 LINE L1 5673 6296 -4 208 290 6 0 chr1 194494298 194494379 -48169974 - MIR SINE MIR -23 185 103 2612 249 90 36 chr1 194495162 194496337 -48168016 - L2 LINE L2 -5 3308 2072 2113 102 7 14 chr1 194496780 194497074 -48167279 + AluSx SINE Alu 1 292 -20 387 252 49 32 chr1 194497182 194497305 -48167048 - MIR3 SINE MIR -21 187 63 923 198 73 0 chr1 194497378 194497570 -48166783 + MIR SINE MIR 1 206 -56 747 270 124 17 chr1 194499521 194500136 -48164217 + MER20B DNA MER1_type 32 752 -31 22 56 0 0 chr1 194500995 194501031 -48163322 + AT_rich Low_complexity Low_complexity 1 36 0 1164 179 9 27 chr1 194501543 194501767 -48162586 - MER58A DNA MER1_type -4 220 1 225 260 45 119 chr1 194502950 194503127 -48161226 + MER5A DNA MER1_type 17 180 -9 486 250 52 9 chr1 194503353 194503469 -48160884 - L2 LINE L2 -1 3312 3192 30 0 0 0 chr1 194503534 194503564 -48160789 + AT_rich Low_complexity Low_complexity 1 30 0 363 153 33 66 chr1 194503568 194503751 -48160602 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 2578 87 5 31 chr1 194503767 194503892 -48160461 - L1PB2 LINE L1 -4 6147 6020 2335 75 0 3 chr1 194503892 194504185 -48160168 - AluY SINE Alu -18 293 2 2578 87 5 31 chr1 194504185 194504448 -48159905 - L1PB2 LINE L1 -131 6020 5769 928 112 0 0 chr1 194504448 194504573 -48159780 - AluSp/q SINE Alu -15 298 174 750 298 38 13 chr1 194504599 194504837 -48159516 - L2 LINE L2 -981 2333 2090 611 281 30 51 chr1 194505113 194505348 -48159005 + MIR SINE MIR 20 249 -13 333 319 59 99 chr1 194505373 194505660 -48158693 + L2 LINE L2 2908 3184 -88 2013 138 0 0 chr1 194505660 194505943 -48158410 - AluSx SINE Alu -29 283 1 333 319 59 99 chr1 194505943 194505959 -48158394 + L2 LINE L2 3184 3199 -73 695 297 14 9 chr1 194506059 194506281 -48158072 - L2 LINE L2 -896 2418 2196 3204 127 33 20 chr1 194506615 194506726 -48157627 - L1P4 LINE L1 -549 5612 5504 261 0 0 0 chr1 194506726 194506755 -48157598 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3204 127 33 20 chr1 194506755 194507456 -48156897 - L1P4 LINE L1 -657 5504 4793 3978 63 8 0 chr1 194507457 194507967 -48156386 + L1PA14 LINE L1 5638 6151 -10 1699 170 37 7 chr1 194508224 194508524 -48155829 - AluJb SINE Alu -3 309 1 834 250 74 0 chr1 194508629 194508845 -48155508 + MIR SINE MIR 23 254 -8 337 286 32 65 chr1 194510236 194510300 -48154053 + L1ME4a LINE L1 5377 5442 -2366 2103 129 0 0 chr1 194510300 194510595 -48153758 - AluSx SINE Alu -17 295 1 337 286 32 65 chr1 194510595 194510715 -48153638 + L1ME4a LINE L1 5442 5555 -2253 249 164 269 0 chr1 194510887 194510954 -48153399 - L2 LINE L2 -4 3309 3225 384 219 10 10 chr1 194510969 194511065 -48153288 + L1ME4a LINE L1 5711 5806 -315 381 267 150 15 chr1 194511123 194511389 -48152964 + L1ME4a LINE L1 5789 6090 -31 1974 148 0 23 chr1 194511931 194512241 -48152112 - AluSx SINE Alu -9 303 1 586 335 27 11 chr1 194512813 194513001 -48151352 - MIR3 SINE MIR -6 202 12 377 307 74 34 chr1 194514276 194514899 -48149454 + L1MEd LINE L1 983 1726 -764 26 50 0 0 chr1 194515056 194515096 -48149257 + AT_rich Low_complexity Low_complexity 1 40 0 367 271 44 6 chr1 194515561 194515742 -48148611 + L1MEd LINE L1 2455 2642 -3487 3188 237 148 78 chr1 194515788 194516369 -48147984 - L2 LINE L2 0 3313 2774 2274 92 0 0 chr1 194516369 194516682 -48147671 - AluSg SINE Alu 0 313 1 3188 237 148 78 chr1 194516682 194517038 -48147315 - L2 LINE L2 -539 2774 2444 3551 76 6 18 chr1 194517038 194517537 -48146816 - L1PB1 LINE L1 0 6151 5659 2200 110 3 3 chr1 194517547 194517848 -48146505 - AluSx SINE Alu -11 301 1 3188 237 148 78 chr1 194517848 194518371 -48145982 - L2 LINE L2 -877 2436 1951 1989 111 14 14 chr1 194518371 194518660 -48145693 - AluSx SINE Alu -19 293 5 3188 237 148 78 chr1 194518660 194519450 -48144903 - L2 LINE L2 -1362 1951 811 713 244 72 23 chr1 194519500 194519848 -48144505 + L1MEd LINE L1 2858 3222 -2907 285 316 10 51 chr1 194520193 194520487 -48143866 + L1MEd LINE L1 3322 3603 -2526 224 30 30 0 chr1 194521393 194521426 -48142927 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 21 57 0 0 chr1 194522464 194522499 -48141854 + AT_rich Low_complexity Low_complexity 1 35 0 227 213 53 0 chr1 194522533 194522608 -48141745 - L1MA10 LINE L1 -1 6333 6255 453 245 117 38 chr1 194522815 194522998 -48141355 - MER20B DNA MER1_type -5 214 16 25 0 0 0 chr1 194524008 194524033 -48140320 + AT_rich Low_complexity Low_complexity 1 25 0 228 327 55 0 chr1 194524102 194524212 -48140141 + L2 LINE L2 3197 3312 -1 22 0 0 0 chr1 194524224 194524246 -48140107 + AT_rich Low_complexity Low_complexity 1 22 0 4445 99 19 0 chr1 194524522 194525145 -48139208 - MER41B LTR ERV1 0 635 1 325 189 79 39 chr1 194525154 194525281 -48139072 + MER112 DNA MER1_type 109 240 -20 290 189 68 0 chr1 194525444 194525518 -48138835 - L1MC4 LINE L1 -1 8041 7963 2347 76 3 0 chr1 194525530 194525821 -48138532 - AluSp SINE Alu -5 308 17 333 0 0 0 chr1 194525958 194525995 -48138358 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1375 216 4 4 chr1 194525995 194526135 -48138218 - AluJb SINE Alu -48 264 122 261 0 0 0 chr1 194526135 194526164 -48138189 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1375 216 4 4 chr1 194526164 194526287 -48138066 - AluJb SINE Alu -189 123 1 3695 212 96 18 chr1 194526287 194527323 -48137030 - L1MC4 LINE L1 -468 7574 6459 292 342 138 20 chr1 194527655 194527709 -48136644 - MIR SINE MIR -1 261 215 348 24 0 0 chr1 194527709 194527750 -48136603 + (TG)n Simple_repeat Simple_repeat 2 42 0 292 342 138 20 chr1 194527750 194527913 -48136440 - MIR SINE MIR -47 215 20 25 0 0 0 chr1 194528010 194528035 -48136318 + AT_rich Low_complexity Low_complexity 1 25 0 371 229 0 12 chr1 194528739 194528822 -48135531 + MIR SINE MIR 67 148 -114 5063 105 74 16 chr1 194528822 194529727 -48134626 - Tigger3b DNA MER2_type 0 1231 274 2400 72 0 19 chr1 194529734 194530041 -48134312 + AluY SINE Alu 1 301 -10 552 160 30 10 chr1 194530047 194530147 -48134206 - Tigger3b DNA MER2_type -1129 102 1 2070 117 7 19 chr1 194530650 194530959 -48133394 - AluSq SINE Alu -7 306 2 587 276 33 7 chr1 194534970 194535122 -48129231 - MIR SINE MIR -79 183 28 22 0 0 0 chr1 194536051 194536073 -48128280 + AT_rich Low_complexity Low_complexity 1 22 0 2014 110 20 7 chr1 194536125 194536424 -48127929 + AluSq SINE Alu 1 303 -10 383 345 70 7 chr1 194538207 194538349 -48126004 - L2 LINE L2 -16 3256 3106 622 333 99 63 chr1 194538453 194538991 -48125362 - L2 LINE L2 -359 2955 2379 1765 191 3 0 chr1 194538991 194539285 -48125068 + AluJo SINE Alu 4 298 -14 622 333 99 63 chr1 194539285 194539520 -48124833 - L2 LINE L2 -935 2379 2154 604 283 117 5 chr1 194540610 194540833 -48123520 - MIR SINE MIR -3 259 12 965 123 0 0 chr1 194541014 194541175 -48123178 - AluJo/FRAM SINE Alu 0 312 152 657 158 0 26 chr1 194541176 194541290 -48123063 - AluSq/x SINE Alu -202 111 1 656 132 9 35 chr1 194541320 194541434 -48122919 + AluJb SINE Alu 141 251 -61 270 0 0 0 chr1 194541442 194541472 -48122881 + (TC)n Simple_repeat Simple_repeat 1 30 0 306 0 0 0 chr1 194541472 194541506 -48122847 + (TA)n Simple_repeat Simple_repeat 1 34 0 2435 67 3 0 chr1 194542090 194542387 -48121966 - AluY SINE Alu -13 298 1 240 309 80 74 chr1 194542402 194542564 -48121789 + L2 LINE L2 3107 3269 -3 1591 213 127 2 chr1 194544331 194544787 -48119566 + MLT1E2 LTR MaLR 111 623 -3 28 0 0 0 chr1 194547198 194547226 -48117127 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr1 194547995 194548025 -48116328 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr1 194548134 194548156 -48116197 + AT_rich Low_complexity Low_complexity 1 22 0 2181 137 0 0 chr1 194548546 194548846 -48115507 - AluSx SINE Alu -12 300 1 259 213 98 0 chr1 194548961 194549022 -48115331 - MIR SINE MIR -97 111 45 218 341 49 12 chr1 194549056 194549138 -48115215 - L2 LINE L2 -4 3309 3225 1781 156 27 13 chr1 194549653 194549954 -48114399 - AluJb SINE Alu -7 305 1 418 350 0 12 chr1 194550275 194550435 -48113918 + MER5B DNA MER1_type 1 158 -20 195 139 0 0 chr1 194551496 194551532 -48112821 + (T)n Simple_repeat Simple_repeat 1 36 0 239 423 6 6 chr1 194551671 194551827 -48112526 + L2 LINE L2 2550 2705 -609 * 354 317 66 44 chr1 194551826 194552009 -48112344 - L2 LINE L2 -27 3245 3059 283 279 0 0 chr1 194552583 194552669 -48111684 + L1ME4a LINE L1 4729 4814 -1332 3978 73 34 0 chr1 194552920 194553454 -48110899 - MER41A LTR ERV1 -2 552 1 26 0 0 0 chr1 194553477 194553503 -48110850 + AT_rich Low_complexity Low_complexity 1 26 0 926 27 0 0 chr1 194553583 194553693 -48110660 + L1PA3 LINE L1 6043 6152 -3 22 0 0 0 chr1 194553844 194553866 -48110487 + AT_rich Low_complexity Low_complexity 1 22 0 442 286 82 46 chr1 194553889 194554350 -48110003 + L1ME4a LINE L1 5640 6117 -4 1692 189 10 3 chr1 194555791 194556087 -48108266 - AluJo SINE Alu -14 298 1 192 77 0 0 chr1 194556297 194556323 -48108030 + (A)n Simple_repeat Simple_repeat 1 26 0 1790 142 33 4 chr1 194556458 194556732 -48107621 + AluJb SINE Alu 5 286 -26 229 333 48 0 chr1 194557620 194557704 -48106649 - MIR SINE MIR -73 135 48 21 0 0 0 chr1 194559468 194559489 -48104864 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr1 194560154 194560176 -48104177 + (GA)n Simple_repeat Simple_repeat 1 22 0 267 31 0 0 chr1 194560834 194560866 -48103487 + (CA)n Simple_repeat Simple_repeat 1 32 0 785 147 31 16 chr1 194563360 194563489 -48100864 - FLAM_A SINE Alu -2 131 1 1896 129 6 44 chr1 194564106 194564423 -48099930 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 194566871 194566892 -48097461 + AT_rich Low_complexity Low_complexity 1 21 0 1655 197 28 3 chr1 194566894 194567184 -48097169 + AluJb SINE Alu 1 297 -15 235 228 0 35 chr1 194568108 194568165 -48096188 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 246 130 109 0 chr1 194568276 194568322 -48096031 + MER5B DNA MER1_type 1 51 -127 223 270 79 63 chr1 194568379 194568505 -48095848 - MER5A DNA MER1_type -58 131 4 494 254 162 22 chr1 194569397 194569625 -48094728 - MIR SINE MIR -2 260 1 1267 163 4 57 chr1 194569909 194570173 -48094180 + MER58B DNA MER1_type 92 341 0 260 296 156 22 chr1 194571597 194571732 -48092621 + MIR SINE MIR 19 171 -91 485 318 232 20 chr1 194574550 194575106 -48089247 - L3 LINE CR1 -3 1574 901 2473 87 0 0 chr1 194575271 194575580 -48088773 + AluY SINE Alu 3 311 0 1673 160 4 4 chr1 194577694 194577962 -48086391 - AluJb SINE Alu -44 268 1 382 265 184 7 chr1 194578057 194578219 -48086134 + MIR3 SINE MIR 18 207 -1 513 0 0 0 chr1 194581490 194581547 -48082806 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr1 194585264 194585285 -48079068 + AT_rich Low_complexity Low_complexity 1 21 0 987 119 38 22 chr1 194585483 194585668 -48078685 - MER53 DNA DNA 0 189 2 234 0 0 0 chr1 194587373 194587399 -48076954 + (CA)n Simple_repeat Simple_repeat 2 27 0 591 15 0 0 chr1 194588940 194589008 -48075345 + (CA)n Simple_repeat Simple_repeat 2 69 0 259 349 102 26 chr1 194590003 194590570 -48073783 - L2 LINE L2 -167 3105 2490 323 315 216 4 chr1 194590581 194590835 -48073518 + L2 LINE L2 2963 3270 -2 315 249 23 136 chr1 194590840 194591017 -48073336 - L2 LINE L2 -833 2481 2325 333 329 19 0 chr1 194592177 194592335 -48072018 + MER117 DNA MER1_type 1 161 -36 403 230 26 14 chr1 194592373 194592505 -48071848 - MIR3 SINE MIR -50 158 22 320 332 30 0 chr1 194593695 194593839 -48070514 - MIR SINE MIR -71 137 34 217 250 0 0 chr1 194594092 194594136 -48070217 + L2 LINE L2 3229 3272 0 501 273 172 10 chr1 194594289 194594498 -48069855 - MIR SINE MIR -13 249 7 189 74 0 0 chr1 194597177 194597204 -48067149 + (TTC)n Simple_repeat Simple_repeat 2 28 0 225 0 0 0 chr1 194597490 194597515 -48066838 + (T)n Simple_repeat Simple_repeat 1 25 0 303 209 68 49 chr1 194598631 194598786 -48065567 + FRAM SINE Alu 41 98 -68 718 279 60 0 chr1 194598795 194599010 -48065343 - MIR SINE MIR -30 232 5 359 239 29 18 chr1 194599604 194599732 -48064621 - L1MC/D LINE L1 -299 5822 5706 3126 128 61 80 chr1 194600558 194600955 -48063398 - L1MB7 LINE L1 0 6184 5804 1938 144 17 0 chr1 194600955 194601247 -48063106 - AluJo SINE Alu -15 297 1 3126 128 61 80 chr1 194601247 194601551 -48062802 - L1MB7 LINE L1 -380 5804 5496 7125 26 6 0 chr1 194601551 194603010 -48061343 - L1PA4 LINE L1 -3 6152 4702 5864 21 0 0 chr1 194603010 194603715 -48060638 + L1PA4 LINE L1 4006 4710 -1436 1562 170 29 34 chr1 194603708 194604024 -48060329 - L1MB7 LINE L1 -673 5501 5198 * 2288 102 0 13 chr1 194604024 194604327 -48060026 - AluSq SINE Alu -14 299 1 1562 170 29 34 chr1 194604327 194604530 -48059823 - L1MB7 LINE L1 -976 5198 4996 1220 194 0 0 chr1 194604531 194604727 -48059626 - AluJb SINE Alu -21 291 96 3462 180 98 62 chr1 194604727 194605047 -48059306 - L1MB7 LINE L1 -1140 5006 4699 2029 141 3 0 chr1 194605047 194605338 -48059015 - AluJb SINE Alu -20 292 1 3462 180 98 62 chr1 194605338 194605740 -48058613 - L1MB7 LINE L1 -1447 4699 4313 2499 93 0 0 chr1 194605740 194606052 -48058301 - AluSx SINE Alu 0 312 1 3462 180 98 62 chr1 194606052 194606075 -48058278 - L1MB7 LINE L1 -1833 4313 4292 192 77 0 0 chr1 194606075 194606101 -48058252 + (TG)n Simple_repeat Simple_repeat 1 26 0 3462 180 98 62 chr1 194606101 194606333 -48058020 - L1MB7 LINE L1 -1854 4292 3992 284 267 141 22 chr1 194606539 194606674 -48057679 + MIR SINE MIR 106 256 -6 539 316 46 27 chr1 194607288 194607726 -48056627 - L2 LINE L2 -192 3080 2636 465 276 272 14 chr1 194608039 194608492 -48055861 + L2 LINE L2 2430 3000 -313 212 279 73 44 chr1 194608548 194608684 -48055669 + L2 LINE L2 1048 1187 -2127 324 200 0 0 chr1 194609138 194609208 -48055145 + (CA)n Simple_repeat Simple_repeat 1 70 0 231 353 48 16 chr1 194609210 194609397 -48054956 + L2 LINE L2 1804 1996 -1318 275 339 156 3 chr1 194609583 194609866 -48054487 + L2 LINE L2 2632 2957 -357 2274 120 113 18 chr1 194609884 194610275 -48054078 + MSTA LTR MaLR 1 428 0 388 245 85 11 chr1 194610479 194610573 -48053780 + MER58A DNA MER1_type 1 101 -6 1814 96 16 4 chr1 194610573 194610822 -48053531 - AluSx SINE Alu -9 303 52 291 28 0 0 chr1 194611066 194611102 -48053251 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 369 31 8 chr1 194611217 194611347 -48053006 + MIR SINE MIR 70 202 -60 334 252 97 10 chr1 194611622 194611725 -48052628 - MIR3 SINE MIR -86 122 11 449 235 27 86 chr1 194612165 194612352 -48052001 - MER5A DNA MER1_type -7 182 7 343 296 124 43 chr1 194612512 194612698 -48051655 - MIR SINE MIR -40 222 22 356 346 179 0 chr1 194613596 194613859 -48050494 + L1MC4a LINE L1 5830 6139 -1669 1753 165 0 66 chr1 194613953 194614286 -48050067 - AluJo SINE Alu -1 311 1 242 284 65 60 chr1 194615515 194615716 -48048637 - MIR3 SINE MIR -5 203 2 212 163 47 31 chr1 194616787 194616916 -48047437 + (TG)n Simple_repeat Simple_repeat 1 131 0 237 219 52 45 chr1 194617006 194617161 -48047192 + (GTGTG)n Simple_repeat Simple_repeat 2 157 0 * 290 113 61 39 chr1 194617047 194617284 -48047069 + (TG)n Simple_repeat Simple_repeat 1 242 0 242 83 64 58 chr1 194617334 194617490 -48046863 + (TG)n Simple_repeat Simple_repeat 1 157 0 405 75 64 40 chr1 194617509 194617682 -48046671 + (TG)n Simple_repeat Simple_repeat 1 177 0 483 49 49 76 chr1 194617746 194617931 -48046422 + (TG)n Simple_repeat Simple_repeat 1 180 0 417 49 49 56 chr1 194617943 194618087 -48046266 + (TG)n Simple_repeat Simple_repeat 1 143 0 1549 100 165 4 chr1 194619078 194619338 -48045015 - AluJo SINE Alu 0 302 1 356 321 95 2 chr1 194619415 194619587 -48044766 + MIR SINE MIR 6 188 -62 239 291 139 0 chr1 194620446 194620532 -48043821 - L2 LINE L2 -38 3234 3137 252 255 88 49 chr1 194620815 194620917 -48043436 - MIR SINE MIR -67 195 90 569 226 88 22 chr1 194621500 194621681 -48042672 + MIR SINE MIR 16 208 -54 185 323 77 0 chr1 194622194 194622259 -48042094 - MIR3 SINE MIR -46 162 93 896 169 0 2 chr1 194622292 194622475 -48041878 + AluJo SINE Alu 3 217 -95 251 263 24 0 chr1 194623723 194623809 -48040544 - MIR SINE MIR -65 143 48 561 351 9 17 chr1 194624351 194624582 -48039771 + L3 LINE CR1 1346 1574 -3 451 352 70 10 chr1 194625453 194625652 -48038701 + MIR SINE MIR 32 242 -20 193 229 16 49 chr1 194626300 194626361 -48037992 - MIR3 SINE MIR -4 204 146 210 270 95 0 chr1 194626582 194626656 -48037697 - MIR SINE MIR -6 256 176 653 234 75 42 chr1 194626662 194626876 -48037477 + MIR SINE MIR 8 228 -34 1953 78 92 0 chr1 194626908 194627179 -48037174 + AluSp SINE Alu 1 296 -17 3067 168 9 13 chr1 194627192 194627739 -48036614 + L1MB8 LINE L1 5633 6177 -1 279 350 70 6 chr1 194627747 194627904 -48036449 - MIR SINE MIR -78 184 18 198 325 33 53 chr1 194629170 194629321 -48035032 - MIR3 SINE MIR -60 148 1 761 256 26 30 chr1 194629420 194629650 -48034703 - MIR SINE MIR -32 230 2 1742 121 0 104 chr1 194629710 194630057 -48034296 + AluJb SINE Alu 1 311 -1 205 351 0 0 chr1 194630686 194630760 -48033593 - L3b LINE CR1 -191 1392 1319 3226 240 112 15 chr1 194631015 194632271 -48032082 - L1 LINE L1 -1998 4148 2654 966 139 35 60 chr1 194632734 194632935 -48031418 - MLT2A2 LTR ERVL 0 453 258 287 200 0 18 chr1 194633895 194633950 -48030403 - MIR SINE MIR -84 124 71 234 0 0 0 chr1 194634800 194634826 -48029527 + (CGGGGG)n Simple_repeat Simple_repeat 4 29 0 209 105 0 26 chr1 194634918 194634956 -48029397 + (TC)n Simple_repeat Simple_repeat 2 38 0 287 281 144 27 chr1 194637699 194637845 -48026508 + MIR3 SINE MIR 4 166 -42 270 365 10 0 chr1 194637855 194637951 -48026402 - L3b LINE CR1 -197 1386 1290 252 271 29 0 chr1 194638035 194638105 -48026248 + MIR3 SINE MIR 110 181 -27 558 252 14 7 chr1 194638592 194638731 -48025622 - MIR SINE MIR -111 151 12 213 39 0 0 chr1 194638838 194638864 -48025489 + (CACCC)n Simple_repeat Simple_repeat 5 30 0 448 254 46 8 chr1 194638888 194639018 -48025335 - MIR3 SINE MIR -7 201 67 333 0 0 0 chr1 194639336 194639373 -48024980 + (GA)n Simple_repeat Simple_repeat 2 38 0 184 276 58 35 chr1 194640292 194640379 -48023974 - MIR SINE MIR -62 146 58 233 176 294 39 chr1 194640732 194640834 -48023519 + L2 LINE L2 3168 3295 -18 462 315 56 6 chr1 194640851 194641013 -48023340 + MIR SINE MIR 54 223 -39 213 98 49 24 chr1 194642190 194642231 -48022122 + C-rich Low_complexity Low_complexity 5 46 0 894 254 68 4 chr1 194642329 194642565 -48021788 + MIR SINE MIR 6 256 -6 1911 128 21 3 chr1 194642566 194642855 -48021498 - AluSx SINE Alu -5 307 14 974 247 13 0 chr1 194643803 194644034 -48020319 - MIR SINE MIR -24 238 5 465 313 39 0 chr1 194644111 194644239 -48020114 - MIR SINE MIR -78 184 52 184 256 0 0 chr1 194644276 194644315 -48020038 - MIR SINE MIR -94 114 76 1179 117 0 22 chr1 194644822 194645002 -48019351 - AluSg/x SINE Alu -13 299 124 322 316 118 45 chr1 194645002 194645401 -48018952 - L2 LINE L2 -26 3246 2819 423 331 95 6 chr1 194645499 194645816 -48018537 - L2 LINE L2 -666 2648 2304 306 298 127 5 chr1 194645967 194646172 -48018181 + L2 LINE L2 2694 2923 -391 401 290 70 40 chr1 194646247 194646447 -48017906 + L2 LINE L2 3102 3307 -6 253 282 64 26 chr1 194646613 194646691 -48017662 - L2 LINE L2 -75 3197 3117 42 0 0 0 chr1 194646691 194646733 -48017620 + AT_rich Low_complexity Low_complexity 1 42 0 520 256 135 42 chr1 194647181 194647396 -48016957 - MIR SINE MIR 0 262 28 342 237 40 13 chr1 194648073 194648149 -48016204 + L1ME3A LINE L1 5852 5929 -241 2108 152 133 13 chr1 194648154 194648536 -48015817 + MSTA LTR MaLR 1 428 0 2248 221 92 0 chr1 194648565 194649054 -48015299 + MLT1G1 LTR MaLR 39 572 -23 2258 116 0 0 chr1 194649328 194649638 -48014715 + AluSx SINE Alu 1 310 -2 458 323 162 40 chr1 194650197 194651789 -48012564 + L2 LINE L2 1489 3264 -8 358 211 14 0 chr1 194651993 194652064 -48012289 + AluJ/FLAM SINE Alu 1 72 -230 187 200 29 0 chr1 194652841 194652876 -48011477 + L2 LINE L2 3251 3286 -27 301 307 30 0 chr1 194653171 194653272 -48011081 + MIR3 SINE MIR 14 117 -91 603 317 64 64 chr1 194653840 194654591 -48009762 - L2 LINE L2 0 3272 2203 322 284 96 27 chr1 194654879 194655064 -48009289 - MIR SINE MIR -40 222 19 195 184 0 0 chr1 194655479 194655517 -48008836 + (CA)n Simple_repeat Simple_repeat 2 39 0 469 309 40 25 chr1 194655799 194656000 -48008353 + MIR SINE MIR 3 206 -56 602 310 196 8 chr1 194656079 194656466 -48007887 - L3 LINE CR1 -34 1543 1084 738 242 0 0 chr1 194657380 194657529 -48006824 + MIR3 SINE MIR 57 205 -3 551 284 62 10 chr1 194659547 194659756 -48004597 + MIR SINE MIR 4 224 -38 227 330 0 43 chr1 194659812 194659927 -48004426 + MER5A DNA MER1_type 1 110 -79 33 25 0 0 chr1 194659974 194660014 -48004339 + AT_rich Low_complexity Low_complexity 1 40 0 808 143 0 0 chr1 194660014 194660133 -48004220 - FLAM_C SINE Alu -19 124 6 454 297 25 0 chr1 194660349 194660467 -48003886 - L2 LINE L2 0 3313 3193 247 276 79 0 chr1 194660471 194660547 -48003806 - L2 LINE L2 0 3313 3232 328 292 9 44 chr1 194661097 194661210 -48003143 - MIR3 SINE MIR -23 185 77 386 320 68 32 chr1 194661245 194661464 -48002889 - L2 LINE L2 0 3272 3046 285 123 18 0 chr1 194661632 194661689 -48002664 + L1MA9 LINE L1 6216 6273 -39 2277 246 99 26 chr1 194661760 194661999 -48002354 - L1ME3A LINE L1 -18 6152 5932 1729 159 3 17 chr1 194661999 194662295 -48002058 - AluJo SINE Alu -12 300 9 2277 246 99 26 chr1 194662295 194662871 -48001482 - L1ME3A LINE L1 -238 5932 5277 340 194 23 0 chr1 194713973 194714061 -47950292 + MER41D-int LTR ERV1 5858 5930 -16 3053 170 21 27 chr1 194714071 194714136 -47950217 + MER41D LTR ERV1 1 65 -492 2584 60 0 0 chr1 194714136 194714437 -47949916 + AluY SINE Alu 1 301 -10 3053 170 21 27 chr1 194714437 194714931 -47949422 + MER41D LTR ERV1 65 557 0 310 208 0 0 chr1 194716419 194716472 -47947881 + L2 LINE L2 3247 3299 -14 284 232 29 0 chr1 194717489 194717558 -47946795 + Tigger2 DNA MER2_type 2 72 -2646 * 1972 127 163 8 chr1 194717545 194717931 -47946422 + Tigger2 DNA MER2_type 2273 2718 0 548 185 29 14 chr1 194718538 194718684 -47945669 - MLT1B LTR MaLR -83 307 130 2339 112 0 0 chr1 194718698 194719010 -47945343 - AluSx SINE Alu 0 312 1 2274 95 7 0 chr1 194720278 194720573 -47943780 + AluSp SINE Alu 1 297 -16 2339 83 20 3 chr1 194721016 194721316 -47943037 + AluSx SINE Alu 1 305 -7 933 210 122 13 chr1 194721320 194721549 -47942804 + MIR SINE MIR 8 261 -1 491 252 95 28 chr1 194722143 194722474 -47941879 - MLT1G1 LTR MaLR 0 595 191 1687 160 32 3 chr1 194722477 194722759 -47941594 + AluSx SINE Alu 1 290 -22 1676 185 122 8 chr1 194722800 194723152 -47941201 + MLT1C LTR MaLR 15 406 -61 1880 94 57 17 chr1 194723155 194723452 -47940901 - AluY SINE Alu -2 309 1 1377 173 33 4 chr1 194723957 194724228 -47940125 + AluJb SINE Alu 1 279 -33 397 228 99 47 chr1 194725050 194725221 -47939132 - L1ME2 LINE L1 -2 6162 5983 1350 157 164 19 chr1 194725239 194725501 -47938852 + AluJb SINE Alu 3 302 0 279 245 245 20 chr1 194725677 194725775 -47938578 - MER5A DNA MER1_type -44 145 26 1013 87 0 0 chr1 194726691 194726829 -47937524 - AluSp/q SINE Alu -2 311 174 2051 117 3 0 chr1 194728015 194728314 -47936039 + AluSx SINE Alu 1 300 -12 240 59 0 0 chr1 194729358 194729392 -47934961 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2283 69 0 3 chr1 194729392 194729680 -47934673 - AluSq SINE Alu -25 288 2 2099 128 0 0 chr1 194730575 194730880 -47933473 + AluSx SINE Alu 1 305 -7 2017 121 3 3 chr1 194730881 194731186 -47933167 + AluSx SINE Alu 1 305 -7 760 185 14 20 chr1 194731440 194731586 -47932767 + FAM SINE Alu 18 162 -23 2242 107 0 0 chr1 194732753 194733063 -47931290 + AluSx SINE Alu 1 310 -2 669 242 19 6 chr1 194733130 194733291 -47931062 + MLT1A1 LTR MaLR 199 361 -4 996 205 40 32 chr1 194734042 194734320 -47930033 - AluSg1 SINE Alu -19 290 11 286 264 22 11 chr1 194734470 194734561 -47929792 - AluJ/FLAM SINE Alu -210 92 1 361 297 84 64 chr1 194734575 194734824 -47929529 + L2 LINE L2 2809 3062 -210 283 143 0 0 chr1 194734948 194734990 -47929363 + L2 LINE L2 3264 3305 -8 241 307 97 45 chr1 194734988 194735164 -47929189 - L2 LINE L2 -1287 2027 1843 * 1791 162 0 10 chr1 194735220 194735523 -47928830 - AluJo SINE Alu -12 300 1 2300 64 3 13 chr1 194738093 194738391 -47925962 - AluY SINE Alu -16 295 1 1196 176 10 81 chr1 194738457 194738690 -47925663 - AluJb SINE Alu -3 309 100 1790 136 0 66 chr1 194738690 194739022 -47925331 - AluSx SINE Alu -1 311 2 1196 176 10 81 chr1 194739022 194739084 -47925269 - AluJb SINE Alu -212 100 35 829 126 0 24 chr1 194739499 194739626 -47924727 + FLAM_C SINE Alu 13 136 -7 21 0 0 0 chr1 194739686 194739707 -47924646 + AT_rich Low_complexity Low_complexity 1 21 0 406 241 41 55 chr1 194739985 194740130 -47924223 + AluJb SINE Alu 154 296 -16 318 231 172 30 chr1 194740144 194740278 -47924075 - L1ME3 LINE L1 -21 6141 5989 * 724 204 196 18 chr1 194740275 194740555 -47923798 - L1M4 LINE L1 -1277 4869 4540 397 226 97 0 chr1 194740555 194740648 -47923705 - MER58 DNA MER1_type -1 2419 2318 313 262 0 93 chr1 194740645 194740669 -47923684 - MER58 DNA MER1_type -2321 99 74 * 1655 167 10 7 chr1 194740669 194740969 -47923384 + AluJb SINE Alu 1 301 -11 313 262 0 93 chr1 194740969 194741051 -47923302 - MER58 DNA MER1_type -2346 74 3 1137 152 30 0 chr1 194741201 194741398 -47922955 - AluJo SINE Alu -26 286 84 2050 98 18 0 chr1 194741407 194741692 -47922661 - AluSg SINE Alu -16 294 5 307 225 62 0 chr1 194742392 194742472 -47921881 - L1ME LINE L1 -5983 87 3 246 221 126 0 chr1 194742977 194743072 -47921281 + L1M2 LINE L1 5342 5448 -852 1212 178 0 16 chr1 194743097 194743339 -47921014 - AluJo SINE Alu 0 312 75 2400 57 0 0 chr1 194745338 194745634 -47918719 - AluY SINE Alu -15 296 1 208 348 104 9 chr1 194745719 194745834 -47918519 + MIR SINE MIR 20 145 -117 254 325 77 17 chr1 194745934 194746051 -47918302 - MIR SINE MIR -119 143 20 2184 104 3 0 chr1 194746399 194746707 -47917646 - AluSg SINE Alu -1 309 1 371 294 126 74 chr1 194746709 194747114 -47917239 - L2 LINE L2 -1 3271 2846 238 291 116 12 chr1 194747198 194747284 -47917069 - MIR SINE MIR -42 220 126 460 263 105 23 chr1 194747897 194748068 -47916285 - MIR SINE MIR -54 208 24 201 137 96 68 chr1 194748090 194748163 -47916190 - L2 LINE L2 -187 3085 3011 215 95 143 0 chr1 194748173 194748215 -47916138 + L2 LINE L2 3223 3270 -2 306 98 0 0 chr1 194748261 194748312 -47916041 + (GGGGA)n Simple_repeat Simple_repeat 4 54 0 598 256 143 14 chr1 194749453 194749676 -47914677 - MIR SINE MIR -4 258 7 2183 111 0 9 chr1 194750096 194750412 -47913941 - AluSq SINE Alu 0 313 1 821 149 7 21 chr1 194751332 194751473 -47912880 - FLAM_C SINE Alu -3 140 2 573 265 82 6 chr1 194751502 194751672 -47912681 + Charlie8 DNA MER1_type 72 254 -2163 2146 108 3 0 chr1 194751757 194752052 -47912301 - AluSp SINE Alu -17 296 1 228 232 36 18 chr1 194752061 194752117 -47912236 + Charlie8 DNA MER1_type 2343 2399 -18 191 242 0 0 chr1 194752197 194752230 -47912123 - L2 LINE L2 -19 3294 3262 1802 165 0 7 chr1 194752250 194752559 -47911794 - AluJb SINE Alu -5 307 1 250 413 52 0 chr1 194752567 194752739 -47911614 + L2 LINE L2 2624 2804 -510 1009 173 0 0 chr1 194752739 194752901 -47911452 - FRAM SINE Alu -4 162 1 3543 159 42 1 chr1 194752908 194753575 -47910778 - L1MB7 LINE L1 0 6184 5491 932 130 0 0 chr1 194753601 194753732 -47910621 + AluJo/FLAM SINE Alu 3 133 -169 2104 82 65 0 chr1 194753735 194754029 -47910324 + AluSp SINE Alu 1 313 0 1991 109 0 4 chr1 194754063 194754338 -47910015 + AluSg SINE Alu 30 303 -7 787 106 9 0 chr1 194755409 194755522 -47908831 - MER41D LTR ERV1 -442 115 2 2190 93 0 16 chr1 194755848 194756159 -47908194 - AluSx SINE Alu 0 312 7 1101 145 6 0 chr1 194756828 194757007 -47907346 + AluSg/x SINE Alu 131 310 0 868 222 24 0 chr1 194757160 194757327 -47907026 - AluSg/x SINE Alu -6 304 134 1817 101 4 0 chr1 194758845 194759092 -47905261 - AluSp SINE Alu -6 307 60 208 311 101 76 chr1 194759465 194759584 -47904769 - L2 LINE L2 -9 3304 3183 2187 67 42 0 chr1 194759602 194759887 -47904466 - AluY SINE Alu -14 297 1 764 135 0 71 chr1 194760025 194760166 -47904187 + FLAM_C SINE Alu 3 133 0 2054 107 0 21 chr1 194760301 194760591 -47903762 - MER4A LTR ERV1 -26 638 355 856 71 9 0 chr1 194760629 194760741 -47903612 - MER4A LTR ERV1 -307 357 245 740 110 55 0 chr1 194760883 194761010 -47903343 - AluSq/x SINE Alu -174 139 6 880 308 24 27 chr1 194761164 194761538 -47902815 - MER66-int LTR ERV1 -391 6285 5913 1161 168 6 100 chr1 194761780 194762031 -47902322 - MER66-int LTR ERV1 -1485 6271 5998 2086 124 10 0 chr1 194762031 194762338 -47902015 - AluSx SINE Alu -2 310 1 1161 168 6 100 chr1 194762338 194762371 -47901982 - MER66-int LTR ERV1 -1758 5998 4608 580 152 18 45 chr1 194762372 194762484 -47901869 - MER49 LTR ERV1 -200 723 615 * 1074 175 20 83 chr1 194762476 194762677 -47901676 - MER4D LTR ERV1 -632 240 94 2251 83 0 0 chr1 194762677 194762967 -47901386 - AluY SINE Alu -16 295 6 1074 175 20 83 chr1 194762967 194763043 -47901310 - MER4D LTR ERV1 -778 94 15 2239 90 3 3 chr1 194763245 194763546 -47900807 - AluSc SINE Alu -8 301 1 1766 151 13 3 chr1 194763547 194763845 -47900508 - AluJo SINE Alu -11 301 1 21 36 0 0 chr1 194764374 194764402 -47899951 + AT_rich Low_complexity Low_complexity 1 28 0 215 224 0 0 chr1 194764811 194764869 -47899484 + T-rich Low_complexity Low_complexity 2 59 0 194 337 23 12 chr1 194765389 194765475 -47898878 - MIR SINE MIR -1 261 175 1645 104 5 0 chr1 194766084 194766306 -47898047 - AluSg SINE Alu -87 223 1 1207 229 4 11 chr1 194767185 194767464 -47896889 + AluJo SINE Alu 1 277 -35 6172 75 15 48 chr1 194767687 194768341 -47896012 + L1PA13 LINE L1 4770 5444 -719 2420 78 0 0 chr1 194768341 194768650 -47895703 + AluSg SINE Alu 1 309 -1 6172 75 15 48 chr1 194768650 194769409 -47894944 + L1PA13 LINE L1 5444 6162 -1 272 309 31 21 chr1 194771465 194771562 -47892791 + MIR3 SINE MIR 68 165 -43 460 216 131 17 chr1 194771615 194771791 -47892562 + L1ME LINE L1 4164 4359 -1787 380 324 31 6 chr1 194772063 194772302 -47892051 + GA-rich Low_complexity Low_complexity 1 244 0 291 266 46 9 chr1 194772358 194772467 -47891886 + L1ME LINE L1 4290 4402 -1744 3179 211 27 19 chr1 194772473 194773252 -47891101 + L1ME LINE L1 4502 5286 -860 928 114 0 0 chr1 194773282 194773405 -47890948 + FLAM_C SINE Alu 1 123 -20 271 154 266 105 chr1 194773415 194773558 -47890795 + L1ME LINE L1 5317 5482 -684 1815 148 34 17 chr1 194773977 194774275 -47890078 + AluJb SINE Alu 1 303 -9 213 154 77 0 chr1 194774896 194774935 -47889418 - MER5C DNA MER1_type -249 75 34 352 108 23 0 chr1 194774975 194775035 -47889318 - AluSp/q SINE Alu -13 290 239 1558 125 19 0 chr1 194775146 194775362 -47888991 - AluSq SINE Alu -93 220 1 22 0 0 0 chr1 194776060 194776082 -47888271 + AT_rich Low_complexity Low_complexity 1 22 0 542 234 13 52 chr1 194776127 194776281 -47888072 + MER5A DNA MER1_type 15 162 -27 195 314 41 66 chr1 194776318 194776439 -47887914 + L2 LINE L2 2953 3070 -202 2121 163 12 0 chr1 194776978 194777321 -47887032 + MER7A DNA MER2_type 2 346 0 466 266 95 28 chr1 194778263 194778515 -47885838 + L1ME4a LINE L1 5658 5926 -195 1961 119 0 96 chr1 194778989 194779334 -47885019 - AluSx SINE Alu 0 312 1 1134 159 0 0 chr1 194779353 194779529 -47884824 - AluSg/x SINE Alu -3 307 132 2337 98 7 0 chr1 194779529 194779826 -47884527 - AluSx SINE Alu -13 299 1 206 275 38 38 chr1 194780555 194780635 -47883718 - MIR SINE MIR -56 206 127 293 73 24 0 chr1 194780638 194780679 -47883674 + Alu SINE Alu 1 42 -259 22 0 0 0 chr1 194781919 194781941 -47882412 + GC_rich Low_complexity Low_complexity 1 22 0 442 239 131 8 chr1 194784215 194784345 -47880008 - MIR SINE MIR -9 199 54 2294 96 3 3 chr1 194784584 194784877 -47879476 + AluSc SINE Alu 1 293 -16 1142 130 0 0 chr1 194784877 194785031 -47879322 + AluJo/FRAM SINE Alu 135 288 -24 1478 103 10 0 chr1 194785043 194785246 -47879107 + AluY SINE Alu 1 205 -106 230 212 0 71 chr1 194785472 194785557 -47878796 + T-rich Low_complexity Low_complexity 1 79 0 250 283 132 9 chr1 194785606 194785712 -47878641 - MER5A DNA MER1_type 0 189 71 2308 75 0 30 chr1 194786010 194786315 -47878038 + AluSg SINE Alu 1 296 -14 234 229 66 74 chr1 194786393 194786515 -47877838 + MIR SINE MIR 23 143 -65 185 305 158 0 chr1 194786683 194786778 -47877575 + MIR SINE MIR 13 122 -140 1262 69 109 35 chr1 194788024 194788226 -47876127 - MER44D DNA MER2_type -2 603 387 2090 99 17 14 chr1 194788227 194788519 -47875834 + AluSq SINE Alu 1 293 -20 1285 49 0 12 chr1 194788619 194788783 -47875570 + L1PA5 LINE L1 5993 6154 0 742 168 74 7 chr1 194788787 194788936 -47875417 + L1MB8 LINE L1 6008 6166 -12 740 196 72 7 chr1 194789414 194789567 -47874786 + AluSg/x SINE Alu 137 299 -13 801 136 8 0 chr1 194789707 194789832 -47874521 + AluSg/x SINE Alu 178 303 -9 566 99 25 0 chr1 194789838 194789919 -47874434 - MER44D DNA MER2_type -203 406 54 2198 122 3 0 chr1 194789968 194790262 -47874091 + AluSx SINE Alu 1 295 -17 180 77 0 0 chr1 194792075 194792101 -47872252 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 256 346 40 0 chr1 194792506 194792607 -47871746 + AluSg SINE Alu 1 105 -195 195 152 0 0 chr1 194792755 194792801 -47871552 + A-rich Low_complexity Low_complexity 1 46 0 319 192 26 0 chr1 194792805 194792883 -47871470 + MER4-int LTR ERV1 3884 3963 -2635 2396 79 7 7 chr1 194792893 194793198 -47871155 - AluSx SINE Alu -7 305 1 663 118 39 0 chr1 194793198 194793325 -47871028 - LOR1-int LTR ERV1 -6185 1935 1804 2287 112 3 0 chr1 194793326 194793620 -47870733 - AluSp SINE Alu -18 295 1 2208 107 3 0 chr1 194793620 194793917 -47870436 - AluSx SINE Alu -13 299 1 2267 86 10 0 chr1 194793927 194794217 -47870136 - AluSp SINE Alu -20 293 1 2297 98 19 0 chr1 194794237 194794544 -47869809 - AluSq SINE Alu 0 313 1 183 250 62 21 chr1 194794726 194794822 -47869531 - MIR SINE MIR -42 220 121 2179 108 3 7 chr1 194795268 194795565 -47868788 - AluSq SINE Alu -17 296 1 810 174 79 16 chr1 194796190 194796380 -47867973 + AluSg/x SINE Alu 94 295 -17 1020 261 78 127 chr1 194796381 194796550 -47867803 + L2 LINE L2 2033 2209 -1105 255 61 0 0 chr1 194796550 194796583 -47867770 + (CA)n Simple_repeat Simple_repeat 2 34 0 1020 261 78 127 chr1 194796583 194796887 -47867466 + L2 LINE L2 2209 2526 -788 828 136 8 0 chr1 194796887 194797012 -47867341 - FLAM_C SINE Alu -7 126 1 1020 261 78 127 chr1 194797012 194797349 -47867004 + L2 LINE L2 2526 2878 -436 2523 63 0 3 chr1 194797349 194797651 -47866702 - AluY SINE Alu -10 301 1 2179 113 0 3 chr1 194797655 194797948 -47866405 - AluSx SINE Alu -16 296 5 1020 261 78 127 chr1 194797948 194798098 -47866255 + L2 LINE L2 2881 2953 -361 27 29 0 0 chr1 194798100 194798134 -47866219 + AT_rich Low_complexity Low_complexity 1 34 0 489 289 50 70 chr1 194798158 194798330 -47866023 + L2 LINE L2 2954 3128 -185 2299 120 0 0 chr1 194798330 194798639 -47865714 - AluSx SINE Alu -3 309 1 489 289 50 70 chr1 194798639 194798823 -47865530 + L2 LINE L2 3128 3303 -10 189 229 0 0 chr1 194798875 194798910 -47865443 - L2 LINE L2 -43 3229 3195 563 242 25 19 chr1 194798946 194799107 -47865246 + MIR SINE MIR 2 163 -99 27 0 0 0 chr1 194799127 194799154 -47865199 + AT_rich Low_complexity Low_complexity 1 27 0 206 204 23 0 chr1 194799251 194799295 -47865058 + MIR SINE MIR 215 259 -3 1110 190 9 27 chr1 194799724 194799945 -47864408 + AluJo SINE Alu 85 301 -11 315 288 33 0 chr1 194799945 194800047 -47864306 - L1MA10 LINE L1 -51 6258 6012 488 269 41 41 chr1 194800069 194800240 -47864113 + L2 LINE L2 3142 3312 -1 719 139 0 17 chr1 194800567 194800682 -47863671 - FLAM_A SINE Alu -8 134 22 199 160 140 0 chr1 194800815 194800865 -47863488 + MIR SINE MIR 36 92 -116 702 236 124 25 chr1 194801756 194802112 -47862241 + MLT1H1 LTR MaLR 24 416 -174 2315 89 6 13 chr1 194802175 194802489 -47861864 + AluSx SINE Alu 1 312 0 698 138 28 0 chr1 194802499 194802608 -47861745 - MER20 DNA MER1_type -78 141 30 357 245 20 29 chr1 194803754 194803856 -47860497 - L1ME3A LINE L1 -191 5979 5879 907 164 25 109 chr1 194803882 194804157 -47860196 + L1ME3A LINE L1 5911 6162 -8 1443 163 112 34 chr1 194805201 194805496 -47858857 - MER1B DNA MER1_type -15 324 7 200 268 54 0 chr1 194806214 194806270 -47858083 + L2 LINE L2 3201 3259 -13 830 129 13 71 chr1 194806815 194806970 -47857383 + AluJb SINE Alu 156 301 -11 257 233 100 44 chr1 194807096 194807276 -47857077 + L1ME4a LINE L1 5932 6121 0 1469 201 0 11 chr1 194807432 194807715 -47856638 + AluJb SINE Alu 1 280 -32 221 0 35 0 chr1 194807715 194807744 -47856609 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 901 201 25 0 chr1 194808283 194808442 -47855911 + AluJb SINE Alu 137 299 -13 1529 155 16 23 chr1 194808560 194808818 -47855535 + AluJo SINE Alu 1 256 -56 1772 136 178 9 chr1 194808921 194809253 -47855100 + MLT1B LTR MaLR 3 390 0 253 152 45 0 chr1 194809586 194809652 -47854701 + CT-rich Low_complexity Low_complexity 4 72 0 1345 188 12 12 chr1 194809827 194810083 -47854270 + AluSq SINE Alu 41 296 -17 24 32 0 0 chr1 194810299 194810330 -47854023 + AT_rich Low_complexity Low_complexity 1 31 0 974 189 25 51 chr1 194811104 194811300 -47853053 + AluJo SINE Alu 85 275 -37 2229 97 3 7 chr1 194811316 194811615 -47852738 + AluY SINE Alu 1 298 -13 21 36 0 0 chr1 194812712 194812740 -47851613 + AT_rich Low_complexity Low_complexity 1 28 0 1353 141 0 82 chr1 194813704 194814044 -47850309 + AluSx SINE Alu 1 312 0 2252 106 0 3 chr1 194814347 194814364 -47849989 - AluSc SINE Alu -9 300 284 234 116 0 0 chr1 194814364 194814407 -47849946 + (TTAA)n Simple_repeat Simple_repeat 3 45 0 2252 106 0 3 chr1 194814407 194814690 -47849663 - AluSc SINE Alu -25 284 1 2213 84 3 27 chr1 194815504 194815802 -47848551 - AluSx SINE Alu -17 295 5 618 109 20 20 chr1 194816439 194816540 -47847813 + FLAM_C SINE Alu 30 130 -13 22 0 0 0 chr1 194816567 194816589 -47847764 + AT_rich Low_complexity Low_complexity 1 22 0 1328 165 90 45 chr1 194816589 194816856 -47847497 - AluJo SINE Alu -33 279 1 180 0 0 0 chr1 194817365 194817385 -47846968 + (A)n Simple_repeat Simple_repeat 1 20 0 1246 227 14 20 chr1 194817513 194817808 -47846545 - AluJb SINE Alu -19 293 1 2169 116 3 0 chr1 194817903 194818197 -47846156 + AluSx SINE Alu 1 295 -17 715 175 0 35 chr1 194818415 194818558 -47845795 + L1MB3 LINE L1 6031 6168 -15 183 129 0 0 chr1 194818616 194818647 -47845706 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2475 70 13 0 chr1 194819056 194819355 -47844998 - AluSp SINE Alu -10 303 1 2473 62 10 3 chr1 194819369 194819675 -47844678 - AluY SINE Alu -3 308 1 307 234 0 16 chr1 194819676 194819740 -47844613 + MLT1C LTR MaLR 403 465 -2 620 196 111 7 chr1 194820033 194820186 -47844167 - MER5A DNA MER1_type -14 175 7 238 214 0 18 chr1 194820200 194820256 -47844097 + MER5B DNA MER1_type 1 55 -123 483 176 264 0 chr1 194820257 194820382 -47843971 - Tigger5 DNA MER2_type 0 2323 2166 1873 149 7 10 chr1 194820386 194820675 -47843678 + AluJb SINE Alu 6 293 -19 240 204 0 0 chr1 194820697 194820746 -47843607 - MER5B DNA MER1_type -129 49 1 2419 83 3 0 chr1 194820873 194821173 -47843180 + AluSp SINE Alu 1 301 -12 2186 128 3 0 chr1 194821232 194821536 -47842817 + AluSq SINE Alu 1 305 -8 1564 103 9 0 chr1 194821571 194821784 -47842569 + AluY SINE Alu 1 215 -96 1375 57 129 29 chr1 194822136 194822345 -47842008 - MER30 DNA MER1_type 0 230 1 2269 92 0 20 chr1 194822387 194822692 -47841661 - AluSx SINE Alu -13 299 1 202 356 63 11 chr1 194824734 194824908 -47839445 - L2 LINE L2 -411 2903 2721 742 162 0 63 chr1 194827584 194827726 -47836627 + FLAM_A SINE Alu 1 133 0 340 146 136 3 chr1 194827783 194827989 -47836364 + AluJo SINE Alu 1 298 -4 2152 108 0 7 chr1 194829998 194830285 -47834068 + AluJb SINE Alu 1 285 -27 1947 142 10 17 chr1 194831084 194831379 -47832974 - AluJo SINE Alu -19 293 1 2251 93 40 0 chr1 194832111 194832411 -47831942 - AluSp SINE Alu 0 313 2 826 162 0 22 chr1 194832622 194832758 -47831595 - FLAM_C SINE Alu 0 133 1 770 161 0 0 chr1 194832971 194833089 -47831264 - FLAM_A SINE Alu -13 120 3 1492 198 118 83 chr1 194833292 194833921 -47830432 + L1MC5 LINE L1 7179 7837 -124 2024 132 7 0 chr1 194833921 194834209 -47830144 + AluSq SINE Alu 3 292 -21 1492 198 118 83 chr1 194834209 194834290 -47830063 + L1MC5 LINE L1 7837 7914 -47 2067 139 20 0 chr1 194834435 194834729 -47829624 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 194834729 194834751 -47829602 + AT_rich Low_complexity Low_complexity 1 22 0 1429 208 3 21 chr1 194835150 194835467 -47828886 + AluJb SINE Alu 1 312 0 2287 112 0 6 chr1 194835470 194835784 -47828569 + AluSx SINE Alu 1 312 0 1172 124 12 6 chr1 194835784 194835953 -47828400 + AluSg/x SINE Alu 134 303 -9 422 193 0 24 chr1 194836153 194836236 -47828117 - AluJ/FRAM SINE Alu -13 299 219 881 159 0 68 chr1 194836345 194836508 -47827845 - AluJo SINE Alu -155 157 6 378 184 99 59 chr1 194836885 194837037 -47827316 - L1ME4a LINE L1 0 6121 5964 2231 115 3 13 chr1 194837061 194837374 -47826979 + AluSg SINE Alu 1 310 0 1621 177 20 27 chr1 194837619 194837919 -47826434 + AluJb SINE Alu 1 298 -14 1070 158 6 0 chr1 194837932 194838097 -47826256 + AluJb SINE Alu 143 308 -4 228 307 98 7 chr1 194838132 194838285 -47826068 - L1ME LINE L1 -565 5556 5390 836 113 6 88 chr1 194838366 194838525 -47825828 - AluJb SINE Alu -7 305 160 2071 133 10 0 chr1 194838528 194838829 -47825524 - AluSg SINE Alu -6 304 1 477 34 0 0 chr1 194838888 194838947 -47825406 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2025 101 56 0 chr1 194838947 194839215 -47825138 - AluSp SINE Alu -30 283 1 1233 174 8 37 chr1 194840483 194840725 -47823628 - MER46A DNA MER2_type -1 235 1 2221 76 0 49 chr1 194840726 194841030 -47823323 - AluY SINE Alu -22 289 1 30 0 0 0 chr1 194841039 194841069 -47823284 + AT_rich Low_complexity Low_complexity 1 30 0 393 157 24 60 chr1 194841249 194841332 -47823021 - AluJ/FRAM SINE Alu 0 302 223 644 302 60 0 chr1 194841422 194841654 -47822699 + MIR SINE MIR 15 260 -2 209 224 17 0 chr1 194841837 194841895 -47822458 + L2 LINE L2 2915 2973 -299 277 287 6 35 chr1 194841944 194842105 -47822248 + MIR SINE MIR 29 233 -29 1246 136 14 41 chr1 194842122 194842343 -47822010 - AluJo SINE Alu -12 300 86 2678 37 0 0 chr1 194842471 194842769 -47821584 + AluY SINE Alu 1 298 -13 361 242 94 39 chr1 194842777 194842905 -47821448 + L2 LINE L2 3136 3270 -2 314 318 39 19 chr1 194846027 194846181 -47818172 + MIR SINE MIR 13 169 -93 1004 107 0 0 chr1 194847589 194847729 -47816624 - AluSp/q SINE Alu -6 307 168 271 176 0 83 chr1 194849224 194849332 -47815021 + (CGGGG)n Simple_repeat Simple_repeat 3 101 0 2081 103 3 17 chr1 194849596 194849898 -47814455 - AluSx SINE Alu -14 298 1 372 244 51 153 chr1 194850348 194850623 -47813730 + MIR SINE MIR 16 262 0 1609 137 29 0 chr1 194851697 194851938 -47812415 + AluJb SINE Alu 14 261 -51 575 266 31 58 chr1 194852229 194852455 -47811898 - MIR SINE MIR -3 259 40 2468 81 0 0 chr1 194852491 194852786 -47811567 - AluSg SINE Alu -15 295 1 1343 169 38 28 chr1 194852790 194853110 -47811243 - L1MC5 LINE L1 -36 7925 7603 2526 73 0 0 chr1 194853113 194853414 -47810939 - AluY SINE Alu -10 301 1 2326 83 0 38 chr1 194853414 194853728 -47810625 - AluSg SINE Alu -8 302 1 3515 217 30 37 chr1 194853749 194854457 -47809896 - L1ME1 LINE L1 -15 6151 5439 1886 152 7 10 chr1 194854457 194854760 -47809593 - AluJb SINE Alu -4 308 7 3515 217 30 37 chr1 194854760 194854918 -47809435 - L1ME1 LINE L1 -727 5439 5281 2298 109 0 3 chr1 194854918 194855220 -47809133 - AluSq SINE Alu -12 301 1 3515 217 30 37 chr1 194855220 194855366 -47808987 - L1ME1 LINE L1 -885 5281 5135 1658 105 0 0 chr1 194855366 194855576 -47808777 - AluSg/x SINE Alu -20 292 83 3515 217 30 37 chr1 194855576 194856313 -47808040 - L1ME1 LINE L1 -1031 5135 4409 1353 236 38 3 chr1 194856533 194856877 -47807476 + L2 LINE L2 2393 2748 -566 289 231 67 48 chr1 194856890 194856994 -47807359 + L2 LINE L2 3162 3267 -46 714 224 50 97 chr1 194857162 194857421 -47806932 - LTR40a LTR ERVL -117 402 156 552 193 140 0 chr1 194857486 194857600 -47806753 - LTR40a LTR ERVL -311 208 79 353 299 156 23 chr1 194857635 194857710 -47806643 + HAL1 LINE L1 2099 2163 -344 2332 125 0 0 chr1 194857710 194858022 -47806331 + AluSx SINE Alu 1 312 0 353 299 156 23 chr1 194858022 194858247 -47806106 + HAL1 LINE L1 2163 2439 -68 606 131 0 0 chr1 194858258 194858357 -47805996 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 642 169 0 0 chr1 194858462 194858580 -47805773 + CT-rich Low_complexity Low_complexity 2 119 0 2219 99 30 0 chr1 194858580 194858884 -47805469 - AluSp SINE Alu 0 313 1 672 248 76 0 chr1 194858934 194859144 -47805209 + L2 LINE L2 1920 2145 -1169 323 289 0 0 chr1 194859184 194859274 -47805079 - L2 LINE L2 -1399 1915 1826 1171 174 42 24 chr1 194859628 194859720 -47804633 - MER20 DNA MER1_type 0 219 130 4261 96 6 100 chr1 194859720 194860355 -47803998 - MER4A LTR ERV1 0 664 106 2216 117 7 3 chr1 194860355 194860663 -47803690 + AluSq SINE Alu 1 309 -4 4261 96 6 100 chr1 194860663 194860760 -47803593 - MER4A LTR ERV1 -558 106 1 1171 174 42 24 chr1 194860760 194860880 -47803473 - MER20 DNA MER1_type -89 130 3 465 285 125 5 chr1 194861505 194861705 -47802648 - MIR SINE MIR -21 241 18 1864 250 68 31 chr1 194861960 194862596 -47801757 + L2 LINE L2 953 1611 -1703 3146 149 17 11 chr1 194862644 194863169 -47801184 - Tigger1 DNA MER2_type -353 2065 1538 312 98 0 0 chr1 194863559 194863610 -47800743 + AluSp/q SINE Alu 253 303 0 726 185 39 22 chr1 194863622 194863800 -47800553 + L1MB2 LINE L1 5986 6166 -5 2413 88 0 0 chr1 194863800 194864095 -47800258 - AluSx SINE Alu -17 295 1 388 194 78 10 chr1 194864338 194864441 -47799912 + L1ME4a LINE L1 6008 6117 -4 2101 135 13 0 chr1 194864453 194864756 -47799597 + AluSx SINE Alu 1 307 -5 1677 164 0 21 chr1 194864777 194865058 -47799295 + AluJo SINE Alu 21 295 -17 370 309 131 6 chr1 194865291 194865466 -47798887 - MIR SINE MIR -19 243 47 641 262 63 17 chr1 194865479 194865716 -47798637 - MIR SINE MIR -1 261 14 222 340 54 20 chr1 194865877 194866024 -47798329 - MIR SINE MIR -27 235 84 600 241 15 15 chr1 194866885 194867022 -47797331 + LTR33 LTR ERVL 1 137 -384 674 238 53 39 chr1 194867081 194867287 -47797066 + LTR33 LTR ERVL 313 521 0 692 232 80 22 chr1 194867367 194867591 -47796762 - MIR SINE MIR -16 246 10 228 200 77 15 chr1 194867829 194867894 -47796459 - MER113 DNA MER1_type? -451 70 2 207 162 0 0 chr1 194868703 194868740 -47795613 + (TA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chr1 194868740 194868763 -47795590 + (TC)n Simple_repeat Simple_repeat 2 24 0 283 342 0 0 chr1 194869707 194869824 -47794529 + (TGG)n Simple_repeat Simple_repeat 1 117 0 594 301 59 78 chr1 194870719 194871086 -47793267 - L2 LINE L2 -1 3271 2919 794 227 72 0 chr1 194871086 194871280 -47793073 - MER3 DNA MER1_type -1 208 1 594 301 59 78 chr1 194871280 194871551 -47792802 - L2 LINE L2 -353 2919 2644 8094 103 12 20 chr1 194871748 194871826 -47792527 - Tigger1 DNA MER2_type -855 1563 1486 2062 138 0 10 chr1 194871826 194872131 -47792222 + AluSx SINE Alu 1 302 -10 8094 103 12 20 chr1 194872131 194873223 -47791130 - Tigger1 DNA MER2_type -932 1486 387 2398 91 7 0 chr1 194873223 194873532 -47790821 - AluSp SINE Alu -2 311 1 2347 114 0 13 chr1 194873538 194873854 -47790499 - AluSx SINE Alu 0 312 1 8094 103 12 20 chr1 194873854 194874266 -47790087 - Tigger1 DNA MER2_type -2036 382 1 228 135 0 0 chr1 194874877 194874914 -47789439 + (TC)n Simple_repeat Simple_repeat 2 38 0 1994 133 6 37 chr1 194874914 194875236 -47789117 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 194875248 194875271 -47789082 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2127 104 0 14 chr1 194875274 194875562 -47788791 - AluSg SINE Alu -26 284 1 272 27 27 0 chr1 194875576 194875613 -47788740 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 2149 107 21 0 chr1 194875615 194875904 -47788449 - AluSx SINE Alu -1 311 17 2547 65 0 3 chr1 194876148 194876455 -47787898 - AluY SINE Alu -5 306 1 496 211 0 44 chr1 194876908 194877022 -47787331 - MER94 DNA DNA 0 134 26 2457 74 7 10 chr1 194877022 194877332 -47787021 + AluSp SINE Alu 1 309 -4 1902 150 27 3 chr1 194880698 194880992 -47783361 - AluSg SINE Alu -9 301 1 1127 216 35 81 chr1 194882460 194882807 -47781546 + MLT1I LTR MaLR 73 403 -6 368 324 59 26 chr1 194883142 194883461 -47780892 - L1MEc LINE L1 -5920 476 56 216 182 0 23 chr1 194883608 194883652 -47780701 + CT-rich Low_complexity Low_complexity 3 45 0 2622 123 16 9 chr1 194883765 194884197 -47780156 + L1MB3 LINE L1 1912 2346 -4038 1731 179 7 17 chr1 194884407 194884709 -47779644 - AluJb SINE Alu -12 300 2 1836 154 25 42 chr1 194884836 194885168 -47779185 - L1MA6 LINE L1 -4 6296 5969 2408 48 0 78 chr1 194885168 194885501 -47778852 - AluY SINE Alu -4 307 1 1836 154 25 42 chr1 194885501 194885524 -47778829 - L1MA6 LINE L1 -331 5969 5947 10506 200 25 16 chr1 194885611 194885896 -47778457 + L1MB3 LINE L1 3133 3414 -3005 2034 148 0 0 chr1 194885896 194886187 -47778166 + AluSx SINE Alu 10 300 -12 10506 200 25 16 chr1 194886187 194888206 -47776147 + L1MB3 LINE L1 3414 5480 -939 1967 162 7 0 chr1 194888206 194888502 -47775851 - AluJb SINE Alu -14 298 1 10506 200 25 16 chr1 194888502 194889129 -47775224 + L1MB3 LINE L1 5480 6100 -319 2366 57 3 0 chr1 194889508 194889819 -47774534 - AluSg SINE Alu 0 312 1 512 200 100 0 chr1 194890410 194890520 -47773833 - MER58A DNA MER1_type -1 223 103 1926 133 7 10 chr1 194890698 194890992 -47773361 + AluJo SINE Alu 1 293 -19 501 241 62 9 chr1 194891333 194891445 -47772908 - MER58A DNA MER1_type 0 118 1 436 182 13 0 chr1 194891523 194891600 -47772753 - FRAM/FAM SINE Alu -98 78 1 493 250 0 66 chr1 194891603 194891755 -47772598 + MER5B DNA MER1_type 37 178 0 941 285 4 19 chr1 194891787 194892047 -47772306 - MIR SINE MIR -6 256 1 32 0 0 0 chr1 194892114 194892146 -47772207 + AT_rich Low_complexity Low_complexity 1 32 0 888 127 0 0 chr1 194892146 194892264 -47772089 - FLAM_C SINE Alu -25 118 1 1774 120 88 0 chr1 194892279 194892553 -47771800 - AluSx SINE Alu -13 299 2 701 84 0 0 chr1 194892656 194892751 -47771602 - AluSc SINE Alu -2 307 213 607 232 7 26 chr1 194892879 194893030 -47771323 - LTR7 LTR ERV1 0 450 303 616 168 101 25 chr1 194893436 194893555 -47770798 - FLAM_C SINE Alu -5 128 1 1042 125 6 48 chr1 194893566 194893734 -47770619 - AluSx SINE Alu -117 195 35 963 247 36 5 chr1 194893963 194894186 -47770167 - MIR SINE MIR -20 242 13 1908 102 44 44 chr1 194894452 194894746 -47769607 - AluSg SINE Alu -16 294 1 2376 85 0 7 chr1 194895157 194895462 -47768891 + AluSg SINE Alu 1 303 -7 782 122 46 30 chr1 194895711 194895842 -47768511 - FLAM_C SINE Alu 0 133 1 28 0 0 0 chr1 194896342 194896370 -47767983 + AT_rich Low_complexity Low_complexity 1 28 0 3554 60 30 0 chr1 194896374 194896809 -47767544 - LTR7 LTR ERV1 -2 448 1 880 130 0 0 chr1 194896895 194897026 -47767327 - AluJb SINE Alu -1 311 181 2334 92 133 68 chr1 194897072 194897529 -47766824 + LTR21A LTR ERV1 1 487 -18 2551 41 0 0 chr1 194897546 194897839 -47766514 - AluY SINE Alu -18 293 1 29 60 0 0 chr1 194899386 194899436 -47764917 + AT_rich Low_complexity Low_complexity 1 50 0 308 271 62 0 chr1 194900348 194900411 -47763942 + MER5A DNA MER1_type 54 112 -66 1699 190 3 10 chr1 194900411 194900716 -47763637 - AluJb SINE Alu -9 303 1 308 271 62 0 chr1 194900716 194900763 -47763590 + MER5A DNA MER1_type 112 170 -8 2215 105 0 20 chr1 194900786 194901090 -47763263 + AluSc SINE Alu 1 298 -11 1263 174 73 0 chr1 194901288 194901506 -47762847 + MER46A DNA MER2_type 1 234 -2 3513 153 142 11 chr1 194901646 194902330 -47762023 - L1MB7 LINE L1 -41 6143 5293 2309 100 0 6 chr1 194902330 194902641 -47761712 - AluSp SINE Alu -4 309 1 3513 153 142 11 chr1 194902641 194902713 -47761640 - L1MB7 LINE L1 -891 5293 5232 216 196 0 0 chr1 194902800 194902846 -47761507 + T-rich Low_complexity Low_complexity 1 46 0 333 219 12 12 chr1 194902897 194902979 -47761374 - L1MC5 LINE L1 -58 7903 7822 333 0 0 0 chr1 194903080 194903117 -47761236 + (CA)n Simple_repeat Simple_repeat 1 37 0 274 205 79 35 chr1 194903129 194903167 -47761186 - L1MC5 LINE L1 -133 7828 7793 387 0 0 0 chr1 194903167 194903210 -47761143 + (CA)n Simple_repeat Simple_repeat 1 43 0 274 205 79 35 chr1 194903210 194903342 -47761011 - L1MC5 LINE L1 -168 7793 7622 1760 159 32 23 chr1 194903642 194903951 -47760402 - AluJo SINE Alu 0 312 1 2356 71 0 7 chr1 194904447 194904744 -47759609 - AluY SINE Alu -16 295 1 1903 76 8 0 chr1 194904747 194904984 -47759369 - AluSc SINE Alu -70 239 1 1928 118 3 70 chr1 194905252 194905565 -47758788 + AluSx SINE Alu 1 292 -20 213 231 0 0 chr1 194909354 194909406 -47754947 + T-rich Low_complexity Low_complexity 1 52 0 1519 153 30 123 chr1 194909555 194909955 -47754398 - MLT1A1 LTR MaLR -2 363 1 1278 155 53 0 chr1 194909992 194910198 -47754155 + MER46A DNA MER2_type 20 236 0 346 236 132 36 chr1 194910202 194910422 -47753931 + L1MC4 LINE L1 7572 7812 -230 22 0 0 0 chr1 194910537 194910559 -47753794 + AT_rich Low_complexity Low_complexity 1 22 0 229 182 0 0 chr1 194910924 194910968 -47753385 + (GGGTG)n Simple_repeat Simple_repeat 4 47 0 1576 196 10 13 chr1 194911957 194912258 -47752095 - AluJo SINE Alu -12 300 1 1391 142 38 25 chr1 194912994 194913233 -47751120 - AluSx SINE Alu -12 300 59 1684 127 17 55 chr1 194913441 194913732 -47750621 + AluJb SINE Alu 16 295 -17 320 300 88 69 chr1 194914188 194914595 -47749758 + L2 LINE L2 1443 1857 -1457 222 191 21 0 chr1 194914596 194914643 -47749710 + L2 LINE L2 1962 2009 -1305 2313 84 3 3 chr1 194914651 194914949 -47749404 + AluSg SINE Alu 1 298 -12 604 165 10 0 chr1 194914949 194915046 -47749307 - HY3 scRNA scRNA -3 98 1 321 276 184 12 chr1 194915211 194915374 -47748979 - MIR SINE MIR -70 192 2 500 263 88 1 chr1 194915724 194915870 -47748483 + MIR SINE MIR 6 162 -46 467 265 34 0 chr1 194915892 194916009 -47748344 + L2 LINE L2 3188 3308 -5 1627 149 40 0 chr1 194916437 194916686 -47747667 + AluSq SINE Alu 1 259 -54 1304 173 38 4 chr1 194916818 194917055 -47747298 + AluJo SINE Alu 57 301 -11 1806 148 18 0 chr1 194917298 194917575 -47746778 - AluJo SINE Alu -30 282 1 382 372 34 20 chr1 194917795 194917943 -47746410 + L2 LINE L2 3122 3271 -1 1695 178 13 30 chr1 194919034 194919338 -47745015 + AluJo SINE Alu 1 299 -13 2248 131 0 0 chr1 194920097 194920409 -47743944 + AluSx SINE Alu 1 312 0 2574 56 0 0 chr1 194920435 194920741 -47743612 - AluY SINE Alu -5 306 1 1072 168 0 0 chr1 194921076 194921243 -47743110 - AluSg/x SINE Alu -12 298 132 2318 98 7 0 chr1 194921243 194921540 -47742813 - AluSx SINE Alu -13 299 1 225 275 38 38 chr1 194922269 194922349 -47742004 - MIR SINE MIR -56 206 127 2152 119 3 0 chr1 194922352 194922647 -47741706 + AluSg SINE Alu 1 296 -14 419 216 209 14 chr1 194923601 194923749 -47740604 - MIR SINE MIR -39 223 47 1797 153 153 19 chr1 194925095 194925473 -47738880 - Tigger2a DNA MER2_type -1 433 5 26 0 0 0 chr1 194926405 194926431 -47737922 + GC_rich Low_complexity Low_complexity 1 26 0 326 254 0 0 chr1 194927601 194927660 -47736693 - L2 LINE L2 -7 3265 3207 213 211 0 0 chr1 194928569 194928621 -47735732 + (TG)n Simple_repeat Simple_repeat 2 53 0 186 286 0 0 chr1 194929593 194929642 -47734711 + L3 LINE CR1 1196 1244 -333 478 316 132 11 chr1 194930012 194930202 -47734151 + L3 LINE CR1 1345 1557 -20 1494 170 0 0 chr1 194931013 194931254 -47733099 - AluJb SINE Alu -39 273 33 378 0 0 0 chr1 194931969 194932011 -47732342 + (TG)n Simple_repeat Simple_repeat 2 43 0 1429 185 7 45 chr1 194932366 194932697 -47731656 - AluJo SINE Alu 0 312 1 253 197 24 118 chr1 194933069 194933196 -47731157 - MIR SINE MIR -46 216 102 410 282 31 55 chr1 194933404 194933567 -47730786 - MIR SINE MIR -19 243 85 1361 118 9 27 chr1 194933647 194933867 -47730486 + AluSx SINE Alu 1 216 -96 576 254 79 28 chr1 194934832 194935009 -47729344 + MIR SINE MIR 54 239 -23 222 303 91 10 chr1 194936231 194936330 -47728023 - MIR SINE MIR -82 126 20 2464 44 0 0 chr1 194939210 194939505 -47724848 - AluY SINE Alu -16 295 1 464 283 103 7 chr1 194939660 194939805 -47724548 - MIR3 SINE MIR -15 193 35 494 295 137 16 chr1 194940314 194940497 -47723856 + MIR SINE MIR 28 232 -30 180 250 0 0 chr1 194940475 194940511 -47723842 + L2 LINE L2 3215 3250 -22 * 837 103 0 62 chr1 194941190 194941335 -47723018 + AluJo SINE Alu 1 136 -176 451 228 54 67 chr1 194941388 194941537 -47722816 - MIR SINE MIR -3 259 113 2092 118 3 0 chr1 194942543 194942847 -47721506 + AluSx SINE Alu 1 305 -7 1468 122 64 37 chr1 194944120 194944416 -47719937 + AluJb SINE Alu 1 304 -8 2137 91 7 7 chr1 194944419 194944717 -47719636 + AluSx SINE Alu 3 300 -12 2385 55 16 3 chr1 194944717 194945024 -47719329 + AluY SINE Alu 1 311 0 2254 84 0 3 chr1 194945540 194945848 -47718505 - AluSg SINE Alu -3 307 1 677 202 46 17 chr1 194946032 194946205 -47718148 + L1MC/D LINE L1 5640 5817 -1991 584 211 0 32 chr1 194946422 194946545 -47717808 + FLAM_A SINE Alu 1 119 -14 31 57 0 14 chr1 194946545 194946582 -47717771 + AT_rich Low_complexity Low_complexity 1 38 -31 2033 121 0 0 chr1 194946582 194946879 -47717474 + AluSx SINE Alu 1 297 -15 31 57 0 14 chr1 194946879 194946911 -47717442 + AT_rich Low_complexity Low_complexity 38 69 0 1162 95 28 0 chr1 194947146 194947325 -47717028 - L1MA2 LINE L1 -2 6302 6119 235 194 32 32 chr1 194947452 194947545 -47716808 + (CACCC)n Simple_repeat Simple_repeat 3 95 0 212 152 22 0 chr1 194947559 194947605 -47716748 + C-rich Low_complexity Low_complexity 2 48 0 12261 140 55 91 chr1 194947773 194948145 -47716208 - L1MA2 LINE L1 -270 6034 5650 2149 107 3 0 chr1 194948145 194948435 -47715918 - AluSg SINE Alu -13 297 7 12261 140 55 91 chr1 194948435 194948779 -47715574 - L1MA2 LINE L1 -654 5650 5295 1318 168 31 65 chr1 194948779 194949101 -47715252 - AluJo SINE Alu -1 311 1 12261 140 55 91 chr1 194949101 194950029 -47714324 - L1MA2 LINE L1 -1009 5295 4335 1194 80 11 2 chr1 194950029 194950290 -47714063 - AluY SINE Alu 0 311 2 12261 140 55 91 chr1 194950290 194951007 -47713346 - L1MA2 LINE L1 -1969 4335 3594 525 32 0 0 chr1 194951007 194951070 -47713283 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 12261 140 55 91 chr1 194951070 194952268 -47712085 - L1MA2 LINE L1 -2710 3594 2350 273 237 26 13 chr1 194952280 194952356 -47711997 + LTR16B LTR ERVL 388 464 0 501 114 0 0 chr1 194952455 194952525 -47711828 - THE1C LTR MaLR 0 364 295 1122 130 0 0 chr1 194952529 194952691 -47711662 - AluSg/x SINE Alu -15 295 134 1972 133 0 7 chr1 194952693 194952994 -47711359 - AluSx SINE Alu -13 299 1 2016 132 43 0 chr1 194952994 194953297 -47711056 - THE1C LTR MaLR -59 316 1 201 39 0 0 chr1 194953310 194953336 -47711017 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr1 194953339 194953375 -47710978 + AT_rich Low_complexity Low_complexity 1 36 0 7864 29 0 0 chr1 194953375 194954295 -47710058 - L1PA4 LINE L1 -3 6152 5232 181 292 62 0 chr1 194954445 194954493 -47709860 + L2 LINE L2 3222 3272 0 247 261 0 68 chr1 194954737 194954825 -47709528 - MIR3 SINE MIR -24 184 103 1978 85 0 11 chr1 194954907 194955179 -47709174 + AluSx SINE Alu 44 312 0 710 119 0 42 chr1 194955416 194955534 -47708819 - FRAM SINE Alu -10 166 54 297 231 51 26 chr1 194955559 194955637 -47708716 + MIR3 SINE MIR 112 191 -17 304 333 7 33 chr1 194955637 194955790 -47708563 - MER102a DNA MER1_type -1 329 181 616 246 79 20 chr1 194956088 194956340 -47708013 - L1ME3A LINE L1 -218 5952 5686 431 232 119 20 chr1 194956355 194956506 -47707847 - MER112 DNA MER1_type -2 258 93 453 253 85 14 chr1 194956538 194956721 -47707632 - L1P5 LINE L1 -568 5553 5378 1794 118 72 7 chr1 194957030 194957309 -47707044 - AluSg1 SINE Alu -12 297 1 1965 109 14 3 chr1 194957314 194957599 -47706754 - AluSx SINE Alu -24 288 1 230 274 95 36 chr1 194959840 194959924 -47704429 + L2 LINE L2 3169 3257 -15 2078 122 6 10 chr1 194959943 194960254 -47704099 - AluSq SINE Alu -1 312 3 4960 121 5 25 chr1 194962447 194963221 -47701132 + L1PB3 LINE L1 5396 6154 0 2106 131 0 3 chr1 194964020 194964333 -47700020 + AluSx SINE Alu 1 312 0 2111 88 21 0 chr1 194964426 194964710 -47699643 + AluSp SINE Alu 1 290 -23 1026 176 118 61 chr1 194964908 194965221 -47699132 + Charlie4a DNA MER1_type 2 332 -176 856 170 0 15 chr1 194965600 194965735 -47698618 + FLAM_C SINE Alu 1 133 0 459 213 183 53 chr1 194965792 194965961 -47698392 + MLT1J LTR MaLR 317 507 -4 255 320 40 0 chr1 194965969 194966044 -47698309 - L2 LINE L2 -1 3271 3194 1013 196 44 63 chr1 194967497 194967767 -47696586 - LTR40b LTR ERVL -109 353 89 1388 208 31 7 chr1 194967867 194968155 -47696198 + MLT2B2 LTR ERVL 221 515 0 207 0 0 0 chr1 194968699 194968722 -47695631 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1376 161 157 23 chr1 194970535 194970796 -47693557 - AluJb SINE Alu -5 297 2 812 158 11 90 chr1 194970903 194971080 -47693273 - FRAM SINE Alu -17 159 1 1997 120 7 3 chr1 194971092 194971384 -47692969 - AluSx SINE Alu -19 293 1 200 182 0 80 chr1 194973710 194973798 -47690555 + C-rich Low_complexity Low_complexity 5 85 0 293 148 0 33 chr1 194974027 194974088 -47690265 - L2 LINE L2 -1 3312 3254 377 174 70 47 chr1 194974225 194974311 -47690042 - MER105 DNA DNA -22 182 95 305 310 95 9 chr1 194974311 194974427 -47689926 - MIR SINE MIR -116 146 21 318 306 181 0 chr1 194975173 194975317 -47689036 - MIR3 SINE MIR -8 200 31 479 307 42 30 chr1 194975380 194975546 -47688807 - MIR SINE MIR -48 214 47 180 250 95 60 chr1 194976105 194976189 -47688164 - L2 LINE L2 -47 3266 3180 696 249 26 6 chr1 194976295 194976471 -47687882 - MIR SINE MIR -48 214 35 471 224 103 0 chr1 194976468 194976584 -47687769 + L2 LINE L2 3143 3270 -2 * 1559 194 11 0 chr1 194976901 194977180 -47687173 + AluJb SINE Alu 1 282 -30 2222 112 0 6 chr1 194978217 194978530 -47685823 - AluSx SINE Alu -1 311 1 210 71 0 0 chr1 194982241 194982269 -47682084 + (T)n Simple_repeat Simple_repeat 1 28 0 436 280 33 44 chr1 194982754 194982947 -47681406 + MIR3 SINE MIR 4 187 -21 379 353 77 39 chr1 194982936 194983222 -47681131 + L3b LINE CR1 1206 1502 -81 * 912 232 73 5 chr1 194983241 194983461 -47680892 - MIR SINE MIR -8 254 20 213 264 100 27 chr1 194984670 194984780 -47679573 - MIR SINE MIR -33 229 112 239 274 0 0 chr1 194985190 194985252 -47679101 + C-rich Low_complexity Low_complexity 3 64 0 189 309 134 0 chr1 194985460 194985557 -47678796 - MIR SINE MIR -59 149 40 1013 325 38 5 chr1 194986916 194987288 -47677065 - L3 LINE CR1 -3 1574 1191 1075 210 17 4 chr1 194988557 194988790 -47675563 - MIR SINE MIR -10 252 17 195 396 19 19 chr1 194988798 194988843 -47675510 + MER5B DNA MER1_type 1 45 -133 2208 103 3 3 chr1 194988843 194989153 -47675200 + AluSx SINE Alu 1 310 -2 195 396 19 19 chr1 194989153 194989261 -47675092 + MER5B DNA MER1_type 44 154 -24 * 455 180 207 9 chr1 194989157 194989268 -47675085 - MER5A DNA MER1_type -28 161 29 589 200 92 0 chr1 194989905 194990035 -47674318 - MIR SINE MIR -81 181 40 348 24 0 0 chr1 194990264 194990305 -47674048 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr1 194990505 194990539 -47673814 + (TG)n Simple_repeat Simple_repeat 1 34 0 203 296 28 0 chr1 194990704 194990775 -47673578 - MIR SINE MIR -134 128 56 307 340 85 0 chr1 194992215 194992356 -47671997 - L3b LINE CR1 -120 1463 1311 506 319 97 4 chr1 194992638 194992864 -47671489 + L3 LINE CR1 1324 1570 -7 207 243 43 14 chr1 194993111 194993181 -47671172 + CT-rich Low_complexity Low_complexity 3 74 0 242 299 146 85 chr1 194993195 194993593 -47670760 - L2 LINE L2 -3 3269 2848 242 175 16 32 chr1 194993793 194993856 -47670497 + GA-rich Low_complexity Low_complexity 2 63 0 218 275 109 43 chr1 194997620 194997758 -47666595 - L2 LINE L2 -1 3312 3166 2523 48 0 10 chr1 194997788 194998099 -47666254 + AluY SINE Alu 1 308 -3 239 319 80 44 chr1 194999659 194999772 -47664581 - L3b LINE CR1 -132 1451 1335 903 263 76 13 chr1 195000146 195000450 -47663903 + MER102b DNA MER1_type 4 326 -15 451 222 144 36 chr1 195000652 195000819 -47663534 - MIR3 SINE MIR -11 197 13 382 316 59 11 chr1 195001235 195001457 -47662896 - MIR SINE MIR -7 255 20 873 240 56 0 chr1 195002096 195002292 -47662061 + L3 LINE CR1 1370 1576 -1 1469 233 58 58 chr1 195002371 195002940 -47661413 - L2 LINE L2 -1 3312 2735 192 254 55 0 chr1 195003490 195003545 -47660808 - L2 LINE L2 -76 3196 3139 268 403 15 34 chr1 195005013 195005219 -47659134 - L3 LINE CR1 -311 1266 1065 1948 146 0 16 chr1 195005889 195006197 -47658156 + AluJo SINE Alu 1 303 -9 1027 187 18 14 chr1 195006539 195006758 -47657595 - AluJo SINE Alu -7 305 86 2035 79 0 8 chr1 195006761 195007028 -47657325 - AluY SINE Alu -13 298 34 427 307 122 35 chr1 195008679 195008909 -47655444 - MIR SINE MIR -10 252 18 383 238 21 49 chr1 195009528 195009671 -47654682 - L2 LINE L2 -4 3309 3171 1962 122 88 30 chr1 195009731 195010060 -47654293 - MER7A DNA MER2_type 0 346 1 622 192 8 8 chr1 195010587 195010707 -47653646 - MIR SINE MIR -108 154 35 209 255 0 0 chr1 195010992 195011039 -47653314 - MIR SINE MIR -64 144 98 229 191 0 0 chr1 195014248 195014295 -47650058 + (TG)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr1 195014343 195014370 -47649983 + (T)n Simple_repeat Simple_repeat 1 27 0 221 291 90 30 chr1 195014644 195014778 -47649575 + L2 LINE L2 2715 2856 -458 468 250 194 5 chr1 195015119 195015335 -47649018 - MIR SINE MIR 0 262 6 241 350 60 0 chr1 195015908 195016008 -47648345 - L2 LINE L2 -894 2420 2315 216 0 0 0 chr1 195018860 195018884 -47645469 + (A)n Simple_repeat Simple_repeat 1 24 0 360 43 0 0 chr1 195019867 195019913 -47644440 + (TG)n Simple_repeat Simple_repeat 1 46 0 236 237 105 13 chr1 195022898 195022974 -47641379 - L2 LINE L2 -44 3269 3187 189 283 87 11 chr1 195023087 195023179 -47641174 - L3 LINE CR1 -211 1366 1268 2294 94 7 3 chr1 195023480 195023787 -47640566 + AluSg1 SINE Alu 1 308 -1 184 326 136 23 chr1 195024767 195024899 -47639454 - L2 LINE L2 0 3313 3167 238 281 0 61 chr1 195024977 195025059 -47639294 - L2 LINE L2 -1 3312 3236 201 105 0 53 chr1 195026066 195026104 -47638249 + (GGGTG)n Simple_repeat Simple_repeat 5 40 0 649 261 44 0 chr1 195026206 195026386 -47637967 - MIR3 SINE MIR -2 206 19 222 267 47 70 chr1 195027111 195027197 -47637156 + MIR3 SINE MIR 94 177 -31 635 342 44 36 chr1 195028039 195028647 -47635706 + L2 LINE L2 1610 2222 -1092 288 304 29 35 chr1 195028705 195028876 -47635477 + L2 LINE L2 2218 2387 -927 1777 170 0 24 chr1 195028994 195029321 -47635032 + AluJb SINE Alu 1 320 0 918 264 102 25 chr1 195029329 195029723 -47634630 + L1MEc LINE L1 499 922 -5474 1848 159 51 7 chr1 195029725 195030021 -47634332 + AluJb SINE Alu 3 311 -1 1119 198 60 143 chr1 195030083 195030503 -47633850 - MLT1B LTR MaLR -2 388 4 4034 237 91 13 chr1 195030505 195032306 -47632047 + L1MEc LINE L1 1078 2965 -3250 319 299 188 13 chr1 195032353 195032507 -47631846 - MIR SINE MIR -76 186 6 210 333 58 11 chr1 195033105 195033192 -47631161 + MIR SINE MIR 18 108 -154 661 276 79 33 chr1 195033665 195033765 -47630588 + MIR SINE MIR 18 112 -150 2538 134 42 3 chr1 195033765 195034146 -47630207 - MSTD LTR MaLR 0 396 1 661 276 79 33 chr1 195034146 195034259 -47630094 + MIR SINE MIR 112 241 -21 1785 180 3 3 chr1 195034266 195034561 -47629792 - AluJo SINE Alu -17 295 1 198 302 58 47 chr1 195034645 195034731 -47629622 + L2 LINE L2 3100 3186 -86 304 236 213 8 chr1 195035124 195035251 -47629102 + MIR SINE MIR 2 154 -108 181 200 0 0 chr1 195035271 195035311 -47629042 + L2 LINE L2 3274 3313 0 284 243 27 40 chr1 195035612 195035686 -47628667 + MIR SINE MIR 24 96 -112 344 188 0 0 chr1 195035771 195035840 -47628513 - MIR SINE MIR -116 146 78 299 341 0 0 chr1 195035891 195035979 -47628374 + MIR3 SINE MIR 108 195 -13 180 0 0 0 chr1 195036831 195036851 -47627502 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 472 291 93 34 chr1 195036997 195037124 -47627229 - MIR SINE MIR -7 255 137 2082 116 114 62 chr1 195037124 195037353 -47627000 - MSTA LTR MaLR 0 428 166 2258 95 0 7 chr1 195037353 195037664 -47626689 + AluSg SINE Alu 1 309 0 2082 116 114 62 chr1 195037664 195037837 -47626516 - MSTA LTR MaLR -262 166 3 472 291 93 34 chr1 195037837 195037946 -47626407 - MIR SINE MIR -125 137 5 322 261 117 9 chr1 195038656 195038767 -47625586 - MIR3 SINE MIR -1 207 85 324 0 0 0 chr1 195038896 195038932 -47625421 + (CA)n Simple_repeat Simple_repeat 2 37 0 389 256 31 10 chr1 195039141 195039284 -47625069 + MIR SINE MIR 64 262 0 1450 174 27 120 chr1 195040084 195040492 -47623861 + MLT1A2 LTR MaLR 1 370 -4 4696 260 112 32 chr1 195040919 195041569 -47622784 - L1ME3A LINE L1 -213 5934 5337 216 0 0 0 chr1 195041569 195041593 -47622760 + (TG)n Simple_repeat Simple_repeat 2 25 0 4696 260 112 32 chr1 195041593 195043873 -47620480 - L1ME3A LINE L1 -810 5337 2743 296 286 13 0 chr1 195043873 195043950 -47620403 + L2 LINE L2 3175 3252 -20 307 167 14 14 chr1 195044067 195044139 -47620214 - L1M4 LINE L1 -1537 4609 4538 8038 174 25 16 chr1 195044261 195046925 -47617428 + L1PA16 LINE L1 3479 6164 -2 632 280 17 29 chr1 195046918 195047157 -47617196 - L1ME3A LINE L1 -5439 680 445 * 383 309 39 17 chr1 195047361 195047542 -47616811 - L1ME3A LINE L1 -5934 185 1 786 219 127 10 chr1 195048046 195048251 -47616102 + MIR SINE MIR 5 233 -29 1967 171 13 3 chr1 195048380 195048689 -47615664 - AluJo SINE Alu 0 312 1 358 159 48 0 chr1 195049464 195049527 -47614826 - MIR SINE MIR -10 252 187 388 340 69 23 chr1 195049928 195050190 -47614163 + L2 LINE L2 2508 2781 -533 264 351 45 0 chr1 195050281 195050392 -47613961 + L2 LINE L2 2933 3048 -224 286 248 33 33 chr1 195050723 195050844 -47613509 + CT-rich Low_complexity Low_complexity 1 121 0 495 292 82 0 chr1 195051012 195051238 -47613115 - L1ME4a LINE L1 -196 5925 5678 240 293 12 12 chr1 195051240 195051322 -47613031 + T-rich Low_complexity Low_complexity 2 83 0 263 259 82 0 chr1 195051584 195051669 -47612684 + L1ME4a LINE L1 5709 5800 -364 241 276 13 0 chr1 195051813 195051889 -47612464 + (TA)n Simple_repeat Simple_repeat 1 77 0 240 231 0 77 chr1 195051890 195051994 -47612359 + L1ME4a LINE L1 5923 6018 -103 580 318 51 8 chr1 195053111 195053347 -47611006 - MIR SINE MIR -1 261 16 2096 91 4 0 chr1 195053515 195053780 -47610573 + AluSq SINE Alu 3 268 -45 303 255 32 21 chr1 195054336 195054430 -47609923 + MIR SINE MIR 117 211 -51 271 312 143 33 chr1 195055376 195055541 -47608812 + MIR3 SINE MIR 14 190 -61 3015 136 9 54 chr1 195055582 195055634 -47608719 + L1MB7 LINE L1 5642 5695 -489 2410 98 0 3 chr1 195055634 195055941 -47608412 + AluSq SINE Alu 1 306 -7 3015 136 9 54 chr1 195055941 195056447 -47607906 + L1MB7 LINE L1 5695 6175 -9 295 302 36 27 chr1 195058304 195058424 -47605929 - MIR SINE MIR -60 148 40 2159 115 0 0 chr1 195059021 195059338 -47605015 + AluSg SINE Alu 1 317 0 323 212 97 35 chr1 195059785 195059898 -47604455 + MIR3 SINE MIR 48 167 -41 333 294 28 91 chr1 195060140 195060283 -47604070 + L2 LINE L2 3139 3272 0 234 320 48 29 chr1 195061388 195061491 -47602862 - MIR SINE MIR -45 217 113 518 205 0 66 chr1 195061874 195061996 -47602357 - MIR SINE MIR -74 134 21 428 226 89 53 chr1 195063164 195063354 -47600999 + MIR3 SINE MIR 1 197 -11 259 293 53 5 chr1 195063406 195063536 -47600817 + MIR SINE MIR 87 225 -37 224 222 0 0 chr1 195063865 195063910 -47600443 + GA-rich Low_complexity Low_complexity 3 47 0 21 0 0 0 chr1 195063919 195063940 -47600413 + GC_rich Low_complexity Low_complexity 1 21 0 571 271 60 47 chr1 195067139 195067369 -47596984 + MIR SINE MIR 6 238 -24 203 196 22 0 chr1 195067483 195067529 -47596824 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 319 50 43 chr1 195067562 195067703 -47596650 + L2 LINE L2 3123 3264 -8 618 189 22 113 chr1 195068677 195068804 -47595549 + MIR3 SINE MIR 34 140 -68 2064 144 0 13 chr1 195068804 195069116 -47595237 + AluSx SINE Alu 5 312 0 618 189 22 113 chr1 195069116 195069173 -47595180 + MIR3 SINE MIR 140 201 -7 411 241 99 134 chr1 195069253 195069353 -47595000 - MIR SINE MIR -30 232 130 2425 93 0 3 chr1 195069353 195069654 -47594699 - AluSx SINE Alu -12 300 1 411 241 99 134 chr1 195069654 195069785 -47594568 - MIR SINE MIR -132 130 9 201 283 120 43 chr1 195070329 195070421 -47593932 - MIR3 SINE MIR -24 184 86 252 232 141 49 chr1 195070914 195070947 -47593406 - HAL1b LINE L1 -7 1341 1309 679 201 96 20 chr1 195070947 195071196 -47593157 - L1ME4a LINE L1 -65 6056 1187 419 321 65 72 chr1 195071199 195071476 -47592877 + L2 LINE L2 2998 3272 0 301 325 0 0 chr1 195071483 195071560 -47592793 - L1ME LINE L1 -338 5783 5707 317 71 18 54 chr1 195071560 195071616 -47592737 + L1PA13 LINE L1 6101 6154 -9 2234 121 3 0 chr1 195071616 195071913 -47592440 + AluSx SINE Alu 1 298 -14 382 329 27 27 chr1 195072696 195072845 -47591508 - L2 LINE L2 0 3272 3124 219 114 0 0 chr1 195073086 195073121 -47591232 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1596 249 57 40 chr1 195073121 195073884 -47590469 - L2 LINE L2 -13 3300 2527 1177 262 69 0 chr1 195073908 195074271 -47590082 - L1ME3 LINE L1 -7 6155 5768 4310 222 118 28 chr1 195074272 195075052 -47589301 - L2 LINE L2 -769 2545 1599 2268 95 0 0 chr1 195075052 195075358 -47588995 - AluSx SINE Alu 0 306 1 4310 222 118 28 chr1 195075358 195075872 -47588481 - L2 LINE L2 -1715 1599 1133 205 265 0 73 chr1 195075947 195076015 -47588338 - L2 LINE L2 -93 3220 3158 362 294 18 0 chr1 195076145 195076254 -47588099 - L2 LINE L2 -510 2804 2694 510 262 14 21 chr1 195076254 195076399 -47587954 + L1M4 LINE L1 3728 3871 -2275 532 299 152 11 chr1 195076399 195076760 -47587593 - L2 LINE L2 -612 2702 2291 2230 119 0 7 chr1 195077812 195078122 -47586231 - AluSx SINE Alu -4 308 1 674 262 96 18 chr1 195078204 195078433 -47585920 + MIR SINE MIR 16 262 0 286 246 25 76 chr1 195078532 195078650 -47585703 + L2 LINE L2 3202 3313 0 238 286 124 9 chr1 195078819 195078924 -47585429 - MIR3 SINE MIR -89 119 3 1050 185 103 26 chr1 195079329 195079690 -47584663 - MSTC LTR MaLR 0 428 11 219 36 0 0 chr1 195079779 195079807 -47584546 + (TG)n Simple_repeat Simple_repeat 1 28 0 369 0 0 0 chr1 195080321 195080362 -47583991 + (CA)n Simple_repeat Simple_repeat 2 42 0 320 277 0 0 chr1 195080367 195080450 -47583903 + L2 LINE L2 2977 3059 -213 294 267 99 0 chr1 195080734 195080820 -47583533 - MIR SINE MIR -95 167 72 300 341 45 17 chr1 195080820 195080994 -47583359 + MIR SINE MIR 3 182 -80 409 277 75 38 chr1 195081805 195081964 -47582389 + MIR SINE MIR 23 187 -75 1753 184 10 3 chr1 195082586 195082896 -47581457 + AluJo SINE Alu 1 312 0 427 271 29 41 chr1 195083239 195083399 -47580954 + MIR3 SINE MIR 3 162 -65 596 206 161 0 chr1 195083771 195083926 -47580427 + MER5A DNA MER1_type 4 183 -6 455 165 0 70 chr1 195084043 195084158 -47580195 + L1MA7 LINE L1 6185 6291 0 322 286 36 24 chr1 195084168 195084181 -47580172 + MIR SINE MIR 14 25 -183 2055 115 10 7 chr1 195084181 195084477 -47579876 + AluSq SINE Alu 6 302 -11 322 286 36 24 chr1 195084477 195084599 -47579754 + MIR SINE MIR 25 148 -60 231 274 0 0 chr1 195084667 195084718 -47579635 - MIR SINE MIR -62 146 96 2062 122 0 3 chr1 195085123 195085417 -47578936 - AluSx SINE Alu -19 293 1 250 345 35 21 chr1 195085729 195085874 -47578479 + L3b LINE CR1 1278 1424 -159 520 187 52 0 chr1 195086029 195086184 -47578169 - L1MCa LINE L1 -3990 2436 2274 362 291 39 31 chr1 195086184 195086311 -47578042 - L2 LINE L2 -14 3299 3172 279 368 59 0 chr1 195086902 195087038 -47577315 + L3b LINE CR1 1342 1485 -98 271 354 50 0 chr1 195087900 195087999 -47576354 - MIR SINE MIR -60 148 45 324 64 0 0 chr1 195088014 195088061 -47576292 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 333 341 37 0 chr1 195088329 195088464 -47575889 - MIR3 SINE MIR -35 173 34 186 325 113 0 chr1 195089499 195089579 -47574774 + L2 LINE L2 3140 3228 -44 759 244 128 0 chr1 195090589 195090847 -47573506 - LTR33A LTR ERVL -7 516 226 2085 98 22 0 chr1 195091256 195091579 -47572774 - AluSx SINE Alu 0 331 3 614 288 128 58 chr1 195092307 195092440 -47571913 - L2 LINE L2 0 3313 3191 183 42 0 0 chr1 195092440 195092464 -47571889 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 614 288 128 58 chr1 195092464 195092782 -47571571 - L2 LINE L2 -122 3191 2830 998 291 132 25 chr1 195092823 195092904 -47571449 + L2 LINE L2 2412 2483 -830 1930 185 79 3 chr1 195092904 195093272 -47571081 - MSTD LTR MaLR 0 396 1 7444 214 86 25 chr1 195093272 195094905 -47569448 - MSTD-int LTR MaLR 0 1735 2 2287 164 10 25 chr1 195094907 195095309 -47569044 - MSTD LTR MaLR 0 396 1 998 291 132 25 chr1 195095309 195096035 -47568318 + L2 LINE L2 2483 3312 -1 448 344 30 56 chr1 195096317 195096474 -47567879 + MIR SINE MIR 5 165 -97 1489 130 30 4 chr1 195096474 195096704 -47567649 - MER46A DNA MER2_type 0 236 1 448 344 30 56 chr1 195096704 195096770 -47567583 + MIR SINE MIR 165 220 -42 1784 155 14 7 chr1 195096770 195097067 -47567286 + AluJo SINE Alu 1 299 -13 448 344 30 56 chr1 195097067 195097107 -47567246 + MIR SINE MIR 220 260 -2 742 175 7 22 chr1 195097566 195097703 -47566650 + AluJo SINE Alu 5 139 -173 2276 83 3 13 chr1 195097812 195098114 -47566239 - AluSp SINE Alu -14 299 1 188 206 274 14 chr1 195099494 195099567 -47564786 - MIR SINE MIR -51 211 120 222 233 55 14 chr1 195099635 195099708 -47564645 + L3b LINE CR1 1300 1375 -208 257 321 12 0 chr1 195099829 195099910 -47564443 + MIR3 SINE MIR 113 194 -14 436 269 104 28 chr1 195100476 195100658 -47563695 + L2 LINE L2 3118 3313 0 297 279 51 0 chr1 195101023 195101102 -47563251 + MIR SINE MIR 62 144 -118 199 311 83 45 chr1 195104484 195104616 -47559737 - MIR SINE MIR -45 217 81 247 277 134 50 chr1 195106264 195106383 -47557970 + MARNA DNA Mariner 449 577 -9 624 222 150 0 chr1 195106910 195107063 -47557290 + MER5A DNA MER1_type 11 186 -3 333 294 60 34 chr1 195107063 195107233 -47557120 - MIR3 SINE MIR -14 194 25 192 204 41 0 chr1 195110911 195110960 -47553393 + MIR SINE MIR 81 131 -77 256 226 24 36 chr1 195111031 195111115 -47553238 - MIR SINE MIR -70 138 56 508 281 131 36 chr1 195112956 195113292 -47551061 + L1ME3A LINE L1 5478 5841 -329 285 340 40 15 chr1 195113443 195113643 -47550710 + L1ME3A LINE L1 5963 6167 -3 284 344 104 25 chr1 195114607 195114770 -47549583 + L3 LINE CR1 1398 1573 -4 185 265 132 0 chr1 195116378 195116446 -47547907 - MIR SINE MIR -166 96 20 256 358 63 0 chr1 195117250 195117345 -47547008 + MIR SINE MIR 111 211 -51 1951 116 56 0 chr1 195117580 195117865 -47546488 + AluSg SINE Alu 1 301 -9 537 224 7 28 chr1 195118692 195118884 -47545469 - MIR SINE MIR -43 219 37 520 277 121 19 chr1 195120182 195120388 -47543965 + MIR SINE MIR 24 250 -12 245 333 198 0 chr1 195120563 195120659 -47543694 + MIR SINE MIR 16 130 -78 255 291 58 0 chr1 195120922 195121008 -47543345 + L3 LINE CR1 1463 1553 -24 197 355 58 43 chr1 195122098 195122236 -47542117 - L3b LINE CR1 -103 1480 1341 243 0 0 0 chr1 195123715 195123742 -47540611 + (T)n Simple_repeat Simple_repeat 1 27 0 262 347 91 0 chr1 195123954 195124075 -47540278 + L2 LINE L2 2690 2821 -493 214 93 23 23 chr1 195124287 195124330 -47540023 + (TC)n Simple_repeat Simple_repeat 2 44 0 2330 206 18 20 chr1 195124951 195125461 -47538892 - LTR40a LTR ERVL 0 519 11 461 267 60 114 chr1 195125502 195125817 -47538536 + L2 LINE L2 2974 3271 -1 356 293 21 75 chr1 195126014 195126202 -47538151 - L2 LINE L2 -9 3304 3127 184 311 22 67 chr1 195126219 195126354 -47537999 - L2 LINE L2 -307 2965 2837 1061 146 0 39 chr1 195126853 195127031 -47537322 - AluJb SINE Alu -6 306 136 351 0 0 0 chr1 195127563 195127602 -47536751 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2951 145 23 4 chr1 195127725 195128201 -47536152 + MER31A LTR ERV1 1 485 0 3581 178 58 55 chr1 195128437 195129300 -47535053 - MER21A LTR ERV1 -20 911 46 719 118 13 20 chr1 195129631 195129784 -47534569 + Charlie5 DNA MER1_type 2337 2488 -124 21 0 0 0 chr1 195129872 195129893 -47534460 + AT_rich Low_complexity Low_complexity 1 21 0 499 153 31 0 chr1 195130021 195130119 -47534234 - MER58 DNA MER1_type -68 273 173 2491 57 0 25 chr1 195130120 195130470 -47533883 + AluY SINE Alu 1 311 0 1755 162 0 40 chr1 195131089 195131411 -47532942 - AluSx SINE Alu 0 310 1 1709 183 3 14 chr1 195131418 195131707 -47532646 - AluJb SINE Alu -25 287 2 393 97 0 0 chr1 195132392 195132454 -47531899 - L1MA4 LINE L1 -143 6157 6096 270 0 0 0 chr1 195133968 195133998 -47530355 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 269 209 0 chr1 195134264 195134331 -47530022 + MIR SINE MIR 162 242 -20 2060 125 32 0 chr1 195134555 195134834 -47529519 + AluSx SINE Alu 3 290 -22 2687 193 20 4 chr1 195134998 195135495 -47528858 + MLT1D LTR MaLR 1 505 0 250 240 154 10 chr1 195135498 195135602 -47528751 - MIR SINE MIR -109 153 35 280 315 40 38 chr1 195136540 195136676 -47527677 - MIR SINE MIR -59 149 29 277 215 31 0 chr1 195137189 195137254 -47527099 - L2 LINE L2 -1 3312 3246 * 1564 290 76 46 chr1 195137240 195138213 -47526140 - L2 LINE L2 -169 3103 2080 182 337 124 28 chr1 195138229 195138407 -47525946 - L2 LINE L2 -6 3266 3072 2223 115 0 3 chr1 195138507 195138803 -47525550 + AluSc SINE Alu 1 295 -14 195 329 112 53 chr1 195139693 195139845 -47524508 + L2 LINE L2 3112 3272 0 674 299 95 74 chr1 195139991 195140137 -47524216 - L2 LINE L2 0 3313 3172 203 0 37 0 chr1 195140137 195140164 -47524189 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 674 299 95 74 chr1 195140164 195140449 -47523904 - L2 LINE L2 -141 3172 2873 197 287 194 28 chr1 195140542 195140650 -47523703 + MIR SINE MIR 6 131 -131 225 314 0 41 chr1 195140862 195140983 -47523370 + CT-rich Low_complexity Low_complexity 3 118 0 293 230 27 0 chr1 195141859 195141933 -47522420 - MIR3 SINE MIR -43 165 90 2776 124 9 34 chr1 195143285 195143303 -47521050 - MER57B LTR ERV1 0 434 417 2143 118 0 0 chr1 195143303 195143582 -47520771 + AluSx SINE Alu 1 279 -33 244 0 27 27 chr1 195143584 195143621 -47520732 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2776 124 9 34 chr1 195143621 195144044 -47520309 - MER57B LTR ERV1 -18 416 1 1352 295 65 47 chr1 195144549 195145582 -47518771 + L1M4 LINE L1 3443 4494 -1652 705 127 153 8 chr1 195145589 195145707 -47518646 + AluJo SINE Alu 2 136 -176 1269 312 83 10 chr1 195145707 195146963 -47517390 + L1M1 LINE L1 4477 5844 -349 235 131 33 33 chr1 195146969 195147030 -47517323 + L1ME3A LINE L1 5891 5951 -219 513 235 46 46 chr1 195147738 195147891 -47516462 + MER97b DNA MER1_type? 20 172 -881 2213 93 0 7 chr1 195147915 195148217 -47516136 - AluSg SINE Alu 0 305 6 319 252 155 29 chr1 195148278 195148381 -47515972 + L2 LINE L2 3146 3261 -11 210 324 74 56 chr1 195149071 195149355 -47514998 - L2 LINE L2 -86 3186 2898 371 330 91 18 chr1 195149907 195150128 -47514225 + L2 LINE L2 3012 3248 -65 1987 154 0 0 chr1 195150243 195150535 -47513818 + AluJb SINE Alu 1 292 -20 1569 96 0 14 chr1 195150539 195150799 -47513554 + AluSg/x SINE Alu 104 360 0 354 306 65 62 chr1 195150978 195151301 -47513052 - L2 LINE L2 -447 2867 2544 224 366 10 0 chr1 195152110 195152211 -47512142 + MIR SINE MIR 118 219 -43 470 209 9 35 chr1 195156022 195156137 -47508216 - L2 LINE L2 -3 3310 3199 439 288 24 0 chr1 195156129 195156254 -47508099 + MIR SINE MIR 95 222 -40 * 261 323 0 15 chr1 195156315 195156380 -47507973 + L2 LINE L2 3207 3270 -43 236 329 114 0 chr1 195156734 195156813 -47507540 - MER91A DNA MER1_type -19 177 90 227 386 124 0 chr1 195156814 195156959 -47507394 - MER91A DNA MER1_type -22 174 12 1527 197 53 10 chr1 195157286 195157585 -47506768 + AluJo SINE Alu 1 312 0 366 289 176 13 chr1 195158572 195158731 -47505622 - MER5A DNA MER1_type -1 188 4 21 0 0 0 chr1 195160269 195160290 -47504063 + AT_rich Low_complexity Low_complexity 1 21 0 201 268 0 0 chr1 195160682 195160723 -47503630 - MIR SINE MIR -60 148 108 437 266 56 28 chr1 195161397 195161540 -47502813 - MIR3 SINE MIR -25 183 37 187 298 101 32 chr1 195162005 195162163 -47502190 - MIR3 SINE MIR -4 204 36 198 298 184 24 chr1 195162712 195162880 -47501473 + MIR3 SINE MIR 13 207 -1 487 221 181 75 chr1 195163391 195163590 -47500763 + MIR SINE MIR 3 222 -40 236 191 175 0 chr1 195163602 195163665 -47500688 - MIR SINE MIR -43 219 146 210 233 241 17 chr1 195165922 195166038 -47498315 + MIR3 SINE MIR 11 152 -56 2420 94 10 0 chr1 195166181 195166488 -47497865 + AluSp SINE Alu 1 310 -3 897 258 101 44 chr1 195166507 195166894 -47497459 - MLT1C LTR MaLR 0 467 59 551 246 116 0 chr1 195167117 195167255 -47497098 + MIR SINE MIR 27 180 -82 345 299 5 11 chr1 195167768 195167952 -47496401 + L1M4 LINE L1 4254 4436 -1710 345 365 171 0 chr1 195168105 195168316 -47496037 + L1M4 LINE L1 4734 4980 -1166 472 244 38 7 chr1 195169387 195169528 -47494825 + MIR SINE MIR 67 212 -50 558 275 174 12 chr1 195169744 195170089 -47494264 + L2 LINE L2 2387 2787 -527 2636 54 0 0 chr1 195170141 195170472 -47493881 + HERVK11 LTR ERVK 7623 7953 0 6997 115 25 16 chr1 195170472 195171533 -47492820 + MER11C LTR ERVK 1 1071 0 710 249 203 19 chr1 195171533 195171710 -47492643 + L2 LINE L2 2934 3077 -236 207 0 0 0 chr1 195171710 195171733 -47492620 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 710 249 203 19 chr1 195171733 195171876 -47492477 + L2 LINE L2 3077 3313 0 486 202 11 0 chr1 195171919 195172008 -47492345 + MER21B LTR ERV1 1 90 -773 889 221 181 4 chr1 195172030 195172279 -47492074 + MER21B LTR ERV1 19 311 -552 632 175 0 0 chr1 195172287 195172384 -47491969 + AluJ/FLAM SINE Alu 2 98 -214 276 30 0 0 chr1 195172432 195172465 -47491888 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2087 203 95 8 chr1 195172476 195172979 -47491374 + MER21B LTR ERV1 317 863 0 493 271 141 82 chr1 195172991 195173431 -47490922 + L2 LINE L2 2844 3309 -4 279 259 35 0 chr1 195174046 195174131 -47490222 + CT-rich Low_complexity Low_complexity 2 89 0 501 197 51 90 chr1 195174311 195174489 -47489864 + HAL1 LINE L1 17 187 -2320 469 243 136 72 chr1 195174862 195175236 -47489117 + HAL1 LINE L1 535 932 -1575 843 130 34 7 chr1 195175336 195175482 -47488871 + L1MB1 LINE L1 6017 6166 -2 291 323 86 0 chr1 195175502 195175595 -47488758 - L2 LINE L2 -19 3253 3153 1293 208 73 132 chr1 195176289 195176639 -47487714 + L1MC4 LINE L1 202 571 -5474 974 42 0 0 chr1 195176639 195176759 -47487594 + L1PA2 LINE L1 6035 6154 -1 1293 208 73 132 chr1 195176759 195176880 -47487473 + L1MC4 LINE L1 571 634 -5411 2373 88 0 3 chr1 195176880 195177175 -47487178 + AluSg SINE Alu 1 294 -16 1293 208 73 132 chr1 195177175 195177294 -47487059 + L1MC4 LINE L1 634 758 -5287 209 264 31 86 chr1 195177334 195177497 -47486856 + L2 LINE L2 1927 2080 -1234 6829 82 20 4 chr1 195177498 195178515 -47485838 - L1PA11 LINE L1 0 6174 5154 348 186 8 108 chr1 195178515 195178644 -47485709 + L1MC4 LINE L1 726 841 -5204 * 1364 220 98 3 chr1 195178634 195179012 -47485341 + L1M4 LINE L1 3070 3483 -2663 21091 61 2 3 chr1 195179221 195181935 -47482418 + L1P LINE L1 2320 5030 -1116 375 155 0 0 chr1 195181936 195181994 -47482359 + MER69 DNA AcHobo 508 565 -661 2153 117 0 0 chr1 195182006 195182305 -47482048 - AluSg SINE Alu -11 299 1 273 254 14 0 chr1 195183166 195183237 -47481116 - L1MEd LINE L1 -5452 667 596 2241 89 0 0 chr1 195183469 195183760 -47480593 - AluSg SINE Alu -17 293 3 1266 159 71 65 chr1 195184569 195184878 -47479475 - AluJo SINE Alu -1 311 1 1268 99 0 11 chr1 195184911 195185092 -47479261 - AluSx SINE Alu -17 295 117 4091 81 35 0 chr1 195185222 195185800 -47478553 - SVA Other Other -118 1268 671 868 76 15 8 chr1 195185805 195185937 -47478416 - AluSx SINE Alu -180 133 1 32 0 0 0 chr1 195186097 195186129 -47478224 + AT_rich Low_complexity Low_complexity 1 32 0 233 238 119 40 chr1 195186148 195186299 -47478054 - HAL1b LINE L1 -598 750 588 450 234 63 0 chr1 195186362 195186473 -47477880 + LTR41 LTR ERVL 70 187 -586 872 123 0 0 chr1 195187138 195187260 -47477093 + AluJ SINE Alu 1 122 -190 292 217 0 22 chr1 195187271 195187363 -47476990 - L1MC4 LINE L1 -1339 6703 6614 324 193 97 16 chr1 195187370 195187452 -47476901 + L1MC4 LINE L1 2133 7121 -1339 978 171 0 6 chr1 195187461 195187636 -47476717 + AluJ SINE Alu 130 303 -9 354 303 0 20 chr1 195188460 195188559 -47475794 - MIR SINE MIR -10 252 156 1008 259 120 32 chr1 195188568 195188969 -47475384 - LTR16A1 LTR ERVL -12 445 10 748 280 54 17 chr1 195190069 195190308 -47474045 - MLT1J LTR MaLR -263 248 1 709 256 42 5 chr1 195190689 195190880 -47473473 - MIR SINE MIR -60 202 5 311 219 98 12 chr1 195191954 195192036 -47472317 + MIR SINE MIR 42 130 -78 293 217 108 0 chr1 195193518 195193601 -47470752 - MIR SINE MIR -133 129 38 404 257 108 7 chr1 195194021 195194169 -47470184 + MIR SINE MIR 21 183 -79 1289 162 147 15 chr1 195194440 195194712 -47469641 - AluSg1 SINE Alu -1 308 1 311 273 82 50 chr1 195194864 195195073 -47469280 + MIR SINE MIR 38 258 -4 2315 77 3 0 chr1 195195076 195195374 -47468979 + AluY SINE Alu 1 299 -12 1897 92 8 0 chr1 195196218 195196469 -47467884 + AluSx SINE Alu 46 298 -14 235 162 40 0 chr1 195196504 195196578 -47467775 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 206 346 77 0 chr1 195196660 195196738 -47467615 - L3b LINE CR1 -11 1572 1489 654 280 94 72 chr1 195197328 195197742 -47466611 + L2 LINE L2 2850 3272 0 323 239 65 11 chr1 195197885 195197977 -47466376 + MIR SINE MIR 64 160 -102 2300 68 3 16 chr1 195197983 195198290 -47466063 + AluY SINE Alu 1 303 -8 748 253 176 58 chr1 195198364 195198871 -47465482 + L2 LINE L2 2476 3071 -242 1722 149 13 16 chr1 195198871 195199180 -47465173 - AluSx SINE Alu -4 308 1 748 253 176 58 chr1 195199180 195199456 -47464897 + L2 LINE L2 3071 3313 0 849 174 39 22 chr1 195199930 195200054 -47464299 + AluJo SINE Alu 2 131 -181 198 0 0 0 chr1 195200054 195200076 -47464277 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 849 174 39 22 chr1 195200076 195200129 -47464224 + AluJo SINE Alu 131 182 -130 401 300 156 16 chr1 195201786 195201998 -47462355 + MIR SINE MIR 10 244 -18 1684 175 38 0 chr1 195201998 195202290 -47462063 + AluJb SINE Alu 1 303 -9 932 215 17 0 chr1 195202319 195202491 -47461862 + FAM SINE Alu 1 175 0 207 340 101 52 chr1 195202502 195202770 -47461583 + L2 LINE L2 2976 3256 -16 269 279 25 13 chr1 195202889 195202968 -47461385 - MIR3 SINE MIR -19 189 110 186 293 181 17 chr1 195203549 195203665 -47460688 + MIR SINE MIR 117 251 -11 24 53 0 0 chr1 195203882 195203920 -47460433 + AT_rich Low_complexity Low_complexity 1 38 0 804 150 0 0 chr1 195203922 195204049 -47460304 + FLAM_C SINE Alu 17 143 0 490 262 195 7 chr1 195204171 195204320 -47460033 - MIR SINE MIR -48 214 38 263 264 64 56 chr1 195205415 195205540 -47458813 - MIR SINE MIR -39 223 98 14724 121 8 18 chr1 195206171 195206974 -47457379 - L1P LINE L1 -3944 2202 1393 7688 28 6 0 chr1 195206974 195208451 -47455902 + L1PA3 LINE L1 4674 6155 0 14724 121 8 18 chr1 195208451 195209861 -47454492 - L1P LINE L1 -4753 1393 11 291 71 0 0 chr1 195209926 195209968 -47454385 + (T)n Simple_repeat Simple_repeat 1 42 0 219 140 0 0 chr1 195210103 195210153 -47454200 + (CAT)n Simple_repeat Simple_repeat 2 51 0 5475 101 13 0 chr1 195210613 195211378 -47452975 - Tigger1 DNA MER2_type -626 1792 1018 2729 226 62 14 chr1 195211480 195211802 -47452551 + L1MC2 LINE L1 4589 4894 -1252 2624 214 84 21 chr1 195211802 195212371 -47451982 - MER77 LTR ERV1 0 605 1 2729 226 62 14 chr1 195212371 195212825 -47451528 + L1MC2 LINE L1 4894 5402 -744 2180 118 3 3 chr1 195212829 195213143 -47451210 - MER66B LTR ERV1 0 486 173 4437 150 73 16 chr1 195213143 195213695 -47450658 + L1MC2 LINE L1 5405 6027 -317 1684 149 48 7 chr1 195213695 195213990 -47450363 + AluJb SINE Alu 1 307 -5 4437 150 73 16 chr1 195213990 195214310 -47450043 + L1MC2 LINE L1 6027 6327 -17 2056 119 3 0 chr1 195214310 195214613 -47449740 + AluSx SINE Alu 1 304 -8 1023 242 96 85 chr1 195214628 195215273 -47449080 - L1M4 LINE L1 -1910 4236 3600 2121 123 0 0 chr1 195215273 195215574 -47448779 - AluSx SINE Alu -9 303 3 1023 242 96 85 chr1 195215574 195216245 -47448108 - L1M4 LINE L1 -2546 3600 2681 226 268 0 14 chr1 195216284 195216355 -47447998 - L1P LINE L1 -3544 2602 2533 1716 121 35 0 chr1 195216363 195216647 -47447706 + AluSx SINE Alu 16 308 0 1620 181 6 27 chr1 195216705 195217042 -47447311 - L1MC3 LINE L1 -169 7616 7287 602 175 0 10 chr1 195217043 195217140 -47447213 + AluS SINE Alu 2 97 -215 2006 125 3 0 chr1 195217218 195217505 -47446848 + AluSx SINE Alu 1 288 -24 293 253 93 0 chr1 195217514 195217589 -47446764 - L1MC3 LINE L1 -483 7302 7221 487 202 0 0 chr1 195217606 195217695 -47446658 - MLT1F1 LTR MaLR -442 125 37 928 147 41 25 chr1 195217701 195217898 -47446455 - L1MD3 LINE L1 -879 7116 6917 * 2083 205 115 21 chr1 195217882 195218554 -47445799 - L1ME2 LINE L1 -264 5900 5175 * 4145 183 47 9 chr1 195218552 195219610 -47444743 - L1MB2 LINE L1 0 6407 5307 672 229 0 67 chr1 195219636 195219824 -47444529 - L1MB2 LINE L1 -3990 2394 2230 1323 201 98 78 chr1 195219824 195220271 -47444082 - MSTB2 LTR MaLR -1 456 1 672 229 0 67 chr1 195220271 195220366 -47443987 - L1MB2 LINE L1 -4154 2230 2130 222 0 25 50 chr1 195271379 195271419 -47392934 + (CA)n Simple_repeat Simple_repeat 2 40 0 10185 42 2 3 chr1 195271592 195273328 -47391025 - L1PA6 LINE L1 -281 5873 4140 317 251 206 27 chr1 195273521 195273744 -47390609 - L2 LINE L2 -1601 1713 1451 588 275 0 35 chr1 195273991 195274162 -47390191 + MLT1J LTR MaLR 274 438 -73 198 143 0 0 chr1 195274180 195274215 -47390138 + (GGGGA)n Simple_repeat Simple_repeat 2 36 0 204 158 49 73 chr1 195274245 195274327 -47390026 + A-rich Low_complexity Low_complexity 3 82 0 351 315 0 34 chr1 195274504 195274682 -47389671 + GA-rich Low_complexity Low_complexity 2 173 0 1731 133 31 3 chr1 195275166 195275460 -47388893 + AluJb SINE Alu 1 302 -10 193 241 60 60 chr1 195275461 195275544 -47388809 - L3b LINE CR1 -217 1366 1284 27 0 0 0 chr1 195275858 195275885 -47388468 + AT_rich Low_complexity Low_complexity 1 27 0 340 254 85 54 chr1 195275928 195276127 -47388226 - MIR SINE MIR -46 216 21 21 0 0 0 chr1 195277265 195277286 -47387067 + AT_rich Low_complexity Low_complexity 1 21 0 279 261 60 27 chr1 195277524 195277649 -47386704 + MIR SINE MIR 60 188 -62 338 313 234 5 chr1 195277733 195277934 -47386419 - MIR SINE MIR -2 260 14 228 339 40 51 chr1 195278062 195278239 -47386114 + L2 LINE L2 3133 3307 -6 204 77 0 26 chr1 195278835 195278874 -47385479 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2096 91 14 3 chr1 195278874 195279149 -47385204 - AluSg SINE Alu -8 302 1 1526 167 21 3 chr1 195279151 195279433 -47384920 - AluJo SINE Alu -15 297 11 1473 204 18 84 chr1 195279544 195280033 -47384320 + LTR37B LTR ERV1 11 467 -1 541 58 0 81 chr1 195280124 195280159 -47384194 + MADE1 DNA Mariner 1 37 -43 2181 106 0 10 chr1 195280159 195280460 -47383893 - AluSx SINE Alu -14 298 1 541 58 0 81 chr1 195280460 195280510 -47383843 + MADE1 DNA Mariner 37 79 -1 2208 117 0 0 chr1 195280573 195280881 -47383472 - AluSx SINE Alu 0 312 5 346 114 0 0 chr1 195280881 195280925 -47383428 - Alu SINE Alu -258 44 1 373 337 55 35 chr1 195281516 195281715 -47382638 - MIR SINE MIR -10 252 50 1480 115 0 0 chr1 195282700 195282900 -47381453 + AluSx SINE Alu 1 200 -112 502 60 0 0 chr1 195282900 195282967 -47381386 + AluSx SINE Alu 238 304 -6 1640 180 21 0 chr1 195283327 195283611 -47380742 + MLT1B LTR MaLR 1 290 -100 2028 134 3 0 chr1 195283656 195283954 -47380399 - AluSx SINE Alu -13 299 1 418 329 119 17 chr1 195283956 195284255 -47380098 - L1ME4a LINE L1 -294 5827 5497 271 307 124 36 chr1 195284814 195285039 -47379314 - L2 LINE L2 -493 2821 2577 238 227 84 67 chr1 195285049 195285168 -47379185 + L2 LINE L2 3159 3279 -34 477 231 261 0 chr1 195285290 195285424 -47378929 - MIR3 SINE MIR -9 199 31 305 331 56 49 chr1 195285915 195286107 -47378246 + MIR SINE MIR 30 217 -45 306 307 55 8 chr1 195286478 195286605 -47377748 + MIR3 SINE MIR 35 167 -41 2168 114 0 13 chr1 195286979 195287294 -47377059 - AluSx SINE Alu -1 311 1 930 254 38 71 chr1 195287378 195287831 -47376522 - MLT1J1 LTR MaLR -8 438 1 1904 125 31 0 chr1 195287918 195288205 -47376148 + AluSx SINE Alu 1 296 -16 245 250 17 0 chr1 195288466 195288526 -47375827 + MIR SINE MIR 152 212 -50 1107 211 29 0 chr1 195288547 195288751 -47375602 - MER20 DNA MER1_type -9 210 1 21 0 0 0 chr1 195289200 195289221 -47375132 + AT_rich Low_complexity Low_complexity 1 21 0 1873 142 3 0 chr1 195289610 195289905 -47374448 + AluSq SINE Alu 1 296 -17 1455 161 32 32 chr1 195289919 195290241 -47374112 - AluJb SINE Alu 0 322 1 576 297 97 35 chr1 195290285 195290595 -47373758 - L1ME4a LINE L1 -905 5241 4913 2138 73 17 7 chr1 195290629 195290931 -47373422 - AluY SINE Alu -6 305 1 2121 100 41 0 chr1 195290933 195291224 -47373129 - AluSc SINE Alu -2 307 5 253 309 64 0 chr1 195291266 195291360 -47372993 - L1P LINE L1 -1318 4828 4729 2315 93 0 0 chr1 195291388 195291690 -47372663 - AluSx SINE Alu -7 305 4 2088 105 0 0 chr1 195292081 195292366 -47371987 - MER9 LTR ERVK -226 285 1 21922 89 15 4 chr1 195292366 195295339 -47369014 - L1P LINE L1 -3142 3004 1 187 257 57 14 chr1 195295342 195295412 -47368941 + L2 LINE L2 2940 3012 -260 2155 122 11 51 chr1 195295413 195295766 -47368587 + MER1B DNA MER1_type 1 339 0 200 271 21 0 chr1 195295767 195295815 -47368538 + L2 LINE L2 3008 3056 -257 293 276 151 22 chr1 195296049 195296234 -47368119 + L2 LINE L2 3105 3313 0 323 287 40 0 chr1 195298499 195298600 -47365753 - MIR SINE MIR -56 206 102 2002 124 16 3 chr1 195298601 195298923 -47365430 + L1MC1 LINE L1 6008 6333 0 1285 157 0 0 chr1 195298926 195299130 -47365223 + AluJo SINE Alu 85 288 -24 33 80 0 0 chr1 195299130 195299205 -47365148 + AT_rich Low_complexity Low_complexity 1 75 0 338 288 36 58 chr1 195299324 195299463 -47364890 + L2 LINE L2 3137 3272 0 259 237 0 52 chr1 195299479 195299576 -47364777 + GA-rich Low_complexity Low_complexity 1 92 0 225 308 128 0 chr1 195300158 195300236 -47364117 + L2 LINE L2 3168 3255 -17 186 43 0 0 chr1 195300954 195300977 -47363376 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 491 272 159 55 chr1 195301240 195301549 -47362804 + MLT1J LTR MaLR 26 366 -145 357 239 45 60 chr1 195302162 195302296 -47362057 + MIR SINE MIR 21 152 -56 884 262 60 20 chr1 195302359 195302607 -47361746 - MIR SINE MIR 0 262 5 965 108 0 103 chr1 195304779 195304983 -47359370 - MER53 DNA DNA -5 184 2 361 320 36 50 chr1 195304999 195305362 -47358991 + L2 LINE L2 1812 2169 -1145 2093 103 7 0 chr1 195305934 195306225 -47358128 - AluSx SINE Alu -17 295 3 2129 120 0 3 chr1 195306864 195307172 -47357181 - AluSx SINE Alu -5 307 1 1664 193 45 5 chr1 195307174 195307254 -47357099 + L1MA9 LINE L1 4319 4394 -1752 279 0 0 0 chr1 195307254 195307285 -47357068 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 1664 193 45 5 chr1 195307285 195307578 -47356775 + L1MA9 LINE L1 4394 4707 -1439 23 54 0 0 chr1 195307786 195307823 -47356530 + AT_rich Low_complexity Low_complexity 1 37 0 4245 192 24 36 chr1 195307836 195308204 -47356149 + L1MA9 LINE L1 4738 5109 -1203 776 161 8 15 chr1 195308204 195308334 -47356019 - FLAM_C SINE Alu 0 133 5 4245 192 24 36 chr1 195308334 195309524 -47354829 + L1MA9 LINE L1 5109 6279 -33 192 376 43 0 chr1 195309655 195309772 -47354581 + L2 LINE L2 1875 1996 -1318 471 258 255 42 chr1 195309829 195310166 -47354187 - L2 LINE L2 -98 3215 2807 2745 227 25 49 chr1 195310182 195310242 -47354111 + L1MEc LINE L1 793 853 -5362 1883 128 0 3 chr1 195310242 195310554 -47353799 + AluSx SINE Alu 1 311 0 2745 227 25 49 chr1 195310554 195311759 -47352594 + L1MEc LINE L1 853 2085 -4130 2052 118 0 3 chr1 195311759 195312055 -47352298 - AluSx SINE Alu -17 295 1 2745 227 25 49 chr1 195312055 195312142 -47352211 + L1MEc LINE L1 2085 2173 -4042 704 183 0 15 chr1 195312142 195312273 -47352080 + FLAM_A SINE Alu 5 133 0 2745 227 25 49 chr1 195312273 195312879 -47351474 + L1MEc LINE L1 2173 2944 -3271 1257 39 0 13 chr1 195312879 195313035 -47351318 - L1PA2 LINE L1 -3 6152 5999 561 274 88 33 chr1 195313599 195313814 -47350539 - MER102a DNA MER1_type -27 303 77 269 224 35 0 chr1 195314382 195314440 -47349913 + L2 LINE L2 3254 3313 0 301 252 14 101 chr1 195314865 195315004 -47349349 + MIR3 SINE MIR 1 127 -81 799 76 14 28 chr1 195315008 195315153 -47349200 + (TTCC)n Simple_repeat Simple_repeat 3 145 0 2140 73 4 0 chr1 195315258 195315533 -47348820 + L1PA5 LINE L1 5879 6154 0 230 371 36 7 chr1 195315542 195315682 -47348671 - L2 LINE L2 -323 2949 2806 291 368 8 16 chr1 195316337 195316462 -47347891 - L2 LINE L2 -555 2759 2636 787 296 142 29 chr1 195316465 195317016 -47347337 - MLT1L LTR MaLR -2 613 1 729 317 139 13 chr1 195317017 195317405 -47346948 - L2 LINE L2 -706 2608 2172 331 234 21 32 chr1 195317607 195317701 -47346652 - MIR SINE MIR -62 200 108 317 251 206 27 chr1 195317969 195318192 -47346161 - L2 LINE L2 -1601 1713 1451 561 281 0 35 chr1 195318439 195318610 -47345743 + MLT1J LTR MaLR 274 438 -73 229 220 0 33 chr1 195318628 195318719 -47345634 + G-rich Low_complexity Low_complexity 2 89 0 327 245 13 86 chr1 195318881 195319032 -47345321 + L2 LINE L2 1516 1655 -1659 1848 112 4 0 chr1 195320143 195320403 -47343950 - AluSx SINE Alu -51 261 1 30 0 0 0 chr1 195320456 195320486 -47343867 + AT_rich Low_complexity Low_complexity 1 30 0 227 250 69 28 chr1 195320836 195320908 -47343445 - MLT1J LTR MaLR -327 184 110 273 169 0 77 chr1 195320956 195321021 -47343332 - L1MC4 LINE L1 -2 8040 7981 2100 231 59 48 chr1 195321022 195321664 -47342689 - L1MC4 LINE L1 -149 7893 7245 1384 164 60 0 chr1 195321705 195322003 -47342350 - MER58D DNA MER1_type 0 386 71 2204 93 3 3 chr1 195322003 195322304 -47342049 + AluSx SINE Alu 1 301 -11 1362 93 0 0 chr1 195322307 195322489 -47341864 + AluSp SINE Alu 132 313 0 2174 105 0 19 chr1 195322851 195323164 -47341189 - AluSx SINE Alu -5 307 1 2141 52 35 7 chr1 195323170 195323459 -47340894 - AluY SINE Alu -14 297 1 906 210 5 5 chr1 195323477 195323691 -47340662 + Charlie4a DNA MER1_type 189 402 -106 1464 148 23 16 chr1 195323720 195323976 -47340377 + AluJb SINE Alu 45 302 -10 2404 73 0 0 chr1 195323976 195324279 -47340074 + AluSg SINE Alu 1 303 -7 369 292 133 49 chr1 195324525 195324915 -47339438 + L2 LINE L2 2850 3272 0 430 299 139 16 chr1 195325078 195325272 -47339081 + MIR SINE MIR 1 218 -44 196 267 50 17 chr1 195325715 195325775 -47338578 + MIR SINE MIR 201 262 0 234 274 186 29 chr1 195326103 195326205 -47338148 + L3b LINE CR1 1289 1406 -177 215 397 95 21 chr1 195329618 195329860 -47334493 + L3b LINE CR1 1290 1549 -34 234 247 68 27 chr1 195330765 195330838 -47333515 - MIR SINE MIR 0 262 187 2500 74 0 0 chr1 195331372 195331668 -47332685 + AluY SINE Alu 1 296 -15 5299 33 2 0 chr1 195336312 195337029 -47327324 - L1P1 LINE L1 -707 5448 4731 1114 280 68 20 chr1 195337026 195337526 -47326827 + L1ME LINE L1 2865 3388 -2758 * 3184 189 105 15 chr1 195337525 195338402 -47325951 + L1ME LINE L1 4129 5084 -1062 678 209 0 0 chr1 195338438 195338548 -47325805 + FLAM_C SINE Alu 2 111 -32 477 0 0 0 chr1 195338556 195338609 -47325744 + (CA)n Simple_repeat Simple_repeat 2 54 0 1886 190 27 57 chr1 195338811 195339322 -47325031 - MLT1D LTR MaLR 0 505 10 1180 177 14 0 chr1 195339330 195339629 -47324724 + L1ME LINE L1 5152 5453 -713 4597 48 5 0 chr1 195339630 195340190 -47324163 + L1PA8 LINE L1 5599 6162 -10 574 277 14 50 chr1 195340197 195340356 -47323997 + L1ME1 LINE L1 5892 6038 -128 2003 197 157 29 chr1 195340356 195340880 -47323473 - MLT1E LTR MaLR 0 593 3 574 277 14 50 chr1 195340880 195340998 -47323355 + L1ME1 LINE L1 6038 6159 -7 1944 127 20 14 chr1 195341021 195341313 -47323040 + AluSx SINE Alu 1 294 -18 518 288 81 26 chr1 195341315 195341936 -47322417 + L1ME3 LINE L1 4628 5213 -949 2387 96 0 3 chr1 195341936 195342239 -47322114 + AluY SINE Alu 1 302 -9 518 288 81 26 chr1 195342239 195342788 -47321565 + L1ME3 LINE L1 5213 5864 -298 710 296 49 0 chr1 195342788 195342991 -47321362 + MIR SINE MIR 50 262 0 2355 79 0 3 chr1 195343028 195343320 -47321033 - AluSg SINE Alu -19 291 1 2360 86 0 26 chr1 195343356 195343669 -47320684 + AluY SINE Alu 2 306 -5 2090 119 0 0 chr1 195344989 195345267 -47319086 + AluSx SINE Alu 2 279 -33 222 62 0 0 chr1 195345267 195345299 -47319054 + (CA)n Simple_repeat Simple_repeat 1 32 0 244 357 153 10 chr1 195345515 195345711 -47318642 + MIR SINE MIR 20 243 -19 842 58 29 0 chr1 195345974 195346077 -47318276 + U6 snRNA snRNA 2 107 0 236 291 38 0 chr1 195346271 195346350 -47318003 - MIR3 SINE MIR -22 186 105 503 187 14 22 chr1 195346833 195346972 -47317381 + CT-rich Low_complexity Low_complexity 2 139 0 1925 163 7 0 chr1 195346972 195347266 -47317087 - AluJb SINE Alu -16 296 1 375 265 88 7 chr1 195347266 195347402 -47316951 - MIR SINE MIR -79 183 37 390 318 41 29 chr1 195349434 195349592 -47314761 - MIR3 SINE MIR -54 154 30 543 253 86 17 chr1 195351605 195351779 -47312574 + MIR SINE MIR 77 262 0 189 107 0 0 chr1 195352660 195352688 -47311665 + (A)n Simple_repeat Simple_repeat 1 28 0 607 234 188 23 chr1 195353300 195353518 -47310835 + MIR SINE MIR 9 262 0 220 283 42 75 chr1 195354239 195354417 -47309936 + MIR SINE MIR 35 212 -50 2599 52 3 0 chr1 195354448 195354754 -47309599 + AluY SINE Alu 2 308 -3 618 161 0 12 chr1 195355553 195355774 -47308579 + AluJo SINE Alu 1 296 -16 2435 82 3 3 chr1 195355928 195356233 -47308120 - AluSc SINE Alu -4 305 1 790 283 89 36 chr1 195356333 195356568 -47307785 + L1ME3A LINE L1 5414 5635 -535 1144 159 9 65 chr1 195356568 195356800 -47307553 + MER20 DNA MER1_type 1 219 0 790 283 89 36 chr1 195356800 195357069 -47307284 + L1ME3A LINE L1 5635 5945 -225 2070 116 10 3 chr1 195357342 195357635 -47306718 - AluSg SINE Alu -15 295 1 857 142 0 15 chr1 195357704 195357870 -47306483 + FLAM_C SINE Alu 2 165 0 389 164 118 64 chr1 195358138 195358248 -47306105 + MLT1C LTR MaLR 10 125 -342 1005 159 69 133 chr1 195358285 195358357 -47305996 + MLT1C LTR MaLR 95 170 -297 2367 97 3 0 chr1 195358357 195358655 -47305698 - AluSq SINE Alu -14 299 1 1005 159 69 133 chr1 195358655 195358953 -47305400 + MLT1C LTR MaLR 170 464 -3 1739 197 3 10 chr1 195359150 195359449 -47304904 + AluJo SINE Alu 1 297 -15 829 261 112 71 chr1 195359505 195360023 -47304330 + LTR67 LTR ERVL 19 557 0 1659 96 0 26 chr1 195360116 195360346 -47304007 + AluY SINE Alu 1 224 -87 609 170 54 27 chr1 195362082 195362229 -47302124 + Charlie4 DNA MER1_type 50 200 -1761 333 217 33 0 chr1 195362225 195362317 -47302036 - AluSp/q SINE Alu 0 303 209 * 362 150 0 0 chr1 195362587 195362647 -47301706 + (GGGAA)n Simple_repeat Simple_repeat 2 61 0 337 266 177 8 chr1 195362957 195363081 -47301272 + MIR3 SINE MIR 9 153 -55 325 308 94 8 chr1 195364060 195364177 -47300176 - L2 LINE L2 -13 3259 3133 2358 83 10 0 chr1 195364923 195365223 -47299130 + AluSp SINE Alu 1 303 -10 818 145 0 0 chr1 195365320 195365437 -47298916 + AluJo SINE Alu 1 117 -195 204 40 0 0 chr1 195365440 195365465 -47298888 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 599 268 117 19 chr1 195365486 195365751 -47298602 - MLT1J LTR MaLR 0 511 221 1186 147 0 6 chr1 195365810 195365987 -47298366 + AluJo SINE Alu 120 295 -17 254 206 94 100 chr1 195365991 195366161 -47298192 - MLT1J LTR MaLR -340 171 3 399 248 85 35 chr1 195366163 195366304 -47298049 - L2 LINE L2 -258 3014 2867 274 260 39 94 chr1 195367090 195367217 -47297136 + MER5A DNA MER1_type 47 166 -23 * 332 303 37 9 chr1 195367115 195367224 -47297129 - MER5A DNA MER1_type -50 139 28 422 204 102 0 chr1 195367271 195367359 -47296994 + MIR SINE MIR 48 144 -64 3315 102 20 2 chr1 195368077 195368527 -47295826 - LTR22A LTR ERVK 0 458 1 791 105 0 0 chr1 195368527 195368641 -47295712 - HERVK22 LTR ERVK 0 6837 6724 * 6489 143 31 13 chr1 195368638 195370367 -47293986 - HERVK22 LTR ERVK -1732 5105 1 3199 81 60 0 chr1 195370367 195370797 -47293556 - LTR22A LTR ERVK 0 458 3 2024 113 3 11 chr1 195370813 195371130 -47293223 + AluSg SINE Alu 1 315 0 214 276 112 105 chr1 195371190 195371342 -47293011 - L3 LINE CR1 -60 1517 1365 513 271 59 54 chr1 195371343 195371564 -47292789 - MIR SINE MIR -2 260 39 967 152 14 60 chr1 195371581 195371798 -47292555 - MER20 DNA MER1_type -1 218 12 526 231 88 85 chr1 195371825 195371929 -47292424 - L3 LINE CR1 -200 1377 1275 1856 154 27 24 chr1 195371929 195372222 -47292131 + AluJo SINE Alu 1 294 -18 526 231 88 85 chr1 195372222 195372377 -47291976 - L3 LINE CR1 -302 1275 1117 342 340 94 45 chr1 195372450 195372694 -47291659 + L2 LINE L2 3014 3269 -3 2236 95 0 36 chr1 195372789 195373095 -47291258 - AluSg SINE Alu -4 306 12 220 322 8 59 chr1 195373672 195373790 -47290563 - L2 LINE L2 -42 3230 3119 523 320 29 0 chr1 195374525 195374697 -47289656 + L3 LINE CR1 744 920 -657 664 208 18 60 chr1 195374757 195374925 -47289428 - MIR SINE MIR -56 206 46 250 297 60 115 chr1 195374940 195375122 -47289231 + L3 LINE CR1 997 1168 -409 191 253 40 50 chr1 195375144 195375243 -47289110 + L2 LINE L2 2417 2514 -800 858 303 147 23 chr1 195375311 195376009 -47288344 + L2 LINE L2 2521 3312 -1 604 221 215 46 chr1 195376131 195376188 -47288165 - MIR SINE MIR -21 241 195 2167 123 0 0 chr1 195376188 195376517 -47287836 + AluSx SINE Alu 1 329 0 604 221 215 46 chr1 195376517 195376653 -47287700 - MIR SINE MIR -67 195 14 7205 58 1 0 chr1 195377180 195378898 -47285455 + L1PA5 LINE L1 4462 6186 0 245 296 146 79 chr1 195379594 195379861 -47284492 + L3b LINE CR1 1296 1580 -3 495 346 87 9 chr1 195379918 195380149 -47284204 - MIR SINE MIR -6 256 8 449 188 40 20 chr1 195380277 195380378 -47283975 + MIR3 SINE MIR 85 187 -21 255 300 11 11 chr1 195381529 195381619 -47282734 + L2 LINE L2 2969 3058 -214 301 213 0 0 chr1 195381626 195381687 -47282666 - L2 LINE L2 0 3272 3212 219 298 48 48 chr1 195383388 195383492 -47280861 - MIR SINE MIR -93 115 12 276 238 0 0 chr1 195383701 195383785 -47280568 + CT-rich Low_complexity Low_complexity 3 86 0 240 324 88 0 chr1 195383787 195383889 -47280464 - L2 LINE L2 -15 3257 3147 1548 239 35 27 chr1 195385168 195385658 -47278695 - MLT1F LTR MaLR -17 525 1 209 195 24 0 chr1 195386187 195386228 -47278125 + MIR SINE MIR 27 68 -140 2358 181 78 0 chr1 195386271 195386719 -47277634 + MLT1D LTR MaLR 20 502 -3 2171 226 92 4 chr1 195386800 195387310 -47277043 + MLT1H1 LTR MaLR 1 555 0 1263 213 95 32 chr1 195387521 195387859 -47276494 + MLT1A2 LTR MaLR 1 359 -15 669 277 47 23 chr1 195388802 195389058 -47275295 + MIR SINE MIR 1 262 0 2061 151 0 25 chr1 195389074 195389391 -47274962 + AluJb SINE Alu 1 309 -3 202 229 0 0 chr1 195390593 195390641 -47273712 + A-rich Low_complexity Low_complexity 1 48 0 535 245 25 105 chr1 195392128 195392321 -47272032 + L2 LINE L2 2148 2312 -1002 2203 112 3 7 chr1 195392321 195392615 -47271738 + AluSq SINE Alu 1 293 -20 535 245 25 105 chr1 195392615 195392707 -47271646 + L2 LINE L2 2312 2410 -904 187 231 58 0 chr1 195393074 195393126 -47271227 + L2 LINE L2 3020 3074 -198 217 250 16 31 chr1 195393207 195393271 -47271082 + MER5A DNA MER1_type 62 124 -65 201 310 69 26 chr1 195393321 195393437 -47270916 + L2 LINE L2 3160 3280 -33 365 230 62 18 chr1 195393457 195393570 -47270783 - MIR SINE MIR -21 241 124 680 279 177 14 chr1 195393700 195394105 -47270248 + MLT1J LTR MaLR 1 511 0 2027 121 41 0 chr1 195395167 195395457 -47268896 - AluSx SINE Alu -10 302 1 1022 236 0 0 chr1 195395548 195395760 -47268593 + MIR SINE MIR 31 242 -20 351 238 66 49 chr1 195395793 195395838 -47268515 - MIR SINE MIR -70 192 149 2336 79 17 0 chr1 195395838 195396128 -47268225 + AluSg SINE Alu 1 295 -15 351 238 66 49 chr1 195396128 195396204 -47268149 - MIR SINE MIR -113 149 69 228 197 155 0 chr1 195396941 195397012 -47267341 - MIR SINE MIR -70 192 111 775 244 31 27 chr1 195397141 195397366 -47266987 - Charlie8 DNA MER1_type -2183 234 9 1291 259 156 36 chr1 195397471 195397796 -47266557 - L2 LINE L2 -11 3302 3018 498 73 0 37 chr1 195397796 195397878 -47266475 + MADE1 DNA Mariner 2 80 0 1291 259 156 36 chr1 195397878 195398230 -47266123 - L2 LINE L2 -295 3018 2710 669 237 116 11 chr1 195398230 195398420 -47265933 + MER63A DNA MER1_type 1 210 0 1291 259 156 36 chr1 195398420 195398615 -47265738 - L2 LINE L2 -603 2710 2312 429 262 41 86 chr1 195398673 195398940 -47265413 - L1MEd LINE L1 -4446 1683 1429 2244 96 4 0 chr1 195398942 195399254 -47265099 + AluSp SINE Alu 1 313 0 631 269 110 51 chr1 195399278 195399981 -47264372 - L1MEd LINE L1 -4862 1257 614 1956 161 13 3 chr1 195400225 195400585 -47263768 - AluSx SINE Alu 0 368 6 23 0 0 0 chr1 195400781 195400804 -47263549 + AT_rich Low_complexity Low_complexity 1 23 0 1517 143 53 13 chr1 195400903 195401059 -47263294 + L1MA8 LINE L1 5326 5474 -817 318 26 0 0 chr1 195401059 195401098 -47263255 + (CA)n Simple_repeat Simple_repeat 2 40 0 1517 143 53 13 chr1 195401098 195401278 -47263075 + L1MA8 LINE L1 5474 5671 -620 3257 184 26 10 chr1 195401311 195401788 -47262565 - Tigger7 DNA MER2_type -1898 589 100 2346 81 7 0 chr1 195401788 195402084 -47262269 + AluSg SINE Alu 1 298 -12 3257 184 26 10 chr1 195402084 195402186 -47262167 - Tigger7 DNA MER2_type -2387 100 1 3137 158 14 14 chr1 195402186 195402773 -47261580 + L1MA8 LINE L1 5669 6255 -36 298 167 38 159 chr1 195402851 195402983 -47261370 + L1ME2 LINE L1 6048 6163 -1 268 239 258 45 chr1 195403697 195403852 -47260501 + MIR SINE MIR 75 262 0 2156 128 3 7 chr1 195404004 195404302 -47260051 + AluSg SINE Alu 1 297 -13 673 244 26 57 chr1 195404321 195404550 -47259803 + L2 LINE L2 3089 3310 -3 364 318 26 13 chr1 195405227 195405381 -47258972 + GA-rich Low_complexity Low_complexity 1 156 0 275 275 44 22 chr1 195405780 195405871 -47258482 + L3b LINE CR1 1296 1388 -195 789 228 65 47 chr1 195407793 195408025 -47256328 + MIR SINE MIR 23 258 -4 358 355 51 27 chr1 195408062 195408318 -47256035 - L2 LINE L2 -93 3179 2918 2306 115 0 0 chr1 195408330 195408634 -47255719 + AluSx SINE Alu 1 304 -8 249 375 24 32 chr1 195408683 195408931 -47255422 - L2 LINE L2 -466 2848 2603 2298 112 0 0 chr1 195409280 195409575 -47254778 - AluSg SINE Alu 0 310 16 478 222 56 0 chr1 195410353 195410479 -47253874 + MIR SINE MIR 41 173 -89 1829 67 5 5 chr1 195412108 195412331 -47252022 + AluY SINE Alu 83 305 -6 2231 97 7 19 chr1 195412342 195412652 -47251701 + AluSq SINE Alu 1 306 -7 234 276 51 41 chr1 195413033 195413131 -47251222 - L2 LINE L2 -4 3268 3170 300 322 59 8 chr1 195413985 195414103 -47250250 - MIR3 SINE MIR -72 136 13 429 262 27 20 chr1 195414107 195414256 -47250097 - MIR3 SINE MIR -26 182 33 395 194 42 73 chr1 195414332 195414497 -47249856 + L1MC5 LINE L1 7766 7925 -36 1701 198 3 0 chr1 195414865 195415158 -47249195 - AluJo SINE Alu -18 294 1 462 271 81 19 chr1 195415492 195415664 -47248689 - MIR SINE MIR -50 212 20 2245 97 0 7 chr1 195415791 195416108 -47248245 - AluSq SINE Alu 0 315 1 324 79 16 32 chr1 195416887 195416950 -47247403 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 364 256 179 8 chr1 195418354 195418471 -47245882 + MER5A DNA MER1_type 50 186 -3 322 192 103 0 chr1 195419338 195419416 -47244937 - MIR SINE MIR -53 209 124 265 202 163 8 chr1 195419842 195419938 -47244415 - MIR SINE MIR -110 152 38 2060 153 0 3 chr1 195420654 195420962 -47243391 + AluJb SINE Alu 5 311 -1 848 148 0 67 chr1 195421183 195421332 -47243021 + FLAM_C SINE Alu 1 139 -4 23 0 0 0 chr1 195422457 195422480 -47241873 + AT_rich Low_complexity Low_complexity 1 23 0 189 147 0 0 chr1 195422869 195422903 -47241450 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 207 291 51 13 chr1 195423372 195423451 -47240902 - MIR SINE MIR -78 184 103 2231 103 3 7 chr1 195423499 195423799 -47240554 - AluSq SINE Alu -5 308 10 2653 62 3 0 chr1 195423820 195424127 -47240226 - AluY SINE Alu -3 308 1 575 303 61 15 chr1 195425484 195425682 -47238671 + MIR SINE MIR 20 226 -36 233 229 0 0 chr1 195427365 195427413 -47236940 + MIR3 SINE MIR 161 208 0 228 229 34 90 chr1 195427732 195427834 -47236519 - MIR3 SINE MIR -48 160 65 234 171 24 134 chr1 195429421 195429467 -47234886 + MIR3 SINE MIR 120 155 -53 2331 69 3 16 chr1 195429467 195429770 -47234583 + AluSx SINE Alu 1 299 -13 234 171 24 134 chr1 195429770 195429805 -47234548 + MIR3 SINE MIR 155 192 -16 2262 129 0 0 chr1 195430908 195431219 -47233134 + AluSx SINE Alu 1 311 -1 787 139 0 29 chr1 195431361 195431498 -47232855 - FLAM_C SINE Alu 0 133 1 192 371 35 35 chr1 195431657 195431800 -47232553 - L2 LINE L2 -5 3267 3125 2489 95 103 7 chr1 195432212 195432621 -47231732 + LTR7 LTR ERV1 1 448 -2 220 342 53 80 chr1 195432645 195432870 -47231483 - L2 LINE L2 -189 3083 2865 505 229 137 0 chr1 195433954 195434085 -47230268 + MIR3 SINE MIR 35 183 -25 1189 203 67 30 chr1 195434279 195434609 -47229744 - MER2 DNA MER2_type -2 342 1 1021 188 11 0 chr1 195435732 195435908 -47228445 + AluJb SINE Alu 134 311 -1 324 305 67 30 chr1 195436271 195436435 -47227918 + L2 LINE L2 3103 3272 0 2348 97 10 0 chr1 195436471 195436770 -47227583 + AluSq SINE Alu 3 304 -9 363 276 43 32 chr1 195437898 195438083 -47226270 + MIR3 SINE MIR 15 201 -7 341 256 23 0 chr1 195439361 195439447 -47224906 - MLT1K LTR MaLR -481 107 20 296 216 68 0 chr1 195439447 195439521 -47224832 - L3 LINE CR1 -231 1346 1268 255 186 0 0 chr1 195440476 195440519 -47223834 + MIR SINE MIR 37 79 -129 182 196 78 0 chr1 195440727 195440778 -47223575 - L3b LINE CR1 -252 1331 1277 581 116 0 53 chr1 195441126 195441315 -47223038 + (CCA)n Simple_repeat Simple_repeat 2 180 0 226 49 24 24 chr1 195441333 195441374 -47222979 + (CCA)n Simple_repeat Simple_repeat 2 42 0 382 163 17 67 chr1 195441909 195442144 -47222209 + (TGGG)n Simple_repeat Simple_repeat 1 223 0 21 0 0 0 chr1 195442330 195442351 -47222002 + GC_rich Low_complexity Low_complexity 1 21 0 180 105 40 65 chr1 195442384 195442508 -47221845 + (TGGG)n Simple_repeat Simple_repeat 1 121 0 295 188 0 44 chr1 195442563 195442744 -47221609 + (CCA)n Simple_repeat Simple_repeat 2 174 0 866 178 7 0 chr1 195442875 195443021 -47221332 - MER46A DNA MER2_type -89 147 1 2217 110 3 7 chr1 195443307 195443608 -47220745 - AluSx SINE Alu -12 300 1 189 74 0 0 chr1 195443741 195443768 -47220585 + (TC)n Simple_repeat Simple_repeat 1 27 0 444 263 69 38 chr1 195444214 195444374 -47219979 + MIR SINE MIR 98 262 0 186 292 167 0 chr1 195444574 195444670 -47219683 + L3b LINE CR1 1345 1456 -127 312 310 0 57 chr1 195445430 195445588 -47218765 + CT-rich Low_complexity Low_complexity 1 149 0 189 171 0 0 chr1 195446072 195446107 -47218246 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 170 21 0 chr1 195446269 195446316 -47218037 + GA-rich Low_complexity Low_complexity 2 49 0 2252 183 21 0 chr1 195446318 195446745 -47217608 - MER63B DNA MER1_type 0 436 1 271 335 98 20 chr1 195447464 195447709 -47216644 - L2 LINE L2 -62 3251 2988 249 312 25 64 chr1 195447835 195447992 -47216361 - MIR SINE MIR -74 188 38 200 131 0 66 chr1 195448210 195448245 -47216108 + (TC)n Simple_repeat Simple_repeat 2 33 -25 180 0 0 0 chr1 195448245 195448265 -47216088 + (TG)n Simple_repeat Simple_repeat 2 21 0 200 131 0 66 chr1 195448265 195448290 -47216063 + (TC)n Simple_repeat Simple_repeat 33 58 0 2342 106 3 3 chr1 195448434 195448745 -47215608 - AluSp SINE Alu -2 311 1 444 251 71 52 chr1 195448932 195449143 -47215210 - MIR SINE MIR -34 228 14 189 213 0 0 chr1 195449375 195449422 -47214931 + GA-rich Low_complexity Low_complexity 2 48 0 293 243 126 18 chr1 195450269 195450380 -47213973 - MIR SINE MIR -50 212 90 231 254 0 14 chr1 195450826 195450897 -47213456 + C-rich Low_complexity Low_complexity 2 71 0 595 244 8 0 chr1 195451409 195451536 -47212817 - FLAM_A SINE Alu -1 132 5 2339 101 10 0 chr1 195452275 195452582 -47211771 + AluSg SINE Alu 1 310 0 341 220 131 62 chr1 195453261 195453339 -47211014 - MIR SINE MIR -53 209 138 2197 91 0 0 chr1 195453339 195453615 -47210738 + AluSx SINE Alu 36 311 -1 341 220 131 62 chr1 195453615 195453715 -47210638 - MIR SINE MIR -124 138 18 551 296 81 27 chr1 195454788 195455159 -47209194 - L2 LINE L2 -51 3262 2872 226 320 82 20 chr1 195455757 195455904 -47208449 + MIR3 SINE MIR 31 186 -22 259 309 11 11 chr1 195456548 195456642 -47207711 + CT-rich Low_complexity Low_complexity 2 95 0 2408 97 0 3 chr1 195457087 195457396 -47206957 + AluSx SINE Alu 1 308 -4 2105 120 13 45 chr1 195460485 195460861 -47203492 + LTR1 LTR ERV1 422 785 0 18258 52 1 2 chr1 195460953 195463302 -47201051 - L1P LINE L1 -795 5351 3004 3818 84 0 4 chr1 195463302 195463815 -47200538 - MER9 LTR ERVK 0 511 1 18258 52 1 2 chr1 195463815 195463863 -47200490 - L1P LINE L1 -3142 3004 2957 671 159 0 0 chr1 195463964 195464071 -47200282 - AluSq/x SINE Alu -204 108 2 780 274 192 12 chr1 195464139 195464566 -47199787 - L2 LINE L2 -596 2718 2215 192 343 14 14 chr1 195465522 195465595 -47198758 - MIR SINE MIR -170 92 20 259 250 73 29 chr1 195465783 195465851 -47198502 - L2 LINE L2 -1 3312 3242 196 235 0 20 chr1 195466675 195466726 -47197627 + L2 LINE L2 3219 3268 -4 653 242 32 47 chr1 195468008 195468198 -47196155 - MIR SINE MIR -71 191 5 570 303 38 29 chr1 195468219 195468457 -47195896 + MIR SINE MIR 20 259 -3 190 341 30 15 chr1 195468448 195468580 -47195773 + L2 LINE L2 3179 3312 -1 * 2309 124 8 39 chr1 195468797 195469184 -47195169 - THE1C LTR MaLR 0 375 1 278 279 25 0 chr1 195469712 195469791 -47194562 + MIR SINE MIR 100 180 -82 1282 146 0 0 chr1 195470097 195470275 -47194078 - AluJb SINE Alu -1 311 134 465 303 97 0 chr1 195470285 195470440 -47193913 + MER5B DNA MER1_type 2 171 -7 2254 95 0 3 chr1 195471552 195471859 -47192494 - AluSc SINE Alu 0 306 1 1012 194 6 0 chr1 195472977 195473157 -47191196 + AluJb SINE Alu 132 312 0 324 196 206 50 chr1 195473186 195473405 -47190948 + LTR33 LTR ERVL 34 286 -235 336 293 189 26 chr1 195473639 195473830 -47190523 + MIR SINE MIR 40 261 -1 245 319 104 35 chr1 195474578 195474722 -47189631 - MIR SINE MIR -28 234 81 434 297 78 21 chr1 195476260 195476452 -47187901 + MIR SINE MIR 45 247 -15 834 252 49 9 chr1 195477460 195477686 -47186667 - MIR SINE MIR -24 238 4 189 184 26 0 chr1 195477705 195477743 -47186610 + L2 LINE L2 3268 3306 -7 2424 87 0 3 chr1 195478208 195478517 -47185836 + AluY SINE Alu 1 308 -3 424 158 0 0 chr1 195478533 195478610 -47185743 - L1MB2 LINE L1 -179 5992 5916 495 320 19 63 chr1 195478614 195478930 -47185423 - L1MB2 LINE L1 -332 5789 5488 269 278 0 0 chr1 195479284 195479356 -47184997 - MIR SINE MIR -119 143 72 267 306 16 41 chr1 195479379 195479500 -47184853 - MIR SINE MIR -13 249 132 227 280 103 74 chr1 195479636 195479975 -47184378 + L2 LINE L2 2921 3269 -3 713 195 13 19 chr1 195480581 195480740 -47183613 + AluSg/x SINE Alu 148 305 -7 287 268 31 10 chr1 195481950 195482047 -47182306 + CT-rich Low_complexity Low_complexity 1 99 0 2263 180 110 11 chr1 195483639 195484167 -47180186 - L1MB5 LINE L1 -8 6166 5587 184 238 24 0 chr1 195484167 195484209 -47180144 - MIR SINE MIR -61 201 159 229 222 49 62 chr1 195484220 195484301 -47180052 + MIR SINE MIR 183 262 0 241 317 89 10 chr1 195484303 195484404 -47179949 - MIR SINE MIR -72 136 28 243 0 0 0 chr1 195484442 195484469 -47179884 + (T)n Simple_repeat Simple_repeat 1 27 0 215 306 105 32 chr1 195484906 195485030 -47179323 - MIR3 SINE MIR -61 147 15 325 266 90 32 chr1 195485662 195485850 -47178503 + L1ME3A LINE L1 5971 6169 -1 385 310 8 31 chr1 195485850 195485979 -47178374 + MIR SINE MIR 20 145 -63 931 200 0 0 chr1 195486006 195486166 -47178187 + FRAM SINE Alu 6 165 -11 1517 225 94 14 chr1 195486308 195486735 -47177618 - MLT1C LTR MaLR -1 466 6 216 337 79 0 chr1 195486888 195486977 -47177376 - MIR SINE MIR -94 168 73 327 142 94 7 chr1 195488043 195488150 -47176203 - MER5A DNA MER1_type -4 185 1 376 264 72 16 chr1 195488159 195488284 -47176069 + MER5A DNA MER1_type 58 189 0 430 252 39 71 chr1 195488843 195488998 -47175355 + MER117 DNA MER1_type 1 150 -47 348 346 47 16 chr1 195490406 195490533 -47173820 + L2 LINE L2 3127 3257 -15 265 237 175 35 chr1 195490542 195490656 -47173697 - L2 LINE L2 0 3313 3184 943 271 62 4 chr1 195491068 195491308 -47173045 + MIR SINE MIR 1 254 -8 365 315 62 43 chr1 195491416 195491578 -47172775 - MER5A DNA MER1_type 0 189 14 1795 122 0 8 chr1 195492289 195492535 -47171818 + AluSg SINE Alu 1 244 -66 969 79 0 31 chr1 195492535 195492662 -47171691 + AluSg/x SINE Alu 176 298 -14 2176 87 0 4 chr1 195492678 195492944 -47171409 + AluSx SINE Alu 37 301 -11 608 239 75 16 chr1 195493326 195493514 -47170839 + MLT1J2 LTR MaLR 39 237 -213 1164 79 17 6 chr1 195493622 195493800 -47170553 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 812 123 0 0 chr1 195493817 195493923 -47170430 - FLAM_C SINE Alu -37 106 1 14862 106 40 4 chr1 195495154 195496355 -47167998 - Tigger1 DNA MER2_type -1 2417 1260 1663 189 0 21 chr1 195496355 195496640 -47167713 - AluJo SINE Alu -33 279 1 14862 106 40 4 chr1 195496640 195497712 -47166641 - Tigger1 DNA MER2_type -1158 1260 63 438 253 253 0 chr1 195548079 195548233 -47116120 + MIR SINE MIR 20 212 -50 260 239 57 79 chr1 195548312 195548457 -47115896 + MIR SINE MIR 12 160 -48 523 249 151 25 chr1 195549075 195549236 -47115117 + MIR SINE MIR 16 211 -51 1899 140 58 41 chr1 195549236 195549316 -47115037 + MER7A DNA MER2_type 1 78 -2960 1706 111 0 0 chr1 195549316 195549569 -47114784 + AluSq SINE Alu 70 322 0 1899 140 58 41 chr1 195549569 195549829 -47114524 + MER7A DNA MER2_type 78 346 0 523 249 151 25 chr1 195549829 195549885 -47114468 + MIR SINE MIR 211 259 -3 2378 86 0 0 chr1 195550225 195550516 -47113837 + AluSc SINE Alu 1 291 -18 627 165 0 0 chr1 195550529 195550620 -47113733 + AluSq SINE Alu 131 221 -92 233 274 88 44 chr1 195550959 195551072 -47113281 + MIR SINE MIR 109 226 -36 246 274 0 0 chr1 195551140 195551191 -47113162 + L2 LINE L2 3251 3301 -12 2168 121 10 0 chr1 195551329 195551626 -47112727 - AluSx SINE Alu -12 300 1 1860 171 0 26 chr1 195552255 195552565 -47111788 - AluJb SINE Alu -9 303 2 244 304 88 0 chr1 195552672 195552774 -47111579 + MIR SINE MIR 70 180 -82 2339 108 3 0 chr1 195553261 195553567 -47110786 + AluSc SINE Alu 2 308 -1 1262 129 0 0 chr1 195553568 195553738 -47110615 + AluSg/x SINE Alu 131 300 -10 2562 50 3 0 chr1 195553986 195554285 -47110068 + AluY SINE Alu 1 300 -11 202 240 0 20 chr1 195554474 195554524 -47109829 - L2 LINE L2 -90 3223 3175 24 0 0 0 chr1 195555924 195555948 -47108405 + AT_rich Low_complexity Low_complexity 1 24 0 1459 187 21 55 chr1 195556000 195556289 -47108064 - AluJo SINE Alu -33 279 1 1892 73 57 0 chr1 195557467 195557712 -47106641 + AluSp SINE Alu 1 259 -54 1899 165 0 22 chr1 195558425 195558741 -47105612 + AluJb SINE Alu 1 309 -3 1354 144 174 4 chr1 195558751 195559032 -47105321 + AluSx SINE Alu 9 329 0 358 181 32 0 chr1 195559707 195559801 -47104552 + T-rich Low_complexity Low_complexity 2 98 0 605 146 0 0 chr1 195559935 195560031 -47104322 + FLAM_A SINE Alu 47 142 0 2335 108 0 9 chr1 195560032 195560348 -47104005 + AluSq SINE Alu 1 313 0 407 286 154 11 chr1 195561168 195561350 -47103003 - MIR SINE MIR -6 256 49 2070 111 42 20 chr1 195561877 195562183 -47102170 + AluSq SINE Alu 1 313 0 803 148 0 63 chr1 195562328 195562361 -47101992 - FLAM_C SINE Alu -169 143 109 2072 121 3 38 chr1 195562361 195562674 -47101679 + AluSx SINE Alu 1 302 -10 803 148 0 63 chr1 195562674 195562782 -47101571 - FLAM_C SINE Alu -203 109 11 241 203 34 0 chr1 195563032 195563049 -47101304 + A-rich Low_complexity Low_complexity 3 18 -45 1891 168 3 19 chr1 195563049 195563365 -47100988 + AluJb SINE Alu 1 311 -1 241 203 34 0 chr1 195563365 195563406 -47100947 + A-rich Low_complexity Low_complexity 18 63 0 2033 141 0 3 chr1 195565699 195566003 -47098350 - AluSx SINE Alu -9 303 1 445 188 125 0 chr1 195566027 195566123 -47098230 - MLT1C LTR MaLR -359 108 1 248 268 36 71 chr1 195566412 195566524 -47097829 - L3b LINE CR1 -206 1377 1270 251 118 0 0 chr1 195567387 195567441 -47096912 - Alu SINE Alu 0 301 248 2066 140 13 0 chr1 195567921 195568228 -47096125 + AluSx SINE Alu 1 311 -1 246 282 204 0 chr1 195568292 195568395 -47095958 - L1M1 LINE L1 -484 5818 5695 2328 107 0 0 chr1 195568889 195569199 -47095154 + AluSx SINE Alu 1 310 -2 331 241 152 27 chr1 195569203 195569315 -47095038 + MIR SINE MIR 28 153 -55 1773 174 11 11 chr1 195569887 195570174 -47094179 + AluJo SINE Alu 1 287 -25 447 19 0 0 chr1 195570174 195570226 -47094127 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 2324 138 5 21 chr1 195570232 195570610 -47093743 + THE1C LTR MaLR 3 374 -1 22 0 0 0 chr1 195570784 195570806 -47093547 + AT_rich Low_complexity Low_complexity 1 22 0 782 332 34 46 chr1 195570810 195571481 -47092872 + L2 LINE L2 1820 2482 -832 221 357 70 23 chr1 195571462 195571834 -47092519 + L2 LINE L2 2641 3060 -212 * 1329 197 113 7 chr1 195571917 195572191 -47092162 - AluJo SINE Alu -9 303 1 387 282 0 99 chr1 195572223 195572365 -47091988 + L2 LINE L2 3139 3266 -6 247 248 65 118 chr1 195573051 195573204 -47091149 - L2 LINE L2 0 3272 3128 241 154 39 0 chr1 195573307 195573359 -47090994 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 2501 74 3 0 chr1 195573395 195573694 -47090659 - AluSp SINE Alu -13 300 1 2199 101 4 0 chr1 195573694 195573972 -47090381 - AluSq SINE Alu -34 279 1 1786 133 0 71 chr1 195574977 195575271 -47089082 - AluJb SINE Alu -39 273 1 696 210 7 7 chr1 195575275 195575418 -47088935 - FRAM SINE Alu -12 164 22 836 246 141 30 chr1 195575495 195575828 -47088525 - L1MC4 LINE L1 -974 7068 6699 508 326 25 51 chr1 195575834 195576110 -47088243 - L1MC4a LINE L1 -1253 6555 6287 2458 75 0 0 chr1 195576110 195576404 -47087949 + AluY SINE Alu 1 294 -17 1034 252 39 60 chr1 195576404 195576671 -47087682 - L1MC4a LINE L1 -1861 5947 5688 1847 121 52 4 chr1 195576671 195576966 -47087387 + AluSx SINE Alu 1 308 0 1034 252 39 60 chr1 195576966 195577082 -47087271 - L1MC4a LINE L1 -2120 5688 5571 207 0 0 0 chr1 195578382 195578405 -47085948 + (GA)n Simple_repeat Simple_repeat 2 24 0 183 259 74 25 chr1 195578849 195578930 -47085423 - L2 LINE L2 -5 3267 3183 1967 144 3 3 chr1 195579468 195579760 -47084593 + AluSq SINE Alu 8 299 -14 2267 110 17 0 chr1 195579771 195580071 -47084282 + AluSq SINE Alu 1 305 -8 2461 87 0 0 chr1 195580593 195580892 -47083461 + AluSq SINE Alu 1 299 -14 313 71 36 0 chr1 195580893 195580949 -47083404 + MER45B DNA AcHobo 846 903 -137 2339 84 0 17 chr1 195580961 195581259 -47083094 + AluSx SINE Alu 1 293 -19 935 263 46 7 chr1 195581765 195582046 -47082307 - L1MC4 LINE L1 -1902 5906 5615 383 258 111 95 chr1 195582116 195582306 -47082047 + MIR SINE MIR 58 250 -12 355 346 85 20 chr1 195582424 195582577 -47081776 + L2 LINE L2 3102 3264 -8 205 359 90 6 chr1 195584809 195584965 -47079388 - L3 LINE CR1 -862 715 547 272 275 9 92 chr1 195586709 195586818 -47077535 + L2 LINE L2 3197 3296 -17 273 283 88 35 chr1 195586913 195587026 -47077327 - MIR SINE MIR -48 214 96 323 103 46 126 chr1 195588322 195588376 -47075977 - MER116 DNA Mariner 0 80 34 2511 56 0 16 chr1 195588376 195588681 -47075672 - AluY SINE Alu -11 300 1 323 103 46 126 chr1 195588681 195588713 -47075640 - MER116 DNA Mariner -46 34 1 281 270 95 36 chr1 195589097 195589234 -47075119 - MIR3 SINE MIR -53 155 11 793 156 96 30 chr1 195590170 195590337 -47074016 - AluJb SINE Alu -20 292 115 309 359 47 8 chr1 195590771 195590899 -47073454 + MER91A DNA MER1_type 1 133 -63 2315 75 41 0 chr1 195590927 195591221 -47073132 + AluY SINE Alu 1 306 -5 271 228 13 25 chr1 195591491 195591570 -47072783 + MIR SINE MIR 109 186 -76 211 296 59 82 chr1 195591951 195592086 -47072267 - MIR SINE MIR -72 190 59 1903 154 10 0 chr1 195592139 195592431 -47071922 + AluJo SINE Alu 1 295 -17 2452 89 0 0 chr1 195593266 195593570 -47070783 - AluSx SINE Alu -8 304 1 408 286 0 21 chr1 195593574 195593714 -47070639 + MER58B DNA MER1_type 205 341 0 762 297 19 5 chr1 195593737 195593949 -47070404 + MIR SINE MIR 2 216 -46 2332 114 3 0 chr1 195595141 195595448 -47068905 + AluSg SINE Alu 1 308 -2 609 275 69 21 chr1 195596411 195596600 -47067753 - MIR3 SINE MIR -8 200 3 202 208 52 26 chr1 195596605 195596682 -47067671 - L2 LINE L2 -683 2631 2553 2082 155 3 0 chr1 195596754 195597058 -47067295 - AluSx SINE Alu -5 307 3 254 359 48 10 chr1 195597073 195597176 -47067177 - L2 LINE L2 -20 3252 3146 321 261 118 25 chr1 195598168 195598287 -47066066 - MIR SINE MIR -114 148 19 1924 163 3 10 chr1 195598644 195598957 -47065396 + AluJo SINE Alu 1 311 -1 571 258 31 8 chr1 195599091 195599219 -47065134 - L2 LINE L2 -4 3309 3179 452 282 139 14 chr1 195599237 195599453 -47064900 + MIR SINE MIR 20 262 0 180 268 24 0 chr1 195600098 195600139 -47064214 + L2 LINE L2 3263 3304 -9 212 267 167 17 chr1 195600245 195600365 -47063988 + MIR SINE MIR 125 262 0 2208 125 0 10 chr1 195600403 195600716 -47063637 + AluSq SINE Alu 1 310 -3 1004 109 68 0 chr1 195600717 195600864 -47063489 + AluSg/x SINE Alu 135 291 -18 1900 185 0 0 chr1 195601530 195601838 -47062515 - AluJb SINE Alu -4 308 1 542 264 163 0 chr1 195603534 195603712 -47060641 - MIR SINE MIR -36 226 20 268 265 169 0 chr1 195603783 195603866 -47060487 + MIR SINE MIR 3 99 -163 2230 102 7 3 chr1 195603866 195604161 -47060192 - AluSq SINE Alu -17 296 1 2603 57 0 0 chr1 195604170 195604468 -47059885 - AluSx SINE Alu -6 306 9 805 175 92 19 chr1 195604469 195604675 -47059678 + Tigger1 DNA MER2_type 2198 2418 0 1433 204 3 29 chr1 195604713 195605027 -47059326 + AluJo SINE Alu 1 306 -6 290 305 62 16 chr1 195605383 195605511 -47058842 - MLT1L LTR MaLR -5 610 477 2077 115 17 7 chr1 195606557 195606845 -47057508 + AluSx SINE Alu 1 291 -21 194 287 10 40 chr1 195606859 195606960 -47057393 + L3b LINE CR1 1335 1432 -151 1608 277 99 19 chr1 195607799 195608594 -47055759 + L2 LINE L2 2437 3313 0 453 263 129 6 chr1 195608616 195608787 -47055566 - MIR SINE MIR -8 254 63 741 139 0 9 chr1 195608878 195608993 -47055360 - MER81 DNA DNA 0 114 1 198 0 0 0 chr1 195610160 195610182 -47054171 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 2088 126 0 32 chr1 195610183 195610493 -47053860 - AluSg SINE Alu -10 300 1 2239 109 3 0 chr1 195610495 195610788 -47053565 - AluSg SINE Alu -16 294 1 1205 143 0 0 chr1 195611292 195611460 -47052893 - AluSg/x SINE Alu -10 300 133 1686 174 7 20 chr1 195611461 195611759 -47052594 - AluJb SINE Alu -18 294 1 317 336 109 0 chr1 195611788 195611916 -47052437 + L2 LINE L2 3125 3266 -6 930 194 225 36 chr1 195613761 195613866 -47050487 + AluJo SINE Alu 1 85 -217 230 0 33 0 chr1 195613866 195613896 -47050457 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 930 194 225 36 chr1 195613896 195614043 -47050310 + AluJo SINE Alu 85 301 -1 831 163 6 11 chr1 195614068 195614246 -47050107 + GA-rich Low_complexity Low_complexity 2 178 0 476 167 0 10 chr1 195614260 195614362 -47049991 + GA-rich Low_complexity Low_complexity 4 104 0 617 159 84 0 chr1 195614484 195614591 -47049762 - L2 LINE L2 -6 3307 3192 2346 92 7 0 chr1 195615388 195615683 -47048670 - AluSx SINE Alu -7 305 9 957 253 0 23 chr1 195616011 195616272 -47048081 - L1M4 LINE L1 -3448 2698 2444 652 164 35 70 chr1 195616376 195616547 -47047806 + Charlie5 DNA MER1_type 2455 2619 0 600 285 58 14 chr1 195617937 195618144 -47046209 - MIR SINE MIR -34 228 13 22 0 0 0 chr1 195619514 195619536 -47044817 + AT_rich Low_complexity Low_complexity 1 22 0 2538 48 3 0 chr1 195620843 195621134 -47043219 - AluY SINE Alu -19 292 1 1983 149 0 3 chr1 195621134 195621423 -47042930 - AluJb SINE Alu -14 298 11 204 378 133 22 chr1 195621446 195621626 -47042727 - L3b LINE CR1 -26 1557 1358 741 139 0 9 chr1 195622745 195622860 -47041493 + MER81 DNA DNA 1 114 0 453 263 129 6 chr1 195622951 195623122 -47041231 + MIR SINE MIR 63 254 -8 1608 277 99 19 chr1 195623144 195623939 -47040414 - L2 LINE L2 0 3313 2437 218 245 21 105 chr1 195624778 195624893 -47039460 - L3b LINE CR1 -151 1432 1330 2171 101 17 7 chr1 195624893 195625181 -47039172 - AluSx SINE Alu -21 291 1 218 245 21 105 chr1 195625181 195625208 -47039145 - L3b LINE CR1 -253 1330 1302 280 147 68 18 chr1 195625724 195625887 -47038466 + (TG)n Simple_repeat Simple_repeat 2 172 0 228 197 164 0 chr1 195626545 195626606 -47037747 - MER81 DNA DNA -34 80 10 1827 186 0 13 chr1 195626652 195626959 -47037394 - AluJb SINE Alu -9 303 1 503 200 0 0 chr1 195626959 195627049 -47037304 - FRAM SINE Alu -10 166 77 194 0 0 37 chr1 195627589 195627616 -47036737 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1934 122 30 0 chr1 195627619 195627890 -47036463 - AluSx SINE Alu -33 279 1 793 161 0 0 chr1 195627911 195628029 -47036324 - FLAM_C SINE Alu -15 118 1 306 0 0 0 chr1 195632119 195632153 -47032200 + (GA)n Simple_repeat Simple_repeat 1 34 0 2272 122 3 0 chr1 195633423 195633734 -47030619 - AluSx SINE Alu 0 312 1 372 289 0 0 chr1 195633867 195633957 -47030396 - MER5A DNA MER1_type -89 100 11 785 248 45 10 chr1 195633969 195634171 -47030182 - MER3 DNA MER1_type 0 209 1 1513 146 64 119 chr1 195634343 195634671 -47029682 - AluSx SINE Alu -2 310 1 309 211 53 0 chr1 195634787 195634863 -47029490 + MER96 DNA MER1_type? 95 174 -1 383 231 106 10 chr1 195635144 195635248 -47029105 - MER81 DNA DNA 0 114 1 347 238 295 16 chr1 195635267 195635389 -47028964 + MIR SINE MIR 107 262 0 431 212 126 73 chr1 195635613 195635764 -47028589 - MIR3 SINE MIR -5 203 45 2000 132 61 0 chr1 195636404 195636684 -47027669 - AluSx SINE Alu -15 297 1 1838 171 10 3 chr1 195637530 195637828 -47026525 + AluJo SINE Alu 1 300 -12 2327 113 0 0 chr1 195637831 195638131 -47026222 + AluSx SINE Alu 2 301 -11 898 265 35 6 chr1 195638612 195638847 -47025506 - MIR SINE MIR -1 261 23 2378 81 0 14 chr1 195639041 195639337 -47025016 + AluSg SINE Alu 1 292 -18 262 280 194 11 chr1 195640359 195640452 -47023901 - L2 LINE L2 -5 3308 3199 258 383 24 18 chr1 195640448 195640657 -47023696 - L2 LINE L2 -350 2963 2751 * 2392 84 0 3 chr1 195641266 195641563 -47022790 + AluSc SINE Alu 1 296 -13 2367 110 0 0 chr1 195642410 195642719 -47021634 - AluSx SINE Alu -2 310 2 416 309 33 13 chr1 195642760 195642912 -47021441 - MIR SINE MIR -85 177 23 387 321 19 19 chr1 195643595 195643754 -47020599 + MER5A DNA MER1_type 27 185 -4 543 189 71 59 chr1 195643900 195644069 -47020284 - L1MC5 LINE L1 -51 7910 7740 1222 107 0 24 chr1 195644072 195644241 -47020112 + AluSg/x SINE Alu 129 293 -19 1853 119 0 0 chr1 195644272 195644516 -47019837 + AluSx SINE Alu 47 290 -22 529 216 46 62 chr1 195644557 195644798 -47019555 - L1MC5 LINE L1 -225 7736 7500 503 152 6 209 chr1 195644874 195645032 -47019321 + MER5A DNA MER1_type 64 189 0 2321 227 30 27 chr1 195645047 195645607 -47018746 - MER68 LTR ERV1 0 562 1 1065 219 66 80 chr1 195645608 195645874 -47018479 - L1MC5 LINE L1 -466 7495 7227 2272 100 3 0 chr1 195645874 195646164 -47018189 + AluSg SINE Alu 1 291 -19 1065 219 66 80 chr1 195646164 195646575 -47017778 - L1MC5 LINE L1 -734 7227 6715 2123 106 0 7 chr1 195646575 195646899 -47017454 - AluSx SINE Alu 0 322 1 233 146 0 0 chr1 195646909 195646950 -47017403 + Alu SINE Alu 29 69 -233 314 219 3 17 chr1 195646952 195647041 -47017312 - L1MC4a LINE L1 -1130 6678 6615 351 0 0 0 chr1 195647220 195647259 -47017094 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 2131 129 0 3 chr1 195647261 195647555 -47016798 - AluSx SINE Alu -19 293 1 361 339 77 47 chr1 195647570 195647803 -47016550 - L1MC4a LINE L1 -1276 6532 6293 1828 163 3 17 chr1 195647900 195648201 -47016152 + AluJo SINE Alu 7 303 -9 230 283 113 39 chr1 195648218 195648385 -47015968 - L1MC4a LINE L1 -1666 6142 5941 2004 114 3 21 chr1 195648385 195648711 -47015642 + AluSx SINE Alu 3 323 0 230 283 113 39 chr1 195648711 195648823 -47015530 - L1MC4a LINE L1 -1867 5941 5839 906 211 21 10 chr1 195648833 195649027 -47015326 + AluJo SINE Alu 90 285 -27 725 202 60 12 chr1 195649885 195650053 -47014300 - MIR SINE MIR -21 241 66 2370 107 0 0 chr1 195650606 195650916 -47013437 - AluSg SINE Alu 0 310 1 242 321 37 46 chr1 195650931 195651040 -47013313 - MIR SINE MIR -152 110 3 1171 138 6 0 chr1 195651136 195651303 -47013050 + AluJb SINE Alu 129 296 -16 604 97 80 44 chr1 195652214 195652327 -47012026 - FLAM_C SINE Alu -2 141 25 236 202 263 20 chr1 195652348 195652376 -47011977 - AluJb SINE Alu -2 300 280 510 46 0 0 chr1 195652376 195652441 -47011912 + (TC)n Simple_repeat Simple_repeat 2 66 0 236 202 263 20 chr1 195652441 195652511 -47011842 - AluJb SINE Alu -22 280 178 2571 69 0 0 chr1 195653191 195653494 -47010859 + AluY SINE Alu 1 303 -8 575 196 13 101 chr1 195653756 195653823 -47010530 + MIR SINE MIR 2 73 -189 2388 97 0 3 chr1 195653823 195654131 -47010222 - AluSg SINE Alu -3 307 1 2153 96 0 4 chr1 195654133 195654404 -47009949 - AluSq SINE Alu -43 270 1 575 196 13 101 chr1 195654404 195654491 -47009862 + MIR SINE MIR 74 145 -117 851 101 7 114 chr1 195654835 195654899 -47009454 - FLAM_C SINE Alu -169 165 96 2087 104 16 45 chr1 195654899 195655207 -47009146 + AluSx SINE Alu 1 299 -13 851 101 7 114 chr1 195655207 195655323 -47009030 - FLAM_C SINE Alu -238 96 1 2389 88 3 0 chr1 195657531 195657826 -47006527 + AluSp SINE Alu 1 296 -17 1696 126 133 0 chr1 195657826 195658096 -47006257 + AluSx SINE Alu 1 306 -6 2424 87 10 0 chr1 195658220 195658529 -47005824 + AluSq SINE Alu 1 312 -1 218 214 0 0 chr1 195659060 195659102 -47005251 + T-rich Low_complexity Low_complexity 4 45 0 189 107 0 0 chr1 195659186 195659214 -47005139 + (A)n Simple_repeat Simple_repeat 1 28 0 2315 103 3 0 chr1 195660526 195660826 -47003527 + AluSg SINE Alu 1 301 -9 2132 98 54 0 chr1 195660852 195661147 -47003206 + AluY SINE Alu 1 311 0 658 103 0 0 chr1 195661698 195661785 -47002568 + AluSg/x SINE Alu 211 297 -15 203 330 0 41 chr1 195662035 195662132 -47002221 + CT-rich Low_complexity Low_complexity 3 95 0 194 91 30 0 chr1 195662638 195662671 -47001682 + T-rich Low_complexity Low_complexity 3 36 0 2161 85 27 24 chr1 195662979 195663273 -47001080 + AluY SINE Alu 1 295 -16 2302 92 10 0 chr1 195663382 195663677 -47000676 + AluSx SINE Alu 1 298 -14 2155 123 10 0 chr1 195663677 195664059 -47000294 + AluSx SINE Alu 1 385 0 2280 106 0 7 chr1 195664605 195664907 -46999446 + AluSq SINE Alu 1 300 -13 2308 108 3 3 chr1 195664907 195665214 -46999139 + AluSp SINE Alu 1 307 -6 562 175 0 21 chr1 195666945 195667042 -46997311 + MLT1C LTR MaLR 1 95 -410 1680 112 0 0 chr1 195667043 195667257 -46997096 + AluSx SINE Alu 1 214 -98 400 138 75 0 chr1 195667257 195667337 -46997016 - MLT1D LTR MaLR -333 172 87 1169 225 0 8 chr1 195667378 195667618 -46996735 - AluSx SINE Alu -74 238 1 1007 227 45 0 chr1 195667623 195667857 -46996496 + MLT1C LTR MaLR 157 564 -62 2334 103 0 6 chr1 195667857 195668169 -46996184 - AluSg SINE Alu 0 310 1 1007 227 45 0 chr1 195668169 195668182 -46996171 + MLT1C LTR MaLR 564 575 -51 * 1101 119 0 0 chr1 195668174 195668342 -46996011 - MER41B LTR ERV1 -467 168 1 404 263 89 98 chr1 195668415 195668639 -46995714 - L2 LINE L2 -32 3240 3019 1136 169 0 91 chr1 195668660 195668866 -46995487 - AluJo SINE Alu -3 309 127 2338 97 0 13 chr1 195668866 195669166 -46995187 + AluSg SINE Alu 1 296 -14 1136 169 0 91 chr1 195669166 195669202 -46995151 - AluJo SINE Alu -185 127 89 2323 81 3 0 chr1 195669238 195669533 -46994820 + AluSp SINE Alu 1 296 -17 237 219 55 0 chr1 195669548 195669621 -46994732 - HAL1b LINE L1 -29 1319 1243 227 214 0 14 chr1 195669625 195669695 -46994658 - HAL1b LINE L1 -240 1108 1040 1974 148 0 7 chr1 195669697 195669994 -46994359 + AluSx SINE Alu 1 295 -17 825 133 8 8 chr1 195669994 195670114 -46994239 - AluJo/FLAM SINE Alu -192 120 1 1400 81 29 38 chr1 195671765 195671974 -46992379 + AluSc SINE Alu 82 288 -21 2311 91 10 0 chr1 195672087 195672383 -46991970 + AluSx SINE Alu 1 299 -13 2296 102 3 19 chr1 195672383 195672698 -46991655 + AluSg SINE Alu 1 310 0 2332 94 0 23 chr1 195673844 195674153 -46990200 + AluSq SINE Alu 2 303 -10 182 188 0 21 chr1 195678072 195678120 -46986233 + T-rich Low_complexity Low_complexity 112 158 0 195 139 0 0 chr1 195682023 195682059 -46982294 + (T)n Simple_repeat Simple_repeat 1 36 0 808 109 0 62 chr1 195682359 195682487 -46981866 + FLAM_A SINE Alu 1 120 -13 189 0 0 0 chr1 195682488 195682509 -46981844 + (CA)n Simple_repeat Simple_repeat 2 22 0 2413 94 3 0 chr1 195682648 195682946 -46981407 + AluSp SINE Alu 1 299 -14 2182 121 0 26 chr1 195682949 195683079 -46981274 + AluSp SINE Alu 3 135 -178 2418 94 0 3 chr1 195683079 195683388 -46980965 + AluY SINE Alu 1 308 -3 2182 121 0 26 chr1 195683388 195683563 -46980790 + AluSp SINE Alu 135 300 -13 2426 96 0 0 chr1 195683708 195684010 -46980343 + AluSc SINE Alu 1 302 -7 430 129 0 0 chr1 195684415 195684485 -46979868 - AluSp/q SINE Alu -5 308 239 2168 96 0 7 chr1 195684586 195684866 -46979487 - AluSq SINE Alu -35 278 1 2173 96 0 26 chr1 195685522 195685825 -46978528 + AluSx SINE Alu 9 303 -9 1465 184 46 0 chr1 195685969 195686251 -46978102 - AluJo SINE Alu -17 295 1 1318 152 0 0 chr1 195686636 195686880 -46977473 + AluSg/x SINE Alu 83 312 0 1946 144 0 3 chr1 195686885 195687191 -46977162 + AluSx SINE Alu 2 306 -6 2088 129 7 0 chr1 195687529 195687838 -46976515 + AluSx SINE Alu 1 311 -1 1442 201 16 36 chr1 195687895 195688024 -46976329 + AluJb SINE Alu 1 131 -181 2098 101 17 0 chr1 195688024 195688312 -46976041 + AluSx SINE Alu 1 293 -19 1442 201 16 36 chr1 195688312 195688490 -46975863 + AluJb SINE Alu 131 302 -10 243 229 0 0 chr1 195688497 195688545 -46975808 + L3 LINE CR1 1528 1575 -2 241 362 32 0 chr1 195688862 195688956 -46975397 + MIR SINE MIR 17 113 -95 2057 130 0 3 chr1 195689186 195689493 -46974860 - AluSp SINE Alu -7 306 1 1195 118 0 0 chr1 195689495 195689665 -46974688 - AluSp SINE Alu -15 298 129 324 119 0 0 chr1 195689665 195689724 -46974629 + (T)n Simple_repeat Simple_repeat 1 59 0 1050 90 0 0 chr1 195689724 195689857 -46974496 - AluSq/x SINE Alu -179 133 1 280 191 381 0 chr1 195689981 195690086 -46974267 - L2 LINE L2 0 3313 3169 1023 158 0 0 chr1 195690086 195690250 -46974103 + FRAM SINE Alu 1 163 -13 185 245 19 0 chr1 195690266 195690319 -46974034 - L2 LINE L2 -140 3173 3120 2184 97 3 3 chr1 195690319 195690618 -46973735 + AluSq SINE Alu 1 299 -14 2137 107 17 0 chr1 195690629 195690929 -46973424 + AluSq SINE Alu 1 305 -8 2004 105 48 0 chr1 195691451 195691746 -46972607 + AluSp SINE Alu 1 309 -4 1099 102 17 0 chr1 195691746 195691922 -46972431 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 658 22 22 22 chr1 195691922 195692014 -46972339 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 995 134 0 2 chr1 195692024 195692263 -46972090 + AluSx SINE Alu 2 295 -15 2054 100 7 32 chr1 195692888 195693198 -46971155 - AluSc SINE Alu -7 302 1 1161 113 0 0 chr1 195693203 195693371 -46970982 - MER41B LTR ERV1 -467 168 1 398 263 89 98 chr1 195693444 195693668 -46970685 - L2 LINE L2 -32 3240 3019 1022 169 0 91 chr1 195693689 195693895 -46970458 - AluJo SINE Alu -3 309 127 2189 97 0 13 chr1 195693895 195694195 -46970158 + AluSg SINE Alu 1 296 -14 1022 169 0 91 chr1 195694195 195694231 -46970122 - AluJo SINE Alu -185 127 89 2184 81 3 0 chr1 195694267 195694562 -46969791 + AluSp SINE Alu 1 296 -17 247 219 55 0 chr1 195694577 195694650 -46969703 - HAL1b LINE L1 -29 1319 1243 1851 140 0 7 chr1 195694726 195695018 -46969335 + AluSx SINE Alu 1 290 -22 2244 82 10 0 chr1 195695024 195695318 -46969035 + AluSp SINE Alu 1 297 -16 835 109 7 44 chr1 195695347 195695395 -46968958 + AluJo SINE Alu 5 53 -259 3760 103 35 29 chr1 195695395 195695870 -46968483 + MER41A LTR ERV1 1 481 -73 2093 123 16 0 chr1 195695870 195696178 -46968175 - AluSq SINE Alu 0 313 1 3760 103 35 29 chr1 195696178 195696253 -46968100 + MER41A LTR ERV1 481 554 0 835 109 7 44 chr1 195696253 195696341 -46968012 + AluJo SINE Alu 53 136 -176 362 221 195 18 chr1 195696341 195696490 -46967863 + FLAM_A SINE Alu 1 169 0 499 288 113 9 chr1 195696790 195697013 -46967340 - MIR SINE MIR -1 261 17 1787 172 0 0 chr1 195697145 195697447 -46966906 + AluSx SINE Alu 1 302 -10 2254 97 7 0 chr1 195697456 195697766 -46966587 + AluSx SINE Alu 1 312 0 2063 113 3 0 chr1 195697776 195698069 -46966284 + AluSg SINE Alu 1 294 -16 1450 109 0 45 chr1 195698071 195698291 -46966062 + AluSg SINE Alu 1 210 -100 1842 129 21 0 chr1 195698393 195698697 -46965656 - AluSp SINE Alu 0 310 1 4304 85 2 0 chr1 195698725 195699278 -46965075 + MER41A LTR ERV1 1 554 0 1784 160 7 0 chr1 195699421 195699714 -46964639 + AluSq SINE Alu 1 295 -18 2218 92 7 0 chr1 195699758 195700063 -46964290 + AluSp SINE Alu 1 307 -6 34 0 0 0 chr1 195700420 195700454 -46963899 + AT_rich Low_complexity Low_complexity 1 34 0 1830 107 37 37 chr1 195702774 195703073 -46961280 + AluSq SINE Alu 1 299 -14 1219 137 69 137 chr1 195703206 195703423 -46960930 - L1MA8 LINE L1 -1 6290 6060 2124 105 0 13 chr1 195703423 195703737 -46960616 - AluSx SINE Alu 0 312 3 1219 137 69 137 chr1 195703737 195703880 -46960473 - L1MA8 LINE L1 -231 6060 5955 2138 104 3 3 chr1 195703880 195704187 -46960166 - AluSp SINE Alu -6 307 1 1219 137 69 137 chr1 195704187 195704204 -46960149 - L1MA8 LINE L1 -336 5955 5938 466 33 16 0 chr1 195704188 195704249 -46960104 - L1M2 LINE L1 -684 5616 5555 * 1576 252 125 75 chr1 195704288 195704424 -46959929 - L2 LINE L2 0 3313 3185 720 169 8 0 chr1 195704424 195704542 -46959811 + FLAM_C SINE Alu 2 120 -13 1576 252 125 75 chr1 195704542 195704608 -46959745 - L2 LINE L2 -128 3185 3124 2116 113 0 0 chr1 195704608 195704900 -46959453 + AluSp SINE Alu 1 292 -21 1576 252 125 75 chr1 195704900 195705686 -46958667 - L2 LINE L2 -189 3124 2288 2101 101 0 11 chr1 195705686 195706051 -46958302 + AluSx SINE Alu 1 362 0 1576 252 125 75 chr1 195706051 195706079 -46958274 - L2 LINE L2 -1025 2288 2263 23 0 0 0 chr1 195706351 195706374 -46957979 + GC_rich Low_complexity Low_complexity 1 23 0 472 277 102 6 chr1 195706533 195706710 -46957643 + MIR SINE MIR 1 194 -68 1989 104 0 4 chr1 195706715 195706993 -46957360 + AluSc SINE Alu 1 277 -32 962 116 13 0 chr1 195706995 195707150 -46957203 + (GAAA)n Simple_repeat Simple_repeat 2 158 0 2253 96 0 3 chr1 195709002 195709304 -46955049 - AluSc SINE Alu -7 302 2 1420 161 0 0 chr1 195709325 195709555 -46954798 - AluJb SINE Alu -82 230 1 551 275 22 28 chr1 195709556 195709738 -46954615 - MARNA DNA Mariner -37 549 369 293 188 0 0 chr1 195709806 195709854 -46954499 - LTR26 LTR ERV1 0 603 556 1223 130 0 10 chr1 195709855 195710055 -46954298 + AluSq SINE Alu 107 304 -9 479 316 76 6 chr1 195710055 195710213 -46954140 - MIR SINE MIR -92 170 2 258 32 0 0 chr1 195710333 195710364 -46953989 + (T)n Simple_repeat Simple_repeat 1 31 0 2076 110 23 0 chr1 195711697 195711997 -46952356 + AluSx SINE Alu 1 307 -5 3298 219 80 19 chr1 195712006 195712615 -46951738 + L1MC4 LINE L1 5491 6180 -1862 1307 86 83 189 chr1 195712615 195712954 -46951399 + AluSc SINE Alu 1 303 -6 3298 219 80 19 chr1 195712954 195713294 -46951059 + L1MC4 LINE L1 6180 6498 -1544 403 174 128 46 chr1 195713295 195713404 -46950949 + MER21B LTR ERV1 688 805 -58 1958 128 21 0 chr1 195713762 195714052 -46950301 - AluSq SINE Alu -17 296 1 1760 159 10 0 chr1 195714402 195714692 -46949661 + AluJb SINE Alu 1 293 -19 1644 213 3 31 chr1 195715272 195715592 -46948761 + MER45B DNA AcHobo 1 311 -729 3166 125 2 0 chr1 195715593 195716049 -46948304 + MER41B LTR ERV1 2 458 -177 2157 112 16 0 chr1 195716049 195716354 -46947999 + AluSx SINE Alu 1 310 -2 2149 111 0 0 chr1 195716364 195716671 -46947682 + AluSx SINE Alu 1 307 -5 1691 203 67 8 chr1 195716680 195717039 -46947314 + L1MC4 LINE L1 6673 7052 -990 1716 144 76 55 chr1 195717041 195717408 -46946945 - THE1C LTR MaLR 0 375 1 1299 237 25 58 chr1 195717452 195717646 -46946707 + L1MC4 LINE L1 7241 7440 -602 1633 156 11 7 chr1 195717646 195717928 -46946425 + AluSx SINE Alu 2 284 -28 1299 237 25 58 chr1 195717928 195718167 -46946186 + L1MC4 LINE L1 7440 7660 -382 1721 118 0 4 chr1 195718169 195718415 -46945938 - AluSg SINE Alu -12 298 54 329 198 167 56 chr1 195719184 195719247 -46945106 - MER103 DNA DNA -16 150 95 1485 83 10 0 chr1 195719247 195719452 -46944901 + AluSp SINE Alu 107 313 0 329 198 167 56 chr1 195719452 195719514 -46944839 - MER103 DNA DNA -71 95 11 1904 129 10 6 chr1 195719778 195720089 -46944264 + AluSx SINE Alu 1 312 0 1813 139 20 3 chr1 195720393 195720688 -46943665 + AluSx SINE Alu 2 301 -11 320 314 43 21 chr1 195720691 195720831 -46943522 - L2 LINE L2 -3 3310 3168 3610 119 15 6 chr1 195720928 195721450 -46942903 + MER1A DNA MER1_type 1 527 0 2183 88 0 32 chr1 195721450 195721758 -46942595 - AluY SINE Alu -13 298 1 537 305 116 38 chr1 195721796 195722114 -46942239 - L2 LINE L2 -344 2970 2628 663 304 176 46 chr1 195722114 195722472 -46941881 - L2 LINE L2 -874 2440 2130 3858 187 81 27 chr1 195722472 195723290 -46941063 + MER21B LTR ERV1 1 862 -1 663 304 176 46 chr1 195723290 195723494 -46940859 - L2 LINE L2 -1184 2130 1805 1854 134 10 10 chr1 195723843 195724149 -46940204 - AluJb SINE Alu -5 307 2 665 198 115 19 chr1 195724149 195724306 -46940047 + AluJo SINE Alu 122 293 -19 1777 168 3 0 chr1 195724530 195724816 -46939537 + AluJb SINE Alu 1 287 -25 2238 70 7 10 chr1 195725165 195725464 -46938889 + AluSc SINE Alu 1 298 -11 361 234 36 36 chr1 195725466 195725577 -46938776 + FLAM_C SINE Alu 1 111 -22 2413 63 0 0 chr1 195727416 195727719 -46936634 - AluY SINE Alu -8 303 1 289 304 95 25 chr1 195728034 195728192 -46936161 + MIR SINE MIR 29 197 -65 244 299 69 35 chr1 195728243 195728330 -46936023 - MIR SINE MIR -167 95 6 271 311 45 12 chr1 195728359 195728470 -46935883 - MIR SINE MIR -65 143 40 2075 93 0 0 chr1 195728557 195728859 -46935494 + AluSx SINE Alu 14 315 0 2292 90 0 3 chr1 195728916 195729216 -46935137 + AluSg SINE Alu 1 299 -11 1737 165 7 3 chr1 195729220 195729523 -46934830 + AluJb SINE Alu 1 304 -8 773 204 31 6 chr1 195729532 195729694 -46934659 + FAM SINE Alu 1 166 -9 1458 186 4 4 chr1 195729784 195730059 -46934294 - AluJb SINE Alu -23 289 15 364 328 91 15 chr1 195730073 195730271 -46934082 - L1 LINE L1 -1604 4542 4330 334 257 136 29 chr1 195730265 195730405 -46933948 + L1ME LINE L1 5121 5275 -871 * 807 217 51 46 chr1 195730422 195730695 -46933658 - MLT1H1 LTR MaLR 0 555 207 1593 82 0 0 chr1 195730724 195730930 -46933423 - AluSc SINE Alu -8 301 96 2045 113 0 14 chr1 195731472 195731765 -46932588 - AluSx SINE Alu -23 289 1 1943 130 0 10 chr1 195732301 195732594 -46931759 + AluSx SINE Alu 1 290 -22 233 167 0 0 chr1 195733171 195733207 -46931146 - MER57A LTR ERV1 -73 330 295 1830 159 9 29 chr1 195735655 195735970 -46928383 - AluJb SINE Alu -3 309 1 2014 149 0 0 chr1 195736021 195736322 -46928031 + AluSx SINE Alu 1 301 -11 237 264 258 0 chr1 195738196 195738355 -46925998 + L1ME LINE L1 5657 5856 -265 1902 149 0 0 chr1 195738466 195738741 -46925612 + AluSx SINE Alu 1 275 -37 1221 23 0 0 chr1 195738912 195739044 -46925309 - AluY SINE Alu -178 133 2 2111 138 0 7 chr1 195739493 195739797 -46924556 + AluSx SINE Alu 1 302 -10 1296 125 0 10 chr1 195740794 195740986 -46923367 - AluSg/x SINE Alu 0 312 123 253 301 150 0 chr1 195741193 195741306 -46923047 - L2 LINE L2 -60 3253 3124 886 154 0 22 chr1 195741698 195741834 -46922519 - FLAM_C SINE Alu 0 133 1 1961 128 10 10 chr1 195741942 195742246 -46922107 - AluSq SINE Alu -9 304 1 2139 109 13 29 chr1 195743360 195743673 -46920680 + AluSx SINE Alu 1 308 -4 2404 78 3 0 chr1 195743675 195743970 -46920383 + AluSp SINE Alu 4 299 -14 699 229 89 51 chr1 195744108 195744322 -46920031 + MER58A DNA MER1_type 2 223 -1 306 306 119 18 chr1 195744326 195744545 -46919808 + HAL1 LINE L1 1113 1353 -1154 322 303 33 59 chr1 195744748 195744900 -46919453 + L1M4 LINE L1 3634 3781 -2365 29 28 0 0 chr1 195744973 195745009 -46919344 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr1 195745167 195745203 -46919150 + AT_rich Low_complexity Low_complexity 1 36 0 195 42 0 0 chr1 195745206 195745230 -46919123 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 9850 53 8 90 chr1 195745230 195746677 -46917676 + SVA Other Other 59 1386 0 367 293 87 48 chr1 195746741 195746895 -46917458 - L1ME4a LINE L1 -236 5885 5719 2146 116 0 0 chr1 195746895 195747223 -46917130 + AluSq SINE Alu 1 328 0 367 293 87 48 chr1 195747223 195747275 -46917078 - L1ME4a LINE L1 -402 5719 5670 970 127 0 0 chr1 195747591 195747725 -46916628 + AluSq/x SINE Alu 2 135 -177 2350 104 0 13 chr1 195747725 195748041 -46916312 + AluSx SINE Alu 1 312 0 665 236 24 0 chr1 195748491 195748618 -46915735 + FLAM_A SINE Alu 4 133 0 564 321 124 45 chr1 195748624 195748845 -46915508 + L2 LINE L2 2521 2723 -549 2242 121 0 13 chr1 195748845 195749160 -46915193 - AluSx SINE Alu -1 311 1 564 321 124 45 chr1 195749160 195749642 -46914711 + L2 LINE L2 2723 3270 -2 1668 139 3 81 chr1 195750051 195750374 -46913979 + AluJo SINE Alu 1 298 -14 1826 138 22 0 chr1 195750524 195750792 -46913561 - AluJb SINE Alu -16 296 23 277 366 37 15 chr1 195750907 195751041 -46913312 - MIR3 SINE MIR -35 173 37 1973 99 0 89 chr1 195751048 195751361 -46912992 - AluSg SINE Alu -25 285 1 21 0 0 0 chr1 195751513 195751534 -46912819 + AT_rich Low_complexity Low_complexity 1 21 0 764 198 0 0 chr1 195751606 195751727 -46912626 - FLAM_A SINE Alu -12 121 1 22 35 0 0 chr1 195752287 195752316 -46912037 + AT_rich Low_complexity Low_complexity 1 29 0 184 200 0 0 chr1 195752449 195752479 -46911874 + MIR SINE MIR 84 113 -149 2038 90 29 7 chr1 195752886 195753165 -46911188 + AluSx SINE Alu 1 285 -27 1865 174 0 3 chr1 195753257 195753556 -46910797 + AluJb SINE Alu 1 298 -14 25 31 0 0 chr1 195754272 195754304 -46910049 + AT_rich Low_complexity Low_complexity 1 32 0 1948 130 4 7 chr1 195754304 195754444 -46909909 - AluSx SINE Alu -36 276 136 2399 81 10 0 chr1 195754444 195754741 -46909612 - AluSg SINE Alu -10 300 1 1948 130 4 7 chr1 195754741 195754877 -46909476 - AluSx SINE Alu -176 136 1 2150 129 0 0 chr1 195755168 195755463 -46908890 + AluSx SINE Alu 1 295 -17 2022 129 0 7 chr1 195755478 195755772 -46908581 + AluSp SINE Alu 10 301 -12 514 257 26 9 chr1 195756627 195756740 -46907613 + AluSp SINE Alu 42 156 -157 971 209 27 0 chr1 195757384 195757571 -46906782 - MER58A DNA MER1_type -3 221 30 263 326 142 7 chr1 195757697 195757838 -46906515 + MIR SINE MIR 93 252 -10 426 286 197 6 chr1 195758299 195758477 -46905876 + MIR SINE MIR 51 262 0 2485 60 0 7 chr1 195758590 195758888 -46905465 - AluY SINE Alu -15 296 1 1417 276 65 16 chr1 195758973 195759483 -46904870 + L1ME3A LINE L1 5636 6170 0 296 298 30 23 chr1 195759687 195759818 -46904535 + L1ME LINE L1 5455 5586 -535 65 56 0 0 chr1 195759866 195759973 -46904380 + AT_rich Low_complexity Low_complexity 1 107 0 219 36 0 0 chr1 195760073 195760101 -46904252 + (CA)n Simple_repeat Simple_repeat 2 29 0 238 224 17 0 chr1 195760104 195760162 -46904191 + L1MCa LINE L1 2006 2064 -4362 2299 113 0 0 chr1 195760191 195760501 -46903852 - AluSx SINE Alu 0 312 3 2022 141 7 10 chr1 195760513 195760819 -46903534 - AluSq SINE Alu -8 305 1 2142 104 14 0 chr1 195761562 195761859 -46902494 + AluSg SINE Alu 3 303 -7 23 0 0 0 chr1 195762377 195762400 -46901953 + AT_rich Low_complexity Low_complexity 1 23 0 1663 178 3 32 chr1 195762955 195763264 -46901089 - AluJo SINE Alu -12 300 1 210 143 0 0 chr1 195763274 195763309 -46901044 + (TA)n Simple_repeat Simple_repeat 2 36 0 1934 144 0 13 chr1 195764088 195764400 -46899953 + AluSx SINE Alu 1 308 -4 2042 139 3 0 chr1 195764477 195764771 -46899582 + AluSx SINE Alu 1 295 -17 228 235 0 0 chr1 195764775 195764824 -46899529 + L1ME LINE L1 5767 5815 -306 1963 168 41 84 chr1 195764824 195765066 -46899287 + MLT1-int LTR MaLR 1 252 -1119 2240 114 7 0 chr1 195765066 195765363 -46898990 - AluSx SINE Alu -13 299 1 1963 168 41 84 chr1 195765363 195765731 -46898622 + MLT1-int LTR MaLR 252 709 -662 1041 191 72 58 chr1 195765754 195766031 -46898322 + MLT1C LTR MaLR 187 467 0 496 218 158 6 chr1 195766041 195766206 -46898147 + L1MC/D LINE L1 4844 5033 -1113 1282 120 5 0 chr1 195766228 195766412 -46897941 + AluSq SINE Alu 129 313 0 1179 168 56 33 chr1 195766416 195766729 -46897624 + L1MC/D LINE L1 5136 5460 -806 2247 120 0 0 chr1 195766729 195767028 -46897325 + AluSx SINE Alu 5 303 -9 1179 168 56 33 chr1 195767028 195767094 -46897259 + L1MC/D LINE L1 5460 5523 -743 2933 86 0 3 chr1 195767118 195767490 -46896863 + L1PA12 LINE L1 5793 6163 -5 1811 161 16 3 chr1 195767491 195767795 -46896558 + AluSx SINE Alu 1 308 -4 1472 170 0 4 chr1 195767856 195768091 -46896262 + AluSx SINE Alu 61 294 -18 1066 137 0 40 chr1 195768269 195768444 -46895909 - AluSq SINE Alu -9 304 137 2028 104 3 43 chr1 195768444 195768743 -46895610 - AluSq SINE Alu -12 301 15 2426 71 0 0 chr1 195768887 195769182 -46895171 + AluY SINE Alu 1 295 -16 839 168 15 0 chr1 195769330 195769461 -46894892 + FLAM_C SINE Alu 1 133 0 2263 98 7 3 chr1 195769626 195769932 -46894421 - AluSg SINE Alu -3 307 1 2200 109 0 7 chr1 195771316 195771619 -46892734 + AluSg SINE Alu 1 301 -9 2234 109 3 0 chr1 195771662 195771955 -46892398 + AluSq SINE Alu 1 294 -19 204 213 0 0 chr1 195771977 195772024 -46892329 + GA-rich Low_complexity Low_complexity 1 47 0 531 298 60 48 chr1 195772221 195772657 -46891696 + HAL1 LINE L1 1239 1679 -828 1856 176 0 0 chr1 195772750 195773046 -46891307 + AluJb SINE Alu 1 296 -16 1261 163 5 18 chr1 195773048 195773269 -46891084 + AluJo SINE Alu 87 304 -8 885 211 0 0 chr1 195773340 195773506 -46890847 + FRAM SINE Alu 1 164 -12 639 162 111 34 chr1 195773617 195773734 -46890619 + FLAM_C SINE Alu 1 126 -7 2158 120 3 7 chr1 195774189 195774498 -46889855 + AluSx SINE Alu 1 308 -4 2109 84 38 3 chr1 195775361 195775648 -46888705 + AluSg SINE Alu 1 297 -13 2243 119 0 19 chr1 195775819 195776138 -46888215 + AluSq SINE Alu 1 313 0 2476 57 3 3 chr1 195776340 195776638 -46887715 + AluY SINE Alu 1 298 -13 1625 189 7 10 chr1 195776886 195777183 -46887170 + AluJo SINE Alu 1 296 -16 2120 138 3 0 chr1 195777300 195777612 -46886741 + AluSq SINE Alu 1 313 0 245 50 0 25 chr1 195778036 195778076 -46886277 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr1 195778145 195778173 -46886180 + AT_rich Low_complexity Low_complexity 1 28 0 181 296 99 0 chr1 195779318 195779389 -46884964 - MIR3 SINE MIR -1 207 130 22 0 0 0 chr1 195779660 195779682 -46884671 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 195780068 195780092 -46884261 + AT_rich Low_complexity Low_complexity 1 24 0 429 240 182 8 chr1 195783517 195783638 -46880715 - MIR3 SINE MIR -51 157 16 212 313 25 0 chr1 195785749 195785829 -46878524 - L3b LINE CR1 -352 1231 1150 533 151 0 65 chr1 195786059 195786152 -46878201 - AluJ/FLAM SINE Alu -224 88 2 571 218 0 16 chr1 195786880 195787004 -46877349 + AluJb SINE Alu 134 255 -57 180 297 14 14 chr1 195787565 195787639 -46876714 + MIR SINE MIR 172 245 -17 414 297 31 62 chr1 195787948 195787979 -46876374 - L1ME4a LINE L1 0 6121 6091 2270 97 3 0 chr1 195787979 195788287 -46876066 + AluSc SINE Alu 1 309 0 414 297 31 62 chr1 195788287 195788450 -46875903 - L1ME4a LINE L1 -30 6091 5933 195 162 0 0 chr1 195788833 195788870 -46875483 + T-rich Low_complexity Low_complexity 1 37 0 364 198 19 75 chr1 195789049 195789155 -46875198 - HsTC2 DNA Tc2 -2 1896 1797 1824 126 4 0 chr1 195789155 195789418 -46874935 + AluSg SINE Alu 1 264 -46 404 241 26 75 chr1 195789469 195789561 -46874792 - L1MC4a LINE L1 -211 5910 5815 1897 99 4 0 chr1 195789561 195789823 -46874530 - AluSp SINE Alu -7 306 44 404 241 26 75 chr1 195789823 195789931 -46874422 - L1MC4a LINE L1 -306 5815 5716 1853 126 7 0 chr1 195789992 195790285 -46874068 + AluSx SINE Alu 9 303 -9 342 194 21 0 chr1 195790606 195790699 -46873654 - MER69 DNA AcHobo -64 2462 2368 1971 132 7 7 chr1 195790712 195791022 -46873331 + AluSx SINE Alu 1 310 -2 286 188 0 29 chr1 195791030 195791099 -46873254 - MER69 DNA AcHobo -452 2074 2008 2391 186 72 29 chr1 195791155 195791665 -46872688 - MLT1F LTR MaLR -8 534 3 2236 94 7 0 chr1 195791713 195792020 -46872333 + AluSx SINE Alu 1 309 -3 2020 97 0 75 chr1 195792032 195792352 -46872001 + AluSx SINE Alu 1 296 -16 1821 235 180 0 chr1 195792364 195792836 -46871517 - MER69 DNA AcHobo -1961 565 9 2027 99 3 11 chr1 195793053 195793364 -46870989 - AluSq SINE Alu 0 309 1 1990 185 32 19 chr1 195793634 195794007 -46870346 + MER6A DNA MER2_type 6 383 -222 786 181 94 0 chr1 195794007 195794167 -46870186 - FAM SINE Alu 0 175 1 970 77 0 49 chr1 195794167 195794195 -46870158 - AluSq/x SINE Alu -176 136 108 3511 53 0 49 chr1 195794195 195794306 -46870047 + MLT2A1 LTR ERVL 1 116 -328 2424 68 3 0 chr1 195794306 195794616 -46869737 + AluY SINE Alu 1 311 0 3511 53 0 49 chr1 195794616 195794971 -46869382 + MLT2A1 LTR ERVL 116 444 0 970 77 0 49 chr1 195794971 195795085 -46869268 - AluSq/x SINE Alu -204 108 1 443 112 0 122 chr1 195795085 195795183 -46869170 + MER6A DNA MER2_type 370 455 -150 1062 197 0 35 chr1 195795183 195795411 -46868942 + AluJo SINE Alu 87 306 -6 895 168 7 7 chr1 195795414 195795569 -46868784 + MER6A DNA MER2_type 451 605 0 372 111 37 0 chr1 195795577 195795631 -46868722 - Alu SINE Alu -12 290 235 1875 113 3 3 chr1 195795731 195796013 -46868340 - AluSp SINE Alu -23 290 9 1423 130 4 57 chr1 195796061 195796307 -46868046 + AluSg SINE Alu 61 293 -17 489 198 28 0 chr1 195796311 195796417 -46867936 - Charlie8 DNA MER1_type -2236 181 73 200 304 0 0 chr1 195796513 195796559 -46867794 - L2 LINE L2 -219 3053 3008 1652 126 123 58 chr1 195796592 195796934 -46867419 - THE1B LTR MaLR 0 364 1 609 278 79 19 chr1 195797537 195797753 -46866600 - MIR SINE MIR -2 260 32 1891 161 3 0 chr1 195797833 195798138 -46866215 - AluSx SINE Alu -6 306 1 193 226 36 36 chr1 195798138 195798222 -46866131 + L2 LINE L2 2023 2106 -1208 1691 169 0 17 chr1 195798237 195798538 -46865815 - AluJb SINE Alu -16 296 1 261 0 0 0 chr1 195798560 195798589 -46865764 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 1527 235 3 19 chr1 195798589 195798968 -46865385 + L1M4 LINE L1 2326 2698 -3448 2046 130 3 0 chr1 195799296 195799596 -46864757 + AluSq SINE Alu 9 309 -4 2183 110 0 0 chr1 195799657 195799967 -46864386 - AluY SINE Alu -1 310 1 596 175 0 21 chr1 195800100 195800197 -46864156 + MLT1D LTR MaLR 1 95 -410 1576 112 0 0 chr1 195800198 195800412 -46863941 + AluSx SINE Alu 1 214 -98 454 123 74 0 chr1 195800412 195800493 -46863860 - MLT1D LTR MaLR -333 172 86 469 87 0 14 chr1 195800493 195800562 -46863791 - Alu SINE Alu -17 294 227 1110 122 31 142 chr1 195800729 195800814 -46863539 - MER45B DNA AcHobo -541 1040 947 2212 105 3 0 chr1 195800814 195801120 -46863233 + AluSx SINE Alu 1 307 -5 2386 57 0 3 chr1 195801122 195801419 -46862934 + AluY SINE Alu 1 296 -15 1110 122 31 142 chr1 195801419 195801468 -46862885 - MER45B DNA AcHobo -635 946 893 1373 129 12 62 chr1 195801468 195801659 -46862694 - MER30 DNA MER1_type 0 230 52 2006 132 3 0 chr1 195801659 195801969 -46862384 - AluSq SINE Alu -2 311 1 1373 129 12 62 chr1 195801969 195802018 -46862335 - MER30 DNA MER1_type -178 52 2 1110 122 31 142 chr1 195802018 195802032 -46862321 - MER45B DNA AcHobo -688 893 879 2446 50 0 22 chr1 195802032 195802349 -46862004 - AluY SINE Alu -1 310 1 1110 122 31 142 chr1 195802349 195802418 -46861935 - MER45B DNA AcHobo -702 879 855 2241 97 0 0 chr1 195802418 195802717 -46861636 - AluSq SINE Alu -14 299 1 1110 122 31 142 chr1 195802717 195802781 -46861572 - MER45B DNA AcHobo -726 855 785 27 0 0 0 chr1 195802784 195802811 -46861542 + AT_rich Low_complexity Low_complexity 1 27 0 35 54 0 0 chr1 195802918 195802974 -46861379 + AT_rich Low_complexity Low_complexity 1 56 0 340 173 0 0 chr1 195802980 195803032 -46861321 + MER66A LTR ERV1 287 338 -140 226 211 308 0 chr1 195803350 195803454 -46860899 - L1ME4a LINE L1 0 6121 5986 2035 102 37 3 chr1 195803559 195803854 -46860499 + AluSx SINE Alu 2 306 -6 2198 189 125 62 chr1 195803934 195804185 -46860168 + MER82 DNA MER2_type 1 235 -418 2258 82 16 7 chr1 195804185 195804488 -46859865 - AluSx SINE Alu -6 306 1 2198 189 125 62 chr1 195804488 195804850 -46859503 + MER82 DNA MER2_type 235 653 0 2074 105 6 13 chr1 195804986 195805299 -46859054 - AluSx SINE Alu -1 311 1 512 274 72 31 chr1 195805319 195805542 -46858811 - L1MC4a LINE L1 -1907 5901 5670 1717 256 33 37 chr1 195805609 195806097 -46858256 + MER68 LTR ERV1 2 487 -75 516 230 34 34 chr1 195807041 195807189 -46857164 + L1MC4a LINE L1 6435 6582 -1226 1887 104 0 0 chr1 195857193 195857434 -46806919 + AluSg/x SINE Alu 70 310 0 183 42 0 0 chr1 195857443 195857467 -46806886 + (CAAG)n Simple_repeat Simple_repeat 1 24 0 2356 115 0 3 chr1 195858832 195859146 -46805207 + AluSq SINE Alu 1 313 0 2134 133 3 16 chr1 195859165 195859482 -46804871 + AluSq SINE Alu 1 313 0 289 271 94 0 chr1 195859559 195859655 -46804698 + MIR3 SINE MIR 98 202 -6 2205 138 44 60 chr1 195860051 195860405 -46803948 + MSTA LTR MaLR 1 349 -79 2317 75 0 0 chr1 195860405 195860708 -46803645 + AluSc SINE Alu 1 303 0 2205 138 44 60 chr1 195860708 195860787 -46803566 + MSTA LTR MaLR 349 428 0 235 191 0 0 chr1 195861016 195861063 -46803290 + Alu SINE Alu 253 299 -1 188 67 33 0 chr1 195861438 195861468 -46802885 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 464 288 26 21 chr1 195862634 195862774 -46801579 - MIR SINE MIR -23 239 96 2426 110 39 14 chr1 195862774 195863129 -46801224 - THE1B LTR MaLR 0 364 1 464 288 26 21 chr1 195863129 195863179 -46801174 - MIR SINE MIR -166 96 48 1846 150 6 75 chr1 195863377 195863587 -46800766 - MLT1A2 LTR MaLR -21 484 261 2129 141 3 0 chr1 195863587 195863892 -46800461 - AluSx SINE Alu -6 306 1 1846 150 6 75 chr1 195863892 195864062 -46800291 - MLT1A2 LTR MaLR -244 261 1 245 351 86 0 chr1 195864145 195864296 -46800057 - MIR3 SINE MIR -15 193 30 989 74 28 11 chr1 195864970 195865146 -46799207 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 454 250 209 47 chr1 195865146 195865285 -46799068 + MER63A DNA MER1_type 44 210 0 216 310 18 82 chr1 195865500 195865671 -46798682 - MIR SINE MIR -45 217 58 6057 17 0 8 chr1 195865793 195866437 -46797916 + SVA Other Other 748 1386 0 1978 78 0 4 chr1 195866585 195866829 -46797524 + AluY SINE Alu 54 296 -15 1248 280 56 36 chr1 195866839 195867330 -46797023 + L1ME3A LINE L1 4944 5424 -746 2339 107 0 0 chr1 195867330 195867630 -46796723 - AluSx SINE Alu -12 300 1 1248 280 56 36 chr1 195867630 195867644 -46796709 + L1ME3A LINE L1 5424 5436 -734 240 35 0 0 chr1 195867644 195867673 -46796680 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1761 171 0 4 chr1 195867677 195867957 -46796396 - AluJo SINE Alu -33 279 1 1248 280 56 36 chr1 195867957 195868435 -46795918 + L1ME3A LINE L1 5438 5948 -222 2128 117 3 0 chr1 195868500 195868791 -46795562 + AluSg SINE Alu 17 308 -2 189 256 0 0 chr1 195869057 195869139 -46795214 + GA-rich Low_complexity Low_complexity 3 84 0 2266 119 0 0 chr1 195869330 195869632 -46794721 + AluSx SINE Alu 1 302 -10 13738 130 28 38 chr1 195869632 195871043 -46793310 - Tigger2 DNA MER2_type -446 2272 890 1960 128 0 64 chr1 195871043 195871372 -46792981 + AluSg SINE Alu 1 308 -2 13738 130 28 38 chr1 195871372 195872254 -46792099 - Tigger2 DNA MER2_type -1828 890 1 228 163 0 20 chr1 195872254 195872300 -46792053 + MLT2B2 LTR ERVL 471 515 0 2039 228 39 45 chr1 195872574 195873065 -46791288 + MLT1F LTR MaLR 1 488 -54 2047 160 0 0 chr1 195873247 195873554 -46790799 - AluJb SINE Alu -5 307 1 2173 114 0 29 chr1 195873578 195873886 -46790467 + AluSx SINE Alu 1 299 -13 2318 117 0 3 chr1 195873898 195874205 -46790148 + AluSx SINE Alu 1 306 -6 415 298 79 38 chr1 195874253 195874366 -46789987 + L1M4 LINE L1 2262 2369 -3777 1623 196 0 39 chr1 195874366 195874678 -46789675 + AluJo SINE Alu 1 300 -12 415 298 79 38 chr1 195874678 195874906 -46789447 + L1M4 LINE L1 2369 2617 -3529 2047 72 111 7 chr1 195874996 195875275 -46789078 + AluSc SINE Alu 1 308 -1 802 166 0 28 chr1 195875367 195875512 -46788841 + FLAM_C SINE Alu 1 141 -2 2124 129 0 0 chr1 195875851 195876145 -46788208 + AluSx SINE Alu 1 294 -18 2449 87 0 0 chr1 195876498 195876807 -46787546 + AluY SINE Alu 1 309 -2 395 174 111 83 chr1 195876832 195876976 -46787377 - HsTC2 DNA Tc2 -17 1881 1734 1282 149 0 51 chr1 195877056 195877136 -46787217 - AluJo SINE Alu -108 204 121 2045 130 3 0 chr1 195877136 195877429 -46786924 - AluJb SINE Alu -18 294 1 1282 149 0 51 chr1 195877429 195877563 -46786790 - AluJo SINE Alu -191 121 1 1296 202 51 9 chr1 195877573 195877959 -46786394 - HsTC2 DNA Tc2 -175 1723 1281 451 227 125 0 chr1 195877970 195878098 -46786255 - HsTC2 DNA Tc2 -1751 147 4 241 321 39 75 chr1 195878404 195878709 -46785644 + L1MEd LINE L1 457 750 -5369 440 100 0 0 chr1 195878712 195878772 -46785581 + AluJ/FLAM SINE Alu 2 61 -251 759 179 102 124 chr1 195878913 195879062 -46785291 + MLT1B LTR MaLR 22 164 -226 2375 105 0 0 chr1 195879062 195879375 -46784978 + AluSq SINE Alu 1 313 0 759 179 102 124 chr1 195879375 195879499 -46784854 + MLT1B LTR MaLR 164 289 -101 431 183 73 0 chr1 195879499 195879581 -46784772 + AluJb SINE Alu 206 293 -19 398 234 210 0 chr1 195879581 195879748 -46784605 + MER69 DNA AcHobo 1794 1995 -531 1799 148 4 0 chr1 195879853 195880131 -46784222 - AluSg SINE Alu -31 279 1 1912 166 63 92 chr1 195880132 195880353 -46784000 + MER69 DNA AcHobo 2001 2227 -299 2047 170 0 0 chr1 195880353 195880665 -46783688 + AluJb SINE Alu 1 312 0 1912 166 63 92 chr1 195880665 195880985 -46783368 + MER69 DNA AcHobo 2227 2526 0 240 263 38 12 chr1 195881660 195881740 -46782613 - MER21B LTR ERV1 -168 695 614 479 198 78 17 chr1 195881747 195881863 -46782490 - MER77 LTR ERV1 -7 598 476 3154 162 50 5 chr1 195881863 195882467 -46781886 + L1MB2 LINE L1 5540 6170 -1 2375 91 3 0 chr1 195882470 195882767 -46781586 + AluSp SINE Alu 1 298 -15 315 119 83 71 chr1 195882787 195882871 -46781482 - MER53 DNA DNA -81 108 24 * 363 122 95 0 chr1 195882808 195882882 -46781471 + MER53 DNA DNA 108 188 -1 228 222 19 0 chr1 195882910 195882964 -46781389 + (CA)n Simple_repeat Simple_repeat 2 56 0 2229 103 3 3 chr1 195883393 195883685 -46780668 - AluSg SINE Alu -18 292 1 21 71 0 0 chr1 195883829 195883871 -46780482 + AT_rich Low_complexity Low_complexity 1 42 0 361 190 16 124 chr1 195884028 195884149 -46780204 + MLT1F1 LTR MaLR 1 101 -441 2098 100 34 0 chr1 195884184 195884475 -46779878 - AluSq SINE Alu -12 301 1 1864 165 185 13 chr1 195884476 195884870 -46779483 + MLT1F1 LTR MaLR 98 559 -8 2158 93 7 4 chr1 195884920 195885227 -46779126 - AluSx SINE Alu 0 308 1 219 376 104 0 chr1 195885685 195885810 -46778543 + L2 LINE L2 3176 3313 0 200 184 0 0 chr1 195885818 195885856 -46778497 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 458 256 50 0 chr1 195885871 195885992 -46778361 + MIR3 SINE MIR 81 207 -1 1419 241 30 16 chr1 195886032 195886566 -46777787 + L1ME1 LINE L1 3106 3671 -2475 2092 114 0 49 chr1 195886579 195886726 -46777627 + AluSx SINE Alu 1 127 -185 2046 84 31 0 chr1 195886726 195886987 -46777366 + AluSp SINE Alu 37 305 -8 1229 153 0 28 chr1 195886932 195887147 -46777206 + AluSg/x SINE Alu 83 291 -19 2092 114 0 49 chr1 195886987 195887147 -46777206 + AluSx SINE Alu 127 293 -19 912 111 0 22 chr1 195887354 195887489 -46776864 - FLAM_C SINE Alu -1 132 1 2456 83 7 0 chr1 195887500 195887800 -46776553 - AluSx SINE Alu -10 302 1 654 217 17 56 chr1 195887801 195887981 -46776372 + L1ME1 LINE L1 4195 4367 -1779 608 244 136 42 chr1 195888014 195888149 -46776204 + MER6 DNA MER2_type 305 426 -439 2424 78 0 7 chr1 195888149 195888458 -46775895 - AluY SINE Alu -4 307 1 608 244 136 42 chr1 195888458 195888521 -46775832 + MER6 DNA MER2_type 426 482 -383 1969 147 3 0 chr1 195888521 195888806 -46775547 - AluSx SINE Alu -26 286 1 608 244 136 42 chr1 195888806 195888869 -46775484 + MER6 DNA MER2_type 482 538 -327 2017 140 3 0 chr1 195888869 195889154 -46775199 - AluSx SINE Alu -26 286 1 608 244 136 42 chr1 195889154 195889184 -46775169 + MER6 DNA MER2_type 538 564 -301 1763 142 44 18 chr1 195889184 195889459 -46774894 - AluJo SINE Alu -30 282 1 608 244 136 42 chr1 195889459 195889525 -46774828 + MER6 DNA MER2_type 564 699 -166 641 105 11 0 chr1 195889542 195889637 -46774716 - MLT2B3 LTR ERVL -456 98 3 2433 66 3 13 chr1 195889659 195889964 -46774389 - AluSp SINE Alu -11 302 1 2886 195 39 11 chr1 195889964 195890614 -46773739 + L1ME1 LINE L1 4535 5202 -944 1011 165 0 0 chr1 195890615 195890773 -46773580 + FRAM SINE Alu 1 158 -18 2376 104 3 0 chr1 195890785 195891094 -46773259 + AluSx SINE Alu 1 310 -2 2293 196 56 120 chr1 195891115 195891227 -46773126 + L1ME1 LINE L1 5202 5320 -850 2102 122 0 21 chr1 195891227 195891535 -46772818 - AluSx SINE Alu 0 302 1 2293 196 56 120 chr1 195891535 195891626 -46772727 + L1ME1 LINE L1 5320 5415 -755 2259 40 0 4 chr1 195891626 195891900 -46772453 + L1PA4 LINE L1 5883 6155 0 2293 196 56 120 chr1 195891900 195892001 -46772352 + L1ME1 LINE L1 5415 5521 -649 1868 158 0 0 chr1 195892001 195892286 -46772067 + AluJo SINE Alu 1 285 -27 1782 91 22 40 chr1 195892286 195892464 -46771889 + L1PA10 LINE L1 5881 6054 -114 2226 112 0 3 chr1 195892464 195892760 -46771593 + AluSg SINE Alu 1 295 -15 1782 91 22 40 chr1 195892760 195892855 -46771498 + L1PA10 LINE L1 6054 6149 -19 225 0 0 0 chr1 195892855 195892880 -46771473 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 2293 196 56 120 chr1 195892880 195893066 -46771287 + L1ME1 LINE L1 5519 5715 -455 2060 128 0 35 chr1 195893066 195893385 -46770968 - AluJb SINE Alu -4 308 1 2293 196 56 120 chr1 195893385 195893487 -46770866 + L1ME1 LINE L1 5715 5822 -348 2210 106 0 7 chr1 195893487 195893780 -46770573 - AluSx SINE Alu -21 291 1 2293 196 56 120 chr1 195893780 195894216 -46770137 + L1ME1 LINE L1 5822 6114 -56 1581 184 45 0 chr1 195894216 195894335 -46770018 + AluJo SINE Alu 1 113 -199 207 0 0 0 chr1 195894335 195894358 -46769995 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1581 184 45 0 chr1 195894358 195894526 -46769827 + AluJo SINE Alu 113 301 -11 2293 196 56 120 chr1 195894526 195894577 -46769776 + L1ME1 LINE L1 6114 6167 -3 629 264 21 38 chr1 195894855 195895130 -46769223 - L1MEd LINE L1 -4862 1257 1060 606 289 91 80 chr1 195895204 195895549 -46768804 - L1MEd LINE L1 -5088 1031 676 2377 103 0 0 chr1 195895549 195895860 -46768493 - AluSx SINE Alu -1 311 1 606 289 91 80 chr1 195895860 195896051 -46768302 - L1MEd LINE L1 -5443 676 489 1980 218 34 79 chr1 195896056 195896624 -46767729 - MLT1F LTR MaLR 0 542 1 2425 87 0 3 chr1 195896806 195897118 -46767235 + AluSq SINE Alu 1 311 -2 2066 146 0 9 chr1 195897358 195897673 -46766680 - AluJb SINE Alu 0 312 1 307 346 6 25 chr1 195897869 195898028 -46766325 - L1 LINE L1 -3121 3025 2870 2232 85 0 14 chr1 195898046 195898341 -46766012 + AluSg SINE Alu 1 291 -19 26 0 0 0 chr1 195898345 195898371 -46765982 + AT_rich Low_complexity Low_complexity 1 26 0 231 267 67 29 chr1 195898571 195898676 -46765677 - L1MC4a LINE L1 -1870 5938 5830 265 341 132 0 chr1 195898826 195898955 -46765398 + HERVL LTR ERVL 2331 2476 -3178 1580 157 0 101 chr1 195899043 195899388 -46764965 + AluJo SINE Alu 1 310 -2 3439 269 84 40 chr1 195899452 195900065 -46764288 + L1MEc LINE L1 202 787 -5776 767 172 0 0 chr1 195900065 195900181 -46764172 + FLAM_C SINE Alu 1 116 -17 207 0 0 0 chr1 195900185 195900208 -46764145 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3439 269 84 40 chr1 195900208 195900446 -46763907 + L1MEc LINE L1 789 1015 -5548 1520 199 34 24 chr1 195900446 195900738 -46763615 + AluJo SINE Alu 1 295 -17 3439 269 84 40 chr1 195900738 195900864 -46763489 + L1MEc LINE L1 1015 1134 -5429 1577 199 43 51 chr1 195900864 195900932 -46763421 - MLT1B LTR MaLR -2 388 321 2064 161 0 0 chr1 195900932 195901237 -46763116 - AluJb SINE Alu -7 305 1 1577 199 43 51 chr1 195901237 195901559 -46762794 - MLT1B LTR MaLR -69 321 1 3439 269 84 40 chr1 195901559 195901798 -46762555 + L1MEc LINE L1 1134 1361 -5202 2082 152 0 3 chr1 195901798 195902094 -46762259 + AluSx SINE Alu 1 295 -17 3439 269 84 40 chr1 195902094 195902484 -46761869 + L1MEc LINE L1 1361 1887 -4676 2333 155 73 79 chr1 195903010 195903602 -46760751 - LTR4 LTR ERV1 0 588 1 200 94 31 0 chr1 195904304 195904336 -46760017 + GA-rich Low_complexity Low_complexity 1 33 0 2389 84 0 3 chr1 195905283 195905581 -46758772 - AluSc SINE Alu -12 297 1 2709 45 0 3 chr1 195905591 195905902 -46758451 - AluY SINE Alu -1 310 1 2060 131 24 0 chr1 195906109 195906400 -46757953 + AluSg SINE Alu 1 298 -12 1133 218 51 88 chr1 195906405 195906503 -46757850 + L1MEc LINE L1 1929 2029 -4534 1987 120 21 14 chr1 195906503 195906794 -46757559 + AluSg SINE Alu 1 293 -17 1133 218 51 88 chr1 195906794 195907228 -46757125 + L1MEc LINE L1 2029 2441 -4122 2286 107 10 0 chr1 195907243 195907551 -46756802 + AluSp SINE Alu 1 311 -2 321 246 2 42 chr1 195907551 195907665 -46756688 + L1MEc LINE L1 2398 2484 -3900 324 244 12 0 chr1 195907757 195907839 -46756514 + L1MEc LINE L1 2523 2605 -3958 3576 209 48 67 chr1 195907854 195908824 -46755529 + L1M4 LINE L1 14 1001 -5541 1145 145 25 42 chr1 195908824 195909065 -46755288 + L1MA8 LINE L1 6055 6291 0 3576 209 48 67 chr1 195909065 195909169 -46755184 + L1M4 LINE L1 1001 1105 -5437 530 235 0 17 chr1 195909169 195909311 -46755042 + FLAM_A SINE Alu 1 140 0 3576 209 48 67 chr1 195909311 195909647 -46754706 + L1M4 LINE L1 1105 1711 -4831 1296 193 49 34 chr1 195909659 195909924 -46754429 + AluJo SINE Alu 13 281 -31 252 0 0 0 chr1 195909930 195909958 -46754395 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1277 183 24 48 chr1 195909969 195910077 -46754276 + L1M4 LINE L1 1713 1822 -4824 2300 100 10 0 chr1 195910077 195910376 -46753977 + AluSp SINE Alu 1 302 -11 1277 183 24 48 chr1 195910376 195910556 -46753797 + L1M4 LINE L1 1822 1994 -4652 2339 196 19 87 chr1 195910571 195910637 -46753716 + L1M4 LINE L1 2608 2677 -3967 2188 129 3 0 chr1 195910637 195910940 -46753413 + AluSq SINE Alu 1 304 -9 2339 196 19 87 chr1 195910940 195911562 -46752791 + L1M4 LINE L1 2677 3249 -3395 11516 141 42 48 chr1 195911562 195912720 -46751633 - MER57-int LTR ERV1 -615 6922 5759 1112 39 0 15 chr1 195912720 195912850 -46751503 + AluY SINE Alu 1 128 -183 11516 141 42 48 chr1 195912850 195914153 -46750200 - MER57-int LTR ERV1 -1778 5759 1982 1725 145 0 4 chr1 195914155 195914404 -46749949 + AluSx SINE Alu 1 248 -64 21 0 0 0 chr1 195914505 195914526 -46749827 + AT_rich Low_complexity Low_complexity 1 21 0 300 266 50 101 chr1 195914555 195914741 -46749612 - L1M4 LINE L1 -1396 4750 4581 2079 146 7 3 chr1 195914741 195915043 -46749310 - AluSx SINE Alu -7 305 3 300 266 50 101 chr1 195915043 195915134 -46749219 - L1M4 LINE L1 -1565 4581 4487 2391 80 3 0 chr1 195915340 195915629 -46748724 - AluSp SINE Alu -23 290 1 1905 237 113 33 chr1 195915679 195916290 -46748063 + MLT2F LTR ERVL 1 660 -3 206 200 44 0 chr1 195916614 195916659 -46747694 + L2 LINE L2 3263 3309 -4 250 238 119 12 chr1 195916854 195916938 -46747415 - MIR3 SINE MIR -49 159 67 316 289 108 90 chr1 195917034 195917132 -46747221 + L3 LINE CR1 572 667 -910 434 100 0 38 chr1 195917132 195917212 -46747141 - L1PA13 LINE L1 0 6163 6087 316 289 108 90 chr1 195917212 195917228 -46747125 + L3 LINE CR1 667 681 -896 2293 114 0 3 chr1 195917228 195917535 -46746818 - AluSx SINE Alu -6 306 1 316 289 108 90 chr1 195917535 195917762 -46746591 + L3 LINE CR1 681 920 -657 1094 167 0 0 chr1 195917786 195917954 -46746399 - AluJb SINE Alu -16 296 129 1281 176 36 0 chr1 195917977 195918106 -46746247 + AluJo SINE Alu 1 143 -169 2317 113 0 0 chr1 195918106 195918408 -46745945 + AluSx SINE Alu 1 302 -10 1281 176 36 0 chr1 195918408 195918500 -46745853 + AluJo SINE Alu 143 230 -82 234 0 0 0 chr1 195918516 195918542 -46745811 + (A)n Simple_repeat Simple_repeat 1 26 0 2567 71 3 0 chr1 195918542 195918852 -46745501 + AluY SINE Alu 1 311 0 2048 144 3 3 chr1 195919346 195919644 -46744709 + AluSx SINE Alu 1 298 -14 2455 121 137 30 chr1 195919735 195920055 -46744298 - Tigger3(Golem) DNA MER2_type 0 3029 2745 218 81 27 0 chr1 195920055 195920092 -46744261 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 2455 121 137 30 chr1 195920092 195920148 -46744205 - Tigger3(Golem) DNA MER2_type -284 2745 2696 2147 124 0 25 chr1 195920148 195920463 -46743890 + AluSx SINE Alu 1 307 -5 2455 121 137 30 chr1 195920463 195920524 -46743829 - Tigger3(Golem) DNA MER2_type -333 2696 2544 301 282 19 19 chr1 195920645 195920748 -46743605 + L1MEc LINE L1 284 386 -6010 1895 197 26 18 chr1 195920777 195920790 -46743563 + LTR37B LTR ERV1 5 16 -452 2233 114 20 0 chr1 195920790 195921096 -46743257 + AluSx SINE Alu 1 312 0 1895 197 26 18 chr1 195921096 195921539 -46742814 + LTR37B LTR ERV1 16 465 -3 4802 136 26 54 chr1 195921796 195923095 -46741258 + pTR5 LTR ERV1 743 2295 -143 2036 109 14 7 chr1 195923283 195923576 -46740777 + AluSc SINE Alu 1 295 -14 2186 114 7 13 chr1 195923901 195924208 -46740145 + AluSx SINE Alu 1 305 -7 859 258 27 98 chr1 195924491 195924672 -46739681 - MLT1J LTR MaLR -17 494 351 2161 124 3 13 chr1 195924672 195924987 -46739366 - AluSx SINE Alu 0 312 1 859 258 27 98 chr1 195924987 195925174 -46739179 - MLT1J LTR MaLR -160 351 152 412 245 81 79 chr1 195925208 195925310 -46739043 - MLT1J LTR MaLR -281 189 100 2190 84 39 0 chr1 195925310 195925596 -46738757 - AluSp SINE Alu -16 297 1 412 245 81 79 chr1 195925596 195925697 -46738656 - MLT1J LTR MaLR -370 100 1 301 364 8 8 chr1 195925756 195925885 -46738468 + L2 LINE L2 3185 3313 0 1128 224 5 0 chr1 195926040 195926259 -46738094 - AluJo SINE Alu -92 220 1 234 228 235 31 chr1 195926290 195926452 -46737901 - L2 LINE L2 -858 2456 2262 1984 150 3 3 chr1 195927041 195927341 -46737012 + AluJb SINE Alu 1 300 -12 226 246 35 0 chr1 195927362 195927419 -46736934 - MLT1J LTR MaLR -44 467 409 705 179 50 0 chr1 195927469 195927609 -46736744 - MER69 DNA AcHobo 0 2526 2380 257 118 118 59 chr1 195927721 195927772 -46736581 - MER69 DNA AcHobo -2472 54 1 298 377 52 7 chr1 195927838 195927992 -46736361 + L3 LINE CR1 1292 1452 -125 300 306 71 29 chr1 195928097 195928267 -46736086 + MIR SINE MIR 17 146 -62 300 264 45 65 chr1 195928394 195928549 -46735804 + AluSc SINE Alu 147 298 -1 3841 112 30 77 chr1 195928718 195928842 -46735511 - MER57B-int LTR ERV1 -3109 2837 2709 2184 119 3 0 chr1 195928842 195929136 -46735217 - AluSx SINE Alu -16 296 2 3841 112 30 77 chr1 195929136 195929715 -46734638 - MER57B-int LTR ERV1 -3237 2709 2167 865 98 158 0 chr1 195929711 195929844 -46734509 - MER57B-int LTR ERV1 -4908 2629 2476 * 3602 132 41 22 chr1 195929844 195930548 -46733805 - MER57B-int LTR ERV1 -4377 2064 632 483 108 0 0 chr1 195930539 195930604 -46733749 - MER57B-int LTR ERV1 -6127 1410 1346 * 1294 68 11 17 chr1 195930598 195930774 -46733579 - MER57B-int LTR ERV1 -6570 967 793 * 4540 123 33 3 chr1 195930771 195931429 -46732924 - MER57B-int LTR ERV1 -6859 678 1 2810 123 24 0 chr1 195931429 195931853 -46732500 - MER57B LTR ERV1 0 434 1 45 34 0 0 chr1 195931880 195931939 -46732414 + AT_rich Low_complexity Low_complexity 1 59 0 241 215 169 0 chr1 195932039 195932104 -46732249 - MER58A DNA MER1_type -28 79 4 442 313 143 27 chr1 195932121 195932460 -46731893 + L2 LINE L2 2252 2665 -649 2532 183 20 28 chr1 195932460 195932652 -46731701 + MLT1D LTR MaLR 1 193 -312 1991 92 89 7 chr1 195932652 195932923 -46731430 + AluSq SINE Alu 1 293 -20 2532 183 20 28 chr1 195932923 195933239 -46731114 + MLT1D LTR MaLR 193 505 0 442 313 143 27 chr1 195933239 195933381 -46730972 + L2 LINE L2 2665 2789 -525 317 309 145 22 chr1 195933463 195933732 -46730621 + L2 LINE L2 2952 3253 -19 413 165 181 15 chr1 195934652 195934785 -46729568 - L1ME3A LINE L1 -273 5897 5743 1257 167 126 63 chr1 195934790 195935108 -46729245 - MER46C DNA MER2_type 0 338 1 212 256 0 26 chr1 195935491 195935569 -46728784 + (CTTAT)n Simple_repeat Simple_repeat 1 76 0 2241 109 0 0 chr1 195936181 195936493 -46727860 - AluSp SINE Alu 0 312 1 1472 254 50 9 chr1 195937372 195937794 -46726559 + L2 LINE L2 2118 2556 -758 1227 173 27 0 chr1 195937794 195938014 -46726339 - AluJb SINE Alu -2 310 85 553 277 210 3 chr1 195938028 195938418 -46725935 + L2 LINE L2 2590 3053 -260 530 238 11 92 chr1 195938423 195938567 -46725786 + MLT1F LTR MaLR 1 155 -387 2645 119 38 17 chr1 195938567 195938606 -46725747 - MSTA LTR MaLR 0 428 391 2115 117 10 20 chr1 195938606 195938890 -46725463 + AluSx SINE Alu 1 283 -29 198 0 0 0 chr1 195938890 195938912 -46725441 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 2115 117 10 20 chr1 195938912 195938927 -46725426 + AluSx SINE Alu 283 297 -15 2645 119 38 17 chr1 195938927 195939306 -46725047 - MSTA LTR MaLR -37 391 1 530 238 11 92 chr1 195939306 195939346 -46725007 + MLT1F LTR MaLR 155 170 -372 585 171 154 0 chr1 195939346 195939463 -46724890 + FLAM_C SINE Alu 6 140 -3 479 197 86 70 chr1 195939510 195939726 -46724627 + MLT1F1 LTR MaLR 190 487 -80 2118 133 7 7 chr1 195939726 195940027 -46724326 + AluSx SINE Alu 1 301 -11 479 197 86 70 chr1 195940027 195940046 -46724307 + MLT1F1 LTR MaLR 487 504 -63 2112 158 38 3 chr1 195940148 195940514 -46723839 - L1MC/D LINE L1 -534 5799 5421 1947 157 90 25 chr1 195941380 195941781 -46722572 - MSTA LTR MaLR -1 427 1 2197 150 0 45 chr1 195942003 195942051 -46722302 + MLT1A1 LTR MaLR 1 50 -315 856 193 87 0 chr1 195942051 195942212 -46722141 - FAM SINE Alu 0 175 1 2197 150 0 45 chr1 195942212 195942542 -46721811 + MLT1A1 LTR MaLR 50 362 -3 2474 74 3 0 chr1 195942704 195943003 -46721350 - AluSp SINE Alu -13 300 1 1424 202 100 15 chr1 195944154 195944495 -46719858 - MLT1A2 LTR MaLR -4 370 1 367 186 0 58 chr1 195944495 195944581 -46719772 - MLT1A2-int LTR MaLR 0 1735 1655 38 0 0 0 chr1 195944581 195944619 -46719734 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr1 195944639 195944672 -46719681 + AT_rich Low_complexity Low_complexity 1 33 0 1841 130 4 4 chr1 195944672 195944934 -46719419 + AluSc SINE Alu 1 262 -47 1773 129 19 0 chr1 195945070 195945333 -46719020 - AluSx SINE Alu -44 268 1 291 100 0 0 chr1 195945416 195945456 -46718897 - MLT1G LTR MaLR -13 577 538 1295 163 0 0 chr1 195945470 195945745 -46718608 + AluSg/x SINE Alu 95 369 0 2431 90 0 10 chr1 195945822 195946133 -46718220 - AluSx SINE Alu -4 308 1 35 0 0 0 chr1 195946141 195946176 -46718177 + AT_rich Low_complexity Low_complexity 1 35 0 2068 161 30 10 chr1 195946206 195946634 -46717719 - MLT1A2-int LTR MaLR -66 1666 889 266 258 0 0 chr1 195946725 195946787 -46717566 - MLT1A2-int LTR MaLR -994 741 680 1705 198 60 53 chr1 195946866 195947251 -46717102 - MLT1A2-int LTR MaLR -629 742 213 1966 155 0 13 chr1 195947251 195947554 -46716799 - AluSx SINE Alu -13 299 1 1705 198 60 53 chr1 195947554 195947765 -46716588 - MLT1A2-int LTR MaLR -1158 213 5 1877 218 32 45 chr1 195947770 195947808 -46716545 - MLT2B1 LTR ERVL 0 520 483 318 26 0 0 chr1 195947808 195947847 -46716506 + (TG)n Simple_repeat Simple_repeat 1 39 0 1877 218 32 45 chr1 195947847 195948335 -46716018 - MLT2B1 LTR ERVL -37 483 1 507 176 275 0 chr1 195948668 195948799 -46715554 - MER5A DNA MER1_type -14 175 9 181 209 0 23 chr1 195948808 195948851 -46715502 + L3 LINE CR1 1527 1568 -9 1647 109 0 0 chr1 195948976 195949186 -46715167 + AluSq SINE Alu 85 294 -19 1575 114 0 0 chr1 195949294 195949505 -46714848 - AluSc SINE Alu -98 211 1 1126 67 0 7 chr1 195949505 195949640 -46714713 - AluSc SINE Alu -175 134 1 366 42 0 0 chr1 195950512 195950560 -46713793 + (CA)n Simple_repeat Simple_repeat 2 49 0 2271 103 0 10 chr1 195951694 195951994 -46712359 + AluSx SINE Alu 6 302 -10 214 337 50 10 chr1 195952674 195952775 -46711578 + L2 LINE L2 3164 3268 -4 1412 161 3 77 chr1 195953430 195953638 -46710715 + AluJo SINE Alu 32 215 -97 1062 426 81 0 chr1 195953638 195953910 -46710443 - AluSg SINE Alu -6 294 1 1412 161 3 77 chr1 195953910 195953986 -46710367 + AluJo SINE Alu 215 295 -17 470 113 12 38 chr1 195954282 195954362 -46709991 + FLAM_A SINE Alu 55 132 -10 2313 109 0 0 chr1 195954364 195954667 -46709686 + AluSg SINE Alu 1 303 -7 464 292 27 62 chr1 195954679 195954939 -46709414 + MLT1J LTR MaLR 258 508 -3 2279 94 16 3 chr1 195955294 195955602 -46708751 + AluSx SINE Alu 1 312 0 367 275 24 58 chr1 195955881 195955972 -46708381 + L1MEc LINE L1 1412 1505 -1071 909 351 32 83 chr1 195955972 195956285 -46708068 + AluJb SINE Alu 1 297 -5 367 275 24 58 chr1 195956285 195956401 -46707952 + L1MEc LINE L1 1505 1673 -903 1991 150 3 7 chr1 195956523 195956817 -46707536 - AluJo SINE Alu -19 293 1 438 292 93 38 chr1 195956846 195957082 -46707271 - MLT1I LTR MaLR -16 393 145 225 231 55 22 chr1 195957325 195957416 -46706937 - L1ME LINE L1 -197 5924 5831 1674 169 58 45 chr1 195957770 195958148 -46706205 + LTR37A LTR ERV1 18 400 -26 1590 203 33 11 chr1 195958369 195958733 -46705620 - MLT1A2 LTR MaLR 0 374 3 1011 231 62 12 chr1 195959117 195959455 -46704898 + L2 LINE L2 1109 1463 -1851 361 263 30 0 chr1 195959456 195959555 -46704798 + L2 LINE L2 2015 2116 -1198 1189 188 8 12 chr1 195959560 195959816 -46704537 + MER33 DNA MER1_type 5 259 -65 930 174 39 7 chr1 195959835 195959990 -46704363 - FRAM SINE Alu -23 153 1 1662 193 7 0 chr1 195960017 195960307 -46704046 + AluJo SINE Alu 1 292 -20 262 234 47 0 chr1 195960316 195960380 -46703973 + MER33 DNA MER1_type 297 363 0 2486 232 145 21 chr1 195960381 195961450 -46702903 + L2 LINE L2 2111 3291 -22 1672 206 71 16 chr1 195961451 195961819 -46702534 + MSTD LTR MaLR 1 388 -8 2405 100 0 6 chr1 195962454 195962765 -46701588 - AluSg SINE Alu 0 310 2 578 247 108 40 chr1 195962765 195963016 -46701337 - L2 LINE L2 -12 3301 3034 1962 204 54 53 chr1 195963028 195963685 -46700668 - MER21B LTR ERV1 -3 860 100 382 241 12 49 chr1 195963653 195963788 -46700565 - MER21B LTR ERV1 -400 205 35 * 364 340 57 0 chr1 195963859 195964018 -46700335 - L2 LINE L2 -342 2972 2805 181 286 0 101 chr1 195964095 195964214 -46700139 - L2 LINE L2 -682 2632 2526 1516 197 27 120 chr1 195964284 195964641 -46699712 + MER34B LTR ERV1 1 390 -175 1996 116 49 7 chr1 195964641 195964961 -46699392 - AluSg SINE Alu 0 310 1 1505 186 97 0 chr1 195964969 195965238 -46699115 - AluJo SINE Alu -17 295 1 1516 197 27 120 chr1 195965238 195965494 -46698859 + MER34B LTR ERV1 397 565 0 440 249 122 17 chr1 195965567 195965748 -46698605 - MER31-int LTR ERV1 -3030 1906 1707 540 195 37 61 chr1 195965892 195966056 -46698297 - MER31-int LTR ERV1 -3490 1446 1287 1905 166 0 13 chr1 195966091 195966393 -46697960 + AluJb SINE Alu 1 298 -14 641 236 33 16 chr1 195966397 195966666 -46697687 - MER31-int LTR ERV1 -3636 1300 1061 217 206 22 87 chr1 195966671 195966763 -46697590 - MIR SINE MIR -172 90 5 2228 124 0 3 chr1 195966775 195967081 -46697272 + AluSx SINE Alu 1 305 -7 1938 156 0 0 chr1 195967254 195967537 -46696816 + AluSx SINE Alu 1 283 -29 2471 74 0 0 chr1 195968058 195968355 -46695998 + AluY SINE Alu 1 297 -14 695 339 29 29 chr1 195969093 195969477 -46694876 + MER89-int LTR ERV1 3126 3509 -3292 553 231 21 7 chr1 195969509 195969652 -46694701 - L1M4 LINE L1 -3317 2829 2685 2053 111 61 0 chr1 195969657 195969937 -46694416 + AluSg SINE Alu 1 297 -13 646 225 14 0 chr1 195969971 195970109 -46694244 + FLAM_C SINE Alu 2 141 -2 261 233 17 17 chr1 195970138 195970198 -46694155 - MER21A LTR ERV1 -190 741 682 * 1027 257 143 67 chr1 195970196 195970705 -46693648 - MER77 LTR ERV1 -6 599 52 1210 247 44 0 chr1 195970732 195971076 -46693277 - L1M4 LINE L1 -3473 2673 2315 429 195 95 12 chr1 195971085 195971205 -46693148 - L1MB7 LINE L1 -8 6166 6053 748 162 0 0 chr1 195971232 195971343 -46693010 - FLAM_C SINE Alu -24 119 9 2479 166 58 40 chr1 195971350 195971869 -46692484 - L1MB7 LINE L1 -123 6061 5534 2488 131 35 44 chr1 195971974 195972461 -46691892 + L1MA8 LINE L1 5477 5967 -324 2267 105 3 0 chr1 195972461 195972757 -46691596 + AluSx SINE Alu 1 297 -15 2488 131 35 44 chr1 195972757 195972956 -46691397 + L1MA8 LINE L1 5967 6088 -203 2194 95 3 3 chr1 195972956 195973239 -46691114 + AluSq SINE Alu 7 289 -24 2488 131 35 44 chr1 195973239 195973439 -46690914 + L1MA8 LINE L1 6088 6288 -3 400 246 240 18 chr1 195973461 195973632 -46690721 - L2 LINE L2 -685 2629 2421 462 288 50 85 chr1 195973773 195974054 -46690299 - LTR67 LTR ERVL -264 293 23 2186 123 3 3 chr1 195974525 195974826 -46689527 + AluJb SINE Alu 1 301 -11 2032 134 27 0 chr1 195975067 195975246 -46689107 - AluSc SINE Alu -3 306 133 261 0 0 0 chr1 195975246 195975275 -46689078 + (TG)n Simple_repeat Simple_repeat 2 30 0 192 40 0 0 chr1 195975274 195975299 -46689054 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 * 2032 134 27 0 chr1 195975275 195975417 -46688936 - AluSc SINE Alu -176 133 1 25 65 0 0 chr1 195976111 195976157 -46688196 + AT_rich Low_complexity Low_complexity 1 46 0 675 192 0 8 chr1 195976274 195976394 -46687959 - FLAM_C SINE Alu -24 119 1 233 143 0 0 chr1 195977819 195977861 -46686492 - FLAM_C SINE Alu 0 133 92 748 178 6 6 chr1 195977861 195978040 -46686313 - L1MB7 LINE L1 -753 5393 5236 2223 108 0 7 chr1 195978146 195978441 -46685912 - AluSc SINE Alu -16 293 1 701 176 0 0 chr1 195978600 195978708 -46685645 - FLAM_C SINE Alu -33 110 3 2462 80 3 0 chr1 195979178 195979480 -46684873 + AluSp SINE Alu 1 303 -10 1269 106 0 0 chr1 195979492 195979653 -46684700 + AluSq SINE Alu 1 161 -152 839 165 0 0 chr1 195979673 195979806 -46684547 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr1 195979806 195979828 -46684525 + AT_rich Low_complexity Low_complexity 1 22 0 1370 131 67 12 chr1 195979828 195980188 -46684165 - LTR23 LTR ERV1 -10 427 1 * 2127 152 68 38 chr1 195980188 195980222 -46684131 + MER21B LTR ERV1 459 490 -373 2345 104 0 0 chr1 195980222 195980521 -46683832 + AluSx SINE Alu 1 299 -13 2127 152 68 38 chr1 195980521 195980879 -46683474 + MER21B LTR ERV1 490 863 0 248 261 359 0 chr1 195980898 195980990 -46683363 - MLT1G1 LTR MaLR -402 193 69 1113 150 105 19 chr1 195980998 195981266 -46683087 - LTR29 LTR ERV1 -11 642 317 1202 85 50 45 chr1 195981276 195981422 -46682931 - LTR29 LTR ERV1 -422 200 51 2829 85 3 11 chr1 195981422 195981800 -46682553 + THE1C LTR MaLR 1 375 0 1202 85 50 45 chr1 195981800 195981852 -46682501 - LTR29 LTR ERV1 -571 51 1 1704 224 13 89 chr1 195982215 195982664 -46681689 - MLT1E LTR MaLR 0 593 203 906 152 78 52 chr1 195982664 195982855 -46681498 + MSTB LTR MaLR 1 196 -230 709 178 0 0 chr1 195982862 195982969 -46681384 + FLAM_C SINE Alu 7 113 -30 318 332 14 5 chr1 195983162 195983308 -46681045 - HAL1b LINE L1 -699 1712 534 3584 170 16 8 chr1 195983308 195983949 -46680404 - Charlie1a DNA MER1_type -264 1191 546 2231 200 52 29 chr1 195983926 195984112 -46680241 - Charlie1a DNA MER1_type -2260 501 321 * 2590 46 3 3 chr1 195984112 195984414 -46679939 + AluY SINE Alu 1 302 -9 2231 200 52 29 chr1 195984414 195984708 -46679645 - Charlie1a DNA MER1_type -2440 321 10 2315 119 0 0 chr1 195985014 195985317 -46679036 - AluSx SINE Alu -9 303 1 2089 129 3 0 chr1 195986127 195986422 -46677931 + AluSx SINE Alu 1 296 -16 363 83 0 42 chr1 195986422 195986494 -46677859 + (TA)n Simple_repeat Simple_repeat 2 70 0 922 146 35 29 chr1 195986804 195986975 -46677378 - MER105 DNA DNA -5 199 28 2352 85 0 7 chr1 195987343 195987650 -46676703 + AluY SINE Alu 1 305 -6 385 125 0 16 chr1 195987969 195988033 -46676320 - MLT1F1 LTR MaLR 0 567 505 1995 89 0 16 chr1 195988038 195988295 -46676058 + AluSq SINE Alu 1 253 -60 466 185 159 1 chr1 196188321 196188378 -46475975 + L1ME LINE L1 5304 5351 -818 2224 74 19 13 chr1 196188378 196188687 -46475666 + L1PA3 LINE L1 5845 6155 0 466 185 159 1 chr1 196188687 196188788 -46475565 + L1ME LINE L1 5351 5486 -683 1787 158 0 0 chr1 196188788 196189073 -46475280 + AluJo SINE Alu 1 285 -27 1747 91 31 45 chr1 196189073 196189251 -46475102 + L1PA10 LINE L1 5881 6055 -113 2129 115 0 3 chr1 196189251 196189547 -46474806 + AluSg SINE Alu 1 295 -15 1747 91 31 45 chr1 196189547 196189654 -46474699 + L1PA10 LINE L1 6055 6162 -6 1885 74 81 3 chr1 196190043 196190327 -46474026 + AluY SINE Alu 1 306 -5 2154 105 0 10 chr1 196190366 196190671 -46473682 - AluSx SINE Alu -10 302 1 180 0 0 0 chr1 196191930 196191950 -46472403 + (T)n Simple_repeat Simple_repeat 1 20 0 989 173 130 4 chr1 196192698 196192929 -46471424 - MIR SINE MIR 0 262 3 1976 115 0 11 chr1 196194880 196195201 -46469152 + AluSx SINE Alu 1 318 0 520 286 81 26 chr1 196195201 196195474 -46468879 - L1ME4a LINE L1 -19 6102 5815 943 286 160 12 chr1 196195623 196196186 -46468167 + L2 LINE L2 2686 3313 0 429 227 118 18 chr1 196197072 196197182 -46467171 + MER91B DNA MER1_type 4 124 -66 264 174 17 47 chr1 196197757 196197929 -46466424 + (CA)n Simple_repeat Simple_repeat 1 167 0 2012 104 0 11 chr1 196198814 196199101 -46465252 + AluSp SINE Alu 1 284 -29 232 196 0 20 chr1 196200457 196200508 -46463845 + L2 LINE L2 3261 3310 -3 1691 161 26 20 chr1 196201609 196201914 -46462439 - AluJb SINE Alu -4 308 2 2339 83 7 0 chr1 196202748 196203048 -46461305 - AluSx SINE Alu -10 302 1 617 222 21 54 chr1 196203049 196203259 -46461094 + L1M4 LINE L1 4195 4404 -1742 688 185 30 0 chr1 196203262 196203397 -46460956 + MER6 DNA MER2_type 305 443 -422 2121 100 3 10 chr1 196203397 196203708 -46460645 - AluY SINE Alu -2 309 1 1889 155 3 0 chr1 196203759 196204056 -46460297 - AluSx SINE Alu -14 298 1 1880 149 7 0 chr1 196204107 196204403 -46459950 - AluSx SINE Alu -14 298 1 1667 150 42 17 chr1 196204421 196204708 -46459645 - AluJo SINE Alu -18 294 1 387 62 31 0 chr1 196204709 196204774 -46459579 + MER6 DNA MER2_type 633 699 -166 601 105 11 0 chr1 196204791 196204886 -46459467 - MLT2B3 LTR ERVL -456 98 3 2320 66 3 13 chr1 196204908 196205213 -46459140 - AluSp SINE Alu -11 302 1 2618 200 30 13 chr1 196205213 196205843 -46458510 + L1M4 LINE L1 4535 5175 -971 974 178 11 0 chr1 196205849 196206023 -46458330 + AluJo SINE Alu 119 294 -18 2284 93 3 0 chr1 196206042 196206344 -46458009 + AluSx SINE Alu 8 310 -2 439 218 9 0 chr1 196206350 196206460 -46457893 + L1M4 LINE L1 5187 5297 -849 336 24 0 0 chr1 196207431 196207472 -46456881 + (GA)n Simple_repeat Simple_repeat 2 42 0 234 341 118 14 chr1 196208753 196208973 -46455380 + L2 LINE L2 2148 2390 -924 1556 209 65 41 chr1 196209004 196209341 -46455012 - MLT1D LTR MaLR -2 503 153 2287 93 0 10 chr1 196209341 196209652 -46454701 + AluSx SINE Alu 1 308 -4 1556 209 65 41 chr1 196209652 196209726 -46454627 - MLT1D LTR MaLR -352 153 82 621 72 0 0 chr1 196209729 196209812 -46454541 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 631 267 75 0 chr1 196209816 196209962 -46454391 - FAM SINE Alu -18 157 1 284 148 0 37 chr1 196209962 196210016 -46454337 - AluSq/x SINE Alu -166 136 85 265 100 0 0 chr1 196210018 196210058 -46454295 + MLT1G LTR MaLR 538 577 -13 1255 136 0 0 chr1 196210141 196210318 -46454035 + AluSx SINE Alu 1 177 -135 852 134 8 22 chr1 196211650 196211784 -46452569 + FLAM_C SINE Alu 1 132 -1 473 259 42 28 chr1 196211879 196212022 -46452331 - MIR SINE MIR -16 246 102 297 258 81 24 chr1 196212105 196212229 -46452124 - MIR SINE MIR -3 259 129 433 89 0 0 chr1 196212229 196212285 -46452068 + AluJb SINE Alu 50 105 -207 350 298 141 31 chr1 196212986 196213177 -46451176 - MIR SINE MIR -37 225 14 183 261 0 0 chr1 196213417 196213463 -46450890 - MIR SINE MIR -115 147 102 219 319 123 63 chr1 196213798 196214149 -46450204 + L3 LINE CR1 1018 1389 -188 1913 150 3 13 chr1 196217710 196218024 -46446329 - AluJb SINE Alu -1 311 1 3332 160 48 23 chr1 196218116 196218768 -46445585 - L1MB2 LINE L1 -62 6109 5438 2519 33 0 10 chr1 196218768 196219122 -46445231 - AluY SINE Alu 0 311 1 3332 160 48 23 chr1 196219122 196219161 -46445192 - L1MB2 LINE L1 -733 5438 5401 299 240 27 0 chr1 196219380 196219455 -46444898 + MIR SINE MIR 71 147 -61 898 158 38 24 chr1 196220553 196220743 -46443610 + L1PA15 LINE L1 5983 6171 0 595 243 81 7 chr1 196221426 196221574 -46442779 - MIR SINE MIR -81 181 23 571 242 45 76 chr1 196221653 196221851 -46442502 + MER91A DNA MER1_type 2 193 -3 1264 133 51 0 chr1 196222058 196222254 -46442099 - Tigger3(Golem) DNA MER2_type -2 3027 2822 225 104 0 52 chr1 196222741 196222769 -46441584 + (TA)n Simple_repeat Simple_repeat 2 30 -41 1684 176 7 7 chr1 196222769 196223058 -46441295 + AluJo SINE Alu 1 289 -23 225 104 0 52 chr1 196223058 196223084 -46441269 + (TA)n Simple_repeat Simple_repeat 30 54 -17 2082 116 0 10 chr1 196223084 196223387 -46440966 + AluSq SINE Alu 2 301 -12 225 104 0 52 chr1 196223387 196223405 -46440948 + (TA)n Simple_repeat Simple_repeat 54 71 0 247 284 59 20 chr1 196224279 196224381 -46439972 + MIR3 SINE MIR 56 161 -47 216 195 24 0 chr1 196224460 196224501 -46439852 - MER5B DNA MER1_type -132 46 5 423 317 8 8 chr1 196224781 196224904 -46439449 - MIR3 SINE MIR -71 137 15 271 202 112 45 chr1 196227378 196227467 -46436886 - MIR3 SINE MIR -29 179 85 657 164 73 9 chr1 196228516 196228626 -46435727 + FLAM_C SINE Alu 2 118 -25 2161 88 3 29 chr1 196228640 196228946 -46435407 + AluSg SINE Alu 1 298 -12 199 348 70 9 chr1 196228952 196229067 -46435286 - MIR SINE MIR -121 141 20 200 322 39 69 chr1 196229090 196229323 -46435030 - L2 LINE L2 -95 3177 2952 443 218 23 0 chr1 196229736 196229823 -46434530 - MLT1A1 LTR MaLR 0 365 277 959 184 0 46 chr1 196229827 196229882 -46434471 + MLT1A1-int LTR MaLR 1549 1605 -130 1648 151 9 44 chr1 196229882 196230199 -46434154 - AluJo SINE Alu -6 306 1 959 184 0 46 chr1 196230199 196230339 -46434014 + MLT1A1-int LTR MaLR 1605 1735 0 1784 197 49 11 chr1 196230339 196230689 -46433664 + MLT1A1 LTR MaLR 1 363 -2 1744 98 8 0 chr1 196230820 196231054 -46433299 - AluSx SINE Alu -75 237 2 183 274 145 0 chr1 196232210 196232272 -46432081 + MIR3 SINE MIR 132 202 -6 2285 138 44 60 chr1 196232668 196233022 -46431331 + MSTA LTR MaLR 1 349 -79 2207 75 0 0 chr1 196233022 196233325 -46431028 + AluSc SINE Alu 1 303 0 2285 138 44 60 chr1 196233325 196233404 -46430949 + MSTA LTR MaLR 349 428 0 51 26 0 13 chr1 196233602 196233657 -46430696 + AT_rich Low_complexity Low_complexity 1 56 -19 2134 114 0 0 chr1 196233657 196233956 -46430397 + AluSg SINE Alu 1 299 -11 51 26 0 13 chr1 196233956 196233976 -46430377 + AT_rich Low_complexity Low_complexity 56 75 0 188 67 33 0 chr1 196234331 196234361 -46429992 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 632 299 29 20 chr1 196235504 196235666 -46428687 - MIR SINE MIR 0 262 96 2479 107 39 14 chr1 196235666 196236021 -46428332 - THE1B LTR MaLR 0 364 1 632 299 29 20 chr1 196236021 196236102 -46428251 - MIR SINE MIR -166 96 17 943 183 7 34 chr1 196236157 196236345 -46428008 - MLT1A2 LTR MaLR -21 484 173 1147 161 10 0 chr1 196236365 196236558 -46427795 - AluSg/x SINE Alu -4 306 112 429 20 0 0 chr1 196236839 196236889 -46427464 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 2426 81 0 0 chr1 196237077 196237385 -46426968 - AluSg SINE Alu -2 308 1 1747 164 3 13 chr1 196237389 196237688 -46426665 - AluJb SINE Alu -16 296 1 275 341 16 16 chr1 196238054 196238183 -46426170 + MIR3 SINE MIR 15 143 -65 233 263 18 0 chr1 196238621 196238678 -46425675 - MIR3 SINE MIR -18 190 133 264 256 156 11 chr1 196239395 196239485 -46424868 - MIR3 SINE MIR -15 193 91 215 258 65 0 chr1 196240563 196240625 -46423728 - MER5A DNA MER1_type 0 189 124 541 139 0 0 chr1 196240625 196240704 -46423649 + AluS SINE Alu 2 80 -232 266 282 6 45 chr1 196241067 196241229 -46423124 + G-rich Low_complexity Low_complexity 1 176 -69 183 80 0 0 chr1 196241229 196241254 -46423099 + (TGGGGG)n Simple_repeat Simple_repeat 2 26 0 266 282 6 45 chr1 196241254 196241322 -46423031 + G-rich Low_complexity Low_complexity 176 245 0 552 201 56 151 chr1 196241367 196241705 -46422648 - MER110A LTR ERV1 -92 376 71 854 282 146 24 chr1 196241733 196242003 -46422350 - L2 LINE L2 -687 2627 2391 3449 130 27 32 chr1 196242003 196242085 -46422268 + LTR26E LTR ERV1 2 83 -539 2048 131 7 26 chr1 196242085 196242391 -46421962 + AluJb SINE Alu 7 306 -6 3449 130 27 32 chr1 196242391 196242932 -46421421 + LTR26E LTR ERV1 83 622 0 854 282 146 24 chr1 196242932 196243250 -46421103 - L2 LINE L2 -923 2391 1967 24 32 0 0 chr1 196243404 196243435 -46420918 + AT_rich Low_complexity Low_complexity 1 31 0 2402 70 10 3 chr1 196243742 196244041 -46420312 - AluSp SINE Alu -11 302 2 631 282 105 25 chr1 196244322 196244599 -46419754 - L2 LINE L2 -10 3262 2964 273 316 75 75 chr1 196244699 196244959 -46419394 + L2 LINE L2 2974 3236 -36 2424 96 3 0 chr1 196244959 196245260 -46419093 - AluSx SINE Alu -10 302 1 273 316 75 75 chr1 196245260 196245293 -46419060 + L2 LINE L2 3235 3267 -5 2271 55 14 14 chr1 196245434 196245727 -46418626 - AluY SINE Alu -17 294 2 232 309 0 12 chr1 196246049 196246133 -46418220 + CT-rich Low_complexity Low_complexity 1 83 0 308 224 13 13 chr1 196248764 196248840 -46415513 - L2 LINE L2 -12 3260 3185 303 242 146 101 chr1 196248876 196249054 -46415299 + MIR SINE MIR 76 261 -1 2228 73 36 20 chr1 196249329 196249630 -46414723 + AluY SINE Alu 3 308 -3 2211 106 3 3 chr1 196249942 196250235 -46414118 - AluSc SINE Alu -16 293 1 252 296 122 35 chr1 196250256 196250428 -46413925 + MIR SINE MIR 2 188 -74 2457 69 7 3 chr1 196250551 196250855 -46413498 - AluY SINE Alu -6 305 1 207 368 10 11 chr1 196251164 196251281 -46413072 + MIR SINE MIR 33 149 -59 225 0 0 0 chr1 196251877 196251902 -46412451 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 2170 194 65 99 chr1 196251934 196252088 -46412265 + L1ME1 LINE L1 5467 5625 -541 2098 132 0 35 chr1 196252088 196252407 -46411946 - AluJb SINE Alu -4 308 1 2170 194 65 99 chr1 196252407 196252506 -46411847 + L1ME1 LINE L1 5625 5726 -440 2239 108 0 7 chr1 196252506 196252802 -46411551 - AluSx SINE Alu -18 294 1 2170 194 65 99 chr1 196252802 196253237 -46411116 + L1ME1 LINE L1 5726 6133 -33 1593 188 45 0 chr1 196253238 196253357 -46410996 + AluJo SINE Alu 1 113 -199 207 0 0 0 chr1 196253357 196253380 -46410973 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1593 188 45 0 chr1 196253380 196253547 -46410806 + AluJo SINE Alu 113 300 -12 2578 77 0 3 chr1 196253695 196254006 -46410347 - AluY SINE Alu 0 311 2 2192 123 0 7 chr1 196254007 196254308 -46410045 - AluSx SINE Alu -13 299 1 300 304 18 82 chr1 196255899 196256070 -46408283 + MIR SINE MIR 58 217 -45 434 264 182 20 chr1 196256285 196256424 -46407929 - MER63A DNA MER1_type -1478 210 44 989 74 28 11 chr1 196256424 196256600 -46407753 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 296 351 86 0 chr1 196257274 196257425 -46406928 + MIR3 SINE MIR 30 193 -15 642 119 0 37 chr1 196257508 196257617 -46406736 + MLT1A2 LTR MaLR 1 105 -269 2257 103 3 3 chr1 196258164 196258456 -46405897 - AluSg SINE Alu -18 292 1 21 71 0 0 chr1 196258600 196258642 -46405711 + AT_rich Low_complexity Low_complexity 1 42 0 347 190 16 124 chr1 196258799 196258920 -46405433 + MLT1F1 LTR MaLR 1 101 -441 2221 92 34 0 chr1 196258955 196259248 -46405105 - AluSq SINE Alu -10 303 1 1764 165 185 13 chr1 196259249 196259643 -46404710 + MLT1F1 LTR MaLR 98 559 -8 2183 93 7 4 chr1 196259693 196260000 -46404353 - AluSx SINE Alu 0 308 1 209 357 101 43 chr1 196260306 196260583 -46403770 + L2 LINE L2 3021 3313 0 200 184 0 0 chr1 196260591 196260629 -46403724 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 477 256 50 0 chr1 196260644 196260765 -46403588 + MIR3 SINE MIR 81 207 -1 1348 245 30 15 chr1 196260805 196261339 -46403014 + L1M4 LINE L1 3106 3671 -2475 2199 104 0 49 chr1 196261352 196261499 -46402854 + AluSx SINE Alu 1 127 -185 2064 84 31 0 chr1 196261499 196261760 -46402593 + AluSp SINE Alu 37 305 -8 2199 104 0 49 chr1 196261760 196261920 -46402433 + AluSx SINE Alu 127 293 -19 641 80 27 36 chr1 196262026 196262138 -46402215 - FLAM_C SINE Alu -11 132 22 285 282 28 137 chr1 196262257 196262439 -46401914 + MIR SINE MIR 29 177 -85 1668 197 3 3 chr1 196262439 196262738 -46401615 + AluSx SINE Alu 13 311 -1 285 282 28 137 chr1 196262738 196262810 -46401543 + MIR SINE MIR 177 255 -7 189 0 0 0 chr1 196262879 196262900 -46401453 + (T)n Simple_repeat Simple_repeat 1 21 0 215 288 58 93 chr1 196262915 196263054 -46401299 + MER5A DNA MER1_type 31 164 -25 336 231 25 66 chr1 196262919 196263040 -46401313 - MER5B DNA MER1_type -23 155 40 1803 152 20 20 chr1 196263081 196263378 -46400975 + AluJo SINE Alu 1 297 -15 495 355 5 0 chr1 196264243 196264429 -46399924 + MIR SINE MIR 20 206 -56 240 314 12 0 chr1 196264562 196264648 -46399705 + L2 LINE L2 2967 3053 -219 300 188 0 0 chr1 196265864 196265928 -46398425 + (TG)n Simple_repeat Simple_repeat 2 65 0 2387 98 0 0 chr1 196265939 196266234 -46398119 - AluSx SINE Alu -17 295 1 297 257 228 7 chr1 196266243 196266379 -46397974 + Charlie8 DNA MER1_type 70 235 -2182 606 239 0 8 chr1 196266549 196266679 -46397674 + FLAM_A SINE Alu 1 129 -13 765 250 17 6 chr1 196267032 196267212 -46397141 + MIR SINE MIR 59 240 -22 550 232 86 0 chr1 196267310 196267461 -46396892 + MER5A DNA MER1_type 26 189 0 922 163 98 0 chr1 196267749 196267933 -46396420 - MER2 DNA MER2_type 0 345 144 465 164 0 0 chr1 196267933 196268006 -46396347 + AluJo SINE Alu 6 78 -234 274 48 0 48 chr1 196268007 196268049 -46396304 - AluJo/FLAM SINE Alu -172 130 91 1147 150 35 30 chr1 196268051 196268251 -46396102 + AluJo SINE Alu 87 287 -25 2420 83 3 0 chr1 196268262 196268594 -46395759 + AluSp SINE Alu 1 313 0 754 163 16 0 chr1 196268595 196268724 -46395629 - MER2 DNA MER2_type -213 132 2 1905 177 9 14 chr1 196268729 196269079 -46395274 - MER7A DNA MER2_type 0 346 1 1334 215 39 0 chr1 196270211 196270523 -46393830 + MER33 DNA MER1_type 1 324 0 432 273 58 19 chr1 196271302 196271456 -46392897 + MIR SINE MIR 32 191 -71 568 176 28 42 chr1 196271513 196271655 -46392698 + MIR SINE MIR 13 152 -110 2033 112 52 3 chr1 196271805 196272091 -46392262 + AluSq SINE Alu 2 301 -12 420 239 0 11 chr1 196272121 196272209 -46392144 + L2 LINE L2 3180 3266 -6 226 275 102 68 chr1 196272358 196272594 -46391759 - L3b LINE CR1 -202 1381 1138 213 271 0 34 chr1 196272808 196272867 -46391486 - MIR3 SINE MIR -49 159 103 2212 111 0 0 chr1 196272916 196273195 -46391158 + AluSx SINE Alu 14 292 -20 323 269 77 0 chr1 196276285 196276389 -46387964 + MIR SINE MIR 33 144 -64 211 244 77 13 chr1 196277232 196277310 -46387043 + MIR SINE MIR 64 146 -116 378 0 0 0 chr1 196279514 196279556 -46384797 + (CA)n Simple_repeat Simple_repeat 2 43 0 297 214 145 57 chr1 196281510 196281669 -46382684 - MIR3 SINE MIR 0 208 36 2115 131 0 7 chr1 196282362 196282652 -46381701 - AluSx SINE Alu -24 288 1 188 343 57 0 chr1 196282665 196282735 -46381618 + L2 LINE L2 3138 3211 -61 2577 61 0 0 chr1 196283489 196283786 -46380567 + AluY SINE Alu 1 297 -14 234 293 10 61 chr1 196283786 196283885 -46380468 - MIR3 SINE MIR -24 184 91 363 316 29 7 chr1 196283949 196284085 -46380268 - MIR SINE MIR -122 140 2 277 163 0 0 chr1 196285477 196285520 -46378833 - MER45 DNA AcHobo 0 1581 1539 1863 133 72 17 chr1 196285535 196285828 -46378525 + AluSx SINE Alu 3 311 -1 282 209 19 9 chr1 196285828 196285933 -46378420 + GA-rich Low_complexity Low_complexity 1 106 0 553 144 183 0 chr1 196286121 196286225 -46378128 - MER45 DNA AcHobo -55 123 1 297 75 0 0 chr1 196286265 196286305 -46378048 + (TG)n Simple_repeat Simple_repeat 1 40 0 279 54 0 0 chr1 196286305 196286342 -46378011 + (GA)n Simple_repeat Simple_repeat 2 38 0 1678 180 61 3 chr1 196286371 196286716 -46377637 + MLT1A1 LTR MaLR 1 365 0 617 126 50 67 chr1 196287268 196287387 -46376966 + MLT1B LTR MaLR 1 117 -273 1318 81 0 12 chr1 196287387 196287559 -46376794 + AluY SINE Alu 142 311 0 1250 188 16 62 chr1 196287565 196287874 -46376479 + MLT1B LTR MaLR 96 390 0 372 315 68 68 chr1 196288043 196288456 -46375897 - L1 LINE L1 -2648 3498 3086 2338 85 20 7 chr1 196288913 196289218 -46375135 + AluSc SINE Alu 1 309 0 326 364 8 8 chr1 196289321 196289450 -46374903 - L2 LINE L2 0 3313 3185 384 269 52 37 chr1 196289509 196289610 -46374743 + MLT1J LTR MaLR 1 70 -380 2210 84 39 0 chr1 196289610 196289896 -46374457 + AluSp SINE Alu 1 297 -16 384 269 52 37 chr1 196289896 196289998 -46374355 + MLT1J LTR MaLR 70 169 -281 598 286 6 12 chr1 196290032 196290193 -46374160 + MLT1J LTR MaLR 152 311 -200 2034 138 3 13 chr1 196290219 196290524 -46373829 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr1 196291120 196291149 -46373204 + GC_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr1 196291402 196291457 -46372896 + GC_rich Low_complexity Low_complexity 1 55 0 37 0 0 0 chr1 196291490 196291527 -46372826 + GC_rich Low_complexity Low_complexity 1 37 0 465 163 250 35 chr1 196292618 196292713 -46371640 + MER3 DNA MER1_type 1 74 -135 2334 75 3 14 chr1 196292713 196293008 -46371345 - AluSp SINE Alu -19 294 3 465 163 250 35 chr1 196293008 196293084 -46371269 + MER3 DNA MER1_type 74 209 0 319 220 220 0 chr1 196293686 196293791 -46370562 + MIR3 SINE MIR 74 202 -6 209 278 111 0 chr1 196294844 196294952 -46369401 + MIR SINE MIR 78 197 -65 741 206 94 0 chr1 196294972 196295132 -46369221 - MER5B DNA MER1_type -1 177 3 229 49 0 73 chr1 196295369 196295410 -46368943 + (G)n Simple_repeat Simple_repeat 1 38 0 264 30 0 0 chr1 196295809 196295842 -46368511 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 230 338 25 10 chr1 196296919 196297051 -46367302 - MIR SINE MIR -86 122 29 959 170 6 0 chr1 196297894 196298059 -46366294 - FRAM SINE Alu 0 166 1 415 203 15 98 chr1 196298243 196298376 -46365977 + L2 LINE L2 3159 3280 -33 655 205 10 90 chr1 196298545 196298745 -46365608 + MER3 DNA MER1_type 3 186 -23 303 326 111 0 chr1 196301935 196302070 -46362283 - L2 LINE L2 0 3272 3123 187 191 0 43 chr1 196302443 196302490 -46361863 - MIR SINE MIR -65 143 99 192 350 0 0 chr1 196302903 196302963 -46361390 - MIR SINE MIR -92 170 111 399 209 16 93 chr1 196303282 196303411 -46360942 + MIR SINE MIR 70 188 -74 267 220 198 22 chr1 196303793 196303884 -46360469 + MIR SINE MIR 100 206 -56 1898 166 13 0 chr1 196304051 196304352 -46360001 - AluJb SINE Alu -7 305 1 2421 88 3 0 chr1 196304448 196304756 -46359597 - AluSp SINE Alu -4 309 1 590 290 65 29 chr1 196304796 196305041 -46359312 - MIR SINE MIR -7 255 2 2237 97 21 3 chr1 196305084 196305373 -46358980 - AluSx SINE Alu -18 294 1 207 246 0 46 chr1 196305489 196305554 -46358799 + MIR SINE MIR 58 119 -89 2183 114 14 3 chr1 196306348 196306638 -46357715 + AluSq SINE Alu 1 293 -20 3416 134 13 4 chr1 196306641 196307170 -46357183 + MER87 LTR ERV1 7 540 -1 1198 159 20 73 chr1 196307170 196307345 -46357008 + MER49-int LTR ERV1 3733 3916 -2415 1773 144 42 25 chr1 196307345 196307629 -46356724 + AluJo SINE Alu 10 298 -14 1198 159 20 73 chr1 196307629 196307883 -46356470 + MER49-int LTR ERV1 3916 4162 -2169 496 107 84 75 chr1 196307885 196307937 -46356416 + MER49-int LTR ERV1 4607 4657 -1407 2455 88 0 0 chr1 196307937 196308232 -46356121 - AluY SINE Alu -16 295 1 496 107 84 75 chr1 196308232 196308324 -46356029 + MER49-int LTR ERV1 4657 4888 -1176 395 215 104 86 chr1 196308315 196308478 -46355875 + MER49-int LTR ERV1 5985 6150 -608 * 1537 189 8 6 chr1 196308458 196308767 -46355586 + MER49-int LTR ERV1 6443 7096 -3 4842 134 3 11 chr1 196308768 196309522 -46354831 + MER49 LTR ERV1 1 748 -175 408 178 22 22 chr1 196309534 196309624 -46354729 + LOR1-int LTR ERV1 1997 2086 -5036 786 283 50 70 chr1 196309712 196310301 -46354052 + LOR1-int LTR ERV1 4965 7670 -450 2851 23 0 0 chr1 196310684 196310991 -46353362 - AluYb8 SINE Alu -11 307 1 1903 146 34 6 chr1 196311524 196311845 -46352508 + MER87 LTR ERV1 1 330 -211 810 232 53 5 chr1 196311947 196312137 -46352216 + MER87 LTR ERV1 343 541 0 225 328 26 52 chr1 196312435 196312551 -46351802 + L2 LINE L2 2983 3095 -177 591 299 10 20 chr1 196312685 196312882 -46351471 + MIR3 SINE MIR 14 208 0 496 377 95 19 chr1 196313179 196313590 -46350763 - L2 LINE L2 -1 3271 2830 788 269 58 18 chr1 196313601 196313824 -46350529 - MIR SINE MIR -3 259 28 185 375 0 0 chr1 196313846 196313918 -46350435 - L2 LINE L2 -498 2816 2745 2440 89 0 0 chr1 196313982 196314286 -46350067 + AluSq SINE Alu 1 304 -9 482 308 194 27 chr1 196314287 196315067 -46349286 - L2 LINE L2 -586 2728 1819 1423 179 72 11 chr1 196315067 196315346 -46349007 + MLT1A1 LTR MaLR 1 296 -69 791 218 10 24 chr1 196315447 196315653 -46348700 + MLT1A1 LTR MaLR 163 365 0 198 368 16 8 chr1 196315653 196315778 -46348575 - L2 LINE L2 -1491 1823 1698 928 105 13 13 chr1 196315806 196315958 -46348395 + LTR15 LTR ERV1 336 487 -6 1125 297 133 31 chr1 196315973 196316557 -46347796 - L2 LINE L2 -1611 1703 1180 1903 147 3 11 chr1 196316557 196316876 -46347477 + AluJo SINE Alu 1 317 0 1125 297 133 31 chr1 196316876 196317329 -46347024 - L2 LINE L2 -2134 1180 559 250 297 93 0 chr1 196317379 196317497 -46346856 - MIR SINE MIR -83 179 51 337 278 104 7 chr1 196317843 196317987 -46346366 - MIR SINE MIR 0 262 105 274 308 169 26 chr1 196318705 196319007 -46345346 + L3 LINE CR1 1144 1488 -89 1515 206 13 17 chr1 196319841 196320142 -46344211 + AluJo SINE Alu 1 300 -12 254 29 29 0 chr1 196320861 196320896 -46343457 + (TG)n Simple_repeat Simple_repeat 2 37 0 2776 151 8 6 chr1 196321001 196321485 -46342868 - MER31A LTR ERV1 0 485 1 246 219 0 31 chr1 196321518 196321582 -46342771 + CT-rich Low_complexity Low_complexity 2 63 0 212 119 0 24 chr1 196321588 196321630 -46342723 + (TTC)n Simple_repeat Simple_repeat 3 43 0 186 216 0 0 chr1 196322417 196322454 -46341899 + L2 LINE L2 3219 3255 -17 2334 118 0 6 chr1 196324007 196324321 -46340032 - AluSx SINE Alu 0 312 1 196 303 45 0 chr1 196325059 196325125 -46339228 - L2 LINE L2 0 3272 3204 227 275 87 0 chr1 196325247 196325316 -46339037 + MIR SINE MIR 34 108 -154 711 138 15 23 chr1 196325316 196325331 -46339022 - FLAM_C SINE Alu -169 133 119 312 70 0 0 chr1 196325331 196325374 -46338979 + (TG)n Simple_repeat Simple_repeat 2 44 0 711 138 15 23 chr1 196325374 196325488 -46338865 - FLAM_C SINE Alu -183 119 5 1116 170 158 19 chr1 196325509 196325921 -46338432 - AluJo SINE Alu 0 449 1 1022 178 0 0 chr1 196325927 196326084 -46338269 - AluJb SINE Alu -12 300 144 316 355 32 19 chr1 196326096 196326251 -46338102 + MIR SINE MIR 106 262 0 327 296 78 14 chr1 196326465 196326607 -46337746 + MIR SINE MIR 76 226 -36 218 97 0 0 chr1 196327348 196327379 -46336974 + MIR SINE MIR 115 145 -63 277 333 30 0 chr1 196327585 196327684 -46336669 - MIR3 SINE MIR -38 170 69 331 333 25 25 chr1 196327782 196327902 -46336451 - MIR SINE MIR -65 143 40 2376 212 55 42 chr1 196329270 196329833 -46334520 - L1MB3 LINE L1 -7 6176 5599 1529 126 4 22 chr1 196329833 196330013 -46334340 - AluJb SINE Alu 0 312 135 2051 132 0 7 chr1 196330013 196330322 -46334031 - AluSg SINE Alu 0 310 1 1529 126 4 22 chr1 196330322 196330371 -46333982 - AluJb SINE Alu -177 135 87 2376 212 55 42 chr1 196330371 196330551 -46333802 - L1MB3 LINE L1 -584 5599 5423 337 266 57 73 chr1 196330870 196331017 -46333336 + L1ME4a LINE L1 5773 5921 -200 2588 73 3 6 chr1 196331017 196331331 -46333022 + AluSp SINE Alu 1 313 0 337 266 57 73 chr1 196331331 196331454 -46332899 + L1ME4a LINE L1 5921 6045 -76 1929 140 25 35 chr1 196331454 196331769 -46332584 - AluJb SINE Alu 0 312 1 337 266 57 73 chr1 196331769 196331803 -46332550 + L1ME4a LINE L1 6045 6078 -43 2253 82 24 7 chr1 196331803 196332094 -46332259 + AluSx SINE Alu 1 296 -16 222 37 0 0 chr1 196332096 196332123 -46332230 + (TTG)n Simple_repeat Simple_repeat 1 27 0 337 266 57 73 chr1 196332123 196332167 -46332186 + L1ME4a LINE L1 6079 6120 -1 394 314 144 11 chr1 196332743 196332931 -46331422 + MIR SINE MIR 2 214 -48 210 244 22 0 chr1 196332957 196333002 -46331351 + MIR SINE MIR 15 60 -202 1981 124 57 10 chr1 196333021 196333319 -46331034 - AluJb SINE Alu 0 312 1 699 206 0 7 chr1 196333324 196333465 -46330888 + MIR SINE MIR 119 258 -4 1499 184 32 7 chr1 196333469 196333752 -46330601 + AluJo SINE Alu 4 293 -19 350 275 19 69 chr1 196333875 196333988 -46330365 - L2 LINE L2 -1192 2122 2005 1850 171 165 40 chr1 196333988 196334113 -46330240 + MLT1F1 LTR MaLR 3 111 -456 2350 107 0 0 chr1 196334113 196334413 -46329940 + AluSx SINE Alu 1 300 -12 1850 171 165 40 chr1 196334413 196334718 -46329635 + MLT1F1 LTR MaLR 111 508 -59 2199 98 0 14 chr1 196334718 196335051 -46329302 - AluSx SINE Alu 0 329 1 1850 171 165 40 chr1 196335051 196335120 -46329233 + MLT1F1 LTR MaLR 508 567 0 350 275 19 69 chr1 196335120 196335166 -46329187 - L2 LINE L2 -1309 2005 1971 2376 85 0 7 chr1 196335439 196335746 -46328607 - AluY SINE Alu -6 305 1 186 43 0 0 chr1 196335746 196335769 -46328584 + (T)n Simple_repeat Simple_repeat 1 23 0 883 146 35 29 chr1 196336115 196336286 -46328067 + MER105 DNA DNA 28 199 -5 349 309 0 53 chr1 196336555 196336668 -46327685 - L1MCa LINE L1 -4310 2116 2011 2152 125 3 0 chr1 196336668 196336963 -46327390 - AluSx SINE Alu -16 296 1 349 309 0 53 chr1 196336963 196337001 -46327352 - L1MCa LINE L1 -4415 2011 1973 1895 159 21 0 chr1 196337012 196337302 -46327051 - AluJo SINE Alu -7 305 10 22 35 0 0 chr1 196337347 196337376 -46326977 + AT_rich Low_complexity Low_complexity 1 29 0 2176 135 3 0 chr1 196337384 196337695 -46326658 + AluSx SINE Alu 1 312 0 516 137 94 0 chr1 196337927 196338022 -46326331 + MLT1E1 LTR MaLR 14 123 -494 547 322 127 41 chr1 196338022 196338052 -46326301 + L2 LINE L2 2211 2237 -1035 811 172 120 62 chr1 196338052 196338172 -46326181 - MER58A DNA MER1_type -2196 224 112 1753 178 7 21 chr1 196338172 196338458 -46325895 + AluJo SINE Alu 1 282 -30 216 86 0 0 chr1 196338459 196338494 -46325859 + (CTAA)n Simple_repeat Simple_repeat 2 36 0 811 172 120 62 chr1 196338494 196338580 -46325773 - MER58A DNA MER1_type -2307 113 4 547 322 127 41 chr1 196338580 196338936 -46325417 + L2 LINE L2 2237 2561 -711 2427 183 20 28 chr1 196338936 196339128 -46325225 + MLT1D LTR MaLR 1 193 -312 2015 92 89 7 chr1 196339128 196339399 -46324954 + AluSq SINE Alu 1 293 -20 2427 183 20 28 chr1 196339399 196339715 -46324638 + MLT1D LTR MaLR 193 505 0 547 322 127 41 chr1 196339715 196340208 -46324145 + L2 LINE L2 2561 3253 -19 393 167 191 8 chr1 196341127 196341253 -46323100 - L1ME3A LINE L1 -273 5897 5749 1261 167 126 63 chr1 196341265 196341583 -46322770 - MER46C DNA MER2_type 0 338 1 311 265 95 74 chr1 196341889 196342078 -46322275 - L1MCa LINE L1 -4002 2424 2232 2256 109 0 0 chr1 196342655 196342967 -46321386 - AluSp SINE Alu 0 312 1 251 277 43 14 chr1 196343672 196343813 -46320540 + T-rich Low_complexity Low_complexity 1 145 0 2310 98 7 3 chr1 196344080 196344387 -46319966 - AluY SINE Alu -3 308 1 2075 134 0 0 chr1 196344584 196344888 -46319465 + AluSx SINE Alu 1 304 0 2002 125 0 79 chr1 196344897 196345226 -46319127 + AluJb SINE Alu 1 303 -9 328 264 0 66 chr1 196345226 196345332 -46319021 - L1ME3A LINE L1 -528 5593 5495 270 243 29 52 chr1 196345622 196345795 -46318558 + (TTTA)n Simple_repeat Simple_repeat 2 170 0 1508 127 13 34 chr1 196345959 196346137 -46318216 - AluSg/x SINE Alu 0 312 132 429 36 0 0 chr1 196346137 196346192 -46318161 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2643 7 0 0 chr1 196346192 196346474 -46317879 - AluYa5 SINE Alu -29 282 1 1508 127 13 34 chr1 196346474 196346530 -46317823 - AluSg/x SINE Alu -178 134 82 239 301 92 46 chr1 196346535 196346729 -46317624 - HAL1 LINE L1 -2 2505 2294 2196 97 30 7 chr1 196346729 196347028 -46317325 - AluSx SINE Alu -6 306 1 239 301 92 46 chr1 196347028 196347095 -46317258 - HAL1 LINE L1 -213 2294 2232 1721 169 0 51 chr1 196347810 196348123 -46316230 - AluJb SINE Alu -12 300 4 352 319 65 0 chr1 196348236 196348405 -46315948 - HAL1 LINE L1 -718 1789 1610 473 258 47 23 chr1 196348614 196348742 -46315611 + L2 LINE L2 3160 3290 -23 24 0 0 0 chr1 196348908 196348932 -46315421 + AT_rich Low_complexity Low_complexity 1 24 0 2000 131 10 7 chr1 196348932 196349222 -46315131 - AluJb SINE Alu -17 295 5 2440 110 0 0 chr1 196349257 196349567 -46314786 + AluSg SINE Alu 1 310 0 183 42 0 0 chr1 196349576 196349600 -46314753 + (CAAG)n Simple_repeat Simple_repeat 1 24 0 2390 115 0 3 chr1 196350965 196351279 -46313074 + AluSq SINE Alu 1 313 0 2153 131 3 16 chr1 196351298 196351611 -46312742 + AluSq SINE Alu 1 309 -4 258 257 51 10 chr1 196351616 196351738 -46312615 + MIR SINE MIR 15 143 -65 701 154 18 0 chr1 196401756 196401866 -46262487 - FAM SINE Alu -73 112 1 405 165 12 141 chr1 196401869 196401973 -46262380 + Charlie1 DNA MER1_type 2614 2689 -72 1696 188 7 14 chr1 196401973 196402129 -46262224 - AluJb SINE Alu -21 291 136 1476 130 9 22 chr1 196402129 196402359 -46261994 - AluSg/x SINE Alu -1 309 83 1696 188 7 14 chr1 196402359 196402495 -46261858 - AluJb SINE Alu -176 136 1 405 165 12 141 chr1 196402495 196402560 -46261793 + Charlie1 DNA MER1_type 2689 2761 0 292 214 0 0 chr1 196402563 196402619 -46261734 + L2 LINE L2 3257 3312 -1 718 150 58 17 chr1 196402841 196402961 -46261392 + AluJo/FLAM SINE Alu 1 125 -177 1059 463 10 7 chr1 196402964 196403264 -46261089 + AluJb SINE Alu 2 302 0 1449 116 134 84 chr1 196403351 196403635 -46260718 - AluJb SINE Alu -14 298 1 1286 147 9 41 chr1 196404733 196404951 -46259402 + AluJb SINE Alu 86 296 -16 1365 151 34 64 chr1 196405431 196405696 -46258657 - AluJo SINE Alu -20 292 36 1486 150 116 35 chr1 196405799 196405831 -46258522 - Charlie1b DNA MER1_type -2386 375 347 1537 140 0 0 chr1 196405831 196406045 -46258308 - AluJb SINE Alu -15 297 84 1486 150 116 35 chr1 196406045 196406358 -46257995 - Charlie1b DNA MER1_type -2414 347 2 394 245 90 26 chr1 196406478 196406633 -46257720 - L2 LINE L2 -193 3079 2915 2237 98 3 7 chr1 196407069 196407365 -46256988 + AluSc SINE Alu 2 296 -13 936 120 23 8 chr1 196407872 196408005 -46256348 + AluJb SINE Alu 1 135 -177 2479 61 0 3 chr1 196408005 196408299 -46256054 + AluSc SINE Alu 1 293 -16 456 174 35 0 chr1 196410870 196410956 -46253397 - L2 LINE L2 0 3313 3225 580 272 34 34 chr1 196411915 196412121 -46252232 - MIR SINE MIR -48 214 9 341 305 47 16 chr1 196412731 196412859 -46251494 - MIR SINE MIR -116 146 15 335 327 39 0 chr1 196412872 196412976 -46251377 + MIR3 SINE MIR 74 181 -27 386 191 43 0 chr1 196413313 196413428 -46250925 + GA-rich Low_complexity Low_complexity 3 122 0 270 179 0 36 chr1 196413408 196413492 -46250861 + G-rich Low_complexity Low_complexity 3 83 0 * 23 33 0 0 chr1 196413540 196413570 -46250783 + AT_rich Low_complexity Low_complexity 1 30 0 2414 263 258 14 chr1 196413864 196414618 -46249735 + L2 LINE L2 836 1405 -1909 1719 184 0 26 chr1 196414618 196414927 -46249426 + AluJo SINE Alu 7 307 -5 2414 263 258 14 chr1 196414927 196415129 -46249224 + L2 LINE L2 1405 1556 -1758 2322 135 62 38 chr1 196415129 196415582 -46248771 + MLT1C LTR MaLR 1 464 -3 2414 263 258 14 chr1 196415582 196416136 -46248217 + L2 LINE L2 1556 2716 -598 2191 126 0 3 chr1 196416153 196416455 -46247898 - AluSx SINE Alu -11 301 1 249 391 53 0 chr1 196416606 196416739 -46247614 + L2 LINE L2 3123 3262 -10 2363 84 7 3 chr1 196417386 196417685 -46246668 - AluY SINE Alu -11 300 1 596 237 79 7 chr1 196417986 196418125 -46246228 + MIR SINE MIR 24 172 -90 1785 114 0 0 chr1 196418225 196418453 -46245900 - AluSx SINE Alu -84 228 1 806 173 0 36 chr1 196418487 196418626 -46245727 + AluJo SINE Alu 3 136 -176 1647 141 0 11 chr1 196418626 196418888 -46245465 + AluJb SINE Alu 40 298 -14 2498 74 0 0 chr1 196419434 196419731 -46244622 + AluSc SINE Alu 1 297 -12 22 0 0 0 chr1 196420748 196420770 -46243583 + AT_rich Low_complexity Low_complexity 1 22 0 714 253 0 12 chr1 196421628 196421790 -46242563 - MER58B DNA MER1_type -1 340 181 181 288 70 112 chr1 196422056 196422271 -46242082 + L2 LINE L2 2553 2758 -556 201 259 86 78 chr1 196422346 196422462 -46241891 - MIR SINE MIR -46 162 46 * 1431 254 83 11 chr1 196422431 196423010 -46241343 + L2 LINE L2 2683 3308 -5 547 237 104 0 chr1 196423290 196423425 -46240928 - MIR SINE MIR -36 226 78 242 305 157 17 chr1 196424254 196424490 -46239863 + L1MC5 LINE L1 7502 7770 -191 2141 91 38 0 chr1 196424978 196425265 -46239088 - AluY SINE Alu -8 303 6 1976 92 96 0 chr1 196426215 196426487 -46237866 + AluSq SINE Alu 1 298 -15 1608 148 121 0 chr1 196426848 196427112 -46237241 + AluJo SINE Alu 1 296 -16 533 330 16 27 chr1 196427920 196428105 -46236248 - MIR SINE MIR -60 202 20 2254 83 14 7 chr1 196428164 196428453 -46235900 + AluSc SINE Alu 1 291 -18 212 128 0 21 chr1 196428541 196428588 -46235765 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 292 289 56 78 chr1 196428590 196428732 -46235621 - MIR3 SINE MIR -60 148 10 980 214 0 0 chr1 196428749 196428922 -46235431 - AluJb SINE Alu -5 307 135 245 330 73 0 chr1 196429168 196429277 -46235076 + L2 LINE L2 2608 2724 -590 1705 159 30 17 chr1 196429277 196429573 -46234780 - AluJb SINE Alu -8 304 5 2300 107 7 0 chr1 196429823 196430131 -46234222 + AluSx SINE Alu 2 311 -1 1979 149 3 0 chr1 196430158 196430446 -46233907 + AluSx SINE Alu 1 289 -23 682 223 38 16 chr1 196430860 196430914 -46233439 - MER3 DNA MER1_type -21 188 137 2415 105 0 0 chr1 196430914 196431218 -46233135 + AluSx SINE Alu 3 306 -6 682 223 38 16 chr1 196431218 196431347 -46233006 - MER3 DNA MER1_type -72 137 1 195 367 163 7 chr1 196431877 196432024 -46232329 - L2 LINE L2 -1 3271 3102 307 240 68 12 chr1 196432301 196432426 -46231927 - MIR SINE MIR -66 142 18 1135 221 38 90 chr1 196432775 196433054 -46231299 - L1ME1 LINE L1 -47 6119 5876 1732 157 20 27 chr1 196433054 196433217 -46231136 - AluJo SINE Alu -15 297 135 2062 125 39 16 chr1 196433217 196433522 -46230831 - AluSx SINE Alu 0 312 1 1732 157 20 27 chr1 196433522 196433657 -46230696 - AluJo SINE Alu -177 135 1 1135 221 38 90 chr1 196433657 196433875 -46230478 - L1ME1 LINE L1 -290 5876 5648 960 352 96 40 chr1 196434132 196435970 -46228383 + L2 LINE L2 938 2877 -437 403 276 126 61 chr1 196436060 196436321 -46228032 + L2 LINE L2 2993 3270 -2 504 294 20 13 chr1 196436379 196436532 -46227821 + MER5A DNA MER1_type 36 189 0 491 280 103 11 chr1 196436732 196436907 -46227446 + MIR3 SINE MIR 3 193 -15 27 29 0 0 chr1 196438339 196438373 -46225980 + GC_rich Low_complexity Low_complexity 1 34 0 1175 163 9 28 chr1 196438944 196439159 -46225194 + AluJo SINE Alu 85 295 -17 459 301 34 92 chr1 196439369 196439631 -46224722 + L2 LINE L2 2970 3216 -56 902 91 0 0 chr1 196439652 196439762 -46224591 - AluSg/x SINE Alu -13 296 187 306 232 181 45 chr1 196441434 196441589 -46222764 + MIR SINE MIR 87 262 0 210 309 74 12 chr1 196441583 196441664 -46222689 + MIR3 SINE MIR 78 163 -45 * 647 221 34 0 chr1 196441819 196441968 -46222385 + MIR SINE MIR 106 259 -3 1973 110 0 7 chr1 196442858 196443140 -46221213 - AluSq SINE Alu -17 296 17 2104 71 0 11 chr1 196445114 196445396 -46218957 - AluSg SINE Alu -5 305 27 391 306 76 14 chr1 196449720 196449864 -46214489 + MER5B DNA MER1_type 10 162 -16 418 214 107 79 chr1 196449877 196450092 -46214261 + L1MC4 LINE L1 7736 7956 -86 239 173 54 0 chr1 196450202 196450302 -46214051 + MER91C DNA MER1_type 36 103 -37 208 0 0 59 chr1 196450464 196450498 -46213855 + (TTTAA)n Simple_repeat Simple_repeat 3 34 0 1169 158 130 16 chr1 196450498 196450751 -46213602 - AluJb SINE Alu -30 282 1 205 253 13 53 chr1 196451371 196451446 -46212907 - MIR3 SINE MIR -6 202 131 1433 314 120 27 chr1 196451827 196452749 -46211604 - L2 LINE L2 -550 2764 1696 2419 59 3 0 chr1 196452749 196453052 -46211301 + AluSp SINE Alu 1 304 -9 1433 314 120 27 chr1 196453052 196453370 -46210983 - L2 LINE L2 -1618 1696 1409 766 231 0 18 chr1 196454484 196454653 -46209700 - FRAM SINE Alu 0 166 1 1268 240 171 18 chr1 196454784 196455222 -46209131 + MLT1D LTR MaLR 1 505 0 2122 106 20 0 chr1 196455252 196455545 -46208808 + AluSx SINE Alu 1 299 -13 1078 281 100 51 chr1 196455574 196456123 -46208230 + MLT1K LTR MaLR 13 588 0 254 347 83 28 chr1 196456234 196456378 -46207975 - MIR3 SINE MIR -17 191 40 2967 245 72 24 chr1 196456989 196457753 -46206600 - L2 LINE L2 -243 3070 2247 537 113 0 0 chr1 196457753 196457833 -46206520 - MADE1 DNA Mariner 0 80 1 2967 245 72 24 chr1 196457833 196458075 -46206278 - L2 LINE L2 -1066 2247 2018 579 316 183 40 chr1 196458763 196460005 -46204348 + L2 LINE L2 556 1974 -1340 2132 277 81 26 chr1 196460257 196460819 -46203534 + L2 LINE L2 1851 2380 -933 637 173 9 9 chr1 196460819 196460929 -46203424 - MER81 DNA DNA -4 110 1 2132 277 81 26 chr1 196460929 196461679 -46202674 + L2 LINE L2 2380 3313 0 1454 170 7 28 chr1 196461941 196462224 -46202129 + AluJo SINE Alu 14 290 -22 2208 96 6 19 chr1 196462449 196462762 -46201591 - AluSg SINE Alu -1 309 1 300 350 123 39 chr1 196463073 196463659 -46200694 + L2 LINE L2 2342 2976 -338 496 242 107 34 chr1 196463775 196463924 -46200429 + MIR SINE MIR 3 162 -100 469 267 95 33 chr1 196463939 196464149 -46200204 - MIR SINE MIR -27 235 13 810 201 0 19 chr1 196464496 196464655 -46199698 + FRAM SINE Alu 1 153 -23 756 241 78 4 chr1 196464680 196464912 -46199441 + L1MEc LINE L1 1565 1813 -4583 270 0 0 0 chr1 196465013 196465043 -46199310 + (CA)n Simple_repeat Simple_repeat 1 30 0 1244 185 121 24 chr1 196465050 196465423 -46198930 + L1MEc LINE L1 1988 2396 -4000 233 315 15 0 chr1 196465454 196465584 -46198769 + L1ME1 LINE L1 34 165 -6377 954 178 60 5 chr1 196465617 196465802 -46198551 - MER20 DNA MER1_type -3 216 22 2563 210 38 62 chr1 196465802 196466262 -46198091 + L1ME1 LINE L1 2924 3353 -3291 1696 162 10 14 chr1 196466262 196466426 -46197927 - AluJb SINE Alu -16 296 132 218 32 32 0 chr1 196466426 196466457 -46197896 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1696 162 10 14 chr1 196466457 196466589 -46197764 - AluJb SINE Alu -180 132 1 2563 210 38 62 chr1 196466589 196467047 -46197306 + L1ME1 LINE L1 3353 3820 -2824 1641 219 106 45 chr1 196467050 196467608 -46196745 + L1ME1 LINE L1 4576 5167 -1477 2441 203 67 28 chr1 196468061 196469073 -46195280 + L1ME1 LINE L1 5155 6226 -438 256 274 0 0 chr1 196469073 196469146 -46195207 + (TA)n Simple_repeat Simple_repeat 1 73 0 794 157 59 129 chr1 196469169 196469424 -46194929 + L1ME1 LINE L1 6229 6465 -199 818 182 0 0 chr1 196469427 196469559 -46194794 + AluJb SINE Alu 2 133 -179 198 71 0 0 chr1 196469560 196469588 -46194765 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1022 144 21 16 chr1 196469588 196469782 -46194571 + AluJb SINE Alu 118 312 0 844 234 37 0 chr1 196469785 196469973 -46194380 + L1ME1 LINE L1 6464 6658 -6 1559 74 52 130 chr1 196469988 196470112 -46194241 + L1MA8 LINE L1 5990 6122 -169 1502 185 25 0 chr1 196470112 196470441 -46193912 + AluJo SINE Alu 1 336 0 1660 113 8 12 chr1 196470445 196470702 -46193651 + AluSx SINE Alu 3 258 -54 1559 74 52 130 chr1 196470702 196470895 -46193458 + L1MA8 LINE L1 6125 6288 -3 1552 157 27 31 chr1 196471397 196471690 -46192663 + AluJo SINE Alu 1 292 -20 679 125 54 9 chr1 196472348 196472460 -46191893 + FLAM_C SINE Alu 2 118 -25 1736 148 21 3 chr1 196472484 196472775 -46191578 + AluJb SINE Alu 3 298 -14 466 266 205 25 chr1 196472779 196473023 -46191330 - L2 LINE L2 -6 3307 3020 235 217 70 70 chr1 196473204 196473333 -46191020 + L1MC5 LINE L1 7806 7934 -27 1875 147 3 17 chr1 196473333 196473633 -46190720 + AluJb SINE Alu 1 296 -16 2174 85 3 3 chr1 196474742 196475035 -46189318 - AluSg SINE Alu -17 293 1 2106 99 17 0 chr1 196475054 196475346 -46189007 - AluSx SINE Alu -15 297 1 2304 166 17 5 chr1 196475366 196475776 -46188577 - L1MB3 LINE L1 -7 6176 5762 224 241 208 9 chr1 196477504 196477594 -46186759 - MIR SINE MIR -71 137 33 317 271 123 19 chr1 196478552 196478707 -46185646 - L3b LINE CR1 -205 1378 1208 1806 142 24 3 chr1 196480641 196480929 -46183424 + AluJb SINE Alu 2 295 -17 196 233 47 0 chr1 196481164 196481207 -46183146 + L2 LINE L2 3247 3291 -22 2097 105 0 0 chr1 196481606 196481914 -46182439 + AluSq SINE Alu 1 308 0 553 338 88 27 chr1 196481956 196482444 -46181909 - L2 LINE L2 -687 2627 2110 285 363 97 8 chr1 196482836 196482960 -46181393 + MIR3 SINE MIR 48 182 -26 573 211 99 129 chr1 196483684 196484035 -46180318 - L1MC5 LINE L1 -26 7935 7600 1405 190 39 14 chr1 196484035 196484314 -46180039 - AluJo SINE Alu -26 286 1 573 211 99 129 chr1 196484314 196484427 -46179926 - L1MC5 LINE L1 -361 7600 7485 2025 112 20 3 chr1 196484985 196485154 -46179199 - AluSx SINE Alu -12 300 122 189 0 0 0 chr1 196485154 196485175 -46179178 + (TA)n Simple_repeat Simple_repeat 2 22 0 2025 112 20 3 chr1 196485175 196485300 -46179053 - AluSx SINE Alu -190 122 1 988 279 64 6 chr1 196485439 196485751 -46178602 - L3 LINE CR1 -3 1574 1245 738 246 23 0 chr1 196486206 196486381 -46177972 + MIR SINE MIR 72 250 -12 261 286 0 0 chr1 196487321 196487384 -46176969 - Charlie8 DNA MER1_type -2275 142 80 677 304 27 11 chr1 196487384 196487568 -46176785 - MER91A DNA MER1_type -2 194 8 332 286 0 0 chr1 196487596 196487666 -46176687 - Charlie8 DNA MER1_type -2344 73 4 337 259 12 0 chr1 196489505 196489590 -46174763 + L1ME2 LINE L1 6069 6154 -10 245 216 45 131 chr1 196489666 196489697 -46174656 + L1MC4 LINE L1 7865 7897 -145 1827 145 3 31 chr1 196489697 196490014 -46174339 + AluJo SINE Alu 1 308 -4 245 216 45 131 chr1 196490014 196490158 -46174195 + L1MC4 LINE L1 7897 8025 -17 489 274 23 23 chr1 196490647 196490822 -46173531 + MER5B DNA MER1_type 1 175 -3 290 230 60 0 chr1 196492062 196492138 -46172215 + MIR3 SINE MIR 109 188 -20 1827 111 48 4 chr1 196492487 196492788 -46171565 - AluSx SINE Alu 0 313 1 329 197 28 0 chr1 196492788 196492859 -46171494 - L2 LINE L2 -6 3307 3235 1098 152 22 0 chr1 196492859 196493037 -46171316 + AluJb SINE Alu 118 299 -13 286 237 21 43 chr1 196493894 196493987 -46170366 + L3 LINE CR1 1486 1576 -1 343 220 110 0 chr1 196495970 196496061 -46168292 + MIR SINE MIR 51 151 -111 257 361 21 0 chr1 196496243 196496340 -46168013 - MIR SINE MIR -43 219 121 1262 115 91 5 chr1 196496673 196496881 -46167472 - AluJb SINE Alu -2 310 85 1790 168 3 19 chr1 196497039 196497348 -46167005 - AluJb SINE Alu -8 304 1 2274 65 7 10 chr1 196498166 196498457 -46165896 - AluSp SINE Alu -16 297 8 232 233 0 0 chr1 196499029 196499072 -46165281 + (CGTG)n Simple_repeat Simple_repeat 3 45 0 378 0 0 0 chr1 196500813 196500855 -46163498 + (CA)n Simple_repeat Simple_repeat 2 43 0 2403 77 0 0 chr1 196502426 196502725 -46161628 - AluSx SINE Alu -13 299 1 181 182 0 91 chr1 196502803 196502847 -46161506 + L3 LINE CR1 1430 1469 -108 1190 442 20 0 chr1 196502947 196503239 -46161114 - AluJo SINE Alu -3 299 2 223 187 80 67 chr1 196506365 196506440 -46157913 - MIR SINE MIR -177 85 10 289 105 0 0 chr1 196506696 196506734 -46157619 + Alu SINE Alu 2 39 -263 261 57 0 0 chr1 196506898 196506933 -46157420 + (TG)n Simple_repeat Simple_repeat 1 35 0 453 286 82 0 chr1 196508273 196508420 -46155933 - MIR SINE MIR -1 261 103 267 289 23 102 chr1 196508457 196508585 -46155768 + MIR SINE MIR 47 164 -98 269 299 0 82 chr1 196508840 196508974 -46155379 - L2 LINE L2 -19 3294 3172 1242 221 136 60 chr1 196509232 196509747 -46154606 + MLT1H1 LTR MaLR 2 555 0 304 263 33 38 chr1 196509967 196510270 -46154083 + L1ME4a LINE L1 5650 5951 -170 383 223 0 181 chr1 196511560 196511748 -46152605 + MER5B DNA MER1_type 1 154 -24 192 367 51 0 chr1 196511749 196511847 -46152506 - MIR3 SINE MIR -50 158 56 795 286 71 4 chr1 196511911 196512163 -46152190 + L3 LINE CR1 597 865 -712 1997 135 7 0 chr1 196512250 196512546 -46151807 + AluSx SINE Alu 1 298 -14 675 141 50 0 chr1 196512571 196512670 -46151683 + FLAM_A SINE Alu 1 104 -38 183 42 0 0 chr1 196512670 196512694 -46151659 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 591 194 150 31 chr1 196512854 196513014 -46151339 - MER5A DNA MER1_type -6 183 5 382 325 174 5 chr1 196513417 196513629 -46150724 + L3 LINE CR1 861 1108 -469 1033 228 31 20 chr1 196513630 196513884 -46150469 - MIR SINE MIR -2 260 4 541 326 78 20 chr1 196513947 196514192 -46150161 + L3 LINE CR1 1308 1566 -11 822 171 0 0 chr1 196514354 196514483 -46149870 + FLAM_A SINE Alu 2 130 -3 2236 109 0 0 chr1 196514663 196514967 -46149386 + AluSx SINE Alu 1 304 -8 572 122 68 35 chr1 196516983 196517104 -46147249 - MER11B LTR ERVK -656 610 473 3730 32 25 0 chr1 196517644 196518119 -46146234 - MER11B LTR ERVK -749 487 1 2383 78 0 7 chr1 196519602 196519908 -46144445 + AluSx SINE Alu 1 304 -8 1865 150 7 3 chr1 196520385 196520691 -46143662 + AluJb SINE Alu 1 307 -5 244 236 0 36 chr1 196520979 196521034 -46143319 - MIR3 SINE MIR -53 155 103 484 328 104 0 chr1 196521914 196522097 -46142256 - MIR SINE MIR -3 259 58 1516 108 0 0 chr1 196522228 196522431 -46141922 + AluSg/x SINE Alu 89 291 -19 2289 102 0 3 chr1 196522438 196522751 -46141602 + AluSx SINE Alu 1 312 0 256 254 146 31 chr1 196522754 196522884 -46141469 - MIR SINE MIR -28 234 90 1929 160 0 0 chr1 196523050 196523357 -46140996 + AluJo SINE Alu 1 307 -5 286 218 0 0 chr1 196523733 196523788 -46140565 - L2 LINE L2 -1 3312 3258 313 214 60 12 chr1 196524004 196524088 -46140265 - MIR SINE MIR -67 195 108 183 242 30 45 chr1 196524076 196524142 -46140211 + MIR3 SINE MIR 11 75 -133 * 394 315 115 9 chr1 196524849 196525076 -46139277 - MIR SINE MIR -3 259 9 719 242 66 47 chr1 196525558 196525781 -46138572 - MIR SINE MIR 0 262 31 1899 148 0 0 chr1 196525781 196526087 -46138266 - AluSx SINE Alu 0 306 1 719 242 66 47 chr1 196526087 196526118 -46138235 - MIR SINE MIR -231 31 2 482 260 107 60 chr1 196526289 196526323 -46138030 + L1ME4a LINE L1 5477 5508 -613 216 0 0 0 chr1 196526323 196526347 -46138006 + (CA)n Simple_repeat Simple_repeat 1 24 0 482 260 107 60 chr1 196526347 196526640 -46137713 + L1ME4a LINE L1 5508 5826 -295 1713 148 25 4 chr1 196526640 196526938 -46137415 + AluJb SINE Alu 1 304 0 482 260 107 60 chr1 196526938 196526974 -46137379 + L1ME4a LINE L1 5826 5859 -262 416 278 71 5 chr1 196527144 196527342 -46137011 + L1ME LINE L1 5604 5814 -307 787 246 131 11 chr1 196527355 196527615 -46136738 + L3 LINE CR1 1254 1544 -33 202 276 0 61 chr1 196529157 196529255 -46135098 + CT-rich Low_complexity Low_complexity 5 96 0 1181 191 0 17 chr1 196532358 196532594 -46131759 - AluJo SINE Alu -80 232 1 231 295 63 0 chr1 196532603 196532698 -46131655 + MIR SINE MIR 44 144 -118 180 111 0 0 chr1 196534017 196534044 -46130309 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 381 277 67 51 chr1 196534116 196534311 -46130042 + MIR SINE MIR 17 214 -48 929 187 82 0 chr1 196534483 196534654 -46129699 + MER5A DNA MER1_type 4 188 -1 616 357 74 29 chr1 196534708 196535297 -46129056 - L2 LINE L2 -231 3041 2414 813 261 158 21 chr1 196535422 196535851 -46128502 - L2 LINE L2 0 3313 2826 315 146 0 0 chr1 196536098 196536153 -46128200 + (GGA)n Simple_repeat Simple_repeat 3 57 0 218 105 26 0 chr1 196536155 196536193 -46128160 + A-rich Low_complexity Low_complexity 2 40 0 1947 149 0 0 chr1 196536227 196536522 -46127831 + AluSx SINE Alu 3 297 -15 951 104 0 28 chr1 196536883 196537027 -46127326 + AluSg/x SINE Alu 157 296 -16 249 195 24 12 chr1 196540563 196540645 -46123708 + GA-rich Low_complexity Low_complexity 2 84 0 2242 100 3 0 chr1 196541506 196541815 -46122538 + AluSx SINE Alu 1 310 -2 631 208 42 0 chr1 196542066 196542210 -46122143 + L1MB3 LINE L1 6032 6181 -2 201 147 0 0 chr1 196542216 196542250 -46122103 + (GA)n Simple_repeat Simple_repeat 2 35 0 190 347 13 0 chr1 196542254 196542329 -46122024 + MIR SINE MIR 21 96 -166 2315 87 0 0 chr1 196544131 196544430 -46119923 - AluSx SINE Alu -13 299 1 2268 196 70 17 chr1 196544499 196545030 -46119323 + L1ME1 LINE L1 5520 6078 -88 428 230 0 0 chr1 196545118 196545218 -46119135 + L1MA10 LINE L1 6226 6325 -9 236 174 0 22 chr1 196545530 196545576 -46118777 + MER5B DNA MER1_type 1 45 -133 2101 58 0 0 chr1 196545576 196545834 -46118519 - AluY SINE Alu -14 297 40 487 205 209 67 chr1 196546016 196546075 -46118278 + L1ME4a LINE L1 5616 5665 -456 2253 75 0 10 chr1 196546075 196546383 -46117970 + AluSg SINE Alu 5 309 -1 487 205 209 67 chr1 196546383 196546533 -46117820 + L1ME4a LINE L1 5665 5855 -266 319 298 333 6 chr1 196546676 196546844 -46117509 + MIR SINE MIR 21 243 -19 595 110 0 0 chr1 196547008 196547090 -46117263 + FLAM_C SINE Alu 28 109 -34 1244 191 0 30 chr1 196547136 196547403 -46116950 + AluJb SINE Alu 3 261 -51 625 253 38 57 chr1 196547522 196547801 -46116552 + L1M3 LINE L1 5016 5299 -972 2144 98 0 7 chr1 196547801 196548098 -46116255 + AluY SINE Alu 8 302 -9 625 253 38 57 chr1 196548098 196548163 -46116190 + L1M3 LINE L1 5299 5364 -907 2283 94 0 0 chr1 196548163 196548462 -46115891 + AluY SINE Alu 1 299 -12 625 253 38 57 chr1 196548462 196548573 -46115780 + L1M3 LINE L1 5364 5474 -797 2011 134 10 0 chr1 196548741 196549048 -46115305 - AluSx SINE Alu -2 310 1 1076 192 10 14 chr1 196549054 196549262 -46115091 - AluJo SINE Alu -20 292 86 265 208 42 69 chr1 196549678 196549750 -46114603 - L3 LINE CR1 -582 995 926 1088 217 30 18 chr1 196549902 196550167 -46114186 - MIR SINE MIR -1 261 1 202 330 44 84 chr1 196550231 196550434 -46113919 - L3 LINE CR1 -1048 529 335 254 238 191 12 chr1 196550479 196550563 -46113790 + L2 LINE L2 3212 3310 -3 204 303 13 13 chr1 196550639 196550715 -46113638 + L2 LINE L2 2971 3046 -226 183 333 63 16 chr1 196551003 196551066 -46113287 + MIR SINE MIR 2 67 -195 1480 150 16 78 chr1 196551106 196551413 -46112940 - AluJo SINE Alu -24 288 1 25 0 0 0 chr1 196551419 196551444 -46112909 + AT_rich Low_complexity Low_complexity 1 25 0 265 186 119 0 chr1 196552463 196552522 -46111831 + MIR SINE MIR 53 118 -90 190 275 0 0 chr1 196552522 196552562 -46111791 + MIR3 SINE MIR 157 196 -12 862 151 0 0 chr1 196552585 196552724 -46111629 + FLAM_C SINE Alu 1 139 -4 2112 115 0 3 chr1 196553049 196553345 -46111008 + AluSx SINE Alu 1 295 -17 1258 182 130 15 chr1 196553355 196553624 -46110729 + AluJb SINE Alu 1 300 -12 317 281 12 0 chr1 196553682 196553764 -46110589 + MIR SINE MIR 7 89 -173 396 0 0 0 chr1 196555470 196555514 -46108839 + (CA)n Simple_repeat Simple_repeat 2 45 0 234 222 0 0 chr1 196556814 196556868 -46107485 + CT-rich Low_complexity Low_complexity 4 57 0 869 102 0 16 chr1 196557643 196557771 -46106582 + MER39 LTR ERV1 582 707 0 2215 65 0 68 chr1 196558098 196558422 -46105931 - AluY SINE Alu -8 303 2 1099 242 41 65 chr1 196558720 196558915 -46105438 + LTR33 LTR ERVL 103 301 -220 1984 98 37 10 chr1 196558915 196559210 -46105143 - AluY SINE Alu -3 308 6 1099 242 41 65 chr1 196559210 196559431 -46104922 + LTR33 LTR ERVL 301 509 -12 552 341 171 40 chr1 196559444 196560370 -46103983 - L2 LINE L2 -659 2655 1609 2236 79 3 0 chr1 196560573 196560865 -46103488 + AluSp SINE Alu 2 294 -19 206 305 84 21 chr1 196561200 196561295 -46103058 + L2 LINE L2 2641 2741 -573 * 309 244 61 53 chr1 196561279 196561410 -46102943 + L2 LINE L2 3182 3313 0 317 215 183 11 chr1 196561492 196561585 -46102768 + L2 LINE L2 3201 3309 -4 2321 196 22 33 chr1 196561758 196562267 -46102086 + MLT1D LTR MaLR 3 505 0 346 339 25 0 chr1 196562427 196562545 -46101808 + L2 LINE L2 3152 3272 0 1703 176 0 7 chr1 196562630 196562926 -46101427 + AluJb SINE Alu 1 294 -18 1145 202 4 28 chr1 196563375 196563627 -46100726 + AluJo SINE Alu 1 246 -66 4831 143 46 26 chr1 196563939 196564548 -46099805 + L1MA9 LINE L1 5185 5825 -487 2047 116 3 28 chr1 196564548 196564867 -46099486 + AluSq SINE Alu 3 313 0 4831 143 46 26 chr1 196564867 196565206 -46099147 + L1MA9 LINE L1 5825 6156 -156 362 326 125 0 chr1 196566175 196566319 -46098034 + L2 LINE L2 3106 3267 -5 309 321 170 0 chr1 196566383 196566495 -46097858 - MIR3 SINE MIR -5 203 73 2185 112 0 3 chr1 196566690 196567002 -46097351 + AluSq SINE Alu 1 311 -2 2220 89 3 13 chr1 196567127 196567442 -46096911 + AluSx SINE Alu 1 312 0 285 98 0 0 chr1 196567808 196567849 -46096504 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 2312 81 0 10 chr1 196568129 196568436 -46095917 + AluSc SINE Alu 1 304 -5 680 0 0 0 chr1 196568483 196568556 -46095797 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 687 194 42 0 chr1 196568834 196568978 -46095375 + L1MA8 LINE L1 6142 6291 0 684 13 0 0 chr1 196568984 196569059 -46095294 - tRNA-Lys-AAA tRNA tRNA -1 75 1 2033 112 14 0 chr1 196569653 196569939 -46094414 + AluSx SINE Alu 1 290 -22 352 26 0 0 chr1 196570125 196570164 -46094189 + LTR8 LTR ERV1 546 584 -107 881 174 6 12 chr1 196570487 196570648 -46093705 + AluJb SINE Alu 2 161 -151 1005 143 41 10 chr1 196570750 196570946 -46093407 + AluJb SINE Alu 88 289 -23 245 192 50 91 chr1 196571224 196571323 -46093030 + MIR SINE MIR 95 189 -73 1925 95 4 0 chr1 196571658 196571911 -46092442 - AluSx SINE Alu -20 292 39 2148 102 0 7 chr1 196572245 196572549 -46091804 - AluSx SINE Alu -10 302 1 334 372 97 0 chr1 196572649 196572794 -46091559 - MIR3 SINE MIR -21 187 29 292 118 0 0 chr1 196572889 196572940 -46091413 - Alu SINE Alu 0 301 251 924 147 0 0 chr1 196572940 196573115 -46091238 + AluSc SINE Alu 138 312 0 662 142 0 38 chr1 196573172 196573278 -46091075 + FLAM_C SINE Alu 17 118 -25 1502 131 23 23 chr1 196573384 196573644 -46090709 - AluSx SINE Alu -12 300 41 269 170 38 0 chr1 196575127 196575180 -46089173 + MER94 DNA DNA 4 58 -76 270 212 59 47 chr1 196575491 196575576 -46088777 + L1MC/D LINE L1 5703 5788 -2020 1129 151 53 27 chr1 196575579 196575804 -46088549 + MLT1B LTR MaLR 1 231 -159 244 148 1 56 chr1 196575805 196575923 -46088430 + AluSc SINE Alu 242 299 0 650 176 0 0 chr1 196575933 196576035 -46088318 + FLAM_C SINE Alu 17 118 -25 894 132 46 13 chr1 196576130 196576282 -46088071 + MLT1B LTR MaLR 234 390 0 1503 98 0 0 chr1 196576369 196576574 -46087779 + AluSg SINE Alu 1 205 -105 2211 75 0 13 chr1 196576736 196577044 -46087309 - AluSq SINE Alu -9 304 1 2004 76 76 3 chr1 196577090 196577378 -46086975 - AluSq SINE Alu -2 311 3 350 305 40 85 chr1 196578312 196578370 -46085983 + MER5A DNA MER1_type 19 78 -111 2149 89 3 10 chr1 196578370 196578674 -46085679 + AluSx SINE Alu 1 302 -10 350 305 40 85 chr1 196578674 196578792 -46085561 + MER5A DNA MER1_type 78 187 -2 1254 196 4 23 chr1 196579114 196579379 -46084974 + AluJo SINE Alu 32 291 -21 1522 149 29 7 chr1 196579666 196579942 -46084411 + AluJb SINE Alu 11 292 -20 290 267 105 38 chr1 196579995 196580100 -46084253 - MER91C DNA MER1_type -28 112 1 255 61 0 0 chr1 196580935 196580968 -46083385 + (TTA)n Simple_repeat Simple_repeat 1 33 0 299 122 0 0 chr1 196580968 196581009 -46083344 - LTR8 LTR ERV1 -105 586 546 833 210 19 0 chr1 196581281 196581443 -46082910 - AluSx SINE Alu -67 243 79 3173 135 51 11 chr1 196581457 196581983 -46082370 - LTR10A LTR ERV1 -62 547 1 579 157 0 0 chr1 196582028 196582111 -46082242 - AluSx SINE Alu -228 84 2 2147 103 7 0 chr1 196582239 196582540 -46081813 + AluSg SINE Alu 1 303 -7 26 0 0 0 chr1 196583371 196583397 -46080956 + AT_rich Low_complexity Low_complexity 1 26 0 1309 194 4 36 chr1 196583404 196583683 -46080670 + AluJo SINE Alu 13 282 -30 1775 154 0 3 chr1 196583716 196584009 -46080344 + AluJb SINE Alu 2 293 -19 1577 132 20 4 chr1 196584410 196584660 -46079693 - AluSx SINE Alu -58 254 1 255 308 87 29 chr1 196584680 196584784 -46079569 - L2 LINE L2 -275 3038 2929 1735 97 8 20 chr1 196584964 196585212 -46079141 + AluSp SINE Alu 45 289 -24 1330 168 117 0 chr1 196585260 196585516 -46078837 + AluJb SINE Alu 1 286 -26 2343 63 0 3 chr1 196585694 196585995 -46078358 + AluY SINE Alu 1 300 -11 23 0 0 0 chr1 196586071 196586094 -46078259 + AT_rich Low_complexity Low_complexity 1 23 0 1722 158 30 16 chr1 196586301 196586604 -46077749 + AluJo SINE Alu 1 307 -5 566 203 203 12 chr1 196586727 196586890 -46077463 + MIR SINE MIR 45 238 -24 446 219 131 25 chr1 196586909 196587069 -46077284 - MLT1H LTR MaLR 0 549 373 277 227 91 73 chr1 196587178 196587288 -46077065 - MLT1H LTR MaLR -216 339 228 24 32 0 0 chr1 196587539 196587570 -46076783 + AT_rich Low_complexity Low_complexity 1 31 0 2375 76 0 0 chr1 196587774 196588078 -46076275 - AluY SINE Alu -7 304 1 1349 168 48 48 chr1 196588328 196588620 -46075733 + AluJb SINE Alu 1 292 -20 2093 75 40 0 chr1 196588697 196588975 -46075378 + AluSp SINE Alu 11 299 -14 21 0 0 0 chr1 196589388 196589409 -46074944 + AT_rich Low_complexity Low_complexity 1 21 0 1663 172 3 0 chr1 196591189 196591480 -46072873 - AluJb SINE Alu -9 303 12 456 267 146 69 chr1 196592210 196592588 -46071765 - L2 LINE L2 0 3313 2907 293 316 101 7 chr1 196592603 196592742 -46071611 - L2 LINE L2 -1991 1323 1172 2036 112 0 7 chr1 196592863 196593159 -46071194 + AluSq SINE Alu 1 294 -19 22 0 0 0 chr1 196593334 196593356 -46070997 + AT_rich Low_complexity Low_complexity 1 22 0 1053 216 88 47 chr1 196593788 196594233 -46070120 - L1MC5 LINE L1 -207 7754 7292 1535 181 0 4 chr1 196594708 196594973 -46069380 - AluJb SINE Alu -48 264 1 1652 168 6 25 chr1 196595083 196595399 -46068954 - AluJo SINE Alu 0 312 3 1553 177 6 13 chr1 196595796 196596107 -46068246 - AluJb SINE Alu -3 309 1 574 232 14 0 chr1 196596121 196596259 -46068094 - L1MD3 LINE L1 -10 7985 7846 2365 80 0 0 chr1 196596470 196596772 -46067581 - AluY SINE Alu -9 302 1 1986 99 3 27 chr1 196596862 196597156 -46067197 - AluSx SINE Alu -25 287 1 1693 146 64 0 chr1 196599497 196599660 -46064693 - AluSx SINE Alu -13 299 109 2110 107 7 0 chr1 196599660 196599959 -46064394 - AluSp SINE Alu -12 301 1 1693 146 64 0 chr1 196599959 196600076 -46064277 - AluSx SINE Alu -203 109 1 841 144 181 21 chr1 196600278 196600313 -46064040 + MER46B DNA MER2_type 2 30 -2701 2156 109 3 10 chr1 196600313 196600624 -46063729 - AluSc SINE Alu 0 309 1 841 144 181 21 chr1 196600624 196600776 -46063577 + MER46B DNA MER2_type 30 94 -142 1401 77 5 15 chr1 196600895 196601090 -46063263 + AluY SINE Alu 104 296 -15 507 46 15 0 chr1 196601093 196601158 -46063195 + MER46B DNA MER2_type 115 180 -56 2269 96 0 0 chr1 196601271 196601573 -46062780 + AluSq SINE Alu 1 302 -11 1596 147 3 80 chr1 196601967 196602281 -46062072 + AluJo SINE Alu 1 290 -22 476 316 53 27 chr1 196603808 196603995 -46060358 + L2 LINE L2 2167 2358 -956 889 111 29 88 chr1 196603999 196604170 -46060183 + AluJo SINE Alu 1 161 -151 427 317 58 22 chr1 196604198 196604422 -46059931 + L2 LINE L2 2827 3058 -255 644 238 131 56 chr1 196604496 196604748 -46059605 + L2 LINE L2 3043 3313 0 180 250 0 0 chr1 196605151 196605191 -46059162 + L2 LINE L2 3274 3313 0 1517 106 60 0 chr1 196605755 196605972 -46058381 - MER30 DNA MER1_type 0 230 1 986 126 57 0 chr1 196606504 196606663 -46057690 - FRAM SINE Alu -8 168 1 1987 126 0 14 chr1 196607409 196607702 -46056651 - AluSx SINE Alu -19 293 5 2259 144 71 27 chr1 196607733 196607963 -46056390 - MSTA LTR MaLR 0 428 170 1906 107 48 0 chr1 196607963 196608267 -46056086 - AluSx SINE Alu 0 317 1 2259 144 71 27 chr1 196608267 196608445 -46055908 - MSTA LTR MaLR -258 170 1 1032 180 184 0 chr1 196608453 196608692 -46055661 + L1ME2 LINE L1 5866 6148 -16 397 234 331 11 chr1 196608811 196608986 -46055367 + MIR SINE MIR 14 244 -18 278 239 0 15 chr1 196608980 196609047 -46055306 + L2 LINE L2 3018 3083 -189 * 400 283 6 19 chr1 196609339 196609498 -46054855 + (TGAA)n Simple_repeat Simple_repeat 4 160 0 523 221 18 43 chr1 196610299 196610462 -46053891 - L2 LINE L2 -26 3287 3129 344 242 22 0 chr1 196610491 196610582 -46053771 - LTR67 LTR ERVL -8 549 457 218 252 178 37 chr1 196610952 196611059 -46053294 - L2 LINE L2 -248 3024 2903 2170 208 40 58 chr1 196611410 196611510 -46052843 - L1MEc LINE L1 -3093 3122 3022 1521 158 3 42 chr1 196611510 196611821 -46052532 - AluJo SINE Alu -13 299 1 2170 208 40 58 chr1 196611821 196612345 -46052008 - L1MEc LINE L1 -3193 3022 2509 657 260 7 0 chr1 196612404 196612550 -46051803 - L1MEc LINE L1 -5757 639 493 813 158 34 0 chr1 196612551 196612742 -46051611 - AluJb SINE Alu 0 329 134 2076 112 30 0 chr1 196612752 196613048 -46051305 - AluSx SINE Alu -6 306 2 1726 241 20 26 chr1 196613051 196613507 -46050846 - L1MEc LINE L1 -5900 496 44 2238 97 0 13 chr1 196613609 196613917 -46050436 - AluSg SINE Alu -6 304 1 2807 309 72 9 chr1 196613973 196615041 -46049312 + ERVL LTR ERVL 3281 4415 -1349 2034 121 3 6 chr1 196615394 196615708 -46048645 - AluSq SINE Alu 0 313 1 617 263 0 0 chr1 196616082 196616215 -46048138 - FLAM_A SINE Alu 0 133 1 26 30 0 0 chr1 196616343 196616376 -46047977 + AT_rich Low_complexity Low_complexity 1 33 0 1675 155 3 14 chr1 196616582 196616872 -46047481 - AluJo SINE Alu -5 307 21 2068 108 7 0 chr1 196618123 196618411 -46045942 - AluSp SINE Alu -23 290 1 471 184 41 0 chr1 196618478 196618576 -46045777 - HsTC2 DNA Tc2 -3 1895 1794 304 239 217 7 chr1 196620353 196620491 -46043862 - L1ME2 LINE L1 -1 6163 5997 1402 175 32 32 chr1 196620574 196620854 -46043499 - AluJo SINE Alu -32 280 1 599 182 88 44 chr1 196620932 196620954 -46043399 - Charlie2a DNA MER1_type -1192 1670 1650 1290 182 104 0 chr1 196620954 196621223 -46043130 - AluJo SINE Alu -15 297 1 599 182 88 44 chr1 196621223 196621381 -46042972 - Charlie2a DNA MER1_type -1212 1650 1482 1678 159 0 11 chr1 196621424 196621731 -46042622 - AluJb SINE Alu 0 308 5 578 256 44 98 chr1 196621772 196622089 -46042264 - Charlie2a DNA MER1_type -2479 303 4 205 309 148 19 chr1 196622100 196622262 -46042091 - MER5A DNA MER1_type -6 183 1 916 43 26 0 chr1 196622269 196622385 -46041968 + MER30 DNA MER1_type 1 119 -111 2903 86 5 10 chr1 196622495 196622879 -46041474 - MER57B LTR ERV1 -52 382 1 203 297 47 0 chr1 196622879 196622943 -46041410 - L2 LINE L2 -12 3301 3235 573 341 81 10 chr1 196623010 196623394 -46040959 - L2 LINE L2 -355 2959 2549 219 296 74 25 chr1 196623453 196623534 -46040819 - MIR SINE MIR -130 132 48 350 189 124 119 chr1 196623667 196623759 -46040594 - L2 LINE L2 -810 2504 2414 2116 90 31 3 chr1 196623759 196624049 -46040304 + AluSx SINE Alu 1 298 -14 350 189 124 119 chr1 196624049 196624157 -46040196 - L2 LINE L2 -900 2414 2303 307 350 133 49 chr1 196624184 196624552 -46039801 - L2 LINE L2 -22 3250 2852 883 36 90 0 chr1 196624847 196624958 -46039395 - 5S rRNA rRNA 0 121 1 221 247 0 62 chr1 196625168 196625265 -46039088 - L2 LINE L2 -1949 1365 1275 1082 213 38 0 chr1 196625305 196625516 -46038837 - MER20 DNA MER1_type 0 219 1 201 257 135 14 chr1 196625538 196625612 -46038741 + L2 LINE L2 1180 1262 -2052 738 284 72 18 chr1 196625984 196626262 -46038091 + MLT1I LTR MaLR 116 408 -1 400 300 138 24 chr1 196626276 196626523 -46037830 - L2 LINE L2 -2493 821 547 192 77 0 0 chr1 196626532 196626558 -46037795 + (TG)n Simple_repeat Simple_repeat 1 26 0 359 272 0 33 chr1 196626558 196626650 -46037703 + L1MC4 LINE L1 6615 6703 -1339 188 260 282 44 chr1 196626681 196626862 -46037491 - L2 LINE L2 -2802 512 289 2256 84 10 3 chr1 196626874 196627184 -46037169 + AluSq SINE Alu 1 312 -1 693 188 77 33 chr1 196627343 196627524 -46036829 - MER5A DNA MER1_type 0 189 1 342 247 11 8 chr1 196628207 196628300 -46036053 + MIR3 SINE MIR 68 158 -50 1795 138 32 3 chr1 196629274 196629557 -46034796 + AluSx SINE Alu 1 291 -21 273 290 124 21 chr1 196629583 196629728 -46034625 - MIR3 SINE MIR -4 204 45 275 205 179 13 chr1 196629785 196629863 -46034490 - MIR SINE MIR -8 254 164 1374 162 143 0 chr1 196630168 196630434 -46033919 - AluSx SINE Alu -8 304 1 469 291 43 60 chr1 196630691 196630993 -46033360 - MER102b DNA MER1_type -6 335 39 301 293 182 20 chr1 196631082 196631280 -46033073 + L3 LINE CR1 1345 1574 -3 1843 158 32 56 chr1 196632276 196632336 -46032017 - MLT1A1 LTR MaLR 0 365 305 2048 139 0 0 chr1 196632336 196632638 -46031715 - AluSx SINE Alu -10 302 1 1843 158 32 56 chr1 196632638 196632951 -46031402 - MLT1A1 LTR MaLR -60 305 1 828 115 14 22 chr1 196633206 196633345 -46031008 - AluSg/x SINE Alu -3 306 169 1874 111 0 0 chr1 196633445 196633697 -46030656 - AluSx SINE Alu -58 254 3 1114 220 57 7 chr1 196634061 196634357 -46029996 + LTR37A LTR ERV1 77 387 -39 383 265 86 40 chr1 196634867 196635018 -46029335 - MIR SINE MIR -56 206 49 1795 93 3 67 chr1 196635026 196635326 -46029027 + AluSq SINE Alu 1 281 -32 261 0 0 0 chr1 196635326 196635355 -46028998 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 219 91 0 0 chr1 196636833 196636866 -46027487 - L2 LINE L2 0 3272 3240 597 238 104 24 chr1 196637627 196637791 -46026562 - MIR SINE MIR -58 204 28 256 62 0 0 chr1 196637846 196637878 -46026475 - MLT1K LTR MaLR -12 576 545 27 0 0 0 chr1 196638183 196638210 -46026143 + AT_rich Low_complexity Low_complexity 1 27 0 207 359 0 0 chr1 196638653 196638717 -46025636 + MIR SINE MIR 82 145 -117 2431 124 64 98 chr1 196639301 196639834 -46024519 - LTR8 LTR ERV1 0 691 177 327 238 48 22 chr1 196639881 196640017 -46024336 + MIR SINE MIR 57 197 -65 364 270 79 89 chr1 196640270 196640380 -46023973 - MIR SINE MIR -11 251 141 1621 164 7 17 chr1 196640380 196640679 -46023674 - AluJo SINE Alu -16 296 1 364 270 79 89 chr1 196640679 196640808 -46023545 - MIR SINE MIR -121 141 16 211 238 139 40 chr1 196641208 196641309 -46023044 + L2 LINE L2 3197 3307 -6 252 298 38 70 chr1 196641372 196641530 -46022823 - L2 LINE L2 -2 3311 3159 214 356 7 15 chr1 196641930 196642065 -46022288 - MIR SINE MIR -19 243 110 1696 167 32 32 chr1 196643073 196643385 -46020968 - AluJb SINE Alu 0 312 1 246 271 234 0 chr1 196643747 196643835 -46020518 + L2 LINE L2 3180 3298 -15 261 75 0 0 chr1 196643835 196643875 -46020478 + (TA)n Simple_repeat Simple_repeat 2 41 0 246 271 234 0 chr1 196643875 196643893 -46020460 + L2 LINE L2 3298 3311 -2 955 252 62 35 chr1 196643951 196644539 -46019814 - L1ME4a LINE L1 -21 6100 5447 1211 134 21 5 chr1 196644600 196644786 -46019567 - MER20 DNA MER1_type -24 195 7 246 102 271 0 chr1 196644800 196644859 -46019494 - MLT1K LTR MaLR 0 588 514 2235 92 51 0 chr1 196645806 196646099 -46018254 - AluSc SINE Alu -1 308 1 259 223 188 0 chr1 196646137 196646226 -46018127 + MIR SINE MIR 62 164 -64 2026 149 0 13 chr1 196646288 196646604 -46017749 + AluJb SINE Alu 1 312 0 420 252 172 0 chr1 196646863 196647014 -46017339 + MIR SINE MIR 74 250 -12 250 382 46 7 chr1 196647035 196647187 -46017166 - L2 LINE L2 -34 3279 3122 201 74 0 0 chr1 196648304 196648331 -46016022 + (TTTCC)n Simple_repeat Simple_repeat 1 27 0 2412 103 0 0 chr1 196648747 196649057 -46015296 - AluSx SINE Alu -1 311 2 781 153 0 29 chr1 196649060 196649255 -46015098 - FLAM_A SINE Alu 0 191 1 3566 131 22 23 chr1 196649256 196649757 -46014596 - L1MC1 LINE L1 -506 5827 5312 2139 111 10 0 chr1 196649757 196650084 -46014269 - AluSx SINE Alu 0 312 1 3566 131 22 23 chr1 196650084 196650304 -46014049 - L1MC1 LINE L1 -1021 5312 5093 347 322 119 53 chr1 196650366 196650745 -46013608 + L2 LINE L2 2836 3239 -33 708 269 125 0 chr1 196650759 196650975 -46013378 - MIR SINE MIR 0 262 20 1013 145 57 0 chr1 196651728 196651887 -46012466 - FRAM SINE Alu -8 168 1 2437 83 3 6 chr1 196652665 196652979 -46011374 - AluSq SINE Alu 0 313 1 342 304 29 10 chr1 196653130 196653232 -46011121 - L3 LINE CR1 -16 1561 1458 606 229 122 27 chr1 196653268 196653456 -46010897 - MIR SINE MIR -56 206 1 * 683 311 183 7 chr1 196653456 196653879 -46010474 - L3 LINE CR1 -118 1459 962 198 191 0 0 chr1 196654137 196654184 -46010169 + (TG)n Simple_repeat Simple_repeat 1 47 0 395 234 0 45 chr1 196655029 196655140 -46009213 + MIR SINE MIR 79 184 -78 211 270 198 36 chr1 196655944 196656055 -46008298 + MIR SINE MIR 21 149 -113 1600 146 48 16 chr1 196656069 196656378 -46007975 + L1MC1 LINE L1 6015 6333 0 776 310 84 55 chr1 196657538 196658193 -46006160 - L2 LINE L2 0 3272 2582 3471 127 74 10 chr1 196658621 196659241 -46005112 + L1MB2 LINE L1 5510 6169 -2 1906 168 21 0 chr1 196659291 196659582 -46004771 + AluJb SINE Alu 1 297 -15 1814 147 87 3 chr1 196659582 196659867 -46004486 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr1 196659940 196659964 -46004389 + AT_rich Low_complexity Low_complexity 1 24 0 2350 105 0 0 chr1 196661175 196661471 -46002882 - AluSg SINE Alu -14 296 1 2417 110 0 0 chr1 196661989 196662299 -46002054 - AluSq SINE Alu -2 311 2 656 279 121 0 chr1 196662443 196662683 -46001670 + L3 LINE CR1 1307 1575 -2 304 223 43 11 chr1 196663013 196663032 -46001321 - MIR SINE MIR -13 249 232 859 184 29 11 chr1 196663032 196663206 -46001147 - MER5B DNA MER1_type 0 178 2 304 223 43 11 chr1 196663206 196663275 -46001078 - MIR SINE MIR -30 232 158 898 189 61 11 chr1 196663275 196663455 -46000898 + MER5A DNA MER1_type 1 189 0 247 163 0 0 chr1 196664621 196664664 -45999689 + MIR SINE MIR 37 79 -129 513 298 11 45 chr1 196665053 196665231 -45999122 + MIR SINE MIR 21 192 -70 189 0 0 0 chr1 196666353 196666374 -45997979 + (TA)n Simple_repeat Simple_repeat 2 22 0 2102 117 4 4 chr1 196666381 196666662 -45997691 - AluSx SINE Alu -26 286 6 812 290 43 16 chr1 196666687 196666942 -45997411 + MIR SINE MIR 1 262 0 435 292 26 93 chr1 196667295 196667521 -45996832 + L3 LINE CR1 69 279 -1298 763 254 150 33 chr1 196667535 196668144 -45996209 + L2 LINE L2 2621 3306 -7 458 238 0 0 chr1 196668191 196668275 -45996078 + MER81 DNA DNA 2 85 -29 1172 337 67 25 chr1 196668308 196668738 -45995615 + L3 LINE CR1 370 841 -736 2283 93 3 10 chr1 196668738 196669048 -45995305 - AluSx SINE Alu -4 308 1 1172 337 67 25 chr1 196669048 196669306 -45995047 + L3 LINE CR1 841 1087 -490 695 230 39 0 chr1 196670609 196670787 -45993566 + MER5A DNA MER1_type 1 185 -4 202 182 18 36 chr1 196671571 196671626 -45992727 + CT-rich Low_complexity Low_complexity 3 56 0 24 32 0 0 chr1 196671865 196671896 -45992457 + AT_rich Low_complexity Low_complexity 1 31 0 2139 116 7 3 chr1 196674951 196675243 -45989110 - AluSx SINE Alu -19 293 1 192 77 0 0 chr1 196675380 196675406 -45988947 + (TG)n Simple_repeat Simple_repeat 2 27 0 216 248 80 88 chr1 196675983 196676120 -45988233 + L2 LINE L2 2940 3075 -197 599 283 34 15 chr1 196676541 196676746 -45987607 - MIR SINE MIR -7 255 47 255 284 32 27 chr1 196677445 196677591 -45986762 + MIR SINE MIR 20 162 -46 252 340 39 19 chr1 196678406 196678509 -45985844 + L2 LINE L2 3141 3245 -27 525 305 33 35 chr1 196678539 196678740 -45985613 - MIR SINE MIR -41 167 5 220 233 0 33 chr1 196679375 196679435 -45984918 + C-rich Low_complexity Low_complexity 4 61 0 434 255 69 14 chr1 196679827 196679972 -45984381 + MIR SINE MIR 60 212 -50 281 89 22 0 chr1 196680030 196680075 -45984278 - HSMAR1 DNA Mariner 0 1287 1242 561 244 72 43 chr1 196680138 196680347 -45984006 - L1ME3 LINE L1 -8 6154 5940 403 318 73 60 chr1 196681021 196681389 -45982964 + L2 LINE L2 2854 3226 -46 478 258 118 34 chr1 196681425 196681603 -45982750 - MER112 DNA MER1_type -18 242 50 207 100 0 0 chr1 196681606 196681636 -45982717 + (T)n Simple_repeat Simple_repeat 1 30 0 297 291 174 23 chr1 196681772 196681944 -45982409 - MIR SINE MIR -15 247 50 302 285 174 14 chr1 196682406 196682613 -45981740 + L2 LINE L2 3032 3271 -1 202 270 16 16 chr1 196682614 196682677 -45981676 + GA-rich Low_complexity Low_complexity 3 65 0 206 181 319 0 chr1 196683056 196683128 -45981225 + MIR SINE MIR 75 169 -93 1833 163 60 16 chr1 196684057 196684083 -45980270 + L1PA16 LINE L1 5767 5790 -376 2369 84 38 3 chr1 196684083 196684426 -45979927 + THE1A LTR MaLR 1 355 0 1833 163 60 16 chr1 196684426 196684779 -45979574 + L1PA16 LINE L1 5790 6163 -3 366 239 0 83 chr1 196685583 196685657 -45978696 + MIR3 SINE MIR 88 152 -56 957 176 10 31 chr1 196685657 196685850 -45978503 + MER5A DNA MER1_type 1 189 0 366 239 0 83 chr1 196685850 196685884 -45978469 + MIR3 SINE MIR 152 187 -21 423 0 0 0 chr1 196685926 196685973 -45978380 + (TA)n Simple_repeat Simple_repeat 1 47 0 308 181 48 0 chr1 196686288 196686371 -45977982 + L1MB8 LINE L1 6092 6178 0 1659 175 10 42 chr1 196686611 196686919 -45977434 + AluJo SINE Alu 1 298 -14 2256 114 7 0 chr1 196687018 196687317 -45977036 + AluSx SINE Alu 1 301 -11 2398 77 0 10 chr1 196687320 196687619 -45976734 + AluY SINE Alu 2 297 -14 1167 166 106 69 chr1 196687644 196687994 -45976359 + MLT1A1 LTR MaLR 1 363 -2 287 277 177 28 chr1 196687997 196688138 -45976215 - MIR SINE MIR -73 189 28 330 340 125 13 chr1 196688170 196688402 -45975951 - MIR SINE MIR 0 262 5 1527 223 55 20 chr1 196689053 196689480 -45974873 + MLT1C LTR MaLR 1 399 -29 498 224 0 0 chr1 196689481 196689588 -45974765 + MIR SINE MIR 52 158 -104 291 299 35 0 chr1 196689877 196689964 -45974389 + MIR3 SINE MIR 114 203 -5 31 44 0 0 chr1 196689964 196690009 -45974344 + AT_rich Low_complexity Low_complexity 1 45 0 433 221 45 91 chr1 196691061 196691123 -45973230 + MER5B DNA MER1_type 4 67 -111 1467 160 12 100 chr1 196691123 196691454 -45972899 + AluJb SINE Alu 1 302 -10 433 221 45 91 chr1 196691454 196691545 -45972808 + MER5B DNA MER1_type 67 150 -28 413 234 23 128 chr1 196691606 196691824 -45972529 + L1MC5 LINE L1 7723 7917 -44 205 283 0 0 chr1 196691838 196691884 -45972469 - MER5B DNA MER1_type -131 47 2 432 0 0 0 chr1 196692315 196692363 -45971990 + (TG)n Simple_repeat Simple_repeat 2 49 0 401 279 27 0 chr1 196692957 196693068 -45971285 - MIR SINE MIR -62 200 87 2640 59 0 3 chr1 196693072 196693379 -45970974 - AluSg1 SINE Alu -3 306 1 209 152 47 0 chr1 196693977 196694021 -45970332 + MIR SINE MIR 107 150 -61 1684 157 16 26 chr1 196694021 196694327 -45970026 + AluJo SINE Alu 1 303 -9 697 204 136 0 chr1 196694380 196694565 -45969788 - MIR SINE MIR -5 257 39 201 217 22 0 chr1 196694582 196694628 -45969725 + (TA)n Simple_repeat Simple_repeat 2 48 0 2351 148 8 16 chr1 196694717 196695082 -45969271 - MLT1A1 LTR MaLR -1 364 3 2680 108 7 7 chr1 196695691 196696097 -45968256 + MER65A LTR ERV1 40 445 0 250 140 20 40 chr1 196696110 196696160 -45968193 + MIR SINE MIR 106 154 -108 637 274 87 33 chr1 196696174 196696415 -45967938 - MIR SINE MIR -2 260 7 213 226 19 0 chr1 196696632 196696685 -45967668 + (TG)n Simple_repeat Simple_repeat 2 55 0 21 36 0 0 chr1 196696864 196696892 -45967461 + AT_rich Low_complexity Low_complexity 1 28 0 305 241 134 36 chr1 196748237 196748349 -45916004 - MIR SINE MIR -120 142 20 257 250 43 54 chr1 196748570 196748662 -45915691 - MIR SINE MIR -50 212 122 1994 125 38 22 chr1 196748674 196749043 -45915310 - THE1C LTR MaLR 0 375 1 772 179 95 0 chr1 196749677 196749867 -45914486 + MER33 DNA MER1_type 59 266 -58 187 286 18 18 chr1 196749905 196749961 -45914392 + MIR SINE MIR 23 78 -184 260 282 13 13 chr1 196750586 196750664 -45913689 + G-rich Low_complexity Low_complexity 1 78 0 704 196 49 0 chr1 196750817 196750960 -45913393 + MER33 DNA MER1_type 5 154 -170 1477 209 93 67 chr1 196751147 196751695 -45912658 + MLT1E2 LTR MaLR 17 621 -5 317 218 139 10 chr1 196751798 196751899 -45912454 - MER81 DNA DNA 0 114 1 306 313 0 0 chr1 196752468 196752551 -45911802 + C-rich Low_complexity Low_complexity 1 83 0 373 323 138 16 chr1 196752687 196752876 -45911477 + MIR SINE MIR 48 259 -3 293 267 178 30 chr1 196752925 196753060 -45911293 - MER5A DNA MER1_type 0 189 35 216 286 44 55 chr1 196753261 196753352 -45911001 - MIR3 SINE MIR -20 188 99 544 101 13 0 chr1 196753356 196753435 -45910918 - MADE1 DNA Mariner 0 80 1 213 333 35 0 chr1 196753460 196753547 -45910806 + MIR3 SINE MIR 112 201 -7 507 225 84 7 chr1 196753684 196753826 -45910527 - MIR SINE MIR 0 262 110 2044 152 0 3 chr1 196753831 196754133 -45910220 + AluJo SINE Alu 3 303 -9 1056 173 12 0 chr1 196754137 196754305 -45910048 + FRAM SINE Alu 1 167 -9 456 200 111 0 chr1 196754311 196754401 -45909952 - MIR SINE MIR -150 112 13 249 266 170 32 chr1 196754611 196754705 -45909648 + MIR SINE MIR 34 140 -68 674 263 11 39 chr1 196754987 196755166 -45909187 - MER63A DNA MER1_type 0 210 37 1921 136 3 29 chr1 196755538 196755846 -45908507 - AluJb SINE Alu -12 300 1 247 318 61 53 chr1 196755899 196756031 -45908322 - L2 LINE L2 -17 3255 3123 2667 52 0 0 chr1 196756152 196756459 -45907894 - AluY SINE Alu -4 307 1 338 200 96 37 chr1 196756564 196756699 -45907654 - L1ME4a LINE L1 -34 6087 5945 908 268 75 57 chr1 196756715 196757156 -45907197 - HAL1 LINE L1 -745 1762 1314 306 161 16 0 chr1 196757211 196757273 -45907080 + L1M4 LINE L1 5725 5787 -397 2094 117 3 3 chr1 196757276 196757559 -45906794 + AluSx SINE Alu 4 286 -26 213 39 0 0 chr1 196757592 196757618 -45906735 + (CA)n Simple_repeat Simple_repeat 2 27 0 297 244 42 98 chr1 196757759 196757952 -45906401 - HAL1 LINE L1 -1485 1022 841 2408 110 0 0 chr1 196757958 196758268 -45906085 - AluSx SINE Alu -2 310 1 452 353 129 37 chr1 196758345 196758918 -45905435 - HAL1 LINE L1 -1881 626 1 279 0 0 0 chr1 196759601 196759632 -45904721 + (TG)n Simple_repeat Simple_repeat 1 31 0 323 211 26 13 chr1 196759710 196759786 -45904567 + MIR SINE MIR 186 262 0 305 280 131 9 chr1 196760342 196760449 -45903904 + L2 LINE L2 3141 3260 -12 273 29 0 0 chr1 196760540 196760574 -45903779 + (CA)n Simple_repeat Simple_repeat 2 35 0 207 0 0 0 chr1 196760573 196760596 -45903757 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 183 80 0 0 chr1 196761075 196761100 -45903253 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 261 188 87 14 chr1 196761196 196761265 -45903088 + L1ME3 LINE L1 5893 5966 -204 346 219 50 113 chr1 196761269 196761429 -45902924 + L1ME3 LINE L1 6011 6160 -2 315 277 90 54 chr1 196761447 196761613 -45902740 - MER5A DNA MER1_type 0 189 18 394 289 120 0 chr1 196762326 196762468 -45901885 - MIR SINE MIR -20 242 84 251 357 70 25 chr1 196762584 196762741 -45901612 - MIR SINE MIR -50 212 49 191 256 171 12 chr1 196762939 196763021 -45901332 - MIR SINE MIR -72 136 42 670 181 0 23 chr1 196765417 196765550 -45898803 - FLAM_C SINE Alu -3 130 1 292 231 0 0 chr1 196766441 196766493 -45897860 - L2 LINE L2 -14 3258 3207 199 200 0 0 chr1 196766574 196766609 -45897744 + MIR SINE MIR 68 102 -160 680 237 70 33 chr1 196766623 196766789 -45897564 + L1MD2 LINE L1 5726 5884 -475 2367 105 0 3 chr1 196766789 196767095 -45897258 + AluSx SINE Alu 3 307 -5 680 237 70 33 chr1 196767095 196767512 -45896841 + L1MD2 LINE L1 5884 6358 -1 394 196 49 10 chr1 196767523 196767625 -45896728 + MIR SINE MIR 157 262 0 479 337 78 11 chr1 196767667 196767937 -45896416 - L2 LINE L2 -89 3183 2896 388 238 30 85 chr1 196768402 196768421 -45895932 + MIR SINE MIR 16 34 -216 2299 104 0 0 chr1 196768421 196768709 -45895644 + AluSx SINE Alu 1 288 -24 388 238 30 85 chr1 196768709 196768875 -45895478 + MIR SINE MIR 34 183 -67 2036 147 0 3 chr1 196768933 196769233 -45895120 - AluJo SINE Alu -13 299 1 456 324 56 69 chr1 196769506 196770051 -45894302 - L2 LINE L2 -49 3223 2682 1060 316 183 9 chr1 196770520 196771303 -45893050 - L2 LINE L2 -1180 2134 1140 357 43 0 0 chr1 196771303 196771350 -45893003 + (TG)n Simple_repeat Simple_repeat 2 48 0 1060 316 183 9 chr1 196771350 196771559 -45892794 - L2 LINE L2 -2174 1140 969 207 0 0 0 chr1 196771559 196771582 -45892771 + (A)n Simple_repeat Simple_repeat 1 23 0 199 328 154 29 chr1 196771672 196772023 -45892330 - L2 LINE L2 -2385 929 535 246 297 81 18 chr1 196772132 196772243 -45892110 + MIR SINE MIR 16 133 -75 226 311 0 16 chr1 196773065 196773126 -45891227 + L2 LINE L2 3253 3312 -1 567 291 103 14 chr1 196773248 196773461 -45890892 - MIR SINE MIR -10 252 21 180 0 0 0 chr1 196774213 196774233 -45890120 + (TCCCC)n Simple_repeat Simple_repeat 3 22 0 345 250 43 43 chr1 196774940 196775056 -45889297 + MIR3 SINE MIR 41 156 -52 1919 176 58 54 chr1 196775180 196775681 -45888672 - MLT1D LTR MaLR 0 505 3 306 0 0 0 chr1 196776049 196776083 -45888270 + (TG)n Simple_repeat Simple_repeat 2 35 0 217 314 89 28 chr1 196776475 196776581 -45887772 + MIR SINE MIR 33 143 -77 241 194 194 0 chr1 196776698 196776760 -45887593 - MIR SINE MIR -6 256 183 * 626 249 172 14 chr1 196776756 196776977 -45887376 + MIR SINE MIR 7 262 0 425 285 111 6 chr1 196776940 196777112 -45887241 - MIR SINE MIR -39 223 34 * 841 273 112 21 chr1 196778363 196778918 -45885435 + L2 LINE L2 2700 3308 -5 599 238 72 33 chr1 196780021 196780202 -45884151 + MIR SINE MIR 74 261 -1 2165 120 24 0 chr1 196780869 196781160 -45883193 - AluSx SINE Alu -14 298 1 186 43 0 0 chr1 196781238 196781261 -45883092 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1096 209 13 17 chr1 196781263 196781493 -45882860 - MIR SINE MIR -13 249 21 417 242 58 8 chr1 196781484 196781604 -45882749 + L2 LINE L2 3186 3311 -2 * 356 399 25 0 chr1 196782417 196782580 -45881773 + MIR SINE MIR 81 247 -15 395 250 0 0 chr1 196782882 196782966 -45881387 + L2 LINE L2 3230 3313 0 191 146 24 0 chr1 196783586 196783627 -45880726 + GA-rich Low_complexity Low_complexity 3 44 0 197 200 22 22 chr1 196787705 196787750 -45876603 - L2 LINE L2 -839 2475 2431 276 260 27 0 chr1 196788334 196788407 -45875946 - MIR SINE MIR 0 262 188 353 273 107 13 chr1 196789252 196789402 -45874951 - MER5A DNA MER1_type -18 171 8 254 148 93 19 chr1 196789508 196789562 -45874791 + MER69 DNA AcHobo 1 58 -2468 368 208 50 0 chr1 196789724 196789825 -45874528 + MER69 DNA AcHobo 2379 2484 -42 2292 113 0 0 chr1 196790159 196790451 -45873902 - AluSx SINE Alu -20 292 1 2003 106 30 0 chr1 196790456 196790721 -45873632 - AluSg SINE Alu -3 307 35 246 163 0 0 chr1 196791314 196791357 -45872996 - MER112 DNA MER1_type -5 255 213 2307 112 0 0 chr1 196791388 196791692 -45872661 + AluSg SINE Alu 1 304 -6 556 275 105 6 chr1 196792213 196792384 -45871969 - MER5A DNA MER1_type -1 188 1 532 223 102 6 chr1 196792976 196793133 -45871220 - MER96 DNA MER1_type -1 174 3 782 48 10 0 chr1 196793181 196793284 -45871069 + (GA)n Simple_repeat Simple_repeat 2 105 0 310 365 30 6 chr1 196793604 196793771 -45870582 - L3b LINE CR1 -128 1455 1285 848 203 112 26 chr1 196793974 196794206 -45870147 - MER31B LTR ERV1 -214 252 1 466 292 22 75 chr1 196794830 196795056 -45869297 + MIR SINE MIR 20 233 -29 195 322 141 28 chr1 196795068 196795245 -45869108 + L2 LINE L2 2525 2721 -593 3644 147 85 10 chr1 196795516 196796140 -45868213 - LTR51 LTR ERV1 0 671 1 341 42 0 21 chr1 196796927 196796975 -45867378 + (CA)n Simple_repeat Simple_repeat 1 47 0 196 283 57 0 chr1 196797491 196797544 -45866809 + L2 LINE L2 3217 3272 0 996 282 120 34 chr1 196797549 196797992 -45866361 - L2 LINE L2 -15 3298 2818 380 268 102 39 chr1 196798012 196798217 -45866136 + L2 LINE L2 3030 3247 -66 298 243 0 0 chr1 196798333 196798403 -45865950 + L3 LINE CR1 571 640 -937 337 264 44 11 chr1 196798486 196798577 -45865776 - L2 LINE L2 -1 3271 3178 264 303 61 61 chr1 196798620 196798752 -45865601 - L2 LINE L2 -14 3258 3127 286 287 78 9 chr1 196799412 196799527 -45864826 + L3 LINE CR1 417 539 -1038 322 318 147 9 chr1 196800118 196800329 -45864024 + L3 LINE CR1 787 1026 -551 43 56 0 0 chr1 196802294 196802365 -45861988 + AT_rich Low_complexity Low_complexity 1 71 0 263 149 0 21 chr1 196802922 196802969 -45861384 + L2 LINE L2 3225 3270 -2 2799 169 49 54 chr1 196803454 196804070 -45860283 + L1MD2 LINE L1 5583 6197 -162 3323 157 8 15 chr1 196804070 196804605 -45859748 - LTR26B LTR ERV1 0 531 1 2799 169 49 54 chr1 196804605 196804639 -45859714 + L1MD2 LINE L1 6197 6230 -129 589 199 38 0 chr1 196804681 196804812 -45859541 + L1MD2 LINE L1 6223 6358 -1 2599 62 0 0 chr1 196805486 196805791 -45858562 - AluY SINE Alu -6 305 1 396 55 0 0 chr1 196806359 196806414 -45857939 + (CA)n Simple_repeat Simple_repeat 1 55 0 821 307 16 20 chr1 196806452 196806706 -45857647 + MIR SINE MIR 7 259 -3 712 291 108 16 chr1 196806761 196807012 -45857341 + L2 LINE L2 2998 3271 -1 1637 160 94 0 chr1 196807072 196807347 -45857006 + AluJb SINE Alu 1 301 -11 850 159 7 0 chr1 196807356 196807494 -45856859 + FLAM_C SINE Alu 1 139 -4 225 309 52 52 chr1 196807525 196807661 -45856692 + L2 LINE L2 2920 3055 -217 366 243 141 41 chr1 196807771 196807954 -45856399 + MIR SINE MIR 5 208 -54 485 318 52 10 chr1 196808024 196808074 -45856279 - MIR SINE MIR -16 246 200 2269 125 3 0 chr1 196808074 196808379 -45855974 - AluSx SINE Alu -6 306 1 485 318 52 10 chr1 196808379 196808520 -45855833 - MIR SINE MIR -62 200 47 277 322 85 17 chr1 196808718 196808836 -45855517 + L2 LINE L2 3143 3268 -4 182 337 79 11 chr1 196809452 196809541 -45854812 + L2 LINE L2 2959 3053 -219 350 287 93 0 chr1 196812104 196812212 -45852141 + MIR SINE MIR 79 196 -66 198 0 0 0 chr1 196812423 196812445 -45851908 + (CA)n Simple_repeat Simple_repeat 2 23 0 243 231 0 0 chr1 196813173 196813225 -45851128 - 5S rRNA rRNA -67 54 3 2486 67 0 3 chr1 196814058 196814355 -45849998 + AluY SINE Alu 1 296 -15 336 376 51 29 chr1 196814779 196815053 -45849300 - L2 LINE L2 -78 3194 2915 924 186 17 12 chr1 196815935 196816107 -45848246 - MER5A DNA MER1_type -6 183 11 488 181 0 67 chr1 196816331 196816436 -45847917 + MER5A DNA MER1_type 1 98 -91 1102 268 63 27 chr1 196816454 196816864 -45847489 - MER74B LTR ERVL -142 480 56 353 244 44 0 chr1 196816864 196816954 -45847399 + MER5A DNA MER1_type 92 185 -4 382 273 94 0 chr1 196817159 196817287 -45847066 + MIR3 SINE MIR 62 201 -7 296 283 167 8 chr1 196817297 196817417 -45846936 + MIR SINE MIR 118 256 -6 806 208 2 55 chr1 196817624 196817841 -45846512 + MIR SINE MIR 27 233 -29 249 217 60 36 chr1 196818438 196818521 -45845832 + MIR SINE MIR 47 131 -77 693 233 0 31 chr1 196818638 196818801 -45845552 + MIR SINE MIR 77 234 -28 265 330 73 9 chr1 196820001 196820110 -45844243 - L2 LINE L2 -7 3265 3150 219 69 0 0 chr1 196820258 196820287 -45844066 + (GA)n Simple_repeat Simple_repeat 1 29 0 182 273 94 47 chr1 196820589 196820717 -45843636 - MIR SINE MIR -117 145 12 230 288 45 0 chr1 196821682 196821748 -45842605 - L2 LINE L2 0 3313 3245 1086 104 0 0 chr1 196821823 196821958 -45842395 + AluSq/x SINE Alu 3 137 -175 2414 87 0 0 chr1 196821958 196822257 -45842096 + AluY SINE Alu 1 299 -12 2113 223 170 14 chr1 196822418 196823128 -45841225 - L2 LINE L2 -294 3019 2204 896 88 0 0 chr1 196823128 196823264 -45841089 + AluSp/q SINE Alu 174 309 0 226 178 0 0 chr1 196823264 196823309 -45841044 - L2 LINE L2 -1096 2218 2174 1656 186 82 12 chr1 196823409 196823793 -45840560 - L1ME LINE L1 -453 5713 5297 2196 139 0 0 chr1 196823793 196824096 -45840257 - AluSg SINE Alu -7 303 1 1656 186 82 12 chr1 196824096 196824124 -45840229 - L1ME LINE L1 -869 5297 5272 354 98 0 0 chr1 196824124 196824175 -45840178 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 1712 187 7 23 chr1 196824176 196824481 -45839872 - AluJo SINE Alu -12 300 1 869 191 66 97 chr1 196824486 196824753 -45839600 - L1ME LINE L1 -869 5277 5023 2036 128 0 11 chr1 196824753 196825076 -45839277 - AluSx SINE Alu 0 323 4 869 191 66 97 chr1 196825076 196825200 -45839153 - L1ME LINE L1 -1123 5023 4897 1778 204 28 6 chr1 196826352 196826709 -45837644 - MLT1A1 LTR MaLR 0 365 1 1905 157 13 7 chr1 196826775 196827075 -45837278 - AluJo SINE Alu -10 302 1 205 267 40 10 chr1 196827232 196827333 -45837020 + (CA)n Simple_repeat Simple_repeat 2 105 0 743 308 35 6 chr1 196828205 196828451 -45835902 - MIR SINE MIR -1 261 10 227 197 0 45 chr1 196828642 196828708 -45835645 - L1MC4 LINE L1 -1332 6710 6648 3801 188 70 5 chr1 196828847 196829602 -45834751 - MER21B LTR ERV1 -48 815 12 351 325 38 19 chr1 196829617 196829774 -45834579 + MIR3 SINE MIR 42 201 -7 1724 188 46 13 chr1 196830673 196831045 -45833308 + MER63B DNA MER1_type 1 384 -52 1301 171 40 58 chr1 196831408 196831439 -45832914 - MER58B DNA MER1_type -2083 337 307 2236 127 0 10 chr1 196831439 196831753 -45832600 + AluJo SINE Alu 1 311 -1 1301 171 40 58 chr1 196831753 196832048 -45832305 - MER58B DNA MER1_type -2113 307 17 269 284 74 42 chr1 196832184 196832279 -45832074 - MIR SINE MIR -71 137 40 180 125 125 0 chr1 196832691 196832731 -45831622 + MIR3 SINE MIR 153 197 -11 296 248 50 78 chr1 196832779 196832997 -45831356 - L1MC4 LINE L1 -3 8039 7828 411 233 70 81 chr1 196833246 196833418 -45830935 + MIR SINE MIR 37 206 -56 1684 161 30 10 chr1 196833983 196834281 -45830072 + AluSg SINE Alu 1 304 -6 1126 165 69 5 chr1 196834415 196834633 -45829720 + AluJo SINE Alu 60 291 -21 1144 184 115 0 chr1 196834656 196834934 -45829419 - L1ME LINE L1 -573 5591 5282 381 245 88 54 chr1 196834997 196835085 -45829268 - L1ME LINE L1 -886 5260 5164 2089 102 133 65 chr1 196835085 196835444 -45828909 + MSTA LTR MaLR 2 392 -36 2405 107 7 0 chr1 196835444 196835754 -45828599 - AluSx SINE Alu 0 312 1 2089 102 133 65 chr1 196835754 196835794 -45828559 + MSTA LTR MaLR 392 428 0 381 245 88 54 chr1 196835794 196835852 -45828501 - L1ME LINE L1 -982 5164 5109 297 295 27 40 chr1 196835942 196836091 -45828262 + L2 LINE L2 1704 1850 -1464 334 290 0 0 chr1 196836396 196836489 -45827864 + FLAM SINE Alu 38 130 -3 206 294 0 0 chr1 196836772 196836823 -45827530 - L2 LINE L2 -83 3189 3139 617 258 98 74 chr1 196837082 196837491 -45826862 + MLT1J2 LTR MaLR 21 446 0 564 165 119 23 chr1 196837519 196837695 -45826658 + L1ME4a LINE L1 5926 6118 -3 210 296 207 28 chr1 196838176 196838355 -45825998 + L2 LINE L2 1982 2192 -1122 240 312 102 38 chr1 196838498 196838684 -45825669 + L2 LINE L2 2443 2640 -674 275 127 0 36 chr1 196838762 196838817 -45825536 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 1104 188 0 0 chr1 196838817 196838998 -45825355 - AluJb SINE Alu 0 312 132 3253 21 0 5 chr1 196839008 196839383 -45824970 + L1PA4 LINE L1 5778 6150 -5 521 229 153 8 chr1 196839475 196839630 -45824723 + MIR SINE MIR 47 226 -36 308 241 76 13 chr1 196840620 196840699 -45823654 + MIR SINE MIR 70 153 -109 2061 148 20 0 chr1 196840764 196841069 -45823284 + AluSx SINE Alu 1 311 -1 1020 118 34 17 chr1 196841316 196841494 -45822859 + MER96B DNA MER1_type? 2 182 -235 464 261 8 134 chr1 196841689 196841804 -45822549 + MIR SINE MIR 29 92 -170 2363 100 0 3 chr1 196841804 196842115 -45822238 - AluSx SINE Alu -2 310 1 464 261 8 134 chr1 196842115 196842267 -45822086 + MIR SINE MIR 92 262 0 1200 161 4 52 chr1 196843136 196843366 -45820987 + MER20 DNA MER1_type 1 219 0 685 120 0 0 chr1 196843646 196843746 -45820607 - AluJ SINE Alu -3 309 210 270 152 0 0 chr1 196843746 196843792 -45820561 - MLT2B1 LTR ERVL -372 148 103 1085 205 5 19 chr1 196843792 196844007 -45820346 - AluJ SINE Alu -100 212 1 316 335 76 38 chr1 196844086 196844349 -45820004 + LTR33 LTR ERVL 146 418 -103 296 119 68 0 chr1 196844359 196844418 -45819935 - MLT2B1 LTR ERVL 0 520 458 329 75 19 0 chr1 196844418 196844471 -45819882 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 657 113 28 23 chr1 196844484 196844661 -45819692 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 629 112 28 28 chr1 196844687 196844865 -45819488 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 2159 199 49 28 chr1 196844872 196844911 -45819442 - MLT2B1 LTR ERVL -42 478 441 2477 111 25 3 chr1 196844911 196845264 -45819089 + THE1B LTR MaLR 1 361 -3 325 39 39 0 chr1 196845266 196845317 -45819036 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2159 199 49 28 chr1 196845317 196845742 -45818611 - MLT2B1 LTR ERVL -79 441 1 544 152 10 20 chr1 196845742 196845841 -45818512 + LTR33 LTR ERVL 424 521 0 374 257 40 20 chr1 196845846 196845947 -45818406 - L2 LINE L2 0 3313 3211 303 319 11 0 chr1 196846149 196846243 -45818110 + MIR3 SINE MIR 65 159 -49 572 305 43 9 chr1 196846956 196847166 -45817187 - MIR SINE MIR -41 221 5 242 407 60 5 chr1 196848409 196848608 -45815745 - MIR SINE MIR -16 246 37 1731 204 14 6 chr1 196848626 196848974 -45815379 - MLT1A1 LTR MaLR -4 361 11 444 241 147 0 chr1 196849031 196849147 -45815206 - L2 LINE L2 0 3313 3181 757 216 60 0 chr1 196849409 196849576 -45814777 + MER63A DNA MER1_type 1 177 -33 366 361 28 7 chr1 196850017 196850231 -45814122 + MIR SINE MIR 16 233 -29 470 330 84 0 chr1 196850299 196850490 -45813863 - L3 LINE CR1 -1 1576 1370 210 336 42 98 chr1 196851716 196852002 -45812351 + L2 LINE L2 2994 3263 -9 421 190 22 22 chr1 196852707 196852844 -45811509 + GA-rich Low_complexity Low_complexity 4 140 0 1013 192 0 0 chr1 196853300 196853467 -45810886 - FAM SINE Alu -8 167 1 255 294 113 29 chr1 196853467 196853737 -45810616 - L1M4 LINE L1 -837 5309 5017 29 47 0 0 chr1 196853794 196853837 -45810516 + AT_rich Low_complexity Low_complexity 1 43 0 243 248 34 26 chr1 196853891 196854008 -45810345 - L1MC/D LINE L1 -1923 5885 5768 1202 170 81 33 chr1 196854010 196854281 -45810072 + AluJo SINE Alu 7 290 -22 2947 183 7 27 chr1 196854284 196854884 -45809469 + L1 LINE L1 4701 5288 -858 310 153 136 0 chr1 196854909 196854968 -45809385 + MER63B DNA MER1_type 368 434 0 260 219 106 93 chr1 196855692 196855724 -45808629 - MIR3 SINE MIR -25 183 153 348 244 141 68 chr1 196855724 196855958 -45808395 + MER112 DNA MER1_type 3 253 -3 260 219 106 93 chr1 196855958 196856076 -45808277 - MIR3 SINE MIR -55 153 31 875 141 7 0 chr1 196856453 196856588 -45807765 + FLAM_C SINE Alu 1 136 -7 789 207 27 16 chr1 196856720 196856908 -45807445 - L1M4 LINE L1 -2338 3808 3619 * 1179 226 86 69 chr1 196856896 196856970 -45807383 - HAL1 LINE L1 -862 1645 1574 755 252 14 28 chr1 196856970 196857184 -45807169 - MER58C DNA MER1_type -4 211 1 1179 226 86 69 chr1 196857184 196857833 -45806520 - HAL1 LINE L1 -933 1574 910 1110 234 0 9 chr1 196857883 196858109 -45806244 - L1MDa LINE L1 -6314 226 3 204 324 0 5 chr1 196858269 196858345 -45806008 - MIR SINE MIR -101 107 32 * 317 255 51 31 chr1 196858323 196858421 -45805932 + MER5A DNA MER1_type 7 106 -83 1929 180 59 7 chr1 196859536 196859980 -45804373 - MLT2B2 LTR ERVL -3 512 1 336 219 95 29 chr1 196860491 196860628 -45803725 - MER104 DNA Tc2 0 180 35 1506 103 36 13 chr1 196861396 196861620 -45802733 + MER30 DNA MER1_type 1 229 -1 1902 143 3 3 chr1 196861669 196861963 -45802390 - AluJb SINE Alu -18 294 1 1707 145 0 67 chr1 196862078 196862409 -45801944 + AluJo SINE Alu 1 309 -3 321 176 96 64 chr1 196862571 196862696 -45801657 + MER20B DNA MER1_type 1 129 -654 1084 285 81 20 chr1 196863343 196863750 -45800603 - MLT1J2 LTR MaLR -7 443 12 2844 148 106 4 chr1 196863855 196864394 -45799959 + L1MB5 LINE L1 5581 6174 0 411 312 32 16 chr1 196865044 196865169 -45799184 + L2 LINE L2 3187 3313 0 364 306 35 14 chr1 196866663 196866807 -45797546 + LTR67 LTR ERVL 411 557 0 592 294 64 68 chr1 196867016 196867502 -45796851 + LTR16C LTR ERVL 3 486 -5 632 183 56 40 chr1 196867698 196867729 -45796624 - FLAM_A SINE Alu -182 129 100 6148 106 181 20 chr1 196867729 196868504 -45795849 + MER52C LTR ERV1 1 1007 -271 261 57 0 0 chr1 196868504 196868539 -45795814 + (GGATG)n Simple_repeat Simple_repeat 4 38 0 6148 106 181 20 chr1 196868539 196868864 -45795489 + MER52C LTR ERV1 1007 1278 0 632 183 56 40 chr1 196868864 196868958 -45795395 - FLAM_A SINE Alu -211 100 2 297 311 69 35 chr1 196869450 196869739 -45794614 + HERVL LTR ERVL 962 1260 -4394 1027 151 6 0 chr1 196869892 196870064 -45794289 - AluSg/x SINE Alu -6 306 134 2027 115 0 42 chr1 196870064 196870377 -45793976 - AluSx SINE Alu -12 300 1 1182 326 49 16 chr1 196871140 196871695 -45792658 + HERVL LTR ERVL 1714 2286 -3478 1518 312 65 3 chr1 196871805 196872401 -45791952 + HERVL LTR ERVL 3047 3679 -1975 556 243 46 23 chr1 196872467 196872640 -45791713 + HERVL LTR ERVL 3768 3944 -1710 425 286 176 43 chr1 196872662 196873032 -45791321 + L2 LINE L2 2644 3066 -206 544 238 219 12 chr1 196873033 196873193 -45791160 + MIR SINE MIR 9 201 -61 25 83 0 0 chr1 196873193 196873253 -45791100 + AT_rich Low_complexity Low_complexity 1 60 0 1908 122 28 0 chr1 196873257 196873543 -45790810 + AluSx SINE Alu 1 294 -18 329 227 0 93 chr1 196873543 196873640 -45790713 - L1MC4 LINE L1 -1340 6702 6615 40 37 0 0 chr1 196873671 196873725 -45790628 + AT_rich Low_complexity Low_complexity 1 54 0 320 275 12 12 chr1 196873867 196873947 -45790406 + L2 LINE L2 3193 3272 0 299 257 99 20 chr1 196873951 196874052 -45790301 + MIR SINE MIR 32 140 -122 401 203 0 0 chr1 196874078 196874152 -45790201 - MER116 DNA Mariner -6 74 1 1345 131 32 140 chr1 196875035 196875378 -45788975 + AluYb8 SINE Alu 1 306 -12 380 204 117 19 chr1 196875409 196875512 -45788841 - MIR3 SINE MIR -3 205 93 353 266 32 0 chr1 196875608 196875702 -45788651 + MIR SINE MIR 45 141 -67 225 353 83 15 chr1 196875955 196876088 -45788265 - L2 LINE L2 -8 3264 3123 229 250 0 0 chr1 196876138 196876194 -45788159 - L2 LINE L2 -299 2973 2918 654 251 0 31 chr1 196876207 196876370 -45787983 - MLT1J LTR MaLR 0 511 354 793 239 91 5 chr1 196876388 196876585 -45787768 + MIR SINE MIR 21 234 -28 745 222 116 91 chr1 196876606 196876948 -45787405 - MLT1J LTR MaLR -167 448 1 210 211 51 128 chr1 196877054 196877210 -45787143 - L2 LINE L2 -1024 2290 2147 2218 209 52 41 chr1 196878014 196878570 -45785783 - MLT1F1 LTR MaLR 0 567 6 632 263 71 33 chr1 196879042 196879282 -45785071 - MIR SINE MIR -6 256 8 1400 101 0 0 chr1 196880461 196880659 -45783694 - L1MA2 LINE L1 0 6304 6107 1197 33 0 20 chr1 196880859 196881009 -45783344 - L1PA5 LINE L1 0 6154 6008 510 370 17 17 chr1 196881574 196881804 -45782549 + L2 LINE L2 1146 1375 -1939 399 233 147 23 chr1 196881873 196882002 -45782351 + L2 LINE L2 3167 3311 -2 187 185 99 111 chr1 196882231 196882312 -45782041 + L2 LINE L2 3173 3252 -20 209 303 64 9 chr1 196882335 196882444 -45781909 + L2 LINE L2 2443 2557 -757 743 201 67 62 chr1 196882446 196882583 -45781770 - MER58A DNA MER1_type -2240 180 39 1386 196 0 51 chr1 196882583 196882721 -45781632 + AluJb SINE Alu 1 144 -173 255 79 0 0 chr1 196882721 196882759 -45781594 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1386 196 0 51 chr1 196882759 196882952 -45781401 + AluJb SINE Alu 144 317 0 743 201 67 62 chr1 196882952 196882992 -45781361 - MER58A DNA MER1_type -2381 39 1 552 264 28 71 chr1 196883254 196883466 -45780887 + MIR SINE MIR 60 262 0 788 249 160 0 chr1 196883507 196883732 -45780621 + MIR SINE MIR 1 261 -1 1825 162 0 3 chr1 196884358 196884392 -45779961 - AluJb SINE Alu 0 540 507 1190 60 0 27 chr1 196884392 196884577 -45779776 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1825 162 0 3 chr1 196884577 196884899 -45779454 - AluJb SINE Alu -33 507 1 2196 136 147 8 chr1 196886150 196886524 -45777829 - MSTA LTR MaLR -2 426 1 434 270 68 92 chr1 196886570 196887125 -45777228 + L1MEd LINE L1 496 1037 -5082 192 294 0 0 chr1 196887296 196887347 -45777006 - L2 LINE L2 0 3313 3263 335 283 127 52 chr1 196887360 196887533 -45776820 - MER5A DNA MER1_type -3 186 1 861 195 75 0 chr1 196888044 196888244 -45776109 - MER66B LTR ERV1 0 486 272 206 184 41 41 chr1 196888492 196888541 -45775812 - MIR SINE MIR -116 146 98 245 243 156 41 chr1 196888822 196888945 -45775408 - MIR SINE MIR -75 133 20 4178 314 52 16 chr1 196890319 196890463 -45773890 - ERVL LTR ERVL -690 5074 4937 2323 116 101 25 chr1 196890463 196890861 -45773492 + MSTA LTR MaLR 1 428 0 4178 314 52 16 chr1 196890861 196892359 -45771994 - ERVL LTR ERVL -827 4937 3373 3822 314 84 43 chr1 196892385 196893174 -45771179 - ERVL LTR ERVL -2542 3222 2467 1847 132 21 0 chr1 196893174 196893463 -45770890 - AluSx SINE Alu -17 295 1 3822 314 84 43 chr1 196893463 196894150 -45770203 - ERVL LTR ERVL -3297 2467 1809 1364 145 41 99 chr1 196894150 196894313 -45770040 + MER33 DNA MER1_type 1 135 -2450 1544 154 10 48 chr1 196894313 196894450 -45769903 + AluJb SINE Alu 1 123 -189 2017 136 10 0 chr1 196894450 196894751 -45769602 + AluSx SINE Alu 1 304 -8 1544 154 10 48 chr1 196894751 196894905 -45769448 + AluJb SINE Alu 123 281 -31 1364 145 41 99 chr1 196894905 196895085 -45769268 + MER33 DNA MER1_type 135 324 0 3822 314 84 43 chr1 196895085 196895906 -45768447 - ERVL LTR ERVL -3955 1809 830 234 0 0 0 chr1 196895990 196896016 -45768337 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 1868 143 0 0 chr1 196896016 196896296 -45768057 - AluSx SINE Alu -32 280 1 228 67 0 0 chr1 196896556 196896586 -45767767 + (TC)n Simple_repeat Simple_repeat 1 30 0 455 331 64 14 chr1 196896871 196897152 -45767201 - LTR33 LTR ERVL 0 521 227 548 289 52 23 chr1 196897342 196897515 -45766838 - MIR SINE MIR -52 210 33 556 159 0 0 chr1 196897970 196898110 -45766243 + FLAM_A SINE Alu 28 167 0 453 238 38 19 chr1 196898243 196898403 -45765950 + MLT1K LTR MaLR 379 541 -47 1674 180 47 67 chr1 196899404 196899810 -45764543 - L1ME1 LINE L1 -5 6161 5764 2984 125 23 31 chr1 196899813 196899844 -45764509 - L1MA5 LINE L1 -23 6277 6247 2294 86 0 0 chr1 196899844 196900146 -45764207 - AluY SINE Alu -9 302 1 2984 125 23 31 chr1 196900146 196900627 -45763726 - L1MA5 LINE L1 -53 6247 5769 8070 34 11 14 chr1 196900632 196902418 -45761935 - L1PA8 LINE L1 0 6172 4384 416 333 191 14 chr1 196903328 196903538 -45760815 + MIR SINE MIR 6 252 -10 191 392 29 0 chr1 196903552 196903654 -45760699 - L2 LINE L2 -236 3036 2932 212 98 24 24 chr1 196904061 196904102 -45760251 + (TCC)n Simple_repeat Simple_repeat 1 41 0 2005 115 6 29 chr1 196904766 196905080 -45759273 - AluSx SINE Alu -5 307 1 261 119 0 0 chr1 196905670 196905712 -45758641 + (TG)n Simple_repeat Simple_repeat 1 42 0 235 372 25 33 chr1 196906520 196906641 -45757712 - MIR3 SINE MIR -39 169 50 213 361 58 16 chr1 196906761 196906952 -45757401 - L2 LINE L2 -219 3053 2855 756 170 57 31 chr1 196907644 196907803 -45756550 + MER3 DNA MER1_type 2 164 -45 4092 173 29 75 chr1 196908054 196909154 -45755199 + L1MB4 LINE L1 4995 6035 -145 2100 117 7 0 chr1 196909159 196909578 -45754775 - AluSx SINE Alu 0 421 1 705 175 18 60 chr1 196909578 196909744 -45754609 + L1MB4 LINE L1 6021 6179 -1 1253 238 26 29 chr1 196910665 196911010 -45753343 - MARNA DNA Mariner -17 569 226 595 167 9 18 chr1 196911111 196911225 -45753128 + Alu SINE Alu 181 293 -18 3095 147 23 58 chr1 196911233 196911333 -45753020 + L1MB5 LINE L1 5577 5679 -495 1964 158 0 0 chr1 196911333 196911643 -45752710 + AluJb SINE Alu 1 310 -2 3095 147 23 58 chr1 196911643 196912149 -45752204 + L1MB5 LINE L1 5679 6162 -12 237 224 61 0 chr1 196913218 196913267 -45751086 - L2 LINE L2 -87 3185 3134 1857 102 0 0 chr1 196913488 196913742 -45750611 + AluSx SINE Alu 46 299 -13 1895 147 6 44 chr1 196914378 196914499 -45749854 + MLT1B LTR MaLR 63 187 -203 2185 125 0 0 chr1 196914499 196914811 -45749542 + AluSq SINE Alu 1 312 -1 1895 147 6 44 chr1 196914811 196915030 -45749323 + MLT1B LTR MaLR 187 390 0 3605 179 16 14 chr1 196915511 196916209 -45748144 + L1MB5 LINE L1 5468 6166 -8 339 44 0 0 chr1 196916291 196916336 -45748017 + (CA)n Simple_repeat Simple_repeat 1 45 0 181 297 63 63 chr1 196916483 196916594 -45747759 + L2 LINE L2 3087 3197 -75 385 233 34 19 chr1 196916608 196916726 -45747627 + MIR SINE MIR 20 152 -62 202 293 80 0 chr1 196917451 196917526 -45746827 - L2 LINE L2 -3 3310 3230 450 0 0 0 chr1 196917586 196917636 -45746717 + (CA)n Simple_repeat Simple_repeat 2 51 0 518 253 169 7 chr1 196918280 196918434 -45745919 - MER5A DNA MER1_type -1 188 10 570 307 0 11 chr1 196918454 196918630 -45745723 + MER5B DNA MER1_type 5 178 0 187 300 0 0 chr1 196918969 196919019 -45745334 + L2 LINE L2 3262 3311 -2 319 296 45 0 chr1 196919077 196919165 -45745188 + MIR SINE MIR 85 176 -86 390 266 143 5 chr1 196919355 196919549 -45744804 - MIR SINE MIR -13 249 28 941 190 68 0 chr1 196921498 196921703 -45742650 - L1MD2 LINE L1 -2 6357 6139 527 78 13 0 chr1 196921778 196921855 -45742498 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 322 627 6 0 chr1 196921824 196922001 -45742352 + polypyrimidine Low_complexity Low_complexity 1 178 0 * 1782 116 12 95 chr1 196922009 196922346 -45742007 - AluSp SINE Alu -4 309 1 654 259 78 25 chr1 196922408 196922651 -45741702 + MIR SINE MIR 6 261 -1 226 372 26 9 chr1 196922734 196922847 -45741506 - L2 LINE L2 -15 3298 3184 493 139 0 0 chr1 196922908 196922980 -45741373 + AluJ/FLAM SINE Alu 2 73 -239 4151 104 26 2 chr1 196922981 196923547 -45740806 - LTR19B LTR ERV1 0 580 1 1591 109 4 32 chr1 196923547 196923795 -45740558 + AluSg/x SINE Alu 70 310 -2 1361 191 14 14 chr1 196923929 196924211 -45740142 + AluJo SINE Alu 1 282 -30 729 173 0 50 chr1 196924384 196924523 -45739830 + FLAM_C SINE Alu 1 132 -1 229 174 65 0 chr1 196924702 196924748 -45739605 - MIR SINE MIR -108 154 106 329 62 21 0 chr1 196925247 196925295 -45739058 + (TG)n Simple_repeat Simple_repeat 2 50 0 302 253 110 68 chr1 196925542 196925688 -45738665 - MIR SINE MIR 0 262 111 1635 181 17 0 chr1 196926545 196926833 -45737520 - AluJo SINE Alu -17 295 3 221 209 0 0 chr1 196927543 196927586 -45736767 + MIR SINE MIR 189 231 -31 367 224 103 51 chr1 196927654 196927700 -45736653 - MIR3 SINE MIR -13 195 153 1006 188 0 0 chr1 196927700 196927886 -45736467 - MER5A DNA MER1_type -2 187 2 367 224 103 51 chr1 196927886 196927995 -45736358 - MIR3 SINE MIR -55 153 32 445 242 112 56 chr1 196928370 196928548 -45735805 + MIR3 SINE MIR 14 201 -7 1959 154 131 13 chr1 196928763 196929146 -45735207 + MSTA LTR MaLR 1 428 0 2076 142 0 0 chr1 196929631 196929942 -45734411 - AluSx SINE Alu -1 311 1 189 0 0 0 chr1 196931128 196931149 -45733204 + (TC)n Simple_repeat Simple_repeat 2 22 0 351 0 60 48 chr1 196931151 196931234 -45733119 + (CA)n Simple_repeat Simple_repeat 2 85 0 360 0 0 0 chr1 196931760 196931800 -45732553 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr1 196933090 196933112 -45731241 + GC_rich Low_complexity Low_complexity 1 22 0 254 284 118 24 chr1 196933403 196933530 -45730823 + L2 LINE L2 3168 3306 -7 316 267 48 19 chr1 196933661 196933766 -45730587 + MIR3 SINE MIR 82 189 -19 308 287 35 0 chr1 196933844 196933931 -45730422 - L3 LINE CR1 -4 1573 1484 382 224 0 0 chr1 196934191 196934267 -45730086 + MIR SINE MIR 73 148 -114 183 338 175 0 chr1 196934374 196934454 -45729899 - MIR SINE MIR -83 125 32 465 291 41 15 chr1 196934993 196935189 -45729164 + L1MC/D LINE L1 5506 5706 -2102 440 264 49 7 chr1 196935477 196935621 -45728732 - MIR SINE MIR -48 214 65 2281 230 64 23 chr1 196935637 196936188 -45728165 + MER77 LTR ERV1 58 673 -4 1255 234 125 46 chr1 196936355 196936898 -45727455 + LTR1B LTR ERV1 30 615 -211 290 265 37 122 chr1 196936908 196937097 -45727256 + LTR28 LTR ERV1 848 1020 0 2427 105 103 5 chr1 196938162 196938552 -45725801 - MSTA LTR MaLR 0 428 1 1010 186 0 11 chr1 196938922 196939099 -45725254 + FAM SINE Alu 1 175 0 216 0 0 0 chr1 196939214 196939238 -45725115 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 205 345 109 17 chr1 196939318 196939437 -45724916 + L2 LINE L2 3138 3267 -5 997 180 77 10 chr1 196939474 196939668 -45724685 - MER3 DNA MER1_type -2 207 1 258 257 29 14 chr1 196939668 196939738 -45724615 - MER91B DNA MER1_type -119 71 1 1963 209 48 2 chr1 196941574 196941991 -45722362 + MER63B DNA MER1_type 1 436 0 364 258 101 51 chr1 196942121 196942338 -45722015 + LTR16A1 LTR ERVL 6 233 -224 582 157 0 10 chr1 196942527 196942629 -45721724 - L1MC5 LINE L1 -54 7907 7807 200 328 126 49 chr1 196943208 196943391 -45720962 - MIR SINE MIR -3 259 63 2206 77 11 0 chr1 196944289 196944576 -45719777 - AluY SINE Alu -5 306 17 302 87 0 0 chr1 196945328 196945374 -45718979 - MADE1 DNA Mariner -34 46 1 1795 109 4 8 chr1 196945854 196946119 -45718234 + MER31A LTR ERV1 222 485 0 852 244 176 16 chr1 196946167 196946629 -45717724 + L2 LINE L2 2772 3312 -1 279 239 65 11 chr1 196947757 196947849 -45716504 - MIR SINE MIR -95 113 17 431 280 106 34 chr1 196948452 196948659 -45715694 + MIR SINE MIR 17 238 -24 180 0 0 0 chr1 196948678 196948698 -45715655 + (CACCAT)n Simple_repeat Simple_repeat 4 23 0 535 179 0 0 chr1 196948892 196948976 -45715377 + AluJ/FLAM SINE Alu 5 88 -224 260 111 244 0 chr1 196948976 196949021 -45715332 + FLAM SINE Alu 56 111 -22 23 33 0 0 chr1 196949025 196949055 -45715298 + AT_rich Low_complexity Low_complexity 1 30 0 299 254 25 34 chr1 196949582 196949700 -45714653 + AluJb SINE Alu 162 278 -24 1827 107 27 0 chr1 196949774 196950035 -45714318 - Tigger1 DNA MER2_type -1153 1265 998 242 211 0 0 chr1 196950030 196950082 -45714271 - Tigger1 DNA MER2_type -2366 52 1 * 2211 134 48 106 chr1 196950084 196950282 -45714071 + Tigger2a DNA MER2_type 1 209 -2499 1891 138 0 31 chr1 196950282 196950600 -45713753 - AluSq SINE Alu -5 308 1 2211 134 48 106 chr1 196950600 196950862 -45713491 + Tigger2a DNA MER2_type 209 434 0 211 283 17 0 chr1 196951797 196951857 -45712496 - MIR SINE MIR -64 144 84 1725 222 32 44 chr1 196952360 196952851 -45711502 - MER77 LTR ERV1 -6 599 54 1175 192 8 35 chr1 196953753 196954014 -45710339 - MER46C DNA MER2_type 0 338 85 270 396 40 0 chr1 196954141 196954242 -45710111 + L2 LINE L2 3168 3272 0 250 344 94 26 chr1 196954503 196954695 -45709658 + MIR3 SINE MIR 4 208 0 * 316 246 209 6 chr1 196954628 196954744 -45709609 - MER5A DNA MER1_type -1 188 37 1673 145 16 42 chr1 196954744 196955055 -45709298 + AluJo SINE Alu 1 303 -9 316 246 209 6 chr1 196955055 196955070 -45709283 - MER5A DNA MER1_type -152 37 26 2191 84 3 7 chr1 196955191 196955489 -45708864 + AluSc SINE Alu 1 297 -12 1000 138 26 0 chr1 196955503 196955655 -45708698 + MER30 DNA MER1_type 75 230 0 1295 75 84 37 chr1 196955655 196955869 -45708484 - L1P4 LINE L1 -630 5533 5310 535 192 93 17 chr1 196955862 196956034 -45708319 + L1MC/D LINE L1 2299 2483 -3901 * 287 72 0 0 chr1 196956039 196956088 -45708265 - L1PA13 LINE L1 0 6163 6120 1044 178 19 0 chr1 196956166 196956374 -45707979 - L1P LINE L1 -863 5283 5072 2334 183 38 10 chr1 196956390 196956893 -45707460 + L1MC/D LINE L1 2474 2990 -3392 936 157 0 7 chr1 196956890 196957043 -45707310 + L1MC/D LINE L1 5864 6015 -580 * 216 204 0 0 chr1 196957045 196957089 -45707264 + (TTA)n Simple_repeat Simple_repeat 2 45 0 186 183 0 83 chr1 196957280 196957340 -45707013 - MER5B DNA MER1_type -99 79 25 189 118 0 29 chr1 196957303 196957337 -45707016 + MER5A DNA MER1_type 131 163 -26 333 221 174 84 chr1 196957460 196957673 -45706680 - L1ME LINE L1 -296 5825 5594 184 303 13 53 chr1 196958454 196958530 -45705823 + MIR SINE MIR 11 83 -179 221 305 24 0 chr1 196961006 196961088 -45703265 - L3 LINE CR1 -89 1488 1405 195 42 0 0 chr1 196961088 196961112 -45703241 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1922 131 0 3 chr1 196961114 196961396 -45702957 - AluSx SINE Alu -31 281 1 261 246 0 18 chr1 196961430 196961487 -45702866 + MIR3 SINE MIR 152 207 -1 232 321 165 0 chr1 196961481 196961590 -45702763 - L3 LINE CR1 -187 1390 1264 * 180 369 62 0 chr1 196961673 196961738 -45702615 - MIR3 SINE MIR -2 206 138 2112 121 0 3 chr1 196963435 196963740 -45700613 - AluSx SINE Alu -8 304 1 232 187 93 86 chr1 196964000 196964139 -45700214 - LTR16A1 LTR ERVL -2 455 316 646 208 85 64 chr1 196965182 196965411 -45698942 - MLT1H1 LTR MaLR -15 540 307 1155 150 101 62 chr1 196965411 196965718 -45698635 + MER33 DNA MER1_type 1 319 -5 182 282 115 13 chr1 196966357 196966435 -45697918 + L2 LINE L2 3186 3271 -1 948 281 109 19 chr1 196966677 196967097 -45697256 - MLT1L LTR MaLR -40 575 118 229 156 0 67 chr1 196967201 196967246 -45697107 - MIR SINE MIR -9 253 212 309 26 0 0 chr1 196969057 196969095 -45695258 + (CAA)n Simple_repeat Simple_repeat 2 39 0 514 225 145 13 chr1 196969095 196969260 -45695093 + MIR SINE MIR 42 225 -37 420 203 237 11 chr1 196970069 196970246 -45694107 - MIR SINE MIR -43 219 3 231 217 0 0 chr1 196971040 196971086 -45693267 - L3b LINE CR1 -188 1395 1350 389 311 122 0 chr1 196971175 196971361 -45692992 + MIR SINE MIR 42 248 -14 628 309 46 8 chr1 196973843 196974102 -45690251 - L3 LINE CR1 -224 1353 1085 640 276 30 26 chr1 196974102 196974370 -45689983 + L1ME4a LINE L1 5522 5790 -331 599 206 81 117 chr1 196974381 196974604 -45689749 + MIR SINE MIR 2 216 -46 25 65 0 0 chr1 196974646 196974692 -45689661 + AT_rich Low_complexity Low_complexity 1 46 0 322 264 25 33 chr1 196974734 196974855 -45689498 + L1ME4a LINE L1 5999 6118 -3 234 224 52 0 chr1 196974946 196975004 -45689349 - L3 LINE CR1 -604 973 913 411 264 201 0 chr1 196976464 196976608 -45687745 + MIR SINE MIR 31 203 -59 1562 171 28 0 chr1 196976666 196976952 -45687401 + AluSx SINE Alu 1 294 -18 331 315 0 11 chr1 196976965 196977057 -45687296 - L1MC4 LINE L1 -1339 6703 6613 40 37 0 0 chr1 196977080 196977134 -45687219 + AT_rich Low_complexity Low_complexity 1 54 0 320 275 12 12 chr1 196977276 196977356 -45686997 + L2 LINE L2 3193 3272 0 299 257 99 20 chr1 196977360 196977461 -45686892 + MIR SINE MIR 32 140 -122 401 203 0 0 chr1 196977487 196977561 -45686792 - MER116 DNA Mariner -6 74 1 226 250 73 21 chr1 196978556 196978652 -45685701 - L1ME1 LINE L1 -90 6076 5976 25 0 0 0 chr1 196980059 196980084 -45684269 + AT_rich Low_complexity Low_complexity 1 25 0 244 301 55 0 chr1 196980160 196980233 -45684120 - L2 LINE L2 -5 3308 3232 479 250 99 35 chr1 196980297 196980469 -45683884 + MER5A DNA MER1_type 7 189 0 308 266 14 79 chr1 196980500 196980639 -45683714 - L2 LINE L2 -211 3061 2932 304 208 145 110 chr1 196980741 196980877 -45683476 - MIR SINE MIR -30 178 31 1795 153 0 44 chr1 196980881 196981055 -45683298 - AluJb SINE Alu -5 307 152 1994 111 3 24 chr1 196981055 196981352 -45683001 - AluSx SINE Alu -21 291 1 1795 153 0 44 chr1 196981352 196981498 -45682855 - AluJb SINE Alu -160 152 1 199 271 0 0 chr1 196982294 196982342 -45682011 - L2 LINE L2 -86 3186 3139 323 309 65 120 chr1 196983102 196983377 -45680976 + MIR SINE MIR 3 262 0 1138 272 10 16 chr1 196983768 196984080 -45680273 - L2 LINE L2 0 3313 3004 3035 248 162 17 chr1 196984093 196984158 -45680195 - L2 LINE L2 -705 2609 2555 710 181 0 38 chr1 196984158 196984291 -45680062 - FLAM_C SINE Alu -5 128 1 3035 248 162 17 chr1 196984291 196985321 -45679032 - L2 LINE L2 -759 2555 1355 1497 153 63 4 chr1 196985349 196985604 -45678749 + AluJo SINE Alu 24 293 -19 979 224 57 41 chr1 196985643 196986031 -45678322 + L1MC5 LINE L1 7500 7893 -68 773 274 52 33 chr1 196986060 196986330 -45678023 - L2 LINE L2 -1946 1368 1094 486 260 63 16 chr1 196987270 196987397 -45676956 + MIR SINE MIR 2 134 -128 1623 182 7 3 chr1 196987417 196987714 -45676639 - AluJb SINE Alu -14 298 1 184 319 43 0 chr1 196987717 196987786 -45676567 + MIR SINE MIR 117 188 -74 186 245 28 196 chr1 196987887 196988030 -45676323 + MIR3 SINE MIR 82 200 -8 25 0 0 0 chr1 196988218 196988243 -45676110 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 196988386 196988409 -45675944 + AT_rich Low_complexity Low_complexity 1 23 0 902 199 11 0 chr1 196988409 196988585 -45675768 - AluJo SINE Alu -23 289 112 1395 159 95 18 chr1 196988590 196988873 -45675480 - L1M3 LINE L1 -603 5580 5276 907 259 140 20 chr1 196988943 196989394 -45674959 - L1ME LINE L1 -344 5818 5314 29 0 0 0 chr1 196989406 196989435 -45674918 + AT_rich Low_complexity Low_complexity 1 29 0 473 251 0 9 chr1 196989504 196989622 -45674731 - L1ME1 LINE L1 -5 6161 6058 264 119 0 0 chr1 196989622 196989664 -45674689 - MER3 DNA MER1_type -160 49 8 2881 277 81 40 chr1 196989664 196990001 -45674352 - L1ME1 LINE L1 -150 6016 5694 2190 45 0 4 chr1 196990001 196990270 -45674083 - AluY SINE Alu -17 294 27 2881 277 81 40 chr1 196990270 196991609 -45672744 - L1ME1 LINE L1 -472 5694 4265 773 168 0 81 chr1 196991610 196991783 -45672570 - FRAM SINE Alu -18 158 1 774 168 0 8 chr1 196991843 196991968 -45672385 - AluJo SINE Alu -187 125 2 3898 232 27 75 chr1 196991969 196992556 -45671797 - L1ME1 LINE L1 -1866 4280 3666 658 206 0 8 chr1 196992556 196992682 -45671671 - FLAM_A SINE Alu -7 126 2 3898 232 27 75 chr1 196992682 196993572 -45670781 - L1ME1 LINE L1 -2480 3666 2874 1388 180 7 30 chr1 196993580 196993875 -45670478 + AluJo SINE Alu 1 288 -24 25 0 0 0 chr1 196993875 196993900 -45670453 + AT_rich Low_complexity Low_complexity 1 25 0 1551 184 0 32 chr1 196993916 196994199 -45670154 + AluJb SINE Alu 14 287 -25 24 32 0 0 chr1 196994199 196994230 -45670123 + AT_rich Low_complexity Low_complexity 1 31 0 2418 77 0 0 chr1 197044401 197044700 -45619653 - AluY SINE Alu -12 299 1 566 269 98 12 chr1 197044706 197044962 -45619391 + L1MC4 LINE L1 7764 8041 -1 214 370 76 17 chr1 197044973 197045092 -45619261 + MER5A DNA MER1_type 64 189 0 2078 138 7 3 chr1 197047185 197047488 -45616865 - AluJb SINE Alu -7 305 7 229 349 32 16 chr1 197047781 197047907 -45616446 + MIR SINE MIR 94 221 -41 2549 79 0 0 chr1 197048824 197049127 -45615226 - AluSx SINE Alu -9 303 1 2135 121 3 3 chr1 197049789 197050087 -45614266 - AluSx SINE Alu -14 298 1 198 0 0 0 chr1 197050145 197050167 -45614186 + (A)n Simple_repeat Simple_repeat 1 22 0 2364 108 0 6 chr1 197052430 197052745 -45611608 - AluSq SINE Alu 0 313 1 256 242 15 0 chr1 197054131 197054197 -45610156 + L1ME LINE L1 5731 5797 -369 276 304 80 75 chr1 197057169 197057370 -45606983 + L2 LINE L2 2316 2517 -797 226 243 214 0 chr1 197057894 197057964 -45606389 - L2 LINE L2 -2 3270 3186 885 239 19 19 chr1 197058061 197058266 -45606087 + MER58A DNA MER1_type 1 205 -19 388 324 141 30 chr1 197058377 197058962 -45605391 - L2 LINE L2 -244 3028 2381 2356 113 0 0 chr1 197059355 197059656 -45604697 + AluSx SINE Alu 1 301 -11 518 285 104 70 chr1 197059891 197060421 -45603932 - MLT1K LTR MaLR -22 566 19 348 273 57 135 chr1 197060448 197060745 -45603608 - L2 LINE L2 -50 3222 2949 1539 208 80 0 chr1 197060764 197061100 -45603253 - MER89 LTR ERV1 0 559 197 276 232 37 0 chr1 197061073 197061155 -45603198 - MER89 LTR ERV1 -470 89 5 * 2371 101 3 3 chr1 197061696 197062002 -45602351 - AluSx SINE Alu -5 307 2 800 335 27 13 chr1 197062170 197062607 -45601746 + L2 LINE L2 2622 3060 -253 2865 168 75 25 chr1 197062672 197063281 -45601072 - L1MC1 LINE L1 -19 6314 5675 336 298 112 34 chr1 197063281 197063459 -45600894 + L2 LINE L2 3119 3310 -3 470 307 18 12 chr1 197063866 197064032 -45600321 - MIR SINE MIR -6 256 90 223 222 0 0 chr1 197064351 197064396 -45599957 - MER5A DNA MER1_type -107 82 38 471 35 0 0 chr1 197064539 197064596 -45599757 + (TG)n Simple_repeat Simple_repeat 2 58 0 406 279 129 39 chr1 197064928 197065161 -45599192 - L3 LINE CR1 -170 1407 1154 2241 117 0 0 chr1 197065757 197066048 -45598305 + AluSx SINE Alu 1 291 -21 2235 186 52 31 chr1 197066050 197066604 -45597749 - L1MB5 LINE L1 -34 6140 5575 678 276 6 29 chr1 197066666 197066836 -45597517 + MIR3 SINE MIR 14 179 -29 227 195 0 0 chr1 197067566 197067607 -45596746 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 325 316 61 26 chr1 197067628 197067742 -45596611 - L2 LINE L2 -24 3289 3172 593 313 59 70 chr1 197067865 197068161 -45596192 - L2 LINE L2 -343 2971 2680 397 73 0 0 chr1 197068161 197068216 -45596137 + L1MA5 LINE L1 6244 6298 -2 593 313 59 70 chr1 197068216 197068363 -45595990 - L2 LINE L2 -634 2680 2533 1104 205 23 5 chr1 197069470 197069685 -45594668 + MER20 DNA MER1_type 1 219 0 198 373 9 18 chr1 197071836 197071946 -45592407 - MIR SINE MIR -31 231 123 231 36 0 0 chr1 197073195 197073223 -45591130 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 210 268 0 0 chr1 197073438 197073561 -45590792 + (CA)n Simple_repeat Simple_repeat 1 123 0 289 296 65 9 chr1 197074187 197074295 -45590058 + MIR SINE MIR 30 143 -65 556 197 218 0 chr1 197075208 197075350 -45589003 + MER5A DNA MER1_type 11 183 -6 232 333 71 10 chr1 197076604 197076703 -45587650 - L2 LINE L2 -1 3312 3208 2117 116 10 42 chr1 197076727 197077037 -45587316 - AluSx SINE Alu -12 300 1 2410 77 0 3 chr1 197077044 197077342 -45587011 - AluY SINE Alu -14 297 1 197 240 0 20 chr1 197077782 197077832 -45586521 - L2 LINE L2 0 3313 3265 218 323 194 0 chr1 197077850 197077943 -45586410 - MIR SINE MIR -66 142 32 260 335 129 36 chr1 197078086 197078280 -45586073 - MIR SINE MIR -6 256 45 192 40 0 0 chr1 197078854 197078879 -45585474 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2388 57 3 3 chr1 197078886 197079169 -45585184 - AluY SINE Alu -28 283 1 266 302 129 9 chr1 197079514 197079630 -45584723 + MER5B DNA MER1_type 49 178 0 926 241 8 55 chr1 197080656 197080893 -45583460 + MIR SINE MIR 16 241 -21 278 246 14 0 chr1 197081283 197081352 -45583001 + CT-rich Low_complexity Low_complexity 1 70 0 * 294 263 32 0 chr1 197081329 197081424 -45582929 + (TCCA)n Simple_repeat Simple_repeat 2 99 0 591 295 144 25 chr1 197081616 197082282 -45582071 + L2 LINE L2 2468 3253 -19 308 260 94 10 chr1 197082737 197082833 -45581520 - L2 LINE L2 -1 3271 3168 308 289 179 17 chr1 197082954 197083127 -45581226 + MIR SINE MIR 14 214 -48 315 233 209 23 chr1 197083637 197083766 -45580587 + MER5A DNA MER1_type 37 189 0 232 195 18 44 chr1 197084635 197084748 -45579605 + CT-rich Low_complexity Low_complexity 3 112 0 276 226 0 48 chr1 197088990 197089052 -45575301 - MIR3 SINE MIR -21 187 129 654 344 37 0 chr1 197089648 197089889 -45574464 + MIR SINE MIR 13 262 0 348 215 48 139 chr1 197089974 197090183 -45574170 + L3b LINE CR1 1218 1407 -176 549 249 66 39 chr1 197091451 197091632 -45572721 + MIR SINE MIR 76 261 -1 182 359 0 0 chr1 197092322 197092375 -45571978 - L2 LINE L2 0 3313 3261 2369 114 0 0 chr1 197095369 197095675 -45568678 + AluSc SINE Alu 1 306 -3 477 272 58 29 chr1 197095796 197095969 -45568384 - MER5B DNA MER1_type 0 178 1 211 256 64 26 chr1 197096736 197096814 -45567539 + L3b LINE CR1 1303 1383 -200 214 342 26 0 chr1 197097217 197097293 -45567060 - MIR SINE MIR -68 140 63 302 271 175 0 chr1 197097992 197098114 -45566239 - MIR SINE MIR -59 149 21 480 299 109 20 chr1 197098384 197098585 -45565768 - MIR SINE MIR -30 232 14 206 270 61 92 chr1 197098582 197098745 -45565608 - MIR SINE MIR -83 179 22 * 307 283 11 22 chr1 197099166 197099258 -45565095 - MIR3 SINE MIR -13 195 105 513 315 38 5 chr1 197099959 197100143 -45564210 - MIR3 SINE MIR -8 200 11 352 268 24 16 chr1 197101206 197101333 -45563020 + CT-rich Low_complexity Low_complexity 4 131 0 451 277 101 13 chr1 197101417 197101576 -45562777 - MER5B DNA MER1_type -5 173 1 600 303 67 6 chr1 197105203 197105381 -45558972 + MIR SINE MIR 74 262 0 445 301 26 13 chr1 197107804 197107960 -45556393 - MIR3 SINE MIR -45 163 6 879 294 14 7 chr1 197109078 197109357 -45554996 - LTR33 LTR ERVL -240 281 1 352 344 13 0 chr1 197109883 197110021 -45554332 - L1MC3 LINE L1 -1127 6703 6536 246 316 48 6 chr1 197112274 197112442 -45551911 + CT-rich Low_complexity Low_complexity 5 179 0 204 222 37 0 chr1 197112936 197112990 -45551363 + C-rich Low_complexity Low_complexity 2 57 0 234 292 183 62 chr1 197115214 197115454 -45548899 - L2 LINE L2 -5 3267 2999 189 0 0 0 chr1 197115882 197115903 -45548450 + (CAGGC)n Simple_repeat Simple_repeat 2 22 0 258 105 0 0 chr1 197116139 197116177 -45548176 + (A)n Simple_repeat Simple_repeat 1 38 0 640 130 0 0 chr1 197120221 197120321 -45544032 - AluSg/x SINE Alu -1 308 209 1631 162 0 26 chr1 197120441 197120713 -45543640 + AluJb SINE Alu 35 299 -13 357 24 0 0 chr1 197120892 197120934 -45543419 + (TG)n Simple_repeat Simple_repeat 2 43 0 261 221 0 0 chr1 197122864 197122932 -45541421 + (CCA)n Simple_repeat Simple_repeat 3 70 0 1288 114 5 0 chr1 197126239 197126423 -45537930 + AluSq SINE Alu 126 310 -3 290 296 0 0 chr1 197126606 197126677 -45537676 + (TG)n Simple_repeat Simple_repeat 2 72 0 183 184 0 0 chr1 197126873 197126911 -45537442 + (CGG)n Simple_repeat Simple_repeat 2 39 0 222 303 0 45 chr1 197131791 197131857 -45532496 - L2 LINE L2 0 3272 3210 1327 183 0 13 chr1 197132744 197132974 -45531379 + AluJo SINE Alu 73 299 -13 271 117 0 33 chr1 197132974 197133034 -45531319 + (GGGGA)n Simple_repeat Simple_repeat 3 60 0 483 315 233 9 chr1 197133071 197133533 -45530820 - L2 LINE L2 -124 3189 2638 1654 189 14 3 chr1 197135870 197136161 -45528192 + AluJb SINE Alu 1 294 -18 2339 94 0 3 chr1 197136180 197136489 -45527864 + AluSx SINE Alu 1 308 -4 237 267 85 95 chr1 197137191 197137341 -45527012 + MIR SINE MIR 19 168 -62 1914 85 4 0 chr1 197137359 197137606 -45526747 + AluSq SINE Alu 1 248 -65 199 369 106 31 chr1 197137846 197138006 -45526347 - L2 LINE L2 -5 3267 3096 477 224 36 85 chr1 197138959 197139124 -45525229 - MIR3 SINE MIR -27 181 25 189 0 0 0 chr1 197141644 197141665 -45522688 + (CCCTG)n Simple_repeat Simple_repeat 5 25 0 212 210 17 185 chr1 197141671 197141790 -45522563 + MIR SINE MIR 88 187 -21 324 70 0 0 chr1 197145028 197145071 -45519282 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 251 295 0 0 chr1 197145108 197145169 -45519184 - L2 LINE L2 -60 3212 3152 505 322 19 53 chr1 197147031 197147239 -45517114 - MIR3 SINE MIR -5 203 3 232 236 91 0 chr1 197148800 197148855 -45515498 + L2 LINE L2 3254 3313 0 2185 104 0 43 chr1 197148926 197149252 -45515101 + AluSx SINE Alu 1 312 0 196 299 72 21 chr1 197149725 197149822 -45514531 + MIR SINE MIR 44 145 -63 1980 130 0 37 chr1 197149830 197149865 -45514488 - AluJb SINE Alu -1 311 276 294 29 0 0 chr1 197149865 197149900 -45514453 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1980 130 0 37 chr1 197149900 197150186 -45514167 - AluJb SINE Alu -36 276 2 348 346 98 20 chr1 197150291 197150545 -45513808 + L2 LINE L2 2630 2903 -411 662 211 0 18 chr1 197150940 197151111 -45513242 + (CA)n Simple_repeat Simple_repeat 1 168 0 1733 176 3 10 chr1 197151192 197151499 -45512854 - AluJo SINE Alu -7 305 1 180 254 169 0 chr1 197151554 197151625 -45512728 + L2 LINE L2 3190 3272 0 191 89 0 71 chr1 197152283 197152339 -45512014 + (CCCCCA)n Simple_repeat Simple_repeat 3 54 0 426 141 0 14 chr1 197152823 197152894 -45511459 + MER5A DNA MER1_type 2 71 -118 893 108 0 31 chr1 197152927 197153056 -45511297 + AluSq/x SINE Alu 1 125 -187 499 162 133 9 chr1 197153057 197153162 -45511191 + MER5A DNA MER1_type 68 185 -4 298 321 86 70 chr1 197153537 197153686 -45510667 - MIR SINE MIR -6 256 100 2268 85 0 0 chr1 197153686 197153979 -45510374 - AluSx SINE Alu -19 293 1 298 321 86 70 chr1 197153979 197154072 -45510281 - MIR SINE MIR -162 100 10 652 224 79 12 chr1 197154375 197154540 -45509813 + MIR SINE MIR 76 251 -11 221 291 68 68 chr1 197154779 197154896 -45509457 + L2 LINE L2 3191 3307 -6 212 237 186 0 chr1 197155854 197155913 -45508440 - MIR3 SINE MIR -7 201 132 2257 78 3 3 chr1 197157415 197157710 -45506643 - AluY SINE Alu -16 295 1 640 177 6 73 chr1 197158778 197158942 -45505411 - MER20 DNA MER1_type -31 188 36 1320 141 52 37 chr1 197159058 197159328 -45505025 - MER58B DNA MER1_type 0 341 68 760 234 40 23 chr1 197159533 197159708 -45504645 - MER45A DNA AcHobo 0 178 1 396 300 10 0 chr1 197159804 197159904 -45504449 + MER91A DNA MER1_type 32 132 -64 206 250 83 130 chr1 197160013 197160229 -45504124 - L2 LINE L2 -218 3054 2849 235 296 42 0 chr1 197160231 197160302 -45504051 + L2 LINE L2 3240 3313 0 1879 152 0 3 chr1 197160455 197160752 -45503601 + AluJb SINE Alu 5 300 -12 398 358 84 40 chr1 197160808 197161482 -45502871 - L2 LINE L2 -120 3152 2458 1548 184 26 15 chr1 197161517 197161859 -45502494 + MLT1A1 LTR MaLR 20 365 0 1652 166 33 12 chr1 197161933 197162270 -45502083 - MLT2C1 LTR ERVL -53 344 1 596 310 112 71 chr1 197162371 197163057 -45501296 + L2 LINE L2 2575 3272 0 201 267 0 0 chr1 197163113 197163158 -45501195 - L2 LINE L2 -18 3295 3251 394 283 0 8 chr1 197163166 197163286 -45501067 - LTR67 LTR ERVL 0 557 439 356 325 173 16 chr1 197163445 197163636 -45500717 - MIR SINE MIR -41 221 1 251 300 45 9 chr1 197164084 197164194 -45500159 + MIR SINE MIR 20 133 -75 340 265 53 68 chr1 197164758 197164890 -45499463 - L2 LINE L2 0 3272 3143 409 263 37 97 chr1 197164923 197165140 -45499213 - MIR SINE MIR -46 216 13 417 267 236 0 chr1 197165210 197165405 -45498948 - MIR SINE MIR -7 255 15 1175 160 5 11 chr1 197166190 197166378 -45497975 - AluJb SINE Alu -37 275 89 327 282 171 41 chr1 197166381 197166551 -45497802 + MIR SINE MIR 70 261 -1 322 331 115 0 chr1 197167791 197167939 -45496414 - MIR3 SINE MIR -14 194 30 198 71 0 0 chr1 197168807 197168835 -45495518 + (CCG)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr1 197168896 197168917 -45495436 + GC_rich Low_complexity Low_complexity 1 21 0 194 373 0 0 chr1 197171451 197171510 -45492843 + L3 LINE CR1 1498 1556 -21 367 291 10 82 chr1 197173420 197173616 -45490737 - MIR SINE MIR -80 182 1 288 192 96 41 chr1 197174342 197174415 -45489938 + L2 LINE L2 3234 3310 -3 456 19 0 0 chr1 197174485 197174538 -45489815 + (TG)n Simple_repeat Simple_repeat 2 54 0 459 35 0 0 chr1 197174859 197174916 -45489437 + (CA)n Simple_repeat Simple_repeat 2 58 0 324 239 45 0 chr1 197174951 197175018 -45489335 - L1MCa LINE L1 -4349 2077 2008 203 189 0 0 chr1 197175287 197175324 -45489029 - L2 LINE L2 -12 3301 3265 338 368 22 2 chr1 197175572 197175725 -45488628 - MIR SINE MIR -31 177 45 351 0 0 0 chr1 197175856 197175895 -45488458 + (TG)n Simple_repeat Simple_repeat 1 39 0 2457 125 3 32 chr1 197175970 197176204 -45488149 + MER47A DNA MER2_type 1 221 -2102 2234 99 0 0 chr1 197176204 197176496 -45487857 - AluSq SINE Alu -21 292 1 2457 125 3 32 chr1 197176496 197176638 -45487715 + MER47A DNA MER2_type 221 366 0 323 314 138 38 chr1 197176723 197177013 -45487340 - L2 LINE L2 -16 3256 2938 322 265 3 3 chr1 197179011 197179112 -45485241 - MIR SINE MIR -65 143 68 671 228 161 6 chr1 197179155 197179335 -45485018 - MER3 DNA MER1_type 0 209 2 180 0 0 0 chr1 197180567 197180587 -45483766 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2098 93 0 0 chr1 197180593 197180871 -45483482 - AluSx SINE Alu -14 298 21 254 369 40 9 chr1 197181092 197181242 -45483111 - MER5A DNA MER1_type -5 184 4 483 352 11 11 chr1 197181244 197181426 -45482927 + MIR SINE MIR 8 189 -73 271 248 70 0 chr1 197182501 197182587 -45481766 + MIR SINE MIR 61 139 -69 558 321 67 0 chr1 197182679 197182872 -45481481 - MIR SINE MIR -11 251 46 400 318 39 8 chr1 197183090 197183219 -45481134 + L2 LINE L2 3138 3270 -2 843 180 6 6 chr1 197183265 197183432 -45480921 - MER3 DNA MER1_type -87 122 3 950 215 89 5 chr1 197185546 197185760 -45478593 + MIR SINE MIR 21 252 -10 262 193 0 0 chr1 197185828 197185885 -45478468 + L2 LINE L2 3215 3271 -1 2405 83 0 6 chr1 197186010 197186323 -45478030 + AluY SINE Alu 1 311 0 186 356 14 14 chr1 197187758 197187831 -45476522 + MIR SINE MIR 45 117 -91 560 323 41 2 chr1 197188394 197188618 -45475735 + MIR SINE MIR 14 251 -11 358 203 153 0 chr1 197188625 197188726 -45475627 + MIR SINE MIR 69 185 -65 724 295 80 86 chr1 197188784 197188921 -45475432 - L2 LINE L2 -69 3244 3108 1843 162 3 10 chr1 197188921 197189235 -45475118 + AluSx SINE Alu 1 312 0 724 295 80 86 chr1 197189235 197189822 -45474531 - L2 LINE L2 -205 3108 2495 255 290 60 20 chr1 197192524 197192624 -45471729 - L2 LINE L2 -1 3271 3168 22 35 0 0 chr1 197193066 197193095 -45471258 + AT_rich Low_complexity Low_complexity 1 29 0 2508 67 0 3 chr1 197193222 197193535 -45470818 + AluSx SINE Alu 1 312 0 583 309 19 3 chr1 197194154 197194312 -45470041 + MIR SINE MIR 17 172 -67 365 0 0 22 chr1 197194577 197194623 -45469730 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 601 257 47 6 chr1 197194758 197194929 -45469424 - MIR SINE MIR -63 199 22 2292 97 3 0 chr1 197196292 197196592 -45467761 + AluSx SINE Alu 1 301 -11 676 272 11 31 chr1 197200552 197200743 -45463610 - MIR3 SINE MIR -9 199 13 196 299 87 71 chr1 197201891 197202018 -45462335 + L3 LINE CR1 1446 1574 -3 2327 98 3 3 chr1 197204078 197204373 -45459980 - AluSq SINE Alu -18 295 1 188 200 125 0 chr1 197204912 197204952 -45459401 + MIR SINE MIR 119 163 -99 222 296 136 0 chr1 197205182 197205263 -45459090 - MIR SINE MIR -96 112 21 218 319 14 0 chr1 197205360 197205432 -45458921 + MER5B DNA MER1_type 1 73 -105 1974 243 122 31 chr1 197205449 197205725 -45458628 + L1MC4 LINE L1 6719 6969 -1073 486 160 57 9 chr1 197205725 197205831 -45458522 + L1PA13 LINE L1 6052 6162 -1 1974 243 122 31 chr1 197205831 197206103 -45458250 + L1MC4 LINE L1 6969 7215 -827 333 0 0 0 chr1 197206103 197206140 -45458213 + (CA)n Simple_repeat Simple_repeat 2 38 0 1974 243 122 31 chr1 197206140 197206212 -45458141 + L1MC4 LINE L1 7215 7279 -763 1962 130 78 0 chr1 197206212 197206496 -45457857 + AluSx SINE Alu 1 306 -6 1974 243 122 31 chr1 197206496 197206753 -45457600 + L1MC4 LINE L1 7279 7678 -364 1445 173 0 4 chr1 197206800 197207037 -45457316 - MER46A DNA MER2_type 0 236 1 2113 108 7 7 chr1 197207073 197207351 -45457002 + AluSq SINE Alu 1 278 -35 34 24 0 0 chr1 197207621 197207662 -45456691 + AT_rich Low_complexity Low_complexity 1 41 0 2307 108 0 10 chr1 197207662 197207969 -45456384 + AluSx SINE Alu 1 304 -8 339 355 64 0 chr1 197208152 197208293 -45456060 - L2 LINE L2 -3 3310 3161 615 324 149 19 chr1 197208340 197208865 -45455488 + L2 LINE L2 2373 2965 -349 2203 133 0 0 chr1 197208916 197209216 -45455137 + AluSx SINE Alu 1 300 -12 301 353 0 0 chr1 197209402 197209487 -45454866 + L2 LINE L2 3188 3272 0 456 276 142 35 chr1 197209554 197209721 -45454632 + L1ME4a LINE L1 5759 5964 -157 1696 151 43 43 chr1 197209721 197210020 -45454333 + AluJo SINE Alu 1 299 -13 456 276 142 35 chr1 197210020 197210106 -45454247 + L1ME4a LINE L1 5964 6039 -82 1550 185 68 7 chr1 197210164 197210445 -45453908 - AluJo SINE Alu -14 298 1 389 124 124 0 chr1 197210449 197210538 -45453815 + L1MB7 LINE L1 6054 6153 -31 2402 94 3 0 chr1 197210567 197210864 -45453489 - AluSx SINE Alu -14 298 1 252 274 189 20 chr1 197210899 197211052 -45453301 - MIR3 SINE MIR -7 201 23 186 259 86 35 chr1 197211168 197211226 -45453127 + L3 LINE CR1 1303 1363 -214 431 277 101 13 chr1 197211528 197211687 -45452666 - MER5B DNA MER1_type -5 173 1 603 286 71 6 chr1 197215314 197215482 -45448871 + MIR SINE MIR 74 252 -10 452 282 39 26 chr1 197217915 197218071 -45446282 - MIR3 SINE MIR -45 163 6 885 295 14 4 chr1 197219189 197219467 -45444886 - LTR33 LTR ERVL -240 281 1 325 207 23 23 chr1 197219998 197220086 -45444267 + L1MC4 LINE L1 1977 6983 -1339 310 272 87 10 chr1 197220011 197220114 -45444239 - L1MC3 LINE L1 -1139 6646 6536 * 246 316 48 6 chr1 197222383 197222551 -45441802 + CT-rich Low_complexity Low_complexity 5 179 0 204 222 37 0 chr1 197223045 197223099 -45441254 + C-rich Low_complexity Low_complexity 2 57 0 233 331 153 13 chr1 197224770 197224927 -45439426 - L2 LINE L2 -641 2673 2495 256 290 60 20 chr1 197227629 197227729 -45436624 - L2 LINE L2 -1 3271 3168 182 278 306 0 chr1 197228192 197228264 -45436089 - MIR SINE MIR -67 141 48 2638 64 0 3 chr1 197228327 197228638 -45435715 + AluSx SINE Alu 1 310 -2 600 306 20 4 chr1 197229259 197229417 -45434936 + MIR SINE MIR 17 172 -67 365 0 0 22 chr1 197229682 197229728 -45434625 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 620 257 47 6 chr1 197229863 197230034 -45434319 - MIR SINE MIR -63 199 22 2393 94 3 0 chr1 197231397 197231695 -45432658 + AluSx SINE Alu 1 299 -13 200 232 0 29 chr1 197232776 197232845 -45431508 + GA-rich Low_complexity Low_complexity 2 68 0 1252 153 112 73 chr1 197234232 197234379 -45429974 - AluJo SINE Alu -1 311 171 1769 136 75 14 chr1 197234379 197234658 -45429695 - AluJo SINE Alu -16 296 1 1252 153 112 73 chr1 197234658 197234797 -45429556 - AluJo SINE Alu -141 171 14 2190 116 10 3 chr1 197235107 197235408 -45428945 + AluSq SINE Alu 2 304 -9 474 18 0 0 chr1 197235408 197235463 -45428890 + (TA)n Simple_repeat Simple_repeat 2 56 0 333 0 0 0 chr1 197235462 197235499 -45428854 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 299 281 0 12 chr1 197236462 197236544 -45427809 - Charlie4 DNA MER1_type 0 1961 1881 1500 96 64 14 chr1 197237201 197237419 -45426934 - MER30 DNA MER1_type -1 229 1 419 255 130 67 chr1 197237559 197237767 -45426586 + MIR SINE MIR 20 240 -22 2250 98 0 0 chr1 197237839 197238158 -45426195 + AluSx SINE Alu 1 319 0 209 296 105 68 chr1 197239449 197239611 -45424742 - L2 LINE L2 0 3313 3146 598 229 66 18 chr1 197240023 197240189 -45424164 - MIR SINE MIR 0 262 89 2277 109 3 3 chr1 197240490 197240793 -45423560 + AluSq SINE Alu 1 303 -10 2170 106 68 19 chr1 197242714 197243035 -45421318 - MER1B DNA MER1_type 0 337 1 246 200 0 67 chr1 197243232 197243292 -45421061 - MIR SINE MIR -1 261 206 2485 80 3 0 chr1 197243823 197244124 -45420229 - AluSp SINE Alu -11 302 1 2450 142 23 23 chr1 197244149 197244620 -45419733 + L1MB3 LINE L1 5706 6176 -7 2332 96 3 10 chr1 197244640 197244942 -45419411 + AluSp SINE Alu 1 300 -13 1094 121 5 4 chr1 197244955 197245178 -45419175 + AluSx SINE Alu 2 306 -4 189 0 0 0 chr1 197245229 197245250 -45419103 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 200 309 0 60 chr1 197245280 197245364 -45418989 - L3 LINE CR1 -24 1553 1475 2112 119 3 16 chr1 197246168 197246480 -45417873 + AluSx SINE Alu 1 308 -4 2115 108 11 0 chr1 197246489 197246794 -45417559 + AluSg SINE Alu 1 308 0 21 0 0 0 chr1 197247484 197247505 -45416848 + AT_rich Low_complexity Low_complexity 1 21 0 2902 223 116 16 chr1 197247522 197248241 -45416112 + L1MDa LINE L1 60 706 -5834 2160 123 0 10 chr1 197248241 197248549 -45415804 + AluSx SINE Alu 1 305 -7 2902 223 116 16 chr1 197248549 197248936 -45415417 + L1MDa LINE L1 706 1434 -5106 198 191 0 0 chr1 197248953 197249000 -45415353 + (TG)n Simple_repeat Simple_repeat 2 48 0 850 68 10 0 chr1 197449052 197449155 -45215198 - AluSg/x SINE Alu -75 235 132 2410 87 0 3 chr1 197449155 197449465 -45214888 - AluSp SINE Alu -4 309 1 697 163 13 33 chr1 197449465 197449618 -45214735 + Charlie1 DNA MER1_type 2612 2761 0 1801 173 10 3 chr1 197449639 197449934 -45214419 + AluJb SINE Alu 1 297 -15 761 105 65 120 chr1 197449951 197450069 -45214284 - MER53 DNA DNA 0 189 85 2473 100 0 0 chr1 197450069 197450379 -45213974 - AluSg SINE Alu 0 310 1 761 105 65 120 chr1 197450379 197450460 -45213893 - MER53 DNA DNA -104 85 1 238 248 150 35 chr1 197450464 197450577 -45213776 + L3b LINE CR1 1345 1470 -113 2453 95 3 0 chr1 197450579 197450885 -45213468 + AluSp SINE Alu 1 307 -6 2048 110 53 23 chr1 197450894 197451195 -45213158 + AluSg SINE Alu 1 310 0 401 333 68 0 chr1 197451852 197451984 -45212369 - L2 LINE L2 -16 3256 3116 324 203 16 0 chr1 197453239 197453303 -45211050 + MIR SINE MIR 66 130 -78 256 314 29 29 chr1 197453768 197453870 -45210483 + L3 LINE CR1 999 1100 -477 1182 155 39 164 chr1 197453901 197454236 -45210117 - AluJb SINE Alu -7 295 3 447 322 11 32 chr1 197454241 197454516 -45209837 + L3 LINE CR1 1088 1415 -162 376 244 78 16 chr1 197456029 197456238 -45208115 + MER34 LTR ERV1 1 265 -277 2376 119 0 0 chr1 197456271 197456664 -45207689 - AluSg SINE Alu 0 393 1 1181 121 21 109 chr1 197456783 197457022 -45207331 + AluJo SINE Alu 37 254 -58 2202 117 7 0 chr1 197457327 197457625 -45206728 - AluSx SINE Alu -12 300 1 2263 124 3 0 chr1 197457631 197457937 -45206416 - AluSx SINE Alu -5 307 1 3630 36 18 5 chr1 197458217 197458655 -45205698 - L1PA5 LINE L1 -1 6153 5710 1756 166 3 10 chr1 197458668 197458991 -45205362 - AluJb SINE Alu 0 312 1 1463 167 84 24 chr1 197458993 197459280 -45205073 - AluJb SINE Alu -8 304 1 512 262 24 86 chr1 197459366 197459576 -45204777 + MIR SINE MIR 47 243 -19 1910 81 0 0 chr1 197459878 197460113 -45204240 - AluSx SINE Alu -77 235 1 251 284 12 37 chr1 197460266 197460347 -45204006 - MIR3 SINE MIR -49 159 81 751 439 19 48 chr1 197460544 197460854 -45203499 - AluJb SINE Alu 0 302 2 849 117 0 0 chr1 197461113 197461224 -45203129 + FLAM_C SINE Alu 1 111 -32 22 56 0 0 chr1 197461239 197461275 -45203078 + AT_rich Low_complexity Low_complexity 1 36 0 612 274 40 26 chr1 197461580 197461779 -45202574 - L2 LINE L2 -8 3305 3110 2201 111 0 0 chr1 197461779 197462058 -45202295 + AluSx SINE Alu 1 279 -33 432 0 0 0 chr1 197462058 197462106 -45202247 + (CA)n Simple_repeat Simple_repeat 1 48 0 612 274 40 26 chr1 197462106 197462131 -45202222 - L2 LINE L2 -202 3111 3077 325 290 45 26 chr1 197462110 197462225 -45202128 - L2 LINE L2 -342 2972 2852 * 2622 56 0 0 chr1 197462225 197462531 -45201822 + AluY SINE Alu 1 306 -5 325 290 45 26 chr1 197462531 197462570 -45201783 - L2 LINE L2 -462 2852 2815 522 265 142 50 chr1 197462578 197462959 -45201394 - L1ME LINE L1 -354 5816 5401 1920 152 13 7 chr1 197463064 197463374 -45200979 + AluJb SINE Alu 1 312 0 364 183 0 0 chr1 197463478 197463538 -45200815 + AluSp/q SINE Alu 226 285 -18 2034 95 0 4 chr1 197463639 197463901 -45200452 - AluSg SINE Alu -49 261 1 798 181 6 62 chr1 197463982 197464142 -45200211 + FRAM SINE Alu 1 150 -26 2421 71 7 0 chr1 197464291 197464585 -45199768 - AluSp SINE Alu -17 296 1 387 134 0 15 chr1 197464976 197465043 -45199310 - MER45 DNA AcHobo -2 1579 1514 249 219 16 0 chr1 197465049 197465113 -45199240 - L1MC/D LINE L1 -2071 5737 5673 435 264 108 0 chr1 197466501 197466649 -45197704 - MIR3 SINE MIR -29 179 16 1807 149 8 0 chr1 197467151 197467413 -45196940 - AluSx SINE Alu -14 298 35 249 300 0 25 chr1 197468134 197468214 -45196139 - MIR SINE MIR 0 262 185 2083 131 0 10 chr1 197468531 197468836 -45195517 - AluSx SINE Alu -10 302 1 298 302 50 14 chr1 197469159 197469291 -45195062 + MER112 DNA MER1_type 10 149 -111 252 0 0 0 chr1 197469291 197469319 -45195034 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 344 93 0 19 chr1 197469325 197469379 -45194974 - Alu SINE Alu -21 279 227 1804 167 88 55 chr1 197469497 197469647 -45194706 + L1MDa LINE L1 1950 2094 -4446 2164 133 0 0 chr1 197469647 197469947 -45194406 + AluSq SINE Alu 1 300 -13 2312 89 0 3 chr1 197469949 197470240 -45194113 + AluSc SINE Alu 4 293 -16 1804 167 88 55 chr1 197470240 197470612 -45193741 + L1MDa LINE L1 2094 2492 -4048 762 283 88 9 chr1 197470681 197470907 -45193446 + MIR SINE MIR 2 245 -17 235 196 98 0 chr1 197470910 197470961 -45193392 + MIR SINE MIR 194 249 -13 209 175 0 25 chr1 197470928 197470968 -45193385 + L2 LINE L2 3262 3300 -13 * 276 308 82 50 chr1 197471210 197471489 -45192864 + HAL1 LINE L1 2180 2467 -40 423 311 70 53 chr1 197471816 197472006 -45192347 - L3 LINE CR1 -56 1521 1323 2022 111 54 10 chr1 197472006 197472303 -45192050 - AluSx SINE Alu -2 310 1 423 311 70 53 chr1 197472303 197472411 -45191942 - L3 LINE CR1 -254 1323 1218 439 288 138 59 chr1 197472425 197472745 -45191608 + L1ME4a LINE L1 5740 6084 -37 950 429 20 17 chr1 197472767 197473068 -45191285 + AluSx SINE Alu 1 302 0 339 355 64 0 chr1 197473253 197473394 -45190959 - L2 LINE L2 -3 3310 3161 615 324 149 19 chr1 197473441 197473966 -45190387 + L2 LINE L2 2373 2965 -349 2203 133 0 0 chr1 197474017 197474317 -45190036 + AluSx SINE Alu 1 300 -12 301 353 0 0 chr1 197474503 197474588 -45189765 + L2 LINE L2 3188 3272 0 465 244 157 39 chr1 197474655 197474822 -45189531 + L1ME4a LINE L1 5759 5962 -159 1627 157 43 43 chr1 197474822 197475121 -45189232 + AluJo SINE Alu 1 299 -13 465 244 157 39 chr1 197475121 197475182 -45189171 + L1ME4a LINE L1 5962 6014 -107 235 146 62 21 chr1 197475342 197475390 -45188963 + C-rich Low_complexity Low_complexity 4 53 0 2023 105 4 4 chr1 197475411 197475677 -45188676 - AluSx SINE Alu -46 266 1 392 258 83 23 chr1 197475701 197475833 -45188520 + L2 LINE L2 3166 3305 -8 21 57 0 0 chr1 197476030 197476065 -45188288 + AT_rich Low_complexity Low_complexity 1 35 0 1594 70 4 53 chr1 197476067 197476260 -45188093 - L1MA1 LINE L1 0 6302 6122 2271 91 3 0 chr1 197476260 197476545 -45187808 + AluSp SINE Alu 11 296 -17 1594 70 4 53 chr1 197476545 197476595 -45187758 - L1MA1 LINE L1 -180 6122 6071 276 243 157 0 chr1 197476710 197476780 -45187573 - L2 LINE L2 0 3272 3192 1032 105 0 0 chr1 197476981 197477114 -45187239 + AluSq/x SINE Alu 1 133 -180 2039 150 0 3 chr1 197477117 197477417 -45186936 + AluSx SINE Alu 1 299 -13 946 90 0 0 chr1 197478498 197478620 -45185733 + AluSc SINE Alu 174 295 -14 2564 80 3 0 chr1 197479231 197479543 -45184810 - AluSp SINE Alu 0 313 1 1003 254 17 53 chr1 197479947 197480306 -45184047 - L1MC4 LINE L1 -3 8039 7694 2367 107 0 0 chr1 197480390 197480689 -45183664 + AluSx SINE Alu 1 299 -13 1889 125 74 16 chr1 197480695 197481104 -45183249 + MER39 LTR ERV1 211 706 -1 1011 95 0 29 chr1 197481347 197481484 -45182869 - FLAM_C SINE Alu 0 133 1 768 139 0 54 chr1 197481528 197481657 -45182696 - AluSg/x SINE Alu -43 267 146 1793 141 23 0 chr1 197481665 197481928 -45182425 - AluSx SINE Alu -43 269 1 841 173 130 22 chr1 197482844 197483075 -45181278 + L1MC4 LINE L1 6918 7173 -869 1945 162 10 13 chr1 197483076 197483384 -45180969 + AluJo SINE Alu 1 307 -5 1707 107 4 0 chr1 197483614 197483848 -45180505 - AluSx SINE Alu -77 235 1 251 284 12 37 chr1 197484001 197484082 -45180271 - MIR3 SINE MIR -49 159 81 2383 96 6 16 chr1 197484270 197484583 -45179770 - AluSg SINE Alu 0 310 1 195 129 0 0 chr1 197484997 197485028 -45179325 + (TG)n Simple_repeat Simple_repeat 1 31 0 385 208 200 17 chr1 197485028 197485148 -45179205 + L2 LINE L2 3123 3264 -8 2356 95 0 16 chr1 197485729 197485865 -45178488 + AluSx SINE Alu 1 138 -174 2212 98 3 14 chr1 197485865 197486186 -45178167 + AluSp SINE Alu 1 318 0 2356 95 0 16 chr1 197486186 197486353 -45178000 + AluSx SINE Alu 138 300 -12 1020 72 0 0 chr1 197486372 197486510 -45177843 + L1PB1 LINE L1 6011 6148 -3 247 146 0 0 chr1 197487231 197487272 -45177081 - MIR SINE MIR -108 154 114 282 298 101 37 chr1 197487724 197487912 -45176441 - MIR SINE MIR -28 234 35 2343 115 3 0 chr1 197488481 197488793 -45175560 - AluSq SINE Alu 0 313 1 184 316 0 38 chr1 197489206 197489285 -45175068 - MIR3 SINE MIR -6 202 127 203 296 220 0 chr1 197489419 197489551 -45174802 - MIR3 SINE MIR -4 204 44 833 293 71 4 chr1 197492561 197492800 -45171553 - MIR SINE MIR 0 262 8 221 274 48 0 chr1 197493183 197493245 -45171108 - MIR SINE MIR -55 207 143 1779 109 0 4 chr1 197493250 197493497 -45170856 + AluSg/x SINE Alu 66 311 -1 228 226 140 43 chr1 197494818 197494891 -45169462 - MIR SINE MIR -143 119 33 2094 121 0 0 chr1 197494891 197495200 -45169153 - AluSx SINE Alu 0 309 1 228 226 140 43 chr1 197495200 197495218 -45169135 - MIR SINE MIR -229 33 18 216 267 10 50 chr1 197495777 197495878 -45168475 + GA-rich Low_complexity Low_complexity 1 97 0 193 248 43 92 chr1 197496397 197496538 -45167815 + L2 LINE L2 2067 2200 -1114 301 364 50 0 chr1 197496633 197496773 -45167580 + MIR SINE MIR 107 253 -9 2237 107 13 7 chr1 197496913 197497223 -45167130 - AluSx SINE Alu 0 312 1 2262 185 14 10 chr1 197497223 197497742 -45166611 - L1 LINE L1 -1154 4992 4472 2469 82 3 0 chr1 197497999 197498304 -45166049 + AluSg SINE Alu 1 310 0 341 210 16 0 chr1 197498977 197499039 -45165314 - MER2 DNA MER2_type -1 344 282 2307 85 0 23 chr1 197499066 197499372 -45164981 + AluSx SINE Alu 1 299 -13 1148 150 23 0 chr1 197499372 197499545 -45164808 + AluSg/x SINE Alu 134 310 -2 931 177 40 6 chr1 197499569 197499744 -45164609 - MER2 DNA MER2_type -154 191 11 621 286 61 10 chr1 197499749 197499945 -45164408 - MIR SINE MIR -25 237 32 1766 131 16 64 chr1 197500137 197500451 -45163902 - AluJb SINE Alu -13 299 1 197 338 0 44 chr1 197501985 197502053 -45162300 + MIR SINE MIR 19 83 -179 969 191 0 35 chr1 197502166 197502339 -45162014 - AluJb SINE Alu -17 295 129 2934 169 19 29 chr1 197502339 197502355 -45161998 + L1MB5 LINE L1 5480 5495 -679 2144 134 6 13 chr1 197502355 197502669 -45161684 + AluJo SINE Alu 1 312 0 2934 169 19 29 chr1 197502669 197503267 -45161086 + L1MB5 LINE L1 5495 6088 -86 2325 104 0 7 chr1 197508284 197508582 -45155771 - AluSc SINE Alu -13 296 1 2063 146 31 0 chr1 197508631 197508925 -45155428 - AluJb SINE Alu -9 303 1 250 271 0 7 chr1 197509657 197509727 -45154626 + MIR SINE MIR 25 92 -116 1739 166 3 47 chr1 197510696 197511016 -45153337 - AluJo SINE Alu -6 306 1 2422 95 0 0 chr1 197513292 197513596 -45150757 - AluSq SINE Alu -9 304 1 1935 145 0 20 chr1 197515433 197515730 -45148623 - AluJb SINE Alu -21 291 1 198 0 0 0 chr1 197515737 197515759 -45148594 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 360 262 24 48 chr1 197516561 197516687 -45147666 + MIR SINE MIR 65 187 -75 1203 242 12 79 chr1 197517355 197517760 -45146593 + L2 LINE L2 2191 2568 -746 1844 84 95 8 chr1 197517793 197518055 -45146298 + AluSx SINE Alu 15 299 -13 243 163 61 0 chr1 197518174 197518223 -45146130 + L2 LINE L2 3220 3271 -1 505 324 196 24 chr1 197519502 197520442 -45143911 + L2 LINE L2 1560 2696 -618 2290 113 3 0 chr1 197520442 197520752 -45143601 - AluSx SINE Alu -1 311 1 505 324 196 24 chr1 197520752 197520847 -45143506 + L2 LINE L2 2696 2773 -541 251 302 208 30 chr1 197520944 197521242 -45143111 + L2 LINE L2 2921 3271 -1 520 168 353 0 chr1 197521348 197521521 -45142832 - MIR SINE MIR -27 235 2 214 254 0 0 chr1 197521999 197522054 -45142299 + (CTG)n Simple_repeat Simple_repeat 1 55 0 414 279 124 57 chr1 197522857 197523334 -45141019 + MLT1J LTR MaLR 1 509 -2 276 203 54 14 chr1 197523375 197523449 -45140904 - MARNA DNA Mariner -17 569 493 283 242 16 0 chr1 197525011 197525073 -45139280 - MIR SINE MIR -119 143 81 205 269 45 30 chr1 197527494 197527561 -45136792 - L3b LINE CR1 -208 1375 1308 2320 102 0 3 chr1 197527764 197528067 -45136286 - AluSg SINE Alu -8 302 1 2131 121 10 0 chr1 197528896 197529186 -45135167 + AluSx SINE Alu 1 293 -19 2480 87 0 3 chr1 197529379 197529691 -45134662 - AluY SINE Alu 0 311 1 2241 122 0 13 chr1 197530894 197531206 -45133147 - AluJb SINE Alu -4 308 1 180 0 0 0 chr1 197531894 197531914 -45132439 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1982 176 0 0 chr1 197532258 197532559 -45131794 + AluJo SINE Alu 1 301 -11 231 254 113 0 chr1 197532576 197532647 -45131706 - MIR SINE MIR -108 154 76 216 241 0 0 chr1 197532841 197532895 -45131458 + G-rich Low_complexity Low_complexity 1 54 0 201 74 0 0 chr1 197533009 197533036 -45131317 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2320 61 11 0 chr1 197534369 197534647 -45129706 + AluSx SINE Alu 1 281 -31 465 19 0 0 chr1 197534647 197534701 -45129652 + (CA)n Simple_repeat Simple_repeat 1 54 0 31 58 0 0 chr1 197535668 197535720 -45128633 + GC_rich Low_complexity Low_complexity 1 52 0 32 67 0 0 chr1 197535790 197535850 -45128503 + GC_rich Low_complexity Low_complexity 1 60 0 902 160 55 11 chr1 197536759 197536940 -45127413 + MER5A DNA MER1_type 1 189 0 751 263 97 14 chr1 197537795 197538012 -45126341 + MIR SINE MIR 6 240 -22 384 346 159 0 chr1 197538483 197538697 -45125656 + MIR SINE MIR 1 248 -14 398 279 61 74 chr1 197539583 197539812 -45124541 - L1ME4a LINE L1 -235 5886 5661 2252 95 0 35 chr1 197539845 197540161 -45124192 - AluSx SINE Alu -7 305 1 220 261 174 29 chr1 197540694 197540832 -45123521 - MIR SINE MIR 0 262 105 615 94 0 85 chr1 197540885 197540966 -45123387 - MER30 DNA MER1_type 0 230 158 2462 85 3 0 chr1 197540966 197541272 -45123081 - AluSp SINE Alu -6 307 1 615 94 0 85 chr1 197541272 197541296 -45123057 - MER30 DNA MER1_type -72 158 134 331 78 0 0 chr1 197541336 197541387 -45122966 + AluSp/q SINE Alu 249 299 -4 799 71 50 50 chr1 197541424 197541565 -45122788 - MER30 DNA MER1_type -88 142 2 210 281 108 54 chr1 197541673 197541840 -45122513 - L2 LINE L2 -3 3310 3135 666 242 27 16 chr1 197542150 197542336 -45122017 + MER5A DNA MER1_type 2 189 0 2597 44 0 3 chr1 197542446 197542741 -45121612 + AluSc SINE Alu 1 294 -15 695 110 0 28 chr1 197542775 197542925 -45121428 + AluSg/x SINE Alu 182 312 0 519 292 26 60 chr1 197543379 197543551 -45120802 + L1ME4a LINE L1 5568 5723 -398 2164 137 0 3 chr1 197543551 197543858 -45120495 + AluSx SINE Alu 1 306 -6 519 292 26 60 chr1 197543858 197544034 -45120319 + L1ME4a LINE L1 5723 5904 -217 386 244 101 18 chr1 197544034 197544183 -45120170 + MIR SINE MIR 37 197 -65 2523 70 0 10 chr1 197544183 197544485 -45119868 + AluY SINE Alu 1 299 -12 386 244 101 18 chr1 197544485 197544496 -45119857 + MIR SINE MIR 197 206 -56 22 70 0 0 chr1 197544599 197544642 -45119711 + AT_rich Low_complexity Low_complexity 1 43 0 800 174 138 6 chr1 197545204 197545371 -45118982 + AluJb SINE Alu 83 271 -41 216 0 0 0 chr1 197545396 197545420 -45118933 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2345 88 14 0 chr1 197545630 197545924 -45118429 + AluSp SINE Alu 5 302 -11 1328 116 0 0 chr1 197545924 197546096 -45118257 + AluSq SINE Alu 134 305 -8 520 280 106 10 chr1 197546505 197546712 -45117641 - MIR SINE MIR -10 252 35 2132 142 0 6 chr1 197546738 197547049 -45117304 - AluJb SINE Alu -3 309 1 470 179 0 24 chr1 197547082 197547199 -45117154 + AluSg/x SINE Alu 203 317 0 2382 99 3 3 chr1 197547207 197547519 -45116834 + AluSq SINE Alu 1 312 -1 24 0 0 0 chr1 197547496 197547520 -45116833 + AT_rich Low_complexity Low_complexity 1 24 0 365 194 243 10 chr1 197547520 197547623 -45116730 + MER5A DNA MER1_type 63 189 0 27 49 0 0 chr1 197547917 197547958 -45116395 + AT_rich Low_complexity Low_complexity 1 41 0 693 150 0 71 chr1 197548370 197548497 -45115856 + AluJb SINE Alu 2 119 -193 473 194 0 0 chr1 197548525 197548618 -45115735 - L2 LINE L2 0 3313 3221 397 290 40 0 chr1 197548632 197548756 -45115597 - HAL1 LINE L1 -1794 713 585 263 212 177 44 chr1 197548795 197548908 -45115445 - HAL1 LINE L1 -2023 484 357 786 228 154 16 chr1 197548932 197549178 -45115175 - HAL1 LINE L1 -2203 304 25 2156 132 0 0 chr1 197549219 197549515 -45114838 - AluSx SINE Alu -16 296 1 2252 127 0 0 chr1 197549524 197549831 -45114522 - AluSc SINE Alu -2 307 1 706 242 47 5 chr1 197550045 197550235 -45114118 + L1MC4a LINE L1 5652 5849 -1959 201 222 0 32 chr1 197550290 197550353 -45114000 + (TA)n Simple_repeat Simple_repeat 2 62 0 252 319 152 0 chr1 197551101 197551239 -45113114 - MIR3 SINE MIR -8 200 42 21 36 0 0 chr1 197552514 197552542 -45111811 + GC_rich Low_complexity Low_complexity 1 28 0 299 321 30 23 chr1 197553495 197553626 -45110727 - MER5A DNA MER1_type -1 188 57 2063 102 0 7 chr1 197553643 197553962 -45110391 + AluSx SINE Alu 1 317 0 817 181 0 0 chr1 197555121 197555254 -45109099 - FLAM_C SINE Alu -10 133 1 2194 97 0 10 chr1 197555666 197555982 -45108371 + AluSp SINE Alu 1 313 0 33 25 0 0 chr1 197556304 197556344 -45108009 + AT_rich Low_complexity Low_complexity 1 40 0 2308 101 0 0 chr1 197556613 197556911 -45107442 + AluSx SINE Alu 1 298 -14 523 272 79 40 chr1 197556967 197557124 -45107229 + MIR SINE MIR 53 202 -60 2121 98 52 0 chr1 197557124 197557411 -45106942 + AluSx SINE Alu 1 302 -10 2396 86 3 13 chr1 197557413 197557728 -45106625 + AluSx SINE Alu 1 312 0 523 272 79 40 chr1 197557728 197557769 -45106584 + MIR SINE MIR 202 262 0 274 304 65 0 chr1 197557764 197557856 -45106497 - L2 LINE L2 -6 3266 3169 * 2087 129 7 3 chr1 197558247 197558556 -45105797 + AluSx SINE Alu 1 310 -2 392 276 88 80 chr1 197558981 197559124 -45105229 + MIR SINE MIR 8 155 -107 1463 148 59 30 chr1 197559124 197559395 -45104958 + L1MB7 LINE L1 5890 6168 -16 392 276 88 80 chr1 197559395 197559501 -45104852 + MIR SINE MIR 155 259 -3 249 33 0 0 chr1 197559509 197559539 -45104814 + (TG)n Simple_repeat Simple_repeat 1 30 0 2166 127 3 0 chr1 197560058 197560358 -45103995 - AluSx SINE Alu -11 301 1 727 62 0 18 chr1 197560395 197560507 -45103846 + (TCCCC)n Simple_repeat Simple_repeat 5 114 0 1640 146 64 4 chr1 197560507 197560787 -45103566 - AluSq SINE Alu -12 301 5 23 0 0 0 chr1 197561204 197561227 -45103126 + AT_rich Low_complexity Low_complexity 1 23 0 308 156 44 22 chr1 197561837 197561927 -45102426 + C-rich Low_complexity Low_complexity 4 95 0 2013 105 4 4 chr1 197561948 197562214 -45102139 - AluSx SINE Alu -46 266 1 347 290 65 58 chr1 197562232 197562370 -45101983 + L2 LINE L2 3126 3264 -8 21 57 0 0 chr1 197562567 197562602 -45101751 + AT_rich Low_complexity Low_complexity 1 35 0 1629 70 4 53 chr1 197562604 197562797 -45101556 - L1MA1 LINE L1 0 6302 6122 2255 91 3 0 chr1 197562797 197563082 -45101271 + AluSp SINE Alu 11 296 -17 1629 70 4 53 chr1 197563082 197563132 -45101221 - L1MA1 LINE L1 -180 6122 6071 247 243 157 0 chr1 197563247 197563317 -45101036 - L2 LINE L2 0 3272 3192 1023 105 0 0 chr1 197563518 197563651 -45100702 + AluSq/x SINE Alu 1 133 -179 2008 141 0 10 chr1 197563654 197563951 -45100402 + AluSx SINE Alu 1 294 -18 940 90 0 0 chr1 197565035 197565157 -45099196 + AluSc SINE Alu 174 295 -14 2540 80 3 0 chr1 197565768 197566080 -45098273 - AluSp SINE Alu 0 313 1 1040 242 22 58 chr1 197566484 197566843 -45097510 - L1MC4 LINE L1 -3 8039 7694 2240 105 20 20 chr1 197566927 197567233 -45097120 + AluSq SINE Alu 1 306 -7 1077 223 127 26 chr1 197567265 197567409 -45096944 - L1MC4 LINE L1 -710 7332 7204 1906 162 10 13 chr1 197567409 197567717 -45096636 - AluJo SINE Alu -5 307 1 1077 223 127 26 chr1 197567717 197567949 -45096404 - L1MC4 LINE L1 -838 7204 6918 1773 141 23 0 chr1 197568865 197569128 -45095225 + AluSx SINE Alu 1 269 -43 759 132 0 54 chr1 197569136 197569265 -45095088 + AluSg/x SINE Alu 148 269 -43 988 95 0 29 chr1 197569309 197569446 -45094907 + FLAM_C SINE Alu 1 133 0 2116 145 111 51 chr1 197569689 197570104 -45094249 - MER39 LTR ERV1 -1 706 192 2350 107 0 0 chr1 197570104 197570403 -45093950 - AluSx SINE Alu -13 299 1 2116 145 111 51 chr1 197570403 197570601 -45093752 - MER39 LTR ERV1 -515 192 7 2317 119 0 0 chr1 197571110 197571412 -45092941 - AluSq SINE Alu -11 302 1 1065 179 88 74 chr1 197571445 197571742 -45092611 - AluJb SINE Alu -1 301 1 309 230 142 0 chr1 197571744 197571857 -45092496 + MIR SINE MIR 124 252 -10 24 0 0 0 chr1 197572357 197572381 -45091972 + AT_rich Low_complexity Low_complexity 1 24 0 452 243 14 56 chr1 197572430 197572574 -45091779 - MIR3 SINE MIR -6 202 65 2205 95 34 3 chr1 197573354 197573649 -45090704 - AluSx SINE Alu -8 304 1 188 321 0 0 chr1 197573823 197573876 -45090477 - L2 LINE L2 -23 3249 3197 194 85 0 64 chr1 197574821 197574868 -45089485 + (T)n Simple_repeat Simple_repeat 1 44 0 630 118 9 18 chr1 197574900 197575010 -45089343 - L1MA5 LINE L1 -5 6295 6187 1935 112 7 22 chr1 197575436 197575714 -45088639 + Tigger3(Golem) DNA MER2_type 2755 3028 -1 264 273 15 0 chr1 197576112 197576178 -45088175 + CT-rich Low_complexity Low_complexity 1 67 0 2149 123 7 0 chr1 197577941 197578249 -45086104 - AluSx SINE Alu -2 310 1 824 260 48 4 chr1 197578249 197578480 -45085873 + MER112 DNA MER1_type 14 254 -6 722 181 0 0 chr1 197578487 197578603 -45085750 + FLAM_A SINE Alu 9 124 -18 21 36 0 0 chr1 197578750 197578778 -45085575 + AT_rich Low_complexity Low_complexity 1 28 0 2185 122 0 7 chr1 197578778 197579074 -45085279 - AluSx SINE Alu -18 294 1 903 250 151 8 chr1 197579109 197579361 -45084992 + AluJo SINE Alu 3 290 -12 2144 132 3 0 chr1 197579396 197579700 -45084653 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 197579701 197579722 -45084631 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr1 197580888 197580910 -45083443 + (TG)n Simple_repeat Simple_repeat 1 22 0 2365 94 0 0 chr1 197581169 197581467 -45082886 - AluSq SINE Alu -15 298 1 225 0 0 0 chr1 197581467 197581492 -45082861 + (T)n Simple_repeat Simple_repeat 1 25 0 1905 126 36 26 chr1 197581563 197581872 -45082481 - AluJb SINE Alu 0 312 1 1012 144 177 0 chr1 197582094 197582275 -45082078 + AluJo SINE Alu 78 290 -22 378 0 0 0 chr1 197582292 197582334 -45082019 + (CA)n Simple_repeat Simple_repeat 1 42 0 2264 99 0 0 chr1 197582347 197582631 -45081722 + AluSq SINE Alu 12 295 -18 1852 160 41 0 chr1 197583226 197583520 -45080833 + AluJb SINE Alu 1 306 -6 2699 69 39 3 chr1 197583521 197583882 -45080471 + L1PA8 LINE L1 5799 6172 0 2385 84 0 3 chr1 197584353 197584652 -45079701 - AluY SINE Alu -13 298 1 182 277 46 46 chr1 197584678 197584743 -45079610 + L2 LINE L2 3193 3257 -15 420 253 170 57 chr1 197584744 197584849 -45079504 + MIR SINE MIR 23 115 -147 1776 170 24 3 chr1 197584849 197585138 -45079215 - AluJb SINE Alu -17 295 1 420 253 170 57 chr1 197585138 197585226 -45079127 + MIR SINE MIR 115 238 -24 2437 101 0 0 chr1 197586100 197586406 -45077947 - AluSx SINE Alu -6 306 1 1977 160 0 6 chr1 197586755 197587068 -45077285 - AluJb SINE Alu -1 311 1 923 148 0 7 chr1 197587248 197587383 -45076970 + AluJo SINE Alu 1 134 -178 2406 97 6 0 chr1 197587484 197587795 -45076558 - AluSp SINE Alu 0 313 1 341 239 0 43 chr1 197588128 197588220 -45076133 - L2 LINE L2 0 3313 3226 22 0 0 0 chr1 197588284 197588306 -45076047 + AT_rich Low_complexity Low_complexity 1 22 0 2264 66 31 0 chr1 197588602 197588888 -45075465 + AluY SINE Alu 4 298 -13 2336 95 7 0 chr1 197588954 197589259 -45075094 + AluSp SINE Alu 1 307 -6 567 113 0 0 chr1 197589260 197589340 -45075013 + MER30 DNA MER1_type 151 230 0 218 194 179 0 chr1 197589393 197589460 -45074893 + MIR SINE MIR 105 183 -79 2219 95 0 35 chr1 197590064 197590380 -45073973 + AluSx SINE Alu 1 305 -7 374 288 106 0 chr1 197591528 197591660 -45072693 - MIR SINE MIR -14 248 103 711 258 97 14 chr1 197592213 197592430 -45071923 - MIR SINE MIR -22 240 6 951 160 55 11 chr1 197593285 197593466 -45070887 - MER5A DNA MER1_type 0 189 1 2161 139 10 0 chr1 197594137 197594446 -45069907 - AluSx SINE Alu 0 312 1 1825 150 6 54 chr1 197594943 197595256 -45069097 + AluJb SINE Alu 1 298 -14 2262 92 0 3 chr1 197595302 197595586 -45068767 + AluSx SINE Alu 2 284 -28 2146 113 3 7 chr1 197596082 197596383 -45067970 - AluSx SINE Alu -7 305 6 628 225 39 130 chr1 197596430 197596737 -45067616 - MLT1J LTR MaLR -4 507 229 403 343 41 37 chr1 197597050 197597318 -45067035 - L2 LINE L2 -52 3220 2952 277 178 47 124 chr1 197599042 197599171 -45065182 + MER5B DNA MER1_type 31 149 -29 * 721 267 17 0 chr1 197599149 197599321 -45065032 - MIR SINE MIR -86 176 2 1970 95 50 18 chr1 197599439 197599722 -45064631 - AluSg SINE Alu -18 292 1 1863 158 3 16 chr1 197600133 197600443 -45063910 - AluJb SINE Alu -6 306 1 654 139 157 9 chr1 197601071 197601186 -45063167 - FLAM_C SINE Alu 0 133 2 324 255 221 7 chr1 197601355 197601504 -45062849 - L1MC4a LINE L1 -1905 5903 5723 1157 145 8 100 chr1 197601505 197601754 -45062599 - AluSg/x SINE Alu 0 310 85 559 238 38 85 chr1 197601768 197602003 -45062350 - L1MC4a LINE L1 -2071 5737 5514 2198 113 10 0 chr1 197602166 197602468 -45061885 + AluSx SINE Alu 1 305 -7 347 308 86 27 chr1 197602534 197602755 -45061598 + MIR SINE MIR 20 253 -9 2485 61 0 0 chr1 197602797 197603091 -45061262 + AluY SINE Alu 2 295 -16 680 164 0 9 chr1 197603128 197603244 -45061109 - AluJo SINE Alu -8 304 190 854 179 14 0 chr1 197603244 197603384 -45060969 - AluJo SINE Alu -168 144 3 2423 91 3 0 chr1 197604038 197604345 -45060008 + AluSp SINE Alu 1 308 -5 438 219 35 35 chr1 197604737 197604851 -45059502 - MER94 DNA DNA -1 133 20 229 192 0 19 chr1 197605623 197605675 -45058678 + LTR66 LTR ERVL 389 439 -171 541 213 57 7 chr1 197605999 197606140 -45058213 - MIR SINE MIR -13 249 102 1853 172 30 0 chr1 197606483 197606785 -45057568 + AluSx SINE Alu 1 311 -1 2005 154 3 0 chr1 197606922 197607221 -45057132 + AluSx SINE Alu 1 300 -12 1853 173 3 3 chr1 197608168 197608469 -45055884 + AluJo SINE Alu 1 301 -11 1937 116 53 14 chr1 197609779 197610064 -45054289 - AluSg SINE Alu -14 296 1 2688 108 14 3 chr1 197610392 197610763 -45053590 - THE1C LTR MaLR 0 375 1 10530 103 32 27 chr1 197610763 197611864 -45052489 - THE1C-int LTR MaLR 0 1580 487 2250 92 36 16 chr1 197611864 197612169 -45052184 - AluSx SINE Alu 0 312 2 10530 103 32 27 chr1 197612169 197612277 -45052076 - THE1C-int LTR MaLR -1093 487 381 2234 98 4 0 chr1 197612277 197612587 -45051766 + AluSx SINE Alu 5 315 0 10530 103 32 27 chr1 197612587 197612946 -45051407 - THE1C-int LTR MaLR -1199 381 1 1438 114 84 48 chr1 197612946 197613243 -45051110 - THE1C LTR MaLR 0 375 1 975 234 56 78 chr1 197613355 197613466 -45050887 - L1MC4 LINE L1 -4 8038 7926 264 59 0 0 chr1 197613466 197613500 -45050853 + (CA)n Simple_repeat Simple_repeat 2 35 0 975 234 56 78 chr1 197613500 197613543 -45050810 - L1MC4 LINE L1 -116 7926 7884 1837 109 20 68 chr1 197613543 197613837 -45050516 + AluSx SINE Alu 1 280 -32 975 234 56 78 chr1 197613837 197614142 -45050211 - L1MC4 LINE L1 -158 7884 7588 377 204 61 51 chr1 197614619 197614717 -45049636 - L2 LINE L2 -36 3236 3138 1265 152 43 26 chr1 197614721 197614951 -45049402 + MER46A DNA MER2_type 3 236 0 3738 106 80 164 chr1 197615003 197615080 -45049273 + Tigger3(Golem) DNA MER2_type 1 83 -2946 2462 82 3 0 chr1 197615080 197615385 -45048968 + AluSp SINE Alu 1 306 -7 3738 106 80 164 chr1 197615385 197615874 -45048479 + Tigger3(Golem) DNA MER2_type 83 611 -2418 1019 189 47 5 chr1 197615874 197616065 -45048288 + AluJo SINE Alu 84 282 -30 180 0 0 0 chr1 197616070 197616090 -45048263 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3738 106 80 164 chr1 197616090 197616661 -45047692 + Tigger3(Golem) DNA MER2_type 615 3010 -19 212 350 103 15 chr1 197617418 197617621 -45046732 - MIR SINE MIR -12 250 30 214 320 25 25 chr1 197617988 197618110 -45046243 - L2 LINE L2 -769 2545 2424 2264 98 10 3 chr1 197618356 197618653 -45045700 + AluSp SINE Alu 1 299 -14 194 250 78 52 chr1 197619018 197619134 -45045219 + MIR SINE MIR 105 223 -39 219 139 0 0 chr1 197619605 197619641 -45044712 + (T)n Simple_repeat Simple_repeat 1 36 0 2432 77 0 3 chr1 197620686 197620983 -45043370 + AluSg SINE Alu 1 296 -14 186 209 0 0 chr1 197620990 197621033 -45043320 + (TATG)n Simple_repeat Simple_repeat 4 46 0 1356 100 0 0 chr1 197621858 197622038 -45042315 + AluSg/x SINE Alu 131 310 -2 1803 108 4 4 chr1 197624172 197624421 -45039932 + AluSx SINE Alu 63 311 -1 1684 161 30 13 chr1 197625885 197626184 -45038169 - AluJo SINE Alu -8 304 1 2091 113 44 0 chr1 197626644 197626937 -45037416 - AluSx SINE Alu -6 306 1 1530 196 29 76 chr1 197627012 197627395 -45036958 - MLT1A1 LTR MaLR 0 365 1 1954 128 42 10 chr1 197627515 197627803 -45036550 + AluSx SINE Alu 3 299 -13 2442 76 0 0 chr1 197627883 197628172 -45036181 + AluY SINE Alu 1 289 -22 1591 207 64 43 chr1 197628449 197628888 -45035465 - LTR2 LTR ERV1 -1 448 1 2194 112 0 7 chr1 197629711 197630007 -45034346 + AluSx SINE Alu 1 294 -18 2302 108 7 0 chr1 197630024 197630320 -45034033 - AluSx SINE Alu -14 298 1 2327 114 0 0 chr1 197630468 197630774 -45033579 - AluSg SINE Alu -4 306 1 460 241 0 19 chr1 197630864 197630972 -45033381 + AluJb SINE Alu 114 219 -93 815 173 7 7 chr1 197631010 197631149 -45033204 + AluJo SINE Alu 1 139 -173 1544 82 0 0 chr1 197631149 197631332 -45033021 + AluSq SINE Alu 1 183 -130 1646 115 96 11 chr1 197631397 197631658 -45032695 + AluJb SINE Alu 1 283 -29 1696 116 79 58 chr1 197631902 197632194 -45032159 - AluSq SINE Alu -13 300 3 1987 133 0 0 chr1 197632231 197632509 -45031844 - AluY SINE Alu -33 278 1 2249 99 7 3 chr1 197633018 197633321 -45031032 - AluSq SINE Alu -9 304 1 290 353 27 12 chr1 197633337 197633595 -45030758 + L1MEc LINE L1 1556 1817 -4579 1916 125 0 46 chr1 197633654 197633957 -45030396 + AluSx SINE Alu 21 309 -3 575 181 9 9 chr1 197634027 197634132 -45030221 - FRAM SINE Alu -12 164 60 1076 172 60 56 chr1 197634220 197634453 -45029900 + LTR8A LTR ERV1 34 267 -460 2271 114 0 3 chr1 197634455 197634763 -45029590 + AluSg SINE Alu 1 307 -3 399 185 8 0 chr1 197634763 197634842 -45029511 + PABL_B LTR ERV1 579 660 0 838 193 28 11 chr1 197634938 197635114 -45029239 + MLT1A1 LTR MaLR 187 365 0 2312 88 3 0 chr1 197635694 197636020 -45028333 + AluSx SINE Alu 1 327 0 559 317 14 41 chr1 197636038 197636328 -45028025 + LTR16A LTR ERVL 18 299 -151 * 563 152 247 51 chr1 197636325 197636483 -45027870 + MER96B DNA MER1_type? 17 205 -212 301 269 111 9 chr1 197636729 197636837 -45027516 - L2 LINE L2 -1 3312 3194 2179 142 0 0 chr1 197636982 197637284 -45027069 + AluJb SINE Alu 1 302 -10 2966 158 25 19 chr1 197637330 197637854 -45026499 - MER57-int LTR ERV1 -1186 6351 5825 2181 127 3 0 chr1 197638094 197638401 -45025952 + AluSq SINE Alu 1 308 -5 2064 135 4 0 chr1 197638410 197638691 -45025662 + AluSq SINE Alu 1 282 -31 189 0 0 0 chr1 197638694 197638715 -45025638 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2276 65 0 28 chr1 197638715 197639038 -45025315 + AluSx SINE Alu 1 315 0 2630 78 28 0 chr1 197639038 197639397 -45024956 - THE1C-int LTR MaLR -1211 369 1 1438 114 84 48 chr1 197639397 197639694 -45024659 - THE1C LTR MaLR 0 375 1 974 247 43 67 chr1 197639806 197639917 -45024436 - L1MC4 LINE L1 -4 8038 7926 255 61 0 0 chr1 197639917 197639950 -45024403 + (CA)n Simple_repeat Simple_repeat 2 34 0 974 247 43 67 chr1 197639950 197639994 -45024359 - L1MC4 LINE L1 -116 7926 7882 1837 109 20 68 chr1 197639994 197640288 -45024065 + AluSx SINE Alu 1 280 -32 974 247 43 67 chr1 197640288 197640593 -45023760 - L1MC4 LINE L1 -160 7882 7588 377 204 61 51 chr1 197641070 197641168 -45023185 - L2 LINE L2 -36 3236 3138 1265 152 43 26 chr1 197641172 197641402 -45022951 + MER46A DNA MER2_type 3 236 0 2402 146 123 60 chr1 197641454 197641531 -45022822 + Tigger3b DNA MER2_type 1 72 -2956 2462 82 3 0 chr1 197641531 197641836 -45022517 + AluSp SINE Alu 1 306 -7 2402 146 123 60 chr1 197641836 197642325 -45022028 + Tigger3b DNA MER2_type 72 603 -628 1019 189 47 5 chr1 197642325 197642516 -45021837 + AluJo SINE Alu 84 282 -30 180 0 0 0 chr1 197642521 197642541 -45021812 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3696 100 51 12 chr1 197642541 197643112 -45021241 + Tigger3b DNA MER2_type 621 1213 -19 889 89 30 22 chr1 197643618 197643753 -45020600 - AluSg1 SINE Alu -173 136 1 1639 211 75 26 chr1 197643841 197644295 -45020058 - Charlie1b DNA MER1_type 0 523 48 265 266 93 46 chr1 197644860 197645097 -45019256 - L1ME LINE L1 -329 5792 5545 24 0 0 0 chr1 197645508 197645532 -45018821 + AT_rich Low_complexity Low_complexity 1 24 0 2428 97 0 0 chr1 197646305 197646603 -45017750 + AluSx SINE Alu 1 298 -14 424 124 124 0 chr1 197646632 197646721 -45017632 - L1MB7 LINE L1 -31 6153 6054 1511 184 72 7 chr1 197646725 197647002 -45017351 + AluJo SINE Alu 1 295 -17 321 129 82 24 chr1 197647103 197647188 -45017165 - Charlie1b DNA MER1_type -195 328 239 315 93 31 124 chr1 197647199 197647246 -45017107 - L1MB2 LINE L1 -2 6169 6134 2481 75 0 0 chr1 197647246 197647541 -45016812 - AluY SINE Alu -16 295 1 315 93 31 124 chr1 197647541 197647590 -45016763 - L1MB2 LINE L1 -37 6134 6082 652 133 0 0 chr1 197647594 197647692 -45016661 + AluJb SINE Alu 200 297 -15 727 150 9 187 chr1 197647713 197647862 -45016491 - Charlie1b DNA MER1_type -2545 216 134 1480 121 130 17 chr1 197647862 197648101 -45016252 + AluJb SINE Alu 21 286 -26 727 150 9 187 chr1 197648101 197648212 -45016141 - Charlie1b DNA MER1_type -2627 134 5 916 144 20 0 chr1 197648659 197648805 -45015548 - BC200 scRNA scRNA -51 149 1 2255 85 31 3 chr1 197649116 197649410 -45014943 - AluSp SINE Alu -11 302 1 227 274 145 43 chr1 197649441 197649558 -45014795 + L2 LINE L2 3169 3297 -16 232 243 14 29 chr1 197651316 197651386 -45012967 - MER5A DNA MER1_type -6 183 115 1881 125 7 40 chr1 197651598 197651902 -45012451 + AluJb SINE Alu 1 294 -18 6301 222 36 18 chr1 197652159 197654151 -45010202 - L1M2 LINE L1 -718 5482 3452 694 355 86 8 chr1 197654155 197654790 -45009563 - L1M2 LINE L1 -5174 781 256 1890 194 46 7 chr1 197655034 197655451 -45008902 + MER4C LTR ERV1 1 433 -32 814 228 76 46 chr1 197655622 197656040 -45008313 + L2 LINE L2 2719 3138 -175 2221 108 0 3 chr1 197656046 197656343 -45008010 - AluSx SINE Alu -16 296 1 926 217 0 0 chr1 197656345 197656511 -45007842 - AluSg/x SINE Alu -13 297 132 1962 170 0 3 chr1 197656511 197656817 -45007536 - AluJb SINE Alu -7 305 1 486 259 75 7 chr1 197656821 197656968 -45007385 + L2 LINE L2 3139 3295 -18 186 71 0 0 chr1 197656969 197656997 -45007356 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2259 113 3 3 chr1 197657005 197657305 -45007048 - AluSx SINE Alu -12 300 1 192 283 17 17 chr1 197657335 197657395 -45006958 - L3 LINE CR1 -209 1368 1309 2410 68 0 0 chr1 197658538 197658819 -45005534 + AluY SINE Alu 2 282 -29 546 108 0 0 chr1 197658830 197658913 -45005440 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 1669 96 5 14 chr1 197659052 197659270 -45005083 - AluSx SINE Alu -96 216 1 207 293 13 53 chr1 197659333 197659408 -45004945 + L2 LINE L2 3237 3308 -5 397 266 181 50 chr1 197659494 197659542 -45004811 + MIR SINE MIR 38 78 -184 2088 122 10 3 chr1 197659542 197659830 -45004523 - AluSx SINE Alu -22 290 1 397 266 181 50 chr1 197659830 197659980 -45004373 + MIR SINE MIR 78 262 0 2250 60 68 0 chr1 197660019 197660300 -45004053 - AluY SINE Alu -6 305 6 180 0 0 0 chr1 197660405 197660425 -45003928 + (T)n Simple_repeat Simple_repeat 1 20 0 204 213 225 12 chr1 197661703 197661783 -45002570 - MIR SINE MIR -70 192 96 638 260 51 47 chr1 197661819 197662073 -45002280 + MIR SINE MIR 8 262 0 230 251 0 0 chr1 197662106 197662163 -45002190 - MIR SINE MIR -122 86 29 2445 57 0 0 chr1 197662292 197662571 -45001782 - AluY SINE Alu -32 279 1 299 317 48 42 chr1 197662620 197662787 -45001566 - MIR3 SINE MIR -22 186 19 210 71 0 0 chr1 197663058 197663086 -45001267 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 240 324 0 0 chr1 197664121 197664192 -45000161 - L2 LINE L2 0 3272 3202 262 294 133 82 chr1 197664285 197664401 -44999952 + L2 LINE L2 2980 3089 -183 2393 91 3 0 chr1 197664401 197664697 -44999656 + AluSp SINE Alu 1 297 -16 262 294 133 82 chr1 197664697 197664859 -44999494 + L2 LINE L2 3089 3272 0 * 355 286 0 11 chr1 197664850 197664941 -44999412 - MIR SINE MIR -100 108 19 188 245 41 0 chr1 197665489 197665538 -44998815 + MIR SINE MIR 47 97 -165 2327 33 44 4 chr1 197665710 197665982 -44998371 + AluY SINE Alu 1 283 -28 2211 73 44 0 chr1 197666212 197666509 -44997844 + AluSq SINE Alu 1 309 0 317 257 40 10 chr1 197666959 197667060 -44997293 + MIR SINE MIR 30 133 -75 221 333 36 22 chr1 197668121 197668259 -44996094 - L2 LINE L2 -624 2690 2551 2624 52 3 0 chr1 197669304 197669612 -44994741 + AluSp SINE Alu 5 313 0 182 243 14 71 chr1 197671453 197671523 -44992830 + L2 LINE L2 3160 3225 -88 224 152 0 0 chr1 197672354 197672387 -44991966 + MIR SINE MIR 33 65 -143 2100 120 3 11 chr1 197672389 197672704 -44991649 - AluSx SINE Alu 0 313 1 553 248 31 12 chr1 197674565 197674726 -44989627 + MIR3 SINE MIR 18 181 -27 203 328 31 0 chr1 197675139 197675203 -44989150 + MIR SINE MIR 50 115 -147 182 337 11 22 chr1 197675711 197675803 -44988550 + MIR SINE MIR 17 107 -101 463 208 39 79 chr1 197675830 197676008 -44988345 + MIR SINE MIR 80 250 -12 2384 81 0 3 chr1 197676018 197676316 -44988037 - AluSg SINE Alu -13 297 1 249 139 0 0 chr1 197677266 197677309 -44987044 + (CA)n Simple_repeat Simple_repeat 1 43 0 207 162 0 0 chr1 197677357 197677394 -44986959 + (CA)n Simple_repeat Simple_repeat 1 37 0 409 231 46 28 chr1 197678138 197678246 -44986107 - MIR SINE MIR -74 188 79 334 226 24 73 chr1 197679085 197679209 -44985144 + MIR SINE MIR 48 165 -97 2337 91 0 29 chr1 197679447 197679754 -44984599 - AluSq SINE Alu -15 298 1 462 258 56 0 chr1 197680192 197680329 -44984024 - MIR SINE MIR -65 143 11 2539 87 3 0 chr1 197680360 197680672 -44983681 - AluSp SINE Alu 0 313 1 195 42 0 0 chr1 197681699 197681723 -44982630 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 228 305 53 42 chr1 197682188 197682283 -44982070 + L3 LINE CR1 1480 1575 -2 2229 129 3 3 chr1 197682860 197683170 -44981183 + AluSx SINE Alu 1 310 -2 375 267 95 125 chr1 197683528 197683895 -44980458 - L2 LINE L2 -4 3268 2913 199 364 11 11 chr1 197684141 197684229 -44980124 - MIR SINE MIR -66 142 55 201 233 0 0 chr1 197684701 197684744 -44979609 + (GGCTG)n Simple_repeat Simple_repeat 3 45 0 721 244 116 0 chr1 197685244 197685416 -44978937 - MIR SINE MIR -30 232 41 281 272 99 0 chr1 197685695 197685776 -44978577 + MIR3 SINE MIR 69 157 -51 258 32 0 0 chr1 197687191 197687222 -44977131 + (CA)n Simple_repeat Simple_repeat 1 31 0 427 245 7 58 chr1 197687291 197687430 -44976923 + MER5A DNA MER1_type 55 186 -3 2558 38 0 0 chr1 197687507 197687833 -44976520 - AluY SINE Alu 0 311 1 387 246 92 14 chr1 197687848 197687990 -44976363 - MIR SINE MIR -29 233 81 1755 118 4 4 chr1 197689634 197689871 -44974482 + AluSx SINE Alu 55 291 -21 2036 162 10 0 chr1 197693191 197693500 -44970853 - AluJb SINE Alu 0 312 1 2210 98 39 0 chr1 197693675 197693960 -44970393 - AluSq SINE Alu -17 296 1 2567 66 3 0 chr1 197694829 197695134 -44969219 - AluY SINE Alu -5 306 1 281 160 0 20 chr1 197695106 197695156 -44969197 - AluSg/x SINE Alu -139 161 113 283 208 103 0 chr1 197695183 197695245 -44969108 + L2 LINE L2 3200 3267 -5 371 281 7 65 chr1 197695280 197695419 -44968934 + MIR SINE MIR 63 193 -69 260 263 68 75 chr1 197695578 197695711 -44968642 + L2 LINE L2 3170 3301 -12 22 35 0 0 chr1 197697079 197697108 -44967245 + GC_rich Low_complexity Low_complexity 1 29 0 228 304 255 10 chr1 197698341 197698443 -44965910 + MIR SINE MIR 3 129 -133 840 107 113 25 chr1 197698472 197698631 -44965722 - L1MD1 LINE L1 0 6242 6070 1900 129 0 11 chr1 197698641 197698950 -44965403 + AluSx SINE Alu 1 306 0 1606 157 4 0 chr1 197698978 197699233 -44965120 + AluSx SINE Alu 1 256 -56 345 270 32 81 chr1 197699731 197699930 -44964423 - MIR SINE MIR -9 199 9 322 291 0 0 chr1 197700477 197700563 -44963790 - L3b LINE CR1 -157 1426 1341 1506 170 24 17 chr1 197700624 197700912 -44963441 + AluJb SINE Alu 2 291 -21 708 187 0 16 chr1 197701098 197701221 -44963132 - FLAM_A SINE Alu -12 130 10 243 103 26 0 chr1 197701249 197701288 -44963065 - L1ME2 LINE L1 -10 6154 6115 536 276 101 32 chr1 197701663 197701880 -44962473 + MIR SINE MIR 25 256 -6 204 280 187 9 chr1 197702030 197702137 -44962216 - L3b LINE CR1 -198 1385 1260 196 297 47 0 chr1 197702526 197702590 -44961763 + L2 LINE L2 3206 3272 0 413 294 6 49 chr1 197702796 197702959 -44961394 + L3b LINE CR1 1290 1445 -138 184 313 98 18 chr1 197703068 197703180 -44961173 + MIR3 SINE MIR 81 201 -7 339 222 0 0 chr1 197703978 197704059 -44960294 + (TG)n Simple_repeat Simple_repeat 1 81 0 180 0 0 0 chr1 197704788 197704808 -44959545 + (A)n Simple_repeat Simple_repeat 1 20 0 2370 74 0 0 chr1 197704822 197705118 -44959235 + AluSp SINE Alu 1 296 -17 213 39 0 0 chr1 197705562 197705588 -44958765 + (CA)n Simple_repeat Simple_repeat 2 27 0 2053 153 12 12 chr1 197706325 197706666 -44957687 + MER58B DNA MER1_type 1 341 0 912 151 54 0 chr1 197706711 197706877 -44957476 - AluJb SINE Alu -2 310 136 310 290 117 48 chr1 197706960 197707191 -44957162 - MIR SINE MIR -6 256 10 184 359 16 0 chr1 197707871 197707935 -44956418 + L2 LINE L2 3234 3298 -15 258 81 0 0 chr1 197707937 197707974 -44956379 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 329 331 31 8 chr1 197708153 197708280 -44956073 - MIR SINE MIR -58 150 21 654 277 56 39 chr1 197708741 197708972 -44955381 - MIR SINE MIR 0 262 28 240 324 28 84 chr1 197708979 197709121 -44955232 + L2 LINE L2 3123 3256 -16 1277 177 11 23 chr1 197709124 197709390 -44954963 - L1PA16 LINE L1 -13 6153 5891 554 150 280 6 chr1 197710837 197710998 -44953355 + MIR SINE MIR 35 235 -27 229 299 26 13 chr1 197711023 197711100 -44953253 + MIR SINE MIR 104 181 -81 430 142 174 25 chr1 197711100 197711215 -44953138 + L1ME2 LINE L1 6059 6162 -2 1702 164 49 3 chr1 197711358 197711645 -44952708 + AluJb SINE Alu 2 301 -11 213 39 0 0 chr1 197712102 197712128 -44952225 + (TG)n Simple_repeat Simple_repeat 1 26 0 2469 54 0 13 chr1 197712469 197712782 -44951571 + AluY SINE Alu 1 309 -2 26 30 0 0 chr1 197713903 197713936 -44950417 + AT_rich Low_complexity Low_complexity 1 33 0 274 183 0 42 chr1 197714549 197714620 -44949733 - MER53 DNA DNA 0 189 122 815 144 0 0 chr1 197714703 197714828 -44949525 - FLAM_C SINE Alu -18 125 1 185 316 86 33 chr1 197714930 197714984 -44949369 - L2 LINE L2 -473 2841 2791 1502 164 22 75 chr1 197714984 197715302 -44949051 + AluJo SINE Alu 1 301 -1 185 316 86 33 chr1 197715302 197715399 -44948954 - L2 LINE L2 -523 2791 2682 376 354 0 0 chr1 197715469 197715565 -44948788 - L2 LINE L2 -19 3253 3158 734 161 7 7 chr1 197715942 197716085 -44948268 + L1M4 LINE L1 5000 5142 -1004 511 121 66 0 chr1 197716079 197716170 -44948183 - L1MB5 LINE L1 -326 5848 5752 * 779 140 35 7 chr1 197716170 197716312 -44948041 + L1MB8 LINE L1 6025 6171 -7 720 270 92 5 chr1 197716323 197716519 -44947834 + MIR SINE MIR 20 232 -30 734 101 0 0 chr1 197716540 197716639 -44947714 - AluJ/FLAM SINE Alu -212 100 2 2073 118 3 0 chr1 197717391 197717698 -44946655 - AluSq SINE Alu 0 308 1 2004 125 0 17 chr1 197717728 197718025 -44946328 - AluSx SINE Alu -20 292 1 1962 91 0 4 chr1 197718095 197718359 -44945994 - AluSg1 SINE Alu -46 263 1 1622 134 28 34 chr1 197718383 197718674 -44945679 - AluJb SINE Alu -11 301 13 285 302 85 28 chr1 197718686 197718792 -44945561 - MIR SINE MIR -117 145 34 645 177 8 8 chr1 197718946 197719070 -44945283 - MER5B DNA MER1_type -53 125 2 1993 135 0 3 chr1 197719805 197720109 -44944244 - AluSx SINE Alu -9 303 1 942 147 0 60 chr1 197720316 197720500 -44943853 - AluJo SINE Alu -137 175 3 27 49 0 0 chr1 197720500 197720541 -44943812 + AT_rich Low_complexity Low_complexity 1 41 0 278 338 39 45 chr1 197720547 197720701 -44943652 - L2 LINE L2 -14 3258 3106 395 295 175 6 chr1 197721000 197721166 -44943187 - MIR SINE MIR -34 228 35 1693 167 10 3 chr1 197721232 197721526 -44942827 + AluJb SINE Alu 1 296 -16 985 226 60 96 chr1 197721617 197721851 -44942502 - LTR16A1 LTR ERVL 0 457 216 2024 121 0 0 chr1 197721851 197722171 -44942182 - AluSx SINE Alu 0 320 1 985 226 60 96 chr1 197722171 197722192 -44942161 - LTR16A1 LTR ERVL -241 216 196 1604 175 0 7 chr1 197722192 197722472 -44941881 - AluJb SINE Alu -34 278 1 985 226 60 96 chr1 197722472 197722682 -44941671 - LTR16A1 LTR ERVL -261 196 6 448 283 69 14 chr1 197722699 197722844 -44941509 + L2 LINE L2 3114 3266 -6 1918 131 28 7 chr1 197723522 197723813 -44940540 - AluSx SINE Alu -15 297 1 496 188 165 45 chr1 197724311 197724487 -44939866 + Charlie8 DNA MER1_type 29 225 -2192 2301 73 3 0 chr1 197724622 197724911 -44939442 + AluSp SINE Alu 1 290 -23 1978 127 16 3 chr1 197724913 197725229 -44939124 - L1MB3 LINE L1 -11 6172 5853 265 45 159 23 chr1 197725251 197725295 -44939058 - MIR3 SINE MIR -43 165 116 3759 64 118 4 chr1 197725371 197725904 -44938449 - LTR61 LTR ERV1 -1 594 1 270 0 0 0 chr1 197726153 197726183 -44938170 + (A)n Simple_repeat Simple_repeat 1 30 0 2222 106 0 0 chr1 197728586 197728887 -44935466 + AluSx SINE Alu 3 303 -9 446 311 86 86 chr1 197729420 197729828 -44934525 + L2 LINE L2 2782 3185 -87 1305 202 61 11 chr1 197729846 197730123 -44934230 - AluJo SINE Alu -10 292 2 1791 178 3 0 chr1 197730403 197730712 -44933641 - AluJo SINE Alu -2 310 1 4385 189 35 17 chr1 197730712 197731548 -44932805 - MER21B LTR ERV1 -11 852 2 290 224 448 8 chr1 197731581 197731706 -44932647 - MER5A DNA MER1_type 0 189 10 1639 119 89 11 chr1 197731864 197732133 -44932220 + AluJb SINE Alu 5 294 -18 1982 92 34 17 chr1 197732624 197732916 -44931437 - AluSp SINE Alu -16 297 1 238 190 101 38 chr1 197732916 197732995 -44931358 + MLT1L LTR MaLR 514 597 -18 899 146 0 0 chr1 197733031 197733161 -44931192 - FLAM_C SINE Alu -1 132 3 24 0 0 0 chr1 197733170 197733194 -44931159 + AT_rich Low_complexity Low_complexity 1 24 0 323 319 111 15 chr1 197733194 197733329 -44931024 - L1ME4a LINE L1 -4 6117 5970 644 174 8 23 chr1 197733402 197733534 -44930819 + L1MB8 LINE L1 6031 6160 -18 587 163 0 0 chr1 197733566 197733652 -44930701 - FRAM SINE Alu -51 125 40 25 0 0 0 chr1 197733662 197733687 -44930666 + AT_rich Low_complexity Low_complexity 1 25 0 241 114 0 0 chr1 197733788 197733823 -44930530 - Alu SINE Alu -265 35 1 475 323 45 22 chr1 197733887 197734110 -44930243 - MIR SINE MIR -10 252 25 1869 134 0 45 chr1 197734973 197735160 -44929193 - AluJb SINE Alu -12 300 131 1387 137 218 8 chr1 197735160 197735408 -44928945 + AluJo SINE Alu 1 300 -2 1869 134 0 45 chr1 197735408 197735534 -44928819 - AluJb SINE Alu -181 131 1 1125 168 3 98 chr1 197736012 197736071 -44928282 - L1MA4 LINE L1 -11 6289 6226 1883 142 0 20 chr1 197736071 197736366 -44927987 - AluJo SINE Alu -23 289 1 1125 168 3 98 chr1 197736366 197736591 -44927762 - L1MA4 LINE L1 -74 6226 6032 2338 89 0 6 chr1 197736593 197736907 -44927446 - AluSx SINE Alu 0 312 1 227 272 175 19 chr1 197736996 197737099 -44927254 + MIR3 SINE MIR 40 158 -50 359 218 119 20 chr1 197737924 197738025 -44926328 - MIR SINE MIR -88 174 64 1767 149 34 17 chr1 197738178 197738474 -44925879 - AluSx SINE Alu -11 301 1 233 191 21 0 chr1 197738484 197738531 -44925822 - L2 LINE L2 0 3313 3266 2331 67 0 3 chr1 197739278 197739575 -44924778 - AluY SINE Alu -15 296 1 325 292 81 75 chr1 197739649 197739810 -44924543 + MER91B DNA MER1_type 25 186 -4 262 144 135 48 chr1 197739867 197739971 -44924382 - L1MC5 LINE L1 -20 7941 7829 21 0 0 0 chr1 197740239 197740260 -44924093 + AT_rich Low_complexity Low_complexity 1 21 0 788 235 99 25 chr1 197740838 197741081 -44923272 - MIR SINE MIR 0 262 2 1962 112 31 7 chr1 197741166 197741460 -44922893 - AluSc SINE Alu -8 301 1 628 287 25 0 chr1 197741460 197741617 -44922736 - MIR SINE MIR -68 194 34 2404 90 0 0 chr1 197742009 197742320 -44922033 - AluSx SINE Alu -1 311 1 667 272 196 14 chr1 197742971 197743046 -44921307 + L1M4 LINE L1 3859 3919 -2227 2158 109 0 0 chr1 197743046 197743348 -44921005 + AluSx SINE Alu 3 304 -8 667 272 196 14 chr1 197743348 197743827 -44920526 + L1M4 LINE L1 3919 4514 -1632 848 173 74 55 chr1 197743839 197744041 -44920312 + L1PA16 LINE L1 5941 6146 -20 1790 222 187 29 chr1 197744169 197744797 -44919556 + L1MDa LINE L1 38 565 -5975 2031 121 0 10 chr1 197744797 197745103 -44919250 + AluSx SINE Alu 1 303 -9 1790 222 187 29 chr1 197745103 197745312 -44919041 + L1MDa LINE L1 565 1327 -5213 1327 145 0 19 chr1 197745312 197745526 -44918827 + AluJo SINE Alu 86 295 -17 1834 144 75 29 chr1 197745526 197745902 -44918451 + L1MDa LINE L1 1318 1710 -4830 632 188 0 0 chr1 197745934 197746035 -44918318 + FLAM_A SINE Alu 1 101 -41 4266 151 30 67 chr1 197746036 197746365 -44917988 + L1MB5 LINE L1 5195 5535 -639 2146 113 0 0 chr1 197746365 197746666 -44917687 + AluSx SINE Alu 1 301 -11 4266 151 30 67 chr1 197746666 197747166 -44917187 + L1MB5 LINE L1 5535 5987 -187 216 0 0 0 chr1 197747166 197747190 -44917163 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 4266 151 30 67 chr1 197747190 197747327 -44917026 + L1MB5 LINE L1 5987 6128 -46 273 29 0 0 chr1 197747335 197747369 -44916984 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2098 115 0 0 chr1 197747369 197747656 -44916697 - AluSq SINE Alu -26 287 1 2109 96 0 0 chr1 197747692 197747972 -44916381 + AluSg SINE Alu 15 294 -16 507 222 82 93 chr1 197748014 197748284 -44916069 + L1MC4 LINE L1 7772 8038 -4 2229 113 3 0 chr1 197748284 197748595 -44915758 + AluSp SINE Alu 1 312 -1 1279 276 42 29 chr1 197748630 197748983 -44915370 + L1ME3A LINE L1 5162 5509 -661 1442 193 10 23 chr1 197748983 197749283 -44915070 - AluJo SINE Alu -16 296 1 1279 276 42 29 chr1 197749283 197749714 -44914639 + L1ME3A LINE L1 5509 5955 -215 433 281 41 8 chr1 197750242 197750363 -44913990 + MIR SINE MIR 20 144 -64 1002 180 95 0 chr1 197750384 197750573 -44913780 + AluJo SINE Alu 87 293 -19 2235 110 0 0 chr1 197751903 197752204 -44912149 + AluSx SINE Alu 1 301 -11 3391 221 90 24 chr1 197752251 197753036 -44911317 + L1MC4 LINE L1 6485 7349 -693 1576 155 45 7 chr1 197753036 197753327 -44911026 - AluJo SINE Alu -10 302 1 3391 221 90 24 chr1 197753327 197753518 -44910835 + L1MC4 LINE L1 7349 7526 -516 460 217 0 22 chr1 197753531 197753623 -44910730 + MER21B LTR ERV1 1 90 -773 45527 34 1 3 chr1 197753667 197759830 -44904523 - L1PA3 LINE L1 -1 6154 1 3144 228 55 38 chr1 197759832 197760019 -44904334 + MER21B LTR ERV1 17 199 -664 2067 133 0 0 chr1 197760019 197760319 -44904034 + AluSg SINE Alu 1 300 -10 3144 228 55 38 chr1 197760319 197760913 -44903440 + MER21B LTR ERV1 199 811 -52 1337 228 104 32 chr1 197760936 197761298 -44903055 + L1MC4 LINE L1 7533 7938 -104 198 0 0 0 chr1 197761298 197761320 -44903033 + (CA)n Simple_repeat Simple_repeat 2 23 0 1337 228 104 32 chr1 197761320 197761427 -44902926 + L1MC4 LINE L1 7938 8036 -6 1933 142 10 7 chr1 197761460 197761769 -44902584 - AluJb SINE Alu -2 310 1 1373 162 67 8 chr1 197761855 197762108 -44902245 - AluJb SINE Alu -44 268 1 840 229 108 14 chr1 197762361 197762575 -44901778 - MIR SINE MIR 0 262 29 1656 149 0 67 chr1 197762575 197762744 -44901609 - AluJb SINE Alu -17 295 155 2193 93 0 10 chr1 197762744 197763045 -44901308 - AluSq SINE Alu -15 298 1 1656 149 0 67 chr1 197763045 197763190 -44901163 - AluJb SINE Alu -157 155 2 862 199 0 6 chr1 197763681 197763862 -44900491 + FRAM SINE Alu 1 172 -4 700 170 15 26 chr1 197763865 197764132 -44900221 + GA-rich Low_complexity Low_complexity 1 263 0 950 116 11 22 chr1 197764139 197764255 -44900098 + (GGAA)n Simple_repeat Simple_repeat 2 117 -63 2186 58 41 3 chr1 197764255 197764546 -44899807 + AluY SINE Alu 1 302 -9 950 116 11 22 chr1 197764546 197764610 -44899743 + (GGAA)n Simple_repeat Simple_repeat 117 180 0 362 254 9 0 chr1 197764600 197764710 -44899643 + A-rich Low_complexity Low_complexity 4 114 0 * 389 293 57 16 chr1 197764985 197765108 -44899245 - MER94 DNA DNA -6 128 1 192 254 0 73 chr1 197766183 197766238 -44898115 - L2 LINE L2 -24 3289 3239 1704 179 0 3 chr1 197766246 197766554 -44897799 - AluJb SINE Alu -1 311 5 265 203 0 0 chr1 197766564 197766623 -44897730 - FAM SINE Alu 0 179 121 1522 137 16 24 chr1 197766625 197766874 -44897479 - AluSx SINE Alu -16 296 50 1630 151 0 55 chr1 197767270 197767404 -44896949 + AluJo SINE Alu 1 141 -171 1731 166 7 3 chr1 197767404 197767693 -44896660 - AluJo SINE Alu -22 290 1 1630 151 0 55 chr1 197767693 197767870 -44896483 + AluJo SINE Alu 141 295 -17 183 278 19 0 chr1 197768273 197768327 -44896026 - L2 LINE L2 -1015 2299 2245 289 347 126 10 chr1 197768563 197768762 -44895591 - MIR SINE MIR -15 247 26 217 254 119 0 chr1 197770865 197770932 -44893421 + MIR SINE MIR 4 78 -184 * 419 230 30 0 chr1 197770928 197771028 -44893325 - L2 LINE L2 -1 3271 3169 2062 84 0 14 chr1 197771495 197771779 -44892574 - AluSx SINE Alu -22 290 11 1712 145 10 10 chr1 197772445 197772735 -44891618 - AluSx SINE Alu -22 290 1 1557 114 9 9 chr1 197773006 197773234 -44891119 + AluSx SINE Alu 2 229 -83 799 193 105 55 chr1 197775766 197776004 -44888349 + MIR SINE MIR 13 262 0 238 324 152 65 chr1 197777384 197778011 -44886342 - L2 LINE L2 -5 3267 2502 330 291 47 24 chr1 197778513 197778640 -44885713 - L2 LINE L2 -18 3254 3125 255 339 63 8 chr1 197779471 197779598 -44884755 - L2 LINE L2 -219 3053 2920 507 286 71 55 chr1 197780006 197780244 -44884109 + MIR SINE MIR 10 251 -11 306 67 0 0 chr1 197780454 197780499 -44883854 + (GA)n Simple_repeat Simple_repeat 1 45 0 188 331 33 25 chr1 197780971 197781092 -44883261 - L2 LINE L2 -456 2858 2737 258 239 37 28 chr1 197781125 197781234 -44883119 - L1MC5 LINE L1 -38 7923 7814 243 293 90 30 chr1 197781234 197781367 -44882986 - L2 LINE L2 -566 2748 2608 599 324 70 16 chr1 197781371 197781627 -44882726 - L2 LINE L2 -1 3312 3043 364 290 49 77 chr1 197781663 197781949 -44882404 - L2 LINE L2 -661 2653 2376 23 0 0 0 chr1 197783769 197783792 -44880561 + GC_rich Low_complexity Low_complexity 1 23 0 196 333 0 0 chr1 197784216 197784261 -44880092 - L2 LINE L2 -17 3255 3211 412 292 65 36 chr1 197784335 197784503 -44879850 - MIR SINE MIR -16 246 74 2344 88 0 0 chr1 197784677 197784984 -44879369 - AluSc SINE Alu -2 307 1 231 287 0 23 chr1 197785105 197785192 -44879161 + GA-rich Low_complexity Low_complexity 2 86 0 1882 154 0 7 chr1 197785696 197786001 -44878352 + AluJb SINE Alu 1 303 -9 2011 114 14 0 chr1 197786150 197786440 -44877913 + AluSg SINE Alu 1 294 -16 277 317 20 10 chr1 197786444 197786545 -44877808 + L2 LINE L2 3149 3250 -22 220 254 119 0 chr1 197786697 197786756 -44877597 - L2 LINE L2 -7 3265 3200 1364 155 155 19 chr1 197787158 197787318 -44877035 - AluJo SINE Alu 0 302 165 221 0 35 0 chr1 197787318 197787347 -44877006 + (TA)n Simple_repeat Simple_repeat 2 31 0 1364 155 155 19 chr1 197787347 197787451 -44876902 - AluJo SINE Alu -137 165 2 198 71 0 0 chr1 197790273 197790301 -44874052 + (TGG)n Simple_repeat Simple_repeat 2 29 0 511 277 41 15 chr1 197790663 197790858 -44873495 - MIR3 SINE MIR -7 201 2 196 152 0 0 chr1 197791527 197791560 -44872793 - MIR SINE MIR -116 146 114 233 119 24 0 chr1 197792812 197792854 -44871499 + GA-rich Low_complexity Low_complexity 2 44 0 498 276 7 21 chr1 197795832 197795977 -44868376 + MIR3 SINE MIR 33 175 -33 182 91 30 0 chr1 197798142 197798175 -44866178 + CT-rich Low_complexity Low_complexity 4 37 0 821 279 57 12 chr1 197800084 197800328 -44864025 + MIR SINE MIR 2 256 -6 303 222 81 0 chr1 197801049 197801148 -44863205 - MIR3 SINE MIR -21 187 81 287 65 22 0 chr1 197802540 197802586 -44861767 + (CACAG)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr1 197803070 197803094 -44861259 + (TGGGGG)n Simple_repeat Simple_repeat 5 28 0 230 283 0 0 chr1 197803292 197803345 -44861008 + C-rich Low_complexity Low_complexity 3 55 0 274 226 32 0 chr1 197804791 197804853 -44859500 - MIR SINE MIR -105 157 94 283 240 106 161 chr1 197805371 197805625 -44858728 + L3 LINE CR1 1336 1575 -2 231 310 14 0 chr1 197807082 197807153 -44857200 - L2 LINE L2 -3 3310 3239 228 35 0 0 chr1 197807491 197807520 -44856833 + (TG)n Simple_repeat Simple_repeat 1 29 0 225 94 0 0 chr1 197808931 197808963 -44855390 + (TC)n Simple_repeat Simple_repeat 1 32 0 249 232 0 0 chr1 197809697 197809766 -44854587 + (CA)n Simple_repeat Simple_repeat 1 69 0 30 77 0 0 chr1 197809860 197809925 -44854428 + GC_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr1 197810015 197810044 -44854309 + GC_rich Low_complexity Low_complexity 1 29 0 427 339 71 25 chr1 197811060 197811385 -44852968 - L2 LINE L2 -3 3269 2930 302 286 105 0 chr1 197811848 197811953 -44852400 - MIR SINE MIR -55 207 92 347 284 29 0 chr1 197812268 197812370 -44851983 + MIR SINE MIR 99 203 -59 938 115 0 0 chr1 197813398 197813528 -44850825 + AluSq/x SINE Alu 1 130 -182 2183 100 30 0 chr1 197813549 197813850 -44850503 + AluSx SINE Alu 1 310 -2 1472 300 65 14 chr1 197814571 197814870 -44849483 + L2 LINE L2 1408 1690 -1624 2196 93 0 19 chr1 197814870 197815182 -44849171 + AluSg SINE Alu 1 306 -4 1472 300 65 14 chr1 197815182 197815539 -44848814 + L2 LINE L2 1690 2098 -1216 244 283 0 76 chr1 197815566 197815658 -44848695 + L2 LINE L2 2235 2319 -995 955 221 114 28 chr1 197815658 197815912 -44848441 - MLT1C LTR MaLR 0 467 192 1235 144 0 0 chr1 197815952 197816133 -44848220 - AluSp SINE Alu -1 312 132 2160 110 0 7 chr1 197816135 197816444 -44847909 - AluSq SINE Alu -6 307 1 748 130 162 7 chr1 197816447 197816601 -44847752 - MLT1C LTR MaLR -289 178 1 1554 279 105 17 chr1 197816601 197817408 -44846945 + L2 LINE L2 2315 3202 -111 2302 98 0 0 chr1 197817455 197817760 -44846593 - AluSc SINE Alu -4 305 1 21 36 0 0 chr1 197817769 197817797 -44846556 + AT_rich Low_complexity Low_complexity 1 28 0 2143 110 3 0 chr1 197817865 197818173 -44846180 - AluSg SINE Alu 0 310 2 288 236 0 67 chr1 197818315 197818404 -44845949 + L2 LINE L2 1334 1416 -1898 573 189 111 7 chr1 197818522 197818675 -44845678 + MIR SINE MIR 82 250 -12 383 231 38 94 chr1 197818698 197818858 -44845495 - MIR SINE MIR -79 183 33 1893 148 26 3 chr1 197819029 197819334 -44845019 - AluJb SINE Alu 0 312 1 307 306 12 0 chr1 197820156 197820241 -44844112 + MIR3 SINE MIR 116 201 -7 1922 138 7 0 chr1 197820365 197820662 -44843691 - AluSx SINE Alu -13 299 1 518 276 77 0 chr1 197820663 197820833 -44843520 - MIR SINE MIR -65 197 15 306 0 0 0 chr1 197820992 197821026 -44843327 + (TG)n Simple_repeat Simple_repeat 2 35 0 586 321 140 17 chr1 197821063 197821421 -44842932 + L3 LINE CR1 796 1197 -380 2132 130 7 0 chr1 197821423 197821730 -44842623 + AluSx SINE Alu 1 309 -3 373 262 113 0 chr1 197821734 197821875 -44842478 + MIR SINE MIR 85 241 -21 188 314 20 0 chr1 197822481 197822532 -44841821 - MIR3 SINE MIR -10 198 147 454 265 61 28 chr1 197822541 197822722 -44841631 - MER5A DNA MER1_type -2 187 1 233 289 0 0 chr1 197823659 197823735 -44840618 - HsTC2 DNA Tc2 -1818 80 5 1990 122 3 0 chr1 197823736 197824052 -44840301 + AluSx SINE Alu 1 317 0 2331 62 14 0 chr1 197824120 197824409 -44839944 - AluY SINE Alu -18 293 1 210 384 58 0 chr1 197824536 197824674 -44839679 - MIR3 SINE MIR -26 182 37 2119 142 71 12 chr1 197824690 197825053 -44839300 + L1MB5 LINE L1 5735 6126 -48 2135 110 10 0 chr1 197825053 197825352 -44839001 + AluSg SINE Alu 1 302 -8 2119 142 71 12 chr1 197825352 197825397 -44838956 + L1MB5 LINE L1 6126 6167 -7 903 86 26 0 chr1 197825399 197825550 -44838803 + (GGAA)n Simple_repeat Simple_repeat 3 157 0 207 340 19 10 chr1 197825768 197825871 -44838482 + GA-rich Low_complexity Low_complexity 5 108 0 450 294 45 77 chr1 197826424 197826710 -44837643 + L2 LINE L2 3026 3302 -11 703 297 60 59 chr1 197826834 197827112 -44837241 + L2 LINE L2 2702 2978 -335 597 80 0 0 chr1 197827112 197827187 -44837166 + tRNA-Lys-AAA tRNA tRNA 1 75 -1 2015 105 24 7 chr1 197827194 197827489 -44836864 + AluSg SINE Alu 1 300 -10 703 297 60 59 chr1 197827489 197827722 -44836631 + L2 LINE L2 2983 3224 -89 288 301 106 60 chr1 197827733 197827862 -44836491 + LTR16C LTR ERVL 2 145 -346 2258 118 35 32 chr1 197827862 197828236 -44836117 + THE1C LTR MaLR 1 375 0 288 301 106 60 chr1 197828236 197828305 -44836048 + LTR16C LTR ERVL 145 209 -282 1011 265 3 58 chr1 197828486 197828745 -44835608 + LTR16C LTR ERVL 198 439 -52 4038 136 25 8 chr1 197828745 197829398 -44834955 + L1MB7 LINE L1 5516 6179 -5 1011 265 3 58 chr1 197829398 197829447 -44834906 + LTR16C LTR ERVL 439 489 -2 294 184 0 105 chr1 197829448 197829524 -44834829 + L2 LINE L2 3246 3313 0 520 145 29 33 chr1 197829737 197829984 -44834369 + (TG)n Simple_repeat Simple_repeat 1 245 0 339 257 18 18 chr1 197831028 197831137 -44833216 - L2 LINE L2 -6 3266 3158 569 277 102 11 chr1 197831214 197831391 -44832962 - MIR SINE MIR -37 225 33 1649 112 0 4 chr1 197831404 197831664 -44832689 - AluSx SINE Alu 0 309 51 1881 133 4 0 chr1 197831999 197832277 -44832076 - AluJo SINE Alu -22 290 12 312 302 42 0 chr1 197833113 197833209 -44831144 + MIR3 SINE MIR 5 104 -104 227 341 134 12 chr1 197833756 197833920 -44830433 + L3b LINE CR1 1344 1527 -56 1907 139 0 4 chr1 197834172 197834452 -44829901 + AluJb SINE Alu 1 279 -33 275 312 161 20 chr1 197834611 197834810 -44829543 - MLT1L LTR MaLR -6 609 383 423 0 0 0 chr1 197835338 197835385 -44828968 + (CA)n Simple_repeat Simple_repeat 2 48 0 2246 100 3 0 chr1 197836273 197836582 -44827771 + AluSp SINE Alu 1 310 -3 1131 119 0 0 chr1 197836582 197836758 -44827595 + (GGAGAA)n Simple_repeat Simple_repeat 3 178 0 388 305 23 45 chr1 197836771 197836969 -44827384 + MIR SINE MIR 42 233 -29 254 308 75 0 chr1 197837372 197837479 -44826874 - MIR SINE MIR -64 198 84 910 109 0 36 chr1 197837597 197837734 -44826619 + FLAM_C SINE Alu 2 133 0 1635 170 19 13 chr1 197837892 197838204 -44826149 - MER58B DNA MER1_type -3 338 25 2147 112 0 13 chr1 197838541 197838846 -44825507 + AluSx SINE Alu 10 310 -2 215 318 14 10 chr1 197839025 197839125 -44825228 + MIR SINE MIR 2 104 -104 1981 124 13 3 chr1 197839198 197839496 -44824857 + AluSx SINE Alu 1 301 -11 1225 134 139 0 chr1 197839522 197839724 -44824629 + MER30 DNA MER1_type 1 230 0 1562 184 0 38 chr1 197840050 197840366 -44823987 + AluJb SINE Alu 1 304 -8 864 276 9 0 chr1 197840433 197840647 -44823706 + MIR SINE MIR 45 260 -2 339 25 0 0 chr1 197840952 197840992 -44823361 + (TG)n Simple_repeat Simple_repeat 1 40 0 319 267 162 9 chr1 197841062 197841167 -44823186 + MIR3 SINE MIR 8 128 -80 677 206 16 90 chr1 197842084 197842273 -44822080 - MER45A DNA AcHobo -3 175 1 212 270 122 70 chr1 197842278 197842342 -44822011 - MIR3 SINE MIR -6 256 197 1867 151 0 0 chr1 197842342 197842626 -44821727 - AluJb SINE Alu -20 292 9 212 270 122 70 chr1 197842626 197842809 -44821544 - MIR3 SINE MIR -65 197 3 465 215 164 16 chr1 197842973 197843164 -44821189 + MIR SINE MIR 37 248 -14 1016 203 0 33 chr1 197845924 197846103 -44818250 - AluJ SINE Alu 0 312 140 2037 129 7 0 chr1 197846103 197846398 -44817955 - AluSx SINE Alu -15 297 1 1016 203 0 33 chr1 197846398 197846430 -44817923 - AluJ SINE Alu -172 140 108 786 131 0 0 chr1 197846471 197846578 -44817775 - AluJ SINE Alu -204 108 2 590 282 40 0 chr1 197847647 197847821 -44816532 - MIR SINE MIR 0 262 82 573 15 0 0 chr1 197847877 197847943 -44816410 + (TC)n Simple_repeat Simple_repeat 1 66 0 1874 146 0 4 chr1 197847943 197848224 -44816129 - AluSx SINE Alu -32 280 1 209 220 0 20 chr1 197848481 197848531 -44815822 + GA-rich Low_complexity Low_complexity 2 50 0 1972 127 4 0 chr1 197848568 197848836 -44815517 + AluSx SINE Alu 6 274 -38 188 297 41 28 chr1 197849199 197849344 -44815009 + L2 LINE L2 1755 1901 -1413 314 190 35 0 chr1 197849374 197849432 -44814921 + MER81 DNA DNA 55 114 0 1951 106 15 4 chr1 197849626 197849899 -44814454 - MER1A DNA MER1_type 0 529 254 1321 135 106 5 chr1 197850001 197850209 -44814144 - MER1A DNA MER1_type -298 229 1 385 327 82 63 chr1 197850222 197850647 -44813706 - L2 LINE L2 -25 3247 2815 234 0 0 0 chr1 197851609 197851635 -44812718 + (TG)n Simple_repeat Simple_repeat 2 27 0 203 266 62 0 chr1 197851796 197851860 -44812493 + (CATG)n Simple_repeat Simple_repeat 3 70 0 266 285 57 41 chr1 197852293 197852416 -44811937 - MIR SINE MIR -41 221 97 456 202 113 0 chr1 197853122 197853246 -44811107 - MIR SINE MIR -56 206 69 596 272 93 45 chr1 197853782 197854028 -44810325 + L2 LINE L2 3015 3272 0 366 307 110 32 chr1 197854034 197854252 -44810101 - MIR SINE MIR 0 262 28 280 335 126 19 chr1 197854610 197854825 -44809528 + L2 LINE L2 3025 3262 -10 413 305 92 17 chr1 197855238 197855412 -44808941 - MIR3 SINE MIR -3 205 19 332 283 20 10 chr1 197855646 197855745 -44808608 - L2 LINE L2 -6 3307 3208 1712 229 68 18 chr1 197856970 197857410 -44806943 - MLT1C LTR MaLR 0 467 6 32 75 0 0 chr1 197859994 197860061 -44804292 + AT_rich Low_complexity Low_complexity 1 67 0 222 284 11 45 chr1 197860728 197860816 -44803537 + MIR SINE MIR 151 235 -27 190 283 192 17 chr1 197861017 197861137 -44803216 - L2 LINE L2 -2402 912 772 261 0 0 0 chr1 197861308 197861337 -44803016 + (CAA)n Simple_repeat Simple_repeat 2 30 0 194 307 157 54 chr1 197861348 197861514 -44802839 - L2 LINE L2 -2824 490 308 578 185 37 15 chr1 197863119 197863273 -44801080 - L1 LINE L1 -1889 4257 4101 194 189 151 19 chr1 197864400 197864453 -44799900 - MER5A DNA MER1_type -10 179 120 574 250 151 52 chr1 197865604 197865928 -44798425 + MLT1J2 LTR MaLR 72 427 -23 302 289 56 38 chr1 197865968 197866166 -44798187 - MIR SINE MIR -7 255 15 2450 204 18 63 chr1 197867478 197868080 -44796273 + LTR9 LTR ERV1 38 612 0 281 26 0 26 chr1 197868099 197868138 -44796215 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 539 357 96 0 chr1 197868972 197869221 -44795132 - MER115 DNA AcHobo -367 326 54 2475 56 0 0 chr1 197870175 197870462 -44793891 - AluY SINE Alu -24 287 1 338 330 64 12 chr1 197870511 197870684 -44793669 + MIR SINE MIR 66 247 -15 22 88 0 0 chr1 197870916 197870973 -44793380 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr1 197872833 197872875 -44791478 + AT_rich Low_complexity Low_complexity 1 42 0 540 307 119 59 chr1 197872989 197873478 -44790875 - MLT1H1 LTR MaLR 0 555 38 30 27 0 0 chr1 197873621 197873658 -44790695 + AT_rich Low_complexity Low_complexity 1 37 0 1604 188 9 32 chr1 197873660 197874001 -44790352 - L1MB3 LINE L1 -10 6173 5841 2192 92 10 20 chr1 197874197 197874500 -44789853 + AluSg SINE Alu 1 300 -10 1800 164 10 0 chr1 197874510 197874803 -44789550 + AluJo SINE Alu 3 298 -14 244 360 81 12 chr1 197874820 197874906 -44789447 - L2 LINE L2 -47 3225 3134 9284 188 42 17 chr1 197875290 197878044 -44786309 - L1MA9 LINE L1 -377 5935 3114 27 29 0 0 chr1 197878644 197878678 -44785675 + AT_rich Low_complexity Low_complexity 1 34 0 259 319 74 15 chr1 197878735 197878870 -44785483 - MIR SINE MIR -29 233 91 236 208 92 138 chr1 197878992 197879122 -44785231 - MER117 DNA MER1_type -1 196 73 2074 115 45 3 chr1 197879127 197879415 -44784938 + AluSx SINE Alu 1 300 -12 276 329 58 7 chr1 197880152 197880289 -44784064 + MIR SINE MIR 12 155 -107 25 0 0 0 chr1 197880362 197880387 -44783966 + AT_rich Low_complexity Low_complexity 1 25 0 269 270 56 0 chr1 197881151 197881240 -44783113 - MIR SINE MIR -16 246 153 746 309 49 13 chr1 197881456 197881763 -44782590 + MER46C DNA MER2_type 17 334 -4 320 271 24 12 chr1 197881763 197881848 -44782505 - MIR SINE MIR -101 161 76 1891 142 22 0 chr1 197881895 197882194 -44782159 + AluSx SINE Alu 1 305 0 1914 153 0 0 chr1 197883003 197883285 -44781068 - AluSx SINE Alu -30 282 1 374 57 19 0 chr1 197883519 197883572 -44780781 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 293 122 54 0 chr1 197884591 197884665 -44779688 + (TA)n Simple_repeat Simple_repeat 2 79 0 494 254 57 62 chr1 197885255 197885464 -44778889 - MLT1K LTR MaLR -158 430 223 2267 168 89 2 chr1 197885508 197885902 -44778451 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr1 197886488 197886509 -44777844 + AT_rich Low_complexity Low_complexity 1 21 0 2037 123 0 4 chr1 197886798 197887075 -44777278 + AluSg SINE Alu 5 280 -30 364 286 76 12 chr1 197887128 197887299 -44777054 + MIR SINE MIR 81 262 0 459 98 74 0 chr1 197888842 197889005 -44775348 + (TA)n Simple_repeat Simple_repeat 1 175 0 772 253 7 7 chr1 197889111 197889265 -44775088 - AluJo SINE Alu -157 155 2 1536 123 8 0 chr1 197889268 197889503 -44774850 - L1MA5A LINE L1 -2 6295 6059 272 180 0 0 chr1 197889977 197890027 -44774326 - L1MA5 LINE L1 0 6300 6251 455 266 203 10 chr1 197890199 197890406 -44773947 + MIR SINE MIR 7 253 -9 198 246 0 43 chr1 197890646 197890715 -44773638 - L2 LINE L2 -335 2937 2872 320 330 138 59 chr1 197890791 197891263 -44773090 - L2 LINE L2 -571 2743 2235 2158 148 107 18 chr1 197891547 197891938 -44772415 + MSTA LTR MaLR 1 426 -2 202 174 43 0 chr1 197893488 197893534 -44770819 + CT-rich Low_complexity Low_complexity 3 50 0 568 292 59 9 chr1 197893561 197893780 -44770573 - MIR SINE MIR -7 255 26 1794 178 31 8 chr1 197894065 197894420 -44769933 + L1MA6 LINE L1 5938 6300 0 570 271 166 42 chr1 197895964 197896235 -44768118 - L2 LINE L2 -11 3302 2961 1963 147 23 0 chr1 197896235 197896535 -44767818 + AluJo SINE Alu 1 307 -5 570 271 166 42 chr1 197896535 197896673 -44767680 - L2 LINE L2 -352 2961 2842 196 269 30 30 chr1 197896698 197896765 -44767588 + MER5B DNA MER1_type 20 86 -92 181 263 0 0 chr1 197896765 197896803 -44767550 - MER5B DNA MER1_type -139 39 2 206 234 78 0 chr1 197896806 197896870 -44767483 - L2 LINE L2 -502 2812 2744 588 260 60 90 chr1 197898129 197898494 -44765859 + L2 LINE L2 2959 3312 -1 298 298 60 36 chr1 197898754 197899002 -44765351 - L1 LINE L1 -1087 5059 4806 1608 205 43 0 chr1 197899109 197899436 -44764917 + L1 LINE L1 3545 3885 -2261 23 0 0 0 chr1 197899500 197899523 -44764830 + AT_rich Low_complexity Low_complexity 1 23 0 1363 215 44 49 chr1 197899637 197900022 -44764331 - MLT2D LTR ERVL 0 414 33 2064 142 7 0 chr1 197903932 197904234 -44760119 - AluJb SINE Alu -8 304 1 188 279 76 13 chr1 197904317 197904396 -44759957 - MIR SINE MIR -58 150 67 210 182 15 76 chr1 197905516 197905582 -44758771 + L2 LINE L2 3029 3090 -182 833 190 15 54 chr1 197905763 197905968 -44758385 - MIR SINE MIR -21 241 45 234 135 0 122 chr1 197907393 197907467 -44756886 + MIR SINE MIR 81 145 -63 536 188 139 7 chr1 197908282 197908426 -44755927 - MIR SINE MIR -87 175 13 349 254 195 43 chr1 197908946 197909081 -44755272 + MIR SINE MIR 46 218 -44 2446 60 19 29 chr1 197909081 197909395 -44754958 + AluY SINE Alu 1 311 0 349 254 195 43 chr1 197909395 197909444 -44754909 + MIR SINE MIR 218 258 -4 686 216 65 40 chr1 197910661 197910860 -44753493 + MIR SINE MIR 15 218 -44 500 271 7 13 chr1 197911092 197911247 -44753106 + MIR SINE MIR 31 184 -78 1154 201 7 26 chr1 197911351 197911624 -44752729 + L1MCb LINE L1 701 968 -5077 21 0 0 0 chr1 197912442 197912463 -44751890 + AT_rich Low_complexity Low_complexity 1 21 0 308 329 129 6 chr1 197913675 197913845 -44750508 + MIR SINE MIR 1 191 -71 1310 205 40 46 chr1 197914132 197914435 -44749918 - AluJb SINE Alu -11 301 1 572 287 71 45 chr1 197915625 197916005 -44748348 + MER93a LTR ERV1 1 390 -12 590 270 107 52 chr1 197916012 197916245 -44748108 + MER93a-int LTR ERV1 3 248 -7289 400 291 0 28 chr1 197916898 197917039 -44747314 + MER34C LTR ERV1 294 430 -155 486 201 5 38 chr1 197917116 197917300 -44747053 + GA-rich Low_complexity Low_complexity 3 180 0 181 229 0 0 chr1 197917508 197917556 -44746797 - L2 LINE L2 -18 3254 3207 189 346 71 19 chr1 197917581 197917850 -44746503 + L2 LINE L2 2038 2320 -994 2082 103 39 3 chr1 197917885 197918167 -44746186 - AluSx SINE Alu -20 292 1 499 241 44 15 chr1 197918288 197918425 -44745928 + L1ME4a LINE L1 5977 6117 -4 1592 200 36 6 chr1 197918522 197918852 -44745501 - MER58B DNA MER1_type 0 341 2 339 314 29 0 chr1 197919127 197919264 -44745089 - MIR3 SINE MIR -30 178 38 2256 111 0 0 chr1 197919843 197920141 -44744212 - AluSx SINE Alu -14 298 1 393 268 108 13 chr1 197920330 197920487 -44743866 - MIR SINE MIR -65 197 26 207 0 0 0 chr1 197920785 197920808 -44743545 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2156 91 0 0 chr1 197920809 197921072 -44743281 - AluSx SINE Alu -49 263 1 1721 116 12 0 chr1 197921087 197921328 -44743025 - AluJo SINE Alu -20 292 49 31948 67 12 3 chr1 197921942 197926104 -44738249 + L1P LINE L1 579 4778 -1368 1201 205 40 21 chr1 197928513 197928847 -44735506 + MLT1B LTR MaLR 4 390 0 1461 184 13 41 chr1 197930638 197930954 -44733399 + AluSx SINE Alu 3 309 -3 861 208 0 6 chr1 197931175 197931343 -44733010 - Tigger1 DNA MER2_type 0 2418 2252 2137 142 12 6 chr1 197931374 197931718 -44732635 - Tigger1 DNA MER2_type -1359 1059 714 3536 139 34 4 chr1 197931855 197932407 -44731946 - Tigger1 DNA MER2_type -1737 681 113 6289 48 4 0 chr1 197932407 197933758 -44730595 + L1PA5 LINE L1 4652 6005 -149 732 219 41 12 chr1 197934288 197934457 -44729896 + MIR SINE MIR 25 198 -64 2432 95 0 0 chr1 197934461 197934766 -44729587 + AluSx SINE Alu 1 305 -7 2032 127 10 20 chr1 197935507 197935807 -44728546 - AluSx SINE Alu -13 299 3 584 221 67 98 chr1 197935964 197936280 -44728073 - HAL1 LINE L1 -1385 1122 817 263 200 0 0 chr1 197936538 197936583 -44727770 + L2 LINE L2 3251 3295 -18 342 306 78 0 chr1 197936932 197937112 -44727241 + L2 LINE L2 3120 3313 0 1095 107 0 0 chr1 197938450 197938599 -44725754 + L1PA10 LINE L1 5999 6147 -21 23 68 0 0 chr1 197938921 197938965 -44725388 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr1 197939114 197939146 -44725207 + AT_rich Low_complexity Low_complexity 1 32 0 42 36 0 0 chr1 197939582 197939638 -44724715 + AT_rich Low_complexity Low_complexity 1 56 0 5799 194 98 69 chr1 197939687 197940257 -44724096 - L1MC3 LINE L1 -8 7777 7225 291 273 0 0 chr1 197940257 197940334 -44724019 - MLT1F1 LTR MaLR -456 111 35 5799 194 98 69 chr1 197940334 197941494 -44722859 - L1MC3 LINE L1 -560 7225 5919 257 254 72 98 chr1 197942180 197942444 -44721909 - L2 LINE L2 -25 3247 2991 229 343 186 33 chr1 197942876 197943275 -44721078 - L2 LINE L2 -1 3271 2812 2252 116 0 0 chr1 197943338 197943641 -44720712 - AluSx SINE Alu -9 303 1 212 203 188 0 chr1 197943736 197943805 -44720548 - MIR SINE MIR -111 151 70 186 200 29 0 chr1 197944681 197944716 -44719637 + L2 LINE L2 3211 3246 -26 2026 103 0 0 chr1 197944968 197945239 -44719114 + AluSc SINE Alu 35 305 -4 2246 217 26 13 chr1 197945318 197945853 -44718500 + L1MCa LINE L1 1 542 -5884 251 260 41 0 chr1 197945884 197945957 -44718396 + L1MCa LINE L1 2088 2163 -4263 * 662 227 74 46 chr1 197945956 197946497 -44717856 + L1MCa LINE L1 2116 2684 -3742 668 193 80 0 chr1 197946528 197946715 -44717638 + L1M4 LINE L1 4487 4688 -1458 751 194 32 11 chr1 197946716 197946902 -44717451 + L1MC2 LINE L1 6149 6338 -6 282 108 40 0 chr1 197946943 197947017 -44717336 + (TA)n Simple_repeat Simple_repeat 2 78 0 21 57 0 0 chr1 197947143 197947178 -44717175 + AT_rich Low_complexity Low_complexity 1 35 0 1486 155 174 35 chr1 197947311 197947685 -44716668 - MSTB LTR MaLR 0 426 1 1409 258 7 44 chr1 197948362 197948487 -44715866 + L1MC2 LINE L1 10 138 -6288 1710 152 58 36 chr1 197948487 197948817 -44715536 - MER1B DNA MER1_type 0 337 1 1409 258 7 44 chr1 197948817 197949098 -44715255 + L1MC2 LINE L1 138 401 -6025 600 50 0 0 chr1 197949098 197949178 -44715175 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 899 452 26 4 chr1 197949178 197949450 -44714903 - AluSc SINE Alu -31 278 1 3221 75 9 6 chr1 197949451 197950059 -44714294 - L1P3 LINE L1 -465 5689 5078 357 233 34 51 chr1 197950081 197950257 -44714096 + L1MC2 LINE L1 3150 3322 -3104 5240 216 87 25 chr1 197950259 197950422 -44713931 + L1MC2 LINE L1 3460 3611 -3013 2079 125 4 0 chr1 197950422 197950734 -44713619 - AluSx SINE Alu 0 313 1 5240 216 87 25 chr1 197950734 197953536 -44710817 + L1MC2 LINE L1 3611 6623 -1 363 341 77 40 chr1 197953964 197954299 -44710054 + L2 LINE L2 2778 3120 -193 875 183 137 11 chr1 197954299 197954474 -44709879 + MSTB LTR MaLR 1 197 -229 531 135 0 0 chr1 197954480 197954578 -44709775 + L1PA8A LINE L1 5392 5489 -652 196 307 69 30 chr1 197954831 197954932 -44709421 - MIR SINE MIR -44 218 114 459 329 26 0 chr1 197955199 197955354 -44708999 + LTR33 LTR ERVL 3 161 -360 221 179 0 0 chr1 197955745 197955784 -44708569 + T-rich Low_complexity Low_complexity 1 39 0 601 352 98 20 chr1 197956091 197956747 -44707606 + L2 LINE L2 1774 2480 -834 994 217 14 14 chr1 197956757 197956974 -44707379 - U3 snRNA snRNA 0 217 1 228 319 14 0 chr1 197957374 197957443 -44706910 - L1ME2 LINE L1 -87 6077 6008 191 300 69 46 chr1 197957508 197957638 -44706715 + L2 LINE L2 3181 3313 0 538 215 0 12 chr1 197958068 197958231 -44706122 + CT-rich Low_complexity Low_complexity 2 162 0 1767 166 3 32 chr1 197958232 197958546 -44705807 - AluJo SINE Alu -7 305 1 29 0 0 0 chr1 197958678 197958707 -44705646 + AT_rich Low_complexity Low_complexity 1 29 0 364 262 101 40 chr1 197958874 197959023 -44705330 - MIR SINE MIR -56 206 49 4713 102 7 1 chr1 197960003 197960689 -44703664 - L1PB2 LINE L1 -2 6149 5460 239 269 37 90 chr1 197961066 197961200 -44703153 - MIR3 SINE MIR -5 203 77 947 269 87 39 chr1 197962239 197962652 -44701701 + LTR16A LTR ERVL 18 450 0 1933 140 10 7 chr1 197962999 197963306 -44701047 + AluSq SINE Alu 5 312 -1 2421 136 36 45 chr1 197963588 197964058 -44700295 + L1MC1 LINE L1 5857 6322 -11 216 67 0 0 chr1 197964061 197964091 -44700262 + (CA)n Simple_repeat Simple_repeat 1 30 0 216 133 50 0 chr1 197964379 197964439 -44699914 + (TA)n Simple_repeat Simple_repeat 2 64 0 22 56 0 0 chr1 197965600 197965636 -44698717 + AT_rich Low_complexity Low_complexity 1 36 0 6546 179 34 4 chr1 197965774 197967072 -44697281 + L1PA13 LINE L1 3163 4499 -1647 5038 101 65 21 chr1 197967085 197967993 -44696360 + L1PA13 LINE L1 5214 6159 -4 332 356 59 0 chr1 197968431 197968566 -44695787 + MIR3 SINE MIR 5 147 -61 2837 144 40 6 chr1 197968576 197969056 -44695297 - Tigger1 DNA MER2_type -3 2415 1920 * 4338 133 23 27 chr1 197969035 197969764 -44694589 - Tigger1 DNA MER2_type -1501 917 192 2123 125 7 0 chr1 197970032 197970337 -44694016 + AluSq SINE Alu 1 307 -6 770 203 0 97 chr1 197970338 197970511 -44693842 - Tigger1 DNA MER2_type -2219 199 50 321 26 0 0 chr1 197970511 197970549 -44693804 + (TA)n Simple_repeat Simple_repeat 2 39 0 770 203 0 97 chr1 197970549 197970592 -44693761 - Tigger1 DNA MER2_type -2368 50 4 330 316 158 27 chr1 197972163 197972492 -44691861 + HAL1 LINE L1 817 1188 -1319 387 249 35 81 chr1 197972697 197972894 -44691459 + HAL1 LINE L1 1421 1608 -899 1725 182 38 58 chr1 197972981 197973377 -44690976 + MLT1B LTR MaLR 1 388 -2 1970 151 7 0 chr1 197973843 197974141 -44690212 + AluSq SINE Alu 1 300 -13 2040 127 20 6 chr1 197974410 197974757 -44689596 - LTR56 LTR ERV1 0 445 94 1482 214 3 34 chr1 197974757 197975079 -44689274 + AluJb SINE Alu 1 312 0 556 216 10 0 chr1 197975079 197975181 -44689172 + AluJb SINE Alu 133 235 -77 431 188 20 20 chr1 197975189 197975290 -44689063 - LTR56 LTR ERV1 -344 101 1 258 362 11 6 chr1 197975365 197975542 -44688811 + L1M4 LINE L1 2384 2561 -3585 40 59 0 0 chr1 197975877 197975945 -44688408 + AT_rich Low_complexity Low_complexity 1 68 0 830 148 0 16 chr1 197977365 197977493 -44686860 - FLAM_C SINE Alu -15 128 3 542 125 0 0 chr1 197978324 197978404 -44685949 + AluJb SINE Alu 40 119 -193 30 0 0 0 chr1 197978510 197978540 -44685813 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr1 197978604 197978638 -44685715 + AT_rich Low_complexity Low_complexity 1 34 0 34 0 0 0 chr1 197979020 197979054 -44685299 + AT_rich Low_complexity Low_complexity 1 34 0 568 309 77 9 chr1 197979577 197979797 -44684556 + MIR SINE MIR 2 236 -26 792 143 41 7 chr1 197981044 197981191 -44683162 + MLT1A1 LTR MaLR 1 152 -213 243 232 259 9 chr1 197981318 197981430 -44682923 - L2 LINE L2 -228 3085 2946 838 187 171 0 chr1 197981435 197981622 -44682731 + MLT1A1 LTR MaLR 147 365 0 331 357 91 32 chr1 197981644 197982035 -44682318 + L2 LINE L2 2640 3083 -230 181 0 69 0 chr1 197982175 197982204 -44682149 + (TAATG)n Simple_repeat Simple_repeat 5 35 0 558 320 93 66 chr1 197982341 197982516 -44681837 - LTR33A LTR ERVL -44 479 310 465 46 0 0 chr1 197982516 197982581 -44681772 + L1PA6 LINE L1 6090 6154 0 558 320 93 66 chr1 197982581 197982814 -44681539 - LTR33A LTR ERVL -213 310 60 1023 230 65 42 chr1 197982914 197983345 -44681008 + MER31-int LTR ERV1 1026 1466 -3470 283 273 40 0 chr1 197983367 197983466 -44680887 + MER31-int LTR ERV1 2292 2394 -2477 394 179 49 81 chr1 197983468 197983539 -44680814 + MER34 LTR ERV1 136 203 -339 2322 84 0 34 chr1 197983539 197983861 -44680492 + AluY SINE Alu 1 311 0 394 179 49 81 chr1 197983861 197983912 -44680441 + MER34 LTR ERV1 203 254 -288 275 186 0 0 chr1 197983920 197983963 -44680390 + MER34 LTR ERV1 500 542 0 3172 231 50 77 chr1 197984026 197985597 -44678756 + MER31-int LTR ERV1 1916 3527 -3790 1952 175 62 52 chr1 197985597 197985647 -44678706 - MSTB LTR MaLR 0 426 378 2416 76 0 0 chr1 197985647 197985948 -44678405 - AluY SINE Alu -10 301 1 1952 175 62 52 chr1 197985948 197986319 -44678034 - MSTB LTR MaLR -48 378 1 3172 231 50 77 chr1 197986319 197986832 -44677521 + MER31-int LTR ERV1 3527 5820 -1497 1072 233 32 109 chr1 197987159 197987563 -44676790 + MER31-int LTR ERV1 5824 6196 -1341 602 343 62 34 chr1 197988027 197988306 -44676047 + MER31-int LTR ERV1 6225 6495 -1042 685 306 14 0 chr1 197988306 197988515 -44675838 + MER70-int LTR ERVL 4475 4686 -337 602 343 62 34 chr1 197988515 197988561 -44675792 + MER31-int LTR ERV1 6495 6773 -764 214 296 0 0 chr1 197989348 197989402 -44674951 - L2 LINE L2 -5 3267 3214 244 265 140 29 chr1 197989659 197989795 -44674558 - MIR SINE MIR -92 170 20 216 224 0 0 chr1 197990074 197990141 -44674212 + (CA)n Simple_repeat Simple_repeat 2 68 0 2923 6 0 0 chr1 197990170 197990487 -44673866 - AluYb8 SINE Alu -1 317 1 237 266 0 0 chr1 197990549 197990643 -44673710 + GA-rich Low_complexity Low_complexity 3 96 0 341 245 38 19 chr1 197990865 197990971 -44673382 + L2 LINE L2 3206 3313 0 593 249 46 46 chr1 197991490 197991591 -44672762 - L1MC5 LINE L1 -29 7932 7832 2230 180 56 15 chr1 197991591 197992002 -44672351 + MSTA LTR MaLR 1 428 0 593 249 46 46 chr1 197992002 197992137 -44672216 - L1MC5 LINE L1 -128 7833 7696 259 259 12 0 chr1 197992194 197992275 -44672078 + (TA)n Simple_repeat Simple_repeat 2 83 0 311 309 73 18 chr1 197992519 197992629 -44671724 - HAL1 LINE L1 -1574 933 818 864 216 6 6 chr1 197992782 197992953 -44671400 + MER5B DNA MER1_type 7 177 -1 8225 21 0 3 chr1 197993270 197994630 -44669723 + L1PA3 LINE L1 4824 6155 0 22 0 0 0 chr1 197995655 197995677 -44668676 + AT_rich Low_complexity Low_complexity 1 22 0 1912 143 0 0 chr1 197997146 197997411 -44666942 - AluSx SINE Alu -45 267 3 208 151 0 57 chr1 197998037 197998108 -44666245 + (TTATA)n Simple_repeat Simple_repeat 1 66 0 1546 227 28 18 chr1 197998365 197998753 -44665600 + L1MA10 LINE L1 5943 6334 0 490 252 77 65 chr1 197998758 197999004 -44665349 + Charlie2 DNA MER1_type 1980 2228 -634 587 259 35 24 chr1 197999368 197999538 -44664815 - MER5B DNA MER1_type -4 174 3 29 0 0 0 chr1 197999563 197999592 -44664761 + AT_rich Low_complexity Low_complexity 1 29 0 2116 130 0 3 chr1 198000433 198000726 -44663627 + AluSx SINE Alu 1 292 -20 28 0 0 0 chr1 198000726 198000754 -44663599 + AT_rich Low_complexity Low_complexity 1 28 0 559 232 7 53 chr1 198000921 198001072 -44663281 + MLT1B LTR MaLR 1 144 -246 508 44 0 0 chr1 198001109 198001177 -44663176 - AluY SINE Alu -4 307 240 2275 75 0 4 chr1 198001177 198001455 -44662898 - AluY SINE Alu -34 277 1 1348 199 3 40 chr1 198001456 198001553 -44662800 + MLT1B LTR MaLR 96 195 -195 1741 159 125 6 chr1 198001553 198001873 -44662480 + MER46B DNA MER2_type 1 233 -3 1348 199 3 40 chr1 198001873 198002077 -44662276 + MLT1B LTR MaLR 195 386 -4 21 0 0 0 chr1 198002120 198002141 -44662212 + AT_rich Low_complexity Low_complexity 1 21 0 362 272 71 86 chr1 198002164 198002580 -44661773 + L1M4 LINE L1 5106 5521 -653 1509 201 17 10 chr1 198002699 198002987 -44661366 + AluJb SINE Alu 1 290 -22 1595 174 17 0 chr1 198003150 198003438 -44660915 + L1 LINE L1 3980 4272 -1874 1848 236 56 9 chr1 198003672 198004100 -44660253 - MER74A LTR ERVL -13 545 98 1526 163 31 16 chr1 198004436 198004694 -44659659 - AluJb SINE Alu -45 267 6 22 35 0 0 chr1 198006500 198006529 -44657824 + AT_rich Low_complexity Low_complexity 1 29 0 2546 191 63 2 chr1 198006661 198007106 -44657247 + MER70A LTR ERVL 1 472 0 1141 113 0 0 chr1 198007454 198007645 -44656708 + AluSc SINE Alu 132 322 0 594 320 17 22 chr1 198008757 198008988 -44655365 - MIR SINE MIR -16 246 17 189 0 0 0 chr1 198009645 198009666 -44654687 + (TG)n Simple_repeat Simple_repeat 2 22 0 225 0 0 0 chr1 198009801 198009826 -44654527 + (TA)n Simple_repeat Simple_repeat 2 26 0 1202 144 0 83 chr1 198010164 198010344 -44654009 - AluJo SINE Alu -20 292 133 1972 139 3 3 chr1 198010344 198010639 -44653714 - AluSx SINE Alu -17 295 1 1202 144 0 83 chr1 198010639 198010687 -44653666 - AluJo SINE Alu -179 133 83 1085 214 39 18 chr1 198010697 198010978 -44653375 - L1MB8 LINE L1 -2 6176 5890 690 264 83 25 chr1 198011164 198011406 -44652947 - MIR SINE MIR 0 262 7 2139 158 5 47 chr1 198013191 198013571 -44650782 + MLT1A1 LTR MaLR 2 365 0 2418 151 32 53 chr1 198014062 198014390 -44649963 + MER65C LTR ERV1 1 317 -144 877 147 7 0 chr1 198014390 198014526 -44649827 - L1PA15 LINE L1 -13 6152 6016 2418 151 32 53 chr1 198014526 198014668 -44649685 + MER65C LTR ERV1 317 461 0 1836 107 0 0 chr1 198014816 198015059 -44649294 + AluSc SINE Alu 57 299 -10 34 108 0 0 chr1 198015383 198015522 -44648831 + AT_rich Low_complexity Low_complexity 1 139 0 6503 221 32 19 chr1 198016616 198017968 -44646385 - L1P LINE L1 -3087 3059 1682 2037 158 0 0 chr1 198017968 198018266 -44646087 + AluSx SINE Alu 1 298 -14 6503 221 32 19 chr1 198018266 198018523 -44645830 - L1P LINE L1 -4464 1682 1430 1940 173 33 76 chr1 198018699 198018961 -44645392 - L1MB7 LINE L1 -145 6039 5767 2208 103 3 29 chr1 198018961 198019271 -44645082 - AluSq SINE Alu -11 302 1 1940 173 33 76 chr1 198019271 198019282 -44645071 - L1MB7 LINE L1 -417 5767 5757 661 204 0 29 chr1 198019282 198019419 -44644934 - FLAM_A SINE Alu 0 133 1 1940 173 33 76 chr1 198019419 198019602 -44644751 - L1MB7 LINE L1 -427 5757 5602 2327 100 7 0 chr1 198021808 198022108 -44642245 + AluSx SINE Alu 1 302 -10 1800 164 10 0 chr1 198022118 198022411 -44641942 + AluJo SINE Alu 3 298 -14 244 360 81 12 chr1 198022428 198022514 -44641839 - L2 LINE L2 -47 3225 3134 201 288 127 34 chr1 198023185 198023303 -44641050 + MIR3 SINE MIR 56 184 -24 1722 119 4 8 chr1 198023685 198023937 -44640416 - AluSx SINE Alu -16 296 46 293 148 180 0 chr1 198024010 198024071 -44640282 - AluJ/FLAM SINE Alu -229 73 2 21 0 0 0 chr1 198024229 198024250 -44640103 + AT_rich Low_complexity Low_complexity 1 21 0 2347 112 3 0 chr1 198024253 198024565 -44639788 - AluSq SINE Alu 0 313 1 188 295 84 11 chr1 198024652 198024747 -44639606 - MIR SINE MIR -116 146 45 508 186 42 34 chr1 198025847 198025965 -44638388 - MIR SINE MIR -67 141 23 343 286 73 45 chr1 198025975 198026153 -44638200 - MER5A DNA MER1_type -6 183 1 1167 122 0 0 chr1 198026182 198026338 -44638015 - AluSg/x SINE Alu -28 282 127 765 142 8 22 chr1 198026458 198026592 -44637761 - SVA Other Other -744 642 511 1031 135 6 13 chr1 198026592 198026748 -44637605 - AluSq SINE Alu -154 159 5 530 280 11 39 chr1 198027085 198027267 -44637086 + MER5A DNA MER1_type 7 183 -6 353 286 105 0 chr1 198027431 198027564 -44636789 + MIR SINE MIR 46 192 -70 753 175 50 25 chr1 198027836 198027996 -44636357 + MIR SINE MIR 2 165 -97 1855 171 0 0 chr1 198028367 198028672 -44635681 - AluJo SINE Alu -7 305 1 2242 102 10 3 chr1 198028706 198028999 -44635354 + AluSx SINE Alu 6 300 -12 2267 105 3 0 chr1 198029005 198029311 -44635042 + AluSx SINE Alu 1 307 -5 262 201 75 75 chr1 198030382 198030516 -44633837 - L1ME4a LINE L1 -1 6120 5987 875 137 118 146 chr1 198030520 198030841 -44633512 - MER4C LTR ERV1 0 465 154 1637 144 12 4 chr1 198030842 198031092 -44633261 + AluJb SINE Alu 1 252 -60 747 244 12 17 chr1 198031100 198031272 -44633081 - L1ME4a LINE L1 -2079 5729 5559 1880 152 0 7 chr1 198031610 198031912 -44632441 + AluJb SINE Alu 1 300 -12 1867 114 53 11 chr1 198032092 198032373 -44631980 + AluSx SINE Alu 1 293 -19 324 298 21 0 chr1 198032542 198032636 -44631717 - L1MC4 LINE L1 -1334 6708 6613 338 283 0 0 chr1 198032639 198032731 -44631622 + L1MC4 LINE L1 6614 6705 -1337 369 153 0 0 chr1 198032733 198032805 -44631548 + (TA)n Simple_repeat Simple_repeat 2 73 0 770 287 133 39 chr1 198032807 198033250 -44631103 + HAL1 LINE L1 1487 2007 -500 369 223 298 0 chr1 198033250 198033344 -44631009 + FLAM_A SINE Alu 1 122 -11 770 287 133 39 chr1 198033344 198033524 -44630829 + HAL1 LINE L1 2007 2169 -338 1920 143 0 54 chr1 198033622 198033936 -44630417 + AluSx SINE Alu 2 298 -14 1514 140 120 4 chr1 198034245 198034495 -44629858 - AluSx SINE Alu -29 283 5 864 239 59 13 chr1 198034497 198034735 -44629618 + HAL1 LINE L1 2254 2502 -5 441 315 27 13 chr1 198034872 198035021 -44629332 + L3 LINE CR1 145 295 -1282 21 0 0 0 chr1 198035027 198035048 -44629305 + AT_rich Low_complexity Low_complexity 1 21 0 3282 122 70 35 chr1 198035141 198035716 -44628637 + L1MB7 LINE L1 5590 6184 0 2382 129 134 8 chr1 198035734 198036114 -44628239 - MSTA LTR MaLR 0 428 1 398 210 268 14 chr1 198036561 198036699 -44627654 - MER5B DNA MER1_type 0 178 6 300 370 71 29 chr1 198036812 198037093 -44627260 - L2 LINE L2 -16 3256 2964 215 263 62 81 chr1 198037101 198037261 -44627092 + L3 LINE CR1 637 793 -784 292 370 27 14 chr1 198037350 198037496 -44626857 - MIR3 SINE MIR -45 163 16 270 220 11 99 chr1 198037503 198037594 -44626759 + L3 LINE CR1 818 900 -677 852 250 45 0 chr1 198037681 198037857 -44626496 + MIR SINE MIR 20 203 -59 8894 156 26 35 chr1 198037858 198037937 -44626416 + L1MA5 LINE L1 2701 2779 -3521 2260 114 3 0 chr1 198037937 198038236 -44626117 + AluSx SINE Alu 1 300 -12 787 144 45 38 chr1 198038239 198038371 -44625982 + FLAM_C SINE Alu 1 133 0 8894 156 26 35 chr1 198038371 198038890 -44625463 + L1MA5 LINE L1 2781 3303 -2997 1066 200 0 0 chr1 198038890 198039060 -44625293 + FAM SINE Alu 1 170 -5 8894 156 26 35 chr1 198039060 198039237 -44625116 + L1MA5 LINE L1 3303 3480 -2820 302 182 37 0 chr1 198039237 198039306 -44625047 + Alu SINE Alu 235 288 -14 8894 156 26 35 chr1 198039306 198040049 -44624304 + L1MA5 LINE L1 3480 4228 -2072 324 0 0 0 chr1 198040049 198040085 -44624268 + (CA)n Simple_repeat Simple_repeat 1 36 0 8894 156 26 35 chr1 198040085 198042092 -44622261 + L1MA5 LINE L1 4228 6250 -50 279 137 20 0 chr1 198042125 198042176 -44622177 + L1MA6 LINE L1 6249 6300 0 * 1698 247 99 13 chr1 198042172 198042438 -44621915 + L1ME3 LINE L1 5191 5433 -729 207 0 0 0 chr1 198042438 198042461 -44621892 + (GGGGA)n Simple_repeat Simple_repeat 5 27 0 1698 247 99 13 chr1 198042461 198042806 -44621547 + L1ME3 LINE L1 5433 5851 -311 655 177 41 5 chr1 198042831 198042971 -44621382 + L1ME3 LINE L1 6031 6333 -1 560 306 64 19 chr1 198043005 198043316 -44621037 + L3 LINE CR1 989 1313 -264 891 169 15 51 chr1 198043317 198043380 -44620973 - MER5A DNA MER1_type -1 188 124 2287 110 0 0 chr1 198043380 198043681 -44620672 + AluSx SINE Alu 2 302 -10 891 169 15 51 chr1 198043681 198043812 -44620541 - MER5A DNA MER1_type -65 124 1 200 233 242 33 chr1 198043856 198043976 -44620377 - MIR SINE MIR 0 262 118 233 274 7 118 chr1 198044019 198044120 -44620233 + L3 LINE CR1 1437 1522 -55 2311 82 3 0 chr1 198044120 198044543 -44619810 - AluSp SINE Alu 0 424 1 233 274 7 118 chr1 198044543 198044575 -44619778 + L3 LINE CR1 1522 1556 -21 1804 142 76 0 chr1 198045518 198045836 -44618517 + AluSg SINE Alu 1 310 0 2474 74 0 7 chr1 198045836 198046135 -44618218 + AluY SINE Alu 1 297 -14 205 305 16 94 chr1 198046688 198046816 -44617537 - L2 LINE L2 -4 3268 3151 251 247 118 24 chr1 198047051 198047136 -44617217 + L2 LINE L2 2999 3091 -181 1836 118 35 0 chr1 198047172 198047459 -44616894 - MER2 DNA MER2_type 0 345 49 376 94 16 31 chr1 198047460 198047524 -44616829 + U2 snRNA snRNA 1 63 -125 266 145 0 130 chr1 198047510 198047579 -44616774 - MER2 DNA MER2_type -285 60 1 * 613 192 23 0 chr1 198047730 198047860 -44616493 - L1ME3 LINE L1 -2 6160 6028 398 291 173 39 chr1 198047907 198048295 -44616058 + L3 LINE CR1 1134 1573 -4 345 350 48 21 chr1 198049707 198049893 -44614460 - L2 LINE L2 -186 3127 2937 202 307 0 13 chr1 198049895 198049970 -44614383 - L2 LINE L2 -10 3262 3189 292 106 0 0 chr1 198051097 198051144 -44613209 + MIR SINE MIR 101 147 -61 505 184 16 48 chr1 198051537 198051662 -44612691 - MIR SINE MIR -110 152 32 203 256 0 0 chr1 198052823 198052866 -44611487 + (CA)n Simple_repeat Simple_repeat 1 43 0 328 303 226 0 chr1 198052881 198053036 -44611317 + MIR SINE MIR 2 191 -71 236 218 36 0 chr1 198055306 198055361 -44608992 + CT-rich Low_complexity Low_complexity 1 57 0 268 345 0 0 chr1 198058349 198058462 -44605891 + L3b LINE CR1 1323 1435 -148 215 268 127 51 chr1 198058679 198058836 -44605517 + MIR3 SINE MIR 14 182 -26 2339 108 0 7 chr1 198059651 198059956 -44604397 - AluSq SINE Alu -10 303 1 186 43 0 0 chr1 198059981 198060004 -44604349 + (A)n Simple_repeat Simple_repeat 1 23 0 247 255 35 43 chr1 198060026 198060161 -44604192 + MIR SINE MIR 15 151 -57 246 164 180 0 chr1 198061053 198061114 -44603239 + MIR3 SINE MIR 84 155 -53 2114 135 0 10 chr1 198062132 198062429 -44601924 - AluSg SINE Alu -15 295 2 378 240 48 32 chr1 198062595 198062720 -44601633 - L3 LINE CR1 -39 1538 1412 260 284 21 11 chr1 198063510 198063605 -44600748 + MER5A DNA MER1_type 62 157 -32 337 283 59 20 chr1 198063679 198063708 -44600645 - MER5B DNA MER1_type -18 160 134 2388 103 0 0 chr1 198063708 198064018 -44600335 + AluSg SINE Alu 1 310 0 337 283 59 20 chr1 198064018 198064140 -44600213 - MER5B DNA MER1_type -44 134 3 324 271 121 35 chr1 198064789 198064988 -44599365 - L2 LINE L2 -369 2945 2730 724 174 15 8 chr1 198065136 198065268 -44599085 - AluJo SINE Alu -178 134 2 549 321 166 15 chr1 198065281 198065823 -44598530 - L2 LINE L2 -609 2705 2082 343 373 33 0 chr1 198066425 198066578 -44597775 - MIR SINE MIR -82 180 23 1990 142 10 10 chr1 198066874 198067185 -44597168 + AluJb SINE Alu 1 311 -1 1489 42 0 0 chr1 198068058 198068248 -44596105 - L1PA4 LINE L1 -3 6152 5963 23 0 0 0 chr1 198068780 198068803 -44595550 + AT_rich Low_complexity Low_complexity 1 23 0 2358 46 60 3 chr1 198068861 198069146 -44595207 + AluY SINE Alu 1 301 -10 2291 100 28 0 chr1 198070047 198070338 -44594015 + AluSx SINE Alu 1 299 -13 284 276 260 8 chr1 198070551 198070678 -44593675 - MER5B DNA MER1_type -16 162 4 622 162 0 0 chr1 198070714 198070813 -44593540 + U6 snRNA snRNA 1 99 -8 231 277 62 54 chr1 198070874 198071134 -44593219 + L2 LINE L2 2828 3089 -183 540 213 89 67 chr1 198071232 198071457 -44592896 + MIR SINE MIR 16 245 -17 335 337 75 52 chr1 198071807 198072074 -44592279 - L2 LINE L2 -5 3267 2995 821 95 9 0 chr1 198072074 198072179 -44592174 + AluSg/x SINE Alu 82 187 -123 474 43 0 0 chr1 198072179 198072248 -44592105 + AluY SINE Alu 241 309 0 683 255 57 27 chr1 198072477 198072712 -44591641 - MIR SINE MIR -18 244 1 1715 157 21 7 chr1 198073142 198073422 -44590931 + AluSx SINE Alu 14 297 -15 193 204 23 0 chr1 198074275 198074319 -44590034 + MIR SINE MIR 60 104 -158 2075 52 52 0 chr1 198074356 198074687 -44589666 - AluY SINE Alu 0 364 21 1907 144 44 26 chr1 198075029 198075331 -44589022 + MLT1A1 LTR MaLR 19 329 -36 2430 68 0 23 chr1 198075331 198075638 -44588715 - AluY SINE Alu -11 300 1 1907 144 44 26 chr1 198075638 198075676 -44588677 + MLT1A1 LTR MaLR 329 365 0 224 254 14 56 chr1 198075684 198075755 -44588598 - MIR SINE MIR -57 151 84 335 195 50 11 chr1 198075799 198075891 -44588462 + L1MD3 LINE L1 7693 7983 -3 799 144 0 0 chr1 198076137 198076269 -44588084 - FLAM_C SINE Alu -1 132 1 2224 103 3 10 chr1 198076554 198076854 -44587499 + AluSx SINE Alu 1 298 -14 349 304 112 85 chr1 198077601 198077819 -44586534 - L2 LINE L2 -17 3255 3027 2091 124 0 26 chr1 198077819 198078126 -44586227 - AluSx SINE Alu -13 299 1 349 304 112 85 chr1 198078126 198078167 -44586186 - L2 LINE L2 -245 3027 2989 218 248 116 41 chr1 198078174 198078295 -44586058 + L2 LINE L2 3184 3313 0 25 83 0 0 chr1 198078548 198078608 -44585745 + AT_rich Low_complexity Low_complexity 1 60 0 2227 133 0 3 chr1 198078626 198078935 -44585418 - AluSx SINE Alu -4 308 1 1300 129 0 0 chr1 198079048 198079219 -44585134 + AluSq SINE Alu 121 291 -22 1296 194 132 79 chr1 198079406 198079900 -44584453 + MLT2B1 LTR ERVL 1 520 0 277 185 222 0 chr1 198079979 198080060 -44584293 - MIR3 SINE MIR -1 207 109 259 289 58 10 chr1 198080252 198080356 -44583997 - L2 LINE L2 -64 3208 3100 196 150 50 0 chr1 198080680 198080720 -44583633 - MIR SINE MIR -58 150 109 510 289 246 9 chr1 198080964 198081314 -44583039 + L3 LINE CR1 1139 1571 -6 2191 114 7 0 chr1 198081646 198081936 -44582417 + AluSx SINE Alu 1 292 -20 775 166 11 1 chr1 198081986 198082143 -44582210 + L1MB3 LINE L1 5822 5981 -227 2065 156 7 0 chr1 198082168 198082476 -44581877 - AluJb SINE Alu -2 310 1 290 279 0 0 chr1 198082488 198082556 -44581797 + L2 LINE L2 3201 3268 -4 259 301 106 32 chr1 198082669 198082792 -44581561 - L2 LINE L2 -2 3270 3139 456 320 80 73 chr1 198083016 198083170 -44581183 - L2 LINE L2 -562 2752 2601 2022 134 3 29 chr1 198083170 198083476 -44580877 + AluSq SINE Alu 1 298 -15 456 320 80 73 chr1 198083476 198084342 -44580011 - L2 LINE L2 -713 2601 1725 358 317 82 66 chr1 198084550 198084853 -44579500 - L2 LINE L2 -9 3263 2956 204 350 87 29 chr1 198085018 198085121 -44579232 + L2 LINE L2 3154 3262 -10 2295 101 0 0 chr1 198086093 198086389 -44577964 + AluSx SINE Alu 11 306 -6 939 244 131 29 chr1 198086674 198087199 -44577154 - L1MC5 LINE L1 -13 7948 7370 831 170 0 7 chr1 198087201 198087336 -44577017 + AluJb SINE Alu 1 134 -178 239 174 52 130 chr1 198087342 198087408 -44576945 - L1MC5 LINE L1 -588 7373 7317 1976 108 7 14 chr1 198087408 198087750 -44576603 - AluSx SINE Alu 0 340 1 239 174 52 130 chr1 198087750 198087797 -44576556 - L1MC5 LINE L1 -644 7317 7268 1067 155 102 0 chr1 198087897 198088084 -44576269 - AluJo SINE Alu -22 290 85 1384 217 75 80 chr1 198088117 198088730 -44575623 - L1MC5 LINE L1 -738 7223 6614 23 0 0 0 chr1 198088900 198088923 -44575430 + AT_rich Low_complexity Low_complexity 1 23 0 245 140 19 48 chr1 198088926 198089005 -44575348 - MER63 DNA MER1_type -136 700 1 2161 69 0 4 chr1 198090432 198090706 -44573647 + AluSc SINE Alu 37 309 0 194 150 25 0 chr1 198091562 198091602 -44572751 + A-rich Low_complexity Low_complexity 5 45 0 2130 110 3 0 chr1 198092905 198093196 -44571157 + AluSp SINE Alu 1 292 -21 945 165 0 28 chr1 198093368 198093544 -44570809 - AluJo SINE Alu -125 187 17 1968 133 3 3 chr1 198093771 198094071 -44570282 + AluSx SINE Alu 1 300 -12 606 70 0 0 chr1 198094512 198094598 -44569755 - L1PB2 LINE L1 -2 6149 6064 2206 100 0 0 chr1 198096144 198096453 -44567900 + AluSc SINE Alu 1 309 0 413 127 0 0 chr1 198096748 198096811 -44567542 - Alu SINE Alu -11 300 238 2204 89 7 17 chr1 198096925 198097227 -44567126 - AluSx SINE Alu -13 299 1 914 269 70 0 chr1 198097537 198097764 -44566589 - MIR SINE MIR -2 260 18 1172 184 14 5 chr1 198098265 198098482 -44565871 - MER20 DNA MER1_type 0 219 1 582 191 155 19 chr1 198098747 198098994 -44565359 + L1MB8 LINE L1 5126 5401 -745 2336 87 0 0 chr1 198099288 198099588 -44564765 - AluSg SINE Alu -10 300 1 3564 142 84 45 chr1 198100187 198100839 -44563514 + L1MB8 LINE L1 5386 6074 -104 2388 73 0 0 chr1 198100839 198101142 -44563211 + AluY SINE Alu 1 303 -8 3564 142 84 45 chr1 198101142 198101251 -44563102 + L1MB8 LINE L1 6074 6177 -1 212 301 71 53 chr1 198101497 198101610 -44562743 - MIR SINE MIR -74 134 20 2304 74 10 3 chr1 198102503 198102812 -44561541 + AluY SINE Alu 1 311 0 1908 135 30 0 chr1 198103056 198103353 -44561000 + AluSx SINE Alu 1 306 -6 1324 148 99 4 chr1 198103404 198103647 -44560706 + AluJb SINE Alu 17 282 -30 209 56 0 28 chr1 198103652 198103688 -44560665 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr1 198105238 198105263 -44559090 + AT_rich Low_complexity Low_complexity 1 25 0 201 74 0 0 chr1 198108056 198108083 -44556270 + (CA)n Simple_repeat Simple_repeat 2 28 0 268 337 22 0 chr1 198109589 198109678 -44554675 + Charlie7 DNA MER1_type 1 91 -2521 747 174 8 0 chr1 198110475 198110596 -44553757 + FLAM_A SINE Alu 1 122 -11 29 78 0 0 chr1 198111001 198111065 -44553288 + GC_rich Low_complexity Low_complexity 1 64 0 385 314 106 14 chr1 198111710 198111917 -44552436 + MIR SINE MIR 24 249 -13 727 233 93 6 chr1 198112095 198112267 -44552086 + MIR SINE MIR 69 255 -7 2272 73 0 10 chr1 198113227 198113528 -44550825 - AluSp SINE Alu -15 298 1 2198 113 0 3 chr1 198113577 198113888 -44550465 - AluSg SINE Alu 0 310 1 257 293 53 80 chr1 198114234 198114384 -44549969 + MIR3 SINE MIR 4 149 -59 2152 105 3 10 chr1 198114437 198114743 -44549610 + AluSq SINE Alu 1 304 -9 353 285 49 42 chr1 198115721 198115865 -44548488 - MIR SINE MIR -89 173 29 225 333 114 15 chr1 198115952 198116084 -44548269 + L1MC5 LINE L1 7742 7886 -75 2061 150 117 10 chr1 198118380 198118773 -44545580 - MER63B DNA MER1_type -1 435 1 2245 95 0 3 chr1 198118918 198119223 -44545130 - AluSc SINE Alu -5 304 1 651 290 60 24 chr1 198119639 198119891 -44544462 + MIR SINE MIR 2 262 0 216 0 0 0 chr1 198120433 198120457 -44543896 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2517 267 89 67 chr1 198120740 198121057 -44543296 - L2 LINE L2 -1 3312 3003 2174 112 0 22 chr1 198121057 198121370 -44542983 + AluSx SINE Alu 1 306 -6 2517 267 89 67 chr1 198121370 198121928 -44542425 - L2 LINE L2 -310 3003 2459 2245 99 0 0 chr1 198121928 198122232 -44542121 + AluSq SINE Alu 1 304 -9 2517 267 89 67 chr1 198122232 198122768 -44541585 - L2 LINE L2 -854 2459 1863 360 271 0 0 chr1 198122786 198122871 -44541482 + AluJ/FLAM SINE Alu 9 83 -219 210 143 0 0 chr1 198126318 198126353 -44538000 + (GGAGAA)n Simple_repeat Simple_repeat 6 40 0 205 293 91 30 chr1 198127529 198127628 -44536725 + MIR3 SINE MIR 10 114 -94 460 320 74 25 chr1 198128753 198128956 -44535397 - MIR SINE MIR -33 229 17 452 274 126 16 chr1 198129063 198129253 -44535100 + MIR SINE MIR 12 222 -40 225 246 33 0 chr1 198129268 198129329 -44535024 - L2 LINE L2 -16 3256 3194 1227 94 0 0 chr1 198130937 198131096 -44533257 + AluSq SINE Alu 1 159 -154 1613 188 3 0 chr1 198131263 198131550 -44532803 + AluJb SINE Alu 1 288 -24 1729 154 0 38 chr1 198132124 198132261 -44532092 + AluJo SINE Alu 1 142 -170 2017 112 3 3 chr1 198132261 198132546 -44531807 + AluSx SINE Alu 1 285 -27 193 29 29 29 chr1 198132549 198132584 -44531769 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1729 154 0 38 chr1 198132584 198132761 -44531592 + AluJo SINE Alu 144 307 -5 251 47 70 0 chr1 198135296 198135339 -44529014 + T-rich Low_complexity Low_complexity 1 46 0 2114 94 0 0 chr1 198135339 198135616 -44528737 - AluSg SINE Alu -33 277 1 431 189 36 36 chr1 198135638 198135732 -44528621 + MIR SINE MIR 151 248 -14 2209 67 0 0 chr1 198135732 198136040 -44528313 - AluY SINE Alu 0 308 1 431 189 36 36 chr1 198136040 198136055 -44528298 + MIR SINE MIR 247 261 -1 354 246 153 8 chr1 198136765 198136883 -44527470 - MIR3 SINE MIR -25 183 49 204 217 29 43 chr1 198137579 198137648 -44526705 + (CCCCG)n Simple_repeat Simple_repeat 2 69 0 297 0 0 0 chr1 198138130 198138163 -44526190 + (CCGGG)n Simple_repeat Simple_repeat 1 33 0 342 0 0 0 chr1 198138469 198138507 -44525846 + (TG)n Simple_repeat Simple_repeat 2 39 0 2390 89 0 0 chr1 198139865 198140158 -44524195 - AluSq SINE Alu -20 293 1 372 242 33 11 chr1 198140209 198140300 -44524053 + MIR SINE MIR 94 186 -76 182 176 88 0 chr1 198140393 198140427 -44523926 + L2 LINE L2 3223 3259 -13 618 256 81 0 chr1 198140629 198140789 -44523564 + MIR SINE MIR 90 262 0 272 338 108 19 chr1 198141571 198141728 -44522625 + MIR SINE MIR 86 256 -6 279 326 22 0 chr1 198142519 198142608 -44521745 - MIR SINE MIR -89 119 29 2791 151 53 46 chr1 198142717 198143176 -44521177 + MER39 LTR ERV1 1 455 -252 2058 141 3 0 chr1 198143176 198143474 -44520879 + AluSx SINE Alu 1 299 -13 2791 151 53 46 chr1 198143474 198143563 -44520790 + MER39 LTR ERV1 455 542 -165 2323 96 3 40 chr1 198143563 198143887 -44520466 - AluSx SINE Alu 0 312 1 2791 151 53 46 chr1 198143887 198143961 -44520392 + MER39 LTR ERV1 542 682 -25 538 255 59 33 chr1 198145359 198145512 -44518841 - MIR3 SINE MIR -22 186 30 354 297 71 28 chr1 198145537 198145719 -44518634 + MIR SINE MIR 51 240 -22 1543 154 89 46 chr1 198146279 198146559 -44517794 - AluJb SINE Alu -20 292 1 2182 109 20 10 chr1 198146570 198146874 -44517479 - AluSx SINE Alu -5 307 1 619 187 14 7 chr1 198146874 198147013 -44517340 + L1MD3 LINE L1 7846 7985 -10 2255 87 3 3 chr1 198147078 198147389 -44516964 - AluSp SINE Alu 0 311 1 2169 111 3 0 chr1 198147397 198147686 -44516667 - AluSg SINE Alu -20 290 1 2625 58 0 0 chr1 198148119 198148427 -44515926 - AluY SINE Alu -3 308 1 873 148 0 15 chr1 198148432 198148567 -44515786 - FLAM_C SINE Alu 0 133 1 273 333 207 0 chr1 198149076 198149298 -44515055 + L3 LINE CR1 1303 1570 -7 1579 162 44 54 chr1 198149966 198150281 -44514072 - AluJo SINE Alu 0 312 1 254 260 39 77 chr1 198150340 198150444 -44513909 - L2 LINE L2 -70 3202 3103 371 219 153 44 chr1 198150625 198150762 -44513591 - MIR SINE MIR -48 214 63 2291 95 7 20 chr1 198151897 198152203 -44512150 + AluSx SINE Alu 1 302 -10 2473 83 0 0 chr1 198152428 198152729 -44511624 - AluSg SINE Alu -9 301 1 219 88 0 0 chr1 198152834 198152868 -44511485 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 223 191 0 0 chr1 198152879 198152921 -44511432 + MER91 DNA MER1_type 1 42 -148 197 273 0 23 chr1 198153002 198153046 -44511307 - L2 LINE L2 -28 3244 3202 570 265 41 9 chr1 198153132 198153316 -44511037 + MIR SINE MIR 1 188 -65 220 277 99 20 chr1 198153597 198153698 -44510655 - MIR SINE MIR -65 143 35 1217 162 129 33 chr1 198154049 198154290 -44510063 + AluJo SINE Alu 1 264 -48 280 272 144 48 chr1 198154355 198154480 -44509873 - MIR SINE MIR -45 217 81 1442 167 44 0 chr1 198155613 198155883 -44508470 - MER58B DNA MER1_type -19 322 41 2085 102 43 33 chr1 198155884 198156189 -44508164 + AluSc SINE Alu 1 308 -1 569 299 58 6 chr1 198156404 198156578 -44507775 - MIR SINE MIR -43 219 37 2239 86 3 51 chr1 198156696 198157009 -44507344 + AluSg SINE Alu 1 298 -12 205 329 53 0 chr1 198157069 198157145 -44507208 - L2 LINE L2 -540 2774 2695 901 155 7 13 chr1 198157146 198157301 -44507052 - AluJb SINE Alu -22 290 137 2238 111 13 3 chr1 198157315 198157622 -44506731 - AluSg SINE Alu 0 310 1 2113 121 0 29 chr1 198157636 198157942 -44506411 - AluSx SINE Alu -15 297 1 1017 76 0 0 chr1 198158072 198158191 -44506162 - FRAM SINE Alu -12 164 46 2383 102 3 0 chr1 198159306 198159610 -44504743 - AluSx SINE Alu -7 305 1 1225 129 12 0 chr1 198159610 198159780 -44504573 - FRAM SINE Alu -8 168 1 662 291 103 0 chr1 198159826 198160049 -44504304 - MIR SINE MIR -6 256 11 243 269 45 0 chr1 198160347 198160414 -44503939 - L2 LINE L2 -2 3270 3201 3130 176 36 37 chr1 198160420 198160598 -44503755 + L1MD2 LINE L1 5660 5837 -522 2046 146 7 0 chr1 198160598 198160899 -44503454 - AluSx SINE Alu -9 303 1 3130 176 36 37 chr1 198160899 198161421 -44502932 + L1MD2 LINE L1 5837 6359 0 1973 125 13 33 chr1 198161428 198161775 -44502578 + AluSx SINE Alu 1 312 0 252 0 0 0 chr1 198162264 198162292 -44502061 + (TC)n Simple_repeat Simple_repeat 1 28 0 924 171 53 92 chr1 198163564 198163656 -44500697 + MER20 DNA MER1_type 1 95 -124 2119 110 3 0 chr1 198163656 198163972 -44500381 + AluSg SINE Alu 1 317 0 924 171 53 92 chr1 198163972 198164106 -44500247 + MER20 DNA MER1_type 95 219 0 435 145 0 0 chr1 198164126 198164195 -44500158 + AluSp/q SINE Alu 236 304 -9 22 0 0 0 chr1 198164446 198164468 -44499885 + AT_rich Low_complexity Low_complexity 1 22 0 189 182 146 18 chr1 198165125 198165180 -44499173 - L3 LINE CR1 -132 1445 1384 400 288 117 0 chr1 198165709 198165901 -44498452 - MIR SINE MIR -27 235 20 635 242 0 20 chr1 198166065 198166218 -44498135 + MIR SINE MIR 99 248 -14 995 181 27 21 chr1 198166762 198166950 -44497403 - MER5A DNA MER1_type 0 189 1 758 84 19 0 chr1 198166998 198167105 -44497248 - AluY SINE Alu -9 302 194 669 152 0 9 chr1 198167250 198167362 -44496991 + L1PA15 LINE L1 6055 6165 0 2007 137 0 7 chr1 198167470 198167780 -44496573 + AluSx SINE Alu 1 308 0 6327 49 35 0 chr1 198168001 198168801 -44495552 + HERVK9 LTR ERVK 5089 5916 0 3803 102 0 21 chr1 198168801 198169323 -44495030 + MER9 LTR ERVK 1 511 0 207 327 133 12 chr1 198169418 198169583 -44494770 - L2 LINE L2 -1162 2152 1968 184 204 130 0 chr1 198170236 198170290 -44494063 + L3b LINE CR1 1296 1356 -227 204 40 0 0 chr1 198171271 198171296 -44493057 + (AGGGGG)n Simple_repeat Simple_repeat 3 27 0 1513 161 69 31 chr1 198172280 198172571 -44491782 + AluJb SINE Alu 1 302 -10 386 200 12 0 chr1 198173926 198174006 -44490347 - MIR SINE MIR -16 246 166 758 80 18 36 chr1 198174025 198174137 -44490216 + AluSp/q SINE Alu 190 299 -14 492 271 66 0 chr1 198174140 198174262 -44490091 - MIR SINE MIR -106 156 27 2535 66 0 3 chr1 198174763 198175067 -44489286 - AluY SINE Alu -8 303 1 2225 129 0 0 chr1 198176354 198176656 -44487697 + AluSx SINE Alu 1 302 -10 474 232 35 98 chr1 198177163 198177248 -44487105 + MER5A DNA MER1_type 1 90 -99 2414 103 0 3 chr1 198177248 198177558 -44486795 + AluSq SINE Alu 1 309 -4 474 232 35 98 chr1 198177558 198177679 -44486674 + MER5A DNA MER1_type 90 189 0 210 302 94 25 chr1 198177679 198177812 -44486541 + MER5A DNA MER1_type 37 189 0 1242 163 39 35 chr1 198178183 198178441 -44485912 - L1PA16 LINE L1 -2 6164 5906 2146 98 4 0 chr1 198179496 198179805 -44484548 - AluSc SINE Alu 0 310 1 22 35 0 0 chr1 198179956 198179985 -44484368 + AT_rich Low_complexity Low_complexity 1 29 0 1796 154 10 33 chr1 198179999 198180305 -44484048 - AluJb SINE Alu -13 299 1 1400 138 0 37 chr1 198180317 198180535 -44483818 - AluJb SINE Alu -7 305 96 232 158 0 0 chr1 198180703 198180741 -44483612 - MLT2D LTR ERVL -8 546 509 1521 147 79 38 chr1 198180769 198180877 -44483476 - MLT2D LTR ERVL -22 498 396 2233 118 0 3 chr1 198180877 198181174 -44483179 + AluSx SINE Alu 1 296 -16 1521 147 79 38 chr1 198181174 198181468 -44482885 - MLT2D LTR ERVL -124 396 1 447 273 134 50 chr1 198182163 198182401 -44481952 - MIR SINE MIR -3 259 2 2270 82 7 0 chr1 198182526 198182806 -44481547 + AluSp SINE Alu 1 282 -31 207 327 133 12 chr1 198183457 198183622 -44480731 + L2 LINE L2 1968 2152 -1162 3818 100 0 21 chr1 198183717 198184239 -44480114 - MER9 LTR ERVK 0 511 1 6351 48 35 0 chr1 198184239 198185039 -44479314 - HERVK9 LTR ERVK 0 5916 5089 2066 147 0 7 chr1 198185260 198185566 -44478787 - AluSx SINE Alu -8 304 1 741 144 8 8 chr1 198185674 198185799 -44478554 - L1PA15 LINE L1 0 6165 6041 308 355 121 20 chr1 198185800 198186048 -44478305 + L2 LINE L2 2573 2845 -469 409 108 54 0 chr1 198186204 198186278 -44478075 - Tigger2 DNA MER2_type -215 2503 2426 448 216 209 39 chr1 198186284 198186437 -44477916 - MER5A DNA MER1_type -4 185 7 2422 56 3 31 chr1 198186546 198186866 -44477487 - AluY SINE Alu 0 311 1 2129 132 0 3 chr1 198186871 198187166 -44477187 - AluSg SINE Alu -16 294 1 308 298 77 55 chr1 198187463 198187593 -44476760 - HAL1 LINE L1 -1230 1277 1140 2272 115 3 6 chr1 198187593 198187907 -44476446 - AluSq SINE Alu 0 313 1 308 298 77 55 chr1 198187907 198187957 -44476396 - HAL1 LINE L1 -1367 1140 1093 2655 143 5 30 chr1 198188028 198188469 -44475884 - Tigger2a DNA MER2_type -4 430 1 735 266 97 46 chr1 198188582 198188804 -44475549 - L1MC4 LINE L1 0 8042 7833 2036 145 34 0 chr1 198188804 198189101 -44475252 - AluSx SINE Alu -5 307 1 735 266 97 46 chr1 198189101 198189292 -44475061 - L1MC4 LINE L1 -209 7833 7608 825 172 4 110 chr1 198189305 198189365 -44474988 - MER3 DNA MER1_type -6 203 138 832 129 0 8 chr1 198189365 198189489 -44474864 + FLAM_A SINE Alu 1 123 -10 825 172 4 110 chr1 198189489 198189655 -44474698 - MER3 DNA MER1_type -71 138 1 318 298 83 6 chr1 198189655 198189823 -44474530 - L1MC4 LINE L1 -432 7610 7430 2549 77 0 6 chr1 198191415 198191728 -44472625 + AluSx SINE Alu 1 311 -1 186 43 0 0 chr1 198192133 198192156 -44472197 + (A)n Simple_repeat Simple_repeat 1 23 0 2460 62 0 20 chr1 198192898 198193202 -44471151 - AluY SINE Alu -13 298 1 697 240 0 0 chr1 198193407 198193536 -44470817 - FLAM_A SINE Alu -4 129 1 332 239 67 89 chr1 198194021 198194201 -44470152 + MIR SINE MIR 82 257 -5 371 237 181 37 chr1 198194519 198194734 -44469619 + L2 LINE L2 2860 3105 -167 715 298 102 4 chr1 198194798 198195033 -44469320 - MIR SINE MIR 0 262 5 2280 107 30 0 chr1 198195292 198195590 -44468763 - AluSq SINE Alu -5 308 2 2367 97 0 0 chr1 198195633 198195931 -44468422 - AluSc SINE Alu -11 298 1 257 224 0 0 chr1 198196620 198196669 -44467684 + L3 LINE CR1 1527 1575 -2 442 246 91 0 chr1 198197229 198197339 -44467014 + L2 LINE L2 3150 3269 -3 232 140 0 40 chr1 198198072 198198122 -44466231 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 379 167 141 0 chr1 198199487 198199565 -44464788 + MER5A DNA MER1_type 17 105 -84 21 0 0 0 chr1 198199908 198199929 -44464424 + AT_rich Low_complexity Low_complexity 1 21 0 572 223 65 46 chr1 198200561 198200821 -44463532 + L1MC4a LINE L1 5740 6004 -1804 1237 220 56 25 chr1 198200984 198201106 -44463247 + L1MD2 LINE L1 6015 6132 -227 186 43 0 0 chr1 198201106 198201129 -44463224 + (CA)n Simple_repeat Simple_repeat 2 24 0 1237 220 56 25 chr1 198201129 198201329 -44463024 + L1MD2 LINE L1 6132 6347 -12 212 309 0 0 chr1 198201362 198201417 -44462936 - MIR3 SINE MIR -3 205 151 294 353 53 7 chr1 198201583 198201733 -44462620 - MIR3 SINE MIR -50 158 2 588 259 47 24 chr1 198202964 198203176 -44461177 + LTR33 LTR ERVL 1 217 -304 1182 176 68 44 chr1 198203250 198203632 -44460721 + MSTB2 LTR MaLR 1 457 0 512 212 135 12 chr1 198203632 198203802 -44460551 + LTR33 LTR ERVL 331 521 0 593 322 96 13 chr1 198204264 198204578 -44459775 + MLT1K LTR MaLR 10 349 -239 301 226 126 48 chr1 198205110 198205286 -44459067 - MIR SINE MIR -42 220 38 298 122 0 20 chr1 198208685 198208734 -44455619 + MIR SINE MIR 17 64 -144 579 248 51 0 chr1 198208773 198208910 -44455443 - MIR SINE MIR -10 252 109 2305 91 0 3 chr1 198209393 198209740 -44454613 + AluSp SINE Alu 1 346 0 3839 132 30 73 chr1 198209760 198209845 -44454508 + L1MB2 LINE L1 5436 5523 -648 2270 115 0 0 chr1 198209845 198210141 -44454212 + AluSx SINE Alu 1 296 -16 3839 132 30 73 chr1 198210141 198210588 -44453765 + L1MB2 LINE L1 5523 5927 -244 1958 131 62 3 chr1 198210588 198210879 -44453474 - AluJb SINE Alu -4 308 1 3839 132 30 73 chr1 198210879 198211113 -44453240 + L1MB2 LINE L1 5927 6170 -1 31 44 0 0 chr1 198213804 198213849 -44450504 + AT_rich Low_complexity Low_complexity 1 45 0 1949 170 0 3 chr1 198214610 198214916 -44449437 - AluJo SINE Alu -7 305 1 2198 119 3 3 chr1 198214920 198215215 -44449138 - AluSx SINE Alu -17 295 1 371 282 0 0 chr1 198215298 198215383 -44448970 + MIR SINE MIR 86 170 -92 185 398 20 10 chr1 198215998 198216096 -44448257 + L2 LINE L2 3166 3264 -8 249 164 33 33 chr1 198218933 198218994 -44445359 + A-rich Low_complexity Low_complexity 2 62 0 648 213 109 38 chr1 198221448 198221659 -44442694 - L1ME LINE L1 -623 5541 5316 271 122 0 0 chr1 198221685 198221734 -44442619 - AluSx SINE Alu -4 298 250 1639 117 0 0 chr1 198221735 198221948 -44442405 - AluSx SINE Alu -99 213 1 281 215 0 0 chr1 198221961 198222026 -44442327 - L1ME LINE L1 -860 5286 5222 362 154 179 0 chr1 198222105 198222183 -44442170 + L2 LINE L2 3220 3311 -2 191 245 0 94 chr1 198223907 198223960 -44440393 + MIR SINE MIR 49 96 -166 1983 128 137 88 chr1 198224002 198224433 -44439920 - LTR47A LTR ERVL 0 452 1 457 286 11 62 chr1 198224828 198225006 -44439347 - MER5A DNA MER1_type 0 189 21 367 188 29 0 chr1 198225020 198225089 -44439264 - MER5B DNA MER1_type -2 176 106 259 184 161 0 chr1 198225190 198225277 -44439076 - MIR SINE MIR -56 206 106 1386 183 6 43 chr1 198225281 198225590 -44438763 + L1M3 LINE L1 5367 5671 -509 247 302 33 24 chr1 198225597 198225723 -44438630 - L2 LINE L2 -309 2963 2836 28 0 0 0 chr1 198225816 198225844 -44438509 + AT_rich Low_complexity Low_complexity 1 28 0 372 275 171 58 chr1 198225909 198226255 -44438098 + L2 LINE L2 2151 2535 -779 1402 183 10 35 chr1 198226281 198226592 -44437761 - L1MB5 LINE L1 -9 6165 5863 401 295 32 14 chr1 198226600 198226637 -44437716 - L1PA5 LINE L1 -248 5906 5870 1131 162 53 15 chr1 198226637 198226883 -44437470 - L1MB5 LINE L1 -307 5867 5609 2290 113 0 10 chr1 198226883 198227193 -44437160 - AluSq SINE Alu -6 307 1 1131 162 53 15 chr1 198227193 198227211 -44437142 - L1MB5 LINE L1 -565 5609 5593 578 217 9 0 chr1 198227225 198227331 -44437022 - AluJo SINE Alu -94 218 112 1091 166 14 1 chr1 198227331 198227538 -44436815 - L1MB5 LINE L1 -596 5584 5373 188 161 9 223 chr1 198227538 198227650 -44436703 + MIR SINE MIR 165 252 -10 2138 100 7 0 chr1 198227777 198228083 -44436270 - AluSp SINE Alu 0 308 1 574 168 62 37 chr1 198228226 198228247 -44436106 - L1MA10 LINE L1 -2 6332 6312 1802 217 50 8 chr1 198228247 198228730 -44435623 - L1ME2 LINE L1 -10 6154 5652 * 5564 118 22 5 chr1 198228726 198229675 -44434678 - L1PA16 LINE L1 -1 6165 5200 303 238 25 38 chr1 198229676 198229756 -44434597 + L2 LINE L2 2989 3067 -205 2802 209 21 82 chr1 198229786 198230018 -44434335 + Zaphod DNA AcHobo 9 254 -3777 324 155 42 0 chr1 198230018 198230089 -44434264 - L1MA8 LINE L1 -2 6289 6216 395 207 27 63 chr1 198230089 198230200 -44434153 - U6 snRNA snRNA 0 107 1 2802 209 21 82 chr1 198230200 198230399 -44433954 + Zaphod DNA AcHobo 253 463 -3568 2123 102 0 56 chr1 198230399 198230702 -44433651 - AluSx SINE Alu -22 290 5 2802 209 21 82 chr1 198230702 198230715 -44433638 + Zaphod DNA AcHobo 463 475 -3556 2193 97 17 0 chr1 198230715 198231005 -44433348 - AluSx SINE Alu -17 295 1 2802 209 21 82 chr1 198231005 198231310 -44433043 + Zaphod DNA AcHobo 475 710 -3321 1870 172 0 16 chr1 198231310 198231618 -44432735 + AluJb SINE Alu 1 303 -9 2802 209 21 82 chr1 198231618 198231678 -44432675 + Zaphod DNA AcHobo 710 772 -3259 751 185 0 8 chr1 198232005 198232135 -44432218 - FLAM_C SINE Alu -4 129 1 535 227 201 0 chr1 198232737 198232891 -44431462 + MIR SINE MIR 23 207 -55 299 326 163 5 chr1 198232908 198233092 -44431261 + MIR SINE MIR 7 219 -43 1633 170 44 37 chr1 198235018 198235312 -44429041 - AluJb SINE Alu -16 296 1 201 74 0 0 chr1 198235512 198235539 -44428814 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 249 311 164 0 chr1 198235908 198236030 -44428323 - MIR3 SINE MIR -57 151 10 2417 95 0 0 chr1 198237200 198237495 -44426858 - AluSx SINE Alu -17 295 1 2240 117 0 3 chr1 198237504 198237803 -44426550 - AluSx SINE Alu -14 298 1 256 240 190 30 chr1 198238208 198238308 -44426045 + L2 LINE L2 3152 3267 -5 624 204 13 32 chr1 198238635 198238781 -44425572 + MIR SINE MIR 65 209 -53 2022 48 0 0 chr1 198238781 198239012 -44425341 + AluY SINE Alu 65 295 -16 270 212 0 30 chr1 198239168 198239234 -44425119 + MER5A DNA MER1_type 43 106 -83 748 184 0 0 chr1 198239573 198239682 -44424671 + FLAM_C SINE Alu 9 117 -26 2340 85 7 0 chr1 198240640 198240935 -44423418 - AluSg SINE Alu -13 297 1 326 330 37 32 chr1 198240971 198241159 -44423194 + MER5A DNA MER1_type 1 189 0 331 52 0 69 chr1 198242927 198242985 -44421368 - Alu SINE Alu -7 294 241 249 152 0 22 chr1 198243085 198243131 -44421222 + MIR SINE MIR 218 262 0 2311 102 0 0 chr1 198243270 198243564 -44420789 - AluSg SINE Alu -16 294 1 346 333 68 14 chr1 198243693 198243900 -44420453 - L3 LINE CR1 -25 1552 1335 1753 156 28 11 chr1 198243910 198244193 -44420160 - AluJo SINE Alu -24 288 1 546 282 109 42 chr1 198244345 198244629 -44419724 + L2 LINE L2 3010 3312 -1 318 295 21 0 chr1 198245736 198245831 -44418522 + L2 LINE L2 2982 3078 -194 483 340 133 26 chr1 198245933 198246627 -44417726 + L2 LINE L2 2130 2897 -417 266 253 260 7 chr1 198246770 198246920 -44417433 + MIR SINE MIR 1 188 -74 999 115 0 0 chr1 198246954 198247084 -44417269 + AluY SINE Alu 1 130 -181 1522 82 0 5 chr1 198247134 198247329 -44417024 + AluSg/x SINE Alu 115 308 -2 211 272 148 0 chr1 198248725 198248806 -44415547 + MIR SINE MIR 106 198 -64 465 222 188 0 chr1 198251756 198251900 -44412453 - MIR3 SINE MIR -3 205 35 300 232 122 0 chr1 198252492 198252574 -44411779 - MIR3 SINE MIR -17 191 100 22 0 0 0 chr1 198253026 198253048 -44411305 + AT_rich Low_complexity Low_complexity 1 22 0 2206 120 0 0 chr1 198253188 198253487 -44410866 + AluSq SINE Alu 1 299 -14 2193 110 3 0 chr1 198253492 198253783 -44410570 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 198253917 198253947 -44410406 + AT_rich Low_complexity Low_complexity 1 30 0 1605 219 33 111 chr1 198254117 198254721 -44409632 - L1MB7 LINE L1 -28 6156 5600 2257 107 0 10 chr1 198254722 198255022 -44409331 - AluSq SINE Alu -16 297 1 556 217 9 0 chr1 198255053 198255159 -44409194 - AluJo SINE Alu -94 218 112 1148 166 14 1 chr1 198255159 198255366 -44408987 - L1MB7 LINE L1 -596 5584 5373 209 216 0 0 chr1 198255394 198255431 -44408922 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 2126 100 7 0 chr1 198255603 198255909 -44408444 - AluSp SINE Alu 0 308 1 624 168 62 37 chr1 198256052 198256073 -44408280 - L1MA10 LINE L1 -2 6332 6312 1929 216 50 8 chr1 198256073 198256551 -44407802 - L1ME2 LINE L1 -10 6154 5657 486 165 10 0 chr1 198256552 198256649 -44407704 - L1PA16 LINE L1 0 6166 6069 29 0 0 0 chr1 198256768 198256797 -44407556 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 198256813 198256841 -44407512 + AT_rich Low_complexity Low_complexity 1 28 0 970 183 11 11 chr1 198257241 198257421 -44406932 - FRAM SINE Alu 0 176 1 192 244 0 0 chr1 198258333 198258378 -44405975 - MIR SINE MIR -94 168 124 453 135 0 14 chr1 198258381 198258455 -44405898 + AluJo SINE Alu 63 135 -177 30 59 0 0 chr1 198258455 198258506 -44405847 + AT_rich Low_complexity Low_complexity 1 51 0 931 246 66 52 chr1 198258555 198258878 -44405475 + L1ME1 LINE L1 5060 5377 -785 1667 185 4 11 chr1 198258878 198259159 -44405194 + AluJo SINE Alu 1 279 -33 261 0 0 0 chr1 198259160 198259189 -44405164 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 931 246 66 52 chr1 198259189 198259504 -44404849 + L1ME1 LINE L1 5376 5704 -458 273 323 21 0 chr1 198259515 198259608 -44404745 + L1ME1 LINE L1 5834 5928 -238 457 253 112 56 chr1 198259929 198260233 -44404120 + L1ME4a LINE L1 5798 6118 -3 777 201 0 0 chr1 198260237 198260371 -44403982 + AluJo SINE Alu 2 135 -177 32 57 0 0 chr1 198260371 198260424 -44403929 + AT_rich Low_complexity Low_complexity 1 53 0 478 237 11 0 chr1 198260674 198260767 -44403586 - HERVK14 LTR ERVK -5851 94 1 3075 118 64 98 chr1 198260769 198261382 -44402971 - LTR14B LTR ERVK -2 606 15 10176 200 5 12 chr1 198261382 198263536 -44400817 - L1 LINE L1 -1400 4746 2609 320 148 0 0 chr1 198263537 198263591 -44400762 + AluSp/q SINE Alu 242 295 -8 29 0 0 0 chr1 198263723 198263752 -44400601 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 198263768 198263796 -44400557 + AT_rich Low_complexity Low_complexity 1 28 0 967 179 11 17 chr1 198264191 198264370 -44399983 - FRAM SINE Alu -2 174 1 193 325 26 0 chr1 198265280 198265357 -44398996 - MIR SINE MIR -94 168 90 191 293 24 24 chr1 198266621 198266703 -44397650 + MIR SINE MIR 70 151 -111 222 37 0 0 chr1 198268268 198268295 -44396058 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 2134 90 4 0 chr1 198268295 198268563 -44395790 - AluSp SINE Alu -44 269 1 787 248 13 13 chr1 198268564 198268794 -44395559 - L1ME4a LINE L1 -278 5843 5614 225 0 0 0 chr1 198269230 198269255 -44395098 + (TG)n Simple_repeat Simple_repeat 2 26 0 996 50 0 0 chr1 198269255 198269399 -44394954 + AluY SINE Alu 165 308 0 388 171 11 34 chr1 198269407 198269495 -44394858 - MIR SINE MIR -26 236 151 997 91 0 0 chr1 198269517 198269638 -44394715 + AluSg SINE Alu 1 121 -189 776 203 0 0 chr1 198269738 198269871 -44394482 - FLAM_C SINE Alu 0 133 1 181 324 44 0 chr1 198270158 198270226 -44394127 - L2 LINE L2 -2 3311 3241 1858 160 13 67 chr1 198270490 198270795 -44393558 - MLT1A1 LTR MaLR -10 355 35 2313 119 0 0 chr1 198270795 198271097 -44393256 - AluSq SINE Alu -11 302 1 1858 160 13 67 chr1 198271097 198271127 -44393226 - MLT1A1 LTR MaLR -330 35 38 1432 205 13 20 chr1 198271127 198271425 -44392928 + AluJo SINE Alu 1 296 -16 1858 160 13 67 chr1 198271425 198271463 -44392890 - MLT1A1 LTR MaLR -326 39 1 890 193 6 18 chr1 198271545 198271711 -44392642 - FRAM SINE Alu -12 164 1 1820 174 46 84 chr1 198271802 198272077 -44392276 - MLT1D LTR MaLR -44 461 177 198 0 0 0 chr1 198272077 198272099 -44392254 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1515 174 0 85 chr1 198272101 198272417 -44391936 - AluJb SINE Alu -20 292 4 1820 174 46 84 chr1 198272417 198272440 -44391913 - MLT1D LTR MaLR -329 176 154 1914 133 9 50 chr1 198272440 198272763 -44391590 - AluSx SINE Alu 0 312 3 1820 174 46 84 chr1 198272763 198272937 -44391416 - MLT1D LTR MaLR -351 154 3 391 197 0 0 chr1 198272938 198273014 -44391339 - MIR SINE MIR -128 134 59 2170 134 0 0 chr1 198273063 198273361 -44390992 + AluSx SINE Alu 3 300 -12 2218 118 0 3 chr1 198273361 198273664 -44390689 + AluSc SINE Alu 1 303 -6 26 0 0 0 chr1 198273765 198273791 -44390562 + AT_rich Low_complexity Low_complexity 1 26 0 336 260 172 60 chr1 198273808 198273941 -44390412 - L1MC4a LINE L1 -749 5397 5640 2155 102 10 10 chr1 198273941 198274236 -44390117 - AluSx SINE Alu -17 295 1 336 260 172 60 chr1 198274236 198274726 -44389627 - L1MC4a LINE L1 -505 5641 5207 2066 107 0 60 chr1 198274731 198275050 -44389303 - AluSx SINE Alu -12 300 1 6154 106 35 63 chr1 198275443 198275746 -44388607 + L1MA9 LINE L1 5168 5478 -834 1667 135 65 4 chr1 198275746 198276006 -44388347 + AluSq SINE Alu 35 310 -3 6154 106 35 63 chr1 198276006 198276865 -44387488 + L1MA9 LINE L1 5478 6306 -6 199 209 132 22 chr1 198276918 198277009 -44387344 - L2 LINE L2 -942 2372 2272 2244 99 0 0 chr1 198277223 198277526 -44386827 - AluSg SINE Alu 0 303 1 425 225 73 53 chr1 198277715 198277866 -44386487 - MIR SINE MIR -89 173 20 28 0 0 0 chr1 198278321 198278349 -44386004 + AT_rich Low_complexity Low_complexity 1 28 0 1940 82 93 0 chr1 198279487 198279756 -44384597 + AluSx SINE Alu 1 294 -18 2419 84 0 0 chr1 198279756 198280054 -44384299 + AluSx SINE Alu 1 298 -14 4359 132 29 11 chr1 198280064 198280783 -44383570 + L1MB3 LINE L1 5452 6183 0 2123 109 0 22 chr1 198280791 198281104 -44383249 + AluSx SINE Alu 1 306 -6 729 254 82 30 chr1 198281739 198281971 -44382382 - MIR SINE MIR -10 252 9 23 77 0 0 chr1 198283072 198283111 -44381242 + GC_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 198284430 198284458 -44379895 + AT_rich Low_complexity Low_complexity 1 28 0 405 0 0 0 chr1 198286361 198286406 -44377947 + (TG)n Simple_repeat Simple_repeat 1 45 0 2237 106 3 0 chr1 198286543 198286836 -44377517 - AluSq SINE Alu -19 294 1 291 304 173 6 chr1 198286976 198287144 -44377209 - MIR SINE MIR -35 227 32 1207 136 61 5 chr1 198287350 198287548 -44376805 - AluJb SINE Alu -18 294 86 656 222 129 55 chr1 198287752 198287918 -44376435 - MER46C DNA MER2_type -1 337 185 2516 68 3 0 chr1 198287918 198288225 -44376128 + AluSp SINE Alu 1 308 -5 656 222 129 55 chr1 198288225 198288369 -44375984 - MER46C DNA MER2_type -153 185 4 270 345 94 11 chr1 198288414 198288605 -44375748 - MIR SINE MIR -6 256 50 525 218 161 35 chr1 198289024 198289198 -44375155 + MER6B DNA MER2_type 10 205 -5 2348 49 0 3 chr1 198289990 198290313 -44374040 - AluY SINE Alu 0 322 1 2218 199 137 2 chr1 198290730 198291299 -44373054 + LTR65 LTR ERV1 1 646 -23 2440 30 26 7 chr1 198291527 198291832 -44372521 - AluY SINE Alu 0 311 1 209 81 0 27 chr1 198291991 198292028 -44372325 + (TA)n Simple_repeat Simple_repeat 1 36 0 1731 168 34 3 chr1 198292213 198292511 -44371842 - AluJo SINE Alu -3 309 3 1898 142 3 23 chr1 198292545 198292854 -44371499 + AluSx SINE Alu 1 303 -9 813 128 16 16 chr1 198292969 198293094 -44371259 + AluJo/FLAM SINE Alu 8 132 -180 1459 187 74 11 chr1 198293096 198293379 -44370974 + AluJb SINE Alu 1 301 -11 256 285 194 0 chr1 198293643 198293787 -44370566 + MIR SINE MIR 47 218 -44 1508 171 0 44 chr1 198293938 198294236 -44370117 - AluJb SINE Alu -27 285 1 259 32 0 0 chr1 198294238 198294269 -44370084 - U6 snRNA snRNA -75 32 2 746 171 338 27 chr1 198294300 198294522 -44369831 + AluJo SINE Alu 1 291 -21 2203 114 3 7 chr1 198294524 198294831 -44369522 + AluSq SINE Alu 1 306 -7 857 314 93 13 chr1 198295163 198295539 -44368814 + L3 LINE CR1 359 764 -813 548 292 131 75 chr1 198295545 198296004 -44368349 + L3 LINE CR1 899 1392 -185 2124 102 7 26 chr1 198296004 198296308 -44368045 - AluSx SINE Alu -13 299 2 548 292 131 75 chr1 198296308 198296368 -44367985 + L3 LINE CR1 1392 1447 -130 1647 168 20 46 chr1 198296600 198296903 -44367450 + AluJo SINE Alu 1 295 -17 498 263 150 0 chr1 198297181 198297314 -44367039 - MIR SINE MIR -108 154 2 1596 158 135 0 chr1 198297394 198297698 -44366655 - MER7A DNA MER2_type -3 343 1 2364 90 0 3 chr1 198297940 198298240 -44366113 - AluSx SINE Alu -13 299 1 26 30 0 0 chr1 198298522 198298555 -44365798 + AT_rich Low_complexity Low_complexity 1 33 0 1619 143 39 45 chr1 198298673 198298959 -44365394 + AluJo SINE Alu 1 284 -28 204 125 0 0 chr1 198298963 198298995 -44365358 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 51 13 4 0 chr1 198299162 198299255 -44365098 + AT_rich Low_complexity Low_complexity 1 58 0 182 233 315 0 chr1 198299299 198299372 -44364981 - MIR SINE MIR -71 137 42 352 342 153 22 chr1 198299508 198299783 -44364570 - L3 LINE CR1 -286 1291 981 1148 136 68 40 chr1 198300009 198300056 -44364297 - L1MB2 LINE L1 -3 6168 6124 2411 93 0 0 chr1 198300056 198300358 -44363995 - AluSc SINE Alu -7 302 1 1148 136 68 40 chr1 198300358 198300560 -44363793 - L1MB2 LINE L1 -47 6124 5912 2326 70 0 17 chr1 198300947 198301249 -44363104 - AluY SINE Alu -14 297 1 2283 96 17 0 chr1 198302076 198302378 -44361975 + AluSg SINE Alu 1 307 -3 1722 159 32 7 chr1 198302510 198302787 -44361566 + AluJb SINE Alu 1 284 -28 2158 130 3 0 chr1 198302823 198303116 -44361237 - AluSp SINE Alu -18 295 2 2267 96 0 0 chr1 198303588 198303881 -44360472 + AluSx SINE Alu 1 293 -19 273 73 0 24 chr1 198303890 198303931 -44360422 + Alu SINE Alu 2 41 -261 243 283 80 26 chr1 198304265 198304378 -44359975 - MIR SINE MIR -7 255 137 237 65 0 0 chr1 198304511 198304542 -44359811 + (TG)n Simple_repeat Simple_repeat 1 31 0 1926 134 3 3 chr1 198305602 198305886 -44358467 + AluJo SINE Alu 11 294 -18 200 182 0 0 chr1 198305994 198306027 -44358326 + (ATGGTG)n Simple_repeat Simple_repeat 3 35 0 221 289 48 12 chr1 198306032 198306115 -44358238 - MIR SINE MIR -24 238 153 825 125 8 16 chr1 198306495 198306623 -44357730 - FLAM_C SINE Alu -6 127 1 2041 121 7 3 chr1 198306634 198306939 -44357414 - AluSg SINE Alu 0 306 1 866 164 0 21 chr1 198307677 198307817 -44356536 + AluJb SINE Alu 2 138 -174 1958 146 0 0 chr1 198308164 198308444 -44355909 - AluSx SINE Alu -30 282 3 22 35 0 0 chr1 198308959 198308988 -44355365 + AT_rich Low_complexity Low_complexity 1 29 0 334 371 17 11 chr1 198309070 198309245 -44355108 - MER5B DNA MER1_type -1 177 2 21 71 0 0 chr1 198309418 198309460 -44354893 + AT_rich Low_complexity Low_complexity 1 42 0 1902 157 0 17 chr1 198310165 198310301 -44354052 + AluSx SINE Alu 1 138 -174 2249 125 0 0 chr1 198310301 198310614 -44353739 + AluSq SINE Alu 1 313 0 1902 157 0 17 chr1 198310614 198310777 -44353576 + AluSx SINE Alu 138 295 -17 2339 71 7 7 chr1 198310884 198311181 -44353172 + AluSp SINE Alu 1 297 -16 3053 67 9 34 chr1 198311571 198312019 -44352334 - L1PA10 LINE L1 -10 6158 5722 205 216 0 0 chr1 198314608 198314645 -44349708 + A-rich Low_complexity Low_complexity 1 37 0 203 200 0 0 chr1 198314726 198314761 -44349592 + T-rich Low_complexity Low_complexity 1 35 0 204 214 0 0 chr1 198318658 198318700 -44345653 + (TG)n Simple_repeat Simple_repeat 1 42 0 2414 102 0 3 chr1 198320297 198320610 -44343743 - AluSx SINE Alu 0 312 1 616 205 0 31 chr1 198320611 198320738 -44343615 - FLAM_A SINE Alu -12 130 8 263 285 73 60 chr1 198321016 198321167 -44343186 - MIR SINE MIR -59 203 51 1780 167 10 20 chr1 198322785 198323091 -44341262 + AluJo SINE Alu 6 308 -4 363 44 0 0 chr1 198323477 198323522 -44340831 + (TG)n Simple_repeat Simple_repeat 1 45 0 200 127 25 165 chr1 198324446 198324525 -44339828 + MIR SINE MIR 85 152 -110 2267 105 3 0 chr1 198324562 198324858 -44339495 + AluSx SINE Alu 1 297 -15 225 0 0 0 chr1 198325191 198325216 -44339137 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 11173 102 3 1 chr1 198326035 198328452 -44335901 + HERVK14 LTR ERVK 288 2777 -3168 688 136 0 18 chr1 198428464 198428574 -44235779 - MLT1A1 LTR MaLR -257 108 1 1435 225 16 0 chr1 198428574 198428894 -44235459 + L1MB7 LINE L1 5819 6143 -41 1611 155 33 10 chr1 198428913 198429216 -44235137 - AluJo SINE Alu -2 310 1 608 311 80 0 chr1 198429423 198429635 -44234718 - MIR SINE MIR -2 260 32 1752 158 3 13 chr1 198429763 198430066 -44234287 + AluJb SINE Alu 9 308 -4 664 197 47 0 chr1 198430164 198430291 -44234062 - FLAM_A SINE Alu 0 133 1 2027 133 0 0 chr1 198431199 198431544 -44232809 - AluSx SINE Alu 0 345 1 486 233 116 14 chr1 198431685 198431831 -44232522 - MER5A DNA MER1_type -13 176 16 339 176 33 11 chr1 198432077 198432168 -44232185 + GA-rich Low_complexity Low_complexity 4 96 0 2090 117 10 0 chr1 198432236 198432543 -44231810 - AluSx SINE Alu -2 310 1 1797 117 42 0 chr1 198432969 198433252 -44231101 + AluSx SINE Alu 3 297 -15 2196 111 0 0 chr1 198433258 198433552 -44230801 + AluSx SINE Alu 14 294 -18 206 291 6 42 chr1 198433629 198433794 -44230559 + (CAATA)n Simple_repeat Simple_repeat 3 161 0 1333 171 53 46 chr1 198434102 198434383 -44229970 - AluJo SINE Alu -23 289 7 1680 150 12 8 chr1 198434383 198434637 -44229716 + AluJo SINE Alu 37 291 -21 305 264 71 36 chr1 198434637 198434777 -44229576 + L1MC5 LINE L1 7669 7813 -148 945 185 46 82 chr1 198434960 198435170 -44229183 - MER58B DNA MER1_type -2119 301 104 1594 153 57 14 chr1 198435170 198435451 -44228902 + AluJb SINE Alu 1 293 -19 945 185 46 82 chr1 198435451 198435543 -44228810 - MER58B DNA MER1_type -2316 104 10 291 54 0 0 chr1 198435646 198435683 -44228670 + (CA)n Simple_repeat Simple_repeat 2 38 0 2574 54 10 0 chr1 198435883 198436180 -44228173 + AluSx SINE Alu 1 300 -12 31 58 0 0 chr1 198436759 198436811 -44227542 + GC_rich Low_complexity Low_complexity 1 52 0 200 167 21 0 chr1 198437195 198437243 -44227110 + GA-rich Low_complexity Low_complexity 6 54 0 1923 155 0 0 chr1 198437591 198437887 -44226466 + AluJb SINE Alu 9 304 -8 906 188 0 0 chr1 198437887 198438036 -44226317 + AluJb SINE Alu 134 282 -30 342 0 0 0 chr1 198438043 198438081 -44226272 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr1 198438089 198438119 -44226234 + AT_rich Low_complexity Low_complexity 1 30 0 850 144 0 0 chr1 198439375 198439493 -44224860 + FLAM_C SINE Alu 1 118 -25 838 173 0 0 chr1 198439658 198439791 -44224562 + FRAM SINE Alu 1 127 -49 2165 139 3 3 chr1 198439806 198440108 -44224245 - AluSx SINE Alu -10 302 1 2171 123 0 0 chr1 198440712 198441012 -44223341 - AluSx SINE Alu -12 300 1 181 324 76 14 chr1 198441028 198441159 -44223194 - MIR SINE MIR 0 262 120 1206 172 107 72 chr1 198441159 198441450 -44222903 + AluJo SINE Alu 1 301 -11 181 324 76 14 chr1 198441450 198441463 -44222890 - MIR SINE MIR -142 120 109 385 171 14 0 chr1 198441478 198441548 -44222805 - MER58A DNA MER1_type 0 107 37 1147 131 0 0 chr1 198442122 198442275 -44222078 + AluSx SINE Alu 1 153 -159 1035 200 0 10 chr1 198442277 198442472 -44221881 - AluJo SINE Alu -117 195 3 368 274 196 0 chr1 198442536 198442689 -44221664 - MER5A DNA MER1_type -3 186 4 2266 109 6 10 chr1 198442816 198443127 -44221226 - AluSx SINE Alu -2 310 1 1779 150 48 17 chr1 198443659 198443952 -44220401 + AluJb SINE Alu 3 304 -8 315 104 0 0 chr1 198444601 198444649 -44219704 + (CA)n Simple_repeat Simple_repeat 2 49 0 1739 163 31 3 chr1 198444705 198444994 -44219359 + AluJb SINE Alu 3 299 -13 672 190 0 0 chr1 198445115 198445231 -44219122 + FLAM_C SINE Alu 1 116 -17 330 202 132 44 chr1 198445386 198445500 -44218853 - MLT1F1 LTR MaLR -239 328 205 1887 164 7 0 chr1 198445969 198446261 -44218092 - AluJb SINE Alu -2 310 17 291 247 155 0 chr1 198446631 198446728 -44217625 - MIR SINE MIR -107 155 44 1709 164 24 17 chr1 198447513 198447806 -44216547 - AluJo SINE Alu -17 295 1 1444 136 9 9 chr1 198447827 198448040 -44216313 - AluJb SINE Alu -15 297 85 646 278 22 11 chr1 198448054 198448234 -44216119 - MER58A DNA MER1_type 0 224 43 933 212 0 0 chr1 198448355 198448520 -44215833 + AluJb SINE Alu 114 278 -34 234 222 0 0 chr1 198448666 198448720 -44215633 + MER58A DNA MER1_type 43 96 -11 198 143 0 0 chr1 198448735 198448770 -44215583 + (A)n Simple_repeat Simple_repeat 1 35 0 254 152 4 55 chr1 198448863 198448924 -44215429 + Alu SINE Alu 245 295 -5 2522 70 0 3 chr1 198448927 198449227 -44215126 + AluY SINE Alu 1 299 -12 565 173 36 0 chr1 198449709 198449819 -44214534 + AluJb SINE Alu 199 312 0 241 113 113 16 chr1 198449841 198449903 -44214450 + MLT1D LTR MaLR 438 505 0 635 305 87 49 chr1 198450193 198450533 -44213820 + L2 LINE L2 286 656 -2658 2516 80 0 6 chr1 198450533 198450847 -44213506 - AluSx SINE Alu 0 312 1 635 305 87 49 chr1 198450847 198451057 -44213296 + L2 LINE L2 656 857 -2457 976 192 0 0 chr1 198451524 198451691 -44212662 - AluJb SINE Alu -9 303 137 1820 165 3 17 chr1 198451939 198452075 -44212278 + AluJo SINE Alu 1 137 -179 2679 53 0 0 chr1 198452075 198452378 -44211975 + AluY SINE Alu 1 303 -8 1820 165 3 17 chr1 198452378 198452561 -44211792 + AluJo SINE Alu 137 316 0 1716 188 23 3 chr1 198452584 198452888 -44211465 - AluJb SINE Alu -2 310 1 1129 215 97 4 chr1 198453006 198453243 -44211110 - AluJo SINE Alu -49 263 5 2283 101 6 52 chr1 198453688 198454016 -44210337 + AluSq SINE Alu 1 313 0 2092 154 6 3 chr1 198454021 198454332 -44210021 + AluJb SINE Alu 1 312 0 769 161 24 0 chr1 198455386 198455510 -44208843 - LTR12 LTR ERV1 -229 485 359 344 222 0 0 chr1 198455510 198455591 -44208762 - LTR30 LTR ERV1 -98 624 544 1100 101 304 0 chr1 198455596 198455803 -44208550 - LTR12 LTR ERV1 -442 272 3 818 188 103 54 chr1 198455805 198456029 -44208324 - L1MD2 LINE L1 -53 6306 6072 250 271 156 8 chr1 198456235 198456357 -44207996 - MIR3 SINE MIR -52 156 17 25 0 0 0 chr1 198456994 198457019 -44207334 + GC_rich Low_complexity Low_complexity 1 25 0 210 120 40 40 chr1 198457475 198457550 -44206803 + C-rich Low_complexity Low_complexity 3 77 0 22 99 0 0 chr1 198457708 198457779 -44206574 + GC_rich Low_complexity Low_complexity 1 71 0 22 0 0 0 chr1 198457872 198457894 -44206459 + GC_rich Low_complexity Low_complexity 1 22 0 312 158 0 0 chr1 198459105 198459162 -44205191 + T-rich Low_complexity Low_complexity 1 57 0 1002 114 139 24 chr1 198459181 198459347 -44205006 - AluJb SINE Alu -127 185 1 224 294 56 56 chr1 198459673 198459799 -44204554 - MIR SINE MIR -113 149 24 869 217 48 0 chr1 198459888 198460095 -44204258 - MER20 DNA MER1_type -1 218 2 2009 83 101 11 chr1 198462869 198463127 -44201226 + AluSp SINE Alu 2 288 -25 603 0 0 0 chr1 198463127 198463194 -44201159 + (AATAG)n Simple_repeat Simple_repeat 4 70 0 2009 83 101 11 chr1 198463194 198463212 -44201141 + AluSp SINE Alu 288 303 -10 195 125 0 0 chr1 198463497 198463537 -44200816 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 2005 119 40 0 chr1 198463777 198464054 -44200299 - AluSx SINE Alu -17 295 8 364 240 70 102 chr1 198464088 198464338 -44200015 - HAL1 LINE L1 0 2507 2269 2131 142 13 0 chr1 198464338 198464641 -44199712 - AluSx SINE Alu -5 307 1 364 240 70 102 chr1 198464641 198464732 -44199621 - HAL1 LINE L1 -238 2269 2177 357 152 30 0 chr1 198464732 198464798 -44199555 - MER20 DNA MER1_type -41 178 111 1982 168 0 0 chr1 198464798 198465096 -44199257 - AluJb SINE Alu -14 298 1 1134 131 258 54 chr1 198465186 198465412 -44198941 + MER83B LTR ERV1 1 180 -198 2354 104 3 3 chr1 198465412 198465721 -44198632 - AluSp SINE Alu -4 309 1 1134 131 258 54 chr1 198465721 198465808 -44198545 + MER83B LTR ERV1 180 378 0 364 188 42 10 chr1 198465840 198465936 -44198417 - HAL1 LINE L1 -475 2032 1934 354 322 80 5 chr1 198465940 198466139 -44198214 - HAL1 LINE L1 -843 1664 1451 893 265 60 29 chr1 198466145 198466169 -44198184 - HAL1 LINE L1 -1304 1203 1181 1017 177 0 6 chr1 198466169 198466344 -44198009 - FAM SINE Alu -1 174 1 893 265 60 29 chr1 198466344 198466734 -44197619 - HAL1 LINE L1 -1326 1181 776 188 286 36 0 chr1 198467097 198467153 -44197200 + MIR SINE MIR 151 208 -54 1784 148 0 4 chr1 198467232 198467509 -44196844 + AluJo SINE Alu 36 311 -1 22 0 0 0 chr1 198467630 198467652 -44196701 + AT_rich Low_complexity Low_complexity 1 22 0 9484 201 33 5 chr1 198567677 198569723 -44094630 - L1M4b LINE L1 -1862 5095 2992 243 88 0 0 chr1 198569724 198569758 -44094595 + (TA)n Simple_repeat Simple_repeat 1 34 0 835 184 95 125 chr1 198569758 198570181 -44094172 - LTR7 LTR ERV1 -40 410 1 3185 147 27 18 chr1 198570181 198570733 -44093620 - HERVH LTR ERV1 0 7713 7157 1515 164 19 0 chr1 198570726 198570989 -44093364 - HERVH LTR ERV1 -1697 6016 5749 * 6570 132 3 4 chr1 198570986 198572828 -44091525 - HERVH LTR ERV1 -1805 5286 3140 * 12881 137 35 23 chr1 198572807 198574983 -44089370 - HERVH LTR ERV1 -4718 2995 793 2504 163 11 24 chr1 198575037 198575502 -44088851 - HERVH LTR ERV1 -7254 459 1 714 105 19 19 chr1 198575504 198575609 -44088744 - LTR7 LTR ERV1 0 450 346 1219 184 34 8 chr1 198575609 198575875 -44088478 - L1M4b LINE L1 -3956 3002 2730 3766 95 12 4 chr1 198575875 198576382 -44087971 + MER9 LTR ERVK 1 511 0 21837 72 9 9 chr1 198576382 198579170 -44085183 + HERVK9 LTR ERVK 1 2786 -3130 1969 39 0 0 chr1 198579170 198579401 -44084952 + HERVK9 LTR ERVK 3711 3941 -1975 * 7632 106 10 3 chr1 198579391 198580447 -44083906 + HERVK9 LTR ERVK 4571 5634 -282 2327 110 14 13 chr1 198580472 198580826 -44083527 + HERVK9 LTR ERVK 4936 5916 0 3633 102 4 19 chr1 198580826 198581345 -44083008 + MER9 LTR ERVK 1 511 0 1505 222 14 7 chr1 198581379 198581676 -44082677 - AluJb SINE Alu -13 299 1 741 139 41 6 chr1 198581688 198581860 -44082493 + CT-rich Low_complexity Low_complexity 3 180 0 231 114 0 0 chr1 198581864 198581899 -44082454 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 3411 177 38 33 chr1 198581918 198582172 -44082181 - L1M4b LINE L1 -4760 2198 1947 1575 225 0 7 chr1 198582172 198582479 -44081874 - AluJo SINE Alu -7 305 1 3411 177 38 33 chr1 198582479 198582981 -44081372 - L1M4b LINE L1 -5011 1947 1438 3017 185 22 4 chr1 198582994 198583529 -44080824 - L1M4b LINE L1 -6231 727 183 683 205 19 8 chr1 198583524 198583703 -44080650 - L1 LINE L1 -970 5176 4992 * 336 200 70 0 chr1 198583670 198583770 -44080583 - L1M4b LINE L1 -6664 195 89 * 261 0 0 0 chr1 198583777 198583806 -44080547 + (TG)n Simple_repeat Simple_repeat 2 30 0 2222 126 10 0 chr1 198583806 198584116 -44080237 - AluSp SINE Alu 0 313 1 1023 104 8 0 chr1 198584116 198584250 -44080103 - AluSq/x SINE Alu -178 135 1 323 181 153 0 chr1 198584264 198584336 -44080017 - L1M4b LINE L1 -6762 97 15 34557 92 16 28 chr1 198584493 198586458 -44077895 + L1PA6 LINE L1 11 1999 -4155 400 103 0 0 chr1 198586458 198586526 -44077827 + L1PA2 LINE L1 6088 6155 0 34557 92 16 28 chr1 198586526 198590798 -44073555 + L1PA6 LINE L1 1999 6152 -2 482 282 79 42 chr1 198590800 198591144 -44073209 + L1M4 LINE L1 4085 4450 -1696 2255 112 0 7 chr1 198591144 198591440 -44072913 + AluSx SINE Alu 1 294 -18 482 282 79 42 chr1 198591440 198591524 -44072829 + L1M4 LINE L1 4450 4529 -1617 489 110 0 0 chr1 198591707 198591780 -44072573 + (TA)n Simple_repeat Simple_repeat 2 74 0 2362 58 0 27 chr1 198591780 198592075 -44072278 - AluY SINE Alu -24 287 1 2419 140 18 37 chr1 198592086 198592209 -44072144 - MER44D DNA MER2_type -1982 505 381 2254 124 0 0 chr1 198592209 198592515 -44071838 - AluSc SINE Alu -3 306 1 2419 140 18 37 chr1 198592515 198592828 -44071525 - MER44D DNA MER2_type -2106 381 22 479 223 216 0 chr1 198592968 198593055 -44071298 - L1M4b LINE L1 -6664 195 128 216 0 0 0 chr1 198593055 198593079 -44071274 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 479 223 216 0 chr1 198593079 198593139 -44071214 - L1M4b LINE L1 -6731 128 16 341 136 0 17 chr1 198593135 198593194 -44071159 + L1M2c LINE L1 502 559 -6230 * 1409 158 46 8 chr1 198593228 198593488 -44070865 - MLT1A1 LTR MaLR -84 281 12 1265 254 55 11 chr1 198593538 198593900 -44070453 - L1MC4 LINE L1 -979 7063 6686 415 131 0 13 chr1 198593900 198593969 -44070384 - MLT1A1 LTR MaLR -78 318 225 1646 130 60 85 chr1 198593969 198594322 -44070031 - MER7A DNA MER2_type -3 343 2 242 213 0 25 chr1 198594331 198594411 -44069942 + (CATA)n Simple_repeat Simple_repeat 3 80 0 2160 234 59 88 chr1 198594433 198595006 -44069347 + L1MC4 LINE L1 7086 7674 -368 1946 164 3 3 chr1 198595006 198595316 -44069037 + AluJb SINE Alu 1 310 -2 2160 234 59 88 chr1 198595316 198595581 -44068772 + L1MC4 LINE L1 7674 7945 -97 2247 107 7 10 chr1 198595581 198595891 -44068462 + AluSq SINE Alu 1 309 -4 2160 234 59 88 chr1 198595891 198595976 -44068377 + L1MC4 LINE L1 7945 7982 -60 1691 173 0 77 chr1 198595976 198596300 -44068053 - AluJo SINE Alu -13 299 1 2160 234 59 88 chr1 198596300 198596360 -44067993 + L1MC4 LINE L1 7982 8042 0 382 344 71 0 chr1 198596484 198596638 -44067715 - L3 LINE CR1 -17 1560 1396 300 243 172 53 chr1 198597073 198597242 -44067111 + LTR16C LTR ERVL 303 491 0 611 178 47 16 chr1 198597455 198597584 -44066769 - FLAM_C SINE Alu 0 133 1 236 216 39 0 chr1 198600383 198600434 -44063919 + G-rich Low_complexity Low_complexity 3 55 0 309 68 0 0 chr1 198600716 198600760 -44063593 + (TG)n Simple_repeat Simple_repeat 1 44 0 328 278 16 40 chr1 198600852 198600978 -44063375 + MIR3 SINE MIR 81 203 -5 2304 112 7 0 chr1 198601295 198601598 -44062755 - AluSx SINE Alu -7 305 1 430 314 69 16 chr1 198601601 198601789 -44062564 + L2 LINE L2 3115 3312 -1 285 285 77 23 chr1 198601822 198601952 -44062401 - MIR3 SINE MIR -28 180 44 1974 148 30 7 chr1 198602021 198602326 -44062027 + AluSx SINE Alu 1 312 0 189 267 89 50 chr1 198602788 198602889 -44061464 + MIR SINE MIR 37 141 -67 32 0 0 0 chr1 198602996 198603028 -44061325 + AT_rich Low_complexity Low_complexity 1 32 0 187 250 45 0 chr1 198603886 198603930 -44060423 - MIR SINE MIR -63 145 100 496 340 30 5 chr1 198604981 198605178 -44059175 - MIR3 SINE MIR -5 203 2 2431 81 3 0 chr1 198605701 198605999 -44058354 - AluSg SINE Alu -11 299 1 1996 105 0 22 chr1 198607346 198607623 -44056730 - AluSx SINE Alu -20 292 22 2190 133 13 0 chr1 198607822 198608131 -44056222 + AluSq SINE Alu 1 313 0 1514 199 20 7 chr1 198609998 198610290 -44054063 - AluJo SINE Alu -16 296 1 249 319 86 0 chr1 198610313 198610429 -44053924 + MIR SINE MIR 131 256 -6 468 256 40 18 chr1 198610856 198611030 -44053323 + MIR SINE MIR 20 190 -67 345 241 9 71 chr1 198611169 198611281 -44053072 - MIR SINE MIR -70 192 88 442 364 47 20 chr1 198611366 198611619 -44052734 - MIR SINE MIR 0 262 3 431 256 37 49 chr1 198612141 198612305 -44052048 + MIR SINE MIR 29 190 -72 458 234 79 4 chr1 198613384 198613539 -44050814 - MIR SINE MIR -55 153 14 246 290 14 0 chr1 198613616 198613685 -44050668 + L2 LINE L2 3194 3263 -9 237 317 32 16 chr1 198614778 198614901 -44049452 + L3b LINE CR1 1332 1456 -127 196 146 122 0 chr1 198615469 198615510 -44048843 + MIR SINE MIR 100 145 -63 * 491 333 191 17 chr1 198615507 198616264 -44048089 + L2 LINE L2 2376 3267 -5 2334 107 0 0 chr1 198616663 198616961 -44047392 - AluSx SINE Alu -14 298 1 371 299 94 75 chr1 198618577 198618831 -44045522 + L2 LINE L2 3014 3272 0 207 0 0 0 chr1 198619756 198619779 -44044574 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 274 154 0 19 chr1 198619781 198619833 -44044520 - L2 LINE L2 -12 3301 3251 355 280 133 0 chr1 198622119 198622262 -44042091 + MIR SINE MIR 46 207 -55 230 237 0 79 chr1 198622466 198622542 -44041811 + L2 LINE L2 3244 3313 0 326 265 162 0 chr1 198622682 198622799 -44041554 + MIR SINE MIR 120 255 -7 312 70 0 0 chr1 198623439 198623482 -44040871 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 240 283 0 17 chr1 198624369 198624429 -44039924 - MIR3 SINE MIR -28 180 122 182 343 29 0 chr1 198625646 198625716 -44038637 + MIR SINE MIR 190 261 -1 2171 121 3 10 chr1 198626355 198626668 -44037685 - AluSx SINE Alu -1 311 1 253 119 0 0 chr1 198629812 198629854 -44034499 + L2 LINE L2 3271 3312 -1 227 267 60 43 chr1 198830137 198830210 -43834143 - L2 LINE L2 -892 2422 2345 586 283 52 23 chr1 198830210 198830383 -43833970 - MER45A DNA AcHobo 0 178 1 227 267 60 43 chr1 198830383 198830425 -43833928 - L2 LINE L2 -969 2345 2305 642 194 7 35 chr1 198831628 198831646 -43832707 - MER3 DNA MER1_type -18 144 127 2090 112 7 0 chr1 198831646 198831942 -43832411 + AluSg SINE Alu 1 298 -12 642 194 7 35 chr1 198831942 198832067 -43832286 - MER3 DNA MER1_type -35 127 5 249 296 49 15 chr1 198832130 198832303 -43832050 - MIR SINE MIR -15 247 19 926 317 18 30 chr1 198832320 198832654 -43831699 - L3 LINE CR1 -685 892 563 510 274 30 7 chr1 198832924 198833059 -43831294 - MLT1G1 LTR MaLR -10 585 448 324 307 90 60 chr1 198833235 198833535 -43830818 + L2 LINE L2 2981 3289 -24 677 278 76 18 chr1 198833837 198834060 -43830293 - MIR SINE MIR -25 237 2 1000 188 38 48 chr1 198835435 198835727 -43828626 + Charlie1 DNA MER1_type 2386 2674 -87 324 133 0 0 chr1 198835729 198835789 -43828564 + (TA)n Simple_repeat Simple_repeat 1 60 0 2061 68 103 0 chr1 198836346 198836627 -43827726 - AluSg SINE Alu 0 310 1 390 312 81 32 chr1 198837015 198837201 -43827152 + MIR3 SINE MIR 14 208 0 495 309 80 74 chr1 198837427 198837804 -43826549 - L2 LINE L2 -3 3310 2926 707 179 8 22 chr1 198837804 198837938 -43826415 + FLAM_A SINE Alu 2 133 0 495 309 80 74 chr1 198837938 198838272 -43826081 - L2 LINE L2 -387 2926 2596 3093 122 94 48 chr1 198838277 198838843 -43825510 - LTR14B LTR ERVK 0 608 17 203 363 6 70 chr1 198838843 198839000 -43825353 - L2 LINE L2 -717 2597 2451 2440 285 28 23 chr1 198839140 198839892 -43824461 + ERVL LTR ERVL 4608 5363 -401 1816 229 199 23 chr1 198840231 198840806 -43823547 + LTR50 LTR ERVL 15 724 -71 1972 165 52 26 chr1 198840806 198841193 -43823160 + MLT2C1 LTR ERVL 1 397 0 1816 229 199 23 chr1 198841193 198841281 -43823072 + LTR50 LTR ERVL 724 795 0 780 215 10 29 chr1 198841512 198841717 -43822636 + AluSq SINE Alu 2 202 -111 277 299 140 0 chr1 198843720 198843827 -43820526 + MIR SINE MIR 131 252 -10 204 319 147 17 chr1 198845113 198845229 -43819124 + MIR SINE MIR 21 151 -57 672 95 0 11 chr1 198846105 198846200 -43818153 - L1PB3 LINE L1 0 6154 6061 208 321 25 25 chr1 198846763 198846844 -43817509 + L3b LINE CR1 1331 1411 -172 1726 127 45 0 chr1 198846880 198847147 -43817206 - L1PB3 LINE L1 -107 6047 5769 2484 210 119 17 chr1 198847163 198847825 -43816528 - L1PA8 LINE L1 -4 6168 5439 439 48 0 16 chr1 198847925 198847988 -43816365 - L1P5 LINE L1 -665 5489 5428 2251 100 0 0 chr1 198849024 198849325 -43815028 - AluSq SINE Alu -12 301 1 2039 120 0 0 chr1 198850186 198850477 -43813876 - AluSg SINE Alu -19 291 1 553 285 7 0 chr1 198850478 198850622 -43813731 - MIR SINE MIR -97 165 21 27 0 0 0 chr1 198851433 198851460 -43812893 + AT_rich Low_complexity Low_complexity 1 27 0 380 270 135 0 chr1 198851931 198852057 -43812296 + MIR SINE MIR 120 262 0 350 295 29 29 chr1 198853281 198853386 -43810967 - MIR3 SINE MIR -8 200 96 2189 204 74 21 chr1 198853609 198853649 -43810704 - MLT2B1 LTR ERVL -10 510 474 303 28 0 0 chr1 198853649 198853685 -43810668 + (TG)n Simple_repeat Simple_repeat 1 36 0 2189 204 74 21 chr1 198853685 198854128 -43810225 - MLT2B1 LTR ERVL -46 474 1 1872 158 81 3 chr1 198854215 198854538 -43809815 + MER7A DNA MER2_type 1 346 0 565 104 0 0 chr1 198855062 198855139 -43809214 - AluY SINE Alu -102 209 133 2510 49 3 0 chr1 198855140 198855445 -43808908 - AluY SINE Alu -4 307 2 231 36 0 0 chr1 198855457 198855485 -43808868 + (T)n Simple_repeat Simple_repeat 1 28 0 2812 46 0 0 chr1 198855485 198855811 -43808542 - LTR17 LTR ERV1 -454 326 1 529 48 0 0 chr1 198855811 198855873 -43808480 - HERV17 LTR ERV1 0 8626 8565 243 0 0 0 chr1 198855941 198855968 -43808385 + (CA)n Simple_repeat Simple_repeat 1 27 0 2224 75 0 39 chr1 198857044 198857352 -43807001 + AluY SINE Alu 1 296 -15 197 425 50 7 chr1 198857622 198857763 -43806590 - L2 LINE L2 -24 3248 3102 235 248 70 54 chr1 198858447 198858576 -43805777 - MIR SINE MIR -97 165 35 405 0 0 0 chr1 198858756 198858801 -43805552 + (CA)n Simple_repeat Simple_repeat 2 46 0 190 328 16 16 chr1 198858959 198859020 -43805333 - L3 LINE CR1 -8 1569 1509 322 298 157 0 chr1 198859073 198859194 -43805159 + MIR SINE MIR 83 222 -40 400 244 57 3 chr1 198859351 198859486 -43804867 - MIR3 SINE MIR -14 194 47 22 0 0 0 chr1 198860866 198860888 -43803465 + AT_rich Low_complexity Low_complexity 1 22 0 190 167 56 56 chr1 198860940 198860994 -43803359 - L3b LINE CR1 -244 1339 1286 26 30 0 0 chr1 198864335 198864368 -43799985 + AT_rich Low_complexity Low_complexity 1 33 0 2319 92 0 0 chr1 198864739 198865043 -43799310 + AluSx SINE Alu 1 304 -8 2052 114 7 3 chr1 198865497 198865805 -43798548 - AluSx SINE Alu -3 309 1 627 74 53 21 chr1 198866459 198866554 -43797799 + MER4A LTR ERV1 1 98 -566 1889 110 8 62 chr1 198866554 198866919 -43797434 + MER4A LTR ERV1 261 664 0 480 294 38 6 chr1 198867437 198867597 -43796756 - MIR SINE MIR -31 231 67 442 223 0 19 chr1 198867707 198867810 -43796543 - L1 LINE L1 -3175 2971 2871 492 168 116 11 chr1 198867887 198867982 -43796371 - MLT1F1 LTR MaLR 0 567 463 301 248 248 24 chr1 198868511 198868636 -43795717 - MIR3 SINE MIR -32 176 24 548 121 20 61 chr1 198868754 198868853 -43795500 - FAM SINE Alu -8 177 83 348 241 117 35 chr1 198869086 198869231 -43795122 + MER69A DNA AcHobo 10 166 -11 483 217 124 0 chr1 198870750 198870879 -43793474 - L2 LINE L2 -4 3309 3165 232 282 77 13 chr1 198871124 198871202 -43793151 - L2 LINE L2 -218 3054 2972 241 250 12 71 chr1 198872403 198872487 -43791866 + L2 LINE L2 3189 3267 -5 187 194 208 56 chr1 198872769 198872841 -43791512 - MIR SINE MIR -71 137 55 582 319 64 0 chr1 198873000 198873188 -43791165 - MIR SINE MIR -24 238 39 185 355 97 32 chr1 198874388 198874543 -43789810 - MER5A DNA MER1_type -1 188 24 290 339 59 0 chr1 198874858 198874976 -43789377 + L3 LINE CR1 1447 1571 -6 180 286 0 54 chr1 198875350 198875406 -43788947 + L3b LINE CR1 1290 1342 -241 490 263 70 76 chr1 198876100 198876411 -43787942 + L1MDb LINE L1 1159 1463 -4933 1082 285 175 37 chr1 198876449 198876957 -43787396 - MLT1K LTR MaLR 0 588 11 344 310 0 35 chr1 198877053 198877195 -43787158 + HAL1b LINE L1 393 529 -819 882 308 78 40 chr1 198877287 198877538 -43786815 + L2 LINE L2 2496 2736 -577 2783 89 11 8 chr1 198877538 198877910 -43786443 - THE1C LTR MaLR -1 374 2 882 308 78 40 chr1 198877910 198878436 -43785917 + L2 LINE L2 2736 3308 -5 1964 148 3 0 chr1 198878668 198878978 -43785375 + AluSx SINE Alu 1 311 -1 303 28 0 0 chr1 198879109 198879145 -43785208 + (TG)n Simple_repeat Simple_repeat 1 36 0 277 259 107 30 chr1 198879770 198879901 -43784452 + MIR SINE MIR 13 153 -109 1432 337 55 44 chr1 198880557 198881327 -43783026 + ERVL LTR ERVL 814 1574 -4190 2306 145 69 17 chr1 198881327 198881734 -43782619 + MSTB1 LTR MaLR 5 432 0 1432 337 55 44 chr1 198881734 198881887 -43782466 + ERVL LTR ERVL 1574 1751 -4013 1526 86 0 5 chr1 198881887 198882085 -43782268 + AluY SINE Alu 106 302 -9 1432 337 55 44 chr1 198882085 198882168 -43782185 + ERVL LTR ERVL 1751 1832 -3932 1086 146 0 0 chr1 198882313 198882464 -43781889 + AluSg/x SINE Alu 129 279 -33 324 0 0 0 chr1 198882464 198882500 -43781853 + (CA)n Simple_repeat Simple_repeat 1 36 0 1039 272 143 32 chr1 198882692 198883171 -43781182 - MLT1G1 LTR MaLR -18 577 1 2673 230 77 41 chr1 198883477 198883598 -43780755 + L1MDb LINE L1 1641 1756 -4831 1114 176 55 0 chr1 198883598 198883797 -43780556 + MER6B DNA MER2_type 1 210 0 261 0 0 0 chr1 198883802 198883831 -43780522 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2673 230 77 41 chr1 198883831 198884637 -43779716 + L1MDb LINE L1 1759 2608 -3979 249 263 30 20 chr1 198884920 198885019 -43779334 + MER72 LTR ERV1 377 476 -246 565 185 48 41 chr1 198885116 198885262 -43779091 + LTR45B LTR ERV1 343 489 0 1570 204 24 38 chr1 198885351 198885531 -43778822 + L1MDb LINE L1 2632 2813 -3593 2234 118 0 7 chr1 198885531 198885837 -43778516 - AluSx SINE Alu -8 304 1 1570 204 24 38 chr1 198885837 198886050 -43778303 + L1MDb LINE L1 2813 3002 -3404 1419 220 14 57 chr1 198886041 198886460 -43777893 + L1ME1 LINE L1 5719 6119 -47 * 2376 88 0 0 chr1 198886554 198886871 -43777482 - AluSg SINE Alu 0 330 14 477 171 12 0 chr1 198886884 198886966 -43777387 - FLAM_A SINE Alu -14 128 46 316 177 0 16 chr1 198886998 198887060 -43777293 - MER3 DNA MER1_type -3 206 146 454 242 55 0 chr1 198888049 198888177 -43776176 - MIR3 SINE MIR -62 146 12 583 301 44 9 chr1 198888196 198888425 -43775928 + MIR SINE MIR 23 259 -3 240 307 13 0 chr1 198888501 198888576 -43775777 + MER5A DNA MER1_type 34 109 -80 289 282 146 0 chr1 198889374 198889477 -43774876 + L2 LINE L2 3148 3265 -7 22 35 0 0 chr1 198889477 198889506 -43774847 + AT_rich Low_complexity Low_complexity 1 29 0 372 185 0 43 chr1 198889605 198889697 -43774656 - MIR SINE MIR -80 128 41 201 356 85 34 chr1 198890569 198890746 -43773607 - L3 LINE CR1 -61 1516 1331 554 74 0 12 chr1 198891343 198891424 -43772929 + (GGGAA)n Simple_repeat Simple_repeat 3 82 0 391 257 147 0 chr1 198891518 198891654 -43772699 + MIR3 SINE MIR 51 206 -2 229 299 136 14 chr1 198891953 198892100 -43772253 + L2 LINE L2 2594 2758 -556 1565 191 13 13 chr1 198892285 198892583 -43771770 - AluJo SINE Alu -14 298 1 204 118 0 29 chr1 198893689 198893723 -43770630 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 485 235 144 13 chr1 198895086 198895239 -43769114 - MIR SINE MIR 0 262 90 1453 145 24 25 chr1 198896611 198897055 -43767298 + LTR54 LTR ERV1 3 510 0 373 220 96 72 chr1 198898357 198898566 -43765787 + MIR SINE MIR 48 261 -1 2207 85 7 0 chr1 198899276 198899558 -43764795 + AluY SINE Alu 1 284 -27 205 288 0 0 chr1 198899764 198899823 -43764530 + T-rich Low_complexity Low_complexity 1 59 0 191 341 110 17 chr1 198899859 198900032 -43764321 - MIR3 SINE MIR -17 191 3 218 256 0 0 chr1 198900745 198900788 -43763565 + C-rich Low_complexity Low_complexity 2 44 0 392 133 0 0 chr1 198900891 198900951 -43763402 - MER53 DNA DNA -124 65 6 1408 171 0 57 chr1 198901005 198901303 -43763050 + AluJo SINE Alu 1 281 -31 663 119 86 0 chr1 198901318 198901469 -43762884 - MER69 DNA AcHobo -67 2459 2296 793 174 94 0 chr1 198901605 198901754 -43762599 - MER41D LTR ERV1 0 557 395 430 346 22 13 chr1 198902108 198902336 -43762017 - MIR SINE MIR -2 260 31 293 152 15 45 chr1 198902349 198902415 -43761938 - MIR3 SINE MIR -35 173 110 2401 43 7 3 chr1 198902420 198902744 -43761609 - AluY SINE Alu 0 325 1 837 165 213 8 chr1 198902771 198903020 -43761333 - MER69 DNA AcHobo -67 2459 2160 287 295 0 13 chr1 198903186 198903264 -43761089 - MIR3 SINE MIR -118 90 14 374 223 155 0 chr1 198904214 198904317 -43760036 + L2 LINE L2 3194 3312 -1 1902 112 31 14 chr1 198905238 198905524 -43758829 + AluSq SINE Alu 1 291 -22 423 202 0 12 chr1 198905558 198905642 -43758711 + MIR SINE MIR 71 153 -109 265 257 10 59 chr1 198905632 198905733 -43758620 + MIR SINE MIR 51 146 -62 * 217 287 174 17 chr1 198906005 198906120 -43758233 - MIR SINE MIR -59 149 17 2189 89 10 7 chr1 198906732 198907024 -43757329 - AluY SINE Alu -18 293 1 2031 151 16 0 chr1 198907071 198907376 -43756977 + AluSx SINE Alu 1 310 -2 245 264 24 102 chr1 198907447 198907614 -43756739 - L2 LINE L2 -6 3266 3113 617 276 31 5 chr1 198907628 198907820 -43756533 - MIR SINE MIR -36 226 30 259 222 0 0 chr1 198907837 198907891 -43756462 - L2 LINE L2 -257 3056 3003 250 325 0 0 chr1 198908894 198908974 -43755379 - MIR SINE MIR -3 259 180 255 319 64 64 chr1 198909188 198909392 -43754961 + L2 LINE L2 2742 2944 -369 308 304 57 16 chr1 198909597 198909817 -43754536 + L2 LINE L2 2958 3241 -72 199 156 15 230 chr1 198909876 198910011 -43754342 - MIR SINE MIR 0 262 157 437 222 10 0 chr1 198910082 198910181 -43754172 - MIR SINE MIR -133 129 30 290 339 87 45 chr1 198910195 198910323 -43754030 - MIR SINE MIR -1 261 140 1978 111 0 0 chr1 198910323 198910585 -43753768 + AluSg SINE Alu 34 295 -15 290 339 87 45 chr1 198910585 198910698 -43753655 - MIR SINE MIR -122 140 10 288 53 0 0 chr1 198911013 198911051 -43753302 + (TG)n Simple_repeat Simple_repeat 2 39 0 291 301 28 28 chr1 198911228 198911421 -43752932 - MIR SINE MIR -50 212 20 21231 145 24 38 chr1 198911738 198913980 -43750373 + L1M1 LINE L1 159 2430 -5135 2339 70 13 19 chr1 198913980 198914293 -43750060 - AluY SINE Alu 0 311 1 21231 145 24 38 chr1 198914293 198917029 -43747324 + L1M1 LINE L1 2430 5073 -2492 942 166 23 0 chr1 198917036 198917211 -43747142 + L1MA2 LINE L1 4127 4305 -3260 236 184 20 0 chr1 198917202 198917251 -43747102 + L1MA2 LINE L1 4733 4782 -2783 * 9565 148 10 0 chr1 198917255 198919871 -43744482 + L1MA2 LINE L1 5081 7723 0 183 313 31 0 chr1 198920241 198920305 -43744048 + L2 LINE L2 3226 3291 -22 2309 97 0 16 chr1 198920527 198920835 -43743518 - AluSx SINE Alu -9 303 1 2126 114 20 32 chr1 198920857 198921198 -43743155 - MER1B DNA MER1_type 0 337 1 512 238 48 8 chr1 198921471 198921597 -43742756 + MIR SINE MIR 111 241 -21 187 186 17 85 chr1 198921842 198921901 -43742452 + L2 LINE L2 3218 3272 0 1166 204 10 0 chr1 198922589 198922795 -43741558 + AluJo SINE Alu 75 282 -30 2036 81 4 8 chr1 198923416 198923677 -43740676 + AluY SINE Alu 39 298 -13 264 321 54 30 chr1 198924086 198924254 -43740099 - MIR3 SINE MIR -4 204 33 214 351 40 0 chr1 198925222 198925296 -43739057 + L2 LINE L2 3188 3264 -8 235 267 66 28 chr1 198925338 198925498 -43738855 - MIR SINE MIR -17 245 81 199 289 0 0 chr1 198925769 198925814 -43738539 + L2 LINE L2 3210 3254 -18 224 182 0 18 chr1 198925854 198925909 -43738444 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1033 191 150 24 chr1 198926082 198926376 -43737977 + MER96B DNA MER1_type? 85 415 -2 248 303 157 60 chr1 198929273 198929573 -43734780 + L2 LINE L2 2906 3234 -38 243 125 0 0 chr1 198929616 198929656 -43734697 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 304 88 39 chr1 198929720 198929822 -43734531 + MIR3 SINE MIR 101 207 -1 292 224 0 0 chr1 198930089 198930165 -43734188 + C-rich Low_complexity Low_complexity 1 76 0 2117 179 33 14 chr1 198930854 198931274 -43733079 - Charlie4a DNA MER1_type -7 501 74 1987 144 0 0 chr1 198931485 198931791 -43732562 + AluSx SINE Alu 1 306 -6 420 314 119 13 chr1 198932764 198932923 -43731430 - MIR3 SINE MIR 0 208 33 479 296 108 77 chr1 198933018 198933406 -43730947 + L2 LINE L2 2870 3269 -3 216 204 0 0 chr1 198933448 198933492 -43730861 + (TA)n Simple_repeat Simple_repeat 1 44 0 317 234 97 113 chr1 198933513 198933682 -43730671 - MIR3 SINE MIR -62 146 4 527 271 15 34 chr1 198933791 198933970 -43730383 + MIR3 SINE MIR 17 197 -11 229 286 262 24 chr1 198934133 198934259 -43730094 - L2 LINE L2 0 3272 3117 1564 153 24 21 chr1 198934479 198934766 -43729587 + AluJb SINE Alu 14 301 -11 1846 81 8 11 chr1 198934818 198935079 -43729274 + AluY SINE Alu 39 298 -13 253 143 0 48 chr1 198935561 198935624 -43728729 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 447 154 54 54 chr1 198936753 198936902 -43727451 - L1ME4a LINE L1 -7 6114 5966 334 275 67 33 chr1 198936904 198937024 -43727329 + MIR SINE MIR 49 172 -90 1326 168 157 4 chr1 198937424 198937686 -43726667 - AluJb SINE Alu 0 302 1 632 265 31 89 chr1 198938012 198938269 -43726084 - MIR SINE MIR -1 261 20 291 235 201 34 chr1 198938351 198938533 -43725820 + MIR SINE MIR 44 252 -10 * 655 286 69 16 chr1 198938484 198938729 -43725624 - MIR SINE MIR -3 259 2 276 238 9 86 chr1 198938991 198939050 -43725303 + MIR3 SINE MIR 77 126 -82 2940 150 48 15 chr1 198939050 198939591 -43724762 + MER89 LTR ERV1 1 559 0 276 238 9 86 chr1 198939591 198939636 -43724717 + MIR3 SINE MIR 126 173 -35 443 254 109 81 chr1 198939649 198939933 -43724420 - LTR67 LTR ERVL -264 293 2 283 289 40 59 chr1 198940577 198940729 -43723624 - MIR3 SINE MIR -14 194 46 759 176 15 0 chr1 198940731 198940862 -43723491 + AluJ SINE Alu 1 133 -169 502 218 64 0 chr1 198940874 198940984 -43723369 + AluJ SINE Alu 185 301 -11 286 209 118 9 chr1 198941018 198941128 -43723225 + L1ME LINE L1 4137 4258 -1888 1419 204 28 0 chr1 198941139 198941424 -43722929 + AluJb SINE Alu 6 298 -14 2226 234 31 19 chr1 198941425 198942105 -43722248 + L1ME LINE L1 4261 4948 -1198 277 71 0 83 chr1 198942113 198942197 -43722156 + (CAAAAA)n Simple_repeat Simple_repeat 3 79 0 1973 198 69 53 chr1 198942199 198942996 -43721357 + L1ME LINE L1 4954 5775 -391 626 211 0 0 chr1 198942999 198943132 -43721221 + L1MA10 LINE L1 6199 6331 -3 22 0 0 0 chr1 198943442 198943464 -43720889 + AT_rich Low_complexity Low_complexity 1 22 0 1501 163 51 7 chr1 198944012 198944306 -43720047 + AluSq SINE Alu 1 307 -6 230 114 136 23 chr1 198944706 198944750 -43719603 + LTR8 LTR ERV1 1 49 -642 2498 226 19 78 chr1 198944753 198945471 -43718882 + LTR8 LTR ERV1 16 691 0 575 273 104 58 chr1 198945758 198946505 -43717848 + L1MEc LINE L1 860 1641 -4755 1839 212 66 45 chr1 198946574 198946836 -43717517 - MLT2B1 LTR ERVL 0 464 199 1741 179 0 10 chr1 198946836 198947149 -43717204 - AluJb SINE Alu -2 310 1 1839 212 66 45 chr1 198947149 198947353 -43717000 - MLT2B1 LTR ERVL -265 199 1 4187 160 64 57 chr1 198947356 198947710 -43716643 + L1MB7 LINE L1 4641 4991 -1193 1958 150 3 3 chr1 198947710 198948017 -43716336 + AluJb SINE Alu 1 307 -5 4187 160 64 57 chr1 198948017 198948179 -43716174 + L1MB7 LINE L1 4991 5150 -1034 1802 143 7 42 chr1 198948179 198948487 -43715866 + AluSx SINE Alu 1 297 -15 4187 160 64 57 chr1 198948487 198948561 -43715792 + L1MB7 LINE L1 5150 5222 -962 2294 140 60 29 chr1 198948561 198948934 -43715419 + MSTA LTR MaLR 1 390 -38 2276 61 7 3 chr1 198948934 198949229 -43715124 - AluY SINE Alu -15 296 1 2294 140 60 29 chr1 198949229 198949270 -43715083 + MSTA LTR MaLR 390 428 0 4187 160 64 57 chr1 198949270 198950220 -43714133 + L1MB7 LINE L1 5222 6184 0 22 99 0 0 chr1 198950675 198950746 -43713607 + AT_rich Low_complexity Low_complexity 1 71 0 579 165 83 9 chr1 198950746 198950855 -43713498 - FLAM_C SINE Alu -15 118 2 802 243 25 87 chr1 198950858 198951134 -43713219 - MIR SINE MIR -2 260 2 423 300 28 39 chr1 198951153 198951333 -43713020 + MIR SINE MIR 34 211 -51 212 135 0 19 chr1 198952640 198952692 -43711661 + (TG)n Simple_repeat Simple_repeat 1 51 0 3352 124 5 81 chr1 198952759 198952823 -43711530 + MER1A DNA MER1_type 2 69 -2633 2191 102 0 10 chr1 198952823 198953137 -43711216 + AluY SINE Alu 1 311 0 3352 124 5 81 chr1 198953137 198953647 -43710706 + MER1A DNA MER1_type 69 529 0 198 109 127 91 chr1 198954062 198954081 -43710272 - L3 LINE CR1 -75 1502 1485 956 302 24 29 chr1 198954081 198954492 -43709861 - MLT1I LTR MaLR 0 409 1 198 109 127 91 chr1 198954492 198954527 -43709826 - L3 LINE CR1 -92 1485 1446 200 119 0 48 chr1 198955043 198955085 -43709268 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 306 251 144 36 chr1 198955409 198955604 -43708749 - L1ME4a LINE L1 -42 6079 5864 237 314 64 58 chr1 198956014 198956186 -43708167 - MIR3 SINE MIR -16 192 20 3203 217 60 22 chr1 198956499 198957064 -43707289 - MER21B LTR ERV1 -69 794 193 219 69 0 0 chr1 198957064 198957093 -43707260 + (GGGTG)n Simple_repeat Simple_repeat 1 29 0 3203 217 60 22 chr1 198957093 198957260 -43707093 - MER21B LTR ERV1 -670 193 34 286 263 202 45 chr1 198957287 198957485 -43706868 - L2 LINE L2 0 3272 3044 1532 149 110 51 chr1 198957579 198958084 -43706269 + Tigger7 DNA MER2_type 1 2487 0 283 354 0 10 chr1 198958729 198958828 -43705525 + L2 LINE L2 2964 3061 -211 2533 146 55 0 chr1 198958903 198959306 -43705047 - MSTC LTR MaLR 0 428 4 1040 202 33 67 chr1 198959402 198959738 -43704615 - L1MB7 LINE L1 -1 6183 5852 504 303 31 12 chr1 198959788 198959950 -43704403 + MIR SINE MIR 3 167 -95 968 170 55 0 chr1 198961082 198961247 -43703106 - MER20 DNA MER1_type 0 219 46 427 203 136 130 chr1 198961411 198961516 -43702837 - MER5A DNA MER1_type -3 186 78 1802 161 7 3 chr1 198961516 198961814 -43702539 - AluJb SINE Alu -13 299 1 427 203 136 130 chr1 198961814 198961885 -43702468 - MER5A DNA MER1_type -111 78 9 214 269 269 10 chr1 198961925 198962029 -43702324 - MIR SINE MIR -117 145 15 1148 213 105 45 chr1 198962851 198963165 -43701188 - MER58B DNA MER1_type -8 333 1 241 143 0 0 chr1 198963192 198963234 -43701119 + MER103 DNA DNA 8 49 -117 388 311 37 22 chr1 198963933 198964068 -43700285 - MIR SINE MIR -123 139 3 1820 133 6 44 chr1 198964632 198964948 -43699405 + AluSx SINE Alu 1 304 -8 330 224 0 0 chr1 198965187 198965272 -43699081 + GA-rich Low_complexity Low_complexity 4 88 0 247 206 55 55 chr1 198966401 198966474 -43697879 - MIR SINE MIR -80 182 110 386 319 32 38 chr1 198967942 198968127 -43696226 + MIR3 SINE MIR 9 192 -16 553 272 30 6 chr1 198968420 198968589 -43695764 + MIR SINE MIR 23 195 -67 189 0 0 0 chr1 198969155 198969176 -43695177 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 201 327 44 53 chr1 198970105 198970218 -43694135 + L2 LINE L2 3193 3304 -9 183 222 0 0 chr1 198970396 198970432 -43693921 + L2 LINE L2 3263 3298 -15 183 277 106 0 chr1 198972570 198972617 -43691736 + L2 LINE L2 3212 3263 -9 202 145 0 97 chr1 198972714 198972776 -43691577 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 208 280 100 0 chr1 198973736 198973786 -43690567 - L2 LINE L2 -9 3263 3209 223 277 0 0 chr1 198973812 198973877 -43690476 + G-rich Low_complexity Low_complexity 1 65 0 343 281 217 21 chr1 198975327 198975562 -43688791 + L3 LINE CR1 1225 1505 -72 22 35 0 0 chr1 198975782 198975811 -43688542 + AT_rich Low_complexity Low_complexity 1 29 0 502 317 86 26 chr1 198976961 198977346 -43687007 - MLT1J LTR MaLR -34 477 70 201 211 18 35 chr1 198977669 198977726 -43686627 + C-rich Low_complexity Low_complexity 4 59 0 556 314 64 0 chr1 198978599 198978771 -43685582 + MIR SINE MIR 31 213 -49 257 327 50 69 chr1 198979005 198979164 -43685189 + L2 LINE L2 3107 3262 -10 579 124 62 0 chr1 198979425 198979522 -43684831 - Charlie5 DNA MER1_type 0 2624 2522 307 262 21 110 chr1 198980244 198980389 -43683964 + L2 LINE L2 3020 3151 -121 317 329 30 0 chr1 198982226 198982390 -43681963 + (CCCCAG)n Simple_repeat Simple_repeat 5 173 0 686 139 16 0 chr1 198982409 198982531 -43681822 + CT-rich Low_complexity Low_complexity 1 124 0 1812 151 35 3 chr1 198982531 198982816 -43681537 - AluJb SINE Alu -7 305 12 236 369 21 7 chr1 198982844 198982985 -43681368 + (CCCCAG)n Simple_repeat Simple_repeat 1 143 0 202 261 0 0 chr1 198983203 198983249 -43681104 - L2 LINE L2 0 3272 3227 245 185 0 46 chr1 198983411 198983476 -43680877 - L2 LINE L2 -218 3054 2993 275 385 0 23 chr1 198984861 198984991 -43679362 - MER5A DNA MER1_type -18 171 45 1560 297 99 32 chr1 198985531 198985725 -43678628 + L2 LINE L2 1500 1680 -1634 1642 191 31 0 chr1 198985725 198986019 -43678334 - AluJb SINE Alu -9 303 1 1560 297 99 32 chr1 198986019 198986716 -43677637 + L2 LINE L2 1680 2450 -864 336 24 0 0 chr1 198986752 198986793 -43677560 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr1 198986814 198986836 -43677517 + (TATG)n Simple_repeat Simple_repeat 2 23 0 726 221 7 0 chr1 198986972 198987121 -43677232 - Zaphod DNA AcHobo -1 4030 3881 472 304 120 41 chr1 198987172 198987419 -43676934 - MER115 DNA AcHobo -266 427 144 2104 129 0 3 chr1 198987419 198987706 -43676647 + AluJb SINE Alu 5 290 -22 472 304 120 41 chr1 198987706 198987800 -43676553 - MER115 DNA AcHobo -549 144 59 362 268 186 39 chr1 198988188 198988274 -43676079 - L2 LINE L2 -183 3089 3017 2316 107 0 0 chr1 198988274 198988573 -43675780 + AluSx SINE Alu 1 299 -13 362 268 186 39 chr1 198988573 198988888 -43675465 - L2 LINE L2 -255 3017 2618 1710 183 0 0 chr1 198989420 198989688 -43674665 + AluJo SINE Alu 1 268 -44 370 308 9 19 chr1 198990522 198990629 -43673724 + MIR3 SINE MIR 77 182 -26 278 308 107 41 chr1 198990928 198991097 -43673256 + MIR SINE MIR 37 216 -46 441 210 28 33 chr1 198991706 198991929 -43672424 + (TG)n Simple_repeat Simple_repeat 1 221 0 422 165 26 33 chr1 198991940 198992680 -43671673 + (TG)n Simple_repeat Simple_repeat 1 735 0 383 171 23 17 chr1 198992698 198992874 -43671479 + (TG)n Simple_repeat Simple_repeat 1 177 0 467 159 32 17 chr1 198992908 198993264 -43671089 + (TG)n Simple_repeat Simple_repeat 1 361 0 407 141 30 26 chr1 198993284 198993528 -43670825 + (TG)n Simple_repeat Simple_repeat 1 245 0 377 154 40 17 chr1 198993582 198993757 -43670596 + (TG)n Simple_repeat Simple_repeat 2 180 0 950 111 0 0 chr1 198993857 198993983 -43670370 - AluSg SINE Alu -184 126 1 202 295 82 0 chr1 198994077 198994138 -43670215 - L2 LINE L2 0 3313 3248 2138 121 17 3 chr1 198995356 198995653 -43668700 + AluSg SINE Alu 1 301 -9 339 286 24 8 chr1 198995969 198996095 -43668258 + GA-rich Low_complexity Low_complexity 4 131 0 269 91 0 45 chr1 198996095 198996139 -43668214 - Charlie3 DNA MER1_type -190 2520 2479 198 286 196 18 chr1 198996985 198997153 -43667200 + MIR3 SINE MIR 5 202 -6 195 265 255 29 chr1 198997543 198997645 -43666708 + MIR SINE MIR 22 146 -62 215 200 44 0 chr1 198998317 198998362 -43665991 - MER91B DNA MER1_type -18 172 126 297 248 101 78 chr1 198998631 198998760 -43665593 - MER91B DNA MER1_type -58 132 1 618 323 35 31 chr1 198998858 198999112 -43665241 + MIR SINE MIR 2 256 -6 231 36 0 0 chr1 198999216 198999244 -43665109 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 822 326 14 36 chr1 199000635 199001052 -43663301 - HERV16 LTR ERVL -1296 4358 3951 3045 289 53 25 chr1 199001092 199003319 -43661034 - HERV16 LTR ERVL -1889 3875 1313 2324 108 0 13 chr1 199003319 199003624 -43660729 + AluSx SINE Alu 1 301 -11 3045 289 53 25 chr1 199003624 199004416 -43659937 - HERV16 LTR ERVL -4451 1313 545 180 336 104 30 chr1 199005011 199005145 -43659208 - L2 LINE L2 -9 3304 3161 761 317 73 17 chr1 199005248 199005548 -43658805 - L3 LINE CR1 -7 1570 1254 2508 134 20 2 chr1 199005574 199005970 -43658383 + MER57A LTR ERV1 1 403 0 303 331 68 7 chr1 199006023 199006171 -43658182 - MIR SINE MIR -3 259 103 375 328 86 0 chr1 199006464 199006592 -43657761 - L2 LINE L2 0 3272 3134 413 250 104 49 chr1 199007065 199007229 -43657124 - MIR SINE MIR -31 231 59 322 224 124 43 chr1 199007395 199007556 -43656797 - MLT1J2 LTR MaLR -24 426 249 256 183 75 43 chr1 199007604 199007697 -43656656 - MLT1J LTR MaLR -311 200 105 2136 226 72 17 chr1 199008135 199008678 -43655675 + MLT1E LTR MaLR 21 593 0 1930 174 101 12 chr1 199008708 199009134 -43655219 - MLT1C LTR MaLR -3 464 1 360 206 163 0 chr1 199009646 199009738 -43654615 + MER94 DNA DNA 26 132 -2 343 271 154 40 chr1 199011399 199011672 -43652681 + L1M4 LINE L1 4980 5283 -863 2219 120 0 0 chr1 199011716 199012016 -43652337 + AluSc SINE Alu 3 302 -7 906 188 79 0 chr1 199013434 199013599 -43650754 + MER45A DNA AcHobo 1 178 0 2362 170 54 2 chr1 199013609 199014014 -43650339 - MSTB LTR MaLR 0 426 1 260 337 111 12 chr1 199018181 199018353 -43646000 - MIR3 SINE MIR -1 207 19 491 330 39 11 chr1 199018386 199018568 -43645785 + MIR3 SINE MIR 7 193 -15 2033 150 23 0 chr1 199018891 199019191 -43645162 - AluSx SINE Alu -1 311 5 249 336 71 9 chr1 199020088 199020201 -43644152 + L3b LINE CR1 1370 1489 -94 217 217 142 67 chr1 199020310 199020430 -43643923 + L2 LINE L2 3179 3307 -6 474 273 32 107 chr1 199021219 199021435 -43642918 - MIR3 SINE MIR -4 204 5 283 226 95 0 chr1 199021909 199021993 -43642360 + MER103 DNA DNA 17 108 -58 1224 196 14 0 chr1 199022134 199022353 -43642000 - MER58A DNA MER1_type -2 222 1 432 234 64 63 chr1 199023161 199023321 -43641032 - MIR SINE MIR -37 225 65 423 119 0 0 chr1 199023438 199023505 -43640848 + (TC)n Simple_repeat Simple_repeat 2 68 0 784 153 0 29 chr1 199024327 199024464 -43639889 + FLAM_C SINE Alu 1 133 -10 188 243 0 0 chr1 199024929 199024966 -43639387 - MIR SINE MIR -114 148 112 1974 137 13 19 chr1 199025379 199025693 -43638660 - AluSx SINE Alu 0 312 1 313 289 33 0 chr1 199027212 199027302 -43637051 + MIR SINE MIR 42 134 -74 488 314 176 0 chr1 199027453 199027498 -43636855 - MIR SINE MIR -19 243 207 1861 152 7 20 chr1 199027498 199027801 -43636552 - AluJo SINE Alu -13 299 1 488 314 176 0 chr1 199027801 199027959 -43636394 - MIR SINE MIR -55 207 4 1478 212 120 43 chr1 199028113 199028579 -43635774 + MLT1D LTR MaLR 3 504 -1 314 349 40 7 chr1 199028591 199028743 -43635610 - MIR3 SINE MIR -9 199 43 259 308 38 31 chr1 199028959 199029090 -43635263 - MIR SINE MIR -69 139 35 246 62 0 0 chr1 199029172 199029204 -43635149 + (TG)n Simple_repeat Simple_repeat 2 33 0 2150 101 20 3 chr1 199030493 199030799 -43633554 + L1PA10 LINE L1 5857 6167 -1 288 238 138 0 chr1 199031626 199031706 -43632647 - MIR SINE MIR -108 154 64 601 241 42 30 chr1 199032354 199032520 -43631833 + MIR SINE MIR 45 212 -50 185 287 35 69 chr1 199033276 199033363 -43630990 + MIR SINE MIR 16 99 -109 183 345 25 42 chr1 199033429 199033548 -43630805 - MIR SINE MIR -70 192 76 2130 123 0 0 chr1 199033900 199034202 -43630151 - AluSg SINE Alu -8 302 1 650 301 75 5 chr1 199034341 199034540 -43629813 + MIR SINE MIR 4 216 -46 379 305 73 18 chr1 199035086 199035250 -43629103 + MIR SINE MIR 80 252 -10 575 264 37 82 chr1 199037037 199037306 -43627047 + MIR SINE MIR 1 257 -5 185 71 0 0 chr1 199037350 199037378 -43626975 + MIR SINE MIR 109 136 -72 282 315 49 27 chr1 199037472 199037656 -43626697 - L2 LINE L2 -3 3310 3123 245 329 47 32 chr1 199038149 199038324 -43626029 + MIR3 SINE MIR 34 210 -31 1766 139 36 7 chr1 199038376 199038678 -43625675 + AluSx SINE Alu 1 311 -1 495 296 143 5 chr1 199040029 199040245 -43624108 - L3 LINE CR1 -3 1574 1329 295 295 97 78 chr1 199040242 199040500 -43623853 - L2 LINE L2 0 3272 3010 * 982 153 0 0 chr1 199043377 199043534 -43620819 + FRAM SINE Alu 7 163 -13 1882 142 28 0 chr1 199044232 199044520 -43619833 + AluSx SINE Alu 1 296 -16 360 276 98 11 chr1 199046179 199046350 -43618003 + MIR SINE MIR 11 192 -70 185 274 68 14 chr1 199046934 199047007 -43617346 + L3b LINE CR1 1339 1415 -168 183 42 0 0 chr1 199047485 199047509 -43616844 + (TTG)n Simple_repeat Simple_repeat 2 25 0 213 237 17 17 chr1 199048448 199048507 -43615846 + CT-rich Low_complexity Low_complexity 2 60 0 190 309 0 0 chr1 199048781 199048823 -43615530 - MIR SINE MIR -65 143 102 2428 59 0 0 chr1 199048823 199049128 -43615225 - AluY SINE Alu -6 305 1 1757 153 3 38 chr1 199049130 199049444 -43614909 - AluSx SINE Alu -9 303 1 1826 149 13 7 chr1 199049937 199050246 -43614107 - AluJb SINE Alu -1 311 1 839 134 8 15 chr1 199051368 199051529 -43612824 - FLAM_C SINE Alu 0 160 1 2261 75 7 0 chr1 199052180 199052472 -43611881 + AluSc SINE Alu 1 294 -15 223 119 24 36 chr1 199053600 199053684 -43610669 + (CA)n Simple_repeat Simple_repeat 1 83 0 338 242 176 62 chr1 199054176 199054449 -43609904 + L1ME4a LINE L1 4980 5283 -863 2208 87 0 0 chr1 199054493 199054772 -43609581 + AluSg SINE Alu 3 284 -26 780 11 0 0 chr1 199054772 199054861 -43609492 + (CAATA)n Simple_repeat Simple_repeat 2 90 0 243 182 0 0 chr1 199054881 199054925 -43609428 + L1M2 LINE L1 5616 5659 -638 220 281 45 11 chr1 199055024 199055113 -43609240 + L2 LINE L2 3216 3307 -6 391 247 120 27 chr1 199055123 199055273 -43609080 + L1ME4a LINE L1 5707 5870 -251 1264 149 5 0 chr1 199056526 199056714 -43607639 - MER5A DNA MER1_type 0 189 1 365 265 166 28 chr1 199057335 199057727 -43606626 - L1ME4a LINE L1 -5 6116 5671 229 266 113 28 chr1 199057849 199058026 -43606327 - L1ME4a LINE L1 -2319 5489 5298 1068 169 40 30 chr1 199058568 199058769 -43605584 + MLT1D LTR MaLR 1 203 -302 22 35 0 0 chr1 199058785 199058814 -43605539 + AT_rich Low_complexity Low_complexity 1 29 0 1211 258 82 130 chr1 199058821 199059966 -43604387 - HAL1 LINE L1 -1414 1093 4 2367 193 102 20 chr1 199060056 199060651 -43603702 + LTR48B LTR ERV1 1 644 0 1955 190 81 36 chr1 199061032 199061479 -43602874 - MLT1C LTR MaLR 0 467 1 717 274 66 25 chr1 199061516 199061757 -43602596 + MIR SINE MIR 12 262 0 204 222 0 0 chr1 199062242 199062259 -43602094 + T-rich Low_complexity Low_complexity 1 17 -28 1728 108 0 12 chr1 199062259 199062510 -43601843 - AluSx SINE Alu -64 248 1 204 222 0 0 chr1 199062510 199062537 -43601816 + T-rich Low_complexity Low_complexity 16 45 0 2015 102 72 13 chr1 199062538 199062842 -43601511 - L1PA11 LINE L1 -1 6173 5852 451 310 132 8 chr1 199062939 199063197 -43601156 - HAL1 LINE L1 -590 1917 1628 541 303 67 67 chr1 199063198 199063658 -43600695 + L1MB7 LINE L1 2620 3079 -3067 2154 95 0 0 chr1 199063658 199063943 -43600410 + AluSg SINE Alu 11 295 -15 541 303 67 67 chr1 199063943 199064596 -43599757 + L1MB7 LINE L1 3078 3733 -2413 737 203 0 0 chr1 199064653 199064781 -43599572 + AluJb SINE Alu 1 128 -184 687 168 0 0 chr1 199064881 199064988 -43599365 + AluJb SINE Alu 185 291 -21 1074 287 102 64 chr1 199065016 199065886 -43598467 + L1MB7 LINE L1 3833 4746 -1400 2163 113 0 0 chr1 199065886 199066187 -43598166 + AluSx SINE Alu 1 301 -11 1074 287 102 64 chr1 199066187 199066294 -43598059 + L1MB7 LINE L1 4746 4847 -1299 720 150 50 106 chr1 199066393 199066553 -43597800 + MLT1A1 LTR MaLR 169 319 -46 639 274 29 68 chr1 199066553 199067034 -43597319 + L1MB7 LINE L1 4981 5440 -722 1791 161 3 0 chr1 199067034 199067320 -43597033 + L1PA15 LINE L1 5879 6165 0 26 0 0 0 chr1 199067327 199067353 -43597000 + AT_rich Low_complexity Low_complexity 1 26 0 235 334 57 13 chr1 199067767 199067927 -43596426 + MIR SINE MIR 38 206 -56 3391 703 63 173 chr1 199067940 199068164 -43596189 + L1MB7 LINE L1 5421 5668 -516 1545 182 3 36 chr1 199068164 199068472 -43595881 - AluJo SINE Alu -14 298 1 3391 703 63 173 chr1 199068472 199068706 -43595647 + L1MB7 LINE L1 5668 5926 -258 3391 148 36 39 chr1 199068706 199069097 -43595256 + L1MB7 LINE L1 5518 5909 -275 2124 146 33 3 chr1 199069097 199069433 -43594920 - MER7A DNA MER2_type 0 346 3 3391 148 36 39 chr1 199069433 199069655 -43594698 + L1MB7 LINE L1 5909 6131 -53 2250 97 0 0 chr1 199069655 199069954 -43594399 + AluSc SINE Alu 9 307 -2 3391 148 36 39 chr1 199069954 199070006 -43594347 + L1MB7 LINE L1 6131 6182 -2 3391 703 63 173 chr1 199070006 199070097 -43594256 + L1MB7 LINE L1 5926 6182 -2 372 22 0 0 chr1 199070350 199070395 -43593958 + (CA)n Simple_repeat Simple_repeat 2 46 0 311 315 60 79 chr1 199070498 199070714 -43593639 - HAL1 LINE L1 -2294 213 2 848 264 42 13 chr1 199070743 199070982 -43593371 - MIR SINE MIR 0 262 17 796 198 19 19 chr1 199071101 199071263 -43593090 + LTR65 LTR ERV1 1 162 -507 266 275 108 42 chr1 199071246 199071366 -43592987 + MER90 LTR ERV1 250 377 -198 * 382 268 27 25 chr1 199071404 199071599 -43592754 + LTR65 LTR ERV1 405 650 -19 237 83 0 0 chr1 199072411 199072447 -43591906 + (TTA)n Simple_repeat Simple_repeat 1 36 0 270 352 133 0 chr1 199072542 199072647 -43591706 - MIR SINE MIR -57 151 33 377 302 89 72 chr1 199073367 199073917 -43590436 + L2 LINE L2 2632 3184 -88 2169 92 3 3 chr1 199073917 199074212 -43590141 - AluSc SINE Alu -14 295 1 377 302 89 72 chr1 199074212 199074244 -43590109 + L2 LINE L2 3184 3214 -58 217 277 0 0 chr1 199074291 199074338 -43590015 - L2 LINE L2 -8 3264 3218 263 237 92 13 chr1 199074424 199074500 -43589853 + MIR SINE MIR 175 256 -6 2154 131 0 0 chr1 199074556 199074868 -43589485 - AluSx SINE Alu 0 312 1 277 270 20 50 chr1 199074901 199075001 -43589352 - MIR SINE MIR -164 98 2 233 352 0 0 chr1 199075501 199075572 -43588781 + GA-rich Low_complexity Low_complexity 4 74 0 398 351 58 0 chr1 199075615 199075769 -43588584 - MIR SINE MIR -68 194 32 409 272 64 24 chr1 199076075 199076200 -43588153 + MIR3 SINE MIR 15 144 -64 2072 143 8 36 chr1 199077855 199078220 -43586133 - THE1A LTR MaLR 0 355 1 200 204 23 0 chr1 199080429 199080473 -43583880 + CT-rich Low_complexity Low_complexity 1 45 0 2198 125 3 0 chr1 199081667 199081971 -43582382 - AluSx SINE Alu -7 305 1 340 313 83 65 chr1 199082037 199082516 -43581837 + L2 LINE L2 1552 2039 -1275 214 422 18 0 chr1 199082606 199082772 -43581581 - L2 LINE L2 -259 3054 2886 405 287 74 40 chr1 199082865 199083123 -43581230 - L2 LINE L2 -1309 2005 1734 776 262 5 0 chr1 199083123 199083329 -43581024 - MER3 DNA MER1_type -2 207 1 405 287 74 40 chr1 199083329 199083366 -43580987 - L2 LINE L2 -1580 1734 1700 427 339 127 16 chr1 199083438 199083886 -43580467 + L2 LINE L2 2074 2571 -743 419 259 14 2 chr1 199083993 199084103 -43580250 + MLT1L LTR MaLR 115 290 -310 335 192 86 38 chr1 199084231 199084346 -43580007 + MLT1L LTR MaLR 467 613 -2 291 316 164 41 chr1 199084347 199084664 -43579689 + L2 LINE L2 2622 2977 -337 308 294 130 22 chr1 199085034 199085231 -43579122 + MIR SINE MIR 33 252 -10 395 352 19 0 chr1 199085515 199085677 -43578676 - L2 LINE L2 -207 3065 2901 249 397 49 11 chr1 199085961 199086311 -43578042 + L2 LINE L2 2337 2699 -615 217 329 13 34 chr1 199087444 199087593 -43576760 + L2 LINE L2 2554 2699 -615 226 246 140 44 chr1 199088167 199088281 -43576072 - MIR SINE MIR -3 259 135 192 209 0 0 chr1 199088433 199088476 -43575877 - MIR SINE MIR -209 53 11 208 231 0 0 chr1 199088489 199088528 -43575825 + polypyrimidine Low_complexity Low_complexity 3 41 0 305 109 18 0 chr1 199088528 199088583 -43575770 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 253 219 0 0 chr1 199088609 199088673 -43575680 + (TA)n Simple_repeat Simple_repeat 1 64 0 216 97 0 0 chr1 199088773 199088804 -43575549 + (TA)n Simple_repeat Simple_repeat 1 31 0 219 333 13 0 chr1 199088879 199088957 -43575396 + L3 LINE CR1 1492 1570 -7 470 280 69 11 chr1 199089933 199090122 -43574231 - MIR SINE MIR -12 250 51 197 33 33 0 chr1 199093133 199093163 -43571190 + (CA)n Simple_repeat Simple_repeat 1 31 0 224 342 9 9 chr1 199093901 199094012 -43570341 + (CTGGGG)n Simple_repeat Simple_repeat 1 111 0 825 142 8 8 chr1 199095096 199095223 -43569130 + FLAM_C SINE Alu 1 127 -16 217 279 0 29 chr1 199096477 199096545 -43567808 + G-rich Low_complexity Low_complexity 2 67 0 572 269 74 53 chr1 199098310 199098517 -43565836 - MIR SINE MIR -38 224 14 228 111 0 0 chr1 199098814 199098850 -43565503 + (CAGGG)n Simple_repeat Simple_repeat 4 39 0 322 277 84 17 chr1 199099383 199099502 -43564851 + MIR SINE MIR 6 132 -130 230 95 0 71 chr1 199099733 199099775 -43564578 + MIR SINE MIR 150 188 -74 492 300 132 5 chr1 199105164 199105384 -43558969 - MIR SINE MIR 0 262 15 1263 141 29 66 chr1 199106705 199106778 -43557575 - MSTB LTR MaLR 0 426 352 1798 166 4 0 chr1 199106778 199107096 -43557257 + AluJb SINE Alu 6 324 0 1263 141 29 66 chr1 199107096 199107263 -43557090 - MSTB LTR MaLR -74 352 194 481 169 0 11 chr1 199107277 199107366 -43556987 + MER99 DNA DNA 420 507 -321 324 211 28 0 chr1 199107368 199107439 -43556914 - MSTB LTR MaLR -4 424 352 984 149 48 6 chr1 199107443 199107611 -43556742 - MSTB LTR MaLR -251 175 1 * 1040 205 5 14 chr1 199107611 199107796 -43556557 + MER99 DNA DNA 503 685 -143 504 289 106 53 chr1 199107796 199108267 -43556086 + L2 LINE L2 1191 1686 -1628 455 266 140 0 chr1 199108323 199108466 -43555887 - HAL1 LINE L1 -2340 167 5 818 310 47 50 chr1 199108470 199109087 -43555266 + L2 LINE L2 1822 2436 -878 531 261 83 17 chr1 199109193 199109373 -43554980 + MIR SINE MIR 70 261 -1 291 276 31 31 chr1 199109379 199109506 -43554847 + L2 LINE L2 2591 2717 -597 399 303 26 13 chr1 199109601 199109753 -43554600 - L2 LINE L2 -1 3312 3159 322 299 84 0 chr1 199109918 199110025 -43554328 + L2 LINE L2 2935 3050 -222 451 219 0 29 chr1 199110097 199110202 -43554151 - U13 snRNA snRNA -2 102 1 220 232 43 29 chr1 199110259 199110328 -43554025 + L2 LINE L2 3203 3272 0 2580 43 3 7 chr1 199112325 199112629 -43551724 - AluY SINE Alu -8 303 1 5417 45 8 1 chr1 199112637 199113296 -43551057 - L1PA7 LINE L1 0 6154 5492 347 295 257 37 chr1 199113454 199113668 -43550685 - L3 LINE CR1 -251 1326 1160 2372 103 0 0 chr1 199113668 199113979 -43550374 + AluY SINE Alu 1 311 0 347 295 257 37 chr1 199113979 199114387 -43549966 - L3 LINE CR1 -417 1160 567 450 168 290 0 chr1 199114441 199114572 -43549781 - MER5A DNA MER1_type -20 169 1 21 0 0 0 chr1 199117585 199117606 -43546747 + AT_rich Low_complexity Low_complexity 1 21 0 206 218 18 18 chr1 199118253 199118308 -43546045 + L2 LINE L2 3258 3312 -1 281 268 0 0 chr1 199123220 199123291 -43541062 + L2 LINE L2 3242 3312 -1 2075 100 32 19 chr1 199123781 199124090 -43540263 + AluSp SINE Alu 1 313 0 2507 59 7 0 chr1 199125299 199125603 -43538750 - AluSc SINE Alu -3 306 1 253 281 8 78 chr1 199125744 199125872 -43538481 + MIR SINE MIR 88 206 -56 217 188 83 0 chr1 199125906 199125954 -43538399 - MIR3 SINE MIR -49 159 108 198 0 0 0 chr1 199127043 199127065 -43537288 + (TA)n Simple_repeat Simple_repeat 1 22 0 877 234 55 0 chr1 199127368 199127586 -43536767 + MIR SINE MIR 3 232 -30 2071 88 0 97 chr1 199128567 199128896 -43535457 + AluYa8 SINE Alu 1 297 -13 183 100 0 0 chr1 199128920 199128950 -43535403 + (T)n Simple_repeat Simple_repeat 1 30 0 352 278 59 5 chr1 199129240 199129363 -43534990 - L1MC/D LINE L1 -370 5751 5663 252 315 42 28 chr1 199129831 199129974 -43534379 + MIR3 SINE MIR 3 147 -61 27 62 0 0 chr1 199129990 199130038 -43534315 + AT_rich Low_complexity Low_complexity 1 48 0 944 144 14 0 chr1 199130055 199130194 -43534159 - AluJb SINE Alu -171 141 1 281 318 18 18 chr1 199131601 199131711 -43532642 + MIR SINE MIR 36 145 -63 1272 166 48 59 chr1 199132197 199132361 -43531992 - AluJo SINE Alu 0 305 141 246 95 0 0 chr1 199132361 199132403 -43531950 + (TA)n Simple_repeat Simple_repeat 2 43 0 1272 166 48 59 chr1 199132403 199132424 -43531929 - AluJo SINE Alu -164 141 121 838 116 0 11 chr1 199132424 199132605 -43531748 + (TA)n Simple_repeat Simple_repeat 2 180 0 1272 166 48 59 chr1 199132605 199132712 -43531641 - AluJo SINE Alu -184 121 15 786 219 26 37 chr1 199133548 199133818 -43530535 + LTR37B LTR ERV1 193 459 -9 346 216 0 27 chr1 199134846 199134920 -43529433 + MER5A DNA MER1_type 9 80 -109 1353 231 0 0 chr1 199134930 199135211 -43529142 + AluJb SINE Alu 14 294 -18 219 237 17 17 chr1 199135262 199135321 -43529032 + MER5A DNA MER1_type 128 186 -3 31 0 0 0 chr1 199135658 199135689 -43528664 + AT_rich Low_complexity Low_complexity 1 31 0 1670 155 72 13 chr1 199136339 199136643 -43527710 + L1PA11 LINE L1 5852 6173 -1 339 155 0 0 chr1 199136671 199136729 -43527624 + AluS SINE Alu 1 58 -242 1041 178 29 62 chr1 199137175 199137248 -43527105 - MSTB LTR MaLR 0 426 352 1462 197 14 10 chr1 199137248 199137528 -43526825 + AluJb SINE Alu 6 289 -23 209 57 29 0 chr1 199137528 199137563 -43526790 + (CACAA)n Simple_repeat Simple_repeat 2 37 0 1041 178 29 62 chr1 199137572 199137739 -43526614 - MSTB LTR MaLR -74 352 194 411 176 0 12 chr1 199137753 199137838 -43526515 + MER99 DNA DNA 420 503 -325 817 161 65 24 chr1 199137919 199138087 -43526266 - MSTB LTR MaLR -251 175 1 1732 184 3 0 chr1 199138553 199138857 -43525496 + AluSx SINE Alu 1 305 -7 1551 180 13 17 chr1 199143288 199143588 -43520765 - AluJb SINE Alu -1 311 13 703 207 7 22 chr1 199144724 199144885 -43519468 - FLAM_C SINE Alu 0 159 1 485 233 51 28 chr1 199145372 199145548 -43518805 + L1MB7 LINE L1 6004 6183 -1 2005 199 55 0 chr1 199145642 199146045 -43518308 + MSTC LTR MaLR 4 428 0 251 354 0 10 chr1 199146120 199146219 -43518134 - L2 LINE L2 -211 3061 2964 1517 154 110 51 chr1 199146864 199147369 -43516984 - MER44D DNA MER2_type 0 605 1 220 322 107 0 chr1 199147539 199147660 -43516693 + L2 LINE L2 3139 3272 0 831 277 62 11 chr1 199147687 199147855 -43516498 + MER21B LTR ERV1 34 221 -642 210 71 0 0 chr1 199147855 199147883 -43516470 + (CACCC)n Simple_repeat Simple_repeat 2 29 0 831 277 62 11 chr1 199147883 199147974 -43516379 + MER21B LTR ERV1 221 306 -557 2113 121 17 3 chr1 199148526 199148823 -43515530 + AluSg SINE Alu 1 301 -9 339 286 24 8 chr1 199149139 199149265 -43515088 + GA-rich Low_complexity Low_complexity 4 131 0 280 91 0 45 chr1 199149265 199149309 -43515044 - Charlie3 DNA MER1_type -190 2520 2479 366 225 192 8 chr1 199152426 199152546 -43511807 - MER5A DNA MER1_type 0 189 48 213 39 0 0 chr1 199154602 199154628 -43509725 + (A)n Simple_repeat Simple_repeat 1 26 0 590 176 130 0 chr1 199155120 199155228 -43509125 - FLAM_A SINE Alu -11 122 1 30 45 0 0 chr1 199157119 199157163 -43507190 + AT_rich Low_complexity Low_complexity 1 44 0 230 231 0 0 chr1 199157387 199157439 -43506914 - L2 LINE L2 0 3313 3262 375 174 0 14 chr1 199158271 199158340 -43506013 - AluJo SINE Alu -160 142 75 1498 177 3 46 chr1 199159382 199159664 -43504689 + AluJo SINE Alu 13 282 -30 424 305 34 0 chr1 199159706 199159824 -43504529 - MLT1J LTR MaLR -193 318 197 254 135 39 0 chr1 199159825 199159877 -43504476 + L1MA3 LINE L1 6252 6305 0 738 241 82 65 chr1 199160153 199160677 -43503676 - MER34B LTR ERV1 0 565 12 1708 168 30 26 chr1 199161565 199161868 -43502485 - AluJo SINE Alu -8 304 1 198 145 0 53 chr1 199162250 199162326 -43502027 + (TCTCTG)n Simple_repeat Simple_repeat 6 77 0 472 202 101 54 chr1 199162578 199162746 -43501607 + MER46C DNA MER2_type 12 187 -151 949 177 30 42 chr1 199163251 199163516 -43500837 + LTR37B LTR ERV1 198 459 -9 244 224 196 19 chr1 199163682 199163789 -43500564 - L2 LINE L2 -1 3271 3146 385 261 109 33 chr1 199163794 199163978 -43500375 - MER34C LTR ERV1 -3 582 385 1913 111 0 0 chr1 199164028 199164271 -43500082 + AluSx SINE Alu 1 243 -69 305 194 83 14 chr1 199164581 199164653 -43499700 - MER34C LTR ERV1 -473 112 36 287 326 29 51 chr1 199165939 199166114 -43498239 - MER5B DNA MER1_type -5 173 3 257 324 36 18 chr1 199168111 199168222 -43496131 - MIR SINE MIR -78 130 18 21 0 0 0 chr1 199168356 199168377 -43495976 + AT_rich Low_complexity Low_complexity 1 21 0 191 167 24 0 chr1 199170779 199170821 -43493532 - MIR SINE MIR -25 237 195 2323 96 0 0 chr1 199171063 199171365 -43492988 + AluSg1 SINE Alu 1 302 -7 305 62 21 0 chr1 199171982 199172030 -43492323 + (CA)n Simple_repeat Simple_repeat 2 50 0 2250 85 7 10 chr1 199173156 199173449 -43490904 + AluSq SINE Alu 1 292 -21 228 205 51 26 chr1 199174020 199174137 -43490216 + (TA)n Simple_repeat Simple_repeat 1 120 0 1178 176 44 0 chr1 199174201 199174406 -43489947 + MER20 DNA MER1_type 1 214 -5 1968 145 0 3 chr1 199174456 199174753 -43489600 + AluJb SINE Alu 1 296 -16 186 43 0 0 chr1 199175216 199175239 -43489114 + (CCCCG)n Simple_repeat Simple_repeat 1 23 0 868 189 170 12 chr1 199175683 199175942 -43488411 - AluJb SINE Alu -1 301 2 274 23 47 0 chr1 199176194 199176237 -43488116 + (CA)n Simple_repeat Simple_repeat 2 46 0 271 296 148 17 chr1 199177598 199177713 -43486640 + MIR3 SINE MIR 3 132 -76 2269 98 17 0 chr1 199178209 199178504 -43485849 - AluSc SINE Alu -9 300 1 32 0 0 0 chr1 199378805 199378837 -43285516 + AT_rich Low_complexity Low_complexity 1 32 0 214 365 218 19 chr1 199379235 199379391 -43284962 + MIR3 SINE MIR 16 202 -6 183 308 75 47 chr1 199379727 199379834 -43284519 - L2 LINE L2 -7 3306 3197 29 47 0 0 chr1 199380763 199380806 -43283547 + AT_rich Low_complexity Low_complexity 1 43 0 201 39 0 0 chr1 199381945 199381971 -43282382 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 194 338 0 50 chr1 199382428 199382508 -43281845 - L2 LINE L2 0 3272 3197 549 211 55 0 chr1 199382758 199382867 -43281486 - MIR3 SINE MIR -12 196 82 981 250 23 0 chr1 199383435 199383655 -43280698 - MIR SINE MIR 0 262 38 512 90 26 0 chr1 199385008 199385086 -43279267 + MADE1 DNA Mariner 1 80 0 1932 137 55 3 chr1 199385501 199385793 -43278560 + AluSx SINE Alu 1 307 -5 932 187 20 0 chr1 199385793 199385990 -43278363 + AluSg/x SINE Alu 134 333 0 2317 109 0 0 chr1 199386378 199386680 -43277673 + AluSq SINE Alu 1 302 -11 4272 174 56 27 chr1 199387864 199388046 -43276307 + L1MC2 LINE L1 5224 5399 -945 1991 111 33 0 chr1 199388046 199388348 -43276005 + L1PA16 LINE L1 5842 6157 -9 4272 174 56 27 chr1 199388348 199389193 -43275160 + L1MC2 LINE L1 5399 6288 -56 2521 53 0 3 chr1 199389193 199389496 -43274857 - AluY SINE Alu -9 302 1 208 333 0 0 chr1 199391345 199391402 -43272951 - MER5A DNA MER1_type -64 125 69 273 29 0 0 chr1 199391403 199391437 -43272916 + (CA)n Simple_repeat Simple_repeat 2 35 0 1001 264 94 33 chr1 199392043 199392547 -43271806 + L2 LINE L2 2606 3148 -165 638 221 120 77 chr1 199392988 199393230 -43271123 + L1MC5 LINE L1 7349 7579 -382 2058 105 0 54 chr1 199393230 199393543 -43270810 + AluSx SINE Alu 1 296 -16 638 221 120 77 chr1 199393543 199393874 -43270479 + L1MC5 LINE L1 7579 7947 -14 1481 213 0 33 chr1 199394097 199394397 -43269956 + AluJo SINE Alu 11 300 -12 2240 78 14 0 chr1 199394609 199394892 -43269461 - AluY SINE Alu -24 287 1 22 70 0 0 chr1 199394952 199394995 -43269358 + AT_rich Low_complexity Low_complexity 1 43 0 1589 160 77 10 chr1 199395530 199395842 -43268511 + THE1C LTR MaLR 43 375 0 9818 107 38 42 chr1 199395842 199395965 -43268388 + THE1C-int LTR MaLR 1 123 -1457 2217 125 3 0 chr1 199395965 199396276 -43268077 + AluSq SINE Alu 1 312 -1 9818 107 38 42 chr1 199396276 199397738 -43266615 + THE1C-int LTR MaLR 123 1579 -1 2076 141 53 14 chr1 199397739 199398100 -43266253 + THE1C LTR MaLR 1 375 0 288 250 89 89 chr1 199398340 199398459 -43265894 + MIR SINE MIR 81 202 -60 2202 112 0 0 chr1 199398459 199398762 -43265591 - AluSc SINE Alu -6 303 1 288 250 89 89 chr1 199398762 199398822 -43265531 + MIR SINE MIR 201 260 -2 239 333 55 30 chr1 199399935 199400136 -43264217 - MER67A LTR ERV1 0 543 338 2325 70 0 7 chr1 199400182 199400480 -43263873 + AluY SINE Alu 1 296 -15 2127 120 3 0 chr1 199400904 199401196 -43263157 + AluSc SINE Alu 11 303 -6 8614 186 8 20 chr1 199401258 199402199 -43262154 + L1PA14 LINE L1 2371 3322 -2824 2055 152 7 0 chr1 199402199 199402508 -43261845 + AluSx SINE Alu 1 311 -1 8614 186 8 20 chr1 199402508 199403496 -43260857 + L1PA14 LINE L1 3322 4276 -1870 5958 113 8 7 chr1 199403497 199405251 -43259102 + L1PA14 LINE L1 4423 6161 0 4574 131 35 34 chr1 199405587 199405925 -43258428 - L1PB3 LINE L1 -2 6152 5816 2012 128 0 0 chr1 199405925 199406221 -43258132 - AluSg1 SINE Alu -13 296 1 4574 131 35 34 chr1 199406221 199406797 -43257556 - L1PB3 LINE L1 -338 5816 5237 612 108 0 0 chr1 199408079 199408172 -43256181 - Alu SINE Alu 0 312 220 2033 55 36 11 chr1 199408182 199408479 -43255874 - AluY SINE Alu 0 304 1 287 303 0 0 chr1 199409468 199409544 -43254809 - MER31-int LTR ERV1 -4089 847 772 1957 170 16 32 chr1 199410882 199411324 -43253029 + MER66B LTR ERV1 52 486 0 265 277 15 15 chr1 199412293 199412358 -43251995 + MIR3 SINE MIR 14 78 -130 230 303 118 23 chr1 199413406 199413848 -43250505 - L1ME3A LINE L1 -222 5931 5448 918 201 10 19 chr1 199414172 199414381 -43249972 + Tigger6a DNA MER2_type 5 211 -872 1452 224 42 37 chr1 199414381 199414836 -43249517 - MLT1C LTR MaLR 0 467 11 * 3045 196 93 24 chr1 199414833 199415444 -43248909 + Tigger6a DNA MER2_type 220 902 -695 2115 133 0 0 chr1 199415444 199415738 -43248615 + AluY SINE Alu 1 294 -17 3045 196 93 24 chr1 199415738 199415934 -43248419 + Tigger6a DNA MER2_type 902 1083 0 1298 191 44 14 chr1 199416452 199416746 -43247607 - MER67D LTR ERV1 -108 406 104 1714 126 0 0 chr1 199416788 199417027 -43247326 - AluSc SINE Alu -70 239 1 749 193 13 52 chr1 199417027 199417288 -43247065 - MER67B LTR ERV1 -397 225 1 44 35 0 0 chr1 199417699 199417757 -43246596 + AT_rich Low_complexity Low_complexity 1 58 0 880 120 107 0 chr1 199417943 199418093 -43246260 + AluY SINE Alu 118 283 -28 753 193 63 36 chr1 199418437 199418660 -43245693 + MER67B LTR ERV1 1 229 -432 553 224 75 27 chr1 199418764 199418966 -43245387 + MER67D LTR ERV1 86 327 -234 2007 128 0 4 chr1 199420867 199421148 -43243205 - AluSc SINE Alu -29 280 1 249 262 2 86 chr1 199421743 199421898 -43242455 - L1ME3A LINE L1 -1090 5039 4894 549 287 91 11 chr1 199422140 199422502 -43241851 - L1ME3A LINE L1 -2042 4087 3697 235 310 51 6 chr1 199422604 199422762 -43241591 - L1ME3A LINE L1 -2607 3522 3358 688 241 93 102 chr1 199422786 199423122 -43241231 - L1ME3A LINE L1 -11 6159 5821 4436 159 65 2 chr1 199423122 199423958 -43240395 - L1MC1 LINE L1 -11 6322 5435 688 241 93 102 chr1 199423958 199424648 -43239705 - L1ME3A LINE L1 -349 5821 5108 1765 148 40 151 chr1 199424920 199425476 -43238877 - LTR12 LTR ERV1 -218 496 3 552 316 114 64 chr1 199425487 199425959 -43238394 - L1ME3A LINE L1 -5560 559 64 24 32 0 0 chr1 199427248 199427279 -43237074 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr1 199427376 199427402 -43236951 + AT_rich Low_complexity Low_complexity 1 26 0 2534 68 0 0 chr1 199427878 199428189 -43236164 - AluY SINE Alu 0 311 1 361 309 90 5 chr1 199429104 199429292 -43235061 - HAL1 LINE L1 -814 1693 1490 * 495 314 52 15 chr1 199429277 199429544 -43234809 + HAL1b LINE L1 376 1733 -774 1665 173 0 7 chr1 199430518 199430831 -43233522 + AluSx SINE Alu 1 311 0 4647 142 65 33 chr1 199431041 199431550 -43232803 - L1MA9 LINE L1 0 6312 5756 207 0 0 0 chr1 199431550 199431573 -43232780 + (TG)n Simple_repeat Simple_repeat 2 24 0 4647 142 65 33 chr1 199431573 199432013 -43232340 - L1MA9 LINE L1 -556 5756 5332 1916 156 42 31 chr1 199432013 199432373 -43231980 + THE1B LTR MaLR 1 364 0 10250 127 13 6 chr1 199432373 199433942 -43230411 + THE1B-int LTR MaLR 1 1580 0 2094 135 36 36 chr1 199433942 199434306 -43230047 + THE1B LTR MaLR 1 364 0 3496 236 34 10 chr1 199434316 199435163 -43229190 - L1MA9 LINE L1 -857 5289 4380 2099 83 36 0 chr1 199435163 199435440 -43228913 - AluY SINE Alu -24 287 1 3496 236 34 10 chr1 199435440 199435704 -43228649 - L1MA9 LINE L1 -1766 4380 4124 * 5428 225 83 25 chr1 199435700 199436085 -43228268 + L1M1 LINE L1 2917 3278 -4287 1734 181 58 0 chr1 199436085 199436411 -43227942 - MER7A DNA MER2_type 0 346 4 5428 225 83 25 chr1 199436411 199438087 -43226266 + L1M1 LINE L1 3278 5104 -2461 3000 187 21 0 chr1 199438210 199438740 -43225613 + Tigger1 DNA MER2_type 1 541 -1877 479 213 0 0 chr1 199438740 199438834 -43225519 - FLAM_A SINE Alu -48 94 1 710 271 11 5 chr1 199438920 199439118 -43225235 + MER90 LTR ERV1 36 214 -361 * 878 243 119 0 chr1 199439114 199439340 -43225013 + MER90 LTR ERV1 322 574 -1 657 203 107 43 chr1 199441001 199441188 -43223165 + MIR SINE MIR 2 200 -62 238 293 156 30 chr1 199441291 199441458 -43222895 - L2 LINE L2 -5 3308 3121 319 219 181 4 chr1 199441749 199441926 -43222427 - MLT1H LTR MaLR -113 454 155 216 0 0 0 chr1 199441966 199441990 -43222363 + (A)n Simple_repeat Simple_repeat 1 24 0 1991 121 3 23 chr1 199441993 199442298 -43222055 + AluSc SINE Alu 1 299 -10 357 252 34 3 chr1 199442306 199442425 -43221928 - MLT1H LTR MaLR -360 189 29 313 290 45 22 chr1 199442502 199442726 -43221627 - L1M4 LINE L1 -1444 4702 4474 1355 163 10 58 chr1 199442857 199443151 -43221202 - L1MB7 LINE L1 -170 6014 5735 336 262 8 63 chr1 199443497 199443623 -43220730 - MER21-int LTR ERV1 -55 4136 4018 2086 159 75 8 chr1 199443628 199444149 -43220204 - L1MB7 LINE L1 -439 5739 5188 1611 108 4 50 chr1 199444159 199444417 -43219936 - THE1B LTR MaLR 0 364 119 356 181 14 14 chr1 199444499 199444571 -43219782 + L1M4 LINE L1 5391 5462 -712 215 298 40 96 chr1 199444571 199444769 -43219584 - L2 LINE L2 -8 3305 3119 689 342 122 14 chr1 199444877 199445319 -43219034 - L2 LINE L2 -353 2961 2472 1656 214 106 9 chr1 199447383 199447808 -43216545 + MER31B LTR ERV1 1 466 0 1837 154 3 16 chr1 199447951 199448256 -43216097 + AluSg SINE Alu 1 301 -9 30 0 0 0 chr1 199448302 199448332 -43216021 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr1 199448583 199448609 -43215744 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 199449525 199449548 -43214805 + AT_rich Low_complexity Low_complexity 1 23 0 30 69 0 0 chr1 199449925 199449983 -43214370 + AT_rich Low_complexity Low_complexity 1 58 0 216 214 0 0 chr1 199450384 199450426 -43213927 + T-rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 199450492 199450513 -43213840 + AT_rich Low_complexity Low_complexity 1 21 0 207 114 0 0 chr1 199451403 199451438 -43212915 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 56 0 0 chr1 199451918 199451954 -43212399 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 199452109 199452131 -43212222 + AT_rich Low_complexity Low_complexity 1 22 0 1646 187 33 0 chr1 199452230 199452529 -43211824 - 7SLRNA srpRNA srpRNA -2 318 10 2370 155 21 16 chr1 199452756 199453182 -43211171 - MSTA LTR MaLR 0 428 1 7624 195 66 10 chr1 199453182 199454745 -43209608 - MSTA-int LTR MaLR 0 1651 1 2598 126 24 5 chr1 199454745 199455165 -43209188 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr1 199456255 199456284 -43208069 + AT_rich Low_complexity Low_complexity 1 29 0 1705 139 0 4 chr1 199457263 199457557 -43206796 - AluSx SINE Alu 0 327 35 22 0 0 0 chr1 199457641 199457663 -43206690 + AT_rich Low_complexity Low_complexity 1 22 0 480 18 0 0 chr1 199458344 199458401 -43205952 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 24 53 0 0 chr1 199458910 199458948 -43205405 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr1 199459296 199459327 -43205026 + AT_rich Low_complexity Low_complexity 1 31 0 2586 30 0 0 chr1 199459474 199459776 -43204577 - AluY SINE Alu -9 302 1 50 31 0 0 chr1 199460275 199460339 -43204014 + AT_rich Low_complexity Low_complexity 1 64 0 687 267 106 45 chr1 199460722 199461066 -43203287 + L1M4 LINE L1 2948 3270 -2876 2028 140 0 0 chr1 199461066 199461374 -43202979 + AluSx SINE Alu 1 308 -4 687 267 106 45 chr1 199461374 199461670 -43202683 + L1M4 LINE L1 3270 3627 -2519 6672 17 0 0 chr1 199461702 199462466 -43201887 - L1PA2 LINE L1 -3 6152 5389 3675 40 0 0 chr1 199462466 199462913 -43201440 + L1P LINE L1 3557 4003 -2143 461 234 18 42 chr1 199462900 199463067 -43201286 + L1M4 LINE L1 3601 3763 -2383 * 180 179 0 0 chr1 199463072 199463111 -43201242 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 283 33 0 chr1 199463406 199463498 -43200855 + CT-rich Low_complexity Low_complexity 6 100 0 1519 264 43 48 chr1 199463512 199464180 -43200173 - L1M4 LINE L1 -1909 4237 3573 554 228 134 35 chr1 199465589 199465791 -43198562 + MER77 LTR ERV1 4 225 -380 1224 280 56 30 chr1 199465811 199466239 -43198114 + MER77 LTR ERV1 161 599 -6 488 327 79 25 chr1 199466289 199466656 -43197697 - L1MEc LINE L1 -4574 1822 1436 284 357 75 9 chr1 199466690 199466903 -43197450 - L2 LINE L2 -4 3309 3083 317 332 71 37 chr1 199467279 199467604 -43196749 - L1MEc LINE L1 -5284 921 586 1663 63 18 0 chr1 199467617 199467838 -43196515 - L1PA8 LINE L1 0 6172 5948 4284 79 18 20 chr1 199467838 199468446 -43195907 - L1PA7 LINE L1 -42 6112 5506 2388 74 0 6 chr1 199468724 199469035 -43195318 + AluY SINE Alu 1 309 -2 25 0 0 0 chr1 199470300 199470325 -43194028 + AT_rich Low_complexity Low_complexity 1 25 0 1018 271 77 6 chr1 199470702 199471042 -43193311 + MLT1A1 LTR MaLR 1 364 -1 188 292 79 22 chr1 199472117 199472206 -43192147 - L2 LINE L2 -4 3268 3175 1352 204 60 27 chr1 199472654 199472987 -43191366 - MER2 DNA MER2_type 0 344 1 569 216 175 6 chr1 199473334 199473505 -43190848 + MLT1A1 LTR MaLR 1 200 -165 435 116 3 5 chr1 199473499 199473576 -43190777 + MLT1A1 LTR MaLR 289 390 0 * 828 336 13 13 chr1 199473612 199474002 -43190351 + L1MEc LINE L1 411 800 -5596 365 269 108 24 chr1 199474043 199474340 -43190013 + L1MEc LINE L1 933 1254 -5142 322 267 67 13 chr1 199474457 199474553 -43189800 + HAL1 LINE L1 1389 1497 -1010 189 0 0 0 chr1 199474553 199474574 -43189779 + (CA)n Simple_repeat Simple_repeat 2 22 0 322 267 67 13 chr1 199474574 199474627 -43189726 + HAL1 LINE L1 1497 1546 -961 23 0 0 0 chr1 199474628 199474651 -43189702 + AT_rich Low_complexity Low_complexity 1 23 0 426 299 22 76 chr1 199474737 199474921 -43189432 + MER96 DNA MER1_type? 2 175 0 345 244 0 0 chr1 199475045 199475127 -43189226 + L1MEc LINE L1 1985 2066 -4330 397 247 69 53 chr1 199475165 199475412 -43188941 + L1MEc LINE L1 2047 2297 -4099 316 280 24 16 chr1 199475472 199475597 -43188756 + L1MEc LINE L1 2370 2495 -3720 454 227 91 8 chr1 199475614 199475746 -43188607 + L1MA3 LINE L1 6163 6305 0 572 198 0 16 chr1 199475857 199475978 -43188375 + MLT1A1 LTR MaLR 1 119 -246 1012 207 11 0 chr1 199476024 199476203 -43188150 + MLT1A1 LTR MaLR 122 302 -63 28 0 0 0 chr1 199476215 199476243 -43188110 + AT_rich Low_complexity Low_complexity 1 28 0 682 278 73 25 chr1 199476304 199476868 -43187485 + L1MEc LINE L1 3190 3780 -2435 282 281 95 29 chr1 199476875 199477085 -43187268 + L1MEc LINE L1 3952 4175 -2040 579 259 20 10 chr1 199477099 199477300 -43187053 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr1 199477302 199477339 -43187014 + AT_rich Low_complexity Low_complexity 1 37 0 1284 291 75 40 chr1 199477365 199478601 -43185752 + L1M4 LINE L1 2269 3548 -2598 2028 164 11 16 chr1 199478990 199479367 -43184986 - THE1C LTR MaLR 0 375 1 258 320 81 36 chr1 199479368 199479615 -43184738 - L2 LINE L2 -123 3190 2933 1830 161 66 20 chr1 199479633 199479981 -43184372 - THE1B LTR MaLR 0 364 1 270 327 114 24 chr1 199479984 199480238 -43184115 - L1MEc LINE L1 -6015 381 105 185 119 24 0 chr1 199480246 199480288 -43184065 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 393 278 21 21 chr1 199480394 199480678 -43183675 - L1MEc LINE L1 -4079 2317 2034 587 297 73 22 chr1 199480696 199481009 -43183344 + L1M4 LINE L1 4050 4378 -1768 795 261 91 43 chr1 199481010 199481405 -43182948 + L1MC4 LINE L1 6896 7309 -733 1070 268 66 36 chr1 199481466 199481877 -43182476 + L1MC4 LINE L1 7299 7721 -321 205 274 0 0 chr1 199482170 199482232 -43182121 + T-rich Low_complexity Low_complexity 1 62 0 215 347 28 0 chr1 199483591 199483663 -43180690 - L2 LINE L2 -47 3266 3193 2466 160 39 0 chr1 199483959 199484372 -43179981 - MER57B LTR ERV1 -5 429 1 821 301 47 23 chr1 199484674 199485016 -43179337 - LTR16B LTR ERVL -6 458 109 3914 161 79 42 chr1 199485023 199485894 -43178459 + MER4D LTR ERV1 1 903 0 226 288 158 56 chr1 199486660 199486945 -43177408 + MLT1J2 LTR MaLR 137 450 0 343 313 119 11 chr1 199488668 199488844 -43175509 + MLT1J LTR MaLR 38 232 -279 514 292 40 32 chr1 199489402 199489679 -43174674 - L1ME3 LINE L1 0 6162 5884 1632 199 3 3 chr1 199490163 199490469 -43173884 - AluJb SINE Alu -6 306 1 229 121 61 30 chr1 199490496 199490562 -43173791 + (TA)n Simple_repeat Simple_repeat 2 69 0 2672 196 21 45 chr1 199491048 199491669 -43172684 + L1MA6 LINE L1 5694 6299 -1 25 0 0 0 chr1 199492624 199492649 -43171704 + AT_rich Low_complexity Low_complexity 1 25 0 2008 158 39 18 chr1 199493371 199493458 -43170895 - MER1B DNA MER1_type -2375 337 253 1892 222 40 65 chr1 199493458 199494026 -43170327 + MLT2B3 LTR ERVL 1 554 0 2008 158 39 18 chr1 199494026 199494268 -43170085 - MER1B DNA MER1_type -2459 253 1 873 192 19 123 chr1 199494268 199494576 -43169777 - MER93b LTR ERV1 0 373 98 2670 165 32 28 chr1 199494951 199495128 -43169225 - MER61D LTR ERV1 -1 500 325 1914 145 3 0 chr1 199495128 199495417 -43168936 - AluSg SINE Alu -19 291 2 2670 165 32 28 chr1 199495417 199495737 -43168616 - MER61D LTR ERV1 -176 325 1 10929 187 39 49 chr1 199495738 199496010 -43168343 - HUERS-P3b LTR ERV1 -1 6995 6722 225 0 0 0 chr1 199496010 199496035 -43168318 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 10929 187 39 49 chr1 199496035 199498478 -43165875 - HUERS-P3b LTR ERV1 -274 6722 4257 1969 148 27 33 chr1 199498478 199498844 -43165509 - THE1B LTR MaLR 0 364 1 10929 187 39 49 chr1 199498844 199500295 -43164058 - HUERS-P3b LTR ERV1 -2739 4257 2793 2321 65 3 50 chr1 199500295 199500618 -43163735 - AluY SINE Alu -3 308 1 10929 187 39 49 chr1 199500618 199501246 -43163107 - HUERS-P3b LTR ERV1 -4203 2793 609 967 180 68 138 chr1 199501245 199501755 -43162598 - MER61D-int LTR ERV1 -2600 488 195 * 2604 155 8 2 chr1 199501755 199502154 -43162199 - MER61D LTR ERV1 -100 401 1 22 80 0 0 chr1 199502883 199502933 -43161420 + AT_rich Low_complexity Low_complexity 1 50 0 542 208 0 0 chr1 199503357 199503463 -43160890 - FRAM SINE Alu -8 168 63 283 159 48 16 chr1 199503463 199503526 -43160827 + LTR68 LTR ERV1 23 87 -653 1101 231 47 27 chr1 199503713 199504012 -43160341 + LTR68 LTR ERV1 309 613 -127 27 0 0 0 chr1 199504111 199504138 -43160215 + AT_rich Low_complexity Low_complexity 1 27 0 622 126 117 0 chr1 199504235 199504346 -43160007 - L1PB3 LINE L1 -11 6200 6077 11073 209 34 39 chr1 199504448 199508873 -43155480 - L1PB3 LINE L1 -123 6088 1494 4672 157 41 33 chr1 199508859 199509850 -43154503 - L1PB3 LINE L1 -5066 1138 140 * 1670 248 34 28 chr1 199509851 199510442 -43153911 - L1PB3 LINE L1 -5223 981 1 2174 295 44 32 chr1 199510543 199511653 -43152700 - L1PBa LINE L1 -5738 1125 3 29 70 0 0 chr1 199511776 199511833 -43152520 + AT_rich Low_complexity Low_complexity 1 57 0 230 214 0 0 chr1 199513534 199513576 -43150777 + GA-rich Low_complexity Low_complexity 3 44 0 504 246 81 28 chr1 199513941 199514189 -43150164 + LTR37B LTR ERV1 208 468 0 472 333 66 68 chr1 199514320 199514629 -43149724 + L1MEd LINE L1 447 756 -5363 2044 133 3 3 chr1 199514629 199514930 -43149423 + AluSq SINE Alu 2 302 -11 472 333 66 68 chr1 199514930 199515137 -43149216 + L1MEd LINE L1 756 962 -5157 27 0 0 0 chr1 199515143 199515170 -43149183 + AT_rich Low_complexity Low_complexity 1 27 0 702 287 302 22 chr1 199515765 199515884 -43148469 + L2 LINE L2 1864 1948 -1366 236 71 48 0 chr1 199515884 199515926 -43148427 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 702 287 302 22 chr1 199515926 199516356 -43147997 + L2 LINE L2 1948 2567 -747 206 366 89 19 chr1 199516429 199516642 -43147711 + L2 LINE L2 2996 3223 -90 928 276 85 28 chr1 199516734 199517132 -43147221 + MLT1C LTR MaLR 47 467 0 26 50 0 0 chr1 199517414 199517454 -43146899 + AT_rich Low_complexity Low_complexity 1 40 0 257 348 68 22 chr1 199517516 199517872 -43146481 + L1MC/D LINE L1 5496 5876 -288 21 0 0 0 chr1 199518698 199518719 -43145634 + AT_rich Low_complexity Low_complexity 1 21 0 34 99 0 0 chr1 199519162 199519273 -43145080 + AT_rich Low_complexity Low_complexity 1 111 0 22 70 0 0 chr1 199519462 199519505 -43144848 + AT_rich Low_complexity Low_complexity 1 43 0 1438 264 54 43 chr1 199519788 199520360 -43143993 + MLT1G LTR MaLR 13 549 0 200 268 12 0 chr1 199521500 199521582 -43142771 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 180 325 168 29 chr1 199521684 199521893 -43142460 - MIR SINE MIR 0 262 25 733 237 81 86 chr1 199522183 199522579 -43141774 - MSTD LTR MaLR 0 396 3 274 243 117 0 chr1 199522581 199522692 -43141661 + MER103 DNA DNA 31 154 -12 21 0 0 0 chr1 199523375 199523396 -43140957 + AT_rich Low_complexity Low_complexity 1 21 0 629 171 0 0 chr1 199523396 199523507 -43140846 - AluJb SINE Alu -14 298 188 1680 205 129 91 chr1 199523509 199524411 -43139942 - LTR1B LTR ERV1 -4 1016 1 1168 182 5 0 chr1 199524425 199524617 -43139736 - AluJb SINE Alu -119 193 1 27 0 0 0 chr1 199524644 199524671 -43139682 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr1 199524875 199524903 -43139450 + AT_rich Low_complexity Low_complexity 1 28 0 48 43 0 0 chr1 199524973 199525042 -43139311 + AT_rich Low_complexity Low_complexity 1 69 0 329 311 69 9 chr1 199525275 199525527 -43138826 + L1ME LINE L1 5272 5539 -582 559 314 102 8 chr1 199525759 199525995 -43138358 + MIR SINE MIR 5 262 0 1007 247 5 0 chr1 199528438 199528661 -43135692 + MER58A DNA MER1_type 1 224 0 310 232 127 70 chr1 199528673 199528815 -43135538 + MER69A DNA AcHobo 20 169 -8 1935 171 28 22 chr1 199528916 199529278 -43135075 + THE1B LTR MaLR 1 364 0 10075 110 30 5 chr1 199529278 199530822 -43133531 + THE1B-int LTR MaLR 1 1580 0 1934 162 39 25 chr1 199530822 199531181 -43133172 + THE1B LTR MaLR 1 364 0 2101 119 13 7 chr1 199532643 199533062 -43131291 - AluSq SINE Alu 0 422 2 22 0 0 0 chr1 199533678 199533700 -43130653 + AT_rich Low_complexity Low_complexity 1 22 0 567 59 12 0 chr1 199534362 199534447 -43129906 - L1PA13 LINE L1 0 6163 6078 440 171 13 0 chr1 199534844 199534920 -43129433 + MER45A DNA AcHobo 101 177 -1 1380 236 86 16 chr1 199535224 199535610 -43128743 + MLT1C LTR MaLR 55 467 0 619 252 0 0 chr1 199536133 199536260 -43128093 + MER45A DNA AcHobo 52 178 0 2359 291 61 61 chr1 199539492 199539921 -43124432 + L2 LINE L2 1098 1526 -1788 766 230 17 65 chr1 199539921 199540151 -43124202 - MER20 DNA MER1_type 0 219 1 2359 291 61 61 chr1 199540151 199540944 -43123409 + L2 LINE L2 1525 2320 -994 860 288 128 21 chr1 199541056 199541445 -43122908 + LTR33A LTR ERVL 87 517 -6 704 290 53 95 chr1 199541445 199542159 -43122194 + L2 LINE L2 2310 3066 -247 194 276 69 0 chr1 199542346 199542404 -43121949 + L3 LINE CR1 932 993 -584 311 327 10 0 chr1 199542521 199542625 -43121728 + MIR SINE MIR 110 214 -48 183 299 111 35 chr1 199543287 199543431 -43120922 + L2 LINE L2 2717 2871 -443 2453 67 0 0 chr1 199543605 199543904 -43120449 + AluY SINE Alu 1 299 -12 189 0 0 0 chr1 199543930 199543951 -43120402 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 277 281 88 38 chr1 199544444 199544604 -43119749 + L1MC5 LINE L1 7697 7864 -97 24 0 0 0 chr1 199545129 199545153 -43119200 + AT_rich Low_complexity Low_complexity 1 24 0 936 336 50 7 chr1 199546553 199546969 -43117384 - LTR16B LTR ERVL -9 455 22 180 0 0 0 chr1 199546999 199547019 -43117334 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 33 66 0 0 chr1 199547921 199547982 -43116371 + AT_rich Low_complexity Low_complexity 1 61 0 24 67 0 0 chr1 199548041 199548086 -43116267 + AT_rich Low_complexity Low_complexity 1 45 0 690 241 29 23 chr1 199548287 199548461 -43115892 + MER45A DNA AcHobo 1 175 -3 271 188 0 47 chr1 199548567 199548631 -43115722 - LTR8A LTR ERV1 -100 627 567 5490 32 0 9 chr1 199548631 199548733 -43115620 - SVA Other Other -2 1384 624 5490 29 0 11 chr1 199548733 199549391 -43114962 + SVA Other Other 624 1274 -112 272 343 130 39 chr1 199551437 199551874 -43112479 + L2 LINE L2 590 1066 -2248 1316 227 25 108 chr1 199552480 199552714 -43111639 - MLT1D LTR MaLR -28 477 225 1108 155 10 5 chr1 199552714 199552921 -43111432 + L1MA6 LINE L1 6087 6294 -6 1316 227 25 108 chr1 199552921 199553174 -43111179 - MLT1D LTR MaLR -280 225 33 2046 156 37 6 chr1 199553174 199553527 -43110826 - THE1B LTR MaLR 0 364 1 1316 227 25 108 chr1 199553527 199553558 -43110795 - MLT1D LTR MaLR -472 33 1 183 42 0 0 chr1 199553774 199553798 -43110555 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 395 263 11 0 chr1 199554293 199554388 -43109965 + Zaphod DNA AcHobo 3935 4030 -1 356 266 11 0 chr1 199554866 199554960 -43109393 + MIR SINE MIR 103 197 -65 1721 161 55 0 chr1 199554967 199555077 -43109276 + AluSx SINE Alu 1 104 -208 191 36 36 0 chr1 199555077 199555105 -43109248 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1721 161 55 0 chr1 199555105 199555285 -43109068 + AluSx SINE Alu 104 307 -5 4129 93 25 10 chr1 199556134 199556737 -43107616 + L1PA8 LINE L1 5533 6144 -28 189 74 0 0 chr1 199556737 199556764 -43107589 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 387 280 70 58 chr1 199557395 199557809 -43106544 + L1ME1 LINE L1 4755 5173 -973 8767 100 13 1 chr1 199557817 199559849 -43104504 - L1PA7 LINE L1 -10 6144 4089 21 0 0 0 chr1 199559849 199559870 -43104483 + AT_rich Low_complexity Low_complexity 1 21 0 436 281 92 20 chr1 199559952 199560105 -43104248 + MER77 LTR ERV1 62 225 -380 * 1806 238 48 39 chr1 199560073 199560532 -43103821 + MER77 LTR ERV1 143 605 0 1805 258 71 53 chr1 199560532 199561442 -43102911 + L1ME1 LINE L1 5243 6161 -5 24 32 0 0 chr1 199561582 199561613 -43102740 + AT_rich Low_complexity Low_complexity 1 31 0 2820 16 0 0 chr1 199562010 199562325 -43102028 - AluYb8 SINE Alu -3 315 1 471 300 70 35 chr1 199563090 199563445 -43100908 + L1ME LINE L1 5458 5822 -348 266 305 172 29 chr1 199563994 199564168 -43100185 - MIR SINE MIR 0 262 64 188 111 28 0 chr1 199564306 199564342 -43100011 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr1 199565183 199565216 -43099137 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr1 199565227 199565269 -43099084 + AT_rich Low_complexity Low_complexity 1 42 0 893 275 26 20 chr1 199666611 199666913 -42997440 + ERVL LTR ERVL 1636 1939 -3825 22 80 0 0 chr1 199666975 199667025 -42997328 + AT_rich Low_complexity Low_complexity 1 50 0 349 275 99 21 chr1 199667340 199667482 -42996871 - L1ME4a LINE L1 -188 5933 5781 309 291 130 23 chr1 199667591 199667852 -42996501 - L1ME4a LINE L1 -373 5748 5460 280 328 30 23 chr1 199668028 199668159 -42996194 + L3 LINE CR1 1234 1365 -212 240 271 24 0 chr1 199668567 199668652 -42995701 + (TATG)n Simple_repeat Simple_repeat 1 87 0 1719 168 7 7 chr1 199668681 199668961 -42995392 + AluJo SINE Alu 1 280 -32 909 123 35 0 chr1 199668986 199669157 -42995196 + GA-rich Low_complexity Low_complexity 4 180 0 2005 113 47 4 chr1 199669653 199669927 -42994426 - AluSq SINE Alu -25 288 3 1687 77 0 13 chr1 199669933 199669945 -42994408 - L1PA7 LINE L1 0 6154 6143 195 42 0 0 chr1 199669945 199669969 -42994384 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1687 77 0 13 chr1 199669969 199670189 -42994164 - L1PA7 LINE L1 -11 6143 5925 2599 137 43 0 chr1 199671045 199671484 -42992869 - LTR24 LTR ERV1 0 467 10 915 215 19 5 chr1 199671574 199671783 -42992570 - L1MD2 LINE L1 -16 6343 6132 4746 142 8 26 chr1 199671825 199672645 -42991708 - L1MC1 LINE L1 -5 6328 5523 806 168 58 48 chr1 199672657 199672812 -42991541 + MLT1C LTR MaLR 22 181 -286 2128 80 22 51 chr1 199672812 199673123 -42991230 + AluY SINE Alu 1 302 -9 806 168 58 48 chr1 199673123 199673175 -42991178 + MLT1C LTR MaLR 181 231 -236 449 250 45 30 chr1 199673339 199673555 -42990798 + MLT1B LTR MaLR 272 385 -5 2035 102 68 3 chr1 199674890 199675183 -42989170 - AluSx SINE Alu 0 312 1 1527 126 5 5 chr1 199675272 199675486 -42988867 + AluSx SINE Alu 1 214 -98 488 136 0 0 chr1 199675587 199675653 -42988700 + AluSx SINE Alu 219 284 -28 2031 152 24 9 chr1 199675700 199676029 -42988324 - MER1B DNA MER1_type -3 334 1 225 122 122 0 chr1 199676674 199676723 -42987630 - L1M4 LINE L1 -2904 3242 3188 191 312 139 28 chr1 199676732 199676947 -42987406 + L2 LINE L2 2818 3056 -216 309 93 0 0 chr1 199676947 199676990 -42987363 + 5S rRNA rRNA 1 43 -78 208 250 73 73 chr1 199677162 199677286 -42987067 + L2 LINE L2 3190 3313 0 467 301 72 20 chr1 199677292 199677445 -42986908 - MER5A DNA MER1_type -28 161 1 312 222 95 8 chr1 199677952 199677965 -42986388 - L1MA10 LINE L1 -2 6332 6320 2060 215 33 74 chr1 199677965 199678724 -42985629 - L1ME2 LINE L1 -9 6155 5428 517 252 30 92 chr1 199679059 199679495 -42984858 - Charlie7 DNA MER1_type -1891 721 313 21 36 0 0 chr1 199680373 199680401 -42983952 + AT_rich Low_complexity Low_complexity 1 28 0 4361 129 17 3 chr1 199681599 199682234 -42982119 - LTR9B LTR ERV1 0 644 1 19213 104 12 18 chr1 199682244 199684957 -42979396 - HUERS-P3b LTR ERV1 -9 7409 4713 5256 95 38 52 chr1 199684948 199685761 -42978592 - HUERS-P3b LTR ERV1 -3544 3874 3073 * 2167 181 81 5 chr1 199685761 199686171 -42978182 + LTR8 LTR ERV1 1 441 -250 6899 109 23 7 chr1 199686171 199687962 -42976391 - HUERS-P3b LTR ERV1 -4776 2642 750 834 109 109 7 chr1 199687975 199688112 -42976241 - HUERS-P3b LTR ERV1 -6859 559 409 485 165 41 52 chr1 199688115 199688212 -42976141 - HUERS-P3b LTR ERV1 -7322 96 1 4029 133 32 13 chr1 199688212 199688236 -42976117 - LTR9B LTR ERV1 0 644 622 6264 63 33 13 chr1 199688236 199689001 -42975352 + LTR17 LTR ERV1 1 780 0 4029 133 32 13 chr1 199689001 199689608 -42974745 - LTR9B LTR ERV1 -22 622 1 443 153 82 0 chr1 199689768 199689853 -42974500 + AluJb SINE Alu 211 302 -10 2150 108 24 0 chr1 199690735 199691031 -42973322 + AluY SINE Alu 1 303 -8 335 248 146 29 chr1 199691222 199691359 -42972994 + L1ME4a LINE L1 5930 6082 -39 2880 19 0 0 chr1 199692642 199692953 -42971400 - AluYa5 SINE Alu 0 311 1 28 48 0 0 chr1 199693610 199693652 -42970701 + AT_rich Low_complexity Low_complexity 1 42 0 42341 48 22 6 chr1 199693656 199699707 -42964646 - L1PA2 LINE L1 0 6155 3 932 192 110 121 chr1 199699913 199700198 -42964155 + MLT1A1 LTR MaLR 5 287 -78 795 180 0 0 chr1 199700198 199700320 -42964033 - FLAM_A SINE Alu -11 122 1 932 192 110 121 chr1 199700320 199700399 -42963954 + MLT1A1 LTR MaLR 287 365 0 606 241 95 66 chr1 199700539 199700813 -42963540 - L2 LINE L2 0 3313 3032 2210 106 3 3 chr1 199700894 199701205 -42963148 - AluSq SINE Alu -2 311 1 2544 184 76 109 chr1 199701743 199702495 -42961858 + LTR8A LTR ERV1 1 727 0 22 0 0 0 chr1 199703143 199703165 -42961188 + AT_rich Low_complexity Low_complexity 1 22 0 2404 51 10 7 chr1 199703171 199703467 -42960886 + AluY SINE Alu 1 297 -14 2192 114 3 3 chr1 199703870 199704169 -42960184 - AluSg SINE Alu -11 299 1 2231 105 7 0 chr1 199704362 199704656 -42959697 + AluSx SINE Alu 1 296 -16 243 61 0 0 chr1 199704915 199704948 -42959405 + (TG)n Simple_repeat Simple_repeat 2 34 0 1924 150 0 3 chr1 199704948 199705234 -42959119 - AluSx SINE Alu -27 285 1 22 0 0 0 chr1 199705251 199705273 -42959080 + AT_rich Low_complexity Low_complexity 1 22 0 385 266 91 28 chr1 199705943 199706086 -42958267 + MIR SINE MIR 20 171 -91 2091 99 25 0 chr1 199706733 199707015 -42957338 - AluSc SINE Alu -12 297 9 268 318 118 55 chr1 199707216 199707544 -42956809 - L1ME LINE L1 -332 5789 5432 8339 13 1 0 chr1 199707544 199708978 -42955375 + L1PA2 LINE L1 4717 6151 -4 268 318 118 55 chr1 199708978 199709030 -42955323 - L1ME LINE L1 -689 5432 5385 565 234 69 34 chr1 199710241 199710416 -42953937 + MIR SINE MIR 12 192 -70 240 35 0 0 chr1 199710425 199710454 -42953899 + (TG)n Simple_repeat Simple_repeat 2 30 0 1330 195 16 4 chr1 199710454 199710705 -42953648 - AluJb SINE Alu -28 284 31 537 208 21 0 chr1 199710811 199710907 -42953446 - AluJ/FLAM SINE Alu -213 99 2 21 36 0 0 chr1 199711045 199711073 -42953280 + AT_rich Low_complexity Low_complexity 1 28 0 4689 10 0 4 chr1 199711074 199711578 -42952775 - L1PA2 LINE L1 -2 6153 5652 1924 137 0 4 chr1 199711636 199711913 -42952440 + AluSx SINE Alu 14 289 -23 21 0 0 0 chr1 199713144 199713165 -42951188 + AT_rich Low_complexity Low_complexity 1 21 0 236 254 21 148 chr1 199714026 199714262 -42950091 + L2 LINE L2 3081 3286 -27 1735 165 49 0 chr1 199714344 199714629 -42949724 + AluJo SINE Alu 1 299 -13 2363 228 39 32 chr1 199715804 199716747 -42947606 + LTR27 LTR ERV1 1 953 -67 361 224 77 91 chr1 199716772 199716915 -42947438 + LTR27 LTR ERV1 496 636 0 904 154 84 172 chr1 199718176 199718408 -42945945 - MER66A LTR ERV1 -7 471 275 1999 141 26 7 chr1 199718408 199718714 -42945639 - AluSx SINE Alu 0 312 1 904 154 84 172 chr1 199718714 199718813 -42945540 - MER66A LTR ERV1 -203 275 169 468 228 118 8 chr1 199718788 199718915 -42945438 - MER41A LTR ERV1 -251 303 163 * 185 283 0 0 chr1 199719184 199719237 -42945116 + MIR SINE MIR 166 218 -44 1770 160 7 0 chr1 199719994 199720275 -42944078 - AluJb SINE Alu -28 284 2 1950 158 13 3 chr1 199720482 199720785 -42943568 - AluSx SINE Alu -6 306 1 2056 134 0 7 chr1 199720925 199721217 -42943136 - AluJb SINE Alu -22 290 1 365 140 0 0 chr1 199721358 199721408 -42942945 + 5S rRNA rRNA 2 51 -70 281 248 16 50 chr1 199721457 199721578 -42942775 - L1ME LINE L1 -545 5576 5460 263 330 17 9 chr1 199721957 199722072 -42942281 + L3 LINE CR1 1250 1365 -212 315 0 0 0 chr1 199722516 199722551 -42941802 + (TG)n Simple_repeat Simple_repeat 2 36 0 2116 132 0 0 chr1 199722687 199722991 -42941362 - AluSx SINE Alu -8 304 1 1797 166 7 3 chr1 199723897 199724193 -42940160 - AluJb SINE Alu -11 301 5 300 250 0 92 chr1 199724249 199724369 -42939984 - L1MCa LINE L1 -4323 2103 1995 1551 166 71 104 chr1 199724970 199725420 -42938933 + MLT1C LTR MaLR 1 435 -32 14455 140 30 14 chr1 199725420 199726353 -42938000 - Tigger1 DNA MER2_type 0 2418 1501 1846 157 3 0 chr1 199726353 199726639 -42937714 - AluSg SINE Alu 0 310 24 14455 140 30 14 chr1 199726639 199727282 -42937071 - Tigger1 DNA MER2_type -917 1501 870 1705 134 28 4 chr1 199727282 199727536 -42936817 - AluSq SINE Alu -53 260 1 14455 140 30 14 chr1 199727536 199728316 -42936037 - Tigger1 DNA MER2_type -1548 870 24 222 313 0 48 chr1 199729487 199729570 -42934783 - L2 LINE L2 0 3313 3235 504 316 77 26 chr1 199730373 199730607 -42933746 + L2 LINE L2 3063 3308 -5 273 202 11 22 chr1 199730687 199730776 -42933577 + GA-rich Low_complexity Low_complexity 2 89 0 198 91 0 0 chr1 199732342 199732375 -42931978 + (TG)n Simple_repeat Simple_repeat 2 34 0 316 237 11 65 chr1 199733633 199733726 -42930627 + MIR3 SINE MIR 84 171 -37 255 254 0 68 chr1 199734287 199734334 -42930019 + LTR33A LTR ERVL 408 457 -66 2107 139 108 8 chr1 199734334 199734723 -42929630 + MSTA LTR MaLR 1 428 0 255 254 0 68 chr1 199734723 199734793 -42929560 + LTR33A LTR ERVL 457 517 -6 257 294 104 75 chr1 199734796 199734909 -42929444 + MIR SINE MIR 21 144 -118 1737 181 0 13 chr1 199734909 199735208 -42929145 + AluJb SINE Alu 1 295 -17 257 294 104 75 chr1 199735208 199735295 -42929058 + MIR SINE MIR 144 227 -35 267 243 92 18 chr1 199736832 199736921 -42927432 + L1MEc LINE L1 1269 1350 -5046 1801 142 4 0 chr1 199736921 199737188 -42927165 + AluSq SINE Alu 1 268 -45 267 243 92 18 chr1 199737188 199737316 -42927037 + L1MEc LINE L1 1350 1502 -4894 364 359 14 7 chr1 199737321 199737466 -42926887 + L1MEc LINE L1 1664 1809 -4587 2155 158 5 53 chr1 199737596 199738045 -42926308 + MER54A LTR ERVL 474 900 -1 3578 239 107 70 chr1 199738070 199738124 -42926229 + L1MEc LINE L1 1866 1917 -4298 2253 163 25 0 chr1 199738124 199738517 -42925836 + MER57A LTR ERV1 1 403 0 3578 239 107 70 chr1 199738517 199739271 -42925082 + L1MEc LINE L1 1917 2642 -3573 1342 186 91 82 chr1 199739271 199739734 -42924619 + MLT1C LTR MaLR 1 467 0 3578 239 107 70 chr1 199739734 199740948 -42923405 + L1MEc LINE L1 2642 3977 -2238 206 32 32 0 chr1 199740948 199740979 -42923374 + (CA)n Simple_repeat Simple_repeat 1 32 0 3578 239 107 70 chr1 199740979 199741868 -42922485 + L1MEc LINE L1 3977 4832 -1383 528 219 0 32 chr1 199742061 199742184 -42922169 - FRAM SINE Alu -30 146 28 7945 30 8 0 chr1 199742306 199743355 -42920998 + L1P LINE L1 2259 3315 -2831 4383 171 40 25 chr1 199743361 199744298 -42920055 - L1P LINE L1 -5184 962 12 1870 213 44 8 chr1 199745404 199745999 -42918354 - L1M4 LINE L1 -2848 3298 2683 272 294 129 18 chr1 199746014 199746177 -42918176 - L1ME LINE L1 -5888 182 2 2745 114 19 5 chr1 199746944 199747365 -42916988 + MSTA LTR MaLR 1 427 -1 1207 197 71 57 chr1 199747511 199747567 -42916786 + Charlie1b DNA MER1_type 81 135 -2626 221 0 0 33 chr1 199747567 199747597 -42916756 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2210 71 0 0 chr1 199747597 199747879 -42916474 - AluY SINE Alu -28 283 2 1207 197 71 57 chr1 199747879 199748099 -42916254 + Charlie1b DNA MER1_type 135 369 -2392 1294 191 131 0 chr1 199748099 199748366 -42915987 + AluJo SINE Alu 1 302 0 1207 197 71 57 chr1 199748366 199748524 -42915829 + Charlie1b DNA MER1_type 369 523 0 612 298 126 0 chr1 199748984 199749199 -42915154 + MIR SINE MIR 21 262 0 1305 219 95 33 chr1 199749627 199750047 -42914306 + MSTB2 LTR MaLR 1 446 -11 26 0 0 0 chr1 199752615 199752641 -42911712 + AT_rich Low_complexity Low_complexity 1 26 0 2017 93 0 4 chr1 199752751 199753010 -42911343 + AluSc SINE Alu 1 258 -51 221 297 42 71 chr1 199753661 199753861 -42910492 + L2 LINE L2 2174 2369 -945 192 77 0 0 chr1 199753861 199753887 -42910466 + (CA)n Simple_repeat Simple_repeat 2 27 0 221 297 42 71 chr1 199753887 199753898 -42910455 + L2 LINE L2 2369 2379 -935 312 349 48 24 chr1 199753960 199754169 -42910184 + L2 LINE L2 2584 2797 -517 197 304 88 76 chr1 199754543 199754806 -42909547 + L2 LINE L2 2828 3093 -179 1088 161 4 70 chr1 199755660 199755675 -42908678 - AluJb SINE Alu -12 300 286 408 20 0 0 chr1 199755675 199755724 -42908629 + (TG)n Simple_repeat Simple_repeat 2 50 0 1088 161 4 70 chr1 199755724 199755938 -42908415 - AluJb SINE Alu -26 286 86 337 300 67 22 chr1 199756466 199756646 -42907707 - L2 LINE L2 -236 3077 2890 268 227 227 0 chr1 199756773 199756848 -42907505 - L2 LINE L2 -9 3304 3213 1028 187 6 6 chr1 199757161 199757343 -42907010 - AluJb SINE Alu -5 307 126 2471 75 3 3 chr1 199758156 199758462 -42905891 + AluSc SINE Alu 1 306 -3 180 299 103 26 chr1 199758821 199758938 -42905415 - MIR3 SINE MIR -9 199 74 498 138 12 0 chr1 199759039 199759119 -42905234 + AluJb SINE Alu 211 291 -21 2238 68 0 55 chr1 199760035 199760345 -42904008 + AluY SINE Alu 1 293 -18 289 265 121 8 chr1 199760541 199760673 -42903680 + L1ME4a LINE L1 5930 6076 -45 6408 62 2 1 chr1 199761178 199762132 -42902221 + HERVK LTR ERVK 1728 2715 -4528 * 17988 46 5 1 chr1 199762110 199764394 -42899959 + HERVK LTR ERVK 4951 7243 0 7369 92 8 2 chr1 199764394 199765357 -42898996 + LTR5 LTR ERVK 1 969 0 3396 65 5 7 chr1 199766269 199766718 -42897635 + LTR7 LTR ERV1 1 448 -2 187 226 38 19 chr1 199766857 199766910 -42897443 + L2 LINE L2 3217 3270 -2 24 0 0 0 chr1 199767132 199767156 -42897197 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr1 199767195 199767223 -42897130 + AT_rich Low_complexity Low_complexity 1 28 0 2453 56 3 35 chr1 199767643 199767962 -42896391 - AluY SINE Alu -2 309 1 1095 198 37 5 chr1 199768968 199769185 -42895168 - MER58A DNA MER1_type 0 224 1 478 289 77 19 chr1 199770541 199770697 -42893656 - MIR SINE MIR -96 166 2 287 333 58 69 chr1 199771828 199772017 -42892336 + MIR SINE MIR 20 206 -56 1177 241 9 25 chr1 199772389 199772705 -42891648 + MLT1A1 LTR MaLR 5 315 -50 687 221 0 0 chr1 199772716 199772838 -42891515 - FLAM_A SINE Alu -11 122 1 629 276 75 22 chr1 199773053 199773321 -42891032 - L2 LINE L2 0 3313 3032 2170 128 0 6 chr1 199773400 199773712 -42890641 - AluSq SINE Alu -3 310 1 2140 192 87 88 chr1 199774251 199774979 -42889374 + LTR8A LTR ERV1 1 727 0 1447 404 0 0 chr1 199776242 199776554 -42887799 + AluSx SINE Alu 1 312 0 459 0 0 0 chr1 199776842 199776893 -42887460 + (TG)n Simple_repeat Simple_repeat 2 52 0 1877 156 0 10 chr1 199776893 199777181 -42887172 - AluSx SINE Alu -27 285 1 25 31 0 0 chr1 199777189 199777221 -42887132 + AT_rich Low_complexity Low_complexity 1 32 0 308 187 57 11 chr1 199777916 199778009 -42886344 + MIR SINE MIR 57 157 -61 21 0 0 0 chr1 199778691 199778712 -42885641 + AT_rich Low_complexity Low_complexity 1 21 0 460 331 115 44 chr1 199778817 199779201 -42885152 - L1ME4a LINE L1 -259 5862 5452 2061 112 0 4 chr1 199779213 199779489 -42884864 - AluSq SINE Alu -38 275 1 2234 108 20 0 chr1 199781073 199781379 -42882974 - AluSx SINE Alu 0 312 1 2390 73 20 0 chr1 199781414 199781714 -42882639 - AluSc SINE Alu -1 308 3 387 272 121 35 chr1 199781872 199782045 -42882308 + MER5A DNA MER1_type 2 189 0 27 29 0 0 chr1 199782990 199783024 -42881329 + AT_rich Low_complexity Low_complexity 1 34 0 272 231 24 173 chr1 199784042 199784297 -42880056 + L2 LINE L2 3081 3297 -16 1848 163 37 0 chr1 199784364 199784659 -42879694 + AluJo SINE Alu 1 306 -6 2048 223 33 49 chr1 199785869 199786937 -42877416 + LTR27 LTR ERV1 3 636 0 205 274 0 20 chr1 199788042 199788093 -42876260 - MIR SINE MIR -143 65 16 1866 111 34 0 chr1 199788445 199788742 -42875611 + L1MA1 LINE L1 5995 6301 -1 1693 178 4 0 chr1 199788916 199789223 -42875130 + AluJo SINE Alu 6 313 0 197 193 0 18 chr1 199789260 199789317 -42875036 + (TA)n Simple_repeat Simple_repeat 2 57 0 391 282 8 0 chr1 199789547 199789664 -42874689 + MIR SINE MIR 89 206 -56 21 0 0 0 chr1 199790484 199790505 -42873848 + AT_rich Low_complexity Low_complexity 1 21 0 511 271 51 8 chr1 199791377 199791613 -42872740 - L1ME LINE L1 -370 5751 5506 388 316 26 0 chr1 199792088 199792205 -42872148 + L3 LINE CR1 1246 1365 -212 1603 236 97 21 chr1 199793105 199793580 -42870773 + MLT1J LTR MaLR 1 511 0 2062 121 51 53 chr1 199794043 199794171 -42870182 - L1MA7 LINE L1 0 6291 6164 306 0 0 0 chr1 199794171 199794205 -42870148 + (TG)n Simple_repeat Simple_repeat 1 34 0 2062 121 51 53 chr1 199794205 199794253 -42870100 - L1MA7 LINE L1 -127 6164 6117 1703 195 19 3 chr1 199794253 199794560 -42869793 - AluJb SINE Alu 0 312 1 2062 121 51 53 chr1 199794560 199794796 -42869557 - L1MA7 LINE L1 -174 6117 5879 384 325 67 18 chr1 199795258 199795599 -42868754 + L1ME LINE L1 5268 5625 -496 701 183 10 1 chr1 199796179 199796331 -42868022 + L1MA7 LINE L1 5839 5997 -184 264 295 114 10 chr1 199796411 199796709 -42867644 - L1ME LINE L1 -1500 4646 4318 1016 226 121 8 chr1 199797369 199797634 -42866719 + MLT1F1 LTR MaLR 1 295 -272 2047 156 34 23 chr1 199797649 199798152 -42866201 + L1M3 LINE L1 5174 5683 -497 24 32 0 0 chr1 199798483 199798514 -42865839 + AT_rich Low_complexity Low_complexity 1 31 0 563 314 45 18 chr1 199798663 199798883 -42865470 + MIR SINE MIR 6 231 -31 783 282 52 0 chr1 199799344 199799557 -42864796 + MER58A DNA MER1_type 1 224 0 632 271 64 63 chr1 199799802 199800408 -42863945 - L1MC4a LINE L1 -841 5459 5289 2338 84 0 0 chr1 199800825 199801122 -42863231 + AluSc SINE Alu 1 297 -12 3794 196 24 6 chr1 199801274 199802121 -42862232 - L1MB4 LINE L1 0 6180 5319 424 198 0 0 chr1 199802130 199802216 -42862137 - L1MB4 LINE L1 -1684 4462 4377 43 81 0 0 chr1 199802424 199802523 -42861830 + AT_rich Low_complexity Low_complexity 1 99 0 193 92 46 31 chr1 199802691 199802756 -42861597 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 505 189 17 80 chr1 199802842 199802887 -42861466 - Charlie1 DNA MER1_type -5 2756 2710 2282 73 3 3 chr1 199802887 199803213 -42861140 - AluSp SINE Alu 0 326 1 505 189 17 80 chr1 199803213 199803341 -42861012 - Charlie1 DNA MER1_type -51 2710 2593 264 91 0 0 chr1 199803455 199803499 -42860854 + (TA)n Simple_repeat Simple_repeat 1 44 0 182 125 0 25 chr1 199804276 199804316 -42860037 + (TG)n Simple_repeat Simple_repeat 2 40 0 3218 65 2 0 chr1 199804926 199805339 -42859014 - L1PA7 LINE L1 -2 6152 5739 996 61 0 0 chr1 199805341 199805473 -42858880 + L1PA7 LINE L1 5602 5733 -421 378 217 0 0 chr1 199805464 199805547 -42858806 - L1MB4 LINE L1 -2561 3585 3503 * 28450 102 9 13 chr1 199806625 199811156 -42853197 - L1P LINE L1 -755 5391 879 1706 126 38 8 chr1 199812019 199812310 -42852043 + AluSx SINE Alu 14 312 0 757 148 0 30 chr1 199812723 199812858 -42851495 - FLAM_C SINE Alu -10 133 3 1314 214 77 55 chr1 199813534 199813991 -42850362 + MLT1C LTR MaLR 1 467 0 1826 168 10 3 chr1 199814040 199814330 -42850023 + AluJb SINE Alu 1 295 -17 216 0 0 0 chr1 199814330 199814354 -42849999 + (CA)n Simple_repeat Simple_repeat 1 24 0 1826 168 10 3 chr1 199814354 199814373 -42849980 + AluJb SINE Alu 295 312 0 805 167 8 0 chr1 199814497 199814623 -42849730 - FLAM_C SINE Alu -16 127 1 209 260 0 0 chr1 199815343 199815393 -42848960 + CT-rich Low_complexity Low_complexity 2 51 0 255 290 29 14 chr1 199816149 199816218 -42848135 - L2 LINE L2 0 3272 3203 2523 251 110 22 chr1 199816952 199817854 -42846499 + L2 LINE L2 1672 2652 -662 557 224 87 16 chr1 199817932 199818115 -42846238 + L2 LINE L2 3118 3313 0 547 168 17 0 chr1 199819020 199819139 -42845214 + (TA)n Simple_repeat Simple_repeat 1 121 0 252 266 0 43 chr1 199819140 199819234 -42845119 - L1MC4 LINE L1 -1339 6703 6614 247 215 43 0 chr1 199819242 199819335 -42845018 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 228 280 0 43 chr1 199819344 199819437 -42844916 - L1MC4 LINE L1 -1339 6703 6615 180 111 0 0 chr1 199820037 199820064 -42844289 + (A)n Simple_repeat Simple_repeat 1 27 0 197 278 74 0 chr1 199820357 199820411 -42843942 - MIR SINE MIR -108 100 43 954 197 117 49 chr1 199820660 199821051 -42843302 - MER66B LTR ERV1 -5 481 108 539 216 0 0 chr1 199821567 199821664 -42842689 + FRAM SINE Alu 57 153 -23 23 33 0 0 chr1 199821667 199821697 -42842656 + AT_rich Low_complexity Low_complexity 1 30 0 188 233 47 0 chr1 199821715 199821758 -42842595 + L3b LINE CR1 1535 1579 -4 417 291 53 35 chr1 199821806 199822033 -42842320 + MIR SINE MIR 3 233 -29 1866 160 11 0 chr1 199822775 199823056 -42841297 - AluSx SINE Alu -28 284 1 212 0 36 0 chr1 199823266 199823294 -42841059 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2100 115 0 0 chr1 199823296 199823575 -42840778 - AluSx SINE Alu -33 279 1 1914 157 0 7 chr1 199823715 199824008 -42840345 - AluJb SINE Alu -21 291 1 373 100 0 0 chr1 199824145 199824195 -42840158 + 5S rRNA rRNA 2 51 -70 389 269 23 23 chr1 199824732 199824862 -42839491 + L3 LINE CR1 1236 1365 -212 279 0 0 0 chr1 199825310 199825341 -42839012 + (TG)n Simple_repeat Simple_repeat 2 32 0 1663 197 3 3 chr1 199826393 199826687 -42837666 - AluJb SINE Alu -12 300 7 1292 205 61 79 chr1 199827431 199827874 -42836479 + MLT1C LTR MaLR 1 435 -32 898 168 6 6 chr1 199827874 199828041 -42836312 - Tigger1 DNA MER2_type 0 2418 2252 2030 123 7 3 chr1 199828237 199828529 -42835824 - AluSq SINE Alu -20 293 1 315 237 11 65 chr1 199829966 199830059 -42834294 + MIR3 SINE MIR 84 171 -37 1981 143 117 10 chr1 199830649 199831035 -42833318 + MSTA LTR MaLR 2 428 0 225 294 112 70 chr1 199831108 199831219 -42833134 + MIR SINE MIR 21 126 -136 1637 181 3 13 chr1 199831219 199831517 -42832836 + AluJb SINE Alu 1 295 -17 225 294 112 70 chr1 199831517 199831619 -42832734 + MIR SINE MIR 126 243 -19 1870 173 3 0 chr1 199832329 199832612 -42831741 - AluSx SINE Alu -28 284 1 2093 138 7 0 chr1 199832820 199833118 -42831235 - AluSx SINE Alu -12 300 1 1849 161 3 7 chr1 199833256 199833547 -42830806 - AluJb SINE Alu -22 290 1 353 120 0 0 chr1 199833684 199833734 -42830619 + 5S rRNA rRNA 2 51 -70 266 248 17 43 chr1 199833787 199833904 -42830449 - L1ME LINE L1 -548 5573 5460 368 300 15 15 chr1 199834277 199834407 -42829946 + L3 LINE CR1 1236 1365 -212 276 30 0 0 chr1 199834855 199834888 -42829465 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr1 199835464 199835485 -42828868 + AT_rich Low_complexity Low_complexity 1 21 0 1706 186 0 3 chr1 199835957 199836252 -42828101 - AluJb SINE Alu -12 300 7 293 0 0 26 chr1 199836351 199836389 -42827964 + (TA)n Simple_repeat Simple_repeat 1 37 0 1329 201 61 79 chr1 199837016 199837459 -42826894 + MLT1C LTR MaLR 1 435 -32 13450 139 34 1 chr1 199837459 199839779 -42824574 - Tigger1 DNA MER2_type 0 2418 24 533 160 11 0 chr1 199841316 199841410 -42822943 - AluSq/x SINE Alu -179 133 39 1063 165 0 0 chr1 199841416 199841580 -42822773 - AluJb SINE Alu -16 296 133 276 333 0 0 chr1 199842597 199842681 -42821672 - L2 LINE L2 0 3272 3189 405 167 14 0 chr1 199843338 199843410 -42820943 - AluSq/x SINE Alu -202 111 39 1076 158 0 0 chr1 199843416 199843580 -42820773 - AluJb SINE Alu -16 296 133 283 316 0 0 chr1 199844603 199844682 -42819671 - L2 LINE L2 0 3313 3235 459 342 69 4 chr1 199845496 199845727 -42818626 + L2 LINE L2 3063 3308 -5 359 165 0 46 chr1 199845802 199845911 -42818442 + GA-rich Low_complexity Low_complexity 2 105 0 2095 125 0 3 chr1 199847315 199847610 -42816743 - AluSq SINE Alu -19 294 1 184 349 38 19 chr1 199848361 199848467 -42815886 - MIR SINE MIR -57 151 44 296 247 11 65 chr1 199849047 199849140 -42815213 + MIR3 SINE MIR 84 171 -37 2090 149 86 10 chr1 199849731 199850128 -42814225 + MSTA LTR MaLR 2 428 0 1657 191 0 14 chr1 199850312 199850606 -42813747 + AluJb SINE Alu 1 290 -22 234 253 96 0 chr1 199850630 199850713 -42813640 + MIR SINE MIR 153 243 -19 26 0 0 0 chr1 199852229 199852255 -42812098 + AT_rich Low_complexity Low_complexity 1 26 0 336 333 39 63 chr1 199852716 199852923 -42811430 + L1ME3 LINE L1 610 811 -5394 1850 164 3 29 chr1 199853035 199853163 -42811190 + AluJb SINE Alu 5 135 -177 240 35 0 0 chr1 199853163 199853192 -42811161 + (TA)n Simple_repeat Simple_repeat 1 29 0 1850 164 3 29 chr1 199853192 199853375 -42810978 + AluJb SINE Alu 135 308 -4 382 277 77 50 chr1 199853394 199853723 -42810630 + L1ME3 LINE L1 1021 1340 -5056 1957 147 0 22 chr1 199853723 199854043 -42810310 + AluSq SINE Alu 1 313 0 382 277 77 50 chr1 199854043 199854333 -42810020 + L1ME3 LINE L1 1340 1809 -4587 2187 157 13 47 chr1 199854459 199854906 -42809447 + MER54A LTR ERVL 468 899 -2 3861 242 122 61 chr1 199854943 199854978 -42809375 + L1ME3 LINE L1 1883 1914 -4301 2195 157 28 3 chr1 199854978 199855366 -42808987 + MER57A LTR ERV1 2 399 -4 3861 242 122 61 chr1 199855366 199856074 -42808279 + L1ME3 LINE L1 1914 2577 -3638 1370 196 79 59 chr1 199856074 199856532 -42807821 + MLT1C LTR MaLR 1 467 0 3861 242 122 61 chr1 199856532 199858780 -42805573 + L1ME3 LINE L1 2577 5007 -1208 1767 151 18 25 chr1 199858781 199859065 -42805288 - AluJo SINE Alu -30 282 1 372 244 120 25 chr1 199859067 199859309 -42805044 + L1ME3 LINE L1 5156 5420 -795 1006 265 46 3 chr1 199859331 199859659 -42804694 + L1ME3 LINE L1 5856 6197 -34 323 299 0 0 chr1 199859699 199859786 -42804567 - L1MC4 LINE L1 -1339 6703 6617 316 226 21 65 chr1 199859746 199859839 -42804514 + L1MC4 LINE L1 6615 6703 -1339 * 322 237 0 43 chr1 199859838 199859931 -42804422 - L1MC4 LINE L1 -1340 6702 6614 * 352 264 23 0 chr1 199859884 199859971 -42804382 + L1MC4 LINE L1 6615 6703 -1339 407 242 71 25 chr1 199860026 199860224 -42804129 + L1M4 LINE L1 3495 3701 -2445 232 204 0 0 chr1 199860249 199860298 -42804055 + L1MB5 LINE L1 6040 6088 -86 1026 163 6 5 chr1 199860298 199860615 -42803738 - MLT1A1 LTR MaLR 0 365 1 453 155 0 0 chr1 199860615 199860699 -42803654 + L1MB7 LINE L1 6083 6166 -18 699 270 42 45 chr1 199860732 199861158 -42803195 + L1M4 LINE L1 3765 4189 -1957 402 115 0 0 chr1 199861158 199861219 -42803134 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 1557 38 0 0 chr1 199861321 199861559 -42802794 + (C)n Simple_repeat Simple_repeat 1 238 0 198 103 0 0 chr1 199861575 199861604 -42802749 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 21 0 0 0 chr1 199861627 199861648 -42802705 + AT_rich Low_complexity Low_complexity 1 21 0 583 256 22 27 chr1 199861648 199861841 -42802512 + MLT2E LTR ERVL 3 194 -434 1772 283 38 12 chr1 199861842 199862426 -42801927 + ERVL LTR ERVL 1341 1939 -3825 248 238 105 28 chr1 199862840 199862983 -42801370 - L1ME4a LINE L1 -187 5934 5781 271 300 126 26 chr1 199863092 199863362 -42800991 - L1ME4a LINE L1 -373 5748 5452 241 344 30 23 chr1 199863530 199863661 -42800692 + L3 LINE CR1 1234 1365 -212 1967 151 7 7 chr1 199864202 199864544 -42799809 + AluJb SINE Alu 8 349 0 669 47 0 0 chr1 199864661 199864746 -42799607 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 1956 134 28 0 chr1 199865230 199865538 -42798815 - AluSq SINE Alu 0 316 1 1791 134 17 0 chr1 199866412 199866702 -42797651 - LTR24 LTR ERV1 -2 465 171 871 208 48 5 chr1 199866747 199866954 -42797399 - L1MD2 LINE L1 -12 6347 6132 4834 141 8 29 chr1 199866994 199867817 -42796536 - L1MC1 LINE L1 -5 6328 5523 1206 195 71 95 chr1 199867829 199868280 -42796073 + MLT1C LTR MaLR 23 462 -5 2153 112 3 3 chr1 199869617 199869912 -42794441 - AluSx SINE Alu -13 299 5 1800 145 3 37 chr1 199870009 199870306 -42794047 + AluSx SINE Alu 4 290 -22 2017 150 40 9 chr1 199870338 199870665 -42793688 - MER1B DNA MER1_type 0 337 1 332 289 49 23 chr1 199870906 199871172 -42793181 - L1M4 LINE L1 -3528 2618 2346 2138 142 3 3 chr1 199871251 199871604 -42792749 - MER44D DNA MER2_type 0 605 381 2130 157 115 17 chr1 199871681 199872141 -42792212 + MLT1D LTR MaLR 1 505 0 410 270 88 0 chr1 199872191 199872328 -42792025 + MIR SINE MIR 54 202 -60 246 294 157 15 chr1 199872836 199873040 -42791313 + L2 LINE L2 2818 3050 -222 262 143 0 0 chr1 199873046 199873088 -42791265 + 5S rRNA rRNA 1 42 -79 370 338 95 7 chr1 199873394 199873542 -42790811 - MER5A DNA MER1_type -28 161 1 601 252 23 57 chr1 199874059 199874321 -42790032 - L1ME1 LINE L1 -5 6161 5909 1789 219 52 6 chr1 199874437 199874913 -42789440 - L1ME1 LINE L1 -239 5925 5428 27 0 0 0 chr1 199875156 199875183 -42789170 + AT_rich Low_complexity Low_complexity 1 27 0 910 268 17 59 chr1 199875248 199875707 -42788646 - Charlie7 DNA MER1_type -1891 721 282 261 215 13 51 chr1 199875764 199875843 -42788510 - Charlie7 DNA MER1_type -2429 183 108 1356 208 51 75 chr1 199875843 199876577 -42787776 - L1MCa LINE L1 -3407 3019 2317 2268 116 3 0 chr1 199876577 199876888 -42787465 - AluSx SINE Alu 0 312 1 1356 208 51 75 chr1 199876888 199877112 -42787241 - L1MCa LINE L1 -4109 2317 2089 396 272 39 50 chr1 199877285 199877465 -42786888 - MIR SINE MIR -50 212 35 226 277 215 16 chr1 199878612 199878747 -42785606 - MIR SINE MIR -55 153 20 426 332 99 11 chr1 199879696 199879958 -42784395 - L2 LINE L2 -542 2772 2488 313 26 0 0 chr1 199880011 199880050 -42784303 - L1PA4 LINE L1 -264 5891 5853 1777 37 0 0 chr1 199880051 199880267 -42784086 + L1PA5 LINE L1 5938 6153 -1 25 83 0 0 chr1 199880288 199880348 -42784005 + AT_rich Low_complexity Low_complexity 1 60 0 216 0 0 0 chr1 199880446 199880470 -42783883 + (TTG)n Simple_repeat Simple_repeat 1 24 0 882 181 6 0 chr1 199880646 199880823 -42783530 - L1MA6 LINE L1 -233 6067 5890 3218 301 50 12 chr1 199881029 199882154 -42782199 + L2 LINE L2 524 1690 -1624 789 313 56 51 chr1 199882148 199882560 -42781793 + L2 LINE L2 2898 3311 -2 * 912 299 74 47 chr1 199882705 199882788 -42781565 + MLT1K LTR MaLR 41 120 -468 1166 209 5 0 chr1 199882788 199883003 -42781350 - MER20 DNA MER1_type -3 216 1 912 299 74 47 chr1 199883003 199883447 -42780906 + MLT1K LTR MaLR 120 582 -6 643 153 18 0 chr1 199883784 199883895 -42780458 + L1M3 LINE L1 5629 5741 -430 2237 141 83 8 chr1 199883895 199884293 -42780060 + MSTA LTR MaLR 1 428 0 768 115 0 0 chr1 199884293 199884406 -42779947 + MSTA-int LTR MaLR 1 113 -1538 1004 112 10 17 chr1 199884408 199884601 -42779752 + MSTA LTR MaLR 16 248 -180 1580 181 59 39 chr1 199884714 199884932 -42779421 - L1MCa LINE L1 -3949 2477 2307 2078 123 20 0 chr1 199884932 199885233 -42779120 - AluSx SINE Alu -5 307 1 1580 181 59 39 chr1 199885233 199885459 -42778894 - L1MCa LINE L1 -4119 2307 2087 350 283 44 56 chr1 199885653 199885833 -42778520 - MIR SINE MIR -50 212 35 235 285 189 20 chr1 199886786 199886958 -42777395 - MIR SINE MIR -37 225 28 412 324 121 8 chr1 199887914 199888170 -42776183 - L2 LINE L2 -542 2772 2488 4507 156 16 4 chr1 199888290 199889171 -42775182 - L1MA6 LINE L1 -239 6061 5170 273 102 0 41 chr1 199889167 199889216 -42775137 + L1MA6 LINE L1 6252 6298 -2 * 940 223 128 1 chr1 199889257 199889675 -42774678 + MLT1D LTR MaLR 2 500 -5 258 340 52 13 chr1 199889760 199889913 -42774440 - L2 LINE L2 -2939 375 217 3316 78 13 0 chr1 199890006 199890454 -42773899 - L1PA13 LINE L1 -1 6162 5709 525 224 20 34 chr1 199890458 199890605 -42773748 - Charlie4 DNA MER1_type -1 1960 1816 2188 101 7 0 chr1 199891180 199891467 -42772886 + AluSg SINE Alu 2 290 -20 2255 84 0 3 chr1 199891532 199891818 -42772535 + AluY SINE Alu 15 299 -12 182 277 48 24 chr1 199892547 199892630 -42771723 - MIR3 SINE MIR -42 166 82 17354 49 9 1 chr1 199893092 199895231 -42769122 + L1P LINE L1 1 2157 -3989 24 32 0 0 chr1 199895833 199895864 -42768489 + GC_rich Low_complexity Low_complexity 1 31 0 305 249 298 29 chr1 199896692 199896897 -42767456 + L1ME4a LINE L1 5649 5908 -213 213 39 0 0 chr1 199896929 199896955 -42767398 + (TA)n Simple_repeat Simple_repeat 1 26 0 1290 134 0 25 chr1 199897929 199898131 -42766222 + MSTA LTR MaLR 232 428 0 2338 133 28 32 chr1 199898131 199898567 -42765786 + L1MB2 LINE L1 5737 6170 -1 189 80 20 140 chr1 199899947 199899997 -42764356 - L2 LINE L2 0 3313 3270 2279 103 0 0 chr1 199900189 199900489 -42763864 - AluSc SINE Alu -9 300 1 225 356 102 19 chr1 199900513 199900729 -42763624 + MIR SINE MIR 19 252 -10 3389 239 95 113 chr1 199900748 199901392 -42762961 + L2 LINE L2 1232 1886 -1427 986 167 0 0 chr1 199901392 199901548 -42762805 + AluSg/x SINE Alu 147 302 -10 3389 239 95 113 chr1 199901548 199902580 -42761773 + L2 LINE L2 1886 3015 -298 2340 115 0 0 chr1 199902580 199902892 -42761461 - AluSx SINE Alu 0 312 1 3389 239 95 113 chr1 199902892 199903054 -42761299 + L2 LINE L2 3015 3178 -135 1914 97 4 0 chr1 199903495 199903754 -42760599 - L1PA7 LINE L1 -3 6151 5892 422 307 101 80 chr1 199906004 199906330 -42758023 + L2 LINE L2 2924 3256 -16 324 304 124 95 chr1 199906736 199907730 -42756623 + L1M4 LINE L1 4030 5052 -1094 252 236 169 7 chr1 199907794 199907942 -42756411 + L1ME LINE L1 4476 4647 -1499 332 268 84 22 chr1 199908141 199908320 -42756033 + L1ME LINE L1 5556 5745 -376 375 187 0 11 chr1 199908737 199908828 -42755525 + L1MA6 LINE L1 6211 6300 0 2348 53 0 3 chr1 199908971 199909278 -42755075 + AluY SINE Alu 1 306 0 943 336 109 27 chr1 199909454 199910415 -42753938 - L2 LINE L2 -5 3308 2275 368 284 0 0 chr1 199910504 199910592 -42753761 - MIR SINE MIR -172 90 3 275 224 158 36 chr1 199910925 199911090 -42753263 + LTR33A LTR ERVL 322 506 -17 246 321 46 69 chr1 199911453 199911584 -42752769 + L2 LINE L2 3136 3263 -9 2298 126 24 21 chr1 199912394 199912768 -42751585 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr1 199914567 199914595 -42749758 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr1 199914887 199914935 -42749418 + AT_rich Low_complexity Low_complexity 1 48 0 27 0 0 0 chr1 199916530 199916557 -42747796 + AT_rich Low_complexity Low_complexity 1 27 0 2222 94 10 0 chr1 199916935 199917243 -42747110 + L1P3 LINE L1 5433 5743 -429 873 319 27 3 chr1 199917414 199917709 -42746644 - L1MEc LINE L1 -5906 490 189 1985 142 0 3 chr1 199918550 199918838 -42745515 + AluSx SINE Alu 1 287 -25 6621 68 7 2 chr1 199920916 199921784 -42742569 - L1PA7 LINE L1 -16 6138 5267 286 336 98 0 chr1 199922391 199922513 -42741840 + MIR SINE MIR 18 151 -111 553 225 29 0 chr1 199923095 199923233 -42741120 - Charlie1 DNA MER1_type 0 2761 2620 * 751 262 9 37 chr1 199923227 199923441 -42740912 - Charlie1 DNA MER1_type -2534 227 20 27 0 0 0 chr1 199923759 199923786 -42740567 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr1 199924868 199924897 -42739456 + AT_rich Low_complexity Low_complexity 1 29 0 201 129 0 0 chr1 199925352 199925383 -42738970 + (TG)n Simple_repeat Simple_repeat 2 32 0 3544 146 8 1 chr1 199925732 199926348 -42738005 + HSMAR2 DNA Mariner 4 657 -645 29 28 0 0 chr1 199926905 199926941 -42737412 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 199928352 199928374 -42735979 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 199928441 199928481 -42735872 + AT_rich Low_complexity Low_complexity 1 40 0 236 29 0 0 chr1 199928775 199928810 -42735543 + Alu SINE Alu 261 295 -4 2164 98 10 0 chr1 199928856 199929151 -42735202 - AluY SINE Alu -13 298 1 22 0 0 0 chr1 199929252 199929274 -42735079 + AT_rich Low_complexity Low_complexity 1 22 0 196 355 36 36 chr1 199929703 199929813 -42734540 - MIR SINE MIR -71 137 28 22 0 0 0 chr1 199931417 199931439 -42732914 + AT_rich Low_complexity Low_complexity 1 22 0 860 147 0 22 chr1 199931627 199931763 -42732590 + FLAM_C SINE Alu 1 133 0 1720 188 10 16 chr1 199932186 199932500 -42731853 - AluJo SINE Alu 0 312 1 2634 111 6 0 chr1 199933280 199933642 -42730711 + THE1B LTR MaLR 1 364 0 871 267 5 14 chr1 199933649 199933859 -42730494 + MIR SINE MIR 47 254 -8 268 276 189 8 chr1 199934812 199934939 -42729414 - MER102b DNA MER1_type -4 337 188 2127 142 0 0 chr1 199938472 199938774 -42725579 - AluY SINE Alu -9 302 1 344 312 51 7 chr1 199938820 199938958 -42725395 - MIR SINE MIR -113 149 6 207 0 0 0 chr1 199940176 199940199 -42724154 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1558 94 40 13 chr1 199942277 199942501 -42721852 + MER30 DNA MER1_type 1 230 0 488 268 68 18 chr1 199944576 199944773 -42719580 + MIR SINE MIR 37 245 -17 2339 106 3 0 chr1 199945510 199945821 -42718532 + AluSx SINE Alu 1 312 0 503 66 13 0 chr1 199947026 199947102 -42717251 + L1PA10 LINE L1 6092 6168 0 287 339 131 26 chr1 199948077 199948421 -42715932 + L2 LINE L2 2599 2982 -290 237 370 14 43 chr1 199948508 199948646 -42715707 + L2 LINE L2 3136 3269 -3 281 171 14 14 chr1 199949585 199949655 -42714698 - L1MA10 LINE L1 -10 6324 6255 2218 154 45 39 chr1 199951365 199951807 -42712546 + MER65A LTR ERV1 1 445 0 2225 296 124 43 chr1 199951834 199952639 -42711714 - L2 LINE L2 -51 3262 2523 432 0 0 0 chr1 199952639 199952687 -42711666 + (TG)n Simple_repeat Simple_repeat 2 49 0 2225 296 124 43 chr1 199952687 199953497 -42710856 - L2 LINE L2 -790 2523 1494 577 286 205 20 chr1 199953508 199954021 -42710332 - L2 LINE L2 -9 3304 2710 219 331 55 48 chr1 199954274 199954419 -42709934 + MER5A DNA MER1_type 39 184 -5 372 176 133 25 chr1 199955346 199955460 -42708893 - MIR3 SINE MIR -24 184 73 222 213 0 0 chr1 199956725 199956772 -42707581 + (CTATG)n Simple_repeat Simple_repeat 4 50 0 1013 233 43 105 chr1 199956889 199957443 -42706910 - L1MC4 LINE L1 -2 8040 7521 1529 226 126 30 chr1 199957447 199957907 -42706446 - MLT1F LTR MaLR -7 535 32 6119 214 95 35 chr1 199957910 199959854 -42704499 - L1MC4a LINE L1 -361 7447 5386 331 306 27 19 chr1 199959940 199960201 -42704152 - L1MC4a LINE L1 -906 5240 4978 987 299 45 49 chr1 199960306 199960939 -42703414 + L2 LINE L2 2690 3313 0 1627 143 29 4 chr1 199961316 199961589 -42702764 - AluJo SINE Alu -9 303 24 2411 70 0 0 chr1 199961644 199961945 -42702408 + AluY SINE Alu 1 301 -10 240 271 57 43 chr1 199961946 199962086 -42702267 + L1MB8 LINE L1 3921 4062 -2084 333 306 95 35 chr1 199962145 199963018 -42701335 + L1MB8 LINE L1 4415 5339 -807 357 24 0 0 chr1 199963096 199963138 -42701215 + (TG)n Simple_repeat Simple_repeat 2 43 0 357 95 14 27 chr1 199963142 199963216 -42701137 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 2960 186 48 36 chr1 199963373 199964089 -42700264 + L1MB8 LINE L1 5455 6178 0 620 323 33 31 chr1 199964215 199964788 -42699565 + L1 LINE L1 2431 3004 -3142 307 275 53 63 chr1 199964806 199965013 -42699340 + L1 LINE L1 3115 3319 -2827 21 0 0 0 chr1 199966709 199966730 -42697623 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 199966880 199966908 -42697445 + AT_rich Low_complexity Low_complexity 1 28 0 318 189 0 0 chr1 199966908 199966961 -42697392 - FLAM_A SINE Alu -10 123 71 189 0 0 0 chr1 199967466 199967487 -42696866 + (TC)n Simple_repeat Simple_repeat 2 22 0 249 33 0 0 chr1 199967498 199967528 -42696825 + (TG)n Simple_repeat Simple_repeat 1 30 0 211 309 206 0 chr1 199968276 199968344 -42696009 - MER91A DNA MER1_type -50 146 65 279 220 60 40 chr1 199968826 199968926 -42695427 + L1ME3A LINE L1 5558 5659 -503 314 262 76 41 chr1 199968933 199969078 -42695275 + L1ME3A LINE L1 5785 5934 -236 21 36 0 0 chr1 199969361 199969389 -42694964 + AT_rich Low_complexity Low_complexity 1 28 0 343 217 108 12 chr1 199969824 199969907 -42694446 + MER5B DNA MER1_type 3 93 -85 264 275 72 0 chr1 199969983 199970052 -42694301 - MER5B DNA MER1_type -16 162 89 418 90 45 0 chr1 199970159 199970226 -42694127 + MADE1 DNA Mariner 9 78 -2 373 172 0 16 chr1 199970243 199970307 -42694046 - MER5B DNA MER1_type -113 65 3 208 292 37 115 chr1 199970757 199971000 -42693353 + L2 LINE L2 2855 3078 -194 2245 113 7 0 chr1 199971167 199971477 -42692876 + AluSx SINE Alu 1 312 0 240 354 94 0 chr1 199971573 199971669 -42692684 - L2 LINE L2 0 3272 3168 2591 147 2 27 chr1 199971713 199972086 -42692267 - L1PB3 LINE L1 -9 6145 5783 1714 63 0 0 chr1 199972086 199972291 -42692062 - AluY SINE Alu -106 205 1 2591 147 2 27 chr1 199972291 199972366 -42691987 - L1PB3 LINE L1 -371 5783 5708 370 261 94 22 chr1 199972489 199972627 -42691726 + L2 LINE L2 3160 3307 -6 993 284 58 14 chr1 199973006 199973354 -42690999 + LTR16C LTR ERVL 121 483 -8 5657 106 25 6 chr1 199973536 199974791 -42689562 - L1PA13 LINE L1 -12 6151 4912 1026 181 14 5 chr1 199974793 199975014 -42689339 + L1PA13 LINE L1 4685 4907 -1239 481 317 50 0 chr1 199976619 199976780 -42687573 + MIR3 SINE MIR 33 201 -7 303 355 41 23 chr1 199977509 199977681 -42686672 + MER5B DNA MER1_type 1 175 -3 22 0 0 0 chr1 199977742 199977764 -42686589 + AT_rich Low_complexity Low_complexity 1 22 0 2442 46 3 33 chr1 199977854 199978159 -42686194 - AluY SINE Alu -15 296 1 727 334 75 55 chr1 199978252 199978848 -42685505 - L3 LINE CR1 -318 1259 652 475 240 27 87 chr1 199980002 199980185 -42684168 + MER5A DNA MER1_type 16 187 -2 959 330 135 44 chr1 199980472 199981357 -42682996 + L2 LINE L2 787 1590 -1724 591 53 0 0 chr1 199981357 199981432 -42682921 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 2131 115 0 3 chr1 199981436 199981722 -42682631 - AluSg SINE Alu -25 285 1 959 330 135 44 chr1 199981722 199982257 -42682096 + L2 LINE L2 1592 2077 -1237 4121 84 19 0 chr1 199982257 199982826 -42681527 + LTR19B LTR ERV1 1 580 0 959 330 135 44 chr1 199982826 199983174 -42681179 + L2 LINE L2 2077 2727 -587 264 339 52 0 chr1 199983462 199983654 -42680699 - ERVL LTR ERVL -2797 2688 2487 715 244 83 19 chr1 199983699 199983987 -42680366 - ERVL LTR ERVL -3094 2391 2085 369 301 35 23 chr1 199984010 199984183 -42680170 - ERVL LTR ERVL -4035 1619 1445 420 111 0 0 chr1 199984193 199984256 -42680097 + (TCCCC)n Simple_repeat Simple_repeat 1 63 0 1812 173 3 13 chr1 199984256 199984569 -42679784 - AluJb SINE Alu -2 310 1 300 302 31 0 chr1 199984593 199984689 -42679664 - ERVL LTR ERVL -4303 1461 1363 576 207 65 30 chr1 199984788 199984957 -42679396 - L1MEc LINE L1 -4559 1837 1663 1123 130 45 27 chr1 199984963 199985186 -42679167 + THE1C LTR MaLR 1 227 -148 3034 128 53 4 chr1 199985190 199985699 -42678654 + LTR18B LTR ERVL 5 538 -76 11523 190 25 13 chr1 199985736 199986356 -42677997 + HERVL18 LTR ERVL 5 616 -5431 2136 73 0 11 chr1 199986356 199986629 -42677724 - AluSq SINE Alu -40 273 4 11523 190 25 13 chr1 199986629 199988370 -42675983 + HERVL18 LTR ERVL 616 2452 -3595 3971 168 17 69 chr1 199988369 199989183 -42675170 + HERVL18 LTR ERVL 2720 3491 -2556 * 3413 138 77 5 chr1 199989374 199989947 -42674406 + LTR18B LTR ERVL 1 614 0 868 137 4 0 chr1 199989950 199990101 -42674252 + THE1C LTR MaLR 237 375 0 3493 277 56 17 chr1 199990102 199991066 -42673287 - L1MEc LINE L1 -4861 1535 493 1931 163 44 67 chr1 199991066 199991140 -42673213 - MSTB LTR MaLR 0 426 352 1782 181 3 13 chr1 199991140 199991444 -42672909 + AluJb SINE Alu 1 301 -11 1931 163 44 67 chr1 199991444 199991805 -42672548 - MSTB LTR MaLR -74 352 1 3493 277 56 17 chr1 199991805 199992296 -42672057 - L1MEc LINE L1 -5903 493 23 841 326 8 51 chr1 199992302 199992790 -42671563 - ERVL LTR ERVL -4495 1269 803 348 155 17 0 chr1 199993261 199993319 -42671034 - AluJo SINE Alu -23 279 221 1935 90 4 4 chr1 199993841 199994096 -42670257 - AluSg SINE Alu -8 302 48 989 217 15 0 chr1 199994521 199994724 -42669629 + MER3 DNA MER1_type 4 209 0 486 110 0 0 chr1 199994914 199994987 -42669366 - AluJo SINE Alu -10 302 230 266 79 0 0 chr1 199994987 199995025 -42669328 - LTR2B LTR ERV1 0 490 453 456 207 0 27 chr1 199995152 199995263 -42669090 + LTR2B LTR ERV1 383 490 0 1364 197 0 4 chr1 199995264 199995497 -42668856 - AluJo SINE Alu -80 232 1 3772 134 19 15 chr1 199996360 199997032 -42667321 + L1MB4 LINE L1 5505 6179 -1 806 292 128 30 chr1 199997054 199997103 -42667250 - L1MEc LINE L1 -5715 681 638 1370 85 144 0 chr1 199997103 199997304 -42667049 - MER30 DNA MER1_type 0 230 1 806 292 128 30 chr1 199997304 199997754 -42666599 - L1MEc LINE L1 -5758 638 133 353 333 30 10 chr1 199997747 199997945 -42666408 - L1MEc LINE L1 -5979 417 216 * 396 321 72 58 chr1 199998073 199998487 -42665866 - L1MEd LINE L1 -5189 930 511 287 85 21 0 chr1 199998831 199998878 -42665475 + (TC)n Simple_repeat Simple_repeat 1 48 0 477 0 0 0 chr1 199998878 199998931 -42665422 + (TG)n Simple_repeat Simple_repeat 2 54 0 1423 147 124 23 chr1 199998931 199999189 -42665164 - AluJb SINE Alu -28 284 1 31 0 0 0 chr1 199999225 199999256 -42665097 + AT_rich Low_complexity Low_complexity 1 31 0 3721 161 39 79 chr1 199999515 200000354 -42663999 - L1PA12 LINE L1 -3 6165 5368 2714 32 3 0 chr1 200000354 200000664 -42663689 - AluY SINE Alu 0 311 1 3721 161 39 79 chr1 200000664 200000815 -42663538 - L1PA12 LINE L1 -800 5368 5213 2508 77 3 0 chr1 200001035 200001346 -42663007 - AluSp SINE Alu -1 312 1 387 367 44 6 chr1 200002844 200003002 -42661351 - MIR3 SINE MIR -26 182 19 503 31 15 0 chr1 200003370 200003435 -42660918 + (TTC)n Simple_repeat Simple_repeat 2 67 0 378 0 0 0 chr1 200003435 200003477 -42660876 + (TTA)n Simple_repeat Simple_repeat 2 43 0 920 159 41 0 chr1 200003480 200003625 -42660728 - FRAM SINE Alu -30 146 1 231 167 0 0 chr1 200003625 200003667 -42660686 + A-rich Low_complexity Low_complexity 1 42 0 656 191 0 0 chr1 200003699 200003809 -42660544 - FLAM_C SINE Alu -33 110 1 1727 186 7 0 chr1 200004327 200004617 -42659736 - AluSx SINE Alu -20 292 1 26 50 0 0 chr1 200005615 200005655 -42658698 + AT_rich Low_complexity Low_complexity 1 40 0 625 299 106 34 chr1 200005678 200006121 -42658232 + L1MC/D LINE L1 5216 5687 -743 2496 159 24 9 chr1 200006121 200006543 -42657810 + MSTA LTR MaLR 1 428 0 2070 116 0 67 chr1 200007274 200007601 -42656752 - AluSq SINE Alu -8 305 1 21 0 0 0 chr1 200007736 200007757 -42656596 + AT_rich Low_complexity Low_complexity 1 21 0 405 373 5 36 chr1 200008006 200008199 -42656154 - MIR SINE MIR -56 206 20 2143 77 7 4 chr1 200008854 200009127 -42655226 - AluSq SINE Alu -39 274 1 2080 147 47 6 chr1 200009820 200010180 -42654173 + THE1C LTR MaLR 1 375 0 194 245 122 0 chr1 200011270 200011319 -42653034 - L2 LINE L2 -5 3308 3254 * 252 213 0 0 chr1 200011289 200011336 -42653017 - MIR SINE MIR -24 238 192 1036 191 13 26 chr1 200011342 200011572 -42652781 - MLT1A2 LTR MaLR -143 231 5 201 39 0 0 chr1 200011995 200012021 -42652332 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 321 26 0 0 chr1 200012899 200012937 -42651416 + (CA)n Simple_repeat Simple_repeat 2 39 0 825 217 25 0 chr1 200013734 200013937 -42650416 - Charlie4a DNA MER1_type -170 338 131 757 162 15 7 chr1 200013939 200014075 -42650278 - MLT1C LTR MaLR 0 467 331 2824 157 19 8 chr1 200014384 200014863 -42649490 + MER66B LTR ERV1 1 484 -2 205 353 69 12 chr1 200014889 200015062 -42649291 + L2 LINE L2 2777 2959 -355 1700 143 0 0 chr1 200015682 200015940 -42648413 - L1MC1 LINE L1 -5 6328 6071 1199 133 68 13 chr1 200016014 200016248 -42648105 - L1MC1 LINE L1 -269 6064 5818 207 100 0 0 chr1 200016259 200016289 -42648064 + (T)n Simple_repeat Simple_repeat 1 30 0 713 118 50 0 chr1 200016426 200016545 -42647808 - L1MC1 LINE L1 -506 5827 5703 3227 99 30 24 chr1 200016545 200016679 -42647674 - LTR3b LTR ERVK 0 500 368 2497 69 0 0 chr1 200016679 200016985 -42647368 + AluY SINE Alu 1 306 -5 3227 99 30 24 chr1 200016985 200017347 -42647006 - LTR3b LTR ERVK -132 368 1 2096 146 54 3 chr1 200017350 200017721 -42646632 - L1MC1 LINE L1 -625 5708 5319 497 224 4 110 chr1 200017718 200017973 -42646380 - L1M4 LINE L1 -3180 2966 2739 * 333 250 0 0 chr1 200017968 200018036 -42646317 - L1MCa LINE L1 -6338 88 21 * 2098 131 124 21 chr1 200019158 200019546 -42644807 + MSTA LTR MaLR 1 428 0 189 0 0 0 chr1 200019869 200019890 -42644463 + (A)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr1 200020402 200020423 -42643930 + AT_rich Low_complexity Low_complexity 1 21 0 252 347 102 42 chr1 200020759 200020865 -42643488 - MER5B DNA MER1_type 0 178 57 2516 140 28 32 chr1 200020865 200021328 -42643025 - MER65C LTR ERV1 0 461 1 252 347 102 42 chr1 200021328 200021388 -42642965 - MER5B DNA MER1_type -121 57 2 9697 164 34 6 chr1 200021743 200024692 -42639661 - L1MA4 LINE L1 -6 6294 3261 705 349 118 25 chr1 200025542 200026186 -42638167 + L2 LINE L2 849 1552 -1762 486 264 102 6 chr1 200026499 200026666 -42637687 - L2 LINE L2 0 3313 3131 1946 154 3 0 chr1 200026941 200027240 -42637113 + AluSx SINE Alu 1 300 -12 416 261 141 0 chr1 200027472 200027614 -42636739 - L2 LINE L2 -3 3310 3149 694 254 310 6 chr1 200027638 200027973 -42636380 - L2 LINE L2 -1379 1935 1499 228 260 90 10 chr1 200027973 200028073 -42636280 + L1MA10 LINE L1 6224 6331 -3 619 333 75 38 chr1 200028246 200028618 -42635735 + L2 LINE L2 2928 3313 0 2036 133 3 0 chr1 200028664 200028949 -42635404 - AluSx SINE Alu -6 306 21 1746 129 11 8 chr1 200029078 200029341 -42635012 - AluSx SINE Alu -13 299 36 835 87 16 0 chr1 200029346 200029472 -42634881 - L1PA15 LINE L1 -2 6163 6036 208 224 0 20 chr1 200029537 200029586 -42634767 + L3 LINE CR1 1211 1258 -319 2000 107 70 37 chr1 200030248 200030547 -42633806 + AluSg SINE Alu 2 310 0 1701 140 29 18 chr1 200031335 200031614 -42632739 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr1 200031616 200031638 -42632715 + (CA)n Simple_repeat Simple_repeat 1 22 0 1955 64 0 0 chr1 200032101 200032352 -42632001 + L1PA5 LINE L1 5903 6153 -1 1188 226 116 67 chr1 200032712 200033217 -42631136 - MER51C LTR ERV1 0 640 1 383 249 58 52 chr1 200033576 200033749 -42630604 + MER69A DNA AcHobo 1 174 -3 937 208 29 0 chr1 200034694 200034867 -42629486 + MER45A DNA AcHobo 1 178 0 342 308 47 17 chr1 200036084 200036256 -42628097 - L1M4 LINE L1 -743 5431 5255 441 309 104 8 chr1 200036464 200036723 -42627630 - L1M4 LINE L1 -3036 3110 2827 317 190 102 0 chr1 200036831 200036935 -42627418 + HsTC2 DNA Tc2 2 126 -1772 311 129 12 118 chr1 200036913 200036998 -42627355 + HsTC2 DNA Tc2 1216 1291 -607 * 255 214 0 43 chr1 200038218 200038288 -42626065 - MLT1H LTR MaLR -425 124 58 2265 170 47 34 chr1 200039119 200039713 -42624640 + pTR5 LTR ERV1 741 1342 -1096 4411 120 91 40 chr1 200039723 200040505 -42623848 + LTR12 LTR ERV1 5 826 0 424 244 39 0 chr1 200040832 200040959 -42623394 - L1M4 LINE L1 -1558 4588 4457 2725 61 0 0 chr1 200040996 200041339 -42623014 - L1PA8 LINE L1 -16 6156 5814 391 103 0 0 chr1 200041341 200041399 -42622954 + L1P LINE L1 5133 5190 -956 * 2638 220 67 26 chr1 200041394 200042383 -42621970 - L1M4 LINE L1 -1701 4445 3385 449 253 61 40 chr1 200042474 200042771 -42621582 - L1M4 LINE L1 -2763 3383 3081 * 2972 201 65 26 chr1 200042770 200043551 -42620802 - L1MC4 LINE L1 -457 7585 6774 1252 132 0 0 chr1 200043551 200043725 -42620628 + AluSg/x SINE Alu 122 295 -15 199 114 29 43 chr1 200043831 200043901 -42620452 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 228 203 76 0 chr1 200043919 200044037 -42620316 + (TA)n Simple_repeat Simple_repeat 1 127 0 216 216 0 0 chr1 200044047 200044098 -42620255 + (CATA)n Simple_repeat Simple_repeat 4 54 0 446 211 115 44 chr1 200044103 200044133 -42620220 - L1MC3 LINE L1 -1137 6648 6622 2627 144 18 105 chr1 200044133 200044697 -42619656 + MLT2B2 LTR ERVL 1 515 0 446 211 115 44 chr1 200044697 200045087 -42619266 - L1MC3 LINE L1 -1163 6622 6261 2062 107 34 21 chr1 200045087 200045378 -42618975 + AluSx SINE Alu 5 299 -13 189 0 0 0 chr1 200045378 200045399 -42618954 + (TA)n Simple_repeat Simple_repeat 1 21 0 446 211 115 44 chr1 200045399 200046103 -42618250 - L1MC3 LINE L1 -1523 6262 5481 378 216 23 11 chr1 200046599 200046687 -42617666 - LTR33 LTR ERVL -432 89 1 492 344 29 8 chr1 200046811 200047052 -42617301 - L2 LINE L2 -2518 796 551 1055 280 115 6 chr1 200047106 200047463 -42616890 + L2 LINE L2 428 823 -2491 1037 256 79 45 chr1 200047479 200047897 -42616456 - MLT1J2 LTR MaLR -1 449 18 1736 292 123 5 chr1 200047927 200048571 -42615782 + L2 LINE L2 845 1564 -1750 696 263 112 5 chr1 200048568 200048792 -42615561 - MIR SINE MIR 0 262 15 * 455 318 58 19 chr1 200048862 200049120 -42615233 - L2 LINE L2 -2793 521 254 195 315 101 34 chr1 200049798 200049887 -42614466 + L2 LINE L2 3154 3248 -24 24 0 0 0 chr1 200050678 200050702 -42613651 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr1 200051537 200051558 -42612795 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chr1 200051836 200051863 -42612490 + AT_rich Low_complexity Low_complexity 1 27 0 1725 130 38 39 chr1 200053027 200053340 -42611013 + MER44D DNA MER2_type 28 609 0 529 189 9 9 chr1 200054338 200054444 -42609909 - MIR SINE MIR -19 243 138 279 233 174 0 chr1 200055264 200055350 -42609003 - MIR3 SINE MIR -5 203 103 193 269 0 58 chr1 200056682 200056734 -42607619 + L2 LINE L2 3216 3264 -8 184 211 0 0 chr1 200056750 200056788 -42607565 - MIR SINE MIR -68 140 103 713 119 0 56 chr1 200057910 200058036 -42606317 + AluJb SINE Alu 190 308 -4 431 305 75 0 chr1 200058069 200058243 -42606110 + MIR SINE MIR 66 252 -10 389 293 86 65 chr1 200058352 200058584 -42605769 - MIR SINE MIR -6 256 20 374 229 178 0 chr1 200058681 200058799 -42605554 + MER106B DNA MER1_type 895 1033 -26 11743 206 19 3 chr1 200059541 200061597 -42602756 + L1PA15 LINE L1 2457 4576 -1589 2268 119 0 0 chr1 200061597 200061890 -42602463 + AluSx SINE Alu 4 296 -16 11743 206 19 3 chr1 200061890 200063506 -42600847 + L1PA15 LINE L1 4576 6165 0 2411 65 0 3 chr1 200063517 200063811 -42600542 + AluY SINE Alu 1 293 -18 14025 173 65 24 chr1 200063883 200066061 -42598292 + L1MA4A LINE L1 2 2090 -4915 2239 112 0 10 chr1 200066061 200066365 -42597988 + AluSx SINE Alu 1 301 -11 14025 173 65 24 chr1 200066365 200070410 -42593943 + L1MA4A LINE L1 2090 6501 -504 1855 157 16 19 chr1 200070410 200070723 -42593630 + AluJo SINE Alu 1 312 0 14025 173 65 24 chr1 200070723 200071246 -42593107 + L1MA4A LINE L1 6501 7001 -4 524 144 138 40 chr1 200071261 200071435 -42592918 + L1MC5 LINE L1 7609 7799 -162 23 0 0 0 chr1 200071808 200071831 -42592522 + AT_rich Low_complexity Low_complexity 1 23 0 189 353 108 7 chr1 200072312 200072451 -42591902 + MIR SINE MIR 110 262 0 393 326 47 21 chr1 200075064 200075254 -42589099 + MIR SINE MIR 31 225 -37 1419 245 137 39 chr1 200075606 200076426 -42587927 - L1MEc LINE L1 -3301 2914 2047 713 276 96 59 chr1 200076623 200077507 -42586846 - L1MEc LINE L1 -4611 1785 869 381 279 36 81 chr1 200078587 200078834 -42585519 + L1MC/D LINE L1 5538 5773 -2035 25 51 0 0 chr1 200078852 200078891 -42585462 + AT_rich Low_complexity Low_complexity 1 39 0 31 82 0 0 chr1 200079028 200079101 -42585252 + AT_rich Low_complexity Low_complexity 1 73 0 23 33 0 0 chr1 200079198 200079228 -42585125 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr1 200079578 200079605 -42584748 + (TG)n Simple_repeat Simple_repeat 2 28 0 252 349 124 30 chr1 200080926 200081095 -42583258 - L2 LINE L2 -3 3269 3085 2050 135 0 10 chr1 200081168 200081472 -42582881 + AluJb SINE Alu 1 301 -11 183 301 98 49 chr1 200081562 200081725 -42582628 - L2 LINE L2 -511 2803 2633 686 365 43 48 chr1 200081732 200082151 -42582202 + MER115 DNA AcHobo 1 417 -276 325 137 20 0 chr1 200082182 200082233 -42582120 + Zaphod DNA AcHobo 3979 4030 -1 201 258 30 0 chr1 200084824 200084890 -42579463 + MIR SINE MIR 183 250 -12 22 56 0 0 chr1 200085081 200085117 -42579236 + AT_rich Low_complexity Low_complexity 1 36 0 887 85 85 0 chr1 200085505 200085646 -42578707 + L1MA9 LINE L1 6153 6305 -7 2177 137 0 0 chr1 200085727 200086027 -42578326 - AluSx SINE Alu -12 300 1 22 0 0 0 chr1 200086764 200086786 -42577567 + AT_rich Low_complexity Low_complexity 1 22 0 366 348 62 13 chr1 200087091 200087313 -42577040 + MIR SINE MIR 3 231 -31 303 312 6 0 chr1 200087727 200087884 -42576469 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 * 466 254 12 0 chr1 200087776 200087945 -42576408 + (TA)n Simple_repeat Simple_repeat 2 172 0 743 152 40 0 chr1 200087947 200088098 -42576255 + L1MA4 LINE L1 6122 6278 -22 363 44 0 0 chr1 200090141 200090186 -42574167 + (TG)n Simple_repeat Simple_repeat 1 45 0 241 196 0 0 chr1 200090322 200090368 -42573985 + MER5B DNA MER1_type 5 50 -128 243 140 0 0 chr1 200090368 200090418 -42573935 + (TA)n Simple_repeat Simple_repeat 1 50 0 3202 64 5 0 chr1 200090418 200090826 -42573527 - L1PA7 LINE L1 -15 6139 5730 501 216 99 0 chr1 200090826 200090937 -42573416 + MER5B DNA MER1_type 55 176 -2 2469 79 0 0 chr1 200091958 200092263 -42572090 + AluSq SINE Alu 1 305 -8 378 330 123 11 chr1 200092476 200092673 -42571680 - MIR SINE MIR -44 218 4 282 277 45 27 chr1 200092798 200092910 -42571443 + MIR3 SINE MIR 67 180 -28 188 321 239 22 chr1 200093809 200094127 -42570226 - L2 LINE L2 -915 2399 2013 244 352 83 0 chr1 200094148 200094259 -42570094 - MIR SINE MIR -61 147 36 503 160 18 9 chr1 200094955 200095068 -42569285 - LTR8 LTR ERV1 -368 359 233 432 284 0 0 chr1 200095124 200095607 -42568746 + (TG)n Simple_repeat Simple_repeat 1 483 0 536 284 56 0 chr1 200095609 200095771 -42568582 + MIR SINE MIR 82 252 -10 195 297 116 36 chr1 200096203 200096341 -42568012 - MIR SINE MIR -66 196 48 1899 206 70 35 chr1 200096791 200097358 -42566995 + L1ME2 LINE L1 5569 6155 -9 289 319 127 6 chr1 200098014 200098180 -42566173 - MIR SINE MIR -54 208 23 2885 201 28 49 chr1 200098317 200099008 -42565345 - LTR8 LTR ERV1 0 691 16 2208 105 0 7 chr1 200099259 200099554 -42564799 + AluSg SINE Alu 1 293 -17 361 311 75 40 chr1 200099796 200100024 -42564329 + L1ME4a LINE L1 5638 5873 -248 2363 86 0 3 chr1 200100031 200100332 -42564021 + AluY SINE Alu 1 300 -11 684 209 102 36 chr1 200101471 200101667 -42562686 + MIR SINE MIR 44 252 -10 2249 263 108 58 chr1 200102093 200103065 -42561288 - HAL1 LINE L1 -215 2292 1203 2610 11 0 0 chr1 200103065 200103349 -42561004 - AluYb8 SINE Alu 0 318 35 2249 263 108 58 chr1 200103349 200104025 -42560328 - HAL1 LINE L1 -1304 1203 562 415 238 195 84 chr1 200104409 200104707 -42559646 - HAL1 LINE L1 -2144 363 33 23 0 0 0 chr1 200105080 200105103 -42559250 + AT_rich Low_complexity Low_complexity 1 23 0 277 340 152 45 chr1 200105718 200106074 -42558279 + L2 LINE L2 2878 3271 -1 24 32 0 0 chr1 200106179 200106210 -42558143 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr1 200106476 200106503 -42557850 + AT_rich Low_complexity Low_complexity 1 27 0 7172 86 8 17 chr1 200106545 200107611 -42556742 + MER11C LTR ERVK 1 1057 -14 640 350 131 22 chr1 200107697 200108501 -42555852 + L2 LINE L2 471 1361 -1953 252 382 10 0 chr1 200109258 200109360 -42554993 + L2 LINE L2 3197 3299 -14 409 268 131 55 chr1 200110912 200111095 -42553258 - MIR SINE MIR -10 252 56 1606 65 9 0 chr1 200111308 200111522 -42552831 + MER75B DNA T2_type 1 216 -27 253 356 11 0 chr1 200112427 200112514 -42551839 + MIR SINE MIR 16 103 -105 182 358 0 53 chr1 200112512 200112607 -42551746 - MIR3 SINE MIR -4 204 115 * 1718 73 24 15 chr1 200112689 200112955 -42551398 + L1PA10 LINE L1 5889 6158 -10 373 299 95 14 chr1 200113243 200113390 -42550963 - MIR SINE MIR -84 178 20 2513 58 0 0 chr1 200114743 200115051 -42549302 + AluY SINE Alu 1 308 -3 248 253 40 30 chr1 200115210 200115309 -42549044 - L1ME4a LINE L1 -58 6063 5964 333 266 62 0 chr1 200115370 200115498 -42548855 - L1ME4a LINE L1 -307 5814 5679 5372 164 12 44 chr1 200115528 200116943 -42547410 + L1MA10 LINE L1 4969 6332 -2 333 374 16 8 chr1 200117216 200117339 -42547014 - L2 LINE L2 -12 3260 3137 1367 160 0 9 chr1 200117620 200117833 -42546520 - AluSg/x SINE Alu -16 296 86 2174 109 88 15 chr1 200118165 200118504 -42545849 - THE1B LTR MaLR 0 364 1 11882 88 4 6 chr1 200118504 200120086 -42544267 - THE1B-int LTR MaLR 0 1580 1 2197 125 73 14 chr1 200120086 200120430 -42543923 - THE1B LTR MaLR 0 364 1 834 205 19 29 chr1 200120465 200120670 -42543683 - MER3 DNA MER1_type -6 203 1 523 252 16 0 chr1 200120961 200121088 -42543265 - MER94 DNA DNA 0 134 6 450 337 106 39 chr1 200121716 200121971 -42542382 + L2 LINE L2 3001 3272 0 260 271 47 47 chr1 200122248 200122333 -42542020 - L2 LINE L2 -19 3294 3210 23 33 0 0 chr1 200124748 200124778 -42539575 + AT_rich Low_complexity Low_complexity 1 30 0 922 286 80 40 chr1 200129374 200129800 -42534553 - L2 LINE L2 0 3313 2871 1065 166 19 0 chr1 200129808 200130013 -42534340 + L1MA2 LINE L1 1 209 -7356 4978 106 35 1 chr1 200130014 200130790 -42533563 - L1PA15 LINE L1 -3 6162 5361 14683 155 58 18 chr1 200130790 200132518 -42531835 + L1MA2 LINE L1 195 1853 -5870 2167 118 7 0 chr1 200132518 200132815 -42531538 - AluSp SINE Alu -14 299 1 14683 155 58 18 chr1 200132815 200132989 -42531364 + L1MA2 LINE L1 1853 2019 -5704 2000 125 13 26 chr1 200132989 200133302 -42531051 + AluY SINE Alu 1 309 -2 14683 155 58 18 chr1 200133302 200138491 -42525862 + L1MA2 LINE L1 2019 7721 -2 5743 109 8 9 chr1 200138487 200139410 -42524943 + L1MA3 LINE L1 5288 6203 -102 * 27 73 0 0 chr1 200139568 200139623 -42524730 + AT_rich Low_complexity Low_complexity 1 55 0 863 305 14 75 chr1 200139634 200140077 -42524276 - L2 LINE L2 -610 2704 2289 465 276 148 42 chr1 200140323 200140606 -42523747 + MLT1J2 LTR MaLR 122 434 -16 4440 119 15 52 chr1 200140799 200141615 -42522738 + L1PA14 LINE L1 5376 6161 0 678 170 14 27 chr1 200143140 200143287 -42521066 - MER96B DNA MER1_type? -269 148 4 3622 172 11 7 chr1 200143769 200144678 -42519675 - L1MA9 LINE L1 -366 5946 5030 1348 192 46 3 chr1 200144679 200144986 -42519367 + L1MA9 LINE L1 5951 6270 -42 27 81 0 0 chr1 200145273 200145335 -42519018 + AT_rich Low_complexity Low_complexity 1 62 0 21 82 0 0 chr1 200145484 200145533 -42518820 + AT_rich Low_complexity Low_complexity 1 49 0 417 109 0 0 chr1 200145836 200145900 -42518453 - MLT2A2 LTR ERVL -3 450 387 838 65 89 0 chr1 200145902 200146025 -42518328 - MER85 DNA T2_type -5 134 1 1896 190 27 76 chr1 200146032 200146547 -42517806 - MLT2B3 LTR ERVL -64 490 1 3111 127 12 2 chr1 200146547 200147052 -42517301 - L1MA4 LINE L1 -15 6285 5776 2469 86 3 0 chr1 200147185 200147488 -42516865 - AluSx SINE Alu -8 304 1 4522 171 26 24 chr1 200147488 200148549 -42515804 - L1MA4 LINE L1 -776 5370 4307 21 36 0 0 chr1 200148663 200148691 -42515662 + AT_rich Low_complexity Low_complexity 1 28 0 2256 114 0 0 chr1 200148903 200149200 -42515153 - AluSq SINE Alu -16 297 1 1263 135 121 7 chr1 200149283 200149564 -42514789 + L1MA4 LINE L1 5988 6300 0 21168 145 25 4 chr1 200149574 200153277 -42511076 + L1MA3 LINE L1 12 3791 -3774 243 130 74 0 chr1 200153270 200153324 -42511029 + L1MA3 LINE L1 4381 4438 -3127 * 2376 109 23 0 chr1 200153331 200153679 -42510674 + THE1C LTR MaLR 20 375 0 9783 105 47 51 chr1 200153679 200155266 -42509087 + THE1C-int LTR MaLR 1 1580 0 2838 96 3 0 chr1 200155266 200155640 -42508713 + THE1C LTR MaLR 1 375 0 9249 150 20 3 chr1 200155640 200157708 -42506645 + L1MA3 LINE L1 4985 7088 -636 3350 77 10 14 chr1 200157714 200158205 -42506148 + L1MA3 LINE L1 7236 7724 0 821 336 111 34 chr1 200159438 200160372 -42503981 + L2 LINE L2 719 1775 -1539 23 0 0 0 chr1 200160386 200160409 -42503944 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr1 200160433 200160468 -42503885 + AT_rich Low_complexity Low_complexity 1 35 0 330 282 40 0 chr1 200160626 200160750 -42503603 - L1MC4a LINE L1 -1878 5930 5802 233 324 0 0 chr1 200160771 200160839 -42503514 + L2 LINE L2 3244 3311 -2 274 244 23 0 chr1 200160839 200160925 -42503428 - L1MC4a LINE L1 -2010 5798 5711 333 297 31 0 chr1 200161157 200161285 -42503068 + MLT1I LTR MaLR 1 132 -277 451 202 23 78 chr1 200161368 200161414 -42502939 + MLT1I LTR MaLR 288 335 -74 2177 96 0 0 chr1 200161414 200161775 -42502578 - AluY SINE Alu 0 361 1 451 202 23 78 chr1 200161775 200161856 -42502497 + MLT1I LTR MaLR 335 409 0 2419 61 0 61 chr1 200162298 200162626 -42501727 + AluY SINE Alu 1 308 -3 1026 209 48 39 chr1 200163030 200163470 -42500883 + L1M4 LINE L1 2910 3353 -2793 358 299 21 46 chr1 200163564 200163758 -42500595 + L1ME LINE L1 5636 5824 -347 198 0 0 0 chr1 200164556 200164578 -42499775 + (AAATG)n Simple_repeat Simple_repeat 4 25 0 573 311 118 13 chr1 200165470 200165698 -42498655 - MIR SINE MIR -2 260 9 237 322 22 22 chr1 200165708 200165798 -42498555 + MIR SINE MIR 109 198 -64 213 138 0 62 chr1 200166269 200166334 -42498019 + (GGGAGA)n Simple_repeat Simple_repeat 3 63 0 24 0 0 0 chr1 200166565 200166589 -42497764 + AT_rich Low_complexity Low_complexity 1 24 0 2006 137 7 13 chr1 200166592 200166898 -42497455 + AluSx SINE Alu 1 304 -8 810 212 111 23 chr1 200166906 200167123 -42497230 - MIR SINE MIR -19 243 8 2272 51 4 4 chr1 200167339 200167636 -42496717 + AluY SINE Alu 9 305 0 209 234 13 13 chr1 200168099 200168176 -42496177 + (TTAA)n Simple_repeat Simple_repeat 2 78 0 26 0 0 0 chr1 200169482 200169508 -42494845 + AT_rich Low_complexity Low_complexity 1 26 0 197 224 30 75 chr1 200169819 200169886 -42494467 - MIR SINE MIR -34 228 165 9271 135 16 22 chr1 200170289 200173137 -42491216 - L1MA2 LINE L1 -5 6299 3471 1670 203 11 56 chr1 200173311 200173760 -42490593 - L1MD2 LINE L1 -149 6210 5782 2212 89 0 33 chr1 200173776 200174078 -42490275 - AluSg SINE Alu -14 296 5 555 186 49 176 chr1 200174088 200174475 -42489878 - L1MD2 LINE L1 -988 5158 4821 1088 283 19 30 chr1 200174492 200174863 -42489490 - L2 LINE L2 -6 3307 2941 2616 256 49 49 chr1 200174902 200175763 -42488590 + L1ME LINE L1 2 868 -5212 2265 85 0 0 chr1 200175763 200176046 -42488307 + AluY SINE Alu 21 303 -8 2616 256 49 49 chr1 200176046 200176548 -42487805 + L1ME LINE L1 868 1368 -4712 429 308 45 0 chr1 200176631 200176764 -42487589 - L2 LINE L2 -648 2666 2528 184 306 24 47 chr1 200176875 200176960 -42487393 - L2 LINE L2 -2324 990 908 319 91 0 0 chr1 200177790 200177834 -42486519 - MSTA LTR MaLR 0 428 385 2715 36 0 0 chr1 200177835 200178141 -42486212 + AluYa5 SINE Alu 1 306 -5 1345 101 0 0 chr1 200178141 200178320 -42486033 + AluY SINE Alu 133 311 0 591 157 174 0 chr1 200178323 200178444 -42485909 - MSTA LTR MaLR -35 393 252 2363 106 0 0 chr1 200178884 200179187 -42485166 + AluSx SINE Alu 1 303 -9 2442 243 73 11 chr1 200179212 200180145 -42484208 - L1ME3A LINE L1 -2 6168 5179 742 151 12 54 chr1 200180147 200180313 -42484040 - MLT1B LTR MaLR -2 388 230 405 368 0 0 chr1 200182093 200182229 -42482124 - MIR SINE MIR -109 153 18 572 330 8 6 chr1 200182607 200182958 -42481395 + L1ME3A LINE L1 4827 5178 -968 * 1529 222 44 100 chr1 200182955 200183048 -42481305 + L1ME3A LINE L1 5516 5613 -557 2011 141 3 29 chr1 200183048 200183361 -42480992 + AluJo SINE Alu 1 305 -7 1529 222 44 100 chr1 200183361 200183672 -42480681 + L1ME3A LINE L1 5613 5912 -258 315 87 0 0 chr1 200183672 200183718 -42480635 - MADE1 DNA Mariner -34 46 1 1529 222 44 100 chr1 200183718 200183959 -42480394 + L1ME3A LINE L1 5912 6165 -5 1451 266 66 58 chr1 200184633 200185423 -42478930 + L1ME3A LINE L1 5268 6063 -107 1844 133 23 0 chr1 200185813 200186077 -42478276 + AluSx SINE Alu 33 302 -10 225 94 0 0 chr1 200186077 200186109 -42478244 + (GA)n Simple_repeat Simple_repeat 1 32 0 275 340 20 0 chr1 200186594 200186694 -42477659 - MIR SINE MIR -114 148 47 26 0 0 0 chr1 200187839 200187865 -42476488 + AT_rich Low_complexity Low_complexity 1 26 0 409 246 141 40 chr1 200188940 200189212 -42475141 - HERV3 LTR ERV1 -7874 861 314 1540 199 28 36 chr1 200189395 200189882 -42474471 - HERV3 LTR ERV1 -8033 393 19 3480 127 45 14 chr1 200189901 200190476 -42473877 - LTR61 LTR ERV1 -2 593 1 22 56 0 0 chr1 200190670 200190706 -42473647 + AT_rich Low_complexity Low_complexity 1 36 0 1984 153 3 0 chr1 200192289 200192589 -42471764 + AluSq SINE Alu 1 301 -12 417 302 73 5 chr1 200192657 200192849 -42471504 - MIR SINE MIR -51 211 7 412 285 48 59 chr1 200192950 200193308 -42471045 + LTR16A1 LTR ERVL 56 409 -48 323 323 20 30 chr1 200193600 200193801 -42470552 + HERV16 LTR ERVL 330 528 -4468 354 131 0 60 chr1 200193803 200193887 -42470466 - L1MA7 LINE L1 -179 6112 6034 1392 320 57 17 chr1 200193994 200194693 -42469660 + HERV16 LTR ERVL 731 1457 -3539 659 219 0 0 chr1 200194713 200194836 -42469517 - MER96 DNA MER1_type? -4 171 49 1190 225 65 0 chr1 200195504 200195855 -42468498 + L1M4 LINE L1 4011 4384 -1762 1048 225 23 10 chr1 200195853 200196239 -42468114 + L1MD2 LINE L1 5855 6296 -63 * 351 230 46 11 chr1 200196239 200196326 -42468027 + L1MC4 LINE L1 6614 6703 -1339 392 77 77 0 chr1 200196329 200196420 -42467933 + (TA)n Simple_repeat Simple_repeat 1 98 0 283 148 20 0 chr1 200196426 200196501 -42467852 + L1MD1 LINE L1 6169 7993 -2 1829 221 38 13 chr1 200196538 200197089 -42467264 + L1M4 LINE L1 4455 5019 -1127 41772 43 1 4 chr1 200197281 200203454 -42460899 - L1PA4 LINE L1 -2 6153 1 332 272 37 74 chr1 200204497 200204659 -42459694 + HAL1b LINE L1 742 897 -451 301 235 72 82 chr1 200204751 200205041 -42459312 - MLT1J1 LTR MaLR 0 504 228 2451 65 3 7 chr1 200205044 200205353 -42459000 + AluSg1 SINE Alu 1 308 -1 301 216 49 39 chr1 200205653 200205755 -42458598 + HAL1 LINE L1 927 1029 -1478 465 298 58 49 chr1 200205780 200206005 -42458348 + HAL1 LINE L1 1105 1331 -1176 906 261 60 13 chr1 200206038 200206337 -42458016 + HAL1 LINE L1 1479 1791 -716 287 357 36 20 chr1 200206375 200206571 -42457782 + LTR16C LTR ERVL 1 199 -292 352 304 77 16 chr1 200206981 200207175 -42457178 + LTR16C LTR ERVL 256 461 -30 822 166 188 22 chr1 200207654 200207877 -42456476 + MER83B LTR ERV1 1 260 -118 327 266 0 13 chr1 200207912 200207991 -42456362 - MER63 DNA MER1_type 0 1062 985 264 224 0 0 chr1 200208015 200208082 -42456271 - L1ME LINE L1 -369 5797 5731 * 34789 89 15 10 chr1 200208075 200214185 -42450168 - L1PA6 LINE L1 0 6154 46 600 182 0 94 chr1 200214185 200214355 -42449998 + MER83C LTR ERV1 220 373 0 24 0 0 0 chr1 200215098 200215122 -42449231 + AT_rich Low_complexity Low_complexity 1 24 0 4582 120 12 0 chr1 200215829 200216519 -42447834 + L1PA15 LINE L1 5466 6163 -2 227 181 25 75 chr1 200217201 200217361 -42446992 + (TA)n Simple_repeat Simple_repeat 1 152 0 426 333 38 29 chr1 200217365 200217575 -42446778 - MIR SINE MIR -50 212 1 1014 22 22 15 chr1 200218646 200218780 -42445573 + L1PB1 LINE L1 6016 6150 -1 399 320 90 10 chr1 200221285 200221485 -42442868 - MIR SINE MIR -44 218 3 188 317 12 24 chr1 200221673 200221755 -42442598 + MIR3 SINE MIR 114 194 -14 2095 134 47 33 chr1 200221909 200222268 -42442085 - THE1B LTR MaLR 0 364 1 561 290 29 14 chr1 200222362 200222569 -42441784 - LTR16C LTR ERVL -73 418 209 634 310 29 21 chr1 200222608 200222889 -42441464 + ERVL LTR ERVL 4360 4642 -1122 1979 153 0 0 chr1 200222962 200223358 -42440995 - AluSx SINE Alu 0 396 1 777 234 136 23 chr1 200223467 200223711 -42440642 + MLT1G1 LTR MaLR 311 588 -7 307 209 14 70 chr1 200223724 200223844 -42440509 + L1ME3A LINE L1 3861 3981 -2165 315 192 0 0 chr1 200223844 200223896 -42440457 - 5S rRNA rRNA -68 53 2 325 340 121 8 chr1 200223901 200224027 -42440326 + L1ME3A LINE L1 4034 4144 -2002 516 111 0 0 chr1 200224027 200224108 -42440245 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 325 340 121 8 chr1 200224108 200224246 -42440107 + L1ME3A LINE L1 4144 4328 -1818 2047 264 67 20 chr1 200224308 200225817 -42438536 + L1ME3A LINE L1 4413 5998 -172 2286 39 18 0 chr1 200226571 200226854 -42437499 - L1PA5 LINE L1 -1 6153 5866 791 11 0 0 chr1 200226854 200226948 -42437405 + L1P1 LINE L1 5588 5681 -474 23 0 0 0 chr1 200227767 200227790 -42436563 + AT_rich Low_complexity Low_complexity 1 23 0 625 275 74 5 chr1 200227791 200227980 -42436373 - MIR SINE MIR 0 262 61 2272 118 3 0 chr1 200229591 200229897 -42434456 - AluSx SINE Alu -5 307 1 536 270 144 14 chr1 200230409 200230687 -42433666 + LTR16C LTR ERVL 173 486 -5 521 82 10 72 chr1 200231526 200231623 -42432730 + L1MA3 LINE L1 6210 6300 -5 1305 132 23 47 chr1 200231694 200231986 -42432367 + L1MB1 LINE L1 5912 6197 0 323 307 61 0 chr1 200433445 200433559 -42230794 + L2 LINE L2 3193 3313 0 205 216 0 0 chr1 200436336 200436373 -42227980 + T-rich Low_complexity Low_complexity 1 37 0 1008 279 12 0 chr1 200438091 200438338 -42226015 + MIR SINE MIR 8 257 -5 731 163 0 22 chr1 200442902 200443037 -42221316 - FLAM_C SINE Alu 0 133 2 690 161 8 0 chr1 200443942 200444060 -42220293 + MER94 DNA DNA 14 132 -2 1001 180 29 103 chr1 200444607 200444957 -42219396 + MER33 DNA MER1_type 1 324 0 500 288 16 49 chr1 200444967 200445151 -42219202 - MIR SINE MIR -78 184 7 521 231 192 0 chr1 200446269 200446451 -42217902 + MIR SINE MIR 44 260 -2 180 0 0 0 chr1 200446467 200446487 -42217866 + (CAT)n Simple_repeat Simple_repeat 1 20 0 184 240 20 0 chr1 200446549 200446599 -42217754 + L2 LINE L2 3263 3313 0 352 276 181 0 chr1 200446980 200447107 -42217246 - MIR SINE MIR -110 152 3 363 302 104 33 chr1 200447582 200447794 -42216559 - MIR SINE MIR -14 248 22 181 0 0 65 chr1 200447902 200447933 -42216420 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 356 300 36 29 chr1 200447941 200448081 -42216272 - MER5B DNA MER1_type -37 141 1 435 233 62 27 chr1 200449667 200449813 -42214540 + MIR3 SINE MIR 6 156 -52 896 217 18 35 chr1 200450051 200450277 -42214076 + MIR SINE MIR 38 259 -3 232 203 13 25 chr1 200451777 200451856 -42212497 + L1ME4a LINE L1 6006 6083 -38 243 191 96 75 chr1 200454731 200454825 -42209528 - L2 LINE L2 0 3272 3177 312 102 0 0 chr1 200454961 200455010 -42209343 + (TG)n Simple_repeat Simple_repeat 1 49 0 289 231 64 70 chr1 200455037 200455193 -42209160 - L2 LINE L2 -219 3053 2899 237 224 412 0 chr1 200456030 200456115 -42208238 - L2 LINE L2 -2 3270 3151 392 254 101 22 chr1 200457499 200457637 -42206716 + MIR3 SINE MIR 45 193 -15 222 118 0 0 chr1 200459129 200459163 -42205190 + (A)n Simple_repeat Simple_repeat 1 34 0 617 239 14 86 chr1 200459176 200459524 -42204829 + L1MC5 LINE L1 7609 7931 -30 362 307 44 0 chr1 200460114 200460228 -42204125 - L2 LINE L2 -6 3266 3148 304 315 0 0 chr1 200460276 200460365 -42203988 + L2 LINE L2 3219 3307 -6 973 174 60 32 chr1 200461513 200461731 -42202622 - MER58A DNA MER1_type 0 224 1 215 227 307 11 chr1 200462008 200462096 -42202257 - MIR3 SINE MIR -80 128 15 513 47 0 0 chr1 200462200 200462264 -42202089 + (TG)n Simple_repeat Simple_repeat 2 65 0 203 274 97 0 chr1 200462931 200462993 -42201360 + L2 LINE L2 3246 3313 0 302 280 93 75 chr1 200467141 200467409 -42196944 + L2 LINE L2 2384 2656 -658 910 210 46 10 chr1 200467493 200467688 -42196665 + MLT1A2 LTR MaLR 173 374 0 1665 190 14 7 chr1 200467930 200468220 -42196133 - AluJb SINE Alu -20 292 1 293 261 14 0 chr1 200468382 200468451 -42195902 + L2 LINE L2 3243 3312 -1 196 274 108 29 chr1 200468580 200468682 -42195671 + MIR SINE MIR 96 205 -57 207 0 0 0 chr1 200468706 200468729 -42195624 + (TC)n Simple_repeat Simple_repeat 2 24 0 438 230 24 85 chr1 200468758 200468923 -42195430 - MIR SINE MIR -62 200 46 183 233 0 0 chr1 200469330 200469373 -42194980 - L2 LINE L2 0 3313 3271 * 429 203 98 16 chr1 200469371 200469494 -42194859 + MIR SINE MIR 64 196 -66 825 213 42 61 chr1 200470933 200470966 -42193387 + MIR SINE MIR 1 33 -229 2516 62 0 3 chr1 200470966 200471270 -42193083 + AluY SINE Alu 1 303 -8 825 213 42 61 chr1 200471270 200471499 -42192854 + MIR SINE MIR 33 258 -4 202 265 0 0 chr1 200471530 200471579 -42192774 + L2 LINE L2 3224 3272 0 191 330 0 34 chr1 200471661 200471749 -42192604 - MIR SINE MIR 0 262 178 1558 152 72 51 chr1 200471833 200472137 -42192216 - AluJo SINE Alu 0 310 1 484 289 39 44 chr1 200472759 200472963 -42191390 - MIR SINE MIR -31 231 29 2692 48 0 0 chr1 200473685 200473995 -42190358 - AluY SINE Alu -1 310 1 1797 142 3 50 chr1 200474000 200474302 -42190051 - AluJo SINE Alu -18 294 7 246 333 19 9 chr1 200474459 200474567 -42189786 + L2 LINE L2 1817 1925 -1389 1282 218 87 121 chr1 200474693 200474759 -42189594 - MLT1F LTR MaLR 0 542 475 3085 44 0 0 chr1 200474759 200475142 -42189211 + L1PA3 LINE L1 5773 6155 0 1282 218 87 121 chr1 200475142 200475164 -42189189 - MLT1F LTR MaLR -67 475 454 1817 168 10 7 chr1 200475164 200475467 -42188886 - AluJo SINE Alu -8 304 1 1282 218 87 121 chr1 200475467 200475938 -42188415 - MLT1F LTR MaLR -88 454 1 382 338 138 17 chr1 200475941 200476296 -42188057 + L2 LINE L2 2091 2488 -826 230 178 40 125 chr1 200476355 200476507 -42187846 - L1MC4 LINE L1 0 8042 7904 304 172 16 0 chr1 200476509 200476573 -42187780 + Charlie1 DNA MER1_type 79 143 -2618 536 239 0 0 chr1 200476596 200476713 -42187640 - L1MC4 LINE L1 -155 7887 7771 2219 108 3 0 chr1 200476752 200477076 -42187277 - AluSx SINE Alu 0 325 1 506 297 86 0 chr1 200477093 200477315 -42187038 + L2 LINE L2 2575 2815 -499 995 181 19 4 chr1 200477337 200477596 -42186757 - Charlie5 DNA MER1_type 0 2616 2354 696 238 5 32 chr1 200477597 200477786 -42186567 - Charlie5 DNA MER1_type -2413 199 16 2089 193 26 36 chr1 200477808 200478023 -42186330 + Charlie1b DNA MER1_type 3 219 -2542 2643 58 0 3 chr1 200478023 200478331 -42186022 + AluY SINE Alu 1 307 -4 2089 193 26 36 chr1 200478331 200478619 -42185734 + Charlie1b DNA MER1_type 219 501 -22 834 218 0 6 chr1 200478697 200478867 -42185486 + L1MDa LINE L1 19 187 -6353 1492 163 180 51 chr1 200478867 200479316 -42185037 + L1MDa LINE L1 805 1311 -5229 506 308 104 36 chr1 200479386 200479694 -42184659 + L2 LINE L2 2944 3272 0 309 292 90 35 chr1 200480236 200480380 -42183973 + MIR SINE MIR 110 261 -1 671 278 170 47 chr1 200480421 200481090 -42183263 + L2 LINE L2 2505 3287 -26 455 264 16 24 chr1 200481660 200481785 -42182568 + MIR3 SINE MIR 82 205 -3 228 232 0 18 chr1 200484658 200484714 -42179639 + G-rich Low_complexity Low_complexity 2 56 0 1544 171 89 4 chr1 200488053 200488333 -42176020 + AluJb SINE Alu 3 306 -6 496 244 24 0 chr1 200488342 200488469 -42175884 - MIR SINE MIR -24 238 109 206 264 58 23 chr1 200488736 200488823 -42175530 + L2 LINE L2 2978 3067 -205 1990 131 0 27 chr1 200488951 200489249 -42175104 + AluSx SINE Alu 5 294 -18 4401 155 65 7 chr1 200490403 200491214 -42173139 + L1MB3 LINE L1 5324 6181 -2 291 364 8 4 chr1 200492996 200493235 -42171118 + L1M4 LINE L1 4123 4362 -1784 27 29 0 0 chr1 200493715 200493749 -42170604 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr1 200493912 200493944 -42170409 + AT_rich Low_complexity Low_complexity 1 32 0 201 39 0 0 chr1 200494232 200494258 -42170095 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1911 124 36 4 chr1 200494683 200494988 -42169365 - AluSx SINE Alu 0 314 1 881 151 0 53 chr1 200497640 200497792 -42166561 - FRAM SINE Alu -11 165 22 1814 280 37 26 chr1 200497915 200498455 -42165898 + MER115 DNA AcHobo 148 693 0 450 256 135 17 chr1 200501057 200501287 -42163066 + MIR SINE MIR 2 258 -4 270 234 60 90 chr1 200501576 200501694 -42162659 + L3 LINE CR1 1094 1207 -370 872 217 23 42 chr1 200501694 200501782 -42162571 + MER58C DNA MER1_type 3 91 -2329 2212 114 7 0 chr1 200501782 200502080 -42162273 - AluSx SINE Alu -12 300 1 872 217 23 42 chr1 200502080 200502208 -42162145 + MER58C DNA MER1_type 91 215 0 270 234 60 90 chr1 200502208 200502256 -42162097 + L3 LINE CR1 1207 1255 -322 319 156 0 47 chr1 200502258 200502275 -42162078 - MER46A DNA MER2_type -79 157 144 2327 133 14 3 chr1 200502275 200502622 -42161731 + MER46B DNA MER2_type 3 228 -8 392 331 39 22 chr1 200502799 200502977 -42161376 + L3 LINE CR1 1254 1434 -143 2103 124 3 0 chr1 200503207 200503524 -42160829 + AluSp SINE Alu 1 318 0 2271 85 0 3 chr1 200506037 200506355 -42157998 - AluSc SINE Alu 0 309 1 21 0 0 0 chr1 200507622 200507643 -42156710 + GC_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr1 200508392 200508422 -42155931 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 226 216 68 40 chr1 200509685 200509759 -42154594 + MER5A DNA MER1_type 114 189 0 439 227 54 2 chr1 200510689 200510803 -42153550 - LTR50 LTR ERVL -364 159 50 989 168 54 0 chr1 200511427 200511594 -42152759 + MER46A DNA MER2_type 2 177 -59 252 206 29 29 chr1 200511782 200511850 -42152503 - LTR50 LTR ERVL -725 70 3 2007 269 71 67 chr1 200511868 200512806 -42151547 - L1M4 LINE L1 -1201 4945 3995 718 206 0 0 chr1 200512806 200512932 -42151421 - FLAM_C SINE Alu -7 126 1 2007 269 71 67 chr1 200512932 200513659 -42150694 - L1M4 LINE L1 -2151 3995 3273 2330 105 0 3 chr1 200514138 200514444 -42149909 + AluSx SINE Alu 1 305 -7 227 297 0 0 chr1 200516367 200516431 -42147922 + T-rich Low_complexity Low_complexity 1 64 0 259 330 21 0 chr1 200517721 200517818 -42146535 + L2 LINE L2 2593 2691 -623 1626 159 78 29 chr1 200517825 200518134 -42146219 - MER2 DNA MER2_type 0 345 22 342 307 136 26 chr1 200518137 200518664 -42145689 + L2 LINE L2 2699 3313 0 404 326 15 0 chr1 200520009 200520141 -42144212 + MER94 DNA DNA 1 134 0 267 363 29 10 chr1 200520640 200520742 -42143611 - L2 LINE L2 -32 3240 3137 186 344 10 21 chr1 200520882 200520978 -42143375 + MIR SINE MIR 11 105 -157 250 266 114 0 chr1 200520996 200521075 -42143278 + MIR SINE MIR 84 171 -91 605 217 159 6 chr1 200521075 200521232 -42143121 - MER5A DNA MER1_type 0 189 9 2052 234 86 22 chr1 200521733 200522279 -42142074 + MLT1G LTR MaLR 10 590 0 24 32 0 0 chr1 200522284 200522315 -42142038 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr1 200522341 200522383 -42141970 + AT_rich Low_complexity Low_complexity 1 42 0 1106 143 6 11 chr1 200522383 200522565 -42141788 + AluSq SINE Alu 130 310 -3 32 67 0 0 chr1 200522586 200522646 -42141707 + AT_rich Low_complexity Low_complexity 1 60 0 547 138 18 3 chr1 200522692 200522913 -42141440 + AluJo SINE Alu 1 293 -19 390 296 93 12 chr1 200522987 200523149 -42141204 + MIR SINE MIR 10 184 -78 654 171 16 47 chr1 200523471 200523600 -42140753 + FLAM_C SINE Alu 9 133 -10 723 240 53 9 chr1 200523607 200523832 -42140521 + L1M4 LINE L1 4640 4874 -1272 288 345 93 14 chr1 200523891 200524256 -42140097 - L2 LINE L2 -1285 2029 1636 625 315 80 21 chr1 200524738 200525114 -42139239 - L1ME3A LINE L1 -215 6020 5622 637 216 6 50 chr1 200525116 200525297 -42139056 - L1MEd LINE L1 -4910 1209 1037 1903 142 16 10 chr1 200525302 200525605 -42138748 - AluSx SINE Alu -7 305 1 250 196 0 0 chr1 200525627 200525673 -42138680 + U2 snRNA snRNA 1 46 -142 1256 284 125 40 chr1 200525792 200526161 -42138192 - L1ME3A LINE L1 -854 5361 5025 15979 121 15 6 chr1 200526161 200528558 -42135795 - Tigger1 DNA MER2_type 0 2418 1 1256 284 125 40 chr1 200528558 200528962 -42135391 - L1ME3A LINE L1 -1190 5025 4657 2138 117 3 0 chr1 200528962 200529252 -42135101 - AluSx SINE Alu -21 291 1 1256 284 125 40 chr1 200529252 200529655 -42134698 - L1ME3A LINE L1 -1558 4657 4084 874 237 0 26 chr1 200529659 200529853 -42134500 - MER5A DNA MER1_type 0 189 1 780 255 24 28 chr1 200529874 200530086 -42134267 + MLT1J LTR MaLR 8 218 -293 897 249 120 41 chr1 200530087 200530638 -42133715 - MLT1G1 LTR MaLR 0 590 1 433 261 217 16 chr1 200530665 200530849 -42133504 + MLT1J LTR MaLR 291 511 0 2190 134 0 0 chr1 200530967 200531265 -42133088 - AluSx SINE Alu -14 298 1 790 272 143 47 chr1 200531265 200531751 -42132602 - L1MEc LINE L1 -2389 3826 3388 1936 212 24 33 chr1 200531751 200532204 -42132149 + LTR2 LTR ERV1 1 449 0 790 272 143 47 chr1 200532204 200533298 -42131055 - L1MEc LINE L1 -2827 3388 2111 314 191 11 67 chr1 200533474 200533563 -42130790 - L2 LINE L2 -1 3312 3229 215 304 0 14 chr1 200533750 200533819 -42130534 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 203 189 0 0 chr1 200533888 200533925 -42130428 + A-rich Low_complexity Low_complexity 1 37 0 445 249 37 32 chr1 200533957 200534146 -42130207 - HAL1 LINE L1 -120 2387 2198 753 208 160 91 chr1 200534431 200534479 -42129874 - MER57A LTR ERV1 0 403 360 2127 97 3 45 chr1 200534479 200534788 -42129565 - AluSg SINE Alu -14 296 1 753 208 160 91 chr1 200534788 200535114 -42129239 - MER57A LTR ERV1 -43 360 3 2157 253 109 62 chr1 200535131 200536098 -42128255 - HAL1 LINE L1 -1262 1245 214 207 0 0 0 chr1 200536098 200536121 -42128232 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2157 253 109 62 chr1 200536121 200536310 -42128043 - HAL1 LINE L1 -2293 214 35 344 164 0 0 chr1 200536577 200536632 -42127721 - L1MEc LINE L1 -5972 233 179 21 36 0 0 chr1 200538294 200538322 -42126031 + AT_rich Low_complexity Low_complexity 1 28 0 2596 65 0 0 chr1 200539213 200539523 -42124830 + AluSx SINE Alu 3 312 0 1925 99 37 7 chr1 200539633 200539905 -42124448 - AluSx SINE Alu -28 284 5 10594 176 53 28 chr1 200540008 200540101 -42124252 - Charlie5 DNA MER1_type -13 2611 2522 1869 132 3 64 chr1 200540101 200540428 -42123925 + AluSx SINE Alu 1 307 -5 10594 176 53 28 chr1 200540428 200542695 -42121658 - Charlie5 DNA MER1_type -102 2522 180 2340 90 0 0 chr1 200542695 200542983 -42121370 - AluY SINE Alu -14 297 10 10594 176 53 28 chr1 200542983 200543168 -42121185 - Charlie5 DNA MER1_type -2444 180 1 541 256 47 31 chr1 200544301 200544492 -42119861 - MIR SINE MIR -49 213 20 1942 143 0 0 chr1 200544576 200544862 -42119491 + AluJb SINE Alu 14 299 -13 195 191 0 0 chr1 200545861 200545903 -42118450 - MIR SINE MIR -111 151 110 524 266 110 71 chr1 200547161 200547469 -42116884 - L2 LINE L2 -1 3271 2952 666 264 111 0 chr1 200547893 200548101 -42116252 - MIR SINE MIR -19 243 13 3188 173 30 2 chr1 200548226 200548798 -42115555 - L1MB4 LINE L1 -17 6163 5576 507 306 82 0 chr1 200548899 200549095 -42115258 - MIR SINE MIR -5 257 46 406 293 63 29 chr1 200550127 200550332 -42114021 - MIR SINE MIR 0 262 51 21 57 0 0 chr1 200550332 200550367 -42113986 + AT_rich Low_complexity Low_complexity 1 35 0 2178 207 131 106 chr1 200550553 200551185 -42113168 - MLT1E2 LTR MaLR 0 626 7 351 294 28 0 chr1 200552017 200552126 -42112227 - MIR SINE MIR -93 169 58 1033 286 58 17 chr1 200553254 200553667 -42110686 - MLT1L LTR MaLR -4 611 182 279 159 72 43 chr1 200554169 200554238 -42110115 - MER5A DNA MER1_type 0 189 119 628 180 22 36 chr1 200554909 200555048 -42109305 - MER5A DNA MER1_type -50 139 3 307 302 105 5 chr1 200556687 200556887 -42107466 - MIR SINE MIR -4 258 20 1745 162 16 57 chr1 200557889 200558328 -42106025 - MLT1D LTR MaLR 0 505 24 423 190 80 10 chr1 200558742 200558842 -42105511 - L1MC2 LINE L1 0 6344 6238 434 246 34 8 chr1 200561741 200561859 -42102494 - MIR SINE MIR -71 137 17 335 275 123 58 chr1 200561843 200562014 -42102339 - L2 LINE L2 -1 3312 3131 * 190 268 18 18 chr1 200562101 200562157 -42102196 - L2 LINE L2 -6 3266 3211 263 225 36 0 chr1 200562839 200562919 -42101434 + MIR3 SINE MIR 105 189 -19 222 37 0 0 chr1 200563341 200563368 -42100985 + (TG)n Simple_repeat Simple_repeat 1 27 0 425 168 131 28 chr1 200563753 200563860 -42100493 + MLT1C LTR MaLR 1 118 -349 22 0 0 0 chr1 200563860 200563882 -42100471 + AT_rich Low_complexity Low_complexity 1 22 0 430 161 0 46 chr1 200563909 200563996 -42100357 + MLT1C LTR MaLR 118 200 -267 228 35 0 0 chr1 200564065 200564094 -42100259 + (TC)n Simple_repeat Simple_repeat 2 30 0 733 273 87 15 chr1 200564240 200564504 -42099849 + MLT1C LTR MaLR 185 467 0 390 269 28 9 chr1 200564599 200564707 -42099646 + MLT1K LTR MaLR 107 216 -372 28 79 0 0 chr1 200564714 200564777 -42099576 + AT_rich Low_complexity Low_complexity 1 63 0 1086 249 24 15 chr1 200564778 200565111 -42099242 - L1M4 LINE L1 -1772 4374 4039 729 196 0 0 chr1 200565225 200565358 -42098995 + FLAM_A SINE Alu 1 133 0 192 40 0 0 chr1 200565606 200565631 -42098722 + (TC)n Simple_repeat Simple_repeat 2 26 0 252 152 15 45 chr1 200566158 200566224 -42098129 - MLT1K LTR MaLR -65 523 460 846 226 34 34 chr1 200566226 200566460 -42097893 - MLT1K LTR MaLR -248 340 107 1909 96 0 0 chr1 200566868 200567108 -42097245 + AluSc SINE Alu 1 240 -69 754 265 31 0 chr1 200567734 200567930 -42096423 - MIR SINE MIR -14 248 47 201 154 0 0 chr1 200568592 200568631 -42095722 + (TCTG)n Simple_repeat Simple_repeat 3 41 0 21 0 0 0 chr1 200570406 200570427 -42093926 + AT_rich Low_complexity Low_complexity 1 21 0 2206 266 64 20 chr1 200571196 200572005 -42092348 + L1MEc LINE L1 1338 2182 -4033 1895 163 10 19 chr1 200572005 200572318 -42092035 + AluJo SINE Alu 1 310 -2 2206 266 64 20 chr1 200572318 200572718 -42091635 + L1MEc LINE L1 2182 2563 -3652 876 253 66 37 chr1 200572715 200573063 -42091290 + L1ME1 LINE L1 5805 6162 -4 * 1773 267 82 85 chr1 200573086 200573398 -42090955 - L1MC4a LINE L1 -838 5702 5390 1225 35 0 0 chr1 200573398 200573542 -42090811 + L1PA5 LINE L1 6005 6148 -6 1773 267 82 85 chr1 200573542 200574122 -42090231 - L1MC4a LINE L1 -1150 5390 4810 2159 156 3 3 chr1 200574122 200574482 -42089871 + MER46B DNA MER2_type 2 236 0 1773 267 82 85 chr1 200574482 200575096 -42089257 - L1MC4a LINE L1 -1730 4810 5432 2330 141 29 63 chr1 200575096 200575543 -42088810 - MSTB1 LTR MaLR 0 432 1 1773 267 82 85 chr1 200575543 200575825 -42088528 - L1MC4a LINE L1 -1107 5433 5152 326 266 23 31 chr1 200575836 200575964 -42088389 - L1MC4a LINE L1 -3960 2580 2454 253 281 0 0 chr1 200576318 200576400 -42087953 + T-rich Low_complexity Low_complexity 1 82 0 779 301 81 14 chr1 200576458 200576758 -42087595 - HAL1 LINE L1 -767 1740 1393 2038 153 0 0 chr1 200576758 200577065 -42087288 - AluSx SINE Alu -5 307 1 779 301 81 14 chr1 200577065 200577259 -42087094 - HAL1 LINE L1 -1114 1393 1213 304 331 113 24 chr1 200577303 200577675 -42086678 - L1MC4a LINE L1 -5033 1497 1093 318 50 0 0 chr1 200578154 200578194 -42086159 + (TG)n Simple_repeat Simple_repeat 2 41 0 370 296 37 30 chr1 200579122 200579257 -42085096 + L2 LINE L2 3137 3272 0 571 224 109 6 chr1 200579683 200579866 -42084487 - LTR33 LTR ERVL 0 521 320 204 125 0 0 chr1 200579912 200579944 -42084409 + (TG)n Simple_repeat Simple_repeat 1 32 0 287 211 84 0 chr1 200580031 200580102 -42084251 - LTR33 LTR ERVL -444 77 1 210 301 48 29 chr1 200580112 200580215 -42084138 - MIR SINE MIR -70 192 88 6775 176 37 33 chr1 200580505 200580671 -42083682 - Charlie1a DNA MER1_type -1306 1455 1291 1505 73 0 78 chr1 200580671 200580930 -42083423 + AluY SINE Alu 84 325 0 1530 164 16 4 chr1 200580931 200581187 -42083166 + AluJo SINE Alu 44 302 -10 1928 156 24 0 chr1 200581189 200581478 -42082875 + AluJb SINE Alu 2 297 -15 6775 176 37 33 chr1 200581478 200582748 -42081605 - Charlie1a DNA MER1_type -1470 1291 7 2219 138 75 45 chr1 200583316 200583651 -42080702 + Tigger2a DNA MER2_type 23 373 -2335 1130 37 0 0 chr1 200583651 200583785 -42080568 - L1PB1 LINE L1 0 6151 6018 2219 138 75 45 chr1 200583785 200583849 -42080504 + Tigger2a DNA MER2_type 373 434 0 853 157 0 15 chr1 200584226 200584360 -42079993 - FLAM_C SINE Alu 0 133 2 350 295 45 15 chr1 200584380 200584580 -42079773 + L2 LINE L2 2455 2660 -654 * 545 225 23 0 chr1 200584572 200584701 -42079652 + L2 LINE L2 3182 3313 0 258 276 11 0 chr1 200585094 200585181 -42079172 - L2 LINE L2 -721 2593 2506 265 313 10 10 chr1 200585698 200585794 -42078559 - L3 LINE CR1 -2 1575 1480 1933 127 31 21 chr1 200585809 200586100 -42078253 + AluSx SINE Alu 1 294 -18 2270 140 70 33 chr1 200586337 200586794 -42077559 - L1MB3 LINE L1 0 6183 5710 236 294 106 12 chr1 200586821 200586906 -42077447 + MIR SINE MIR 48 140 -122 1730 183 64 11 chr1 200588665 200588755 -42075598 + MLT2C1 LTR ERVL 1 85 -312 2189 141 0 0 chr1 200588755 200589061 -42075292 - AluSx SINE Alu -6 306 1 1730 183 64 11 chr1 200589061 200589347 -42075006 + MLT2C1 LTR ERVL 85 397 0 299 240 104 48 chr1 200589391 200589516 -42074837 + L2 LINE L2 3182 3313 0 184 389 49 0 chr1 200590329 200590473 -42073880 - L3b LINE CR1 -142 1441 1291 450 0 0 0 chr1 200591111 200591161 -42073192 + (CA)n Simple_repeat Simple_repeat 2 51 0 288 376 0 10 chr1 200591408 200591509 -42072844 - L2 LINE L2 -41 3231 3132 315 311 0 0 chr1 200592901 200592991 -42071362 + L2 LINE L2 3183 3272 0 292 284 0 37 chr1 200593098 200593179 -42071174 - MIR SINE MIR -139 123 46 647 249 73 6 chr1 200593916 200594093 -42070260 + MIR SINE MIR 17 205 -57 2407 70 0 32 chr1 200594148 200594461 -42069892 - AluY SINE Alu -8 303 1 2244 169 29 15 chr1 200595102 200595150 -42069203 - MLT2D LTR ERVL 0 414 368 468 0 0 0 chr1 200595150 200595202 -42069151 + (TG)n Simple_repeat Simple_repeat 2 53 0 2244 169 29 15 chr1 200595202 200595561 -42068792 - MLT2D LTR ERVL -46 368 1 373 344 36 5 chr1 200596701 200596896 -42067457 - MIR SINE MIR -14 248 48 197 348 34 11 chr1 200597173 200597262 -42067091 + MIR SINE MIR 58 148 -60 222 191 0 0 chr1 200598135 200598177 -42066176 + MIR SINE MIR 71 112 -150 291 335 90 0 chr1 200599298 200599465 -42064888 + MIR SINE MIR 69 250 -12 345 325 38 30 chr1 200599835 200600072 -42064281 + L1M4 LINE L1 4783 5021 -1125 416 238 66 149 chr1 200600097 200600519 -42063834 + L1ME4a LINE L1 4513 4878 -1268 1935 152 0 3 chr1 200600519 200600815 -42063538 - AluJb SINE Alu -17 295 1 416 238 66 149 chr1 200600815 200600954 -42063399 + L1ME4a LINE L1 4878 5027 -1119 1563 147 0 85 chr1 200600969 200601276 -42063077 + AluJb SINE Alu 11 291 -21 971 292 92 27 chr1 200601491 200602062 -42062291 + L1ME4a LINE L1 5255 5861 -260 244 250 210 0 chr1 200602530 200602630 -42061723 + L2 LINE L2 3152 3272 0 278 268 131 52 chr1 200603717 200603870 -42060483 - MIR SINE MIR -79 183 19 405 307 174 31 chr1 200604005 200604292 -42060061 - L2 LINE L2 -19 3253 2926 570 335 99 21 chr1 200604367 200604982 -42059371 - L2 LINE L2 -481 2833 2171 1833 170 6 10 chr1 200605797 200606108 -42058245 - AluJo SINE Alu 0 312 3 1300 218 118 70 chr1 200606376 200606916 -42057437 - MLT1F1 LTR MaLR -2 565 1 2260 118 0 0 chr1 200606989 200607294 -42057059 + AluSq SINE Alu 1 305 -8 2141 99 3 11 chr1 200607550 200607879 -42056474 + AluSx SINE Alu 1 327 0 286 230 162 0 chr1 200608610 200608684 -42055669 - L2 LINE L2 -17 3255 3170 698 196 58 17 chr1 200611480 200611653 -42052700 + MER5A DNA MER1_type 5 184 -5 666 199 19 56 chr1 200611702 200611863 -42052490 - MER5A DNA MER1_type -34 155 1 1579 148 124 27 chr1 200611982 200612313 -42052040 - MLT1A1 LTR MaLR 0 365 3 1422 209 118 15 chr1 200612319 200612658 -42051695 + MLT1A2 LTR MaLR 1 374 0 405 181 181 0 chr1 200613448 200613542 -42050811 + MER81 DNA DNA 4 114 0 1279 259 47 70 chr1 200613576 200613678 -42050675 - L2 LINE L2 0 3313 3210 1669 183 27 10 chr1 200613678 200613979 -42050374 + AluJo SINE Alu 1 306 -6 1279 259 47 70 chr1 200613979 200614751 -42049602 - L2 LINE L2 -103 3210 2451 208 310 0 0 chr1 200615067 200615138 -42049215 + MIR SINE MIR 170 240 -22 222 91 0 0 chr1 200616126 200616159 -42048194 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 333 100 0 0 chr1 200616859 200616909 -42047444 + (CA)n Simple_repeat Simple_repeat 1 50 0 216 238 0 62 chr1 200617612 200617692 -42046661 + MIR SINE MIR 49 123 -85 322 150 17 0 chr1 200617784 200617844 -42046509 + L1MC4a LINE L1 7168 7228 -580 617 188 0 27 chr1 200617845 200617975 -42046378 + MLT1F1 LTR MaLR 3 130 -447 2933 57 0 0 chr1 200618034 200618400 -42045953 - L1PA8 LINE L1 0 6172 5807 2608 181 41 1 chr1 200618540 200619038 -42045315 + L1MD3 LINE L1 6194 6359 0 21 0 0 0 chr1 200620535 200620556 -42043797 + AT_rich Low_complexity Low_complexity 1 21 0 2164 116 3 3 chr1 200621818 200622128 -42042225 - AluSx SINE Alu -2 310 1 24 0 0 0 chr1 200622284 200622308 -42042045 + AT_rich Low_complexity Low_complexity 1 24 0 432 208 201 27 chr1 200622634 200622783 -42041570 - MER5A DNA MER1_type -1 188 14 2275 79 3 10 chr1 200622991 200623296 -42041057 + AluY SINE Alu 1 303 -8 864 118 0 22 chr1 200624507 200624643 -42039710 + FLAM_C SINE Alu 1 133 0 3026 163 47 6 chr1 200625932 200626459 -42037894 - MER44D DNA MER2_type 0 605 2 2089 127 23 10 chr1 200626757 200627065 -42037288 + AluSx SINE Alu 1 312 0 930 56 112 0 chr1 200627211 200627336 -42037017 + MER85 DNA T2_type 1 139 0 552 211 104 9 chr1 200627489 200627750 -42036603 + MER33 DNA MER1_type 1 323 -1 232 279 33 0 chr1 200630659 200630720 -42033633 + L2 LINE L2 2995 3057 -215 837 193 54 6 chr1 200630974 200631140 -42033213 - MER5B DNA MER1_type 0 178 5 261 139 0 0 chr1 200631407 200631450 -42032903 + (TA)n Simple_repeat Simple_repeat 2 44 0 333 0 0 0 chr1 200631450 200631487 -42032866 + (CA)n Simple_repeat Simple_repeat 2 38 0 2358 80 3 0 chr1 200631489 200631775 -42032578 - AluSp SINE Alu -26 287 1 1677 161 3 37 chr1 200632436 200632734 -42031619 - AluJo SINE Alu -24 288 1 259 253 0 44 chr1 200633370 200633434 -42030919 - MER5A DNA MER1_type -87 102 42 1835 206 89 19 chr1 200633434 200633906 -42030447 + MLT1D LTR MaLR 1 505 0 259 253 0 44 chr1 200633906 200633932 -42030421 - MER5A DNA MER1_type -147 42 16 270 338 8 8 chr1 200633980 200634113 -42030240 + MER5B DNA MER1_type 43 175 -3 2230 101 10 7 chr1 200635499 200635806 -42028547 + AluSg SINE Alu 1 308 -2 387 285 174 0 chr1 200638203 200638347 -42026006 - MIR SINE MIR -74 188 20 287 313 55 0 chr1 200639989 200640117 -42024236 + MIR3 SINE MIR 24 158 -50 1064 145 25 0 chr1 200640265 200640424 -42023929 + AluSg/x SINE Alu 133 295 -15 188 159 0 23 chr1 200642536 200642580 -42021773 + GA-rich Low_complexity Low_complexity 2 44 0 205 223 132 50 chr1 200644300 200644421 -42019932 - L3b LINE CR1 -203 1380 1250 203 281 62 52 chr1 200645519 200645615 -42018738 + MIR SINE MIR 149 245 -17 41 48 0 0 chr1 200646013 200646075 -42018278 + AT_rich Low_complexity Low_complexity 1 62 0 329 254 161 31 chr1 200646580 200646710 -42017643 - MIR3 SINE MIR -25 183 37 456 257 35 9 chr1 200647634 200647747 -42016606 + L2 LINE L2 3180 3295 -18 394 283 118 13 chr1 200647974 200648126 -42016227 + MIR SINE MIR 29 196 -66 420 37 0 0 chr1 200651363 200651417 -42012936 + (CA)n Simple_repeat Simple_repeat 2 55 0 795 75 0 0 chr1 200653016 200653123 -42011230 + (CGGGG)n Simple_repeat Simple_repeat 1 107 0 206 332 30 52 chr1 200654463 200654579 -42009774 - MIR3 SINE MIR -105 103 5 198 323 0 16 chr1 200655093 200655155 -42009198 - L2 LINE L2 -100 3172 3112 360 59 0 0 chr1 200658780 200658831 -42005522 + (TC)n Simple_repeat Simple_repeat 1 51 0 1264 157 87 4 chr1 200660967 200661196 -42003157 - LTR9B LTR ERV1 0 644 397 402 335 45 0 chr1 200662301 200662525 -42001828 - MER102a DNA MER1_type -2 328 95 22 0 0 0 chr1 200662623 200662645 -42001708 + AT_rich Low_complexity Low_complexity 1 22 0 234 287 213 22 chr1 200662973 200663203 -42001150 - L3 LINE CR1 -23 1554 1281 1310 279 50 8 chr1 200663630 200664114 -42000239 - L1M4 LINE L1 -844 5302 4799 720 230 77 52 chr1 200664407 200664655 -41999698 + MIR SINE MIR 8 261 -1 385 321 121 38 chr1 200664746 200664986 -41999367 + MIR SINE MIR 3 262 0 390 214 40 79 chr1 200665062 200665188 -41999165 - 5S rRNA rRNA 0 121 1 2118 124 0 34 chr1 200667859 200668157 -41996196 + AluSx SINE Alu 1 288 -24 575 256 42 36 chr1 200668576 200668744 -41995609 + MIR SINE MIR 79 247 -15 400 326 99 29 chr1 200668923 200669236 -41995117 - L3 LINE CR1 -222 1355 1021 396 303 84 13 chr1 200672308 200672463 -41991890 - MIR SINE MIR -50 212 47 543 225 98 48 chr1 200672506 200672737 -41991616 + MIR SINE MIR 19 262 0 203 355 36 22 chr1 200673559 200673697 -41990656 + L2 LINE L2 2618 2757 -557 342 293 61 0 chr1 200673887 200673986 -41990367 - L2 LINE L2 -9 3304 3200 641 215 40 60 chr1 200674021 200674221 -41990132 - MIR SINE MIR 0 262 67 2129 82 0 0 chr1 200674411 200674694 -41989659 + AluSx SINE Alu 27 309 0 605 234 0 8 chr1 200675435 200675559 -41988794 + L2 LINE L2 3191 3313 0 261 333 148 0 chr1 200675541 200675649 -41988704 - MIR SINE MIR -92 170 47 * 25 31 0 0 chr1 200675794 200675826 -41988527 + AT_rich Low_complexity Low_complexity 1 32 0 207 204 0 0 chr1 200675907 200675956 -41988397 + (TA)n Simple_repeat Simple_repeat 1 49 0 240 111 0 0 chr1 200676385 200676430 -41987923 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 823 224 103 0 chr1 200677030 200677244 -41987109 + MIR SINE MIR 19 254 -8 192 333 10 20 chr1 200678945 200679028 -41985325 - L2 LINE L2 -4 3309 3226 2117 160 54 5 chr1 200679028 200679453 -41984900 + L1MB3 LINE L1 5737 6182 -1 192 333 10 20 chr1 200679453 200679471 -41984882 - L2 LINE L2 -87 3226 3209 202 346 12 37 chr1 200679816 200679897 -41984456 + MIR3 SINE MIR 108 186 -22 184 325 60 12 chr1 200680381 200680464 -41983889 - L2 LINE L2 0 3313 3227 215 288 0 38 chr1 200680548 200680628 -41983725 - L2 LINE L2 0 3313 3237 759 227 160 13 chr1 200680649 200680874 -41983479 + MIR SINE MIR 5 262 0 748 265 203 5 chr1 200681143 200681513 -41982840 + L1M4 LINE L1 5256 5698 -476 248 219 62 0 chr1 200681527 200681655 -41982698 + (TATG)n Simple_repeat Simple_repeat 2 137 0 1775 209 67 35 chr1 200681655 200682148 -41982205 + L1ME3A LINE L1 5659 6167 -3 1732 165 0 46 chr1 200682161 200682488 -41981865 + AluJo SINE Alu 1 312 0 246 62 0 0 chr1 200683662 200683694 -41980659 + (TA)n Simple_repeat Simple_repeat 2 33 0 1001 156 13 89 chr1 200684739 200684976 -41979377 - MER20 DNA MER1_type 0 219 1 693 190 104 18 chr1 200686470 200686633 -41977720 - MER5B DNA MER1_type -1 177 1 650 278 31 48 chr1 200686675 200686902 -41977451 + MIR SINE MIR 40 262 0 213 293 69 52 chr1 200687304 200687420 -41976933 + L2 LINE L2 3191 3308 -5 188 200 40 120 chr1 200688178 200688278 -41976075 + L2 LINE L2 434 525 -2789 683 161 106 6 chr1 200688554 200688715 -41975638 + MER112 DNA MER1_type 77 253 -7 2172 66 33 33 chr1 200689192 200689496 -41974857 - AluSc SINE Alu -5 304 1 2067 104 3 3 chr1 200690159 200690485 -41973868 - AluSq SINE Alu 0 313 1 378 231 22 44 chr1 200690825 200690916 -41973437 - L2 LINE L2 0 3272 3184 693 278 124 0 chr1 200691990 200692263 -41972090 + Charlie7 DNA MER1_type 35 341 -2271 * 1892 248 134 26 chr1 200692261 200692398 -41971955 + Charlie7 DNA MER1_type 1461 1582 -1030 1620 169 27 7 chr1 200692398 200692693 -41971660 + AluJo SINE Alu 1 301 -11 1892 248 134 26 chr1 200692693 200693358 -41970995 + Charlie7 DNA MER1_type 1582 2350 -262 2261 229 126 112 chr1 200693385 200693862 -41970491 - L2 LINE L2 -1 3312 2843 602 238 144 60 chr1 200693862 200694161 -41970192 + MER33 DNA MER1_type 1 324 0 2261 229 126 112 chr1 200694161 200694745 -41969608 - L2 LINE L2 -470 2843 2268 2434 58 10 3 chr1 200694745 200695053 -41969300 + AluY SINE Alu 1 310 -1 486 184 0 20 chr1 200695056 200695154 -41969199 - L1MC5 LINE L1 -52 7909 7814 2261 229 126 112 chr1 200695154 200695785 -41968568 - L2 LINE L2 -1046 2267 1485 308 259 74 25 chr1 200695790 200695952 -41968401 + Charlie7 DNA MER1_type 2442 2611 -1 397 288 24 8 chr1 200696845 200696970 -41967383 + L2 LINE L2 3182 3308 -5 222 118 0 0 chr1 200697251 200697285 -41967068 + (A)n Simple_repeat Simple_repeat 1 34 0 2090 140 75 45 chr1 200747767 200748102 -41916251 + Tigger2a DNA MER2_type 23 373 -2335 1122 37 0 0 chr1 200748102 200748236 -41916117 - L1PB1 LINE L1 0 6151 6018 2090 140 75 45 chr1 200748236 200748300 -41916053 + Tigger2a DNA MER2_type 373 434 0 195 299 104 0 chr1 200748596 200748673 -41915680 - MIR SINE MIR -3 259 175 876 157 0 15 chr1 200748677 200748811 -41915542 - FLAM_C SINE Alu 0 133 2 605 267 54 13 chr1 200748812 200749152 -41915201 + L2 LINE L2 2427 3313 0 296 276 11 0 chr1 200749545 200749632 -41914721 - L2 LINE L2 -721 2593 2506 310 315 9 19 chr1 200750149 200750257 -41914096 - L3 LINE CR1 -2 1575 1469 1957 127 31 21 chr1 200750260 200750551 -41913802 + AluSx SINE Alu 1 294 -18 2206 144 70 33 chr1 200750788 200751245 -41913108 - L1MB3 LINE L1 0 6183 5710 263 319 110 16 chr1 200751247 200751390 -41912963 + MIR SINE MIR 23 186 -22 1741 179 70 8 chr1 200753116 200753203 -41911150 + MLT2C1 LTR ERVL 1 81 -316 2224 142 0 0 chr1 200753203 200753512 -41910841 - AluSx SINE Alu -3 309 1 1741 179 70 8 chr1 200753512 200753798 -41910555 + MLT2C1 LTR ERVL 81 397 0 360 240 104 48 chr1 200753842 200753967 -41910386 + L2 LINE L2 3182 3313 0 2456 181 38 4 chr1 200755241 200755739 -41908614 - L1MD3 LINE L1 0 7995 7481 2910 57 0 3 chr1 200755879 200756246 -41908107 + L1PA8 LINE L1 5807 6172 0 560 210 0 8 chr1 200756315 200756434 -41907919 - MLT1F1 LTR MaLR -447 120 3 306 150 17 0 chr1 200756435 200756495 -41907858 - L1MC4a LINE L1 -580 7228 7168 249 219 42 126 chr1 200756572 200756691 -41907662 - MIR SINE MIR -74 134 25 387 89 0 0 chr1 200757370 200757426 -41906927 + (TG)n Simple_repeat Simple_repeat 1 56 0 201 121 0 0 chr1 200758126 200758159 -41906194 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 240 310 0 0 chr1 200759147 200759218 -41905135 - MIR SINE MIR -22 240 170 1490 260 47 70 chr1 200759534 200760306 -41904047 + L2 LINE L2 2451 3210 -103 1711 173 33 17 chr1 200760306 200760607 -41903746 - AluJo SINE Alu -6 306 1 1490 260 47 70 chr1 200760607 200760709 -41903644 + L2 LINE L2 3210 3313 0 416 181 181 0 chr1 200760743 200760837 -41903516 - MER81 DNA DNA 0 114 4 1331 209 118 15 chr1 200761627 200761966 -41902387 - MLT1A2 LTR MaLR 0 374 1 1608 148 124 27 chr1 200761972 200762303 -41902050 + MLT1A1 LTR MaLR 3 365 0 738 199 19 56 chr1 200762422 200762583 -41901770 + MER5A DNA MER1_type 1 155 -34 773 196 58 17 chr1 200762632 200762805 -41901548 - MER5A DNA MER1_type -5 184 5 192 360 0 11 chr1 200764725 200764814 -41899539 + L3b LINE CR1 1338 1425 -158 317 254 236 0 chr1 200765577 200765687 -41898666 + L2 LINE L2 3133 3268 -4 2152 102 3 11 chr1 200766379 200766708 -41897645 - AluSx SINE Alu 0 327 1 2254 121 0 0 chr1 200766964 200767269 -41897084 - AluSq SINE Alu -8 305 1 1188 223 118 70 chr1 200767342 200767882 -41896471 + MLT1F1 LTR MaLR 1 565 -2 1868 177 3 6 chr1 200768150 200768461 -41895892 + AluJo SINE Alu 3 312 0 824 343 138 22 chr1 200769276 200770253 -41894100 + L2 LINE L2 2171 3253 -19 347 278 123 49 chr1 200770388 200770550 -41893803 + MIR SINE MIR 19 192 -70 289 250 210 0 chr1 200771628 200771728 -41892625 - L2 LINE L2 0 3272 3152 853 292 92 27 chr1 200772196 200772767 -41891586 - L1ME4a LINE L1 -260 5861 5255 822 272 46 124 chr1 200772784 200772982 -41891371 - L1ME4a LINE L1 -913 5233 5021 1589 150 0 85 chr1 200772982 200773289 -41891064 - AluJb SINE Alu -21 291 11 822 272 46 124 chr1 200773289 200773443 -41890910 - L1ME4a LINE L1 -1125 5021 4857 1968 154 0 3 chr1 200773443 200773742 -41890611 + AluJb SINE Alu 1 298 -14 822 272 46 124 chr1 200773742 200774218 -41890135 - L1ME4a LINE L1 -1289 4857 4469 478 332 45 28 chr1 200774186 200774433 -41889920 - L1M4 LINE L1 -1125 5021 4771 * 367 348 98 5 chr1 200774793 200774997 -41889356 - MIR SINE MIR -12 250 28 244 191 0 0 chr1 200776081 200776123 -41888230 - MIR SINE MIR -150 112 71 238 358 83 8 chr1 200776965 200777085 -41887268 - MIR3 SINE MIR -22 186 58 460 339 36 5 chr1 200777362 200777557 -41886796 + MIR SINE MIR 48 248 -14 2256 169 29 15 chr1 200778697 200779056 -41885297 + MLT2D LTR ERVL 1 368 -46 468 0 0 0 chr1 200779056 200779108 -41885245 + (CA)n Simple_repeat Simple_repeat 2 53 0 2256 169 29 15 chr1 200779108 200779156 -41885197 + MLT2D LTR ERVL 368 414 0 2422 70 0 32 chr1 200779797 200780110 -41884243 + AluY SINE Alu 1 303 -8 714 258 70 5 chr1 200780156 200780342 -41884011 - MIR SINE MIR -48 214 17 187 323 15 83 chr1 200780789 200780922 -41883431 + L2 LINE L2 3189 3312 -1 322 284 0 37 chr1 200781079 200781160 -41883193 + MIR SINE MIR 46 123 -139 356 311 0 0 chr1 200781267 200781357 -41882996 - L2 LINE L2 0 3272 3183 314 389 0 9 chr1 200782742 200782850 -41881503 + L2 LINE L2 3125 3231 -41 414 0 0 0 chr1 200783097 200783143 -41881210 + (TG)n Simple_repeat Simple_repeat 2 47 0 252 361 56 7 chr1 200783781 200783925 -41880428 + L3b LINE CR1 1291 1441 -142 345 307 61 0 chr1 200784797 200784911 -41879442 + L2 LINE L2 3193 3313 0 214 211 0 0 chr1 200787688 200787726 -41876627 + T-rich Low_complexity Low_complexity 1 38 0 1008 279 12 0 chr1 200789445 200789692 -41874661 + MIR SINE MIR 8 257 -5 731 163 0 22 chr1 200794112 200794247 -41870106 - FLAM_C SINE Alu 0 133 2 690 161 8 0 chr1 200795152 200795270 -41869083 + MER94 DNA DNA 14 132 -2 1001 180 29 103 chr1 200795817 200796167 -41868186 + MER33 DNA MER1_type 1 324 0 500 288 16 49 chr1 200796177 200796361 -41867992 - MIR SINE MIR -78 184 7 521 231 192 0 chr1 200797479 200797661 -41866692 + MIR SINE MIR 44 260 -2 180 0 0 0 chr1 200797677 200797697 -41866656 + (CAT)n Simple_repeat Simple_repeat 1 20 0 184 240 20 0 chr1 200797759 200797809 -41866544 + L2 LINE L2 3263 3313 0 352 276 181 0 chr1 200798190 200798317 -41866036 - MIR SINE MIR -110 152 3 361 302 99 28 chr1 200798792 200799004 -41865349 - MIR SINE MIR -14 248 22 181 0 0 65 chr1 200799112 200799143 -41865210 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 356 300 36 29 chr1 200799151 200799291 -41865062 - MER5B DNA MER1_type -37 141 1 435 233 62 27 chr1 200801196 200801342 -41863011 + MIR3 SINE MIR 6 156 -52 896 217 18 35 chr1 200801580 200801806 -41862547 + MIR SINE MIR 38 259 -3 793 226 43 39 chr1 200802558 200802766 -41861587 + MER3 DNA MER1_type 1 209 0 394 294 25 0 chr1 200802791 200802910 -41861443 - MIR SINE MIR -93 169 48 232 203 13 25 chr1 200804409 200804488 -41859865 + L1ME4a LINE L1 6006 6083 -38 243 191 96 75 chr1 200807364 200807458 -41856895 - L2 LINE L2 0 3272 3177 312 102 0 0 chr1 200807594 200807643 -41856710 + (TG)n Simple_repeat Simple_repeat 1 49 0 341 254 70 52 chr1 200807670 200807850 -41856503 - L2 LINE L2 -219 3053 2867 360 0 0 0 chr1 200807850 200807890 -41856463 + (TG)n Simple_repeat Simple_repeat 2 41 0 341 254 70 52 chr1 200807890 200807922 -41856431 - L2 LINE L2 -405 2867 2837 182 281 0 35 chr1 200807920 200807977 -41856376 + L2 LINE L2 3217 3271 -1 * 2415 96 0 0 chr1 200808004 200808307 -41856046 - AluSx SINE Alu -9 303 1 2244 151 129 22 chr1 200809831 200810335 -41854018 + MER74A LTR ERVL 1 558 0 559 318 17 0 chr1 200810656 200810829 -41853524 + MIR3 SINE MIR 32 207 -1 22 0 0 0 chr1 200811129 200811151 -41853202 + AT_rich Low_complexity Low_complexity 1 22 0 349 305 40 20 chr1 200811288 200811439 -41852914 - MIR SINE MIR -96 166 13 1854 144 31 17 chr1 200811598 200811889 -41852464 + AluJb SINE Alu 1 295 -17 237 224 412 0 chr1 200812782 200812867 -41851486 - L2 LINE L2 -2 3270 3151 404 246 101 22 chr1 200814251 200814389 -41849964 + MIR3 SINE MIR 45 193 -15 461 297 27 7 chr1 200815701 200815849 -41848504 + MIR3 SINE MIR 58 208 0 211 224 86 0 chr1 200815867 200815925 -41848428 + L2 LINE L2 3205 3267 -5 643 262 0 7 chr1 200818266 200818415 -41845938 - MIR SINE MIR -113 149 2 376 323 16 8 chr1 200818958 200819085 -41845268 - MIR3 SINE MIR -40 168 41 349 317 28 44 chr1 200820656 200820836 -41843517 + MIR SINE MIR 35 211 -51 339 309 40 20 chr1 200822141 200822290 -41842063 + MIR SINE MIR 20 171 -91 191 255 184 10 chr1 200822367 200822465 -41841888 - L2 LINE L2 -21 3251 3137 269 254 44 35 chr1 200822918 200823032 -41841321 - MIR3 SINE MIR -4 204 90 237 258 0 0 chr1 200823507 200823569 -41840784 - MIR SINE MIR -117 91 30 510 312 119 70 chr1 200824894 200825497 -41838856 + L2 LINE L2 2216 2848 -466 498 287 149 7 chr1 200826342 200826570 -41837783 + MIR SINE MIR 1 258 -4 246 81 0 0 chr1 200827078 200827115 -41837238 + (TG)n Simple_repeat Simple_repeat 1 37 0 6255 113 117 15 chr1 200827457 200828111 -41836242 + Tigger3b DNA MER2_type 1 587 -2441 2468 77 3 0 chr1 200828111 200828409 -41835944 + AluSp SINE Alu 1 299 -14 6255 113 117 15 chr1 200828409 200828871 -41835482 + Tigger3b DNA MER2_type 587 1231 0 304 301 103 13 chr1 200828931 200829087 -41835266 + L2 LINE L2 2924 3093 -179 469 241 129 30 chr1 200829404 200829636 -41834717 - L3b LINE CR1 -226 1357 1103 627 250 44 0 chr1 200830905 200831085 -41833268 - MIR SINE MIR -11 251 64 548 313 40 44 chr1 200831656 200831905 -41832448 + MIR SINE MIR 15 262 0 216 111 0 0 chr1 200832558 200832594 -41831759 + (TG)n Simple_repeat Simple_repeat 2 37 0 360 229 49 41 chr1 200834056 200834178 -41830175 + MIR SINE MIR 64 186 -76 249 267 0 0 chr1 200834544 200834604 -41829749 + L2 LINE L2 3254 3313 0 2087 167 59 11 chr1 200834655 200835099 -41829254 + MLT1C LTR MaLR 3 467 0 2302 120 3 0 chr1 200836076 200836385 -41827968 + AluSx SINE Alu 1 310 -2 1955 209 21 67 chr1 200836407 200836823 -41827530 - L1MC4a LINE L1 -403 7405 6971 2289 113 3 10 chr1 200836823 200837132 -41827221 + AluSx SINE Alu 1 307 -5 1610 175 0 42 chr1 200837132 200837418 -41826935 - AluJo SINE Alu -30 282 9 1955 209 21 67 chr1 200837418 200837594 -41826759 - L1MC4a LINE L1 -835 6973 6846 2132 173 36 9 chr1 200837603 200838028 -41826325 + L1MC4a LINE L1 7373 7808 0 212 157 59 0 chr1 200838086 200838137 -41826216 + (AAATG)n Simple_repeat Simple_repeat 2 55 0 703 210 25 19 chr1 200839118 200839275 -41825078 + MIR SINE MIR 49 206 -56 474 326 96 17 chr1 200840697 200840927 -41823426 + MIR SINE MIR 11 258 -4 521 312 93 33 chr1 200841770 200841985 -41822368 - MIR SINE MIR -17 245 18 745 288 55 5 chr1 200842588 200842807 -41821546 + MIR SINE MIR 14 243 -19 209 310 0 0 chr1 200844910 200844968 -41819385 + C-rich Low_complexity Low_complexity 6 63 0 710 73 0 0 chr1 200845110 200845206 -41819147 + L1MA1 LINE L1 6207 6302 0 26 0 0 0 chr1 200845206 200845232 -41819121 + AT_rich Low_complexity Low_complexity 1 26 0 296 268 63 35 chr1 200846549 200846691 -41817662 + MER20B DNA MER1_type 31 176 -607 295 335 114 69 chr1 200847104 200847349 -41817004 + L2 LINE L2 2987 3242 -30 339 44 0 0 chr1 200848043 200848088 -41816265 + (TC)n Simple_repeat Simple_repeat 2 46 0 369 86 0 0 chr1 200848102 200848160 -41816193 + (GA)n Simple_repeat Simple_repeat 1 58 0 230 233 0 0 chr1 200849013 200849056 -41815297 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 143 0 0 chr1 200849809 200849844 -41814509 + MIR SINE MIR 120 154 -108 201 262 206 16 chr1 200850014 200850140 -41814213 + MIR SINE MIR 53 202 -60 566 124 22 0 chr1 200850654 200850743 -41813610 - MER5A DNA MER1_type -98 91 1 234 350 109 44 chr1 200852548 200852685 -41811668 - L2 LINE L2 -2 3270 3125 2340 92 3 0 chr1 200852695 200852989 -41811364 + AluSc SINE Alu 1 295 -14 474 286 71 22 chr1 200854245 200854427 -41809926 - MER63A DNA MER1_type -19 191 1 306 332 56 17 chr1 200854435 200854648 -41809705 + MIR3 SINE MIR 3 223 -39 216 287 52 43 chr1 200856967 200857082 -41807271 - L2 LINE L2 -16 3297 3182 309 239 310 0 chr1 200858027 200858140 -41806213 + MIR3 SINE MIR 40 187 -21 25 0 0 0 chr1 200858190 200858215 -41806138 + AT_rich Low_complexity Low_complexity 1 25 0 993 124 0 7 chr1 200858973 200859110 -41805243 - AluJo SINE Alu -176 136 1 221 146 21 0 chr1 200859514 200859562 -41804791 + CT-rich Low_complexity Low_complexity 2 50 0 378 0 0 0 chr1 200859562 200859604 -41804749 + (CA)n Simple_repeat Simple_repeat 1 42 0 289 297 0 40 chr1 200860227 200860323 -41804030 + L3b LINE CR1 1283 1375 -204 2391 82 105 9 chr1 200860323 200860665 -41803688 - MER51B LTR ERV1 -2 375 1 2198 132 0 0 chr1 200860676 200860980 -41803373 - AluSg SINE Alu -6 304 1 933 204 53 91 chr1 200861053 200861203 -41803150 + MIR SINE MIR 8 145 -117 1643 176 68 4 chr1 200861203 200861481 -41802872 + AluJo SINE Alu 1 296 -16 933 204 53 91 chr1 200861481 200861594 -41802759 + MIR SINE MIR 145 261 -1 345 293 78 17 chr1 200863728 200863844 -41800509 - MIR SINE MIR -60 202 80 304 342 50 17 chr1 200865424 200865544 -41798809 - L2 LINE L2 -5 3267 3144 708 294 133 59 chr1 200865938 200866381 -41797972 + L3 LINE CR1 792 1267 -310 212 311 156 25 chr1 200866466 200866588 -41797765 + L3 LINE CR1 1439 1576 -1 2314 109 3 16 chr1 200868834 200869147 -41795206 - AluSx SINE Alu -3 309 1 467 289 187 6 chr1 200869760 200869926 -41794427 - MER91A DNA MER1_type 0 196 1 2028 98 107 23 chr1 200870626 200870972 -41793381 + THE1C LTR MaLR 1 375 0 288 285 22 22 chr1 200870995 200871174 -41793179 + (CA)n Simple_repeat Simple_repeat 2 180 0 403 303 52 56 chr1 200871543 200871794 -41792559 + MIR SINE MIR 11 260 -2 204 330 0 23 chr1 200871898 200871986 -41792367 + GA-rich Low_complexity Low_complexity 4 89 0 1859 133 34 34 chr1 200872129 200872483 -41791870 - L1MB8 LINE L1 -1 6177 5824 1832 118 0 0 chr1 200873348 200873611 -41790742 + L1PA14 LINE L1 5890 6152 -9 2544 84 0 0 chr1 200873630 200873940 -41790413 + AluSq SINE Alu 1 310 -3 544 294 101 18 chr1 200875730 200875958 -41788395 - MIR SINE MIR -14 248 2 497 265 136 8 chr1 200877644 200877814 -41786539 - MIR SINE MIR -41 221 34 2363 75 20 7 chr1 200877986 200878292 -41786061 - AluY SINE Alu -1 310 1 315 337 0 0 chr1 200878294 200878380 -41785973 - L2 LINE L2 -16 3297 3212 308 372 104 26 chr1 200878848 200879079 -41785274 + L2 LINE L2 2898 3146 -126 336 356 32 21 chr1 200881161 200881349 -41783004 + MIR SINE MIR 25 214 -48 482 319 32 22 chr1 200881684 200881869 -41782484 + MIR SINE MIR 20 206 -56 875 235 70 5 chr1 200882049 200882262 -41782091 - MIR SINE MIR -1 261 35 211 181 106 96 chr1 200882342 200882436 -41781917 + MIR3 SINE MIR 99 193 -15 185 211 64 110 chr1 200882570 200882679 -41781674 + L2 LINE L2 3142 3245 -68 264 292 42 62 chr1 200883049 200883193 -41781160 + MIR3 SINE MIR 9 149 -59 23 0 0 0 chr1 200883517 200883540 -41780813 + AT_rich Low_complexity Low_complexity 1 23 0 325 198 139 23 chr1 200884994 200885080 -41779273 + MIR3 SINE MIR 110 205 -3 1560 247 52 27 chr1 200885182 200885627 -41778726 + MLT1G LTR MaLR 135 590 0 598 274 152 17 chr1 200886161 200886391 -41777962 - MIR SINE MIR 0 262 2 2049 170 6 0 chr1 200887422 200887775 -41776578 + MER47A DNA MER2_type 12 366 0 917 93 0 0 chr1 200887890 200888008 -41776345 + AluJb SINE Alu 1 118 -194 2028 127 0 41 chr1 200888037 200888321 -41776032 + AluSx SINE Alu 6 282 -30 196 42 0 0 chr1 200888321 200888345 -41776008 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2028 127 0 41 chr1 200888345 200888375 -41775978 + AluSx SINE Alu 282 312 0 487 231 71 59 chr1 200888453 200888622 -41775731 - MIR3 SINE MIR -1 207 37 211 338 14 0 chr1 200888810 200888881 -41775472 - MIR SINE MIR -140 122 51 451 223 74 23 chr1 200889853 200890028 -41774325 + HAL1b LINE L1 1158 1341 -7 806 178 59 24 chr1 200892387 200892556 -41771797 + MER5B DNA MER1_type 1 175 -3 736 193 105 18 chr1 200892569 200892740 -41771613 - MER5A DNA MER1_type -2 187 2 219 272 144 48 chr1 200893427 200893552 -41770801 + L2 LINE L2 3136 3272 0 419 289 202 35 chr1 200896181 200896314 -41768039 + L3b LINE CR1 1172 1282 -301 1834 160 7 10 chr1 200896314 200896608 -41767745 - AluJb SINE Alu -19 293 1 419 289 202 35 chr1 200896608 200896786 -41767567 + L3b LINE CR1 1282 1535 -48 632 280 38 19 chr1 200896811 200897022 -41767331 - MIR SINE MIR -13 249 35 198 103 0 0 chr1 200897534 200897563 -41766790 + (TAG)n Simple_repeat Simple_repeat 1 29 0 380 303 20 43 chr1 200897662 200897857 -41766496 + MIR SINE MIR 18 206 -40 261 260 183 0 chr1 200897878 200897982 -41766371 - L2 LINE L2 -19 3294 3172 412 163 58 9 chr1 200898436 200898770 -41765583 + (TG)n Simple_repeat Simple_repeat 1 350 0 289 139 47 12 chr1 200898802 200898888 -41765465 + (TG)n Simple_repeat Simple_repeat 2 90 0 192 158 0 0 chr1 200899106 200899144 -41765209 + (CA)n Simple_repeat Simple_repeat 2 39 0 180 111 0 0 chr1 200899481 200899508 -41764845 + (CA)n Simple_repeat Simple_repeat 2 28 0 452 283 140 11 chr1 200900915 200901136 -41763217 - MIR SINE MIR -11 251 1 433 343 28 17 chr1 200901650 200901831 -41762522 + L2 LINE L2 2566 2748 -566 468 51 0 0 chr1 200901945 200902004 -41762349 + (CA)n Simple_repeat Simple_repeat 1 59 0 273 345 179 48 chr1 200902044 200902418 -41761935 + L2 LINE L2 2850 3272 0 870 282 3 18 chr1 200902456 200902676 -41761677 - MIR SINE MIR -4 258 43 191 333 20 10 chr1 200904089 200904191 -41760162 + MIR SINE MIR 119 221 -41 498 204 56 3 chr1 200905695 200905838 -41758515 - MIR SINE MIR -43 165 13 216 111 0 0 chr1 200907038 200907074 -41757279 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 205 218 36 0 chr1 200907281 200907336 -41757017 + GA-rich Low_complexity Low_complexity 1 57 0 202 269 8 50 chr1 200907495 200907614 -41756739 + CT-rich Low_complexity Low_complexity 1 114 0 203 350 120 8 chr1 200908542 200908659 -41755694 - MIR SINE MIR -70 192 63 218 308 22 33 chr1 200909774 200909865 -41754488 - MIR SINE MIR -70 192 103 232 286 71 12 chr1 200909900 200909984 -41754369 - L2 LINE L2 -13 3259 3171 282 247 163 27 chr1 200910795 200910920 -41753433 + MIR SINE MIR 22 165 -56 447 284 44 27 chr1 200911565 200911748 -41752605 + MIR3 SINE MIR 16 201 -7 1030 257 9 0 chr1 200911885 200912107 -41752246 - MIR SINE MIR -37 225 2 217 167 71 0 chr1 200912846 200912888 -41751465 + L2 LINE L2 3015 3059 -213 386 232 37 0 chr1 200913030 200913112 -41751241 + L2 LINE L2 3225 3309 -4 619 236 33 22 chr1 200914547 200914763 -41749590 - MIR SINE MIR -40 222 6 475 329 61 5 chr1 200917225 200917424 -41746929 + MIR SINE MIR 4 212 -50 504 223 116 0 chr1 200917595 200917707 -41746646 + L2 LINE L2 3189 3313 0 456 279 122 0 chr1 200917719 200917866 -41746487 - MIR SINE MIR -70 192 28 333 0 0 0 chr1 200917952 200917989 -41746364 + (T)n Simple_repeat Simple_repeat 1 37 0 327 323 18 55 chr1 200918952 200919116 -41745237 + MIR3 SINE MIR 16 173 -35 275 0 29 0 chr1 200920065 200920100 -41744253 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 189 288 27 125 chr1 200920100 200920276 -41744077 - L2 LINE L2 -90 3182 3023 401 268 32 68 chr1 200920550 200920740 -41743613 - MIR SINE MIR 0 262 80 1599 154 15 26 chr1 200920823 200921096 -41743257 + AluJo SINE Alu 17 286 -26 359 221 79 47 chr1 200921104 200921231 -41743122 + MIR SINE MIR 132 262 0 356 338 87 23 chr1 200921913 200922179 -41742174 - L2 LINE L2 -18 3254 2972 486 294 104 32 chr1 200922261 200922570 -41741783 - L2 LINE L2 -431 2883 2553 207 287 149 11 chr1 200922630 200922724 -41741629 + MIR SINE MIR 24 130 -78 746 270 44 27 chr1 200923513 200923732 -41740621 - MIR SINE MIR -4 258 31 21 0 0 0 chr1 200924121 200924142 -41740211 + AT_rich Low_complexity Low_complexity 1 21 0 413 286 160 30 chr1 200925267 200925498 -41738855 + MIR SINE MIR 2 262 0 505 281 175 15 chr1 200925624 200925838 -41738515 - MIR SINE MIR -2 260 10 708 306 20 19 chr1 200928980 200929292 -41735061 - L1ME LINE L1 -353 5811 5497 306 154 4 151 chr1 200929413 200929538 -41734815 + Charlie8 DNA MER1_type 221 2406 -11 292 263 59 17 chr1 200929797 200929915 -41734438 - MIR SINE MIR -60 202 80 225 277 69 146 chr1 200929927 200930072 -41734281 - MIR SINE MIR -6 256 101 1879 114 23 4 chr1 200930072 200930335 -41734018 + AluSq SINE Alu 1 268 -45 954 26 0 0 chr1 200930343 200930456 -41733897 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 225 277 69 146 chr1 200930456 200930535 -41733818 - MIR SINE MIR -168 94 42 231 356 99 0 chr1 200931352 200931453 -41732900 - L2 LINE L2 -54 3218 3108 180 219 141 16 chr1 200932127 200932191 -41732162 + L3 LINE CR1 315 386 -1191 564 251 58 52 chr1 200933881 200934072 -41730281 - MIR SINE MIR -25 237 46 300 305 38 19 chr1 200934660 200934765 -41729588 + L3b LINE CR1 1357 1463 -120 783 257 41 29 chr1 200935743 200935988 -41728365 + MIR SINE MIR 12 259 -3 2435 93 0 0 chr1 200936352 200936653 -41727700 + AluSc SINE Alu 1 301 -8 421 255 17 130 chr1 200936663 200936878 -41727475 + MIR3 SINE MIR 6 198 -10 1984 125 0 52 chr1 200937520 200937849 -41726504 - AluSx SINE Alu 0 312 1 204 296 14 0 chr1 200937935 200938006 -41726347 + (TAG)n Simple_repeat Simple_repeat 1 72 0 233 394 103 0 chr1 200938011 200938166 -41726187 - MIR SINE MIR -3 259 89 309 294 73 22 chr1 200938591 200938727 -41725626 - MIR SINE MIR -21 241 99 379 226 100 88 chr1 200938774 200938917 -41725436 + L2 LINE L2 3072 3221 -92 2294 115 0 3 chr1 200938917 200939221 -41725132 - AluSx SINE Alu -9 303 1 379 226 100 88 chr1 200939221 200939316 -41725037 + L2 LINE L2 3221 3313 0 * 410 243 243 14 chr1 200939310 200939458 -41724895 - MIR SINE MIR -61 201 20 220 255 20 20 chr1 200939475 200939538 -41724815 + L3 LINE CR1 1505 1565 -12 260 197 33 16 chr1 200940652 200940713 -41723640 + MIR SINE MIR 84 145 -117 183 380 124 0 chr1 200941618 200941731 -41722622 - L2 LINE L2 -20 3252 3126 1027 258 12 0 chr1 200942588 200942828 -41721525 - L3 LINE CR1 -61 1516 1274 922 268 16 12 chr1 200942825 200943068 -41721285 + MIR SINE MIR 6 249 -13 * 998 190 0 65 chr1 200944016 200944216 -41720137 + MER5A DNA MER1_type 2 188 -1 25 0 0 0 chr1 200945446 200945471 -41718882 + AT_rich Low_complexity Low_complexity 1 25 0 379 266 101 51 chr1 200945832 200945990 -41718363 - MIR SINE MIR -31 231 66 225 0 0 0 chr1 200947331 200947356 -41716997 + (CAGCT)n Simple_repeat Simple_repeat 2 26 0 2377 107 0 0 chr1 200947441 200947751 -41716602 + AluSg SINE Alu 1 310 0 297 189 288 27 chr1 200947859 200947970 -41716383 - MIR3 SINE MIR -11 197 58 1017 226 5 0 chr1 200949169 200949377 -41714976 - MER3 DNA MER1_type 0 209 1 288 77 0 0 chr1 200950983 200951022 -41713331 + (A)n Simple_repeat Simple_repeat 1 39 0 2870 13 0 6 chr1 200951992 200952307 -41712046 - AluYb8 SINE Alu -5 313 1 349 248 220 40 chr1 200953147 200953346 -41711007 - MIR SINE MIR -32 230 4 187 207 24 122 chr1 200953680 200953713 -41710640 + MIR SINE MIR 119 154 -108 2516 87 0 0 chr1 200953713 200954022 -41710331 + AluSq SINE Alu 1 309 -4 187 207 24 122 chr1 200954022 200954070 -41710283 + MIR SINE MIR 154 192 -70 656 350 54 0 chr1 200954840 200955080 -41709273 - MIR SINE MIR -1 261 9 589 253 99 90 chr1 200955572 200955805 -41708548 + MIR SINE MIR 22 256 -6 1086 199 43 9 chr1 200955813 200956024 -41708329 - MER20 DNA MER1_type 0 219 2 916 276 15 30 chr1 200956780 200957045 -41707308 - MIR SINE MIR 0 262 2 279 275 66 48 chr1 200957055 200957222 -41707131 - L2 LINE L2 -198 3074 2905 225 0 0 0 chr1 200957594 200957619 -41706734 + (TG)n Simple_repeat Simple_repeat 1 25 0 2444 115 0 0 chr1 200957890 200958203 -41706150 + AluSp SINE Alu 1 313 0 278 222 241 21 chr1 200958673 200958816 -41705537 + MIR SINE MIR 25 196 -66 486 184 0 0 chr1 200959032 200959108 -41705245 + AluJ/FLAM SINE Alu 2 77 -235 181 56 28 28 chr1 200959256 200959292 -41705061 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1893 141 0 7 chr1 200959301 200959571 -41704782 - AluSx SINE Alu -44 268 1 396 246 119 8 chr1 200960445 200960579 -41703774 + MIR SINE MIR 53 201 -61 208 294 22 65 chr1 200960585 200960677 -41703676 - L2 LINE L2 -16 3297 3210 2361 91 0 0 chr1 200960901 200961230 -41703123 - AluSx SINE Alu 0 329 1 435 237 58 29 chr1 200962287 200962453 -41701900 + MIR3 SINE MIR 69 242 -20 449 249 19 136 chr1 200962610 200962823 -41701530 - MER91A DNA MER1_type -8 188 1 189 0 0 0 chr1 200963908 200963929 -41700424 + (T)n Simple_repeat Simple_repeat 1 21 0 303 262 131 19 chr1 200965012 200965119 -41699234 + MIR SINE MIR 88 206 -56 2257 104 0 7 chr1 200965336 200965635 -41698718 + AluSc SINE Alu 1 297 -12 317 323 137 0 chr1 200965645 200965769 -41698584 + MIR3 SINE MIR 35 175 -33 665 189 13 46 chr1 200966483 200966636 -41697717 - MER63 DNA MER1_type -62 774 1 511 323 19 6 chr1 200966766 200966927 -41697426 + MIR3 SINE MIR 42 204 -4 613 265 27 29 chr1 200967251 200967448 -41696905 + MIR SINE MIR 5 199 -59 196 293 24 85 chr1 200968033 200968115 -41696238 - MIR3 SINE MIR -12 196 120 784 292 49 0 chr1 200968166 200968392 -41695961 - MIR SINE MIR -12 250 14 338 216 216 0 chr1 200968659 200968761 -41695592 - MIR SINE MIR -36 226 103 206 198 12 139 chr1 200969205 200969291 -41695062 - MIR3 SINE MIR 0 208 134 474 222 19 28 chr1 200969320 200969428 -41694925 + MIR SINE MIR 89 195 -67 251 327 27 20 chr1 200969576 200969726 -41694627 + MIR SINE MIR 110 260 -2 207 309 21 32 chr1 200969748 200969842 -41694511 + L2 LINE L2 3221 3313 0 220 328 0 15 chr1 200969842 200969909 -41694444 - MIR3 SINE MIR -140 68 3 436 290 0 0 chr1 200970690 200970790 -41693563 + MER5A DNA MER1_type 10 109 -80 458 281 38 32 chr1 200970852 200971037 -41693316 - MER5A DNA MER1_type -3 186 1 184 156 0 44 chr1 200971085 200971130 -41693223 + L2 LINE L2 3271 3313 0 2095 222 79 44 chr1 200971439 200972011 -41692342 + MLT1E LTR MaLR 1 592 -1 198 71 0 0 chr1 200973590 200973618 -41690735 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 538 284 67 10 chr1 200973820 200974014 -41690339 - MIR SINE MIR -50 212 8 246 296 82 44 chr1 200974046 200974252 -41690101 + MARNA DNA Mariner 266 479 -107 417 261 72 0 chr1 200974929 200975040 -41689313 + MIR3 SINE MIR 41 159 -49 23 54 0 0 chr1 200975117 200975154 -41689199 + AT_rich Low_complexity Low_complexity 1 37 0 2974 145 29 15 chr1 200975240 200975758 -41688595 + Tigger7 DNA MER2_type 2 526 -1961 572 281 186 9 chr1 200975860 200976081 -41688272 + MIR SINE MIR 3 262 0 686 105 26 9 chr1 200976718 200976832 -41687521 + Tigger7 DNA MER2_type 407 522 -1965 501 17 0 0 chr1 200976834 200976892 -41687461 + (TA)n Simple_repeat Simple_repeat 1 58 0 366 152 0 101 chr1 200976894 200976973 -41687380 + Tigger7 DNA MER2_type 2411 2481 -6 337 276 24 17 chr1 200977709 200977844 -41686509 - MER20B DNA MER1_type -4 215 77 282 336 9 19 chr1 200980422 200980529 -41683824 + MIR SINE MIR 16 121 -141 2020 154 3 0 chr1 200980567 200980865 -41683488 - AluJb SINE Alu 0 312 14 347 324 80 42 chr1 200981332 200981570 -41682783 + MIR SINE MIR 16 262 0 234 274 36 12 chr1 200981993 200982077 -41682276 - L2 LINE L2 -221 3051 2966 184 368 26 13 chr1 200982192 200982268 -41682085 - MIR SINE MIR -184 78 2 183 80 0 0 chr1 200982282 200982307 -41682046 + (TC)n Simple_repeat Simple_repeat 1 25 0 399 312 22 43 chr1 200982307 200982356 -41681997 + L2 LINE L2 3137 3186 -86 1807 155 61 0 chr1 200982356 200982633 -41681720 - AluJb SINE Alu -18 294 1 399 312 22 43 chr1 200982633 200982721 -41681632 + L2 LINE L2 3186 3271 -1 201 225 34 0 chr1 200982722 200982811 -41681542 + (TGGA)n Simple_repeat Simple_repeat 2 93 0 465 239 11 10 chr1 200982845 200983129 -41681224 + (TGGA)n Simple_repeat Simple_repeat 1 284 0 1141 257 82 48 chr1 200983379 200983871 -41680482 + L2 LINE L2 2787 3307 -6 21 0 0 0 chr1 200985558 200985579 -41678774 + AT_rich Low_complexity Low_complexity 1 21 0 224 295 48 38 chr1 200985623 200985728 -41678625 - MIR3 SINE MIR -90 118 13 * 232 354 146 23 chr1 200985716 200985976 -41678377 - L3b LINE CR1 -93 1490 1199 376 301 20 20 chr1 200987627 200987765 -41676588 + MIR SINE MIR 117 257 -5 2066 124 0 35 chr1 200987765 200988079 -41676274 - AluSg SINE Alu -7 303 1 276 312 46 81 chr1 200988424 200988597 -41675756 + MIR3 SINE MIR 15 181 -27 234 105 0 0 chr1 200988704 200988742 -41675611 + (T)n Simple_repeat Simple_repeat 1 38 0 640 253 75 43 chr1 200989140 200989393 -41674960 + MIR SINE MIR 2 262 0 261 287 47 87 chr1 200990532 200990682 -41673671 - MIR3 SINE MIR -26 182 39 208 308 84 19 chr1 200990968 200991075 -41673278 + L3b LINE CR1 1329 1442 -141 208 153 34 34 chr1 200991555 200991614 -41672739 + GA-rich Low_complexity Low_complexity 6 64 0 1644 160 4 142 chr1 200992418 200992518 -41671835 + MLT1B LTR MaLR 2 114 -276 1592 163 16 48 chr1 200992518 200992831 -41671522 - AluJb SINE Alu -9 303 1 1644 160 4 142 chr1 200992831 200993181 -41671172 + MLT1B LTR MaLR 114 390 0 286 375 59 7 chr1 200994478 200994630 -41669723 - MIR SINE MIR -4 258 99 381 168 126 25 chr1 200995099 200995218 -41669135 + L1ME4a LINE L1 5765 5895 -226 205 353 47 40 chr1 200996484 200996634 -41667719 + L2 LINE L2 3098 3248 -24 647 236 81 33 chr1 200997114 200997352 -41667001 + MIR SINE MIR 1 262 0 206 238 0 0 chr1 200997838 200997880 -41666473 + CT-rich Low_complexity Low_complexity 3 44 0 252 318 62 51 chr1 200998866 200999042 -41665311 - MIR SINE MIR -46 216 39 369 356 43 0 chr1 201000166 201000329 -41664024 - L3 LINE CR1 -17 1560 1391 442 337 43 0 chr1 201000968 201001131 -41663222 - L3 LINE CR1 -17 1560 1391 185 302 0 0 chr1 201002208 201002261 -41662092 + MIR SINE MIR 76 128 -80 185 250 0 42 chr1 201003498 201003546 -41660807 - MIR SINE MIR -102 160 115 212 346 39 31 chr1 201005856 201005986 -41658367 + L2 LINE L2 3142 3272 0 21 57 0 0 chr1 201007155 201007190 -41657163 + AT_rich Low_complexity Low_complexity 1 35 0 312 27 0 0 chr1 201012320 201012357 -41651996 + (CGG)n Simple_repeat Simple_repeat 3 39 0 26 50 0 0 chr1 201012431 201012471 -41651882 + GC_rich Low_complexity Low_complexity 1 40 0 241 270 0 40 chr1 201013544 201013618 -41650735 + GA-rich Low_complexity Low_complexity 2 72 0 464 250 0 0 chr1 201013709 201013813 -41650540 - L3 LINE CR1 -187 1390 1287 23 0 0 0 chr1 201013907 201013930 -41650423 + AT_rich Low_complexity Low_complexity 1 23 0 244 282 43 31 chr1 201014579 201014699 -41649654 + MIR SINE MIR 93 216 -46 252 86 0 0 chr1 201016829 201016864 -41647489 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 235 173 95 43 chr1 201017343 201017412 -41646941 + MIR SINE MIR 90 167 -65 964 184 0 0 chr1 201018346 201018504 -41645849 - FRAM SINE Alu -22 154 1 389 291 9 9 chr1 201018507 201018617 -41645736 - MIR SINE MIR -118 144 35 495 268 16 8 chr1 201020180 201020307 -41644046 + MIR3 SINE MIR 34 161 -47 225 0 0 0 chr1 201020397 201020422 -41643931 + (A)n Simple_repeat Simple_repeat 1 25 0 221 354 13 63 chr1 201021686 201021844 -41642509 + L2 LINE L2 2896 3045 -227 453 278 21 42 chr1 201021981 201022125 -41642228 - MIR3 SINE MIR -63 145 5 273 151 0 19 chr1 201022201 201022254 -41642099 - Alu SINE Alu -1 301 250 591 263 132 5 chr1 201023043 201023233 -41641120 + MIR SINE MIR 17 230 -32 248 288 138 0 chr1 201023270 201023350 -41641003 + MIR SINE MIR 58 148 -60 371 302 20 60 chr1 201023584 201023612 -41640741 - MIR SINE MIR -36 172 144 2274 108 0 19 chr1 201023612 201023927 -41640426 - AluSc SINE Alu 0 309 1 371 302 20 60 chr1 201023927 201024047 -41640306 - MIR SINE MIR -64 144 28 207 316 18 0 chr1 201024686 201024743 -41639610 - MIR3 SINE MIR -6 202 145 1550 214 68 23 chr1 201024744 201025004 -41639349 - MLT1C LTR MaLR -1 466 176 285 29 0 0 chr1 201025004 201025038 -41639315 + (TG)n Simple_repeat Simple_repeat 2 35 0 1550 214 68 23 chr1 201025038 201025217 -41639136 - MLT1C LTR MaLR -291 176 7 252 340 10 0 chr1 201025221 201025318 -41639035 - L3 LINE CR1 -59 1518 1421 270 136 0 0 chr1 201025814 201025858 -41638495 + (TG)n Simple_repeat Simple_repeat 1 44 0 214 258 266 23 chr1 201026632 201026760 -41637593 + MIR3 SINE MIR 35 193 -15 211 277 99 40 chr1 201026860 201026961 -41637392 + MIR SINE MIR 12 118 -144 233 298 90 90 chr1 201027185 201027363 -41636990 - MER5B DNA MER1_type 0 178 1 340 360 79 38 chr1 201027806 201028098 -41636255 + L1MC4a LINE L1 6063 6366 -1442 1382 250 51 55 chr1 201028192 201028257 -41636096 + L1MC5 LINE L1 6422 6486 -1475 2110 139 7 0 chr1 201028257 201028567 -41635786 - AluSx SINE Alu 0 312 1 1382 250 51 55 chr1 201028567 201029264 -41635089 + L1MC5 LINE L1 6486 7188 -773 817 166 21 42 chr1 201029266 201029378 -41634975 + MER53 DNA DNA 1 109 -80 8346 118 15 18 chr1 201029378 201030680 -41633673 - HSMAR2 DNA Mariner -2 1300 4 817 166 21 42 chr1 201030680 201030760 -41633593 + MER53 DNA DNA 109 189 0 657 201 77 98 chr1 201030763 201031037 -41633316 + L1MC5 LINE L1 7186 7453 -508 216 0 0 0 chr1 201031048 201031072 -41633281 + (GA)n Simple_repeat Simple_repeat 1 24 0 380 201 83 108 chr1 201031085 201031373 -41632980 + L1MC5 LINE L1 7629 7909 -52 810 273 9 44 chr1 201031435 201031662 -41632691 - MIR SINE MIR -36 226 8 313 282 0 0 chr1 201031805 201031883 -41632470 + L3 LINE CR1 1498 1575 -2 23 0 0 0 chr1 201033539 201033562 -41630791 + AT_rich Low_complexity Low_complexity 1 23 0 180 308 0 0 chr1 201033661 201033713 -41630640 + MIR SINE MIR 48 99 -163 702 0 0 0 chr1 201033868 201033946 -41630407 + (TTCCC)n Simple_repeat Simple_repeat 2 79 0 252 167 0 0 chr1 201033946 201033994 -41630359 + CT-rich Low_complexity Low_complexity 1 48 0 2150 134 16 0 chr1 201033994 201034299 -41630054 - AluSx SINE Alu -2 310 1 360 270 27 113 chr1 201035187 201035372 -41628981 - MIR3 SINE MIR -11 197 28 200 248 198 25 chr1 201035502 201035583 -41628770 - MIR SINE MIR -2 260 194 252 0 0 0 chr1 201035583 201035611 -41628742 + (CAG)n Simple_repeat Simple_repeat 1 28 0 200 248 198 25 chr1 201035611 201035686 -41628667 - MIR SINE MIR -68 194 77 369 0 0 0 chr1 201036499 201036540 -41627813 + (TG)n Simple_repeat Simple_repeat 1 41 0 183 156 0 0 chr1 201036562 201036594 -41627759 + GA-rich Low_complexity Low_complexity 1 32 0 216 67 0 0 chr1 201036735 201036765 -41627588 + (TG)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr1 201037582 201037604 -41626749 + (CA)n Simple_repeat Simple_repeat 1 22 0 189 253 172 11 chr1 201037926 201038013 -41626340 - L3b LINE CR1 -178 1405 1305 255 315 141 0 chr1 201039583 201039732 -41624621 - L2 LINE L2 -19 3294 3125 1055 153 39 83 chr1 201039804 201040033 -41624320 + MER20 DNA MER1_type 1 219 0 396 0 0 0 chr1 201040765 201040809 -41623544 + (TC)n Simple_repeat Simple_repeat 1 44 0 315 0 0 0 chr1 201040809 201040844 -41623509 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr1 201040843 201040865 -41623488 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 1917 158 0 7 chr1 201042962 201043259 -41621094 - AluSx SINE Alu -17 295 1 203 323 161 0 chr1 201043290 201043383 -41620970 + L2 LINE L2 3147 3254 -18 206 208 21 135 chr1 201044015 201044111 -41620242 - L2 LINE L2 -2 3270 3186 392 348 67 5 chr1 201044509 201044756 -41619597 + MIR SINE MIR 3 262 0 836 271 76 90 chr1 201045857 201046358 -41617995 - L2 LINE L2 -2 3311 2818 432 283 110 84 chr1 201046626 201046784 -41617569 - HAL1 LINE L1 -738 1769 1617 2189 125 0 0 chr1 201046784 201047080 -41617273 - AluSx SINE Alu -11 301 6 432 283 110 84 chr1 201047080 201047465 -41616888 - HAL1 LINE L1 -890 1617 1244 645 207 33 0 chr1 201047465 201047586 -41616767 - FLAM_C SINE Alu -7 126 2 432 283 110 84 chr1 201047586 201047950 -41616403 - HAL1 LINE L1 -1263 1244 837 2031 150 64 22 chr1 201048013 201048360 -41615993 + THE1C LTR MaLR 1 365 -10 2239 116 0 0 chr1 201048360 201048662 -41615691 + AluSg SINE Alu 1 302 -8 2031 150 64 22 chr1 201048662 201048674 -41615679 + THE1C LTR MaLR 365 375 0 1978 97 0 34 chr1 201048966 201049265 -41615088 + AluSq SINE Alu 25 314 0 2245 252 62 30 chr1 201049632 201050373 -41613980 - L1ME3 LINE L1 -6 6156 5392 2284 79 48 0 chr1 201050375 201050665 -41613688 - AluSx SINE Alu -8 304 1 184 304 116 0 chr1 201050756 201050825 -41613528 - MIR SINE MIR -184 78 2 2111 118 3 16 chr1 201051037 201051341 -41613012 + AluSx SINE Alu 1 300 -12 1312 164 31 23 chr1 201051349 201051605 -41612748 + MLT1B LTR MaLR 133 390 0 531 246 57 0 chr1 201051615 201051643 -41612710 - MIR SINE MIR -133 129 104 2466 83 0 3 chr1 201051643 201051945 -41612408 - AluSc SINE Alu -8 301 1 531 246 57 0 chr1 201051945 201052038 -41612315 - MIR SINE MIR -158 104 1 1354 166 59 47 chr1 201052058 201052378 -41611975 - MER33 DNA MER1_type 0 324 1 353 272 46 81 chr1 201052461 201052574 -41611779 + L2 LINE L2 2809 2924 -348 2303 107 3 0 chr1 201052574 201052882 -41611471 - AluSx SINE Alu -3 309 1 353 272 46 81 chr1 201052882 201053051 -41611302 + L2 LINE L2 2924 3081 -191 6365 92 15 53 chr1 201053577 201053591 -41610762 + L1PA16 LINE L1 4693 4706 -1460 1466 156 80 42 chr1 201053591 201053879 -41610474 + AluJo SINE Alu 1 299 -13 6365 92 15 53 chr1 201053879 201055373 -41608980 + L1PA16 LINE L1 4706 6166 0 2248 88 14 0 chr1 201055381 201055677 -41608676 + AluSp SINE Alu 1 300 -13 475 313 71 22 chr1 201056377 201056601 -41607752 - MIR SINE MIR -17 245 11 1827 173 3 19 chr1 201056817 201057130 -41607223 - AluJo SINE Alu -4 308 1 404 271 13 60 chr1 201057173 201057324 -41607029 - MER117 DNA MER1_type 0 197 54 657 71 12 0 chr1 201057969 201058053 -41606300 + AluSg/x SINE Alu 210 294 -15 1157 174 0 19 chr1 201058055 201058267 -41606086 - AluJo SINE Alu -83 229 22 188 300 33 0 chr1 201059312 201059372 -41604981 + L2 LINE L2 2725 2786 -528 1967 167 0 0 chr1 201059390 201059701 -41604652 - AluJb SINE Alu -1 311 1 297 319 81 113 chr1 201059849 201059967 -41604386 + L2 LINE L2 2939 3059 -213 1851 168 0 3 chr1 201059967 201060264 -41604089 - AluJb SINE Alu -16 296 1 297 319 81 113 chr1 201060264 201060490 -41603863 + L2 LINE L2 3059 3272 0 358 279 45 63 chr1 201061044 201061266 -41603087 + L1M4 LINE L1 2701 2918 -3228 2201 125 3 0 chr1 201062672 201062983 -41601370 - AluSx SINE Alu 0 312 1 1018 203 0 48 chr1 201062986 201063213 -41601140 - L1M4 LINE L1 -1741 4405 4190 189 0 0 0 chr1 201063225 201063246 -41601107 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2121 129 0 0 chr1 201063248 201063534 -41600819 - AluSx SINE Alu -26 286 1 447 91 0 15 chr1 201064497 201064563 -41599790 + AluSp/q SINE Alu 241 305 -8 665 211 0 16 chr1 201064755 201064878 -41599475 - FLAM_A SINE Alu -12 121 1 612 139 123 57 chr1 201065208 201065330 -41599023 - FLAM_C SINE Alu -12 131 2 2218 113 13 0 chr1 201065578 201065879 -41598474 - AluSx SINE Alu -7 305 1 200 111 0 0 chr1 201065987 201066014 -41598339 - L2 LINE L2 -14 3258 3232 200 233 0 0 chr1 201066155 201066198 -41598155 + T-rich Low_complexity Low_complexity 1 43 0 1947 134 23 7 chr1 201066556 201066863 -41597490 + AluSx SINE Alu 1 312 0 2409 103 0 0 chr1 201067532 201067844 -41596509 + AluSx SINE Alu 1 312 0 318 322 91 25 chr1 201068830 201069257 -41595096 + L1M4 LINE L1 3702 4165 -1981 450 162 50 81 chr1 201069400 201069499 -41594854 + MLT1D LTR MaLR 1 96 -409 440 240 109 14 chr1 201069723 201069943 -41594410 - L1ME3A LINE L1 -121 6049 5779 325 228 132 9 chr1 201069913 201070027 -41594326 - L1M4 LINE L1 -3705 2441 2314 * 1209 176 117 41 chr1 201070235 201070525 -41593828 + AluJo SINE Alu 1 312 0 189 224 118 53 chr1 201071191 201071267 -41593086 + L2 LINE L2 3191 3271 -1 1947 179 34 21 chr1 201071271 201071656 -41592697 + MLT1B LTR MaLR 1 390 0 294 143 20 0 chr1 201071849 201071898 -41592455 - Alu SINE Alu -252 50 1 1812 93 4 48 chr1 201072187 201072456 -41591897 + AluSc SINE Alu 1 257 -52 2234 101 0 3 chr1 201072456 201072752 -41591601 + AluSc SINE Alu 5 300 -9 2305 84 14 0 chr1 201073587 201073883 -41590470 + AluSx SINE Alu 1 300 -12 885 127 51 19 chr1 201073910 201074068 -41590285 + L1MB3 LINE L1 6021 6183 0 449 195 84 48 chr1 201074090 201074222 -41590131 - L1ME1 LINE L1 -2 6182 6045 469 333 26 21 chr1 201074812 201075046 -41589307 - L2 LINE L2 -1319 1995 1761 579 316 25 28 chr1 201075098 201075383 -41588970 - MARNA DNA Mariner -251 335 52 2249 104 0 0 chr1 201075501 201075798 -41588555 - AluSx SINE Alu -15 297 1 320 223 123 39 chr1 201075892 201076022 -41588331 - MER113 DNA MER1_type? -380 141 1 575 253 20 20 chr1 201076059 201076205 -41588148 + MIR SINE MIR 46 191 -71 1308 142 40 20 chr1 201077081 201077328 -41587025 + AluJo SINE Alu 49 300 -12 1638 159 15 0 chr1 201077599 201077863 -41586490 + AluJb SINE Alu 1 268 -44 281 218 126 0 chr1 201078042 201078129 -41586224 - MLT1L LTR MaLR -17 598 501 271 307 156 34 chr1 201078181 201078360 -41585993 - MLT1J LTR MaLR -196 315 115 1479 165 28 0 chr1 201078938 201079186 -41585167 - L1PB4 LINE L1 -10 6146 5892 436 158 89 0 chr1 201079263 201079364 -41584989 - L1MDa LINE L1 -4800 1740 1631 500 243 48 29 chr1 201079425 201079631 -41584722 - L1PA16 LINE L1 -138 6028 5819 2104 123 0 3 chr1 201079812 201080113 -41584240 - AluY SINE Alu -11 300 1 295 151 0 0 chr1 201080157 201080210 -41584143 - L1MA3 LINE L1 0 6305 6253 848 171 8 0 chr1 201080210 201080339 -41584014 - FRAM SINE Alu -10 166 37 475 319 12 19 chr1 201080346 201080506 -41583847 - MIR3 SINE MIR -30 178 20 2251 118 0 9 chr1 201080745 201081060 -41583293 - AluSx SINE Alu 0 312 1 1153 161 164 62 chr1 201081111 201081342 -41583011 - AluJo SINE Alu 0 302 37 1489 150 0 70 chr1 201081342 201081629 -41582724 + AluJb SINE Alu 34 300 -12 1153 161 164 62 chr1 201081629 201081671 -41582682 - AluJo SINE Alu -265 37 1 1563 178 60 0 chr1 201081717 201081986 -41582367 - LTR24 LTR ERV1 0 467 183 1975 248 91 16 chr1 201083486 201083990 -41580363 + MLT1F LTR MaLR 1 542 0 253 314 154 6 chr1 201084052 201084208 -41580145 + MIR SINE MIR 1 179 -83 451 210 51 7 chr1 201084230 201084368 -41579985 + L1MB4 LINE L1 5964 6107 -73 287 313 84 0 chr1 201084918 201085001 -41579352 + L2 LINE L2 3136 3225 -47 901 264 39 24 chr1 201085222 201085476 -41578877 - MIR SINE MIR -2 260 3 188 286 32 0 chr1 201085573 201085636 -41578717 - L2 LINE L2 -291 2981 2917 504 111 0 0 chr1 201085764 201085861 -41578492 + AluJ/FRAM SINE Alu 221 317 0 1776 134 36 46 chr1 201085915 201086220 -41578133 + AluJo SINE Alu 1 302 -10 534 103 0 0 chr1 201086396 201086474 -41577879 + (GAAA)n Simple_repeat Simple_repeat 1 78 0 210 37 0 0 chr1 201086713 201086740 -41577613 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2020 123 3 32 chr1 201087073 201087381 -41576972 - AluSx SINE Alu -13 299 1 837 286 90 33 chr1 201087532 201088143 -41576210 + HAL1b LINE L1 1 646 -702 272 344 26 7 chr1 201088144 201088298 -41576055 + HAL1b LINE L1 668 824 -524 1518 154 46 46 chr1 201088405 201088717 -41575636 + AluJo SINE Alu 1 312 0 1655 193 0 3 chr1 201088729 201089041 -41575312 + AluJo SINE Alu 1 311 0 231 271 30 23 chr1 201089251 201089384 -41574969 + L1 LINE L1 2309 2442 -3704 2320 85 27 0 chr1 201089443 201089737 -41574616 + AluSx SINE Alu 1 302 -10 822 146 0 29 chr1 201090273 201090410 -41573943 - FRAM SINE Alu -4 172 40 342 0 0 0 chr1 201091348 201091386 -41572967 + (CA)n Simple_repeat Simple_repeat 1 38 0 581 183 0 0 chr1 201092418 201092511 -41571842 + AluSg/x SINE Alu 203 295 -15 35 24 0 0 chr1 201092844 201092886 -41571467 + AT_rich Low_complexity Low_complexity 1 42 0 2125 129 6 3 chr1 201093006 201093317 -41571036 + AluJb SINE Alu 1 312 0 1077 140 18 12 chr1 201093763 201093927 -41570426 - AluJb SINE Alu -16 296 132 237 83 0 0 chr1 201094390 201094426 -41569927 + (CA)n Simple_repeat Simple_repeat 2 37 0 935 124 5 124 chr1 201095031 201095224 -41569129 - FAM SINE Alu -5 170 1 207 261 0 0 chr1 201097367 201097413 -41566940 + L2 LINE L2 3219 3264 -8 22 0 0 0 chr1 201097844 201097866 -41566487 + AT_rich Low_complexity Low_complexity 1 22 0 532 280 64 76 chr1 201098100 201098507 -41565846 + L2 LINE L2 2260 2661 -653 23 0 0 0 chr1 201099673 201099696 -41564657 + AT_rich Low_complexity Low_complexity 1 23 0 396 0 0 0 chr1 201099931 201099975 -41564378 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr1 201100039 201100065 -41564288 + AT_rich Low_complexity Low_complexity 1 26 0 1958 156 3 3 chr1 201100308 201100609 -41563744 + AluSx SINE Alu 1 301 -11 491 254 33 8 chr1 201103300 201103422 -41560931 + L2 LINE L2 2834 2958 -355 1884 165 13 0 chr1 201103592 201103895 -41560458 - AluJb SINE Alu -5 307 1 1841 104 4 12 chr1 201104204 201104463 -41559890 + THE1C-int LTR MaLR 1324 1580 0 1861 127 68 25 chr1 201104463 201104818 -41559535 + THE1C LTR MaLR 1 370 -5 2327 87 3 7 chr1 201106643 201106953 -41557400 + AluSg1 SINE Alu 1 309 0 230 250 27 54 chr1 201108403 201108515 -41555838 - LTR16C LTR ERVL -58 433 325 2111 120 0 13 chr1 201108610 201108911 -41555442 + AluSg SINE Alu 1 297 -13 294 359 109 0 chr1 201108918 201109046 -41555307 - MIR SINE MIR -11 251 110 297 0 0 0 chr1 201110374 201110407 -41553946 + (TG)n Simple_repeat Simple_repeat 1 33 0 1602 295 61 116 chr1 201110855 201111112 -41553241 + L3 LINE CR1 152 422 -1155 2000 97 10 45 chr1 201111112 201111400 -41552953 - AluSg SINE Alu -32 278 1 1602 295 61 116 chr1 201111400 201111991 -41552362 + L3 LINE CR1 422 1044 -533 411 36 0 18 chr1 201111991 201112046 -41552307 + MADE1 DNA Mariner 1 54 -26 1602 295 61 116 chr1 201112046 201112099 -41552254 + L3 LINE CR1 1044 1098 -479 183 80 0 0 chr1 201112099 201112124 -41552229 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 1602 295 61 116 chr1 201112124 201112664 -41551689 + L3 LINE CR1 1098 1567 -10 380 290 53 15 chr1 201113597 201113728 -41550625 - MIR SINE MIR -90 172 37 317 253 182 13 chr1 201114573 201114727 -41549626 - MER5A DNA MER1_type -1 188 9 185 351 92 15 chr1 201114765 201114896 -41549457 - L3b LINE CR1 -170 1413 1273 255 261 45 10 chr1 201115887 201115991 -41548362 + MIR SINE MIR 45 156 -52 549 189 189 20 chr1 201116141 201116294 -41548059 + MER5A DNA MER1_type 9 187 -2 658 343 72 28 chr1 201116497 201116928 -41547425 - L2 LINE L2 0 3313 2864 496 261 60 33 chr1 201117019 201117203 -41547150 - L2 LINE L2 -610 2704 2516 258 91 0 0 chr1 201118397 201118430 -41545923 + MLT1B LTR MaLR 1 33 -357 303 336 35 79 chr1 201118461 201118480 -41545873 + L2 LINE L2 2987 3005 -267 1958 204 46 0 chr1 201118480 201118853 -41545500 + MLT1B LTR MaLR 1 390 0 303 336 35 79 chr1 201118853 201119062 -41545291 + L2 LINE L2 3005 3205 -67 357 181 56 14 chr1 201119104 201119176 -41545177 - MLT1J2 LTR MaLR -31 419 345 805 250 38 28 chr1 201119238 201119450 -41544903 - MLT1J2 LTR MaLR -216 234 21 270 290 0 0 chr1 201119468 201119530 -41544823 + L2 LINE L2 3237 3298 -15 197 317 134 0 chr1 201119814 201119896 -41544457 + L2 LINE L2 3141 3233 -39 543 300 87 17 chr1 201119913 201120143 -41544210 - MIR SINE MIR -6 256 11 234 217 33 33 chr1 201120290 201120350 -41544003 + L2 LINE L2 3200 3259 -13 22 56 0 0 chr1 201121786 201121822 -41542531 + AT_rich Low_complexity Low_complexity 1 36 0 2295 100 3 3 chr1 201122038 201122338 -41542015 - AluSq SINE Alu -13 300 1 434 332 122 25 chr1 201125143 201125381 -41538972 + L2 LINE L2 2603 2863 -451 287 150 17 0 chr1 201125819 201125879 -41538474 + CT-rich Low_complexity Low_complexity 4 64 0 261 0 0 0 chr1 201125927 201125956 -41538397 + (TTG)n Simple_repeat Simple_repeat 2 30 0 405 58 0 0 chr1 201126101 201126153 -41538200 + (CA)n Simple_repeat Simple_repeat 1 52 0 209 128 26 0 chr1 201126179 201126218 -41538135 + (TA)n Simple_repeat Simple_repeat 2 41 0 222 192 0 0 chr1 201126433 201126485 -41537868 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 240 245 19 0 chr1 201126824 201126877 -41537476 + MLT1I LTR MaLR 231 284 -125 390 235 12 12 chr1 201126995 201127080 -41537273 + MLT1I LTR MaLR 325 409 0 216 214 0 0 chr1 201127181 201127237 -41537116 + (TG)n Simple_repeat Simple_repeat 1 56 0 432 55 0 0 chr1 201127237 201127292 -41537061 + (TA)n Simple_repeat Simple_repeat 2 56 0 372 377 0 8 chr1 201128701 201128831 -41535522 - MER5A DNA MER1_type -6 183 55 529 270 61 12 chr1 201129461 201129624 -41534729 - MIR SINE MIR -43 219 49 442 269 88 6 chr1 201130941 201131101 -41533252 + MIR SINE MIR 45 217 -45 181 337 112 10 chr1 201131231 201131329 -41533024 + MIR SINE MIR 29 136 -72 522 288 108 33 chr1 201131474 201131686 -41532667 - MIR SINE MIR -6 256 29 289 303 61 38 chr1 201131718 201131850 -41532503 - MIR3 SINE MIR -63 145 11 266 227 0 15 chr1 201131985 201132051 -41532302 + MIR3 SINE MIR 141 205 -3 300 302 56 16 chr1 201132115 201132241 -41532112 - MIR SINE MIR -79 183 53 1848 165 3 13 chr1 201134457 201134760 -41529593 - AluJo SINE Alu -12 300 1 1154 113 16 16 chr1 201136746 201136931 -41527422 + MER53 DNA DNA 5 189 0 242 254 15 15 chr1 201137190 201137257 -41527096 - L2 LINE L2 0 3272 3206 788 281 83 16 chr1 201137795 201138037 -41526316 + MIR SINE MIR 5 262 0 1950 169 64 48 chr1 201139341 201139556 -41524797 - MSTC LTR MaLR 0 428 218 2116 121 0 38 chr1 201139556 201139869 -41524484 - AluSg SINE Alu -9 301 1 1950 169 64 48 chr1 201139869 201140073 -41524280 - MSTC LTR MaLR -210 218 2 246 62 0 0 chr1 201140742 201140774 -41523579 + (TG)n Simple_repeat Simple_repeat 1 32 0 185 159 23 0 chr1 201142459 201142503 -41521850 + CT-rich Low_complexity Low_complexity 4 48 0 448 158 13 0 chr1 201144679 201144755 -41519598 - L3b LINE CR1 -249 1334 1258 224 209 0 15 chr1 201145526 201145593 -41518760 + CT-rich Low_complexity Low_complexity 2 67 0 475 283 43 7 chr1 201145668 201145806 -41518547 + MIR3 SINE MIR 51 193 -15 549 218 109 7 chr1 201147825 201147865 -41516488 - MIR SINE MIR -17 245 210 7655 120 40 17 chr1 201147865 201148794 -41515559 + Tigger3b DNA MER2_type 1 965 -2063 2486 84 0 0 chr1 201148794 201149102 -41515251 - AluY SINE Alu -3 308 1 7655 120 40 17 chr1 201149102 201149376 -41514977 + Tigger3b DNA MER2_type 965 1231 0 549 218 109 7 chr1 201149376 201149482 -41514871 - MIR SINE MIR -52 210 84 585 278 69 18 chr1 201149569 201149776 -41514577 + MIR SINE MIR 2 219 -43 966 262 30 33 chr1 201149939 201150015 -41514338 - MLT1I LTR MaLR -24 385 310 2006 181 22 6 chr1 201150015 201150374 -41513979 - MLT1A1 LTR MaLR 0 365 1 966 262 30 33 chr1 201150374 201150599 -41513754 - MLT1I LTR MaLR -99 310 85 3076 63 0 0 chr1 201151340 201151746 -41512607 + L1PA5 LINE L1 5787 6192 0 280 314 110 8 chr1 201152979 201153097 -41511256 - L2 LINE L2 -1 3271 3142 288 0 0 0 chr1 201153464 201153496 -41510857 + (TG)n Simple_repeat Simple_repeat 2 33 0 1489 208 20 96 chr1 201153985 201154393 -41509960 - MLT1E1 LTR MaLR 0 654 278 1223 119 97 0 chr1 201154398 201154583 -41509770 - MER30 DNA MER1_type 0 230 28 1148 79 110 0 chr1 201154567 201154731 -41509622 - MER30 DNA MER1_type -48 182 1 * 269 200 0 20 chr1 201154731 201154781 -41509572 - MLT1E1 LTR MaLR -385 269 221 * 474 233 0 0 chr1 201154770 201154860 -41509493 - MLT1E1 LTR MaLR -560 94 5 189 0 0 0 chr1 201155039 201155060 -41509293 + (T)n Simple_repeat Simple_repeat 1 21 0 488 285 21 65 chr1 201156393 201156579 -41507774 - MIR3 SINE MIR -6 202 25 2507 72 0 0 chr1 201156813 201157119 -41507234 - AluY SINE Alu -5 306 1 1500 238 54 58 chr1 201157475 201157724 -41506629 + MLT1H LTR MaLR 107 355 -194 1984 172 27 55 chr1 201157724 201158125 -41506228 + MLT1B LTR MaLR 1 390 0 1500 238 54 58 chr1 201158125 201158320 -41506033 + MLT1H LTR MaLR 355 549 0 446 284 16 8 chr1 201158930 201159057 -41505296 - L2 LINE L2 0 3313 3186 703 76 45 8 chr1 201159075 201159207 -41505146 + (TCTA)n Simple_repeat Simple_repeat 3 139 0 212 369 89 6 chr1 201159588 201159745 -41504608 + L2 LINE L2 1950 2119 -1195 315 381 68 15 chr1 201160133 201160398 -41503955 + L2 LINE L2 2577 2855 -459 2884 221 85 39 chr1 201160554 201160649 -41503704 + L1ME1 LINE L1 5202 5291 -875 4190 89 2 9 chr1 201160649 201161198 -41503155 + L1PA11 LINE L1 5628 6172 -2 2884 221 85 39 chr1 201161198 201161597 -41502756 + L1ME1 LINE L1 5291 5670 -496 2503 122 13 19 chr1 201161597 201161974 -41502379 + THE1C LTR MaLR 1 375 0 2884 221 85 39 chr1 201161974 201162074 -41502279 + L1ME1 LINE L1 5670 5764 -402 2208 116 0 3 chr1 201162074 201162376 -41501977 - AluSx SINE Alu -11 301 1 2884 221 85 39 chr1 201162376 201162690 -41501663 + L1ME1 LINE L1 5764 6162 -4 31 26 0 0 chr1 201162778 201162816 -41501537 + AT_rich Low_complexity Low_complexity 1 38 0 734 268 107 10 chr1 201162838 201163043 -41501310 + MIR SINE MIR 17 241 -21 446 241 71 30 chr1 201163316 201163452 -41500901 - MIR SINE MIR -69 193 55 644 149 0 0 chr1 201163452 201163546 -41500807 - FRAM SINE Alu -14 162 69 500 232 29 22 chr1 201163914 201164052 -41500301 - L1ME3A LINE L1 -5 6165 6027 695 274 20 25 chr1 201165579 201165780 -41498573 - MIR SINE MIR -16 246 47 239 310 217 15 chr1 201166201 201166404 -41497949 - MIR SINE MIR -6 256 13 636 309 82 5 chr1 201166932 201167139 -41497214 - MIR SINE MIR -13 249 27 575 270 20 0 chr1 201167743 201167891 -41496462 + MIR SINE MIR 56 206 -56 189 0 0 0 chr1 201167952 201167973 -41496380 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1019 200 0 0 chr1 201168049 201168209 -41496144 - FAM SINE Alu -15 160 1 367 361 116 48 chr1 201168408 201169269 -41495084 + L2 LINE L2 1715 2677 -637 2510 116 30 28 chr1 201169269 201169632 -41494721 - THE1B LTR MaLR 0 364 1 367 361 116 48 chr1 201169632 201169938 -41494415 + L2 LINE L2 2677 2961 -353 252 327 99 0 chr1 201170063 201170164 -41494189 + L2 LINE L2 3162 3272 0 243 262 23 0 chr1 201170237 201170321 -41494032 + MIR SINE MIR 84 142 -66 1701 169 4 4 chr1 201170523 201170827 -41493526 + AluJb SINE Alu 5 308 0 300 308 176 19 chr1 201170842 201171001 -41493352 - MIR SINE MIR -78 184 1 493 272 5 43 chr1 201171056 201171240 -41493113 - MER58C DNA MER1_type 0 215 39 1112 232 134 26 chr1 201172610 201173028 -41491325 + MLT1C LTR MaLR 5 467 0 2198 117 0 0 chr1 201173980 201174271 -41490082 - AluSg SINE Alu -19 291 1 688 266 122 21 chr1 201174362 201174599 -41489754 - MIR SINE MIR 0 262 2 200 111 28 0 chr1 201175521 201175557 -41488796 + (TG)n Simple_repeat Simple_repeat 2 38 0 226 258 16 16 chr1 201176415 201176477 -41487876 - L3 LINE CR1 -75 1502 1441 214 162 0 0 chr1 201176727 201176764 -41487589 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 2547 168 59 64 chr1 201177002 201177563 -41486790 + MER21B LTR ERV1 294 851 -12 836 172 0 8 chr1 201178020 201178154 -41486199 + AluJo SINE Alu 2 134 -178 869 258 84 70 chr1 201178162 201178592 -41485761 - MLT1J2 LTR MaLR -14 436 1 1172 269 68 45 chr1 201179616 201179888 -41484465 - L2 LINE L2 0 3313 3049 2416 95 3 0 chr1 201179888 201180192 -41484161 + AluSp SINE Alu 1 305 -8 1172 269 68 45 chr1 201180192 201180524 -41483829 - L2 LINE L2 -264 3049 2686 1222 208 14 0 chr1 201180680 201180901 -41483452 + MER58A DNA MER1_type 1 224 0 327 357 32 0 chr1 201182594 201182751 -41481602 - L2 LINE L2 -240 3032 2871 2026 234 6 53 chr1 201183091 201183614 -41480739 + MLT2B1 LTR ERVL 1 499 -21 2103 162 113 10 chr1 201183614 201184002 -41480351 - MSTA LTR MaLR 0 428 1 2026 234 6 53 chr1 201184002 201184024 -41480329 + MLT2B1 LTR ERVL 499 520 0 238 308 0 0 chr1 201184926 201184991 -41479362 + CT-rich Low_complexity Low_complexity 3 67 0 441 353 42 81 chr1 201185012 201185395 -41478958 - L2 LINE L2 -44 3228 2861 1807 91 11 40 chr1 201186560 201186725 -41477628 - L1MA2 LINE L1 0 6304 6136 185 0 0 39 chr1 201186725 201186751 -41477602 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1632 176 7 4 chr1 201186751 201187030 -41477323 - AluJb SINE Alu -32 280 1 1807 91 11 40 chr1 201187030 201187139 -41477214 - L1MA2 LINE L1 -166 6138 6037 2324 97 0 7 chr1 201187144 201187443 -41476910 - AluSq SINE Alu -16 297 1 1279 237 140 33 chr1 201187638 201188178 -41476175 - MLT1E3 LTR MaLR 0 624 14 552 289 114 39 chr1 201188407 201188698 -41475655 - L1ME LINE L1 -371 5793 5475 727 239 23 6 chr1 201188698 201188874 -41475479 + MIR SINE MIR 63 241 -21 595 282 76 40 chr1 201190983 201191241 -41473112 - MIR SINE MIR -1 261 3 611 255 123 66 chr1 201192857 201193206 -41471147 - MLT1I LTR MaLR 0 409 41 203 271 133 24 chr1 201193380 201193531 -41470822 - MIR3 SINE MIR -1 207 34 180 296 0 37 chr1 201194209 201194263 -41470090 - L2 LINE L2 -190 3082 3031 237 211 0 0 chr1 201194855 201194907 -41469446 + (TG)n Simple_repeat Simple_repeat 1 52 0 752 218 0 0 chr1 201195132 201195265 -41469088 + MER94 DNA DNA 1 133 -1 1737 170 3 11 chr1 201195605 201195920 -41468433 + AluJb SINE Alu 3 315 0 303 93 0 0 chr1 201196270 201196313 -41468040 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 227 340 148 45 chr1 201196318 201196695 -41467658 - L2 LINE L2 -17 3255 2840 2414 75 0 3 chr1 201196702 201197007 -41467346 + AluY SINE Alu 1 304 -7 31 88 0 0 chr1 201198172 201198252 -41466101 + AT_rich Low_complexity Low_complexity 1 80 0 352 296 37 30 chr1 201198254 201198389 -41465964 - L2 LINE L2 -15 3298 3163 809 227 12 31 chr1 201198396 201198559 -41465794 + FRAM SINE Alu 1 159 -17 514 267 72 48 chr1 201198580 201198641 -41465712 - MIR SINE MIR -2 260 202 430 145 26 0 chr1 201198641 201198717 -41465636 + MER116 DNA Mariner 3 80 0 514 267 72 48 chr1 201198717 201198906 -41465447 - MIR SINE MIR -60 202 4 278 283 40 20 chr1 201198934 201199033 -41465320 - L2 LINE L2 -243 3070 2970 1822 119 9 108 chr1 201199082 201199417 -41464936 - AluSg SINE Alu -8 302 1 262 317 8 50 chr1 201200631 201200751 -41463602 + MIR SINE MIR 77 191 -71 4054 247 68 25 chr1 201200763 201202016 -41462337 + L1ME1 LINE L1 35 1341 -5055 4662 226 59 64 chr1 201202026 201203045 -41461308 + L1ME1 LINE L1 2648 3657 -2558 2225 120 0 0 chr1 201203045 201203346 -41461007 + AluSg SINE Alu 1 301 -9 4662 226 59 64 chr1 201203346 201203992 -41460361 + L1ME1 LINE L1 3657 4305 -1910 1064 169 18 41 chr1 201203997 201204216 -41460137 - MER20 DNA MER1_type -5 214 1 4501 198 38 29 chr1 201204219 201206289 -41458064 + L1MB8 LINE L1 4300 6248 -155 324 0 0 0 chr1 201206289 201206325 -41458028 + (CA)n Simple_repeat Simple_repeat 2 37 0 4501 198 38 29 chr1 201206325 201206480 -41457873 + L1MB8 LINE L1 6248 6400 -3 2100 204 199 18 chr1 201206461 201207078 -41457275 + L1ME1 LINE L1 5339 6067 -168 * 642 212 20 7 chr1 201207090 201207241 -41457112 + L1MA10 LINE L1 6174 6326 -8 395 265 36 110 chr1 201208576 201208795 -41455558 + MIR SINE MIR 17 219 -43 784 211 0 0 chr1 201208854 201208982 -41455371 - FLAM_C SINE Alu -5 128 1 21 0 0 0 chr1 201209960 201209981 -41454372 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 201210133 201210154 -41454199 + AT_rich Low_complexity Low_complexity 1 21 0 412 290 31 57 chr1 201210836 201211029 -41453324 - MIR SINE MIR -46 216 29 243 0 0 0 chr1 201211135 201211162 -41453191 + (TGG)n Simple_repeat Simple_repeat 3 29 0 955 176 101 10 chr1 201211422 201211621 -41452732 + MER20 DNA MER1_type 1 217 -2 307 219 73 12 chr1 201212027 201212109 -41452244 - MIR3 SINE MIR -12 196 110 318 26 0 0 chr1 201212536 201212575 -41451778 + (CA)n Simple_repeat Simple_repeat 1 39 0 355 305 144 0 chr1 201213005 201213123 -41451230 + L2 LINE L2 3136 3270 -2 308 270 88 51 chr1 201213221 201213358 -41450995 - MIR SINE MIR -58 204 63 280 314 0 23 chr1 201214077 201214163 -41450190 - MIR SINE MIR -98 164 81 353 333 58 7 chr1 201215129 201215267 -41449086 + MIR3 SINE MIR 10 154 -54 30 27 0 0 chr1 201216443 201216480 -41447873 + AT_rich Low_complexity Low_complexity 1 37 0 260 339 31 31 chr1 201216504 201216634 -41447719 - MER5A DNA MER1_type 0 189 60 393 345 50 53 chr1 201217368 201217690 -41446663 - L2 LINE L2 -20 3252 2932 356 354 67 4 chr1 201217764 201217929 -41446424 + MIR3 SINE MIR 20 194 -14 303 71 0 0 chr1 201217995 201218037 -41446316 + (TG)n Simple_repeat Simple_repeat 1 42 0 396 0 0 0 chr1 201218166 201218210 -41446143 + (CA)n Simple_repeat Simple_repeat 1 44 0 24 0 0 0 chr1 201218588 201218612 -41445741 + AT_rich Low_complexity Low_complexity 1 24 0 374 324 7 7 chr1 201219347 201219486 -41444867 + L1ME4a LINE L1 5507 5645 -476 258 264 98 83 chr1 201219503 201219813 -41444540 + L1ME4a LINE L1 5715 6019 -102 2022 117 16 10 chr1 201219813 201220121 -41444232 - AluY SINE Alu -1 310 1 1610 191 0 32 chr1 201220124 201220433 -41443920 - AluJb SINE Alu -13 299 1 258 264 98 83 chr1 201220433 201220515 -41443838 + L1ME4a LINE L1 6020 6117 -4 2075 109 7 0 chr1 201220710 201220986 -41443367 + AluSx SINE Alu 24 301 -11 281 324 9 19 chr1 201221111 201221219 -41443134 + MIR3 SINE MIR 101 207 -1 276 349 84 0 chr1 201221572 201221738 -41442615 + MLT1L LTR MaLR 328 507 -108 239 267 228 0 chr1 201221915 201222016 -41442337 + L1MC4a LINE L1 4724 4847 -1299 508 366 40 5 chr1 201222039 201222241 -41442112 + MIR SINE MIR 6 214 -48 778 204 23 95 chr1 201222354 201222575 -41441778 - MER3 DNA MER1_type -4 205 1 304 323 79 24 chr1 201222899 201223063 -41441290 + LTR16C LTR ERVL 319 491 0 27 62 0 0 chr1 201223328 201223376 -41440977 + AT_rich Low_complexity Low_complexity 1 48 0 238 273 0 0 chr1 201223507 201223562 -41440791 + L2 LINE L2 3214 3268 -4 684 285 80 50 chr1 201223563 201223888 -41440465 + L1MC4a LINE L1 5304 5651 -470 1432 165 7 183 chr1 201223888 201224331 -41440022 - MLT1A1 LTR MaLR 0 365 1 684 285 80 50 chr1 201224331 201224506 -41439847 + L1MC4a LINE L1 5651 5819 -302 1704 206 79 57 chr1 201224522 201224699 -41439654 + MLT1C LTR MaLR 1 173 -294 2129 137 0 0 chr1 201224699 201224992 -41439361 + AluSg1 SINE Alu 1 293 -16 1704 206 79 57 chr1 201224992 201225271 -41439082 + MLT1C LTR MaLR 173 467 0 387 319 60 16 chr1 201226513 201226698 -41437655 - MIR SINE MIR -68 194 2 534 133 44 44 chr1 201227635 201227748 -41436605 - MIR3 SINE MIR 0 208 96 2282 108 54 38 chr1 201227813 201228182 -41436171 + THE1C LTR MaLR 1 375 0 733 233 41 12 chr1 201228516 201228688 -41435665 - MIR SINE MIR -8 254 78 253 266 94 15 chr1 201228869 201228991 -41435362 + MIR SINE MIR 19 156 -67 382 221 57 82 chr1 201229197 201229319 -41435034 - MIR SINE MIR -137 125 7 361 292 23 15 chr1 201229520 201229650 -41434703 - MER94 DNA DNA -3 131 1 231 114 0 0 chr1 201231299 201231334 -41433019 + (GAAAA)n Simple_repeat Simple_repeat 3 37 0 183 278 46 65 chr1 201232812 201232920 -41431433 + L3 LINE CR1 1131 1236 -341 381 358 21 16 chr1 201233353 201233540 -41430813 + L3 LINE CR1 1373 1560 -17 479 252 9 0 chr1 201233571 201233686 -41430667 - L2 LINE L2 0 3313 3198 209 341 49 0 chr1 201234500 201234582 -41429771 - MIR SINE MIR -77 131 46 334 254 49 28 chr1 201235454 201235596 -41428757 + MIR SINE MIR 78 222 -40 1274 281 83 52 chr1 201236275 201236851 -41427502 - L2 LINE L2 -702 2612 2019 212 303 15 15 chr1 201236844 201236910 -41427443 + L3 LINE CR1 1509 1574 -3 * 630 143 66 8 chr1 201236921 201237071 -41427282 - MER41-int LTR ERV1 -1473 3407 3243 16040 188 22 8 chr1 201237083 201242314 -41422039 - L1PB3 LINE L1 0 6870 1589 2028 190 96 31 chr1 201242314 201242772 -41421581 - LTR2B LTR ERV1 -2 488 1 16040 188 22 8 chr1 201242772 201243016 -41421337 - L1PB3 LINE L1 -5281 1589 1350 1802 198 110 22 chr1 201243036 201243490 -41420863 - L1PB3 LINE L1 -5700 1163 670 472 274 57 0 chr1 201243515 201243690 -41420663 - L1PB3 LINE L1 -6673 190 6 231 296 0 0 chr1 201244355 201244426 -41419927 + T-rich Low_complexity Low_complexity 1 71 0 189 0 0 0 chr1 201244852 201244873 -41419480 + (TTA)n Simple_repeat Simple_repeat 2 22 0 246 325 103 77 chr1 201245036 201245454 -41418899 - L2 LINE L2 -25 3247 2819 238 346 134 14 chr1 201246373 201246590 -41417763 + L3b LINE CR1 1288 1530 -53 326 252 95 83 chr1 201247025 201247213 -41417140 + MIR SINE MIR 39 240 -22 948 286 8 8 chr1 201248690 201248931 -41415422 + MIR SINE MIR 1 241 -21 831 284 78 112 chr1 201249322 201250287 -41414066 - L3 LINE CR1 -9 1568 637 363 295 129 46 chr1 201250696 201250770 -41413583 - LTR40a LTR ERVL -1 518 452 270 0 0 0 chr1 201250770 201250800 -41413553 + (CA)n Simple_repeat Simple_repeat 2 31 0 363 295 129 46 chr1 201250800 201251027 -41413326 - LTR40a LTR ERVL -67 452 135 261 317 33 17 chr1 201251281 201251401 -41412952 - MARNA DNA Mariner -85 501 380 2565 74 6 0 chr1 201252688 201252999 -41411354 + AluSq SINE Alu 1 313 0 223 326 22 11 chr1 201253526 201253618 -41410735 - L3b LINE CR1 -132 1451 1359 1683 167 28 3 chr1 201253975 201254263 -41410090 - L1MB3 LINE L1 -2 6181 5887 5007 74 48 9 chr1 201254263 201254917 -41409436 - L1PA10 LINE L1 -2 6166 5476 2195 158 93 5 chr1 201254917 201255302 -41409051 - L1MB3 LINE L1 -282 5901 5476 369 0 0 0 chr1 201255302 201255343 -41409010 + (TG)n Simple_repeat Simple_repeat 2 42 0 2195 158 93 5 chr1 201255343 201255367 -41408986 - L1MB3 LINE L1 -707 5476 5456 381 351 54 5 chr1 201255690 201255895 -41408458 + MIR SINE MIR 48 262 0 192 77 0 0 chr1 201256465 201256491 -41407862 + (T)n Simple_repeat Simple_repeat 1 26 0 591 314 71 13 chr1 201256803 201257042 -41407311 + MIR SINE MIR 4 256 -6 279 274 226 0 chr1 201257836 201257938 -41406415 - L2 LINE L2 -1 3312 3188 227 384 20 7 chr1 201258609 201258760 -41405593 - MIR SINE MIR -60 202 50 245 230 122 27 chr1 201258962 201259036 -41405317 - MLT1K LTR MaLR -38 550 470 690 205 16 76 chr1 201259314 201259499 -41404854 - MER5B DNA MER1_type -3 175 2 482 253 167 0 chr1 201259521 201259671 -41404682 + MER5A DNA MER1_type 13 187 -2 250 345 0 12 chr1 201259856 201259940 -41404413 + MER5B DNA MER1_type 27 109 -69 438 347 141 4 chr1 201261334 201261582 -41402771 - L2 LINE L2 -10 3262 2981 399 341 37 7 chr1 201263890 201264025 -41400328 - MER91C DNA MER1_type 0 140 2 499 308 32 28 chr1 201264239 201264489 -41399864 + MER102a DNA MER1_type 80 330 0 489 291 53 25 chr1 201265928 201266149 -41398204 - MIR SINE MIR -14 248 24 247 259 0 0 chr1 201266335 201266389 -41397964 + MIR SINE MIR 195 248 -14 398 246 139 9 chr1 201266566 201266755 -41397598 - MIR SINE MIR -48 214 7 670 221 38 32 chr1 201266861 201267019 -41397334 + MER5B DNA MER1_type 2 160 -18 341 293 43 12 chr1 201268654 201268867 -41395486 - MIR SINE MIR 0 262 2 411 240 29 37 chr1 201269106 201269287 -41395066 + L1ME4a LINE L1 5599 5777 -353 616 265 109 36 chr1 201269527 201269642 -41394711 + L1ME4a LINE L1 5795 5900 -221 2276 110 3 0 chr1 201269642 201269941 -41394412 + AluSx SINE Alu 1 300 -12 616 265 109 36 chr1 201269941 201270127 -41394226 + L1ME4a LINE L1 5900 6118 -3 269 327 65 50 chr1 201270662 201270931 -41393422 - L2 LINE L2 -237 3035 2756 232 354 31 39 chr1 201270930 201271060 -41393293 - MER5A DNA MER1_type -5 184 56 * 616 152 0 0 chr1 201271273 201271365 -41392988 + AluJb SINE Alu 211 302 -10 306 310 53 0 chr1 201272069 201272182 -41392171 - MIR SINE MIR -66 196 78 304 327 91 64 chr1 201272860 201273221 -41391132 - L2 LINE L2 -2 3270 2900 213 39 0 0 chr1 201273359 201273385 -41390968 + (TG)n Simple_repeat Simple_repeat 1 26 0 373 332 80 9 chr1 201273468 201273694 -41390659 - L2 LINE L2 -622 2692 2451 188 319 43 14 chr1 201274538 201274607 -41389746 - L3 LINE CR1 -6 1571 1501 * 278 239 14 14 chr1 201274594 201274665 -41389688 - MIR SINE MIR -164 98 28 30 0 0 0 chr1 201275184 201275214 -41389139 + AT_rich Low_complexity Low_complexity 1 30 0 525 250 97 34 chr1 201275337 201275579 -41388774 - L1MC4a LINE L1 -155 5966 5707 216 377 97 7 chr1 201276741 201276895 -41387458 + MER5A DNA MER1_type 7 174 -15 187 228 123 0 chr1 201278359 201278416 -41385937 - MIR3 SINE MIR -37 171 108 423 0 0 0 chr1 201279816 201279863 -41384490 + (TG)n Simple_repeat Simple_repeat 1 47 0 188 213 66 16 chr1 201280235 201280296 -41384057 - MIR SINE MIR -102 106 43 376 255 38 108 chr1 201281052 201281264 -41383089 - L2 LINE L2 -32 3240 3044 22 0 0 0 chr1 201282511 201282533 -41381820 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 201282926 201282947 -41381406 + AT_rich Low_complexity Low_complexity 1 21 0 289 234 96 21 chr1 201283576 201283778 -41380575 + L1M4c LINE L1 2345 2563 -3819 1199 150 41 0 chr1 201283801 201284021 -41380332 - L1MA7 LINE L1 -2 6289 6061 2173 261 42 18 chr1 201284045 201284705 -41379648 - L1ME1 LINE L1 -5 6421 5746 4544 117 113 129 chr1 201284705 201286130 -41378223 - pTR5 LTR ERV1 -2 2436 742 763 138 197 11 chr1 201286131 201286222 -41378131 - L1ME1 LINE L1 -2290 5755 5682 282 56 0 0 chr1 201286222 201286258 -41378095 + (TG)n Simple_repeat Simple_repeat 2 37 0 763 138 197 11 chr1 201286258 201286354 -41377999 - L1ME1 LINE L1 -2363 5682 5533 2044 200 39 146 chr1 201286358 201287003 -41377350 - MER70B LTR ERVL 0 578 3 766 192 103 27 chr1 201287005 201287229 -41377124 - L1ME1 LINE L1 -872 5534 5294 1591 255 73 40 chr1 201287299 201288184 -41376169 - L1ME1 LINE L1 -4525 2062 1118 454 234 16 24 chr1 201288173 201288297 -41376056 - L1PB4 LINE L1 0 6156 6034 * 436 268 25 6 chr1 201288299 201288456 -41375897 - L1ME1 LINE L1 -5426 1161 1002 4095 133 4 73 chr1 201288473 201289208 -41375145 - L1PA16 LINE L1 -9 6860 6177 11151 196 50 39 chr1 201289209 201290565 -41373788 - L1PA16 LINE L1 -1149 5700 4360 222 37 0 0 chr1 201290565 201290592 -41373761 + (TTA)n Simple_repeat Simple_repeat 1 27 0 11151 196 50 39 chr1 201290592 201292952 -41371401 - L1PA16 LINE L1 -2489 4360 1873 1151 22 0 0 chr1 201493116 201493254 -41171099 + L1PA4 LINE L1 6015 6152 -3 292 371 31 44 chr1 201493504 201493733 -41170620 + L3 LINE CR1 352 577 -1000 * 373 343 80 64 chr1 201493731 201494169 -41170184 - L2 LINE L2 0 3272 2828 219 296 17 35 chr1 201494282 201494397 -41169956 - L2 LINE L2 -550 2764 2652 24 0 0 0 chr1 201494600 201494624 -41169729 + AT_rich Low_complexity Low_complexity 1 24 0 2149 137 19 30 chr1 201495772 201496136 -41168217 + THE1B LTR MaLR 5 364 0 220 275 284 0 chr1 201496316 201496425 -41167928 - MIR SINE MIR -50 212 73 15919 135 24 17 chr1 201497519 201499572 -41164781 + Tigger2 DNA MER2_type 2 2080 -638 2092 144 0 0 chr1 201499572 201499864 -41164489 + AluSx SINE Alu 3 294 -18 15919 135 24 17 chr1 201499864 201500507 -41163846 + Tigger2 DNA MER2_type 2080 2717 -1 233 186 0 0 chr1 201500629 201500672 -41163681 - MLT2F LTR ERVL -2 661 619 195 257 0 0 chr1 201500677 201500751 -41163602 + (CA)n Simple_repeat Simple_repeat 1 74 0 1186 190 75 42 chr1 201500752 201501084 -41163269 - MLT2C1 LTR ERVL -54 343 1 583 274 126 71 chr1 201502058 201502697 -41161656 - L1 LINE L1 -2541 3605 2932 253 81 0 0 chr1 201502761 201502770 -41161583 + (TA)n Simple_repeat Simple_repeat 2 10 -28 2256 76 45 0 chr1 201502770 201503060 -41161293 + AluSp SINE Alu 1 303 -10 253 81 0 0 chr1 201503060 201503087 -41161266 + (TA)n Simple_repeat Simple_repeat 9 38 0 519 151 0 0 chr1 201503087 201503180 -41161173 + (CA)n Simple_repeat Simple_repeat 2 94 0 182 36 0 36 chr1 201504142 201504170 -41160183 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 449 149 0 0 chr1 201504694 201504768 -41159585 - MLT1B LTR MaLR 0 390 317 1476 102 26 146 chr1 201504777 201505120 -41159233 - AluSx SINE Alu 0 302 1 1005 224 55 76 chr1 201505120 201505463 -41158890 - MLT1B LTR MaLR -54 336 1 466 306 34 7 chr1 201505519 201505666 -41158687 + MIR SINE MIR 7 157 -105 307 288 0 0 chr1 201505676 201505742 -41158611 + LTR16B LTR ERVL 1 66 -398 331 245 9 47 chr1 201505767 201505873 -41158480 + LTR16B LTR ERVL 363 464 0 1119 333 57 47 chr1 201505886 201506709 -41157644 + HERV16 LTR ERVL 8 838 -4158 2321 313 108 59 chr1 201506772 201507748 -41156605 + HERV16 LTR ERVL 930 2015 -2981 1536 211 50 67 chr1 201507748 201508151 -41156202 - MSTD LTR MaLR 0 396 1 2321 313 108 59 chr1 201508151 201508757 -41155596 + HERV16 LTR ERVL 2015 2590 -2406 1981 361 57 25 chr1 201508761 201509562 -41154791 + HERV16 LTR ERVL 3360 4134 -1520 2379 112 120 5 chr1 201509562 201509946 -41154407 - MSTA LTR MaLR 0 428 1 1981 361 57 25 chr1 201509946 201511004 -41153349 + HERV16 LTR ERVL 4134 5278 -376 592 324 54 20 chr1 201511256 201511552 -41152801 + LTR16B LTR ERVL 146 451 -13 203 171 0 0 chr1 201513929 201513964 -41150389 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 28 71 0 0 chr1 201514767 201514823 -41149530 + AT_rich Low_complexity Low_complexity 1 56 0 1244 99 6 0 chr1 201514884 201515046 -41149307 - AluSp SINE Alu -17 296 134 1915 136 10 14 chr1 201515219 201515513 -41148840 + AluSx SINE Alu 1 293 -19 690 268 61 43 chr1 201515753 201515984 -41148369 + MIR SINE MIR 18 252 -10 343 261 29 51 chr1 201516210 201516348 -41148005 + L1ME4a LINE L1 5685 5819 -302 21 0 0 0 chr1 201516381 201516402 -41147951 + AT_rich Low_complexity Low_complexity 1 21 0 1805 146 11 11 chr1 201516402 201516689 -41147664 - AluSx SINE Alu -25 287 1 313 240 50 20 chr1 201516799 201516899 -41147454 + L1ME4a LINE L1 6008 6110 -11 27 0 0 0 chr1 201516981 201517008 -41147345 + AT_rich Low_complexity Low_complexity 1 27 0 246 350 50 25 chr1 201517287 201517447 -41146906 + MIR3 SINE MIR 17 180 -28 29 70 0 0 chr1 201517464 201517521 -41146832 + AT_rich Low_complexity Low_complexity 1 57 0 1286 247 38 65 chr1 201518219 201518762 -41145591 + MLT1E3 LTR MaLR 5 608 -16 647 159 9 9 chr1 201520367 201520480 -41143873 + AluSq/x SINE Alu 1 113 -200 1264 131 4 52 chr1 201520580 201520809 -41143544 + AluSq SINE Alu 70 287 -26 182 167 0 0 chr1 201521192 201521222 -41143131 - L2 LINE L2 -10 3303 3274 246 81 0 0 chr1 201521868 201521905 -41142448 + (CA)n Simple_repeat Simple_repeat 2 38 0 261 98 0 0 chr1 201521960 201522001 -41142352 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr1 201522686 201522707 -41141646 + AT_rich Low_complexity Low_complexity 1 21 0 232 340 156 49 chr1 201522794 201523244 -41141109 + L1MEd LINE L1 133 630 -5489 952 161 90 63 chr1 201523286 201523509 -41140844 + LTR1B LTR ERV1 1 229 -597 1344 138 0 0 chr1 201523509 201523697 -41140656 - AluSx SINE Alu -124 188 1 782 285 31 8 chr1 201523699 201523959 -41140394 - L1M4 LINE L1 -1872 4274 4009 1604 165 74 52 chr1 201523982 201524479 -41139874 + LTR1B LTR ERV1 261 826 0 207 204 0 0 chr1 201524817 201524866 -41139487 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 234 236 67 79 chr1 201524867 201525032 -41139321 + L1MEd LINE L1 988 1150 -4969 2133 94 0 17 chr1 201525043 201525363 -41138990 + AluY SINE Alu 1 315 0 906 224 35 48 chr1 201525377 201525667 -41138686 + pTR5 LTR ERV1 743 1028 -1410 4651 130 41 39 chr1 201525853 201526677 -41137676 + LTR12 LTR ERV1 1 826 0 1616 194 17 7 chr1 201527107 201527396 -41136957 + AluJb SINE Alu 4 295 -17 24 32 0 0 chr1 201527428 201527459 -41136894 + AT_rich Low_complexity Low_complexity 1 31 0 1666 307 179 17 chr1 201528396 201529488 -41134865 + L2 LINE L2 1705 2973 -341 363 243 44 40 chr1 201529529 201529678 -41134675 + MLT1H LTR MaLR 57 175 -234 928 309 104 37 chr1 201530430 201530938 -41133415 - MLT1H1 LTR MaLR -6 549 8 213 205 0 0 chr1 201531080 201531119 -41133234 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr1 201531393 201531415 -41132938 + AT_rich Low_complexity Low_complexity 1 22 0 2205 70 0 58 chr1 201531562 201531894 -41132459 + AluY SINE Alu 1 311 0 227 314 35 35 chr1 201531982 201532068 -41132285 + L2 LINE L2 3157 3242 -30 1998 137 0 3 chr1 201532636 201532961 -41131392 + AluSx SINE Alu 1 324 0 258 303 0 45 chr1 201533773 201533862 -41130491 + L2 LINE L2 3223 3307 -6 2106 253 77 41 chr1 201534396 201535054 -41129299 - L1ME2 LINE L1 -2 6973 6340 2393 94 3 0 chr1 201535054 201535361 -41128992 - AluSp SINE Alu -5 308 1 2106 253 77 41 chr1 201535361 201535454 -41128899 - L1ME2 LINE L1 -635 6340 6252 1888 163 69 69 chr1 201535454 201535872 -41128481 + MER47B DNA MER2_type 1 418 0 2106 253 77 41 chr1 201535872 201535974 -41128379 - L1ME2 LINE L1 -723 6252 6088 938 220 0 33 chr1 201535977 201536191 -41128162 - AluJo SINE Alu -18 294 88 1608 235 156 40 chr1 201536192 201537137 -41127216 - L1ME2 LINE L1 -857 6100 5047 292 217 131 76 chr1 201537134 201537332 -41127021 - L1ME2 LINE L1 -4657 2481 2273 * 583 159 29 0 chr1 201537338 201537508 -41126845 + (TA)n Simple_repeat Simple_repeat 2 176 0 247 234 52 0 chr1 201537508 201537585 -41126768 - L1ME2 LINE L1 -5228 1910 1830 420 264 51 71 chr1 201537630 201537928 -41126425 - L1ME2 LINE L1 -5151 1796 1378 289 212 242 20 chr1 201538947 201539046 -41125307 + MIR SINE MIR 127 247 -15 21 95 0 0 chr1 201539725 201539788 -41124565 + AT_rich Low_complexity Low_complexity 1 63 0 25 65 0 0 chr1 201539920 201539966 -41124387 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr1 201540333 201540357 -41123996 + AT_rich Low_complexity Low_complexity 1 24 0 317 254 17 25 chr1 201540413 201540530 -41123823 - LTR55 LTR ERV -8 540 425 3435 163 35 11 chr1 201540530 201541162 -41123191 + MER39B LTR ERV1 1 647 -6 277 197 45 0 chr1 201541239 201541305 -41123048 - LTR55 LTR ERV -238 310 242 192 125 0 0 chr1 201541310 201541342 -41123011 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 816 203 101 14 chr1 201541367 201541574 -41122779 - LTR55 LTR ERV -323 225 1 209 364 78 31 chr1 201541574 201541703 -41122650 + L2 LINE L2 2939 3073 -199 322 363 0 0 chr1 201541803 201541905 -41122448 + L2 LINE L2 3204 3305 -8 340 332 78 48 chr1 201541907 201542280 -41122073 + L3 LINE CR1 1192 1575 -2 2957 244 43 26 chr1 201542337 201543049 -41121304 - L1ME1 LINE L1 -5 6161 5463 1761 187 15 18 chr1 201543049 201543392 -41120961 - MER61A LTR ERV1 0 343 2 2957 244 43 26 chr1 201543392 201544333 -41120020 - L1ME1 LINE L1 -703 5463 4398 199 312 96 40 chr1 201544755 201544777 -41119576 - L3 LINE CR1 -187 1390 1371 2148 123 0 7 chr1 201544777 201545086 -41119267 + AluSg SINE Alu 1 307 -3 199 312 96 40 chr1 201545086 201545188 -41119165 - L3 LINE CR1 -206 1371 1259 3969 88 4 14 chr1 201545481 201546041 -41118312 + MER41A LTR ERV1 1 554 0 22 0 0 0 chr1 201546123 201546145 -41118208 + AT_rich Low_complexity Low_complexity 1 22 0 279 366 36 26 chr1 201546588 201546782 -41117571 + MIR SINE MIR 64 259 -3 353 263 12 0 chr1 201547085 201547165 -41117188 - MER5A DNA MER1_type -100 89 9 568 179 132 0 chr1 201547201 201547340 -41117013 + MER3 DNA MER1_type 48 204 -5 3979 96 105 3 chr1 201547932 201548534 -41115819 - MER4A LTR ERV1 0 664 2 202 124 31 54 chr1 201548772 201548901 -41115452 + (TA)n Simple_repeat Simple_repeat 1 126 0 46 54 0 0 chr1 201548963 201549037 -41115316 + AT_rich Low_complexity Low_complexity 1 74 0 304 70 0 0 chr1 201550240 201550283 -41114070 - MADE1 DNA Mariner -37 43 1 269 277 40 74 chr1 201550620 201550916 -41113437 - L1ME LINE L1 -584 5582 5297 32 81 0 0 chr1 201550917 201550991 -41113362 + AT_rich Low_complexity Low_complexity 1 74 0 603 279 82 49 chr1 201551073 201551463 -41112890 - HAL1 LINE L1 -480 2027 1625 438 301 161 8 chr1 201551492 201551728 -41112625 - HAL1 LINE L1 -1349 1158 887 298 195 24 0 chr1 201551905 201551987 -41112366 + GA-rich Low_complexity Low_complexity 1 84 0 1837 205 8 19 chr1 201551988 201552358 -41111995 - MLT2D LTR ERVL -48 366 1 425 338 78 54 chr1 201552359 201552972 -41111381 - HAL1 LINE L1 -1786 721 94 2837 214 34 35 chr1 201553151 201553889 -41110464 - L1MB7 LINE L1 -9 6175 5439 5222 270 70 59 chr1 201553901 201556113 -41108240 + L1M2 LINE L1 10 2245 -4604 317 134 0 42 chr1 201556116 201556188 -41108165 - MLT2C1 LTR ERVL -2 514 345 335 143 0 0 chr1 201556204 201556260 -41108093 + MLT2A2 LTR ERVL 358 413 -40 444 147 0 0 chr1 201556407 201556482 -41107871 + (TG)n Simple_repeat Simple_repeat 2 76 0 3097 93 15 0 chr1 201556486 201556893 -41107460 - MLT2A2 LTR ERVL -40 413 1 2628 211 19 22 chr1 201556898 201557970 -41106383 + L1M2 LINE L1 2248 3316 -3532 1278 265 84 40 chr1 201557982 201558556 -41105797 - LTR34 LTR ERV1 -4 695 97 409 196 47 19 chr1 201558570 201558677 -41105676 - MER4C LTR ERV1 -349 116 7 4626 215 105 3 chr1 201558693 201559951 -41104402 + L1M2 LINE L1 3332 4717 -2131 3131 264 22 29 chr1 201559980 201560903 -41103450 - L1M4 LINE L1 -5622 920 5 2077 126 0 24 chr1 201562180 201562514 -41101839 + AluSx SINE Alu 1 327 0 1958 144 32 26 chr1 201563286 201563627 -41100726 - MLT1B LTR MaLR -4 386 44 234 0 0 0 chr1 201563925 201563951 -41100402 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1964 129 7 7 chr1 201563961 201564247 -41100106 - AluSx SINE Alu -26 286 1 241 321 99 25 chr1 201566450 201566531 -41097822 - L2 LINE L2 0 3272 3186 867 161 0 0 chr1 201570884 201571027 -41093326 - AluSg/x SINE Alu -7 303 161 280 192 0 0 chr1 201571136 201571188 -41093165 + AluS SINE Alu 227 278 -23 219 88 0 0 chr1 201571434 201571468 -41092885 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 399 254 254 35 chr1 201572253 201572499 -41091854 + L2 LINE L2 2210 2527 -787 1915 147 0 0 chr1 201572499 201572778 -41091575 - AluSx SINE Alu -18 294 16 399 254 254 35 chr1 201572778 201572815 -41091538 + L2 LINE L2 2527 2555 -759 322 185 0 31 chr1 201572881 201572946 -41091407 + MSTB1 LTR MaLR 83 145 -287 1106 178 26 0 chr1 201573354 201573545 -41090808 + MSTB1 LTR MaLR 94 289 -143 1712 171 19 15 chr1 201574425 201574798 -41089555 - MSTB1 LTR MaLR 0 432 1 4097 233 87 70 chr1 201574798 201574960 -41089393 - MSTB1-int LTR MaLR 0 1580 1422 180 0 0 0 chr1 201574960 201574980 -41089373 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4097 233 87 70 chr1 201574980 201576369 -41087984 - MSTB1-int LTR MaLR -158 1422 3 2029 167 50 19 chr1 201576371 201576790 -41087563 - MSTB1 LTR MaLR 0 432 1 746 122 32 0 chr1 201576909 201577032 -41087321 - MSTB1 LTR MaLR -305 127 1 1980 159 0 0 chr1 201577071 201577367 -41086986 - AluSx SINE Alu -16 296 1 320 325 69 23 chr1 201577521 201577765 -41086588 - L2 LINE L2 -237 3035 2796 2298 103 3 6 chr1 201578649 201578960 -41085393 + AluSp SINE Alu 2 311 -2 1890 233 24 88 chr1 201578975 201579567 -41084786 - MLT2B3 LTR ERVL 0 554 1 459 125 0 0 chr1 201579872 201579944 -41084409 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 1125 161 68 38 chr1 201580094 201580386 -41083967 + AluY SINE Alu 1 301 0 302 100 0 0 chr1 201580488 201580538 -41083815 + Alu SINE Alu 253 302 0 242 226 24 24 chr1 201580553 201580657 -41083696 - L1P4 LINE L1 -585 5581 5478 403 256 154 39 chr1 201581373 201581607 -41082746 - MLT1J2 LTR MaLR -125 325 65 1959 127 11 0 chr1 201581693 201581976 -41082377 - AluSx SINE Alu -12 300 15 1550 202 139 25 chr1 201581976 201582416 -41081937 - LTR2B LTR ERV1 0 490 1 280 350 65 0 chr1 201582947 201583070 -41081283 + L2 LINE L2 3182 3312 -1 318 239 0 120 chr1 201583476 201583593 -41080760 - L1MC4 LINE L1 -1330 6712 6610 252 149 0 0 chr1 201583594 201583641 -41080712 + (TA)n Simple_repeat Simple_repeat 2 48 0 2073 154 34 0 chr1 201583650 201584008 -41080345 - L1PA16 LINE L1 -9 6157 5788 2938 124 4 31 chr1 201584010 201584518 -41079835 + L1PA16 LINE L1 5283 5776 -390 620 37 24 0 chr1 201584525 201584607 -41079746 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 22 0 0 0 chr1 201585109 201585131 -41079222 + AT_rich Low_complexity Low_complexity 1 22 0 736 281 18 27 chr1 201585208 201585432 -41078921 + MER58A DNA MER1_type 1 222 -2 200 369 0 0 chr1 201585694 201585778 -41078575 - L2 LINE L2 -567 2747 2664 283 258 14 30 chr1 201585829 201585907 -41078446 - MER5B DNA MER1_type -79 99 31 272 405 74 24 chr1 201585936 201586447 -41077906 - L2 LINE L2 -678 2636 2100 309 310 118 6 chr1 201586964 201587296 -41077057 + L1ME3A LINE L1 789 1123 -5082 826 239 11 5 chr1 201587296 201587480 -41076873 + MER68 LTR ERV1 378 562 0 685 270 98 43 chr1 201587494 201588098 -41076255 + L1ME3A LINE L1 3868 4504 -1711 1483 253 55 35 chr1 201588110 201588710 -41075643 - MLT1E2 LTR MaLR 0 626 57 368 290 116 27 chr1 201588943 201589236 -41075117 + L1ME3A LINE L1 4741 5059 -1156 726 294 103 22 chr1 201589249 201589617 -41074736 + L1ME3A LINE L1 5564 5961 -278 22 0 0 0 chr1 201589893 201589915 -41074438 + AT_rich Low_complexity Low_complexity 1 22 0 248 188 62 10 chr1 201590288 201590384 -41073969 + (TATAA)n Simple_repeat Simple_repeat 4 104 0 22 80 0 0 chr1 201590429 201590479 -41073874 + AT_rich Low_complexity Low_complexity 1 50 0 50 18 0 0 chr1 201590485 201590542 -41073811 + AT_rich Low_complexity Low_complexity 1 57 0 27 0 0 0 chr1 201590736 201590763 -41073590 + AT_rich Low_complexity Low_complexity 1 27 0 313 336 16 16 chr1 201591370 201591492 -41072861 + MIR3 SINE MIR 82 203 -5 1004 198 88 68 chr1 201591900 201592192 -41072161 + LTR54B LTR ERV1 1 308 -190 1939 137 23 3 chr1 201592192 201592492 -41071861 - AluSx SINE Alu -6 306 1 1004 198 88 68 chr1 201592492 201592685 -41071668 + LTR54B LTR ERV1 308 496 -2 323 379 104 21 chr1 201592806 201593094 -41071259 - HAL1 LINE L1 -1782 725 414 229 333 65 8 chr1 201593149 201593272 -41071081 - HAL1 LINE L1 -2369 138 9 727 225 52 73 chr1 201593415 201593785 -41070568 - LTR56 LTR ERV1 0 635 86 1974 108 3 65 chr1 201593785 201594108 -41070245 - AluSq SINE Alu -10 303 1 727 225 52 73 chr1 201594108 201594171 -41070182 - LTR56 LTR ERV1 -549 86 23 1141 20 14 14 chr1 201594174 201594322 -41070031 + (TTTC)n Simple_repeat Simple_repeat 3 150 0 681 281 90 7 chr1 201594386 201594696 -41069657 + LTR37A LTR ERV1 71 406 -20 346 213 0 13 chr1 201595040 201595115 -41069238 + LTR24B LTR ERV1 4 77 -499 615 226 24 38 chr1 201595281 201595493 -41068860 + LTR24B LTR ERV1 361 569 -7 460 322 11 6 chr1 201595508 201595685 -41068668 + LTR24B-int LTR ERV1 17 194 -4929 254 231 31 0 chr1 201595854 201595919 -41068434 + LTR24B-int LTR ERV1 541 607 -4516 537 199 0 0 chr1 201596418 201596559 -41067794 + CT-rich Low_complexity Low_complexity 3 143 0 25 19 8 0 chr1 201596699 201596772 -41067581 + AT_rich Low_complexity Low_complexity 1 32 0 702 161 40 0 chr1 201598138 201598262 -41066091 + FLAM_C SINE Alu 12 140 -3 2214 90 0 47 chr1 201599037 201599359 -41064994 + AluSx SINE Alu 1 307 -5 201 255 0 0 chr1 201599454 201599501 -41064852 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 354 327 67 40 chr1 201599873 201600318 -41064035 + PABL_B-int LTR ERV1 2142 2553 -2094 2116 111 10 0 chr1 201600503 201600801 -41063552 - AluSq SINE Alu -12 301 1 314 337 0 0 chr1 201601180 201601266 -41063087 + PABL_B-int LTR ERV1 5633 5718 -1404 2494 55 0 26 chr1 201601402 201601710 -41062643 - AluY SINE Alu -11 300 1 765 311 62 68 chr1 201601821 201602487 -41061866 + PABL_B-int LTR ERV1 6014 6675 -447 290 205 13 26 chr1 201602968 201603046 -41061307 + LTR24B LTR ERV1 1 77 -499 732 272 50 34 chr1 201603108 201603465 -41060888 + LTR24B LTR ERV1 207 569 -7 285 243 68 0 chr1 201603487 201603561 -41060792 + MIR SINE MIR 172 250 -12 207 69 0 0 chr1 201604053 201604082 -41060271 + (CTG)n Simple_repeat Simple_repeat 1 29 0 3507 136 19 57 chr1 201604171 201604568 -41059785 - MER39B LTR ERV1 0 653 291 2549 42 0 3 chr1 201604568 201604879 -41059474 - AluY SINE Alu -1 310 1 3507 136 19 57 chr1 201604879 201605160 -41059193 - MER39B LTR ERV1 -362 291 1 23 0 0 0 chr1 201605767 201605790 -41058563 + AT_rich Low_complexity Low_complexity 1 23 0 348 287 28 19 chr1 201606481 201606589 -41057764 - MIR SINE MIR -141 121 13 1871 247 73 66 chr1 201606856 201607911 -41056442 - L1ME1 LINE L1 -190 5976 4908 198 0 0 0 chr1 201607911 201607933 -41056420 + (TC)n Simple_repeat Simple_repeat 2 23 0 1871 247 73 66 chr1 201607933 201608405 -41055948 - L1ME1 LINE L1 -1258 4908 4441 763 253 50 8 chr1 201608455 201608716 -41055637 - L1ME1 LINE L1 -1926 4220 3949 1513 131 52 16 chr1 201608833 201609085 -41055268 - THE1C LTR MaLR -114 261 1 1383 65 10 15 chr1 201609085 201609286 -41055067 - THE1C-int LTR MaLR 0 1580 1381 405 191 0 0 chr1 201609327 201609390 -41054963 - AluJb SINE Alu -56 246 184 689 258 19 0 chr1 201609427 201609640 -41054713 + L1M4 LINE L1 2493 2709 -3437 871 180 15 117 chr1 201609641 201609841 -41054512 - THE1C LTR MaLR 0 375 188 509 241 17 47 chr1 201609843 201610075 -41054278 - L1ME1 LINE L1 -3651 2495 2271 1726 209 63 8 chr1 201610084 201610482 -41053871 - L1MB7 LINE L1 -19 6663 6244 875 173 40 45 chr1 201610486 201610688 -41053665 - L1MB7 LINE L1 -494 6182 5982 807 72 0 0 chr1 201610695 201610792 -41053561 - AluY SINE Alu -18 293 197 1885 215 23 10 chr1 201610792 201611369 -41052984 - L1MB7 LINE L1 -696 5986 5406 4497 106 14 13 chr1 201611383 201612089 -41052264 - L1PA14 LINE L1 -1 6160 5454 3608 242 45 24 chr1 201612158 201612423 -41051930 - L1MB7 LINE L1 -5506 1036 778 219 114 0 0 chr1 201612423 201612458 -41051895 + (TG)n Simple_repeat Simple_repeat 2 36 0 3608 242 45 24 chr1 201612458 201613201 -41051152 - L1MB7 LINE L1 -5764 778 28 735 240 58 4 chr1 201613218 201613460 -41050893 - L1MEc LINE L1 -3988 2408 2154 292 354 80 29 chr1 201613604 201613779 -41050574 - LTR16B LTR ERVL -274 190 7 1353 250 17 28 chr1 201613851 201614207 -41050146 + MLT1A2 LTR MaLR 1 352 -22 2313 91 0 7 chr1 201614209 201614506 -41049847 - AluSc SINE Alu -14 295 1 292 172 35 0 chr1 201614760 201614905 -41049448 + (TA)n Simple_repeat Simple_repeat 2 151 0 35 24 0 0 chr1 201615725 201615767 -41048586 + AT_rich Low_complexity Low_complexity 1 42 0 2402 62 0 0 chr1 201615829 201616134 -41048219 - L1PA6 LINE L1 -5 6149 5845 243 368 57 19 chr1 201616772 201616878 -41047475 + L2 LINE L2 3154 3263 -9 24 53 0 0 chr1 201616999 201617037 -41047316 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr1 201617067 201617101 -41047252 + AT_rich Low_complexity Low_complexity 1 34 0 1164 109 6 0 chr1 201617915 201618071 -41046282 + AluSg/x SINE Alu 135 291 -21 25 0 0 0 chr1 201618353 201618378 -41045975 + AT_rich Low_complexity Low_complexity 1 25 0 227 333 71 35 chr1 201619074 201619215 -41045138 - MIR SINE MIR -115 147 2 353 324 22 22 chr1 201620294 201620476 -41043877 + MIR SINE MIR 75 256 -6 25 51 0 0 chr1 201620566 201620605 -41043748 + AT_rich Low_complexity Low_complexity 1 39 0 605 360 62 24 chr1 201620730 201621100 -41043253 - MLT1I LTR MaLR -1 408 25 303 289 74 71 chr1 201621308 201621644 -41042709 - L1M4 LINE L1 -1700 4446 4110 2086 144 88 44 chr1 201622111 201622470 -41041883 - MSTC LTR MaLR -1 427 46 2377 88 3 0 chr1 201622470 201622767 -41041586 - AluSp SINE Alu -15 298 1 2086 144 88 44 chr1 201622767 201622816 -41041537 - MSTC LTR MaLR -382 46 1 469 228 134 8 chr1 201623134 201623261 -41041092 - Charlie4 DNA MER1_type -1818 143 1 24 0 0 0 chr1 201623946 201623970 -41040383 + AT_rich Low_complexity Low_complexity 1 24 0 188 339 54 54 chr1 201624594 201624706 -41039647 - L2 LINE L2 -34 3238 3127 2515 84 0 0 chr1 201624756 201625066 -41039287 + AluSg SINE Alu 1 310 0 302 207 0 0 chr1 201625467 201625525 -41038828 + MER21A LTR ERV1 13 70 -861 555 109 43 109 chr1 201625634 201625772 -41038581 + MER21A LTR ERV1 70 198 -733 * 2318 186 87 131 chr1 201625756 201626507 -41037846 + MER21A LTR ERV1 139 856 -75 1531 292 36 7 chr1 201626566 201627004 -41037349 + LTR16B LTR ERVL 10 460 -4 620 299 34 5 chr1 201627248 201627452 -41036901 + MER63A DNA MER1_type 1 210 0 605 229 16 4 chr1 201627606 201627788 -41036565 - MSTD LTR MaLR -8 383 177 595 193 55 94 chr1 201627889 201628091 -41036262 - MSTC LTR MaLR -171 194 1 1803 224 50 19 chr1 201628091 201628515 -41035838 - MSTC-int LTR MaLR 0 1735 1299 280 363 29 20 chr1 201629546 201629750 -41034603 + MIR SINE MIR 57 262 0 655 250 0 13 chr1 201629770 201629879 -41034474 - MER63 DNA MER1_type -282 780 671 258 32 0 0 chr1 201629879 201629910 -41034443 + (TG)n Simple_repeat Simple_repeat 2 32 0 655 250 0 13 chr1 201629910 201629956 -41034397 - MER63 DNA MER1_type -391 671 1 201 94 0 0 chr1 201630708 201630740 -41033613 + (GA)n Simple_repeat Simple_repeat 2 33 0 290 326 49 7 chr1 201632156 201632300 -41032053 + MIR SINE MIR 113 262 0 1781 163 21 0 chr1 201632912 201633201 -41031152 + AluSg SINE Alu 2 296 -14 307 282 38 38 chr1 201633709 201633840 -41030513 - MIR SINE MIR -1 261 131 255 347 48 8 chr1 201633821 201633945 -41030408 - L2 LINE L2 0 3313 3185 * 1648 180 3 36 chr1 201634190 201634495 -41029858 + AluJo SINE Alu 1 295 -17 371 232 92 38 chr1 201634833 201635097 -41029256 - L1MC5 LINE L1 -241 7720 7518 33 0 0 0 chr1 201635894 201635927 -41028426 + AT_rich Low_complexity Low_complexity 1 33 0 1163 102 0 0 chr1 201635949 201636096 -41028257 - AluSq/x SINE Alu -165 147 1 27 0 0 0 chr1 201636220 201636247 -41028106 + AT_rich Low_complexity Low_complexity 1 27 0 217 286 0 52 chr1 201637931 201638008 -41026345 - L2 LINE L2 -2 3270 3198 202 371 60 17 chr1 201639548 201639664 -41024689 - MIR3 SINE MIR -80 128 8 1816 164 3 20 chr1 201639911 201640210 -41024143 + AluJo SINE Alu 3 296 -16 393 299 45 6 chr1 201640351 201640508 -41023845 - MER117 DNA MER1_type -31 166 4 183 42 0 0 chr1 201640713 201640737 -41023616 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2309 67 0 73 chr1 201641725 201642055 -41022298 - AluY SINE Alu 0 311 6 22 35 0 0 chr1 201644399 201644428 -41019925 + AT_rich Low_complexity Low_complexity 1 29 0 337 329 96 47 chr1 201645207 201645508 -41018845 + L2 LINE L2 2901 3216 -56 2123 134 36 28 chr1 201646086 201646443 -41017910 + THE1B LTR MaLR 5 364 0 484 255 32 48 chr1 201646590 201646778 -41017575 - LTR16C LTR ERVL -2 489 305 21 36 0 0 chr1 201646924 201646952 -41017401 + AT_rich Low_complexity Low_complexity 1 28 0 4040 154 30 6 chr1 201647419 201648113 -41016240 - MER50 LTR ERV1 -23 711 1 300 312 71 71 chr1 201650056 201650380 -41013973 - L1 LINE L1 -1092 5054 4731 217 218 0 0 chr1 201651464 201651519 -41012834 + (CA)n Simple_repeat Simple_repeat 1 55 0 469 273 0 75 chr1 201652544 201652705 -41011648 + MIR SINE MIR 88 236 -26 351 356 40 7 chr1 201653022 201653171 -41011182 + MIR SINE MIR 59 212 -50 2414 73 3 10 chr1 201653763 201654076 -41010277 + AluY SINE Alu 1 311 0 1565 199 17 10 chr1 201654485 201654786 -41009567 - MLT1A1 LTR MaLR 0 365 63 203 0 37 0 chr1 201654947 201654974 -41009379 + (CAA)n Simple_repeat Simple_repeat 2 29 0 790 190 0 0 chr1 201656815 201656957 -41007396 - FAM SINE Alu -8 41 1 184 271 139 39 chr1 201657062 201657191 -41007162 + L2 LINE L2 2260 2401 -913 890 251 126 62 chr1 201657223 201657674 -41006679 + L2 LINE L2 2829 3308 -5 23 33 0 0 chr1 201658253 201658283 -41006070 + AT_rich Low_complexity Low_complexity 1 30 0 1652 116 67 21 chr1 201659202 201659487 -41004866 - AluSx SINE Alu -14 298 1 647 258 116 27 chr1 201659547 201659772 -41004581 - MIR SINE MIR -12 250 6 3648 45 0 2 chr1 201660614 201661063 -41003290 - L1PA5 LINE L1 0 6154 5707 22 0 0 0 chr1 201661639 201661661 -41002692 + AT_rich Low_complexity Low_complexity 1 22 0 501 277 47 66 chr1 201662307 201662520 -41001833 + MIR SINE MIR 3 211 -51 259 303 11 11 chr1 201664101 201664190 -41000163 + L2 LINE L2 2932 3020 -252 371 299 66 85 chr1 201664859 201665283 -40999070 - HAL1 LINE L1 -1187 1320 905 27 62 0 0 chr1 201665683 201665731 -40998622 + AT_rich Low_complexity Low_complexity 1 48 0 2169 139 100 0 chr1 201665812 201666201 -40998152 - MSTA LTR MaLR 0 428 1 2236 107 0 3 chr1 201666693 201666991 -40997362 + AluSg SINE Alu 1 297 -13 2364 63 7 7 chr1 201667149 201667449 -40996904 - AluY SINE Alu -11 300 1 254 282 0 14 chr1 201667554 201667625 -40996728 - MLT1H LTR MaLR -409 140 71 262 304 54 63 chr1 201667711 201668027 -40996326 - L1ME LINE L1 -289 5832 5520 189 322 23 23 chr1 201668369 201668456 -40995897 + MIR SINE MIR 10 96 -166 2284 159 19 31 chr1 201669252 201669718 -40994635 + MER89 LTR ERV1 1 559 0 191 188 21 0 chr1 201670937 201670985 -40993368 + (TA)n Simple_repeat Simple_repeat 2 50 0 1000 143 6 0 chr1 201671018 201671179 -40993174 - L1PA14 LINE L1 0 6161 6000 2137 120 3 0 chr1 201671430 201671722 -40992631 + AluSx SINE Alu 1 293 -19 243 231 44 22 chr1 201672280 201672371 -40991982 - HAL1 LINE L1 -1015 1492 1400 319 308 51 39 chr1 201672486 201672642 -40991711 - HAL1 LINE L1 -1222 1285 1128 2106 112 7 16 chr1 201672689 201672992 -40991361 - AluSq SINE Alu -13 300 1 188 269 77 0 chr1 201673485 201673537 -40990816 - L2 LINE L2 -1835 1479 1424 800 111 5 4 chr1 201674412 201674630 -40989723 + AluSc SINE Alu 1 302 -7 353 305 38 38 chr1 201674636 201674767 -40989586 - MER5A DNA MER1_type -58 131 1 801 178 38 89 chr1 201675005 201675241 -40989112 + L1MB7 LINE L1 5927 6150 -34 2754 68 120 0 chr1 201675242 201675642 -40988711 - LTR7 LTR ERV1 -2 448 1 2385 104 52 13 chr1 201675642 201676027 -40988326 - HERVH LTR ERV1 0 7713 7314 1350 128 23 14 chr1 201676019 201676237 -40988116 - HERVH LTR ERV1 -1894 5819 5600 * 4527 134 0 1 chr1 201676238 201676901 -40987452 - HERVH LTR ERV1 -2564 5149 4488 3294 100 10 4 chr1 201676903 201677394 -40986959 - HERVH LTR ERV1 -3720 3993 3500 893 142 20 0 chr1 201677393 201677541 -40986812 - HERVH LTR ERV1 -4423 3290 3140 * 16205 103 13 22 chr1 201677535 201680680 -40983673 - HERVH LTR ERV1 -4726 2987 1 2267 109 169 3 chr1 201680682 201681066 -40983287 - LTR7 LTR ERV1 -2 448 1 387 0 0 0 chr1 201681798 201681841 -40982512 + (TG)n Simple_repeat Simple_repeat 1 43 0 22 70 0 0 chr1 201682538 201682581 -40981772 + AT_rich Low_complexity Low_complexity 1 43 0 250 344 92 0 chr1 201682883 201683014 -40981339 - MIR SINE MIR -71 191 49 256 301 0 14 chr1 201683088 201683161 -40981192 - L2 LINE L2 -4 3268 3197 2106 206 39 9 chr1 201684616 201685083 -40979270 - L1MC3 LINE L1 -2 7783 7303 371 252 19 10 chr1 201685109 201685212 -40979141 - MER70B LTR ERVL -19 559 456 1075 181 90 48 chr1 201685638 201685894 -40978459 - L1MC3 LINE L1 -473 7312 7039 1334 208 105 6 chr1 201685894 201686207 -40978146 - MER2 DNA MER2_type 0 344 1 1075 181 90 48 chr1 201686207 201686260 -40978093 - L1MC3 LINE L1 -746 7039 6990 195 162 0 0 chr1 201686262 201686299 -40978054 + (TG)n Simple_repeat Simple_repeat 2 38 0 3573 157 76 4 chr1 201686362 201687062 -40977291 - L1MC1 LINE L1 -18 6315 5566 3205 221 146 91 chr1 201687072 201689237 -40975116 - L1MCa LINE L1 -4122 2304 22 1684 134 81 34 chr1 201691157 201691515 -40972838 - THE1C LTR MaLR 0 375 1 1941 147 0 3 chr1 201692277 201692596 -40971757 - AluSx SINE Alu 0 318 1 269 356 39 0 chr1 201693219 201693323 -40971030 + L2 LINE L2 3160 3267 -5 274 267 41 41 chr1 201693550 201693696 -40970657 - MER103 DNA DNA -1 165 20 1548 42 10 0 chr1 201693731 201693924 -40970429 + L1PA5 LINE L1 5956 6150 -4 204 250 0 0 chr1 201693936 201693984 -40970369 + (TA)n Simple_repeat Simple_repeat 1 48 0 1478 226 29 23 chr1 201694060 201694409 -40969944 + MLT1A1 LTR MaLR 1 351 -14 219 211 0 58 chr1 201696115 201696167 -40968186 + L2 LINE L2 3219 3267 -5 13762 198 39 11 chr1 201696926 201701340 -40963013 + L1PB1 LINE L1 335 5212 -1655 189 0 0 0 chr1 201701340 201701361 -40962992 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 13762 198 39 11 chr1 201701361 201703062 -40961291 + L1PB1 LINE L1 5212 6864 -3 658 151 0 0 chr1 201703088 201703194 -40961159 + AluSq/x SINE Alu 28 133 -179 609 197 44 36 chr1 201703227 201703364 -40960989 + MLT1A1 LTR MaLR 175 312 -53 265 228 147 38 chr1 201703742 201703926 -40960427 + L1ME3A LINE L1 4456 4659 -1487 26 82 0 0 chr1 201704165 201704226 -40960127 + AT_rich Low_complexity Low_complexity 1 61 0 15205 162 44 6 chr1 201704244 201710383 -40953970 - L1MA2 LINE L1 -4 7719 1343 804 296 82 22 chr1 201710629 201711213 -40953140 + L1ME3A LINE L1 5263 5881 -289 319 307 157 43 chr1 201711728 201712073 -40952280 + L2 LINE L2 2930 3313 0 387 301 52 29 chr1 201713602 201713738 -40950615 - MIR SINE MIR -119 143 5 331 329 7 7 chr1 201714556 201714708 -40949645 + (CA)n Simple_repeat Simple_repeat 2 153 0 21 0 0 0 chr1 201714763 201714784 -40949569 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 201714879 201714901 -40949452 + AT_rich Low_complexity Low_complexity 1 22 0 463 271 69 18 chr1 201715165 201715450 -40948903 - L1ME1 LINE L1 -255 5911 5604 245 179 54 0 chr1 201715450 201715506 -40948847 + MER94 DNA DNA 8 66 -68 1626 192 30 18 chr1 201715555 201715894 -40948459 + MLT1A1 LTR MaLR 11 353 -12 731 251 203 5 chr1 201716247 201716642 -40947711 + MER114 LTR ERV 51 523 -125 24 32 0 0 chr1 201716709 201716740 -40947613 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 201717148 201717170 -40947183 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr1 201718452 201718488 -40945865 + AT_rich Low_complexity Low_complexity 1 36 0 267 310 0 23 chr1 201719191 201719278 -40945075 + MER69A DNA AcHobo 6 90 -87 253 321 0 0 chr1 201719354 201719435 -40944918 + (CATATA)n Simple_repeat Simple_repeat 1 81 0 34 65 0 0 chr1 201719575 201719637 -40944716 + AT_rich Low_complexity Low_complexity 1 62 0 1498 119 5 0 chr1 201719839 201720049 -40944304 + AluSq SINE Alu 86 296 -17 260 294 75 19 chr1 201720126 201720286 -40944067 + MLT1H LTR MaLR 30 198 -351 230 284 59 29 chr1 201720457 201720559 -40943794 + HAL1 LINE L1 1374 1478 -1029 248 206 63 0 chr1 201720875 201720938 -40943415 + MIR SINE MIR 175 241 -21 22 35 0 0 chr1 201720941 201720970 -40943383 + AT_rich Low_complexity Low_complexity 1 29 0 754 76 0 17 chr1 201721189 201721307 -40943046 - LTR9B LTR ERV1 -84 560 445 237 33 0 0 chr1 201721630 201721660 -40942693 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 450 0 0 0 chr1 201721659 201721709 -40942644 + (TA)n Simple_repeat Simple_repeat 1 50 0 202 109 0 65 chr1 201721834 201721880 -40942473 + (TA)n Simple_repeat Simple_repeat 2 44 0 309 279 22 15 chr1 201721910 201722046 -40942307 + A-rich Low_complexity Low_complexity 1 137 0 201 143 0 0 chr1 201722450 201722485 -40941868 - L2 LINE L2 0 3313 3279 270 224 17 0 chr1 201722557 201722615 -40941738 - L2 LINE L2 -67 3246 3188 213 299 227 10 chr1 201722987 201723194 -40941159 - L2 LINE L2 -457 2857 2606 318 326 54 33 chr1 201723225 201723409 -40940944 - L3b LINE CR1 -288 1295 1108 505 309 24 0 chr1 201723635 201723800 -40940553 - LTR16A LTR ERVL 0 450 282 2209 148 13 13 chr1 201724886 201725259 -40939094 - MER83C LTR ERV1 0 373 1 1716 181 3 19 chr1 201725414 201725724 -40938629 - AluSx SINE Alu -7 305 1 1021 223 101 21 chr1 201726245 201726779 -40937574 - LTR48B LTR ERV1 -4 640 8 5040 108 0 1 chr1 201726910 201727602 -40936751 - LTR8 LTR ERV1 0 691 1 32 0 0 0 chr1 201728149 201728181 -40936172 + AT_rich Low_complexity Low_complexity 1 32 0 208 206 0 29 chr1 201728356 201728424 -40935929 + (TATG)n Simple_repeat Simple_repeat 3 68 0 242 373 28 75 chr1 201728685 201729114 -40935239 - L2 LINE L2 -564 2750 2342 1273 169 25 12 chr1 201730655 201730957 -40933396 + MER2 DNA MER2_type 1 345 0 307 249 86 140 chr1 201731173 201731266 -40933087 - MIR SINE MIR -14 248 151 1786 160 39 0 chr1 201731266 201731548 -40932805 + AluJb SINE Alu 1 293 -19 307 249 86 140 chr1 201731548 201731711 -40932642 - MIR SINE MIR -111 151 6 228 192 19 19 chr1 201731987 201732039 -40932314 + L2 LINE L2 3217 3268 -4 1579 200 16 17 chr1 201732411 201732518 -40931835 + MER67B LTR ERV1 1 107 -554 4088 131 18 0 chr1 201732518 201733119 -40931234 + LTR9 LTR ERV1 1 612 0 1579 200 16 17 chr1 201733119 201733449 -40930904 + MER67B LTR ERV1 107 409 -252 1194 221 11 22 chr1 201733501 201733768 -40930585 + MER67A LTR ERV1 268 531 -12 255 267 78 0 chr1 201734491 201734581 -40929772 - L1ME LINE L1 -457 5664 5568 1809 187 186 20 chr1 201735116 201735698 -40928655 + MER39 LTR ERV1 1 707 0 268 259 12 59 chr1 201735728 201735813 -40928540 - MIR SINE MIR -124 138 58 464 85 0 0 chr1 201736257 201736360 -40927993 - AluSc SINE Alu 0 326 224 2128 128 0 0 chr1 201736539 201736836 -40927517 - AluSx SINE Alu -15 297 1 2286 108 0 3 chr1 201737979 201738286 -40926067 + AluSc SINE Alu 1 306 -3 473 288 86 17 chr1 201788355 201788588 -40875765 + HAL1 LINE L1 2226 2474 -33 22 35 0 0 chr1 201788592 201788621 -40875732 + AT_rich Low_complexity Low_complexity 1 29 0 2439 82 13 0 chr1 201788642 201788948 -40875405 - AluSg SINE Alu 0 310 1 688 197 48 108 chr1 201789879 201790128 -40874225 + MER106A DNA MER1_type 3 236 0 2107 67 4 0 chr1 201790433 201790701 -40873652 - AluY SINE Alu -9 302 34 216 196 22 0 chr1 201791221 201791267 -40873086 + L2 LINE L2 3267 3313 0 355 176 15 0 chr1 201791473 201791541 -40872812 + AluJ/FLAM SINE Alu 1 69 -233 1179 189 69 45 chr1 201791862 201792196 -40872157 + MER2 DNA MER2_type 3 344 0 386 214 101 0 chr1 201792416 201792505 -40871848 + L2 LINE L2 3205 3302 -11 321 343 41 24 chr1 201792916 201793085 -40871268 + MER5A DNA MER1_type 15 186 -3 537 132 0 0 chr1 201793101 201793183 -40871170 + (GA)n Simple_repeat Simple_repeat 1 85 -6 2323 56 28 3 chr1 201793183 201793468 -40870885 + AluY SINE Alu 3 294 -17 537 132 0 0 chr1 201793468 201793476 -40870877 + (GA)n Simple_repeat Simple_repeat 84 91 0 1309 40 23 0 chr1 201793476 201793650 -40870703 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 357 43 0 0 chr1 201793877 201793924 -40870429 + (TA)n Simple_repeat Simple_repeat 2 48 0 930 210 105 0 chr1 201794966 201795166 -40869187 - MER58A DNA MER1_type -3 221 1 358 309 112 26 chr1 201795741 201796129 -40868224 + L1ME LINE L1 4197 4615 -1531 186 150 0 0 chr1 201796309 201796349 -40868004 + (A)n Simple_repeat Simple_repeat 1 40 0 269 276 17 26 chr1 201796496 201796612 -40867741 + L1ME LINE L1 5467 5581 -540 2409 93 0 3 chr1 201796884 201797196 -40867157 + AluY SINE Alu 1 311 0 2341 88 0 3 chr1 201797583 201797877 -40866476 + AluSg SINE Alu 1 293 -17 532 291 161 14 chr1 201798377 201798600 -40865753 + MIR SINE MIR 2 257 -5 1392 210 7 4 chr1 201799071 201799347 -40865006 + AluJo SINE Alu 6 282 -30 1032 200 0 6 chr1 201801225 201801400 -40862953 + FAM SINE Alu 1 174 -1 207 137 59 20 chr1 201802123 201802174 -40862179 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1190 221 156 41 chr1 201802371 201802787 -40861566 - MLT1D LTR MaLR -41 464 1 236 329 73 37 chr1 201802868 201803032 -40861321 - L3 LINE CR1 -150 1427 1258 492 290 35 39 chr1 201804288 201804519 -40859834 - LTR16B LTR ERVL -13 451 222 2560 239 92 16 chr1 201804567 201805307 -40859046 - MER21B LTR ERV1 -48 815 20 4020 153 45 50 chr1 201805307 201805650 -40858703 + Tigger3b DNA MER2_type 1 344 -2684 1827 123 4 0 chr1 201805650 201805901 -40858452 - AluSp SINE Alu -61 252 1 4020 153 45 50 chr1 201805901 201806461 -40857892 + Tigger3b DNA MER2_type 344 900 -331 1116 184 198 31 chr1 201806448 201806802 -40857551 - LOR1b LTR ERV1 -48 413 1 * 2005 151 29 6 chr1 201806804 201807155 -40857198 + Tigger3b DNA MER2_type 873 1231 0 530 268 55 21 chr1 201807673 201807872 -40856481 + MIR SINE MIR 41 238 -24 555 284 139 15 chr1 201810476 201810677 -40853676 - MIR SINE MIR -5 257 32 221 247 118 0 chr1 201813852 201813937 -40850416 + MIR SINE MIR 137 231 -31 285 212 146 7 chr1 201814312 201814449 -40849904 - L1ME4a LINE L1 -2 6119 5964 959 217 5 0 chr1 201814500 201814712 -40849641 - L1MB1 LINE L1 -62 6106 5894 2217 125 0 10 chr1 201814758 201815062 -40849291 + AluSx SINE Alu 1 301 -11 571 289 60 8 chr1 201815340 201815575 -40848778 + MLT1H1 LTR MaLR 1 247 -308 406 213 0 0 chr1 201816504 201816579 -40847774 - MER8 DNA MER2_type 0 239 165 1921 180 16 58 chr1 201816602 201816748 -40847605 + Tigger2 DNA MER2_type 2303 2454 -264 2270 113 0 3 chr1 201816748 201817058 -40847295 - AluSx SINE Alu -3 309 1 1921 180 16 58 chr1 201817058 201817345 -40847008 + Tigger2 DNA MER2_type 2454 2718 0 24 53 0 0 chr1 201817366 201817404 -40846949 + AT_rich Low_complexity Low_complexity 1 38 0 733 189 8 0 chr1 201817404 201817526 -40846827 - FLAM_C SINE Alu -20 123 1 214 342 62 39 chr1 201817550 201817740 -40846613 - MIR3 SINE MIR -57 205 14 21 36 0 0 chr1 201817978 201818006 -40846347 + AT_rich Low_complexity Low_complexity 1 28 0 2322 86 0 0 chr1 201818070 201818362 -40845991 - AluSg SINE Alu -18 292 1 223 240 74 120 chr1 201820524 201820699 -40843654 - MIR SINE MIR -7 255 89 2059 115 31 0 chr1 201820837 201821124 -40843229 + AluSx SINE Alu 3 298 -14 203 179 0 0 chr1 201823246 201823285 -40841068 + T-rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr1 201824004 201824025 -40840328 + (TG)n Simple_repeat Simple_repeat 2 22 0 2240 111 0 3 chr1 201828186 201828493 -40835860 + AluY SINE Alu 3 308 -3 217 314 111 26 chr1 201828667 201828820 -40835533 + MIR SINE MIR 68 233 -29 215 238 25 25 chr1 201829311 201829391 -40834962 + MIR SINE MIR 180 259 -3 2231 75 0 0 chr1 201829473 201829753 -40834600 + AluY SINE Alu 30 309 -2 24 0 0 0 chr1 201830245 201830269 -40834084 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr1 201830600 201830624 -40833729 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr1 201830852 201830888 -40833465 + AT_rich Low_complexity Low_complexity 1 36 0 401 307 148 5 chr1 201830928 201831117 -40833236 - MIR SINE MIR -30 232 17 1026 164 0 17 chr1 201831344 201831521 -40832832 - AluJo SINE Alu -54 258 85 593 246 0 0 chr1 201831521 201831635 -40832718 - FRAM SINE Alu -62 114 1 525 262 117 44 chr1 201831804 201832308 -40832045 + L1ME4a LINE L1 5534 6074 -47 217 229 164 0 chr1 201832786 201832847 -40831506 + L2 LINE L2 3151 3221 -51 2163 113 0 10 chr1 201832988 201833290 -40831063 - AluSx SINE Alu -9 303 5 1323 212 33 43 chr1 201833471 201833868 -40830485 + MLT1C LTR MaLR 65 457 -10 2076 236 35 34 chr1 201834700 201835383 -40828970 - MER76 LTR ERV 0 688 5 200 111 28 0 chr1 201835389 201835425 -40828928 + T-rich Low_complexity Low_complexity 4 40 0 1251 85 11 0 chr1 201836004 201836181 -40828172 + L1PA10 LINE L1 5835 6013 -155 1323 126 5 0 chr1 201836283 201836481 -40827872 + L1PA10 LINE L1 5969 6167 -1 273 231 153 48 chr1 201836481 201836776 -40827577 + L1MC/D LINE L1 4751 5076 -1070 22 0 0 0 chr1 201837171 201837193 -40827160 + AT_rich Low_complexity Low_complexity 1 22 0 351 329 136 5 chr1 201837678 201837891 -40826462 + L1MC/D LINE L1 5344 5584 -2224 206 258 22 67 chr1 201838083 201838172 -40826181 + L2 LINE L2 3227 3311 -2 473 16 0 33 chr1 201839104 201839165 -40825188 - AluY SINE Alu -181 130 72 1975 132 0 6 chr1 201839165 201839484 -40824869 - THE1C LTR MaLR -58 317 1 970 329 34 22 chr1 201839959 201840034 -40824319 - L2 LINE L2 -3 3310 3237 216 0 0 0 chr1 201840034 201840058 -40824295 + (TC)n Simple_repeat Simple_repeat 2 25 0 970 329 34 22 chr1 201840058 201840399 -40823954 - L2 LINE L2 -76 3237 2889 2186 92 3 30 chr1 201841286 201841589 -40822764 + AluSg SINE Alu 1 295 -15 275 309 31 0 chr1 201842059 201842156 -40822197 + L2 LINE L2 3153 3252 -20 224 238 16 48 chr1 201843347 201843410 -40820943 + MER5A DNA MER1_type 20 80 -109 279 0 0 0 chr1 201843601 201843632 -40820721 + (CA)n Simple_repeat Simple_repeat 1 31 0 186 118 0 0 chr1 201844007 201844041 -40820312 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 594 352 141 5 chr1 201844045 201844443 -40819910 - L2 LINE L2 -37 3276 2825 1046 209 34 20 chr1 201844465 201844757 -40819596 + MER33 DNA MER1_type 1 296 -28 2248 116 22 6 chr1 201844918 201845273 -40819080 - THE1C LTR MaLR -12 363 3 628 265 81 38 chr1 201845275 201845796 -40818557 - HAL1 LINE L1 -1212 1295 753 252 86 0 0 chr1 201846112 201846147 -40818206 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 360 45 16 chr1 201847239 201847550 -40816803 + LTR16C LTR ERVL 164 483 -8 417 350 56 17 chr1 201847747 201847927 -40816426 + MIR3 SINE MIR 19 205 -3 1346 147 3 89 chr1 201849010 201849304 -40815049 + AluSx SINE Alu 16 325 0 321 0 0 24 chr1 201849304 201849345 -40815008 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 1792 251 81 33 chr1 201850521 201851166 -40813187 + L1ME1 LINE L1 5357 6032 -134 * 4921 108 22 0 chr1 201851160 201851927 -40812426 - L1PA13 LINE L1 -3 6160 5377 2266 63 3 0 chr1 201851943 201852229 -40812124 + L1PA7 LINE L1 5867 6153 -1 2232 100 3 10 chr1 201853195 201853494 -40810859 + AluSp SINE Alu 1 297 -16 663 197 0 24 chr1 201853603 201853730 -40810623 - FLAM_A SINE Alu -8 125 2 389 301 130 62 chr1 201853730 201854085 -40810268 + MLT1J LTR MaLR 11 389 -122 279 213 0 0 chr1 201854863 201854938 -40809415 + L1M4 LINE L1 4479 4553 -1593 1789 221 35 25 chr1 201855562 201856045 -40808308 + LTR33 LTR ERVL 33 520 -1 210 71 0 0 chr1 201856725 201856753 -40807600 + (T)n Simple_repeat Simple_repeat 1 28 0 634 247 6 12 chr1 201856770 201856932 -40807421 + MER63A DNA MER1_type 1 161 0 923 9 0 0 chr1 201856932 201857042 -40807311 - L1P1 LINE L1 -567 5588 5479 1269 38 5 75 chr1 201857045 201857231 -40807122 + L1PA4 LINE L1 5982 6154 -1 300 220 0 0 chr1 201857255 201857314 -40807039 + MER63A DNA MER1_type 152 210 0 256 318 0 0 chr1 201857845 201857908 -40806445 + L2 LINE L2 3210 3272 0 2110 125 0 0 chr1 201858208 201858495 -40805858 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr1 201858514 201858535 -40805818 + AT_rich Low_complexity Low_complexity 1 21 0 316 204 41 0 chr1 201858728 201858826 -40805527 + GA-rich Low_complexity Low_complexity 2 103 0 202 300 0 0 chr1 201858862 201858912 -40805441 + GA-rich Low_complexity Low_complexity 3 52 0 24 32 0 0 chr1 201859138 201859169 -40805184 + AT_rich Low_complexity Low_complexity 1 31 0 29 43 0 43 chr1 201859350 201859379 -40804974 + AT_rich Low_complexity Low_complexity 1 30 -36 1917 91 42 4 chr1 201859379 201859644 -40804709 + AluSx SINE Alu 1 275 -37 29 43 0 43 chr1 201859644 201859683 -40804670 + AT_rich Low_complexity Low_complexity 30 66 0 232 241 0 0 chr1 201860451 201860505 -40803848 - L1ME LINE L1 -628 5536 5483 429 311 14 7 chr1 201860800 201860948 -40803405 + MER69A DNA AcHobo 29 177 0 319 286 57 9 chr1 201860955 201861060 -40803293 - L3 LINE CR1 0 1577 1468 205 241 51 51 chr1 201861094 201861173 -40803180 + MIR SINE MIR 111 189 -73 202 341 80 36 chr1 201861255 201861393 -40802960 - L3 LINE CR1 -97 1480 1337 2274 106 0 7 chr1 201861461 201861763 -40802590 - AluSx SINE Alu -12 300 1 501 248 64 46 chr1 201862196 201862414 -40801939 - L1ME3 LINE L1 -9 6222 6001 628 212 61 24 chr1 201862446 201862658 -40801695 - L1ME3 LINE L1 -1307 4908 4689 412 288 35 18 chr1 201862669 201862898 -40801455 - L1ME3 LINE L1 -4128 2268 2036 493 274 113 38 chr1 201863028 201863481 -40800872 - L1ME3 LINE L1 -4576 1820 1334 902 165 76 0 chr1 201863481 201863639 -40800714 - THE1B LTR MaLR 0 364 195 191 360 73 22 chr1 201863808 201863944 -40800409 + L2 LINE L2 3107 3249 -23 1397 180 4 16 chr1 201863986 201864242 -40800111 + AluJo SINE Alu 35 287 -25 375 242 135 51 chr1 201864269 201864484 -40799869 - L1ME4a LINE L1 -7 6114 5882 2188 98 0 0 chr1 201865014 201865301 -40799052 + AluY SINE Alu 1 287 -24 361 138 21 0 chr1 201865301 201865395 -40798958 + (TA)n Simple_repeat Simple_repeat 1 96 0 2345 91 0 7 chr1 201865864 201866161 -40798192 - AluSx SINE Alu -17 295 1 2357 77 3 10 chr1 201866977 201867289 -40797064 - AluSg SINE Alu 0 310 1 222 150 0 0 chr1 201867668 201867708 -40796645 + (TC)n Simple_repeat Simple_repeat 1 40 0 448 213 49 41 chr1 201867725 201867847 -40796506 + L2 LINE L2 3191 3313 0 379 324 87 91 chr1 201867815 201868265 -40796088 - L2 LINE L2 -8 3264 2817 * 4155 91 3 7 chr1 201868401 201868994 -40795359 + L1PB1 LINE L1 5561 6151 0 186 198 89 109 chr1 201869094 201869195 -40795158 - L2 LINE L2 -812 2502 2404 657 313 42 46 chr1 201872015 201872698 -40791655 + L1MCc LINE L1 1171 1855 -5086 1665 194 0 3 chr1 201872698 201872987 -40791366 + AluSx SINE Alu 1 288 -24 360 0 0 0 chr1 201872988 201873028 -40791325 + (CA)n Simple_repeat Simple_repeat 1 40 0 657 313 42 46 chr1 201873028 201873286 -40791067 + L1MCc LINE L1 1854 2117 -4824 3274 153 18 3 chr1 201873309 201873877 -40790476 - MER7C DNA MER2_type -13 589 14 410 298 84 13 chr1 201873892 201874117 -40790236 + L1MCc LINE L1 2314 2554 -4568 347 299 119 21 chr1 201874245 201874342 -40790011 - MIR SINE MIR 0 262 176 2502 77 0 6 chr1 201874342 201874655 -40789698 - AluY SINE Alu 0 311 1 347 299 119 21 chr1 201874655 201874751 -40789602 - MIR SINE MIR -86 176 50 227 295 49 33 chr1 201874789 201874972 -40789381 + L1MC/D LINE L1 5704 5889 -1919 212 311 0 0 chr1 201874997 201875058 -40789295 + (CATA)n Simple_repeat Simple_repeat 4 64 0 310 143 79 0 chr1 201875930 201875993 -40788360 - THE1B LTR MaLR -296 68 1 367 19 19 19 chr1 201876043 201876096 -40788257 + (TC)n Simple_repeat Simple_repeat 2 54 0 325 249 144 10 chr1 201876293 201876356 -40787997 - L1MEc LINE L1 -5465 931 878 633 27 0 0 chr1 201876356 201876431 -40787922 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 325 249 144 10 chr1 201876431 201876568 -40787785 - L1MEc LINE L1 -5518 878 704 365 330 65 82 chr1 201876716 201877252 -40787101 - L1MEc LINE L1 -5835 561 35 512 351 142 25 chr1 201877270 201877862 -40786491 - L3 LINE CR1 -709 868 208 264 234 11 43 chr1 201878550 201878644 -40785709 + T-rich Low_complexity Low_complexity 4 94 0 447 52 0 0 chr1 201878790 201878848 -40785505 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 396 0 0 0 chr1 201878925 201878969 -40785384 + (TG)n Simple_repeat Simple_repeat 2 45 0 210 174 0 0 chr1 201879577 201879623 -40784730 + GA-rich Low_complexity Low_complexity 1 46 0 320 336 148 22 chr1 201880427 201880656 -40783697 - L1ME LINE L1 -522 5599 5342 2295 86 3 3 chr1 201880893 201881185 -40783168 + AluSc SINE Alu 1 292 -17 184 358 119 8 chr1 201881979 201882113 -40782240 + L2 LINE L2 1781 1929 -1385 394 77 231 0 chr1 201882409 201882474 -40781879 + MADE1 DNA Mariner 1 80 0 1653 128 4 4 chr1 201884721 201884956 -40779397 + AluSq SINE Alu 1 235 -78 597 339 35 45 chr1 201885667 201885977 -40778376 + L2 LINE L2 2966 3272 0 2447 163 24 2 chr1 201887230 201887647 -40776706 - MSTB LTR MaLR 0 426 1 864 164 0 0 chr1 201887698 201887832 -40776521 + FRAM SINE Alu 1 133 -43 215 350 100 20 chr1 201888774 201888874 -40775479 - MIR SINE MIR -56 152 45 23 33 0 0 chr1 201889313 201889343 -40775010 + AT_rich Low_complexity Low_complexity 1 30 0 1210 196 50 121 chr1 201889616 201890076 -40774277 - MER66A LTR ERV1 0 478 97 2596 102 33 0 chr1 201890324 201890715 -40773638 - L1PA10 LINE L1 0 6168 5765 448 304 134 5 chr1 201891379 201891580 -40772773 + MIR SINE MIR 36 262 0 228 314 145 8 chr1 201892094 201892218 -40772135 + MIR SINE MIR 57 197 -65 306 0 0 0 chr1 201892292 201892326 -40772027 + (TG)n Simple_repeat Simple_repeat 2 35 0 188 341 155 8 chr1 201895023 201895152 -40769201 - L2 LINE L2 -181 3091 2944 190 340 0 0 chr1 201895163 201895210 -40769143 - L2 LINE L2 -2 3270 3224 276 196 18 0 chr1 201895323 201895379 -40768974 + MLT1L LTR MaLR 7 63 -532 10733 199 51 62 chr1 201895422 201895944 -40768409 + L1PB1 LINE L1 2212 2738 -4055 3319 63 20 2 chr1 201895944 201896402 -40767951 + L1PA4 LINE L1 5689 6154 -1 10733 199 51 62 chr1 201896402 201896487 -40767866 + L1PB1 LINE L1 2738 2822 -3971 180 0 0 0 chr1 201896487 201896507 -40767846 + (CAA)n Simple_repeat Simple_repeat 2 21 0 10733 199 51 62 chr1 201896507 201897349 -40767004 + L1PB1 LINE L1 2822 3672 -3121 1408 96 0 16 chr1 201897349 201897536 -40766817 + AluY SINE Alu 1 184 -127 10733 199 51 62 chr1 201897536 201900566 -40763787 + L1PB1 LINE L1 3672 6785 -8 182 270 63 0 chr1 201900603 201900666 -40763687 + MIR SINE MIR 81 147 -61 432 0 0 0 chr1 201900762 201900810 -40763543 + (ATG)n Simple_repeat Simple_repeat 2 49 0 1879 158 72 23 chr1 201900810 201901157 -40763196 + THE1B LTR MaLR 1 364 0 10965 106 19 1 chr1 201901157 201902708 -40761645 + THE1B-int LTR MaLR 1 1580 0 1340 99 68 54 chr1 201902708 201902929 -40761424 + THE1B LTR MaLR 1 224 -140 2068 101 11 4 chr1 201904724 201905002 -40759351 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr1 201905002 201905023 -40759330 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 340 328 40 11 chr1 201905139 201905316 -40759037 + MLT1L LTR MaLR 145 326 -289 1817 119 24 10 chr1 201905457 201905751 -40758602 - AluSp SINE Alu -15 298 1 321 276 10 10 chr1 201907475 201907573 -40756780 + CT-rich Low_complexity Low_complexity 3 100 0 433 331 72 75 chr1 201907574 201907988 -40756365 - L1MEd LINE L1 -5705 414 2 4433 232 29 10 chr1 201908212 201909613 -40754740 - L1MC/D LINE L1 -766 5380 4063 21 0 0 0 chr1 201910219 201910240 -40754113 + AT_rich Low_complexity Low_complexity 1 21 0 273 128 0 0 chr1 201910931 201910978 -40753375 + (TC)n Simple_repeat Simple_repeat 1 47 0 289 351 139 0 chr1 201911205 201911356 -40752997 + MIR SINE MIR 84 255 -7 256 255 54 98 chr1 201911436 201911570 -40752783 + MIR SINE MIR 51 176 -86 3277 153 8 13 chr1 201911570 201912100 -40752253 + MER1A DNA MER1_type 1 527 0 256 255 54 98 chr1 201912100 201912149 -40752204 + MIR SINE MIR 176 226 -36 474 266 85 22 chr1 201912152 201912348 -40752005 - MIR SINE MIR -33 229 20 1988 106 0 0 chr1 201912761 201913046 -40751307 + AluSg SINE Alu 29 313 0 1214 48 0 0 chr1 201914649 201914794 -40749559 - AluY SINE Alu -2 309 165 12200 50 80 4 chr1 201914895 201916500 -40747853 - L1P LINE L1 -4407 1739 13 2434 109 8 34 chr1 201917326 201917537 -40746816 - THE1C LTR MaLR 0 375 177 2034 130 20 0 chr1 201917537 201917838 -40746515 + AluSq SINE Alu 1 307 -6 2434 109 8 34 chr1 201917838 201918011 -40746342 - THE1C LTR MaLR -198 177 1 2027 141 7 0 chr1 201918125 201918416 -40745937 + AluSx SINE Alu 1 293 -19 330 223 85 54 chr1 201918761 201918891 -40745462 + MIR SINE MIR 120 253 -9 510 143 181 9 chr1 201919028 201919133 -40745220 - L2 LINE L2 -4 3309 3187 1729 157 165 5 chr1 201921285 201921654 -40742699 - MSTA LTR MaLR 0 428 1 195 358 128 20 chr1 201921911 201922115 -40742238 + MIR SINE MIR 36 261 -1 289 235 12 24 chr1 201922127 201922212 -40742141 + GA-rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr1 201922641 201922662 -40741691 + AT_rich Low_complexity Low_complexity 1 21 0 1689 184 16 60 chr1 201923620 201923707 -40740646 + MER7A DNA MER2_type 1 90 -2948 1635 156 57 11 chr1 201923707 201923990 -40740363 - AluJb SINE Alu -10 302 7 1689 184 16 60 chr1 201923990 201924266 -40740087 + MER7A DNA MER2_type 90 346 0 785 172 33 40 chr1 201925095 201925246 -40739107 + MER6 DNA MER2_type 1 150 -715 293 81 0 0 chr1 201925249 201925286 -40739067 + MER6 DNA MER2_type 829 865 0 1996 148 0 3 chr1 201925581 201925891 -40738462 - AluJb SINE Alu -3 309 1 22 35 0 0 chr1 201926262 201926291 -40738062 + AT_rich Low_complexity Low_complexity 1 29 0 294 351 139 19 chr1 201926586 201926794 -40737559 - MIR SINE MIR -18 244 12 2431 69 0 3 chr1 201927583 201927886 -40736467 - AluY SINE Alu -9 302 1 1547 178 65 3 chr1 201927886 201928179 -40736174 - MER58B DNA MER1_type -7 334 24 187 313 188 0 chr1 201929022 201929118 -40735235 + MIR SINE MIR 90 203 -59 1544 117 42 4 chr1 201929318 201929557 -40734796 + L1PB3 LINE L1 5905 6152 -2 261 317 88 23 chr1 201930312 201930483 -40733870 + MIR SINE MIR 38 214 -48 22 35 0 0 chr1 201930926 201930955 -40733398 + AT_rich Low_complexity Low_complexity 1 29 0 801 276 16 36 chr1 201931269 201931519 -40732834 + MIR SINE MIR 1 245 -17 203 254 182 18 chr1 201931551 201931606 -40732747 + MIR SINE MIR 22 85 -177 2317 111 48 20 chr1 201932973 201933325 -40731028 - THE1B LTR MaLR -2 362 1 1849 141 20 36 chr1 201933452 201933756 -40730597 + AluSx SINE Alu 1 299 -13 2219 106 3 28 chr1 201935220 201935541 -40728812 - AluSp SINE Alu 0 313 1 436 120 23 59 chr1 201936203 201936603 -40727750 + (TA)n Simple_repeat Simple_repeat 1 385 0 1078 209 51 0 chr1 201936611 201936707 -40727646 - AluJb SINE Alu -82 230 140 320 0 0 24 chr1 201936707 201936748 -40727605 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1078 209 51 0 chr1 201936748 201936866 -40727487 - AluJb SINE Alu -172 140 5 23 33 0 0 chr1 201937325 201937355 -40726998 + AT_rich Low_complexity Low_complexity 1 30 0 1619 174 4 4 chr1 201937980 201938245 -40726108 - AluSx SINE Alu -24 288 24 356 192 192 10 chr1 201938380 201938484 -40725869 - L2 LINE L2 0 3313 3191 231 36 0 0 chr1 201938532 201938560 -40725793 + (TG)n Simple_repeat Simple_repeat 1 28 0 23 68 0 0 chr1 201938592 201938636 -40725717 + AT_rich Low_complexity Low_complexity 1 44 0 2325 108 0 0 chr1 201938801 201939107 -40725246 - AluSg SINE Alu -4 306 1 2278 174 58 15 chr1 201939508 201939974 -40724379 + MER66B LTR ERV1 1 486 0 36 0 0 0 chr1 201941040 201941076 -40723277 + AT_rich Low_complexity Low_complexity 1 36 0 6061 97 54 0 chr1 201941559 201942482 -40721871 - L1PA10 LINE L1 -11 6157 5225 312 274 94 8 chr1 201942730 201942847 -40721506 + L2 LINE L2 2901 3027 -245 281 227 72 0 chr1 201944608 201944705 -40719648 - L1ME LINE L1 -264 5857 5754 231 200 36 0 chr1 201944738 201944793 -40719560 + L1MC4 LINE L1 6655 6711 -1331 720 296 72 82 chr1 201944883 201945521 -40718832 + L2 LINE L2 2301 2932 -382 356 281 70 38 chr1 201945749 201945934 -40718419 + L2 LINE L2 3123 3313 0 24 0 0 0 chr1 201946657 201946681 -40717672 + AT_rich Low_complexity Low_complexity 1 24 0 2187 110 10 0 chr1 201946687 201946988 -40717365 + AluSq SINE Alu 1 304 -9 1373 208 136 45 chr1 201948915 201949377 -40714976 - MLT1D LTR MaLR 0 505 2 1797 142 19 16 chr1 201949983 201950292 -40714061 - AluJo SINE Alu -2 310 1 708 156 25 8 chr1 201951276 201951398 -40712955 + FLAM_A SINE Alu 5 128 -5 2055 158 33 22 chr1 201952283 201952643 -40711710 + THE1B LTR MaLR 1 364 0 245 263 114 26 chr1 201953238 201953352 -40711001 + MIR SINE MIR 67 190 -72 2190 123 27 27 chr1 201954126 201954501 -40709852 + THE1C LTR MaLR 1 375 0 285 295 110 56 chr1 201955046 201955365 -40708988 + HAL1 LINE L1 511 846 -1661 523 233 48 34 chr1 201955395 201955541 -40708812 + HAL1 LINE L1 1278 1425 -1082 211 341 32 8 chr1 201956042 201956165 -40708188 - MIR SINE MIR -1 261 136 708 287 57 65 chr1 201958222 201958802 -40705551 + L2 LINE L2 2652 3222 -91 376 183 16 24 chr1 201958803 201958929 -40705424 + CT-rich Low_complexity Low_complexity 3 127 0 231 245 19 0 chr1 201958931 201958984 -40705369 + L2 LINE L2 3255 3308 -5 1764 171 31 70 chr1 201959880 201960295 -40704058 - L1MB2 LINE L1 -16 6155 5757 1554 183 17 20 chr1 201960540 201960655 -40703698 + AluJo SINE Alu 1 115 -197 402 21 0 0 chr1 201960655 201960702 -40703651 + (CA)n Simple_repeat Simple_repeat 2 48 0 1554 183 17 20 chr1 201960702 201960887 -40703466 + AluJo SINE Alu 115 300 -12 183 235 0 0 chr1 201961297 201961348 -40703005 + CT-rich Low_complexity Low_complexity 2 52 0 30 0 0 0 chr1 201961390 201961420 -40702933 + AT_rich Low_complexity Low_complexity 1 30 0 359 324 71 24 chr1 201962483 201962736 -40701617 + MARNA DNA Mariner 281 545 -41 198 325 46 77 chr1 201962784 201962978 -40701375 - MER5A DNA MER1_type 0 189 2 183 273 0 0 chr1 201963156 201963200 -40701153 + L2 LINE L2 3268 3311 -2 353 362 43 6 chr1 201963215 201963378 -40700975 - L3 LINE CR1 -1101 476 308 765 242 24 121 chr1 201963811 201964100 -40700253 - MIR SINE MIR 0 262 2 432 0 0 0 chr1 201964340 201964388 -40699965 + (CA)n Simple_repeat Simple_repeat 1 48 0 304 300 11 0 chr1 201964780 201964870 -40699483 + L1MC4 LINE L1 6614 6704 -1338 321 319 118 2 chr1 201965383 201965509 -40698844 - MIR SINE MIR -61 147 13 539 289 81 9 chr1 201965722 201965933 -40698420 - MIR SINE MIR -35 227 2 221 310 58 29 chr1 201966562 201966733 -40697620 + L2 LINE L2 2201 2376 -938 637 350 51 11 chr1 201966757 201967108 -40697245 + L2 LINE L2 2574 2938 -376 270 296 152 30 chr1 201967459 201967591 -40696762 - L2 LINE L2 0 3272 3125 2127 108 24 0 chr1 201968180 201968476 -40695877 - AluSx SINE Alu -1 311 9 315 297 22 0 chr1 201969131 201969222 -40695131 - L1MC4 LINE L1 -1337 6705 6613 240 274 49 69 chr1 201969982 201970084 -40694269 - MIR SINE MIR -91 171 72 184 77 51 0 chr1 201970314 201970353 -40694000 + T-rich Low_complexity Low_complexity 2 42 0 231 283 44 62 chr1 201972406 201972519 -40691834 + L2 LINE L2 3203 3313 0 2097 124 0 0 chr1 201973021 201973312 -40691041 - AluSx SINE Alu -19 293 3 203 274 14 0 chr1 201973539 201973612 -40690741 + (TA)n Simple_repeat Simple_repeat 1 74 0 302 151 14 0 chr1 201973678 201973751 -40690602 + (TA)n Simple_repeat Simple_repeat 1 74 0 312 321 57 47 chr1 201974603 201974815 -40689538 - L3b LINE CR1 -102 1481 1268 780 311 44 53 chr1 201974822 201975163 -40689190 + L3 LINE CR1 761 1098 -479 1793 169 51 100 chr1 201976411 201976919 -40687434 - L1MB8 LINE L1 -48 6130 5648 180 0 0 0 chr1 201977412 201977432 -40686921 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 1584 174 79 34 chr1 201978818 201978893 -40685460 - MER2 DNA MER2_type -1 343 273 2318 101 3 0 chr1 201978893 201979200 -40685153 + AluSp SINE Alu 6 313 0 1584 174 79 34 chr1 201979200 201979452 -40684901 - MER2 DNA MER2_type -71 273 1 21 57 0 0 chr1 201979906 201979941 -40684412 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 201980422 201980443 -40683910 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 201980678 201980706 -40683647 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr1 201981726 201981757 -40682596 + AT_rich Low_complexity Low_complexity 1 31 0 185 196 22 22 chr1 201982488 201982534 -40681819 + MIR SINE MIR 30 75 -133 566 317 128 48 chr1 201983094 201983662 -40680691 + L2 LINE L2 1681 2341 -973 2296 122 22 8 chr1 201983662 201984022 -40680331 - MER47A DNA MER2_type 0 366 2 566 317 128 48 chr1 201984022 201984308 -40680045 + L2 LINE L2 2341 2603 -711 269 266 0 0 chr1 201984353 201984417 -40679936 + LTR33 LTR ERVL 24 87 -434 771 127 30 12 chr1 201984738 201984903 -40679450 + CT-rich Low_complexity Low_complexity 4 171 0 188 285 192 26 chr1 201985648 201985799 -40678554 + MIR SINE MIR 75 250 -12 298 221 47 0 chr1 201986126 201986212 -40678141 + L1MC4 LINE L1 6614 6703 -1339 853 114 0 0 chr1 201986222 201986345 -40678008 - AluY SINE Alu -19 292 170 404 117 36 99 chr1 201986857 201986968 -40677385 - L1MB2 LINE L1 0 6171 6068 1516 172 50 18 chr1 201986992 201987329 -40677024 - L1MB2 LINE L1 -66 6105 5758 21 0 0 0 chr1 201989019 201989040 -40675313 + AT_rich Low_complexity Low_complexity 1 21 0 1873 182 39 0 chr1 201989275 201989610 -40674743 + MER7A DNA MER2_type 1 346 0 1184 200 57 110 chr1 201989988 201990380 -40673973 + Charlie1b DNA MER1_type 34 394 -2367 2077 98 0 0 chr1 201990380 201990654 -40673699 - AluSg SINE Alu -36 274 1 1184 200 57 110 chr1 201990654 201990770 -40673583 + Charlie1b DNA MER1_type 394 515 -8 586 240 87 0 chr1 201991285 201991435 -40672918 + MIR SINE MIR 100 262 0 3037 233 34 28 chr1 201993050 201993979 -40670374 - L1ME1 LINE L1 -5 6972 6045 2570 52 7 3 chr1 201993991 201994301 -40670052 + AluY SINE Alu 1 311 0 978 207 62 4 chr1 201994578 201994743 -40669610 - L1ME1 LINE L1 -1296 5661 5478 237 65 0 0 chr1 201994743 201994774 -40669579 + (TTA)n Simple_repeat Simple_repeat 3 33 0 978 207 62 4 chr1 201994774 201994835 -40669518 - L1ME1 LINE L1 -1479 5478 5422 1193 231 46 37 chr1 201994894 201995501 -40668852 - L1ME1 LINE L1 -4833 2022 1381 2371 70 3 0 chr1 201995738 201996045 -40668308 + AluY SINE Alu 1 308 0 2315 103 6 3 chr1 201996294 201996605 -40667748 - AluSx SINE Alu 0 312 1 2115 136 0 0 chr1 201997015 201997323 -40667030 - AluSx SINE Alu -4 308 1 443 288 93 7 chr1 201998074 201998244 -40666109 - MIR SINE MIR -21 241 60 206 356 104 41 chr1 201998259 201998529 -40665824 - L2 LINE L2 -173 3099 2813 435 243 116 63 chr1 201998590 201998779 -40665574 + MIR SINE MIR 15 213 -49 1553 184 30 16 chr1 201998790 201999094 -40665259 - AluJo SINE Alu -4 308 1 631 269 17 6 chr1 201999917 202000092 -40664261 - MER5B DNA MER1_type -1 177 1 21 0 0 0 chr1 202000457 202000478 -40663875 + AT_rich Low_complexity Low_complexity 1 21 0 1291 198 92 4 chr1 202000583 202000856 -40663497 - AluJb SINE Alu -15 297 1 23 101 0 0 chr1 202000967 202001046 -40663307 + AT_rich Low_complexity Low_complexity 1 79 0 23 0 0 0 chr1 202002021 202002044 -40662309 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 202002588 202002611 -40661742 + AT_rich Low_complexity Low_complexity 1 23 0 255 208 26 26 chr1 202002719 202002796 -40661557 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 1032 288 96 79 chr1 202003358 202003889 -40660464 - MLT1F LTR MaLR -7 535 49 216 0 0 0 chr1 202003892 202003916 -40660437 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1088 187 5 0 chr1 202003923 202004132 -40660221 + MER2 DNA MER2_type 1 210 -135 2234 169 36 5 chr1 202005261 202005676 -40658677 - MSTA LTR MaLR 0 428 1 2224 49 0 0 chr1 202005923 202006188 -40658165 + AluY SINE Alu 35 299 -12 619 143 0 19 chr1 202006213 202006341 -40658012 - Alu SINE Alu 0 310 199 416 264 76 16 chr1 202007132 202007255 -40657098 - MIR SINE MIR -65 143 57 201 138 35 17 chr1 202007585 202007643 -40656710 + GA-rich Low_complexity Low_complexity 2 60 0 204 322 34 51 chr1 202008247 202008424 -40655929 + L2 LINE L2 2719 2892 -422 226 244 374 8 chr1 202010268 202010399 -40653954 + MER5A DNA MER1_type 9 187 -2 237 212 12 59 chr1 202010656 202010741 -40653612 + MER115 DNA AcHobo 347 427 -266 42451 35 1 1 chr1 202011177 202017318 -40647035 + L1PA3 LINE L1 13 6152 -3 216 0 0 0 chr1 202017545 202017569 -40646784 + (A)n Simple_repeat Simple_repeat 1 24 0 402 228 31 37 chr1 202017593 202017755 -40646598 + L1ME LINE L1 5581 5741 -380 234 292 0 0 chr1 202019077 202019142 -40645211 + CT-rich Low_complexity Low_complexity 1 65 0 490 260 7 65 chr1 202019231 202019385 -40644968 - L2 LINE L2 0 3313 3169 434 319 60 48 chr1 202019667 202020018 -40644335 - L2 LINE L2 -449 2865 2511 237 224 20 0 chr1 202020163 202020212 -40644141 - MIR SINE MIR -61 147 98 502 144 0 43 chr1 202020627 202020766 -40643587 + (TTTC)n Simple_repeat Simple_repeat 4 136 0 403 276 33 46 chr1 202020980 202021132 -40643221 + MIR SINE MIR 46 195 -67 1761 137 50 61 chr1 202021594 202021816 -40642537 + THE1C LTR MaLR 1 219 -156 2436 64 3 0 chr1 202021816 202022112 -40642241 + AluY SINE Alu 1 297 -14 1761 137 50 61 chr1 202022112 202022268 -40642085 + THE1C LTR MaLR 219 375 0 241 316 32 0 chr1 202022971 202023066 -40641287 - MIR3 SINE MIR -7 201 104 254 231 259 0 chr1 202023805 202023913 -40640440 + MER5C DNA MER1_type 61 196 -128 194 268 0 0 chr1 202024673 202024714 -40639639 + L2 LINE L2 3217 3257 -15 908 147 102 6 chr1 202025386 202025563 -40638790 - Tigger1 DNA MER2_type -2 2416 2223 41030 31 21 1 chr1 202025563 202031588 -40632765 + L1HS LINE L1 6 6154 -1 3096 30 3 0 chr1 202031602 202031969 -40632384 + L1PA5 LINE L1 5783 6150 -4 12520 128 36 25 chr1 202031970 202034168 -40630185 - Tigger1 DNA MER2_type -194 2224 2 420 330 61 28 chr1 202034318 202034530 -40629823 - L1ME LINE L1 -401 5769 5551 255 160 32 21 chr1 202034575 202034669 -40629684 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 2140 122 0 14 chr1 202035872 202036189 -40628164 + AluSx SINE Alu 1 312 0 246 62 0 0 chr1 202036458 202036490 -40627863 + (A)n Simple_repeat Simple_repeat 1 32 0 1495 170 0 35 chr1 202037052 202037311 -40627042 - AluJo SINE Alu -62 250 1 235 250 26 0 chr1 202038530 202038606 -40625747 - MER116 DNA Mariner 0 80 3 242 333 124 8 chr1 202039469 202039598 -40624755 + MIR SINE MIR 119 262 0 1688 177 0 41 chr1 202040587 202040881 -40623472 - AluJo SINE Alu -30 282 1 489 339 62 22 chr1 202041733 202041957 -40622396 - MIR SINE MIR -21 241 9 27 0 0 0 chr1 202042490 202042517 -40621836 + AT_rich Low_complexity Low_complexity 1 27 0 2351 99 0 0 chr1 202043035 202043337 -40621016 + AluSc SINE Alu 1 302 -7 261 365 26 0 chr1 202044768 202044883 -40619470 - MIR SINE MIR -36 226 109 501 355 27 18 chr1 202045081 202045301 -40619052 - MIR SINE MIR -28 234 13 417 20 0 0 chr1 202045597 202045647 -40618706 + (TA)n Simple_repeat Simple_repeat 2 51 0 2284 88 0 0 chr1 202045647 202045931 -40618422 - AluSx SINE Alu -7 305 22 315 351 76 0 chr1 202046213 202046384 -40617969 - MIR SINE MIR -10 252 69 2498 109 17 3 chr1 202047016 202047375 -40616978 - THE1B LTR MaLR 0 364 1 181 398 65 0 chr1 202047831 202047924 -40616429 + MIR SINE MIR 37 135 -73 830 191 5 31 chr1 202048152 202048346 -40616007 - MER53 DNA DNA 0 189 1 192 347 49 42 chr1 202050049 202050193 -40614160 + MIR SINE MIR 7 151 -111 331 216 10 62 chr1 202050828 202050925 -40613428 + MIR SINE MIR 161 252 -10 298 354 16 8 chr1 202051276 202051403 -40612950 - L2 LINE L2 -8 3264 3137 338 327 113 6 chr1 202051814 202051982 -40612371 + L1ME4a LINE L1 5670 5855 -266 667 217 25 13 chr1 202052052 202052209 -40612144 - MER63A DNA MER1_type 0 210 52 983 199 6 0 chr1 202052319 202052500 -40611853 + MLT1A1 LTR MaLR 156 337 -28 685 295 103 58 chr1 202052523 202052987 -40611366 - L2 LINE L2 -1445 1869 1385 385 309 64 16 chr1 202053199 202053387 -40610966 + MIR SINE MIR 36 232 -30 295 281 53 18 chr1 202053418 202053532 -40610821 + MIR SINE MIR 101 218 -44 288 271 21 0 chr1 202053991 202054087 -40610266 + (TA)n Simple_repeat Simple_repeat 2 99 0 282 185 15 31 chr1 202054127 202054192 -40610161 + L2 LINE L2 3250 3313 0 518 179 0 0 chr1 202054735 202054819 -40609534 + MER5A DNA MER1_type 4 87 -102 3062 73 73 37 chr1 202054824 202055316 -40609037 + LTR61 LTR ERV1 85 594 -1 207 235 309 12 chr1 202055317 202055398 -40608955 + MER5A DNA MER1_type 85 189 0 393 301 180 24 chr1 202055399 202055605 -40608748 + MIR SINE MIR 10 247 -15 299 271 50 118 chr1 202055755 202055916 -40608437 + MIR SINE MIR 26 175 -35 1414 225 21 55 chr1 202056112 202056595 -40607758 - MER31B LTR ERV1 0 661 1 1569 196 3 44 chr1 202057042 202057359 -40606994 - AluJb SINE Alu -8 304 1 2133 128 0 0 chr1 202057492 202057789 -40606564 - AluSx SINE Alu -15 297 1 1893 209 19 21 chr1 202058970 202059401 -40604952 + L1PA16 LINE L1 5717 6146 -20 28 0 0 0 chr1 202059403 202059431 -40604922 + AT_rich Low_complexity Low_complexity 1 28 0 1491 201 9 64 chr1 202059432 202059760 -40604593 + AluJb SINE Alu 1 310 -2 246 341 16 0 chr1 202061433 202061559 -40602794 + MER117 DNA MER1_type 69 196 -1 2174 119 7 0 chr1 202061835 202062128 -40602225 - AluSx SINE Alu -17 295 1 566 193 50 94 chr1 202062559 202062761 -40601592 + MER3 DNA MER1_type 11 203 -6 728 173 60 7 chr1 202062781 202062931 -40601422 - MER105 DNA DNA -20 184 27 1611 178 24 20 chr1 202063053 202063228 -40601125 - AluJo SINE Alu -13 299 121 183 42 0 0 chr1 202063228 202063252 -40601101 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1611 178 24 20 chr1 202063252 202063374 -40600979 - AluJo SINE Alu -191 121 1 1826 151 14 7 chr1 202063692 202063977 -40600376 + AluSx SINE Alu 1 287 -25 664 313 15 5 chr1 202063981 202064176 -40600177 - MIR SINE MIR 0 262 66 2748 178 18 14 chr1 202064522 202065084 -40599269 + L1MC2 LINE L1 5761 6324 -20 244 289 11 0 chr1 202065102 202065192 -40599161 - MER112 DNA MER1_type -85 175 85 351 0 0 0 chr1 202065197 202065236 -40599117 + (TG)n Simple_repeat Simple_repeat 2 40 0 806 172 10 17 chr1 202065843 202066136 -40598217 + CT-rich Low_complexity Low_complexity 1 291 0 395 262 47 47 chr1 202066843 202066992 -40597361 + MER5A DNA MER1_type 38 186 -3 5245 62 5 1 chr1 202068612 202069284 -40595069 - L1PA7 LINE L1 0 6154 5481 2031 110 10 23 chr1 202069284 202069583 -40594770 - AluSx SINE Alu -17 295 1 2019 127 35 0 chr1 202069772 202070112 -40594241 - L1PA16 LINE L1 -11 6155 5804 2090 123 33 0 chr1 202071178 202071480 -40592873 - AluSx SINE Alu 0 312 1 418 158 42 91 chr1 202072881 202073046 -40591307 - L1MC5 LINE L1 -50 7911 7755 1738 252 35 57 chr1 202073175 202073598 -40590755 - L1ME1 LINE L1 -7 6159 5761 1801 116 0 75 chr1 202073598 202073890 -40590463 - AluSx SINE Alu -8 304 35 1738 252 35 57 chr1 202073890 202074275 -40590078 - L1ME1 LINE L1 -405 5761 5369 442 342 61 29 chr1 202074276 202074387 -40589966 - L1MEc LINE L1 -6074 322 216 1372 186 35 14 chr1 202074387 202074677 -40589676 + AluJo SINE Alu 1 296 -16 442 342 61 29 chr1 202074677 202074843 -40589510 - L1MEc LINE L1 -6180 216 36 279 0 0 0 chr1 202075691 202075722 -40588631 + (CA)n Simple_repeat Simple_repeat 2 32 0 1105 166 40 14 chr1 202076994 202077217 -40587136 + MER46A DNA MER2_type 8 236 0 236 320 24 8 chr1 202077217 202077342 -40587011 - L1ME LINE L1 -409 5712 5586 2473 77 0 3 chr1 202077519 202077829 -40586524 + AluY SINE Alu 1 309 -2 190 351 97 18 chr1 202079773 202079887 -40584466 + MIR SINE MIR 84 206 -56 903 226 116 55 chr1 202080520 202080882 -40583471 - MSTD LTR MaLR -12 384 1 417 39 0 0 chr1 202082100 202082151 -40582202 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 25 0 0 0 chr1 202082270 202082295 -40582058 + AT_rich Low_complexity Low_complexity 1 25 0 189 301 123 14 chr1 202082463 202082536 -40581817 + MIR SINE MIR 38 118 -90 265 164 16 16 chr1 202082860 202082921 -40581432 + Charlie8 DNA MER1_type 92 152 -2265 472 268 9 0 chr1 202083023 202083135 -40581218 + MER5B DNA MER1_type 50 162 -16 222 37 0 0 chr1 202083340 202083367 -40580986 + (TAA)n Simple_repeat Simple_repeat 2 28 0 219 69 0 0 chr1 202083791 202083820 -40580533 + (TG)n Simple_repeat Simple_repeat 1 29 0 2709 90 3 0 chr1 202083958 202084312 -40580041 - THE1A LTR MaLR 0 355 1 1630 171 24 20 chr1 202084705 202084997 -40579356 + AluJo SINE Alu 3 295 -17 1475 140 41 7 chr1 202085942 202086213 -40578140 - L1MA6 LINE L1 0 6300 6021 207 286 57 29 chr1 202086251 202086321 -40578032 + L2 LINE L2 3201 3272 0 250 83 0 0 chr1 202087220 202087256 -40577097 + tRNA-Gly-GGC tRNA tRNA 2 37 -37 327 95 5 0 chr1 202087362 202087428 -40576925 + MER20 DNA MER1_type 123 193 -26 1496 97 178 19 chr1 202087503 202087903 -40576450 + AluSg SINE Alu 1 441 0 401 289 18 0 chr1 202088299 202088413 -40575940 + MIR SINE MIR 78 193 -69 2129 145 3 0 chr1 202088632 202088942 -40575411 + AluSx SINE Alu 1 311 -1 221 29 0 57 chr1 202089061 202089096 -40575257 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 181 297 72 87 chr1 202089114 202089309 -40575044 + L2 LINE L2 2552 2743 -571 333 296 60 103 chr1 202089465 202089813 -40574540 + L2 LINE L2 2936 3268 -4 35 41 0 0 chr1 202090187 202090236 -40574117 + AT_rich Low_complexity Low_complexity 1 49 0 1776 170 62 3 chr1 202090740 202091064 -40573289 + MER7A DNA MER2_type 2 342 -4 320 190 63 0 chr1 202091257 202091415 -40572938 + (TA)n Simple_repeat Simple_repeat 2 169 0 378 108 68 14 chr1 202091482 202091630 -40572723 + (TA)n Simple_repeat Simple_repeat 2 157 0 219 122 31 61 chr1 202091642 202091740 -40572613 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 374 118 39 56 chr1 202091754 202091932 -40572421 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 278 117 50 0 chr1 202091932 202091992 -40572361 + (TA)n Simple_repeat Simple_repeat 2 64 0 461 304 9 0 chr1 202092749 202092861 -40571492 - L2 LINE L2 -17 3296 3184 390 69 0 0 chr1 202093110 202093168 -40571185 + (GA)n Simple_repeat Simple_repeat 2 59 0 2011 103 26 39 chr1 202093308 202093620 -40570733 - AluSc SINE Alu -1 308 1 25 0 0 0 chr1 202093901 202093926 -40570427 + AT_rich Low_complexity Low_complexity 1 25 0 278 383 135 26 chr1 202095657 202096004 -40568349 + L3b LINE CR1 1102 1486 -97 867 244 135 16 chr1 202096330 202096649 -40567704 + MLT1A1 LTR MaLR 5 361 -4 25 0 0 0 chr1 202097904 202097929 -40566424 + AT_rich Low_complexity Low_complexity 1 25 0 2256 86 0 3 chr1 202098109 202098401 -40565952 - AluSc SINE Alu -18 291 1 31 0 0 0 chr1 202098734 202098765 -40565588 + AT_rich Low_complexity Low_complexity 1 31 0 363 377 52 0 chr1 202099156 202099310 -40565043 + MIR SINE MIR 23 143 -65 541 353 11 11 chr1 202099467 202099728 -40564625 + MIR SINE MIR 1 261 -1 1861 92 75 20 chr1 202100223 202100528 -40563825 + THE1B LTR MaLR 1 322 -42 189 279 44 15 chr1 202101816 202101884 -40562469 - L2 LINE L2 -3 3269 3200 345 276 46 40 chr1 202102040 202102192 -40562161 - L1ME4a LINE L1 -9 6112 5960 1032 186 72 114 chr1 202102309 202102696 -40561657 + MLT1A2 LTR MaLR 4 374 0 253 313 0 10 chr1 202102742 202102841 -40561512 - L1ME4a LINE L1 -407 5714 5617 980 328 60 19 chr1 202103313 202103731 -40560622 - L3 LINE CR1 0 1577 1143 240 154 77 0 chr1 202103954 202103993 -40560360 + 5S rRNA rRNA 1 42 -79 496 309 108 55 chr1 202104009 202104479 -40559874 - L3 LINE CR1 -494 1083 589 1049 127 0 25 chr1 202105703 202105860 -40558493 - AluSg/x SINE Alu -15 297 145 22 0 0 0 chr1 202107830 202107852 -40556501 + AT_rich Low_complexity Low_complexity 1 22 0 1696 183 0 22 chr1 202108013 202108325 -40556028 + AluJo SINE Alu 3 307 -5 1536 185 146 3 chr1 202108450 202108785 -40555568 - MLT1C LTR MaLR 0 467 85 224 208 34 40 chr1 202109115 202109264 -40555089 + (TTATA)n Simple_repeat Simple_repeat 5 152 0 28 61 0 0 chr1 202109298 202109347 -40555006 + AT_rich Low_complexity Low_complexity 1 49 0 365 311 0 0 chr1 202109711 202109960 -40554393 + (CA)n Simple_repeat Simple_repeat 1 249 0 250 381 79 0 chr1 202110097 202110286 -40554067 + MIR SINE MIR 4 207 -55 644 297 135 18 chr1 202111250 202111583 -40552770 + L2 LINE L2 2395 2766 -548 249 336 37 51 chr1 202111593 202111807 -40552546 + L2 LINE L2 3047 3257 -56 258 32 0 0 chr1 202111825 202111856 -40552497 + (T)n Simple_repeat Simple_repeat 1 31 0 375 332 150 30 chr1 202112287 202112660 -40551693 + L2 LINE L2 2874 3291 -22 22 56 0 0 chr1 202112956 202112992 -40551361 + AT_rich Low_complexity Low_complexity 1 36 0 344 254 16 8 chr1 202113282 202113404 -40550949 + (TA)n Simple_repeat Simple_repeat 1 123 0 288 222 40 40 chr1 202114082 202114181 -40550172 + L2 LINE L2 2991 3089 -183 34 79 0 0 chr1 202114633 202114709 -40549644 + AT_rich Low_complexity Low_complexity 1 76 0 1124 183 22 48 chr1 202114861 202115091 -40549262 - AluJo SINE Alu -15 297 74 21 57 0 0 chr1 202115329 202115364 -40548989 + AT_rich Low_complexity Low_complexity 1 35 0 366 345 14 42 chr1 202116333 202116475 -40547878 + MIR3 SINE MIR 2 139 -69 413 271 39 16 chr1 202116873 202117002 -40547351 - MER94 DNA DNA -2 132 1 292 299 67 74 chr1 202117320 202117959 -40546394 - L2 LINE L2 0 3313 2623 586 311 143 22 chr1 202118131 202118501 -40545852 - L2 LINE L2 -1197 2117 1703 384 257 88 0 chr1 202118540 202118653 -40545700 + MER63 DNA MER1_type 1 749 -87 256 389 111 19 chr1 202118751 202119718 -40544635 - L2 LINE L2 -1663 1651 596 21 0 0 0 chr1 202119798 202119819 -40544534 + AT_rich Low_complexity Low_complexity 1 21 0 244 246 18 0 chr1 202119854 202119911 -40544442 + GA-rich Low_complexity Low_complexity 3 60 0 222 37 0 0 chr1 202120627 202120654 -40543699 + (CA)n Simple_repeat Simple_repeat 2 28 0 201 317 67 42 chr1 202126741 202126861 -40537492 - MIR SINE MIR 0 262 140 587 261 146 18 chr1 202127561 202127787 -40536566 + MIR SINE MIR 1 255 -7 180 261 15 15 chr1 202127968 202128033 -40536320 + L2 LINE L2 2471 2535 -779 421 219 0 0 chr1 202128033 202128115 -40536238 - AluJo SINE Alu -225 87 6 757 242 0 7 chr1 202129145 202129298 -40535055 + MER58A DNA MER1_type 1 152 0 210 301 96 0 chr1 202129992 202130065 -40534288 + L2 LINE L2 3193 3272 0 583 328 29 0 chr1 202130145 202130349 -40534004 + MIR SINE MIR 52 261 -1 3116 209 43 34 chr1 202132089 202132917 -40531436 + Charlie1a DNA MER1_type 1 836 -619 2394 189 101 12 chr1 202133017 202133699 -40530654 + Charlie1 DNA MER1_type 2014 2756 -5 188 301 100 108 chr1 202133703 202134092 -40530261 - L2 LINE L2 -51 3221 2836 589 389 41 19 chr1 202134222 202134736 -40529617 - L2 LINE L2 -650 2664 2140 206 188 0 62 chr1 202134954 202135018 -40529335 + GA-rich Low_complexity Low_complexity 6 65 0 25 0 0 0 chr1 202137016 202137041 -40527312 + AT_rich Low_complexity Low_complexity 1 25 0 1363 234 17 73 chr1 202137275 202137797 -40526556 + L1MC5 LINE L1 6662 7154 -807 733 191 103 48 chr1 202137835 202138087 -40526266 + L1MC5 LINE L1 7648 7913 -48 361 288 68 45 chr1 202139267 202139444 -40524909 - MIR SINE MIR -29 233 53 185 0 40 0 chr1 202139546 202139571 -40524782 + (TAA)n Simple_repeat Simple_repeat 2 27 0 198 71 0 0 chr1 202141149 202141177 -40523176 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1770 50 0 0 chr1 202143617 202143837 -40520516 - L1PA8 LINE L1 -8 6164 5945 1370 93 16 0 chr1 202143837 202144030 -40520323 + L1P3 LINE L1 5353 5548 -624 1274 206 146 83 chr1 202144217 202144735 -40519618 - MER39 LTR ERV1 -24 683 1 605 276 137 59 chr1 202145383 202145822 -40518531 - MLT1H LTR MaLR -4 545 73 312 327 85 20 chr1 202146635 202146834 -40517519 - MIR SINE MIR 0 262 51 1903 146 6 58 chr1 202146937 202147266 -40517087 - AluJo SINE Alu 0 312 1 927 258 54 64 chr1 202147302 202147972 -40516381 - L2 LINE L2 -5 3308 2203 472 322 18 63 chr1 202148089 202148424 -40515929 - L2 LINE L2 -337 2977 2658 1178 84 0 12 chr1 202148649 202148815 -40515538 - L1PA7 LINE L1 0 6154 5991 303 125 47 62 chr1 202148901 202148965 -40515388 + L1P LINE L1 5310 5372 -783 22 0 0 0 chr1 202149885 202149907 -40514446 + AT_rich Low_complexity Low_complexity 1 22 0 5385 104 10 11 chr1 202150224 202151329 -40513024 - L1PA12 LINE L1 -92 6076 4979 1923 155 3 10 chr1 202151499 202151808 -40512545 - AluJo SINE Alu -5 307 1 271 299 135 36 chr1 202151814 202152006 -40512347 - L1M4 LINE L1 -1901 4245 4073 193 71 0 48 chr1 202152006 202152048 -40512305 + (TA)n Simple_repeat Simple_repeat 1 40 0 271 299 135 36 chr1 202152048 202152269 -40512084 - L1M4 LINE L1 -2073 4073 3791 405 244 134 17 chr1 202152273 202152392 -40511961 + MIR SINE MIR 130 262 0 5913 145 19 1 chr1 202152598 202153599 -40510754 + L1P LINE L1 4275 5293 -853 703 260 113 17 chr1 202154024 202154255 -40510098 + MIR SINE MIR 2 254 -8 182 284 179 11 chr1 202154684 202154779 -40509574 + MIR3 SINE MIR 13 123 -85 189 282 12 82 chr1 202155202 202155287 -40509066 - L2 LINE L2 -212 3060 2982 219 408 30 9 chr1 202155315 202155548 -40508805 - L2 LINE L2 -407 2907 2670 353 258 0 73 chr1 202155854 202155978 -40508375 - MIR SINE MIR -50 212 98 315 264 198 8 chr1 202156426 202156547 -40507806 + MIR3 SINE MIR 64 207 -1 654 269 79 13 chr1 202157041 202157412 -40506941 + MLT1J LTR MaLR 7 453 -58 24 0 0 0 chr1 202157452 202157476 -40506877 + AT_rich Low_complexity Low_complexity 1 24 0 557 128 0 0 chr1 202157480 202157566 -40506787 + AluY SINE Alu 1 86 -224 265 324 97 51 chr1 202158104 202158280 -40506073 - MIR SINE MIR -76 186 3 259 205 39 13 chr1 202158739 202158755 -40505598 + (CATATA)n Simple_repeat Simple_repeat 2 16 -65 636 179 18 0 chr1 202158755 202158867 -40505486 + MER81 DNA DNA 1 114 0 259 205 39 13 chr1 202158867 202158928 -40505425 + (CATATA)n Simple_repeat Simple_repeat 16 81 0 2382 88 0 0 chr1 202161715 202162009 -40502344 - AluSq SINE Alu -19 294 1 1551 114 89 11 chr1 202162143 202162414 -40501939 + L1PA16 LINE L1 5868 6159 -7 402 286 16 8 chr1 202163518 202163644 -40500709 - MIR SINE MIR -1 261 135 1178 123 6 0 chr1 202163962 202164132 -40500221 + AluSq SINE Alu 133 303 -10 1818 171 0 0 chr1 202164147 202164421 -40499932 + AluSx SINE Alu 3 276 -36 2178 115 3 13 chr1 202164799 202165111 -40499242 + AluSx SINE Alu 1 309 -3 2158 112 0 14 chr1 202165232 202165527 -40498826 + AluSx SINE Alu 5 295 -17 5539 143 26 3 chr1 202165819 202166823 -40497530 - L1P LINE L1 -778 5368 4342 3725 148 21 0 chr1 202166823 202167440 -40496913 - HERVL LTR ERVL -1739 3915 3286 1897 110 0 0 chr1 202167445 202167691 -40496662 + AluSc SINE Alu 1 246 -63 506 322 64 28 chr1 202168943 202169498 -40494855 - L1MEc LINE L1 -3518 2908 2324 2267 245 60 27 chr1 202169591 202170294 -40494059 + HsTC2c DNA MER2_type 4 729 0 2207 106 0 0 chr1 202170463 202170747 -40493606 + AluSg SINE Alu 1 284 -26 294 29 0 0 chr1 202170764 202170799 -40493554 + (TTA)n Simple_repeat Simple_repeat 3 37 0 558 303 57 20 chr1 202170808 202171267 -40493086 + L1MEc LINE L1 957 1432 -4964 320 274 17 17 chr1 202171274 202171391 -40492962 - L1MEc LINE L1 -4346 2080 1964 530 289 48 3 chr1 202171436 202171792 -40492561 + L1MEc LINE L1 2113 2484 -3912 236 184 0 0 chr1 202171831 202171869 -40492484 + AluY SINE Alu 5 42 -260 3908 189 6 1 chr1 202171970 202172860 -40491493 - L1PBa LINE L1 -3180 3682 2787 334 151 0 0 chr1 202172861 202172914 -40491439 - Alu SINE Alu -14 288 236 1849 230 90 14 chr1 202172914 202173545 -40490808 - L1PBa LINE L1 -5839 1024 346 333 298 0 0 chr1 202173551 202173672 -40490681 - L1PBa LINE L1 -6607 256 136 213 121 0 0 chr1 202174042 202174075 -40490278 + (T)n Simple_repeat Simple_repeat 1 33 0 2141 121 0 7 chr1 202174393 202174690 -40489663 - AluSg SINE Alu -15 295 1 814 302 83 4 chr1 202174786 202175028 -40489325 - MIR SINE MIR 0 262 2 185 359 33 43 chr1 202175063 202175155 -40489198 + MIR SINE MIR 50 140 -122 306 300 22 0 chr1 202175521 202175611 -40488742 - L1MC4 LINE L1 -1337 6705 6614 205 237 0 0 chr1 202175611 202175649 -40488704 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr1 202176010 202176033 -40488320 + AT_rich Low_complexity Low_complexity 1 23 0 2375 64 0 0 chr1 202176185 202176468 -40487885 + AluY SINE Alu 17 299 -12 3809 94 9 13 chr1 202177808 202178349 -40486004 + L1PA10 LINE L1 5614 6152 -16 334 277 213 0 chr1 202180989 202181130 -40483223 - MIR SINE MIR -6 256 86 21 0 0 0 chr1 202181369 202181390 -40482963 + AT_rich Low_complexity Low_complexity 1 21 0 2395 92 0 3 chr1 202181459 202181765 -40482588 - AluSc SINE Alu -4 305 1 25 0 0 0 chr1 202181862 202181887 -40482466 + AT_rich Low_complexity Low_complexity 1 25 0 440 270 17 9 chr1 202181948 202182063 -40482290 - L2 LINE L2 -4 3309 3194 1908 139 10 17 chr1 202182460 202182754 -40481599 + AluSx SINE Alu 1 292 -20 2082 120 3 7 chr1 202184096 202184387 -40479966 + AluSx SINE Alu 1 290 -22 2222 143 20 13 chr1 202185210 202185603 -40478750 + MER57A LTR ERV1 8 403 0 2220 114 0 32 chr1 202185659 202185975 -40478378 + AluSq SINE Alu 3 308 -5 378 291 99 7 chr1 202186437 202186578 -40477775 + MIR SINE MIR 96 249 -13 321 281 16 87 chr1 202186846 202187031 -40477322 - MLT1J2 LTR MaLR -229 221 50 196 362 17 43 chr1 202187918 202188000 -40476353 + L2 LINE L2 3160 3240 -32 2138 127 124 16 chr1 202188000 202188386 -40475967 - MSTA LTR MaLR 0 428 1 196 362 17 43 chr1 202188386 202188419 -40475934 + L2 LINE L2 3240 3272 0 362 349 47 0 chr1 202188707 202188836 -40475517 - L2 LINE L2 -1 3312 3178 328 297 133 8 chr1 202189130 202189258 -40475095 + MER20B DNA MER1_type 10 153 -630 2319 55 0 7 chr1 202192073 202192362 -40471991 + AluY SINE Alu 16 302 -9 233 310 44 35 chr1 202192978 202193091 -40471262 + L2 LINE L2 3155 3268 -4 285 51 0 0 chr1 202193869 202193908 -40470445 + (T)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr1 202194071 202194093 -40470260 + AT_rich Low_complexity Low_complexity 1 22 0 2496 62 0 28 chr1 202194614 202194934 -40469419 - AluY SINE Alu 0 311 1 2815 284 52 33 chr1 202195300 202196883 -40467470 - L1MEc LINE L1 -4748 1648 35 207 292 0 42 chr1 202197120 202197192 -40467161 + L2 LINE L2 3245 3313 0 279 341 106 26 chr1 202197297 202197608 -40466745 + L3 LINE CR1 617 952 -625 239 246 140 43 chr1 202198083 202198207 -40466146 - MIR SINE MIR -59 203 69 1718 146 45 7 chr1 202198522 202198809 -40465544 + AluJo SINE Alu 1 298 -14 216 273 65 13 chr1 202199742 202199819 -40464534 - MIR3 SINE MIR 0 208 128 2346 94 13 3 chr1 202200513 202200822 -40463531 - AluSq SINE Alu -1 312 1 963 100 0 0 chr1 202201100 202201240 -40463113 + L1PA13 LINE L1 6011 6150 -13 230 184 0 11 chr1 202201329 202201416 -40462937 + (TA)n Simple_repeat Simple_repeat 1 86 0 2157 124 0 0 chr1 202201417 202201708 -40462645 - AluSx SINE Alu -21 291 1 218 299 156 0 chr1 202202357 202202434 -40461919 - MIR SINE MIR -14 248 160 409 252 19 10 chr1 202202598 202202701 -40461652 - MER5A DNA MER1_type -85 104 1 457 271 8 0 chr1 202202783 202202916 -40461437 + MER103 DNA DNA 22 155 -11 2170 125 0 0 chr1 202203480 202203777 -40460576 - AluSx SINE Alu -15 297 1 1993 126 0 0 chr1 202204331 202204608 -40459745 + AluSx SINE Alu 20 296 -16 2016 131 0 3 chr1 202205531 202205814 -40458539 + AluSx SINE Alu 14 295 -17 222 236 56 22 chr1 202206026 202206115 -40458238 + L2 LINE L2 2596 2687 -627 350 325 44 40 chr1 202206159 202206327 -40458026 + L1MC4a LINE L1 5621 5792 -2016 925 214 112 24 chr1 202206327 202206533 -40457820 - MER58A DNA MER1_type 0 224 1 350 325 44 40 chr1 202206533 202206638 -40457715 + L1MC4a LINE L1 5792 5895 -1913 221 174 22 0 chr1 202206674 202206720 -40457633 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 2202 113 3 3 chr1 202206864 202207164 -40457189 - AluSx SINE Alu -12 300 1 286 317 62 7 chr1 202207580 202207725 -40456628 + L2 LINE L2 3142 3294 -19 693 282 109 64 chr1 202208044 202208594 -40455759 - MLT1L LTR MaLR -22 593 19 269 282 48 40 chr1 202208690 202208814 -40455539 + MIR SINE MIR 64 188 -74 274 288 12 0 chr1 202210790 202210870 -40453483 + MIR3 SINE MIR 117 197 -11 319 164 45 0 chr1 202211720 202211787 -40452566 + MIR SINE MIR 80 149 -113 2066 76 33 18 chr1 202211853 202212128 -40452225 - L1PA7 LINE L1 0 6154 5876 408 301 116 5 chr1 202212486 202212685 -40451668 - MIR SINE MIR -32 230 10 459 102 20 10 chr1 202212734 202212832 -40451521 + (TA)n Simple_repeat Simple_repeat 1 99 0 1260 207 4 21 chr1 202212834 202213071 -40451282 - MER8 DNA MER2_type 0 239 7 572 34 0 114 chr1 202213165 202213202 -40451151 + MADE1 DNA Mariner 3 26 -54 2165 106 3 3 chr1 202213202 202213503 -40450850 - AluSp SINE Alu -12 301 1 572 34 0 114 chr1 202213503 202213553 -40450800 + MADE1 DNA Mariner 26 80 0 230 363 20 0 chr1 202213606 202213708 -40450645 - L2 LINE L2 0 3313 3210 1119 232 51 29 chr1 202213770 202214085 -40450268 - MER58B DNA MER1_type -1 340 19 824 159 0 0 chr1 202215812 202215944 -40448409 + FLAM_A SINE Alu 8 139 -3 351 250 94 0 chr1 202216091 202216187 -40448166 - MIR SINE MIR -111 151 47 3528 146 15 10 chr1 202216268 202216384 -40447969 - MER1A DNA MER1_type -2173 527 413 2235 79 0 7 chr1 202216384 202216663 -40447690 - AluY SINE Alu -2 309 33 3528 146 15 10 chr1 202216663 202217068 -40447285 - MER1A DNA MER1_type -2287 413 3 24 0 0 0 chr1 202217098 202217122 -40447231 + AT_rich Low_complexity Low_complexity 1 24 0 745 208 0 79 chr1 202217514 202217644 -40446709 - MER5A DNA MER1_type 0 189 75 996 199 0 0 chr1 202217644 202217800 -40446553 - FRAM SINE Alu -10 156 1 745 208 0 79 chr1 202217800 202217847 -40446506 - MER5A DNA MER1_type -114 75 26 1854 259 42 16 chr1 202218460 202218959 -40445394 - LTR31 LTR ERV1 0 619 108 1598 171 14 17 chr1 202219009 202219302 -40445051 - AluJo SINE Alu -20 292 1 2701 32 0 0 chr1 202219507 202219815 -40444538 + AluY SINE Alu 1 308 -3 2312 80 3 7 chr1 202220410 202220712 -40443641 - AluSq SINE Alu -12 301 1 256 300 25 12 chr1 202220719 202220799 -40443554 - MIR SINE MIR -63 145 65 473 201 11 123 chr1 202220904 202221083 -40443270 - MIR SINE MIR -16 246 88 553 240 120 29 chr1 202222009 202222217 -40442136 - MIR SINE MIR -24 238 12 1633 231 122 22 chr1 202222591 202223050 -40441303 + MLT1D LTR MaLR 1 505 0 864 179 10 51 chr1 202223747 202223942 -40440411 - MER5A DNA MER1_type -2 187 1 293 280 90 60 chr1 202224867 202225067 -40439286 - L3b LINE CR1 -92 1491 1286 1944 106 0 90 chr1 202225707 202226028 -40438325 - AluSx SINE Alu -20 292 1 487 223 122 40 chr1 202226302 202226450 -40437903 + MER69A DNA AcHobo 18 177 0 1593 136 21 46 chr1 202226622 202226902 -40437451 + AluJb SINE Alu 38 310 -2 1319 130 5 37 chr1 202226905 202227120 -40437233 + AluJo SINE Alu 92 299 -13 842 244 82 29 chr1 202227488 202227767 -40436586 - LTR19C LTR ERV1 0 779 486 * 1432 202 26 84 chr1 202227745 202228160 -40436193 - LTR9 LTR ERV1 -221 391 1 1828 84 42 138 chr1 202228538 202228872 -40435481 + AluSp SINE Alu 1 302 -11 366 307 52 31 chr1 202228917 202229109 -40435244 + MIR SINE MIR 59 254 -8 4030 142 87 1 chr1 202229898 202230553 -40433800 - MER72 LTR ERV1 0 722 12 21 0 0 0 chr1 202230793 202230814 -40433539 + AT_rich Low_complexity Low_complexity 1 21 0 717 288 33 9 chr1 202231498 202231713 -40432640 + MIR SINE MIR 32 251 -11 199 257 59 59 chr1 202231757 202231858 -40432495 - L2 LINE L2 -3 3269 3169 640 298 23 19 chr1 202231911 202232126 -40432227 + MIR SINE MIR 7 222 -40 2141 138 0 0 chr1 202232925 202233236 -40431117 - AluSx SINE Alu -1 311 1 326 271 42 25 chr1 202233324 202233442 -40430911 - MIR SINE MIR -108 154 35 3208 127 27 35 chr1 202233967 202234488 -40429865 + L1PA15 LINE L1 5648 6164 -1 1163 174 42 9 chr1 202235157 202235369 -40428984 - MER20 DNA MER1_type 0 219 1 288 231 209 22 chr1 202235463 202235597 -40428756 - MIR SINE MIR -12 250 92 228 67 0 0 chr1 202236659 202236689 -40427664 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr1 202237895 202237931 -40426422 + AT_rich Low_complexity Low_complexity 1 36 0 357 145 0 0 chr1 202238479 202238541 -40425812 + (TC)n Simple_repeat Simple_repeat 1 62 0 218 254 57 107 chr1 202239195 202239317 -40425036 + MIR SINE MIR 18 133 -75 324 276 61 20 chr1 202240675 202240773 -40423580 + L2 LINE L2 3155 3256 -16 207 0 0 0 chr1 202242488 202242511 -40421842 + (GA)n Simple_repeat Simple_repeat 1 23 0 343 245 22 24 chr1 202244400 202244550 -40419803 - MLT1E2 LTR MaLR -18 606 364 21 0 0 0 chr1 202244954 202244975 -40419378 + AT_rich Low_complexity Low_complexity 1 21 0 598 311 30 14 chr1 202245100 202245447 -40418906 - L1MC4a LINE L1 -359 5811 5545 222 373 34 8 chr1 202245779 202245897 -40418456 - MIR SINE MIR -111 151 31 301 247 105 97 chr1 202246990 202247237 -40417116 - MLT1K LTR MaLR -6 582 334 211 257 27 14 chr1 202248580 202248654 -40415699 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 275 326 82 69 chr1 202248953 202249123 -40415230 + MIR SINE MIR 2 177 -85 2142 98 25 0 chr1 202249123 202249399 -40414954 + AluSc SINE Alu 3 285 -24 275 326 82 69 chr1 202249399 202249473 -40414880 + MIR SINE MIR 177 249 -13 231 293 27 0 chr1 202249569 202249644 -40414709 - MIR SINE MIR 0 262 186 422 278 73 0 chr1 202249723 202249854 -40414499 - MIR SINE MIR -63 145 10 1875 138 20 13 chr1 202253000 202253304 -40411049 - AluSx SINE Alu -6 306 1 478 282 27 58 chr1 202253596 202253784 -40410569 - L3 LINE CR1 -2 1575 1394 459 244 260 20 chr1 202253821 202254075 -40410278 + Charlie2b DNA MER1_type 1 315 -2547 * 540 229 0 0 chr1 202254069 202254178 -40410175 + Charlie2b DNA MER1_type 556 664 -2118 943 103 23 6 chr1 202254185 202254359 -40409994 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 294 164 0 0 chr1 202254373 202254428 -40409925 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 801 206 11 6 chr1 202254467 202254647 -40409706 + Charlie2a DNA MER1_type 1476 1656 -1206 430 183 43 9 chr1 202254672 202254787 -40409566 + Charlie2a DNA MER1_type 2728 2846 -16 956 63 39 0 chr1 202255521 202255648 -40408705 + MLT2A2 LTR ERVL 3 134 -319 1466 107 19 5 chr1 202255651 202255866 -40408487 + MLT2A1 LTR ERVL 186 403 -41 290 127 0 16 chr1 202255871 202255934 -40408419 + (TA)n Simple_repeat Simple_repeat 2 63 0 207 0 0 0 chr1 202255981 202256004 -40408349 + (TA)n Simple_repeat Simple_repeat 2 24 0 429 55 0 0 chr1 202256004 202256059 -40408294 + MLT2A1 LTR ERVL 399 453 0 383 191 0 15 chr1 202256356 202256424 -40407929 + MER6A DNA MER2_type 2 68 -537 1628 158 0 0 chr1 202256527 202256787 -40407566 + MER6A DNA MER2_type 346 605 0 2211 174 58 95 chr1 202256793 202257340 -40407013 - LTR26 LTR ERV1 0 603 77 231 150 50 0 chr1 202257717 202257757 -40406596 - MER49 LTR ERV1 -686 237 196 4573 149 54 44 chr1 202257757 202259101 -40405252 - pTR5 LTR ERV1 -133 1681 35 988 174 21 16 chr1 202259101 202259291 -40405062 - MER49 LTR ERV1 -724 199 9 976 164 4 6 chr1 202259292 202259520 -40404833 - LTR26-int LTR ERV1 -1023 7097 6829 262 180 66 0 chr1 202259528 202259589 -40404764 - LTR26-int LTR ERV1 -320 6438 6374 1107 152 23 62 chr1 202259605 202259990 -40404363 - LTR26-int LTR ERV1 -595 6163 3786 6128 172 73 74 chr1 202260170 202261077 -40403276 - LTR26-int LTR ERV1 -2148 4183 3277 1683 180 0 7 chr1 202261077 202261360 -40402993 - AluJb SINE Alu -29 283 3 6128 172 73 74 chr1 202261360 202262730 -40401623 - LTR26-int LTR ERV1 -3054 3277 723 * 6132 179 52 24 chr1 202261859 202263141 -40401212 - LTR57-int LTR ERVL -3751 1592 275 838 231 25 37 chr1 202263325 202263613 -40400740 - LTR26-int LTR ERV1 -5044 1023 662 512 277 14 40 chr1 202263582 202263730 -40400623 - LTR26-int LTR ERV1 -5549 714 571 * 345 314 20 33 chr1 202263976 202264129 -40400224 - LTR26-int LTR ERV1 -6088 175 25 1771 165 9 37 chr1 202264153 202264316 -40400037 - LTR26 LTR ERV1 0 603 452 2288 91 7 0 chr1 202264316 202264614 -40399739 - AluSg SINE Alu -10 300 1 1771 165 9 37 chr1 202264614 202264772 -40399581 - LTR26 LTR ERV1 -151 452 291 1562 160 40 62 chr1 202264798 202265123 -40399230 - LTR26 LTR ERV1 -283 320 3 185 0 40 0 chr1 202265217 202265242 -40399111 + (TTG)n Simple_repeat Simple_repeat 2 27 0 634 279 68 63 chr1 202265840 202266238 -40398115 + L2 LINE L2 2906 3305 -8 2048 143 0 0 chr1 202267303 202267712 -40396641 + AluSx SINE Alu 1 409 0 192 158 0 0 chr1 202267712 202267750 -40396603 + GA-rich Low_complexity Low_complexity 1 38 0 * 269 67 0 44 chr1 202267742 202267787 -40396566 + (GAAAA)n Simple_repeat Simple_repeat 4 46 0 340 269 106 0 chr1 202268263 202268367 -40395986 - MLT1D LTR MaLR -72 433 319 578 206 78 159 chr1 202268460 202268521 -40395832 + HsTC2 DNA Tc2 1287 1351 -547 2037 59 0 59 chr1 202268521 202268810 -40395543 - AluY SINE Alu 0 311 40 578 206 78 159 chr1 202268810 202269225 -40395128 + HsTC2 DNA Tc2 1351 1900 2 1829 162 0 0 chr1 202269385 202269663 -40394690 - AluSx SINE Alu -14 298 21 2521 72 0 0 chr1 202270299 202270605 -40393748 - AluY SINE Alu -5 306 1 189 306 0 0 chr1 202270673 202270722 -40393631 - L2 LINE L2 -1 3312 3264 261 250 94 9 chr1 202271000 202271136 -40393217 + L1M1 LINE L1 1702 1830 -4554 330 284 34 75 chr1 202271152 202271391 -40392962 + L1MEc LINE L1 1858 2086 -4310 579 231 29 6 chr1 202271458 202271631 -40392722 + L1MEc LINE L1 2386 2562 -3653 2624 226 70 68 chr1 202271856 202272631 -40391722 + L1MEc LINE L1 2122 2859 -3356 2226 87 3 27 chr1 202272631 202272930 -40391423 + AluSg SINE Alu 1 292 -18 2624 226 70 68 chr1 202272930 202273376 -40390977 + L1MEc LINE L1 2859 3303 -2912 302 175 39 122 chr1 202273784 202273934 -40390419 + LTR50 LTR ERVL 638 795 0 29 28 0 0 chr1 202274030 202274066 -40390287 + AT_rich Low_complexity Low_complexity 1 36 0 398 140 9 93 chr1 202274397 202274504 -40389849 + L1ME1 LINE L1 5771 5868 -298 354 179 39 13 chr1 202274505 202274583 -40389770 + L1ME2 LINE L1 5340 5419 -743 2661 124 56 36 chr1 202274584 202274844 -40389509 + LTR47A LTR ERVL 1 275 -177 2766 118 3 0 chr1 202274844 202275207 -40389146 + THE1B LTR MaLR 1 364 0 2661 124 56 36 chr1 202275207 202275389 -40388964 + LTR47A LTR ERVL 275 452 0 1317 262 66 21 chr1 202275396 202275865 -40388488 + L1ME2 LINE L1 5428 5917 -247 860 226 49 35 chr1 202275860 202276086 -40388267 - L1M4 LINE L1 -1246 4900 4672 * 1700 179 14 7 chr1 202276161 202276458 -40387895 - AluJo SINE Alu -13 299 1 707 222 15 0 chr1 202276467 202276602 -40387751 - FLAM_A SINE Alu -5 137 1 25 0 0 0 chr1 202276615 202276640 -40387713 + AT_rich Low_complexity Low_complexity 1 25 0 2649 117 0 29 chr1 202276711 202277097 -40387256 - THE1C LTR MaLR 0 375 1 9163 130 29 45 chr1 202277097 202278833 -40385520 - THE1C-int LTR MaLR 0 1651 1 2546 157 14 48 chr1 202280224 202280707 -40383646 + MLT1C LTR MaLR 1 467 0 636 301 73 89 chr1 202280943 202281425 -40382928 - MLT1J LTR MaLR -8 503 30 279 267 56 44 chr1 202281613 202281703 -40382650 - MLT1J2 LTR MaLR -62 388 298 422 250 90 27 chr1 202281714 202281919 -40382434 - MLT1J LTR MaLR -217 229 1 2724 95 3 0 chr1 202282051 202282409 -40381944 + L1PA13 LINE L1 5804 6162 -1 2012 91 67 20 chr1 202282453 202282751 -40381602 - AluSx SINE Alu 0 312 1 661 133 26 0 chr1 202282757 202282870 -40381483 + L1MA5 LINE L1 6180 6295 -5 958 301 45 38 chr1 202283257 202283314 -40381039 - ERVL LTR ERVL -3279 2485 2430 2208 110 0 0 chr1 202283314 202283606 -40380747 - AluSg SINE Alu -18 292 1 958 301 45 38 chr1 202283606 202283993 -40380360 - ERVL LTR ERVL -3334 2430 2038 371 253 62 19 chr1 202285223 202285385 -40378968 + L1MA10 LINE L1 6166 6334 0 23 86 0 0 chr1 202285883 202285941 -40378412 + AT_rich Low_complexity Low_complexity 1 58 0 1403 235 15 14 chr1 202286014 202286561 -40377792 + L1M4 LINE L1 4937 5481 -703 229 274 33 39 chr1 202286588 202286741 -40377612 + (CTGGGG)n Simple_repeat Simple_repeat 5 156 0 24 0 0 0 chr1 202289147 202289171 -40375182 + GC_rich Low_complexity Low_complexity 1 24 0 197 219 0 16 chr1 202289892 202289956 -40374397 + (TA)n Simple_repeat Simple_repeat 1 63 0 232 125 0 71 chr1 202290074 202290130 -40374223 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 21 71 0 0 chr1 202290209 202290251 -40374102 + AT_rich Low_complexity Low_complexity 1 42 0 437 343 60 19 chr1 202290522 202290953 -40373400 + L1MC4a LINE L1 5433 5881 -1927 1522 211 7 0 chr1 202293104 202293573 -40370780 + AluJb SINE Alu 1 471 0 913 265 18 48 chr1 202293616 202294073 -40370280 - L1MEc LINE L1 -5118 1278 836 315 202 26 18 chr1 202294073 202294187 -40370166 + CT-rich Low_complexity Low_complexity 1 115 0 2400 254 49 31 chr1 202294187 202294966 -40369387 - L1MEc LINE L1 -5556 840 48 450 347 98 11 chr1 202295096 202295381 -40368972 - ERVL LTR ERVL -694 5070 4761 189 341 0 0 chr1 202295947 202295991 -40368362 + MIR SINE MIR 33 76 -186 326 275 208 7 chr1 202295997 202296146 -40368207 + MIR SINE MIR 33 211 -51 186 143 24 71 chr1 202296255 202296297 -40368056 + L2 LINE L2 3208 3247 -25 232 274 0 16 chr1 202296350 202296412 -40367941 + L2 LINE L2 3238 3298 -15 285 29 0 0 chr1 202297882 202297916 -40366437 + (GA)n Simple_repeat Simple_repeat 2 35 0 22 56 0 0 chr1 202298739 202298775 -40365578 + AT_rich Low_complexity Low_complexity 1 36 0 271 245 31 51 chr1 202298835 202298933 -40365420 - MIR SINE MIR -114 148 53 294 210 16 0 chr1 202299963 202300025 -40364328 + L2 LINE L2 3241 3303 -10 346 254 55 36 chr1 202300500 202300610 -40363743 + L2 LINE L2 3202 3313 0 228 67 0 0 chr1 202300661 202300691 -40363662 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 2141 120 0 0 chr1 202301161 202301444 -40362909 + AluSx SINE Alu 1 283 -29 1472 211 101 0 chr1 202301854 202302209 -40362144 + L1MB4 LINE L1 5784 6174 -6 941 180 44 40 chr1 202302781 202303009 -40361344 + L1MB7 LINE L1 5626 5854 -330 2169 158 72 60 chr1 202303010 202303389 -40360964 + L1MA9 LINE L1 5783 6171 -141 282 56 0 0 chr1 202303389 202303425 -40360928 + (CA)n Simple_repeat Simple_repeat 2 37 0 2169 158 72 60 chr1 202303425 202303544 -40360809 + L1MA9 LINE L1 6171 6287 -25 301 340 37 73 chr1 202304369 202304533 -40359820 + MIR3 SINE MIR 18 175 -33 1835 135 8 0 chr1 202305633 202305900 -40358453 + AluSx SINE Alu 41 309 -3 1028 99 6 22 chr1 202305904 202305951 -40358402 + (GAAA)n Simple_repeat Simple_repeat 1 224 0 1028 99 6 22 chr1 202305951 202306132 -40358221 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1432 153 9 0 chr1 202308743 202308971 -40355382 + AluJb SINE Alu 1 230 -82 1108 110 0 11 chr1 202308971 202309043 -40355310 + (GAAA)n Simple_repeat Simple_repeat 1 251 0 1108 110 0 11 chr1 202309043 202309225 -40355128 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 873 143 0 28 chr1 202309514 202309696 -40354657 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 201 250 0 0 chr1 202310176 202310224 -40354129 + T-rich Low_complexity Low_complexity 1 48 0 260 298 70 18 chr1 202311429 202311543 -40352810 + L2 LINE L2 3133 3252 -20 1010 268 96 21 chr1 202311581 202311823 -40352530 + MLT1J2 LTR MaLR 1 282 -168 2523 182 15 4 chr1 202311823 202312279 -40352074 - MER65C LTR ERV1 0 461 1 1010 268 96 21 chr1 202312279 202312413 -40351940 + MLT1J2 LTR MaLR 282 405 -45 22 35 0 0 chr1 202312692 202312721 -40351632 + AT_rich Low_complexity Low_complexity 1 29 0 2430 108 51 20 chr1 202312726 202313078 -40351275 + THE1B LTR MaLR 1 363 -1 12724 89 4 2 chr1 202313081 202314655 -40349698 + THE1B-int LTR MaLR 4 1580 0 2467 113 48 20 chr1 202314656 202315009 -40349344 + THE1B LTR MaLR 2 364 0 381 352 44 29 chr1 202316833 202317290 -40347063 - HERV15 LTR ERV1 -2017 5739 5390 512 378 22 33 chr1 202317387 202317877 -40346476 - HERV15 LTR ERV1 -3432 3690 3206 304 265 48 87 chr1 202318149 202318452 -40345901 - HERV15 LTR ERV1 -3268 3823 3587 649 157 0 131 chr1 202318505 202318837 -40345516 + FLAM_C SINE Alu 1 312 0 2278 104 13 0 chr1 202319367 202319666 -40344687 - AluSx SINE Alu -9 303 1 270 262 40 32 chr1 202320109 202320235 -40344118 - HERV15 LTR ERV1 -6542 2193 2067 1516 224 28 22 chr1 202320385 202320938 -40343415 - L1M3 LINE L1 -679 5501 4946 27 0 0 0 chr1 202321338 202321365 -40342988 + AT_rich Low_complexity Low_complexity 1 27 0 513 211 20 59 chr1 202321727 202321879 -40342474 - L1MA10 LINE L1 -9 6325 6180 671 338 54 47 chr1 202322776 202323481 -40340872 + ERVL LTR ERVL 1790 2499 -3265 702 191 194 78 chr1 202323583 202323877 -40340476 + L1MCc LINE L1 1038 1365 -5058 332 299 106 25 chr1 202324175 202324533 -40339820 + MLT1J2 LTR MaLR 1 450 0 24 0 0 0 chr1 202324570 202324594 -40339759 + AT_rich Low_complexity Low_complexity 1 24 0 421 286 25 92 chr1 202324617 202324855 -40339498 + MLT1J LTR MaLR 1 222 -289 1053 105 7 13 chr1 202324858 202325010 -40339343 + AluSc SINE Alu 1 151 -158 1526 94 0 10 chr1 202325012 202325215 -40339138 + AluSg/x SINE Alu 104 304 -8 581 317 107 27 chr1 202325234 202325496 -40338857 + MLT1J LTR MaLR 223 505 -6 2615 163 8 40 chr1 202325774 202326252 -40338101 - MLT1C LTR MaLR -4 463 1 195 320 52 52 chr1 202326627 202326821 -40337532 - L2 LINE L2 -157 3115 2922 2215 94 13 3 chr1 202327232 202327531 -40336822 + AluSq SINE Alu 1 302 -11 788 221 65 62 chr1 202327983 202328304 -40336049 + L1M4 LINE L1 4572 4893 -1253 1690 265 84 9 chr1 202328305 202328864 -40335489 - L1ME2 LINE L1 -246 5987 5387 323 289 10 0 chr1 202328877 202328981 -40335372 - L1ME2 LINE L1 -1082 5133 5029 1847 134 23 36 chr1 202329043 202329350 -40335003 - AluJb SINE Alu -9 303 1 412 262 131 2 chr1 202329353 202329442 -40334911 - L1ME2 LINE L1 -79 6087 6011 1272 218 130 36 chr1 202329442 202329804 -40334549 - MLT2C1 LTR ERVL 0 397 2 412 262 131 2 chr1 202329804 202329901 -40334452 - L1ME2 LINE L1 -155 6011 5875 27 29 0 0 chr1 202330226 202330260 -40334093 + AT_rich Low_complexity Low_complexity 1 34 0 278 201 21 118 chr1 202330365 202330509 -40333844 - LTR41 LTR ERVL -6 767 638 240 246 0 58 chr1 202330517 202330586 -40333767 + LTR67 LTR ERVL 155 219 -338 1151 254 74 7 chr1 202330919 202331376 -40332977 - L1ME2 LINE L1 -2919 3296 2809 22 0 0 0 chr1 202332612 202332634 -40331719 + AT_rich Low_complexity Low_complexity 1 22 0 225 241 56 0 chr1 202332964 202333018 -40331335 - L1ME2 LINE L1 -4668 1728 1672 219 309 0 0 chr1 202333332 202333387 -40330966 + L2 LINE L2 3257 3311 -2 2233 101 16 0 chr1 202333954 202334262 -40330091 - AluSp SINE Alu 0 313 1 2290 117 0 0 chr1 202334484 202334792 -40329561 + AluSx SINE Alu 1 308 -4 1067 231 100 104 chr1 202334876 202335613 -40328740 - HsTC2a DNA Tc2 0 744 11 321 109 0 0 chr1 202335709 202335764 -40328589 + (GA)n Simple_repeat Simple_repeat 2 56 0 215 241 25 51 chr1 202335974 202336053 -40328300 - L2 LINE L2 -8 3264 3188 282 318 0 0 chr1 202336101 202336186 -40328167 + MIR3 SINE MIR 92 176 -32 1580 58 0 5 chr1 202336287 202336477 -40327876 - AluY SINE Alu -23 288 100 1720 163 3 45 chr1 202337955 202338268 -40326085 + AluJo SINE Alu 1 300 -12 36 0 0 0 chr1 202338458 202338494 -40325859 + AT_rich Low_complexity Low_complexity 1 36 0 1145 142 0 0 chr1 202338837 202339006 -40325347 - AluSg/x SINE Alu -14 296 128 2426 61 14 0 chr1 202339239 202339536 -40324817 + AluSp SINE Alu 1 301 -12 257 288 144 9 chr1 202339708 202339819 -40324534 + L2 LINE L2 3133 3258 -14 1645 211 0 10 chr1 202339831 202340130 -40324223 + AluJb SINE Alu 1 296 -16 951 229 92 13 chr1 202340165 202340470 -40323883 + MLT1J2 LTR MaLR 2 330 -120 2399 98 3 0 chr1 202340785 202341091 -40323262 + AluSq SINE Alu 1 307 -6 22 56 0 0 chr1 202341195 202341231 -40323122 + AT_rich Low_complexity Low_complexity 1 36 0 681 275 74 61 chr1 202341940 202342413 -40321940 + MLT1J LTR MaLR 32 510 -1 241 354 31 15 chr1 202342529 202342659 -40321694 + MLT1K LTR MaLR 15 146 -442 213 121 0 0 chr1 202342902 202342935 -40321418 + (CA)n Simple_repeat Simple_repeat 1 33 0 345 319 9 43 chr1 202343834 202344023 -40320330 + MIR SINE MIR 17 199 -62 1010 190 93 139 chr1 202344300 202344893 -40319460 + MLT1F1 LTR MaLR 1 567 0 309 288 95 91 chr1 202344911 202345352 -40319001 + L2 LINE L2 2830 3272 0 2190 97 4 0 chr1 202346097 202346376 -40317977 - AluSx SINE Alu -32 280 1 1875 130 90 0 chr1 202347556 202347833 -40316520 - AluSq SINE Alu -11 302 1 410 271 0 0 chr1 202347861 202347957 -40316396 - MIR3 SINE MIR -27 181 86 415 235 314 7 chr1 202349034 202349187 -40315166 - MER105 DNA DNA -4 200 1 222 62 0 0 chr1 202349193 202349225 -40315128 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 653 161 77 54 chr1 202349484 202349614 -40314739 + AluJo SINE Alu 2 134 -178 2604 199 30 12 chr1 202349859 202350417 -40313936 - L1MB8 LINE L1 -2 6176 5609 261 206 0 48 chr1 202350638 202350701 -40313652 - L1MB8 LINE L1 -552 5622 5563 7093 211 38 4 chr1 202351049 202352692 -40311661 - L1MB8 LINE L1 -1010 5136 3439 2028 169 27 6 chr1 202352692 202353058 -40311295 + L1MB3 LINE L1 5801 6174 -9 2318 98 0 0 chr1 202353220 202353517 -40310836 - AluY SINE Alu -14 297 1 2641 133 25 5 chr1 202353725 202354122 -40310231 + L1PA15 LINE L1 5757 6161 -4 1953 195 18 8 chr1 202354122 202354506 -40309847 - L1MB4 LINE L1 -6 6174 5786 25 0 0 0 chr1 202354800 202354825 -40309528 + AT_rich Low_complexity Low_complexity 1 25 0 2127 115 3 31 chr1 202355377 202355698 -40308655 + AluSx SINE Alu 1 312 0 399 296 80 19 chr1 202356160 202356276 -40308077 + MIR SINE MIR 37 167 -95 6274 112 14 10 chr1 202356276 202357335 -40307018 + L1PA12 LINE L1 5105 6167 -1 399 296 80 19 chr1 202357335 202357380 -40306973 + MIR SINE MIR 167 208 -54 184 303 91 0 chr1 202357489 202357555 -40306798 + L2 LINE L2 3197 3268 -4 198 71 0 0 chr1 202357649 202357677 -40306676 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 2138 79 10 46 chr1 202358685 202358990 -40305363 + AluY SINE Alu 1 294 -17 644 66 0 11 chr1 202358990 202359081 -40305272 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 199 271 171 0 chr1 202360199 202360269 -40304084 + L2 LINE L2 3232 3313 0 303 243 44 66 chr1 202360624 202360760 -40303593 - L1ME4a LINE L1 -13 6108 5976 772 194 0 8 chr1 202363508 202363637 -40300716 - AluJb SINE Alu -18 294 167 907 359 77 25 chr1 202364598 202364694 -40299659 + ERVL LTR ERVL 2741 2831 -2823 1911 149 0 3 chr1 202364694 202365002 -40299351 + AluSx SINE Alu 1 307 -5 321 26 0 0 chr1 202365002 202365040 -40299313 + (TA)n Simple_repeat Simple_repeat 2 39 0 907 359 77 25 chr1 202365040 202365424 -40298929 + ERVL LTR ERVL 2831 3194 -2460 212 0 36 0 chr1 202365424 202365452 -40298901 + (TAA)n Simple_repeat Simple_repeat 2 30 0 907 359 77 25 chr1 202365452 202365818 -40298535 + ERVL LTR ERVL 3194 3594 -2060 1153 251 16 56 chr1 202366004 202366379 -40297974 - MLT1A1 LTR MaLR 0 365 6 259 282 94 40 chr1 202366577 202366726 -40297627 + ERVL LTR ERVL 4318 4474 -1290 486 318 91 40 chr1 202366803 202367356 -40296997 + ERVL LTR ERVL 4533 5129 -635 1357 275 68 10 chr1 202367409 202367823 -40296530 + L1MEc LINE L1 37 474 -5922 607 266 50 53 chr1 202367848 202367917 -40296436 + L1MEc LINE L1 1319 1387 -5009 2930 188 24 27 chr1 202367917 202368515 -40295838 + L1MB3 LINE L1 5547 6144 -39 2080 143 16 0 chr1 202368515 202368822 -40295531 + AluSq SINE Alu 1 312 -1 2930 188 24 27 chr1 202368822 202368846 -40295507 + L1MB3 LINE L1 6144 6167 -16 607 266 50 53 chr1 202368846 202369156 -40295197 + L1MEc LINE L1 1387 1697 -4699 1511 275 30 55 chr1 202369157 202369681 -40294672 + LTR40a LTR ERVL 3 513 -6 936 249 28 21 chr1 202369689 202369974 -40294379 + L1MEc LINE L1 1699 1985 -4411 1447 116 48 5 chr1 202369974 202370181 -40294172 + AluSx SINE Alu 1 216 -96 798 162 0 0 chr1 202370181 202370323 -40294030 + L1MEc LINE L1 1982 2123 -4273 283 273 61 0 chr1 202370323 202370389 -40293964 - Tigger5 DNA MER2_type -2123 200 131 676 282 65 18 chr1 202370443 202370720 -40293633 + L1MEc LINE L1 3197 3486 -2729 941 153 19 50 chr1 202370726 202371006 -40293347 - MER93b LTR ERV1 -5 368 1 915 266 15 8 chr1 202371006 202371355 -40292998 + L1MEc LINE L1 3483 3881 -2334 2069 183 60 31 chr1 202371357 202371804 -40292549 - LTR2B LTR ERV1 0 490 31 263 135 0 0 chr1 202371822 202371859 -40292494 + L1MEc LINE L1 3880 3916 -2299 833 233 6 6 chr1 202371863 202372039 -40292314 - LTR40c LTR ERVL -281 184 9 229 313 10 31 chr1 202372711 202372807 -40291546 + MLT1L LTR MaLR 374 467 -148 1181 175 8 60 chr1 202373788 202373972 -40290381 + MER96B DNA MER1_type? 1 171 -246 2317 78 0 0 chr1 202373972 202374275 -40290078 - AluSx SINE Alu 0 303 1 1181 175 8 60 chr1 202374275 202374340 -40290013 + MER96B DNA MER1_type? 171 238 -179 2676 39 0 0 chr1 202374346 202374656 -40289697 - AluY SINE Alu -1 310 1 1193 262 42 64 chr1 202374769 202375299 -40289054 - MER34 LTR ERV1 -23 519 2 480 256 51 152 chr1 202375663 202375979 -40288374 + MLT1L LTR MaLR 111 484 -117 1174 238 159 10 chr1 202376220 202376615 -40287738 + LTR16A1 LTR ERVL 3 456 -1 2320 162 81 10 chr1 202376807 202377203 -40287150 - MSTB LTR MaLR -2 424 1 874 322 92 37 chr1 202377350 202377869 -40286484 + MLT1K LTR MaLR 35 582 -6 255 305 39 74 chr1 202377930 202378044 -40286309 - L1ME LINE L1 -307 5814 5698 2138 116 0 29 chr1 202378044 202378354 -40285999 - AluSx SINE Alu -3 309 9 255 305 39 74 chr1 202378354 202378495 -40285858 - L1ME LINE L1 -423 5698 5568 194 0 0 37 chr1 202378811 202378838 -40285515 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 246 139 0 23 chr1 202379159 202379202 -40285151 - Alu SINE Alu -115 185 144 215 30 0 30 chr1 202379204 202379237 -40285116 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 1977 23 0 0 chr1 202379237 202379452 -40284901 - L1PA4 LINE L1 -13 6142 5928 201 74 0 0 chr1 202379793 202379820 -40284533 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 507 213 67 53 chr1 202379933 202380083 -40284270 - L1ME3A LINE L1 0 6162 6011 906 203 34 0 chr1 202380193 202380370 -40283983 + MER58A DNA MER1_type 42 224 0 1143 107 0 0 chr1 202380879 202381038 -40283315 - AluSq SINE Alu -3 310 152 2269 167 11 11 chr1 202381167 202381532 -40282821 + MLT1A1 LTR MaLR 1 365 0 948 152 24 12 chr1 202382474 202382638 -40281715 + Tigger1 DNA MER2_type 1 166 -2252 337 200 0 82 chr1 202382641 202382726 -40281627 + Tigger1 DNA MER2_type 2338 2415 -3 1616 156 7 51 chr1 202383181 202383476 -40280877 + AluJo SINE Alu 1 282 -30 287 288 167 8 chr1 202383577 202383709 -40280644 + MIR SINE MIR 6 158 -104 1690 149 59 21 chr1 202383927 202384215 -40280138 + AluJo SINE Alu 1 299 -13 1993 137 0 16 chr1 202384962 202385268 -40279085 + AluSx SINE Alu 1 301 -11 1540 148 10 56 chr1 202385505 202385635 -40278718 - L1MB7 LINE L1 0 6184 6050 2181 91 38 3 chr1 202385635 202385922 -40278431 - AluSq SINE Alu -16 297 1 1540 148 10 56 chr1 202385922 202386094 -40278259 - L1MB7 LINE L1 -134 6050 5896 1949 121 0 3 chr1 202386099 202386381 -40277972 - AluSx SINE Alu 0 312 32 1830 120 0 67 chr1 202386920 202387220 -40277133 + AluSx SINE Alu 1 280 -32 364 303 86 30 chr1 202387432 202387666 -40276687 + MLT1L LTR MaLR 165 411 -204 1159 79 0 0 chr1 202387804 202387944 -40276409 - AluSp/q SINE Alu -15 298 159 4143 140 19 11 chr1 202388279 202388908 -40275445 + MER41B LTR ERV1 2 635 0 772 279 82 29 chr1 202390144 202390424 -40273929 - MER102b DNA MER1_type -14 327 33 378 91 0 0 chr1 202390508 202390563 -40273790 + (GA)n Simple_repeat Simple_repeat 1 55 0 1381 183 32 8 chr1 202391741 202391993 -40272360 + AluJo SINE Alu 9 266 -46 1424 141 206 4 chr1 202392773 202392888 -40271465 + AluJo SINE Alu 2 93 -209 309 26 0 0 chr1 202392888 202392926 -40271427 + (CA)n Simple_repeat Simple_repeat 1 38 0 1424 141 206 4 chr1 202392926 202393058 -40271295 + AluJo SINE Alu 93 299 -3 2365 88 0 0 chr1 202393219 202393514 -40270839 + AluSx SINE Alu 3 297 -15 367 344 47 8 chr1 202394168 202394296 -40270057 - L2 LINE L2 -18 3254 3122 473 183 12 0 chr1 202394311 202394393 -40269960 - LTR49 LTR ERV1 0 595 513 1371 141 0 74 chr1 202394422 202394488 -40269865 + AluJb SINE Alu 84 153 -159 2239 108 3 0 chr1 202394488 202394784 -40269569 + AluSg SINE Alu 1 297 -13 1371 141 0 74 chr1 202394784 202394959 -40269394 + AluJb SINE Alu 153 307 -5 1350 183 187 62 chr1 202394965 202395468 -40268885 - LTR48B LTR ERV1 -78 566 1 184 299 90 96 chr1 202395500 202395677 -40268676 - L2 LINE L2 -182 3090 2915 192 40 0 0 chr1 202395692 202395717 -40268636 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 519 145 35 89 chr1 202395845 202396066 -40268287 + MER89 LTR ERV1 1 307 -252 7849 121 24 50 chr1 202396066 202396653 -40267700 - HSMAR2 DNA Mariner 0 1302 702 782 172 0 0 chr1 202396653 202396769 -40267584 - FLAM_A SINE Alu -17 116 1 7849 121 24 50 chr1 202396769 202397174 -40267179 - HSMAR2 DNA Mariner -600 702 350 2371 96 0 0 chr1 202397174 202397477 -40266876 - AluSc SINE Alu -6 303 1 7849 121 24 50 chr1 202397477 202397817 -40266536 - HSMAR2 DNA Mariner -952 350 3 934 172 0 0 chr1 202397916 202398073 -40266280 + MER89 LTR ERV1 403 559 0 793 217 28 76 chr1 202398091 202398340 -40266013 - Charlie2 DNA MER1_type -2461 321 85 1448 196 50 17 chr1 202398377 202398678 -40265675 - AluJb SINE Alu -1 311 1 295 252 145 30 chr1 202398778 202398909 -40265444 + L2 LINE L2 3168 3313 0 260 360 89 19 chr1 202398901 202399115 -40265238 - L2 LINE L2 -1845 1469 1241 * 1817 201 160 20 chr1 202399232 202399675 -40264678 + MLT1D LTR MaLR 1 505 0 394 167 0 42 chr1 202399734 202399806 -40264547 - MER5A DNA MER1_type -80 109 41 1994 173 68 34 chr1 202400046 202400490 -40263863 + LTR2B LTR ERV1 32 490 0 2285 84 10 0 chr1 202400554 202400851 -40263502 - AluSq SINE Alu -13 300 1 226 276 95 60 chr1 202401245 202401361 -40262992 - L2 LINE L2 -19 3294 3175 237 266 156 0 chr1 202402078 202402142 -40262211 + L1MC1 LINE L1 6158 6231 -102 409 202 22 11 chr1 202402142 202402231 -40262122 + L1MC2 LINE L1 6244 6333 -11 187 328 0 16 chr1 202402839 202402900 -40261453 + L2 LINE L2 3254 3313 0 492 188 16 39 chr1 202402993 202403121 -40261232 - L1MC2 LINE L1 -278 6066 5942 * 2186 180 54 25 chr1 202403107 202403759 -40260594 - L1MC2 LINE L1 -745 5401 5043 29 0 0 0 chr1 202403762 202403791 -40260562 + AT_rich Low_complexity Low_complexity 1 29 0 327 192 154 0 chr1 202403819 202403897 -40260456 - AluJ/FLAM SINE Alu -210 92 3 22 0 0 30 chr1 202403897 202403913 -40260440 + AT_rich Low_complexity Low_complexity 1 16 -16 2436 52 7 10 chr1 202403913 202404222 -40260131 - AluY SINE Alu -3 308 1 22 0 0 30 chr1 202404222 202404238 -40260115 + AT_rich Low_complexity Low_complexity 16 32 0 2559 129 43 21 chr1 202404655 202405074 -40259279 - MSTA LTR MaLR 0 428 1 214 288 0 106 chr1 202405144 202405314 -40259039 - L2 LINE L2 -644 2670 2519 859 171 0 0 chr1 202405352 202405475 -40258878 + FLAM_A SINE Alu 1 123 -10 235 264 8 85 chr1 202405540 202405669 -40258684 - L2 LINE L2 -911 2403 2285 3727 152 79 30 chr1 202405776 202406469 -40257884 - LTR8A LTR ERV1 0 727 1 2060 114 0 0 chr1 202406853 202407142 -40257211 + AluSx SINE Alu 22 310 -2 1930 180 101 49 chr1 202407202 202407669 -40256684 - MLT1D LTR MaLR -10 495 5 1918 140 15 0 chr1 202407935 202408207 -40256146 - AluSx SINE Alu -18 294 19 3697 150 16 4 chr1 202408891 202409506 -40254847 - MER41B LTR ERV1 -15 597 1 1162 200 98 14 chr1 202409507 202409802 -40254551 - L1MB8 LINE L1 -99 6079 5760 982 118 0 77 chr1 202409891 202409940 -40254413 - MSTB1 LTR MaLR 0 432 381 1912 137 7 11 chr1 202409940 202410260 -40254093 - AluSp SINE Alu 0 319 1 982 118 0 77 chr1 202410260 202410379 -40253974 - MSTB1 LTR MaLR -51 381 276 611 290 55 34 chr1 202410726 202410813 -40253540 - MIR SINE MIR -10 252 168 2059 132 85 20 chr1 202410813 202411155 -40253198 + THE1B LTR MaLR 1 364 0 12289 75 9 7 chr1 202411155 202411256 -40253097 + THE1B-int LTR MaLR 1 100 -1480 2342 115 0 0 chr1 202411256 202411560 -40252793 + AluSp SINE Alu 1 304 -9 12289 75 9 7 chr1 202411560 202413034 -40251319 + THE1B-int LTR MaLR 100 1580 0 2186 123 76 18 chr1 202413036 202413378 -40250975 + THE1B LTR MaLR 3 364 0 611 290 55 34 chr1 202413378 202413529 -40250824 - MIR SINE MIR -94 168 6 1659 170 36 4 chr1 202413556 202413833 -40250520 + AluJo SINE Alu 5 290 -22 1050 190 4 77 chr1 202414311 202414585 -40249768 - AluJb SINE Alu -9 303 50 862 202 75 24 chr1 202414785 202415037 -40249316 - MER33 DNA MER1_type -1 323 59 2176 97 7 16 chr1 202415038 202415347 -40249006 - AluSq SINE Alu -7 306 1 1456 168 121 7 chr1 202415760 202416040 -40248313 + AluSx SINE Alu 1 312 0 3342 115 65 2 chr1 202416104 202416624 -40247729 - MER41A LTR ERV1 0 554 2 525 110 0 0 chr1 202416894 202416967 -40247386 - AluSg/x SINE Alu -24 285 213 906 82 8 43 chr1 202416989 202417358 -40246995 + (TA)n Simple_repeat Simple_repeat 1 356 0 288 0 0 0 chr1 202417358 202417390 -40246963 + (CA)n Simple_repeat Simple_repeat 2 33 0 1747 107 123 4 chr1 202417837 202418098 -40246255 - AluSg SINE Alu -18 292 1 1820 129 23 0 chr1 202418171 202418461 -40245892 + AluSg SINE Alu 13 308 0 21 82 0 0 chr1 202418753 202418802 -40245551 + AT_rich Low_complexity Low_complexity 1 49 0 1914 139 0 21 chr1 202419119 202419430 -40244923 + AluSx SINE Alu 1 305 0 2210 91 0 32 chr1 202419448 202419757 -40244596 + AluSg SINE Alu 1 299 -11 180 327 106 0 chr1 202419838 202419942 -40244411 - L2 LINE L2 -39 3233 3119 2344 85 0 35 chr1 202420083 202420402 -40243951 + AluSg SINE Alu 1 308 -2 724 209 94 25 chr1 202421397 202421598 -40242755 - MER20 DNA MER1_type -4 215 1 2396 90 0 0 chr1 202422279 202422580 -40241773 - AluY SINE Alu -10 301 1 2420 59 0 16 chr1 202422649 202422952 -40241401 - AluY SINE Alu -13 298 1 1456 206 35 7 chr1 202423015 202423301 -40241052 + AluJo SINE Alu 3 296 -16 289 294 19 44 chr1 202423302 202423462 -40240891 - L1MC4 LINE L1 -17 8025 7870 236 217 0 0 chr1 202424032 202424078 -40240275 + MIR SINE MIR 81 126 -82 21 89 0 0 chr1 202424916 202424972 -40239381 + AT_rich Low_complexity Low_complexity 1 56 0 188 67 0 0 chr1 202425526 202425556 -40238797 - L2 LINE L2 0 3313 3284 21 57 0 0 chr1 202425823 202425858 -40238495 + GC_rich Low_complexity Low_complexity 1 35 0 182 135 27 0 chr1 202426057 202426094 -40238259 - L2 LINE L2 -5 3267 3230 189 220 38 0 chr1 202426136 202426180 -40238173 - MIR SINE MIR -65 153 47 192 286 120 30 chr1 202427669 202427756 -40236597 + MIR SINE MIR 64 168 -94 5603 131 14 10 chr1 202427756 202428815 -40235538 + L1PA12 LINE L1 5105 6167 -1 192 286 120 30 chr1 202428815 202428860 -40235493 + MIR SINE MIR 168 208 -54 202 321 18 55 chr1 202428910 202429019 -40235334 + L2 LINE L2 3187 3291 -22 198 71 0 0 chr1 202429129 202429157 -40235196 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 951 239 94 78 chr1 202429694 202429852 -40234501 + L2 LINE L2 2472 2626 -687 2485 65 10 0 chr1 202429852 202430159 -40234194 - AluY SINE Alu -1 310 1 2015 105 66 3 chr1 202430159 202430444 -40233909 - AluSx SINE Alu -7 305 2 951 239 94 78 chr1 202430444 202430522 -40233831 + L2 LINE L2 2626 2701 -612 234 0 0 0 chr1 202430522 202430548 -40233805 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2262 92 0 0 chr1 202430551 202430833 -40233520 - AluSx SINE Alu -30 282 1 951 239 94 78 chr1 202430833 202431418 -40232935 + L2 LINE L2 2702 3311 -2 314 98 0 0 chr1 202431454 202431495 -40232858 + FAM SINE Alu 116 156 -23 447 19 0 0 chr1 202431498 202431550 -40232803 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1048 209 0 19 chr1 202431558 202431773 -40232580 + AluJo SINE Alu 1 211 -101 22 0 0 0 chr1 202432309 202432331 -40232022 + GC_rich Low_complexity Low_complexity 1 22 0 339 113 0 0 chr1 202432767 202432829 -40231524 + (CAG)n Simple_repeat Simple_repeat 3 64 0 231 36 0 0 chr1 202435427 202435455 -40228898 + (CA)n Simple_repeat Simple_repeat 1 28 0 231 257 0 54 chr1 202436137 202436211 -40228142 - MIR SINE MIR -93 115 46 2586 50 0 0 chr1 202437401 202437698 -40226655 - AluY SINE Alu -14 297 1 484 209 93 28 chr1 202437804 202437986 -40226367 - MIR SINE MIR -11 251 58 2014 120 4 0 chr1 202438141 202438417 -40225936 - AluSq SINE Alu -8 305 29 192 325 79 18 chr1 202439080 202439194 -40225159 + MIR SINE MIR 124 244 -18 201 39 0 0 chr1 202439343 202439369 -40224984 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 383 68 17 0 chr1 202441535 202441594 -40222759 + (TG)n Simple_repeat Simple_repeat 2 61 0 1241 147 0 55 chr1 202441594 202441812 -40222541 - AluJo SINE Alu -28 284 79 2199 123 0 3 chr1 202442908 202443209 -40221144 - AluSx SINE Alu -12 300 1 2484 41 3 7 chr1 202443930 202444221 -40220132 - AluY SINE Alu -21 290 1 34 55 0 0 chr1 202444249 202444304 -40220049 + AT_rich Low_complexity Low_complexity 1 55 0 324 317 73 4 chr1 202444925 202445138 -40219215 - L1M4 LINE L1 -407 5777 5550 2294 106 3 3 chr1 202445141 202445452 -40218901 - AluSx SINE Alu -1 311 1 349 302 43 40 chr1 202445452 202445780 -40218573 - L1M4 LINE L1 -1489 4657 4329 191 292 112 80 chr1 202446379 202446691 -40217662 + L2 LINE L2 2217 2538 -776 2324 86 7 3 chr1 202446726 202447027 -40217326 - AluSq SINE Alu -11 302 1 279 354 125 5 chr1 202447178 202447370 -40216983 + L3 LINE CR1 1357 1571 -6 2292 98 0 0 chr1 202448797 202449084 -40215269 + AluSx SINE Alu 1 287 -25 356 303 18 0 chr1 202449242 202449351 -40215002 + MIR3 SINE MIR 83 193 -15 213 39 0 0 chr1 202449896 202449922 -40214431 + (TTA)n Simple_repeat Simple_repeat 1 26 0 231 295 29 97 chr1 202450226 202450404 -40213949 + MIR SINE MIR 10 174 -78 466 252 112 44 chr1 202451114 202451297 -40213056 - MIR SINE MIR 0 262 62 4138 86 5 16 chr1 202451297 202451857 -40212496 - MER41A LTR ERV1 0 554 1 466 252 112 44 chr1 202451857 202451879 -40212474 - MIR SINE MIR -200 62 43 2358 88 3 0 chr1 202452174 202452471 -40211882 - AluSc SINE Alu -9 300 3 2260 94 20 0 chr1 202453325 202453623 -40210730 + AluSx SINE Alu 1 304 -8 329 235 73 103 chr1 202454069 202454341 -40210012 - L1MC5 LINE L1 -74 7887 7624 235 222 105 62 chr1 202454601 202454696 -40209657 - L1MC4 LINE L1 -737 7224 7135 2422 89 0 7 chr1 202454696 202454999 -40209354 - AluSc SINE Alu -8 301 1 235 222 105 62 chr1 202454999 202455222 -40209131 - L1MC4 LINE L1 -826 7135 6911 274 257 0 14 chr1 202455363 202455437 -40208916 - MIR SINE MIR -26 236 164 387 211 32 11 chr1 202455457 202455552 -40208801 - L1ME LINE L1 -454 5667 5571 2604 171 6 29 chr1 202455721 202456236 -40208117 - MER41B LTR ERV1 -9 597 134 281 207 69 0 chr1 202456329 202456387 -40207966 - MLT1G1 LTR MaLR -424 171 110 326 298 81 32 chr1 202456393 202456641 -40207712 - L2 LINE L2 -1115 2199 1940 951 197 0 11 chr1 202456641 202456824 -40207529 + AluJo SINE Alu 127 307 -5 962 308 156 25 chr1 202456845 202457755 -40206598 - L2 LINE L2 -1431 1883 855 503 284 186 14 chr1 202457777 202458215 -40206138 - L2 LINE L2 0 3313 2777 1921 171 30 19 chr1 202458215 202458584 -40205769 - MER83C LTR ERV1 0 373 1 503 284 186 14 chr1 202458584 202458643 -40205710 - L2 LINE L2 -536 2777 2729 844 306 51 55 chr1 202458645 202459091 -40205262 - L2 LINE L2 -2459 855 410 2393 81 0 3 chr1 202459091 202459388 -40204965 + AluSg SINE Alu 1 296 -14 844 306 51 55 chr1 202459388 202459487 -40204866 - L2 LINE L2 -2904 410 312 733 188 49 90 chr1 202459492 202459715 -40204638 + MER20 DNA MER1_type 5 218 -1 761 178 45 13 chr1 202460315 202460472 -40203881 + MER58C DNA MER1_type 44 205 -10 1888 142 35 10 chr1 202460919 202461207 -40203146 + AluSx SINE Alu 1 295 -17 234 258 367 0 chr1 202461237 202461365 -40202988 - MER5B DNA MER1_type -3 175 1 2417 59 3 43 chr1 202461410 202461732 -40202621 - AluY SINE Alu -2 309 1 279 0 0 0 chr1 202461779 202461810 -40202543 + (A)n Simple_repeat Simple_repeat 1 31 0 208 135 0 0 chr1 202462106 202462143 -40202210 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 1070 119 7 0 chr1 202462143 202462294 -40202059 - AluSq SINE Alu -24 289 138 270 0 0 0 chr1 202462294 202462324 -40202029 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2079 83 3 66 chr1 202462324 202462626 -40201727 - AluSq SINE Alu -30 283 1 1099 223 127 19 chr1 202462679 202462939 -40201414 + AluJo SINE Alu 2 289 -13 228 67 0 0 chr1 202463549 202463579 -40200774 + (A)n Simple_repeat Simple_repeat 1 30 0 3292 114 7 59 chr1 202463689 202464233 -40200120 - L1MB3 LINE L1 -2 6181 5666 2334 95 0 0 chr1 202464713 202465009 -40199344 - AluSg SINE Alu -14 296 1 251 287 11 46 chr1 202466733 202466820 -40197533 - L2 LINE L2 -1 3271 3188 744 119 0 37 chr1 202467165 202467274 -40197079 - AluSx SINE Alu -14 296 192 1018 117 7 0 chr1 202467278 202467415 -40196938 - AluSx SINE Alu -175 138 1 478 247 47 132 chr1 202467428 202467534 -40196819 - L2 LINE L2 -554 2760 2647 1807 166 0 7 chr1 202467534 202467823 -40196530 - AluJo SINE Alu -25 287 1 478 247 47 132 chr1 202467823 202468141 -40196212 - L2 LINE L2 -667 2647 2372 2129 131 0 0 chr1 202468919 202469217 -40195136 - AluSx SINE Alu -14 298 1 2244 105 17 0 chr1 202469549 202469845 -40194508 - AluSx SINE Alu -11 301 1 1920 144 0 3 chr1 202470340 202470647 -40193706 - AluSx SINE Alu 0 306 1 265 328 172 5 chr1 202471078 202471282 -40193071 + MIR SINE MIR 8 245 -17 2261 96 3 10 chr1 202471468 202471769 -40192584 + AluSx SINE Alu 1 299 -13 236 360 194 8 chr1 202471899 202472260 -40192093 - L2 LINE L2 -558 2756 2329 996 191 27 50 chr1 202472966 202473186 -40191167 + MER20 DNA MER1_type 2 216 -3 1546 178 13 30 chr1 202473211 202473514 -40190839 - AluJo SINE Alu -14 298 1 326 301 188 14 chr1 202473968 202474181 -40190172 + MIR SINE MIR 10 259 -3 1809 160 19 22 chr1 202474379 202474692 -40189661 + AluJo SINE Alu 1 312 0 2224 117 7 0 chr1 202475722 202476022 -40188331 - AluSx SINE Alu -10 302 1 2339 95 3 0 chr1 202476834 202477138 -40187215 + AluSg SINE Alu 1 305 -5 1079 206 13 31 chr1 202477316 202477544 -40186809 - MER58A DNA MER1_type 0 224 1 185 288 53 98 chr1 202477719 202477853 -40186500 - L2 LINE L2 -352 2962 2824 1981 109 95 0 chr1 202477853 202478137 -40186216 + AluSx SINE Alu 1 311 -1 185 288 53 98 chr1 202478137 202478432 -40185921 - L2 LINE L2 -490 2824 2552 2159 118 0 23 chr1 202478461 202478766 -40185587 + AluSx SINE Alu 1 298 -14 995 159 34 0 chr1 202479006 202479182 -40185171 - MER5A DNA MER1_type -7 182 1 367 312 85 39 chr1 202479225 202479507 -40184846 - L2 LINE L2 -820 2494 2200 469 240 70 8 chr1 202480301 202480430 -40183923 - MIR SINE MIR -24 238 102 224 291 142 61 chr1 202480878 202481026 -40183327 - MIR3 SINE MIR -8 200 41 1944 113 0 60 chr1 202481388 202481713 -40182640 - AluSx SINE Alu 0 307 1 207 0 0 0 chr1 202482519 202482542 -40181811 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 228 286 0 0 chr1 202483504 202483560 -40180793 + CT-rich Low_complexity Low_complexity 5 60 0 1241 193 117 8 chr1 202485574 202485838 -40178515 - AluSg1 SINE Alu -1 308 16 2225 92 0 36 chr1 202486154 202486458 -40177895 + AluY SINE Alu 10 302 -9 1749 119 0 4 chr1 202486464 202486700 -40177653 + AluSx SINE Alu 1 235 -77 204 40 0 0 chr1 202486709 202486734 -40177619 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 473 301 94 33 chr1 202487160 202487373 -40176980 - MIR SINE MIR -17 245 20 348 335 46 23 chr1 202487402 202487536 -40176817 + L2 LINE L2 2553 2693 -621 937 213 0 12 chr1 202487536 202487700 -40176653 - FRAM SINE Alu -4 162 1 348 335 46 23 chr1 202487700 202487738 -40176615 + L2 LINE L2 2693 2729 -585 301 323 28 12 chr1 202487858 202487965 -40176388 - MER5A DNA MER1_type -35 143 44 745 105 22 33 chr1 202488221 202488402 -40175951 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 * 871 137 0 11 chr1 202488386 202488568 -40175785 + (GA)n Simple_repeat Simple_repeat 1 180 0 2481 57 27 0 chr1 202488742 202489043 -40175310 + AluY SINE Alu 1 309 -2 1956 153 0 13 chr1 202491806 202492114 -40172239 - AluJo SINE Alu -8 304 1 280 254 236 0 chr1 202492977 202493087 -40171266 + MIR SINE MIR 78 213 -49 1531 169 93 18 chr1 202493429 202493707 -40170646 - AluJo SINE Alu -3 299 1 2100 104 30 0 chr1 202493878 202494175 -40170178 + AluSx SINE Alu 1 306 -6 286 354 48 38 chr1 202494300 202494591 -40169762 - L2 LINE L2 -143 3129 2836 750 99 8 83 chr1 202494695 202494816 -40169537 - HY1 scRNA scRNA 0 112 1 366 156 0 0 chr1 202494861 202494925 -40169428 + CT-rich Low_complexity Low_complexity 1 64 0 1727 178 7 14 chr1 202494940 202495233 -40169120 - AluJb SINE Alu -21 291 1 1422 193 35 21 chr1 202495330 202495620 -40168733 - AluJo SINE Alu -18 294 1 1516 176 37 7 chr1 202496000 202496121 -40168232 + AluJo SINE Alu 1 117 -195 180 0 0 0 chr1 202496121 202496141 -40168212 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1516 176 37 7 chr1 202496141 202496291 -40168062 + AluJo SINE Alu 117 280 -32 229 149 30 30 chr1 202497611 202497678 -40166675 + GA-rich Low_complexity Low_complexity 3 69 0 261 201 26 0 chr1 202497749 202497812 -40166541 - MIR SINE MIR -41 167 101 1095 184 0 41 chr1 202497898 202498094 -40166259 + AluJo SINE Alu 1 188 -124 23 0 0 0 chr1 202498102 202498125 -40166228 + AT_rich Low_complexity Low_complexity 1 23 0 208 197 171 13 chr1 202498343 202498419 -40165934 + MIR SINE MIR 31 118 -90 543 112 0 0 chr1 202499930 202500019 -40164334 + (TA)n Simple_repeat Simple_repeat 1 89 0 276 30 0 0 chr1 202500018 202500051 -40164302 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 21 36 0 0 chr1 202500086 202500114 -40164239 + AT_rich Low_complexity Low_complexity 1 28 0 2769 258 74 72 chr1 202500126 202501332 -40163021 + L1M4 LINE L1 3515 4726 -1420 1856 93 0 8 chr1 202501332 202501590 -40162763 + AluY SINE Alu 40 295 -16 2769 258 74 72 chr1 202501590 202502021 -40162332 + L1M4 LINE L1 4726 5155 -991 878 233 0 0 chr1 202502023 202502195 -40162158 + AluJb SINE Alu 131 302 -10 2283 104 0 0 chr1 202502227 202502524 -40161829 + AluSg SINE Alu 1 297 -13 1731 276 131 34 chr1 202502539 202503905 -40160448 - L1MEd LINE L1 -2687 3442 2209 1544 162 0 86 chr1 202503905 202504237 -40160116 - AluJo SINE Alu 0 311 6 1731 276 131 34 chr1 202504237 202505213 -40159140 - L1MEd LINE L1 -3920 2209 855 1684 164 3 23 chr1 202505213 202505512 -40158841 - AluJo SINE Alu -11 301 9 1731 276 131 34 chr1 202505512 202505649 -40158704 - L1MEd LINE L1 -5274 855 733 21 0 0 0 chr1 202505673 202505694 -40158659 + AT_rich Low_complexity Low_complexity 1 21 0 209 98 24 0 chr1 202506176 202506217 -40158136 + (TA)n Simple_repeat Simple_repeat 1 42 0 2166 123 0 0 chr1 202506280 202506573 -40157780 - AluSq SINE Alu -20 293 1 372 303 44 62 chr1 202506578 202506883 -40157470 - L1ME4a LINE L1 -210 5911 5613 2107 144 0 0 chr1 202506883 202507195 -40157158 + AluSx SINE Alu 1 312 0 372 303 44 62 chr1 202507195 202507295 -40157058 - L1ME4a LINE L1 -508 5613 5513 744 226 30 49 chr1 202507326 202507490 -40156863 - FRAM SINE Alu -5 161 1 1827 118 96 0 chr1 202507838 202508108 -40156245 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 202508206 202508228 -40156125 + AT_rich Low_complexity Low_complexity 1 22 0 1637 180 11 14 chr1 202508349 202508632 -40155721 + AluJo SINE Alu 1 282 -30 1660 111 0 0 chr1 202508974 202509190 -40155163 + AluSc SINE Alu 1 216 -93 1568 142 20 51 chr1 202509512 202509808 -40154545 - AluJb SINE Alu -15 297 11 24 0 0 0 chr1 202509875 202509899 -40154454 + AT_rich Low_complexity Low_complexity 1 24 0 219 69 0 0 chr1 202512233 202512262 -40152091 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 294 0 0 chr1 202512653 202512704 -40151649 - MIR SINE MIR -68 140 90 2363 106 0 0 chr1 202512967 202513279 -40151074 - AluSx SINE Alu 0 312 1 1621 195 3 35 chr1 202514395 202514708 -40149645 - AluJo SINE Alu -9 303 1 24 0 0 0 chr1 202514837 202514861 -40149492 + AT_rich Low_complexity Low_complexity 1 24 0 3864 173 16 6 chr1 202514861 202515548 -40148805 - L1MB2 LINE L1 -3 6168 5475 1108 150 86 0 chr1 202515554 202515741 -40148612 - AluJb SINE Alu -26 286 84 1789 158 25 17 chr1 202515758 202516282 -40148071 - L1MB2 LINE L1 -688 5495 4966 1625 186 44 0 chr1 202518479 202518775 -40145578 - AluJb SINE Alu -1 311 3 617 219 117 49 chr1 202519015 202519220 -40145133 + MIR SINE MIR 9 227 -35 22 35 0 0 chr1 202519226 202519255 -40145098 + AT_rich Low_complexity Low_complexity 1 29 0 2197 114 7 0 chr1 202520610 202520908 -40143445 - AluSx SINE Alu -10 302 3 2042 126 20 0 chr1 202521045 202521347 -40143006 - AluSx SINE Alu -4 308 1 185 95 95 24 chr1 202522053 202522095 -40142258 + L2 LINE L2 3268 3312 -1 1819 183 3 3 chr1 202522949 202523260 -40141093 - AluJb SINE Alu -1 311 1 305 165 35 35 chr1 202523449 202523564 -40140789 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 236 266 0 16 chr1 202523574 202523638 -40140715 - L1MC4 LINE L1 -1339 6703 6641 22 0 0 0 chr1 202523949 202523971 -40140382 + AT_rich Low_complexity Low_complexity 1 22 0 2045 68 90 0 chr1 202524280 202524559 -40139794 - AluSg SINE Alu -6 304 1 198 0 0 0 chr1 202524561 202524583 -40139770 + (T)n Simple_repeat Simple_repeat 1 22 0 378 185 59 5 chr1 202525030 202525414 -40138939 + CT-rich Low_complexity Low_complexity 1 404 0 371 170 63 13 chr1 202525426 202525585 -40138768 + CT-rich Low_complexity Low_complexity 4 170 0 272 158 63 24 chr1 202525597 202525724 -40138629 + CT-rich Low_complexity Low_complexity 3 134 0 684 283 89 68 chr1 202526824 202527354 -40136999 - L2 LINE L2 -3 3310 2752 2412 79 0 16 chr1 202527489 202527804 -40136549 + AluSg SINE Alu 1 310 0 181 336 269 8 chr1 202527884 202528003 -40136350 + MIR3 SINE MIR 38 187 -21 2434 123 19 27 chr1 202529234 202529601 -40134752 - THE1B LTR MaLR 0 364 1 182 313 91 10 chr1 202529874 202529973 -40134380 + MIR SINE MIR 35 141 -121 354 325 87 5 chr1 202530967 202531173 -40133180 - MIR SINE MIR -6 256 34 516 321 11 5 chr1 202534238 202534422 -40129931 + L2 LINE L2 2601 2785 -529 231 60 60 0 chr1 202534531 202534581 -40129772 + T-rich Low_complexity Low_complexity 2 54 0 630 269 31 46 chr1 202534761 202534843 -40129510 + MIR SINE MIR 6 88 -174 3050 176 32 2 chr1 202534843 202535370 -40128983 - MER67A LTR ERV1 0 543 1 630 269 31 46 chr1 202535370 202535547 -40128806 + MIR SINE MIR 88 261 -1 2901 213 52 11 chr1 202535595 202536216 -40128137 - MER82 DNA MER2_type -7 646 1 1660 169 44 10 chr1 202536240 202536536 -40127817 + AluJo SINE Alu 1 306 -6 836 161 50 78 chr1 202536890 202537007 -40127346 + MER5A DNA MER1_type 15 127 -62 1937 117 0 4 chr1 202537007 202537280 -40127073 - AluSq SINE Alu -4 309 38 836 161 50 78 chr1 202537280 202537342 -40127011 + MER5A DNA MER1_type 127 189 0 3749 191 101 26 chr1 202537428 202538228 -40126125 + MER21B LTR ERV1 3 862 -1 1695 86 14 0 chr1 202538263 202538473 -40125880 - AluSx SINE Alu -99 213 1 2237 91 0 0 chr1 202539329 202539615 -40124738 + AluSg SINE Alu 1 286 -24 26 64 0 0 chr1 202539765 202539812 -40124541 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr1 202542129 202542154 -40122199 + AT_rich Low_complexity Low_complexity 1 25 0 275 160 0 0 chr1 202543004 202543054 -40121299 - AluJo SINE Alu -2 299 250 1249 159 10 10 chr1 202543054 202543262 -40121091 - AluJo SINE Alu -99 213 6 4370 103 17 0 chr1 202543737 202544328 -40120025 + L1PA10 LINE L1 5563 6163 -5 691 203 8 0 chr1 202544823 202544946 -40119407 + FLAM_A SINE Alu 1 124 -9 2161 113 0 0 chr1 202544973 202545266 -40119087 + AluSq SINE Alu 1 293 -20 2693 48 0 0 chr1 202545956 202546265 -40118088 - AluY SINE Alu -2 309 1 1974 138 0 26 chr1 202546396 202546708 -40117645 - AluJo SINE Alu -8 304 1 24 0 0 0 chr1 202546850 202546874 -40117479 + AT_rich Low_complexity Low_complexity 1 24 0 2521 30 0 20 chr1 202549488 202549790 -40114563 - AluY SINE Alu -15 296 1 1746 208 25 0 chr1 202549802 202550119 -40114234 + MLT2B3 LTR ERVL 230 554 0 526 218 75 8 chr1 202550120 202550253 -40114100 - L1M4 LINE L1 -2352 3794 3653 2410 29 4 0 chr1 202550353 202550660 -40113693 + AluY SINE Alu 11 318 0 308 253 27 0 chr1 202551669 202551744 -40112609 + CT-rich Low_complexity Low_complexity 4 80 0 286 152 0 0 chr1 202553197 202553243 -40111110 + L2 LINE L2 3264 3309 -4 259 58 77 0 chr1 202553647 202553699 -40110654 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 2487 78 0 0 chr1 202554989 202555298 -40109055 + AluY SINE Alu 1 309 -2 1724 191 0 3 chr1 202555505 202555799 -40108554 + AluJb SINE Alu 3 295 -17 577 297 74 0 chr1 202556002 202556204 -40108149 - MIR SINE MIR -26 236 20 2256 116 0 0 chr1 202556427 202556728 -40107625 - AluSx SINE Alu -11 301 1 1906 56 4 9 chr1 202557450 202557681 -40106672 + AluSg SINE Alu 64 293 -17 2529 79 0 0 chr1 202558722 202559027 -40105326 + AluSc SINE Alu 1 305 -4 644 177 197 27 chr1 202559148 202559295 -40105058 + FAM SINE Alu 1 172 -13 1769 167 0 13 chr1 202560370 202560676 -40103677 - AluJb SINE Alu -8 304 3 1112 257 69 20 chr1 202560812 202561162 -40103191 + L1M4 LINE L1 29 395 -6464 282 29 0 0 chr1 202561381 202561416 -40102937 + (TG)n Simple_repeat Simple_repeat 2 36 0 19323 92 9 11 chr1 202561436 202562568 -40101785 - L1PA7 LINE L1 0 6154 5021 1755 121 8 42 chr1 202562568 202562832 -40101521 - AluSx SINE Alu -12 300 46 19323 92 9 11 chr1 202562832 202565350 -40099003 - L1PA7 LINE L1 -1133 5021 2511 2172 171 75 2 chr1 202565373 202565801 -40098552 - LOR1b LTR ERV1 -2 459 1 2046 231 64 26 chr1 202566197 202567232 -40097121 + L1M4 LINE L1 1223 2287 -4672 587 161 0 0 chr1 202567448 202567541 -40096812 + FRAM SINE Alu 75 167 -9 348 24 0 0 chr1 202567601 202567642 -40096711 + (CA)n Simple_repeat Simple_repeat 2 42 0 3095 214 192 27 chr1 202567646 202568813 -40095540 + L1M4 LINE L1 4781 6140 -817 2394 82 3 0 chr1 202568813 202569104 -40095249 + AluSp SINE Alu 1 292 -21 3575 38 0 14 chr1 202569251 202569696 -40094657 + L1PA7 LINE L1 5716 6154 0 239 259 107 61 chr1 202569701 202569832 -40094521 + L2 LINE L2 1694 1830 -1484 1378 271 129 30 chr1 202569832 202570707 -40093646 + L2 LINE L2 2330 3310 -3 559 250 125 6 chr1 202571332 202571492 -40092861 + MIR SINE MIR 3 181 -81 190 344 125 23 chr1 202571579 202571707 -40092646 - L3 LINE CR1 -29 1548 1408 183 156 0 0 chr1 202572946 202572978 -40091375 + A-rich Low_complexity Low_complexity 1 32 0 1135 183 12 12 chr1 202572978 202573230 -40091123 + L1M4 LINE L1 6128 6379 -616 236 245 0 0 chr1 202573949 202573998 -40090355 + CT-rich Low_complexity Low_complexity 4 52 0 2073 105 44 10 chr1 202574271 202574565 -40089788 - AluSx SINE Alu -7 305 2 1935 136 3 35 chr1 202574655 202574972 -40089381 + AluJb SINE Alu 1 307 -5 2095 99 0 72 chr1 202576678 202577010 -40087343 - AluSc SINE Alu -1 308 1 2350 88 0 13 chr1 202577719 202578027 -40086326 + AluSx SINE Alu 1 304 -8 26 64 0 0 chr1 202579456 202579503 -40084850 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr1 202580009 202580030 -40084323 + AT_rich Low_complexity Low_complexity 1 21 0 1801 162 0 32 chr1 202580030 202580339 -40084014 - AluJo SINE Alu -11 301 3 2258 167 21 35 chr1 202581062 202581494 -40082859 - MSTB LTR MaLR 0 426 1 209 333 0 0 chr1 202582289 202582352 -40082001 - L2 LINE L2 0 3313 3251 573 261 55 18 chr1 202583513 202583731 -40080622 + L1ME3 LINE L1 5912 6137 -25 470 295 148 0 chr1 202584807 202584990 -40079363 + MIR SINE MIR 3 212 -50 25 31 0 0 chr1 202585847 202585879 -40078474 + AT_rich Low_complexity Low_complexity 1 32 0 2444 142 16 157 chr1 202587346 202587809 -40076544 - L1MA9 LINE L1 -186 6126 5738 271 153 0 51 chr1 202587809 202587868 -40076485 + U4 snRNA snRNA 7 62 -83 2444 142 16 157 chr1 202587868 202588086 -40076267 - L1MA9 LINE L1 -574 5738 5491 * 7063 148 37 15 chr1 202588085 202589615 -40074738 + L1MA9 LINE L1 3943 5500 -743 1705 155 82 3 chr1 202590171 202590488 -40073865 - L1P4 LINE L1 -507 5659 5318 979 112 89 6 chr1 202590492 202590671 -40073682 + MER6 DNA MER2_type 631 824 -41 2675 65 8 0 chr1 202590676 202591029 -40073324 - L1PA13 LINE L1 -4 6159 5804 2300 210 14 20 chr1 202591029 202591614 -40072739 - L1P4 LINE L1 -814 5332 4752 1522 128 20 0 chr1 202591616 202591866 -40072487 + L1PA16 LINE L1 5659 5913 -253 637 171 89 38 chr1 202591870 202592028 -40072325 + L1P LINE L1 4797 4962 -1184 1465 115 28 24 chr1 202592048 202592301 -40072052 + L1PA16 LINE L1 5913 6166 0 419 267 0 0 chr1 202592574 202592660 -40071693 - MIR SINE MIR -71 137 52 658 197 22 7 chr1 202592660 202592797 -40071556 - MLT1A2 LTR MaLR 0 374 236 562 151 0 186 chr1 202592801 202592973 -40071380 - Tigger3(Golem) DNA MER2_type -199 2830 1 2854 96 0 0 chr1 202593545 202593932 -40070421 + L1PA7 LINE L1 5768 6154 0 2210 110 10 0 chr1 202595259 202595560 -40068793 + AluSx SINE Alu 5 308 -4 340 20 0 40 chr1 202596187 202596237 -40068116 + L1PA5 LINE L1 6107 6154 0 182 406 0 10 chr1 202596980 202597076 -40067277 + MIR SINE MIR 46 140 -122 4495 146 5 8 chr1 202597079 202598347 -40066006 + L1PB1 LINE L1 4671 5933 -218 1888 55 16 12 chr1 202598447 202598703 -40065650 + L1PB1 LINE L1 5893 6149 -2 23 0 0 0 chr1 202598951 202598974 -40065379 + AT_rich Low_complexity Low_complexity 1 23 0 1151 196 26 67 chr1 202599849 202600195 -40064158 + MLT1A1 LTR MaLR 34 365 0 1989 128 0 46 chr1 202601679 202602006 -40062347 - AluSx SINE Alu 0 312 1 360 340 161 37 chr1 202602328 202603010 -40061343 + L2 LINE L2 1875 2641 -673 370 200 0 14 chr1 202603021 202603091 -40061262 + MER5A DNA MER1_type 1 69 -120 14020 171 30 35 chr1 202603104 202604145 -40060208 + L1MA4A LINE L1 3 1049 -5800 188 65 0 32 chr1 202604145 202604176 -40060177 + (CCCA)n Simple_repeat Simple_repeat 3 32 0 14020 171 30 35 chr1 202604176 202605192 -40059161 + L1MA4A LINE L1 1049 2069 -4780 2115 111 0 57 chr1 202605192 202605507 -40058846 + AluSc SINE Alu 1 297 -12 14020 171 30 35 chr1 202605507 202606252 -40058101 + L1MA4A LINE L1 2069 2791 -4058 2163 136 0 0 chr1 202606252 202606562 -40057791 + AluSx SINE Alu 1 310 -2 14020 171 30 35 chr1 202606562 202606655 -40057698 + L1MA4A LINE L1 2791 2883 -3966 12708 181 42 42 chr1 202606665 202609499 -40054854 + L1MA4A LINE L1 3106 5941 -1064 264 100 0 0 chr1 202609499 202609539 -40054814 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 12708 181 42 42 chr1 202609539 202609979 -40054374 + L1MA4A LINE L1 5941 6377 -628 271 65 43 0 chr1 202609979 202610025 -40054328 + (TA)n Simple_repeat Simple_repeat 2 49 0 12708 181 42 42 chr1 202610025 202610417 -40053936 + L1MA4A LINE L1 6377 6768 -237 2155 121 3 0 chr1 202610685 202610982 -40053371 - AluSp SINE Alu -15 298 1 349 263 218 0 chr1 202611496 202611629 -40052724 - MER5A DNA MER1_type 0 189 28 194 318 45 38 chr1 202611642 202611774 -40052579 + MIR SINE MIR 63 195 -67 566 208 0 9 chr1 202611779 202611885 -40052468 - FRAM SINE Alu -67 109 5 2419 84 0 0 chr1 202611993 202612304 -40052049 - AluY SINE Alu 0 311 1 227 203 84 133 chr1 202612384 202612527 -40051826 + MLT1J LTR MaLR 323 458 -53 205 276 0 52 chr1 202612541 202612599 -40051754 - L2 LINE L2 -12 3260 3206 198 333 148 0 chr1 202613217 202613298 -40051055 + L2 LINE L2 3179 3271 -1 307 241 127 63 chr1 202613364 202613522 -40050831 + MER5B DNA MER1_type 11 178 0 232 332 26 26 chr1 202614396 202614514 -40049839 + MIR SINE MIR 37 153 -66 979 69 0 0 chr1 202615845 202615976 -40048377 - L1P3 LINE L1 -713 5441 5311 506 158 61 0 chr1 202616078 202616160 -40048193 + AluJ/FLAM SINE Alu 11 97 -215 574 242 130 46 chr1 202616177 202616462 -40047891 - L2 LINE L2 -2032 1282 974 2359 103 0 6 chr1 202617564 202617876 -40046477 - AluSx SINE Alu -2 310 1 447 263 26 0 chr1 202621469 202621583 -40042770 + L2 LINE L2 3197 3313 0 322 345 31 49 chr1 202622120 202622343 -40042010 - MIR SINE MIR -12 250 32 292 251 96 75 chr1 202623893 202624080 -40040273 + MLT1J LTR MaLR 105 295 -216 334 236 146 0 chr1 202625000 202625165 -40039188 - HAL1 LINE L1 -1270 1237 1049 1531 265 173 21 chr1 202625165 202625912 -40038441 - L2 LINE L2 -681 2633 1774 935 286 109 40 chr1 202625929 202626537 -40037816 - HAL1 LINE L1 -1590 917 268 527 264 47 0 chr1 202626607 202626755 -40037598 - HAL1 LINE L1 -2348 159 5 429 248 88 29 chr1 202627770 202627907 -40036446 - MIR SINE MIR -1 261 117 1413 288 77 23 chr1 202628577 202629133 -40035220 + MLT1E LTR MaLR 1 586 -7 1613 171 0 41 chr1 202629427 202629719 -40034634 + AluJo SINE Alu 1 280 -32 212 291 127 22 chr1 202630587 202630721 -40033632 - MIR SINE MIR -56 206 59 2109 108 3 72 chr1 202630822 202631155 -40033198 - AluSx SINE Alu -2 310 1 211 318 134 70 chr1 202631942 202632143 -40032210 - MIR SINE MIR -28 234 21 305 145 16 0 chr1 202632318 202632380 -40031973 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 25 0 0 0 chr1 202635156 202635181 -40029172 + AT_rich Low_complexity Low_complexity 1 25 0 387 41 0 0 chr1 202635228 202635277 -40029076 + (CA)n Simple_repeat Simple_repeat 1 49 0 3720 147 73 0 chr1 202635328 202636053 -40028300 - L1MA9 LINE L1 -40 6272 5400 397 223 85 11 chr1 202636060 202636154 -40028199 - MIR SINE MIR -105 157 57 21 0 0 0 chr1 202636235 202636256 -40028097 + AT_rich Low_complexity Low_complexity 1 21 0 329 291 128 0 chr1 202636333 202636474 -40027879 - MER113 DNA MER1_type? -34 487 329 216 0 0 0 chr1 202636480 202636504 -40027849 + (T)n Simple_repeat Simple_repeat 1 24 0 2285 95 3 7 chr1 202637354 202637660 -40026693 + AluSg SINE Alu 1 305 -5 1782 189 28 11 chr1 202637787 202638146 -40026207 - MLT1A1 LTR MaLR 0 365 1 188 374 33 55 chr1 202638394 202638485 -40025868 + L2 LINE L2 3187 3275 -38 2102 153 0 26 chr1 202638510 202638856 -40025497 + MER1B DNA MER1_type 1 337 0 2089 120 10 0 chr1 202638997 202639288 -40025065 - AluSx SINE Alu -18 294 1 842 270 107 46 chr1 202640776 202642282 -40022071 - L1MDb LINE L1 -3682 2447 850 295 317 106 13 chr1 202642396 202642699 -40021654 + L1ME LINE L1 5259 5589 -532 8805 171 27 29 chr1 202643291 202645077 -40019276 - L1M4c LINE L1 -4585 1799 18 512 256 32 32 chr1 202645070 202645289 -40019064 - L1MDb LINE L1 -5243 876 658 * 2340 101 0 0 chr1 202645990 202646286 -40018067 - AluSg SINE Alu -14 296 1 4999 173 35 5 chr1 202646301 202648015 -40016338 - L1PA16 LINE L1 0 6166 4404 1368 300 110 30 chr1 202648077 202648442 -40015911 - L2 LINE L2 -188 3125 2791 1521 50 5 15 chr1 202648442 202648640 -40015713 - MER107 DNA MER1_type -1 196 1 1368 300 110 30 chr1 202648640 202649096 -40015257 - L2 LINE L2 -522 2791 2221 340 326 54 22 chr1 202649685 202649869 -40014484 - LTR41 LTR ERVL -583 190 1 22 70 0 0 chr1 202650174 202650217 -40014136 + AT_rich Low_complexity Low_complexity 1 43 0 968 164 7 0 chr1 202651882 202652028 -40012325 - FRAM SINE Alu -30 146 1 348 168 109 76 chr1 202702421 202702540 -39961813 - L1MA9 LINE L1 -38 6274 6152 501 172 84 106 chr1 202702550 202702748 -39961605 - L1MA9 LINE L1 -208 6092 5898 240 324 50 5 chr1 202703068 202703287 -39961066 - HAL1 LINE L1 -856 1651 1423 258 250 12 24 chr1 202703650 202703734 -39960619 - L1MDb LINE L1 -5937 182 100 22 0 0 0 chr1 202703831 202703853 -39960500 + AT_rich Low_complexity Low_complexity 1 22 0 1856 135 0 69 chr1 202704439 202704758 -39959595 - AluSx SINE Alu -15 297 1 2207 119 0 0 chr1 202705452 202705746 -39958607 + AluSx SINE Alu 1 294 -18 438 253 23 40 chr1 202705772 202705946 -39958407 + MER117 DNA MER1_type 6 176 -21 25 31 0 0 chr1 202706008 202706040 -39958313 + AT_rich Low_complexity Low_complexity 1 32 0 12890 138 31 53 chr1 202706177 202706401 -39957952 - Tigger1 DNA MER2_type 0 2418 2191 2064 117 3 0 chr1 202706401 202706691 -39957662 + AluSg SINE Alu 1 291 -19 12890 138 31 53 chr1 202706691 202708937 -39955416 - Tigger1 DNA MER2_type -227 2191 1 240 354 49 0 chr1 202709180 202709262 -39955091 + L2 LINE L2 2611 2696 -618 2540 246 40 52 chr1 202709274 202709942 -39954411 - L1MEc LINE L1 -3484 2898 2223 1707 191 12 20 chr1 202709942 202710287 -39954066 - MER2 DNA MER2_type -1 343 2 2540 246 40 52 chr1 202710287 202710882 -39953471 - L1MEc LINE L1 -4159 2223 1532 1202 221 75 80 chr1 202710882 202711347 -39953006 - MLT1D LTR MaLR 0 505 43 525 139 38 0 chr1 202711381 202711460 -39952893 - MLT1D LTR MaLR -423 82 1 1120 282 70 71 chr1 202711528 202711634 -39952719 - L1MEc LINE L1 -4790 1592 1487 2338 115 0 0 chr1 202711634 202711947 -39952406 - AluSq SINE Alu 0 313 1 1120 282 70 71 chr1 202711947 202713227 -39951126 - L1MEc LINE L1 -4895 1487 233 350 219 0 10 chr1 202713286 202713382 -39950971 + L1 LINE L1 3179 3273 -2873 9122 200 45 61 chr1 202713418 202714931 -39949422 + L1PB4 LINE L1 2425 3961 -2195 2053 136 0 0 chr1 202714931 202715226 -39949127 - AluSx SINE Alu -17 295 1 9122 200 45 61 chr1 202715226 202715895 -39948458 + L1PB4 LINE L1 3961 4639 -1517 2196 90 0 0 chr1 202715895 202716173 -39948180 + AluSx SINE Alu 21 298 -14 9122 200 45 61 chr1 202716173 202717801 -39946552 + L1PB4 LINE L1 4639 6151 -5 365 305 109 6 chr1 202718202 202718376 -39945977 + MIR SINE MIR 29 220 -42 21 36 0 0 chr1 202721075 202721103 -39943250 + AT_rich Low_complexity Low_complexity 1 28 0 2418 57 6 22 chr1 202721392 202721707 -39942646 + AluY SINE Alu 1 310 -1 234 0 0 0 chr1 202721722 202721748 -39942605 + (A)n Simple_repeat Simple_repeat 1 26 0 2081 95 0 0 chr1 202722109 202722371 -39941982 + AluSq SINE Alu 37 298 -15 1645 167 20 20 chr1 202723164 202723458 -39940895 + AluJo SINE Alu 1 294 -18 269 246 15 31 chr1 202724218 202724283 -39940070 - MIR SINE MIR -161 101 38 512 240 99 0 chr1 202725089 202725260 -39939093 - MER112 DNA MER1_type -5 255 68 744 206 12 6 chr1 202725676 202725841 -39938512 + MER82 DNA MER2_type 339 504 -149 1058 299 75 40 chr1 202726128 202726295 -39938058 - L1ME3 LINE L1 -229 5933 5773 2130 83 10 54 chr1 202726295 202726609 -39937744 - AluSp SINE Alu -13 300 1 1058 299 75 40 chr1 202726609 202727246 -39937107 - L1ME3 LINE L1 -389 5773 5159 2463 71 3 0 chr1 202727246 202727554 -39936799 + AluY SINE Alu 1 309 -2 1058 299 75 40 chr1 202727554 202728158 -39936195 - L1ME3 LINE L1 -1003 5159 4479 480 315 104 14 chr1 202729252 202729474 -39934879 + MIR SINE MIR 20 261 -1 554 273 21 0 chr1 202729603 202729746 -39934607 - MIR SINE MIR -26 236 91 315 0 0 0 chr1 202730130 202730165 -39934188 + (A)n Simple_repeat Simple_repeat 1 35 0 2092 108 3 3 chr1 202731789 202732085 -39932268 - AluSg SINE Alu -14 296 1 240 230 92 112 chr1 202732325 202732477 -39931876 - L2 LINE L2 -1 3312 3164 2112 136 13 16 chr1 202732634 202733010 -39931343 - THE1C LTR MaLR 0 375 1 1976 113 44 0 chr1 202733033 202733308 -39931045 + AluSx SINE Alu 1 287 -25 318 128 0 3 chr1 202733867 202733962 -39930391 + MER105 DNA DNA 27 151 -53 400 250 191 0 chr1 202733978 202734130 -39930223 + L2 LINE L2 3106 3286 -27 650 339 44 59 chr1 202734130 202734726 -39929627 + L2 LINE L2 1093 1679 -1635 3899 33 0 0 chr1 202734848 202735303 -39929050 + L1PA5 LINE L1 5691 6145 -9 441 66 0 0 chr1 202735303 202735364 -39928989 + (TA)n Simple_repeat Simple_repeat 2 62 0 292 331 164 35 chr1 202735578 202736290 -39928063 - L2 LINE L2 -665 2649 1846 280 268 113 0 chr1 202738296 202738393 -39925960 - MIR SINE MIR -107 155 48 219 230 162 54 chr1 202738939 202739013 -39925340 + L2 LINE L2 3232 3313 0 189 213 0 0 chr1 202739301 202739348 -39925005 + (TA)n Simple_repeat Simple_repeat 1 47 0 4314 125 11 19 chr1 202740235 202740965 -39923388 + Tigger1 DNA MER2_type 1 724 -1694 3184 110 8 2 chr1 202740979 202741461 -39922892 - LOR1a LTR ERV1 -12 485 1 9532 120 50 25 chr1 202741461 202741804 -39922549 + Tigger1 DNA MER2_type 716 1049 -1369 2199 119 0 0 chr1 202741804 202742107 -39922246 + AluSx SINE Alu 1 303 -9 9532 120 50 25 chr1 202742107 202743418 -39920935 + Tigger1 DNA MER2_type 1049 2411 -7 378 0 0 0 chr1 202743422 202743464 -39920889 + (TG)n Simple_repeat Simple_repeat 2 43 0 436 198 99 0 chr1 202743473 202743564 -39920789 - MLT2D LTR ERVL -64 400 301 5099 128 24 14 chr1 202743564 202744454 -39919899 - L1PA16 LINE L1 0 6166 5268 987 181 56 71 chr1 202744454 202744612 -39919741 - MLT2D LTR ERVL -152 262 108 2199 95 16 44 chr1 202744612 202744929 -39919424 + AluSq SINE Alu 1 308 -5 987 181 56 71 chr1 202744929 202745036 -39919317 - MLT2D LTR ERVL -306 108 1 1910 161 0 26 chr1 202745117 202745422 -39918931 - AluSx SINE Alu -15 297 1 1912 285 58 41 chr1 202746443 202747382 -39916971 + L1M4b LINE L1 62 1244 -5615 200 222 32 16 chr1 202747923 202747959 -39916394 + (CA)n Simple_repeat Simple_repeat 1 40 -24 2105 123 0 7 chr1 202747959 202748259 -39916094 + AluSx SINE Alu 1 298 -14 200 222 32 16 chr1 202748259 202748285 -39916068 + (CA)n Simple_repeat Simple_repeat 40 64 0 25 0 0 0 chr1 202749918 202749943 -39914410 + AT_rich Low_complexity Low_complexity 1 25 0 1732 151 0 0 chr1 202750475 202750714 -39913639 + AluSq SINE Alu 6 244 -69 2305 87 3 0 chr1 202752455 202752755 -39911598 + AluSp SINE Alu 1 301 -12 319 255 35 85 chr1 202753561 202753702 -39910651 + MIR SINE MIR 17 150 -112 2238 94 0 3 chr1 202754259 202754557 -39909796 - AluSx SINE Alu -15 297 1 181 282 111 34 chr1 202754670 202754787 -39909566 + MIR SINE MIR 131 256 -6 22 0 0 0 chr1 202755809 202755831 -39908522 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 202755961 202755983 -39908370 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1941 157 3 13 chr1 202756247 202756560 -39907793 - AluSx SINE Alu 0 312 3 22 35 0 0 chr1 202757036 202757065 -39907288 + AT_rich Low_complexity Low_complexity 1 29 0 491 275 87 9 chr1 202757918 202758136 -39906217 - HAL1 LINE L1 0 2507 2273 464 234 74 86 chr1 202758274 202758409 -39905944 - HAL1 LINE L1 -881 1626 1491 2244 108 0 0 chr1 202758409 202758704 -39905649 + AluSg SINE Alu 1 295 -15 464 234 74 86 chr1 202758704 202758893 -39905460 - HAL1 LINE L1 -1016 1491 1306 255 361 96 52 chr1 202758973 202759568 -39904785 - L2 LINE L2 -975 2339 1719 2488 65 7 7 chr1 202759958 202760268 -39904085 + AluY SINE Alu 1 310 -1 211 249 48 104 chr1 202761420 202761549 -39902804 - MIR SINE MIR -63 145 43 3389 53 12 0 chr1 202762230 202762662 -39901691 + L1PA7 LINE L1 5718 6154 0 2134 100 3 39 chr1 202763381 202763690 -39900663 - AluSx SINE Alu -14 298 1 692 258 84 57 chr1 202763732 202764256 -39900097 - L1MEd LINE L1 -2828 3301 2783 414 192 0 0 chr1 202764358 202764436 -39899917 + HsTC2 DNA Tc2 24 101 -1797 249 279 35 12 chr1 202764452 202764538 -39899815 - L1MEd LINE L1 -5488 631 544 180 0 0 0 chr1 202764550 202764570 -39899783 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 202764842 202764863 -39899490 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 202764893 202764918 -39899435 + AT_rich Low_complexity Low_complexity 1 25 0 589 279 135 39 chr1 202764949 202765320 -39899033 - L1M4 LINE L1 -3595 2551 2140 2404 72 10 0 chr1 202765320 202765613 -39898740 - AluSg SINE Alu -14 296 1 589 279 135 39 chr1 202765613 202765625 -39898728 - L1M4 LINE L1 -4006 2140 2131 750 316 128 23 chr1 202765645 202765943 -39898410 - L1M4 LINE L1 -3263 2883 2618 2436 86 0 3 chr1 202765943 202766257 -39898096 + AluSq SINE Alu 1 313 0 750 316 128 23 chr1 202766257 202766530 -39897823 - L1M4 LINE L1 -3528 2618 2252 1077 293 31 5 chr1 202766612 202766998 -39897355 - HERV16 LTR ERVL -2927 2069 1674 460 334 43 7 chr1 202767040 202767467 -39896886 - HERV16 LTR ERVL -3440 1556 1097 980 301 128 5 chr1 202767972 202768364 -39895989 - LTR16B LTR ERVL -2 462 23 582 181 55 60 chr1 202768558 202768740 -39895613 - L1M4 LINE L1 -1133 5013 4833 2472 213 39 19 chr1 202769172 202769872 -39894481 - L1M4 LINE L1 -1293 4853 4140 564 296 111 32 chr1 202772029 202772324 -39892029 - L2 LINE L2 -2 3311 2984 279 0 0 0 chr1 202772324 202772355 -39891998 + (GA)n Simple_repeat Simple_repeat 1 31 0 564 296 111 32 chr1 202772355 202772403 -39891950 - L2 LINE L2 -329 2984 2941 2407 212 57 92 chr1 202773632 202773850 -39890503 - L1MC5 LINE L1 -44 7917 7693 2141 120 0 13 chr1 202773850 202774159 -39890194 - AluSx SINE Alu -7 305 1 2407 212 57 92 chr1 202774159 202774291 -39890062 - L1MC5 LINE L1 -268 7693 7558 189 0 0 0 chr1 202774291 202774312 -39890041 + (TA)n Simple_repeat Simple_repeat 1 21 0 2486 65 3 0 chr1 202774314 202774624 -39889729 - AluY SINE Alu 0 311 1 2407 212 57 92 chr1 202774624 202775353 -39889000 - L1MC5 LINE L1 -404 7557 6881 1638 198 17 7 chr1 202775353 202775646 -39888707 - AluJo SINE Alu -16 296 1 2407 212 57 92 chr1 202775646 202775794 -39888559 - L1MC5 LINE L1 -1080 6881 6729 985 152 35 0 chr1 202775795 202775992 -39888361 - L1MA8 LINE L1 -69 6222 6019 241 266 0 25 chr1 202776504 202776583 -39887770 + CT-rich Low_complexity Low_complexity 3 79 0 234 160 0 20 chr1 202776585 202776635 -39887718 - L1ME3 LINE L1 -4 6158 6110 1325 239 44 73 chr1 202776698 202776994 -39887359 - L1ME3 LINE L1 -166 5998 5726 2361 87 0 3 chr1 202776994 202777305 -39887048 - AluY SINE Alu -1 310 1 1325 239 44 73 chr1 202777305 202777582 -39886771 - L1ME3 LINE L1 -438 5726 5442 1240 233 128 42 chr1 202777581 202778157 -39886196 - L1ME3 LINE L1 -958 5188 4563 * 1824 250 82 7 chr1 202778286 202779129 -39885224 - L1ME3 LINE L1 -2957 3189 2284 2264 70 3 36 chr1 202780375 202780676 -39883677 - AluY SINE Alu 0 311 21 246 307 175 9 chr1 202781032 202781146 -39883207 - MIR SINE MIR -71 191 59 208 136 51 34 chr1 202781325 202781384 -39882969 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 289 350 77 21 chr1 202781461 202781604 -39882749 - MIR SINE MIR -109 153 3 1263 119 0 0 chr1 202782348 202782516 -39881837 + AluSg/x SINE Alu 129 296 -16 221 250 0 0 chr1 202782594 202782646 -39881707 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 2384 62 0 29 chr1 202783118 202783427 -39880926 - AluY SINE Alu -11 300 1 2169 127 7 0 chr1 202784816 202785124 -39879229 + AluSx SINE Alu 1 310 -2 453 242 89 45 chr1 202786645 202786802 -39877551 - MER45A DNA AcHobo -2 176 13 2345 91 0 0 chr1 202786820 202787118 -39877235 - AluSc SINE Alu -11 298 1 192 40 0 0 chr1 202787763 202787788 -39876565 + (GA)n Simple_repeat Simple_repeat 2 26 0 409 357 41 12 chr1 202788662 202788833 -39875520 + MIR SINE MIR 49 224 -38 2097 87 0 96 chr1 202789267 202789589 -39874764 + AluSg SINE Alu 1 291 -19 579 315 42 68 chr1 202791070 202791769 -39872584 - L2 LINE L2 -85 3228 2504 906 185 22 12 chr1 202793197 202793428 -39870925 + L1MB7 LINE L1 5323 5555 -616 392 55 18 0 chr1 202793428 202793483 -39870870 + MADE1 DNA Mariner 25 80 0 449 233 36 72 chr1 202793495 202793718 -39870635 + L1MB7 LINE L1 5960 6174 -10 1831 159 0 17 chr1 202794359 202794654 -39869699 + AluJb SINE Alu 1 290 -22 1704 176 3 3 chr1 202794686 202794982 -39869371 + AluJb SINE Alu 1 296 -16 1002 159 115 51 chr1 202795598 202795894 -39868459 - L1MA9 LINE L1 -1 6311 5997 201 178 0 22 chr1 202796178 202796223 -39868130 + (CATTT)n Simple_repeat Simple_repeat 3 46 0 2055 118 24 0 chr1 202796911 202797198 -39867155 + AluSg SINE Alu 1 294 -16 2006 102 0 0 chr1 202797773 202798038 -39866315 + AluY SINE Alu 39 303 -8 362 300 108 45 chr1 202798779 202799002 -39865351 + MIR SINE MIR 20 256 -6 276 365 51 6 chr1 202799151 202799329 -39865024 + MIR SINE MIR 56 241 -21 2828 13 0 0 chr1 202799533 202799845 -39864508 + AluYb8 SINE Alu 1 312 -6 1966 164 0 0 chr1 202800085 202800383 -39863970 + AluSx SINE Alu 1 298 -14 589 165 0 71 chr1 202801097 202801224 -39863129 + AluJo SINE Alu 47 164 -148 856 176 0 0 chr1 202801385 202801510 -39862843 + AluJo SINE Alu 166 290 -22 2014 117 11 0 chr1 202801518 202801829 -39862524 + AluSx SINE Alu 1 314 0 650 242 91 82 chr1 202802008 202802276 -39862077 + MER46C DNA MER2_type 1 274 -64 2331 96 3 0 chr1 202802276 202802579 -39861774 - AluSp SINE Alu -8 305 2 650 242 91 82 chr1 202802579 202802641 -39861712 + MER46C DNA MER2_type 274 334 -4 303 333 38 38 chr1 202802657 202802867 -39861486 - L3 LINE CR1 -231 1346 1137 916 280 178 5 chr1 202803257 202803668 -39860685 - L2 LINE L2 -28 3285 2804 630 260 88 61 chr1 202803657 202804053 -39860300 - L2 LINE L2 -1277 2037 1631 * 2367 107 3 0 chr1 202805262 202805571 -39858782 + AluSg SINE Alu 1 310 0 1724 160 53 0 chr1 202806134 202806416 -39857937 + AluSx SINE Alu 1 297 -15 202 267 40 0 chr1 202806434 202806535 -39857818 + (TA)n Simple_repeat Simple_repeat 1 105 0 747 238 55 11 chr1 202806653 202806834 -39857519 + MER5A DNA MER1_type 1 189 0 548 309 34 53 chr1 202806983 202807245 -39857108 + MIR SINE MIR 6 262 0 200 264 139 0 chr1 202807248 202807320 -39857033 - L2 LINE L2 -37 3276 3195 201 344 0 0 chr1 202807371 202807435 -39856918 - L3 LINE CR1 -12 1565 1502 284 287 157 17 chr1 202807509 202807624 -39856729 + MIR SINE MIR 20 150 -58 388 301 82 14 chr1 202807909 202808055 -39856298 - L3 LINE CR1 -1022 555 400 242 337 84 80 chr1 202808448 202808887 -39855466 - L2 LINE L2 0 3272 2832 185 334 103 77 chr1 202809274 202809543 -39854810 - L2 LINE L2 -1038 2276 1993 2004 137 3 7 chr1 202809543 202809842 -39854511 + AluSx SINE Alu 1 298 -14 185 334 103 77 chr1 202809842 202809949 -39854404 - L2 LINE L2 -1321 1993 1890 516 16 0 0 chr1 202811153 202811214 -39853139 + (TG)n Simple_repeat Simple_repeat 2 62 0 24 32 0 0 chr1 202812238 202812269 -39852084 + AT_rich Low_complexity Low_complexity 1 31 0 2272 87 24 0 chr1 202813100 202813388 -39850965 - AluSg SINE Alu -15 295 1 242 191 0 0 chr1 202814048 202814090 -39850263 + C-rich Low_complexity Low_complexity 1 42 0 384 234 0 0 chr1 202814190 202814284 -39850069 + (CA)n Simple_repeat Simple_repeat 1 94 0 247 233 0 0 chr1 202814245 202814305 -39850048 - L1MC4 LINE L1 -1339 6703 6644 * 254 321 37 0 chr1 202815195 202815276 -39849077 + MER5A DNA MER1_type 83 166 -23 21 0 0 0 chr1 202816782 202816803 -39847550 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 202816829 202816857 -39847496 + AT_rich Low_complexity Low_complexity 1 28 0 2266 76 3 51 chr1 202817312 202817627 -39846726 - AluY SINE Alu -11 300 1 279 146 36 18 chr1 202817675 202817730 -39846623 - AluJo SINE Alu -20 282 227 1034 126 0 18 chr1 202817730 202817897 -39846456 - AluJo SINE Alu -148 164 1 2199 114 3 3 chr1 202818616 202818914 -39845439 + AluSc SINE Alu 1 298 -11 202 356 75 37 chr1 202821568 202821756 -39842597 + L2 LINE L2 2239 2433 -881 2128 116 14 0 chr1 202823137 202823429 -39840924 + AluSg SINE Alu 1 296 -14 371 269 67 75 chr1 202823445 202823867 -39840486 + L1MEd LINE L1 926 1350 -4779 2218 116 0 0 chr1 202823867 202824170 -39840183 + AluSx SINE Alu 1 303 -9 371 269 67 75 chr1 202824170 202824270 -39840083 + L1MEd LINE L1 1350 1432 -4697 2537 45 0 0 chr1 202824270 202824562 -39839791 + AluY SINE Alu 1 292 -19 371 269 67 75 chr1 202824562 202824662 -39839691 + L1MEd LINE L1 1432 1531 -4598 360 229 65 122 chr1 202824949 202825113 -39839240 - L2 LINE L2 -1 3312 3161 342 254 136 8 chr1 202825113 202825231 -39839122 + MER94 DNA DNA 2 134 0 360 229 65 122 chr1 202825231 202825280 -39839073 - L2 LINE L2 -152 3161 3111 249 33 0 0 chr1 202825291 202825321 -39839032 + (A)n Simple_repeat Simple_repeat 1 30 0 1483 183 28 17 chr1 202825322 202825611 -39838742 + AluJo SINE Alu 1 292 -20 2230 101 0 22 chr1 202827033 202827350 -39837003 + AluSg SINE Alu 1 310 0 414 298 113 25 chr1 202827356 202827718 -39836635 + L1M4 LINE L1 4060 4453 -1693 25 0 0 0 chr1 202827778 202827803 -39836550 + AT_rich Low_complexity Low_complexity 1 25 0 2504 80 0 0 chr1 202828080 202828392 -39835961 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 202828735 202828756 -39835597 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr1 202829497 202829521 -39834832 + (A)n Simple_repeat Simple_repeat 1 24 0 2278 98 10 0 chr1 202830273 202830569 -39833784 - AluSp SINE Alu -11 302 4 1254 96 15 30 chr1 202830578 202830775 -39833578 - L1MA5A LINE L1 -4 6293 6100 1625 150 41 4 chr1 202830863 202831129 -39833224 + AluJb SINE Alu 24 299 -13 467 136 0 25 chr1 202831174 202831255 -39833098 + AluJ/FRAM SINE Alu 227 305 -7 489 308 99 20 chr1 202831957 202832210 -39832143 + LTR16A LTR ERVL 152 424 -26 275 261 43 0 chr1 202832332 202832401 -39831952 + HERV16 LTR ERVL 147 218 -4778 2126 213 48 70 chr1 202832403 202833013 -39831340 + LTR9 LTR ERV1 1 596 -16 265 325 31 37 chr1 202833072 202833235 -39831118 + HERV16 LTR ERVL 261 422 -4574 884 308 66 46 chr1 202833484 202834029 -39830324 + HERV16 LTR ERVL 887 1442 -3554 1710 288 80 35 chr1 202834091 202834879 -39829474 + HERV16 LTR ERVL 1585 2407 -2589 395 287 13 47 chr1 202835112 202835262 -39829091 + HERV16 LTR ERVL 2694 2838 -2158 300 229 121 24 chr1 202835263 202835346 -39829007 + L1MDa LINE L1 13 103 -6437 617 249 97 16 chr1 202835465 202835650 -39828703 + L1MDa LINE L1 98 297 -6243 499 45 15 0 chr1 202835782 202835848 -39828505 + MER41B LTR ERV1 481 547 -88 27 49 0 0 chr1 202839112 202839153 -39825200 + GC_rich Low_complexity Low_complexity 1 41 0 1588 134 50 18 chr1 202839748 202840031 -39824322 - AluJo SINE Alu -15 297 6 659 203 29 138 chr1 202840316 202840592 -39823761 - MIR SINE MIR -2 260 15 2274 61 0 7 chr1 202840853 202841132 -39823221 + AluY SINE Alu 30 306 -5 621 276 124 18 chr1 202841696 202841913 -39822440 - MIR SINE MIR -2 260 21 226 333 0 0 chr1 202842036 202842105 -39822248 - L2 LINE L2 0 3313 3245 2249 95 23 3 chr1 202842133 202842439 -39821914 - AluSx SINE Alu 0 312 1 944 264 113 54 chr1 202842439 202842937 -39821416 + L2 LINE L2 2773 3299 -14 2241 85 0 36 chr1 202842937 202843243 -39821110 + AluSq SINE Alu 1 295 -18 944 264 113 54 chr1 202843243 202843254 -39821099 + L2 LINE L2 3299 3308 -5 198 286 39 26 chr1 202843360 202843437 -39820916 + MER5A DNA MER1_type 5 82 -107 21 57 0 0 chr1 202843448 202843483 -39820870 + AT_rich Low_complexity Low_complexity 1 35 0 518 72 0 0 chr1 202843483 202843552 -39820801 - L1MA3 LINE L1 0 6305 6237 265 260 62 31 chr1 202843552 202843648 -39820705 - MER5A DNA MER1_type -75 114 16 926 197 67 29 chr1 202845944 202846152 -39818201 + MER58A DNA MER1_type 9 224 0 2208 99 0 23 chr1 202846512 202846814 -39817539 - AluY SINE Alu -16 295 1 746 340 76 4 chr1 202846820 202847306 -39817047 - L1ME3A LINE L1 -240 5930 5410 1086 274 131 14 chr1 202848938 202849442 -39814911 + MLT1L LTR MaLR 6 568 -47 357 352 79 32 chr1 202849521 202849774 -39814579 + L2 LINE L2 2551 2815 -499 220 244 199 38 chr1 202850053 202850184 -39814169 + L2 LINE L2 3121 3272 0 939 253 65 42 chr1 202850549 202850857 -39813496 + Charlie2 DNA MER1_type 4 318 -2544 1104 187 87 141 chr1 202850868 202851134 -39813219 + Charlie2 DNA MER1_type 1859 2138 -724 2743 113 59 7 chr1 202851134 202851541 -39812812 + MSTA LTR MaLR 1 428 0 1104 187 87 141 chr1 202851541 202852283 -39812070 + Charlie2 DNA MER1_type 2138 2813 -49 462 149 0 0 chr1 202853456 202853543 -39810810 + (TCCC)n Simple_repeat Simple_repeat 2 88 0 2060 110 0 7 chr1 202853571 202853843 -39810510 - AluSq SINE Alu -43 270 1 565 226 0 16 chr1 202854345 202854469 -39809884 + L2 LINE L2 3191 3312 -1 202 108 81 0 chr1 202854625 202854662 -39809691 - L2 LINE L2 -3 3310 3271 361 264 108 31 chr1 202854963 202855092 -39809261 - MER5A DNA MER1_type -1 188 50 2488 75 3 0 chr1 202855571 202855876 -39808477 - AluSp SINE Alu -5 308 3 414 234 55 31 chr1 202856126 202856254 -39808099 + L3 LINE CR1 1240 1370 -207 2639 32 0 3 chr1 202856298 202856609 -39807744 + AluY SINE Alu 1 310 -1 1256 166 20 32 chr1 202856617 202856864 -39807489 + L1MB5 LINE L1 5931 6174 0 281 249 65 8 chr1 202857204 202857374 -39806979 - L1ME LINE L1 -299 5822 5628 985 192 126 96 chr1 202857424 202857678 -39806675 - MER2 DNA MER2_type -1 343 75 2167 93 0 30 chr1 202857678 202857980 -39806373 + AluSq SINE Alu 1 293 -20 985 192 126 96 chr1 202857980 202858058 -39806295 - MER2 DNA MER2_type -269 75 1 22 56 0 0 chr1 202858547 202858583 -39805770 + AT_rich Low_complexity Low_complexity 1 36 0 819 312 146 31 chr1 202859121 202859504 -39804849 - L2 LINE L2 -2 3311 2973 2343 91 0 7 chr1 202859504 202859812 -39804541 + AluSc SINE Alu 1 306 -3 819 312 146 31 chr1 202859812 202860173 -39804180 - L2 LINE L2 -340 2973 2655 2174 124 0 3 chr1 202860173 202860479 -39803874 + AluSq SINE Alu 1 305 -8 819 312 146 31 chr1 202860479 202860806 -39803547 - L2 LINE L2 -658 2655 2108 1394 154 0 131 chr1 202860826 202861200 -39803153 + AluJb SINE Alu 1 312 0 488 56 14 0 chr1 202862550 202862622 -39801731 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2126 99 53 0 chr1 202862678 202862961 -39801392 + AluSg SINE Alu 1 298 -12 218 32 32 0 chr1 202863376 202863407 -39800946 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1052 90 0 0 chr1 202863409 202863543 -39800810 - AluSg/x SINE Alu -30 282 149 365 278 56 19 chr1 202864096 202864204 -39800149 + L2 LINE L2 3155 3266 -6 2253 118 0 0 chr1 202864238 202864535 -39799818 + AluSx SINE Alu 3 299 -13 283 304 39 0 chr1 202864556 202864658 -39799695 - MARNA DNA Mariner -356 230 125 665 323 92 7 chr1 202864752 202865055 -39799298 + MLT1I LTR MaLR 80 408 -1 2224 84 0 3 chr1 202866350 202866662 -39797691 - AluSq SINE Alu 0 311 1 2198 106 0 0 chr1 202866668 202867003 -39797350 - AluSq SINE Alu 0 335 1 214 182 0 0 chr1 202867015 202867059 -39797294 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1689 244 56 18 chr1 202867574 202868024 -39796329 - MLT1C LTR MaLR 0 467 1 227 54 27 0 chr1 202868704 202868741 -39795612 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2174 110 0 13 chr1 202868777 202869076 -39795277 - AluSx SINE Alu -17 295 1 1965 142 7 0 chr1 202869153 202869481 -39794872 + AluSq SINE Alu 1 313 0 192 326 45 34 chr1 202869483 202869572 -39794781 + MER5A DNA MER1_type 67 156 -33 292 241 37 37 chr1 202870030 202870138 -39794215 + MIR SINE MIR 85 192 -70 872 153 0 23 chr1 202870759 202870890 -39793463 + FLAM_C SINE Alu 1 128 -5 1621 191 7 0 chr1 202871245 202871523 -39792830 - AluJo SINE Alu -32 280 1 513 251 173 52 chr1 202871589 202871619 -39792734 + MIR SINE MIR 4 29 -233 2072 131 3 3 chr1 202871619 202871917 -39792436 + AluSx SINE Alu 1 298 -14 513 251 173 52 chr1 202871917 202872117 -39792236 + MIR SINE MIR 29 262 0 864 188 74 0 chr1 202872603 202872779 -39791574 - MER5A DNA MER1_type 0 189 1 2083 114 3 7 chr1 202872806 202873103 -39791250 + AluSc SINE Alu 1 296 -13 2177 122 0 3 chr1 202873164 202873467 -39790886 + AluSq SINE Alu 1 302 -11 2390 75 0 7 chr1 202874360 202874654 -39789699 - AluSc SINE Alu -17 292 1 411 218 0 0 chr1 202874789 202874867 -39789486 - MER2 DNA MER2_type 0 345 268 293 100 0 0 chr1 202874915 202874955 -39789398 + AluJ SINE Alu 87 126 -176 2285 119 0 0 chr1 202874965 202875277 -39789076 + AluSx SINE Alu 1 312 0 1015 170 0 37 chr1 202875292 202875480 -39788873 + AluJ SINE Alu 120 300 -12 1133 182 10 0 chr1 202875481 202875684 -39788669 - MER2 DNA MER2_type -138 207 3 244 222 25 62 chr1 202875951 202876032 -39788321 - MER96 DNA MER1_type? 0 175 98 2331 107 0 0 chr1 202876200 202876509 -39787844 + AluSx SINE Alu 1 309 -3 350 245 161 48 chr1 202877878 202878053 -39786300 - L1ME4a LINE L1 -47 6074 5856 1845 174 0 29 chr1 202878053 202878369 -39785984 - AluJb SINE Alu 0 312 6 350 245 161 48 chr1 202878369 202878466 -39785887 - L1ME4a LINE L1 -265 5856 5771 1119 279 34 64 chr1 202878637 202879139 -39785214 + LTR16C LTR ERVL 5 491 0 205 245 57 0 chr1 202879366 202879419 -39784934 - MIR SINE MIR -114 94 39 1448 188 3 41 chr1 202879579 202879872 -39784481 + AluJb SINE Alu 1 282 -30 2394 93 3 0 chr1 202879903 202880214 -39784139 + AluSp SINE Alu 1 312 -1 201 284 134 35 chr1 202880554 202880808 -39783545 - L2 LINE L2 -179 3093 2815 2122 135 6 3 chr1 202881166 202881478 -39782875 - AluSq SINE Alu 0 313 1 2289 95 13 0 chr1 202881523 202881829 -39782524 - AluSg SINE Alu 0 310 1 341 362 53 20 chr1 202881855 202882101 -39782252 + L2 LINE L2 3014 3267 -5 2141 85 0 41 chr1 202883601 202883929 -39780424 + AluSq SINE Alu 1 316 0 220 261 0 0 chr1 202883940 202883986 -39780367 + L2 LINE L2 3006 3051 -221 356 298 38 60 chr1 202884099 202884364 -39779989 + MIR SINE MIR 2 260 -2 274 299 65 9 chr1 202884594 202884701 -39779652 - MER94 DNA DNA -21 113 1 1909 156 0 16 chr1 202884702 202885009 -39779344 - AluJo SINE Alu -10 302 1 252 130 0 0 chr1 202885444 202885490 -39778863 + (TA)n Simple_repeat Simple_repeat 2 47 0 1327 189 175 3 chr1 202885491 202885788 -39778565 - MER7A DNA MER2_type 0 346 1 1330 102 0 2 chr1 202885855 202886090 -39778263 + AluSc SINE Alu 2 288 -21 228 313 81 10 chr1 202886493 202886592 -39777761 + MIR SINE MIR 129 234 -28 183 287 139 9 chr1 202886682 202886790 -39777563 + MIR SINE MIR 132 253 -9 509 129 14 0 chr1 202887165 202887235 -39777118 + AluS SINE Alu 2 72 -240 279 133 0 0 chr1 202888008 202888053 -39776300 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 2076 138 3 0 chr1 202888078 202888375 -39775978 + AluSx SINE Alu 1 298 -14 202 391 43 7 chr1 202889179 202889317 -39775036 + MIR3 SINE MIR 3 145 -63 2352 109 0 0 chr1 202889721 202890032 -39774321 - AluSq SINE Alu -2 311 1 373 283 40 58 chr1 202890752 202890874 -39773479 + MIR SINE MIR 80 200 -62 2314 85 0 19 chr1 202890874 202891181 -39773172 + AluSx SINE Alu 1 301 -11 373 283 40 58 chr1 202891181 202891231 -39773122 + MIR SINE MIR 200 249 -13 21 0 0 0 chr1 202891616 202891637 -39772716 + AT_rich Low_complexity Low_complexity 1 21 0 1978 87 11 0 chr1 202891806 202892070 -39772283 + AluSc SINE Alu 21 287 -22 2189 40 4 40 chr1 202892071 202892346 -39772007 + AluY SINE Alu 31 295 -16 217 151 75 0 chr1 202892718 202892771 -39771582 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 203 286 57 0 chr1 202892775 202892845 -39771508 - L3 LINE CR1 -125 1452 1379 421 240 78 0 chr1 202892875 202893004 -39771349 - Charlie4a DNA MER1_type -2 506 368 248 170 85 11 chr1 202893004 202893098 -39771255 + (TA)n Simple_repeat Simple_repeat 1 101 0 2224 198 7 28 chr1 202893103 202893538 -39770815 - MSTB LTR MaLR 0 426 1 267 31 0 0 chr1 202893555 202893587 -39770766 + (TG)n Simple_repeat Simple_repeat 2 33 0 985 241 46 40 chr1 202893590 202893913 -39770440 - Charlie4a DNA MER1_type -163 345 21 761 185 0 8 chr1 202893925 202894055 -39770298 + AluJo SINE Alu 2 130 -182 3496 43 21 1 chr1 202894055 202894556 -39769797 + LTR10C LTR ERV1 14 591 0 806 204 0 51 chr1 202894579 202894759 -39769594 + AluJo SINE Alu 137 308 0 22 0 0 0 chr1 202895065 202895087 -39769266 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 202895149 202895170 -39769183 + AT_rich Low_complexity Low_complexity 1 21 0 223 321 92 15 chr1 202895747 202895878 -39768475 + L2 LINE L2 3172 3312 -1 2458 76 3 0 chr1 202895924 202896227 -39768126 - AluSq SINE Alu -9 304 1 306 234 106 0 chr1 202896275 202896369 -39767984 + MIR SINE MIR 111 214 -48 184 281 178 14 chr1 202896421 202896567 -39767786 - MIR3 SINE MIR -4 204 35 240 356 22 0 chr1 202897407 202897497 -39766856 + MIR SINE MIR 163 254 -8 210 118 0 0 chr1 202901164 202901198 -39763155 + (TCTCCC)n Simple_repeat Simple_repeat 6 39 0 306 0 0 0 chr1 202901830 202901864 -39762489 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 255 109 0 chr1 202903011 202903103 -39761250 - MIR SINE MIR -66 142 59 358 369 110 0 chr1 202903761 202903997 -39760356 + L3 LINE CR1 1036 1297 -280 180 330 106 64 chr1 202904209 202904445 -39759908 + L3 LINE CR1 1331 1576 -1 2114 134 3 0 chr1 202904733 202905024 -39759329 - AluSx SINE Alu -15 297 6 2474 56 0 10 chr1 202905477 202905782 -39758571 + AluY SINE Alu 5 306 -5 22 0 0 0 chr1 202905991 202906013 -39758340 + AT_rich Low_complexity Low_complexity 1 22 0 1898 153 3 28 chr1 202906016 202906336 -39758017 + AluJb SINE Alu 1 312 0 1060 132 19 6 chr1 202907286 202907445 -39756908 - AluSp SINE Alu -18 295 135 1091 162 5 35 chr1 202907479 202907676 -39756677 - MER20 DNA MER1_type 0 219 29 730 305 16 70 chr1 202907677 202907833 -39756520 - L1MC4a LINE L1 -1932 5876 5713 216 0 0 0 chr1 202907833 202907857 -39756496 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 730 305 16 70 chr1 202907857 202908070 -39756283 - L1MC4a LINE L1 -2095 5713 5527 1552 189 14 17 chr1 202908208 202908499 -39755854 - AluJo SINE Alu -22 290 1 204 276 52 60 chr1 202909095 202909211 -39755142 + MIR SINE MIR 17 131 -77 2185 187 24 99 chr1 202909613 202909708 -39754645 - MLT1D LTR MaLR 0 505 404 1805 126 0 8 chr1 202909708 202909963 -39754390 - AluSx SINE Alu -57 255 3 2185 187 24 99 chr1 202909963 202910412 -39753941 - MLT1D LTR MaLR -101 404 2 1352 165 7 68 chr1 202911804 202912083 -39752270 + AluJo SINE Alu 29 290 -22 1096 67 6 28 chr1 202912113 202912293 -39752060 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 443 272 43 72 chr1 202912330 202912368 -39751985 - MER57B LTR ERV1 -164 270 232 2271 109 0 3 chr1 202912368 202912672 -39751681 + AluSx SINE Alu 1 303 -9 443 272 43 72 chr1 202912672 202912868 -39751485 - MER57B LTR ERV1 -202 232 43 1102 187 91 14 chr1 202912910 202913129 -39751224 - MER46A DNA MER2_type 0 236 1 370 275 132 5 chr1 202913164 202913353 -39751000 - L1ME4a LINE L1 -199 5922 5710 1394 207 13 46 chr1 202913412 202913740 -39750613 + AluJo SINE Alu 1 318 0 2183 133 0 0 chr1 202913881 202914190 -39750163 + AluSx SINE Alu 1 309 -3 198 0 0 0 chr1 202914247 202914269 -39750084 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 371 312 41 54 chr1 202914482 202914851 -39749502 + Tigger8 DNA MER2_type 210 573 -93 216 352 132 25 chr1 202914868 202915027 -39749326 + MER5A DNA MER1_type 14 189 0 1826 157 14 0 chr1 202915646 202915933 -39748420 - AluJo SINE Alu -21 291 1 390 260 147 40 chr1 202915934 202916207 -39748146 - L1ME4a LINE L1 -861 5285 4984 644 99 11 0 chr1 202916373 202916464 -39747889 - AluSg1 SINE Alu -216 93 2 2335 111 3 0 chr1 202916721 202917028 -39747325 + AluSg SINE Alu 2 309 -1 2412 101 3 0 chr1 202917663 202917971 -39746382 - AluSg SINE Alu -1 309 1 2264 95 0 0 chr1 202918538 202918834 -39745519 + AluSg SINE Alu 1 296 -14 255 303 17 25 chr1 202918965 202919084 -39745269 + L2 LINE L2 2864 2981 -291 2282 57 0 7 chr1 202919328 202919644 -39744709 - AluY SINE Alu 0 314 1 189 267 80 53 chr1 202919652 202919727 -39744626 + L2 LINE L2 3188 3264 -8 1668 169 18 7 chr1 202919809 202920093 -39744260 - AluJo SINE Alu -21 291 5 2239 67 0 60 chr1 202920105 202920420 -39743933 - AluSq SINE Alu -17 296 1 3486 146 40 44 chr1 202921015 202921832 -39742521 - L1MA4 LINE L1 -18 6138 5316 4376 100 11 17 chr1 202921856 202922478 -39741875 - L1PB2 LINE L1 -2 6149 5530 2403 87 6 3 chr1 202922478 202922790 -39741563 - AluSq SINE Alu 0 313 1 4376 100 11 17 chr1 202922790 202922829 -39741524 - L1PB2 LINE L1 -621 5530 5492 2315 116 0 3 chr1 202923155 202923466 -39740887 - AluSq SINE Alu -3 310 1 22 56 0 0 chr1 202924898 202924934 -39739419 + AT_rich Low_complexity Low_complexity 1 36 0 238 229 43 57 chr1 202925234 202925304 -39739049 + MIR SINE MIR 30 98 -110 1336 85 11 0 chr1 202926935 202927112 -39737241 - AluSq SINE Alu 0 313 135 267 285 49 90 chr1 202927224 202927306 -39737047 + MIR3 SINE MIR 70 154 -54 216 0 0 0 chr1 202927306 202927330 -39737023 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2213 76 0 28 chr1 202927332 202927621 -39736732 - AluSx SINE Alu -31 281 1 267 285 49 90 chr1 202927621 202927679 -39736674 + MIR3 SINE MIR 155 207 -1 195 348 179 5 chr1 202927815 202927874 -39736479 - MIR SINE MIR -11 251 204 426 20 0 0 chr1 202927874 202927925 -39736428 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 195 348 179 5 chr1 202927925 202927951 -39736402 - MIR SINE MIR -58 204 184 192 77 0 0 chr1 202927951 202927977 -39736376 + (CACCAT)n Simple_repeat Simple_repeat 5 30 0 195 348 179 5 chr1 202927977 202928091 -39736262 - MIR SINE MIR -78 184 16 314 317 47 105 chr1 202928194 202928623 -39735730 - L2 LINE L2 0 3272 2869 793 172 0 0 chr1 202930194 202930322 -39734031 - FLAM_A SINE Alu -1 132 5 660 238 19 68 chr1 202930963 202931169 -39733184 + MIR SINE MIR 23 218 -44 384 247 0 0 chr1 202931423 202931508 -39732845 + MER45A DNA AcHobo 93 177 -1 241 318 84 9 chr1 202932391 202932498 -39731855 - L2 LINE L2 -995 2319 2205 286 272 83 88 chr1 202932513 202932730 -39731623 - MIR SINE MIR 0 262 47 254 383 59 42 chr1 202932808 202932901 -39731452 - L2 LINE L2 -1133 2181 2091 2229 135 3 0 chr1 202932901 202933212 -39731141 + AluSx SINE Alu 1 312 0 254 383 59 42 chr1 202933212 202933894 -39730459 - L2 LINE L2 -1223 2091 1393 2120 80 25 7 chr1 202934893 202935192 -39729161 + AluSc SINE Alu 1 304 0 1737 153 6 61 chr1 202935788 202936115 -39728238 + AluJb SINE Alu 1 309 -3 2297 105 0 0 chr1 202937933 202938229 -39726124 - AluSc SINE Alu -13 296 1 931 234 29 0 chr1 202939369 202939578 -39724775 + MER20 DNA MER1_type 2 216 -3 1990 87 3 50 chr1 202939686 202940011 -39724342 + AluSx SINE Alu 1 311 0 320 392 74 14 chr1 202940365 202940582 -39723771 + L2 LINE L2 2995 3224 -48 2198 143 22 6 chr1 202940620 202940976 -39723377 - THE1B LTR MaLR -2 362 1 870 199 74 77 chr1 202941284 202941520 -39722833 - MER2 DNA MER2_type -5 340 104 2435 61 7 0 chr1 202941520 202941815 -39722538 - AluY SINE Alu -14 297 1 870 199 74 77 chr1 202941815 202941914 -39722439 - MER2 DNA MER2_type -241 104 6 3375 197 41 46 chr1 202942328 202943125 -39721228 + MER21B LTR ERV1 1 793 -70 2113 120 0 25 chr1 202943421 202943737 -39720616 + AluSx SINE Alu 1 308 -4 214 278 65 37 chr1 202943862 202943970 -39720383 + L2 LINE L2 3162 3272 0 2338 84 0 0 chr1 202944587 202944884 -39719469 + AluY SINE Alu 1 297 -14 303 85 0 0 chr1 202944889 202944936 -39719417 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2093 116 0 43 chr1 202945348 202945650 -39718703 + AluSx SINE Alu 1 289 -23 32 0 0 0 chr1 202945650 202945682 -39718671 + AT_rich Low_complexity Low_complexity 1 32 0 209 352 163 15 chr1 202946209 202946405 -39717948 - L2 LINE L2 -1259 2055 1831 2309 110 3 0 chr1 202946415 202946724 -39717629 + AluSp SINE Alu 1 310 -3 2326 88 3 3 chr1 202947376 202947682 -39716671 - AluSp SINE Alu -7 306 1 252 0 0 0 chr1 202947764 202947792 -39716561 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1971 124 58 0 chr1 202948698 202948989 -39715364 - AluSg SINE Alu -2 308 1 229 270 76 81 chr1 202949207 202949392 -39714961 - MIR3 SINE MIR -3 205 22 1401 185 34 51 chr1 202949658 202949950 -39714403 + AluJo SINE Alu 1 287 -25 181 246 53 18 chr1 202950048 202950105 -39714248 + MIR SINE MIR 95 153 -109 2279 97 0 0 chr1 202951488 202951787 -39712566 + AluSq SINE Alu 1 299 -14 2298 110 0 3 chr1 202952224 202952532 -39711821 + AluSq SINE Alu 5 311 -2 484 286 157 16 chr1 202952602 202952787 -39711566 + MIR SINE MIR 52 262 0 1837 258 114 76 chr1 202953596 202954249 -39710104 + HAL1 LINE L1 574 1200 -1307 2005 130 13 3 chr1 202954249 202954550 -39709803 + AluSx SINE Alu 3 306 -6 1837 258 114 76 chr1 202954550 202955651 -39708702 + HAL1 LINE L1 1200 2396 -111 23 68 0 0 chr1 202955805 202955849 -39708504 + AT_rich Low_complexity Low_complexity 1 44 0 2906 203 132 44 chr1 202956026 202956697 -39707656 - Charlie1 DNA MER1_type 0 2761 1966 2187 135 0 0 chr1 202956697 202957000 -39707353 - AluSx SINE Alu -9 303 1 2906 203 132 44 chr1 202957000 202957360 -39706993 - Charlie1 DNA MER1_type -795 1966 1639 611 178 0 28 chr1 202957369 202957476 -39706877 + FLAM_A SINE Alu 12 115 -27 813 213 28 19 chr1 202957488 202957699 -39706654 - Charlie1 DNA MER1_type -1109 1652 1440 225 260 110 63 chr1 202957763 202957890 -39706463 + L2 LINE L2 3180 3312 -1 303 28 0 0 chr1 202959046 202959082 -39705271 + (CA)n Simple_repeat Simple_repeat 1 36 0 278 338 150 24 chr1 202959108 202959315 -39705038 - MIR SINE MIR -10 252 20 710 206 3 6 chr1 202960064 202960382 -39703971 + (TG)n Simple_repeat Simple_repeat 1 317 0 825 172 0 0 chr1 202960540 202960720 -39703633 + (TG)n Simple_repeat Simple_repeat 1 180 0 1870 167 7 0 chr1 202961406 202961699 -39702654 + AluJb SINE Alu 1 295 -17 2137 133 0 13 chr1 202961702 202962018 -39702335 + AluJb SINE Alu 1 312 0 811 274 57 24 chr1 202962153 202962449 -39701904 + MER69 DNA AcHobo 85 390 -836 299 271 12 0 chr1 202962478 202962563 -39701790 + MER69 DNA AcHobo 2441 2526 0 2059 126 10 7 chr1 202963049 202963351 -39701002 + AluSx SINE Alu 7 309 -3 1291 244 55 70 chr1 202963679 202964154 -39700199 + L1MEc LINE L1 29 496 -5900 3487 254 64 12 chr1 202964155 202964299 -39700054 + L1MEc LINE L1 682 817 -5579 228 100 0 0 chr1 202964299 202964339 -39700014 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3487 254 64 12 chr1 202964339 202965305 -39699048 + L1MEc LINE L1 817 1927 -4469 2173 137 0 0 chr1 202965305 202965605 -39698748 + AluSx SINE Alu 1 300 -12 3487 254 64 12 chr1 202965605 202966146 -39698207 + L1MEc LINE L1 1927 2438 -3958 678 183 22 39 chr1 202966187 202966367 -39697986 + L1M4 LINE L1 4186 4362 -1784 984 195 0 26 chr1 202966367 202966562 -39697791 + AluJo SINE Alu 121 310 -2 2838 216 29 23 chr1 202966566 202967336 -39697017 + L1M4 LINE L1 4384 5157 -989 2247 102 7 0 chr1 202967664 202967957 -39696396 + AluSc SINE Alu 5 299 -10 192 283 0 38 chr1 202968777 202968830 -39695523 + MIR3 SINE MIR 124 174 -34 369 78 20 0 chr1 202968878 202968939 -39695414 + Alu SINE Alu 3 51 -252 2268 88 7 7 chr1 202969140 202969435 -39694918 + AluSq SINE Alu 1 295 -18 719 191 8 0 chr1 202969444 202969575 -39694778 + FLAM_C SINE Alu 1 132 -11 1598 138 24 63 chr1 202969584 202969837 -39694516 + MER33 DNA MER1_type 1 239 -2346 2177 129 3 0 chr1 202969837 202970139 -39694214 - AluSx SINE Alu -9 303 1 1598 138 24 63 chr1 202970139 202970219 -39694134 + MER33 DNA MER1_type 239 321 -3 249 313 20 13 chr1 202970612 202970762 -39693591 + L2 LINE L2 2933 3083 -189 195 313 157 0 chr1 202970869 202970984 -39693369 + L2 LINE L2 3180 3312 -1 202 281 50 44 chr1 202971661 202971821 -39692532 - L2 LINE L2 -1381 1933 1773 694 299 41 5 chr1 202971843 202971880 -39692473 + MIR SINE MIR 1 35 -227 2113 114 0 17 chr1 202971880 202972204 -39692149 - AluSq SINE Alu 0 313 1 694 299 41 5 chr1 202972204 202972387 -39691966 + MIR SINE MIR 35 229 -33 2229 150 25 6 chr1 202972525 202972886 -39691467 - MLT1B LTR MaLR 0 390 23 2240 122 0 0 chr1 202972922 202973226 -39691127 - AluSx SINE Alu -8 304 1 2197 93 14 0 chr1 202973385 202973689 -39690664 - AluSx SINE Alu 0 308 1 1147 152 43 0 chr1 202974353 202974537 -39689816 + THE1C LTR MaLR 1 192 -183 1114 149 53 43 chr1 202975092 202975300 -39689053 + THE1C LTR MaLR 155 364 0 556 280 36 30 chr1 202975339 202975567 -39688786 + MIR SINE MIR 34 261 -1 739 158 0 0 chr1 202975705 202975825 -39688528 + L1PA16 LINE L1 6027 6146 -20 1575 170 14 41 chr1 202975860 202976154 -39688199 - AluJo SINE Alu -24 288 3 1946 127 17 10 chr1 202976162 202976461 -39687892 - AluSx SINE Alu -11 301 1 524 217 11 149 chr1 202976979 202977133 -39687220 - MER112 DNA MER1_type -2 258 159 2152 121 7 0 chr1 202977133 202977423 -39686930 + AluSx SINE Alu 1 292 -20 524 217 11 149 chr1 202977423 202977549 -39686804 - MER112 DNA MER1_type -101 159 17 2070 202 9 56 chr1 202977939 202978473 -39685880 - MER74A LTR ERVL -28 530 22 477 133 0 0 chr1 202978473 202978548 -39685805 + FLAM SINE Alu 57 131 -12 2214 111 7 0 chr1 202978655 202978952 -39685401 + AluSp SINE Alu 1 299 -14 23 0 0 29 chr1 202979069 202979088 -39685265 + AT_rich Low_complexity Low_complexity 1 20 -13 2098 131 7 0 chr1 202979088 202979370 -39684983 + AluSx SINE Alu 1 284 -28 23 0 0 29 chr1 202979370 202979384 -39684969 + AT_rich Low_complexity Low_complexity 20 33 0 628 187 39 60 chr1 202979567 202979749 -39684604 + MER53 DNA DNA 4 181 -8 1488 265 59 62 chr1 202979762 202980358 -39683995 + MLT1E2 LTR MaLR 1 594 -32 1570 191 23 7 chr1 202980359 202980658 -39683695 - AluJo SINE Alu -8 304 1 675 188 0 23 chr1 202980669 202980802 -39683551 - FLAM_A SINE Alu -2 131 2 23 0 0 0 chr1 202980881 202980904 -39683449 + AT_rich Low_complexity Low_complexity 1 23 0 1804 140 56 11 chr1 202980952 202981237 -39683116 + AluSx SINE Alu 1 298 -14 2077 125 0 42 chr1 202981689 202982002 -39682351 - AluSx SINE Alu -12 300 1 2341 162 15 2 chr1 202982108 202982504 -39681849 - MER57A LTR ERV1 -2 401 1 2159 94 31 3 chr1 202982521 202982808 -39681545 + AluSg SINE Alu 1 295 -15 1364 164 58 189 chr1 202982811 202983384 -39680969 - LTR8A LTR ERV1 -229 498 1 385 318 32 8 chr1 202983617 202983743 -39680610 + MIR SINE MIR 12 140 -122 1958 149 0 48 chr1 202983771 202983917 -39680436 + AluSx SINE Alu 1 126 -186 2489 64 7 0 chr1 202983917 202984214 -39680139 + AluY SINE Alu 1 299 -12 1958 149 0 48 chr1 202984214 202984376 -39679977 + AluSx SINE Alu 126 294 -18 351 328 30 23 chr1 202984504 202984635 -39679718 + L2 LINE L2 3141 3272 0 225 0 0 0 chr1 202984689 202984714 -39679639 + (T)n Simple_repeat Simple_repeat 1 25 0 2000 128 0 3 chr1 202985399 202985687 -39678666 - AluSx SINE Alu -14 298 12 196 312 32 11 chr1 202986076 202986169 -39678184 - L2 LINE L2 -208 3064 2970 195 42 0 0 chr1 202986413 202986437 -39677916 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 53 0 0 chr1 202986648 202986686 -39677667 + AT_rich Low_complexity Low_complexity 1 38 0 664 174 9 0 chr1 202986687 202986796 -39677557 - FLAM_C SINE Alu -12 131 22 2460 73 7 0 chr1 202986895 202987195 -39677158 + AluSp SINE Alu 1 302 -11 1489 186 54 0 chr1 202987431 202987710 -39676643 - AluJb SINE Alu -18 294 1 3234 174 16 4 chr1 202988313 202988859 -39675494 + MER41D LTR ERV1 1 553 -4 245 315 71 31 chr1 202989092 202989178 -39675175 + MIR3 SINE MIR 77 171 -37 432 223 161 0 chr1 202989178 202989290 -39675063 + MER94 DNA DNA 2 131 -3 245 315 71 31 chr1 202989290 202989330 -39675023 + MIR3 SINE MIR 171 208 0 763 186 0 0 chr1 202989673 202989813 -39674540 + FLAM_C SINE Alu 2 141 -2 1085 149 12 0 chr1 202991212 202991380 -39672973 - MER58B DNA MER1_type 0 341 172 456 202 10 19 chr1 202991388 202991492 -39672861 + U5 snRNA snRNA 14 116 0 2090 128 0 0 chr1 202991522 202991841 -39672512 + AluSx SINE Alu 1 319 0 314 254 16 0 chr1 202991841 202991904 -39672449 - MER58B DNA MER1_type -160 181 1 2443 91 0 0 chr1 202993571 202993879 -39670474 - AluY SINE Alu -3 308 1 394 285 76 13 chr1 202994534 202994692 -39669661 + MIR SINE MIR 81 248 -14 21 0 0 0 chr1 202994929 202994950 -39669403 + AT_rich Low_complexity Low_complexity 1 21 0 234 313 28 49 chr1 202995510 202995654 -39668699 + L2 LINE L2 2535 2675 -639 1989 212 94 33 chr1 202996248 202996757 -39667596 - MLT1F LTR MaLR -2 540 1 1505 135 155 0 chr1 202996923 202997168 -39667185 - AluSx SINE Alu -19 293 11 2383 101 0 0 chr1 202997700 202998008 -39666345 - AluSg1 SINE Alu -1 308 1 24 0 0 0 chr1 202998754 202998778 -39665575 + AT_rich Low_complexity Low_complexity 1 24 0 571 107 6 137 chr1 202999409 202999577 -39664776 - L1MCa LINE L1 -5136 1290 1145 204 40 0 0 chr1 203099584 203099609 -39564744 + (TG)n Simple_repeat Simple_repeat 1 25 0 304 244 118 22 chr1 203099717 203099852 -39564501 + L1ME4a LINE L1 5966 6113 -8 229 283 19 0 chr1 203100080 203100133 -39564220 + MIR3 SINE MIR 111 164 -44 181 280 0 20 chr1 203100228 203100278 -39564075 + L3 LINE CR1 1297 1345 -232 331 315 39 8 chr1 203100554 203100684 -39563669 + MIR SINE MIR 49 182 -80 191 325 48 12 chr1 203100737 203100820 -39563533 - L3b LINE CR1 -206 1377 1292 234 296 80 0 chr1 203101434 203101522 -39562831 - L2 LINE L2 -46 3226 3132 200 375 54 36 chr1 203102192 203102304 -39562049 + L2 LINE L2 3151 3264 -8 714 333 159 8 chr1 203102393 203102882 -39561471 + L2 LINE L2 2257 2819 -495 1115 224 0 0 chr1 203102887 203103106 -39561247 - MER58A DNA MER1_type -5 219 1 469 334 107 29 chr1 203103119 203103568 -39560785 + L2 LINE L2 2830 3313 0 493 272 8 38 chr1 203103661 203103896 -39560457 + L1ME4a LINE L1 5550 5777 -344 1883 161 3 3 chr1 203103955 203104271 -39560082 + L1MC1 LINE L1 6011 6326 -7 27 29 0 0 chr1 203104277 203104311 -39560042 + AT_rich Low_complexity Low_complexity 1 34 0 3690 189 97 1 chr1 203104346 203105224 -39559129 - MER45B DNA AcHobo 0 1040 63 216 163 0 0 chr1 203105381 203105424 -39558929 + (CA)n Simple_repeat Simple_repeat 2 44 0 301 223 87 19 chr1 203105434 203105537 -39558816 + L1ME4a LINE L1 5969 6078 -43 186 43 0 0 chr1 203106048 203106071 -39558282 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 324 276 23 11 chr1 203106159 203106246 -39558107 + L2 LINE L2 3185 3272 0 203 301 41 0 chr1 203107085 203107158 -39557195 + (GAATG)n Simple_repeat Simple_repeat 5 80 0 1267 199 55 11 chr1 203108298 203108659 -39555694 - L1 LINE L1 -1607 4539 4163 3502 179 11 8 chr1 203109134 203109866 -39554487 + L1 LINE L1 4066 4799 -1347 217 190 0 35 chr1 203109920 203109978 -39554375 + (CCCCG)n Simple_repeat Simple_repeat 3 58 0 21 71 0 0 chr1 203110264 203110306 -39554047 + GC_rich Low_complexity Low_complexity 1 42 0 242 364 24 15 chr1 203111975 203112088 -39552265 + MIR SINE MIR 2 116 -92 286 316 77 48 chr1 203112381 203112549 -39551804 - MIR3 SINE MIR -7 201 29 259 264 198 0 chr1 203112685 203112776 -39551577 + MER81 DNA DNA 3 111 -3 180 0 0 0 chr1 203113560 203113580 -39550773 + (CA)n Simple_repeat Simple_repeat 1 20 0 25 31 0 0 chr1 203113766 203113798 -39550555 + AT_rich Low_complexity Low_complexity 1 32 0 2303 240 50 14 chr1 203114121 203114824 -39549529 - L1MC4 LINE L1 -489 7553 6826 1215 183 52 8 chr1 203114824 203115076 -39549277 + AluJo SINE Alu 44 306 -6 896 203 75 112 chr1 203115102 203115410 -39548943 - L1MC4 LINE L1 -1212 6830 6537 1610 203 3 3 chr1 203115410 203115706 -39548647 - AluJb SINE Alu -16 296 1 896 203 75 112 chr1 203115706 203115782 -39548571 - L1MC4 LINE L1 -1505 6537 6460 702 289 176 22 chr1 203116108 203116867 -39547486 - L1MEc LINE L1 -4517 2605 1730 531 326 43 17 chr1 203116861 203117208 -39547145 - L1MEc LINE L1 -4937 1486 1131 * 252 0 0 0 chr1 203117619 203117647 -39546706 + (TA)n Simple_repeat Simple_repeat 2 29 0 2270 108 0 0 chr1 203117647 203117942 -39546411 - AluSx SINE Alu -17 295 1 495 278 53 74 chr1 203118018 203118435 -39545918 - L1MEc LINE L1 -5956 467 60 197 361 7 65 chr1 203119771 203119926 -39544427 + L2 LINE L2 2243 2388 -926 200 299 15 15 chr1 203120195 203120262 -39544091 + L2 LINE L2 3235 3301 -12 337 279 20 41 chr1 203120282 203120429 -39543924 - MIR SINE MIR -58 204 61 1434 213 129 92 chr1 203122097 203122600 -39541753 + MLT1E2 LTR MaLR 18 548 -78 1588 208 7 3 chr1 203122600 203122889 -39541464 + AluJo SINE Alu 12 301 -11 1434 213 129 92 chr1 203122889 203122972 -39541381 + MLT1E2 LTR MaLR 548 626 0 1795 252 46 7 chr1 203123830 203124370 -39539983 + L1MD3 LINE L1 7404 7964 -31 301 345 0 18 chr1 203124372 203124485 -39539868 + MIR3 SINE MIR 64 174 -34 1427 179 12 98 chr1 203124583 203124777 -39539576 + MLT1A2 LTR MaLR 1 143 -231 438 36 0 0 chr1 203124777 203124833 -39539520 + (TC)n Simple_repeat Simple_repeat 2 57 0 1427 179 12 98 chr1 203124833 203125047 -39539306 + MLT1A2 LTR MaLR 143 374 0 1688 183 0 49 chr1 203125776 203126082 -39538271 + AluSx SINE Alu 1 291 -21 2325 174 8 28 chr1 203126206 203126677 -39537676 + MER4E LTR ERV1 310 771 -8 1727 168 33 23 chr1 203126787 203127090 -39537263 + AluJb SINE Alu 1 306 -6 1704 170 100 35 chr1 203127239 203127668 -39536685 + LTR2B LTR ERV1 34 490 0 511 236 32 38 chr1 203127788 203127945 -39536408 - LTR1B LTR ERV1 -328 498 343 481 252 121 12 chr1 203128008 203128199 -39536154 - LTR1 LTR ERV1 -564 221 42 3091 209 18 50 chr1 203128350 203129338 -39535015 + L1MCa LINE L1 1 919 -5126 3134 144 12 4 chr1 203129341 203129849 -39534504 - MER41E LTR ERV1 0 512 1 1614 184 30 69 chr1 203129930 203130435 -39533918 + L1MCa LINE L1 926 1410 -5154 279 79 0 0 chr1 203130544 203130582 -39533771 + (TCTCC)n Simple_repeat Simple_repeat 1 38 0 2091 125 3 0 chr1 203130582 203130869 -39533484 - AluSx SINE Alu -24 288 1 1531 156 118 37 chr1 203130869 203131325 -39533028 + L1MCa LINE L1 1891 2383 -4181 295 306 25 0 chr1 203131324 203131484 -39532869 + L1MEc LINE L1 1304 1467 -4929 * 341 213 55 79 chr1 203131483 203131647 -39532706 + L1MC5 LINE L1 7344 7503 -458 272 293 28 21 chr1 203131880 203132032 -39532321 + L1MEc LINE L1 1519 1710 -866 2242 106 3 13 chr1 203132112 203132423 -39531930 + AluSx SINE Alu 1 308 -4 336 299 145 9 chr1 203132963 203133301 -39531052 + L1MEc LINE L1 2185 2568 -3647 313 286 111 0 chr1 203133333 203133550 -39530803 + L1MEc LINE L1 2662 2902 -3313 2179 108 0 3 chr1 203133556 203133852 -39530501 + AluSc SINE Alu 2 296 -13 24 0 0 0 chr1 203133908 203133932 -39530421 + AT_rich Low_complexity Low_complexity 1 24 0 216 256 0 23 chr1 203134343 203134519 -39529834 + (TGG)n Simple_repeat Simple_repeat 3 174 0 2936 175 14 9 chr1 203134743 203135325 -39529028 - L1MB1 LINE L1 0 6168 5584 284 130 0 0 chr1 203135433 203135479 -39528874 + MER103 DNA DNA 33 78 -88 855 237 108 4 chr1 203135500 203135732 -39528621 - LTR39 LTR ERV1 0 783 528 * 1114 188 55 37 chr1 203135725 203135997 -39528356 - LTR39 LTR ERV1 -386 397 121 1740 165 39 0 chr1 203135997 203136282 -39528071 - AluSx SINE Alu -16 296 1 1321 168 47 156 chr1 203136341 203136937 -39527416 + LTR8A LTR ERV1 183 713 -14 198 241 17 52 chr1 203136989 203137047 -39527306 + L2 LINE L2 3258 3313 0 1529 184 207 20 chr1 203137349 203137799 -39526554 + LTR48 LTR ERV1 1 534 -253 351 0 0 0 chr1 203137942 203137981 -39526372 + (CA)n Simple_repeat Simple_repeat 1 39 0 471 268 203 32 chr1 203138067 203138467 -39525886 - L1MC/D LINE L1 -2009 5799 5332 235 173 19 0 chr1 203138489 203138541 -39525812 - L1MC/D LINE L1 -848 5298 5246 309 346 88 0 chr1 203138747 203138883 -39525470 - MIR SINE MIR -113 149 2 221 338 104 26 chr1 203138896 203138973 -39525380 + L2 LINE L2 3155 3237 -35 1557 187 103 10 chr1 203139367 203139970 -39524383 + LTR48 LTR ERV1 3 548 -96 183 156 0 0 chr1 203140769 203140801 -39523552 + (TTG)n Simple_repeat Simple_repeat 2 33 0 225 108 0 0 chr1 203140812 203140849 -39523504 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 251 125 0 0 chr1 203143978 203144026 -39520327 - AluSc SINE Alu 0 299 252 289 244 61 78 chr1 203144229 203144307 -39520046 - MIR SINE MIR -33 229 152 2381 92 0 0 chr1 203144307 203144611 -39519742 - AluY SINE Alu -7 304 1 289 244 61 78 chr1 203144611 203144647 -39519706 - MIR SINE MIR -110 152 117 333 308 67 0 chr1 203146926 203147030 -39517323 + L2 LINE L2 3202 3312 -1 1712 165 41 11 chr1 203147137 203147747 -39516606 - MER39 LTR ERV1 0 707 1 2273 84 30 0 chr1 203147902 203148200 -39516153 + AluSp SINE Alu 1 307 -6 182 196 0 22 chr1 203148208 203148254 -39516099 + L2 LINE L2 3227 3271 -1 478 148 0 23 chr1 203148370 203148458 -39515895 - AluSg/x SINE Alu -15 295 210 595 195 128 15 chr1 203148591 203148786 -39515567 + L1 LINE L1 3647 3863 -2283 2349 71 3 32 chr1 203149815 203150126 -39514227 - AluSg SINE Alu -8 302 1 1360 138 13 0 chr1 203151871 203152110 -39512243 + LTR49 LTR ERV1 1 242 -353 1753 140 27 7 chr1 203152213 203152506 -39511847 - MER50 LTR ERV1 -435 299 1 * 1958 206 20 0 chr1 203152506 203152897 -39511456 + LTR26E LTR ERV1 224 622 0 2304 114 0 3 chr1 203152963 203153271 -39511082 - AluSg SINE Alu -3 307 1 842 177 7 7 chr1 203153287 203153434 -39510919 - FRAM SINE Alu -20 156 10 1320 182 46 14 chr1 203153446 203153726 -39510627 + MLT1A1 LTR MaLR 37 325 -40 1798 156 38 26 chr1 203153726 203154156 -39510197 + LTR23 LTR ERV1 1 467 0 2602 211 20 4 chr1 203155278 203155785 -39508568 + MLT2B2 LTR ERVL 1 515 0 2123 159 83 8 chr1 203156056 203156452 -39507901 + MSTA LTR MaLR 3 428 0 422 256 271 0 chr1 203156689 203156822 -39507531 - MER5A DNA MER1_type -6 183 15 5037 224 30 25 chr1 203157762 203159427 -39504926 + L1MB7 LINE L1 3784 5451 -729 557 264 31 6 chr1 203159430 203159593 -39504760 + HERV16-B2 LTR ERVL 39 205 -4791 2393 95 0 0 chr1 203159795 203160090 -39504263 - AluY SINE Alu -16 295 1 1786 149 76 0 chr1 203160112 203160454 -39503899 + L1MB7 LINE L1 5491 5858 -326 1665 208 38 99 chr1 203160481 203161039 -39503314 + MER77 LTR ERV1 55 578 -27 1413 194 20 0 chr1 203161089 203161393 -39502960 + L1MB7 LINE L1 5852 6161 -23 1831 136 3 93 chr1 203162101 203162425 -39501928 - AluSq SINE Alu -18 295 1 200 35 35 0 chr1 203162635 203162664 -39501689 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1839 178 0 3 chr1 203162666 203162952 -39501401 - AluJo SINE Alu -27 285 1 335 302 51 27 chr1 203163130 203163299 -39501054 - MIR SINE MIR -62 146 13 469 314 127 44 chr1 203163507 203163736 -39500617 + MIR SINE MIR 2 249 -13 186 333 0 78 chr1 203164009 203164099 -39500254 - L2 LINE L2 -29 3243 3161 273 150 17 17 chr1 203164142 203164202 -39500151 + Tigger1 DNA MER2_type 1 60 -2358 306 0 0 0 chr1 203164202 203164236 -39500117 + (T)n Simple_repeat Simple_repeat 1 34 0 910 144 5 48 chr1 203164370 203164578 -39499775 - L1PBa LINE L1 -6031 832 634 966 190 5 0 chr1 203164580 203164775 -39499578 - L1PBa LINE L1 -6665 198 3 11021 129 22 2 chr1 203164887 203166662 -39497691 - Tigger1 DNA MER2_type 0 2418 608 218 203 0 17 chr1 203168240 203168299 -39496054 + GA-rich Low_complexity Low_complexity 3 60 0 215 321 12 0 chr1 203168850 203168931 -39495422 + (TA)n Simple_repeat Simple_repeat 2 83 0 219 325 38 25 chr1 203169015 203169095 -39495258 - MIR SINE MIR -76 186 106 195 125 0 0 chr1 203169100 203169140 -39495213 + (T)n Simple_repeat Simple_repeat 1 40 0 321 209 21 90 chr1 203169631 203169776 -39494577 + MIR SINE MIR 90 216 -46 203 267 0 0 chr1 203171789 203171834 -39492519 + T-rich Low_complexity Low_complexity 2 46 0 185 111 37 93 chr1 203172377 203172431 -39491922 - L2 LINE L2 -14 3299 3249 2114 112 0 53 chr1 203172452 203172775 -39491578 + AluSx SINE Alu 1 306 -6 242 356 107 34 chr1 203172946 203173179 -39491174 - L2 LINE L2 -214 3058 2809 415 219 47 27 chr1 203173505 203173637 -39490716 - MIR SINE MIR -67 141 2 231 222 0 0 chr1 203173801 203173846 -39490507 - MER117 DNA MER1_type -113 84 40 263 203 16 16 chr1 203174172 203174236 -39490117 - L3b LINE CR1 -197 1386 1323 268 354 174 5 chr1 203174353 203174565 -39489788 + MIR SINE MIR 15 262 0 204 143 82 61 chr1 203176741 203176790 -39487563 - MIR3 SINE MIR -1 207 158 197 0 0 67 chr1 203176797 203176827 -39487526 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 214 254 18 0 chr1 203177669 203177724 -39486629 - L2 LINE L2 -2 3270 3215 8034 253 87 20 chr1 203177804 203179791 -39484562 - L1M2 LINE L1 -4724 2125 5 8251 176 24 5 chr1 203179803 203182167 -39482186 + L1MA4A LINE L1 3732 6141 -162 426 100 62 0 chr1 203182171 203182251 -39482102 + L1MA4A LINE L1 6219 6303 0 193 245 20 0 chr1 203182769 203182818 -39481535 - L2 LINE L2 -6 3307 3258 201 74 0 0 chr1 203183121 203183148 -39481205 + (CAA)n Simple_repeat Simple_repeat 1 27 0 201 250 0 0 chr1 203183420 203183468 -39480885 - L2 LINE L2 -1 3312 3265 293 238 0 0 chr1 203185073 203185136 -39479217 - MIR SINE MIR -64 144 82 215 224 0 0 chr1 203185886 203185944 -39478409 + T-rich Low_complexity Low_complexity 1 58 0 447 332 15 41 chr1 203186094 203186290 -39478063 + MIR SINE MIR 29 219 -43 308 322 104 0 chr1 203186282 203186397 -39477956 - MIR SINE MIR -96 166 40 * 459 274 206 14 chr1 203186483 203186702 -39477651 - MIR SINE MIR 0 262 2 811 250 22 0 chr1 203186901 203187081 -39477272 - MER5A DNA MER1_type -2 187 4 1718 215 30 5 chr1 203189861 203190403 -39473950 + L1M3 LINE L1 4778 5438 -742 355 287 11 64 chr1 203192206 203192394 -39471959 + MER5A DNA MER1_type 7 184 -5 302 373 24 0 chr1 203192453 203192579 -39471774 - MIR3 SINE MIR -44 164 36 485 319 57 10 chr1 203193675 203193909 -39470444 - MIR SINE MIR 0 262 14 202 314 189 16 chr1 203194279 203194464 -39469889 + L3 LINE CR1 1353 1569 -8 22 70 0 0 chr1 203194827 203194870 -39469483 + AT_rich Low_complexity Low_complexity 1 43 0 1758 153 66 0 chr1 203195349 203195505 -39468848 - AluJo SINE Alu -20 292 148 285 29 0 0 chr1 203195505 203195539 -39468814 + (TG)n Simple_repeat Simple_repeat 2 35 0 1758 153 66 0 chr1 203195539 203195656 -39468697 - AluJo SINE Alu -164 148 1 288 278 246 0 chr1 203197562 203197688 -39466665 + MIR SINE MIR 100 256 -6 23 54 0 0 chr1 203198018 203198055 -39466298 + AT_rich Low_complexity Low_complexity 1 37 0 2076 117 7 0 chr1 203199073 203199385 -39464968 - AluSx SINE Alu 0 314 1 485 141 0 0 chr1 203199666 203199730 -39464623 - AluJ/FLAM SINE Alu -247 65 2 296 232 351 6 chr1 203199908 203200076 -39464277 - MIR SINE MIR -23 239 14 294 128 21 0 chr1 203200141 203200188 -39464165 - MLT2C2 LTR ERVL 0 464 417 27 62 0 0 chr1 203200208 203200256 -39464097 + AT_rich Low_complexity Low_complexity 1 48 0 423 121 81 0 chr1 203200278 203200427 -39463926 + (TA)n Simple_repeat Simple_repeat 1 161 0 1587 221 104 33 chr1 203200435 203200888 -39463465 - MLT2B1 LTR ERVL -35 485 1 270 357 40 0 chr1 203201048 203201174 -39463179 + L3 LINE CR1 1439 1569 -8 266 273 61 58 chr1 203201309 203201513 -39462840 + MIR SINE MIR 4 252 -10 1576 271 121 26 chr1 203203795 203204331 -39460022 + MLT1K LTR MaLR 2 588 0 255 315 0 11 chr1 203205506 203205595 -39458758 + GA-rich Low_complexity Low_complexity 1 88 0 4970 36 0 2 chr1 203206119 203206675 -39457678 - L1PA5 LINE L1 -4 6150 5596 1807 218 79 116 chr1 203206823 203207606 -39456747 + MER21B LTR ERV1 1 754 -109 3598 155 19 30 chr1 203208114 203208752 -39455601 - L1MB3 LINE L1 -2 6181 5551 915 241 0 0 chr1 203208824 203208982 -39455371 - FAM SINE Alu -17 158 1 1004 254 80 90 chr1 203210392 203210927 -39453426 - MER21B LTR ERV1 -193 670 141 315 256 88 21 chr1 203210956 203211082 -39453271 - MER77 LTR ERV1 -407 198 24 499 296 69 61 chr1 203211253 203211500 -39452853 - MIR SINE MIR -12 250 2 396 256 44 0 chr1 203212143 203212233 -39452120 - MER77 LTR ERV1 -235 370 277 329 154 0 0 chr1 203212202 203212254 -39452099 - MER21B LTR ERV1 -555 308 257 * 21 0 0 0 chr1 203212347 203212368 -39451985 + AT_rich Low_complexity Low_complexity 1 21 0 313 309 49 8 chr1 203212382 203212505 -39451848 + MIR SINE MIR 74 201 -61 267 319 26 0 chr1 203213428 203213541 -39450812 - L1MC4 LINE L1 -2 8040 7925 292 282 97 28 chr1 203213569 203213817 -39450536 - L1 LINE L1 -1627 4519 4255 2703 12 0 43 chr1 203213945 203214268 -39450085 + AluYa5 SINE Alu 3 311 0 1321 112 0 0 chr1 203214275 203214454 -39449899 + AluSg/x SINE Alu 120 298 -14 421 318 20 20 chr1 203214517 203214668 -39449685 - MIR3 SINE MIR -48 160 10 192 152 0 0 chr1 203214851 203214884 -39449469 + CT-rich Low_complexity Low_complexity 2 34 0 635 168 11 0 chr1 203214894 203214989 -39449364 + LTR39 LTR ERV1 291 386 -397 207 301 65 11 chr1 203216477 203216570 -39447783 - L3 LINE CR1 -8 1569 1472 28 29 0 0 chr1 203216775 203216810 -39447543 + AT_rich Low_complexity Low_complexity 1 35 0 533 175 0 39 chr1 203217086 203217189 -39447164 - MLT1J2 LTR MaLR 0 450 352 458 279 92 48 chr1 203217250 203217479 -39446874 - MLT1J2 LTR MaLR -211 239 1 488 175 146 0 chr1 203218493 203218596 -39445757 - L1MB4 LINE L1 0 6180 6063 382 282 127 21 chr1 203219209 203219303 -39445050 - MIR SINE MIR 0 262 179 469 0 33 0 chr1 203219303 203219364 -39444989 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1984 132 21 0 chr1 203219365 203219646 -39444707 - AluSx SINE Alu -25 287 1 382 282 127 21 chr1 203219646 203219691 -39444662 - MIR SINE MIR -82 180 106 3348 146 33 4 chr1 203220728 203221243 -39443110 + MER72 LTR ERV1 1 530 -192 298 169 22 0 chr1 203221258 203221347 -39443006 + (TA)n Simple_repeat Simple_repeat 2 92 0 1058 166 16 26 chr1 203221359 203221552 -39442801 + MER72 LTR ERV1 532 722 0 3313 95 0 30 chr1 203223556 203224018 -39440335 - L1PB1 LINE L1 -1 6150 5703 1312 84 0 0 chr1 203224204 203224371 -39439982 - L1PB1 LINE L1 -487 5664 5498 2213 133 46 25 chr1 203224371 203224738 -39439615 - THE1C LTR MaLR 0 375 1 8208 127 49 5 chr1 203224738 203225973 -39438380 - THE1C-int LTR MaLR 0 1580 291 11421 216 7 8 chr1 203226078 203228986 -39435367 - L1 LINE L1 -1662 5126 2139 269 283 92 35 chr1 203229795 203230078 -39434275 - L1 LINE L1 -1627 4519 4221 2786 20 0 0 chr1 203230161 203230467 -39433886 + AluYa5 SINE Alu 1 306 -5 290 279 58 33 chr1 203230806 203231126 -39433227 - L1P LINE L1 -3686 2460 2138 254 138 52 52 chr1 203231172 203231230 -39433123 + MER116 DNA Mariner 5 62 -18 248 254 15 15 chr1 203231787 203231854 -39432499 - HAL1 LINE L1 -794 1713 1647 2016 79 68 7 chr1 203231933 203232235 -39432118 - AluY SINE Alu 0 311 1 803 174 15 0 chr1 203232296 203232428 -39431925 - FRAM SINE Alu -21 155 22 350 295 89 120 chr1 203232428 203232845 -39431508 - HAL1b LINE L1 -918 430 27 2781 145 108 124 chr1 203233090 203233878 -39430475 + MER21A LTR ERV1 18 792 -139 21 0 0 0 chr1 203234197 203234218 -39430135 + GC_rich Low_complexity Low_complexity 1 21 0 212 105 32 105 chr1 203234530 203234625 -39429728 + (CCGCG)n Simple_repeat Simple_repeat 4 91 0 386 232 53 11 chr1 203234890 203234985 -39429368 + MER21A LTR ERV1 833 931 0 306 317 43 37 chr1 203236070 203236234 -39428119 - MIR3 SINE MIR -1 207 43 249 297 31 0 chr1 203236237 203236301 -39428052 - L3 LINE CR1 -13 1564 1499 887 287 133 42 chr1 203236696 203237215 -39427138 - L3 LINE CR1 -186 1391 826 202 203 47 47 chr1 203237870 203237934 -39426419 + (CCCCAG)n Simple_repeat Simple_repeat 2 65 0 1161 273 88 42 chr1 203239201 203239876 -39424477 - L1ME3A LINE L1 -196 5908 5198 772 231 92 42 chr1 203240015 203240147 -39424206 - L1ME3A LINE L1 -918 5162 5038 2287 101 0 3 chr1 203240147 203240445 -39423908 - AluSg SINE Alu -13 297 1 772 231 92 42 chr1 203240445 203240620 -39423733 - L1ME3A LINE L1 -1042 5038 4828 2080 117 0 36 chr1 203240620 203240928 -39423425 - AluSx SINE Alu -15 297 1 772 231 92 42 chr1 203240928 203241021 -39423332 - L1ME3A LINE L1 -1252 4828 4741 * 1631 294 67 19 chr1 203241019 203241884 -39422469 - L1ME LINE L1 -4939 1089 260 1118 280 77 46 chr1 203242118 203242624 -39421729 - L1M4 LINE L1 -1769 4377 3841 2340 96 0 3 chr1 203242624 203242926 -39421427 - AluSg SINE Alu -9 301 1 1118 280 77 46 chr1 203242926 203243119 -39421234 - L1M4 LINE L1 -2305 3841 3656 288 115 58 0 chr1 203243125 203243177 -39421176 + Tigger4(Zombi) DNA MER2_type 2014 2068 -663 11125 202 18 28 chr1 203243180 203246517 -39417836 - L1PA16 LINE L1 -16 6150 2853 4724 112 3 10 chr1 203246517 203247108 -39417245 + Tigger4(Zombi) DNA MER2_type 2057 2644 -87 1731 161 129 7 chr1 203247108 203247418 -39416935 - MER7A DNA MER2_type 0 346 1 4724 112 3 10 chr1 203247418 203247505 -39416848 + Tigger4(Zombi) DNA MER2_type 2644 2730 -1 261 239 40 60 chr1 203247619 203247834 -39416519 + MLT1I LTR MaLR 98 305 -244 433 245 39 25 chr1 203247870 203248012 -39416341 + MLT1H LTR MaLR 441 549 0 252 307 102 0 chr1 203248152 203248279 -39416074 + MLT-int LTR MaLR 384 523 -1212 1535 171 14 51 chr1 203248475 203248767 -39415586 + AluJo SINE Alu 1 281 -31 1631 128 54 12 chr1 203248791 203249049 -39415304 + AluSx SINE Alu 1 269 -43 2280 124 0 0 chr1 203249083 203249390 -39414963 + AluSx SINE Alu 4 310 -2 31 26 0 0 chr1 203249390 203249428 -39414925 + AT_rich Low_complexity Low_complexity 1 38 0 2253 92 16 0 chr1 203249474 203249779 -39414574 + AluSg SINE Alu 1 310 0 14522 26 0 3 chr1 203249964 203252350 -39412003 + L1PA3 LINE L1 3748 6151 -4 2368 326 90 21 chr1 203253358 203253851 -39410502 - ERVL LTR ERVL -2261 3503 3045 2255 135 0 0 chr1 203253851 203254163 -39410190 + AluJb SINE Alu 1 312 0 2368 326 90 21 chr1 203254163 203255351 -39409002 - ERVL LTR ERVL -2719 3045 1675 695 344 38 12 chr1 203255473 203255816 -39408537 - ERVL LTR ERVL -4544 452 101 685 285 4 26 chr1 203255894 203256122 -39408231 - LTR16B LTR ERVL 0 464 242 1097 167 0 0 chr1 203256606 203256762 -39407591 + FRAM SINE Alu 4 159 -7 218 278 135 53 chr1 203256812 203256945 -39407408 - L2 LINE L2 -182 3090 2947 209 273 15 45 chr1 203256944 203257010 -39407343 + L2 LINE L2 3241 3304 -9 * 2280 203 15 13 chr1 203259148 203259606 -39404747 + MER65C LTR ERV1 3 461 0 4762 14 2 0 chr1 203259859 203260596 -39403757 - L1P2 LINE L1 -362 5793 5056 223 279 23 35 chr1 203260724 203260810 -39403543 + L2 LINE L2 2985 3069 -203 2003 145 7 0 chr1 203261242 203261539 -39402814 - AluSx SINE Alu -13 299 1 700 186 39 45 chr1 203261664 203261820 -39402533 + MLT1B LTR MaLR 1 155 -235 27 29 0 0 chr1 203262146 203262180 -39402173 + AT_rich Low_complexity Low_complexity 1 34 0 653 165 0 0 chr1 203262180 203262277 -39402076 - AluJo/FRAM SINE Alu -26 286 190 1634 11 0 0 chr1 203262278 203262454 -39401899 + AluYb8 SINE Alu 1 176 -142 475 346 15 0 chr1 203263841 203263974 -39400379 - MIR3 SINE MIR -30 178 44 33 56 0 0 chr1 203264109 203264163 -39400190 + AT_rich Low_complexity Low_complexity 1 54 0 243 343 10 39 chr1 203264191 203264293 -39400060 + MIR SINE MIR 42 140 -68 201 74 0 0 chr1 203265736 203265763 -39398590 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 322 290 30 10 chr1 203265803 203265903 -39398450 - MIR SINE MIR -87 121 20 286 279 75 88 chr1 203266612 203266759 -39397594 + MIR SINE MIR 3 147 -115 1171 273 110 29 chr1 203266761 203267178 -39397175 - MLT1J LTR MaLR -4 507 57 312 120 0 0 chr1 203267887 203267940 -39396413 - MLT2D LTR ERVL -3 411 367 225 154 0 0 chr1 203267960 203267999 -39396354 + (TG)n Simple_repeat Simple_repeat 2 40 0 2019 174 17 23 chr1 203268001 203268381 -39395972 - MLT2D LTR ERVL -40 480 5 261 0 0 0 chr1 203268600 203268629 -39395724 + (CA)n Simple_repeat Simple_repeat 1 29 0 832 274 11 34 chr1 203269180 203269446 -39394907 + MIR SINE MIR 1 260 -2 239 173 19 0 chr1 203271544 203271596 -39392757 + (TA)n Simple_repeat Simple_repeat 2 54 0 507 280 58 43 chr1 203272908 203273165 -39391188 - MIR SINE MIR 0 262 2 259 175 0 0 chr1 203274033 203274073 -39390280 + MER34 LTR ERV1 7 46 -496 1486 168 99 92 chr1 203274096 203274244 -39390109 + MER39 LTR ERV1 270 415 -292 1657 196 0 7 chr1 203274244 203274529 -39389824 + AluJb SINE Alu 1 283 -29 1486 168 99 92 chr1 203274529 203274815 -39389538 + MER39 LTR ERV1 415 707 0 384 207 15 104 chr1 203274842 203274977 -39389376 + MER103 DNA DNA 2 124 -42 1361 289 70 19 chr1 203275560 203276200 -39388153 - HAL1 LINE L1 -742 1765 1093 605 316 105 29 chr1 203276224 203276566 -39387787 - MLT1J2 LTR MaLR -3 447 80 307 304 81 84 chr1 203276703 203276790 -39387563 - HAL1 LINE L1 -1429 1078 992 1731 170 0 27 chr1 203276790 203277090 -39387263 - AluSx SINE Alu -3 309 18 307 304 81 84 chr1 203277090 203277334 -39387019 - HAL1 LINE L1 -1515 992 748 582 210 139 0 chr1 203279455 203279599 -39384754 + MER69A DNA AcHobo 2 165 -12 261 313 8 31 chr1 203279968 203280096 -39384257 + GA-rich Low_complexity Low_complexity 1 125 0 311 261 150 68 chr1 203281587 203281821 -39382532 - MIR SINE MIR -1 261 9 209 366 98 0 chr1 203281823 203281905 -39382448 - MIR SINE MIR -85 123 34 206 322 100 22 chr1 203282292 203282382 -39381971 - L3b LINE CR1 -31 1552 1456 222 37 0 0 chr1 203282480 203282507 -39381846 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 1634 106 172 0 chr1 203282509 203282765 -39381588 - AluSg SINE Alu 0 300 1 464 297 24 18 chr1 203283776 203283941 -39380412 + L2 LINE L2 2147 2312 -1002 329 0 24 0 chr1 203283946 203283987 -39380366 + (CA)n Simple_repeat Simple_repeat 1 42 0 483 87 0 0 chr1 203284236 203284305 -39380048 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 414 288 45 8 chr1 203284926 203285058 -39379295 + L1ME1 LINE L1 6021 6157 -9 406 268 139 19 chr1 203286228 203286437 -39377916 - MIR SINE MIR -23 239 6 197 335 136 23 chr1 203287793 203287969 -39376384 + L2 LINE L2 2871 3066 -206 253 257 68 0 chr1 203288625 203288699 -39375654 - L2 LINE L2 -36 3277 3199 218 295 0 16 chr1 203288718 203288779 -39375574 + L2 LINE L2 3242 3301 -12 896 309 88 17 chr1 203288779 203289190 -39375163 + L2 LINE L2 2097 2536 -778 450 269 97 22 chr1 203289187 203289321 -39375032 + L2 LINE L2 3165 3308 -5 * 1057 330 40 20 chr1 203290592 203291046 -39373307 - LTR16B LTR ERVL -1 463 1 207 176 0 0 chr1 203291731 203291765 -39372588 + GA-rich Low_complexity Low_complexity 1 34 0 207 324 191 37 chr1 203293436 203293572 -39370781 - L2 LINE L2 0 3272 3116 216 0 0 0 chr1 203294005 203294029 -39370324 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1866 179 17 0 chr1 203296186 203296487 -39367866 + AluSx SINE Alu 1 306 -6 209 290 73 40 chr1 203296583 203296707 -39367646 - L2 LINE L2 0 3272 3145 199 343 43 0 chr1 203298200 203298270 -39366083 + MIR SINE MIR 33 105 -103 1806 113 12 16 chr1 203299085 203299341 -39365012 - AluSx SINE Alu -57 255 1 257 301 14 0 chr1 203299585 203299658 -39364695 - L2 LINE L2 -2 3270 3197 1759 203 0 3 chr1 203299744 203300055 -39364298 - AluJo SINE Alu -2 310 1 756 225 193 68 chr1 203300282 203300606 -39363747 + HAL1 LINE L1 977 1259 -1248 3534 100 8 0 chr1 203300606 203301087 -39363266 + L1PA13 LINE L1 5677 6161 -2 756 225 193 68 chr1 203301087 203301265 -39363088 + HAL1 LINE L1 1259 1542 -965 1908 214 128 40 chr1 203301625 203302306 -39362047 - HsTC2a DNA MER2_type -3 741 1 355 279 41 0 chr1 203302448 203302572 -39361781 - MIR SINE MIR -62 146 41 269 364 23 11 chr1 203302971 203303059 -39361294 + L2 LINE L2 3158 3246 -26 277 407 66 0 chr1 203303142 203303324 -39361029 - L2 LINE L2 -558 2756 2563 361 320 104 39 chr1 203303376 203303885 -39360468 - L2 LINE L2 -1159 2155 1614 394 323 117 0 chr1 203305577 203305794 -39358559 + MIR SINE MIR 9 256 -6 706 216 147 5 chr1 203306120 203306310 -39358043 - MIR SINE MIR -10 252 36 383 203 14 0 chr1 203306866 203306940 -39357413 + MER96 DNA MER1_type? 11 85 -90 1904 196 14 14 chr1 203307000 203307347 -39357006 - MLT1A1 LTR MaLR 0 365 19 940 142 33 104 chr1 203308993 203309205 -39355148 + AluJo SINE Alu 5 201 -111 286 263 0 0 chr1 203310411 203310468 -39353885 - MER94 DNA DNA 0 134 78 1921 194 8 30 chr1 203311639 203312006 -39352347 + MLT1A1 LTR MaLR 7 365 0 3610 101 6 0 chr1 203312165 203312641 -39351712 + L1PA14 LINE L1 5680 6158 -3 1162 214 39 7 chr1 203312686 203312966 -39351387 - MER114 LTR ERV -35 613 325 616 220 80 30 chr1 203313023 203313223 -39351130 - MER114 LTR ERV -435 213 4 265 286 0 0 chr1 203314929 203314999 -39349354 - MIR SINE MIR -120 142 73 232 240 100 60 chr1 203315218 203315318 -39349035 + L2 LINE L2 3154 3257 -15 200 253 308 0 chr1 203315460 203315551 -39348802 - L2 LINE L2 -2 3311 3193 305 306 112 28 chr1 203315941 203316137 -39348216 - MIR SINE MIR -54 208 1 236 335 47 71 chr1 203316137 203316420 -39347933 + L2 LINE L2 2640 2914 -400 195 114 0 0 chr1 203317112 203317147 -39347206 + (TC)n Simple_repeat Simple_repeat 2 36 0 2111 97 22 0 chr1 203320128 203320433 -39343920 + AluSx SINE Alu 1 311 0 453 46 231 0 chr1 203321662 203321727 -39342626 + MADE1 DNA Mariner 1 80 0 692 272 54 21 chr1 203322609 203322861 -39341492 + MIR SINE MIR 4 252 -10 260 198 156 10 chr1 203323054 203323150 -39341203 + L1ME4a LINE L1 5990 6099 -22 26 0 0 0 chr1 203323171 203323197 -39341156 + AT_rich Low_complexity Low_complexity 1 26 0 341 42 0 21 chr1 203323978 203324026 -39340327 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 1220 56 0 0 chr1 203324026 203324169 -39340184 - MER107 DNA MER1_type -52 145 3 675 210 18 30 chr1 203324413 203324580 -39339773 - MIR SINE MIR -21 241 77 385 312 40 6 chr1 203325149 203325322 -39339031 - MIR SINE MIR -81 181 3 225 308 112 0 chr1 203326045 203326152 -39338201 - MIR SINE MIR -52 210 92 221 247 65 0 chr1 203326482 203326559 -39337794 + MIR SINE MIR 60 141 -121 186 71 0 0 chr1 203327130 203327158 -39337195 + (A)n Simple_repeat Simple_repeat 1 28 0 291 268 98 18 chr1 203328490 203328602 -39335751 - MIR SINE MIR -62 146 26 379 307 118 19 chr1 203329071 203329283 -39335070 - MIR SINE MIR -10 252 20 788 257 0 11 chr1 203329386 203329565 -39334788 - MER45A DNA AcHobo -1 177 1 2261 118 0 9 chr1 203330662 203330977 -39333376 - AluSx SINE Alu 0 312 1 457 189 116 0 chr1 203332913 203333008 -39331345 - MLT1D LTR MaLR 0 626 521 3701 77 10 0 chr1 203333008 203333502 -39330851 - L1P LINE L1 -2040 4106 3608 2593 96 0 3 chr1 203333502 203333867 -39330486 + L1PA7 LINE L1 5791 6154 0 1975 184 47 13 chr1 203333870 203334255 -39330098 - MLT1D LTR MaLR -106 399 2 545 289 103 49 chr1 203334404 203334905 -39329448 - L1MC4a LINE L1 -365 5756 5353 218 270 67 90 chr1 203336302 203336480 -39327873 + MIR SINE MIR 29 202 -60 384 298 158 5 chr1 203337524 203337739 -39326614 - MIR SINE MIR -13 249 2 1949 137 30 0 chr1 203337782 203337958 -39326395 - AluSx SINE Alu -4 308 118 279 0 0 0 chr1 203337958 203337989 -39326364 + (TG)n Simple_repeat Simple_repeat 2 32 0 1949 137 30 0 chr1 203337989 203338111 -39326242 - AluSx SINE Alu -194 118 1 403 284 65 19 chr1 203338195 203338350 -39326003 + MIR SINE MIR 55 216 -46 26 30 0 0 chr1 203339208 203339241 -39325112 + AT_rich Low_complexity Low_complexity 1 33 0 204 316 63 0 chr1 203340866 203340945 -39323408 - L2 LINE L2 -1 3312 3229 21 0 0 0 chr1 203341580 203341601 -39322752 + AT_rich Low_complexity Low_complexity 1 21 0 212 321 75 0 chr1 203342995 203343101 -39321252 - L2 LINE L2 -9 3263 3150 2272 125 0 0 chr1 203343242 203343554 -39320799 + AluSx SINE Alu 1 312 0 362 289 164 4 chr1 203343942 203344167 -39320186 + MIR SINE MIR 2 262 0 215 292 60 65 chr1 203345719 203345887 -39318466 - MER5A DNA MER1_type -22 167 1 446 230 104 15 chr1 203345949 203346084 -39318269 + MIR SINE MIR 47 193 -69 1567 168 75 7 chr1 203346112 203346240 -39318113 + AluJo SINE Alu 1 119 -193 252 0 0 0 chr1 203346240 203346268 -39318085 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1567 168 75 7 chr1 203346268 203346431 -39317922 + AluJo SINE Alu 119 312 0 670 190 0 3 chr1 203346952 203347190 -39317163 + AluJo SINE Alu 2 310 -2 1991 147 0 3 chr1 203347294 203347580 -39316773 + AluSx SINE Alu 1 285 -27 195 352 29 0 chr1 203347871 203347976 -39316377 + L2 LINE L2 2931 3038 -234 411 229 96 32 chr1 203348764 203348921 -39315432 - MIR3 SINE MIR -6 202 36 466 291 36 66 chr1 203349185 203349487 -39314866 + L2 LINE L2 3021 3313 0 2371 112 3 0 chr1 203350062 203350374 -39313979 - AluSp SINE Alu 0 313 1 4158 91 2 14 chr1 203351376 203351936 -39312417 + MER41A LTR ERV1 1 553 -1 191 235 98 0 chr1 203352257 203352308 -39312045 - MIR SINE MIR -91 117 62 210 238 0 0 chr1 203352604 203352646 -39311707 + CT-rich Low_complexity Low_complexity 1 42 0 438 235 68 30 chr1 203353480 203353612 -39310741 - L2 LINE L2 0 3272 3136 1463 266 89 14 chr1 203353899 203354407 -39309946 - LTR48B LTR ERV1 -17 627 82 280 197 0 61 chr1 203354395 203354461 -39309892 - LTR29 LTR ERV1 -424 198 137 * 349 288 68 0 chr1 203354443 203354561 -39309792 - MER34 LTR ERV1 -416 126 1 27 29 0 0 chr1 203355245 203355279 -39309074 + AT_rich Low_complexity Low_complexity 1 34 0 348 241 71 9 chr1 203355323 203355435 -39308918 + MIR SINE MIR 26 144 -64 22 0 0 0 chr1 203356410 203356432 -39307921 + AT_rich Low_complexity Low_complexity 1 22 0 350 205 24 87 chr1 203356560 203356687 -39307666 + L2 LINE L2 2958 3076 -196 500 249 55 6 chr1 203356875 203357040 -39307313 + MIR SINE MIR 61 233 -29 283 176 0 27 chr1 203357220 203357294 -39307059 + CT-rich Low_complexity Low_complexity 2 73 0 1901 156 18 3 chr1 203358464 203358790 -39305563 + L1MC1 LINE L1 6002 6332 -1 2198 130 0 3 chr1 203358861 203359162 -39305191 + AluSg SINE Alu 1 300 -10 1557 265 30 47 chr1 203359172 203359681 -39304672 + MLT1G LTR MaLR 51 550 -40 1797 159 67 47 chr1 203359840 203360199 -39304154 + MER47A DNA MER2_type 1 366 0 377 243 197 46 chr1 203361224 203361376 -39302977 - MIR3 SINE MIR -11 197 23 1229 212 125 94 chr1 203362227 203362756 -39301597 - MLT1H LTR MaLR 0 549 5 540 200 15 15 chr1 203362803 203362933 -39301420 + L1MB8 LINE L1 6049 6178 0 225 324 15 15 chr1 203363076 203363144 -39301209 - L3b LINE CR1 -1 1582 1515 220 408 0 0 chr1 203363939 203364091 -39300262 + GA-rich Low_complexity Low_complexity 1 152 0 737 223 35 35 chr1 203365018 203365215 -39299138 - MIR SINE MIR -56 206 10 720 283 30 9 chr1 203365719 203365952 -39298401 + MIR SINE MIR 5 242 -20 352 265 105 26 chr1 203366716 203366905 -39297448 + MIR SINE MIR 32 231 -31 214 298 0 0 chr1 203367653 203367710 -39296643 - L2 LINE L2 -6 3307 3251 217 268 0 18 chr1 203368058 203368114 -39296239 + MIR SINE MIR 94 148 -114 219 69 0 0 chr1 203368621 203368650 -39295703 + (TA)n Simple_repeat Simple_repeat 2 30 0 1439 257 59 109 chr1 203368947 203369693 -39294660 - MER21B LTR ERV1 -149 714 6 809 338 99 25 chr1 203369955 203370979 -39293374 - L2 LINE L2 -1141 2173 1075 279 0 0 0 chr1 203371050 203371081 -39293272 + (GA)n Simple_repeat Simple_repeat 2 32 0 457 273 35 113 chr1 203371398 203371595 -39292758 + MER102b DNA MER1_type 3 167 -1261 2448 85 0 3 chr1 203371595 203371902 -39292451 + AluSx SINE Alu 1 306 -6 457 273 35 113 chr1 203371902 203372023 -39292330 + MER102b DNA MER1_type 167 296 -45 318 341 72 24 chr1 203372122 203372371 -39291982 - L2 LINE L2 -2813 501 241 490 300 32 64 chr1 203374443 203374693 -39289660 - MIR SINE MIR 0 262 21 479 247 153 0 chr1 203375156 203375326 -39289027 + L1ME3A LINE L1 5513 5708 -454 411 217 56 37 chr1 203375360 203375521 -39288832 + L1ME3A LINE L1 5813 5976 -194 234 0 0 0 chr1 203375539 203375565 -39288788 + (A)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr1 203375711 203375734 -39288619 + AT_rich Low_complexity Low_complexity 1 23 0 264 311 48 39 chr1 203375930 203376033 -39288320 - L3 LINE CR1 -71 1506 1403 2896 138 38 2 chr1 203376075 203376553 -39287800 - L1MB3 LINE L1 -1 6182 5688 1094 339 208 24 chr1 203376553 203377717 -39286636 - L3 LINE CR1 -160 1417 40 2150 106 3 0 chr1 203377804 203378106 -39286247 - AluSx SINE Alu -9 303 1 4447 74 2 0 chr1 203378443 203378996 -39285357 + MER41A LTR ERV1 1 554 0 221 160 40 20 chr1 203379283 203379333 -39285020 + L3 LINE CR1 1527 1577 0 205 255 0 0 chr1 203379912 203379959 -39284394 + (CCA)n Simple_repeat Simple_repeat 2 48 0 286 290 197 22 chr1 203380695 203380878 -39283475 + L3b LINE CR1 1271 1485 -98 1049 320 14 33 chr1 203381022 203381444 -39282909 - L2 LINE L2 -669 2645 2232 2348 91 0 0 chr1 203381959 203382267 -39282086 - AluSq SINE Alu -5 308 1 276 279 103 30 chr1 203383258 203383423 -39280930 - MIR SINE MIR -50 212 31 519 188 257 0 chr1 203383845 203383989 -39280364 - MER5A DNA MER1_type 0 189 9 209 139 28 0 chr1 203384003 203384039 -39280314 - MIR3 SINE MIR -15 193 157 406 313 14 28 chr1 203384248 203384392 -39279961 - MIR3 SINE MIR -49 159 18 757 253 6 17 chr1 203386188 203386362 -39277991 - MIR3 SINE MIR -7 201 30 310 234 190 29 chr1 203386875 203387012 -39277341 + MIR3 SINE MIR 1 159 -49 285 335 88 0 chr1 203387178 203387306 -39277047 - MIR SINE MIR -72 136 42 198 0 0 0 chr1 203387404 203387426 -39276927 + (GA)n Simple_repeat Simple_repeat 1 22 0 608 258 72 63 chr1 203387434 203387752 -39276601 - MER102a DNA MER1_type -9 321 1 254 282 128 0 chr1 203389139 203389217 -39275136 + MIR SINE MIR 53 140 -122 465 220 169 62 chr1 203389724 203389901 -39274452 + MER63A DNA MER1_type 5 200 -10 234 339 87 26 chr1 203390112 203390227 -39274126 - MIR SINE MIR -67 141 20 406 193 133 0 chr1 203391717 203391800 -39272553 + L2 LINE L2 3211 3304 -9 235 297 279 0 chr1 203392687 203392798 -39271555 - L2 LINE L2 -1 3312 3171 722 315 10 52 chr1 203393242 203393486 -39270867 - L3 LINE CR1 -431 1146 916 2074 115 0 3 chr1 203393486 203393782 -39270571 - AluSg1 SINE Alu -14 295 1 722 315 10 52 chr1 203393782 203393845 -39270508 - L3 LINE CR1 -661 916 852 217 226 170 0 chr1 203394195 203394248 -39270105 - L2 LINE L2 -5 3267 3206 281 354 92 31 chr1 203396097 203396227 -39268126 + MIR3 SINE MIR 34 171 -37 189 188 0 0 chr1 203396345 203396377 -39267976 + MER5B DNA MER1_type 14 45 -133 273 98 0 0 chr1 203396913 203396954 -39267399 + (CA)n Simple_repeat Simple_repeat 1 41 0 1988 117 0 10 chr1 203397471 203397769 -39266584 - AluJb SINE Alu -17 295 1 215 200 0 0 chr1 203400724 203400764 -39263589 + (CCG)n Simple_repeat Simple_repeat 1 40 0 360 0 0 0 chr1 203400765 203400805 -39263548 + (CAG)n Simple_repeat Simple_repeat 2 41 0 375 23 0 0 chr1 203401621 203401665 -39262688 + (TG)n Simple_repeat Simple_repeat 2 45 0 449 241 0 36 chr1 203404861 203404973 -39259380 + MIR SINE MIR 50 157 -105 * 615 307 132 4 chr1 203404960 203405188 -39259165 - MIR SINE MIR 0 262 6 213 269 37 74 chr1 203405188 203405296 -39259057 + MIR SINE MIR 158 261 -1 2169 122 0 0 chr1 203405730 203406041 -39258312 - AluSx SINE Alu -1 311 1 391 286 191 7 chr1 203406900 203407047 -39257306 - MER5A DNA MER1_type -6 183 10 231 36 0 0 chr1 203407734 203407762 -39256591 + (T)n Simple_repeat Simple_repeat 1 28 0 30 45 0 0 chr1 203407784 203407828 -39256525 + AT_rich Low_complexity Low_complexity 1 44 0 200 220 266 55 chr1 203407932 203408067 -39256286 + MIR SINE MIR 8 164 -65 451 248 81 108 chr1 203408162 203408718 -39255635 + MER34 LTR ERV1 1 541 -1 2137 135 0 0 chr1 203408849 203409160 -39255193 + AluSx SINE Alu 1 311 -1 203 161 0 0 chr1 203409163 203409194 -39255159 + polypurine Low_complexity Low_complexity 2 32 0 493 229 29 36 chr1 203410351 203410491 -39253862 - MIR SINE MIR -4 258 120 1991 146 3 0 chr1 203410493 203410802 -39253551 + AluSx SINE Alu 1 310 -2 405 329 156 27 chr1 203410851 203411076 -39253277 - MIR SINE MIR -7 255 2 1919 172 51 16 chr1 203411099 203411270 -39253083 + MLT1B LTR MaLR 5 169 -221 2017 137 0 0 chr1 203411270 203411570 -39252783 + AluSx SINE Alu 12 311 -1 1919 172 51 16 chr1 203411570 203411771 -39252582 + MLT1B LTR MaLR 169 390 0 21 71 0 0 chr1 203412130 203412172 -39252181 + AT_rich Low_complexity Low_complexity 1 42 0 280 325 8 25 chr1 203412186 203412306 -39252047 - L2 LINE L2 -19 3294 3177 264 356 27 27 chr1 203412911 203413060 -39251293 - L2 LINE L2 -1 3271 3123 1268 303 41 17 chr1 203413359 203413771 -39250582 - LTR16A LTR ERVL -13 437 16 1937 341 78 43 chr1 203413807 203414364 -39249989 - HERV16 LTR ERVL -20 5322 4786 1979 108 10 14 chr1 203414364 203414660 -39249693 + AluSc SINE Alu 1 295 -14 1937 341 78 43 chr1 203414660 203415158 -39249195 - HERV16 LTR ERVL -556 4786 4307 3353 74 20 11 chr1 203415158 203415616 -39248737 + L1PA11 LINE L1 5710 6171 -3 1937 341 78 43 chr1 203415616 203416037 -39248316 - HERV16 LTR ERVL -1035 4307 3902 2281 97 3 0 chr1 203416037 203416346 -39248007 - AluSx SINE Alu -2 310 1 1937 341 78 43 chr1 203416346 203417010 -39247343 - HERV16 LTR ERVL -1440 3902 3222 248 0 31 0 chr1 203417038 203417070 -39247283 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 1133 96 28 78 chr1 203417070 203417277 -39247076 - L1MA4A LINE L1 -11 6292 6095 3509 53 0 9 chr1 203417278 203417730 -39246623 + LTR7 LTR ERV1 1 448 -2 16847 99 35 25 chr1 203417732 203420796 -39243557 + HERVH LTR ERV1 1 2987 -4726 928 128 20 0 chr1 203420790 203420938 -39243415 + HERVH LTR ERV1 3140 3290 -4423 * 982 145 0 0 chr1 203420937 203421082 -39243271 + HERVH LTR ERV1 3500 3644 -4069 * 1236 157 40 1 chr1 203421081 203421432 -39242921 + HERVH LTR ERV1 4740 5149 -2564 1369 122 33 5 chr1 203421433 203421647 -39242706 + HERVH LTR ERV1 5600 5819 -1894 * 2614 74 45 13 chr1 203421645 203422025 -39242328 + HERVH LTR ERV1 7322 7713 0 3511 62 0 7 chr1 203422025 203422476 -39241877 + LTR7 LTR ERV1 1 448 -2 704 138 6 105 chr1 203422477 203422658 -39241695 - L1MA4A LINE L1 -204 6099 5937 307 146 0 0 chr1 203422659 203422707 -39241646 - HERV16 LTR ERVL -3857 1139 1092 355 306 74 8 chr1 203422754 203422875 -39241478 - L2 LINE L2 -1 3312 3184 1807 152 0 118 chr1 203422907 203423296 -39241057 - MER7A DNA MER2_type -5 341 1 183 179 0 26 chr1 203423638 203423677 -39240676 + L2 LINE L2 2924 2961 -311 291 325 100 12 chr1 203424962 203425122 -39239231 + L2 LINE L2 2891 3064 -208 317 260 169 26 chr1 203426256 203426410 -39237943 + MIR3 SINE MIR 4 179 -29 312 234 0 0 chr1 203427004 203427098 -39237255 + (TATATG)n Simple_repeat Simple_repeat 1 94 0 234 183 28 42 chr1 203428215 203428286 -39236067 + T-rich Low_complexity Low_complexity 6 75 0 247 221 32 95 chr1 203428336 203428359 -39235994 + MIR3 SINE MIR 112 135 -73 2154 159 21 40 chr1 203428359 203428731 -39235622 + MLT1A1 LTR MaLR 1 365 0 247 221 32 95 chr1 203428731 203428802 -39235551 + MIR3 SINE MIR 135 200 -8 1141 211 9 5 chr1 203428948 203429161 -39235192 + AluJo SINE Alu 1 214 -98 1152 201 60 161 chr1 203429166 203429334 -39235019 + LTR8A LTR ERV1 150 333 -394 1857 158 10 10 chr1 203429334 203429637 -39234716 - AluSx SINE Alu -9 303 1 1152 201 60 161 chr1 203429637 203430111 -39234242 + LTR8A LTR ERV1 333 727 0 366 216 10 49 chr1 203430625 203430723 -39233630 - MER34 LTR ERV1 0 542 449 3464 148 7 18 chr1 203430723 203431278 -39233075 - MER34C LTR ERV1 0 585 37 1764 210 40 48 chr1 203431277 203431754 -39232599 - MER34B LTR ERV1 -88 477 5 * 1196 236 94 93 chr1 203432206 203432800 -39231553 + MLT1G1 LTR MaLR 1 595 0 333 311 198 0 chr1 203432831 203432998 -39231355 - MIR SINE MIR -56 206 7 2244 95 7 0 chr1 203433074 203433368 -39230985 + AluY SINE Alu 1 296 -15 2331 109 7 0 chr1 203433429 203433732 -39230621 - AluSx SINE Alu -7 305 1 294 271 63 12 chr1 203433732 203433880 -39230473 + MIR SINE MIR 40 262 0 1849 328 40 20 chr1 203433899 203434557 -39229796 + MER115 DNA AcHobo 13 683 -10 506 232 116 19 chr1 203434980 203435096 -39229257 - MLT1I LTR MaLR 0 409 273 1920 202 89 14 chr1 203435096 203435521 -39228832 - MSTB2 LTR MaLR 0 457 1 506 232 116 19 chr1 203435521 203435559 -39228794 - MLT1I LTR MaLR -136 273 240 1392 182 107 10 chr1 203435599 203435890 -39228463 + MLT1A1 LTR MaLR 1 319 -46 336 282 129 0 chr1 203435912 203436036 -39228317 - MLT1I LTR MaLR -207 202 63 1332 238 24 90 chr1 203436360 203436940 -39227413 - MER34 LTR ERV1 0 542 1 1759 180 49 3 chr1 203437104 203437432 -39226921 - MLT1A1 LTR MaLR 0 365 23 1534 213 64 13 chr1 203437617 203438089 -39226264 + MER54B LTR ERVL 99 793 0 4157 226 113 64 chr1 203438111 203439353 -39225000 - MLT1A1-int LTR MaLR -13 1722 421 1002 155 46 16 chr1 203439353 203439547 -39224806 + AluJo SINE Alu 101 300 -12 2361 171 5 18 chr1 203439550 203439984 -39224369 - MLT1A1-int LTR MaLR -1306 429 2 1912 170 30 46 chr1 203439986 203440034 -39224319 - MLT1A1 LTR MaLR 0 365 318 2163 166 39 16 chr1 203440034 203440474 -39223879 - LTR7 LTR ERV1 0 450 1 1912 170 30 46 chr1 203440474 203440796 -39223557 - MLT1A1 LTR MaLR -47 318 1 285 302 24 6 chr1 203440799 203440909 -39223444 - MIR SINE MIR -64 144 35 217 287 83 0 chr1 203441976 203442085 -39222268 + MIR SINE MIR 33 150 -58 433 229 56 49 chr1 203442164 203442308 -39222045 - MIR SINE MIR -50 212 68 4623 143 14 4 chr1 203442394 203443098 -39221255 + MER50 LTR ERV1 1 711 -23 654 296 136 0 chr1 203443098 203443318 -39221035 - MIR SINE MIR 0 262 13 2269 119 3 0 chr1 203443507 203443810 -39220543 + AluSx SINE Alu 1 304 -8 192 348 130 0 chr1 203444205 203444297 -39220056 + L2 LINE L2 3154 3257 -15 367 330 51 17 chr1 203444729 203444905 -39219448 + L3 LINE CR1 1282 1463 -114 271 318 0 0 chr1 203444943 203445009 -39219344 - L2 LINE L2 -2 3311 3246 185 326 0 0 chr1 203445083 203445126 -39219227 + L3 LINE CR1 1514 1556 -21 195 114 0 0 chr1 203446109 203446144 -39218209 + (CA)n Simple_repeat Simple_repeat 2 36 0 281 306 261 15 chr1 203446736 203446870 -39217483 + MER91A DNA MER1_type 20 186 -10 333 311 74 38 chr1 203447068 203447236 -39217117 + MIR SINE MIR 20 191 -64 222 293 190 0 chr1 203448341 203448457 -39215896 - MIR SINE MIR -13 249 112 764 272 158 36 chr1 203448509 203449061 -39215292 - L2 LINE L2 0 3313 2685 209 344 47 23 chr1 203449924 203450052 -39214301 - MIR SINE MIR -58 150 20 473 328 16 21 chr1 203450685 203450874 -39213479 - MER5A DNA MER1_type 0 189 2 405 309 114 57 chr1 203451331 203451700 -39212653 - L2 LINE L2 -2578 736 347 * 660 273 42 58 chr1 203451693 203451953 -39212400 + MIR SINE MIR 7 262 0 306 156 211 33 chr1 203452012 203452102 -39212251 + MLT1J1 LTR MaLR 3 108 -338 340 358 9 0 chr1 203452664 203452773 -39211580 - L2 LINE L2 0 3272 3163 386 298 161 6 chr1 203453260 203453421 -39210932 + MER5A DNA MER1_type 4 189 0 262 236 18 0 chr1 203453490 203453545 -39210808 - L2 LINE L2 -25 3247 3192 313 250 68 0 chr1 203453931 203454019 -39210334 + MIR3 SINE MIR 65 158 -50 1001 245 101 72 chr1 203454214 203454473 -39209880 + LTR48B LTR ERV1 1 251 -393 2099 151 51 11 chr1 203454473 203454824 -39209529 + MER47A DNA MER2_type 2 366 0 1001 245 101 72 chr1 203454824 203455159 -39209194 + LTR48B LTR ERV1 251 644 0 1889 216 61 11 chr1 203455848 203456293 -39208060 + MLT1C LTR MaLR 1 467 0 213 196 0 0 chr1 203456497 203456543 -39207810 + GA-rich Low_complexity Low_complexity 2 47 0 514 277 0 0 chr1 203456840 203456952 -39207401 + MER81 DNA DNA 1 112 -2 430 304 43 14 chr1 203458911 203459049 -39205304 - MER5A DNA MER1_type -18 171 30 421 328 23 0 chr1 203459077 203459205 -39205148 - MIR3 SINE MIR -41 167 37 583 285 104 22 chr1 203459221 203459463 -39204890 - MIR SINE MIR -3 259 3 1686 195 116 31 chr1 203459933 203460377 -39203976 - MLT1F1 LTR MaLR 0 567 69 476 122 195 0 chr1 203460378 203460460 -39203893 + MER4A LTR ERV1 1 98 -566 1686 133 8 72 chr1 203460460 203460828 -39203525 + MER4A LTR ERV1 261 663 -1 475 361 23 9 chr1 203461158 203461377 -39202976 - L2 LINE L2 -202 3070 2849 378 0 0 0 chr1 203461793 203461835 -39202518 + (CA)n Simple_repeat Simple_repeat 1 42 0 1071 267 62 17 chr1 203461953 203462309 -39202044 + HAL1 LINE L1 12 383 -2124 2162 273 60 61 chr1 203462700 203463515 -39200838 + HAL1 LINE L1 373 1188 -1319 1700 156 147 6 chr1 203463515 203463835 -39200518 - MLT1A1 LTR MaLR 0 365 1 2162 273 60 61 chr1 203463835 203464091 -39200262 + HAL1 LINE L1 1188 1443 -1064 783 201 15 0 chr1 203464109 203464243 -39200110 - FLAM_A SINE Alu 0 142 7 785 208 38 47 chr1 203464243 203464455 -39199898 + HAL1 LINE L1 1492 1701 -806 1057 194 63 25 chr1 203464553 203464803 -39199550 - Charlie1a DNA MER1_type -1306 1455 1189 1750 177 3 19 chr1 203464803 203465114 -39199239 - AluJb SINE Alu -6 306 1 1057 194 63 25 chr1 203465114 203465182 -39199171 - Charlie1a DNA MER1_type -1572 1189 1125 4387 142 13 16 chr1 203465184 203465929 -39198424 - L1MA4 LINE L1 -110 7211 6469 11723 194 40 28 chr1 203465937 203466156 -39198197 - L1MA4 LINE L1 -1616 5551 5336 2623 150 43 0 chr1 203466156 203466570 -39197783 - MSTB1 LTR MaLR 0 432 1 11723 194 40 28 chr1 203466570 203467451 -39196902 - L1MA4 LINE L1 -1831 5336 4467 2422 66 0 34 chr1 203467451 203467771 -39196582 - AluY SINE Alu -2 309 1 11723 194 40 28 chr1 203467771 203471827 -39192526 - L1MA4 LINE L1 -2700 4467 11 4561 199 111 7 chr1 203471831 203472865 -39191488 - Charlie1a DNA MER1_type -313 1142 1 783 213 24 6 chr1 203472865 203473021 -39191332 + MER105 DNA DNA 46 204 0 333 145 121 36 chr1 203473369 203473452 -39190901 + MIR SINE MIR 51 140 -122 28 48 0 0 chr1 203473463 203473505 -39190848 + AT_rich Low_complexity Low_complexity 1 42 0 348 311 138 5 chr1 203475629 203475825 -39188528 - MIR SINE MIR -1 261 40 339 280 0 17 chr1 203475964 203476082 -39188271 - MIR SINE MIR -2 260 145 285 271 0 0 chr1 203476075 203476145 -39188208 + L2 LINE L2 3244 3313 0 * 216 213 0 0 chr1 203476143 203476190 -39188163 - MIR SINE MIR -115 147 101 * 1606 122 107 30 chr1 203476195 203476465 -39187888 + AluJo SINE Alu 14 304 -8 3062 33 16 0 chr1 203476465 203476828 -39187525 + L1PA4 LINE L1 5784 6152 -3 701 209 44 13 chr1 203478000 203478094 -39186259 + MER63 DNA MER1_type 900 1002 -60 2342 87 0 10 chr1 203478094 203478392 -39185961 + AluSg SINE Alu 1 295 -15 701 209 44 13 chr1 203478392 203478455 -39185898 + MER63 DNA MER1_type 1002 1062 0 227 276 109 52 chr1 203478487 203478584 -39185769 + L2 LINE L2 2569 2659 -655 2489 132 81 2 chr1 203478584 203478979 -39185374 + MSTB LTR MaLR 1 426 0 227 276 109 52 chr1 203478979 203479055 -39185298 + L2 LINE L2 2659 2752 -562 540 286 79 5 chr1 203479162 203479365 -39184988 + MIR SINE MIR 30 247 -15 4780 146 33 32 chr1 203479632 203480530 -39183823 + L1MB7 LINE L1 5286 6184 0 342 0 0 0 chr1 203480928 203480966 -39183387 + (TG)n Simple_repeat Simple_repeat 2 39 0 276 336 22 22 chr1 203482781 203482915 -39181438 - MIR3 SINE MIR -62 146 13 296 48 24 0 chr1 203483191 203483233 -39181120 + (TC)n Simple_repeat Simple_repeat 1 43 0 330 320 0 0 chr1 203483829 203483904 -39180449 - MER81 DNA DNA -28 86 12 197 302 0 0 chr1 203484312 203484375 -39179978 - L2 LINE L2 -1458 1856 1794 269 368 56 0 chr1 203484502 203484646 -39179707 - MIR3 SINE MIR -22 186 35 588 318 0 0 chr1 203484871 203485041 -39179312 - MER117 DNA MER1_type -17 180 11 673 269 9 37 chr1 203486504 203486720 -39177633 + MIR SINE MIR 14 223 -39 2281 173 62 7 chr1 203486853 203487286 -39177067 + MSTB2 LTR MaLR 1 457 0 6776 208 44 53 chr1 203487286 203488947 -39175406 + MSTB2-int LTR MaLR 1 1646 -5 2403 197 34 0 chr1 203488985 203489427 -39174926 + MSTB2 LTR MaLR 1 457 0 896 276 29 41 chr1 203489531 203489846 -39174507 + MLT1I LTR MaLR 81 391 -18 181 156 0 0 chr1 203489864 203489896 -39174457 + L2 LINE L2 3241 3272 0 700 248 139 0 chr1 203490684 203490886 -39173467 - MER102a DNA MER1_type -27 303 74 201 171 0 0 chr1 203491386 203491421 -39172932 + A-rich Low_complexity Low_complexity 1 35 0 323 227 40 0 chr1 203491965 203492040 -39172313 + L2 LINE L2 3191 3268 -4 657 151 25 13 chr1 203492105 203492264 -39172089 + CT-rich Low_complexity Low_complexity 4 164 0 4306 129 33 25 chr1 203492603 203493201 -39171152 + L1MA4 LINE L1 5533 6140 -160 1380 176 130 0 chr1 203493201 203493463 -39170890 + AluJb SINE Alu 2 297 -15 4306 129 33 25 chr1 203493463 203493622 -39170731 + L1MA4 LINE L1 6140 6296 -4 299 323 10 0 chr1 203493692 203493791 -39170562 - L2 LINE L2 -248 3024 2925 477 288 113 12 chr1 203493995 203494321 -39170032 + L2 LINE L2 2304 2662 -652 304 356 34 15 chr1 203494425 203494692 -39169661 + L2 LINE L2 2827 3098 -174 325 290 148 23 chr1 203495039 203495256 -39169097 + MIR SINE MIR 13 256 -6 604 217 111 6 chr1 203495513 203495693 -39168660 - MIR SINE MIR -15 247 49 345 316 77 13 chr1 203496133 203496288 -39168065 - L2 LINE L2 -6 3266 3102 338 264 0 26 chr1 203497766 203498109 -39166244 + (CA)n Simple_repeat Simple_repeat 1 334 0 1825 154 10 32 chr1 203498880 203499192 -39165161 - AluJo SINE Alu -7 305 1 191 296 136 0 chr1 203499206 203499287 -39165066 + L2 LINE L2 3219 3310 -3 226 291 118 18 chr1 203499415 203499525 -39164828 - L2 LINE L2 0 3313 3193 1136 240 46 28 chr1 203501378 203501703 -39162650 - MLT1C LTR MaLR -31 436 106 443 136 107 68 chr1 203501740 203501843 -39162510 - MLT1C LTR MaLR -355 112 6 267 303 15 15 chr1 203501891 203502023 -39162330 + GA-rich Low_complexity Low_complexity 1 132 0 270 0 0 0 chr1 203502682 203502712 -39161641 + (TG)n Simple_repeat Simple_repeat 2 31 0 243 333 104 16 chr1 203504132 203504315 -39160038 + LTR33A LTR ERVL 23 221 -302 450 268 84 22 chr1 203504370 203504549 -39159804 + LTR33A LTR ERVL 315 504 -19 405 245 142 56 chr1 203504566 203504799 -39159554 - LTR67 LTR ERVL -42 515 263 272 304 33 105 chr1 203504827 203505008 -39159345 - LTR67 LTR ERVL -384 173 6 287 185 0 31 chr1 203505680 203505745 -39158608 + MIR SINE MIR 33 95 -113 242 232 0 0 chr1 203505877 203505933 -39158420 - MER5A DNA MER1_type -133 56 1 210 188 158 0 chr1 203507827 203507883 -39156470 + MIR SINE MIR 42 105 -103 330 315 75 20 chr1 203510117 203510317 -39154036 - MIR SINE MIR -6 256 46 2026 201 31 24 chr1 203511452 203511910 -39152443 + MLT1C LTR MaLR 7 467 0 752 254 132 36 chr1 203511959 203512452 -39151901 + L1ME4a LINE L1 5353 5892 -229 399 98 0 0 chr1 203512463 203512524 -39151829 + (TG)n Simple_repeat Simple_repeat 2 62 0 265 320 129 28 chr1 203513156 203513334 -39151019 - MIR3 SINE MIR -8 200 5 180 0 0 0 chr1 203514047 203514067 -39150286 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 542 133 20 0 chr1 203514067 203514165 -39150188 + CT-rich Low_complexity Low_complexity 1 100 0 1668 176 33 23 chr1 203514169 203514476 -39149877 - AluJo SINE Alu -2 310 1 1183 262 119 22 chr1 203515146 203515598 -39148755 - MLT1G1 LTR MaLR -23 572 1 1180 76 0 0 chr1 203515605 203515749 -39148604 + AluSg/x SINE Alu 152 295 -14 253 374 39 36 chr1 203515862 203516199 -39148154 - L3 LINE CR1 -233 1344 1007 383 289 42 13 chr1 203517046 203517203 -39147150 + MIR SINE MIR 18 178 -64 1297 209 35 4 chr1 203517228 203517487 -39146866 - MER58 DNA MER1_type -74 267 1 217 343 37 0 chr1 203517612 203517720 -39146633 - L2 LINE L2 -218 3054 2943 568 308 54 4 chr1 203517728 203517968 -39146385 - MIR SINE MIR 0 262 11 371 283 0 42 chr1 203519060 203519180 -39145173 + MIR SINE MIR 20 134 -74 271 360 35 9 chr1 203519203 203519317 -39145036 - L2 LINE L2 -35 3237 3121 371 274 62 67 chr1 203519360 203519539 -39144814 - MER5B DNA MER1_type 0 178 1 417 267 167 0 chr1 203520114 203520264 -39144089 + MER96 DNA MER1_type 1 175 0 2542 119 0 3 chr1 203520581 203520943 -39143410 - MER46B DNA MER2_type 0 236 1 286 299 156 38 chr1 203520996 203521310 -39143043 - L2 LINE L2 -352 2962 2612 228 315 25 64 chr1 203521886 203522089 -39142264 + L2 LINE L2 2551 2745 -569 287 298 83 86 chr1 203522194 203522268 -39142085 + L2 LINE L2 2889 2962 -310 1618 174 19 9 chr1 203522268 203522589 -39141764 - MER33 DNA MER1_type 0 324 1 287 298 83 86 chr1 203522589 203522712 -39141641 + L2 LINE L2 2962 3084 -188 1216 182 154 9 chr1 203522712 203523031 -39141322 - MLT1A1 LTR MaLR 0 365 1 287 298 83 86 chr1 203523031 203523168 -39141185 + L2 LINE L2 3084 3223 -49 201 234 0 0 chr1 203523494 203523558 -39140795 + (CA)n Simple_repeat Simple_repeat 1 64 0 230 219 41 14 chr1 203523574 203523647 -39140706 - MIR SINE MIR -86 122 48 390 315 0 6 chr1 203524206 203524387 -39139966 + (TG)n Simple_repeat Simple_repeat 1 180 0 6377 205 80 50 chr1 203524510 203526073 -39138280 + Charlie2a DNA MER1_type 165 1827 -1035 2132 95 13 13 chr1 203526073 203526377 -39137976 - AluSc SINE Alu -5 304 1 6377 205 80 50 chr1 203526377 203527178 -39137175 + Charlie2a DNA MER1_type 1827 2602 -260 818 145 0 28 chr1 203527179 203527324 -39137029 + FLAM_C SINE Alu 1 141 -2 798 231 86 12 chr1 203527333 203527588 -39136765 + Charlie2a DNA MER1_type 2589 2862 0 2175 103 0 3 chr1 203527690 203527990 -39136363 - AluSg SINE Alu -11 299 1 232 289 0 0 chr1 203528186 203528231 -39136122 - L2 LINE L2 -19 3253 3209 1930 151 0 0 chr1 203528275 203528579 -39135774 + AluJb SINE Alu 3 306 -6 344 311 192 0 chr1 203528607 203528758 -39135595 - MIR SINE MIR -17 245 66 180 0 0 0 chr1 203529899 203529919 -39134434 + (TTG)n Simple_repeat Simple_repeat 2 21 0 193 319 29 14 chr1 203530731 203530800 -39133553 + L2 LINE L2 3117 3186 -86 210 236 0 0 chr1 203530836 203530891 -39133462 + GA-rich Low_complexity Low_complexity 2 56 0 208 311 14 0 chr1 203531518 203531592 -39132761 + GA-rich Low_complexity Low_complexity 3 77 0 2091 124 3 0 chr1 203531968 203532267 -39132086 - AluSx SINE Alu -6 306 7 207 0 0 0 chr1 203532527 203532550 -39131803 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 415 45 30 0 chr1 203533030 203533096 -39131257 + (TC)n Simple_repeat Simple_repeat 1 68 0 268 111 44 22 chr1 203533110 203533155 -39131198 + MER5A DNA MER1_type 10 55 -134 185 296 87 52 chr1 203534071 203534186 -39130167 + L2 LINE L2 3096 3214 -58 283 247 0 65 chr1 203535041 203535118 -39129235 + MIR SINE MIR 79 150 -112 2224 151 5 27 chr1 203535302 203535674 -39128679 - THE1B LTR MaLR 0 364 1 536 210 132 12 chr1 203535866 203536033 -39128320 - MER5A DNA MER1_type -2 187 1 729 232 62 111 chr1 203536052 203536393 -39127960 - MLT1I LTR MaLR -39 370 47 1696 244 37 16 chr1 203536425 203536859 -39127494 + LTR47B LTR ERVL 1 443 0 225 0 0 0 chr1 203536980 203537005 -39127348 + (ATG)n Simple_repeat Simple_repeat 3 27 0 1141 236 17 0 chr1 203537010 203537251 -39127102 - MIR SINE MIR -10 252 8 279 0 0 0 chr1 203538456 203538487 -39125866 + (CA)n Simple_repeat Simple_repeat 1 31 0 2853 142 8 23 chr1 203539097 203539569 -39124784 - MLT1C LTR MaLR 0 467 3 491 0 17 0 chr1 203539675 203539734 -39124619 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 1398 121 5 0 chr1 203539737 203539935 -39124418 - AluSg/x SINE Alu -31 281 83 230 344 130 25 chr1 203539995 203540280 -39124073 - L2 LINE L2 -640 2674 2360 182 262 0 0 chr1 203540371 203540413 -39123940 - L2 LINE L2 -956 2358 2317 191 300 0 0 chr1 203540426 203540466 -39123887 - L2 LINE L2 -94 3219 3180 281 250 60 69 chr1 203540517 203540633 -39123720 + MER46C DNA MER2_type 5 119 -219 333 0 0 0 chr1 203540958 203540995 -39123358 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1666 170 7 3 chr1 203540997 203541286 -39123067 - AluSx SINE Alu -22 290 1 2247 70 10 13 chr1 203541545 203541857 -39122496 + AluY SINE Alu 1 311 0 285 379 38 0 chr1 203542744 203542876 -39121477 - L2 LINE L2 -218 3054 2918 230 264 200 0 chr1 203544621 203544731 -39119622 - MIR SINE MIR -25 237 106 319 258 244 10 chr1 203545571 203545712 -39118641 - MIR SINE MIR -42 166 30 2319 78 75 29 chr1 203546688 203547036 -39117317 + THE1B LTR MaLR 1 364 0 255 332 47 32 chr1 203547721 203547931 -39116422 + L2 LINE L2 2793 3010 -262 181 200 0 0 chr1 203548529 203548564 -39115789 + L2 LINE L2 3270 3304 -9 298 328 44 59 chr1 203549213 203549417 -39114936 + L3 LINE CR1 1336 1536 -41 184 200 0 25 chr1 203549449 203549489 -39114864 - MIR SINE MIR 0 262 224 1984 182 43 3 chr1 203550147 203550498 -39113855 - MLT1A1 LTR MaLR 0 365 1 847 267 61 4 chr1 203550509 203550756 -39113597 - MIR SINE MIR -1 261 1 204 135 0 0 chr1 203551936 203551973 -39112380 + (CA)n Simple_repeat Simple_repeat 1 37 0 292 321 56 41 chr1 203553393 203553589 -39110764 - MIR SINE MIR -56 206 8 428 286 99 29 chr1 203553931 203554102 -39110251 + MIR SINE MIR 41 223 -39 200 225 0 0 chr1 203555195 203555235 -39109118 - MIR SINE MIR -109 153 114 495 140 129 0 chr1 203555911 203556004 -39108349 + MER103 DNA DNA 17 121 -45 305 319 28 57 chr1 203556061 203556202 -39108151 - MIR3 SINE MIR -27 181 45 726 60 0 0 chr1 203556793 203556893 -39107460 + (GATTG)n Simple_repeat Simple_repeat 3 102 0 369 288 108 40 chr1 203557476 203557726 -39106627 - L2 LINE L2 -5 3308 3042 264 346 0 20 chr1 203558069 203558170 -39106183 - L2 LINE L2 0 3272 3174 180 256 0 0 chr1 203558294 203558337 -39106016 + L2 LINE L2 3230 3272 0 379 241 49 108 chr1 203560429 203560538 -39103815 + MER63A DNA MER1_type 7 100 -1588 1563 190 10 3 chr1 203560538 203560838 -39103515 + AluJo SINE Alu 1 302 -10 379 241 49 108 chr1 203560838 203560931 -39103422 + MER63A DNA MER1_type 100 197 -13 22 0 0 0 chr1 203561464 203561486 -39102867 + AT_rich Low_complexity Low_complexity 1 22 0 576 244 114 42 chr1 203561516 203561709 -39102644 - MIR SINE MIR -55 207 1 779 293 136 28 chr1 203562003 203562851 -39101502 + L2 LINE L2 2370 3313 0 887 86 0 0 chr1 203563771 203563887 -39100466 + AluSc SINE Alu 157 272 -37 180 0 0 0 chr1 203563891 203563911 -39100442 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 406 267 107 42 chr1 203565002 203565124 -39099229 - L1MC4 LINE L1 0 8042 7929 428 0 19 0 chr1 203565124 203565176 -39099177 + (CA)n Simple_repeat Simple_repeat 1 53 0 406 267 107 42 chr1 203565176 203565315 -39099038 - L1MC4 LINE L1 -113 7929 7764 206 259 86 52 chr1 203565329 203565445 -39098908 - MER5B DNA MER1_type -35 143 24 469 263 31 31 chr1 203565629 203565789 -39098564 - MER91B DNA MER1_type -30 160 1 237 194 39 155 chr1 203565844 203565947 -39098406 + L2 LINE L2 3180 3270 -2 252 250 0 0 chr1 203566043 203566095 -39098258 + L2 LINE L2 3262 3313 0 687 287 100 13 chr1 203566372 203566602 -39097751 - MIR SINE MIR 0 262 13 233 152 0 0 chr1 203567241 203567287 -39097066 - L1MC4a LINE L1 0 7808 7763 688 204 0 66 chr1 203567296 203567397 -39096956 + FLAM_C SINE Alu 2 91 -221 2183 129 21 47 chr1 203567397 203567778 -39096575 - THE1C LTR MaLR -4 371 1 688 204 0 66 chr1 203567778 203567828 -39096525 + FLAM_C SINE Alu 91 143 -169 740 294 85 61 chr1 203567829 203568415 -39095938 - L1MC4 LINE L1 -40 8002 7403 584 370 71 32 chr1 203569451 203570016 -39094337 - L2 LINE L2 -464 2850 2264 198 291 233 0 chr1 203570047 203570133 -39094220 + L2 LINE L2 3208 3313 0 472 332 118 4 chr1 203570234 203570463 -39093890 - MIR SINE MIR -4 258 4 1218 179 5 18 chr1 203570606 203570824 -39093529 - MER20 DNA MER1_type -2 217 3 1970 129 93 6 chr1 203570967 203571299 -39093054 + MER46B DNA MER2_type 1 236 0 211 317 73 12 chr1 203572250 203572332 -39092021 + L3 LINE CR1 1332 1418 -159 261 183 0 0 chr1 203572499 203572559 -39091794 + (CA)n Simple_repeat Simple_repeat 2 61 0 741 328 94 5 chr1 203573091 203573472 -39090881 + L3 LINE CR1 1136 1550 -27 261 241 35 0 chr1 203574225 203574283 -39090070 + MIR3 SINE MIR 133 192 -16 262 246 0 16 chr1 203574421 203574482 -39089871 - L2 LINE L2 -8 3305 3246 215 179 18 54 chr1 203575888 203575944 -39088409 - L2 LINE L2 -87 3185 3132 189 275 0 0 chr1 203576168 203576208 -39088145 - L2 LINE L2 -80 3192 3153 267 103 0 0 chr1 203576546 203576585 -39087768 + (CA)n Simple_repeat Simple_repeat 2 40 0 399 284 92 50 chr1 203577005 203577223 -39087130 - L2 LINE L2 0 3313 3087 213 391 83 26 chr1 203578933 203579355 -39084998 + L2 LINE L2 2806 3251 -21 1192 217 5 5 chr1 203579506 203579723 -39084630 - MER58A DNA MER1_type -3 221 5 276 300 74 40 chr1 203580823 203581018 -39083335 + MIR SINE MIR 35 221 -41 272 233 47 15 chr1 203582558 203582688 -39081665 - MIR SINE MIR -27 235 7 494 250 8 24 chr1 203582693 203582817 -39081536 + MIR SINE MIR 46 167 -95 316 339 46 0 chr1 203583018 203583127 -39081226 + MIR3 SINE MIR 41 154 -54 260 200 0 46 chr1 203585638 203585703 -39078650 + MIR3 SINE MIR 128 189 -19 989 231 46 40 chr1 203587602 203587905 -39076448 + L2 LINE L2 3009 3313 0 262 298 96 0 chr1 203587921 203588015 -39076338 + MIR SINE MIR 51 153 -109 553 335 84 40 chr1 203588646 203588992 -39075361 - L2 LINE L2 -10 3262 2902 803 270 42 0 chr1 203589061 203589276 -39075077 + MIR SINE MIR 36 259 -3 307 250 133 17 chr1 203590073 203590193 -39074160 - MIR SINE MIR -46 216 83 712 281 203 13 chr1 203590277 203590852 -39073501 - L2 LINE L2 0 3313 2625 218 246 164 0 chr1 203591321 203591382 -39072971 + MIR SINE MIR 76 146 -116 235 364 91 0 chr1 203593203 203593346 -39071007 + L2 LINE L2 3116 3271 -1 779 77 0 17 chr1 203593354 203593471 -39070882 + (GGAA)n Simple_repeat Simple_repeat 4 118 0 350 260 102 45 chr1 203593832 203594046 -39070307 + MIR SINE MIR 13 237 -25 609 267 12 6 chr1 203594656 203594817 -39069536 - MIR SINE MIR 0 262 101 374 264 57 29 chr1 203594805 203594945 -39069408 - MIR3 SINE MIR -41 167 24 * 704 268 28 59 chr1 203596710 203596889 -39067464 + MIR SINE MIR 17 200 -62 2075 94 14 0 chr1 203596889 203597177 -39067176 + AluSq SINE Alu 1 292 -21 186 43 0 0 chr1 203597177 203597200 -39067153 + (GA)n Simple_repeat Simple_repeat 2 24 0 704 268 28 59 chr1 203597200 203597273 -39067080 + MIR SINE MIR 198 262 0 605 303 53 5 chr1 203597269 203597477 -39066876 - MIR SINE MIR -9 253 36 * 278 248 154 17 chr1 203597693 203597810 -39066543 - L2 LINE L2 -3 3269 3137 193 118 0 29 chr1 203598012 203598046 -39066307 - MIR SINE MIR -83 125 93 249 291 29 39 chr1 203598515 203598618 -39065735 - MIR SINE MIR -73 135 34 188 396 45 13 chr1 203599288 203599442 -39064911 + L2 LINE L2 2994 3152 -120 257 340 56 6 chr1 203599793 203599955 -39064398 + L2 LINE L2 2883 3052 -220 543 253 108 13 chr1 203599970 203600128 -39064225 + MER5B DNA MER1_type 4 176 -2 221 383 16 47 chr1 203600458 203600586 -39063767 - MER5A DNA MER1_type -2 187 64 363 250 209 7 chr1 203600649 203600797 -39063556 + MER5B DNA MER1_type 1 178 0 440 18 18 0 chr1 203603391 203603448 -39060905 + (TC)n Simple_repeat Simple_repeat 1 58 0 216 254 0 17 chr1 203603627 203603686 -39060667 + L2 LINE L2 2183 2240 -1074 2014 127 0 0 chr1 203603857 203604176 -39060177 - AluSx SINE Alu 0 319 1 345 76 8 0 chr1 203604181 203604233 -39060120 - AluSq/x SINE Alu -175 127 83 433 308 111 49 chr1 203604233 203604670 -39059683 + L2 LINE L2 2692 3223 -90 860 212 31 59 chr1 203604670 203604892 -39059461 - MER20 DNA MER1_type 0 219 4 433 308 111 49 chr1 203604892 203604986 -39059367 + L2 LINE L2 3223 3310 -3 288 368 84 53 chr1 203605132 203605491 -39058862 + L2 LINE L2 2901 3270 -2 677 308 40 69 chr1 203605548 203606042 -39058311 + MARNA DNA Mariner 75 554 -32 200 358 25 0 chr1 203607472 203607553 -39056800 - MIR SINE MIR -6 256 174 187 295 16 33 chr1 203607636 203607697 -39056656 + MIR3 SINE MIR 100 159 -49 545 233 33 0 chr1 203607701 203607821 -39056532 - L2 LINE L2 -1 3312 3189 186 94 62 0 chr1 203607827 203607859 -39056494 + MIR3 SINE MIR 157 190 -18 393 176 0 0 chr1 203608083 203608157 -39056196 + (CA)n Simple_repeat Simple_repeat 1 74 0 2320 95 0 0 chr1 203608745 203609051 -39055302 + AluSg SINE Alu 5 310 0 678 201 22 124 chr1 203609060 203609273 -39055080 + L2 LINE L2 3069 3250 -63 2370 67 0 16 chr1 203609273 203609588 -39054765 + AluY SINE Alu 1 310 -1 678 201 22 124 chr1 203609588 203609647 -39054706 + L2 LINE L2 3250 3313 0 412 296 45 0 chr1 203609783 203609915 -39054438 - MIR SINE MIR -28 234 97 508 253 93 46 chr1 203610567 203610794 -39053559 + L1ME4a LINE L1 5779 5994 -127 433 156 39 0 chr1 203610794 203610871 -39053482 + MER116 DNA Mariner 1 80 0 508 253 93 46 chr1 203610871 203610916 -39053437 + L1ME4a LINE L1 5994 6035 -86 1991 121 0 25 chr1 203610916 203611253 -39053100 - AluSx SINE Alu 0 312 1 508 253 93 46 chr1 203611253 203611303 -39053050 + L1ME4a LINE L1 6035 6117 -4 489 267 44 80 chr1 203612847 203613072 -39051281 - MIR SINE MIR -26 236 20 2105 128 3 0 chr1 203613908 203614212 -39050141 + AluSx SINE Alu 1 305 -7 357 366 12 19 chr1 203614826 203614987 -39049366 - MIR3 SINE MIR -20 188 29 180 277 168 42 chr1 203615225 203615344 -39049009 - MIR SINE MIR -17 245 112 470 275 22 7 chr1 203616694 203616832 -39047521 - MIR3 SINE MIR -12 196 57 41 0 0 0 chr1 203617321 203617362 -39046991 + AT_rich Low_complexity Low_complexity 1 41 0 229 361 19 51 chr1 203618222 203618380 -39045973 + L2 LINE L2 3158 3310 -3 216 336 56 9 chr1 203619620 203619727 -39044626 + MIR3 SINE MIR 43 154 -54 266 322 123 0 chr1 203620404 203620550 -39043803 - MIR3 SINE MIR -38 170 7 939 235 148 83 chr1 203623150 203623919 -39040434 + L2 LINE L2 2435 3313 0 763 267 116 4 chr1 203624819 203625044 -39039309 - MIR SINE MIR -4 258 9 2153 118 0 0 chr1 203625162 203625467 -39038886 + AluSx SINE Alu 1 305 -7 263 308 133 0 chr1 203626700 203626791 -39037562 + MIR3 SINE MIR 61 173 -35 479 204 102 42 chr1 203626791 203626958 -39037395 + MER5B DNA MER1_type 2 178 0 263 308 133 0 chr1 203626958 203626986 -39037367 + MIR3 SINE MIR 173 196 -12 542 296 126 0 chr1 203627002 203627201 -39037152 + MIR SINE MIR 4 227 -35 2546 77 0 0 chr1 203627709 203628020 -39036333 + AluY SINE Alu 1 311 0 214 171 0 0 chr1 203628698 203628733 -39035620 + GA-rich Low_complexity Low_complexity 1 35 0 530 183 165 18 chr1 203629082 203629246 -39035107 - MER53 DNA DNA 0 189 2 219 408 10 0 chr1 203629275 203629373 -39034980 - L3 LINE CR1 -405 1172 1074 192 152 0 0 chr1 203629752 203629785 -39034568 - MIR SINE MIR -155 107 75 368 311 26 71 chr1 203629788 203630097 -39034256 - MLT1I LTR MaLR -14 395 101 2270 107 3 0 chr1 203630211 203630509 -39033844 - AluSx SINE Alu -13 299 1 567 234 9 0 chr1 203630862 203630973 -39033380 - MER81 DNA DNA -1 113 2 339 272 27 89 chr1 203631170 203631427 -39032926 - L3 LINE CR1 -554 1023 783 195 171 29 0 chr1 203631947 203631982 -39032371 + L2 LINE L2 3257 3292 -21 299 291 73 33 chr1 203633009 203633160 -39031193 - L2 LINE L2 -2 3311 3155 198 0 0 0 chr1 203633746 203633768 -39030585 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 451 313 80 38 chr1 203633776 203634038 -39030315 - L2 LINE L2 -29 3284 3012 320 300 75 12 chr1 203634321 203634481 -39029872 - L2 LINE L2 -299 2973 2804 437 372 35 6 chr1 203634485 203634657 -39029696 - MER5B DNA MER1_type -1 177 1 749 249 28 14 chr1 203634687 203634900 -39029453 + MIR SINE MIR 1 216 -46 766 327 60 24 chr1 203634958 203635295 -39029058 - L2 LINE L2 -746 2568 2214 933 184 44 29 chr1 203635295 203635501 -39028852 - MER3 DNA MER1_type 0 209 1 766 327 60 24 chr1 203635501 203635545 -39028808 - L2 LINE L2 -1100 2214 2173 349 245 28 19 chr1 203635574 203635680 -39028673 - MER5B DNA MER1_type -71 107 1 283 329 179 16 chr1 203635764 203636150 -39028203 + L2 LINE L2 2257 2705 -609 290 346 105 22 chr1 203636263 203636721 -39027632 - L2 LINE L2 -42 3230 2736 941 306 110 44 chr1 203636751 203636989 -39027364 - L2 LINE L2 -562 2752 2531 2497 55 0 3 chr1 203636989 203637280 -39027073 - AluY SINE Alu -10 301 12 941 306 110 44 chr1 203637280 203637769 -39026584 - L2 LINE L2 -783 2531 1977 271 298 38 46 chr1 203638186 203638252 -39026101 + L2 LINE L2 3128 3194 -78 2170 125 0 0 chr1 203638252 203638541 -39025812 - AluSc SINE Alu -14 295 7 271 298 38 46 chr1 203638541 203638605 -39025748 + L2 LINE L2 3194 3257 -15 476 235 14 142 chr1 203638718 203638999 -39025354 - MIR SINE MIR 0 262 18 212 0 36 0 chr1 203640167 203640195 -39024158 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 610 256 122 39 chr1 203640234 203640488 -39023865 - L2 LINE L2 0 3313 3039 232 203 17 0 chr1 203640929 203640988 -39023365 + (TTA)n Simple_repeat Simple_repeat 2 61 0 352 272 0 97 chr1 203641293 203641396 -39022957 - MER81 DNA DNA -21 93 1 375 23 0 0 chr1 203643141 203643185 -39021168 + (TC)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr1 203643184 203643213 -39021140 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 221 171 24 0 chr1 203643748 203643789 -39020564 + CT-rich Low_complexity Low_complexity 1 42 0 2089 88 4 4 chr1 203646538 203646799 -39017554 - AluSc SINE Alu -25 284 24 897 209 30 20 chr1 203647241 203647442 -39016911 + MER20 DNA MER1_type 17 219 0 693 318 75 4 chr1 203647567 203647847 -39016506 + L3 LINE CR1 620 919 -658 5779 131 37 32 chr1 203647851 203649162 -39015191 - L1MA6 LINE L1 -4 6296 4977 2068 163 15 6 chr1 203649165 203649503 -39014850 - MER7A DNA MER2_type -5 341 3 1865 142 0 0 chr1 203649506 203649794 -39014559 - L1MA6 LINE L1 -1169 4977 4690 309 285 69 62 chr1 203649794 203649938 -39014415 + L3 LINE CR1 907 1051 -526 506 236 68 77 chr1 203649983 203650203 -39014150 + MIR SINE MIR 45 262 0 711 319 136 19 chr1 203650213 203650646 -39013707 + L3 LINE CR1 1094 1577 0 274 246 0 15 chr1 203652848 203652913 -39011440 + MER89-int LTR ERV1 1228 1291 -5510 428 273 9 9 chr1 203653718 203653828 -39010525 + L2 LINE L2 3162 3271 -1 269 277 21 11 chr1 203654642 203654736 -39009617 + GA-rich Low_complexity Low_complexity 3 97 0 230 244 0 0 chr1 203655057 203655102 -39009251 - L1MD3 LINE L1 -40 7955 7911 482 319 0 12 chr1 203655981 203656141 -39008212 - MIR3 SINE MIR -17 191 34 397 326 72 62 chr1 203656627 203657029 -39007324 + L2 LINE L2 2866 3271 -1 443 237 49 103 chr1 203657194 203657418 -39006935 + HAL1 LINE L1 8 219 -2288 2837 259 91 82 chr1 203657494 203657932 -39006421 + HAL1 LINE L1 426 858 -1649 2142 182 75 0 chr1 203657932 203658334 -39006019 + MSTB1 LTR MaLR 1 432 0 2837 259 91 82 chr1 203658334 203658515 -39005838 + HAL1 LINE L1 858 1036 -1471 1608 178 38 3 chr1 203658515 203658808 -39005545 + AluJo SINE Alu 9 311 -1 2837 259 91 82 chr1 203658808 203658888 -39005465 + HAL1 LINE L1 1036 1114 -1393 2238 111 0 0 chr1 203658888 203659177 -39005176 + AluSq SINE Alu 1 289 -24 2837 259 91 82 chr1 203659177 203660537 -39003816 + HAL1 LINE L1 1114 2507 0 22 0 0 0 chr1 203660542 203660564 -39003789 + AT_rich Low_complexity Low_complexity 1 22 0 1888 150 78 63 chr1 203660745 203661221 -39003132 - MER31A LTR ERV1 0 543 1 262 268 118 31 chr1 203661221 203661348 -39003005 - MER5B DNA MER1_type -40 138 1 303 312 189 6 chr1 203662423 203662740 -39001613 + L2 LINE L2 1978 2352 -962 * 480 281 37 22 chr1 203662721 203662856 -39001497 - L2 LINE L2 0 3272 3136 323 316 148 20 chr1 203663312 203663390 -39000963 - L2 LINE L2 -642 2672 2605 1856 120 64 67 chr1 203663390 203663765 -39000588 + THE1C LTR MaLR 2 375 0 323 316 148 20 chr1 203663765 203663930 -39000423 - L2 LINE L2 -709 2605 2398 2753 195 57 19 chr1 203663941 203664002 -39000351 + L1MB7 LINE L1 5539 5596 -588 2324 92 7 0 chr1 203664002 203664295 -39000058 + AluSc SINE Alu 1 295 -14 2753 195 57 19 chr1 203664295 203664847 -38999506 + L1MB7 LINE L1 5596 6175 -9 468 334 60 29 chr1 203664860 203665207 -38999146 - L2 LINE L2 -958 2356 1999 263 211 0 0 chr1 203666283 203666340 -38998013 - MER53 DNA DNA -7 182 126 665 191 15 8 chr1 203666371 203666502 -38997851 - FLAM_C SINE Alu 0 133 2 587 50 10 30 chr1 203666593 203666692 -38997661 + (TAGA)n Simple_repeat Simple_repeat 3 99 0 248 176 103 0 chr1 203666708 203666776 -38997577 + MER53 DNA DNA 108 182 -7 * 529 99 0 0 chr1 203666759 203666830 -38997523 - MER53 DNA DNA -118 71 1 2283 97 72 0 chr1 203667740 203668071 -38996282 - THE1A LTR MaLR 0 355 1 11514 92 17 3 chr1 203668071 203669630 -38994723 - THE1A-int LTR MaLR 0 1580 1 2850 76 0 0 chr1 203669631 203669985 -38994368 - THE1A LTR MaLR -1 354 1 719 185 258 0 chr1 203670969 203671147 -38993206 + Charlie1 DNA MER1_type 10 233 -2528 629 168 7 77 chr1 203671144 203671287 -38993066 + Charlie1 DNA MER1_type 2626 2758 -3 * 23 0 0 0 chr1 203671857 203671880 -38992473 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 203673846 203673866 -38990487 + (A)n Simple_repeat Simple_repeat 1 20 0 631 251 124 31 chr1 203677939 203678198 -38986155 - MLT1J LTR MaLR -6 505 223 400 258 167 0 chr1 203678225 203678345 -38986008 - MLT1J LTR MaLR -371 140 1 333 0 0 0 chr1 203678411 203678448 -38985905 + (CA)n Simple_repeat Simple_repeat 2 38 0 1171 194 82 71 chr1 203680759 203681099 -38983254 - MER2 DNA MER2_type 0 344 1 556 283 23 37 chr1 203681195 203681242 -38983111 + L1ME4a LINE L1 5569 5615 -528 2167 109 0 3 chr1 203681242 203681535 -38982818 + AluSg SINE Alu 1 292 -18 556 283 23 37 chr1 203681535 203681711 -38982642 + L1ME4a LINE L1 5615 5791 -352 350 233 33 67 chr1 203681750 203681900 -38982453 + L1ME4a LINE L1 5974 6118 -3 2011 166 21 6 chr1 203682038 203682370 -38981983 + MER2 DNA MER2_type 8 344 -1 375 271 39 39 chr1 203682504 203682633 -38981720 - L2 LINE L2 0 3313 3185 357 263 68 8 chr1 203682705 203682838 -38981515 + HsTC2 DNA Tc2 1758 1898 0 183 333 148 0 chr1 203682854 203682962 -38981391 + L2 LINE L2 3149 3272 0 349 304 0 0 chr1 203683079 203683181 -38981172 - MER20 DNA MER1_type 0 219 118 2921 191 118 38 chr1 203683600 203684369 -38979984 + L1MC4 LINE L1 6458 7288 -754 246 61 0 82 chr1 203684376 203684425 -38979928 + L1MB3 LINE L1 5289 5333 -850 * 7386 151 31 15 chr1 203684419 203686047 -38978306 + L1MA4A LINE L1 3999 5817 -486 2122 117 0 49 chr1 203686047 203686372 -38977981 + AluSx SINE Alu 1 309 -3 7386 151 31 15 chr1 203686372 203686866 -38977487 + L1MA4A LINE L1 5817 6302 -1 4510 135 9 80 chr1 203686869 203687227 -38977126 + L1MB3 LINE L1 5321 5703 -480 2207 101 54 0 chr1 203687227 203687523 -38976830 + AluSx SINE Alu 1 312 0 4510 135 9 80 chr1 203687523 203688050 -38976303 + L1MB3 LINE L1 5703 6143 -40 3046 73 23 5 chr1 203688045 203688442 -38975911 - L1PA6 LINE L1 -164 5990 5587 * 1154 81 0 14 chr1 203688442 203688579 -38975774 + L1PA6 LINE L1 6002 6147 -7 2100 196 43 29 chr1 203688599 203688858 -38975495 + L1MC4 LINE L1 7277 7548 -494 508 264 98 26 chr1 203688858 203689051 -38975302 + MER63A DNA MER1_type 1 207 -3 2100 196 43 29 chr1 203689051 203689276 -38975077 + L1MC4 LINE L1 7548 7768 -274 1768 187 65 40 chr1 203689282 203689731 -38974622 + MLT1C LTR MaLR 6 465 -2 533 157 350 83 chr1 203689731 203689948 -38974405 + L1MC4 LINE L1 7768 8042 0 245 351 40 17 chr1 203690819 203690993 -38973360 + L2 LINE L2 2038 2215 -1099 215 298 0 0 chr1 203692559 203692616 -38971737 - MER91 DNA MER1_type -72 124 68 721 222 65 112 chr1 203693389 203693727 -38970626 + MER46C DNA MER2_type 3 324 -14 1950 90 12 0 chr1 203694523 203694778 -38969575 + AluSc SINE Alu 50 307 -2 1263 178 104 52 chr1 203694794 203695081 -38969272 + AluJo SINE Alu 1 302 -10 1118 252 78 38 chr1 203695426 203695875 -38968478 + MLT1C LTR MaLR 1 467 0 295 333 0 40 chr1 203696083 203696182 -38968171 + MIR SINE MIR 3 97 -165 188 135 81 0 chr1 203696202 203696239 -38968114 + MIR SINE MIR 223 262 0 254 288 14 0 chr1 203696835 203696908 -38967445 - MIR SINE MIR 0 262 189 374 301 0 0 chr1 203696935 203697018 -38967335 - MIR SINE MIR -178 84 2 609 275 159 106 chr1 203697040 203697436 -38966917 - MLT1L LTR MaLR -51 563 121 963 196 64 107 chr1 203697475 203697550 -38966803 - MLT1J LTR MaLR -2 509 432 2105 139 0 0 chr1 203697550 203697837 -38966516 + AluSx SINE Alu 1 287 -25 279 0 0 0 chr1 203697837 203697868 -38966485 + (CA)n Simple_repeat Simple_repeat 2 32 0 963 196 64 107 chr1 203697868 203698118 -38966235 - MLT1J LTR MaLR -77 434 197 3258 153 11 2 chr1 203698123 203698660 -38965693 + L1 LINE L1 3656 4197 -1949 474 255 72 102 chr1 203698700 203699104 -38965249 - MLT1J LTR MaLR -102 409 18 264 263 70 9 chr1 203699121 203699235 -38965118 - L1P LINE L1 -1147 4999 4879 2209 271 54 20 chr1 203699271 203700015 -38964338 + L1ME LINE L1 6 774 -5296 2124 118 28 0 chr1 203700192 203700480 -38963873 - AluSx SINE Alu -16 296 1 2219 39 16 0 chr1 203701072 203701329 -38963024 - L1PA5 LINE L1 0 6154 5894 1760 239 75 16 chr1 203701655 203702148 -38962205 + L1MD3 LINE L1 7473 7994 -1 223 250 0 16 chr1 203702202 203702266 -38962087 + GA-rich Low_complexity Low_complexity 2 64 0 31 76 0 0 chr1 203703245 203703311 -38961042 + AT_rich Low_complexity Low_complexity 1 66 0 216 260 29 96 chr1 203703761 203703865 -38960488 - L2 LINE L2 0 3313 3217 1137 276 100 45 chr1 203703865 203704124 -38960229 - LTR33 LTR ERVL 0 521 278 2217 111 0 0 chr1 203704124 203704412 -38959941 + AluSc SINE Alu 1 288 -21 1137 276 100 45 chr1 203704412 203704644 -38959709 - LTR33 LTR ERVL -243 278 3 1448 219 88 3 chr1 203705213 203705657 -38958696 + MER110A LTR ERV1 1 491 0 1828 157 0 27 chr1 203706107 203706450 -38957903 - AluJo SINE Alu 0 335 1 419 254 60 79 chr1 203706677 203706929 -38957424 + L1MC4a LINE L1 5698 5944 -177 1493 242 59 37 chr1 203707073 203707528 -38956825 + MLT1C LTR MaLR 1 465 -2 662 253 64 34 chr1 203707757 203707990 -38956363 + L2 LINE L2 2691 2930 -384 5741 92 12 18 chr1 203708051 203708132 -38956221 + L1PB1 LINE L1 5323 5403 -748 2259 120 3 0 chr1 203708132 203708440 -38955913 + AluSx SINE Alu 1 309 -3 5741 92 12 18 chr1 203708440 203708834 -38955519 + L1PB1 LINE L1 5403 5793 -358 297 0 0 0 chr1 203708834 203708867 -38955486 + (CA)n Simple_repeat Simple_repeat 2 34 0 5741 92 12 18 chr1 203708867 203709224 -38955129 + L1PB1 LINE L1 5793 6151 0 678 250 26 67 chr1 203709235 203709299 -38955054 + L2 LINE L2 3027 3092 -221 1825 169 7 0 chr1 203709299 203709600 -38954753 - AluJb SINE Alu -9 303 1 678 250 26 67 chr1 203709600 203709700 -38954653 + L2 LINE L2 3092 3178 -135 1314 227 77 106 chr1 203709700 203710313 -38954040 - MLT1G1 LTR MaLR 0 595 1 678 250 26 67 chr1 203710313 203710415 -38953938 + L2 LINE L2 3178 3283 -30 918 223 14 51 chr1 203710858 203711073 -38953280 + MER63A DNA MER1_type 1 207 -3 406 268 90 79 chr1 203711419 203711863 -38952490 - MLT1J LTR MaLR -7 504 56 257 224 95 41 chr1 203712477 203712624 -38951729 - Charlie7 DNA MER1_type -29 2583 2429 39 22 0 0 chr1 203714436 203714482 -38949871 + AT_rich Low_complexity Low_complexity 1 46 0 748 163 98 33 chr1 203714650 203714834 -38949519 + L1MA9 LINE L1 5880 6075 -237 3068 138 23 23 chr1 203714835 203715351 -38949002 - MER34 LTR ERV1 0 542 27 788 194 29 23 chr1 203715362 203715521 -38948832 + L1MA9 LINE L1 6073 6235 -77 2243 162 6 0 chr1 203715521 203715867 -38948486 - MER7A DNA MER2_type 0 346 1 788 194 29 23 chr1 203715867 203715882 -38948471 + L1MA9 LINE L1 6235 6248 -64 305 339 65 17 chr1 203716679 203716909 -38947444 + L2 LINE L2 2818 3058 -214 270 260 77 53 chr1 203717468 203717637 -38946716 + L1MC/D LINE L1 5620 5795 -326 303 232 95 11 chr1 203717744 203717839 -38946514 - MIR SINE MIR -21 241 139 716 237 4 59 chr1 203718146 203718373 -38945980 - MIR SINE MIR -46 216 7 26 50 0 0 chr1 203718487 203718527 -38945826 + AT_rich Low_complexity Low_complexity 1 40 0 368 277 100 77 chr1 203718594 203718894 -38945459 + L1ME4a LINE L1 5746 6052 -69 22 70 0 0 chr1 203718907 203718950 -38945403 + AT_rich Low_complexity Low_complexity 1 43 0 2216 96 7 10 chr1 203719619 203719911 -38944442 + AluSx SINE Alu 1 291 -21 1966 111 55 4 chr1 203721153 203721424 -38942929 + AluSx SINE Alu 11 295 -17 330 288 72 45 chr1 203722192 203722567 -38941786 - L1M4 LINE L1 -3092 3054 2670 209 244 236 10 chr1 203722649 203722748 -38941605 + MIR SINE MIR 8 126 -82 2107 102 7 7 chr1 203722927 203723211 -38941142 + AluSq SINE Alu 1 284 -29 1996 119 0 4 chr1 203723211 203723480 -38940873 - AluSx SINE Alu -44 268 1 238 131 82 66 chr1 203726188 203726249 -38938104 - HSMAR1 DNA Mariner -1225 62 1 704 234 140 19 chr1 203726282 203726496 -38937857 - MIR SINE MIR -10 252 13 191 327 106 26 chr1 203728207 203728320 -38936033 - MIR SINE MIR -58 150 29 1593 166 19 32 chr1 203729124 203729437 -38934916 + AluJo SINE Alu 1 309 -3 246 170 0 57 chr1 203729515 203729568 -38934785 - L2 LINE L2 0 3313 3264 342 239 14 0 chr1 203730175 203730246 -38934107 - MIR3 SINE MIR -28 180 109 1503 206 11 40 chr1 203730540 203730894 -38933459 - MLT1A1 LTR MaLR -21 344 1 821 238 12 0 chr1 203732460 203732624 -38931729 - MIR3 SINE MIR -15 193 28 205 377 41 41 chr1 203732619 203732765 -38931588 - L2 LINE L2 -5 3308 3163 * 2227 93 0 7 chr1 203732933 203733235 -38931118 + AluSx SINE Alu 1 300 -12 234 210 230 0 chr1 203733261 203733361 -38930992 - Charlie1 DNA MER1_type -1 2760 2638 1704 158 0 4 chr1 203733365 203733644 -38930709 + AluSx SINE Alu 1 278 -34 420 20 0 0 chr1 203733652 203733701 -38930652 + (GA)n Simple_repeat Simple_repeat 1 49 0 564 15 0 0 chr1 203733701 203733766 -38930587 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 845 188 103 23 chr1 203733783 203733860 -38930493 - Charlie1 DNA MER1_type -137 2624 2555 1745 176 3 3 chr1 203733860 203734162 -38930191 + AluSq SINE Alu 3 304 -9 845 188 103 23 chr1 203734162 203734345 -38930008 - Charlie1 DNA MER1_type -206 2555 2343 282 250 15 29 chr1 203734343 203734411 -38929942 - Charlie1 DNA MER1_type -2690 71 5 * 510 258 81 123 chr1 203734796 203735055 -38929298 - L2 LINE L2 0 3272 3027 1980 153 0 0 chr1 203735055 203735362 -38928991 + AluSx SINE Alu 1 307 -5 510 258 81 123 chr1 203735362 203735412 -38928941 - L2 LINE L2 -245 3027 2976 1560 151 81 4 chr1 203735889 203736161 -38928192 + AluJb SINE Alu 3 295 -17 213 264 0 28 chr1 203738760 203738832 -38925521 + (TATG)n Simple_repeat Simple_repeat 4 73 0 297 280 0 4 chr1 203738843 203739088 -38925265 + (TG)n Simple_repeat Simple_repeat 1 243 0 455 300 0 2 chr1 203739134 203739626 -38924727 + (TG)n Simple_repeat Simple_repeat 1 490 0 505 326 0 0 chr1 203739646 203739821 -38924532 + (TG)n Simple_repeat Simple_repeat 1 175 0 207 268 0 0 chr1 203739902 203739999 -38924354 + (TG)n Simple_repeat Simple_repeat 1 97 0 517 320 6 0 chr1 203740068 203740246 -38924107 + (TG)n Simple_repeat Simple_repeat 2 180 0 409 310 0 0 chr1 203740274 203740577 -38923776 + (TG)n Simple_repeat Simple_repeat 1 303 0 2130 165 37 3 chr1 203740590 203740966 -38923387 - MLT1B LTR MaLR 0 390 2 636 338 99 50 chr1 203742805 203743573 -38920780 - L2 LINE L2 -94 3178 2335 226 227 167 0 chr1 203743740 203743806 -38920547 + L2 LINE L2 3229 3305 -8 817 186 26 6 chr1 203744692 203744848 -38919505 + MIR SINE MIR 104 262 0 966 145 0 0 chr1 203745438 203745590 -38918763 + FRAM SINE Alu 20 171 -5 1996 139 21 75 chr1 203747295 203747684 -38916669 - MLT1B LTR MaLR -22 368 1 208 273 76 15 chr1 203747895 203747961 -38916392 + L3b LINE CR1 1505 1574 -9 240 324 40 0 chr1 203748400 203748474 -38915879 - MIR SINE MIR -111 97 21 224 283 83 25 chr1 203748485 203748605 -38915748 + L3b LINE CR1 1223 1349 -234 218 250 190 0 chr1 203748656 203748756 -38915597 - L2 LINE L2 -4 3309 3191 463 233 29 19 chr1 203753556 203753659 -38910694 - L2 LINE L2 -16 3297 3194 393 250 83 33 chr1 203754172 203754292 -38910061 - L2 LINE L2 0 3313 3188 1393 163 4 8 chr1 203755465 203755705 -38908648 + AluJo SINE Alu 59 297 -15 510 317 76 15 chr1 203756451 203756675 -38907678 - MIR3 SINE MIR -23 185 5 1667 173 10 3 chr1 203757517 203757812 -38906541 + AluJb SINE Alu 1 297 -15 270 56 0 0 chr1 203757825 203757861 -38906492 + (TG)n Simple_repeat Simple_repeat 1 36 0 720 202 131 11 chr1 203758331 203758514 -38905839 - MER3 DNA MER1_type -4 205 1 1478 195 16 16 chr1 203760256 203760559 -38903794 - AluJo SINE Alu -9 303 1 240 261 45 11 chr1 203761418 203761506 -38902847 + L1MC4a LINE L1 6074 6164 -1644 304 211 0 0 chr1 203761690 203761742 -38902611 - AluJ/monomer SINE Alu -13 289 238 5606 104 4 4 chr1 203762034 203762809 -38901544 - L1PA15 LINE L1 0 6165 5391 521 110 44 0 chr1 203764220 203764311 -38900042 + L1MA5A LINE L1 6199 6293 -4 410 287 21 45 chr1 203764339 203764531 -38899822 - MIR SINE MIR -56 206 20 408 20 0 0 chr1 203765102 203765151 -38899202 + (CA)n Simple_repeat Simple_repeat 2 50 0 2166 111 10 0 chr1 203765566 203765873 -38898480 + AluSp SINE Alu 3 312 -1 2411 75 0 3 chr1 203767102 203767408 -38896945 + AluSc SINE Alu 1 305 -4 441 317 124 0 chr1 203767577 203767738 -38896615 - MIR SINE MIR -50 212 32 628 272 44 6 chr1 203767768 203767926 -38896427 + MIR SINE MIR 34 197 -65 1981 139 0 10 chr1 203768949 203769258 -38895095 + AluJb SINE Alu 2 307 -5 189 0 0 0 chr1 203769657 203769678 -38894675 + (A)n Simple_repeat Simple_repeat 1 21 0 314 233 0 0 chr1 203771024 203771084 -38893269 - L2 LINE L2 -3 3310 3251 364 265 93 70 chr1 203772205 203772590 -38891763 + L1ME4a LINE L1 5725 6118 -3 230 167 236 0 chr1 203772704 203772776 -38891577 - MIR SINE MIR -59 203 115 430 209 23 101 chr1 203775050 203775179 -38889174 + MIR SINE MIR 35 153 -109 698 116 33 25 chr1 203775227 203775348 -38889005 - FLAM_C SINE Alu -1 142 21 1166 155 52 9 chr1 203775369 203775582 -38888771 - AluJo SINE Alu -6 306 85 696 288 56 12 chr1 203775601 203775851 -38888502 + MIR SINE MIR 2 262 0 1598 165 5 118 chr1 203776184 203776591 -38887762 + MLT1B LTR MaLR 30 390 0 363 278 177 38 chr1 203777138 203777347 -38887006 + MER102a DNA MER1_type 92 329 -1 468 288 39 26 chr1 203777347 203777500 -38886853 - MIR3 SINE MIR -52 156 2 1984 112 27 0 chr1 203777554 203777848 -38886505 + AluSp SINE Alu 2 303 -10 201 288 119 0 chr1 203777860 203777919 -38886434 - L2 LINE L2 -42 3271 3206 199 207 52 17 chr1 203779963 203780021 -38884332 + MIR SINE MIR 16 75 -133 234 279 76 0 chr1 203780121 203780200 -38884153 + MIR SINE MIR 112 196 -66 1302 259 140 7 chr1 203781316 203781921 -38882432 - L2 LINE L2 0 3313 2623 516 286 196 18 chr1 203782683 203782907 -38881446 - Charlie8 DNA MER1_type -2152 265 2 285 231 209 0 chr1 203782924 203783015 -38881338 + L2 LINE L2 3201 3310 -3 217 329 111 0 chr1 203783034 203783137 -38881216 - MIR SINE MIR -66 142 36 22 56 0 0 chr1 203783714 203783750 -38880603 + AT_rich Low_complexity Low_complexity 1 36 0 201 147 0 0 chr1 203783797 203783831 -38880522 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 202 333 48 0 chr1 203784233 203784317 -38880036 - MIR SINE MIR -155 107 20 609 150 0 19 chr1 203785169 203785329 -38879024 + (TG)n Simple_repeat Simple_repeat 2 158 0 796 93 260 0 chr1 203785355 203785505 -38878848 + MER53 DNA DNA 1 189 0 2228 118 3 0 chr1 203786652 203786948 -38877405 + AluSx SINE Alu 1 297 -15 204 182 0 0 chr1 203787137 203787181 -38877172 + (CA)n Simple_repeat Simple_repeat 2 45 0 2262 112 0 20 chr1 203788491 203788796 -38875557 - AluSx SINE Alu -13 299 1 21 57 0 0 chr1 203788804 203788839 -38875514 + AT_rich Low_complexity Low_complexity 1 35 0 199 281 0 0 chr1 203789524 203789581 -38874772 + L2 LINE L2 3141 3197 -75 714 236 130 44 chr1 203789831 203790124 -38874229 + L2 LINE L2 2042 2359 -955 1966 154 3 28 chr1 203790135 203790453 -38873900 + AluSx SINE Alu 1 310 -2 2033 114 0 0 chr1 203790763 203791027 -38873326 - AluSx SINE Alu -48 264 1 419 341 112 33 chr1 203791136 203791688 -38872665 + L2 LINE L2 2691 3272 0 270 0 0 0 chr1 203792686 203792716 -38871637 + (CA)n Simple_repeat Simple_repeat 1 30 0 1181 187 89 95 chr1 203793033 203793515 -38870838 + L1MC5 LINE L1 6907 7385 -576 1200 205 12 37 chr1 203793538 203793865 -38870488 + L1MC5 LINE L1 7590 7908 -53 470 264 40 0 chr1 203795237 203795385 -38868968 - L1ME1 LINE L1 -5 6161 6008 204 296 40 56 chr1 203795393 203795518 -38868835 + MIR3 SINE MIR 38 160 -48 201 291 39 31 chr1 203795672 203795701 -38868652 + MIR SINE MIR 65 92 -170 2373 72 3 34 chr1 203795701 203796022 -38868331 - AluSq SINE Alu -2 311 1 201 291 39 31 chr1 203796022 203796119 -38868234 + MIR SINE MIR 92 192 -70 2475 53 0 13 chr1 203796875 203797177 -38867176 - AluSx SINE Alu -14 298 1 2318 92 0 3 chr1 203797252 203797547 -38866806 - AluSx SINE Alu -18 294 1 1287 96 34 29 chr1 203797558 203797766 -38866587 - L1MA5 LINE L1 -2 6298 6090 1900 159 0 6 chr1 203797945 203798259 -38866094 - AluJo SINE Alu 0 312 1 210 171 0 0 chr1 203799378 203799419 -38864934 + GA-rich Low_complexity Low_complexity 2 42 0 21 0 0 0 chr1 203799873 203799894 -38864459 + AT_rich Low_complexity Low_complexity 1 21 0 1510 199 61 25 chr1 203800053 203800414 -38863939 - L1ME2 LINE L1 -9 6155 5782 36 40 0 0 chr1 203800599 203800649 -38863704 + AT_rich Low_complexity Low_complexity 1 50 0 229 235 25 84 chr1 203800674 203800793 -38863560 - L1ME4a LINE L1 -84 6037 5926 326 281 135 17 chr1 203800840 203801018 -38863335 - L1ME4a LINE L1 -296 5825 5627 300 215 15 0 chr1 203801020 203801085 -38863268 - MLT2B1 LTR ERVL 0 520 455 1884 143 0 4 chr1 203801086 203801359 -38862994 + AluJb SINE Alu 13 284 -28 466 222 10 0 chr1 203801381 203801480 -38862873 - MLT2D LTR ERVL -312 102 3 195 320 39 0 chr1 203803907 203803985 -38860368 + MIR SINE MIR 86 166 -96 2589 178 40 24 chr1 203804167 203804712 -38859641 - L1MD2 LINE L1 -1 6358 5805 393 284 24 0 chr1 203804802 203804929 -38859424 + MER103 DNA DNA 36 165 -1 451 234 71 33 chr1 203804997 203805181 -38859172 + MIR SINE MIR 11 201 -61 325 308 6 50 chr1 203805987 203806146 -38858207 - MIR3 SINE MIR -19 189 38 209 385 0 0 chr1 203806399 203806490 -38857863 - MIR3 SINE MIR -5 203 113 306 336 62 74 chr1 203808174 203808513 -38855840 - L2 LINE L2 -6 3266 2932 389 292 127 40 chr1 203808619 203809219 -38855134 - L2 LINE L2 -1007 2307 1656 200 139 0 23 chr1 203809810 203809853 -38854500 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 237 195 44 0 chr1 203810579 203810648 -38853705 + MIR SINE MIR 86 139 -69 393 302 0 8 chr1 203811282 203811408 -38852945 - MIR3 SINE MIR -42 166 42 240 59 0 0 chr1 203811621 203811655 -38852698 + (ACTG)n Simple_repeat Simple_repeat 4 37 0 2433 94 0 3 chr1 203812822 203813129 -38851224 + AluSq SINE Alu 1 306 -7 2005 142 13 7 chr1 203814320 203814630 -38849723 - AluSx SINE Alu 0 312 1 1260 257 30 88 chr1 203815712 203816173 -38848180 - L1MC4 LINE L1 0 8042 7556 1056 195 29 5 chr1 203816173 203816383 -38847970 + MER20 DNA MER1_type 4 218 -1 1260 257 30 88 chr1 203816383 203816511 -38847842 - L1MC4 LINE L1 -486 7556 7500 613 196 49 82 chr1 203816511 203816695 -38847658 + MER5B DNA MER1_type 1 178 0 1260 257 30 88 chr1 203816695 203816828 -38847525 - L1MC4 LINE L1 -542 7500 7361 352 282 86 35 chr1 203816868 203817042 -38847311 - L1ME4a LINE L1 -296 5825 5643 1478 266 134 67 chr1 203817248 203818375 -38845978 - L1MCc LINE L1 -5062 1361 159 303 270 146 0 chr1 203818378 203818467 -38845886 - MER63A DNA MER1_type -3 207 106 592 172 76 41 chr1 203818540 203818685 -38845668 - L1MCc LINE L1 -6257 166 17 385 228 0 13 chr1 203820741 203820820 -38843533 - L1MC4 LINE L1 -149 7893 7816 609 157 69 0 chr1 203820837 203820939 -38843414 + MER46A DNA MER2_type 125 233 -3 1654 217 164 18 chr1 203820946 203821457 -38842896 - L1MC4 LINE L1 -978 7064 6479 2197 121 0 3 chr1 203821833 203822131 -38842222 - AluSx SINE Alu -15 297 1 656 257 146 53 chr1 203824681 203825098 -38839255 + MLT1J LTR MaLR 4 459 -52 585 297 190 3 chr1 203825490 203825817 -38838536 - L3 LINE CR1 -10 1567 1180 316 237 34 25 chr1 203826037 203826155 -38838198 - MIR SINE MIR -10 252 134 5032 120 94 53 chr1 203826342 203827675 -38836678 - pTR5 LTR ERV1 -143 2295 757 1841 147 7 10 chr1 203827675 203827967 -38836386 + AluSx SINE Alu 15 305 -7 2205 40 0 40 chr1 203828056 203828334 -38836019 - AluY SINE Alu -44 267 1 22 0 0 0 chr1 203828494 203828516 -38835837 + AT_rich Low_complexity Low_complexity 1 22 0 722 264 29 24 chr1 203828548 203828756 -38835597 + MIR SINE MIR 19 227 -35 28 29 0 0 chr1 203829080 203829115 -38835238 + AT_rich Low_complexity Low_complexity 1 35 0 421 298 67 11 chr1 203829755 203829933 -38834420 - MIR SINE MIR -6 256 69 253 266 169 8 chr1 203830185 203830309 -38834044 + MIR SINE MIR 48 191 -71 544 270 38 38 chr1 203830372 203830583 -38833770 - L2 LINE L2 0 3313 3103 185 319 70 32 chr1 203830591 203830748 -38833605 + L2 LINE L2 2931 3093 -179 4223 142 16 35 chr1 203832208 203832919 -38831434 - MER50 LTR ERV1 -23 711 15 2381 100 7 3 chr1 203833146 203833456 -38830897 + AluSq SINE Alu 1 311 -2 1757 106 97 131 chr1 203833682 203833749 -38830604 - MLT1B LTR MaLR 0 390 322 1834 140 10 27 chr1 203833749 203834049 -38830304 + AluJb SINE Alu 1 295 -17 1757 106 97 131 chr1 203834049 203834271 -38830082 - MLT1B LTR MaLR -68 322 116 2195 109 0 3 chr1 203834271 203834564 -38829789 - AluSx SINE Alu -20 292 1 1757 106 97 131 chr1 203834564 203834677 -38829676 - MLT1B LTR MaLR -274 116 1 4560 53 17 39 chr1 203835069 203836127 -38828226 + MER11A LTR ERVK 1 1266 0 623 169 107 6 chr1 203836411 203836647 -38827706 + LTR33 LTR ERVL 209 513 -8 3769 203 27 14 chr1 203836712 203837515 -38826838 - L1MB8 LINE L1 -12 6166 5353 536 246 22 0 chr1 203837516 203837654 -38826699 - MIR SINE MIR -78 184 44 768 245 74 25 chr1 203839225 203839534 -38824819 - LTR37B LTR ERV1 -20 448 105 353 252 139 9 chr1 203841129 203841244 -38823109 + MIR SINE MIR 18 147 -61 1160 181 73 0 chr1 203841259 203841463 -38822890 - MER58A DNA MER1_type -2 222 4 479 256 0 39 chr1 203842607 203842736 -38821617 - MIR SINE MIR -61 147 24 2052 136 19 13 chr1 203843509 203843817 -38820536 + AluJb SINE Alu 3 312 0 616 301 81 8 chr1 203844777 203845013 -38819340 + MIR SINE MIR 2 254 -8 323 264 109 0 chr1 203845026 203845136 -38819217 - MIR SINE MIR -117 145 24 241 118 39 0 chr1 203846004 203846055 -38818298 + CT-rich Low_complexity Low_complexity 4 56 0 2220 119 7 0 chr1 203846589 203846877 -38817476 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr1 203846877 203846899 -38817454 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2220 119 7 0 chr1 203846899 203846920 -38817433 + AluSx SINE Alu 293 312 0 588 228 7 28 chr1 203847095 203847240 -38817113 + L2 LINE L2 3172 3313 0 583 174 0 0 chr1 203849201 203849293 -38815060 + FLAM_A SINE Alu 16 107 -35 300 186 0 0 chr1 203849301 203849360 -38814993 + GA-rich Low_complexity Low_complexity 1 59 0 258 348 104 39 chr1 203850240 203850988 -38813365 + L2 LINE L2 2134 2930 -384 200 206 278 0 chr1 203851364 203851461 -38812892 + MIR SINE MIR 136 259 -3 180 0 0 0 chr1 203852035 203852055 -38812298 + (GA)n Simple_repeat Simple_repeat 2 21 0 332 250 0 0 chr1 203853653 203853724 -38810629 - MIR SINE MIR -2 260 190 1105 212 62 7 chr1 203853724 203854030 -38810323 - MER5C DNA MER1_type -1 323 1 374 216 93 26 chr1 203854030 203854154 -38810199 - MIR SINE MIR -64 198 66 310 240 10 10 chr1 203854440 203854540 -38809813 + MIR SINE MIR 153 252 -10 1116 120 36 36 chr1 203854716 203854908 -38809445 - MER20 DNA MER1_type -27 192 1 237 284 25 12 chr1 203854996 203855077 -38809276 + GA-rich Low_complexity Low_complexity 2 83 0 250 221 151 0 chr1 203855277 203855363 -38808990 + MIR SINE MIR 83 181 -81 2275 97 3 0 chr1 203855856 203856144 -38808209 - AluSq SINE Alu -24 289 1 1301 165 29 2 chr1 203856318 203856607 -38807746 + MER2 DNA MER2_type 1 338 -7 3917 129 76 62 chr1 203856733 203857982 -38806371 - pTR5 LTR ERV1 -143 2295 739 233 312 64 8 chr1 203859151 203859276 -38805077 + MIR3 SINE MIR 53 184 -24 2127 221 79 9 chr1 203859936 203860523 -38803830 - MLT1E2 LTR MaLR 0 626 4 1986 143 55 6 chr1 203860594 203860922 -38803431 + MER2 DNA MER2_type 1 344 0 189 0 0 0 chr1 203860956 203860977 -38803376 + (T)n Simple_repeat Simple_repeat 1 21 0 404 196 0 52 chr1 203861144 203861241 -38803112 + L2 LINE L2 3222 3313 0 1886 129 3 21 chr1 203861334 203861533 -38802820 + MLT2D LTR ERVL 1 195 -219 1776 114 7 37 chr1 203861533 203861806 -38802547 + AluSx SINE Alu 48 312 0 1886 129 3 21 chr1 203861806 203861892 -38802461 + MLT2D LTR ERVL 195 281 -133 854 291 69 52 chr1 203862237 203862517 -38801836 + L2 LINE L2 2829 3122 -191 2088 121 3 38 chr1 203862517 203862830 -38801523 - AluSx SINE Alu -8 304 3 854 291 69 52 chr1 203862830 203863026 -38801327 + L2 LINE L2 3122 3313 0 4483 131 32 61 chr1 203863457 203863624 -38800729 - LTR39 LTR ERV1 -2 781 611 1884 137 3 35 chr1 203863624 203863960 -38800393 - AluJb SINE Alu 0 312 1 4483 131 32 61 chr1 203863960 203864596 -38799757 - LTR39 LTR ERV1 -172 611 1 245 277 17 21 chr1 203866257 203866383 -38797970 - L1ME LINE L1 -490 5631 5507 4015 145 101 26 chr1 203866450 203867841 -38796512 - pTR5 LTR ERV1 0 2606 1524 222 171 0 0 chr1 203868034 203868075 -38796278 + (TA)n Simple_repeat Simple_repeat 2 42 0 630 240 111 22 chr1 203868241 203868466 -38795887 - MIR SINE MIR 0 262 18 1552 245 174 17 chr1 203868516 203869119 -38795234 + LTR50 LTR ERVL 9 706 -89 639 257 213 40 chr1 203869216 203869566 -38794787 + LTR16A LTR ERVL 26 429 -21 294 29 0 0 chr1 203871216 203871251 -38793102 + (TG)n Simple_repeat Simple_repeat 2 36 0 2441 162 27 5 chr1 203871532 203871945 -38792408 - MSTB LTR MaLR -4 422 1 1192 239 86 13 chr1 203872006 203872430 -38791923 + MLT1G1 LTR MaLR 3 595 0 737 240 135 61 chr1 203872430 203872583 -38791770 - HAL1 LINE L1 -1016 1491 1351 222 37 0 0 chr1 203872583 203872610 -38791743 + (TAA)n Simple_repeat Simple_repeat 1 27 0 737 240 135 61 chr1 203872610 203873080 -38791273 - HAL1 LINE L1 -1156 1351 822 2651 97 8 3 chr1 203873250 203873610 -38790743 - THE1B LTR MaLR -2 362 1 8513 212 54 56 chr1 203873701 203874468 -38789885 - L1MEc LINE L1 -1546 4669 3902 225 69 0 0 chr1 203874468 203874497 -38789856 - MADE1 DNA Mariner 0 80 52 8513 212 54 56 chr1 203874497 203876718 -38787635 - L1MEc LINE L1 -2313 3902 1734 652 61 20 10 chr1 203876785 203876883 -38787470 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 1454 202 29 52 chr1 203876883 203877190 -38787163 - AluJo SINE Alu 0 302 3 1866 156 7 23 chr1 203877343 203877644 -38786709 + AluJo SINE Alu 1 296 -16 282 253 0 33 chr1 203877824 203877915 -38786438 + MIR SINE MIR 67 154 -108 1952 282 78 18 chr1 203878789 203879950 -38784403 + HERVL LTR ERVL 681 2021 -2975 1955 326 62 42 chr1 203880001 203881265 -38783088 + HERVL LTR ERVL 4062 4925 -71 710 377 42 3 chr1 203881347 203881657 -38782696 + LTR16B LTR ERVL 141 462 -2 22 56 0 0 chr1 203881718 203881754 -38782599 + AT_rich Low_complexity Low_complexity 1 36 0 328 250 10 67 chr1 203881754 203881858 -38782495 - HAL1 LINE L1 -13 2494 2397 43047 31 21 1 chr1 203882267 203888297 -38776056 - L1HS LINE L1 -1 6154 1 3209 243 61 65 chr1 203888289 203889728 -38774625 - HAL1 LINE L1 -89 2418 985 * 2505 62 0 0 chr1 203890079 203890383 -38773970 - AluY SINE Alu -7 304 1 182 125 0 143 chr1 203890489 203890545 -38773808 + MER5B DNA MER1_type 2 49 -129 249 208 0 0 chr1 203890588 203890641 -38773712 - L1MC1 LINE L1 -5 6328 6276 379 303 58 39 chr1 203890677 203890832 -38773521 - MER5A DNA MER1_type -25 164 7 233 132 57 0 chr1 203891433 203891486 -38772867 + (TA)n Simple_repeat Simple_repeat 1 56 0 1908 126 36 7 chr1 203891730 203892036 -38772317 + AluSx SINE Alu 1 314 0 1849 135 0 0 chr1 203892068 203892320 -38772033 - AluSq SINE Alu -61 252 1 291 232 0 24 chr1 203892618 203892700 -38771653 - MLT1K LTR MaLR 0 588 509 234 275 0 64 chr1 203892700 203892727 -38771626 - LTR67 LTR ERVL 0 557 456 466 244 16 31 chr1 203892967 203893094 -38771259 - MLT1K LTR MaLR -327 261 137 185 146 21 0 chr1 203893109 203893157 -38771196 + GA-rich Low_complexity Low_complexity 2 50 0 866 271 53 72 chr1 203893171 203893644 -38770709 - LTR16B LTR ERVL 0 464 1 730 348 173 4 chr1 203894720 203895177 -38769176 - L3 LINE CR1 -205 1372 839 411 191 0 12 chr1 203895329 203895413 -38768940 + MER96 DNA MER1_type? 4 86 -89 24 67 0 0 chr1 203896393 203896438 -38767915 + AT_rich Low_complexity Low_complexity 1 45 0 2429 99 0 0 chr1 203896547 203896859 -38767494 + AluSx SINE Alu 1 312 0 1957 84 65 0 chr1 203896878 203897164 -38767189 + AluSc SINE Alu 1 303 0 1036 241 121 3 chr1 203897258 203897565 -38766788 - MER2 DNA MER2_type -1 344 2 2297 101 3 0 chr1 203897639 203897937 -38766416 + AluSx SINE Alu 1 299 -13 248 77 26 0 chr1 203897939 203897978 -38766375 + (TA)n Simple_repeat Simple_repeat 2 41 0 348 250 31 56 chr1 203898040 203898200 -38766153 - HAL1b LINE L1 -439 909 754 843 290 43 77 chr1 203898625 203898893 -38765460 - HAL1 LINE L1 -691 1816 1540 1937 157 3 0 chr1 203898893 203899186 -38765167 - AluSx SINE Alu -18 294 1 843 290 43 77 chr1 203899186 203899618 -38764735 - HAL1 LINE L1 -967 1540 1140 1946 212 10 55 chr1 203899640 203900163 -38764190 - L1ME1 LINE L1 -5 6161 5663 1964 144 0 13 chr1 203900164 203900469 -38763884 - AluJb SINE Alu -11 301 1 2427 76 0 3 chr1 203900755 203901058 -38763295 - AluSc SINE Alu -4 305 4 182 377 138 14 chr1 203901440 203901801 -38762552 - L2 LINE L2 -656 2658 2253 2036 120 34 0 chr1 203902147 203902439 -38761914 + AluSx SINE Alu 1 302 -10 200 162 0 0 chr1 203903058 203903095 -38761258 - L2 LINE L2 0 3313 3277 1011 219 0 5 chr1 203904456 203904666 -38759687 - MER3 DNA MER1_type 0 209 1 920 64 80 0 chr1 203904779 203904904 -38759449 + MER85 DNA T2_type 1 135 -4 210 37 0 0 chr1 203906006 203906033 -38758320 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 270 0 0 0 chr1 203906032 203906062 -38758291 + (GA)n Simple_repeat Simple_repeat 1 30 0 218 79 0 26 chr1 203906160 203906198 -38758155 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 245 73 0 24 chr1 203906468 203906509 -38757844 + (GGGTG)n Simple_repeat Simple_repeat 5 44 0 30 93 0 0 chr1 203906564 203906650 -38757703 + GC_rich Low_complexity Low_complexity 1 86 0 301 235 158 108 chr1 203906754 203907141 -38757212 - L1M2 LINE L1 -5483 1366 961 227 394 30 30 chr1 203908861 203908993 -38755360 - L2 LINE L2 -34 3238 3107 552 294 256 29 chr1 203909059 203909579 -38754774 - L3 LINE CR1 -171 1406 769 200 436 99 0 chr1 203910152 203910253 -38754100 + L2 LINE L2 3119 3229 -43 1683 179 55 12 chr1 203910257 203910587 -38753766 + MER2 DNA MER2_type 1 344 0 253 314 29 0 chr1 203911206 203911276 -38753077 - L3 LINE CR1 -1070 507 436 186 103 0 0 chr1 203911376 203911405 -38752948 + (TG)n Simple_repeat Simple_repeat 2 30 0 183 255 39 20 chr1 203911476 203911527 -38752826 + MIR3 SINE MIR 140 191 -17 1916 120 0 18 chr1 203911728 203912011 -38752342 + AluSx SINE Alu 34 311 -1 22 35 0 0 chr1 203912852 203912881 -38751472 + AT_rich Low_complexity Low_complexity 1 29 0 332 266 35 92 chr1 203913492 203913665 -38750688 - MER117 DNA MER1_type -31 166 4 194 318 84 37 chr1 203913720 203913827 -38750526 - MIR SINE MIR -150 112 1 14980 121 32 10 chr1 203914286 203916652 -38747701 + Tigger1 DNA MER2_type 1 2418 0 227 254 119 60 chr1 203917156 203917290 -38747063 + MIR3 SINE MIR 53 194 -14 2415 75 0 0 chr1 203917766 203918060 -38746293 + AluSc SINE Alu 1 294 -15 2834 113 43 51 chr1 203919494 203920006 -38744347 - L1MA7 LINE L1 -28 6263 5756 1041 266 47 83 chr1 203920014 203920592 -38743761 + L1ME3A LINE L1 5584 6140 -30 2038 143 7 0 chr1 203923171 203923479 -38740874 - AluSx SINE Alu -2 310 1 1161 359 97 14 chr1 203923491 203924191 -38740162 + L2 LINE L2 2045 2802 -512 633 137 0 173 chr1 203924192 203924360 -38739993 - MLT1-int LTR MaLR -89 1282 1144 312 278 61 0 chr1 203924393 203924508 -38739845 - HAL1 LINE L1 -322 2185 2064 1031 285 32 35 chr1 203924713 203925116 -38739237 - MLT1J1 LTR MaLR 0 446 45 207 0 0 0 chr1 203925326 203925349 -38739004 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 2184 107 7 3 chr1 203925902 203926200 -38738153 - AluSx SINE Alu -13 299 1 1175 267 106 23 chr1 203926425 203927122 -38737231 - L1M4 LINE L1 -1015 5131 4377 369 279 127 0 chr1 203927130 203927288 -38737065 - L1M4 LINE L1 -1813 4333 4156 3229 133 36 76 chr1 203927380 203927601 -38736752 + L1MB7 LINE L1 5485 5713 -471 2224 117 0 13 chr1 203927601 203927917 -38736436 - AluSx SINE Alu 0 312 1 3229 133 36 76 chr1 203927917 203928407 -38735946 + L1MB7 LINE L1 5713 6168 -16 244 270 40 0 chr1 203928603 203928677 -38735676 + L3 LINE CR1 576 652 -925 364 339 27 63 chr1 203929903 203930124 -38734229 + MIR SINE MIR 20 232 -30 26 30 0 0 chr1 203930642 203930675 -38733678 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 203930737 203930758 -38733595 + AT_rich Low_complexity Low_complexity 1 21 0 241 261 39 31 chr1 203932310 203932440 -38731913 - L1P LINE L1 -1130 5016 4886 2105 148 36 6 chr1 203932498 203932862 -38731491 + THE1C LTR MaLR 1 375 0 1573 219 25 31 chr1 203933116 203933508 -38730845 - MER68 LTR ERV1 -172 390 1 3210 166 46 13 chr1 203933561 203934169 -38730184 - L1PA16 LINE L1 -20 6146 5519 4804 239 57 38 chr1 203934177 203934348 -38730005 - L1M4 LINE L1 -1149 4997 4831 2060 130 0 3 chr1 203934348 203934640 -38729713 - AluSc SINE Alu -15 294 4 4804 239 57 38 chr1 203934640 203936353 -38728000 - L1M4 LINE L1 -1315 4831 3076 848 237 22 22 chr1 203936378 203936652 -38727701 - MER20B DNA MER1_type -40 743 470 782 152 0 7 chr1 203936710 203936848 -38727505 - L1MC1 LINE L1 -160 6173 6037 1252 136 21 25 chr1 203936962 203937205 -38727148 - L1MC1 LINE L1 -278 6055 5814 * 11630 189 23 17 chr1 203937204 203937949 -38726404 - L1PA16 LINE L1 0 6869 6130 2274 92 26 0 chr1 203937949 203938252 -38726101 - AluY SINE Alu 0 311 1 11630 189 23 17 chr1 203938252 203939145 -38725208 - L1PA16 LINE L1 -739 6130 5244 2260 95 16 3 chr1 203939145 203939451 -38724902 - AluSx SINE Alu 0 312 3 11630 189 23 17 chr1 203939451 203941674 -38722679 - L1PA16 LINE L1 -1625 5244 2992 41480 45 2 0 chr1 203941686 203947824 -38716529 - L1PA4 LINE L1 -2 6153 4 301 264 11 11 chr1 203947822 203947913 -38716440 - L1PA16 LINE L1 -3844 3005 2915 * 6215 103 19 3 chr1 203947913 203949641 -38714712 - L1PA11 LINE L1 0 6174 4431 3749 117 25 76 chr1 203949641 203949913 -38714440 - L1PA16 LINE L1 -4046 2803 2519 1861 187 3 16 chr1 203949913 203950229 -38714124 - AluJo SINE Alu 0 312 1 3749 117 25 76 chr1 203950229 203950642 -38713711 - L1PA16 LINE L1 -4330 2519 2159 1575 210 0 0 chr1 203950642 203950913 -38713440 - AluJb SINE Alu -25 287 17 3749 117 25 76 chr1 203950913 203950993 -38713360 - L1PA16 LINE L1 -4690 2159 2076 3289 167 5 4 chr1 203950991 203951743 -38712610 - L1MC1 LINE L1 -500 5902 5152 * 1688 273 34 17 chr1 203951740 203952506 -38711847 - L1M4 LINE L1 -4947 1595 817 * 323 298 62 53 chr1 203952625 203952947 -38711406 - L1M4 LINE L1 -6029 617 13 348 188 221 20 chr1 203952964 203953113 -38711240 - L1MC1 LINE L1 -4538 1858 1680 2224 144 83 2 chr1 203953130 203953526 -38710827 - MSTA LTR MaLR 0 428 1 8878 177 18 16 chr1 203953526 203954797 -38709556 - MSTA-int LTR MaLR 0 1651 384 2292 86 0 26 chr1 203954797 203955100 -38709253 + AluY SINE Alu 1 295 -16 8878 177 18 16 chr1 203955100 203955128 -38709225 - MSTA-int LTR MaLR -1267 384 358 1919 97 124 0 chr1 203955128 203955395 -38708958 - AluSx SINE Alu -12 300 1 8878 177 18 16 chr1 203955395 203955742 -38708611 - MSTA-int LTR MaLR -1293 358 1 1029 181 42 0 chr1 203955742 203955935 -38708418 - MSTA LTR MaLR 0 428 228 654 286 48 13 chr1 203956346 203956573 -38707780 + MIR SINE MIR 2 236 -26 1570 167 87 7 chr1 203957037 203957313 -38707040 + AluJo SINE Alu 1 298 -14 1713 161 48 27 chr1 203959523 203959859 -38704494 + MER2 DNA MER2_type 2 344 0 592 297 10 20 chr1 203960635 203960830 -38703523 - MLT1L LTR MaLR -318 297 105 1472 175 0 4 chr1 203960944 203961184 -38703169 - AluJb SINE Alu -73 239 1 36 53 0 0 chr1 203961804 203961861 -38702492 + AT_rich Low_complexity Low_complexity 1 57 0 376 296 15 0 chr1 203962190 203962322 -38702031 + L1M4 LINE L1 2662 2795 -3351 1587 117 95 59 chr1 203962323 203962866 -38701487 + MER51A LTR ERV1 1 634 0 517 189 43 128 chr1 203962866 203963024 -38701329 + L1M4 LINE L1 2793 2910 -3236 5616 50 0 0 chr1 203963024 203963708 -38700645 + L1PA7 LINE L1 5468 6151 -3 517 189 43 128 chr1 203963708 203963877 -38700476 + L1M4 LINE L1 2910 3092 -3054 * 1809 36 0 0 chr1 203963872 203964097 -38700256 - L1PA7 LINE L1 -297 5875 5651 2332 55 7 0 chr1 203964097 203964389 -38699964 + L1PA7 LINE L1 5860 6154 0 344 203 108 22 chr1 203964412 203964644 -38699709 + L1M4 LINE L1 3083 3334 -2812 2114 229 50 10 chr1 203965636 203966431 -38697922 + L1MC4 LINE L1 6460 7435 -607 2090 274 48 28 chr1 203966477 203967466 -38696887 + L1M4 LINE L1 3416 4423 -1723 270 329 56 12 chr1 203967482 203967643 -38696710 + HERVL LTR ERVL 2102 2269 -3385 1158 345 42 24 chr1 203967709 203968570 -38695783 + HERVL LTR ERVL 2374 3249 -2405 1529 181 42 35 chr1 203968586 203968721 -38695632 + AluJo SINE Alu 1 134 -178 1915 159 3 3 chr1 203968721 203969016 -38695337 + AluJb SINE Alu 1 295 -17 1529 181 42 35 chr1 203969016 203969168 -38695185 + AluJo SINE Alu 134 290 -22 1914 155 3 35 chr1 203969300 203969616 -38694737 + AluSx SINE Alu 1 306 -6 415 297 31 79 chr1 203969730 203970020 -38694333 + HERVL LTR ERVL 3274 3549 -2215 692 191 38 0 chr1 203970913 203971044 -38693309 + Tigger1 DNA MER2_type 1 136 -2282 * 1051 164 29 5 chr1 203971039 203971246 -38693107 + Tigger1 DNA MER2_type 2207 2418 0 295 285 70 61 chr1 203971440 203971668 -38692685 + L2 LINE L2 2813 3042 -230 232 219 105 123 chr1 203971886 203972000 -38692353 + L2 LINE L2 3156 3267 -5 656 307 4 16 chr1 203972737 203972991 -38691362 - L1MEc LINE L1 -6109 287 37 525 236 19 32 chr1 203973033 203973190 -38691163 + MER106B DNA MER1_type 2 156 -903 380 138 0 221 chr1 203973194 203973339 -38691014 - L1PA16 LINE L1 -16 6150 6038 31 44 0 0 chr1 203973351 203973396 -38690957 + AT_rich Low_complexity Low_complexity 1 45 0 232 167 0 0 chr1 203973404 203973446 -38690907 + MER106B DNA MER1_type 1018 1059 0 1695 169 7 27 chr1 203973539 203973840 -38690513 + AluJb SINE Alu 2 296 -16 2832 16 0 0 chr1 203974252 203974562 -38689791 - AluY SINE Alu -1 310 1 2230 201 94 38 chr1 203974778 203975158 -38689195 + L1MB7 LINE L1 5429 5786 -398 2067 172 59 7 chr1 203975158 203975565 -38688788 + MSTA LTR MaLR 1 428 0 2230 201 94 38 chr1 203975565 203975645 -38688708 + L1MB7 LINE L1 5786 5860 -324 2520 130 47 0 chr1 203975645 203976054 -38688299 + MSTA LTR MaLR 1 428 0 2230 201 94 38 chr1 203976054 203976275 -38688078 + L1MB7 LINE L1 5860 6149 -35 25 51 0 0 chr1 203976630 203976669 -38687684 + AT_rich Low_complexity Low_complexity 1 39 0 3144 140 53 72 chr1 203976764 203976958 -38687395 + LTR1 LTR ERV1 1 197 -588 2356 78 24 0 chr1 203976958 203977252 -38687101 + AluSg SINE Alu 1 301 -9 3144 140 53 72 chr1 203977252 203977915 -38686438 + LTR1 LTR ERV1 197 785 0 551 274 68 12 chr1 203978158 203978406 -38685947 + MIR SINE MIR 1 262 0 22 35 0 0 chr1 203979127 203979156 -38685197 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr1 203980426 203980468 -38683885 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr1 203981289 203981319 -38683034 + AT_rich Low_complexity Low_complexity 1 30 0 185 261 0 22 chr1 203981407 203981453 -38682900 + MIR SINE MIR 102 146 -116 216 0 0 0 chr1 203981656 203981680 -38682673 + (A)n Simple_repeat Simple_repeat 1 24 0 206 316 116 11 chr1 203982050 203982145 -38682208 + MIR SINE MIR 21 125 -83 247 315 33 11 chr1 203982222 203982314 -38682039 + L3b LINE CR1 1363 1456 -127 763 289 140 40 chr1 203982928 203984227 -38680126 + L1MB4 LINE L1 2266 3694 -2452 752 276 81 3 chr1 203984282 203984626 -38679727 + L1MB4 LINE L1 3772 4142 -2004 2938 206 41 28 chr1 203985098 203985790 -38678563 + L1MB4 LINE L1 4454 5136 -1010 354 0 0 0 chr1 203985790 203985829 -38678524 - THE1C LTR MaLR 0 375 337 2938 206 41 28 chr1 203985829 203985965 -38678388 + L1MB4 LINE L1 5136 5261 -885 7557 21 6 0 chr1 203985965 203986856 -38677497 + L1PA4 LINE L1 5254 6149 -6 2938 206 41 28 chr1 203986856 203986881 -38677472 + L1MB4 LINE L1 5261 5284 -862 36 82 0 0 chr1 203986961 203987046 -38677307 + AT_rich Low_complexity Low_complexity 1 85 0 2531 78 9 9 chr1 203987046 203987393 -38676960 - THE1C LTR MaLR -28 347 1 4777 166 28 11 chr1 203987467 203988328 -38676025 + L1MB4 LINE L1 5304 6179 -1 637 154 26 0 chr1 203988348 203988465 -38675888 + L1MB4 LINE L1 5814 5933 -247 22 35 0 0 chr1 203988697 203988726 -38675627 + AT_rich Low_complexity Low_complexity 1 29 0 614 331 85 24 chr1 203989162 203989670 -38674683 + L1M4 LINE L1 4792 5330 -816 307 296 126 31 chr1 203992278 203992437 -38671916 - MIR3 SINE MIR -4 204 31 333 0 0 0 chr1 203993102 203993139 -38671214 + (TC)n Simple_repeat Simple_repeat 2 38 0 225 0 0 0 chr1 203993138 203993163 -38671190 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 567 242 27 20 chr1 203993482 203993631 -38670722 + MIR SINE MIR 102 251 -11 27 29 0 0 chr1 203994987 203995021 -38669332 + AT_rich Low_complexity Low_complexity 1 34 0 1991 123 0 3 chr1 203995446 203995753 -38668600 + AluSx SINE Alu 1 306 0 1646 92 147 40 chr1 203995785 203996057 -38668296 - AluY SINE Alu -10 301 1 1340 159 75 25 chr1 203996817 203997056 -38667297 - AluJo SINE Alu -61 251 1 195 343 238 0 chr1 203997256 203997428 -38666925 - MIR SINE MIR -2 260 48 666 286 169 56 chr1 203997479 203998247 -38666106 + HAL1 LINE L1 238 1092 -1415 286 292 103 15 chr1 203998274 203998469 -38665884 + HAL1 LINE L1 1217 1428 -1079 1054 228 4 12 chr1 203998520 203998761 -38665592 + HAL1 LINE L1 1510 1748 -759 438 305 108 41 chr1 203999020 203999289 -38665064 + L2 LINE L2 2629 2915 -399 24 0 0 0 chr1 203999754 203999778 -38664575 + AT_rich Low_complexity Low_complexity 1 24 0 2170 103 3 0 chr1 203999906 204000208 -38664145 - AluSq SINE Alu -8 305 3 1176 68 0 0 chr1 204000216 204000364 -38663989 + AluY SINE Alu 146 293 -18 1118 259 145 41 chr1 204000840 204001638 -38662715 + L1MC4a LINE L1 5803 6727 -1081 2061 167 31 19 chr1 204001674 204002034 -38662319 + THE1B LTR MaLR 1 364 0 11186 92 5 37 chr1 204002034 204002889 -38661464 + THE1B-int LTR MaLR 1 779 -801 1985 78 4 4 chr1 204002889 204003157 -38661196 + L1PA7 LINE L1 5887 6154 0 11186 92 5 37 chr1 204003157 204003934 -38660419 + THE1B-int LTR MaLR 779 1580 0 1990 156 36 25 chr1 204003934 204004294 -38660059 + THE1B LTR MaLR 1 364 0 397 272 37 15 chr1 204004303 204004439 -38659914 + L1MC4 LINE L1 6928 7066 -976 880 214 109 22 chr1 204004447 204004723 -38659630 + L1MC4 LINE L1 7188 7487 -555 2162 108 0 3 chr1 204004894 204005190 -38659163 + AluSg SINE Alu 1 295 -15 297 301 0 12 chr1 204005297 204005380 -38658973 - L2 LINE L2 -4 3268 3187 22 0 0 0 chr1 204005528 204005550 -38658803 + AT_rich Low_complexity Low_complexity 1 22 0 531 286 130 5 chr1 204005550 204005735 -38658618 + MIR SINE MIR 11 218 -44 1738 215 51 26 chr1 204005746 204006198 -38658155 + L1MB8 LINE L1 5673 6135 -43 1911 158 0 10 chr1 204006198 204006502 -38657851 - AluSx SINE Alu -11 301 1 1284 193 8 12 chr1 204007527 204007908 -38656445 + MSTB LTR MaLR 1 426 0 590 299 197 16 chr1 204008738 204009119 -38655234 + L2 LINE L2 2201 2650 -664 6097 66 16 0 chr1 204009439 204010260 -38654093 + L1P LINE L1 4355 5188 -958 1671 220 87 22 chr1 204010439 204010852 -38653501 + MER70B LTR ERVL 4 443 -135 347 209 139 0 chr1 204010935 204011021 -38653332 - L1MC4a LINE L1 -1840 5968 5871 6657 56 12 0 chr1 204012065 204013208 -38651145 - L1PA7 LINE L1 0 6154 4990 4285 197 27 35 chr1 204013330 204018145 -38646208 + L1PB4 LINE L1 2721 7588 -6 24 0 0 0 chr1 204018149 204018173 -38646180 + AT_rich Low_complexity Low_complexity 1 24 0 868 283 28 16 chr1 204018305 204018552 -38645801 + MIR SINE MIR 13 262 0 1890 229 71 13 chr1 204020867 204021418 -38642935 + L1MB3 LINE L1 3332 3914 -2232 1084 167 5 34 chr1 204021442 204021689 -38642664 + AluJb SINE Alu 85 325 0 5651 189 28 14 chr1 204021882 204022139 -38642214 + L1MB3 LINE L1 4029 4281 -1902 1842 146 3 37 chr1 204022139 204022460 -38641893 + AluSx SINE Alu 3 312 0 5651 189 28 14 chr1 204022460 204024325 -38640028 + L1MB3 LINE L1 4281 6176 -7 1946 164 14 6 chr1 204024340 204024699 -38639654 + L1MB3 LINE L1 5814 6175 -8 1166 144 15 20 chr1 204024960 204025161 -38639192 + Tigger2a DNA MER2_type 3 202 -232 959 203 0 16 chr1 204025162 204025349 -38639004 - AluJo SINE Alu -17 295 112 1332 167 13 8 chr1 204025380 204025619 -38638734 + Tigger2a DNA MER2_type 195 434 0 21 36 0 0 chr1 204025730 204025758 -38638595 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr1 204025801 204025841 -38638512 + AT_rich Low_complexity Low_complexity 1 40 0 345 24 0 0 chr1 204025943 204025985 -38638368 + (TG)n Simple_repeat Simple_repeat 2 43 0 2275 84 0 0 chr1 204028949 204029235 -38635118 + AluSg SINE Alu 1 286 -24 388 321 79 44 chr1 204029831 204030083 -38634270 - MIR SINE MIR -1 261 1 261 222 0 0 chr1 204031676 204031739 -38632614 + (CATA)n Simple_repeat Simple_repeat 2 64 0 903 239 60 100 chr1 204032029 204032577 -38631776 + L1ME4a LINE L1 5477 6002 -119 192 218 55 18 chr1 204032912 204032967 -38631386 - L3 LINE CR1 0 1577 1521 254 267 76 64 chr1 204033017 204033189 -38631164 + MER3 DNA MER1_type 36 209 0 * 932 198 46 15 chr1 204033189 204033238 -38631115 - MER3 DNA MER1_type -154 55 1 2408 78 10 0 chr1 204033429 204033735 -38630618 - AluSc SINE Alu 0 309 1 23 68 0 0 chr1 204034031 204034075 -38630278 + AT_rich Low_complexity Low_complexity 1 44 0 2113 111 0 3 chr1 204034158 204034456 -38629897 + AluSc SINE Alu 1 297 -12 191 311 0 0 chr1 204037093 204037138 -38627215 - L2 LINE L2 -17 3255 3211 1767 149 42 104 chr1 204037234 204037732 -38626621 + Charlie1b DNA MER1_type 39 505 -18 1716 153 46 0 chr1 204039221 204039503 -38624850 + AluSx SINE Alu 1 295 -17 2238 116 7 0 chr1 204039589 204039899 -38624454 + AluSx SINE Alu 1 312 0 231 313 220 86 chr1 204040175 204040488 -38623865 - L2 LINE L2 0 3272 2918 721 222 206 0 chr1 204041627 204041821 -38622532 - MIR SINE MIR -27 235 2 205 275 101 29 chr1 204042193 204042262 -38622091 + L2 LINE L2 3230 3303 -10 228 111 0 0 chr1 204042264 204042300 -38622053 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 208 294 0 15 chr1 204042602 204042670 -38621683 + GA-rich Low_complexity Low_complexity 2 68 0 27 29 0 0 chr1 204043175 204043209 -38621144 + AT_rich Low_complexity Low_complexity 1 34 0 1317 112 74 5 chr1 204043450 204043665 -38620688 - MER30 DNA MER1_type 0 230 1 2143 108 10 0 chr1 204043928 204044224 -38620129 + AluSx SINE Alu 1 299 -13 660 254 132 31 chr1 204044398 204044626 -38619727 - MIR SINE MIR 0 262 12 834 246 48 9 chr1 204044634 204044862 -38619491 - MIR SINE MIR -24 238 2 25 51 0 0 chr1 204045066 204045105 -38619248 + AT_rich Low_complexity Low_complexity 1 39 0 29 84 0 0 chr1 204045406 204045477 -38618876 + AT_rich Low_complexity Low_complexity 1 71 0 24 77 0 0 chr1 204045782 204045834 -38618519 + AT_rich Low_complexity Low_complexity 1 52 0 341 338 74 65 chr1 204048193 204048545 -38615808 + L3 LINE CR1 630 984 -593 739 287 101 37 chr1 204049232 204050014 -38614339 + L1ME3A LINE L1 4693 5528 -636 567 239 45 118 chr1 204050037 204050393 -38613960 + L1ME3A LINE L1 5752 6081 -89 907 280 177 16 chr1 204050510 204051043 -38613310 + L2 LINE L2 2615 3219 -94 274 302 83 36 chr1 204051104 204051382 -38612971 + L1 LINE L1 3713 4003 -2143 2037 87 4 4 chr1 204051705 204051980 -38612373 + AluSg SINE Alu 28 302 -8 318 50 0 0 chr1 204052090 204052130 -38612223 + (TG)n Simple_repeat Simple_repeat 1 40 0 545 270 149 0 chr1 204052187 204052361 -38611992 - MIR SINE MIR -9 253 54 5908 153 47 10 chr1 204052540 204054450 -38609903 - L1MA4A LINE L1 -6 6297 4324 651 186 120 4 chr1 204054767 204054957 -38609396 - L1PA16 LINE L1 -2 6163 5937 * 11551 238 22 12 chr1 204054954 204058800 -38605553 - L1PA12 LINE L1 -1487 6097 2185 957 349 39 27 chr1 204059265 204059855 -38604498 - L1PA12 LINE L1 -6190 1384 788 2170 149 32 3 chr1 204059912 204060287 -38604066 - L1PB4 LINE L1 -8 6148 5763 1133 131 6 0 chr1 204060287 204060455 -38603898 + FRAM SINE Alu 6 174 -2 3110 170 16 12 chr1 204060455 204060743 -38603610 - L1PB4 LINE L1 -380 5776 5490 1566 125 0 0 chr1 204060743 204060959 -38603394 - AluSg/x SINE Alu -12 300 85 3110 170 16 12 chr1 204060959 204061738 -38602615 - L1PB4 LINE L1 -666 5490 4703 667 75 0 28 chr1 204061822 204061928 -38602425 - L1MA3 LINE L1 0 6305 6203 357 125 0 0 chr1 204062010 204062066 -38602287 + (TA)n Simple_repeat Simple_repeat 2 57 0 412 217 33 0 chr1 204062183 204062275 -38602078 + MER103 DNA DNA 2 96 -70 2958 284 87 22 chr1 204063380 204064888 -38599465 + L1MEc LINE L1 39 1643 -4753 1234 180 102 0 chr1 204064928 204065172 -38599181 + MSTA LTR MaLR 2 270 -158 231 313 220 86 chr1 204066268 204066581 -38597772 + L2 LINE L2 2918 3272 0 2238 116 7 0 chr1 204066857 204067167 -38597186 - AluSx SINE Alu 0 312 1 1716 153 46 0 chr1 204067253 204067535 -38596818 - AluSx SINE Alu -17 295 1 1779 149 42 101 chr1 204069023 204069519 -38594834 - Charlie1b DNA MER1_type -18 505 39 191 311 0 0 chr1 204069615 204069660 -38594693 + L2 LINE L2 3211 3255 -17 2140 107 0 3 chr1 204072296 204072594 -38591759 - AluSc SINE Alu -12 297 1 23 68 0 0 chr1 204072677 204072721 -38591632 + AT_rich Low_complexity Low_complexity 1 44 0 2730 23 0 0 chr1 204073017 204073324 -38591029 + AluY SINE Alu 1 307 -4 1650 169 7 27 chr1 204073736 204074037 -38590316 - AluJb SINE Alu -16 296 2 243 167 0 0 chr1 204074130 204074172 -38590181 - MER106A DNA MER1_type 0 236 195 31 44 0 0 chr1 204074180 204074225 -38590128 + AT_rich Low_complexity Low_complexity 1 45 0 419 138 0 221 chr1 204074237 204074382 -38589971 + L1PA16 LINE L1 6038 6150 -16 576 236 19 32 chr1 204074386 204074543 -38589810 - MER106B DNA MER1_type -903 156 2 643 313 36 3 chr1 204074847 204075205 -38589148 - L1M4 LINE L1 -3576 3068 2699 2140 120 10 3 chr1 204076548 204076857 -38587496 - AluSq SINE Alu -2 311 1 1260 215 21 37 chr1 204077057 204077382 -38586971 - L1M4 LINE L1 -6214 328 9 392 314 26 20 chr1 204078850 204079003 -38585350 - MIR SINE MIR -103 159 6 234 331 180 0 chr1 204079276 204079415 -38584938 - MIR SINE MIR -97 165 2 34 24 0 0 chr1 204079453 204079494 -38584859 + AT_rich Low_complexity Low_complexity 1 41 0 36 62 0 0 chr1 204079593 204079657 -38584696 + AT_rich Low_complexity Low_complexity 1 64 0 535 263 51 15 chr1 204080361 204080498 -38583855 - L2 LINE L2 -5 3267 3126 2162 106 17 0 chr1 204080962 204081255 -38583098 + AluSx SINE Alu 1 298 -14 381 135 11 73 chr1 204081608 204081786 -38582567 + (TA)n Simple_repeat Simple_repeat 2 168 0 448 254 93 93 chr1 204081832 204082166 -38582187 + L1MEd LINE L1 1025 1358 -5172 250 265 0 0 chr1 204082406 204082474 -38581879 + L1MEd LINE L1 1768 1835 -4705 1160 307 40 29 chr1 204082487 204082940 -38581413 - L2 LINE L2 -33 3280 2823 2517 40 0 3 chr1 204083133 204083430 -38580923 + AluY SINE Alu 1 296 -15 452 318 80 23 chr1 204083431 204083871 -38580482 + L1MEd LINE L1 3698 4162 -2378 2256 113 0 0 chr1 204084087 204084388 -38579965 - AluSx SINE Alu -10 302 2 328 270 24 32 chr1 204085064 204085190 -38579163 + MLT1K LTR MaLR 353 477 -111 572 219 8 0 chr1 204086300 204086419 -38577934 - FLAM_A SINE Alu -9 124 5 295 212 79 111 chr1 204087478 204087667 -38576686 - L1ME3A LINE L1 -23 6147 5965 968 256 221 4 chr1 204087781 204088238 -38576115 - L1ME3A LINE L1 -215 5947 5392 515 270 138 27 chr1 204088241 204088770 -38575583 - L1ME3A LINE L1 -1525 4621 4027 651 238 73 82 chr1 204088772 204089075 -38575278 - L1ME3A LINE L1 -2375 3771 3472 954 114 0 27 chr1 204089145 204089294 -38575059 + MER1B DNA MER1_type 1 145 -152 523 145 0 0 chr1 204089295 204089371 -38574982 + MER1B DNA MER1_type 258 333 0 421 223 60 33 chr1 204089374 204089558 -38574795 - L1ME3A LINE L1 -2750 3396 3208 277 233 198 35 chr1 204089584 204089842 -38574511 - L1ME3A LINE L1 -3252 2894 2595 2097 70 11 3 chr1 204089969 204090256 -38574097 - L1MC/D LINE L1 -429 5725 5415 370 209 7 78 chr1 204090232 204090385 -38573968 - L1M4 LINE L1 -3212 2934 2793 * 1686 128 98 45 chr1 204090385 204090928 -38573425 - MER51A LTR ERV1 0 657 1 396 286 15 8 chr1 204090929 204091062 -38573291 - L1M4 LINE L1 -3351 2795 2662 36 53 0 0 chr1 204091391 204091448 -38572905 + AT_rich Low_complexity Low_complexity 1 57 0 1461 175 0 4 chr1 204092068 204092308 -38572045 + AluJb SINE Alu 1 239 -73 653 297 10 20 chr1 204092422 204092617 -38571736 + MLT1L LTR MaLR 105 297 -318 228 273 125 11 chr1 204092903 204092991 -38571362 - MLT1L LTR MaLR -158 457 360 1733 161 48 27 chr1 204093393 204093729 -38570624 - MER2 DNA MER2_type 0 344 2 1538 167 87 7 chr1 204095940 204096216 -38568137 - AluJo SINE Alu -14 298 1 662 286 48 13 chr1 204096680 204096907 -38567446 - MIR SINE MIR -26 236 2 199 212 17 203 chr1 204098525 204098559 -38565794 + L2 LINE L2 3190 3229 -84 1838 163 14 7 chr1 204098559 204098853 -38565500 + AluJb SINE Alu 3 298 -14 199 212 17 203 chr1 204098853 204098936 -38565417 + L2 LINE L2 3229 3285 -28 444 301 60 101 chr1 204098938 204099336 -38565017 - MLT1J LTR MaLR -5 470 64 1544 151 0 48 chr1 204099349 204099620 -38564733 - AluSx SINE Alu -17 295 38 201 74 0 0 chr1 204099656 204099683 -38564670 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 1403 99 0 0 chr1 204102760 204102961 -38561392 - L1PA13 LINE L1 -3 6160 5960 1590 175 14 45 chr1 204103350 204103641 -38560712 - AluJo SINE Alu -30 282 1 2567 66 0 0 chr1 204103932 204104235 -38560118 + AluY SINE Alu 1 303 -8 487 320 8 0 chr1 204104325 204104453 -38559900 + MIR3 SINE MIR 71 199 -9 426 338 50 15 chr1 204104602 204104803 -38559550 + LTR67 LTR ERVL 82 289 -268 308 211 14 0 chr1 204105008 204105079 -38559274 + LTR67 LTR ERVL 478 549 -8 870 222 32 16 chr1 204105701 204105886 -38558467 + MER5A DNA MER1_type 2 189 0 253 318 0 0 chr1 204105896 204105959 -38558394 + MER58 DNA MER1_type 4 66 -275 247 315 11 11 chr1 204106147 204106239 -38558114 + MLT1J2 LTR MaLR 357 448 -2 2290 156 35 24 chr1 204106303 204106726 -38557627 + MSTA LTR MaLR 1 428 0 1343 228 25 0 chr1 204106782 204107058 -38557295 - LTR16A LTR ERVL 0 450 168 2582 104 5 3 chr1 204107061 204107435 -38556918 - THE1C LTR MaLR 0 375 1 2731 96 2 18 chr1 204107435 204107832 -38556521 - THE1C-int LTR MaLR 0 1580 1190 550 203 51 25 chr1 204107832 204107950 -38556403 - LTR16A LTR ERVL -274 176 56 340 120 0 0 chr1 204108001 204108051 -38556302 - THE1C LTR MaLR -325 50 1 289 140 0 0 chr1 204108051 204108101 -38556252 - THE1C-int LTR MaLR 0 1580 1531 501 232 180 16 chr1 204108281 204108604 -38555749 + HAL1b LINE L1 971 1346 -2 462 342 134 29 chr1 204108875 204109322 -38555031 - L2 LINE L2 -1206 2108 1615 515 329 128 64 chr1 204109351 204109758 -38554595 - L2 LINE L2 -2230 1084 704 6476 58 11 21 chr1 204109758 204109962 -38554391 + L1PA7 LINE L1 5284 5488 -666 2076 134 3 3 chr1 204109962 204110269 -38554084 + AluSc SINE Alu 3 309 0 6476 58 11 21 chr1 204110269 204110938 -38553415 + L1PA7 LINE L1 5488 6149 -5 515 329 128 64 chr1 204110938 204111312 -38553041 - L2 LINE L2 -2610 704 253 2281 91 3 0 chr1 204111414 204111699 -38552654 - AluSp SINE Alu -19 294 9 2084 89 72 7 chr1 204111753 204112116 -38552237 - LTR7 LTR ERV1 -2 448 1 2627 109 14 12 chr1 204112124 204112538 -38551815 - HERVH LTR ERV1 -16 7697 7283 7119 108 6 1 chr1 204112542 204113575 -38550778 - HERVH LTR ERV1 -2693 5020 3993 2283 123 35 3 chr1 204113586 204113953 -38550400 - HERVH LTR ERV1 -3978 3735 3357 13743 112 4 27 chr1 204113953 204116523 -38547830 - HERVH LTR ERV1 -4883 2830 1 1978 91 104 8 chr1 204116525 204116885 -38547468 - LTR7 LTR ERV1 -2 448 1 1888 137 3 28 chr1 204117007 204117320 -38547033 - AluSx SINE Alu 0 310 5 23 33 0 0 chr1 204117691 204117721 -38546632 + AT_rich Low_complexity Low_complexity 1 30 0 1877 110 4 8 chr1 204119148 204119411 -38544942 - AluSq SINE Alu -6 307 46 209 216 34 102 chr1 204120500 204120588 -38543765 + MIR SINE MIR 136 217 -45 391 253 40 0 chr1 204120932 204121031 -38543322 + MER7A DNA MER2_type 1 101 -245 631 132 174 0 chr1 204121034 204121155 -38543198 - AluJb SINE Alu -3 309 168 1383 119 150 0 chr1 204121155 204121382 -38542971 + MER7A DNA MER2_type 85 345 -1 870 241 69 25 chr1 204121683 204121928 -38542425 + MIR SINE MIR 7 262 0 2552 69 0 0 chr1 204122190 204122496 -38541857 + AluY SINE Alu 1 306 -5 2525 7 3 3 chr1 204122767 204123049 -38541304 - AluYa5 SINE Alu -29 282 1 1009 261 40 4 chr1 204123074 204123296 -38541057 - MLT1I LTR MaLR -67 342 113 666 223 112 20 chr1 204123296 204123493 -38540860 - MER58C DNA MER1_type 0 215 1 22 0 0 0 chr1 204123782 204123804 -38540549 + AT_rich Low_complexity Low_complexity 1 22 0 230 319 28 0 chr1 204123903 204123975 -38540378 + HAL1 LINE L1 4 77 -2430 565 267 88 63 chr1 204124343 204124788 -38539565 + HAL1 LINE L1 657 1112 -1395 1100 177 16 0 chr1 204124801 204124993 -38539360 + MER58A DNA MER1_type 27 221 -3 721 235 126 40 chr1 204125012 204125441 -38538912 + HAL1 LINE L1 1113 1578 -929 358 189 21 53 chr1 204125448 204125543 -38538810 - MIR SINE MIR -50 212 121 2106 153 35 0 chr1 204125829 204126196 -38538157 - L1PA16 LINE L1 -1 6165 5786 314 278 36 22 chr1 204126336 204126499 -38537854 + MLT2E LTR ERVL 380 625 -3 2015 141 0 0 chr1 204126692 204126991 -38537362 + AluSc SINE Alu 1 299 -10 612 286 132 9 chr1 204127023 204127236 -38537117 - MIR SINE MIR -21 241 3 288 245 31 0 chr1 204128164 204128251 -38536102 - MLT1L LTR MaLR -305 141 69 25 0 0 0 chr1 204128478 204128503 -38535850 + AT_rich Low_complexity Low_complexity 1 25 0 2122 88 7 14 chr1 204128513 204128810 -38535543 + AluSq SINE Alu 1 295 -18 1998 147 0 13 chr1 204128860 204129160 -38535193 + AluJo SINE Alu 1 296 -16 382 360 34 11 chr1 204129426 204129604 -38534749 + MER5A DNA MER1_type 8 189 0 264 254 0 0 chr1 204129923 204129986 -38534367 - MLT1K LTR MaLR 0 588 526 409 255 155 29 chr1 204130133 204130349 -38534004 - MLT1K LTR MaLR -358 230 2 393 286 121 14 chr1 204130565 204130705 -38533648 - MER5B DNA MER1_type 0 178 24 21 0 0 0 chr1 204131019 204131040 -38533313 + AT_rich Low_complexity Low_complexity 1 21 0 278 258 0 0 chr1 204131876 204131942 -38532411 + MIR SINE MIR 193 258 -4 860 242 79 9 chr1 204132317 204132544 -38531809 - L1MC4 LINE L1 -1350 6692 6450 803 49 0 0 chr1 204133161 204133263 -38531090 - L1PA13 LINE L1 -3 6160 6059 333 0 0 0 chr1 204133337 204133374 -38530979 + (TG)n Simple_repeat Simple_repeat 2 38 0 853 187 37 27 chr1 204134628 204134815 -38529538 - LTR24 LTR ERV1 -43 424 236 208 0 0 0 chr1 204134834 204134857 -38529496 + (TTTA)n Simple_repeat Simple_repeat 2 156 0 227 152 0 0 chr1 204134857 204134890 -38529463 - Alu SINE Alu -18 282 250 1900 138 0 14 chr1 204134890 204135172 -38529181 - AluJb SINE Alu -30 282 5 2544 259 40 20 chr1 204135556 204135741 -38528612 - L1MEc LINE L1 -5026 1370 1190 2030 161 0 3 chr1 204135741 204136051 -38528302 - AluSx SINE Alu -3 309 1 2544 259 40 20 chr1 204136051 204136765 -38527588 - L1MEc LINE L1 -5206 1190 453 517 319 94 46 chr1 204137326 204137806 -38526547 - L2 LINE L2 -2285 1029 527 299 310 10 107 chr1 204138232 204138429 -38525924 + MIR3 SINE MIR 16 193 -15 2380 90 7 0 chr1 204138447 204138748 -38525605 - AluSq SINE Alu -10 303 1 26 50 0 0 chr1 204138750 204138790 -38525563 + AT_rich Low_complexity Low_complexity 1 40 0 2657 99 6 3 chr1 204138854 204139217 -38525136 - THE1B LTR MaLR 0 364 1 1389 137 120 96 chr1 204139846 204140138 -38524215 - AluSg SINE Alu -11 299 1 4308 151 58 4 chr1 204140252 204141058 -38523295 - L1MB7 LINE L1 -18 6664 5815 4326 207 36 39 chr1 204141088 204142282 -38522071 - L1MB7 LINE L1 -790 5854 4664 1444 233 127 19 chr1 204142312 204142728 -38521625 - L1MB7 LINE L1 -5549 993 533 559 242 27 20 chr1 204143016 204143165 -38521188 + MIR SINE MIR 102 251 -11 2157 120 10 3 chr1 204145219 204145528 -38518825 - AluSq SINE Alu -2 311 1 4276 166 68 51 chr1 204195634 204196858 -38467495 - HERVH LTR ERV1 -6156 1557 1 1540 151 146 67 chr1 204196858 204197275 -38467078 - LTR7 LTR ERV1 0 450 1 363 283 0 72 chr1 204197333 204197471 -38466882 + MLT1-int LTR MaLR 414 541 -830 348 87 0 0 chr1 204197798 204197844 -38466509 - Alu SINE Alu -254 46 1 207 274 0 83 chr1 204198126 204198210 -38466143 + MER5A DNA MER1_type 111 187 -2 2212 122 0 0 chr1 204199226 204199537 -38464816 + AluSx SINE Alu 1 311 -1 1980 158 0 0 chr1 204200426 204200723 -38463630 - AluJb SINE Alu -15 297 1 1058 273 109 9 chr1 204201550 204201994 -38462359 + MLT1G1 LTR MaLR 27 595 0 522 233 13 40 chr1 204201994 204202144 -38462209 + MLT1G1-int LTR MaLR 1 146 -1225 334 341 80 19 chr1 204202122 204202386 -38461967 + MLT1G1-int LTR MaLR 272 551 -820 * 1518 152 87 36 chr1 204202585 204202861 -38461492 - AluJb SINE Alu -22 290 1 411 246 72 91 chr1 204203296 204203572 -38460781 + MLT1G1-int LTR MaLR 1101 1371 0 1590 333 89 46 chr1 204203572 204204142 -38460211 + MLT1G1 LTR MaLR 1 595 0 1204 220 100 8 chr1 204204142 204204501 -38459852 + L1ME2 LINE L1 5757 6148 -16 339 244 19 64 chr1 204204559 204204715 -38459638 + L1MC5 LINE L1 7783 7931 -30 583 272 55 30 chr1 204204715 204204950 -38459403 - MARNA DNA Mariner -322 264 24 2494 78 0 0 chr1 204204989 204205298 -38459055 - AluY SINE Alu -2 309 1 211 146 24 0 chr1 204205370 204205411 -38458942 + A-rich Low_complexity Low_complexity 6 47 0 403 354 118 4 chr1 204205722 204205985 -38458368 + L2 LINE L2 2225 2517 -797 2065 114 17 7 chr1 204206000 204206297 -38458056 - AluSx SINE Alu -12 300 1 23 0 0 0 chr1 204206388 204206411 -38457942 + GC_rich Low_complexity Low_complexity 1 23 0 201 376 64 13 chr1 204206646 204206803 -38457550 + L2 LINE L2 2717 2881 -433 339 374 43 7 chr1 204207066 204207205 -38457148 + L2 LINE L2 3125 3268 -4 21 57 0 0 chr1 204207879 204207914 -38456439 + AT_rich Low_complexity Low_complexity 1 35 0 231 189 167 22 chr1 204207926 204208016 -38456337 + Tigger7 DNA MER2_type 309 411 -322 2046 160 25 27 chr1 204208134 204208541 -38455812 + L1MC3 LINE L1 7380 7785 0 264 267 209 9 chr1 204208900 204209005 -38455348 - L2 LINE L2 -4 3309 3184 2263 110 3 0 chr1 204209222 204209523 -38454830 + AluSx SINE Alu 1 302 -10 1177 234 130 23 chr1 204210108 204210492 -38453861 - MLT1J2 LTR MaLR -8 442 18 1568 171 39 30 chr1 204210782 204211087 -38453266 - AluJo SINE Alu -4 308 1 371 268 135 65 chr1 204211818 204212054 -38452299 - MLT1J2 LTR MaLR -14 497 189 1075 175 0 0 chr1 204212069 204212240 -38452113 - AluJb SINE Alu -5 307 137 545 231 38 56 chr1 204212246 204212267 -38452086 - MLT1J1 LTR MaLR -232 177 157 1800 166 3 3 chr1 204212267 204212562 -38451791 + AluJo SINE Alu 1 295 -17 545 231 38 56 chr1 204212562 204212727 -38451626 - MLT1J1 LTR MaLR -252 157 1 23 54 0 0 chr1 204212885 204212922 -38451431 + AT_rich Low_complexity Low_complexity 1 37 0 24758 169 45 22 chr1 204213216 204218270 -38446083 + HERVH LTR ERV1 2544 7713 0 1445 167 212 21 chr1 204218270 204218648 -38445705 + LTR7 LTR ERV1 1 450 0 511 258 132 6 chr1 204218828 204218987 -38445366 - MLT1H1 LTR MaLR 0 590 412 4870 54 20 5 chr1 204219036 204220052 -38444301 - MER11A LTR ERVK 0 1266 1 1221 250 19 8 chr1 204220052 204220301 -38444052 - MLT1H1 LTR MaLR -303 252 1 2363 173 145 32 chr1 204220572 204221108 -38443245 + MLT1E3 LTR MaLR 2 605 -19 1957 189 46 3 chr1 204221108 204221457 -38442896 - MLT1A1 LTR MaLR -1 364 1 2363 173 145 32 chr1 204221457 204221480 -38442873 + MLT1E3 LTR MaLR 605 624 0 255 77 51 0 chr1 204222041 204222080 -38442273 + MLT1E3 LTR MaLR 396 436 -188 225 0 0 0 chr1 204222164 204222189 -38442164 + (TA)n Simple_repeat Simple_repeat 1 25 0 2346 88 3 0 chr1 204222765 204223060 -38441293 - AluSx SINE Alu -16 296 1 400 213 0 0 chr1 204223832 204223924 -38440429 + L1M4 LINE L1 2384 2475 -3671 452 302 22 0 chr1 204223945 204224084 -38440269 - L1ME LINE L1 -492 5629 5488 21 0 0 0 chr1 204224168 204224189 -38440164 + AT_rich Low_complexity Low_complexity 1 21 0 186 133 0 0 chr1 204224317 204224347 -38440006 + (TG)n Simple_repeat Simple_repeat 1 30 0 1573 182 25 14 chr1 204224426 204224712 -38439641 - AluJb SINE Alu -23 289 1 256 312 92 9 chr1 204224727 204224836 -38439517 + L2 LINE L2 3141 3258 -14 200 200 0 0 chr1 204224838 204224878 -38439475 + GA-rich Low_complexity Low_complexity 1 40 0 1331 151 91 17 chr1 204225013 204225245 -38439108 + AluSg SINE Alu 1 249 -61 586 241 54 24 chr1 204225677 204225843 -38438510 - MIR3 SINE MIR -7 201 31 260 282 92 14 chr1 204226927 204226942 -38437411 - L1MA10 LINE L1 0 6334 6320 3293 204 39 45 chr1 204226942 204227257 -38437096 - L1ME1 LINE L1 -9 6157 5842 2209 116 0 0 chr1 204227257 204227550 -38436803 - AluSc SINE Alu -16 293 1 3293 204 39 45 chr1 204227550 204228060 -38436293 - L1ME1 LINE L1 -324 5842 5330 2053 118 10 26 chr1 204228060 204228366 -38435987 - AluSx SINE Alu -11 301 1 3293 204 39 45 chr1 204228366 204228720 -38435633 - L1ME1 LINE L1 -836 5330 4777 2430 76 0 3 chr1 204228720 204229024 -38435329 - AluY SINE Alu -8 303 1 3293 204 39 45 chr1 204229024 204229100 -38435253 - L1ME1 LINE L1 -1389 4777 4702 1599 148 53 40 chr1 204229183 204229194 -38435159 + THE1C LTR MaLR 36 45 -330 2063 148 0 0 chr1 204229194 204229505 -38434848 + AluSx SINE Alu 1 311 -1 1599 148 53 40 chr1 204229505 204229830 -38434523 + THE1C LTR MaLR 45 375 0 1724 162 61 35 chr1 204229984 204230340 -38434013 + L1ME1 LINE L1 5579 5867 -299 1607 164 25 14 chr1 204230340 204230615 -38433738 + AluJb SINE Alu 1 278 -34 1724 162 61 35 chr1 204230615 204230672 -38433681 + L1ME1 LINE L1 5867 5921 -245 745 129 19 13 chr1 204230684 204230839 -38433514 + GA-rich Low_complexity Low_complexity 2 157 0 795 234 52 13 chr1 204230839 204231070 -38433283 + L1MB8 LINE L1 5936 6175 -3 385 276 153 15 chr1 204231259 204231462 -38432891 + MIR SINE MIR 2 232 -30 1035 150 49 64 chr1 204231694 204231911 -38432442 + LTR62 LTR ERVK 1 220 -499 2293 44 4 0 chr1 204231911 204232183 -38432170 + AluY SINE Alu 39 311 0 1035 150 49 64 chr1 204232183 204232290 -38432063 + LTR62 LTR ERVK 220 327 -392 3007 108 21 5 chr1 204232290 204232717 -38431636 + MER57B LTR ERV1 1 434 0 1035 150 49 64 chr1 204232717 204232817 -38431536 + LTR62 LTR ERVK 327 466 -253 863 153 0 0 chr1 204232817 204232948 -38431405 - FLAM_C SINE Alu -12 131 1 1219 213 43 8 chr1 204232949 204233184 -38431169 + LTR62 LTR ERVK 456 698 -21 3734 124 56 15 chr1 204233374 204233981 -38430372 + MER39B LTR ERV1 22 653 0 34 84 0 0 chr1 204234219 204234302 -38430051 + AT_rich Low_complexity Low_complexity 1 83 0 660 312 41 35 chr1 204234964 204235304 -38429049 + HAL1 LINE L1 1 342 -2165 1195 76 0 0 chr1 204235307 204235451 -38428902 + AluSq/x SINE Alu 1 144 -168 1937 152 0 3 chr1 204235452 204235755 -38428598 + AluSx SINE Alu 1 302 -10 1026 292 102 28 chr1 204235756 204236020 -38428333 + HAL1 LINE L1 334 577 -1930 2296 231 46 38 chr1 204236020 204236625 -38427728 + LTR9 LTR ERV1 1 610 -2 1026 292 102 28 chr1 204236625 204236822 -38427531 + HAL1 LINE L1 577 829 -1678 * 1507 239 78 30 chr1 204236817 204237357 -38426996 + HAL1 LINE L1 1089 1654 -853 473 252 4 142 chr1 204237377 204237434 -38426919 - LTR41 LTR ERVL -38 735 672 1812 172 0 7 chr1 204237434 204237724 -38426629 - AluJb SINE Alu -24 288 1 473 252 4 142 chr1 204237724 204237940 -38426413 - LTR41 LTR ERVL -101 672 500 765 186 98 55 chr1 204238139 204238322 -38426031 - LTR41 LTR ERVL -582 191 1 1774 246 48 96 chr1 204238322 204238592 -38425761 + HAL1 LINE L1 1649 1930 -577 501 115 0 0 chr1 204238592 204238670 -38425683 + (TG)n Simple_repeat Simple_repeat 1 78 0 1774 246 48 96 chr1 204238670 204239297 -38425056 + HAL1 LINE L1 1930 2503 -4 1905 141 10 13 chr1 204239608 204239729 -38424624 + AluJb SINE Alu 1 121 -438 243 0 0 0 chr1 204239729 204239756 -38424597 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1905 141 10 13 chr1 204239756 204239971 -38424382 + AluJb SINE Alu 121 335 -224 1286 28 17 17 chr1 204239971 204240151 -38424202 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1905 141 10 13 chr1 204240151 204240194 -38424159 + AluJb SINE Alu 335 559 0 942 180 48 0 chr1 204240396 204240563 -38423790 + MLT1C LTR MaLR 1 175 -292 249 286 60 24 chr1 204241708 204241792 -38422561 - MIR3 SINE MIR -7 201 115 1975 152 44 39 chr1 204241855 204242217 -38422136 + THE1B LTR MaLR 1 364 0 1578 245 86 42 chr1 204242864 204243530 -38420823 + L1MC4 LINE L1 6926 7620 -422 697 252 142 14 chr1 204245639 204245938 -38418415 + L2 LINE L2 2724 3060 -253 2791 217 21 34 chr1 204245943 204246557 -38417796 - MER82 DNA MER2_type 0 653 48 834 208 16 67 chr1 204246580 204246835 -38417518 + L2 LINE L2 3072 3313 0 1000 70 78 0 chr1 204247295 204247424 -38416929 - MER85 DNA T2_type 0 139 1 485 285 76 6 chr1 204247708 204247866 -38416487 - MIR SINE MIR -73 189 21 243 227 206 21 chr1 204248139 204248236 -38416117 + MIR SINE MIR 32 146 -62 324 297 79 0 chr1 204248372 204248473 -38415880 + L2 LINE L2 3195 3303 -10 388 316 148 7 chr1 204250830 204250985 -38413368 - MER5A DNA MER1_type 0 189 13 1750 160 0 48 chr1 204252581 204252919 -38411434 + AluJo SINE Alu 1 312 0 948 173 0 0 chr1 204253287 204253443 -38410910 + AluJb SINE Alu 137 292 -20 291 233 0 55 chr1 204253495 204253568 -38410785 - L2 LINE L2 0 3313 3245 5504 140 53 7 chr1 204254263 204255125 -38409228 + MER4D LTR ERV1 1 902 -1 1016 239 13 4 chr1 204255297 204255523 -38408830 + MIR SINE MIR 1 228 -34 543 159 122 0 chr1 204255783 204255908 -38408445 + L1MA8 LINE L1 6017 6160 -131 423 121 69 26 chr1 204255908 204256024 -38408329 + Charlie1 DNA MER1_type 2511 2631 -130 293 313 0 21 chr1 204256679 204256775 -38407578 - L2 LINE L2 -32 3281 3188 597 183 137 46 chr1 204256823 204256976 -38407377 - MIR SINE MIR -88 174 8 1700 167 0 30 chr1 204257599 204257738 -38406615 + AluJo SINE Alu 3 145 -167 1240 83 60 0 chr1 204257738 204257906 -38406447 + L1PA8 LINE L1 5993 6170 -2 1700 167 0 30 chr1 204257906 204258065 -38406288 + AluJo SINE Alu 145 292 -20 387 245 38 38 chr1 204258194 204258300 -38406053 - MIR SINE MIR -51 211 106 465 256 55 12 chr1 204258726 204258862 -38405491 - MIR SINE MIR -70 192 55 23 0 0 0 chr1 204260962 204260985 -38403368 + AT_rich Low_complexity Low_complexity 1 23 0 234 270 23 6 chr1 204261555 204261729 -38402624 + (CATTG)n Simple_repeat Simple_repeat 2 178 0 * 339 243 40 0 chr1 204261653 204261826 -38402527 + (CATTC)n Simple_repeat Simple_repeat 1 180 0 607 138 55 18 chr1 204262124 204262233 -38402120 + FLAM_A SINE Alu 20 132 -10 337 314 121 0 chr1 204262535 204262675 -38401678 - MIR SINE MIR -6 256 100 1186 143 50 93 chr1 204263577 204263857 -38400496 + L1MA2 LINE L1 6035 6302 -2 3397 180 51 20 chr1 204263887 204264591 -38399762 + L1MB8 LINE L1 5453 6178 0 2092 116 0 16 chr1 204266140 204266443 -38397910 + AluSc SINE Alu 1 298 -11 206 326 39 23 chr1 204266930 204267059 -38397294 + L2 LINE L2 2906 3036 -236 337 328 101 8 chr1 204267059 204267178 -38397175 - L2 LINE L2 -2 3270 3141 724 296 51 63 chr1 204267257 204267421 -38396932 - L2 LINE L2 0 3313 3149 1176 215 166 90 chr1 204267421 204267974 -38396379 + MLT1G1 LTR MaLR 1 595 0 724 296 51 63 chr1 204267974 204268144 -38396209 - L2 LINE L2 -164 3149 2983 213 311 84 67 chr1 204268273 204268392 -38395961 + L2 LINE L2 3193 3313 0 307 339 25 25 chr1 204269313 204269431 -38394922 + L2 LINE L2 3155 3272 0 216 339 68 7 chr1 204269448 204269622 -38394731 - MIR SINE MIR -52 210 25 642 194 36 7 chr1 204272038 204272177 -38392176 - MIR SINE MIR -91 171 29 2284 97 0 3 chr1 204273180 204273470 -38390883 - AluY SINE Alu -22 289 1 2832 91 11 0 chr1 204273536 204273887 -38390466 + THE1A LTR MaLR 1 355 0 802 179 109 16 chr1 204275154 204275338 -38389015 + L1MC5 LINE L1 7694 7894 -67 1459 214 0 0 chr1 204275900 204276171 -38388182 + AluJo SINE Alu 38 308 -4 2133 51 0 19 chr1 204276633 204276890 -38387463 - AluY SINE Alu -8 303 52 414 121 0 0 chr1 204277177 204277235 -38387118 + AluS SINE Alu 233 290 -22 22 56 0 0 chr1 204277235 204277271 -38387082 + AT_rich Low_complexity Low_complexity 1 36 0 2003 115 7 0 chr1 204277450 204277729 -38386624 - AluSg SINE Alu -29 281 1 271 322 0 0 chr1 204277739 204277829 -38386524 + L2 LINE L2 2224 2313 -1001 2109 133 0 7 chr1 204279361 204279663 -38384690 + AluSx SINE Alu 2 301 -11 458 297 21 68 chr1 204280473 204280665 -38383688 - MIR SINE MIR -54 208 26 764 332 93 16 chr1 204280720 204281238 -38383115 - L2 LINE L2 0 3313 2748 1177 54 14 0 chr1 204281717 204281864 -38382489 + L1PA4 LINE L1 6006 6154 -1 461 252 149 78 chr1 204282033 204282355 -38381998 + L1ME4a LINE L1 5522 5866 -255 2305 116 0 0 chr1 204282604 204282906 -38381447 + AluSg SINE Alu 1 302 -8 800 176 0 16 chr1 204282929 204283054 -38381299 + FLAM_C SINE Alu 2 124 -19 267 98 0 0 chr1 204283054 204283066 -38381287 + (TG)n Simple_repeat Simple_repeat 2 13 -29 18406 28 0 0 chr1 204283066 204285888 -38378465 + L1PA2 LINE L1 3323 6151 -4 267 98 0 0 chr1 204285888 204285916 -38378437 + (TG)n Simple_repeat Simple_repeat 12 42 0 234 239 0 0 chr1 204285901 204285972 -38378381 + (TA)n Simple_repeat Simple_repeat 2 72 0 * 498 213 84 39 chr1 204286713 204286868 -38377485 + LTR67 LTR ERVL 394 555 -2 1086 313 81 12 chr1 204287138 204287544 -38376809 + LTR16A LTR ERVL 16 449 -1 423 309 64 62 chr1 204288126 204288595 -38375758 + ERVL LTR ERVL 974 1443 -4321 714 197 39 51 chr1 204288795 204288973 -38375380 + MIR SINE MIR 87 262 0 256 171 0 0 chr1 204289066 204289107 -38375246 + ERVL LTR ERVL 1743 1783 -3871 317 293 60 45 chr1 204289282 204289415 -38374938 + ERVL LTR ERVL 2908 3042 -2612 1775 301 118 11 chr1 204289421 204289546 -38374807 + ERVL LTR ERVL 3380 3490 -2274 201 39 0 0 chr1 204289546 204289572 -38374781 + (CA)n Simple_repeat Simple_repeat 2 27 0 1775 301 118 11 chr1 204289572 204290545 -38373808 + ERVL LTR ERVL 3490 4635 -1129 1309 292 46 20 chr1 204290607 204291063 -38373290 + ERVL LTR ERVL 4721 5188 -576 5497 152 34 8 chr1 204291214 204292869 -38371484 + L1MA4 LINE L1 4591 6289 -11 311 348 132 17 chr1 204295252 204295600 -38368753 + L2 LINE L2 1889 2276 -1038 360 186 0 0 chr1 204295602 204295661 -38368692 + MER2 DNA MER2_type 14 72 -273 422 194 108 0 chr1 204295668 204295761 -38368592 + MER94 DNA DNA 32 134 0 467 277 79 55 chr1 204296170 204296499 -38367854 + L1MEd LINE L1 2 338 -5781 749 281 88 33 chr1 204296513 204296912 -38367441 + L1MEd LINE L1 510 930 -5189 1308 247 64 126 chr1 204296956 204298523 -38365830 + L1MC4 LINE L1 6224 7813 -229 1877 142 3 11 chr1 204298765 204299047 -38365306 - AluJo SINE Alu -32 280 1 272 305 123 34 chr1 204299051 204299287 -38365066 + L1MC4 LINE L1 7326 7667 -375 540 0 0 0 chr1 204299395 204299455 -38364898 + (TA)n Simple_repeat Simple_repeat 1 60 0 16731 154 22 5 chr1 204299603 204303305 -38361048 + L1PA13 LINE L1 2304 6161 -2 6451 140 51 14 chr1 204303307 204304805 -38359548 + L1MA5A LINE L1 4233 5819 -478 2277 115 3 0 chr1 204304805 204305109 -38359244 + AluSx SINE Alu 1 305 -7 6451 140 51 14 chr1 204305109 204305604 -38358749 + L1MA5A LINE L1 5819 6294 -3 523 219 60 93 chr1 204305671 204305997 -38358356 + L1ME3A LINE L1 5025 5346 -888 2118 113 11 0 chr1 204305997 204306281 -38358072 + AluSx SINE Alu 1 287 -25 523 219 60 93 chr1 204306281 204306418 -38357935 + L1ME3A LINE L1 5346 5486 -748 1737 118 7 0 chr1 204306418 204306688 -38357665 - L1 LINE L1 -1317 4829 4558 278 289 105 18 chr1 204306683 204306797 -38357556 + L1ME3A LINE L1 5485 5608 -558 * 230 214 0 71 chr1 204306908 204306992 -38357361 - MER112 DNA MER1_type -88 172 95 1018 58 0 0 chr1 204307077 204307197 -38357156 - L1PA3 LINE L1 -3 6152 6033 268 200 0 0 chr1 204307197 204307247 -38357106 - MER112 DNA MER1_type -207 53 4 595 263 72 30 chr1 204307256 204307518 -38356835 + L1ME3A LINE L1 5653 5925 -245 332 294 75 20 chr1 204307717 204307863 -38356490 + MLT1L LTR MaLR 462 615 0 446 248 28 50 chr1 204308582 204308699 -38355654 - MIR SINE MIR -116 146 31 2124 134 0 0 chr1 204308699 204308991 -38355362 - AluSx SINE Alu -20 292 1 446 248 28 50 chr1 204308991 204309014 -38355339 - MIR SINE MIR -231 31 9 2176 112 7 7 chr1 204310211 204310515 -38353838 + AluSx SINE Alu 5 308 -4 881 204 19 5 chr1 204310515 204310721 -38353632 - L1M4 LINE L1 -1569 4577 4369 437 262 223 20 chr1 204310721 204310923 -38353430 + MIR SINE MIR 19 261 -1 2020 161 0 0 chr1 204311783 204312082 -38352271 + AluSx SINE Alu 1 299 -13 266 226 131 51 chr1 204312462 204312599 -38351754 + L1ME4a LINE L1 5671 5818 -303 313 195 23 46 chr1 204312612 204312699 -38351654 + L1ME4a LINE L1 5956 6040 -81 2024 143 0 3 chr1 204312713 204313006 -38351347 - AluSx SINE Alu -20 292 1 2250 170 6 6 chr1 204313374 204313739 -38350614 + MLT1A1 LTR MaLR 1 365 0 6238 205 78 82 chr1 204313741 204315482 -38348871 + MLT1A1-int LTR MaLR 2 1735 0 1964 188 17 8 chr1 204315492 204315844 -38348509 + MLT1A1 LTR MaLR 11 365 0 1624 176 35 7 chr1 204315986 204316270 -38348083 - AluJb SINE Alu -20 292 1 2359 89 7 0 chr1 204316916 204317218 -38347135 + AluSx SINE Alu 1 304 -8 2307 77 0 13 chr1 204317386 204317684 -38346669 + AluY SINE Alu 1 294 -17 443 207 74 44 chr1 204318488 204318576 -38345777 + MIR SINE MIR 105 200 -62 1737 174 11 17 chr1 204318576 204318863 -38345490 + AluJo SINE Alu 1 285 -27 443 207 74 44 chr1 204318863 204318909 -38345444 + MIR SINE MIR 200 243 -19 2046 137 0 0 chr1 204319259 204319544 -38344809 + AluSx SINE Alu 1 285 -27 674 254 54 15 chr1 204319583 204319788 -38344565 - MIR SINE MIR -43 219 7 1819 147 14 3 chr1 204321064 204321350 -38343003 + AluSx SINE Alu 14 302 -10 813 200 27 0 chr1 204321652 204321802 -38342551 - MER5A DNA MER1_type -35 154 1 235 292 15 0 chr1 204322185 204322250 -38342103 + (TG)n Simple_repeat Simple_repeat 2 67 0 25 0 0 0 chr1 204323785 204323810 -38340543 + AT_rich Low_complexity Low_complexity 1 25 0 337 226 87 26 chr1 204323906 204324021 -38340332 + L1ME4a LINE L1 5956 6077 -44 392 275 71 28 chr1 204324671 204324858 -38339495 - MIR SINE MIR -50 212 30 195 100 0 0 chr1 204324926 204324956 -38339397 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1927 134 3 7 chr1 204326327 204326610 -38337743 + AluSx SINE Alu 1 282 -30 273 172 5 19 chr1 204327564 204327634 -38336719 + L1MEc LINE L1 1495 1618 -958 483 269 29 58 chr1 204328077 204328215 -38336138 + MIR SINE MIR 7 141 -121 1979 105 11 0 chr1 204328215 204328482 -38335871 + AluSx SINE Alu 28 297 -15 483 269 29 58 chr1 204328482 204328514 -38335839 + MIR SINE MIR 141 172 -90 769 150 0 16 chr1 204329631 204329758 -38334595 + AluSp/q SINE Alu 189 313 0 1599 183 83 17 chr1 204330544 204330905 -38333448 - L1MD2 LINE L1 -22 6337 5953 2704 172 15 4 chr1 204330908 204331378 -38332975 - L1MD2 LINE L1 -468 5891 5417 264 293 122 73 chr1 204331662 204331867 -38332486 + L2 LINE L2 3057 3271 -1 236 100 25 0 chr1 204332716 204332756 -38331597 + (TA)n Simple_repeat Simple_repeat 1 41 0 315 0 0 0 chr1 204333477 204333512 -38330841 + (A)n Simple_repeat Simple_repeat 1 35 0 247 260 75 85 chr1 204334135 204334335 -38330018 + L2 LINE L2 2992 3189 -83 327 328 81 10 chr1 204334513 204334715 -38329638 - MIR SINE MIR -9 253 39 614 149 0 0 chr1 204335008 204335095 -38329258 + AluJ/FLAM SINE Alu 3 89 -223 22 0 0 0 chr1 204335108 204335130 -38329223 + AT_rich Low_complexity Low_complexity 1 22 0 765 179 37 25 chr1 204335202 204335364 -38328989 + MER106B DNA MER1_type 896 1059 0 1812 157 7 23 chr1 204335573 204335873 -38328480 + AluJo SINE Alu 1 295 -17 622 252 107 19 chr1 204335893 204336460 -38327893 - L1ME LINE L1 -552 5687 5059 5276 90 7 0 chr1 204336555 204337234 -38327119 + L1PB2 LINE L1 5468 6151 0 301 246 120 112 chr1 204337274 204337713 -38326640 - L1MEc LINE L1 -3649 2566 2166 2073 122 111 3 chr1 204337809 204337951 -38326402 + MSTC LTR MaLR 2 127 -301 1877 168 149 11 chr1 204337951 204338327 -38326026 - MSTA LTR MaLR 0 428 1 2073 122 111 3 chr1 204338327 204338527 -38325826 + MSTC LTR MaLR 127 381 -47 419 73 8 202 chr1 204338567 204338691 -38325662 + MSTC LTR MaLR 328 427 -1 373 42 62 0 chr1 204340442 204340490 -38323863 - MADE1 DNA Mariner -29 51 1 332 332 7 5 chr1 204340576 204340699 -38323654 - MIR SINE MIR -65 143 49 2897 10 0 0 chr1 204341204 204341515 -38322838 + AluYa5 SINE Alu 1 311 0 478 226 184 18 chr1 204341738 204341906 -38322447 + MIR SINE MIR 9 204 -58 201 74 0 0 chr1 204342468 204342495 -38321858 + (A)n Simple_repeat Simple_repeat 1 27 0 245 194 265 20 chr1 204343187 204343285 -38321068 + MER5A DNA MER1_type 45 166 -23 * 490 206 33 0 chr1 204343210 204343302 -38321051 - MER5A DNA MER1_type -77 112 18 2130 152 75 30 chr1 204343946 204344348 -38320005 - L1MC1 LINE L1 0 6333 5914 2071 122 7 0 chr1 204344398 204344684 -38319669 - AluSx SINE Alu -24 288 1 349 279 72 9 chr1 204344726 204344837 -38319516 - MIR SINE MIR -114 148 31 407 268 64 32 chr1 204345264 204345421 -38318932 + MIR3 SINE MIR 20 181 -27 2063 159 0 0 chr1 204346161 204346463 -38317890 + AluSx SINE Alu 1 302 -10 248 271 84 81 chr1 204346656 204346988 -38317365 + L2 LINE L2 2633 2965 -349 2159 137 3 0 chr1 204347177 204347483 -38316870 - AluSx SINE Alu -5 307 1 219 317 125 50 chr1 204347513 204347633 -38316720 + L2 LINE L2 3138 3266 -6 865 148 44 33 chr1 204349024 204349206 -38315147 + L1MA4 LINE L1 6115 6298 -2 683 247 37 6 chr1 204351281 204351443 -38312910 + L1MDa LINE L1 16 182 -6358 859 188 38 116 chr1 204351516 204351577 -38312776 + L1MDa LINE L1 1344 1408 -5132 1745 132 14 59 chr1 204351577 204351865 -38312488 + AluSx SINE Alu 1 275 -37 859 188 38 116 chr1 204351865 204352148 -38312205 + L1MDa LINE L1 1408 1661 -4879 * 921 253 17 17 chr1 204352142 204352438 -38311915 + L1MDa LINE L1 2554 2849 -3691 865 241 118 11 chr1 204352480 204352742 -38311611 + L1MD2 LINE L1 5971 6260 -99 * 1135 162 51 38 chr1 204352739 204352974 -38311379 + L1PA16 LINE L1 5929 6166 0 383 220 26 0 chr1 204352976 204353072 -38311281 + L1MD3 LINE L1 6128 7981 -14 777 97 18 18 chr1 204353473 204353586 -38310767 + U5 snRNA snRNA 2 114 -2 470 143 0 0 chr1 204354883 204354946 -38309407 + AluJ/FLAM SINE Alu 2 64 -248 241 229 86 29 chr1 204355413 204355483 -38308870 + L2 LINE L2 3007 3080 -192 1892 169 10 3 chr1 204356292 204356599 -38307754 + AluSx SINE Alu 1 309 -3 2327 106 0 0 chr1 204356828 204357131 -38307222 + AluY SINE Alu 1 303 -8 2243 120 3 3 chr1 204357269 204357578 -38306775 + AluSg SINE Alu 1 309 -1 193 333 56 32 chr1 204358077 204358203 -38306150 + L2 LINE L2 3143 3271 -1 183 260 0 20 chr1 204358454 204358504 -38305849 - L2 LINE L2 -2901 413 365 2528 84 0 0 chr1 204358636 204358946 -38305407 - AluSq SINE Alu -3 310 1 1779 152 4 0 chr1 204359151 204359408 -38304945 + AluSx SINE Alu 1 258 -54 205 292 46 15 chr1 204359462 204359527 -38304826 - MIR SINE MIR -189 73 7 247 310 19 70 chr1 204360171 204360329 -38304024 + L2 LINE L2 2958 3107 -165 226 266 71 88 chr1 204360441 204360554 -38303799 - L2 LINE L2 -45 3268 3158 246 298 76 57 chr1 204360633 204360791 -38303562 + L2 LINE L2 3107 3267 -5 203 314 132 0 chr1 204360797 204360956 -38303397 - L2 LINE L2 -160 3112 2933 652 256 19 76 chr1 204361022 204361094 -38303259 + MER20 DNA MER1_type 1 76 -143 1639 144 60 30 chr1 204361094 204361392 -38302961 - AluSx SINE Alu -5 307 1 652 256 19 76 chr1 204361392 204361530 -38302823 + MER20 DNA MER1_type 76 199 -20 1598 169 68 14 chr1 204361530 204361808 -38302545 + AluJo SINE Alu 1 293 -19 2089 150 0 0 chr1 204361826 204362120 -38302233 + AluSx SINE Alu 1 294 -18 2147 136 0 3 chr1 204362124 204362432 -38301921 + AluSx SINE Alu 1 307 -5 1899 134 65 3 chr1 204365217 204365509 -38298844 + AluSg SINE Alu 1 310 0 240 329 88 7 chr1 204365688 204365825 -38298528 - L2 LINE L2 -42 3271 3124 341 304 133 38 chr1 204365867 204366130 -38298223 - L2 LINE L2 -1008 2306 2019 1170 199 86 17 chr1 204366807 204367109 -38297244 - MER33 DNA MER1_type -1 323 1 2340 106 3 0 chr1 204367132 204367444 -38296909 + AluSp SINE Alu 1 313 0 2319 158 36 87 chr1 204367697 204367859 -38296494 - LTR8 LTR ERV1 -1 690 521 1619 114 12 37 chr1 204367859 204368104 -38296249 - AluSg SINE Alu -11 299 61 2319 158 36 87 chr1 204368104 204368447 -38295906 - LTR8 LTR ERV1 -170 521 211 1158 231 56 52 chr1 204369736 204369900 -38294453 - MER39 LTR ERV1 0 707 545 2374 60 3 0 chr1 204369900 204370202 -38294151 - AluY SINE Alu 0 303 1 1158 231 56 52 chr1 204370202 204370470 -38293883 - MER39 LTR ERV1 -162 545 67 1379 193 52 39 chr1 204371529 204371834 -38292519 + AluJo SINE Alu 1 309 -3 225 306 106 47 chr1 204372471 204373068 -38291285 + L1ME LINE L1 4189 4820 -1326 828 156 0 57 chr1 204373080 204373221 -38291132 + AluJo SINE Alu 1 133 -169 1799 127 79 0 chr1 204373279 204373546 -38290807 + AluSg SINE Alu 20 307 -3 303 349 33 7 chr1 204373667 204373819 -38290534 + L1ME LINE L1 5539 5694 -427 * 365 270 63 56 chr1 204373816 204374227 -38290126 + L1M4 LINE L1 3047 3460 -2686 180 0 0 0 chr1 204374287 204374307 -38290046 + (A)n Simple_repeat Simple_repeat 1 20 0 2201 119 0 16 chr1 204374506 204374809 -38289544 + AluSx SINE Alu 1 298 -14 278 272 54 54 chr1 204375647 204375739 -38288614 + MIR SINE MIR 45 136 -72 684 257 137 48 chr1 204375769 204376176 -38288177 + MLT1G1 LTR MaLR 7 501 -94 2786 182 62 132 chr1 204376202 204376299 -38288054 + L1M4 LINE L1 3832 3934 -2212 2577 151 109 21 chr1 204376299 204376777 -38287576 + MLT2B1 LTR ERVL 1 520 0 2786 182 62 132 chr1 204376777 204377713 -38286640 + L1M4 LINE L1 3934 4793 -1353 265 132 0 0 chr1 204377756 204377794 -38286559 + AluJo SINE Alu 136 173 -129 2257 99 7 0 chr1 204377795 204378089 -38286264 + AluSq SINE Alu 5 300 -13 489 217 144 6 chr1 204378090 204378270 -38286083 + MLT1J LTR MaLR 71 275 -236 2046 149 7 0 chr1 204378295 204378597 -38285756 + AluSx SINE Alu 6 309 -3 1167 123 113 30 chr1 204379297 204379500 -38284853 - AluJo SINE Alu -7 305 86 1490 225 35 6 chr1 204379505 204379852 -38284501 - Charlie4a DNA MER1_type 0 508 152 202 200 0 0 chr1 204379924 204379947 -38284406 + (TTAA)n Simple_repeat Simple_repeat 3 25 -22 1911 120 47 0 chr1 204379947 204380223 -38284130 - AluSx SINE Alu -23 289 1 202 200 0 0 chr1 204380223 204380244 -38284109 + (TTAA)n Simple_repeat Simple_repeat 24 47 0 940 134 89 6 chr1 204380669 204380848 -38283505 - L1MC2 LINE L1 -14 6330 6137 1707 149 70 72 chr1 204380848 204381242 -38283111 - L1MC3 LINE L1 -190 7595 7201 189 356 0 17 chr1 204381304 204381363 -38282990 - L3 LINE CR1 -7 1570 1513 1849 162 7 0 chr1 204381425 204381709 -38282644 + AluJb SINE Alu 1 286 -26 536 296 124 22 chr1 204381974 204382200 -38282153 + MIR SINE MIR 14 262 0 315 104 0 0 chr1 204383746 204383794 -38280559 + (TC)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr1 204384292 204384328 -38280025 + AT_rich Low_complexity Low_complexity 1 36 0 817 266 0 0 chr1 204384523 204384677 -38279676 + FRAM SINE Alu 1 154 -12 29 28 0 0 chr1 204384677 204384713 -38279640 + AT_rich Low_complexity Low_complexity 1 36 0 1933 193 115 5 chr1 204385032 204385416 -38278937 + MSTB LTR MaLR 1 426 0 1530 176 3 31 chr1 204385468 204385758 -38278595 + AluJo SINE Alu 1 282 -30 22 0 0 0 chr1 204386237 204386259 -38278094 + AT_rich Low_complexity Low_complexity 1 22 0 307 288 152 42 chr1 204386510 204386701 -38277652 + L2 LINE L2 2273 2484 -830 324 270 24 8 chr1 204386968 204387094 -38277259 + (TTATA)n Simple_repeat Simple_repeat 2 129 0 290 342 45 59 chr1 204387163 204387520 -38276833 + L2 LINE L2 2917 3268 -4 3289 244 112 26 chr1 204387971 204388682 -38275671 - L2 LINE L2 -1 3312 2664 2107 116 0 20 chr1 204388682 204388984 -38275369 - AluSc SINE Alu -13 296 1 3289 244 112 26 chr1 204388984 204389673 -38274680 - L2 LINE L2 -649 2664 1802 2089 92 9 22 chr1 204389701 204390017 -38274336 - AluSx SINE Alu 0 312 1 276 30 0 0 chr1 204390282 204390315 -38274038 + (CA)n Simple_repeat Simple_repeat 1 33 0 221 299 13 38 chr1 204392426 204392583 -38271770 + G-rich Low_complexity Low_complexity 4 156 0 * 274 268 24 0 chr1 204392502 204392584 -38271769 + GA-rich Low_complexity Low_complexity 1 84 0 26 50 0 0 chr1 204392998 204393038 -38271315 + GC_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr1 204393965 204393987 -38270366 + AT_rich Low_complexity Low_complexity 1 22 0 909 76 61 0 chr1 204398556 204398687 -38265666 - MER85 DNA T2_type 0 139 1 26 50 0 0 chr1 204399125 204399165 -38265188 + AT_rich Low_complexity Low_complexity 1 40 0 570 197 99 84 chr1 204400996 204401209 -38263144 - L1ME3A LINE L1 -19 6151 5936 201 196 0 0 chr1 204401483 204401529 -38262824 + T-rich Low_complexity Low_complexity 1 46 0 224 170 19 0 chr1 204401896 204401949 -38262404 + CT-rich Low_complexity Low_complexity 3 56 0 198 0 0 0 chr1 204403074 204403096 -38261257 + (A)n Simple_repeat Simple_repeat 1 22 0 23 78 0 0 chr1 204404051 204404102 -38260251 + AT_rich Low_complexity Low_complexity 1 51 0 804 217 40 49 chr1 204407801 204408027 -38256326 + MIR SINE MIR 3 226 -36 1904 125 3 26 chr1 204408632 204408945 -38255408 + AluSx SINE Alu 1 306 -6 484 133 13 0 chr1 204409916 204409991 -38254362 + AluJ/FLAM SINE Alu 2 77 -235 850 162 6 46 chr1 204409996 204410169 -38254184 + AluSg/x SINE Alu 146 311 -1 629 276 36 36 chr1 204410299 204410495 -38253858 + MIR3 SINE MIR 13 208 0 21 0 0 0 chr1 204411010 204411031 -38253322 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 204411484 204411506 -38252847 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 204411608 204411631 -38252722 + GC_rich Low_complexity Low_complexity 1 23 0 218 341 0 0 chr1 204411784 204411907 -38252446 + (TG)n Simple_repeat Simple_repeat 1 123 0 315 285 35 29 chr1 204412017 204412189 -38252164 - MER5B DNA MER1_type -5 173 1 226 331 192 17 chr1 204412372 204412544 -38251809 - MIR SINE MIR -55 207 6 237 322 44 0 chr1 204413226 204413316 -38251037 - MIR3 SINE MIR -34 174 81 433 319 145 14 chr1 204414675 204414882 -38249471 + MIR SINE MIR 2 235 -27 472 152 36 62 chr1 204416530 204416642 -38247711 - MER33 DNA MER1_type 0 363 255 1497 160 4 4 chr1 204416644 204416894 -38247459 + AluJo SINE Alu 1 250 -62 952 109 0 36 chr1 204416896 204417034 -38247319 - AluJo/FLAM SINE Alu -169 133 1 1135 135 15 58 chr1 204417045 204417305 -38247048 - MER33 DNA MER1_type -69 255 7 345 264 160 56 chr1 204418493 204418637 -38245716 - MIR SINE MIR -76 186 28 1855 148 17 0 chr1 204418852 204419143 -38245210 - AluSx SINE Alu -16 296 1 1684 135 3 50 chr1 204419153 204419450 -38244903 - AluSx SINE Alu -19 293 11 374 236 72 5 chr1 204419514 204419629 -38244724 - MIR3 SINE MIR -48 160 40 1795 139 0 7 chr1 204420680 204420953 -38243400 - AluJb SINE Alu -21 291 21 255 237 21 21 chr1 204421007 204421100 -38243253 + (TA)n Simple_repeat Simple_repeat 1 93 0 189 0 0 0 chr1 204421202 204421223 -38243130 + (CA)n Simple_repeat Simple_repeat 2 22 0 495 232 80 16 chr1 204421250 204421375 -38242978 - MER94 DNA DNA -1 133 1 186 103 0 0 chr1 204423071 204423100 -38241253 + (TG)n Simple_repeat Simple_repeat 2 30 0 330 278 73 47 chr1 204423407 204423598 -38240755 + L2 LINE L2 3110 3305 -8 252 86 0 0 chr1 204423599 204423634 -38240719 + (TGGA)n Simple_repeat Simple_repeat 4 38 0 560 218 168 61 chr1 204424000 204424062 -38240291 - MLT1L LTR MaLR 0 615 561 1188 129 13 77 chr1 204424062 204424295 -38240058 + MER20 DNA MER1_type 2 219 0 560 218 168 61 chr1 204424295 204424596 -38239757 - MLT1L LTR MaLR -54 561 151 231 221 257 80 chr1 204424830 204424943 -38239410 - L2 LINE L2 -1 3271 3139 249 366 111 21 chr1 204425055 204425290 -38239063 - L2 LINE L2 -213 3059 2804 2288 62 0 0 chr1 204426160 204426473 -38237880 + AluY SINE Alu 2 311 0 1317 81 0 0 chr1 204426473 204426647 -38237706 + AluY SINE Alu 133 306 -5 1262 101 0 0 chr1 204427303 204427472 -38236881 - AluSg/x SINE Alu -13 297 129 1209 279 39 49 chr1 204427478 204427642 -38236711 - L2 LINE L2 -615 2699 2535 2102 130 3 0 chr1 204427642 204427950 -38236403 + AluSx SINE Alu 1 309 -3 1209 279 39 49 chr1 204427950 204428277 -38236076 - L2 LINE L2 -779 2535 2213 1397 250 104 44 chr1 204428277 204428467 -38235886 - MLT1G1 LTR MaLR 0 593 416 2106 96 0 43 chr1 204428467 204428812 -38235541 - AluSg SINE Alu 0 310 1 1397 250 104 44 chr1 204428812 204429174 -38235179 - MLT1G1 LTR MaLR -177 416 1 297 287 96 19 chr1 204429210 204429367 -38234986 - L2 LINE L2 -1143 2171 2003 350 270 44 95 chr1 204429369 204429506 -38234847 - L2 LINE L2 0 3313 3184 290 254 136 45 chr1 204429509 204429606 -38234747 - L2 LINE L2 -1360 1954 1867 1810 167 0 7 chr1 204429606 204429906 -38234447 + AluJo SINE Alu 1 298 -14 290 254 136 45 chr1 204429906 204429985 -38234368 - L2 LINE L2 -1447 1867 1762 239 242 0 16 chr1 204431041 204431103 -38233250 + MIR SINE MIR 68 128 -134 677 202 65 18 chr1 204431108 204431276 -38233077 - AluJo SINE Alu -17 295 120 808 142 0 0 chr1 204431303 204431423 -38232930 + FLAM_C SINE Alu 1 120 -23 198 0 0 0 chr1 204431423 204431445 -38232908 + (TAA)n Simple_repeat Simple_repeat 2 23 0 193 256 0 0 chr1 204431445 204431488 -38232865 + MIR SINE MIR 158 200 -62 2626 182 61 4 chr1 204431512 204432002 -38232351 - MER82 DNA MER2_type -25 628 111 320 153 276 61 chr1 204433233 204433272 -38231081 - MIR SINE MIR -28 234 205 6303 114 70 67 chr1 204433272 204434081 -38230272 - Tigger3b DNA MER2_type -1797 1231 415 1820 173 0 3 chr1 204434081 204434394 -38229959 - AluJb SINE Alu 0 312 1 6303 114 70 67 chr1 204434394 204434810 -38229543 - Tigger3b DNA MER2_type -2613 415 2 320 153 276 61 chr1 204434810 204434868 -38229485 - MIR SINE MIR -57 205 116 185 250 94 31 chr1 204434877 204434941 -38229412 + MIR3 SINE MIR 115 182 -26 1595 149 3 60 chr1 204434979 204435280 -38229073 + AluJb SINE Alu 14 297 -15 973 237 5 0 chr1 204435409 204435607 -38228746 - MER58A DNA MER1_type -7 217 19 839 127 0 0 chr1 204435960 204436078 -38228275 - MLT1B LTR MaLR 0 390 273 1725 174 0 7 chr1 204436078 204436366 -38227987 + AluJo SINE Alu 1 286 -26 1421 162 0 4 chr1 204436381 204436615 -38227738 + AluSx SINE Alu 1 233 -79 207 0 0 0 chr1 204436644 204436667 -38227686 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1554 170 21 14 chr1 204436667 204436764 -38227589 - MLT1B LTR MaLR -106 284 189 2053 153 55 3 chr1 204436764 204437111 -38227242 + MLT1A1 LTR MaLR 1 365 0 1554 170 21 14 chr1 204437111 204437295 -38227058 - MLT1B LTR MaLR -201 189 1 248 205 13 44 chr1 204437297 204437375 -38226978 - MIR SINE MIR -68 140 70 1479 212 27 35 chr1 204437388 204437481 -38226872 - L1ME2 LINE L1 -314 5850 5758 2004 136 0 7 chr1 204437481 204437791 -38226562 - AluSq SINE Alu -5 308 1 1479 212 27 35 chr1 204437791 204438065 -38226288 - L1ME2 LINE L1 -406 5758 5486 441 0 0 0 chr1 204438093 204438142 -38226211 + (TG)n Simple_repeat Simple_repeat 1 49 0 572 172 14 28 chr1 204438196 204438341 -38226012 + L1M4 LINE L1 69 211 -6648 508 151 11 0 chr1 204438340 204438433 -38225920 + L1M4 LINE L1 5418 5511 -1446 * 434 145 0 0 chr1 204438438 204438500 -38225853 + AluS SINE Alu 2 63 -250 3684 104 2 0 chr1 204438507 204439009 -38225344 + MER41B LTR ERV1 133 635 0 3714 145 15 7 chr1 204439410 204439996 -38224357 - LTR59 LTR ERV1 -6 591 1 3927 107 19 26 chr1 204440344 204440917 -38223436 + MER61E LTR ERV1 1 569 0 759 186 0 14 chr1 204441359 204441499 -38222854 + Charlie4 DNA MER1_type 1818 1955 -6 210 245 0 20 chr1 204441513 204441562 -38222791 + CT-rich Low_complexity Low_complexity 5 52 0 1162 253 89 71 chr1 204442390 204442885 -38221468 + MLT1J LTR MaLR 1 504 -7 2666 117 47 43 chr1 204443003 204443374 -38220979 - MER83 LTR ERV1 0 448 73 2371 113 3 0 chr1 204443374 204443683 -38220670 - AluSx SINE Alu -2 310 1 2666 117 47 43 chr1 204443683 204443757 -38220596 - MER83 LTR ERV1 -375 73 1 366 208 11 90 chr1 204443918 204444100 -38220253 - MIR SINE MIR -8 254 94 1180 210 44 4 chr1 204444176 204444428 -38219925 + AluJo SINE Alu 48 309 -3 587 124 0 9 chr1 204444428 204444533 -38219820 + (GGAA)n Simple_repeat Simple_repeat 1 104 0 284 309 105 20 chr1 204445311 204445463 -38218890 + LTR67 LTR ERVL 22 186 -371 187 196 196 0 chr1 204446161 204446217 -38218136 - L2 LINE L2 0 3272 3206 571 44 0 111 chr1 204446710 204446760 -38217593 - MADE1 DNA Mariner 0 80 43 2243 78 16 33 chr1 204446760 204447067 -38217286 + AluSx SINE Alu 1 302 -10 571 44 0 111 chr1 204447067 204447106 -38217247 - MADE1 DNA Mariner -37 43 1 463 204 10 10 chr1 204447178 204447281 -38217072 + L2 LINE L2 3204 3306 -7 2239 116 7 0 chr1 204447310 204447611 -38216742 + AluSq SINE Alu 1 303 -10 1706 163 13 42 chr1 204447622 204447928 -38216425 + AluJo SINE Alu 1 297 -15 715 229 75 52 chr1 204447928 204448195 -38216158 - L2 LINE L2 -618 2696 2424 826 265 76 30 chr1 204448215 204448611 -38215742 - L2 LINE L2 -350 2964 2551 544 267 155 35 chr1 204448620 204448987 -38215366 + L2 LINE L2 2895 3305 -8 2103 125 3 3 chr1 204449143 204449438 -38214915 - AluJo SINE Alu -17 295 1 22 35 0 0 chr1 204449547 204449576 -38214777 + AT_rich Low_complexity Low_complexity 1 29 0 285 333 65 0 chr1 204450095 204450218 -38214135 - MIR3 SINE MIR -2 206 76 229 353 57 33 chr1 204450297 204450419 -38213934 - MIR3 SINE MIR -69 139 15 351 317 123 26 chr1 204450604 204450831 -38213522 + MIR SINE MIR 14 262 0 25 31 0 0 chr1 204452513 204452545 -38211808 + GC_rich Low_complexity Low_complexity 1 32 0 363 232 8 56 chr1 204452977 204453102 -38211251 - MIR3 SINE MIR -35 173 55 471 286 94 21 chr1 204453659 204453851 -38210502 + MIR SINE MIR 20 225 -37 1054 161 54 72 chr1 204453856 204454004 -38210349 + ORSL DNA AcHobo 2 144 -131 2088 103 43 0 chr1 204454004 204454285 -38210068 - AluSx SINE Alu -19 293 1 1054 161 54 72 chr1 204454285 204454415 -38209938 + ORSL DNA AcHobo 144 275 0 1713 143 85 0 chr1 204456078 204456350 -38208003 + AluJb SINE Alu 1 295 -17 2459 165 17 55 chr1 204456414 204456888 -38207465 - LTR32 LTR ERVL -1 470 15 203 240 0 0 chr1 204457264 204457314 -38207039 + MER5A DNA MER1_type 133 182 -7 705 246 23 0 chr1 204457329 204457500 -38206853 - MER5A DNA MER1_type 0 189 15 230 275 117 33 chr1 204457505 204457625 -38206728 - MER5B DNA MER1_type -3 175 46 4289 93 6 0 chr1 204457668 204458217 -38206136 + MER41A LTR ERV1 1 552 -2 2935 172 174 45 chr1 204458217 204458949 -38205404 - LTR1B LTR ERV1 0 826 1 274 258 90 34 chr1 204458999 204459088 -38205265 - MIR SINE MIR -122 140 47 2021 157 0 0 chr1 204460024 204460330 -38204023 - AluJb SINE Alu -6 306 1 248 228 0 25 chr1 204461142 204461221 -38203132 + (CATA)n Simple_repeat Simple_repeat 3 79 0 26 0 0 0 chr1 204461228 204461254 -38203099 + AT_rich Low_complexity Low_complexity 1 26 0 1644 148 53 18 chr1 204463307 204463590 -38200763 - AluJb SINE Alu -19 293 1 2040 101 79 7 chr1 204464826 204465103 -38199250 - AluSx SINE Alu -15 297 1 180 97 0 0 chr1 204465558 204465589 -38198764 + (CA)n Simple_repeat Simple_repeat 2 32 0 2266 99 33 0 chr1 204465742 204466044 -38198309 - AluSx SINE Alu 0 312 1 869 168 0 0 chr1 204466807 204466938 -38197415 + AluJb SINE Alu 2 132 -180 1618 177 21 14 chr1 204468223 204468538 -38195815 + AluJb SINE Alu 1 317 0 1429 169 50 30 chr1 204468936 204469247 -38195106 - MLT1C LTR MaLR 0 467 180 225 269 60 20 chr1 204469247 204469396 -38194957 - MLT1D LTR MaLR -270 235 81 1624 120 0 5 chr1 204469406 204469623 -38194730 + AluJb SINE Alu 74 289 -23 25 31 0 0 chr1 204469627 204469659 -38194694 + AT_rich Low_complexity Low_complexity 1 32 0 484 302 29 12 chr1 204469815 204469987 -38194366 + MIR3 SINE MIR 28 202 -6 332 238 95 9 chr1 204470677 204470782 -38193571 + L2 LINE L2 3199 3312 -1 186 43 0 0 chr1 204471098 204471121 -38193232 + (C)n Simple_repeat Simple_repeat 1 23 0 369 0 0 0 chr1 204471140 204471181 -38193172 + (CA)n Simple_repeat Simple_repeat 2 42 0 290 311 19 0 chr1 204472262 204472365 -38191988 + L2 LINE L2 1823 1927 -1387 1731 151 23 23 chr1 204472517 204472821 -38191532 - AluJo SINE Alu -6 306 3 22 35 0 0 chr1 204472832 204472861 -38191492 + AT_rich Low_complexity Low_complexity 1 29 0 1884 164 0 3 chr1 204472903 204473201 -38191152 - AluJb SINE Alu -15 297 1 637 284 70 4 chr1 204473767 204473996 -38190357 + MER112 DNA MER1_type 11 254 -6 1916 140 0 0 chr1 204474313 204474623 -38189730 + AluSx SINE Alu 19 328 0 450 292 14 0 chr1 204474656 204474800 -38189553 - MIR SINE MIR 0 262 117 334 286 25 42 chr1 204475281 204475400 -38188953 - L2 LINE L2 -5 3308 3192 1782 182 0 3 chr1 204475621 204475923 -38188430 + AluJo SINE Alu 1 301 -11 37 23 0 0 chr1 204477115 204477159 -38187194 + AT_rich Low_complexity Low_complexity 1 44 0 881 215 12 0 chr1 204477162 204477334 -38187019 - FAM SINE Alu -1 174 1 23 0 0 0 chr1 204477692 204477715 -38186638 + AT_rich Low_complexity Low_complexity 1 23 0 6192 154 5 12 chr1 204477745 204478992 -38185361 - L1MA3 LINE L1 0 6305 5063 2025 115 3 14 chr1 204479087 204479406 -38184947 + AluSx SINE Alu 1 316 0 2053 153 0 7 chr1 204480040 204480347 -38184006 - AluSx SINE Alu -7 305 1 21 36 0 0 chr1 204480499 204480527 -38183826 + AT_rich Low_complexity Low_complexity 1 28 0 3295 161 36 14 chr1 204482004 204482213 -38182140 + L1MB3 LINE L1 4900 5103 -1080 1876 175 0 9 chr1 204482213 204482345 -38182008 + AluJo SINE Alu 1 133 -179 2380 86 7 7 chr1 204482345 204482647 -38181706 + AluSp SINE Alu 1 302 -11 1876 175 0 9 chr1 204482647 204482829 -38181524 + AluJo SINE Alu 133 312 0 3295 161 36 14 chr1 204482829 204483534 -38180819 + L1MB3 LINE L1 5103 5834 -349 692 112 9 28 chr1 204483543 204483650 -38180703 - MER49 LTR ERV1 -7 916 812 11935 87 31 6 chr1 204483650 204484530 -38179823 - L1M1 LINE L1 -3939 3626 2769 2195 124 20 0 chr1 204484530 204484836 -38179517 - AluSx SINE Alu 0 312 1 11935 87 31 6 chr1 204484836 204485710 -38178643 - L1M1 LINE L1 -4796 2769 1829 1399 152 35 0 chr1 204485717 204485947 -38178406 - L1M1 LINE L1 -7314 251 14 2474 63 0 13 chr1 204486098 204486399 -38177954 - AluY SINE Alu -4 307 11 1516 139 108 16 chr1 204486638 204486896 -38177457 + AluSx SINE Alu 1 282 -30 330 132 0 0 chr1 204486898 204486951 -38177402 + (TA)n Simple_repeat Simple_repeat 2 54 0 244 93 163 0 chr1 204487202 204487245 -38177108 - MER53 DNA DNA 0 189 140 757 150 0 0 chr1 204487283 204487396 -38176957 - AluSq/x SINE Alu -180 133 21 458 148 22 148 chr1 204487418 204487496 -38176857 - MER53 DNA DNA -71 118 62 2142 108 3 0 chr1 204487496 204487784 -38176569 - AluSx SINE Alu -23 289 1 458 148 22 148 chr1 204487784 204487840 -38176513 - MER53 DNA DNA -127 62 1 24 0 0 0 chr1 204488742 204488766 -38175587 + GC_rich Low_complexity Low_complexity 1 24 0 2183 103 7 7 chr1 204489715 204490025 -38174328 - AluSx SINE Alu -1 311 2 239 276 166 35 chr1 204490306 204490451 -38173902 - MIR SINE MIR -49 213 50 10406 82 36 19 chr1 204490688 204490794 -38173559 - Charlie3 DNA MER1_type 0 2706 2603 1757 137 23 49 chr1 204490794 204491101 -38173252 - AluSx SINE Alu -9 303 5 10406 82 36 19 chr1 204491101 204493275 -38171078 - Charlie3 DNA MER1_type -103 2603 294 985 136 0 25 chr1 204493275 204493437 -38170916 + FRAM SINE Alu 1 40 0 963 228 76 70 chr1 204493441 204493640 -38170713 - Charlie4a DNA MER1_type -1614 347 144 1995 152 3 0 chr1 204493640 204493936 -38170417 - AluSx SINE Alu -15 297 1 963 228 76 70 chr1 204493936 204494065 -38170288 - Charlie4a DNA MER1_type -1817 144 17 1640 155 90 0 chr1 204494158 204494435 -38169918 - AluJb SINE Alu -10 302 1 228 35 0 0 chr1 204494657 204494686 -38169667 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1359 262 172 9 chr1 204494721 204495302 -38169051 + L1ME3 LINE L1 3280 3955 -2191 1294 255 123 12 chr1 204495381 204495868 -38168485 + L1ME3 LINE L1 4573 5113 -1033 814 246 31 13 chr1 204495876 204496100 -38168253 + L1ME3 LINE L1 5806 6033 -129 1645 174 7 33 chr1 204496102 204496407 -38167946 - AluJb SINE Alu -15 297 1 1916 163 3 0 chr1 204496481 204496787 -38167566 + AluJo SINE Alu 1 307 -5 2042 196 86 20 chr1 204497348 204497803 -38166550 - MLT1D LTR MaLR -2 503 19 284 261 174 35 chr1 204497938 204498044 -38166309 + L3 LINE CR1 1019 1109 -468 1669 167 32 14 chr1 204498044 204498326 -38166027 + AluJb SINE Alu 1 287 -25 284 261 174 35 chr1 204498326 204498449 -38165904 + L3 LINE CR1 1109 1280 -297 778 255 77 16 chr1 204498502 204498749 -38165604 - MIR SINE MIR 0 262 1 915 117 99 56 chr1 204498882 204499044 -38165309 + FRAM SINE Alu 1 167 -9 1000 263 84 51 chr1 204499347 204499834 -38164519 + MLT1H LTR MaLR 47 549 0 972 140 0 0 chr1 204500037 204500180 -38164173 + AluJb SINE Alu 1 143 -169 410 106 0 0 chr1 204500184 204500250 -38164103 + Alu SINE Alu 247 312 0 769 258 10 5 chr1 204500827 204501036 -38163317 + MIR SINE MIR 3 212 -50 3657 89 16 4 chr1 204502959 204503453 -38160900 + LTR3b LTR ERVK 1 500 0 305 227 136 0 chr1 204503879 204503967 -38160386 - MIR SINE MIR 0 262 163 1021 173 28 33 chr1 204504253 204504467 -38159886 + MER6 DNA MER2_type 21 233 -632 329 347 0 20 chr1 204504471 204504648 -38159705 - PABL_B-int LTR ERV1 -3756 3366 3214 780 261 52 62 chr1 204504718 204505120 -38159233 + LTR38B LTR ERV1 205 602 -8 3773 145 40 8 chr1 204505128 204505756 -38158597 + MER6 DNA MER2_type 218 865 0 1769 148 70 0 chr1 204505781 204506065 -38158288 + AluJb SINE Alu 1 304 -8 1892 135 122 17 chr1 204506895 204507257 -38157096 - L1MA7 LINE L1 -14 6277 5878 189 283 0 0 chr1 204507319 204507365 -38156988 + MIR SINE MIR 157 202 -60 368 269 114 64 chr1 204507600 204507819 -38156534 - MLT1J LTR MaLR -2 509 280 691 186 31 0 chr1 204508078 204508207 -38156146 + FLAM_A SINE Alu 1 133 0 908 135 0 0 chr1 204508247 204508380 -38155973 - FLAM_C SINE Alu 0 133 1 236 269 161 0 chr1 204508506 204508599 -38155754 - L2 LINE L2 -31 3241 3134 314 45 23 0 chr1 204508698 204508742 -38155611 + (TG)n Simple_repeat Simple_repeat 2 46 0 1724 156 85 100 chr1 204609519 204609980 -38054373 + LTR8 LTR ERV1 191 644 -47 478 94 0 0 chr1 204609981 204610045 -38054308 - AluJ/FLAM SINE Alu -237 75 12 46 0 0 0 chr1 204610196 204610242 -38054111 + AT_rich Low_complexity Low_complexity 1 46 0 185 263 63 120 chr1 204610268 204610443 -38053910 - L3 LINE CR1 -5 1572 1408 2101 108 3 22 chr1 204610444 204610760 -38053593 - AluSx SINE Alu -2 310 1 2433 75 0 0 chr1 204610791 204611083 -38053270 - AluSg SINE Alu -18 292 1 1261 285 72 25 chr1 204611136 204611609 -38052744 - MLT1J LTR MaLR -16 495 1 656 315 123 41 chr1 204611611 204612122 -38052231 - L3 LINE CR1 -308 1269 717 228 308 143 0 chr1 204612165 204612256 -38052097 + L2 LINE L2 3169 3272 0 2493 70 0 6 chr1 204612285 204612598 -38051755 + AluY SINE Alu 1 311 0 665 91 10 20 chr1 204612676 204612775 -38051578 + MER4A LTR ERV1 1 98 -566 1430 120 80 93 chr1 204612775 204613125 -38051228 + MER4A LTR ERV1 261 664 0 849 108 31 8 chr1 204613289 204613465 -38050888 - AluSg/x SINE Alu 0 328 150 325 140 0 0 chr1 204613525 204613582 -38050771 - Alu SINE Alu 0 302 246 1562 129 0 0 chr1 204613683 204613900 -38050453 - AluSx SINE Alu -95 217 1 2234 108 0 0 chr1 204614172 204614469 -38049884 - AluSc SINE Alu -12 297 1 1655 181 0 4 chr1 204614775 204615041 -38049312 - AluJo SINE Alu -32 280 16 432 0 0 0 chr1 204615816 204615864 -38048489 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1979 135 0 3 chr1 204615866 204616148 -38048205 - AluSx SINE Alu -31 281 1 469 179 0 0 chr1 204616405 204616472 -38047881 - AluS SINE Alu -243 68 2 2111 111 3 3 chr1 204616551 204616848 -38047505 - AluSq SINE Alu -16 297 1 2532 54 10 10 chr1 204616872 204617185 -38047168 - L1PA6 LINE L1 -1 6153 5841 539 267 100 53 chr1 204617385 204617666 -38046687 - MLT1H LTR MaLR -175 374 81 441 261 139 12 chr1 204617702 204617867 -38046486 + MER112 DNA MER1_type 75 260 0 299 185 0 174 chr1 204618025 204618117 -38046236 + MER5C DNA MER1_type 1 76 -248 227 182 23 0 chr1 204618251 204618295 -38046058 - MER5C DNA MER1_type -249 75 31 1111 124 0 32 chr1 204618650 204618835 -38045518 - AluSg/x SINE Alu 0 312 134 180 0 0 0 chr1 204618835 204618855 -38045498 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2038 110 22 0 chr1 204618855 204619127 -38045226 - AluSc SINE Alu -31 278 1 2413 84 3 3 chr1 204619442 204619753 -38044600 - AluSp SINE Alu -2 311 1 318 140 18 0 chr1 204620007 204620064 -38044289 - MLT2B1 LTR ERVL -1 519 462 414 0 0 0 chr1 204620067 204620113 -38044240 + (TA)n Simple_repeat Simple_repeat 1 46 0 670 258 99 28 chr1 204620129 204620421 -38043932 - MLT2B1 LTR ERVL -34 486 193 318 130 0 0 chr1 204620438 204620484 -38043869 + 5S rRNA rRNA 1 46 -75 2006 137 3 3 chr1 204620614 204620899 -38043454 - AluSx SINE Alu -27 285 1 744 232 69 19 chr1 204620899 204621183 -38043170 + L1MC4 LINE L1 7563 8042 0 1558 187 0 35 chr1 204621270 204621389 -38042964 + AluJo SINE Alu 3 125 -187 2348 103 0 0 chr1 204621389 204621691 -38042662 - AluSg SINE Alu -8 302 1 1558 187 0 35 chr1 204621691 204621891 -38042462 + AluJo SINE Alu 125 312 0 225 196 0 0 chr1 204621951 204622002 -38042351 + (TG)n Simple_repeat Simple_repeat 1 51 0 1291 130 93 8 chr1 204622012 204622222 -38042131 + L1MA7 LINE L1 5999 6234 -57 261 0 0 0 chr1 204622222 204622251 -38042102 + (TA)n Simple_repeat Simple_repeat 2 30 0 1291 130 93 8 chr1 204622251 204622287 -38042066 + L1MA7 LINE L1 6234 6266 -25 837 218 53 24 chr1 204622528 204622734 -38041619 + MIR SINE MIR 51 262 0 1807 153 20 7 chr1 204622761 204623056 -38041297 - AluJb SINE Alu -3 309 11 1447 201 167 37 chr1 204624093 204624500 -38039853 - MER110 LTR ERV1 0 491 32 * 2882 124 21 42 chr1 204624492 204624967 -38039386 + LTR32 LTR ERVL 7 471 0 1852 163 3 3 chr1 204625171 204625466 -38038887 - AluJb SINE Alu -17 295 1 1770 122 68 18 chr1 204626058 204626336 -38038017 - AluSx SINE Alu -20 292 1 485 316 123 5 chr1 204626831 204627043 -38037310 - MIR SINE MIR 0 262 26 387 219 263 0 chr1 204627053 204627167 -38037186 + MIR SINE MIR 2 145 -117 326 103 385 0 chr1 204627172 204627250 -38037103 + L1M LINE L1 5308 5415 -2580 258 170 0 0 chr1 204627364 204627411 -38036942 + MIR SINE MIR 169 215 -47 2294 84 0 0 chr1 204627413 204627726 -38036627 + AluSg SINE Alu 1 310 0 476 278 35 0 chr1 204627844 204628005 -38036348 + MIR SINE MIR 67 232 -30 2415 150 0 0 chr1 204628936 204629283 -38035070 + MER7A DNA MER2_type 1 345 -1 1525 135 91 8 chr1 204629876 204630195 -38034158 - MER4A LTR ERV1 0 664 261 636 122 10 10 chr1 204630195 204630293 -38034060 - MER4A LTR ERV1 -566 98 1 510 367 46 0 chr1 204630442 204630701 -38033652 + L2 LINE L2 2625 2895 -419 543 217 96 0 chr1 204631293 204631403 -38032950 + MER63 DNA MER1_type 1 747 -315 2466 192 27 18 chr1 204631403 204631927 -38032426 - LTR27 LTR ERV1 0 501 2 668 181 154 92 chr1 204631936 204632196 -38032157 + MER63 DNA MER1_type 787 1062 0 447 293 152 0 chr1 204632482 204632646 -38031707 + MER5A DNA MER1_type 1 189 0 496 225 17 50 chr1 204632699 204632819 -38031534 + MER3 DNA MER1_type 9 124 -85 1281 278 50 0 chr1 204632819 204633182 -38031171 + L1MEc LINE L1 403 783 -5613 23 33 0 0 chr1 204633183 204633213 -38031140 + AT_rich Low_complexity Low_complexity 1 30 0 2996 241 93 25 chr1 204633677 204633755 -38030598 + L1MEc LINE L1 779 850 -5546 180 0 0 0 chr1 204633755 204633775 -38030578 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2996 241 93 25 chr1 204633775 204634776 -38029577 + L1MEc LINE L1 850 1931 -4465 685 228 0 38 chr1 204634778 204634962 -38029391 + L1MEc LINE L1 3633 3809 -2406 214 361 136 0 chr1 204635000 204635155 -38029198 + L2 LINE L2 2598 2773 -541 218 247 14 41 chr1 204635333 204635406 -38028947 - MIR SINE MIR -2 260 190 * 359 259 80 9 chr1 204635403 204635515 -38028838 + MIR SINE MIR 128 247 -15 2289 100 7 0 chr1 204635599 204635898 -38028455 - AluSp SINE Alu -12 301 1 2185 114 26 7 chr1 204635910 204636216 -38028137 - AluSx SINE Alu 0 312 1 466 254 57 25 chr1 204636226 204636348 -38028005 - MIR SINE MIR -123 139 14 2812 120 16 32 chr1 204636377 204636742 -38027611 + MSTA LTR MaLR 1 359 -69 2445 88 0 0 chr1 204636742 204637049 -38027304 - AluY SINE Alu -4 307 1 2812 120 16 32 chr1 204637049 204637115 -38027238 + MSTA LTR MaLR 359 425 -3 10132 165 23 6 chr1 204637118 204638740 -38025613 + MSTA-int LTR MaLR 1 1651 0 2624 134 78 0 chr1 204638740 204639135 -38025218 + MSTA LTR MaLR 1 426 -2 1332 176 46 77 chr1 204640278 204640692 -38023661 - LTR37A LTR ERV1 -4 422 22 6580 112 41 9 chr1 204640712 204641855 -38022498 - L1MA3 LINE L1 -10 6295 5110 1604 105 30 14 chr1 204641852 204642181 -38022172 - L1P LINE L1 -743 5403 5090 * 4710 160 11 19 chr1 204642169 204643044 -38021309 + L1P LINE L1 4211 5078 -1068 2196 180 39 21 chr1 204643036 204643552 -38020801 - L1MEc LINE L1 -2565 3650 3126 * 12208 225 34 49 chr1 204643557 204646456 -38017897 + L1PA12 LINE L1 4 2944 -4640 2260 120 7 0 chr1 204646456 204646764 -38017589 + AluSq SINE Alu 1 310 -3 12208 225 34 49 chr1 204646764 204646971 -38017382 + L1PA12 LINE L1 2944 3152 -4432 2052 125 3 71 chr1 204646971 204647307 -38017046 + AluSq SINE Alu 1 313 0 12208 225 34 49 chr1 204647307 204649352 -38015001 + L1PA12 LINE L1 3152 5041 -2543 2034 158 0 0 chr1 204649352 204649644 -38014709 - AluSx SINE Alu -16 296 5 12208 225 34 49 chr1 204649644 204650698 -38013655 + L1PA12 LINE L1 5041 6109 -1475 299 282 39 29 chr1 204651203 204651306 -38013047 + L2 LINE L2 3134 3237 -35 21 0 0 0 chr1 204651307 204651328 -38013025 + AT_rich Low_complexity Low_complexity 1 21 0 2357 103 0 3 chr1 204651727 204652029 -38012324 + AluSx SINE Alu 1 301 -11 263 211 0 0 chr1 204652063 204652120 -38012233 - L1MEc LINE L1 -3977 2238 2182 319 283 46 104 chr1 204652143 204652364 -38011989 - L1MEc LINE L1 -4405 1991 1791 1797 164 3 10 chr1 204652364 204652656 -38011697 + AluJb SINE Alu 1 290 -22 319 283 46 104 chr1 204652656 204652741 -38011612 - L1MEc LINE L1 -4605 1791 1703 446 172 162 0 chr1 204652765 204652864 -38011489 - L2 LINE L2 -8 3305 3191 1414 262 57 48 chr1 204653979 204654281 -38010072 - L1MEc LINE L1 -4684 1712 1414 1740 238 103 34 chr1 204654281 204654633 -38009720 - MLT1E LTR MaLR 0 593 188 462 18 0 0 chr1 204654633 204654688 -38009665 + (CA)n Simple_repeat Simple_repeat 2 56 0 1740 238 103 34 chr1 204654688 204654890 -38009463 - MLT1E LTR MaLR -405 188 1 1414 262 57 48 chr1 204654890 204655273 -38009080 - L1MEc LINE L1 -4982 1414 1021 2262 119 6 0 chr1 204655734 204656045 -38008308 - AluSq SINE Alu 0 313 1 2140 142 0 0 chr1 204656052 204656361 -38007992 - AluSx SINE Alu -3 309 1 2534 218 92 4 chr1 204656386 204656931 -38007422 + MLT1E LTR MaLR 1 593 0 343 267 23 0 chr1 204657243 204657329 -38007024 - L1MC/D LINE L1 -2213 5595 5508 209 261 0 77 chr1 204657345 204657359 -38006994 + L2 LINE L2 2992 3005 -267 2412 142 10 20 chr1 204657359 204657482 -38006871 - MLT1B LTR MaLR 0 390 267 2312 114 3 0 chr1 204657482 204657790 -38006563 - AluSp SINE Alu -4 309 1 2412 142 10 20 chr1 204657790 204658060 -38006293 - MLT1B LTR MaLR -123 267 1 209 261 0 77 chr1 204658060 204658110 -38006243 + L2 LINE L2 3005 3051 -221 317 214 0 12 chr1 204658140 204658224 -38006129 + (TA)n Simple_repeat Simple_repeat 1 83 0 24 32 0 0 chr1 204658509 204658540 -38005813 + AT_rich Low_complexity Low_complexity 1 31 0 2283 110 3 3 chr1 204658547 204658847 -38005506 + AluSx SINE Alu 1 300 -12 348 209 209 85 chr1 204658963 204659164 -38005189 - MLT1H LTR MaLR -242 307 82 220 177 13 13 chr1 204659217 204659234 -38005119 + (TA)n Simple_repeat Simple_repeat 1 17 -62 2151 115 7 0 chr1 204659234 204659521 -38004832 + AluSx SINE Alu 1 289 -23 220 177 13 13 chr1 204659521 204659582 -38004771 + (TA)n Simple_repeat Simple_repeat 16 79 0 252 356 74 15 chr1 204660013 204660148 -38004205 - MER5B DNA MER1_type -35 143 1 2403 74 7 7 chr1 204660653 204660951 -38003402 + AluSg SINE Alu 1 298 -12 620 323 26 105 chr1 204664471 204664975 -37999378 - L2 LINE L2 0 3272 2809 507 33 0 0 chr1 204667261 204667322 -37997031 + (CA)n Simple_repeat Simple_repeat 1 61 0 1555 142 65 8 chr1 204671042 204671288 -37993065 - AluSq SINE Alu -53 260 1 199 156 22 22 chr1 204671930 204671975 -37992378 - MIR SINE MIR -24 238 194 1845 126 42 0 chr1 204673143 204673406 -37990947 - AluSx SINE Alu -38 274 1 2288 131 27 0 chr1 204673897 204674225 -37990128 - MER1B DNA MER1_type 0 337 1 232 290 70 20 chr1 204675705 204675805 -37988548 + MIR SINE MIR 47 151 -111 1587 189 0 11 chr1 204676006 204676291 -37988062 - AluJo SINE Alu -30 282 1 268 274 8 8 chr1 204676446 204676563 -37987790 + GA-rich Low_complexity Low_complexity 1 117 0 2664 53 0 0 chr1 204677043 204677346 -37987007 - AluY SINE Alu -8 303 1 395 278 90 8 chr1 204677906 204678039 -37986314 - L2 LINE L2 0 3313 3170 1885 142 3 34 chr1 204678062 204678357 -37985996 - AluJo SINE Alu -22 290 5 311 329 62 6 chr1 204678449 204678610 -37985743 - L2 LINE L2 -340 2973 2804 2125 105 0 7 chr1 204679538 204679815 -37984538 + AluSg SINE Alu 1 275 -35 423 0 0 0 chr1 204679816 204679863 -37984490 + (TC)n Simple_repeat Simple_repeat 2 48 0 279 0 0 0 chr1 204679862 204679893 -37984460 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 553 97 0 0 chr1 204679920 204679992 -37984361 + AluSg/x SINE Alu 217 288 -24 333 47 0 0 chr1 204679992 204680035 -37984318 + (TA)n Simple_repeat Simple_repeat 1 43 0 27 0 0 0 chr1 204680359 204680386 -37983967 + AT_rich Low_complexity Low_complexity 1 27 0 829 247 146 3 chr1 204680401 204680688 -37983665 + L2 LINE L2 1911 2238 -1076 682 169 120 14 chr1 204680688 204680768 -37983585 + MER45A DNA AcHobo 1 71 -1510 1986 148 0 3 chr1 204680768 204681052 -37983301 - AluJb SINE Alu -29 283 1 682 169 120 14 chr1 204681052 204681113 -37983240 + MER45A DNA AcHobo 71 157 -21 1214 258 28 35 chr1 204681129 204681365 -37982988 + L2 LINE L2 2231 2464 -850 2319 98 0 0 chr1 204681365 204681661 -37982692 - AluY SINE Alu -15 296 1 1214 258 28 35 chr1 204681661 204681823 -37982530 + L2 LINE L2 2464 2626 -688 5679 73 0 0 chr1 204681823 204682511 -37981842 + LTR12 LTR ERV1 1 688 0 21810 91 12 12 chr1 204682511 204682870 -37981483 + HERV9 LTR ERV1 1 358 -8041 5799 149 18 18 chr1 204682870 204683839 -37980514 - LTR5 LTR ERVK 0 969 1 21810 91 12 12 chr1 204683839 204687311 -37977042 + HERV9 LTR ERV1 358 3922 -4477 5547 104 4 1 chr1 204687412 204688173 -37976180 + HERV9 LTR ERV1 4182 4944 -3455 2030 115 3 26 chr1 204688200 204688540 -37975813 + HERV17 LTR ERV1 718 1049 -7577 1171 148 106 19 chr1 204688521 204688777 -37975576 + HERV17 LTR ERV1 1443 1720 -5176 * 4537 102 8 14 chr1 204688772 204689416 -37974937 + HERV17 LTR ERV1 7757 8396 -3 2682 59 226 133 chr1 204689417 204689957 -37974396 + LTR12 LTR ERV1 1 590 -124 32 57 0 0 chr1 204690147 204690200 -37974153 + AT_rich Low_complexity Low_complexity 1 53 0 603 231 149 30 chr1 204690208 204690503 -37973850 - HAL1 LINE L1 -2 2505 2176 632 280 0 0 chr1 204690964 204691132 -37973221 - HAL1 LINE L1 -732 1775 1608 511 221 126 52 chr1 204691152 204691518 -37972835 - HAL1 LINE L1 -1234 1273 881 307 355 45 0 chr1 204691527 204691637 -37972716 - HAL1 LINE L1 -2387 120 6 226 268 62 10 chr1 204692325 204692422 -37971931 + L2 LINE L2 3199 3300 -13 210 37 0 0 chr1 204692860 204692887 -37971466 + (CA)n Simple_repeat Simple_repeat 2 28 0 2075 114 3 36 chr1 204694585 204694891 -37969462 - AluSx SINE Alu -16 296 1 281 288 0 0 chr1 204696476 204696542 -37967811 + L3 LINE CR1 1511 1576 -1 510 352 31 46 chr1 204697081 204697469 -37966884 + L2 LINE L2 2686 3068 -204 237 319 14 14 chr1 204697681 204697753 -37966600 + L2 LINE L2 3201 3272 0 191 233 81 105 chr1 204698240 204698326 -37966027 + L2 LINE L2 3184 3267 -5 545 283 130 23 chr1 204699711 204699888 -37964465 + MER91A DNA MER1_type 1 196 0 382 316 110 45 chr1 204700104 204700440 -37963913 - L2 LINE L2 -20 3252 2895 329 228 123 0 chr1 204700501 204700591 -37963762 - MER5A DNA MER1_type -82 107 4 261 265 72 0 chr1 204700618 204700701 -37963652 + L2 LINE L2 3158 3246 -26 1964 117 7 0 chr1 204700743 204701017 -37963336 + AluSx SINE Alu 1 276 -36 681 197 39 8 chr1 204701235 204701362 -37962991 + FLAM_C SINE Alu 3 133 0 7951 128 44 56 chr1 204701931 204702191 -37962162 + L1MA3 LINE L1 2190 2452 -5113 1895 157 13 22 chr1 204702191 204702504 -37961849 + AluJo SINE Alu 1 310 -2 7951 128 44 56 chr1 204702504 204703836 -37960517 + L1MA3 LINE L1 2452 3799 -3766 2261 112 0 3 chr1 204703836 204704131 -37960222 + AluSg SINE Alu 1 294 -16 7951 128 44 56 chr1 204704131 204704298 -37960055 + L1MA3 LINE L1 3799 3911 -3654 2469 62 0 3 chr1 204704298 204704590 -37959763 + AluY SINE Alu 1 291 -20 7951 128 44 56 chr1 204704590 204704692 -37959661 + L1MA3 LINE L1 3911 4013 -3552 11110 155 18 15 chr1 204704797 204707538 -37956815 + L1MA3 LINE L1 4712 7459 -265 2007 158 0 0 chr1 204707641 204707939 -37956414 + AluSx SINE Alu 1 298 -14 1051 141 42 5 chr1 204707979 204708171 -37956182 + L1MA3 LINE L1 7526 7724 0 581 234 45 51 chr1 204708200 204708461 -37955892 + L1MC4a LINE L1 5634 5892 -229 2310 87 0 3 chr1 204708461 204708759 -37955594 + AluY SINE Alu 1 297 -14 581 234 45 51 chr1 204708759 204708821 -37955532 + L1MC4a LINE L1 5892 5953 -168 819 169 14 0 chr1 204708822 204708970 -37955383 + L1 LINE L1 5144 5293 -853 35337 88 5 47 chr1 204709070 204710989 -37953364 - L1P LINE L1 -1108 5038 3039 1371 85 0 0 chr1 204710989 204711165 -37953188 - AluY SINE Alu -2 309 134 35337 88 5 47 chr1 204711165 204714325 -37950028 - L1P LINE L1 -3107 3039 7 369 260 49 16 chr1 204714813 204714936 -37949417 + L2 LINE L2 2835 2961 -311 1718 231 8 23 chr1 204714941 204715335 -37949018 - MLT2C1 LTR ERVL 0 397 10 1153 205 38 4 chr1 204715339 204715578 -37948775 - ERVL-C1 LTR ERVL -7 5757 5511 23 0 0 0 chr1 204715620 204715643 -37948710 + AT_rich Low_complexity Low_complexity 1 23 0 279 290 0 0 chr1 204715749 204715811 -37948542 + L2 LINE L2 3230 3291 -22 180 0 0 0 chr1 204715817 204715837 -37948516 + (T)n Simple_repeat Simple_repeat 1 20 0 4153 178 64 9 chr1 204715960 204717640 -37946713 - L1MCa LINE L1 -2890 3536 1657 2179 123 0 0 chr1 204717640 204717941 -37946412 - AluSx SINE Alu -11 301 1 4153 178 64 9 chr1 204717941 204718076 -37946277 - L1MCa LINE L1 -4769 1657 1531 3426 136 149 27 chr1 204718076 204718739 -37945614 + Tigger2 DNA MER2_type 1 744 -1974 1452 118 61 8 chr1 204718805 204719050 -37945303 + Tigger2 DNA MER2_type 2461 2718 0 410 202 9 9 chr1 204719050 204719085 -37945268 - L1MCa LINE L1 -4894 1532 1498 2197 114 7 7 chr1 204719085 204719393 -37944960 - AluSx SINE Alu -4 308 1 410 202 9 9 chr1 204719393 204719466 -37944887 - L1MCa LINE L1 -4927 1499 1424 267 54 0 0 chr1 204719467 204719504 -37944849 + (TG)n Simple_repeat Simple_repeat 2 38 0 2215 105 0 3 chr1 204719504 204719800 -37944553 - AluSx SINE Alu -17 295 1 706 248 51 62 chr1 204719800 204719905 -37944448 - L1MEd LINE L1 -4785 1525 1420 2255 121 0 3 chr1 204719905 204720218 -37944135 - AluSx SINE Alu 0 312 1 706 248 51 62 chr1 204720218 204720519 -37943834 - L1MEd LINE L1 -4890 1420 1081 1652 177 21 0 chr1 204720557 204720840 -37943513 - AluJo SINE Alu -23 289 1 2112 96 7 4 chr1 204721109 204721412 -37942941 - AluSc SINE Alu 0 304 1 227 329 39 39 chr1 204721715 204721870 -37942483 - L1MEd LINE L1 -5886 233 79 2531 67 0 0 chr1 204721886 204722185 -37942168 - AluY SINE Alu -12 299 1 2220 102 7 3 chr1 204722339 204722633 -37941720 - AluSq SINE Alu -18 295 1 1639 120 110 41 chr1 204722807 204723099 -37941254 - AluSx SINE Alu 0 312 1 324 48 0 0 chr1 204723199 204723241 -37941112 + MADE1 DNA Mariner 1 42 -38 1276 123 0 11 chr1 204723377 204723564 -37940789 + AluSg/x SINE Alu 113 297 -13 1523 178 0 62 chr1 204723601 204723893 -37940460 - AluJo SINE Alu -34 278 5 29 47 0 0 chr1 204724002 204724045 -37940308 + AT_rich Low_complexity Low_complexity 1 43 0 2080 132 3 0 chr1 204724437 204724726 -37939627 - AluSx SINE Alu -20 292 3 2376 91 0 0 chr1 204725205 204725501 -37938852 + AluSx SINE Alu 1 296 -16 2161 116 3 0 chr1 204725757 204726058 -37938295 + AluSg SINE Alu 1 302 -8 344 309 53 67 chr1 204726155 204726440 -37937913 - L2 LINE L2 -1892 1422 1142 2226 108 9 19 chr1 204726894 204727210 -37937143 + AluSp SINE Alu 1 313 0 229 288 55 0 chr1 204727386 204727459 -37936894 + MER7C DNA MER2_type 2 78 -524 400 138 0 100 chr1 204727463 204727543 -37936810 - AluJ/FRAM SINE Alu -16 296 225 4209 223 20 27 chr1 204727672 204728760 -37935593 + L1 LINE L1 2853 3933 -2213 1408 108 0 0 chr1 204728761 204728946 -37935407 - AluSx SINE Alu -127 185 1 2242 113 3 0 chr1 204729041 204729351 -37935002 - AluSq SINE Alu -2 311 1 371 337 63 24 chr1 204729362 204729617 -37934736 + L2 LINE L2 1821 2085 -1229 * 470 273 118 0 chr1 204729605 204729766 -37934587 + L2 LINE L2 2193 2372 -942 303 367 45 49 chr1 204729809 204730023 -37934330 - L2 LINE L2 -2771 543 329 1722 159 20 23 chr1 204730023 204730324 -37934029 + AluJo SINE Alu 1 300 -12 303 367 45 49 chr1 204730324 204730395 -37933958 - L2 LINE L2 -2985 329 259 199 365 67 10 chr1 204730452 204730556 -37933797 + L2 LINE L2 3158 3267 -5 1501 126 111 0 chr1 204732292 204732585 -37931768 - Tigger4(Zombi) DNA MER2_type 0 2731 1 185 260 80 0 chr1 204732688 204732738 -37931615 - MIR SINE MIR -73 135 82 329 306 108 22 chr1 204733238 204733555 -37930798 + LTR16B LTR ERVL 14 333 -131 422 276 16 16 chr1 204733780 204733903 -37930450 + MIR SINE MIR 19 141 -67 710 171 0 36 chr1 204734292 204734385 -37929968 + L1MEc LINE L1 21 109 -6317 2285 108 0 0 chr1 204734385 204734681 -37929672 - AluSg SINE Alu -13 297 2 710 171 0 36 chr1 204734681 204734727 -37929626 + L1MEc LINE L1 109 155 -6271 1063 248 112 31 chr1 204735089 204735616 -37928737 - L1ME LINE L1 -4832 2023 1478 1926 135 50 0 chr1 204735632 204735713 -37928640 - MER1B DNA MER1_type -2394 318 242 2223 114 10 0 chr1 204735713 204736012 -37928341 - AluSx SINE Alu -10 302 1 1926 135 50 0 chr1 204736012 204736233 -37928120 - MER1B DNA MER1_type -2470 242 1 624 299 33 0 chr1 204736235 204736446 -37927907 - L1ME LINE L1 -5382 1477 1260 539 215 0 41 chr1 204736719 204736840 -37927513 - L1ME LINE L1 -5909 1038 923 471 224 73 35 chr1 204736879 204737138 -37927215 - L1MDa LINE L1 -4614 1926 1658 978 199 60 15 chr1 204737148 204737349 -37927004 - MER46A DNA MER2_type -26 210 1 386 267 37 44 chr1 204737352 204737487 -37926866 - L1M2c LINE L1 -4625 1758 1253 * 991 282 42 21 chr1 204737480 204737575 -37926778 + L1MEc LINE L1 2075 2167 -4440 2212 128 0 3 chr1 204737575 204737880 -37926473 + AluSq SINE Alu 1 304 -9 991 282 42 21 chr1 204737880 204738210 -37926143 + L1MEc LINE L1 2167 2509 -4098 735 149 0 149 chr1 204738212 204738373 -37925980 + FLAM_C SINE Alu 2 138 -5 393 221 117 17 chr1 204738376 204738642 -37925711 + L1MEc LINE L1 3317 3612 -2814 287 167 0 0 chr1 204738658 204738712 -37925641 - AluSp/q SINE Alu 0 303 250 2040 201 194 36 chr1 204738812 204738883 -37925470 - Zaphod DNA AcHobo -3377 654 596 2399 58 3 3 chr1 204738883 204739176 -37925177 + AluY SINE Alu 1 293 -18 2040 201 194 36 chr1 204739176 204739662 -37924691 - Zaphod DNA AcHobo -3435 596 9 2420 91 0 3 chr1 204740413 204740722 -37923631 + AluSq SINE Alu 1 308 -5 418 191 36 0 chr1 204741228 204741312 -37923041 - L1ME2 LINE L1 0 6164 6078 280 136 0 0 chr1 204741334 204741378 -37922975 + U5 snRNA snRNA 1 44 -72 233 121 0 0 chr1 204741393 204741426 -37922927 - L1ME1 LINE L1 -110 6056 6024 1982 112 14 3 chr1 204741437 204741724 -37922629 + AluSq SINE Alu 1 290 -23 33 0 0 0 chr1 204741934 204741967 -37922386 + GC_rich Low_complexity Low_complexity 1 33 0 9357 132 39 42 chr1 204742364 204743604 -37920749 - L1 LINE L1 -3075 4490 3248 1822 161 3 7 chr1 204743604 204743889 -37920464 + AluSx SINE Alu 1 284 -28 824 157 0 0 chr1 204743768 204743890 -37920463 + AluSg/x SINE Alu 164 311 0 * 202 39 0 0 chr1 204743890 204743916 -37920437 + (TAAA)n Simple_repeat Simple_repeat 4 112 0 9357 132 39 42 chr1 204743916 204744328 -37920025 - L1 LINE L1 -4317 3248 2836 1842 135 4 8 chr1 204744328 204744594 -37919759 - AluSx SINE Alu -25 287 23 9357 132 39 42 chr1 204744594 204745101 -37919252 - L1 LINE L1 -4729 2836 2329 1985 151 14 0 chr1 204745101 204745392 -37918961 - AluSx SINE Alu -17 295 1 9357 132 39 42 chr1 204745392 204745596 -37918757 - L1 LINE L1 -5236 2329 2126 2054 129 0 3 chr1 204745596 204745898 -37918455 - AluSg SINE Alu -9 301 1 9357 132 39 42 chr1 204745898 204746423 -37917930 - L1 LINE L1 -5439 2126 1596 2636 135 48 14 chr1 204746567 204746981 -37917372 + MSTA LTR MaLR 1 428 0 2368 97 3 0 chr1 204747473 204747783 -37916570 - AluSx SINE Alu -1 311 1 2480 47 0 10 chr1 204747914 204748211 -37916142 - AluY SINE Alu -10 301 8 311 260 10 39 chr1 204749093 204749197 -37915156 - MIR SINE MIR -32 230 130 282 276 13 0 chr1 204750496 204750572 -37913781 - MIR SINE MIR -21 241 165 483 301 31 41 chr1 204750579 204750775 -37913578 - LTR67 LTR ERVL -317 240 47 700 297 49 15 chr1 204750886 204751152 -37913201 - L2 LINE L2 -1344 1970 1696 316 384 101 9 chr1 204751339 204751685 -37912668 - L2 LINE L2 -1964 1350 973 1832 200 126 80 chr1 204751772 204751937 -37912416 + MLT1E LTR MaLR 1 157 -436 1924 135 83 0 chr1 204751937 204752225 -37912128 + AluSx SINE Alu 1 312 0 1832 200 126 80 chr1 204752225 204752624 -37911729 + MLT1E LTR MaLR 157 591 -2 645 222 74 37 chr1 204753513 204753650 -37910703 - L1MEd LINE L1 -5894 225 76 315 0 0 0 chr1 204753650 204753685 -37910668 + (CA)n Simple_repeat Simple_repeat 2 36 0 645 222 74 37 chr1 204753685 204753763 -37910590 - L1MEd LINE L1 -6043 76 2 2220 121 3 6 chr1 204753783 204754097 -37910256 - AluSq SINE Alu 0 313 1 1596 143 7 58 chr1 204754127 204754421 -37909932 - AluJo SINE Alu -15 297 19 1433 171 37 30 chr1 204754441 204754740 -37909613 - AluJo SINE Alu -11 301 1 380 291 43 40 chr1 204754784 204755002 -37909351 - L1M4c LINE L1 -3905 2945 2722 3220 134 6 30 chr1 204755015 204755543 -37908810 + L1PA15-16 LINE L1 2268 2782 -4067 302 258 76 106 chr1 204756271 204756469 -37907884 - L1M4c LINE L1 -5894 955 764 21 0 0 0 chr1 204758221 204758242 -37906111 + AT_rich Low_complexity Low_complexity 1 21 0 316 303 10 10 chr1 204759048 204759147 -37905206 - MIR SINE MIR -108 154 56 255 153 31 174 chr1 204759309 204759407 -37904946 - MIR3 SINE MIR -16 192 109 184 239 88 171 chr1 204759713 204759918 -37904435 - MIR SINE MIR -16 246 59 267 269 211 0 chr1 204759965 204760069 -37904284 - L2 LINE L2 -1 3312 3187 439 289 83 22 chr1 204761417 204761597 -37902756 - L3 LINE CR1 -1 1576 1386 205 337 51 0 chr1 204761683 204761781 -37902572 - L3 LINE CR1 -216 1361 1259 294 296 53 58 chr1 204761818 204762024 -37902329 - L1ME3A LINE L1 -1 6169 5965 201 171 0 0 chr1 204762215 204762250 -37902103 + T-rich Low_complexity Low_complexity 1 35 0 1001 231 146 16 chr1 204762356 204762664 -37901689 - L1ME3A LINE L1 -355 5815 5468 180 0 0 0 chr1 204762906 204762926 -37901427 + (T)n Simple_repeat Simple_repeat 1 20 0 1847 115 0 88 chr1 204763645 204763826 -37900527 - AluJb SINE Alu -11 301 160 2427 61 10 3 chr1 204763826 204764121 -37900232 - AluY SINE Alu -14 297 1 1847 115 0 88 chr1 204764121 204764269 -37900084 - AluJb SINE Alu -152 160 1 517 314 54 27 chr1 204765009 204765267 -37899086 + LTR33 LTR ERVL 2 266 -255 701 161 26 39 chr1 204765308 204765363 -37898990 + LTR33 LTR ERVL 365 419 -102 616 199 85 95 chr1 204765363 204765574 -37898779 - MER63A DNA MER1_type -1 209 1 701 161 26 39 chr1 204765574 204765673 -37898680 + LTR33 LTR ERVL 419 517 -4 1664 106 122 0 chr1 204765722 204765976 -37898377 - AluY SINE Alu -14 297 13 203 261 15 0 chr1 204766702 204766767 -37897586 + (TCTG)n Simple_repeat Simple_repeat 3 68 0 201 181 48 12 chr1 204766778 204766861 -37897492 + (TCTCTG)n Simple_repeat Simple_repeat 3 88 0 204 222 95 32 chr1 204767245 204767308 -37897045 + L2 LINE L2 3242 3308 -5 8489 113 3 3 chr1 204767386 204768205 -37896148 - L1PA8A LINE L1 -1 6130 5312 2293 68 7 10 chr1 204768205 204768497 -37895856 - AluY SINE Alu -20 291 1 8489 113 3 3 chr1 204768497 204769622 -37894731 - L1PA8A LINE L1 -818 5313 4187 2157 134 0 0 chr1 204769861 204770160 -37894193 + AluSq SINE Alu 1 299 -14 816 183 0 35 chr1 204770973 204771115 -37893238 - AluY SINE Alu -17 294 158 1939 102 0 0 chr1 204771246 204771500 -37892853 - AluY SINE Alu -57 254 1 252 266 125 0 chr1 204772807 204772871 -37891482 - MIR SINE MIR -87 121 50 449 217 26 102 chr1 204772981 204773299 -37891054 - MLT1E LTR MaLR -243 300 20 370 206 108 0 chr1 204774275 204774377 -37889976 + MLT2B1 LTR ERVL 1 113 -407 515 109 7 175 chr1 204774377 204774431 -37889922 - L1 LINE L1 -1490 4656 4595 1687 180 7 10 chr1 204774431 204774726 -37889627 - AluJo SINE Alu -18 294 1 515 109 7 175 chr1 204774726 204774784 -37889569 - L1 LINE L1 -1551 4595 4529 3260 78 54 5 chr1 204774784 204774825 -37889528 - MLT2A1 LTR ERVL 0 444 406 186 43 0 0 chr1 204774825 204774848 -37889505 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 249 33 0 0 chr1 204774847 204774877 -37889476 + (TA)n Simple_repeat Simple_repeat 1 30 0 3260 78 54 5 chr1 204774848 204775258 -37889095 - MLT2A1 LTR ERVL -38 406 1 515 109 7 175 chr1 204775258 204775281 -37889072 - L1 LINE L1 -1616 4530 4543 1903 243 76 52 chr1 204775388 204776335 -37888018 - L1MC4 LINE L1 -384 7658 6442 2163 112 0 14 chr1 204776698 204776993 -37887360 - AluSx SINE Alu -21 291 1 2597 203 56 47 chr1 204777265 204777608 -37886745 - Zaphod DNA AcHobo -8 4023 3685 2221 89 4 0 chr1 204777608 204777926 -37886427 - AluY SINE Alu 0 319 1 2597 203 56 47 chr1 204777926 204778309 -37886044 - Zaphod DNA AcHobo -346 3685 3289 813 215 46 46 chr1 204828987 204829206 -37835147 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 204830605 204830626 -37833727 + AT_rich Low_complexity Low_complexity 1 21 0 2087 143 0 0 chr1 204831022 204831316 -37833037 + AluSx SINE Alu 1 294 -18 309 390 35 4 chr1 204831320 204831548 -37832805 + HAL1 LINE L1 1373 1607 -900 507 95 0 0 chr1 204832671 204832745 -37831608 + (CA)n Simple_repeat Simple_repeat 2 75 0 1008 196 0 6 chr1 204832859 204833032 -37831321 - FAM SINE Alu -3 172 1 21 0 0 0 chr1 204833032 204833053 -37831300 + AT_rich Low_complexity Low_complexity 1 21 0 2013 122 3 10 chr1 204833069 204833364 -37830989 - AluSx SINE Alu -19 293 1 33 56 0 0 chr1 204833373 204833427 -37830926 + AT_rich Low_complexity Low_complexity 1 54 0 2381 96 3 0 chr1 204833669 204833972 -37830381 + AluSx SINE Alu 1 304 -8 274 173 48 48 chr1 204834718 204834739 -37829614 + (TA)n Simple_repeat Simple_repeat 2 22 -83 1801 176 3 7 chr1 204834739 204835041 -37829312 + AluJo SINE Alu 1 301 -11 274 173 48 48 chr1 204835041 204835123 -37829230 + (TA)n Simple_repeat Simple_repeat 21 105 0 764 158 6 92 chr1 204835654 204835818 -37828535 + FRAM SINE Alu 1 148 -28 1481 113 5 0 chr1 204836497 204836692 -37827661 - AluSx SINE Alu -116 196 1 476 335 64 63 chr1 204836786 204837446 -37826907 + L2 LINE L2 2346 3013 -259 1961 164 3 3 chr1 204837446 204837756 -37826597 - AluJb SINE Alu -2 310 1 476 335 64 63 chr1 204837756 204838008 -37826345 + L2 LINE L2 3013 3263 -9 331 357 71 34 chr1 204838161 204838539 -37825814 - L2 LINE L2 -8 3264 2873 2223 95 14 0 chr1 204839067 204839352 -37825001 + AluSq SINE Alu 1 289 -24 276 184 40 53 chr1 204840382 204840458 -37823895 + L2 LINE L2 3239 3313 0 980 184 60 0 chr1 204841010 204841211 -37823142 + MIR SINE MIR 2 214 -48 739 165 0 0 chr1 204841733 204841848 -37822505 + FLAM_A SINE Alu 1 115 -18 579 239 97 6 chr1 204842392 204842568 -37821785 + MIR SINE MIR 65 256 -6 2083 130 7 3 chr1 204842695 204842988 -37821365 - AluSx SINE Alu -18 294 1 953 263 39 41 chr1 204844446 204844784 -37819569 - LTR16A LTR ERVL -19 431 95 185 270 87 61 chr1 204845651 204845766 -37818587 + MIR SINE MIR 31 148 -114 195 220 0 0 chr1 204845796 204845846 -37818507 + CT-rich Low_complexity Low_complexity 6 55 0 332 237 9 79 chr1 204846194 204846308 -37818045 + L2 LINE L2 3206 3311 -2 236 245 234 0 chr1 204848348 204848442 -37815911 + L2 LINE L2 3157 3272 0 2728 80 8 0 chr1 204849515 204849867 -37814486 - THE1A LTR MaLR 0 355 1 187 368 68 26 chr1 204850123 204850240 -37814113 + L2 LINE L2 3191 3312 -1 446 282 58 34 chr1 204851200 204851406 -37812947 + L2 LINE L2 3102 3312 -1 228 320 0 13 chr1 204851561 204851636 -37812717 - MIR3 SINE MIR -133 75 2 1741 148 22 19 chr1 204852556 204852867 -37811486 + AluJo SINE Alu 1 312 0 262 241 224 9 chr1 204853476 204853592 -37810761 + MIR SINE MIR 120 260 -2 1010 124 12 6 chr1 204853668 204853837 -37810516 - L1MA7 LINE L1 0 6291 6122 291 292 67 33 chr1 204853849 204853969 -37810384 + L2 LINE L2 3169 3292 -21 597 275 90 53 chr1 204854567 204854677 -37809676 - MIR SINE MIR -2 260 156 2701 40 0 3 chr1 204854677 204855000 -37809353 - L1PA4 LINE L1 0 6155 5834 597 275 90 53 chr1 204855000 204855133 -37809220 - MIR SINE MIR -106 156 8 1980 109 0 34 chr1 204855970 204856286 -37808067 - AluSx SINE Alu 0 306 1 574 312 67 58 chr1 204856693 204857331 -37807022 - L2 LINE L2 -1305 2009 1366 253 276 66 26 chr1 204857398 204857474 -37806879 + L2 LINE L2 3184 3262 -10 580 354 152 16 chr1 204857560 204857989 -37806364 + L3 LINE CR1 1083 1569 -8 5187 145 18 15 chr1 204858363 204859186 -37805167 + LTR1B LTR ERV1 1 826 0 186 312 0 52 chr1 204859294 204859371 -37804982 - L3 LINE CR1 -224 1353 1281 371 259 101 14 chr1 204859374 204859513 -37804840 + MIR SINE MIR 92 242 -20 4417 180 33 20 chr1 204859907 204860475 -37803878 + MER21B LTR ERV1 1 583 -280 2410 111 10 79 chr1 204860475 204860880 -37803473 - MER51B LTR ERV1 0 377 1 4417 180 33 20 chr1 204860880 204861106 -37803247 + MER21B LTR ERV1 583 805 -58 2358 87 0 0 chr1 204861115 204861427 -37802926 + AluSx SINE Alu 1 312 0 1438 194 4 11 chr1 204864651 204864929 -37799424 + AluJo SINE Alu 1 276 -36 1054 109 30 65 chr1 204868304 204868505 -37795848 - L1MA10 LINE L1 -2 6332 6139 267 59 0 0 chr1 204868506 204868540 -37795813 - AluY SINE Alu -184 117 84 967 206 14 9 chr1 204868540 204868759 -37795594 - AluJo SINE Alu -92 220 1 297 217 24 48 chr1 204868785 204868868 -37795485 - MIR SINE MIR -64 144 64 1567 264 144 40 chr1 204868967 204869984 -37794369 - HAL1 LINE L1 -425 2082 961 531 326 16 50 chr1 204870006 204870429 -37793924 - HAL1 LINE L1 -2090 417 9 35 0 0 0 chr1 204870431 204870466 -37793887 + AT_rich Low_complexity Low_complexity 1 35 0 381 243 126 0 chr1 204870734 204870837 -37793516 + L1MC/D LINE L1 5454 5569 -2239 450 234 57 57 chr1 204870839 204870980 -37793373 + MIR SINE MIR 120 260 -2 211 287 133 46 chr1 204872056 204872251 -37792102 - L3b LINE CR1 -94 1489 1278 411 299 227 14 chr1 204873294 204873501 -37790852 - MIR SINE MIR 0 262 12 186 400 35 0 chr1 204873429 204873514 -37790839 + MIR3 SINE MIR 7 94 -114 * 555 315 73 0 chr1 204873919 204874084 -37790269 - MIR3 SINE MIR -6 202 26 306 219 82 27 chr1 204874146 204874219 -37790134 - MIR SINE MIR -76 186 110 274 352 56 0 chr1 204874299 204874424 -37789929 - L2 LINE L2 -7 3265 3134 229 220 20 0 chr1 204874425 204874475 -37789878 + (TG)n Simple_repeat Simple_repeat 2 52 0 1807 135 32 73 chr1 204876318 204876364 -37787989 + MLT1C LTR MaLR 142 188 -279 1673 157 40 0 chr1 204876364 204876638 -37787715 + AluSx SINE Alu 1 285 -27 1807 135 32 73 chr1 204876638 204876931 -37787422 + MLT1C LTR MaLR 188 467 0 506 137 11 0 chr1 204877057 204877152 -37787201 + GA-rich Low_complexity Low_complexity 1 96 0 254 283 87 38 chr1 204878113 204878297 -37786056 - L3 LINE CR1 -222 1355 1163 554 82 0 0 chr1 204878345 204878418 -37785935 - L1PA6 LINE L1 -3526 2620 2548 * 21579 58 17 2 chr1 204878415 204881843 -37782510 + L1PA6 LINE L1 2620 6127 -4 24 0 0 0 chr1 204881843 204881867 -37782486 + AT_rich Low_complexity Low_complexity 1 24 0 244 254 107 25 chr1 204881885 204882007 -37782346 - L3 LINE CR1 -759 818 687 432 228 137 56 chr1 204883267 204883464 -37780889 + MIR SINE MIR 13 225 -37 1045 143 18 0 chr1 204883532 204883700 -37780653 + MER5A DNA MER1_type 1 171 -18 526 90 26 0 chr1 204885035 204885113 -37779240 - MADE1 DNA Mariner 0 80 1 478 212 71 0 chr1 204885675 204885788 -37778565 + MIR SINE MIR 72 192 -70 1814 152 16 13 chr1 204886324 204886634 -37777719 - AluSx SINE Alu -1 311 1 1965 67 67 0 chr1 204886810 204887077 -37777276 + AluY SINE Alu 12 296 -15 1987 112 4 0 chr1 204887088 204887366 -37776987 + AluSp SINE Alu 3 281 -32 225 0 0 0 chr1 204887366 204887391 -37776962 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 386 223 122 22 chr1 204887517 204887535 -37776818 - L1MA10 LINE L1 -2 6332 6315 627 264 119 0 chr1 204887535 204887796 -37776557 - L1ME1 LINE L1 -19 6147 5856 2904 159 84 5 chr1 204887799 204888297 -37776056 - L1MB3 LINE L1 -12 6171 5619 2671 96 8 6 chr1 204888297 204888660 -37775693 + THE1B LTR MaLR 1 364 0 2904 159 84 5 chr1 204888660 204888744 -37775609 - L1MB3 LINE L1 -564 5619 5543 2186 103 0 3 chr1 204888744 204889054 -37775299 - AluSg SINE Alu -1 309 1 188 281 0 18 chr1 204890301 204890358 -37773995 + L2 LINE L2 3209 3264 -8 245 206 176 15 chr1 204890516 204890584 -37773769 + MLT1C LTR MaLR 6 84 -383 190 138 0 0 chr1 204890849 204890878 -37773475 - MIR SINE MIR -64 144 116 916 203 269 33 chr1 204891424 204891788 -37772565 + MLT1C LTR MaLR 17 466 -1 553 258 161 9 chr1 204892001 204892218 -37772135 - MIR SINE MIR -11 251 2 247 294 96 37 chr1 204892533 204892669 -37771684 + L2 LINE L2 3128 3271 -1 1412 179 55 18 chr1 204893564 204893736 -37770617 - AluJo SINE Alu -9 303 116 491 0 17 0 chr1 204893736 204893795 -37770558 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 1412 179 55 18 chr1 204893795 204893896 -37770457 - AluJo SINE Alu -196 116 20 974 9 0 0 chr1 204893941 204894053 -37770300 - L1PA2 LINE L1 0 6155 6044 329 309 114 0 chr1 204894544 204894693 -37769660 - MIR3 SINE MIR -33 175 10 877 142 0 8 chr1 204897253 204897387 -37766966 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr1 204901587 204901607 -37762746 + (GGGTG)n Simple_repeat Simple_repeat 5 24 0 241 289 22 11 chr1 204904476 204904566 -37759787 + MER5B DNA MER1_type 11 101 -77 440 290 124 32 chr1 204904785 204905002 -37759351 - MIR SINE MIR 0 262 26 351 305 51 8 chr1 204905470 204905588 -37758765 + MIR SINE MIR 24 146 -62 383 243 76 35 chr1 204906244 204906388 -37757965 + L2 LINE L2 2932 3081 -191 235 263 13 26 chr1 204906512 204906588 -37757765 + GA-rich Low_complexity Low_complexity 2 76 0 347 250 104 10 chr1 204906853 204906949 -37757404 + L2 LINE L2 3161 3265 -7 659 197 66 0 chr1 204908009 204908146 -37756207 + MER103 DNA DNA 1 146 -20 327 195 207 35 chr1 204909647 204909734 -37754619 + MIR SINE MIR 16 117 -91 201 303 14 46 chr1 204909745 204909864 -37754489 + MER5B DNA MER1_type 1 163 -26 * 213 229 21 125 chr1 204909816 204909912 -37754441 - MER5A DNA MER1_type -103 86 1 282 258 41 21 chr1 204911033 204911130 -37753223 + MIR SINE MIR 164 262 0 265 252 71 55 chr1 204911145 204911272 -37753081 - L2 LINE L2 -249 3023 2895 589 280 111 4 chr1 204911302 204911535 -37752818 - MIR SINE MIR -6 256 1 187 337 208 0 chr1 204912260 204912361 -37751992 - L3b LINE CR1 -26 1557 1436 661 199 109 65 chr1 204912477 204912753 -37751600 + MLT1C LTR MaLR 1 288 -179 212 345 33 15 chr1 204912960 204913084 -37751269 + MIR SINE MIR 17 141 -67 271 333 12 0 chr1 204915489 204915570 -37748783 + L2 LINE L2 3185 3266 -6 215 305 152 0 chr1 204915565 204915670 -37748683 + MIR SINE MIR 72 192 -70 * 540 256 195 60 chr1 204915688 204916386 -37747967 + LTR50 LTR ERVL 1 792 -3 384 290 113 17 chr1 204916845 204917033 -37747320 - MIR SINE MIR -37 225 26 489 229 197 11 chr1 204918557 204918740 -37745613 - MIR SINE MIR -19 243 27 198 281 195 39 chr1 204918993 204919121 -37745232 + MIR SINE MIR 106 253 -9 243 196 272 43 chr1 204919698 204919790 -37744563 - MIR SINE MIR -105 157 45 512 276 30 59 chr1 204920425 204920521 -37743832 - L1M4 LINE L1 -840 5306 5209 777 218 186 0 chr1 204920521 204920709 -37743644 - MER58A DNA MER1_type 0 224 2 512 276 30 59 chr1 204920709 204920815 -37743538 - L1M4 LINE L1 -937 5209 5110 2390 60 0 0 chr1 204920815 204921135 -37743218 - AluY SINE Alu 0 311 1 718 193 0 15 chr1 204921136 204921271 -37743082 - AluJo/FLAM SINE Alu -179 133 1 297 217 24 48 chr1 204921297 204921380 -37742973 - MIR SINE MIR -64 144 64 1567 264 144 40 chr1 204921479 204922496 -37741857 - HAL1 LINE L1 -425 2082 961 531 326 16 50 chr1 204922518 204922941 -37741412 - HAL1 LINE L1 -2090 417 9 35 0 0 0 chr1 204922943 204922978 -37741375 + AT_rich Low_complexity Low_complexity 1 35 0 381 243 126 0 chr1 204923246 204923349 -37741004 + L1MC/D LINE L1 5454 5569 -2239 450 234 57 57 chr1 204923351 204923492 -37740861 + MIR SINE MIR 120 260 -2 211 287 133 46 chr1 204924568 204924763 -37739590 - L3b LINE CR1 -94 1489 1278 411 299 227 14 chr1 204925806 204926013 -37738340 - MIR SINE MIR 0 262 12 186 400 35 0 chr1 204925941 204926026 -37738327 + MIR3 SINE MIR 7 94 -114 * 555 315 73 0 chr1 204926431 204926596 -37737757 - MIR3 SINE MIR -6 202 26 306 219 82 27 chr1 204926658 204926731 -37737622 - MIR SINE MIR -76 186 110 274 352 56 0 chr1 204926811 204926936 -37737417 - L2 LINE L2 -7 3265 3134 229 220 20 0 chr1 204926937 204926987 -37737366 + (TG)n Simple_repeat Simple_repeat 2 52 0 1807 135 32 73 chr1 204928830 204928876 -37735477 + MLT1C LTR MaLR 142 188 -279 1673 157 40 0 chr1 204928876 204929150 -37735203 + AluSx SINE Alu 1 285 -27 1807 135 32 73 chr1 204929150 204929443 -37734910 + MLT1C LTR MaLR 188 467 0 506 137 11 0 chr1 204929569 204929664 -37734689 + GA-rich Low_complexity Low_complexity 1 96 0 2548 126 78 5 chr1 204929861 204930274 -37734079 - MER7C DNA MER2_type 0 602 160 594 128 0 135 chr1 204930348 204930489 -37733864 - MER7C DNA MER2_type -426 176 55 276 257 100 79 chr1 204930517 204930657 -37733696 - MIR SINE MIR -106 156 14 536 294 88 75 chr1 204931355 204931743 -37732610 + L2 LINE L2 2880 3272 0 295 247 14 0 chr1 204933333 204933406 -37730947 - L2 LINE L2 -2 3311 3238 292 331 24 8 chr1 204933559 204933683 -37730670 + L2 LINE L2 2948 3073 -199 227 328 44 71 chr1 204934096 204934279 -37730074 + MIR SINE MIR 75 252 -10 190 328 82 0 chr1 204934308 204934369 -37729984 + MIR SINE MIR 45 110 -152 292 171 95 95 chr1 204934506 204934611 -37729742 - L2 LINE L2 0 3272 3168 823 150 0 27 chr1 204935283 204935430 -37728923 + FLAM_C SINE Alu 1 143 0 2224 98 0 0 chr1 204936050 204936347 -37728006 + AluSg SINE Alu 1 297 -13 500 108 62 170 chr1 204937622 204937722 -37726631 - MER33 DNA MER1_type -2262 323 252 1961 148 0 3 chr1 204937722 204938033 -37726320 + AluSx SINE Alu 1 310 -2 500 108 62 170 chr1 204938033 204938126 -37726227 - MER33 DNA MER1_type -2333 252 151 923 114 0 22 chr1 204938197 204938381 -37725972 + (TA)n Simple_repeat Simple_repeat 1 180 0 282 235 12 0 chr1 204938529 204938610 -37725743 + (TA)n Simple_repeat Simple_repeat 2 83 0 372 94 0 0 chr1 204938610 204938663 -37725690 + (CA)n Simple_repeat Simple_repeat 2 54 0 739 187 0 0 chr1 204938673 204938796 -37725557 - MER33 DNA MER1_type -201 123 1 1065 188 30 5 chr1 204939017 204939219 -37725134 - MER3 DNA MER1_type 0 209 3 2606 62 3 0 chr1 204939367 204939692 -37724661 + L1PA8 LINE L1 5844 6169 -3 237 309 40 32 chr1 204939764 204939890 -37724463 + MIR SINE MIR 104 230 -32 214 302 58 58 chr1 204940972 204941144 -37723209 - MIR3 SINE MIR -21 187 16 1224 45 26 0 chr1 204941626 204941815 -37722538 + L1PA4 LINE L1 5996 6155 0 359 243 69 83 chr1 204944060 204944175 -37720178 - MIR SINE MIR -66 196 82 508 219 179 7 chr1 204944175 204944326 -37720027 + MER5B DNA MER1_type 2 178 0 359 243 69 83 chr1 204944326 204944354 -37719999 - MIR SINE MIR -180 82 55 337 328 66 66 chr1 204945300 204945559 -37718794 - L2 LINE L2 0 3272 3014 213 343 132 15 chr1 204945690 204945894 -37718459 + L2 LINE L2 2828 3055 -217 657 159 9 9 chr1 204947345 204947458 -37716895 - FLAM_C SINE Alu -20 123 11 266 280 56 0 chr1 204947963 204948070 -37716283 + MER5A DNA MER1_type 6 118 -71 311 241 12 0 chr1 204950088 204950171 -37714182 + MIR SINE MIR 179 262 0 363 244 43 26 chr1 204951273 204951388 -37712965 - MIR SINE MIR -145 117 1 2006 162 40 3 chr1 204952555 204952907 -37711446 - MLT1A1 LTR MaLR 0 365 1 360 0 0 0 chr1 204953920 204953960 -37710393 + (CA)n Simple_repeat Simple_repeat 1 40 0 228 208 0 0 chr1 204954768 204954816 -37709537 + MIR SINE MIR 150 197 -65 181 301 54 94 chr1 204954906 204955109 -37709244 + L2 LINE L2 2774 2968 -346 426 88 0 0 chr1 204955369 204955437 -37708916 + (TG)n Simple_repeat Simple_repeat 1 68 0 261 215 0 0 chr1 204955733 204955791 -37708562 + (CA)n Simple_repeat Simple_repeat 2 62 -4 198 0 0 0 chr1 204955791 204955813 -37708540 + (GA)n Simple_repeat Simple_repeat 2 23 0 261 215 0 0 chr1 204955813 204955819 -37708534 + (CA)n Simple_repeat Simple_repeat 61 66 0 972 208 0 0 chr1 204956012 204956180 -37708173 - FAM SINE Alu -7 168 1 1764 94 24 20 chr1 204956275 204956529 -37707824 + AluSp SINE Alu 39 293 -20 1783 242 171 27 chr1 204957430 204958254 -37706099 + L2 LINE L2 2128 3062 -251 261 320 113 0 chr1 204958264 204958361 -37705992 + L2 LINE L2 3163 3270 -2 305 312 30 50 chr1 204958469 204958524 -37705829 + LTR67 LTR ERVL 361 416 -141 1960 138 16 16 chr1 204958524 204958836 -37705517 - AluJo SINE Alu 0 312 1 305 312 30 50 chr1 204958836 204958979 -37705374 + LTR67 LTR ERVL 416 555 -2 235 156 22 0 chr1 204959173 204959218 -37705135 - MIR SINE MIR -60 148 103 252 0 0 0 chr1 204960675 204960703 -37703650 + (T)n Simple_repeat Simple_repeat 1 28 0 243 204 0 0 chr1 204962805 204962859 -37701494 + (TG)n Simple_repeat Simple_repeat 2 55 0 532 199 14 89 chr1 204964271 204964334 -37700019 - MER5A DNA MER1_type 0 189 123 2295 100 0 0 chr1 204964334 204964645 -37699708 + AluSg SINE Alu 1 311 0 532 199 14 89 chr1 204964645 204964726 -37699627 - MER5A DNA MER1_type -66 123 55 2098 119 0 3 chr1 204964891 204965176 -37699177 + AluSx SINE Alu 1 284 -28 406 267 66 6 chr1 204966269 204966426 -37697927 - MIR SINE MIR -59 149 19 2050 119 51 0 chr1 204966523 204966817 -37697536 - AluSx SINE Alu -3 309 1 464 241 110 7 chr1 204969466 204969611 -37694742 + MER5A DNA MER1_type 28 187 -2 2255 120 0 0 chr1 204969713 204970013 -37694340 - AluSx SINE Alu -12 300 1 349 236 0 45 chr1 204970140 204970250 -37694103 + MIR SINE MIR 108 212 -50 187 263 248 44 chr1 204970797 204970934 -37693419 - MIR3 SINE MIR -14 194 30 548 250 9 0 chr1 204971490 204971602 -37692751 + MER81 DNA DNA 1 113 -1 340 280 0 30 chr1 204972640 204972740 -37691613 + GA-rich Low_complexity Low_complexity 3 99 0 1570 230 47 47 chr1 204972773 204973220 -37691133 + MLT1C LTR MaLR 19 465 -2 2380 81 0 16 chr1 204973931 204974240 -37690113 - AluY SINE Alu -7 304 1 724 188 28 21 chr1 204974447 204974591 -37689762 + MSTA LTR MaLR 1 145 -281 1695 146 15 4 chr1 204974695 204974963 -37689390 + MSTA LTR MaLR 158 428 0 426 101 0 0 chr1 204974968 204975037 -37689316 + (CA)n Simple_repeat Simple_repeat 2 70 0 221 303 34 34 chr1 204977486 204977575 -37686778 + L2 LINE L2 2976 3064 -208 1308 218 17 44 chr1 204978317 204978615 -37685738 + L1PA16 LINE L1 444 733 -6116 15015 195 18 48 chr1 204979068 204979289 -37685064 + L1PA16 LINE L1 1414 1640 -5229 189 0 0 0 chr1 204979289 204979310 -37685043 + (CA)n Simple_repeat Simple_repeat 2 22 0 15015 195 18 48 chr1 204979310 204979985 -37684368 + L1PA16 LINE L1 1640 2334 -4535 1910 159 76 6 chr1 204979985 204980300 -37684053 + MER1B DNA MER1_type 1 337 0 15015 195 18 48 chr1 204980300 204980699 -37683654 + L1PA16 LINE L1 2334 2744 -4125 1984 127 57 73 chr1 204980699 204981069 -37683284 - THE1B LTR MaLR 0 364 1 15015 195 18 48 chr1 204981069 204981103 -37683250 + L1PA16 LINE L1 2744 2777 -4092 2869 3 7 0 chr1 204981103 204981409 -37682944 + AluYa5 SINE Alu 1 308 -3 15015 195 18 48 chr1 204981409 204985545 -37678808 + L1PA16 LINE L1 2777 6867 -2 204 369 48 10 chr1 204985551 204985654 -37678699 + MIR SINE MIR 18 124 -84 2301 98 0 3 chr1 204985913 204986219 -37678134 + AluSx SINE Alu 1 305 -7 1995 129 4 0 chr1 204986377 204986648 -37677705 + AluSp SINE Alu 1 272 -41 225 245 0 0 chr1 204988318 204988367 -37675986 + (CAT)n Simple_repeat Simple_repeat 3 51 0 416 301 89 0 chr1 204988416 204988539 -37675814 - MIR SINE MIR -117 145 12 238 236 127 0 chr1 204988788 204988843 -37675510 - MIR SINE MIR -179 83 22 2872 55 3 8 chr1 204990148 204990512 -37673841 + L1PA8 LINE L1 5806 6167 -5 461 296 13 0 chr1 204990515 204990683 -37673670 - MIR SINE MIR -60 148 8 322 281 43 43 chr1 204991043 204991182 -37673171 + MIR SINE MIR 66 204 -58 426 310 86 20 chr1 204991773 204991970 -37672383 - MIR SINE MIR -17 245 36 546 314 159 13 chr1 204992730 204993039 -37671314 - L3 LINE CR1 -16 1561 1208 183 274 32 16 chr1 204993412 204993474 -37670879 - MIR3 SINE MIR -34 174 112 187 296 105 47 chr1 204994522 204994694 -37669659 - L2 LINE L2 -787 2527 2346 378 248 221 0 chr1 204995906 204996132 -37668221 + L2 LINE L2 3025 3300 -13 1962 172 8 24 chr1 204996517 204996890 -37667463 + MLT1A1 LTR MaLR 1 624 -2 1253 218 108 80 chr1 204997931 204998432 -37665921 + MLT1H1 LTR MaLR 41 555 0 1443 145 8 34 chr1 204998443 204998678 -37665675 + AluJo SINE Alu 74 302 -10 533 272 204 31 chr1 205000564 205000858 -37663495 - L2 LINE L2 -4 3268 2924 2448 39 4 0 chr1 205000895 205001194 -37663159 + AluY SINE Alu 1 300 0 232 319 127 12 chr1 205002029 205002195 -37662158 + L2 LINE L2 2852 3036 -236 203 235 78 0 chr1 205002289 205002340 -37662013 + L2 LINE L2 3214 3268 -4 527 241 24 42 chr1 205002357 205002426 -37661927 + MIR SINE MIR 92 161 -101 2125 168 24 51 chr1 205002426 205002572 -37661781 + MLT1A1 LTR MaLR 1 149 -216 2202 136 0 0 chr1 205002572 205002881 -37661472 + AluSq SINE Alu 1 309 -4 2125 168 24 51 chr1 205002881 205003109 -37661244 + MLT1A1 LTR MaLR 149 365 0 527 241 24 42 chr1 205003109 205003205 -37661148 + MIR SINE MIR 161 254 -8 241 281 21 62 chr1 205003220 205003316 -37661037 - MIR SINE MIR -77 185 94 204 316 74 0 chr1 205003408 205003503 -37660850 - L2 LINE L2 -9 3263 3162 1226 249 123 31 chr1 205003531 205003980 -37660373 + MLT1J LTR MaLR 22 511 0 1646 131 41 8 chr1 205005527 205005771 -37658582 - AluSg SINE Alu -15 295 44 232 326 53 15 chr1 205006221 205006353 -37658000 + L2 LINE L2 1808 1944 -1370 315 256 186 39 chr1 205006359 205006515 -37657838 + MER104 DNA Tc2 2 180 0 754 308 114 61 chr1 205006568 205007653 -37656700 + L2 LINE L2 2027 3235 -37 337 239 103 32 chr1 205008264 205008419 -37655934 - L1ME4a LINE L1 -6 6115 5950 2922 3 0 0 chr1 205008812 205009123 -37655230 - AluYa5 SINE Alu 0 311 1 24 0 0 0 chr1 205009804 205009828 -37654525 + AT_rich Low_complexity Low_complexity 1 24 0 1032 170 0 50 chr1 205010031 205010213 -37654140 - FAM SINE Alu -2 173 1 767 181 50 22 chr1 205010633 205010815 -37653538 + MER53 DNA DNA 3 189 0 242 245 264 45 chr1 205011418 205011573 -37652780 + MER5A DNA MER1_type 1 189 0 233 339 113 17 chr1 205011587 205011764 -37652589 + L2 LINE L2 2859 3052 -220 27 29 0 0 chr1 205012034 205012068 -37652285 + AT_rich Low_complexity Low_complexity 1 34 0 567 273 100 35 chr1 205013398 205013629 -37650724 - MER112 DNA MER1_type -13 247 2 384 192 13 0 chr1 205014070 205014148 -37650205 + L2 LINE L2 3227 3305 -8 1579 176 36 33 chr1 205015237 205015568 -37648785 - AluJb SINE Alu 0 312 1 203 138 0 0 chr1 205015753 205015782 -37648571 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 2306 83 24 0 chr1 205015962 205016084 -37648269 + AluY SINE Alu 1 119 -192 441 0 0 0 chr1 205016084 205016133 -37648220 + (CA)n Simple_repeat Simple_repeat 2 50 0 2306 83 24 0 chr1 205016133 205016300 -37648053 + AluY SINE Alu 119 297 -14 520 307 90 20 chr1 205016315 205016559 -37647794 + MIR SINE MIR 2 262 0 880 340 104 26 chr1 205016680 205017514 -37646839 + L2 LINE L2 2367 3272 0 1106 268 191 31 chr1 205018007 205018171 -37646182 - L2 LINE L2 -89 3224 3088 2566 60 0 0 chr1 205018171 205018470 -37645883 - AluY SINE Alu -12 299 1 1106 268 191 31 chr1 205018470 205018991 -37645362 - L2 LINE L2 -225 3088 2463 528 231 72 76 chr1 205019043 205019294 -37645059 - L2 LINE L2 -2 3311 3062 * 723 269 38 19 chr1 205019293 205019505 -37644848 - MIR SINE MIR -46 216 1 236 297 69 40 chr1 205019659 205019760 -37644593 - MIR SINE MIR -156 106 3 183 312 90 53 chr1 205020098 205020287 -37644066 + L2 LINE L2 2897 3092 -180 184 266 13 63 chr1 205020394 205020473 -37643880 + MIR SINE MIR 175 249 -13 371 347 111 9 chr1 205021233 205021458 -37642895 + MIR SINE MIR 15 262 0 373 263 23 114 chr1 205021511 205021686 -37642667 - MIR3 SINE MIR -15 193 35 335 259 208 51 chr1 205022323 205022539 -37641814 + MIR SINE MIR 11 260 -2 194 244 0 22 chr1 205023087 205023132 -37641221 - MIR SINE MIR -58 150 107 625 76 0 0 chr1 205023241 205023320 -37641033 + L1PA8 LINE L1 6090 6168 -4 1964 132 14 3 chr1 205023501 205023790 -37640563 - AluSx SINE Alu -20 292 1 1071 195 92 23 chr1 205023810 205024071 -37640282 - MER96B DNA MER1_type? 0 417 139 208 259 136 12 chr1 205024201 205024282 -37640071 + MER5B DNA MER1_type 88 178 0 371 345 41 0 chr1 205024984 205025129 -37639224 - L2 LINE L2 -6 3266 3116 247 315 177 31 chr1 205025401 205025655 -37638698 + L2 LINE L2 3015 3264 -8 693 207 14 0 chr1 205025687 205025832 -37638521 - L1MA10 LINE L1 -19 6315 6169 402 209 78 52 chr1 205025840 205025993 -37638360 - L1ME2 LINE L1 -142 6022 5866 * 4482 167 71 11 chr1 205025965 205026972 -37637381 - L1MB8 LINE L1 -1 6177 5119 248 163 98 98 chr1 205026969 205027061 -37637292 - L1ME LINE L1 -260 5904 5813 * 1325 170 114 104 chr1 205027068 205027111 -37637242 - L1MD2 LINE L1 -5 6237 6196 1956 102 0 15 chr1 205027111 205027209 -37637144 + AluSx SINE Alu 37 135 -177 225 0 0 0 chr1 205027209 205027234 -37637119 + (TA)n Simple_repeat Simple_repeat 2 26 0 1956 102 0 15 chr1 205027234 205027401 -37636952 + AluSx SINE Alu 135 298 -14 1325 170 114 104 chr1 205027401 205027702 -37636651 - L1MD2 LINE L1 -46 6196 5915 1865 139 10 36 chr1 205027702 205028034 -37636319 + AluSx SINE Alu 1 324 0 1325 170 114 104 chr1 205028034 205028175 -37636178 - L1MD2 LINE L1 -327 5915 5777 839 145 0 51 chr1 205028937 205029075 -37635278 - FLAM_C SINE Alu -2 131 1 4730 244 140 29 chr1 205029580 205029666 -37634687 - HAL1 LINE L1 -562 1945 1870 4371 157 51 4 chr1 205029666 205030356 -37633997 - MER72 LTR ERV1 0 722 1 4730 244 140 29 chr1 205030356 205032007 -37632346 - HAL1 LINE L1 -637 1870 16 214 263 289 0 chr1 205032146 205032260 -37632093 - MIR SINE MIR -83 179 33 665 199 112 12 chr1 205032288 205032449 -37631904 - MER5A DNA MER1_type -6 183 7 490 263 43 48 chr1 205033267 205033476 -37630877 + MIR SINE MIR 26 233 -29 2615 123 28 11 chr1 205034116 205034474 -37629879 + THE1B LTR MaLR 1 364 0 224 302 243 0 chr1 205034596 205034765 -37629588 + MIR SINE MIR 53 262 0 305 316 60 8 chr1 205035002 205035135 -37629218 + MIR SINE MIR 117 256 -6 960 190 22 0 chr1 205035414 205035598 -37628755 + MER5A DNA MER1_type 2 189 0 2436 144 110 100 chr1 205035864 205036466 -37627887 + LTR36 LTR ERV1 4 611 0 22 0 0 0 chr1 205037341 205037363 -37626990 + AT_rich Low_complexity Low_complexity 1 22 0 7210 69 7 1 chr1 205037552 205039078 -37625275 + L1PA6 LINE L1 4622 6154 0 1058 168 199 31 chr1 205039085 205039311 -37625042 + MLT1A1 LTR MaLR 48 311 -54 1833 129 66 0 chr1 205040229 205040500 -37623853 + AluSx SINE Alu 1 289 -23 213 39 0 0 chr1 205040718 205040744 -37623609 + (A)n Simple_repeat Simple_repeat 1 26 0 233 218 37 18 chr1 205041062 205041132 -37623221 - MIR SINE MIR -58 150 76 495 90 53 15 chr1 205043538 205043671 -37620682 + (TA)n Simple_repeat Simple_repeat 1 138 0 367 246 212 8 chr1 205043808 205043926 -37620427 + MER5A DNA MER1_type 48 189 0 1546 165 12 4 chr1 205046214 205046462 -37617891 - AluJo SINE Alu -62 250 1 272 278 100 11 chr1 205046519 205046609 -37617744 - L2 LINE L2 -12 3260 3163 247 331 83 25 chr1 205047096 205047217 -37617136 - MIR3 SINE MIR -5 203 76 1265 269 156 36 chr1 205048501 205049007 -37615346 - MLT1G1 LTR MaLR -24 571 5 418 298 66 28 chr1 205049056 205049237 -37615116 - MIR SINE MIR -27 235 48 2947 168 27 16 chr1 205049825 205050795 -37613558 + L1MB8 LINE L1 4871 5848 -330 203 174 47 47 chr1 205050966 205051052 -37613301 + A-rich Low_complexity Low_complexity 4 89 0 2047 108 3 42 chr1 205051266 205051572 -37612781 + AluSx SINE Alu 1 294 -18 400 264 36 18 chr1 205052464 205052574 -37611779 + MIR SINE MIR 25 136 -72 1732 194 18 3 chr1 205052607 205052947 -37611406 - MER7A DNA MER2_type -3 343 1 750 318 68 33 chr1 205052947 205053406 -37610947 - L2 LINE L2 -18 3295 2821 200 265 0 0 chr1 205053438 205053487 -37610866 + L2 LINE L2 3217 3265 -7 21 0 0 0 chr1 205053512 205053533 -37610820 + AT_rich Low_complexity Low_complexity 1 21 0 202 327 137 18 chr1 205054206 205054374 -37609979 + MIR SINE MIR 60 247 -15 664 242 144 23 chr1 205054817 205055032 -37609321 + MIR SINE MIR 19 259 -3 225 246 135 56 chr1 205055197 205055323 -37609030 + MER5B DNA MER1_type 6 141 -37 595 208 173 11 chr1 205056223 205056543 -37607810 + MLT1F LTR MaLR 138 567 0 1972 187 86 49 chr1 205056634 205056742 -37607611 + MLT1D LTR MaLR 1 104 -401 2284 113 0 0 chr1 205056742 205057044 -37607309 + AluSg SINE Alu 1 302 -8 1972 187 86 49 chr1 205057044 205057422 -37606931 + MLT1D LTR MaLR 104 505 0 414 135 25 7 chr1 205057580 205057660 -37606693 - MLT1A2 LTR MaLR -280 94 14 308 226 165 17 chr1 205057697 205057812 -37606541 - MER97a DNA MER1_type? -762 132 1 450 0 0 0 chr1 205058191 205058241 -37606112 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 969 164 0 0 chr1 205058243 205058389 -37605964 - AluJo SINE Alu -30 282 137 622 233 8 8 chr1 205058920 205059049 -37605304 + MER45A DNA AcHobo 50 178 0 219 341 63 85 chr1 205059049 205059415 -37604938 + L2 LINE L2 2911 3268 -4 1037 240 24 16 chr1 205059976 205060226 -37604127 - MIR SINE MIR -3 259 8 752 198 0 0 chr1 205060359 205060485 -37603868 - AluJo SINE Alu -182 130 5 256 190 52 0 chr1 205060564 205060622 -37603731 - Charlie1 DNA MER1_type -4 2757 2697 238 136 0 0 chr1 205060618 205060662 -37603691 + Charlie1 DNA MER1_type 2634 2677 -84 * 3259 183 41 6 chr1 205060731 205061463 -37602890 - Charlie1 DNA MER1_type -87 2674 1917 22 35 0 0 chr1 205061812 205061841 -37602512 + AT_rich Low_complexity Low_complexity 1 29 0 410 254 47 104 chr1 205061996 205062118 -37602235 + MIR SINE MIR 11 120 -142 1783 147 29 23 chr1 205062118 205062424 -37601929 - AluSx SINE Alu -4 308 1 410 254 47 104 chr1 205062424 205062494 -37601859 + MIR SINE MIR 120 192 -70 185 200 125 0 chr1 205062934 205062974 -37601379 + L2 LINE L2 3264 3308 -5 596 197 301 17 chr1 205063686 205063925 -37600428 + L2 LINE L2 2641 2947 -367 2568 108 12 42 chr1 205064084 205064493 -37599860 + L1PA11 LINE L1 5770 6166 -8 181 26 53 53 chr1 205064893 205064931 -37599422 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 257 70 47 0 chr1 205065169 205065212 -37599141 + A-rich Low_complexity Low_complexity 2 46 0 187 327 0 0 chr1 205067403 205067458 -37596895 - L2 LINE L2 -8 3264 3210 999 126 0 14 chr1 205069138 205069281 -37595072 + AluSc SINE Alu 1 141 -168 5482 39 0 0 chr1 205069281 205070008 -37594345 + L1P LINE L1 2795 3521 -2625 665 242 99 10 chr1 205070160 205070257 -37594096 - L1MEc LINE L1 -5453 943 856 354 23 0 0 chr1 205070257 205070300 -37594053 + (TG)n Simple_repeat Simple_repeat 1 43 0 665 242 99 10 chr1 205070300 205070495 -37593858 - L1MEc LINE L1 -5540 856 625 314 308 87 23 chr1 205070557 205070729 -37593624 - L1MEc LINE L1 -5837 559 377 541 308 86 18 chr1 205070741 205071020 -37593333 - L1MEc LINE L1 -6063 333 36 400 301 45 23 chr1 205071663 205071796 -37592557 + MIR SINE MIR 36 171 -91 5798 42 0 0 chr1 205071796 205072679 -37591674 + L1PA4 LINE L1 5114 5996 -159 21 0 0 0 chr1 205073808 205073829 -37590524 + AT_rich Low_complexity Low_complexity 1 21 0 1424 168 25 70 chr1 205073836 205074151 -37590202 - AluJo SINE Alu -11 301 1 229 204 23 0 chr1 205074403 205074447 -37589906 + MER5B DNA MER1_type 126 170 -8 408 283 11 62 chr1 205074451 205074628 -37589725 + MLT1L LTR MaLR 146 313 -302 468 279 56 6 chr1 205074708 205074869 -37589484 + MLT1L LTR MaLR 437 605 -10 249 212 29 80 chr1 205074992 205075129 -37589224 + L1P4 LINE L1 5680 5809 -352 190 154 0 39 chr1 205075174 205075226 -37589127 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 207 269 19 0 chr1 205075495 205075547 -37588806 + GA-rich Low_complexity Low_complexity 1 53 0 498 313 142 53 chr1 205076192 205076406 -37587947 - L3 LINE CR1 -75 1502 1308 950 178 51 10 chr1 205076406 205076603 -37587750 + MER3 DNA MER1_type 5 209 0 498 313 142 53 chr1 205076603 205076803 -37587550 - L3 LINE CR1 -269 1308 1051 201 227 23 0 chr1 205076866 205076910 -37587443 + L2 LINE L2 3255 3299 -14 183 80 0 0 chr1 205077467 205077492 -37586861 + (TA)n Simple_repeat Simple_repeat 1 25 0 235 154 0 0 chr1 205077833 205077872 -37586481 + MLT1A2 LTR MaLR 1 39 -335 6058 25 1 0 chr1 205077872 205079094 -37585259 + L1PA3 LINE L1 4766 5988 -167 24 0 0 0 chr1 205079194 205079218 -37585135 + AT_rich Low_complexity Low_complexity 1 24 0 1238 133 0 0 chr1 205079218 205079391 -37584962 + AluSg/x SINE Alu 125 297 -15 410 212 106 0 chr1 205079391 205079504 -37584849 - L1MD2 LINE L1 -40 6319 6195 592 205 200 5 chr1 205079505 205079690 -37584663 - L1MD2 LINE L1 -215 6144 5924 2171 116 3 3 chr1 205079692 205079993 -37584360 + AluSx SINE Alu 1 301 -11 273 291 84 27 chr1 205080013 205080418 -37583935 + L1M4 LINE L1 4342 4769 -1377 212 267 0 78 chr1 205080471 205080587 -37583766 + L2 LINE L2 2316 2422 -892 343 341 41 8 chr1 205081915 205082038 -37582315 + L2 LINE L2 3168 3294 -19 6330 236 55 12 chr1 205082263 205084359 -37579994 + L1M4 LINE L1 2404 4588 -1558 3301 131 9 4 chr1 205084462 205084990 -37579363 + L1MC1 LINE L1 5802 6332 -1 634 279 45 11 chr1 205086288 205086467 -37577886 + MIR SINE MIR 28 212 -50 413 301 28 53 chr1 205087181 205087352 -37577001 - MIR SINE MIR -63 145 11 24490 123 14 73 chr1 205087899 205092841 -37571512 + L1P LINE L1 13 4666 -1480 2417 241 57 90 chr1 205092943 205094228 -37570125 - L1MEc LINE L1 -4801 1595 354 1091 207 35 28 chr1 205094230 205094567 -37569786 + MSTD LTR MaLR 1 396 0 715 214 97 83 chr1 205094568 205094858 -37569495 - L1MEc LINE L1 -6041 355 62 260 269 0 43 chr1 205096387 205096480 -37567873 + GA-rich Low_complexity Low_complexity 2 90 0 1294 186 85 103 chr1 205098732 205099264 -37565089 + Charlie1b DNA MER1_type 2 523 0 627 290 54 18 chr1 205099319 205099540 -37564813 - MIR SINE MIR -23 239 11 288 362 57 0 chr1 205099690 205099795 -37564558 - L2 LINE L2 -24 3248 3138 647 270 122 20 chr1 205100669 205101062 -37563291 + L2 LINE L2 2217 2649 -665 293 331 40 13 chr1 205102386 205102537 -37561816 + L2 LINE L2 2521 2675 -639 529 281 35 69 chr1 205104392 205104595 -37559758 - MIR SINE MIR -13 249 54 656 212 151 11 chr1 205104825 205105004 -37559349 + MIR SINE MIR 59 262 0 186 322 25 54 chr1 205105377 205105488 -37558865 + MIR SINE MIR 17 137 -71 525 200 90 13 chr1 205106577 205106732 -37557621 + L1M4 LINE L1 5084 5250 -896 182 205 0 0 chr1 205107872 205107911 -37556442 + L2 LINE L2 3265 3303 -10 211 244 213 55 chr1 205109181 205109308 -37555045 - MIR SINE MIR -112 150 4 180 0 0 0 chr1 205109927 205109947 -37554406 + (A)n Simple_repeat Simple_repeat 1 20 0 503 324 51 4 chr1 205110232 205110464 -37553889 + MIR SINE MIR 11 262 0 24 0 0 0 chr1 205111040 205111064 -37553289 + AT_rich Low_complexity Low_complexity 1 24 0 547 0 0 0 chr1 205111155 205111219 -37553134 + L1PA2 LINE L1 6091 6154 -1 394 259 63 25 chr1 205111672 205111808 -37552545 + MIR SINE MIR 39 177 -62 260 323 0 10 chr1 205112369 205112465 -37551888 - MIR SINE MIR -154 108 14 999 267 102 29 chr1 205113378 205113752 -37550601 + MLT1J LTR MaLR 1 401 -110 195 188 0 0 chr1 205113905 205113937 -37550416 - L2 LINE L2 -10 3262 3231 295 338 63 53 chr1 205114822 205115029 -37549324 + L2 LINE L2 3057 3265 -7 566 308 62 5 chr1 205116226 205116421 -37547932 + MIR SINE MIR 48 253 -9 2081 146 7 0 chr1 205116511 205116820 -37547533 + AluSx SINE Alu 1 311 -1 843 183 0 0 chr1 205116832 205117012 -37547341 + GA-rich Low_complexity Low_complexity 1 180 0 186 71 0 0 chr1 205117123 205117151 -37547202 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 675 157 24 18 chr1 205118444 205118610 -37545743 - Charlie5 DNA MER1_type -66 2546 2380 920 166 104 0 chr1 205118678 205118871 -37545482 + L1MA9 LINE L1 6069 6281 -31 637 267 74 23 chr1 205118885 205119143 -37545210 + L1ME4a LINE L1 5843 6113 -8 260 217 101 0 chr1 205119985 205120054 -37544299 - L1ME LINE L1 -260 5861 5786 231 206 130 92 chr1 205120128 205120312 -37544041 + L1ME4a LINE L1 5931 6121 0 325 229 138 9 chr1 205120686 205120795 -37543558 + MIR3 SINE MIR 71 193 -15 818 262 107 51 chr1 205121181 205121593 -37542760 + MLT1J2 LTR MaLR 15 449 -1 2345 58 0 17 chr1 205121742 205122037 -37542316 + AluY SINE Alu 1 290 -21 4223 195 22 4 chr1 205122137 205123058 -37541295 - L1 LINE L1 -2741 3405 2469 702 309 60 40 chr1 205123059 205123409 -37540944 - L2 LINE L2 0 3313 2957 2118 139 0 0 chr1 205123454 205123756 -37540597 + AluSx SINE Alu 1 302 -10 323 287 111 70 chr1 205123759 205124146 -37540207 - L2 LINE L2 -449 2865 2463 864 300 163 25 chr1 205124170 205124764 -37539589 - L2 LINE L2 -1273 2041 1366 2593 87 38 12 chr1 205124877 205125223 -37539130 - THE1A LTR MaLR 0 355 1 12702 86 8 6 chr1 205125223 205125301 -37539052 - THE1A-int LTR MaLR 0 1580 1504 2581 53 0 7 chr1 205125301 205125601 -37538752 - AluY SINE Alu -13 298 1 12702 86 8 6 chr1 205125601 205127098 -37537255 - THE1A-int LTR MaLR -76 1504 1 2419 81 61 35 chr1 205127098 205127247 -37537106 - THE1A LTR MaLR 0 355 211 2499 60 0 7 chr1 205127247 205127549 -37536804 + AluY SINE Alu 1 300 -11 2419 81 61 35 chr1 205127549 205127745 -37536608 - THE1A LTR MaLR -144 211 1 298 300 86 17 chr1 205128008 205128165 -37536188 + MIR SINE MIR 19 184 -63 312 258 52 88 chr1 205128197 205128397 -37535956 + MIR3 SINE MIR 1 212 -50 3540 139 0 2 chr1 205129042 205129540 -37534813 + LOR1a LTR ERV1 1 497 0 2726 3 0 0 chr1 205129981 205130271 -37534082 + AluYa5 SINE Alu 22 311 0 4305 151 42 14 chr1 205130847 205131589 -37532764 - L1MD1 LINE L1 -5 6237 5475 * 17738 39 1 8 chr1 205131581 205134413 -37529940 - L1PA4 LINE L1 -1 6154 3341 8007 253 83 92 chr1 205134437 205136149 -37528204 - L1MD1 LINE L1 -743 5403 3677 1734 174 3 16 chr1 205136149 205136459 -37527894 - AluJo SINE Alu -6 306 1 8007 253 83 92 chr1 205136459 205137888 -37526465 - L1MD1 LINE L1 -2469 3677 2237 1412 209 40 7 chr1 205137888 205138184 -37526169 - AluJo SINE Alu -6 306 1 8007 253 83 92 chr1 205138184 205140556 -37523797 - L1MD1 LINE L1 -3909 2237 11 2641 185 73 108 chr1 205140810 205141840 -37522513 - L1ME1 LINE L1 -20 6146 5158 529 257 37 81 chr1 205141833 205142077 -37522276 - L1MEc LINE L1 -5217 1179 949 * 2277 99 10 0 chr1 205142077 205142379 -37521974 + AluSp SINE Alu 3 307 -6 529 257 37 81 chr1 205142379 205142430 -37521923 - L1MEc LINE L1 -5447 949 897 1658 253 106 6 chr1 205142430 205142904 -37521449 - L1MEc LINE L1 -5831 565 45 685 273 196 37 chr1 205142978 205143562 -37520791 - L1ME3A LINE L1 -219 5951 5271 317 264 11 0 chr1 205143571 205143662 -37520691 - L1ME3A LINE L1 -927 5219 5128 7007 140 4 31 chr1 205143704 205144960 -37519393 + L1PA6 LINE L1 922 2143 -4003 7351 86 6 4 chr1 205144961 205145962 -37518391 + L1PA6 LINE L1 3332 4334 -1812 920 99 0 0 chr1 205145962 205146093 -37518260 + L1P LINE L1 4616 4746 -1400 8060 73 75 1 chr1 205146097 205147848 -37516505 + L1PA6 LINE L1 4334 6150 -4 398 301 90 67 chr1 205147908 205148254 -37516099 - L1ME3A LINE L1 -1097 5049 4696 1236 290 71 42 chr1 205148261 205148382 -37515971 - L1ME3A LINE L1 -1955 4191 4075 8279 21 0 0 chr1 205148382 205149368 -37514985 - L1PA2 LINE L1 0 6155 5170 1236 290 71 42 chr1 205149368 205150281 -37514072 - L1ME3A LINE L1 -2071 4075 3131 231 150 0 0 chr1 205150364 205150404 -37513949 - L1ME3A LINE L1 -3139 3007 2968 977 213 0 0 chr1 205150405 205150579 -37513774 - AluJ SINE Alu -5 307 134 216 0 0 0 chr1 205150579 205150603 -37513750 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2482 72 8 94 chr1 205150618 205150992 -37513361 - L1PA8 LINE L1 -3 6169 5828 3335 105 8 16 chr1 205150992 205151636 -37512717 + L1PA8A LINE L1 4829 5470 -661 789 174 0 23 chr1 205151636 205151768 -37512585 - AluJ SINE Alu -173 129 1 307 163 58 0 chr1 205151774 205151860 -37512493 - L1ME3A LINE L1 -3179 2967 2877 1600 234 35 0 chr1 205151865 205152267 -37512086 - MER63B DNA MER1_type -5 431 16 231 237 34 17 chr1 205152725 205152784 -37511569 - MIR SINE MIR -50 212 153 313 363 7 0 chr1 205153592 205153738 -37510615 + L2 LINE L2 2211 2357 -957 309 357 107 34 chr1 205154305 205154568 -37509785 - L1MC/D LINE L1 -2040 5768 5487 203 195 24 0 chr1 205154582 205154623 -37509730 + CT-rich Low_complexity Low_complexity 2 43 0 1431 247 31 23 chr1 205154623 205155077 -37509276 - L1M4b LINE L1 -2075 4882 4422 2322 103 3 0 chr1 205155077 205155377 -37508976 - AluY SINE Alu -10 301 1 1431 247 31 23 chr1 205155377 205155404 -37508949 - L1M4b LINE L1 -2535 4422 4397 563 271 40 65 chr1 205155378 205155750 -37508603 - L1M4b LINE L1 -4436 2702 2340 * 478 15 0 45 chr1 205155739 205155806 -37508547 - L1P LINE L1 -2894 3252 3189 * 5360 48 4 1 chr1 205155809 205156925 -37507428 + L1P2 LINE L1 4686 5805 -349 5797 41 17 3 chr1 205156925 205157619 -37506734 + L1PA5 LINE L1 5434 6152 -2 634 193 19 1 chr1 205157622 205157776 -37506577 - L1MA8 LINE L1 -161 6028 5869 1096 106 24 0 chr1 205157936 205158106 -37506247 - L1MA5 LINE L1 -3 6297 6124 1360 192 117 29 chr1 205158106 205158204 -37506149 - L1M4b LINE L1 -5184 1675 1587 2460 64 3 0 chr1 205158204 205158500 -37505853 - AluY SINE Alu -14 297 1 1360 192 117 29 chr1 205158500 205158812 -37505541 - L1M4b LINE L1 -5272 1587 1229 252 316 52 19 chr1 205158909 205159064 -37505289 - L1M4b LINE L1 -5667 1188 1029 270 314 64 49 chr1 205159381 205159585 -37504768 - L1M4b LINE L1 -6620 239 33 235 132 38 0 chr1 205159616 205159669 -37504684 - L1ME LINE L1 -682 5439 5385 234 0 0 0 chr1 205160982 205161008 -37503345 + (TG)n Simple_repeat Simple_repeat 1 26 0 186 43 0 0 chr1 205161535 205161558 -37502795 + (A)n Simple_repeat Simple_repeat 1 23 0 252 0 0 0 chr1 205162384 205162412 -37501941 + (TTA)n Simple_repeat Simple_repeat 3 30 0 41385 48 1 2 chr1 205162455 205168594 -37495759 - L1PA4 LINE L1 -23 6132 1 267 242 65 0 chr1 205170673 205170735 -37493618 + MIR SINE MIR 84 149 -59 544 322 45 5 chr1 205170738 205170940 -37493413 + MIR SINE MIR 40 249 -13 3717 121 63 13 chr1 205171209 205171766 -37492587 + L1MA7 LINE L1 5588 6185 -106 365 58 19 0 chr1 205171766 205171818 -37492535 + (CA)n Simple_repeat Simple_repeat 1 53 0 3717 121 63 13 chr1 205171818 205171930 -37492423 + L1MA7 LINE L1 6185 6290 -1 260 273 125 74 chr1 205172248 205172424 -37491929 - MIR SINE MIR -15 247 63 238 321 7 29 chr1 205174003 205174140 -37490213 + MIR SINE MIR 73 206 -56 264 292 101 11 chr1 205174450 205174539 -37489814 - L2 LINE L2 -6 3266 3170 480 322 48 19 chr1 205174929 205175137 -37489216 + MIR SINE MIR 4 217 -45 486 276 38 82 chr1 205175167 205175486 -37488867 + MLT1J LTR MaLR 3 307 -204 684 249 79 52 chr1 205175673 205176002 -37488351 - MER46C DNA MER2_type 0 338 1 41060 48 2 6 chr1 205176158 205182303 -37482050 + L1PA5 LINE L1 1 6121 -33 581 51 0 0 chr1 205182293 205182372 -37481981 + L1PA5 LINE L1 6076 6154 0 * 252 273 23 0 chr1 205182399 205182487 -37481866 - L1MC4 LINE L1 -1339 6703 6614 237 255 0 43 chr1 205182433 205182527 -37481826 + L1MC4 LINE L1 6614 6703 -1339 * 234 226 0 0 chr1 205182487 205182540 -37481813 - L1MC4 LINE L1 -1339 6703 6651 * 375 322 32 38 chr1 205182590 205183124 -37481229 + L1ME3A LINE L1 778 1308 -4897 542 223 133 0 chr1 205183142 205183190 -37481163 + MER58C DNA MER1_type 28 68 -2352 284 0 28 0 chr1 205183190 205183226 -37481127 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 542 223 133 0 chr1 205183226 205183343 -37481010 + MER58C DNA MER1_type 68 215 0 247 309 80 96 chr1 205183417 205183718 -37480635 + LTR33 LTR ERVL 136 431 -90 557 220 53 63 chr1 205183834 205183985 -37480368 + L1ME3A LINE L1 1441 1592 -4804 2174 68 48 3 chr1 205183985 205184277 -37480076 + AluY SINE Alu 1 305 -6 557 220 53 63 chr1 205184277 205184443 -37479910 + L1ME3A LINE L1 1592 1755 -4641 642 230 88 33 chr1 205184703 205185105 -37479248 + L1ME3A LINE L1 2126 2516 -3699 538 240 55 95 chr1 205185110 205185510 -37478843 + L1ME3A LINE L1 3260 3643 -2572 1354 264 87 37 chr1 205185515 205186841 -37477512 + L1ME3A LINE L1 4802 6202 -37 275 246 142 44 chr1 205186842 205187159 -37477194 + L1ME4a LINE L1 5653 6000 -121 2644 141 41 14 chr1 205187999 205188509 -37475844 + L1MB3 LINE L1 5424 5947 -236 481 211 49 0 chr1 205188509 205188632 -37475721 + MLT1H LTR MaLR 421 549 0 1236 250 28 20 chr1 205188635 205188991 -37475362 + L1ME3 LINE L1 5798 6156 -6 513 224 221 20 chr1 205189042 205189324 -37475029 - L2 LINE L2 -163 3150 2750 1022 295 232 22 chr1 205189326 205189759 -37474594 - L2 LINE L2 -1337 1977 1636 2313 112 0 0 chr1 205189759 205190071 -37474282 - AluSx SINE Alu 0 312 1 1022 295 232 22 chr1 205190071 205190396 -37473957 - L2 LINE L2 -1678 1636 1060 239 292 42 0 chr1 205190400 205190472 -37473881 - L2 LINE L2 -1437 1877 1803 226 316 188 44 chr1 205190474 205190930 -37473423 + L2 LINE L2 2653 3171 -101 4758 49 8 3 chr1 205191145 205191740 -37472613 - L1PA7 LINE L1 -1 6153 5556 2372 162 74 34 chr1 205192580 205193135 -37471218 + L1MC2 LINE L1 5768 6344 0 212 255 20 0 chr1 205194155 205194206 -37470147 + L2 LINE L2 3212 3263 -50 414 313 75 7 chr1 205194296 205194443 -37469910 - L3 LINE CR1 -5 1572 1416 1787 183 92 58 chr1 205194912 205195359 -37468994 + MLT1C LTR MaLR 6 467 0 1677 226 5 19 chr1 205195971 205196469 -37467884 + L1MA5 LINE L1 1339 1826 -5023 1166 142 5 0 chr1 205196483 205196680 -37467673 + L1PB1 LINE L1 3 200 -6663 12153 149 53 20 chr1 205196682 205197236 -37467117 + L1PB1 LINE L1 636 1171 -5696 2063 92 0 15 chr1 205197236 205197507 -37466846 + AluSq SINE Alu 16 282 -31 207 0 0 0 chr1 205197509 205197532 -37466821 + (CA)n Simple_repeat Simple_repeat 2 24 0 12153 149 53 20 chr1 205197532 205203008 -37461345 + L1PB1 LINE L1 1171 6864 -3 2759 149 40 28 chr1 205203016 205203594 -37460759 + L1MA5 LINE L1 1792 2376 -4473 2502 203 25 10 chr1 205203603 205204418 -37459935 + L1MA5 LINE L1 2582 3408 -3440 3906 43 0 0 chr1 205204419 205204864 -37459489 + L1PA3 LINE L1 5708 6152 -3 944 163 26 9 chr1 205204869 205205096 -37459257 + L1MA5 LINE L1 3831 4061 -2787 * 3126 164 93 29 chr1 205205091 205205713 -37458640 + L1MA5 LINE L1 5408 6070 -932 2085 97 50 0 chr1 205205713 205205991 -37458362 + AluSg SINE Alu 1 292 -18 3126 164 93 29 chr1 205205991 205206196 -37458157 + L1MA5 LINE L1 6070 6260 -742 3836 136 75 14 chr1 205206359 205206546 -37457807 + L1MA5 LINE L1 6291 6465 -537 405 0 0 0 chr1 205206546 205206591 -37457762 + (CA)n Simple_repeat Simple_repeat 1 45 0 3836 136 75 14 chr1 205206591 205207072 -37457281 + L1MA5 LINE L1 6465 7000 -2 195 357 43 22 chr1 205208486 205208671 -37455682 + L2 LINE L2 1720 1908 -1406 1126 266 74 65 chr1 205208705 205209217 -37455136 + LTR67 LTR ERVL 3 519 -38 438 277 7 39 chr1 205209296 205209451 -37454902 + L2 LINE L2 2135 2284 -1030 29 28 0 0 chr1 205209848 205209884 -37454469 + AT_rich Low_complexity Low_complexity 1 36 0 218 350 81 83 chr1 205209945 205210150 -37454203 + L2 LINE L2 2778 3007 -265 196 250 69 69 chr1 205210437 205210553 -37453800 + L2 LINE L2 2997 3112 -160 * 810 292 49 43 chr1 205210544 205210935 -37453418 - L2 LINE L2 0 3313 2921 787 253 70 12 chr1 205211006 205211247 -37453106 - MIR SINE MIR -3 259 5 208 308 31 0 chr1 205213767 205213832 -37450521 + MIR SINE MIR 84 150 -112 279 276 29 19 chr1 205214430 205214535 -37449818 - MIR SINE MIR -21 241 136 2195 105 3 16 chr1 205214762 205215076 -37449277 - AluY SINE Alu -1 310 1 180 210 161 16 chr1 205215475 205215537 -37448816 - MIR3 SINE MIR -52 156 86 457 317 37 0 chr1 205215943 205216104 -37448249 - MIR3 SINE MIR -6 202 36 3016 170 10 0 chr1 205216161 205216667 -37447686 - L1MB3 LINE L1 -1 6182 5672 837 262 52 0 chr1 205216706 205216916 -37447437 - MIR SINE MIR -6 256 36 1080 265 97 42 chr1 205216965 205217492 -37446861 + L2 LINE L2 2740 3313 0 2413 63 0 20 chr1 205218711 205219012 -37445341 + AluY SINE Alu 1 295 -16 242 278 0 42 chr1 205219203 205219281 -37445072 + MIR SINE MIR 42 116 -92 1458 137 67 56 chr1 205219358 205219642 -37444711 + AluJo SINE Alu 11 297 -15 1671 175 53 56 chr1 205219845 205219975 -37444378 - MER58B DNA MER1_type -2079 341 212 2351 75 16 13 chr1 205219975 205220281 -37444072 + AluY SINE Alu 5 311 0 1671 175 53 56 chr1 205220281 205220492 -37443861 - MER58B DNA MER1_type -2208 212 1 3994 16 2 0 chr1 205221641 205222077 -37442276 - L1PA2 LINE L1 0 6155 5719 226 215 51 13 chr1 205222173 205222252 -37442101 - MIR SINE MIR -61 201 120 519 218 104 47 chr1 205222273 205222466 -37441887 - L2 LINE L2 -18 3295 3092 24 0 0 0 chr1 205223133 205223157 -37441196 + AT_rich Low_complexity Low_complexity 1 24 0 271 347 101 30 chr1 205223282 205223778 -37440575 + L2 LINE L2 480 1010 -2304 261 260 211 8 chr1 205223799 205223922 -37440431 - L2 LINE L2 -2 3311 3164 304 280 68 45 chr1 205224190 205224322 -37440031 - MER91C DNA MER1_type -1 139 5 186 133 0 0 chr1 205224357 205224387 -37439966 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 229 376 62 5 chr1 205224436 205224630 -37439723 + L2 LINE L2 1364 1568 -1746 197 292 42 10 chr1 205224861 205224957 -37439396 + L2 LINE L2 1990 2088 -1226 554 313 34 40 chr1 205224961 205225284 -37439069 + L2 LINE L2 2584 2904 -410 29598 69 4 4 chr1 205225322 205229978 -37434375 - L1PA6 LINE L1 -2 6152 1504 816 231 24 6 chr1 205230320 205230489 -37433864 + MLT1E LTR MaLR 283 454 -139 313 200 133 0 chr1 205230491 205230581 -37433772 + L1M4 LINE L1 2608 2709 -3437 1059 173 91 5 chr1 205230581 205230778 -37433575 - MER20 DNA MER1_type -5 214 1 1035 226 59 6 chr1 205230779 205231156 -37433197 + L1M4 LINE L1 3855 4338 -1808 905 128 0 27 chr1 205231788 205231936 -37432417 - AluJb SINE Alu -1 311 168 400 249 165 87 chr1 205231937 205232270 -37432083 - L2 LINE L2 -371 2943 2585 796 173 7 0 chr1 205232406 205232545 -37431808 + AluSg/x SINE Alu 170 309 0 205 250 0 0 chr1 205232551 205232591 -37431762 + L2 LINE L2 3230 3269 -3 252 269 0 30 chr1 205232951 205233018 -37431335 - L2 LINE L2 -4 3268 3204 305 282 88 53 chr1 205233091 205233353 -37431000 + L2 LINE L2 1286 1556 -1758 786 188 102 0 chr1 205233932 205234060 -37430293 + FRAM SINE Alu 18 158 -18 1819 122 8 0 chr1 205234060 205234314 -37430039 - AluSx SINE Alu -17 295 40 320 200 59 12 chr1 205234342 205234427 -37429926 - MIR SINE MIR -172 90 2 488 314 20 27 chr1 205234483 205234683 -37429670 + MIR SINE MIR 12 210 -52 26 50 0 0 chr1 205235814 205235854 -37428499 + AT_rich Low_complexity Low_complexity 1 40 0 2307 108 7 0 chr1 205235897 205236193 -37428160 + AluSq SINE Alu 1 298 -15 850 133 0 60 chr1 205237043 205237073 -37427280 + Charlie3 DNA MER1_type 2561 2591 -111 1930 147 10 7 chr1 205237073 205237372 -37426981 + AluSx SINE Alu 1 300 -12 850 133 0 60 chr1 205237372 205237492 -37426861 + Charlie3 DNA MER1_type 2591 2702 0 338 290 50 10 chr1 205237514 205237614 -37426739 - MER5A DNA MER1_type -77 112 9 287 287 0 11 chr1 205237691 205237778 -37426575 + MER5B DNA MER1_type 69 154 -24 654 191 86 117 chr1 205237782 205237933 -37426420 - MER112 DNA MER1_type -4 256 115 2247 112 3 0 chr1 205237933 205238228 -37426125 + AluSq SINE Alu 1 296 -17 654 191 86 117 chr1 205238228 205238333 -37426020 - MER112 DNA MER1_type -145 115 8 2156 105 20 0 chr1 205238421 205238727 -37425626 - AluSx SINE Alu 0 312 1 349 228 96 52 chr1 205238936 205239072 -37425281 - L1ME LINE L1 -348 5822 5681 359 285 33 20 chr1 205239088 205239239 -37425114 + MER20B DNA MER1_type 1 153 -630 332 337 56 5 chr1 205239375 205239571 -37424782 - L1ME LINE L1 -613 5551 5346 386 182 26 0 chr1 205239572 205239649 -37424704 - AluJ/FRAM SINE Alu -1 301 223 268 318 39 56 chr1 205239968 205240147 -37424206 - MIR SINE MIR -31 231 56 235 298 107 33 chr1 205240320 205240441 -37423912 - MIR SINE MIR -62 146 17 3131 166 12 63 chr1 205240498 205240665 -37423688 + MER68 LTR ERV1 1 175 -387 2223 79 4 0 chr1 205240665 205240974 -37423379 - AluY SINE Alu 0 310 1 3131 166 12 63 chr1 205240974 205241395 -37422958 + MER68 LTR ERV1 175 560 -2 2045 137 3 0 chr1 205241553 205241845 -37422508 + AluSx SINE Alu 1 293 -19 1840 90 7 47 chr1 205241863 205242174 -37422179 + AluSq SINE Alu 18 317 0 1000 201 11 0 chr1 205242287 205242466 -37421887 + MLT1A1 LTR MaLR 185 365 0 1775 164 0 35 chr1 205242475 205242785 -37421568 - AluJo SINE Alu -13 299 1 1415 226 9 3 chr1 205242880 205243208 -37421145 + L1M4 LINE L1 4810 5139 -1007 361 82 41 0 chr1 205243212 205243261 -37421092 + L1MC1 LINE L1 6274 6324 -9 2151 180 60 0 chr1 205243273 205243689 -37420664 - Charlie1b DNA MER1_type -52 471 31 767 209 52 23 chr1 205243689 205243861 -37420492 + MER63A DNA MER1_type 1 177 -33 262 159 0 0 chr1 205245310 205245354 -37418999 - MIR SINE MIR -127 135 92 1424 176 79 56 chr1 205246580 205246650 -37417703 + MER7A DNA MER2_type 1 68 -2970 1883 144 7 3 chr1 205246650 205246941 -37417412 + AluSx SINE Alu 1 292 -20 1424 176 79 56 chr1 205246941 205247210 -37417143 + MER7A DNA MER2_type 68 346 0 228 35 0 0 chr1 205250160 205250189 -37414164 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr1 205254529 205254549 -37409804 + (T)n Simple_repeat Simple_repeat 1 20 0 2064 153 0 0 chr1 205254624 205254919 -37409434 + AluSx SINE Alu 1 295 -17 276 53 0 0 chr1 205254936 205254974 -37409379 + (A)n Simple_repeat Simple_repeat 1 38 0 876 90 0 0 chr1 205258426 205258537 -37405816 - AluY SINE Alu -200 111 1 377 213 0 0 chr1 205258541 205258621 -37405732 - Charlie1 DNA MER1_type -33 2728 2649 360 133 67 0 chr1 205258621 205258681 -37405672 + AluJ/FRAM SINE Alu 226 289 -13 1352 192 64 15 chr1 205259636 205259902 -37404451 + AluJb SINE Alu 1 279 -33 270 227 47 33 chr1 205260023 205260173 -37404180 + (GTGTG)n Simple_repeat Simple_repeat 2 153 0 185 266 0 76 chr1 205261972 205262051 -37402302 + L2 LINE L2 3199 3271 -1 26 0 0 0 chr1 205262813 205262839 -37401514 + AT_rich Low_complexity Low_complexity 1 26 0 204 125 0 0 chr1 205263001 205263033 -37401320 + (CA)n Simple_repeat Simple_repeat 2 33 0 2363 85 0 3 chr1 205264793 205265088 -37399265 + AluSq SINE Alu 3 296 -17 478 308 93 34 chr1 205265225 205265462 -37398891 - MIR SINE MIR -6 256 6 238 286 112 10 chr1 205267174 205267272 -37397081 + MIR SINE MIR 20 127 -81 243 189 242 21 chr1 205267491 205267586 -37396767 - L2 LINE L2 0 3313 3198 205 331 15 23 chr1 205267805 205267935 -37396418 + MIR SINE MIR 64 192 -70 207 180 40 0 chr1 205268707 205268757 -37395596 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 322 358 19 25 chr1 205268869 205269031 -37395322 - L3 LINE CR1 0 1577 1417 2553 56 0 3 chr1 205269442 205269744 -37394609 - AluY SINE Alu -10 301 1 270 362 50 50 chr1 205269855 205269996 -37394357 + L2 LINE L2 3122 3262 -10 389 313 37 125 chr1 205270062 205270439 -37393914 + L2 LINE L2 2928 3271 -1 25 75 0 0 chr1 205270849 205270902 -37393451 + AT_rich Low_complexity Low_complexity 1 53 0 414 297 79 24 chr1 205271025 205271190 -37393163 + MIR SINE MIR 28 201 -61 255 324 51 9 chr1 205271324 205271540 -37392813 - L1M4 LINE L1 -2607 3539 3315 420 313 0 0 chr1 205273152 205273264 -37391089 - MIR SINE MIR -1 261 150 326 172 16 0 chr1 205273348 205273412 -37390941 + AluJo SINE Alu 67 131 -171 995 206 0 0 chr1 205273660 205273820 -37390533 + AluJo SINE Alu 130 292 -20 2513 62 7 0 chr1 205273820 205274128 -37390225 + AluY SINE Alu 1 310 -1 324 242 116 0 chr1 205274659 205274754 -37389599 - MIR SINE MIR -105 157 52 180 319 56 62 chr1 205275151 205275295 -37389058 - L2 LINE L2 -213 3059 2917 194 342 105 77 chr1 205275321 205275586 -37388767 - L2 LINE L2 -529 2785 2529 306 0 0 0 chr1 205275586 205275620 -37388733 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2196 93 0 0 chr1 205275623 205275903 -37388450 - AluSg SINE Alu -30 280 1 194 342 105 77 chr1 205275903 205276098 -37388255 - L2 LINE L2 -786 2528 2308 253 79 0 0 chr1 205276424 205276462 -37387891 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 279 362 39 8 chr1 205276499 205276626 -37387727 - L2 LINE L2 -1294 2020 1890 1139 191 4 44 chr1 205276640 205276865 -37387488 - AluJo SINE Alu -91 221 6 1627 117 110 13 chr1 205277125 205277212 -37387141 - MER44D DNA MER2_type -1883 608 531 1475 112 63 5 chr1 205277212 205277435 -37386918 - MER46A DNA MER2_type 0 236 1 1627 117 110 13 chr1 205277435 205277655 -37386698 - MER44D DNA MER2_type -1960 531 1 327 216 39 0 chr1 205277806 205277937 -37386416 + (CGG)n Simple_repeat Simple_repeat 1 136 0 387 250 18 67 chr1 205278261 205278425 -37385928 - MIR SINE MIR -70 192 37 186 43 0 0 chr1 205278426 205278449 -37385904 + (TC)n Simple_repeat Simple_repeat 2 24 0 2029 93 48 3 chr1 205278456 205278745 -37385608 - AluSc SINE Alu -7 302 1 302 270 9 70 chr1 205278828 205278943 -37385410 + MIR SINE MIR 53 160 -102 187 333 37 25 chr1 205279221 205279302 -37385051 + MIR SINE MIR 157 238 -24 1677 157 0 53 chr1 205279362 205279662 -37384691 - AluJo SINE Alu -24 288 5 467 265 224 41 chr1 205280141 205280165 -37384188 - MIR SINE MIR 0 262 244 2172 141 0 0 chr1 205280165 205280464 -37383889 - AluSx SINE Alu -13 299 1 467 265 224 41 chr1 205280464 205280658 -37383695 - MIR SINE MIR -18 244 4 648 251 120 22 chr1 205282388 205282610 -37381743 - L1ME1 LINE L1 -2 6176 5895 2109 120 10 3 chr1 205282610 205282910 -37381443 + AluSq SINE Alu 1 302 -11 648 251 120 22 chr1 205282910 205283017 -37381336 - L1ME1 LINE L1 -283 5895 5800 289 174 47 12 chr1 205283014 205283100 -37381253 + L1M4 LINE L1 4962 5050 -1096 * 1979 195 57 43 chr1 205283140 205283791 -37380562 - L1ME1 LINE L1 -374 5792 5132 41 21 0 0 chr1 205284599 205284647 -37379706 + AT_rich Low_complexity Low_complexity 1 48 0 2091 88 13 46 chr1 205284970 205285275 -37379078 - AluSx SINE Alu -17 295 1 1491 215 60 25 chr1 205285534 205285887 -37378466 + MLT1A1 LTR MaLR 1 365 0 1645 135 40 69 chr1 205286100 205286404 -37377949 - AluSx SINE Alu -17 295 1 751 109 0 0 chr1 205286404 205286505 -37377848 - AluSq/x SINE Alu -177 135 35 3516 128 0 28 chr1 205286567 205286986 -37377367 + MER1A DNA MER1_type 3 405 -2295 2007 143 7 7 chr1 205286986 205287286 -37377067 + AluSx SINE Alu 1 300 -12 3516 128 0 28 chr1 205287286 205287406 -37376947 + MER1A DNA MER1_type 405 527 0 364 290 50 10 chr1 205287428 205287528 -37376825 - MER5A DNA MER1_type -77 112 9 292 295 2 13 chr1 205287589 205287693 -37376660 + MER5B DNA MER1_type 63 154 -24 555 191 86 117 chr1 205287697 205287848 -37376505 - MER112 DNA MER1_type -4 256 115 2253 112 3 0 chr1 205287848 205288143 -37376210 + AluSq SINE Alu 1 296 -17 555 191 86 117 chr1 205288143 205288248 -37376105 - MER112 DNA MER1_type -145 115 8 314 0 69 35 chr1 205288319 205288377 -37375976 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 2256 79 0 0 chr1 205288378 205288657 -37375696 - AluY SINE Alu -32 279 1 377 213 0 0 chr1 205288661 205288741 -37375612 - Charlie1 DNA MER1_type -33 2728 2649 360 133 67 0 chr1 205288741 205288801 -37375552 + AluJ/FRAM SINE Alu 226 289 -13 1608 189 50 14 chr1 205289757 205290054 -37374299 + AluJb SINE Alu 1 308 -4 1611 251 76 16 chr1 205290133 205290620 -37373733 + MLT1E LTR MaLR 78 593 0 978 168 10 34 chr1 205290622 205290830 -37373523 - Charlie1 DNA MER1_type -310 2451 2249 4595 193 38 31 chr1 205290835 205292251 -37372102 + L1M3 LINE L1 4172 5601 -579 2359 86 3 7 chr1 205292251 205292552 -37371801 + AluSx SINE Alu 1 300 -12 2141 123 0 3 chr1 205292598 205292898 -37371455 - AluSx SINE Alu -13 299 1 1706 168 7 26 chr1 205292898 205293201 -37371152 - AluJo SINE Alu -15 297 1 196 321 19 0 chr1 205293363 205293416 -37370937 - MIR SINE MIR -62 146 93 1335 170 109 31 chr1 205293697 205293770 -37370583 - MER69B DNA AcHobo -1311 1215 1149 2548 50 0 3 chr1 205293770 205294070 -37370283 - AluY SINE Alu -12 299 1 1335 170 109 31 chr1 205294070 205294419 -37369934 - MER69B DNA AcHobo -1377 1149 760 678 196 11 62 chr1 205294457 205294516 -37369837 - MER69B DNA AcHobo -1935 591 531 2281 125 0 0 chr1 205294516 205294827 -37369526 - AluSx SINE Alu -1 311 1 678 196 11 62 chr1 205294827 205294946 -37369407 - MER69B DNA AcHobo -1995 531 422 495 116 179 0 chr1 205294940 205295035 -37369318 - MER69B DNA AcHobo -1102 124 13 * 1816 149 0 27 chr1 205295913 205296208 -37368145 - AluJo SINE Alu -25 287 1 1509 201 7 7 chr1 205296325 205296598 -37367755 + AluJo SINE Alu 6 278 -34 186 143 0 0 chr1 205296598 205296633 -37367720 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1640 176 41 3 chr1 205296817 205296989 -37367364 - AluSx SINE Alu -11 301 112 390 21 0 0 chr1 205296989 205297036 -37367317 + (TG)n Simple_repeat Simple_repeat 2 48 0 1640 176 41 3 chr1 205297036 205297153 -37367200 - AluSx SINE Alu -200 112 1 418 145 0 0 chr1 205297201 205297277 -37367076 - L1PA16 LINE L1 0 6166 6091 2297 121 0 0 chr1 205297470 205297777 -37366576 + AluSq SINE Alu 1 307 -6 1974 142 3 3 chr1 205297786 205298096 -37366257 + AluSx SINE Alu 1 310 -2 444 292 19 7 chr1 205299638 205299792 -37364561 + LTR37B LTR ERV1 16 171 -297 678 206 28 42 chr1 205299859 205300073 -37364280 + LTR37B LTR ERV1 199 409 -59 2067 120 0 3 chr1 205300136 205300420 -37363933 + AluSg SINE Alu 9 291 -19 324 0 0 0 chr1 205300746 205300782 -37363571 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2135 129 3 16 chr1 205300837 205301148 -37363205 - AluSx SINE Alu -5 307 1 1289 204 17 4 chr1 205301510 205301745 -37362608 + MER8 DNA MER2_type 1 238 -1 472 357 68 26 chr1 205302427 205302808 -37361545 + L2 LINE L2 2689 3104 -168 1197 103 0 0 chr1 205302954 205303110 -37361243 - AluSq SINE Alu -15 298 143 21 36 0 0 chr1 205303270 205303298 -37361055 + AT_rich Low_complexity Low_complexity 1 28 0 2232 122 0 0 chr1 205303298 205303593 -37360760 + AluSx SINE Alu 1 295 -17 1443 199 72 4 chr1 205303593 205303869 -37360484 - AluJo SINE Alu -17 295 1 1994 130 41 3 chr1 205304220 205304512 -37359841 + AluJb SINE Alu 1 303 -9 1263 216 42 58 chr1 205304803 205305005 -37359348 - MLT1A2 LTR MaLR -16 358 163 2175 132 0 0 chr1 205305005 205305301 -37359052 - AluSx SINE Alu -16 296 1 1263 216 42 58 chr1 205305301 205305459 -37358894 - MLT1A2 LTR MaLR -211 163 4 1139 264 90 41 chr1 205305616 205306150 -37358203 - L1MC4a LINE L1 -1942 5866 5307 14800 135 36 27 chr1 205306265 205306403 -37357950 - Tigger4(Zombi) DNA MER2_type 0 2731 2596 1713 189 0 10 chr1 205306403 205306700 -37357653 + AluJo SINE Alu 1 294 -18 14800 135 36 27 chr1 205306700 205306772 -37357581 - Tigger4(Zombi) DNA MER2_type -135 2596 2526 2063 124 21 3 chr1 205306772 205307063 -37357290 - AluSg SINE Alu -14 296 1 2114 132 0 0 chr1 205307068 205307356 -37356997 - AluSx SINE Alu -24 288 1 14800 135 36 27 chr1 205307356 205307978 -37356375 - Tigger4(Zombi) DNA MER2_type -208 2523 1908 2385 120 36 57 chr1 205307978 205308344 -37356009 + MSTB1 LTR MaLR 1 358 -74 1982 151 3 3 chr1 205308344 205308642 -37355711 - AluJo SINE Alu -14 298 1 2385 120 36 57 chr1 205308642 205308716 -37355637 + MSTB1 LTR MaLR 358 432 0 14800 135 36 27 chr1 205308716 205310577 -37353776 - Tigger4(Zombi) DNA MER2_type -823 1908 5 444 291 17 17 chr1 205310700 205310872 -37353481 - L1ME LINE L1 -377 5785 5614 313 271 53 24 chr1 205310992 205311167 -37353186 - L1ME LINE L1 -1089 5057 4879 530 295 90 50 chr1 205311332 205311710 -37352643 - L1ME LINE L1 -1468 4678 4274 1681 174 11 39 chr1 205311710 205311994 -37352359 - L1MC1 LINE L1 0 6333 6059 3063 95 29 26 chr1 205311994 205312446 -37351907 - MLT2A2 LTR ERVL 0 453 1 1681 174 11 39 chr1 205312446 205312517 -37351836 - L1MC1 LINE L1 -274 6059 5988 530 295 90 50 chr1 205312517 205312639 -37351714 - L1ME LINE L1 -1872 4274 4158 267 127 0 0 chr1 205312643 205312698 -37351655 - L1MA4 LINE L1 -5 6295 6241 456 172 11 0 chr1 205312744 205312837 -37351516 - L1MA5 LINE L1 -43 6257 6164 21 0 0 0 chr1 205313955 205313976 -37350377 + GC_rich Low_complexity Low_complexity 1 21 0 424 360 34 34 chr1 205314412 205314704 -37349649 + L2 LINE L2 2813 3104 -168 1197 103 0 0 chr1 205314850 205315006 -37349347 - AluSq SINE Alu -15 298 143 21 36 0 0 chr1 205315166 205315194 -37349159 + AT_rich Low_complexity Low_complexity 1 28 0 2232 122 0 0 chr1 205315194 205315489 -37348864 + AluSx SINE Alu 1 295 -17 1443 199 72 4 chr1 205315489 205315765 -37348588 - AluJo SINE Alu -17 295 1 1969 134 41 3 chr1 205316116 205316408 -37347945 + AluJb SINE Alu 1 303 -9 1267 221 39 58 chr1 205316699 205316901 -37347452 - MLT1A2 LTR MaLR -16 358 165 2175 132 0 0 chr1 205316901 205317197 -37347156 - AluSx SINE Alu -16 296 1 1267 221 39 58 chr1 205317197 205317356 -37346997 - MLT1A2 LTR MaLR -209 165 4 1118 266 90 41 chr1 205317513 205318047 -37346306 - L1MC4a LINE L1 -1942 5866 5307 920 143 0 95 chr1 205318162 205318300 -37346053 - Tigger4(Zombi) DNA MER2_type 0 2731 2618 1727 185 0 10 chr1 205318300 205318597 -37345756 + AluJo SINE Alu 1 294 -18 920 143 0 95 chr1 205318597 205318668 -37345685 - Tigger4(Zombi) DNA MER2_type -113 2618 2542 2028 123 20 7 chr1 205318669 205318961 -37345392 - AluSg SINE Alu -14 296 1 2005 113 11 7 chr1 205318966 205319248 -37345105 - AluSx SINE Alu -24 288 6 290 106 53 0 chr1 205319302 205319368 -37344985 - L1MD3 LINE L1 -1 7985 7716 23 78 0 0 chr1 205319436 205319487 -37344866 + AT_rich Low_complexity Low_complexity 1 51 0 2168 117 27 0 chr1 205319662 205319960 -37344393 + AluSx SINE Alu 1 306 -6 1305 175 109 31 chr1 205320057 205320406 -37343947 + MER69B DNA AcHobo 760 1149 -1377 2315 53 13 17 chr1 205320406 205320706 -37343647 + AluY SINE Alu 1 299 -12 1305 175 109 31 chr1 205320706 205320779 -37343574 + MER69B DNA AcHobo 1149 1215 -11 196 321 19 0 chr1 205321060 205321113 -37343240 + MIR SINE MIR 93 146 -62 1674 168 7 30 chr1 205321273 205321577 -37342776 + AluJo SINE Alu 1 297 -15 2098 124 3 3 chr1 205321577 205321876 -37342477 + AluSx SINE Alu 1 299 -13 804 239 94 17 chr1 205322536 205322770 -37341583 - MIR SINE MIR 0 262 11 195 42 0 0 chr1 205322815 205322839 -37341514 + (ATG)n Simple_repeat Simple_repeat 3 26 0 699 273 49 5 chr1 205322841 205323046 -37341307 - MIR SINE MIR -1 261 48 26 0 0 0 chr1 205323191 205323217 -37341136 + AT_rich Low_complexity Low_complexity 1 26 0 213 17 35 69 chr1 205324000 205324058 -37340295 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 84 0 0 0 chr1 205324058 205324142 -37340211 + AT_rich Low_complexity Low_complexity 1 84 0 216 61 20 41 chr1 205324142 205324191 -37340162 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 1953 145 7 10 chr1 205324390 205324687 -37339666 - AluJb SINE Alu -16 296 1 1710 120 24 0 chr1 205324759 205325009 -37339344 - AluSq SINE Alu -53 260 5 267 319 7 7 chr1 205325091 205325229 -37339124 + L1MEd LINE L1 452 589 -5941 617 273 45 41 chr1 205325418 205325638 -37338715 + L1MEd LINE L1 850 1070 -5460 316 290 36 29 chr1 205325641 205325779 -37338574 + L1MEd LINE L1 1962 2100 -4440 2306 92 7 0 chr1 205326006 205326309 -37338044 + AluY SINE Alu 1 305 -6 520 231 114 12 chr1 205326520 205326775 -37337578 + L1MEd LINE L1 2609 2889 -3651 623 304 98 26 chr1 205326995 205327307 -37337046 + MLT1H1 LTR MaLR 16 392 -203 434 288 132 14 chr1 205327308 205327527 -37336826 + L1M4 LINE L1 4015 4259 -1887 320 276 52 69 chr1 205327529 205327703 -37336650 + L1M4 LINE L1 4652 4822 -1324 1640 159 22 25 chr1 205327789 205328066 -37336287 + AluJo SINE Alu 1 276 -36 291 28 0 0 chr1 205328074 205328110 -37336243 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2046 88 29 0 chr1 205328232 205328355 -37335998 + AluY SINE Alu 1 119 -212 242 29 29 0 chr1 205328355 205328390 -37335963 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 2046 88 29 0 chr1 205328390 205328589 -37335764 + AluY SINE Alu 119 331 0 314 178 66 132 chr1 205328634 205328786 -37335567 + L1M4 LINE L1 5189 5330 -816 403 208 13 0 chr1 205328801 205328878 -37335475 + FRAM/FAM SINE Alu 1 77 -99 368 268 144 84 chr1 205328988 205329441 -37334912 + L1M2 LINE L1 681 1158 -5691 4854 133 27 15 chr1 205329472 205330383 -37333970 - L1MA4 LINE L1 -121 6179 5258 1768 116 127 0 chr1 205330383 205330650 -37333703 - AluSq SINE Alu -12 301 1 4017 170 34 47 chr1 205330651 205330742 -37333611 - L1MA4 LINE L1 -1156 4990 4899 1697 191 7 3 chr1 205330742 205331035 -37333318 - AluJo SINE Alu -18 294 1 4017 170 34 47 chr1 205331035 205331904 -37332449 - L1MA4 LINE L1 -1247 4899 4042 1329 203 59 37 chr1 205331904 205332302 -37332051 - L1MC4 LINE L1 -28 7967 7474 1277 190 48 45 chr1 205332303 205332385 -37331968 + MLT1A1 LTR MaLR 1 81 -284 2020 93 68 0 chr1 205332385 205332664 -37331689 - AluSx SINE Alu -14 298 1 1277 190 48 45 chr1 205332664 205332934 -37331419 + MLT1A1 LTR MaLR 81 354 -11 796 209 6 17 chr1 205332942 205333114 -37331239 - L1MC4 LINE L1 -566 7476 7307 1099 255 61 45 chr1 205333118 205333542 -37330811 - L1MC4a LINE L1 -1033 6775 6345 5096 226 85 44 chr1 205333574 205333710 -37330643 - L1MB7 LINE L1 -16 6168 6039 1894 169 13 0 chr1 205333710 205334018 -37330335 + AluJb SINE Alu 1 312 0 5096 226 85 44 chr1 205334018 205335630 -37328723 - L1MB7 LINE L1 -145 6039 4494 2000 159 7 0 chr1 205335630 205335932 -37328421 - AluSx SINE Alu -8 304 1 5096 226 85 44 chr1 205335932 205336419 -37327934 - L1MB7 LINE L1 -1690 4494 4028 2085 148 0 7 chr1 205336419 205336722 -37327631 - AluSx SINE Alu -9 303 3 5096 226 85 44 chr1 205336722 205337339 -37327014 - L1MB7 LINE L1 -2156 4028 3197 39388 48 3 0 chr1 205337343 205342468 -37321885 + L1P LINE L1 22 5160 -986 25153 41 0 11 chr1 205342568 205346484 -37317869 + L1PA5 LINE L1 2238 6148 -6 4629 140 25 7 chr1 205346486 205347950 -37316403 + L1MA3 LINE L1 4438 5932 -373 2921 78 31 3 chr1 205347950 205348582 -37315771 - HERVK11 LTR ERVK -5205 2748 1165 3974 150 38 72 chr1 205348582 205349463 -37314890 - HERVK11 LTR ERVK -7102 851 1 4735 34 7 2 chr1 205349463 205350056 -37314297 - MER11C LTR ERVK 0 1071 476 3192 108 45 46 chr1 205350057 205350465 -37313888 + L1MA3 LINE L1 5716 6124 -181 2189 135 0 0 chr1 205350465 205350777 -37313576 + AluSx SINE Alu 1 312 0 3192 108 45 46 chr1 205350777 205350951 -37313402 + L1MA3 LINE L1 6124 6297 -8 481 250 38 12 chr1 205350974 205351134 -37313219 + L1ME3A LINE L1 5727 5890 -280 29 0 0 0 chr1 205351504 205351533 -37312820 + AT_rich Low_complexity Low_complexity 1 29 0 1885 180 0 0 chr1 205352171 205352477 -37311876 + AluJb SINE Alu 2 307 -5 22 35 0 0 chr1 205352641 205352670 -37311683 + AT_rich Low_complexity Low_complexity 1 29 0 2196 131 6 6 chr1 205352685 205352997 -37311356 + AluSx SINE Alu 1 312 0 364 251 138 24 chr1 205353110 205353451 -37310902 - L1ME LINE L1 -5006 2116 1737 345 268 99 17 chr1 205353464 205353676 -37310677 - L1ME LINE L1 -4944 1640 1368 1124 258 148 56 chr1 205353901 205354217 -37310136 + HAL1 LINE L1 1677 1962 -545 564 143 0 0 chr1 205354219 205354544 -37309809 + AluYa8 SINE Alu 3 327 0 * 1124 258 148 56 chr1 205354508 205354739 -37309614 + HAL1 LINE L1 1962 2170 -337 2452 66 23 0 chr1 205354739 205355043 -37309310 + AluY SINE Alu 1 311 0 1124 258 148 56 chr1 205355043 205355187 -37309166 + HAL1 LINE L1 2170 2397 -110 747 266 14 5 chr1 205355211 205355418 -37308935 + HAL1 LINE L1 1601 1809 -698 275 257 71 71 chr1 205356184 205356324 -37308029 + LTR67 LTR ERVL 1 140 -417 246 180 0 40 chr1 205356670 205356720 -37307633 + L2 LINE L2 3265 3312 -1 1067 157 84 0 chr1 205357241 205357432 -37306921 - MER20 DNA MER1_type -10 209 3 483 323 97 5 chr1 205357450 205357645 -37306708 - L2 LINE L2 -727 2587 2375 2152 111 0 14 chr1 205357686 205357983 -37306370 - AluSx SINE Alu -19 293 1 227 254 95 0 chr1 205358108 205358171 -37306182 - L2 LINE L2 -1071 2243 2175 445 252 50 44 chr1 205358181 205358340 -37306013 + HAL1 LINE L1 2239 2398 -109 23 78 0 0 chr1 205358368 205358419 -37305934 + AT_rich Low_complexity Low_complexity 1 51 0 818 275 0 0 chr1 205358796 205358978 -37305375 - FRAM SINE Alu 0 176 1 554 281 29 58 chr1 205359308 205359586 -37304767 + HAL1 LINE L1 2231 2500 -7 3174 221 120 60 chr1 205359769 205360922 -37303431 - L1ME1 LINE L1 -5 6161 5079 2555 68 0 0 chr1 205360922 205361231 -37303122 + AluY SINE Alu 1 309 -2 3174 221 120 60 chr1 205361231 205362573 -37301780 - L1ME1 LINE L1 -1087 5079 3510 285 331 73 0 chr1 205362660 205362838 -37301515 - L1ME1 LINE L1 -2647 3499 3309 447 89 0 0 chr1 205362892 205362948 -37301405 - U6 snRNA snRNA -51 56 1 22 0 0 0 chr1 205363430 205363452 -37300901 + AT_rich Low_complexity Low_complexity 1 22 0 1503 182 51 0 chr1 205363452 205363727 -37300626 + AluSx SINE Alu 1 289 -23 1954 152 101 8 chr1 205363731 205364062 -37300291 - L1PB4 LINE L1 -7 6149 5779 258 32 0 0 chr1 205364062 205364093 -37300260 + (CA)n Simple_repeat Simple_repeat 1 31 0 1954 152 101 8 chr1 205364093 205364129 -37300224 - L1PB4 LINE L1 -377 5779 5748 2030 96 92 0 chr1 205364220 205364502 -37299851 + AluJo SINE Alu 5 312 0 191 343 27 0 chr1 205364595 205364668 -37299685 - MIR3 SINE MIR -48 160 86 494 262 173 18 chr1 205365187 205365355 -37298998 + MIR SINE MIR 49 242 -20 186 43 0 0 chr1 205366090 205366113 -37298240 + (GGGGA)n Simple_repeat Simple_repeat 2 24 0 375 285 126 18 chr1 205366789 205367111 -37297242 - L1 LINE L1 -2191 3955 3592 2333 67 0 20 chr1 205367288 205367585 -37296768 + AluY SINE Alu 1 291 -20 313 247 135 24 chr1 205367687 205367857 -37296496 - L1ME1 LINE L1 -2920 3226 3038 1062 256 110 9 chr1 205368119 205368548 -37295805 - L1ME3A LINE L1 -211 5959 5488 229 257 29 14 chr1 205368591 205368661 -37295692 - L1ME LINE L1 -447 5723 5653 1068 219 18 0 chr1 205369004 205369223 -37295130 + MIR SINE MIR 2 224 -38 205 321 95 0 chr1 205369233 205369317 -37295036 + MIR SINE MIR 110 201 -61 344 276 160 33 chr1 205369431 205369777 -37294576 + L2 LINE L2 2627 3021 -292 553 227 186 14 chr1 205369785 205370005 -37294348 - LTR67 LTR ERVL -4 553 296 2462 73 3 0 chr1 205370041 205370341 -37294012 - AluSg SINE Alu -9 301 1 284 285 73 29 chr1 205370528 205370665 -37293688 + L2 LINE L2 3026 3168 -145 3493 159 59 62 chr1 205371343 205372035 -37292318 + LTR8 LTR ERV1 1 690 -1 1852 151 7 10 chr1 205372170 205372461 -37291892 + AluJb SINE Alu 1 290 -22 475 328 130 42 chr1 205372531 205373123 -37291230 - L2 LINE L2 -450 2864 2221 187 280 40 0 chr1 205373220 205373295 -37291058 + L2 LINE L2 2029 2106 -1208 211 304 13 25 chr1 205373338 205373417 -37290936 + L2 LINE L2 2222 2299 -1015 2216 111 10 0 chr1 205374739 205375028 -37289325 + AluSq SINE Alu 1 292 -21 204 182 0 0 chr1 205375238 205375282 -37289071 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 384 179 0 13 chr1 205375284 205375362 -37288991 + MER116 DNA Mariner 4 80 0 23 0 0 0 chr1 205375835 205375858 -37288495 + AT_rich Low_complexity Low_complexity 1 23 0 1815 92 36 0 chr1 205378028 205378279 -37286074 + Tigger5 DNA MER2_type 2064 2323 0 240 211 14 28 chr1 205378282 205378353 -37286000 + (TA)n Simple_repeat Simple_repeat 2 71 0 288 0 0 0 chr1 205378358 205378390 -37285963 + (TG)n Simple_repeat Simple_repeat 2 33 0 1012 223 3 85 chr1 205378736 205378914 -37285439 + L1MC4 LINE L1 7735 7815 -180 249 108 0 0 chr1 205378914 205378951 -37285402 + (CA)n Simple_repeat Simple_repeat 1 37 0 1012 223 3 85 chr1 205378951 205379110 -37285243 + L1MC4 LINE L1 7815 7985 -10 669 186 9 0 chr1 205379653 205379766 -37284587 + FLAM_A SINE Alu 18 131 -11 474 231 60 8 chr1 205379863 205379997 -37284356 - MIR SINE MIR -55 207 67 239 316 61 36 chr1 205380065 205380261 -37284092 + L2 LINE L2 2460 2660 -654 456 226 57 57 chr1 205380267 205380391 -37283962 + L2 LINE L2 3189 3312 -1 264 328 192 11 chr1 205380400 205380577 -37283776 + L2 LINE L2 2633 2841 -473 443 226 119 13 chr1 205380796 205380955 -37283398 + L2 LINE L2 3135 3310 -3 635 250 156 19 chr1 205381274 205381486 -37282867 - MIR SINE MIR -16 246 6 1382 182 25 8 chr1 205381527 205381797 -37282556 + AluJb SINE Alu 37 310 0 337 332 153 42 chr1 205382050 205382384 -37281969 + L2 LINE L2 2897 3267 -5 182 260 83 42 chr1 205382677 205382773 -37281580 - MIR SINE MIR -6 256 157 411 306 81 17 chr1 205382979 205383152 -37281201 + MIR3 SINE MIR 22 205 -3 2189 122 10 0 chr1 205383571 205383874 -37280479 - AluSx SINE Alu -6 306 1 2235 99 0 3 chr1 205384053 205384364 -37279989 - AluSg SINE Alu 0 310 1 1499 128 5 5 chr1 205384836 205385055 -37279298 - AluJb SINE Alu -9 303 85 469 257 174 78 chr1 205385375 205385956 -37278397 - L1MC/D LINE L1 -749 5397 5191 225 366 16 8 chr1 205386383 205386506 -37277847 - L2 LINE L2 -173 3099 2976 550 253 79 57 chr1 205386595 205386860 -37277493 + LTR33A LTR ERVL 1 271 -252 1915 119 0 52 chr1 205387253 205387387 -37276966 + AluJb SINE Alu 6 145 -167 2090 106 29 0 chr1 205387387 205387682 -37276671 + AluSp SINE Alu 1 303 0 1915 119 0 52 chr1 205387682 205387856 -37276497 + AluJb SINE Alu 145 299 -13 809 176 0 0 chr1 205389015 205389151 -37275202 + FRAM SINE Alu 1 135 -41 213 258 0 32 chr1 205389158 205389220 -37275133 - MIR SINE MIR -94 168 109 595 262 7 7 chr1 205389300 205389441 -37274912 + MIR SINE MIR 2 142 -120 5380 93 43 30 chr1 205389444 205390250 -37274103 + L1MA3 LINE L1 5489 6305 0 232 221 29 15 chr1 205390300 205390368 -37273985 + MIR SINE MIR 136 204 -58 1098 179 5 21 chr1 205390379 205390569 -37273784 + MER58A DNA MER1_type 37 223 -1 3599 96 103 49 chr1 205391624 205392198 -37272155 - LTR14B LTR ERVK 0 608 4 216 289 26 13 chr1 205392825 205392901 -37271452 - L2 LINE L2 0 3272 3196 * 713 334 141 25 chr1 205392900 205393643 -37270710 + L2 LINE L2 2452 3296 -17 1271 163 79 0 chr1 205393652 205393892 -37270461 - L1MA5 LINE L1 -5 6295 6037 543 182 83 8 chr1 205393901 205394022 -37270331 - L1MA4 LINE L1 -6 6294 6165 7709 186 29 50 chr1 205394024 205394568 -37269785 - L1MA5 LINE L1 -249 6051 5497 2211 102 3 7 chr1 205394568 205394908 -37269445 - AluSx SINE Alu 0 312 1 7709 186 29 50 chr1 205394908 205396137 -37268216 - L1MA5 LINE L1 -803 5497 4243 225 0 0 0 chr1 205396137 205396162 -37268191 + (TG)n Simple_repeat Simple_repeat 2 26 0 7709 186 29 50 chr1 205396162 205398062 -37266291 - L1MA5 LINE L1 -2057 4243 2658 186 220 140 0 chr1 205398089 205398139 -37266214 + MIR SINE MIR 97 153 -109 190 296 0 0 chr1 205398231 205398275 -37266078 + MIR SINE MIR 190 233 -29 2260 135 122 20 chr1 205399519 205399911 -37264442 - MSTB1 LTR MaLR 0 432 1 2277 110 0 19 chr1 205400794 205401111 -37263242 - AluSx SINE Alu -1 311 1 255 281 0 70 chr1 205401967 205402081 -37262272 + MIR SINE MIR 89 194 -68 273 333 74 0 chr1 205402249 205402357 -37261996 - MIR3 SINE MIR -4 204 89 223 299 75 60 chr1 205403874 205404008 -37260345 + MIR3 SINE MIR 10 145 -63 1048 141 43 5 chr1 205404630 205404814 -37259539 + L1MB4 LINE L1 5978 6168 -12 3319 158 40 48 chr1 205404852 205405544 -37258809 - Charlie1a DNA MER1_type -498 957 271 21313 150 33 58 chr1 205405547 205407809 -37256544 + L1MA1 LINE L1 15 2333 -5232 2076 99 3 3 chr1 205407809 205408102 -37256251 + AluSq SINE Alu 1 293 -20 21313 150 33 58 chr1 205408102 205408884 -37255469 + L1MA1 LINE L1 2333 3133 -4432 1994 131 0 13 chr1 205408884 205409190 -37255163 + AluSx SINE Alu 1 302 -10 21313 150 33 58 chr1 205409190 205410638 -37253715 + L1MA1 LINE L1 3133 4616 -2949 1706 156 26 26 chr1 205410638 205410940 -37253413 - AluJb SINE Alu 0 312 11 21313 150 33 58 chr1 205410940 205411177 -37253176 + L1MA1 LINE L1 4616 4596 -2969 1838 83 0 12 chr1 205411177 205411418 -37252935 + AluSq SINE Alu 1 238 -75 21313 150 33 58 chr1 205411418 205411720 -37252633 + L1MA1 LINE L1 4595 4903 -2662 42762 55 7 1 chr1 205411728 205417839 -37246514 + L1PA5 LINE L1 11 6158 0 1620 182 13 0 chr1 205417843 205418151 -37246202 + L1MA1 LINE L1 4898 5209 -2356 4619 72 24 58 chr1 205418152 205418913 -37245440 + SVA Other Other 132 866 -520 682 44 7 44 chr1 205419081 205419216 -37245137 - SVA Other Other -592 794 665 3789 76 23 58 chr1 205419233 205420131 -37244222 - SVA Other Other -518 868 211 8906 118 20 16 chr1 205420232 205421776 -37242577 + L1MA1 LINE L1 5210 6746 -975 1899 135 20 0 chr1 205421776 205422072 -37242281 + AluSx SINE Alu 1 302 -10 8906 118 20 16 chr1 205422072 205422153 -37242200 + L1MA1 LINE L1 6746 6825 -896 1592 158 36 33 chr1 205422153 205422457 -37241896 + AluJb SINE Alu 1 305 -7 8906 118 20 16 chr1 205422457 205423321 -37241032 + L1MA1 LINE L1 6825 7721 0 1116 205 30 57 chr1 205423379 205423642 -37240711 - Charlie1a DNA MER1_type -1199 256 1 1019 196 17 15 chr1 205424040 205424274 -37240079 + L1MA9 LINE L1 4778 5015 -1131 543 141 40 0 chr1 205424269 205424368 -37239985 + L1MA9 LINE L1 5223 5325 -821 * 1212 137 0 0 chr1 205424372 205424547 -37239806 + AluJb SINE Alu 129 303 -9 4734 135 47 82 chr1 205424553 205425292 -37239061 + L1MA9 LINE L1 5329 6025 -287 2885 65 3 0 chr1 205425292 205425644 -37238709 + THE1A LTR MaLR 1 353 -2 4734 135 47 82 chr1 205425644 205425923 -37238430 + L1MA9 LINE L1 6025 6312 0 2045 100 3 23 chr1 205425958 205426258 -37238095 - AluSx SINE Alu -18 294 1 1054 176 5 37 chr1 205426327 205426543 -37237810 + AluJo SINE Alu 92 300 -12 2283 165 34 10 chr1 205426637 205427055 -37237298 + MSTB1 LTR MaLR 5 432 0 464 251 36 63 chr1 205427268 205427491 -37236862 + MLT1G1 LTR MaLR 98 314 -281 619 279 54 20 chr1 205428086 205428290 -37236063 + MIR SINE MIR 49 259 -3 463 272 78 12 chr1 205428590 205428748 -37235605 - MIR SINE MIR -45 217 45 192 179 0 0 chr1 205429204 205429243 -37235110 + CT-rich Low_complexity Low_complexity 1 39 0 1777 119 3 101 chr1 205429401 205429728 -37234625 + AluSx SINE Alu 1 295 -17 795 161 161 0 chr1 205429984 205430133 -37234220 - MER5B DNA MER1_type -3 175 3 242 289 123 9 chr1 205430337 205430451 -37233902 - MIR SINE MIR -70 192 66 400 319 19 25 chr1 205431111 205431271 -37233082 + MLT1K LTR MaLR 90 248 -340 1285 211 146 19 chr1 205431309 205431679 -37232674 - MLT1J2 LTR MaLR -33 417 1 2387 54 0 7 chr1 205431818 205432116 -37232237 + AluY SINE Alu 1 296 -15 326 268 21 10 chr1 205432132 205432229 -37232124 + GA-rich Low_complexity Low_complexity 3 100 0 264 179 192 0 chr1 205432292 205432370 -37231983 - MER45A DNA AcHobo 0 178 86 251 307 149 18 chr1 205432668 205432782 -37231571 - L2 LINE L2 0 3313 3185 1927 116 3 33 chr1 205434073 205434376 -37229977 - AluSx SINE Alu -18 294 1 213 115 0 58 chr1 205434616 205434668 -37229685 + (TAAAA)n Simple_repeat Simple_repeat 1 49 0 358 282 55 31 chr1 205434683 205435052 -37229301 + L1MC4 LINE L1 7539 8042 0 2095 115 3 0 chr1 205435872 205436167 -37228186 + AluSg SINE Alu 1 296 -14 349 260 10 10 chr1 205437151 205437247 -37227106 + MIR3 SINE MIR 109 204 -4 277 179 385 8 chr1 205438197 205438314 -37226039 + MIR SINE MIR 47 207 -55 252 263 0 13 chr1 205438390 205438466 -37225887 + L2 LINE L2 2658 2732 -582 195 245 61 0 chr1 205439302 205439351 -37225002 + L2 LINE L2 2104 2155 -1159 291 28 0 0 chr1 205439351 205439387 -37224966 + (CA)n Simple_repeat Simple_repeat 2 37 0 193 383 25 8 chr1 205439457 205439577 -37224776 - L2 LINE L2 -263 3050 2929 258 260 114 32 chr1 205440203 205440326 -37224027 + MIR SINE MIR 20 152 -56 2039 120 3 0 chr1 205440640 205440931 -37223422 + AluSp SINE Alu 1 292 -21 225 94 0 0 chr1 205441378 205441410 -37222943 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 2023 119 24 0 chr1 205441879 205442173 -37222180 + AluSx SINE Alu 1 301 -11 265 300 135 72 chr1 205442636 205442983 -37221370 + L2 LINE L2 2904 3272 0 1323 289 88 2 chr1 205443290 205443802 -37220551 - MER115 DNA AcHobo -91 602 47 220 259 17 0 chr1 205444154 205444212 -37220141 + GA-rich Low_complexity Low_complexity 4 62 0 1805 107 59 38 chr1 205444574 205444864 -37219489 + AluJb SINE Alu 1 296 -16 2006 104 24 0 chr1 205444922 205445211 -37219142 + AluSq SINE Alu 1 296 -17 2137 109 20 0 chr1 205445266 205445568 -37218785 + AluSq SINE Alu 1 308 -5 374 169 96 96 chr1 205445610 205445701 -37218652 + L1MC4 LINE L1 7836 7929 -113 1606 181 301 8 chr1 205445701 205446182 -37218171 + LTR29 LTR ERV1 1 622 0 374 169 96 96 chr1 205446182 205446226 -37218127 + L1MC4 LINE L1 7928 7971 -71 2148 104 7 0 chr1 205446952 205447249 -37217104 + AluSx SINE Alu 1 299 -13 201 143 0 29 chr1 205447544 205447579 -37216774 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 377 283 33 69 chr1 205447652 205447861 -37216492 + MIR SINE MIR 3 206 -56 1873 204 47 26 chr1 205447931 205448425 -37215928 + Charlie4a DNA MER1_type 5 508 0 226 250 0 0 chr1 205449987 205450039 -37214314 + L2 LINE L2 3238 3289 -24 459 78 0 0 chr1 205450740 205450804 -37213549 + (TG)n Simple_repeat Simple_repeat 2 65 0 285 29 0 0 chr1 205453166 205453200 -37211153 + (TG)n Simple_repeat Simple_repeat 1 34 0 2012 150 37 3 chr1 205453441 205453794 -37210559 + MLT1A1 LTR MaLR 1 365 0 188 255 21 0 chr1 205453891 205453938 -37210415 - L2 LINE L2 0 3313 3266 2221 98 13 0 chr1 205453981 205454286 -37210067 - AluSp SINE Alu -4 309 1 265 274 114 31 chr1 205454334 205454544 -37209809 + MLT1J1 LTR MaLR 1 185 -261 482 317 71 6 chr1 205454586 205454769 -37209584 + MLT1J2 LTR MaLR 245 439 -11 2533 93 0 0 chr1 205455058 205455368 -37208985 - AluSq SINE Alu -3 310 1 425 214 34 0 chr1 205455396 205455485 -37208868 - MER82 DNA MER2_type 0 653 562 1994 122 0 36 chr1 205455485 205455651 -37208702 - AluSg SINE Alu -17 293 141 2493 76 0 10 chr1 205455651 205455955 -37208398 - AluYa5 SINE Alu -8 303 3 1994 122 0 36 chr1 205455955 205456092 -37208261 - AluSg SINE Alu -169 141 1 985 110 7 7 chr1 205456092 205456228 -37208125 - AluSq/x SINE Alu -177 136 1 352 92 231 0 chr1 205456239 205456304 -37208049 - MADE1 DNA Mariner 0 80 1 * 2322 190 69 43 chr1 205456304 205456854 -37207499 - MER82 DNA MER2_type -89 564 1 230 382 64 9 chr1 205458113 205458223 -37206130 + L3 LINE CR1 238 353 -1224 392 232 77 52 chr1 205458620 205458775 -37205578 + LTR16C LTR ERVL 319 477 -14 1923 129 13 36 chr1 205458803 205459112 -37205241 + AluSx SINE Alu 1 302 -10 260 357 35 7 chr1 205459942 205460085 -37204268 - L2 LINE L2 0 3272 3126 250 330 91 34 chr1 205460198 205460374 -37203979 - MIR3 SINE MIR -7 201 16 261 0 0 0 chr1 205460513 205460542 -37203811 + (TG)n Simple_repeat Simple_repeat 2 30 0 1635 143 152 76 chr1 205461001 205461421 -37202932 - LTR47A LTR ERVL 0 452 1 21 0 0 0 chr1 205461750 205461771 -37202582 + AT_rich Low_complexity Low_complexity 1 21 0 488 311 68 24 chr1 205462538 205462775 -37201578 + MIR SINE MIR 3 247 -15 2144 149 0 0 chr1 205463159 205463467 -37200886 - AluSx SINE Alu -4 308 1 2581 60 0 0 chr1 205463580 205463881 -37200472 - AluY SINE Alu -10 301 1 348 319 33 0 chr1 205464247 205464338 -37200015 - MIR SINE MIR -60 202 109 317 176 0 0 chr1 205465290 205465341 -37199012 + MER66A LTR ERV1 287 337 -141 2117 124 0 21 chr1 205465428 205465564 -37198789 + AluSx SINE Alu 1 138 -181 2646 55 0 3 chr1 205465564 205465876 -37198477 + AluY SINE Alu 1 311 0 2117 124 0 21 chr1 205465876 205466064 -37198289 + AluSx SINE Alu 138 319 0 536 250 32 13 chr1 205466072 205466228 -37198125 + L1MC5 LINE L1 6689 6847 -1114 * 611 264 0 34 chr1 205466222 205466400 -37197953 + L1MC4 LINE L1 7729 7900 -142 2156 200 22 60 chr1 205466429 205466897 -37197456 + MLT1E LTR MaLR 79 526 -67 2281 110 3 3 chr1 205466897 205467198 -37197155 - AluSq SINE Alu -12 301 1 2156 200 22 60 chr1 205467198 205467264 -37197089 + MLT1E LTR MaLR 526 593 0 2377 79 7 3 chr1 205467913 205468203 -37196150 + AluSc SINE Alu 1 291 -18 650 268 91 78 chr1 205468225 205468440 -37195913 + L2 LINE L2 2924 3148 -165 2207 132 3 0 chr1 205468440 205468750 -37195603 - AluSx SINE Alu -1 311 1 650 268 91 78 chr1 205468750 205468919 -37195434 + L2 LINE L2 3148 3313 0 540 321 77 9 chr1 205469028 205469249 -37195104 + MIR SINE MIR 16 251 -11 2159 126 3 0 chr1 205469253 205469546 -37194807 - AluSq SINE Alu -19 294 1 227 328 29 6 chr1 205469546 205469720 -37194633 - L1M4 LINE L1 -2799 3347 3170 346 200 32 11 chr1 205469731 205469826 -37194527 - L1ME2 LINE L1 -1 6163 6067 1011 112 0 0 chr1 205469828 205469962 -37194391 - AluSq/x SINE Alu -179 134 1 736 242 32 47 chr1 205469991 205470246 -37194107 - L1MD3 LINE L1 -1 8039 7801 1887 162 16 7 chr1 205470340 205470649 -37193704 - AluJb SINE Alu 0 312 1 929 125 0 22 chr1 205471105 205471241 -37193112 + FLAM_C SINE Alu 1 133 0 275 286 80 45 chr1 205471264 205471376 -37192977 - MIR SINE MIR -126 136 21 187 256 47 0 chr1 205471799 205471842 -37192511 - L2 LINE L2 -11 3302 3258 374 250 0 45 chr1 205471879 205471991 -37192362 - MIR SINE MIR -147 115 9 700 331 54 16 chr1 205472020 205472262 -37192091 + MIR SINE MIR 2 252 -10 405 204 99 56 chr1 205472455 205472597 -37191756 - MIR SINE MIR -25 237 90 686 153 29 12 chr1 205472704 205472838 -37191515 - MER5A DNA MER1_type 0 189 38 695 211 61 7 chr1 205473122 205473269 -37191084 - FRAM SINE Alu -11 155 1 319 204 144 61 chr1 205473638 205473770 -37190583 + MIR SINE MIR 3 145 -63 2308 79 3 0 chr1 205474886 205475177 -37189176 - AluSp SINE Alu -21 292 1 330 274 136 16 chr1 205475526 205475695 -37188658 + MIR SINE MIR 23 203 -59 805 104 0 9 chr1 205476348 205476454 -37187899 - AluJb SINE Alu -207 105 1 384 250 250 19 chr1 205477277 205477705 -37186648 + MLT1K LTR MaLR 7 569 -19 300 304 33 11 chr1 205477846 205477938 -37186415 + L1MC4 LINE L1 6608 6701 -1341 180 176 0 0 chr1 205478005 205478039 -37186314 + GA-rich Low_complexity Low_complexity 2 35 0 848 280 62 86 chr1 205478377 205478848 -37185505 - L2 LINE L2 0 3272 2791 2337 95 0 29 chr1 205478848 205479163 -37185190 + AluSx SINE Alu 1 306 -6 848 280 62 86 chr1 205479163 205479674 -37184679 - L2 LINE L2 -481 2791 2264 429 246 168 6 chr1 205479691 205479852 -37184501 + MIR3 SINE MIR 24 205 -3 198 336 55 27 chr1 205480454 205480564 -37183789 - L2 LINE L2 -12 3301 3189 2562 59 0 3 chr1 205480661 205480967 -37183386 + AluY SINE Alu 1 305 -6 610 276 120 13 chr1 205480983 205481208 -37183145 - MIR SINE MIR -8 254 6 250 239 261 11 chr1 205481289 205481377 -37182976 + L2 LINE L2 3159 3268 -4 745 110 0 0 chr1 205481777 205481877 -37182476 + AluSx SINE Alu 11 110 -203 1358 132 0 0 chr1 205481932 205482122 -37182231 + AluSx SINE Alu 108 297 -15 182 281 230 21 chr1 205482219 205482454 -37181899 + L2 LINE L2 2834 3117 -155 206 283 0 0 chr1 205482565 205482618 -37181735 + L2 LINE L2 3243 3295 -18 584 297 98 15 chr1 205482667 205482897 -37181456 - MIR SINE MIR -10 252 5 308 294 27 0 chr1 205482947 205483047 -37181306 + MIR3 SINE MIR 72 174 -34 1585 149 16 87 chr1 205483784 205483993 -37180360 + AluJo SINE Alu 3 183 -129 3882 145 29 5 chr1 205483993 205484500 -37179853 + MER41B LTR ERV1 2 528 -107 2315 131 0 0 chr1 205484500 205484812 -37179541 - AluSx SINE Alu 0 312 1 3882 145 29 5 chr1 205484812 205484923 -37179430 + MER41B LTR ERV1 528 635 0 1585 149 16 87 chr1 205484923 205485034 -37179319 + AluJo SINE Alu 183 300 -12 23 78 0 0 chr1 205486032 205486083 -37178270 + AT_rich Low_complexity Low_complexity 1 51 0 2164 98 34 0 chr1 205486258 205486554 -37177799 + AluSx SINE Alu 1 306 -6 2079 157 21 18 chr1 205486567 205486955 -37177398 + MLT2C1 LTR ERVL 1 389 -8 21 0 0 0 chr1 205487714 205487735 -37176618 + AT_rich Low_complexity Low_complexity 1 21 0 1338 171 40 73 chr1 205488991 205489265 -37175088 + AluJo SINE Alu 1 265 -47 54 68 0 0 chr1 205489266 205489369 -37174984 + AT_rich Low_complexity Low_complexity 1 103 0 236 189 44 22 chr1 205489376 205489466 -37174887 + (TATAA)n Simple_repeat Simple_repeat 2 93 0 1388 122 15 0 chr1 205489510 205489736 -37174617 - AluSg/x SINE Alu 0 311 83 2295 117 0 3 chr1 205489746 205490053 -37174300 - AluSx SINE Alu -6 306 1 1115 191 0 0 chr1 205490180 205490374 -37173979 + MER58A DNA MER1_type 7 200 -24 191 224 79 66 chr1 205491866 205491942 -37172411 + L2 LINE L2 3234 3310 -3 682 158 136 172 chr1 205492475 205492829 -37171524 - MER58B DNA MER1_type 0 341 1 1298 167 5 89 chr1 205493012 205493257 -37171096 + L1M4 LINE L1 5053 5256 -890 2162 116 0 0 chr1 205493257 205493532 -37170821 - AluSx SINE Alu -17 295 21 1298 167 5 89 chr1 205493532 205493669 -37170684 + L1M4 LINE L1 5256 5403 -743 322 266 198 54 chr1 205494197 205494475 -37169878 + L2 LINE L2 2928 3245 -27 861 204 0 0 chr1 205495735 205495897 -37168456 + MLT1A1 LTR MaLR 203 364 -1 857 152 73 55 chr1 205495897 205496062 -37168291 - FRAM SINE Alu -13 163 1 180 0 0 0 chr1 205496078 205496098 -37168255 + (T)n Simple_repeat Simple_repeat 1 20 0 2148 109 81 32 chr1 205496106 205496453 -37167900 + THE1B LTR MaLR 1 364 0 606 181 95 0 chr1 205496453 205496557 -37167796 - FLAM_C SINE Alu -18 115 1 1814 212 9 2 chr1 205496584 205497014 -37167339 + L1M4 LINE L1 4661 5093 -1053 862 114 20 20 chr1 205497064 205497213 -37167140 + MLT1A1 LTR MaLR 12 160 -205 2297 81 21 0 chr1 205497214 205497498 -37166855 + AluY SINE Alu 1 290 -21 1116 171 113 40 chr1 205497719 205497993 -37166360 + MSTD LTR MaLR 1 294 -102 4219 101 0 5 chr1 205497993 205498550 -37165803 - MER41A LTR ERV1 0 554 1 764 52 0 0 chr1 205498554 205498650 -37165703 - MER41A-int LTR ERV1 -6 5940 5845 2399 117 36 85 chr1 205498681 205499187 -37165166 - PABL_A-int LTR ERV1 -2238 2777 2297 2369 88 0 7 chr1 205499187 205499481 -37164872 + AluSc SINE Alu 1 292 -17 351 161 48 0 chr1 205499519 205499581 -37164772 - MIR SINE MIR -2 260 196 1940 155 3 23 chr1 205499876 205500186 -37164167 + AluJo SINE Alu 9 312 0 492 62 0 0 chr1 205500188 205500252 -37164101 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 373 196 98 56 chr1 205500534 205500677 -37163676 - MER115 DNA AcHobo -252 441 293 452 146 45 0 chr1 205500687 205500776 -37163577 + MER53 DNA DNA 97 189 0 545 278 72 0 chr1 205500817 205501026 -37163327 - MER115 DNA AcHobo -451 242 19 1981 174 0 0 chr1 205501122 205501432 -37162921 - AluJb SINE Alu -1 311 2 457 109 18 118 chr1 205501510 205501573 -37162780 - MER53 DNA DNA 0 189 121 2396 94 3 0 chr1 205501573 205501872 -37162481 - AluSq SINE Alu -13 300 1 2509 53 0 13 chr1 205501872 205502175 -37162178 - AluY SINE Alu -12 299 1 2124 132 7 3 chr1 205502175 205502470 -37161883 - AluSx SINE Alu -16 296 1 457 109 18 118 chr1 205502470 205502514 -37161839 - MER53 DNA DNA -65 124 91 1226 195 152 13 chr1 205502518 205502821 -37161532 - MER2 DNA MER2_type 0 345 1 339 148 0 119 chr1 205502821 205502915 -37161438 - MER53 DNA DNA -107 82 1 203 299 196 10 chr1 205502920 205503017 -37161336 + MIR SINE MIR 21 135 -127 266 215 398 0 chr1 205503346 205503439 -37160914 - MIR SINE MIR -7 255 126 454 249 151 84 chr1 205503469 205503814 -37160539 + L2 LINE L2 2945 3312 -1 283 268 58 24 chr1 205503829 205504025 -37160328 - MIR3 SINE MIR 0 262 14 229 340 125 14 chr1 205504091 205504235 -37160118 + L2 LINE L2 3087 3246 -26 194 280 93 0 chr1 205504273 205504348 -37160005 - MIR3 SINE MIR -24 184 103 452 261 124 43 chr1 205504480 205504641 -37159712 + MIR SINE MIR 82 255 -7 994 251 83 53 chr1 205505491 205505581 -37158772 - L1M4 LINE L1 -1934 4212 4126 2285 104 0 3 chr1 205505581 205505878 -37158475 + AluY SINE Alu 1 296 -15 994 251 83 53 chr1 205505878 205506405 -37157948 - L1M4 LINE L1 -2020 4126 3586 533 239 190 38 chr1 205506407 205506423 -37157930 - L1M4 LINE L1 -2793 3353 3341 564 172 115 33 chr1 205506423 205506545 -37157808 - FLAM_A SINE Alu -1 132 1 533 239 190 38 chr1 205506545 205506922 -37157431 - L1M4 LINE L1 -2805 3341 2900 724 271 84 4 chr1 205506955 205507180 -37157173 - L1MC/D LINE L1 -2052 5756 5514 2008 104 22 4 chr1 205507338 205507616 -37156737 + AluSp SINE Alu 1 283 -30 254 219 0 0 chr1 205507854 205507895 -37156458 + L1ME LINE L1 408 448 -5622 379 246 164 23 chr1 205508674 205508845 -37155508 + MLT1K LTR MaLR 367 561 -27 1499 193 88 44 chr1 205510317 205510727 -37153626 + MSTC LTR MaLR 1 428 0 380 301 118 35 chr1 205510748 205510977 -37153376 - HAL1 LINE L1 -14 2493 2246 2236 114 0 3 chr1 205511050 205511349 -37153004 + AluSx SINE Alu 1 298 -14 200 325 60 12 chr1 205511448 205511531 -37152822 + L2 LINE L2 3226 3312 -1 22 35 0 0 chr1 205512162 205512191 -37152162 + AT_rich Low_complexity Low_complexity 1 29 0 755 122 22 77 chr1 205512335 205512516 -37151837 - L1MC4 LINE L1 0 8042 7872 2060 183 5 37 chr1 205513005 205513409 -37150944 + MLT2B1 LTR ERVL 7 397 -123 1236 193 5 0 chr1 205513378 205513588 -37150765 + MLT2B1 LTR ERVL 267 477 -43 1285 98 93 0 chr1 205513588 205513782 -37150571 - Tigger5 DNA MER2_type 0 2323 2112 1848 186 3 3 chr1 205513787 205514093 -37150260 - Tigger5 DNA MER2_type -2016 307 2 346 47 0 0 chr1 205514093 205514133 -37150220 + MLT2B1 LTR ERVL 470 509 -6 2175 134 10 0 chr1 205514359 205514658 -37149695 - AluSx SINE Alu -10 302 1 281 211 21 95 chr1 205515948 205516043 -37148310 - MER104 DNA Tc2 -73 107 20 1566 275 144 20 chr1 205516202 205516851 -37147502 - L2 LINE L2 -239 3074 2321 3912 92 18 4 chr1 205516851 205517397 -37146956 - MER41A LTR ERV1 0 554 1 1566 275 144 20 chr1 205517397 205517452 -37146901 - L2 LINE L2 -992 2321 2274 3641 105 52 34 chr1 205517872 205518188 -37146165 + MER7C DNA MER2_type 2 336 -2692 1972 154 0 7 chr1 205518188 205518486 -37145867 + AluSx SINE Alu 3 298 -14 3641 105 52 34 chr1 205518486 205518759 -37145594 + MER7C DNA MER2_type 336 602 0 2051 108 10 7 chr1 205518871 205519168 -37145185 - AluSx SINE Alu -8 304 7 837 293 62 42 chr1 205519178 205519307 -37145046 - L1M4 LINE L1 -982 5164 5039 582 169 110 17 chr1 205519307 205519425 -37144928 - FLAM_A SINE Alu -1 132 4 837 293 62 42 chr1 205519425 205519957 -37144396 - L1M4 LINE L1 -1107 5039 4490 584 241 47 24 chr1 205519961 205520131 -37144222 + L1MC5 LINE L1 7702 7875 -86 1225 230 43 13 chr1 205520422 205520726 -37143627 + L1ME LINE L1 5341 5653 -513 296 167 0 0 chr1 205520726 205520774 -37143579 - MER58D DNA MER1_type 0 386 339 2222 71 17 27 chr1 205520908 205521204 -37143149 + AluY SINE Alu 1 293 -18 2828 76 0 11 chr1 205521486 205521854 -37142499 + THE1B LTR MaLR 1 364 0 443 313 7 13 chr1 205523028 205523178 -37141175 - Charlie8 DNA MER1_type -2145 272 124 1930 118 4 25 chr1 205523514 205523794 -37140559 + AluSx SINE Alu 7 280 -32 261 0 0 0 chr1 205523794 205523826 -37140527 + AluY SINE Alu 234 265 -36 419 122 0 40 chr1 205523826 205523900 -37140453 + Alu SINE Alu 223 293 -18 301 317 134 36 chr1 205523939 205524163 -37140190 + MIR SINE MIR 6 251 -11 1201 209 219 17 chr1 205524607 205525009 -37139344 + MLT1D LTR MaLR 23 505 0 23 33 0 0 chr1 205525121 205525151 -37139202 + AT_rich Low_complexity Low_complexity 1 30 0 285 263 10 92 chr1 205525306 205525462 -37138891 + MER5A DNA MER1_type 48 175 -3 1812 180 18 13 chr1 205525473 205525857 -37138496 - MER58D DNA MER1_type 0 386 1 979 277 137 83 chr1 205526697 205527869 -37136484 + L2 LINE L2 1686 2958 -314 2541 61 0 10 chr1 205527869 205528181 -37136172 - AluY SINE Alu -2 309 1 979 277 137 83 chr1 205528181 205528512 -37135841 + L2 LINE L2 2958 3270 -2 489 250 40 47 chr1 205528843 205528991 -37135362 - MIR SINE MIR -110 152 6 2268 102 3 0 chr1 205529391 205529695 -37134658 + AluSx SINE Alu 2 306 -6 182 374 24 24 chr1 205530144 205530227 -37134126 + L2 LINE L2 2970 3052 -220 1851 140 3 14 chr1 205530294 205530587 -37133766 + AluSx SINE Alu 13 302 -10 1946 142 37 9 chr1 205530650 205530974 -37133379 + L1PA16 LINE L1 5814 6146 -20 3778 242 65 12 chr1 205530993 205532185 -37132168 + L1MC4a LINE L1 3875 5129 -1017 294 71 24 0 chr1 205532204 205532246 -37132107 + MER57A LTR ERV1 295 337 -66 358 225 116 22 chr1 205532253 205532391 -37131962 + L1MC4a LINE L1 5127 5277 -869 2236 89 0 0 chr1 205532391 205532706 -37131647 + AluSx SINE Alu 16 330 0 408 127 14 14 chr1 205533099 205533170 -37131183 + AluS SINE Alu 1 71 -247 268 241 0 17 chr1 205533270 205533328 -37131025 - AluS SINE Alu -235 68 12 1758 156 3 27 chr1 205533917 205534212 -37130141 - AluJb SINE Alu -24 288 1 893 223 107 38 chr1 205534418 205534613 -37129740 + L1MC4a LINE L1 5559 5786 -2022 1269 78 113 0 chr1 205534613 205534817 -37129536 + L1MB2 LINE L1 5943 6169 -2 893 223 107 38 chr1 205534817 205534939 -37129414 + L1MC4a LINE L1 5786 5898 -1910 2452 71 3 0 chr1 205534962 205535273 -37129080 - AluSp SINE Alu -1 312 1 204 163 0 0 chr1 205535357 205535400 -37128953 + (CA)n Simple_repeat Simple_repeat 2 44 0 1516 201 25 33 chr1 205535886 205536249 -37128104 + MLT1C LTR MaLR 108 467 0 2079 138 3 3 chr1 205536580 205536884 -37127469 + AluSx SINE Alu 1 304 -8 231 114 0 0 chr1 205536902 205536937 -37127416 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 490 167 0 0 chr1 205536944 205537022 -37127331 - AluJ/FLAM SINE Alu -232 80 3 224 59 29 0 chr1 205537552 205537586 -37126767 + (CA)n Simple_repeat Simple_repeat 2 36 0 1620 197 7 0 chr1 205538009 205538303 -37126050 + AluJo SINE Alu 1 296 -16 339 325 39 19 chr1 205539279 205539433 -37124920 - MER20 DNA MER1_type -4 215 59 2176 88 35 3 chr1 205539730 205540015 -37124338 - AluSc SINE Alu -15 294 1 2305 94 3 0 chr1 205540917 205541214 -37123139 - AluSx SINE Alu -14 298 1 1979 123 24 0 chr1 205542105 205542397 -37121956 - AluSx SINE Alu -8 304 6 545 272 68 12 chr1 205542559 205542721 -37121632 + MIR SINE MIR 59 229 -33 30 45 0 0 chr1 205542826 205542870 -37121483 + AT_rich Low_complexity Low_complexity 1 44 0 2198 96 3 3 chr1 205543854 205544146 -37120207 + AluSx SINE Alu 2 293 -19 703 263 105 42 chr1 205544733 205545218 -37119135 + HAL1b LINE L1 1 592 -756 1529 109 0 0 chr1 205545218 205545420 -37118933 + AluSg/x SINE Alu 95 296 -16 703 263 105 42 chr1 205545420 205545758 -37118595 + HAL1b LINE L1 592 907 -441 239 253 51 62 chr1 205546099 205546277 -37118076 + L1M4 LINE L1 2147 2322 -3824 22 0 0 0 chr1 205547152 205547174 -37117179 + AT_rich Low_complexity Low_complexity 1 22 0 2388 92 3 0 chr1 205547616 205547921 -37116432 - AluSp SINE Alu -7 306 1 1999 123 3 7 chr1 205547934 205548248 -37116105 - AluSq SINE Alu 0 313 1 198 0 0 0 chr1 205548361 205548383 -37115970 + (TTATA)n Simple_repeat Simple_repeat 4 25 0 4025 85 9 25 chr1 205549213 205549444 -37114909 - MER41A LTR ERV1 0 554 321 2653 45 0 0 chr1 205549444 205549755 -37114598 - AluY SINE Alu 0 311 1 4025 85 9 25 chr1 205549755 205550086 -37114267 - MER41A LTR ERV1 -233 321 1 21 0 0 0 chr1 205550742 205550763 -37113590 + AT_rich Low_complexity Low_complexity 1 21 0 1838 104 48 0 chr1 205551278 205551529 -37112824 - AluSx SINE Alu -17 295 33 2411 76 3 10 chr1 205551866 205552169 -37112184 - AluSp SINE Alu -12 301 1 1113 168 0 0 chr1 205552483 205552662 -37111691 - AluSg/x SINE Alu -14 298 120 25 0 0 0 chr1 205552836 205552861 -37111492 + AT_rich Low_complexity Low_complexity 1 25 0 1901 131 67 0 chr1 205553400 205553683 -37110670 + AluSx SINE Alu 1 302 -10 283 200 0 18 chr1 205554279 205554334 -37110019 - Alu SINE Alu -246 54 1 2302 103 0 3 chr1 205554590 205554902 -37109451 - AluY SINE Alu 0 311 1 256 51 0 0 chr1 205554902 205554941 -37109412 - AluSg1 SINE Alu -4 298 260 2001 124 0 3 chr1 205554941 205555224 -37109129 - AluSg1 SINE Alu -27 282 1 2086 272 121 21 chr1 205555411 205556237 -37108116 + HAL1 LINE L1 16 924 -1583 227 190 76 13 chr1 205556367 205556446 -37107907 + HAL1 LINE L1 995 1078 -1429 209 213 0 0 chr1 205556476 205556523 -37107830 + A-rich Low_complexity Low_complexity 1 47 0 725 253 137 0 chr1 205556587 205556828 -37107525 + HAL1 LINE L1 1560 1833 -674 675 197 23 8 chr1 205556931 205557063 -37107290 + MER58A DNA MER1_type 35 168 0 2967 141 58 22 chr1 205557063 205557628 -37106725 - LTR24B LTR ERV1 0 635 1 313 164 18 0 chr1 205557628 205557683 -37106670 + MER58D DNA MER1_type 327 382 -4 1207 239 44 32 chr1 205557685 205558189 -37106164 + HAL1 LINE L1 1952 2500 -7 289 342 101 0 chr1 205558241 205558390 -37105963 - MER117 DNA MER1_type 0 197 34 212 286 65 26 chr1 205558628 205558705 -37105648 + L2 LINE L2 3193 3272 0 317 319 18 41 chr1 205559456 205559625 -37104728 - L2 LINE L2 -47 3266 3102 2186 106 3 0 chr1 205561252 205561554 -37102799 - AluSx SINE Alu -9 303 1 304 224 149 52 chr1 205562190 205562258 -37102095 + MIR SINE MIR 89 149 -113 2050 100 17 17 chr1 205562258 205562558 -37101795 - AluSg SINE Alu -10 300 1 304 224 149 52 chr1 205562558 205562623 -37101730 + MIR SINE MIR 149 235 -27 1363 134 0 79 chr1 205562744 205562998 -37101355 + AluJb SINE Alu 9 242 -70 27 0 0 0 chr1 205565399 205565426 -37098927 + AT_rich Low_complexity Low_complexity 1 27 0 292 308 28 0 chr1 205565432 205565539 -37098814 + L3 LINE CR1 1437 1546 -31 569 220 61 0 chr1 205565751 205565883 -37098470 - MER45A DNA AcHobo 0 178 39 564 243 73 0 chr1 205568410 205568546 -37095807 - L2 LINE L2 -9 3304 3159 1383 229 12 8 chr1 205568549 205568965 -37095388 - MER82 DNA MER2_type 0 653 197 435 188 0 0 chr1 205568965 205569034 -37095319 + Tigger2 DNA MER2_type 1 69 -2649 * 2830 97 32 25 chr1 205569024 205569467 -37094886 + Tigger2 DNA MER2_type 2273 2718 0 1019 201 59 0 chr1 205569467 205569650 -37094703 - MER82 DNA MER2_type -451 202 8 1371 288 131 20 chr1 205569668 205569952 -37094401 - L2 LINE L2 -177 3136 2885 1579 126 20 108 chr1 205569952 205570294 -37094059 + AluYb8 SINE Alu 1 312 -6 1371 288 131 20 chr1 205570294 205570819 -37093534 - L2 LINE L2 -428 2885 2225 336 319 11 11 chr1 205571440 205571531 -37092822 + MIR SINE MIR 2 92 -170 244 214 0 0 chr1 205571576 205571618 -37092735 + L2 LINE L2 3211 3252 -20 1752 204 67 34 chr1 205571877 205572324 -37092029 - MLT1C LTR MaLR 0 467 6 302 328 26 35 chr1 205572357 205572473 -37091880 - MIR SINE MIR -98 164 50 1040 163 0 0 chr1 205572521 205572687 -37091666 - FRAM SINE Alu 0 166 1 295 297 69 50 chr1 205573068 205573270 -37091083 + MLT1K LTR MaLR 378 583 -5 1112 133 0 12 chr1 205573360 205573533 -37090820 + FRAM SINE Alu 1 170 -6 1832 219 194 12 chr1 205573694 205574188 -37090165 + MLT1E LTR MaLR 1 584 -9 297 0 0 0 chr1 205574607 205574640 -37089713 + (TG)n Simple_repeat Simple_repeat 1 33 0 2231 102 3 0 chr1 205574973 205575278 -37089075 + AluSx SINE Alu 1 306 -6 2627 122 41 5 chr1 205575599 205576010 -37088343 - MSTB LTR MaLR 0 426 1 233 354 82 40 chr1 205576317 205576589 -37087764 + L2 LINE L2 2687 2969 -303 1023 229 94 83 chr1 205576625 205577105 -37087248 + MLT1K LTR MaLR 88 572 -16 223 276 144 63 chr1 205577121 205577295 -37087058 + L2 LINE L2 2970 3157 -115 2101 126 0 0 chr1 205577484 205577794 -37086559 + AluSx SINE Alu 1 310 -2 1963 138 7 7 chr1 205578933 205579238 -37085115 + AluSx SINE Alu 1 305 -7 558 0 0 0 chr1 205579359 205579421 -37084932 + (CA)n Simple_repeat Simple_repeat 2 63 0 688 361 62 18 chr1 205580328 205580669 -37083684 - L2 LINE L2 0 3272 2917 487 246 42 0 chr1 205581163 205581305 -37083048 + MER103 DNA DNA 9 156 -10 226 255 0 0 chr1 205581747 205581798 -37082555 - L2 LINE L2 -78 3194 3144 2662 224 58 50 chr1 205581799 205582358 -37081995 + L1ME1 LINE L1 114 667 -5729 2253 63 0 3 chr1 205582358 205582645 -37081708 + AluY SINE Alu 25 310 -1 2662 224 58 50 chr1 205582645 205582730 -37081623 + L1ME1 LINE L1 667 750 -5646 2092 136 0 0 chr1 205582730 205583031 -37081322 + AluSx SINE Alu 1 301 -11 2662 224 58 50 chr1 205583031 205583157 -37081196 + L1ME1 LINE L1 750 891 -5505 562 230 9 0 chr1 205583165 205583278 -37081075 - MER81 DNA DNA 0 114 1 1241 239 76 3 chr1 205583278 205583610 -37080743 + L1ME1 LINE L1 4087 4450 -1765 2307 126 30 30 chr1 205583610 205583974 -37080379 - THE1B LTR MaLR 0 364 1 1241 239 76 3 chr1 205583974 205584009 -37080344 + L1ME1 LINE L1 4450 4481 -1734 666 168 8 17 chr1 205584012 205584131 -37080222 + FRAM SINE Alu 38 155 -21 26 30 0 0 chr1 205584131 205584164 -37080189 + AT_rich Low_complexity Low_complexity 1 33 0 489 220 0 0 chr1 205584164 205584273 -37080080 + L1ME1 LINE L1 4485 4593 -1622 309 218 141 13 chr1 205584281 205584359 -37079994 + L1ME1 LINE L1 4828 4915 -1300 1406 212 189 12 chr1 205584361 205584790 -37079563 + MLT1D LTR MaLR 1 505 0 475 216 32 0 chr1 205584796 205584921 -37079432 + L1ME1 LINE L1 4919 5047 -1168 681 213 140 20 chr1 205584921 205585216 -37079137 - Tigger7 DNA MER2_type 0 2491 2 3499 215 70 32 chr1 205585216 205585918 -37078435 + L1ME1 LINE L1 5045 5795 -440 2572 119 5 16 chr1 205585918 205586297 -37078056 - THE1C LTR MaLR 0 375 1 3499 215 70 32 chr1 205586297 205586751 -37077602 + L1ME1 LINE L1 5795 6230 -5 2247 95 0 3 chr1 205586781 205587085 -37077268 + AluSx SINE Alu 1 303 -9 1100 139 0 11 chr1 205587671 205587851 -37076502 - FRAM SINE Alu -4 172 1 26 50 0 0 chr1 205587856 205587896 -37076457 + AT_rich Low_complexity Low_complexity 1 40 0 592 71 51 51 chr1 205587945 205588007 -37076346 + L1MB2 LINE L1 6069 6133 -38 2272 94 3 0 chr1 205588007 205588316 -37076037 + AluSp SINE Alu 1 310 -3 592 71 51 51 chr1 205588316 205588351 -37076002 + L1MB2 LINE L1 6132 6166 -5 1714 158 18 3 chr1 205588523 205588636 -37075717 + AluSx SINE Alu 18 128 -184 207 0 0 0 chr1 205588636 205588659 -37075694 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1714 158 18 3 chr1 205588659 205588830 -37075523 + AluSx SINE Alu 128 306 -6 467 177 0 0 chr1 205589227 205589306 -37075047 - MIR SINE MIR -77 185 107 2123 114 10 0 chr1 205589311 205589610 -37074743 + AluJb SINE Alu 1 302 -10 1551 163 71 42 chr1 205589645 205589691 -37074662 - L1MB2 LINE L1 -3 6168 6125 2245 85 0 7 chr1 205589691 205589984 -37074369 - AluSx SINE Alu -20 292 2 1551 163 71 42 chr1 205589984 205590274 -37074079 - L1MB2 LINE L1 -46 6125 5822 789 149 13 7 chr1 205590274 205590428 -37073925 + L1MB3 LINE L1 6028 6182 -1 248 219 151 27 chr1 205590440 205590513 -37073840 - MIR SINE MIR -146 116 35 2006 111 13 20 chr1 205591217 205591523 -37072830 + AluSq SINE Alu 1 304 -9 1204 168 113 40 chr1 205591959 205592233 -37072120 + MSTD LTR MaLR 1 294 -102 4196 101 0 5 chr1 205592233 205592790 -37071563 - MER41A LTR ERV1 0 554 1 805 52 0 0 chr1 205592794 205592890 -37071463 - MER41A-int LTR ERV1 -6 5940 5845 2833 117 48 81 chr1 205592905 205593427 -37070926 - MER41A-int LTR ERV1 -2238 3834 3296 2249 106 0 0 chr1 205593427 205593728 -37070625 + AluSc SINE Alu 1 301 -8 2833 117 48 81 chr1 205593728 205593805 -37070548 - MER41A-int LTR ERV1 -2776 3296 3218 2059 105 0 0 chr1 205593805 205594102 -37070251 - AluSx SINE Alu 0 302 6 2833 117 48 81 chr1 205594102 205594386 -37069967 - MER41A-int LTR ERV1 -2854 3218 2186 276 157 59 0 chr1 205594382 205594433 -37069920 - MER41A-int LTR ERV1 -3726 2220 2167 * 9172 137 134 15 chr1 205594429 205596137 -37068216 - MER41A-int LTR ERV1 -3929 2017 1 292 107 347 13 chr1 205596146 205596221 -37068132 - MER41A-int LTR ERV1 -5844 102 3 4499 73 2 0 chr1 205596225 205596775 -37067578 - MER41A LTR ERV1 -2 552 2 622 89 89 0 chr1 205596775 205596865 -37067488 + MSTD LTR MaLR 359 456 -1 1993 126 7 0 chr1 205597080 205597373 -37066980 - AluSx SINE Alu -13 299 5 325 255 85 78 chr1 205598140 205598281 -37066072 - MIR SINE MIR 0 262 121 1891 132 7 26 chr1 205598290 205598593 -37065760 + AluSx SINE Alu 10 306 -6 380 231 143 7 chr1 205598702 205598849 -37065504 - MER5A DNA MER1_type -22 167 1 390 296 32 38 chr1 205599246 205599432 -37064921 + L2 LINE L2 3128 3312 -1 2422 153 53 20 chr1 205599686 205599948 -37064405 - MLT1C LTR MaLR 0 467 182 192 40 0 0 chr1 205599948 205599973 -37064380 + (TG)n Simple_repeat Simple_repeat 2 26 0 2422 153 53 20 chr1 205599973 205600162 -37064191 - MLT1C LTR MaLR -285 182 1 472 50 0 0 chr1 205600408 205600468 -37063885 - Alu SINE Alu -15 297 238 442 282 8 30 chr1 205601492 205601623 -37062730 - MIR SINE MIR -133 129 2 354 278 64 94 chr1 205601723 205601989 -37062364 - L2 LINE L2 -29 3243 2986 1721 185 96 44 chr1 205602033 205602492 -37061861 - MER21B LTR ERV1 -52 811 329 227 133 0 33 chr1 205602669 205602729 -37061624 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 1664 123 11 35 chr1 205602940 205603225 -37061128 - AluJo SINE Alu -5 307 30 461 96 0 14 chr1 205603250 205603323 -37061030 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 2114 117 0 0 chr1 205603323 205603622 -37060731 - AluSg SINE Alu -9 301 3 332 180 90 22 chr1 205603797 205603886 -37060467 + MIR SINE MIR 137 231 -31 22 35 0 0 chr1 205604506 205604535 -37059818 + GC_rich Low_complexity Low_complexity 1 29 0 305 252 73 80 chr1 205604926 205605077 -37059276 + MER5A DNA MER1_type 38 187 -2 351 291 85 43 chr1 205605148 205605186 -37059167 + L1MC4 LINE L1 6557 6592 -1450 1766 137 11 7 chr1 205605186 205605471 -37058882 + AluJb SINE Alu 9 294 -18 351 291 85 43 chr1 205605471 205605573 -37058780 + L1MC4 LINE L1 6592 6703 -1339 375 196 72 0 chr1 205605936 205606033 -37058320 - MER5A DNA MER1_type -77 112 9 288 262 167 0 chr1 205606108 205606192 -37058161 + MER81 DNA DNA 1 98 -16 1741 163 3 29 chr1 205607123 205607429 -37056924 + AluJo SINE Alu 1 298 -14 378 272 0 22 chr1 205607440 205607532 -37056821 + L1MC4 LINE L1 6614 6703 -1339 303 200 308 39 chr1 205607553 205607683 -37056670 + MIR SINE MIR 7 171 -91 369 169 52 0 chr1 205607958 205608035 -37056318 - L1MC3 LINE L1 -8 7777 7697 255 284 82 0 chr1 205608489 205608623 -37055730 + MIR SINE MIR 85 229 -33 2043 176 68 32 chr1 205608921 205609364 -37054989 - LTR2B LTR ERV1 0 490 32 40886 60 7 6 chr1 205609383 205614469 -37049884 - Harlequin LTR ERV1 0 6896 1806 8796 65 12 15 chr1 205614449 205615612 -37048741 - Harlequin LTR ERV1 -5474 1422 263 * 2514 133 2 28 chr1 205615605 205616002 -37048351 - Harlequin LTR ERV1 -6509 387 1 * 1650 195 26 21 chr1 205616002 205616449 -37047904 - LTR2B LTR ERV1 0 490 1 2004 119 0 26 chr1 205616449 205616751 -37047602 + AluSx SINE Alu 19 312 0 233 57 29 0 chr1 205617215 205617250 -37047103 + (GA)n Simple_repeat Simple_repeat 1 36 0 318 261 49 28 chr1 205617690 205617832 -37046521 - MIR SINE MIR -58 204 60 2230 100 0 0 chr1 205618061 205618362 -37045991 - AluSg SINE Alu 0 301 1 222 246 138 0 chr1 205618445 205618510 -37045843 + MIR SINE MIR 66 139 -123 2325 178 52 9 chr1 205618879 205619345 -37045008 + MER66B LTR ERV1 1 486 0 384 335 169 20 chr1 205619799 205620585 -37043768 + L2 LINE L2 1865 2767 -547 2026 125 0 0 chr1 205621131 205621403 -37042950 + AluSx SINE Alu 1 272 -40 1657 161 106 33 chr1 205621572 205621902 -37042451 - MLT1A1 LTR MaLR -11 354 1 321 300 11 0 chr1 205622683 205622773 -37041580 - L2 LINE L2 0 3313 3223 300 326 20 0 chr1 205622801 205622899 -37041454 - L2 LINE L2 -907 2407 2308 2398 106 0 0 chr1 205622922 205623233 -37041120 + AluSx SINE Alu 2 312 0 1661 160 32 11 chr1 205623252 205623534 -37040819 + AluJo SINE Alu 1 288 -24 216 231 167 0 chr1 205623894 205623972 -37040381 + L2 LINE L2 3223 3313 0 2544 53 0 3 chr1 205624377 205624677 -37039676 - AluY SINE Alu -10 301 3 1493 121 14 5 chr1 205624680 205624895 -37039458 - AluSc SINE Alu -4 305 89 1118 108 0 0 chr1 205624895 205625039 -37039314 - AluSq/x SINE Alu -168 144 1 244 236 55 0 chr1 205625107 205625162 -37039191 + L2 LINE L2 3209 3266 -6 2269 97 17 0 chr1 205625738 205626036 -37038317 - AluSg SINE Alu -7 303 1 1742 198 70 8 chr1 205626043 205626416 -37037937 - MSTD LTR MaLR 0 396 1 1966 121 13 35 chr1 205626976 205627289 -37037064 - AluSx SINE Alu -6 306 1 830 112 15 30 chr1 205627289 205627423 -37036930 - AluJo SINE Alu -176 136 5 2085 122 32 0 chr1 205629383 205629685 -37034668 + AluJb SINE Alu 1 311 0 2220 124 0 16 chr1 205630058 205630372 -37033981 - AluSx SINE Alu -3 309 1 253 280 11 21 chr1 205630729 205630822 -37033531 + MER5A DNA MER1_type 4 95 -94 29 28 0 0 chr1 205630868 205630904 -37033449 + AT_rich Low_complexity Low_complexity 1 36 0 372 251 97 39 chr1 205631062 205631269 -37033084 - L1ME LINE L1 -354 5767 5549 243 100 0 50 chr1 205632672 205632732 -37031621 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 1153 161 32 42 chr1 205632749 205632966 -37031387 + MER20 DNA MER1_type 1 215 -4 828 148 7 47 chr1 205634871 205635020 -37029333 - FLAM_C SINE Alu 0 143 1 2320 112 0 0 chr1 205635453 205635757 -37028596 - AluSq SINE Alu -9 304 1 2503 67 3 0 chr1 205636702 205637002 -37027351 - AluY SINE Alu -10 301 1 21 0 0 0 chr1 205637851 205637872 -37026481 + AT_rich Low_complexity Low_complexity 1 21 0 841 215 17 0 chr1 205638522 205638694 -37025659 + FAM SINE Alu 1 175 0 293 267 195 23 chr1 205638882 205639103 -37025250 + L2 LINE L2 2939 3197 -116 189 121 0 0 chr1 205639441 205639474 -37024879 + (A)n Simple_repeat Simple_repeat 1 33 0 959 175 30 0 chr1 205640923 205641089 -37023264 + MER20 DNA MER1_type 1 171 -48 2905 134 78 0 chr1 205641097 205641561 -37022792 + Ricksha DNA DNA 1 500 -754 2589 147 15 4 chr1 205641562 205642222 -37022131 + Ricksha DNA DNA 1190 1892 -1354 1352 169 12 16 chr1 205643439 205643681 -37020672 + AluJb SINE Alu 42 282 -30 6594 128 39 2 chr1 205643752 205644760 -37019593 + Ricksha DNA DNA 1889 2933 -313 892 161 0 0 chr1 205644772 205644909 -37019444 - AluJ SINE Alu -1 311 175 594 158 119 0 chr1 205644910 205645011 -37019342 - AluJ SINE Alu -198 114 2 1516 154 13 82 chr1 205645011 205645417 -37018936 + Ricksha DNA DNA 2921 3247 -13 1442 168 78 32 chr1 205645819 205646128 -37018225 - MER45B DNA AcHobo -3 1037 715 1474 264 82 78 chr1 205646206 205646739 -37017614 - MER45C DNA AcHobo -273 680 141 2160 104 0 14 chr1 205646739 205647052 -37017301 + AluSx SINE Alu 1 309 0 1474 264 82 78 chr1 205647052 205647187 -37017166 - MER45C DNA AcHobo -812 141 8 572 280 102 4 chr1 205647320 205647556 -37016797 - L2 LINE L2 -1 3312 3054 348 291 34 0 chr1 205648209 205648326 -37016027 - MIR SINE MIR -32 230 110 189 0 0 0 chr1 205649484 205649505 -37014848 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 297 0 0 0 chr1 205649671 205649704 -37014649 + (TG)n Simple_repeat Simple_repeat 2 34 0 1711 148 44 4 chr1 205649795 205650094 -37014259 + AluJb SINE Alu 1 310 0 2372 110 0 0 chr1 205650455 205650765 -37013588 + AluSx SINE Alu 1 310 -2 302 321 38 8 chr1 205650994 205651125 -37013228 + MIR SINE MIR 22 156 -106 453 246 176 0 chr1 205651998 205652140 -37012213 - MER5A DNA MER1_type -6 183 17 198 0 0 0 chr1 205653074 205653096 -37011257 + (T)n Simple_repeat Simple_repeat 1 22 0 2186 125 0 0 chr1 205653147 205653442 -37010911 + AluSx SINE Alu 1 295 -17 21 0 0 31 chr1 205654442 205654454 -37009899 + AT_rich Low_complexity Low_complexity 1 12 -19 2205 123 0 0 chr1 205654454 205654747 -37009606 - AluSx SINE Alu -19 293 1 21 0 0 31 chr1 205654747 205654766 -37009587 + AT_rich Low_complexity Low_complexity 12 31 0 197 231 19 19 chr1 205655147 205655199 -37009154 - MIR SINE MIR -75 133 82 377 294 98 57 chr1 205655998 205656416 -37007937 + L1ME LINE L1 4496 4930 -1216 284 156 0 0 chr1 205656427 205656472 -37007881 + AluJb SINE Alu 84 128 -174 204 111 0 0 chr1 205656473 205656509 -37007844 + (CA)n Simple_repeat Simple_repeat 1 36 0 986 157 39 11 chr1 205656511 205656835 -37007518 + AluJb SINE Alu 129 457 0 205 299 62 62 chr1 205656871 205657015 -37007338 + MIR SINE MIR 119 262 0 789 216 50 37 chr1 205657154 205657350 -37007003 + L1ME LINE L1 5579 5780 -341 1943 121 57 0 chr1 205657350 205657631 -37006722 + AluSx SINE Alu 1 297 -15 789 216 50 37 chr1 205657631 205657675 -37006678 + L1ME LINE L1 5780 5822 -299 2066 136 3 3 chr1 205657689 205657991 -37006362 + AluSx SINE Alu 1 302 -10 1664 148 32 84 chr1 205658211 205658522 -37005831 - AluJb SINE Alu -17 295 1 970 203 0 11 chr1 205658570 205658747 -37005606 + FRAM SINE Alu 1 40 0 1904 122 49 35 chr1 205658817 205659103 -37005250 - AluSx SINE Alu -22 290 1 384 322 98 11 chr1 205660180 205660363 -37003990 - MIR SINE MIR -4 258 60 897 133 0 0 chr1 205661353 205661473 -37002880 + FLAM_C SINE Alu 3 122 -21 232 308 143 0 chr1 205661512 205661603 -37002750 + MIR SINE MIR 159 262 0 873 157 54 0 chr1 205661661 205661827 -37002526 + MER57A LTR ERV1 229 403 0 200 283 33 0 chr1 205661871 205661931 -37002422 - L2 LINE L2 -226 3046 2985 3406 115 18 33 chr1 205662011 205662393 -37001960 + L1MA9 LINE L1 5743 6115 -197 2447 79 0 0 chr1 205662393 205662683 -37001670 - AluSc SINE Alu -19 290 1 3406 115 18 33 chr1 205662683 205662873 -37001480 + L1MA9 LINE L1 6115 6306 -6 377 286 169 19 chr1 205663251 205663405 -37000948 - MIR SINE MIR -70 192 16 2365 112 0 0 chr1 205664083 205664388 -36999965 + AluSg SINE Alu 1 305 -5 632 131 30 0 chr1 205664409 205664508 -36999845 + AluJo SINE Alu 12 113 -199 1068 135 161 17 chr1 205664508 205664738 -36999615 + MER21A LTR ERV1 2 264 -667 2934 145 44 29 chr1 205664740 205665284 -36999069 + MER21A LTR ERV1 372 923 -8 1055 170 39 0 chr1 205665291 205665473 -36998880 + AluJo SINE Alu 107 295 -17 2322 126 0 0 chr1 205665477 205665787 -36998566 + AluSx SINE Alu 1 310 -2 942 209 11 0 chr1 205665897 205666079 -36998274 - MER58A DNA MER1_type 0 224 41 342 253 23 11 chr1 205666196 205666283 -36998070 - MLT1J2 LTR MaLR -358 92 5 2295 92 10 3 chr1 205666436 205666739 -36997614 - AluSg SINE Alu -5 305 1 831 150 8 0 chr1 205667059 205667186 -36997167 - FLAM_A SINE Alu -5 128 1 295 159 32 32 chr1 205667188 205667251 -36997102 - L1M3 LINE L1 -396 5787 5725 2277 123 7 0 chr1 205667831 205668140 -36996213 + AluSq SINE Alu 1 311 -2 302 247 71 0 chr1 205668357 205668442 -36995911 + MIR SINE MIR 77 167 -95 1105 177 26 47 chr1 205668611 205668843 -36995510 - AluJo SINE Alu -16 296 70 390 229 59 54 chr1 205669075 205669216 -36995137 - MIR SINE MIR -64 144 3 281 266 191 0 chr1 205669631 205669725 -36994628 + L2 LINE L2 3202 3313 0 266 295 167 45 chr1 205669910 205670066 -36994287 - MIR SINE MIR -29 233 59 1947 156 32 0 chr1 205671417 205671699 -36992654 - AluJb SINE Alu -21 291 1 224 29 0 29 chr1 205673462 205673496 -36990857 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1985 130 39 0 chr1 205673496 205673770 -36990583 - AluSx SINE Alu -24 288 1 1489 93 62 12 chr1 205673781 205674039 -36990314 - L1MA2 LINE L1 0 6304 6034 915 163 49 22 chr1 205674579 205674763 -36989590 - MER53 DNA DNA 0 189 1 464 305 0 8 chr1 205675059 205675177 -36989176 - L2 LINE L2 0 3272 3156 2332 100 3 10 chr1 205675518 205675828 -36988525 + AluSg SINE Alu 1 308 -2 608 272 44 66 chr1 205675942 205676170 -36988183 - MIR SINE MIR -33 229 7 824 145 23 76 chr1 205676421 205676432 -36987921 + MER5A DNA MER1_type 3 4 -185 362 192 88 115 chr1 205676432 205676614 -36987739 - MER5A DNA MER1_type -1 188 12 184 328 62 0 chr1 205676698 205676762 -36987591 + L2 LINE L2 3246 3313 0 2711 21 3 12 chr1 205676990 205677349 -36987004 - L1PA3 LINE L1 0 6155 5829 3345 18 2 0 chr1 205677349 205677746 -36986607 - L1PA3 LINE L1 -200 5955 5558 389 159 0 0 chr1 205677845 205677908 -36986445 + MER63 DNA MER1_type 675 737 -325 303 175 0 18 chr1 205678024 205678081 -36986272 + L1MC4 LINE L1 6648 6703 -1339 1023 227 52 4 chr1 205678397 205678626 -36985727 - MIR SINE MIR 0 262 23 2138 63 52 0 chr1 205678627 205678930 -36985423 - AluY SINE Alu 0 317 1 589 260 160 33 chr1 205679307 205679669 -36984684 - HAL1 LINE L1 -1132 1375 968 528 174 84 108 chr1 205680555 205680654 -36983699 - AluJo/FRAM SINE Alu -17 295 200 2453 100 0 0 chr1 205680654 205680965 -36983388 + AluSq SINE Alu 1 311 -2 528 174 84 108 chr1 205680965 205681032 -36983321 - AluJo/FRAM SINE Alu -112 200 133 264 346 115 0 chr1 205681032 205681136 -36983217 - L2 LINE L2 -14 3258 3143 305 262 8 24 chr1 205683168 205683422 -36980931 + (TG)n Simple_repeat Simple_repeat 1 249 0 592 289 17 12 chr1 205684259 205684432 -36979921 + MIR SINE MIR 13 186 -76 232 314 223 25 chr1 205684726 205684847 -36979506 + MIR SINE MIR 11 155 -107 911 189 10 35 chr1 205684865 205684900 -36979453 - MER3 DNA MER1_type -4 205 171 2277 105 0 0 chr1 205684900 205685210 -36979143 - AluSq SINE Alu 0 310 1 911 189 10 35 chr1 205685210 205685374 -36978979 - MER3 DNA MER1_type -38 171 10 231 269 0 15 chr1 205685383 205685450 -36978903 + MIR SINE MIR 162 227 -35 363 228 66 74 chr1 205685585 205685755 -36978598 - MIR3 SINE MIR -53 155 7 218 289 8 99 chr1 205685777 205685855 -36978498 + MER5A DNA MER1_type 55 121 -68 1603 164 17 24 chr1 205685855 205686170 -36978183 - AluJo SINE Alu 0 313 1 218 289 8 99 chr1 205686170 205686211 -36978142 + MER5A DNA MER1_type 121 164 -25 508 216 101 54 chr1 205687384 205687532 -36976821 - L2 LINE L2 0 3313 3159 432 0 0 0 chr1 205687538 205687586 -36976767 + (TA)n Simple_repeat Simple_repeat 1 48 0 192 256 122 0 chr1 205687591 205687681 -36976672 - L2 LINE L2 -134 3179 3079 703 108 142 33 chr1 205687695 205687815 -36976538 - FLAM_C SINE Alu 0 133 1 2332 121 0 0 chr1 205687964 205688271 -36976082 + AluSx SINE Alu 3 309 -3 271 193 0 0 chr1 205688859 205688919 -36975434 + MIR SINE MIR 96 156 -52 2430 88 0 3 chr1 205688937 205689243 -36975110 + AluSq SINE Alu 1 305 -8 464 319 44 6 chr1 205689300 205689460 -36974893 + MIR SINE MIR 89 254 -8 1346 128 0 0 chr1 205689653 205689832 -36974521 + AluJb SINE Alu 130 308 -4 394 256 11 0 chr1 205690835 205690925 -36973428 + MIR SINE MIR 54 144 -64 1449 152 0 5 chr1 205690933 205691157 -36973196 + AluJo SINE Alu 87 309 -3 576 237 208 19 chr1 205692517 205692724 -36971629 + MIR SINE MIR 17 262 0 2118 122 0 10 chr1 205692905 205693199 -36971154 - AluSx SINE Alu -21 291 1 21 36 0 0 chr1 205693205 205693233 -36971120 + AT_rich Low_complexity Low_complexity 1 28 0 313 267 28 57 chr1 205694125 205694301 -36970052 - MLT1K LTR MaLR -7 581 411 585 105 0 0 chr1 205694415 205694501 -36969852 + (TA)n Simple_repeat Simple_repeat 2 87 0 2318 99 0 10 chr1 205694501 205694804 -36969549 - AluSx SINE Alu -12 300 1 205 321 84 94 chr1 205695332 205695575 -36968778 - L2 LINE L2 -530 2784 2545 2229 115 13 13 chr1 205695575 205695887 -36968466 + AluSq SINE Alu 1 312 -1 205 321 84 94 chr1 205695887 205696014 -36968339 - L2 LINE L2 -769 2545 2418 279 71 0 0 chr1 205696298 205696340 -36968013 + (TC)n Simple_repeat Simple_repeat 1 42 0 181 161 304 0 chr1 205696654 205696710 -36967643 + L3 LINE CR1 1430 1502 -75 208 286 75 88 chr1 205696749 205696976 -36967377 - L2 LINE L2 -1108 2206 1983 282 293 20 10 chr1 205696986 205697085 -36967268 - MLT1L LTR MaLR -106 509 410 503 327 161 9 chr1 205697669 205697993 -36966360 + L2 LINE L2 2896 3268 -4 2247 139 0 0 chr1 205699258 205699561 -36964792 + AluJb SINE Alu 1 303 -9 512 222 52 98 chr1 205700145 205700339 -36964014 - MIR SINE MIR -1 261 77 704 216 24 12 chr1 205700364 205700531 -36963822 + MER69A DNA AcHobo 1 169 -8 185 65 129 0 chr1 205700644 205700675 -36963678 + L2 LINE L2 3274 3308 -5 2139 106 11 0 chr1 205701575 205701888 -36962465 + AluSp SINE Alu 1 316 0 1120 267 82 20 chr1 205701996 205702400 -36961953 + LTR16A LTR ERVL 16 444 -6 348 167 194 0 chr1 205702400 205702472 -36961881 + L1M LINE L1 5256 5341 -2467 21 0 0 0 chr1 205703267 205703288 -36961065 + AT_rich Low_complexity Low_complexity 1 21 0 251 321 179 0 chr1 205703492 205703598 -36960755 - MER5B DNA MER1_type 0 178 54 417 309 44 22 chr1 205703616 205703752 -36960601 - MIR SINE MIR -71 137 9 2433 103 0 0 chr1 205703931 205704241 -36960112 - AluY SINE Alu -1 310 1 2440 88 13 0 chr1 205704534 205704842 -36959511 + AluSx SINE Alu 1 312 0 245 337 45 11 chr1 205705309 205705398 -36958955 - MIR3 SINE MIR 0 208 117 1122 176 5 41 chr1 205705848 205706069 -36958284 - AluJb SINE Alu -14 298 86 225 317 89 33 chr1 205706072 205706252 -36958101 + L3b LINE CR1 1394 1583 0 2448 99 3 0 chr1 205706705 205707009 -36957344 - AluSx SINE Alu -7 305 1 361 138 92 0 chr1 205707047 205707112 -36957241 + AluS SINE Alu 221 291 -10 397 255 9 0 chr1 205707120 205707236 -36957117 - L1MC4 LINE L1 -1339 6983 1995 325 276 0 82 chr1 205707236 205707334 -36957019 + L1MC4 LINE L1 6614 6703 -1339 * 369 284 23 0 chr1 205707248 205707336 -36957017 - L1MC4 LINE L1 -1339 6703 6614 2176 125 0 19 chr1 205707698 205707871 -36956482 - AluSx SINE Alu -6 306 140 2441 95 0 0 chr1 205707871 205708176 -36956177 - AluSg SINE Alu -5 305 1 2176 125 0 19 chr1 205708176 205708314 -36956039 - AluSx SINE Alu -172 140 1 183 80 0 0 chr1 205708359 205708384 -36955969 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 627 114 0 57 chr1 205708487 205708610 -36955743 - L1MC5 LINE L1 -123 7838 7723 2221 100 7 0 chr1 205708679 205708960 -36955393 + AluSx SINE Alu 1 283 -29 727 114 19 0 chr1 205708855 205708960 -36955393 + AluSg/x SINE Alu 175 301 0 181 0 0 0 chr1 205708960 205708980 -36955373 + (CAA)n Simple_repeat Simple_repeat 2 180 0 282 323 41 46 chr1 205709594 205709789 -36954564 + MIR3 SINE MIR 10 203 -5 523 144 136 72 chr1 205709807 205709932 -36954421 + FLAM_C SINE Alu 1 133 0 696 229 70 45 chr1 205710065 205710154 -36954199 - MIR SINE MIR -8 254 169 2162 101 3 17 chr1 205710154 205710462 -36953891 + AluSp SINE Alu 1 304 0 696 229 70 45 chr1 205710462 205710615 -36953738 - MIR SINE MIR -93 169 5 2076 226 70 112 chr1 205710716 205711332 -36953021 + L1MC4 LINE L1 6945 7585 -457 1898 133 23 27 chr1 205711332 205711633 -36952720 + AluSx SINE Alu 1 300 -12 2076 226 70 112 chr1 205711633 205711879 -36952474 + L1MC4 LINE L1 7585 7803 -239 260 234 0 0 chr1 205711879 205711926 -36952427 - MER66B LTR ERV1 -142 344 298 2076 226 70 112 chr1 205711926 205712098 -36952255 + L1MC4 LINE L1 7803 7981 -61 1199 178 146 0 chr1 205712258 205712511 -36951842 - AluJb SINE Alu -12 290 1 200 217 83 17 chr1 205713027 205713087 -36951266 - L2 LINE L2 -50 3263 3200 249 146 0 0 chr1 205713222 205713270 -36951083 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 2333 114 0 0 chr1 205713287 205713586 -36950767 - AluSx SINE Alu -13 299 1 1496 231 146 14 chr1 205713737 205714182 -36950171 - MLT1D LTR MaLR -1 504 1 519 234 73 7 chr1 205714182 205714319 -36950034 - MIR SINE MIR -21 241 96 31 0 0 0 chr1 205715488 205715519 -36948834 + AT_rich Low_complexity Low_complexity 1 31 0 1333 79 0 0 chr1 205715524 205715689 -36948664 + AluSg/x SINE Alu 124 288 -22 2305 119 0 0 chr1 205715769 205716072 -36948281 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr1 205716099 205716121 -36948232 + AT_rich Low_complexity Low_complexity 1 22 0 493 264 164 0 chr1 205716177 205716336 -36948017 + MER5A DNA MER1_type 5 189 0 2204 101 0 3 chr1 205716730 205717028 -36947325 + AluSx SINE Alu 1 297 -15 219 320 23 0 chr1 205717045 205717145 -36947208 + MIR SINE MIR 63 165 -43 903 106 0 8 chr1 205717425 205717548 -36946805 + AluSq/x SINE Alu 4 125 -187 850 301 44 44 chr1 205717588 205717950 -36946403 - L2 LINE L2 0 3272 2911 295 163 0 0 chr1 205718649 205718718 -36945635 - MIR SINE MIR -58 150 81 2418 94 0 0 chr1 205719166 205719474 -36944879 - AluSq SINE Alu -5 308 1 596 239 56 28 chr1 205721761 205721941 -36942412 - MIR3 SINE MIR -1 207 23 21 0 0 0 chr1 205722230 205722251 -36942102 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 205723046 205723067 -36941286 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 205729560 205729584 -36934769 + AT_rich Low_complexity Low_complexity 1 24 0 847 134 0 67 chr1 205730964 205731113 -36933240 + AluJb SINE Alu 3 141 -171 1873 164 0 10 chr1 205731113 205731411 -36932942 + AluSx SINE Alu 1 295 -17 436 252 9 19 chr1 205731675 205731782 -36932571 + HsTC2 DNA Tc2 1 106 -1792 1953 106 7 4 chr1 205732056 205732331 -36932022 - AluSx SINE Alu -36 276 1 1220 140 0 47 chr1 205732580 205732794 -36931559 - AluJb SINE Alu -7 305 102 296 256 263 12 chr1 205732822 205732982 -36931371 - MIR SINE MIR -15 247 48 1058 147 6 0 chr1 205733168 205733324 -36931029 + AluSg/x SINE Alu 123 279 -31 22 0 0 0 chr1 205733360 205733382 -36930971 + AT_rich Low_complexity Low_complexity 1 22 0 281 255 131 65 chr1 205733718 205733871 -36930482 - MER20B DNA MER1_type -603 180 18 597 170 0 0 chr1 205734310 205734404 -36929949 + AluJ/FLAM SINE Alu 2 95 -217 803 183 30 18 chr1 205734434 205734603 -36929750 + MLT1D LTR MaLR 335 505 0 21 0 0 0 chr1 205734624 205734645 -36929708 + AT_rich Low_complexity Low_complexity 1 21 0 1834 134 3 17 chr1 205734693 205735002 -36929351 - AluJb SINE Alu 0 312 9 258 294 111 8 chr1 205735422 205735548 -36928805 + MIR SINE MIR 53 191 -71 273 254 118 0 chr1 205735592 205735702 -36928651 - MIR SINE MIR -3 259 137 2375 100 3 3 chr1 205735711 205736021 -36928332 - AluSp SINE Alu -3 310 1 2268 100 3 25 chr1 205736031 205736351 -36928002 - AluSq SINE Alu 0 313 1 379 221 107 16 chr1 205736378 205736500 -36927853 - MIR SINE MIR -109 153 21 937 188 62 5 chr1 205736602 205736810 -36927543 + MIR SINE MIR 33 252 -10 187 100 25 25 chr1 205736856 205736896 -36927457 + (TTCTC)n Simple_repeat Simple_repeat 3 42 0 275 324 67 33 chr1 205737149 205737359 -36926994 + L3 LINE CR1 1354 1570 -7 437 248 73 7 chr1 205737383 205737520 -36926833 + MIR3 SINE MIR 9 154 -54 262 329 13 0 chr1 205737956 205738032 -36926321 + CT-rich Low_complexity Low_complexity 4 80 0 25 0 0 0 chr1 205738032 205738057 -36926296 + AT_rich Low_complexity Low_complexity 1 25 0 837 144 0 8 chr1 205738057 205738182 -36926171 - FLAM_C SINE Alu -9 124 1 268 304 206 0 chr1 205738194 205738286 -36926067 - L2 LINE L2 -15 3257 3147 1801 105 132 0 chr1 205738863 205739129 -36925224 - AluSx SINE Alu -11 301 1 222 171 0 0 chr1 205739180 205739221 -36925132 + (TA)n Simple_repeat Simple_repeat 2 42 0 1927 143 0 27 chr1 205739424 205739718 -36924635 + AluJb SINE Alu 1 286 -26 222 37 0 0 chr1 205739732 205739759 -36924594 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 356 301 182 0 chr1 205740060 205740263 -36924090 + MIR SINE MIR 14 253 -9 1168 241 30 57 chr1 205740560 205740966 -36923387 - L2 LINE L2 0 3313 2919 254 358 32 0 chr1 205741445 205741540 -36922813 + MIR SINE MIR 13 110 -152 1893 163 3 6 chr1 205741951 205742264 -36922089 - AluSx SINE Alu 0 312 1 1097 125 18 65 chr1 205742435 205742588 -36921765 - L1M3 LINE L1 -709 5471 5334 1536 167 55 11 chr1 205742588 205742863 -36921490 - AluJb SINE Alu -25 287 1 1097 125 18 65 chr1 205742863 205743013 -36921340 - L1M3 LINE L1 -846 5334 5179 780 235 20 5 chr1 205743013 205743209 -36921144 - MLT1A1 LTR MaLR 0 365 167 2432 95 0 0 chr1 205743466 205743772 -36920581 - AluSx SINE Alu -6 306 1 659 177 121 7 chr1 205743772 205743913 -36920440 - MLT1A1 LTR MaLR -208 157 1 1435 165 30 23 chr1 205743913 205744216 -36920137 - L1M3 LINE L1 -963 5183 4879 841 137 6 56 chr1 205744218 205744379 -36919974 + MLT1B LTR MaLR 1 153 -237 767 171 22 99 chr1 205744370 205744478 -36919875 + MLT1B LTR MaLR 67 151 -239 * 891 144 0 0 chr1 205744478 205744610 -36919743 + FLAM_C SINE Alu 2 133 0 767 171 22 99 chr1 205744610 205744723 -36919630 + MLT1B LTR MaLR 151 271 -119 2158 128 0 0 chr1 205744748 205745045 -36919308 + AluSx SINE Alu 1 297 -15 300 159 91 45 chr1 205745203 205745291 -36919062 + L1MC4 LINE L1 6615 6706 -1336 1929 104 28 80 chr1 205745301 205745627 -36918726 - AluSx SINE Alu -3 309 1 229 125 0 0 chr1 205745709 205745741 -36918612 - L1P LINE L1 -4255 1891 1860 2243 112 0 3 chr1 205745799 205746094 -36918259 + AluSx SINE Alu 1 294 -18 634 145 122 15 chr1 205746094 205746216 -36918137 - FAM SINE Alu -150 35 1 254 264 83 28 chr1 205746228 205746372 -36917981 - HAL1 LINE L1 -970 1537 1386 2091 194 47 70 chr1 205746628 205746915 -36917438 + L1ME1 LINE L1 5010 5302 -864 1775 155 17 24 chr1 205746915 205747212 -36917141 - AluJo SINE Alu -17 295 1 2091 194 47 70 chr1 205747212 205747338 -36917015 + L1ME1 LINE L1 5302 5429 -737 1510 172 0 80 chr1 205747338 205747640 -36916713 - AluJo SINE Alu -34 278 1 2091 194 47 70 chr1 205747640 205748005 -36916348 + L1ME1 LINE L1 5429 5777 -389 747 142 33 8 chr1 205748044 205748164 -36916189 - AluJb SINE Alu -188 124 2 1510 201 68 6 chr1 205748182 205748536 -36915817 + L1ME1 LINE L1 5786 6161 -5 1401 152 0 5 chr1 205749102 205749312 -36915041 - AluJb SINE Alu -19 293 85 330 340 25 19 chr1 205749424 205749446 -36914907 - MIR SINE MIR -56 206 186 9315 95 15 5 chr1 205749446 205750716 -36913637 - HSMAR1 DNA Mariner -2 1285 3 330 340 25 19 chr1 205750716 205750852 -36913501 - MIR SINE MIR -76 186 47 2658 255 179 28 chr1 205752555 205753486 -36910867 - L2 LINE L2 -5 3308 2518 2218 124 0 0 chr1 205753486 205753784 -36910569 - AluSx SINE Alu -14 298 1 2658 255 179 28 chr1 205753784 205754405 -36909948 - L2 LINE L2 -795 2518 1534 2103 128 0 0 chr1 205754430 205754719 -36909634 + AluJb SINE Alu 1 289 -23 2110 132 0 0 chr1 205754741 205755030 -36909323 - AluSx SINE Alu -23 289 1 1016 140 13 0 chr1 205755053 205755203 -36909150 - AluSg/x SINE Alu -24 288 137 1860 128 64 0 chr1 205755264 205755529 -36908824 + AluSx SINE Alu 1 282 -30 1051 243 111 0 chr1 205755539 205755889 -36908464 - L2 LINE L2 -2167 1147 759 390 174 122 0 chr1 205755895 205755993 -36908360 + FRAM SINE Alu 47 156 -10 247 256 23 58 chr1 205756320 205756406 -36907947 + L2 LINE L2 3187 3269 -3 1918 158 10 0 chr1 205756576 205756874 -36907479 + AluJo SINE Alu 1 301 -11 23 33 0 0 chr1 205756981 205757011 -36907342 + AT_rich Low_complexity Low_complexity 1 30 0 2008 141 3 3 chr1 205757245 205757542 -36906811 + AluJb SINE Alu 1 297 -15 180 245 82 0 chr1 205758185 205758234 -36906119 + L2 LINE L2 3237 3289 -24 458 284 60 11 chr1 205758289 205758472 -36905881 - MIR SINE MIR -40 222 31 189 0 0 0 chr1 205758499 205758520 -36905833 + (TG)n Simple_repeat Simple_repeat 1 21 0 232 132 38 0 chr1 205758838 205758891 -36905462 + T-rich Low_complexity Low_complexity 2 56 0 569 204 216 72 chr1 205759068 205759513 -36904840 - L2 LINE L2 -1 3312 2804 2292 106 25 41 chr1 205759675 205760042 -36904311 + THE1B LTR MaLR 1 361 -3 2499 90 3 0 chr1 205760045 205760355 -36903998 + AluSp SINE Alu 1 311 -2 691 276 214 3 chr1 205760422 205760730 -36903623 - L2 LINE L2 -981 2333 1961 208 197 123 123 chr1 205760769 205760801 -36903552 + MIR SINE MIR 124 155 -107 1992 132 0 3 chr1 205760801 205761096 -36903257 + AluSx SINE Alu 3 296 -16 208 197 123 123 chr1 205761096 205761185 -36903168 + MIR SINE MIR 154 245 -17 212 262 41 66 chr1 205761700 205761822 -36902531 + L2 LINE L2 3060 3178 -94 1956 115 14 3 chr1 205762781 205763068 -36901285 - AluSx SINE Alu -2 310 21 207 254 0 0 chr1 205763475 205763534 -36900819 + (TG)n Simple_repeat Simple_repeat 1 59 0 1882 129 20 3 chr1 205763620 205763915 -36900438 + AluSq SINE Alu 1 300 -13 775 157 0 22 chr1 205764454 205764588 -36899765 - AluJo SINE Alu -176 136 6 356 293 155 0 chr1 205764605 205764721 -36899632 - L2 LINE L2 -5 3267 3134 2194 94 0 7 chr1 205764735 205765033 -36899320 + AluSq SINE Alu 1 296 -17 353 161 48 0 chr1 205765071 205765133 -36899220 - MIR SINE MIR -2 260 196 1795 162 3 7 chr1 205765428 205765731 -36898622 + AluJo SINE Alu 9 310 -2 531 82 0 0 chr1 205765731 205765804 -36898549 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 427 196 98 56 chr1 205766086 205766229 -36898124 - MER115 DNA AcHobo -252 441 293 474 146 45 0 chr1 205766239 205766328 -36898025 + MER53 DNA DNA 97 189 0 623 278 72 0 chr1 205766369 205766578 -36897775 - MER115 DNA AcHobo -451 242 19 1830 174 0 0 chr1 205766674 205766984 -36897369 - AluJb SINE Alu -1 311 2 481 109 18 118 chr1 205767062 205767125 -36897228 - MER53 DNA DNA 0 189 121 2247 94 3 0 chr1 205767125 205767424 -36896929 - AluSq SINE Alu -13 300 1 2367 53 0 13 chr1 205767424 205767727 -36896626 - AluY SINE Alu -12 299 1 1973 136 0 3 chr1 205767727 205768022 -36896331 - AluSg SINE Alu -16 294 1 481 109 18 118 chr1 205768022 205768066 -36896287 - MER53 DNA DNA -65 124 91 1320 195 152 13 chr1 205768070 205768373 -36895980 - MER2 DNA MER2_type 0 345 1 357 148 0 119 chr1 205768373 205768467 -36895886 - MER53 DNA DNA -107 82 1 198 299 196 10 chr1 205768472 205768569 -36895784 + MIR SINE MIR 21 135 -127 268 215 398 0 chr1 205768898 205768991 -36895362 - MIR SINE MIR -7 255 126 442 249 151 84 chr1 205769021 205769366 -36894987 + L2 LINE L2 2945 3312 -1 280 268 58 24 chr1 205769381 205769577 -36894776 - MIR3 SINE MIR 0 262 14 219 333 125 14 chr1 205769643 205769787 -36894566 + L2 LINE L2 3087 3246 -26 189 280 93 0 chr1 205769825 205769900 -36894453 - MIR3 SINE MIR -24 184 103 279 301 115 18 chr1 205769902 205770015 -36894338 - L2 LINE L2 -1 3271 3148 222 37 0 0 chr1 205770587 205770614 -36893739 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 555 304 19 121 chr1 205770616 205771047 -36893306 - L2 LINE L2 -13 3259 2873 475 319 106 0 chr1 205771372 205771560 -36892793 - MIR SINE MIR -2 260 53 1576 177 17 23 chr1 205771802 205772002 -36892351 + AluJb SINE Alu 6 205 -107 1144 196 119 68 chr1 205772002 205772430 -36891923 + LTR7 LTR ERV1 1 450 0 1576 177 17 23 chr1 205772430 205772529 -36891824 + AluJb SINE Alu 205 303 -9 897 196 124 47 chr1 205776822 205777225 -36887128 + MER63D DNA MER1_type 1 434 -627 463 233 50 0 chr1 205777250 205777370 -36886983 + MER63D DNA MER1_type 935 1060 0 22 0 0 0 chr1 205777708 205777730 -36886623 + AT_rich Low_complexity Low_complexity 1 22 0 987 237 190 6 chr1 205778862 205779204 -36885149 + Charlie2 DNA MER1_type 104 508 -2354 422 217 40 101 chr1 205779198 205779417 -36884936 - MLT1H LTR MaLR -297 252 1 * 22 0 0 0 chr1 205780057 205780079 -36884274 + AT_rich Low_complexity Low_complexity 1 22 0 242 196 36 0 chr1 205780357 205780413 -36883940 + MIR SINE MIR 89 146 -116 2024 97 17 17 chr1 205780425 205780724 -36883629 - AluSg SINE Alu -10 300 2 219 114 0 0 chr1 205780813 205780848 -36883505 + (A)n Simple_repeat Simple_repeat 1 35 0 1591 142 53 21 chr1 205781072 205781354 -36882999 + AluJb SINE Alu 1 291 -21 1692 141 47 10 chr1 205781438 205781735 -36882618 - AluSg SINE Alu -2 308 1 450 236 0 0 chr1 205781737 205781826 -36882527 + L2 LINE L2 2564 2652 -662 1030 215 99 4 chr1 205782289 205782522 -36881831 + HAL1 LINE L1 587 841 -1666 618 261 22 105 chr1 205782532 205782846 -36881507 + MER34 LTR ERV1 73 360 -182 1599 141 50 25 chr1 205782846 205783129 -36881224 + AluJo SINE Alu 1 290 -22 225 94 0 0 chr1 205783129 205783161 -36881192 + (GGGGA)n Simple_repeat Simple_repeat 1 32 0 266 225 11 34 chr1 205783281 205783370 -36880983 + MER112 DNA MER1_type 133 219 -41 908 196 29 0 chr1 205783785 205783958 -36880395 - FRAM SINE Alu -1 175 1 29 60 0 0 chr1 205783991 205784041 -36880312 + AT_rich Low_complexity Low_complexity 1 50 0 2126 107 0 7 chr1 205784278 205784577 -36879776 + AluSg SINE Alu 1 297 -13 24 0 0 0 chr1 205784922 205784946 -36879407 + AT_rich Low_complexity Low_complexity 1 24 0 1139 185 19 0 chr1 205784981 205785186 -36879167 + MER3 DNA MER1_type 1 209 0 180 0 0 0 chr1 205785268 205785288 -36879065 + (TA)n Simple_repeat Simple_repeat 2 21 0 860 168 64 17 chr1 205785828 205786001 -36878352 - MSTB1 LTR MaLR -242 190 10 245 348 82 40 chr1 205786316 205786588 -36877765 + L2 LINE L2 2687 2969 -303 1023 229 94 83 chr1 205786624 205787104 -36877249 + MLT1K LTR MaLR 88 572 -16 223 276 144 63 chr1 205787120 205787294 -36877059 + L2 LINE L2 2970 3157 -115 2117 123 0 0 chr1 205787483 205787793 -36876560 + AluSx SINE Alu 1 310 -2 1861 137 0 7 chr1 205788868 205789145 -36875208 + AluSx SINE Alu 1 275 -37 603 137 20 0 chr1 205839146 205839248 -36825105 + AluY SINE Alu 205 308 -3 1394 156 19 55 chr1 205839482 205839661 -36824692 - AluJo SINE Alu 0 312 143 2420 68 7 3 chr1 205839661 205839956 -36824397 - AluY SINE Alu -15 296 1 1394 156 19 55 chr1 205839956 205840032 -36824321 - AluJo SINE Alu -169 143 66 668 253 177 6 chr1 205840507 205840852 -36823501 + L1ME3A LINE L1 5257 5660 -520 302 281 30 67 chr1 205840867 205841031 -36823322 - MER20B DNA MER1_type -625 158 1 739 210 161 5 chr1 205841045 205841231 -36823122 - MER20 DNA MER1_type -4 215 1 877 239 56 14 chr1 205841232 205841516 -36822837 + L1ME3A LINE L1 5650 5945 -225 2384 93 6 0 chr1 205841573 205841884 -36822469 + AluSq SINE Alu 1 313 0 227 224 0 0 chr1 205842002 205842051 -36822302 - AluSc SINE Alu -1 319 271 23 54 0 0 chr1 205842179 205842216 -36822137 + AT_rich Low_complexity Low_complexity 1 37 0 650 243 20 9 chr1 205842230 205842280 -36822073 + MLT1E1 LTR MaLR 13 61 -593 975 195 56 39 chr1 205842280 205842511 -36821842 + MER46A DNA MER2_type 1 235 -1 650 243 20 9 chr1 205842511 205842690 -36821663 + MLT1E1 LTR MaLR 61 263 -391 678 184 24 77 chr1 205842730 205842898 -36821455 + MLT1E1 LTR MaLR 405 563 -91 355 148 180 0 chr1 205842906 205842967 -36821386 - AluSc SINE Alu -7 292 221 7436 166 28 5 chr1 205843067 205845297 -36819056 + L1PA13 LINE L1 3883 6162 -1 210 167 0 0 chr1 205846193 205846229 -36818124 + A-rich Low_complexity Low_complexity 6 41 0 2234 96 41 3 chr1 205846522 205846814 -36817539 + AluSx SINE Alu 1 303 -9 1378 113 41 0 chr1 205847140 205847334 -36817019 - AluSg SINE Alu -108 202 1 207 340 72 21 chr1 205847807 205847904 -36816449 - L3b LINE CR1 -24 1559 1458 486 311 83 69 chr1 205847929 205848084 -36816269 - L3 LINE CR1 -13 1564 1413 2186 107 10 0 chr1 205848084 205848375 -36815978 - AluSq SINE Alu -19 294 1 486 311 83 69 chr1 205848375 205848845 -36815508 - L3 LINE CR1 -164 1413 930 356 289 7 54 chr1 205848861 205849010 -36815343 - L1ME4a LINE L1 -30 6091 5950 180 0 0 0 chr1 205849010 205849030 -36815323 + (TC)n Simple_repeat Simple_repeat 1 20 0 378 165 0 0 chr1 205849030 205849109 -36815244 + (CA)n Simple_repeat Simple_repeat 2 80 0 823 244 117 9 chr1 205849125 205849411 -36814942 + MLT1H1 LTR MaLR 1 349 -246 432 200 44 11 chr1 205849476 205849566 -36814787 + MLT1H1 LTR MaLR 463 555 0 572 242 171 52 chr1 205849592 205849803 -36814550 - MIR SINE MIR -22 240 5 195 291 107 70 chr1 205849909 205850022 -36814331 - L3 LINE CR1 -809 768 661 2337 108 3 0 chr1 205850022 205850319 -36814034 - AluSq SINE Alu -15 298 1 195 291 107 70 chr1 205850319 205850504 -36813849 - L3 LINE CR1 -916 661 459 * 450 284 25 19 chr1 205850501 205850663 -36813690 + MER5A DNA MER1_type 27 189 0 202 269 269 0 chr1 205850767 205850845 -36813508 + MIR3 SINE MIR 59 157 -51 727 267 98 25 chr1 205850964 205851249 -36813104 + LTR16A LTR ERVL 145 450 0 262 206 59 0 chr1 205851390 205851458 -36812895 - L2 LINE L2 -1 3271 3200 2284 116 0 0 chr1 205852162 205852456 -36811897 - AluSc SINE Alu -15 294 1 339 216 0 0 chr1 205852630 205852704 -36811649 - MIR3 SINE MIR -48 160 87 226 264 28 85 chr1 205852930 205853036 -36811317 + MIR SINE MIR 37 136 -72 194 315 0 0 chr1 205853213 205853267 -36811086 + MER5A DNA MER1_type 125 189 0 366 23 0 0 chr1 205853509 205853552 -36810801 + (CA)n Simple_repeat Simple_repeat 1 43 0 221 323 0 0 chr1 205853770 205853835 -36810518 + MIR SINE MIR 58 122 -86 363 272 62 103 chr1 205854020 205854244 -36810109 + MLT1K LTR MaLR 2 216 -372 1138 111 3 19 chr1 205854264 205854579 -36809774 + (GAAA)n Simple_repeat Simple_repeat 2 311 0 697 246 89 11 chr1 205855043 205855234 -36809119 + MLT2E LTR ERVL 423 628 0 2062 105 20 20 chr1 205855294 205855589 -36808764 - AluSq SINE Alu -18 295 1 201 242 0 30 chr1 205855593 205855659 -36808694 + CT-rich Low_complexity Low_complexity 2 65 0 233 29 0 29 chr1 205856105 205856140 -36808213 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 188 250 0 0 chr1 205856344 205856388 -36807965 - L3 LINE CR1 -3 1574 1531 2229 113 3 0 chr1 205856647 205856947 -36807406 + AluSg SINE Alu 1 301 -9 381 290 123 12 chr1 205857002 205857164 -36807189 - MIR SINE MIR -44 218 39 1586 174 0 68 chr1 205857247 205857557 -36806796 + AluJo SINE Alu 2 290 -22 336 24 0 0 chr1 205859323 205859364 -36804989 + (CA)n Simple_repeat Simple_repeat 2 42 0 1009 123 7 0 chr1 205859473 205859611 -36804742 - AluSq/x SINE Alu -174 139 1 571 261 144 20 chr1 205859618 205859917 -36804436 + L1MDa LINE L1 1562 1897 -4643 234 0 0 0 chr1 205860482 205860508 -36803845 + (A)n Simple_repeat Simple_repeat 1 26 0 498 214 104 0 chr1 205860508 205860662 -36803691 + L1MDa LINE L1 1860 2029 -4511 290 308 28 37 chr1 205861334 205861441 -36802912 + MER5B DNA MER1_type 2 107 -71 21 36 0 0 chr1 205861487 205861515 -36802838 + AT_rich Low_complexity Low_complexity 1 28 0 1570 174 41 4 chr1 205861785 205862055 -36802298 - AluJo SINE Alu -22 290 11 879 184 53 39 chr1 205862487 205862541 -36801812 - MER3 DNA MER1_type 0 209 157 2094 117 3 0 chr1 205862541 205862873 -36801480 + AluSq SINE Alu 1 333 0 879 184 53 39 chr1 205862873 205863023 -36801330 - MER3 DNA MER1_type -52 157 1 180 226 0 0 chr1 205863084 205863115 -36801238 - MIR SINE MIR -143 119 89 769 239 120 10 chr1 205863644 205863853 -36800500 - MIR SINE MIR -26 236 5 1419 112 45 5 chr1 205863853 205864077 -36800276 - Tigger7 DNA MER2_type 0 2491 2259 2068 107 34 3 chr1 205864518 205864809 -36799544 + AluSx SINE Alu 1 300 -12 373 276 49 57 chr1 205865127 205865250 -36799103 - MIR3 SINE MIR -50 158 37 247 250 36 107 chr1 205865323 205865463 -36798890 + MER91B DNA MER1_type 1 130 -60 2142 70 46 7 chr1 205866601 205866886 -36797467 - AluY SINE Alu -15 296 1 789 289 88 0 chr1 205867370 205867609 -36796744 - MIR SINE MIR 0 262 3 498 281 55 24 chr1 205869699 205869863 -36794490 + MLT1L LTR MaLR 430 598 -17 2017 134 23 0 chr1 205870373 205870672 -36793681 + AluSx SINE Alu 1 306 -6 184 296 37 0 chr1 205871532 205871586 -36792767 - MIR3 SINE MIR -3 205 150 2952 130 26 24 chr1 205871742 205872233 -36792120 - LTR22B LTR ERVK 0 492 1 2094 111 4 0 chr1 205872872 205873175 -36791178 - AluSg SINE Alu 0 306 3 248 366 150 31 chr1 205873176 205874344 -36790009 + L2 LINE L2 1898 3211 -61 2218 107 0 0 chr1 205874452 205874742 -36789611 - AluSq SINE Alu -23 290 1 570 289 119 2 chr1 205874745 205874975 -36789378 - MIR SINE MIR -6 256 1 181 289 205 0 chr1 205875082 205875165 -36789188 - L3b LINE CR1 -94 1489 1390 1197 200 130 39 chr1 205875366 205875461 -36788892 + MLT1A2 LTR MaLR 7 92 -282 2223 92 3 22 chr1 205875461 205875776 -36788577 - AluSg SINE Alu -1 309 1 1197 200 130 39 chr1 205875776 205876010 -36788343 + MLT1A2 LTR MaLR 92 366 -8 634 240 11 38 chr1 205876267 205876450 -36787903 - MER5B DNA MER1_type 0 178 1 558 184 125 26 chr1 205876527 205876679 -36787674 - MIR SINE MIR -28 234 68 21 0 0 0 chr1 205877189 205877210 -36787143 + AT_rich Low_complexity Low_complexity 1 21 0 329 280 131 79 chr1 205877229 205877558 -36786795 + L1ME3 LINE L1 5695 5947 -215 500 299 73 20 chr1 205879672 205879876 -36784477 + MIR SINE MIR 30 244 -18 282 380 66 26 chr1 205879989 205880215 -36784138 + L2 LINE L2 2847 3081 -232 1533 205 3 16 chr1 205880775 205881082 -36783271 - AluJb SINE Alu -9 303 1 24 32 0 0 chr1 205883381 205883412 -36780941 + AT_rich Low_complexity Low_complexity 1 31 0 280 271 21 71 chr1 205883592 205883732 -36780621 - MIR3 SINE MIR -3 205 73 515 200 40 156 chr1 205884054 205884304 -36780049 + L2 LINE L2 2479 2699 -615 279 265 39 10 chr1 205884506 205884608 -36779745 - L1ME3 LINE L1 -1 6161 6057 541 248 92 0 chr1 205884627 205884768 -36779585 + LTR33 LTR ERVL 67 220 -301 456 293 117 16 chr1 205884827 205885015 -36779338 + LTR33 LTR ERVL 315 521 0 335 237 187 14 chr1 205885288 205885427 -36778926 + MIR SINE MIR 1 163 -99 200 358 62 12 chr1 205885429 205885510 -36778843 + MER91C DNA MER1_type 25 109 -31 317 266 0 0 chr1 205885663 205885742 -36778611 - L2 LINE L2 -508 2806 2728 636 280 20 113 chr1 205885769 205885800 -36778553 + L2 LINE L2 2951 2983 -330 1252 175 26 111 chr1 205885800 205886178 -36778175 + MER7A DNA MER2_type 2 345 -1 636 280 20 113 chr1 205886178 205886543 -36777810 + L2 LINE L2 2983 3310 -3 270 341 68 0 chr1 205886986 205887074 -36777279 + L2 LINE L2 3173 3266 -6 25 31 0 0 chr1 205887174 205887206 -36777147 + AT_rich Low_complexity Low_complexity 1 32 0 458 279 101 58 chr1 205887208 205887466 -36776887 + MER102a DNA MER1_type 62 330 0 842 173 0 8 chr1 205887733 205887866 -36776487 + FRAM SINE Alu 1 132 -44 29 0 0 25 chr1 205888432 205888455 -36775898 + AT_rich Low_complexity Low_complexity 1 24 -15 8139 72 153 5 chr1 205888455 205889642 -36774711 + SVA Other Other 24 1386 0 29 0 0 25 chr1 205889642 205889658 -36774695 + AT_rich Low_complexity Low_complexity 24 39 0 754 223 128 72 chr1 205889724 205890209 -36774144 - L1ME4a LINE L1 -49 6072 5561 259 310 69 14 chr1 205891973 205892118 -36772235 - L1M4c LINE L1 -4648 1736 1584 320 223 82 98 chr1 205892402 205892586 -36771767 - L1ME4a LINE L1 -1 6120 5940 439 155 0 0 chr1 205892813 205892897 -36771456 + Alu SINE Alu 227 310 0 1925 159 3 0 chr1 205893711 205894013 -36770340 + AluJb SINE Alu 1 303 -9 1166 146 83 12 chr1 205894040 205894293 -36770060 + L1MC3 LINE L1 7494 7764 -21 2352 94 0 0 chr1 205895110 205895409 -36768944 + AluSx SINE Alu 1 299 -13 705 286 158 42 chr1 205895418 205896065 -36768288 + L1MC4a LINE L1 5320 6041 -1767 409 260 20 0 chr1 205896869 205896969 -36767384 + MIR SINE MIR 56 157 -105 31 26 0 0 chr1 205897917 205897955 -36766398 + AT_rich Low_complexity Low_complexity 1 38 0 1172 191 4 22 chr1 205898090 205898315 -36766038 + AluJo SINE Alu 87 307 -5 2241 109 0 3 chr1 205899004 205899306 -36765047 + AluSx SINE Alu 1 301 -11 195 267 0 0 chr1 205899682 205899757 -36764596 + GA-rich Low_complexity Low_complexity 3 77 0 1992 135 0 32 chr1 205900026 205900338 -36764015 - AluSx SINE Alu -8 304 3 217 250 11 33 chr1 205900358 205900450 -36763903 + A-rich Low_complexity Low_complexity 2 91 0 24 0 0 0 chr1 205900550 205900574 -36763779 + AT_rich Low_complexity Low_complexity 1 24 0 1603 199 46 11 chr1 205901253 205901604 -36762749 + MLT1A1 LTR MaLR 1 363 -2 1974 153 3 0 chr1 205901748 205902056 -36762297 + AluSq SINE Alu 1 309 -4 369 198 69 0 chr1 205902243 205902344 -36762009 + L1ME1 LINE L1 4363 4470 -1676 1167 207 9 5 chr1 205902351 205902573 -36761780 + AluJo SINE Alu 1 223 -89 24 0 0 0 chr1 205902674 205902698 -36761655 + AT_rich Low_complexity Low_complexity 1 24 0 959 104 0 0 chr1 205902708 205902852 -36761501 + L1PB1 LINE L1 6008 6151 0 666 161 25 145 chr1 205902856 205902911 -36761442 + L1ME1 LINE L1 4463 4523 -1623 1468 177 87 7 chr1 205902911 205903199 -36761154 + AluJb SINE Alu 1 311 -1 666 161 25 145 chr1 205903199 205903245 -36761108 + L1ME1 LINE L1 4523 4573 -1573 2122 131 0 0 chr1 205903245 205903542 -36760811 + AluSx SINE Alu 1 297 -15 666 161 25 145 chr1 205903542 205903681 -36760672 + L1ME1 LINE L1 4573 4675 -1471 1038 223 0 48 chr1 205903681 205903910 -36760443 - AluJo SINE Alu -90 222 5 3648 194 121 11 chr1 205903920 205905271 -36759082 + L1ME1 LINE L1 4683 6333 -1 2277 115 0 3 chr1 205905470 205905783 -36758570 + AluSx SINE Alu 1 312 0 523 276 188 41 chr1 205906036 205906418 -36757935 + L2 LINE L2 1341 1780 -1529 1991 94 63 3 chr1 205906418 205906704 -36757649 - AluSp SINE Alu -10 303 1 358 212 0 0 chr1 205906730 205906796 -36757557 - MER2 DNA MER2_type 0 345 280 332 108 62 0 chr1 205906831 205906896 -36757457 - MER2 DNA MER2_type -135 210 142 248 139 0 0 chr1 205906902 205906938 -36757415 - MER2 DNA MER2_type -304 41 6 2447 273 162 14 chr1 205906943 205908138 -36756215 + L2 LINE L2 1794 3149 -164 271 288 41 14 chr1 205908143 205908216 -36756137 + L1ME LINE L1 682 756 -5449 651 288 136 39 chr1 205908305 205909419 -36754934 + L1ME LINE L1 1087 2338 -4058 1905 143 17 17 chr1 205909419 205909712 -36754641 + AluSx SINE Alu 3 295 -17 651 288 136 39 chr1 205909712 205909857 -36754496 + L1ME LINE L1 2338 2468 -3928 615 202 113 6 chr1 205909871 205910039 -36754314 + L1ME LINE L1 4552 4737 -1478 355 267 17 11 chr1 205910068 205910204 -36754149 + L1ME LINE L1 5366 5500 -731 25 0 0 0 chr1 205910498 205910523 -36753830 + AT_rich Low_complexity Low_complexity 1 25 0 491 183 9 17 chr1 205911191 205911306 -36753047 + L1ME1 LINE L1 2795 2908 -3307 1382 229 0 14 chr1 205911313 205911597 -36752756 + AluJb SINE Alu 11 290 -22 570 216 130 0 chr1 205911616 205911778 -36752575 + L1ME1 LINE L1 2948 3130 -3085 * 1889 213 53 12 chr1 205911773 205912480 -36751873 + L1ME1 LINE L1 4927 5658 -577 6170 184 48 6 chr1 205912484 205914173 -36750180 - L1PA16 LINE L1 -1 6165 4400 1401 164 40 11 chr1 205914173 205914447 -36749906 + L1ME1 LINE L1 5644 5925 -310 1351 175 126 29 chr1 205914871 205915184 -36749169 + L1ME1 LINE L1 5892 6230 -5 24 0 0 0 chr1 205915188 205915212 -36749141 + AT_rich Low_complexity Low_complexity 1 24 0 2044 118 37 0 chr1 205915591 205915888 -36748465 + AluSx SINE Alu 1 308 -4 272 308 60 17 chr1 205917400 205917517 -36746836 + MER5B DNA MER1_type 2 123 -55 2185 116 7 0 chr1 205917551 205917844 -36746509 - AluSx SINE Alu -17 295 1 318 267 99 15 chr1 205917939 205918070 -36746283 + Charlie8 DNA MER1_type 28 169 -2248 845 244 57 13 chr1 205918502 205918731 -36745622 - MIR SINE MIR -17 245 7 934 249 147 59 chr1 205918921 205919431 -36744922 - LTR67 LTR ERVL -1 556 2 2199 123 0 0 chr1 205920054 205920356 -36743997 - AluSq SINE Alu -11 302 1 237 232 125 18 chr1 205920441 205920497 -36743856 - MLT1K LTR MaLR -347 241 180 329 253 11 11 chr1 205921567 205921654 -36742699 + L2 LINE L2 3186 3272 0 1937 245 122 29 chr1 205921915 205922416 -36741937 + L2 LINE L2 2279 2732 -581 2367 80 7 10 chr1 205922416 205922715 -36741638 - AluY SINE Alu -13 298 1 1937 245 122 29 chr1 205922715 205923041 -36741312 + L2 LINE L2 2732 3255 -58 2486 57 3 3 chr1 205923736 205924037 -36740316 + AluSq SINE Alu 1 301 -12 293 321 28 0 chr1 205927028 205927137 -36737216 + MIR SINE MIR 1 112 -150 4860 161 35 4 chr1 205927404 205928242 -36736111 - MER6 DNA MER2_type -1 864 1 241 287 122 21 chr1 205928303 205928491 -36735862 + L2 LINE L2 2323 2529 -785 2194 194 74 19 chr1 205928667 205929250 -36735103 - Charlie2 DNA MER1_type -30 2832 2218 402 245 76 76 chr1 205929319 205929502 -36734851 - Charlie2 DNA MER1_type -2565 297 115 3651 142 60 9 chr1 205929502 205930169 -36734184 - Tigger3(Golem) DNA MER2_type -2 3027 2327 562 209 0 29 chr1 205930157 205930262 -36734091 - Tigger3(Golem) DNA MER2_type -2927 102 1 * 296 265 0 41 chr1 205930257 205930279 -36734074 - Charlie2 DNA MER1_type -2740 122 101 * 2594 194 130 25 chr1 205930279 205930917 -36733436 - MER44D DNA MER2_type 0 705 1 296 265 0 41 chr1 205930917 205930992 -36733361 - Charlie2 DNA MER1_type -2761 101 29 2076 80 3 21 chr1 205931460 205931746 -36732607 - AluY SINE Alu -30 281 1 21 0 0 0 chr1 205932095 205932116 -36732237 + AT_rich Low_complexity Low_complexity 1 21 0 337 196 0 0 chr1 205933430 205933486 -36730867 + AluS SINE Alu 2 57 -246 4474 69 5 2 chr1 205933591 205934159 -36730194 - L1PA10 LINE L1 -211 5957 5388 2160 102 7 10 chr1 205934644 205934938 -36729415 - AluSx SINE Alu -19 293 1 1801 125 18 14 chr1 205935285 205935592 -36728761 - AluSg1 SINE Alu 0 308 1 2235 119 0 0 chr1 205936004 205936324 -36728029 - AluSx SINE Alu 0 320 1 288 256 105 0 chr1 205937073 205937159 -36727194 + MER94 DNA DNA 39 133 -1 1615 149 54 63 chr1 205937216 205937531 -36726822 - AluJo SINE Alu 0 312 1 262 226 115 68 chr1 205937717 205937952 -36726401 - L1ME4a LINE L1 -31 6090 5845 30 0 0 0 chr1 205937966 205937996 -36726357 + AT_rich Low_complexity Low_complexity 1 30 0 982 246 109 49 chr1 205938176 205938688 -36725665 - L1MC4a LINE L1 -1905 5903 5361 28 29 0 0 chr1 205938820 205938855 -36725498 + AT_rich Low_complexity Low_complexity 1 35 0 281 342 18 9 chr1 205939034 205939145 -36725208 + MIR SINE MIR 28 139 -123 233 217 43 0 chr1 205939250 205939319 -36725034 - LTR67 LTR ERVL -7 550 479 536 276 106 72 chr1 205939330 205939810 -36724543 + MLT1H LTR MaLR 1 547 -2 414 305 62 64 chr1 205939892 205940312 -36724041 - LTR67 LTR ERVL -136 421 3 1432 168 0 0 chr1 205940397 205940623 -36723730 + AluSq SINE Alu 3 228 -85 1404 92 11 0 chr1 205940724 205940909 -36723444 + AluSg/x SINE Alu 113 299 -11 11863 176 80 15 chr1 205940910 205941295 -36723058 - L1PA13 LINE L1 -4312 2485 2126 1822 151 7 7 chr1 205941295 205941574 -36722779 - AluSx SINE Alu -1 311 33 11863 176 80 15 chr1 205941574 205943505 -36720848 - L1PA13 LINE L1 -4671 2126 1 1119 287 64 37 chr1 205943617 205944275 -36720078 + L1ME1 LINE L1 1166 1739 -4476 395 246 93 0 chr1 205944353 205944471 -36719882 + L1ME1 LINE L1 1959 2087 -4309 2216 225 59 28 chr1 205944497 205944773 -36719580 + L1ME1 LINE L1 5084 5350 -885 2320 107 0 0 chr1 205944773 205945072 -36719281 - AluSx SINE Alu -13 299 1 2216 225 59 28 chr1 205945072 205945638 -36718715 + L1ME1 LINE L1 5350 5953 -282 498 216 111 0 chr1 205945641 205945794 -36718559 + L1MEc LINE L1 3246 3415 -2800 1315 265 161 6 chr1 205945998 205946469 -36717884 - L1ME3A LINE L1 -34 6136 5593 24 67 0 0 chr1 205946580 205946625 -36717728 + AT_rich Low_complexity Low_complexity 1 45 0 489 70 14 14 chr1 205946625 205946696 -36717657 - FLAM_A SINE Alu -54 78 8 328 256 96 24 chr1 205946719 205946844 -36717509 - L1ME3A LINE L1 -771 5391 5258 264 33 0 0 chr1 205946962 205946992 -36717361 - LTR24C LTR ERV1 -87 548 519 459 357 40 53 chr1 205948069 205948464 -36715889 - L2 LINE L2 -15 3257 2868 2244 134 3 0 chr1 205949044 205949351 -36715002 - AluSx SINE Alu -4 308 1 25 0 0 0 chr1 205949787 205949812 -36714541 + AT_rich Low_complexity Low_complexity 1 25 0 187 298 67 34 chr1 205950260 205950430 -36713923 - L2 LINE L2 -263 3009 2831 2711 30 0 0 chr1 205950430 205950729 -36713624 + AluY SINE Alu 1 299 -12 2021 125 3 23 chr1 205950855 205951159 -36713194 + AluJb SINE Alu 6 303 -9 185 315 65 11 chr1 205951195 205951287 -36713066 - L2 LINE L2 -652 2662 2566 340 267 122 0 chr1 205952456 205952593 -36711760 - MIR SINE MIR -6 256 101 567 198 58 16 chr1 205952969 205953090 -36711263 + FRAM SINE Alu 40 165 -11 630 149 24 164 chr1 205954326 205954381 -36709972 - MLT1B LTR MaLR -66 324 263 2218 99 10 0 chr1 205954381 205954674 -36709679 + AluSq SINE Alu 1 296 -17 630 149 24 164 chr1 205954674 205954826 -36709527 - MLT1B LTR MaLR -127 263 146 5435 119 92 46 chr1 205954840 205956190 -36708163 + pTR5 LTR ERV1 743 2438 0 725 159 20 53 chr1 205956193 205956344 -36708009 - MLT1B LTR MaLR -244 146 1 1556 209 18 3 chr1 205956554 205956837 -36707516 - AluJo SINE Alu -25 287 1 189 0 0 0 chr1 205957582 205957603 -36706750 + (T)n Simple_repeat Simple_repeat 1 21 0 478 258 56 63 chr1 205957747 205958015 -36706338 - L1ME LINE L1 -5611 459 194 2297 99 7 3 chr1 205958124 205958426 -36705927 + AluSx SINE Alu 1 303 -9 10462 189 61 21 chr1 205958606 205960666 -36703687 + L1M2 LINE L1 7 2148 -4701 1097 139 46 12 chr1 205960768 205960941 -36703412 - AluJb SINE Alu -133 179 1 225 0 0 0 chr1 205962563 205962588 -36701765 + (CA)n Simple_repeat Simple_repeat 2 26 0 213 132 0 0 chr1 205962661 205962699 -36701654 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 772 171 0 21 chr1 205962828 205962968 -36701385 - FLAM_C SINE Alu -5 138 2 985 140 0 0 chr1 205962992 205963128 -36701225 - FRAM SINE Alu -30 146 11 346 224 19 47 chr1 205963892 205963999 -36700354 + CT-rich Low_complexity Low_complexity 2 105 0 625 263 57 6 chr1 205964556 205964731 -36699622 + MIR SINE MIR 20 203 -59 391 219 154 0 chr1 205964848 205964971 -36699382 + L1MC5 LINE L1 7720 7861 -100 467 138 172 0 chr1 205965068 205965155 -36699198 - MER2 DNA MER2_type -10 335 234 593 198 0 9 chr1 205965155 205965288 -36699065 - FLAM_A SINE Alu 0 151 20 1642 88 44 0 chr1 205965296 205965524 -36698829 - MER2 DNA MER2_type -105 240 3 5482 160 55 21 chr1 205965528 205966150 -36698203 + Tigger6a DNA MER2_type 1 674 -923 1028 35 21 35 chr1 205966150 205966291 -36698062 + MER85 DNA T2_type 1 139 0 5482 160 55 21 chr1 205966291 205966714 -36697639 + Tigger6a DNA MER2_type 674 1081 -2 2618 51 0 0 chr1 205966783 205967079 -36697274 - AluY SINE Alu -15 296 1 468 250 0 0 chr1 205967099 205967211 -36697142 + MIR SINE MIR 98 209 -53 696 211 31 19 chr1 205967492 205967653 -36696700 - MER106B DNA MER1_type 0 1059 897 2285 113 13 0 chr1 205967836 205968138 -36696215 - AluSq SINE Alu -7 306 1 362 267 22 22 chr1 205968191 205968281 -36696072 + MLT1L LTR MaLR 150 239 -376 252 0 0 0 chr1 205968297 205968325 -36696028 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1335 149 4 46 chr1 205968352 205968593 -36695760 + AluJb SINE Alu 1 231 -81 556 242 90 99 chr1 205968623 205968839 -36695514 + MLT1L LTR MaLR 288 502 -113 2088 134 3 0 chr1 205968839 205969137 -36695216 - AluSx SINE Alu -2 310 12 556 242 90 99 chr1 205969137 205969242 -36695111 + MLT1L LTR MaLR 502 606 -9 393 299 121 10 chr1 205969418 205969625 -36694728 + MIR SINE MIR 27 256 -6 774 224 6 31 chr1 205969749 205970034 -36694319 + MER52C LTR ERV1 96 357 -921 1085 121 0 24 chr1 206020035 206020200 -36644153 + AluSq SINE Alu 140 300 -13 219 193 0 70 chr1 206020377 206020434 -36643919 - L2 LINE L2 0 3272 3220 205 146 18 55 chr1 206020444 206020499 -36643854 + A-rich Low_complexity Low_complexity 3 55 0 1814 148 7 0 chr1 206020619 206020910 -36643443 + AluSg SINE Alu 1 293 -17 235 175 48 32 chr1 206020974 206021037 -36643316 + LTR16A1 LTR ERVL 363 426 -31 2124 141 51 25 chr1 206021177 206021531 -36642822 - THE1B LTR MaLR -1 363 1 1205 230 123 3 chr1 206021531 206021888 -36642465 - L2 LINE L2 -2304 1010 611 350 273 86 0 chr1 206021950 206022089 -36642264 + L2 LINE L2 1186 1336 -1978 2703 155 50 47 chr1 206022408 206022989 -36641364 - L1MB7 LINE L1 -15 6169 5587 1490 143 0 35 chr1 206023471 206023729 -36640624 + AluSx SINE Alu 47 295 -17 624 120 19 74 chr1 206024186 206024294 -36640059 - FRAM SINE Alu -21 155 54 820 174 0 0 chr1 206024333 206024465 -36639888 + AluSq/x SINE Alu 2 133 -180 38 61 0 0 chr1 206024588 206024654 -36639699 + AT_rich Low_complexity Low_complexity 1 66 0 305 205 113 176 chr1 206026021 206026349 -36638004 - MLT1H LTR MaLR -27 522 227 2085 125 7 10 chr1 206026443 206026748 -36637605 + AluSq SINE Alu 1 304 -9 1444 182 19 0 chr1 206026949 206027213 -36637140 + AluSp SINE Alu 2 270 -43 1229 159 15 0 chr1 206027421 206027622 -36636731 + AluJo SINE Alu 1 204 -108 2092 255 73 30 chr1 206027853 206028657 -36635696 + L1MC4a LINE L1 4507 5345 -801 2377 84 3 3 chr1 206028815 206029112 -36635241 + AluY SINE Alu 1 297 -14 1859 213 27 8 chr1 206029113 206029480 -36634873 - MLT1A2 LTR MaLR 0 374 1 349 286 0 24 chr1 206029708 206029834 -36634519 - MLT1H LTR MaLR -374 175 53 815 303 53 26 chr1 206029991 206030443 -36633910 + L1MC4a LINE L1 5413 5876 -1932 252 230 115 23 chr1 206030553 206030640 -36633713 + MLT1L LTR MaLR 4 98 -517 1303 168 56 39 chr1 206030818 206031104 -36633249 - MSTC LTR MaLR -137 291 1 22 0 0 0 chr1 206032342 206032364 -36631989 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr1 206032425 206032446 -36631907 + (A)n Simple_repeat Simple_repeat 1 21 0 2112 136 0 0 chr1 206032446 206032748 -36631605 + AluSx SINE Alu 1 302 -10 252 150 30 17 chr1 206032827 206032903 -36631450 + L1MB2 LINE L1 6087 6153 -18 915 229 101 33 chr1 206033350 206033686 -36630667 - L1ME3 LINE L1 -210 5952 5594 525 226 137 20 chr1 206034008 206034154 -36630199 + MIR SINE MIR 11 173 -89 412 123 0 0 chr1 206034360 206034417 -36629936 + MER30 DNA MER1_type 174 230 0 2151 121 3 0 chr1 206034562 206034868 -36629485 + AluSg SINE Alu 1 307 -3 1830 143 3 51 chr1 206034879 206035012 -36629341 + AluSx SINE Alu 1 139 -173 369 0 0 0 chr1 206035012 206035053 -36629300 + (TA)n Simple_repeat Simple_repeat 2 42 0 1830 143 3 51 chr1 206035053 206035234 -36629119 + AluSx SINE Alu 139 300 -12 386 233 69 17 chr1 206035330 206035446 -36628907 - L1ME LINE L1 -448 5673 5552 345 208 161 157 chr1 206035554 206035677 -36628676 - MIR SINE MIR 0 262 136 2130 127 7 0 chr1 206035677 206035976 -36628377 + AluSx SINE Alu 1 301 -11 345 208 161 157 chr1 206035976 206036088 -36628265 - MIR SINE MIR -126 136 26 2456 74 0 3 chr1 206036382 206036681 -36627672 + AluSg SINE Alu 3 300 -10 616 244 36 42 chr1 206036820 206036988 -36627365 + MIR SINE MIR 57 223 -39 326 210 49 0 chr1 206037749 206037830 -36626523 - MSTA-int LTR MaLR -1493 87 3 1772 211 63 10 chr1 206037845 206038239 -36626114 - MSTA LTR MaLR -13 415 1 625 234 7 0 chr1 206038290 206038427 -36625926 - L1MC3 LINE L1 -626 7159 7022 433 143 0 0 chr1 206038431 206038494 -36625859 - L1MC1 LINE L1 -3 6330 6268 6057 122 27 40 chr1 206038495 206039529 -36624824 + L1MA9 LINE L1 5292 6312 0 5081 181 44 8 chr1 206039574 206040844 -36623509 - L1MC1 LINE L1 -100 6233 4918 2311 99 3 0 chr1 206041104 206041398 -36622955 - AluSp SINE Alu -16 297 3 378 211 37 28 chr1 206041766 206041875 -36622478 - MER115 DNA AcHobo -13 680 571 752 215 16 26 chr1 206042046 206042237 -36622116 - SVA Other Other -744 642 454 2004 102 36 0 chr1 206043864 206044161 -36620192 + AluSp SINE Alu 1 307 0 189 273 25 91 chr1 206044161 206044282 -36620071 - MIR SINE MIR -80 128 16 1947 134 7 4 chr1 206044657 206044933 -36619420 + AluSx SINE Alu 1 277 -35 338 272 29 87 chr1 206045235 206045408 -36618945 - MIR3 SINE MIR 0 208 46 220 295 33 0 chr1 206045563 206045624 -36618729 - L2 LINE L2 0 3272 3210 2257 105 0 23 chr1 206045672 206045976 -36618377 + AluSx SINE Alu 1 297 -15 838 176 9 126 chr1 206046410 206046576 -36617777 - AluJo SINE Alu 0 311 179 2030 141 6 16 chr1 206046576 206046710 -36617643 + AluSx SINE Alu 1 135 -177 2175 124 0 16 chr1 206046710 206047017 -36617336 + AluSx SINE Alu 1 302 -10 2030 141 6 16 chr1 206047017 206047195 -36617158 + AluSx SINE Alu 135 310 -2 838 176 9 126 chr1 206047195 206047277 -36617076 - AluJo SINE Alu -132 179 89 490 162 0 91 chr1 206047278 206047377 -36616976 - AluJo SINE Alu -163 149 60 1692 152 3 52 chr1 206047568 206047744 -36616609 - AluSx SINE Alu -17 295 139 369 0 0 0 chr1 206047744 206047785 -36616568 + (TA)n Simple_repeat Simple_repeat 1 41 0 1692 152 3 52 chr1 206047785 206047918 -36616435 - AluSx SINE Alu -173 139 1 2445 88 3 0 chr1 206047929 206048235 -36616118 - AluSg SINE Alu -3 307 1 400 257 126 45 chr1 206048243 206048380 -36615973 - L1ME4a LINE L1 -3 6118 5994 1618 90 85 0 chr1 206048380 206048592 -36615761 - MER30 DNA MER1_type 0 230 1 400 257 126 45 chr1 206048592 206048610 -36615743 - L1ME4a LINE L1 -127 5994 5979 2243 102 0 10 chr1 206048610 206048903 -36615450 - AluSx SINE Alu -22 290 1 400 257 126 45 chr1 206048903 206048968 -36615385 - L1ME4a LINE L1 -142 5979 5879 534 228 25 106 chr1 206049141 206049378 -36614975 + MER41E LTR ERV1 54 271 -241 2382 84 0 22 chr1 206049420 206049731 -36614622 + AluY SINE Alu 1 304 -7 183 42 0 0 chr1 206049733 206049757 -36614596 + (TA)n Simple_repeat Simple_repeat 1 24 0 612 154 29 0 chr1 206050709 206050813 -36613540 + MER5A DNA MER1_type 2 108 -81 735 342 87 51 chr1 206050863 206051284 -36613069 + L2 LINE L2 2165 2569 -703 3081 74 0 0 chr1 206051284 206051648 -36612705 + THE1B LTR MaLR 1 364 0 735 342 87 51 chr1 206051648 206052265 -36612088 + L2 LINE L2 2569 3263 -9 206 315 144 44 chr1 206052282 206052552 -36611801 + L2 LINE L2 1777 2073 -1241 452 186 171 116 chr1 206052625 206052824 -36611529 + MER63A DNA MER1_type 1 210 0 190 329 55 91 chr1 206052867 206053086 -36611267 - L2 LINE L2 -116 3156 2946 183 245 0 160 chr1 206053130 206053236 -36611117 + MIR3 SINE MIR 5 93 -115 631 245 81 105 chr1 206053789 206054325 -36610028 - L1ME3A LINE L1 -20 6150 5618 2214 75 47 0 chr1 206054545 206054824 -36609529 - AluY SINE Alu -19 292 1 221 263 88 15 chr1 206055274 206055376 -36608977 - MIR SINE MIR -44 164 57 260 263 12 25 chr1 206055873 206055953 -36608400 + MIR SINE MIR 154 232 -30 2366 68 10 3 chr1 206058381 206058677 -36605676 - AluSq SINE Alu -15 298 1 212 167 0 0 chr1 206059112 206059148 -36605205 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1825 133 42 11 chr1 206059171 206059456 -36604897 + AluJb SINE Alu 1 294 -18 2547 62 0 7 chr1 206061594 206061898 -36602455 - AluY SINE Alu -9 302 1 21 0 0 0 chr1 206062880 206062901 -36601452 + AT_rich Low_complexity Low_complexity 1 21 0 38 61 0 0 chr1 206063037 206063103 -36601250 + AT_rich Low_complexity Low_complexity 1 66 0 22 35 0 0 chr1 206064341 206064370 -36599983 + AT_rich Low_complexity Low_complexity 1 29 0 3026 139 50 47 chr1 206064538 206065119 -36599234 - L1MB7 LINE L1 -15 6169 5587 298 253 153 33 chr1 206068363 206068554 -36595799 + MIR SINE MIR 32 253 -9 298 261 230 6 chr1 206069914 206070079 -36594274 + MIR SINE MIR 48 249 -13 6025 264 117 24 chr1 206071314 206073417 -36590936 - L2 LINE L2 -4 3309 933 2359 123 51 20 chr1 206073417 206073768 -36590585 - THE1B LTR MaLR -2 362 1 6025 264 117 24 chr1 206073768 206074125 -36590228 - L2 LINE L2 -2380 933 611 484 237 86 0 chr1 206074187 206074326 -36590027 + L2 LINE L2 1186 1336 -1978 2227 91 57 3 chr1 206074556 206074852 -36589501 - AluSx SINE Alu 0 312 1 733 265 70 22 chr1 206074882 206075195 -36589158 - HAL1 LINE L1 -29 2478 2151 1764 189 15 24 chr1 206075214 206075552 -36588801 + MER2 DNA MER2_type 1 335 -10 3584 190 43 12 chr1 206075635 206076627 -36587726 - L1MB7 LINE L1 -653 5531 4502 1353 129 15 0 chr1 206076853 206077054 -36587299 - AluJo SINE Alu -108 204 1 423 287 23 47 chr1 206077481 206077610 -36586743 - MIR SINE MIR -135 127 2 2406 60 3 10 chr1 206077634 206077932 -36586421 + AluY SINE Alu 1 296 -15 321 311 59 0 chr1 206079524 206079643 -36584710 - MIR SINE MIR -112 150 25 4303 115 54 1 chr1 206079812 206080599 -36583754 + L1MA7 LINE L1 5310 6266 -25 12592 166 21 28 chr1 206080669 206080945 -36583408 - L1PB1 LINE L1 -7 6860 6584 2122 105 17 20 chr1 206080945 206081240 -36583113 + AluSx SINE Alu 1 294 -18 12592 166 21 28 chr1 206081240 206081809 -36582544 - L1PB1 LINE L1 -283 6584 6012 4389 105 61 88 chr1 206081809 206082616 -36581737 - LTR1 LTR ERV1 0 785 1 12592 166 21 28 chr1 206082616 206084050 -36580303 - L1PB1 LINE L1 -855 6012 4610 1958 97 86 0 chr1 206084050 206084329 -36580024 - AluSq SINE Alu -10 303 1 12592 166 21 28 chr1 206084329 206085637 -36578716 - L1PB1 LINE L1 -2257 4610 3294 14165 98 105 74 chr1 206085655 206087909 -36576444 - L1PB1 LINE L1 -4173 2690 508 2095 113 7 3 chr1 206087909 206088227 -36576126 - AluSx SINE Alu 0 319 1 14165 98 105 74 chr1 206088227 206088249 -36576104 - L1PB1 LINE L1 -6355 508 488 535 110 0 0 chr1 206088249 206088322 -36576031 - 7SK RNA RNA 0 193 121 14165 98 105 74 chr1 206088322 206088579 -36575774 - L1PB1 LINE L1 -6375 488 1 442 149 14 0 chr1 206089962 206090036 -36574317 + MER53 DNA DNA 115 189 0 634 200 226 11 chr1 206096234 206096368 -36567985 + MIR SINE MIR 5 109 -153 2265 101 0 3 chr1 206096368 206096665 -36567688 + AluSc SINE Alu 1 296 -13 634 200 226 11 chr1 206096665 206096720 -36567633 + MIR SINE MIR 109 235 -27 528 236 127 25 chr1 206098942 206099099 -36565254 - MIR SINE MIR -89 173 1 906 217 110 42 chr1 206099411 206099747 -36564606 + L1ME3 LINE L1 5594 5952 -210 1792 179 51 3 chr1 206099961 206100577 -36563776 - L1MC/D LINE L1 -743 5403 4918 2357 95 3 0 chr1 206100837 206101133 -36563220 - AluSp SINE Alu -16 297 1 393 229 18 9 chr1 206101497 206101606 -36562747 - MER115 DNA AcHobo -13 680 571 1441 171 28 54 chr1 206101717 206102108 -36562245 - SVA Other Other -573 813 433 1372 272 96 48 chr1 206102123 206102175 -36562178 - MER115 DNA AcHobo -96 597 549 2001 159 0 0 chr1 206102175 206102484 -36561869 - AluSx SINE Alu -3 309 1 1372 272 96 48 chr1 206102484 206102931 -36561422 - MER115 DNA AcHobo -144 549 74 549 177 0 0 chr1 206102972 206103068 -36561285 - MER5A DNA MER1_type -84 105 10 228 250 77 0 chr1 206103078 206103130 -36561223 - MER115 DNA AcHobo -635 58 3 2135 132 0 0 chr1 206103450 206103753 -36560600 - AluSx SINE Alu -9 303 1 4575 141 10 39 chr1 206104103 206104919 -36559434 - L1MA9 LINE L1 -229 6083 5292 433 143 0 0 chr1 206104920 206104983 -36559370 + L1MC1 LINE L1 6268 6330 -3 714 204 7 0 chr1 206104987 206105124 -36559229 + L1MC3 LINE L1 7022 7159 -626 2579 150 61 10 chr1 206105175 206105582 -36558771 + MSTA LTR MaLR 1 428 0 10087 165 15 12 chr1 206105583 206107228 -36557125 + MSTA-int LTR MaLR 2 1651 0 2196 183 43 24 chr1 206107228 206107648 -36556705 + MSTA LTR MaLR 1 428 0 621 234 21 0 chr1 206107651 206107792 -36556561 + MER8 DNA MER2_type 34 177 -62 314 190 103 0 chr1 206107769 206107827 -36556526 + MER2 DNA MER2_type 282 345 0 * 347 135 19 0 chr1 206107827 206107877 -36556476 - Tigger2 DNA MER2_type -2647 71 21 2500 77 3 3 chr1 206107883 206108193 -36556160 - AluSp SINE Alu -2 311 2 976 159 169 10 chr1 206108230 206108425 -36555928 + L1MC3 LINE L1 7164 7389 -396 1274 144 0 21 chr1 206108425 206108562 -36555791 + AluSx SINE Alu 1 134 -178 2071 152 0 0 chr1 206108562 206108864 -36555489 + AluSx SINE Alu 2 303 -9 1274 144 0 21 chr1 206108864 206108920 -36555433 + AluSx SINE Alu 134 190 -122 2549 48 7 16 chr1 206108952 206109262 -36555091 + AluY SINE Alu 1 307 -4 498 50 0 0 chr1 206109262 206109322 -36555031 + AluSc SINE Alu 75 134 -175 2333 99 0 7 chr1 206109322 206109625 -36554728 + AluSg SINE Alu 1 301 -9 2277 104 16 0 chr1 206109826 206110133 -36554220 + AluSq SINE Alu 2 313 0 605 87 0 43 chr1 206110139 206110231 -36554122 + L1MC3 LINE L1 7378 7465 -320 817 152 0 0 chr1 206110271 206110396 -36553957 + AluJb SINE Alu 176 300 -12 1269 163 11 130 chr1 206110424 206110471 -36553882 + L1MC3 LINE L1 7462 7513 -272 2138 126 3 0 chr1 206110471 206110780 -36553573 + AluSp SINE Alu 1 310 -3 1269 163 11 130 chr1 206110780 206111100 -36553253 + L1MC3 LINE L1 7513 7785 0 2267 111 3 0 chr1 206111169 206111475 -36552878 + AluSx SINE Alu 1 307 -5 1398 171 53 95 chr1 206111735 206112126 -36552227 - MLT1A2 LTR MaLR 0 457 1 965 276 16 8 chr1 206112126 206112372 -36551981 + MIR SINE MIR 14 261 -1 317 89 18 18 chr1 206112877 206112933 -36551420 - L1MB2 LINE L1 -18 6153 6098 2308 116 0 0 chr1 206113031 206113333 -36551020 - AluSx SINE Alu -10 302 1 189 0 0 0 chr1 206113333 206113354 -36550999 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr1 206113415 206113436 -36550917 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 206115203 206115233 -36549120 + AT_rich Low_complexity Low_complexity 1 30 0 225 262 24 48 chr1 206115304 206115388 -36548965 + MIR3 SINE MIR 121 202 -6 195 42 0 0 chr1 206115725 206115749 -36548604 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 376 319 88 19 chr1 206115812 206115972 -36548381 - MIR3 SINE MIR -37 171 1 1257 188 60 108 chr1 206116093 206116509 -36547844 + MSTD LTR MaLR 1 396 0 1029 119 93 5 chr1 206116635 206116851 -36547502 - MER33 DNA MER1_type -97 227 1 603 237 23 68 chr1 206117254 206117397 -36546956 - MIR SINE MIR -91 171 36 1881 107 59 7 chr1 206117397 206117686 -36546667 - AluSx SINE Alu -8 304 1 603 237 23 68 chr1 206117686 206117719 -36546634 - MIR SINE MIR -226 36 3 534 295 35 40 chr1 206118248 206118382 -36545971 + MIR SINE MIR 11 145 -117 2016 102 0 45 chr1 206118382 206118696 -36545657 + AluSc SINE Alu 1 300 -9 534 295 35 40 chr1 206118696 206118788 -36545565 + MIR SINE MIR 145 236 -26 484 313 28 7 chr1 206118993 206119176 -36545177 + MIR SINE MIR 3 187 -71 396 0 0 0 chr1 206119615 206119659 -36544694 + (TGG)n Simple_repeat Simple_repeat 1 44 0 272 216 0 0 chr1 206120235 206120286 -36544067 + L2 LINE L2 3183 3233 -39 294 280 57 44 chr1 206120486 206120617 -36543736 + MIR SINE MIR 17 142 -66 202 277 43 0 chr1 206120763 206120810 -36543543 - L2 LINE L2 -14 3299 3251 908 236 31 27 chr1 206121205 206121430 -36542923 - MIR SINE MIR -6 256 31 1918 103 0 0 chr1 206121750 206122002 -36542351 - AluSg SINE Alu -58 252 1 248 248 289 8 chr1 206122030 206122151 -36542202 + MIR SINE MIR 48 202 -60 296 273 27 18 chr1 206122157 206122267 -36542086 - MLT1L LTR MaLR -10 605 495 741 241 47 66 chr1 206122398 206122655 -36541698 - MLT1L LTR MaLR -347 268 17 2325 69 3 16 chr1 206123317 206123634 -36540719 - AluSq SINE Alu 0 313 1 201 303 15 15 chr1 206123959 206124025 -36540328 + MIR3 SINE MIR 95 160 -48 211 147 0 88 chr1 206124038 206124106 -36540247 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 2982 84 38 70 chr1 206124788 206125290 -36539063 - LTR21A LTR ERV1 -19 486 1 1044 154 0 0 chr1 206125338 206125513 -36538840 - AluSg/x SINE Alu -4 306 132 2137 92 4 0 chr1 206125521 206125822 -36538531 - AluSp SINE Alu 0 302 1 1763 165 197 10 chr1 206125968 206126375 -36537978 + MLT1D LTR MaLR 23 505 0 2090 86 0 33 chr1 206126407 206126740 -36537613 - AluY SINE Alu 0 311 1 1868 82 0 4 chr1 206126971 206127214 -36537139 + AluY SINE Alu 56 297 -14 1845 213 22 3 chr1 206127215 206127582 -36536771 - MLT1A2 LTR MaLR 0 374 1 542 243 18 20 chr1 206127796 206127947 -36536406 - MLT1H LTR MaLR -240 171 42 879 259 35 111 chr1 206128107 206128504 -36535849 + L2 LINE L2 2906 3272 0 698 246 58 54 chr1 206129160 206129587 -36534766 - L1MC5 LINE L1 -32 7929 7501 869 203 40 34 chr1 206129969 206130146 -36534207 - MER45A DNA AcHobo 0 178 1 710 172 82 0 chr1 206130416 206130550 -36533803 + MIR SINE MIR 22 166 -96 2289 70 0 0 chr1 206130550 206130873 -36533480 + AluY SINE Alu 1 323 0 182 231 39 0 chr1 206130873 206130925 -36533428 + MIR SINE MIR 149 202 -60 315 288 144 0 chr1 206131104 206131215 -36533138 - L2 LINE L2 -2 3311 3185 2356 90 0 6 chr1 206132102 206132414 -36531939 + AluSg SINE Alu 1 310 0 1421 111 0 0 chr1 206132699 206132934 -36531419 + AluSg/x SINE Alu 84 318 0 385 123 0 0 chr1 206133181 206133238 -36531115 - Alu SINE Alu -1 299 243 324 0 0 0 chr1 206133238 206133274 -36531079 + (TG)n Simple_repeat Simple_repeat 2 37 0 1571 179 7 10 chr1 206133294 206133584 -36530769 + AluJo SINE Alu 1 289 -23 369 0 0 0 chr1 206133889 206133930 -36530423 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 302 31 23 chr1 206134081 206134210 -36530143 - L2 LINE L2 -21 3251 3122 273 135 0 0 chr1 206134275 206134327 -36530026 + (GA)n Simple_repeat Simple_repeat 1 52 0 2240 113 0 0 chr1 206134598 206134908 -36529445 - AluSx SINE Alu -2 310 1 394 283 29 29 chr1 206136538 206136676 -36527677 + MIR SINE MIR 2 139 -123 1940 105 53 33 chr1 206137200 206137504 -36526849 - AluSg SINE Alu 0 310 1 6029 83 19 50 chr1 206137908 206139195 -36525158 - SVA Other Other -554 1386 433 1698 72 41 0 chr1 206139296 206139517 -36524836 - AluSx SINE Alu -82 230 1 189 147 0 0 chr1 206139701 206139735 -36524618 + (TC)n Simple_repeat Simple_repeat 2 35 0 857 267 99 59 chr1 206139848 206140252 -36524101 + LTR16C LTR ERVL 72 491 0 2102 159 83 13 chr1 206140403 206140787 -36523566 + MSTB LTR MaLR 1 411 -15 1899 161 16 33 chr1 206141080 206141446 -36522907 + L1MB5 LINE L1 5815 6174 0 1582 109 42 8 chr1 206141809 206142048 -36522305 - AluSq SINE Alu -60 253 7 306 0 0 0 chr1 206143207 206143241 -36521112 + (CA)n Simple_repeat Simple_repeat 2 35 0 936 230 19 75 chr1 206143291 206143556 -36520797 - MIR SINE MIR 0 262 13 340 322 145 79 chr1 206143601 206143918 -36520435 - L2 LINE L2 -2 3270 2933 2230 73 11 3 chr1 206143974 206144261 -36520092 + AluSq SINE Alu 13 301 -12 2358 74 0 0 chr1 206144261 206144570 -36519783 + AluY SINE Alu 1 309 -2 256 333 44 16 chr1 206144627 206144810 -36519543 - L2 LINE L2 -521 2793 2606 616 236 17 29 chr1 206144810 206144984 -36519369 - MER5B DNA MER1_type -4 174 3 2100 99 7 7 chr1 206145077 206145369 -36518984 - AluSx SINE Alu -20 292 1 320 206 44 15 chr1 206145369 206145437 -36518916 + MIR SINE MIR 98 167 -95 21 36 0 0 chr1 206145444 206145472 -36518881 + AT_rich Low_complexity Low_complexity 1 28 0 1012 203 0 31 chr1 206145597 206145824 -36518529 - AluJo SINE Alu -12 300 81 1490 206 55 16 chr1 206145838 206146149 -36518204 + MSTD LTR MaLR 66 388 -8 223 280 0 40 chr1 206146152 206146227 -36518126 + MIR SINE MIR 191 262 0 578 296 83 83 chr1 206146232 206146651 -36517702 - L2 LINE L2 -693 2621 2200 2105 106 20 0 chr1 206146651 206146944 -36517409 + AluSp SINE Alu 1 299 -14 578 296 83 83 chr1 206146944 206147111 -36517242 - L2 LINE L2 -1113 2201 2035 893 134 158 12 chr1 206147765 206147929 -36516424 + MER5A DNA MER1_type 2 189 0 315 150 0 0 chr1 206148093 206148153 -36516200 + (CA)n Simple_repeat Simple_repeat 2 61 0 1997 121 38 0 chr1 206148214 206148504 -36515849 + AluSx SINE Alu 1 301 -11 242 123 246 0 chr1 206148542 206148599 -36515754 + L1MC5 LINE L1 7382 7452 -509 1737 150 11 14 chr1 206148647 206148759 -36515594 + AluJb SINE Alu 1 112 -200 2108 116 7 0 chr1 206148759 206149062 -36515291 + AluSx SINE Alu 1 305 -7 1737 150 11 14 chr1 206149062 206149236 -36515117 + AluJb SINE Alu 112 286 -26 648 80 0 0 chr1 206149236 206149324 -36515029 - AluS SINE Alu -223 89 2 2182 84 7 26 chr1 206149445 206149753 -36514600 + AluSg SINE Alu 1 302 -8 267 103 0 0 chr1 206150060 206150099 -36514254 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 685 336 12 4 chr1 206151948 206152204 -36512149 - MIR SINE MIR 0 262 5 1855 142 3 23 chr1 206152579 206152888 -36511465 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr1 206152904 206152926 -36511427 + AT_rich Low_complexity Low_complexity 1 22 0 2350 83 3 0 chr1 206153578 206153890 -36510463 + AluSp SINE Alu 1 313 0 305 309 109 73 chr1 206154121 206154461 -36509892 - L2 LINE L2 0 3272 2921 1872 166 0 0 chr1 206155021 206155317 -36509036 - AluJb SINE Alu -16 296 1 504 48 0 0 chr1 206155360 206155423 -36508930 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 193 254 18 36 chr1 206155676 206155731 -36508622 - L2 LINE L2 -16 3256 3203 23 0 0 0 chr1 206155773 206155796 -36508557 + AT_rich Low_complexity Low_complexity 1 23 0 193 283 120 11 chr1 206156055 206156147 -36508206 - MIR SINE MIR -87 121 20 213 94 0 0 chr1 206157326 206157358 -36506995 + (CA)n Simple_repeat Simple_repeat 1 32 0 390 271 101 8 chr1 206157457 206157586 -36506767 - MIR SINE MIR -48 214 74 500 233 169 23 chr1 206157587 206157759 -36506594 - MIR SINE MIR 0 262 66 655 111 17 0 chr1 206157770 206157887 -36506466 - Charlie5 DNA MER1_type -10 2602 2484 886 141 14 0 chr1 206157897 206158039 -36506314 - FRAM SINE Alu -9 167 24 8725 164 53 35 chr1 206158048 206159447 -36504906 - Charlie5 DNA MER1_type -131 2493 1121 3835 123 65 60 chr1 206159447 206159820 -36504533 - L1MA9 LINE L1 -3 6309 5939 2194 105 0 3 chr1 206159820 206160124 -36504229 - AluSg SINE Alu -7 303 1 2165 104 0 0 chr1 206160126 206160423 -36503930 - AluSx SINE Alu -15 297 1 3835 123 65 60 chr1 206160423 206160797 -36503556 - L1MA9 LINE L1 -373 5939 5555 8725 164 53 35 chr1 206160797 206161130 -36503223 - Charlie5 DNA MER1_type -1503 1121 796 1857 107 29 0 chr1 206161130 206161402 -36502951 - AluSx SINE Alu -32 280 1 8725 164 53 35 chr1 206161402 206161514 -36502839 - Charlie5 DNA MER1_type -1828 796 688 1766 151 3 3 chr1 206161514 206161805 -36502548 - AluJb SINE Alu -21 291 1 1999 107 0 53 chr1 206161811 206162129 -36502224 - AluSx SINE Alu -11 301 1 8725 164 53 35 chr1 206162129 206162304 -36502049 - Charlie5 DNA MER1_type -1940 684 428 236 155 0 35 chr1 206162309 206162367 -36501986 + (TTA)n Simple_repeat Simple_repeat 1 56 0 704 132 100 20 chr1 206162390 206162561 -36501792 - Charlie5 DNA MER1_type -2503 109 1 508 255 69 5 chr1 206163211 206163415 -36500938 - L1MEc LINE L1 -5013 1383 1167 400 231 58 13 chr1 206163438 206163594 -36500759 + L1MEc LINE L1 917 1079 -5317 1860 118 0 11 chr1 206163597 206163868 -36500485 - AluSx SINE Alu -39 273 6 2348 268 99 31 chr1 206163873 206164952 -36499401 - L1MEc LINE L1 -5209 1187 35 24 0 0 0 chr1 206165414 206165438 -36498915 + AT_rich Low_complexity Low_complexity 1 24 0 198 300 29 14 chr1 206166111 206166181 -36498172 - MIR SINE MIR -24 238 168 257 340 52 0 chr1 206166216 206166313 -36498040 + L2 LINE L2 2253 2354 -960 607 329 100 39 chr1 206166327 206166911 -36497442 + L2 LINE L2 2643 3261 -52 182 62 31 0 chr1 206167325 206167357 -36496996 + (TG)n Simple_repeat Simple_repeat 1 33 0 249 57 0 0 chr1 206168422 206168457 -36495896 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2287 64 0 7 chr1 206168460 206168742 -36495611 - AluY SINE Alu -30 281 2 661 299 190 30 chr1 206168744 206169345 -36495008 + L2 LINE L2 2127 2823 -491 414 364 44 55 chr1 206169416 206169779 -36494574 + L2 LINE L2 2914 3272 0 704 193 0 0 chr1 206170318 206170432 -36493921 + MER81 DNA DNA 1 114 0 370 314 113 27 chr1 206170477 206170662 -36493691 + L2 LINE L2 3071 3271 -1 183 377 78 0 chr1 206170983 206171060 -36493293 + L2 LINE L2 3208 3290 -23 2263 105 0 0 chr1 206171079 206171374 -36492979 - AluSx SINE Alu -17 295 1 425 305 56 35 chr1 206171708 206171905 -36492448 + L2 LINE L2 2631 2831 -483 2431 94 3 0 chr1 206172417 206172726 -36491627 - AluSq SINE Alu -3 310 1 295 335 110 83 chr1 206172736 206172990 -36491363 + L2 LINE L2 3007 3267 -5 322 258 103 0 chr1 206173263 206173360 -36490993 + L2 LINE L2 2484 2590 -724 1265 221 80 30 chr1 206173570 206173996 -36490357 - L1MA9 LINE L1 -83 6229 5783 224 177 65 0 chr1 206173996 206174058 -36490295 + (TA)n Simple_repeat Simple_repeat 1 66 0 2648 160 101 65 chr1 206174058 206174500 -36489853 - L1MA9 LINE L1 -504 5808 5383 2346 86 0 20 chr1 206174500 206174803 -36489550 - AluSq SINE Alu -15 298 2 2648 160 101 65 chr1 206174803 206174861 -36489492 - L1MA9 LINE L1 -929 5383 5329 2162 145 0 0 chr1 206174861 206175171 -36489182 - AluSx SINE Alu -2 310 1 2648 160 101 65 chr1 206175171 206175878 -36488475 - L1MA9 LINE L1 -983 5329 4536 1837 167 0 3 chr1 206176229 206176528 -36487825 - AluJb SINE Alu -11 301 4 2511 71 7 0 chr1 206177593 206177901 -36486452 - AluSg SINE Alu 0 310 1 640 286 11 27 chr1 206178027 206178212 -36486141 - MER5A DNA MER1_type -1 188 7 2327 60 0 13 chr1 206178457 206178758 -36485595 + AluSg SINE Alu 1 297 -13 181 358 86 7 chr1 206179070 206179221 -36485132 - L2 LINE L2 -780 2534 2372 352 304 151 43 chr1 206180844 206181235 -36483118 + L1M2 LINE L1 374 806 -6043 212 0 36 0 chr1 206183120 206183148 -36481205 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1990 114 4 0 chr1 206183148 206183420 -36480933 - AluSq SINE Alu -40 273 1 300 351 23 15 chr1 206184504 206184635 -36479718 - MIR SINE MIR -114 148 17 296 243 149 0 chr1 206184698 206184805 -36479548 + MIR SINE MIR 94 216 -46 24 32 0 0 chr1 206185617 206185648 -36478705 + AT_rich Low_complexity Low_complexity 1 31 0 560 227 51 51 chr1 206186174 206186209 -36478144 - MER5B DNA MER1_type -2 176 142 1610 125 114 14 chr1 206186209 206186490 -36477863 - AluSx SINE Alu -3 309 1 560 227 51 51 chr1 206186490 206186506 -36477847 - MER5B DNA MER1_type -36 142 127 216 0 0 0 chr1 206186506 206186530 -36477823 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 560 227 51 51 chr1 206186530 206186653 -36477700 - MER5B DNA MER1_type -50 128 1 1560 163 47 40 chr1 206187663 206187964 -36476389 - AluJo SINE Alu -1 311 9 1594 50 0 15 chr1 206188025 206188225 -36476128 + MER107 DNA MER1_type 1 197 0 344 348 67 22 chr1 206189934 206190112 -36474241 - L2 LINE L2 -213 3059 2874 592 307 127 29 chr1 206190276 206191035 -36473318 - L2 LINE L2 -653 2661 1770 981 286 62 34 chr1 206191037 206191453 -36472900 - L2 LINE L2 -611 2703 2276 2079 99 53 33 chr1 206192205 206192508 -36471845 - AluSg SINE Alu -1 309 1 2112 120 0 7 chr1 206193428 206193728 -36470625 - AluSx SINE Alu -14 298 1 25 0 0 0 chr1 206194049 206194074 -36470279 + AT_rich Low_complexity Low_complexity 1 25 0 34 0 0 0 chr1 206194479 206194513 -36469840 + AT_rich Low_complexity Low_complexity 1 34 0 2061 123 10 3 chr1 206194628 206194921 -36469432 - AluSx SINE Alu -17 295 1 4400 184 54 10 chr1 206196191 206197651 -36466702 - L1MB8 LINE L1 -6 6172 4641 555 257 93 0 chr1 206197632 206197846 -36466507 - L1MB8 LINE L1 -3078 3068 2835 * 1074 192 18 0 chr1 206197880 206198099 -36466254 + AluSp SINE Alu 1 223 -90 233 224 31 31 chr1 206198277 206198375 -36465978 + (CGGGG)n Simple_repeat Simple_repeat 5 102 0 703 241 0 19 chr1 206198547 206198709 -36465644 - FAM SINE Alu -16 159 1 2106 120 0 7 chr1 206198714 206199013 -36465340 - AluSc SINE Alu -12 297 1 2267 56 52 0 chr1 206199019 206199306 -36465047 - AluY SINE Alu -7 304 3 651 179 43 113 chr1 206199327 206199629 -36464724 - L1MB8 LINE L1 -3319 2827 2547 2067 82 0 54 chr1 206199945 206200239 -36464114 - AluSx SINE Alu -19 293 16 1743 113 0 17 chr1 206200587 206200827 -36463526 - AluSx SINE Alu -76 236 1 25 0 0 0 chr1 206200877 206200902 -36463451 + AT_rich Low_complexity Low_complexity 1 25 0 1971 150 0 10 chr1 206201004 206201311 -36463042 - AluSx SINE Alu -6 306 3 584 88 0 0 chr1 206201620 206201700 -36462653 - MADE1 DNA Mariner 0 80 1 2235 89 0 20 chr1 206203837 206204140 -36460213 + AluSq SINE Alu 1 297 -16 391 253 56 51 chr1 206204817 206204995 -36459358 - Charlie8 DNA MER1_type -2129 288 110 1027 171 63 9 chr1 206205033 206205312 -36459041 - MER2 DNA MER2_type 0 345 2 345 87 0 0 chr1 206205338 206205384 -36458969 + AluJo SINE Alu 56 101 -201 258 176 33 55 chr1 206205394 206205485 -36458868 + (CATA)n Simple_repeat Simple_repeat 3 91 0 1184 172 5 5 chr1 206205485 206205688 -36458665 + AluJo SINE Alu 105 307 -5 2129 139 0 3 chr1 206206501 206206803 -36457550 - AluJb SINE Alu -11 301 1 1794 137 7 14 chr1 206207411 206207688 -36456665 + AluSq SINE Alu 1 275 -38 1973 132 3 17 chr1 206208433 206208729 -36455624 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr1 206209636 206209660 -36454693 + AT_rich Low_complexity Low_complexity 1 24 0 1612 150 7 29 chr1 206209660 206209961 -36454392 + AluJb SINE Alu 17 311 0 26 30 0 0 chr1 206210083 206210116 -36454237 + AT_rich Low_complexity Low_complexity 1 33 0 694 184 32 0 chr1 206211543 206211668 -36452685 - FLAM_C SINE Alu -3 130 2 216 0 0 0 chr1 206211668 206211692 -36452661 + (T)n Simple_repeat Simple_repeat 1 24 0 2298 106 3 0 chr1 206212210 206212511 -36451842 + AluSp SINE Alu 3 304 -9 292 307 198 28 chr1 206212605 206212817 -36451536 + L2 LINE L2 3065 3312 -1 2129 79 0 108 chr1 206212877 206213218 -36451135 - AluSx SINE Alu -8 304 1 372 316 113 32 chr1 206213513 206213760 -36450593 + L3b LINE CR1 1114 1380 -203 2108 131 3 19 chr1 206215271 206215585 -36448768 + AluSx SINE Alu 1 309 -3 2312 84 17 0 chr1 206216190 206216488 -36447865 - AluSp SINE Alu -10 303 1 1696 214 35 21 chr1 206216606 206217107 -36447246 + L1M4c LINE L1 1197 1703 -4681 1673 178 10 17 chr1 206217111 206217403 -36446950 + AluSx SINE Alu 18 307 -5 2609 156 16 22 chr1 206217425 206217924 -36446429 + L1MB5 LINE L1 5671 6166 -8 2128 131 3 6 chr1 206218483 206218796 -36445557 + AluSx SINE Alu 1 312 0 225 118 0 0 chr1 206219813 206219847 -36444506 + L1MA1 LINE L1 6269 6302 0 1506 175 4 37 chr1 206220217 206220486 -36443867 + AluJo SINE Alu 1 260 -52 2311 110 0 0 chr1 206220501 206220800 -36443553 - AluSx SINE Alu -13 299 1 21 0 0 0 chr1 206220812 206220833 -36443520 + AT_rich Low_complexity Low_complexity 1 21 0 1683 135 9 80 chr1 206221117 206221444 -36442909 - AluJo SINE Alu -8 304 1 24 67 0 0 chr1 206221446 206221491 -36442862 + AT_rich Low_complexity Low_complexity 1 45 0 2132 112 7 7 chr1 206221743 206222046 -36442307 + AluSg1 SINE Alu 1 303 -6 261 188 21 0 chr1 206222124 206222172 -36442181 + MER3 DNA MER1_type 39 87 -122 21 0 0 0 chr1 206222602 206222623 -36441730 + AT_rich Low_complexity Low_complexity 1 21 0 236 335 80 75 chr1 206222701 206222758 -36441595 + L2 LINE L2 2454 2509 -805 554 227 50 17 chr1 206222758 206222877 -36441476 - FLAM_A SINE Alu -10 123 1 236 335 80 75 chr1 206222877 206223007 -36441346 + L2 LINE L2 2509 2642 -672 188 212 0 61 chr1 206223256 206223322 -36441031 + L2 LINE L2 2940 3001 -271 343 129 0 32 chr1 206223350 206223412 -36440941 - Alu SINE Alu 0 302 243 2050 119 0 0 chr1 206223572 206223840 -36440513 + AluSx SINE Alu 1 268 -44 241 300 0 0 chr1 206223924 206223974 -36440379 + L2 LINE L2 3205 3254 -18 2044 102 7 0 chr1 206223974 206224248 -36440105 + AluSx SINE Alu 1 276 -36 22 35 0 0 chr1 206224764 206224793 -36439560 + AT_rich Low_complexity Low_complexity 1 29 0 2176 110 0 10 chr1 206225081 206225371 -36438982 - AluSx SINE Alu -21 291 5 32 26 0 0 chr1 206226004 206226043 -36438310 + AT_rich Low_complexity Low_complexity 1 39 0 2345 87 0 13 chr1 206226782 206227082 -36437271 + AluY SINE Alu 2 297 -14 1514 149 167 0 chr1 206227279 206227567 -36436786 + MER7A DNA MER2_type 1 334 -12 2464 71 0 0 chr1 206227600 206227894 -36436459 - AluSg SINE Alu -16 294 1 2288 78 0 3 chr1 206228600 206228910 -36435443 + AluY SINE Alu 1 309 0 1902 116 83 0 chr1 206229440 206229716 -36434637 - AluSx SINE Alu -13 299 1 343 175 38 0 chr1 206233358 206233438 -36430915 - MIR SINE MIR -119 143 61 1703 173 0 21 chr1 206233836 206234119 -36430234 + AluJo SINE Alu 1 277 -35 2346 74 30 0 chr1 206234305 206234601 -36429752 + AluY SINE Alu 1 305 -6 239 294 44 0 chr1 206234613 206234681 -36429672 - L2 LINE L2 -11 3261 3191 1181 174 31 184 chr1 206235509 206235664 -36428689 + MLT1A1 LTR MaLR 1 64 -301 2130 121 7 0 chr1 206235664 206235961 -36428392 + AluSx SINE Alu 1 299 -13 1181 174 31 184 chr1 206235961 206236191 -36428162 + MLT1A1 LTR MaLR 64 327 -38 392 82 10 194 chr1 206236225 206236323 -36428030 + MLT1A1 LTR MaLR 286 365 0 1050 310 44 25 chr1 206236827 206236942 -36427411 + L1MC4 LINE L1 5255 5366 -2442 1934 152 3 3 chr1 206236942 206237239 -36427114 - AluJb SINE Alu -15 297 1 1050 310 44 25 chr1 206237239 206237733 -36426620 + L1MC4 LINE L1 5366 5876 -1932 232 246 103 12 chr1 206237843 206237930 -36426423 + MLT1L LTR MaLR 4 98 -444 1351 161 56 39 chr1 206238108 206238394 -36425959 - MSTC LTR MaLR -137 291 1 361 201 63 44 chr1 206238546 206238705 -36425648 + L1ME4a LINE L1 5960 6121 0 429 313 113 7 chr1 206238747 206239022 -36425331 - L2 LINE L2 -646 2668 2365 316 348 0 0 chr1 206239305 206239443 -36424910 - L2 LINE L2 -1318 1996 1859 303 283 17 17 chr1 206239518 206239638 -36424715 + L1ME4a LINE L1 5813 5932 -189 290 282 0 0 chr1 206239657 206239742 -36424611 + MIR SINE MIR 16 100 -162 221 146 0 24 chr1 206239762 206239803 -36424550 + MIR SINE MIR 221 260 -2 2380 91 0 3 chr1 206239852 206240150 -36424203 + AluY SINE Alu 1 297 -14 180 0 0 0 chr1 206240150 206240170 -36424183 + (TA)n Simple_repeat Simple_repeat 2 21 0 289 187 0 130 chr1 206240197 206240320 -36424033 + L1ME4a LINE L1 6014 6120 -1 1065 177 92 25 chr1 206240382 206240707 -36423646 - MSTD LTR MaLR -2 394 3 2578 65 0 0 chr1 206240826 206241134 -36423219 - AluY SINE Alu -2 309 2 412 230 0 0 chr1 206242481 206242568 -36421785 + L1MC4 LINE L1 6458 6544 -1498 2317 186 63 35 chr1 206242613 206243133 -36421220 + L1MC4 LINE L1 6529 7063 -979 1374 227 39 36 chr1 206243131 206243590 -36420763 + L1MEc LINE L1 1855 2273 -3942 * 884 259 72 9 chr1 206243590 206243939 -36420414 - L2 LINE L2 -251 3062 2699 2030 142 0 24 chr1 206243956 206244252 -36420101 - AluJo SINE Alu -23 289 1 613 191 19 21 chr1 206244252 206244395 -36419958 - L1ME1 LINE L1 -9 6157 6032 1269 233 34 64 chr1 206244405 206244842 -36419511 - L2 LINE L2 -660 2654 2231 248 298 232 12 chr1 206245173 206245341 -36419012 - L3 LINE CR1 -1 1576 1372 2141 122 20 0 chr1 206245343 206245638 -36418715 + AluSx SINE Alu 2 302 -10 21 36 0 0 chr1 206246666 206246694 -36417659 + AT_rich Low_complexity Low_complexity 1 28 0 357 322 34 0 chr1 206246698 206246816 -36417537 - MER5A DNA MER1_type -50 139 18 262 263 13 0 chr1 206246967 206247043 -36417310 + MIR SINE MIR 186 262 0 232 230 176 0 chr1 206247583 206247657 -36416696 - L2 LINE L2 -1 3312 3226 2291 80 3 29 chr1 206247798 206248110 -36416243 + AluSq SINE Alu 1 304 -9 486 269 53 23 chr1 206248341 206248512 -36415841 + MIR SINE MIR 17 192 -70 2451 52 0 3 chr1 206248538 206248827 -36415526 - AluY SINE Alu -23 288 1 270 81 0 0 chr1 206248827 206248864 -36415489 + (T)n Simple_repeat Simple_repeat 1 37 0 2185 121 0 0 chr1 206249858 206250148 -36414205 + AluSx SINE Alu 1 290 -22 1625 195 89 65 chr1 206250185 206250331 -36414022 + MLT1D LTR MaLR 1 142 -363 1856 151 16 29 chr1 206250331 206250643 -36413710 + AluJb SINE Alu 1 308 -4 1625 195 89 65 chr1 206250643 206250989 -36413364 + MLT1D LTR MaLR 142 505 0 1181 107 117 19 chr1 206251404 206251609 -36412744 - MER6 DNA MER2_type 0 865 641 313 270 0 22 chr1 206251730 206251819 -36412534 + AluSg/x SINE Alu 202 288 -12 1460 221 87 61 chr1 206251856 206252001 -36412352 + MLT1D LTR MaLR 1 141 -364 1829 151 16 29 chr1 206252001 206252313 -36412040 + AluJb SINE Alu 1 308 -4 1460 221 87 61 chr1 206252313 206252659 -36411694 + MLT1D LTR MaLR 141 505 0 3404 140 67 7 chr1 206253074 206253645 -36410708 - MER6A DNA MER2_type 0 605 1 22 35 0 0 chr1 206253656 206253685 -36410668 + AT_rich Low_complexity Low_complexity 1 29 0 1785 148 7 11 chr1 206253685 206254009 -36410344 + AluSx SINE Alu 1 323 0 412 267 73 82 chr1 206254031 206254160 -36410193 + L1MC4a LINE L1 5600 5729 -2079 1859 136 41 0 chr1 206254160 206254454 -36409899 + AluSx SINE Alu 1 306 -6 412 267 73 82 chr1 206254454 206254566 -36409787 + L1MC4a LINE L1 5729 5840 -1968 666 214 23 0 chr1 206254566 206254697 -36409656 + MER94 DNA DNA 1 134 0 412 267 73 82 chr1 206254697 206254769 -36409584 + L1MC4a LINE L1 5840 5911 -1897 225 83 0 0 chr1 206254777 206254813 -36409540 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1618 198 40 38 chr1 206254980 206255353 -36409000 - MLT1A2 LTR MaLR 0 374 1 1140 196 11 60 chr1 206255442 206255723 -36408630 - MLT2B1 LTR ERVL -253 267 1 2065 147 0 0 chr1 206255766 206256078 -36408275 - AluSx SINE Alu 0 312 1 1715 167 25 0 chr1 206257117 206257399 -36406954 - AluJo SINE Alu -23 289 1 1134 111 0 0 chr1 206258431 206258593 -36405760 - AluSq SINE Alu -14 299 138 1041 113 0 0 chr1 206259214 206259347 -36405006 + AluY SINE Alu 1 133 -178 2275 95 0 30 chr1 206259358 206259662 -36404691 + AluSq SINE Alu 1 295 -18 1687 176 27 17 chr1 206260673 206260968 -36403385 - AluJb SINE Alu -14 298 1 989 247 66 34 chr1 206260969 206261378 -36402975 - L1MEc LINE L1 -5001 1395 974 1746 134 16 0 chr1 206261385 206261639 -36402714 - AluSx SINE Alu -13 299 42 263 77 0 0 chr1 206261667 206261706 -36402647 - AluS SINE Alu -226 77 39 560 91 0 0 chr1 206261731 206261808 -36402545 - AluS SINE Alu -236 77 1 2685 264 40 41 chr1 206261812 206262281 -36402072 - L1MEc LINE L1 -5422 974 506 2301 86 20 0 chr1 206262281 206262583 -36401770 - AluSg SINE Alu -2 308 1 2685 264 40 41 chr1 206262583 206263005 -36401348 - L1MEc LINE L1 -5890 506 82 2329 92 0 16 chr1 206263005 206263310 -36401043 + AluSq SINE Alu 1 300 -13 2685 264 40 41 chr1 206263310 206263361 -36400992 - L1MEc LINE L1 -6314 82 32 302 280 29 97 chr1 206263487 206263582 -36400771 - L2 LINE L2 0 3313 3238 216 0 0 0 chr1 206263582 206263606 -36400747 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 302 280 29 97 chr1 206263606 206263717 -36400636 - L2 LINE L2 -75 3238 3121 2108 117 7 0 chr1 206263728 206264019 -36400334 + AluSg SINE Alu 1 293 -17 450 170 32 21 chr1 206264083 206264177 -36400176 + LTR16A1 LTR ERVL 363 457 0 1944 145 64 6 chr1 206264376 206264721 -36399632 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr1 206264986 206265013 -36399340 + (A)n Simple_repeat Simple_repeat 1 27 0 1964 204 11 6 chr1 206265760 206266123 -36398230 - MLT1A1 LTR MaLR 0 365 1 219 315 0 0 chr1 206266171 206266244 -36398109 - MIR SINE MIR -122 140 68 205 255 20 0 chr1 206267772 206267823 -36396530 + MIR3 SINE MIR 151 202 -6 409 343 30 6 chr1 206268738 206268904 -36395449 + MIR SINE MIR 20 189 -73 430 305 50 0 chr1 206269132 206269309 -36395044 + MIR SINE MIR 19 206 -55 2231 140 0 0 chr1 206269459 206269767 -36394586 - AluSx SINE Alu -4 308 1 1967 142 7 3 chr1 206270394 206270696 -36393657 + AluSx SINE Alu 1 303 -9 1092 234 167 44 chr1 206270698 206271033 -36393320 - L1ME4a LINE L1 -4 6117 5825 2242 85 0 44 chr1 206271033 206271349 -36393004 + AluY SINE Alu 1 302 -9 1092 234 167 44 chr1 206271349 206271582 -36392771 - L1ME4a LINE L1 -296 5825 5479 1117 399 0 42 chr1 206272154 206272465 -36391888 - AluSx SINE Alu -4 298 1 2299 45 59 7 chr1 206272470 206272757 -36391596 - AluY SINE Alu -9 302 1 1738 152 32 86 chr1 206272776 206273244 -36391109 - L1MEc LINE L1 -3319 3638 3196 318 149 64 75 chr1 206273291 206273357 -36390996 + L1M4 LINE L1 2272 2338 -3808 3815 81 12 4 chr1 206273357 206273866 -36390487 - LTR10D LTR ERV1 0 513 1 318 149 64 75 chr1 206273866 206273893 -36390460 + L1M4 LINE L1 2338 2364 -3782 904 257 43 72 chr1 206273969 206274175 -36390178 - L1MEc LINE L1 -3919 3219 3008 1901 122 4 14 chr1 206274175 206274489 -36389864 - AluSg SINE Alu 0 315 5 904 257 43 72 chr1 206274489 206274930 -36389423 - L1MEc LINE L1 -4130 3008 2590 441 278 47 50 chr1 206274942 206275284 -36389069 - L1MEc LINE L1 -4436 2702 2362 1094 176 53 33 chr1 206275292 206275536 -36388817 - AluJb SINE Alu -25 287 39 1274 235 180 23 chr1 206275537 206275845 -36388508 - L1MEc LINE L1 -4731 2228 1970 2271 114 0 0 chr1 206275845 206276143 -36388210 - AluSx SINE Alu -14 298 1 1274 235 180 23 chr1 206276143 206276439 -36387914 - L1MEc LINE L1 -4989 1970 1529 4610 241 106 39 chr1 206276964 206277158 -36387195 - L1MEc LINE L1 -5299 1560 1380 1357 84 16 21 chr1 206277158 206277348 -36387005 + MER30B DNA MER1_type 2 190 0 4610 241 106 39 chr1 206277348 206278425 -36385928 - L1MEc LINE L1 -5479 1380 176 5601 117 169 21 chr1 206278425 206278625 -36385728 + Tigger3b DNA MER2_type 1 170 -2858 2267 69 21 3 chr1 206278625 206278913 -36385440 + AluY SINE Alu 2 294 -17 5601 117 169 21 chr1 206278913 206279785 -36384568 + Tigger3b DNA MER2_type 170 1231 0 4610 241 106 39 chr1 206279785 206279974 -36384379 - L1MEc LINE L1 -6683 176 1 337 258 10 10 chr1 206280058 206280155 -36384198 + L1M4 LINE L1 3365 3461 -2685 549 244 92 21 chr1 206280186 206280424 -36383929 + L1M4 LINE L1 3663 3917 -2229 485 324 68 27 chr1 206280428 206280724 -36383629 - L1MEc LINE L1 -6009 387 80 258 248 179 7 chr1 206280832 206280977 -36383376 - L1M LINE L1 -744 5426 5257 491 260 159 63 chr1 206280990 206281532 -36382821 - L1M4 LINE L1 -1131 5015 4422 737 231 87 24 chr1 206281542 206281793 -36382560 + MLT1G LTR MaLR 167 507 -83 1496 176 26 30 chr1 206281871 206281992 -36382361 - AluJo SINE Alu -46 266 146 2059 118 7 23 chr1 206281992 206282296 -36382057 - AluSx SINE Alu -13 299 1 1496 176 26 30 chr1 206282296 206282441 -36381912 - AluJo SINE Alu -166 146 1 288 155 17 0 chr1 206282446 206282504 -36381849 + MLT1G LTR MaLR 483 541 -1 4637 133 40 16 chr1 206283133 206283862 -36380491 + Tigger1 DNA MER2_type 1 746 -1672 499 254 129 35 chr1 206283862 206284094 -36380259 - HAL1 LINE L1 -861 1646 1393 281 262 222 43 chr1 206284154 206284433 -36379920 - HAL1 LINE L1 -1651 856 528 189 298 0 0 chr1 206284843 206284890 -36379463 + MIR SINE MIR 52 98 -110 400 220 169 7 chr1 206284934 206285127 -36379226 + MER112 DNA MER1_type 1 251 -9 1863 99 0 0 chr1 206285164 206285397 -36378956 + AluSg SINE Alu 1 233 -77 22 0 0 0 chr1 206285406 206285428 -36378925 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 206285860 206285887 -36378466 + AT_rich Low_complexity Low_complexity 1 27 0 1779 164 52 6 chr1 206286098 206286428 -36377925 - MER2 DNA MER2_type 0 345 1 2530 79 0 6 chr1 206287067 206287382 -36376971 - AluSq SINE Alu 0 313 1 6983 63 10 46 chr1 206287408 206288401 -36375952 - SVA Other Other 0 1386 430 1417 86 48 83 chr1 206288418 206288813 -36375540 - SVA Other Other -523 863 483 6286 70 21 17 chr1 206288842 206289705 -36374648 - SVA Other Other -520 866 1 319 0 118 0 chr1 206289705 206289756 -36374597 + GA-rich Low_complexity Low_complexity 5 61 0 423 0 0 0 chr1 206290216 206290263 -36374090 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2498 42 0 3 chr1 206290265 206290554 -36373799 - AluY SINE Alu -23 288 1 23 0 0 0 chr1 206290559 206290582 -36373771 + AT_rich Low_complexity Low_complexity 1 23 0 201 162 0 0 chr1 206290729 206290766 -36373587 + A-rich Low_complexity Low_complexity 1 37 0 652 239 65 57 chr1 206291605 206291852 -36372501 - L2 LINE L2 -1 3312 3064 1978 113 4 0 chr1 206291990 206292256 -36372097 - AluSg1 SINE Alu -8 301 35 24 0 0 0 chr1 206292838 206292862 -36371491 + AT_rich Low_complexity Low_complexity 1 24 0 1655 125 89 32 chr1 206293023 206293304 -36371049 - MER7A DNA MER2_type 0 346 52 198 0 0 0 chr1 206293328 206293350 -36371003 + (TC)n Simple_repeat Simple_repeat 1 22 0 1554 167 9 96 chr1 206293354 206293677 -36370676 - AluJo SINE Alu -15 297 3 760 177 38 32 chr1 206293682 206293840 -36370513 - AluJb SINE Alu -18 294 136 2510 72 0 0 chr1 206293869 206294173 -36370180 - AluY SINE Alu -7 304 1 240 273 0 0 chr1 206294174 206294218 -36370135 - MER7A DNA MER2_type -304 44 1 22 35 0 0 chr1 206294266 206294295 -36370058 + AT_rich Low_complexity Low_complexity 1 29 0 1749 239 100 16 chr1 206294615 206295113 -36369240 + MLT1E LTR MaLR 3 542 -51 250 246 14 0 chr1 206295257 206295326 -36369027 + MLT1E LTR MaLR 498 567 0 1781 153 24 24 chr1 206295326 206295621 -36368732 + AluJb SINE Alu 1 295 -17 1766 155 0 33 chr1 206295747 206296050 -36368303 + AluSx SINE Alu 1 293 -19 189 28 139 0 chr1 206296071 206296107 -36368246 + A-rich Low_complexity Low_complexity 5 45 0 191 323 32 40 chr1 206296384 206296508 -36367845 + MIR SINE MIR 75 197 -65 4021 131 46 36 chr1 206296521 206296777 -36367576 + MER50 LTR ERV1 3 255 -479 2132 114 0 44 chr1 206296777 206296947 -36367406 - AluSx SINE Alu -9 303 127 2386 91 0 3 chr1 206296947 206297255 -36367098 - AluSc SINE Alu -2 307 1 191 61 30 0 chr1 206297255 206297288 -36367065 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 2504 62 0 0 chr1 206297294 206297584 -36366769 - AluY SINE Alu -21 290 1 2132 114 0 44 chr1 206297584 206297722 -36366631 - AluSx SINE Alu -189 123 1 4021 131 46 36 chr1 206297722 206298024 -36366329 + MER50 LTR ERV1 255 572 -162 2366 82 0 19 chr1 206298024 206298340 -36366013 - AluY SINE Alu -1 310 1 4021 131 46 36 chr1 206298340 206298482 -36365871 + MER50 LTR ERV1 572 711 -23 1625 177 116 35 chr1 206298600 206298836 -36365517 - MLT1C LTR MaLR -2 465 250 2211 77 0 7 chr1 206298836 206299109 -36365244 - AluSx SINE Alu -5 307 37 1625 177 116 35 chr1 206299109 206299302 -36365051 - MLT1C LTR MaLR -217 250 1 2345 94 0 7 chr1 206299402 206299709 -36364644 + AluSc SINE Alu 1 305 -4 739 186 112 47 chr1 206300322 206300580 -36363773 + ORSL DNA AcHobo 1 275 0 2226 125 3 6 chr1 206300698 206301011 -36363342 + AluSx SINE Alu 1 312 0 1131 161 4 126 chr1 206301531 206301711 -36362642 - MER58A DNA MER1_type -2197 223 23 2421 82 0 0 chr1 206301711 206302005 -36362348 + AluSc SINE Alu 1 294 -15 1131 161 4 126 chr1 206302005 206302016 -36362337 - MER58A DNA MER1_type -2397 23 12 2281 98 3 22 chr1 206302016 206302333 -36362020 + AluSx SINE Alu 1 311 -1 1131 161 4 126 chr1 206302333 206302394 -36361959 - MER58A DNA MER1_type -2408 12 1 2300 106 3 13 chr1 206302554 206302866 -36361487 + AluSx SINE Alu 1 309 -3 30 27 0 0 chr1 206304104 206304141 -36360212 + AT_rich Low_complexity Low_complexity 1 37 0 1369 95 5 5 chr1 206304562 206304752 -36359601 - AluSq SINE Alu -8 305 116 2175 57 8 4 chr1 206305436 206305698 -36358655 - AluSc SINE Alu -9 300 38 3639 243 121 59 chr1 206306243 206307890 -36356463 + L1MA4 LINE L1 10 2528 -5037 2473 62 20 10 chr1 206307890 206308196 -36356157 + AluY SINE Alu 1 309 -2 15420 154 46 34 chr1 206308196 206308639 -36355714 + L1MA4 LINE L1 3214 3650 -4069 2287 123 0 0 chr1 206308639 206308940 -36355413 + AluSx SINE Alu 1 301 -11 15420 154 46 34 chr1 206308940 206309325 -36355028 + L1MA4 LINE L1 3650 4029 -3690 2296 69 0 10 chr1 206309325 206309613 -36354740 + AluY SINE Alu 1 285 -26 15420 154 46 34 chr1 206309613 206310106 -36354247 + L1MA4 LINE L1 4029 4514 -3205 2188 116 10 0 chr1 206310106 206310409 -36353944 + AluSc SINE Alu 1 306 -3 15420 154 46 34 chr1 206310409 206311144 -36353209 + L1MA4 LINE L1 4514 5238 -2481 2223 129 7 0 chr1 206311144 206311453 -36352900 + AluSx SINE Alu 2 312 0 15420 154 46 34 chr1 206311453 206313831 -36350522 + L1MA4 LINE L1 5238 7708 -11 306 292 37 79 chr1 206313990 206314206 -36350147 - L2 LINE L2 -4 3309 3103 2201 122 0 0 chr1 206314749 206315045 -36349308 + AluSx SINE Alu 1 296 -16 251 178 78 78 chr1 206315991 206316081 -36348272 + Charlie7 DNA MER1_type 16 105 -2507 * 434 208 75 23 chr1 206316066 206316239 -36348114 + Charlie7 DNA MER1_type 2431 2612 0 2385 126 54 42 chr1 206317896 206318094 -36346259 + Tigger2a DNA MER2_type 1 195 -2513 2282 98 17 0 chr1 206318094 206318389 -36345964 - AluY SINE Alu -11 300 1 2385 126 54 42 chr1 206318389 206318619 -36345734 + Tigger2a DNA MER2_type 195 434 0 251 330 121 9 chr1 206319395 206319741 -36344612 - L1M4 LINE L1 -812 5334 4950 356 369 44 22 chr1 206319863 206320088 -36344265 - L1M4 LINE L1 -1350 4796 4567 516 317 111 31 chr1 206320231 206320581 -36343772 - L1M4 LINE L1 -3529 2617 2240 491 106 21 42 chr1 206320819 206320961 -36343392 + (CA)n Simple_repeat Simple_repeat 1 139 0 237 305 42 58 chr1 206320988 206321178 -36343175 + MLT1J LTR MaLR 325 511 0 2110 92 0 16 chr1 206321203 206321506 -36342847 - AluY SINE Alu -13 298 1 227 242 63 53 chr1 206322718 206322813 -36341540 - HAL1 LINE L1 -1601 906 811 254 323 60 48 chr1 206323964 206324131 -36340222 + MER5A DNA MER1_type 20 188 -1 292 250 0 0 chr1 206326514 206326594 -36337759 + A-rich Low_complexity Low_complexity 1 80 0 2416 67 3 3 chr1 206326938 206327251 -36337102 + AluSp SINE Alu 1 313 0 430 304 37 78 chr1 206327254 206327471 -36336882 + L2 LINE L2 3028 3235 -37 1754 194 42 19 chr1 206327583 206327960 -36336393 + MLT1B LTR MaLR 1 386 -4 678 277 40 20 chr1 206328119 206328321 -36336032 + L1ME LINE L1 145 350 -5855 968 253 75 64 chr1 206328358 206328886 -36335467 + L1ME LINE L1 428 967 -5238 713 199 13 13 chr1 206328886 206329042 -36335311 + L1MB3 LINE L1 6025 6180 -3 968 253 75 64 chr1 206329042 206329217 -36335136 + L1ME LINE L1 967 1139 -5066 2217 93 0 7 chr1 206329313 206329614 -36334739 + AluSc SINE Alu 5 303 -6 44088 47 3 1 chr1 206329632 206335755 -36328598 + L1PA5 LINE L1 11 6146 -8 1091 247 103 43 chr1 206335766 206335963 -36328390 + L1ME LINE L1 1289 1473 -4923 387 0 0 0 chr1 206335963 206336006 -36328347 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1091 247 103 43 chr1 206336006 206336392 -36327961 + L1ME LINE L1 1473 1907 -4489 610 212 47 42 chr1 206336394 206336606 -36327747 + L1ME LINE L1 2161 2373 -4023 21 36 0 0 chr1 206336619 206336647 -36327706 + AT_rich Low_complexity Low_complexity 1 28 0 561 350 37 5 chr1 206337037 206337254 -36327099 + MIR SINE MIR 13 236 -26 181 294 0 59 chr1 206337405 206337473 -36326880 + L2 LINE L2 3250 3313 0 238 287 257 37 chr1 206338384 206338520 -36325833 - MIR3 SINE MIR -23 185 20 660 119 0 20 chr1 206338619 206338720 -36325633 - AluJo/FRAM SINE Alu -17 295 197 1728 151 0 7 chr1 206338720 206338998 -36325355 - AluJb SINE Alu -36 276 1 2094 116 0 3 chr1 206339006 206339300 -36325053 - AluSq SINE Alu -20 293 1 2392 150 27 42 chr1 206340217 206340998 -36323355 - L1MB7 LINE L1 -15 6169 5165 1909 137 4 0 chr1 206340998 206341276 -36323077 - AluSx SINE Alu -33 279 1 2392 150 27 42 chr1 206341276 206341320 -36323033 - L1MB7 LINE L1 -1019 5165 5122 1911 142 7 7 chr1 206341889 206342185 -36322168 - AluSx SINE Alu -16 296 1 2421 75 0 0 chr1 206342420 206342728 -36321625 - AluY SINE Alu -3 308 1 265 163 70 0 chr1 206343040 206343083 -36321270 - AluSg/x SINE Alu -123 177 132 1824 116 6 70 chr1 206343083 206343412 -36320941 - AluSx SINE Alu -4 308 1 273 290 32 75 chr1 206343608 206343794 -36320559 - L2 LINE L2 -54 3259 3082 476 265 109 20 chr1 206343986 206344174 -36320179 + MIR SINE MIR 7 210 -52 1087 175 0 0 chr1 206344188 206344365 -36319988 + AluJo SINE Alu 9 185 -127 225 0 0 0 chr1 206344426 206344451 -36319902 + (A)n Simple_repeat Simple_repeat 1 25 0 212 189 0 0 chr1 206344505 206344542 -36319811 + (TTA)n Simple_repeat Simple_repeat 1 37 0 1867 144 10 0 chr1 206344555 206344847 -36319506 + AluSx SINE Alu 1 295 -17 2476 165 27 47 chr1 206345310 206345825 -36318528 + MLT1D LTR MaLR 1 505 0 664 174 0 0 chr1 206345968 206346077 -36318276 - FLAM_C SINE Alu -10 133 25 955 99 8 0 chr1 206346113 206346244 -36318109 + AluSq/x SINE Alu 1 132 -180 230 54 0 27 chr1 206346473 206346510 -36317843 + (TA)n Simple_repeat Simple_repeat 2 37 0 1835 132 20 3 chr1 206346510 206346806 -36317547 - AluSx SINE Alu -11 301 1 2436 74 0 0 chr1 206347142 206347452 -36316901 - AluY SINE Alu -1 310 1 255 294 49 29 chr1 206347459 206347561 -36316792 - L2 LINE L2 0 3313 3210 256 288 0 25 chr1 206347588 206347659 -36316694 + MLT1H1 LTR MaLR 20 90 -452 2219 103 7 0 chr1 206347659 206347969 -36316384 - AluSq SINE Alu -1 312 1 474 214 151 111 chr1 206348063 206348413 -36315940 + MLT1H1 LTR MaLR 187 550 -5 376 370 56 12 chr1 206349137 206349299 -36315054 + L2 LINE L2 3104 3272 0 186 241 37 0 chr1 206349370 206349424 -36314929 - MIR SINE MIR -4 258 203 292 365 19 0 chr1 206350180 206350284 -36314069 + MIR SINE MIR 47 152 -110 743 194 78 109 chr1 206350400 206350684 -36313669 + ORSL DNA AcHobo 1 275 0 2405 236 64 23 chr1 206350981 206351197 -36313156 - L2 LINE L2 -5 3308 3102 2174 94 7 3 chr1 206351197 206351494 -36312859 + AluSx SINE Alu 1 298 -14 2405 236 64 23 chr1 206351494 206352221 -36312132 - L2 LINE L2 -211 3102 2322 554 308 28 32 chr1 206352221 206352471 -36311882 - LTR16A1 LTR ERVL -208 249 1 1087 336 48 47 chr1 206352620 206353351 -36311002 - ERVL LTR ERVL -388 5376 4645 6902 90 20 48 chr1 206353362 206354539 -36309814 - L1MA3 LINE L1 0 6305 5163 839 150 0 14 chr1 206354542 206354682 -36309671 - FLAM_C SINE Alu 0 143 6 5239 132 14 29 chr1 206354686 206354856 -36309497 - L1MA3 LINE L1 -973 5173 5002 2034 105 10 13 chr1 206354856 206355161 -36309192 - AluSx SINE Alu -8 304 1 5239 132 14 29 chr1 206355161 206355923 -36308430 - L1MA3 LINE L1 -1144 5002 4255 533 344 70 0 chr1 206355927 206356154 -36308199 - ERVL LTR ERVL -867 4618 4376 2383 145 45 5 chr1 206356183 206356604 -36307749 - L1MD2 LINE L1 -2 6357 5920 4938 110 16 30 chr1 206356613 206357287 -36307066 - L1PA13 LINE L1 -11 6152 5489 2223 101 7 0 chr1 206357287 206357594 -36306759 - AluSp SINE Alu -4 309 1 4938 110 16 30 chr1 206357594 206357690 -36306663 - L1PA13 LINE L1 -674 5489 5393 280 81 0 0 chr1 206357690 206357727 -36306626 - AluSg SINE Alu -10 290 254 1290 140 0 0 chr1 206357727 206357913 -36306440 - AluSg SINE Alu -124 186 1 3838 159 45 16 chr1 206357950 206358791 -36305562 - L1MD2 LINE L1 -440 5919 5053 2034 134 0 10 chr1 206358791 206359098 -36305255 - AluSx SINE Alu -8 304 1 3838 159 45 16 chr1 206359098 206359171 -36305182 - L1MD2 LINE L1 -1306 5053 4984 526 356 11 0 chr1 206359188 206359368 -36304985 - ERVL LTR ERVL -1368 4396 4215 829 259 119 14 chr1 206359504 206359848 -36304505 - ERVL LTR ERVL -1717 3937 3558 414 253 56 5 chr1 206359864 206360055 -36304298 - MLT1G LTR MaLR -354 195 1 1092 260 73 57 chr1 206360055 206360586 -36303767 - L1MEc LINE L1 -5831 565 26 2011 123 0 0 chr1 206360602 206360918 -36303435 + AluSx SINE Alu 1 316 0 1600 255 28 19 chr1 206360918 206361346 -36303007 - L2 LINE L2 -794 2520 2089 268 271 90 7 chr1 206361899 206362043 -36302310 + L1MC/D LINE L1 5662 5817 -339 1491 146 23 63 chr1 206362091 206362393 -36301960 - AluJo SINE Alu -21 291 2 1115 288 138 52 chr1 206362477 206363346 -36301007 - L2 LINE L2 -1189 2125 1182 2058 129 3 3 chr1 206363366 206363675 -36300678 + AluSx SINE Alu 1 309 -3 2192 82 3 16 chr1 206363684 206363989 -36300364 + AluSp SINE Alu 1 301 -12 2338 54 3 3 chr1 206364626 206364923 -36299430 + AluY SINE Alu 1 297 -14 210 256 68 86 chr1 206365303 206365368 -36298985 + MIR3 SINE MIR 93 157 -51 2384 55 0 13 chr1 206365368 206365676 -36298677 - AluY SINE Alu -7 304 1 210 256 68 86 chr1 206365676 206365727 -36298626 + MIR3 SINE MIR 157 207 -1 292 211 79 26 chr1 206365894 206365970 -36298383 + MIR3 SINE MIR 117 196 -12 227 229 301 12 chr1 206366007 206366090 -36298263 - L2 LINE L2 -12 3260 3154 889 245 49 0 chr1 206366279 206366483 -36297870 + MIR SINE MIR 34 247 -15 742 159 0 92 chr1 206366766 206366815 -36297538 + AluJo SINE Alu 2 54 -258 3307 78 0 37 chr1 206366815 206367167 -36297186 - MLT2A1 LTR ERVL 0 444 111 2388 70 0 0 chr1 206367167 206367467 -36296886 - AluYa5 SINE Alu -11 300 1 3307 78 0 37 chr1 206367467 206367575 -36296778 - MLT2A1 LTR ERVL -333 111 1 742 159 0 92 chr1 206367575 206367688 -36296665 + AluJo SINE Alu 54 149 -163 313 253 23 23 chr1 206367689 206367776 -36296577 + AluJo SINE Alu 89 175 -127 810 217 12 18 chr1 206367779 206367945 -36296408 - FRAM SINE Alu 0 166 2 1230 71 0 0 chr1 206367951 206368106 -36296247 - AluSp SINE Alu -12 301 147 2054 110 0 10 chr1 206368354 206368644 -36295709 - AluSx SINE Alu -21 291 5 32 26 0 0 chr1 206369278 206369317 -36295036 + AT_rich Low_complexity Low_complexity 1 39 0 2360 87 0 13 chr1 206370056 206370356 -36293997 + AluY SINE Alu 2 297 -14 1422 146 167 0 chr1 206370553 206370841 -36293512 + MER7A DNA MER2_type 1 334 -12 2398 87 0 7 chr1 206370874 206371172 -36293181 - AluSx SINE Alu -16 296 1 479 279 117 93 chr1 206371287 206371384 -36292969 - L2 LINE L2 0 3272 3179 2312 125 18 12 chr1 206371384 206371719 -36292634 + MER1B DNA MER1_type 1 337 0 479 279 117 93 chr1 206371719 206372041 -36292312 - L2 LINE L2 -93 3179 2843 * 672 282 146 51 chr1 206372024 206372531 -36291822 - L2 LINE L2 -825 2489 1935 281 247 43 21 chr1 206373119 206373212 -36291141 - MIR SINE MIR -71 191 97 2274 177 29 18 chr1 206373225 206373678 -36290675 - MLT1C LTR MaLR -9 458 1 251 349 12 12 chr1 206373678 206373764 -36290589 - MIR SINE MIR -164 98 13 189 240 40 0 chr1 206373962 206374012 -36290341 + MIR SINE MIR 103 154 -108 2411 110 0 0 chr1 206374369 206374678 -36289675 + AluSq SINE Alu 1 309 -4 839 272 23 2 chr1 206375324 206375561 -36288792 - MIR SINE MIR 0 262 24 308 308 83 8 chr1 206377707 206377840 -36286513 - MIR SINE MIR -5 257 115 289 208 0 0 chr1 206378510 206378563 -36285790 + L2 LINE L2 3261 3313 0 315 175 48 0 chr1 206378679 206378742 -36285611 - MIR3 SINE MIR -3 205 140 261 269 19 65 chr1 206378843 206378951 -36285402 - L2 LINE L2 -47 3266 3164 * 1397 238 33 46 chr1 206378945 206379220 -36285133 + L2 LINE L2 1783 2060 -1254 3144 146 17 37 chr1 206379220 206379421 -36284932 + LTR26B LTR ERV1 1 205 -326 2270 94 0 45 chr1 206379421 206379729 -36284624 + AluSq SINE Alu 1 294 -19 3144 146 17 37 chr1 206379729 206380069 -36284284 + LTR26B LTR ERV1 205 531 0 1397 238 33 46 chr1 206380069 206380145 -36284208 + L2 LINE L2 2060 2135 -1179 2070 141 0 16 chr1 206380145 206380458 -36283895 - AluSx SINE Alu -4 308 1 1397 238 33 46 chr1 206380458 206380563 -36283790 + L2 LINE L2 2135 2234 -1080 947 123 61 6 chr1 206380571 206380734 -36283619 + MLT1C LTR MaLR 10 181 -286 370 252 69 23 chr1 206380776 206380907 -36283446 - L2 LINE L2 -258 3055 2919 2615 127 53 32 chr1 206380953 206381425 -36282928 - LTR8A LTR ERV1 0 727 246 650 264 167 18 chr1 206381417 206381592 -36282761 + LTR33A LTR ERVL 122 270 -253 * 2424 97 0 3 chr1 206381592 206381901 -36282452 + AluSp SINE Alu 2 309 -4 650 264 167 18 chr1 206381901 206382054 -36282299 + LTR33A LTR ERVL 270 499 -24 1210 70 13 0 chr1 206382054 206382210 -36282143 + L1PA10 LINE L1 6007 6164 -4 187 250 155 43 chr1 206382360 206382476 -36281877 + L3 LINE CR1 1288 1416 -161 441 271 206 5 chr1 206382816 206383015 -36281338 + MIR SINE MIR 3 241 -21 * 2017 230 103 6 chr1 206383010 206383524 -36280829 + L2 LINE L2 2065 2628 -686 738 223 122 75 chr1 206383566 206384082 -36280271 + MER41D LTR ERV1 1 557 0 553 235 25 117 chr1 206384103 206384514 -36279839 + MER41D-int LTR ERV1 21 1028 -5819 2174 107 4 0 chr1 206384643 206384952 -36279401 - AluSx SINE Alu 0 310 1 19600 212 38 52 chr1 206385039 206385315 -36279038 + MER41C-int LTR ERV1 663 941 -6815 852 137 0 58 chr1 206385315 206385454 -36278899 + FLAM_C SINE Alu 1 131 -2 19600 212 38 52 chr1 206385454 206387391 -36276962 + MER41C-int LTR ERV1 941 2904 -4852 568 138 0 0 chr1 206387391 206387478 -36276875 - AluSc SINE Alu -3 306 220 19600 212 38 52 chr1 206387478 206388361 -36275992 + MER41C-int LTR ERV1 2904 3798 -3958 1770 164 10 32 chr1 206388361 206388672 -36275681 - AluJo SINE Alu -8 304 1 19600 212 38 52 chr1 206388672 206389595 -36274758 + MER41C-int LTR ERV1 3798 4689 -3067 2287 105 19 29 chr1 206389595 206389910 -36274443 + AluSx SINE Alu 1 312 0 19600 212 38 52 chr1 206389910 206390759 -36273594 + MER41C-int LTR ERV1 4689 5549 -2207 11470 198 33 15 chr1 206390762 206392433 -36271920 + MER41C-int LTR ERV1 5335 7065 -691 1289 197 45 91 chr1 206392433 206392905 -36271448 - LTR7 LTR ERV1 0 450 1 11470 198 33 15 chr1 206392905 206393607 -36270746 + MER41C-int LTR ERV1 7065 7752 -4 515 236 63 8 chr1 206393611 206393738 -36270615 + MER41C LTR ERV1 1 134 -420 448 227 42 0 chr1 206394016 206394135 -36270218 + MER41D LTR ERV1 432 555 -2 861 265 129 60 chr1 206394143 206394433 -36269920 + L2 LINE L2 2752 3020 -293 1904 131 19 32 chr1 206394433 206394745 -36269608 + AluSx SINE Alu 3 310 -2 861 265 129 60 chr1 206394745 206394958 -36269395 + L2 LINE L2 3020 3313 0 25 31 0 0 chr1 206395459 206395491 -36268862 + GC_rich Low_complexity Low_complexity 1 32 0 33 25 0 0 chr1 206395735 206395775 -36268578 + GC_rich Low_complexity Low_complexity 1 40 0 311 141 254 0 chr1 206396414 206396485 -36267868 - MIR3 SINE MIR -3 205 117 1181 218 224 50 chr1 206396780 206397258 -36267095 + MER68 LTR ERV1 2 562 0 192 147 0 0 chr1 206397314 206397348 -36267005 - L2 LINE L2 -1364 1950 1917 348 250 42 0 chr1 206397543 206397639 -36266714 - MER94 DNA DNA -20 114 15 292 263 164 0 chr1 206397645 206397746 -36266607 + MIR SINE MIR 45 160 -48 390 203 14 0 chr1 206397786 206397855 -36266498 - Tigger2a DNA MER2_type 0 444 375 806 199 19 0 chr1 206397855 206398011 -36266342 - FAM SINE Alu -14 171 13 1860 103 105 40 chr1 206398014 206398049 -36266304 - Tigger2a DNA MER2_type -2333 375 344 1915 170 10 0 chr1 206398049 206398355 -36265998 - AluJo SINE Alu -3 309 1 1860 103 105 40 chr1 206398355 206398670 -36265683 - Tigger2a DNA MER2_type -2364 344 2 764 201 189 69 chr1 206398670 206398818 -36265535 - MLT2C1 LTR ERVL -42 355 226 2347 107 0 0 chr1 206398818 206399118 -36265235 - AluSg1 SINE Alu -9 300 1 764 201 189 69 chr1 206399118 206399286 -36265067 - MLT2C1 LTR ERVL -171 226 1 910 122 0 43 chr1 206399311 206399450 -36264903 + FLAM_C SINE Alu 1 133 0 227 203 31 156 chr1 206399452 206399580 -36264773 + MIR SINE MIR 151 262 0 1060 230 28 79 chr1 206399624 206399980 -36264373 + MER46C DNA MER2_type 1 338 0 915 124 0 29 chr1 206400382 206400519 -36263834 + FLAM_C SINE Alu 1 133 0 468 303 48 7 chr1 206400881 206401026 -36263327 + MIR SINE MIR 20 170 -92 403 149 0 0 chr1 206401027 206401094 -36263259 - Alu SINE Alu -6 305 239 2161 98 52 0 chr1 206401128 206401415 -36262938 - AluSx SINE Alu -10 302 1 2275 92 0 30 chr1 206401762 206402065 -36262288 + AluSp SINE Alu 2 295 -18 1972 110 3 73 chr1 206402073 206402390 -36261963 + AluSx SINE Alu 2 296 -16 2432 115 0 0 chr1 206402480 206402792 -36261561 + AluSx SINE Alu 1 312 0 21 36 0 0 chr1 206402854 206402882 -36261471 + AT_rich Low_complexity Low_complexity 1 28 0 347 204 21 32 chr1 206403230 206403323 -36261030 + MIR SINE MIR 79 170 -92 324 306 39 67 chr1 206403851 206404014 -36260339 + L1ME4a LINE L1 5650 5805 -316 2307 89 0 3 chr1 206404014 206404306 -36260047 + AluSq SINE Alu 2 292 -21 324 306 39 67 chr1 206404306 206404397 -36259956 + L1ME4a LINE L1 5805 5897 -224 2275 112 0 0 chr1 206404527 206404822 -36259531 - AluSx SINE Alu -17 295 1 2183 96 3 7 chr1 206405240 206405551 -36258802 - AluSg1 SINE Alu 0 310 1 198 342 63 0 chr1 206405625 206405704 -36258649 + L2 LINE L2 2715 2798 -516 1929 138 61 10 chr1 206405903 206406200 -36258153 - AluSx SINE Alu 0 312 1 1966 137 13 26 chr1 206406272 206406578 -36257775 + AluJb SINE Alu 1 302 -10 450 0 0 0 chr1 206407029 206407079 -36257274 + (TG)n Simple_repeat Simple_repeat 2 51 0 2232 125 0 0 chr1 206407483 206407778 -36256575 + AluSx SINE Alu 1 295 -17 296 216 134 10 chr1 206408768 206408865 -36255488 + L1ME4a LINE L1 6013 6121 0 518 194 141 84 chr1 206409224 206409415 -36254938 + MER20 DNA MER1_type 18 219 0 360 303 28 45 chr1 206409511 206409689 -36254664 - MER5A DNA MER1_type -12 177 3 215 300 223 23 chr1 206410476 206410606 -36253747 + L2 LINE L2 2994 3149 -123 1225 175 38 0 chr1 206411304 206411515 -36252838 + AluJo SINE Alu 2 220 -92 498 140 32 54 chr1 206411533 206411626 -36252727 - MER81 DNA DNA -4 110 20 186 286 0 63 chr1 206411779 206411842 -36252511 + L2 LINE L2 3204 3262 -10 2190 87 4 4 chr1 206412118 206412394 -36251959 + AluSx SINE Alu 1 276 -36 288 0 0 0 chr1 206412397 206412429 -36251924 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 413 306 30 34 chr1 206413321 206413556 -36250797 + LTR16C LTR ERVL 258 491 0 249 255 43 112 chr1 206413659 206413820 -36250533 - MLT1F LTR MaLR -2 588 439 254 221 78 0 chr1 206413839 206413916 -36250437 - MLT1F LTR MaLR -217 325 243 585 314 39 15 chr1 206414171 206414375 -36249978 + MIR SINE MIR 21 229 -33 466 297 159 40 chr1 206414952 206415228 -36249125 + L2 LINE L2 2925 3233 -39 246 81 0 0 chr1 206416925 206416962 -36247391 + (TG)n Simple_repeat Simple_repeat 2 38 0 1844 131 35 0 chr1 206416964 206417223 -36247130 - AluSx SINE Alu -44 268 1 207 0 0 0 chr1 206417232 206417255 -36247098 + (T)n Simple_repeat Simple_repeat 1 23 0 741 167 37 43 chr1 206417787 206417949 -36246404 + LTR54 LTR ERV1 1 161 -349 819 215 29 5 chr1 206417986 206418195 -36246158 + LTR54 LTR ERV1 297 510 0 726 234 164 9 chr1 206418975 206419201 -36245152 - MIR SINE MIR 0 262 2 262 300 88 0 chr1 206419211 206419291 -36245062 - MER5B DNA MER1_type -75 103 17 302 296 157 0 chr1 206419636 206419751 -36244602 - L2 LINE L2 -4 3268 3136 863 218 211 21 chr1 206420368 206420783 -36243570 + LTR50 LTR ERVL 44 628 -167 184 259 37 0 chr1 206421424 206421478 -36242875 - L2 LINE L2 -16 3256 3201 3694 128 6 22 chr1 206421735 206422366 -36241987 - L1MA10 LINE L1 -4 6330 5710 303 260 14 0 chr1 206423502 206423575 -36240778 - MIR SINE MIR -108 154 81 261 301 26 12 chr1 206423726 206423830 -36240523 - MER5B DNA MER1_type -2 176 81 2927 219 28 25 chr1 206423853 206424193 -36240160 + MER82 DNA MER2_type 2 346 -307 2353 91 0 3 chr1 206424193 206424511 -36239842 - L1PB1 LINE L1 0 6151 5835 2927 219 28 25 chr1 206424511 206424820 -36239533 + MER82 DNA MER2_type 346 653 0 464 195 0 0 chr1 206425951 206426038 -36238315 + MER82 DNA MER2_type 240 326 -327 390 173 0 0 chr1 206427146 206427221 -36237132 + (TG)n Simple_repeat Simple_repeat 1 75 0 219 273 114 0 chr1 206428101 206428189 -36236164 + MIR SINE MIR 20 117 -145 1495 133 99 128 chr1 206428450 206428528 -36235825 - MSTB1 LTR MaLR 0 432 353 2128 133 0 3 chr1 206428528 206428821 -36235532 + AluSx SINE Alu 1 292 -20 1495 133 99 128 chr1 206428821 206429187 -36235166 - MSTB1 LTR MaLR -79 353 1 248 223 29 68 chr1 206430608 206430711 -36233642 + LTR33 LTR ERVL 200 298 -223 210 242 129 0 chr1 206430848 206430910 -36233443 + MIR SINE MIR 14 83 -179 898 124 0 0 chr1 206431185 206431314 -36233039 - AluSg/x SINE Alu -2 310 182 215 298 165 25 chr1 206431337 206431458 -36232895 + MIR SINE MIR 78 215 -47 284 291 35 0 chr1 206433397 206433483 -36230870 + MLT1K LTR MaLR 500 588 0 2201 104 0 3 chr1 206434031 206434349 -36230004 + AluSx SINE Alu 1 317 0 521 293 102 0 chr1 206434355 206434512 -36229841 + MIR3 SINE MIR 30 202 -6 609 351 81 7 chr1 206434703 206435011 -36229342 - L1ME4a LINE L1 -11 6110 5780 760 323 17 4 chr1 206435541 206435773 -36228580 + MIR SINE MIR 3 237 -25 216 294 135 8 chr1 206435886 206436012 -36228341 + L2 LINE L2 3149 3290 -23 776 216 64 6 chr1 206436800 206436971 -36227382 - MIR SINE MIR -21 241 61 1788 173 46 71 chr1 206436989 206437353 -36227000 + MSTC LTR MaLR 1 354 -74 1662 76 0 0 chr1 206437353 206437550 -36226803 - AluY SINE Alu -114 197 1 1788 173 46 71 chr1 206437550 206437624 -36226729 + MSTC LTR MaLR 354 428 0 445 219 89 0 chr1 206437668 206437791 -36226562 - MIR SINE MIR -59 203 70 180 245 113 0 chr1 206438216 206438269 -36226084 - MIR3 SINE MIR -6 202 144 277 251 101 134 chr1 206439215 206439335 -36225018 - MIR SINE MIR -2 260 146 2456 96 0 3 chr1 206439335 206439648 -36224705 - AluSq SINE Alu -1 312 1 277 251 101 134 chr1 206439648 206439706 -36224647 - MIR SINE MIR -116 146 88 328 328 57 25 chr1 206439710 206439832 -36224521 + L2 LINE L2 3188 3313 0 207 0 0 0 chr1 206440150 206440173 -36224180 + (A)n Simple_repeat Simple_repeat 1 23 0 1994 70 92 11 chr1 206440735 206441008 -36223345 - AluY SINE Alu -16 295 1 343 287 222 26 chr1 206441437 206441667 -36222686 + L3b LINE CR1 1236 1510 -73 560 150 70 0 chr1 206441686 206441786 -36222567 + MER5A DNA MER1_type 4 110 -79 2365 75 0 14 chr1 206441791 206442086 -36222267 + AluY SINE Alu 1 291 -20 3671 62 7 0 chr1 206442173 206442623 -36221730 + MLT2A2 LTR ERVL 1 453 0 1387 155 83 114 chr1 206443264 206443650 -36220703 - MLT1A2 LTR MaLR 0 374 1 541 266 176 52 chr1 206443915 206444148 -36220205 + MIR SINE MIR 1 262 0 610 295 35 71 chr1 206444939 206445193 -36219160 + L2 LINE L2 3027 3271 -1 195 100 0 0 chr1 206445218 206445248 -36219105 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2383 101 0 0 chr1 206445250 206445558 -36218795 + AluY SINE Alu 1 308 -3 249 253 133 0 chr1 206447104 206447187 -36217166 - L2 LINE L2 -5 3267 3174 344 243 54 109 chr1 206447378 206447456 -36216897 + L1MC4 LINE L1 7600 7681 -361 1076 162 31 0 chr1 206447456 206447647 -36216706 + L1PB3 LINE L1 5951 6147 -7 344 243 54 109 chr1 206447647 206447881 -36216472 + L1MC4 LINE L1 7681 7895 -147 312 229 16 0 chr1 206448005 206448066 -36216287 - L2 LINE L2 0 3313 3252 2189 90 10 55 chr1 206448261 206448571 -36215782 + AluSc SINE Alu 1 296 -13 197 273 36 55 chr1 206448591 206448701 -36215652 + L2 LINE L2 2813 2920 -352 1888 158 0 10 chr1 206449057 206449354 -36214999 - AluSx SINE Alu -16 296 3 2307 117 0 3 chr1 206449622 206449922 -36214431 - AluSx SINE Alu -11 301 3 245 289 97 9 chr1 206450048 206450276 -36214077 - L1M4 LINE L1 -1899 4247 4000 313 277 36 0 chr1 206450613 206450696 -36213657 - L2 LINE L2 0 3272 3187 2132 128 0 10 chr1 206450696 206451009 -36213344 + AluY SINE Alu 1 310 -1 345 189 147 21 chr1 206451029 206451124 -36213229 + MIR SINE MIR 136 242 -20 627 264 84 8 chr1 206451130 206451346 -36213007 + MIR SINE MIR 2 227 -35 2239 111 0 10 chr1 206451375 206451681 -36212672 + AluSc SINE Alu 6 308 -1 310 204 97 29 chr1 206452483 206452586 -36211767 - HAL1b LINE L1 -24 1324 1215 400 216 82 21 chr1 206452704 206452801 -36211552 + MIR SINE MIR 43 145 -63 2191 98 0 0 chr1 206452808 206453083 -36211270 + AluSx SINE Alu 1 275 -37 209 81 0 27 chr1 206453088 206453125 -36211228 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 655 356 20 8 chr1 206454829 206455076 -36209277 - MIR SINE MIR -1 261 12 563 117 0 222 chr1 206455413 206455584 -36208769 + FLAM_C SINE Alu 1 133 0 810 153 0 29 chr1 206455844 206455981 -36208372 + FLAM_C SINE Alu 1 133 0 409 173 27 135 chr1 206456268 206456453 -36207900 + MER112 DNA MER1_type 6 170 -90 264 238 40 27 chr1 206456931 206457058 -36207295 + MIR SINE MIR 6 176 -86 7104 47 10 5 chr1 206457557 206458912 -36205441 - L1PA6 LINE L1 0 6154 4797 1865 145 50 7 chr1 206459440 206459737 -36204616 - AluJb SINE Alu -2 310 1 1100 172 0 0 chr1 206459737 206459900 -36204453 - FRAM SINE Alu -13 163 1 1785 147 139 29 chr1 206459901 206460310 -36204043 - LTR54B LTR ERV1 -44 454 1 390 264 31 31 chr1 206460364 206460493 -36203860 - LTR67 LTR ERVL 0 557 429 440 205 0 24 chr1 206460618 206460701 -36203652 - AluJb SINE Alu -83 229 149 1145 157 0 0 chr1 206461334 206461506 -36202847 + AluJb SINE Alu 138 309 -3 442 209 158 7 chr1 206461765 206461904 -36202449 - MER53 DNA DNA -4 185 26 422 152 27 98 chr1 206461909 206462021 -36202332 + MER21B LTR ERV1 1 104 -759 * 1411 271 61 21 chr1 206462019 206462395 -36201958 + MER21B LTR ERV1 20 498 -433 584 149 11 0 chr1 206462437 206462531 -36201822 - FLAM_A SINE Alu -20 122 28 1432 211 83 17 chr1 206462542 206462903 -36201450 + MER21B LTR ERV1 427 811 -52 233 62 0 0 chr1 206462933 206462965 -36201388 - MER53 DNA DNA -156 33 2 2190 140 0 9 chr1 206463008 206463323 -36201030 + AluSx SINE Alu 1 312 0 2008 105 44 24 chr1 206463542 206463836 -36200517 - AluSx SINE Alu -12 300 1 245 325 53 44 chr1 206463850 206464056 -36200297 - L2 LINE L2 -20 3252 3045 2181 133 0 0 chr1 206465450 206465752 -36198601 + AluSq SINE Alu 1 302 -11 253 306 33 16 chr1 206466071 206466192 -36198161 + LTR33 LTR ERVL 393 515 -6 489 266 32 27 chr1 206466248 206466330 -36198023 + MER112 DNA MER1_type 66 146 -114 2202 127 7 0 chr1 206466330 206466630 -36197723 - AluSq SINE Alu -11 302 1 489 266 32 27 chr1 206466630 206466735 -36197618 + MER112 DNA MER1_type 146 254 -6 545 316 32 11 chr1 206467527 206467717 -36196636 - MIR SINE MIR -14 248 54 932 162 0 36 chr1 206468864 206468881 -36195472 - FRAM SINE Alu -146 166 150 337 100 0 0 chr1 206468881 206468941 -36195412 - L1MA7 LINE L1 0 6291 6232 932 162 0 36 chr1 206468941 206469090 -36195263 - FRAM SINE Alu -162 150 6 271 95 24 0 chr1 206469094 206469136 -36195217 - L1MA6 LINE L1 -46 6254 6212 2387 85 3 0 chr1 206469553 206469846 -36194507 - AluSp SINE Alu -17 296 3 210 342 79 26 chr1 206471268 206471382 -36192971 - L2 LINE L2 -15 3298 3179 838 232 37 16 chr1 206471495 206471685 -36192668 + MIR SINE MIR 56 249 -13 269 344 43 0 chr1 206473447 206473540 -36190813 + MIR SINE MIR 50 146 -116 627 241 58 122 chr1 206473692 206474160 -36190193 + MLT1J LTR MaLR 1 438 -73 682 230 25 12 chr1 206474323 206474484 -36189869 + L1MC4a LINE L1 5640 5802 -2006 1250 176 13 88 chr1 206474484 206474577 -36189776 + MER58B DNA MER1_type 48 146 -2274 1880 112 14 11 chr1 206474577 206474863 -36189490 - AluSx SINE Alu -25 287 1 1250 176 13 88 chr1 206474863 206475076 -36189277 + MER58B DNA MER1_type 146 331 -10 244 215 89 0 chr1 206475147 206475226 -36189127 + L1MC4a LINE L1 6074 6159 -1649 35 0 0 0 chr1 206475245 206475280 -36189073 + AT_rich Low_complexity Low_complexity 1 35 0 752 161 0 0 chr1 206475280 206475398 -36188955 - FLAM_C SINE Alu -15 118 1 270 260 133 40 chr1 206475761 206475934 -36188419 + MIR3 SINE MIR 4 192 -16 3424 218 53 32 chr1 206476586 206477136 -36187217 + L1MC4a LINE L1 6854 7435 -373 1665 161 0 11 chr1 206477136 206477475 -36186878 + AluJo SINE Alu 1 336 0 3424 218 53 32 chr1 206477475 206477857 -36186496 + L1MC4a LINE L1 7435 7807 -1 218 241 111 0 chr1 206477936 206477990 -36186363 + L2 LINE L2 3127 3186 -86 690 301 122 35 chr1 206478046 206478696 -36185657 + L2 LINE L2 2367 3087 -226 2055 161 60 8 chr1 206478712 206479078 -36185275 - MLT1C LTR MaLR 0 467 83 375 87 0 0 chr1 206479080 206479162 -36185191 + Alu SINE Alu 236 317 0 287 212 30 81 chr1 206479266 206479365 -36184988 + L2 LINE L2 3123 3216 -97 271 292 15 0 chr1 206479594 206479659 -36184694 + L2 LINE L2 3247 3312 -1 410 222 170 62 chr1 206479747 206479941 -36184412 + MIR SINE MIR 31 245 -17 218 333 20 10 chr1 206480600 206480699 -36183654 + MIR SINE MIR 33 132 -76 2393 239 150 31 chr1 206480839 206481080 -36183273 - L2 LINE L2 0 3313 3102 2009 144 0 3 chr1 206481080 206481393 -36182960 - AluSx SINE Alu 0 312 1 2393 239 150 31 chr1 206481393 206482281 -36182072 - L2 LINE L2 -211 3102 2052 1921 202 18 18 chr1 206483003 206483399 -36180954 + MSTD LTR MaLR 1 396 0 355 279 148 8 chr1 206483596 206483718 -36180635 - MIR SINE MIR -108 154 16 214 191 0 0 chr1 206483755 206483797 -36180556 - MIR SINE MIR -63 145 104 207 0 0 0 chr1 206484671 206484694 -36179659 + (CATA)n Simple_repeat Simple_repeat 2 24 0 441 0 0 0 chr1 206484700 206484749 -36179604 + (TG)n Simple_repeat Simple_repeat 2 50 0 288 251 166 43 chr1 206484960 206485147 -36179206 + MLT1J1 LTR MaLR 101 310 -136 1986 113 32 0 chr1 206485207 206485490 -36178863 + AluSq SINE Alu 1 292 -21 778 266 94 34 chr1 206485944 206486219 -36178134 + MLT1H LTR MaLR 21 278 -271 1057 177 101 10 chr1 206486219 206486417 -36177936 + MER20 DNA MER1_type 1 216 -3 778 266 94 34 chr1 206486417 206486599 -36177754 + MLT1H LTR MaLR 278 549 0 533 230 108 14 chr1 206486756 206486895 -36177458 - MIR SINE MIR -27 235 84 228 250 172 0 chr1 206486956 206487020 -36177333 - MIR SINE MIR -165 97 23 399 257 55 28 chr1 206487220 206487329 -36177024 + MIR SINE MIR 34 145 -117 274 258 10 41 chr1 206487361 206487458 -36176895 - L2 LINE L2 -51 3262 3169 2160 109 8 42 chr1 206487672 206487796 -36176557 - L1PB1 LINE L1 -5 6146 6019 2002 118 20 0 chr1 206487796 206488092 -36176261 - AluSx SINE Alu -10 302 1 2160 109 8 42 chr1 206488092 206488325 -36176028 - L1PB1 LINE L1 -132 6019 5801 614 247 121 0 chr1 206488508 206488682 -36175671 + MIR SINE MIR 2 196 -66 372 251 60 36 chr1 206488949 206489116 -36175237 - L1ME4a LINE L1 -16 6105 5935 469 295 76 55 chr1 206489684 206489921 -36174432 - MIR SINE MIR -1 261 20 320 261 45 68 chr1 206489943 206490119 -36174234 - HAL1 LINE L1 -2 2505 2334 2296 93 7 0 chr1 206490119 206490429 -36173924 - AluSx SINE Alu 0 312 1 896 198 24 107 chr1 206490796 206491134 -36173219 - HAL1 LINE L1 -845 1662 1353 407 256 248 74 chr1 206491135 206491306 -36173047 - HAL1 LINE L1 -1398 1109 969 2478 60 0 6 chr1 206491306 206491620 -36172733 - AluSq SINE Alu -1 312 1 407 256 248 74 chr1 206491620 206492191 -36172162 - HAL1 LINE L1 -1538 969 238 288 0 0 0 chr1 206492363 206492395 -36171958 + (T)n Simple_repeat Simple_repeat 1 32 0 428 260 139 40 chr1 206492429 206492867 -36171486 - MLT1H1 LTR MaLR -7 548 14 503 253 155 29 chr1 206493111 206493219 -36171134 + MIR SINE MIR 34 127 -135 1796 154 3 3 chr1 206493219 206493512 -36170841 + AluJb SINE Alu 1 293 -19 503 253 155 29 chr1 206493512 206493577 -36170776 + MIR SINE MIR 127 229 -33 346 312 0 0 chr1 206493708 206493801 -36170552 + MIR SINE MIR 160 252 -10 193 29 29 29 chr1 206494134 206494169 -36170184 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 246 260 55 14 chr1 206495310 206495383 -36168970 - MIR SINE MIR -82 180 105 351 314 137 7 chr1 206495465 206495618 -36168735 + MIR SINE MIR 13 185 -77 318 300 71 0 chr1 206495798 206495938 -36168415 - MIR SINE MIR -65 197 48 282 29 0 0 chr1 206497128 206497163 -36167190 + (CCCCG)n Simple_repeat Simple_repeat 2 36 0 317 259 38 30 chr1 206497574 206497705 -36166648 + L3b LINE CR1 1103 1234 -349 1579 150 30 0 chr1 206497825 206498153 -36166200 - AluJo SINE Alu 0 372 37 532 323 96 46 chr1 206498169 206498606 -36165747 - L2 LINE L2 -4 3268 2810 989 124 5 87 chr1 206498769 206498954 -36165399 + MER20 DNA MER1_type 1 170 -49 589 204 32 96 chr1 206499378 206499448 -36164905 + L2 LINE L2 3101 3174 -139 2139 117 0 10 chr1 206499448 206499757 -36164596 - AluSq SINE Alu -7 306 1 589 204 32 96 chr1 206499757 206499906 -36164447 + L2 LINE L2 3174 3306 -7 1740 178 10 0 chr1 206499906 206500215 -36164138 + AluJo SINE Alu 1 312 0 1685 184 10 0 chr1 206501128 206501427 -36162926 + AluJo SINE Alu 5 306 -6 22 70 0 0 chr1 206501749 206501792 -36162561 + AT_rich Low_complexity Low_complexity 1 43 0 430 309 33 0 chr1 206501843 206501995 -36162358 - MIR SINE MIR -73 189 33 338 0 0 0 chr1 206502026 206502071 -36162282 + AluY SINE Alu 256 300 0 431 328 43 14 chr1 206502614 206502778 -36161575 - MIR SINE MIR -53 209 42 1799 156 20 0 chr1 206502852 206503147 -36161206 + AluJb SINE Alu 1 301 -11 2215 83 7 3 chr1 206503486 206503776 -36160577 + AluSc SINE Alu 1 291 -18 202 347 57 16 chr1 206504039 206504163 -36160190 + L2 LINE L2 2849 2977 -337 225 0 0 0 chr1 206504429 206504454 -36159899 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 299 314 105 67 chr1 206504819 206505294 -36159059 - L2 LINE L2 -457 2857 2365 264 186 0 0 chr1 206506063 206506122 -36158231 + (TA)n Simple_repeat Simple_repeat 2 60 0 943 164 153 0 chr1 206506122 206506311 -36158042 - AluSc SINE Alu -91 218 1 261 163 0 20 chr1 206506612 206506661 -36157692 + MIR SINE MIR 103 150 -112 269 177 258 0 chr1 206506905 206506967 -36157386 - MER81 DNA DNA 0 114 37 560 243 76 80 chr1 206506995 206507271 -36157082 - MLT1J LTR MaLR -140 371 97 235 315 45 45 chr1 206507379 206507490 -36156863 - L2 LINE L2 -22 3250 3140 211 163 23 0 chr1 206509086 206509129 -36155224 - MIR SINE MIR 0 262 219 526 229 25 8 chr1 206509348 206509470 -36154883 - MIR SINE MIR -54 208 85 419 293 79 6 chr1 206509550 206509714 -36154639 - MIR SINE MIR -59 203 28 360 0 0 0 chr1 206510049 206510089 -36154264 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr1 206511732 206511758 -36152595 + AT_rich Low_complexity Low_complexity 1 26 0 182 233 96 27 chr1 206511942 206512015 -36152338 - MIR SINE MIR -66 196 119 195 287 148 17 chr1 206512211 206512326 -36152027 - MIR SINE MIR -33 229 100 1691 146 114 0 chr1 206513217 206513525 -36150828 - MER2 DNA MER2_type -1 343 1 2576 99 10 48 chr1 206515396 206515788 -36148565 + MER51B LTR ERV1 1 377 0 193 337 113 54 chr1 206516234 206516738 -36147615 + L2 LINE L2 1750 2283 -1031 2065 133 0 3 chr1 206516738 206517038 -36147315 - AluSx SINE Alu -13 299 1 1087 165 14 46 chr1 206517042 206517260 -36147093 - AluJb SINE Alu -15 297 87 256 290 68 72 chr1 206517260 206517481 -36146872 + L2 LINE L2 2280 2499 -815 188 237 0 0 chr1 206517500 206517538 -36146815 - L2 LINE L2 -10 3262 3225 485 99 12 0 chr1 206517568 206517649 -36146704 + (GA)n Simple_repeat Simple_repeat 2 83 0 195 246 82 82 chr1 206517649 206517759 -36146594 - L2 LINE L2 -86 3227 3118 313 229 16 0 chr1 206517807 206517868 -36146485 - L2 LINE L2 0 3313 3252 2023 93 10 55 chr1 206518063 206518374 -36145979 + AluSc SINE Alu 1 297 -12 187 290 145 52 chr1 206518394 206518587 -36145766 + L2 LINE L2 2813 3023 -249 1757 155 0 10 chr1 206518860 206519157 -36145196 - AluSx SINE Alu -16 296 3 2200 117 0 0 chr1 206519425 206519724 -36144629 - AluSx SINE Alu -11 301 3 274 288 96 13 chr1 206519850 206520079 -36144274 - L1M4 LINE L1 -1899 4247 4000 990 246 54 136 chr1 206520416 206520499 -36143854 - L2 LINE L2 0 3313 3225 1692 94 0 0 chr1 206520499 206520723 -36143630 + AluY SINE Alu 1 224 -87 990 246 54 136 chr1 206520723 206520766 -36143587 - L2 LINE L2 -88 3225 3180 2206 108 0 19 chr1 206520766 206521080 -36143273 + AluSg SINE Alu 2 309 -1 990 246 54 136 chr1 206521080 206521186 -36143167 - L2 LINE L2 -133 3180 3067 2078 87 42 0 chr1 206521186 206521472 -36142881 + AluSq SINE Alu 1 298 -15 990 246 54 136 chr1 206521472 206521789 -36142564 - L2 LINE L2 -246 3067 2807 2293 96 3 10 chr1 206523457 206523769 -36140584 - AluSx SINE Alu -2 310 1 1559 171 34 0 chr1 206524430 206524693 -36139660 + AluJo SINE Alu 40 311 -1 414 250 104 71 chr1 206524749 206524961 -36139392 - MIR SINE MIR -2 260 42 187 370 12 0 chr1 206525393 206525474 -36138879 + L3b LINE CR1 1356 1437 -146 456 263 23 88 chr1 206525796 206525967 -36138386 + MIR3 SINE MIR 6 165 -43 1172 154 28 6 chr1 206526265 206526447 -36137906 + Tigger3(Golem) DNA MER2_type 2843 3028 -1 1918 128 0 0 chr1 206527066 206527331 -36137022 + AluSx SINE Alu 1 265 -47 198 286 36 0 chr1 206527521 206527577 -36136776 - MIR3 SINE MIR -1 207 150 416 221 164 21 chr1 206528442 206528582 -36135771 - MIR3 SINE MIR -23 185 26 369 0 0 0 chr1 206528879 206528920 -36135433 + (CA)n Simple_repeat Simple_repeat 1 41 0 279 286 161 0 chr1 206529059 206529171 -36135182 - L2 LINE L2 -4 3268 3139 394 111 0 0 chr1 206530369 206530423 -36133930 + MADE1 DNA Mariner 1 54 -26 2401 84 3 3 chr1 206530443 206530754 -36133599 - AluSp SINE Alu -2 311 1 2025 141 0 0 chr1 206531286 206531583 -36132770 + AluSx SINE Alu 1 297 -15 527 152 0 10 chr1 206531591 206531690 -36132663 + GA-rich Low_complexity Low_complexity 3 100 0 186 133 0 0 chr1 206531731 206531761 -36132592 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 800 221 33 0 chr1 206532425 206532606 -36131747 - HAL1 LINE L1 -731 1776 1590 1622 168 16 16 chr1 206532901 206533071 -36131282 - AluJo SINE Alu -6 306 134 1976 152 0 0 chr1 206533071 206533361 -36130992 - AluSx SINE Alu -20 292 3 1622 168 16 16 chr1 206533361 206533493 -36130860 - AluJo SINE Alu -177 135 4 400 61 0 0 chr1 206534164 206534213 -36130140 - U6 snRNA snRNA -58 49 1 655 35 0 59 chr1 206534253 206534338 -36130015 + MADE1 DNA Mariner 1 80 0 816 258 115 0 chr1 206534473 206534725 -36129628 - LTR33 LTR ERVL -38 483 203 291 215 20 101 chr1 206534725 206534874 -36129479 + MER57-int LTR ERV1 4304 4440 -2318 1278 133 6 0 chr1 206534877 206535058 -36129295 + AluSq SINE Alu 10 191 -122 952 108 0 0 chr1 206535059 206535179 -36129174 + AluSp/q SINE Alu 156 275 -38 207 0 0 0 chr1 206535186 206535209 -36129144 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 273 247 211 32 chr1 206535297 206535487 -36128866 - LTR48B LTR ERV1 -293 351 128 * 410 136 6 140 chr1 206535477 206535586 -36128767 - MER34 LTR ERV1 -439 146 1 2049 225 92 11 chr1 206535588 206536140 -36128213 + LTR48B LTR ERV1 1 597 -47 1354 175 93 57 chr1 206536141 206536495 -36127858 + MER57-int LTR ERV1 2871 3237 -1699 2219 88 35 0 chr1 206536833 206537117 -36127236 - AluSg1 SINE Alu -13 296 3 641 289 50 64 chr1 206537588 206537917 -36126436 + MER57-int LTR ERV1 6794 7081 -456 30 0 0 0 chr1 206537941 206537971 -36126382 + AT_rich Low_complexity Low_complexity 1 30 0 887 176 51 2 chr1 206537973 206538148 -36126205 + L1ME1 LINE L1 5993 6332 -2 207 0 0 0 chr1 206538174 206538197 -36126156 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1299 197 32 100 chr1 206538876 206539276 -36125077 + MLT2D LTR ERVL 1 373 -41 1254 146 24 5 chr1 206539276 206539489 -36124864 - Tigger1 DNA MER2_type 0 2418 2202 569 126 252 16 chr1 206539478 206539605 -36124748 - Tigger1 DNA MER2_type -2261 157 1 * 306 102 82 0 chr1 206539605 206539646 -36124707 + MLT2D LTR ERVL 471 515 0 21 57 0 0 chr1 206540930 206540965 -36123388 + GC_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 206541114 206541138 -36123215 + GC_rich Low_complexity Low_complexity 1 24 0 479 270 147 24 chr1 206541857 206542068 -36122285 - MIR SINE MIR -6 256 20 236 253 187 0 chr1 206543089 206543180 -36121173 - MIR SINE MIR -82 126 19 198 311 54 14 chr1 206543684 206543758 -36120595 + MIR SINE MIR 41 117 -91 878 129 0 0 chr1 206544342 206544458 -36119895 + FLAM_C SINE Alu 1 116 -27 2242 106 3 0 chr1 206544471 206544764 -36119589 - AluSp SINE Alu -19 294 1 1873 165 10 69 chr1 206544925 206545318 -36119035 - MLT1A2 LTR MaLR 0 374 5 503 220 40 100 chr1 206545411 206545483 -36118870 + Tigger3(Golem) DNA MER2_type 1 61 -1170 2124 135 0 3 chr1 206545483 206545795 -36118558 + AluSx SINE Alu 1 311 -1 503 220 40 100 chr1 206545795 206545872 -36118481 + Tigger3(Golem) DNA MER2_type 61 141 -1090 2321 102 0 0 chr1 206545874 206546169 -36118184 - AluSg SINE Alu -15 295 1 1954 108 0 0 chr1 206546176 206546434 -36117919 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 2531 149 12 5 chr1 206546434 206546843 -36117510 + L1MC1 LINE L1 5922 6333 0 351 296 84 0 chr1 206546923 206547065 -36117288 + MIR SINE MIR 79 232 -30 416 268 21 49 chr1 206548225 206548367 -36115986 + MIR3 SINE MIR 4 141 -67 346 264 55 11 chr1 206548464 206548555 -36115798 + MIR SINE MIR 53 147 -61 213 175 0 0 chr1 206549265 206549305 -36115048 + T-rich Low_complexity Low_complexity 1 40 0 3800 87 13 6 chr1 206549477 206550020 -36114333 - L1P LINE L1 -803 5343 4797 1274 128 16 0 chr1 206550546 206550734 -36113619 - AluSg/x SINE Alu -2 308 118 306 102 82 0 chr1 206552216 206552257 -36112096 - MLT2B2 LTR ERVL 0 515 471 569 126 252 16 chr1 206552257 206552384 -36111969 + Tigger1 DNA MER2_type 1 157 -2261 * 954 188 34 5 chr1 206552373 206552581 -36111772 + Tigger1 DNA MER2_type 2202 2415 -3 387 190 10 20 chr1 206552783 206552883 -36111470 + L1MA7 LINE L1 6188 6286 -5 396 281 123 54 chr1 206552889 206553129 -36111224 + L1M1 LINE L1 2744 2999 -927 2453 73 0 19 chr1 206553129 206553444 -36110909 + AluSc SINE Alu 1 309 0 396 281 123 54 chr1 206553444 206553463 -36110890 + L1M1 LINE L1 2999 3015 -911 453 309 103 45 chr1 206554088 206555523 -36108830 - L1M4 LINE L1 -1871 4275 2757 1628 281 117 71 chr1 206555535 206556189 -36108164 - L1M4 LINE L1 -903 5243 4620 280 81 0 0 chr1 206556189 206556226 -36108127 - tRNA-Gly-GGG tRNA tRNA -37 37 1 1628 281 117 71 chr1 206556226 206557362 -36106991 - L1M4 LINE L1 -1526 4620 3334 4743 112 20 38 chr1 206557496 206558285 -36106068 - L1MA8 LINE L1 -77 6214 5440 291 203 65 81 chr1 206558307 206558430 -36105923 - L1MEd LINE L1 -4875 1244 1124 239 211 19 0 chr1 206558514 206558566 -36105787 - L1MA8 LINE L1 -2 6289 6237 * 297 287 138 0 chr1 206558565 206558746 -36105607 - L1MEd LINE L1 -5014 1105 900 2363 91 0 0 chr1 206559156 206559443 -36104910 - AluSx SINE Alu -8 304 18 290 319 35 26 chr1 206559514 206559627 -36104726 + L2 LINE L2 3141 3254 -18 299 278 130 43 chr1 206559751 206559866 -36104487 + MIR SINE MIR 21 145 -63 486 201 113 88 chr1 206559871 206560009 -36104344 + MLT1I LTR MaLR 211 357 -52 2158 98 0 48 chr1 206560009 206560324 -36104029 + AluSc SINE Alu 1 300 -9 486 201 113 88 chr1 206560324 206560379 -36103974 + MLT1I LTR MaLR 357 409 0 1677 151 72 11 chr1 206560474 206560752 -36103601 - AluSx SINE Alu -17 295 1 2207 124 0 0 chr1 206560908 206561215 -36103138 - AluSx SINE Alu -5 307 1 21 0 0 0 chr1 206562485 206562506 -36101847 + AT_rich Low_complexity Low_complexity 1 21 0 191 229 21 0 chr1 206562777 206562825 -36101528 + MIR SINE MIR 116 164 -98 419 224 61 0 chr1 206562859 206562957 -36101396 + L2 LINE L2 3169 3272 0 269 188 159 29 chr1 206563172 206563241 -36101112 + Charlie1 DNA MER1_type 1570 1647 -1114 31 44 0 0 chr1 206563795 206563840 -36100513 + AT_rich Low_complexity Low_complexity 1 45 0 327 258 17 25 chr1 206563963 206564083 -36100270 + CT-rich Low_complexity Low_complexity 2 120 0 348 290 20 45 chr1 206564517 206564717 -36099636 - L1ME4a LINE L1 -286 5835 5641 303 238 119 0 chr1 206565205 206565289 -36099064 - L1ME2 LINE L1 -27 6137 6044 401 190 90 0 chr1 206565310 206565410 -36098943 + L1MB8 LINE L1 6070 6178 0 * 2895 207 38 27 chr1 206565403 206566114 -36098239 - L1ME2 LINE L1 -107 6057 5339 2000 104 14 24 chr1 206566239 206566551 -36097802 - AluSx SINE Alu 0 309 1 1260 50 19 0 chr1 206566556 206566716 -36097637 - AluY SINE Alu -15 296 134 450 0 0 0 chr1 206566821 206566871 -36097482 + (TG)n Simple_repeat Simple_repeat 2 51 0 2210 125 0 0 chr1 206567275 206567572 -36096781 + AluSx SINE Alu 1 297 -15 317 216 134 10 chr1 206568562 206568659 -36095694 + L1ME4a LINE L1 6013 6121 0 532 199 141 84 chr1 206569018 206569209 -36095144 + MER20 DNA MER1_type 18 219 0 345 288 31 49 chr1 206569320 206569483 -36094870 - MER5A DNA MER1_type -27 162 3 208 300 223 23 chr1 206570269 206570399 -36093954 + L2 LINE L2 2994 3149 -123 1186 175 38 0 chr1 206571097 206571308 -36093045 + AluJo SINE Alu 2 220 -92 545 105 21 63 chr1 206571326 206571421 -36092932 - MER81 DNA DNA -4 110 20 2300 79 3 3 chr1 206571912 206572204 -36092149 + AluSq SINE Alu 1 292 -21 2256 112 0 0 chr1 206572425 206572720 -36091633 - AluSx SINE Alu -17 295 1 199 103 0 0 chr1 206573139 206573168 -36091185 + (TTTTA)n Simple_repeat Simple_repeat 2 140 0 2175 96 3 7 chr1 206573168 206573450 -36090903 - AluSg1 SINE Alu -1 309 1 184 349 0 0 chr1 206573524 206573590 -36090763 + L2 LINE L2 2715 2780 -534 1455 176 4 4 chr1 206573926 206574171 -36090182 + PRIMA41-int LTR ERV1 2656 2900 -4856 567 121 0 0 chr1 206574171 206574254 -36090099 - AluSc SINE Alu -3 306 224 8081 216 18 26 chr1 206574262 206575141 -36089212 + PRIMA41-int LTR ERV1 2925 3809 -3947 1712 144 26 49 chr1 206575141 206575447 -36088906 - AluJo SINE Alu -8 304 6 8081 216 18 26 chr1 206575447 206576373 -36087980 + PRIMA41-int LTR ERV1 3804 4717 -3034 1976 130 25 0 chr1 206576373 206576649 -36087704 + AluSq SINE Alu 1 283 -30 345 271 206 5 chr1 206576764 206576963 -36087390 + MIR SINE MIR 3 241 -21 * 1810 231 103 6 chr1 206576958 206577472 -36086881 + L2 LINE L2 2065 2628 -686 794 223 118 70 chr1 206577514 206578030 -36086323 + MER41D LTR ERV1 1 557 0 588 200 13 109 chr1 206578051 206578301 -36086052 + MER41D-int LTR ERV1 21 1028 -5819 2163 107 4 0 chr1 206578591 206578900 -36085453 - AluSx SINE Alu 0 310 1 6996 219 65 60 chr1 206578987 206579263 -36085090 + PRIMA41-int LTR ERV1 663 936 -6820 831 137 0 58 chr1 206579263 206579402 -36084951 + FLAM_C SINE Alu 1 131 -2 6996 219 65 60 chr1 206579402 206581045 -36083308 + PRIMA41-int LTR ERV1 936 2591 -5165 755 206 80 0 chr1 206581200 206581375 -36082978 + MER53 DNA DNA 1 189 0 316 206 93 10 chr1 206581999 206582096 -36082257 - MIR SINE MIR -63 145 41 206 318 82 24 chr1 206582258 206582343 -36082010 + MIR SINE MIR 4 93 -169 879 154 14 0 chr1 206582351 206582494 -36081859 - FAM SINE Alu -5 44 1 990 256 52 7 chr1 206582506 206582795 -36081558 - LTR33 LTR ERVL -2 519 218 280 203 127 0 chr1 206582945 206583024 -36081329 + MIR SINE MIR 113 201 -61 314 284 74 0 chr1 206583033 206583128 -36081225 - L2 LINE L2 -7 3306 3205 1686 225 117 19 chr1 206583402 206583874 -36080479 - MLT2B1 LTR ERVL 0 520 3 344 323 51 21 chr1 206584409 206584644 -36079709 + L2 LINE L2 2826 3067 -246 303 282 0 0 chr1 206585586 206585657 -36078696 + L2 LINE L2 3243 3313 0 633 222 39 101 chr1 206587686 206587992 -36076361 - HAL1 LINE L1 -1 2506 2220 27 0 0 0 chr1 206588108 206588135 -36076218 + AT_rich Low_complexity Low_complexity 1 27 0 280 284 81 20 chr1 206588401 206588549 -36075804 + HAL1b LINE L1 750 906 -442 1037 141 0 6 chr1 206588683 206588846 -36075507 + AluSq SINE Alu 152 313 0 235 284 0 0 chr1 206590829 206590896 -36073457 - L1MC5 LINE L1 -87 7874 7808 545 154 0 29 chr1 206590944 206591048 -36073305 - AluSg/x SINE Alu 0 312 212 1285 171 83 102 chr1 206591053 206591110 -36073243 - L1MC5 LINE L1 -180 7781 7724 1730 145 55 12 chr1 206591110 206591435 -36072918 - L1MB3 LINE L1 0 6183 5845 1285 171 83 102 chr1 206591435 206591639 -36072714 - L1MC5 LINE L1 -237 7724 7518 2842 10 3 10 chr1 206591639 206591951 -36072402 - AluY SINE Alu -1 310 1 1285 171 83 102 chr1 206591951 206592168 -36072185 - L1MC5 LINE L1 -443 7518 7311 4799 42 7 2 chr1 206592329 206592907 -36071446 + L1PA4 LINE L1 5574 6154 -1 1823 149 7 36 chr1 206592915 206593224 -36071129 + AluJo SINE Alu 5 304 -8 280 317 37 12 chr1 206593492 206593656 -36070697 - L3b LINE CR1 -139 1444 1277 201 158 0 0 chr1 206593855 206593893 -36070460 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 608 265 72 6 chr1 206595133 206595299 -36069054 + MER45A DNA AcHobo 1 177 -1 2988 215 162 25 chr1 206646107 206647192 -36017161 + L1M2 LINE L1 1 1438 -5771 1531 159 7 18 chr1 206648495 206648772 -36015581 - AluJo SINE Alu -38 274 1 639 176 0 9 chr1 206649791 206649899 -36014454 - MIR SINE MIR -89 173 67 514 179 207 0 chr1 206649911 206650051 -36014302 - ORSL DNA AcHobo -21 254 86 1539 154 45 0 chr1 206651688 206651955 -36012398 - MER2 DNA MER2_type -25 320 42 837 255 148 39 chr1 206652318 206652827 -36011526 + MLT1L LTR MaLR 1 611 -3 182 296 0 0 chr1 206655101 206655145 -36009208 - L2 LINE L2 -967 2347 2304 884 180 146 0 chr1 206655177 206655383 -36008970 - MIR SINE MIR -17 245 10 249 108 0 0 chr1 206656458 206656495 -36007858 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 6267 78 4 60 chr1 206656922 206657998 -36006355 + SVA Other Other 432 1385 -1 22 35 0 0 chr1 206658053 206658082 -36006271 + AT_rich Low_complexity Low_complexity 1 29 0 232 270 135 54 chr1 206658090 206658497 -36005856 + L1M4 LINE L1 4513 4952 -1194 519 317 37 0 chr1 206660281 206660442 -36003911 + MIR SINE MIR 94 260 -2 229 314 25 59 chr1 206661528 206661646 -36002707 + L2 LINE L2 3139 3252 -20 2069 101 44 0 chr1 206662188 206662486 -36001867 + AluSx SINE Alu 1 311 -1 199 304 128 10 chr1 206663162 206663264 -36001089 - L2 LINE L2 0 3313 3200 1011 134 25 0 chr1 206663495 206663652 -36000701 + AluJo SINE Alu 1 161 -151 308 273 134 34 chr1 206663738 206663976 -36000377 - HAL1 LINE L1 -1 2506 2245 1218 265 122 40 chr1 206664264 206664539 -35999814 - HAL1 LINE L1 -335 2172 1921 2020 79 69 0 chr1 206664539 206664816 -35999537 - AluSp SINE Alu -17 296 1 1218 265 122 40 chr1 206664816 206665189 -35999164 - HAL1 LINE L1 -586 1921 1471 767 164 67 89 chr1 206665238 206665379 -35998974 - L1MB8 LINE L1 -1 6177 6041 1774 153 24 0 chr1 206665379 206665674 -35998679 + AluJo SINE Alu 1 302 -10 767 164 67 89 chr1 206665674 206665757 -35998596 - L1MB8 LINE L1 -137 6041 5958 1456 173 67 78 chr1 206665857 206666203 -35998150 + MLT1A1 LTR MaLR 24 365 0 320 254 33 57 chr1 206666289 206666411 -35997942 - MIR SINE MIR -122 140 22 232 247 74 62 chr1 206667055 206667136 -35997217 + MIR SINE MIR 111 192 -70 44030 44 3 5 chr1 206667360 206673520 -35990833 + L1PA4 LINE L1 7 6149 -6 650 263 17 29 chr1 206673549 206673724 -35990629 + MER5A DNA MER1_type 2 174 -15 482 239 70 24 chr1 206673726 206673927 -35990426 - MIR SINE MIR -41 221 5 217 245 293 0 chr1 206674261 206674367 -35989986 - MIR SINE MIR -17 245 109 200 310 0 0 chr1 206674837 206674895 -35989458 + C-rich Low_complexity Low_complexity 1 58 0 665 301 58 13 chr1 206675300 206675526 -35988827 + MIR SINE MIR 24 259 -3 894 196 57 0 chr1 206676432 206676613 -35987740 - MIR SINE MIR -58 204 11 497 230 44 9 chr1 206676961 206677074 -35987279 - MIR SINE MIR -35 227 111 501 258 179 0 chr1 206678503 206678654 -35985699 + MER5A DNA MER1_type 10 187 -2 511 272 84 14 chr1 206679134 206679306 -35985047 + L1MC4a LINE L1 5713 5904 -1904 1196 199 116 16 chr1 206679306 206679617 -35984736 + MER2 DNA MER2_type 3 344 0 511 272 84 14 chr1 206679617 206679657 -35984696 + L1MC4a LINE L1 5904 5940 -1868 1651 127 3 81 chr1 206679747 206680055 -35984298 - AluJb SINE Alu -18 294 11 939 227 61 18 chr1 206680396 206680674 -35983679 - L1ME2 LINE L1 -9 6155 5866 1320 262 84 31 chr1 206680677 206681131 -35983222 + MLT1J LTR MaLR 29 506 -5 2137 89 0 0 chr1 206681259 206681539 -35982814 + AluSx SINE Alu 1 280 -32 339 85 0 0 chr1 206681543 206681590 -35982763 + (GGGGA)n Simple_repeat Simple_repeat 4 50 0 469 188 180 0 chr1 206681591 206681719 -35982634 + L1M4 LINE L1 3697 3847 -2299 997 152 13 0 chr1 206681720 206681878 -35982475 + FAM SINE Alu 1 43 -6 2592 200 51 59 chr1 206681899 206682502 -35981851 + L1M4 LINE L1 3866 4461 -1685 1541 149 76 28 chr1 206682502 206682790 -35981563 + AluJo SINE Alu 1 302 -10 2592 200 51 59 chr1 206682790 206683051 -35981302 + L1M4 LINE L1 4461 4723 -1423 788 277 99 23 chr1 206683766 206684109 -35980244 - LTR33 LTR ERVL -51 470 102 211 323 108 31 chr1 206684232 206684362 -35979991 + MIR3 SINE MIR 18 157 -51 1916 96 50 4 chr1 206685633 206685954 -35978399 + AluSx SINE Alu 1 312 0 1312 211 63 32 chr1 206686303 206686715 -35977638 - LTR37A LTR ERV1 0 426 2 435 271 103 58 chr1 206687357 206687518 -35976835 - L1ME2 LINE L1 -297 5824 5672 2002 100 0 0 chr1 206687518 206687789 -35976564 - AluSg SINE Alu -13 297 27 1843 135 28 3 chr1 206687789 206688075 -35976278 - AluSx SINE Alu -15 297 3 435 271 103 58 chr1 206688075 206688203 -35976150 - L1ME2 LINE L1 -448 5673 5521 190 153 34 34 chr1 206688845 206688904 -35975449 + CT-rich Low_complexity Low_complexity 3 61 0 188 343 109 0 chr1 206688909 206689046 -35975307 + L2 LINE L2 2258 2409 -905 2258 223 154 58 chr1 206689144 206690257 -35974096 - MER69B DNA AcHobo -2 1224 4 212 132 53 0 chr1 206690288 206690326 -35974027 + CT-rich Low_complexity Low_complexity 2 41 0 196 340 19 78 chr1 206690488 206690744 -35973609 + L2 LINE L2 2830 3070 -202 24 67 0 0 chr1 206690778 206690823 -35973530 + AT_rich Low_complexity Low_complexity 1 45 0 2068 117 0 3 chr1 206690930 206691229 -35973124 - AluSx SINE Alu -14 298 1 320 236 56 0 chr1 206691420 206691509 -35972844 - MIR SINE MIR -125 137 44 1986 111 0 0 chr1 206691713 206691992 -35972361 - AluSx SINE Alu -25 287 9 1281 145 161 0 chr1 206692524 206692773 -35971580 + AluJo SINE Alu 10 298 -14 6898 198 123 31 chr1 206693097 206693637 -35970716 - L1MD1 LINE L1 -5 6237 5748 1599 178 0 10 chr1 206693637 206693929 -35970424 + AluJo SINE Alu 3 291 -21 6898 198 123 31 chr1 206693929 206694345 -35970008 - L1MD1 LINE L1 -494 5748 5372 1455 194 46 0 chr1 206694345 206694505 -35969848 - AluJb SINE Alu -15 297 117 216 0 0 0 chr1 206694505 206694529 -35969824 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1455 194 46 0 chr1 206694529 206694652 -35969701 - AluJb SINE Alu -195 117 1 6898 198 123 31 chr1 206694652 206694976 -35969377 - L1MD1 LINE L1 -870 5372 5079 1963 133 3 7 chr1 206694976 206695278 -35969075 - AluSx SINE Alu -11 301 1 6898 198 123 31 chr1 206695278 206696435 -35967918 - L1MD1 LINE L1 -1163 5079 4031 2227 84 3 32 chr1 206696435 206696746 -35967607 - AluSp SINE Alu -10 303 2 6898 198 123 31 chr1 206696746 206697645 -35966708 - L1MD1 LINE L1 -2211 4031 2561 381 222 96 38 chr1 206697642 206697798 -35966555 - L1ME2 LINE L1 -668 5483 5325 * 539 52 26 13 chr1 206697814 206697891 -35966462 - MADE1 DNA Mariner -2 78 1 203 182 0 55 chr1 206697907 206697962 -35966391 + T-rich Low_complexity Low_complexity 2 53 0 2174 92 0 10 chr1 206698528 206698821 -35965532 - AluSx SINE Alu -22 290 1 4813 141 5 9 chr1 206699085 206699849 -35964504 - L1PA16 LINE L1 -17 6149 5389 2231 72 7 3 chr1 206699879 206700171 -35964182 + AluSp SINE Alu 1 293 -20 236 30 30 0 chr1 206700344 206700377 -35963976 + (TTA)n Simple_repeat Simple_repeat 2 35 0 30 0 0 0 chr1 206700658 206700688 -35963665 + AT_rich Low_complexity Low_complexity 1 30 0 494 336 80 18 chr1 206700869 206701143 -35963210 - L3b LINE CR1 -170 1413 1123 189 279 44 59 chr1 206701198 206701266 -35963087 + MIR3 SINE MIR 130 196 -12 245 266 133 23 chr1 206702023 206702151 -35962202 + L2 LINE L2 2914 3055 -217 368 194 30 0 chr1 206702490 206702557 -35961796 - L2 LINE L2 -4 3309 3241 1149 150 35 115 chr1 206702679 206702966 -35961387 - AluJb SINE Alu -48 264 1 791 249 95 69 chr1 206702983 206703458 -35960895 + MLT1H LTR MaLR 1 517 -32 770 173 0 15 chr1 206703596 206703760 -35960593 + FLAM_C SINE Alu 1 133 0 2161 42 3 35 chr1 206703816 206704129 -35960224 + SVA Other Other 1 303 -1083 369 0 0 0 chr1 206704394 206704435 -35959918 + (T)n Simple_repeat Simple_repeat 1 41 0 312 232 101 30 chr1 206704435 206704534 -35959819 - L2 LINE L2 -20 3293 3188 213 253 19 25 chr1 206704759 206704917 -35959436 + (TTA)n Simple_repeat Simple_repeat 1 157 0 256 247 35 12 chr1 206706030 206706115 -35958238 + CT-rich Low_complexity Low_complexity 2 88 0 384 284 113 64 chr1 206707020 206707347 -35957006 - L2 LINE L2 -759 2555 2213 363 312 16 8 chr1 206707399 206707524 -35956829 - L2 LINE L2 -1342 1972 1847 722 272 65 9 chr1 206707526 206707758 -35956595 + MLT1J2 LTR MaLR 1 245 -205 418 311 44 0 chr1 206708332 206708467 -35955886 + MIR3 SINE MIR 47 187 -21 712 192 99 7 chr1 206710161 206710312 -35954041 - L1ME1 LINE L1 -5 6161 5997 362 169 155 0 chr1 206710340 206710411 -35953942 + L2 LINE L2 3225 3306 -7 186 343 45 0 chr1 206710490 206710557 -35953796 - L3 LINE CR1 -7 1570 1501 1612 193 3 7 chr1 206710645 206711091 -35953262 + AluJo SINE Alu 5 449 0 796 318 215 28 chr1 206711091 206711783 -35952570 - L3 LINE CR1 -193 1384 563 186 281 219 0 chr1 206711945 206712073 -35952280 + L2 LINE L2 2899 3054 -218 554 168 0 32 chr1 206712714 206712899 -35951454 + (CA)n Simple_repeat Simple_repeat 2 180 0 303 220 18 0 chr1 206712937 206713105 -35951248 + (CA)n Simple_repeat Simple_repeat 1 171 0 875 203 28 18 chr1 206713889 206714106 -35950247 + MER20 DNA MER1_type 1 219 0 371 215 0 0 chr1 206714298 206714363 -35949990 - MIR SINE MIR -62 146 82 686 144 29 0 chr1 206715277 206715381 -35948972 + U6 snRNA snRNA 1 107 0 2081 89 0 0 chr1 206715482 206715751 -35948602 - AluSq SINE Alu -44 269 1 2135 199 34 43 chr1 206716864 206717372 -35946981 + MLT1D LTR MaLR 1 503 -2 1212 223 95 15 chr1 206718094 206718227 -35946126 + AluJb SINE Alu 1 122 -180 2150 83 17 7 chr1 206718227 206718528 -35945825 + AluSg SINE Alu 1 304 -6 1212 223 95 15 chr1 206718528 206718668 -35945685 + AluJb SINE Alu 122 296 -6 525 332 86 36 chr1 206718819 206719434 -35944919 - L2 LINE L2 -799 2515 1870 234 0 0 0 chr1 206719435 206719461 -35944892 + (TG)n Simple_repeat Simple_repeat 2 27 0 183 186 0 0 chr1 206719481 206719524 -35944829 + (TG)n Simple_repeat Simple_repeat 2 44 0 204 233 142 42 chr1 206719685 206719805 -35944548 - L2 LINE L2 -1550 1764 1633 402 278 8 15 chr1 206720282 206720415 -35943938 - MIR SINE MIR -119 143 12 208 359 61 23 chr1 206721234 206721365 -35942988 + MIR SINE MIR 1 136 -126 494 222 24 32 chr1 206721379 206721505 -35942848 - L2 LINE L2 0 3313 3189 513 274 15 24 chr1 206721804 206721979 -35942374 - MIR SINE MIR -57 205 33 32 0 0 0 chr1 206722790 206722822 -35941531 + GC_rich Low_complexity Low_complexity 1 32 0 1219 135 0 45 chr1 206724001 206724223 -35940130 + AluJo SINE Alu 87 298 -14 734 289 80 45 chr1 206724542 206724908 -35939445 + L1ME4a LINE L1 5461 5854 -267 968 177 0 13 chr1 206724908 206725066 -35939287 + FRAM SINE Alu 1 156 -10 734 289 80 45 chr1 206725066 206725249 -35939104 + L1ME4a LINE L1 5854 6029 -92 1046 258 128 10 chr1 206725917 206726552 -35937801 - L2 LINE L2 -32 3281 2566 1272 258 89 10 chr1 206726559 206727172 -35937181 + MER69 DNA AcHobo 3 684 -1842 2852 202 42 29 chr1 206727264 206727795 -35936558 + MER69 DNA AcHobo 1536 2084 -442 2266 95 7 0 chr1 206727795 206728115 -35936238 - AluSp SINE Alu 0 313 1 2852 202 42 29 chr1 206728115 206728440 -35935913 + MER69 DNA AcHobo 2084 2403 -123 2126 110 0 39 chr1 206728479 206728788 -35935565 - AluSx SINE Alu -15 297 1 1906 156 0 0 chr1 206728933 206729222 -35935131 - AluJb SINE Alu 0 312 24 474 261 74 25 chr1 206729324 206729608 -35934745 - HAL1 LINE L1 -1316 1191 894 255 277 198 0 chr1 206729609 206729710 -35934643 - L2 LINE L2 0 3313 3193 978 215 129 33 chr1 206729790 206730092 -35934261 - L1ME3 LINE L1 -28 6134 5804 287 322 132 26 chr1 206730119 206730271 -35934082 + L2 LINE L2 3007 3174 -98 1075 235 21 0 chr1 206730310 206730548 -35933805 - MIR SINE MIR 0 262 20 477 255 20 0 chr1 206730568 206730666 -35933687 - MIR SINE MIR -145 117 18 1487 182 8 94 chr1 206730927 206731329 -35933024 + MLT1A2 LTR MaLR 1 367 -7 1565 171 51 11 chr1 206731427 206731702 -35932651 - AluJb SINE Alu -26 286 1 2152 117 10 0 chr1 206734144 206734435 -35929918 - AluSx SINE Alu -14 298 5 647 218 96 0 chr1 206734478 206734634 -35929719 + MIR SINE MIR 92 262 0 203 296 0 0 chr1 206734708 206734752 -35929601 + MIR SINE MIR 216 259 -3 342 205 90 0 chr1 206735852 206735930 -35928423 - Charlie4a DNA MER1_type -1 507 423 812 209 138 5 chr1 206735938 206736148 -35928205 - L1ME2 LINE L1 -1 6163 5926 21 0 0 0 chr1 206736153 206736174 -35928179 + AT_rich Low_complexity Low_complexity 1 21 0 908 225 70 11 chr1 206736182 206736467 -35927886 - Charlie4a DNA MER1_type -163 345 44 260 312 64 24 chr1 206736685 206736732 -35927621 - L2 LINE L2 -4 3268 3224 2584 97 80 12 chr1 206736732 206737133 -35927220 + MSTA LTR MaLR 1 428 0 260 312 64 24 chr1 206737133 206737210 -35927143 - L2 LINE L2 -48 3224 3139 386 164 230 66 chr1 206737395 206737621 -35926732 - MER20B DNA MER1_type -6 777 515 23 0 0 0 chr1 206738201 206738224 -35926129 + AT_rich Low_complexity Low_complexity 1 23 0 2268 97 7 7 chr1 206738541 206738839 -35925514 - AluSc SINE Alu -11 298 1 3288 182 106 58 chr1 206739003 206740233 -35924120 + L1M4 LINE L1 2 1171 -5473 2100 107 11 0 chr1 206740233 206740541 -35923812 + AluSx SINE Alu 1 311 0 414 100 0 0 chr1 206740541 206740601 -35923752 + (TA)n Simple_repeat Simple_repeat 1 60 0 3288 182 106 58 chr1 206740601 206741063 -35923290 + L1M4 LINE L1 1171 1609 -5035 1779 172 0 11 chr1 206741063 206741371 -35922982 + AluJb SINE Alu 3 307 0 3288 182 106 58 chr1 206741371 206742082 -35922271 + L1M4 LINE L1 1609 2804 -3840 452 125 67 48 chr1 206742099 206742203 -35922150 + L1MB4 LINE L1 6075 6180 0 1898 117 60 0 chr1 206742244 206742526 -35921827 + AluSx SINE Alu 1 299 -13 1647 213 42 81 chr1 206742526 206743070 -35921283 + MLT1F LTR MaLR 20 542 0 2035 141 3 7 chr1 206743142 206743448 -35920905 - AluSx SINE Alu -7 305 1 1787 219 77 9 chr1 206743606 206744136 -35920217 + L1ME3 LINE L1 5484 6049 -113 262 212 0 71 chr1 206744443 206744528 -35919825 + L1ME3 LINE L1 6036 6114 -48 843 93 0 0 chr1 206744722 206744829 -35919524 - AluJo/FRAM SINE Alu -8 304 198 918 161 0 0 chr1 206744830 206744967 -35919386 - FRAM SINE Alu -39 137 1 445 257 24 10 chr1 206745183 206745432 -35918921 - MER20B DNA MER1_type -486 297 5 196 363 44 33 chr1 206745455 206745546 -35918807 + L2 LINE L2 3159 3250 -22 943 194 69 123 chr1 206745711 206746039 -35918314 + HAL1 LINE L1 1698 1992 -515 2054 119 7 3 chr1 206746039 206746333 -35918020 + AluSx SINE Alu 1 295 -17 943 194 69 123 chr1 206746333 206746498 -35917855 + HAL1 LINE L1 1992 2164 -343 211 298 23 69 chr1 206746663 206746794 -35917559 - MIR SINE MIR -59 203 79 23 33 0 0 chr1 206747624 206747654 -35916699 + AT_rich Low_complexity Low_complexity 1 30 0 439 318 252 24 chr1 206748640 206749052 -35915301 + L2 LINE L2 2808 3313 0 456 274 131 17 chr1 206749073 206749310 -35915043 - L2 LINE L2 -36 3277 3014 190 204 61 20 chr1 206749479 206749528 -35914825 - L2 LINE L2 -571 2743 2693 2195 100 28 0 chr1 206749877 206750168 -35914185 + AluSq SINE Alu 1 299 -14 27 29 0 0 chr1 206750813 206750847 -35913506 + AT_rich Low_complexity Low_complexity 1 34 0 219 189 0 19 chr1 206751109 206751162 -35913191 + (TA)n Simple_repeat Simple_repeat 1 52 0 1912 140 36 0 chr1 206751513 206751792 -35912561 - AluJo SINE Alu -23 289 1 1188 280 82 43 chr1 206751870 206751920 -35912433 - L2 LINE L2 -13 3300 3253 2228 124 0 0 chr1 206751920 206752227 -35912126 + AluSx SINE Alu 1 307 -5 1188 280 82 43 chr1 206752227 206752791 -35911562 - L2 LINE L2 -60 3253 2630 2168 182 26 10 chr1 206752791 206753209 -35911144 - MSTB LTR MaLR -1 425 1 1188 280 82 43 chr1 206753209 206753355 -35910998 - L2 LINE L2 -683 2630 2491 919 198 20 12 chr1 206753716 206753964 -35910389 + L1M4 LINE L1 4167 4416 -1730 3325 245 11 10 chr1 206754064 206754848 -35909505 + L1M2 LINE L1 970 1754 -5095 782 177 0 0 chr1 206754852 206754982 -35909371 + AluJb SINE Alu 4 133 -179 1309 180 73 0 chr1 206754988 206755233 -35909120 + AluJo SINE Alu 50 312 0 1031 147 31 0 chr1 206755234 206755458 -35908895 + L1M2 LINE L1 1753 1983 -4866 1194 124 67 53 chr1 206755458 206755598 -35908755 + MER30 DNA MER1_type 3 149 -81 2285 121 0 6 chr1 206755598 206755912 -35908441 + AluSx SINE Alu 1 312 0 1194 124 67 53 chr1 206755912 206755996 -35908357 + MER30 DNA MER1_type 149 230 0 2120 273 88 16 chr1 206756024 206756842 -35907511 + L1P5 LINE L1 3 879 -5984 13640 179 32 20 chr1 206756848 206758153 -35906200 + L1P5 LINE L1 2626 3913 -2954 2181 126 7 0 chr1 206758153 206758454 -35905899 + AluSx SINE Alu 8 310 -2 13640 179 32 20 chr1 206758454 206759122 -35905231 + L1P5 LINE L1 3913 4571 -2296 1948 136 56 0 chr1 206759122 206759408 -35904945 + AluSx SINE Alu 2 303 -9 13640 179 32 20 chr1 206759408 206759437 -35904916 + L1P5 LINE L1 4571 4598 -2269 2465 76 0 0 chr1 206759437 206759739 -35904614 + AluY SINE Alu 1 302 -9 13640 179 32 20 chr1 206759739 206760026 -35904327 + L1P5 LINE L1 4598 4880 -1987 1819 74 0 13 chr1 206760026 206760257 -35904096 + AluY SINE Alu 83 310 -1 13640 179 32 20 chr1 206760257 206761620 -35902733 + L1P5 LINE L1 4880 6324 -543 1890 107 0 0 chr1 206761620 206761872 -35902481 + AluSx SINE Alu 1 252 -60 6695 52 5 41 chr1 206762005 206762928 -35901425 + SVA Other Other 497 1386 0 325 274 0 60 chr1 206763318 206763435 -35900918 - MIR3 SINE MIR -22 186 77 197 306 14 14 chr1 206764547 206764619 -35899734 - MER5B DNA MER1_type -41 137 66 545 212 0 0 chr1 206765430 206765529 -35898824 + AluJ/FLAM SINE Alu 1 99 -213 180 0 0 0 chr1 206765553 206765573 -35898780 + (CAGGG)n Simple_repeat Simple_repeat 5 24 0 491 338 61 64 chr1 206766738 206767084 -35897269 - L2 LINE L2 0 3272 2928 297 250 164 19 chr1 206767377 206767431 -35896922 - MER5A DNA MER1_type 0 189 144 2010 55 8 0 chr1 206767431 206767685 -35896668 - L1PA5 LINE L1 -3 6151 5896 297 250 164 19 chr1 206767685 206767734 -35896619 - MER5A DNA MER1_type -45 144 71 321 211 18 26 chr1 206768093 206768207 -35896146 + CT-rich Low_complexity Low_complexity 5 117 0 774 67 9 0 chr1 206768245 206768350 -35896003 - L1PB3 LINE L1 -8 6146 6041 2039 129 11 0 chr1 206768624 206768910 -35895443 + AluSq SINE Alu 14 302 -11 205 200 44 0 chr1 206768927 206768972 -35895381 - L2 LINE L2 0 3313 3267 1645 158 72 7 chr1 206768984 206769262 -35895091 + AluSg SINE Alu 1 296 -14 275 234 161 23 chr1 206770124 206770217 -35894136 + L1MC5 LINE L1 7688 7767 -194 1604 167 19 7 chr1 206770217 206770487 -35893866 + AluJo SINE Alu 1 273 -39 275 234 161 23 chr1 206770487 206770611 -35893742 + L1MC5 LINE L1 7767 7935 -26 271 272 115 23 chr1 206770698 206770915 -35893438 + L1ME LINE L1 5603 5802 -368 2466 89 0 0 chr1 206771284 206771597 -35892756 - AluSq SINE Alu 0 313 1 2446 33 0 46 chr1 206772107 206772412 -35891941 - AluY SINE Alu -20 291 1 2530 51 0 3 chr1 206772726 206773038 -35891315 + AluY SINE Alu 1 311 0 1081 164 150 18 chr1 206773134 206773420 -35890933 + MER33 DNA MER1_type 1 324 0 1841 123 20 17 chr1 206774437 206774739 -35889614 + AluJb SINE Alu 1 303 -9 787 147 0 0 chr1 206774783 206774899 -35889454 + FLAM_C SINE Alu 1 116 -17 1572 264 100 65 chr1 206775063 206775282 -35889071 - L2 LINE L2 -338 2976 2766 1751 167 0 17 chr1 206775282 206775576 -35888777 - AluSx SINE Alu 0 312 24 1572 264 100 65 chr1 206775576 206776084 -35888269 - L2 LINE L2 -548 2766 2277 2361 87 0 3 chr1 206776084 206776383 -35887970 + AluY SINE Alu 1 298 -13 1572 264 100 65 chr1 206776383 206776394 -35887959 - L2 LINE L2 -1037 2277 2268 2020 127 3 0 chr1 206776394 206776693 -35887660 + AluSq SINE Alu 1 300 -13 1572 264 100 65 chr1 206776693 206776971 -35887382 - L2 LINE L2 -1046 2268 1904 2049 123 0 0 chr1 206777331 206777656 -35886697 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 206777656 206777680 -35886673 + AT_rich Low_complexity Low_complexity 1 24 0 684 205 0 0 chr1 206777680 206777797 -35886556 - FLAM_C SINE Alu -25 118 2 672 255 73 61 chr1 206777798 206778045 -35886308 - MIR SINE MIR -5 257 8 417 289 83 17 chr1 206778291 206778471 -35885882 + MIR SINE MIR 56 247 -15 23 92 0 0 chr1 206778534 206778599 -35885754 + AT_rich Low_complexity Low_complexity 1 65 0 1900 145 7 0 chr1 206778825 206779121 -35885232 - AluSx SINE Alu -14 298 1 553 274 129 40 chr1 206779334 206779736 -35884617 + L1ME4a LINE L1 5617 6054 -67 1718 139 0 4 chr1 206780130 206780388 -35883965 + AluSc SINE Alu 1 257 -52 3475 113 39 6 chr1 206780514 206781052 -35883301 + L1PB2 LINE L1 5593 6148 -3 265 79 0 0 chr1 206781064 206781102 -35883251 + L1MA3 LINE L1 1972 2009 -4840 840 108 0 23 chr1 206781102 206781232 -35883121 + FRAM SINE Alu 31 157 -19 4538 165 27 15 chr1 206781236 206782453 -35881900 + L1MA3 LINE L1 2046 3277 -3571 * 10453 168 32 36 chr1 206782441 206782645 -35881708 + L1MA3 LINE L1 3913 4116 -2891 222 62 0 0 chr1 206782645 206782677 -35881676 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 10453 168 32 36 chr1 206782677 206783207 -35881146 + L1MA3 LINE L1 4116 4647 -2360 2269 99 0 0 chr1 206783207 206783510 -35880843 + AluSp SINE Alu 1 303 -10 10453 168 32 36 chr1 206783510 206784040 -35880313 + L1MA3 LINE L1 4647 5178 -1829 2090 148 33 33 chr1 206784040 206784404 -35879949 + THE1B LTR MaLR 1 364 0 10453 168 32 36 chr1 206784404 206784553 -35879800 + L1MA3 LINE L1 5178 5326 -1681 1842 155 20 3 chr1 206784553 206784678 -35879675 + AluSx SINE Alu 1 122 -190 207 0 0 0 chr1 206784678 206784701 -35879652 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1842 155 20 3 chr1 206784701 206784879 -35879474 + AluSx SINE Alu 122 309 -3 10453 168 32 36 chr1 206784879 206786568 -35877785 + L1MA3 LINE L1 5326 7007 0 2357 167 31 5 chr1 206786584 206787096 -35877257 + L1M4 LINE L1 5211 5735 -443 21 0 0 0 chr1 206787179 206787200 -35877153 + AT_rich Low_complexity Low_complexity 1 21 0 5613 78 24 12 chr1 206787239 206788076 -35876277 - SVA Other Other -520 866 20 183 225 150 0 chr1 206788163 206788243 -35876110 - L2 LINE L2 -63 3250 3159 * 655 304 85 23 chr1 206788235 206788577 -35875776 + L2 LINE L2 2340 2702 -612 850 190 51 19 chr1 206789079 206789237 -35875116 - AluJb SINE Alu -15 297 135 2530 122 29 75 chr1 206789366 206789880 -35874473 + LTR10A LTR ERV1 80 612 -21 1368 183 4 12 chr1 206790126 206790378 -35873975 - MLT2D LTR ERVL -164 250 1 851 143 0 0 chr1 206790688 206790814 -35873539 + FLAM_C SINE Alu 1 126 -7 1873 123 3 29 chr1 206790857 206791165 -35873188 + AluJb SINE Alu 13 312 0 330 0 39 20 chr1 206791226 206791277 -35873076 + (TTCTC)n Simple_repeat Simple_repeat 4 55 0 1674 127 28 0 chr1 206792332 206792616 -35871737 - AluSx SINE Alu -20 292 1 847 270 45 10 chr1 206792898 206793300 -35871053 - LTR67 LTR ERVL -2 555 101 478 68 0 0 chr1 206793697 206793756 -35870597 + AluJ/FLAM SINE Alu 3 61 -251 319 241 9 69 chr1 206793875 206793991 -35870362 - L2 LINE L2 -3158 156 48 1829 158 0 13 chr1 206794241 206794545 -35869808 - AluJo SINE Alu -12 300 1 1134 101 0 48 chr1 206794554 206794742 -35869611 - AluSg/x SINE Alu 0 310 132 1993 104 0 7 chr1 206794742 206795031 -35869322 - AluSc SINE Alu -22 287 1 2157 80 0 10 chr1 206795042 206795342 -35869011 - AluSc SINE Alu -12 297 1 22 35 0 0 chr1 206795547 206795576 -35868777 + AT_rich Low_complexity Low_complexity 1 29 0 2139 123 0 0 chr1 206795747 206796047 -35868306 - AluSx SINE Alu -10 302 3 1892 119 11 0 chr1 206796393 206796670 -35867683 - AluSx SINE Alu -19 293 14 407 136 0 0 chr1 206797185 206797251 -35867102 - MLT2B1 LTR ERVL -454 66 1 790 227 67 29 chr1 206797251 206797489 -35866864 + L1MC4 LINE L1 6882 7128 -914 2065 60 0 0 chr1 206797498 206797748 -35866605 - AluY SINE Alu -61 250 1 764 201 69 69 chr1 206797753 206798147 -35866206 + L1MC4 LINE L1 7549 8032 -10 2108 109 0 3 chr1 206798155 206798459 -35865894 - AluSc SINE Alu -6 303 1 490 273 45 8 chr1 206798508 206798640 -35865713 - MIR SINE MIR -78 184 48 480 254 39 11 chr1 206799764 206799945 -35864408 - LTR33 LTR ERVL 0 521 336 1947 132 0 3 chr1 206800347 206800642 -35863711 + AluSx SINE Alu 1 294 -18 203 323 54 32 chr1 206800818 206800911 -35863442 - MIR SINE MIR -13 249 155 1131 200 39 61 chr1 206800911 206801328 -35863025 + MLT1B LTR MaLR 15 385 -11 563 274 92 55 chr1 206801489 206801609 -35862744 - MER102b DNA MER1_type -1087 341 227 2127 109 6 10 chr1 206801609 206801922 -35862431 + AluSx SINE Alu 1 312 0 563 274 92 55 chr1 206801922 206802093 -35862260 - MER102b DNA MER1_type -1201 227 39 216 0 0 0 chr1 206802203 206802227 -35862126 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 1963 136 10 0 chr1 206802237 206802724 -35861629 - AluSx SINE Alu 0 490 1 2244 85 0 0 chr1 206803541 206803835 -35860518 - AluSc SINE Alu -15 294 1 199 280 240 8 chr1 206804037 206804162 -35860191 + MIR3 SINE MIR 14 167 -41 555 215 9 0 chr1 206804164 206804271 -35860082 + MER5B DNA MER1_type 7 114 -64 201 214 0 24 chr1 206804310 206804352 -35860001 + MIR3 SINE MIR 152 192 -16 2065 113 31 0 chr1 206804358 206804651 -35859702 - AluSq SINE Alu -11 302 1 389 143 0 0 chr1 206804823 206804886 -35859467 - L2 LINE L2 0 3313 3251 554 223 15 107 chr1 206805326 206805532 -35858821 + MIR SINE MIR 76 262 0 762 295 132 3 chr1 206805628 206805970 -35858383 - MLT1J1 LTR MaLR 0 446 61 295 194 32 0 chr1 206805985 206806047 -35858306 + MLT1A2 LTR MaLR 7 70 -304 3386 60 2 7 chr1 206806222 206806659 -35857694 + LTR7 LTR ERV1 1 435 -15 16847 88 28 16 chr1 206806688 206809132 -35855221 + HERVH LTR ERV1 521 2995 -4718 902 136 27 0 chr1 206809111 206809258 -35855095 + HERVH LTR ERV1 3140 3290 -4423 * 1009 149 0 7 chr1 206809248 206809402 -35854951 + HERVH LTR ERV1 3492 3644 -4069 * 2517 168 12 0 chr1 206809401 206809806 -35854547 + HERVH LTR ERV1 4740 5149 -2564 1313 134 20 0 chr1 206809842 206810043 -35854310 + HERVH LTR ERV1 5615 5819 -1894 * 2552 82 45 13 chr1 206810041 206810421 -35853932 + HERVH LTR ERV1 7322 7713 0 3371 50 0 70 chr1 206810421 206810903 -35853450 + LTR7 LTR ERV1 1 448 -2 325 327 97 0 chr1 206810905 206811018 -35853335 - L1ME4a LINE L1 -256 5865 5742 183 100 0 0 chr1 206811852 206811882 -35852471 + (CA)n Simple_repeat Simple_repeat 2 31 0 246 62 0 0 chr1 206812448 206812480 -35851873 + (TC)n Simple_repeat Simple_repeat 2 33 0 351 0 0 0 chr1 206812480 206812519 -35851834 + (CA)n Simple_repeat Simple_repeat 1 39 0 355 192 10 111 chr1 206812698 206812797 -35851556 - MER5A DNA MER1_type -91 98 10 225 0 0 0 chr1 206813570 206813595 -35850758 + (T)n Simple_repeat Simple_repeat 1 25 0 2233 100 0 0 chr1 206813771 206814100 -35850253 - AluSx SINE Alu 0 329 1 180 0 0 0 chr1 206814816 206814836 -35849517 + (A)n Simple_repeat Simple_repeat 1 20 0 333 326 44 15 chr1 206814836 206814971 -35849382 - MER5A DNA MER1_type -50 139 1 203 289 0 0 chr1 206815322 206815374 -35848979 - MIR SINE MIR -55 207 156 214 370 120 0 chr1 206815880 206815980 -35848373 - MIR SINE MIR -64 144 33 183 309 36 0 chr1 206817411 206817466 -35846887 - MER5A DNA MER1_type 0 189 133 * 223 263 26 26 chr1 206817456 206817532 -35846821 + MIR SINE MIR 52 127 -135 * 282 247 106 12 chr1 206817525 206817610 -35846743 - MER5A DNA MER1_type -79 110 18 1637 183 115 3 chr1 206818048 206818371 -35845982 - MLT1A1 LTR MaLR 0 365 7 773 292 132 3 chr1 206818386 206818728 -35845625 + MLT1J1 LTR MaLR 61 446 0 465 259 14 99 chr1 206818824 206819036 -35845317 - MIR SINE MIR 0 262 69 389 143 0 0 chr1 206819462 206819525 -35844828 + L2 LINE L2 3251 3313 0 2069 100 35 0 chr1 206819697 206819986 -35844367 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr1 206819986 206820008 -35844345 + AT_rich Low_complexity Low_complexity 1 22 0 431 148 28 19 chr1 206820010 206820118 -35844235 + CT-rich Low_complexity Low_complexity 4 112 0 428 167 6 189 chr1 206820541 206820721 -35843632 - L2 LINE L2 0 3313 3167 736 178 104 0 chr1 206820722 206820857 -35843496 + AluJb SINE Alu 2 150 -162 329 107 0 18 chr1 206820864 206820920 -35843433 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 2191 82 13 13 chr1 206820920 206821224 -35843129 + AluSg SINE Alu 1 304 -6 24 0 0 0 chr1 206821708 206821732 -35842621 + AT_rich Low_complexity Low_complexity 1 24 0 1594 133 6 63 chr1 206822452 206822767 -35841586 - AluJb SINE Alu -15 297 1 786 228 6 0 chr1 206822933 206823095 -35841258 + MER41D LTR ERV1 395 557 0 1946 131 0 0 chr1 206824511 206824809 -35839544 + AluSx SINE Alu 1 298 -14 1138 133 58 11 chr1 206825076 206825264 -35839089 + AluSx SINE Alu 1 197 -115 819 158 0 0 chr1 206825430 206825563 -35838790 - FLAM_C SINE Alu 0 133 1 345 282 85 97 chr1 206825590 206825838 -35838515 + L2 LINE L2 3014 3258 -55 193 322 17 0 chr1 206825872 206825931 -35838422 + L2 LINE L2 2268 2327 -987 490 319 105 34 chr1 206825963 206826434 -35837919 + L2 LINE L2 2551 3053 -219 539 236 24 8 chr1 206826516 206826643 -35837710 - MER94 DNA DNA -5 129 1 2332 64 3 3 chr1 206826726 206826739 -35837614 - AluY SINE Alu -15 296 284 208 0 0 0 chr1 206826739 206826762 -35837591 + (TTTA)n Simple_repeat Simple_repeat 2 156 0 2332 64 3 3 chr1 206826762 206827044 -35837309 - AluY SINE Alu -26 285 1 4969 143 45 22 chr1 206827232 206828185 -35836168 - L1ME1 LINE L1 -2 6165 5197 217 276 190 17 chr1 206828196 206828312 -35836041 + L2 LINE L2 3129 3264 -8 2319 72 24 0 chr1 206828384 206828674 -35835679 + AluSg SINE Alu 1 297 -13 2095 29 37 0 chr1 206830212 206830453 -35833900 - L1PA4 LINE L1 0 6155 5906 2310 111 7 0 chr1 206830560 206830866 -35833487 - AluSx SINE Alu -4 308 1 964 127 73 88 chr1 206830893 206831066 -35833287 - AluSg/x SINE Alu -5 307 136 2431 89 0 0 chr1 206831066 206831369 -35832984 - AluSx SINE Alu -9 303 1 964 127 73 88 chr1 206831369 206831400 -35832953 - AluSg/x SINE Alu -176 136 106 28 0 0 0 chr1 206831910 206831938 -35832415 + AT_rich Low_complexity Low_complexity 1 28 0 1972 149 6 19 chr1 206831948 206832263 -35832090 + AluSx SINE Alu 1 311 -1 259 216 68 0 chr1 206832862 206832936 -35831417 - L1MC5 LINE L1 -104 7857 7779 2312 93 0 3 chr1 206832941 206833232 -35831121 - AluSq SINE Alu -23 290 1 24 0 0 0 chr1 206833232 206833256 -35831097 + AT_rich Low_complexity Low_complexity 1 24 0 729 205 0 0 chr1 206833256 206833373 -35830980 - FLAM_C SINE Alu -25 118 2 639 255 73 61 chr1 206833374 206833621 -35830732 - MIR SINE MIR -5 257 8 394 289 83 17 chr1 206833867 206834047 -35830306 + MIR SINE MIR 56 247 -15 23 92 0 0 chr1 206834110 206834175 -35830178 + AT_rich Low_complexity Low_complexity 1 65 0 1994 149 7 0 chr1 206834401 206834697 -35829656 - AluSx SINE Alu -14 298 1 550 269 139 50 chr1 206834910 206835312 -35829041 + L1ME4a LINE L1 5617 6054 -67 2054 141 0 0 chr1 206835706 206835997 -35828356 + AluY SINE Alu 1 291 -20 899 127 28 21 chr1 206836076 206836218 -35828135 + FLAM_C SINE Alu 1 143 0 891 301 111 57 chr1 206836401 206837158 -35827195 - L2 LINE L2 -10 3303 2503 546 122 0 24 chr1 206837198 206837280 -35827073 - AluJ/FRAM SINE Alu -10 302 223 323 283 11 0 chr1 206837290 206837382 -35826971 + MER102a DNA MER1_type 214 306 -24 294 284 12 0 chr1 206837460 206837541 -35826812 + CT-rich Low_complexity Low_complexity 2 83 0 266 217 134 83 chr1 206837544 206837701 -35826652 + MIR SINE MIR 8 172 -90 1723 156 52 7 chr1 206837753 206838042 -35826311 + AluJo SINE Alu 5 306 -6 221 238 0 79 chr1 206839409 206839472 -35824881 + MIR SINE MIR 184 241 -21 25 0 0 0 chr1 206839955 206839980 -35824373 + AT_rich Low_complexity Low_complexity 1 25 0 2035 98 3 83 chr1 206839985 206840310 -35824043 - AluSx SINE Alu -13 299 1 1320 128 64 91 chr1 206840445 206840580 -35823773 + MER33 DNA MER1_type 1 138 -2447 2231 112 3 0 chr1 206840580 206840883 -35823470 + AluSq SINE Alu 1 304 -9 1320 128 64 91 chr1 206840883 206841076 -35823277 + MER33 DNA MER1_type 138 320 -4 2197 125 3 0 chr1 206841779 206842083 -35822270 - AluSx SINE Alu -3 309 5 2300 99 0 0 chr1 206842089 206842382 -35821971 - AluSx SINE Alu -19 293 1 1949 137 0 32 chr1 206843195 206843509 -35820844 - AluJb SINE Alu -8 304 1 696 104 0 0 chr1 206843673 206843769 -35820584 + AluSp/q SINE Alu 211 306 -7 3318 171 53 50 chr1 206843770 206844829 -35819524 + L1MB7 LINE L1 5036 6161 -23 2523 58 0 3 chr1 206844836 206845144 -35819209 + AluY SINE Alu 1 307 -4 2157 112 14 0 chr1 206845175 206845462 -35818891 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr1 206845465 206845495 -35818858 + AT_rich Low_complexity Low_complexity 1 30 0 1550 187 0 45 chr1 206845515 206845661 -35818692 + AluJb SINE Alu 1 127 -185 2631 42 0 10 chr1 206845661 206845971 -35818382 + AluY SINE Alu 1 307 -4 1550 187 0 45 chr1 206845971 206846134 -35818219 + AluJb SINE Alu 127 296 -16 2002 140 0 14 chr1 206846427 206846583 -35817770 - AluSx SINE Alu -23 289 137 1952 93 75 0 chr1 206846583 206846861 -35817492 - AluSq SINE Alu -14 299 1 2002 140 0 14 chr1 206846861 206846997 -35817356 - AluSx SINE Alu -175 137 1 620 75 12 0 chr1 206847021 206847101 -35817252 - AluSg/x SINE Alu -21 291 211 2207 124 0 0 chr1 206847127 206847433 -35816920 - AluSg SINE Alu -3 307 2 1202 38 0 0 chr1 206847433 206847566 -35816787 - AluSg SINE Alu -177 133 1 598 289 48 48 chr1 206848002 206848158 -35816195 + MIR SINE MIR 14 172 -90 2426 70 0 13 chr1 206848158 206848460 -35815893 + AluSp SINE Alu 1 298 -15 598 289 48 48 chr1 206848460 206848552 -35815801 + MIR SINE MIR 171 262 0 680 165 70 0 chr1 206848991 206849106 -35815247 - AluJb SINE Alu 0 312 190 1466 93 0 0 chr1 206849138 206849331 -35815022 - AluSg/x SINE Alu -2 310 118 940 126 0 28 chr1 206849414 206849557 -35814796 - FLAM_C SINE Alu -4 139 1 303 208 156 0 chr1 206849592 206849669 -35814684 - L1ME LINE L1 -297 5824 5736 704 159 26 101 chr1 206849824 206850013 -35814340 - MER104 DNA MER2_type -3 177 3 2352 69 10 0 chr1 206850966 206851255 -35813098 - AluSp SINE Alu -16 297 6 593 213 22 44 chr1 206851635 206851771 -35812582 + FLAM_A SINE Alu 1 133 0 471 167 14 65 chr1 206851796 206851934 -35812419 + L1MB5 LINE L1 6044 6174 0 265 323 0 32 chr1 206852187 206852280 -35812073 + L3 LINE CR1 1477 1566 -11 290 311 126 20 chr1 206852454 206852605 -35811748 - L2 LINE L2 -21 3292 3126 1775 159 0 4 chr1 206852658 206852935 -35811418 + AluSx SINE Alu 1 276 -36 1873 130 17 27 chr1 206853074 206853366 -35810987 + AluSx SINE Alu 17 305 -7 559 278 28 0 chr1 206853581 206853725 -35810628 + MER41D LTR ERV1 383 530 -27 1997 115 0 16 chr1 206853932 206854236 -35810117 - AluSg SINE Alu -11 299 1 2124 113 3 3 chr1 206854350 206854642 -35809711 - AluSx SINE Alu -20 292 1 285 151 0 0 chr1 206854905 206854958 -35809395 + T-rich Low_complexity Low_complexity 1 53 0 343 181 0 36 chr1 206854958 206855041 -35809312 - MER61E LTR ERV1 -117 452 373 2062 138 0 0 chr1 206855813 206856103 -35808250 + AluSx SINE Alu 1 290 -22 187 352 80 0 chr1 206856192 206856280 -35808073 - MIR SINE MIR -84 124 30 216 0 0 0 chr1 206856493 206856517 -35807836 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 298 264 39 93 chr1 206856517 206856646 -35807707 + LTR67 LTR ERVL 23 144 -413 478 216 0 0 chr1 206856820 206856908 -35807445 + LTR67 LTR ERVL 431 518 -39 1925 164 7 0 chr1 206856908 206857207 -35807146 + AluJo SINE Alu 1 301 -11 552 202 39 10 chr1 206857434 206857538 -35806815 - FLAM_C SINE Alu -35 108 2 1913 127 4 0 chr1 206857893 206858161 -35806192 - AluSq SINE Alu -4 309 41 1253 193 0 0 chr1 206858168 206858375 -35805978 - AluJb SINE Alu -19 293 87 1875 159 3 0 chr1 206858622 206858924 -35805429 - AluJo SINE Alu -9 303 1 17845 23 0 0 chr1 206858954 206861017 -35803336 - L1P LINE L1 -1142 5004 2942 3046 27 0 0 chr1 206861017 206861335 -35803018 + L1PA2 LINE L1 5819 6154 -1 192 77 0 0 chr1 206861355 206861381 -35802972 + (A)n Simple_repeat Simple_repeat 1 26 0 1268 128 28 0 chr1 206861951 206862131 -35802222 + AluSx SINE Alu 9 193 -119 1263 147 55 9 chr1 206862553 206862771 -35801582 - AluJb SINE Alu -18 294 67 464 97 0 0 chr1 206862771 206862843 -35801510 + AluSp/q SINE Alu 240 311 -2 2140 131 20 0 chr1 206863603 206863909 -35800444 + AluSp SINE Alu 1 312 -1 2269 101 3 0 chr1 206863962 206864268 -35800085 - AluSg SINE Alu -3 307 1 595 108 0 0 chr1 206864640 206864723 -35799630 - AluSc SINE Alu -15 294 212 664 247 74 32 chr1 206865525 206865715 -35798638 - MIR SINE MIR -30 232 35 24 0 0 0 chr1 206865931 206865955 -35798398 + AT_rich Low_complexity Low_complexity 1 24 0 2400 73 0 0 chr1 206865988 206866276 -35798077 - AluY SINE Alu -7 304 17 1520 150 88 22 chr1 206866291 206866564 -35797789 - AluJb SINE Alu -21 291 1 2115 97 18 0 chr1 206866597 206866898 -35797455 - AluSp SINE Alu 0 306 1 456 229 111 35 chr1 206867040 206867184 -35797169 - MIR SINE MIR -56 206 52 1968 115 27 3 chr1 206867730 206868026 -35796327 - AluSx SINE Alu -9 303 1 359 286 59 53 chr1 206868582 206868746 -35795607 - MER5A DNA MER1_type 0 178 22 22 70 0 0 chr1 206868808 206868851 -35795502 + AT_rich Low_complexity Low_complexity 1 43 0 2043 120 13 16 chr1 206868951 206869259 -35795094 - AluSx SINE Alu -5 307 1 315 253 72 0 chr1 206869280 206869363 -35794990 + HsTC2 DNA Tc2 1 89 -1809 237 132 79 0 chr1 206869383 206869421 -35794932 + HsTC2 DNA Tc2 1230 1270 -628 1053 221 132 61 chr1 206869592 206869872 -35794481 - AluJb SINE Alu -2 300 1 1047 183 0 0 chr1 206870293 206870468 -35793885 - AluJb SINE Alu -1 311 137 28 0 0 0 chr1 206871176 206871204 -35793149 + AT_rich Low_complexity Low_complexity 1 28 0 1880 150 13 19 chr1 206871214 206871527 -35792826 + AluSx SINE Alu 1 311 -1 409 208 13 101 chr1 206872126 206872205 -35792148 - L1MC5 LINE L1 -104 7857 7795 2147 90 14 7 chr1 206872205 206872493 -35791860 - AluSq SINE Alu -23 290 1 409 208 13 101 chr1 206872493 206872562 -35791791 - L1MC5 LINE L1 -166 7795 7722 2349 117 0 0 chr1 206872704 206873013 -35791340 - AluSg SINE Alu -1 309 1 252 100 0 0 chr1 206873094 206873134 -35791219 + (CA)n Simple_repeat Simple_repeat 1 40 0 188 364 43 31 chr1 206873288 206873450 -35790903 - L2 LINE L2 0 3313 3150 2152 123 10 3 chr1 206873746 206874046 -35790307 + AluSx SINE Alu 1 302 -10 1533 133 0 0 chr1 206874099 206874309 -35790044 - AluSx SINE Alu -39 273 64 4804 93 23 27 chr1 206874309 206874554 -35789799 - L1PA11 LINE L1 -108 6066 5821 2294 95 17 0 chr1 206874554 206874850 -35789503 - AluSq SINE Alu -12 301 1 4804 93 23 27 chr1 206874850 206875313 -35789040 - L1PA11 LINE L1 -353 5821 5361 853 82 25 0 chr1 206875314 206875436 -35788917 - AluY SINE Alu -13 298 174 23 0 0 0 chr1 206875439 206875462 -35788891 + AT_rich Low_complexity Low_complexity 1 23 0 1563 44 0 6 chr1 206875506 206875687 -35788666 - AluY SINE Alu -131 180 1 1276 107 54 40 chr1 206875687 206875911 -35788442 - L1PA11 LINE L1 -779 5367 5141 559 259 88 73 chr1 206875915 206876159 -35788194 + L1ME3A LINE L1 3978 4217 -1929 864 207 106 48 chr1 206876159 206876367 -35787986 + MER58A DNA MER1_type 1 220 -4 559 259 88 73 chr1 206876367 206876394 -35787959 + L1ME3A LINE L1 4217 4242 -1904 2231 54 0 96 chr1 206876394 206876728 -35787625 + AluY SINE Alu 1 302 -9 559 259 88 73 chr1 206876728 206876945 -35787408 + L1ME3A LINE L1 4242 4474 -1672 1344 167 0 10 chr1 206876957 206877175 -35787178 + AluJb SINE Alu 81 293 -19 1822 152 0 4 chr1 206877761 206878030 -35786323 - AluSx SINE Alu -44 268 1 493 202 128 27 chr1 206878457 206878645 -35785708 + L1ME3A LINE L1 4631 4837 -1309 2012 149 7 0 chr1 206878688 206878989 -35785364 + AluSx SINE Alu 1 303 -9 363 286 27 18 chr1 206879000 206879112 -35785241 - MLT1I LTR MaLR -49 360 248 271 243 76 139 chr1 206879295 206879472 -35784881 + L1ME3A LINE L1 4909 5095 -1051 282 71 0 0 chr1 206879472 206879514 -35784839 - Alu SINE Alu 0 308 267 2259 76 0 76 chr1 206879516 206879833 -35784520 - AluSg SINE Alu -17 293 1 271 243 76 139 chr1 206879833 206880044 -35784309 + L1ME3A LINE L1 5096 5314 -832 386 293 126 25 chr1 206880095 206880582 -35783771 + L1ME3A LINE L1 5387 5927 -243 29 47 0 0 chr1 206880786 206880829 -35783524 + AT_rich Low_complexity Low_complexity 1 43 0 843 127 8 0 chr1 206880963 206881081 -35783272 + AluSg/x SINE Alu 174 292 -20 1394 168 218 15 chr1 206881754 206882166 -35782187 - LTR54B LTR ERV1 -2 496 1 2074 113 32 0 chr1 206882197 206882480 -35781873 + AluSp SINE Alu 1 292 -21 464 132 0 0 chr1 206882514 206882590 -35781763 + AluSc SINE Alu 226 301 -8 2016 163 24 0 chr1 206882828 206883165 -35781188 - MER7A DNA MER2_type -2 344 2 2567 59 0 3 chr1 206883716 206884020 -35780333 - AluY SINE Alu -7 304 2 2051 152 0 3 chr1 206884210 206884519 -35779834 - AluSx SINE Alu -4 308 1 1954 154 0 7 chr1 206884699 206884998 -35779355 + AluSx SINE Alu 6 302 -10 203 158 0 0 chr1 206885171 206885209 -35779144 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr1 206886338 206886359 -35777994 + AT_rich Low_complexity Low_complexity 1 21 0 1684 183 3 25 chr1 206886851 206887168 -35777185 - AluJo SINE Alu -2 310 1 1997 125 42 0 chr1 206887661 206887949 -35776404 + AluSx SINE Alu 1 300 -12 572 296 66 4 chr1 206887953 206888179 -35776174 + MIR SINE MIR 23 262 0 1238 113 70 47 chr1 206888418 206888536 -35775817 - MER2 DNA MER2_type -121 224 97 1402 149 36 0 chr1 206888536 206888757 -35775596 + MER30 DNA MER1_type 1 229 -1 1238 113 70 47 chr1 206888757 206888851 -35775502 - MER2 DNA MER2_type -248 97 7 1688 127 6 118 chr1 206889302 206889632 -35774721 + AluSx SINE Alu 1 293 -9 12721 118 32 27 chr1 206889801 206891230 -35773123 + Tigger1 DNA MER2_type 374 1795 -623 2221 86 0 30 chr1 206891230 206891532 -35772821 - AluY SINE Alu -18 293 1 12721 118 32 27 chr1 206891532 206891946 -35772407 + Tigger1 DNA MER2_type 1795 2205 -213 2371 91 3 3 chr1 206891946 206892253 -35772100 - AluSq SINE Alu -6 307 1 12721 118 32 27 chr1 206892253 206892382 -35771971 + Tigger1 DNA MER2_type 2205 2360 -58 1869 109 0 4 chr1 206892382 206892629 -35771724 - AluSc SINE Alu -62 247 2 12721 118 32 27 chr1 206892629 206892689 -35771664 + Tigger1 DNA MER2_type 2360 2418 0 206 342 56 43 chr1 206892692 206892853 -35771500 + L2 LINE L2 2948 3110 -162 260 154 0 0 chr1 206894873 206894912 -35769441 - MSTB LTR MaLR 0 426 388 1094 83 0 0 chr1 206894913 206895046 -35769307 + AluSq/x SINE Alu 1 133 -179 1895 122 25 18 chr1 206895063 206895384 -35768969 + AluSg SINE Alu 1 323 0 2015 152 14 0 chr1 206895390 206895516 -35768837 + AluSx SINE Alu 1 124 -188 420 20 0 0 chr1 206895516 206895565 -35768788 + (CA)n Simple_repeat Simple_repeat 2 50 0 2015 152 14 0 chr1 206895565 206895735 -35768618 + AluSx SINE Alu 124 301 -11 2024 160 83 0 chr1 206895735 206896097 -35768256 - MSTB LTR MaLR -34 392 1 366 343 27 0 chr1 206896205 206896351 -35768002 + MIR3 SINE MIR 31 180 -28 1551 157 24 114 chr1 206896872 206897249 -35767104 - MER7A DNA MER2_type 0 346 6 23 33 0 0 chr1 206897536 206897566 -35766787 + AT_rich Low_complexity Low_complexity 1 30 0 3315 222 76 19 chr1 206897752 206899288 -35765065 + L1M3c LINE L1 1 1449 -4761 2038 146 0 28 chr1 206899288 206899609 -35764744 - AluSx SINE Alu 0 312 1 3315 222 76 19 chr1 206899609 206900482 -35763871 + L1M3c LINE L1 1449 2271 -3939 2406 170 40 2 chr1 206900638 206901092 -35763261 - L1MB3 LINE L1 -137 6046 5576 188 316 82 0 chr1 206901562 206901660 -35762693 - L2 LINE L2 -1 3271 3166 202 268 0 0 chr1 206902420 206902476 -35761877 + C-rich Low_complexity Low_complexity 2 57 0 2236 88 7 29 chr1 206902947 206903254 -35761099 + AluSg SINE Alu 1 300 -10 310 286 149 19 chr1 206903400 206903554 -35760799 - MIR SINE MIR -73 189 16 308 98 0 0 chr1 206903595 206903646 -35760707 - AluSp/q SINE Alu 0 303 253 5964 123 26 6 chr1 206906277 206907185 -35757168 - Tigger1 DNA MER2_type -1490 928 2 969 180 59 84 chr1 206907402 206907481 -35756872 - LTR37A LTR ERV1 -2 424 345 2281 113 0 7 chr1 206907481 206907783 -35756570 - AluSx SINE Alu -12 300 1 969 180 59 84 chr1 206907783 206907906 -35756447 - LTR37A LTR ERV1 -81 345 230 2120 101 10 14 chr1 206907906 206908236 -35756117 - AluSg SINE Alu 0 310 9 969 180 59 84 chr1 206908236 206908354 -35755999 - LTR37A LTR ERV1 -196 230 111 3089 176 65 30 chr1 206908775 206908977 -35755376 - MER82 DNA MER2_type 0 653 460 1563 173 0 0 chr1 206908977 206909232 -35755121 - AluJb SINE Alu -47 265 11 3089 176 65 30 chr1 206909232 206909659 -35754694 - MER82 DNA MER2_type -193 460 2 1834 102 3 37 chr1 206910025 206910319 -35754034 + AluSq SINE Alu 28 311 -2 541 228 6 84 chr1 206910512 206910603 -35753750 + MIR SINE MIR 65 162 -100 2024 134 43 0 chr1 206910603 206910719 -35753634 + AluSp SINE Alu 1 110 -203 2216 73 0 31 chr1 206910719 206911007 -35753346 + AluY SINE Alu 1 279 -32 411 21 0 0 chr1 206911009 206911057 -35753296 + (CA)n Simple_repeat Simple_repeat 2 49 0 2024 134 43 0 chr1 206911057 206911236 -35753117 + AluSp SINE Alu 110 312 -1 541 228 6 84 chr1 206911236 206911311 -35753042 + MIR SINE MIR 162 218 -44 742 290 6 0 chr1 206911446 206911622 -35752731 - MER45A DNA AcHobo -1 177 1 917 85 50 28 chr1 206911727 206911868 -35752485 + HERVH LTR ERV1 2688 2831 -4882 6826 135 13 11 chr1 206911868 206913483 -35750870 + HERVH LTR ERV1 3358 4910 -2287 1519 162 19 0 chr1 206913483 206913748 -35750605 + HERVH LTR ERV1 5747 6016 -1697 * 3540 113 16 20 chr1 206913741 206914300 -35750053 + HERVH LTR ERV1 7157 7713 0 1243 196 130 68 chr1 206914300 206914724 -35749629 + LTR7 LTR ERV1 1 450 0 291 268 150 33 chr1 206915486 206915639 -35748714 + MIR3 SINE MIR 4 174 -34 265 320 41 0 chr1 206915970 206916067 -35748286 + MIR SINE MIR 41 141 -67 245 350 19 10 chr1 206916231 206916334 -35748019 - MIR SINE MIR -68 140 37 211 282 0 14 chr1 206916650 206916721 -35747632 + (CCCTAA)n Simple_repeat Simple_repeat 2 71 0 1327 199 60 18 chr1 206917452 206917734 -35746619 + AluJo SINE Alu 1 294 -18 276 262 106 28 chr1 206918354 206918495 -35745858 + MIR3 SINE MIR 19 170 -38 837 191 69 6 chr1 206918861 206919034 -35745319 - MER5A DNA MER1_type -5 184 1 2269 107 7 0 chr1 206922302 206922611 -35741742 - AluSq SINE Alu -2 311 1 225 0 0 0 chr1 206922848 206922873 -35741480 + (TC)n Simple_repeat Simple_repeat 2 26 0 898 251 20 77 chr1 206923866 206924165 -35740188 + MLT1J LTR MaLR 1 282 -229 2189 125 10 0 chr1 206924189 206924486 -35739867 + AluSx SINE Alu 1 300 -12 1844 151 0 60 chr1 206924565 206924882 -35739471 + AluJb SINE Alu 1 298 -14 655 268 75 25 chr1 206925805 206926044 -35738309 - MIR SINE MIR -3 259 9 257 291 157 8 chr1 206926098 206926232 -35738121 + L2 LINE L2 2907 3060 -212 1564 207 70 44 chr1 206926285 206926671 -35737682 + MSTD LTR MaLR 1 396 0 190 231 0 0 chr1 206929688 206929727 -35734626 - MIR3 SINE MIR -7 201 163 272 286 48 24 chr1 206929764 206929890 -35734463 - MER20B DNA MER1_type -601 182 54 9483 183 71 18 chr1 206930169 206932272 -35732081 + L1 LINE L1 2796 5027 -1119 1584 180 3 14 chr1 206932272 206932580 -35731773 + AluJb SINE Alu 1 305 0 9483 183 71 18 chr1 206932580 206932707 -35731646 + L1 LINE L1 5027 5146 -1000 787 156 0 8 chr1 206932724 206932852 -35731501 - Charlie1a DNA MER1_type -1286 169 43 1686 128 13 35 chr1 206934531 206934607 -35729746 + AluSx SINE Alu 1 77 -235 2541 97 76 14 chr1 206934607 206935029 -35729324 - LTR7 LTR ERV1 -2 448 1 1686 128 13 35 chr1 206935029 206935265 -35729088 + AluSx SINE Alu 77 306 -6 2228 74 0 3 chr1 206935283 206935579 -35728774 + AluY SINE Alu 1 295 -16 632 199 52 7 chr1 206935615 206935751 -35728602 + FLAM_A SINE Alu 1 142 0 34 32 0 32 chr1 206935751 206935772 -35728581 + AT_rich Low_complexity Low_complexity 1 21 -40 1956 125 14 0 chr1 206935772 206936068 -35728285 - AluSx SINE Alu -12 300 1 34 32 0 32 chr1 206936068 206936109 -35728244 + AT_rich Low_complexity Low_complexity 21 61 0 241 281 0 16 chr1 206936238 206936302 -35728051 - L2 LINE L2 0 3272 3210 675 153 27 33 chr1 206936310 206936460 -35727893 - L1MA10 LINE L1 -3 6331 6183 1649 189 3 3 chr1 206936567 206936863 -35727490 - AluJb SINE Alu -16 296 1 377 236 0 81 chr1 206936870 206936993 -35727360 - L1ME2 LINE L1 -226 5938 5826 21 0 0 0 chr1 206937062 206937083 -35727270 + AT_rich Low_complexity Low_complexity 1 21 0 613 188 58 176 chr1 206937083 206937190 -35727163 - L1ME2 LINE L1 -352 5814 5696 1679 145 13 29 chr1 206937190 206937500 -35726853 + AluJb SINE Alu 1 305 -7 180 0 0 0 chr1 206937510 206937530 -35726823 + (CAA)n Simple_repeat Simple_repeat 2 21 0 613 188 58 176 chr1 206937530 206937740 -35726613 - L1ME2 LINE L1 -480 5686 5525 1922 208 26 33 chr1 206937846 206938274 -35726079 + MLT2B1 LTR ERVL 96 520 0 970 194 66 186 chr1 206938281 206938328 -35726025 - L1MC4 LINE L1 -1163 6879 6828 2092 107 10 0 chr1 206938328 206938626 -35725727 - AluSg SINE Alu -9 301 1 970 194 66 186 chr1 206938626 206939109 -35725244 - L1MC4 LINE L1 -1214 6828 6413 631 353 5 14 chr1 206939171 206939389 -35724964 + LTR67 LTR ERVL 41 256 -301 618 314 14 18 chr1 206939506 206939726 -35724627 + LTR67 LTR ERVL 330 548 -9 1923 148 0 13 chr1 206939790 206940100 -35724253 - AluJb SINE Alu -6 306 1 2056 112 7 0 chr1 206940143 206940438 -35723915 - AluSp SINE Alu -3 310 14 562 168 308 7 chr1 206940496 206940639 -35723714 + MER5A DNA MER1_type 4 189 0 277 266 25 52 chr1 206940639 206940784 -35723569 - LTR16C LTR ERVL -16 474 292 379 342 26 0 chr1 206941248 206941403 -35722950 - HERV16 LTR ERVL -1233 4531 4373 204 40 0 0 chr1 206941468 206941493 -35722860 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1704 162 0 24 chr1 206941925 206942222 -35722131 - AluJo SINE Alu -22 290 1 1463 319 48 12 chr1 206942238 206942836 -35721517 - HERV16 LTR ERVL -730 5034 4415 505 224 0 95 chr1 206942899 206943046 -35721307 - MER94 DNA DNA 0 134 2 623 371 26 38 chr1 206943047 206943331 -35721022 - HERV16 LTR ERVL -3444 1552 1275 1976 145 0 7 chr1 206943331 206943634 -35720719 - AluSx SINE Alu -11 301 1 623 371 26 38 chr1 206943634 206943855 -35720498 - HERV16 LTR ERVL -3721 1275 1053 2820 176 2 46 chr1 206943917 206944481 -35719872 - MLT2B3 LTR ERVL 0 554 16 28 0 0 0 chr1 206945548 206945576 -35718777 + AT_rich Low_complexity Low_complexity 1 28 0 1945 125 0 7 chr1 206945576 206945872 -35718481 - AluSx SINE Alu -18 294 1 601 242 120 95 chr1 206946233 206946799 -35717554 - L1MC5 LINE L1 -10 7951 7372 484 159 0 11 chr1 206946824 206946912 -35717441 - AluJb SINE Alu -179 133 47 276 245 47 19 chr1 206946913 206947019 -35717334 - L1MC5 LINE L1 -591 7370 7262 486 321 134 11 chr1 206947121 206947479 -35716874 - L1MEd LINE L1 -2346 3783 3382 1860 143 17 0 chr1 206947486 206947773 -35716580 + AluSq SINE Alu 1 292 -21 1112 155 0 10 chr1 206947779 206947972 -35716381 - AluJb SINE Alu -2 310 120 887 263 68 52 chr1 206948001 206948370 -35715983 - L1MEd LINE L1 -2739 3390 3016 1746 148 7 20 chr1 206949366 206949670 -35714683 - AluJb SINE Alu -12 300 1 996 279 64 54 chr1 206949676 206950084 -35714269 - L1MEd LINE L1 -5317 802 391 335 286 48 0 chr1 206950120 206950225 -35714128 + MIR SINE MIR 153 262 0 1357 173 7 44 chr1 206950280 206950390 -35713963 + AluJb SINE Alu 1 114 -198 2218 123 128 31 chr1 206950390 206950740 -35713613 + MSTA LTR MaLR 1 394 -34 2182 110 0 0 chr1 206950740 206951048 -35713305 - AluSg SINE Alu -2 308 1 2218 123 128 31 chr1 206951048 206951087 -35713266 + MSTA LTR MaLR 394 428 0 1357 173 7 44 chr1 206951087 206951247 -35713106 + AluJb SINE Alu 114 261 -51 1915 153 126 79 chr1 206951583 206951628 -35712725 - MLT1C LTR MaLR 0 467 426 2093 118 0 3 chr1 206951628 206951933 -35712420 + AluSx SINE Alu 3 306 -6 1915 153 126 79 chr1 206951933 206952332 -35712021 - MLT1C LTR MaLR -41 426 2 447 283 83 22 chr1 206952592 206952772 -35711581 - MIR SINE MIR -25 237 47 1233 190 12 97 chr1 206953969 206954109 -35710244 - AluJo SINE Alu -9 303 153 5440 103 24 0 chr1 206954109 206954237 -35710116 - L1PB2 LINE L1 -2 6149 6026 2278 97 0 3 chr1 206954237 206954547 -35709806 - AluSx SINE Alu -3 309 1 5440 103 24 0 chr1 206954547 206954805 -35709548 - L1PB2 LINE L1 -125 6026 5776 2373 77 0 3 chr1 206954805 206955116 -35709237 - AluY SINE Alu -1 310 1 5440 103 24 0 chr1 206955116 206955954 -35708399 - L1PB2 LINE L1 -375 5776 4936 1233 190 12 97 chr1 206955954 206956144 -35708209 - AluJo SINE Alu -159 153 1 195 224 20 0 chr1 206956201 206956250 -35708103 - MIR SINE MIR -137 71 22 448 301 40 25 chr1 206956492 206956691 -35707662 - MIR3 SINE MIR -1 207 6 221 28 83 0 chr1 206957632 206957668 -35706685 + (CCCCAG)n Simple_repeat Simple_repeat 5 43 0 233 56 0 28 chr1 206958469 206958505 -35705848 + (CCG)n Simple_repeat Simple_repeat 2 36 0 221 390 29 7 chr1 206959884 206960020 -35704333 - L3b LINE CR1 -153 1430 1292 292 343 34 14 chr1 206960306 206960452 -35703901 - L3 LINE CR1 -111 1466 1318 500 283 49 54 chr1 206960539 206960744 -35703609 + MIR3 SINE MIR 2 205 -3 461 293 120 80 chr1 206960847 206960890 -35703463 - L3 LINE CR1 -340 1237 1197 1624 183 3 13 chr1 206960890 206961201 -35703152 - AluJb SINE Alu -4 308 1 461 293 120 80 chr1 206961201 206961418 -35702935 - L3 LINE CR1 -380 1197 990 2142 104 3 0 chr1 206961418 206961706 -35702647 - AluSg SINE Alu -21 289 1 461 293 120 80 chr1 206961706 206961929 -35702424 - L3 LINE CR1 -587 990 734 566 275 62 46 chr1 206963608 206963837 -35700516 - L1ME LINE L1 -557 5564 5329 2704 133 2 42 chr1 206963837 206964310 -35700043 - L1MB3 LINE L1 -7 6176 5723 566 275 62 46 chr1 206964310 206964387 -35699966 - L1ME LINE L1 -792 5329 5255 1751 131 64 0 chr1 206964606 206964888 -35699465 - AluSx SINE Alu -12 300 1 627 230 61 43 chr1 206964898 206965116 -35699237 - MIR SINE MIR -11 251 32 1832 124 0 49 chr1 206965710 206966017 -35698336 - AluJo SINE Alu -20 292 1 180 97 0 0 chr1 206966255 206966286 -35698067 + (TG)n Simple_repeat Simple_repeat 2 32 0 270 125 0 0 chr1 206966408 206966456 -35697897 + (CA)n Simple_repeat Simple_repeat 1 48 0 907 79 32 0 chr1 206967549 206967675 -35696678 - AluJb SINE Alu -181 131 2 332 248 15 58 chr1 206968455 206968592 -35695761 + CT-rich Low_complexity Low_complexity 4 134 0 1808 139 14 0 chr1 206968599 206968879 -35695474 - AluSx SINE Alu -22 290 7 232 321 64 18 chr1 206971138 206971247 -35693106 + MER5A DNA MER1_type 73 186 -3 430 168 18 9 chr1 206971736 206971849 -35692504 + (TCCA)n Simple_repeat Simple_repeat 4 117 0 1838 157 17 0 chr1 206971907 206972200 -35692153 - AluSx SINE Alu -14 298 1 759 180 8 0 chr1 206972249 206972371 -35691982 + FLAM_A SINE Alu 1 123 -10 1409 126 8 72 chr1 206973766 206974029 -35690324 - AluSx SINE Alu -66 246 1 271 346 86 44 chr1 206974411 206974844 -35689509 - L2 LINE L2 -433 2881 2431 354 292 276 22 chr1 206974900 206975345 -35689008 - L2 LINE L2 -723 2591 2034 2144 75 13 13 chr1 206976172 206976477 -35687876 - AluY SINE Alu -6 305 1 420 86 0 0 chr1 206976481 206976539 -35687814 - Alu SINE Alu -20 290 233 820 75 0 9 chr1 206976539 206976645 -35687708 - AluSq/x SINE Alu -171 142 38 2184 88 0 3 chr1 206977853 206978149 -35686204 + AluSx SINE Alu 1 295 -17 2230 103 3 7 chr1 206979261 206979563 -35684790 + AluSx SINE Alu 1 301 -11 2091 102 7 3 chr1 206980237 206980553 -35683800 + AluSp SINE Alu 2 318 0 236 290 9 28 chr1 206982043 206982150 -35682203 + A-rich Low_complexity Low_complexity 2 106 0 2445 63 3 0 chr1 206982261 206982562 -35681791 + AluY SINE Alu 1 302 -9 1916 147 14 7 chr1 206982578 206982871 -35681482 + AluJb SINE Alu 1 295 -17 315 0 0 0 chr1 206982871 206982906 -35681447 + (TA)n Simple_repeat Simple_repeat 1 35 0 340 289 0 0 chr1 206984144 206984220 -35680133 - L2 LINE L2 -4 3268 3193 1708 169 6 35 chr1 206984343 206984656 -35679697 + AluJb SINE Alu 1 304 -8 2484 62 0 16 chr1 206984755 206985060 -35679293 - AluY SINE Alu -11 300 1 1913 112 25 7 chr1 206985130 206985406 -35678947 - AluSg1 SINE Alu -28 281 1 961 120 23 0 chr1 206985415 206985548 -35678805 - AluJo SINE Alu -176 136 1 32 26 0 0 chr1 206985678 206985717 -35678636 + AT_rich Low_complexity Low_complexity 1 39 0 587 297 153 9 chr1 206986245 206986467 -35677886 - MIR SINE MIR -8 254 1 14298 126 39 7 chr1 206987469 206988870 -35675483 - Tigger1 DNA MER2_type -1 2417 909 1893 144 10 10 chr1 206988870 206989169 -35675184 + AluJb SINE Alu 1 299 -13 14298 126 39 7 chr1 206989169 206990109 -35674244 - Tigger1 DNA MER2_type -1509 909 1 963 166 0 28 chr1 206990149 206990330 -35674023 + AluSx SINE Alu 1 176 -136 248 164 82 16 chr1 206991047 206991108 -35673245 + MER103 DNA DNA 49 113 -53 1110 274 157 13 chr1 206991127 206991606 -35672747 + L2 LINE L2 2759 3308 -5 2333 80 7 10 chr1 206991606 206991908 -35672445 + AluY SINE Alu 1 301 -10 261 326 39 23 chr1 206991983 206992112 -35672241 - L2 LINE L2 -5 3267 3137 1257 161 5 10 chr1 206992342 206992541 -35671812 + AluJb SINE Alu 108 305 -7 2376 97 3 3 chr1 206993276 206993587 -35670766 - AluSp SINE Alu -2 311 1 21 0 0 0 chr1 206994881 206994902 -35669451 + AT_rich Low_complexity Low_complexity 1 21 0 274 218 0 26 chr1 206995026 206995104 -35669249 + L1ME4a LINE L1 5965 6040 -81 2400 88 0 16 chr1 206995192 206995510 -35668843 + AluSq SINE Alu 1 313 0 2430 76 0 3 chr1 206995713 206996015 -35668338 + AluY SINE Alu 1 301 -10 499 290 135 10 chr1 206996971 206997178 -35667175 - MIR SINE MIR -7 255 23 25 0 0 0 chr1 206999816 206999841 -35664512 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 207000444 207000466 -35663887 + GC_rich Low_complexity Low_complexity 1 22 0 2330 78 3 0 chr1 207000924 207001219 -35663134 - AluSq SINE Alu 0 313 18 412 163 28 106 chr1 207051219 207051360 -35612993 - HAL1 LINE L1 -1021 1486 1357 523 297 87 40 chr1 207051403 207051726 -35612627 - HAL1 LINE L1 -1777 730 393 748 132 0 0 chr1 207052157 207052278 -35612075 - MER41B LTR ERV1 0 635 515 1444 119 10 0 chr1 207052278 207052479 -35611874 + AluSx SINE Alu 1 203 -109 2312 86 3 7 chr1 207052812 207053113 -35611240 - AluSx SINE Alu -12 300 1 235 368 53 23 chr1 207053227 207053360 -35610993 + MIR SINE MIR 15 151 -111 189 69 0 0 chr1 207053932 207053950 -35610403 + (A)n Simple_repeat Simple_repeat 1 21 -8 1384 133 20 8 chr1 207053950 207054205 -35610148 + L1MA1 LINE L1 6045 6302 0 189 69 0 0 chr1 207054205 207054215 -35610138 + (A)n Simple_repeat Simple_repeat 20 29 0 997 281 69 67 chr1 207054277 207054843 -35609510 - L1MEc LINE L1 -5794 602 36 2133 104 3 3 chr1 207054843 207055131 -35609222 - AluSg SINE Alu -22 288 1 338 178 14 0 chr1 207055140 207055213 -35609140 + Charlie5 DNA MER1_type 2551 2624 0 216 358 68 27 chr1 207055214 207055362 -35608991 - L2 LINE L2 -1093 2221 2068 341 155 0 0 chr1 207055374 207055432 -35608921 + AluJ/FLAM SINE Alu 1 58 -244 993 225 19 0 chr1 207055659 207055872 -35608481 + Charlie1a DNA MER1_type 5 221 -1234 4895 163 45 34 chr1 207055905 207057039 -35607314 + Charlie1a DNA MER1_type 287 1432 -23 1255 253 86 14 chr1 207057139 207057629 -35606724 - L1 LINE L1 -2198 3948 3424 1761 180 26 51 chr1 207057630 207058097 -35606256 - L1M4 LINE L1 -5300 1242 788 806 149 8 15 chr1 207058108 207058242 -35606111 - FLAM_C SINE Alu 0 133 1 818 246 0 0 chr1 207058245 207058412 -35605941 - AluSg/x SINE Alu -3 309 143 1745 90 4 0 chr1 207058412 207058657 -35605696 - LTR14 LTR ERVK -2 546 301 6819 146 14 6 chr1 207058757 207060664 -35603689 - L1MA3 LINE L1 -398 5907 3985 1333 115 4 2 chr1 207060666 207060910 -35603443 - AluSc SINE Alu -12 297 1 1200 138 18 0 chr1 207060910 207061127 -35603226 - L1MA3 LINE L1 -2156 3990 3770 19848 61 3 1 chr1 207061227 207063846 -35600507 - HERVK9 LTR ERVK -1369 4547 1923 4572 63 8 0 chr1 207063946 207064544 -35599809 + HERVK9 LTR ERVK 5032 5634 -282 1394 45 4 1 chr1 207064629 207064887 -35599466 + HERVK9 LTR ERVK 5635 5916 0 3549 101 0 4 chr1 207064887 207065391 -35598962 + MER9 LTR ERVK 1 502 -9 1911 121 4 7 chr1 207065391 207065664 -35598689 - AluSg SINE Alu -38 272 1 1395 176 8 0 chr1 207065943 207066205 -35598148 - MER41B LTR ERV1 -371 264 1 5802 159 45 14 chr1 207067883 207069548 -35594805 - L1MC1 LINE L1 0 6333 4627 1627 65 0 0 chr1 207069872 207070088 -35594265 + L1P LINE L1 11 226 -5920 1899 125 0 42 chr1 207070544 207070697 -35593656 - AluSx SINE Alu -36 276 139 2385 76 3 13 chr1 207070697 207071011 -35593342 - AluY SINE Alu 0 311 1 1899 125 0 42 chr1 207071011 207071145 -35593208 - AluSx SINE Alu -173 139 1 231 227 15 15 chr1 207072050 207072116 -35592237 - MLT1K LTR MaLR -4 584 519 459 0 0 0 chr1 207072728 207072779 -35591574 + (CA)n Simple_repeat Simple_repeat 2 52 0 9871 186 38 3 chr1 207073291 207075683 -35588670 - L1 LINE L1 -1701 5864 3390 320 0 25 0 chr1 207075683 207075723 -35588630 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 6052 83 16 28 chr1 207075723 207076737 -35587616 - SVA Other Other -517 1363 508 440 102 18 141 chr1 207077229 207077286 -35587067 + LTR41 LTR ERVL 649 711 -84 1976 116 24 20 chr1 207077286 207077579 -35586774 - AluSx SINE Alu -18 294 1 440 102 18 141 chr1 207077579 207077665 -35586688 + LTR41 LTR ERVL 711 794 -1 21 82 0 0 chr1 207077934 207077983 -35586370 + AT_rich Low_complexity Low_complexity 1 49 0 2389 81 7 0 chr1 207078378 207078676 -35585677 - AluSq SINE Alu -13 300 1 251 250 67 0 chr1 207078770 207078830 -35585523 - L2 LINE L2 -36 3236 3173 276 353 53 0 chr1 207079193 207079326 -35585027 + L2 LINE L2 3097 3236 -36 1619 166 72 36 chr1 207079600 207079979 -35584374 - Charlie1 DNA MER1_type -16 2745 2348 2346 65 7 10 chr1 207079979 207080272 -35584081 - AluY SINE Alu -19 292 1 1619 166 72 36 chr1 207080272 207080307 -35584046 - Charlie1 DNA MER1_type -413 2348 2316 370 298 76 18 chr1 207080674 207080899 -35583454 + L1ME1 LINE L1 11 248 -6611 864 235 66 27 chr1 207081464 207081899 -35582454 + L1ME1 LINE L1 1189 1632 -5227 * 891 132 6 36 chr1 207081898 207082065 -35582288 + L1MB7 LINE L1 5706 5867 -317 974 200 23 35 chr1 207082129 207082389 -35581964 + L1MB7 LINE L1 5628 5884 -300 710 213 16 60 chr1 207082386 207082513 -35581840 + L1ME1 LINE L1 5180 5292 -1665 * 2236 83 3 3 chr1 207082513 207082803 -35581550 + AluY SINE Alu 1 290 -21 710 213 16 60 chr1 207082803 207082924 -35581429 + L1ME1 LINE L1 5292 5417 -1540 245 135 0 0 chr1 207082934 207082971 -35581382 + tRNA-Phe-TTC tRNA tRNA 1 37 -39 1690 180 23 13 chr1 207082999 207083304 -35581049 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr1 207083304 207083325 -35581028 + AT_rich Low_complexity Low_complexity 1 21 0 1613 237 77 11 chr1 207083334 207083904 -35580449 + L1ME1 LINE L1 5426 6033 -924 2726 184 91 40 chr1 207084014 207084832 -35579521 + L1ME1 LINE L1 6017 6866 -111 2233 121 3 3 chr1 207084832 207085139 -35579214 + AluSx SINE Alu 1 307 -5 2726 184 91 40 chr1 207085139 207085207 -35579146 + L1ME1 LINE L1 6866 6929 -48 409 234 36 0 chr1 207085267 207085378 -35578975 + L1MC5 LINE L1 7802 7916 -45 277 234 10 33 chr1 207085542 207085643 -35578710 + MLT1L LTR MaLR 72 273 -273 327 241 44 51 chr1 207085691 207085828 -35578525 + MLT1J LTR MaLR 350 485 -26 23 0 0 0 chr1 207086549 207086572 -35577781 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr1 207086818 207086864 -35577489 + AT_rich Low_complexity Low_complexity 1 46 0 354 219 52 21 chr1 207087191 207087287 -35577066 + FAM SINE Alu 36 134 -41 1252 164 86 4 chr1 207087387 207087619 -35576734 - AluJo SINE Alu -61 251 1 365 288 129 7 chr1 207087623 207087762 -35576591 + MIR SINE MIR 29 184 -78 2248 96 0 0 chr1 207087762 207088085 -35576268 + AluSc SINE Alu 1 323 0 2082 126 3 0 chr1 207088199 207088500 -35575853 + AluSx SINE Alu 1 302 -10 2066 123 57 88 chr1 207088871 207089276 -35575077 - MSTB2 LTR MaLR 0 457 66 1747 164 26 23 chr1 207089276 207089586 -35574767 - AluJb SINE Alu -1 311 1 2066 123 57 88 chr1 207089586 207089634 -35574719 - MSTB2 LTR MaLR -391 66 18 1998 104 19 0 chr1 207090283 207090543 -35573810 - AluSg SINE Alu -45 265 1 13044 65 49 34 chr1 207091310 207092388 -35571965 - HERVK9 LTR ERVK -3980 1936 753 192 219 0 94 chr1 207092388 207092452 -35571901 - MER5B DNA MER1_type -61 117 60 13044 65 49 34 chr1 207092452 207093217 -35571136 - HERVK9 LTR ERVK -5163 753 1 3581 122 4 2 chr1 207093217 207093727 -35570626 - MER9 LTR ERVK 0 511 1 27 0 0 0 chr1 207093749 207093776 -35570577 + AT_rich Low_complexity Low_complexity 1 27 0 507 176 108 10 chr1 207094607 207094709 -35569644 - AluJb SINE Alu -13 299 188 2009 61 4 4 chr1 207095572 207095840 -35568513 - AluY SINE Alu 0 305 38 408 295 51 19 chr1 207095865 207096021 -35568332 + MIR SINE MIR 36 196 -66 23 0 0 0 chr1 207096464 207096487 -35567866 + AT_rich Low_complexity Low_complexity 1 23 0 30 45 0 0 chr1 207096692 207096736 -35567617 + AT_rich Low_complexity Low_complexity 1 44 0 2330 90 3 3 chr1 207096737 207097037 -35567316 - AluSx SINE Alu -12 300 1 286 221 35 58 chr1 207097789 207097875 -35566478 + MIR3 SINE MIR 101 184 -24 436 211 296 0 chr1 207098998 207099140 -35565213 + MER5A DNA MER1_type 6 189 0 1382 128 0 78 chr1 207099325 207099567 -35564786 + AluSx SINE Alu 51 273 -39 380 247 0 0 chr1 207099573 207099662 -35564691 + MER117 DNA MER1_type 6 94 -103 375 181 64 32 chr1 207100016 207100110 -35564243 + MIR3 SINE MIR 108 204 -4 242 301 103 15 chr1 207100683 207100819 -35563534 + L2 LINE L2 3160 3307 -6 244 321 19 0 chr1 207101164 207101272 -35563081 + MIR SINE MIR 57 165 -63 2346 105 0 0 chr1 207101351 207101656 -35562697 + AluSq SINE Alu 1 305 -8 239 286 95 24 chr1 207102177 207102261 -35562092 - L2 LINE L2 -35 3237 3148 351 343 140 4 chr1 207102617 207102853 -35561500 - L3 LINE CR1 -213 1364 1097 26 0 0 0 chr1 207103190 207103216 -35561137 + AT_rich Low_complexity Low_complexity 1 26 0 251 219 0 0 chr1 207103835 207103876 -35560477 - L2 LINE L2 -18 3254 3214 2244 112 0 16 chr1 207104045 207104359 -35559994 + AluSc SINE Alu 1 309 0 635 175 205 67 chr1 207104417 207104460 -35559893 - LTR54B LTR ERV1 -160 338 302 2093 114 0 0 chr1 207104460 207104765 -35559588 + AluSq SINE Alu 21 313 0 635 175 205 67 chr1 207104765 207105018 -35559335 - LTR54B LTR ERV1 -196 302 1 2142 208 38 36 chr1 207105024 207105231 -35559122 - MER31-int LTR ERV1 -398 7139 6934 2645 16 7 3 chr1 207105231 207105535 -35558818 - AluY SINE Alu -6 305 1 2142 208 38 36 chr1 207105535 207105831 -35558522 - MER31-int LTR ERV1 -603 6934 6635 1024 161 4 113 chr1 207105929 207106203 -35558150 - MER31-int LTR ERV1 -697 4174 3931 402 236 116 23 chr1 207106259 207106475 -35557878 - MER31-int LTR ERV1 -2970 1966 1731 315 206 0 52 chr1 207106501 207106598 -35557755 - MER31-int LTR ERV1 -3315 1808 1717 2356 103 0 0 chr1 207106810 207107110 -35557243 + AluSg SINE Alu 1 300 -10 1932 156 15 3 chr1 207107239 207107572 -35556781 + MER54A LTR ERVL 1 337 -564 765 93 115 22 chr1 207107572 207107711 -35556642 + AluSg/x SINE Alu 149 300 -12 1313 107 0 0 chr1 207107712 207107889 -35556464 + AluSg/x SINE Alu 131 307 -5 362 156 0 16 chr1 207107889 207107953 -35556400 - MLT1B LTR MaLR -94 296 234 1075 174 71 9 chr1 207107999 207108223 -35556130 - MLT1B LTR MaLR -152 238 1 3329 182 36 18 chr1 207108223 207109128 -35555225 - L1M4 LINE L1 -707 5965 5045 1212 148 0 0 chr1 207109197 207109373 -35554980 + AluSg/x SINE Alu 133 308 -4 865 198 0 42 chr1 207109373 207109590 -35554763 - L1M4 LINE L1 -1722 4922 4715 1324 168 0 0 chr1 207109591 207109794 -35554559 + AluJb SINE Alu 1 203 -109 1894 173 0 7 chr1 207109907 207110202 -35554151 + AluJb SINE Alu 1 293 -19 654 191 14 0 chr1 207110202 207110343 -35554010 - L1M4 LINE L1 -1924 4720 4578 1025 72 12 66 chr1 207110446 207110612 -35553741 - LTR14 LTR ERVK -386 162 6 3327 89 10 22 chr1 207110613 207111109 -35553244 - LTR14 LTR ERVK -58 490 1 967 124 0 21 chr1 207111138 207111283 -35553070 - FLAM_C SINE Alu 0 143 2 2449 235 50 43 chr1 207111283 207111904 -35552449 - L1M4 LINE L1 -5744 798 170 2340 103 0 3 chr1 207111904 207112215 -35552138 - AluSg SINE Alu 0 310 1 2449 235 50 43 chr1 207112215 207112358 -35551995 - L1M4 LINE L1 -6372 170 29 1798 230 46 71 chr1 207112364 207112835 -35551518 - L1M4 LINE L1 -2935 3211 2730 2270 110 3 0 chr1 207112835 207113135 -35551218 - AluSp SINE Alu -12 301 1 1798 230 46 71 chr1 207113135 207113348 -35551005 - L1M4 LINE L1 -3416 2730 2551 2007 155 3 0 chr1 207113348 207113644 -35550709 - AluSx SINE Alu -15 297 1 1798 230 46 71 chr1 207113644 207113835 -35550518 - L1M4 LINE L1 -3595 2551 2357 247 333 142 28 chr1 207114137 207114455 -35549898 - L2 LINE L2 -1139 2175 1822 395 365 86 60 chr1 207114555 207114762 -35549591 + L2 LINE L2 2962 3181 -91 2418 78 3 3 chr1 207114762 207115068 -35549285 - AluSq SINE Alu -7 306 1 395 365 86 60 chr1 207115068 207115161 -35549192 + L2 LINE L2 3181 3270 -2 1864 153 26 29 chr1 207115316 207115657 -35548696 - MER58B DNA MER1_type 0 341 2 315 0 0 0 chr1 207116575 207116610 -35547743 + (CA)n Simple_repeat Simple_repeat 2 36 0 247 217 87 0 chr1 207116681 207116750 -35547603 + L1ME4a LINE L1 5558 5632 -489 342 259 218 0 chr1 207116861 207117081 -35547272 + L1ME4a LINE L1 5770 6037 -84 24 32 0 0 chr1 207119624 207119655 -35544698 + AT_rich Low_complexity Low_complexity 1 31 0 1343 174 91 25 chr1 207121001 207121277 -35543076 + AluJo SINE Alu 1 294 -18 1990 119 0 10 chr1 207122423 207122716 -35541637 - AluSp SINE Alu -23 290 1 22 0 0 0 chr1 207122861 207122883 -35541470 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr1 207122883 207122910 -35541443 + (T)n Simple_repeat Simple_repeat 1 27 0 348 274 9 18 chr1 207123193 207123306 -35541047 - L1M4 LINE L1 -2292 5273 5162 430 170 62 36 chr1 207123319 207123431 -35540922 + Tigger1 DNA MER2_type 1 115 -2303 10313 189 92 14 chr1 207123433 207125978 -35538375 - L1PA15 LINE L1 0 7603 4670 2350 106 7 0 chr1 207125978 207126280 -35538073 - AluSq SINE Alu -9 304 1 10313 189 92 14 chr1 207126280 207127456 -35536897 - L1PA15 LINE L1 -2933 4670 3587 1096 234 31 0 chr1 207127459 207127750 -35536603 - L1PA15 LINE L1 -5019 2562 2263 1601 146 36 13 chr1 207127752 207128060 -35536293 + Tigger1 DNA MER2_type 2104 2418 0 353 286 106 12 chr1 207128217 207128738 -35535615 - L1M4 LINE L1 -2634 4931 4341 1518 239 29 57 chr1 207128770 207129281 -35535072 - MLT1D LTR MaLR -2 503 7 430 152 0 0 chr1 207129363 207129429 -35534924 - AluJ/FRAM SINE Alu -16 296 231 2374 167 42 16 chr1 207129531 207129671 -35534682 - L1M4 LINE L1 -3404 4161 4026 2007 151 0 16 chr1 207129671 207129988 -35534365 - AluSx SINE Alu 0 312 1 2374 167 42 16 chr1 207129988 207130052 -35534301 - L1M4 LINE L1 -3539 4026 3965 1641 199 26 0 chr1 207130052 207130354 -35533999 - AluJb SINE Alu -2 310 1 2374 167 42 16 chr1 207130354 207130949 -35533404 - L1M4 LINE L1 -3600 3965 3341 1667 162 0 23 chr1 207130949 207131251 -35533102 + MER1B DNA MER1_type 1 295 -44 750 123 28 0 chr1 207131248 207131354 -35532999 + MER1B DNA MER1_type 231 339 0 * 481 182 28 97 chr1 207131355 207131531 -35532822 + L1MD2 LINE L1 5920 6083 -276 352 245 0 21 chr1 207131611 207131705 -35532648 + L1MD2 LINE L1 6058 6149 -210 481 274 32 13 chr1 207131706 207131863 -35532490 + L1MD2 LINE L1 6198 6357 -2 5962 180 21 14 chr1 207131896 207132248 -35532105 - L1PB1 LINE L1 -5 6849 6501 234 0 0 0 chr1 207132248 207132274 -35532079 + (TG)n Simple_repeat Simple_repeat 2 27 0 5962 180 21 14 chr1 207132274 207133260 -35531093 - L1PB1 LINE L1 -353 6501 5523 2281 109 0 0 chr1 207133260 207133563 -35530790 - AluSp SINE Alu -10 303 1 5962 180 21 14 chr1 207133563 207133950 -35530403 - L1PB1 LINE L1 -1331 5523 5140 324 0 0 0 chr1 207133950 207133986 -35530367 + (TATG)n Simple_repeat Simple_repeat 2 37 0 5962 180 21 14 chr1 207133986 207135013 -35529340 - L1PB1 LINE L1 -1714 5140 2214 741 287 20 8 chr1 207135039 207135290 -35529063 + L1M4 LINE L1 3410 3663 -2483 7976 150 14 12 chr1 207135329 207136703 -35527650 + L1P LINE L1 3405 4781 -1365 195 129 0 0 chr1 207137444 207137475 -35526878 + (TA)n Simple_repeat Simple_repeat 2 32 0 1524 138 0 17 chr1 207137707 207137947 -35526406 - MER46A DNA MER2_type 0 236 1 207 302 32 16 chr1 207138160 207138223 -35526130 - L3b LINE CR1 -10 1573 1510 328 324 119 22 chr1 207138271 207138456 -35525897 - L2 LINE L2 0 3313 3111 238 261 72 54 chr1 207138448 207138559 -35525794 - L3 LINE CR1 -133 1444 1332 * 1916 114 11 4 chr1 207138738 207139010 -35525343 + AluSg SINE Alu 1 274 -36 1426 191 46 146 chr1 207139043 207139577 -35524776 + LTR49 LTR ERV1 13 476 -119 2102 120 7 0 chr1 207139577 207139878 -35524475 - AluSq SINE Alu -8 305 3 1426 191 46 146 chr1 207139878 207139975 -35524378 + LTR49 LTR ERV1 476 581 -14 633 227 78 7 chr1 207140225 207140379 -35523974 + L1MC1 LINE L1 6168 6332 -1 346 249 271 28 chr1 207140612 207140793 -35523560 - MIR SINE MIR -27 235 11 2094 137 0 6 chr1 207140947 207141261 -35523092 + AluSx SINE Alu 1 312 0 27 62 0 0 chr1 207141416 207141464 -35522889 + AT_rich Low_complexity Low_complexity 1 48 0 414 313 232 18 chr1 207141496 207141729 -35522624 - L1ME LINE L1 -298 5823 5523 1437 150 0 17 chr1 207141729 207141969 -35522384 - MER46A DNA MER2_type 0 236 1 414 313 232 18 chr1 207141969 207142007 -35522346 - L1ME LINE L1 -598 5523 5494 397 275 78 31 chr1 207142013 207142206 -35522147 - L1ME LINE L1 -702 5468 5267 289 252 118 7 chr1 207142274 207142409 -35521944 - L1ME4a LINE L1 -24 6097 5948 346 330 52 52 chr1 207142621 207142854 -35521499 + L2 LINE L2 3032 3264 -8 415 125 0 69 chr1 207143292 207143364 -35520989 - AluJ/FLAM SINE Alu -235 67 1 656 261 189 57 chr1 207143622 207143900 -35520453 + MLT1J LTR MaLR 11 356 -155 673 165 8 25 chr1 207143900 207144021 -35520332 + FLAM_A SINE Alu 4 122 -11 656 261 189 57 chr1 207144021 207144129 -35520224 + MLT1J LTR MaLR 356 448 -63 5525 120 11 6 chr1 207145017 207145843 -35518510 + L1PA16 LINE L1 5320 6149 -17 2969 215 94 14 chr1 207145881 207146771 -35517582 + L1ME2 LINE L1 5177 6154 -10 13642 119 50 52 chr1 207147380 207147842 -35516511 + Tigger1 DNA MER2_type 6 467 -1951 1503 161 3 86 chr1 207147842 207148146 -35516207 + AluJb SINE Alu 1 279 -33 13642 119 50 52 chr1 207148146 207148925 -35515428 + Tigger1 DNA MER2_type 467 1246 -1172 2159 99 14 0 chr1 207148925 207149209 -35515144 - AluSg SINE Alu -22 288 1 13642 119 50 52 chr1 207149209 207149602 -35514751 + Tigger1 DNA MER2_type 1246 1638 -780 1830 131 88 0 chr1 207149602 207149876 -35514477 - AluSx SINE Alu -14 298 1 13642 119 50 52 chr1 207149876 207150656 -35513697 + Tigger1 DNA MER2_type 1638 2417 -1 2777 189 30 51 chr1 207151050 207151673 -35512680 - MER90 LTR ERV1 -4 610 1 405 289 151 21 chr1 207151724 207152031 -35512322 + L1MC4 LINE L1 7487 7912 -83 25 31 0 0 chr1 207152206 207152238 -35512115 + AT_rich Low_complexity Low_complexity 1 32 0 30377 27 4 0 chr1 207152321 207156749 -35507604 - L1PA3 LINE L1 0 6155 1712 675 185 57 6 chr1 207156752 207156909 -35507444 - L1MC2 LINE L1 -1 6343 6179 678 169 28 28 chr1 207157269 207157447 -35506906 + MER104 DNA MER2_type 3 180 0 2111 130 7 0 chr1 207157498 207157797 -35506556 + AluSq SINE Alu 1 301 -12 1952 111 0 4 chr1 207158921 207159182 -35505171 + AluSq SINE Alu 1 260 -53 323 221 32 21 chr1 207159424 207159519 -35504834 + Charlie1 DNA MER1_type 2657 2752 -9 374 159 0 43 chr1 207159788 207159857 -35504496 - MER46A DNA MER2_type -84 152 87 * 425 121 45 0 chr1 207159812 207159878 -35504475 + MER46A DNA MER2_type 168 236 0 596 189 47 0 chr1 207160026 207160153 -35504200 + FLAM_A SINE Alu 1 133 0 919 281 163 17 chr1 207161758 207162224 -35502129 - HAL1 LINE L1 -1972 535 2 2126 129 0 0 chr1 207162570 207162864 -35501489 - AluSx SINE Alu -18 294 1 201 288 62 0 chr1 207164495 207164575 -35499778 - MIR SINE MIR -26 236 152 425 345 36 12 chr1 207164814 207164979 -35499374 - MIR SINE MIR -91 171 3 190 258 145 0 chr1 207165141 207165203 -35499150 - L2 LINE L2 -6 3266 3196 240 263 0 0 chr1 207165431 207165507 -35498846 + CT-rich Low_complexity Low_complexity 3 78 0 317 241 35 0 chr1 207165912 207165970 -35498383 - MER2 DNA MER2_type -285 60 1 649 295 29 0 chr1 207166078 207166322 -35498031 - L1M4 LINE L1 -2100 4046 3796 390 316 57 53 chr1 207167105 207167352 -35497001 - MLT1K LTR MaLR -120 468 221 646 255 43 1 chr1 207167693 207167885 -35496468 - L1ME3A LINE L1 0 6170 5959 561 200 43 0 chr1 207167925 207168040 -35496313 - FLAM_C SINE Alu -12 121 2 39 0 0 0 chr1 207168356 207168395 -35495958 + AT_rich Low_complexity Low_complexity 1 39 0 223 191 0 21 chr1 207169638 207169685 -35494668 + (TATG)n Simple_repeat Simple_repeat 3 48 0 353 278 38 45 chr1 207169702 207169835 -35494518 - MIR3 SINE MIR -45 163 32 2237 95 3 3 chr1 207169946 207170242 -35494111 - AluSp SINE Alu -17 296 1 2056 113 3 0 chr1 207171237 207171528 -35492825 - AluSx SINE Alu -12 300 9 2222 178 61 28 chr1 207172479 207172974 -35491379 - L1ME1 LINE L1 -8 6158 5648 1361 194 69 3 chr1 207172974 207173294 -35491059 - L1ME1 LINE L1 -1370 4776 4436 634 238 31 6 chr1 207173295 207173455 -35490898 - FRAM SINE Alu -3 173 10 903 240 43 13 chr1 207173565 207173798 -35490555 - MIR SINE MIR -21 241 2 263 339 214 18 chr1 207174134 207174353 -35490000 + L2 LINE L2 2907 3194 -78 2005 128 14 3 chr1 207174353 207174641 -35489712 - AluJb SINE Alu -21 291 1 263 339 214 18 chr1 207174641 207174701 -35489652 + L2 LINE L2 3194 3241 -31 725 248 96 4 chr1 207174748 207174998 -35489355 - L1MC3 LINE L1 -1626 6159 5887 3742 228 40 48 chr1 207175002 207175153 -35489200 - L1MC3 LINE L1 -816 5330 5179 1972 142 0 13 chr1 207175153 207175455 -35488898 - AluJb SINE Alu -1 311 14 3742 228 40 48 chr1 207175455 207175469 -35488884 - L1MC3 LINE L1 -967 5179 5166 1003 171 24 0 chr1 207175469 207175639 -35488714 - FAM SINE Alu 0 175 2 3742 228 40 48 chr1 207175639 207176511 -35487842 - L1MC3 LINE L1 -980 5166 4303 665 23 12 0 chr1 207176511 207176597 -35487756 - L1PA4 LINE L1 -3 6152 6066 3742 228 40 48 chr1 207176597 207176894 -35487459 - L1MC3 LINE L1 -1843 4303 4005 23 0 0 0 chr1 207176906 207176929 -35487424 + AT_rich Low_complexity Low_complexity 1 23 0 2034 97 3 47 chr1 207176929 207177080 -35487273 - AluSx SINE Alu -26 286 153 2172 100 3 3 chr1 207177080 207177371 -35486982 - AluSc SINE Alu -18 291 1 2034 97 3 47 chr1 207177371 207177518 -35486835 - AluSx SINE Alu -159 153 1 1433 196 40 59 chr1 207178269 207178641 -35485712 - MLT1A1 LTR MaLR 0 365 1 282 285 41 32 chr1 207178647 207178770 -35485583 - Tigger8 DNA MER2_type -19 647 524 1045 144 133 5 chr1 207179517 207179712 -35484641 + MER46B DNA MER2_type 1 95 -141 24 32 0 0 chr1 207180569 207180600 -35483753 + AT_rich Low_complexity Low_complexity 1 31 0 315 267 70 0 chr1 207180615 207180701 -35483652 - MER103 DNA DNA -19 147 56 2078 142 0 0 chr1 207180974 207181284 -35483069 - AluSx SINE Alu -2 310 1 2207 114 0 0 chr1 207181296 207181595 -35482758 - AluSq SINE Alu -14 299 1 2399 71 10 0 chr1 207181604 207181901 -35482452 - AluY SINE Alu -11 300 1 2346 97 0 0 chr1 207181901 207182201 -35482152 - AluSg SINE Alu -10 300 1 218 114 114 23 chr1 207182668 207182712 -35481641 + L2 LINE L2 3262 3309 -4 459 289 58 43 chr1 207182806 207183014 -35481339 + MIR SINE MIR 2 212 -50 1772 156 33 3 chr1 207183473 207183773 -35480580 - LOR1b LTR ERV1 0 461 153 543 162 0 10 chr1 207183773 207183872 -35480481 + MER4A LTR ERV1 1 98 -566 1772 143 0 23 chr1 207183930 207184230 -35480123 + MER4A LTR ERV1 372 664 0 600 199 96 7 chr1 207184233 207184379 -35479974 - LOR1b LTR ERV1 -302 159 1 264 197 180 0 chr1 207184614 207184675 -35479678 + L2 LINE L2 3147 3218 -54 2389 97 0 3 chr1 207185130 207185440 -35478913 + AluSc SINE Alu 1 309 0 683 152 16 180 chr1 207185596 207185665 -35478688 - MER3 DNA MER1_type 0 209 130 1616 161 26 4 chr1 207185665 207185791 -35478562 + AluJo SINE Alu 10 132 -180 393 75 0 0 chr1 207185791 207185844 -35478509 + (TG)n Simple_repeat Simple_repeat 1 53 0 1616 161 26 4 chr1 207185844 207185984 -35478369 + AluJo SINE Alu 132 282 -30 683 152 16 180 chr1 207185984 207186164 -35478189 - MER3 DNA MER1_type -79 130 1 225 280 80 30 chr1 207186339 207186439 -35477914 - MIR SINE MIR -70 192 88 482 44 15 0 chr1 207186620 207186688 -35477665 - MER41B LTR ERV1 -86 549 481 2342 86 3 0 chr1 207187217 207187507 -35476846 - AluSq SINE Alu -22 291 1 1353 110 0 0 chr1 207188468 207188641 -35475712 + AluSg/x SINE Alu 125 297 -15 2086 108 0 0 chr1 207189735 207190039 -35474314 - AluSx SINE Alu 0 319 16 23 54 0 0 chr1 207190835 207190872 -35473481 + AT_rich Low_complexity Low_complexity 1 37 0 2460 68 13 0 chr1 207190922 207191229 -35473124 - AluY SINE Alu 0 311 1 27 29 0 0 chr1 207191430 207191464 -35472889 + AT_rich Low_complexity Low_complexity 1 34 0 192 332 90 57 chr1 207191533 207191744 -35472609 + L2 LINE L2 2211 2428 -886 337 318 54 95 chr1 207191915 207192230 -35472123 + L2 LINE L2 2965 3266 -6 2160 118 0 3 chr1 207192951 207193248 -35471105 - AluSx SINE Alu -16 296 1 207 69 0 0 chr1 207193550 207193579 -35470774 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 27 62 0 0 chr1 207193902 207193950 -35470403 + AT_rich Low_complexity Low_complexity 1 48 0 412 181 144 19 chr1 207194267 207194427 -35469926 + LTR50 LTR ERVL 611 790 -5 2225 118 0 0 chr1 207194491 207194778 -35469575 - AluSx SINE Alu -23 289 3 458 289 114 23 chr1 207195106 207195449 -35468904 - L1ME4a LINE L1 -179 5942 5569 1866 168 3 0 chr1 207195509 207195795 -35468558 - AluJb SINE Alu -24 288 2 238 231 60 34 chr1 207195935 207195982 -35468371 - HAL1 LINE L1 -142 2365 2321 2440 99 0 3 chr1 207195982 207196296 -35468057 - AluSq SINE Alu 0 313 1 238 231 60 34 chr1 207196296 207196365 -35467988 - HAL1 LINE L1 -186 2321 2246 318 285 0 58 chr1 207196460 207196597 -35467756 - HAL1b LINE L1 -474 874 746 1716 161 29 0 chr1 207196663 207196943 -35467410 - AluJb SINE Alu -24 288 1 1846 209 37 80 chr1 207197154 207197228 -35467125 + MLT1F LTR MaLR 1 77 -465 1751 176 113 25 chr1 207197228 207197625 -35466728 - MSTB1 LTR MaLR 0 432 1 1846 209 37 80 chr1 207197625 207198114 -35466239 + MLT1F LTR MaLR 77 540 -2 413 106 15 0 chr1 207198217 207198283 -35466070 + Alu SINE Alu 1 67 -243 353 261 31 8 chr1 207198400 207198530 -35465823 + MLT1F-int LTR MaLR 1237 1369 -2 846 232 11 88 chr1 207198532 207198804 -35465549 + MLT1F LTR MaLR 1 251 -291 392 186 18 53 chr1 207198813 207198926 -35465427 - L1MC4 LINE L1 -17 8025 7917 329 198 12 0 chr1 207198929 207199010 -35465343 + CT-rich Low_complexity Low_complexity 1 82 0 1018 163 5 33 chr1 207199076 207199260 -35465093 - AluJb SINE Alu -5 307 129 1590 230 69 105 chr1 207199263 207199797 -35464556 - L1MC4 LINE L1 -150 7892 7419 1793 191 96 21 chr1 207199797 207200267 -35464086 - MLT1D LTR MaLR 0 505 1 1590 230 69 105 chr1 207200267 207200876 -35463477 - L1MC4 LINE L1 -623 7419 6790 371 216 198 30 chr1 207200882 207201049 -35463304 + LTR41 LTR ERVL 1 195 -578 288 257 137 62 chr1 207201249 207201475 -35462878 + LTR41 LTR ERVL 521 763 -10 269 305 92 24 chr1 207201485 207201649 -35462704 - L1MC4 LINE L1 -1254 6788 6614 387 233 67 28 chr1 207202256 207202436 -35461917 + LTR41 LTR ERVL 1 187 -586 273 156 0 0 chr1 207202700 207202745 -35461608 - Alu SINE Alu -255 45 1 2259 114 0 0 chr1 207202858 207203165 -35461188 + AluSx SINE Alu 1 307 -5 644 242 25 0 chr1 207203500 207203620 -35460733 + L2 LINE L2 3150 3272 0 23 0 0 0 chr1 207203626 207203649 -35460704 + AT_rich Low_complexity Low_complexity 1 23 0 187 294 188 0 chr1 207203845 207203930 -35460423 + L3 LINE CR1 1175 1275 -302 291 299 137 0 chr1 207203932 207204049 -35460304 + MER94 DNA DNA 1 133 -1 518 354 47 20 chr1 207204064 207204318 -35460035 + L3 LINE CR1 1282 1542 -35 507 232 16 0 chr1 207204665 207204790 -35459563 + L1MD3 LINE L1 7810 7936 -59 3166 161 94 13 chr1 207205390 207205935 -35458418 + L1MDa LINE L1 1824 2450 -4090 2090 149 3 0 chr1 207205935 207206230 -35458123 + AluSx SINE Alu 1 296 -16 3166 161 94 13 chr1 207206230 207206449 -35457904 + L1MDa LINE L1 2450 2650 -3890 315 109 10 83 chr1 207206459 207206651 -35457702 + (TA)n Simple_repeat Simple_repeat 2 179 0 3747 247 83 9 chr1 207206680 207208111 -35456242 + L1MDa LINE L1 2652 4188 -2352 23 68 0 0 chr1 207208111 207208155 -35456198 + AT_rich Low_complexity Low_complexity 1 44 0 3010 228 74 43 chr1 207208157 207209089 -35455264 - L1 LINE L1 -2923 3405 2504 2094 112 3 20 chr1 207209089 207209392 -35454961 + AluSx SINE Alu 1 298 -14 3010 228 74 43 chr1 207209392 207210638 -35453715 - L1 LINE L1 -3824 2504 1060 1404 200 26 4 chr1 207210638 207210903 -35453450 - AluJo SINE Alu -18 294 24 4068 185 62 47 chr1 207210936 207210961 -35453392 - L1 LINE L1 -4257 1071 1048 2022 152 13 3 chr1 207210961 207211270 -35453083 - AluSx SINE Alu 0 312 1 4068 185 62 47 chr1 207211270 207212129 -35452224 - L1 LINE L1 -4280 1048 167 188 35 35 0 chr1 207212129 207212158 -35452195 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4068 185 62 47 chr1 207212158 207212296 -35452057 - L1 LINE L1 -5161 167 33 1139 249 96 26 chr1 207212295 207212869 -35451484 + L1MDa LINE L1 4716 5329 -1211 * 2275 125 0 0 chr1 207212891 207213194 -35451159 + AluSx SINE Alu 1 303 -9 2370 128 25 5 chr1 207213236 207213641 -35450712 - L1MA2 LINE L1 0 6304 5892 701 196 15 74 chr1 207213912 207214182 -35450171 - SVA Other Other -520 866 613 5438 69 35 57 chr1 207214231 207215116 -35449237 - SVA Other Other -520 866 1 216 200 0 0 chr1 207215139 207215184 -35449169 + G-rich Low_complexity Low_complexity 53 97 0 3171 108 42 9 chr1 207215185 207215734 -35448619 - L1M1 LINE L1 -4169 3396 2830 * 9193 201 30 16 chr1 207215733 207217690 -35446663 - L1MEc LINE L1 -5567 1998 15 1511 269 99 26 chr1 207217688 207218613 -35445740 + L1MEc LINE L1 2006 2998 -4748 * 2244 253 79 19 chr1 207218641 207219044 -35445309 - L1M4 LINE L1 -2877 3269 2892 2217 84 24 10 chr1 207219044 207219342 -35445011 - AluY SINE Alu -9 302 1 2244 253 79 19 chr1 207219342 207220001 -35444352 - L1M4 LINE L1 -3254 2892 2143 2855 64 5 8 chr1 207222468 207222841 -35441512 + L1PA6 LINE L1 5778 6149 -5 187 339 15 0 chr1 207222872 207222937 -35441416 - L2 LINE L2 0 3272 3207 2097 148 0 0 chr1 207223158 207223456 -35440897 - AluSx SINE Alu -14 298 1 1697 157 18 25 chr1 207224138 207224418 -35439935 - AluJo SINE Alu -34 278 1 206 303 99 14 chr1 207225876 207225992 -35438361 + MIR SINE MIR 7 133 -75 1324 169 23 60 chr1 207226382 207226683 -35437670 - AluJo SINE Alu -8 304 15 475 318 0 5 chr1 207327532 207327727 -35336626 + AluYa5 SINE Alu 118 311 0 298 355 36 0 chr1 207327768 207327906 -35336447 + L1MEc LINE L1 4100 4242 -3323 1136 174 16 61 chr1 207328691 207328938 -35335415 + MER106A DNA MER1_type 1 236 0 1397 214 9 58 chr1 207329178 207329364 -35334989 + LTR40c LTR ERVL 122 287 -178 2480 203 52 68 chr1 207329364 207329995 -35334358 - MLT1E3 LTR MaLR -3 621 1 1397 214 9 58 chr1 207329995 207330135 -35334218 + LTR40c LTR ERVL 287 432 -33 1174 117 21 54 chr1 207330164 207330403 -35333950 + Charlie5 DNA MER1_type 2355 2585 -27 492 248 29 7 chr1 207330840 207330977 -35333376 + MIR3 SINE MIR 37 176 -32 2533 152 12 10 chr1 207331076 207331478 -35332875 - MER57A LTR ERV1 0 403 1 192 179 0 0 chr1 207332019 207332058 -35332295 + (TG)n Simple_repeat Simple_repeat 2 40 0 1243 294 101 29 chr1 207332397 207333020 -35331333 - MER115 DNA AcHobo -25 668 1 245 277 114 60 chr1 207333472 207333638 -35330715 - L3 LINE CR1 -140 1437 1263 618 158 105 30 chr1 207334521 207334654 -35329699 + FRAM SINE Alu 1 40 0 5898 135 9 26 chr1 207335546 207337102 -35327251 + L1PA15 LINE L1 4622 6165 0 6122 139 42 18 chr1 207337455 207338553 -35325800 + L1MC1 LINE L1 5198 6318 -15 429 293 40 71 chr1 207338739 207339091 -35325262 + MLT1I LTR MaLR 68 408 -1 298 233 82 14 chr1 207340303 207340376 -35323977 - MIR SINE MIR -102 160 83 387 169 0 0 chr1 207340464 207340535 -35323818 + A-rich Low_complexity Low_complexity 1 71 0 2327 104 0 0 chr1 207341414 207341721 -35322632 - AluSc SINE Alu -2 307 1 239 282 51 0 chr1 207341874 207341952 -35322401 - L1ME LINE L1 -286 5884 5803 273 169 135 11 chr1 207341959 207342048 -35322305 - HSMAR1 DNA Mariner -1187 100 1 544 286 23 46 chr1 207342054 207342169 -35322184 - L1ME LINE L1 -410 5754 5638 2251 186 66 7 chr1 207342169 207342577 -35321776 - MSTB1 LTR MaLR 0 432 1 544 286 23 46 chr1 207342577 207342745 -35321608 - L1ME LINE L1 -526 5638 5482 1285 182 146 0 chr1 207342896 207343176 -35321177 + L1MC3 LINE L1 7257 7577 -208 1135 179 10 0 chr1 207343238 207343439 -35320914 + L1MC2 LINE L1 6137 6339 -5 465 286 25 0 chr1 207343822 207343941 -35320412 + L2 LINE L2 3192 3313 0 1785 169 109 49 chr1 207344384 207344667 -35319686 + MLT1C LTR MaLR 4 323 -144 2061 118 0 16 chr1 207344667 207345018 -35319335 - AluSq SINE Alu 0 313 1 1785 169 109 49 chr1 207345018 207345166 -35319187 + MLT1C LTR MaLR 323 461 -6 296 211 11 53 chr1 207345970 207346065 -35318288 + CT-rich Low_complexity Low_complexity 5 95 0 232 341 8 30 chr1 207346375 207346507 -35317846 + L3b LINE CR1 1370 1498 -85 350 333 43 0 chr1 207347798 207347936 -35316417 + MER117 DNA MER1_type 6 149 -48 2147 127 5 67 chr1 207348550 207348937 -35315416 + Tigger1 DNA MER2_type 1 363 -2055 3254 132 4 4 chr1 207348943 207349450 -35314903 + Tigger1 DNA MER2_type 1580 2086 -332 1642 175 0 25 chr1 207349451 207349736 -35314617 + AluJb SINE Alu 1 278 -34 189 0 0 0 chr1 207349738 207349759 -35314594 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 812 204 50 77 chr1 207349770 207349990 -35314363 + AluJo SINE Alu 87 300 -12 2172 144 9 3 chr1 207349990 207350323 -35314030 + Tigger1 DNA MER2_type 2084 2418 0 300 237 76 51 chr1 207351078 207351196 -35313157 + MIR SINE MIR 80 200 -62 364 259 173 51 chr1 207352525 207352722 -35311631 - MIR SINE MIR -14 248 28 1648 204 30 21 chr1 207352742 207353081 -35311272 + LTR32 LTR ERVL 8 349 -122 899 130 19 13 chr1 207353182 207353336 -35311017 + LTR32 LTR ERVL 317 471 0 342 307 53 9 chr1 207353537 207353651 -35310702 - L2 LINE L2 -1 3312 3194 262 302 85 47 chr1 207353677 207353806 -35310547 + L2 LINE L2 3160 3293 -20 497 233 123 61 chr1 207354075 207354489 -35309864 + MLT1L LTR MaLR 9 501 -114 225 298 125 29 chr1 207355289 207355393 -35308960 + L2 LINE L2 3181 3294 -19 203 310 70 14 chr1 207355469 207355540 -35308813 + MIR3 SINE MIR 14 88 -120 609 238 147 22 chr1 207355553 207355784 -35308569 + MIR SINE MIR 2 261 -1 790 249 28 6 chr1 207355866 207356047 -35308306 - MER117 DNA MER1_type -9 188 4 219 323 77 19 chr1 207357087 207357242 -35307111 + L2 LINE L2 2815 2978 -335 560 267 43 33 chr1 207358524 207358725 -35305628 + MIR SINE MIR 38 241 -21 865 78 13 13 chr1 207359926 207360085 -35304268 + L1PA4 LINE L1 6006 6133 0 322 303 101 9 chr1 207360374 207360483 -35303870 + MIR SINE MIR 31 149 -113 322 340 47 43 chr1 207360861 207361096 -35303257 + L2 LINE L2 3044 3279 -34 213 39 0 0 chr1 207361118 207361144 -35303209 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 221 232 61 40 chr1 207361371 207361470 -35302883 - MIR3 SINE MIR -8 200 100 2454 143 49 33 chr1 207361595 207361619 -35302734 + Tigger2a DNA MER2_type 1 23 -2685 2977 78 13 5 chr1 207361619 207361991 -35302362 + THE1C LTR MaLR 1 375 0 2454 143 49 33 chr1 207361991 207362393 -35301960 + Tigger2a DNA MER2_type 23 434 0 436 263 113 0 chr1 207363345 207363478 -35300875 - MIR SINE MIR -79 183 36 3435 261 145 26 chr1 207363537 207365006 -35299347 + L2 LINE L2 1057 2699 -615 569 231 54 0 chr1 207365055 207365185 -35299168 - MIR SINE MIR -52 210 74 387 311 140 21 chr1 207365336 207365529 -35298824 - MIR SINE MIR -33 229 14 315 274 69 0 chr1 207366490 207366592 -35297761 - MIR SINE MIR -2 260 152 15924 132 34 5 chr1 207366592 207368941 -35295412 + Tigger1 DNA MER2_type 2 2418 0 271 262 84 19 chr1 207368941 207369048 -35295305 + L1MC4a LINE L1 5798 5911 -1897 271 288 27 0 chr1 207369474 207369547 -35294806 + GA-rich Low_complexity Low_complexity 3 77 0 2485 104 30 35 chr1 207369596 207369962 -35294391 + THE1B LTR MaLR 1 364 0 220 250 59 15 chr1 207370113 207370181 -35294172 + MIR SINE MIR 79 149 -113 1209 229 93 50 chr1 207371474 207371914 -35292439 - MLT1C LTR MaLR -4 463 5 26695 35 2 0 chr1 207372047 207375867 -35288486 + L1PA4 LINE L1 2326 6150 -5 2048 171 118 36 chr1 207376683 207377150 -35287203 - MLT1D LTR MaLR 0 505 1 661 299 204 7 chr1 207378082 207378574 -35285779 - L2 LINE L2 0 3313 2722 636 188 55 8 chr1 207380896 207381024 -35283329 - MER94 DNA DNA 0 134 1 222 37 0 0 chr1 207381543 207381570 -35282783 + (CA)n Simple_repeat Simple_repeat 2 28 0 185 326 32 11 chr1 207382644 207382739 -35281614 + L2 LINE L2 2553 2649 -665 348 261 9 35 chr1 207384331 207384446 -35279907 + MIR SINE MIR 1 112 -150 181 209 0 47 chr1 207384492 207384535 -35279818 - L2 LINE L2 -15 3298 3258 * 1025 207 48 10 chr1 207384501 207384709 -35279644 - MIR SINE MIR -16 246 31 1084 244 114 32 chr1 207385268 207385637 -35278716 + HAL1 LINE L1 1409 1807 -700 480 306 95 21 chr1 207385988 207386377 -35277976 - L1ME4a LINE L1 -246 5875 5458 22 0 0 0 chr1 207387199 207387221 -35277132 + AT_rich Low_complexity Low_complexity 1 22 0 294 231 28 19 chr1 207387227 207387335 -35277018 - L1ME4a LINE L1 -11 6110 6002 284 209 90 30 chr1 207387437 207387571 -35276782 - L1ME4a LINE L1 -246 5875 5734 313 268 68 94 chr1 207387887 207388122 -35276231 + MLT1J LTR MaLR 110 338 -173 1432 136 27 0 chr1 207388339 207388560 -35275793 - AluSg/x SINE Alu -1 311 85 311 177 240 0 chr1 207389102 207389198 -35275155 - L1 LINE L1 -1666 4480 4362 5571 125 93 12 chr1 207389339 207390403 -35273950 + Tigger3b DNA MER2_type 1 1150 -81 1900 125 6 47 chr1 207390405 207390748 -35273605 + MER1B DNA MER1_type 8 336 -3 371 189 14 14 chr1 207390751 207390825 -35273528 + Tigger3b DNA MER2_type 1150 1223 -9 2392 104 0 0 chr1 207391021 207391328 -35273025 + AluSx SINE Alu 1 307 -5 2246 92 0 0 chr1 207391347 207391658 -35272695 + AluY SINE Alu 1 311 0 501 309 95 40 chr1 207392134 207392662 -35271691 - L1MDa LINE L1 -2742 3798 3242 640 211 119 41 chr1 207393120 207393314 -35271039 + MER63A DNA MER1_type 2 210 0 2206 139 0 0 chr1 207393322 207393625 -35270728 - AluSx SINE Alu -9 303 1 359 276 175 27 chr1 207393640 207394025 -35270328 - L1MDa LINE L1 -3904 2636 2347 716 192 115 98 chr1 207394348 207394480 -35269873 + MIR SINE MIR 3 142 -120 2397 87 3 0 chr1 207394480 207394778 -35269575 + AluSx SINE Alu 1 299 -13 716 192 115 98 chr1 207394778 207394879 -35269474 + MIR SINE MIR 142 240 -22 289 288 78 53 chr1 207394960 207395485 -35268868 - HAL1b LINE L1 -742 606 69 576 170 245 0 chr1 207396033 207396180 -35268173 - MER5A DNA MER1_type -5 184 2 1870 180 16 100 chr1 207397986 207398436 -35265917 - LTR32 LTR ERVL -44 427 16 234 0 0 0 chr1 207398530 207398556 -35265797 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1742 186 0 0 chr1 207398560 207398835 -35265518 - AluSx SINE Alu -37 275 1 510 367 93 26 chr1 207400192 207400620 -35263733 + L2 LINE L2 2811 3267 -5 597 255 117 17 chr1 207402251 207402482 -35261871 - MIR SINE MIR 0 262 9 541 284 15 107 chr1 207402507 207402695 -35261658 - L2 LINE L2 -529 2785 2638 1796 168 25 0 chr1 207402695 207402980 -35261373 - AluJb SINE Alu -20 292 1 541 284 15 107 chr1 207402980 207403118 -35261235 - L2 LINE L2 -676 2638 2489 244 260 110 10 chr1 207403281 207403381 -35260972 + L2 LINE L2 3161 3270 -2 26 0 0 0 chr1 207403672 207403698 -35260655 + AT_rich Low_complexity Low_complexity 1 26 0 234 281 20 133 chr1 207404268 207404464 -35259889 + L2 LINE L2 2992 3165 -107 224 372 29 36 chr1 207404490 207404627 -35259726 - L2 LINE L2 -3 3269 3134 1357 228 14 39 chr1 207404725 207404935 -35259418 + LTR16C LTR ERVL 146 345 -146 1886 176 0 10 chr1 207404935 207405241 -35259112 + AluJo SINE Alu 1 303 -9 1357 228 14 39 chr1 207405241 207405385 -35258968 + LTR16C LTR ERVL 345 491 0 1243 221 125 48 chr1 207405453 207405909 -35258444 + MLT1F1 LTR MaLR 69 559 -8 226 194 129 0 chr1 207406429 207406491 -35257862 + L1ME LINE L1 3380 3449 -2697 * 785 221 163 8 chr1 207406480 207406738 -35257615 + L1ME LINE L1 5510 5807 -359 1732 100 23 4 chr1 207406745 207407004 -35257349 + THE1C LTR MaLR 1 264 -111 2189 85 0 0 chr1 207407288 207407560 -35256793 + AluSc SINE Alu 35 306 -3 2424 147 20 0 chr1 207407886 207408288 -35256065 - MSTA LTR MaLR 0 428 19 21 0 0 0 chr1 207408302 207408323 -35256030 + AT_rich Low_complexity Low_complexity 1 21 0 314 302 90 68 chr1 207408349 207408660 -35255693 + L1ME LINE L1 2173 2490 -3656 409 284 82 38 chr1 207408883 207409334 -35255019 + L1ME LINE L1 3547 4017 -2129 226 279 13 0 chr1 207409428 207409507 -35254846 - L1M4 LINE L1 -2098 4048 3969 645 244 61 70 chr1 207409584 207410173 -35254180 + L1ME LINE L1 4253 4836 -1310 443 321 74 15 chr1 207410500 207410998 -35253355 + L1ME LINE L1 5255 5799 -528 29 28 0 0 chr1 207411134 207411170 -35253183 + AT_rich Low_complexity Low_complexity 1 36 0 5141 165 55 9 chr1 207411305 207412371 -35251982 + L1MC1 LINE L1 5206 6316 -17 573 321 96 29 chr1 207412511 207412959 -35251394 + L1 LINE L1 2341 2818 -3328 197 238 0 0 chr1 207414610 207414652 -35249701 - MIR SINE MIR -63 145 104 1657 213 94 103 chr1 207418750 207419176 -35245177 + L1MC5 LINE L1 6692 7120 -841 1769 185 0 16 chr1 207419176 207419489 -35244864 + AluJo SINE Alu 1 308 -4 1657 213 94 103 chr1 207419489 207420046 -35244307 + L1MC5 LINE L1 7120 7667 -294 1270 146 60 34 chr1 207420097 207420330 -35244023 - AluJo SINE Alu -37 275 37 278 164 9 112 chr1 207420334 207420450 -35243903 + L1MC5 LINE L1 7653 7756 -205 250 271 66 42 chr1 207420465 207420631 -35243722 + MER96 DNA MER1_type? 5 174 -1 248 154 0 77 chr1 207420632 207420710 -35243643 + L1MC5 LINE L1 7749 7820 -141 658 317 158 9 chr1 207420882 207421324 -35243029 - L2 LINE L2 -1 3312 2805 406 322 46 23 chr1 207424238 207424412 -35239941 - MIR3 SINE MIR -8 200 23 334 301 124 0 chr1 207424571 207424724 -35239629 + L1ME LINE L1 5475 5646 -524 1100 292 30 36 chr1 207424803 207425241 -35239112 - LTR16A LTR ERVL 0 450 16 714 269 186 20 chr1 207425304 207425798 -35238555 + L1 LINE L1 2890 3465 -2681 504 276 98 18 chr1 207425804 207426141 -35238212 + L1 LINE L1 3545 3908 -2238 267 235 15 15 chr1 207426212 207426280 -35238073 + L2 LINE L2 2784 2851 -463 341 306 27 34 chr1 207426282 207426429 -35237924 + L1ME LINE L1 272 417 -5653 768 147 8 0 chr1 207426577 207426706 -35237647 + L1MD1 LINE L1 6113 6242 0 227 160 11 234 chr1 207426746 207426840 -35237513 - MIR SINE MIR -171 91 19 8120 80 27 0 chr1 207427192 207429096 -35235257 - L1PA7 LINE L1 -3 6151 4208 15879 94 15 6 chr1 207429097 207431529 -35232824 + L1PA7 LINE L1 1736 4190 -1956 3873 117 5 2 chr1 207431529 207432098 -35232255 + L1PA16 LINE L1 5581 6155 -11 204 246 70 18 chr1 207432916 207432973 -35231380 - L3 LINE CR1 -6 1571 1512 26 50 0 0 chr1 207433780 207433820 -35230533 + AT_rich Low_complexity Low_complexity 1 40 0 546 349 100 19 chr1 207434351 207434869 -35229484 + L2 LINE L2 2069 2628 -686 23 0 0 0 chr1 207435543 207435566 -35228787 + AT_rich Low_complexity Low_complexity 1 23 0 804 141 45 58 chr1 207435910 207436066 -35228287 - Tigger2 DNA MER2_type -1 2717 2564 * 1136 115 23 73 chr1 207436063 207436281 -35228072 - Tigger2 DNA MER2_type -2510 208 2 222 340 30 10 chr1 207436283 207436383 -35227970 + MIR SINE MIR 47 148 -60 604 327 45 65 chr1 207436454 207436900 -35227453 + L2 LINE L2 2836 3272 0 2200 89 7 0 chr1 207439109 207439391 -35224962 - AluSx SINE Alu -12 300 17 539 247 29 41 chr1 207439892 207440062 -35224291 - MIR SINE MIR 0 262 95 1924 146 67 29 chr1 207440439 207440815 -35223538 + MLT1B LTR MaLR 1 390 0 183 80 0 0 chr1 207441307 207441332 -35223021 + (T)n Simple_repeat Simple_repeat 1 25 0 237 274 12 12 chr1 207441669 207441753 -35222600 - MER5A DNA MER1_type -8 181 98 551 233 74 63 chr1 207441770 207441846 -35222507 - MER5C DNA MER1_type -3 321 247 1763 138 43 26 chr1 207441846 207442151 -35222202 - AluJo SINE Alu -1 311 2 551 233 74 63 chr1 207442151 207442344 -35222009 - MER5C DNA MER1_type -77 247 49 827 180 224 51 chr1 207442460 207442717 -35221636 + MER33 DNA MER1_type 1 299 -2286 1731 155 10 55 chr1 207442717 207443027 -35221326 + AluJo SINE Alu 1 296 -16 827 180 224 51 chr1 207443027 207443059 -35221294 + MER33 DNA MER1_type 299 324 0 1699 168 68 6 chr1 207443414 207443736 -35220617 + MLT2C1 LTR ERVL 1 342 -55 2766 169 70 16 chr1 207444712 207445268 -35219085 + L1MB7 LINE L1 5599 6184 0 1342 105 73 0 chr1 207445328 207445519 -35218834 - AluSp SINE Alu -2 311 107 2038 140 71 40 chr1 207445744 207446159 -35218194 + MLT1C LTR MaLR 1 452 -15 1700 149 64 11 chr1 207446186 207446467 -35217886 - AluJo SINE Alu -16 296 1 467 174 73 28 chr1 207446678 207446787 -35217566 + MER91B DNA MER1_type 17 130 -60 260 326 23 0 chr1 207446807 207446893 -35217460 + MER91B DNA MER1_type 93 180 -10 499 281 7 27 chr1 207447528 207447674 -35216679 - MIR SINE MIR -119 143 1 387 264 31 75 chr1 207447724 207447883 -35216470 - L2 LINE L2 -1 3312 3161 1168 191 33 36 chr1 207448115 207448418 -35215935 - L1MA7 LINE L1 -10 6281 5980 1768 181 19 0 chr1 207448419 207448739 -35215614 + L1MA7 LINE L1 5660 5985 -306 227 314 59 39 chr1 207448998 207449151 -35215202 + MER5B DNA MER1_type 7 162 -16 290 320 20 20 chr1 207449172 207449322 -35215031 + MIR SINE MIR 112 261 -1 189 246 18 18 chr1 207449374 207449431 -35214922 + L2 LINE L2 2995 3051 -221 204 40 0 0 chr1 207449482 207449507 -35214846 + (T)n Simple_repeat Simple_repeat 1 25 0 309 159 0 0 chr1 207450217 207450280 -35214073 + CT-rich Low_complexity Low_complexity 1 63 0 430 248 113 0 chr1 207450447 207450580 -35213773 + LTR16A LTR ERVL 282 429 -21 2610 59 0 3 chr1 207451007 207451312 -35213041 + AluY SINE Alu 1 304 -7 418 291 63 33 chr1 207451701 207452137 -35212216 + L1ME3A LINE L1 1318 1940 -5198 * 2478 275 56 29 chr1 207452108 207453623 -35210730 + L1ME3A LINE L1 3672 5497 -1460 21 0 0 0 chr1 207453705 207453726 -35210627 + AT_rich Low_complexity Low_complexity 1 21 0 591 270 13 0 chr1 207453732 207453884 -35210469 + MER3 DNA MER1_type 1 154 -55 5036 244 55 36 chr1 207453902 207455345 -35209008 + L1ME1 LINE L1 751 2238 -4900 1877 158 0 0 chr1 207455345 207455654 -35208699 + AluSx SINE Alu 1 309 0 5036 244 55 36 chr1 207455654 207455978 -35208375 + L1ME1 LINE L1 2238 2554 -4584 1440 209 94 12 chr1 207456008 207456629 -35207724 + L1ME1 LINE L1 5820 6472 -505 2236 207 16 39 chr1 207456642 207457154 -35207199 + MLT1D LTR MaLR 6 505 0 1675 194 41 70 chr1 207457154 207457638 -35206715 + L1ME1 LINE L1 6504 6973 -4 250 240 0 0 chr1 207457648 207457698 -35206655 + MER3 DNA MER1_type 160 209 0 1982 249 109 47 chr1 207457698 207458414 -35205939 + L1ME3A LINE L1 5847 6654 -327 333 47 0 0 chr1 207458414 207458457 -35205896 + (CA)n Simple_repeat Simple_repeat 2 44 0 1982 249 109 47 chr1 207458457 207458803 -35205550 + L1ME3A LINE L1 6654 6977 -4 237 349 16 8 chr1 207459897 207460026 -35204327 + MIR3 SINE MIR 45 174 -34 200 268 72 0 chr1 207460338 207460435 -35203918 + L3b LINE CR1 1309 1412 -171 1827 164 20 10 chr1 207460653 207460952 -35203401 + AluJb SINE Alu 1 302 -10 803 190 6 3 chr1 207461433 207461737 -35202616 + GA-rich Low_complexity Low_complexity 1 304 0 218 103 51 0 chr1 207462396 207462435 -35201918 + MIR SINE MIR 81 121 -141 204 238 16 0 chr1 207467435 207467498 -35196855 + (TTCA)n Simple_repeat Simple_repeat 1 64 0 3087 119 97 4 chr1 207467572 207468086 -35196267 + L1MB3 LINE L1 5620 6181 -2 217 329 98 44 chr1 207468357 207468582 -35195771 - MIR SINE MIR -20 242 6 1591 186 118 59 chr1 207468645 207468688 -35195665 + MLT1C LTR MaLR 1 40 -427 2022 105 48 10 chr1 207468688 207468983 -35195370 + AluSq SINE Alu 1 306 -7 1591 186 118 59 chr1 207468983 207469380 -35194973 + MLT1C LTR MaLR 40 467 0 601 232 140 10 chr1 207470497 207470718 -35193635 + MIR SINE MIR 3 250 -12 203 253 29 165 chr1 207471812 207471982 -35192371 - MIR SINE MIR -32 230 84 1631 203 62 49 chr1 207475381 207475834 -35188519 - MLT1C LTR MaLR -3 464 6 2217 215 50 15 chr1 207476248 207476768 -35187585 + MLT1F LTR MaLR 1 538 -4 1022 175 30 0 chr1 207476768 207476968 -35187385 + L1MA4 LINE L1 6090 6295 -5 189 100 0 0 chr1 207477012 207477042 -35187311 - L2 LINE L2 0 3272 3243 181 287 177 34 chr1 207479449 207479919 -35184434 + L2 LINE L2 1143 1679 -1635 1646 168 39 7 chr1 207479934 207480220 -35184133 - AluJo SINE Alu -17 295 1 365 22 0 0 chr1 207480809 207480854 -35183499 - MADE1 DNA Mariner 0 80 36 195 129 0 0 chr1 207480954 207480985 -35183368 + (TG)n Simple_repeat Simple_repeat 2 32 0 349 269 0 10 chr1 207481596 207481700 -35182653 + MER103 DNA DNA 10 112 -54 273 247 111 0 chr1 207482480 207482561 -35181792 - MLT1K LTR MaLR -64 524 435 213 239 15 0 chr1 207483056 207483123 -35181230 + (TA)n Simple_repeat Simple_repeat 2 69 0 223 199 176 42 chr1 207483913 207484008 -35180345 - MIR SINE MIR -95 113 30 311 231 128 90 chr1 207484226 207484306 -35180047 - Charlie8 DNA MER1_type -2255 162 87 3638 153 45 31 chr1 207484306 207485013 -35179340 + L1MB2 LINE L1 5453 6169 -2 311 231 128 90 chr1 207485013 207485088 -35179265 - Charlie8 DNA MER1_type -2330 87 1 354 313 0 35 chr1 207485189 207485304 -35179049 + MIR SINE MIR 35 145 -63 235 280 0 0 chr1 207485565 207485615 -35178738 - L2 LINE L2 -21 3251 3202 422 18 18 0 chr1 207485671 207485726 -35178627 + (TAAAA)n Simple_repeat Simple_repeat 3 58 0 249 224 141 35 chr1 207487571 207487656 -35176697 - MLT1J LTR MaLR -81 430 337 364 264 40 34 chr1 207487721 207487869 -35176484 - MLT1J LTR MaLR -362 149 1 1632 324 45 10 chr1 207488608 207489305 -35175048 + L3 LINE CR1 852 1572 -5 1228 178 11 0 chr1 207489312 207489503 -35174850 + MER58A DNA MER1_type 32 224 0 1107 196 28 5 chr1 207489992 207490206 -35174147 + MER58A DNA MER1_type 6 224 0 2114 131 0 13 chr1 207490979 207491291 -35173062 - AluSx SINE Alu -4 308 1 1308 194 5 0 chr1 207491718 207491940 -35172413 + MER58A DNA MER1_type 2 224 0 250 258 30 30 chr1 207492018 207492084 -35172269 + MLT1J2 LTR MaLR 77 142 -308 1393 33 6 6 chr1 207492148 207492328 -35172025 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 276 77 0 0 chr1 207492330 207492369 -35171984 + (CAAG)n Simple_repeat Simple_repeat 2 40 0 420 288 108 42 chr1 207492408 207492693 -35171660 + MLT1L LTR MaLR 231 611 -3 1923 205 27 10 chr1 207492909 207493314 -35171039 - MLT2D LTR ERVL 0 414 3 618 215 153 29 chr1 207493389 207493598 -35170755 + MIR SINE MIR 6 240 -22 29423 62 26 1 chr1 207494281 207498028 -35166325 + L1P LINE L1 11 3850 -2296 182 197 15 91 chr1 207498800 207498866 -35165487 - MER5A DNA MER1_type -99 90 30 2285 105 3 3 chr1 207499285 207499590 -35164763 - AluSq SINE Alu -8 305 1 187 259 19 19 chr1 207499620 207499674 -35164679 + L3b LINE CR1 1530 1583 0 358 228 33 0 chr1 207499819 207499911 -35164442 + L2 LINE L2 3183 3277 -36 945 245 58 4 chr1 207499916 207500157 -35164196 - MIR SINE MIR -7 255 2 2303 107 3 0 chr1 207500730 207501028 -35163325 - AluSx SINE Alu -13 299 1 2822 129 22 2 chr1 207501055 207501465 -35162888 + MSTC LTR MaLR 2 419 -9 333 272 73 29 chr1 207501695 207501831 -35162522 - MIR SINE MIR -15 247 106 673 248 84 14 chr1 207502438 207502652 -35161701 + MIR SINE MIR 11 239 -23 384 206 82 100 chr1 207502718 207502888 -35161465 - L2 LINE L2 0 3313 3147 365 143 36 0 chr1 207503148 207503204 -35161149 - AluJ/FLAM SINE Alu -244 58 1 23 0 0 0 chr1 207503622 207503645 -35160708 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr1 207503969 207503994 -35160359 + (A)n Simple_repeat Simple_repeat 1 25 0 372 281 23 8 chr1 207504748 207504876 -35159477 + L1ME4a LINE L1 5597 5726 -395 21 82 0 0 chr1 207504889 207504938 -35159415 + AT_rich Low_complexity Low_complexity 1 49 0 574 181 151 20 chr1 207505110 207505309 -35159044 + L1ME4a LINE L1 5897 6121 0 23 0 0 0 chr1 207506811 207506834 -35157519 + AT_rich Low_complexity Low_complexity 1 23 0 263 222 16 16 chr1 207507037 207507100 -35157253 - L2 LINE L2 0 3272 3210 357 323 57 10 chr1 207507251 207507443 -35156910 - MLT1L LTR MaLR -2 613 413 381 278 30 15 chr1 207507486 207507619 -35156734 - MLT1L LTR MaLR -321 294 160 304 303 68 15 chr1 207507723 207507855 -35156498 + MER5A DNA MER1_type 43 181 -8 240 236 214 0 chr1 207507934 207508023 -35156330 + L2 LINE L2 2845 2952 -361 329 209 88 0 chr1 207508023 207508114 -35156239 + MLT1D LTR MaLR 1 99 -406 1832 176 3 3 chr1 207508240 207508542 -35155811 - AluJo SINE Alu -10 302 1 311 241 128 53 chr1 207509357 207509544 -35154809 - HAL1 LINE L1 -62 2445 2245 25 31 0 0 chr1 207509672 207509704 -35154649 + AT_rich Low_complexity Low_complexity 1 32 0 812 160 77 50 chr1 207509784 207510016 -35154337 + L1MD3 LINE L1 7595 7995 0 372 312 26 42 chr1 207510435 207510675 -35153678 + L1ME LINE L1 1290 1492 -4931 337 181 343 9 chr1 207510698 207510803 -35153550 + L1ME3A LINE L1 6021 6160 -10 557 268 14 67 chr1 207510986 207511133 -35153220 - L2 LINE L2 0 3313 3179 2214 110 0 7 chr1 207511133 207511424 -35152929 + AluSx SINE Alu 5 293 -19 557 268 14 67 chr1 207511424 207511485 -35152868 - L2 LINE L2 -134 3179 3116 651 312 68 24 chr1 207511686 207512100 -35152253 - HAL1 LINE L1 -590 1917 1486 23 33 0 0 chr1 207512131 207512161 -35152192 + AT_rich Low_complexity Low_complexity 1 30 0 2690 90 3 0 chr1 207512164 207512519 -35151834 - L1PB1 LINE L1 -4 6147 5792 465 19 0 0 chr1 207512519 207512573 -35151780 + (TA)n Simple_repeat Simple_repeat 1 54 0 232 288 64 41 chr1 207512613 207512908 -35151445 - HAL1 LINE L1 -1221 1286 985 1068 171 18 0 chr1 207512935 207513099 -35151254 - AluJo SINE Alu -145 167 1 309 248 39 62 chr1 207513996 207514125 -35150228 - MIR SINE MIR -20 242 117 * 803 265 4 62 chr1 207514114 207514371 -35149982 + MIR SINE MIR 21 262 0 280 294 49 42 chr1 207514890 207515033 -35149320 - MIR SINE MIR -83 179 36 2167 91 39 7 chr1 207515785 207516071 -35148282 + AluSg SINE Alu 1 295 -15 275 274 9 47 chr1 207516238 207516344 -35148009 + MIR SINE MIR 106 207 -55 470 241 26 9 chr1 207516447 207516563 -35147790 - MLT1H LTR MaLR -16 533 416 2187 111 0 7 chr1 207516666 207516985 -35147368 - AluSq SINE Alu 0 317 1 545 248 39 0 chr1 207517068 207517197 -35147156 + FLAM_A SINE Alu 1 134 -8 609 168 96 16 chr1 207517200 207517325 -35147028 - MLT1H LTR MaLR -335 214 80 226 282 14 0 chr1 207517938 207518009 -35146344 + (CA)n Simple_repeat Simple_repeat 1 72 0 439 234 22 110 chr1 207518026 207518253 -35146100 + L2 LINE L2 3107 3313 0 204 368 40 0 chr1 207518576 207518652 -35145701 - MIR SINE MIR -92 116 38 247 195 0 0 chr1 207519073 207519114 -35145239 - MER91B DNA MER1_type -119 71 31 509 262 31 20 chr1 207519166 207519345 -35145008 + MIR SINE MIR 15 189 -63 256 313 45 9 chr1 207519630 207519742 -35144611 + MIR3 SINE MIR 45 160 -48 1539 213 96 74 chr1 207520193 207520681 -35143672 + MLT1J LTR MaLR 13 511 0 271 260 41 0 chr1 207520846 207520919 -35143434 + MIR SINE MIR 108 183 -79 264 287 7 14 chr1 207521067 207521210 -35143143 + (TAGA)n Simple_repeat Simple_repeat 4 145 0 1460 246 68 3 chr1 207521231 207521601 -35142752 + MER69 DNA AcHobo 1 394 -2132 232 186 0 0 chr1 207521632 207521675 -35142678 + MER69 DNA AcHobo 2024 2066 -460 589 237 64 12 chr1 207521688 207521861 -35142492 + MIR SINE MIR 81 262 0 2087 88 0 75 chr1 207521987 207522321 -35142032 + AluSx SINE Alu 3 313 0 193 246 0 16 chr1 207522881 207522942 -35141411 - L2 LINE L2 -769 2545 2486 423 0 0 0 chr1 207527425 207527472 -35136881 + (TA)n Simple_repeat Simple_repeat 2 48 0 406 267 62 82 chr1 207527776 207528166 -35136187 - L2 LINE L2 -11 3302 2921 264 122 0 0 chr1 207528362 207528403 -35135950 + (CA)n Simple_repeat Simple_repeat 2 42 0 419 18 0 35 chr1 207528711 207528768 -35135585 + (TTTC)n Simple_repeat Simple_repeat 1 55 0 240 185 0 0 chr1 207528922 207528976 -35135377 + A-rich Low_complexity Low_complexity 1 54 0 192 158 0 0 chr1 207529761 207529799 -35134554 + T-rich Low_complexity Low_complexity 1 38 0 225 0 0 0 chr1 207531371 207531396 -35132957 + (A)n Simple_repeat Simple_repeat 1 25 0 591 153 0 85 chr1 207531430 207531548 -35132805 - MLT1B LTR MaLR 0 390 283 211 336 62 18 chr1 207531844 207531957 -35132396 + L2 LINE L2 3154 3271 -1 1871 119 42 16 chr1 207531990 207532300 -35132053 + L1MC1 LINE L1 6016 6333 0 186 220 0 20 chr1 207532365 207532415 -35131938 + MIR3 SINE MIR 152 200 -8 1254 258 65 38 chr1 207532561 207532639 -35131714 + L2 LINE L2 2558 2632 -681 2001 187 53 90 chr1 207532639 207532926 -35131427 + MLT1D LTR MaLR 1 262 -243 1989 115 19 50 chr1 207532926 207533249 -35131104 + AluSq SINE Alu 1 313 0 2001 187 53 90 chr1 207533249 207533485 -35130868 + MLT1D LTR MaLR 262 505 0 1254 258 65 38 chr1 207533485 207533683 -35130670 + L2 LINE L2 2632 2823 -490 2030 124 50 0 chr1 207533683 207533966 -35130387 - AluSx SINE Alu -15 297 1 1254 258 65 38 chr1 207533966 207534427 -35129926 + L2 LINE L2 2823 3312 -1 305 227 0 0 chr1 207534543 207534609 -35129744 - MIR SINE MIR -15 247 182 200 248 84 112 chr1 207535947 207536042 -35128311 + L2 LINE L2 3032 3128 -185 2298 97 0 23 chr1 207536042 207536351 -35128002 - AluSx SINE Alu -10 302 1 200 248 84 112 chr1 207536351 207536499 -35127854 + L2 LINE L2 3128 3268 -45 2066 108 108 21 chr1 207536499 207536834 -35127519 + THE1B LTR MaLR 1 364 0 200 248 84 112 chr1 207536834 207536875 -35127478 + L2 LINE L2 3268 3309 -4 434 273 31 37 chr1 207537266 207537427 -35126926 - MER91A DNA MER1_type -8 188 29 875 203 43 90 chr1 207537739 207537995 -35126358 + MLT1A2 LTR MaLR 1 244 -130 1012 277 69 22 chr1 207538249 207538641 -35125712 + L2 LINE L2 2669 3111 -202 306 0 0 0 chr1 207538641 207538675 -35125678 + (CA)n Simple_repeat Simple_repeat 2 35 0 1012 277 69 22 chr1 207538675 207538879 -35125474 + L2 LINE L2 3111 3304 -9 2086 140 40 6 chr1 207539010 207539360 -35124993 - THE1C LTR MaLR 0 375 14 586 241 40 40 chr1 207539529 207539728 -35124625 - MIR SINE MIR -51 211 13 22 56 0 0 chr1 207540574 207540610 -35123743 + AT_rich Low_complexity Low_complexity 1 36 0 359 269 94 13 chr1 207540724 207540873 -35123480 + MER103 DNA DNA 5 165 -1 1751 186 63 51 chr1 207541013 207541397 -35122956 + MLT1C LTR MaLR 8 349 -79 2108 94 40 3 chr1 207541397 207541694 -35122659 - AluY SINE Alu -3 308 1 1751 186 63 51 chr1 207541694 207541775 -35122578 + MLT1C LTR MaLR 349 428 0 2115 130 13 0 chr1 207543183 207543483 -35120870 + AluSx SINE Alu 1 304 -8 2569 53 0 22 chr1 207543939 207544257 -35120096 + AluY SINE Alu 1 311 0 1283 250 140 19 chr1 207544635 207545392 -35118961 - L2 LINE L2 0 3313 2466 2273 111 0 0 chr1 207545393 207545690 -35118663 + AluSq SINE Alu 2 298 -15 314 308 62 15 chr1 207545768 207545898 -35118455 + MIR3 SINE MIR 58 193 -15 2354 74 0 20 chr1 207546043 207546367 -35117986 - AluSg SINE Alu 0 310 1 2268 125 0 6 chr1 207547034 207547347 -35117006 - AluSx SINE Alu -1 311 1 2286 65 41 3 chr1 207548026 207548316 -35116037 + AluY SINE Alu 1 301 -10 535 205 0 57 chr1 207548619 207548741 -35115612 - MER117 DNA MER1_type -81 116 2 415 304 152 31 chr1 207549047 207549402 -35114951 + MLT1I LTR MaLR 4 401 -8 2106 105 14 0 chr1 207549994 207550280 -35114073 + AluSx SINE Alu 1 290 -22 804 225 98 72 chr1 207550325 207550537 -35113816 + L1ME4a LINE L1 5691 5896 -225 2148 100 7 20 chr1 207550537 207550837 -35113516 + AluSp SINE Alu 2 297 -16 804 225 98 72 chr1 207550837 207551041 -35113312 + L1ME4a LINE L1 5896 6118 -3 2807 13 0 3 chr1 207551147 207551453 -35112900 - AluYa5 SINE Alu -6 305 1 33 0 0 0 chr1 207551554 207551587 -35112766 + AT_rich Low_complexity Low_complexity 1 33 0 224 202 242 30 chr1 207552324 207552423 -35111930 - MER5A DNA MER1_type -1 188 69 822 188 0 0 chr1 207552864 207552997 -35111356 - FLAM_C SINE Alu 0 133 1 226 255 0 0 chr1 207552997 207553044 -35111309 + L3 LINE CR1 1524 1570 -7 214 225 0 0 chr1 207553261 207553301 -35111052 + MER5A DNA MER1_type 67 106 -83 22 0 0 0 chr1 207553311 207553333 -35111020 + AT_rich Low_complexity Low_complexity 1 22 0 2065 122 0 11 chr1 207553341 207553684 -35110669 + AluSx SINE Alu 1 340 0 1062 127 0 0 chr1 207553684 207553826 -35110527 - FRAM SINE Alu -36 140 1 197 206 0 0 chr1 207553827 207553861 -35110492 - MER5A DNA MER1_type -114 75 42 291 256 61 0 chr1 207553887 207553969 -35110384 + L2 LINE L2 3184 3270 -2 473 238 62 57 chr1 207554128 207554321 -35110032 + HAL1 LINE L1 38 231 -2276 880 270 165 29 chr1 207554425 207554903 -35109450 + HAL1 LINE L1 382 924 -1583 381 257 191 7 chr1 207554905 207555041 -35109312 + MLT1G LTR MaLR 1 161 -434 691 224 45 11 chr1 207555062 207555241 -35109112 + Charlie5 DNA MER1_type 16 200 -2412 2466 75 0 3 chr1 207555272 207555580 -35108773 + AluY SINE Alu 1 307 -4 1092 162 91 36 chr1 207555580 207555805 -35108548 + Charlie5 DNA MER1_type 2358 2600 -24 2426 92 0 7 chr1 207555805 207556109 -35108244 - AluSx SINE Alu -10 302 1 1092 162 91 36 chr1 207556109 207556136 -35108217 + Charlie5 DNA MER1_type 2600 2624 0 664 236 166 49 chr1 207556136 207556533 -35107820 + MLT1G LTR MaLR 111 555 0 374 265 68 14 chr1 207556589 207556925 -35107428 + HAL1 LINE L1 977 1358 -1149 391 221 97 21 chr1 207557040 207557185 -35107168 + HAL1 LINE L1 1546 1701 -806 241 229 0 0 chr1 207557221 207557269 -35107084 + HAL1 LINE L1 1795 1842 -665 1234 201 86 43 chr1 207557461 207557740 -35106613 + AluJb SINE Alu 1 291 -21 252 270 48 0 chr1 207559208 207559271 -35105082 + MER89-int LTR ERV1 412 477 -4459 206 346 0 0 chr1 207559521 207559599 -35104754 + CT-rich Low_complexity Low_complexity 3 80 0 316 277 107 47 chr1 207560117 207560370 -35103983 + MER89-int LTR ERV1 5075 5342 -1459 704 139 0 0 chr1 207561690 207561791 -35102562 - FRAM SINE Alu -14 162 62 185 0 40 0 chr1 207563078 207563103 -35101250 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1916 52 0 0 chr1 207563117 207563350 -35101003 - L1PA3 LINE L1 -3 6152 5920 1663 26 0 0 chr1 207563350 207563544 -35100809 + L1P LINE L1 4873 5066 -1080 206 32 32 0 chr1 207564749 207564780 -35099573 + (CAA)n Simple_repeat Simple_repeat 2 33 0 996 83 0 0 chr1 207565218 207565351 -35099002 - AluY SINE Alu -1 310 178 2288 78 4 0 chr1 207565353 207565634 -35098719 - AluSx SINE Alu -30 282 1 225 0 0 0 chr1 207566116 207566141 -35098212 + (T)n Simple_repeat Simple_repeat 1 25 0 549 225 95 47 chr1 207567873 207568042 -35096311 + MER91B DNA MER1_type 14 190 0 369 0 0 0 chr1 207568114 207568155 -35096198 + (CA)n Simple_repeat Simple_repeat 2 42 0 2494 239 92 23 chr1 207568339 207569248 -35095105 - L1MC5 LINE L1 -433 7528 6556 1477 228 47 6 chr1 207569376 207569696 -35094657 - MLT1A1 LTR MaLR -32 333 1 467 278 69 34 chr1 207569926 207569986 -35094367 - HAL1b LINE L1 -703 645 589 1602 188 52 33 chr1 207569986 207570353 -35094000 + MLT1A2 LTR MaLR 1 374 0 467 278 69 34 chr1 207570353 207570583 -35093770 - HAL1b LINE L1 -759 589 345 1642 186 24 0 chr1 207570863 207571153 -35093200 - AluSx SINE Alu -15 297 1 251 331 67 1 chr1 207572358 207572458 -35091895 + MIR SINE MIR 36 141 -67 218 247 45 67 chr1 207572546 207572635 -35091718 + L2 LINE L2 3163 3249 -23 802 211 23 12 chr1 207575402 207575573 -35088780 - MER5A DNA MER1_type 0 189 17 401 152 25 0 chr1 207575597 207575676 -35088677 - L1MC4 LINE L1 -1 8041 7961 238 262 37 28 chr1 207576139 207576246 -35088107 + L2 LINE L2 2596 2703 -611 610 183 0 0 chr1 207577169 207577273 -35087080 - AluJb SINE Alu -16 296 193 1460 213 70 0 chr1 207577939 207578226 -35086127 - MLT2C1 LTR ERVL -90 307 1 517 256 8 0 chr1 207578606 207578727 -35085626 - L2 LINE L2 -4 3309 3188 279 133 0 0 chr1 207579342 207579387 -35084966 + (TG)n Simple_repeat Simple_repeat 2 46 0 217 185 154 31 chr1 207579652 207579717 -35084636 + MIR SINE MIR 81 153 -109 186 43 0 0 chr1 207580920 207580943 -35083410 + (CTG)n Simple_repeat Simple_repeat 1 23 0 223 250 0 0 chr1 207582083 207582131 -35082222 + GA-rich Low_complexity Low_complexity 1 48 0 983 225 70 67 chr1 207582223 207582668 -35081685 + LTR16A1 LTR ERVL 12 457 0 571 226 46 36 chr1 207583017 207583212 -35081141 - LTR33 LTR ERVL -21 500 304 296 267 273 0 chr1 207583259 207583409 -35080944 - LTR33 LTR ERVL -327 194 4 32 0 0 0 chr1 207583419 207583451 -35080902 + AT_rich Low_complexity Low_complexity 1 32 0 1940 72 0 53 chr1 207583456 207583720 -35080633 - AluY SINE Alu -21 290 41 247 366 0 0 chr1 207583919 207584001 -35080352 - L2 LINE L2 -36 3236 3155 1614 168 67 7 chr1 207584523 207584808 -35079545 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr1 207584813 207584834 -35079519 + AT_rich Low_complexity Low_complexity 1 21 0 356 317 52 22 chr1 207585184 207585414 -35078939 + MIR SINE MIR 13 249 -13 2406 100 0 0 chr1 207585586 207585896 -35078457 + AluSx SINE Alu 1 310 -2 524 214 26 0 chr1 207585943 207586060 -35078293 + MIR SINE MIR 30 149 -59 28 0 0 0 chr1 207586453 207586481 -35077872 + AT_rich Low_complexity Low_complexity 1 28 0 402 300 94 41 chr1 207587203 207587470 -35076883 + L2 LINE L2 2991 3271 -1 2169 99 0 45 chr1 207588246 207588560 -35075793 + AluSx SINE Alu 1 300 -12 360 43 0 0 chr1 207588959 207589005 -35075348 + (TG)n Simple_repeat Simple_repeat 2 47 0 204 299 103 26 chr1 207589745 207589862 -35074491 + L2 LINE L2 3145 3270 -2 193 337 79 11 chr1 207590134 207590223 -35074130 - L2 LINE L2 -37 3235 3141 303 320 95 26 chr1 207590241 207590472 -35073881 - MIR SINE MIR 0 262 16 613 184 32 24 chr1 207590901 207591026 -35073327 - MER63 DNA MER1_type -310 752 1 406 192 0 26 chr1 207592185 207592263 -35072090 + MER63 DNA MER1_type 677 752 -310 303 208 104 13 chr1 207592263 207592340 -35072013 + MER63 DNA MER1_type 978 1061 0 311 265 202 33 chr1 207592517 207592943 -35071410 + L2 LINE L2 1437 1934 -1380 505 264 165 25 chr1 207594803 207595037 -35069316 - MIR SINE MIR -10 252 1 256 321 12 12 chr1 207598768 207598852 -35065501 + MIR3 SINE MIR 113 196 -12 302 271 19 47 chr1 207599465 207599572 -35064781 + L2 LINE L2 3138 3241 -31 626 229 64 55 chr1 207600103 207600209 -35064144 - MIR SINE MIR -28 234 130 2360 124 63 12 chr1 207600209 207600620 -35063733 - MSTB1 LTR MaLR 0 432 1 626 229 64 55 chr1 207600620 207600721 -35063632 - MIR SINE MIR -132 130 21 1086 184 5 0 chr1 207601122 207601307 -35063046 + MIR SINE MIR 2 187 -75 672 292 15 10 chr1 207601614 207601816 -35062537 + MIR SINE MIR 2 204 -58 21 26 0 26 chr1 207602285 207602304 -35062049 + AT_rich Low_complexity Low_complexity 1 19 -19 2267 86 0 0 chr1 207602304 207602594 -35061759 - AluY SINE Alu -21 290 1 21 26 0 26 chr1 207602594 207602613 -35061740 + AT_rich Low_complexity Low_complexity 19 38 0 1378 188 35 113 chr1 207602643 207603042 -35061311 - MLT1B LTR MaLR -22 368 1 783 188 19 68 chr1 207605877 207606084 -35058269 - L1MA9 LINE L1 -1 6311 6115 5403 101 8 4 chr1 207606085 207606838 -35057515 - L1PA12 LINE L1 0 6168 5413 2858 145 29 0 chr1 207606947 207607401 -35056952 - MLT1C LTR MaLR 0 467 1 363 300 40 0 chr1 207607429 207607529 -35056824 - MIR SINE MIR -86 176 73 23 0 0 0 chr1 207607951 207607974 -35056379 + AT_rich Low_complexity Low_complexity 1 23 0 511 234 81 39 chr1 207608166 207608346 -35056007 - MIR SINE MIR -3 259 75 365 256 133 0 chr1 207610183 207610386 -35053967 + L1ME4a LINE L1 5724 5953 -168 423 0 0 0 chr1 207610457 207610504 -35053849 + (CA)n Simple_repeat Simple_repeat 2 48 0 313 127 18 18 chr1 207610542 207610597 -35053756 + MLT1K LTR MaLR 188 242 -346 337 194 16 0 chr1 207610915 207610977 -35053376 + MLT1K LTR MaLR 524 586 -2 333 201 0 153 chr1 207611154 207611298 -35053055 + L1MCa LINE L1 1946 2067 -4359 632 171 16 0 chr1 207611298 207611427 -35052926 + (TATG)n Simple_repeat Simple_repeat 1 131 0 311 230 54 0 chr1 207611429 207611503 -35052850 + L1MCa LINE L1 1996 2073 -4353 621 144 0 0 chr1 207611503 207611607 -35052746 + (TG)n Simple_repeat Simple_repeat 1 104 0 2072 69 72 0 chr1 207612074 207612364 -35051989 - AluY SINE Alu 0 311 1 1336 229 7 0 chr1 207612380 207612660 -35051693 - AluJo SINE Alu -30 282 1 706 286 89 18 chr1 207612667 207613174 -35051179 - L1MDb LINE L1 -3489 2917 2375 341 281 83 66 chr1 207613485 207613713 -35050640 - L1MDb LINE L1 -3905 2501 2270 510 294 64 76 chr1 207614127 207614549 -35049804 - HAL1b LINE L1 -703 645 229 2543 20 26 0 chr1 207614573 207614876 -35049477 + AluYa5 SINE Alu 1 311 0 2215 115 6 10 chr1 207664977 207665290 -34999063 + AluSx SINE Alu 1 312 0 3743 148 36 0 chr1 207665298 207665906 -34998447 + L1P LINE L1 3602 4231 -1915 5124 188 35 3 chr1 207667603 207668567 -34995786 - THE1C-int LTR MaLR -656 995 1 1766 174 58 25 chr1 207668567 207668930 -34995423 - THE1C LTR MaLR 0 375 1 349 229 71 132 chr1 207668946 207669239 -34995114 - L1MDb LINE L1 -5378 1029 776 380 332 124 22 chr1 207669421 207669776 -34994577 + L1MC4a LINE L1 5442 5832 -1976 2841 90 0 0 chr1 207669814 207670181 -34994172 + L1P LINE L1 4 370 -5776 2602 60 9 0 chr1 207670178 207670513 -34993840 + L1P LINE L1 734 1071 -5075 * 1619 225 8 3 chr1 207670614 207670970 -34993383 - L1MD2 LINE L1 -368 5991 5634 689 102 0 0 chr1 207670979 207671067 -34993286 + L1P LINE L1 11 98 -6048 * 10187 100 1 22 chr1 207671065 207672573 -34991780 + L1P LINE L1 847 2321 -3825 7515 123 16 34 chr1 207672675 207673856 -34990497 + Tigger1 DNA MER2_type 1258 2417 -1 272 169 34 17 chr1 207674591 207674650 -34989703 + L1ME LINE L1 5582 5641 -480 265 224 84 19 chr1 207674853 207674960 -34989393 + MIR SINE MIR 119 232 -30 461 277 66 50 chr1 207675207 207675525 -34988828 - L1MC4a LINE L1 -1925 5883 5561 20571 54 6 17 chr1 207675625 207678714 -34985639 + L1P2 LINE L1 2734 5783 -371 182 91 30 0 chr1 207679305 207679338 -34985015 + GA-rich Low_complexity Low_complexity 1 34 0 1868 159 14 7 chr1 207679363 207679659 -34984694 + AluJo SINE Alu 1 298 -14 372 310 9 0 chr1 207679914 207680027 -34984326 - MER81 DNA DNA 0 114 1 196 259 35 17 chr1 207680199 207680257 -34984096 - L2 LINE L2 -3 3269 3211 559 273 120 13 chr1 207680653 207680953 -34983400 - L1ME4a LINE L1 -99 6022 5691 475 195 43 97 chr1 207682095 207682280 -34982073 - MIR SINE MIR -76 186 12 1297 247 65 36 chr1 207682345 207682873 -34981480 + MLT1K LTR MaLR 12 588 0 2085 135 3 0 chr1 207683233 207683530 -34980823 + AluSx SINE Alu 1 298 -14 245 218 0 77 chr1 207683620 207683698 -34980655 + MIR SINE MIR 186 257 -5 28 0 0 0 chr1 207683703 207683731 -34980622 + AT_rich Low_complexity Low_complexity 1 28 0 329 325 108 24 chr1 207684442 207684544 -34979809 - MIR SINE MIR -13 249 157 4206 148 22 0 chr1 207684544 207685165 -34979188 - MER41B LTR ERV1 0 635 1 329 325 108 24 chr1 207685165 207685274 -34979079 - MIR SINE MIR -105 157 20 183 268 0 54 chr1 207685527 207685583 -34978770 - L2 LINE L2 -82 3231 3179 306 100 0 0 chr1 207687296 207687336 -34977017 + MER41A LTR ERV1 325 364 -190 204 318 80 11 chr1 207687494 207687563 -34976790 + MIR3 SINE MIR 83 157 -51 316 362 43 0 chr1 207687563 207687704 -34976649 - MER5A DNA MER1_type 0 189 43 188 355 94 14 chr1 207687591 207687729 -34976624 + MER5A DNA MER1_type 40 188 -1 * 667 318 8 17 chr1 207688501 207688740 -34975613 + MIR SINE MIR 18 254 -8 898 216 41 0 chr1 207691804 207691975 -34972378 + MER45A DNA AcHobo 1 178 0 577 244 66 114 chr1 207692805 207692993 -34971360 + MIR SINE MIR 2 175 -87 1977 220 92 31 chr1 207692993 207693516 -34970837 + MLT1H1 LTR MaLR 1 555 0 577 244 66 114 chr1 207693516 207693598 -34970755 + MIR SINE MIR 175 259 -3 447 260 149 17 chr1 207693842 207693998 -34970355 - MER5A DNA MER1_type -6 183 4 441 274 64 68 chr1 207694165 207694446 -34969907 + MLT1L LTR MaLR 115 394 -221 199 253 13 51 chr1 207694823 207694902 -34969451 - L2 LINE L2 -217 3055 2980 1283 149 5 5 chr1 207695036 207695237 -34969116 - MLT1A1 LTR MaLR -164 201 1 862 141 7 7 chr1 207695271 207695413 -34968940 - AluSg/x SINE Alu -2 310 169 812 101 0 25 chr1 207695716 207695731 -34968622 - L1PA4 LINE L1 -22 6133 6119 19483 45 9 1 chr1 207695731 207698810 -34965543 - L1PA4 LINE L1 -4 6151 3055 812 101 0 25 chr1 207698810 207698913 -34965440 - L1PA4 LINE L1 -36 6119 6018 * 14723 45 3 3 chr1 207698893 207700708 -34963645 - L1PA4 LINE L1 -3012 3134 1320 8650 132 11 1 chr1 207700812 207702089 -34962264 - Tigger1 DNA MER2_type -1126 1292 3 250 346 0 47 chr1 207702141 207702248 -34962105 - MIR SINE MIR -89 119 23 200 240 211 0 chr1 207703189 207703293 -34961060 + MIR3 SINE MIR 7 132 -76 262 88 0 0 chr1 207703514 207703548 -34960805 - L1MA6 LINE L1 -520 5771 5738 2811 163 19 27 chr1 207703550 207703941 -34960412 + L1MA6 LINE L1 5777 6166 -134 1779 115 0 0 chr1 207703941 207704210 -34960143 + AluSx SINE Alu 48 316 0 2811 163 19 27 chr1 207704210 207704343 -34960010 + L1MA6 LINE L1 6166 6299 -1 873 353 119 16 chr1 207704356 207705315 -34959038 + L2 LINE L2 1405 2462 -852 5534 128 17 96 chr1 207706216 207706419 -34957934 - L1PA16 LINE L1 0 6166 5949 2090 144 0 0 chr1 207706419 207706711 -34957642 - AluSx SINE Alu -20 292 1 5534 128 17 96 chr1 207706711 207707907 -34956446 - L1PA16 LINE L1 -217 5949 4910 2082 128 0 0 chr1 207707987 207708275 -34956078 + AluSx SINE Alu 1 288 -24 255 355 69 58 chr1 207708276 207708552 -34955801 + L2 LINE L2 2695 2973 -341 236 286 18 0 chr1 207708739 207708795 -34955558 + L2 LINE L2 3242 3298 -15 252 300 156 44 chr1 207709656 207709836 -34954517 - MIR3 SINE MIR -2 206 7 * 299 305 146 7 chr1 207709831 207709982 -34954371 + MER5B DNA MER1_type 7 178 0 2268 105 0 0 chr1 207710118 207710412 -34953941 + AluSg SINE Alu 1 294 -16 313 353 21 53 chr1 207710937 207711124 -34953229 + MER5A DNA MER1_type 9 189 0 266 266 218 43 chr1 207711182 207711370 -34952983 + MIR SINE MIR 30 250 -12 266 247 78 0 chr1 207711587 207711664 -34952689 + MIR SINE MIR 71 153 -109 434 293 107 15 chr1 207711737 207711940 -34952413 - MIR SINE MIR -6 256 38 4377 135 24 24 chr1 207712994 207713143 -34951210 - MER50 LTR ERV1 -23 711 563 1934 141 48 0 chr1 207713143 207713434 -34950919 + AluSx SINE Alu 1 305 -7 4377 135 24 24 chr1 207713434 207713995 -34950358 - MER50 LTR ERV1 -170 564 1 305 314 113 43 chr1 207714130 207714502 -34949851 + L2 LINE L2 2824 3221 -51 231 302 220 6 chr1 207715841 207716000 -34948353 - L2 LINE L2 0 3272 3080 580 258 16 0 chr1 207716066 207716194 -34948159 + L2 LINE L2 3182 3311 -2 2532 79 0 6 chr1 207717240 207717555 -34946798 + AluSp SINE Alu 1 313 0 2605 176 63 20 chr1 207717754 207718265 -34946088 - MER21B LTR ERV1 -1 862 330 233 228 22 43 chr1 207718971 207719063 -34945290 - HAL1b LINE L1 -501 847 758 514 206 0 0 chr1 207719116 207719208 -34945145 + Tigger5 DNA MER2_type 2232 2323 0 611 301 76 43 chr1 207719208 207719882 -34944471 - HAL1b LINE L1 -598 750 55 20675 159 44 12 chr1 207719933 207725128 -34939225 - L1MA2 LINE L1 0 7723 2194 2664 16 7 13 chr1 207725128 207725438 -34938915 + AluY SINE Alu 1 308 -3 20675 159 44 12 chr1 207725438 207727597 -34936756 - L1MA2 LINE L1 -5529 2194 105 * 30691 121 15 57 chr1 207727571 207733995 -34930358 - L1PA7 LINE L1 0 7573 1428 474 216 8 40 chr1 207734002 207734127 -34930226 - L1MA2 LINE L1 -7434 131 11 638 252 101 21 chr1 207734879 207735117 -34929236 - L2 LINE L2 -1099 2215 1959 543 264 38 19 chr1 207737566 207737725 -34926628 - MIR SINE MIR -20 242 81 414 282 13 27 chr1 207737769 207737918 -34926435 + MER5A DNA MER1_type 37 183 -6 264 289 118 26 chr1 207738100 207738252 -34926101 + MIR SINE MIR 95 260 -2 233 217 261 0 chr1 207738614 207738683 -34925670 - MIR SINE MIR -15 247 161 663 129 0 0 chr1 207738688 207738781 -34925572 - Tigger1 DNA MER2_type 0 2418 2326 * 4847 126 12 30 chr1 207738773 207739530 -34924823 - Tigger1 DNA MER2_type -1675 743 1 243 247 185 25 chr1 207739537 207739618 -34924735 - MIR SINE MIR -112 150 57 188 386 29 7 chr1 207740328 207740468 -34923885 - MIR SINE MIR -16 246 104 5008 109 15 6 chr1 207740913 207741630 -34922723 + Tigger1 DNA MER2_type 20 743 -1675 506 207 0 0 chr1 207741622 207741709 -34922644 + Tigger1 DNA MER2_type 2326 2412 -6 * 2533 114 65 0 chr1 207741952 207742304 -34922049 - THE1C LTR MaLR 0 375 1 925 275 8 21 chr1 207742410 207742646 -34921707 + MIR SINE MIR 23 255 -7 293 128 0 0 chr1 207744102 207744141 -34920212 + AluS SINE Alu 227 265 -36 2200 89 0 4 chr1 207744144 207744424 -34919929 - AluSc SINE Alu -30 279 1 327 211 37 9 chr1 207745138 207745247 -34919106 + CT-rich Low_complexity Low_complexity 2 113 0 222 326 161 45 chr1 207745519 207745761 -34918592 + L2 LINE L2 2705 2974 -340 181 313 28 90 chr1 207745935 207746079 -34918274 - L2 LINE L2 -1 3271 3137 254 333 79 9 chr1 207746159 207746273 -34918080 - MIR3 SINE MIR -5 203 82 424 282 47 47 chr1 207746480 207746629 -34917724 + MIR SINE MIR 48 196 -66 3614 167 28 5 chr1 207747829 207748464 -34915889 + Tigger1 DNA MER2_type 7 656 -1762 20540 46 2 4 chr1 207748465 207750962 -34913391 + L1P LINE L1 4 2496 -3650 8180 112 18 20 chr1 207750963 207751029 -34913324 + Tigger1 DNA MER2_type 1193 1258 -1160 2439 85 0 16 chr1 207751029 207751345 -34913008 - AluY SINE Alu 0 311 1 8180 112 18 20 chr1 207751345 207752507 -34911846 + Tigger1 DNA MER2_type 1258 2418 0 818 304 90 32 chr1 207752603 207753005 -34911348 - L2 LINE L2 -4 3309 2885 225 0 0 0 chr1 207753197 207753222 -34911131 + (T)n Simple_repeat Simple_repeat 1 25 0 1508 75 0 0 chr1 207753273 207753459 -34910894 - L1PA5 LINE L1 -1 6153 5968 180 0 0 0 chr1 207753702 207753722 -34910631 + (A)n Simple_repeat Simple_repeat 1 20 0 210 328 31 0 chr1 207753722 207753786 -34910567 - L3 LINE CR1 -219 1358 1293 273 189 283 38 chr1 207753831 207753937 -34910416 + MIR SINE MIR 57 188 -74 344 200 56 11 chr1 207754011 207754101 -34910252 - L3 LINE CR1 -295 1282 1189 273 336 19 0 chr1 207755240 207755344 -34909009 - L3 LINE CR1 -25 1552 1447 499 327 13 69 chr1 207756608 207756773 -34907580 - L3 LINE CR1 -25 1552 1410 1458 170 76 76 chr1 207756773 207757143 -34907210 + MLT1A2 LTR MaLR 5 374 0 499 327 13 69 chr1 207757143 207757283 -34907070 - L3 LINE CR1 -167 1410 1264 239 306 54 45 chr1 207759390 207759501 -34904852 - MER117 DNA MER1_type -84 113 2 251 273 91 35 chr1 207765315 207765458 -34898895 + MIR SINE MIR 71 221 -41 201 147 29 0 chr1 207766503 207766537 -34897816 + CT-rich Low_complexity Low_complexity 2 36 0 371 293 29 43 chr1 207767783 207767923 -34896430 - L2 LINE L2 -1 3271 3134 407 298 168 5 chr1 207769429 207769637 -34894716 + L2 LINE L2 2333 2574 -740 362 355 138 12 chr1 207769652 207769993 -34894360 + L2 LINE L2 2930 3313 0 252 282 13 13 chr1 207769995 207770073 -34894280 - MIR SINE MIR -126 136 59 290 290 35 69 chr1 207770495 207770640 -34893713 - MIR SINE MIR -54 208 69 271 240 0 40 chr1 207770998 207771073 -34893280 + CT-rich Low_complexity Low_complexity 3 74 0 186 333 111 0 chr1 207771253 207771361 -34892992 - MIR SINE MIR -23 239 120 23 0 0 0 chr1 207771704 207771727 -34892626 + AT_rich Low_complexity Low_complexity 1 23 0 366 223 1 0 chr1 207772499 207772589 -34891764 + MIR SINE MIR 49 139 -69 260 352 25 37 chr1 207772596 207772756 -34891597 - MER5B DNA MER1_type -7 171 23 194 237 0 0 chr1 207772747 207772785 -34891568 + MIR3 SINE MIR 151 188 -20 * 243 0 0 0 chr1 207773297 207773324 -34891029 + (T)n Simple_repeat Simple_repeat 1 27 0 281 231 0 22 chr1 207774429 207774520 -34889833 + CT-rich Low_complexity Low_complexity 5 93 0 362 208 283 0 chr1 207774945 207775051 -34889302 + MLT1J2 LTR MaLR 266 401 -49 286 376 40 32 chr1 207775317 207775564 -34888789 + L2 LINE L2 1060 1308 -2006 1922 166 3 10 chr1 207776085 207776399 -34887954 - AluSx SINE Alu 0 312 1 735 256 51 31 chr1 207779050 207779304 -34885049 + MIR SINE MIR 2 260 -2 12087 138 48 9 chr1 207779501 207781471 -34882882 + Tigger1 DNA MER2_type 1 2048 -370 2502 158 57 14 chr1 207782406 207782848 -34881505 - MLT2C2 LTR ERVL -3 461 1 255 300 0 0 chr1 207783287 207783357 -34880996 + T-rich Low_complexity Low_complexity 5 74 0 667 236 29 0 chr1 207785204 207785344 -34879009 + MIR SINE MIR 39 182 -80 2269 92 0 29 chr1 207785635 207785950 -34878403 + AluSg SINE Alu 1 306 -4 192 77 0 0 chr1 207787586 207787612 -34876741 + (CA)n Simple_repeat Simple_repeat 1 26 0 1397 248 21 21 chr1 207787762 207788142 -34876211 - L1ME1 LINE L1 -6 6160 5784 207 292 11 11 chr1 207788146 207788235 -34876118 + (TA)n Simple_repeat Simple_repeat 2 90 0 569 338 43 34 chr1 207789298 207789951 -34874402 - L1M4 LINE L1 -1559 4587 3929 1127 138 0 0 chr1 207790427 207790594 -34873759 + AluSg/x SINE Alu 143 309 -1 197 341 124 67 chr1 207790642 207790909 -34873444 + L2 LINE L2 2830 3111 -161 30 45 0 0 chr1 207791135 207791179 -34873174 + AT_rich Low_complexity Low_complexity 1 44 0 281 223 92 31 chr1 207791211 207791341 -34873012 + L1MC4 LINE L1 6608 6745 -1297 933 269 33 9 chr1 207791741 207791953 -34872400 + MER58A DNA MER1_type 1 217 -7 307 275 152 0 chr1 207793101 207793239 -34871114 + MIR SINE MIR 104 262 0 561 316 14 9 chr1 207794370 207794588 -34869765 - MIR SINE MIR -11 251 33 508 153 0 18 chr1 207794831 207794942 -34869411 + GA-rich Low_complexity Low_complexity 3 111 0 210 171 0 0 chr1 207795015 207795056 -34869297 + (TG)n Simple_repeat Simple_repeat 2 42 0 376 259 175 45 chr1 207795347 207795633 -34868720 + L2 LINE L2 2991 3313 0 248 0 31 0 chr1 207795947 207795979 -34868374 + (CA)n Simple_repeat Simple_repeat 1 33 0 610 261 30 10 chr1 207796002 207796201 -34868152 - MIR SINE MIR 0 262 60 2255 120 48 28 chr1 207796738 207797095 -34867258 + THE1B LTR MaLR 1 364 0 334 305 27 43 chr1 207797820 207798007 -34866346 + L2 LINE L2 3127 3310 -3 22 0 0 0 chr1 207799690 207799712 -34864641 + AT_rich Low_complexity Low_complexity 1 22 0 190 285 171 32 chr1 207799932 207800055 -34864298 - L2 LINE L2 -9 3263 3124 210 280 113 36 chr1 207802497 207802665 -34861688 - L3b LINE CR1 -153 1430 1250 2329 95 10 10 chr1 207803046 207803350 -34861003 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr1 207803489 207803511 -34860842 + AT_rich Low_complexity Low_complexity 1 22 0 208 277 21 0 chr1 207804097 207804191 -34860162 + CT-rich Low_complexity Low_complexity 1 96 0 180 0 0 0 chr1 207805337 207805357 -34858996 + (A)n Simple_repeat Simple_repeat 1 20 0 185 108 27 0 chr1 207805931 207805968 -34858385 + (TG)n Simple_repeat Simple_repeat 1 38 0 346 228 25 0 chr1 207806610 207806689 -34857664 + MIR SINE MIR 70 150 -112 15355 122 18 29 chr1 207806769 207807611 -34856742 - Tigger1 DNA MER2_type 0 2418 1568 2215 120 0 3 chr1 207807611 207807910 -34856443 - AluSx SINE Alu -14 298 1 15355 122 18 29 chr1 207807910 207809295 -34855058 - Tigger1 DNA MER2_type -850 1568 219 1767 159 28 3 chr1 207809295 207809578 -34854775 + AluJb SINE Alu 1 290 -22 15355 122 18 29 chr1 207809578 207809795 -34854558 - Tigger1 DNA MER2_type -2199 219 1 225 79 26 0 chr1 207810345 207810383 -34853970 - Tigger1 DNA MER2_type -168 2250 2212 551 125 0 0 chr1 207810921 207811001 -34853352 - MADE1 DNA Mariner 0 80 1 205 244 0 0 chr1 207811049 207811090 -34853263 + CT-rich Low_complexity Low_complexity 3 43 0 1409 209 75 31 chr1 207811344 207811427 -34852926 + MLT1A2 LTR MaLR 1 79 -295 2304 137 66 22 chr1 207811427 207811837 -34852516 - MSTA LTR MaLR 0 428 1 1409 209 75 31 chr1 207811837 207812111 -34852242 + MLT1A2 LTR MaLR 79 374 0 345 236 176 70 chr1 207813752 207813951 -34850402 + MER58A DNA MER1_type 2 221 -3 446 267 75 5 chr1 207814121 207814308 -34850045 - MIR SINE MIR -50 212 13 333 254 88 9 chr1 207815852 207815966 -34848387 - MIR SINE MIR -118 144 22 767 194 8 0 chr1 207816192 207816321 -34848032 - FLAM_A SINE Alu -3 130 1 348 273 83 30 chr1 207817658 207817790 -34846563 - MER112 DNA MER1_type -6 254 116 626 222 0 8 chr1 207817842 207817959 -34846394 + FLAM_C SINE Alu 1 116 -27 181 56 28 28 chr1 207817966 207818002 -34846351 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 303 333 0 0 chr1 207818611 207818716 -34845637 + MIR SINE MIR 31 135 -73 1099 151 16 5 chr1 207820597 207820783 -34843570 - MER5A DNA MER1_type -1 188 1 427 250 9 0 chr1 207821179 207821287 -34843066 - MER103 DNA DNA -55 111 3 236 314 29 10 chr1 207822664 207822766 -34841587 + L2 LINE L2 2259 2362 -952 234 143 24 0 chr1 207823365 207823407 -34840946 - Zaphod DNA AcHobo -1361 2670 2628 224 320 66 33 chr1 207825696 207825818 -34838535 + L2 LINE L2 3185 3310 -3 203 156 0 0 chr1 207825844 207825876 -34838477 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 3052 268 91 30 chr1 207825876 207827393 -34836960 + L2 LINE L2 1698 3312 -1 271 219 119 60 chr1 207828749 207828872 -34835481 - MIR3 SINE MIR -19 189 57 21 0 0 0 chr1 207829077 207829098 -34835255 + AT_rich Low_complexity Low_complexity 1 21 0 2613 94 5 46 chr1 207829100 207829495 -34834858 - L1PB2 LINE L1 -5 6146 5768 4141 128 59 6 chr1 207829879 207830541 -34833812 - L1PA16 LINE L1 -2 6164 5468 21 36 0 0 chr1 207831217 207831245 -34833108 + AT_rich Low_complexity Low_complexity 1 28 0 1109 111 24 24 chr1 207832076 207832284 -34832069 + L1MA7 LINE L1 6079 6286 -5 492 185 12 26 chr1 207832309 207832579 -34831774 + (TA)n Simple_repeat Simple_repeat 1 266 0 426 196 0 33 chr1 207832611 207832795 -34831558 + (TA)n Simple_repeat Simple_repeat 2 179 0 27 49 0 0 chr1 207832957 207832998 -34831355 + AT_rich Low_complexity Low_complexity 1 41 0 1172 273 166 19 chr1 207833346 207833928 -34830425 - HAL1 LINE L1 -574 1933 1247 2835 128 14 18 chr1 207833928 207834364 -34829989 - Tigger2a DNA MER2_type 0 434 1 1172 273 166 19 chr1 207834364 207834421 -34829932 - HAL1 LINE L1 -1260 1247 1200 243 0 0 0 chr1 207834521 207834548 -34829805 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 935 100 0 0 chr1 207834553 207834673 -34829680 - AluSq/x SINE Alu -193 120 1 338 306 96 6 chr1 207834673 207834830 -34829523 - HAL1 LINE L1 -1412 1095 925 513 215 65 0 chr1 207836545 207836652 -34827701 + MER81 DNA DNA 1 114 0 2270 238 69 6 chr1 207836714 207837251 -34827102 + MLT1E LTR MaLR 17 587 -6 228 368 0 0 chr1 207837647 207837734 -34826619 + CT-rich Low_complexity Low_complexity 1 87 0 1623 74 10 0 chr1 207838239 207838481 -34825872 + AluY SINE Alu 77 320 0 209 184 0 0 chr1 207838833 207838871 -34825482 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr1 207839819 207839847 -34824506 + AT_rich Low_complexity Low_complexity 1 28 0 1746 149 14 28 chr1 207839847 207840173 -34824180 + AluJb SINE Alu 1 322 0 2424 145 17 10 chr1 207840180 207840593 -34823760 + L1MA8 LINE L1 5596 6011 -280 221 154 0 26 chr1 207840653 207840692 -34823661 - MIR SINE MIR -189 73 36 255 295 0 0 chr1 207840818 207840896 -34823457 - L2 LINE L2 -1 3312 3235 297 109 0 0 chr1 207841008 207841054 -34823299 + (CA)n Simple_repeat Simple_repeat 2 47 0 476 251 115 45 chr1 207841420 207841658 -34822695 - L1ME4a LINE L1 -205 5916 5641 402 196 0 10 chr1 207841658 207841755 -34822598 - L1MA4 LINE L1 -1 6299 6204 476 251 115 45 chr1 207841755 207841813 -34822540 - L1ME4a LINE L1 -480 5641 5589 6339 119 23 3 chr1 207841976 207843616 -34820737 + L1PA13 LINE L1 4486 6162 -1 218 32 32 0 chr1 207843641 207843672 -34820681 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr1 207844423 207844449 -34819904 + (A)n Simple_repeat Simple_repeat 1 26 0 243 340 21 11 chr1 207844462 207844556 -34819797 + MIR SINE MIR 35 129 -79 312 153 17 0 chr1 207844808 207844867 -34819486 - MIR SINE MIR -100 162 103 341 236 21 2 chr1 207846240 207846359 -34817994 + MLT1J2 LTR MaLR 73 192 -217 1390 203 47 14 chr1 207847012 207847308 -34817045 + AluJo SINE Alu 1 306 -6 376 252 153 26 chr1 207847387 207847658 -34816695 + L1M4 LINE L1 5092 5399 -747 360 269 148 13 chr1 207848439 207848588 -34815765 + MIR SINE MIR 87 255 -7 725 216 0 16 chr1 207848643 207848768 -34815585 - FLAM_C SINE Alu -9 124 2 2102 133 27 0 chr1 207849007 207849308 -34815045 + AluSx SINE Alu 1 309 -3 620 268 37 49 chr1 207849428 207849671 -34814682 + L2 LINE L2 3074 3313 0 2183 175 18 3 chr1 207849713 207850095 -34814258 + MLT1B LTR MaLR 3 390 0 2217 102 0 3 chr1 207850196 207850490 -34813863 - AluSq SINE Alu -20 293 1 2281 146 30 30 chr1 207851765 207852129 -34812224 - THE1B LTR MaLR 0 364 1 279 136 34 34 chr1 207853451 207853510 -34810843 - MER112 DNA MER1_type -91 169 111 243 160 40 0 chr1 207853644 207853694 -34810659 + LTR33 LTR ERVL 109 160 -361 338 208 7 132 chr1 207853844 207853988 -34810365 - MER112 DNA MER1_type -134 126 1 190 286 89 0 chr1 207854065 207854121 -34810232 + L2 LINE L2 3194 3254 -18 519 242 147 6 chr1 207854466 207854623 -34809730 + MER5A DNA MER1_type 9 187 -2 350 226 65 0 chr1 207854961 207855054 -34809299 + MIR SINE MIR 93 191 -71 259 262 117 48 chr1 207855670 207855773 -34808580 - L2 LINE L2 -2 3270 3161 356 369 28 56 chr1 207855885 207856275 -34808078 + L2 LINE L2 2816 3194 -78 218 259 68 93 chr1 207856440 207856602 -34807751 + MIR SINE MIR 29 144 -64 265 338 83 0 chr1 207857266 207857399 -34806954 + MER103 DNA DNA 20 163 -3 241 326 43 0 chr1 207858951 207859043 -34805310 + HAL1 LINE L1 796 891 -1616 527 349 67 0 chr1 207859165 207859403 -34804950 - MIR SINE MIR -8 254 1 535 246 120 85 chr1 207860469 207860903 -34803450 - MLT1J LTR MaLR -19 492 44 222 37 0 0 chr1 207861427 207861454 -34802899 + (CA)n Simple_repeat Simple_repeat 1 27 0 452 258 104 75 chr1 207862269 207862509 -34801844 - MER112 DNA MER1_type -6 254 8 349 239 9 35 chr1 207862749 207862862 -34801491 - L1M4 LINE L1 -1488 4658 4549 233 294 16 48 chr1 207863162 207863288 -34801065 + L1M4 LINE L1 4537 4658 -1488 667 276 124 59 chr1 207863665 207864321 -34800032 + L2 LINE L2 2564 3258 -55 300 53 0 0 chr1 207864476 207864514 -34799839 + (TG)n Simple_repeat Simple_repeat 2 39 0 1548 163 57 15 chr1 207864881 207865145 -34799208 + AluJb SINE Alu 1 275 -37 34 65 0 0 chr1 207867532 207867594 -34796759 + AT_rich Low_complexity Low_complexity 1 62 0 2304 164 117 26 chr1 207867629 207868091 -34796262 - MLT1D LTR MaLR 0 505 2 22 0 0 0 chr1 207868545 207868567 -34795786 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 207870239 207870259 -34794094 + (T)n Simple_repeat Simple_repeat 1 20 0 498 269 13 18 chr1 207870748 207870898 -34793455 + MIR3 SINE MIR 57 205 -3 239 376 34 8 chr1 207871325 207871442 -34792911 + MIR3 SINE MIR 82 201 -7 679 245 42 68 chr1 207872725 207872962 -34791391 + MIR SINE MIR 28 258 -4 795 183 0 42 chr1 207872988 207873130 -34791223 + MER45A DNA AcHobo 43 178 0 386 279 39 0 chr1 207873844 207873948 -34790405 - MIR3 SINE MIR -3 205 98 308 255 96 114 chr1 207874453 207874786 -34789567 - L1ME LINE L1 -527 5594 5268 25 0 0 0 chr1 207874827 207874852 -34789501 + AT_rich Low_complexity Low_complexity 1 25 0 233 29 0 29 chr1 207874866 207874901 -34789452 + (TTG)n Simple_repeat Simple_repeat 2 35 0 180 267 67 40 chr1 207875000 207875075 -34789278 + MIR3 SINE MIR 132 208 0 2603 232 114 47 chr1 207875668 207876557 -34787796 + MER45C DNA AcHobo 6 953 0 249 179 152 125 chr1 207876910 207877022 -34787331 - MIR SINE MIR -39 223 109 1894 132 19 51 chr1 207877513 207877824 -34786529 + AluSx SINE Alu 1 301 -11 276 357 50 7 chr1 207878999 207879139 -34785214 + L3b LINE CR1 1343 1488 -95 2207 129 0 0 chr1 207880826 207881136 -34783217 + AluSx SINE Alu 1 310 -2 300 353 15 23 chr1 207882143 207882276 -34782077 + L2 LINE L2 3136 3267 -5 40 21 0 0 chr1 207882618 207882665 -34781688 + AT_rich Low_complexity Low_complexity 1 47 0 244 267 37 106 chr1 207883427 207883588 -34780765 + MIR3 SINE MIR 30 179 -29 487 264 54 0 chr1 207883919 207884067 -34780286 + MIR SINE MIR 99 254 -8 2011 162 0 0 chr1 207884748 207885051 -34779302 + AluSx SINE Alu 1 303 -9 297 286 188 0 chr1 207886106 207886239 -34778114 + MIR3 SINE MIR 43 200 -8 321 263 147 11 chr1 207886343 207886438 -34777915 - L2 LINE L2 -32 3240 3133 1817 164 3 7 chr1 207886619 207886912 -34777441 - AluJb SINE Alu -18 294 3 419 184 35 23 chr1 207887049 207887136 -34777217 - L2 LINE L2 0 3272 3185 980 255 116 53 chr1 207887145 207887621 -34776732 - MLT1H LTR MaLR -6 543 14 933 254 17 25 chr1 207887641 207887881 -34776472 + MIR SINE MIR 17 254 -8 207 114 0 0 chr1 207887882 207887917 -34776436 + (TTA)n Simple_repeat Simple_repeat 1 35 0 221 164 73 18 chr1 207888113 207888168 -34776185 - L2 LINE L2 -250 3063 3006 451 329 27 0 chr1 207888384 207888530 -34775823 + MIR SINE MIR 31 180 -82 196 281 0 0 chr1 207888616 207888673 -34775680 + MIR SINE MIR 174 230 -32 448 231 63 84 chr1 207889941 207890143 -34774210 + MIR SINE MIR 10 209 -53 215 275 50 25 chr1 207890318 207890398 -34773955 - L2 LINE L2 -50 3263 3182 1900 223 48 12 chr1 207891844 207892256 -34772097 + MER119 DNA MER1_type 157 583 0 500 296 62 17 chr1 207892301 207892477 -34771876 - MIR3 SINE MIR -9 199 16 1938 137 0 42 chr1 207892726 207893039 -34771314 + AluSx SINE Alu 1 300 -12 228 135 0 0 chr1 207893038 207893075 -34771278 + (TA)n Simple_repeat Simple_repeat 1 37 0 244 215 31 31 chr1 207894464 207894529 -34769824 - MIR SINE MIR -55 207 143 3445 162 18 9 chr1 207894998 207895739 -34768614 + L1MC1 LINE L1 5406 6333 0 1393 289 100 46 chr1 207895836 207897422 -34766931 + L1M4 LINE L1 3658 5328 -818 4444 212 54 55 chr1 207897663 207899120 -34765233 + L1MC/D LINE L1 3978 5421 -909 1603 192 19 10 chr1 207899120 207899427 -34764926 + AluJo SINE Alu 1 310 -2 4444 212 54 55 chr1 207899427 207899594 -34764759 + L1MC/D LINE L1 5421 5587 -743 207 0 0 0 chr1 207900173 207900196 -34764157 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 469 275 76 54 chr1 207900460 207900880 -34763473 + L1ME LINE L1 389 814 -5269 * 1609 257 77 21 chr1 207900858 207901713 -34762640 + L1ME LINE L1 2238 3173 -2907 327 379 12 6 chr1 207901938 207902099 -34762254 - MER5A DNA MER1_type -2 187 26 366 74 0 0 chr1 207902177 207902231 -34762122 + (GA)n Simple_repeat Simple_repeat 1 54 0 516 250 16 32 chr1 207902838 207902962 -34761391 - MIR SINE MIR -60 148 27 244 296 0 23 chr1 207903718 207903806 -34760547 + CT-rich Low_complexity Low_complexity 4 89 0 207 0 0 0 chr1 207903808 207903831 -34760522 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 499 120 46 23 chr1 207906094 207906269 -34758084 + (TA)n Simple_repeat Simple_repeat 2 180 0 1421 234 12 6 chr1 207906279 207906600 -34757753 - MLT2C1 LTR ERVL -55 342 20 270 56 0 0 chr1 207907894 207907930 -34756423 + (CA)n Simple_repeat Simple_repeat 1 36 0 626 250 108 15 chr1 207908842 207909046 -34755307 - MIR SINE MIR -11 251 29 3469 184 118 12 chr1 207909170 207910093 -34754260 + L1ME1 LINE L1 5157 6162 -4 723 288 67 42 chr1 207910116 207910429 -34753924 - LTR16C LTR ERVL -1 490 170 469 206 69 69 chr1 207910707 207910867 -34753486 - MIR SINE MIR -21 241 82 538 261 97 81 chr1 207912903 207913263 -34751090 + MLT1I LTR MaLR 6 371 -38 6019 128 14 2 chr1 207916071 207916968 -34747385 + Tigger1 DNA MER2_type 32 939 -1479 2779 146 21 4 chr1 207916963 207917428 -34746925 + Tigger1 DNA MER2_type 1946 2418 0 * 1433 288 58 65 chr1 207917433 207918292 -34746061 + ERVL LTR ERVL 1276 2201 -2795 253 311 38 0 chr1 207918309 207918415 -34745938 + ERVL LTR ERVL 5274 5383 -381 249 194 14 42 chr1 207918622 207918694 -34745659 + LTR16A LTR ERVL 106 175 -275 413 333 97 13 chr1 207918760 207918997 -34745356 + LTR16A1 LTR ERVL 199 455 -2 232 345 17 26 chr1 207922835 207922951 -34741402 + L3b LINE CR1 1150 1264 -319 240 156 31 78 chr1 207923052 207923116 -34741237 + L3 LINE CR1 1516 1576 -1 791 213 139 126 chr1 207923600 207923966 -34740387 + MLT1A2 LTR MaLR 4 374 0 3927 180 16 23 chr1 207923966 207924768 -34739585 + MLT1A2-int LTR MaLR 1 888 -483 464 161 58 0 chr1 207924836 207924923 -34739430 + MLT-int LTR MaLR 680 771 -964 2075 173 16 62 chr1 207925054 207925487 -34738866 + MLT1B-int LTR MaLR 1317 1729 -6 1554 201 27 74 chr1 207925495 207925902 -34738451 + MLT1B LTR MaLR 3 390 0 337 250 69 69 chr1 207926900 207927016 -34737337 + MIR SINE MIR 16 131 -77 618 285 38 25 chr1 207927024 207927259 -34737094 + MIR SINE MIR 7 244 -18 195 271 100 0 chr1 207927269 207927339 -34737014 + MIR SINE MIR 116 192 -70 318 289 79 0 chr1 207927925 207928039 -34736314 - MER103 DNA DNA -43 123 1 309 51 0 0 chr1 207928741 207928780 -34735573 + (CA)n Simple_repeat Simple_repeat 1 39 0 288 351 190 11 chr1 207929033 207929312 -34735041 + L2 LINE L2 2502 2830 -484 213 299 39 0 chr1 207929385 207929462 -34734891 + L2 LINE L2 3187 3266 -6 1844 153 188 37 chr1 207929540 207929972 -34734381 - MLT1D LTR MaLR -8 497 1 216 362 145 40 chr1 207930258 207930360 -34733993 - L2 LINE L2 -506 2808 2718 886 236 62 0 chr1 207930360 207930555 -34733798 + MER3 DNA MER1_type 1 207 -2 216 362 145 40 chr1 207930555 207931444 -34732909 - L2 LINE L2 -596 2718 1713 242 238 16 16 chr1 207932334 207932397 -34731956 + GA-rich Low_complexity Low_complexity 2 64 0 236 246 31 0 chr1 207932766 207932831 -34731522 - MIR SINE MIR -64 144 78 351 154 0 0 chr1 207932994 207933059 -34731294 + (CA)n Simple_repeat Simple_repeat 2 66 0 990 217 5 5 chr1 207933318 207933507 -34730846 - MER5A DNA MER1_type 0 189 1 207 220 20 0 chr1 207933916 207933966 -34730387 - L2 LINE L2 0 3272 3222 226 328 243 0 chr1 207934115 207934292 -34730061 - L2 LINE L2 -1026 2288 2069 1292 248 41 15 chr1 207934627 207935014 -34729339 + L1ME1 LINE L1 5774 6163 -3 2173 168 63 21 chr1 207935054 207935434 -34728919 + MSTD LTR MaLR 1 396 0 2194 138 0 0 chr1 207937352 207937657 -34726696 + AluSx SINE Alu 1 305 -7 206 356 37 43 chr1 207938282 207938470 -34725883 - MIR SINE MIR -54 208 22 305 368 73 61 chr1 207938633 207938975 -34725378 + L2 LINE L2 2918 3263 -9 219 69 0 0 chr1 207938982 207939011 -34725342 + (ATG)n Simple_repeat Simple_repeat 1 29 0 618 303 169 33 chr1 207939087 207939483 -34724870 - MLT1J2 LTR MaLR 0 450 1 739 274 146 30 chr1 207940825 207941194 -34723159 - MLT1J2 LTR MaLR -15 435 24 513 266 69 27 chr1 207942820 207943008 -34721345 + MIR SINE MIR 54 249 -13 229 274 32 42 chr1 207943598 207943693 -34720660 + L3 LINE CR1 376 469 -1108 1742 132 44 7 chr1 207943971 207944266 -34720087 - L1MA5A LINE L1 0 6297 5992 868 112 0 24 chr1 207944276 207944401 -34719952 - L1PB1 LINE L1 -1 6150 6029 2316 232 58 67 chr1 207945387 207945846 -34718507 + L1ME1 LINE L1 4815 5277 -889 460 75 0 25 chr1 207945846 207945926 -34718427 + (TA)n Simple_repeat Simple_repeat 2 79 0 2243 122 0 3 chr1 207945934 207946245 -34718108 + AluSg SINE Alu 1 310 0 2316 232 58 67 chr1 207946245 207947118 -34717235 + L1ME1 LINE L1 5284 6148 -18 237 167 0 19 chr1 207947120 207947174 -34717179 + A-rich Low_complexity Low_complexity 3 55 0 794 203 82 11 chr1 207947781 207948037 -34716316 + MER2 DNA MER2_type 2 344 -1 253 277 118 50 chr1 207948547 207948666 -34715687 + L2 LINE L2 3145 3271 -1 552 216 6 17 chr1 207948760 207948936 -34715417 + GA-rich Low_complexity Low_complexity 3 176 0 214 297 31 0 chr1 207949909 207949973 -34714380 - L2 LINE L2 -2 3270 3205 190 266 96 11 chr1 207950973 207951067 -34713286 - MIR SINE MIR -87 121 20 230 372 63 34 chr1 207951206 207951413 -34712940 + MIR SINE MIR 50 262 0 677 58 128 0 chr1 207951672 207951758 -34712595 + AluSg/x SINE Alu 198 294 -18 719 214 113 0 chr1 207951758 207951926 -34712427 - MIR SINE MIR -64 198 12 720 292 63 47 chr1 207955511 207956087 -34708266 + L1ME4a LINE L1 5326 5910 -211 280 258 136 15 chr1 207956109 207956241 -34708112 + L2 LINE L2 3166 3313 0 771 240 72 23 chr1 207956245 207956466 -34707887 - MIR SINE MIR -24 238 7 245 250 56 100 chr1 207956466 207956626 -34707727 + L1ME4a LINE L1 5952 6104 -17 180 0 0 0 chr1 207956701 207956721 -34707632 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 230 261 15 15 chr1 207957030 207957095 -34707258 - L2 LINE L2 -7 3306 3242 940 200 0 0 chr1 207957101 207957271 -34707082 - AluJb SINE Alu -7 305 136 227 240 67 27 chr1 207957496 207957571 -34706782 + L2 LINE L2 3147 3224 -48 211 396 77 11 chr1 207957833 207958106 -34706247 - L2 LINE L2 -470 2844 2554 251 226 69 49 chr1 207959639 207959741 -34704612 + MIR SINE MIR 138 241 -21 344 161 65 137 chr1 207959818 207959942 -34704411 - LTR67 LTR ERVL -10 547 433 2318 78 0 26 chr1 207959965 207960272 -34704081 + AluY SINE Alu 5 303 -8 274 83 0 0 chr1 207960453 207960489 -34703864 + MLT1J LTR MaLR 458 493 -18 288 91 0 0 chr1 207961104 207961148 -34703205 + (TCC)n Simple_repeat Simple_repeat 2 45 0 2189 131 24 44 chr1 207961397 207961780 -34702573 + THE1C LTR MaLR 1 375 0 187 175 25 25 chr1 207963499 207963539 -34700814 + MIR SINE MIR 78 117 -91 191 281 24 49 chr1 207963630 207963712 -34700641 - MIR SINE MIR -120 142 63 30 27 0 0 chr1 207964740 207964777 -34699576 + AT_rich Low_complexity Low_complexity 1 37 0 270 295 0 39 chr1 207965597 207965675 -34698678 - L2 LINE L2 0 3313 3239 2207 222 58 24 chr1 207966053 207966603 -34697750 - L1ME2 LINE L1 -1 6163 5595 1569 22 27 11 chr1 207966614 207966798 -34697555 - L1PA2 LINE L1 -5 6150 5964 3463 18 0 0 chr1 207966798 207967186 -34697167 + L1PA2 LINE L1 5593 5980 -175 1044 179 88 58 chr1 207967187 207967307 -34697046 - L1ME2 LINE L1 -575 5589 5474 2381 96 7 0 chr1 207967307 207967608 -34696745 - AluSq SINE Alu -10 303 1 1044 179 88 58 chr1 207967608 207967888 -34696465 - L1ME2 LINE L1 -690 5474 5182 219 341 67 45 chr1 207968143 207968322 -34696031 + L2 LINE L2 2243 2425 -889 236 213 49 0 chr1 207968484 207968545 -34695808 + L2 LINE L2 2550 2613 -701 695 282 127 65 chr1 207968563 207968996 -34695357 + L2 LINE L2 2854 3313 0 304 292 39 46 chr1 207969768 207969898 -34694455 + MIR3 SINE MIR 15 143 -65 244 164 18 55 chr1 207970044 207970099 -34694254 - MIR SINE MIR -1 261 209 330 98 0 0 chr1 207970437 207970488 -34693865 + (CA)n Simple_repeat Simple_repeat 2 52 0 683 234 101 5 chr1 207970494 207970682 -34693671 - MIR SINE MIR -8 254 49 3214 58 5 0 chr1 207970686 207971068 -34693285 + L1PA8 LINE L1 5782 6165 -7 517 293 13 27 chr1 207971327 207971477 -34692876 + MIR3 SINE MIR 15 162 -46 841 189 30 0 chr1 207972124 207972288 -34692065 + L1MA8 LINE L1 6118 6286 -5 26 0 0 0 chr1 207972292 207972318 -34692035 + AT_rich Low_complexity Low_complexity 1 26 0 353 211 13 0 chr1 207972731 207972807 -34691546 + MER116 DNA Mariner 1 77 -3 202 265 162 15 chr1 207972812 207972880 -34691473 - L2 LINE L2 -35 3237 3160 1058 162 0 68 chr1 207973589 207973780 -34690573 - MER45A DNA AcHobo 0 178 1 195 186 58 139 chr1 207973916 207974002 -34690351 - MIR SINE MIR -52 210 132 259 196 0 0 chr1 207974004 207974050 -34690303 + MLT2B2 LTR ERVL 8 53 -462 216 358 79 6 chr1 207974419 207974584 -34689769 - L3b LINE CR1 -81 1502 1326 965 211 22 57 chr1 207974797 207975024 -34689329 + MER20 DNA MER1_type 1 219 0 366 293 35 40 chr1 207975033 207975231 -34689122 - MER117 DNA MER1_type 0 197 1 218 161 0 36 chr1 207975344 207975400 -34688953 + GA-rich Low_complexity Low_complexity 4 57 0 510 347 5 5 chr1 207977802 207977995 -34686358 - MIR3 SINE MIR -13 195 3 624 246 27 55 chr1 207980603 207980764 -34683589 - MER5B DNA MER1_type 0 178 21 2014 213 23 39 chr1 207980764 207981277 -34683076 + MLT1D LTR MaLR 1 505 0 624 246 27 55 chr1 207981277 207981298 -34683055 - MER5B DNA MER1_type -157 21 1 539 349 147 21 chr1 207981298 207981679 -34682674 + L2 LINE L2 2875 3304 -9 821 268 67 63 chr1 207982913 207983630 -34680723 - L1ME LINE L1 -4952 1309 546 305 295 71 36 chr1 207985481 207985593 -34678760 + MIR SINE MIR 31 146 -116 427 103 0 0 chr1 207985594 207985652 -34678701 - U2 snRNA snRNA -130 58 1 231 296 1 27 chr1 207986944 207987017 -34677336 + MIR SINE MIR 6 79 -129 1603 185 0 40 chr1 207987411 207987738 -34676615 + AluJo SINE Alu 1 315 0 32 26 0 0 chr1 207987962 207988001 -34676352 + AT_rich Low_complexity Low_complexity 1 39 0 294 282 26 0 chr1 207988073 207988190 -34676163 + (TA)n Simple_repeat Simple_repeat 1 120 0 431 286 38 93 chr1 207988303 207988722 -34675631 + MLT1J LTR MaLR 116 511 0 281 352 153 27 chr1 207989308 207989720 -34674633 + L2 LINE L2 2388 2851 -463 183 257 143 0 chr1 207990073 207990143 -34674210 - L3 LINE CR1 -57 1520 1441 23 54 0 0 chr1 207990834 207990871 -34673482 + AT_rich Low_complexity Low_complexity 1 37 0 579 261 127 37 chr1 207992025 207992540 -34671813 - L1MC/D LINE L1 -743 5403 4897 1527 138 165 4 chr1 207992769 207993029 -34671324 - AluSx SINE Alu 0 302 1 185 0 0 39 chr1 207993411 207993437 -34670916 + (TA)n Simple_repeat Simple_repeat 1 25 0 226 297 14 27 chr1 207995799 207995873 -34668480 - MER5A DNA MER1_type 0 189 117 2114 121 16 7 chr1 207996869 207997174 -34667179 + AluSp SINE Alu 1 308 -5 393 122 0 0 chr1 207997391 207997465 -34666888 + (TC)n Simple_repeat Simple_repeat 1 74 0 197 108 27 0 chr1 207997920 207997957 -34666396 + CT-rich Low_complexity Low_complexity 2 39 0 3681 119 50 0 chr1 207998633 207999135 -34665218 - MER1A DNA MER1_type 0 527 1 22 0 0 0 chr1 207999839 207999861 -34664492 + AT_rich Low_complexity Low_complexity 1 22 0 368 211 151 30 chr1 208000590 208000756 -34663597 - Charlie7 DNA MER1_type 0 2612 2427 324 122 0 95 chr1 208000725 208000799 -34663554 - Charlie7 DNA MER1_type -2503 109 43 * 207 301 0 14 chr1 208001621 208001694 -34662659 + (TA)n Simple_repeat Simple_repeat 1 72 0 325 250 42 31 chr1 208003038 208003134 -34661219 + L2 LINE L2 3190 3286 -27 586 284 102 33 chr1 208003186 208003652 -34660701 + MLT1H1 LTR MaLR 21 549 0 246 105 0 0 chr1 208004388 208004426 -34659927 + (T)n Simple_repeat Simple_repeat 1 38 0 329 245 116 38 chr1 208005810 208005956 -34658397 - MLT1J2 LTR MaLR -133 276 103 252 0 0 0 chr1 208005956 208005984 -34658369 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 329 245 116 38 chr1 208005984 208006076 -34658277 - MLT1J2 LTR MaLR -306 103 20 718 224 153 27 chr1 208006465 208006688 -34657665 - MLT1J2 LTR MaLR 0 450 200 348 43 0 0 chr1 208006688 208006734 -34657619 + (GA)n Simple_repeat Simple_repeat 1 46 0 3845 153 11 57 chr1 208007704 208008441 -34655912 + L1MA9 LINE L1 5580 6282 -30 333 258 132 99 chr1 208008729 208008817 -34655536 - MIR SINE MIR -30 232 148 4104 62 2 0 chr1 208008817 208009313 -34655040 - L1PA7 LINE L1 -5 6149 5653 333 258 132 99 chr1 208009313 208009437 -34654916 - MIR SINE MIR -114 148 13 858 213 48 5 chr1 208009551 208009739 -34654614 - MIR SINE MIR 0 262 67 204 125 0 0 chr1 208010326 208010358 -34653995 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 366 302 196 6 chr1 208011002 208011181 -34653172 - MIR SINE MIR -48 214 2 297 198 259 9 chr1 208011204 208011320 -34653033 + L1ME4a LINE L1 5971 6115 -6 509 234 23 3 chr1 208011843 208011973 -34652380 + MIR SINE MIR 16 143 -65 186 43 0 0 chr1 208013608 208013631 -34650722 + (CAA)n Simple_repeat Simple_repeat 2 24 0 206 219 0 0 chr1 208014040 208014081 -34650272 + GA-rich Low_complexity Low_complexity 2 42 0 1019 78 0 35 chr1 208015386 208015528 -34648825 + AluSg/x SINE Alu 168 304 -8 273 321 25 0 chr1 208016091 208016172 -34648181 - L2 LINE L2 0 3313 3231 * 534 270 137 28 chr1 208016164 208016412 -34647941 + L2 LINE L2 3037 3311 -2 381 313 110 59 chr1 208016492 208016816 -34647537 - L2 LINE L2 -194 3078 2715 235 260 21 73 chr1 208017316 208017412 -34646941 + L2 LINE L2 3219 3309 -4 642 254 12 30 chr1 208017459 208017624 -34646729 - MIR SINE MIR -11 251 90 1882 92 7 57 chr1 208017998 208018279 -34646074 - AluSx SINE Alu -22 290 24 23 0 0 0 chr1 208020162 208020185 -34644168 + AT_rich Low_complexity Low_complexity 1 23 0 228 135 0 0 chr1 208020228 208020265 -34644088 + (A)n Simple_repeat Simple_repeat 1 37 0 309 26 0 0 chr1 208020600 208020638 -34643715 + (CA)n Simple_repeat Simple_repeat 2 39 0 453 300 6 17 chr1 208021798 208021978 -34642375 + A-rich Low_complexity Low_complexity 3 180 0 424 284 108 0 chr1 208022739 208022887 -34641466 + MIR SINE MIR 23 186 -76 244 265 86 25 chr1 208022901 208023063 -34641290 + MER104 DNA Tc2 4 175 -5 386 268 52 74 chr1 208025551 208025775 -34638578 - MIR SINE MIR -33 229 8 215 209 163 23 chr1 208025741 208025802 -34638551 + MER5A DNA MER1_type 68 146 -43 * 288 0 0 0 chr1 208025802 208025834 -34638519 + (CAA)n Simple_repeat Simple_repeat 2 33 0 215 209 163 23 chr1 208025834 208025858 -34638495 + MER5A DNA MER1_type 146 165 -24 297 151 0 0 chr1 208028486 208028539 -34635814 + (TGG)n Simple_repeat Simple_repeat 2 54 0 210 71 0 0 chr1 208031325 208031353 -34633000 + (A)n Simple_repeat Simple_repeat 1 28 0 215 130 0 22 chr1 208031479 208031525 -34632828 + (TGGGGG)n Simple_repeat Simple_repeat 4 48 0 577 183 17 17 chr1 208031871 208032051 -34632302 + CT-rich Low_complexity Low_complexity 1 180 0 381 22 0 0 chr1 208032187 208032233 -34632120 + (GA)n Simple_repeat Simple_repeat 2 47 0 276 100 0 0 chr1 208033910 208033950 -34630403 + (A)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr1 208034407 208034430 -34629923 + (GA)n Simple_repeat Simple_repeat 2 24 0 464 32 16 0 chr1 208034436 208034498 -34629855 + (TG)n Simple_repeat Simple_repeat 1 63 0 477 0 0 0 chr1 208038527 208038580 -34625773 + (TA)n Simple_repeat Simple_repeat 2 54 0 212 271 0 0 chr1 208039197 208039256 -34625097 + T-rich Low_complexity Low_complexity 1 59 0 202 344 0 0 chr1 208043553 208043614 -34620739 + L2 LINE L2 3211 3271 -1 300 27 0 0 chr1 208043820 208043857 -34620496 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 53 0 0 chr1 208045617 208045655 -34618698 + AT_rich Low_complexity Low_complexity 1 38 0 288 77 0 0 chr1 208046166 208046205 -34618148 + (T)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr1 208047413 208047434 -34616919 + AT_rich Low_complexity Low_complexity 1 21 0 357 93 0 0 chr1 208049707 208049761 -34614592 + (TG)n Simple_repeat Simple_repeat 1 54 0 186 167 0 0 chr1 208050538 208050574 -34613779 + (TG)n Simple_repeat Simple_repeat 1 36 0 201 323 10 21 chr1 208051428 208051524 -34612829 + (CATATA)n Simple_repeat Simple_repeat 4 98 0 2248 107 0 10 chr1 208051833 208052131 -34612222 - AluSq SINE Alu -18 295 1 184 73 0 49 chr1 208052167 208052208 -34612145 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 270 0 0 0 chr1 208056915 208056945 -34607408 + (TG)n Simple_repeat Simple_repeat 2 31 0 299 186 0 17 chr1 208058307 208058366 -34605987 - MIR SINE MIR -3 259 202 187 343 37 69 chr1 208065188 208065404 -34598949 - L3 LINE CR1 -310 1267 1059 870 200 109 14 chr1 208065920 208066130 -34598223 + MIR SINE MIR 23 252 -10 1099 169 0 11 chr1 208067119 208067297 -34597056 - AluSg/x SINE Alu 0 312 137 632 234 122 0 chr1 208069167 208069355 -34594998 + MER58C DNA MER1_type 1 211 -4 244 203 51 34 chr1 208069380 208069439 -34594914 + MIR3 SINE MIR 149 208 0 2358 84 0 7 chr1 208069440 208069738 -34594615 - AluSg1 SINE Alu -13 296 1 23 0 0 0 chr1 208071631 208071654 -34592699 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr1 208074811 208074844 -34589509 + (TG)n Simple_repeat Simple_repeat 1 33 0 191 36 36 0 chr1 208076774 208076802 -34587551 + (CA)n Simple_repeat Simple_repeat 2 30 0 547 247 53 18 chr1 208076884 208077054 -34587299 + MIR SINE MIR 87 262 0 234 333 0 0 chr1 208081137 208081218 -34583135 + (TA)n Simple_repeat Simple_repeat 1 81 0 351 44 0 0 chr1 208081896 208081941 -34582412 + (CA)n Simple_repeat Simple_repeat 1 45 0 220 178 27 41 chr1 208087119 208087192 -34577161 + (TA)n Simple_repeat Simple_repeat 1 72 0 764 138 0 0 chr1 208087929 208088059 -34576294 - MER30 DNA MER1_type -100 130 1 258 258 10 10 chr1 208088371 208088468 -34575885 + L1ME LINE L1 5684 5780 -382 2156 119 0 3 chr1 208088792 208089086 -34575267 + AluSx SINE Alu 1 293 -19 321 68 0 0 chr1 208089115 208089159 -34575194 + (CA)n Simple_repeat Simple_repeat 1 44 0 7540 121 29 12 chr1 208089199 208091128 -34573225 + L1PA10 LINE L1 4217 6157 -11 21 36 0 0 chr1 208091129 208091157 -34573196 + AT_rich Low_complexity Low_complexity 1 28 0 405 284 43 19 chr1 208093435 208093597 -34570756 + MIR SINE MIR 87 252 -10 2270 88 0 16 chr1 208094596 208094902 -34569451 - AluSg SINE Alu -9 301 1 299 339 16 0 chr1 208095172 208095296 -34569057 - MIR SINE MIR 0 262 137 231 36 0 0 chr1 208095299 208095327 -34569026 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 2319 105 7 0 chr1 208095327 208095632 -34568721 - AluSp SINE Alu -4 309 3 22 35 0 0 chr1 208095905 208095934 -34568419 + AT_rich Low_complexity Low_complexity 1 29 0 272 220 0 0 chr1 208095965 208096024 -34568329 + L2 LINE L2 3255 3313 0 340 310 28 106 chr1 208096059 208096178 -34568175 + L1M4 LINE L1 4729 4856 -1290 1603 185 17 33 chr1 208096178 208096480 -34567873 + AluJo SINE Alu 1 297 -15 340 310 28 106 chr1 208096480 208096644 -34567709 + L1M4 LINE L1 4856 4990 -1156 2132 75 7 49 chr1 208097013 208097321 -34567032 + AluY SINE Alu 1 295 -16 287 239 55 85 chr1 208097335 208097405 -34566948 + L1P5 LINE L1 5319 5390 -780 2287 125 0 0 chr1 208097405 208097717 -34566636 + AluSx SINE Alu 1 312 0 287 239 55 85 chr1 208097717 208097868 -34566485 + L1P5 LINE L1 5390 5536 -634 512 233 52 47 chr1 208098157 208098173 -34566180 + MER104 DNA MER2_type 5 19 -1879 2412 81 3 0 chr1 208098173 208098469 -34565884 - AluSg SINE Alu -13 297 1 512 233 52 47 chr1 208098469 208098624 -34565729 + MER104 DNA MER2_type 19 177 -3 968 7 68 0 chr1 208099395 208099541 -34564812 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 260 299 102 8 chr1 208099561 208099688 -34564665 - L2 LINE L2 0 3272 3134 304 324 95 74 chr1 208100060 208100440 -34563913 - L2 LINE L2 -70 3243 2856 416 293 61 86 chr1 208100630 208101070 -34563283 + L2 LINE L2 2423 2851 -463 195 357 41 71 chr1 208101170 208101439 -34562914 + L2 LINE L2 2715 2975 -339 409 295 69 0 chr1 208101496 208101669 -34562684 + HAL1 LINE L1 1578 1762 -745 275 258 21 62 chr1 208101701 208101798 -34562555 + HAL1 LINE L1 1826 1918 -589 286 146 73 0 chr1 208102016 208102071 -34562282 + L1M4 LINE L1 2294 2352 -3794 304 252 122 9 chr1 208102167 208102274 -34562079 + L2 LINE L2 3193 3311 -2 213 108 0 0 chr1 208102361 208102398 -34561955 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 345 187 55 33 chr1 208102443 208102534 -34561819 + HAL1b LINE L1 750 842 -506 2497 252 92 21 chr1 208102671 208102774 -34561579 + L2 LINE L2 2151 2245 -1068 248 0 31 0 chr1 208102774 208102806 -34561547 + (TA)n Simple_repeat Simple_repeat 1 33 0 2413 67 3 25 chr1 208102806 208103122 -34561231 - AluY SINE Alu -2 309 1 2497 252 92 21 chr1 208103122 208103891 -34560462 + L2 LINE L2 2244 3085 -228 309 236 0 0 chr1 208103893 208103948 -34560405 - MIR SINE MIR -201 61 7 2285 210 102 78 chr1 208104407 208105044 -34559309 + MLT1E1 LTR MaLR 3 654 0 353 316 142 11 chr1 208105433 208105623 -34558730 + MIR SINE MIR 48 262 0 562 252 0 0 chr1 208105655 208105770 -34558583 - MLT1E1 LTR MaLR -8 646 532 210 322 11 33 chr1 208106605 208106695 -34557658 - MIR3 SINE MIR -115 93 6 956 246 0 6 chr1 208106861 208107040 -34557313 + MER45A DNA AcHobo 1 178 0 468 91 0 0 chr1 208109675 208109741 -34554612 + (TG)n Simple_repeat Simple_repeat 1 66 0 183 205 0 0 chr1 208113026 208113065 -34551288 + A-rich Low_complexity Low_complexity 1 39 0 885 102 87 0 chr1 208114777 208114904 -34549449 + MER85 DNA T2_type 1 138 -1 381 233 19 82 chr1 208115947 208116083 -34548270 + MIR SINE MIR 63 192 -61 318 26 0 0 chr1 208118349 208118388 -34545965 + (A)n Simple_repeat Simple_repeat 1 39 0 2116 68 64 4 chr1 208119822 208120102 -34544251 - AluY SINE Alu -11 300 4 2415 191 35 51 chr1 208120103 208120711 -34543642 + L1MC4 LINE L1 7445 8042 0 507 268 22 14 chr1 208120774 208120896 -34543457 + MLT1F1 LTR MaLR 1 123 -470 1609 178 37 9 chr1 208120896 208121306 -34543047 + MER6 DNA MER2_type 1 486 -379 5346 140 20 2 chr1 208121317 208121354 -34542999 - L1PA12 LINE L1 -2 6166 6131 2298 145 30 33 chr1 208121354 208121719 -34542634 + THE1B LTR MaLR 1 364 0 5346 140 20 2 chr1 208121719 208122518 -34541835 - L1PA12 LINE L1 -37 6131 5315 836 158 73 0 chr1 208122516 208122693 -34541660 + L1PA12 LINE L1 5108 5297 -849 * 2327 117 25 38 chr1 208122695 208122837 -34541516 + MER6 DNA MER2_type 478 620 -245 2219 110 3 3 chr1 208122837 208123137 -34541216 - AluSg SINE Alu -10 300 1 2327 117 25 38 chr1 208123137 208123387 -34540966 + MER6 DNA MER2_type 620 865 0 1120 208 105 98 chr1 208123391 208123799 -34540554 + MLT1F1 LTR MaLR 125 535 -32 225 0 0 0 chr1 208123799 208123824 -34540529 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1162 162 5 5 chr1 208123824 208124009 -34540344 - AluJo SINE Alu -40 272 88 682 347 21 0 chr1 208124171 208124361 -34539992 + MER91A DNA MER1_type 3 196 0 933 289 40 24 chr1 208124361 208124735 -34539618 - L1MC/D LINE L1 -1994 5814 5435 1110 291 78 16 chr1 208125199 208125636 -34538717 - LTR16B LTR ERVL 0 464 1 3294 74 23 91 chr1 208125789 208126163 -34538190 + MLT2A2 LTR ERVL 1 336 -117 423 0 0 0 chr1 208126163 208126210 -34538143 + (CA)n Simple_repeat Simple_repeat 2 48 0 3294 74 23 91 chr1 208126210 208126321 -34538032 + MLT2A2 LTR ERVL 336 453 0 201 308 0 0 chr1 208128342 208128394 -34535959 + L2 LINE L2 3213 3264 -8 2175 149 47 14 chr1 208128578 208128941 -34535412 + THE1C LTR MaLR 1 375 0 933 327 49 65 chr1 208129585 208129747 -34534606 - L3 LINE CR1 -37 1540 1377 2150 109 16 26 chr1 208129747 208130060 -34534293 + AluSg SINE Alu 1 310 0 933 327 49 65 chr1 208130060 208130502 -34533851 - L3 LINE CR1 -200 1377 946 8096 165 16 3 chr1 208130502 208132652 -34531701 - L1PA14 LINE L1 -2 6159 3988 933 327 49 65 chr1 208132652 208132722 -34531631 - L3 LINE CR1 -631 946 876 225 233 0 0 chr1 208132723 208132766 -34531587 + MIR SINE MIR 220 262 0 * 296 356 13 81 chr1 208132752 208132988 -34531365 - L3 LINE CR1 -848 729 510 1658 171 13 94 chr1 208133551 208133944 -34530409 + MLT1A1 LTR MaLR 1 361 -4 267 31 0 0 chr1 208134234 208134266 -34530087 + (CA)n Simple_repeat Simple_repeat 1 32 0 230 242 132 44 chr1 208134311 208134402 -34529951 - MIR SINE MIR -55 207 109 2035 237 47 0 chr1 208134420 208134850 -34529503 + L1PA15 LINE L1 1 450 -6337 * 17294 199 26 15 chr1 208134834 208137715 -34526638 + L1PA15 LINE L1 1392 4400 -2416 563 0 15 0 chr1 208137715 208137782 -34526571 + (TAAAA)n Simple_repeat Simple_repeat 4 71 0 17294 199 26 15 chr1 208137782 208140227 -34524126 + L1PA15 LINE L1 4400 6816 0 219 277 0 0 chr1 208140259 208140320 -34524033 - MIR SINE MIR -108 100 54 233 333 179 40 chr1 208140357 208140736 -34523617 - L3 LINE CR1 -1070 507 76 1976 116 34 3 chr1 208140777 208141069 -34523284 + AluSx SINE Alu 1 301 -11 4924 259 111 52 chr1 208141614 208142661 -34521692 - L2 LINE L2 -18 3295 2311 1738 144 96 69 chr1 208142661 208143037 -34521316 - MLT1B LTR MaLR -2 388 3 4924 259 111 52 chr1 208143037 208144281 -34520072 - L2 LINE L2 -1002 2311 865 483 296 53 6 chr1 208144479 208144648 -34519705 + MIR SINE MIR 36 212 -50 348 260 19 39 chr1 208145032 208145136 -34519217 - MIR SINE MIR -111 151 50 407 282 66 6 chr1 208145547 208145728 -34518625 - MLT1G1 LTR MaLR -9 533 342 752 237 32 87 chr1 208145798 208146095 -34518258 - MLT1G1 LTR MaLR -300 295 14 1333 244 56 3 chr1 208146095 208146382 -34517971 + AluJo SINE Alu 1 302 0 752 237 32 87 chr1 208146382 208146396 -34517957 - MLT1G1 LTR MaLR -581 14 1 579 298 154 25 chr1 208146470 208146873 -34517480 + L2 LINE L2 2818 3272 0 546 244 80 34 chr1 208147348 208147524 -34516829 + MER5A DNA MER1_type 6 189 0 227 133 22 0 chr1 208147775 208147820 -34516533 + (CA)n Simple_repeat Simple_repeat 1 46 0 522 193 55 133 chr1 208148361 208148579 -34515774 + L1ME3 LINE L1 5962 6162 0 313 318 67 28 chr1 208149834 208150013 -34514340 + MIR SINE MIR 63 248 -14 2369 94 7 0 chr1 208150052 208150361 -34513992 - AluSx SINE Alu -1 311 1 476 263 83 37 chr1 208150387 208150604 -34513749 + L2 LINE L2 3082 3308 -5 910 167 28 6 chr1 208150755 208150935 -34513418 + MER53 DNA DNA 2 185 -4 920 231 20 10 chr1 208151053 208151128 -34513225 + MER63A DNA MER1_type 1 74 -1614 1817 141 10 26 chr1 208151128 208151433 -34512920 - AluSx SINE Alu 0 312 13 920 231 20 10 chr1 208151433 208151556 -34512797 + MER63A DNA MER1_type 74 201 -9 396 0 0 0 chr1 208151965 208152009 -34512344 + (TG)n Simple_repeat Simple_repeat 1 44 0 213 287 115 16 chr1 208152408 208152530 -34511823 + MIR3 SINE MIR 65 198 -10 180 0 0 0 chr1 208152685 208152705 -34511648 + (TC)n Simple_repeat Simple_repeat 2 21 0 1086 150 143 39 chr1 208153899 208153991 -34510362 + MER33 DNA MER1_type 5 86 -2499 2258 69 0 0 chr1 208153991 208154267 -34510086 + AluY SINE Alu 21 296 -15 1086 150 143 39 chr1 208154267 208154460 -34509893 + MER33 DNA MER1_type 86 320 -4 24 32 0 0 chr1 208154658 208154689 -34509664 + AT_rich Low_complexity Low_complexity 1 31 0 1988 91 0 7 chr1 208154689 208154964 -34509389 - L1PB1 LINE L1 -5 6146 5874 319 205 80 27 chr1 208155237 208155349 -34509004 - L1ME4a LINE L1 -13 6108 5991 650 265 69 29 chr1 208155384 208155629 -34508724 - MIR SINE MIR 0 262 8 2796 248 44 75 chr1 208155774 208157227 -34507126 - L2 LINE L2 0 3313 1901 1151 289 40 49 chr1 208158652 208159392 -34504961 - L2 LINE L2 0 3313 2580 231 340 83 32 chr1 208159384 208159540 -34504813 + MER5A DNA MER1_type 25 188 -1 * 2026 178 30 181 chr1 208159549 208160447 -34503906 + LTR41 LTR ERVL 1 762 -11 528 265 61 20 chr1 208160887 208161083 -34503270 + MIR SINE MIR 4 207 -55 951 245 40 52 chr1 208161385 208161414 -34502939 - MER33 DNA MER1_type -2262 323 295 2138 124 0 0 chr1 208161414 208161722 -34502631 + AluSx SINE Alu 1 308 0 951 245 40 52 chr1 208161722 208162018 -34502335 - MER33 DNA MER1_type -2290 295 1 320 336 14 36 chr1 208162022 208162162 -34502191 - MIR3 SINE MIR -43 165 29 * 534 263 113 5 chr1 208162156 208162342 -34502011 + MIR SINE MIR 45 250 -12 602 221 58 13 chr1 208163349 208163503 -34500850 + L1PB4 LINE L1 5960 6120 -36 830 117 0 0 chr1 208164138 208164249 -34500104 + AluSg/x SINE Alu 170 280 -32 243 270 95 48 chr1 208165838 208165964 -34498389 + L2 LINE L2 3182 3313 0 529 264 17 72 chr1 208167582 208167747 -34496606 + MIR SINE MIR 38 188 -74 1792 155 38 14 chr1 208167747 208168038 -34496315 + AluJb SINE Alu 1 298 -14 529 264 17 72 chr1 208168038 208168107 -34496246 + MIR SINE MIR 188 259 -3 644 207 171 0 chr1 208168126 208168319 -34496034 - MIR SINE MIR -5 257 32 297 75 0 0 chr1 208169538 208169578 -34494775 + (ATG)n Simple_repeat Simple_repeat 1 40 0 238 200 17 17 chr1 208169617 208169677 -34494676 - MIR SINE MIR -14 248 189 1362 272 105 37 chr1 208169755 208170299 -34494054 + MLT1G1 LTR MaLR 1 581 -14 1033 258 24 57 chr1 208170364 208170662 -34493691 - MER115 DNA AcHobo -11 682 395 333 287 164 0 chr1 208170940 208171062 -34493291 - MER115 DNA AcHobo -441 252 111 572 101 0 0 chr1 208174899 208174978 -34489375 - AluS SINE Alu -222 90 12 453 280 86 30 chr1 208176011 208176243 -34488110 + MIR SINE MIR 17 261 -1 644 242 131 23 chr1 208176989 208177249 -34487104 - L1ME4a LINE L1 -4 6117 5830 224 167 0 19 chr1 208177340 208177394 -34486959 + CT-rich Low_complexity Low_complexity 2 54 0 1672 151 0 40 chr1 208177606 208177904 -34486449 + L1M3 LINE L1 5279 5564 -619 * 5424 158 12 7 chr1 208177898 208178855 -34485498 + L1P LINE L1 3765 4726 -1420 416 316 69 77 chr1 208178992 208179938 -34484415 - L1 LINE L1 -2889 3257 2320 2123 127 14 0 chr1 208180044 208180328 -34484025 - AluSx SINE Alu -24 288 1 6740 176 11 2 chr1 208180472 208181709 -34482644 + L1P LINE L1 1422 2670 -3476 7540 45 0 0 chr1 208181810 208182785 -34481568 + L1PA5 LINE L1 5180 6154 0 1172 162 32 23 chr1 208182785 208183001 -34481352 + MLT1B LTR MaLR 173 390 0 325 245 64 48 chr1 208183001 208183189 -34481164 + L1MEd LINE L1 1059 1249 -4870 7080 39 1 1 chr1 208183309 208184154 -34480199 + L1PA5 LINE L1 5306 6150 -4 225 94 0 0 chr1 208184157 208184189 -34480164 + (A)n Simple_repeat Simple_repeat 1 32 0 205 358 15 0 chr1 208184406 208184473 -34479880 - MIR SINE MIR -158 104 37 1930 179 6 3 chr1 208184573 208184930 -34479423 - L1 LINE L1 -1862 4284 3927 237 333 0 0 chr1 208185591 208185663 -34478690 + tRNA-Gly-GGA tRNA tRNA 1 72 -3 467 296 100 17 chr1 208185849 208186089 -34478264 + MIR SINE MIR 2 261 -1 2443 69 13 3 chr1 208186137 208186440 -34477913 - AluSp SINE Alu -7 306 1 1218 167 145 37 chr1 208186575 208186844 -34477509 - AluJb SINE Alu -14 298 1 43 81 0 0 chr1 208187814 208187913 -34476440 + GC_rich Low_complexity Low_complexity 1 99 0 22 0 0 0 chr1 208188033 208188055 -34476298 + GC_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr1 208188720 208188750 -34475603 + (CA)n Simple_repeat Simple_repeat 2 31 0 282 110 4 0 chr1 208190856 208190903 -34473450 + Alu SINE Alu 239 277 -25 * 728 228 53 11 chr1 208190899 208191088 -34473265 + MER21B LTR ERV1 613 809 -54 586 284 87 47 chr1 208191122 208191769 -34472584 + L1MC4a LINE L1 5356 6035 -86 5332 195 38 34 chr1 208193265 208195275 -34469078 + MER21B-int LTR ERV1 2013 4122 -69 1947 226 44 59 chr1 208195375 208195964 -34468389 + MER21B LTR ERV1 12 591 -272 602 183 40 0 chr1 208195988 208196114 -34468239 + FLAM_C SINE Alu 2 132 -1 2045 147 7 0 chr1 208196395 208196701 -34467652 + AluJb SINE Alu 1 308 -4 250 200 53 13 chr1 208198685 208198760 -34465593 + MER116 DNA Mariner 2 79 -1 668 253 20 0 chr1 208199363 208199513 -34464840 - MER21B-int LTR ERV1 -2394 1797 1645 6849 223 20 39 chr1 208199686 208199883 -34464470 - MER21B-int LTR ERV1 -2614 1577 1378 2059 119 32 69 chr1 208199883 208200260 -34464093 + THE1B LTR MaLR 1 363 -1 6849 223 20 39 chr1 208200260 208200350 -34464003 - MER21B-int LTR ERV1 -2813 1378 1288 2313 116 0 0 chr1 208200350 208200653 -34463700 - AluSx SINE Alu -9 303 1 6849 223 20 39 chr1 208200653 208201970 -34462383 - MER21B-int LTR ERV1 -2903 1288 2 2385 239 37 65 chr1 208202021 208202737 -34461616 - MER21B LTR ERV1 -51 812 117 2594 50 0 0 chr1 208202737 208203034 -34461319 + AluY SINE Alu 1 297 -14 2385 239 37 65 chr1 208203034 208203092 -34461261 - MER21B LTR ERV1 -746 117 59 287 250 130 0 chr1 208203151 208203259 -34461094 - L1 LINE L1 -863 5283 5162 867 95 0 26 chr1 208203426 208203542 -34460811 - AluSq/x SINE Alu -200 113 1 22 0 0 0 chr1 208203577 208203599 -34460754 + AT_rich Low_complexity Low_complexity 1 22 0 1237 95 6 0 chr1 208203769 208203927 -34460426 + AluSg SINE Alu 24 182 -128 300 85 0 34 chr1 208203927 208203986 -34460367 + AluSg/q SINE Alu 247 303 0 559 244 8 0 chr1 208205857 208205988 -34458365 + MER2 DNA MER2_type 33 164 -181 546 163 71 0 chr1 208209700 208209841 -34454512 - AluSc SINE Alu -4 305 155 393 263 0 45 chr1 208210348 208210481 -34453872 + L2 LINE L2 3184 3310 -3 1343 231 123 33 chr1 208211420 208211874 -34452479 + MLT1D LTR MaLR 9 503 -2 1886 165 0 3 chr1 208212025 208212322 -34452031 + AluJb SINE Alu 1 296 -16 1897 151 7 3 chr1 208212324 208212623 -34451730 + AluSc SINE Alu 1 300 -9 5765 71 63 20 chr1 208212791 208213583 -34450770 + LTR12 LTR ERV1 1 826 0 278 294 105 34 chr1 208213798 208214036 -34450317 - L2 LINE L2 -590 2724 2470 343 224 26 78 chr1 208214554 208214670 -34449683 - MIR3 SINE MIR -15 193 84 207 194 0 113 chr1 208214823 208214885 -34449468 + MIR3 SINE MIR 111 165 -43 180 152 0 0 chr1 208216529 208216562 -34447791 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2181 74 84 0 chr1 208216596 208216881 -34447472 - AluSp SINE Alu -4 309 1 1735 81 206 12 chr1 208216913 208217161 -34447192 - AluSx SINE Alu -16 296 1 2046 164 18 3 chr1 208218052 208218388 -34445965 - MER7A DNA MER2_type -5 341 3 379 285 7 36 chr1 208218408 208218545 -34445808 + MIR SINE MIR 21 153 -109 1204 161 33 40 chr1 208218556 208218830 -34445523 + AluJo SINE Alu 26 297 -15 1778 124 102 28 chr1 208218835 208219118 -34445235 + AluSx SINE Alu 1 304 -8 1097 111 136 0 chr1 208219202 208219364 -34444989 - AluSg/x SINE Alu -13 297 114 2367 99 0 3 chr1 208220754 208221066 -34443287 + AluSx SINE Alu 1 311 -1 217 262 16 0 chr1 208221219 208221280 -34443073 - MIR SINE MIR -62 146 85 216 0 0 0 chr1 208221338 208221362 -34442991 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1146 138 17 0 chr1 208221758 208221932 -34442421 - AluSc SINE Alu -1 308 132 1462 170 12 8 chr1 208221932 208222185 -34442168 - AluSx SINE Alu -11 301 48 439 264 97 0 chr1 208223196 208223340 -34441013 - MIR SINE MIR -1 261 104 1374 165 101 49 chr1 208225398 208225726 -34438627 - MER46B DNA MER2_type -12 224 5 221 269 15 0 chr1 208226068 208226135 -34438218 + MER5A DNA MER1_type 9 76 -113 229 270 40 0 chr1 208227453 208227527 -34436826 + MIR SINE MIR 78 154 -108 4239 199 52 47 chr1 208228116 208229393 -34434960 - L1MD2 LINE L1 -23 6336 4999 2272 111 0 10 chr1 208229393 208229691 -34434662 + AluSc SINE Alu 1 295 -14 4239 199 52 47 chr1 208229691 208229935 -34434418 - L1MD2 LINE L1 -1360 4999 4758 234 0 0 0 chr1 208231128 208231154 -34433199 + (T)n Simple_repeat Simple_repeat 1 26 0 796 235 48 9 chr1 208232259 208232489 -34431864 + MIR SINE MIR 2 240 -22 1788 160 36 0 chr1 208233948 208234229 -34430124 - AluSx SINE Alu -21 291 1 195 343 29 19 chr1 208234339 208234444 -34429909 + L2 LINE L2 2682 2787 -527 584 278 40 20 chr1 208234454 208234652 -34429701 + MIR SINE MIR 11 212 -50 329 383 52 19 chr1 208234725 208234994 -34429359 + L2 LINE L2 2818 3095 -177 217 295 49 0 chr1 208235057 208235118 -34429235 + L2 LINE L2 3233 3296 -17 462 189 40 23 chr1 208235383 208235496 -34428857 - MER45A DNA AcHobo -49 129 3 929 182 39 0 chr1 208235958 208236139 -34428214 - L1MA6 LINE L1 -81 6219 6032 33 0 0 0 chr1 208236143 208236176 -34428177 + AT_rich Low_complexity Low_complexity 1 33 0 538 293 35 11 chr1 208236288 208236462 -34427891 + MER5B DNA MER1_type 1 178 0 2138 126 7 0 chr1 208236467 208236769 -34427584 + AluSx SINE Alu 1 304 -8 391 290 25 25 chr1 208238509 208238671 -34425682 + L1ME3A LINE L1 6009 6170 0 4659 51 33 0 chr1 208238962 208239534 -34424819 - LTR10C LTR ERV1 0 591 1 2248 93 10 20 chr1 208240615 208240917 -34423436 + AluSp SINE Alu 1 299 -14 2316 109 0 3 chr1 208242468 208242771 -34421582 - AluSq SINE Alu -11 302 1 474 313 40 6 chr1 208243400 208243576 -34420777 - MIR3 SINE MIR -11 197 16 5459 183 34 25 chr1 208243933 208244144 -34420209 + L1MC3 LINE L1 6658 6866 -919 198 0 0 0 chr1 208244144 208244166 -34420187 + (CA)n Simple_repeat Simple_repeat 1 22 0 5459 183 34 25 chr1 208244166 208244594 -34419759 + L1MC3 LINE L1 6866 7289 -496 2281 98 3 28 chr1 208244594 208244912 -34419441 + AluSx SINE Alu 1 310 -2 5459 183 34 25 chr1 208244912 208245388 -34418965 + L1MC3 LINE L1 7289 7784 -1 3724 170 21 24 chr1 208245827 208246579 -34417774 + L1MB3 LINE L1 5433 6182 -1 562 254 168 10 chr1 208246988 208247197 -34417156 + MIR SINE MIR 1 242 -20 189 259 0 19 chr1 208247306 208247360 -34416993 - L2 LINE L2 -203 3069 3017 261 278 218 8 chr1 208247754 208247887 -34416466 - L2 LINE L2 -1 3312 3152 1971 132 29 4 chr1 208247924 208248205 -34416148 + AluSg SINE Alu 1 288 -22 353 342 111 0 chr1 208251544 208251734 -34412619 - MIR SINE MIR -1 261 51 3022 237 74 92 chr1 208252479 208254270 -34410083 + HAL1 LINE L1 7 1764 -743 584 93 21 10 chr1 208254270 208254367 -34409986 + MER4A LTR ERV1 1 98 -566 1605 105 193 77 chr1 208254367 208254729 -34409624 + MER4A LTR ERV1 261 664 0 1508 289 70 13 chr1 208254737 208255435 -34408918 + HAL1 LINE L1 1770 2507 0 340 264 27 0 chr1 208255545 208255655 -34408698 - MER112 DNA MER1_type -7 253 141 327 280 86 43 chr1 208255857 208256089 -34408264 + MLT1J LTR MaLR 237 478 -33 463 175 81 94 chr1 208256120 208256280 -34408073 - MER112 DNA MER1_type -101 159 2 294 297 85 17 chr1 208256373 208256491 -34407862 + MIR3 SINE MIR 73 198 -10 205 271 50 86 chr1 208256732 208256872 -34407481 + L3b LINE CR1 1111 1245 -338 2377 77 3 0 chr1 208256952 208257250 -34407103 - AluSp SINE Alu -14 299 1 328 236 120 42 chr1 208257440 208257681 -34406672 + MER112 DNA MER1_type 1 260 0 2174 100 0 27 chr1 208257953 208258252 -34406101 + AluSg SINE Alu 6 296 -14 27 29 0 0 chr1 208259759 208259793 -34404560 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr1 208259955 208259980 -34404373 + (T)n Simple_repeat Simple_repeat 1 25 0 353 291 17 81 chr1 208259981 208260153 -34404200 + MER5B DNA MER1_type 1 161 -17 322 286 211 23 chr1 208261083 208261216 -34403137 + MIR SINE MIR 24 181 -81 268 331 91 11 chr1 208261710 208261885 -34402468 + MIR3 SINE MIR 10 198 -10 195 100 0 0 chr1 208262172 208262202 -34402151 + (TC)n Simple_repeat Simple_repeat 1 30 0 386 254 8 16 chr1 208263062 208263184 -34401169 - MER103 DNA DNA -45 121 1 1582 166 132 3 chr1 208264324 208264650 -34399703 - MSTB LTR MaLR -58 368 1 609 229 0 0 chr1 208264995 208265113 -34399240 + MIR SINE MIR 37 154 -108 983 165 112 0 chr1 208265114 208265320 -34399033 + MER50 LTR ERV1 1 229 -505 * 1336 150 94 39 chr1 208265314 208265600 -34398753 + MER50 LTR ERV1 433 734 0 240 167 37 0 chr1 208265630 208265684 -34398669 + MIR SINE MIR 147 202 -60 297 263 140 26 chr1 208265706 208265820 -34398533 - MIR SINE MIR -70 192 66 923 102 41 186 chr1 208265845 208266140 -34398213 + L1MA7 LINE L1 6036 6287 -4 5116 196 90 61 chr1 208266199 208267757 -34396596 - Zaphod DNA AcHobo -6 4025 2407 2173 106 7 7 chr1 208267757 208268058 -34396295 - AluSg1 SINE Alu -4 305 5 5116 196 90 61 chr1 208268058 208268308 -34396045 - Zaphod DNA AcHobo -1624 2407 2166 344 244 27 158 chr1 208268326 208268662 -34395691 - MLT1I LTR MaLR -20 389 98 348 134 0 0 chr1 208270524 208270591 -34393762 - Zaphod DNA AcHobo -1868 2163 2097 1322 174 130 22 chr1 208270616 208270892 -34393461 - AluJo SINE Alu -6 306 1 278 316 0 0 chr1 208271002 208271078 -34393275 - MER5C DNA MER1_type -236 88 13 426 218 82 0 chr1 208272228 208272338 -34392015 + MER94 DNA DNA 1 119 -15 399 280 54 32 chr1 208272405 208272591 -34391762 + MLT1H LTR MaLR 79 268 -281 231 255 216 0 chr1 208272637 208272739 -34391614 + MLT1H LTR MaLR 421 544 -5 200 256 0 51 chr1 208273979 208274057 -34390296 + MIR SINE MIR 20 93 -169 1951 299 82 21 chr1 208274067 208275440 -34388913 + L1MEc LINE L1 213 1668 -4728 649 273 65 0 chr1 208275453 208275746 -34388607 + L1MEc LINE L1 1768 2079 -4317 1256 186 9 0 chr1 208275755 208275976 -34388377 + AluJb SINE Alu 86 308 -4 965 269 33 14 chr1 208275978 208276398 -34387955 + L1MEc LINE L1 2087 2514 -3882 765 335 161 18 chr1 208276435 208277043 -34387310 - L2 LINE L2 -452 2862 2168 2136 125 20 0 chr1 208277180 208277484 -34386869 - AluSg SINE Alu 0 310 1 641 279 59 21 chr1 208277494 208277834 -34386519 + L1MEc LINE L1 1316 1668 -4728 887 343 64 11 chr1 208277835 208278383 -34385970 + L1M4 LINE L1 4664 5240 -906 208 262 63 79 chr1 208278500 208278626 -34385727 + L2 LINE L2 2981 3104 -168 2119 44 0 8 chr1 208278645 208278897 -34385456 - AluY SINE Alu -60 251 2 804 296 152 28 chr1 208279126 208279515 -34384838 + L2 LINE L2 2875 3311 -2 354 271 33 166 chr1 208279766 208280164 -34384189 - L2 LINE L2 -405 2909 2565 25 0 0 0 chr1 208281463 208281488 -34382865 + AT_rich Low_complexity Low_complexity 1 25 0 218 102 17 51 chr1 208282368 208282427 -34381926 + (CA)n Simple_repeat Simple_repeat 2 58 0 377 276 13 50 chr1 208282967 208283133 -34381220 + MIR SINE MIR 33 190 -63 1043 269 87 9 chr1 208283186 208283509 -34380844 - LTR16A LTR ERVL -17 433 86 330 262 107 19 chr1 208284266 208284369 -34379984 - L2 LINE L2 0 3313 3202 2142 140 14 0 chr1 208284541 208284906 -34379447 - L1MA5 LINE L1 -5 6295 5926 312 299 21 42 chr1 208285113 208285257 -34379096 - MIR SINE MIR -46 216 76 1649 168 3 91 chr1 208286128 208286467 -34377886 + AluJo SINE Alu 1 309 -3 661 117 0 0 chr1 208286813 208286916 -34377437 + L1MB2 LINE L1 6064 6166 -5 1811 161 7 17 chr1 208289640 208289938 -34374415 + AluJb SINE Alu 1 295 -17 2252 188 14 50 chr1 208289990 208290548 -34373805 + MER67A LTR ERV1 6 543 0 2520 67 0 6 chr1 208291455 208291767 -34372586 + AluY SINE Alu 1 310 -1 186 43 0 0 chr1 208292222 208292245 -34372108 + (TAA)n Simple_repeat Simple_repeat 1 23 0 475 302 109 5 chr1 208292246 208292438 -34371915 - MIR SINE MIR -2 260 49 1768 174 0 3 chr1 208292456 208292743 -34371610 + AluJb SINE Alu 19 304 -8 1507 150 7 46 chr1 208293540 208293820 -34370533 + AluJo SINE Alu 39 307 -5 882 230 60 0 chr1 208293852 208294052 -34370301 + Tigger7 DNA MER2_type 42 253 -480 182 146 195 0 chr1 208294632 208294673 -34369680 - L2 LINE L2 -16 3256 3208 1407 148 4 37 chr1 208295217 208295461 -34368892 + MER46A DNA MER2_type 1 236 0 321 293 53 27 chr1 208295683 208295833 -34368520 + MIR SINE MIR 20 173 -89 4696 153 40 14 chr1 208295872 208296816 -34367537 + L1MA7 LINE L1 5321 6289 -2 417 296 28 51 chr1 208297071 208297247 -34367106 + MER5B DNA MER1_type 2 173 -5 2487 124 3 3 chr1 208298339 208298703 -34365650 - THE1B LTR MaLR 0 364 1 401 274 171 0 chr1 208298745 208298862 -34365491 + L2 LINE L2 3136 3272 0 294 279 196 12 chr1 208300334 208300479 -34363874 + MIR SINE MIR 17 187 -75 218 267 80 13 chr1 208300510 208300585 -34363768 + MIR3 SINE MIR 121 200 -8 1858 153 0 35 chr1 208300759 208301073 -34363280 - AluJo SINE Alu -9 303 1 852 280 127 42 chr1 208301220 208301623 -34362730 + MLT1J2 LTR MaLR 11 447 -3 201 74 0 0 chr1 208302430 208302457 -34361896 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 679 252 7 0 chr1 208302617 208302764 -34361589 - MER69 DNA AcHobo -1077 149 2 24 0 0 0 chr1 208304825 208304849 -34359504 + AT_rich Low_complexity Low_complexity 1 24 0 211 363 62 0 chr1 208305164 208305244 -34359109 + L2 LINE L2 3146 3230 -42 222 191 0 0 chr1 208305244 208305291 -34359062 + (ATGGTG)n Simple_repeat Simple_repeat 1 47 0 307 213 0 38 chr1 208305291 208305371 -34358982 - MIR SINE MIR -1 261 185 226 140 18 35 chr1 208305382 208305439 -34358914 + (TA)n Simple_repeat Simple_repeat 1 56 0 554 166 17 154 chr1 208305439 208305634 -34358719 - MIR SINE MIR -57 205 40 327 314 155 5 chr1 208305914 208306108 -34358245 - MIR SINE MIR -38 224 2 207 327 227 0 chr1 208307062 208307172 -34357181 + L2 LINE L2 3127 3261 -11 181 232 24 85 chr1 208307774 208307856 -34356497 + MIR SINE MIR 125 201 -61 * 208 327 40 79 chr1 208307850 208308052 -34356301 - L2 LINE L2 0 3272 3079 611 332 26 4 chr1 208308258 208308484 -34355869 - MIR SINE MIR 0 262 32 468 0 0 0 chr1 208308760 208308812 -34355541 + (CA)n Simple_repeat Simple_repeat 1 52 0 263 222 67 113 chr1 208309451 208309785 -34354568 + L1P5 LINE L1 5111 5431 -723 591 286 80 37 chr1 208309917 208310266 -34354087 + L2 LINE L2 2141 2504 -810 492 278 194 7 chr1 208310287 208310560 -34353793 + L2 LINE L2 2990 3313 0 348 232 144 8 chr1 208310661 208310786 -34353567 + MIR SINE MIR 118 259 -3 347 248 18 9 chr1 208310805 208310914 -34353439 + L1MC4a LINE L1 5804 5913 -1895 397 279 29 0 chr1 208311503 208311607 -34352746 - L2 LINE L2 -2 3311 3205 198 0 0 0 chr1 208312640 208312662 -34351691 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 850 149 8 8 chr1 208312813 208312947 -34351406 - AluJo SINE Alu -178 134 1 22 0 0 0 chr1 208313097 208313119 -34351234 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr1 208313978 208314003 -34350350 + (TA)n Simple_repeat Simple_repeat 1 25 0 3146 226 142 26 chr1 208314076 208315171 -34349182 + HAL1 LINE L1 1280 2500 -7 737 206 162 31 chr1 208315256 208315484 -34348869 + MIR SINE MIR 5 262 0 353 198 10 79 chr1 208315554 208315655 -34348698 + L2 LINE L2 3179 3272 0 298 153 69 42 chr1 208315783 208315855 -34348498 + MLT1J LTR MaLR 42 115 -396 2371 101 0 0 chr1 208315879 208316186 -34348167 - AluY SINE Alu -4 307 1 2131 125 0 0 chr1 208316574 208316855 -34347498 + AluSp SINE Alu 16 296 -17 550 286 108 9 chr1 208317243 208317474 -34346879 - Charlie8 DNA MER1_type -2153 264 11 480 282 57 53 chr1 208317523 208317595 -34346758 - MIR SINE MIR -6 256 186 935 94 78 0 chr1 208317595 208317723 -34346630 - MER85 DNA T2_type -1 138 1 480 282 57 53 chr1 208317723 208317895 -34346458 - MIR SINE MIR -76 186 11 384 158 121 127 chr1 208317920 208318033 -34346320 + MER5B DNA MER1_type 1 114 -64 1782 160 17 3 chr1 208318033 208318327 -34346026 - AluJb SINE Alu -13 299 2 384 158 121 127 chr1 208318327 208318378 -34345975 + MER5B DNA MER1_type 114 164 -14 437 193 160 100 chr1 208318390 208318430 -34345923 + MER5A DNA MER1_type 31 67 -122 2187 136 7 0 chr1 208318430 208318740 -34345613 + AluSx SINE Alu 1 312 0 437 193 160 100 chr1 208318740 208318849 -34345504 + MER5A DNA MER1_type 67 189 0 2234 80 47 0 chr1 208320331 208320630 -34343723 + AluSp SINE Alu 1 313 0 1973 167 0 0 chr1 208320795 208321088 -34343265 + AluJo SINE Alu 1 293 -19 508 173 0 0 chr1 208321294 208321375 -34342978 - Tigger5 DNA MER2_type -1 2322 2242 362 183 42 14 chr1 208321365 208321436 -34342917 + Tigger5 DNA MER2_type 2242 2314 -9 * 449 200 0 0 chr1 208321435 208321510 -34342843 - Tigger5 DNA MER2_type -2248 75 1 520 265 48 72 chr1 208321611 208321902 -34342451 - HAL1 LINE L1 -1189 1318 1035 207 265 96 84 chr1 208322268 208322434 -34341919 + MIR SINE MIR 32 199 -63 227 143 20 20 chr1 208322723 208322772 -34341581 + GA-rich Low_complexity Low_complexity 5 53 0 362 245 19 88 chr1 208322841 208323000 -34341353 - MER57A LTR ERV1 -4 399 252 * 1241 151 66 8 chr1 208322983 208323280 -34341073 - LTR54 LTR ERV1 -135 375 1 466 268 49 18 chr1 208323285 208323449 -34340904 + MIR SINE MIR 82 250 -12 275 298 87 19 chr1 208323891 208323995 -34340358 - L2 LINE L2 -11 3261 3151 364 298 66 33 chr1 208325197 208325378 -34338975 + MIR SINE MIR 74 260 -2 240 250 25 25 chr1 208325390 208325470 -34338883 - MIR SINE MIR -109 99 20 417 353 44 42 chr1 208325850 208326194 -34338159 + L2 LINE L2 2722 3064 -208 401 276 89 33 chr1 208326314 208326498 -34337855 + MIR3 SINE MIR 7 199 -9 23 54 0 0 chr1 208326615 208326652 -34337701 + AT_rich Low_complexity Low_complexity 1 37 0 2209 103 0 0 chr1 208326766 208327057 -34337296 + AluY SINE Alu 1 291 -20 1639 165 109 72 chr1 208327762 208328138 -34336215 + MLT1B LTR MaLR 1 390 0 1954 142 29 6 chr1 208329594 208329910 -34334443 - L1MB1 LINE L1 -1 6167 5845 22 0 0 0 chr1 208330320 208330342 -34334011 + AT_rich Low_complexity Low_complexity 1 22 0 594 219 0 55 chr1 208330576 208330704 -34333649 + FLAM_A SINE Alu 1 121 -12 374 264 230 0 chr1 208331151 208331325 -34333028 - MIR SINE MIR 0 262 49 802 211 47 6 chr1 208331355 208331526 -34332827 + Charlie1 DNA MER1_type 56 233 -2528 261 215 0 0 chr1 208331515 208331580 -34332773 + Charlie1 DNA MER1_type 2619 2683 -78 * 1978 158 21 13 chr1 208331580 208331960 -34332393 - L1PA13 LINE L1 -813 5333 4951 5383 111 8 12 chr1 208331970 208332775 -34331578 + L1PA13 LINE L1 5356 6156 -7 436 66 0 105 chr1 208332825 208332901 -34331452 + L1PA8 LINE L1 6096 6163 -9 1343 183 0 4 chr1 208333168 208333397 -34330956 - AluSx SINE Alu -13 297 70 486 111 14 14 chr1 208333454 208333526 -34330827 - AluSx SINE Alu -236 77 6 316 119 34 34 chr1 208333527 208333586 -34330767 + Charlie1 DNA MER1_type 2701 2759 -2 2068 116 13 3 chr1 208333673 208333976 -34330377 + AluSq SINE Alu 1 306 -7 400 208 143 131 chr1 208334221 208334466 -34329887 + MIR SINE MIR 15 262 0 215 318 100 9 chr1 208334747 208334857 -34329496 + MIR3 SINE MIR 84 203 -5 285 244 9 26 chr1 208335641 208335756 -34328597 + (TA)n Simple_repeat Simple_repeat 2 114 0 203 171 0 0 chr1 208336008 208336043 -34328310 + (CAT)n Simple_repeat Simple_repeat 1 35 0 2628 134 86 0 chr1 208336757 208337151 -34327202 + MSTA LTR MaLR 1 428 0 369 261 35 118 chr1 208337471 208337674 -34326679 - MER5A DNA MER1_type -3 186 1 1792 103 43 4 chr1 208337693 208337970 -34326383 - AluSx SINE Alu 0 307 21 309 26 0 0 chr1 208338099 208338137 -34326216 + (TG)n Simple_repeat Simple_repeat 2 39 0 358 215 25 0 chr1 208338637 208338716 -34325637 + L2 LINE L2 3233 3313 0 1949 118 3 3 chr1 208338800 208339087 -34325266 - AluSc SINE Alu -22 287 1 330 87 0 0 chr1 208339571 208339617 -34324736 + (CA)n Simple_repeat Simple_repeat 2 47 0 2038 122 31 0 chr1 208339788 208340082 -34324271 - AluSx SINE Alu -9 303 1 3242 82 18 38 chr1 208340718 208341171 -34323182 - MLT2A1 LTR ERVL 0 444 1 222 208 0 0 chr1 208341178 208341226 -34323127 + T-rich Low_complexity Low_complexity 1 48 0 202 238 0 0 chr1 208341365 208341407 -34322946 - L3 LINE CR1 -7 1570 1529 213 239 120 22 chr1 208341434 208341526 -34322827 - MER5A DNA MER1_type -63 126 26 225 293 13 13 chr1 208341537 208341612 -34322741 - MIR3 SINE MIR -48 160 86 239 347 61 0 chr1 208341643 208341741 -34322612 - L2 LINE L2 -1 3271 3168 204 289 13 92 chr1 208345903 208345979 -34318374 - MER5B DNA MER1_type -108 70 1 430 288 159 12 chr1 208346909 208347079 -34317274 - MIR3 SINE MIR -11 197 3 320 283 136 20 chr1 208347680 208347931 -34316422 - HAL1 LINE L1 -7 2500 2221 1320 182 96 28 chr1 208347970 208348261 -34316092 - MER2 DNA MER2_type -25 320 10 331 230 90 0 chr1 208348321 208348421 -34315932 - HAL1 LINE L1 -292 2215 2107 2231 253 77 15 chr1 208348433 208349110 -34315243 + HsTC2c DNA Tc2 11 729 0 262 103 0 0 chr1 208349113 208349152 -34315201 - U2 snRNA snRNA -149 39 1 370 269 55 0 chr1 208349155 208349300 -34315053 - HAL1 LINE L1 -402 2105 1953 2102 246 104 19 chr1 208349340 208350077 -34314276 - HAL1 LINE L1 -630 1877 1078 1444 126 0 10 chr1 208350080 208350286 -34314067 - AluJb SINE Alu -24 288 85 2623 253 88 43 chr1 208350287 208350520 -34313833 - HAL1 LINE L1 -1420 1087 866 2192 120 0 7 chr1 208350520 208350820 -34313533 - AluSg SINE Alu -12 298 1 2623 253 88 43 chr1 208350820 208350928 -34313425 - HAL1 LINE L1 -1641 866 764 2360 107 0 3 chr1 208350928 208351238 -34313115 - AluSx SINE Alu -3 309 1 2623 253 88 43 chr1 208351238 208351933 -34312420 - HAL1 LINE L1 -1743 764 4 279 0 0 0 chr1 208353175 208353206 -34311147 + (TG)n Simple_repeat Simple_repeat 2 32 0 2779 234 107 21 chr1 208353725 208354785 -34309568 + L2 LINE L2 2131 3295 -18 1136 256 70 29 chr1 208355164 208355649 -34308704 - L1MC4 LINE L1 0 8042 7538 568 293 133 9 chr1 208355742 208355967 -34308386 + MIR SINE MIR 4 256 -6 1046 232 8 38 chr1 208356917 208357184 -34307169 + MIR SINE MIR 3 261 -1 453 198 0 21 chr1 208358190 208358286 -34306067 + MIR SINE MIR 6 99 -163 346 240 57 80 chr1 208358506 208358681 -34305672 + LTR16A1 LTR ERVL 277 447 -10 250 238 95 48 chr1 208358686 208358791 -34305562 + MIR SINE MIR 153 262 0 21 0 0 0 chr1 208359100 208359121 -34305232 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 208359901 208359931 -34304422 + AT_rich Low_complexity Low_complexity 1 30 0 334 259 0 12 chr1 208360612 208360693 -34303660 + MER103 DNA DNA 2 81 -85 858 118 7 29 chr1 208360693 208360829 -34303524 + FLAM_C SINE Alu 1 133 0 317 267 129 42 chr1 208360989 208361146 -34303207 + L1ME4a LINE L1 5665 5807 -314 2236 100 0 0 chr1 208361146 208361454 -34302899 - AluSc SINE Alu 0 308 1 317 267 129 42 chr1 208361454 208361699 -34302654 + L1ME4a LINE L1 5807 6103 -18 2155 114 7 0 chr1 208361741 208362031 -34302322 + AluSx SINE Alu 1 292 -20 603 261 111 33 chr1 208362645 208362978 -34301375 + L1ME4a LINE L1 5594 5952 -169 2292 102 0 0 chr1 208363633 208363937 -34300416 + AluSq SINE Alu 1 304 -9 416 213 43 0 chr1 208364351 208364445 -34299908 + MER113 DNA MER1_type? 5 102 -419 582 183 67 8 chr1 208364816 208364936 -34299417 - L2 LINE L2 0 3313 3187 1830 90 0 0 chr1 208365146 208365391 -34298962 - L1PA14 LINE L1 -3 6158 5914 22 0 0 0 chr1 208367268 208367290 -34297063 + AT_rich Low_complexity Low_complexity 1 22 0 895 176 14 0 chr1 208367294 208367442 -34296911 - FRAM SINE Alu -24 152 3 291 128 0 0 chr1 208367553 208367600 -34296753 + MIR SINE MIR 107 153 -109 288 234 276 7 chr1 208367613 208367758 -34296595 + MIR SINE MIR 79 262 0 2244 94 3 3 chr1 208367760 208368057 -34296296 - AluSq SINE Alu -16 297 1 2362 73 0 35 chr1 208368223 208368536 -34295817 - AluSg SINE Alu -8 302 1 1847 174 0 3 chr1 208368547 208368834 -34295519 - AluJo SINE Alu -26 286 1 600 299 25 25 chr1 208369676 208369805 -34294548 + MIR SINE MIR 17 148 -114 2227 116 137 13 chr1 208369805 208370186 -34294167 + MSTA LTR MaLR 1 428 0 600 299 25 25 chr1 208370186 208370300 -34294053 + MIR SINE MIR 147 260 -2 232 271 0 0 chr1 208370321 208370391 -34293962 + (CCA)n Simple_repeat Simple_repeat 2 71 0 794 171 0 0 chr1 208371747 208371876 -34292477 + FLAM_C SINE Alu 14 142 -1 272 352 8 31 chr1 208372601 208372729 -34291624 + MIR SINE MIR 30 154 -108 435 19 0 0 chr1 208373776 208373828 -34290525 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 57 0 0 chr1 208373949 208373984 -34290369 + AT_rich Low_complexity Low_complexity 1 35 0 238 281 0 11 chr1 208374777 208374866 -34289487 + (CTA)n Simple_repeat Simple_repeat 1 88 0 2101 110 0 47 chr1 208374904 208375222 -34289131 + AluSq SINE Alu 1 303 -10 2231 51 84 4 chr1 208375746 208376021 -34288332 + AluY SINE Alu 1 297 -14 246 359 38 9 chr1 208376831 208376937 -34287416 + L2 LINE L2 3136 3244 -28 1973 116 33 0 chr1 208377505 208377780 -34286573 - AluSq SINE Alu -29 284 1 1863 153 14 36 chr1 208377804 208377980 -34286373 - L1MB3 LINE L1 0 6183 6018 2135 131 3 0 chr1 208377980 208378270 -34286083 + AluSx SINE Alu 1 291 -21 1863 153 14 36 chr1 208378270 208378458 -34285895 - L1MB3 LINE L1 -165 6018 5827 245 304 159 48 chr1 208379214 208379278 -34285075 - L2 LINE L2 -357 2957 2901 2341 87 0 7 chr1 208379278 208379588 -34284765 + AluY SINE Alu 1 308 -3 245 304 159 48 chr1 208379588 208379730 -34284623 - L2 LINE L2 -413 2901 2728 234 200 158 50 chr1 208380465 208380585 -34283768 + L2 LINE L2 2989 3121 -192 368 290 65 7 chr1 208380824 208380962 -34283391 + L2 LINE L2 3119 3264 -49 2056 129 3 0 chr1 208382390 208382676 -34281677 - AluSx SINE Alu -25 287 1 490 246 37 42 chr1 208382758 208382881 -34281472 + MER112 DNA MER1_type 65 188 -72 414 0 0 0 chr1 208382881 208382927 -34281426 + (CA)n Simple_repeat Simple_repeat 2 47 0 490 246 37 42 chr1 208382927 208382994 -34281359 + MER112 DNA MER1_type 188 254 -6 2510 58 0 10 chr1 208386481 208386791 -34277562 - AluY SINE Alu -4 307 1 606 224 146 0 chr1 208387240 208387405 -34276948 + MIR SINE MIR 63 251 -11 233 259 106 0 chr1 208390043 208390128 -34274225 - MER5A DNA MER1_type -6 183 90 314 305 68 8 chr1 208391340 208391458 -34272895 - L3 LINE CR1 -178 1399 1275 455 293 84 5 chr1 208391472 208391687 -34272666 + MIR SINE MIR 5 236 -26 21 0 0 0 chr1 208395113 208395134 -34269219 + AT_rich Low_complexity Low_complexity 1 21 0 233 224 0 0 chr1 208396122 208396171 -34268182 + MIR SINE MIR 103 151 -111 2420 75 3 0 chr1 208396991 208397284 -34267069 - AluSg SINE Alu -11 299 6 21 0 0 0 chr1 208397448 208397469 -34266884 + AT_rich Low_complexity Low_complexity 1 21 0 282 327 4 0 chr1 208399135 208399221 -34265132 + MIR SINE MIR 34 120 -103 2246 93 0 30 chr1 208399241 208399541 -34264812 + AluSp SINE Alu 1 291 -22 2130 104 10 30 chr1 208399741 208400038 -34264315 + AluSx SINE Alu 5 295 -17 181 296 19 0 chr1 208400149 208400203 -34264150 - L2 LINE L2 0 3272 3218 281 271 161 8 chr1 208400301 208400419 -34263934 - MIR3 SINE MIR -14 194 59 553 263 55 71 chr1 208400549 208400804 -34263549 - MIR SINE MIR -6 256 6 207 162 0 0 chr1 208402190 208402227 -34262126 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 1097 165 0 0 chr1 208402838 208403008 -34261345 - AluJo SINE Alu -18 294 125 458 271 52 0 chr1 208403222 208403377 -34260976 - L1ME4a LINE L1 -233 5888 5726 185 191 0 21 chr1 208403379 208403426 -34260927 + CT-rich Low_complexity Low_complexity 2 47 0 542 197 28 10 chr1 208403427 208403556 -34260797 - L1ME4a LINE L1 -394 5727 5606 193 164 36 91 chr1 208404526 208404581 -34259772 + MIR3 SINE MIR 150 201 -7 2635 71 0 3 chr1 208404843 208405183 -34259170 + L1PA14 LINE L1 5822 6160 -1 288 256 35 0 chr1 208405277 208405363 -34258990 - MIR3 SINE MIR -53 155 67 185 0 0 39 chr1 208406019 208406045 -34258308 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 605 75 53 11 chr1 208407181 208407275 -34257078 + MER4A LTR ERV1 1 98 -566 1617 112 51 80 chr1 208407275 208407631 -34256722 + MER4A LTR ERV1 261 664 0 21 0 0 0 chr1 208408051 208408072 -34256281 + AT_rich Low_complexity Low_complexity 1 21 0 2179 105 10 0 chr1 208409545 208409839 -34254514 - AluSg SINE Alu -13 297 1 1302 222 0 43 chr1 208409968 208410270 -34254083 - AluJo SINE Alu -23 289 1 231 146 0 0 chr1 208410332 208410373 -34253980 + (TATG)n Simple_repeat Simple_repeat 4 44 0 823 99 18 0 chr1 208411955 208412066 -34252287 - AluSq/x SINE Alu -199 113 1 2356 107 0 0 chr1 208412242 208412550 -34251803 + AluSx SINE Alu 1 308 -4 193 269 15 15 chr1 208413233 208413300 -34251053 - MIR SINE MIR -113 149 83 226 216 98 0 chr1 208414928 208414979 -34249374 - tRNA-Ile-ATT tRNA tRNA -5 72 17 1092 169 100 41 chr1 208416302 208416668 -34247685 + MER39 LTR ERV1 1 707 0 207 0 0 0 chr1 208416874 208416897 -34247456 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr1 208417032 208417060 -34247293 + (GA)n Simple_repeat Simple_repeat 1 28 0 192 340 82 10 chr1 208417422 208417519 -34246834 + L2 LINE L2 3161 3264 -8 2095 124 0 10 chr1 208417934 208417946 -34246407 - AluSx SINE Alu -17 295 284 354 23 0 0 chr1 208417946 208417989 -34246364 + (TG)n Simple_repeat Simple_repeat 2 44 0 2095 124 0 10 chr1 208417989 208418274 -34246079 - AluSx SINE Alu -28 284 1 194 229 43 43 chr1 208418362 208418432 -34245921 - L2 LINE L2 -17 3255 3186 2322 80 3 0 chr1 208418608 208418897 -34245456 - AluSp SINE Alu -23 290 1 23 33 0 0 chr1 208418901 208418931 -34245422 + AT_rich Low_complexity Low_complexity 1 30 0 2113 119 3 13 chr1 208419307 208419610 -34244743 + AluSx SINE Alu 1 300 -12 691 278 21 5 chr1 208421497 208421691 -34242662 - MIR SINE MIR 0 262 66 295 192 27 14 chr1 208422058 208422131 -34242222 + MER5B DNA MER1_type 22 95 -83 4142 194 77 4 chr1 208422780 208423751 -34240602 + L1P4 LINE L1 4442 5458 -708 1653 180 0 56 chr1 208426656 208426979 -34237374 - AluJo SINE Alu -7 305 1 1863 160 110 36 chr1 208427230 208427648 -34236705 + LTR47A LTR ERVL 4 452 0 260 233 0 56 chr1 208427714 208427804 -34236549 + CT-rich Low_complexity Low_complexity 2 86 0 2437 92 0 0 chr1 208428968 208429271 -34235082 - AluSc SINE Alu -6 303 1 391 259 91 16 chr1 208429370 208429688 -34234665 - L2 LINE L2 -1239 2075 1657 1196 256 92 18 chr1 208429730 208429786 -34234567 + L2 LINE L2 2379 2429 -884 1766 152 0 0 chr1 208429786 208430043 -34234310 + AluSx SINE Alu 41 297 -15 1196 256 92 18 chr1 208430043 208430858 -34233495 + L2 LINE L2 2429 3312 -1 37 23 0 0 chr1 208431415 208431459 -34232894 + AT_rich Low_complexity Low_complexity 1 44 0 289 269 52 30 chr1 208431571 208431705 -34232648 + MIR3 SINE MIR 4 140 -68 207 192 58 0 chr1 208431875 208431927 -34232426 + MIR SINE MIR 205 259 -3 207 0 0 0 chr1 208431929 208431952 -34232401 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 28 0 0 0 chr1 208432639 208432667 -34231686 + AT_rich Low_complexity Low_complexity 1 28 0 195 283 104 28 chr1 208434336 208434442 -34229911 + MIR3 SINE MIR 55 168 -40 270 204 40 132 chr1 208435899 208435969 -34228384 - MIR SINE MIR -72 136 113 2352 87 3 7 chr1 208435969 208436269 -34228084 - AluSq SINE Alu -14 299 1 270 204 40 132 chr1 208436269 208436351 -34228002 - MIR SINE MIR -95 113 25 299 219 0 16 chr1 208437113 208437177 -34227176 - MER103 DNA DNA -50 116 54 2055 133 7 3 chr1 208438836 208439137 -34225216 - AluJb SINE Alu -6 306 5 5004 208 71 36 chr1 208440854 208441063 -34223290 + Charlie1a DNA MER1_type 1 201 -2560 2155 122 10 0 chr1 208441063 208441357 -34222996 - AluSx SINE Alu -15 297 1 5004 208 71 36 chr1 208441357 208442552 -34221801 + Charlie1a DNA MER1_type 201 1455 0 285 321 22 22 chr1 208442558 208442695 -34221658 - MIR SINE MIR -74 188 52 4867 111 32 29 chr1 208443280 208443509 -34220844 - L1PA16 LINE L1 -9 6157 5930 2162 105 14 0 chr1 208443509 208443804 -34220549 + AluY SINE Alu 1 299 -12 4867 111 32 29 chr1 208443804 208444229 -34220124 - L1PA16 LINE L1 -236 5930 5498 1770 144 13 43 chr1 208444229 208444534 -34219819 - AluJo SINE Alu -16 296 1 4867 111 32 29 chr1 208444534 208444634 -34219719 - L1PA16 LINE L1 -668 5498 5400 3884 77 13 9 chr1 208544634 208545168 -34119185 + THE1A-int LTR MaLR 1045 1580 0 2480 96 8 8 chr1 208545168 208545523 -34118830 + THE1A LTR MaLR 1 355 0 24 53 0 0 chr1 208545841 208545879 -34118474 + GC_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr1 208546458 208546480 -34117873 + GC_rich Low_complexity Low_complexity 1 22 0 442 260 219 11 chr1 208547195 208547405 -34116948 - MIR SINE MIR -3 259 14 2241 97 4 0 chr1 208547550 208547868 -34116485 + AluSp SINE Alu 5 323 0 2306 107 22 22 chr1 208548148 208548503 -34115850 + THE1A LTR MaLR 1 355 0 6298 113 24 2 chr1 208548503 208549431 -34114922 + THE1A-int LTR MaLR 1 948 -632 211 205 0 0 chr1 208550065 208550104 -34114249 + CT-rich Low_complexity Low_complexity 2 40 0 441 0 0 0 chr1 208550104 208550153 -34114200 + (CA)n Simple_repeat Simple_repeat 1 49 0 238 238 0 32 chr1 208550399 208550462 -34113891 + CT-rich Low_complexity Low_complexity 2 62 0 24 53 0 0 chr1 208552073 208552111 -34112242 + GC_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr1 208552314 208552346 -34112007 + GC_rich Low_complexity Low_complexity 1 32 0 9832 132 38 15 chr1 208552815 208553256 -34111097 - L1PA14 LINE L1 0 6161 5732 918 126 0 15 chr1 208553256 208553391 -34110962 - FLAM_C SINE Alu 0 133 1 9832 132 38 15 chr1 208553391 208554600 -34109753 - L1PA14 LINE L1 -429 5732 4434 2448 77 0 3 chr1 208554600 208554898 -34109455 - AluSq SINE Alu -16 297 1 9832 132 38 15 chr1 208554898 208555742 -34108611 - L1PA14 LINE L1 -1727 4434 3611 218 313 38 12 chr1 208558431 208558511 -34105842 - L2 LINE L2 0 3313 3232 259 252 93 0 chr1 208558682 208558789 -34105564 - L2 LINE L2 -2009 1305 1189 1882 103 0 0 chr1 208558813 208559056 -34105297 + AluSq SINE Alu 1 243 -70 243 185 185 0 chr1 208559224 208559289 -34105064 - MER116 DNA Mariner -2 78 2 995 215 66 12 chr1 208559554 208559796 -34104557 + MER33 DNA MER1_type 1 255 -69 943 59 15 0 chr1 208559938 208560073 -34104280 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 383 130 0 14 chr1 208560075 208560144 -34104209 + (TCCC)n Simple_repeat Simple_repeat 4 71 0 2088 117 19 16 chr1 208560144 208560487 -34103866 - AluSx SINE Alu 0 345 2 2384 100 40 53 chr1 208561041 208561421 -34102932 - THE1C LTR MaLR 0 375 1 194 224 20 41 chr1 208561538 208561587 -34102766 + L2 LINE L2 3224 3271 -1 28 29 0 0 chr1 208566418 208566453 -34097900 + AT_rich Low_complexity Low_complexity 1 35 0 509 263 34 0 chr1 208566459 208566577 -34097776 + MIR SINE MIR 50 171 -91 824 156 7 22 chr1 208567932 208568067 -34096286 + FLAM_C SINE Alu 1 133 0 181 268 37 61 chr1 208568226 208568308 -34096045 - MIR3 SINE MIR -29 179 100 201 264 111 0 chr1 208569116 208569188 -34095165 - MIR SINE MIR -82 180 101 220 250 18 18 chr1 208570129 208570185 -34094168 - L2 LINE L2 0 3313 3258 432 329 154 31 chr1 208570510 208571242 -34093111 + L2 LINE L2 1002 1823 -1491 2211 111 3 0 chr1 208571420 208571718 -34092635 - AluSx SINE Alu -13 299 1 2231 87 11 0 chr1 208571733 208572019 -34092334 - AluSc SINE Alu -20 289 1 25 31 0 0 chr1 208572495 208572527 -34091826 + AT_rich Low_complexity Low_complexity 1 32 0 225 0 0 0 chr1 208572640 208572665 -34091688 + (TG)n Simple_repeat Simple_repeat 2 26 0 2279 98 0 0 chr1 208572665 208572950 -34091403 - AluSx SINE Alu -27 285 1 2014 154 0 0 chr1 208573087 208573380 -34090973 - AluJb SINE Alu -19 293 1 1923 210 56 19 chr1 208573392 208573907 -34090446 + MER114 LTR ERV 15 548 -100 641 246 15 0 chr1 208573915 208574045 -34090308 - FLAM_A SINE Alu -10 132 1 1878 159 190 38 chr1 208575253 208575675 -34088678 - MER66B LTR ERV1 0 486 1 4677 136 20 24 chr1 208576516 208577276 -34087077 + Tigger2 DNA MER2_type 1 757 -1961 1319 119 62 35 chr1 208577318 208577358 -34086995 + Tigger2 DNA MER2_type 2462 2499 -219 2261 110 0 0 chr1 208577358 208577650 -34086703 - AluSc SINE Alu -17 292 1 1319 119 62 35 chr1 208577650 208577836 -34086517 + Tigger2 DNA MER2_type 2499 2694 -24 704 282 115 44 chr1 208578757 208579122 -34085231 - LTR16C LTR ERVL -4 487 97 874 332 90 30 chr1 208579813 208580059 -34084294 - HERV16 LTR ERVL -876 4888 4658 2259 186 29 54 chr1 208580059 208580344 -34084009 - MLT1C LTR MaLR 0 467 197 1775 181 0 16 chr1 208580344 208580647 -34083706 - AluJo SINE Alu -14 298 1 2259 186 29 54 chr1 208580647 208580840 -34083513 - MLT1C LTR MaLR -270 197 1 874 332 90 30 chr1 208580840 208582158 -34082195 - HERV16 LTR ERVL -1106 4658 3152 853 344 83 34 chr1 208582210 208582629 -34081724 - HERV16 LTR ERVL -3427 1569 1136 1998 146 10 0 chr1 208582629 208582923 -34081430 - AluSq SINE Alu -16 297 1 853 344 83 34 chr1 208582923 208583226 -34081127 - HERV16 LTR ERVL -3860 1136 849 277 319 121 20 chr1 208583430 208583678 -34080675 - L2 LINE L2 -675 2639 2367 710 143 19 9 chr1 208583682 208583787 -34080566 - AluJb SINE Alu -22 290 185 357 295 33 11 chr1 208583795 208583978 -34080375 - L1ME1 LINE L1 -5321 1075 889 * 5198 236 81 69 chr1 208583977 208584124 -34080229 + L1ME1 LINE L1 1069 1213 -5002 2262 102 3 3 chr1 208584124 208584417 -34079936 + AluSx SINE Alu 1 293 -19 5198 236 81 69 chr1 208584417 208584758 -34079595 + L1ME1 LINE L1 1213 1549 -4666 2101 119 27 0 chr1 208584758 208585052 -34079301 + AluSx SINE Alu 1 302 -10 5198 236 81 69 chr1 208585052 208585605 -34078748 + L1ME1 LINE L1 1549 2094 -4121 1623 117 17 13 chr1 208585605 208585836 -34078517 + AluSg/x SINE Alu 77 308 -2 5198 236 81 69 chr1 208585836 208586083 -34078270 + L1ME1 LINE L1 2094 2337 -3878 204 97 0 0 chr1 208586083 208586114 -34078239 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5198 236 81 69 chr1 208586114 208586754 -34077599 + L1ME1 LINE L1 2337 2968 -3247 1349 192 69 4 chr1 208586754 208587015 -34077338 + AluJo SINE Alu 5 282 -30 5198 236 81 69 chr1 208587015 208587522 -34076831 + L1ME1 LINE L1 2968 3468 -2747 1378 184 54 11 chr1 208587522 208587800 -34076553 - AluJo SINE Alu -21 291 2 5198 236 81 69 chr1 208587800 208587954 -34076399 + L1ME1 LINE L1 3468 3619 -2596 2074 120 31 0 chr1 208587954 208588245 -34076108 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr1 208588246 208588266 -34076087 + (TA)n Simple_repeat Simple_repeat 1 20 0 5198 236 81 69 chr1 208588266 208588771 -34075582 + L1ME1 LINE L1 3619 4226 -1989 2295 75 6 35 chr1 208588771 208589089 -34075264 + AluY SINE Alu 1 309 -2 5198 236 81 69 chr1 208589089 208589212 -34075141 + L1ME1 LINE L1 4226 4346 -1869 1371 155 42 125 chr1 208589216 208589523 -34074830 + MLT1B LTR MaLR 1 243 -122 2158 101 0 24 chr1 208589523 208589821 -34074532 - AluSx SINE Alu -21 291 1 1371 155 42 125 chr1 208589821 208589902 -34074451 + MLT1B LTR MaLR 243 329 -36 3680 214 67 34 chr1 208589913 208591210 -34073143 + L1ME1 LINE L1 4349 5694 -541 2245 94 0 3 chr1 208591210 208591508 -34072845 - AluSq SINE Alu -16 297 1 3680 214 67 34 chr1 208591508 208591786 -34072567 + L1ME1 LINE L1 5694 5961 -274 2217 73 14 7 chr1 208591786 208592075 -34072278 + AluY SINE Alu 1 291 -20 1010 92 8 0 chr1 208592090 208592221 -34072132 + AluSq/x SINE Alu 1 132 -181 194 316 25 12 chr1 208593678 208593765 -34070588 + MIR SINE MIR 38 123 -93 428 247 0 0 chr1 208593907 208593984 -34070369 - MER2 DNA MER2_type -1 344 268 2162 159 0 23 chr1 208593997 208594080 -34070273 - MER2 DNA MER2_type -1 343 260 1713 181 7 3 chr1 208594080 208594367 -34069986 + AluSx SINE Alu 1 288 -24 2162 159 0 23 chr1 208594367 208594634 -34069719 - MER2 DNA MER2_type -84 260 1 239 54 27 0 chr1 208594688 208594725 -34069628 + (TTG)n Simple_repeat Simple_repeat 1 38 0 404 203 12 198 chr1 208594793 208595035 -34069318 - L2 LINE L2 -4 3309 3113 341 154 0 0 chr1 208595140 208595205 -34069148 - L1MD2 LINE L1 -1 6358 6294 1701 249 77 35 chr1 208595208 208595920 -34068433 - L1MDa LINE L1 -2275 4265 3524 3271 173 53 55 chr1 208595931 208596374 -34067979 - L1MDa LINE L1 -3496 3044 2602 2255 91 0 20 chr1 208596374 208596671 -34067682 - AluSx SINE Alu -21 291 1 3271 173 53 55 chr1 208596671 208597402 -34066951 - L1MDa LINE L1 -3938 2602 1857 834 199 64 0 chr1 208597409 208597580 -34066773 - L1MDa LINE L1 -6357 183 2 621 273 53 18 chr1 208597732 208597959 -34066394 + MIR SINE MIR 28 262 0 365 311 46 96 chr1 208598133 208598221 -34066132 - L3 LINE CR1 -907 670 579 1689 174 35 0 chr1 208598221 208598509 -34065844 - AluJb SINE Alu -14 298 1 365 311 46 96 chr1 208598509 208598520 -34065833 - L3 LINE CR1 -998 579 569 2484 78 0 7 chr1 208598520 208598827 -34065526 - AluSq SINE Alu -8 305 1 365 311 46 96 chr1 208598827 208599092 -34065261 - L3 LINE CR1 -1008 569 323 22 0 0 0 chr1 208599361 208599383 -34064970 + AT_rich Low_complexity Low_complexity 1 22 0 1370 101 5 11 chr1 208599588 208599801 -34064552 - AluSg/x SINE Alu 0 306 95 2273 109 0 0 chr1 208600710 208601003 -34063350 - AluSx SINE Alu -19 293 1 189 266 62 16 chr1 208601959 208602023 -34062330 + MIR3 SINE MIR 108 174 -34 855 291 82 12 chr1 208602132 208602451 -34061902 + L2 LINE L2 2147 2487 -827 207 0 0 0 chr1 208602633 208602656 -34061697 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2243 96 0 0 chr1 208602658 208602949 -34061404 - AluSx SINE Alu -19 293 3 637 307 59 7 chr1 208602963 208603233 -34061120 - L1MC/D LINE L1 -2214 5594 5311 497 306 57 24 chr1 208605532 208605780 -34058573 + MIR SINE MIR 4 259 -3 221 372 54 39 chr1 208608406 208608535 -34055818 + L2 LINE L2 3133 3263 -9 1054 74 107 0 chr1 208609829 208609978 -34054375 + AluY SINE Alu 140 304 -7 265 238 107 24 chr1 208614881 208614965 -34049388 - MIR SINE MIR -115 147 57 251 308 0 0 chr1 208620205 208620283 -34044070 - MER117 DNA MER1_type -119 78 1 384 348 90 58 chr1 208620720 208621200 -34043153 - L2 LINE L2 -1 3312 2818 627 260 91 112 chr1 208621212 208621469 -34042884 - L2 LINE L2 -1049 2265 2004 1705 150 66 7 chr1 208621469 208621742 -34042611 + AluJb SINE Alu 1 289 -23 627 260 91 112 chr1 208621742 208621767 -34042586 - L2 LINE L2 -1310 2004 1980 198 103 0 0 chr1 208621767 208621796 -34042557 + (CAA)n Simple_repeat Simple_repeat 2 30 0 627 260 91 112 chr1 208621796 208621996 -34042357 - L2 LINE L2 -1334 1980 1792 579 326 134 8 chr1 208622010 208622390 -34041963 - L2 LINE L2 -2144 1170 743 1869 75 0 0 chr1 208622958 208623184 -34041169 - AluY SINE Alu -85 226 1 2388 97 0 3 chr1 208623283 208623592 -34040761 - AluSg SINE Alu -2 308 1 477 229 159 0 chr1 208624980 208625137 -34039216 - MER46C DNA MER2_type -35 303 122 1748 171 21 0 chr1 208625140 208625421 -34038932 + AluJb SINE Alu 1 287 -25 1919 157 24 0 chr1 208626447 208626740 -34037613 - AluJb SINE Alu -12 300 1 425 259 223 69 chr1 208628691 208628965 -34035388 + MER5C DNA MER1_type 9 324 0 213 368 190 12 chr1 208631605 208631768 -34032585 + L2 LINE L2 3080 3271 -1 1032 144 39 0 chr1 208633639 208633792 -34030561 - AluJb SINE Alu -17 295 137 248 305 61 12 chr1 208634132 208634214 -34030139 - L2 LINE L2 -19 3253 3168 1533 128 0 8 chr1 208636245 208636479 -34027874 - AluSg/x SINE Alu -2 308 77 230 180 20 0 chr1 208636705 208636755 -34027598 + MIR3 SINE MIR 113 163 -45 5257 103 27 6 chr1 208638165 208639005 -34025348 + L1PA16 LINE L1 5279 6145 -21 389 169 144 56 chr1 208639130 208639167 -34025186 + MIR SINE MIR 86 118 -144 2208 110 3 3 chr1 208639167 208639476 -34024877 - AluSx SINE Alu -3 309 1 389 169 144 56 chr1 208639476 208639598 -34024755 + MIR SINE MIR 118 259 -3 477 260 107 11 chr1 208641912 208642089 -34022264 + MLT1L LTR MaLR 1 194 -421 325 247 47 0 chr1 208642139 208642224 -34022129 + MLT1L LTR MaLR 413 501 -114 4212 107 115 130 chr1 208643134 208644560 -34019793 - pTR5 LTR ERV1 0 2438 743 2838 125 2 11 chr1 208644804 208645244 -34019109 - L1PA15 LINE L1 0 6165 5730 183 80 0 0 chr1 208645732 208645757 -34018596 + (T)n Simple_repeat Simple_repeat 1 25 0 464 291 20 40 chr1 208645758 208645957 -34018396 + L1M4 LINE L1 3792 3986 -2160 6427 49 5 1 chr1 208646044 208646876 -34017477 + L1PA5 LINE L1 5298 6132 -22 316 282 28 21 chr1 208646909 208647051 -34017302 + L1M4 LINE L1 4182 4324 -1822 2396 87 0 10 chr1 208647057 208647366 -34016987 + AluSx SINE Alu 1 306 -6 265 61 0 76 chr1 208648621 208648687 -34015666 + (TCC)n Simple_repeat Simple_repeat 1 61 0 773 301 135 16 chr1 208648687 208649116 -34015237 + MLT1J LTR MaLR 32 511 0 22 0 0 0 chr1 208649612 208649634 -34014719 + AT_rich Low_complexity Low_complexity 1 22 0 505 338 103 0 chr1 208649843 208650124 -34014229 + L2 LINE L2 2360 2669 -645 2156 142 0 0 chr1 208650162 208650465 -34013888 - AluSx SINE Alu -9 303 1 1248 62 0 0 chr1 208650469 208650631 -34013722 + (TTC)n Simple_repeat Simple_repeat 1 162 0 493 140 10 10 chr1 208650633 208650733 -34013620 + CT-rich Low_complexity Low_complexity 2 101 0 1597 171 31 14 chr1 208652348 208652640 -34011713 + AluJo SINE Alu 1 297 -15 467 174 335 6 chr1 208652786 208652947 -34011406 + LTR50 LTR ERVL 170 383 -412 511 249 115 43 chr1 208652954 208652982 -34011371 + LTR50 LTR ERVL 525 550 -245 2174 129 0 7 chr1 208652982 208653291 -34011062 - AluSx SINE Alu -5 307 1 511 249 115 43 chr1 208653291 208653515 -34010838 + LTR50 LTR ERVL 550 795 0 27 0 0 0 chr1 208653546 208653573 -34010780 + AT_rich Low_complexity Low_complexity 1 27 0 1745 171 0 34 chr1 208653597 208653890 -34010463 - AluJb SINE Alu -29 283 1 286 310 88 29 chr1 208655498 208655669 -34008684 - MIR SINE MIR -79 183 3 3303 160 95 105 chr1 208655805 208656427 -34007926 - L1MC3 LINE L1 0 7785 7096 225 300 0 0 chr1 208656427 208656507 -34007846 - MLT1F1 LTR MaLR -453 114 35 3303 160 95 105 chr1 208656507 208656809 -34007544 - L1MC3 LINE L1 -689 7096 6792 324 175 0 0 chr1 208656832 208656895 -34007458 + (TA)n Simple_repeat Simple_repeat 1 63 0 1576 188 110 33 chr1 208658384 208658911 -34005442 - MLT2A2 LTR ERVL 0 554 1 258 336 82 18 chr1 208659530 208659640 -34004713 - L2 LINE L2 -5 3267 3151 2135 163 29 88 chr1 208659802 208660293 -34004060 - MLT2B2 LTR ERVL 0 515 54 21 0 0 0 chr1 208660751 208660772 -34003581 + AT_rich Low_complexity Low_complexity 1 21 0 711 169 27 40 chr1 208661168 208661316 -34003037 + MLT1B LTR MaLR 1 146 -244 838 169 87 15 chr1 208661655 208661850 -34002503 - MER3 DNA MER1_type 0 209 1 757 248 122 14 chr1 208663702 208664051 -34000302 + L2 LINE L2 2230 2692 -622 286 149 0 0 chr1 208664054 208664101 -34000252 - L2 LINE L2 -560 2754 2708 2326 95 0 7 chr1 208664102 208664398 -33999955 - AluSq SINE Alu -19 294 1 1968 175 51 42 chr1 208664439 208664867 -33999486 + MSTB1 LTR MaLR 1 432 0 611 308 35 56 chr1 208664868 208665154 -33999199 + L2 LINE L2 3028 3307 -6 420 294 143 28 chr1 208666349 208666635 -33997718 + L2 LINE L2 2946 3264 -49 705 282 97 4 chr1 208666683 208666910 -33997443 + MIR SINE MIR 15 262 0 613 277 25 35 chr1 208667126 208667256 -33997097 + MIR SINE MIR 2 132 -130 14169 139 20 16 chr1 208667256 208668552 -33995801 + Tigger1 DNA MER2_type 1 1290 -1128 1751 177 10 16 chr1 208668552 208668862 -33995491 - AluJb SINE Alu -4 308 1 14169 139 20 16 chr1 208668862 208669600 -33994753 + Tigger1 DNA MER2_type 1290 2049 -369 2324 95 13 0 chr1 208669600 208669904 -33994449 + AluSx SINE Alu 1 308 -4 14169 139 20 16 chr1 208669904 208670276 -33994077 + Tigger1 DNA MER2_type 2049 2418 0 613 277 25 35 chr1 208670276 208670347 -33994006 + MIR SINE MIR 132 201 -61 2068 133 93 42 chr1 208671197 208671604 -33992749 + MSTA LTR MaLR 1 428 0 1537 145 67 47 chr1 208672860 208673110 -33991243 - L1MD1 LINE L1 -2 6240 5979 2174 91 0 11 chr1 208673110 208673424 -33990929 + AluY SINE Alu 1 311 0 1537 145 67 47 chr1 208673424 208673516 -33990837 - L1MD1 LINE L1 -263 5979 5890 635 162 9 0 chr1 208673516 208673621 -33990732 - FLAM_A SINE Alu -11 131 26 2873 130 10 20 chr1 208673626 208674135 -33990218 - L1MD1 LINE L1 -358 5884 5381 359 169 0 0 chr1 208674136 208674195 -33990158 - Tigger3b DNA MER2_type 0 1231 1173 8205 207 85 11 chr1 208674205 208674668 -33989685 - L1MA1 LINE L1 -2 7719 7292 2143 102 105 9 chr1 208674668 208675010 -33989343 + THE1C LTR MaLR 1 375 0 8205 207 85 11 chr1 208675010 208676793 -33987560 - L1MA1 LINE L1 -429 7292 5642 1015 66 26 0 chr1 208676793 208676944 -33987409 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 8205 207 85 11 chr1 208676944 208678423 -33985930 - L1MA1 LINE L1 -2079 5642 3575 1888 110 97 9 chr1 208678424 208678743 -33985610 + THE1C LTR MaLR 3 349 -26 1399 139 12 28 chr1 208678747 208678999 -33985354 - L1MA1 LINE L1 -5980 1586 1339 955 172 10 5 chr1 208679004 208679196 -33985157 - L1MA1 LINE L1 -6668 898 706 2027 198 55 33 chr1 208679204 208679694 -33984659 - L1MA1 LINE L1 -7048 517 17 6729 136 29 6 chr1 208679702 208680860 -33983493 - Tigger3b DNA MER2_type -46 1185 1 2470 226 37 62 chr1 208680860 208681054 -33983299 - L1M4 LINE L1 -765 5381 5184 1062 206 183 19 chr1 208681054 208681311 -33983042 - AluJb SINE Alu -3 299 1 2470 226 37 62 chr1 208681311 208682202 -33982151 - L1M4 LINE L1 -962 5184 4323 1625 206 67 32 chr1 208682200 208682301 -33982052 - L1MDa LINE L1 -2974 3566 3470 * 3623 42 0 11 chr1 208682301 208682753 -33981600 - L1PA7 LINE L1 -2 6152 5706 1625 206 67 32 chr1 208682753 208682860 -33981493 - L1MDa LINE L1 -3070 3470 3368 843 39 0 0 chr1 208682860 208682963 -33981390 + (GA)n Simple_repeat Simple_repeat 2 104 0 1647 184 7 11 chr1 208682963 208683241 -33981112 - AluJb SINE Alu -34 278 2 1625 206 67 32 chr1 208683241 208683649 -33980704 - L1MDa LINE L1 -3171 3369 2921 6733 197 87 33 chr1 208683713 208684290 -33980063 - L1MDa LINE L1 -3959 2581 2037 2209 142 0 0 chr1 208684290 208684601 -33979752 - AluSx SINE Alu -1 311 1 6733 197 87 33 chr1 208684601 208684690 -33979663 - L1MDa LINE L1 -4503 2037 1954 1553 168 64 30 chr1 208684690 208684987 -33979366 - AluJo SINE Alu -5 307 1 1859 187 0 9 chr1 208684992 208685307 -33979046 - AluSx SINE Alu 0 312 1 6733 197 87 33 chr1 208685307 208686918 -33977435 - L1MDa LINE L1 -4589 1951 19 371 296 28 7 chr1 208686919 208687061 -33977292 - L1M4 LINE L1 -846 5300 5156 312 143 143 14 chr1 208688409 208688479 -33975874 - MER116 DNA Mariner 0 80 2 24 0 0 0 chr1 208690467 208690491 -33973862 + AT_rich Low_complexity Low_complexity 1 24 0 2145 116 0 7 chr1 208690896 208691199 -33973154 - AluSx SINE Alu -11 301 1 333 211 274 0 chr1 208691751 208691846 -33972507 + MIR SINE MIR 29 149 -113 648 234 6 0 chr1 208691897 208692055 -33972298 + MER63A DNA MER1_type 52 210 0 371 240 62 10 chr1 208692058 208692154 -33972199 + MIR SINE MIR 162 262 0 228 252 129 95 chr1 208692268 208692415 -33971938 + MIR SINE MIR 100 251 -11 307 323 154 26 chr1 208692433 208692699 -33971654 + L2 LINE L2 1866 2165 -1149 30776 96 11 21 chr1 208692976 208699388 -33964965 - L1PA7 LINE L1 0 6469 1 596 252 71 50 chr1 208699409 208699647 -33964706 + L2 LINE L2 3052 3294 -19 522 302 125 16 chr1 208700007 208700771 -33963582 - L1M2 LINE L1 -508 5783 4936 2123 184 12 35 chr1 208700815 208701304 -33963049 - L1MD3 LINE L1 -37 7958 7481 1397 210 81 47 chr1 208701304 208701751 -33962602 + MLT1C LTR MaLR 6 467 0 232 143 0 0 chr1 208701756 208701798 -33962555 - L1MC4 LINE L1 -695 7347 7306 423 216 0 11 chr1 208701801 208701889 -33962464 - MLT1F1 LTR MaLR -448 119 33 1030 184 12 20 chr1 208701889 208702134 -33962219 - L1MD3 LINE L1 -881 7114 6872 325 119 45 0 chr1 208702186 208702253 -33962100 - L1MA4 LINE L1 -1 6299 6230 340 328 57 79 chr1 208702301 208702438 -33961915 - L1M2 LINE L1 -1316 4830 4692 2354 92 7 0 chr1 208702438 208702743 -33961610 - AluSc SINE Alu -2 307 1 340 328 57 79 chr1 208702743 208702974 -33961379 - L1M2 LINE L1 -1454 4692 4470 270 234 70 119 chr1 208703121 208703322 -33961031 + MLT1L LTR MaLR 128 394 -193 421 343 11 34 chr1 208703489 208703757 -33960596 - L1M4 LINE L1 -1769 4377 4116 259 292 0 0 chr1 208703758 208703823 -33960530 - L2 LINE L2 -2 3311 3247 21 0 0 0 chr1 208703923 208703944 -33960409 + AT_rich Low_complexity Low_complexity 1 21 0 1340 265 40 20 chr1 208704390 208704982 -33959371 - L1ME3A LINE L1 -203 5967 5364 267 266 129 24 chr1 208705020 208705144 -33959209 + MIR SINE MIR 110 246 -16 255 115 66 0 chr1 208705208 208705269 -33959084 + CT-rich Low_complexity Low_complexity 3 67 0 2445 69 0 0 chr1 208705588 208705894 -33958459 - AluY SINE Alu -5 306 1 556 256 154 0 chr1 208705997 208706153 -33958200 - MER5A DNA MER1_type -6 183 4 272 322 77 7 chr1 208706279 208706422 -33957931 - L2 LINE L2 0 3313 3161 21 36 0 0 chr1 208706552 208706580 -33957773 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr1 208706669 208706691 -33957662 + (CA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr1 208706881 208706902 -33957451 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 228 35 0 0 chr1 208706901 208706930 -33957423 + (TG)n Simple_repeat Simple_repeat 2 30 0 2370 95 3 0 chr1 208707208 208707513 -33956840 + AluSp SINE Alu 1 306 -7 2163 107 17 0 chr1 208707876 208708166 -33956187 - AluSp SINE Alu -18 295 1 22 35 0 0 chr1 208708166 208708195 -33956158 + AT_rich Low_complexity Low_complexity 1 29 0 307 232 12 24 chr1 208708576 208708658 -33955695 - MLT1H LTR MaLR -388 161 81 279 350 32 8 chr1 208709800 208709923 -33954430 - MIR SINE MIR -111 151 26 3531 106 2 6 chr1 208709941 208710442 -33953911 - MER1A DNA MER1_type 0 529 31 236 256 93 0 chr1 208710474 208710560 -33953793 - MIR SINE MIR -59 203 110 26 0 0 0 chr1 208710945 208710971 -33953382 + AT_rich Low_complexity Low_complexity 1 26 0 309 156 26 0 chr1 208711495 208711572 -33952781 + L1ME4a LINE L1 5817 5895 -226 12579 120 40 77 chr1 208711722 208712329 -33952024 - Tigger1 DNA MER2_type 0 2418 1790 2042 153 3 0 chr1 208712329 208712624 -33951729 - AluSx SINE Alu -16 296 1 738 136 0 110 chr1 208712624 208712778 -33951575 - AluJb SINE Alu -171 141 5 12579 120 40 77 chr1 208712778 208714475 -33949878 - Tigger1 DNA MER2_type -627 1791 53 1561 125 129 37 chr1 208714475 208714747 -33949606 + AluSg SINE Alu 1 297 -13 12579 120 40 77 chr1 208714747 208714799 -33949554 - Tigger1 DNA MER2_type -2365 53 1 2253 174 46 13 chr1 208716244 208716393 -33947960 - L1MB5 LINE L1 -8 6166 6023 726 114 98 0 chr1 208716393 208716516 -33947837 + MER85 DNA T2_type 1 135 -4 2253 174 46 13 chr1 208716516 208716819 -33947534 - L1MB5 LINE L1 -151 6023 5699 304 267 0 0 chr1 208716837 208716912 -33947441 - HAL1 LINE L1 -2 2505 2431 572 291 130 32 chr1 208716948 208717447 -33946906 - L1MEc LINE L1 -5833 563 16 343 276 67 53 chr1 208717453 208717678 -33946675 - HAL1 LINE L1 -1540 967 740 584 128 0 0 chr1 208718106 208718200 -33946153 + LTR54B LTR ERV1 1 94 -404 2042 70 0 0 chr1 208720248 208720504 -33943849 - AluY SINE Alu -21 290 35 1354 25 12 0 chr1 208721035 208721198 -33943155 + L1PA4 LINE L1 5989 6153 -2 555 242 8 15 chr1 208721609 208721741 -33942612 - MER2 DNA MER2_type -214 131 1 453 293 91 79 chr1 208721974 208722493 -33941860 - L1MC4a LINE L1 -1925 5866 5342 310 240 54 0 chr1 208722495 208722624 -33941729 - L1MC4a LINE L1 -2354 5437 5302 1958 113 3 74 chr1 208722728 208723064 -33941289 - AluSx SINE Alu 0 312 1 5020 183 26 69 chr1 208723692 208724210 -33940143 + L1 LINE L1 2903 3441 -2705 3979 147 46 36 chr1 208724210 208724987 -33939366 + LTR1 LTR ERV1 1 785 0 5020 183 26 69 chr1 208724987 208725925 -33938428 + L1 LINE L1 3441 4297 -1849 846 303 55 46 chr1 208726016 208726319 -33938034 - L1MC4a LINE L1 -1477 4652 4353 2570 40 7 3 chr1 208726319 208726621 -33937732 - AluY SINE Alu -8 303 1 846 303 55 46 chr1 208726621 208726922 -33937431 - L1MC4a LINE L1 -1776 4353 4043 544 208 42 18 chr1 208727139 208727307 -33937046 - L1MC4a LINE L1 -5945 174 3 492 282 77 0 chr1 208727669 208727839 -33936514 + MIR SINE MIR 70 252 -10 396 217 0 52 chr1 208728040 208728155 -33936198 + MLT1J LTR MaLR 403 511 0 1771 202 66 97 chr1 208728538 208729220 -33935133 - LTR8A LTR ERV1 -66 661 1 679 345 70 32 chr1 208729368 208729925 -33934428 - ERVL LTR ERVL -395 5369 4792 513 208 67 13 chr1 208729941 208730090 -33934263 - LTR67 LTR ERVL 0 557 401 2006 147 50 11 chr1 208730391 208730752 -33933601 + THE1C LTR MaLR 1 375 0 527 171 19 0 chr1 208730904 208731009 -33933344 - L1MB5 LINE L1 -8 6166 6060 3840 97 44 2 chr1 208731128 208731696 -33932657 - L1PA13 LINE L1 -11 6152 5561 13105 195 46 12 chr1 208731698 208732956 -33931397 - L1PA13 LINE L1 -1640 5157 3943 186 43 0 0 chr1 208732956 208732979 -33931374 + (CAGTT)n Simple_repeat Simple_repeat 4 26 0 1766 196 0 3 chr1 208732979 208733270 -33931083 - AluSx SINE Alu -22 290 1 13105 195 46 12 chr1 208733270 208736882 -33927471 - L1PA13 LINE L1 -2853 3944 87 3090 186 72 28 chr1 208736885 208737905 -33926448 - L1MB5 LINE L1 -105 6069 5013 773 117 11 53 chr1 208738479 208738667 -33925686 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 246 274 30 48 chr1 208739106 208739274 -33925079 - L1ME4a LINE L1 0 6121 5957 1886 151 151 13 chr1 208739384 208739841 -33924512 + LTR48 LTR ERV1 1 520 -267 375 153 20 61 chr1 208739854 208739952 -33924401 + LTR48 LTR ERV1 678 771 -16 2608 77 4 0 chr1 208740471 208740921 -33923432 - L1P3 LINE L1 -538 5616 5165 1045 57 0 0 chr1 208740918 208741059 -33923294 + L1PA7 LINE L1 5760 5900 -254 * 1544 151 17 14 chr1 208741059 208741351 -33923002 + Tigger1 DNA MER2_type 2056 2348 -70 180 243 0 0 chr1 208741365 208741402 -33922951 - L3 LINE CR1 -490 1087 1051 260 366 8 24 chr1 208741494 208741617 -33922736 + L3 LINE CR1 1051 1171 -406 364 159 0 91 chr1 208741620 208741708 -33922645 + L1MC4 LINE L1 7816 7895 -147 288 77 0 0 chr1 208741708 208741747 -33922606 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 600 126 11 0 chr1 208741849 208741944 -33922409 - L1PA7 LINE L1 -111 6043 5948 2401 133 43 0 chr1 208741944 208742365 -33921988 - Tigger1 DNA MER2_type -680 1738 1300 383 297 160 24 chr1 208742530 208742742 -33921611 - MIR SINE MIR -2 260 20 304 236 42 0 chr1 208742767 208742839 -33921514 + L2 LINE L2 3198 3272 0 22 0 0 0 chr1 208742943 208742965 -33921388 + AT_rich Low_complexity Low_complexity 1 22 0 2330 166 44 7 chr1 208742986 208743396 -33920957 - MSTB LTR MaLR -1 425 1 223 335 73 61 chr1 208743482 208743532 -33920821 + L2 LINE L2 3091 3139 -133 2334 161 23 39 chr1 208743532 208743967 -33920386 + MSTA LTR MaLR 1 428 0 223 335 73 61 chr1 208743967 208744080 -33920273 + L2 LINE L2 3139 3256 -16 521 207 26 9 chr1 208744136 208744252 -33920101 + MIR SINE MIR 63 180 -82 944 30 0 53 chr1 208745311 208745442 -33918911 - L1PA5 LINE L1 0 6154 6031 6362 49 7 5 chr1 208745613 208746422 -33917931 + L1PA4 LINE L1 5345 6155 0 510 334 71 27 chr1 208746458 208746826 -33917527 + MER93a LTR ERV1 19 402 0 387 0 0 0 chr1 208747443 208747486 -33916867 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 211 226 57 0 chr1 208747488 208747541 -33916812 - MIR SINE MIR -98 164 109 29 0 0 0 chr1 208748270 208748299 -33916054 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 208749125 208749149 -33915204 + AT_rich Low_complexity Low_complexity 1 24 0 1341 159 16 104 chr1 208749151 208749309 -33915044 - AluJb SINE Alu -30 282 163 2106 126 0 0 chr1 208749309 208749594 -33914759 - AluSx SINE Alu -27 285 1 1341 159 16 104 chr1 208749594 208749744 -33914609 - AluJb SINE Alu -149 163 1 232 214 31 41 chr1 208750035 208750133 -33914220 - L1ME4a LINE L1 -1 6120 6024 1191 196 31 64 chr1 208750199 208750408 -33913945 - MER69 DNA AcHobo -7 2519 2329 2393 94 0 0 chr1 208750408 208750716 -33913637 - AluSc SINE Alu 0 309 2 1191 196 31 64 chr1 208750716 208750925 -33913428 - MER69 DNA AcHobo -197 2329 2115 1735 186 3 0 chr1 208751314 208751642 -33912711 - LTR26B LTR ERV1 0 531 203 20130 62 10 5 chr1 208751657 208754902 -33909451 + L1PA6 LINE L1 2599 5854 -300 6973 57 9 1 chr1 208755002 208756080 -33908273 + L1PA6 LINE L1 5063 6149 -5 1177 125 14 0 chr1 208756176 208756383 -33907970 - LTR26B LTR ERV1 -330 292 1 545 285 37 27 chr1 208756518 208756741 -33907612 - L1ME4a LINE L1 -237 5884 5656 3642 65 8 4 chr1 208756741 208757216 -33907137 - L1PA6 LINE L1 -1 6153 5677 545 285 37 27 chr1 208757216 208757290 -33907063 - L1ME4a LINE L1 -465 5656 5584 10473 68 17 2 chr1 208758226 208760383 -33903970 + L1PA6 LINE L1 3982 6149 -5 1177 125 14 0 chr1 208760479 208760686 -33903667 - LTR26B LTR ERV1 -330 292 1 545 285 37 27 chr1 208760821 208761044 -33903309 - L1ME4a LINE L1 -237 5884 5656 3642 65 8 4 chr1 208761044 208761519 -33902834 - L1PA6 LINE L1 -1 6153 5677 545 285 37 27 chr1 208761519 208761593 -33902760 - L1ME4a LINE L1 -465 5656 5584 254 344 70 0 chr1 208763213 208763370 -33900983 - L2 LINE L2 -214 3058 2891 267 250 56 0 chr1 208764573 208764645 -33899708 + L2 LINE L2 3223 3298 -15 444 338 14 9 chr1 208764852 208765071 -33899282 - ERVL LTR ERVL -1014 4750 4531 505 293 60 26 chr1 208765114 208765366 -33898987 - ERVL LTR ERVL -2163 3601 3338 2329 74 27 18 chr1 208765366 208765703 -33898650 - L1PA10 LINE L1 -1 6167 5828 505 293 60 26 chr1 208765703 208765716 -33898637 - ERVL LTR ERVL -2426 3338 3327 991 306 75 62 chr1 208765887 208766882 -33897471 - ERVL LTR ERVL -2640 3124 2117 4056 180 4 6 chr1 208768937 208769730 -33894623 - L1PA16 LINE L1 -24 6199 5409 7566 196 17 31 chr1 208769741 208771458 -33892895 - L1PA16 LINE L1 -780 5423 3751 1063 80 0 37 chr1 208771458 208771645 -33892708 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7566 196 17 31 chr1 208771645 208771872 -33892481 - L1PA16 LINE L1 -2452 3751 3522 561 111 33 0 chr1 208771888 208771978 -33892375 + L1PA15-16 LINE L1 2157 2249 -4600 378 196 10 10 chr1 208771987 208772089 -33892264 - L1 LINE L1 -2740 3406 3305 * 3037 211 47 100 chr1 208772088 208772470 -33891883 - L1PA16 LINE L1 -3891 2312 1911 866 144 0 15 chr1 208772470 208772602 -33891751 - FLAM_C SINE Alu -3 130 1 3037 211 47 100 chr1 208772602 208773371 -33890982 - L1PA16 LINE L1 -4292 1911 1178 2010 138 0 40 chr1 208773371 208773696 -33890657 - AluSx SINE Alu 0 312 1 3037 211 47 100 chr1 208773696 208774441 -33889912 - L1PA16 LINE L1 -5025 1178 395 318 319 89 79 chr1 208775017 208775534 -33888819 - L1M2 LINE L1 -6318 531 10 715 260 151 22 chr1 208776371 208776680 -33887673 - MLT1I LTR MaLR 0 409 61 1462 187 31 121 chr1 208776680 208777193 -33887160 + MLT1C LTR MaLR 1 467 0 2141 122 6 6 chr1 208778422 208778734 -33885619 - AluSx SINE Alu 0 312 1 204 315 0 0 chr1 208778903 208778957 -33885396 - MIR SINE MIR -21 241 188 236 324 143 0 chr1 208779735 208779840 -33884513 - L2 LINE L2 -563 2751 2632 280 309 11 32 chr1 208780371 208780465 -33883888 - L2 LINE L2 -189 3083 2992 14228 131 40 9 chr1 208780570 208782792 -33881561 + Tigger1 DNA MER2_type 1 2300 -118 2441 86 3 0 chr1 208782792 208783094 -33881259 - AluSp SINE Alu -10 303 1 14228 131 40 9 chr1 208783094 208783217 -33881136 + Tigger1 DNA MER2_type 2300 2418 0 23 0 0 0 chr1 208783281 208783304 -33881049 + AT_rich Low_complexity Low_complexity 1 23 0 285 237 42 51 chr1 208783534 208783652 -33880701 + MLT1J LTR MaLR 100 216 -295 2249 251 49 10 chr1 208783744 208784458 -33879895 + L1ME1 LINE L1 5405 6146 -20 32 0 0 0 chr1 208784627 208784659 -33879694 + AT_rich Low_complexity Low_complexity 1 32 0 1521 221 0 20 chr1 208784659 208784953 -33879400 - AluJo SINE Alu -24 288 1 5685 110 16 12 chr1 208785695 208786931 -33877422 - L1PA16 LINE L1 -9 6157 4918 413 292 111 32 chr1 208787723 208787939 -33876414 + L2 LINE L2 2554 2786 -528 3835 180 44 31 chr1 208787953 208788842 -33875511 - L1MA10 LINE L1 -16 6318 5419 684 252 243 6 chr1 208788955 208789292 -33875061 + L2 LINE L2 2891 3307 -6 1057 125 6 0 chr1 208789597 208789765 -33874588 - L1MA9 LINE L1 -7 6305 6137 1580 153 60 13 chr1 208789767 208790081 -33874272 + L1M2 LINE L1 5452 5780 -532 222 37 0 0 chr1 208790083 208790110 -33874243 + (CA)n Simple_repeat Simple_repeat 2 28 0 479 189 0 0 chr1 208790152 208790242 -33874111 + Tigger5 DNA MER2_type 2234 2323 0 660 353 88 29 chr1 208790625 208791413 -33872940 + L2 LINE L2 2429 3262 -10 2082 126 14 0 chr1 208791416 208791709 -33872644 + AluSx SINE Alu 1 297 -15 670 275 171 32 chr1 208794144 208794584 -33869769 + Tigger8 DNA MER2_type 155 655 -11 222 219 0 0 chr1 208794686 208794727 -33869626 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 1911 111 70 0 chr1 208794735 208795005 -33869348 - AluSg1 SINE Alu -17 292 4 288 340 120 10 chr1 208795591 208795800 -33868553 + MIR SINE MIR 21 252 -10 2444 170 51 4 chr1 208795843 208796313 -33868040 + MLT1D LTR MaLR 1 492 -13 500 255 43 52 chr1 208796414 208796645 -33867708 + MLT1L LTR MaLR 145 373 -242 190 348 138 42 chr1 208797103 208797646 -33866707 + L2 LINE L2 2365 2959 -355 207 295 13 51 chr1 208797892 208797970 -33866383 + L2 LINE L2 3238 3312 -1 1048 179 104 52 chr1 208798092 208798400 -33865953 + MER33 DNA MER1_type 1 324 0 311 171 0 179 chr1 208798410 208798527 -33865826 + MER58 DNA MER1_type 4 99 -2321 365 167 19 102 chr1 208798532 208798602 -33865751 + MER58 DNA MER1_type 2319 2378 -42 1806 180 0 23 chr1 208798602 208798908 -33865445 + AluJo SINE Alu 1 299 -13 365 167 19 102 chr1 208798908 208798945 -33865408 + MER58 DNA MER1_type 2378 2417 -3 327 346 84 55 chr1 208799262 208800086 -33864267 - L2 LINE L2 -72 3200 2366 202 304 188 0 chr1 208800159 208800228 -33864125 - L2 LINE L2 -52 3220 3139 23 0 0 0 chr1 208800880 208800903 -33863450 + AT_rich Low_complexity Low_complexity 1 23 0 219 244 100 22 chr1 208801748 208801838 -33862515 + MIR SINE MIR 110 206 -56 312 230 40 0 chr1 208802240 208802314 -33862039 - MIR SINE MIR -82 180 104 707 302 9 0 chr1 208802781 208802993 -33861360 - MIR SINE MIR 0 262 49 339 251 38 38 chr1 208803183 208803366 -33860987 + L1MC5 LINE L1 7611 7793 -168 324 302 65 22 chr1 208803398 208803537 -33860816 + L1MC5 LINE L1 7782 7926 -35 316 287 0 0 chr1 208804263 208804357 -33859996 - MER46C DNA MER2_type 0 338 245 2005 105 17 86 chr1 208804365 208804727 -33859626 - MER1B DNA MER1_type 0 337 1 339 320 33 26 chr1 208805393 208805546 -33858807 - MIR SINE MIR -52 210 57 362 282 126 17 chr1 208806000 208806174 -33858179 + MIR SINE MIR 66 258 -4 243 0 0 0 chr1 208806237 208806264 -33858089 + (T)n Simple_repeat Simple_repeat 1 27 0 1730 250 83 46 chr1 208807702 208808306 -33856047 - MLT1E2 LTR MaLR 0 626 1 467 226 17 0 chr1 208809923 208810038 -33854315 - L1MD3 LINE L1 -27 7968 7852 2466 212 66 41 chr1 208810093 208810899 -33853454 - L1MC4a LINE L1 -121 7687 6862 1841 158 22 86 chr1 208810960 208811377 -33852976 + MLT1B LTR MaLR 1 390 0 413 326 36 5 chr1 208813030 208813251 -33851102 - L1MC4a LINE L1 -2265 5543 5316 1624 89 36 9 chr1 208814399 208814623 -33849730 - MER30 DNA MER1_type 0 230 1 180 77 0 0 chr1 208814827 208814853 -33849500 + (TG)n Simple_repeat Simple_repeat 1 26 0 560 238 77 6 chr1 208814912 208815093 -33849260 + L1MD3 LINE L1 7658 7851 -144 4262 179 39 15 chr1 208815108 208815317 -33849036 - L1MA10 LINE L1 -10 6324 6121 411 113 0 0 chr1 208815317 208815379 -33848974 + (TA)n Simple_repeat Simple_repeat 1 62 0 2099 92 63 0 chr1 208815382 208815666 -33848687 - AluSp SINE Alu -11 302 1 4262 179 39 15 chr1 208815666 208816328 -33848025 - L1MA10 LINE L1 -214 6120 5428 2281 142 3 0 chr1 208816328 208816691 -33847662 - L1PB1 LINE L1 -2 6865 6498 272 226 54 0 chr1 208816706 208816799 -33847554 + (TA)n Simple_repeat Simple_repeat 2 99 0 10742 191 13 10 chr1 208816829 208819799 -33844554 - L1PB1 LINE L1 -434 6433 3456 1017 226 96 20 chr1 208819791 208821106 -33843247 - L1PB1 LINE L1 -5298 1565 6 * 557 165 16 2 chr1 208821116 208821245 -33843108 - L1MC/D LINE L1 -737 5431 5317 472 243 11 45 chr1 208821409 208821586 -33842767 - L1ME2 LINE L1 -4 6229 6059 2101 237 90 25 chr1 208821598 208822000 -33842353 - L1ME2 LINE L1 -405 5828 5454 252 0 0 0 chr1 208822000 208822028 -33842325 + (TG)n Simple_repeat Simple_repeat 1 28 0 2101 237 90 25 chr1 208822028 208823047 -33841306 - L1ME2 LINE L1 -779 5454 4305 806 163 0 15 chr1 208823055 208823190 -33841163 - FLAM_C SINE Alu 0 133 1 1637 134 44 87 chr1 208823279 208823853 -33840500 - MER51A LTR ERV1 0 634 1 866 254 14 14 chr1 208823872 208824163 -33840190 - L1ME2 LINE L1 -3162 3053 2763 824 162 7 7 chr1 208824194 208824330 -33840023 - AluJb SINE Alu -176 136 1 1177 294 39 8 chr1 208824330 208825018 -33839335 - L1ME2 LINE L1 -3444 2771 2103 337 311 33 66 chr1 208825570 208825814 -33838539 + MER102b DNA MER1_type 106 341 0 24 0 0 0 chr1 208825931 208825955 -33838398 + AT_rich Low_complexity Low_complexity 1 24 0 1811 168 8 65 chr1 208826226 208826613 -33837740 - MLT1A1 LTR MaLR 0 365 1 2238 261 41 54 chr1 208827886 208828007 -33836346 + L2 LINE L2 2210 2331 -982 2228 120 10 0 chr1 208828007 208828306 -33836047 + AluSx SINE Alu 1 302 -10 2238 261 41 54 chr1 208828306 208829139 -33835214 + L2 LINE L2 2331 3148 -165 1631 222 36 20 chr1 208829142 208829584 -33834769 - MLT1C LTR MaLR 0 467 19 187 299 190 29 chr1 208829584 208829721 -33834632 + L2 LINE L2 3134 3292 -21 578 123 38 0 chr1 208830259 208830477 -33833876 + (TATAA)n Simple_repeat Simple_repeat 1 226 0 291 87 87 22 chr1 208830482 208830620 -33833733 + (TA)n Simple_repeat Simple_repeat 2 148 0 2622 101 43 0 chr1 208830620 208831015 -33833338 - MLT2A2 LTR ERVL -41 412 1 2173 145 80 40 chr1 208831073 208831522 -33832831 + MLT1C LTR MaLR 1 467 0 2195 156 13 30 chr1 208832473 208832870 -33831483 + MLT1B LTR MaLR 1 390 0 949 287 66 53 chr1 208833242 208833896 -33830457 - L2 LINE L2 -1 3312 2631 3995 76 39 61 chr1 208834308 208834930 -33829423 - LTR66 LTR ERVL -2 608 1 22 35 0 0 chr1 208835375 208835404 -33828949 + AT_rich Low_complexity Low_complexity 1 29 0 375 334 122 45 chr1 208836206 208836517 -33827836 + L2 LINE L2 2291 2625 -689 316 367 89 48 chr1 208836526 208836774 -33827579 + L2 LINE L2 2930 3187 -85 647 314 30 24 chr1 208837281 208837785 -33826568 + L1ME2 LINE L1 3472 3978 -2168 340 339 65 22 chr1 208837787 208838017 -33826336 + MLT1J LTR MaLR 1 240 -271 588 287 145 42 chr1 208838186 208838751 -33825602 + L1ME2 LINE L1 3916 4538 -1608 234 239 0 0 chr1 208838780 208838851 -33825502 + (TA)n Simple_repeat Simple_repeat 1 71 0 807 270 76 40 chr1 208838856 208839531 -33824822 + L1ME2 LINE L1 4576 5274 -872 562 312 40 9 chr1 208839835 208840184 -33824169 + L1ME2 LINE L1 5593 5952 -212 2266 165 43 21 chr1 208840879 208841105 -33823248 - MSTA LTR MaLR -1 427 186 330 45 0 0 chr1 208841105 208841149 -33823204 + (GA)n Simple_repeat Simple_repeat 1 44 0 2266 165 43 21 chr1 208841149 208841340 -33823013 - MSTA LTR MaLR -242 186 1 2866 178 38 38 chr1 208841396 208842008 -33822345 + LTR9 LTR ERV1 1 612 0 217 298 124 91 chr1 208843016 208843355 -33820998 + L2 LINE L2 1864 2213 -1101 5994 40 24 24 chr1 208843389 208844141 -33820212 - SVA Other Other 0 1386 635 256 237 0 26 chr1 208844289 208844365 -33819988 + C-rich Low_complexity Low_complexity 4 77 0 329 334 107 59 chr1 208844584 208844712 -33819641 - L1M2 LINE L1 -5772 1077 957 2353 100 140 9 chr1 208844712 208845133 -33819220 - SVA Other Other -518 868 393 329 334 107 59 chr1 208845133 208845378 -33818975 - L1M2 LINE L1 -5892 957 686 215 368 47 0 chr1 208846689 208846795 -33817558 + L2 LINE L2 2207 2317 -997 316 253 25 43 chr1 208846805 208846967 -33817386 - LTR41 LTR ERVL -7 766 608 558 228 37 58 chr1 208847197 208847386 -33816967 - LTR41 LTR ERVL -588 185 1 200 364 25 17 chr1 208847455 208847573 -33816780 + L2 LINE L2 2397 2515 -799 246 234 11 21 chr1 208848164 208848258 -33816095 - Charlie7 DNA MER1_type -51 2561 2469 242 322 98 56 chr1 208848567 208848710 -33815643 + MIR3 SINE MIR 3 151 -57 213 352 86 19 chr1 208848911 208849016 -33815337 - L3 LINE CR1 -59 1518 1407 322 366 31 19 chr1 208849111 208849272 -33815081 - L3 LINE CR1 -301 1276 1114 270 227 27 27 chr1 208851557 208851632 -33812721 + MER39 LTR ERV1 633 707 0 1010 219 156 17 chr1 208851657 208851959 -33812394 - MER39 LTR ERV1 -104 603 260 566 200 64 0 chr1 208851936 208852061 -33812292 - MER39 LTR ERV1 -574 133 1 * 290 353 48 11 chr1 208852664 208852851 -33811502 + MIR SINE MIR 14 207 -55 329 311 84 0 chr1 208853480 208853599 -33810754 - HERVL LTR ERVL -2572 3082 2954 8785 35 6 0 chr1 208853599 208854800 -33809553 - L1PA4 LINE L1 -689 5466 4261 4289 40 5 9 chr1 208854800 208855357 -33808996 + L1PA4 LINE L1 5462 6016 -139 950 47 0 8 chr1 208855458 208855586 -33808767 + L1PA4 LINE L1 6026 6152 -3 983 349 74 37 chr1 208855661 208856877 -33807476 - HERVL LTR ERVL -2756 2898 1638 3787 195 50 6 chr1 208856882 208858149 -33806204 + L1MB7 LINE L1 4862 6181 -3 461 333 30 0 chr1 208858168 208858333 -33806020 - HERVL LTR ERVL -4103 1661 1492 830 108 0 0 chr1 208859000 208859111 -33805242 + AluY SINE Alu 166 276 -35 40 0 0 0 chr1 208859157 208859197 -33805156 + AT_rich Low_complexity Low_complexity 1 40 0 654 298 53 29 chr1 208859482 208859727 -33804626 - LTR16C LTR ERVL -10 481 231 323 365 0 0 chr1 208860057 208860142 -33804211 + L2 LINE L2 3143 3227 -45 21 36 0 0 chr1 208860216 208860244 -33804109 + AT_rich Low_complexity Low_complexity 1 28 0 243 211 0 0 chr1 208860273 208860325 -33804028 + L2 LINE L2 3262 3313 0 294 169 0 0 chr1 208860599 208860664 -33803689 + (CA)n Simple_repeat Simple_repeat 2 66 0 25 65 0 0 chr1 208860743 208860789 -33803564 + AT_rich Low_complexity Low_complexity 1 46 0 314 327 127 90 chr1 208860967 208861267 -33803086 + L2 LINE L2 2938 3248 -24 352 320 49 35 chr1 208861300 208861584 -33802769 + L2 LINE L2 2816 3103 -169 219 88 0 0 chr1 208861855 208861889 -33802464 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 6470 98 7 3 chr1 208861889 208863313 -33801040 - L1PA10 LINE L1 -21 6147 4718 204 302 141 13 chr1 208863602 208863751 -33800602 + MIR SINE MIR 85 252 -10 2441 70 3 0 chr1 208863894 208864192 -33800161 - AluY SINE Alu -12 299 1 464 70 127 0 chr1 208864373 208864444 -33799909 - MADE1 DNA Mariner 0 80 1 1851 279 89 34 chr1 208864961 208866022 -33798331 - L2 LINE L2 -5 3308 2182 237 33 0 0 chr1 208866539 208866569 -33797784 + (T)n Simple_repeat Simple_repeat 1 30 0 7189 127 10 10 chr1 208866788 208868856 -33795497 + L1MA1 LINE L1 4235 6302 0 305 284 67 8 chr1 208869085 208869219 -33795134 - L1MC/D LINE L1 -1976 5832 5691 303 269 35 3 chr1 208869258 208869361 -33794992 - L1MC/D LINE L1 -742 5561 5483 309 344 11 0 chr1 208869896 208869989 -33794364 - MIR SINE MIR -110 152 59 529 258 32 13 chr1 208870179 208870334 -33794019 + MER117 DNA MER1_type 1 158 -39 348 200 163 0 chr1 208870571 208870651 -33793702 + L2 LINE L2 3220 3312 -1 238 260 208 0 chr1 208870952 208871029 -33793324 + L2 LINE L2 3141 3233 -39 373 248 21 71 chr1 208872648 208872703 -33791650 + MER94 DNA DNA 1 57 -77 2241 114 0 3 chr1 208872703 208873001 -33791352 + AluSg SINE Alu 5 301 -9 373 248 21 71 chr1 208873001 208873086 -33791267 + MER94 DNA DNA 57 134 0 2016 121 14 0 chr1 208873294 208873583 -33790770 + AluSc SINE Alu 16 308 -1 862 297 111 42 chr1 208874686 208875191 -33789162 - MLT1H LTR MaLR -2 547 8 426 299 16 21 chr1 208875196 208875390 -33788963 - L1MDa LINE L1 -3568 2814 2622 1160 126 51 11 chr1 208875531 208875706 -33788647 + AluSx SINE Alu 1 182 -130 260 201 75 42 chr1 208875707 208875808 -33788545 - L1MDa LINE L1 -4634 1748 1666 315 403 48 9 chr1 208875840 208876071 -33788282 - L1MDa LINE L1 -4895 1489 1250 222 91 0 0 chr1 208876415 208876448 -33787905 + (TG)n Simple_repeat Simple_repeat 1 33 0 188 303 57 0 chr1 208877891 208877969 -33786384 - MIR SINE MIR -80 128 46 1602 209 30 41 chr1 208878099 208878468 -33785885 + MLT1A1 LTR MaLR 1 365 0 238 77 26 0 chr1 208880915 208880954 -33783399 + MADE1 DNA Mariner 1 40 -40 184 20 59 59 chr1 208882546 208882597 -33781756 + (CTATT)n Simple_repeat Simple_repeat 5 55 0 318 340 0 53 chr1 208883463 208883613 -33780740 + MIR SINE MIR 58 199 -63 308 208 0 42 chr1 208884840 208884912 -33779441 - LTR40b LTR ERVL -1 461 393 189 182 0 0 chr1 208884918 208884973 -33779380 + (TA)n Simple_repeat Simple_repeat 2 56 0 262 322 74 8 chr1 208885021 208885142 -33779211 - LTR40a LTR ERVL -147 372 244 251 175 193 79 chr1 208885355 208885469 -33778884 - LTR40b LTR ERVL -335 127 1 1362 191 66 31 chr1 208886476 208886764 -33777589 + AluJo SINE Alu 1 298 -14 314 273 27 36 chr1 208887091 208887201 -33777152 + LTR67 LTR ERVL 113 221 -336 279 0 0 0 chr1 208887605 208887636 -33776717 + (CA)n Simple_repeat Simple_repeat 2 32 0 516 202 58 64 chr1 208888545 208888718 -33775635 + L2 LINE L2 3142 3313 0 4851 177 19 13 chr1 208889212 208890271 -33774082 + L1MB5 LINE L1 5103 6166 -8 706 234 43 21 chr1 208890424 208890612 -33773741 - L2 LINE L2 -7 3306 3115 1304 276 75 26 chr1 208890662 208891165 -33773188 - L2 LINE L2 -1119 2195 1668 298 294 171 0 chr1 208891460 208891606 -33772747 + MIR SINE MIR 91 261 -1 516 244 0 0 chr1 208891957 208892121 -33772232 + (TG)n Simple_repeat Simple_repeat 2 165 0 1006 188 0 0 chr1 208892987 208893147 -33771206 + AluJo SINE Alu 123 282 -30 189 74 0 0 chr1 208893150 208893177 -33771176 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 698 299 41 41 chr1 208893423 208893741 -33770612 - LTR16A LTR ERVL 0 450 133 710 327 111 34 chr1 208894477 208895097 -33769256 + L2 LINE L2 1917 2584 -730 273 128 0 0 chr1 208895558 208895597 -33768756 - MADE1 DNA Mariner -41 39 1 3064 149 30 24 chr1 208895846 208896139 -33768214 - MER34B LTR ERV1 -18 547 248 2329 91 0 10 chr1 208896139 208896446 -33767907 - AluY SINE Alu -7 304 1 3064 149 30 24 chr1 208896446 208896695 -33767658 - MER34B LTR ERV1 -317 248 2 202 241 133 0 chr1 208898495 208898578 -33765775 + MIR SINE MIR 62 155 -107 2418 78 0 0 chr1 208900086 208900380 -33763973 - AluY SINE Alu -17 294 1 707 281 72 14 chr1 208900800 208901021 -33763332 + MIR SINE MIR 19 252 -10 193 304 18 0 chr1 208901833 208901889 -33762464 + MIR SINE MIR 9 65 -197 428 322 122 32 chr1 208902033 208902502 -33761851 + L2 LINE L2 2703 3292 -21 32 75 0 0 chr1 208902506 208902573 -33761780 + AT_rich Low_complexity Low_complexity 1 67 0 414 301 134 11 chr1 208903079 208903268 -33761085 + MIR SINE MIR 21 235 -27 348 43 0 0 chr1 208904306 208904352 -33760001 + (TTA)n Simple_repeat Simple_repeat 3 48 0 8506 25 0 0 chr1 208904352 208906107 -33758246 - L1PA3 LINE L1 -18 6137 4384 1540 28 0 0 chr1 208906107 208906285 -33758068 + L1P LINE L1 4057 4234 -1912 592 301 46 21 chr1 208906714 208906953 -33757400 - MIR SINE MIR 0 262 18 1241 61 30 0 chr1 208907245 208907410 -33756943 - L1PA7 LINE L1 -4 6150 5981 242 238 0 0 chr1 208908109 208908172 -33756181 + L1MC4 LINE L1 6640 6702 -1340 * 250 167 0 0 chr1 208908149 208908191 -33756162 - L1MC4 LINE L1 -1339 6703 6662 871 279 113 38 chr1 208908313 208908657 -33755696 + MLT1K LTR MaLR 149 518 -70 185 256 0 47 chr1 208908705 208908748 -33755605 + MIR SINE MIR 111 151 -57 229 189 38 0 chr1 208911922 208911991 -33752362 + (TA)n Simple_repeat Simple_repeat 1 71 0 1574 114 25 29 chr1 208912009 208912282 -33752071 - AluSg SINE Alu 0 310 39 912 143 0 0 chr1 208912283 208912416 -33751937 - AluJb SINE Alu -179 133 1 498 326 62 37 chr1 208912946 208913188 -33751165 - MIR SINE MIR -7 255 8 2177 113 0 0 chr1 208913234 208913517 -33750836 + AluSx SINE Alu 4 286 -26 185 0 40 0 chr1 208913520 208913545 -33750808 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 186 133 0 0 chr1 208914272 208914302 -33750051 + (TC)n Simple_repeat Simple_repeat 2 31 0 2116 132 7 3 chr1 208914331 208914641 -33749712 - AluSx SINE Alu -1 311 1 2224 97 3 17 chr1 208915484 208915783 -33748570 + AluSg SINE Alu 1 295 -15 200 35 35 0 chr1 208916130 208916159 -33748194 + (TC)n Simple_repeat Simple_repeat 1 30 0 277 305 86 31 chr1 208916468 208916596 -33747757 + MIR3 SINE MIR 70 204 -4 647 308 163 18 chr1 208916725 208917173 -33747180 + L2 LINE L2 1917 2429 -885 21 71 0 0 chr1 208917406 208917448 -33746905 + AT_rich Low_complexity Low_complexity 1 42 0 348 329 101 24 chr1 208917464 208917792 -33746561 + L1ME LINE L1 5463 5815 -306 896 227 73 37 chr1 208918737 208919167 -33745186 - MER39 LTR ERV1 -2 644 92 325 248 40 10 chr1 208919208 208919309 -33745044 - MER34 LTR ERV1 -430 112 9 2253 114 7 0 chr1 208920322 208920629 -33743724 - AluSc SINE Alu 0 309 1 225 0 0 0 chr1 208920634 208920659 -33743694 + (T)n Simple_repeat Simple_repeat 1 25 0 439 342 107 8 chr1 208922420 208922535 -33741818 - MIR SINE MIR 0 262 160 3753 143 12 66 chr1 208922535 208923265 -33741088 - LTR8 LTR ERV1 0 691 1 439 342 107 8 chr1 208923265 208923383 -33740970 - MIR SINE MIR -102 160 6 21 57 0 0 chr1 208924082 208924117 -33740236 + AT_rich Low_complexity Low_complexity 1 35 0 454 202 59 152 chr1 208924377 208924568 -33739785 + MIR SINE MIR 59 229 -33 516 259 34 91 chr1 208925773 208926036 -33738317 - MLT1K LTR MaLR -22 566 319 1857 162 10 3 chr1 208926218 208926514 -33737839 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr1 208926531 208926554 -33737799 + AT_rich Low_complexity Low_complexity 1 23 0 1760 170 58 6 chr1 208926742 208927089 -33737264 + MLT1A1 LTR MaLR 1 365 0 2266 145 18 28 chr1 208928893 208929285 -33735068 - MLT1B LTR MaLR -2 388 1 24 32 0 0 chr1 208930367 208930398 -33733955 + AT_rich Low_complexity Low_complexity 1 31 0 2505 70 0 0 chr1 208930711 208931012 -33733341 - AluY SINE Alu -10 301 1 233 304 14 0 chr1 208931254 208931323 -33733030 - L2 LINE L2 -1 3312 3243 1445 199 67 42 chr1 208931857 208932213 -33732140 + MLT1A1 LTR MaLR 1 365 0 1545 165 102 6 chr1 208932830 208933163 -33731190 - MLT1A1 LTR MaLR 0 365 1 30 0 0 0 chr1 208933676 208933706 -33730647 + AT_rich Low_complexity Low_complexity 1 30 0 1892 144 3 3 chr1 208933724 208934037 -33730316 - L1PB1 LINE L1 -21 6130 5818 209 339 71 18 chr1 208935366 208935478 -33728875 - MIR SINE MIR -111 151 34 1764 193 84 23 chr1 208935722 208936152 -33728201 - LTR40b LTR ERVL 0 462 7 194 375 89 13 chr1 208936183 208936418 -33727935 + L2 LINE L2 2808 3060 -212 1942 244 47 8 chr1 208936435 208936923 -33727430 - LTR40a LTR ERVL -12 507 1 233 271 51 0 chr1 208937307 208937366 -33726987 + L2 LINE L2 3235 3296 -17 23 0 0 0 chr1 208937645 208937668 -33726685 + AT_rich Low_complexity Low_complexity 1 23 0 225 364 11 0 chr1 208937988 208938076 -33726277 + LTR67 LTR ERVL 125 213 -344 347 301 104 16 chr1 208938191 208938384 -33725969 + LTR67 LTR ERVL 348 557 0 221 316 8 68 chr1 208939020 208939153 -33725200 + MIR SINE MIR 28 152 -110 2340 82 17 0 chr1 208939153 208939447 -33724906 - AluSp SINE Alu -14 299 1 5629 174 19 2 chr1 208939460 208940590 -33723763 - L1MC1 LINE L1 0 6333 5186 1919 169 19 78 chr1 208941698 208942119 -33722234 - MSTD LTR MaLR 0 396 1 464 245 147 12 chr1 208943337 208943500 -33720853 + MIR SINE MIR 78 262 0 2201 117 3 16 chr1 208944002 208944318 -33720035 + AluSx SINE Alu 1 312 0 359 339 8 8 chr1 208945187 208945317 -33719036 - MIR SINE MIR -127 135 6 368 291 193 28 chr1 208946750 208947035 -33717318 + L2 LINE L2 2453 2784 -530 318 276 73 32 chr1 208947364 208947487 -33716866 + L2 LINE L2 3137 3264 -8 355 343 9 9 chr1 208950469 208950577 -33713776 - L2 LINE L2 0 3272 3165 698 256 18 62 chr1 208950912 208951139 -33713214 + MIR SINE MIR 28 244 -18 832 181 66 0 chr1 208953385 208953551 -33710802 + MER20 DNA MER1_type 43 219 0 2233 136 43 5 chr1 208953992 208954368 -33709985 + MLT1B LTR MaLR 1 390 0 1101 156 22 11 chr1 208954605 208954784 -33709569 + MER5A DNA MER1_type 2 182 -7 224 257 149 0 chr1 208955388 208955462 -33708891 - MIR SINE MIR -80 182 98 2250 135 6 6 chr1 208955521 208955876 -33708477 + THE1A LTR MaLR 1 355 0 11050 91 25 13 chr1 208955876 208957344 -33707009 + THE1A-int LTR MaLR 1 1491 -89 2281 83 0 20 chr1 208957344 208957645 -33706708 - AluY SINE Alu -16 295 1 11050 91 25 13 chr1 208957645 208957737 -33706616 + THE1A-int LTR MaLR 1491 1580 0 2435 103 8 8 chr1 208957741 208958092 -33706261 + THE1A LTR MaLR 5 355 0 198 103 0 0 chr1 208958771 208958800 -33705553 + (TG)n Simple_repeat Simple_repeat 2 30 0 466 276 22 41 chr1 208959299 208959567 -33704786 + HAL1 LINE L1 1131 1393 -1114 307 303 85 85 chr1 208959654 208959834 -33704519 + HAL1 LINE L1 1541 1744 -763 198 0 0 0 chr1 208959834 208959856 -33704497 + (A)n Simple_repeat Simple_repeat 1 22 0 307 303 85 85 chr1 208959856 208959925 -33704428 + HAL1 LINE L1 1743 1811 -696 948 194 23 14 chr1 208960293 208960509 -33703844 - L1PA13 LINE L1 -4 6159 5942 2526 275 99 38 chr1 208960537 208961790 -33702563 + L2 LINE L2 1981 3309 -4 1425 223 30 17 chr1 208962011 208962312 -33702041 - AluJb SINE Alu -3 309 5 434 248 10 10 chr1 208962478 208962579 -33701774 + MER5A DNA MER1_type 18 118 -71 260 290 43 11 chr1 208962579 208962672 -33701681 + L2 LINE L2 419 514 -2800 207 100 0 0 chr1 208962690 208962720 -33701633 + (CAT)n Simple_repeat Simple_repeat 1 30 0 2975 283 116 37 chr1 208962797 208964100 -33700253 + L2 LINE L2 1682 3117 -196 1975 147 7 3 chr1 208964100 208964406 -33699947 - AluSx SINE Alu -5 307 1 2975 283 116 37 chr1 208964406 208964611 -33699742 + L2 LINE L2 3117 3304 -9 1570 196 138 0 chr1 208965014 208965361 -33698992 + MSTD LTR MaLR 2 396 0 523 193 35 21 chr1 208966616 208966761 -33697592 + MER96B DNA MER1_type? 77 223 -194 675 234 34 39 chr1 208966870 208967075 -33697278 - MIR SINE MIR -2 260 57 3082 123 0 63 chr1 208967493 208968094 -33696259 + MER1A DNA MER1_type 3 529 0 224 232 0 0 chr1 208968758 208968814 -33695539 + A-rich Low_complexity Low_complexity 1 56 0 261 246 0 31 chr1 208969387 208969452 -33694901 + MIR SINE MIR 65 127 -81 231 245 21 106 chr1 208969531 208969625 -33694728 - L2 LINE L2 0 3272 3187 2077 120 0 0 chr1 208970288 208970631 -33693722 + AluSq SINE Alu 1 343 0 366 229 28 71 chr1 208971121 208971277 -33693076 - MIR SINE MIR -62 146 50 198 288 0 17 chr1 208971272 208971331 -33693022 - L2 LINE L2 -4 3309 3252 * 1015 121 0 0 chr1 208971770 208971919 -33692434 - AluSp/q SINE Alu -9 304 156 2123 125 6 10 chr1 208972163 208972476 -33691877 + AluSx SINE Alu 1 312 0 290 286 8 8 chr1 208972613 208972739 -33691614 + (TA)n Simple_repeat Simple_repeat 1 126 0 315 325 26 32 chr1 208972741 208972895 -33691458 - LTR16C LTR ERVL 0 491 339 493 237 118 75 chr1 208974411 208974639 -33689714 + MER102a DNA MER1_type 92 329 -1 564 301 121 64 chr1 208975074 208975496 -33688857 + MLT1H LTR MaLR 104 549 0 2010 135 0 7 chr1 208976550 208976884 -33687469 - AluSx SINE Alu 0 312 4 231 244 0 0 chr1 208977158 208977199 -33687154 + L2 LINE L2 3255 3295 -18 201 175 0 0 chr1 208977872 208977912 -33686441 + (TG)n Simple_repeat Simple_repeat 1 40 0 192 77 0 0 chr1 208978349 208978375 -33685978 + (TTCTC)n Simple_repeat Simple_repeat 4 29 0 245 148 0 56 chr1 208980059 208980113 -33684240 + L2 LINE L2 3263 3313 0 369 0 0 0 chr1 208980386 208980427 -33683926 + (TA)n Simple_repeat Simple_repeat 1 41 0 1098 135 0 0 chr1 208980438 208980616 -33683737 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 89 0 0 chr1 208981205 208981261 -33683092 + AT_rich Low_complexity Low_complexity 1 56 0 222 273 106 0 chr1 208981723 208981789 -33682564 + L3 LINE CR1 1377 1449 -128 496 278 101 27 chr1 208981806 208982041 -33682312 + MIR SINE MIR 11 257 -5 209 314 0 29 chr1 208982022 208982092 -33682261 + L3 LINE CR1 1508 1575 -2 * 402 21 0 0 chr1 208984249 208984296 -33680057 + (TG)n Simple_repeat Simple_repeat 2 48 0 213 203 27 14 chr1 208984336 208984410 -33679943 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 2719 194 63 75 chr1 208984425 208984687 -33679666 - L1ME1 LINE L1 -18 6148 5884 1799 149 10 7 chr1 208984687 208984982 -33679371 - AluJo SINE Alu -16 296 1 2339 79 0 10 chr1 208984992 208985296 -33679057 - AluSc SINE Alu -8 301 1 2719 194 63 75 chr1 208985296 208985851 -33678502 - L1ME1 LINE L1 -291 5875 5330 1305 138 4 52 chr1 208985852 208986083 -33678270 - AluJo SINE Alu -3 309 90 3380 263 44 57 chr1 208986103 208987815 -33676538 - L1ME1 LINE L1 -824 5322 3632 247 297 165 0 chr1 208988377 208988468 -33675885 + MIR SINE MIR 3 108 -154 231 343 211 0 chr1 208989289 208989464 -33674889 + L1MEd LINE L1 561 772 -5347 407 228 141 24 chr1 208989467 208989633 -33674720 + L1MEd LINE L1 945 1098 -5021 5999 138 33 5 chr1 208989648 208991212 -33673141 + L1MA8 LINE L1 4682 6284 -7 254 169 0 96 chr1 208991454 208991537 -33672816 + L1MC4a LINE L1 6597 6671 -1137 673 204 55 84 chr1 208991575 208991884 -33672469 + L1MC5 LINE L1 6676 6975 -986 597 317 60 30 chr1 208992003 208992303 -33672050 - L2 LINE L2 -424 2890 2582 384 264 71 121 chr1 208993485 208993765 -33670588 - MARNA DNA Mariner -177 409 144 1621 193 10 3 chr1 208993787 208994077 -33670276 - AluSx SINE Alu -20 292 1 26 50 0 0 chr1 208994344 208994384 -33669969 + AT_rich Low_complexity Low_complexity 1 40 0 2571 210 28 20 chr1 208994639 208994891 -33669462 + MLT2B3 LTR ERVL 1 250 -304 2456 51 0 13 chr1 208994891 208995202 -33669151 - AluY SINE Alu -4 307 1 2571 210 28 20 chr1 208995202 208995460 -33668893 + MLT2B3 LTR ERVL 250 518 -36 341 74 0 19 chr1 208995460 208995514 -33668839 + (TCTA)n Simple_repeat Simple_repeat 3 55 0 2571 210 28 20 chr1 208995514 208995545 -33668808 + MLT2B3 LTR ERVL 518 547 -7 189 0 0 0 chr1 208998051 208998072 -33666281 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr1 208998299 208998319 -33666034 + (T)n Simple_repeat Simple_repeat 1 20 0 558 330 53 18 chr1 208998419 208998646 -33665707 + MIR SINE MIR 15 249 -13 941 306 110 19 chr1 208998997 208999589 -33664764 - L1MC4a LINE L1 -1897 5911 5266 433 296 116 29 chr1 208999753 209000098 -33664255 - L1MC4a LINE L1 -1129 5017 4643 21 0 0 0 chr1 209000226 209000247 -33664106 + AT_rich Low_complexity Low_complexity 1 21 0 406 318 80 39 chr1 209000475 209001013 -33663340 - L1MC4a LINE L1 -1870 4276 3717 469 286 63 63 chr1 209001293 209001458 -33662895 - L1MC4a LINE L1 -2779 3367 3203 2227 102 7 0 chr1 209001458 209001785 -33662568 + AluSq SINE Alu 1 313 0 469 286 63 63 chr1 209001785 209001997 -33662356 - L1MC4a LINE L1 -2942 3204 2990 978 225 44 24 chr1 209002017 209002310 -33662043 - L1ME2 LINE L1 -22 6142 5844 2498 157 52 33 chr1 209002313 209002834 -33661519 - L1MC1 LINE L1 -5 6608 6078 255 171 27 14 chr1 209002863 209003009 -33661344 + (TA)n Simple_repeat Simple_repeat 2 149 0 24 0 0 0 chr1 209003036 209003060 -33661293 + AT_rich Low_complexity Low_complexity 1 24 0 284 185 31 0 chr1 209003086 209003151 -33661202 + L1MC1 LINE L1 5853 5919 -414 * 3781 191 43 30 chr1 209003122 209003895 -33660458 - L1MC1 LINE L1 -524 6089 5328 1892 151 0 39 chr1 209003895 209004200 -33660153 - AluJb SINE Alu -19 293 1 3781 191 43 30 chr1 209004200 209004838 -33659515 - L1MC1 LINE L1 -1285 5328 4657 662 213 198 0 chr1 209004838 209005035 -33659318 + MER46A DNA MER2_type 1 236 0 3781 191 43 30 chr1 209005035 209005182 -33659171 - L1MC1 LINE L1 -1956 4657 4513 8928 151 118 52 chr1 209005184 209005481 -33658872 - L1MC1 LINE L1 -4169 2257 1981 1798 166 7 7 chr1 209005481 209005783 -33658570 + AluJo SINE Alu 4 305 -7 8928 151 118 52 chr1 209005783 209007584 -33656769 - L1MC1 LINE L1 -4445 1981 21 1218 253 35 19 chr1 209007601 209007972 -33656381 - L1ME2 LINE L1 -331 5833 5457 636 257 12 6 chr1 209007969 209008140 -33656213 - L1ME2 LINE L1 -1213 4933 4762 * 3429 259 65 13 chr1 209008142 209009257 -33655096 - L1MC3 LINE L1 -1125 6660 5487 4155 258 60 45 chr1 209009266 209011272 -33653081 - L1MC3 LINE L1 -854 5292 3256 339 345 48 0 chr1 209013473 209013618 -33650735 + MIR SINE MIR 25 176 -86 558 299 13 13 chr1 209013622 209013779 -33650574 - MIR SINE MIR -75 187 31 234 281 0 45 chr1 209013808 209013897 -33650456 + MIR SINE MIR 63 147 -115 207 263 12 75 chr1 209014026 209014106 -33650247 + MIR SINE MIR 50 124 -84 655 290 23 0 chr1 209014547 209014723 -33649630 + MIR SINE MIR 62 241 -21 2253 135 3 3 chr1 209015177 209015510 -33648843 - THE1B LTR MaLR 0 364 32 4026 142 20 8 chr1 209016470 209017175 -33647178 + L1MB3 LINE L1 5463 6175 -8 328 288 93 44 chr1 209017279 209017505 -33646848 + HAL1 LINE L1 1151 1387 -1120 223 224 86 0 chr1 209017820 209017878 -33646475 + MIR SINE MIR 95 157 -105 312 27 0 0 chr1 209018143 209018180 -33646173 + (TG)n Simple_repeat Simple_repeat 1 37 0 2275 64 0 49 chr1 209018241 209018568 -33645785 + AluY SINE Alu 1 311 0 24 0 0 0 chr1 209019038 209019062 -33645291 + AT_rich Low_complexity Low_complexity 1 24 0 603 261 28 68 chr1 209020604 209020883 -33643470 - MIR SINE MIR -14 248 15 277 340 53 0 chr1 209022050 209022144 -33642209 + MER91 DNA MER1_type 43 141 -55 3336 216 45 20 chr1 209022154 209023668 -33640685 - L1MD2 LINE L1 -496 5863 4318 388 312 8 16 chr1 209023750 209023875 -33640478 - L2 LINE L2 -6 3307 3184 1850 227 57 62 chr1 209024163 209024425 -33639928 - MER90 LTR ERV1 0 575 313 732 247 48 0 chr1 209024425 209024591 -33639762 - FAM SINE Alu 0 175 2 1850 227 57 62 chr1 209024591 209024906 -33639447 - MER90 LTR ERV1 -262 313 1 535 342 53 22 chr1 209024915 209025242 -33639111 - L2 LINE L2 -250 3063 2729 640 246 57 75 chr1 209025333 209025614 -33638739 - L2 LINE L2 0 3313 3038 636 326 95 25 chr1 209025611 209025859 -33638494 - L2 LINE L2 -546 2768 2484 * 950 184 73 10 chr1 209025859 209026065 -33638288 + MER20 DNA MER1_type 1 219 0 636 326 95 25 chr1 209026065 209026184 -33638169 - L2 LINE L2 -830 2484 2375 309 115 19 0 chr1 209026443 209026495 -33637858 - L1PA10 LINE L1 -5 6163 6111 1793 117 0 0 chr1 209027081 209027330 -33637023 + AluSx SINE Alu 45 293 -19 2214 103 3 10 chr1 209029465 209029765 -33634588 + AluSp SINE Alu 1 298 -15 180 111 0 0 chr1 209029920 209029947 -33634406 + (A)n Simple_repeat Simple_repeat 1 27 0 811 170 0 15 chr1 209030036 209030171 -33634182 - FLAM_C SINE Alu 0 133 1 325 345 141 5 chr1 209031148 209031354 -33632999 + MIR SINE MIR 2 235 -27 220 232 18 0 chr1 209031355 209031411 -33632942 + (ATG)n Simple_repeat Simple_repeat 3 59 0 466 316 201 33 chr1 209031837 209032350 -33632003 + L2 LINE L2 2460 3069 -244 525 257 0 0 chr1 209032434 209032586 -33631767 + (TA)n Simple_repeat Simple_repeat 1 152 0 324 336 0 22 chr1 209032588 209032725 -33631628 + L2 LINE L2 3173 3306 -7 24 0 0 0 chr1 209034313 209034337 -33630016 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 209035163 209035184 -33629169 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 209035407 209035429 -33628924 + AT_rich Low_complexity Low_complexity 1 22 0 266 339 96 17 chr1 209036669 209036846 -33627507 - L2 LINE L2 -535 2779 2589 294 156 0 0 chr1 209037721 209037785 -33626568 + (TG)n Simple_repeat Simple_repeat 2 65 0 676 223 16 0 chr1 209039264 209039385 -33624968 + FLAM_A SINE Alu 1 123 -10 2248 87 0 0 chr1 209039387 209039686 -33624667 + L1PA7 LINE L1 5850 6148 -6 23 97 0 0 chr1 209040306 209040378 -33623975 + AT_rich Low_complexity Low_complexity 1 72 0 311 93 53 40 chr1 209040644 209040719 -33623634 + L1MA4A LINE L1 6223 6298 -5 22 0 0 0 chr1 209040726 209040748 -33623605 + AT_rich Low_complexity Low_complexity 1 22 0 1814 121 0 12 chr1 209041034 209041290 -33623063 + AluSx SINE Alu 39 291 -21 479 294 206 9 chr1 209042980 209043194 -33621159 - MIR SINE MIR 0 262 7 2516 108 0 42 chr1 209043470 209043543 -33620810 - THE1B LTR MaLR 0 364 289 2342 92 0 19 chr1 209043543 209043860 -33620493 + AluY SINE Alu 1 311 0 2516 108 0 42 chr1 209043860 209044166 -33620187 - THE1B LTR MaLR -75 289 1 27 73 0 0 chr1 209044369 209044424 -33619929 + AT_rich Low_complexity Low_complexity 1 55 0 524 214 48 0 chr1 209045354 209045499 -33618854 - MER96B DNA MER1_type? -238 179 28 1284 115 6 0 chr1 209045620 209045796 -33618557 - THE1B LTR MaLR 0 364 188 617 307 143 27 chr1 209045796 209046089 -33618264 + MER102b DNA MER1_type 1 327 -14 222 283 206 0 chr1 209046156 209046248 -33618105 - L2 LINE L2 -3 3310 3200 1666 165 55 84 chr1 209046267 209046741 -33617612 + MLT1C LTR MaLR 1 460 -7 282 370 25 39 chr1 209046860 209047063 -33617290 - L2 LINE L2 -214 3058 2859 * 365 265 202 16 chr1 209047040 209047257 -33617096 + MIR SINE MIR 8 262 0 207 319 43 43 chr1 209047288 209047473 -33616880 - L2 LINE L2 -494 2820 2636 353 175 16 0 chr1 209097565 209097628 -33566725 + MSTB LTR MaLR 363 426 0 1011 220 126 34 chr1 209097647 209098061 -33566292 + Charlie7 DNA MER1_type 2158 2609 -3 390 307 39 70 chr1 209098070 209098428 -33565925 - L2 LINE L2 -640 2674 2328 251 346 49 0 chr1 209098865 209098946 -33565407 + L2 LINE L2 3168 3252 -20 801 122 30 56 chr1 209099997 209100194 -33564159 + Charlie5 DNA MER1_type 2425 2616 0 316 233 28 33 chr1 209100223 209100403 -33563950 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 1764 158 10 14 chr1 209101920 209102217 -33562136 - AluJb SINE Alu -16 296 1 2104 138 135 5 chr1 209102296 209102674 -33561679 + MSTA LTR MaLR 1 427 -1 22 0 0 0 chr1 209102838 209102860 -33561493 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr1 209103076 209103130 -33561223 + AT_rich Low_complexity Low_complexity 1 54 0 2174 118 0 7 chr1 209103137 209103434 -33560919 - AluSq SINE Alu -18 295 1 1367 311 47 33 chr1 209105081 209105915 -33558438 - L2 LINE L2 0 3313 2462 239 329 14 0 chr1 209106124 209106197 -33558156 + L2 LINE L2 3199 3272 0 2114 119 3 31 chr1 209106393 209106712 -33557641 - AluSx SINE Alu -2 310 1 391 259 69 9 chr1 209107574 209107690 -33556663 - L2 LINE L2 -1 3312 3190 202 296 0 0 chr1 209107709 209107763 -33556590 - MIR SINE MIR -33 229 176 184 206 132 29 chr1 209107757 209107825 -33556528 + MIR3 SINE MIR 129 203 -5 * 306 50 0 0 chr1 209108669 209108709 -33555644 + (TC)n Simple_repeat Simple_repeat 1 40 0 1191 238 55 33 chr1 209109038 209109403 -33554950 - MLT1C LTR MaLR 0 467 95 1893 134 33 0 chr1 209109417 209109714 -33554639 - AluSx SINE Alu 0 306 1 23 0 0 0 chr1 209109729 209109752 -33554601 + AT_rich Low_complexity Low_complexity 1 23 0 7236 31 9 1 chr1 209109752 209110616 -33553737 - L1PA5 LINE L1 -8 6146 5276 9497 40 4 0 chr1 209110716 209111875 -33552478 - L1PA5 LINE L1 -1085 5061 3898 444 135 68 0 chr1 209111875 209111949 -33552404 - MLT1C LTR MaLR -388 79 1 23 0 0 0 chr1 209112003 209112026 -33552327 + AT_rich Low_complexity Low_complexity 1 23 0 5364 129 8 0 chr1 209112151 209112985 -33551368 - L1PA16 LINE L1 -9 6157 5317 * 18401 184 66 14 chr1 209112980 209114361 -33549992 - L1PA11 LINE L1 -1 6876 5569 255 61 0 0 chr1 209114361 209114394 -33549959 + (TA)n Simple_repeat Simple_repeat 2 34 0 18401 184 66 14 chr1 209114394 209119499 -33544854 - L1PA11 LINE L1 -1308 5569 1 2593 94 42 3 chr1 209120751 209121112 -33543241 - THE1C LTR MaLR 0 375 1 1225 202 96 7 chr1 209122431 209122703 -33541650 + AluJo SINE Alu 1 296 -6 1777 150 4 4 chr1 209123259 209123539 -33540814 - AluJo SINE Alu -6 306 27 665 119 0 28 chr1 209124061 209124170 -33540183 + FRAM SINE Alu 71 176 0 180 111 0 0 chr1 209127205 209127232 -33537121 + (T)n Simple_repeat Simple_repeat 1 27 0 2069 135 3 0 chr1 209127244 209127540 -33536813 + AluSx SINE Alu 1 297 -15 36 62 0 0 chr1 209131386 209131450 -33532903 + AT_rich Low_complexity Low_complexity 1 64 0 218 217 0 0 chr1 209131589 209131635 -33532718 + T-rich Low_complexity Low_complexity 1 46 0 24 67 0 0 chr1 209131644 209131689 -33532664 + AT_rich Low_complexity Low_complexity 1 45 0 2066 130 0 10 chr1 209132329 209132628 -33531725 - AluSx SINE Alu -16 296 1 1511 154 44 98 chr1 209133492 209133901 -33530452 - MLT1B LTR MaLR -3 387 1 1781 166 4 0 chr1 209133961 209134279 -33530074 + AluSx SINE Alu 3 321 0 22 35 0 0 chr1 209135047 209135076 -33529277 + AT_rich Low_complexity Low_complexity 1 29 0 2102 112 30 3 chr1 209135276 209135580 -33528773 + AluSx SINE Alu 1 312 0 546 365 134 14 chr1 209136735 209137385 -33526968 - L2 LINE L2 -505 2809 2082 252 304 14 0 chr1 209137840 209137909 -33526444 - L2 LINE L2 0 3313 3244 402 328 8 8 chr1 209139011 209139142 -33525211 - MIR SINE MIR -130 132 2 338 271 28 19 chr1 209139195 209139302 -33525051 + CT-rich Low_complexity Low_complexity 5 112 0 329 380 25 12 chr1 209139489 209139652 -33524701 + MIR SINE MIR 20 184 -78 2269 58 0 0 chr1 209140034 209140309 -33524044 + AluY SINE Alu 37 311 0 897 276 42 35 chr1 209141327 209141490 -33522863 + MLT1I LTR MaLR 2 162 -247 2302 78 7 17 chr1 209141490 209141784 -33522569 - AluSx SINE Alu -21 291 1 897 276 42 35 chr1 209141784 209142022 -33522331 + MLT1I LTR MaLR 162 406 -3 23 0 0 0 chr1 209142073 209142096 -33522257 + AT_rich Low_complexity Low_complexity 1 23 0 315 279 13 0 chr1 209142680 209142759 -33521594 + MER116 DNA Mariner 1 80 0 2275 131 3 0 chr1 209143490 209143826 -33520527 + MER1B DNA MER1_type 1 337 0 4393 92 34 5 chr1 209144105 209144745 -33519608 + L1PA14 LINE L1 5375 6033 -128 306 263 97 63 chr1 209144865 209144949 -33519404 - HERVL LTR ERVL -2416 3238 3158 2169 137 49 9 chr1 209144949 209145299 -33519054 + THE1B LTR MaLR 1 364 0 306 263 97 63 chr1 209145299 209145389 -33518964 - HERVL LTR ERVL -2496 3158 3058 360 150 56 0 chr1 209145585 209145745 -33518608 + (TA)n Simple_repeat Simple_repeat 1 169 0 780 271 105 24 chr1 209145754 209146195 -33518158 - MER101 LTR ERV1 -68 502 6 3574 304 30 60 chr1 209146245 209146748 -33517605 - HERVL LTR ERVL -2869 2895 2378 2096 118 14 0 chr1 209146748 209147037 -33517316 - AluSq SINE Alu -18 295 3 3574 304 30 60 chr1 209147037 209147811 -33516542 - HERVL LTR ERVL -3386 2378 1673 2456 124 48 69 chr1 209147811 209148335 -33516018 + L1MA9 LINE L1 5800 6312 0 3574 304 30 60 chr1 209148335 209148644 -33515709 - HERVL LTR ERVL -4091 1673 1356 493 344 31 58 chr1 209148788 209149274 -33515079 - HERVL LTR ERVL -4462 1302 830 1629 139 120 6 chr1 209149334 209149658 -33514695 - MER46B DNA MER2_type 0 236 1 356 296 0 17 chr1 209149749 209149864 -33514489 - HERVL LTR ERVL -5154 610 498 1625 266 155 6 chr1 209150441 209150917 -33513436 - LTR50 LTR ERVL 0 795 183 423 0 0 0 chr1 209150917 209150964 -33513389 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1625 266 155 6 chr1 209150964 209151179 -33513174 - LTR50 LTR ERVL -612 183 1 539 313 11 17 chr1 209151799 209151978 -33512375 - MER5B DNA MER1_type 0 178 1 418 266 99 68 chr1 209152208 209152288 -33512065 + MIR SINE MIR 5 81 -181 1955 154 0 10 chr1 209152288 209152594 -33511759 + AluSx SINE Alu 1 303 -9 418 266 99 68 chr1 209152594 209152735 -33511618 + MIR SINE MIR 81 233 -29 264 317 89 24 chr1 209152791 209152914 -33511439 + L2 LINE L2 3182 3312 -1 3345 146 56 10 chr1 209153130 209153269 -33511084 + L1MA5A LINE L1 5644 5775 -522 189 0 0 0 chr1 209153269 209153290 -33511063 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 378 0 0 0 chr1 209153289 209153331 -33511022 + (CA)n Simple_repeat Simple_repeat 2 43 0 3345 146 56 10 chr1 209153290 209153573 -33510780 + L1MA5A LINE L1 5775 6068 -229 2175 116 3 0 chr1 209153573 209153866 -33510487 + AluSp SINE Alu 1 294 -19 3345 146 56 10 chr1 209153866 209154108 -33510245 + L1MA5A LINE L1 6068 6297 0 229 196 0 22 chr1 209154207 209154253 -33510100 + GA-rich Low_complexity Low_complexity 1 45 0 186 133 0 0 chr1 209154690 209154720 -33509633 + (CAT)n Simple_repeat Simple_repeat 2 31 0 498 306 142 17 chr1 209155282 209155514 -33508839 + MIR SINE MIR 2 262 0 516 165 8 16 chr1 209155561 209155688 -33508665 + CT-rich Low_complexity Low_complexity 1 126 0 266 309 51 83 chr1 209155688 209155905 -33508448 - L2 LINE L2 -10 3303 3094 199 277 0 0 chr1 209156258 209156305 -33508048 - MIR SINE MIR -65 143 97 191 271 106 0 chr1 209156303 209156388 -33507965 + MIR SINE MIR 116 209 -53 * 638 187 166 45 chr1 209159171 209159368 -33504985 - MLT1A2 LTR MaLR 0 390 171 256 91 73 0 chr1 209159418 209159473 -33504880 + T-rich Low_complexity Low_complexity 3 61 0 1714 191 4 0 chr1 209159609 209159881 -33504472 - AluSx SINE Alu -37 275 3 651 220 0 0 chr1 209159916 209160034 -33504319 - FLAM_C SINE Alu -19 124 7 719 155 22 94 chr1 209160039 209160220 -33504133 - MLT1A2 LTR MaLR -206 168 1 23 0 0 0 chr1 209160407 209160430 -33503923 + AT_rich Low_complexity Low_complexity 1 23 0 189 303 67 45 chr1 209161164 209161253 -33503100 + MIR SINE MIR 43 133 -75 27 0 0 0 chr1 209161393 209161420 -33502933 + AT_rich Low_complexity Low_complexity 1 27 0 868 190 5 83 chr1 209161672 209161877 -33502476 + MER5A DNA MER1_type 1 189 0 367 322 25 8 chr1 209161879 209162000 -33502353 + L2 LINE L2 3191 3313 0 583 327 78 46 chr1 209162005 209162439 -33501914 + L3 LINE CR1 642 1089 -488 21 0 0 0 chr1 209162496 209162517 -33501836 + AT_rich Low_complexity Low_complexity 1 21 0 184 352 55 11 chr1 209162525 209162616 -33501737 - L2 LINE L2 -42 3230 3136 406 282 188 22 chr1 209162712 209162946 -33501407 + L3 LINE CR1 1158 1428 -150 28 29 0 0 chr1 209163499 209163534 -33500819 + AT_rich Low_complexity Low_complexity 1 35 0 1035 52 22 0 chr1 209165136 209165271 -33499082 + L1MA1 LINE L1 6165 6302 0 332 337 63 53 chr1 209166815 209167118 -33497235 - L2 LINE L2 -452 2862 2557 180 410 75 21 chr1 209167168 209167634 -33496719 - L2 LINE L2 -592 2722 2232 647 291 43 16 chr1 209169484 209169738 -33494615 + MLT1L LTR MaLR 5 265 -350 330 314 91 17 chr1 209170140 209170315 -33494038 - MIR SINE MIR 0 262 75 742 255 24 67 chr1 209170322 209170577 -33493776 - MIR SINE MIR 0 262 19 475 303 187 44 chr1 209171213 209171698 -33492655 + L2 LINE L2 2739 3301 -12 341 279 25 0 chr1 209173286 209173365 -33490988 + L2 LINE L2 3184 3264 -8 4081 233 32 27 chr1 209173519 209174841 -33489512 + L1MCb LINE L1 7 1340 -4851 27 49 0 0 chr1 209174911 209174952 -33489401 + AT_rich Low_complexity Low_complexity 1 41 0 450 268 32 0 chr1 209174961 209175084 -33489269 - MIR SINE MIR -4 258 132 1988 111 20 10 chr1 209175109 209175407 -33488946 - AluSq SINE Alu 0 313 13 2489 63 0 3 chr1 209175598 209175899 -33488454 + AluY SINE Alu 1 300 -11 198 286 54 80 chr1 209176153 209176265 -33488088 - L2 LINE L2 -18 3295 3187 353 189 0 32 chr1 209177460 209177555 -33486798 - L1MA10 LINE L1 -3 6331 6240 1677 229 98 48 chr1 209177564 209178148 -33486205 - L1ME1 LINE L1 -77 6089 5477 1326 250 115 45 chr1 209178140 209178381 -33485972 + L1MEc LINE L1 866 1089 -5307 * 2071 134 3 3 chr1 209178381 209178686 -33485667 + AluSq SINE Alu 2 306 -7 1326 250 115 45 chr1 209178686 209179313 -33485040 + L1MEc LINE L1 1089 1795 -4601 1582 271 52 21 chr1 209179395 209179930 -33484423 - L1MEc LINE L1 -5801 595 44 4464 62 12 3 chr1 209180734 209181313 -33483040 + L1PA7 LINE L1 5570 6153 -1 422 293 101 23 chr1 209181425 209181670 -33482683 + ERVL LTR ERVL 4881 5141 -513 2267 101 7 0 chr1 209181705 209182013 -33482340 + AluSq SINE Alu 1 310 -3 312 27 0 0 chr1 209182763 209182800 -33481553 + (GA)n Simple_repeat Simple_repeat 1 37 0 311 304 54 18 chr1 209184334 209184446 -33479907 - MLT1H LTR MaLR 0 549 434 367 299 93 21 chr1 209184499 209184693 -33479660 - MLT1H LTR MaLR -206 343 136 1460 320 71 27 chr1 209186088 209187089 -33477264 - L2 LINE L2 -81 3232 2190 222 37 0 0 chr1 209187366 209187393 -33476960 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 209187436 209187466 -33476887 + AT_rich Low_complexity Low_complexity 1 30 0 2137 227 128 37 chr1 209188136 209188841 -33475512 - L1ME1 LINE L1 -7 6553 5785 2642 256 59 40 chr1 209188846 209190312 -33474041 - L1ME1 LINE L1 -1446 5094 3601 547 245 26 26 chr1 209190488 209190680 -33473673 - L1ME1 LINE L1 -3720 2820 2629 1368 184 0 13 chr1 209190680 209190942 -33473411 + AluJb SINE Alu 61 319 0 499 200 90 40 chr1 209190949 209191149 -33473204 - L1ME1 LINE L1 -3907 2633 2424 862 160 0 7 chr1 209191224 209191374 -33472979 - L1PA15 LINE L1 0 6165 6017 24 53 0 0 chr1 209192072 209192110 -33472243 + AT_rich Low_complexity Low_complexity 1 38 0 1368 218 52 20 chr1 209192112 209192461 -33471892 + L1ME1 LINE L1 5796 6155 -11 1655 147 3 39 chr1 209193471 209193757 -33470596 + AluSx SINE Alu 30 305 -7 262 228 33 43 chr1 209194080 209194172 -33470181 + L1ME LINE L1 5593 5683 -438 222 300 29 0 chr1 209194181 209194251 -33470102 + GA-rich Low_complexity Low_complexity 3 74 0 798 35 80 9 chr1 209195222 209195335 -33469018 - L1PA5 LINE L1 0 6154 6034 536 114 0 45 chr1 209195435 209195523 -33468830 - MSTA LTR MaLR -344 84 1 189 0 0 0 chr1 209196516 209196537 -33467816 + (A)n Simple_repeat Simple_repeat 1 21 0 192 375 0 0 chr1 209198368 209198424 -33465929 + L2 LINE L2 3249 3304 -9 2198 85 0 3 chr1 209199570 209199900 -33464453 - AluSc SINE Alu 0 329 1 183 80 0 0 chr1 209200026 209200051 -33464302 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 875 350 102 46 chr1 209200358 209201705 -33462648 - L2 LINE L2 0 3272 1846 661 315 54 0 chr1 209202553 209202756 -33461597 - MIR SINE MIR -16 246 33 431 263 93 17 chr1 209202795 209202821 -33461532 + L1M4 LINE L1 5584 5607 -532 2514 124 3 0 chr1 209202821 209203184 -33461169 - THE1B LTR MaLR 0 364 1 431 263 93 17 chr1 209203184 209203353 -33461000 + L1M4 LINE L1 5607 5790 -349 232 244 356 26 chr1 209203645 209203760 -33460593 - L2 LINE L2 0 3313 3161 309 51 0 0 chr1 209204570 209204609 -33459744 + (CA)n Simple_repeat Simple_repeat 2 40 0 184 329 25 0 chr1 209205145 209205224 -33459129 - MIR SINE MIR -85 177 97 477 0 0 0 chr1 209207163 209207216 -33457137 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 23 0 0 0 chr1 209207796 209207819 -33456534 + AT_rich Low_complexity Low_complexity 1 23 0 1973 89 63 11 chr1 209209680 209209995 -33454358 + AluSx SINE Alu 1 329 0 321 319 201 22 chr1 209210508 209210822 -33453531 + L2 LINE L2 2239 2608 -706 365 299 222 48 chr1 209210933 209211348 -33453005 + L2 LINE L2 2827 3313 0 215 103 26 0 chr1 209211522 209211561 -33452792 + (TG)n Simple_repeat Simple_repeat 1 40 0 676 313 54 0 chr1 209212795 209213035 -33451318 + MIR SINE MIR 5 257 -5 634 285 107 39 chr1 209213113 209213450 -33450903 - MER76 LTR ERV -12 676 317 876 190 17 6 chr1 209213476 209213650 -33450703 - MER76 LTR ERV -512 176 1 211 395 70 0 chr1 209213692 209213877 -33450476 - L2 LINE L2 -557 2757 2560 805 261 170 13 chr1 209214506 209214882 -33449471 + LTR16A1 LTR ERVL 1 435 -22 387 242 0 20 chr1 209215511 209215610 -33448743 - MLT1F1 LTR MaLR -410 157 61 299 246 0 0 chr1 209216997 209217062 -33447291 - LTR16B LTR ERVL -12 452 388 1318 256 85 9 chr1 209217062 209217347 -33447006 - MLT1C LTR MaLR 0 467 136 1795 86 34 15 chr1 209217347 209217614 -33446739 - L1PA8 LINE L1 -2 6170 5899 1318 256 85 9 chr1 209217614 209217762 -33446591 - MLT1C LTR MaLR -331 136 1 764 292 40 58 chr1 209217765 209218162 -33446191 - LTR16B LTR ERVL -74 390 1 1535 346 48 23 chr1 209218255 209219378 -33444975 - ERVL LTR ERVL -390 5374 4224 3748 47 0 0 chr1 209219583 209220048 -33444305 - L1PA4 LINE L1 0 6155 5691 21 0 0 0 chr1 209220306 209220327 -33444026 + AT_rich Low_complexity Low_complexity 1 21 0 186 118 0 0 chr1 209223317 209223351 -33441002 + (A)n Simple_repeat Simple_repeat 1 34 0 2543 64 0 0 chr1 209223808 209224106 -33440247 - AluY SINE Alu -12 299 2 1862 146 11 11 chr1 209224743 209225055 -33439298 - AluSq SINE Alu 0 315 4 207 0 0 0 chr1 209225201 209225224 -33439129 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 285 281 123 35 chr1 209225957 209226071 -33438282 + MIR3 SINE MIR 49 172 -36 182 311 54 40 chr1 209227205 209227279 -33437074 - MIR SINE MIR -6 256 182 26 0 0 0 chr1 209227374 209227400 -33436953 + AT_rich Low_complexity Low_complexity 1 26 0 6935 56 0 2 chr1 209228948 209230107 -33434246 - L1PA7 LINE L1 -2 6152 4988 292 188 181 60 chr1 209230481 209230614 -33433739 + MLT1C LTR MaLR 23 171 -296 280 325 130 30 chr1 209230810 209231010 -33433343 - MIR SINE MIR -20 242 23 489 216 80 28 chr1 209231186 209231362 -33432991 - L1PA16 LINE L1 -6 6160 5976 254 228 18 0 chr1 209231690 209231747 -33432606 - L2 LINE L2 0 3313 3256 22 70 0 0 chr1 209232395 209232438 -33431915 + AT_rich Low_complexity Low_complexity 1 43 0 193 253 101 51 chr1 209232890 209232969 -33431384 - MIR SINE MIR -157 105 23 547 281 6 11 chr1 209233222 209233400 -33430953 - MER5B DNA MER1_type -1 177 1 2575 105 3 6 chr1 209233952 209234313 -33430040 - THE1B LTR MaLR -2 362 3 10482 109 41 6 chr1 209234315 209235841 -33428512 - THE1B-int LTR MaLR 0 1580 1 2553 109 3 35 chr1 209235841 209236217 -33428136 - THE1B LTR MaLR 0 364 1 4754 245 82 21 chr1 209236322 209238285 -33426068 + L1M4 LINE L1 8 2074 -4572 3718 256 28 18 chr1 209238383 209238819 -33425534 + L1M4 LINE L1 2281 2711 -3933 2065 126 14 0 chr1 209238819 209239113 -33425240 + AluSq SINE Alu 1 298 -15 3718 256 28 18 chr1 209239113 209240362 -33423991 + L1M4 LINE L1 2711 3986 -2658 551 179 17 2 chr1 209240370 209240514 -33423839 + L1M3 LINE L1 5366 5511 -655 2576 148 17 0 chr1 209240850 209241269 -33423084 - MSTA LTR MaLR -2 426 1 236 307 67 0 chr1 209241945 209242020 -33422333 + MLT1K LTR MaLR 157 236 -352 217 137 21 105 chr1 209242363 209242458 -33421895 + A-rich Low_complexity Low_complexity 3 89 0 30 59 0 0 chr1 209243660 209243711 -33420642 + AT_rich Low_complexity Low_complexity 1 51 0 597 231 8 8 chr1 209244649 209244770 -33419583 + L2 LINE L2 3192 3312 -1 668 254 36 6 chr1 209245213 209245378 -33418975 - MER5B DNA MER1_type -2 176 7 346 333 65 43 chr1 209246386 209246572 -33417781 - MIR3 SINE MIR -5 203 14 23 54 0 0 chr1 209247955 209247992 -33416361 + AT_rich Low_complexity Low_complexity 1 37 0 3711 93 4 9 chr1 209250376 209250914 -33413439 - L1PA13 LINE L1 -2 6161 5627 352 246 0 0 chr1 209251108 209251173 -33413180 - MIR SINE MIR -68 140 76 2095 101 3 11 chr1 209252804 209253090 -33411263 - AluSx SINE Alu -8 304 21 3287 65 9 7 chr1 209253092 209253539 -33410814 - LTR7 LTR ERV1 -2 448 1 2391 74 45 13 chr1 209253539 209253917 -33410436 - HERVH LTR ERV1 0 7713 7324 1173 128 46 0 chr1 209253917 209254113 -33410240 - HERVH LTR ERV1 -1894 5819 5615 3250 155 4 2 chr1 209254142 209254690 -33409663 - HERVH LTR ERV1 -2564 5149 4601 2671 103 5 9 chr1 209254690 209255109 -33409244 - HERVH LTR ERV1 -3797 3916 3500 757 152 41 0 chr1 209255108 209255253 -33409100 - HERVH LTR ERV1 -4423 3290 3140 * 18521 95 28 19 chr1 209255247 209258208 -33406145 - HERVH LTR ERV1 -4726 2987 1 3344 65 5 7 chr1 209258210 209258659 -33405694 - LTR7 LTR ERV1 -2 448 1 304 302 42 0 chr1 209259533 209259629 -33404724 - LTR33A LTR ERVL -365 158 59 266 324 16 71 chr1 209260614 209260796 -33403557 - L2 LINE L2 -9 3304 3133 1682 241 83 33 chr1 209260842 209261579 -33402774 + L1M4 LINE L1 2891 3664 -2482 21 100 0 0 chr1 209262712 209262782 -33401571 + AT_rich Low_complexity Low_complexity 1 70 0 23 54 0 0 chr1 209263394 209263431 -33400922 + AT_rich Low_complexity Low_complexity 1 37 0 950 202 52 4 chr1 209263683 209263916 -33400437 - L1MB1 LINE L1 -34 6155 5912 930 148 0 31 chr1 209264487 209264649 -33399704 - AluSg/x SINE Alu -2 310 154 24 85 0 0 chr1 209265159 209265218 -33399135 + AT_rich Low_complexity Low_complexity 1 59 0 2404 114 30 87 chr1 209266039 209266511 -33397842 + MER65A LTR ERV1 1 445 0 249 302 0 0 chr1 209266736 209266799 -33397554 + MIR SINE MIR 47 109 -153 2023 266 66 46 chr1 209268598 209269719 -33394634 - L1ME3A LINE L1 0 6170 5017 32546 107 7 51 chr1 209269946 209275979 -33388374 - L1PA7 LINE L1 -6 6148 427 207 0 0 0 chr1 209275979 209276002 -33388351 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 32546 107 7 51 chr1 209276002 209276400 -33387953 - L1PA7 LINE L1 -5727 427 13 2160 272 74 28 chr1 209276408 209277577 -33386776 - L1ME3A LINE L1 -1158 4988 3766 3467 158 37 16 chr1 209277631 209278095 -33386258 - L1MA4A LINE L1 0 6303 5817 1966 162 3 3 chr1 209278095 209278397 -33385956 - AluJb SINE Alu -4 308 7 3467 158 37 16 chr1 209278397 209278639 -33385714 - L1MA4A LINE L1 -486 5817 5582 2151 250 65 39 chr1 209279914 209280880 -33383473 + L2 LINE L2 2267 3263 -50 1226 196 11 39 chr1 209281104 209281384 -33382969 + AluSx SINE Alu 5 276 -36 21 0 0 0 chr1 209282221 209282242 -33382111 + AT_rich Low_complexity Low_complexity 1 21 0 2017 132 32 24 chr1 209282479 209282849 -33381504 - THE1C LTR MaLR -2 373 1 724 286 75 0 chr1 209282849 209283048 -33381305 + MIR SINE MIR 21 234 -28 27 0 0 0 chr1 209283901 209283928 -33380425 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr1 209283948 209283971 -33380382 + AT_rich Low_complexity Low_complexity 1 23 0 216 67 0 0 chr1 209285405 209285435 -33378918 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 258 405 61 6 chr1 209285612 209285775 -33378578 + L2 LINE L2 3092 3263 -9 26 0 0 0 chr1 209286632 209286658 -33377695 + AT_rich Low_complexity Low_complexity 1 26 0 1530 216 3 3 chr1 209286712 209287013 -33377340 - AluJo SINE Alu -11 301 1 313 267 30 7 chr1 209287356 209287491 -33376862 - HAL1 LINE L1 -122 2385 2248 186 291 139 35 chr1 209287584 209287670 -33376683 - MIR3 SINE MIR -3 205 111 201 366 0 14 chr1 209287891 209287962 -33376391 + L2 LINE L2 2677 2746 -568 337 309 21 10 chr1 209287995 209288092 -33376261 - MIR SINE MIR -116 146 49 209 261 37 29 chr1 209288394 209288525 -33375828 + MIR SINE MIR 2 228 -34 200 330 72 21 chr1 209288581 209288678 -33375675 + L2 LINE L2 3168 3269 -3 236 384 91 22 chr1 209288744 209289020 -33375333 - L2 LINE L2 -421 2893 2599 272 333 29 10 chr1 209289179 209289281 -33375072 - MER5A DNA MER1_type -25 164 61 197 267 22 0 chr1 209289645 209289690 -33374663 - L3 LINE CR1 -498 1079 1034 2030 192 36 17 chr1 209289989 209290091 -33374262 + MLT2C2 LTR ERVL 1 100 -364 2007 167 9 67 chr1 209290091 209290510 -33373843 - MSTD LTR MaLR 0 396 2 2030 192 36 17 chr1 209290510 209290828 -33373525 + MLT2C2 LTR ERVL 100 429 -35 396 24 24 49 chr1 209290829 209290911 -33373442 + (TA)n Simple_repeat Simple_repeat 2 81 0 246 179 13 26 chr1 209290987 209291065 -33373288 + (TA)n Simple_repeat Simple_repeat 1 77 0 329 113 21 100 chr1 209291115 209291208 -33373145 + MLT2B2 LTR ERVL 352 514 -1 332 300 71 41 chr1 209292308 209292575 -33371778 + L1ME LINE L1 5480 5754 -410 1043 233 48 19 chr1 209293058 209293549 -33370804 + L1MB7 LINE L1 1026 1550 -4992 252 306 0 0 chr1 209293870 209293942 -33370411 - L1M4c LINE L1 -5109 1275 1204 186 43 0 0 chr1 209293989 209294012 -33370341 + (GA)n Simple_repeat Simple_repeat 2 24 0 653 254 127 31 chr1 209294023 209294283 -33370070 + L1MB7 LINE L1 1577 1861 -4785 2402 211 59 10 chr1 209294287 209294878 -33369475 + L1MB7 LINE L1 5565 6184 0 * 2468 260 62 26 chr1 209294867 209295834 -33368519 + L1MB7 LINE L1 1991 2982 -3662 392 0 21 0 chr1 209295834 209295882 -33368471 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2468 260 62 26 chr1 209295882 209296400 -33367953 + L1MB7 LINE L1 2982 3480 -3164 2713 244 25 11 chr1 209296452 209297162 -33367191 + L1MB7 LINE L1 5954 6673 -9 445 277 147 16 chr1 209297818 209298002 -33366351 + MER63A DNA MER1_type 2 209 -1 307 336 8 16 chr1 209298526 209298648 -33365705 + MLT2E LTR ERVL 34 154 -474 502 277 73 62 chr1 209298702 209298976 -33365377 + MLT2E LTR ERVL 351 627 -1 192 40 0 0 chr1 209299611 209299636 -33364717 + (A)n Simple_repeat Simple_repeat 1 25 0 311 247 12 25 chr1 209299684 209299765 -33364588 + ERVL LTR ERVL 877 956 -4808 1921 293 58 31 chr1 209300039 209301099 -33363254 + ERVL LTR ERVL 1577 2723 -3041 313 234 186 8 chr1 209301114 209301238 -33363115 - MLT1F1 LTR MaLR 0 567 422 5185 184 22 7 chr1 209301368 209303171 -33361182 - L1MA7 LINE L1 -2 6289 4460 19343 124 48 11 chr1 209303211 209306159 -33358194 - L1P LINE L1 -3053 3093 39 631 251 59 27 chr1 209306441 209306660 -33357693 + ERVL LTR ERVL 4312 4537 -1227 1417 194 14 7 chr1 209306786 209307075 -33357278 - AluJo SINE Alu -21 291 1 293 367 27 14 chr1 209307262 209307409 -33356944 + MIR3 SINE MIR 47 195 -13 231 364 61 0 chr1 209307637 209307740 -33356613 - MIR SINE MIR -54 154 45 22 88 0 0 chr1 209307820 209307877 -33356476 + AT_rich Low_complexity Low_complexity 1 57 0 258 220 0 0 chr1 209308298 209308348 -33356005 - L2 LINE L2 -30 3242 3193 261 369 86 35 chr1 209309420 209309759 -33354594 + L2 LINE L2 464 819 -2495 5726 59 8 0 chr1 209309870 209310600 -33353753 - L1PA8A LINE L1 -142 5989 5254 495 374 59 31 chr1 209310687 209311249 -33353104 + L2 LINE L2 2468 3041 -231 263 284 0 0 chr1 209312637 209312704 -33351649 - MIR SINE MIR 0 262 196 243 295 0 0 chr1 209312704 209312765 -33351588 + (TA)n Simple_repeat Simple_repeat 1 61 0 205 203 0 29 chr1 209312846 209312915 -33351438 + (TA)n Simple_repeat Simple_repeat 2 68 0 1364 219 112 40 chr1 209312967 209313344 -33351009 - MLT1C LTR MaLR -8 459 42 1091 201 63 104 chr1 209313344 209313757 -33350596 - MSTD LTR MaLR 0 396 1 6359 247 66 19 chr1 209313762 209315412 -33348941 - MSTD-int LTR MaLR -6 1729 3 1558 218 55 16 chr1 209315415 209315796 -33348557 - MSTD LTR MaLR 0 396 1 231 89 44 67 chr1 209315798 209315843 -33348510 - MLT1C LTR MaLR -423 44 1 859 280 54 39 chr1 209318646 209319032 -33345321 + L1MEc LINE L1 44 435 -5961 11604 188 30 18 chr1 209319063 209321254 -33343099 + L1M1 LINE L1 17 2234 -5331 5235 150 27 8 chr1 209321365 209322209 -33342144 + L1M1 LINE L1 5821 6696 -1027 2169 130 36 30 chr1 209322209 209322571 -33341782 - THE1B LTR MaLR 0 364 1 5235 150 27 8 chr1 209322571 209322963 -33341390 + L1M1 LINE L1 6696 7079 -644 9587 177 38 12 chr1 209323072 209326058 -33338295 + L1M1 LINE L1 2739 5804 -1761 1241 133 13 10 chr1 209326159 209326335 -33338018 + L1MA1 LINE L1 5833 6007 -159 2042 116 70 3 chr1 209326335 209326684 -33337669 + L1MA2 LINE L1 5926 6304 0 1241 133 13 10 chr1 209326684 209326723 -33337630 + L1MA1 LINE L1 6007 6044 -122 1358 230 118 20 chr1 209326882 209327516 -33336837 + L1M4 LINE L1 3940 4635 -1511 264 305 61 84 chr1 209327801 209327932 -33336421 - MER102b DNA MER1_type 0 341 214 2037 139 126 23 chr1 209327932 209328320 -33336033 - MSTA LTR MaLR 0 428 1 8773 152 37 35 chr1 209328320 209329878 -33334475 - MSTA-int LTR MaLR 0 1580 21 912 180 134 5 chr1 209329911 209330105 -33334248 - MSTA LTR MaLR 0 428 210 941 154 138 11 chr1 209330214 209330402 -33333951 - MSTA LTR MaLR -216 212 1 993 332 33 26 chr1 209331628 209332047 -33332306 + L1M2c LINE L1 3 424 -6365 * 1486 164 84 4 chr1 209332040 209332543 -33331810 + L1M2 LINE L1 5015 5554 -743 1869 119 194 167 chr1 209333013 209333658 -33330695 - LTR12 LTR ERV1 0 714 53 1238 167 51 39 chr1 209333659 209333995 -33330358 - pTR5 LTR ERV1 -1356 1082 743 346 286 71 83 chr1 209334103 209334141 -33330212 - MIR3 SINE MIR -28 180 143 2068 118 0 26 chr1 209334141 209334447 -33329906 - AluSx SINE Alu -14 298 1 346 286 71 83 chr1 209334447 209334576 -33329777 - MIR3 SINE MIR -65 143 15 1425 370 19 10 chr1 209334720 209335028 -33329325 - AluY SINE Alu 0 311 1 887 194 0 0 chr1 209335064 209335219 -33329134 + FAM SINE Alu 17 171 -14 14821 143 50 16 chr1 209335290 209335738 -33328615 - Tigger2 DNA MER2_type 0 2718 2286 1908 103 37 4 chr1 209335738 209336174 -33328179 + AluSg SINE Alu 1 445 0 14821 143 50 16 chr1 209336174 209338354 -33325999 - Tigger2 DNA MER2_type -432 2286 1 245 284 45 0 chr1 209338655 209338722 -33325631 - MIR SINE MIR -7 255 186 297 377 19 19 chr1 209338955 209339109 -33325244 + MIR SINE MIR 37 190 -72 1314 230 21 45 chr1 209339916 209340251 -33324102 - MLT1J1 LTR MaLR -119 327 1 1945 137 3 41 chr1 209340611 209340977 -33323376 - L1PA16 LINE L1 -1 6165 5814 313 82 20 0 chr1 209341008 209341057 -33323296 + L1PA6 LINE L1 6006 6055 -99 * 2820 125 16 0 chr1 209341039 209341463 -33322890 - L1PA16 LINE L1 -325 5841 5411 495 328 102 8 chr1 209342338 209342594 -33321759 + MLT1I LTR MaLR 123 402 -7 1883 153 67 0 chr1 209342702 209343015 -33321338 - MLT1B LTR MaLR -56 334 1 2442 66 0 0 chr1 209343476 209343762 -33320591 + AluY SINE Alu 1 286 -25 21 0 0 0 chr1 209343762 209343783 -33320570 + AT_rich Low_complexity Low_complexity 1 21 0 7840 187 38 91 chr1 209344053 209344849 -33319504 - L1 LINE L1 -1643 5205 4368 1126 163 96 46 chr1 209344849 209345088 -33319265 - AluSx SINE Alu -24 288 38 7840 187 38 91 chr1 209345088 209347274 -33317079 - L1 LINE L1 -2480 4368 2157 551 326 36 15 chr1 209347312 209347785 -33316568 - L1MEd LINE L1 -2440 3689 3207 25 65 0 0 chr1 209347925 209347971 -33316382 + AT_rich Low_complexity Low_complexity 1 46 0 209 57 29 0 chr1 209347991 209348026 -33316327 + (GA)n Simple_repeat Simple_repeat 1 36 0 395 264 42 23 chr1 209348061 209348277 -33316076 - L1MEd LINE L1 -3702 2427 2208 315 235 43 52 chr1 209348290 209348405 -33315948 - L1MEd LINE L1 -4151 2159 2046 360 64 0 0 chr1 209348434 209348481 -33315872 + (TA)n Simple_repeat Simple_repeat 1 47 0 4703 98 21 0 chr1 209348481 209349158 -33315195 - L1PA13 LINE L1 -8 6155 5465 3111 136 14 1 chr1 209349241 209349863 -33314490 - L1PA13 LINE L1 -705 5463 4835 * 6574 206 48 27 chr1 209349854 209353008 -33311345 - L1PA13 LINE L1 -3432 3365 1 403 344 99 26 chr1 209353222 209353574 -33310779 - L1MEd LINE L1 -4578 1732 1355 501 290 105 20 chr1 209353588 209353825 -33310528 - L1MEd LINE L1 -4846 1283 1067 180 111 0 0 chr1 209353825 209353852 -33310501 + (TG)n Simple_repeat Simple_repeat 2 28 0 501 290 105 20 chr1 209353852 209354244 -33310109 - L1MEd LINE L1 -5062 1067 601 283 320 40 10 chr1 209355207 209355307 -33309046 + LTR33A LTR ERVL 59 161 -362 229 306 10 10 chr1 209355524 209355622 -33308731 + LTR33A LTR ERVL 411 508 -15 1668 141 10 28 chr1 209356173 209356464 -33307889 + AluSx SINE Alu 21 306 -6 33 43 0 0 chr1 209356892 209356939 -33307414 + AT_rich Low_complexity Low_complexity 1 47 0 2990 90 2 0 chr1 209358307 209358718 -33305635 - L1P LINE L1 -4158 1988 1577 545 323 30 0 chr1 209362018 209362185 -33302168 + MIR SINE MIR 35 206 -56 1754 147 7 3 chr1 209362597 209362882 -33301471 + L1PA16 LINE L1 5861 6146 -20 10683 117 74 19 chr1 209363029 209364762 -33299591 - Tigger4(Zombi) DNA MER2_type 0 2731 903 869 186 81 0 chr1 209364756 209364917 -33299436 - Tigger4(Zombi) DNA MER2_type -2557 174 1 * 363 192 80 56 chr1 209365092 209365217 -33299136 - MLT1J2 LTR MaLR -302 148 21 300 314 59 24 chr1 209365224 209365393 -33298960 + L2 LINE L2 3133 3307 -6 251 258 0 0 chr1 209365395 209365461 -33298892 + (ACTG)n Simple_repeat Simple_repeat 4 69 0 335 119 149 0 chr1 209365472 209365539 -33298814 + MADE1 DNA Mariner 3 79 -1 1431 246 64 11 chr1 209365590 209366136 -33298217 + LTR40a LTR ERVL 4 519 0 252 200 29 29 chr1 209367489 209367542 -33296811 + (CATATA)n Simple_repeat Simple_repeat 2 57 -14 249 33 0 0 chr1 209367542 209367572 -33296781 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 200 29 29 chr1 209367572 209367588 -33296765 + (CATATA)n Simple_repeat Simple_repeat 56 71 0 263 245 128 21 chr1 209369706 209369800 -33294553 + MIR SINE MIR 51 154 -108 515 312 0 7 chr1 209369803 209369957 -33294396 - MIR SINE MIR -4 258 106 215 292 28 14 chr1 209369961 209370033 -33294320 + MIR SINE MIR 162 234 -28 296 309 0 0 chr1 209370374 209370458 -33293895 - AluSp/q SINE Alu -16 287 204 21 57 0 0 chr1 209370893 209370928 -33293425 + AT_rich Low_complexity Low_complexity 1 35 0 459 290 111 37 chr1 209370989 209371983 -33292370 + L1ME LINE L1 4578 5643 -519 21 57 0 0 chr1 209372443 209372478 -33291875 + AT_rich Low_complexity Low_complexity 1 35 0 1952 187 132 20 chr1 209372554 209373008 -33291345 + MLT1D LTR MaLR 1 505 0 30 27 0 0 chr1 209373590 209373627 -33290726 + AT_rich Low_complexity Low_complexity 1 37 0 369 343 39 34 chr1 209374361 209374594 -33289759 + MIR SINE MIR 9 242 -20 251 352 0 44 chr1 209375079 209375170 -33289183 - L2 LINE L2 0 3272 3186 4612 168 35 5 chr1 209375283 209376123 -33288230 + MER6 DNA MER2_type 1 865 0 234 163 0 0 chr1 209376859 209376902 -33287451 + L1MB2 LINE L1 5167 5209 -937 1968 123 181 8 chr1 209376904 209377269 -33287084 - MSTA LTR MaLR 0 428 1 9428 162 25 2 chr1 209377269 209378882 -33285471 - MSTA-int LTR MaLR 0 1651 1 2146 169 41 10 chr1 209378882 209379297 -33285056 - MSTA LTR MaLR 0 428 1 3981 178 28 64 chr1 209379297 209380288 -33284065 + L1MB2 LINE L1 5207 6161 -10 3333 106 45 4 chr1 209381732 209382223 -33282130 + MER9 LTR ERVK 1 511 0 21 0 0 0 chr1 209382365 209382386 -33281967 + AT_rich Low_complexity Low_complexity 1 21 0 232 261 0 43 chr1 209382539 209382608 -33281745 - MIR SINE MIR -34 228 163 374 235 122 70 chr1 209382864 209382979 -33281374 + L2 LINE L2 3193 3313 0 267 242 45 30 chr1 209383112 209383178 -33281175 + L3 LINE CR1 1498 1564 -13 1621 216 62 77 chr1 209383420 209383980 -33280373 - MLT2B3 LTR ERVL -2 552 1 260 367 128 20 chr1 209386200 209386396 -33277957 + L3b LINE CR1 1349 1565 -18 326 264 0 104 chr1 209386977 209387102 -33277251 + MER94 DNA DNA 6 117 -17 946 314 95 30 chr1 209387395 209387934 -33276419 - MLT1G1 LTR MaLR -18 577 4 412 345 0 20 chr1 209389566 209389714 -33274639 + MIR SINE MIR 7 151 -111 741 193 0 22 chr1 209389918 209390053 -33274300 - FLAM_A SINE Alu 0 133 2 199 368 23 68 chr1 209390774 209390934 -33273419 + L2 LINE L2 311 460 -2854 189 0 0 0 chr1 209390934 209390955 -33273398 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 199 368 23 68 chr1 209390955 209391014 -33273339 + L2 LINE L2 460 520 -2794 236 383 102 14 chr1 209391074 209391369 -33272984 + L2 LINE L2 438 758 -2556 313 328 94 23 chr1 209391418 209391589 -33272764 - MIR SINE MIR -77 185 3 2206 126 51 28 chr1 209391865 209392221 -33272132 + THE1B LTR MaLR 1 364 0 4545 100 3 0 chr1 209392227 209392857 -33271496 + THE1B-int LTR MaLR 63 694 -886 301 274 140 18 chr1 209394046 209394210 -33270143 - MER5A DNA MER1_type -4 185 2 368 344 54 9 chr1 209394271 209394492 -33269861 + L1MEc LINE L1 37 267 -6129 251 263 21 32 chr1 209394888 209394983 -33269370 + CT-rich Low_complexity Low_complexity 4 97 0 24 0 0 0 chr1 209395431 209395455 -33268898 + AT_rich Low_complexity Low_complexity 1 24 0 1730 221 56 60 chr1 209395492 209396043 -33268310 + L1ME1 LINE L1 5613 6161 -5 335 238 0 24 chr1 209398399 209398483 -33265870 + MLT1J1 LTR MaLR 66 147 -299 1621 189 0 17 chr1 209399286 209399588 -33264765 + AluJb SINE Alu 1 297 -15 21 57 0 0 chr1 209399721 209399756 -33264597 + AT_rich Low_complexity Low_complexity 1 35 0 373 285 101 48 chr1 209399817 209400812 -33263541 + L1ME4a LINE L1 4578 5643 -519 21 57 0 0 chr1 209401272 209401307 -33263046 + AT_rich Low_complexity Low_complexity 1 35 0 731 196 8 0 chr1 209401383 209401516 -33262837 + MLT1D LTR MaLR 1 134 -371 10347 178 46 14 chr1 209401522 209401764 -33262589 - L1 LINE L1 -1500 5348 5115 231 114 0 0 chr1 209401764 209401808 -33262545 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 10347 178 46 14 chr1 209401808 209401943 -33262410 - L1 LINE L1 -1733 5115 4986 1951 113 10 17 chr1 209401943 209402234 -33262119 - AluSq SINE Alu -24 289 1 10347 178 46 14 chr1 209402234 209405451 -33258902 - L1 LINE L1 -1862 4986 1647 6418 84 23 13 chr1 209405594 209406463 -33257890 + THE1B-int LTR MaLR 703 1580 0 2225 112 51 28 chr1 209406463 209406819 -33257534 + THE1B LTR MaLR 1 364 0 455 32 0 16 chr1 209407715 209407777 -33256576 + (TG)n Simple_repeat Simple_repeat 1 61 0 242 300 10 10 chr1 209408054 209408154 -33256199 + L1ME4a LINE L1 5686 5785 -336 344 271 43 96 chr1 209408274 209408554 -33255799 + L1ME4a LINE L1 5845 6109 -12 332 217 48 0 chr1 209410141 209410224 -33254129 + MER53 DNA DNA 13 99 -90 439 295 60 92 chr1 209410291 209410402 -33253951 + LTR67 LTR ERVL 96 209 -348 2413 85 0 0 chr1 209410402 209410707 -33253646 - AluSx SINE Alu -7 305 1 439 295 60 92 chr1 209410707 209411032 -33253321 + LTR67 LTR ERVL 209 518 -39 2108 131 28 11 chr1 209411035 209411394 -33252959 - L1MA4A LINE L1 -6 6297 5933 679 289 52 44 chr1 209411440 209411689 -33252664 + MIR SINE MIR 2 252 -10 249 244 58 35 chr1 209414433 209414519 -33249834 - MER103 DNA DNA -10 156 69 1898 161 10 0 chr1 209414635 209414939 -33249414 + AluSq SINE Alu 1 307 -6 919 254 67 62 chr1 209414969 209415358 -33248995 + MLT1C LTR MaLR 6 396 -71 505 254 0 8 chr1 209415390 209415520 -33248833 - AluJb SINE Alu -29 283 155 1978 291 113 21 chr1 209415667 209416688 -33247665 - L2 LINE L2 -934 2380 1266 346 281 31 62 chr1 209416768 209416960 -33247393 + LTR37A LTR ERV1 55 240 -186 284 135 0 0 chr1 209416960 209417012 -33247341 - L1MB8 LINE L1 0 6178 6127 867 199 25 0 chr1 209417015 209417211 -33247142 + LTR37A LTR ERV1 218 418 -8 402 172 83 118 chr1 209417537 209417706 -33246647 - MER106A DNA MER1_type -73 163 1 2365 224 20 27 chr1 209417748 209418310 -33246043 + MER74A LTR ERVL 1 558 0 1940 115 0 0 chr1 209419117 209419370 -33244983 - AluSx SINE Alu -59 253 1 4746 157 56 3 chr1 209419481 209420360 -33243993 - L1MA4 LINE L1 -43 6257 5333 1191 239 50 0 chr1 209421508 209421788 -33242565 - AluSg SINE Alu -6 294 1 417 358 93 9 chr1 209422119 209422334 -33242019 - MIR SINE MIR -10 252 20 912 278 52 41 chr1 209422519 209422886 -33241467 - L2 LINE L2 0 3313 2943 1208 222 101 38 chr1 209422886 209423251 -33241102 - MLT1C LTR MaLR -1 466 79 189 273 159 0 chr1 209423268 209423356 -33240997 - L2 LINE L2 -369 2944 2843 1121 295 37 41 chr1 209423818 209424334 -33240019 - L2 LINE L2 -511 2803 2290 526 325 58 76 chr1 209424488 209425031 -33239322 + L1MEd LINE L1 170 721 -5410 2113 110 21 0 chr1 209425031 209425322 -33239031 + AluSg SINE Alu 3 299 -11 526 325 58 76 chr1 209425322 209425344 -33239009 + L1MEd LINE L1 721 742 -5389 288 0 0 0 chr1 209425344 209425376 -33238977 + (TG)n Simple_repeat Simple_repeat 2 33 0 526 325 58 76 chr1 209425376 209425651 -33238702 + L1MEd LINE L1 742 846 -5285 920 319 27 18 chr1 209425871 209426203 -33238150 - L2 LINE L2 -2467 847 513 1353 205 77 12 chr1 209426384 209426721 -33237632 + Charlie4a DNA MER1_type 150 508 0 265 313 113 48 chr1 209426802 209427032 -33237321 - L2 LINE L2 -135 3178 2934 706 222 17 34 chr1 209427213 209427389 -33236964 + MER58 DNA MER1_type 16 188 -153 207 125 0 111 chr1 209427555 209427627 -33236726 + (TTTTTA)n Simple_repeat Simple_repeat 3 66 0 1905 209 135 0 chr1 209427633 209428026 -33236327 + MLT2B1 LTR ERVL 1 446 -74 247 352 0 33 chr1 209428182 209428273 -33236080 - L2 LINE L2 -4 3268 3181 181 255 20 0 chr1 209428416 209428467 -33235886 - L2 LINE L2 -304 2968 2917 198 71 0 0 chr1 209428474 209428502 -33235851 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 196 355 93 0 chr1 209428509 209428616 -33235737 - L2 LINE L2 -34 3238 3122 876 261 62 51 chr1 209429219 209429812 -33234541 + L1MEd LINE L1 658 1257 -4862 329 265 102 0 chr1 209429911 209430009 -33234344 + MER91C DNA MER1_type 2 109 -31 249 286 29 76 chr1 209430077 209430248 -33234105 + L1MEd LINE L1 1426 1588 -4722 2788 224 91 35 chr1 209430685 209431458 -33232895 - MER21B LTR ERV1 -5 858 43 3430 68 13 2 chr1 209431469 209431936 -33232417 + L1PA7 LINE L1 5681 6152 -2 5821 186 18 13 chr1 209432240 209433494 -33230859 + L1 LINE L1 1403 2663 -4186 5282 211 22 20 chr1 209433624 209435262 -33229091 + L1 LINE L1 2575 4217 -2631 4189 206 32 14 chr1 209435247 209436422 -33227931 + L1 LINE L1 4761 5988 -860 * 362 292 115 47 chr1 209436579 209436771 -33227582 - MIR SINE MIR -46 216 12 1101 167 0 80 chr1 209437296 209437572 -33226781 - L1MA4 LINE L1 -9 6291 6038 29 28 0 0 chr1 209437799 209437835 -33226518 + AT_rich Low_complexity Low_complexity 1 36 0 1017 184 48 5 chr1 209438153 209438359 -33225994 + MER20 DNA MER1_type 2 216 -3 796 274 47 5 chr1 209438560 209438772 -33225581 + MIR SINE MIR 21 241 -21 1112 269 78 17 chr1 209439033 209439684 -33224669 + HsTC2a DNA Tc2 2 744 0 347 355 72 40 chr1 209439907 209439944 -33224409 + L2 LINE L2 2955 2989 -283 4807 143 22 55 chr1 209439944 209440249 -33224104 + MER49 LTR ERV1 5 318 -605 1873 118 87 7 chr1 209440249 209440538 -33223815 + AluSx SINE Alu 1 312 0 4807 143 22 55 chr1 209440538 209441182 -33223171 + MER49 LTR ERV1 318 923 0 347 355 72 40 chr1 209441182 209441448 -33222905 + L2 LINE L2 2989 3268 -4 940 298 157 19 chr1 209441518 209442013 -33222340 - L2 LINE L2 0 3313 2742 2273 93 0 3 chr1 209442461 209442762 -33221591 - AluSq SINE Alu -13 300 1 208 339 76 0 chr1 209442832 209442950 -33221403 + MIR SINE MIR 120 246 -16 21 36 0 0 chr1 209442952 209442980 -33221373 + AT_rich Low_complexity Low_complexity 1 28 0 181 342 68 26 chr1 209444382 209444499 -33219854 - MIR SINE MIR -61 147 26 296 337 32 64 chr1 209444513 209444700 -33219653 + MIR SINE MIR 20 150 -58 3268 125 92 9 chr1 209445062 209445629 -33218724 - L1PA16 LINE L1 -11 6155 5542 2273 80 3 20 chr1 209445862 209446161 -33218192 + AluY SINE Alu 3 296 -15 201 268 219 24 chr1 209446574 209446697 -33217656 - L2 LINE L2 -5 3267 3121 219 315 15 62 chr1 209447452 209447582 -33216771 - MIR SINE MIR -54 208 85 324 253 0 23 chr1 209447762 209447849 -33216504 - MLT1I LTR MaLR 0 409 325 25 65 0 0 chr1 209447977 209448023 -33216330 + AT_rich Low_complexity Low_complexity 1 46 0 1640 176 3 19 chr1 209448077 209448384 -33215969 - AluJo SINE Alu -10 302 1 273 282 74 37 chr1 209448765 209448928 -33215425 - L1ME LINE L1 -294 5876 5708 269 372 0 0 chr1 209449234 209449363 -33214990 - MIR SINE MIR -1 261 133 254 259 64 49 chr1 209449911 209450038 -33214315 - MIR SINE MIR -72 136 2 205 316 79 53 chr1 209450062 209450176 -33214177 + L2 LINE L2 3179 3295 -18 4324 143 36 14 chr1 209450668 209451437 -33212916 + L1MB3 LINE L1 5397 6182 -1 320 158 0 18 chr1 209452415 209452472 -33211881 - L2 LINE L2 -2 3270 3215 622 183 64 53 chr1 209452472 209452672 -33211681 - MER51A LTR ERV1 0 640 440 39606 74 4 9 chr1 209452672 209458843 -33205510 + L1PA5 LINE L1 11 6154 0 334 261 51 8 chr1 209458870 209459030 -33205323 + L1M4c LINE L1 1185 1459 -4923 3888 68 2 18 chr1 209459136 209459682 -33204671 + L1PA5 LINE L1 5618 6154 0 593 250 86 42 chr1 209459697 209460026 -33204327 + L1MCa LINE L1 1166 1657 -4769 6789 155 15 18 chr1 209460227 209461421 -33202932 - LTR57-int LTR ERVL -4152 1191 1 2461 164 25 2 chr1 209461421 209461818 -33202535 - LTR57 LTR ERVL 0 411 6 200 208 0 57 chr1 209462179 209462232 -33202121 + (TATG)n Simple_repeat Simple_repeat 1 50 0 24 32 0 0 chr1 209463975 209464006 -33200347 + AT_rich Low_complexity Low_complexity 1 31 0 1215 258 67 39 chr1 209464008 209464439 -33199914 + L1MCc LINE L1 13 455 -5968 694 274 86 84 chr1 209464504 209464887 -33199466 + L1MCc LINE L1 649 1032 -5391 457 216 50 50 chr1 209465064 209465203 -33199150 - LTR41 LTR ERVL -632 141 3 638 225 14 76 chr1 209465203 209465500 -33198853 - L1MDa LINE L1 -3843 2697 2421 814 205 71 89 chr1 209468415 209468639 -33195714 - MER58A DNA MER1_type -4 220 1 258 32 0 0 chr1 209468784 209468815 -33195538 + (TG)n Simple_repeat Simple_repeat 1 31 0 721 307 105 40 chr1 209468830 209469257 -33195096 - LTR33 LTR ERVL -47 474 20 1628 240 36 34 chr1 209469340 209469840 -33194513 - L1ME1 LINE L1 -4 6231 5731 1628 196 52 55 chr1 209469853 209470311 -33194042 + MLT1C LTR MaLR 11 467 0 2254 237 64 23 chr1 209470311 209471481 -33192872 - L1ME1 LINE L1 -499 5736 4511 * 14173 171 32 43 chr1 209471477 209473087 -33191266 - L1MA4A LINE L1 -4 7001 5375 1944 152 10 0 chr1 209473087 209473377 -33190976 - AluSg SINE Alu -17 293 1 14173 171 32 43 chr1 209473377 209473684 -33190669 - L1MA4A LINE L1 -1630 5375 5066 231 114 0 0 chr1 209473684 209473728 -33190625 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 14173 171 32 43 chr1 209473728 209473863 -33190490 - L1MA4A LINE L1 -1939 5066 4931 1951 113 10 17 chr1 209473863 209474154 -33190199 - AluSq SINE Alu -24 289 1 14173 171 32 43 chr1 209474154 209477408 -33186945 - L1MA4A LINE L1 -2074 4931 1643 234 0 0 0 chr1 209477408 209477434 -33186919 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 14173 171 32 43 chr1 209477434 209477447 -33186906 - L1MA4A LINE L1 -5362 1643 1631 1320 98 21 5 chr1 209477447 209477640 -33186713 - AluY SINE Alu -115 196 1 14173 171 32 43 chr1 209477640 209479219 -33185134 - L1MA4A LINE L1 -5374 1631 3 5548 231 51 42 chr1 209479288 209479634 -33184719 - L1ME1 LINE L1 -1877 4338 3997 1689 184 20 3 chr1 209479634 209479928 -33184425 - AluJb SINE Alu -13 299 1 5548 231 51 42 chr1 209479928 209481567 -33182786 - L1ME1 LINE L1 -2218 3997 2375 2203 125 0 10 chr1 209481567 209481879 -33182474 - AluSx SINE Alu -3 309 1 5548 231 51 42 chr1 209481879 209481898 -33182455 - L1ME1 LINE L1 -3840 2375 2358 2292 178 54 2 chr1 209481898 209482303 -33182050 + MSTB LTR MaLR 1 426 0 5548 231 51 42 chr1 209482303 209482511 -33181842 - L1ME1 LINE L1 -3857 2358 2120 694 302 17 17 chr1 209482541 209482773 -33181580 - L2 LINE L2 -264 3049 2818 752 308 185 12 chr1 209482914 209483330 -33181023 + L2 LINE L2 67 554 -2760 2183 113 0 0 chr1 209483527 209483836 -33180517 + AluSx SINE Alu 1 309 0 237 196 0 0 chr1 209483889 209483935 -33180418 + MIR SINE MIR 92 137 -125 * 1160 265 225 40 chr1 209483930 209484587 -33179766 + L2 LINE L2 1547 2325 -989 306 292 62 0 chr1 209484706 209484802 -33179551 + MER5C DNA MER1_type 5 106 -218 2091 123 7 0 chr1 209484802 209485095 -33179258 - AluSx SINE Alu -14 298 4 226 115 39 0 chr1 209485146 209485198 -33179155 + (TA)n Simple_repeat Simple_repeat 2 55 0 357 83 0 0 chr1 209485204 209485252 -33179101 + MLT2A1 LTR ERVL 393 440 -4 185 157 255 0 chr1 209485260 209485311 -33179042 + MER5C DNA MER1_type 261 324 0 21 36 0 0 chr1 209485353 209485381 -33178972 + AT_rich Low_complexity Low_complexity 1 28 0 468 283 103 48 chr1 209485834 209486146 -33178207 - L1ME LINE L1 -353 5768 5436 2214 103 0 0 chr1 209486146 209486470 -33177883 - AluSg SINE Alu 0 310 1 468 283 103 48 chr1 209486470 209486537 -33177816 - L1ME LINE L1 -685 5436 5374 26 0 0 0 chr1 209486899 209486925 -33177428 + AT_rich Low_complexity Low_complexity 1 26 0 1049 84 281 6 chr1 209487130 209487210 -33177143 - MER30 DNA MER1_type 0 230 173 240 35 0 0 chr1 209487210 209487239 -33177114 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 1049 84 281 6 chr1 209487239 209487336 -33177017 - MER30 DNA MER1_type -57 173 4 309 370 8 15 chr1 209487421 209487572 -33176781 + MIR SINE MIR 8 156 -64 187 188 0 0 chr1 209488071 209488103 -33176250 - MIR SINE MIR -8 254 223 316 300 117 84 chr1 209488630 209489057 -33175296 - L1M2 LINE L1 -5656 1193 753 23 0 0 0 chr1 209489796 209489819 -33174534 + GC_rich Low_complexity Low_complexity 1 23 0 2318 78 3 7 chr1 209490424 209490732 -33173621 - AluSc SINE Alu -2 307 1 1029 57 0 0 chr1 209490907 209491031 -33173322 - AluY SINE Alu -10 301 178 328 337 95 12 chr1 209491818 209491987 -33172366 + MIR SINE MIR 28 210 -52 2395 66 0 3 chr1 209492943 209493244 -33171109 - AluY SINE Alu -11 300 1 245 234 0 0 chr1 209493551 209493598 -33170755 - L2 LINE L2 -9 3263 3217 22 0 0 0 chr1 209495222 209495244 -33169109 + AT_rich Low_complexity Low_complexity 1 22 0 1998 155 0 0 chr1 209496282 209496585 -33167768 + AluSx SINE Alu 1 303 -9 1858 151 3 28 chr1 209497363 209497681 -33166672 - AluSx SINE Alu -2 310 1 653 164 0 43 chr1 209497736 209497852 -33166501 + FRAM SINE Alu 1 110 -66 1905 87 94 4 chr1 209497912 209498178 -33166175 - AluYa5 SINE Alu -19 292 3 376 297 45 71 chr1 209498463 209498618 -33165735 - L2 LINE L2 -1 3271 3121 544 217 191 21 chr1 209499565 209499754 -33164599 - MER58A DNA MER1_type 0 224 4 27 49 0 0 chr1 209500145 209500186 -33164167 + AT_rich Low_complexity Low_complexity 1 41 0 909 225 9 52 chr1 209500654 209500812 -33163541 - MER58A DNA MER1_type -2199 221 75 2448 70 0 0 chr1 209500812 209501110 -33163243 - AluY SINE Alu -13 298 1 909 225 9 52 chr1 209501110 209501182 -33163171 - MER58A DNA MER1_type -2345 75 1 1900 137 49 0 chr1 209502292 209502576 -33161777 + AluSg SINE Alu 1 298 -12 412 323 94 36 chr1 209503397 209503704 -33160649 - L1M4 LINE L1 -1122 5024 4700 24 32 0 0 chr1 209503831 209503862 -33160491 + AT_rich Low_complexity Low_complexity 1 31 0 2175 125 0 13 chr1 209503862 209504174 -33160179 - AluSx SINE Alu -4 308 1 3385 126 32 2 chr1 209504443 209504974 -33159379 - MER41B LTR ERV1 -88 547 1 8037 118 27 33 chr1 209504974 209506290 -33158063 - MER41B-int LTR ERV1 0 5946 4639 501 153 35 0 chr1 209506285 209506370 -33157983 - MER41B-int LTR ERV1 -5858 88 1 * 872 113 0 8 chr1 209506370 209506503 -33157850 - MER41B LTR ERV1 0 635 504 209 119 0 24 chr1 209507694 209507736 -33156617 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 653 237 46 52 chr1 209508180 209508353 -33156000 + L2 LINE L2 327 498 -2816 6016 186 119 77 chr1 209508357 209508431 -33155922 - Charlie1 DNA MER1_type -6 2755 2686 2302 100 3 3 chr1 209508431 209508741 -33155612 - AluY SINE Alu -1 310 1 6016 186 119 77 chr1 209508741 209510436 -33153917 - Charlie1 DNA MER1_type -75 2686 898 1653 177 16 32 chr1 209510436 209510752 -33153601 - AluJo SINE Alu -1 311 1 6016 186 119 77 chr1 209510752 209510882 -33153471 - Charlie1 DNA MER1_type -1863 898 775 391 153 0 0 chr1 209510880 209510939 -33153414 - MER68 LTR ERV1 -346 216 158 * 3127 198 33 10 chr1 209510946 209511639 -33152714 - L1ME2 LINE L1 -197 5967 5259 421 247 12 0 chr1 209511641 209511726 -33152627 + MER20 DNA MER1_type 3 88 -131 464 273 138 18 chr1 209511798 209512308 -33152045 - L1MEc LINE L1 -5011 1194 660 617 96 11 0 chr1 209512564 209512658 -33151695 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 2179 109 7 0 chr1 209512662 209512965 -33151388 - AluSc SINE Alu -4 305 1 581 272 54 72 chr1 209513119 209513161 -33151192 - L1MEc LINE L1 -6090 306 265 2071 143 28 28 chr1 209513161 209513525 -33150828 - THE1B LTR MaLR 0 364 1 581 272 54 72 chr1 209513525 209513758 -33150595 - L1MEc LINE L1 -6131 265 36 2173 123 3 0 chr1 209515169 209515471 -33148882 - AluSx SINE Alu -9 303 1 220 311 179 13 chr1 209515472 209515623 -33148730 - MIR3 SINE MIR -10 198 23 184 369 0 58 chr1 209515762 209515865 -33148488 + L2 LINE L2 2945 3041 -231 189 253 130 110 chr1 209516267 209516421 -33147932 - MER5B DNA MER1_type -18 160 4 635 355 97 39 chr1 209517206 209517854 -33146499 - L2 LINE L2 -553 2761 2076 307 337 93 55 chr1 209517861 209518300 -33146053 - L2 LINE L2 -1374 1940 1485 335 247 141 59 chr1 209519979 209520149 -33144204 + L1MEd LINE L1 904 1087 -5032 305 248 58 41 chr1 209520366 209520487 -33143866 + HAL1 LINE L1 1498 1620 -887 1740 131 4 0 chr1 209522251 209522503 -33141850 - AluSx SINE Alu -14 298 46 311 266 11 43 chr1 209522716 209522810 -33141543 + MIR SINE MIR 22 112 -150 611 238 16 0 chr1 209524320 209524442 -33139911 + MER58B DNA MER1_type 218 341 0 181 358 74 0 chr1 209525028 209525123 -33139230 - L2 LINE L2 0 3272 3171 754 194 0 7 chr1 209525774 209525918 -33138435 + FLAM_C SINE Alu 1 143 0 21 71 0 0 chr1 209526038 209526080 -33138273 + AT_rich Low_complexity Low_complexity 1 42 0 32 67 0 0 chr1 209526221 209526281 -33138072 + AT_rich Low_complexity Low_complexity 1 60 0 1460 318 174 24 chr1 209526659 209527800 -33136553 + L2 LINE L2 1991 3297 -16 22 0 0 0 chr1 209528209 209528231 -33136122 + AT_rich Low_complexity Low_complexity 1 22 0 182 261 65 0 chr1 209530243 209530289 -33134064 - L2 LINE L2 -2 3311 3263 183 300 71 0 chr1 209530413 209530483 -33133870 - MIR SINE MIR -33 229 155 351 329 180 50 chr1 209530536 209531334 -33133019 - L2 LINE L2 -243 3029 2130 273 57 0 0 chr1 209531596 209531631 -33132722 - U2 snRNA snRNA -153 35 1 684 279 57 22 chr1 209531967 209532215 -33132138 + MIR SINE MIR 8 260 -2 23 33 0 0 chr1 209532906 209532936 -33131417 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr1 209533086 209533113 -33131240 + AT_rich Low_complexity Low_complexity 1 27 0 273 330 104 32 chr1 209533912 209534133 -33130220 + MIR SINE MIR 20 256 -6 21 0 0 0 chr1 209534168 209534189 -33130164 + AT_rich Low_complexity Low_complexity 1 21 0 1358 94 42 24 chr1 209534236 209534448 -33129905 + L1PA11 LINE L1 5938 6153 -21 485 118 0 0 chr1 209534552 209534620 -33129733 - AluSc SINE Alu -29 280 213 4816 191 20 19 chr1 209534626 209535330 -33129023 - L1P LINE L1 -800 5346 4639 2327 103 3 6 chr1 209535330 209535642 -33128711 - AluY SINE Alu 0 311 1 4816 191 20 19 chr1 209535642 209536074 -33128279 - L1P LINE L1 -1507 4639 4209 21 36 0 0 chr1 209536388 209536416 -33127937 + AT_rich Low_complexity Low_complexity 1 28 0 2490 66 0 0 chr1 209536650 209536952 -33127401 + AluY SINE Alu 1 302 -9 2048 189 197 6 chr1 209536999 209537497 -33126856 - MER39 LTR ERV1 -37 670 78 2414 68 3 0 chr1 209537790 209538083 -33126270 + AluSp SINE Alu 1 294 -19 3123 201 69 12 chr1 209538098 209538829 -33125524 + MER21B LTR ERV1 1 801 -62 352 264 56 51 chr1 209538843 209539021 -33125332 + MER34 LTR ERV1 3 181 -361 372 90 72 9 chr1 209539088 209539199 -33125154 + (TA)n Simple_repeat Simple_repeat 1 118 0 643 293 38 49 chr1 209539199 209539486 -33124867 + MER34 LTR ERV1 257 540 -2 397 354 14 7 chr1 209543753 209543897 -33120456 - MIR SINE MIR -98 164 20 206 306 46 74 chr1 209543922 209544030 -33120323 + MER5A DNA MER1_type 35 139 -50 22 0 0 0 chr1 209544162 209544184 -33120169 + AT_rich Low_complexity Low_complexity 1 22 0 393 163 133 20 chr1 209544700 209544798 -33119555 + MER5B DNA MER1_type 1 109 -69 213 254 0 16 chr1 209546074 209546137 -33118216 + (TA)n Simple_repeat Simple_repeat 2 63 0 376 151 0 42 chr1 209547526 209547645 -33116708 + (TA)n Simple_repeat Simple_repeat 1 114 0 554 69 0 0 chr1 209547645 209547717 -33116636 - AluSq/x SINE Alu -184 128 57 195 129 0 0 chr1 209547717 209547748 -33116605 + (TA)n Simple_repeat Simple_repeat 2 32 0 511 314 34 39 chr1 209547974 209548181 -33116172 + MIR SINE MIR 1 206 -56 2182 103 13 16 chr1 209548652 209548670 -33115683 - AluSg SINE Alu 0 310 293 1344 63 0 0 chr1 209548670 209548845 -33115508 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2182 103 13 16 chr1 209548845 209549137 -33115216 - AluSg SINE Alu -17 293 1 2196 95 14 0 chr1 209549598 209549892 -33114461 - AluSx SINE Alu -14 298 1 2340 40 0 0 chr1 209551073 209551345 -33113008 - AluY SINE Alu 0 311 40 354 300 0 0 chr1 209551731 209551821 -33112532 + L1MC4 LINE L1 6614 6703 -1339 2351 88 10 7 chr1 209551864 209552171 -33112182 + AluSx SINE Alu 1 308 -4 204 67 0 0 chr1 209552521 209552551 -33111802 + (TG)n Simple_repeat Simple_repeat 2 31 0 279 0 0 0 chr1 209553345 209553376 -33110977 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 988 146 0 0 chr1 209553376 209553520 -33110833 - AluY SINE Alu -32 279 136 219 234 0 0 chr1 209553592 209553639 -33110714 - MER5A DNA MER1_type -136 53 7 665 260 260 12 chr1 209554200 209554607 -33109746 - L2 LINE L2 0 3313 2806 347 240 80 20 chr1 209554907 209555007 -33109346 - MER91A DNA MER1_type -1 195 90 261 268 14 28 chr1 209555009 209555080 -33109273 - MER91A DNA MER1_type -22 174 105 725 266 6 12 chr1 209555421 209555594 -33108759 + MER5B DNA MER1_type 1 172 -6 2151 113 0 0 chr1 209556825 209557155 -33107198 - AluSg SINE Alu 0 330 1 315 297 115 18 chr1 209558553 209558718 -33105635 + MER5A DNA MER1_type 9 189 0 32 0 0 0 chr1 209559067 209559099 -33105254 + AT_rich Low_complexity Low_complexity 1 32 0 2139 130 3 0 chr1 209559639 209559939 -33104414 + AluSx SINE Alu 1 301 -11 2323 88 0 25 chr1 209559998 209560316 -33104037 + AluSg SINE Alu 1 310 0 332 315 98 7 chr1 209560914 209561057 -33103296 - MIR3 SINE MIR -23 185 30 180 77 0 0 chr1 209562142 209562168 -33102185 + (A)n Simple_repeat Simple_repeat 1 26 0 479 281 85 12 chr1 209563514 209563678 -33100675 - MIR SINE MIR -41 221 46 1860 196 77 0 chr1 209563769 209564173 -33100180 - MER63B DNA MER1_type 0 436 2 1996 118 3 10 chr1 209564310 209564598 -33099755 - AluSx SINE Alu -26 286 1 1735 172 10 23 chr1 209564827 209565130 -33099223 - AluJo SINE Alu -13 299 1 432 316 122 58 chr1 209565514 209566642 -33097711 - L2 LINE L2 -903 2411 1211 223 146 91 0 chr1 209566645 209566700 -33097653 + MIR SINE MIR 67 126 -136 247 291 101 0 chr1 209566710 209566789 -33097564 - MER91C DNA MER1_type -32 108 22 319 196 271 0 chr1 209566793 209566900 -33097453 + MIR SINE MIR 116 251 -11 470 268 162 35 chr1 209567042 209567475 -33096878 + L1ME4a LINE L1 5545 6032 -89 756 263 11 6 chr1 209567477 209567652 -33096701 + MER45A DNA AcHobo 3 178 0 1025 143 183 106 chr1 209567734 209567829 -33096524 + MER7A DNA MER2_type 2 88 -2950 2325 101 0 0 chr1 209567829 209568127 -33096226 - AluSx SINE Alu -14 298 1 1025 143 183 106 chr1 209568127 209568353 -33096000 + MER7A DNA MER2_type 88 346 0 330 357 45 31 chr1 209568505 209568796 -33095557 + L2 LINE L2 1769 2063 -1251 285 70 0 47 chr1 209569724 209569767 -33094586 + Tigger3(Golem) DNA MER2_type 2856 2896 -133 22 56 0 0 chr1 209570801 209570837 -33093516 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr1 209571589 209571614 -33092739 + (TTAAA)n Simple_repeat Simple_repeat 4 28 0 207 100 0 0 chr1 209572154 209572184 -33092169 + (A)n Simple_repeat Simple_repeat 1 30 0 451 299 0 60 chr1 209573403 209573570 -33090783 - MIR SINE MIR -50 212 56 219 125 0 0 chr1 209574951 209574991 -33089362 + (TCTCTG)n Simple_repeat Simple_repeat 1 40 0 1446 92 10 0 chr1 209575474 209575681 -33088672 - L1PA6 LINE L1 -3 6151 5943 2221 110 3 3 chr1 209577026 209577334 -33087019 - AluSg SINE Alu -2 308 1 2055 56 0 22 chr1 209579228 209579496 -33084857 - AluY SINE Alu -11 300 39 583 239 174 20 chr1 209579647 209579848 -33084505 - MIR SINE MIR -14 248 17 837 284 177 19 chr1 209580273 209580826 -33083527 - L2 LINE L2 0 3313 2680 22 35 0 0 chr1 209580839 209580868 -33083485 + AT_rich Low_complexity Low_complexity 1 29 0 372 288 5 103 chr1 209580895 209581079 -33083274 - MIR SINE MIR -66 196 31 201 412 31 0 chr1 209581122 209581219 -33083134 + MIR3 SINE MIR 9 108 -100 774 326 12 0 chr1 209581410 209581652 -33082701 + MIR SINE MIR 18 262 0 347 286 0 40 chr1 209582496 209582622 -33081731 + LTR33 LTR ERVL 26 146 -375 878 218 26 0 chr1 209582701 209582894 -33081459 + LTR33 LTR ERVL 324 521 0 357 299 148 55 chr1 209583329 209583635 -33080718 + L1ME4a LINE L1 5583 5936 -185 1821 171 10 3 chr1 209583635 209583933 -33080420 - AluJo SINE Alu -12 300 1 357 299 148 55 chr1 209583933 209584024 -33080329 + L1ME4a LINE L1 5936 6017 -104 235 304 14 0 chr1 209585017 209585086 -33079267 - L2 LINE L2 -8 3264 3195 288 111 0 0 chr1 209585825 209585870 -33078483 + (GA)n Simple_repeat Simple_repeat 2 46 0 431 287 21 21 chr1 209586572 209586715 -33077638 - MIR SINE MIR -82 180 38 339 44 0 0 chr1 209587748 209587793 -33076560 + (TC)n Simple_repeat Simple_repeat 1 45 0 988 200 0 29 chr1 209587805 209588010 -33076343 - AluJo SINE Alu -31 281 83 2479 64 0 0 chr1 209588758 209589054 -33075299 - AluY SINE Alu -15 296 1 2022 135 7 0 chr1 209589387 209589691 -33074662 - AluSx SINE Alu -2 310 5 623 147 70 0 chr1 209590287 209590416 -33073937 + FRAM SINE Alu 31 168 -8 1901 157 0 29 chr1 209590476 209590789 -33073564 - AluJb SINE Alu -8 304 1 2282 109 3 0 chr1 209591045 209591349 -33073004 - AluSp SINE Alu -6 307 3 11401 94 12 1 chr1 209591360 209593758 -33070595 - L1PA7 LINE L1 0 6154 3733 3104 167 40 0 chr1 209593858 209594428 -33069925 + L1MB1 LINE L1 5553 6145 -23 1508 243 45 13 chr1 209594454 209594920 -33069433 - L1M4 LINE L1 -1379 4767 4287 1991 117 0 7 chr1 209594974 209595247 -33069106 - AluSx SINE Alu -41 271 1 2113 139 3 0 chr1 209595252 209595555 -33068798 - AluSq SINE Alu -9 304 1 3203 126 32 2 chr1 209595824 209596355 -33067998 - MER41B LTR ERV1 -88 547 1 7493 122 27 34 chr1 209596357 209597671 -33066682 - MER41B-int LTR ERV1 -2 5944 4639 471 153 35 0 chr1 209597666 209597751 -33066602 - MER41B-int LTR ERV1 -5858 88 1 * 827 113 0 8 chr1 209597751 209597884 -33066469 - MER41B LTR ERV1 0 635 504 209 119 0 24 chr1 209599073 209599115 -33065238 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 660 237 46 52 chr1 209599559 209599732 -33064621 + L2 LINE L2 327 498 -2816 324 156 0 16 chr1 209599736 209599800 -33064553 - Charlie1 DNA MER1_type -6 2755 2693 2220 131 0 6 chr1 209599810 209600123 -33064230 - AluSx SINE Alu -1 311 1 2109 129 0 7 chr1 209600136 209600431 -33063922 - AluSx SINE Alu -19 293 1 205 329 114 0 chr1 209600460 209600530 -33063823 - L2 LINE L2 -26 3246 3169 312 305 21 0 chr1 209600966 209601061 -33063292 + MIR SINE MIR 48 144 -118 225 270 30 60 chr1 209601301 209601401 -33062952 - MIR SINE MIR -80 128 32 577 224 12 50 chr1 209602411 209602572 -33061781 - MIR SINE MIR 0 262 108 1298 190 127 9 chr1 209603306 209603622 -33060731 + MLT1A1 LTR MaLR 1 353 -12 565 184 86 69 chr1 209605174 209605348 -33059005 + MER5B DNA MER1_type 2 178 0 2196 108 0 3 chr1 209605479 209605775 -33058578 + AluSc SINE Alu 1 295 -14 1959 114 4 11 chr1 209606116 209606435 -33057918 + AluSg1 SINE Alu 31 347 0 1951 126 0 41 chr1 209607418 209607739 -33056614 + AluSx SINE Alu 1 309 0 995 213 73 25 chr1 209608074 209608388 -33055965 - MER46C DNA MER2_type -5 333 5 24 32 0 0 chr1 209608421 209608452 -33055901 + AT_rich Low_complexity Low_complexity 1 31 0 820 79 0 0 chr1 209610104 209610205 -33054148 + AluY SINE Alu 190 290 -21 195 167 0 24 chr1 209613747 209613789 -33050564 - MIR3 SINE MIR 0 208 168 213 224 0 0 chr1 209614814 209614872 -33049481 + (TA)n Simple_repeat Simple_repeat 1 58 0 2684 332 134 13 chr1 209615459 209617334 -33047019 + L2 LINE L2 1078 3187 -126 273 128 0 0 chr1 209617375 209617422 -33046931 + (CA)n Simple_repeat Simple_repeat 1 47 0 191 250 188 38 chr1 209617434 209617514 -33046839 + L2 LINE L2 3214 3305 -8 603 258 139 5 chr1 209618435 209618644 -33045709 + MIR SINE MIR 2 238 -24 22 35 0 0 chr1 209619647 209619676 -33044677 + AT_rich Low_complexity Low_complexity 1 29 0 324 48 0 0 chr1 209619988 209620030 -33044323 + (CA)n Simple_repeat Simple_repeat 2 43 0 185 0 0 39 chr1 209621519 209621545 -33042808 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1236 204 15 30 chr1 209621565 209621716 -33042637 - AluJo SINE Alu -43 269 122 186 43 0 0 chr1 209621716 209621739 -33042614 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1236 204 15 30 chr1 209621739 209621852 -33042501 - AluJo SINE Alu -190 122 9 330 26 0 0 chr1 209621889 209621928 -33042425 + (CA)n Simple_repeat Simple_repeat 2 40 0 273 245 31 31 chr1 209622327 209622425 -33041928 + CT-rich Low_complexity Low_complexity 3 100 0 2266 106 0 28 chr1 209623995 209624317 -33040036 - AluSq SINE Alu 0 313 1 272 346 123 59 chr1 209624771 209625176 -33039177 - L2 LINE L2 -15 3257 2827 376 216 54 0 chr1 209626336 209626447 -33037906 + L1ME LINE L1 5585 5701 -420 1447 335 65 35 chr1 209626478 209627152 -33037201 - L2 LINE L2 -5 3308 2600 1469 213 47 34 chr1 209627152 209627537 -33036816 - MLT1B LTR MaLR 0 390 1 1447 335 65 35 chr1 209627537 209627932 -33036421 - L2 LINE L2 -713 2600 2219 419 214 45 9 chr1 209627925 209628037 -33036316 + L2 LINE L2 2256 2371 -943 * 1363 251 120 52 chr1 209628100 209628643 -33035710 + MLT1E LTR MaLR 1 580 -13 1170 290 145 9 chr1 209628646 209629087 -33035266 + MLT2E LTR ERVL 61 561 -67 674 229 0 0 chr1 209629106 209629224 -33035129 + FLAM_A SINE Alu 1 118 -15 1632 296 81 19 chr1 209629304 209629558 -33034795 + L2 LINE L2 2376 2613 -700 2059 121 21 0 chr1 209629558 209629848 -33034505 - AluSg SINE Alu -14 296 1 1632 296 81 19 chr1 209629848 209630470 -33033883 + L2 LINE L2 2613 3313 0 1155 281 87 40 chr1 209630477 209631108 -33033245 - L2 LINE L2 -1041 2273 1613 892 209 34 11 chr1 209631561 209631738 -33032615 - AluSg/x SINE Alu -5 307 127 322 203 0 0 chr1 209631742 209631806 -33032547 + L1MC4 LINE L1 6640 6703 -1339 846 160 0 0 chr1 209631829 209631954 -33032399 - FLAM_C SINE Alu -18 125 1 339 294 143 0 chr1 209632034 209632160 -33032193 - MIR SINE MIR -62 200 57 439 227 34 0 chr1 209632219 209632338 -33032015 - Charlie1 DNA MER1_type -16 2745 2623 780 258 0 27 chr1 209632342 209632567 -33031786 - Charlie1 DNA MER1_type -2541 220 2 2319 81 0 0 chr1 209632966 209633262 -33031091 + AluY SINE Alu 2 297 -14 286 207 0 69 chr1 209633409 209633496 -33030857 - MLT1A2 LTR MaLR -293 81 1 338 273 117 16 chr1 209633570 209633698 -33030655 + L1M4 LINE L1 4020 4160 -1986 294 306 27 27 chr1 209633787 209633898 -33030455 + MLT1J2 LTR MaLR 100 210 -240 5341 250 75 26 chr1 209734227 209737471 -32926882 + L1ME1 LINE L1 2635 6071 -95 927 310 96 56 chr1 209737469 209738792 -32925561 - HAL1 LINE L1 -1043 1464 89 * 223 355 9 100 chr1 209739050 209739281 -32925072 + L2 LINE L2 2977 3186 -86 682 41 65 0 chr1 209739309 209739432 -32924921 + (TA)n Simple_repeat Simple_repeat 2 132 0 2404 56 0 0 chr1 209739432 209739717 -32924636 - AluY SINE Alu -22 289 5 234 62 0 0 chr1 209740111 209740143 -32924210 + (TG)n Simple_repeat Simple_repeat 2 33 0 2105 135 0 16 chr1 209742741 209743059 -32921294 + AluSq SINE Alu 1 313 0 6020 116 14 3 chr1 209743886 209744861 -32919492 + L1P3 LINE L1 4463 5451 -721 1069 127 0 30 chr1 209744907 209745072 -32919281 + AluSq SINE Alu 1 160 -153 5365 100 4 7 chr1 209745073 209745841 -32918512 + L1PA10 LINE L1 5392 6157 -11 288 357 42 7 chr1 209746654 209746797 -32917556 - MIR3 SINE MIR -7 201 54 1722 187 3 7 chr1 209749072 209749377 -32914976 - AluJo SINE Alu -6 306 3 1794 174 27 0 chr1 209750236 209750534 -32913819 + AluJb SINE Alu 1 306 -6 501 305 11 11 chr1 209752588 209752762 -32911591 + HAL1b LINE L1 385 558 -790 234 330 54 0 chr1 209752862 209752974 -32911379 + HAL1b LINE L1 598 715 -633 7110 199 12 5 chr1 209753445 209754970 -32909383 + L1PB1 LINE L1 2523 4058 -2088 2616 92 28 14 chr1 209754970 209755329 -32909024 - THE1B LTR MaLR 0 364 1 11623 98 5 6 chr1 209755334 209756910 -32907443 - THE1B-int LTR MaLR -6 1574 1 2467 104 36 14 chr1 209756910 209757266 -32907087 - THE1B LTR MaLR 0 364 1 5502 160 18 39 chr1 209757266 209757333 -32907020 + L1PB1 LINE L1 4054 4121 -2030 2594 201 24 64 chr1 209757333 209757971 -32906382 - LTR9 LTR ERV1 0 612 1 5502 160 18 39 chr1 209757971 209759698 -32904655 + L1PB1 LINE L1 4121 5801 -350 414 0 0 0 chr1 209759698 209759744 -32904609 + (TG)n Simple_repeat Simple_repeat 2 47 0 5502 160 18 39 chr1 209759744 209760053 -32904300 + L1PB1 LINE L1 5801 6115 -36 2552 142 45 10 chr1 209760215 209760871 -32903482 - MER72 LTR ERV1 0 722 12 1824 150 52 30 chr1 209761149 209761516 -32902837 + THE1C LTR MaLR 1 375 0 952 196 15 15 chr1 209761701 209761900 -32902453 - MLT1B LTR MaLR 0 390 192 356 217 109 33 chr1 209761980 209762016 -32902337 - MLT1B LTR MaLR -252 138 106 1148 161 19 103 chr1 209762016 209762123 -32902230 - MER8 DNA MER2_type 0 239 125 2147 111 0 0 chr1 209762123 209762412 -32901941 + AluY SINE Alu 6 294 -17 1148 161 19 103 chr1 209762412 209762565 -32901788 - MER8 DNA MER2_type -114 125 1 356 217 109 33 chr1 209762565 209762620 -32901733 - MLT1B LTR MaLR -284 106 40 1812 180 116 30 chr1 209762727 209763132 -32901221 + MSTB2 LTR MaLR 18 457 0 1253 220 27 39 chr1 209763177 209763325 -32901028 + MER58B DNA MER1_type 2 150 -2270 529 90 26 0 chr1 209763325 209763403 -32900950 + MADE1 DNA Mariner 1 80 0 1253 220 27 39 chr1 209763403 209763591 -32900762 + MER58B DNA MER1_type 150 334 -7 334 312 128 62 chr1 209764268 209764704 -32899649 - MLT1J LTR MaLR -42 469 5 2393 84 0 0 chr1 209764704 209765001 -32899352 - AluSc SINE Alu -10 299 3 2734 34 0 0 chr1 209765114 209765442 -32898911 + L1PA5 LINE L1 5827 6154 0 332 359 118 6 chr1 209765593 209765763 -32898590 - MIR SINE MIR -48 214 26 251 270 0 16 chr1 209766490 209766553 -32897800 + GA-rich Low_complexity Low_complexity 1 62 0 661 198 25 0 chr1 209766558 209766679 -32897674 + FLAM_C SINE Alu 1 124 -19 440 282 109 49 chr1 209767338 209767604 -32896749 - Charlie8 DNA MER1_type -2135 282 1 1383 250 43 37 chr1 209771412 209771876 -32892477 + MLT1C LTR MaLR 1 467 0 891 247 78 0 chr1 209771940 209772159 -32892194 - MIR SINE MIR -25 237 2 291 140 0 0 chr1 209772164 209772214 -32892139 + (TAA)n Simple_repeat Simple_repeat 3 52 0 244 209 0 0 chr1 209772416 209772459 -32891894 - tRNA-Ile-ATT tRNA tRNA -3 74 32 267 303 40 109 chr1 209772837 209773012 -32891341 - MIR3 SINE MIR -14 194 32 2135 89 10 16 chr1 209773149 209773462 -32890891 - AluY SINE Alu 0 311 1 198 291 58 29 chr1 209774629 209774732 -32889621 - L2 LINE L2 -188 3084 2979 2253 188 26 2 chr1 209775515 209775931 -32888422 + MSTB LTR MaLR 1 426 0 23 0 0 0 chr1 209778191 209778214 -32886139 + AT_rich Low_complexity Low_complexity 1 23 0 321 123 98 0 chr1 209778722 209778844 -32885509 + (TA)n Simple_repeat Simple_repeat 2 135 0 288 237 158 18 chr1 209778877 209778991 -32885362 + L2 LINE L2 3184 3313 0 270 307 119 75 chr1 209779382 209779793 -32884560 - L2 LINE L2 -32 3240 2812 392 194 25 181 chr1 209779930 209780090 -32884263 - MIR3 SINE MIR -39 169 35 981 25 0 0 chr1 209783687 209783806 -32880547 - L1P LINE L1 -1057 5089 4971 1097 129 0 6 chr1 209783807 209783970 -32880383 + AluSq SINE Alu 120 281 -32 240 35 0 0 chr1 209783970 209783999 -32880354 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 1974 141 3 0 chr1 209784008 209784305 -32880048 - AluSx SINE Alu -14 298 1 231 309 0 0 chr1 209785029 209785097 -32879256 + MIR SINE MIR 81 148 -60 25 75 0 0 chr1 209785321 209785374 -32878979 + AT_rich Low_complexity Low_complexity 1 53 0 497 99 0 0 chr1 209786009 209786080 -32878273 + MADE1 DNA Mariner 10 80 0 308 291 72 81 chr1 209786367 209786782 -32877571 - L1M4 LINE L1 -1088 5058 4648 2328 63 0 48 chr1 209786782 209787114 -32877239 + L1PA8 LINE L1 5857 6172 0 308 291 72 81 chr1 209787114 209787264 -32877089 - L1M4 LINE L1 -1498 4648 4498 718 297 44 0 chr1 209787265 209787447 -32876906 + MIR SINE MIR 2 191 -71 645 282 52 29 chr1 209788011 209788355 -32875998 - L1M4 LINE L1 -2164 3982 3631 352 278 102 23 chr1 209788737 209788913 -32875440 + L2 LINE L2 3075 3264 -49 2492 57 0 0 chr1 209789726 209790022 -32874331 - AluY SINE Alu -15 296 1 189 74 0 0 chr1 209790252 209790279 -32874074 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 24 0 0 0 chr1 209792211 209792235 -32872118 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 209796746 209796784 -32867569 + AT_rich Low_complexity Low_complexity 1 38 0 231 362 72 60 chr1 209797826 209798061 -32866292 + L2 LINE L2 3031 3268 -4 327 364 194 12 chr1 209798121 209798363 -32865990 - L2 LINE L2 -26 3246 2961 2000 151 51 0 chr1 209798609 209798940 -32865413 - MER7A DNA MER2_type 0 346 1 2039 130 3 16 chr1 209800270 209800694 -32863659 + AluSx SINE Alu 1 420 0 328 325 58 0 chr1 209804739 209804859 -32859494 + MIR SINE MIR 86 212 -50 1070 281 30 78 chr1 209805260 209805759 -32858594 - L2 LINE L2 0 3313 2839 * 1838 288 60 51 chr1 209805734 209806754 -32857599 - L2 LINE L2 -1047 2267 1239 186 43 0 0 chr1 209807901 209807924 -32856429 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 331 320 95 50 chr1 209809131 209809353 -32855000 - MIR SINE MIR -13 249 18 25 65 0 0 chr1 209809387 209809433 -32854920 + AT_rich Low_complexity Low_complexity 1 46 0 628 297 23 36 chr1 209809749 209809968 -32854385 - L3 LINE CR1 -1 1576 1361 289 213 52 118 chr1 209809995 209810131 -32854222 + MER94 DNA DNA 1 127 -7 362 316 37 7 chr1 209810244 209810380 -32853973 - L3 LINE CR1 -340 1237 1098 218 216 14 0 chr1 209810687 209810761 -32853592 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 329 277 74 14 chr1 209811333 209811481 -32852872 - L1ME4a LINE L1 -18 6103 5947 240 283 76 0 chr1 209811730 209811822 -32852531 - L1ME4a LINE L1 -538 5583 5485 222 202 24 16 chr1 209811834 209811964 -32852389 + (TA)n Simple_repeat Simple_repeat 1 131 0 310 321 0 0 chr1 209811967 209812051 -32852302 - L2 LINE L2 0 3313 3230 1865 179 68 11 chr1 209812099 209812468 -32851885 + L1MC1 LINE L1 5938 6327 -6 224 258 0 93 chr1 209812512 209812609 -32851744 - L2 LINE L2 -216 3097 3010 229 276 337 8 chr1 209812690 209812936 -32851417 - L2 LINE L2 -800 2514 2188 571 273 101 11 chr1 209813216 209813391 -32850962 + MIR SINE MIR 26 213 -49 1108 146 55 67 chr1 209813600 209814130 -32850223 - L1M1 LINE L1 -743 5403 4944 749 145 97 0 chr1 209814146 209814169 -32850184 - L1MA1 LINE L1 -4 6298 6279 612 101 0 0 chr1 209814169 209814258 -32850095 + (TA)n Simple_repeat Simple_repeat 1 89 0 749 145 97 0 chr1 209814258 209814379 -32849974 - L1MA1 LINE L1 -23 6279 6140 1335 117 22 5 chr1 209814381 209814603 -32849750 - L1PA15 LINE L1 -13 6152 5927 188 339 18 0 chr1 209814704 209814760 -32849593 - MIR SINE MIR -186 76 20 341 324 66 35 chr1 209814888 209815144 -32849209 - L2 LINE L2 -40 3273 3010 23 33 0 0 chr1 209815668 209815698 -32848655 + AT_rich Low_complexity Low_complexity 1 30 0 1074 80 0 0 chr1 209815790 209815927 -32848426 - AluSg/x SINE Alu -7 303 167 203 290 16 0 chr1 209816504 209816566 -32847787 + L2 LINE L2 3209 3271 -1 414 322 122 29 chr1 209816735 209816940 -32847413 - MIR SINE MIR -19 243 20 4999 37 0 0 chr1 209817323 209817920 -32846433 + L1PA3 LINE L1 5556 6152 -3 21 0 0 0 chr1 209819124 209819145 -32845208 + AT_rich Low_complexity Low_complexity 1 21 0 1593 179 3 63 chr1 209819384 209819702 -32844651 + AluJo SINE Alu 1 299 -13 1696 184 45 11 chr1 209819983 209820336 -32844017 + MLT1A1 LTR MaLR 1 365 0 405 353 5 26 chr1 209821058 209821248 -32843105 - MIR SINE MIR -57 205 20 418 260 85 34 chr1 209822224 209822401 -32841952 - MIR SINE MIR -17 245 60 21 0 0 0 chr1 209822902 209822923 -32841430 + AT_rich Low_complexity Low_complexity 1 21 0 698 281 47 21 chr1 209823379 209823614 -32840739 + MIR SINE MIR 1 241 -21 184 253 35 81 chr1 209823880 209823967 -32840386 - L2 LINE L2 -2940 374 292 703 237 15 61 chr1 209824306 209824504 -32839849 - MER5A DNA MER1_type 0 189 1 319 350 8 8 chr1 209824504 209824621 -32839732 - MIR3 SINE MIR -48 160 44 399 263 136 100 chr1 209824896 209825447 -32838906 - MLT1K LTR MaLR -16 572 2 830 128 8 0 chr1 209825625 209825742 -32838611 - FLAM_C SINE Alu -25 118 1 580 92 0 0 chr1 209827698 209827785 -32836568 + Alu SINE Alu 224 310 -2 207 0 0 0 chr1 209827950 209827973 -32836380 + (A)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr1 209828445 209828467 -32835886 + AT_rich Low_complexity Low_complexity 1 22 0 835 210 34 0 chr1 209828548 209828724 -32835629 + L1PA16 LINE L1 5976 6157 -9 24 0 0 0 chr1 209828724 209828748 -32835605 + AT_rich Low_complexity Low_complexity 1 24 0 193 338 29 15 chr1 209829014 209829082 -32835271 - L2 LINE L2 -50 3222 3154 331 200 78 63 chr1 209829638 209829767 -32834586 + MLT1H1 LTR MaLR 400 542 -13 423 305 71 25 chr1 209830598 209830795 -32833558 - MIR SINE MIR -37 225 20 596 350 77 14 chr1 209832642 209832939 -32831414 - L2 LINE L2 0 3272 2957 24 32 0 0 chr1 209834953 209834984 -32829369 + AT_rich Low_complexity Low_complexity 1 31 0 277 125 31 47 chr1 209835270 209835334 -32829019 + L1MC4 LINE L1 6640 6702 -1340 24 53 0 0 chr1 209835745 209835783 -32828570 + AT_rich Low_complexity Low_complexity 1 38 0 998 202 0 45 chr1 209836784 209836982 -32827371 + AluJo SINE Alu 85 273 -39 474 355 16 11 chr1 209837309 209837498 -32826855 + MIR SINE MIR 3 192 -70 192 366 15 30 chr1 209839785 209839916 -32824437 + MER5A DNA MER1_type 21 149 -40 27 0 0 0 chr1 209841381 209841408 -32822945 + AT_rich Low_complexity Low_complexity 1 27 0 355 111 0 0 chr1 209842106 209842160 -32822193 + L1MC1 LINE L1 6262 6315 -18 1874 232 97 40 chr1 209842862 209843418 -32820935 - MLT1E LTR MaLR 0 593 6 408 289 18 0 chr1 209844745 209844859 -32819494 + LTR67 LTR ERVL 430 545 -12 243 203 27 14 chr1 209844878 209844952 -32819401 + HAL1b LINE L1 1213 1287 -61 844 254 72 0 chr1 209845077 209845286 -32819067 + MER58A DNA MER1_type 1 224 0 741 151 40 0 chr1 209847599 209847725 -32816628 + MER3 DNA MER1_type 38 168 -41 1540 170 61 19 chr1 209847726 209847994 -32816359 + MER3 DNA MER1_type 2233 2523 -101 1884 146 7 17 chr1 209847994 209848295 -32816058 - AluSx SINE Alu -14 298 1 1540 170 61 19 chr1 209848295 209848402 -32815951 + MER3 DNA MER1_type 2523 2624 0 227 156 125 16 chr1 209849348 209849412 -32814941 + LTR66 LTR ERVL 368 438 -172 29 0 0 0 chr1 209850122 209850151 -32814202 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr1 209850651 209850677 -32813676 + AT_rich Low_complexity Low_complexity 1 26 0 621 309 108 25 chr1 209850846 209851442 -32812911 + L1ME4a LINE L1 5322 5986 -135 2071 116 7 20 chr1 209851462 209851763 -32812590 - AluSg1 SINE Alu -10 299 3 13106 38 1 6 chr1 209851874 209852806 -32811547 - L1P LINE L1 -2856 3290 2369 2805 22 0 0 chr1 209852806 209853124 -32811229 - AluYb8 SINE Alu 0 318 1 13106 38 1 6 chr1 209853124 209853847 -32810506 - L1P LINE L1 -3777 2369 1644 8617 30 0 0 chr1 209853847 209855681 -32808672 + L1PA4 LINE L1 4313 6153 -2 371 320 85 13 chr1 209855739 209856003 -32808350 + L2 LINE L2 2775 3060 -212 25 0 0 0 chr1 209857363 209857388 -32806965 + AT_rich Low_complexity Low_complexity 1 25 0 302 277 8 50 chr1 209860071 209860190 -32804163 - L1ME4a LINE L1 -2 6119 6006 25 0 0 0 chr1 209861303 209861328 -32803025 + AT_rich Low_complexity Low_complexity 1 25 0 412 354 94 28 chr1 209862264 209862837 -32801516 + L1MC4a LINE L1 4405 5015 -1131 1641 256 85 33 chr1 209862911 209863547 -32800806 + L1MC4a LINE L1 5260 5928 -1880 671 235 48 18 chr1 209866452 209866618 -32797735 - MER5A DNA MER1_type -14 175 5 186 300 178 22 chr1 209866570 209866750 -32797603 + L3 LINE CR1 1058 1265 -312 * 369 207 0 0 chr1 209867380 209867462 -32796891 + (CA)n Simple_repeat Simple_repeat 1 82 0 1975 149 0 0 chr1 209868627 209868923 -32795430 - AluSg SINE Alu -14 296 1 213 333 85 23 chr1 209868980 209869157 -32795196 - MIR SINE MIR -73 189 2 219 189 19 0 chr1 209869785 209869838 -32794515 + T-rich Low_complexity Low_complexity 2 55 0 183 129 0 0 chr1 209870987 209871018 -32793335 + (T)n Simple_repeat Simple_repeat 1 31 0 220 284 0 86 chr1 209872638 209872719 -32791634 - MIR SINE MIR -25 237 164 881 153 0 0 chr1 209872930 209873061 -32791292 + FLAM_C SINE Alu 1 131 -12 372 298 80 33 chr1 209873519 209873670 -32790683 + LTR50 LTR ERVL 26 183 -612 230 309 8 32 chr1 209873935 209874058 -32790295 + LTR33A LTR ERVL 404 523 0 216 0 0 0 chr1 209875099 209875123 -32789230 + (TTC)n Simple_repeat Simple_repeat 2 25 0 330 45 0 0 chr1 209875404 209875448 -32788905 + (CA)n Simple_repeat Simple_repeat 1 44 0 192 152 0 0 chr1 209875703 209875736 -32788617 + CT-rich Low_complexity Low_complexity 2 34 0 291 28 0 0 chr1 209876003 209876039 -32788314 + (CA)n Simple_repeat Simple_repeat 1 36 0 8040 174 25 19 chr1 209876407 209879057 -32785296 - L1PA16 LINE L1 -5 6161 3511 518 219 52 0 chr1 209879127 209879282 -32785071 + L1 LINE L1 3337 3499 -2647 617 266 80 0 chr1 209879287 209879475 -32784878 - L1 LINE L1 -3029 3117 2915 38 40 0 27 chr1 209879534 209879579 -32784774 + AT_rich Low_complexity Low_complexity 1 45 -27 1972 136 0 20 chr1 209879579 209879873 -32784480 - AluSg SINE Alu -22 288 1 38 40 0 27 chr1 209879873 209879901 -32784452 + AT_rich Low_complexity Low_complexity 45 72 0 1743 204 0 3 chr1 209879906 209880200 -32784153 + AluJb SINE Alu 1 293 -19 286 385 36 0 chr1 209880211 209880377 -32783976 - MIR SINE MIR -19 243 72 1431 208 66 55 chr1 209881034 209881460 -32782893 - THE1B LTR MaLR 0 428 1 213 354 61 11 chr1 209881498 209881679 -32782674 - L2 LINE L2 -504 2810 2621 843 193 39 0 chr1 209882048 209882229 -32782124 + L1MD1 LINE L1 6055 6242 0 379 249 75 90 chr1 209882310 209882511 -32781842 - MIR SINE MIR -41 221 24 984 267 97 71 chr1 209882631 209883433 -32780920 - L1ME3A LINE L1 -92 6078 5256 307 210 226 0 chr1 209883534 209883658 -32780695 - L1ME3A LINE L1 -3728 2418 2267 235 258 62 62 chr1 209883957 209884085 -32780268 + L1MC/D LINE L1 5784 5911 -1897 211 274 37 89 chr1 209884302 209884437 -32779916 + MIR SINE MIR 106 233 -29 348 355 9 9 chr1 209884816 209884923 -32779430 - L2 LINE L2 -32 3240 3134 2192 102 0 40 chr1 209885065 209885389 -32778964 - AluSq SINE Alu -2 311 1 891 272 66 60 chr1 209885816 209886331 -32778022 - LTR33 LTR ERVL -3 518 1 24 32 0 0 chr1 209887303 209887334 -32777019 + AT_rich Low_complexity Low_complexity 1 31 0 300 304 82 65 chr1 209887522 209887706 -32776647 + MIR SINE MIR 2 188 -74 192 125 0 0 chr1 209887735 209887767 -32776586 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1650 154 0 85 chr1 209888255 209888574 -32775779 - AluSx SINE Alu -20 292 1 343 306 65 16 chr1 209888948 209889072 -32775281 - L2 LINE L2 0 3313 3184 22 88 0 0 chr1 209889130 209889187 -32775166 + AT_rich Low_complexity Low_complexity 1 57 0 373 303 63 27 chr1 209889803 209890024 -32774329 + L1MC4a LINE L1 5702 5930 -1878 3145 177 62 11 chr1 209890151 209890813 -32773540 - L1MB2 LINE L1 0 6171 5476 309 247 25 12 chr1 209890828 209890909 -32773444 - L2 LINE L2 -10 3262 3181 222 287 10 59 chr1 209892047 209892148 -32772205 - MER5B DNA MER1_type -80 98 3 2430 88 0 0 chr1 209892882 209893188 -32771165 - AluY SINE Alu -5 306 1 235 374 24 16 chr1 209893195 209893318 -32771035 - MIR SINE MIR -63 145 22 23 33 0 0 chr1 209894670 209894700 -32769653 + AT_rich Low_complexity Low_complexity 1 30 0 351 0 0 0 chr1 209895638 209895677 -32768676 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 33 0 0 chr1 209897980 209898010 -32766343 + AT_rich Low_complexity Low_complexity 1 30 0 1862 160 3 0 chr1 209898045 209898345 -32766008 - AluSx SINE Alu -9 303 3 198 0 0 0 chr1 209898697 209898719 -32765634 + (T)n Simple_repeat Simple_repeat 1 22 0 225 345 69 17 chr1 209898834 209898950 -32765403 - L2 LINE L2 -2 3270 3149 539 305 36 6 chr1 209899500 209899667 -32764686 - MIR3 SINE MIR -6 202 31 335 305 11 0 chr1 209901902 209901997 -32762356 - MIR3 SINE MIR -8 200 105 323 303 55 0 chr1 209903330 209903439 -32760914 + L2 LINE L2 3199 3313 0 1030 315 64 20 chr1 209905564 209906091 -32758262 - L2 LINE L2 -237 3076 2530 2325 67 6 16 chr1 209906192 209906505 -32757848 + L1PA7 LINE L1 5845 6154 0 526 311 159 33 chr1 209906509 209907301 -32757052 - L2 LINE L2 -569 2745 1854 212 269 26 51 chr1 209907680 209907758 -32756595 + L2 LINE L2 3238 3313 0 232 258 23 159 chr1 209908054 209908186 -32756167 - MIR SINE MIR -67 141 78 2510 258 129 13 chr1 209908836 209909751 -32754602 - L2 LINE L2 -926 2388 1368 300 273 52 0 chr1 209909885 209909962 -32754391 + L2 LINE L2 2894 2974 -298 187 158 18 18 chr1 209910132 209910189 -32754164 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 2118 143 49 33 chr1 209911111 209911536 -32752817 - MSTB1 LTR MaLR 0 432 1 782 169 70 41 chr1 209911628 209911800 -32752553 - MLT2C2 LTR ERVL -8 456 280 739 72 10 0 chr1 209911801 209911898 -32752455 - THE1B LTR MaLR -1 363 266 303 300 32 63 chr1 209914599 209914661 -32749692 - L1MEc LINE L1 -3998 2398 2336 1919 158 48 0 chr1 209914661 209914991 -32749362 - MER7A DNA MER2_type 0 346 3 4216 184 38 13 chr1 209914998 209915838 -32748515 + MER6 DNA MER2_type 1 861 -4 303 300 32 63 chr1 209915838 209916020 -32748333 - L1MEc LINE L1 -4066 2330 2154 752 312 21 17 chr1 209916820 209917057 -32747296 + MIR SINE MIR 12 249 -13 662 228 19 31 chr1 209917896 209918058 -32746295 - MER5B DNA MER1_type -2 176 17 233 372 78 0 chr1 209919324 209919453 -32744900 - MER5A DNA MER1_type -49 140 2 245 224 0 17 chr1 209919690 209919748 -32744605 - MER5A DNA MER1_type -83 106 50 180 0 0 0 chr1 209919810 209919830 -32744523 + (CAA)n Simple_repeat Simple_repeat 2 21 0 279 217 22 22 chr1 209920411 209920503 -32743850 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 190 339 102 0 chr1 209920638 209920756 -32743597 + L2 LINE L2 3184 3313 0 1368 266 54 14 chr1 209921358 209921782 -32742571 - MLT1J LTR MaLR -70 441 1 1045 134 23 17 chr1 209921902 209922074 -32742279 - AluSc SINE Alu -17 292 120 183 42 0 0 chr1 209922078 209922102 -32742251 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 853 111 0 0 chr1 209922102 209922210 -32742143 - AluSq/x SINE Alu -184 128 21 21 57 0 0 chr1 209922451 209922486 -32741867 + AT_rich Low_complexity Low_complexity 1 35 0 213 94 0 0 chr1 209922799 209922831 -32741522 + (CA)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr1 209926232 209926252 -32738101 + (A)n Simple_repeat Simple_repeat 1 20 0 27 49 0 0 chr1 209926450 209926491 -32737862 + AT_rich Low_complexity Low_complexity 1 41 0 237 180 0 0 chr1 209927336 209927386 -32736967 + T-rich Low_complexity Low_complexity 1 50 0 258 379 92 24 chr1 209928428 209928766 -32735587 - L2 LINE L2 -963 2351 1991 2521 58 0 3 chr1 209928827 209929171 -32735182 + AluY SINE Alu 1 343 0 322 224 15 0 chr1 209929300 209929367 -32734986 - MIR SINE MIR -68 194 127 455 291 34 14 chr1 209929395 209929543 -32734810 - MIR SINE MIR -106 156 6 1353 147 5 0 chr1 209933427 209933638 -32730715 - MER2 DNA MER2_type -133 212 1 405 0 0 0 chr1 209933638 209933683 -32730670 + (CA)n Simple_repeat Simple_repeat 1 45 0 292 109 0 0 chr1 209934112 209934158 -32730195 - MADE1 DNA Mariner 0 80 35 231 265 69 34 chr1 209934460 209934554 -32729799 - MIR SINE MIR -68 140 58 253 351 0 0 chr1 209934586 209934663 -32729690 - L2 LINE L2 -52 3220 3144 521 251 48 42 chr1 209934816 209934983 -32729370 - MIR SINE MIR -77 185 18 247 383 17 17 chr1 209935382 209935502 -32728851 + L2 LINE L2 3104 3223 -49 326 325 102 38 chr1 209936253 209936410 -32727943 - MIR SINE MIR -94 168 2 1051 226 25 25 chr1 209936470 209936749 -32727604 - MLT1B LTR MaLR 0 390 112 261 286 140 30 chr1 209937319 209937655 -32726698 - L1ME4a LINE L1 -193 5928 5556 33 66 0 0 chr1 209937663 209937724 -32726629 + AT_rich Low_complexity Low_complexity 1 61 0 369 62 0 0 chr1 209939455 209939503 -32724850 + (TG)n Simple_repeat Simple_repeat 2 49 0 825 269 43 0 chr1 209940811 209941045 -32723308 - L1ME3A LINE L1 -13 6157 5914 1689 123 30 0 chr1 209941057 209941325 -32723028 + HSMAR2 DNA Mariner 2 277 -1025 2144 127 39 33 chr1 209942277 209942639 -32721714 + THE1B LTR MaLR 1 364 0 2663 85 95 5 chr1 209943511 209943922 -32720431 + LTR7 LTR ERV1 1 448 -2 16650 101 27 21 chr1 209943924 209946768 -32717585 + HERVH LTR ERV1 1 2987 -4726 871 141 18 47 chr1 209946740 209946910 -32717443 + HERVH LTR ERV1 3126 3290 -4423 * 3356 97 6 20 chr1 209946900 209947340 -32717013 + HERVH LTR ERV1 3492 3926 -3787 1499 12 0 0 chr1 209947340 209947506 -32716847 - AluYb8 SINE Alu -4 314 149 3356 97 6 20 chr1 209947506 209947573 -32716780 + HERVH LTR ERV1 3926 3992 -3721 4334 137 9 1 chr1 209947576 209948233 -32716120 + HERVH LTR ERV1 4488 5149 -2564 1352 134 18 5 chr1 209948234 209948451 -32715902 + HERVH LTR ERV1 5600 5819 -1894 1563 140 51 34 chr1 209948587 209948879 -32715474 - THE1B LTR MaLR -67 297 1 1993 223 114 67 chr1 209948910 209949593 -32714760 - MER21B LTR ERV1 -83 848 2 1667 157 18 14 chr1 209949594 209949875 -32714478 - MLT2C2 LTR ERVL -182 282 1 341 322 7 49 chr1 209950483 209950626 -32713727 - MIR3 SINE MIR -36 172 36 274 288 0 0 chr1 209951078 209951137 -32713216 - L2 LINE L2 -4 3268 3210 21 0 0 0 chr1 209951259 209951280 -32713073 + AT_rich Low_complexity Low_complexity 1 21 0 390 280 109 58 chr1 209951491 209951884 -32712469 + LTR33 LTR ERVL 106 518 -3 210 128 0 0 chr1 209952802 209952841 -32711512 + (TG)n Simple_repeat Simple_repeat 2 40 0 232 276 8 0 chr1 209952841 209952940 -32711413 + GA-rich Low_complexity Low_complexity 1 99 0 4352 63 0 4 chr1 209953722 209954280 -32710073 - L1PA5 LINE L1 -4 6150 5595 1813 45 0 0 chr1 209954280 209954500 -32709853 + L1PA5 LINE L1 5377 5596 -558 234 0 0 0 chr1 209958350 209958376 -32705977 + (TC)n Simple_repeat Simple_repeat 1 26 0 952 141 0 23 chr1 209958891 209959068 -32705285 + L1MB3 LINE L1 6010 6182 -1 296 313 73 20 chr1 209959558 209959708 -32704645 - MER91A DNA MER1_type -36 160 3 269 281 11 47 chr1 209960129 209960221 -32704132 + MER5A DNA MER1_type 75 174 -15 614 235 59 41 chr1 209961013 209961234 -32703119 + MIR SINE MIR 29 253 -9 341 238 25 8 chr1 209961575 209961697 -32702656 + (TA)n Simple_repeat Simple_repeat 2 125 0 24 91 0 0 chr1 209961746 209961812 -32702541 + AT_rich Low_complexity Low_complexity 1 66 0 1707 92 64 4 chr1 209963887 209964168 -32700185 + HSMAR2 DNA Mariner 1003 1300 -2 219 218 0 0 chr1 209964603 209964658 -32699695 + (TA)n Simple_repeat Simple_repeat 1 55 0 2247 166 104 2 chr1 209965489 209965912 -32698441 - MLT1C LTR MaLR 0 467 2 1295 199 38 115 chr1 209966165 209966668 -32697685 - MLT1C LTR MaLR -3 464 1 1422 133 64 17 chr1 209967224 209967457 -32696896 - AluJb SINE Alu -10 302 59 292 342 29 67 chr1 209967504 209967744 -32696609 + L2 LINE L2 2808 3038 -234 567 227 59 71 chr1 209967820 209968058 -32696295 - MLT1J1 LTR MaLR -61 385 151 1720 233 88 11 chr1 209968064 209968615 -32695738 - MLT1E2 LTR MaLR -50 576 1 333 306 65 0 chr1 209968655 209968763 -32695590 + MIR SINE MIR 105 219 -43 186 200 0 44 chr1 209968911 209968956 -32695397 - L2 LINE L2 -1 3312 3270 516 107 5 59 chr1 209970427 209970614 -32693739 + (TA)n Simple_repeat Simple_repeat 1 177 0 506 94 32 53 chr1 209970626 209971106 -32693247 + (TA)n Simple_repeat Simple_repeat 1 469 0 654 97 0 0 chr1 209971117 209971210 -32693143 - L1P4 LINE L1 -376 5787 5695 2005 132 4 0 chr1 209972659 209972978 -32691375 - AluSx SINE Alu 0 320 1 323 328 2 74 chr1 209972987 209973162 -32691191 - MIR SINE MIR -63 145 28 1795 196 28 45 chr1 209973615 209974012 -32690341 - MLT1B LTR MaLR 0 390 1 315 345 88 6 chr1 209974294 209974465 -32689888 + L2 LINE L2 3124 3308 -5 21 71 0 0 chr1 209974746 209974788 -32689565 + AT_rich Low_complexity Low_complexity 1 42 0 1369 279 58 48 chr1 210175567 210176083 -32488270 - MLT1E LTR MaLR -72 521 1 350 228 98 32 chr1 210176088 210176211 -32488142 - MLT1H LTR MaLR 0 593 463 528 311 8 66 chr1 210176301 210176558 -32487795 - MLT1H LTR MaLR -285 264 23 338 252 216 27 chr1 210176577 210176688 -32487665 - MIR SINE MIR -108 154 23 180 278 139 35 chr1 210177192 210177307 -32487046 + L2 LINE L2 2712 2838 -476 763 178 11 19 chr1 210177779 210178145 -32486208 + GA-rich Low_complexity Low_complexity 1 363 0 2167 57 43 14 chr1 210179321 210179646 -32484707 + AluY SINE Alu 1 311 0 225 0 0 0 chr1 210179647 210179672 -32484681 + (TA)n Simple_repeat Simple_repeat 2 26 0 2221 90 0 27 chr1 210179672 210179973 -32484380 + AluY SINE Alu 2 294 -17 460 291 151 49 chr1 210181777 210182248 -32482105 - L1M4 LINE L1 -5940 602 84 1725 186 3 0 chr1 210182357 210182642 -32481711 - AluSx SINE Alu -24 288 3 1334 216 14 24 chr1 210184353 210184644 -32479709 + AluJo SINE Alu 3 290 -22 1619 179 7 13 chr1 210186106 210186408 -32477945 - AluSc SINE Alu -7 302 3 345 383 63 30 chr1 210187253 210187556 -32476797 + L2 LINE L2 2946 3258 -14 1033 269 33 0 chr1 210187766 210188037 -32476316 + AluJb SINE Alu 1 280 -32 2206 169 22 36 chr1 210188263 210188708 -32475645 + LTR22B LTR ERVK 54 492 0 318 250 52 29 chr1 210188975 210189111 -32475242 + L1MC3 LINE L1 5880 6018 -1767 1138 124 21 16 chr1 210189239 210189425 -32474928 + AluY SINE Alu 2 188 -123 1978 208 31 7 chr1 210189525 210189948 -32474405 + LTR22 LTR ERVK 146 578 -2 567 171 138 48 chr1 210189980 210190190 -32474163 - MER52C LTR ERV1 -160 1118 890 775 227 41 77 chr1 210190194 210190612 -32473741 - L1M4 LINE L1 -942 5204 4802 23 33 0 0 chr1 210191688 210191718 -32472635 + AT_rich Low_complexity Low_complexity 1 30 0 1761 170 3 0 chr1 210192397 210192680 -32471673 - AluSg SINE Alu -26 284 1 1340 180 9 0 chr1 210192746 210192968 -32471385 + AluSx SINE Alu 3 226 -86 192 200 0 0 chr1 210192997 210193037 -32471316 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 291 191 0 0 chr1 210193047 210193115 -32471238 + (CA)n Simple_repeat Simple_repeat 2 69 0 305 167 9 185 chr1 210195618 210195845 -32468508 - MER53 DNA DNA -1 188 2 582 106 0 87 chr1 210196764 210196868 -32467485 - AluY SINE Alu -215 96 2 225 0 0 0 chr1 210196868 210196893 -32467460 + (TA)n Simple_repeat Simple_repeat 2 26 0 2167 57 43 14 chr1 210196894 210197219 -32467134 - AluY SINE Alu 0 311 1 192 439 32 0 chr1 210199502 210199625 -32464728 + L2 LINE L2 1129 1255 -2059 394 332 69 9 chr1 210199627 210199859 -32464494 - L1ME LINE L1 -465 5656 5411 22 56 0 0 chr1 210200002 210200038 -32464315 + AT_rich Low_complexity Low_complexity 1 36 0 395 134 0 0 chr1 210200038 210200105 -32464248 - L1PA8 LINE L1 -5 6167 6101 23 78 0 0 chr1 210200166 210200217 -32464136 + AT_rich Low_complexity Low_complexity 1 51 0 1490 179 9 80 chr1 210200240 210200565 -32463788 + AluJb SINE Alu 1 302 -10 494 303 103 45 chr1 210200818 210201264 -32463089 - HAL1b LINE L1 -632 716 245 223 389 111 39 chr1 210201739 210202171 -32462182 + L2 LINE L2 2808 3270 -2 1093 234 0 14 chr1 210202235 210202457 -32461896 - MER8 DNA MER2_type 0 239 21 300 271 107 33 chr1 210205322 210205444 -32458909 + HAL1 LINE L1 1214 1344 -1163 961 92 29 12 chr1 210206271 210206303 -32458050 + CT-rich Low_complexity Low_complexity 1 208 0 961 92 29 12 chr1 210206303 210206476 -32457877 + CT-rich Low_complexity Low_complexity 3 178 0 30 27 0 0 chr1 210207209 210207246 -32457107 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr1 210207953 210207974 -32456379 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 6423 135 20 12 chr1 210207976 210209032 -32455321 + Tigger1 DNA MER2_type 55 1118 -1300 275 200 55 0 chr1 210209024 210209079 -32455274 + Tigger2 DNA MER2_type 2658 2715 -3 * 1509 246 17 2 chr1 210209163 210209551 -32454802 + L1MC4 LINE L1 6606 7075 -818 1735 224 103 63 chr1 210209565 210209932 -32454421 + L1MC4 LINE L1 7238 7589 -453 3745 54 0 0 chr1 210209932 210210396 -32453957 - L1PA4 LINE L1 -3 6152 5689 1735 224 103 63 chr1 210210396 210210704 -32453649 + L1MC4 LINE L1 7589 8026 -16 296 343 0 15 chr1 210210728 210210862 -32453491 - L2 LINE L2 -1455 1859 1728 21 0 0 0 chr1 210212228 210212249 -32452104 + AT_rich Low_complexity Low_complexity 1 21 0 1510 296 139 36 chr1 210212441 210213116 -32451237 + L3 LINE CR1 676 1420 -157 2055 113 9 38 chr1 210213495 210213813 -32450540 - AluSg1 SINE Alu 0 309 1 2136 126 3 7 chr1 210213814 210214124 -32450229 - AluSx SINE Alu -3 309 1 318 329 26 26 chr1 210214142 210214259 -32450094 + MIR SINE MIR 111 230 -32 2009 109 7 40 chr1 210214259 210214562 -32449791 - AluSg SINE Alu -17 293 1 318 329 26 26 chr1 210214562 210214596 -32449757 + MIR SINE MIR 229 262 0 891 212 0 0 chr1 210217726 210217896 -32446457 - L1MC1 LINE L1 -27 6306 6137 957 235 11 0 chr1 210218281 210218464 -32445889 + MER58A DNA MER1_type 1 185 -39 1340 198 80 60 chr1 210219330 210219784 -32444569 - MLT1C LTR MaLR 0 467 1 377 310 72 76 chr1 210220132 210220590 -32443763 - L1ME4a LINE L1 -2 6119 5664 550 294 25 76 chr1 210220714 210220952 -32443401 + MIR SINE MIR 32 257 -5 21 0 0 0 chr1 210221211 210221232 -32443121 + AT_rich Low_complexity Low_complexity 1 21 0 2278 90 13 0 chr1 210221232 210221531 -32442822 - AluSq SINE Alu -10 303 1 340 219 28 146 chr1 210221556 210221734 -32442619 - L1ME4a LINE L1 -453 5668 5512 733 290 54 24 chr1 210222048 210222376 -32441977 - L1ME3 LINE L1 -2 6963 6623 * 1700 262 119 32 chr1 210222357 210223473 -32440880 - L1ME3 LINE L1 -542 6415 5183 5008 132 47 11 chr1 210223473 210224305 -32440048 - L1MC1 LINE L1 -6 6327 5466 1700 262 119 32 chr1 210224305 210224435 -32439918 - L1ME3 LINE L1 -1774 5183 5066 283 311 79 28 chr1 210224707 210224884 -32439469 + MIR SINE MIR 77 262 0 209 271 56 65 chr1 210224882 210224989 -32439364 + MIR SINE MIR 104 209 -53 * 687 256 92 64 chr1 210227296 210227764 -32436589 + L1ME4a LINE L1 5571 6051 -70 25 31 0 0 chr1 210227785 210227817 -32436536 + AT_rich Low_complexity Low_complexity 1 32 0 376 313 116 43 chr1 210228037 210228274 -32436079 + MIR SINE MIR 9 261 -1 1259 284 41 49 chr1 210228504 210228803 -32435550 - L1ME3 LINE L1 -4604 2518 2218 1990 110 18 11 chr1 210228803 210229164 -32435189 - AluSx SINE Alu 0 363 1 1259 284 41 49 chr1 210229164 210229917 -32434436 - L1ME3 LINE L1 -4904 2218 1263 360 319 22 32 chr1 210230277 210230462 -32433891 - L1ME3 LINE L1 -6224 199 17 4091 298 125 28 chr1 210230933 210233134 -32431219 + L2 LINE L2 901 3313 0 4385 174 19 8 chr1 210233139 210233914 -32430439 + MSTA-int LTR MaLR 868 1651 0 2214 154 97 0 chr1 210233914 210234304 -32430049 + MSTA LTR MaLR 1 428 0 3330 112 77 0 chr1 210234343 210234852 -32429501 - MER41B LTR ERV1 -87 548 1 13160 128 13 8 chr1 210234853 210236949 -32427404 - MER41B-int LTR ERV1 -3 5943 3838 6174 115 62 4 chr1 210236940 210237919 -32426434 - MER41B-int LTR ERV1 -2576 3160 2162 * 4971 127 38 17 chr1 210237910 210239635 -32424718 - MER41B-int LTR ERV1 -3929 2017 1 * 269 79 0 0 chr1 210239635 210239673 -32424680 - MER41B LTR ERV1 0 635 598 691 102 60 1 chr1 210240125 210240246 -32424107 - MER41A LTR ERV1 -29 528 398 1094 208 144 19 chr1 210240648 210240912 -32423441 - AluJo SINE Alu -4 298 2 16669 117 15 6 chr1 210241186 210244105 -32420248 - L1PA8 LINE L1 -9 6163 3203 207 0 0 0 chr1 210244105 210244128 -32420225 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 16669 117 15 6 chr1 210244128 210244600 -32419753 - L1PA8 LINE L1 -2969 3203 2737 378 200 0 0 chr1 210244756 210244831 -32419522 - MER116 DNA Mariner 0 80 6 320 292 73 26 chr1 210245216 210245408 -32418945 - L1P4 LINE L1 -571 5595 5395 903 294 119 50 chr1 210245727 210246635 -32417718 - L1 LINE L1 -1156 4990 4020 782 266 25 0 chr1 210246808 210247007 -32417346 + MIR SINE MIR 59 262 0 667 254 60 32 chr1 210247291 210247574 -32416779 - L1M4c LINE L1 -1017 5627 5337 * 6992 246 46 30 chr1 210247572 210250896 -32413457 - L1M4c LINE L1 -1777 4867 1302 799 138 15 8 chr1 210250896 210251026 -32413327 - FLAM_C SINE Alu -1 132 2 6992 246 46 30 chr1 210251026 210252344 -32412009 - L1M4c LINE L1 -5342 1302 8 407 299 85 18 chr1 210252342 210252673 -32411680 - L1M4 LINE L1 -1651 4993 4641 * 197 361 14 0 chr1 210253151 210253223 -32411130 - MIR3 SINE MIR -15 193 121 1128 265 83 56 chr1 210253309 210254039 -32410314 + L2 LINE L2 2561 3313 0 260 220 0 0 chr1 210254336 210254386 -32409967 - MLT1C LTR MaLR -2 465 416 244 222 0 42 chr1 210255316 210255388 -32408965 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 25 90 0 0 chr1 210255665 210255732 -32408621 + AT_rich Low_complexity Low_complexity 1 67 0 1215 248 84 30 chr1 210258908 210259348 -32405005 - MLT1C LTR MaLR -3 464 1 307 106 30 0 chr1 210260884 210260950 -32403403 + (TA)n Simple_repeat Simple_repeat 1 68 0 1798 175 6 13 chr1 210261552 210261866 -32402487 - AluJb SINE Alu 0 312 1 225 289 22 11 chr1 210263009 210263099 -32401254 + L1MC/D LINE L1 4895 4985 -1161 22 35 0 0 chr1 210263122 210263151 -32401202 + AT_rich Low_complexity Low_complexity 1 29 0 375 290 140 19 chr1 210263367 210263674 -32400679 + L1MC/D LINE L1 5255 5598 -2210 1035 140 51 15 chr1 210263755 210264117 -32400236 - MSTB LTR MaLR 0 426 3 1963 126 3 19 chr1 210266312 210266621 -32397732 - AluSx SINE Alu -8 304 1 2110 114 14 4 chr1 210266622 210267120 -32397233 - L1PA11 LINE L1 -11 6163 5493 1041 129 24 0 chr1 210267111 210267281 -32397072 + L1P LINE L1 5160 5333 -813 * 458 86 0 0 chr1 210267312 210267382 -32396971 - L1P4 LINE L1 -805 5369 5300 1067 80 7 0 chr1 210267386 210267537 -32396816 + L1P4 LINE L1 5343 5494 -680 568 168 42 0 chr1 210268432 210268551 -32395802 - L1MD1 LINE L1 0 6242 6119 803 286 15 23 chr1 210268574 210268840 -32395513 - L1ME1 LINE L1 -12 6154 5891 30 0 0 0 chr1 210269718 210269748 -32394605 + AT_rich Low_complexity Low_complexity 1 30 0 359 324 108 23 chr1 210269955 210270131 -32394222 + L1MEd LINE L1 1360 1550 -4866 328 204 98 98 chr1 210270240 210270372 -32393981 + HAL1 LINE L1 1436 1567 -940 1507 181 53 24 chr1 210270708 210270858 -32393495 + L1MCa LINE L1 576 720 -5887 1904 168 14 38 chr1 210270858 210271203 -32393150 + MER1B DNA MER1_type 1 337 0 1507 181 53 24 chr1 210271203 210271333 -32393020 + L1MCa LINE L1 720 845 -5762 237 33 0 0 chr1 210271333 210271363 -32392990 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1507 181 53 24 chr1 210271363 210272429 -32391924 + L1MCa LINE L1 845 2239 -4368 3239 197 25 27 chr1 210272543 210273805 -32390548 + L1M3f LINE L1 3 1368 -4071 1344 171 66 31 chr1 210273798 210274120 -32390233 + L1MCa LINE L1 2167 2500 -3926 * 1394 186 10 14 chr1 210274114 210274409 -32389944 + L1MCa LINE L1 3906 4199 -2227 23 33 0 0 chr1 210275249 210275279 -32389074 + AT_rich Low_complexity Low_complexity 1 30 0 774 164 0 50 chr1 210277061 210277201 -32387152 + FLAM_C SINE Alu 1 133 0 401 316 0 8 chr1 210277349 210277466 -32386887 - L2 LINE L2 -18 3295 3180 2244 100 0 0 chr1 210278122 210278412 -32385941 - AluSg1 SINE Alu -17 292 3 211 295 20 51 chr1 210279032 210279149 -32385204 + MIR SINE MIR 50 192 -70 821 266 21 0 chr1 210279903 210280095 -32384258 + MIR SINE MIR 2 197 -65 270 179 0 0 chr1 210280095 210280151 -32384202 + (TG)n Simple_repeat Simple_repeat 2 57 0 195 208 42 21 chr1 210280179 210280227 -32384126 + MIR SINE MIR 208 256 -6 379 364 63 5 chr1 210281259 210281465 -32382888 + L2 LINE L2 2738 2955 -359 639 295 72 13 chr1 210281987 210282224 -32382129 + MIR SINE MIR 12 262 0 206 340 113 19 chr1 210283333 210283439 -32380914 - L2 LINE L2 -8 3264 3149 196 352 144 8 chr1 210285192 210285456 -32378897 - L2 LINE L2 -1269 2045 1746 21 0 0 0 chr1 210286011 210286032 -32378321 + AT_rich Low_complexity Low_complexity 1 21 0 23 92 0 0 chr1 210286388 210286453 -32377900 + AT_rich Low_complexity Low_complexity 1 65 0 335 282 72 44 chr1 210286505 210286686 -32377667 + MLT1I LTR MaLR 26 211 -198 207 209 0 0 chr1 210286943 210286986 -32377367 - L2 LINE L2 0 3313 3271 559 273 40 11 chr1 210287133 210287475 -32376878 + L1ME LINE L1 5063 5518 -648 237 229 33 0 chr1 210287475 210287536 -32376817 + (TA)n Simple_repeat Simple_repeat 2 64 0 28 61 0 0 chr1 210287536 210287585 -32376768 + AT_rich Low_complexity Low_complexity 1 49 0 2337 64 0 3 chr1 210287669 210287967 -32376386 + AluY SINE Alu 1 297 -14 598 250 8 52 chr1 210288216 210288484 -32375869 + L1M4 LINE L1 3874 4129 -2017 390 291 66 11 chr1 210288662 210288844 -32375509 + MER96B DNA MER1_type? 3 194 -223 328 284 144 19 chr1 210289190 210289405 -32374948 + L1ME3A LINE L1 2317 2558 -3588 332 324 91 36 chr1 210289506 210289781 -32374572 + L1ME3A LINE L1 5304 5593 -569 242 297 69 21 chr1 210289782 210289927 -32374426 + L1ME3A LINE L1 5795 5946 -224 10024 139 43 11 chr1 210289949 210293491 -32370862 + L1PBa LINE L1 11 3822 -3040 1297 128 23 0 chr1 210293494 210293712 -32370641 + Tigger7 DNA MER2_type 411 633 -1854 255 259 37 0 chr1 210293794 210293848 -32370505 + Tigger7 DNA MER2_type 2431 2486 -1 29 28 0 0 chr1 210293943 210293979 -32370374 + AT_rich Low_complexity Low_complexity 1 36 0 255 250 18 0 chr1 210294169 210294225 -32370128 - L2 LINE L2 -1 3271 3215 192 255 0 39 chr1 210296610 210296661 -32367692 - L2 LINE L2 -14 3299 3251 1819 128 7 27 chr1 210297011 210297309 -32367044 + AluSx SINE Alu 11 302 -10 302 278 147 56 chr1 210298795 210298912 -32365441 - L1ME LINE L1 -350 5771 5666 2438 58 0 7 chr1 210298912 210299207 -32365146 + AluY SINE Alu 4 296 -15 302 278 147 56 chr1 210299207 210299355 -32364998 - L1ME LINE L1 -455 5666 5482 249 278 40 99 chr1 210300531 210300682 -32363671 - MIR SINE MIR -18 244 103 394 325 114 5 chr1 210300770 210300981 -32363372 - MIR SINE MIR 0 262 30 22 56 0 0 chr1 210302809 210302845 -32361508 + AT_rich Low_complexity Low_complexity 1 36 0 304 319 44 39 chr1 210302881 210303063 -32361290 + L1MC/D LINE L1 3984 4166 -1980 303 320 49 25 chr1 210303330 210303452 -32360901 + L1MC/D LINE L1 5511 5635 -2173 24 67 0 0 chr1 210303892 210303937 -32360416 + AT_rich Low_complexity Low_complexity 1 45 0 4500 191 57 42 chr1 210304018 210304727 -32359626 + Tigger6a DNA MER2_type 1 698 -899 2353 76 0 0 chr1 210304727 210305029 -32359324 + AluY SINE Alu 1 302 -9 4500 191 57 42 chr1 210305029 210305295 -32359058 + Tigger6a DNA MER2_type 698 996 -601 900 139 0 0 chr1 210305295 210305439 -32358914 + L1MA2 LINE L1 6161 6304 0 4500 191 57 42 chr1 210305439 210305512 -32358841 + Tigger6a DNA MER2_type 996 1066 -17 203 0 0 36 chr1 210306105 210306133 -32358220 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 249 312 65 0 chr1 210306556 210306633 -32357720 - L2 LINE L2 -55 3217 3136 698 330 92 28 chr1 210306682 210307374 -32356979 - L2 LINE L2 -264 3008 2268 433 236 14 100 chr1 210307507 210307647 -32356706 + L2 LINE L2 3185 3312 -1 265 175 0 35 chr1 210307646 210307703 -32356650 - L2 LINE L2 -1047 2267 2213 * 21 36 0 0 chr1 210307714 210307742 -32356611 + AT_rich Low_complexity Low_complexity 1 28 0 207 352 11 22 chr1 210310038 210310129 -32354224 + L2 LINE L2 3221 3310 -3 505 277 9 0 chr1 210310521 210310633 -32353720 + MER63A DNA MER1_type 98 210 0 1574 217 41 27 chr1 210310701 210311185 -32353168 - L1M4 LINE L1 -2102 4044 3554 1925 145 13 74 chr1 210311228 210311299 -32353054 - THE1B LTR MaLR 0 364 290 1666 130 50 40 chr1 210311299 210311604 -32352749 - AluSg SINE Alu 0 308 1 1925 145 13 74 chr1 210311604 210311911 -32352442 - THE1B LTR MaLR -74 290 8 9384 114 43 36 chr1 210311912 210313477 -32350876 - THE1C-int LTR MaLR -3 1577 2 2258 123 25 8 chr1 210313478 210313845 -32350508 - THE1C LTR MaLR 0 375 3 24 32 0 0 chr1 210313883 210313914 -32350439 + AT_rich Low_complexity Low_complexity 1 31 0 249 159 0 0 chr1 210313915 210313959 -32350394 + (TA)n Simple_repeat Simple_repeat 1 44 0 4459 220 67 37 chr1 210314457 210314661 -32349692 + L1MB8 LINE L1 4043 4239 -1939 2155 105 0 13 chr1 210314661 210314966 -32349387 + AluY SINE Alu 1 301 -10 4459 220 67 37 chr1 210314966 210316518 -32347835 + L1MB8 LINE L1 4239 5849 -329 455 267 155 12 chr1 210318388 210318549 -32345804 - MER5A DNA MER1_type -2 187 4 410 296 75 49 chr1 210320029 210320448 -32343905 - MLT1I LTR MaLR -6 403 5 220 150 50 0 chr1 210320995 210321035 -32343318 + (TAGG)n Simple_repeat Simple_repeat 1 42 0 2406 105 19 14 chr1 210321110 210321472 -32342881 + THE1B LTR MaLR 1 364 0 290 380 73 5 chr1 210321806 210322011 -32342342 - MIR SINE MIR -22 240 22 324 333 0 19 chr1 210323960 210324065 -32340288 - MER5A DNA MER1_type 0 189 87 204 315 22 22 chr1 210324391 210324483 -32339870 - L2 LINE L2 0 3272 3181 23 33 0 0 chr1 210324518 210324548 -32339805 + AT_rich Low_complexity Low_complexity 1 30 0 2528 266 68 16 chr1 210325506 210326591 -32337762 + L1M4 LINE L1 3080 4221 -1925 183 259 222 44 chr1 210326799 210326934 -32337419 - L2 LINE L2 -436 2878 2720 514 268 51 6 chr1 210326984 210327141 -32337212 - MER97a DNA MER1_type? -715 179 16 877 205 0 12 chr1 210327176 210327337 -32337016 + FRAM SINE Alu 1 159 -7 224 360 37 59 chr1 210328491 210328555 -32335798 + MIR3 SINE MIR 14 78 -130 2178 122 48 23 chr1 210328555 210328908 -32335445 - THE1B LTR MaLR 0 364 3 224 360 37 59 chr1 210328908 210328979 -32335374 + MIR3 SINE MIR 78 146 -62 830 281 66 77 chr1 210328999 210329391 -32334962 - L2 LINE L2 -78 3235 2848 501 203 34 17 chr1 210329587 210329705 -32334648 - MIR SINE MIR -14 248 129 245 270 191 52 chr1 210329869 210330099 -32334254 + MIR SINE MIR 1 262 0 237 325 64 45 chr1 210330140 210330297 -32334056 - L2 LINE L2 0 3272 3113 1543 286 112 2 chr1 210330482 210331053 -32333300 + L2 LINE L2 1606 2239 -1075 32 26 0 0 chr1 210331092 210331131 -32333222 + AT_rich Low_complexity Low_complexity 1 39 0 292 173 13 40 chr1 210331131 210331206 -32333147 + L2 LINE L2 2474 2546 -768 196 169 0 62 chr1 210331293 210331358 -32332995 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 729 293 68 39 chr1 210331415 210331797 -32332556 - HAL1 LINE L1 -736 1771 1379 9837 166 48 23 chr1 210331840 210332372 -32331981 - L1MA5 LINE L1 0 6942 6425 199 51 0 51 chr1 210332372 210332411 -32331942 + (TA)n Simple_repeat Simple_repeat 1 37 0 9837 166 48 23 chr1 210332411 210333455 -32330898 - L1MA5 LINE L1 -517 6425 5409 2034 132 0 0 chr1 210333455 210333744 -32330609 + AluSx SINE Alu 7 295 -17 9837 166 48 23 chr1 210333744 210335269 -32329084 - L1MA5 LINE L1 -1533 5409 3766 4312 260 14 20 chr1 210335241 210336383 -32327970 - L1MA5 LINE L1 -4517 2272 1138 * 525 340 84 69 chr1 210336454 210336582 -32327771 - HAL1 LINE L1 -1304 1203 1078 711 237 0 0 chr1 210336582 210336713 -32327640 - FLAM_A SINE Alu -2 131 1 525 340 84 69 chr1 210336713 210337414 -32326939 - HAL1 LINE L1 -1429 1078 361 739 193 135 26 chr1 210337437 210337629 -32326724 - MER20 DNA MER1_type -6 213 1 24 0 0 0 chr1 210338377 210338401 -32325952 + AT_rich Low_complexity Low_complexity 1 24 0 6038 261 44 32 chr1 210339247 210341103 -32323250 + L1MEc LINE L1 69 1957 -4258 2253 164 30 37 chr1 210341103 210341537 -32322816 - Tigger2a DNA MER2_type -3 431 1 6038 261 44 32 chr1 210341537 210342771 -32321582 + L1MEc LINE L1 1957 3175 -3040 494 258 39 13 chr1 210342976 210343131 -32321222 + MLT1J LTR MaLR 6 164 -347 490 257 29 117 chr1 210343159 210343466 -32320887 - MLT1H LTR MaLR -39 510 231 23 54 0 0 chr1 210343805 210343842 -32320511 + AT_rich Low_complexity Low_complexity 1 37 0 1687 113 43 94 chr1 210344582 210344911 -32319442 + AluSq SINE Alu 1 312 -1 2258 81 34 0 chr1 210346308 210346605 -32317748 + AluY SINE Alu 1 307 -4 21 0 0 0 chr1 210348825 210348846 -32315507 + AT_rich Low_complexity Low_complexity 1 21 0 1618 129 39 0 chr1 210350120 210350400 -32313953 - L1MA9 LINE L1 0 6312 6022 432 0 0 0 chr1 210352529 210352577 -32311776 + (TC)n Simple_repeat Simple_repeat 1 48 0 402 322 13 26 chr1 210354450 210354633 -32309720 - MLT1J LTR MaLR -289 183 18 270 327 18 35 chr1 210354838 210354951 -32309402 - L3 LINE CR1 -384 1193 1083 1724 76 50 72 chr1 210355668 210355945 -32308408 - AluY SINE Alu -6 305 35 2045 117 10 0 chr1 210356217 210356508 -32307845 + AluSq SINE Alu 1 294 -19 544 240 142 31 chr1 210356644 210356898 -32307455 - HAL1 LINE L1 -5 2502 2221 891 257 178 31 chr1 210356907 210357386 -32306967 - HAL1 LINE L1 -336 2171 1623 201 176 0 0 chr1 210357493 210357527 -32306826 + T-rich Low_complexity Low_complexity 1 34 0 550 132 11 0 chr1 210357622 210357713 -32306640 - MLT2C2 LTR ERVL -372 92 1 223 195 0 0 chr1 210357999 210358040 -32306313 + T-rich Low_complexity Low_complexity 1 41 0 1075 282 96 13 chr1 210358130 210358588 -32305765 + L2 LINE L2 2438 2933 -381 227 282 51 0 chr1 210358567 210358645 -32305708 + L2 LINE L2 3232 3313 0 * 183 114 0 0 chr1 210358872 210358907 -32305446 + (T)n Simple_repeat Simple_repeat 1 35 0 388 280 24 16 chr1 210360295 210360420 -32303933 - MIR SINE MIR -1 261 136 187 254 51 51 chr1 210360446 210360505 -32303848 - MIR SINE MIR -186 76 18 729 62 0 0 chr1 210360521 210360617 -32303736 - AluY SINE Alu 0 311 216 221 179 0 18 chr1 210361474 210361530 -32302823 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 180 427 21 0 chr1 210361749 210361845 -32302508 - L2 LINE L2 -232 3040 2943 547 317 216 13 chr1 210364466 210365032 -32299321 - L2 LINE L2 -1 3312 2642 401 401 10 10 chr1 210365037 210365244 -32299109 + MIR SINE MIR 20 226 -36 454 193 163 0 chr1 210365412 210365547 -32298806 + MER53 DNA DNA 23 179 -10 1984 108 3 27 chr1 210366194 210366490 -32297863 + AluSc SINE Alu 2 290 -19 270 56 0 0 chr1 210366724 210366760 -32297593 + (TC)n Simple_repeat Simple_repeat 2 37 0 312 0 62 0 chr1 210366763 210366811 -32297542 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 39 0 0 chr1 210367120 210367146 -32297207 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 219 36 0 0 chr1 210367145 210367173 -32297180 + (GA)n Simple_repeat Simple_repeat 1 28 0 28 61 0 0 chr1 210367504 210367553 -32296800 + AT_rich Low_complexity Low_complexity 1 49 0 226 273 23 68 chr1 210368069 210368157 -32296196 + L2 LINE L2 332 415 -2899 1886 159 3 0 chr1 210368435 210368731 -32295622 + AluJb SINE Alu 6 302 -10 2086 86 4 14 chr1 210368860 210369140 -32295213 - AluSg SINE Alu -20 290 14 2309 135 28 6 chr1 210369299 210369655 -32294698 - THE1B LTR MaLR 0 364 1 222 392 17 17 chr1 210372065 210372246 -32292107 + L2 LINE L2 2195 2375 -939 975 244 46 32 chr1 210374380 210374663 -32289690 - MLT1H LTR MaLR -251 298 12 189 411 0 14 chr1 210374756 210374829 -32289524 + MIR3 SINE MIR 5 76 -132 2304 169 45 47 chr1 210374841 210375045 -32289308 - MLT1D LTR MaLR -5 500 297 2366 84 3 0 chr1 210375045 210375342 -32289011 - AluSp SINE Alu -11 302 5 2304 169 45 47 chr1 210375342 210375622 -32288731 - MLT1D LTR MaLR -208 297 17 985 209 68 0 chr1 210375639 210375845 -32288508 + MER58A DNA MER1_type 1 220 -4 828 322 8 50 chr1 210375895 210376252 -32288101 - L3 LINE CR1 -1 1576 1235 251 336 10 29 chr1 210376943 210377047 -32287306 - L2 LINE L2 0 3272 3171 396 314 114 67 chr1 210377321 210377751 -32286602 + L2 LINE L2 2807 3256 -16 228 135 0 0 chr1 210379017 210379054 -32285299 + (CA)n Simple_repeat Simple_repeat 2 38 0 223 382 65 0 chr1 210380680 210380803 -32283550 + L3b LINE CR1 1256 1386 -197 377 276 29 9 chr1 210380909 210381014 -32283339 + MER81 DNA DNA 5 111 -3 216 358 22 45 chr1 210382206 210382340 -32282013 - L3 LINE CR1 -381 1196 1066 837 261 25 20 chr1 210382541 210382786 -32281567 - MER119 DNA MER1_type -282 301 56 3037 238 62 27 chr1 210383328 210384616 -32279737 - L1ME1 LINE L1 -5 6161 4841 1065 240 154 9 chr1 210384610 210384947 -32279406 + L1M4 LINE L1 4018 4403 -1743 * 390 175 0 0 chr1 210385293 210385373 -32278980 + (CA)n Simple_repeat Simple_repeat 2 81 0 1737 202 36 171 chr1 210386615 210387052 -32277301 - MER21B LTR ERV1 -105 790 296 1845 96 8 0 chr1 210387052 210387303 -32277050 - AluSc SINE Alu -12 297 45 1737 202 36 171 chr1 210387303 210387408 -32276945 - MER21B LTR ERV1 -599 296 509 1946 156 39 57 chr1 210387408 210387845 -32276508 - LTR3 LTR ERVK 0 429 1 1737 202 36 171 chr1 210387845 210388234 -32276119 - MER21B LTR ERV1 -385 510 70 294 152 0 0 chr1 210388342 210388388 -32275965 - MER21A LTR ERV1 -861 70 25 492 335 56 37 chr1 210388602 210388871 -32275482 + LTR33 LTR ERVL 46 319 -202 2548 185 67 19 chr1 210388893 210389429 -32274924 + MER68 LTR ERV1 1 562 0 287 211 13 13 chr1 210389481 210389557 -32274796 + LTR33 LTR ERVL 426 501 -20 21 0 0 0 chr1 210389583 210389604 -32274749 + AT_rich Low_complexity Low_complexity 1 21 0 548 254 98 87 chr1 210390907 210391296 -32273057 + L1ME LINE L1 5394 5786 -335 1811 167 18 32 chr1 210391412 210391754 -32272599 + MER1B DNA MER1_type 1 337 0 21 0 0 0 chr1 210394324 210394345 -32270008 + AT_rich Low_complexity Low_complexity 1 21 0 1576 111 10 197 chr1 210394503 210394919 -32269434 + MER44D DNA MER2_type 1 608 -1 239 320 190 25 chr1 210394963 210395163 -32269190 - L2 LINE L2 0 3313 3081 564 228 12 68 chr1 210396043 210396205 -32268148 + LTR41 LTR ERVL 525 677 -96 2046 126 0 19 chr1 210396429 210396739 -32267614 + AluJb SINE Alu 1 304 -8 573 185 0 0 chr1 210396984 210397103 -32267250 + GA-rich Low_complexity Low_complexity 1 119 0 396 145 119 2 chr1 210397399 210397487 -32266866 - MLT1F1 LTR MaLR 0 624 471 276 321 87 37 chr1 210401742 210402063 -32262290 - L1ME LINE L1 -264 5857 5521 241 307 34 11 chr1 210402100 210402188 -32262165 - MIR SINE MIR -58 204 115 2405 329 42 22 chr1 210402214 210403920 -32260433 - ERVL LTR ERVL -1633 4131 5 664 307 30 9 chr1 210403937 210404168 -32260185 - LTR16A LTR ERVL -14 436 201 646 212 56 106 chr1 210404173 210404539 -32259814 - MLT1C LTR MaLR -1 389 51 274 292 158 25 chr1 210404992 210405112 -32259241 + MIR SINE MIR 11 146 -116 21 0 0 0 chr1 210405239 210405260 -32259093 + AT_rich Low_complexity Low_complexity 1 21 0 1894 161 0 31 chr1 210405327 210405644 -32258709 - AluSx SINE Alu -5 307 1 23 33 0 0 chr1 210406085 210406115 -32258238 + AT_rich Low_complexity Low_complexity 1 30 0 231 36 0 0 chr1 210407649 210407677 -32256676 + (TTTC)n Simple_repeat Simple_repeat 3 30 0 668 362 81 14 chr1 210409238 210409672 -32254681 - L3 LINE CR1 -2 1575 1113 864 245 66 5 chr1 210410121 210410333 -32254020 + MIR SINE MIR 37 261 -1 248 235 0 0 chr1 210410953 210411004 -32253349 - L2 LINE L2 -14 3299 3249 326 340 152 11 chr1 210411251 210411718 -32252635 - L2 LINE L2 -889 2425 1893 21 36 0 0 chr1 210413312 210413340 -32251013 + AT_rich Low_complexity Low_complexity 1 28 0 275 343 64 47 chr1 210416742 210416914 -32247439 - MIR3 SINE MIR -1 207 33 227 246 66 0 chr1 210418042 210418103 -32246250 - MIR SINE MIR -62 146 82 1064 167 9 43 chr1 210419149 210419359 -32244994 - MER3 DNA MER1_type -6 203 1 5250 146 37 25 chr1 210420691 210421655 -32242698 + L1MC1 LINE L1 5350 6325 -8 1092 157 0 0 chr1 210421655 210421827 -32242526 + FAM SINE Alu 2 173 -2 535 254 61 68 chr1 210422016 210422280 -32242073 - LTR16A1 LTR ERVL -195 262 1 710 193 62 0 chr1 210423388 210423549 -32240804 + MER96B DNA MER1_type? 5 175 -242 22 70 0 0 chr1 210423717 210423760 -32240593 + AT_rich Low_complexity Low_complexity 1 43 0 180 152 0 0 chr1 210424104 210424137 -32240216 + A-rich Low_complexity Low_complexity 2 34 0 351 259 91 21 chr1 210424952 210425095 -32239258 - MIR SINE MIR -57 205 53 489 271 23 81 chr1 210426226 210426447 -32237906 + MIR SINE MIR 53 260 -2 328 259 12 0 chr1 210426451 210426536 -32237817 - L2 LINE L2 -2 3311 3226 211 261 130 26 chr1 210426676 210426791 -32237562 + MIR3 SINE MIR 79 205 -3 21 82 0 0 chr1 210426871 210426920 -32237433 + AT_rich Low_complexity Low_complexity 1 49 0 3394 162 11 70 chr1 210428941 210429674 -32234679 - LTR8 LTR ERV1 -1 690 1 4003 153 37 17 chr1 210430173 210430870 -32233483 - MER50 LTR ERV1 -23 711 1 201 232 137 53 chr1 210431289 210431384 -32232969 + L2 LINE L2 2365 2467 -847 1518 89 4 13 chr1 210432018 210432243 -32232110 + L1PB1 LINE L1 5929 6151 0 235 364 17 17 chr1 210432260 210432378 -32231975 + L2 LINE L2 3196 3313 0 419 287 23 16 chr1 210433017 210433146 -32231207 + MIR SINE MIR 14 143 -119 320 270 16 40 chr1 210434499 210434625 -32229728 + L1ME3A LINE L1 790 912 -5484 260 284 0 0 chr1 210434628 210434695 -32229658 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 21 57 0 0 chr1 210434698 210434733 -32229620 + AT_rich Low_complexity Low_complexity 1 35 0 3519 271 120 40 chr1 210435730 210437436 -32226917 + L1ME3A LINE L1 1038 2606 -3609 784 183 0 23 chr1 210437436 210437567 -32226786 - FLAM_C SINE Alu -4 129 2 3519 271 120 40 chr1 210437567 210438482 -32225871 + L1ME3A LINE L1 2606 3446 -2769 315 0 0 0 chr1 210438482 210438517 -32225836 + (TG)n Simple_repeat Simple_repeat 2 36 0 3519 271 120 40 chr1 210438517 210439476 -32224877 + L1ME3A LINE L1 3446 4867 -1348 1879 164 7 0 chr1 210439522 210439808 -32224545 + AluJo SINE Alu 2 289 -23 912 251 39 0 chr1 210439826 210440085 -32224268 + L1ME3A LINE L1 5734 6002 -229 5107 132 45 32 chr1 210440088 210440884 -32223469 - L1PA16 LINE L1 -2 6164 5340 2389 79 3 0 chr1 210440884 210441176 -32223177 + AluSc SINE Alu 1 293 -16 5107 132 45 32 chr1 210441176 210441391 -32222962 - L1PA16 LINE L1 -826 5340 5129 345 301 123 21 chr1 210441408 210441605 -32222748 + L1ME3A LINE L1 6019 6235 0 333 155 0 0 chr1 210441742 210441800 -32222553 + A-rich Low_complexity Low_complexity 1 58 0 2075 193 74 109 chr1 210442295 210442999 -32221354 - LTR8A LTR ERV1 -15 712 34 755 265 23 10 chr1 210443088 210443424 -32220929 + L1MB2 LINE L1 5611 6020 -151 446 244 15 23 chr1 210443401 210443532 -32220821 + L1ME1 LINE L1 6033 6162 -4 * 205 204 37 74 chr1 210443532 210443586 -32220767 + MER5A DNA MER1_type 138 189 0 4033 163 89 7 chr1 210444571 210445334 -32219019 - LTR1B LTR ERV1 0 826 1 3258 52 0 70 chr1 210445366 210445848 -32218505 - LTR7 LTR ERV1 -2 448 1 23345 54 3 2 chr1 210445848 210448818 -32215535 - HERVH LTR ERV1 0 7713 4743 901 182 0 7 chr1 210448820 210448974 -32215379 - HERVH LTR ERV1 -4069 3644 3492 834 150 27 0 chr1 210448964 210449111 -32215242 - HERVH LTR ERV1 -4423 3290 3140 * 19750 89 42 13 chr1 210449090 210452001 -32212352 - HERVH LTR ERV1 -4718 2995 1 3463 58 0 7 chr1 210452003 210452454 -32211899 - LTR7 LTR ERV1 -2 448 1 648 315 11 23 chr1 210454933 210455193 -32209160 + L3b LINE CR1 1116 1372 -211 21 0 0 0 chr1 210455204 210455225 -32209128 + AT_rich Low_complexity Low_complexity 1 21 0 189 250 45 0 chr1 210455438 210455482 -32208871 - MIR SINE MIR -67 141 96 215 340 61 27 chr1 210455822 210455969 -32208384 + MIR SINE MIR 66 217 -45 399 220 110 25 chr1 210457714 210457832 -32206521 - L2 LINE L2 0 3313 3186 219 69 0 0 chr1 210458610 210458639 -32205714 + (T)n Simple_repeat Simple_repeat 1 29 0 285 98 0 0 chr1 210459095 210459136 -32205217 + (CA)n Simple_repeat Simple_repeat 2 42 0 2843 73 8 0 chr1 210460199 210460568 -32203785 + MLT2A1 LTR ERVL 1 372 -72 1802 107 0 0 chr1 210460571 210460814 -32203539 + THE1A LTR MaLR 113 355 0 2285 161 29 19 chr1 210461082 210461497 -32202856 - MLT1C LTR MaLR -44 423 5 25 31 0 0 chr1 210461601 210461633 -32202720 + AT_rich Low_complexity Low_complexity 1 32 0 321 26 0 0 chr1 210462850 210462888 -32201465 + (TG)n Simple_repeat Simple_repeat 1 38 0 297 0 0 0 chr1 210462887 210462920 -32201433 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 204 290 43 0 chr1 210465383 210465452 -32198901 + MIR3 SINE MIR 118 189 -19 329 318 164 37 chr1 210466012 210466226 -32198127 + MIR SINE MIR 22 262 0 3418 157 13 3 chr1 210466533 210467377 -32196976 + L1PB1 LINE L1 4939 5791 -360 512 99 50 21 chr1 210467383 210467524 -32196829 + (TA)n Simple_repeat Simple_repeat 2 146 0 2398 120 3 3 chr1 210467525 210467891 -32196462 + L1PB1 LINE L1 5785 6150 -1 3943 179 10 3 chr1 210467891 210468664 -32195689 - L1 LINE L1 -1050 5096 4318 4432 150 5 10 chr1 210468665 210469451 -32194902 + L1MA4 LINE L1 5518 6299 -1 180 0 0 0 chr1 210471345 210471365 -32192988 + (TTA)n Simple_repeat Simple_repeat 2 21 0 235 258 91 0 chr1 210471466 210471532 -32192821 + MIR SINE MIR 171 242 -20 2052 140 0 3 chr1 210471532 210471832 -32192521 + AluSg SINE Alu 1 299 -11 319 217 14 0 chr1 210472202 210472271 -32192082 - MIR3 SINE MIR -41 167 98 246 178 0 0 chr1 210474927 210474972 -32189381 + MIR SINE MIR 105 149 -113 2106 101 3 41 chr1 210477179 210477373 -32186980 - AluSx SINE Alu -8 304 104 1767 104 14 7 chr1 210477373 210477652 -32186701 + AluSq SINE Alu 1 281 -32 210 37 0 0 chr1 210477654 210477681 -32186672 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 2106 101 3 41 chr1 210477681 210477799 -32186554 - AluSx SINE Alu -209 103 1 288 0 0 0 chr1 210477800 210477832 -32186521 + (T)n Simple_repeat Simple_repeat 1 32 0 26 0 0 0 chr1 210478413 210478439 -32185914 + AT_rich Low_complexity Low_complexity 1 26 0 246 132 15 59 chr1 210478566 210478634 -32185719 + (TTATA)n Simple_repeat Simple_repeat 3 67 0 198 304 152 0 chr1 210479399 210479511 -32184842 + L2 LINE L2 3177 3305 -8 586 288 114 17 chr1 210479813 210480049 -32184304 - MIR SINE MIR 0 262 4 229 255 0 43 chr1 210480152 210480246 -32184107 - L1MC4 LINE L1 -1339 6703 6614 219 152 0 0 chr1 210480247 210480293 -32184060 + (TG)n Simple_repeat Simple_repeat 1 46 0 267 367 56 9 chr1 210480507 210480722 -32183631 + L3b LINE CR1 1223 1447 -136 21 71 0 0 chr1 210481747 210481789 -32182564 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 210481938 210481960 -32182393 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr1 210481980 210482015 -32182338 + AT_rich Low_complexity Low_complexity 1 35 0 1558 174 7 48 chr1 210482608 210482939 -32181414 + AluJo SINE Alu 2 320 0 386 303 0 0 chr1 210483002 210483164 -32181189 + (TA)n Simple_repeat Simple_repeat 2 163 0 25 31 0 0 chr1 210483825 210483857 -32180496 + AT_rich Low_complexity Low_complexity 1 32 0 28 79 0 0 chr1 210484131 210484194 -32180159 + AT_rich Low_complexity Low_complexity 1 63 0 279 235 33 85 chr1 210484406 210484559 -32179794 + L1MC/D LINE L1 5321 5465 -894 192 97 0 0 chr1 210484883 210484914 -32179439 + (T)n Simple_repeat Simple_repeat 1 31 0 3657 118 15 0 chr1 210485037 210485586 -32178767 + L1PA14 LINE L1 5596 6152 -9 1912 128 7 24 chr1 210486792 210487108 -32177245 - AluSx SINE Alu 0 311 1 676 188 0 58 chr1 210487702 210487840 -32176513 - FLAM_A SINE Alu -3 130 1 261 0 0 0 chr1 210487845 210487874 -32176479 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 300 266 73 9 chr1 210488457 210488566 -32175787 + L1MCc LINE L1 19 134 -6289 1919 277 84 35 chr1 210489140 210491410 -32172943 + L1MCc LINE L1 1472 3965 -2976 269 261 15 0 chr1 210491448 210491513 -32172840 + GA-rich Low_complexity Low_complexity 1 66 0 449 241 38 38 chr1 210491523 210491681 -32172672 + L1MCc LINE L1 4620 4777 -2164 221 81 0 27 chr1 210491709 210491746 -32172607 + (TA)n Simple_repeat Simple_repeat 2 37 0 305 135 45 0 chr1 210491802 210491891 -32172462 + (TA)n Simple_repeat Simple_repeat 2 94 0 1232 283 92 5 chr1 210491934 210492557 -32171796 + L1MCc LINE L1 4900 5576 -1365 941 230 45 33 chr1 210492570 210492900 -32171453 + L1MCc LINE L1 5618 5951 -990 4681 42 32 0 chr1 210492908 210493580 -32170773 - L1P2 LINE L1 -679 5475 4792 3341 32 12 0 chr1 210493580 210493981 -32170372 + L1PA4 LINE L1 5745 6155 0 1166 230 54 22 chr1 210494025 210494391 -32169962 - L1ME LINE L1 -538 5626 5242 1134 242 88 12 chr1 210494721 210495051 -32169302 - L1ME3A LINE L1 -8 6162 5808 371 294 51 51 chr1 210546405 210546602 -32117751 - L3 LINE CR1 -184 1393 1197 372 309 92 20 chr1 210547154 210547306 -32117047 + MER5B DNA MER1_type 15 177 -1 2255 56 38 0 chr1 210547650 210547938 -32116415 + AluY SINE Alu 1 299 -12 319 296 23 15 chr1 210547989 210548121 -32116232 - MARNA DNA Mariner -169 417 285 210 450 0 0 chr1 210548318 210548429 -32115924 + L3 LINE CR1 1465 1575 -2 185 300 50 50 chr1 210549761 210549861 -32114492 + MIR SINE MIR 120 219 -43 257 0 30 0 chr1 210549990 210550023 -32114330 + (CA)n Simple_repeat Simple_repeat 2 35 0 296 222 0 0 chr1 210550109 210550163 -32114190 - MIR3 SINE MIR -31 177 124 241 235 24 0 chr1 210550250 210550335 -32114018 + (TA)n Simple_repeat Simple_repeat 1 87 0 349 169 65 13 chr1 210550345 210550422 -32113931 + MER106A DNA MER1_type 139 219 -17 323 218 103 11 chr1 210551006 210551093 -32113260 - MIR3 SINE MIR -1 207 113 384 22 0 0 chr1 210551653 210551698 -32112655 + (CA)n Simple_repeat Simple_repeat 2 46 0 219 139 0 0 chr1 210554839 210554875 -32109478 + (GAA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr1 210555144 210555173 -32109180 + AT_rich Low_complexity Low_complexity 1 29 0 302 273 91 16 chr1 210555194 210555315 -32109038 + MIR SINE MIR 35 164 -98 231 114 0 0 chr1 210557162 210557197 -32107156 + (TG)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr1 210557280 210557309 -32107044 + (T)n Simple_repeat Simple_repeat 1 29 0 210 37 0 0 chr1 210558515 210558542 -32105811 + (T)n Simple_repeat Simple_repeat 1 27 0 341 75 19 0 chr1 210559240 210559293 -32105060 + (TA)n Simple_repeat Simple_repeat 1 54 0 180 0 0 0 chr1 210560210 210560230 -32104123 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1663 211 56 18 chr1 210561220 210561670 -32102683 + MLT1C LTR MaLR 1 467 0 181 356 14 0 chr1 210561685 210561758 -32102595 + MIR3 SINE MIR 127 200 -8 477 314 26 26 chr1 210561817 210562008 -32102345 + MIR3 SINE MIR 18 208 0 227 273 77 88 chr1 210562027 210562221 -32102132 - L2 LINE L2 -10 3303 3112 534 207 60 0 chr1 210562958 210563074 -32101279 + L2 LINE L2 3191 3313 0 21 0 0 0 chr1 210564764 210564785 -32099568 + AT_rich Low_complexity Low_complexity 1 21 0 2161 122 7 0 chr1 210564854 210565157 -32099196 + AluSx SINE Alu 2 306 -6 279 0 0 0 chr1 210565328 210565359 -32098994 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr1 210568031 210568052 -32096301 + AT_rich Low_complexity Low_complexity 1 21 0 491 262 67 13 chr1 210570173 210570322 -32094031 + MIR3 SINE MIR 11 167 -41 195 129 0 0 chr1 210570821 210570852 -32093501 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 198 351 11 32 chr1 210571481 210571575 -32092778 + L2 LINE L2 2562 2653 -661 646 296 75 44 chr1 210571796 210572085 -32092268 - L2 LINE L2 -50 3263 2984 1830 188 11 19 chr1 210572085 210572453 -32091900 + MLT1A1 LTR MaLR 1 365 0 646 296 75 44 chr1 210572453 210572714 -32091639 - L2 LINE L2 -329 2984 2697 333 358 115 0 chr1 210572752 210572917 -32091436 - MIR SINE MIR -78 184 1 22 0 0 0 chr1 210573261 210573283 -32091070 + AT_rich Low_complexity Low_complexity 1 22 0 396 248 28 35 chr1 210574461 210574606 -32089747 + L2 LINE L2 2816 2959 -354 525 220 21 43 chr1 210574608 210574749 -32089604 + L2 LINE L2 3175 3312 -1 23 0 0 0 chr1 210574961 210574984 -32089369 + AT_rich Low_complexity Low_complexity 1 23 0 438 20 0 0 chr1 210576581 210576632 -32087721 + (TG)n Simple_repeat Simple_repeat 1 51 0 354 23 0 0 chr1 210577092 210577135 -32087218 + (GA)n Simple_repeat Simple_repeat 2 44 0 278 252 104 52 chr1 210579035 210579150 -32085203 + MIR SINE MIR 78 198 -64 252 0 0 0 chr1 210579755 210579783 -32084570 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 278 252 104 52 chr1 210581351 210581466 -32082887 + MIR SINE MIR 78 198 -64 252 0 0 0 chr1 210582131 210582159 -32082194 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1308 173 37 68 chr1 210582463 210582758 -32081595 - AluJo SINE Alu -26 286 1 803 177 123 59 chr1 210583451 210583654 -32080699 - MER20 DNA MER1_type -3 216 1 699 161 181 7 chr1 210583845 210583994 -32080359 + MER45A DNA AcHobo 4 178 0 204 299 45 15 chr1 210584132 210584199 -32080154 + MIR SINE MIR 4 72 -190 21 0 0 0 chr1 210584203 210584224 -32080129 + AT_rich Low_complexity Low_complexity 1 21 0 1733 54 5 18 chr1 210584224 210584448 -32079905 - L1PA7 LINE L1 -25 6129 5909 495 254 116 35 chr1 210584452 210584625 -32079728 + MIR SINE MIR 65 251 -11 279 71 0 0 chr1 210584630 210584672 -32079681 + (ATG)n Simple_repeat Simple_repeat 2 43 0 243 323 46 83 chr1 210586009 210586226 -32078127 + L2 LINE L2 3016 3224 -48 191 224 0 20 chr1 210588618 210588667 -32075686 + L2 LINE L2 3266 3313 0 21 0 0 0 chr1 210588887 210588908 -32075445 + AT_rich Low_complexity Low_complexity 1 21 0 419 286 27 9 chr1 210589733 210589845 -32074508 + MIR SINE MIR 26 139 -69 345 313 30 30 chr1 210589869 210590003 -32074350 - MIR SINE MIR -10 252 119 2156 123 10 0 chr1 210591567 210591875 -32072478 + AluSq SINE Alu 1 311 -2 900 194 0 13 chr1 210591884 210592039 -32072314 + FRAM SINE Alu 1 153 -13 262 366 17 46 chr1 210593918 210594093 -32070260 + L2 LINE L2 2692 2861 -453 216 377 115 0 chr1 210594147 210594277 -32070076 + L2 LINE L2 3115 3259 -13 219 36 0 0 chr1 210594815 210594843 -32069510 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 273 231 11 66 chr1 210594908 210594999 -32069354 + MIR SINE MIR 113 198 -64 24 53 0 0 chr1 210595997 210596035 -32068318 + AT_rich Low_complexity Low_complexity 1 38 0 2161 129 0 0 chr1 210596252 210596561 -32067792 - AluSq SINE Alu 0 313 5 26 0 0 0 chr1 210599090 210599116 -32065237 + AT_rich Low_complexity Low_complexity 1 26 0 282 230 54 101 chr1 210599710 210599858 -32064495 + MIR SINE MIR 33 173 -89 1033 194 50 5 chr1 210599890 210600091 -32064262 + MER20 DNA MER1_type 10 219 0 28 48 0 0 chr1 210603152 210603194 -32061159 + AT_rich Low_complexity Low_complexity 1 42 0 2179 103 13 7 chr1 210606164 210606465 -32057888 + AluSp SINE Alu 1 303 -10 407 56 19 0 chr1 210606468 210606522 -32057831 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 910 111 11 33 chr1 210606522 210606703 -32057650 + (GGAAA)n Simple_repeat Simple_repeat 4 180 0 259 239 11 34 chr1 210607234 210607322 -32057031 + MER103 DNA DNA 74 159 -7 1776 132 0 0 chr1 210608606 210608887 -32055466 + AluSq SINE Alu 44 324 0 213 269 0 39 chr1 210609044 210609122 -32055231 + (TCCA)n Simple_repeat Simple_repeat 1 75 0 24 0 0 0 chr1 210609969 210609993 -32054360 + AT_rich Low_complexity Low_complexity 1 24 0 186 426 0 0 chr1 210610675 210610776 -32053577 + MIR SINE MIR 16 116 -92 702 250 188 5 chr1 210612911 210613119 -32051234 - MIR SINE MIR -15 247 2 204 40 0 0 chr1 210614566 210614591 -32049762 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr1 210615159 210615189 -32049164 + AT_rich Low_complexity Low_complexity 1 30 0 221 290 32 0 chr1 210617525 210617587 -32046766 + L2 LINE L2 3250 3313 0 349 325 77 48 chr1 210617897 210618106 -32046247 + L3b LINE CR1 1361 1575 -8 204 238 0 0 chr1 210618702 210618765 -32045588 + (TA)n Simple_repeat Simple_repeat 1 63 0 461 262 68 104 chr1 210619075 210619296 -32045057 - Charlie8 DNA MER1_type -2157 260 48 1556 120 5 0 chr1 210619844 210620061 -32044292 - AluSg/x SINE Alu -13 297 80 1991 110 54 39 chr1 210621098 210621433 -32042920 - THE1B LTR MaLR -24 340 1 2417 68 0 0 chr1 210621662 210621957 -32042396 - AluY SINE Alu -16 295 1 22 56 0 19 chr1 210623161 210623188 -32041165 + AT_rich Low_complexity Low_complexity 1 27 -26 2105 83 0 0 chr1 210623188 210623453 -32040900 + AluY SINE Alu 29 293 -18 22 56 0 19 chr1 210623453 210623479 -32040874 + AT_rich Low_complexity Low_complexity 27 53 0 2095 98 30 10 chr1 210623983 210624278 -32040075 - AluSx SINE Alu -11 301 1 203 337 134 39 chr1 210626364 210626654 -32037699 - L2 LINE L2 -826 2488 2150 1379 124 26 39 chr1 210626654 210626887 -32037466 - MER30 DNA MER1_type 0 230 1 203 337 134 39 chr1 210626887 210626985 -32037368 - L2 LINE L2 -1164 2150 2063 2054 118 0 0 chr1 210627050 210627329 -32037024 + AluSx SINE Alu 27 305 -7 1665 248 22 32 chr1 210628371 210628783 -32035570 + MER21B LTR ERV1 1 408 -455 434 239 28 9 chr1 210628787 210628896 -32035457 + MER21B LTR ERV1 640 750 -113 1563 209 17 4 chr1 210628943 210629607 -32034746 + L1MC4 LINE L1 6767 7595 -447 221 196 0 22 chr1 210629717 210629763 -32034590 + T-rich Low_complexity Low_complexity 5 49 0 2062 105 11 3 chr1 210629906 210630192 -32034161 - AluSx SINE Alu -13 299 12 350 319 35 0 chr1 210630256 210630372 -32033981 - MIR SINE MIR -27 235 116 1368 179 39 12 chr1 210631161 210631418 -32032935 - AluJo SINE Alu -33 279 16 329 313 125 0 chr1 210631516 210631644 -32032709 + MIR SINE MIR 49 192 -70 217 281 45 45 chr1 210632030 210632119 -32032234 + MIR SINE MIR 46 134 -128 229 184 0 0 chr1 210632160 210632198 -32032155 + L2 LINE L2 3219 3256 -16 25 65 0 0 chr1 210632878 210632924 -32031429 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr1 210634306 210634329 -32030024 + AT_rich Low_complexity Low_complexity 1 23 0 219 69 0 0 chr1 210634440 210634469 -32029884 + (TAA)n Simple_repeat Simple_repeat 2 30 0 308 276 176 91 chr1 210634556 210634886 -32029467 - L2 LINE L2 -1 3271 2914 705 258 0 0 chr1 210634918 210635081 -32029272 - MER3 DNA MER1_type -46 163 1 217 365 0 0 chr1 210635422 210635496 -32028857 - MIR SINE MIR 0 262 189 28 48 0 0 chr1 210636347 210636389 -32027964 + AT_rich Low_complexity Low_complexity 1 42 0 219 280 0 0 chr1 210637202 210637252 -32027101 + GA-rich Low_complexity Low_complexity 1 50 0 1804 162 18 21 chr1 210637569 210637902 -32026451 + L1MC1 LINE L1 5977 6308 -25 876 69 46 0 chr1 210637916 210638047 -32026306 - L1PA13 LINE L1 0 6163 6027 299 333 20 0 chr1 210639318 210639417 -32024936 - MIR3 SINE MIR -30 178 78 2003 115 19 19 chr1 210641038 210641350 -32023003 + AluSx SINE Alu 1 312 0 243 243 29 0 chr1 210641482 210641552 -32022801 - LTR50 LTR ERVL -7 788 717 305 300 69 8 chr1 210641593 210641723 -32022630 - LTR50 LTR ERVL -153 642 505 338 153 139 14 chr1 210641914 210641986 -32022367 - LTR50 LTR ERVL -714 81 1 21 0 0 0 chr1 210643259 210643280 -32021073 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 210644040 210644061 -32020292 + AT_rich Low_complexity Low_complexity 1 21 0 213 340 132 9 chr1 210646626 210646732 -32017621 + L2 LINE L2 3136 3254 -18 283 203 165 38 chr1 210647964 210648043 -32016310 + MIR SINE MIR 60 148 -114 192 200 0 0 chr1 210648069 210648114 -32016239 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 468 259 189 22 chr1 210648135 210648320 -32016033 - MIR SINE MIR -16 246 31 2084 74 18 28 chr1 210648343 210648628 -32015725 + AluSq SINE Alu 28 309 -4 353 378 16 5 chr1 210649490 210649678 -32014675 - L2 LINE L2 -676 2638 2449 248 75 0 25 chr1 210649724 210649764 -32014589 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 1448 116 14 0 chr1 210653159 210653374 -32010979 - AluSp SINE Alu -95 218 1 24 0 0 0 chr1 210656656 210656680 -32007673 + AT_rich Low_complexity Low_complexity 1 24 0 904 279 12 12 chr1 210657489 210657733 -32006620 + MIR SINE MIR 3 246 -16 213 39 0 0 chr1 210659998 210660024 -32004329 + (CA)n Simple_repeat Simple_repeat 2 27 0 2033 38 4 0 chr1 210660466 210660704 -32003649 - AluY SINE Alu -7 304 66 261 358 13 7 chr1 210662045 210662196 -32002157 + L2 LINE L2 2214 2365 -949 815 282 35 31 chr1 210662966 210663225 -32001128 + MIR SINE MIR 2 261 -1 265 200 29 29 chr1 210663248 210663318 -32001035 + (TCTCTG)n Simple_repeat Simple_repeat 6 75 0 502 333 130 33 chr1 210663324 210664237 -32000116 + L2 LINE L2 1710 2711 -603 203 200 0 0 chr1 210665625 210665660 -31998693 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 807 214 0 0 chr1 210665663 210665808 -31998545 - FRAM SINE Alu -31 145 1 298 316 22 93 chr1 210666035 210666437 -31997916 + L2 LINE L2 2639 3030 -242 200 288 50 25 chr1 210666526 210666606 -31997747 + L2 LINE L2 3232 3313 0 279 0 0 0 chr1 210667827 210667858 -31996495 + (CA)n Simple_repeat Simple_repeat 2 32 0 182 195 16 55 chr1 210669019 210669147 -31995206 + (CATATA)n Simple_repeat Simple_repeat 4 126 0 21 0 0 0 chr1 210670096 210670117 -31994236 + AT_rich Low_complexity Low_complexity 1 21 0 234 133 17 33 chr1 210672346 210672406 -31991947 + CT-rich Low_complexity Low_complexity 1 59 0 732 254 102 13 chr1 210673337 210673573 -31990780 - MIR SINE MIR 0 262 6 363 336 10 0 chr1 210674949 210675053 -31989300 + MIR SINE MIR 2 106 -156 277 340 75 0 chr1 210675408 210675514 -31988839 - L2 LINE L2 -20 3293 3180 647 307 55 0 chr1 210675544 210675746 -31988607 - MIR SINE MIR 0 262 50 622 181 8 38 chr1 210675757 210675890 -31988463 - MER3 DNA MER1_type 0 209 81 184 225 25 0 chr1 210675897 210675937 -31988416 - MIR SINE MIR -219 43 3 207 323 232 10 chr1 210676052 210676151 -31988202 + L2 LINE L2 3152 3272 0 330 67 0 0 chr1 210677864 210677909 -31986444 + (GA)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr1 210678675 210678705 -31985648 + AT_rich Low_complexity Low_complexity 1 30 0 251 286 0 48 chr1 210679253 210679316 -31985037 - L3 LINE CR1 -121 1456 1397 280 353 92 0 chr1 210679499 210679717 -31984636 + MIR SINE MIR 23 260 -2 313 271 31 0 chr1 210681413 210681509 -31982844 + MIR SINE MIR 47 145 -63 1892 156 0 25 chr1 210681796 210682116 -31982237 - AluJb SINE Alu 0 312 1 252 0 0 0 chr1 210682712 210682740 -31981613 + (CAT)n Simple_repeat Simple_repeat 3 30 0 265 270 78 43 chr1 210682806 210682921 -31981432 - MIR3 SINE MIR -5 203 85 1703 195 3 0 chr1 210682971 210683273 -31981080 + AluJb SINE Alu 3 305 -7 237 271 0 0 chr1 210683375 210683423 -31980930 + polypyrimidine Low_complexity Low_complexity 3 50 0 389 352 42 56 chr1 210683744 210683957 -31980396 - MIR SINE MIR -34 228 19 280 309 18 61 chr1 210683980 210684145 -31980208 - MIR SINE MIR -16 246 89 376 253 0 0 chr1 210686567 210686646 -31977707 + L2 LINE L2 3219 3297 -16 246 231 0 0 chr1 210686868 210686933 -31977420 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 267 326 116 0 chr1 210687729 210687815 -31976538 + MIR SINE MIR 13 108 -154 210 237 0 0 chr1 210689051 210689110 -31975243 + (ATG)n Simple_repeat Simple_repeat 1 59 0 1830 154 0 51 chr1 210691210 210691521 -31972832 + AluSx SINE Alu 1 295 -17 2127 116 7 13 chr1 210691723 210692026 -31972327 + AluSq SINE Alu 1 301 -12 428 286 165 16 chr1 210694763 210695018 -31969335 + MARNA DNA Mariner 154 446 -140 449 153 10 0 chr1 210695897 210695918 -31968435 + GA-rich Low_complexity Low_complexity 3 22 -79 2002 130 3 37 chr1 210695918 210696241 -31968112 + AluSx SINE Alu 1 312 0 449 153 10 0 chr1 210696241 210696317 -31968036 + GA-rich Low_complexity Low_complexity 22 101 0 400 274 96 22 chr1 210696332 210696467 -31967886 + MIR SINE MIR 47 191 -71 635 289 11 11 chr1 210697734 210697914 -31966439 - MIR SINE MIR -81 181 2 454 333 68 20 chr1 210699263 210699512 -31964841 + MIR SINE MIR 2 262 0 878 178 99 10 chr1 210700112 210700314 -31964039 - MER58A DNA MER1_type -4 220 1 189 0 0 0 chr1 210701042 210701063 -31963290 + (CAA)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr1 210701166 210701188 -31963165 + AT_rich Low_complexity Low_complexity 1 22 0 532 215 172 52 chr1 210701581 210701814 -31962539 + MIR SINE MIR 2 262 0 28 48 0 0 chr1 210701814 210701856 -31962497 + AT_rich Low_complexity Low_complexity 1 42 0 3278 178 25 44 chr1 210702035 210702412 -31961941 + L1MB2 LINE L1 5445 5803 -368 1758 129 85 19 chr1 210702412 210702729 -31961624 + MER44D DNA MER2_type 2 609 0 3278 178 25 44 chr1 210702729 210703082 -31961271 + L1MB2 LINE L1 5803 6161 -10 2278 111 0 0 chr1 210704781 210705087 -31959266 + AluSx SINE Alu 1 306 -6 2115 109 11 3 chr1 210705194 210705502 -31958851 + AluSx SINE Alu 1 310 0 210 37 0 0 chr1 210706085 210706112 -31958241 + (CA)n Simple_repeat Simple_repeat 2 28 0 504 260 71 7 chr1 210706390 210706544 -31957809 + MER58C DNA MER1_type 11 174 -41 2185 133 0 0 chr1 210706981 210707282 -31957071 + AluSx SINE Alu 1 301 -11 1280 284 65 56 chr1 210707909 210708465 -31955888 + MER115 DNA AcHobo 132 692 -1 22 35 0 0 chr1 210709205 210709234 -31955119 + AT_rich Low_complexity Low_complexity 1 29 0 378 107 0 0 chr1 210709396 210709452 -31954901 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 1734 145 11 7 chr1 210709973 210710249 -31954104 + AluJo SINE Alu 11 287 -25 214 209 70 0 chr1 210711297 210711340 -31953013 + L2 LINE L2 3224 3269 -3 1727 162 27 14 chr1 210711993 210712290 -31952063 - AluJo SINE Alu -11 301 1 2104 131 3 0 chr1 210712584 210712882 -31951471 + AluSq SINE Alu 1 299 -14 775 247 16 0 chr1 210713119 210713305 -31951048 - MER5A DNA MER1_type 0 189 1 669 211 17 28 chr1 210713330 210713510 -31950843 + MER5B DNA MER1_type 1 178 0 1065 179 5 41 chr1 210714002 210714198 -31950155 + MER5A DNA MER1_type 1 189 0 461 114 0 14 chr1 210716564 210716634 -31947719 + MER116 DNA Mariner 5 73 -7 189 121 0 0 chr1 210718864 210718897 -31945456 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 23 0 0 0 chr1 210721339 210721362 -31942991 + AT_rich Low_complexity Low_complexity 1 23 0 202 167 0 42 chr1 210722990 210723038 -31941315 + (CATA)n Simple_repeat Simple_repeat 4 49 0 25 0 0 0 chr1 210723676 210723701 -31940652 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 210728703 210728724 -31935629 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 210730427 210730451 -31933902 + AT_rich Low_complexity Low_complexity 1 24 0 198 103 0 0 chr1 210731214 210731243 -31933110 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 324 252 47 0 chr1 210732061 210732178 -31932175 + MIR SINE MIR 21 146 -62 457 283 110 64 chr1 210733694 210733880 -31930473 + MIR SINE MIR 30 229 -33 444 226 23 38 chr1 210733880 210734013 -31930340 - MER94 DNA DNA -3 131 1 457 283 110 64 chr1 210734013 210734045 -31930308 + MIR SINE MIR 229 258 -4 29 47 0 0 chr1 210734045 210734088 -31930265 + AT_rich Low_complexity Low_complexity 1 43 0 430 314 15 0 chr1 210734628 210734765 -31929588 - MIR3 SINE MIR -16 192 54 297 128 0 0 chr1 210734984 210735031 -31929322 + (A)n Simple_repeat Simple_repeat 1 47 0 183 129 0 0 chr1 210735296 210735327 -31929026 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 462 153 0 12 chr1 210736263 210736348 -31928005 + L1MA4 LINE L1 6206 6289 -11 27 29 0 0 chr1 210736680 210736714 -31927639 + AT_rich Low_complexity Low_complexity 1 34 0 243 133 0 0 chr1 210736769 210736814 -31927539 + (A)n Simple_repeat Simple_repeat 1 45 0 314 263 33 112 chr1 210736904 210737056 -31927297 - MIR SINE MIR -74 188 49 1658 128 8 0 chr1 210737060 210737302 -31927051 - AluSx SINE Alu -15 297 54 750 168 5 105 chr1 210737337 210737528 -31926825 + FAM SINE Alu 2 173 -2 1603 119 34 0 chr1 210738389 210738624 -31925729 + AluSq SINE Alu 3 245 -68 203 276 17 17 chr1 210738797 210738855 -31925498 + L2 LINE L2 3252 3309 -4 2250 163 34 21 chr1 210738886 210739304 -31925049 + MSTB LTR MaLR 1 423 -3 2272 105 3 0 chr1 210739501 210739807 -31924546 - AluSx SINE Alu -5 307 1 1782 126 44 41 chr1 210739813 210740107 -31924246 - AluJo SINE Alu -17 295 1 2143 114 0 7 chr1 210740298 210740587 -31923766 + AluSg1 SINE Alu 1 287 -22 240 111 0 0 chr1 210740587 210740623 -31923730 + (TA)n Simple_repeat Simple_repeat 2 37 0 2534 49 0 3 chr1 210740776 210741082 -31923271 - AluY SINE Alu -6 305 1 764 250 0 0 chr1 210741308 210741468 -31922885 + MER5A DNA MER1_type 24 183 -6 331 281 56 25 chr1 210741879 210742039 -31922314 + MIR SINE MIR 47 211 -51 507 161 129 48 chr1 210742048 210742172 -31922181 + MER5B DNA MER1_type 45 178 0 345 306 116 0 chr1 210742241 210742362 -31921991 + MIR SINE MIR 19 153 -109 189 0 0 0 chr1 210742595 210742616 -31921737 + (T)n Simple_repeat Simple_repeat 1 21 0 486 272 82 20 chr1 210742666 210742813 -31921540 + MER5B DNA MER1_type 17 172 -6 723 214 6 73 chr1 210743436 210743614 -31920739 - FRAM SINE Alu 0 166 1 745 163 194 12 chr1 210744128 210744288 -31920065 + MER5A DNA MER1_type 1 189 0 239 79 26 0 chr1 210745230 210745268 -31919085 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 317 86 99 7 chr1 210745779 210745930 -31918423 + (TTATA)n Simple_repeat Simple_repeat 1 165 0 364 354 57 31 chr1 210746114 210746306 -31918047 + L2 LINE L2 3076 3272 0 375 314 50 25 chr1 210747025 210747146 -31917207 + L2 LINE L2 3184 3307 -6 231 255 0 0 chr1 210747188 210747239 -31917114 + L2 LINE L2 3261 3311 -2 304 310 0 18 chr1 210748227 210748340 -31916013 + (CAT)n Simple_repeat Simple_repeat 3 113 0 328 317 178 5 chr1 210748359 210748561 -31915792 - MIR SINE MIR -24 238 2 276 77 0 0 chr1 210749072 210749111 -31915242 + (CA)n Simple_repeat Simple_repeat 1 39 0 233 29 29 0 chr1 210749741 210749775 -31914578 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 816 184 0 7 chr1 210749782 210749918 -31914435 - FRAM SINE Alu -36 140 6 272 143 0 0 chr1 210750035 210750077 -31914276 - AluSp SINE Alu -122 181 140 405 253 10 0 chr1 210750259 210750358 -31913995 + MIR SINE MIR 41 140 -122 279 337 11 0 chr1 210750567 210750659 -31913694 - MIR SINE MIR -10 252 160 365 316 0 65 chr1 210750716 210750871 -31913482 - MIR SINE MIR -98 164 20 24 0 0 0 chr1 210751002 210751026 -31913327 + AT_rich Low_complexity Low_complexity 1 24 0 236 371 0 9 chr1 210751733 210751838 -31912515 - MIR SINE MIR -94 168 65 247 404 40 0 chr1 210752243 210752394 -31911959 + MIR3 SINE MIR 49 205 -3 273 98 0 0 chr1 210754657 210754698 -31909655 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 263 235 0 0 chr1 210756724 210756775 -31907578 - MIR SINE MIR -111 151 101 716 253 84 0 chr1 210757310 210757512 -31906841 + MIR SINE MIR 1 219 -43 189 0 0 0 chr1 210757767 210757788 -31906565 + (CA)n Simple_repeat Simple_repeat 2 22 0 224 270 50 40 chr1 210760680 210760780 -31903573 + MIR SINE MIR 111 211 -51 461 314 72 22 chr1 210763448 210763671 -31900682 - MIR SINE MIR -26 236 3 194 241 35 69 chr1 210764236 210764294 -31900059 - L2 LINE L2 -15 3257 3202 753 287 81 40 chr1 210764450 210764798 -31899555 + L2 LINE L2 2911 3272 0 230 264 22 0 chr1 210764905 210764996 -31899357 + (TA)n Simple_repeat Simple_repeat 2 94 0 953 189 0 0 chr1 210765047 210765200 -31899153 + FRAM SINE Alu 1 152 -24 387 292 19 50 chr1 210766579 210766740 -31897613 - MIR SINE MIR -34 228 73 4807 22 0 0 chr1 210766752 210767306 -31897047 + L1PA3 LINE L1 5598 6151 -4 21 36 0 0 chr1 210767781 210767809 -31896544 + AT_rich Low_complexity Low_complexity 1 28 0 336 309 128 25 chr1 210768301 210768505 -31895848 + MIR SINE MIR 21 245 -17 295 333 43 49 chr1 210768595 210768757 -31895596 + MER5A DNA MER1_type 1 161 -28 389 171 0 178 chr1 210768818 210768854 -31895499 - FLAM_A SINE Alu -195 107 66 2180 113 3 0 chr1 210768854 210769146 -31895207 - AluSx SINE Alu -19 293 1 389 171 0 178 chr1 210769146 210769238 -31895115 - FLAM_A SINE Alu -236 66 2 431 331 61 34 chr1 210769298 210769709 -31894644 - LTR33 LTR ERVL 0 521 100 549 302 28 17 chr1 210769896 210770075 -31894278 - MIR SINE MIR -13 249 69 181 191 16 79 chr1 210771367 210771430 -31892923 - L3 LINE CR1 -239 1338 1280 435 248 57 23 chr1 210771563 210771712 -31892641 - MIR3 SINE MIR 0 208 53 272 316 139 33 chr1 210772602 210772817 -31891536 - MIR SINE MIR -24 238 1 503 0 0 31 chr1 210773015 210773079 -31891274 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1732 184 0 3 chr1 210773080 210773368 -31890985 - AluJo SINE Alu -25 287 1 262 294 62 55 chr1 210773369 210773515 -31890838 - MIR SINE MIR -93 169 23 211 280 0 0 chr1 210775408 210775458 -31888895 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 318 153 0 0 chr1 210775458 210775517 -31888836 + (TTCA)n Simple_repeat Simple_repeat 4 62 0 645 162 0 0 chr1 210775584 210775689 -31888664 - FLAM_A SINE Alu -10 132 28 238 333 9 38 chr1 210776632 210776737 -31887616 - MER102a DNA MER1_type -6 324 223 210 37 0 0 chr1 210777269 210777296 -31887057 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr1 210778502 210778529 -31885824 + AT_rich Low_complexity Low_complexity 1 27 0 231 256 240 33 chr1 210778581 210778702 -31885651 - MIR SINE MIR -72 190 45 1816 161 0 47 chr1 210779369 210779686 -31884667 - AluJo SINE Alu -10 302 1 408 352 116 40 chr1 210779902 210780139 -31884214 + L2 LINE L2 2243 2461 -853 1602 155 73 43 chr1 210780139 210780442 -31883911 - AluJb SINE Alu 0 312 1 408 352 116 40 chr1 210780442 210780783 -31883570 + L2 LINE L2 2461 2865 -449 271 272 97 90 chr1 210780852 210781142 -31883211 + L2 LINE L2 2933 3224 -48 192 354 108 31 chr1 210782109 210782239 -31882114 + MIR SINE MIR 8 147 -115 715 289 242 22 chr1 210782690 210783054 -31881299 - LTR16A LTR ERVL -6 444 1 597 162 17 0 chr1 210783678 210784026 -31880327 + (TA)n Simple_repeat Simple_repeat 1 354 0 233 353 57 0 chr1 210784285 210784407 -31879946 + MIR SINE MIR 86 214 -48 315 264 82 0 chr1 210785161 210785271 -31879082 - MIR SINE MIR -70 138 20 414 229 0 73 chr1 210785654 210785763 -31878590 - L2 LINE L2 -5 3308 3208 25 51 0 0 chr1 210787900 210787939 -31876414 + AT_rich Low_complexity Low_complexity 1 39 0 267 255 10 59 chr1 210790862 210790964 -31873389 - L2 LINE L2 -15 3298 3202 14589 131 25 18 chr1 210791376 210791781 -31872572 + Tigger1 DNA MER2_type 1 402 -2016 2240 109 10 0 chr1 210791781 210792083 -31872270 + AluSg SINE Alu 1 305 -5 14589 131 25 18 chr1 210792083 210794080 -31870273 + Tigger1 DNA MER2_type 402 2418 0 215 316 35 0 chr1 210794098 210794155 -31870198 - MIR3 SINE MIR -52 156 98 709 277 87 39 chr1 210794312 210794724 -31869629 + MLT1J1 LTR MaLR 3 434 -12 259 326 41 0 chr1 210794733 210794831 -31869522 + MIR SINE MIR 53 154 -108 198 333 49 29 chr1 210795083 210795185 -31869168 - L2 LINE L2 -407 2907 2804 343 285 241 4 chr1 210795276 210795504 -31868849 + MLT1L LTR MaLR 324 605 -10 2177 153 72 15 chr1 210795564 210795969 -31868384 + MSTA LTR MaLR 1 428 0 196 374 0 0 chr1 210796250 210796333 -31868020 - MIR3 SINE MIR -13 195 113 2240 209 70 34 chr1 210797677 210798180 -31866173 + MLT1F LTR MaLR 1 521 -21 240 295 139 16 chr1 210798213 210798342 -31866011 + L2 LINE L2 3167 3311 -2 23 0 0 0 chr1 210798417 210798440 -31865913 + AT_rich Low_complexity Low_complexity 1 23 0 28 88 0 10 chr1 210799716 210799790 -31864563 + AT_rich Low_complexity Low_complexity 1 75 -26 2239 120 10 0 chr1 210799790 210800099 -31864254 - AluSx SINE Alu 0 312 1 28 88 0 10 chr1 210800099 210800126 -31864227 + AT_rich Low_complexity Low_complexity 75 101 0 384 284 88 75 chr1 210800653 210800984 -31863369 + HAL1 LINE L1 499 833 -1674 189 288 0 50 chr1 210801034 210801114 -31863239 + L2 LINE L2 1686 1761 -1553 203 0 0 36 chr1 210801331 210801359 -31862994 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2127 116 0 0 chr1 210801363 210801648 -31862705 - AluSg SINE Alu -25 285 1 923 194 15 29 chr1 210801649 210801855 -31862498 - L1MC3 LINE L1 -99 7686 7484 202 357 0 0 chr1 210802000 210802070 -31862283 + GA-rich Low_complexity Low_complexity 3 72 0 204 40 0 0 chr1 210804069 210804094 -31860259 + (T)n Simple_repeat Simple_repeat 1 25 0 751 254 109 0 chr1 210804635 210804836 -31859517 - MIR SINE MIR -12 250 28 1545 57 0 0 chr1 210805743 210805937 -31858416 - L1PA5 LINE L1 -3 6151 5958 197 279 98 0 chr1 210806978 210807039 -31857314 - L3 LINE CR1 -3 1574 1508 288 0 0 0 chr1 210807156 210807188 -31857165 + (TG)n Simple_repeat Simple_repeat 2 33 0 1816 222 118 34 chr1 210810907 210811235 -31853118 + L1ME2 LINE L1 5449 5748 -416 236 77 26 0 chr1 210811235 210811274 -31853079 + (TG)n Simple_repeat Simple_repeat 1 40 0 1816 222 118 34 chr1 210811274 210811558 -31852795 + L1ME2 LINE L1 5748 6112 -52 183 361 139 0 chr1 210811729 210811851 -31852502 - MIR3 SINE MIR -60 148 10 23 0 0 0 chr1 210812397 210812420 -31851933 + AT_rich Low_complexity Low_complexity 1 23 0 6367 138 70 12 chr1 210812787 210813289 -31851064 + Tigger3b DNA MER2_type 4 476 -2552 339 25 0 0 chr1 210813289 210813329 -31851024 + (TG)n Simple_repeat Simple_repeat 2 41 0 6367 138 70 12 chr1 210813329 210813987 -31850366 + Tigger3b DNA MER2_type 476 1231 0 232 289 16 70 chr1 210814032 210814160 -31850193 + L2 LINE L2 2934 3054 -218 693 198 0 0 chr1 210814295 210814411 -31849942 - FLAM_C SINE Alu -25 118 3 2116 153 12 0 chr1 210814433 210814773 -31849580 + MER2 DNA MER2_type 1 344 0 1870 148 13 13 chr1 210815506 210815840 -31848513 - AluJb SINE Alu 0 312 1 30 27 0 0 chr1 210816175 210816212 -31848141 + AT_rich Low_complexity Low_complexity 1 37 0 1166 173 94 18 chr1 210816217 210816494 -31847859 + L1MD2 LINE L1 6057 6354 -5 188 411 33 0 chr1 210816503 210816593 -31847760 + L2 LINE L2 3163 3255 -17 473 250 29 0 chr1 210816858 210816962 -31847391 - Tigger3(Golem) DNA MER2_type 0 3029 2923 274 204 111 0 chr1 210817145 210817199 -31847154 - MIR SINE MIR -79 183 124 236 121 152 76 chr1 210817772 210817838 -31846515 + MIR SINE MIR 97 167 -95 2262 112 0 0 chr1 210817952 210818247 -31846106 - AluSx SINE Alu -17 295 1 2506 52 0 7 chr1 210819303 210819609 -31844744 + AluY SINE Alu 1 304 -7 180 77 0 0 chr1 210821549 210821575 -31842778 + (CA)n Simple_repeat Simple_repeat 2 27 0 207 143 29 0 chr1 210822215 210822250 -31842103 - L2 LINE L2 -15 3298 3263 2178 95 3 48 chr1 210823548 210823863 -31840490 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr1 210824033 210824060 -31840293 + AT_rich Low_complexity Low_complexity 1 27 0 1258 115 36 0 chr1 210824271 210824463 -31839890 + MER30 DNA MER1_type 1 199 -31 402 94 0 0 chr1 210824727 210824791 -31839562 + (TG)n Simple_repeat Simple_repeat 1 64 0 2204 115 0 25 chr1 210825299 210825620 -31838733 + AluSq SINE Alu 1 313 0 22 35 0 0 chr1 210825834 210825863 -31838490 + AT_rich Low_complexity Low_complexity 1 29 0 2961 60 0 0 chr1 210829623 210829993 -31834360 + L1P3 LINE L1 5402 5771 -383 1312 178 68 14 chr1 210830140 210830433 -31833920 - L1MC3 LINE L1 -310 7475 7167 242 295 0 0 chr1 210830433 210830494 -31833859 - MLT1F1 LTR MaLR -472 95 35 221 136 0 23 chr1 210830686 210830730 -31833623 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 288 315 131 34 chr1 210830735 210831031 -31833322 - L2 LINE L2 -10 3303 2856 404 324 60 6 chr1 210831110 210831292 -31833061 - L2 LINE L2 -580 2734 2543 617 235 37 12 chr1 210831309 210831471 -31832882 + MIR SINE MIR 82 247 -15 265 293 27 0 chr1 210833174 210833249 -31831104 - Charlie4 DNA MER1_type 0 1961 1885 931 191 76 9 chr1 210833559 210833784 -31830569 - L1MA9 LINE L1 -38 6274 6035 561 215 0 0 chr1 210833809 210833916 -31830437 - FLAM_A SINE Alu -20 122 16 393 189 0 119 chr1 210833932 210834091 -31830262 - L1MA9 LINE L1 -271 6041 5902 1550 159 24 14 chr1 210834093 210834382 -31829971 - L1MA9 LINE L1 -745 5567 5276 184 278 289 0 chr1 210834590 210834687 -31829666 - L2 LINE L2 0 3272 3148 1118 155 0 0 chr1 210835056 210835224 -31829129 - MER45A DNA AcHobo 0 178 11 389 282 148 0 chr1 210835304 210835446 -31828907 - MIR SINE MIR 0 262 100 24 0 0 0 chr1 210836723 210836747 -31827606 + AT_rich Low_complexity Low_complexity 1 24 0 248 337 58 0 chr1 210840588 210840674 -31823679 - L3 LINE CR1 -7 1570 1480 1644 186 32 0 chr1 210841008 210841287 -31823066 - AluJb SINE Alu -24 288 1 227 218 0 55 chr1 210841500 210841555 -31822798 + polypurine Low_complexity Low_complexity 1 52 0 230 312 65 0 chr1 210841613 210841690 -31822663 - MIR SINE MIR -33 229 148 198 0 0 0 chr1 210841889 210841911 -31822442 + (A)n Simple_repeat Simple_repeat 1 22 0 221 22 87 0 chr1 210843123 210843169 -31821184 + (TA)n Simple_repeat Simple_repeat 2 51 0 220 229 21 0 chr1 210843261 210843309 -31821044 + (TATG)n Simple_repeat Simple_repeat 3 51 0 311 301 20 34 chr1 210843318 210843464 -31820889 - L1MC4 LINE L1 -1323 6719 6576 313 305 106 49 chr1 210846104 210846330 -31818023 + MIR SINE MIR 14 252 -10 574 271 60 25 chr1 210847779 210847978 -31816375 - MIR SINE MIR -8 254 49 832 92 23 0 chr1 210848870 210849001 -31815352 + L1MA8 LINE L1 6157 6290 -1 4571 89 50 9 chr1 210851162 210851826 -31812527 - L1PA11 LINE L1 0 6174 5484 1689 181 3 0 chr1 210853967 210854249 -31810104 + AluJo SINE Alu 1 283 -29 423 0 0 0 chr1 210854253 210854300 -31810053 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 24 67 0 0 chr1 210854300 210854345 -31810008 + AT_rich Low_complexity Low_complexity 1 45 0 254 376 34 8 chr1 210855718 210855835 -31808518 + MIR3 SINE MIR 88 207 -1 26 39 0 20 chr1 210856709 210856720 -31807633 + AT_rich Low_complexity Low_complexity 1 11 -39 2102 126 3 0 chr1 210856720 210857013 -31807340 + AluSx SINE Alu 1 294 -18 26 39 0 20 chr1 210857013 210857052 -31807301 + AT_rich Low_complexity Low_complexity 11 50 0 217 264 42 42 chr1 210859155 210859227 -31805126 - MIR SINE MIR -73 189 118 291 237 74 37 chr1 210859622 210859757 -31804596 + L1ME4a LINE L1 5961 6100 -21 280 274 147 0 chr1 210859989 210860084 -31804269 + MIR SINE MIR 57 165 -97 528 268 58 32 chr1 210861906 210862096 -31802257 - MIR SINE MIR -36 226 32 2297 99 3 0 chr1 210862104 210862407 -31801946 - AluSx SINE Alu -8 304 1 189 204 151 86 chr1 210863901 210864053 -31800300 - MIR SINE MIR -88 174 13 208 295 35 73 chr1 210864213 210864364 -31799989 - MIR3 SINE MIR -109 153 14 309 100 0 0 chr1 210864855 210864905 -31799448 + (CA)n Simple_repeat Simple_repeat 1 50 0 237 62 62 0 chr1 210866384 210866432 -31797921 + (TA)n Simple_repeat Simple_repeat 1 51 0 23 0 0 0 chr1 210866510 210866533 -31797820 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 210866546 210866573 -31797780 + AT_rich Low_complexity Low_complexity 1 27 0 187 297 62 16 chr1 210867527 210867591 -31796762 - L2 LINE L2 0 3272 3206 377 290 39 39 chr1 210867719 210867874 -31796479 - MIR SINE MIR -12 250 96 456 274 54 86 chr1 210867947 210868388 -31795965 + MLT1H LTR MaLR 108 534 -15 189 0 0 0 chr1 210868388 210868409 -31795944 + (A)n Simple_repeat Simple_repeat 1 21 0 252 0 0 0 chr1 210869640 210869668 -31794685 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 873 220 154 0 chr1 210870538 210870765 -31793588 + MER21B LTR ERV1 49 310 -553 488 283 42 37 chr1 210870835 210871026 -31793327 + L2 LINE L2 3117 3308 -5 201 176 0 0 chr1 210871067 210871101 -31793252 + MIR SINE MIR 214 247 -15 21 57 0 0 chr1 210871389 210871424 -31792929 + AT_rich Low_complexity Low_complexity 1 35 0 2220 102 0 0 chr1 210874311 210874596 -31789757 + AluSg SINE Alu 1 285 -25 2107 117 3 0 chr1 210874823 210875113 -31789240 + AluSx SINE Alu 1 291 -21 241 287 30 20 chr1 210875266 210875367 -31788986 - MER5A DNA MER1_type 0 189 88 25 51 0 0 chr1 210875700 210875739 -31788614 + AT_rich Low_complexity Low_complexity 1 39 0 312 358 162 13 chr1 210877002 210877385 -31786968 + L3b LINE CR1 1123 1562 -21 1934 168 70 14 chr1 210877848 210878277 -31786076 + L1MB3 LINE L1 5731 6183 0 306 50 0 0 chr1 210878403 210878443 -31785910 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 202 273 0 0 chr1 210878444 210878499 -31785854 - L2 LINE L2 -2 3311 3257 262 327 119 28 chr1 210878646 210878946 -31785407 - L2 LINE L2 -211 3061 2743 414 342 43 82 chr1 210879761 210880065 -31784288 - L2 LINE L2 -47 3225 2934 2128 122 0 0 chr1 210881121 210881400 -31782953 + AluSg SINE Alu 1 279 -31 353 307 77 26 chr1 210881468 210881706 -31782647 + L1ME LINE L1 5255 5512 -652 198 71 0 0 chr1 210881730 210881758 -31782595 + (TG)n Simple_repeat Simple_repeat 2 29 0 482 135 0 115 chr1 210881761 210881865 -31782488 - FRAM SINE Alu -30 146 55 4345 141 17 11 chr1 210881965 210882746 -31781607 + L1MA5 LINE L1 5515 6299 -1 232 222 56 65 chr1 210882778 210882886 -31781467 - HsTC2 DNA Tc2 -1699 199 93 226 146 18 18 chr1 210885734 210885789 -31778564 + (TA)n Simple_repeat Simple_repeat 1 55 0 315 0 0 0 chr1 210885890 210885925 -31778428 + (CA)n Simple_repeat Simple_repeat 2 36 0 219 327 112 0 chr1 210887385 210887492 -31776861 - L2 LINE L2 -5 3267 3149 2146 118 7 0 chr1 210887530 210887827 -31776526 + AluSx SINE Alu 1 299 -13 1179 126 0 0 chr1 210889135 210889302 -31775051 - AluSg/x SINE Alu -1 311 145 410 127 0 0 chr1 210889303 210889366 -31774987 - AluS SINE Alu -255 63 1 640 265 98 46 chr1 210889470 210889859 -31774494 - MLT1J2 LTR MaLR -4 446 38 371 108 108 65 chr1 210889974 210890067 -31774286 + MER63 DNA MER1_type 1 723 -339 1821 126 77 0 chr1 210890644 210890929 -31773424 + AluSx SINE Alu 1 307 -5 290 339 27 0 chr1 210892957 210893069 -31771284 + MIR3 SINE MIR 87 201 -7 229 307 10 15 chr1 210893166 210893284 -31771069 + T-rich Low_complexity Low_complexity 5 198 0 260 311 47 47 chr1 210894461 210894567 -31769786 + MER91C DNA MER1_type 34 139 -1 5297 147 8 0 chr1 210894699 210895741 -31768612 + L1PA16 LINE L1 5120 6172 0 412 182 0 0 chr1 210897268 210897345 -31767008 - MER116 DNA Mariner 0 80 4 183 156 0 0 chr1 210901119 210901151 -31763202 + CT-rich Low_complexity Low_complexity 1 32 0 234 62 0 0 chr1 210901329 210901361 -31762992 + (TG)n Simple_repeat Simple_repeat 2 33 0 2906 207 81 54 chr1 210901694 210901939 -31762414 + MER21B LTR ERV1 40 277 -586 2239 116 0 0 chr1 210901939 210902233 -31762120 + AluSg SINE Alu 1 294 -16 2906 207 81 54 chr1 210902233 210902788 -31761565 + MER21B LTR ERV1 277 862 -1 200 259 0 69 chr1 210902881 210902939 -31761414 - L2 LINE L2 -5 3267 3214 1927 117 40 75 chr1 210903072 210903405 -31760948 + THE1B LTR MaLR 2 322 -42 2090 138 0 0 chr1 210903405 210903702 -31760651 - AluSx SINE Alu -15 297 1 1927 117 40 75 chr1 210903702 210903744 -31760609 + THE1B LTR MaLR 322 364 0 1098 221 103 33 chr1 210904051 210904449 -31759904 - MER63B DNA MER1_type 0 436 11 554 301 132 0 chr1 210904669 210904882 -31759471 - MIR SINE MIR -3 259 19 195 167 0 56 chr1 210905448 210905484 -31758869 - MIR SINE MIR -134 74 41 340 285 28 56 chr1 210905922 210906066 -31758287 - MIR SINE MIR -50 212 73 1660 133 39 86 chr1 210906243 210906534 -31757819 + MER2 DNA MER2_type 1 273 -71 2029 136 40 7 chr1 210906534 210906835 -31757518 - AluSx SINE Alu -1 311 1 1660 133 39 86 chr1 210906835 210906904 -31757449 + MER2 DNA MER2_type 273 344 0 23 0 0 0 chr1 210907164 210907187 -31757166 + AT_rich Low_complexity Low_complexity 1 23 0 452 131 0 12 chr1 210907303 210907387 -31756966 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 * 573 88 0 0 chr1 210907371 210907451 -31756902 + (TCTCC)n Simple_repeat Simple_repeat 5 84 0 1653 143 9 97 chr1 210907455 210907797 -31756556 - AluJb SINE Alu 0 312 1 3601 147 56 0 chr1 210907807 210908448 -31755905 - L1MC1 LINE L1 0 6333 5657 345 109 0 0 chr1 210909318 210909373 -31754980 + (TG)n Simple_repeat Simple_repeat 2 56 0 205 305 119 49 chr1 210909413 210909639 -31754714 - MIR SINE MIR -1 261 20 969 115 0 0 chr1 210909900 210910030 -31754323 + AluSq/x SINE Alu 1 130 -182 261 83 0 0 chr1 210910069 210910105 -31754248 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1971 157 0 22 chr1 210913536 210913849 -31750504 + AluSx SINE Alu 2 307 -5 877 302 70 27 chr1 210913886 210914422 -31749931 - L2 LINE L2 -5 3308 2742 324 260 0 77 chr1 210915495 210915599 -31748754 - MIR SINE MIR -74 188 93 360 182 0 0 chr1 210916127 210916215 -31748138 + (CA)n Simple_repeat Simple_repeat 2 89 0 2203 94 40 0 chr1 210917078 210917377 -31746976 - AluSq SINE Alu -2 311 1 1434 181 25 35 chr1 210917541 210917823 -31746530 + AluJo SINE Alu 21 299 -13 1876 164 3 13 chr1 210917918 210918217 -31746136 + AluJb SINE Alu 6 301 -11 2317 95 0 0 chr1 210920952 210921248 -31743105 - AluSx SINE Alu -16 296 1 354 290 187 7 chr1 210922125 210922280 -31742073 + MER5A DNA MER1_type 7 189 0 183 245 0 88 chr1 210925499 210925601 -31738752 + L2 LINE L2 3146 3238 -75 201 250 0 19 chr1 210925602 210925654 -31738699 - L2 LINE L2 -8 3305 3255 265 354 35 0 chr1 210925886 210925999 -31738354 + L2 LINE L2 3151 3267 -5 283 385 68 18 chr1 210926010 210926231 -31738122 - L2 LINE L2 -340 2974 2743 2098 126 0 23 chr1 210927092 210927401 -31736952 + AluSg SINE Alu 1 302 -8 280 344 0 0 chr1 210927695 210927785 -31736568 + (TATATG)n Simple_repeat Simple_repeat 6 95 0 1861 184 3 0 chr1 210928909 210929213 -31735140 - AluJb SINE Alu -7 305 1 186 295 139 8 chr1 210931999 210932121 -31732232 + MIR SINE MIR 38 175 -87 1531 197 23 3 chr1 210932159 210932285 -31732068 + AluJo SINE Alu 1 123 -189 189 0 0 0 chr1 210932285 210932306 -31732047 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1531 197 23 3 chr1 210932306 210932483 -31731870 + AluJo SINE Alu 123 310 -2 23 33 0 0 chr1 210933991 210934021 -31730332 + AT_rich Low_complexity Low_complexity 1 30 0 311 196 0 0 chr1 210934775 210934831 -31729522 + L2 LINE L2 3209 3264 -8 23 33 0 0 chr1 210935233 210935263 -31729090 + AT_rich Low_complexity Low_complexity 1 30 0 2247 82 6 25 chr1 210935783 210936101 -31728252 - AluSq SINE Alu -1 312 1 456 269 12 44 chr1 210936985 210937145 -31727208 + MIR SINE MIR 59 213 -49 195 343 30 0 chr1 210938718 210938785 -31725568 + MIR3 SINE MIR 97 165 -43 1520 195 11 3 chr1 210938873 210939160 -31725193 - AluSx SINE Alu 0 312 24 28 0 0 0 chr1 210939280 210939308 -31725045 + AT_rich Low_complexity Low_complexity 1 28 0 203 328 60 0 chr1 210939624 210939691 -31724662 + MIR3 SINE MIR 97 167 -41 2249 113 10 0 chr1 210939779 210940088 -31724265 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 210940114 210940142 -31724211 + AT_rich Low_complexity Low_complexity 1 28 0 258 105 0 0 chr1 210940593 210940631 -31723722 + (T)n Simple_repeat Simple_repeat 1 38 0 184 316 40 26 chr1 210941141 210941217 -31723136 - L2 LINE L2 -5 3308 3232 300 282 97 29 chr1 210941433 210942076 -31722277 + L1ME3A LINE L1 4867 5565 -597 353 333 106 16 chr1 210942078 210942390 -31721963 + L1ME3A LINE L1 5605 5944 -226 1920 110 4 11 chr1 210942431 210942732 -31721621 + AluSg SINE Alu 20 318 0 306 0 0 0 chr1 210943095 210943129 -31721224 + (CA)n Simple_repeat Simple_repeat 1 34 0 188 351 0 0 chr1 210943136 210943193 -31721160 - MER5B DNA MER1_type -1 177 121 1636 233 55 81 chr1 210944213 210944882 -31719471 + L1ME3A LINE L1 5517 6168 -2 2055 173 33 30 chr1 210944926 210945475 -31718878 - MLT2A2 LTR ERVL -8 546 1 345 137 29 29 chr1 210946032 210946134 -31718219 + CT-rich Low_complexity Low_complexity 1 102 0 620 26 13 0 chr1 210946248 210946326 -31718027 + (TTCCC)n Simple_repeat Simple_repeat 5 83 0 2333 94 7 7 chr1 210946683 210946992 -31717361 + AluSq SINE Alu 1 309 -4 3696 238 56 20 chr1 210947270 210948499 -31715854 + L1ME1 LINE L1 1002 2274 -4266 * 5331 248 56 33 chr1 210948494 210951811 -31712542 + L1ME1 LINE L1 2791 6237 -323 2125 115 6 19 chr1 210951811 210952124 -31712229 + AluSq SINE Alu 2 310 -3 5331 248 56 33 chr1 210952124 210952431 -31711922 + L1ME1 LINE L1 6237 6535 -25 229 231 51 51 chr1 210952968 210953046 -31711307 + MIR SINE MIR 65 142 -120 997 208 5 0 chr1 210953452 210953644 -31710709 + AluJb SINE Alu 120 312 0 240 35 0 0 chr1 210954275 210954304 -31710049 + (T)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr1 210954925 210954947 -31709406 + AT_rich Low_complexity Low_complexity 1 22 0 1005 222 0 0 chr1 210956233 210956422 -31707931 + MER5A DNA MER1_type 1 189 0 2686 232 61 34 chr1 210956571 210957020 -31707333 - L1ME1 LINE L1 -10 6225 5790 1818 108 0 0 chr1 210957020 210957260 -31707093 + AluSg SINE Alu 55 294 -16 2686 232 61 34 chr1 210957260 210957889 -31706464 - L1ME1 LINE L1 -445 5790 5117 2521 238 59 45 chr1 210957894 210957976 -31706377 - L1ME1 LINE L1 -4049 2347 2268 1235 140 45 5 chr1 210957976 210958197 -31706156 - L1MA5 LINE L1 -3 6297 6068 2521 238 59 45 chr1 210958197 210959111 -31705242 - L1ME1 LINE L1 -4128 2268 1337 318 267 23 0 chr1 210959135 210959221 -31705132 - L1ME1 LINE L1 -5436 960 873 1862 154 4 4 chr1 210959228 210959508 -31704845 - AluSx SINE Alu -32 280 1 3060 262 31 10 chr1 210959509 210960374 -31703979 - L1ME1 LINE L1 -5476 920 38 266 264 296 6 chr1 210960467 210960626 -31703727 - MIR SINE MIR -42 220 16 185 243 0 0 chr1 210960701 210960738 -31703615 - L2 LINE L2 -17 3255 3219 * 433 288 131 6 chr1 210960733 210960893 -31703460 + MIR SINE MIR 48 227 -35 2355 89 7 0 chr1 210961031 210961335 -31703018 - AluY SINE Alu -5 306 1 438 327 20 30 chr1 210961352 210961554 -31702799 - MIR SINE MIR -26 236 37 22 0 0 0 chr1 210961751 210961773 -31702580 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr1 210963100 210963130 -31701223 + (TG)n Simple_repeat Simple_repeat 2 31 0 430 277 45 19 chr1 210963978 210964133 -31700220 + MIR SINE MIR 86 244 -18 1796 157 27 38 chr1 210966377 210966746 -31697607 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr1 210968618 210968640 -31695713 + AT_rich Low_complexity Low_complexity 1 22 0 907 128 158 6 chr1 210969978 210970142 -31694211 + MER20B DNA MER1_type 31 219 0 23 0 0 0 chr1 210971203 210971226 -31693127 + AT_rich Low_complexity Low_complexity 1 23 0 300 278 99 37 chr1 210971440 210971521 -31692832 + L1ME LINE L1 5599 5673 -448 1013 210 73 0 chr1 210971521 210971726 -31692627 + MER58A DNA MER1_type 4 223 -1 300 278 99 37 chr1 210971726 210971835 -31692518 + L1ME LINE L1 5673 5801 -320 600 273 48 95 chr1 210972818 210973155 -31691198 - L2 LINE L2 -7 3306 2986 185 339 68 0 chr1 210973194 210973253 -31691100 - L2 LINE L2 -38 3234 3172 188 67 33 0 chr1 210973319 210973349 -31691004 + (CA)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr1 210974908 210974937 -31689416 + AT_rich Low_complexity Low_complexity 1 29 0 14175 123 26 47 chr1 210977029 210979497 -31684856 + Tigger1 DNA MER2_type 1 2418 0 2251 92 0 7 chr1 210980727 210981021 -31683332 - AluY SINE Alu -19 292 1 27 0 0 0 chr1 210981089 210981116 -31683237 + AT_rich Low_complexity Low_complexity 1 27 0 192 77 0 0 chr1 210982029 210982055 -31682298 + (T)n Simple_repeat Simple_repeat 1 26 0 2448 144 33 9 chr1 210982548 210982972 -31681381 + MER57B LTR ERV1 1 434 0 234 130 56 0 chr1 210983666 210983720 -31680633 + MER20B DNA MER1_type 601 657 -126 1863 169 0 0 chr1 210983720 210984031 -31680322 - AluJo SINE Alu 0 314 4 22 0 0 0 chr1 210985120 210985142 -31679211 + AT_rich Low_complexity Low_complexity 1 22 0 2026 108 10 39 chr1 210985166 210985471 -31678882 - AluSx SINE Alu -16 296 1 313 223 21 0 chr1 210986571 210986665 -31677688 + CT-rich Low_complexity Low_complexity 1 96 0 2110 182 36 48 chr1 210987340 210988327 -31676026 - L1M2 LINE L1 -714 5586 4651 323 339 0 0 chr1 210988433 210988545 -31675808 + HsTC2 DNA Tc2 495 606 -1292 463 224 104 104 chr1 210988577 210988769 -31675584 + HsTC2 DNA Tc2 700 891 -1007 1816 252 86 40 chr1 210988836 210989478 -31674875 + L2 LINE L2 2024 2694 -620 2929 212 70 24 chr1 210989534 210990323 -31674030 - L1ME2 LINE L1 -22 6142 5318 525 290 135 11 chr1 210990325 210990623 -31673730 + L2 LINE L2 2688 3012 -301 258 105 0 0 chr1 210990792 210990830 -31673523 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 298 227 9 136 chr1 210990831 210990941 -31673412 + L2 LINE L2 3168 3263 -50 1484 206 18 0 chr1 210991126 210991426 -31672927 + AluJo SINE Alu 1 305 0 227 246 18 0 chr1 210991503 210991560 -31672793 + (TA)n Simple_repeat Simple_repeat 1 58 0 468 248 88 0 chr1 210991629 210991754 -31672599 - MIR SINE MIR -75 187 52 1699 175 3 18 chr1 210992298 210992616 -31671737 - AluJo SINE Alu 0 314 1 525 262 129 41 chr1 210992739 210993205 -31671148 + L1M4 LINE L1 4733 5239 -907 272 91 23 0 chr1 210994278 210994322 -31670031 + (TTTTC)n Simple_repeat Simple_repeat 3 47 0 442 298 122 5 chr1 210994671 210994867 -31669486 + MIR SINE MIR 34 251 -11 180 337 0 35 chr1 210994909 210994995 -31669358 + L3b LINE CR1 1310 1392 -191 489 317 83 44 chr1 210995462 210995948 -31668405 - L2 LINE L2 -26 3246 2744 926 314 204 18 chr1 210997220 210997618 -31666735 + MER115 DNA AcHobo 74 545 -148 574 250 169 7 chr1 210997627 210997775 -31666578 - MER5A DNA MER1_type -9 180 9 532 203 156 0 chr1 210997784 210997912 -31666441 + MER115 DNA AcHobo 539 686 -7 5792 182 35 20 chr1 210998786 211000707 -31663646 - L1MC1 LINE L1 -5 6328 4381 441 280 70 14 chr1 211000845 211000988 -31663365 - L2 LINE L2 0 3313 3163 204 97 0 0 chr1 211001036 211001067 -31663286 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2293 94 3 3 chr1 211001313 211001612 -31662741 - AluSp SINE Alu -14 299 1 22 0 0 0 chr1 211003382 211003404 -31660949 + AT_rich Low_complexity Low_complexity 1 22 0 301 362 58 12 chr1 211004390 211004562 -31659791 + MIR3 SINE MIR 44 222 -40 1523 308 14 12 chr1 211004656 211005205 -31659148 + L2 LINE L2 2472 3021 -292 2274 104 3 0 chr1 211005279 211005577 -31658776 + AluSp SINE Alu 9 307 -6 1114 112 37 0 chr1 211005903 211006090 -31658263 + L1MA4 LINE L1 6093 6286 -14 357 24 0 0 chr1 211008013 211008055 -31656298 + (TG)n Simple_repeat Simple_repeat 1 42 0 306 73 0 0 chr1 211009064 211009105 -31655248 + (CA)n Simple_repeat Simple_repeat 2 42 0 200 263 93 51 chr1 211009261 211009379 -31654974 - MIR SINE MIR -77 131 9 1570 246 18 15 chr1 211009444 211009839 -31654514 + MSTD LTR MaLR 1 396 0 941 207 27 36 chr1 211009907 211010129 -31654224 + MER58A DNA MER1_type 5 224 0 786 217 77 19 chr1 211011273 211011480 -31652873 + MIR SINE MIR 34 252 -10 431 340 121 26 chr1 211012000 211012742 -31651611 + L2 LINE L2 2246 3055 -217 194 349 16 0 chr1 211012746 211012809 -31651544 - L2 LINE L2 -18 3295 3232 789 297 96 4 chr1 211013049 211013278 -31651075 + MIR SINE MIR 13 262 0 329 107 0 18 chr1 211013427 211013483 -31650870 + (CA)n Simple_repeat Simple_repeat 2 56 0 405 285 92 72 chr1 211014677 211014884 -31649469 + MIR SINE MIR 7 217 -45 1961 148 0 0 chr1 211014957 211015241 -31649112 - AluJb SINE Alu -12 300 17 330 87 0 0 chr1 211015401 211015447 -31648906 + (TG)n Simple_repeat Simple_repeat 2 47 0 1249 272 155 28 chr1 211017714 211018176 -31646177 + MER69 DNA AcHobo 1 534 -1992 1530 175 29 19 chr1 211018176 211018293 -31646060 + AluJb SINE Alu 1 115 -197 198 0 0 0 chr1 211018293 211018315 -31646038 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1530 175 29 19 chr1 211018315 211018506 -31645847 + AluJb SINE Alu 115 312 0 1249 272 155 28 chr1 211018506 211018547 -31645806 + MER69 DNA AcHobo 534 568 -1958 * 2294 163 18 11 chr1 211018545 211018999 -31645354 + MER69 DNA AcHobo 2010 2466 -60 1312 278 108 20 chr1 211019418 211019864 -31644489 + LTR16C LTR ERVL 4 488 -3 1480 159 87 18 chr1 211020918 211021194 -31643159 + AluJb SINE Alu 11 305 -7 2373 124 21 21 chr1 211022386 211022773 -31641580 + Tigger2a DNA MER2_type 3 389 -45 1936 165 15 24 chr1 211022825 211023165 -31641188 + MER1B DNA MER1_type 1 337 0 366 302 129 7 chr1 211023317 211023456 -31640897 - L2 LINE L2 0 3313 3158 357 93 0 0 chr1 211023480 211023534 -31640819 + (GGATG)n Simple_repeat Simple_repeat 1 54 0 426 269 56 9 chr1 211024110 211024218 -31640135 + L2 LINE L2 3193 3305 -8 371 304 128 26 chr1 211024557 211024784 -31639569 + L2 LINE L2 3010 3259 -54 180 0 0 0 chr1 211024805 211024825 -31639528 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 189 0 0 0 chr1 211026274 211026295 -31638058 + (CA)n Simple_repeat Simple_repeat 2 22 0 2158 77 14 17 chr1 211026397 211026694 -31637659 - AluY SINE Alu -15 296 1 669 328 88 11 chr1 211026946 211027309 -31637044 + L2 LINE L2 2457 2847 -467 251 352 56 28 chr1 211028568 211028676 -31635677 - L2 LINE L2 0 3272 3162 357 321 98 29 chr1 211031154 211031386 -31632967 - MIR SINE MIR -3 259 13 186 43 0 0 chr1 211031541 211031564 -31632789 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2103 181 78 11 chr1 211031987 211032424 -31631929 - MLT1C LTR MaLR 0 467 2 182 286 36 60 chr1 211033241 211033325 -31631028 - L2 LINE L2 0 3313 3232 * 955 305 31 3 chr1 211033305 211033665 -31630688 - L2 LINE L2 -245 3068 2698 208 196 39 0 chr1 211033815 211033829 -31630524 + GA-rich Low_complexity Low_complexity 2 14 -40 2092 148 0 0 chr1 211033829 211034139 -31630214 + AluSx SINE Alu 3 312 0 208 196 39 0 chr1 211034139 211034175 -31630178 + GA-rich Low_complexity Low_complexity 14 54 0 1640 218 136 62 chr1 211034318 211034817 -31629536 + MLT1F LTR MaLR 1 536 -6 413 292 112 6 chr1 211035034 211035195 -31629158 + MIR SINE MIR 21 198 -64 238 198 11 33 chr1 211035334 211035425 -31628928 + (TAA)n Simple_repeat Simple_repeat 1 89 0 2190 125 43 6 chr1 211036046 211036397 -31627956 + THE1B LTR MaLR 1 364 0 277 198 105 12 chr1 211037054 211037140 -31627213 - MIR3 SINE MIR -53 155 62 2318 126 8 0 chr1 211038330 211038687 -31625666 - MER46B DNA MER2_type -1 235 1 224 149 21 0 chr1 211039518 211039565 -31624788 + CT-rich Low_complexity Low_complexity 2 49 0 309 367 0 18 chr1 211039571 211039680 -31624673 - L2 LINE L2 -6 3307 3201 383 273 78 8 chr1 211040013 211040141 -31624212 - MIR SINE MIR -106 156 20 2400 107 0 0 chr1 211041501 211041811 -31622542 - AluSg SINE Alu 0 310 1 292 289 0 39 chr1 211043795 211043899 -31620454 - MER69 DNA AcHobo -1 2525 2426 369 257 0 0 chr1 211043899 211043973 -31620380 - MER69 DNA AcHobo -2452 74 1 1537 199 22 85 chr1 211044619 211045030 -31619323 - MLT1B LTR MaLR -5 385 1 21 57 0 0 chr1 211045947 211045982 -31618371 + AT_rich Low_complexity Low_complexity 1 35 0 189 107 0 0 chr1 211047171 211047199 -31617154 + (A)n Simple_repeat Simple_repeat 1 28 0 365 322 45 20 chr1 211047277 211047479 -31616874 + MIR SINE MIR 50 256 -6 802 204 64 60 chr1 211047530 211047765 -31616588 - MER46C DNA MER2_type -87 251 16 363 325 121 21 chr1 211048017 211048257 -31616096 + L2 LINE L2 2620 2883 -431 208 326 128 0 chr1 211049449 211049535 -31614818 + L2 LINE L2 3171 3267 -5 262 221 169 0 chr1 211050073 211050150 -31614203 - MIR3 SINE MIR -36 172 83 231 36 0 0 chr1 211050836 211050864 -31613489 + (CA)n Simple_repeat Simple_repeat 1 28 0 273 281 31 0 chr1 211051115 211051179 -31613174 - tRNA-Ile-ATT tRNA tRNA -3 74 9 259 307 11 11 chr1 211052514 211052602 -31611751 + L2 LINE L2 3225 3312 -1 387 174 0 0 chr1 211052602 211052688 -31611665 + GA-rich Low_complexity Low_complexity 1 86 0 2424 74 0 0 chr1 211053856 211054152 -31610201 + AluY SINE Alu 1 296 -15 798 245 11 22 chr1 211054507 211054691 -31609662 - MIR SINE MIR -16 246 65 386 246 9 15 chr1 211054707 211054844 -31609509 - MIR SINE MIR -61 147 13 369 62 0 0 chr1 211056645 211056693 -31607660 + (CA)n Simple_repeat Simple_repeat 1 48 0 339 25 0 0 chr1 211056692 211056732 -31607621 + (GA)n Simple_repeat Simple_repeat 2 41 0 * 279 190 0 0 chr1 211059962 211060020 -31604333 + CT-rich Low_complexity Low_complexity 1 58 0 596 273 26 13 chr1 211060296 211060450 -31603903 + MIR3 SINE MIR 32 187 -21 643 203 102 89 chr1 211060553 211060868 -31603485 + MER33 DNA MER1_type 2 320 -4 818 250 97 5 chr1 211060881 211061077 -31603276 + MER58C DNA MER1_type 2 215 0 2338 131 35 16 chr1 211061451 211061818 -31602535 + THE1C LTR MaLR 2 375 0 400 234 9 90 chr1 211061818 211061929 -31602424 + MER81 DNA DNA 9 110 -4 195 246 18 18 chr1 211062123 211062180 -31602173 + MIR SINE MIR 84 140 -122 722 161 29 7 chr1 211063369 211063506 -31600847 + L1MB7 LINE L1 6045 6184 0 388 316 68 23 chr1 211063652 211063829 -31600524 - MIR SINE MIR -70 192 8 432 275 29 7 chr1 211064903 211065041 -31599312 + MIR SINE MIR 76 216 -46 911 144 0 0 chr1 211065041 211065173 -31599180 + FLAM_C SINE Alu 2 133 0 6611 100 8 8 chr1 211065677 211066667 -31597686 + L1PA13 LINE L1 5173 6162 -1 2131 161 37 11 chr1 211067084 211067439 -31596914 - THE1B LTR MaLR 0 364 1 10962 92 2 81 chr1 211067439 211069154 -31595199 - THE1B-int LTR MaLR 0 1580 1 2165 158 19 30 chr1 211069154 211069522 -31594831 - THE1B LTR MaLR 0 364 1 353 320 33 0 chr1 211070533 211070655 -31593698 - MIR SINE MIR -130 132 7 405 31 31 16 chr1 211071385 211071449 -31592904 + (CA)n Simple_repeat Simple_repeat 1 65 0 21 0 0 0 chr1 211071667 211071688 -31592665 + AT_rich Low_complexity Low_complexity 1 21 0 206 118 0 0 chr1 211073802 211073836 -31590517 + (CA)n Simple_repeat Simple_repeat 1 34 0 842 298 82 9 chr1 211074325 211074640 -31589713 + L2 LINE L2 2267 2604 -710 399 300 92 41 chr1 211075923 211076296 -31588057 + L2 LINE L2 2649 3057 -256 419 244 106 0 chr1 211076307 211076430 -31587923 + MER103 DNA DNA 20 155 -11 183 375 11 11 chr1 211078741 211078829 -31585524 + MIR SINE MIR 30 117 -91 1573 173 50 4 chr1 211078861 211079019 -31585334 - AluJo SINE Alu -22 290 112 198 0 0 0 chr1 211079019 211079041 -31585312 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1573 173 50 4 chr1 211079041 211079159 -31585194 - AluJo SINE Alu -200 112 1 761 197 39 0 chr1 211080112 211080239 -31584114 + FLAM_A SINE Alu 2 133 0 2120 130 0 0 chr1 211080261 211080546 -31583807 + AluSx SINE Alu 1 285 -27 330 26 0 0 chr1 211080550 211080589 -31583764 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 259 378 71 16 chr1 211082184 211082311 -31582042 + L2 LINE L2 2685 2818 -496 1839 134 66 179 chr1 211082315 211082830 -31581523 - LTR32 LTR ERVL 0 471 15 712 274 168 88 chr1 211083025 211083390 -31580963 + MLT1J2 LTR MaLR 16 409 0 564 307 133 33 chr1 211084775 211084808 -31579545 + HAL1b LINE L1 59 87 -1261 1529 102 79 9 chr1 211084808 211085023 -31579330 - MER30 DNA MER1_type 0 230 1 564 307 133 33 chr1 211085023 211085690 -31578663 + HAL1b LINE L1 87 829 -519 452 153 16 74 chr1 211085977 211086167 -31578186 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 406 211 74 0 chr1 211086178 211086273 -31578080 + L1MC5 LINE L1 7307 7408 -553 1009 277 27 42 chr1 211086371 211086739 -31577614 + L1MC5 LINE L1 6614 6986 -1009 619 267 104 25 chr1 211086746 211086986 -31577367 + L1MC5 LINE L1 7272 7530 -431 21 0 0 0 chr1 211087174 211087195 -31577158 + AT_rich Low_complexity Low_complexity 1 21 0 574 254 35 23 chr1 211087224 211087397 -31576956 - MER5B DNA MER1_type -3 175 1 393 282 132 23 chr1 211087675 211087849 -31576504 - MIR SINE MIR -50 212 20 229 244 0 0 chr1 211087950 211087995 -31576358 + GA-rich Low_complexity Low_complexity 4 48 0 240 311 0 0 chr1 211088016 211088090 -31576263 + MER103 DNA DNA 44 117 -49 906 257 14 67 chr1 211088185 211088531 -31575822 + L2 LINE L2 2986 3313 0 683 320 22 0 chr1 211089357 211089582 -31574771 + MARNA DNA Mariner 30 259 -327 182 328 75 37 chr1 211089599 211089733 -31574620 - MER5A DNA MER1_type -12 177 39 2565 145 73 5 chr1 211089863 211090262 -31574091 - MSTB LTR MaLR 0 426 1 700 271 109 9 chr1 211090517 211090738 -31573615 + MIR SINE MIR 20 262 0 2373 99 3 0 chr1 211091125 211091437 -31572916 - AluSp SINE Alu 0 313 1 3684 89 6 4 chr1 211091888 211092358 -31571995 + L1PA10 LINE L1 5682 6152 -16 341 273 99 33 chr1 211093928 211094049 -31570304 + L2 LINE L2 3185 3313 0 249 300 154 15 chr1 211094326 211094456 -31569897 - MER5A DNA MER1_type -3 186 39 339 268 89 9 chr1 211094511 211094623 -31569730 + MIR SINE MIR 17 137 -71 288 91 0 0 chr1 211094644 211094688 -31569665 + (CCTA)n Simple_repeat Simple_repeat 3 46 0 339 198 0 93 chr1 211095857 211095943 -31568410 - Charlie8 DNA MER1_type -2208 209 132 187 194 0 0 chr1 211095948 211095984 -31568369 + L2 LINE L2 3274 3309 -4 845 267 34 13 chr1 211096037 211096273 -31568080 + MIR SINE MIR 1 241 -21 531 127 0 13 chr1 211097344 211097423 -31566930 + FLAM SINE Alu 44 121 -22 3938 179 61 35 chr1 211097433 211098441 -31565912 + L1MB5 LINE L1 5142 6173 -1 1651 172 0 11 chr1 211098697 211098976 -31565377 - AluJo SINE Alu -30 282 7 22 35 0 0 chr1 211099116 211099145 -31565208 + AT_rich Low_complexity Low_complexity 1 29 0 796 149 7 35 chr1 211100591 211100732 -31563621 - AluJo SINE Alu -165 147 11 428 63 32 0 chr1 211102043 211102106 -31562247 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 201 231 26 51 chr1 211102126 211102204 -31562149 + CT-rich Low_complexity Low_complexity 3 78 0 272 102 20 0 chr1 211103931 211103980 -31560373 + (CGG)n Simple_repeat Simple_repeat 3 52 0 222 221 65 0 chr1 211107748 211107825 -31556528 + (CATATA)n Simple_repeat Simple_repeat 4 85 0 25 31 0 0 chr1 211107864 211107896 -31556457 + AT_rich Low_complexity Low_complexity 1 32 0 396 0 0 0 chr1 211108442 211108486 -31555867 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 213 209 23 0 chr1 211110637 211110680 -31553673 + L3b LINE CR1 1285 1328 -255 356 361 18 6 chr1 211111361 211111530 -31552823 - MER5A DNA MER1_type -6 183 13 230 238 24 36 chr1 211111646 211111730 -31552623 + (TA)n Simple_repeat Simple_repeat 2 84 0 236 174 47 70 chr1 211111805 211111891 -31552462 + L1MC4 LINE L1 6620 6703 -1339 228 223 21 11 chr1 211111893 211111987 -31552366 + (TA)n Simple_repeat Simple_repeat 2 96 0 344 274 11 11 chr1 211112040 211112135 -31552218 - MIR SINE MIR -120 142 48 313 282 0 27 chr1 211113646 211113756 -31550597 + MIR SINE MIR 152 258 -4 2469 44 44 0 chr1 211113893 211114189 -31550164 - AluY SINE Alu -2 309 1 1241 175 18 14 chr1 211114295 211114512 -31549841 - MER20 DNA MER1_type 0 219 2 235 313 60 52 chr1 211116130 211116264 -31548089 + MIR3 SINE MIR 33 167 -41 3055 90 0 5 chr1 211116629 211117031 -31547322 + MLT2A1 LTR ERVL 1 400 -44 192 167 0 0 chr1 211117040 211117088 -31547265 + (TA)n Simple_repeat Simple_repeat 1 48 0 323 78 78 0 chr1 211117090 211117141 -31547212 + MLT2A1 LTR ERVL 399 453 0 227 176 216 0 chr1 211117805 211117856 -31546497 + MIR SINE MIR 85 146 -116 2075 129 3 3 chr1 211118033 211118328 -31546025 - AluSx SINE Alu -17 295 1 216 330 41 31 chr1 211118453 211118550 -31545803 + MIR SINE MIR 1 98 -164 258 327 9 18 chr1 211118625 211118738 -31545615 + CT-rich Low_complexity Low_complexity 1 112 0 206 32 32 0 chr1 211118895 211118926 -31545427 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 630 267 41 20 chr1 211118999 211119194 -31545159 + MIR SINE MIR 49 247 -15 820 257 54 9 chr1 211119335 211119557 -31544796 - MIR SINE MIR 0 262 31 211 283 0 0 chr1 211119837 211119890 -31544463 + (CACCAT)n Simple_repeat Simple_repeat 3 55 0 448 335 5 35 chr1 211120083 211120286 -31544067 - MIR SINE MIR -15 247 51 279 0 0 0 chr1 211120845 211120876 -31543477 + (A)n Simple_repeat Simple_repeat 1 31 0 341 216 24 16 chr1 211121356 211121481 -31542872 + GA-rich Low_complexity Low_complexity 1 126 0 2233 113 0 3 chr1 211121695 211121995 -31542358 - AluSx SINE Alu -13 299 1 24 32 0 0 chr1 211122143 211122174 -31542179 + AT_rich Low_complexity Low_complexity 1 31 0 642 157 0 3 chr1 211122208 211122426 -31541927 + AluJo SINE Alu 6 288 -24 1310 218 13 4 chr1 211122613 211122847 -31541506 + MER8 DNA MER2_type 1 236 -3 490 285 61 49 chr1 211122850 211123096 -31541257 - MIR SINE MIR 0 262 14 234 116 0 0 chr1 211126766 211126809 -31537544 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 539 299 61 14 chr1 211127178 211127392 -31536961 + MIR SINE MIR 6 229 -33 380 250 46 19 chr1 211127393 211127501 -31536852 - L2 LINE L2 -3 3269 3159 350 267 200 11 chr1 211127539 211127718 -31536635 - MIR SINE MIR -32 230 19 264 30 0 0 chr1 211128275 211128308 -31536045 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2599 58 0 6 chr1 211128310 211128622 -31535731 - AluY SINE Alu -1 310 1 2535 74 3 0 chr1 211128867 211129177 -31535176 - AluSp SINE Alu -2 311 1 648 223 8 0 chr1 211129272 211129393 -31534960 - FLAM_A SINE Alu -11 122 1 200 308 26 60 chr1 211130077 211130194 -31534159 - MIR SINE MIR -142 120 8 238 200 0 46 chr1 211130286 211130351 -31534002 + C-rich Low_complexity Low_complexity 4 65 0 260 273 26 0 chr1 211131105 211131182 -31533171 - MIR3 SINE MIR -15 193 115 252 282 24 12 chr1 211131750 211131835 -31532518 + GA-rich Low_complexity Low_complexity 3 88 0 2318 97 0 13 chr1 211133102 211133442 -31530911 - AluSc SINE Alu 0 336 1 243 125 0 0 chr1 211136030 211136070 -31528283 + (T)n Simple_repeat Simple_repeat 1 40 0 25 51 0 0 chr1 211137646 211137685 -31526668 + AT_rich Low_complexity Low_complexity 1 39 0 472 247 86 13 chr1 211140016 211140187 -31524166 - MIR SINE MIR -70 192 3 561 274 43 12 chr1 211140771 211140935 -31523418 + MIR3 SINE MIR 16 184 -24 1798 151 3 7 chr1 211141147 211141432 -31522921 + AluJo SINE Alu 10 293 -19 42 20 0 0 chr1 211141487 211141536 -31522817 + AT_rich Low_complexity Low_complexity 1 49 0 1790 156 3 11 chr1 211141537 211141820 -31522533 - AluJo SINE Alu -29 283 3 237 83 0 0 chr1 211142655 211142691 -31521662 + (TG)n Simple_repeat Simple_repeat 2 37 0 289 304 0 13 chr1 211142691 211142770 -31521583 + Charlie4 DNA MER1_type 1884 1961 0 754 201 93 0 chr1 211143390 211143529 -31520824 + FAM SINE Alu 6 157 -28 326 336 60 0 chr1 211144039 211144155 -31520198 + MIR SINE MIR 8 130 -132 236 174 87 0 chr1 211144465 211144511 -31519842 + L2 LINE L2 3263 3312 -1 804 142 0 0 chr1 211144654 211144767 -31519586 + AluJb SINE Alu 85 197 -115 338 172 0 0 chr1 211144858 211144916 -31519437 + AluJb SINE Alu 199 256 -46 224 360 60 0 chr1 211145206 211145356 -31518997 + MIR SINE MIR 90 248 -14 21 0 0 0 chr1 211145479 211145500 -31518853 + AT_rich Low_complexity Low_complexity 1 21 0 574 254 35 23 chr1 211145528 211145701 -31518652 - MER5B DNA MER1_type -3 175 1 393 282 132 23 chr1 211145980 211146154 -31518199 - MIR SINE MIR -50 212 20 229 244 0 0 chr1 211146255 211146300 -31518053 + GA-rich Low_complexity Low_complexity 4 48 0 240 311 0 0 chr1 211146321 211146395 -31517958 + MER103 DNA DNA 44 117 -49 906 257 14 67 chr1 211146490 211146836 -31517517 + L2 LINE L2 2986 3313 0 683 320 22 0 chr1 211147662 211147887 -31516466 + MARNA DNA Mariner 30 259 -327 182 328 75 37 chr1 211147904 211148038 -31516315 - MER5A DNA MER1_type -12 177 39 2605 145 70 5 chr1 211148168 211148568 -31515785 - MSTB LTR MaLR 0 426 1 700 271 109 9 chr1 211148823 211149044 -31515309 + MIR SINE MIR 20 262 0 2368 99 3 0 chr1 211149431 211149743 -31514610 - AluSp SINE Alu 0 313 1 627 309 51 0 chr1 211149765 211149982 -31514371 - MIR SINE MIR -26 236 9 30 0 0 0 chr1 211149993 211150023 -31514330 + AT_rich Low_complexity Low_complexity 1 30 0 265 276 57 0 chr1 211150041 211150128 -31514225 - MIR SINE MIR -53 155 95 1762 156 0 40 chr1 211151001 211151302 -31513051 + AluJo SINE Alu 1 289 -23 207 0 0 0 chr1 211151302 211151325 -31513028 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 281 282 34 101 chr1 211151437 211151586 -31512767 - L2 LINE L2 -357 2956 2818 425 309 43 14 chr1 211152009 211152148 -31512205 + MIR3 SINE MIR 5 147 -61 358 286 129 28 chr1 211152935 211153113 -31511240 - MIR SINE MIR -32 230 35 324 148 0 0 chr1 211153992 211154053 -31510300 + (CA)n Simple_repeat Simple_repeat 1 61 0 2879 121 21 26 chr1 211156082 211156512 -31507841 + MSTA LTR MaLR 1 428 0 442 299 49 27 chr1 211157729 211157913 -31506440 - MER117 DNA MER1_type -9 188 1 2356 151 83 10 chr1 211158059 211158456 -31505897 - MSTA LTR MaLR 0 428 3 727 274 134 25 chr1 211159411 211159895 -31504458 + MLT1F LTR MaLR 1 537 -5 256 309 96 0 chr1 211160176 211160270 -31504083 + MLT1J-int LTR MaLR 445 547 -824 260 343 34 27 chr1 211160602 211160748 -31503605 + MLT1J-int LTR MaLR 738 884 -487 353 277 103 100 chr1 211160950 211161271 -31503082 + MLT1J-int LTR MaLR 1032 1353 -18 1855 157 0 29 chr1 211161343 211161655 -31502698 + AluJo SINE Alu 1 303 -9 2101 92 44 27 chr1 211162299 211162594 -31501759 - AluSc SINE Alu -7 302 3 1121 267 57 61 chr1 211163059 211163588 -31500765 + L2 LINE L2 2794 3313 0 231 315 56 0 chr1 211164152 211164241 -31500112 - L3b LINE CR1 -152 1431 1338 374 275 0 11 chr1 211164549 211164640 -31499713 + MIR SINE MIR 87 176 -86 489 316 53 11 chr1 211164714 211164901 -31499452 + MIR SINE MIR 3 197 -65 22 56 0 19 chr1 211164901 211164938 -31499415 + AT_rich Low_complexity Low_complexity 1 38 -15 1612 203 10 3 chr1 211164938 211165248 -31499105 + AluJo SINE Alu 1 312 0 22 56 0 19 chr1 211165248 211165264 -31499089 + AT_rich Low_complexity Low_complexity 38 53 0 753 276 23 16 chr1 211165656 211165913 -31498440 - MIR SINE MIR 0 262 4 1756 159 7 10 chr1 211166343 211166632 -31497721 + AluJo SINE Alu 1 288 -24 438 108 0 0 chr1 211166633 211166707 -31497646 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 252 286 14 129 chr1 211167534 211167681 -31496672 - L2 LINE L2 -4 3268 3139 465 323 120 50 chr1 211167841 211168658 -31495695 + L2 LINE L2 2443 3312 -1 306 0 0 0 chr1 211168749 211168783 -31495570 + (CA)n Simple_repeat Simple_repeat 2 35 0 664 312 103 35 chr1 211168885 211169369 -31494984 - L2 LINE L2 -452 2862 2346 505 296 46 0 chr1 211169462 211169614 -31494739 + MLT1J LTR MaLR 71 229 -282 255 235 110 103 chr1 211169830 211169966 -31494387 - L2 LINE L2 -992 2322 2186 294 296 42 0 chr1 211169979 211170050 -31494303 + MIR SINE MIR 32 105 -157 250 235 82 0 chr1 211170090 211170175 -31494178 - MLT1J1 LTR MaLR -8 438 347 2276 82 0 64 chr1 211170296 211170624 -31493729 - AluSp SINE Alu -6 307 1 3684 89 6 4 chr1 211171075 211171545 -31492808 + L1PA10 LINE L1 5682 6152 -16 341 273 99 33 chr1 211173114 211173235 -31491118 + L2 LINE L2 3185 3313 0 249 300 154 15 chr1 211173512 211173642 -31490711 - MER5A DNA MER1_type -3 186 39 339 268 89 9 chr1 211173697 211173809 -31490544 + MIR SINE MIR 17 137 -71 288 91 0 0 chr1 211173830 211173874 -31490479 + (CCTA)n Simple_repeat Simple_repeat 3 46 0 339 198 0 93 chr1 211175043 211175129 -31489224 - Charlie8 DNA MER1_type -2197 220 143 187 194 0 0 chr1 211175134 211175170 -31489183 + L2 LINE L2 3274 3309 -4 845 267 34 13 chr1 211175223 211175459 -31488894 + MIR SINE MIR 1 241 -21 531 127 0 13 chr1 211176530 211176609 -31487744 + FLAM SINE Alu 44 121 -22 3938 179 61 35 chr1 211176619 211177627 -31486726 + L1MB5 LINE L1 5142 6173 -1 1651 172 0 11 chr1 211177883 211178162 -31486191 - AluJo SINE Alu -30 282 7 22 35 0 0 chr1 211178302 211178331 -31486022 + AT_rich Low_complexity Low_complexity 1 29 0 796 149 7 35 chr1 211179776 211179917 -31484436 - AluJo SINE Alu -165 147 11 428 63 32 0 chr1 211181230 211181293 -31483060 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 201 231 26 51 chr1 211181313 211181391 -31482962 + CT-rich Low_complexity Low_complexity 3 78 0 278 87 22 0 chr1 211183136 211183182 -31481171 + (CGG)n Simple_repeat Simple_repeat 3 49 0 180 0 0 0 chr1 211185641 211185661 -31478692 + (TGGG)n Simple_repeat Simple_repeat 4 23 0 212 182 0 23 chr1 211186370 211186414 -31477939 + CT-rich Low_complexity Low_complexity 5 47 0 25 31 0 0 chr1 211187312 211187344 -31477009 + GC_rich Low_complexity Low_complexity 1 32 0 10453 208 40 19 chr1 211191982 211198370 -31465983 + L1MC3 LINE L1 30 8057 -8 281 276 179 28 chr1 211198725 211198870 -31465483 - MIR SINE MIR -89 173 7 23 0 0 0 chr1 211199229 211199252 -31465101 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr1 211200835 211200866 -31463487 + AT_rich Low_complexity Low_complexity 1 31 0 616 204 27 7 chr1 211201643 211201790 -31462563 + L1MD2 LINE L1 6194 6343 -16 373 246 16 57 chr1 211202251 211202373 -31461980 - MIR SINE MIR -56 206 90 2266 122 0 0 chr1 211203054 211203366 -31460987 - AluSx SINE Alu 0 312 1 27 49 0 0 chr1 211203517 211203558 -31460795 + AT_rich Low_complexity Low_complexity 1 41 0 387 210 40 20 chr1 211203888 211203988 -31460365 - L1ME1 LINE L1 -19 6147 6046 611 216 20 7 chr1 211204098 211204246 -31460107 + L1MD2 LINE L1 6196 6345 -14 2900 228 41 14 chr1 211204324 211205038 -31459315 - L1ME1 LINE L1 -112 6054 5322 296 169 268 14 chr1 211205051 211205122 -31459231 - AluJb SINE Alu -9 293 205 825 162 0 22 chr1 211205146 211205312 -31459041 - FLAM_C SINE Alu 0 163 1 189 0 0 0 chr1 211205330 211205351 -31459002 + (TG)n Simple_repeat Simple_repeat 2 22 0 3991 235 33 10 chr1 211205351 211206500 -31457853 - L1ME1 LINE L1 -851 5295 4121 2113 117 13 0 chr1 211206577 211206876 -31457477 - AluSp SINE Alu -10 303 1 2062 147 0 22 chr1 211207943 211208262 -31456091 - AluJo SINE Alu 0 312 1 425 283 14 0 chr1 211209779 211209917 -31454436 + MER103 DNA DNA 25 164 -2 346 157 24 0 chr1 211210541 211210624 -31453729 + (TA)n Simple_repeat Simple_repeat 1 85 0 186 227 32 7 chr1 211211503 211211657 -31452696 + (TA)n Simple_repeat Simple_repeat 1 158 0 21 36 0 0 chr1 211211848 211211876 -31452477 + AT_rich Low_complexity Low_complexity 1 28 0 481 177 115 0 chr1 211211880 211211976 -31452377 + MLT1B LTR MaLR 3 109 -281 783 176 0 0 chr1 211212570 211212695 -31451658 + FLAM_A SINE Alu 1 125 -8 222 312 20 41 chr1 211213404 211213556 -31450797 + MIR SINE MIR 50 197 -64 270 73 0 0 chr1 211213940 211213981 -31450372 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 325 235 163 0 chr1 211214432 211214530 -31449823 - MIR SINE MIR -70 192 79 202 230 220 10 chr1 211214612 211214712 -31449641 + L2 LINE L2 2764 2884 -430 609 271 98 20 chr1 211214716 211215173 -31449180 - LTR33 LTR ERVL 0 521 10 222 348 107 17 chr1 211215179 211215357 -31448996 + L2 LINE L2 2926 3119 -153 2801 176 77 60 chr1 211215505 211216288 -31448065 - L1MC4 LINE L1 -5 8037 7242 340 285 54 23 chr1 211216981 211217111 -31447242 + L2 LINE L2 3139 3272 0 1877 75 4 4 chr1 211217113 211217380 -31446973 + AluY SINE Alu 45 311 0 638 271 120 59 chr1 211217587 211217934 -31446419 - L1MD2 LINE L1 -2 6357 5972 2255 113 0 0 chr1 211217934 211218243 -31446110 - AluSx SINE Alu -3 309 1 638 271 120 59 chr1 211218243 211218371 -31445982 - L1MD2 LINE L1 -387 5972 5853 3024 176 92 35 chr1 211218454 211218995 -31445358 - L1MA9 LINE L1 -39 6273 5683 2127 117 3 3 chr1 211218995 211219304 -31445049 - AluSx SINE Alu -3 309 1 3024 176 92 35 chr1 211219304 211219448 -31444905 - L1MA9 LINE L1 -629 5683 5549 400 353 98 25 chr1 211219448 211219814 -31444539 + L2 LINE L2 2157 2549 -765 498 181 11 0 chr1 211219921 211220015 -31444338 - L1MA9 LINE L1 -39 6273 6179 468 322 71 6 chr1 211220015 211220198 -31444155 + MIR SINE MIR 68 262 0 211 241 36 48 chr1 211220200 211220283 -31444070 - L2 LINE L2 -2 3311 3230 1224 288 25 39 chr1 211220335 211220769 -31443584 + LTR16B LTR ERVL 37 464 0 860 330 36 38 chr1 211220769 211221220 -31443133 - L2 LINE L2 -181 3132 2671 1255 229 173 42 chr1 211221262 211221743 -31442610 + MLT1E LTR MaLR 1 544 -49 21 36 0 0 chr1 211221743 211221771 -31442582 + AT_rich Low_complexity Low_complexity 1 28 0 296 216 14 0 chr1 211221771 211221845 -31442508 + MLT1D LTR MaLR 431 505 0 1350 229 86 68 chr1 211221848 211222316 -31442037 - L2 LINE L2 -657 2657 2182 545 247 32 38 chr1 211222341 211222527 -31441826 + L2 LINE L2 2579 2763 -551 998 252 117 72 chr1 211222530 211222999 -31441354 - MLT1H LTR MaLR -3 546 57 242 389 9 0 chr1 211223031 211223139 -31441214 + L2 LINE L2 2757 2865 -449 2370 60 3 0 chr1 211223151 211223490 -31440863 - AluY SINE Alu 0 340 1 684 149 9 0 chr1 211223505 211223619 -31440734 - L1MC1 LINE L1 -17 6316 6202 313 295 157 55 chr1 211223706 211223730 -31440623 + L2 LINE L2 2947 2967 -346 1222 150 59 16 chr1 211223730 211223983 -31440370 - L1MA9 LINE L1 0 6312 6049 313 295 157 55 chr1 211223983 211224175 -31440178 + L2 LINE L2 2967 3185 -128 1624 197 62 17 chr1 211224763 211225118 -31439235 + MLT1A2 LTR MaLR 4 374 0 441 281 41 0 chr1 211225569 211225715 -31438638 + MLT1J2 LTR MaLR 16 167 -283 302 285 80 66 chr1 211226832 211226983 -31437370 - HAL1 LINE L1 -2342 165 13 207 273 78 16 chr1 211227062 211227190 -31437163 + L2 LINE L2 3099 3234 -79 413 250 99 72 chr1 211229601 211229753 -31434600 + MIR3 SINE MIR 40 195 -13 424 376 112 21 chr1 211229796 211230557 -31433796 - L2 LINE L2 -11 3261 2441 2466 198 72 8 chr1 211231469 211231958 -31432395 + MLT2B1 LTR ERVL 1 520 0 608 286 34 10 chr1 211232752 211232958 -31431395 + MIR SINE MIR 34 244 -18 203 158 53 0 chr1 211232926 211232964 -31431389 + L2 LINE L2 3258 3297 -16 * 22 70 0 0 chr1 211233698 211233741 -31430612 + AT_rich Low_complexity Low_complexity 1 43 0 350 301 40 16 chr1 211233915 211234155 -31430198 - L1MC4a LINE L1 -320 5850 5620 630 258 144 42 chr1 211234260 211234594 -31429759 + MLT1G1 LTR MaLR 213 580 -15 239 174 0 43 chr1 211234588 211234634 -31429719 - LTR23 LTR ERV1 -72 365 322 * 272 182 61 0 chr1 211234671 211234737 -31429616 - L1MC4a LINE L1 -2361 5447 5378 843 158 0 0 chr1 211234908 211235035 -31429318 - AluSc SINE Alu -49 260 134 236 401 29 0 chr1 211235278 211235415 -31428938 - MIR3 SINE MIR -32 176 36 584 141 0 11 chr1 211235456 211235548 -31428805 + AluJ/FLAM SINE Alu 1 91 -221 1457 167 4 13 chr1 211235548 211235866 -31428487 + AluSg SINE Alu 46 361 0 439 208 31 0 chr1 211235965 211236061 -31428292 - MLT1K LTR MaLR -1 587 489 430 298 44 0 chr1 211236236 211236350 -31428003 - MLT1K LTR MaLR -348 240 122 2889 233 72 31 chr1 211236840 211237697 -31426656 - L1ME1 LINE L1 -5 6161 5270 582 259 0 7 chr1 211238154 211238289 -31426064 - MLT1E1 LTR MaLR -497 157 24 2931 131 0 2 chr1 211238427 211238855 -31425498 - MSTA LTR MaLR 0 428 2 486 205 94 47 chr1 211239403 211239530 -31424823 - MER94 DNA DNA -1 133 1 183 80 0 0 chr1 211239574 211239599 -31424754 + (CA)n Simple_repeat Simple_repeat 1 25 0 25 31 0 0 chr1 211239725 211239757 -31424596 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr1 211242658 211242686 -31421667 + AT_rich Low_complexity Low_complexity 1 28 0 14843 136 12 7 chr1 211242962 211243007 -31421346 - Tigger1 DNA MER2_type 0 2418 2375 2376 127 3 37 chr1 211243007 211243191 -31421162 + THE1B LTR MaLR 1 167 -197 2226 96 33 0 chr1 211243191 211243494 -31420859 + AluSq SINE Alu 1 313 0 2376 127 3 37 chr1 211243494 211243686 -31420667 + THE1B LTR MaLR 167 364 0 14843 136 12 7 chr1 211243686 211246011 -31418342 - Tigger1 DNA MER2_type -43 2375 41 257 178 0 0 chr1 211246267 211246312 -31418041 - Tigger1 DNA MER2_type -2373 45 1 2499 248 93 18 chr1 211247064 211247250 -31417103 - L1ME2 LINE L1 0 6233 6062 555 239 68 0 chr1 211247250 211247367 -31416986 - FLAM_C SINE Alu -4 129 5 2499 248 93 18 chr1 211247367 211248819 -31415534 - L1ME2 LINE L1 -171 6062 4465 5966 139 35 6 chr1 211248822 211249899 -31414454 - L1MA3 LINE L1 0 6305 5200 2672 257 105 31 chr1 211249904 211251242 -31413111 - L1ME2 LINE L1 -1745 4470 3034 4479 197 37 5 chr1 211251261 211252511 -31411842 - L1MB2 LINE L1 -7 6164 4879 313 306 0 12 chr1 211252513 211252598 -31411755 - L1ME2 LINE L1 -3167 3048 2965 2002 266 64 47 chr1 211252688 211253020 -31411333 - L1ME2 LINE L1 -3980 2416 2091 2182 142 8 32 chr1 211253020 211253393 -31410960 + THE1B LTR MaLR 1 364 0 11121 106 10 3 chr1 211253393 211254959 -31409394 + THE1B-int LTR MaLR 1 1578 -2 2051 130 62 31 chr1 211254961 211255314 -31409039 + THE1B LTR MaLR 1 364 0 2002 266 64 47 chr1 211255314 211255539 -31408814 - L1ME2 LINE L1 -4305 2091 1871 1987 130 10 10 chr1 211255539 211255847 -31408506 + AluSx SINE Alu 1 308 -4 2002 266 64 47 chr1 211255847 211256057 -31408296 - L1ME2 LINE L1 -4525 1871 1666 2100 128 0 14 chr1 211256057 211256354 -31407999 - AluSx SINE Alu -19 293 1 2002 266 64 47 chr1 211256354 211256617 -31407736 - L1ME2 LINE L1 -4730 1666 1209 1199 217 12 56 chr1 211256619 211256960 -31407393 - L1MA9 LINE L1 -15 6297 5972 2314 75 0 0 chr1 211256962 211257254 -31407099 - AluY SINE Alu -19 292 1 2009 154 9 79 chr1 211257260 211257437 -31406916 - L1MA9 LINE L1 -626 5686 5498 180 0 0 0 chr1 211257437 211257457 -31406896 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1753 160 4 0 chr1 211257460 211257735 -31406618 - AluJb SINE Alu -36 276 1 2009 154 9 79 chr1 211257735 211257833 -31406520 - L1MA9 LINE L1 -816 5496 5393 1993 145 0 3 chr1 211257833 211258137 -31406216 - AluSx SINE Alu -9 303 1 2009 154 9 79 chr1 211258137 211258516 -31405837 - L1MA9 LINE L1 -919 5393 5067 684 258 48 36 chr1 211258545 211259154 -31405199 - L1ME2 LINE L1 -5033 1184 689 700 314 42 27 chr1 211259472 211259873 -31404480 - L1ME2 LINE L1 -5968 428 22 226 239 0 0 chr1 211260623 211260669 -31403684 + Tigger7 DNA MER2_type 1131 1176 -1311 2340 57 34 17 chr1 211260914 211261211 -31403142 + AluY SINE Alu 1 302 -9 2066 136 0 0 chr1 211261294 211261613 -31402740 + AluSx SINE Alu 1 312 0 552 88 66 0 chr1 211262604 211262695 -31401658 - L1PA10 LINE L1 -4 6164 6068 1612 233 2 31 chr1 211262941 211263396 -31400957 - L1PA10 LINE L1 -167 6001 5560 * 5605 118 8 38 chr1 211263372 211264303 -31400050 - L1P LINE L1 -1373 4773 3871 242 344 25 113 chr1 211265396 211265794 -31398559 + L2 LINE L2 2896 3258 -14 1759 147 7 18 chr1 211268990 211269297 -31395056 - AluSq SINE Alu 0 304 1 260 214 89 0 chr1 211269578 211269634 -31394719 - L2 LINE L2 -13 3300 3240 317 336 95 15 chr1 211269776 211269913 -31394440 - L2 LINE L2 0 3272 3125 264 403 77 14 chr1 211270239 211270730 -31393623 - L2 LINE L2 -2275 1039 518 375 294 27 20 chr1 211271805 211271951 -31392402 - MIR SINE MIR -65 197 51 1063 164 12 0 chr1 211272067 211272238 -31392115 - AluJb SINE Alu -7 305 133 200 189 41 41 chr1 211272247 211272369 -31391984 + (TTA)n Simple_repeat Simple_repeat 1 122 0 * 300 174 21 79 chr1 211272295 211272485 -31391868 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 * 357 174 64 23 chr1 211272429 211272601 -31391752 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 2148 108 10 0 chr1 211273097 211273404 -31390949 - AluSx SINE Alu -2 310 1 2333 93 0 10 chr1 211274521 211274832 -31389521 + AluSg SINE Alu 1 308 -2 2246 245 23 7 chr1 211275666 211276221 -31388132 + MLT1F1 LTR MaLR 1 564 -3 913 217 63 0 chr1 211276720 211276909 -31387444 - MER58A DNA MER1_type 0 224 24 825 226 33 17 chr1 211277811 211277992 -31386361 - MER20 DNA MER1_type -5 214 31 1961 164 7 79 chr1 211278652 211278744 -31385609 + MLT1B LTR MaLR 1 98 -292 2218 128 0 0 chr1 211278744 211279080 -31385273 - AluSx SINE Alu 0 312 1 1961 164 7 79 chr1 211279080 211279093 -31385260 + MLT1B LTR MaLR 98 110 -280 2272 109 0 7 chr1 211279093 211279395 -31384958 - AluSx SINE Alu -12 300 1 1961 164 7 79 chr1 211279395 211279708 -31384645 + MLT1B LTR MaLR 110 390 0 218 263 66 26 chr1 211279803 211279879 -31384474 - L2 LINE L2 -9 3263 3185 263 191 206 0 chr1 211280075 211280143 -31384210 + MER46C DNA MER2_type 79 160 -178 5720 73 80 13 chr1 211331517 211331663 -31332690 + L1PA10 LINE L1 5285 5420 -748 1592 99 0 0 chr1 211331663 211331876 -31332477 + AluY SINE Alu 99 311 0 5720 73 80 13 chr1 211331876 211332554 -31331799 + L1PA10 LINE L1 5420 6164 -4 1321 132 69 5 chr1 211333439 211333643 -31330710 - Tigger3(Golem) DNA MER2_type -1 3028 2812 704 298 77 38 chr1 211334892 211335613 -31328740 + L1ME LINE L1 573 1303 -4826 1057 129 32 0 chr1 211335635 211335821 -31328532 - L1MA5 LINE L1 -7 6293 6102 1151 71 0 0 chr1 211335821 211335962 -31328391 - AluSc SINE Alu -12 297 157 4820 142 21 49 chr1 211335962 211336595 -31327758 - L1MA5 LINE L1 -186 6114 5465 1914 125 13 35 chr1 211336595 211336907 -31327446 - AluSq SINE Alu -2 311 7 4820 142 21 49 chr1 211336907 211337943 -31326410 - L1MA5 LINE L1 -835 5465 4473 1252 167 47 8 chr1 211337941 211338198 -31326155 + L1 LINE L1 4130 4396 -1750 * 481 303 8 6 chr1 211338213 211338416 -31325937 + L1ME LINE L1 1322 1622 -868 514 268 100 39 chr1 211338767 211339128 -31325225 + L1ME LINE L1 2106 2502 -3627 4895 63 6 0 chr1 211339128 211339758 -31324595 - L1PA7 LINE L1 -5 6149 5516 514 268 100 39 chr1 211339758 211339858 -31324495 + L1ME LINE L1 2502 2595 -3534 247 277 15 0 chr1 211339888 211339953 -31324400 + L1ME LINE L1 3751 3816 -2313 22 0 0 0 chr1 211340004 211340026 -31324327 + AT_rich Low_complexity Low_complexity 1 22 0 445 255 181 23 chr1 211340119 211340335 -31324018 + MIR SINE MIR 13 262 0 352 288 209 30 chr1 211340914 211341212 -31323141 + L1ME LINE L1 4718 4961 -1168 1486 199 14 11 chr1 211341212 211341493 -31322860 + AluJo SINE Alu 1 282 -30 352 288 209 30 chr1 211341493 211341732 -31322621 + L1ME LINE L1 4961 5366 -763 574 289 47 4 chr1 211341848 211342083 -31322270 + L1ME LINE L1 5487 5731 -373 312 171 57 16 chr1 211342083 211342206 -31322147 + (TA)n Simple_repeat Simple_repeat 2 129 0 1622 126 4 4 chr1 211342206 211342453 -31321900 + THE1C LTR MaLR 1 247 -128 27 0 0 0 chr1 211342563 211342590 -31321763 + AT_rich Low_complexity Low_complexity 1 27 0 2619 171 20 18 chr1 211342593 211343137 -31321216 - L1MA6 LINE L1 -7 6293 5749 453 325 51 51 chr1 211343778 211344015 -31320338 + MIR SINE MIR 23 259 -3 4564 159 45 11 chr1 211344224 211345056 -31319297 + MER6 DNA MER2_type 5 864 -1 1582 122 0 23 chr1 211345107 211345369 -31318984 - L1MA3 LINE L1 0 6305 6050 192 227 23 0 chr1 211345389 211345433 -31318920 + L2 LINE L2 3248 3292 -21 204 289 0 0 chr1 211345732 211345777 -31318576 + polypyrimidine Low_complexity Low_complexity 5 49 0 377 223 11 0 chr1 211345778 211345872 -31318481 - L1MB8 LINE L1 0 6178 6084 440 282 99 0 chr1 211347421 211347563 -31316790 + L2 LINE L2 3100 3255 -17 28 0 0 0 chr1 211347591 211347619 -31316734 + AT_rich Low_complexity Low_complexity 1 28 0 1312 193 120 37 chr1 211348489 211348898 -31315455 + MLT1C LTR MaLR 23 465 -2 371 289 0 0 chr1 211348915 211348998 -31315355 - L2 LINE L2 -8 3305 3223 1052 326 165 19 chr1 211349247 211350120 -31314233 - L2 LINE L2 -454 2860 1861 3802 44 15 6 chr1 211350643 211351122 -31313231 - L1PA7 LINE L1 -2 6152 5670 399 251 129 29 chr1 211351879 211352050 -31312303 - MIR SINE MIR -38 224 37 257 265 59 81 chr1 211352321 211352457 -31311896 + MIR SINE MIR 130 262 0 27 0 0 0 chr1 211352502 211352529 -31311824 + AT_rich Low_complexity Low_complexity 1 27 0 2343 80 33 0 chr1 211354641 211354940 -31309413 - AluSq SINE Alu -4 309 1 3236 176 24 75 chr1 211355903 211356687 -31307666 - L1MB7 LINE L1 0 6184 5465 2104 168 75 5 chr1 211356687 211357085 -31307268 + MSTB LTR MaLR 1 426 0 3236 176 24 75 chr1 211357085 211357166 -31307187 - L1MB7 LINE L1 -719 5465 5381 2419 211 63 2 chr1 211357310 211357791 -31306562 + MLT2B3 LTR ERVL 3 520 -34 828 34 17 8 chr1 211357791 211357908 -31306445 + (TCTA)n Simple_repeat Simple_repeat 2 119 0 2419 211 63 2 chr1 211357908 211357946 -31306407 + MLT2B3 LTR ERVL 520 554 0 1470 187 20 3 chr1 211357946 211358240 -31306113 + MLT1C-int LTR MaLR 1 299 -1436 399 41 0 0 chr1 211358241 211358290 -31306063 + (TG)n Simple_repeat Simple_repeat 2 50 0 2386 82 0 0 chr1 211358405 211358697 -31305656 - AluY SINE Alu -19 292 1 1110 246 62 0 chr1 211358951 211359240 -31305113 + MLT1C-int LTR MaLR 286 592 -1143 2550 225 102 53 chr1 211359402 211360140 -31304213 + MLT1C-int LTR MaLR 798 1658 -77 343 176 0 0 chr1 211360140 211360208 -31304145 - HERVL LTR ERVL -5582 72 5 781 187 45 35 chr1 211360215 211360252 -31304101 - MSTD LTR MaLR -2 394 359 2426 63 7 3 chr1 211360252 211360552 -31303801 + AluY SINE Alu 1 301 -10 781 187 45 35 chr1 211360552 211360712 -31303641 - MSTD LTR MaLR -37 359 195 371 136 0 0 chr1 211360733 211360792 -31303561 + MLT1C-int LTR MaLR 1664 1722 -13 802 187 99 11 chr1 211360816 211360998 -31303355 + MSTD LTR MaLR 3 200 -196 535 106 17 0 chr1 211361002 211361105 -31303248 + MSTC LTR MaLR 343 428 0 1340 207 4 4 chr1 211361110 211361385 -31302968 + HERVL-B3-B3 LTR ERVL 5 279 -5375 * 27437 163 50 9 chr1 211361383 211366418 -31297935 + HERVL-B3-B3 LTR ERVL 401 5638 -126 570 124 0 0 chr1 211366419 211366508 -31297845 + Ricksha DNA DNA 259 347 -2899 2682 176 7 48 chr1 211366508 211367086 -31297267 + MLT2B3 LTR ERVL 1 554 0 620 266 44 44 chr1 211367955 211368343 -31296010 + L1ME4a LINE L1 5576 5963 -158 233 260 0 0 chr1 211368344 211368394 -31295959 + (TA)n Simple_repeat Simple_repeat 1 50 0 3574 212 21 23 chr1 211369129 211370142 -31294211 + L1M4 LINE L1 4310 5320 -826 585 272 25 25 chr1 211370498 211370660 -31293693 + MIR SINE MIR 9 170 -92 1391 154 158 0 chr1 211371282 211371528 -31292825 - AluJo SINE Alu -15 287 3 186 304 76 25 chr1 211373835 211373914 -31290439 + MIR3 SINE MIR 117 199 -9 1993 110 29 0 chr1 211374551 211374854 -31289499 + AluSg SINE Alu 1 311 0 573 226 80 47 chr1 211375674 211375891 -31288462 + MIR SINE MIR 24 249 -13 2078 109 20 23 chr1 211376375 211376679 -31287674 + AluSx SINE Alu 1 303 -9 351 174 11 217 chr1 211377597 211377781 -31286572 + MIR SINE MIR 24 169 -93 211 232 62 45 chr1 211377817 211377929 -31286424 + MIR SINE MIR 147 260 -2 373 301 219 0 chr1 211378210 211378406 -31285947 - MIR SINE MIR -4 258 20 331 273 91 18 chr1 211378974 211379084 -31285269 - L2 LINE L2 -15 3257 3140 238 159 23 0 chr1 211379263 211379307 -31285046 + MER5A DNA MER1_type 1 45 -144 * 278 229 16 0 chr1 211379301 211379362 -31284991 - L2 LINE L2 -27 3286 3225 395 351 48 5 chr1 211379367 211379531 -31284822 + MIR3 SINE MIR 34 203 -5 255 311 56 0 chr1 211379575 211379665 -31284688 - L2 LINE L2 -21 3251 3157 2267 128 120 5 chr1 211379717 211380101 -31284252 - MSTA LTR MaLR 0 428 1 8019 232 24 16 chr1 211380101 211380285 -31284068 - MSTA-int LTR MaLR 0 1651 1470 2261 109 0 3 chr1 211380285 211380589 -31283764 + AluSg1 SINE Alu 1 303 -6 8019 232 24 16 chr1 211380589 211382042 -31282311 - MSTA-int LTR MaLR -181 1470 1 2193 139 108 5 chr1 211382042 211382430 -31281923 - MSTA LTR MaLR 0 428 1 253 343 0 0 chr1 211383296 211383363 -31280990 - MIR SINE MIR -105 103 37 240 283 195 9 chr1 211384169 211384282 -31280071 - L2 LINE L2 -9 3304 3171 299 216 21 21 chr1 211384610 211384707 -31279646 + Charlie2 DNA MER1_type 2677 2773 -89 523 80 57 0 chr1 211384754 211384842 -31279511 - L1MB3 LINE L1 -31 6152 6060 185 279 135 27 chr1 211385952 211386063 -31278290 - L3 LINE CR1 -614 963 841 423 258 68 15 chr1 211386252 211386384 -31277969 + MIR SINE MIR 54 192 -70 252 329 0 24 chr1 211386551 211386636 -31277717 + L2 LINE L2 3231 3313 0 248 333 20 20 chr1 211386683 211386785 -31277568 - L2 LINE L2 -213 3059 2958 278 391 7 14 chr1 211386945 211387083 -31277270 + L2 LINE L2 3145 3281 -32 291 273 26 0 chr1 211387517 211387594 -31276759 + MIR SINE MIR 69 147 -61 259 303 61 23 chr1 211389483 211389615 -31274738 + MIR3 SINE MIR 10 146 -62 414 308 90 55 chr1 211390701 211390858 -31273495 + L2 LINE L2 2934 3084 -229 324 0 0 0 chr1 211390858 211390894 -31273459 + (CA)n Simple_repeat Simple_repeat 1 36 0 414 308 90 55 chr1 211390894 211391103 -31273250 + L2 LINE L2 3084 3313 0 1637 187 7 20 chr1 211391265 211391565 -31272788 - AluJo SINE Alu -5 307 12 516 256 82 63 chr1 211392016 211392223 -31272130 + MLT1H LTR MaLR 73 283 -266 292 212 15 0 chr1 211392600 211392666 -31271687 + MLT1H LTR MaLR 483 549 0 504 248 94 37 chr1 211393101 211393339 -31271014 - MIR SINE MIR 0 262 3 216 255 20 0 chr1 211393982 211394033 -31270320 + MIR SINE MIR 206 257 -5 386 208 94 19 chr1 211395720 211395826 -31268527 + MIR SINE MIR 81 194 -68 312 270 211 24 chr1 211395904 211396262 -31268091 + MIR SINE MIR 5 259 -3 2113 131 49 26 chr1 211396560 211396987 -31267366 + L1MA4A LINE L1 5856 6292 -11 293 270 0 66 chr1 211396992 211397068 -31267285 - HAL1b LINE L1 -30 1318 1253 1931 70 0 0 chr1 211397068 211397311 -31267042 - AluY SINE Alu -11 300 58 293 270 0 66 chr1 211397311 211397371 -31266982 - HAL1b LINE L1 -95 1253 1191 931 291 81 21 chr1 211397499 211397921 -31266432 + MLT1J2 LTR MaLR 2 448 -2 188 277 12 0 chr1 211397938 211398021 -31266332 + CT-rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr1 211398198 211398219 -31266134 + AT_rich Low_complexity Low_complexity 1 21 0 507 325 109 53 chr1 211398632 211399180 -31265173 - HAL1 LINE L1 -737 1770 1192 234 0 0 0 chr1 211399274 211399300 -31265053 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr1 211401184 211401205 -31263148 + AT_rich Low_complexity Low_complexity 1 21 0 188 247 237 31 chr1 211401807 211401904 -31262449 - L2 LINE L2 0 3313 3197 307 343 0 58 chr1 211401978 211402115 -31262238 - L3 LINE CR1 -104 1473 1345 371 293 114 18 chr1 211402117 211402284 -31262069 + MER5B DNA MER1_type 2 173 -5 198 176 0 0 chr1 211402287 211402321 -31262032 - MER5B DNA MER1_type -143 35 2 921 273 197 45 chr1 211402334 211402934 -31261419 - L3 LINE CR1 -237 1340 650 320 209 12 0 chr1 211402997 211403083 -31261270 + GA-rich Low_complexity Low_complexity 2 88 0 22 0 0 0 chr1 211403765 211403787 -31260566 + AT_rich Low_complexity Low_complexity 1 22 0 1332 287 111 27 chr1 211403815 211404678 -31259675 + L2 LINE L2 2213 3159 -154 517 73 48 24 chr1 211404678 211404802 -31259551 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 1711 172 41 22 chr1 211404802 211405168 -31259185 + THE1C LTR MaLR 3 375 0 186 103 0 0 chr1 211405183 211405212 -31259141 + (TAGG)n Simple_repeat Simple_repeat 2 30 0 217 214 0 0 chr1 211405269 211405311 -31259042 - MER5B DNA MER1_type -109 69 28 791 237 119 9 chr1 211405558 211405777 -31258576 + MIR SINE MIR 19 261 -1 334 318 0 28 chr1 211407041 211407148 -31257205 - MIR3 SINE MIR -3 205 102 2166 155 21 12 chr1 211407630 211407766 -31256587 - MER95 LTR ERV 0 431 298 1894 119 4 25 chr1 211407766 211408070 -31256283 - AluSg SINE Alu 0 308 11 2166 155 21 12 chr1 211408070 211408351 -31256002 - MER95 LTR ERV -133 298 9 6036 30 0 0 chr1 211408363 211409109 -31255244 - L1PA3 LINE L1 -1848 4298 3553 8822 28 1 0 chr1 211409110 211410938 -31253415 + L1PA3 LINE L1 4326 6159 0 377 281 104 102 chr1 211411345 211411660 -31252693 + MLT1J LTR MaLR 23 341 -170 1594 124 0 0 chr1 211411660 211411878 -31252475 + AluSg/x SINE Alu 91 308 -4 377 281 104 102 chr1 211411878 211412043 -31252310 + MLT1J LTR MaLR 341 504 -7 569 311 53 10 chr1 211412508 211412723 -31251630 + MIR SINE MIR 37 260 -2 225 0 0 0 chr1 211413730 211413750 -31250603 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr1 211413750 211413775 -31250578 + (CA)n Simple_repeat Simple_repeat 2 26 0 201 333 0 0 chr1 211413897 211413969 -31250384 - MIR SINE MIR -147 115 44 189 313 143 9 chr1 211414137 211414249 -31250104 + MIR SINE MIR 13 139 -123 1270 202 75 116 chr1 211414348 211414882 -31249471 + MLT1F1 LTR MaLR 56 567 0 809 259 98 100 chr1 211416491 211417173 -31247180 + L1MC/D LINE L1 4553 5233 -913 502 286 123 37 chr1 211417193 211417682 -31246671 + L1MC/D LINE L1 5255 5785 -2023 290 266 32 71 chr1 211417695 211417849 -31246504 + L1MC/D LINE L1 5677 5824 -1984 1994 91 35 14 chr1 211417890 211418176 -31246177 - AluSg SINE Alu -18 292 1 232 273 37 19 chr1 211418248 211418409 -31245944 + (TA)n Simple_repeat Simple_repeat 1 164 0 216 179 0 0 chr1 211418739 211418778 -31245575 + (TATG)n Simple_repeat Simple_repeat 3 41 0 23 78 0 0 chr1 211418998 211419049 -31245304 + AT_rich Low_complexity Low_complexity 1 51 0 434 278 93 42 chr1 211419301 211419686 -31244667 - L1ME4a LINE L1 -185 5936 5532 312 314 44 22 chr1 211420678 211420815 -31243538 + MIR SINE MIR 15 154 -108 1867 191 5 28 chr1 211420844 211421079 -31243274 + MLT1B LTR MaLR 2 241 -149 402 77 0 231 chr1 211421079 211421183 -31243170 + MADE1 DNA Mariner 1 80 0 1867 191 5 28 chr1 211421183 211421282 -31243071 + MLT1B LTR MaLR 241 328 -62 2297 97 0 7 chr1 211421282 211421581 -31242772 + AluSp SINE Alu 2 298 -15 1867 191 5 28 chr1 211421581 211421643 -31242710 + MLT1B LTR MaLR 328 390 0 186 152 30 0 chr1 211421643 211421676 -31242677 + L2 LINE L2 3264 3297 -16 223 374 38 8 chr1 211422127 211422258 -31242095 - MIR SINE MIR -108 154 20 453 243 10 19 chr1 211422624 211422727 -31241626 - L2 LINE L2 -13 3300 3199 6924 183 118 16 chr1 211423372 211424960 -31239393 + MER52A LTR ERV1 6 1755 0 1535 297 45 25 chr1 211425611 211426140 -31238213 + MER115 DNA AcHobo 134 673 -20 401 305 16 21 chr1 211426171 211426358 -31237995 - MER5A DNA MER1_type -1 188 3 794 268 28 24 chr1 211426429 211426720 -31237633 + MARNA DNA Mariner 14 305 -281 1414 295 85 51 chr1 211426764 211427700 -31236653 + HAL1 LINE L1 25 1004 -1503 1786 134 79 17 chr1 211427700 211427992 -31236361 + AluSx SINE Alu 1 310 -2 1414 295 85 51 chr1 211427992 211428135 -31236218 + HAL1 LINE L1 1004 1141 -1366 213 188 0 0 chr1 211428139 211428171 -31236182 - L2 LINE L2 -374 2939 2908 * 682 277 186 4 chr1 211428170 211428509 -31235844 - L2 LINE L2 -978 2336 1889 1866 247 71 67 chr1 211428518 211429554 -31234799 + HAL1 LINE L1 1358 2398 -109 2217 124 7 0 chr1 211429853 211430159 -31234194 + AluSx SINE Alu 1 308 -4 28883 102 16 12 chr1 211430186 211432520 -31231833 + L1PA7 LINE L1 8 2332 -4137 246 32 0 0 chr1 211432520 211432551 -31231802 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 28883 102 16 12 chr1 211432551 211436645 -31227708 + L1PA7 LINE L1 2332 6456 -13 378 0 0 0 chr1 211438059 211438101 -31226252 + (TG)n Simple_repeat Simple_repeat 2 43 0 1573 192 31 0 chr1 211438105 211438365 -31225988 - AluJb SINE Alu -44 268 1 366 203 285 8 chr1 211438700 211438823 -31225530 - MLT1L LTR MaLR -371 244 88 1671 149 63 15 chr1 211439145 211439414 -31224939 - AluSx SINE Alu -30 282 1 714 220 29 1 chr1 211440330 211440636 -31223717 + LTR40a LTR ERVL 1 348 -114 5214 170 26 3 chr1 211440988 211441999 -31222354 + L1MC1 LINE L1 5295 6331 -2 29 70 0 0 chr1 211444130 211444187 -31220166 + AT_rich Low_complexity Low_complexity 1 57 0 198 0 0 0 chr1 211445736 211445758 -31218595 + (TG)n Simple_repeat Simple_repeat 2 23 0 274 228 18 0 chr1 211445770 211445827 -31218526 + GA-rich Low_complexity Low_complexity 3 60 0 24 0 0 0 chr1 211447059 211447083 -31217270 + AT_rich Low_complexity Low_complexity 1 24 0 287 316 49 31 chr1 211447272 211447431 -31216922 + MIR SINE MIR 25 183 -77 225 337 81 0 chr1 211447619 211447705 -31216648 - L2 LINE L2 -758 2556 2464 363 283 48 14 chr1 211447782 211447927 -31216426 - L2 LINE L2 0 3313 3164 775 147 0 16 chr1 211448419 211448548 -31215805 + FLAM_C SINE Alu 1 127 -16 253 163 0 0 chr1 211449568 211449611 -31214742 + L2 LINE L2 3271 3313 0 300 325 78 0 chr1 211450114 211450268 -31214085 + L2 LINE L2 2195 2360 -954 359 205 60 0 chr1 211450308 211450391 -31213962 + L1MB7 LINE L1 6000 6087 -97 238 208 0 0 chr1 211450386 211450434 -31213919 + L1ME1 LINE L1 6119 6166 0 * 180 340 0 0 chr1 211450531 211450584 -31213769 + L2 LINE L2 3187 3239 -33 202 363 48 42 chr1 211450860 211451028 -31213325 + L2 LINE L2 2619 2787 -527 1744 161 45 7 chr1 211451795 211452081 -31212272 + AluJb SINE Alu 2 298 -14 244 217 17 33 chr1 211452467 211452527 -31211826 - L2 LINE L2 0 3272 3214 531 0 0 0 chr1 211455033 211455092 -31209261 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1845 172 29 9 chr1 211455228 211455576 -31208777 - THE1A LTR MaLR 0 355 1 194 295 131 0 chr1 211455626 211455687 -31208666 - L2 LINE L2 -39 3274 3206 327 150 0 0 chr1 211456668 211456728 -31207625 + (TG)n Simple_repeat Simple_repeat 1 60 0 312 188 0 0 chr1 211457517 211457581 -31206772 + (CA)n Simple_repeat Simple_repeat 1 64 0 333 255 116 42 chr1 211459846 211460062 -31204291 + L1ME4a LINE L1 5735 5966 -155 720 248 160 19 chr1 211460769 211461088 -31203265 - L1MC/D LINE L1 -2031 5777 5414 307 283 151 7 chr1 211462978 211463130 -31201223 + MIR SINE MIR 89 262 0 368 233 14 0 chr1 211463135 211463208 -31201145 - MIR SINE MIR -105 157 84 2388 48 0 7 chr1 211463605 211463896 -31200457 + AluY SINE Alu 1 289 -22 198 200 0 25 chr1 211465111 211465151 -31199202 + L2 LINE L2 3219 3257 -15 25 0 0 0 chr1 211465657 211465682 -31198671 + AT_rich Low_complexity Low_complexity 1 25 0 248 387 43 47 chr1 211466958 211467211 -31197142 + L2 LINE L2 3016 3267 -5 486 244 69 15 chr1 211468187 211468318 -31196035 + MIR SINE MIR 64 201 -61 704 262 124 9 chr1 211468460 211468685 -31195668 + MIR SINE MIR 2 252 -10 286 377 74 17 chr1 211469009 211469184 -31195169 - L2 LINE L2 -400 2914 2730 1056 223 5 5 chr1 211469188 211469403 -31194950 + AluJo SINE Alu 7 221 -91 27 29 0 0 chr1 211470850 211470884 -31193469 + AT_rich Low_complexity Low_complexity 1 34 0 469 326 30 47 chr1 211471184 211471347 -31193006 + HAL1b LINE L1 83 247 -1101 2331 119 14 6 chr1 211471347 211471699 -31192654 + THE1A LTR MaLR 1 355 0 469 326 30 47 chr1 211471699 211472072 -31192281 + HAL1b LINE L1 247 610 -738 1920 125 33 20 chr1 211472215 211472520 -31191833 + AluSx SINE Alu 1 309 -3 342 317 22 22 chr1 211474324 211474504 -31189849 + L1M4 LINE L1 2650 2829 -3317 2247 87 3 0 chr1 211474532 211474818 -31189535 + AluSg SINE Alu 1 287 -23 2215 103 3 0 chr1 211474847 211475149 -31189204 + AluSq SINE Alu 1 303 -10 403 79 95 0 chr1 211475436 211475499 -31188854 - AluS SINE Alu -239 73 5 4338 146 73 9 chr1 211476234 211477010 -31187343 + LTR1B LTR ERV1 1 826 0 31 64 0 0 chr1 211477469 211477516 -31186837 + AT_rich Low_complexity Low_complexity 1 47 0 190 227 0 23 chr1 211477687 211477731 -31186622 - L2 LINE L2 -834 2480 2438 29 0 0 0 chr1 211477759 211477788 -31186565 + AT_rich Low_complexity Low_complexity 1 29 0 704 117 25 0 chr1 211477790 211477910 -31186443 - FLAM_C SINE Alu -20 123 1 442 293 66 6 chr1 211478247 211478414 -31185939 - MIR SINE MIR -10 252 76 565 329 64 5 chr1 211478750 211479127 -31185226 + L1M4 LINE L1 4747 5145 -1001 225 0 0 0 chr1 211479146 211479171 -31185182 + (T)n Simple_repeat Simple_repeat 1 25 0 406 256 40 14 chr1 211479281 211479504 -31184849 - L1M1 LINE L1 -7321 244 16 270 0 0 0 chr1 211479547 211479577 -31184776 + (CA)n Simple_repeat Simple_repeat 2 31 0 1162 259 176 6 chr1 211479668 211480151 -31184202 - HAL1 LINE L1 -433 2074 1510 349 287 72 86 chr1 211480160 211480344 -31184009 - HAL1 LINE L1 -1269 1238 1058 2240 128 0 0 chr1 211480344 211480656 -31183697 - AluSx SINE Alu 0 312 1 349 287 72 86 chr1 211480656 211480750 -31183603 - HAL1 LINE L1 -1449 1058 964 15959 142 71 17 chr1 211481387 211484513 -31179840 + L1MA2 LINE L1 671 3965 -3600 7123 95 17 22 chr1 211484508 211485748 -31178605 + L1MA2 LINE L1 6487 7722 -1 * 697 222 38 38 chr1 211485762 211485974 -31178379 + HAL1 LINE L1 2269 2480 -27 1758 175 3 28 chr1 211486018 211486338 -31178015 + AluJo SINE Alu 1 312 0 643 300 5 26 chr1 211486429 211486619 -31177734 - MIR SINE MIR -74 188 3 433 155 30 131 chr1 211486773 211487098 -31177255 - L1ME1 LINE L1 -123 6043 5680 1462 213 7 20 chr1 211487099 211487395 -31176958 - AluJb SINE Alu -9 303 12 366 143 0 0 chr1 211487416 211487472 -31176881 - Alu SINE Alu -12 290 235 284 211 0 0 chr1 211487498 211487560 -31176793 - L1ME1 LINE L1 -552 5614 5561 1177 196 39 5 chr1 211487576 211487970 -31176383 - L1ME1 LINE L1 -743 5403 5072 1639 227 21 72 chr1 211488002 211488487 -31175866 + MLT2B1 LTR ERVL 21 480 -40 388 286 0 11 chr1 211488488 211488670 -31175683 + (TA)n Simple_repeat Simple_repeat 1 180 0 301 207 23 23 chr1 211488675 211488762 -31175591 + L1MC4 LINE L1 6617 6703 -1339 441 170 40 0 chr1 211488800 211488900 -31175453 - L1ME1 LINE L1 -1071 5075 4972 2384 190 58 0 chr1 211488900 211489347 -31175006 - MLT2B1 LTR ERVL -47 473 1 449 264 28 61 chr1 211489349 211489561 -31174792 - L1ME1 LINE L1 -1167 4979 4775 1634 112 66 0 chr1 211489588 211489830 -31174523 - MER7A DNA MER2_type -90 256 1 1154 216 32 4 chr1 211489830 211490108 -31174245 - L1ME1 LINE L1 -1371 4775 4490 588 149 0 0 chr1 211490313 211490407 -31173946 - AluJ SINE Alu -6 306 213 963 154 0 0 chr1 211490408 211490551 -31173802 - AluJ SINE Alu -169 143 1 29 90 0 0 chr1 211494556 211494634 -31169719 + AT_rich Low_complexity Low_complexity 1 78 0 1276 238 0 31 chr1 211494647 211494941 -31169412 - AluJo SINE Alu -27 285 1 216 0 0 0 chr1 211495155 211495179 -31169174 + (A)n Simple_repeat Simple_repeat 1 24 0 5948 131 23 21 chr1 211496980 211498419 -31165934 - SVA Other Other -617 1383 32 29 47 0 0 chr1 211498480 211498523 -31165830 + AT_rich Low_complexity Low_complexity 1 43 0 2681 124 2 139 chr1 211500225 211500766 -31163587 + MER1A DNA MER1_type 63 529 0 261 0 0 0 chr1 211501075 211501104 -31163249 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2522 166 34 2 chr1 211503007 211503448 -31160905 + MSTB2 LTR MaLR 1 455 -2 527 283 169 5 chr1 211503994 211504178 -31160175 + MIR SINE MIR 8 221 -41 273 29 0 0 chr1 211504803 211504837 -31159516 + (CA)n Simple_repeat Simple_repeat 2 35 0 245 311 148 16 chr1 211504996 211505118 -31159235 + L2 LINE L2 3134 3271 -1 210 283 87 54 chr1 211505879 211505971 -31158382 + L2 LINE L2 3145 3239 -33 500 271 108 20 chr1 211505989 211506192 -31158161 - MIR SINE MIR -6 256 36 474 340 127 30 chr1 211506189 211506592 -31157761 - L2 LINE L2 -1 3271 2830 * 1991 133 0 37 chr1 211506648 211506972 -31157381 - AluJb SINE Alu 0 312 1 553 136 29 0 chr1 211507003 211507106 -31157247 - Charlie1 DNA MER1_type -33 2728 2623 816 223 30 0 chr1 211507124 211507290 -31157063 - Charlie1 DNA MER1_type -2590 171 1 221 189 0 0 chr1 211507299 211507336 -31157017 + MER5A DNA MER1_type 3 39 -150 * 223 387 81 0 chr1 211507308 211507419 -31156934 + L2 LINE L2 3133 3252 -20 2162 135 0 0 chr1 211507697 211508008 -31156345 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr1 211508192 211508219 -31156134 + AT_rich Low_complexity Low_complexity 1 27 0 33 43 0 0 chr1 211508459 211508506 -31155847 + AT_rich Low_complexity Low_complexity 1 47 0 258 349 87 0 chr1 211508557 211508683 -31155670 - MIR SINE MIR -122 140 4 203 292 0 0 chr1 211508749 211508797 -31155556 - L2 LINE L2 -749 2565 2518 267 31 0 0 chr1 211509270 211509302 -31155051 + (GA)n Simple_repeat Simple_repeat 2 33 0 1538 85 20 0 chr1 211509344 211509544 -31154809 - AluSc SINE Alu -105 204 1 237 109 109 0 chr1 211509807 211509853 -31154500 + L2 LINE L2 3262 3312 -1 689 221 32 6 chr1 211510059 211510217 -31154136 - MER20 DNA MER1_type 0 219 58 201 74 0 0 chr1 211510474 211510501 -31153852 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 205 390 51 8 chr1 211511960 211512078 -31152275 + MIR SINE MIR 26 148 -114 525 256 33 8 chr1 211512119 211512240 -31152113 + MIR SINE MIR 69 192 -70 2360 90 3 0 chr1 211513164 211513476 -31150877 + AluSp SINE Alu 1 313 0 2488 78 3 0 chr1 211515221 211515530 -31148823 + AluSp SINE Alu 1 310 -3 185 271 57 71 chr1 211516293 211516363 -31147990 - L2 LINE L2 -212 3060 2992 2428 74 3 0 chr1 211516668 211516967 -31147386 - AluSp SINE Alu -13 300 1 331 258 186 93 chr1 211517280 211517456 -31146897 + L1ME4a LINE L1 5546 5704 -417 2399 83 0 3 chr1 211517456 211517768 -31146585 + AluY SINE Alu 1 311 0 331 258 186 93 chr1 211517768 211517924 -31146429 + L1ME4a LINE L1 5704 5909 -212 880 281 133 53 chr1 211517925 211518725 -31145628 - L2 LINE L2 0 3313 2425 2008 137 0 0 chr1 211519034 211519326 -31145027 + AluSq SINE Alu 1 292 -21 233 288 72 36 chr1 211519759 211519870 -31144483 + MIR SINE MIR 91 205 -57 2147 87 7 3 chr1 211519887 211520173 -31144180 - AluSq SINE Alu -26 287 1 1043 297 111 81 chr1 211520432 211521358 -31142995 + L3 LINE CR1 249 1202 -375 460 111 37 12 chr1 211521365 211521446 -31142907 + AluJo SINE Alu 62 144 -168 228 122 0 0 chr1 211521446 211521487 -31142866 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 908 147 0 51 chr1 211521492 211521648 -31142705 + AluSq SINE Alu 122 269 -44 180 97 0 0 chr1 211521658 211521689 -31142664 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 704 125 0 8 chr1 211521689 211521809 -31142544 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 328 224 71 100 chr1 211521930 211522100 -31142253 + L3 LINE CR1 1214 1378 -199 208 320 10 40 chr1 211522324 211522424 -31141929 - MIR SINE MIR -130 132 36 444 302 34 20 chr1 211522435 211522584 -31141769 - MER5B DNA MER1_type -7 171 21 543 266 35 65 chr1 211524533 211524762 -31139591 - MIR SINE MIR -10 252 31 274 347 48 16 chr1 211525041 211525165 -31139188 - MIR SINE MIR -61 147 20 207 268 0 0 chr1 211525990 211526046 -31138307 + (CATA)n Simple_repeat Simple_repeat 1 56 0 590 255 60 22 chr1 211527249 211527433 -31136920 + MIR SINE MIR 2 192 -70 2205 95 3 0 chr1 211527668 211527978 -31136375 - AluSp SINE Alu 0 311 1 180 0 0 0 chr1 211528123 211528143 -31136210 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1490 163 3 78 chr1 211528174 211528481 -31135872 - AluJo SINE Alu -26 286 3 322 192 0 0 chr1 211529841 211529893 -31134460 + MER3 DNA MER1_type 42 93 -116 357 219 0 105 chr1 211530616 211530679 -31133674 + MER5A DNA MER1_type 13 62 -127 2634 14 0 3 chr1 211530679 211530972 -31133381 + AluYb8 SINE Alu 22 313 -5 357 219 0 105 chr1 211530972 211531013 -31133340 + MER5A DNA MER1_type 62 106 -83 32 75 0 0 chr1 211531652 211531719 -31132634 + AT_rich Low_complexity Low_complexity 1 67 0 2174 92 0 10 chr1 211531757 211532051 -31132302 + AluSg SINE Alu 1 291 -19 45 26 0 39 chr1 211532404 211532482 -31131871 + AT_rich Low_complexity Low_complexity 1 75 0 680 276 69 20 chr1 211532736 211532982 -31131371 - MIR SINE MIR 0 262 5 2000 98 0 79 chr1 211533800 211534117 -31130236 + AluSg SINE Alu 1 292 -18 180 0 0 0 chr1 211535733 211535753 -31128600 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 420 276 111 39 chr1 211535801 211535982 -31128371 + MIR SINE MIR 14 207 -55 31 58 0 0 chr1 211536315 211536367 -31127986 + AT_rich Low_complexity Low_complexity 1 52 0 230 79 0 26 chr1 211536427 211536465 -31127888 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 201 108 0 0 chr1 211537649 211537686 -31126667 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1938 131 7 4 chr1 211537687 211537962 -31126391 - AluSx SINE Alu -32 280 5 226 265 124 48 chr1 211540624 211540738 -31123615 - MIR SINE MIR -60 148 28 296 369 48 2 chr1 211540957 211541147 -31123206 - MIR SINE MIR -46 216 17 12391 99 16 25 chr1 211541198 211543118 -31121235 + L1PA7 LINE L1 2 1926 -4535 20405 84 3 0 chr1 211543134 211546782 -31117571 + L1PA7 LINE L1 2789 6466 -3 379 308 199 19 chr1 211546943 211547209 -31117144 - L1MEd LINE L1 -3783 2346 2076 544 260 93 48 chr1 211547507 211548095 -31116258 - L1MEd LINE L1 -4703 1576 954 566 298 225 24 chr1 211548227 211548817 -31115536 - L1MEd LINE L1 -5409 710 2 485 338 123 14 chr1 211551672 211551891 -31112462 + MIR SINE MIR 20 262 0 2104 98 0 33 chr1 211552100 211552406 -31111947 + AluSx SINE Alu 1 296 -16 2125 110 0 7 chr1 211552924 211553224 -31111129 - AluSx SINE Alu -14 298 1 1594 191 10 19 chr1 211553880 211554189 -31110164 - AluJb SINE Alu -6 306 1 228 35 0 0 chr1 211554385 211554414 -31109939 + (CA)n Simple_repeat Simple_repeat 2 30 0 455 285 178 15 chr1 211554746 211555016 -31109337 + Charlie2 DNA MER1_type 12 325 -2457 1991 119 3 17 chr1 211555088 211555422 -31108931 - AluSx SINE Alu 0 330 1 754 219 190 18 chr1 211555441 211555720 -31108633 + Charlie2 DNA MER1_type 1964 2290 -572 28 0 0 0 chr1 211555749 211555777 -31108576 + AT_rich Low_complexity Low_complexity 1 28 0 673 237 42 83 chr1 211555777 211556114 -31108239 + Charlie2 DNA MER1_type 2540 2862 0 226 248 38 48 chr1 211556137 211556242 -31108111 - MLT1J LTR MaLR -28 483 380 275 311 44 11 chr1 211556611 211556701 -31107652 - MIR3 SINE MIR -7 201 109 1677 150 0 4 chr1 211556915 211557175 -31107178 - AluSx SINE Alu -53 259 1 27 29 0 0 chr1 211557538 211557572 -31106781 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 211558606 211558627 -31105726 + AT_rich Low_complexity Low_complexity 1 21 0 334 303 83 8 chr1 211558654 211558786 -31105567 - MIR SINE MIR -74 188 47 2412 42 3 29 chr1 211559907 211560218 -31104135 - AluY SINE Alu -8 303 1 2005 114 27 0 chr1 211560218 211560516 -31103837 - AluSg SINE Alu -4 306 1 406 280 101 68 chr1 211560805 211561348 -31103005 - HAL1 LINE L1 -845 1662 1088 2223 103 0 0 chr1 211561348 211561654 -31102699 - AluSx SINE Alu 0 309 4 406 280 101 68 chr1 211561654 211561812 -31102541 - HAL1 LINE L1 -1419 1088 937 237 250 0 0 chr1 211561851 211561903 -31102450 - L2 LINE L2 -5 3308 3257 1951 133 48 0 chr1 211562100 211562394 -31101959 - AluSx SINE Alu -4 308 1 1206 127 6 0 chr1 211562907 211563088 -31101265 + AluSq SINE Alu 132 313 0 1702 136 24 42 chr1 211564327 211564498 -31099855 - AluJo SINE Alu -30 282 116 189 0 0 0 chr1 211564498 211564519 -31099834 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1702 136 24 42 chr1 211564519 211564634 -31099719 - AluJo SINE Alu -196 116 1 186 141 141 42 chr1 211567710 211567781 -31096572 - L3b LINE CR1 -398 1185 1108 1520 207 11 4 chr1 211568822 211569102 -31095251 + AluJo SINE Alu 1 282 -30 189 349 12 24 chr1 211570311 211570394 -31093959 + MER5A DNA MER1_type 108 189 0 1987 150 3 10 chr1 211570863 211571176 -31093177 - AluSx SINE Alu -1 311 1 491 248 31 16 chr1 211571243 211571372 -31092981 + MER104 DNA Tc2 50 180 0 2472 82 0 0 chr1 211571389 211571695 -31092658 - AluSp SINE Alu -7 306 1 228 217 17 50 chr1 211574646 211574706 -31089647 - L3 LINE CR1 -2 1575 1518 2251 112 0 0 chr1 211576988 211577300 -31087053 + AluSx SINE Alu 1 312 0 180 0 0 0 chr1 211578890 211578910 -31085443 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 420 276 111 39 chr1 211578958 211579139 -31085214 + MIR SINE MIR 14 207 -55 31 58 0 0 chr1 211579472 211579524 -31084829 + AT_rich Low_complexity Low_complexity 1 52 0 230 79 0 26 chr1 211579584 211579622 -31084731 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 312 94 0 0 chr1 211580805 211580858 -31083495 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1938 131 7 4 chr1 211580859 211581134 -31083219 - AluSx SINE Alu -32 280 5 241 269 122 46 chr1 211583796 211583910 -31080443 - MIR SINE MIR -60 148 28 354 355 61 5 chr1 211584129 211584319 -31080034 - MIR SINE MIR -46 216 17 12498 99 17 22 chr1 211584370 211586285 -31078068 + L1PA7 LINE L1 2 1926 -4535 20408 82 3 0 chr1 211586301 211589944 -31074409 + L1PA7 LINE L1 2789 6466 -3 357 338 78 0 chr1 211590176 211590380 -31073973 - L1MEd LINE L1 -3890 2239 2020 544 275 90 44 chr1 211590669 211591257 -31073096 - L1MEd LINE L1 -868 1622 954 656 292 227 17 chr1 211591386 211591972 -31072381 - L1MEd LINE L1 -5409 710 2 497 333 123 14 chr1 211594826 211595045 -31069308 + MIR SINE MIR 20 262 0 2283 101 0 19 chr1 211595254 211595562 -31068791 + AluSq SINE Alu 1 302 -11 27 0 0 0 chr1 211598088 211598115 -31066238 + AT_rich Low_complexity Low_complexity 1 27 0 1462 192 61 17 chr1 211598672 211599079 -31065274 + LTR37A LTR ERV1 2 426 0 331 261 72 51 chr1 211599099 211599237 -31065116 + HAL1 LINE L1 425 565 -1942 240 257 86 0 chr1 211599259 211599364 -31064989 + MLT1L LTR MaLR 477 590 -25 23 33 0 0 chr1 211599732 211599762 -31064591 + AT_rich Low_complexity Low_complexity 1 30 0 211 191 48 0 chr1 211601087 211601150 -31063203 + A-rich Low_complexity Low_complexity 2 67 0 264 264 27 40 chr1 211601933 211602081 -31062272 - L1MEd LINE L1 -3842 2287 2142 35 0 0 0 chr1 211602081 211602116 -31062237 + AT_rich Low_complexity Low_complexity 1 35 0 1302 179 71 29 chr1 211602119 211602399 -31061954 - AluJo SINE Alu -10 292 1 669 144 0 18 chr1 211602520 211602631 -31061722 - FLAM_C SINE Alu -9 134 26 1871 144 3 0 chr1 211603004 211603295 -31061058 + AluSq SINE Alu 5 296 -17 510 261 101 46 chr1 211603472 211604043 -31060310 - L1MEd LINE L1 -4610 1519 986 50 42 0 0 chr1 211604871 211604942 -31059411 + AT_rich Low_complexity Low_complexity 1 71 0 199 122 0 49 chr1 211605982 211606023 -31058330 + MIR SINE MIR 41 79 -129 710 259 42 36 chr1 211606032 211606225 -31058128 + MIR SINE MIR 48 241 -21 478 306 229 3 chr1 211606500 211606784 -31057569 + L2 LINE L2 2550 2897 -417 293 260 14 14 chr1 211606882 211606955 -31057398 + L2 LINE L2 3200 3272 0 22 0 0 0 chr1 211607383 211607405 -31056948 + AT_rich Low_complexity Low_complexity 1 22 0 2234 93 0 17 chr1 211607880 211608180 -31056173 + AluSx SINE Alu 1 295 -17 3053 199 37 23 chr1 211609623 211609872 -31054481 - MER82 DNA MER2_type 0 653 409 207 0 0 0 chr1 211609872 211609895 -31054458 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3053 199 37 23 chr1 211609895 211610289 -31054064 - MER82 DNA MER2_type -244 409 1 213 308 131 46 chr1 211612682 211612812 -31051541 - MIR SINE MIR -34 228 88 21 0 0 0 chr1 211613158 211613179 -31051174 + AT_rich Low_complexity Low_complexity 1 21 0 567 266 184 70 chr1 211613186 211613948 -31050405 - HAL1 LINE L1 -4 2503 1655 296 263 66 15 chr1 211614170 211614307 -31050046 - HAL1 LINE L1 -1244 1263 1120 4855 185 24 18 chr1 211614316 211615385 -31048968 - L1MD1 LINE L1 -16 6226 5146 1792 208 7 27 chr1 211615377 211615825 -31048528 - L1MD1 LINE L1 -1236 4910 4472 * 390 224 103 9 chr1 211616021 211616128 -31048225 - HAL1 LINE L1 -1596 911 795 377 316 118 20 chr1 211616520 211616824 -31047529 - L2 LINE L2 -1231 2083 1750 513 278 89 18 chr1 211617315 211617484 -31046869 - MIR SINE MIR -73 189 9 362 337 11 3 chr1 211617977 211618160 -31046193 - MIR SINE MIR -19 243 8 181 353 15 0 chr1 211618246 211618314 -31046039 + L2 LINE L2 3202 3270 -2 289 154 77 0 chr1 211619167 211619219 -31045134 + MER3 DNA MER1_type 35 90 -119 * 743 204 5 81 chr1 211619180 211619245 -31045108 - MER3 DNA MER1_type -5 204 136 1827 124 8 0 chr1 211619245 211619503 -31044850 - AluSx SINE Alu -9 303 44 743 204 5 81 chr1 211619503 211619658 -31044695 - MER3 DNA MER1_type -73 136 1 188 178 0 22 chr1 211620536 211620581 -31043772 + CT-rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 211620596 211620625 -31043728 + AT_rich Low_complexity Low_complexity 1 29 0 1764 143 46 7 chr1 211620626 211620906 -31043447 - AluSg SINE Alu -17 293 3 2985 232 97 22 chr1 211620957 211621201 -31043152 - L1MD3 LINE L1 -2 8037 7813 2202 82 20 7 chr1 211621201 211621493 -31042860 - AluSc SINE Alu -13 296 1 2985 232 97 22 chr1 211621493 211622146 -31042207 - L1MD3 LINE L1 -226 7813 7062 180 77 0 0 chr1 211622146 211622172 -31042181 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2985 232 97 22 chr1 211622172 211622291 -31042062 - L1MD3 LINE L1 -977 7062 6953 1639 78 0 28 chr1 211622450 211622667 -31041686 - AluSq SINE Alu -102 211 1 304 268 93 0 chr1 211622675 211622772 -31041581 - MARNA DNA Mariner -42 544 439 204 40 0 0 chr1 211623027 211623052 -31041301 + (TATG)n Simple_repeat Simple_repeat 3 27 0 284 289 116 64 chr1 211623152 211623325 -31041028 - MIR SINE MIR -3 259 78 1967 156 92 17 chr1 211624243 211624267 -31040086 + MSTB LTR MaLR 1 22 -404 2051 138 57 14 chr1 211624267 211624616 -31039737 - THE1B LTR MaLR 0 364 1 1967 156 92 17 chr1 211624616 211624950 -31039403 + MSTB LTR MaLR 22 386 -40 2270 87 0 0 chr1 211624952 211625239 -31039114 + AluY SINE Alu 1 287 -24 29 0 0 0 chr1 211625241 211625270 -31039083 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr1 211625606 211625644 -31038709 + AT_rich Low_complexity Low_complexity 1 38 0 333 0 0 0 chr1 211625663 211625700 -31038653 + (CA)n Simple_repeat Simple_repeat 2 38 0 36 0 0 0 chr1 211625907 211625943 -31038410 + AT_rich Low_complexity Low_complexity 1 36 0 239 300 17 0 chr1 211626035 211626095 -31038258 - MIR SINE MIR -67 141 81 388 365 32 44 chr1 211626344 211626677 -31037676 + L2 LINE L2 2703 3037 -235 218 331 169 8 chr1 211626771 211626901 -31037452 + L2 LINE L2 3122 3272 0 492 292 92 25 chr1 211627076 211627316 -31037037 + MLT1I LTR MaLR 128 383 -26 21 0 0 0 chr1 211628755 211628776 -31035577 + AT_rich Low_complexity Low_complexity 1 21 0 2215 114 0 0 chr1 211629641 211629938 -31034415 + AluSq SINE Alu 4 300 -13 2198 108 10 16 chr1 211630765 211631070 -31033283 - AluSx SINE Alu -9 303 1 195 176 0 0 chr1 211632362 211632396 -31031957 - L2 LINE L2 -1 3312 3279 1499 158 34 0 chr1 211632885 211633151 -31031202 - L1MB3 LINE L1 -7 6176 5902 2339 91 0 3 chr1 211633373 211633682 -31030671 - AluSg SINE Alu -2 308 1 473 311 55 11 chr1 211633776 211633959 -31030394 - MIR SINE MIR -44 218 28 31 0 0 0 chr1 211634565 211634596 -31029757 + AT_rich Low_complexity Low_complexity 1 31 0 2131 194 42 110 chr1 211636935 211637004 -31027349 + MER92B LTR ERV1 2 74 -562 2205 117 0 0 chr1 211637004 211637312 -31027041 + AluSx SINE Alu 1 308 -4 2131 194 42 110 chr1 211637312 211637914 -31026439 + MER92B LTR ERV1 74 627 -9 182 182 36 0 chr1 211637929 211637984 -31026369 + CT-rich Low_complexity Low_complexity 4 60 0 345 216 0 14 chr1 211640697 211640771 -31023582 - LTR28 LTR ERV1 0 1020 948 1478 249 3 26 chr1 211640810 211641151 -31023202 - LTR28 LTR ERV1 -67 953 621 705 210 80 32 chr1 211641178 211641474 -31022879 - LTR28 LTR ERV1 -661 359 1 670 281 27 28 chr1 211641803 211642034 -31022319 - MIR SINE MIR -21 241 14 22 0 0 0 chr1 211643164 211643186 -31021167 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr1 211643352 211643385 -31020968 + AT_rich Low_complexity Low_complexity 1 33 0 199 333 13 13 chr1 211643632 211643710 -31020643 - L2 LINE L2 -5 3267 3190 2192 119 3 0 chr1 211644358 211644660 -31019693 - AluSx SINE Alu -9 303 1 1506 62 10 5 chr1 211645302 211645494 -31018859 - AluY SINE Alu -15 296 104 231 229 0 21 chr1 211645638 211645686 -31018667 + L2 LINE L2 3210 3256 -16 21 0 0 0 chr1 211646245 211646266 -31018087 + AT_rich Low_complexity Low_complexity 1 21 0 480 255 11 8 chr1 211646451 211646579 -31017774 + MIR SINE MIR 70 196 -62 2137 135 7 0 chr1 211646876 211647180 -31017173 + AluSx SINE Alu 1 306 -6 2285 111 0 0 chr1 211647180 211647487 -31016866 + AluSc SINE Alu 1 307 -2 791 245 103 0 chr1 211648130 211648334 -31016019 + MIR SINE MIR 37 261 -1 1997 75 0 8 chr1 211648639 211648893 -31015460 - AluY SINE Alu -59 252 1 22 35 0 0 chr1 211649290 211649319 -31015034 + AT_rich Low_complexity Low_complexity 1 29 0 289 308 45 32 chr1 211649459 211649615 -31014738 + MIR SINE MIR 81 238 -24 2255 73 17 13 chr1 211649935 211650235 -31014118 + AluSg SINE Alu 1 301 -9 248 345 71 9 chr1 211650254 211650367 -31013986 + MIR3 SINE MIR 85 204 -4 270 403 15 15 chr1 211650505 211650639 -31013714 + L2 LINE L2 3139 3272 0 24 67 0 0 chr1 211650673 211650718 -31013635 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr1 211651083 211651118 -31013235 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 211653111 211653141 -31011212 + AT_rich Low_complexity Low_complexity 1 30 0 201 147 0 0 chr1 211653450 211653484 -31010869 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 626 274 117 89 chr1 211655477 211656006 -31008347 + MLT1K LTR MaLR 44 587 -1 313 324 53 53 chr1 211656417 211656511 -31007842 + MIR SINE MIR 3 96 -166 2509 43 0 7 chr1 211656511 211656812 -31007541 - AluY SINE Alu -12 299 1 313 324 53 53 chr1 211656812 211656961 -31007392 + MIR SINE MIR 95 246 -16 1850 153 10 3 chr1 211657358 211657653 -31006700 + AluSx SINE Alu 3 299 -13 457 338 123 51 chr1 211657725 211658427 -31005926 + L2 LINE L2 1066 1817 -1497 5753 87 19 32 chr1 211659303 211660329 -31004024 + L1PA13 LINE L1 4404 5442 -721 2043 99 0 4 chr1 211660329 211660601 -31003752 + AluSg SINE Alu 1 271 -39 5753 87 19 32 chr1 211660601 211661009 -31003344 + L1PA13 LINE L1 5442 5877 -286 1640 156 135 26 chr1 211661009 211661394 -31002959 + MSTA LTR MaLR 1 427 -1 5753 87 19 32 chr1 211661394 211661666 -31002687 + L1PA13 LINE L1 5877 6151 -12 2057 112 67 20 chr1 211661846 211662204 -31002149 + THE1C LTR MaLR 1 375 0 186 43 0 0 chr1 211662862 211662885 -31001468 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 309 230 236 24 chr1 211663405 211663570 -31000783 + MIR SINE MIR 63 262 0 278 335 46 53 chr1 211663567 211663719 -31000634 - L2 LINE L2 0 3313 3163 * 28 29 0 0 chr1 211664087 211664122 -31000231 + AT_rich Low_complexity Low_complexity 1 35 0 680 235 27 0 chr1 211664601 211664750 -30999603 + MER5A DNA MER1_type 35 187 -2 245 357 87 0 chr1 211664955 211665081 -30999272 - MIR SINE MIR -37 225 89 226 267 0 53 chr1 211670472 211670547 -30993806 - MIR SINE MIR -87 175 105 1176 298 70 16 chr1 211671043 211671660 -30992693 - L1ME3A LINE L1 -223 5947 5298 2235 93 0 13 chr1 211671743 211672044 -30992309 + AluSx SINE Alu 1 297 -15 22 35 0 0 chr1 211672153 211672182 -30992171 + AT_rich Low_complexity Low_complexity 1 29 0 2281 223 140 53 chr1 211672369 211673358 -30990995 + L1MC5 LINE L1 6409 7524 -437 420 37 0 0 chr1 211673358 211673412 -30990941 + (CA)n Simple_repeat Simple_repeat 1 54 0 2281 223 140 53 chr1 211673412 211673646 -30990707 + L1MC5 LINE L1 7524 7736 -225 277 284 55 9 chr1 211673648 211673757 -30990596 + L1MC5 LINE L1 7798 7911 -50 30 0 0 0 chr1 211675946 211675976 -30988377 + AT_rich Low_complexity Low_complexity 1 30 0 2309 86 0 3 chr1 211677145 211677447 -30986906 - AluY SINE Alu -8 303 3 1899 215 69 5 chr1 211677655 211678060 -30986293 + MER70A LTR ERVL 38 468 -4 342 0 0 0 chr1 211678130 211678168 -30986185 + (TG)n Simple_repeat Simple_repeat 2 39 0 2165 100 0 0 chr1 211680023 211680302 -30984051 + AluSg SINE Alu 1 279 -31 23 33 0 0 chr1 211680654 211680684 -30983669 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr1 211680820 211680858 -30983495 + AT_rich Low_complexity Low_complexity 1 38 0 568 259 27 77 chr1 211681449 211681642 -30982711 + L1MEd LINE L1 958 1132 -4987 2312 89 0 3 chr1 211681642 211681944 -30982409 + AluSg SINE Alu 1 301 -9 568 259 27 77 chr1 211681944 211682047 -30982306 + L1MEd LINE L1 1132 1239 -4880 314 292 58 0 chr1 211682180 211682317 -30982036 + HAL1 LINE L1 1500 1644 -863 705 142 50 0 chr1 211682574 211682694 -30981659 + AluSq/x SINE Alu 8 133 -179 1794 176 0 7 chr1 211682902 211683204 -30981149 - AluSx SINE Alu -8 304 5 431 269 156 76 chr1 211683573 211683953 -30980400 - HAL1 LINE L1 -1938 569 134 1602 135 13 64 chr1 211683953 211684265 -30980088 - AluJo SINE Alu -16 296 1 431 269 156 76 chr1 211684265 211684411 -30979942 - HAL1 LINE L1 -2373 134 1 25 31 0 0 chr1 211684429 211684461 -30979892 + AT_rich Low_complexity Low_complexity 1 32 0 757 258 6 6 chr1 211684733 211684911 -30979442 - MIR SINE MIR -1 261 84 21 57 0 0 chr1 211684984 211685019 -30979334 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 211685369 211685391 -30978962 + AT_rich Low_complexity Low_complexity 1 22 0 2157 125 7 0 chr1 211685512 211685817 -30978536 + AluSq SINE Alu 1 307 -6 25 51 0 0 chr1 211686065 211686104 -30978249 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr1 211686944 211686981 -30977372 + AT_rich Low_complexity Low_complexity 1 37 0 335 356 75 0 chr1 211688408 211688554 -30975799 - MIR SINE MIR -15 247 91 296 244 70 0 chr1 211689177 211689263 -30975090 + MIR SINE MIR 100 191 -71 22 0 0 0 chr1 211690062 211690084 -30974269 + AT_rich Low_complexity Low_complexity 1 22 0 321 290 99 79 chr1 211690088 211690554 -30973799 + HAL1 LINE L1 1072 1546 -961 234 278 33 33 chr1 211690613 211690703 -30973650 + HAL1 LINE L1 1621 1710 -797 24 32 0 0 chr1 211690798 211690829 -30973524 + AT_rich Low_complexity Low_complexity 1 31 0 2437 206 97 7 chr1 211691233 211691820 -30972533 - L1MC4 LINE L1 -162 7880 7241 1720 196 152 30 chr1 211691823 211692031 -30972322 - L1MC4 LINE L1 -957 7085 6904 1756 153 26 62 chr1 211692031 211692418 -30971935 + THE1C LTR MaLR 1 373 -2 1720 196 152 30 chr1 211692418 211692769 -30971584 - L1MC4 LINE L1 -1138 6904 6458 180 0 0 0 chr1 211693231 211693251 -30971102 + (TA)n Simple_repeat Simple_repeat 1 20 0 2155 110 7 0 chr1 211693252 211693543 -30970810 - AluSx SINE Alu -19 293 1 210 181 28 56 chr1 211696021 211696093 -30968260 + T-rich Low_complexity Low_complexity 1 70 0 2240 98 3 0 chr1 211696131 211696448 -30967905 + AluSg SINE Alu 1 318 0 706 270 14 38 chr1 211696448 211696659 -30967694 + MIR SINE MIR 27 232 -30 314 325 49 59 chr1 211696971 211697174 -30967179 - L2 LINE L2 -56 3216 3016 2179 98 3 0 chr1 211697242 211697529 -30966824 - AluSx SINE Alu -14 298 11 2096 130 0 0 chr1 211698713 211699012 -30965341 + AluSx SINE Alu 1 299 -13 2044 108 16 3 chr1 211699444 211699750 -30964603 - AluSp SINE Alu -1 312 3 180 253 27 67 chr1 211699765 211699840 -30964513 - L2 LINE L2 -534 2780 2709 2197 102 0 22 chr1 211699916 211700231 -30964122 - AluSx SINE Alu -4 308 1 198 261 22 0 chr1 211701301 211701347 -30963006 - MIR SINE MIR -1 261 215 * 200 189 0 54 chr1 211701313 211701350 -30963003 - L2 LINE L2 -19 3253 3219 267 321 94 9 chr1 211701544 211701650 -30962703 + L2 LINE L2 3199 3313 0 2170 111 0 7 chr1 211701744 211702041 -30962312 - AluSx SINE Alu -17 295 1 212 364 0 0 chr1 211702183 211702249 -30962104 - L2 LINE L2 -8 3264 3199 496 290 53 24 chr1 211702332 211702501 -30961852 + MIR SINE MIR 86 259 -3 999 124 41 0 chr1 211703125 211703270 -30961083 + AluSg/x SINE Alu 147 297 -15 1953 129 7 0 chr1 211703654 211703962 -30960391 + AluSx SINE Alu 1 310 0 1764 144 65 0 chr1 211705386 211705663 -30958690 + AluJb SINE Alu 1 295 -17 256 279 163 60 chr1 211705754 211705969 -30958384 - MIR SINE MIR 0 262 26 2855 207 21 30 chr1 211706011 211706669 -30957684 - MER82 DNA MER2_type 0 653 2 592 158 10 148 chr1 211710058 211710254 -30954099 + MER53 DNA DNA 19 187 -2 1836 182 0 3 chr1 211710808 211711121 -30953232 + AluJo SINE Alu 1 312 0 413 246 188 40 chr1 211711661 211711885 -30952468 + MIR SINE MIR 6 262 0 210 167 0 0 chr1 211711929 211711965 -30952388 + T-rich Low_complexity Low_complexity 5 40 0 27 0 0 0 chr1 211712268 211712295 -30952058 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr1 211713685 211713719 -30950634 + AT_rich Low_complexity Low_complexity 1 34 0 384 192 26 0 chr1 211714521 211714599 -30949754 - MER46C DNA MER2_type 0 338 259 208 263 40 53 chr1 211714800 211714876 -30949477 + L2 LINE L2 2633 2707 -607 915 197 56 56 chr1 211714876 211715145 -30949208 + L1MC3 LINE L1 7508 7776 -9 214 300 15 62 chr1 211716163 211716293 -30948060 + L2 LINE L2 2932 3055 -217 1353 189 58 4 chr1 211717078 211717353 -30947000 - AluSx SINE Alu -22 290 1 1826 129 4 11 chr1 211717551 211717822 -30946531 + AluSx SINE Alu 28 296 -16 36 40 0 0 chr1 211718513 211718563 -30945790 + AT_rich Low_complexity Low_complexity 1 50 0 189 200 200 86 chr1 211720103 211720208 -30944145 + MER5B DNA MER1_type 45 161 -17 823 222 116 0 chr1 211720310 211720508 -30943845 - MER58A DNA MER1_type 0 224 4 580 218 188 35 chr1 211720685 211720887 -30943466 - MIR SINE MIR -8 254 22 2223 98 10 3 chr1 211721385 211721680 -30942673 - AluSx SINE Alu -15 297 1 2290 109 0 0 chr1 211722458 211722771 -30941582 + AluSq SINE Alu 1 313 0 1843 136 11 4 chr1 211723074 211723354 -30940999 + AluSx SINE Alu 1 282 -30 2035 125 10 3 chr1 211724540 211724829 -30939524 + AluSx SINE Alu 1 291 -21 267 306 96 51 chr1 211725853 211726010 -30938343 + MIR SINE MIR 21 184 -78 311 245 168 28 chr1 211727798 211727941 -30936412 + MIR SINE MIR 84 246 -16 453 269 32 45 chr1 211728446 211728603 -30935750 + L1ME2 LINE L1 6017 6333 -1 2084 119 3 0 chr1 211730740 211731034 -30933319 + AluSx SINE Alu 2 296 -16 247 303 123 57 chr1 211731425 211731547 -30932806 + L2 LINE L2 3134 3263 -9 2017 131 0 0 chr1 211731753 211732073 -30932280 + AluSx SINE Alu 1 320 0 369 164 28 7 chr1 211732287 211732371 -30931982 + AluS SINE Alu 1 73 -229 4245 120 17 49 chr1 211732991 211733705 -30930648 - LTR8 LTR ERV1 0 691 1 342 0 0 0 chr1 211733732 211733770 -30930583 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1974 133 52 72 chr1 211734011 211734256 -30930097 - MER4B LTR ERV1 -1 609 374 2062 116 0 0 chr1 211734256 211734532 -30929821 + AluSx SINE Alu 1 276 -36 1974 133 52 72 chr1 211734532 211734686 -30929667 - MER4B LTR ERV1 -236 374 218 1941 105 11 0 chr1 211734688 211734955 -30929398 + AluSg SINE Alu 2 271 -39 1678 147 41 24 chr1 211735058 211735351 -30929002 - AluJo SINE Alu -11 301 4 258 79 0 0 chr1 211735353 211735391 -30928962 - L1MCa LINE L1 -4105 2321 2284 2214 76 0 57 chr1 211735391 211735707 -30928646 - AluSg SINE Alu -12 298 1 266 286 138 32 chr1 211736179 211736368 -30927985 - L2 LINE L2 -559 2755 2547 22 0 0 0 chr1 211737609 211737631 -30926722 + AT_rich Low_complexity Low_complexity 1 22 0 673 124 47 8 chr1 211738227 211738356 -30925997 + L1MA5 LINE L1 6162 6295 -5 374 327 84 19 chr1 211739203 211739417 -30924936 + L2 LINE L2 2847 3074 -198 25 0 0 0 chr1 211739853 211739878 -30924475 + AT_rich Low_complexity Low_complexity 1 25 0 197 256 26 26 chr1 211739972 211740050 -30924303 + MIR SINE MIR 160 237 -25 216 0 0 0 chr1 211740544 211740568 -30923785 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2129 128 0 0 chr1 211740572 211740861 -30923492 - AluSx SINE Alu -23 289 1 212 311 58 48 chr1 211742681 211742887 -30921466 + L2 LINE L2 2848 3055 -217 2032 108 14 10 chr1 211743454 211743750 -30920603 - AluSx SINE Alu -15 297 1 352 222 9 65 chr1 211744075 211744183 -30920170 + MER102a DNA MER1_type 229 330 0 351 283 54 0 chr1 211744250 211744342 -30920011 - MIR SINE MIR -107 155 59 246 181 12 24 chr1 211744624 211744707 -30919646 + (TA)n Simple_repeat Simple_repeat 2 83 0 1938 117 32 0 chr1 211794741 211795050 -30869303 + Tigger7 DNA MER2_type 237 555 -1932 361 169 156 13 chr1 211795047 211795124 -30869229 + Tigger7 DNA MER2_type 2403 2490 -1 * 1384 177 148 13 chr1 211795132 211795511 -30868842 - L1MD3 LINE L1 -155 7840 7411 378 211 89 0 chr1 211795511 211795601 -30868752 - MLT1F1 LTR MaLR -433 134 37 381 181 103 26 chr1 211795604 211795759 -30868594 - L1MD3 LINE L1 -877 7118 6952 3700 141 61 79 chr1 211795944 211796849 -30867504 + MER4D LTR ERV1 1 648 -16 1450 193 0 11 chr1 211796849 211797119 -30867234 + AluJb SINE Alu 1 267 -45 186 118 0 0 chr1 211797697 211797731 -30866622 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 21 82 0 0 chr1 211798434 211798483 -30865870 + AT_rich Low_complexity Low_complexity 1 49 0 249 305 0 19 chr1 211798891 211798996 -30865357 + (CATATA)n Simple_repeat Simple_repeat 4 106 0 214 382 69 20 chr1 211799757 211799859 -30864494 - L2 LINE L2 -18 3254 3148 386 122 0 111 chr1 211800754 211800844 -30863509 - L1PA10 LINE L1 0 6168 6089 1388 187 74 25 chr1 211801140 211801424 -30862929 + AluSx SINE Alu 1 298 -14 2014 144 3 7 chr1 211801424 211801723 -30862630 + AluSx SINE Alu 1 298 -14 426 316 80 30 chr1 211801737 211801974 -30862379 + MIR SINE MIR 13 261 -1 216 200 0 0 chr1 211803374 211803419 -30860934 + (TA)n Simple_repeat Simple_repeat 2 46 0 674 136 98 8 chr1 211803913 211804045 -30860308 - L1MD3 LINE L1 -10 7985 7842 572 198 0 0 chr1 211804045 211804141 -30860212 + Tigger7 DNA MER2_type 1 96 -2391 5774 148 25 17 chr1 211804241 211804445 -30859908 + L1MA9 LINE L1 4441 4642 -1670 2061 139 7 0 chr1 211804445 211804755 -30859598 + AluSx SINE Alu 1 312 0 5774 148 25 17 chr1 211804755 211806374 -30857979 + L1MA9 LINE L1 4642 6279 -33 992 120 0 0 chr1 211806372 211806522 -30857831 + L1M2 LINE L1 5363 5512 -800 * 423 167 12 12 chr1 211806513 211806597 -30857756 + L1 LINE L1 4507 4590 -1556 * 237 50 0 75 chr1 211806603 211806643 -30857710 + L1MA9 LINE L1 6275 6311 -1 1321 234 28 7 chr1 211806661 211806952 -30857401 - MLT-int LTR MaLR -129 1606 1310 250 274 12 0 chr1 211807112 211807196 -30857157 - MLT-int LTR MaLR -965 770 686 276 250 48 12 chr1 211807289 211807373 -30856980 - MLT1-int LTR MaLR -628 743 657 380 203 23 94 chr1 211807489 211807617 -30856736 - MLT1A2 LTR MaLR -255 119 1 267 45 0 68 chr1 211807648 211807692 -30856661 + L1MA9 LINE L1 6072 6112 -200 2235 141 8 35 chr1 211807730 211808128 -30856225 + L1PA16 LINE L1 5764 6150 -16 482 251 61 58 chr1 211808566 211808861 -30855492 - MER34B LTR ERV1 0 565 270 257 297 132 0 chr1 211808945 211809036 -30855317 - MER34B LTR ERV1 -458 107 5 288 0 0 0 chr1 211809056 211809088 -30855265 + (CA)n Simple_repeat Simple_repeat 2 33 0 1746 144 15 0 chr1 211809188 211809452 -30854901 - AluSg SINE Alu -40 270 3 211 169 0 34 chr1 211809547 211809606 -30854747 + CT-rich Low_complexity Low_complexity 3 59 0 1176 149 0 0 chr1 211809662 211809837 -30854516 + AluSg/x SINE Alu 126 300 -12 2346 86 0 10 chr1 211810696 211810999 -30853354 + AluSc SINE Alu 1 300 -9 2355 158 34 34 chr1 211811473 211811916 -30852437 - MSTB2 LTR MaLR 0 457 15 23 0 0 0 chr1 211812418 211812441 -30851912 + AT_rich Low_complexity Low_complexity 1 23 0 4015 186 28 52 chr1 211812443 211812616 -30851737 + L1MA9 LINE L1 4457 4633 -1679 4714 78 11 11 chr1 211812616 211813253 -30851100 + L1PA10 LINE L1 5509 6161 -7 4015 186 28 52 chr1 211813253 211814553 -30849800 + L1MA9 LINE L1 4633 5872 -440 2413 94 0 0 chr1 211814553 211814862 -30849491 + AluSx SINE Alu 1 309 -3 4015 186 28 52 chr1 211814862 211815256 -30849097 + L1MA9 LINE L1 5872 6274 -38 24 67 0 0 chr1 211815256 211815301 -30849052 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 211816131 211816153 -30848200 + AT_rich Low_complexity Low_complexity 1 22 0 180 286 0 16 chr1 211816568 211816631 -30847722 + L2 LINE L2 2337 2398 -916 1816 177 0 3 chr1 211817868 211818167 -30846186 + AluJb SINE Alu 1 298 -14 6664 124 76 8 chr1 211819255 211820402 -30843951 + Tigger3b DNA MER2_type 3 1227 -4 3087 143 50 29 chr1 211820872 211821430 -30842923 + LTR8A LTR ERV1 158 727 0 1119 157 91 22 chr1 211823106 211823380 -30840973 + MER33 DNA MER1_type 32 324 0 26 50 0 0 chr1 211823654 211823694 -30840659 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 211824149 211824177 -30840176 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 211824735 211824758 -30839595 + AT_rich Low_complexity Low_complexity 1 23 0 199 232 0 58 chr1 211825523 211825592 -30838761 - MIR SINE MIR -50 212 148 1923 144 0 3 chr1 211825751 211826042 -30838311 + AluJb SINE Alu 13 302 -10 248 267 0 13 chr1 211826090 211826165 -30838188 + (TA)n Simple_repeat Simple_repeat 2 75 0 503 186 0 12 chr1 211826806 211826892 -30837461 + AluJ/FLAM SINE Alu 3 87 -225 219 183 42 14 chr1 211826986 211827057 -30837296 + (TA)n Simple_repeat Simple_repeat 1 73 0 2529 253 127 19 chr1 211827104 211828422 -30835931 - L1M4 LINE L1 -2096 4050 2591 753 138 16 16 chr1 211828500 211828623 -30835730 + FLAM_C SINE Alu 3 125 -18 529 244 48 67 chr1 211828712 211828764 -30835589 + MLT1J LTR MaLR 1 52 -459 1004 216 28 5 chr1 211828764 211828982 -30835371 - MER58A DNA MER1_type 0 224 2 529 244 48 67 chr1 211828982 211829138 -30835215 + MLT1J LTR MaLR 52 205 -306 417 226 128 0 chr1 211829219 211829321 -30835032 - LTR40b LTR ERVL -40 422 308 213 139 0 0 chr1 211829644 211829680 -30834673 + L2 LINE L2 3269 3304 -9 566 288 98 53 chr1 211829732 211830221 -30834132 - HAL1 LINE L1 -1410 1097 587 709 282 44 52 chr1 211830348 211830713 -30833640 - HAL1 LINE L1 -2098 409 48 281 317 219 29 chr1 211830885 211831090 -30833263 - MIR SINE MIR -7 255 12 297 344 128 0 chr1 211831279 211831459 -30832894 - MIR SINE MIR -55 207 5 1224 238 55 39 chr1 211832203 211832586 -30831767 - MLT1B LTR MaLR 0 390 2 410 225 45 0 chr1 211832587 211832698 -30831655 - MLT1B-int LTR MaLR 0 1735 1620 1467 115 22 52 chr1 211832712 211832736 -30831617 + L1 LINE L1 4075 4098 -2048 2080 125 0 0 chr1 211832736 211833033 -30831320 - AluY SINE Alu -14 297 1 1467 115 22 52 chr1 211833033 211833278 -30831075 + L1 LINE L1 4098 4336 -1810 318 278 221 38 chr1 211833493 211833756 -30830597 + MLT1J LTR MaLR 201 511 0 31 58 0 0 chr1 211836180 211836232 -30828121 + AT_rich Low_complexity Low_complexity 1 52 0 1449 187 26 15 chr1 211836807 211837075 -30827278 + AluJb SINE Alu 21 291 -21 591 259 216 29 chr1 211837177 211837594 -30826759 - HAL1 LINE L1 -1 2506 2012 1160 289 39 34 chr1 211837749 211838340 -30826013 - HAL1 LINE L1 -1185 1322 729 308 308 177 23 chr1 211838572 211838916 -30825437 - HAL1 LINE L1 -1843 664 268 214 311 38 38 chr1 211839962 211840068 -30824285 - L2 LINE L2 -176 3096 2991 181 204 0 23 chr1 211840067 211840111 -30824242 + L2 LINE L2 3271 3313 0 * 185 122 49 0 chr1 211842105 211842146 -30822207 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1807 173 0 7 chr1 211842875 211843175 -30821178 + AluJo SINE Alu 3 300 -12 1921 193 15 35 chr1 211843840 211844239 -30820114 + MLT2C1 LTR ERVL 1 391 -6 311 280 74 11 chr1 211844441 211844616 -30819737 - L1M4 LINE L1 -1563 5285 5100 22 0 0 0 chr1 211844641 211844663 -30819690 + AT_rich Low_complexity Low_complexity 1 22 0 363 314 37 11 chr1 211845028 211845219 -30819134 - L1M4 LINE L1 -2208 4640 4445 2267 143 16 8 chr1 211845514 211845886 -30818467 + THE1C LTR MaLR 1 375 0 1676 135 39 55 chr1 211846626 211846938 -30817415 - MER7A DNA MER2_type 0 346 42 400 282 40 123 chr1 211846984 211847456 -30816897 - HAL1 LINE L1 -1151 1356 924 259 200 73 0 chr1 211848194 211848249 -30816104 - L2 LINE L2 -1 3271 3213 1321 353 79 40 chr1 211848414 211849108 -30815245 - L2 LINE L2 -421 2893 2133 1862 168 87 39 chr1 211849108 211849543 -30814810 - MSTB2 LTR MaLR 0 457 2 1321 353 79 40 chr1 211849543 211850010 -30814343 - L2 LINE L2 -1181 2133 1686 564 274 62 67 chr1 211850170 211850219 -30814134 - L1MC/D LINE L1 -460 5644 5596 714 216 116 20 chr1 211850219 211850418 -30813935 + MER20 DNA MER1_type 2 219 0 564 274 62 67 chr1 211850418 211850737 -30813616 - L1MC/D LINE L1 -508 5596 5266 498 280 86 84 chr1 211850768 211851758 -30812595 - L1MEd LINE L1 -4862 1257 297 2177 186 32 44 chr1 211851933 211852513 -30811840 - L1M4 LINE L1 -3512 3336 2760 212 259 19 28 chr1 211852530 211852638 -30811715 + T-rich Low_complexity Low_complexity 2 108 0 222 246 0 15 chr1 211852939 211853004 -30811349 + (TA)n Simple_repeat Simple_repeat 2 65 0 266 289 56 46 chr1 211853190 211853471 -30810882 - L1ME LINE L1 -320 5842 5565 665 306 69 32 chr1 211853642 211853795 -30810558 - L1ME LINE L1 -1680 4466 4320 903 222 98 69 chr1 211853795 211854174 -30810179 - MLT1B LTR MaLR 0 390 1 665 306 69 32 chr1 211854174 211854396 -30809957 - L1ME LINE L1 -1826 4320 4077 246 359 123 0 chr1 211854510 211854616 -30809737 + MIR SINE MIR 2 120 -142 518 191 0 0 chr1 211854720 211854814 -30809539 + AluJ/FRAM SINE Alu 217 310 -2 1020 156 123 19 chr1 211854858 211855069 -30809284 + MER44D DNA MER2_type 1 503 -106 1482 129 163 117 chr1 211855072 211855369 -30808984 - MER4A LTR ERV1 0 664 343 2208 106 17 0 chr1 211855369 211855670 -30808683 - AluSp SINE Alu -6 307 2 1482 129 163 117 chr1 211855670 211855758 -30808595 - MER4A LTR ERV1 -321 343 261 532 167 21 10 chr1 211855758 211855854 -30808499 - MER4A LTR ERV1 -566 98 2 1966 128 33 82 chr1 211855856 211856222 -30808131 + MER7A DNA MER2_type 1 346 0 411 258 10 0 chr1 211856233 211856330 -30808023 + MER44D DNA MER2_type 608 705 0 323 354 9 9 chr1 211856333 211856446 -30807907 - MIR SINE MIR -62 146 34 2343 88 7 3 chr1 211856649 211856954 -30807399 + AluSq SINE Alu 1 306 -7 2793 211 53 8 chr1 211858082 211858707 -30805646 - MER82 DNA MER2_type 0 653 1 252 140 40 20 chr1 211858765 211858815 -30805538 + L2 LINE L2 3263 3313 0 2011 190 40 57 chr1 211859258 211859764 -30804589 + MLT1D LTR MaLR 3 499 -6 961 216 62 83 chr1 211860132 211860698 -30803655 + MLT1E3 LTR MaLR 1 497 -8 2048 128 7 0 chr1 211860850 211861158 -30803195 + AluSx SINE Alu 1 310 0 475 252 52 0 chr1 211865983 211866118 -30798235 - MIR SINE MIR -36 226 85 2273 93 3 0 chr1 211866344 211866645 -30797708 + AluSq SINE Alu 1 302 -11 1866 143 52 36 chr1 211866661 211867025 -30797328 + THE1C LTR MaLR 6 375 0 286 314 119 80 chr1 211867128 211867348 -30797005 + LTR33 LTR ERVL 45 255 -266 2562 11 0 0 chr1 211867348 211867626 -30796727 - AluYb8 SINE Alu -9 309 32 286 314 119 80 chr1 211867626 211867858 -30796495 + LTR33 LTR ERVL 255 515 -6 565 241 92 45 chr1 211868066 211868242 -30796111 - MIR SINE MIR -51 211 33 986 233 11 50 chr1 211868395 211868657 -30795696 + L2 LINE L2 2272 2523 -791 1617 216 51 25 chr1 211868735 211869128 -30795225 + MLT1C LTR MaLR 6 408 -59 261 0 0 0 chr1 211869129 211869158 -30795195 + (TTA)n Simple_repeat Simple_repeat 2 30 0 961 132 0 0 chr1 211869158 211869287 -30795066 - AluSq/x SINE Alu -184 129 1 252 209 0 30 chr1 211869288 211869355 -30794998 + MLT1D LTR MaLR 326 505 0 195 260 0 0 chr1 211869360 211869410 -30794943 + L2 LINE L2 2525 2574 -740 935 254 80 20 chr1 211869958 211870257 -30794096 + L2 LINE L2 2997 3313 0 1533 234 65 0 chr1 211870718 211871051 -30793302 + MER82 DNA MER2_type 1 355 -298 2842 88 11 0 chr1 211871051 211871428 -30792925 - MER57B LTR ERV1 0 434 54 511 204 11 0 chr1 211871418 211871511 -30792842 + MER82 DNA MER2_type 554 647 -6 * 230 293 53 13 chr1 211871647 211871722 -30792631 - L2 LINE L2 -33 3239 3162 362 230 0 46 chr1 211872041 211872128 -30792225 - L2 LINE L2 -2 3311 3229 2226 108 0 0 chr1 211872876 211873171 -30791182 - AluSc SINE Alu -14 295 1 735 263 99 5 chr1 211873388 211873615 -30790738 - MIR SINE MIR -3 259 13 229 295 90 0 chr1 211875058 211875136 -30789217 + L2 LINE L2 3187 3271 -1 320 136 61 15 chr1 211875193 211875259 -30789094 + Charlie7 DNA MER1_type 37 105 -2507 221 164 273 0 chr1 211875550 211875605 -30788748 - MIR SINE MIR -70 192 123 484 238 102 0 chr1 211875605 211875752 -30788601 - L1MEc LINE L1 -2509 3706 3545 759 136 56 0 chr1 211875760 211875885 -30788468 + FLAM_A SINE Alu 1 132 -1 2301 104 3 3 chr1 211875894 211876203 -30788150 + AluSg SINE Alu 1 309 -1 444 241 36 0 chr1 211876204 211876517 -30787836 + (TA)n Simple_repeat Simple_repeat 1 324 0 1537 203 8 0 chr1 211876586 211876852 -30787501 - AluJo SINE Alu -44 268 1 4016 252 74 7 chr1 211876859 211878511 -30785842 - L1MEc LINE L1 -2806 3409 1687 2280 224 89 31 chr1 211878511 211879193 -30785160 - Zaphod DNA AcHobo -3280 751 30 2119 112 6 29 chr1 211880262 211880576 -30783777 - AluSx SINE Alu -5 307 1 263 276 113 43 chr1 211881404 211881661 -30782692 + L1ME4a LINE L1 5690 5964 -157 210 300 22 11 chr1 211881661 211881751 -30782602 + (TA)n Simple_repeat Simple_repeat 1 91 0 269 178 0 78 chr1 211881753 211881843 -30782510 + L1ME4a LINE L1 5990 6072 -49 24 53 0 0 chr1 211883303 211883341 -30781012 + AT_rich Low_complexity Low_complexity 1 38 0 1377 144 4 26 chr1 211883594 211883823 -30780530 - AluJo SINE Alu -2 310 87 868 193 111 29 chr1 211885111 211885453 -30778900 + L1MC5 LINE L1 7406 7775 -186 367 200 13 0 chr1 211885475 211885550 -30778803 - Tigger5 DNA MER2_type 0 2323 2248 279 323 21 0 chr1 211885842 211885938 -30778415 + L2 LINE L2 3182 3279 -34 360 64 0 0 chr1 211888026 211888073 -30776280 + (TG)n Simple_repeat Simple_repeat 2 48 0 481 283 78 64 chr1 211889241 211889598 -30774755 + L1ME3A LINE L1 5794 6155 -15 181 279 147 0 chr1 211889681 211889749 -30774604 - MIR SINE MIR -127 135 58 469 325 190 13 chr1 211891146 211891457 -30772896 - L3 LINE CR1 -33 1544 1179 428 226 87 0 chr1 211891494 211891609 -30772744 - MER117 DNA MER1_type -72 125 1 1011 75 14 20 chr1 211892552 211892699 -30771654 + L1PA10 LINE L1 6019 6164 -4 283 373 27 14 chr1 211892973 211893193 -30771160 - L2 LINE L2 -934 2380 2158 1763 206 120 80 chr1 211894749 211895347 -30769006 + MLT1E2 LTR MaLR 1 624 -2 1568 205 72 168 chr1 211896557 211897404 -30766949 - LTR41 LTR ERVL -5 768 3 212 0 36 0 chr1 211897449 211897477 -30766876 + (TTG)n Simple_repeat Simple_repeat 2 30 0 217 159 23 0 chr1 211898188 211898232 -30766121 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 2441 179 57 105 chr1 211898714 211899344 -30765009 - MER77 LTR ERV1 0 605 6 394 251 80 46 chr1 211899776 211899951 -30764402 + L3b LINE CR1 1317 1497 -86 442 229 179 21 chr1 211900858 211900998 -30763355 + MER5A DNA MER1_type 28 189 0 826 226 43 0 chr1 211901002 211901188 -30763165 + MER58A DNA MER1_type 30 223 -1 675 257 86 32 chr1 211902625 211902750 -30761603 - L2 LINE L2 0 3313 3196 189 0 0 0 chr1 211902750 211902771 -30761582 + (GA)n Simple_repeat Simple_repeat 2 22 0 675 257 86 32 chr1 211902771 211902925 -30761428 - L2 LINE L2 -117 3196 3019 1557 139 191 10 chr1 211904096 211904405 -30759948 + MER47A DNA MER2_type 2 366 0 649 248 21 0 chr1 211904528 211904673 -30759680 - MER82 DNA MER2_type -29 624 477 265 370 25 8 chr1 211904754 211904873 -30759480 + MIR SINE MIR 31 151 -111 1598 146 0 8 chr1 211904970 211905224 -30759129 - AluSg SINE Alu -58 252 1 497 216 0 0 chr1 211905234 211905331 -30759022 - MER82 DNA MER2_type -556 97 1 3572 232 40 34 chr1 211905430 211906631 -30757722 + L1MC3 LINE L1 5295 6502 -1283 246 62 0 0 chr1 211908287 211908319 -30756034 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 191 344 0 0 chr1 211909573 211909634 -30754719 - MIR SINE MIR -104 158 98 1802 191 92 12 chr1 211910235 211910639 -30753714 + MLT1C LTR MaLR 22 457 -10 312 279 47 0 chr1 211911156 211911242 -30753111 + MIR SINE MIR 65 154 -108 291 226 48 0 chr1 211911296 211911358 -30752995 - MIR SINE MIR -58 150 86 187 298 0 21 chr1 211911920 211911967 -30752386 - MIR SINE MIR -163 99 54 201 274 59 69 chr1 211912004 211912106 -30752247 - L2 LINE L2 -34 3279 3179 206 314 186 0 chr1 211912174 211912298 -30752055 - L2 LINE L2 -4 3268 3122 277 276 31 79 chr1 211912309 211912436 -30751917 - L2 LINE L2 -15 3257 3137 531 272 80 66 chr1 211913011 211913224 -30751129 + MIR SINE MIR 1 216 -46 277 121 0 52 chr1 211913422 211913480 -30750873 - MLT1K LTR MaLR -83 505 451 2112 122 0 10 chr1 211916678 211916973 -30747380 + AluSq SINE Alu 1 292 -21 271 303 156 33 chr1 211918391 211918513 -30745840 - MIR SINE MIR -105 157 21 24 67 0 0 chr1 211918718 211918763 -30745590 + AT_rich Low_complexity Low_complexity 1 45 0 240 35 0 0 chr1 211919040 211919069 -30745284 + (A)n Simple_repeat Simple_repeat 1 29 0 32 0 0 0 chr1 211920338 211920370 -30743983 + AT_rich Low_complexity Low_complexity 1 32 0 37 76 0 0 chr1 211920598 211920677 -30743676 + AT_rich Low_complexity Low_complexity 1 79 0 2270 121 0 0 chr1 211923009 211923316 -30741037 - AluSc SINE Alu -2 307 1 242 347 47 18 chr1 211924058 211924228 -30740125 - MIR SINE MIR -10 252 78 2164 171 49 24 chr1 211925107 211925557 -30738796 + MLT1C LTR MaLR 3 463 -4 1873 144 3 41 chr1 211925746 211926065 -30738288 + AluJb SINE Alu 1 307 -5 2163 111 53 3 chr1 211926346 211926725 -30737628 + L1MA8 LINE L1 5889 6286 -5 459 0 0 0 chr1 211926943 211926994 -30737359 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2293 118 0 0 chr1 211927264 211927568 -30736785 - AluSx SINE Alu -8 304 1 369 0 0 0 chr1 211929906 211929947 -30734406 + (CA)n Simple_repeat Simple_repeat 1 41 0 1229 224 32 22 chr1 211930897 211931267 -30733086 + L1ME1 LINE L1 5776 6149 -17 1682 267 122 38 chr1 211931354 211932398 -30731955 - L2 LINE L2 0 3313 2165 29 28 0 0 chr1 211932917 211932953 -30731400 + AT_rich Low_complexity Low_complexity 1 36 0 1083 118 12 161 chr1 211933366 211933620 -30730733 + AluSx SINE Alu 9 224 -88 1995 99 3 27 chr1 211933975 211934294 -30730059 - AluSp SINE Alu 0 316 5 2525 157 105 126 chr1 211937132 211937368 -30726985 + L1MC3 LINE L1 6858 7097 -688 232 270 0 14 chr1 211937368 211937442 -30726911 + MLT1F1 LTR MaLR 39 111 -456 2525 157 105 126 chr1 211937442 211938071 -30726282 + L1MC3 LINE L1 7097 7777 -8 22 35 0 0 chr1 211938210 211938239 -30726114 + AT_rich Low_complexity Low_complexity 1 29 0 37 23 0 0 chr1 211938410 211938454 -30725899 + AT_rich Low_complexity Low_complexity 1 44 0 1679 164 10 31 chr1 211939060 211939352 -30725001 + AluJb SINE Alu 1 286 -26 240 163 0 0 chr1 211939439 211939482 -30724871 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2167 113 30 0 chr1 211939993 211940293 -30724060 - AluSx SINE Alu -1 311 3 2232 90 0 4 chr1 211941242 211941541 -30722812 - AluY SINE Alu 0 300 3 180 0 0 0 chr1 211941560 211941580 -30722773 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2295 114 0 0 chr1 211942149 211942447 -30721906 + AluSx SINE Alu 1 298 -14 771 245 20 5 chr1 211942879 211943075 -30721278 + MLT1E LTR MaLR 1 199 -394 709 284 101 9 chr1 211944210 211944428 -30719925 + MIR SINE MIR 15 252 -10 228 278 56 11 chr1 211944437 211944527 -30719826 - HsTC2 DNA Tc2 -1802 96 3 7265 198 65 64 chr1 211944994 211945990 -30718363 + L1MC1 LINE L1 4 997 -5429 1800 155 30 3 chr1 211945990 211946293 -30718060 - AluSx SINE Alu -1 311 1 7265 198 65 64 chr1 211946293 211946747 -30717606 + L1MC1 LINE L1 997 1449 -4977 2351 70 13 7 chr1 211946747 211947049 -30717304 + AluY SINE Alu 1 304 -7 7265 198 65 64 chr1 211947049 211948229 -30716124 + L1MC1 LINE L1 1449 2626 -3800 1444 179 159 3 chr1 211948229 211948530 -30715823 + MER7A DNA MER2_type 1 346 0 7265 198 65 64 chr1 211948530 211949775 -30714578 + L1MC1 LINE L1 2626 3868 -2558 1755 124 80 44 chr1 211949775 211950137 -30714216 + THE1C LTR MaLR 1 375 0 7265 198 65 64 chr1 211950137 211950544 -30713809 + L1MC1 LINE L1 3868 4273 -2153 2184 103 20 3 chr1 211950544 211950836 -30713517 + AluSx SINE Alu 3 299 -13 7265 198 65 64 chr1 211950836 211951343 -30713010 + L1MC1 LINE L1 4273 4794 -1632 1875 133 6 3 chr1 211951343 211951660 -30712693 + L1MC1 LINE L1 5791 6108 -505 3803 199 38 33 chr1 211951682 211951782 -30712571 + MER21B LTR ERV1 1 99 -764 2273 92 0 0 chr1 211951782 211952090 -30712263 - AluSc SINE Alu 0 308 1 3803 199 38 33 chr1 211952090 211952836 -30711517 + MER21B LTR ERV1 99 852 -11 1333 233 41 6 chr1 211952855 211953198 -30711155 - MLT1A2 LTR MaLR -16 358 4 893 224 49 62 chr1 211953207 211953515 -30710838 - L2 LINE L2 -1190 2124 1821 37 23 0 0 chr1 211954213 211954257 -30710096 + AT_rich Low_complexity Low_complexity 1 44 0 3703 182 167 29 chr1 211954586 211955606 -30708747 - MER52A LTR ERV1 -519 1236 1 851 195 0 0 chr1 211955606 211955780 -30708573 + L1P LINE L1 4917 5090 -1056 1166 226 146 81 chr1 211955780 211956569 -30707784 - LTR1B LTR ERV1 0 1020 12 4337 173 26 37 chr1 211956832 211958326 -30706027 + MER52A LTR ERV1 287 1755 0 5764 188 31 5 chr1 211958326 211959589 -30704764 - L1P LINE L1 -1226 4920 3625 283 200 14 0 chr1 211960768 211960840 -30703513 + MLT1J LTR MaLR 109 245 -340 216 0 0 0 chr1 211961302 211961326 -30703027 + (TG)n Simple_repeat Simple_repeat 2 25 0 666 181 21 25 chr1 211961466 211961626 -30702727 - MLT1E3 LTR MaLR -373 281 65 501 222 69 48 chr1 211961483 211961672 -30702681 - MLT2C1 LTR ERVL -204 193 1 * 278 294 72 116 chr1 211961719 211962298 -30702055 - L2 LINE L2 -613 2701 2148 986 171 148 36 chr1 211962822 211963127 -30701226 - MER44D DNA MER2_type 0 609 1 469 257 86 14 chr1 211963143 211963283 -30701070 - MIR SINE MIR -2 260 111 590 252 213 31 chr1 211963297 211963555 -30700798 - L2 LINE L2 0 3313 3009 1626 297 60 4 chr1 211963561 211964090 -30700263 - L2 LINE L2 -409 2905 2347 2266 109 0 0 chr1 211964090 211964383 -30699970 + AluSq SINE Alu 1 293 -20 23 0 0 0 chr1 211964592 211964615 -30699738 + AT_rich Low_complexity Low_complexity 1 23 0 719 294 101 0 chr1 211966837 211967065 -30697288 - MIR SINE MIR -5 257 7 460 318 69 58 chr1 211967064 211967341 -30697012 + L2 LINE L2 2993 3272 0 * 180 282 106 35 chr1 211968242 211968327 -30696026 - L2 LINE L2 -30 3283 3193 699 273 104 18 chr1 211968537 211968757 -30695596 - MIR SINE MIR -13 249 11 260 276 66 0 chr1 211968957 211969033 -30695320 + MIR SINE MIR 103 183 -79 315 336 40 27 chr1 211969052 211969201 -30695152 - L2 LINE L2 0 3313 3163 258 40 20 40 chr1 211970228 211970278 -30694075 + (GGA)n Simple_repeat Simple_repeat 1 49 0 210 69 0 0 chr1 211970919 211970948 -30693405 - L2 LINE L2 -1 3312 3284 2293 118 31 8 chr1 211971168 211971524 -30692829 - THE1B LTR MaLR 0 364 1 679 185 0 15 chr1 211973199 211973329 -30691024 - FLAM_A SINE Alu -6 136 9 338 345 35 18 chr1 211973336 211973449 -30690904 - L2 LINE L2 0 3272 3158 539 232 0 18 chr1 211975440 211975552 -30688801 - L2 LINE L2 -1 3312 3203 402 285 61 18 chr1 211975845 211976010 -30688343 - MIR SINE MIR -54 208 37 353 263 11 0 chr1 211977230 211977325 -30687028 - Zaphod DNA AcHobo 0 4031 3936 298 256 0 33 chr1 211977885 211977975 -30686378 - Zaphod DNA AcHobo -3944 87 1 2147 136 0 0 chr1 211978123 211978432 -30685921 + AluSx SINE Alu 1 309 -3 2078 152 0 6 chr1 211979089 211979404 -30684949 + AluSq SINE Alu 1 313 0 285 146 0 0 chr1 211980360 211980408 -30683945 + (T)n Simple_repeat Simple_repeat 1 48 0 216 0 0 0 chr1 211980917 211980941 -30683412 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1311 211 86 26 chr1 211981338 211981689 -30682664 + MLT1A2 LTR MaLR 1 372 -2 1698 167 44 0 chr1 211983256 211983526 -30680827 + AluSx SINE Alu 1 282 -30 222 37 0 0 chr1 211983526 211983553 -30680800 + (TA)n Simple_repeat Simple_repeat 2 28 0 210 393 9 0 chr1 211984182 211984294 -30680059 - L2 LINE L2 -220 3052 2940 4409 109 6 0 chr1 211984742 211985391 -30678962 - L1PA13 LINE L1 -2 6161 5509 234 130 0 0 chr1 211985498 211985544 -30678809 - LTR66 LTR ERVL -171 439 394 234 130 0 0 chr1 211985506 211985552 -30678801 + LTR66 LTR ERVL 394 439 -171 317 304 74 0 chr1 211985840 211985975 -30678378 - MLT1L LTR MaLR -296 319 175 241 268 0 0 chr1 211986007 211986078 -30678275 - MLT1L LTR MaLR -542 73 3 199 308 128 23 chr1 211986163 211986335 -30678018 + L2 LINE L2 2512 2701 -613 1061 325 132 45 chr1 211987148 211988971 -30675382 + L2 LINE L2 1293 3272 0 589 304 34 74 chr1 211989436 211989515 -30674838 + MLT1I LTR MaLR 97 178 -231 2309 103 0 0 chr1 211989515 211989816 -30674537 + AluSx SINE Alu 1 301 -11 589 304 34 74 chr1 211989816 211990062 -30674291 + MLT1I LTR MaLR 178 409 0 228 263 23 45 chr1 211990065 211990198 -30674155 + L1MC4a LINE L1 4094 4223 -1923 993 264 61 64 chr1 211990338 211990861 -30673492 - L2 LINE L2 -67 3246 2726 558 296 78 77 chr1 211990929 211991540 -30672813 + L1MC4a LINE L1 4574 5188 -958 1674 152 34 20 chr1 211991540 211991836 -30672517 + AluJb SINE Alu 1 300 -12 558 296 78 77 chr1 211991836 211991965 -30672388 + L1MC4a LINE L1 5188 5315 -831 564 15 0 0 chr1 211992152 211992217 -30672136 + (GAGAA)n Simple_repeat Simple_repeat 1 65 0 610 308 141 7 chr1 211992217 211992516 -30671837 - L2 LINE L2 -377 2937 2599 369 273 206 19 chr1 211992582 211992791 -30671562 - L1ME LINE L1 -526 5595 5348 790 289 114 62 chr1 211992797 211993296 -30671057 + L2 LINE L2 1915 2439 -875 362 266 72 14 chr1 211993391 211993414 -30670939 + L1MC4a LINE L1 5686 5706 -2102 2157 157 16 19 chr1 211993414 211993790 -30670563 + THE1C LTR MaLR 1 375 0 362 266 72 14 chr1 211993790 211993905 -30670448 + L1MC4a LINE L1 5706 5832 -1976 523 153 10 10 chr1 211994413 211994511 -30669842 + MER4A LTR ERV1 1 98 -566 1847 128 171 20 chr1 211994511 211994862 -30669491 + MER4A LTR ERV1 261 664 0 2577 97 83 41 chr1 211994865 211995333 -30669020 + MER4A-int LTR ERV1 1 621 -5977 4274 79 39 5 chr1 211995333 211995918 -30668435 - LTR14B LTR ERVK 0 608 4 2577 97 83 41 chr1 211995918 211996131 -30668222 + MER4A-int LTR ERV1 621 824 -5774 40951 31 22 1 chr1 211996274 212002299 -30662054 - L1HS LINE L1 -1 6154 3 252 111 0 44 chr1 212002315 212002360 -30661993 + LTR49 LTR ERV1 271 313 -282 9019 116 154 109 chr1 212002360 212004043 -30660310 + MER4A-int LTR ERV1 865 2719 -3879 8882 117 9 4 chr1 212004043 212005322 -30659031 + HSMAR1 DNA Mariner 1 1286 -1 9019 116 154 109 chr1 212005322 212006337 -30658016 + MER4A-int LTR ERV1 2719 3686 -2912 4913 92 54 24 chr1 212006333 212007133 -30657220 + MER4A-int LTR ERV1 3839 4662 -1936 * 1532 210 93 115 chr1 212007133 212008092 -30656261 + LTR1B LTR ERV1 1 1020 0 11576 104 50 18 chr1 212008092 212009220 -30655133 + MER4A-int LTR ERV1 4659 5872 -726 2385 84 14 0 chr1 212009220 212009516 -30654837 + AluY SINE Alu 1 300 -11 11576 104 50 18 chr1 212009516 212010267 -30654086 + MER4A-int LTR ERV1 5872 6598 0 584 126 0 48 chr1 212010268 212010371 -30653982 + MER4A LTR ERV1 1 98 -566 1944 111 11 25 chr1 212010371 212010721 -30653632 + MER4A LTR ERV1 261 664 0 246 337 91 45 chr1 212010785 212010984 -30653369 + MIR SINE MIR 4 211 -51 357 330 73 18 chr1 212011565 212011783 -30652570 + MIR SINE MIR 10 239 -23 292 217 0 17 chr1 212011876 212011936 -30652417 + L2 LINE L2 3245 3303 -10 3572 119 26 4 chr1 212013024 212013563 -30650790 + MER41C LTR ERV1 2 552 -2 2468 71 0 7 chr1 212013810 212014118 -30650235 - AluSq SINE Alu -7 306 1 193 288 175 12 chr1 212014235 212014315 -30650038 + L3b LINE CR1 1478 1570 -13 455 326 89 41 chr1 212015658 212016051 -30648302 - L3b LINE CR1 -45 1538 1127 22 70 0 0 chr1 212016952 212016995 -30647358 + AT_rich Low_complexity Low_complexity 1 43 0 2371 109 0 0 chr1 212017203 212017515 -30646838 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 212020745 212020766 -30643587 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 212021034 212021055 -30643298 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 212023049 212023072 -30641281 + AT_rich Low_complexity Low_complexity 1 23 0 209 294 0 0 chr1 212023167 212023218 -30641135 - L2 LINE L2 0 3272 3222 337 274 0 43 chr1 212023928 212024045 -30640308 + L1MB8 LINE L1 3767 3878 -2268 5374 208 38 32 chr1 212024076 212024848 -30639505 + L1MB8 LINE L1 3826 4592 -1586 2186 120 7 0 chr1 212024848 212025156 -30639197 - AluSg SINE Alu 0 310 1 5374 208 38 32 chr1 212025156 212026724 -30637629 + L1MB8 LINE L1 4592 6172 -6 229 337 60 72 chr1 212028403 212028738 -30635615 - L2 LINE L2 -770 2544 2214 1505 171 83 19 chr1 212029121 212029461 -30634892 + MLT1A1 LTR MaLR 1 499 -6 185 200 25 0 chr1 212030490 212030530 -30633823 - MIR SINE MIR -69 139 99 272 301 89 55 chr1 212030602 212030748 -30633605 + L2 LINE L2 3163 3313 0 653 171 41 71 chr1 212030917 212031087 -30633266 - L1MA10 LINE L1 -1 6333 6169 1736 169 21 3 chr1 212031117 212031407 -30632946 + AluJb SINE Alu 1 295 -17 454 230 261 6 chr1 212031842 212032007 -30632346 + MIR SINE MIR 55 261 -1 184 327 135 19 chr1 212032027 212032131 -30632222 - L2 LINE L2 -968 2346 2231 365 171 40 0 chr1 212032613 212032689 -30631664 - MER53 DNA DNA -84 105 27 210 37 0 0 chr1 212032689 212032716 -30631637 + (TG)n Simple_repeat Simple_repeat 2 28 0 1911 114 66 0 chr1 212032745 212033018 -30631335 - AluSx SINE Alu -21 291 1 333 196 14 189 chr1 212033184 212033327 -30631026 + MIR SINE MIR 9 126 -136 24 67 0 0 chr1 212033851 212033896 -30630457 + AT_rich Low_complexity Low_complexity 1 45 0 47 0 0 0 chr1 212035059 212035106 -30629247 + AT_rich Low_complexity Low_complexity 1 47 0 528 227 16 23 chr1 212035487 212035615 -30628738 + L2 LINE L2 3187 3313 0 23 33 0 0 chr1 212036555 212036585 -30627768 + AT_rich Low_complexity Low_complexity 1 30 0 1845 148 40 17 chr1 212038168 212038465 -30625888 - AluJb SINE Alu -8 304 1 284 0 28 0 chr1 212039180 212039216 -30625137 + (TA)n Simple_repeat Simple_repeat 1 37 0 575 247 44 19 chr1 212039434 212039592 -30624761 + MLT1J2 LTR MaLR 52 213 -237 2294 95 3 0 chr1 212039643 212039949 -30624404 + AluSc SINE Alu 1 307 -2 413 144 122 0 chr1 212040432 212040522 -30623831 + FLAM_A SINE Alu 40 140 -2 2109 139 3 0 chr1 212040535 212040845 -30623508 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr1 212040879 212040911 -30623442 + AT_rich Low_complexity Low_complexity 1 32 0 442 269 0 57 chr1 212040990 212041131 -30623222 - FLAM_A SINE Alu 0 133 1 1493 171 0 15 chr1 212041826 212042089 -30622264 - AluJo SINE Alu 0 312 54 289 315 134 20 chr1 212042181 212042486 -30621867 - HAL1b LINE L1 -697 651 312 256 301 18 44 chr1 212042653 212042766 -30621587 - L2 LINE L2 0 3313 3204 222 37 0 0 chr1 212042966 212042993 -30621360 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1539 167 29 21 chr1 212042995 212043276 -30621077 - AluJb SINE Alu -29 283 1 4462 207 38 23 chr1 212043317 212045020 -30619333 - L1MB7 LINE L1 -69 6115 4381 2189 119 0 0 chr1 212045028 212045321 -30619032 - AluSc SINE Alu -8 301 9 252 259 19 70 chr1 212045336 212045494 -30618859 - L1MC4 LINE L1 -1 8041 7892 386 284 108 20 chr1 212045912 212046060 -30618293 - L2 LINE L2 -2 3311 3151 582 257 99 20 chr1 212046061 212046263 -30618090 + MER46C DNA MER2_type 1 218 -120 42 65 0 0 chr1 212046354 212046431 -30617922 + AT_rich Low_complexity Low_complexity 1 77 0 594 79 0 0 chr1 212046436 212046512 -30617841 + AluY SINE Alu 218 293 -18 205 279 32 117 chr1 212046694 212046848 -30617505 - L2 LINE L2 -267 3046 2906 26 0 0 0 chr1 212047818 212047844 -30616509 + AT_rich Low_complexity Low_complexity 1 26 0 180 167 42 0 chr1 212049961 212050033 -30614320 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 24 53 0 0 chr1 212050152 212050190 -30614163 + AT_rich Low_complexity Low_complexity 1 38 0 664 198 68 23 chr1 212050296 212050473 -30613880 + MER53 DNA DNA 2 186 -3 34 24 0 0 chr1 212053235 212053276 -30611077 + AT_rich Low_complexity Low_complexity 1 41 0 991 259 123 35 chr1 212053726 212054212 -30610141 + MARNA DNA Mariner 42 570 -16 1695 174 0 37 chr1 212054665 212054987 -30609366 + AluJo SINE Alu 1 310 -2 764 182 0 0 chr1 212055126 212055269 -30609084 + L1PA16 LINE L1 6021 6163 -3 479 296 58 37 chr1 212056501 212056690 -30607663 + MIR3 SINE MIR 6 198 -10 395 286 10 0 chr1 212056855 212056953 -30607400 - MIR SINE MIR -115 147 49 2498 107 28 6 chr1 212057440 212057794 -30606559 + THE1B LTR MaLR 1 362 -2 258 348 44 29 chr1 212058060 212058264 -30606089 - L2 LINE L2 -457 2857 2651 2006 214 94 66 chr1 212058392 212058781 -30605572 + MER45B DNA AcHobo 15 429 -611 1999 98 6 77 chr1 212058781 212059118 -30605235 + AluSp SINE Alu 1 313 0 2006 214 94 66 chr1 212059118 212059334 -30605019 + MER45B DNA AcHobo 429 637 -403 7329 1 1 0 chr1 212059336 212060189 -30604164 + L1HS LINE L1 5301 6154 -1 1888 194 17 2 chr1 212060189 212060591 -30603762 + MER45B DNA AcHobo 633 1040 0 1001 172 55 92 chr1 212060668 212060994 -30603359 + MER5C DNA MER1_type 7 320 -4 468 276 46 33 chr1 212061400 212061552 -30602801 - MER5B DNA MER1_type -4 174 21 689 178 120 37 chr1 212061622 212061813 -30602540 - MER45B DNA AcHobo -4 1036 830 646 238 68 0 chr1 212061986 212062133 -30602220 + MIR SINE MIR 42 198 -64 363 222 0 0 chr1 212062133 212062196 -30602157 + Tigger3(Golem) DNA MER2_type 1 63 -2966 * 632 168 76 0 chr1 212062192 212062311 -30602042 + Tigger3(Golem) DNA MER2_type 2911 3038 0 233 224 0 35 chr1 212062316 212062374 -30601979 + MIR SINE MIR 202 257 -5 2566 58 0 6 chr1 212062392 212062704 -30601649 - AluY SINE Alu -1 310 1 2196 92 10 7 chr1 212063246 212063540 -30600813 + AluSq SINE Alu 1 295 -18 251 340 146 53 chr1 212063555 212064288 -30600065 + L2 LINE L2 2033 2833 -481 204 179 0 0 chr1 212066292 212066331 -30598022 + T-rich Low_complexity Low_complexity 1 39 0 252 274 53 53 chr1 212067811 212067906 -30596447 + MIR SINE MIR 161 255 -7 2103 128 3 0 chr1 212068747 212069052 -30595301 - AluSx SINE Alu -6 306 1 2391 55 0 7 chr1 212069082 212069375 -30594978 - AluY SINE Alu -20 291 1 1083 261 42 30 chr1 212069398 212069800 -30594553 - L1ME1 LINE L1 -5 6161 5755 3718 177 58 12 chr1 212069802 212070548 -30593805 - MER54A LTR ERVL -1 900 121 867 132 0 0 chr1 212070549 212070670 -30593683 + FLAM_C SINE Alu 1 121 -22 21 0 0 0 chr1 212070670 212070691 -30593662 + AT_rich Low_complexity Low_complexity 1 21 0 602 189 23 0 chr1 212070729 212070861 -30593492 - MER54A LTR ERVL -764 137 3 1287 196 102 59 chr1 212070878 212071318 -30593035 - MLT1C LTR MaLR 0 467 9 680 264 84 0 chr1 212071327 212071588 -30592765 - L1ME1 LINE L1 -418 5748 5466 706 254 62 4 chr1 212071589 212071849 -30592504 - L1ME1 LINE L1 -865 5281 5007 915 167 29 29 chr1 212071880 212072054 -30592299 - FAM SINE Alu 0 175 2 1420 204 66 42 chr1 212072091 212072469 -30591884 - MSTD LTR MaLR -4 392 6 1036 262 14 18 chr1 212072607 212072889 -30591464 + MLT1H1 LTR MaLR 275 555 0 37 0 0 0 chr1 212072967 212073004 -30591349 + AT_rich Low_complexity Low_complexity 1 37 0 248 224 30 0 chr1 212073457 212073524 -30590829 + (TA)n Simple_repeat Simple_repeat 2 70 0 2012 152 64 0 chr1 212074275 212074618 -30589735 + MLT1A1 LTR MaLR 1 365 0 3993 194 41 23 chr1 212074943 212075781 -30588572 + MER21B LTR ERV1 2 854 -9 243 186 0 51 chr1 212075983 212076042 -30588311 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 219 150 0 0 chr1 212076386 212076426 -30587927 + (TA)n Simple_repeat Simple_repeat 2 41 0 472 322 120 28 chr1 212076925 212077208 -30587145 - L2 LINE L2 0 3313 3005 5795 24 0 0 chr1 212077211 212077944 -30586409 + L1PA3 LINE L1 5435 6167 0 411 341 145 31 chr1 212077946 212078298 -30586055 - L2 LINE L2 -339 2975 2584 579 362 65 38 chr1 212078320 212078765 -30585588 + L1MEc LINE L1 20 476 -5920 502 292 43 52 chr1 212079069 212079589 -30584764 + L1MEc LINE L1 591 1224 -4981 1043 275 124 6 chr1 212079708 212080329 -30584024 + L1MEc LINE L1 3109 3802 -2413 595 256 33 40 chr1 212080335 212080608 -30583745 + L1ME2 LINE L1 5814 6084 -80 267 222 0 0 chr1 212080662 212080734 -30583619 + L1ME2 LINE L1 6093 6164 0 213 222 0 0 chr1 212081935 212081998 -30582355 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 43 0 0 chr1 212082085 212082108 -30582245 + AT_rich Low_complexity Low_complexity 1 23 0 1209 178 13 13 chr1 212082263 212082488 -30581865 - AluJb SINE Alu -7 305 81 236 259 7 72 chr1 212082488 212082627 -30581726 - HAL1b LINE L1 -678 670 541 2220 113 3 3 chr1 212082631 212082940 -30581413 - AluSx SINE Alu -3 309 1 2387 52 0 3 chr1 212083239 212083529 -30580824 + AluY SINE Alu 21 309 -2 210 139 0 0 chr1 212083534 212083570 -30580783 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 832 246 17 38 chr1 212083617 212083765 -30580588 - L2 LINE L2 -4 3309 3166 304 221 13 0 chr1 212083765 212083842 -30580511 - MER116 DNA Mariner -1 79 2 832 246 17 38 chr1 212083842 212083933 -30580420 - L2 LINE L2 -147 3166 3075 386 324 17 45 chr1 212084346 212084464 -30579889 + MER5B DNA MER1_type 2 115 -63 2292 117 61 0 chr1 212084464 212084807 -30579546 - THE1B LTR MaLR 0 364 1 386 324 17 45 chr1 212084807 212084864 -30579489 + MER5B DNA MER1_type 115 172 -6 * 628 216 37 62 chr1 212084846 212085008 -30579345 - MER5B DNA MER1_type -20 158 1 398 199 32 102 chr1 212085099 212085285 -30579068 - MER34 LTR ERV1 0 542 370 280 164 30 45 chr1 212085327 212085394 -30578959 - MER34C LTR ERV1 -484 101 36 635 270 137 0 chr1 212085437 212085663 -30578690 - MIR SINE MIR -3 259 3 1730 179 0 3 chr1 212085699 212086010 -30578343 - AluJb SINE Alu 0 310 1 241 333 123 10 chr1 212089052 212089256 -30575097 + L2 LINE L2 2825 3051 -221 339 334 63 67 chr1 212089532 212089831 -30574522 + L3 LINE CR1 352 649 -928 493 232 0 0 chr1 212089892 212089987 -30574366 - MIR SINE MIR -55 207 113 265 365 19 0 chr1 212090000 212090107 -30574246 + L3 LINE CR1 681 789 -788 302 275 150 0 chr1 212091318 212091438 -30572915 - L1MDa LINE L1 -2698 3946 3809 1647 292 120 48 chr1 212091444 212092352 -30572001 + L1M4b LINE L1 10 1204 -5655 305 295 9 9 chr1 212092389 212092501 -30571852 + L1M4b LINE L1 1077 1188 -5667 621 198 45 28 chr1 212092865 212093042 -30571311 + L1M4b LINE L1 1242 1421 -5438 618 171 79 0 chr1 212093040 212093180 -30571173 + L1MC3 LINE L1 7624 7774 -11 * 1329 250 56 103 chr1 212093188 212094106 -30570247 + L1M4b LINE L1 1615 2818 -4320 198 0 0 0 chr1 212094110 212094132 -30570221 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1222 219 36 15 chr1 212094135 212094524 -30569829 - L1MDa LINE L1 -2815 3829 3433 761 222 44 20 chr1 212094564 212094816 -30569537 - L1M4 LINE L1 -4988 1554 1297 2273 78 0 3 chr1 212094827 212095110 -30569243 - AluY SINE Alu -15 296 15 350 193 102 0 chr1 212095110 212095198 -30569155 - L1MC3 LINE L1 -11 7774 7678 316 272 83 22 chr1 212095202 212095382 -30568971 - L1MDa LINE L1 -3588 3056 2866 195 295 105 21 chr1 212095629 212095724 -30568629 + MIR3 SINE MIR 14 116 -92 289 336 115 39 chr1 212095872 212096240 -30568113 + L2 LINE L2 2682 3078 -194 261 0 0 0 chr1 212097091 212097120 -30567233 + (CA)n Simple_repeat Simple_repeat 2 30 0 526 167 12 56 chr1 212097522 212097761 -30566592 + AluJ SINE Alu 1 296 -16 1634 184 0 41 chr1 212098261 212098577 -30565776 + AluJb SINE Alu 1 303 -9 3704 139 15 17 chr1 212098585 212099239 -30565114 + L1PA16 LINE L1 5509 6161 -5 201 300 0 38 chr1 212099655 212099735 -30564618 + MIR SINE MIR 56 132 -130 * 607 222 27 54 chr1 212099731 212099916 -30564437 - L2 LINE L2 -2 3311 3132 3491 286 51 16 chr1 212100008 212100748 -30563605 - L2 LINE L2 -411 2903 2107 2172 114 0 10 chr1 212100748 212101055 -30563298 + AluY SINE Alu 1 304 -7 3491 286 51 16 chr1 212101055 212101465 -30562888 - L2 LINE L2 -1207 2107 1713 291 265 14 88 chr1 212101630 212101777 -30562576 - MLT1K LTR MaLR -3 585 450 234 174 0 0 chr1 212102245 212102291 -30562062 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 757 279 0 0 chr1 212102492 212102671 -30561682 + LTR28 LTR ERV1 1 179 -841 535 232 23 59 chr1 212102691 212102955 -30561398 + MER52A LTR ERV1 340 1229 -12 930 269 114 41 chr1 212103109 212103707 -30560646 - L1MDa LINE L1 -4121 2523 1838 956 187 18 68 chr1 212103707 212103926 -30560427 + MER63A DNA MER1_type 1 208 -2 930 269 114 41 chr1 212103926 212104213 -30560140 - L1MDa LINE L1 -4806 1838 1573 445 344 5 10 chr1 212104256 212104451 -30559902 - L1MDa LINE L1 -5131 1503 1310 196 330 93 10 chr1 212104459 212104556 -30559797 + MIR SINE MIR 132 236 -26 288 286 78 0 chr1 212104668 212104745 -30559608 - MIR3 SINE MIR -13 195 113 252 205 103 51 chr1 212104794 212104872 -30559481 + L2 LINE L2 3232 3313 0 480 222 68 62 chr1 212104906 212105046 -30559307 - MER104 DNA Tc2 -1718 180 42 1266 164 7 152 chr1 212105046 212105206 -30559147 - MLT1A1 LTR MaLR 0 365 184 2106 104 0 80 chr1 212105206 212105400 -30558953 - AluSp SINE Alu -3 310 153 225 0 0 0 chr1 212105400 212105425 -30558928 + (TA)n Simple_repeat Simple_repeat 2 26 0 2106 104 0 80 chr1 212105425 212105567 -30558786 - AluSp SINE Alu -160 153 1 1266 164 7 152 chr1 212105567 212105663 -30558690 - MLT1A1 LTR MaLR -181 184 190 2178 114 3 3 chr1 212105663 212105962 -30558391 - AluY SINE Alu -7 304 6 1266 164 7 152 chr1 212105962 212106126 -30558227 - MLT1A1 LTR MaLR -174 191 5 480 222 68 62 chr1 212106126 212106161 -30558192 - MER104 DNA Tc2 -1856 42 4 256 303 64 64 chr1 212106922 212107031 -30557322 - L2 LINE L2 -39 3233 3125 1608 97 18 0 chr1 212108197 212108423 -30555930 - MER30 DNA MER1_type 0 230 1 476 253 109 39 chr1 212108456 212108505 -30555848 + Charlie7 DNA MER1_type 77 121 -2491 754 164 15 22 chr1 212108505 212108639 -30555714 + FLAM_A SINE Alu 1 133 0 476 253 109 39 chr1 212108639 212108818 -30555535 + Charlie7 DNA MER1_type 121 321 -2291 295 148 0 19 chr1 212108816 212108870 -30555483 + Charlie7 DNA MER1_type 1428 1480 -1132 * 1738 159 7 35 chr1 212109089 212109408 -30554945 - AluJo SINE Alu 0 311 1 253 309 52 22 chr1 212109410 212109546 -30554807 - L1MC4a LINE L1 -1872 5936 5797 932 184 14 5 chr1 212109546 212109769 -30554584 - L1MA7 LINE L1 0 6291 6067 1152 138 0 0 chr1 212109769 212109943 -30554410 + L1M2 LINE L1 5492 5665 -626 * 1255 247 16 10 chr1 212109940 212110244 -30554109 - L1MC4a LINE L1 -2007 5801 5496 1211 190 137 19 chr1 212110244 212110654 -30553699 + Charlie7 DNA MER1_type 2090 2547 -65 560 294 106 47 chr1 212111517 212111922 -30552431 - L1ME4a LINE L1 -41 6080 5652 568 247 99 62 chr1 212112159 212112511 -30551842 - L1ME4a LINE L1 -57 6064 5700 331 287 88 60 chr1 212112593 212112924 -30551429 - L1MC4a LINE L1 -806 5340 5001 203 0 0 36 chr1 212113296 212113324 -30551029 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 2373 75 0 3 chr1 212113334 212113640 -30550713 - AluY SINE Alu -2 309 5 1560 173 35 0 chr1 212114137 212114449 -30549904 - MER33 DNA MER1_type -1 323 1 47 78 0 0 chr1 212114981 212115084 -30549269 + AT_rich Low_complexity Low_complexity 1 103 0 232 341 88 0 chr1 212115977 212116068 -30548285 - MIR SINE MIR -107 155 57 298 311 29 10 chr1 212116228 212116331 -30548022 + MIR SINE MIR 122 226 -36 1882 155 0 7 chr1 212116520 212116811 -30547542 + AluJo SINE Alu 1 289 -23 310 20 0 41 chr1 212116814 212116863 -30547490 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 879 209 6 0 chr1 212116869 212117032 -30547321 + U1 snRNA snRNA 1 164 -1 42 20 0 0 chr1 212117032 212117081 -30547272 + AT_rich Low_complexity Low_complexity 1 49 0 2138 117 0 3 chr1 212117262 212117560 -30546793 - AluSp SINE Alu -16 297 1 717 283 74 22 chr1 212117677 212117946 -30546407 + L1MC3 LINE L1 57 339 -6057 814 288 0 23 chr1 212118165 212118380 -30545973 + MER58C DNA MER1_type 1 210 -5 1331 259 90 23 chr1 212118384 212118802 -30545551 + L1MC3 LINE L1 660 1049 -5347 2057 146 0 10 chr1 212118802 212119103 -30545250 + AluSx SINE Alu 1 298 -14 1331 259 90 23 chr1 212119103 212119429 -30544924 + L1MC3 LINE L1 1049 1454 -4942 2246 105 3 0 chr1 212119450 212119756 -30544597 + AluSg1 SINE Alu 1 307 -2 180 0 0 0 chr1 212119856 212119876 -30544477 + (TA)n Simple_repeat Simple_repeat 1 20 0 1386 215 36 36 chr1 212119900 212120318 -30544035 + L1MC3 LINE L1 4405 4822 -1393 597 188 101 0 chr1 212120313 212120451 -30543902 + L1MC3 LINE L1 5894 6045 -1809 * 997 190 5 45 chr1 212120451 212120700 -30543653 + AluSg/x SINE Alu 85 312 0 2867 173 172 97 chr1 212120700 212121567 -30542786 + L1MC3 LINE L1 6037 6968 -886 411 253 99 11 chr1 212121613 212121761 -30542592 + L1ME1 LINE L1 3587 3755 -2391 2114 138 0 0 chr1 212121761 212122058 -30542295 + AluJb SINE Alu 1 297 -15 411 253 99 11 chr1 212122058 212122091 -30542262 + L1ME1 LINE L1 3755 3784 -2362 280 234 0 16 chr1 212122092 212122156 -30542197 + MLT2F LTR ERVL 1 63 -600 885 137 7 7 chr1 212122164 212122348 -30542005 - AluY SINE Alu 0 319 136 1056 310 70 31 chr1 212122360 212122931 -30541422 + MLT2F LTR ERVL 71 663 0 1803 255 24 18 chr1 212122931 212123477 -30540876 + L1ME1 LINE L1 3781 4329 -1817 2377 234 81 47 chr1 212123480 212124235 -30540118 + L1ME1 LINE L1 4391 5188 -958 1301 215 66 33 chr1 212124235 212124537 -30539816 + AluJb SINE Alu 1 312 0 2377 234 81 47 chr1 212124537 212124761 -30539592 + L1ME1 LINE L1 5188 5403 -743 364 217 12 0 chr1 212124783 212124866 -30539487 + L1ME1 LINE L1 5691 5774 -392 2434 147 52 12 chr1 212124867 212125241 -30539112 - MER47B DNA MER2_type -1905 418 25 2358 146 24 52 chr1 212125241 212125741 -30538612 - MER66B LTR ERV1 0 486 1 2434 147 52 12 chr1 212125741 212125768 -30538585 - MER47B DNA MER2_type -2298 25 1 728 252 145 38 chr1 212125774 212126119 -30538234 + L1ME1 LINE L1 5780 6161 -5 24 0 0 0 chr1 212126120 212126144 -30538209 + AT_rich Low_complexity Low_complexity 1 24 0 1045 105 0 46 chr1 212126451 212126604 -30537749 + AluJb SINE Alu 1 146 -166 361 275 77 123 chr1 212126612 212126987 -30537366 - L1M4 LINE L1 -5667 1188 831 365 276 46 65 chr1 212127175 212127392 -30536961 - L1M4 LINE L1 -6634 225 13 1532 174 21 122 chr1 212127478 212127669 -30536684 + MLT1C LTR MaLR 3 212 -255 2273 112 0 3 chr1 212127669 212127981 -30536372 + AluSx SINE Alu 1 311 -1 1532 174 21 122 chr1 212127981 212128306 -30536047 + MLT1C LTR MaLR 212 467 0 340 343 66 20 chr1 212128311 212128509 -30535844 + L1M4 LINE L1 2576 2782 -3364 258 287 21 0 chr1 212128542 212128636 -30535717 + L1P5 LINE L1 5356 5451 -705 * 13959 175 39 6 chr1 212128607 212132513 -30531840 + L1PB1 LINE L1 2459 6487 -380 241 109 0 55 chr1 212132513 212132568 -30531785 - LTR66 LTR ERVL -165 445 394 432 208 0 0 chr1 212132568 212132674 -30531679 + (CA)n Simple_repeat Simple_repeat 2 107 0 2493 82 23 3 chr1 212132674 212133026 -30531327 + L1PB1 LINE L1 6507 6865 -2 258 32 0 0 chr1 212133071 212133102 -30531251 + (GA)n Simple_repeat Simple_repeat 1 31 0 998 288 68 47 chr1 212133118 212133577 -30530776 + L1ME3A LINE L1 1296 1773 -4623 2221 119 0 7 chr1 212133577 212133887 -30530466 + AluSq SINE Alu 1 308 -5 998 288 68 47 chr1 212133887 212134063 -30530290 + L1ME3A LINE L1 1773 1944 -4452 186 43 0 0 chr1 212134396 212134419 -30529934 + (TTG)n Simple_repeat Simple_repeat 2 24 0 201 304 63 13 chr1 212134676 212134755 -30529598 - MIR SINE MIR -159 103 21 2580 140 27 29 chr1 212134821 212135265 -30529088 - MSTB2 LTR MaLR 0 457 15 2111 255 103 31 chr1 212135453 212135630 -30528723 + L1ME3A LINE L1 3842 4005 -2234 1515 174 106 3 chr1 212135630 212135912 -30528441 + AluJo SINE Alu 1 311 -1 2111 255 103 31 chr1 212135912 212136725 -30527628 + L1ME3A LINE L1 4005 4758 -1481 1552 153 62 62 chr1 212136725 212137097 -30527256 - THE1C LTR MaLR -3 372 1 2111 255 103 31 chr1 212137097 212138131 -30526222 + L1ME3A LINE L1 4758 6009 -230 23 33 0 0 chr1 212139037 212139067 -30525286 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr1 212140931 212140967 -30523386 + AT_rich Low_complexity Low_complexity 1 36 0 195 235 0 39 chr1 212141517 212141568 -30522785 + L2 LINE L2 3256 3304 -9 21 36 0 0 chr1 212141881 212141909 -30522444 + AT_rich Low_complexity Low_complexity 1 28 0 367 346 73 48 chr1 212142114 212142386 -30521967 + L3b LINE CR1 1250 1528 -55 1772 133 14 18 chr1 212142657 212142935 -30521418 - AluJb SINE Alu -24 288 12 210 37 0 0 chr1 212143998 212144025 -30520328 + (TC)n Simple_repeat Simple_repeat 2 28 0 238 358 150 20 chr1 212144917 212145171 -30519182 + MLT1K LTR MaLR 108 394 -194 1330 111 106 0 chr1 212145645 212145852 -30518501 - MER30 DNA MER1_type 0 230 2 347 308 157 0 chr1 212146569 212146728 -30517625 - MER5A DNA MER1_type -5 184 1 23 33 0 0 chr1 212148647 212148677 -30515676 + AT_rich Low_complexity Low_complexity 1 30 0 304 275 94 91 chr1 212151884 212152182 -30512171 + L1M2 LINE L1 652 950 -5899 28 0 0 0 chr1 212154369 212154397 -30509956 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 212157018 212157050 -30507303 + AT_rich Low_complexity Low_complexity 1 32 0 27 73 0 0 chr1 212157592 212157647 -30506706 + AT_rich Low_complexity Low_complexity 1 55 0 23 33 0 0 chr1 212159279 212159309 -30505044 + AT_rich Low_complexity Low_complexity 1 30 0 230 231 0 0 chr1 212160717 212160769 -30503584 + L2 LINE L2 3262 3313 0 630 266 41 0 chr1 212161687 212161856 -30502497 + L2 LINE L2 3111 3286 -27 385 384 28 0 chr1 212161941 212162118 -30502235 - L3 LINE CR1 -22 1555 1374 182 325 60 36 chr1 212162178 212162261 -30502092 - L3 LINE CR1 -202 1375 1291 261 0 0 0 chr1 212162290 212162319 -30502034 + (CA)n Simple_repeat Simple_repeat 2 30 0 222 295 16 0 chr1 212162368 212162429 -30501924 - L2 LINE L2 -74 3198 3137 1012 236 153 65 chr1 212163575 212164097 -30500256 + MLT1G LTR MaLR 23 590 0 290 217 0 29 chr1 212164422 212164491 -30499862 - MLT1K LTR MaLR 0 588 522 1958 102 95 0 chr1 212164518 212164792 -30499561 + AluSq SINE Alu 1 300 -13 1223 92 6 23 chr1 212164792 212164966 -30499387 + AluSg/x SINE Alu 134 304 -8 354 274 12 0 chr1 212165171 212165255 -30499098 - L2 LINE L2 0 3313 3229 251 291 53 69 chr1 212165258 212165505 -30498848 - MLT1L LTR MaLR -368 247 5 21 82 0 0 chr1 212165597 212165646 -30498707 + AT_rich Low_complexity Low_complexity 1 49 0 545 298 42 68 chr1 212168360 212168669 -30495684 - LTR16C LTR ERVL -31 460 160 283 229 83 0 chr1 212168978 212169074 -30495279 - L1MA10 LINE L1 -41 6293 6190 223 186 0 0 chr1 212169115 212169158 -30495195 + (TTA)n Simple_repeat Simple_repeat 1 43 0 508 309 81 27 chr1 212169237 212169460 -30494893 + MIR SINE MIR 13 247 -15 346 326 54 7 chr1 212169855 212170018 -30494335 + MER5B DNA MER1_type 1 183 -6 2384 144 36 10 chr1 212170154 212170571 -30493782 - MSTA LTR MaLR 0 428 1 288 309 140 29 chr1 212171140 212171276 -30493077 + L2 LINE L2 3122 3272 0 1829 159 0 7 chr1 212171363 212171646 -30492707 + AluSx SINE Alu 1 281 -31 200 57 0 29 chr1 212171815 212171850 -30492503 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 204 312 58 97 chr1 212171955 212172263 -30492090 + L2 LINE L2 2945 3240 -32 358 250 142 0 chr1 212172320 212172440 -30491913 - MIR SINE MIR -7 255 119 229 259 62 0 chr1 212172492 212172573 -30491780 - MIR SINE MIR -58 204 119 835 142 8 15 chr1 212172828 212172962 -30491391 - FLAM_C SINE Alu 0 133 1 1195 186 23 19 chr1 212172972 212173236 -30491117 - L1MD1 LINE L1 0 6242 5978 1787 149 36 0 chr1 212173285 212173581 -30490772 + AluJb SINE Alu 1 306 0 246 213 55 31 chr1 212176054 212176181 -30488172 + (TATATG)n Simple_repeat Simple_repeat 5 134 0 1897 164 3 10 chr1 212176311 212176621 -30487732 - AluSx SINE Alu -4 308 1 1462 257 35 11 chr1 212177418 212177784 -30486569 - MLT1H1 LTR MaLR 0 555 181 2145 111 70 3 chr1 212178769 212179110 -30485243 + THE1B LTR MaLR 1 364 0 298 319 229 39 chr1 212179367 212180313 -30484040 + L2 LINE L2 1560 2685 -629 297 229 14 0 chr1 212180496 212180566 -30483787 + MER58B DNA MER1_type 42 112 -229 1433 167 87 14 chr1 212180566 212180952 -30483401 + AluJo SINE Alu 3 408 0 798 193 57 70 chr1 212180952 212181180 -30483173 + MER58B DNA MER1_type 102 326 -15 302 263 25 12 chr1 212181358 212181438 -30482915 - L2 LINE L2 -9 3304 3224 35 24 0 0 chr1 212182925 212182967 -30481386 + AT_rich Low_complexity Low_complexity 1 42 0 240 59 0 0 chr1 212182975 212183009 -30481344 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1853 161 7 0 chr1 212183011 212183291 -30481062 - AluJb SINE Alu -30 282 1 931 196 6 0 chr1 212183410 212183583 -30480770 - FAM SINE Alu 0 175 2 227 87 43 0 chr1 212183720 212183766 -30480587 + (TTAAA)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr1 212183778 212183814 -30480539 + AT_rich Low_complexity Low_complexity 1 36 0 2698 176 77 15 chr1 212184730 212185141 -30479212 + MER44D DNA MER2_type 1 507 -1980 1353 175 63 69 chr1 212185141 212185374 -30478979 - MER7A DNA MER2_type -2693 345 115 1854 139 54 0 chr1 212185374 212185654 -30478699 + AluJb SINE Alu 1 295 -17 1353 175 63 69 chr1 212185654 212185769 -30478584 - MER7A DNA MER2_type -2923 115 1 2698 176 77 15 chr1 212185769 212185875 -30478478 + MER44D DNA MER2_type 507 605 0 315 239 11 0 chr1 212186653 212186741 -30477612 + L1 LINE L1 4249 4337 -1809 626 269 88 0 chr1 212187329 212187500 -30476853 - MIR SINE MIR -71 191 6 383 263 50 10 chr1 212187530 212187629 -30476724 - MIR SINE MIR -118 144 42 283 232 0 0 chr1 212188096 212188152 -30476201 + L2 LINE L2 3242 3297 -16 297 254 198 0 chr1 212188308 212188434 -30475919 + MIR SINE MIR 48 198 -64 610 268 75 22 chr1 212188506 212188734 -30475619 - MIR SINE MIR -12 250 11 4067 126 24 73 chr1 212189069 212189894 -30474459 + LTR1 LTR ERV1 1 785 0 2006 139 16 49 chr1 212190333 212190720 -30473633 - THE1C LTR MaLR -1 374 1 185 209 15 0 chr1 212190967 212191034 -30473319 + CT-rich Low_complexity Low_complexity 2 69 0 267 312 72 40 chr1 212191452 212191577 -30472776 - L2 LINE L2 0 3272 3144 234 0 0 0 chr1 212192858 212192884 -30471469 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 197 128 0 26 chr1 212193880 212193919 -30470434 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 23 54 0 0 chr1 212194092 212194129 -30470224 + AT_rich Low_complexity Low_complexity 1 37 0 261 337 89 10 chr1 212195425 212195526 -30468827 + L2 LINE L2 3151 3259 -13 282 235 118 12 chr1 212195573 212195658 -30468695 + L2 LINE L2 3209 3302 -11 276 196 36 0 chr1 212195703 212195759 -30468594 + L1ME LINE L1 5522 5579 -542 458 182 23 0 chr1 212196240 212196328 -30468025 + Tigger5 DNA MER2_type 2234 2323 0 378 277 36 0 chr1 212196723 212196835 -30467518 + MER94 DNA DNA 4 119 -15 329 285 124 16 chr1 212197008 212197285 -30467068 + HAL1b LINE L1 800 2499 -8 2005 148 20 0 chr1 212197304 212197608 -30466745 + AluJb SINE Alu 1 310 -2 487 307 231 5 chr1 212197663 212197875 -30466478 - MIR SINE MIR 0 262 3 492 275 138 17 chr1 212197892 212198295 -30466058 + L1MC4a LINE L1 5528 5981 -140 329 314 95 62 chr1 212198303 212198416 -30465937 + L2 LINE L2 3022 3130 -183 1953 153 13 0 chr1 212198416 212198724 -30465629 + AluJo SINE Alu 1 312 0 329 314 95 62 chr1 212198724 212198884 -30465469 + L2 LINE L2 3130 3304 -9 191 246 58 58 chr1 212199518 212199587 -30464766 + L2 LINE L2 3244 3312 -1 725 253 29 100 chr1 212200679 212200838 -30463515 + MIR SINE MIR 2 134 -128 1550 148 121 4 chr1 212200838 212201102 -30463251 + AluSx SINE Alu 1 295 -17 725 253 29 100 chr1 212201102 212201223 -30463130 + MIR SINE MIR 134 262 0 198 353 0 0 chr1 212201799 212201867 -30462486 - MIR3 SINE MIR -1 207 140 23 0 0 0 chr1 212201867 212201890 -30462463 + AT_rich Low_complexity Low_complexity 1 23 0 2083 125 0 26 chr1 212201890 212202194 -30462159 - AluSx SINE Alu -16 296 1 235 294 0 33 chr1 212202465 212202557 -30461796 - L1MC4 LINE L1 -1340 6702 6614 1773 180 0 3 chr1 212202580 212202864 -30461489 - AluJb SINE Alu -27 285 3 626 209 0 0 chr1 212203252 212203367 -30460986 + MIR3 SINE MIR 87 201 -7 203 211 0 19 chr1 212204065 212204117 -30460236 + A-rich Low_complexity Low_complexity 4 54 0 195 167 0 0 chr1 212204651 212204693 -30459660 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 325 276 81 77 chr1 212204772 212204937 -30459416 + MIR SINE MIR 40 209 -53 1893 151 4 4 chr1 212204937 212205245 -30459108 + AluSx SINE Alu 3 310 0 325 276 81 77 chr1 212205245 212205299 -30459054 + MIR SINE MIR 209 261 -1 241 143 0 0 chr1 212205623 212205658 -30458695 - U2 snRNA snRNA -153 35 1 355 235 33 127 chr1 212205662 212205844 -30458509 - MIR SINE MIR -64 198 38 230 0 33 0 chr1 212205940 212205970 -30458383 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr1 212206097 212206121 -30458232 + (T)n Simple_repeat Simple_repeat 1 24 0 2544 58 0 0 chr1 212206298 212206606 -30457747 - AluY SINE Alu -2 309 2 691 184 22 7 chr1 212206826 212206962 -30457391 + MLT1A1 LTR MaLR 1 138 -227 661 256 30 19 chr1 212207176 212207387 -30456966 - MIR SINE MIR 0 262 51 741 114 23 46 chr1 212207723 212207854 -30456499 + FLAM_C SINE Alu 1 128 -5 579 231 172 14 chr1 212207982 212208203 -30456150 - MIR SINE MIR -5 257 2 729 173 0 23 chr1 212208772 212208905 -30455448 + FLAM_C SINE Alu 1 130 -3 2304 88 13 3 chr1 212209163 212209469 -30454884 + AluY SINE Alu 1 309 -2 1190 159 173 4 chr1 212210191 212210462 -30453891 - MER33 DNA MER1_type -6 318 2 827 147 0 29 chr1 212210490 212210626 -30453727 + AluJo SINE Alu 2 133 -169 12991 84 23 2 chr1 212211117 212213720 -30450633 + L1PA7 LINE L1 3553 6168 0 285 29 0 0 chr1 212213909 212213943 -30450410 + (CA)n Simple_repeat Simple_repeat 2 35 0 679 213 65 7 chr1 212213944 212214099 -30450254 + MER8 DNA MER2_type 14 177 -62 278 203 102 0 chr1 212214075 212214134 -30450219 + MER2 DNA MER2_type 281 345 0 * 379 178 0 14 chr1 212214134 212214205 -30450148 - Tigger2 DNA MER2_type -2647 71 2 292 283 75 0 chr1 212214205 212214325 -30450028 + L1ME4a LINE L1 5946 6074 -47 901 152 0 0 chr1 212214816 212214954 -30449399 - FLAM_C SINE Alu -5 138 1 714 218 0 15 chr1 212215132 212215265 -30449088 + FLAM_A SINE Alu 1 131 -2 1784 211 61 17 chr1 212215494 212215967 -30448386 + L1ME2 LINE L1 5581 6074 -90 206 74 0 111 chr1 212216013 212216067 -30448286 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 24 32 0 0 chr1 212216665 212216696 -30447657 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 212217359 212217380 -30446973 + AT_rich Low_complexity Low_complexity 1 21 0 741 165 61 49 chr1 212217558 212217722 -30446631 + FRAM SINE Alu 3 168 -8 401 247 0 0 chr1 212217723 212217796 -30446557 + L2 LINE L2 3230 3302 -11 204 40 0 0 chr1 212218014 212218039 -30446314 + (CATTT)n Simple_repeat Simple_repeat 4 28 0 248 326 10 41 chr1 212218323 212218421 -30445932 - L2 LINE L2 -1 3271 3177 1579 93 5 9 chr1 212218935 212219149 -30445204 + AluSc SINE Alu 2 214 -95 306 301 37 55 chr1 212219633 212219681 -30444672 - MIR SINE MIR 0 262 215 757 199 69 56 chr1 212219681 212219897 -30444456 - MER20 DNA MER1_type 0 219 1 306 301 37 55 chr1 212219897 212220011 -30444342 - MIR SINE MIR -47 215 103 221 285 85 11 chr1 212220532 212220654 -30443699 + MIR3 SINE MIR 49 182 -26 1835 140 3 48 chr1 212220908 212221223 -30443130 + AluJb SINE Alu 1 301 -11 586 172 0 90 chr1 212221643 212221788 -30442565 + FLAM_A SINE Alu 1 132 -1 21 0 0 0 chr1 212221793 212221814 -30442539 + AT_rich Low_complexity Low_complexity 1 21 0 380 277 84 66 chr1 212223397 212223610 -30440743 + MIR SINE MIR 45 261 -1 1875 131 50 39 chr1 212223732 212224092 -30440261 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr1 212227214 212227238 -30437115 + AT_rich Low_complexity Low_complexity 1 24 0 477 312 72 14 chr1 212227308 212227529 -30436824 - MIR SINE MIR -1 261 28 416 310 93 8 chr1 212227819 212228077 -30436276 + L1MC4a LINE L1 5637 5916 -1892 2327 86 3 0 chr1 212228083 212228375 -30435978 - AluY SINE Alu -18 293 1 353 285 76 41 chr1 212228615 212228787 -30435566 + MIR SINE MIR 23 200 -62 252 0 0 0 chr1 212229273 212229301 -30435052 + (A)n Simple_repeat Simple_repeat 1 28 0 440 0 36 0 chr1 212231403 212231458 -30432895 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr1 212232301 212232322 -30432031 + AT_rich Low_complexity Low_complexity 1 21 0 205 298 18 70 chr1 212232823 212232937 -30431416 + MIR SINE MIR 100 207 -55 356 358 32 16 chr1 212232970 212233093 -30431260 + L2 LINE L2 3147 3271 -1 1452 194 114 125 chr1 212233298 212233900 -30430453 + L1M4c LINE L1 -455 152 -6416 230 139 0 0 chr1 212233900 212233936 -30430417 + HY4 scRNA scRNA 58 93 0 1452 194 114 125 chr1 212233936 212234106 -30430247 + L1M4c LINE L1 152 1635 -4933 283 132 0 0 chr1 212234114 212234167 -30430186 - MER69 DNA AcHobo -93 2433 2381 376 211 57 20 chr1 212234182 212234380 -30429973 + L1M4c LINE L1 1298 1810 -4765 348 391 76 0 chr1 212234535 212234732 -30429621 - L2 LINE L2 -214 3058 2847 622 178 147 47 chr1 212234734 212234925 -30429428 - MER20 DNA MER1_type -2 217 8 213 322 70 0 chr1 212235048 212235163 -30429190 - L2 LINE L2 -670 2644 2522 897 146 0 7 chr1 212236631 212236768 -30427585 + AluJo SINE Alu 1 136 -176 2173 125 0 0 chr1 212236855 212237152 -30427201 - AluSx SINE Alu -10 302 6 271 86 0 267 chr1 212238074 212238113 -30426240 + L1PB3 LINE L1 5964 5960 -194 674 177 8 15 chr1 212238113 212238230 -30426123 + FLAM_C SINE Alu 1 118 -184 234 0 0 0 chr1 212238230 212238256 -30426097 + (TTA)n Simple_repeat Simple_repeat 1 26 0 674 177 8 15 chr1 212238256 212238268 -30426085 + FLAM_C SINE Alu 118 129 -173 271 86 0 267 chr1 212238268 212238333 -30426020 + L1PB3 LINE L1 5959 6040 -114 1779 167 10 7 chr1 212238335 212238758 -30425595 + AluJb SINE Alu 5 428 0 701 143 48 16 chr1 212238759 212238885 -30425468 + L1PB3 LINE L1 6022 6151 -3 22 0 0 0 chr1 212238954 212238976 -30425377 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr1 212239022 212239057 -30425296 + AT_rich Low_complexity Low_complexity 1 35 0 1868 140 35 7 chr1 212239064 212239350 -30425003 + AluSx SINE Alu 1 294 -18 243 269 60 0 chr1 212239388 212239455 -30424898 + L2 LINE L2 3241 3311 -2 3361 51 42 5 chr1 212240070 212240498 -30423855 - MLT2A1 LTR ERVL 0 444 1 387 334 172 10 chr1 212240504 212240818 -30423535 + L2 LINE L2 121 485 -2829 194 387 9 9 chr1 212240967 212241078 -30423275 - MER5B DNA MER1_type -3 175 65 282 306 70 14 chr1 212241233 212241380 -30422973 + L1MDa LINE L1 426 642 -5898 4777 204 63 71 chr1 212241580 212241729 -30422624 + L1MDa LINE L1 990 1139 -5401 1937 150 0 10 chr1 212241729 212242023 -30422330 + AluJo SINE Alu 1 291 -21 4777 204 63 71 chr1 212242023 212242042 -30422311 + L1MDa LINE L1 1139 1157 -5383 2060 166 59 8 chr1 212242042 212242416 -30421937 - MSTD LTR MaLR 0 396 4 4777 204 63 71 chr1 212242416 212243823 -30420530 + L1MDa LINE L1 1157 2535 -4005 1912 175 0 0 chr1 212243823 212244120 -30420233 - AluJo SINE Alu -15 297 1 4777 204 63 71 chr1 212244120 212244464 -30419889 + L1MDa LINE L1 2535 2880 -3660 1742 166 3 14 chr1 212244464 212244759 -30419594 + AluJb SINE Alu 1 292 -20 195 42 0 0 chr1 212244759 212244783 -30419570 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 215 188 58 58 chr1 212244826 212244895 -30419458 + MIR SINE MIR 93 161 -101 207 261 0 22 chr1 212244887 212244933 -30419420 + L2 LINE L2 3210 3254 -18 * 218 313 64 0 chr1 212245282 212245405 -30418948 - MIR SINE MIR -52 156 45 2427 47 0 7 chr1 212245639 212245937 -30418416 - AluY SINE Alu -15 296 1 1201 321 113 40 chr1 212245968 212246388 -30417965 + L2 LINE L2 1842 2230 -1083 1698 172 95 21 chr1 212246388 212246726 -30417627 + MLT1A1 LTR MaLR 3 365 0 1201 321 113 40 chr1 212246726 212247393 -30416960 + L2 LINE L2 2230 3073 -240 2118 110 43 15 chr1 212247393 212247721 -30416632 + MER1B DNA MER1_type 1 337 0 1201 321 113 40 chr1 212247721 212247938 -30416415 + L2 LINE L2 3073 3273 -40 4317 113 8 0 chr1 212247938 212248600 -30415753 + L1MA3 LINE L1 5638 6304 -1 388 165 110 46 chr1 212249421 212249490 -30414863 + MLT1D LTR MaLR 3 78 -427 2127 140 28 22 chr1 212249490 212249593 -30414760 + MER47A DNA MER2_type 1 102 -2221 2514 137 28 37 chr1 212249593 212250024 -30414329 + MSTC LTR MaLR 1 427 -1 2127 140 28 22 chr1 212250024 212250284 -30414069 + MER47A DNA MER2_type 102 366 0 1740 194 60 32 chr1 212250288 212250691 -30413662 + MLT1D LTR MaLR 79 492 -13 3224 219 60 45 chr1 212250773 212251025 -30413328 - L1ME1 LINE L1 -7 6228 5981 1893 147 0 42 chr1 212251025 212251337 -30413016 + AluJo SINE Alu 1 299 -13 3224 219 60 45 chr1 212251337 212252405 -30411948 - L1ME1 LINE L1 -254 5981 4875 393 22 0 0 chr1 212252405 212252451 -30411902 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 3224 219 60 45 chr1 212252451 212252882 -30411471 - L1ME1 LINE L1 -1360 4875 4452 816 204 138 29 chr1 212252882 212253122 -30411231 + LTR40b LTR ERVL 197 462 0 1920 254 29 10 chr1 212253136 212253628 -30410725 - L1ME1 LINE L1 -5844 552 52 1795 157 7 10 chr1 212253918 212254223 -30410130 - AluJb SINE Alu -8 304 1 2236 85 0 35 chr1 212254711 212255027 -30409326 - AluSg SINE Alu -5 305 1 636 220 52 50 chr1 212255365 212255588 -30408765 - MIR SINE MIR -6 256 38 231 268 0 18 chr1 212256757 212256813 -30407540 - L2 LINE L2 -8 3305 3251 583 158 129 0 chr1 212258306 212258407 -30405946 + FLAM_C SINE Alu 2 115 -28 2433 129 3 3 chr1 212258407 212258764 -30405589 + THE1B LTR MaLR 2 358 -6 235 294 0 47 chr1 212258797 212258882 -30405471 + HAL1b LINE L1 834 914 -434 21 0 0 0 chr1 212258901 212258922 -30405431 + AT_rich Low_complexity Low_complexity 1 21 0 456 260 141 25 chr1 212258961 212259315 -30405038 + HAL1b LINE L1 954 1348 0 558 287 173 34 chr1 212260754 212261262 -30403091 + L1ME4a LINE L1 5494 6072 -49 349 316 66 16 chr1 212261332 212261563 -30402790 + L1MC2 LINE L1 5625 5864 -260 2266 101 3 0 chr1 212261795 212262091 -30402262 - AluSp SINE Alu -16 297 1 980 99 0 0 chr1 212262676 212262807 -30401546 + AluSg/x SINE Alu 160 290 -20 456 292 114 40 chr1 212264169 212264371 -30399982 - MIR SINE MIR -25 237 21 300 211 35 0 chr1 212265750 212265807 -30398546 + MER5A DNA MER1_type 48 106 -83 2415 47 0 7 chr1 212266368 212266666 -30397687 - AluY SINE Alu -15 296 1 1219 320 116 40 chr1 212266697 212267117 -30397236 + L2 LINE L2 1842 2229 -1084 1696 172 95 21 chr1 212267117 212267455 -30396898 + MLT1A1 LTR MaLR 3 365 0 1219 320 116 40 chr1 212267455 212268122 -30396231 + L2 LINE L2 2229 3074 -239 2142 110 43 15 chr1 212268122 212268450 -30395903 + MER1B DNA MER1_type 1 337 0 1219 320 116 40 chr1 212268450 212268667 -30395686 + L2 LINE L2 3074 3273 -40 4252 115 8 0 chr1 212268667 212269329 -30395024 + L1MA3 LINE L1 5638 6304 -1 354 145 72 0 chr1 212270149 212270218 -30394135 + MLT1D LTR MaLR 3 76 -429 2013 140 28 22 chr1 212270218 212270321 -30394032 + MER47A DNA MER2_type 1 102 -2221 2528 135 28 37 chr1 212270321 212270752 -30393601 + MSTC LTR MaLR 1 427 -1 2013 140 28 22 chr1 212270752 212271012 -30393341 + MER47A DNA MER2_type 102 366 0 1605 194 60 32 chr1 212271016 212271419 -30392934 + MLT1D LTR MaLR 79 492 -13 2971 219 59 44 chr1 212271501 212271753 -30392600 - L1ME1 LINE L1 -7 6228 5981 1936 150 0 42 chr1 212271753 212272066 -30392287 + AluJb SINE Alu 1 300 -12 2971 219 59 44 chr1 212272066 212273134 -30391219 - L1ME1 LINE L1 -254 5981 4875 357 24 0 0 chr1 212273134 212273176 -30391177 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 2971 219 59 44 chr1 212273176 212273607 -30390746 - L1ME1 LINE L1 -1360 4875 4452 732 204 138 29 chr1 212273607 212273847 -30390506 + LTR40b LTR ERVL 197 462 0 1753 256 29 10 chr1 212273861 212274353 -30390000 - L1ME1 LINE L1 -5844 552 52 1792 161 7 10 chr1 212274643 212274948 -30389405 - AluJb SINE Alu -8 304 1 2417 57 0 29 chr1 212275436 212275752 -30388601 - AluY SINE Alu -4 307 1 932 182 47 89 chr1 212276348 212276661 -30387692 - LTR41 LTR ERVL 0 795 475 938 203 0 0 chr1 212276670 212276833 -30387520 + FRAM SINE Alu 10 172 -4 915 242 42 14 chr1 212276918 212277203 -30387150 - LTR41 LTR ERVL -480 293 1 5167 104 1 5 chr1 212277369 212278122 -30386231 + L1PA8 LINE L1 5423 6172 0 816 229 57 0 chr1 212278198 212278390 -30385963 + MIR SINE MIR 2 204 -58 763 184 7 15 chr1 212278935 212279071 -30385282 - AluJo/FRAM SINE Alu -17 295 161 1296 148 7 79 chr1 212279071 212279349 -30385004 - AluSq SINE Alu -55 258 1 2154 123 0 0 chr1 212279461 212279761 -30384592 - AluSx SINE Alu -12 300 1 215 394 47 8 chr1 212280072 212280199 -30384154 - L2 LINE L2 0 3272 3141 544 285 152 55 chr1 212281722 212282330 -30382023 + L2 LINE L2 2637 3313 0 1699 147 0 83 chr1 212282573 212282899 -30381454 - AluJb SINE Alu -13 299 1 239 269 26 26 chr1 212283069 212283147 -30381206 - L2 LINE L2 -4 3268 3191 605 257 47 59 chr1 212284004 212284257 -30380096 - MIR SINE MIR -1 261 12 649 227 81 1 chr1 212284569 212284747 -30379606 + MIR SINE MIR 69 258 -4 198 338 68 0 chr1 212284866 212284940 -30379413 - MIR SINE MIR -74 188 110 2286 101 3 0 chr1 212285312 212285600 -30378753 - AluSp SINE Alu -24 289 1 385 175 12 52 chr1 212285693 212285883 -30378470 - MER5C DNA MER1_type -3 321 79 682 215 41 6 chr1 212285889 212286061 -30378292 + MER82 DNA MER2_type 1 178 -475 1719 191 3 13 chr1 212286071 212286386 -30377967 - AluJb SINE Alu 0 312 1 1751 157 3 34 chr1 212286475 212286769 -30377584 + AluJo SINE Alu 11 295 -17 1893 156 3 40 chr1 212286773 212287094 -30377259 + AluSx SINE Alu 1 309 -3 2413 98 0 0 chr1 212287141 212287448 -30376905 - AluSc SINE Alu -2 307 1 1839 176 7 0 chr1 212287465 212287754 -30376599 - AluJb SINE Alu -21 291 1 1768 235 42 5 chr1 212287848 212288295 -30376058 + MER82 DNA MER2_type 190 653 0 187 380 88 19 chr1 212288337 212288553 -30375800 + L2 LINE L2 2804 3034 -238 1002 183 6 11 chr1 212288635 212288810 -30375543 - FRAM SINE Alu -5 171 1 290 348 36 9 chr1 212289404 212289516 -30374837 + L2 LINE L2 3199 3313 0 3883 175 88 33 chr1 212289733 212290550 -30373803 - MER21B LTR ERV1 -1 862 1 336 207 53 93 chr1 212291892 212291991 -30372362 + MIR SINE MIR 81 174 -88 1786 173 37 0 chr1 212291991 212292286 -30372067 + AluJo SINE Alu 1 306 -6 336 207 53 93 chr1 212292286 212292336 -30372017 + MIR SINE MIR 174 224 -38 1026 272 12 8 chr1 212292606 212292860 -30371493 - MIR SINE MIR -2 260 6 484 261 152 22 chr1 212293026 212293250 -30371103 - MIR SINE MIR -5 257 9 193 418 0 14 chr1 212293553 212293699 -30370654 + L2 LINE L2 2824 2967 -305 777 178 89 0 chr1 212294297 212294466 -30369887 - MER3 DNA MER1_type 0 209 26 209 229 71 43 chr1 212301296 212301366 -30362987 - L2 LINE L2 -209 3063 2992 761 268 54 0 chr1 212301449 212301654 -30362699 + MIR SINE MIR 1 216 -46 423 148 123 0 chr1 212301654 212301735 -30362618 + MER96 DNA MER1_type? 79 169 -6 1442 219 62 17 chr1 212301749 212302170 -30362183 - LTR40c LTR ERVL -5 460 21 205 238 24 0 chr1 212302218 212302260 -30362093 - L3 LINE CR1 -1 1576 1534 1293 150 52 58 chr1 212302265 212302591 -30361762 - MER33 DNA MER1_type 0 324 1 2374 94 7 0 chr1 212303681 212303990 -30360363 - AluSx SINE Alu -1 311 1 2465 85 0 0 chr1 212305021 212305327 -30359026 + AluSg SINE Alu 1 306 -4 2448 99 0 0 chr1 212306355 212306667 -30357686 - AluSx SINE Alu 0 312 1 490 209 206 25 chr1 212306801 212307116 -30357237 - HAL1 LINE L1 -130 2377 2006 459 271 29 43 chr1 212307182 212307392 -30356961 - HAL1 LINE L1 -623 1884 1678 837 240 76 57 chr1 212307443 212307826 -30356527 + MLT1C LTR MaLR 76 465 -2 387 237 116 52 chr1 212307830 212308003 -30356350 - HAL1 LINE L1 -915 1592 1409 24 0 0 0 chr1 212308031 212308055 -30356298 + AT_rich Low_complexity Low_complexity 1 24 0 475 219 0 9 chr1 212308687 212308801 -30355552 - L1PA16 LINE L1 -5 6161 6049 245 313 45 83 chr1 212308825 212309138 -30355215 - L2 LINE L2 -650 2664 2364 414 53 0 0 chr1 212309591 212309648 -30354705 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 761 268 54 0 chr1 212309736 212309941 -30354412 + MIR SINE MIR 1 216 -46 423 148 123 0 chr1 212309941 212310022 -30354331 + MER96 DNA MER1_type? 79 169 -6 550 176 20 0 chr1 212310027 212310129 -30354224 - LTR40a LTR ERVL -8 511 408 1821 117 0 88 chr1 212310350 212310667 -30353686 - AluSx SINE Alu -23 289 1 598 234 6 4 chr1 212311452 212311636 -30352717 + MIR SINE MIR 10 262 0 1793 139 24 27 chr1 212312638 212312932 -30351421 - AluJb SINE Alu -5 307 15 252 273 83 8 chr1 212313227 212313359 -30350994 - L1MC4 LINE L1 -372 7670 7529 331 232 54 0 chr1 212313412 212313524 -30350829 - L1MC5 LINE L1 -544 7417 7300 288 290 82 19 chr1 212313554 212313877 -30350476 - L1MC5 LINE L1 -440 7368 7048 2371 101 0 16 chr1 212313960 212314276 -30350077 - AluSq SINE Alu -2 311 1 700 237 64 8 chr1 212314297 212314533 -30349820 - L1MC4 LINE L1 -981 7061 6813 201 159 0 0 chr1 212314929 212314973 -30349380 + T-rich Low_complexity Low_complexity 1 44 0 3468 43 0 0 chr1 212314974 212315392 -30348961 - L1PA3 LINE L1 -3 6152 5735 28 0 0 0 chr1 212316462 212316490 -30347863 + AT_rich Low_complexity Low_complexity 1 28 0 490 314 52 24 chr1 212317040 212317250 -30347103 + MIR SINE MIR 3 218 -44 242 271 36 78 chr1 212317473 212317639 -30346714 - HAL1 LINE L1 -17 2490 2332 6002 165 180 8 chr1 212317639 212318981 -30345372 - MER52A LTR ERV1 0 1755 183 302 181 4 13 chr1 212319420 212319498 -30344855 - MER52A LTR ERV1 -1218 71 1 466 275 203 23 chr1 212319524 212320052 -30344301 - HAL1 LINE L1 -194 2313 1691 2476 240 93 45 chr1 212320136 212320934 -30343419 - HAL1 LINE L1 -645 1862 997 2180 127 0 3 chr1 212320934 212321234 -30343119 + AluSq SINE Alu 1 299 -14 2476 240 93 45 chr1 212321234 212321510 -30342843 - HAL1 LINE L1 -1510 997 736 919 260 145 40 chr1 212321523 212322130 -30342223 - HAL1 LINE L1 -1828 679 9 1942 140 20 3 chr1 212322222 212322515 -30341838 - AluSx SINE Alu -14 298 1 688 228 84 36 chr1 212322854 212323021 -30341332 - MER5A DNA MER1_type -14 175 1 2502 57 0 3 chr1 212323292 212323588 -30340765 + AluY SINE Alu 1 295 -16 1731 136 0 75 chr1 212324030 212324325 -30340028 + AluJb SINE Alu 1 273 -39 23 0 0 0 chr1 212324843 212324866 -30339487 + AT_rich Low_complexity Low_complexity 1 23 0 446 273 100 0 chr1 212324990 212325100 -30339253 + L2 LINE L2 3151 3271 -1 587 249 121 18 chr1 212325735 212325900 -30338453 + MIR SINE MIR 59 240 -22 189 107 0 0 chr1 212325908 212325936 -30338417 + (TTA)n Simple_repeat Simple_repeat 2 29 0 279 177 0 0 chr1 212326364 212326426 -30337927 + A-rich Low_complexity Low_complexity 1 62 0 2541 55 0 6 chr1 212326432 212326743 -30337610 + AluY SINE Alu 1 309 -2 778 201 40 6 chr1 212327064 212327238 -30337115 + AluJo SINE Alu 105 284 -28 1030 88 0 22 chr1 212327252 212327389 -30336964 + AluSq SINE Alu 1 134 -179 1999 86 0 21 chr1 212327389 212327668 -30336685 + AluSx SINE Alu 1 273 -39 1068 141 0 0 chr1 212327719 212327908 -30336445 + AluSq SINE Alu 130 318 0 1606 147 52 25 chr1 212328681 212328967 -30335386 + AluJo SINE Alu 1 294 -18 201 327 0 0 chr1 212329068 212329120 -30335233 + L2 LINE L2 3127 3178 -94 222 363 73 2 chr1 212329206 212329341 -30335012 - MIR SINE MIR -47 161 16 1089 188 4 43 chr1 212329678 212329933 -30334420 - L1MB1 LINE L1 -1 6167 5923 1262 43 37 0 chr1 212329933 212330093 -30334260 - L1PA11 LINE L1 -3 6171 6005 232 299 171 26 chr1 212330434 212330551 -30333802 - MIR3 SINE MIR -61 147 14 344 291 9 27 chr1 212332211 212332321 -30332032 + MIR SINE MIR 79 186 -76 327 274 7 0 chr1 212332357 212332492 -30331861 + (TTA)n Simple_repeat Simple_repeat 3 138 0 256 195 0 0 chr1 212332639 212332680 -30331673 + MER5B DNA MER1_type 5 45 -133 2229 82 0 7 chr1 212332680 212332973 -30331380 - AluSp SINE Alu -22 291 1 293 277 123 8 chr1 212333526 212333656 -30330697 + MIR SINE MIR 10 154 -108 1055 229 41 75 chr1 212334040 212334576 -30329777 + L1MC5 LINE L1 7396 7913 -48 367 258 133 56 chr1 212334588 212334821 -30329532 - L2 LINE L2 -1478 1836 1586 2349 55 7 0 chr1 212335235 212335528 -30328825 + AluY SINE Alu 1 295 -16 1731 136 0 75 chr1 212335970 212336265 -30328088 + AluJb SINE Alu 1 273 -39 23 0 0 0 chr1 212336782 212336805 -30327548 + AT_rich Low_complexity Low_complexity 1 23 0 446 273 100 0 chr1 212336929 212337039 -30327314 + L2 LINE L2 3151 3271 -1 24 0 0 0 chr1 212338404 212338428 -30325925 + AT_rich Low_complexity Low_complexity 1 24 0 2516 66 0 19 chr1 212338513 212338830 -30325523 - AluY SINE Alu 0 311 1 23 0 0 0 chr1 212338860 212338883 -30325470 + AT_rich Low_complexity Low_complexity 1 23 0 1761 154 7 7 chr1 212340349 212340642 -30323711 - AluJb SINE Alu -14 298 6 790 188 45 0 chr1 212342321 212342497 -30321856 + MER3 DNA MER1_type 5 188 -21 189 0 0 0 chr1 212343098 212343119 -30321234 + (CA)n Simple_repeat Simple_repeat 2 22 0 366 301 131 15 chr1 212343820 212344026 -30320327 + MIR SINE MIR 23 252 -10 413 310 101 19 chr1 212344169 212344427 -30319926 + L1ME4a LINE L1 5620 5898 -223 639 263 39 19 chr1 212344942 212345147 -30319206 - MIR SINE MIR 0 262 54 341 315 9 0 chr1 212347362 212347473 -30316880 - MER94 DNA DNA -22 112 1 28 0 0 0 chr1 212347692 212347720 -30316633 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 212347872 212347907 -30316446 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 212348825 212348848 -30315505 + AT_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr1 212349435 212349462 -30314891 + (GA)n Simple_repeat Simple_repeat 2 28 0 356 280 93 8 chr1 212349516 212349634 -30314719 - MIR SINE MIR -133 129 2 494 218 32 26 chr1 212350650 212350806 -30313547 + MER103 DNA DNA 1 157 -9 678 228 123 0 chr1 212350860 212351022 -30313331 + MIR SINE MIR 10 191 -71 5661 83 7 4 chr1 212352297 212353142 -30311211 - L1MA1 LINE L1 -225 6077 5228 1095 202 26 31 chr1 212353258 212353550 -30310803 + MER33 DNA MER1_type 1 264 -2321 1178 170 192 38 chr1 212353550 212353920 -30310433 - MSTC LTR MaLR -1 427 1 1095 202 26 31 chr1 212353920 212353980 -30310373 + MER33 DNA MER1_type 264 323 -1 190 286 113 75 chr1 212354123 212354224 -30310129 - MIR SINE MIR -1 261 152 2441 60 0 10 chr1 212354224 212354524 -30309829 + AluSc SINE Alu 1 297 -12 190 286 113 75 chr1 212354524 212354555 -30309798 - MIR SINE MIR -110 152 124 2402 84 0 13 chr1 212354759 212355067 -30309286 + AluY SINE Alu 1 304 -7 2412 73 0 3 chr1 212355793 212356096 -30308257 - AluY SINE Alu -9 302 1 2007 123 48 0 chr1 212356098 212356390 -30307963 - AluSx SINE Alu -6 306 1 208 235 163 10 chr1 212358110 212358208 -30306145 - MIR SINE MIR -11 251 139 22 0 0 0 chr1 212358500 212358522 -30305831 + AT_rich Low_complexity Low_complexity 1 22 0 290 255 32 32 chr1 212359305 212359399 -30304954 - MER5A DNA MER1_type -73 116 23 1849 167 9 83 chr1 212359670 212360090 -30304263 + MLT1B LTR MaLR 1 389 -1 1746 202 31 8 chr1 212360421 212360777 -30303576 + MLT1A1 LTR MaLR 2 365 0 216 0 0 0 chr1 212360951 212360975 -30303378 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 283 258 11 65 chr1 212361219 212361312 -30303041 - L2 LINE L2 0 3313 3226 * 326 333 68 8 chr1 212361311 212361428 -30302925 - MIR3 SINE MIR -34 174 51 2063 108 67 25 chr1 212361520 212361880 -30302473 - THE1C LTR MaLR 0 375 1 417 70 0 0 chr1 212362419 212362476 -30301877 + (TA)n Simple_repeat Simple_repeat 2 58 0 295 242 105 40 chr1 212363698 212363822 -30300531 + MER69A DNA AcHobo 1 132 -45 254 253 13 0 chr1 212364216 212364295 -30300058 + MER116 DNA Mariner 1 80 0 1478 163 23 20 chr1 212364440 212364741 -30299612 - MER33 DNA MER1_type -22 302 1 399 258 104 43 chr1 212364741 212364904 -30299449 + MIR SINE MIR 59 231 -31 225 304 76 0 chr1 212365386 212365465 -30298888 - MIR SINE MIR -109 153 69 240 35 0 0 chr1 212368685 212368714 -30295639 + (TTG)n Simple_repeat Simple_repeat 2 30 0 237 178 0 0 chr1 212368956 212369001 -30295352 + (CAT)n Simple_repeat Simple_repeat 1 45 0 365 93 0 0 chr1 212369941 212369995 -30294358 + MADE1 DNA Mariner 27 80 0 247 213 0 0 chr1 212370381 212370428 -30293925 - L2 LINE L2 0 3272 3226 2066 130 17 0 chr1 212374265 212374566 -30289787 + AluSx SINE Alu 1 306 -6 272 286 176 41 chr1 212375356 212375534 -30288819 - MIR SINE MIR -41 221 25 7493 37 1 0 chr1 212375960 212377502 -30286851 + L1PA5 LINE L1 4607 6148 -6 779 190 35 40 chr1 212377517 212377743 -30286610 + L1MB4 LINE L1 5952 6176 -4 205 280 0 0 chr1 212377994 212378044 -30286309 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 311 342 168 10 chr1 212378975 212379171 -30285182 - L3 LINE CR1 -3 1574 1348 2204 110 0 0 chr1 212379334 212379624 -30284729 + AluY SINE Alu 1 290 -21 207 0 0 0 chr1 212379627 212379650 -30284703 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 485 251 143 89 chr1 212379825 212380140 -30284213 - L3 LINE CR1 -381 1196 865 938 165 44 6 chr1 212380221 212380403 -30283950 - MER5A DNA MER1_type 0 189 1 598 321 73 13 chr1 212380409 212380711 -30283642 - L3 LINE CR1 -711 866 547 1294 217 0 22 chr1 212381388 212381702 -30282651 + AluSc SINE Alu 3 309 0 263 338 46 11 chr1 212381788 212381911 -30282442 - MIR3 SINE MIR -25 183 56 251 245 194 20 chr1 212382199 212382297 -30282056 + L2 LINE L2 3157 3271 -1 287 311 74 7 chr1 212383713 212383861 -30280492 + L1ME4a LINE L1 5621 5778 -343 337 248 7 44 chr1 212383938 212384075 -30280278 + L1MB8 LINE L1 6045 6176 -2 371 265 80 20 chr1 212384141 212384292 -30280061 + L1ME4a LINE L1 5957 6116 -5 661 292 64 13 chr1 212384440 212384673 -30279680 - MIR SINE MIR -14 248 4 207 368 148 13 chr1 212386179 212386334 -30278019 + L2 LINE L2 3089 3264 -8 443 282 19 45 chr1 212386469 212386625 -30277728 - MIR SINE MIR -56 206 55 246 232 155 35 chr1 212386807 212386949 -30277404 - L1MC5 LINE L1 -48 7913 7755 228 35 0 0 chr1 212389534 212389563 -30274790 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2061 104 4 0 chr1 212389563 212389842 -30274511 - AluSx SINE Alu -32 280 1 986 224 24 0 chr1 212390224 212390434 -30273919 + MER20 DNA MER1_type 5 219 0 1551 135 3 107 chr1 212390509 212390836 -30273517 + AluJb SINE Alu 5 297 -15 227 292 31 88 chr1 212390882 212391074 -30273279 + L2 LINE L2 3129 3309 -4 258 32 0 0 chr1 212393683 212393714 -30270639 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1723 154 3 67 chr1 212394405 212394717 -30269636 + AluJo SINE Alu 1 292 -20 3905 258 83 28 chr1 212394826 212396088 -30268265 + ERVL LTR ERVL 3654 4985 -779 968 269 103 19 chr1 212396095 212396407 -30267946 + MLT2F LTR ERVL 322 659 -4 600 269 113 0 chr1 212396419 212396605 -30267748 + MIR SINE MIR 56 262 0 193 229 21 21 chr1 212396638 212396686 -30267667 - MIR3 SINE MIR -4 204 157 353 345 29 53 chr1 212397375 212397546 -30266807 + MIR SINE MIR 46 212 -50 1729 198 31 26 chr1 212397577 212397961 -30266392 + MER58D DNA MER1_type 1 386 0 23 0 0 0 chr1 212398245 212398268 -30266085 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 212399161 212399183 -30265170 + AT_rich Low_complexity Low_complexity 1 22 0 575 285 58 14 chr1 212400553 212400760 -30263593 + MIR SINE MIR 13 228 -34 1228 174 17 93 chr1 212402150 212402330 -30262023 - MER33 DNA MER1_type -2266 319 127 1724 164 145 16 chr1 212402330 212402709 -30261644 - MSTA LTR MaLR 0 428 1 2519 78 0 0 chr1 212402719 212403026 -30261327 - AluSc SINE Alu -2 307 1 1228 174 17 93 chr1 212403026 212403179 -30261174 - MER33 DNA MER1_type -2467 118 1 314 278 43 26 chr1 212403224 212403339 -30261014 - L3b LINE CR1 -155 1428 1312 713 292 28 56 chr1 212403529 212403885 -30260468 - L3 LINE CR1 -794 783 438 259 338 22 29 chr1 212404890 212405026 -30259327 - L3 LINE CR1 -108 1469 1335 2078 132 0 0 chr1 212407117 212407458 -30256895 - AluSg SINE Alu 0 341 1 180 0 0 0 chr1 212407461 212407481 -30256872 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1975 121 3 47 chr1 212407483 212407781 -30256572 - AluSc SINE Alu -24 285 1 2102 120 37 0 chr1 212408348 212408647 -30255706 + AluSx SINE Alu 1 310 -2 1010 260 48 0 chr1 212408937 212409187 -30255166 - MIR SINE MIR 0 262 1 1866 158 0 7 chr1 212409280 212409604 -30254749 + AluSx SINE Alu 1 322 0 376 308 91 36 chr1 212409727 212409897 -30254456 - L1ME4a LINE L1 -2 6119 5960 6551 127 38 44 chr1 212409897 212411134 -30253219 + Tigger3b DNA MER2_type 2 1231 0 376 308 91 36 chr1 212411134 212411271 -30253082 - L1ME4a LINE L1 -161 5960 5795 1088 68 0 8 chr1 212411314 212411446 -30252907 - AluY SINE Alu -180 131 1 21 0 0 0 chr1 212411467 212411488 -30252865 + AT_rich Low_complexity Low_complexity 1 21 0 180 376 106 16 chr1 212411625 212411814 -30252539 + L2 LINE L2 2772 2977 -337 2310 98 0 22 chr1 212412820 212413136 -30251217 + AluSc SINE Alu 1 309 0 263 338 46 11 chr1 212413221 212413344 -30251009 - MIR3 SINE MIR -25 183 56 251 245 194 20 chr1 212413632 212413730 -30250623 + L2 LINE L2 3157 3271 -1 651 306 35 75 chr1 212415162 212415613 -30248740 + L2 LINE L2 1614 2046 -1268 735 242 70 74 chr1 212415678 212415963 -30248390 + L2 LINE L2 3030 3313 0 572 126 8 0 chr1 212416109 212416228 -30248125 + (TTCC)n Simple_repeat Simple_repeat 2 121 0 2291 115 0 3 chr1 212416228 212416541 -30247812 - AluSx SINE Alu 0 312 1 635 219 0 15 chr1 212416548 212416685 -30247668 + MER58B DNA MER1_type 207 341 0 791 288 19 5 chr1 212416708 212416920 -30247433 + MIR SINE MIR 2 216 -46 691 172 92 18 chr1 212417741 212417904 -30246449 - FRAM SINE Alu -6 170 1 455 297 18 126 chr1 212418028 212418361 -30245992 + L2 LINE L2 2941 3237 -35 279 313 12 0 chr1 212418431 212418514 -30245839 - L2 LINE L2 -4 3309 3226 409 296 148 6 chr1 212419193 212419355 -30244998 - MIR3 SINE MIR -3 205 21 3741 129 14 8 chr1 212420751 212421372 -30242981 - MER39B LTR ERV1 -28 625 1 204 97 0 0 chr1 212421949 212421980 -30242373 + (GA)n Simple_repeat Simple_repeat 2 32 0 252 239 14 14 chr1 212422377 212422448 -30241905 + (TA)n Simple_repeat Simple_repeat 1 71 0 338 269 42 25 chr1 212422690 212422809 -30241544 - MIR SINE MIR 0 262 142 32 0 0 0 chr1 212422855 212422887 -30241466 + AT_rich Low_complexity Low_complexity 1 32 0 235 294 57 42 chr1 212422912 212423027 -30241326 - MIR SINE MIR -71 137 12 2151 102 0 0 chr1 212425433 212425750 -30238603 + AluSx SINE Alu 1 317 0 360 242 20 13 chr1 212425796 212425949 -30238404 + (TATATG)n Simple_repeat Simple_repeat 6 159 0 576 318 47 35 chr1 212426021 212426279 -30238074 + MIR SINE MIR 2 262 0 204 125 0 0 chr1 212426319 212426351 -30238002 + (TCCCC)n Simple_repeat Simple_repeat 4 35 0 276 336 102 26 chr1 212427253 212427479 -30236874 - L3 LINE CR1 -788 789 547 180 342 51 13 chr1 212427688 212427767 -30236586 + MIR SINE MIR 109 190 -72 23 54 0 0 chr1 212428609 212428646 -30235707 + AT_rich Low_complexity Low_complexity 1 37 0 304 300 100 70 chr1 212428762 212428992 -30235361 - L2 LINE L2 -9 3263 3027 1741 171 19 19 chr1 212429087 212429441 -30234912 + AluJb SINE Alu 1 354 0 1978 191 23 30 chr1 212429519 212429989 -30234364 - MLT1C LTR MaLR 0 467 1 323 221 138 41 chr1 212431225 212431370 -30232983 + MER5A DNA MER1_type 31 189 0 1346 174 113 22 chr1 212431739 212432050 -30232303 + MER58B DNA MER1_type 2 340 -1 2061 97 10 39 chr1 212432126 212432436 -30231917 + AluSg1 SINE Alu 1 301 -8 197 300 146 18 chr1 212432538 212432648 -30231705 - L2 LINE L2 -3 3269 3146 476 303 162 29 chr1 212433882 212434404 -30229949 + L2 LINE L2 2590 3192 -121 256 224 47 12 chr1 212434452 212434537 -30229816 - L1M4 LINE L1 -362 5812 5725 263 269 0 48 chr1 212434663 212434747 -30229606 - L1M4 LINE L1 -2257 5528 5446 1091 170 0 87 chr1 212435625 212435854 -30228499 - AluJb SINE Alu -103 209 1 1052 179 49 9 chr1 212437079 212437437 -30226916 - MLT1D LTR MaLR -103 402 1 361 132 44 0 chr1 212437583 212437651 -30226702 - HsTC2 DNA Tc2 -5 1893 1823 230 234 47 47 chr1 212437685 212437792 -30226561 + MLT1H LTR MaLR 3 109 -440 287 186 0 0 chr1 212438001 212438060 -30226293 - HsTC2 DNA Tc2 -1838 60 2 28 0 0 0 chr1 212438425 212438453 -30225900 + AT_rich Low_complexity Low_complexity 1 28 0 221 235 341 15 chr1 212439010 212439142 -30225211 - MIR SINE MIR -44 218 44 441 245 10 29 chr1 212441752 212441854 -30222499 - L2 LINE L2 0 3313 3214 1734 115 4 4 chr1 212442238 212442481 -30221872 - AluSx SINE Alu -69 243 1 2980 144 33 2 chr1 212442481 212443031 -30221322 - L1MB3 LINE L1 -224 5959 5393 267 180 0 20 chr1 212443415 212443465 -30220888 - tRNA-Arg-AGG tRNA tRNA -26 50 2 2030 132 7 3 chr1 212444468 212444757 -30219596 - AluSx SINE Alu -11 301 12 967 186 0 17 chr1 212444777 212444954 -30219399 - AluSc SINE Alu -1 308 135 253 276 11 35 chr1 212445635 212445722 -30218631 + MIR SINE MIR 175 259 -3 281 306 81 19 chr1 212446153 212446255 -30218098 + L1MEd LINE L1 1330 1424 -5106 1084 148 124 0 chr1 212446255 212446465 -30217888 + MER46A DNA MER2_type 1 236 0 281 306 81 19 chr1 212446465 212446571 -30217782 + L1MEd LINE L1 1424 1551 -4979 24 53 0 0 chr1 212446638 212446676 -30217677 + AT_rich Low_complexity Low_complexity 1 38 0 467 298 59 109 chr1 212446879 212446937 -30217416 + L1MEd LINE L1 1724 1783 -4938 845 245 0 0 chr1 212446937 212447100 -30217253 - FAM SINE Alu -12 163 1 467 298 59 109 chr1 212447100 212447481 -30216872 + L1MEd LINE L1 1783 2141 -4580 440 260 308 16 chr1 212447652 212447902 -30216451 - MER5C DNA MER1_type -1 323 1 471 255 11 6 chr1 212448079 212448291 -30216062 + L1MEd LINE L1 2471 2684 -3856 1822 163 0 17 chr1 212448305 212448600 -30215753 + AluJb SINE Alu 1 290 -22 387 171 13 0 chr1 212448667 212448743 -30215610 + MLT2D LTR ERVL 1 77 -337 311 311 121 23 chr1 212450479 212450611 -30213742 - MIR SINE MIR -72 190 46 334 296 9 26 chr1 212450873 212450988 -30213365 + L2 LINE L2 3151 3263 -9 909 261 27 31 chr1 212451165 212451426 -30212927 - MIR SINE MIR -1 261 2 811 323 71 39 chr1 212451556 212452137 -30212216 - L2 LINE L2 -19 3294 2702 782 236 190 19 chr1 212452728 212453038 -30211315 + L2 LINE L2 2951 3313 0 2436 43 3 29 chr1 212454581 212454927 -30209426 - L1PA5 LINE L1 -49 6105 5769 30902 51 2 0 chr1 212454943 212459815 -30204538 - L1PA4 LINE L1 0 6155 1273 272 286 176 41 chr1 212460360 212460538 -30203815 - MIR SINE MIR -41 221 25 213 175 0 0 chr1 212461111 212461151 -30203202 + (TA)n Simple_repeat Simple_repeat 2 41 0 737 264 14 32 chr1 212461590 212461810 -30202543 - L3b LINE CR1 -229 1354 1139 2430 150 110 22 chr1 212462068 212462668 -30201685 + Tigger3(Golem) DNA MER2_type 2376 3028 -1 1501 271 272 14 chr1 212462669 212463519 -30200834 - L2 LINE L2 -779 2535 1467 1026 255 138 17 chr1 212463531 212463892 -30200461 - L2 LINE L2 -2220 1094 690 727 296 68 34 chr1 212464059 212464353 -30200000 - L2 LINE L2 -2611 703 400 187 270 108 36 chr1 212468782 212468893 -30195460 - MIR3 SINE MIR -88 120 2 534 345 67 14 chr1 212468948 212469171 -30195182 + MIR SINE MIR 22 256 -6 224 355 37 0 chr1 212470862 212470969 -30193384 + MIR SINE MIR 42 152 -56 379 289 160 4 chr1 212471216 212471441 -30192912 + L1 LINE L1 3076 3335 -2811 654 202 10 87 chr1 212471449 212471657 -30192696 + MIR SINE MIR 71 262 0 461 259 26 49 chr1 212471703 212471969 -30192384 - L1MEc LINE L1 -2923 3292 3033 872 260 99 71 chr1 212471990 212472459 -30191894 + MLT1G1 LTR MaLR 10 545 -50 1731 136 35 21 chr1 212472459 212472746 -30191607 - L1PB4 LINE L1 -1 6155 5865 872 260 99 71 chr1 212472746 212472799 -30191554 + MLT1G1 LTR MaLR 545 595 0 1678 153 85 3 chr1 212473133 212473473 -30190880 - Charlie1 DNA MER1_type -1 2760 2393 945 144 75 17 chr1 212473490 212473663 -30190690 - Charlie1 DNA MER1_type -800 1961 1779 1612 203 20 0 chr1 212473665 212473966 -30190387 + L1M4b LINE L1 12 318 -6541 1037 156 5 21 chr1 212473968 212474154 -30190199 + L1M4 LINE L1 5323 5505 -679 309 329 70 0 chr1 212474696 212474839 -30189514 - MIR SINE MIR -55 207 55 428 255 135 7 chr1 212477734 212477875 -30186478 - MIR SINE MIR -2 260 102 1698 205 77 46 chr1 212478191 212478515 -30185838 - L1ME1 LINE L1 -5 6161 5818 2235 97 7 10 chr1 212478515 212478815 -30185538 - AluSq SINE Alu -14 299 1 1698 205 77 46 chr1 212478815 212478944 -30185409 - L1ME1 LINE L1 -348 5818 5694 5104 234 95 45 chr1 212478975 212479030 -30185323 - L1MEc LINE L1 -4592 1804 1753 2180 136 0 0 chr1 212479030 212479338 -30185015 - AluSx SINE Alu -4 308 1 5104 234 95 45 chr1 212479338 212480738 -30183615 - L1MEc LINE L1 -4643 1753 250 2441 179 38 20 chr1 212480738 212481185 -30183168 + MSTB2 LTR MaLR 3 457 0 5104 234 95 45 chr1 212481185 212481411 -30182942 - L1MEc LINE L1 -6146 250 37 2944 237 76 41 chr1 212482724 212484539 -30179814 + L1M4b LINE L1 2028 3900 -3057 2318 76 0 3 chr1 212484540 212484831 -30179522 + AluSx SINE Alu 1 290 -22 344 80 0 20 chr1 212484846 212484896 -30179457 + 5S rRNA rRNA 2 50 -71 603 135 45 0 chr1 212484899 212484988 -30179365 - AluJb SINE Alu -194 118 26 730 277 110 29 chr1 212485009 212485406 -30178947 - L1MC5 LINE L1 -373 7666 7260 832 243 46 14 chr1 212485949 212486167 -30178186 + MIR SINE MIR 37 261 -1 688 214 126 28 chr1 212486823 212487038 -30177315 + L1ME3A LINE L1 5934 6169 -1 248 241 35 78 chr1 212487424 212487540 -30176813 + MLT1L LTR MaLR 505 615 0 4859 124 25 11 chr1 212488030 212488764 -30175589 - L1P3 LINE L1 -5710 751 8 2156 107 3 7 chr1 212489310 212489610 -30174743 - AluSx SINE Alu -13 299 1 1516 191 24 14 chr1 212489611 212489905 -30174448 - AluJb SINE Alu -15 297 1 2152 167 21 49 chr1 212490263 212490729 -30173624 + L1MB7 LINE L1 5685 6137 -47 7246 32 2 0 chr1 212490830 212492286 -30172067 - L1PA3 LINE L1 -179 5976 4518 2322 111 0 3 chr1 212492287 212492594 -30171759 - AluSg SINE Alu -4 306 1 661 237 8 0 chr1 212492856 212492987 -30171366 + FLAM_C SINE Alu 2 133 -10 186 260 0 20 chr1 212494942 212494992 -30169361 + L2 LINE L2 3223 3271 -1 23 0 0 0 chr1 212496364 212496387 -30167966 + AT_rich Low_complexity Low_complexity 1 23 0 702 103 47 9 chr1 212496387 212496494 -30167859 - HY1 scRNA scRNA -1 111 1 344 298 105 0 chr1 212497243 212497367 -30166986 + L2 LINE L2 3175 3311 -2 189 298 0 0 chr1 212497503 212497550 -30166803 + L3 LINE CR1 1524 1570 -7 277 243 189 18 chr1 212497558 212497669 -30166684 - L2 LINE L2 0 3313 3184 4277 77 11 5 chr1 212497775 212498385 -30165968 - L1MA1 LINE L1 -459 5843 5228 1252 204 31 34 chr1 212498530 212498793 -30165560 + MER33 DNA MER1_type 1 264 -2321 1348 170 192 38 chr1 212498793 212499163 -30165190 - MSTC LTR MaLR -1 427 1 1252 204 31 34 chr1 212499163 212499223 -30165130 + MER33 DNA MER1_type 264 323 -1 2449 60 0 10 chr1 212499468 212499767 -30164586 + AluSc SINE Alu 1 296 -13 2185 95 0 14 chr1 212500006 212500313 -30164040 + AluSc SINE Alu 5 307 0 2073 132 0 0 chr1 212500316 212500657 -30163696 + AluSg SINE Alu 1 341 0 374 326 54 0 chr1 212502117 212502246 -30162107 - L2 LINE L2 0 3272 3137 228 274 95 21 chr1 212502333 212502428 -30161925 - MIR SINE MIR -149 113 12 2134 97 0 4 chr1 212502584 212502863 -30161490 + AluY SINE Alu 21 298 -13 407 282 40 75 chr1 212503060 212503111 -30161242 - MLT1L LTR MaLR -107 404 353 1712 197 14 0 chr1 212503111 212503405 -30160948 - AluJo SINE Alu -14 298 1 407 282 40 75 chr1 212503405 212503774 -30160579 - MLT1L LTR MaLR -158 353 1 181 209 186 0 chr1 212504309 212504352 -30160001 + L2 LINE L2 3206 3256 -16 2488 123 6 3 chr1 212504400 212504749 -30159604 - THE1B LTR MaLR 0 364 15 2273 99 3 0 chr1 212504855 212505157 -30159196 + AluY SINE Alu 1 303 -8 1585 98 0 0 chr1 212505315 212505518 -30158835 + AluY SINE Alu 91 293 -18 953 267 129 19 chr1 212505698 212506110 -30158243 - L2 LINE L2 0 3313 2857 2193 189 17 12 chr1 212506143 212506555 -30157798 - LOR1b LTR ERV1 0 461 48 2934 98 86 7 chr1 212506570 212507011 -30157342 - L1PA13 LINE L1 0 6163 5688 2083 151 62 14 chr1 212507011 212507369 -30156984 + THE1C LTR MaLR 1 375 0 7112 119 47 17 chr1 212507369 212508474 -30155879 + THE1C-int LTR MaLR 1 1138 -442 2520 73 0 6 chr1 212508474 212508803 -30155550 - pTR5 LTR ERV1 -2046 392 66 310 276 10 0 chr1 212508803 212508901 -30155452 - LTR30 LTR ERV1 -80 642 544 349 100 0 0 chr1 212508901 212508951 -30155402 - pTR5 LTR ERV1 -413 2025 1976 716 101 55 0 chr1 212508951 212509060 -30155293 + THE1-int LTR MaLR 1419 1533 -47 1954 168 42 14 chr1 212509061 212509419 -30154934 - THE1C LTR MaLR -7 368 1 372 84 99 14 chr1 212509419 212509490 -30154863 - THE1C-int LTR MaLR 0 1651 1575 818 62 0 144 chr1 212509494 212509640 -30154713 + Charlie3 DNA MER1_type 2582 2706 -4 410 241 48 21 chr1 212509692 212509837 -30154516 + L1ME4a LINE L1 5971 6119 -2 395 254 26 26 chr1 212510412 212510526 -30153827 - L2 LINE L2 -513 2801 2688 1074 128 85 0 chr1 212511844 212512008 -30152345 + AluSg/x SINE Alu 128 305 -5 307 264 155 65 chr1 212512187 212512306 -30152047 - MER5B DNA MER1_type -2 176 38 1604 109 45 115 chr1 212512306 212512637 -30151716 - AluYb8 SINE Alu -10 308 1 307 264 155 65 chr1 212512637 212512672 -30151681 - MER5B DNA MER1_type -140 38 8 2066 121 0 40 chr1 212513080 212513402 -30150951 - AluSx SINE Alu -3 309 1 2172 111 40 0 chr1 212514130 212514428 -30149925 + AluSg SINE Alu 1 310 0 625 186 151 58 chr1 212514736 212514833 -30149520 - MER5A DNA MER1_type -1 188 101 2180 103 7 3 chr1 212514833 212515135 -30149218 - AluSc SINE Alu -6 303 1 625 186 151 58 chr1 212515135 212515209 -30149144 - MER5A DNA MER1_type -88 101 1 2211 111 0 3 chr1 212515704 212516002 -30148351 + AluSg SINE Alu 1 297 -13 343 308 75 7 chr1 212517803 212517949 -30146404 - MIR SINE MIR -55 207 52 217 306 69 0 chr1 212519490 212519562 -30144791 + MIR SINE MIR 32 108 -100 * 261 272 131 134 chr1 212519561 212520010 -30144343 - L2 LINE L2 0 3272 2825 2020 149 3 0 chr1 212521130 212521432 -30142921 - AluSx SINE Alu -9 303 1 984 167 0 0 chr1 212522303 212522483 -30141870 + MER53 DNA DNA 1 180 -9 2553 65 3 0 chr1 212522918 212523225 -30141128 - AluY SINE Alu -3 308 1 1113 133 23 138 chr1 212523339 212523390 -30140963 + L1MB3 LINE L1 5722 5777 -406 542 51 13 0 chr1 212523390 212523468 -30140885 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1113 133 23 138 chr1 212523468 212523730 -30140623 + L1MB3 LINE L1 5777 6023 -160 1182 106 0 0 chr1 212523739 212523921 -30140432 - AluSc SINE Alu 0 313 132 192 179 0 0 chr1 212526164 212526203 -30138150 + A-rich Low_complexity Low_complexity 1 39 0 273 57 0 0 chr1 212527027 212527062 -30137291 + (CA)n Simple_repeat Simple_repeat 2 36 0 2372 68 44 0 chr1 212527193 212527487 -30136866 + AluY SINE Alu 1 307 -4 260 282 173 9 chr1 212527689 212527799 -30136554 - L2 LINE L2 0 3313 3186 240 369 54 23 chr1 212529370 212529500 -30134853 + L2 LINE L2 3134 3267 -5 950 300 58 20 chr1 212531440 212531787 -30132566 - L3 LINE CR1 -1 1576 1217 384 319 17 0 chr1 212531796 212531912 -30132441 - L3 LINE CR1 -670 907 790 277 332 45 9 chr1 212531913 212532133 -30132220 + L1ME4a LINE L1 5355 5582 -2226 342 278 209 0 chr1 212532146 212532333 -30132020 + L1ME4a LINE L1 5624 5849 -272 21 0 0 0 chr1 212532414 212532435 -30131918 + AT_rich Low_complexity Low_complexity 1 21 0 387 319 0 42 chr1 212532567 212532711 -30131642 - L3 LINE CR1 -823 754 617 2333 66 40 7 chr1 212533005 212533306 -30131047 - AluY SINE Alu 0 311 1 401 219 7 103 chr1 212533360 212533446 -30130907 - MIR SINE MIR -4 258 190 2593 43 0 3 chr1 212533446 212533746 -30130607 - AluY SINE Alu -12 299 1 401 219 7 103 chr1 212533746 212533805 -30130548 - MIR SINE MIR -72 190 127 331 298 118 67 chr1 212534090 212534405 -30129948 - L2 LINE L2 -421 2893 2563 1847 197 22 6 chr1 212534613 212534969 -30129384 + MLT1A1 LTR MaLR 1 362 -3 726 275 56 47 chr1 212535017 212535355 -30128998 + MER115 DNA AcHobo 345 685 -8 384 299 100 13 chr1 212535362 212535593 -30128760 - L2 LINE L2 -769 2545 2295 1981 144 0 3 chr1 212536020 212536312 -30128041 - AluJb SINE Alu -21 291 1 2191 76 7 0 chr1 212536344 212536620 -30127733 + AluY SINE Alu 1 278 -33 948 244 172 3 chr1 212537421 212537729 -30126624 - MER69 DNA AcHobo -2166 360 1 1567 191 45 22 chr1 212538739 212539096 -30125257 + MLT1A1 LTR MaLR 1 365 0 7814 193 30 50 chr1 212539101 212540850 -30123503 + MLT1A1-int LTR MaLR 20 1733 -2 1509 192 79 23 chr1 212540853 212541196 -30123157 + MLT1A1 LTR MaLR 2 363 -2 26 64 0 0 chr1 212541476 212541523 -30122830 + AT_rich Low_complexity Low_complexity 1 47 0 257 169 17 0 chr1 212541664 212541723 -30122630 + (TG)n Simple_repeat Simple_repeat 2 61 0 35 24 0 0 chr1 212541786 212541828 -30122525 + AT_rich Low_complexity Low_complexity 1 42 0 2399 80 0 0 chr1 212541835 212542134 -30122219 + AluY SINE Alu 1 299 -12 926 205 43 9 chr1 212542139 212542349 -30122004 - U3 snRNA snRNA 0 217 1 2263 122 0 0 chr1 212542526 212542829 -30121524 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr1 212542912 212542933 -30121420 + AT_rich Low_complexity Low_complexity 1 21 0 542 305 7 0 chr1 212544867 212545021 -30119332 - MIR3 SINE MIR -7 201 47 336 220 156 18 chr1 212545296 212545405 -30118948 + L2 LINE L2 3186 3309 -4 1182 237 28 11 chr1 212545614 212545897 -30118456 - MSTD LTR MaLR 0 396 109 1856 146 10 24 chr1 212545977 212546272 -30118081 - AluSx SINE Alu -21 291 1 242 233 68 0 chr1 212546276 212546349 -30118004 - L1ME3A LINE L1 -11 6159 6082 314 224 45 0 chr1 212546876 212546943 -30117410 - MER91B DNA MER1_type -119 71 2 244 149 21 21 chr1 212547612 212547659 -30116694 + L2 LINE L2 3267 3313 0 202 303 141 49 chr1 212547675 212547817 -30116536 - L2 LINE L2 -602 2712 2558 265 252 194 10 chr1 212548215 212548318 -30116035 + L3 LINE CR1 904 1025 -552 260 115 19 19 chr1 212548331 212548383 -30115970 - MER106A DNA MER1_type 0 236 185 299 372 13 6 chr1 212549234 212549390 -30114963 - L3 LINE CR1 -12 1565 1409 489 254 107 94 chr1 212549436 212549660 -30114693 - MIR SINE MIR -21 241 15 1023 198 40 62 chr1 212549661 212549747 -30114606 - MER34B LTR ERV1 0 585 499 2126 115 3 28 chr1 212549747 212550030 -30114323 + AluSp SINE Alu 1 277 -36 192 40 0 0 chr1 212550030 212550055 -30114298 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2126 115 3 28 chr1 212550055 212550092 -30114261 + AluSp SINE Alu 277 313 0 1023 198 40 62 chr1 212550092 212550391 -30113962 - MER34B LTR ERV1 -86 499 188 498 276 133 15 chr1 212550488 212550691 -30113662 - L3 LINE CR1 -285 1292 1066 21 0 0 0 chr1 212551066 212551087 -30113266 + AT_rich Low_complexity Low_complexity 1 21 0 461 201 237 21 chr1 212551178 212551372 -30112981 + MER106A DNA MER1_type 1 236 0 364 208 188 0 chr1 212551386 212551487 -30112866 - L3 LINE CR1 -554 1023 904 2162 74 0 11 chr1 212552505 212552813 -30111540 - AluY SINE Alu 0 305 1 2055 96 0 48 chr1 212552841 212553134 -30111219 + AluSg SINE Alu 17 295 -15 2523 242 127 123 chr1 212553534 212555178 -30109175 + L2 LINE L2 1 1637 -1677 7027 50 98 0 chr1 212555178 212556065 -30108288 - L1PA7 LINE L1 -17 6137 5236 228 32 0 0 chr1 212556065 212556096 -30108257 + U3 snRNA snRNA 8 38 -179 2038 129 10 0 chr1 212556106 212556401 -30107952 - AluSx SINE Alu -14 298 1 2523 242 127 123 chr1 212556401 212556584 -30107769 + L2 LINE L2 1645 1877 -1437 336 102 0 0 chr1 212557872 212557921 -30106432 + (T)n Simple_repeat Simple_repeat 1 49 0 213 205 0 0 chr1 212558721 212558760 -30105593 + (CATA)n Simple_repeat Simple_repeat 2 40 0 261 0 0 0 chr1 212558760 212558789 -30105564 + (TG)n Simple_repeat Simple_repeat 2 30 0 727 310 25 29 chr1 212559427 212559672 -30104681 + MIR SINE MIR 19 262 0 189 0 0 0 chr1 212560393 212560414 -30103939 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 4018 30 0 0 chr1 212560423 212560895 -30103458 - L1PA3 LINE L1 -2 6153 5682 3800 21 4 0 chr1 212560895 212561656 -30102697 + L1PA3 LINE L1 4920 5683 -472 2435 75 0 0 chr1 212562230 212562535 -30101818 + AluY SINE Alu 1 305 -6 269 244 49 37 chr1 212562570 212562652 -30101701 - MIR SINE MIR -76 186 104 664 269 109 78 chr1 212562683 212562769 -30101584 + MLT1J LTR MaLR 20 102 -409 2447 64 3 6 chr1 212562769 212563081 -30101272 + AluY SINE Alu 1 311 0 664 269 109 78 chr1 212563081 212563469 -30100884 + MLT1J LTR MaLR 102 509 -2 218 333 0 0 chr1 212563469 212563529 -30100824 - MIR SINE MIR -156 106 47 747 11 0 0 chr1 212564001 212564088 -30100265 + L1PA4 LINE L1 6061 6147 -8 2042 129 4 0 chr1 212564437 212564715 -30099638 + AluSx SINE Alu 1 279 -33 354 308 113 0 chr1 212564961 212565120 -30099233 + L1M4 LINE L1 4639 4815 -1331 1680 236 75 59 chr1 212565207 212565935 -30098418 + L1MC4 LINE L1 6820 7559 -483 502 339 143 20 chr1 212565942 212566384 -30097969 + L2 LINE L2 2474 2969 -345 * 528 347 49 62 chr1 212566354 212566723 -30097630 + L2 LINE L2 2908 3271 -1 2109 141 0 0 chr1 212566859 212567163 -30097190 + AluSg SINE Alu 1 304 -6 3521 225 22 19 chr1 212567175 212568147 -30096206 + L1MC4a LINE L1 6687 7660 -148 201 129 0 0 chr1 212568816 212568847 -30095506 + (GA)n Simple_repeat Simple_repeat 1 31 0 24 53 0 0 chr1 212569006 212569044 -30095309 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr1 212569338 212569367 -30094986 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 212569410 212569432 -30094921 + AT_rich Low_complexity Low_complexity 1 22 0 1409 135 54 1 chr1 212570207 212570516 -30093837 + MLT2C2 LTR ERVL 1 362 -52 219 69 0 0 chr1 212570519 212570548 -30093805 + (TC)n Simple_repeat Simple_repeat 2 30 0 415 148 23 0 chr1 212570673 212570761 -30093592 + CT-rich Low_complexity Low_complexity 1 90 0 2493 57 7 0 chr1 212571300 212571598 -30092755 - AluY SINE Alu -11 300 1 2528 147 46 32 chr1 212573839 212574175 -30090178 + LTR54 LTR ERV1 1 348 -162 207 0 0 0 chr1 212574175 212574198 -30090155 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2528 147 46 32 chr1 212574198 212574364 -30089989 + LTR54 LTR ERV1 348 510 0 993 173 30 20 chr1 212575273 212575475 -30088878 - MLT1A1 LTR MaLR 0 365 162 381 141 0 0 chr1 212575475 212575560 -30088793 + (GA)n Simple_repeat Simple_repeat 2 86 0 480 219 0 18 chr1 212575560 212575674 -30088679 - MLT1A1 LTR MaLR -185 180 69 295 325 25 8 chr1 212576386 212576506 -30087847 + MIR SINE MIR 60 181 -81 2210 168 54 15 chr1 212577617 212578027 -30086326 + MSTB LTR MaLR 1 426 0 1786 184 0 3 chr1 212578067 212578355 -30085998 - AluJo SINE Alu -25 287 1 312 240 100 20 chr1 212578515 212578615 -30085738 + L2 LINE L2 3198 3305 -8 545 182 23 5 chr1 212578792 212578931 -30085422 + Tigger4(Zombi) DNA MER2_type 1 145 -2586 2510 129 66 2 chr1 212578932 212579374 -30084979 + Tigger4(Zombi) DNA MER2_type 2262 2731 0 2279 218 17 43 chr1 212579375 212580069 -30084284 - L1ME2 LINE L1 -57 6501 5826 2377 66 7 13 chr1 212580069 212580370 -30083983 - AluY SINE Alu -12 299 1 2151 235 96 3 chr1 212580414 212581121 -30083232 - L1ME2 LINE L1 -1037 5503 4731 284 70 23 0 chr1 212581128 212581171 -30083182 + (CA)n Simple_repeat Simple_repeat 1 44 0 448 227 117 0 chr1 212581190 212581344 -30083009 - MER21B LTR ERV1 -57 806 635 1318 258 78 54 chr1 212581351 212581854 -30082499 - MER21B LTR ERV1 -348 515 1 370 208 164 6 chr1 212581893 212582052 -30082301 - L1ME2 LINE L1 -2751 3789 3606 * 378 193 48 69 chr1 212582049 212582194 -30082159 - L1ME2 LINE L1 -4594 1946 1805 428 271 100 31 chr1 212582266 212582863 -30081490 - L1M4 LINE L1 -3568 3076 2461 419 298 28 0 chr1 212583046 212583224 -30081129 - L1M4 LINE L1 -4615 2210 2028 708 314 65 74 chr1 212583230 212583787 -30080566 - L1M4 LINE L1 -4697 1947 1302 207 114 0 0 chr1 212583891 212583926 -30080427 + (T)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr1 212584257 212584277 -30080076 + (A)n Simple_repeat Simple_repeat 1 20 0 305 306 20 31 chr1 212585166 212585264 -30079089 - MER5A DNA MER1_type -43 146 50 392 336 25 47 chr1 212585801 212586122 -30078231 + L3 LINE CR1 1260 1573 -4 1965 160 9 26 chr1 212587354 212587697 -30076656 - MER1B DNA MER1_type 0 337 1 192 321 127 42 chr1 212588321 212588486 -30075867 - MIR3 SINE MIR -23 185 7 495 305 150 0 chr1 212590288 212590514 -30073839 + MIR SINE MIR 3 262 0 1932 152 3 7 chr1 212591620 212591910 -30072443 + AluSx SINE Alu 1 289 -23 1754 203 71 17 chr1 212592059 212592526 -30071827 + MLT1D LTR MaLR 1 492 -13 24 32 0 0 chr1 212592732 212592763 -30071590 + AT_rich Low_complexity Low_complexity 1 31 0 2363 155 29 19 chr1 212593324 212593744 -30070609 - MSTB LTR MaLR 0 426 3 323 336 9 0 chr1 212593767 212593883 -30070470 + L2 LINE L2 1810 1926 -1388 34 24 0 0 chr1 212594032 212594073 -30070280 + AT_rich Low_complexity Low_complexity 1 41 0 2694 95 55 21 chr1 212594078 212594511 -30069842 + LTR7 LTR ERV1 1 448 -2 1727 77 0 0 chr1 212594513 212594760 -30069593 + HERVH LTR ERV1 1 247 -7466 1961 72 56 0 chr1 212594760 212595065 -30069288 - HERVH LTR ERV1 -68 7645 7324 1324 124 18 5 chr1 212595065 212595282 -30069071 - HERVH LTR ERV1 -1894 5819 5600 3989 147 5 1 chr1 212595283 212595943 -30068410 - HERVH LTR ERV1 -2564 5149 4488 3195 110 6 2 chr1 212595945 212596445 -30067908 - HERVH LTR ERV1 -3720 3993 3492 882 127 7 0 chr1 212596435 212596585 -30067768 - HERVH LTR ERV1 -4423 3290 3140 * 16192 87 28 19 chr1 212596564 212599258 -30065095 - HERVH LTR ERV1 -4718 2995 437 3940 129 48 48 chr1 212599245 212600083 -30064270 - HERVH LTR ERV1 -6875 838 1 * 2660 81 60 21 chr1 212600085 212600516 -30063837 - LTR7 LTR ERV1 -2 448 1 2050 126 0 23 chr1 212600526 212600827 -30063526 + AluSx SINE Alu 1 294 -18 255 318 139 8 chr1 212602616 212602745 -30061608 + MIR3 SINE MIR 39 184 -24 180 0 0 0 chr1 212602860 212602880 -30061473 + (A)n Simple_repeat Simple_repeat 1 20 0 2041 197 19 41 chr1 212603419 212603886 -30060467 + MLT1C LTR MaLR 7 463 -4 2212 113 0 0 chr1 212604423 212604707 -30059646 + AluSq SINE Alu 1 284 -29 216 97 0 0 chr1 212604707 212604738 -30059615 + (TA)n Simple_repeat Simple_repeat 1 31 0 271 325 162 17 chr1 212604983 212605100 -30059253 + L2 LINE L2 3117 3250 -22 1890 165 8 5 chr1 212605774 212606144 -30058209 + L1MA8 LINE L1 4916 5286 -860 300 103 86 17 chr1 212606136 212606194 -30058159 + L1P LINE L1 5315 5376 -778 * 2650 142 7 9 chr1 212606192 212606651 -30057702 + L1MA8 LINE L1 5454 5911 -380 1834 161 52 45 chr1 212606651 212607010 -30057343 + MSTB LTR MaLR 1 365 -61 1879 176 3 10 chr1 212607010 212607323 -30057030 - AluSx SINE Alu -1 311 1 1834 161 52 45 chr1 212607323 212607366 -30056987 + MSTB LTR MaLR 365 406 -20 2092 94 67 3 chr1 212607367 212607709 -30056644 + L1MA8 LINE L1 5925 6288 -3 205 337 11 0 chr1 212608342 212608434 -30055919 - MIR SINE MIR -46 216 124 238 376 100 53 chr1 212608728 212609159 -30055194 - L2 LINE L2 -15 3257 2807 858 195 47 47 chr1 212609206 212609396 -30054957 + MER20 DNA MER1_type 1 190 -29 231 326 116 21 chr1 212610102 212610335 -30054018 - L2 LINE L2 -938 2376 2122 309 132 26 26 chr1 212610468 212610544 -30053809 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 393 232 17 23 chr1 212612410 212612587 -30051766 + CT-rich Low_complexity Low_complexity 1 176 0 216 273 0 0 chr1 212612609 212612686 -30051667 + CT-rich Low_complexity Low_complexity 4 80 0 234 0 0 0 chr1 212612946 212612972 -30051381 + (T)n Simple_repeat Simple_repeat 1 26 0 2797 16 0 0 chr1 212613034 212613343 -30051010 - AluYa5 SINE Alu -2 309 1 350 328 31 8 chr1 212615634 212615762 -30048591 - MIR3 SINE MIR -7 201 71 920 241 77 104 chr1 212615762 212616319 -30048034 + MER34 LTR ERV1 1 542 0 190 302 19 66 chr1 212616683 212616789 -30047564 + MIR SINE MIR 5 105 -157 24 0 0 0 chr1 212616998 212617022 -30047331 + AT_rich Low_complexity Low_complexity 1 24 0 306 326 132 31 chr1 212618433 212618660 -30045693 - MIR SINE MIR -12 250 1 207 196 120 65 chr1 212618774 212618822 -30045531 + L3b LINE CR1 1421 1465 -118 2081 112 3 13 chr1 212618822 212619136 -30045217 + AluSx SINE Alu 1 311 -1 207 196 120 65 chr1 212619136 212619179 -30045174 + L3b LINE CR1 1465 1517 -66 277 320 44 75 chr1 212620019 212620313 -30044040 + MLT1K LTR MaLR 140 424 -164 230 193 18 0 chr1 212620392 212620449 -30043904 + (TG)n Simple_repeat Simple_repeat 2 59 0 221 182 23 0 chr1 212620864 212620908 -30043445 + (CAATT)n Simple_repeat Simple_repeat 3 47 0 2313 49 0 7 chr1 212622139 212622463 -30041890 + AluY SINE Alu 1 322 0 225 65 0 0 chr1 212622967 212622998 -30041355 + (CA)n Simple_repeat Simple_repeat 2 32 0 2252 71 0 7 chr1 212623370 212623675 -30040678 - AluY SINE Alu 0 303 1 884 222 168 119 chr1 212623675 212624239 -30040114 - MLT1G1 LTR MaLR -3 592 1 4545 167 44 58 chr1 212625528 212626530 -30037823 + L1MD2 LINE L1 5362 6349 -10 2322 91 3 0 chr1 212626920 212627217 -30037136 + AluSp SINE Alu 1 298 -15 29 47 0 0 chr1 212627563 212627606 -30036747 + AT_rich Low_complexity Low_complexity 1 43 0 228 284 133 26 chr1 212627627 212627898 -30036455 + L1MC4a LINE L1 5751 6050 -1758 27051 140 9 11 chr1 212628220 212633383 -30030970 - L1PA8A LINE L1 0 6446 1228 216 67 0 0 chr1 212633383 212633413 -30030940 + (TTG)n Simple_repeat Simple_repeat 1 30 0 27051 140 9 11 chr1 212633413 212634638 -30029715 - L1PA8A LINE L1 -5218 1228 2 2278 134 51 13 chr1 212634716 212635088 -30029265 + MER61D LTR ERV1 116 501 0 886 221 39 26 chr1 212635106 212635414 -30028939 + L1MC5 LINE L1 7615 7926 -35 824 157 20 0 chr1 212635430 212635583 -30028770 + L1P LINE L1 5254 5409 -757 28 29 0 0 chr1 212636374 212636409 -30027944 + AT_rich Low_complexity Low_complexity 1 35 0 1076 286 66 46 chr1 212636655 212637252 -30027101 - L2 LINE L2 -4 3309 2726 2231 120 45 72 chr1 212637252 212637626 -30026727 - THE1B LTR MaLR 0 364 1 12900 89 2 1 chr1 212637626 212639204 -30025149 - THE1B-int LTR MaLR 0 1580 1 2006 131 116 33 chr1 212639204 212639540 -30024813 - THE1B LTR MaLR 0 364 1 1076 286 66 46 chr1 212639540 212639689 -30024664 - L2 LINE L2 -586 2727 2503 243 206 88 0 chr1 212640397 212640465 -30023888 - MIR SINE MIR -79 183 110 2515 87 0 0 chr1 212640524 212640836 -30023517 - AluSx SINE Alu 0 312 1 267 357 113 0 chr1 212641078 212641263 -30023090 - MIR SINE MIR -37 225 20 821 233 6 0 chr1 212641269 212641432 -30022921 + MIR SINE MIR 3 166 -96 189 0 0 0 chr1 212641866 212641887 -30022466 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 294 29 0 0 chr1 212641986 212642021 -30022332 + (TG)n Simple_repeat Simple_repeat 1 35 0 286 152 121 30 chr1 212642535 212642601 -30021752 - Tigger5 DNA MER2_type 0 2323 2252 1776 116 0 4 chr1 212642917 212643159 -30021194 - AluSx SINE Alu -71 241 1 284 289 193 15 chr1 212643159 212643287 -30021066 + MLT1H1 LTR MaLR 141 295 -260 696 238 14 0 chr1 212644219 212644362 -30019991 + MLT1H1 LTR MaLR 7 151 -404 2453 73 0 3 chr1 212644366 212644667 -30019686 - AluSx SINE Alu -12 300 1 2169 160 15 12 chr1 212644667 212645068 -30019285 - L1MB4 LINE L1 -210 5970 5569 1976 244 50 35 chr1 212646518 212646665 -30017688 + MLT1H1 LTR MaLR 7 150 -405 2150 116 17 0 chr1 212646665 212646959 -30017394 - AluSx SINE Alu -13 299 1 1976 244 50 35 chr1 212646959 212647352 -30017001 + MLT1H1 LTR MaLR 150 555 0 198 279 82 0 chr1 212647534 212647595 -30016758 + MIR SINE MIR 82 147 -115 213 302 14 79 chr1 212648425 212648564 -30015789 + MER5B DNA MER1_type 23 152 -26 3237 112 121 4 chr1 212649293 212649765 -30014588 + MER1A DNA MER1_type 1 527 0 572 250 15 112 chr1 212650743 212651011 -30013342 + MIR SINE MIR 1 242 -20 1296 170 104 42 chr1 212651166 212651455 -30012898 + AluJo SINE Alu 1 307 -5 523 200 214 7 chr1 212652029 212652174 -30012179 - MER5A DNA MER1_type -1 188 14 216 0 0 0 chr1 212652329 212652353 -30012000 + (TG)n Simple_repeat Simple_repeat 2 25 0 267 302 16 16 chr1 212652388 212652517 -30011836 + GA-rich Low_complexity Low_complexity 4 132 0 1419 204 7 14 chr1 212652877 212653152 -30011201 + AluJo SINE Alu 1 273 -39 288 0 0 0 chr1 212653170 212653202 -30011151 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1939 142 0 14 chr1 212654129 212654418 -30009935 + AluSx SINE Alu 1 285 -27 204 40 0 0 chr1 212654419 212654444 -30009909 + (CAAT)n Simple_repeat Simple_repeat 3 27 0 190 290 32 0 chr1 212654807 212654869 -30009484 + L2 LINE L2 3165 3228 -85 183 42 0 0 chr1 212655313 212655337 -30009016 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2780 258 108 47 chr1 212657400 212657860 -30006493 + MER45C DNA AcHobo 10 441 -1140 539 82 10 71 chr1 212657860 212657958 -30006395 - L1PB2 LINE L1 0 6151 6060 2780 258 108 47 chr1 212657958 212658387 -30005966 + MER45C DNA AcHobo 441 953 0 382 275 60 55 chr1 212658469 212658651 -30005702 + MIR SINE MIR 48 230 -32 245 149 75 30 chr1 212659040 212659107 -30005246 - L1MD3 LINE L1 -130 7865 7796 549 168 95 29 chr1 212659109 212659128 -30005225 + L1MD3 LINE L1 7834 7850 -145 805 110 0 17 chr1 212659128 212659246 -30005107 - L1MA2 LINE L1 0 6304 6189 549 168 95 29 chr1 212659246 212659353 -30005000 + L1MD3 LINE L1 7850 7972 -23 1580 176 7 24 chr1 212659353 212659649 -30004704 + AluJo SINE Alu 1 291 -21 2107 101 4 0 chr1 212659659 212659984 -30004369 + AluSc SINE Alu 3 328 0 313 268 14 0 chr1 212660268 212660339 -30004014 + MER5A DNA MER1_type 1 72 -117 205 367 0 0 chr1 212660835 212660895 -30003458 + MER5A DNA MER1_type 130 189 0 2612 47 0 3 chr1 212660958 212661259 -30003094 - AluY SINE Alu -11 300 1 2272 91 3 3 chr1 212661259 212661555 -30002798 - AluSx SINE Alu -16 296 1 505 238 113 6 chr1 212661669 212661829 -30002524 - MER5B DNA MER1_type 0 178 2 211 269 47 127 chr1 212661835 212662170 -30002183 + L3 LINE CR1 1191 1559 -18 215 294 0 0 chr1 212662265 212662316 -30002037 - MER5A DNA MER1_type -22 167 117 2576 64 0 10 chr1 212662627 212662941 -30001412 + AluY SINE Alu 1 311 0 2445 66 0 10 chr1 212664333 212664634 -29999719 + AluY SINE Alu 1 298 -13 283 233 22 33 chr1 212664831 212664921 -29999432 + CT-rich Low_complexity Low_complexity 1 89 0 181 255 206 10 chr1 212665172 212665274 -29999079 - MIR SINE MIR -63 145 24 457 281 115 99 chr1 212665944 212666161 -29998192 - L3 LINE CR1 -108 1469 1257 2186 84 3 11 chr1 212666161 212666472 -29997881 - AluY SINE Alu 0 309 1 457 281 115 99 chr1 212666472 212666826 -29997527 - L3 LINE CR1 -320 1257 888 229 275 9 92 chr1 212669156 212669265 -29995088 + L2 LINE L2 3197 3296 -17 240 274 88 35 chr1 212669360 212669473 -29994880 - MIR SINE MIR -48 214 96 204 357 107 30 chr1 212671272 212671608 -29992745 + L2 LINE L2 2819 3180 -92 244 261 193 25 chr1 212671615 212671734 -29992619 + MIR SINE MIR 124 262 0 250 345 14 42 chr1 212672233 212672375 -29991978 - MIR SINE MIR -55 153 16 236 94 0 0 chr1 212672597 212672629 -29991724 + MER57A LTR ERV1 295 326 -77 182 37 37 0 chr1 212672661 212672688 -29991665 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 243 186 128 108 chr1 212673297 212673399 -29990954 - MIR SINE MIR -48 214 111 701 238 0 0 chr1 212673926 212674069 -29990284 - MIR SINE MIR -59 203 61 22 35 0 0 chr1 212674472 212674501 -29989852 + AT_rich Low_complexity Low_complexity 1 29 0 192 97 0 0 chr1 212676691 212676722 -29987631 + (CA)n Simple_repeat Simple_repeat 1 31 0 342 225 22 114 chr1 212676901 212676987 -29987366 + MIR SINE MIR 10 102 -159 2375 85 3 0 chr1 212676987 212677294 -29987059 + AluY SINE Alu 1 308 -3 342 225 22 114 chr1 212677294 212677405 -29986948 + MIR SINE MIR 102 196 -65 522 277 61 0 chr1 212677525 212677673 -29986680 + MIR SINE MIR 86 242 -20 238 268 0 18 chr1 212678262 212678318 -29986035 - MIR SINE MIR -206 56 2 540 217 133 36 chr1 212678409 212678575 -29985778 + MIR SINE MIR 59 240 -22 189 107 0 0 chr1 212678583 212678611 -29985742 + (TTA)n Simple_repeat Simple_repeat 2 29 0 279 177 0 0 chr1 212679039 212679101 -29985252 + A-rich Low_complexity Low_complexity 1 62 0 2590 55 0 6 chr1 212679107 212679418 -29984935 + AluY SINE Alu 1 309 -2 808 200 34 6 chr1 212679739 212679914 -29984439 + AluJo SINE Alu 105 284 -28 2040 114 0 17 chr1 212679928 212680065 -29984288 + AluSx SINE Alu 1 139 -178 2191 75 0 27 chr1 212680065 212680399 -29983954 + AluSx SINE Alu 1 312 0 2040 114 0 17 chr1 212680399 212680583 -29983770 + AluSx SINE Alu 139 317 0 1970 121 3 37 chr1 212680951 212681274 -29983079 - AluJb SINE Alu 0 312 1 448 255 30 22 chr1 212681408 212681655 -29982698 + MLT1I LTR MaLR 67 359 -50 265 264 130 92 chr1 212682039 212682300 -29982053 + L2 LINE L2 3002 3272 0 369 255 142 39 chr1 212682951 212683008 -29981345 + L2 LINE L2 2624 2674 -640 2390 100 0 3 chr1 212683008 212683318 -29981035 - AluSc SINE Alu 0 309 1 369 255 142 39 chr1 212683318 212683464 -29980889 + L2 LINE L2 2674 2848 -466 440 270 97 67 chr1 212683505 212683846 -29980507 + L2 LINE L2 2945 3295 -18 2162 109 27 0 chr1 212683856 212684149 -29980204 + AluSq SINE Alu 1 301 -12 2146 107 3 23 chr1 212684192 212684500 -29979853 + AluSc SINE Alu 1 302 -7 365 262 122 43 chr1 212685510 212685674 -29978679 - MER5A DNA MER1_type -10 179 3 1499 179 28 39 chr1 212685681 212685966 -29978387 + AluJo SINE Alu 1 282 -30 357 291 126 15 chr1 212687089 212687288 -29977065 + MIR SINE MIR 32 252 -10 1413 115 64 9 chr1 212688179 212688397 -29975956 + MER30 DNA MER1_type 1 230 0 2275 118 0 0 chr1 212691140 212691437 -29972916 + AluSg SINE Alu 1 297 -13 215 0 0 62 chr1 212691596 212691628 -29972725 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1351 92 25 5 chr1 212691628 212691824 -29972529 - L1PA10 LINE L1 -21 6147 5948 329 280 36 78 chr1 212692048 212692241 -29972112 + MER5A DNA MER1_type 1 185 -4 2360 79 20 0 chr1 212693452 212693744 -29970609 + AluY SINE Alu 2 299 -12 2409 100 0 0 chr1 212695054 212695363 -29968990 - AluSq SINE Alu -4 309 1 1738 170 10 7 chr1 212695774 212696068 -29968285 + AluJo SINE Alu 1 295 -17 21 36 0 0 chr1 212696121 212696149 -29968204 + AT_rich Low_complexity Low_complexity 1 28 0 417 155 67 186 chr1 212696361 212696554 -29967799 + MER104 DNA Tc2 5 174 -6 225 298 137 42 chr1 212696576 212696744 -29967609 - MIR SINE MIR -35 227 44 2086 134 10 0 chr1 212697093 212697391 -29966962 + AluSx SINE Alu 1 301 -11 437 261 43 7 chr1 212697694 212697832 -29966521 + MIR SINE MIR 116 258 -4 434 291 54 36 chr1 212698292 212698379 -29965974 - L2 LINE L2 -183 3089 3005 1865 164 24 0 chr1 212698379 212698677 -29965676 - AluJo SINE Alu -6 306 2 434 291 54 36 chr1 212698677 212698867 -29965486 - L2 LINE L2 -267 3005 2807 434 258 62 8 chr1 212699134 212699262 -29965091 + MER104 DNA Tc2 34 168 -12 295 231 108 46 chr1 212699288 212699418 -29964935 - MIR SINE MIR -25 237 100 228 194 0 45 chr1 212700145 212700212 -29964141 + (GGGTG)n Simple_repeat Simple_repeat 4 67 0 917 185 11 42 chr1 212701779 212701968 -29962385 - MER20 DNA MER1_type 0 219 37 197 62 0 31 chr1 212704193 212704225 -29960128 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr1 212704340 212704361 -29959992 + AT_rich Low_complexity Low_complexity 1 21 0 324 70 0 0 chr1 212706199 212706242 -29958111 + (TG)n Simple_repeat Simple_repeat 1 43 0 203 175 0 16 chr1 212706835 212706898 -29957455 + CT-rich Low_complexity Low_complexity 2 63 0 617 235 123 0 chr1 212708119 212708281 -29956072 - MIR SINE MIR -71 191 10 563 236 30 24 chr1 212708326 212708491 -29955862 - MER103 DNA DNA 0 166 1 321 280 93 8 chr1 212709507 212709625 -29954728 + MIR SINE MIR 2 129 -133 210 37 0 0 chr1 212709679 212709706 -29954647 + (TC)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr1 212710293 212710316 -29954037 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr1 212711234 212711269 -29953084 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr1 212711421 212711449 -29952904 + AT_rich Low_complexity Low_complexity 1 28 0 380 315 9 0 chr1 212711668 212711779 -29952574 + MER94 DNA DNA 1 112 -22 423 297 0 0 chr1 212712935 212713046 -29951307 - MER94 DNA DNA 0 134 24 2344 72 0 7 chr1 212714284 212714575 -29949778 - AluY SINE Alu -22 289 1 3929 64 229 0 chr1 212714695 212715255 -29949098 - LTR12 LTR ERV1 0 688 1 1254 232 124 57 chr1 212715328 212715940 -29948413 - MLT1E1 LTR MaLR -1 653 1 228 250 0 0 chr1 212718044 212718092 -29946261 - L2 LINE L2 0 3272 3225 200 340 48 29 chr1 212718315 212718418 -29945935 - MIR SINE MIR -147 115 11 354 229 0 62 chr1 212720153 212720249 -29944104 + L1MC4 LINE L1 6614 6703 -1339 319 304 22 0 chr1 212720179 212720271 -29944082 - L1MC4 LINE L1 -1335 6707 6614 * 231 36 0 0 chr1 212720271 212720299 -29944054 + (TG)n Simple_repeat Simple_repeat 2 29 0 * 360 0 0 0 chr1 212720298 212720338 -29944015 + (TA)n Simple_repeat Simple_repeat 1 40 0 880 133 0 0 chr1 212720338 212720458 -29943895 - AluSg/x SINE Alu -28 284 165 837 117 0 0 chr1 212720458 212720586 -29943767 + (TA)n Simple_repeat Simple_repeat 2 129 0 2002 152 0 0 chr1 212720586 212720869 -29943484 - AluSx SINE Alu -29 283 1 472 312 110 84 chr1 212721001 212721887 -29942466 + L1MEd LINE L1 681 1724 -766 21 71 0 0 chr1 212722026 212722068 -29942285 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 212722233 212722258 -29942095 + AT_rich Low_complexity Low_complexity 1 25 0 736 91 10 0 chr1 212722266 212722365 -29941988 - L1P LINE L1 -1524 4622 4523 1772 173 0 0 chr1 212722365 212722636 -29941717 - AluSx SINE Alu -41 271 1 758 238 0 0 chr1 212722656 212722803 -29941550 - LTR40a LTR ERVL -372 147 1 731 268 114 47 chr1 212723065 212723598 -29940755 + L1MEd LINE L1 657 1225 -4894 22354 86 12 5 chr1 212723695 212727153 -29937200 - L1PA7 LINE L1 0 6154 2662 2200 104 0 10 chr1 212727153 212727451 -29936902 + AluY SINE Alu 1 295 -16 22354 86 12 5 chr1 212727451 212728068 -29936285 - L1PA7 LINE L1 -3492 2662 2051 4476 128 32 15 chr1 212728174 212728914 -29935439 + L1PA16 LINE L1 5411 6163 -3 246 350 82 5 chr1 212729293 212729487 -29934866 + MIR SINE MIR 44 252 -10 26 0 0 0 chr1 212731583 212731609 -29932744 + AT_rich Low_complexity Low_complexity 1 26 0 226 261 23 45 chr1 212731918 212732006 -29932347 - MLT1E1 LTR MaLR -335 319 234 441 299 94 36 chr1 212732139 212732363 -29931990 - MIR SINE MIR -16 246 10 238 202 39 132 chr1 212732462 212732591 -29931762 - L2 LINE L2 0 3272 3156 276 192 48 48 chr1 212732634 212732738 -29931615 - L2 LINE L2 -88 3225 3122 194 62 31 0 chr1 212732844 212732876 -29931477 + (TAA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr1 212734105 212734125 -29930228 + (T)n Simple_repeat Simple_repeat 1 20 0 581 298 6 18 chr1 212734761 212734928 -29929425 + Zaphod DNA AcHobo 1 165 -3866 1242 197 94 3 chr1 212734928 212735227 -29929126 - MER45B DNA AcHobo 0 1040 715 1226 262 112 78 chr1 212735340 212735938 -29928415 - MER45C DNA AcHobo -189 764 135 2261 81 0 31 chr1 212735938 212736259 -29928094 + AluY SINE Alu 1 311 0 1226 262 112 78 chr1 212736259 212736392 -29927961 - MER45C DNA AcHobo -818 135 8 828 290 39 18 chr1 212736390 212736554 -29927799 + Zaphod DNA AcHobo 158 332 -3699 * 234 0 0 0 chr1 212736554 212736580 -29927773 + (TG)n Simple_repeat Simple_repeat 2 27 0 828 290 39 18 chr1 212736580 212736694 -29927659 + Zaphod DNA AcHobo 332 442 -3589 47 33 0 0 chr1 212736694 212736755 -29927598 + AT_rich Low_complexity Low_complexity 1 61 0 543 247 7 45 chr1 212736915 212737078 -29927275 - MER52A LTR ERV1 -12 489 345 656 192 32 181 chr1 212737081 212737373 -29926980 - LTR28 LTR ERV1 -849 906 2 1132 205 74 38 chr1 212737377 212737821 -29926532 + Zaphod DNA AcHobo 462 921 -3110 1355 157 50 25 chr1 212737847 212738166 -29926187 + Zaphod DNA AcHobo 3610 3936 -95 234 170 64 0 chr1 212738680 212738727 -29925626 - LTR40a LTR ERVL 0 519 470 253 291 42 35 chr1 212738969 212739230 -29925123 + L1 LINE L1 2289 2551 -3595 989 283 126 53 chr1 212739653 212739902 -29924451 + HAL1 LINE L1 261 490 -2017 2316 69 0 30 chr1 212739902 212740205 -29924148 + AluY SINE Alu 5 298 -13 989 283 126 53 chr1 212740205 212740803 -29923550 + HAL1 LINE L1 490 1170 -1337 627 269 70 103 chr1 212741159 212741476 -29922877 + LTR16A1 LTR ERVL 45 346 -111 2362 96 3 0 chr1 212741476 212741788 -29922565 - AluSp SINE Alu 0 313 1 627 269 70 103 chr1 212741788 212741897 -29922456 + LTR16A1 LTR ERVL 346 457 0 630 132 33 0 chr1 212742033 212742154 -29922199 - L1MEc LINE L1 -4095 2301 2177 3885 200 39 20 chr1 212742155 212742919 -29921434 - Charlie1a DNA MER1_type -1879 882 98 2278 204 89 6 chr1 212742919 212743457 -29920896 + MER119 DNA MER1_type 1 583 0 3885 200 39 20 chr1 212743457 212743557 -29920796 - Charlie1a DNA MER1_type -2663 98 1 213 358 57 16 chr1 212743717 212743840 -29920513 - L2 LINE L2 -1 3271 3144 345 250 40 0 chr1 212746199 212746275 -29918078 - MIR3 SINE MIR -10 198 120 295 352 64 46 chr1 212747302 212747629 -29916724 + L2 LINE L2 2294 2626 -688 736 211 0 0 chr1 212747646 212747769 -29916584 - FLAM_A SINE Alu -10 123 1 238 350 88 44 chr1 212748227 212748435 -29915918 - L2 LINE L2 -213 3059 2862 1757 208 50 12 chr1 212748435 212748834 -29915519 - MLT2D LTR ERVL 0 414 1 238 350 88 44 chr1 212748834 212749036 -29915317 - L2 LINE L2 -410 2862 2637 2340 209 132 31 chr1 212749215 212749800 -29914553 + MLT1E1 LTR MaLR 1 644 -10 182 267 17 17 chr1 212749984 212750044 -29914309 + L2 LINE L2 3194 3253 -19 391 181 14 0 chr1 212751036 212751108 -29913245 + L2 LINE L2 3235 3307 -6 24 32 0 0 chr1 212751886 212751917 -29912436 + AT_rich Low_complexity Low_complexity 1 31 0 283 307 163 7 chr1 212753045 212753198 -29911155 - MIR SINE MIR -48 214 38 * 336 292 262 0 chr1 212753153 212753355 -29910998 + MIR SINE MIR 6 260 -2 23 54 0 0 chr1 212754457 212754494 -29909859 + AT_rich Low_complexity Low_complexity 1 37 0 2427 70 3 6 chr1 212754684 212754996 -29909357 - AluY SINE Alu 0 311 1 203 311 110 46 chr1 212755655 212755957 -29908396 + L2 LINE L2 1875 2260 -1054 1611 193 22 41 chr1 212755959 212756322 -29908031 - MLT1A1 LTR MaLR 0 365 10 283 274 12 0 chr1 212756332 212756416 -29907937 + L2 LINE L2 2278 2362 -952 318 284 58 36 chr1 212757400 212757678 -29906675 + L1ME LINE L1 4774 5057 -1089 277 330 121 7 chr1 212757888 212758170 -29906183 + L1ME LINE L1 5315 5628 -542 284 294 106 0 chr1 212758292 212758377 -29905976 - MLT1H1 LTR MaLR -252 303 210 354 74 0 0 chr1 212758399 212758453 -29905900 + (GA)n Simple_repeat Simple_repeat 1 54 0 252 290 56 28 chr1 212758453 212758560 -29905793 - MLT1H1 LTR MaLR -310 239 130 1795 246 143 21 chr1 212758569 212759086 -29905267 - MLT1E LTR MaLR -4 589 10 364 221 25 27 chr1 212759067 212759176 -29905177 - MLT1H1 LTR MaLR -446 149 3 * 221 221 195 26 chr1 212759331 212759408 -29904945 - L2 LINE L2 0 3313 3224 913 322 71 56 chr1 212759603 212760366 -29903987 - L2 LINE L2 -223 3090 2318 225 385 36 0 chr1 212760810 212760976 -29903377 + MIR SINE MIR 57 228 -34 285 329 39 120 chr1 212761233 212761881 -29902472 - L2 LINE L2 -341 2973 2379 2018 62 4 12 chr1 212765192 212765448 -29898905 + AluY SINE Alu 1 254 -57 296 384 33 7 chr1 212765558 212765709 -29898644 - L2 LINE L2 -224 3048 2894 375 309 16 0 chr1 212766358 212766481 -29897872 + MER117 DNA MER1_type 8 132 -65 25 31 0 0 chr1 212768457 212768489 -29895864 + AT_rich Low_complexity Low_complexity 1 32 0 2165 125 141 5 chr1 212769222 212769597 -29894756 + MSTA LTR MaLR 1 426 -2 509 279 80 50 chr1 212769646 212769777 -29894576 - L1MC5 LINE L1 -178 7783 7657 2360 89 0 10 chr1 212769777 212770080 -29894273 + AluSc SINE Alu 3 302 -7 509 279 80 50 chr1 212770080 212770716 -29893637 - L1MC5 LINE L1 -304 7657 7162 16286 169 31 27 chr1 212770813 212771642 -29892711 + L1M1 LINE L1 15 839 -6726 2065 75 57 14 chr1 212771642 212771921 -29892432 + AluY SINE Alu 5 295 -16 16286 169 31 27 chr1 212771921 212774473 -29889880 + L1M1 LINE L1 839 3379 -4186 1879 151 3 26 chr1 212774473 212774785 -29889568 + AluSx SINE Alu 1 305 -7 16286 169 31 27 chr1 212774785 212775876 -29888477 + L1M1 LINE L1 3379 4464 -3101 2455 57 3 10 chr1 212775876 212776177 -29888176 + AluY SINE Alu 1 299 -12 16286 169 31 27 chr1 212776177 212777355 -29886998 + L1M1 LINE L1 4464 5935 -1630 6130 162 20 44 chr1 212777455 212778811 -29885542 - L1P LINE L1 -4188 1958 636 1003 115 19 0 chr1 212778827 212778983 -29885370 + L1P3 LINE L1 360 518 -5943 21 36 0 0 chr1 212779155 212779183 -29885170 + AT_rich Low_complexity Low_complexity 1 28 0 304 277 64 0 chr1 212779217 212779311 -29885042 + MIR SINE MIR 151 250 -12 186 348 33 11 chr1 212779896 212779988 -29884365 - MIR SINE MIR -113 149 56 677 297 115 43 chr1 212779997 212780719 -29883634 - L2 LINE L2 -7 3306 2538 454 327 118 48 chr1 212780835 212781208 -29883145 + L2 LINE L2 2852 3250 -22 643 362 31 4 chr1 212781211 212781465 -29882888 - MIR SINE MIR 0 262 2 328 293 0 0 chr1 212781965 212782047 -29882306 + L2 LINE L2 3230 3311 -2 197 278 111 37 chr1 212782754 212782862 -29881491 - L2 LINE L2 -46 3267 3152 216 195 24 0 chr1 212783296 212783337 -29881016 + (ATG)n Simple_repeat Simple_repeat 3 44 0 295 322 25 25 chr1 212783490 212783611 -29880742 - L3 LINE CR1 -7 1570 1450 203 310 0 0 chr1 212786645 212786703 -29877650 + MIR SINE MIR 165 222 -40 850 257 0 14 chr1 212786869 212787091 -29877262 + MER20 DNA MER1_type 1 219 0 1505 186 75 17 chr1 212788315 212788729 -29875624 - L1MB8 LINE L1 -2 6176 5739 252 185 0 0 chr1 212789950 212790004 -29874349 + CT-rich Low_complexity Low_complexity 1 54 0 310 185 0 19 chr1 212790085 212790139 -29874214 + L2 LINE L2 3249 3301 -12 708 193 6 11 chr1 212791098 212791274 -29873079 + CT-rich Low_complexity Low_complexity 3 177 0 2009 156 0 3 chr1 212791626 212791959 -29872394 + MLT1A1 LTR MaLR 34 365 0 320 0 25 0 chr1 212792043 212792083 -29872270 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2215 109 0 0 chr1 212792087 212792371 -29871982 - AluSx SINE Alu -24 288 5 951 263 138 24 chr1 212792475 212792878 -29871475 + L1MC4a LINE L1 5433 5895 -1913 1938 65 29 0 chr1 212792878 212793124 -29871229 + AluYb8 SINE Alu 53 305 -13 951 263 138 24 chr1 212793124 212793177 -29871176 + L1MC4a LINE L1 5895 5941 -1867 2529 51 3 6 chr1 212794153 212794464 -29869889 + AluY SINE Alu 1 310 -1 1415 225 125 42 chr1 212794571 212795068 -29869285 + MLT1F LTR MaLR 1 538 -4 2409 70 3 16 chr1 212795529 212795844 -29868509 - AluY SINE Alu 0 311 1 207 231 77 46 chr1 212796301 212796341 -29868012 - MER5B DNA MER1_type 0 178 134 3923 138 16 3 chr1 212796341 212796979 -29867374 + L1PA16 LINE L1 5512 6157 -9 201 286 13 52 chr1 212796979 212797056 -29867297 + MER5B DNA MER1_type 17 90 -88 258 264 14 0 chr1 212797138 212797210 -29867143 - Charlie8 DNA MER1_type -2344 73 1 21 71 0 0 chr1 212798017 212798059 -29866294 + AT_rich Low_complexity Low_complexity 1 42 0 209 299 60 15 chr1 212798155 212798222 -29866131 + MIR SINE MIR 45 114 -94 909 22 44 0 chr1 212800543 212800679 -29863674 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 520 118 20 26 chr1 212800698 212800850 -29863503 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 190 293 17 0 chr1 212800997 212801057 -29863296 + MIR SINE MIR 103 162 -62 194 203 34 51 chr1 212801529 212801588 -29862765 + MIR SINE MIR 193 250 -12 185 318 0 0 chr1 212801557 212801601 -29862752 + L2 LINE L2 3265 3308 -5 * 262 298 81 43 chr1 212801980 212802238 -29862115 - Tigger8 DNA MER2_type -384 282 15 432 0 0 0 chr1 212802689 212802737 -29861616 + (TC)n Simple_repeat Simple_repeat 1 48 0 292 283 126 20 chr1 212802805 212803003 -29861350 + L2 LINE L2 1813 2031 -1283 288 0 0 0 chr1 212803040 212803072 -29861281 + (TG)n Simple_repeat Simple_repeat 2 33 0 489 259 146 9 chr1 212803116 212803336 -29861017 - L2 LINE L2 -144 3169 2920 * 1015 252 56 81 chr1 212803325 212803734 -29860619 - L2 LINE L2 -552 2762 2364 239 135 135 0 chr1 212803738 212803790 -29860563 - LTR40b LTR ERVL -4 458 400 240 267 0 0 chr1 212804139 212804214 -29860139 + MLT1L LTR MaLR 537 611 -4 1109 301 90 44 chr1 212804544 212805271 -29859082 - L2 LINE L2 -12 3301 2460 295 272 148 71 chr1 212807100 212807479 -29856874 + MLT1K LTR MaLR 139 546 -42 1665 356 60 14 chr1 212808011 212808859 -29855494 + L3 LINE CR1 443 1329 -248 212 305 12 37 chr1 212808871 212808953 -29855400 - L2 LINE L2 -3 3310 3231 3975 263 140 31 chr1 212809077 212811233 -29853120 - HAL1 LINE L1 -5 2502 112 534 269 59 0 chr1 212812324 212812510 -29851843 - LTR33A LTR ERVL -4 519 323 284 250 29 86 chr1 212812540 212812680 -29851673 - LTR33A LTR ERVL -326 197 66 702 0 0 0 chr1 212812689 212812767 -29851586 + (CAAAG)n Simple_repeat Simple_repeat 5 82 0 25 31 0 0 chr1 212814103 212814135 -29850218 + AT_rich Low_complexity Low_complexity 1 32 0 722 110 31 8 chr1 212814135 212814262 -29850091 - L1MB3 LINE L1 -1 6182 6053 564 301 92 0 chr1 212814582 212814778 -29849575 - L2 LINE L2 0 3313 3100 187 404 10 20 chr1 212815058 212815157 -29849196 - L2 LINE L2 0 3272 3175 499 91 26 0 chr1 212815178 212815255 -29849098 + MADE1 DNA Mariner 1 79 -1 346 195 183 0 chr1 212815679 212815761 -29848592 - L2 LINE L2 0 3313 3217 1014 192 45 71 chr1 212815761 212816069 -29848284 - MLT2C1 LTR ERVL -97 300 1 193 250 29 44 chr1 212817906 212817974 -29846379 - L2 LINE L2 -229 3043 2977 1471 150 170 12 chr1 212818366 212818707 -29845646 + MSTA LTR MaLR 32 426 -2 534 277 36 5 chr1 212819075 212819276 -29845077 - MLT1J LTR MaLR -273 199 1 2321 100 3 0 chr1 212819435 212819734 -29844619 - AluSx SINE Alu -12 300 1 213 121 0 0 chr1 212820542 212820575 -29843778 + (TG)n Simple_repeat Simple_repeat 1 33 0 29 0 0 0 chr1 212822260 212822289 -29842064 + AT_rich Low_complexity Low_complexity 1 29 0 444 333 7 0 chr1 212822358 212822496 -29841857 + L2 LINE L2 3134 3272 0 215 306 32 0 chr1 212822500 212822562 -29841791 - L2 LINE L2 -90 3182 3119 216 0 0 0 chr1 212823259 212823283 -29841070 + (A)n Simple_repeat Simple_repeat 1 24 0 1948 136 0 7 chr1 212824763 212825035 -29839318 + AluSx SINE Alu 3 272 -40 369 0 0 0 chr1 212825035 212825076 -29839277 + (TC)n Simple_repeat Simple_repeat 2 42 0 303 315 0 0 chr1 212825082 212825171 -29839182 - L1MC4 LINE L1 -1339 6703 6615 3906 203 45 3 chr1 212875268 212876882 -29787471 - L1MA9 LINE L1 -291 6021 4336 291 333 16 47 chr1 212877499 212877628 -29786725 - MIR SINE MIR -50 212 88 246 32 0 0 chr1 212878189 212878220 -29786133 + (CA)n Simple_repeat Simple_repeat 2 32 0 2262 185 125 0 chr1 212878364 212878796 -29785557 - MER66B LTR ERV1 0 486 1 514 281 45 51 chr1 212880360 212880538 -29783815 + MER5B DNA MER1_type 2 178 0 225 159 0 0 chr1 212881564 212881608 -29782745 + GA-rich Low_complexity Low_complexity 2 45 0 358 318 0 19 chr1 212883065 212883172 -29781181 - L2 LINE L2 0 3272 3168 2517 47 0 13 chr1 212883661 212883959 -29780394 - AluY SINE Alu -16 295 2 541 268 0 0 chr1 212884141 212884253 -29780100 - MER81 DNA DNA -2 112 1 323 381 101 8 chr1 212884331 212884458 -29779895 - L2 LINE L2 -780 2534 2420 360 0 0 0 chr1 212884458 212884498 -29779855 + (TG)n Simple_repeat Simple_repeat 2 41 0 323 381 101 8 chr1 212884498 212884856 -29779497 - L2 LINE L2 -894 2420 2004 386 323 83 36 chr1 212884887 212885163 -29779190 + L1M4 LINE L1 4111 4399 -1747 404 335 12 3 chr1 212885171 212885357 -29778996 - MIR SINE MIR -16 246 6 293 289 99 67 chr1 212885394 212885920 -29778433 + L1M4 LINE L1 4408 4950 -1196 1150 239 150 18 chr1 212886172 212886553 -29777800 - MSTB2 LTR MaLR 0 457 27 1622 190 0 43 chr1 212887048 212887374 -29776979 + AluJo SINE Alu 1 312 0 500 329 68 41 chr1 212887404 212888292 -29776061 + L1ME3A LINE L1 565 1471 -4658 2132 125 3 0 chr1 212888292 212888589 -29775764 + AluSq SINE Alu 3 300 -13 500 329 68 41 chr1 212888589 212888803 -29775550 + L1ME3A LINE L1 1471 1678 -4451 2198 105 0 3 chr1 212888846 212889142 -29775211 + AluSq SINE Alu 1 295 -18 21 0 0 0 chr1 212889184 212889205 -29775148 + AT_rich Low_complexity Low_complexity 1 21 0 235 220 20 0 chr1 212889374 212889424 -29774929 - MLT1G1 LTR MaLR -10 585 535 2104 134 116 16 chr1 212889428 212889809 -29774544 + MSTA LTR MaLR 10 428 0 369 250 142 27 chr1 212889828 212890088 -29774265 + L1ME3A LINE L1 4098 4387 -1742 597 289 72 43 chr1 212890207 212890485 -29773868 + L1ME3A LINE L1 4727 4995 -1134 2227 102 0 3 chr1 212890485 212890779 -29773574 + AluSg SINE Alu 1 293 -17 597 289 72 43 chr1 212890779 212891082 -29773271 + L1ME3A LINE L1 4995 5325 -804 332 245 63 35 chr1 212891107 212891250 -29773103 + L1ME3A LINE L1 5443 5589 -556 423 0 0 0 chr1 212891583 212891630 -29772723 + (CA)n Simple_repeat Simple_repeat 2 48 0 334 256 114 62 chr1 212891639 212891815 -29772538 + L1ME3A LINE L1 5969 6153 0 316 128 0 0 chr1 212891903 212891950 -29772403 + L1ME3A LINE L1 6089 6135 -35 6096 67 2 8 chr1 212892989 212893784 -29770569 + L1PA7 LINE L1 5364 6154 0 28 0 0 0 chr1 212894135 212894163 -29770190 + AT_rich Low_complexity Low_complexity 1 28 0 469 237 40 104 chr1 212895417 212895695 -29768658 + L2 LINE L2 3048 3307 -6 21 36 0 0 chr1 212895865 212895893 -29768460 + AT_rich Low_complexity Low_complexity 1 28 0 522 348 170 30 chr1 212896246 212896304 -29768049 + L3 LINE CR1 1013 1062 -515 180 0 0 0 chr1 212896304 212896324 -29768029 + (TA)n Simple_repeat Simple_repeat 2 21 0 2297 86 7 0 chr1 212896327 212896619 -29767734 - AluSq SINE Alu -19 294 1 522 348 170 30 chr1 212896619 212896950 -29767403 + L3 LINE CR1 1063 1461 -116 231 227 127 82 chr1 212897094 212897204 -29767149 + LTR40a LTR ERVL 16 130 -389 398 20 20 0 chr1 212897547 212897598 -29766755 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 532 356 110 7 chr1 212899009 212899290 -29765063 + L3 LINE CR1 1258 1567 -10 306 239 46 46 chr1 212899811 212899920 -29764433 - MER103 DNA DNA -6 160 52 321 229 10 62 chr1 212899984 212900080 -29764273 - MIR3 SINE MIR -28 180 90 1185 241 103 32 chr1 212900673 212901042 -29763311 + MSTD LTR MaLR 2 396 0 4649 235 63 80 chr1 212901044 212901519 -29762834 + MSTD-int LTR MaLR 2 484 -1251 2138 88 7 7 chr1 212901519 212901856 -29762497 - AluSx SINE Alu 0 337 1 4649 235 63 80 chr1 212901856 212903143 -29761210 + MSTD-int LTR MaLR 484 1735 0 1354 211 67 46 chr1 212903143 212903531 -29760822 + MSTD LTR MaLR 1 396 0 748 172 120 52 chr1 212904182 212904374 -29759979 + MER3 DNA MER1_type 5 209 0 2135 118 0 7 chr1 212904590 212904886 -29759467 + AluSx SINE Alu 1 294 -18 245 335 112 26 chr1 212906229 212906381 -29757972 - L3 LINE CR1 -3 1574 1410 816 247 46 27 chr1 212906401 212906705 -29757648 - L1ME3A LINE L1 -4 6166 5853 * 1196 218 62 13 chr1 212906699 212907006 -29757347 + L1ME3A LINE L1 5541 5862 -308 291 130 19 19 chr1 212908001 212908055 -29756298 + HSMAR2 DNA Mariner 2 55 -1247 182 37 37 0 chr1 212908096 212908123 -29756230 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5699 148 53 3 chr1 212908126 212909076 -29755277 + HSMAR2 DNA Mariner 41 1037 -265 359 205 26 13 chr1 212909082 212909160 -29755193 - L2 LINE L2 -13 3300 3222 1071 280 73 79 chr1 212909276 212909755 -29754598 - MER115 DNA AcHobo -84 609 134 337 216 36 0 chr1 212910000 212910139 -29754214 + (TA)n Simple_repeat Simple_repeat 1 144 0 603 183 0 0 chr1 212911310 212911436 -29752917 + CT-rich Low_complexity Low_complexity 2 127 0 252 284 15 15 chr1 212911463 212911530 -29752823 - L2 LINE L2 -9 3304 3238 21 57 0 0 chr1 212914639 212914674 -29749679 + AT_rich Low_complexity Low_complexity 1 35 0 1822 125 29 18 chr1 212915376 212915683 -29748670 + AluSx SINE Alu 1 310 0 9132 167 20 20 chr1 212915894 212918579 -29745774 - L1MA8 LINE L1 -1 6290 3606 517 248 34 20 chr1 212918948 212919097 -29745256 + MLT1J LTR MaLR 293 443 -68 250 357 60 25 chr1 212919304 212919503 -29744850 - L2 LINE L2 -150 3163 2958 671 357 25 15 chr1 212919583 212919978 -29744375 - L2 LINE L2 -456 2858 2460 1014 253 55 72 chr1 212920036 212920440 -29743913 - MLT1J2 LTR MaLR -22 428 32 271 298 94 31 chr1 212921506 212921697 -29742656 - MIR SINE MIR 0 262 60 211 306 49 111 chr1 212921977 212922121 -29742232 + L2 LINE L2 3179 3313 0 324 308 9 28 chr1 212922318 212922425 -29741928 + MIR SINE MIR 109 213 -49 249 239 92 55 chr1 212925292 212925401 -29738952 + MIR3 SINE MIR 90 202 -6 1878 168 0 19 chr1 212925585 212925901 -29738452 - AluJb SINE Alu -2 310 1 1900 143 58 30 chr1 212929608 212929973 -29734380 - THE1C LTR MaLR 0 375 1 9447 144 6 35 chr1 212929973 212931597 -29732756 - THE1C-int LTR MaLR 0 1580 4 1759 161 64 25 chr1 212931600 212931961 -29732392 - THE1C LTR MaLR 0 375 1 736 259 35 5 chr1 212932081 212932278 -29732075 - MER20 DNA MER1_type 0 219 17 248 49 49 0 chr1 212935200 212935241 -29729112 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 2292 68 14 3 chr1 212936480 212936798 -29727555 + AluY SINE Alu 1 311 0 218 244 0 0 chr1 212938857 212938898 -29725455 + L2 LINE L2 1417 1457 -1857 417 287 207 0 chr1 212938935 212939085 -29725268 - MER5A DNA MER1_type -1 188 8 262 296 35 17 chr1 212939113 212939228 -29725125 + MER117 DNA MER1_type 52 168 -29 24 91 0 0 chr1 212939656 212939722 -29724631 + AT_rich Low_complexity Low_complexity 1 66 0 331 330 0 11 chr1 212939829 212939917 -29724436 + MIR3 SINE MIR 14 100 -108 1164 185 0 0 chr1 212939920 212940131 -29724222 - Tigger5 DNA MER2_type 0 2323 2113 1434 246 10 0 chr1 212940140 212940441 -29723912 - Tigger5 DNA MER2_type -2019 304 1 261 0 0 0 chr1 212940444 212940473 -29723880 + (TG)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 212940593 212940618 -29723735 + AT_rich Low_complexity Low_complexity 1 25 0 342 0 0 0 chr1 212940777 212940815 -29723538 + (TG)n Simple_repeat Simple_repeat 1 38 0 31 0 0 0 chr1 212941195 212941226 -29723127 + AT_rich Low_complexity Low_complexity 1 31 0 507 135 11 0 chr1 212941227 212941316 -29723037 - L1MB1 LINE L1 -7 6161 6072 812 139 0 0 chr1 212943509 212943624 -29720729 + AluSq/x SINE Alu 3 117 -196 1377 124 5 0 chr1 212943624 212943817 -29720536 + AluSg/x SINE Alu 84 277 -35 197 65 32 0 chr1 212943824 212943855 -29720498 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1324 86 0 0 chr1 212944024 212944199 -29720154 - AluY SINE Alu -1 310 136 204 307 40 0 chr1 212946263 212946338 -29718015 - L2 LINE L2 -270 3002 2925 1935 150 7 3 chr1 212946339 212946639 -29717714 + AluSx SINE Alu 1 301 -11 264 371 91 7 chr1 212947402 212947545 -29716808 - MIR SINE MIR -88 174 20 530 198 0 0 chr1 212949762 212949863 -29714490 - L1P LINE L1 -4308 1838 1738 4914 107 18 8 chr1 212949863 212950580 -29713773 + L1PA10 LINE L1 5435 6158 -10 346 181 14 0 chr1 212951091 212951163 -29713190 - LTR50 LTR ERVL -111 684 612 794 265 175 6 chr1 212951180 212951505 -29712848 - LTR50 LTR ERVL -333 462 83 870 241 157 15 chr1 212951623 212951947 -29712406 - LTR50 LTR ERVL -425 370 1 729 315 88 39 chr1 212952890 212953252 -29711101 + L2 LINE L2 2891 3270 -43 40 37 0 0 chr1 212953436 212953490 -29710863 + AT_rich Low_complexity Low_complexity 1 54 0 652 298 138 45 chr1 212953530 212953956 -29710397 - MLT1K LTR MaLR 0 588 123 623 237 47 18 chr1 212954565 212954734 -29709619 - MIR SINE MIR -31 231 58 5337 106 23 11 chr1 212954750 212955592 -29708761 - L1MA1 LINE L1 0 6302 5451 2097 63 4 0 chr1 212955862 212956115 -29708238 + AluY SINE Alu 1 254 -57 208 163 194 122 chr1 212956472 212956570 -29707783 + L2 LINE L2 3168 3272 0 912 306 135 9 chr1 212956675 212957113 -29707240 - LTR67 LTR ERVL -8 549 57 25 0 0 0 chr1 212957483 212957508 -29706845 + AT_rich Low_complexity Low_complexity 1 25 0 2332 98 0 9 chr1 212958268 212958584 -29705769 + AluSq SINE Alu 1 313 0 197 327 93 9 chr1 212958729 212958836 -29705517 + L2 LINE L2 2659 2774 -540 1973 102 62 81 chr1 212958933 212959304 -29705049 - THE1B LTR MaLR 0 364 1 185 345 134 7 chr1 212959423 212959565 -29704788 - MIR SINE MIR -1 261 102 889 253 26 9 chr1 212960363 212960592 -29703761 - MIR SINE MIR 0 262 30 2041 134 0 10 chr1 212961924 212962222 -29702131 + AluSg SINE Alu 1 295 -15 346 307 41 26 chr1 212962397 212962597 -29701756 + MIR3 SINE MIR 13 212 -50 344 193 0 19 chr1 212962697 212962817 -29701536 - MLT1F1 LTR MaLR 0 542 402 590 264 75 62 chr1 212963654 212964093 -29700260 - LTR16A LTR ERVL -12 438 1 1264 177 58 42 chr1 212964211 212964590 -29699763 - Charlie1b DNA MER1_type 0 523 139 327 286 168 35 chr1 212964700 212964903 -29699450 - L2 LINE L2 -688 2626 2397 861 290 70 8 chr1 212964961 212965316 -29699037 - LTR16A1 LTR ERVL 0 457 81 1408 190 49 52 chr1 212965316 212965685 -29698668 - MER39 LTR ERV1 0 707 340 277 230 128 16 chr1 212965686 212965799 -29698554 - MER39 LTR ERV1 -588 119 1 9336 148 27 12 chr1 212966743 212968366 -29695987 - Tigger1 DNA MER2_type -740 1678 28 1357 37 0 0 chr1 212968366 212968530 -29695823 + L1PA4 LINE L1 5989 6152 -3 9336 148 27 12 chr1 212968530 212968558 -29695795 - Tigger1 DNA MER2_type -2390 28 2 434 263 31 51 chr1 212969794 212970049 -29694304 - MER112 DNA MER1_type -2 254 5 229 153 17 17 chr1 212970305 212970364 -29693989 + CT-rich Low_complexity Low_complexity 3 61 0 386 357 34 15 chr1 212970505 212970771 -29693582 + L2 LINE L2 2575 2845 -469 2408 109 19 25 chr1 212971030 212971396 -29692957 + THE1B LTR MaLR 1 364 0 251 337 34 0 chr1 212972102 212972199 -29692154 - MIR SINE MIR -24 184 79 267 103 0 0 chr1 212972785 212972824 -29691529 + (A)n Simple_repeat Simple_repeat 1 39 0 202 227 0 0 chr1 212975048 212975092 -29689261 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 250 172 65 75 chr1 212975989 212976082 -29688271 + L1MC4 LINE L1 6614 6705 -1337 283 147 75 22 chr1 212976158 212976475 -29687878 + (TA)n Simple_repeat Simple_repeat 1 333 0 207 171 0 0 chr1 212976530 212976565 -29687788 + (CA)n Simple_repeat Simple_repeat 1 35 0 424 302 82 56 chr1 212976622 212976927 -29687426 - LTR16C LTR ERVL -178 313 1 639 272 105 17 chr1 212977018 212977257 -29687096 + L3 LINE CR1 688 947 -630 559 294 116 38 chr1 212977349 212977641 -29686712 + L3 LINE CR1 1262 1576 -1 180 152 0 0 chr1 212978924 212978957 -29685396 + (CA)n Simple_repeat Simple_repeat 2 34 0 732 156 57 0 chr1 212979075 212979197 -29685156 + AluJb SINE Alu 5 133 -179 321 26 0 0 chr1 212979247 212979285 -29685068 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1698 178 25 0 chr1 212979288 212979563 -29684790 - AluJb SINE Alu -29 283 2 1058 197 129 57 chr1 212980551 212981136 -29683217 - L1ME LINE L1 -487 5957 5341 207 0 0 0 chr1 212981138 212981161 -29683192 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 76 76 0 chr1 212981163 212981229 -29683124 + (TA)n Simple_repeat Simple_repeat 1 71 0 1803 199 101 21 chr1 212981232 212981668 -29682685 - MLT2B1 LTR ERVL -40 480 10 456 156 10 10 chr1 212981895 212981991 -29682362 - L1ME LINE L1 -1436 4990 4895 1228 211 59 61 chr1 212981998 212982454 -29681899 - L1ME LINE L1 -1700 4726 4272 * 10410 107 58 19 chr1 212982451 212984663 -29679690 - L1PBa LINE L1 -3774 3088 634 1188 159 0 5 chr1 212984663 212984864 -29679489 - L1PBa LINE L1 -6663 200 1 334 270 81 21 chr1 212984848 212985065 -29679288 - L1ME LINE L1 -4595 2012 1619 * 229 232 36 18 chr1 212985065 212985177 -29679176 + (TTATA)n Simple_repeat Simple_repeat 1 114 0 245 238 38 29 chr1 212985188 212985293 -29679060 - L1ME LINE L1 -4869 1557 1452 432 324 104 17 chr1 212985398 212985685 -29678668 - L1ME LINE L1 -6023 584 273 427 233 37 55 chr1 212985744 212985907 -29678446 + L1MC4 LINE L1 6637 6796 -1246 520 318 55 20 chr1 212985969 212986315 -29678038 + L1M4 LINE L1 4331 4688 -1458 2284 143 5 24 chr1 212986495 212986866 -29677487 + THE1B LTR MaLR 1 364 0 10803 97 39 1 chr1 212986866 212988388 -29675965 + THE1B-int LTR MaLR 1 1580 0 2093 142 25 30 chr1 212988388 212988754 -29675599 + THE1B LTR MaLR 1 364 0 1269 282 111 51 chr1 212990761 212991473 -29672880 + L2 LINE L2 2220 2974 -340 275 243 19 19 chr1 212992029 212992132 -29672221 + (TATG)n Simple_repeat Simple_repeat 2 104 0 350 140 0 0 chr1 212994034 212994091 -29670262 - MLT2C2 LTR ERVL 0 520 464 236 162 0 15 chr1 212994120 212994188 -29670165 + GA-rich Low_complexity Low_complexity 2 68 0 1496 166 41 7 chr1 212994189 212994517 -29669836 - MLT2C2 LTR ERVL -60 337 1 609 351 16 11 chr1 212994748 212994933 -29669420 + MER91A DNA MER1_type 1 186 -10 207 311 0 0 chr1 212994970 212995015 -29669338 + MER91A DNA MER1_type 133 177 -13 216 0 0 0 chr1 212995473 212995497 -29668856 + (T)n Simple_repeat Simple_repeat 1 24 0 395 329 68 18 chr1 212996293 212996515 -29667838 - MIR SINE MIR -12 250 18 236 290 191 22 chr1 212996590 212996773 -29667580 + MIR SINE MIR 17 230 -32 1426 238 51 70 chr1 212997746 212998217 -29666136 - MLT1C LTR MaLR 0 467 6 720 214 91 85 chr1 212998487 212998805 -29665548 + MER46C DNA MER2_type 5 324 -14 722 218 79 0 chr1 212998888 212999053 -29665300 + MER5B DNA MER1_type 1 178 0 1572 224 31 80 chr1 212999210 212999368 -29664985 + MLT1C LTR MaLR 1 165 -302 2304 89 0 10 chr1 212999368 212999672 -29664681 - AluSp SINE Alu -12 301 1 1572 224 31 80 chr1 212999672 212999991 -29664362 + MLT1C LTR MaLR 165 455 -12 654 306 60 4 chr1 213000141 213000373 -29663980 - MIR SINE MIR 0 262 18 186 43 0 0 chr1 213000845 213000868 -29663485 + (TC)n Simple_repeat Simple_repeat 2 24 0 333 300 143 38 chr1 213001064 213001274 -29663079 - MIR SINE MIR -3 259 28 23 0 0 0 chr1 213002016 213002039 -29662314 + AT_rich Low_complexity Low_complexity 1 23 0 399 275 34 54 chr1 213002118 213002267 -29662086 + MLT1J2 LTR MaLR 15 160 -290 355 235 77 104 chr1 213002642 213002825 -29661528 - L1ME LINE L1 -2954 3126 2949 1718 260 92 52 chr1 213002825 213003107 -29661246 - L1ME LINE L1 -3435 2645 2376 2192 113 0 0 chr1 213003107 213003399 -29660954 - AluY SINE Alu -19 292 1 1718 260 92 52 chr1 213003399 213005259 -29659094 - L1ME LINE L1 -3704 2376 431 599 280 37 16 chr1 213005312 213005501 -29658852 - L1ME LINE L1 -5846 224 32 371 195 119 40 chr1 213005505 213005613 -29658740 + MLT1I LTR MaLR 316 407 -2 2244 85 21 3 chr1 213007203 213007533 -29656820 - L1PA13 LINE L1 0 6163 5828 790 297 51 56 chr1 213007559 213007949 -29656404 + L2 LINE L2 2926 3313 0 180 259 0 35 chr1 213009881 213009939 -29654414 + L2 LINE L2 3208 3263 -50 1406 191 3 85 chr1 213010129 213010458 -29653895 + AluJb SINE Alu 1 302 -10 452 326 67 10 chr1 213013645 213013838 -29650515 + MIR SINE MIR 9 212 -50 915 234 156 47 chr1 213014438 213014822 -29649531 - MLT1H LTR MaLR -1 548 123 244 343 59 20 chr1 213014964 213015066 -29649287 - L2 LINE L2 -42 3271 3166 186 43 0 0 chr1 213016464 213016487 -29647866 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 436 302 93 17 chr1 213016643 213016815 -29647538 + MIR SINE MIR 46 230 -32 1048 200 13 40 chr1 213017041 213017266 -29647087 + MER58A DNA MER1_type 6 224 0 265 303 33 74 chr1 213018664 213018867 -29645486 - MIR SINE MIR -36 226 30 2010 160 21 24 chr1 213018983 213019359 -29644994 + THE1C LTR MaLR 1 375 0 8902 135 84 6 chr1 213019361 213020824 -29643529 + THE1C-int LTR MaLR 3 1580 0 2062 148 19 24 chr1 213020824 213021201 -29643152 + THE1C LTR MaLR 1 375 0 392 290 136 18 chr1 213022571 213022740 -29641613 + MER91A DNA MER1_type 5 193 -3 400 324 133 23 chr1 213023534 213023843 -29640510 + L1ME4a LINE L1 5024 5366 -780 241 271 65 47 chr1 213023875 213023982 -29640371 + L1ME4a LINE L1 5431 5539 -582 236 297 50 0 chr1 213023996 213024097 -29640256 - L2 LINE L2 -58 3255 3150 242 268 82 21 chr1 213024820 213024917 -29639436 + L1ME4a LINE L1 5984 6086 -35 420 262 81 67 chr1 213025443 213025878 -29638475 - L1ME4a LINE L1 -2 6119 5679 2199 101 3 0 chr1 213025991 213026277 -29638076 - AluSp SINE Alu -15 298 12 2382 142 41 12 chr1 213026955 213027371 -29636982 + MSTA LTR MaLR 1 428 0 1549 48 0 5 chr1 213027469 213027656 -29636697 - AluY SINE Alu -16 295 110 252 323 82 45 chr1 213027794 213028014 -29636339 + MIR SINE MIR 2 229 -33 734 302 111 43 chr1 213028017 213028499 -29635854 + L2 LINE L2 2796 3304 -9 499 273 107 58 chr1 213028951 213029259 -29635094 - MLT1J1 LTR MaLR -123 323 1 25 0 0 0 chr1 213029280 213029305 -29635048 + AT_rich Low_complexity Low_complexity 1 25 0 5713 183 87 66 chr1 213029617 213031179 -29633174 - MER52A LTR ERV1 0 1755 1 360 359 47 27 chr1 213031463 213031719 -29632634 - HAL1 LINE L1 -1130 1377 1117 240 353 23 73 chr1 213031833 213032094 -29632259 - L2 LINE L2 -195 3077 2830 242 289 50 72 chr1 213032508 213032688 -29631665 - L2 LINE L2 -1319 1995 1820 30 89 0 0 chr1 213033920 213033999 -29630354 + AT_rich Low_complexity Low_complexity 1 79 0 3999 127 36 0 chr1 213034000 213034639 -29629714 - L1PA15 LINE L1 -243 6573 5912 246 182 0 0 chr1 213034648 213034703 -29629650 - L1PA15 LINE L1 -857 5960 5906 2576 244 9 13 chr1 213034709 213035385 -29628968 - L1PA15 LINE L1 -3027 3770 3098 216 0 0 0 chr1 213035385 213035409 -29628944 + (TA)n Simple_repeat Simple_repeat 2 25 0 483 15 22 88 chr1 213035447 213035584 -29628769 + (TA)n Simple_repeat Simple_repeat 2 129 0 6133 220 12 25 chr1 213035737 213037804 -29626549 - L1PA15 LINE L1 -3688 3109 1059 245 250 16 16 chr1 213037806 213037870 -29626483 - L2 LINE L2 -41 3272 3209 400 209 66 51 chr1 213037921 213038117 -29626236 - L1ME LINE L1 -429 5692 5494 23 92 0 0 chr1 213038838 213038903 -29625450 + AT_rich Low_complexity Low_complexity 1 65 0 2298 69 7 3 chr1 213039021 213039311 -29625042 - AluSp SINE Alu -18 295 5 678 298 101 9 chr1 213039387 213039605 -29624748 + MIR SINE MIR 20 257 -5 431 293 99 16 chr1 213039608 213039922 -29624431 - L1ME4a LINE L1 -219 5971 5632 198 0 0 0 chr1 213039968 213039990 -29624363 + (T)n Simple_repeat Simple_repeat 1 22 0 2131 68 4 0 chr1 213040104 213040370 -29623983 - AluY SINE Alu -44 267 1 332 256 70 64 chr1 213040405 213040577 -29623776 - L1ME4a LINE L1 -2323 5554 5382 194 388 41 0 chr1 213041795 213041916 -29622437 - L3 LINE CR1 -19 1558 1433 25 75 0 0 chr1 213043102 213043155 -29621198 + AT_rich Low_complexity Low_complexity 1 53 0 471 220 93 8 chr1 213043540 213043658 -29620695 + FLAM_C SINE Alu 3 130 -3 192 220 17 34 chr1 213044026 213044085 -29620268 - L2 LINE L2 0 3313 3256 1651 272 54 74 chr1 213044117 213044870 -29619483 + MER21B LTR ERV1 1 738 -125 611 304 28 18 chr1 213044923 213045209 -29619144 + L1 LINE L1 3670 3958 -2188 237 171 143 0 chr1 213045344 213045414 -29618939 + L1MA4 LINE L1 6221 6300 0 231 247 12 0 chr1 213045410 213045491 -29618862 + L1MEc LINE L1 811 892 -5504 * 249 330 0 0 chr1 213045495 213045601 -29618752 - L1ME4a LINE L1 -1554 4661 4556 571 271 50 9 chr1 213045652 213045870 -29618483 + L1 LINE L1 4019 4245 -1901 1335 126 5 0 chr1 213045995 213046186 -29618167 - AluSp SINE Alu -40 273 82 799 180 53 0 chr1 213046292 213046481 -29617872 - L1MA4 LINE L1 -2 6298 6100 29 0 0 0 chr1 213046783 213046812 -29617541 + AT_rich Low_complexity Low_complexity 1 29 0 3461 202 44 12 chr1 213047351 213047515 -29616838 - L1MC3 LINE L1 -1005 6780 6623 2327 88 0 0 chr1 213047515 213047809 -29616544 - AluSc SINE Alu -15 294 1 3461 202 44 12 chr1 213047809 213048391 -29615962 - L1MC3 LINE L1 -1162 6623 6010 746 251 60 26 chr1 213048397 213048664 -29615689 - L1MCa LINE L1 -5077 1487 1212 513 160 0 30 chr1 213048689 213048789 -29615564 - FLAM_A SINE Alu -4 138 42 876 266 42 0 chr1 213048807 213049115 -29615238 - L1MCa LINE L1 -4848 1197 877 * 1325 261 110 10 chr1 213049114 213049723 -29614630 - L1ME4a LINE L1 -3016 3199 2530 2524 168 9 5 chr1 213049731 213050154 -29614199 - Tigger2a DNA MER2_type 0 434 10 980 237 85 100 chr1 213050169 213051127 -29613226 - L1MEc LINE L1 -3717 2498 1581 3049 169 47 11 chr1 213051307 213051481 -29612872 - L1MA5A LINE L1 -1 6296 6130 288 77 0 0 chr1 213051481 213051520 -29612833 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 3049 169 47 11 chr1 213051520 213051968 -29612385 - L1MA5A LINE L1 -167 6130 5652 2717 164 7 12 chr1 213051980 213052646 -29611707 - L1MA5A LINE L1 -743 5403 4826 1565 126 33 0 chr1 213052655 213052926 -29611427 + L1MA5A LINE L1 4518 4797 -1349 337 273 92 24 chr1 213052928 213053122 -29611231 - L1MEc LINE L1 -4981 1254 1075 2101 137 36 38 chr1 213053122 213053487 -29610866 - THE1B LTR MaLR 0 364 1 337 273 92 24 chr1 213053487 213053731 -29610622 - L1MEc LINE L1 -5160 1075 794 223 85 43 0 chr1 213053976 213054023 -29610330 + T-rich Low_complexity Low_complexity 2 50 0 207 0 0 0 chr1 213054145 213054168 -29610185 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 401 248 35 35 chr1 213054294 213054344 -29610009 - L1MEc LINE L1 -5878 327 278 2172 122 0 0 chr1 213054344 213054647 -29609706 - AluSp SINE Alu -10 303 1 401 248 35 35 chr1 213054647 213054737 -29609616 - L1MEc LINE L1 -5926 279 187 212 271 68 0 chr1 213054776 213054835 -29609518 + L2 LINE L2 3210 3272 0 24 0 0 0 chr1 213055314 213055338 -29609015 + AT_rich Low_complexity Low_complexity 1 24 0 2489 244 23 3 chr1 213055872 213056597 -29607756 + L1M4 LINE L1 2461 3200 -2946 2732 177 54 18 chr1 213056629 213057877 -29606476 - L1MCa LINE L1 -4913 1513 119 255 103 0 0 chr1 213059285 213059324 -29605029 + (TG)n Simple_repeat Simple_repeat 1 39 0 227 299 21 52 chr1 213059524 213059621 -29604732 - MIR SINE MIR -166 96 3 288 53 0 0 chr1 213060121 213060159 -29604194 + (CA)n Simple_repeat Simple_repeat 2 39 0 364 337 64 25 chr1 213062143 213062345 -29602008 - L2 LINE L2 -205 3108 2899 21 0 0 0 chr1 213062349 213062370 -29601983 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 213062823 213062844 -29601509 + AT_rich Low_complexity Low_complexity 1 21 0 9587 195 67 48 chr1 213063284 213066509 -29597844 + L1MCa LINE L1 26 3314 -3112 3517 264 66 14 chr1 213066569 213067398 -29596955 + L1MB7 LINE L1 189 1092 -5450 180 0 0 0 chr1 213067398 213067418 -29596935 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3517 264 66 14 chr1 213067418 213067700 -29596653 + L1MB7 LINE L1 1092 1358 -5184 20998 166 17 8 chr1 213067706 213071313 -29593040 + L1MA3 LINE L1 17 3656 -3909 6260 125 13 24 chr1 213071313 213072206 -29592147 + L1MA3 LINE L1 6673 7554 -170 1936 141 0 3 chr1 213072206 213072505 -29591848 + AluSx SINE Alu 1 298 -14 6260 125 13 24 chr1 213072505 213072675 -29591678 + L1MA3 LINE L1 7554 7724 0 3647 245 49 75 chr1 213072676 213073165 -29591188 + L1MB7 LINE L1 1323 1823 -4821 1927 159 0 0 chr1 213073165 213073461 -29590892 - AluSx SINE Alu -16 296 1 3647 245 49 75 chr1 213073461 213073756 -29590597 + L1MB7 LINE L1 1823 2124 -4520 2109 222 32 48 chr1 213073756 213074319 -29590034 - MLT2B3 LTR ERVL 0 554 1 3647 245 49 75 chr1 213074319 213074573 -29589780 + L1MB7 LINE L1 2124 2383 -4261 2184 173 16 0 chr1 213074573 213074955 -29589398 - MLT1B LTR MaLR -2 388 1 3647 245 49 75 chr1 213074955 213076433 -29587920 + L1MB7 LINE L1 2383 3918 -2726 * 4890 216 57 25 chr1 213076407 213078389 -29585964 + L1MB7 LINE L1 4248 6323 -359 6492 146 61 7 chr1 213078389 213079226 -29585127 + Tigger3b DNA MER2_type 1 920 -2108 209 33 33 0 chr1 213079226 213079256 -29585097 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 6492 146 61 7 chr1 213079256 213079586 -29584767 + Tigger3b DNA MER2_type 920 1231 0 4890 216 57 25 chr1 213079586 213079931 -29584422 + L1MB7 LINE L1 6323 6655 -27 363 235 38 68 chr1 213079950 213080082 -29584271 + HAL1 LINE L1 947 1074 -1433 1189 260 92 34 chr1 213080100 213080666 -29583687 + HAL1 LINE L1 1630 2228 -279 259 265 122 20 chr1 213080747 213080845 -29583508 + MLT1I LTR MaLR 75 182 -227 920 201 6 0 chr1 213081187 213081351 -29583002 + AluJo SINE Alu 1 165 -147 237 279 44 70 chr1 213081376 213081534 -29582819 + HAL1 LINE L1 2347 2500 -7 2018 119 0 24 chr1 213082672 213082967 -29581386 + AluSx SINE Alu 1 288 -24 525 327 122 27 chr1 213084584 213084954 -29579399 - L2 LINE L2 -1 3312 2908 1329 158 37 20 chr1 213085036 213085469 -29578884 + LTR54 LTR ERV1 1 506 -4 829 307 83 0 chr1 213085486 213085776 -29578577 + MER57-int LTR ERV1 1927 2240 -4091 1695 156 48 43 chr1 213085815 213086188 -29578165 + THE1C LTR MaLR 1 375 0 261 188 0 43 chr1 213086268 213086337 -29578016 + MER57-int LTR ERV1 437 502 -7035 1266 220 18 115 chr1 213086337 213086940 -29577413 + MER57-int LTR ERV1 467 2558 -3773 772 238 16 0 chr1 213087036 213087221 -29577132 + MER57-int LTR ERV1 842 1029 -4094 504 229 94 49 chr1 213087310 213087607 -29576746 - MER34 LTR ERV1 -290 354 1 2698 207 21 13 chr1 213087682 213088204 -29576149 + Tigger7 DNA MER2_type 1 526 -1961 573 191 0 0 chr1 213088199 213088288 -29576065 + Tigger7 DNA MER2_type 2397 2485 -2 * 1988 157 72 169 chr1 213088288 213089093 -29575260 + LTR8A LTR ERV1 1 727 0 3646 258 70 52 chr1 213089133 213091930 -29572423 + MER57-int LTR ERV1 1716 4110 -761 321 373 6 13 chr1 213091865 213092023 -29572330 + MER70-int LTR ERVL 3642 3798 -1225 * 1790 250 88 3 chr1 213092093 213092576 -29571777 + MER57-int LTR ERV1 4182 7113 -424 1294 138 53 20 chr1 213092576 213092948 -29571405 + LTR54 LTR ERV1 50 501 -9 301 261 169 23 chr1 213092988 213093118 -29571235 + L2 LINE L2 2230 2378 -936 1483 164 19 45 chr1 213093142 213093326 -29571027 - AluJb SINE Alu -18 294 118 2103 148 117 13 chr1 213093326 213093712 -29570641 - MSTA LTR MaLR 0 428 3 1483 164 19 45 chr1 213093712 213093796 -29570557 - AluJb SINE Alu -194 118 33 221 270 16 0 chr1 213093889 213093952 -29570401 - L2 LINE L2 -5 3308 3245 630 264 17 28 chr1 213094141 213094319 -29570034 - MIR SINE MIR -25 237 62 1605 97 0 0 chr1 213094349 213094555 -29569798 - AluSc SINE Alu -103 206 1 570 291 26 55 chr1 213095064 213095408 -29568945 + L2 LINE L2 2297 2630 -684 725 213 6 0 chr1 213097030 213097204 -29567149 + GA-rich Low_complexity Low_complexity 4 178 0 343 233 8 25 chr1 213097219 213097339 -29567014 + G-rich Low_complexity Low_complexity 5 122 0 791 240 19 24 chr1 213097797 213098005 -29566348 + MIR SINE MIR 31 237 -25 403 268 109 14 chr1 213098185 213098478 -29565875 + MLT1J2 LTR MaLR 67 399 -10 1557 230 14 14 chr1 213100424 213100772 -29563581 + MLT2D LTR ERVL 2 349 -65 239 198 136 12 chr1 213100831 213100896 -29563457 + L1MC4 LINE L1 6613 6691 -1351 548 114 0 0 chr1 213100896 213100975 -29563378 + MADE1 DNA Mariner 2 80 0 239 198 136 12 chr1 213100975 213100990 -29563363 + L1MC4 LINE L1 6691 6703 -1339 245 182 18 0 chr1 213100991 213101046 -29563307 + (TA)n Simple_repeat Simple_repeat 1 56 0 311 96 39 0 chr1 213101143 213101195 -29563158 + MLT2B1 LTR ERVL 467 520 0 1583 87 0 10 chr1 213101357 213101565 -29562788 - AluSg/x SINE Alu -1 309 104 199 395 13 0 chr1 213102166 213102242 -29562111 - L2 LINE L2 0 3313 3237 734 250 175 4 chr1 213102976 213103216 -29561137 + MLT2B2 LTR ERVL 161 441 -74 181 163 38 25 chr1 213103216 213103296 -29561057 + (TA)n Simple_repeat Simple_repeat 1 81 0 322 148 0 0 chr1 213103298 213103352 -29561001 + MLT2B2 LTR ERVL 467 520 0 413 237 0 18 chr1 213103353 213103467 -29560886 + ERVL-B2 LTR ERVL 2 113 -5651 924 221 171 0 chr1 213103467 213103789 -29560564 + L1MB1 LINE L1 869 1245 -4646 7219 211 20 27 chr1 213103794 213106346 -29558007 + L1MB1 LINE L1 3368 5905 -87 520 257 14 37 chr1 213106375 213106499 -29557854 + L1M3d LINE L1 2572 2690 -3280 2144 97 7 23 chr1 213106499 213106809 -29557544 - AluSp SINE Alu -8 305 1 520 257 14 37 chr1 213106809 213106898 -29557455 + L1M3d LINE L1 2690 2780 -3190 265 259 92 40 chr1 213106902 213107076 -29557277 - LTR41 LTR ERVL -6 767 585 233 167 0 0 chr1 213107383 213107425 -29556928 + AluSg/x SINE Alu 136 177 -126 950 116 7 0 chr1 213107428 213107566 -29556787 + AluSg/x SINE Alu 156 294 -16 361 250 58 35 chr1 213107704 213107876 -29556477 - LTR41 LTR ERVL -597 176 1 4077 224 108 98 chr1 213107876 213108724 -29555629 + L1ME1 LINE L1 2777 3615 -2375 2014 164 66 3 chr1 213108724 213109103 -29555250 + MER57A LTR ERV1 1 403 0 4077 224 108 98 chr1 213109103 213111382 -29552971 + L1ME1 LINE L1 3615 5925 -65 198 103 0 0 chr1 213114957 213114986 -29549367 + (TC)n Simple_repeat Simple_repeat 1 29 0 2027 154 0 0 chr1 213114986 213115292 -29549061 - AluSg SINE Alu -4 306 1 1969 151 45 0 chr1 213115870 213116201 -29548152 - MER7A DNA MER2_type 0 346 3 241 172 52 0 chr1 213116205 213116263 -29548090 - L1 LINE L1 -881 5265 5205 227 120 13 67 chr1 213116466 213116541 -29547812 + (TA)n Simple_repeat Simple_repeat 1 71 0 3941 178 64 12 chr1 213116545 213117128 -29547225 + L1MB7 LINE L1 5266 5817 -367 2058 123 57 23 chr1 213117128 213117479 -29546874 + THE1B LTR MaLR 1 363 -1 11905 88 1 0 chr1 213117480 213119058 -29545295 + THE1B-int LTR MaLR 1 1580 0 2073 135 48 25 chr1 213119059 213119414 -29544939 + THE1B LTR MaLR 2 364 0 3941 178 64 12 chr1 213119414 213119673 -29544680 + L1MB7 LINE L1 5816 6156 -28 3599 140 29 15 chr1 213119682 213120298 -29544055 - L1PB3 LINE L1 -3 6151 5527 389 268 66 60 chr1 213120585 213120768 -29543585 + L2 LINE L2 3092 3275 -38 970 57 0 0 chr1 213120775 213120898 -29543455 + L1PA3 LINE L1 6033 6155 0 257 264 0 0 chr1 213123403 213123456 -29540897 - L3 LINE CR1 -2 1575 1523 185 294 169 15 chr1 213123636 213123772 -29540581 - MIR3 SINE MIR -22 186 30 22 0 0 0 chr1 213124303 213124325 -29540028 + AT_rich Low_complexity Low_complexity 1 22 0 2857 72 0 3 chr1 213124478 213124851 -29539502 + L1PA10 LINE L1 5559 5930 -238 365 332 99 50 chr1 213125005 213125207 -29539146 + MER115 DNA AcHobo 142 353 -340 929 226 141 24 chr1 213125328 213125625 -29538728 + MER115 DNA AcHobo 362 693 0 393 326 140 34 chr1 213125628 213126014 -29538339 + L2 LINE L2 2258 2684 -630 241 225 150 25 chr1 213127379 213127459 -29536894 - MIR SINE MIR -50 212 123 9314 190 18 13 chr1 213127808 213129485 -29534868 - L1M1 LINE L1 -5865 1700 16 252 240 0 0 chr1 213129749 213129799 -29534554 + (TG)n Simple_repeat Simple_repeat 1 50 0 832 292 79 58 chr1 213130641 213131233 -29533120 + L2 LINE L2 2680 3288 -25 22 35 0 0 chr1 213131241 213131270 -29533083 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr1 213131344 213131371 -29532982 + AT_rich Low_complexity Low_complexity 1 27 0 352 389 20 0 chr1 213134019 213134168 -29530185 + MIR SINE MIR 20 171 -91 352 247 11 11 chr1 213134246 213134339 -29530014 - LTR67 LTR ERVL -7 550 458 330 221 45 80 chr1 213134672 213134871 -29529482 + L1ME3A LINE L1 2725 2916 -3230 * 14294 187 60 17 chr1 213134863 213141172 -29523181 + L1MA4 LINE L1 11 7719 0 397 254 96 28 chr1 213141212 213141389 -29522964 + L1ME3A LINE L1 2896 3084 -3062 790 295 96 22 chr1 213141405 213142405 -29521948 + L1ME3A LINE L1 3147 4220 -1926 2390 130 11 3 chr1 213142435 213142796 -29521557 + THE1B LTR MaLR 1 364 0 2780 121 19 2 chr1 213142796 213143209 -29521144 + THE1B-int LTR MaLR 1 420 -1160 6141 135 54 8 chr1 213143211 213144189 -29520164 + THE1B-int LTR MaLR 558 1580 0 2271 144 11 3 chr1 213144189 213144550 -29519803 + THE1B LTR MaLR 1 364 0 957 302 123 19 chr1 213144550 213146053 -29518300 + L1ME3A LINE L1 4249 5915 -255 244 310 58 30 chr1 213145763 213146055 -29518298 + L1MA8 LINE L1 5612 5915 -376 * 2280 178 47 7 chr1 213146055 213146498 -29517855 + LOR1b LTR ERV1 1 461 0 244 310 58 30 chr1 213146498 213146534 -29517819 + L1MA8 LINE L1 5915 5949 -342 1495 214 3 0 chr1 213146599 213146893 -29517460 + AluJo SINE Alu 1 295 -17 351 352 8 0 chr1 213147270 213147398 -29516955 - L2 LINE L2 -657 2657 2529 389 149 0 23 chr1 213147762 213147849 -29516504 - L1MA10 LINE L1 0 6334 6250 888 194 9 26 chr1 213147849 213147988 -29516365 - L1M4c LINE L1 -1629 4753 4618 4694 169 41 7 chr1 213147988 213148861 -29515492 + MER4D LTR ERV1 1 903 0 888 194 9 26 chr1 213148861 213148953 -29515400 - L1M4c LINE L1 -1764 4618 4526 246 220 0 0 chr1 213148977 213149036 -29515317 - L1M4c LINE L1 -2766 3616 3558 232 93 19 19 chr1 213149036 213149090 -29515263 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 19710 27 0 0 chr1 213149092 213152211 -29512142 - L1PA3 LINE L1 -1 6154 3036 1814 174 3 22 chr1 213152249 213152566 -29511787 - MER4E LTR ERV1 -92 687 377 785 242 8 38 chr1 213152570 213152908 -29511445 - L1M4c LINE L1 -3826 2556 2225 213 132 0 26 chr1 213152908 213152946 -29511407 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 1134 139 0 41 chr1 213152946 213153140 -29511213 - AluSg/x SINE Alu 0 312 127 2304 262 44 66 chr1 213153141 213153234 -29511119 - L1M4c LINE L1 -4167 2217 2124 9181 113 4 1 chr1 213153234 213154517 -29509836 + HSMAR1 DNA Mariner 1 1287 0 2304 262 44 66 chr1 213154517 213155232 -29509121 - L1M4c LINE L1 -4260 2124 1550 191 61 30 0 chr1 213155232 213155265 -29509088 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2304 262 44 66 chr1 213155265 213156024 -29508329 - L1M4c LINE L1 -4834 1550 776 702 332 89 20 chr1 213156044 213156439 -29507914 - L1M4c LINE L1 -5719 594 173 421 331 18 35 chr1 213156470 213156639 -29507714 - MER5B DNA MER1_type 0 178 13 2108 236 77 56 chr1 213156825 213157888 -29506465 + L1ME1 LINE L1 5087 6312 0 9970 188 78 41 chr1 213157905 213160980 -29503373 + L1PA13 LINE L1 1 3200 -3597 1964 24 0 0 chr1 213160975 213161229 -29503124 - L1P LINE L1 -2869 3277 3024 * 7832 18 0 0 chr1 213161229 213162529 -29501824 + L1PA3 LINE L1 4856 6155 0 33 0 0 0 chr1 213162535 213162568 -29501785 + AT_rich Low_complexity Low_complexity 1 33 0 10628 176 28 26 chr1 213162752 213164939 -29499414 + L1PA13 LINE L1 3178 5367 -1430 2040 123 0 3 chr1 213164939 213165231 -29499122 + L1PA13 LINE L1 6500 6806 -8 261 0 0 0 chr1 213165237 213165266 -29499087 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 613 212 173 11 chr1 213165463 213165642 -29498711 - L2 LINE L2 0 3313 3106 330 294 78 54 chr1 213165859 213166063 -29498290 - MIR SINE MIR -5 257 49 229 298 0 0 chr1 213166469 213166526 -29497827 + Charlie8 DNA MER1_type 2360 2416 -1 325 246 82 45 chr1 213166605 213166739 -29497614 - L2 LINE L2 0 3313 3175 828 199 23 28 chr1 213168243 213168419 -29495934 + MER5B DNA MER1_type 4 178 0 293 333 14 85 chr1 213168455 213168596 -29495757 + L2 LINE L2 3126 3256 -16 293 363 0 18 chr1 213168949 213169062 -29495291 - MER5A DNA MER1_type 0 189 79 30 27 0 0 chr1 213169155 213169192 -29495161 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr1 213169278 213169303 -29495050 + AT_rich Low_complexity Low_complexity 1 25 0 499 245 65 11 chr1 213169503 213169687 -29494666 - LTR67 LTR ERVL -10 547 354 1939 146 13 0 chr1 213171651 213171952 -29492401 - AluSx SINE Alu -7 305 1 323 356 206 16 chr1 213173475 213173843 -29490510 + L2 LINE L2 2835 3272 0 520 257 0 7 chr1 213174197 213174349 -29490004 + L1MC4a LINE L1 3788 3938 -2208 537 206 0 0 chr1 213174557 213174649 -29489704 - Tigger7 DNA MER2_type 0 2587 2496 2330 198 76 16 chr1 213174677 213175163 -29489190 - Tigger7 DNA MER2_type -218 515 1 22 0 0 0 chr1 213175249 213175271 -29489082 + AT_rich Low_complexity Low_complexity 1 22 0 1551 211 0 17 chr1 213175348 213175647 -29488706 + AluJo SINE Alu 1 294 -18 885 205 46 5 chr1 213175749 213175944 -29488409 + MER3 DNA MER1_type 1 203 -6 246 333 0 0 chr1 213176260 213176350 -29488003 + L1MC4 LINE L1 6614 6703 -1339 * 263 224 105 0 chr1 213176278 213176354 -29487999 - L1MC4 LINE L1 -1347 6695 6612 503 275 17 50 chr1 213176368 213176666 -29487687 + L1MC4a LINE L1 4881 5168 -978 1793 253 104 20 chr1 213176767 213177373 -29486980 + L1MC4a LINE L1 5254 5910 -1898 505 243 79 19 chr1 213177365 213177579 -29486774 + L1MC4 LINE L1 7753 7979 -63 * 1918 140 10 0 chr1 213177677 213177970 -29486383 - AluSx SINE Alu -16 296 1 192 412 59 13 chr1 213178112 213178350 -29486003 - L2 LINE L2 -220 3052 2804 23 0 0 0 chr1 213178655 213178678 -29485675 + AT_rich Low_complexity Low_complexity 1 23 0 731 273 113 44 chr1 213179412 213179652 -29484701 - L2 LINE L2 -3 3310 3029 3281 174 46 36 chr1 213179652 213180372 -29483981 - LTR8A LTR ERV1 0 727 1 731 273 113 44 chr1 213180372 213180538 -29483815 - L2 LINE L2 -284 3029 2876 1272 174 197 30 chr1 213180538 213180842 -29483511 - LTR47A LTR ERVL -97 355 1 3202 198 48 31 chr1 213180842 213181215 -29483138 + L1MB3 LINE L1 1384 1749 -4670 2020 111 45 7 chr1 213181215 213181504 -29482849 + AluSc SINE Alu 4 303 -6 3202 198 48 31 chr1 213181504 213185339 -29479014 + L1MB3 LINE L1 1749 5784 -635 2409 194 65 12 chr1 213185339 213185828 -29478525 + MLT2B2 LTR ERVL 1 515 0 3202 198 48 31 chr1 213185828 213186476 -29477877 + L1MB3 LINE L1 5784 6419 0 220 294 0 0 chr1 213186644 213186712 -29477641 + A-rich Low_complexity Low_complexity 1 68 0 267 316 0 6 chr1 213187960 213188112 -29476241 - MIR SINE MIR -21 241 10 201 314 98 29 chr1 213188661 213188763 -29475590 - L2 LINE L2 0 3272 3164 237 218 90 26 chr1 213189108 213189186 -29475167 + MIR SINE MIR 131 213 -49 467 339 51 5 chr1 213191097 213191292 -29473061 - MIR SINE MIR -55 207 4 1554 163 28 53 chr1 213192068 213192388 -29471965 + AluJb SINE Alu 1 312 0 1858 197 8 22 chr1 213193305 213193670 -29470683 - MLT1A1 LTR MaLR 0 365 6 2291 178 47 23 chr1 213193675 213194148 -29470205 - MLT-int LTR MaLR 0 1729 1140 23 54 0 0 chr1 213194897 213194934 -29469419 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr1 213196304 213196328 -29468025 + AT_rich Low_complexity Low_complexity 1 24 0 391 254 40 57 chr1 213197154 213197331 -29467022 + Charlie7 DNA MER1_type 2423 2596 -16 223 369 85 15 chr1 213197368 213197498 -29466855 + MIR3 SINE MIR 37 175 -33 2033 142 0 0 chr1 213197557 213197866 -29466487 - AluSx SINE Alu 0 312 1 258 360 37 52 chr1 213198491 213198627 -29465726 + L2 LINE L2 3139 3272 0 376 266 188 13 chr1 213198669 213198823 -29465530 + MER5A DNA MER1_type 7 187 -2 648 284 58 43 chr1 213199049 213199306 -29465047 - MIR SINE MIR 0 262 2 227 273 0 0 chr1 213199738 213199782 -29464571 - L2 LINE L2 -14 3258 3215 285 342 69 10 chr1 213200691 213200820 -29463533 + MIR3 SINE MIR 34 169 -39 708 239 7 7 chr1 213200943 213201098 -29463255 - MIR SINE MIR 0 262 108 204 156 22 22 chr1 213201791 213201807 -29462546 + (CTA)n Simple_repeat Simple_repeat 2 17 -29 1482 190 48 78 chr1 213201807 213202281 -29462072 + MLT1C LTR MaLR 5 464 -3 204 156 22 22 chr1 213202281 213202309 -29462044 + (CTA)n Simple_repeat Simple_repeat 16 46 0 21 71 0 0 chr1 213202628 213202670 -29461683 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 213202838 213202859 -29461494 + AT_rich Low_complexity Low_complexity 1 21 0 241 311 39 61 chr1 213203357 213203537 -29460816 + L2 LINE L2 2348 2523 -791 571 334 140 28 chr1 213204523 213205209 -29459144 + L2 LINE L2 1754 2516 -798 1904 145 36 7 chr1 213205263 213205566 -29458787 + AluSx SINE Alu 1 312 0 242 148 19 0 chr1 213207833 213207887 -29456466 + (CTCA)n Simple_repeat Simple_repeat 1 55 0 24 32 0 0 chr1 213208552 213208583 -29455770 + AT_rich Low_complexity Low_complexity 1 31 0 2040 98 3 18 chr1 213208981 213209266 -29455087 - AluSq SINE Alu -32 281 1 453 19 0 0 chr1 213211844 213211898 -29452455 + (CA)n Simple_repeat Simple_repeat 2 55 0 434 232 32 32 chr1 213212726 213212911 -29451442 + Charlie7 DNA MER1_type 2426 2610 -2 279 0 0 0 chr1 213213203 213213234 -29451119 + (TG)n Simple_repeat Simple_repeat 2 32 0 199 276 115 46 chr1 213213770 213213857 -29450496 - L2 LINE L2 -33 3280 3188 3117 155 9 0 chr1 213214155 213214679 -29449674 - L1MB2 LINE L1 -1 6170 5642 333 0 0 0 chr1 213216514 213216551 -29447802 + (TG)n Simple_repeat Simple_repeat 2 38 0 1870 136 14 10 chr1 213216726 213217021 -29447332 - AluSx SINE Alu -14 298 3 402 289 96 7 chr1 213217923 213218058 -29446295 + MIR SINE MIR 12 158 -104 3503 173 46 18 chr1 213218845 213219579 -29444774 - L1MB4 LINE L1 -6 6174 5420 211 286 0 14 chr1 213219945 213220015 -29444338 + (CG)n Simple_repeat Simple_repeat 2 70 0 218 274 0 0 chr1 213220661 213220712 -29443641 + CT-rich Low_complexity Low_complexity 1 51 0 327 221 142 79 chr1 213220845 213220972 -29443381 + L2 LINE L2 3136 3270 -2 332 246 77 69 chr1 213221268 213221398 -29442955 - MIR SINE MIR -111 151 21 429 287 163 70 chr1 213222605 213222992 -29441361 + L2 LINE L2 1883 2305 -1009 888 273 210 19 chr1 213223002 213223430 -29440923 - L2 LINE L2 0 3313 2804 470 246 114 29 chr1 213223432 213223607 -29440746 - MER58C DNA MER1_type 0 215 26 1064 249 58 14 chr1 213223972 213224382 -29439971 - L1MB2 LINE L1 -590 5584 5159 1302 245 45 60 chr1 213224401 213224894 -29439459 - L1ME2 LINE L1 -27 6137 5652 2635 266 100 6 chr1 213225042 213226412 -29437941 - L1ME2 LINE L1 -1497 4649 3099 629 262 226 12 chr1 213226517 213226769 -29437584 - MLT1G3 LTR MaLR 0 530 225 195 139 0 0 chr1 213227578 213227614 -29436739 + (CATA)n Simple_repeat Simple_repeat 2 37 0 4398 170 53 21 chr1 213227636 213228768 -29435585 + L1MB2 LINE L1 4948 6126 -45 1708 165 0 14 chr1 213228768 213229065 -29435288 + AluJo SINE Alu 1 293 -19 4398 170 53 21 chr1 213229065 213229112 -29435241 + L1MB2 LINE L1 6126 6170 -1 220 326 87 58 chr1 213229334 213229506 -29434847 + MIR SINE MIR 73 249 -13 21 82 0 0 chr1 213229814 213229863 -29434490 + AT_rich Low_complexity Low_complexity 1 49 0 1532 64 25 0 chr1 213232044 213232246 -29432107 - L1PA10 LINE L1 -15 6153 5947 504 307 42 95 chr1 213232949 213233232 -29431121 + L2 LINE L2 3004 3271 -1 272 345 88 0 chr1 213233273 213233386 -29430967 + MIR3 SINE MIR 47 169 -39 1241 70 16 32 chr1 213233405 213233590 -29430763 - AluYb8 SINE Alu -9 309 128 327 207 16 69 chr1 213233741 213233929 -29430424 + (GGGTG)n Simple_repeat Simple_repeat 1 178 0 1045 313 65 27 chr1 213234121 213234647 -29429706 - L2 LINE L2 -4 3309 2763 660 292 0 6 chr1 213236103 213236271 -29428082 - MER105 DNA DNA -2 202 36 312 275 99 0 chr1 213236373 213236515 -29427838 + L1ME4a LINE L1 4899 5054 -1092 23 0 0 0 chr1 213236576 213236599 -29427754 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 213236633 213236653 -29427700 + (A)n Simple_repeat Simple_repeat 1 20 0 715 199 84 67 chr1 213236821 213237075 -29427278 + L1ME2 LINE L1 5914 6331 -3 369 325 85 24 chr1 213237138 213237506 -29426847 + L1ME4a LINE L1 5509 5894 -227 21 57 0 0 chr1 213237741 213237776 -29426577 + AT_rich Low_complexity Low_complexity 1 35 0 287 274 147 10 chr1 213239404 213239506 -29424847 - MIR3 SINE MIR -4 204 89 203 350 195 4 chr1 213239915 213240192 -29424161 + L2 LINE L2 2024 2353 -961 231 313 12 25 chr1 213240202 213240282 -29424071 + MIR SINE MIR 66 144 -118 222 195 0 0 chr1 213240792 213240833 -29423520 + (CA)n Simple_repeat Simple_repeat 1 41 0 293 356 123 31 chr1 213240854 213241180 -29423173 + L2 LINE L2 2895 3250 -22 338 324 57 23 chr1 213241361 213241537 -29422816 - MER117 DNA MER1_type -6 191 10 229 243 204 19 chr1 213242081 213242184 -29422169 - L2 LINE L2 -4 3309 3188 1189 325 46 23 chr1 213242788 213243352 -29421001 - MLT1L LTR MaLR -2 613 37 2255 92 3 0 chr1 213243643 213243937 -29420416 - AluSp SINE Alu -18 295 1 299 175 0 32 chr1 213243938 213244001 -29420352 - MIR SINE MIR -49 213 153 324 239 22 33 chr1 213244101 213244281 -29420072 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 232 305 287 18 chr1 213244571 213244853 -29419500 + L2 LINE L2 2618 2975 -339 207 311 42 50 chr1 213244897 213245016 -29419337 - L2 LINE L2 -7 3306 3189 299 373 0 52 chr1 213245144 213245278 -29419075 + L2 LINE L2 3137 3263 -9 27 49 0 0 chr1 213245654 213245695 -29418658 + AT_rich Low_complexity Low_complexity 1 41 0 1715 180 40 0 chr1 213246823 213247123 -29417230 - AluSx SINE Alu 0 312 1 1002 180 84 0 chr1 213247845 213248084 -29416269 - MER3 DNA MER1_type 0 2615 2357 403 233 17 17 chr1 213248084 213248204 -29416149 - MER3 DNA MER1_type -51 158 39 23 0 0 0 chr1 213248333 213248356 -29415997 + AT_rich Low_complexity Low_complexity 1 23 0 578 269 182 28 chr1 213248521 213248774 -29415579 - MLT1G1 LTR MaLR -290 305 14 2028 220 78 70 chr1 213248836 213249702 -29414651 - L1MDa LINE L1 -3250 3290 2395 547 261 37 6 chr1 213249795 213249956 -29414397 - L1MDa LINE L1 -4287 2253 2088 258 226 17 52 chr1 213250980 213251095 -29413258 + C-rich Low_complexity Low_complexity 4 114 0 208 317 49 12 chr1 213252997 213253079 -29411274 + MIR SINE MIR 49 133 -75 302 275 58 72 chr1 213253266 213253404 -29410949 - L2 LINE L2 -2 3311 3176 279 330 68 0 chr1 213253471 213253559 -29410794 + L2 LINE L2 3160 3253 -19 228 276 102 20 chr1 213253904 213254002 -29410351 + MIR SINE MIR 49 154 -108 5287 105 31 20 chr1 213254565 213255381 -29408972 - L1PA10 LINE L1 -4 6164 5340 8384 135 20 7 chr1 213255381 213256753 -29407600 + L1P LINE L1 3999 5389 -757 1261 78 0 24 chr1 213258317 213258484 -29405869 - AluSg/x SINE Alu -16 296 134 1743 75 4 0 chr1 213258484 213258711 -29405642 - AluY SINE Alu -7 304 77 435 219 49 41 chr1 213259623 213259746 -29404607 - MER21B LTR ERV1 -373 490 367 294 257 0 14 chr1 213259865 213259939 -29404414 - L1ME LINE L1 -510 5611 5539 29 60 0 0 chr1 213260414 213260464 -29403889 + AT_rich Low_complexity Low_complexity 1 50 0 360 282 229 5 chr1 213260950 213261138 -29403215 + MIR SINE MIR 5 234 -28 1532 177 10 37 chr1 213261561 213261860 -29402493 - AluJo SINE Alu -21 291 1 23 33 0 0 chr1 213263020 213263050 -29401303 + AT_rich Low_complexity Low_complexity 1 30 0 190 313 30 15 chr1 213263116 213263183 -29401170 - MIR SINE MIR -155 107 40 210 296 137 59 chr1 213263481 213263662 -29400691 - MIR SINE MIR -21 241 43 2421 25 3 0 chr1 213263983 213264267 -29400086 + AluYb8 SINE Alu 33 317 -1 24 0 0 0 chr1 213264288 213264312 -29400041 + AT_rich Low_complexity Low_complexity 1 24 0 383 214 184 0 chr1 213265416 213265519 -29398834 - MER3 DNA MER1_type -13 196 75 465 258 75 8 chr1 213265959 213266079 -29398274 - L2 LINE L2 -1 3312 3185 249 352 102 0 chr1 213266694 213266822 -29397531 - MIR3 SINE MIR -26 182 42 237 329 0 14 chr1 213266903 213266976 -29397377 - L2 LINE L2 -8 3264 3193 23 54 0 0 chr1 213267810 213267847 -29396506 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 213269052 213269087 -29395266 + AT_rich Low_complexity Low_complexity 1 35 0 186 228 70 35 chr1 213270537 213270594 -29393759 - MIR SINE MIR -46 216 158 188 242 198 33 chr1 213270629 213270720 -29393633 - MIR3 SINE MIR -93 115 10 * 330 179 202 45 chr1 213270718 213270850 -29393503 + MIR SINE MIR 97 252 -10 1716 239 86 0 chr1 213271041 213271518 -29392835 - L1ME1 LINE L1 -244 5991 5474 4879 229 52 10 chr1 213271548 213272904 -29391449 - L1ME1 LINE L1 -1222 4993 3582 1137 295 72 23 chr1 213272935 213273071 -29391282 - L1ME1 LINE L1 -4384 2012 1884 1968 154 3 10 chr1 213273071 213273383 -29390970 - AluSx SINE Alu -2 310 1 1137 295 72 23 chr1 213273383 213273859 -29390494 - L1ME1 LINE L1 -4512 1884 1370 1534 252 26 22 chr1 213273860 213274317 -29390036 - L1ME1 LINE L1 -5895 501 43 413 240 116 0 chr1 213274319 213274448 -29389905 - L1MEc LINE L1 -4536 1860 1717 2235 261 138 23 chr1 213274483 213275410 -29388943 - L1MEc LINE L1 -5328 1068 35 261 0 0 0 chr1 213275773 213275802 -29388551 + (TG)n Simple_repeat Simple_repeat 1 29 0 1293 117 84 5 chr1 213276795 213277008 -29387345 - MER30 DNA MER1_type 0 230 1 723 246 25 4 chr1 213277165 213277407 -29386946 - HERVL68 LTR ERVL -66 2971 2788 622 309 45 47 chr1 213277291 213277715 -29386638 - MER89-int LTR ERV1 -298 6503 6081 * 189 121 0 0 chr1 213278102 213278135 -29386218 + (TG)n Simple_repeat Simple_repeat 2 34 0 774 259 30 0 chr1 213278540 213278741 -29385612 - HERVL68 LTR ERVL -4753 777 571 979 198 110 105 chr1 213278995 213279358 -29384995 - MLT1A1 LTR MaLR 0 365 1 979 284 59 20 chr1 213279358 213279699 -29384654 - HERVL68 LTR ERVL -5131 399 46 273 311 78 0 chr1 213280173 213280276 -29384077 - HERVL68 LTR ERVL -699 2338 2228 3273 263 43 55 chr1 213280307 213281388 -29382965 - HERVL68 LTR ERVL -937 4593 3527 2396 251 51 29 chr1 213281377 213282038 -29382315 - HERVL68 LTR ERVL -2333 3197 2522 * 414 232 32 32 chr1 213282417 213282602 -29381751 - Charlie7 DNA MER1_type -2 2610 2426 453 19 0 0 chr1 213283430 213283484 -29380869 + (TG)n Simple_repeat Simple_repeat 2 55 0 207 264 42 56 chr1 213284650 213284722 -29379631 - MIR SINE MIR -184 78 8 312 292 0 0 chr1 213284747 213284819 -29379534 + L2 LINE L2 3201 3272 0 341 182 0 0 chr1 213286282 213286337 -29378016 + MLT1J2 LTR MaLR 121 175 -275 728 167 8 8 chr1 213286343 213286463 -29377890 + FRAM SINE Alu 2 121 -55 248 111 19 0 chr1 213286471 213286525 -29377828 + (TA)n Simple_repeat Simple_repeat 2 56 0 333 0 0 0 chr1 213286526 213286563 -29377790 + (TC)n Simple_repeat Simple_repeat 2 38 0 243 0 0 0 chr1 213286562 213286589 -29377764 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 41 36 0 0 chr1 213288129 213288184 -29376169 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr1 213289042 213289064 -29375289 + AT_rich Low_complexity Low_complexity 1 22 0 2265 88 7 3 chr1 213289067 213289362 -29374991 + AluSq SINE Alu 3 298 -15 1610 162 0 4 chr1 213290093 213290340 -29374013 + AluSx SINE Alu 3 248 -64 512 167 42 24 chr1 213290375 213290543 -29373810 + CT-rich Low_complexity Low_complexity 2 172 0 187 169 0 51 chr1 213290565 213290624 -29373729 + CT-rich Low_complexity Low_complexity 2 57 0 228 213 33 0 chr1 213290638 213290699 -29373654 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 214 281 0 0 chr1 213290776 213290840 -29373513 + C-rich Low_complexity Low_complexity 1 64 0 549 0 0 0 chr1 213290967 213291028 -29373325 + (TTCC)n Simple_repeat Simple_repeat 2 62 0 1917 154 3 3 chr1 213292386 213292679 -29371674 - AluJb SINE Alu -19 293 1 279 284 128 9 chr1 213292774 213292883 -29371470 + MIR SINE MIR 84 205 -57 1219 283 90 38 chr1 213295068 213296214 -29368139 - L1ME3 LINE L1 -223 6016 4802 737 60 0 0 chr1 213296249 213296349 -29368004 - L1PA14 LINE L1 0 7599 7500 17536 182 25 23 chr1 213296356 213300935 -29363418 - L1PA14 LINE L1 -262 7337 2782 3852 268 85 51 chr1 213300938 213303262 -29361091 - L1ME3 LINE L1 -1446 4769 2367 4128 152 34 39 chr1 213303262 213304339 -29360014 - MER11A LTR ERVK 0 1266 1 379 261 41 21 chr1 213304340 213304589 -29359764 - L1ME3 LINE L1 -3845 2370 2162 5506 135 32 1 chr1 213304599 213305270 -29359083 + L1PB1 LINE L1 5100 5811 -340 318 50 0 0 chr1 213305270 213305310 -29359043 + (TA)n Simple_repeat Simple_repeat 1 40 0 5506 135 32 1 chr1 213305310 213305662 -29358691 + L1PB1 LINE L1 5811 6151 0 338 279 109 39 chr1 213306021 213306304 -29358049 + L1M4 LINE L1 2110 2412 -3734 47 33 0 0 chr1 213306481 213306542 -29357811 + AT_rich Low_complexity Low_complexity 1 61 0 269 161 32 0 chr1 213306547 213306609 -29357744 + (CATA)n Simple_repeat Simple_repeat 1 64 0 364 343 34 17 chr1 213306819 213307052 -29357301 + L1M4 LINE L1 2852 3088 -3058 15771 138 43 1 chr1 213307393 213309932 -29354421 - L1PBa LINE L1 -4215 2648 2 21 0 0 0 chr1 213309958 213309979 -29354374 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 213310813 213310843 -29353510 + AT_rich Low_complexity Low_complexity 1 30 0 7234 135 16 4 chr1 213311493 213312707 -29351646 - Tigger3b DNA MER2_type -1 1230 2 501 190 21 106 chr1 213313535 213313677 -29350676 - MIR SINE MIR -113 149 20 335 329 77 7 chr1 213313695 213313838 -29350515 + MER5A DNA MER1_type 36 188 -1 1190 285 49 51 chr1 213313902 213314499 -29349854 - L2 LINE L2 -4 3309 2712 21 57 0 0 chr1 213315484 213315519 -29348834 + AT_rich Low_complexity Low_complexity 1 35 0 1483 153 41 58 chr1 213315875 213316170 -29348183 + AluSx SINE Alu 3 292 -20 609 243 201 15 chr1 213316228 213316496 -29347857 + L1M4b LINE L1 1321 1638 -5221 2113 116 10 3 chr1 213317141 213317444 -29346909 - AluSq SINE Alu -8 305 1 2014 143 0 0 chr1 213317767 213318068 -29346285 - AluSg SINE Alu -9 301 1 915 187 31 67 chr1 213319219 213319444 -29344909 + MER20 DNA MER1_type 1 217 -2 261 0 0 0 chr1 213319515 213319544 -29344809 + (TTG)n Simple_repeat Simple_repeat 2 30 0 819 271 38 8 chr1 213319620 213319856 -29344497 + MIR SINE MIR 3 245 -17 198 103 0 0 chr1 213319872 213319901 -29344452 + (TC)n Simple_repeat Simple_repeat 2 30 0 412 223 47 65 chr1 213320010 213320182 -29344171 + MIR SINE MIR 37 206 -50 341 262 29 0 chr1 213322320 213322423 -29341930 + MLT1H LTR MaLR 132 237 -312 236 197 0 16 chr1 213322990 213323051 -29341302 + (TCTCTG)n Simple_repeat Simple_repeat 1 60 0 2249 163 31 22 chr1 213323105 213323558 -29340795 - L1MB5 LINE L1 -12 6162 5706 673 210 98 28 chr1 213324171 213324379 -29339974 + MIR SINE MIR 7 232 -30 916 107 29 0 chr1 213324468 213324608 -29339745 - L1MA3 LINE L1 0 6305 6162 1866 126 97 26 chr1 213324713 213325063 -29339290 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr1 213325391 213325418 -29338935 + AT_rich Low_complexity Low_complexity 1 27 0 392 279 40 40 chr1 213325418 213325640 -29338713 - HAL1 LINE L1 0 2507 2286 305 309 96 0 chr1 213325803 213325897 -29338456 + MIR SINE MIR 16 118 -144 22 0 0 0 chr1 213326218 213326240 -29338113 + AT_rich Low_complexity Low_complexity 1 22 0 1389 266 62 46 chr1 213326244 213327110 -29337243 - HAL1 LINE L1 -882 1625 746 358 304 232 36 chr1 213327399 213327705 -29336648 - HAL1 LINE L1 -2075 432 67 1900 156 7 3 chr1 213327936 213328231 -29336122 - AluSx SINE Alu -16 296 1 4706 140 10 92 chr1 213329338 213329682 -29334671 + L1MC1 LINE L1 5330 5700 -633 1962 146 143 8 chr1 213329682 213330059 -29334294 + MSTA LTR MaLR 1 428 0 4706 140 10 92 chr1 213330059 213330794 -29333559 + L1MC1 LINE L1 5700 6316 -17 263 324 103 44 chr1 213331727 213331863 -29332490 - MIR3 SINE MIR -62 146 3 2864 148 56 10 chr1 213332244 213332763 -29331590 + MER41C LTR ERV1 1 543 -11 580 356 48 8 chr1 213332871 213333121 -29331232 + MIR SINE MIR 2 261 -1 775 249 39 5 chr1 213334215 213334420 -29329933 - LTR16A LTR ERVL -5 445 234 252 232 47 54 chr1 213334459 213334613 -29329740 - LTR16A LTR ERVL -299 151 1 196 262 164 0 chr1 213334620 213334681 -29329672 + MIR SINE MIR 49 119 -143 182 204 23 0 chr1 213335530 213335574 -29328779 + L2 LINE L2 3269 3313 0 21 57 0 0 chr1 213336157 213336192 -29328161 + AT_rich Low_complexity Low_complexity 1 35 0 330 331 181 6 chr1 213337500 213337660 -29326693 - MIR SINE MIR -37 225 38 1729 176 0 0 chr1 213337667 213337961 -29326392 + AluJb SINE Alu 11 304 0 435 282 14 35 chr1 213339160 213339302 -29325051 - MIR SINE MIR -113 149 11 1602 176 3 17 chr1 213339623 213339912 -29324441 - AluJo SINE Alu -27 285 1 2465 66 0 3 chr1 213340160 213340464 -29323889 - AluY SINE Alu -8 303 1 811 169 0 0 chr1 213340577 213340701 -29323652 + FLAM_A SINE Alu 8 131 -11 205 265 0 0 chr1 213341582 213341631 -29322722 + GA-rich Low_complexity Low_complexity 3 51 0 228 350 37 25 chr1 213342177 213342340 -29322013 + MIR SINE MIR 92 256 -6 241 336 112 9 chr1 213342620 213342736 -29321617 + L2 LINE L2 3137 3264 -8 511 272 52 47 chr1 213342840 213343072 -29321281 - L2 LINE L2 -9 3304 3072 395 297 22 0 chr1 213343988 213344126 -29320227 + MARNA DNA Mariner 427 567 -19 227 289 0 0 chr1 213345315 213345367 -29318986 - L2 LINE L2 -12 3301 3250 393 284 66 56 chr1 213345797 213345930 -29318423 - MARNA DNA Mariner -148 438 308 1443 215 129 17 chr1 213345930 213346339 -29318014 + MLT2B1 LTR ERVL 3 472 -48 1097 98 12 0 chr1 213346339 213346512 -29317841 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 1443 215 129 17 chr1 213346512 213346568 -29317785 + MLT2B1 LTR ERVL 472 520 0 393 284 66 56 chr1 213346568 213346639 -29317714 - MARNA DNA Mariner -278 308 239 375 78 0 0 chr1 213346639 213346690 -29317663 + (TA)n Simple_repeat Simple_repeat 2 52 0 393 284 66 56 chr1 213346690 213346786 -29317567 - MARNA DNA Mariner -347 239 134 256 271 35 0 chr1 213346786 213346871 -29317482 + MLT1J1 LTR MaLR 1 88 -358 237 234 71 15 chr1 213347009 213347117 -29317236 + MLT1J1 LTR MaLR 291 409 -41 2201 104 14 9 chr1 213347257 213347603 -29316750 + THE1A LTR MaLR 1 348 -7 10081 95 3 22 chr1 213347603 213349094 -29315259 + THE1A-int LTR MaLR 118 1580 0 2308 113 11 8 chr1 213349094 213349448 -29314905 + THE1A LTR MaLR 1 355 0 198 318 197 30 chr1 213349696 213349828 -29314525 + MIR SINE MIR 35 188 -74 433 335 64 14 chr1 213350401 213350619 -29313734 + MIR SINE MIR 5 233 -29 206 298 0 0 chr1 213351387 213351434 -29312919 - L2 LINE L2 -8 3264 3218 21 36 0 0 chr1 213353094 213353122 -29311231 + AT_rich Low_complexity Low_complexity 1 28 0 2122 109 3 33 chr1 213353161 213353465 -29310888 - AluSx SINE Alu -17 295 1 3750 129 20 2 chr1 213353465 213354052 -29310301 - L1PA15 LINE L1 -9 6156 5559 2213 87 40 0 chr1 213354065 213354363 -29309990 - AluY SINE Alu -1 310 1 408 295 9 9 chr1 213354446 213354558 -29309795 - MER5A DNA MER1_type -77 112 1 192 135 0 0 chr1 213354632 213354669 -29309684 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 213355671 213355694 -29308659 + AT_rich Low_complexity Low_complexity 1 23 0 1817 215 25 7 chr1 213355774 213356215 -29308138 - L1 LINE L1 -2189 3957 3509 2215 207 12 4 chr1 213356227 213356711 -29307642 + L1MB3 LINE L1 5696 6183 0 183 313 176 28 chr1 213356761 213356937 -29307416 + L2 LINE L2 2652 2853 -461 293 200 372 14 chr1 213358662 213358877 -29305476 - LTR33A LTR ERVL -4 519 408 450 266 266 31 chr1 213358892 213359336 -29305017 - LTR50 LTR ERVL -239 556 9 536 287 82 21 chr1 213359704 213359986 -29304367 - ERVL LTR ERVL -365 5399 5101 7286 48 0 0 chr1 213360079 213361271 -29303082 - L1PA5 LINE L1 -6 6148 4957 186 118 0 0 chr1 213364339 213364373 -29299980 + (TG)n Simple_repeat Simple_repeat 2 35 0 1821 101 0 4 chr1 213365609 213365846 -29298507 - AluSq SINE Alu -77 236 1 985 157 6 0 chr1 213366585 213366757 -29297596 + AluSc SINE Alu 135 307 -2 1855 134 94 29 chr1 213367268 213367610 -29296743 + THE1B LTR MaLR 1 364 0 269 267 93 12 chr1 213370942 213371028 -29293325 - MLT1H LTR MaLR -16 579 487 * 451 304 71 74 chr1 213371004 213371369 -29292984 - MLT1H LTR MaLR -185 364 1 380 223 61 74 chr1 213371699 213371847 -29292506 + MLT1G LTR MaLR 156 301 -248 691 206 170 37 chr1 213371966 213372184 -29292169 + MLT1G LTR MaLR 309 590 0 1244 249 60 53 chr1 213372494 213372947 -29291406 - MLT1E2 LTR MaLR -170 456 1 370 320 39 0 chr1 213372959 213373062 -29291291 + MER91C DNA MER1_type 33 139 -1 306 0 0 0 chr1 213374159 213374193 -29290160 + (TG)n Simple_repeat Simple_repeat 2 35 0 205 365 27 0 chr1 213374279 213374353 -29290000 + L2 LINE L2 3197 3272 0 215 340 86 79 chr1 213375348 213375663 -29288690 - L2 LINE L2 -5 3267 2951 451 348 40 28 chr1 213375882 213376129 -29288224 + MIR SINE MIR 13 262 0 1347 218 78 32 chr1 213376498 213376947 -29287406 - MLT1D LTR MaLR 0 505 1 815 269 42 0 chr1 213377300 213377512 -29286841 + MER58A DNA MER1_type 2 222 -2 300 322 11 11 chr1 213377514 213377604 -29286749 + MIR SINE MIR 16 105 -157 401 350 0 8 chr1 213377656 213377779 -29286574 + MLT1K LTR MaLR 44 165 -423 564 270 38 24 chr1 213377920 213378131 -29286222 + MLT1K LTR MaLR 375 588 0 267 225 234 18 chr1 213378132 213378243 -29286110 + MIR SINE MIR 101 235 -27 32 26 0 0 chr1 213378489 213378528 -29285825 + AT_rich Low_complexity Low_complexity 1 39 0 237 369 35 7 chr1 213378844 213378985 -29285368 + MIR SINE MIR 20 143 -65 1635 210 60 29 chr1 213381807 213382255 -29282098 + LTR40b LTR ERVL 1 462 0 214 359 116 31 chr1 213383809 213384481 -29279872 + L2 LINE L2 1834 2562 -752 2389 158 63 19 chr1 213385682 213386158 -29278195 - LOR1a LTR ERV1 0 497 1 235 204 19 19 chr1 213388396 213388450 -29275903 - L2 LINE L2 -4 3309 3256 387 287 162 0 chr1 213388617 213388784 -29275569 - MIR SINE MIR -56 206 13 181 400 131 8 chr1 213388902 213389032 -29275321 - L2 LINE L2 -1 3271 3126 236 191 32 0 chr1 213389215 213389278 -29275075 + (TATG)n Simple_repeat Simple_repeat 4 68 0 522 295 82 38 chr1 213391719 213391880 -29272473 + MIR SINE MIR 3 181 -81 2182 41 48 0 chr1 213391880 213392175 -29272178 + AluY SINE Alu 1 308 0 522 295 82 38 chr1 213392175 213392261 -29272092 + MIR SINE MIR 181 262 0 219 415 90 20 chr1 213392392 213392592 -29271761 + L2 LINE L2 2567 2780 -534 1960 297 68 40 chr1 213392596 213393833 -29270520 + L1MC3 LINE L1 36 1319 -5077 2013 130 3 10 chr1 213393833 213394125 -29270228 - AluSx SINE Alu -20 292 3 1960 297 68 40 chr1 213394125 213394321 -29270032 + L1MC3 LINE L1 1319 1508 -4888 1062 222 87 60 chr1 213394330 213394720 -29269633 + L1MC3 LINE L1 1651 2068 -4328 552 237 237 0 chr1 213394720 213394889 -29269464 + MER3 DNA MER1_type 1 209 0 1062 222 87 60 chr1 213394889 213395150 -29269203 + L1MC3 LINE L1 2068 2320 -4076 304 248 50 0 chr1 213395167 213395268 -29269085 + L1MC3 LINE L1 2399 2504 -3711 * 1162 185 54 10 chr1 213395263 213395560 -29268793 + L1MC3 LINE L1 2713 3022 -3193 2609 224 80 67 chr1 213395596 213395851 -29268502 - Charlie1 DNA MER1_type -9 2752 2502 2178 119 0 3 chr1 213395851 213396154 -29268199 + AluSc SINE Alu 1 302 -7 2609 224 80 67 chr1 213396154 213397009 -29267344 - Charlie1 DNA MER1_type -259 2502 1627 4183 195 86 28 chr1 213397038 213398041 -29266312 + L1MC3 LINE L1 5421 6481 -1373 1994 143 56 8 chr1 213398063 213398421 -29265932 - THE1C LTR MaLR 0 375 1 255 61 0 0 chr1 213398451 213398484 -29265869 + (TG)n Simple_repeat Simple_repeat 1 33 0 257 366 30 15 chr1 213400089 213400220 -29264133 + L2 LINE L2 3180 3312 -1 280 336 161 0 chr1 213401696 213401839 -29262514 - MIR3 SINE MIR -5 203 38 455 307 66 6 chr1 213401903 213402069 -29262284 + MIR SINE MIR 66 241 -21 183 371 36 29 chr1 213402413 213402553 -29261800 - L2 LINE L2 -576 2738 2598 543 306 65 33 chr1 213402857 213402901 -29261452 + L2 LINE L2 2638 2679 -635 817 189 196 0 chr1 213402901 213403171 -29261182 + MER33 DNA MER1_type 2 324 0 543 306 65 33 chr1 213403171 213403371 -29260982 + L2 LINE L2 2679 2890 -424 715 291 87 70 chr1 213403373 213403972 -29260381 + MLT1L LTR MaLR 1 609 -6 284 257 98 55 chr1 213404077 213404260 -29260093 + L2 LINE L2 3030 3220 -93 821 275 59 31 chr1 213406030 213406354 -29257999 - MLT1I LTR MaLR -18 391 59 2906 118 9 33 chr1 213406660 213407119 -29257234 + MER75 DNA T2_type 1 448 -66 526 89 25 13 chr1 213407128 213407207 -29257146 - MER75 DNA T2_type 0 514 435 388 209 54 54 chr1 213407426 213407555 -29256798 + Charlie4 DNA MER1_type 1831 1959 -2 401 280 157 60 chr1 213407793 213408257 -29256096 - MLT1L LTR MaLR -102 513 5 2153 123 0 7 chr1 213408902 213409203 -29255150 - AluSg SINE Alu -11 299 1 227 384 67 65 chr1 213409309 213409650 -29254703 - L2 LINE L2 0 3272 2931 2001 177 38 18 chr1 213411144 213411539 -29252814 + MER57A LTR ERV1 1 403 0 22 35 0 0 chr1 213411893 213411922 -29252431 + AT_rich Low_complexity Low_complexity 1 29 0 383 311 47 9 chr1 213411960 213412066 -29252287 - MIR3 SINE MIR 0 208 99 1827 168 0 13 chr1 213412251 213412554 -29251799 + AluJb SINE Alu 3 301 -11 243 79 0 0 chr1 213413495 213413533 -29250820 + (A)n Simple_repeat Simple_repeat 1 38 0 3220 168 49 5 chr1 213414097 213414693 -29249660 + LTR26E LTR ERV1 1 622 0 2233 75 3 75 chr1 213414816 213415147 -29249206 + AluSp SINE Alu 1 307 -6 4986 188 23 45 chr1 213415245 213415368 -29248985 + L1MB3 LINE L1 4607 4731 -1452 2353 79 0 13 chr1 213415368 213415672 -29248681 - AluY SINE Alu -11 300 1 4986 188 23 45 chr1 213415672 213417159 -29247194 + L1MB3 LINE L1 4731 6181 -2 36 70 0 0 chr1 213417299 213417370 -29246983 + AT_rich Low_complexity Low_complexity 1 71 0 980 188 64 5 chr1 213417500 213417702 -29246651 - MER58A DNA MER1_type -10 214 1 2545 97 42 0 chr1 213417794 213418154 -29246199 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr1 213419298 213419320 -29245033 + AT_rich Low_complexity Low_complexity 1 22 0 349 290 11 0 chr1 213419700 213419793 -29244560 - MIR SINE MIR -69 193 100 1130 283 84 15 chr1 213419793 213420196 -29244157 - LTR16B LTR ERVL 0 464 34 846 217 101 19 chr1 213420377 213420584 -29243769 - MER58A DNA MER1_type 0 224 1 2464 125 8 0 chr1 213420675 213421036 -29243317 + THE1B LTR MaLR 1 364 0 207 0 0 0 chr1 213421363 213421386 -29242967 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 2280 100 0 10 chr1 213421984 213422293 -29242060 - AluY SINE Alu -5 306 1 278 325 296 18 chr1 213426115 213426844 -29237509 + L2 LINE L2 2040 2971 -343 397 242 11 11 chr1 213427749 213427840 -29236513 + L2 LINE L2 3223 3313 0 195 42 0 0 chr1 213427945 213427969 -29236384 + (TC)n Simple_repeat Simple_repeat 1 24 0 1642 201 11 20 chr1 213428934 213429282 -29235071 - MER34C LTR ERV1 -200 385 41 575 100 0 0 chr1 213429371 213429451 -29234902 + MADE1 DNA Mariner 1 80 0 2039 187 153 32 chr1 213429803 213430455 -29233898 + LTR48 LTR ERV1 2 652 -55 315 190 51 13 chr1 213430457 213430536 -29233817 + LTR49-int LTR ERV1 1795 1876 -4455 252 158 13 53 chr1 213430813 213430889 -29233464 + LTR49-int LTR ERV1 1305 1377 -4954 1037 193 63 61 chr1 213431049 213431417 -29232936 + LTR49-int LTR ERV1 1373 2113 -3833 617 192 24 36 chr1 213431433 213431600 -29232753 + LTR49-int LTR ERV1 443 607 -4329 1306 266 12 6 chr1 213431652 213431983 -29232370 + LTR49-int LTR ERV1 1908 2240 -4091 1016 156 46 29 chr1 213432490 213432728 -29231625 + LTR49-int LTR ERV1 3031 3272 -3059 445 145 0 0 chr1 213432788 213432857 -29231496 + LTR49-int LTR ERV1 3272 3340 -2991 549 196 0 0 chr1 213432920 213433017 -29231336 + LTR49-int LTR ERV1 3357 3453 -2878 486 253 26 31 chr1 213433249 213433443 -29230910 + LTR49-int LTR ERV1 1758 1950 -3173 24 77 0 0 chr1 213433578 213433630 -29230723 + AT_rich Low_complexity Low_complexity 1 52 0 438 179 111 58 chr1 213433650 213433857 -29230496 + LTR49-int LTR ERV1 3462 3679 -2652 1362 153 19 8 chr1 213433994 213434256 -29230097 - L1MB3 LINE L1 -55 6128 5864 8430 174 32 23 chr1 213434256 213435453 -29228900 - L1PA13 LINE L1 0 6814 5629 2508 76 0 0 chr1 213435453 213435754 -29228599 + AluY SINE Alu 1 301 -10 8430 174 32 23 chr1 213435754 213437131 -29227222 - L1PA13 LINE L1 -1185 5629 4217 11994 195 28 10 chr1 213437137 213439920 -29224433 - L1PA13 LINE L1 -3947 2850 1 1329 290 45 10 chr1 213439935 213440102 -29224251 + Charlie2b DNA MER1_type 508 668 -2114 249 33 0 0 chr1 213440102 213440132 -29224221 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 2019 138 3 17 chr1 213440132 213440430 -29223923 - AluSx SINE Alu -17 295 2 293 100 20 0 chr1 213440430 213440480 -29223873 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 1329 290 45 10 chr1 213440480 213440803 -29223550 + Charlie2b DNA MER1_type 667 1017 -1765 290 202 101 10 chr1 213440892 213440991 -29223362 + Charlie2b DNA MER1_type 1160 1267 -1515 * 449 250 14 28 chr1 213440982 213441194 -29223159 + Charlie2b DNA MER1_type 2071 2279 -503 321 275 49 0 chr1 213441162 213441304 -29223049 + Charlie2b DNA MER1_type 2617 2765 -17 * 445 327 34 95 chr1 213442810 213443168 -29221185 - L2 LINE L2 -25 3247 2912 337 281 39 59 chr1 213443212 213443365 -29220988 - L2 LINE L2 -556 2758 2609 745 234 7 13 chr1 213443504 213443706 -29220647 - MLT1B LTR MaLR 0 374 174 210 143 0 0 chr1 213443710 213443745 -29220608 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 593 215 16 105 chr1 213443747 213443938 -29220415 - MLT1A2 LTR MaLR -189 185 1 1356 106 0 22 chr1 213444261 213444487 -29219866 + L1MA4 LINE L1 6008 6228 -72 204 250 44 59 chr1 213444669 213444737 -29219616 - L2 LINE L2 0 3272 3206 271 250 31 0 chr1 213446750 213446814 -29217539 - MLT1L LTR MaLR -342 273 208 255 235 0 74 chr1 213446925 213447006 -29217347 - MLT1L LTR MaLR -540 75 1 1805 187 16 11 chr1 213447348 213447711 -29216642 - MLT1A1 LTR MaLR 0 365 1 223 353 62 49 chr1 213448238 213448462 -29215891 - L2 LINE L2 -164 3108 2882 1856 151 4 0 chr1 213448798 213449076 -29215277 + AluJb SINE Alu 1 279 -33 216 0 0 0 chr1 213449076 213449100 -29215253 + (CA)n Simple_repeat Simple_repeat 1 24 0 269 251 171 16 chr1 213449193 213449457 -29214896 - MLT1J2 LTR MaLR 0 446 130 2906 126 144 140 chr1 213450100 213451544 -29212809 + pTR5 LTR ERV1 742 2606 0 1401 199 76 7 chr1 213451667 213451958 -29212395 - AluJo SINE Alu -1 311 1 242 324 14 55 chr1 213452068 213452213 -29212140 + MIR SINE MIR 124 262 0 188 258 289 10 chr1 213453379 213453476 -29210877 - L2 LINE L2 0 3272 3149 276 236 0 0 chr1 213454000 213454055 -29210298 + L2 LINE L2 3216 3270 -2 296 311 189 0 chr1 213454060 213454166 -29210187 + MIR SINE MIR 45 170 -92 199 352 0 0 chr1 213454423 213454494 -29209859 - L2 LINE L2 -5 3308 3238 500 283 113 4 chr1 213454543 213455002 -29209351 + HAL1 LINE L1 1306 1917 -590 423 155 0 0 chr1 213455239 213455310 -29209043 - MER66A LTR ERV1 -239 239 169 818 235 36 29 chr1 213455310 213455587 -29208766 - MLT1C LTR MaLR -35 432 154 1965 117 96 18 chr1 213455634 213456019 -29208334 - L1MC3 LINE L1 0 7785 7371 1131 191 69 101 chr1 213456020 213456465 -29207888 - MER66A LTR ERV1 0 478 97 1264 234 28 3 chr1 213456544 213456865 -29207488 - L1MC3 LINE L1 -406 7379 7051 4492 144 7 18 chr1 213458100 213458873 -29205480 - L1MC1 LINE L1 0 6333 5570 459 0 0 0 chr1 213459175 213459226 -29205127 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr1 213459225 213459252 -29205101 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 824 279 42 0 chr1 213461772 213461987 -29202366 - MER58A DNA MER1_type 0 224 1 246 264 123 19 chr1 213463333 213463439 -29200914 - MIR SINE MIR -80 182 66 282 244 24 24 chr1 213463575 213463702 -29200651 + (TTATA)n Simple_repeat Simple_repeat 3 129 0 232 252 10 68 chr1 213464463 213464566 -29199787 + MIR SINE MIR 89 185 -77 * 662 254 125 17 chr1 213464530 213464623 -29199730 - MIR SINE MIR -4 258 176 1678 173 89 3 chr1 213464623 213464959 -29199394 - MLT1A1 LTR MaLR 0 365 1 662 254 125 17 chr1 213464959 213465097 -29199256 - MIR SINE MIR -86 176 2 457 262 8 24 chr1 213465204 213465330 -29199023 + MIR SINE MIR 118 241 -21 344 245 130 87 chr1 213466144 213466240 -29198113 - MIR SINE MIR 0 262 172 2129 127 0 0 chr1 213466240 213466532 -29197821 - AluSx SINE Alu -15 297 6 344 245 130 87 chr1 213466532 213466664 -29197689 - MIR SINE MIR -90 172 30 190 425 38 0 chr1 213468186 213468266 -29196087 - L2 LINE L2 -86 3186 3104 206 192 19 0 chr1 213468573 213468625 -29195728 + (TG)n Simple_repeat Simple_repeat 2 54 0 1801 177 3 0 chr1 213469018 213469329 -29195024 + AluJo SINE Alu 1 312 0 248 283 50 58 chr1 213469403 213469523 -29194830 - L2 LINE L2 0 3272 3154 234 323 94 10 chr1 213469534 213469630 -29194723 - MIR3 SINE MIR -6 202 99 1708 191 23 3 chr1 213469654 213469953 -29194400 + AluJb SINE Alu 1 305 -7 189 321 30 76 chr1 213470053 213470184 -29194169 + L2 LINE L2 3142 3266 -6 377 239 214 19 chr1 213470306 213470465 -29193888 + L3 LINE CR1 879 1068 -509 838 132 0 23 chr1 213470481 213470610 -29193743 - AluJo SINE Alu -176 136 11 338 362 162 19 chr1 213470711 213470921 -29193432 + L3 LINE CR1 1078 1317 -260 227 208 0 0 chr1 213470921 213470974 -29193379 - FRAM/FAM SINE Alu -86 80 28 298 382 20 13 chr1 213470976 213471128 -29193225 + L3 LINE CR1 1340 1492 -85 508 288 82 27 chr1 213471469 213471653 -29192700 + MIR SINE MIR 50 243 -19 2282 161 110 2 chr1 213472482 213472911 -29191442 - MER70B LTR ERVL -103 475 1 203 381 45 37 chr1 213472939 213473073 -29191280 + L2 LINE L2 3078 3212 -60 399 256 6 67 chr1 213474635 213474799 -29189554 - L2 LINE L2 -1 3312 3159 320 307 131 11 chr1 213474822 213474998 -29189355 - MLT1L LTR MaLR -19 596 400 2194 90 0 17 chr1 213475184 213475474 -29188879 + AluSg SINE Alu 1 285 -25 760 341 48 42 chr1 213475590 213475901 -29188452 - MER115 DNA AcHobo -210 483 166 957 218 51 8 chr1 213475901 213476158 -29188195 + ORSL DNA AcHobo 5 272 -3 760 341 48 42 chr1 213476158 213476324 -29188029 - MER115 DNA AcHobo -527 166 3 424 31 46 0 chr1 213477367 213477432 -29186921 + (TTTTA)n Simple_repeat Simple_repeat 5 72 0 2192 100 0 0 chr1 213477432 213477712 -29186641 - AluSx SINE Alu -32 280 1 858 119 0 0 chr1 213479605 213479739 -29184614 + (TA)n Simple_repeat Simple_repeat 1 134 0 3214 238 82 47 chr1 213479869 213481230 -29183123 + L1MC5 LINE L1 6486 7901 -60 291 255 64 0 chr1 213481716 213481810 -29182543 + MIR SINE MIR 89 188 -74 214 256 0 0 chr1 213481859 213481902 -29182451 + polypyrimidine Low_complexity Low_complexity 1 43 0 2918 158 48 43 chr1 213483238 213483839 -29180514 - MER6A DNA MER2_type 0 605 2 2196 79 4 0 chr1 213485251 213485528 -29178825 - AluSp SINE Alu -1 312 35 228 178 0 22 chr1 213486673 213486718 -29177635 + CT-rich Low_complexity Low_complexity 1 44 0 204 111 0 0 chr1 213486745 213486781 -29177572 + (TC)n Simple_repeat Simple_repeat 1 36 0 404 165 186 10 chr1 213486806 213486903 -29177450 - MIR SINE MIR -25 237 124 1516 257 73 47 chr1 213487248 213488285 -29176068 - L1ME3A LINE L1 -313 5849 4788 241 297 66 0 chr1 213488355 213488446 -29175907 + MIR SINE MIR 87 183 -79 198 103 0 0 chr1 213488533 213488562 -29175791 + (T)n Simple_repeat Simple_repeat 1 29 0 318 245 41 20 chr1 213488567 213488665 -29175688 - MLT1K LTR MaLR -8 580 481 434 291 102 36 chr1 213489801 213490300 -29174053 - HAL1 LINE L1 -617 1890 1324 1353 227 79 34 chr1 213490391 213490770 -29173583 + MSTD LTR MaLR 1 396 0 2483 259 64 33 chr1 213490940 213491722 -29172631 - L1ME3 LINE L1 -199 5963 5207 1923 138 0 7 chr1 213491722 213491998 -29172355 + AluSx SINE Alu 1 274 -38 405 0 0 0 chr1 213492004 213492049 -29172304 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2483 259 64 33 chr1 213492049 213492940 -29171413 - L1ME3 LINE L1 -959 5203 4206 439 297 152 39 chr1 213492941 213493251 -29171102 - HAL1 LINE L1 -1341 1166 822 236 234 16 16 chr1 213493860 213493988 -29170365 + (TA)n Simple_repeat Simple_repeat 1 128 0 1262 269 75 16 chr1 213494200 213494587 -29169766 + LTR40a LTR ERVL 90 499 -20 314 28 0 0 chr1 213494630 213494666 -29169687 + (C)n Simple_repeat Simple_repeat 1 36 0 30 27 0 0 chr1 213497005 213497042 -29167311 + AT_rich Low_complexity Low_complexity 1 37 0 1289 88 22 11 chr1 213497045 213497227 -29167126 - AluSq SINE Alu -18 295 112 257 247 7 0 chr1 213497328 213497478 -29166875 + (GAATG)n Satellite Satellite 1 151 0 705 167 0 0 chr1 213497539 213497713 -29166640 + (GAATG)n Satellite Satellite 1 174 0 692 180 0 14 chr1 213497746 213498108 -29166245 + (GAATG)n Satellite Satellite 1 357 0 477 204 0 0 chr1 213498163 213498335 -29166018 + (GAATG)n Satellite Satellite 4 175 0 709 153 6 6 chr1 213498368 213498545 -29165808 + (GAATG)n Satellite Satellite 4 180 0 710 168 0 25 chr1 213498599 213499047 -29165306 + (GAATG)n Satellite Satellite 1 436 0 308 64 0 0 chr1 213499198 213499245 -29165108 + AluSx SINE Alu 254 300 0 2296 121 0 0 chr1 213499341 213499639 -29164714 - AluSx SINE Alu -14 298 1 2217 104 3 13 chr1 213500311 213500610 -29163743 + AluSq SINE Alu 1 296 -17 299 265 0 12 chr1 213500621 213500704 -29163649 - HERVL40 LTR ERVL -2430 3100 3019 2058 184 91 32 chr1 213500817 213501280 -29163073 + LTR2B LTR ERV1 1 490 0 338 320 46 39 chr1 213501389 213501542 -29162811 - HERVL40 LTR ERVL -2931 2092 1939 627 271 92 42 chr1 213501898 213502182 -29162171 - HERVL40 LTR ERVL -1723 3807 3510 672 229 132 19 chr1 213502182 213502387 -29161966 - HERVL40 LTR ERVL -3193 2337 2110 2152 137 0 6 chr1 213502797 213503111 -29161242 - AluSx SINE Alu 0 312 1 1810 110 117 0 chr1 213503131 213503395 -29160958 - AluSx SINE Alu -17 295 1 1101 199 134 50 chr1 213503396 213503595 -29160758 - REP3 LTR ERV -258 304 74 2206 117 3 3 chr1 213503595 213503893 -29160460 + AluSx SINE Alu 1 298 -14 1101 199 134 50 chr1 213503893 213503970 -29160383 - REP3 LTR ERV -488 74 5 310 247 12 0 chr1 213504031 213504112 -29160241 - Charlie1 DNA MER1_type -2679 82 1 765 187 0 8 chr1 213504277 213504400 -29159953 - FLAM_A SINE Alu -11 122 1 2335 82 10 0 chr1 213504453 213504746 -29159607 + AluY SINE Alu 1 296 -15 359 240 0 48 chr1 213504762 213504866 -29159487 + L1ME3A LINE L1 4894 4992 -1154 * 369 226 53 23 chr1 213504841 213504947 -29159406 + L1ME3A LINE L1 5836 5948 -222 2257 103 3 10 chr1 213504947 213505080 -29159273 + AluSp SINE Alu 3 135 -178 2192 128 0 0 chr1 213505080 213505378 -29158975 + AluY SINE Alu 1 298 -13 2257 103 3 10 chr1 213505378 213505556 -29158797 + AluSp SINE Alu 135 312 -1 369 226 53 23 chr1 213505556 213505582 -29158771 + L1ME3A LINE L1 5948 5972 -198 2119 134 0 3 chr1 213505617 213505922 -29158431 + AluJb SINE Alu 1 304 -8 2229 100 3 3 chr1 213505981 213506272 -29158081 + AluSg SINE Alu 1 291 -19 414 139 0 56 chr1 213506504 213506576 -29157777 + MER63 DNA MER1_type 682 749 -312 2477 65 0 0 chr1 213506614 213506906 -29157447 + AluY SINE Alu 1 292 -19 604 161 136 8 chr1 213507067 213507185 -29157168 + FLAM_C SINE Alu 1 133 0 985 260 83 6 chr1 213507259 213507571 -29156782 - LTR16C LTR ERVL 0 491 156 995 155 0 30 chr1 213507743 213507911 -29156442 - FRAM SINE Alu 0 166 4 2124 102 11 3 chr1 213507932 213508239 -29156114 - AluSp SINE Alu 0 310 2 1875 140 7 0 chr1 213508272 213508544 -29155809 - AluSx SINE Alu -38 274 1 190 297 36 43 chr1 213509402 213509540 -29154813 - MIR3 SINE MIR -27 181 45 619 212 44 0 chr1 213509560 213509697 -29154656 - MER5A DNA MER1_type 0 189 47 184 277 46 0 chr1 213510458 213510523 -29153830 - L2 LINE L2 -213 3059 2992 229 221 44 0 chr1 213511410 213511478 -29152875 + L2 LINE L2 3237 3307 -6 2004 122 16 30 chr1 213511478 213511781 -29152572 + AluSx SINE Alu 1 299 -13 2132 79 69 0 chr1 213513951 213514228 -29150125 + AluY SINE Alu 1 296 -15 230 95 24 0 chr1 213514298 213514340 -29150013 + (TC)n Simple_repeat Simple_repeat 2 44 0 329 323 55 18 chr1 213514854 213515018 -29149335 + MIR SINE MIR 20 189 -73 1430 155 4 4 chr1 213515145 213515377 -29148976 + AluJo SINE Alu 63 294 -18 225 324 37 46 chr1 213515659 213515767 -29148586 + MIR SINE MIR 39 145 -63 730 197 86 35 chr1 213517158 213517244 -29147109 - MER3 DNA MER1_type -1 208 128 2388 92 0 19 chr1 213517244 213517561 -29146792 + AluSx SINE Alu 1 311 -1 730 197 86 35 chr1 213517561 213517672 -29146681 - MER3 DNA MER1_type -81 128 1 207 256 61 24 chr1 213518693 213518775 -29145578 - MIR SINE MIR -129 133 49 192 254 119 15 chr1 213519458 213519525 -29144828 + MER5B DNA MER1_type 5 78 -100 15015 25 0 0 chr1 213520349 213522848 -29141505 + L1PA2 LINE L1 3657 6155 0 25 0 0 0 chr1 213523478 213523503 -29140850 + AT_rich Low_complexity Low_complexity 1 25 0 2315 99 0 6 chr1 213523696 213524009 -29140344 + AluY SINE Alu 1 311 0 200 301 138 8 chr1 213525254 213525377 -29138976 - MIR3 SINE MIR -40 168 30 196 324 0 28 chr1 213526657 213526728 -29137625 + L2 LINE L2 2992 3060 -212 276 149 0 0 chr1 213527531 213527578 -29136775 + (CA)n Simple_repeat Simple_repeat 2 48 0 567 204 10 0 chr1 213529801 213529904 -29134449 + MER81 DNA DNA 1 104 -10 323 321 127 6 chr1 213531071 213531236 -29133117 + MIR SINE MIR 22 206 -56 629 231 97 94 chr1 213532786 213533146 -29131207 - L2 LINE L2 0 3313 2953 298 93 19 0 chr1 213533924 213533978 -29130375 + L1PB3 LINE L1 6097 6151 -3 25 31 0 0 chr1 213534955 213534987 -29129366 + AT_rich Low_complexity Low_complexity 1 32 0 483 18 0 0 chr1 213535180 213535236 -29129117 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 1693 212 56 5 chr1 213535899 213536290 -29128063 - MER63 DNA MER1_type -2 1059 649 1113 153 36 54 chr1 213536290 213536446 -29127907 + MER20B DNA MER1_type 1 153 -66 2146 152 25 0 chr1 213536446 213536801 -29127552 - THE1B LTR MaLR 0 364 1 1113 153 36 54 chr1 213536801 213536867 -29127486 + MER20B DNA MER1_type 153 219 0 360 173 120 0 chr1 213536867 213536942 -29127411 - MER63 DNA MER1_type -405 655 572 1681 61 0 0 chr1 213538654 213538852 -29125501 + AluY SINE Alu 1 198 -113 1675 176 61 3 chr1 213538892 213539221 -29125132 + L1MB5 LINE L1 5794 6141 -33 186 232 72 29 chr1 213539351 213539420 -29124933 + MIR3 SINE MIR 135 206 -2 299 318 40 23 chr1 213539526 213539702 -29124651 + L2 LINE L2 2839 3017 -255 2182 121 3 13 chr1 213540054 213540369 -29123984 + AluSp SINE Alu 1 312 -1 1162 87 0 22 chr1 213540369 213540421 -29123932 + (GAAA)n Simple_repeat Simple_repeat 1 230 0 1162 87 0 22 chr1 213540421 213540605 -29123748 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 320 313 211 0 chr1 213541496 213541662 -29122691 - MIR SINE MIR -14 248 48 225 311 40 40 chr1 213541666 213541740 -29122613 + MIR3 SINE MIR 92 165 -43 193 325 197 17 chr1 213544804 213544921 -29119432 - MIR SINE MIR -107 155 18 2341 58 7 3 chr1 213545164 213545456 -29118897 - AluY SINE Alu -18 293 1 1019 304 80 17 chr1 213546757 213547221 -29117132 + MER20B DNA MER1_type 30 522 -261 244 282 55 72 chr1 213549095 213549276 -29115077 - HAL1b LINE L1 -1013 335 158 1612 266 128 73 chr1 213549915 213551382 -29112971 - L1MEc LINE L1 -4340 2056 457 1266 85 149 5 chr1 213551382 213551583 -29112770 - MER30 DNA MER1_type 0 230 1 1612 266 128 73 chr1 213551583 213552029 -29112324 - L1MEc LINE L1 -5939 457 37 850 244 11 40 chr1 213552587 213552862 -29111491 + MER20B DNA MER1_type 517 783 0 314 370 92 0 chr1 213552862 213552981 -29111372 - L2 LINE L2 -4 3268 3139 202 337 10 20 chr1 213552985 213553083 -29111270 + L2 LINE L2 3216 3312 -1 2288 108 0 0 chr1 213553971 213554278 -29110075 + AluSg SINE Alu 3 309 -1 201 147 0 0 chr1 213555069 213555103 -29109250 + (A)n Simple_repeat Simple_repeat 1 34 0 369 322 194 14 chr1 213555562 213555773 -29108580 - MIR SINE MIR -8 254 6 243 300 39 50 chr1 213555881 213556061 -29108292 - MLT1L LTR MaLR -6 609 432 257 94 0 19 chr1 213556067 213556120 -29108233 + L1MB3 LINE L1 6131 6182 -1 355 264 60 75 chr1 213556453 213556654 -29107699 - MLT1J LTR MaLR -199 312 115 1716 216 16 19 chr1 213556776 213557151 -29107202 - MLT1A2 LTR MaLR 0 374 1 1751 147 65 0 chr1 213558224 213558517 -29105836 - AluSx SINE Alu 0 312 1 358 296 28 0 chr1 213558521 213558629 -29105724 - MIR SINE MIR -58 204 94 24 53 0 0 chr1 213558936 213558974 -29105379 + AT_rich Low_complexity Low_complexity 1 38 0 1003 234 18 0 chr1 213559086 213559304 -29105049 - MER58A DNA MER1_type 0 224 3 392 239 63 13 chr1 213560023 213560182 -29104171 + (TATATG)n Simple_repeat Simple_repeat 4 170 0 1160 167 20 0 chr1 213560182 213560386 -29103967 + MER2 DNA MER2_type 2 209 -136 251 259 0 0 chr1 213560413 213560467 -29103886 + MER2 DNA MER2_type 267 320 -25 206 186 0 23 chr1 213560480 213560523 -29103830 + (TA)n Simple_repeat Simple_repeat 1 42 0 26 0 0 0 chr1 213563238 213563264 -29101089 + AT_rich Low_complexity Low_complexity 1 26 0 257 221 118 0 chr1 213564799 213564867 -29099486 - MLT1K LTR MaLR 0 588 513 204 341 34 11 chr1 213565376 213565464 -29098889 + MIR SINE MIR 58 147 -61 749 233 26 145 chr1 213565480 213565600 -29098753 + L1ME2 LINE L1 5816 5949 -215 807 160 8 0 chr1 213565600 213565725 -29098628 + FLAM_C SINE Alu 2 127 -6 749 233 26 145 chr1 213565725 213565990 -29098363 + L1ME2 LINE L1 5949 6155 -9 2198 120 0 0 chr1 213566065 213566364 -29097989 - AluSq SINE Alu -14 299 1 716 310 122 25 chr1 213566749 213567185 -29097168 - MLT1H1 LTR MaLR -1 554 77 861 220 21 25 chr1 213618207 213618443 -29045910 + L1MD3 LINE L1 7753 7987 -8 932 242 94 11 chr1 213619443 213619847 -29044506 - MER57A LTR ERV1 0 403 1 248 266 43 21 chr1 213620119 213620213 -29044140 - MLT1J LTR MaLR -341 170 75 1054 314 47 51 chr1 213620256 213620813 -29043540 + L2 LINE L2 1989 2545 -769 1788 194 55 71 chr1 213620813 213621323 -29043030 + MLT1D LTR MaLR 3 504 -1 1054 314 47 51 chr1 213621323 213621358 -29042995 + L2 LINE L2 2545 2579 -735 720 240 125 19 chr1 213621373 213621581 -29042772 + MIR SINE MIR 33 262 0 897 311 43 24 chr1 213621598 213622032 -29042321 + L2 LINE L2 2606 3052 -261 273 292 14 0 chr1 213622105 213622177 -29042176 + L2 LINE L2 3238 3310 -3 21 0 0 0 chr1 213622782 213622803 -29041550 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 213623344 213623367 -29040986 + (CAA)n Simple_repeat Simple_repeat 2 24 0 200 154 19 0 chr1 213623953 213624005 -29040348 + (TG)n Simple_repeat Simple_repeat 1 53 0 606 201 71 19 chr1 213625341 213625495 -29038858 + MER45 DNA AcHobo 25 186 -1395 4892 193 41 36 chr1 213625547 213626235 -29038118 + MER45R DNA AcHobo 350 1048 -533 2063 139 10 0 chr1 213626235 213626537 -29037816 + AluSq SINE Alu 1 305 -8 4892 193 41 36 chr1 213626537 213627074 -29037279 + MER45R DNA AcHobo 1048 1581 0 377 276 106 29 chr1 213627366 213627536 -29036817 - L1MEd LINE L1 -5574 545 363 209 218 36 36 chr1 213627847 213627902 -29036451 + MIR3 SINE MIR 115 169 -39 395 327 68 84 chr1 213627909 213628279 -29036074 - L2 LINE L2 -1 3271 2908 275 366 0 22 chr1 213629791 213629974 -29034379 + C-rich Low_complexity Low_complexity 1 179 0 365 148 16 0 chr1 213630184 213630245 -29034108 + AluSp SINE Alu 131 192 -111 352 203 0 0 chr1 213630235 213630304 -29034049 + AluS SINE Alu 224 292 -8 * 25 31 0 0 chr1 213630554 213630586 -29033767 + AT_rich Low_complexity Low_complexity 1 32 0 1272 196 16 79 chr1 213630700 213631098 -29033255 - LTR37A LTR ERV1 -7 419 48 1895 126 79 16 chr1 213631098 213631415 -29032938 - MER1B DNA MER1_type 0 337 1 1272 196 16 79 chr1 213631415 213631444 -29032909 - LTR37A LTR ERV1 -378 48 19 1855 176 46 51 chr1 213633542 213633974 -29030379 - MSTB1 LTR MaLR -2 430 1 227 114 23 0 chr1 213634037 213634081 -29030272 + (CAG)n Simple_repeat Simple_repeat 2 46 0 227 229 12 60 chr1 213634142 213634225 -29030128 + LTR33A LTR ERVL 420 498 -25 663 219 0 0 chr1 213634278 213634401 -29029952 + FLAM_C SINE Alu 3 125 -18 2362 142 12 26 chr1 213634528 213634958 -29029395 + Tigger2a DNA MER2_type 10 433 -1 996 288 128 20 chr1 213635018 213635515 -29028838 - L2 LINE L2 0 3313 2768 208 238 52 0 chr1 213636551 213636615 -29027738 + MIR SINE MIR 83 127 -81 252 312 0 13 chr1 213636850 213636927 -29027426 - MIR SINE MIR -106 156 81 205 345 58 22 chr1 213636942 213637081 -29027272 + MIR SINE MIR 1 144 -118 1842 54 50 13 chr1 213638463 213638753 -29025600 - AluY SINE Alu 0 332 34 195 42 0 0 chr1 213639229 213639253 -29025100 + (TTG)n Simple_repeat Simple_repeat 2 25 0 284 236 14 14 chr1 213641387 213641459 -29022894 + CT-rich Low_complexity Low_complexity 4 75 0 22 0 0 0 chr1 213642362 213642384 -29021969 + AT_rich Low_complexity Low_complexity 1 22 0 496 324 23 23 chr1 213643023 213643199 -29021154 - MIR3 SINE MIR -27 181 6 270 81 0 0 chr1 213643267 213643304 -29021049 + (CA)n Simple_repeat Simple_repeat 1 37 0 197 328 241 11 chr1 213644157 213644331 -29020022 + L3 LINE CR1 1345 1558 -19 307 220 85 51 chr1 213644652 213644770 -29019583 + MIR SINE MIR 137 258 -4 1041 261 186 28 chr1 213646163 213646664 -29017689 + MLT1E LTR MaLR 13 592 -1 355 259 31 80 chr1 213646687 213646849 -29017504 + MIR SINE MIR 63 216 -46 455 325 111 57 chr1 213647270 213647902 -29016451 - L2 LINE L2 -159 3113 2433 2028 119 10 17 chr1 213648187 213648489 -29015864 + AluSx SINE Alu 9 308 -4 540 321 85 28 chr1 213648918 213649317 -29015036 + L1MEc LINE L1 55 476 -5920 375 355 22 22 chr1 213649348 213649579 -29014774 + L1MEc LINE L1 539 769 -5627 1366 86 0 0 chr1 213649581 213649755 -29014598 - AluY SINE Alu -11 300 127 183 42 0 0 chr1 213653404 213653428 -29010925 + (CAT)n Simple_repeat Simple_repeat 2 25 0 1139 73 0 0 chr1 213655078 213655214 -29009139 - AluY SINE Alu -175 136 1 489 265 64 1 chr1 213655218 213655448 -29008905 + L1M4 LINE L1 1331 1751 -5353 747 294 90 40 chr1 213655456 213655976 -29008377 + L1M4 LINE L1 4001 4546 -2411 189 0 0 0 chr1 213657684 213657705 -29006648 + (A)n Simple_repeat Simple_repeat 1 21 0 1804 165 13 25 chr1 213658954 213659269 -29005084 + AluJb SINE Alu 1 311 -1 295 91 55 0 chr1 213659271 213659326 -29005027 + GA-rich Low_complexity Low_complexity 3 60 0 185 316 25 13 chr1 213659345 213659424 -29004929 - MIR SINE MIR -101 107 28 5161 137 23 76 chr1 213660287 213661106 -29003247 - L1MC3 LINE L1 0 7785 7041 186 43 0 0 chr1 213661106 213661129 -29003224 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 5161 137 23 76 chr1 213661129 213661439 -29002914 - L1MC3 LINE L1 -744 7041 6716 292 230 0 0 chr1 213661439 213661513 -29002840 + L1MA8 LINE L1 5097 5170 -976 247 200 0 0 chr1 213661513 213661553 -29002800 + Alu SINE Alu 1 40 -259 429 164 0 0 chr1 213661553 213661614 -29002739 + AluJb SINE Alu 208 268 -44 267 31 0 0 chr1 213661614 213661646 -29002707 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 5806 127 19 15 chr1 213661648 213662769 -29001584 + L1MA8 LINE L1 5159 6283 -8 912 278 95 61 chr1 213662950 213663465 -29000888 - L2 LINE L2 -15 3298 2754 25 0 0 0 chr1 213663540 213663565 -29000788 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr1 213663608 213663631 -29000722 + (CA)n Simple_repeat Simple_repeat 2 24 0 396 331 67 6 chr1 213664298 213664476 -28999877 + MIR SINE MIR 60 248 -14 214 316 86 34 chr1 213664506 213664623 -28999730 + L2 LINE L2 3191 3313 0 3241 18 0 3 chr1 213665599 213665990 -28998363 - L1PA3 LINE L1 -149 6006 5617 234 128 0 0 chr1 213666307 213666346 -28998007 + (GGGAGA)n Simple_repeat Simple_repeat 5 43 0 2211 121 0 3 chr1 213667211 213667518 -28996835 + AluSg SINE Alu 1 306 -4 236 259 70 7 chr1 213667863 213668006 -28996347 - L1ME4a LINE L1 -18 6103 5952 2186 149 22 0 chr1 213668073 213668429 -28995924 - THE1B LTR MaLR 0 364 1 28 48 0 0 chr1 213668566 213668608 -28995745 + AT_rich Low_complexity Low_complexity 1 42 0 330 266 39 102 chr1 213668895 213669023 -28995330 + MER91B DNA MER1_type 1 120 -70 328 185 62 0 chr1 213669023 213669088 -28995265 + MER91B DNA MER1_type 90 158 -32 1086 30 0 148 chr1 213669129 213669298 -28995055 - AluY SINE Alu -10 301 158 866 195 116 20 chr1 213672999 213673250 -28991103 - MER33 DNA MER1_type -49 275 1 485 305 46 67 chr1 213673274 213673398 -28990955 - MIR SINE MIR -6 256 138 363 244 39 16 chr1 213673398 213673525 -28990828 + MER94 DNA DNA 5 134 0 485 305 46 67 chr1 213673525 213673639 -28990714 - MIR SINE MIR -124 138 23 199 53 26 26 chr1 213673748 213673786 -28990567 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1375 241 46 23 chr1 213674084 213674479 -28989874 - MER21B LTR ERV1 -54 809 406 534 158 0 0 chr1 213674520 213674602 -28989751 - MER21B LTR ERV1 -765 98 17 873 238 27 40 chr1 213674863 213675086 -28989267 - MIR SINE MIR -6 256 37 548 233 16 0 chr1 213676939 213677068 -28987285 - MER3 DNA MER1_type -60 149 19 377 321 67 45 chr1 213677440 213677596 -28986757 - MIR SINE MIR -6 256 92 487 234 56 9 chr1 213677596 213677703 -28986650 + MER81 DNA DNA 1 112 -2 377 321 67 45 chr1 213677703 213677770 -28986583 - MIR SINE MIR -170 92 28 2508 45 0 69 chr1 213677828 213678162 -28986191 - AluY SINE Alu 0 311 1 732 258 0 0 chr1 213678587 213678746 -28985607 + MER5A DNA MER1_type 31 189 0 677 210 11 61 chr1 213678759 213678880 -28985473 + MER5B DNA MER1_type 1 112 -66 2382 83 3 0 chr1 213678880 213679180 -28985173 - AluSg SINE Alu -9 301 1 677 210 11 61 chr1 213679180 213679239 -28985114 + MER5B DNA MER1_type 112 172 -6 514 298 139 8 chr1 213680130 213680229 -28984124 - Charlie8 DNA MER1_type -70 271 186 216 0 0 0 chr1 213680229 213680253 -28984100 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 514 298 139 8 chr1 213680253 213680391 -28983962 - Charlie8 DNA MER1_type -155 186 3 185 351 182 4 chr1 213680397 213680622 -28983731 - L3 LINE CR1 -193 1384 1120 376 322 40 13 chr1 213681651 213681800 -28982553 + MIR SINE MIR 52 204 -58 21 0 0 0 chr1 213681835 213681856 -28982497 + AT_rich Low_complexity Low_complexity 1 21 0 218 200 21 21 chr1 213681922 213682017 -28982336 + GA-rich Low_complexity Low_complexity 3 97 0 190 250 159 45 chr1 213682416 213682504 -28981849 - MIR SINE MIR -109 153 56 187 163 82 82 chr1 213682607 213682656 -28981697 + L3b LINE CR1 1379 1427 -156 876 261 150 28 chr1 213682854 213683556 -28980797 - L2 LINE L2 -2 3311 2517 428 301 37 0 chr1 213683554 213683690 -28980663 + MIR SINE MIR 71 211 -51 * 2321 91 0 7 chr1 213684393 213684700 -28979653 - AluSc SINE Alu -1 308 4 1895 153 0 0 chr1 213685487 213685775 -28978578 + AluSx SINE Alu 1 288 -24 458 80 98 0 chr1 213685778 213685941 -28978412 + (TA)n Simple_repeat Simple_repeat 2 180 0 557 261 44 59 chr1 213685951 213686154 -28978199 + MLT1F1 LTR MaLR 2 201 -341 336 94 0 0 chr1 213686154 213686207 -28978146 + (TC)n Simple_repeat Simple_repeat 2 54 0 1258 202 83 54 chr1 213686248 213686319 -28978034 + MLT1F1 LTR MaLR 215 282 -285 2311 90 0 0 chr1 213686319 213686620 -28977733 + AluY SINE Alu 1 301 -10 1258 202 83 54 chr1 213686620 213686884 -28977469 + MLT1F1 LTR MaLR 282 560 -7 1359 256 77 43 chr1 213687401 213687435 -28976918 + L1ME3A LINE L1 4895 4926 -1244 3736 60 2 0 chr1 213687435 213687903 -28976450 + L1PA7 LINE L1 5678 6146 -8 1359 256 77 43 chr1 213687903 213688812 -28975541 + L1ME3A LINE L1 4926 5868 -302 4321 241 70 18 chr1 213688977 213690452 -28973901 + L1ME1 LINE L1 3826 5376 -770 1823 225 60 29 chr1 213690449 213690970 -28973383 + L1ME1 LINE L1 5625 6161 -5 * 948 230 10 0 chr1 213691544 213691773 -28972580 + AluJo SINE Alu 87 317 0 31 26 0 0 chr1 213692548 213692586 -28971767 + AT_rich Low_complexity Low_complexity 1 38 0 180 300 100 0 chr1 213693328 213693351 -28971002 - L2 LINE L2 -12 3260 3241 3498 212 25 47 chr1 213693351 213694342 -28970011 - LTR5 LTR ERVK 0 969 1 180 300 100 0 chr1 213694342 213694378 -28969975 - L2 LINE L2 -31 3241 3195 355 162 29 0 chr1 213694396 213694464 -28969889 + MER5A DNA MER1_type 27 96 -93 387 267 87 20 chr1 213694482 213694632 -28969721 - MIR SINE MIR -54 208 49 208 330 27 54 chr1 213694678 213694790 -28969563 + MIR SINE MIR 29 137 -71 236 268 174 31 chr1 213696263 213696487 -28967866 + L2 LINE L2 2697 2952 -362 25 31 0 0 chr1 213696533 213696565 -28967788 + AT_rich Low_complexity Low_complexity 1 32 0 6176 34 1 0 chr1 213696565 213697302 -28967051 + L1P LINE L1 3725 4462 -1684 309 304 52 52 chr1 213697302 213697417 -28966936 - MER5A DNA MER1_type -38 151 37 181 338 39 26 chr1 213697426 213697503 -28966850 + L2 LINE L2 3149 3226 -46 1296 156 19 13 chr1 213697775 213698092 -28966261 + MLT1A1 LTR MaLR 1 352 -13 23 0 0 0 chr1 213698793 213698816 -28965537 + AT_rich Low_complexity Low_complexity 1 23 0 273 279 139 30 chr1 213699501 213699702 -28964651 + L3 LINE CR1 627 849 -728 368 293 83 33 chr1 213699733 213699914 -28964439 + L3 LINE CR1 1077 1266 -311 216 280 20 0 chr1 213699965 213700015 -28964338 + L3 LINE CR1 1524 1574 -3 406 373 44 44 chr1 213701179 213701544 -28962809 + L3b LINE CR1 1134 1498 -85 338 361 25 8 chr1 213701590 213701712 -28962641 - L3b LINE CR1 -89 1494 1371 220 286 111 41 chr1 213702909 213703080 -28961273 + MIR3 SINE MIR 2 184 -24 1247 205 4 0 chr1 213703594 213703853 -28960500 + L1MD3 LINE L1 7729 7988 -7 995 217 27 18 chr1 213706450 213706671 -28957682 + MER58A DNA MER1_type 2 224 0 187 344 57 21 chr1 213707983 213708155 -28956198 + MIR SINE MIR 38 216 -46 393 276 122 86 chr1 213708246 213708467 -28955886 + MIR SINE MIR 34 262 0 183 256 23 0 chr1 213708645 213708688 -28955665 + L2 LINE L2 3263 3306 -7 348 318 57 56 chr1 213708796 213709153 -28955200 - L2 LINE L2 -194 3078 2716 2119 131 3 6 chr1 213709816 213710128 -28954225 + AluSx SINE Alu 1 311 -1 1423 179 10 73 chr1 213711018 213711331 -28953022 + AluJo SINE Alu 1 293 -19 1188 163 36 45 chr1 213712363 213712584 -28951769 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 213712704 213712725 -28951628 + AT_rich Low_complexity Low_complexity 1 21 0 246 301 39 10 chr1 213714324 213714427 -28949926 + L1MC/D LINE L1 5574 5679 -2129 18195 152 15 5 chr1 213715143 213716289 -28948064 + L1MA3 LINE L1 880 2013 -5552 2285 104 0 0 chr1 213716289 213716586 -28947767 - AluSx SINE Alu -15 297 1 18195 152 15 5 chr1 213716586 213721318 -28943035 + L1MA3 LINE L1 2013 6822 -743 2361 107 11 16 chr1 213721327 213721691 -28942662 + L1MA3 LINE L1 7074 7435 -289 317 298 47 78 chr1 213721716 213721843 -28942510 - L2 LINE L2 -99 3214 3097 2230 101 3 7 chr1 213721843 213722141 -28942212 + AluSg SINE Alu 2 298 -12 317 298 47 78 chr1 213722141 213722268 -28942085 - L2 LINE L2 -216 3097 2968 419 40 0 0 chr1 213722443 213722493 -28941860 + (CA)n Simple_repeat Simple_repeat 1 50 0 1302 239 15 72 chr1 213723037 213723509 -28940844 - L1ME1 LINE L1 -9 6157 5713 414 244 0 24 chr1 213723575 213723698 -28940655 - L1MC5 LINE L1 -800 7161 7042 495 304 37 0 chr1 213723929 213724064 -28940289 + L2 LINE L2 3128 3267 -5 930 57 34 17 chr1 213724379 213724554 -28939799 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 407 323 151 5 chr1 213724747 213724933 -28939420 + MIR SINE MIR 23 235 -27 435 325 103 7 chr1 213724989 213725220 -28939133 + MIR SINE MIR 3 252 -10 379 314 48 27 chr1 213726715 213726903 -28937450 - MIR SINE MIR -50 212 21 255 204 0 0 chr1 213727471 213727525 -28936828 + (TA)n Simple_repeat Simple_repeat 2 55 0 3821 96 23 0 chr1 213728218 213728778 -28935575 - L1MA2 LINE L1 0 6304 5732 476 32 16 0 chr1 213730198 213730260 -28934093 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 246 105 0 0 chr1 213730571 213730609 -28933744 + (TTG)n Simple_repeat Simple_repeat 2 39 0 323 224 47 25 chr1 213730924 213731042 -28933311 + MLT1J1 LTR MaLR 67 228 -283 2238 113 0 0 chr1 213732698 213732991 -28931362 + AluSx SINE Alu 1 293 -19 243 88 0 0 chr1 213734185 213734219 -28930134 + (T)n Simple_repeat Simple_repeat 1 34 0 304 236 200 0 chr1 213735309 213735419 -28928934 - MIR3 SINE MIR -38 170 39 282 95 0 0 chr1 213737360 213737402 -28926951 + 5S rRNA rRNA 1 42 -79 491 227 16 62 chr1 213738061 213738189 -28926164 + MER5A DNA MER1_type 46 167 -22 740 292 23 39 chr1 213738236 213738493 -28925860 - MIR SINE MIR -6 256 4 249 377 123 0 chr1 213738517 213738631 -28925722 + L2 LINE L2 3137 3264 -8 503 70 0 81 chr1 213738637 213738689 -28925664 - MADE1 DNA Mariner 0 80 36 2111 92 0 25 chr1 213738689 213738970 -28925383 + AluSc SINE Alu 30 303 -6 503 70 0 81 chr1 213738970 213739003 -28925350 - MADE1 DNA Mariner -44 36 2 307 70 0 0 chr1 213739051 213739094 -28925259 + MADE1 DNA Mariner 1 43 -37 186 176 0 0 chr1 213739839 213739890 -28924463 + (TA)n Simple_repeat Simple_repeat 1 51 0 365 324 14 14 chr1 213741588 213741727 -28922626 - MIR SINE MIR -61 201 63 540 270 36 122 chr1 213742025 213742139 -28922214 + MIR SINE MIR 6 128 -134 1729 147 35 21 chr1 213742139 213742519 -28921834 - AluSx SINE Alu 0 384 1 540 270 36 122 chr1 213742519 213742680 -28921673 + MIR SINE MIR 128 259 -3 23 0 0 0 chr1 213742695 213742718 -28921635 + AT_rich Low_complexity Low_complexity 1 23 0 216 97 0 0 chr1 213743270 213743301 -28921052 + (CAGC)n Simple_repeat Simple_repeat 4 34 0 364 271 163 36 chr1 213743333 213743554 -28920799 - L2 LINE L2 -76 3237 2989 181 246 33 16 chr1 213743648 213743709 -28920644 - L2 LINE L2 -485 2829 2768 299 278 159 33 chr1 213743900 213744051 -28920302 + MIR3 SINE MIR 18 187 -21 373 312 35 11 chr1 213744121 213744282 -28920071 + MIR SINE MIR 17 184 -66 473 295 45 0 chr1 213745230 213745342 -28919011 + MIR SINE MIR 31 147 -115 2058 104 10 62 chr1 213746140 213746449 -28917904 - AluSx SINE Alu -19 293 1 762 294 26 0 chr1 213747524 213747718 -28916635 + MIR SINE MIR 31 229 -33 220 143 36 18 chr1 213747775 213747831 -28916522 + GA-rich Low_complexity Low_complexity 4 60 0 1184 171 125 117 chr1 213747968 213748048 -28916305 - MSTD LTR MaLR 0 396 318 1861 151 14 7 chr1 213748048 213748332 -28916021 - AluJb SINE Alu -26 286 1 1184 171 125 117 chr1 213748332 213748644 -28915709 - MSTD LTR MaLR -78 318 1 236 328 43 17 chr1 213748685 213748801 -28915552 - MIR3 SINE MIR -45 163 45 561 365 79 17 chr1 213749285 213749638 -28914715 + L2 LINE L2 2599 2973 -341 189 0 0 0 chr1 213749667 213749688 -28914665 + (CA)n Simple_repeat Simple_repeat 2 22 0 193 204 23 0 chr1 213749891 213749935 -28914418 + L2 LINE L2 3267 3311 -2 530 290 42 42 chr1 213749967 213750160 -28914193 + L2 LINE L2 3107 3299 -14 198 103 0 0 chr1 213750161 213750190 -28914163 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 194 352 0 0 chr1 213750193 213750247 -28914106 + L2 LINE L2 3201 3254 -18 280 308 96 27 chr1 213752160 213752306 -28912047 + MIR SINE MIR 11 142 -66 2533 163 24 6 chr1 213752354 213752852 -28911501 + L1MB4 LINE L1 5636 6142 -38 26 30 0 0 chr1 213752912 213752945 -28911408 + AT_rich Low_complexity Low_complexity 1 33 0 529 40 0 26 chr1 213752981 213753057 -28911296 - L1PA6 LINE L1 0 6154 6081 1548 103 0 21 chr1 213753588 213753822 -28910531 - Charlie3 DNA MER1_type -8 2702 2474 1886 175 3 6 chr1 213753825 213754163 -28910190 + L1MC1 LINE L1 5981 6317 -16 1632 224 17 22 chr1 213754208 213754624 -28909729 + MLT1C LTR MaLR 53 466 -1 299 355 11 51 chr1 213754657 213754933 -28909420 + L2 LINE L2 2835 3099 -173 203 348 67 11 chr1 213754939 213755028 -28909325 + L2 LINE L2 3215 3308 -5 190 43 0 0 chr1 213755394 213755417 -28908936 + MIR SINE MIR 124 146 -62 1395 209 30 25 chr1 213755829 213756192 -28908161 - MLT1A1 LTR MaLR 0 365 1 180 151 38 19 chr1 213757049 213757102 -28907251 + (TA)n Simple_repeat Simple_repeat 1 54 0 535 240 40 20 chr1 213758565 213758715 -28905638 + LTR40b LTR ERVL 5 157 -305 1082 193 34 4 chr1 213758747 213759012 -28905341 - L1MA4 LINE L1 -4 6296 6024 1319 253 9 0 chr1 213759061 213759389 -28904964 - L1ME1 LINE L1 -7 6159 5829 2751 143 16 0 chr1 213759547 213760038 -28904315 - L1PB4 LINE L1 -326 5830 5332 689 217 0 0 chr1 213761362 213761477 -28902876 + FLAM_A SINE Alu 1 115 -18 32 43 0 0 chr1 213761477 213761523 -28902830 + AT_rich Low_complexity Low_complexity 1 46 0 210 238 0 0 chr1 213761693 213761735 -28902618 + GA-rich Low_complexity Low_complexity 2 43 0 504 269 160 45 chr1 213761773 213762041 -28902312 + L3 LINE CR1 920 1218 -359 470 232 47 10 chr1 213762526 213762673 -28901680 - MLT1J2 LTR MaLR -188 258 106 1976 141 0 20 chr1 213762951 213763255 -28901098 - AluJo SINE Alu -14 298 1 306 289 144 43 chr1 213764488 213764675 -28899678 - MIR SINE MIR -7 255 50 1004 84 0 0 chr1 213765360 213765503 -28898850 + L1MB1 LINE L1 6026 6168 0 1495 184 14 34 chr1 213765925 213766219 -28898134 + AluJo SINE Alu 1 288 -24 754 226 13 84 chr1 213766542 213766768 -28897585 - MER63A DNA MER1_type 0 210 1 505 277 26 13 chr1 213766823 213766978 -28897375 + MIR SINE MIR 81 237 -25 1026 222 0 0 chr1 213767352 213767541 -28896812 - MER5A DNA MER1_type 0 189 1 1094 299 57 33 chr1 213767683 213768174 -28896179 - MLT1H LTR MaLR -28 521 19 1629 216 0 3 chr1 213770219 213770516 -28893837 + AluJo SINE Alu 1 296 -16 2021 163 0 0 chr1 213770554 213770861 -28893492 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr1 213771542 213771567 -28892786 + AT_rich Low_complexity Low_complexity 1 25 0 570 139 10 0 chr1 213771820 213771921 -28892432 + MER103 DNA DNA 10 111 -55 730 305 165 10 chr1 213772328 213772735 -28891618 - L2 LINE L2 0 3313 2844 252 143 0 0 chr1 213772811 213772853 -28891500 + (ATG)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr1 213772882 213772917 -28891436 + (TC)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr1 213772916 213772940 -28891413 + (CG)n Simple_repeat Simple_repeat 1 24 0 * 2285 114 0 0 chr1 213772940 213773237 -28891116 - AluSx SINE Alu -3 309 13 461 287 132 19 chr1 213773474 213773732 -28890621 - MLT1J2 LTR MaLR -147 303 17 207 219 0 0 chr1 213774165 213774206 -28890147 - L2 LINE L2 -3 3269 3229 366 237 153 38 chr1 213774465 213774596 -28889757 + MIR SINE MIR 79 224 -38 752 176 0 0 chr1 213775061 213775186 -28889167 + AluJb SINE Alu 1 125 -187 24 32 0 0 chr1 213775186 213775217 -28889136 + AT_rich Low_complexity Low_complexity 1 31 0 706 325 113 52 chr1 213777308 213777898 -28886455 + L2 LINE L2 2066 2618 -654 315 0 0 0 chr1 213777898 213777933 -28886420 + (CA)n Simple_repeat Simple_repeat 1 35 0 706 325 113 52 chr1 213777933 213778494 -28885859 + L2 LINE L2 2618 3272 0 13202 115 30 22 chr1 213778679 213780487 -28883866 + Tigger1 DNA MER2_type 1 1829 -589 6665 83 8 0 chr1 213780487 213781605 -28882748 + L1PA11 LINE L1 5048 6173 -1 13202 115 30 22 chr1 213781605 213781994 -28882359 + Tigger1 DNA MER2_type 1829 2214 -204 6388 60 3 7 chr1 213781997 213782864 -28881489 - L1PA7 LINE L1 -11 6143 5280 843 191 57 14 chr1 213782864 213783074 -28881279 + Tigger1 DNA MER2_type 2194 2412 -6 233 246 15 15 chr1 213783109 213783174 -28881179 + L2 LINE L2 2688 2752 -562 217 202 24 119 chr1 213784470 213784554 -28879799 + MIR SINE MIR 102 177 -85 1078 356 85 25 chr1 213784748 213785370 -28878983 + MLT2F LTR ERVL 3 626 -2 2575 53 0 0 chr1 213785979 213786283 -28878070 - AluY SINE Alu -7 304 1 400 198 22 11 chr1 213786375 213786466 -28877887 + MLT1A1 LTR MaLR 1 92 -273 23 33 0 0 chr1 213787185 213787215 -28877138 + AT_rich Low_complexity Low_complexity 1 30 0 201 318 15 15 chr1 213787551 213787617 -28876736 + MIR3 SINE MIR 126 191 -17 24 53 0 0 chr1 213787927 213787965 -28876388 + AT_rich Low_complexity Low_complexity 1 38 0 2411 210 37 17 chr1 213790409 213791334 -28873019 - MER63D DNA MER1_type 0 1061 52 282 29 0 0 chr1 213791508 213791543 -28872810 + (TG)n Simple_repeat Simple_repeat 2 36 0 2179 175 5 22 chr1 213791547 213791948 -28872405 + MSTD LTR MaLR 2 395 -1 21 0 0 0 chr1 213792058 213792079 -28872274 + AT_rich Low_complexity Low_complexity 1 21 0 6139 221 48 26 chr1 213793143 213795346 -28869007 + L1MDa LINE L1 1 2490 -4050 1970 135 22 21 chr1 213795315 213796041 -28868312 + L1PB4 LINE L1 5371 6545 -5 * 1970 136 7 0 chr1 213796041 213796347 -28868006 + L1PB4 LINE L1 5845 6155 -1 429 131 0 65 chr1 213796357 213796464 -28867889 + L1MDa LINE L1 2479 2578 -3962 412 211 25 68 chr1 213796571 213796732 -28867621 + L1MDa LINE L1 2577 2730 -3991 1402 144 74 35 chr1 213796732 213797016 -28867337 - MER44D DNA MER2_type -1 608 44 752 283 27 17 chr1 213797042 213797351 -28867002 + L1MDa LINE L1 2688 2992 -3548 863 175 45 40 chr1 213797357 213797557 -28866796 + MLT1B LTR MaLR 1 201 -189 342 0 0 0 chr1 213797616 213797654 -28866699 + (TG)n Simple_repeat Simple_repeat 1 38 0 2668 159 62 21 chr1 213797697 213798453 -28865900 + MER21A LTR ERV1 20 928 -3 978 178 0 0 chr1 213798458 213798632 -28865721 + MLT1B LTR MaLR 214 387 -3 742 195 162 4 chr1 213798634 213798875 -28865478 + L1MDa LINE L1 3014 3292 -3248 4385 202 18 47 chr1 213798888 213799872 -28864481 + L1M2c LINE L1 65 1019 -5770 2132 125 3 3 chr1 213799872 213800176 -28864177 + AluSc SINE Alu 6 309 0 4385 202 18 47 chr1 213800176 213800211 -28864142 + L1M2c LINE L1 1019 1054 -5735 1199 124 21 0 chr1 213800323 213800517 -28863836 - Tigger1 DNA MER2_type -1116 1302 1105 1472 194 31 9 chr1 213800648 213800972 -28863381 - LTR53 LTR ERVL 0 519 189 2412 52 0 39 chr1 213801306 213801615 -28862738 + AluY SINE Alu 1 297 -14 214 239 0 0 chr1 213801796 213801842 -28862511 - L2 LINE L2 -2 3311 3266 232 314 19 51 chr1 213802419 213802575 -28861778 - L2 LINE L2 -4 3309 3159 438 286 97 9 chr1 213802594 213802811 -28861542 + MIR SINE MIR 19 254 -8 237 65 0 0 chr1 213802814 213802845 -28861508 + (TTA)n Simple_repeat Simple_repeat 3 33 0 414 281 31 8 chr1 213802976 213803104 -28861249 - MIR SINE MIR -8 254 124 354 332 45 45 chr1 213803100 213803302 -28861051 - L2 LINE L2 -263 3009 2808 * 13812 174 19 9 chr1 213803395 213807699 -28856654 - L1PB1 LINE L1 -1 6866 2524 271 330 31 54 chr1 213808375 213808543 -28855810 - MIR SINE MIR -31 177 14 2182 105 0 0 chr1 213808618 213808926 -28855427 - AluSx SINE Alu 0 313 6 190 370 66 22 chr1 213809256 213809483 -28854870 + L2 LINE L2 2430 2666 -648 988 140 5 59 chr1 213809489 213809675 -28854678 - FRAM SINE Alu -4 172 1 5324 54 7 12 chr1 213810096 213810782 -28853571 - L1PA8 LINE L1 0 6172 5490 487 309 78 19 chr1 213810846 213811115 -28853238 + Charlie8 DNA MER1_type 1 285 -2132 506 279 123 5 chr1 213811147 213811351 -28853002 + MIR SINE MIR 19 246 -16 541 153 12 0 chr1 213811417 213811502 -28852851 - 5S rRNA rRNA -35 86 1 317 325 163 17 chr1 213811727 213811967 -28852386 + L2 LINE L2 3019 3293 -20 490 303 35 0 chr1 213811987 213812132 -28852221 + MIR SINE MIR 113 262 0 37 23 0 0 chr1 213813311 213813355 -28850998 + AT_rich Low_complexity Low_complexity 1 44 0 278 255 245 0 chr1 213813757 213813855 -28850498 - MER5A DNA MER1_type 0 189 68 218 203 0 16 chr1 213813862 213813926 -28850427 + CT-rich Low_complexity Low_complexity 3 65 0 * 266 148 0 50 chr1 213813912 213814013 -28850340 + (TTTC)n Simple_repeat Simple_repeat 3 98 0 579 169 0 21 chr1 213814082 213814224 -28850129 + CT-rich Low_complexity Low_complexity 1 139 0 524 168 136 0 chr1 213814224 213814349 -28850004 - FRAM SINE Alu 0 176 35 253 318 0 0 chr1 213814354 213814417 -28849936 - MER5A DNA MER1_type -119 70 8 246 81 0 0 chr1 213814866 213814903 -28849450 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 2581 133 16 16 chr1 213815721 213816149 -28848204 - MSTA LTR MaLR 0 428 1 3610 203 57 40 chr1 213816727 213817288 -28847065 - L1ME1 LINE L1 -4 6162 5612 2578 46 0 3 chr1 213817288 213817594 -28846759 - AluY SINE Alu -6 305 1 3610 203 57 40 chr1 213817594 213818787 -28845566 - L1ME1 LINE L1 -554 5612 4384 1349 93 19 19 chr1 213819060 213819275 -28845078 + THE1C LTR MaLR 2 216 -159 9105 23 0 0 chr1 213819275 213821113 -28843240 - L1PA3 LINE L1 0 6155 4318 4772 25 2 0 chr1 213821113 213821701 -28842652 + L1PA3 LINE L1 3724 4312 -1834 1118 118 6 0 chr1 213821701 213821870 -28842483 + THE1C LTR MaLR 206 375 0 778 185 77 120 chr1 213822209 213822533 -28841820 + L1MB7 LINE L1 5813 6122 -62 1797 182 6 20 chr1 213822651 213822992 -28841361 - MER58B DNA MER1_type -1 340 5 205 204 37 37 chr1 213823671 213823725 -28840628 + MIR3 SINE MIR 14 67 -141 2245 103 0 0 chr1 213824604 213824905 -28839448 - AluY SINE Alu -10 301 1 1472 194 31 9 chr1 213825239 213825563 -28838790 + LTR53 LTR ERVL 189 519 0 303 305 47 39 chr1 213825799 213825927 -28838426 - L2 LINE L2 -42 3271 3143 1131 273 82 0 chr1 213825961 213826276 -28838077 + MER58B DNA MER1_type 1 341 0 242 340 28 9 chr1 213826312 213826418 -28837935 - L2 LINE L2 -252 3061 2954 304 234 26 13 chr1 213826461 213826538 -28837815 - L2 LINE L2 -1 3312 3235 747 206 201 0 chr1 213826546 213826740 -28837613 - MER46A DNA MER2_type -1 235 3 807 343 84 32 chr1 213826740 213827457 -28836896 - L2 LINE L2 -1225 2089 1336 1445 70 23 14 chr1 213827586 213827800 -28836553 + THE1C LTR MaLR 2 217 -158 425 233 51 91 chr1 213828266 213828562 -28835791 + HAL1 LINE L1 1133 1416 -1091 676 302 7 17 chr1 213828568 213828869 -28835484 + HAL1 LINE L1 1791 2088 -419 395 285 6 101 chr1 213830182 213830340 -28834013 + L2 LINE L2 3125 3267 -5 578 71 12 0 chr1 213830361 213830445 -28833908 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 408 302 111 0 chr1 213831264 213831390 -28832963 + L2 LINE L2 3125 3264 -8 517 184 19 0 chr1 213831612 213831715 -28832638 - Tigger2 DNA MER2_type 0 2718 2614 351 314 95 0 chr1 213831967 213832072 -28832281 - L2 LINE L2 0 3272 3158 230 325 0 0 chr1 213832127 213832210 -28832143 + MIR SINE MIR 168 250 -12 187 277 0 0 chr1 213833062 213833109 -28831244 - MIR SINE MIR 0 262 216 23 123 0 0 chr1 213833287 213833344 -28831009 + AT_rich Low_complexity Low_complexity 1 57 0 391 322 153 11 chr1 213833518 213833695 -28830658 + MIR3 SINE MIR 7 208 0 2213 208 62 40 chr1 213833798 213834399 -28829954 + MLT1E2 LTR MaLR 13 626 0 24 0 0 0 chr1 213834632 213834656 -28829697 + AT_rich Low_complexity Low_complexity 1 24 0 800 169 36 46 chr1 213834938 213835133 -28829220 - MER112 DNA MER1_type -3 257 65 582 307 56 0 chr1 213835214 213835393 -28828960 - MIR SINE MIR -51 211 23 2187 99 0 7 chr1 213835510 213835822 -28828531 - AluSq SINE Alu 0 310 1 2534 72 0 0 chr1 213836543 213836850 -28827503 + AluY SINE Alu 3 309 -2 714 266 102 48 chr1 213840717 213841269 -28823084 - MLT2F LTR ERVL -8 655 1 211 274 0 32 chr1 213841420 213841482 -28822871 + L2 LINE L2 3213 3272 0 * 269 293 84 68 chr1 213841478 213841669 -28822684 + MIR3 SINE MIR 7 200 -8 194 246 53 18 chr1 213842463 213842520 -28821833 - L2 LINE L2 -6 3266 3208 581 237 14 22 chr1 213842887 213843026 -28821327 - L1MC1 LINE L1 -9 6324 6187 2085 140 0 10 chr1 213843065 213843373 -28820980 - AluSx SINE Alu -7 305 1 402 326 48 26 chr1 213844631 213844861 -28819492 - MIR SINE MIR -27 235 1 1653 184 3 3 chr1 213844914 213845196 -28819157 + L1MC1 LINE L1 6034 6315 -18 1642 154 98 11 chr1 213845224 213845509 -28818844 - AluJo SINE Alu -2 310 1 189 0 0 0 chr1 213845512 213845533 -28818820 + (TA)n Simple_repeat Simple_repeat 1 21 0 1726 181 25 0 chr1 213845540 213845821 -28818532 - AluSx SINE Alu -24 288 1 22 0 0 0 chr1 213845821 213845843 -28818510 + AT_rich Low_complexity Low_complexity 1 22 0 502 295 200 0 chr1 213851700 213851900 -28812453 - MIR SINE MIR -11 251 12 2494 229 35 15 chr1 213852197 213852746 -28811607 + REP3 LTR ERV 1 560 -2 21 36 0 0 chr1 213852856 213852884 -28811469 + AT_rich Low_complexity Low_complexity 1 28 0 264 167 0 0 chr1 213852885 213852933 -28811420 + (CA)n Simple_repeat Simple_repeat 1 48 0 2764 89 17 0 chr1 213853465 213853812 -28810541 - THE1A LTR MaLR -2 353 1 213 39 0 0 chr1 213853824 213853850 -28810503 + (A)n Simple_repeat Simple_repeat 1 26 0 430 303 61 0 chr1 213854470 213854635 -28809718 - MIR SINE MIR 0 262 88 601 118 0 29 chr1 213855470 213855572 -28808781 + L1PA6 LINE L1 6053 6151 -3 23 0 0 0 chr1 213855572 213855595 -28808758 + AT_rich Low_complexity Low_complexity 1 23 0 182 274 0 116 chr1 213855645 213855740 -28808613 - MIR SINE MIR -158 104 21 1841 169 10 0 chr1 213856047 213856354 -28807999 - AluJo SINE Alu -2 310 1 6366 109 10 15 chr1 213856373 213857867 -28806486 - L1PA14 LINE L1 -3 6158 4675 29 47 0 0 chr1 213858027 213858070 -28806283 + AT_rich Low_complexity Low_complexity 1 43 0 964 206 81 81 chr1 213858635 213858886 -28805467 + L2 LINE L2 2343 2596 -718 1687 154 47 24 chr1 213858886 213859184 -28805169 - AluJo SINE Alu -7 305 1 964 206 81 81 chr1 213859184 213859291 -28805062 + L2 LINE L2 2595 2701 -613 1817 273 102 48 chr1 213859299 213860150 -28804203 - L1MC4 LINE L1 -96 7712 6853 285 29 0 0 chr1 213860152 213860186 -28804167 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1278 53 13 0 chr1 213860186 213860338 -28804015 - L1PA7 LINE L1 -18 6136 5983 5124 52 1 1 chr1 213860338 213861185 -28803168 + L1PA7 LINE L1 5022 5867 -287 3483 226 82 62 chr1 213861201 213861787 -28802566 - L1MC3 LINE L1 -6 7779 7109 228 259 19 0 chr1 213861787 213861841 -28802512 - MLT1F1 LTR MaLR -442 125 71 3483 226 82 62 chr1 213861841 213862290 -28802063 - L1MC3 LINE L1 -676 7109 6670 405 235 29 0 chr1 213862528 213862630 -28801723 - MER94 DNA DNA -29 105 1 2426 172 36 124 chr1 213862891 213863560 -28800793 + LTR9 LTR ERV1 1 610 -2 2149 104 7 7 chr1 213863695 213863994 -28800359 - AluSc SINE Alu -10 299 1 1667 189 4 0 chr1 213865053 213865334 -28799019 - AluJo SINE Alu -30 282 1 2468 171 11 23 chr1 213865542 213865982 -28798371 + L1PB4 LINE L1 5715 6149 -7 255 393 60 0 chr1 213866015 213866132 -28798221 + MIR SINE MIR 24 147 -61 267 323 8 48 chr1 213866181 213866305 -28798048 + MIR SINE MIR 71 189 -73 26 64 0 0 chr1 213866944 213866991 -28797362 + AT_rich Low_complexity Low_complexity 1 47 0 877 202 79 15 chr1 213867002 213867205 -28797148 - MIR SINE MIR -26 236 21 198 310 133 53 chr1 213867386 213867499 -28796854 - L3 LINE CR1 -38 1539 1418 44988 39 0 5 chr1 213868029 213874221 -28790132 + L1PA3 LINE L1 1 6167 0 583 284 51 15 chr1 213874274 213874471 -28789882 + MIR SINE MIR 53 256 -6 299 268 81 49 chr1 213874485 213874608 -28789745 - MIR SINE MIR -64 198 72 200 254 0 55 chr1 213874617 213874672 -28789681 + MIR SINE MIR 211 262 0 16698 170 40 5 chr1 213874993 213881267 -28783086 + L1PB2 LINE L1 1 6520 -347 497 57 0 14 chr1 213881267 213881337 -28783016 + (TA)n Simple_repeat Simple_repeat 1 69 0 16698 170 40 5 chr1 213881337 213881696 -28782657 + L1PB2 LINE L1 6520 6865 -2 5951 80 18 5 chr1 213881924 213882760 -28781593 + L1P LINE L1 4265 5111 -1035 184 320 107 10 chr1 213883909 213884012 -28780341 + MIR SINE MIR 6 118 -144 2333 103 0 7 chr1 213884013 213884323 -28780030 + AluSx SINE Alu 1 308 -4 429 249 53 47 chr1 213884435 213884604 -28779749 - MIR SINE MIR -59 203 34 2271 180 50 102 chr1 213884645 213884975 -28779378 + MER90 LTR ERV1 5 286 -328 1541 154 4 15 chr1 213884975 213885234 -28779119 + AluJo SINE Alu 41 296 -16 2271 180 50 102 chr1 213885234 213885547 -28778806 + MER90 LTR ERV1 286 614 0 487 284 37 74 chr1 213886002 213886192 -28778161 - MIR SINE MIR -36 226 44 2193 128 0 0 chr1 213886345 213886657 -28777696 - AluSx SINE Alu 0 312 1 1769 134 11 8 chr1 213887897 213888165 -28776188 + AluSx SINE Alu 1 269 -43 797 158 20 0 chr1 213888171 213888317 -28776036 - MER57A LTR ERV1 -254 149 1 189 340 87 10 chr1 213888550 213888653 -28775700 + L2 LINE L2 2950 3060 -212 334 274 52 74 chr1 213888836 213888971 -28775382 - MIR SINE MIR -57 205 74 195 42 0 0 chr1 213889009 213889033 -28775320 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 314 293 106 25 chr1 213889035 213889233 -28775120 - L2 LINE L2 -15 3298 3085 1973 98 4 0 chr1 213889795 213890061 -28774292 + AluSx SINE Alu 1 267 -45 24 0 0 0 chr1 213890238 213890262 -28774091 + AT_rich Low_complexity Low_complexity 1 24 0 252 0 0 0 chr1 213890943 213890971 -28773382 + (T)n Simple_repeat Simple_repeat 1 28 0 829 209 66 28 chr1 213891599 213891810 -28772543 + MER20 DNA MER1_type 1 219 0 249 33 0 0 chr1 213891967 213891997 -28772356 + (A)n Simple_repeat Simple_repeat 1 30 0 2501 74 0 0 chr1 213892350 213892661 -28771692 + AluY SINE Alu 1 311 0 833 152 8 0 chr1 213893596 213893728 -28770625 + FLAM_C SINE Alu 1 133 0 294 258 110 50 chr1 213895989 213896171 -28768182 + L1ME4a LINE L1 5490 5682 -439 304 267 123 0 chr1 213896213 213896359 -28767994 + L1ME4a LINE L1 5754 5917 -204 274 192 106 58 chr1 213896383 213896487 -28767866 + L1ME4a LINE L1 5991 6099 -22 935 227 46 34 chr1 213896514 213896752 -28767601 + MIR SINE MIR 22 262 0 1564 170 6 71 chr1 213896766 213897077 -28767276 - AluJo SINE Alu -10 302 12 2337 103 0 6 chr1 213897495 213897807 -28766546 - AluSx SINE Alu 0 312 3 514 286 82 29 chr1 213899164 213899291 -28765062 + MER5A DNA MER1_type 10 150 -39 2342 97 3 3 chr1 213899291 213899589 -28764764 + AluSq SINE Alu 3 300 -13 514 286 82 29 chr1 213899589 213899632 -28764721 + MER5A DNA MER1_type 150 189 0 230 257 55 64 chr1 213900404 213900513 -28763840 - MIR SINE MIR 0 262 155 2880 128 100 5 chr1 213900516 213901087 -28763266 + LTR24C LTR ERV1 1 625 -10 525 254 25 0 chr1 213901095 213901213 -28763140 - MIR SINE MIR -111 151 31 394 237 169 23 chr1 213901310 213901529 -28762824 + MER112 DNA MER1_type 2 252 -4 315 0 0 0 chr1 213901667 213901702 -28762651 + (TG)n Simple_repeat Simple_repeat 1 35 0 417 66 0 0 chr1 213901704 213901765 -28762588 + (GA)n Simple_repeat Simple_repeat 2 62 0 974 186 6 0 chr1 213901772 213901928 -28762425 - AluJo SINE Alu -36 276 120 225 0 0 0 chr1 213901949 213901974 -28762379 + (TG)n Simple_repeat Simple_repeat 2 26 0 680 135 0 18 chr1 213901974 213902113 -28762240 - FLAM_C SINE Alu 0 171 35 282 290 51 58 chr1 213902334 213902472 -28761881 + MIR SINE MIR 30 166 -96 559 256 126 35 chr1 213902550 213902780 -28761573 - MIR SINE MIR 0 262 12 181 295 13 26 chr1 213902952 213903030 -28761323 - L2 LINE L2 -571 2743 2667 2111 122 6 10 chr1 213903575 213903886 -28760467 + AluSx SINE Alu 2 311 -1 495 278 63 21 chr1 213904095 213904286 -28760067 + MIR3 SINE MIR 3 201 -7 944 246 35 5 chr1 213904588 213904791 -28759562 - MIR SINE MIR -48 214 6 2255 104 0 0 chr1 213905048 213905345 -28759008 + AluSx SINE Alu 1 297 -15 307 274 113 0 chr1 213905760 213905866 -28758487 + MIR3 SINE MIR 91 208 0 876 194 115 9 chr1 213906668 213906885 -28757468 - MIR SINE MIR -17 245 6 193 383 37 37 chr1 213906968 213907075 -28757278 + MIR SINE MIR 6 112 -150 1833 142 4 0 chr1 213907098 213907366 -28756987 - AluSx SINE Alu -13 299 31 2061 130 7 13 chr1 213907370 213907671 -28756682 - AluSx SINE Alu -13 299 1 260 363 15 22 chr1 213908593 213908728 -28755625 + MIR3 SINE MIR 21 154 -54 528 184 0 29 chr1 213909726 213909829 -28754524 + AluJ/FLAM SINE Alu 1 100 -212 424 327 41 37 chr1 213909829 213910444 -28753909 - L1MEd LINE L1 -4932 1187 571 267 256 0 34 chr1 213911004 213911121 -28753232 - L1M4 LINE L1 -1455 4691 4579 21 0 0 0 chr1 213911338 213911359 -28752994 + AT_rich Low_complexity Low_complexity 1 21 0 4523 168 41 22 chr1 213911446 213912677 -28751676 - L1MB1 LINE L1 0 6168 4902 1874 167 0 3 chr1 213912677 213912971 -28751382 - AluJb SINE Alu -19 293 1 4523 168 41 22 chr1 213912971 213913610 -28750743 - L1MB1 LINE L1 -1266 4902 4277 36131 45 4 0 chr1 213913635 213919135 -28745218 - L1PA4 LINE L1 -5 6150 631 6035 211 98 16 chr1 213919133 213919171 -28745182 - L1MB1 LINE L1 -1860 4286 4253 * 300 27 0 0 chr1 213919171 213919208 -28745145 + (TG)n Simple_repeat Simple_repeat 2 38 0 6035 211 98 16 chr1 213919208 213919700 -28744653 - L1MB1 LINE L1 -1893 4253 3803 1773 170 3 3 chr1 213919700 213920007 -28744346 - AluJo SINE Alu 0 307 1 6035 211 98 16 chr1 213920007 213921250 -28743103 - L1MB1 LINE L1 -2343 3803 2365 304 250 44 83 chr1 213921330 213921558 -28742795 - L1M4 LINE L1 -2589 3557 3339 888 234 5 5 chr1 213921723 213921920 -28742433 - L2 LINE L2 -955 2359 2163 1143 196 64 26 chr1 213921920 213922232 -28742121 - MER5C DNA MER1_type 0 324 1 * 1362 269 76 49 chr1 213922232 213922678 -28741675 - L2 LINE L2 -1152 2162 1697 1391 145 27 54 chr1 213922678 213922975 -28741378 + L1MB3 LINE L1 5891 6179 -4 1362 269 76 49 chr1 213922975 213923058 -28741295 - L2 LINE L2 -1617 1697 1618 831 214 67 45 chr1 213923376 213923600 -28740753 - MIR SINE MIR -2 260 32 29 0 0 0 chr1 213923876 213923905 -28740448 + AT_rich Low_complexity Low_complexity 1 29 0 786 244 22 96 chr1 213925326 213925597 -28738756 - MIR SINE MIR -10 252 2 22 35 0 0 chr1 213928987 213929016 -28735337 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr1 213929848 213929873 -28734480 + AT_rich Low_complexity Low_complexity 1 25 0 667 189 0 87 chr1 213930037 213930233 -28734120 - MER96B DNA MER1_type? -236 181 3 21 57 0 0 chr1 213931675 213931710 -28732643 + AT_rich Low_complexity Low_complexity 1 35 0 2055 151 0 0 chr1 213931984 213932282 -28732071 - AluSx SINE Alu -14 298 1 1075 65 0 0 chr1 213932941 213933079 -28731274 - L1PA3 LINE L1 -3 6152 6015 321 47 0 0 chr1 213933153 213933196 -28731157 - U5 snRNA snRNA -68 48 6 4309 23 0 15 chr1 213933197 213933672 -28730681 + SVA Other Other 919 1386 0 2139 249 40 4 chr1 213933880 213934562 -28729791 + L1M4 LINE L1 2205 2910 -3236 559 284 43 37 chr1 213934589 213934783 -28729570 - L1ME4a LINE L1 -295 5826 5628 1724 156 7 49 chr1 213934783 213935090 -28729263 - AluJb SINE Alu -18 294 1 559 284 43 37 chr1 213935090 213935247 -28729106 - L1ME4a LINE L1 -493 5628 5473 1524 197 49 0 chr1 213935286 213935631 -28728722 + Charlie1 DNA MER1_type 1762 2123 -638 1209 169 24 0 chr1 213935634 213935847 -28728506 + MLT2B1 LTR ERVL 303 520 0 2299 159 79 21 chr1 213935855 213936438 -28727915 + Charlie1 DNA MER1_type 2139 2755 -6 356 342 18 6 chr1 213936471 213936649 -28727704 - HERV16 LTR ERVL -2217 2795 2626 42878 36 22 3 chr1 213936880 213942905 -28721448 - L1PA3 LINE L1 -1 6154 8 684 286 62 0 chr1 213942905 213943083 -28721270 - HERV16 LTR ERVL -3384 2380 2192 985 330 46 62 chr1 213943096 213943167 -28721186 - HERV16 LTR ERVL -2917 2079 2008 2157 107 0 7 chr1 213943167 213943180 -28721173 - AluSg SINE Alu -14 296 284 369 0 0 0 chr1 213943180 213943221 -28721132 + (TG)n Simple_repeat Simple_repeat 2 42 0 2157 107 0 7 chr1 213943221 213943505 -28720848 - AluSg SINE Alu -26 284 1 985 330 46 62 chr1 213943505 213944550 -28719803 - HERV16 LTR ERVL -2988 2008 1013 1495 229 93 52 chr1 213944592 213945095 -28719258 - MLT1H LTR MaLR -18 531 8 723 283 123 0 chr1 213946701 213946913 -28717440 - MIR SINE MIR -7 255 18 31033 74 6 1 chr1 213947725 213952537 -28711816 + L1PA6 LINE L1 1304 6135 -19 307 221 17 4 chr1 213952637 213952712 -28711641 - AluJ/FLAM SINE Alu -245 57 1 208 313 82 15 chr1 213952843 213952977 -28711376 + L2 LINE L2 3155 3297 -16 358 245 122 10 chr1 213953195 213953293 -28711060 + L2 LINE L2 3205 3313 0 326 221 23 23 chr1 213953322 213953408 -28710945 - MLT1I LTR MaLR 0 409 324 1241 208 59 35 chr1 213953983 213954271 -28710082 + LTR16C LTR ERVL 195 489 -2 279 0 0 0 chr1 213954304 213954335 -28710018 + (TG)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr1 213954334 213954355 -28709998 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 249 281 33 74 chr1 213955052 213955173 -28709180 + MIR3 SINE MIR 1 116 -92 2366 236 104 26 chr1 213955174 213955505 -28708848 - L1M4 LINE L1 -841 5305 5001 1705 156 3 55 chr1 213955505 213955813 -28708540 - AluJo SINE Alu -20 292 1 2366 236 104 26 chr1 213955813 213956209 -28708144 - L1M4 LINE L1 -1145 5001 4521 336 211 256 0 chr1 213956209 213956299 -28708054 + MER94 DNA DNA 22 134 0 237 349 0 0 chr1 213957265 213957331 -28707022 + tRNA-Ile-ATT tRNA tRNA 9 74 -3 264 242 32 0 chr1 213957751 213957813 -28706540 - L2 LINE L2 -5 3267 3204 292 317 67 0 chr1 213957819 213957923 -28706430 - L2 LINE L2 0 3313 3203 780 196 20 0 chr1 213957944 213958092 -28706261 - Charlie4 DNA MER1_type -10 1951 1801 1703 171 7 7 chr1 213958677 213958969 -28705384 - AluJb SINE Alu -10 302 11 297 0 0 0 chr1 213959007 213959040 -28705313 + (TG)n Simple_repeat Simple_repeat 2 34 0 1135 228 24 35 chr1 213959492 213959782 -28704571 - LTR9 LTR ERV1 0 612 326 2275 61 27 27 chr1 213960927 213961221 -28703132 - AluSq SINE Alu -19 294 1 1756 161 21 25 chr1 213961589 213961874 -28702479 + AluJb SINE Alu 1 284 -28 580 109 173 0 chr1 213962189 213962299 -28702054 + MIR SINE MIR 134 262 0 2076 147 3 0 chr1 213962884 213963184 -28701169 - AluSx SINE Alu -11 301 1 560 302 111 18 chr1 213963230 213963455 -28700898 - MIR SINE MIR -14 248 3 1300 140 0 5 chr1 213963467 213963660 -28700693 - AluY SINE Alu -14 297 106 219 69 0 0 chr1 213964106 213964135 -28700218 + (T)n Simple_repeat Simple_repeat 1 29 0 2439 81 3 0 chr1 213964182 213964489 -28699864 + AluSp SINE Alu 1 308 -5 775 289 23 43 chr1 213964809 213965065 -28699288 + MIR SINE MIR 2 252 -10 2232 111 0 13 chr1 213965272 213965408 -28698945 + AluSq SINE Alu 1 137 -176 2311 101 0 0 chr1 213965408 213965715 -28698638 + AluY SINE Alu 1 307 -4 2232 111 0 13 chr1 213965715 213965885 -28698468 + AluSq SINE Alu 137 303 -10 405 371 74 4 chr1 213966875 213967104 -28697249 + MIR SINE MIR 12 256 -6 31 82 0 0 chr1 213967273 213967346 -28697007 + AT_rich Low_complexity Low_complexity 1 73 0 310 280 45 38 chr1 213967514 213967703 -28696650 + MIR SINE MIR 36 220 -42 464 236 118 31 chr1 213967884 213968079 -28696274 + MLT1K LTR MaLR 131 342 -246 1598 260 79 42 chr1 213968234 213968927 -28695426 - HAL1b LINE L1 -547 801 83 1979 123 11 0 chr1 213968935 213969220 -28695133 + AluSx SINE Alu 1 288 -24 309 262 49 133 chr1 213970766 213970821 -28693532 + MLT1G-int LTR MaLR 1107 1165 -206 2147 123 0 7 chr1 213970821 213971130 -28693223 - AluSg SINE Alu -3 307 1 309 262 49 133 chr1 213971130 213971337 -28693016 + MLT1G-int LTR MaLR 1165 1347 -24 1593 232 132 109 chr1 213971358 213971935 -28692418 + MLT1G LTR MaLR 4 588 -2 763 138 0 14 chr1 213972877 213973022 -28691331 + (TTCC)n Simple_repeat Simple_repeat 4 146 0 316 135 0 19 chr1 213973022 213973074 -28691279 + (TC)n Simple_repeat Simple_repeat 1 51 0 1105 305 77 61 chr1 213973497 213974094 -28690259 + L1MD1 LINE L1 123 738 -5381 1955 158 3 0 chr1 213974094 213974392 -28689961 + AluSx SINE Alu 1 299 -13 1105 305 77 61 chr1 213974392 213974624 -28689729 + L1MD1 LINE L1 738 965 -5154 * 2090 205 98 68 chr1 213974620 213975148 -28689205 + L1MDa LINE L1 784 1295 -5245 2346 85 3 3 chr1 213975148 213975441 -28688912 + AluY SINE Alu 1 293 -18 2090 205 98 68 chr1 213975441 213975496 -28688857 + L1MDa LINE L1 1295 1347 -5193 2194 95 0 3 chr1 213975496 213975807 -28688546 + AluY SINE Alu 1 310 0 2090 205 98 68 chr1 213975807 213975927 -28688426 + L1MDa LINE L1 1347 1510 -5030 1714 151 81 11 chr1 213975926 213976298 -28688055 + L1MDa LINE L1 2223 2620 -3920 * 1405 218 57 93 chr1 213976293 213977152 -28687201 + L1MD1 LINE L1 925 6225 0 * 1637 186 0 14 chr1 213978581 213978872 -28685481 + AluJb SINE Alu 5 291 -21 1084 105 0 84 chr1 213979002 213979186 -28685167 + AluSp SINE Alu 137 305 -3 10165 31 15 0 chr1 213979186 213981122 -28683231 + L1PA3 LINE L1 4235 6155 0 181 265 20 0 chr1 213981446 213981495 -28682858 + MIR SINE MIR 88 137 -125 2253 79 4 4 chr1 213981687 213981991 -28682362 + AluY SINE Alu 1 304 0 835 124 33 0 chr1 213981997 213982118 -28682235 + AluSq/x SINE Alu 1 125 -187 2165 127 0 0 chr1 213982370 213982677 -28681676 + AluSx SINE Alu 1 307 -5 487 284 37 74 chr1 213982829 213983019 -28681334 + MIR SINE MIR 44 226 -36 2301 180 50 101 chr1 213983474 213983787 -28680566 - MER90 LTR ERV1 0 614 349 1541 154 4 15 chr1 213983787 213984046 -28680307 - AluJo SINE Alu -16 296 41 2301 180 50 101 chr1 213984046 213984375 -28679978 - MER90 LTR ERV1 -265 349 5 429 249 53 47 chr1 213984416 213984585 -28679768 + MIR SINE MIR 34 203 -59 2251 116 0 7 chr1 213984697 213985007 -28679346 - AluSx SINE Alu -4 308 1 201 39 0 0 chr1 213985340 213985366 -28678987 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 393 290 26 7 chr1 213985865 213986020 -28678333 - L1MC4a LINE L1 -1911 5897 5740 370 270 99 79 chr1 213986361 213986508 -28677845 - MIR SINE MIR 0 262 106 2210 110 3 0 chr1 213986508 213986798 -28677555 - AluSx SINE Alu -21 291 1 370 270 99 79 chr1 213986798 213986902 -28677451 - MIR SINE MIR -156 106 6 319 302 87 74 chr1 213988826 213989124 -28675229 + MLT1J LTR MaLR 210 511 0 1810 113 75 0 chr1 213989260 213989525 -28674828 - AluSx SINE Alu -7 305 21 444 163 0 0 chr1 213989989 213990075 -28674278 + CT-rich Low_complexity Low_complexity 1 86 0 675 189 72 27 chr1 213990226 213990448 -28673905 - L1M4 LINE L1 -1697 4449 4218 1988 141 3 10 chr1 213991408 213991699 -28672654 + AluSc SINE Alu 1 289 -20 264 298 155 11 chr1 213991901 213992082 -28672271 - L2 LINE L2 0 3313 3107 218 318 250 8 chr1 213992187 213992319 -28672034 - L2 LINE L2 -283 3030 2867 384 40 0 0 chr1 213992627 213992677 -28671676 + (TG)n Simple_repeat Simple_repeat 2 51 0 386 307 27 13 chr1 213992777 213992927 -28671426 - MARNA DNA Mariner -355 231 80 1748 176 0 10 chr1 213993742 213994038 -28670315 + AluJb SINE Alu 1 293 -19 1040 207 59 0 chr1 213994244 213994447 -28669906 + MER44D DNA MER2_type 2 216 -489 * 1504 181 29 18 chr1 213994444 213994473 -28669880 + MER44D DNA MER2_type 455 482 -2005 2467 42 26 3 chr1 213994473 213994780 -28669573 + AluYb8 SINE Alu 1 314 -4 1504 181 29 18 chr1 213994780 213995026 -28669327 + MER44D DNA MER2_type 482 605 0 441 240 56 8 chr1 213995191 213995316 -28669037 - MER63 DNA MER1_type -78 758 2 22 35 0 0 chr1 213995348 213995377 -28668976 + AT_rich Low_complexity Low_complexity 1 29 0 210 71 0 0 chr1 213995836 213995864 -28668489 + (T)n Simple_repeat Simple_repeat 1 28 0 396 288 18 68 chr1 213996566 213996729 -28667624 + MIR SINE MIR 105 259 -3 363 44 0 0 chr1 213997030 213997075 -28667278 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr1 213997373 213997393 -28666960 + (A)n Simple_repeat Simple_repeat 1 20 0 2206 122 0 3 chr1 213997396 213997699 -28666654 - AluSg SINE Alu -8 302 1 26 50 0 0 chr1 213998033 213998073 -28666280 + AT_rich Low_complexity Low_complexity 1 40 0 1647 178 3 46 chr1 214000037 214000363 -28663990 + AluJo SINE Alu 1 312 0 332 231 88 1 chr1 214000519 214000613 -28663740 - MIR SINE MIR -61 147 97 192 261 14 72 chr1 214000845 214000914 -28663439 + MIR3 SINE MIR 8 72 -136 * 241 270 195 11 chr1 214000881 214001055 -28663298 + MIR SINE MIR 38 243 -19 381 267 41 127 chr1 214001134 214001202 -28663151 + MIR SINE MIR 13 85 -177 2529 65 3 0 chr1 214001202 214001510 -28662843 - AluY SINE Alu -2 309 1 381 267 41 127 chr1 214001510 214001662 -28662691 + MIR SINE MIR 85 214 -48 212 204 0 41 chr1 214001675 214001724 -28662629 + CT-rich Low_complexity Low_complexity 1 47 0 303 296 38 45 chr1 214002365 214002497 -28661856 + L2 LINE L2 3142 3272 0 378 290 179 25 chr1 214004667 214004916 -28659437 - L1MC/D LINE L1 -2223 5562 5272 355 301 136 31 chr1 214005055 214005534 -28658819 - L1MC/D LINE L1 -1098 5048 4520 344 202 28 46 chr1 214005537 214005646 -28658707 + MER67C LTR ERV1 1 107 -603 1168 236 190 27 chr1 214005657 214006068 -28658285 - L2 LINE L2 -1018 2296 1819 287 208 0 0 chr1 214006068 214006116 -28658237 + L1MC4 LINE L1 7631 7678 -364 234 167 0 62 chr1 214006120 214006168 -28658185 + (CACCAT)n Simple_repeat Simple_repeat 1 45 0 718 222 82 5 chr1 214006186 214006393 -28657960 + L1MC4 LINE L1 7690 7912 -130 362 245 36 22 chr1 214006446 214006585 -28657768 + L1MC4 LINE L1 7902 8042 0 184 189 0 0 chr1 214006603 214006640 -28657713 - L2 LINE L2 -1484 1830 1794 1987 248 113 51 chr1 214006652 214007358 -28656995 - L2 LINE L2 -1749 1565 816 481 304 75 25 chr1 214007360 214007494 -28656859 - L1MC/D LINE L1 -2314 3832 3683 2524 71 0 0 chr1 214007494 214007805 -28656548 - AluY SINE Alu 0 311 1 481 304 75 25 chr1 214007805 214007871 -28656482 - L1MC/D LINE L1 -2463 3683 3622 26 64 0 0 chr1 214008235 214008282 -28656071 + AT_rich Low_complexity Low_complexity 1 47 0 693 199 44 22 chr1 214008339 214008475 -28655878 + FLAM_C SINE Alu 3 141 -2 779 325 81 25 chr1 214008650 214009303 -28655050 - L1MC/D LINE L1 -3282 2864 2175 1131 177 71 9 chr1 214009304 214009530 -28654823 - AluJb SINE Alu 0 312 73 629 308 142 9 chr1 214010889 214011214 -28653139 + LTR33 LTR ERVL 1 368 -153 947 255 160 34 chr1 214011436 214011817 -28652536 + LTR16A LTR ERVL 16 444 -6 850 188 65 7 chr1 214012205 214012359 -28651994 - FAM SINE Alu -12 163 1 4485 122 13 11 chr1 214013693 214014327 -28650026 - MER41B LTR ERV1 0 635 1 947 143 14 110 chr1 214014440 214014649 -28649704 + MER5A DNA MER1_type 1 189 0 219 36 0 0 chr1 214014680 214014708 -28649645 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 15694 62 5 0 chr1 214014808 214017484 -28646869 + L1PA6 LINE L1 3468 6147 -7 831 166 7 0 chr1 214017505 214017656 -28646697 - L1 LINE L1 -3806 2340 2189 2318 85 3 16 chr1 214017853 214018159 -28646194 - AluSx SINE Alu -6 306 5 224 120 20 0 chr1 214019841 214019891 -28644462 + A-rich Low_complexity Low_complexity 2 52 0 275 358 36 6 chr1 214020818 214020983 -28643370 + HERV16 LTR ERVL 1003 1172 -3824 985 334 26 56 chr1 214021075 214021733 -28642620 + HERV16 LTR ERVL 1301 2007 -2989 2129 108 0 7 chr1 214021733 214022014 -28642339 + AluSg SINE Alu 1 281 -29 396 0 0 0 chr1 214022014 214022058 -28642295 + (CA)n Simple_repeat Simple_repeat 1 44 0 2129 108 0 7 chr1 214022058 214022071 -28642282 + AluSg SINE Alu 281 293 -17 985 334 26 56 chr1 214022071 214022142 -28642211 + HERV16 LTR ERVL 2007 2079 -2917 684 286 62 0 chr1 214022155 214022333 -28642020 + HERV16 LTR ERVL 2192 2380 -3384 42954 38 25 2 chr1 214022333 214028379 -28635974 + L1PA3 LINE L1 8 6155 0 181 265 20 0 chr1 214028697 214028746 -28635607 + MIR SINE MIR 88 137 -125 2345 75 0 0 chr1 214028939 214029243 -28635110 + AluY SINE Alu 1 304 0 2126 127 10 3 chr1 214029249 214029548 -28634805 + AluSq SINE Alu 1 301 -12 1410 144 0 60 chr1 214029592 214029842 -28634511 - AluJo SINE Alu -77 235 1 2703 42 0 0 chr1 214030021 214030328 -28634025 + AluY SINE Alu 1 307 -4 832 233 6 12 chr1 214030333 214030496 -28633857 - AluJo SINE Alu -30 282 121 562 313 82 0 chr1 214030788 214030970 -28633383 - MIR SINE MIR -12 250 54 21 0 0 0 chr1 214031770 214031791 -28632562 + AT_rich Low_complexity Low_complexity 1 21 0 2253 98 0 22 chr1 214031895 214032212 -28632141 + AluY SINE Alu 1 310 -1 2343 57 4 0 chr1 214032244 214032570 -28631783 - AluY SINE Alu 0 327 1 2302 105 3 3 chr1 214032962 214033266 -28631087 + AluSx SINE Alu 1 304 -8 21 57 0 0 chr1 214033286 214033321 -28631032 + AT_rich Low_complexity Low_complexity 1 35 0 1025 138 12 6 chr1 214034722 214034882 -28629471 - FRAM SINE Alu -2 174 14 854 143 23 0 chr1 214035093 214035226 -28629127 + AluSq/x SINE Alu 1 136 -177 222 118 0 0 chr1 214035226 214035260 -28629093 + (A)n Simple_repeat Simple_repeat 1 34 0 1433 247 99 14 chr1 214038381 214038823 -28625530 + MLT2B1 LTR ERVL 1 480 -40 231 103 0 0 chr1 214038823 214038862 -28625491 + (TA)n Simple_repeat Simple_repeat 2 40 0 333 272 0 22 chr1 214038865 214038957 -28625396 + L1MC4 LINE L1 6614 6703 -1339 24 0 0 0 chr1 214039293 214039317 -28625036 + AT_rich Low_complexity Low_complexity 1 24 0 2340 87 3 0 chr1 214039457 214039755 -28624598 + AluY SINE Alu 1 299 -12 1839 138 17 0 chr1 214040090 214040388 -28623965 - AluSq SINE Alu -10 303 1 21 71 0 0 chr1 214040748 214040790 -28623563 + AT_rich Low_complexity Low_complexity 1 42 0 525 114 91 0 chr1 214040796 214040884 -28623469 - AluSc SINE Alu 0 309 214 565 135 45 0 chr1 214040895 214040984 -28623369 + FRAM SINE Alu 67 159 -17 331 236 0 0 chr1 214041086 214041158 -28623195 + MIR3 SINE MIR 131 202 -6 1864 146 3 3 chr1 214041752 214042046 -28622307 + AluSx SINE Alu 1 294 -18 2876 142 69 27 chr1 214042236 214042757 -28621596 - MER4E LTR ERV1 -26 753 211 1689 111 0 0 chr1 214042993 214043228 -28621125 - AluY SINE Alu -76 235 1 242 318 133 39 chr1 214043353 214043517 -28620836 + L2 LINE L2 1969 2116 -1198 848 143 0 15 chr1 214043517 214043650 -28620703 - FLAM_C SINE Alu 0 133 3 242 318 133 39 chr1 214043650 214043822 -28620531 + L2 LINE L2 2116 2337 -977 2318 84 3 0 chr1 214044010 214044319 -28620034 - AluSx SINE Alu -2 310 1 2139 91 30 7 chr1 214044332 214044629 -28619724 - AluSx SINE Alu -8 304 1 367 317 73 77 chr1 214044766 214044873 -28619480 + L2 LINE L2 2593 2699 -615 1686 156 0 47 chr1 214044873 214045044 -28619309 - AluJb SINE Alu -7 305 154 2255 105 0 0 chr1 214045044 214045348 -28619005 + AluSx SINE Alu 1 304 -8 1686 156 0 47 chr1 214045348 214045496 -28618857 - AluJb SINE Alu -158 154 1 367 317 73 77 chr1 214045496 214045647 -28618706 + L2 LINE L2 2699 2850 -464 516 271 152 76 chr1 214045719 214045787 -28618566 - L2 LINE L2 -1 3312 3251 1990 75 89 4 chr1 214045787 214046067 -28618286 - AluSq SINE Alu -9 304 1 516 271 152 76 chr1 214046067 214046445 -28617908 - L2 LINE L2 -62 3251 2832 847 119 156 6 chr1 214046566 214046726 -28617627 + L1MB8 LINE L1 5995 6178 0 2326 91 3 0 chr1 214046736 214047044 -28617309 + AluSx SINE Alu 1 309 -3 221 167 94 0 chr1 214047175 214047271 -28617082 + (TA)n Simple_repeat Simple_repeat 1 105 0 661 335 61 61 chr1 214047286 214047453 -28616900 + L2 LINE L2 2301 2467 -847 1744 137 44 7 chr1 214047453 214047746 -28616607 + AluSx SINE Alu 1 304 -8 661 335 61 61 chr1 214047746 214048101 -28616252 + L2 LINE L2 2466 2823 -491 1511 167 0 49 chr1 214048257 214048544 -28615809 - AluJo SINE Alu -23 289 17 2062 112 0 26 chr1 214048723 214049027 -28615326 - AluSx SINE Alu -16 296 1 216 0 0 0 chr1 214049104 214049128 -28615225 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1815 92 0 16 chr1 214049130 214049380 -28614973 - AluSx SINE Alu -31 281 36 799 206 39 0 chr1 214049394 214049549 -28614804 + AluJo SINE Alu 2 162 -150 22 0 0 0 chr1 214049650 214049672 -28614681 + AT_rich Low_complexity Low_complexity 1 22 0 1944 118 0 43 chr1 214049672 214049976 -28614377 + AluSx SINE Alu 5 295 -17 990 63 0 0 chr1 214050090 214050216 -28614137 + AluSg/x SINE Alu 176 301 -11 2135 90 20 0 chr1 214050432 214050733 -28613620 + AluSg SINE Alu 2 308 -2 386 322 70 44 chr1 214050921 214051093 -28613260 - L2 LINE L2 -977 2337 2152 848 143 0 15 chr1 214051093 214051226 -28613127 + FLAM_C SINE Alu 3 133 0 386 322 70 44 chr1 214051226 214051351 -28613002 - L2 LINE L2 -1162 2152 2032 1878 120 0 0 chr1 214051514 214051781 -28612572 + AluY SINE Alu 1 267 -44 2048 132 0 0 chr1 214052970 214053274 -28611079 - AluSx SINE Alu -8 304 1 1641 148 0 40 chr1 214053283 214053618 -28610735 - AluJo SINE Alu 0 312 2 269 278 16 0 chr1 214054896 214055003 -28609350 + Charlie5 DNA MER1_type 1 63 -2549 1504 156 109 0 chr1 214055022 214055297 -28609056 - AluJo SINE Alu -7 305 1 2362 91 0 0 chr1 214055371 214055680 -28608673 - AluSx SINE Alu -3 309 1 216 221 26 78 chr1 214055683 214055760 -28608593 - MER5A DNA MER1_type -115 74 2 24 0 0 0 chr1 214056012 214056036 -28608317 + AT_rich Low_complexity Low_complexity 1 24 0 2235 82 3 7 chr1 214056182 214056486 -28607867 + AluSg SINE Alu 6 308 -2 672 244 58 56 chr1 214056490 214056704 -28607649 + MER20 DNA MER1_type 2 218 -1 189 0 0 0 chr1 214056779 214056800 -28607553 + (A)n Simple_repeat Simple_repeat 1 21 0 2153 92 3 16 chr1 214057536 214057850 -28606503 + AluSx SINE Alu 1 310 -2 2150 94 3 14 chr1 214057862 214058159 -28606194 + AluSx SINE Alu 1 294 -18 2920 142 67 27 chr1 214058349 214058871 -28605482 - MER4E LTR ERV1 -26 753 211 1491 98 0 0 chr1 214059025 214059228 -28605125 + AluSg/x SINE Alu 103 305 -7 468 304 97 25 chr1 214059262 214059499 -28604854 - L2 LINE L2 -823 2491 2238 28 61 0 0 chr1 214059709 214059758 -28604595 + AT_rich Low_complexity Low_complexity 1 49 0 4705 23 0 0 chr1 214059814 214060345 -28604008 - L1PA3 LINE L1 0 6155 5625 2320 63 0 0 chr1 214060738 214061025 -28603328 + AluY SINE Alu 1 287 -24 684 277 71 21 chr1 214061681 214061919 -28602434 - MIR SINE MIR -11 251 2 1178 229 78 55 chr1 214062009 214062354 -28601999 - LTR16A LTR ERVL -1 449 97 2195 101 0 7 chr1 214062472 214062779 -28601574 - AluSg SINE Alu -5 305 1 709 232 121 0 chr1 214063258 214063448 -28600905 + MIR SINE MIR 49 261 -1 22 0 0 0 chr1 214064634 214064656 -28599697 + AT_rich Low_complexity Low_complexity 1 22 0 180 284 86 25 chr1 214064700 214064781 -28599572 + MER5B DNA MER1_type 56 141 -37 207 0 0 0 chr1 214064813 214064836 -28599517 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 225 178 44 0 chr1 214064849 214064894 -28599459 + MER5B DNA MER1_type 131 177 -1 545 243 64 40 chr1 214065447 214065620 -28598733 + MER5A DNA MER1_type 1 177 -12 211 182 0 0 chr1 214065666 214065699 -28598654 + (CA)n Simple_repeat Simple_repeat 1 33 0 2065 131 0 0 chr1 214065855 214066153 -28598200 - AluSg SINE Alu -12 298 1 252 0 0 0 chr1 214066341 214066369 -28597984 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 224 282 128 0 chr1 214066406 214066484 -28597869 + MIR SINE MIR 36 123 -85 203 333 34 20 chr1 214066733 214066880 -28597473 + C-rich Low_complexity Low_complexity 1 149 0 195 296 11 45 chr1 214067358 214067446 -28596907 - MIR SINE MIR 0 262 178 180 97 0 0 chr1 214068350 214068381 -28595972 + (T)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chr1 214070447 214070473 -28593880 + GC_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 214070559 214070584 -28593769 + GC_rich Low_complexity Low_complexity 1 25 0 985 276 86 99 chr1 214070932 214071569 -28592784 + L3 LINE CR1 336 964 -613 1240 107 0 0 chr1 214071580 214071788 -28592565 - AluSp SINE Alu 0 337 130 2269 110 0 0 chr1 214071791 214072101 -28592252 - AluSx SINE Alu -2 310 1 1042 146 0 6 chr1 214072101 214072272 -28592081 + AluJo/FRAM SINE Alu 136 305 -7 2156 90 30 7 chr1 214072516 214072815 -28591538 + AluSx SINE Alu 1 306 -6 2295 87 3 0 chr1 214072828 214073137 -28591216 + AluSx SINE Alu 1 310 -2 386 322 70 44 chr1 214073325 214073497 -28590856 - L2 LINE L2 -977 2337 2152 848 143 0 15 chr1 214073497 214073630 -28590723 + FLAM_C SINE Alu 3 133 0 386 322 70 44 chr1 214073630 214073755 -28590598 - L2 LINE L2 -1162 2152 2032 1992 122 3 0 chr1 214073918 214074205 -28590148 + AluY SINE Alu 1 288 -23 1076 118 0 0 chr1 214074219 214074395 -28589958 + AluSg/x SINE Alu 128 303 0 1342 93 20 60 chr1 214074395 214074643 -28589710 + L1 LINE L1 4580 4817 -1329 1657 78 137 0 chr1 214075137 214075393 -28588960 + AluSp SINE Alu 1 291 -22 858 209 0 7 chr1 214075393 214075546 -28588807 - AluJb SINE Alu -30 282 131 1207 49 0 0 chr1 214075562 214075706 -28588647 + AluY SINE Alu 1 144 -167 2176 86 3 0 chr1 214075706 214075998 -28588355 + AluSx SINE Alu 1 293 -19 229 318 206 18 chr1 214076495 214076825 -28587528 + L2 LINE L2 2405 2796 -518 381 226 0 89 chr1 214077013 214077137 -28587216 + L2 LINE L2 3201 3313 0 851 243 92 0 chr1 214077250 214077501 -28586852 - MER58 DNA MER1_type -67 274 1 30 27 0 0 chr1 214077507 214077544 -28586809 + AT_rich Low_complexity Low_complexity 1 37 0 1990 107 11 0 chr1 214077544 214077825 -28586528 - AluSx SINE Alu -28 284 1 269 241 17 0 chr1 214077871 214077929 -28586424 - FLAM_A SINE Alu -72 60 2 1544 110 27 104 chr1 214077932 214078260 -28586093 - AluYb8 SINE Alu -15 303 1 201 140 53 35 chr1 214081017 214081074 -28583279 + (CCCCAG)n Simple_repeat Simple_repeat 3 60 0 2312 81 0 3 chr1 214082909 214083219 -28581134 - AluY SINE Alu -2 309 1 599 224 0 9 chr1 214083356 214083472 -28580881 + MER8 DNA MER2_type 2 116 -123 24 0 0 0 chr1 214083501 214083525 -28580828 + AT_rich Low_complexity Low_complexity 1 24 0 488 150 38 0 chr1 214083558 214083638 -28580715 + MER8 DNA MER2_type 157 239 0 2099 80 45 0 chr1 214083659 214083945 -28580408 + AluY SINE Alu 1 299 -12 182 174 22 0 chr1 214084135 214084181 -28580172 + C-rich Low_complexity Low_complexity 1 47 0 240 359 88 36 chr1 214084496 214084688 -28579665 - MLT1K LTR MaLR -324 264 63 2154 83 0 42 chr1 214084692 214085005 -28579348 - AluY SINE Alu -11 300 1 643 308 201 3 chr1 214085105 214085449 -28578904 + L2 LINE L2 2889 3300 -13 21 0 0 0 chr1 214085619 214085640 -28578713 + AT_rich Low_complexity Low_complexity 1 21 0 2069 113 3 7 chr1 214085749 214086049 -28578304 + AluSg SINE Alu 1 299 -11 242 213 49 0 chr1 214086059 214086120 -28578233 + MLT1F1 LTR MaLR 371 434 -133 643 255 25 13 chr1 214086363 214086520 -28577833 + Charlie1 DNA MER1_type 2 160 -2601 * 842 153 170 4 chr1 214086517 214086752 -28577601 + Charlie1 DNA MER1_type 2460 2733 -28 1852 113 7 4 chr1 214086753 214087027 -28577326 + AluSx SINE Alu 1 275 -37 852 150 20 0 chr1 214087413 214087560 -28576793 - AluSg/x SINE Alu -3 307 158 324 263 17 65 chr1 214087672 214087839 -28576514 - L1MC4 LINE L1 -1137 6704 6543 25 0 0 0 chr1 214087839 214087864 -28576489 + AT_rich Low_complexity Low_complexity 1 25 0 1018 94 0 11 chr1 214087864 214088045 -28576308 + (TA)n Simple_repeat Simple_repeat 2 180 0 321 87 22 0 chr1 214088068 214088114 -28576239 + MLT2C2 LTR ERVL 416 462 -2 1123 229 195 82 chr1 214088263 214088953 -28575400 - L2 LINE L2 0 3313 2579 439 195 0 0 chr1 214088974 214089051 -28575302 - MER45A DNA AcHobo 0 178 102 1758 158 7 0 chr1 214089052 214089344 -28575009 - AluSx SINE Alu -18 294 1 1337 218 0 18 chr1 214089362 214089647 -28574706 + AluJo SINE Alu 1 280 -32 748 249 11 23 chr1 214089673 214089850 -28574503 + U3 snRNA snRNA 43 217 0 194 0 39 0 chr1 214089858 214089884 -28574469 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3129 164 27 17 chr1 214089884 214090486 -28573867 + L1MB2 LINE L1 5554 6161 -10 523 138 181 0 chr1 214090499 214090593 -28573760 - MER45A DNA AcHobo -63 115 5 2680 232 193 25 chr1 214090606 214090687 -28573666 - L2 LINE L2 -780 2534 2468 1945 141 7 10 chr1 214090687 214090991 -28573362 + AluJb SINE Alu 1 303 -9 2680 232 193 25 chr1 214090991 214091999 -28572354 - L2 LINE L2 -846 2468 1262 29 0 0 0 chr1 214092149 214092178 -28572175 + AT_rich Low_complexity Low_complexity 1 29 0 211 197 258 15 chr1 214092556 214092622 -28571731 + L2 LINE L2 3225 3306 -7 213 271 220 8 chr1 214093631 214093749 -28570604 - MIR SINE MIR -4 258 116 330 300 10 0 chr1 214093991 214094091 -28570262 + L2 LINE L2 2924 3024 -248 207 0 0 0 chr1 214094101 214094124 -28570229 + (T)n Simple_repeat Simple_repeat 1 23 0 370 330 133 37 chr1 214094499 214095041 -28569312 - L2 LINE L2 -674 2640 2047 2062 130 0 3 chr1 214096814 214097107 -28567246 - AluSx SINE Alu -20 292 1 2032 125 7 0 chr1 214097483 214097778 -28566575 + AluSq SINE Alu 1 297 -16 231 312 86 0 chr1 214097873 214097966 -28566387 - MIR3 SINE MIR -15 193 93 214 186 21 27 chr1 214098771 214098927 -28565426 + (TA)n Simple_repeat Simple_repeat 1 155 0 623 199 89 7 chr1 214099772 214099918 -28564435 + MER5B DNA MER1_type 5 162 -16 852 209 23 40 chr1 214100825 214100926 -28563427 - MER5A DNA MER1_type -14 175 77 1969 146 10 3 chr1 214100926 214101228 -28563125 - AluSq SINE Alu -9 304 1 852 209 23 40 chr1 214101228 214101303 -28563050 - MER5A DNA MER1_type -112 77 2 211 314 71 0 chr1 214101432 214101502 -28562851 + L2 LINE L2 3196 3270 -2 194 330 126 65 chr1 214101724 214101954 -28562399 - L2 LINE L2 -2 3270 3027 538 224 84 0 chr1 214101977 214102120 -28562233 + L1MC4 LINE L1 7516 7670 -372 2223 245 40 30 chr1 214102303 214102415 -28561938 + L1MC4 LINE L1 6460 6569 -1473 2123 128 0 0 chr1 214102415 214102719 -28561634 - AluSq SINE Alu -7 306 3 2223 245 40 30 chr1 214102719 214103203 -28561150 + L1MC4 LINE L1 6569 7062 -980 664 266 75 60 chr1 214103246 214103580 -28560773 + L1MC4 LINE L1 7565 7903 -139 25 0 0 0 chr1 214105929 214105954 -28558399 + AT_rich Low_complexity Low_complexity 1 25 0 1005 163 56 6 chr1 214105957 214106135 -28558218 - AluJo SINE Alu -125 187 1 1910 154 7 0 chr1 214107887 214108179 -28556174 - AluJb SINE Alu -18 294 1 22 56 0 0 chr1 214108526 214108562 -28555791 + AT_rich Low_complexity Low_complexity 1 36 0 308 310 57 32 chr1 214108755 214108913 -28555440 - MIR SINE MIR -35 227 66 318 342 53 46 chr1 214109200 214109352 -28555001 + MIR SINE MIR 62 214 -48 26 0 0 0 chr1 214109390 214109416 -28554937 + AT_rich Low_complexity Low_complexity 1 26 0 2191 107 0 3 chr1 214110591 214110889 -28553464 + AluSx SINE Alu 3 299 -13 1697 174 10 23 chr1 214111396 214111700 -28552653 - AluJo SINE Alu -12 300 1 2284 99 10 13 chr1 214111739 214112051 -28552302 + AluSp SINE Alu 2 312 -1 1895 142 6 39 chr1 214112371 214112682 -28551671 - AluSx SINE Alu -11 301 1 689 182 0 0 chr1 214113230 214113340 -28551013 - Tigger3(Golem) DNA MER2_type -1 3028 2919 474 190 13 0 chr1 214113455 214113534 -28550819 - Tigger3(Golem) DNA MER2_type -2949 80 1 276 30 0 0 chr1 214113757 214113790 -28550563 + (TG)n Simple_repeat Simple_repeat 2 34 0 517 211 0 0 chr1 214114494 214114598 -28549755 - U13 snRNA snRNA 0 104 1 888 189 100 0 chr1 214114762 214114952 -28549401 - MER3 DNA MER1_type 0 209 1 205 354 47 55 chr1 214115403 214115530 -28548823 - L2 LINE L2 -206 3066 2941 546 256 222 10 chr1 214117409 214117612 -28546741 - MIR SINE MIR -14 248 3 21 0 0 0 chr1 214118209 214118230 -28546123 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 214119373 214119404 -28544949 + AT_rich Low_complexity Low_complexity 1 31 0 920 157 69 0 chr1 214119467 214119626 -28544727 - MER58B DNA MER1_type -1 340 171 2107 81 42 14 chr1 214119626 214119910 -28544443 + AluSx SINE Alu 1 292 -20 1702 187 21 0 chr1 214119934 214120223 -28544130 + AluJb SINE Alu 1 295 -17 2570 166 44 4 chr1 214121028 214121479 -28542874 + MER6A DNA MER2_type -7 461 -144 248 242 0 0 chr1 214121495 214121561 -28542792 + A-rich Low_complexity Low_complexity 1 66 0 663 131 105 72 chr1 214121565 214121616 -28542737 + MER6A DNA MER2_type 447 495 -370 2272 105 7 7 chr1 214121616 214121921 -28542432 - AluY SINE Alu -6 305 1 663 131 105 72 chr1 214121921 214122022 -28542331 + MER6A DNA MER2_type 495 604 -1 583 100 0 0 chr1 214122585 214122665 -28541688 - MADE1 DNA Mariner 0 80 1 730 244 39 6 chr1 214123366 214123546 -28540807 + MER5A DNA MER1_type 1 186 -3 230 186 23 0 chr1 214123804 214123847 -28540506 + MIR SINE MIR 217 260 -2 383 293 40 0 chr1 214124459 214124609 -28539744 + L1ME LINE L1 5635 5790 -331 436 272 130 11 chr1 214124623 214124807 -28539546 + MIR SINE MIR 57 262 0 324 314 78 37 chr1 214125090 214125281 -28539072 + L2 LINE L2 2140 2338 -976 2118 128 0 0 chr1 214125517 214125813 -28538540 - AluSc SINE Alu -13 296 1 1021 253 49 89 chr1 214126307 214126663 -28537690 + MLT1G LTR MaLR 10 337 -205 2116 132 0 7 chr1 214126663 214126966 -28537387 + AluSx SINE Alu 1 301 -11 1021 253 49 89 chr1 214126966 214127037 -28537316 + MLT1G LTR MaLR 337 409 -133 642 255 25 13 chr1 214127280 214127437 -28536916 + Charlie1 DNA MER1_type 2 160 -2601 * 844 153 170 4 chr1 214127434 214127669 -28536684 + Charlie1 DNA MER1_type 2460 2733 -28 1940 113 7 4 chr1 214127670 214127944 -28536409 + AluSx SINE Alu 1 275 -37 1576 146 116 4 chr1 214128330 214128605 -28535748 - AluSx SINE Alu -3 309 4 2043 127 3 3 chr1 214128718 214129017 -28535336 + AluSx SINE Alu 1 299 -13 2129 125 3 10 chr1 214129019 214129330 -28535023 + AluSq SINE Alu 1 309 -4 24 0 0 0 chr1 214129526 214129550 -28534803 + AT_rich Low_complexity Low_complexity 1 24 0 1482 159 91 11 chr1 214129554 214129818 -28534535 + AluJb SINE Alu 5 289 -23 2035 177 116 2 chr1 214129872 214130625 -28533728 - L1M4 LINE L1 -440 5738 4900 321 362 59 39 chr1 214130945 214131007 -28533346 - L2 LINE L2 -503 2811 2752 1597 185 7 21 chr1 214131007 214131294 -28533059 - AluJo SINE Alu -17 295 13 321 362 59 39 chr1 214131294 214131694 -28532659 - L2 LINE L2 -562 2752 2250 413 250 93 9 chr1 214132684 214132792 -28531561 + MIR SINE MIR 51 167 -95 1018 126 0 0 chr1 214132795 214132938 -28531415 - FLAM_C SINE Alu 0 143 1 27 0 0 0 chr1 214133000 214133027 -28531326 + AT_rich Low_complexity Low_complexity 1 27 0 40 37 0 0 chr1 214133350 214133404 -28530949 + AT_rich Low_complexity Low_complexity 1 54 0 348 85 0 0 chr1 214134752 214134799 -28529554 + Alu SINE Alu 2 48 -254 2157 104 40 0 chr1 214134807 214135104 -28529249 + AluY SINE Alu 2 310 -1 1580 179 55 11 chr1 214135660 214135934 -28528419 - AluJo SINE Alu -16 296 11 309 77 0 0 chr1 214136415 214136454 -28527899 + AluJb SINE Alu 84 122 -180 1129 170 14 18 chr1 214136455 214136673 -28527680 + AluJb SINE Alu 84 300 -12 1981 141 10 10 chr1 214136780 214137084 -28527269 + AluSx SINE Alu 1 304 -8 2246 104 0 0 chr1 214137500 214137807 -28526546 + AluSc SINE Alu 1 307 -2 271 216 27 54 chr1 214138609 214138683 -28525670 + L2 LINE L2 3242 3313 0 441 270 0 37 chr1 214140993 214141120 -28523233 + HAL1 LINE L1 12 133 -2374 2385 87 0 0 chr1 214141120 214141419 -28522934 + AluSx SINE Alu 1 299 -13 441 270 0 37 chr1 214141419 214141454 -28522899 + HAL1 LINE L1 133 168 -2339 2301 216 131 74 chr1 214141462 214142257 -28522096 + HAL1 LINE L1 385 1248 -1259 2159 126 0 3 chr1 214142257 214142567 -28521786 + AluSg1 SINE Alu 1 309 0 2301 216 131 74 chr1 214142567 214142746 -28521607 + HAL1 LINE L1 1248 1415 -1092 637 262 39 102 chr1 214142743 214143125 -28521228 + HAL1 LINE L1 1625 1982 -525 * 2186 125 0 0 chr1 214143142 214143445 -28520908 + AluSg SINE Alu 5 307 -3 23 33 0 0 chr1 214143468 214143498 -28520855 + AT_rich Low_complexity Low_complexity 1 30 0 816 198 55 23 chr1 214143620 214143837 -28520516 + AluSg/x SINE Alu 81 304 -5 1680 170 0 43 chr1 214143875 214144175 -28520178 - AluJb SINE Alu -10 302 16 430 286 53 65 chr1 214144292 214144409 -28519944 + HAL1 LINE L1 2226 2343 -164 2100 121 7 0 chr1 214144409 214144699 -28519654 + AluSg SINE Alu 1 292 -18 430 286 53 65 chr1 214144699 214144826 -28519527 + HAL1 LINE L1 2343 2467 -40 29 47 0 0 chr1 214146304 214146347 -28518006 + AT_rich Low_complexity Low_complexity 1 43 0 232 65 0 0 chr1 214148061 214148092 -28516261 - Alu SINE Alu -9 291 261 279 0 0 0 chr1 214148303 214148334 -28516019 + (TA)n Simple_repeat Simple_repeat 1 31 0 1848 125 34 24 chr1 214148347 214148644 -28515709 - AluSx SINE Alu -12 300 1 1659 190 0 32 chr1 214148649 214148960 -28515393 - AluJo SINE Alu -11 301 1 28 29 0 0 chr1 214149283 214149318 -28515035 + AT_rich Low_complexity Low_complexity 1 35 0 309 289 64 13 chr1 214149569 214149725 -28514628 - MIR3 SINE MIR -7 201 38 2191 107 0 0 chr1 214151332 214151636 -28512717 + AluSg SINE Alu 2 305 0 211 294 0 20 chr1 214153203 214153254 -28511099 + MIR SINE MIR 98 147 -61 2479 68 0 3 chr1 214153255 214153551 -28510802 - AluSc SINE Alu -14 295 1 527 93 13 0 chr1 214153574 214153649 -28510704 - L1PA15 LINE L1 -7 6158 6083 2071 77 0 25 chr1 214153970 214154244 -28510109 - AluY SINE Alu 0 311 45 40 59 0 0 chr1 214154333 214154401 -28509952 + AT_rich Low_complexity Low_complexity 1 68 0 2338 82 7 10 chr1 214154468 214154601 -28509752 + AluSg SINE Alu 1 133 -177 2392 67 0 13 chr1 214154601 214154899 -28509454 + AluY SINE Alu 1 294 -17 2338 82 7 10 chr1 214154899 214155070 -28509283 + AluSg SINE Alu 133 304 -6 952 114 0 0 chr1 214155162 214155293 -28509060 + AluSp SINE Alu 2 132 -181 198 0 0 0 chr1 214155293 214155315 -28509038 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1314 170 45 0 chr1 214155338 214155585 -28508768 + L1MC3 LINE L1 7528 7785 0 237 65 0 0 chr1 214155913 214155944 -28508409 + (CA)n Simple_repeat Simple_repeat 2 32 0 490 239 78 30 chr1 214156058 214156225 -28508128 + MIR SINE MIR 83 257 -5 185 353 82 65 chr1 214158006 214158265 -28506088 - L2 LINE L2 -37 3235 2965 2256 108 3 0 chr1 214158265 214158560 -28505793 + AluSx SINE Alu 2 297 -15 185 353 82 65 chr1 214158560 214158714 -28505639 - L2 LINE L2 -307 2965 2815 212 362 138 5 chr1 214158828 214159038 -28505315 - L2 LINE L2 -672 2642 2405 2087 67 0 37 chr1 214159535 214159805 -28504548 - AluY SINE Alu -19 292 33 331 282 0 0 chr1 214160137 214160208 -28504145 - MER2 DNA MER2_type 0 345 275 591 151 15 180 chr1 214160232 214160451 -28503902 + L1MA10 LINE L1 5986 6333 -1 210 191 0 0 chr1 214160839 214160886 -28503467 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1857 161 74 6 chr1 214161582 214161906 -28502447 + MER7A DNA MER2_type 3 346 0 434 274 45 0 chr1 214161983 214162107 -28502246 + MIR3 SINE MIR 76 205 -3 2159 115 0 3 chr1 214162604 214162899 -28501454 - AluSq SINE Alu -19 294 1 1930 154 48 0 chr1 214162994 214163287 -28501066 + AluSx SINE Alu 1 307 -5 2206 120 0 0 chr1 214163365 214163665 -28500688 + AluSx SINE Alu 1 300 -12 4360 116 14 2 chr1 214163669 214164289 -28500064 + L1PA14 LINE L1 5532 6159 -2 944 224 119 55 chr1 214164317 214164495 -28499858 + HAL1 LINE L1 995 1160 -1347 986 202 6 6 chr1 214164495 214164668 -28499685 + FAM SINE Alu 1 173 -2 2429 97 0 0 chr1 214164670 214164979 -28499374 + AluSx SINE Alu 1 309 -3 944 224 119 55 chr1 214164979 214165266 -28499087 + HAL1 LINE L1 1160 1493 -1014 534 241 59 27 chr1 214165274 214165461 -28498892 + HAL1 LINE L1 2020 2212 -295 2387 98 3 0 chr1 214165524 214165830 -28498523 - AluSp SINE Alu -6 307 1 1831 124 57 13 chr1 214165833 214166132 -28498221 - AluJo SINE Alu 0 312 1 804 218 137 18 chr1 214166223 214166620 -28497733 - LTR48 LTR ERV1 -301 486 10 574 223 0 0 chr1 214166721 214166824 -28497529 - LTR48-int LTR ERV1 -164 6167 6065 2273 102 0 0 chr1 214166975 214167270 -28497083 - AluY SINE Alu -15 296 2 1429 175 54 30 chr1 214167302 214167599 -28496754 + AluJo SINE Alu 1 304 -8 2330 91 3 0 chr1 214168022 214168318 -28496035 + AluSp SINE Alu 1 297 -16 305 298 36 109 chr1 214168416 214168517 -28495836 - MIR SINE MIR -18 244 137 1765 165 7 4 chr1 214168517 214168796 -28495557 + AluJb SINE Alu 16 295 -17 305 298 36 109 chr1 214168796 214168942 -28495411 - MIR SINE MIR -125 137 15 2302 100 3 0 chr1 214169012 214169302 -28495051 + AluSp SINE Alu 1 291 -22 544 201 234 32 chr1 214169307 214169461 -28494892 + L1MC4 LINE L1 6762 6946 -1096 1369 115 0 5 chr1 214169462 214169654 -28494699 + AluSg/x SINE Alu 112 302 -10 2101 137 3 6 chr1 214169654 214169968 -28494385 + AluSq SINE Alu 1 313 0 257 161 81 0 chr1 214169970 214170032 -28494321 + L1MC4 LINE L1 6943 7009 -1033 * 1089 236 50 100 chr1 214170024 214170093 -28494260 + L1ME1 LINE L1 5759 5830 -348 2328 90 0 3 chr1 214170093 214170394 -28493959 + AluSc SINE Alu 1 300 -9 1089 236 50 100 chr1 214170394 214170765 -28493588 + L1ME1 LINE L1 5830 6177 -1 1693 275 143 19 chr1 214170837 214171564 -28492789 + L1MC4 LINE L1 7085 7901 -141 1379 165 4 4 chr1 214171898 214172128 -28492225 + AluSx SINE Alu 1 230 -82 234 0 0 0 chr1 214172137 214172163 -28492190 + (A)n Simple_repeat Simple_repeat 1 26 0 509 242 75 32 chr1 214172177 214172363 -28491990 - MIR SINE MIR -54 208 15 1906 128 10 30 chr1 214172670 214172974 -28491379 + AluJb SINE Alu 1 298 -14 230 267 20 20 chr1 214173938 214174039 -28490314 + (CCG)n Simple_repeat Simple_repeat 2 102 0 2418 80 3 0 chr1 214174451 214174752 -28489601 + AluSx SINE Alu 1 302 -10 2085 95 0 36 chr1 214174762 214175068 -28489285 + AluSg SINE Alu 1 295 -15 764 209 17 23 chr1 214175080 214175252 -28489101 + FAM SINE Alu 5 175 0 2289 113 0 3 chr1 214175564 214175875 -28488478 + AluSp SINE Alu 1 310 -3 333 259 60 72 chr1 214176001 214176167 -28488186 - L1M4 LINE L1 -1955 4191 4028 2064 105 7 7 chr1 214176171 214176465 -28487888 + AluSq SINE Alu 1 294 -19 1995 145 3 7 chr1 214176486 214176789 -28487564 + AluSq SINE Alu 1 302 -11 791 265 0 0 chr1 214176802 214176968 -28487385 + FRAM SINE Alu 1 166 0 2228 110 3 0 chr1 214177015 214177314 -28487039 - AluSq SINE Alu -13 300 1 2083 115 0 43 chr1 214177424 214177728 -28486625 - AluSx SINE Alu -17 295 5 1534 171 24 0 chr1 214177758 214178010 -28486343 - AluJo SINE Alu -54 258 1 1908 92 0 16 chr1 214178023 214178299 -28486054 + AluSx SINE Alu 36 307 0 2072 125 10 3 chr1 214178376 214178671 -28485682 + AluSx SINE Alu 1 297 -15 2296 99 3 0 chr1 214179504 214179807 -28484546 + AluSq SINE Alu 1 304 -9 1914 108 66 3 chr1 214180188 214180475 -28483878 - AluY SINE Alu -6 305 1 1075 84 0 0 chr1 214180479 214180610 -28483743 - AluSc SINE Alu -178 131 1 474 206 0 11 chr1 214180610 214180702 -28483651 - L1M4 LINE L1 -1226 4920 4830 2451 76 0 0 chr1 214180705 214181007 -28483346 + AluSg SINE Alu 2 303 -7 1501 88 5 0 chr1 214181185 214181377 -28482976 - AluSx SINE Alu -17 293 101 2446 47 0 13 chr1 214181377 214181677 -28482676 - AluY SINE Alu -15 296 1 902 110 0 0 chr1 214181677 214181795 -28482558 - AluSx SINE Alu -195 118 1 185 243 324 0 chr1 214181915 214182026 -28482327 + MIR3 SINE MIR 36 182 -26 765 212 33 0 chr1 214182094 214182245 -28482108 + AluSx SINE Alu 5 160 -152 1075 157 0 0 chr1 214182346 214182505 -28481848 - AluJb SINE Alu -153 159 1 2257 100 0 16 chr1 214183173 214183482 -28480871 - AluSg SINE Alu -6 304 1 245 337 257 0 chr1 214184147 214184334 -28480019 - L3 LINE CR1 -23 1554 1320 2163 119 3 3 chr1 214184390 214184684 -28479669 - AluSc SINE Alu -15 294 1 601 265 186 0 chr1 214184705 214184920 -28479433 + Charlie7 DNA MER1_type 102 356 -2256 2175 103 0 0 chr1 214184928 214185232 -28479121 - AluSg SINE Alu 0 304 1 437 204 0 48 chr1 214185239 214185342 -28479011 + Charlie7 DNA MER1_type 1484 1581 -1031 354 194 312 0 chr1 214185344 214185437 -28478916 + L2 LINE L2 3187 3308 -5 202 316 189 33 chr1 214185519 214185763 -28478590 - L3 LINE CR1 -300 1277 996 2202 94 7 39 chr1 214185977 214186112 -28478241 + AluSp SINE Alu 1 139 -198 2236 111 3 7 chr1 214186112 214186419 -28477934 + AluY SINE Alu 3 308 -3 2202 94 7 39 chr1 214186419 214186630 -28477723 + AluSp SINE Alu 139 337 0 919 276 86 99 chr1 214186641 214187278 -28477075 - L3 LINE CR1 -613 964 336 1040 167 137 20 chr1 214187278 214187482 -28476871 - AluJo SINE Alu -3 309 82 1508 169 10 51 chr1 214187800 214188096 -28476257 + AluJo SINE Alu 16 299 -13 25 0 0 0 chr1 214188187 214188212 -28476141 + AT_rich Low_complexity Low_complexity 1 25 0 225 98 0 92 chr1 214188215 214188379 -28475974 + (TAA)n Simple_repeat Simple_repeat 3 151 0 43 0 0 0 chr1 214188379 214188422 -28475931 + AT_rich Low_complexity Low_complexity 1 43 0 274 96 68 0 chr1 214188425 214188498 -28475855 + (TA)n Simple_repeat Simple_repeat 1 78 0 2071 125 3 3 chr1 214188498 214188785 -28475568 - AluSg SINE Alu -23 287 1 2483 70 0 3 chr1 214189141 214189442 -28474911 - AluSg SINE Alu -10 300 1 1828 92 77 146 chr1 214190243 214190646 -28473707 - THE1C LTR MaLR 0 375 1 1678 99 114 0 chr1 214190860 214191122 -28473231 - AluSg1 SINE Alu -17 292 1 2342 97 0 0 chr1 214191150 214191449 -28472904 + AluSx SINE Alu 1 299 -13 991 236 153 47 chr1 214191474 214191880 -28472473 + LTR16A LTR ERVL 2 450 0 225 0 0 0 chr1 214191953 214191978 -28472375 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 342 0 0 0 chr1 214191977 214192015 -28472338 + (GA)n Simple_repeat Simple_repeat 2 39 0 211 176 40 27 chr1 214192015 214192089 -28472264 + (TA)n Simple_repeat Simple_repeat 1 75 0 2263 99 0 0 chr1 214192090 214192374 -28471979 - AluSx SINE Alu -28 284 1 1804 131 4 0 chr1 214192479 214192738 -28471615 - AluSx SINE Alu -11 301 42 437 91 30 0 chr1 214192850 214192916 -28471437 + Alu SINE Alu 1 68 -243 1455 146 12 16 chr1 214193016 214193269 -28471084 - AluSq SINE Alu -61 252 1 378 0 0 0 chr1 214193379 214193421 -28470932 + (TA)n Simple_repeat Simple_repeat 2 43 0 301 196 0 0 chr1 214193421 214193477 -28470876 - L1MC4 LINE L1 -1339 6703 6648 2129 91 0 34 chr1 214193478 214193774 -28470579 - AluSg SINE Alu -24 286 1 356 271 117 40 chr1 214194002 214194084 -28470269 - L1MC4 LINE L1 -604 5560 5486 2131 85 10 33 chr1 214194084 214194390 -28469963 - AluSx SINE Alu -13 299 1 356 271 117 40 chr1 214194390 214194439 -28469914 - L1MC4 LINE L1 -678 5486 5442 1505 98 5 0 chr1 214194439 214194632 -28469721 - AluSp SINE Alu -119 194 1 356 271 117 40 chr1 214194632 214194833 -28469520 - L1MC4 LINE L1 -722 5442 5333 1631 209 0 6 chr1 214194833 214195144 -28469209 - AluJo SINE Alu -3 309 1 356 271 117 40 chr1 214195144 214195222 -28469131 - L1MC4 LINE L1 -831 5333 5262 810 220 43 0 chr1 214195281 214195516 -28468837 + MIR SINE MIR 1 211 -51 356 83 0 0 chr1 214195881 214195929 -28468424 + LTR54B LTR ERV1 8 55 -443 508 211 94 6 chr1 214195992 214196172 -28468181 + LTR54 LTR ERV1 315 510 0 624 255 44 5 chr1 214196188 214196392 -28467961 + MER33 DNA MER1_type 2 213 -111 31 0 0 0 chr1 214196392 214196423 -28467930 + AT_rich Low_complexity Low_complexity 1 31 0 616 159 24 32 chr1 214197345 214197471 -28466882 + FLAM_C SINE Alu 1 125 -8 2040 98 0 0 chr1 214197564 214197828 -28466525 - AluSx SINE Alu -48 264 1 403 356 53 10 chr1 214197981 214198189 -28466164 - MIR SINE MIR -14 248 32 253 345 87 45 chr1 214198182 214198469 -28465884 - L2 LINE L2 -349 2965 2667 * 188 83 0 28 chr1 214198470 214198506 -28465847 + (GAATG)n Simple_repeat Simple_repeat 3 37 0 244 221 29 29 chr1 214198928 214198996 -28465357 - L2 LINE L2 -21 3292 3225 2527 47 0 0 chr1 214199254 214199550 -28464803 + AluY SINE Alu 1 296 -15 284 320 115 16 chr1 214199601 214199845 -28464508 - MLT1K LTR MaLR -23 565 294 2494 71 0 0 chr1 214199845 214200153 -28464200 - AluY SINE Alu -3 308 1 24 0 0 0 chr1 214200285 214200309 -28464044 + AT_rich Low_complexity Low_complexity 1 24 0 557 224 0 9 chr1 214200338 214200454 -28463899 - MER8 DNA MER2_type -123 116 2 2411 81 0 3 chr1 214200591 214200901 -28463452 + AluY SINE Alu 1 309 -2 857 202 148 18 chr1 214201896 214202119 -28462234 + MIR SINE MIR 6 257 -5 2025 134 0 10 chr1 214202815 214203114 -28461239 - AluSx SINE Alu -16 296 1 2092 103 21 0 chr1 214203127 214203408 -28460945 - AluSg SINE Alu -23 287 1 1331 99 0 0 chr1 214203425 214203606 -28460747 + AluSg/x SINE Alu 119 299 -11 2160 78 21 14 chr1 214203822 214204103 -28460250 + AluSg SINE Alu 2 284 -26 23 0 0 0 chr1 214204113 214204136 -28460217 + AT_rich Low_complexity Low_complexity 1 23 0 2030 117 52 0 chr1 214204316 214204606 -28459747 + AluSx SINE Alu 1 305 -7 1885 167 3 10 chr1 214204611 214204922 -28459431 + AluJb SINE Alu 2 310 -2 2638 48 0 6 chr1 214204922 214205234 -28459119 + AluY SINE Alu 1 310 -1 199 75 0 50 chr1 214205245 214205285 -28459068 + (GAA)n Simple_repeat Simple_repeat 1 38 0 905 141 68 58 chr1 214206394 214206600 -28457753 - AluJo SINE Alu 0 312 105 1926 113 7 11 chr1 214206634 214206909 -28457444 - AluSx SINE Alu -38 274 1 531 0 0 0 chr1 214207019 214207078 -28457275 + (TA)n Simple_repeat Simple_repeat 2 60 0 283 93 0 0 chr1 214207287 214207330 -28457023 + Alu SINE Alu 254 296 -5 704 321 135 20 chr1 214207381 214207625 -28456728 - MLT1K LTR MaLR -23 565 351 2456 81 0 0 chr1 214207625 214207933 -28456420 - AluY SINE Alu -3 308 1 704 321 135 20 chr1 214207933 214208139 -28456214 - MLT1K LTR MaLR -237 351 63 2264 80 0 41 chr1 214208143 214208457 -28455896 - AluY SINE Alu -10 301 1 661 299 212 14 chr1 214208557 214208901 -28455452 + L2 LINE L2 2889 3300 -13 21 0 0 0 chr1 214209071 214209092 -28455261 + AT_rich Low_complexity Low_complexity 1 21 0 2302 98 3 7 chr1 214209201 214209506 -28454847 + AluSg SINE Alu 1 304 -6 856 177 108 52 chr1 214209510 214209798 -28454555 - MER33 DNA MER1_type -14 310 7 382 294 63 14 chr1 214209828 214209971 -28454382 - L2 LINE L2 0 3313 3164 252 181 145 24 chr1 214210022 214210105 -28454248 - L1ME3 LINE L1 -15 6147 6055 23 33 0 0 chr1 214211659 214211689 -28452664 + AT_rich Low_complexity Low_complexity 1 30 0 2028 124 3 20 chr1 214211689 214211988 -28452365 + AluSx SINE Alu 1 294 -18 2220 48 7 37 chr1 214211997 214212292 -28452061 + AluY SINE Alu 4 289 -22 2211 101 6 29 chr1 214213306 214213622 -28450731 - AluSp SINE Alu -4 309 1 180 0 0 0 chr1 214214243 214214263 -28450090 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1556 194 7 14 chr1 214214268 214214552 -28449801 - AluJo SINE Alu -30 282 1 1842 170 3 6 chr1 214214647 214214958 -28449395 - AluJo SINE Alu 0 312 3 204 40 0 0 chr1 214214964 214214989 -28449364 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 783 157 0 0 chr1 214214992 214215107 -28449246 - FLAM_C SINE Alu -16 117 3 686 168 0 0 chr1 214215408 214215515 -28448838 - FLAM_C SINE Alu -36 107 1 442 306 189 0 chr1 214215921 214216101 -28448252 - MIR SINE MIR -47 215 2 2289 98 6 16 chr1 214216891 214217206 -28447147 - AluSx SINE Alu 0 312 1 976 253 16 4 chr1 214217917 214218174 -28446179 - MLT1C LTR MaLR 0 467 208 1705 169 7 50 chr1 214218188 214218342 -28446011 - AluSx SINE Alu -23 289 130 2286 100 0 13 chr1 214218342 214218641 -28445712 - AluSx SINE Alu -17 295 1 1705 169 7 50 chr1 214218641 214218653 -28445700 - AluSx SINE Alu -182 130 119 2398 94 3 0 chr1 214218653 214218961 -28445392 - AluY SINE Alu -2 309 1 1705 169 7 50 chr1 214218961 214219095 -28445258 - AluSx SINE Alu -193 119 1 261 0 0 0 chr1 214219133 214219162 -28445191 + (T)n Simple_repeat Simple_repeat 1 29 0 2211 108 0 3 chr1 214219398 214219695 -28444658 + AluSg SINE Alu 1 296 -14 486 179 114 8 chr1 214219977 214220100 -28444253 - MLT1C LTR MaLR -331 136 1 2068 139 0 16 chr1 214220329 214220639 -28443714 - AluSx SINE Alu -7 305 1 2328 90 0 0 chr1 214220652 214220942 -28443411 - AluSg SINE Alu -19 291 2 380 271 93 0 chr1 214221338 214221456 -28442897 - MIR3 SINE MIR -3 205 77 296 198 161 0 chr1 214221506 214221587 -28442766 + MIR SINE MIR 79 172 -90 207 0 0 0 chr1 214221856 214221879 -28442474 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 261 0 0 0 chr1 214221878 214221907 -28442446 + (TG)n Simple_repeat Simple_repeat 2 30 0 546 200 0 121 chr1 214222299 214222514 -28441839 - L1MC5 LINE L1 -68 7893 7705 1867 166 0 0 chr1 214222517 214222807 -28441546 - AluJb SINE Alu -10 302 13 2109 129 3 7 chr1 214222822 214223125 -28441228 - AluSp SINE Alu -11 302 1 252 171 0 53 chr1 214223148 214223224 -28441129 - L1MC5 LINE L1 -280 7681 7610 859 186 0 0 chr1 214223637 214223782 -28440571 - FRAM SINE Alu -21 155 11 306 293 57 9 chr1 214225118 214225224 -28439129 - L1MC4a LINE L1 -1882 5926 5816 * 349 301 71 28 chr1 214225219 214225264 -28439089 - L1MB8 LINE L1 -1 6177 6135 2251 100 0 7 chr1 214225264 214225564 -28438789 + AluSg1 SINE Alu 1 298 -11 349 301 71 28 chr1 214225564 214225673 -28438680 - L1MB8 LINE L1 -43 6135 6010 334 279 186 25 chr1 214225700 214225861 -28438492 + MIR SINE MIR 28 214 -48 1637 162 49 4 chr1 214225926 214226192 -28438161 + AluJo SINE Alu 5 282 -30 272 333 56 28 chr1 214226207 214226315 -28438038 - L2 LINE L2 -12 3260 3150 1878 163 10 0 chr1 214226735 214227029 -28437324 - AluSx SINE Alu -15 297 1 2443 79 0 25 chr1 214227165 214227483 -28436870 - AluSp SINE Alu -3 310 1 2248 100 0 0 chr1 214230066 214230365 -28433988 - AluSp SINE Alu -14 299 1 1921 146 7 7 chr1 214230365 214230659 -28433694 - AluSx SINE Alu -18 294 1 476 87 120 0 chr1 214230667 214230759 -28433594 - L1MA8 LINE L1 -3 6288 6186 25 65 0 0 chr1 214230786 214230832 -28433521 + AT_rich Low_complexity Low_complexity 1 46 0 881 130 0 29 chr1 214231590 214231728 -28432625 - AluJb SINE Alu -178 134 1 1504 187 10 10 chr1 214231792 214232081 -28432272 + AluJo SINE Alu 1 289 -23 25 0 0 0 chr1 214232081 214232106 -28432247 + AT_rich Low_complexity Low_complexity 1 25 0 2437 58 0 13 chr1 214233452 214233760 -28430593 - AluY SINE Alu -7 304 1 737 268 88 31 chr1 214233890 214234118 -28430235 - MIR SINE MIR -21 241 1 24 67 0 0 chr1 214234166 214234211 -28430142 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr1 214234245 214234268 -28430085 + AT_rich Low_complexity Low_complexity 1 23 0 193 213 43 0 chr1 214234336 214234383 -28429970 - MIR SINE MIR -31 231 183 430 237 97 9 chr1 214234415 214234529 -28429824 + L2 LINE L2 3190 3313 0 277 345 35 9 chr1 214234539 214234655 -28429698 - MIR SINE MIR -123 139 21 21 36 0 0 chr1 214235062 214235090 -28429263 + AT_rich Low_complexity Low_complexity 1 28 0 1712 181 7 4 chr1 214235505 214235786 -28428567 + AluJb SINE Alu 1 282 -30 2471 84 0 3 chr1 214235808 214236119 -28428234 + AluY SINE Alu 1 310 -1 1052 116 0 0 chr1 214236132 214236279 -28428074 + AluSg/x SINE Alu 155 301 -9 332 288 121 45 chr1 214237161 214237293 -28427060 - MIR3 SINE MIR -51 157 16 1885 171 11 20 chr1 214237953 214238033 -28426320 + MER7A DNA MER2_type 1 80 -2958 1171 170 8 104 chr1 214238033 214238292 -28426061 - MER8 DNA MER2_type -4 235 2 1885 171 11 20 chr1 214238292 214238561 -28425792 + MER7A DNA MER2_type 80 345 -1 1937 116 72 0 chr1 214238888 214239165 -28425188 - AluSx SINE Alu -15 297 1 5550 147 21 28 chr1 214239217 214240539 -28423814 - L1MA4A LINE L1 -11 6292 4978 1880 55 0 0 chr1 214240539 214240758 -28423595 - AluY SINE Alu -10 301 83 5550 147 21 28 chr1 214240758 214241155 -28423198 - L1MA4A LINE L1 -1325 4978 4580 1928 109 0 69 chr1 214241155 214241345 -28423008 - AluSx SINE Alu 0 305 144 2137 104 3 3 chr1 214241345 214241634 -28422719 - AluSp SINE Alu -23 290 2 1928 109 0 69 chr1 214241634 214241769 -28422584 - AluSx SINE Alu -161 144 1 2310 95 3 0 chr1 214241777 214242071 -28422282 - AluY SINE Alu -8 303 9 1192 171 33 0 chr1 214242079 214242319 -28422034 - L1MA4A LINE L1 -2404 3742 3495 207 0 0 0 chr1 214242452 214242475 -28421878 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 243 0 0 0 chr1 214242474 214242501 -28421852 + (TG)n Simple_repeat Simple_repeat 2 28 0 574 185 0 179 chr1 214242893 214243000 -28421353 - L1MC5 LINE L1 -68 7893 7769 2835 10 0 0 chr1 214243000 214243309 -28421044 - AluYb8 SINE Alu -9 309 1 574 185 0 179 chr1 214243309 214243431 -28420922 - L1MC5 LINE L1 -192 7769 7627 1876 165 0 0 chr1 214243431 214243722 -28420631 - AluJb SINE Alu -9 303 13 574 185 0 179 chr1 214243722 214243737 -28420616 - L1MC5 LINE L1 -334 7627 7724 2109 129 3 7 chr1 214243737 214244040 -28420313 - AluSp SINE Alu -11 302 1 574 185 0 179 chr1 214244040 214244139 -28420214 - L1MC5 LINE L1 -236 7725 7610 859 186 0 0 chr1 214244529 214244674 -28419679 - FRAM SINE Alu -21 155 11 980 173 61 36 chr1 214245484 214245684 -28418669 - L1MA4A LINE L1 -2632 3514 3304 2148 116 0 10 chr1 214245684 214245994 -28418359 - AluSg1 SINE Alu -2 307 1 980 173 61 36 chr1 214245994 214246071 -28418282 - L1MA4A LINE L1 -2842 3304 3230 319 327 139 48 chr1 214246108 214246176 -28418177 + L2 LINE L2 3042 3102 -170 2009 138 17 0 chr1 214246176 214246474 -28417879 - AluSx SINE Alu -9 303 1 319 327 139 48 chr1 214246474 214246613 -28417740 + L2 LINE L2 3102 3268 -4 1825 215 125 39 chr1 214246842 214247507 -28416846 - L1MC4 LINE L1 -30 8012 7291 191 269 134 15 chr1 214247696 214247763 -28416590 - L2 LINE L2 -12 3260 3186 1747 196 0 0 chr1 214247924 214248236 -28416117 - AluJo SINE Alu 0 312 1 189 274 27 55 chr1 214248258 214248331 -28416022 - L2 LINE L2 -272 3000 2930 2149 122 3 0 chr1 214248533 214248828 -28415525 - AluSx SINE Alu -16 296 1 29 28 0 0 chr1 214248961 214248997 -28415356 + AT_rich Low_complexity Low_complexity 1 36 0 569 214 23 7 chr1 214248997 214249164 -28415189 - L1ME1 LINE L1 -73 6105 5931 2145 130 0 0 chr1 214249307 214249600 -28414753 - AluSx SINE Alu -19 293 1 914 136 0 141 chr1 214249627 214249833 -28414520 + AluSq SINE Alu 137 313 0 507 178 10 0 chr1 214250332 214250433 -28413920 + U13 snRNA snRNA 1 102 -2 2286 95 3 0 chr1 214251359 214251653 -28412700 + AluSg SINE Alu 1 295 -15 34 65 0 0 chr1 214251699 214251761 -28412592 + AT_rich Low_complexity Low_complexity 1 62 0 1885 159 0 3 chr1 214252636 214252931 -28411422 + AluJo SINE Alu 1 294 -18 1761 134 98 0 chr1 214253492 214253767 -28410586 + AluSx SINE Alu 1 302 -10 268 278 125 0 chr1 214253769 214253841 -28410512 - L2 LINE L2 -10 3262 3182 2598 36 3 0 chr1 214253871 214254172 -28410181 + AluY SINE Alu 1 302 -9 1136 114 0 99 chr1 214254173 214254375 -28409978 + AluJo SINE Alu 126 307 -5 320 260 62 10 chr1 214254921 214255017 -28409336 - L1M2 LINE L1 -6038 811 711 1249 166 113 8 chr1 214255344 214255591 -28408762 + AluSg SINE Alu 28 300 -10 268 278 125 0 chr1 214255593 214255665 -28408688 - L2 LINE L2 -10 3262 3182 2631 43 0 0 chr1 214255695 214255995 -28408358 + AluY SINE Alu 1 300 -11 467 254 200 0 chr1 214255999 214256184 -28408169 + MIR SINE MIR 28 249 -13 2055 116 14 11 chr1 214257214 214257498 -28406855 + AluSx SINE Alu 6 290 -22 23 0 0 0 chr1 214258342 214258365 -28405988 + AT_rich Low_complexity Low_complexity 1 23 0 188 197 98 49 chr1 214259553 214259614 -28404739 - MIR SINE MIR -64 144 81 458 272 95 7 chr1 214260082 214260229 -28404124 + MIR SINE MIR 20 179 -83 1490 109 0 9 chr1 214261040 214261260 -28403093 + AluY SINE Alu 91 308 -3 2235 103 7 0 chr1 214261401 214261692 -28402661 - AluSq SINE Alu -20 293 1 266 298 0 0 chr1 214262536 214262620 -28401733 + (TA)n Simple_repeat Simple_repeat 1 84 0 698 106 29 0 chr1 214264821 214264925 -28399428 - FLAM_A SINE Alu -4 138 32 190 236 112 34 chr1 214264946 214265035 -28399318 - MIR SINE MIR -10 252 157 2336 103 0 3 chr1 214266796 214267097 -28397256 - AluSx SINE Alu -12 300 1 774 261 122 56 chr1 214267097 214267446 -28396907 + L2 LINE L2 2741 3139 -174 829 146 8 0 chr1 214267446 214267576 -28396777 - FLAM_C SINE Alu -2 131 1 774 261 122 56 chr1 214267576 214267731 -28396622 + L2 LINE L2 3139 3282 -31 23 54 0 0 chr1 214267731 214267768 -28396585 + AT_rich Low_complexity Low_complexity 1 37 0 2187 52 0 0 chr1 214268326 214268596 -28395757 - L1PA5 LINE L1 -4 6150 5881 1212 237 131 25 chr1 214268934 214269424 -28394929 + MLT1F LTR MaLR 1 542 0 2300 92 0 13 chr1 214269442 214269745 -28394608 - AluSx SINE Alu -13 299 1 355 335 62 11 chr1 214269880 214270059 -28394294 + MIR3 SINE MIR 15 202 -6 206 340 50 35 chr1 214270100 214270241 -28394112 - L3 LINE CR1 -125 1452 1310 393 275 205 6 chr1 214270241 214270412 -28393941 - MIR SINE MIR -1 261 57 2224 118 0 0 chr1 214270675 214270971 -28393382 - AluSx SINE Alu -16 296 1 398 341 92 62 chr1 214271230 214271731 -28392622 - L2 LINE L2 -558 2756 2241 2391 84 0 0 chr1 214273165 214273461 -28390892 - AluSq SINE Alu -17 296 1 222 211 0 0 chr1 214273534 214273572 -28390781 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr1 214274169 214274190 -28390163 + AT_rich Low_complexity Low_complexity 1 21 0 2119 125 3 26 chr1 214274456 214274767 -28389586 + AluSx SINE Alu 1 304 -8 306 296 75 31 chr1 214275037 214275196 -28389157 + L2 LINE L2 2589 2754 -560 297 176 44 29 chr1 214275203 214275271 -28389082 - MIR SINE MIR 0 262 194 246 293 93 0 chr1 214275564 214275639 -28388714 + L2 LINE L2 3154 3235 -37 207 356 0 19 chr1 214275889 214275993 -28388360 - L2 LINE L2 -1351 1963 1862 1062 254 73 21 chr1 214277191 214277573 -28386780 + L1ME LINE L1 5354 5755 -407 21 57 0 0 chr1 214277613 214277648 -28386705 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr1 214277648 214277668 -28386685 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 807 207 58 21 chr1 214277668 214277856 -28386497 + AluJo SINE Alu 86 280 -32 2462 54 14 0 chr1 214278088 214278382 -28385971 - AluY SINE Alu -12 299 2 240 86 0 0 chr1 214278450 214278485 -28385868 + (TA)n Simple_repeat Simple_repeat 2 36 0 916 114 8 0 chr1 214279198 214279330 -28385023 - FRAM SINE Alu 0 40 1 739 219 30 63 chr1 214279882 214280119 -28384234 - L2 LINE L2 0 3313 3085 212 302 63 0 chr1 214280491 214280554 -28383799 - MIR SINE MIR -85 177 111 461 289 33 27 chr1 214281692 214281891 -28382462 + MIR SINE MIR 15 213 -49 2157 117 10 7 chr1 214282825 214283124 -28381229 - AluSx SINE Alu -10 302 3 2039 135 7 3 chr1 214283134 214283431 -28380922 - AluSq SINE Alu -15 298 1 322 302 87 0 chr1 214284185 214284311 -28380042 - L2 LINE L2 -217 3055 2919 1336 199 82 42 chr1 214284433 214284626 -28379727 - Charlie1 DNA MER1_type -2 2759 2575 4362 43 4 0 chr1 214284626 214285160 -28379193 + L1PA7 LINE L1 5615 6150 -4 1336 199 82 42 chr1 214285160 214285367 -28378986 - Charlie1 DNA MER1_type -186 2575 2343 2315 89 0 0 chr1 214288490 214288783 -28375570 + AluY SINE Alu 18 310 -1 210 143 0 0 chr1 214288983 214289018 -28375335 + (CA)n Simple_repeat Simple_repeat 1 35 0 1613 72 64 16 chr1 214289128 214289378 -28374975 - L1MA1 LINE L1 -6 6296 6035 2002 95 33 4 chr1 214289950 214290251 -28374102 - AluSg SINE Alu 0 309 1 269 232 0 0 chr1 214291073 214291129 -28373224 + L1M3a LINE L1 5 60 -5895 254 375 0 42 chr1 214291170 214291407 -28372946 + L1M3a LINE L1 226 452 -5503 4287 234 91 26 chr1 214291847 214293558 -28370795 + L1M3f LINE L1 535 2347 -3981 298 287 20 20 chr1 214293559 214293661 -28370692 + FRAM/FAM SINE Alu 1 77 -89 4711 170 74 97 chr1 214293674 214293876 -28370477 + L1M3f LINE L1 2358 2563 -3765 903 85 31 0 chr1 214293876 214294005 -28370348 + AluSg/x SINE Alu 176 308 -4 4711 170 74 97 chr1 214294005 214294616 -28369737 + L1M3f LINE L1 2563 3187 -3141 2519 58 0 0 chr1 214294616 214294909 -28369444 + AluSc SINE Alu 1 293 -16 4711 170 74 97 chr1 214294909 214295515 -28368838 + L1M3f LINE L1 3187 3870 -2458 1407 152 27 8 chr1 214295608 214295865 -28368488 - MER2 DNA MER2_type 0 345 84 941 170 48 0 chr1 214295867 214296032 -28368321 - AluJb SINE Alu -16 296 124 394 219 10 31 chr1 214296032 214296128 -28368225 - MER2 DNA MER2_type -251 94 1 1337 175 68 34 chr1 214296502 214296794 -28367559 + AluJo SINE Alu 1 302 -10 1892 162 3 17 chr1 214297984 214298281 -28366072 - AluJb SINE Alu -14 298 6 246 205 0 0 chr1 214298550 214298589 -28365764 + AluJ/monomer SINE Alu 1 39 -262 22 0 0 0 chr1 214298733 214298755 -28365598 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 214299230 214299273 -28365080 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr1 214299681 214299717 -28364636 + AT_rich Low_complexity Low_complexity 1 36 0 1837 183 7 0 chr1 214299717 214300023 -28364330 + AluJb SINE Alu 1 308 -4 850 136 0 36 chr1 214300118 214300258 -28364095 + AluJo SINE Alu 1 135 -177 1889 162 0 22 chr1 214300258 214300573 -28363780 + AluJo SINE Alu 1 308 -4 571 280 36 9 chr1 214300713 214300938 -28363415 - MLT1K LTR MaLR -282 306 76 207 114 0 0 chr1 214353413 214353448 -28310905 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1819 177 3 0 chr1 214353592 214353891 -28310462 + AluJo SINE Alu 12 311 -1 455 254 18 35 chr1 214354793 214354907 -28309446 + FRAM SINE Alu 52 163 -13 22 35 0 0 chr1 214354968 214354997 -28309356 + AT_rich Low_complexity Low_complexity 1 29 0 1908 181 0 0 chr1 214355165 214355469 -28308884 - AluJb SINE Alu -8 304 1 897 65 0 0 chr1 214355990 214356133 -28308220 - AluY SINE Alu 0 318 176 378 161 0 0 chr1 214356372 214356434 -28307919 - MST-int LTR MaLR -1140 511 450 * 1697 126 16 0 chr1 214356427 214356682 -28307671 - THE1-int LTR MaLR -1225 355 97 1108 97 13 0 chr1 214356679 214356833 -28307520 - THE1-int LTR MaLR -1424 156 1 * 2465 88 77 11 chr1 214356833 214357185 -28307168 - THE1C LTR MaLR 0 375 1 237 231 58 110 chr1 214357185 214357348 -28307005 - L1M4 LINE L1 -1442 4704 4549 1396 141 103 12 chr1 214357389 214357734 -28306619 - L1MA9 LINE L1 -5 6307 5898 212 215 16 83 chr1 214357865 214357986 -28306367 + T-rich Low_complexity Low_complexity 4 116 0 5501 195 95 5 chr1 214358181 214359481 -28304872 + L1 LINE L1 3914 5331 -815 4681 60 3 0 chr1 214359480 214360076 -28304277 + L1P LINE L1 2 599 -5547 * 2572 47 0 0 chr1 214360502 214360798 -28303555 - AluY SINE Alu -15 296 1 2407 129 30 30 chr1 214361081 214361445 -28302908 + THE1B LTR MaLR 1 364 0 255 288 12 0 chr1 214361601 214361681 -28302672 - MIR SINE MIR -7 255 175 345 314 89 33 chr1 214361780 214362117 -28302236 + L2 LINE L2 2380 2735 -579 1595 286 53 12 chr1 214362152 214362862 -28301491 + ERVL LTR ERVL 3010 3805 -1849 371 294 29 77 chr1 214362843 214363013 -28301340 + ERVL LTR ERVL 4194 4355 -1409 * 746 138 0 0 chr1 214363016 214363132 -28301221 + MLT1B LTR MaLR 1 116 -274 5623 90 13 19 chr1 214363236 214363384 -28300969 + L1PB2 LINE L1 697 844 -5307 8059 20 9 0 chr1 214363384 214364312 -28300041 + L1PA2 LINE L1 5220 6155 0 5623 90 13 19 chr1 214364312 214365132 -28299221 + L1PB2 LINE L1 844 6144 -7 986 193 87 17 chr1 214367111 214367358 -28296995 + MLT1H LTR MaLR 1 305 -244 2456 80 0 0 chr1 214367448 214367747 -28296606 + AluY SINE Alu 1 299 -12 1233 123 0 0 chr1 214367747 214367910 -28296443 + AluSg/x SINE Alu 134 296 -16 971 212 100 124 chr1 214367910 214368378 -28295975 + MLT1G1 LTR MaLR 20 523 -65 2238 105 3 7 chr1 214368378 214368682 -28295671 - AluSp SINE Alu -9 304 2 971 212 100 124 chr1 214368682 214368747 -28295606 + MLT1G1 LTR MaLR 523 588 0 6075 120 19 7 chr1 214369536 214370425 -28293928 + THE1C-int LTR MaLR 674 1573 -7 2305 115 23 62 chr1 214370430 214370820 -28293533 + THE1C LTR MaLR 1 375 0 343 379 66 14 chr1 214370858 214371220 -28293133 + L1ME LINE L1 4777 5157 -989 310 296 74 26 chr1 214371239 214371541 -28292812 + L1ME LINE L1 5268 5584 -2224 334 299 15 29 chr1 214371551 214371688 -28292665 + L1ME LINE L1 5685 5819 -302 1577 163 47 20 chr1 214371697 214371997 -28292356 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr1 214372069 214372092 -28292261 + AT_rich Low_complexity Low_complexity 1 23 0 3932 230 38 39 chr1 214372228 214373261 -28291092 + L1PA12 LINE L1 12 1043 -6538 4495 85 19 10 chr1 214373543 214374129 -28290224 + L1PA11 LINE L1 5583 6173 -1 1188 158 10 20 chr1 214374155 214374358 -28289995 + MER3 DNA MER1_type 9 209 0 372 325 24 18 chr1 214374793 214374962 -28289391 + L2 LINE L2 2595 2764 -550 * 381 322 25 35 chr1 214374957 214375156 -28289197 + L2 LINE L2 2560 2756 -558 4620 176 39 15 chr1 214375342 214375371 -28288982 - L1MB2 LINE L1 -2 6169 6142 2301 71 0 34 chr1 214375371 214375701 -28288652 + AluY SINE Alu 1 320 0 4620 176 39 15 chr1 214375701 214377134 -28287219 - L1MB2 LINE L1 -29 6142 4667 1232 179 157 16 chr1 214377276 214377729 -28286624 - Charlie2 DNA MER1_type -116 2746 2230 231 193 303 46 chr1 214377754 214377863 -28286490 - Charlie2 DNA MER1_type -2498 284 148 236 224 0 0 chr1 214378314 214378363 -28285990 + L2 LINE L2 3264 3312 -1 705 248 168 0 chr1 214378609 214378823 -28285530 + MIR SINE MIR 13 262 0 2530 64 0 0 chr1 214378826 214379123 -28285230 - AluY SINE Alu -14 297 1 228 245 113 38 chr1 214379545 214379651 -28284702 + L1MC/D LINE L1 5709 5822 -1986 264 292 52 0 chr1 214380111 214380207 -28284146 + L3b LINE CR1 1350 1450 -133 29 70 0 0 chr1 214380319 214380376 -28283977 + AT_rich Low_complexity Low_complexity 1 57 0 23629 157 21 20 chr1 214384195 214386053 -28278300 + L1P4 LINE L1 948 2803 -3371 2347 100 0 6 chr1 214386053 214386364 -28277989 + AluSc SINE Alu 1 309 0 23629 157 21 20 chr1 214386364 214389017 -28275336 + L1P4 LINE L1 2803 5463 -711 320 187 15 37 chr1 214389144 214389278 -28275075 + CT-rich Low_complexity Low_complexity 3 133 0 435 92 0 0 chr1 214389754 214389819 -28274534 + (CA)n Simple_repeat Simple_repeat 2 66 0 1894 160 10 0 chr1 214390333 214390626 -28273727 + AluSx SINE Alu 2 297 -15 2106 164 46 59 chr1 214390776 214391214 -28273139 - MSTB1 LTR MaLR 0 432 1 1488 118 4 18 chr1 214391214 214391443 -28272910 - MSTB1-int LTR MaLR 0 1651 1426 237 219 137 27 chr1 214391501 214391574 -28272779 - MIR SINE MIR -65 197 117 381 213 6 65 chr1 214391738 214391895 -28272458 - MER3 DNA MER1_type 0 209 1 1530 167 60 71 chr1 214392563 214392928 -28271425 + MLT1A1 LTR MaLR 1 361 -4 191 253 133 0 chr1 214392983 214393058 -28271295 + L2 LINE L2 1984 2068 -1246 225 297 0 0 chr1 214393950 214394014 -28270339 + (CTG)n Simple_repeat Simple_repeat 3 66 0 1103 182 0 0 chr1 214394173 214394338 -28270015 + FRAM SINE Alu 2 166 0 392 276 24 24 chr1 214394784 214394907 -28269446 + L1ME LINE L1 5468 5590 -531 1811 136 29 11 chr1 214397101 214397417 -28266936 + AluSx SINE Alu 1 321 0 1046 275 44 38 chr1 214397420 214398031 -28266322 + L1MEc LINE L1 1826 2440 -3956 * 1995 229 109 41 chr1 214398018 214398408 -28265945 + HAL1 LINE L1 1140 1502 -1005 2452 97 0 0 chr1 214398408 214398718 -28265635 - AluSx SINE Alu -2 310 1 1995 229 109 41 chr1 214398718 214399077 -28265276 + HAL1 LINE L1 1502 1940 -567 340 270 29 72 chr1 214399130 214399358 -28264995 + MLT1J LTR MaLR 194 330 -181 2235 192 10 12 chr1 214399642 214400032 -28264321 - MER88 LTR ERVL 0 464 74 9287 86 0 2 chr1 214400032 214402026 -28262327 + L1PA7 LINE L1 4164 6151 -3 21 0 0 0 chr1 214402494 214402515 -28261838 + AT_rich Low_complexity Low_complexity 1 21 0 2176 92 0 0 chr1 214402662 214403050 -28261303 - AluY SINE Alu 0 388 1 319 326 130 7 chr1 214403056 214403194 -28261159 - MIR SINE MIR -74 188 34 642 238 149 10 chr1 214403587 214403889 -28260464 - L1ME4a LINE L1 -135 5986 5643 241 286 50 92 chr1 214404036 214404155 -28260198 - L2 LINE L2 -17 3255 3142 420 264 9 9 chr1 214404275 214404381 -28259972 - L2 LINE L2 -5 3308 3203 500 317 0 7 chr1 214404388 214404530 -28259823 + MIR SINE MIR 25 165 -97 288 0 0 0 chr1 214404746 214404778 -28259575 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr1 214404881 214404903 -28259450 + AT_rich Low_complexity Low_complexity 1 22 0 2308 89 0 0 chr1 214404965 214405256 -28259097 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr1 214405267 214405288 -28259065 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 214405691 214405714 -28258639 + AT_rich Low_complexity Low_complexity 1 23 0 1508 164 105 65 chr1 214405732 214406056 -28258297 + MER1B DNA MER1_type 1 337 0 216 0 0 0 chr1 214406086 214406110 -28258243 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1485 184 38 19 chr1 214406122 214406389 -28257964 - AluJo SINE Alu -40 272 1 1792 187 0 10 chr1 214406827 214407127 -28257226 + AluJb SINE Alu 1 297 -15 1155 195 171 60 chr1 214407228 214407783 -28256570 - Charlie2 DNA MER1_type -1 2861 2245 651 175 224 9 chr1 214407834 214408054 -28256299 - Charlie2a DNA MER1_type -1838 1024 757 4008 143 29 46 chr1 214408054 214408837 -28255516 - LTR1 LTR ERV1 0 785 16 1295 231 269 29 chr1 214408932 214409485 -28254868 - Charlie2a DNA MER1_type -2176 686 1 607 235 47 80 chr1 214409530 214409743 -28254610 + MIR SINE MIR 56 261 -1 180 125 0 0 chr1 214409747 214409779 -28254574 + (TTA)n Simple_repeat Simple_repeat 2 33 0 240 281 196 50 chr1 214410184 214410383 -28253970 + MIR SINE MIR 35 262 0 397 245 10 0 chr1 214411091 214411189 -28253164 - MER103 DNA DNA -46 120 22 2782 44 3 0 chr1 214412734 214413053 -28251300 + L1PA4 LINE L1 5836 6155 0 1345 115 62 0 chr1 214413768 214413977 -28250376 + MER50 LTR ERV1 1 222 -512 * 1602 131 6 86 chr1 214413964 214414277 -28250076 + MER50 LTR ERV1 447 734 0 874 199 0 6 chr1 214414495 214414651 -28249702 - FRAM SINE Alu -18 158 4 2281 95 0 10 chr1 214415401 214415695 -28248658 - AluSg SINE Alu -19 291 1 358 162 0 27 chr1 214415973 214416047 -28248306 - Tigger5 DNA MER2_type -168 2155 2084 891 225 6 17 chr1 214416080 214416253 -28248100 - Tigger5 DNA MER2_type -2152 171 1 185 271 21 0 chr1 214416464 214416512 -28247841 + MIR SINE MIR 90 138 -124 897 184 6 12 chr1 214416512 214416680 -28247673 - MER3 DNA MER1_type 0 209 43 878 302 62 41 chr1 214416754 214417080 -28247273 - L2 LINE L2 -245 3068 2730 2242 118 0 0 chr1 214417080 214417369 -28246984 + AluSg SINE Alu 1 289 -21 878 302 62 41 chr1 214417369 214417535 -28246818 - L2 LINE L2 -583 2730 2569 767 325 164 30 chr1 214417541 214418716 -28245637 + L2 LINE L2 1701 3046 -226 261 0 0 0 chr1 214418984 214419013 -28245340 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 370 309 73 0 chr1 214420627 214420763 -28243590 - L2 LINE L2 0 3313 3168 995 144 43 21 chr1 214420770 214420957 -28243396 - Tigger7 DNA MER2_type 0 2487 2297 185 211 0 0 chr1 214421027 214421065 -28243288 + L2 LINE L2 3276 3313 0 24 32 0 0 chr1 214421243 214421274 -28243079 + AT_rich Low_complexity Low_complexity 1 31 0 253 256 61 12 chr1 214421554 214421636 -28242717 + MIR3 SINE MIR 121 206 -2 344 267 105 0 chr1 214422562 214422648 -28241705 + MIR3 SINE MIR 87 181 -27 209 321 0 0 chr1 214422905 214422961 -28241392 - L2 LINE L2 -6 3266 3211 5663 68 25 0 chr1 214423206 214423879 -28240474 + LTR8 LTR ERV1 1 690 -1 273 271 33 124 chr1 214424051 214424226 -28240127 - L2 LINE L2 -792 2522 2367 1571 184 6 41 chr1 214424226 214424542 -28239811 + AluJo SINE Alu 1 305 -7 273 271 33 124 chr1 214424542 214424576 -28239777 - L2 LINE L2 -947 2367 2332 22 35 0 0 chr1 214424597 214424626 -28239727 + AT_rich Low_complexity Low_complexity 1 29 0 805 244 70 67 chr1 214424858 214425259 -28239094 + MLT1J LTR MaLR 102 503 -8 221 364 141 19 chr1 214425989 214426195 -28238158 + L2 LINE L2 2495 2725 -589 385 327 149 43 chr1 214426237 214426586 -28237767 - L2 LINE L2 0 3272 2887 205 330 101 9 chr1 214427348 214427457 -28236896 + L2 LINE L2 2973 3091 -181 979 136 6 47 chr1 214427462 214427631 -28236722 - FRAM SINE Alu -11 165 4 280 284 95 0 chr1 214427675 214427770 -28236583 + L2 LINE L2 3100 3203 -69 357 333 85 74 chr1 214427773 214428233 -28236120 - L2 LINE L2 0 3272 2808 1722 229 28 20 chr1 214428889 214429282 -28235071 - MSTD LTR MaLR 0 396 1 24 0 0 0 chr1 214430085 214430109 -28234244 + AT_rich Low_complexity Low_complexity 1 24 0 1106 174 15 15 chr1 214431155 214431351 -28233002 - MER20 DNA MER1_type -17 202 7 2976 196 110 54 chr1 214431490 214431585 -28232768 - L1ME2 LINE L1 -9 6155 6067 247 132 0 0 chr1 214431585 214431623 -28232730 - MER3 DNA MER1_type -160 49 12 2976 196 110 54 chr1 214431623 214432354 -28231999 - L1ME2 LINE L1 -97 6067 5239 351 0 0 0 chr1 214432354 214432393 -28231960 + (TG)n Simple_repeat Simple_repeat 2 40 0 2976 196 110 54 chr1 214432393 214432439 -28231914 - L1ME2 LINE L1 -925 5239 5197 203 250 62 16 chr1 214432926 214432990 -28231363 - MIR3 SINE MIR -6 202 136 2019 178 71 15 chr1 214433610 214434004 -28230349 + MSTB LTR MaLR 10 425 -1 193 363 115 22 chr1 214434380 214434562 -28229791 + L2 LINE L2 3105 3303 -10 1795 151 41 3 chr1 214435150 214435442 -28228911 - AluSx SINE Alu -9 303 1 2124 123 0 0 chr1 214435451 214435744 -28228609 - AluSx SINE Alu -3 309 17 393 317 58 27 chr1 214435856 214436080 -28228273 - HAL1 LINE L1 -914 1593 1363 2249 274 89 50 chr1 214436094 214437281 -28227072 - L1MEd LINE L1 -4884 1235 3 244 280 34 51 chr1 214437553 214437671 -28226682 + MIR SINE MIR 86 201 -61 4850 146 50 54 chr1 214438151 214438703 -28225650 - L1MB2 LINE L1 -1 6170 5618 2429 78 0 0 chr1 214438703 214438998 -28225355 - AluY SINE Alu -16 295 1 4850 146 50 54 chr1 214438998 214439547 -28224806 - L1MB2 LINE L1 -553 5618 5069 529 260 144 84 chr1 214439675 214439969 -28224384 + LTR67 LTR ERVL 13 353 -204 1339 245 93 39 chr1 214439969 214440454 -28223899 + MLT1J LTR MaLR 1 511 0 529 260 144 84 chr1 214440454 214440671 -28223682 + LTR67 LTR ERVL 353 555 -2 253 268 36 0 chr1 214441735 214441791 -28222562 + L2 LINE L2 3204 3261 -52 2249 115 0 3 chr1 214441809 214442121 -28222232 - AluSx SINE Alu -1 311 1 326 312 150 30 chr1 214442236 214442502 -28221851 + L2 LINE L2 3016 3313 0 188 33 0 33 chr1 214442592 214442622 -28221731 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 233 344 0 0 chr1 214443027 214443088 -28221265 - MIR SINE MIR -112 96 36 2215 122 0 0 chr1 214443168 214443464 -28220889 - AluSx SINE Alu -16 296 1 325 300 49 94 chr1 214443723 214444150 -28220203 + MLT1K LTR MaLR 126 533 -55 474 322 15 25 chr1 214444577 214444776 -28219577 + MIR3 SINE MIR 3 199 -9 218 185 0 37 chr1 214445817 214445871 -28218482 + MIR SINE MIR 209 260 -2 1977 154 7 0 chr1 214445985 214446283 -28218070 - AluJo SINE Alu -12 300 1 2144 121 10 7 chr1 214446297 214446603 -28217750 - AluSx SINE Alu -5 307 1 243 88 0 0 chr1 214446990 214447024 -28217329 + (CAG)n Simple_repeat Simple_repeat 2 35 0 396 203 42 70 chr1 214447726 214447869 -28216484 - L1MC4 LINE L1 0 8042 7904 236 309 206 0 chr1 214448679 214448776 -28215577 - L2 LINE L2 -22 3250 3134 1514 167 0 4 chr1 214448818 214449057 -28215296 + AluJb SINE Alu 1 238 -74 218 320 8 13 chr1 214449122 214449292 -28215061 - L2 LINE L2 -219 3053 2914 212 308 60 26 chr1 214449557 214449674 -28214679 - MIR SINE MIR -119 143 23 1641 294 105 51 chr1 214450313 214451877 -28212476 + L1MEc LINE L1 8 1659 -4737 840 136 8 0 chr1 214451877 214452009 -28212344 + FLAM_C SINE Alu 1 133 0 194 96 0 96 chr1 214452033 214452085 -28212268 + (A)n Simple_repeat Simple_repeat 1 47 0 389 315 56 28 chr1 214453191 214453442 -28210911 + L2 LINE L2 2837 3094 -178 2464 89 0 0 chr1 214453801 214454105 -28210248 - AluSg SINE Alu -6 304 1 631 256 28 17 chr1 214454617 214454793 -28209560 - MIR SINE MIR -38 224 47 279 291 75 65 chr1 214455105 214455201 -28209152 - MIR SINE MIR -59 203 109 1858 120 54 11 chr1 214455201 214455477 -28208876 + AluSx SINE Alu 1 288 -24 279 291 75 65 chr1 214455477 214455579 -28208774 - MIR SINE MIR -153 109 3 22 0 0 0 chr1 214455960 214455982 -28208371 + AT_rich Low_complexity Low_complexity 1 22 0 2390 102 0 3 chr1 214457603 214457916 -28206437 - AluSx SINE Alu 0 312 1 845 225 73 5 chr1 214458553 214458744 -28205609 - L1MC1 LINE L1 -13 6320 6117 214 256 0 0 chr1 214459341 214459384 -28204969 + polypyrimidine Low_complexity Low_complexity 1 43 0 915 220 55 29 chr1 214459443 214459814 -28204539 + MER63 DNA MER1_type 1 442 -619 481 187 56 19 chr1 214459836 214459943 -28204410 + MER63 DNA MER1_type 950 1060 0 1790 115 74 43 chr1 214460905 214461228 -28203125 - L1MB5 LINE L1 -9 6165 5833 33 0 0 0 chr1 214461238 214461271 -28203082 + AT_rich Low_complexity Low_complexity 1 33 0 1085 220 113 52 chr1 214462026 214462449 -28201904 - MLT1J2 LTR MaLR -1 449 1 1385 169 20 20 chr1 214464058 214464306 -28200047 + AluJo SINE Alu 44 291 -21 278 212 15 0 chr1 214464562 214464628 -28199725 + L2 LINE L2 3247 3313 0 243 0 0 0 chr1 214465194 214465221 -28199132 + (CA)n Simple_repeat Simple_repeat 1 27 0 2073 115 18 3 chr1 214465221 214465507 -28198846 - AluSq SINE Alu -21 292 3 1774 132 56 35 chr1 214465511 214465799 -28198554 - AluSq SINE Alu -19 294 1 225 108 0 0 chr1 214465867 214465904 -28198449 + (ATG)n Simple_repeat Simple_repeat 2 38 0 2111 90 0 4 chr1 214467648 214467915 -28196438 + AluSc SINE Alu 1 266 -43 23 0 0 0 chr1 214468570 214468593 -28195760 + AT_rich Low_complexity Low_complexity 1 23 0 198 171 0 0 chr1 214468990 214469031 -28195322 + (TA)n Simple_repeat Simple_repeat 2 42 0 2240 112 3 0 chr1 214469033 214469336 -28195017 - AluSx SINE Alu -8 304 1 1582 187 77 62 chr1 214469454 214469924 -28194429 - MER34C LTR ERV1 -72 513 37 2278 109 0 31 chr1 214470451 214470772 -28193581 - AluSx SINE Alu -1 311 1 757 312 51 4 chr1 214470851 214471085 -28193268 + MLT1K LTR MaLR 333 577 -11 2130 127 27 0 chr1 214471305 214471605 -28192748 - AluSx SINE Alu -4 308 1 744 250 66 9 chr1 214472743 214472971 -28191382 + LTR33A LTR ERVL 270 510 -13 549 342 78 39 chr1 214472997 214473485 -28190868 + L2 LINE L2 2807 3313 0 879 204 6 6 chr1 214473513 214473680 -28190673 - MER5B DNA MER1_type -1 177 11 185 156 0 22 chr1 214473711 214473756 -28190597 + (TG)n Simple_repeat Simple_repeat 1 44 0 206 262 0 0 chr1 214473909 214473951 -28190402 + L3 LINE CR1 1521 1562 -15 441 0 0 0 chr1 214474766 214474815 -28189538 + (TG)n Simple_repeat Simple_repeat 1 49 0 288 0 0 0 chr1 214475168 214475200 -28189153 + (TG)n Simple_repeat Simple_repeat 2 33 0 1972 135 44 0 chr1 214475291 214475588 -28188765 + AluSg SINE Alu 1 310 0 426 179 13 0 chr1 214476420 214476498 -28187855 - L2 LINE L2 -12 3260 3182 750 289 44 16 chr1 214476961 214477362 -28186991 - L2 LINE L2 -133 3180 2767 1346 186 90 32 chr1 214477918 214478262 -28186091 - MLT1A1 LTR MaLR -1 364 1 189 284 86 68 chr1 214478621 214478783 -28185570 - L3 LINE CR1 -17 1560 1396 357 218 73 27 chr1 214478917 214479027 -28185326 - MER103 DNA DNA -47 119 5 904 277 120 32 chr1 214479073 214479572 -28184781 - L3 LINE CR1 -176 1401 859 577 278 16 16 chr1 214480096 214480287 -28184066 - MER117 DNA MER1_type -3 194 4 784 275 26 4 chr1 214480448 214480677 -28183676 + MIR SINE MIR 12 245 -17 302 244 109 54 chr1 214484398 214484463 -28179890 + L1MC4a LINE L1 5699 5759 -2049 1740 194 78 11 chr1 214484463 214484834 -28179519 - MSTD LTR MaLR 0 396 1 302 244 109 54 chr1 214484834 214484989 -28179364 + L1MC4a LINE L1 5759 5931 -1877 230 224 119 15 chr1 214485301 214485368 -28178985 - LTR67 LTR ERVL 0 557 484 233 313 0 0 chr1 214486150 214486217 -28178136 + MIR3 SINE MIR 122 188 -20 1232 211 20 76 chr1 214486492 214486866 -28177487 - MLT2D LTR ERVL 0 414 66 1823 142 24 27 chr1 214486878 214487174 -28177179 + AluSx SINE Alu 1 295 -17 441 0 0 0 chr1 214487219 214487268 -28177085 + (TG)n Simple_repeat Simple_repeat 2 50 0 1748 142 0 81 chr1 214487268 214487578 -28176775 - AluJb SINE Alu -27 285 1 564 332 16 16 chr1 214487659 214487903 -28176450 + L2 LINE L2 2553 2796 -518 2360 87 0 7 chr1 214488040 214488339 -28176014 - AluSx SINE Alu -15 297 1 207 100 0 0 chr1 214488422 214488452 -28175901 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 371 204 11 32 chr1 214488452 214488545 -28175808 - L2 LINE L2 -11 3302 3212 244 303 67 22 chr1 214488894 214488983 -28175370 + L2 LINE L2 3158 3250 -22 3928 111 47 98 chr1 214489812 214490449 -28173904 - LTR1 LTR ERV1 0 785 198 2513 58 10 10 chr1 214490449 214490760 -28173593 - AluY SINE Alu 0 311 1 3928 111 47 98 chr1 214490760 214490949 -28173404 - LTR1 LTR ERV1 -587 198 1 2606 118 3 3 chr1 214491051 214491415 -28172938 + THE1B LTR MaLR 1 364 0 224 279 15 15 chr1 214491524 214491592 -28172761 + GA-rich Low_complexity Low_complexity 1 68 0 621 200 100 80 chr1 214492245 214492445 -28171908 + MER63A DNA MER1_type 1 204 -6 481 289 25 55 chr1 214492445 214492510 -28171843 - MIR SINE MIR -46 216 151 1277 225 104 40 chr1 214492510 214492742 -28171611 - LTR2 LTR ERV1 0 449 233 249 33 0 0 chr1 214492742 214492772 -28171581 + (CAGAA)n Simple_repeat Simple_repeat 4 33 0 1277 225 104 40 chr1 214492772 214492961 -28171392 - LTR2 LTR ERV1 -216 233 1 481 289 25 55 chr1 214492961 214493096 -28171257 - MIR SINE MIR -111 151 22 303 122 0 0 chr1 214493641 214493690 -28170663 + (CA)n Simple_repeat Simple_repeat 2 50 0 3077 234 95 56 chr1 214495654 214495822 -28168531 - L1M4c LINE L1 -4543 2103 1943 1595 226 7 0 chr1 214495822 214496114 -28168239 - AluJb SINE Alu -17 295 2 3077 234 95 56 chr1 214496114 214496484 -28167869 - L1M4c LINE L1 -4703 1943 1589 186 43 0 0 chr1 214496484 214496507 -28167846 + (TC)n Simple_repeat Simple_repeat 2 24 0 3077 234 95 56 chr1 214496507 214497047 -28167306 - L1M4c LINE L1 -5057 1589 1072 2304 116 3 0 chr1 214497047 214497357 -28166996 - AluSp SINE Alu -2 311 1 3077 234 95 56 chr1 214497357 214498267 -28166086 - L1M4c LINE L1 -5574 1072 16 279 392 13 25 chr1 214500091 214500249 -28164104 - L2 LINE L2 -219 3053 2898 284 68 0 23 chr1 214501529 214501573 -28162780 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 1253 28 22 17 chr1 214501573 214501751 -28162602 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1902 150 0 4 chr1 214501760 214502040 -28162313 - AluSx SINE Alu -33 279 1 2569 174 11 47 chr1 214502233 214502763 -28161590 - L1MB8 LINE L1 -17 6161 5651 432 188 40 0 chr1 214502848 214502949 -28161404 + L1MC3 LINE L1 7003 7107 -678 265 268 0 14 chr1 214502960 214503031 -28161322 + MLT1F1 LTR MaLR 56 125 -442 3316 151 46 0 chr1 214503031 214503595 -28160758 + L1MC3 LINE L1 7189 7778 -7 255 264 76 76 chr1 214503755 214503899 -28160454 + MIR3 SINE MIR 19 162 -46 1309 251 122 44 chr1 214503932 214504183 -28160170 + L2 LINE L2 2427 2657 -656 2065 107 0 24 chr1 214504183 214504532 -28159821 + AluSx SINE Alu 1 342 0 1309 251 122 44 chr1 214504532 214505095 -28159258 + L2 LINE L2 2657 3308 -5 327 343 52 8 chr1 214505381 214505515 -28158838 + L2 LINE L2 3122 3261 -11 218 224 82 0 chr1 214505715 214505764 -28158589 + MIR SINE MIR 47 99 -109 280 270 10 70 chr1 214505817 214505917 -28158436 - MIR SINE MIR -167 95 2 194 286 26 26 chr1 214506064 214506141 -28158212 + MIR SINE MIR 165 241 -21 2431 145 0 47 chr1 214506194 214506601 -28157752 - L1PB4 LINE L1 0 6156 5769 1116 222 33 19 chr1 214506628 214506993 -28157360 + MER69 DNA AcHobo 1578 1947 -579 1555 101 0 57 chr1 214507100 214507328 -28157025 - AluSc SINE Alu -13 296 82 15103 192 20 17 chr1 214507332 214508994 -28155359 - L1PA16 LINE L1 0 6869 5214 2256 125 3 0 chr1 214508994 214509306 -28155047 - AluSq SINE Alu 0 313 1 15103 192 20 17 chr1 214509306 214512654 -28151699 - L1PA16 LINE L1 -1655 5214 1852 598 284 91 18 chr1 214513094 214513336 -28151017 + MIR SINE MIR 4 260 -2 244 330 19 47 chr1 214513326 214513432 -28150921 - L3 LINE CR1 -406 1171 1069 * 255 31 0 0 chr1 214514803 214514835 -28149518 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 136 0 0 chr1 214515168 214515212 -28149141 + (TG)n Simple_repeat Simple_repeat 1 44 0 2532 232 115 42 chr1 214515253 214516278 -28148075 + L1MDa LINE L1 30 1249 -5291 982 189 94 5 chr1 214517348 214517549 -28146804 - AluJo SINE Alu -7 305 87 570 235 144 46 chr1 214518244 214518550 -28145803 + L1ME4a LINE L1 5523 5858 -263 22 0 0 0 chr1 214518749 214518771 -28145582 + AT_rich Low_complexity Low_complexity 1 22 0 237 298 12 71 chr1 214520674 214520758 -28143595 - L2 LINE L2 -8 3305 3227 6048 71 3 0 chr1 214520759 214521502 -28142851 - MER11C LTR ERVK 0 1071 327 4044 160 42 48 chr1 214521502 214522468 -28141885 + pTR5 LTR ERV1 745 2025 -413 277 255 31 20 chr1 214522468 214522566 -28141787 + LTR30 LTR ERV1 544 642 -80 1247 134 57 0 chr1 214522567 214522761 -28141592 + LTR12 LTR ERV1 377 581 -133 2817 34 15 0 chr1 214522761 214523088 -28141265 - MER11C LTR ERVK -739 332 1 1930 144 0 43 chr1 214523298 214523624 -28140729 - AluJb SINE Alu 0 312 1 2352 129 71 5 chr1 214523694 214524090 -28140263 + MSTA LTR MaLR 1 422 -6 445 170 137 16 chr1 214524135 214524317 -28140036 + Charlie7 DNA MER1_type 2404 2607 -5 208 288 55 55 chr1 214524520 214524593 -28139760 - MIR SINE MIR -59 149 77 1761 185 3 6 chr1 214524832 214525145 -28139208 + AluJo SINE Alu 1 312 0 307 263 8 51 chr1 214525218 214525336 -28139017 - LTR67 LTR ERVL -13 544 432 15874 134 16 23 chr1 214525640 214525810 -28138543 + Tigger1 DNA MER2_type 1 171 -2247 1917 155 3 25 chr1 214525810 214526126 -28138227 - AluJo SINE Alu -3 309 1 15874 134 16 23 chr1 214526126 214526577 -28137776 + Tigger1 DNA MER2_type 171 623 -1795 2048 143 3 0 chr1 214526577 214526863 -28137490 + AluSx SINE Alu 1 287 -25 15874 134 16 23 chr1 214526863 214528672 -28135681 + Tigger1 DNA MER2_type 623 2417 -1 289 267 44 52 chr1 214528697 214528832 -28135521 + MIR SINE MIR 129 262 0 2132 126 3 0 chr1 214529060 214529361 -28134992 - AluSg SINE Alu -8 302 1 494 345 6 6 chr1 214531873 214532041 -28132312 - L2 LINE L2 0 3313 3146 2020 99 10 43 chr1 214532936 214533240 -28131113 + AluSx SINE Alu 1 294 -18 1927 182 95 13 chr1 214533311 214533691 -28130662 + MSTB LTR MaLR 16 426 0 303 319 0 50 chr1 214534545 214534664 -28129689 + L2 LINE L2 3195 3307 -6 372 344 122 36 chr1 214534743 214534963 -28129390 - L2 LINE L2 -2065 1249 1049 1862 163 0 13 chr1 214534963 214535263 -28129090 + AluJo SINE Alu 3 298 -14 372 344 122 36 chr1 214535263 214535673 -28128680 - L2 LINE L2 -2265 1049 565 525 326 13 30 chr1 214535683 214535916 -28128437 - LTR16C LTR ERVL -11 480 252 231 36 0 0 chr1 214536551 214536579 -28127774 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 315 0 0 0 chr1 214536578 214536613 -28127740 + (TG)n Simple_repeat Simple_repeat 1 35 0 2177 203 101 29 chr1 214537034 214537586 -28126767 - MLT1E LTR MaLR -1 592 1 499 294 94 55 chr1 214537879 214538188 -28126165 - MLT1J LTR MaLR -156 355 35 25 0 0 0 chr1 214538648 214538673 -28125680 + AT_rich Low_complexity Low_complexity 1 25 0 367 313 0 0 chr1 214539544 214539656 -28124697 - MIR SINE MIR -1 261 150 1987 133 0 3 chr1 214539664 214539950 -28124403 + AluSx SINE Alu 9 293 -19 234 326 126 11 chr1 214540060 214540155 -28124198 - MIR SINE MIR -136 126 21 351 295 60 60 chr1 214540322 214540488 -28123865 - L2 LINE L2 0 3272 3107 877 341 49 13 chr1 214540808 214541260 -28123093 - L2 LINE L2 -555 2759 2292 292 234 23 78 chr1 214541692 214541820 -28122533 + L1ME4a LINE L1 5951 6071 -50 526 183 412 0 chr1 214543011 214543164 -28121189 + MER20 DNA MER1_type 4 219 0 262 307 143 14 chr1 214543496 214543636 -28120717 + MER5B DNA MER1_type 21 178 0 470 261 25 25 chr1 214544234 214544353 -28120000 + MIR3 SINE MIR 88 206 -2 299 325 51 0 chr1 214544756 214544873 -28119480 - L2 LINE L2 0 3272 3150 312 285 90 28 chr1 214546433 214546577 -28117776 - MIR SINE MIR -79 183 31 391 242 117 17 chr1 214546633 214546753 -28117600 - L2 LINE L2 0 3313 3182 6614 84 18 0 chr1 214547271 214548322 -28116031 - L1PA10 LINE L1 -17 6151 5071 1951 147 17 23 chr1 214548908 214549207 -28115146 + AluJo SINE Alu 1 297 -15 2148 121 36 12 chr1 214549674 214550006 -28114347 - MER2 DNA MER2_type -5 340 1 5079 89 13 0 chr1 214551116 214551821 -28112532 + L1MA2 LINE L1 5591 6304 0 576 288 31 35 chr1 214551978 214552046 -28112307 - MIR SINE MIR -2 260 193 2731 139 31 35 chr1 214552046 214552558 -28111795 + LTR54 LTR ERV1 1 510 0 576 288 31 35 chr1 214552558 214552718 -28111635 - MIR SINE MIR -69 193 33 234 242 133 58 chr1 214553329 214553449 -28110904 - MER5A DNA MER1_type -2 187 59 232 228 281 18 chr1 214553362 214553476 -28110877 + MER5A DNA MER1_type 46 189 0 * 471 231 18 77 chr1 214554978 214555147 -28109206 - MER69 DNA AcHobo -17 2509 2 282 29 0 0 chr1 214556069 214556104 -28108249 + (TG)n Simple_repeat Simple_repeat 1 35 0 201 39 0 0 chr1 214556103 214556129 -28108224 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 491 279 109 26 chr1 214556438 214556667 -28107686 + MIR SINE MIR 15 262 0 944 147 46 3 chr1 214556744 214556922 -28107431 - L1M1 LINE L1 -454 5714 5554 2233 120 0 22 chr1 214557382 214557699 -28106654 - AluSx SINE Alu -2 310 1 599 224 39 50 chr1 214557739 214557872 -28106481 - MLT2F LTR ERVL 0 663 531 210 91 0 0 chr1 214557872 214557905 -28106448 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 599 224 39 50 chr1 214557905 214557950 -28106403 - MLT2F LTR ERVL -132 531 487 1802 218 62 81 chr1 214557959 214558504 -28105849 + MLT1F LTR MaLR 8 542 0 * 1931 255 18 26 chr1 214558504 214558997 -28105356 - MLT2F LTR ERVL -173 490 2 435 246 14 29 chr1 214559689 214559827 -28104526 - MIR SINE MIR 0 262 127 652 265 147 62 chr1 214559830 214560165 -28104188 + MLT1J2 LTR MaLR 5 383 -63 1176 268 98 7 chr1 214561551 214561958 -28102395 + MLT1J2 LTR MaLR 4 447 -3 229 278 42 0 chr1 214561958 214562030 -28102323 - MIR SINE MIR -134 128 54 292 301 25 91 chr1 214562036 214562235 -28102118 + MER5A DNA MER1_type 2 187 -2 627 214 0 0 chr1 214562297 214562414 -28101939 + MER94 DNA DNA 1 117 -17 2511 129 55 79 chr1 214562919 214563390 -28100963 + LTR32 LTR ERVL 12 471 0 353 121 17 0 chr1 214563607 214563665 -28100688 - MADE1 DNA Mariner 0 80 22 282 167 0 0 chr1 214563809 214563851 -28100502 - MADE1 DNA Mariner -38 42 1 383 233 125 25 chr1 214564085 214564205 -28100148 + MER5A DNA MER1_type 37 168 -21 257 367 0 0 chr1 214564713 214564811 -28099542 - L2 LINE L2 -1 3271 3174 1570 177 31 127 chr1 214564881 214565339 -28099014 + MLT2D LTR ERVL 1 414 0 2248 121 0 0 chr1 214565833 214566131 -28098222 - AluSx SINE Alu -14 298 1 466 243 59 20 chr1 214566311 214566463 -28097890 + MIR SINE MIR 68 225 -37 907 173 73 17 chr1 214566857 214567036 -28097317 - MER5A DNA MER1_type 0 189 1 2266 113 0 3 chr1 214567931 214568232 -28096121 - AluSx SINE Alu -12 300 1 265 121 52 0 chr1 214568603 214568661 -28095692 - HAL1 LINE L1 -428 2079 2019 826 259 162 29 chr1 214568772 214569216 -28095137 - HAL1 LINE L1 -690 1817 1315 2111 119 11 0 chr1 214569216 214569502 -28094851 + AluSq SINE Alu 1 289 -24 1203 174 43 16 chr1 214570318 214570525 -28093828 + MLT1A1 LTR MaLR 1 254 -111 7378 130 55 20 chr1 214570525 214571760 -28092593 + MER52C LTR ERV1 1 1278 0 1203 174 43 16 chr1 214571760 214571876 -28092477 + MLT1A1 LTR MaLR 254 365 0 229 328 41 12 chr1 214571952 214572123 -28092230 - L1MC/D LINE L1 -1880 5928 5753 327 304 92 0 chr1 214572284 214572491 -28091862 - L1MC/D LINE L1 -662 5500 5275 355 256 128 41 chr1 214572513 214572932 -28091421 - L1M LINE L1 -804 5358 4903 261 303 92 23 chr1 214573080 214573298 -28091055 + L1 LINE L1 3253 3485 -2661 6613 69 13 65 chr1 214573397 214575281 -28089072 - SVA Other Other -551 1382 1 454 48 0 0 chr1 214575283 214575345 -28089008 - AluY SINE Alu -10 302 241 317 121 15 30 chr1 214575345 214575411 -28088942 - LTR1 LTR ERV1 -720 65 1 315 29 0 0 chr1 214575526 214575561 -28088792 - MER52C LTR ERV1 -151 1127 1093 2503 75 0 7 chr1 214576174 214576481 -28087872 + AluSq SINE Alu 1 305 -8 1375 168 0 0 chr1 214577128 214577348 -28087005 - AluSg/x SINE Alu -16 294 75 2057 110 7 0 chr1 214578476 214578786 -28085567 - AluSx SINE Alu 0 312 1 1408 220 78 27 chr1 214579443 214579960 -28084393 + MLT1E LTR MaLR 1 593 0 520 265 40 0 chr1 214580387 214580538 -28083815 - MIR SINE MIR -8 254 98 2538 155 34 0 chr1 214580987 214581401 -28082952 + MSTA LTR MaLR 1 428 0 4891 117 13 15 chr1 214582017 214582698 -28081655 + Tigger1 DNA MER2_type 788 1469 -949 1859 151 10 10 chr1 214582698 214583010 -28081343 + AluJb SINE Alu 1 312 0 4891 117 13 15 chr1 214583010 214583078 -28081275 + Tigger1 DNA MER2_type 1469 1536 -882 720 164 9 0 chr1 214583068 214583184 -28081169 + Tigger1 DNA MER2_type 2302 2418 0 * 1963 53 0 0 chr1 214583218 214583444 -28080909 + AluY SINE Alu 75 300 -11 2188 73 0 7 chr1 214584568 214584843 -28079510 - AluY SINE Alu -3 308 36 471 289 92 57 chr1 214585036 214585190 -28079163 + L1 LINE L1 3684 3831 -2315 1962 142 7 3 chr1 214585190 214585486 -28078867 - AluSx SINE Alu -13 299 3 471 289 92 57 chr1 214585486 214585836 -28078517 + L1 LINE L1 3831 4223 -1923 3172 148 26 6 chr1 214585836 214586377 -28077976 - L1MA4A LINE L1 -4 6299 5748 471 289 92 57 chr1 214586377 214586588 -28077765 + L1 LINE L1 4223 4425 -1721 283 217 7 16 chr1 214586598 214586697 -28077656 + L1MEd LINE L1 1266 1482 -4927 1912 163 38 0 chr1 214586698 214587018 -28077335 + MER7A DNA MER2_type 1 330 -16 262 235 15 0 chr1 214587036 214587104 -28077249 + L1MEd LINE L1 1484 1552 -5011 724 266 54 12 chr1 214587538 214587779 -28076574 + MIR SINE MIR 12 262 0 4624 144 22 47 chr1 214588250 214589658 -28074695 - pTR5 LTR ERV1 0 2438 741 2316 103 0 10 chr1 214591673 214591984 -28072369 + AluSg SINE Alu 1 308 -2 631 121 20 0 chr1 214592376 214592475 -28071878 - L1MA3 LINE L1 0 6305 6205 2126 122 12 15 chr1 214592543 214592879 -28071474 - L1MA3 LINE L1 -92 6213 5879 246 128 0 0 chr1 214593011 214593050 -28071303 + (T)n Simple_repeat Simple_repeat 1 39 0 262 198 54 63 chr1 214593855 214593966 -28070387 - MIR SINE MIR 0 262 153 2144 134 0 0 chr1 214593966 214594258 -28070095 - AluSx SINE Alu -20 292 1 261 0 0 0 chr1 214594308 214594337 -28070016 + (TA)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr1 214594564 214594588 -28069765 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2137 130 0 0 chr1 214594588 214594872 -28069481 - AluSx SINE Alu -28 284 1 1246 170 0 27 chr1 214594943 214595166 -28069187 - AluJb SINE Alu -45 267 51 213 205 0 0 chr1 214595175 214595214 -28069139 - MIR SINE MIR -4 258 220 923 206 0 11 chr1 214595217 214595401 -28068952 - FRAM SINE Alu -1 175 1 280 229 73 10 chr1 214595401 214595497 -28068856 - MIR SINE MIR -73 189 88 1263 229 15 4 chr1 214595558 214595820 -28068533 - AluJo SINE Alu -47 265 1 1049 153 4 94 chr1 214596282 214596517 -28067836 + MER20 DNA MER1_type 4 217 -2 1534 197 62 3 chr1 214597343 214597668 -28066685 + MER2 DNA MER2_type 1 344 0 1326 132 5 0 chr1 214597888 214598078 -28066275 - AluSp SINE Alu -19 294 104 240 35 0 0 chr1 214598078 214598107 -28066246 + Alu SINE Alu 71 99 -201 248 111 22 0 chr1 214598545 214598590 -28065763 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 761 241 125 13 chr1 214598596 214598820 -28065533 - MIR SINE MIR -13 249 1 206 338 12 38 chr1 214598912 214598992 -28065361 + L3 LINE CR1 1478 1555 -22 2022 152 3 0 chr1 214599066 214599369 -28064984 + AluSx SINE Alu 1 304 -8 212 324 92 78 chr1 214599534 214599818 -28064535 + L2 LINE L2 2980 3267 -5 212 291 101 0 chr1 214600250 214600329 -28064024 - MIR3 SINE MIR -109 99 13 * 280 282 18 55 chr1 214600325 214600435 -28063918 + L2 LINE L2 2986 3091 -181 1158 141 0 11 chr1 214601823 214602000 -28062353 + AluJb SINE Alu 125 299 -13 1527 126 0 0 chr1 214603178 214603417 -28060936 + L1MB3 LINE L1 5943 6181 -2 1735 142 3 67 chr1 214603425 214603756 -28060597 + AluSx SINE Alu 1 310 -2 292 289 67 0 chr1 214603952 214604056 -28060297 - MLT1H LTR MaLR -249 300 190 965 256 49 4 chr1 214604272 214604518 -28059835 + MIR SINE MIR 6 262 0 449 229 64 21 chr1 214604629 214604769 -28059584 - L3b LINE CR1 -190 1393 1248 3122 146 78 68 chr1 214604940 214605847 -28058506 + MER11A LTR ERVK 351 1266 0 2990 192 52 6 chr1 214605848 214606884 -28057469 - L1MB4 LINE L1 -251 5929 4845 675 215 0 0 chr1 214606885 214607015 -28057338 + FLAM_A SINE Alu 1 130 -3 1007 266 164 34 chr1 214607028 214607786 -28056567 - HAL1 LINE L1 -963 1544 689 364 149 16 25 chr1 214608038 214608159 -28056194 + (TA)n Simple_repeat Simple_repeat 2 121 0 453 243 50 20 chr1 214608953 214609105 -28055248 + MLT1J LTR MaLR 31 224 -272 294 179 0 0 chr1 214609509 214609565 -28054788 + A-rich Low_complexity Low_complexity 2 57 0 712 219 63 30 chr1 214609566 214609836 -28054517 + MLT1J LTR MaLR 212 490 -21 245 336 7 34 chr1 214610979 214611125 -28053228 - L2 LINE L2 -183 3089 2948 211 194 69 56 chr1 214611184 214611256 -28053097 - MIR SINE MIR -49 213 141 192 322 168 39 chr1 214612024 214612412 -28051941 + L2 LINE L2 2809 3246 -26 2327 152 58 6 chr1 214614314 214614781 -28049572 - L1MB3 LINE L1 -1 6182 5692 451 302 79 14 chr1 214614981 214615196 -28049157 - L1ME4a LINE L1 -145 5976 5748 304 224 97 112 chr1 214615216 214615412 -28048941 - L1ME LINE L1 -327 5794 5602 3706 146 39 23 chr1 214616067 214616767 -28047586 - MER50 LTR ERV1 -23 711 1 807 300 25 67 chr1 214616891 214617251 -28047102 - LTR16A LTR ERVL 0 450 106 4182 150 78 37 chr1 214617444 214617901 -28046452 - MER4D LTR ERV1 0 903 466 2245 104 7 0 chr1 214617901 214618199 -28046154 + AluSg SINE Alu 1 300 -10 4182 150 78 37 chr1 214618199 214618608 -28045745 - MER4D LTR ERV1 -437 466 1 1520 141 17 22 chr1 214618708 214619049 -28045304 + MER61C LTR ERV1 1 434 0 338 336 70 8 chr1 214619245 214619373 -28044980 - L2 LINE L2 0 3272 3137 585 265 25 78 chr1 214619929 214620133 -28044220 + L2 LINE L2 3120 3312 -1 213 326 11 56 chr1 214622036 214622125 -28042228 - L2 LINE L2 -81 3191 3107 279 261 96 64 chr1 214622967 214623019 -28041334 - MIR SINE MIR -14 248 199 879 206 23 6 chr1 214623019 214623194 -28041159 + MER45A DNA AcHobo 1 178 0 279 261 96 64 chr1 214623194 214623298 -28041055 - MIR SINE MIR -63 199 87 310 318 152 13 chr1 214623390 214623541 -28040812 + MER5A DNA MER1_type 15 186 -3 300 262 43 30 chr1 214623552 214623655 -28040698 + MER112 DNA MER1_type 1 108 -152 2248 109 0 0 chr1 214623655 214623949 -28040404 + AluSx SINE Alu 1 294 -18 300 262 43 30 chr1 214623949 214624009 -28040344 + MER112 DNA MER1_type 108 166 -94 927 105 16 0 chr1 214624476 214624600 -28039753 - AluSq/x SINE Alu -187 126 1 267 277 84 34 chr1 214625379 214625498 -28038855 + MER5C DNA MER1_type 1 125 -199 683 209 82 0 chr1 214625582 214625778 -28038575 + MER5C DNA MER1_type 110 321 -3 275 164 82 55 chr1 214626066 214626139 -28038214 - MIR SINE MIR -93 169 95 365 386 43 5 chr1 214626805 214626989 -28037364 + L2 LINE L2 2865 3055 -217 198 247 164 0 chr1 214627261 214627334 -28037019 + MIR SINE MIR 163 247 -15 8327 123 26 1 chr1 214627554 214628871 -28035482 + Tigger1 DNA MER2_type 1 1349 -1069 324 355 32 32 chr1 214728872 214729058 -27935295 - L1 LINE L1 -1184 4962 4777 511 299 62 41 chr1 214729120 214729366 -27934987 - L1 LINE L1 -1481 4665 4409 2188 101 0 7 chr1 214729366 214729653 -27934700 - AluSx SINE Alu -21 291 7 511 299 62 41 chr1 214729653 214729747 -27934606 - L1 LINE L1 -1737 4409 4318 213 121 0 0 chr1 214729805 214729838 -27934515 + (A)n Simple_repeat Simple_repeat 1 33 0 183 42 0 0 chr1 214729994 214730018 -27934335 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1922 137 0 14 chr1 214730242 214730519 -27933834 - AluSc SINE Alu -36 273 1 1989 272 47 29 chr1 214730521 214731423 -27932930 - L1M4 LINE L1 -1643 4503 3586 1696 180 3 11 chr1 214732186 214732497 -27931856 - AluJb SINE Alu 0 309 1 390 287 30 0 chr1 214732544 214732645 -27931708 + L2 LINE L2 2941 3044 -269 282 116 0 0 chr1 214732842 214732885 -27931468 + (A)n Simple_repeat Simple_repeat 1 43 0 228 327 27 27 chr1 214733346 214733456 -27930897 + L2 LINE L2 3002 3111 -161 192 322 0 0 chr1 214733981 214734040 -27930313 - L2 LINE L2 0 3313 3255 225 0 0 0 chr1 214734636 214734661 -27929692 + (TG)n Simple_repeat Simple_repeat 1 25 0 250 353 50 20 chr1 214734789 214734990 -27929363 - L2 LINE L2 -585 2729 2523 213 258 15 15 chr1 214736044 214736110 -27928243 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 235 282 0 0 chr1 214736142 214736213 -27928140 + MLT1I LTR MaLR 70 140 -269 1944 140 0 7 chr1 214736420 214736713 -27927640 + AluSx SINE Alu 1 291 -21 1426 240 121 69 chr1 214736716 214737980 -27926373 + HAL1 LINE L1 970 2299 -208 1895 74 93 0 chr1 214738751 214739051 -27925302 + AluY SINE Alu 1 324 0 1600 205 11 25 chr1 214739110 214739466 -27924887 + MLT2D LTR ERVL 4 354 -60 314 279 7 22 chr1 214739500 214739636 -27924717 + (TA)n Simple_repeat Simple_repeat 1 134 0 207 0 0 0 chr1 214739636 214739659 -27924694 + (TG)n Simple_repeat Simple_repeat 2 24 0 267 105 0 0 chr1 214739665 214739703 -27924650 + MLT2D LTR ERVL 427 464 0 223 319 7 121 chr1 214740634 214740675 -27923678 + L2 LINE L2 3145 3189 -83 2152 95 3 29 chr1 214740675 214740981 -27923372 - AluSx SINE Alu -14 298 1 223 319 7 121 chr1 214740981 214741080 -27923273 + L2 LINE L2 3189 3269 -3 810 123 2 118 chr1 214742266 214742452 -27921901 + L1PA15 LINE L1 5848 6010 -146 2017 124 0 56 chr1 214742452 214742774 -27921579 + AluSx SINE Alu 1 304 -8 810 123 2 118 chr1 214742774 214742794 -27921559 + L1PA15 LINE L1 6010 6031 -125 292 146 12 49 chr1 214742812 214742894 -27921459 + L1MB8 LINE L1 6100 6178 0 474 236 122 8 chr1 214742937 214743060 -27921293 - MIR SINE MIR -113 149 13 279 326 98 0 chr1 214743050 214743182 -27921171 + MIR SINE MIR 103 247 -15 * 1975 144 3 44 chr1 214743749 214744088 -27920265 + MER1B DNA MER1_type 14 338 -1 22 35 0 0 chr1 214744515 214744544 -27919809 + AT_rich Low_complexity Low_complexity 1 29 0 245 228 31 31 chr1 214744544 214744671 -27919682 + L1ME4a LINE L1 5984 6110 -11 660 143 29 14 chr1 214745324 214745464 -27918889 + MER53 DNA DNA 2 143 -46 1355 280 83 26 chr1 214746498 214747076 -27917277 - MLT2F LTR ERVL -5 658 48 198 354 13 0 chr1 214747128 214747207 -27917146 + MIR SINE MIR 60 139 -69 255 172 17 17 chr1 214749875 214749933 -27914420 + CT-rich Low_complexity Low_complexity 1 58 0 37590 86 16 12 chr1 214753010 214759114 -27905239 + L1PA5 LINE L1 11 6152 -2 1865 261 94 1 chr1 214759135 214759776 -27904577 + L2 LINE L2 2429 3126 -187 3529 184 39 43 chr1 214759779 214760695 -27903658 - L1MB3 LINE L1 -3 6180 5268 216 248 23 108 chr1 214760695 214760824 -27903529 + L2 LINE L2 3107 3224 -89 290 303 10 20 chr1 214760924 214761023 -27903330 + L2 LINE L2 3154 3251 -21 2809 213 62 75 chr1 214761077 214762694 -27901659 - L1ME1 LINE L1 -48 6929 5206 2159 161 58 22 chr1 214762694 214763111 -27901242 + MSTB1 LTR MaLR 1 432 0 2809 213 62 75 chr1 214763111 214763295 -27901058 - L1ME1 LINE L1 -1771 5206 5021 1828 255 48 8 chr1 214763294 214764081 -27900272 - L1ME1 LINE L1 -3450 3507 2680 * 410 315 65 54 chr1 214764319 214764595 -27899758 - L1ME1 LINE L1 -6561 298 20 283 345 80 47 chr1 214764874 214765149 -27899204 + L3b LINE CR1 1277 1560 -23 384 272 26 0 chr1 214766156 214766270 -27898083 + MIR SINE MIR 136 252 -10 472 226 35 0 chr1 214766697 214766812 -27897541 + MLT2C1 LTR ERVL 1 119 -278 376 54 0 18 chr1 214766812 214766868 -27897485 - MADE1 DNA Mariner -1 79 25 776 170 152 0 chr1 214766875 214767046 -27897307 + MLT2C1 LTR ERVL 119 315 -82 623 286 149 8 chr1 214767289 214767551 -27896802 - L2 LINE L2 0 3313 3015 23 0 0 0 chr1 214767582 214767605 -27896748 + AT_rich Low_complexity Low_complexity 1 23 0 2219 101 7 0 chr1 214767671 214767959 -27896394 + AluY SINE Alu 1 290 -21 532 283 150 0 chr1 214767969 214768142 -27896211 - MIR SINE MIR 0 262 64 279 294 15 15 chr1 214768341 214768477 -27895876 - MLT1L LTR MaLR -336 279 144 5167 98 12 3 chr1 214770401 214771149 -27893204 + L1PA13 LINE L1 5408 6162 -1 886 260 145 31 chr1 214771256 214771648 -27892705 + Charlie2 DNA MER1_type 5 441 -2341 1868 278 96 64 chr1 214771860 214773204 -27891149 + Charlie2a DNA MER1_type 1475 2861 -1 379 264 74 8 chr1 214773358 214773479 -27890874 - L2 LINE L2 -2 3270 3142 2549 145 42 30 chr1 214773602 214774047 -27890306 + L1MB3 LINE L1 5680 6133 -50 2086 74 0 0 chr1 214774047 214774304 -27890049 + AluSc SINE Alu 30 286 -23 2549 145 42 30 chr1 214774304 214774356 -27889997 + L1MB3 LINE L1 6133 6183 0 222 365 60 12 chr1 214775106 214775273 -27889080 - MIR3 SINE MIR -12 196 22 399 41 0 0 chr1 214776164 214776213 -27888140 + (TG)n Simple_repeat Simple_repeat 2 50 0 306 267 15 7 chr1 214776347 214776482 -27887871 + GA-rich Low_complexity Low_complexity 3 138 0 21 0 0 0 chr1 214777738 214777759 -27886594 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1 214777948 214777975 -27886378 + AT_rich Low_complexity Low_complexity 1 27 0 306 249 99 22 chr1 214778470 214778651 -27885702 + L1ME LINE L1 5255 5449 -2359 267 301 178 0 chr1 214778726 214778872 -27885481 + L2 LINE L2 2549 2720 -594 641 252 48 65 chr1 214778880 214779110 -27885243 + MIR SINE MIR 33 258 -4 545 291 110 16 chr1 214779146 214779495 -27884858 + L2 LINE L2 2715 3093 -220 526 297 24 0 chr1 214779508 214779717 -27884636 + L1ME LINE L1 5545 5758 -363 616 230 18 24 chr1 214779721 214779886 -27884467 - MLT1H LTR MaLR -3 546 383 2463 85 0 0 chr1 214779901 214780207 -27884146 + AluY SINE Alu 1 306 -5 1085 247 8 12 chr1 214780208 214780463 -27883890 - MLT1H LTR MaLR -283 266 13 496 166 38 32 chr1 214780560 214780717 -27883636 + CT-rich Low_complexity Low_complexity 4 161 0 607 203 27 7 chr1 214780855 214781003 -27883350 - MLT1H LTR MaLR -398 151 1 266 104 0 21 chr1 214781885 214781933 -27882420 + (TCTCCC)n Simple_repeat Simple_repeat 3 49 0 199 260 20 20 chr1 214782190 214782240 -27882113 - L2 LINE L2 -14 3299 3250 4047 95 189 48 chr1 214782328 214783052 -27881301 - LTR12 LTR ERV1 0 826 1 378 189 27 9 chr1 214783242 214783353 -27881000 + GA-rich Low_complexity Low_complexity 4 116 0 318 243 0 0 chr1 214783810 214783913 -27880440 + (TA)n Simple_repeat Simple_repeat 2 104 0 321 310 55 7 chr1 214783913 214784058 -27880295 + L1MEd LINE L1 598 749 -5370 240 213 0 0 chr1 214784058 214784119 -27880234 + (TA)n Simple_repeat Simple_repeat 1 61 0 803 301 76 24 chr1 214784131 214784672 -27879681 - L1MEd LINE L1 -5038 1081 513 341 313 74 92 chr1 214784752 214785036 -27879317 - L1MEd LINE L1 -5839 280 2 21 0 0 0 chr1 214785215 214785236 -27879117 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr1 214785293 214785324 -27879029 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 214785660 214785681 -27878672 + AT_rich Low_complexity Low_complexity 1 21 0 385 246 144 24 chr1 214786193 214786360 -27877993 + MIR SINE MIR 72 258 -4 296 314 58 33 chr1 214786371 214786492 -27877861 - L2 LINE L2 -11 3302 3179 318 350 10 0 chr1 214786500 214786603 -27877750 + L2 LINE L2 3197 3300 -13 22 70 0 0 chr1 214786637 214786680 -27877673 + AT_rich Low_complexity Low_complexity 1 43 0 186 244 13 90 chr1 214786831 214786909 -27877444 + MIR SINE MIR 118 189 -73 2425 62 0 3 chr1 214786929 214787236 -27877117 + AluY SINE Alu 1 306 -5 890 228 35 10 chr1 214787334 214787536 -27876817 - MIR SINE MIR -21 241 35 1980 188 32 28 chr1 214789353 214789902 -27874451 - MLT2A2 LTR ERVL 0 554 1 214 401 36 0 chr1 214790132 214790269 -27874084 + MIR3 SINE MIR 8 149 -59 2316 81 3 31 chr1 214790500 214790822 -27873531 + AluSq SINE Alu 1 313 0 4128 127 28 7 chr1 214791072 214791788 -27872565 + L1MA8 LINE L1 5559 6289 -2 446 373 104 17 chr1 214791830 214792184 -27872169 + L1ME2 LINE L1 417 801 -5920 324 305 85 0 chr1 214792605 214792782 -27871571 + L1ME2 LINE L1 925 1116 -5326 799 295 102 28 chr1 214792934 214793655 -27870698 + L1ME2 LINE L1 1454 2276 -4445 * 2173 248 23 20 chr1 214793631 214794329 -27870024 + L1ME2 LINE L1 5859 6558 0 660 248 118 42 chr1 214794345 214794583 -27869770 + L2 LINE L2 2702 2957 -357 397 277 151 0 chr1 214794563 214794729 -27869624 + L2 LINE L2 3104 3294 -19 * 2276 34 0 58 chr1 214795781 214796074 -27868279 + AluY SINE Alu 1 276 -35 591 339 15 32 chr1 214796979 214797186 -27867167 - ERVL LTR ERVL -695 5069 4860 2481 81 0 0 chr1 214797186 214797493 -27866860 - AluSq SINE Alu -6 307 1 591 339 15 32 chr1 214797493 214797831 -27866522 - ERVL LTR ERVL -904 4860 4475 1219 287 83 25 chr1 214798046 214798651 -27865702 - ERVL LTR ERVL -1301 4463 3496 245 317 81 50 chr1 214799957 214800118 -27864235 - MIR SINE MIR -50 212 47 2148 124 0 26 chr1 214800829 214801135 -27863218 - AluSx SINE Alu -14 298 1 287 253 28 46 chr1 214801802 214801942 -27862411 - MIR3 SINE MIR 0 208 70 31 26 0 0 chr1 214801992 214802030 -27862323 + AT_rich Low_complexity Low_complexity 1 38 0 231 36 0 0 chr1 214804121 214804149 -27860204 + (TTCTCC)n Simple_repeat Simple_repeat 3 30 0 6493 69 9 0 chr1 214804152 214805518 -27858835 - L1PA7 LINE L1 -14 6455 5063 7470 111 0 2 chr1 214805518 214806710 -27857643 - L1PA7 LINE L1 -2124 4337 3149 1370 133 0 0 chr1 214806710 214806934 -27857419 - AluSg/x SINE Alu 0 310 87 12546 119 5 32 chr1 214806934 214810098 -27854255 - L1PA7 LINE L1 -3306 3155 8 1238 218 51 137 chr1 214810250 214810836 -27853517 - MLT1F LTR MaLR -6 536 1 261 0 0 0 chr1 214811259 214811288 -27853065 + (TG)n Simple_repeat Simple_repeat 2 30 0 1976 117 0 83 chr1 214811487 214811812 -27852541 + AluSp SINE Alu 3 300 -13 653 258 22 28 chr1 214813236 214813418 -27850935 - MIR SINE MIR -4 258 78 466 262 40 20 chr1 214813862 214814011 -27850342 + MIR SINE MIR 108 259 -3 317 279 120 57 chr1 214814760 214814918 -27849435 + MIR3 SINE MIR 30 197 -11 963 244 20 4 chr1 214816082 214816332 -27848021 + MER46C DNA MER2_type 73 326 -12 1226 201 4 18 chr1 214816702 214816975 -27847378 + L1MB7 LINE L1 3923 4191 -1955 5906 113 22 7 chr1 214816985 214818402 -27845951 - L1PA13 LINE L1 -5 6158 4631 456 209 23 31 chr1 214818462 214818591 -27845762 + MER63 DNA MER1_type 1 128 -802 1252 209 4 0 chr1 214818592 214818865 -27845488 - L1PA13 LINE L1 -1463 4683 4410 4474 197 40 6 chr1 214818865 214819246 -27845107 + L1MB7 LINE L1 4189 4556 -1628 7181 51 26 1 chr1 214819246 214820121 -27844232 + MER11D LTR ERVK 1 897 0 4474 197 40 6 chr1 214820121 214821656 -27842697 + L1MB7 LINE L1 4556 6171 -13 225 135 0 0 chr1 214821663 214821700 -27842653 - MER116 DNA Mariner -40 40 4 577 218 183 30 chr1 214821978 214822175 -27842178 - MIR SINE MIR -34 228 2 1203 223 91 46 chr1 214822232 214822685 -27841668 + MER63C DNA MER1_type 1 473 -457 800 164 0 8 chr1 214822690 214822824 -27841529 + FLAM_C SINE Alu 6 138 -5 185 310 190 0 chr1 214823650 214823750 -27840603 - L2 LINE L2 -1 3271 3153 717 241 72 0 chr1 214823755 214823921 -27840432 + MER5B DNA MER1_type 1 178 0 529 293 153 0 chr1 214824004 214824161 -27840192 + MER5A DNA MER1_type 9 189 0 201 390 42 0 chr1 214824161 214824249 -27840104 - L2 LINE L2 -78 3194 3103 228 114 0 0 chr1 214824610 214824654 -27839699 + L1MA8 LINE L1 6246 6289 -2 307 148 0 19 chr1 214824979 214825033 -27839320 + MER50-int LTR ERV1 7145 7197 -8 353 147 13 27 chr1 214825033 214825108 -27839245 + MER50 LTR ERV1 1 74 -660 961 213 15 0 chr1 214825190 214825387 -27838966 - MLT1B LTR MaLR -7 383 184 198 0 0 0 chr1 214825422 214825444 -27838909 + (GA)n Simple_repeat Simple_repeat 1 22 0 271 154 138 15 chr1 214825669 214825734 -27838619 - L2 LINE L2 -1 3271 3199 301 239 25 102 chr1 214826222 214826350 -27838003 - L1ME LINE L1 -549 5615 5479 1995 145 37 0 chr1 214826350 214826646 -27837707 - AluSx SINE Alu -5 307 1 301 239 25 102 chr1 214826646 214826968 -27837385 - L1ME LINE L1 -685 5479 5197 2820 13 0 3 chr1 214826971 214827287 -27837066 - AluYb8 SINE Alu -3 315 1 1753 146 20 37 chr1 214828532 214828827 -27835526 + AluJo SINE Alu 1 290 -22 31 26 0 0 chr1 214828827 214828865 -27835488 + AT_rich Low_complexity Low_complexity 1 38 0 281 359 82 20 chr1 214829190 214829385 -27834968 - LTR16A LTR ERVL -228 222 16 416 315 34 41 chr1 214829412 214829527 -27834826 - L1ME LINE L1 -1941 4205 4091 2422 54 0 10 chr1 214829527 214829823 -27834530 + AluY SINE Alu 1 293 -18 416 315 34 41 chr1 214829823 214830123 -27834230 - L1ME LINE L1 -2055 4091 3793 21 36 0 0 chr1 214830125 214830153 -27834200 + AT_rich Low_complexity Low_complexity 1 28 0 303 167 0 0 chr1 214830156 214830204 -27834149 - AluJ/FLAM SINE Alu -234 68 21 1313 199 33 4 chr1 214830204 214830445 -27833908 + AluJo SINE Alu 35 282 -30 264 30 0 0 chr1 214830446 214830479 -27833874 + (CATA)n Simple_repeat Simple_repeat 2 34 0 318 266 52 99 chr1 214830488 214830721 -27833632 - L1ME LINE L1 -2378 3768 3547 271 282 77 55 chr1 214830818 214831379 -27832974 - L1ME LINE L1 -2690 3456 2884 21 57 0 0 chr1 214831455 214831490 -27832863 + AT_rich Low_complexity Low_complexity 1 35 0 182 263 11 0 chr1 214831591 214831686 -27832667 + (TA)n Simple_repeat Simple_repeat 2 97 0 250 113 19 19 chr1 214831733 214831786 -27832567 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 22 0 0 0 chr1 214832262 214832284 -27832069 + AT_rich Low_complexity Low_complexity 1 22 0 1401 233 36 19 chr1 214832325 214832745 -27831608 + L1M4 LINE L1 3812 4238 -1908 326 284 21 5 chr1 214832955 214833149 -27831204 + L1M4 LINE L1 5148 5344 -802 1298 244 77 97 chr1 214833481 214833815 -27830538 + MLT2F LTR ERVL 5 321 -342 774 89 0 0 chr1 214833815 214833927 -27830426 + (TCC)n Simple_repeat Simple_repeat 1 112 0 1298 244 77 97 chr1 214833927 214834264 -27830089 + MLT2F LTR ERVL 321 663 0 295 334 111 50 chr1 214834787 214835203 -27829150 + L2 LINE L2 2873 3313 0 332 146 0 0 chr1 214836534 214836589 -27827764 - MLT1G1 LTR MaLR -9 586 532 668 271 81 77 chr1 214836874 214837366 -27826987 - MLT1G1 LTR MaLR -81 461 5 1863 148 3 30 chr1 214837554 214837857 -27826496 - AluJb SINE Alu -17 295 1 1937 191 48 37 chr1 214837867 214838329 -27826024 + MLT1C LTR MaLR 1 467 0 212 246 53 18 chr1 214838368 214838425 -27825928 + L2 LINE L2 1183 1241 -2073 197 253 0 12 chr1 214838536 214838619 -27825734 + CT-rich Low_complexity Low_complexity 1 82 0 1984 132 3 35 chr1 214839284 214839602 -27824751 + AluSq SINE Alu 4 311 -2 283 317 109 0 chr1 214839815 214839916 -27824437 - MIR3 SINE MIR -31 177 66 828 262 16 5 chr1 214840582 214840769 -27823584 - MER5A DNA MER1_type 0 189 1 306 288 45 9 chr1 214842543 214842654 -27821699 - MIR SINE MIR 0 262 148 361 169 0 0 chr1 214842681 214842740 -27821613 - MIR SINE MIR -94 168 110 290 163 0 0 chr1 214842763 214842812 -27821541 - L2 LINE L2 0 3313 3265 240 121 15 30 chr1 214843162 214843228 -27821125 + (CA)n Simple_repeat Simple_repeat 2 66 0 253 204 37 9 chr1 214843801 214843909 -27820444 + (CA)n Simple_repeat Simple_repeat 2 112 0 288 276 76 44 chr1 214844546 214844771 -27819582 - L1MEd LINE L1 -5292 827 596 351 275 8 0 chr1 214846014 214846134 -27818219 + L1MC4 LINE L1 7781 7901 -141 207 222 50 81 chr1 214846482 214846581 -27817772 - MIR3 SINE MIR -15 193 98 7092 202 92 25 chr1 214846824 214848736 -27815617 - L1MDa LINE L1 -4414 2126 86 240 35 0 0 chr1 214848736 214848765 -27815588 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 401 75 0 0 chr1 214848767 214848820 -27815533 - Alu SINE Alu -30 279 227 2230 90 57 0 chr1 214848886 214849218 -27815135 - L1PB1 LINE L1 -1 6150 5800 392 310 102 56 chr1 214849330 214849633 -27814720 + L1ME4a LINE L1 5804 6120 -1 523 275 89 31 chr1 214849826 214850084 -27814269 + L1M4 LINE L1 4312 4584 -1562 216 326 0 53 chr1 214850928 214851057 -27813296 - MIR SINE MIR -72 136 34 180 179 0 26 chr1 214851332 214851371 -27812982 + L2 LINE L2 685 722 -2592 312 281 21 63 chr1 214851553 214851720 -27812633 + MIR SINE MIR 37 195 -67 1694 161 7 21 chr1 214851723 214852009 -27812344 + AluJo SINE Alu 1 282 -30 421 253 188 7 chr1 214852243 214852397 -27811956 + MIR SINE MIR 2 183 -79 399 73 0 0 chr1 214853250 214853305 -27811048 + (CA)n Simple_repeat Simple_repeat 1 55 0 224 303 15 15 chr1 214856045 214856111 -27808242 - MIR3 SINE MIR -6 202 137 222 118 0 0 chr1 214856857 214856891 -27807462 + (A)n Simple_repeat Simple_repeat 1 34 0 345 204 184 0 chr1 214857068 214857171 -27807182 - L2 LINE L2 -1 3271 3150 408 63 16 32 chr1 214857220 214857283 -27807070 - L1MA3 LINE L1 -354 5951 5890 317 358 121 12 chr1 214857695 214857860 -27806493 + MIR3 SINE MIR 20 202 -6 298 152 19 48 chr1 214858629 214858734 -27805619 + CT-rich Low_complexity Low_complexity 2 103 0 893 229 90 61 chr1 214859715 214859848 -27804505 - MIR SINE MIR -10 252 106 2250 81 0 11 chr1 214859848 214860170 -27804183 + AluSg SINE Alu 1 319 0 893 229 90 61 chr1 214860170 214860280 -27804073 - MIR SINE MIR -156 106 1 205 96 0 58 chr1 214860420 214860472 -27803881 + (TTATA)n Simple_repeat Simple_repeat 5 53 0 409 240 123 31 chr1 214860476 214860639 -27803714 - MIR3 SINE MIR -47 161 32 292 326 91 15 chr1 214860732 214860864 -27803489 + L2 LINE L2 3172 3313 0 231 324 28 0 chr1 214860835 214860906 -27803447 - L2 LINE L2 -9 3263 3191 * 765 217 5 11 chr1 214861438 214861627 -27802726 - MER53 DNA DNA 0 189 2 914 181 136 9 chr1 214861856 214862077 -27802276 + MIR SINE MIR 8 256 -6 207 69 0 0 chr1 214862091 214862120 -27802233 + (CAT)n Simple_repeat Simple_repeat 2 30 0 26 0 0 0 chr1 214862984 214863010 -27801343 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 214863495 214863518 -27800835 + AT_rich Low_complexity Low_complexity 1 23 0 433 253 10 0 chr1 214863919 214864018 -27800335 + MER63 DNA MER1_type 27 752 -310 582 275 0 0 chr1 214864205 214864347 -27800006 - L1PB4 LINE L1 -2 6154 6013 351 318 126 13 chr1 214865889 214866069 -27798284 - MIR SINE MIR -56 206 9 189 388 26 0 chr1 214866186 214866302 -27798051 - MIR SINE MIR -71 137 19 351 356 113 19 chr1 214866679 214867089 -27797264 + L2 LINE L2 2561 3018 -254 1490 165 45 19 chr1 214867122 214867389 -27796964 + AluJo SINE Alu 34 307 -5 2237 72 0 34 chr1 214867389 214867710 -27796643 + AluY SINE Alu 1 311 0 21 0 0 0 chr1 214868028 214868049 -27796304 + AT_rich Low_complexity Low_complexity 1 21 0 2122 120 0 0 chr1 214868108 214868392 -27795961 - AluSx SINE Alu -28 284 1 210 232 130 14 chr1 214868468 214868537 -27795816 + L2 LINE L2 3236 3312 -1 2492 203 4 29 chr1 214869290 214869808 -27794545 + MLT1D LTR MaLR 1 505 0 1902 144 0 14 chr1 214870147 214870431 -27793922 + AluSx SINE Alu 1 280 -32 221 298 85 32 chr1 214870578 214870672 -27793681 + L2 LINE L2 2646 2744 -570 207 339 0 0 chr1 214870761 214870820 -27793533 + L2 LINE L2 3186 3244 -28 635 278 135 25 chr1 214870822 214871103 -27793250 - MLT1K LTR MaLR 0 588 277 794 287 31 28 chr1 214872495 214872749 -27791604 + MIR SINE MIR 8 262 0 1873 118 4 18 chr1 214873519 214873799 -27790554 + AluSx SINE Alu 1 276 -36 21 36 0 0 chr1 214874001 214874029 -27790324 + AT_rich Low_complexity Low_complexity 1 28 0 239 212 202 10 chr1 214874438 214874537 -27789816 + L1M4 LINE L1 4742 4859 -1287 234 91 0 0 chr1 214874537 214874570 -27789783 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 1841 180 6 3 chr1 214874580 214874891 -27789462 - AluSx SINE Alu 0 312 1 410 184 0 0 chr1 214874903 214874979 -27789374 + L1M4 LINE L1 4855 4930 -1216 21 0 0 0 chr1 214875037 214875058 -27789295 + AT_rich Low_complexity Low_complexity 1 21 0 456 249 79 54 chr1 214875151 214875505 -27788848 - L1M4 LINE L1 -2828 3318 2956 519 284 56 56 chr1 214875617 214876206 -27788147 - L1M4 LINE L1 -3418 2728 2140 2175 161 46 0 chr1 214876526 214876899 -27787454 + MLT1B LTR MaLR 1 390 0 704 318 61 20 chr1 214877158 214877718 -27786635 - HAL1 LINE L1 -847 1660 1078 284 287 56 46 chr1 214879161 214879269 -27785084 + MIR3 SINE MIR 53 161 -47 2366 140 3 6 chr1 214879399 214879764 -27784589 - THE1B LTR MaLR 0 364 1 309 214 12 12 chr1 214880148 214880232 -27784121 + L1PB4 LINE L1 6070 6153 -3 24 0 0 0 chr1 214880232 214880256 -27784097 + AT_rich Low_complexity Low_complexity 1 24 0 959 126 0 0 chr1 214880357 214880492 -27783861 + FRAM SINE Alu 20 154 -22 873 263 72 5 chr1 214881106 214881315 -27783038 - MER58A DNA MER1_type -1 223 1 216 272 208 25 chr1 214881519 214881721 -27782632 - MIR SINE MIR 0 262 24 209 369 36 0 chr1 214881781 214881865 -27782488 - L3 LINE CR1 -1033 544 458 552 315 84 33 chr1 214882833 214882893 -27781460 - LTR16C LTR ERVL 0 491 436 195 42 0 0 chr1 214882893 214882917 -27781436 + (TGG)n Simple_repeat Simple_repeat 3 26 0 552 315 84 33 chr1 214882917 214883247 -27781106 - LTR16C LTR ERVL -55 436 81 2148 116 0 0 chr1 214883445 214883762 -27780591 + AluSq SINE Alu 1 313 0 409 304 18 1 chr1 214883806 214883936 -27780417 - MIR SINE MIR -62 146 17 2211 100 0 3 chr1 214884103 214884393 -27779960 + AluSq SINE Alu 2 290 -23 301 296 0 0 chr1 214884394 214884482 -27779871 - L1MC4 LINE L1 -1346 6696 6609 251 250 0 0 chr1 214885532 214885584 -27778769 - MIR SINE MIR 0 262 211 256 269 68 5 chr1 214885628 214885723 -27778630 + L1MC3 LINE L1 825 922 -4985 994 134 73 0 chr1 214885723 214885887 -27778466 - L1PB4 LINE L1 0 6156 5981 1143 141 0 0 chr1 214885888 214886065 -27778288 + L1PB4 LINE L1 5795 5971 -185 641 149 8 258 chr1 214886070 214886426 -27777927 + L1MC3 LINE L1 921 1187 -5239 1651 204 115 17 chr1 214887643 214888617 -27775736 + L1MC3 LINE L1 1164 2331 -4095 2123 167 18 23 chr1 214888620 214889010 -27775343 + MLT1B LTR MaLR 1 388 -2 6939 262 24 43 chr1 214889016 214891548 -27772805 + L1MC3 LINE L1 2377 4810 -1616 7402 171 16 45 chr1 214891568 214894216 -27770137 - L1PA16 LINE L1 -9 6157 3564 1117 204 82 39 chr1 214894211 214894774 -27769579 + L1MC3 LINE L1 5315 5899 -780 * 894 240 140 47 chr1 214894785 214895106 -27769247 - MLT1A1 LTR MaLR -12 353 3 7883 189 56 75 chr1 214895108 214896653 -27767700 + L1MC3 LINE L1 5894 7475 -590 254 267 33 22 chr1 214896653 214896743 -27767610 + MLT1H LTR MaLR 35 125 -442 7883 189 56 75 chr1 214896743 214897323 -27767030 + L1MC3 LINE L1 7475 8065 0 792 225 90 57 chr1 214898583 214898988 -27765365 + MLT1H LTR MaLR 108 549 0 1297 242 30 38 chr1 214900038 214900406 -27763947 + MLT1A1 LTR MaLR 1 365 0 2010 111 105 33 chr1 214900500 214900607 -27763746 - MLT1B LTR MaLR -2 388 290 1610 194 52 30 chr1 214900607 214900973 -27763380 + MLT1A2 LTR MaLR 1 374 0 2010 111 105 33 chr1 214900973 214901227 -27763126 - MLT1B LTR MaLR -100 290 1 480 294 77 49 chr1 214903840 214904126 -27760227 + L2 LINE L2 3008 3301 -12 401 308 64 13 chr1 214904875 214905031 -27759322 + MIR SINE MIR 35 198 -64 26 0 0 0 chr1 214905164 214905190 -27759163 + AT_rich Low_complexity Low_complexity 1 26 0 387 0 0 0 chr1 214905322 214905365 -27758988 + (TAA)n Simple_repeat Simple_repeat 2 44 0 421 292 227 29 chr1 214905493 214905876 -27758477 - MLT1H LTR MaLR -32 517 59 4735 249 69 39 chr1 214906156 214909467 -27754886 + L1ME1 LINE L1 38 3421 -2794 910 209 43 20 chr1 214909515 214909768 -27754585 + L1ME1 LINE L1 4643 4901 -1314 452 274 7 0 chr1 214909779 214909925 -27754428 + L1ME1 LINE L1 5036 5182 -1033 280 140 0 0 chr1 214909975 214910025 -27754328 + L1ME1 LINE L1 5209 5258 -957 711 198 8 0 chr1 214910026 214910152 -27754201 + FLAM_C SINE Alu 1 127 -16 3047 225 72 22 chr1 214910161 214911105 -27753248 + L1ME1 LINE L1 5239 6228 -7 609 208 28 39 chr1 214911159 214911337 -27753016 - Charlie1 DNA MER1_type -1 2760 2585 253 240 160 0 chr1 214911338 214911413 -27752940 + MIR SINE MIR 132 218 -44 22 0 0 0 chr1 214912092 214912114 -27752239 + AT_rich Low_complexity Low_complexity 1 22 0 2994 181 63 39 chr1 214912229 214912691 -27751662 - L1MA9 LINE L1 -38 6274 5825 315 0 0 0 chr1 214912691 214912726 -27751627 + (TG)n Simple_repeat Simple_repeat 2 36 0 2994 181 63 39 chr1 214912726 214912825 -27751528 - L1MA9 LINE L1 -487 5825 5730 2207 99 10 0 chr1 214912825 214913127 -27751226 - AluSc SINE Alu -4 305 1 2994 181 63 39 chr1 214913127 214913266 -27751087 - L1MA9 LINE L1 -582 5730 5556 332 302 0 0 chr1 214913535 214913621 -27750732 + GA-rich Low_complexity Low_complexity 3 88 0 520 205 76 5 chr1 214913774 214913911 -27750442 + L1MA9 LINE L1 6138 6277 -26 288 211 14 14 chr1 214914444 214914515 -27749838 + L1ME LINE L1 5629 5699 -422 251 226 75 0 chr1 214914571 214914664 -27749689 + L1ME LINE L1 5798 5897 -224 184 298 144 10 chr1 214915642 214915746 -27748607 + L2 LINE L2 2951 3068 -204 202 312 0 52 chr1 214915862 214915939 -27748414 + L2 LINE L2 3239 3311 -2 218 236 0 14 chr1 214916992 214917064 -27747289 + GA-rich Low_complexity Low_complexity 2 72 0 204 135 0 0 chr1 214917130 214917167 -27747186 + (ATG)n Simple_repeat Simple_repeat 3 39 0 1925 117 3 71 chr1 214917440 214917764 -27746589 - AluSg SINE Alu -8 302 1 273 119 0 0 chr1 214919439 214919481 -27744872 + (TG)n Simple_repeat Simple_repeat 2 43 0 2702 131 14 2 chr1 214921468 214921895 -27742458 + MER57B LTR ERV1 1 432 -2 225 367 124 0 chr1 214921996 214922165 -27742188 + L2 LINE L2 3072 3261 -11 215 400 136 19 chr1 214923459 214923614 -27740739 - L2 LINE L2 -9 3263 3091 2198 114 0 10 chr1 214924199 214924507 -27739846 + AluY SINE Alu 1 305 -6 2211 115 0 7 chr1 214924638 214924934 -27739419 + AluSc SINE Alu 1 294 -15 7012 52 0 1 chr1 214924936 214925820 -27738533 - L1P LINE L1 -863 5283 4401 379 313 78 11 chr1 214926341 214926520 -27737833 + MIR3 SINE MIR 8 198 -10 341 280 34 42 chr1 214927268 214927386 -27736967 - MIR SINE MIR -74 188 72 21 0 0 0 chr1 214927819 214927840 -27736513 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 214927894 214927929 -27736424 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 214927975 214927998 -27736355 + AT_rich Low_complexity Low_complexity 1 23 0 2513 74 0 0 chr1 214928121 214928432 -27735921 - AluY SINE Alu 0 311 1 709 291 124 32 chr1 214928578 214929212 -27735141 + L1ME4a LINE L1 5295 6010 -111 2342 65 0 0 chr1 214929212 214929506 -27734847 + AluY SINE Alu 1 294 -17 709 291 124 32 chr1 214929506 214929599 -27734754 + L1ME4a LINE L1 6010 6093 -28 263 344 75 38 chr1 214929757 214929969 -27734384 - L2 LINE L2 -1345 1969 1750 182 62 31 0 chr1 214929982 214930014 -27734339 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 250 369 66 37 chr1 214930023 214930264 -27734089 + L2 LINE L2 2409 2656 -658 222 300 88 12 chr1 214930454 214930534 -27733819 - MIR SINE MIR -81 127 42 632 263 12 0 chr1 214931500 214931660 -27732693 + MER63A DNA MER1_type 49 210 0 288 181 29 36 chr1 214931675 214931813 -27732540 + (TATATG)n Simple_repeat Simple_repeat 2 138 0 325 399 74 10 chr1 214932410 214932613 -27731740 - MIR SINE MIR -18 244 29 1620 143 71 29 chr1 214933339 214933619 -27730734 - AluSx SINE Alu -18 294 3 1745 164 20 0 chr1 214934259 214934564 -27729789 - L1PB4 LINE L1 -8 6148 5838 265 349 92 20 chr1 214935413 214935654 -27728699 - L2 LINE L2 -1287 2027 1766 257 100 20 0 chr1 214935654 214935704 -27728649 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1056 234 34 77 chr1 214986174 214986524 -27677829 - MER102b DNA MER1_type -6 335 1 2234 122 3 0 chr1 214986762 214987057 -27677296 + AluSx SINE Alu 1 296 -16 200 208 0 21 chr1 214989142 214989190 -27675163 + MIR3 SINE MIR 162 208 0 202 188 217 0 chr1 214989615 214989684 -27674669 - MIR SINE MIR -71 191 108 1497 214 19 44 chr1 214990041 214990151 -27674202 + L1MC/D LINE L1 5094 5205 -980 694 218 0 0 chr1 214990151 214990284 -27674069 + FLAM_A SINE Alu 1 133 0 1497 214 19 44 chr1 214990284 214990758 -27673595 + L1MC/D LINE L1 5205 5744 -441 238 145 14 29 chr1 214992860 214992929 -27671424 + GA-rich Low_complexity Low_complexity 6 73 0 231 146 0 0 chr1 214995208 214995249 -27669104 + (CAG)n Simple_repeat Simple_repeat 3 43 0 324 0 0 0 chr1 214996743 214996779 -27667574 + (CA)n Simple_repeat Simple_repeat 2 37 0 387 0 0 0 chr1 214998249 214998292 -27666061 + (CA)n Simple_repeat Simple_repeat 2 44 0 265 341 11 0 chr1 214998840 214998931 -27665422 - MER5A DNA MER1_type -92 97 6 253 371 0 0 chr1 214999451 214999575 -27664778 + (CAG)n Simple_repeat Simple_repeat 1 124 0 240 35 0 0 chr1 215002553 215002582 -27661771 + (CAGAG)n Simple_repeat Simple_repeat 3 31 0 280 370 7 0 chr1 215004382 215004520 -27659833 - MIR3 SINE MIR -10 198 60 323 291 58 41 chr1 215005260 215005432 -27658921 + MIR SINE MIR 67 241 -21 260 264 55 55 chr1 215006007 215006117 -27658236 + L2 LINE L2 3202 3311 -2 184 277 161 62 chr1 215006388 215006500 -27657853 - MIR3 SINE MIR -79 129 7 320 329 67 0 chr1 215008429 215008578 -27655775 - MIR SINE MIR -67 195 37 342 195 38 0 chr1 215010025 215010122 -27654231 + L1MD3 LINE L1 7129 7280 -580 566 164 48 0 chr1 215010125 215010229 -27654124 + MLT1F1 LTR MaLR 6 114 -453 2329 218 97 9 chr1 215010246 215010336 -27654017 + L1MD3 LINE L1 7377 7458 -537 261 57 0 0 chr1 215010336 215010371 -27653982 + (CA)n Simple_repeat Simple_repeat 2 36 0 222 37 0 0 chr1 215010373 215010400 -27653953 + (TATATG)n Simple_repeat Simple_repeat 6 32 0 2329 218 97 9 chr1 215010400 215010862 -27653491 + L1MD3 LINE L1 7458 7981 -14 9085 109 19 12 chr1 215011229 215011377 -27652976 - HSMAR2 DNA Mariner -2 1300 1155 1480 158 96 11 chr1 215011377 215011649 -27652704 + AluJo SINE Alu 4 298 -14 9085 109 19 12 chr1 215011649 215012790 -27651563 - HSMAR2 DNA Mariner -147 1155 2 418 169 11 34 chr1 215012969 215013058 -27651295 - MLT1J LTR MaLR -333 178 92 830 233 35 10 chr1 215013405 215013607 -27650746 + MLT1H LTR MaLR 1 207 -342 859 251 216 3 chr1 215013923 215014214 -27650139 + MLT1H LTR MaLR 195 547 -2 1793 169 0 3 chr1 215014237 215014549 -27649804 - AluJb SINE Alu 0 311 1 341 270 70 0 chr1 215014902 215015017 -27649336 - MLT1J LTR MaLR -264 126 4 183 42 0 0 chr1 215015019 215015043 -27649310 + (ATG)n Simple_repeat Simple_repeat 2 25 0 * 1089 129 19 20 chr1 215015039 215015686 -27648667 + (TAGA)n Simple_repeat Simple_repeat 1 646 0 516 160 0 0 chr1 215016053 215016153 -27648200 + (TG)n Simple_repeat Simple_repeat 1 100 0 529 216 50 148 chr1 215016157 215016435 -27647918 + MIR SINE MIR 12 262 0 1051 204 61 125 chr1 215017774 215018167 -27646186 - MLT1A2 LTR MaLR 0 374 7 550 37 12 12 chr1 215018167 215018249 -27646104 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 2462 83 0 0 chr1 215018297 215018597 -27645756 + AluSc SINE Alu 1 300 -9 186 43 0 0 chr1 215019826 215019849 -27644504 + (CCA)n Simple_repeat Simple_repeat 1 23 0 372 288 43 54 chr1 215019997 215020181 -27644172 - MIR SINE MIR -34 228 47 180 0 0 0 chr1 215020256 215020276 -27644077 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 611 286 41 9 chr1 215020295 215020515 -27643838 + L1ME1 LINE L1 5884 6110 -56 * 6607 15 0 0 chr1 215020513 215021769 -27642584 - L1HS LINE L1 -263 5892 4637 2450 18 0 0 chr1 215021780 215022059 -27642294 + L1HS LINE L1 5875 6153 -2 292 175 16 0 chr1 215022124 215022187 -27642166 + L1ME1 LINE L1 6096 6159 -7 * 1388 139 214 1 chr1 215022185 215022475 -27641878 + L1MC1 LINE L1 5639 5992 -341 1753 154 0 0 chr1 215023315 215023568 -27640785 + AluSx SINE Alu 1 253 -59 262 135 0 53 chr1 215023580 215023683 -27640670 + AluSp SINE Alu 132 280 -22 507 138 37 9 chr1 215023683 215023792 -27640561 + GA-rich Low_complexity Low_complexity 4 115 0 355 261 92 23 chr1 215023901 215024031 -27640322 + MIR SINE MIR 116 254 -8 253 234 0 78 chr1 215024055 215024132 -27640221 - MIR SINE MIR -89 173 103 560 291 46 6 chr1 215026755 215026930 -27637423 + MIR SINE MIR 15 196 -66 1091 181 2 2 chr1 215027088 215027326 -27637027 + L1MA5 LINE L1 2701 2939 -3909 6768 180 67 19 chr1 215027360 215030287 -27634066 + L1MA5 LINE L1 3722 7000 -2 231 283 182 0 chr1 215030962 215031061 -27633292 + MIR SINE MIR 97 213 -49 2161 137 12 3 chr1 215031675 215032003 -27632350 + L1MB2 LINE L1 5838 6168 -3 413 200 193 22 chr1 215032092 215032227 -27632126 - L1ME4a LINE L1 -254 5867 5710 3872 138 26 60 chr1 215032615 215033421 -27630932 - LTR1 LTR ERV1 0 785 7 501 261 35 14 chr1 215033560 215033702 -27630651 - MIR SINE MIR -108 154 10 25 0 0 0 chr1 215034682 215034707 -27629646 + AT_rich Low_complexity Low_complexity 1 25 0 2234 91 20 3 chr1 215035424 215035722 -27628631 + AluSq SINE Alu 3 305 -8 1124 111 19 0 chr1 215035723 215035885 -27628468 + AluSq SINE Alu 135 299 -14 761 228 7 0 chr1 215036163 215036312 -27628041 + MER45A DNA AcHobo 28 177 -1 374 325 127 30 chr1 215036764 215037096 -27627257 - L2 LINE L2 -6 3266 2903 489 353 145 31 chr1 215037172 215038074 -27626279 - L2 LINE L2 -451 2863 1859 22 0 0 0 chr1 215039208 215039230 -27625123 + AT_rich Low_complexity Low_complexity 1 22 0 2251 82 0 0 chr1 215039388 215039720 -27624633 - AluY SINE Alu 0 332 1 917 244 21 13 chr1 215039867 215040101 -27624252 + L1MEc LINE L1 23 258 -6138 3796 156 28 6 chr1 215040103 215040758 -27623595 + Tigger3(Golem) DNA MER2_type 2359 3027 -2 778 258 82 19 chr1 215040762 215041030 -27623323 + L1MEc LINE L1 1564 1848 -4548 24 53 0 0 chr1 215041609 215041647 -27622706 + AT_rich Low_complexity Low_complexity 1 38 0 219 36 0 0 chr1 215041924 215041952 -27622401 + (TG)n Simple_repeat Simple_repeat 2 29 0 1574 259 84 22 chr1 215042260 215042711 -27621642 + MLT1E2 LTR MaLR 148 626 0 708 259 118 62 chr1 215042712 215043214 -27621139 - HAL1 LINE L1 -321 2186 1657 328 132 0 0 chr1 215043228 215043281 -27621072 - L1MB1 LINE L1 -1 6167 6115 1770 88 0 0 chr1 215043281 215043501 -27620852 - L1PA8 LINE L1 -8 6164 5939 2146 126 17 25 chr1 215043501 215043859 -27620494 - L1MB1 LINE L1 -37 6131 5777 1042 145 91 46 chr1 215043857 215043910 -27620443 + L1M3 LINE L1 5412 5461 -707 * 1958 173 24 56 chr1 215043910 215044285 -27620068 - MLT1A1 LTR MaLR 0 365 3 1042 145 91 46 chr1 215044285 215044472 -27619881 + L1M3 LINE L1 5461 5663 -505 2875 93 5 0 chr1 215044707 215045083 -27619270 + MLT2A1 LTR ERVL 1 378 -66 310 91 0 36 chr1 215045092 215045147 -27619206 + MLT2A1 LTR ERVL 355 407 -37 287 155 39 0 chr1 215045154 215045257 -27619096 + (TA)n Simple_repeat Simple_repeat 2 108 0 433 56 0 0 chr1 215045272 215045326 -27619027 + MLT2A1 LTR ERVL 391 444 0 1900 247 126 67 chr1 215045359 215045789 -27618564 - HAL1 LINE L1 -1043 1464 1061 180 0 0 0 chr1 215045789 215045809 -27618544 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1900 247 126 67 chr1 215045809 215046010 -27618343 - HAL1 LINE L1 -1446 1061 873 2400 84 3 0 chr1 215046010 215046321 -27618032 + AluSq SINE Alu 1 312 -1 1900 247 126 67 chr1 215046321 215046725 -27617628 - HAL1 LINE L1 -1634 873 366 314 206 159 16 chr1 215046814 215046940 -27617413 - HAL1 LINE L1 -2312 195 52 3413 32 18 0 chr1 215047314 215047715 -27616638 - L1PA7 LINE L1 -179 5975 5568 2862 70 23 0 chr1 215047708 215048292 -27616061 + L1PA7 LINE L1 4966 5563 -591 * 1984 140 7 10 chr1 215048891 215049199 -27615154 - AluSx SINE Alu -1 311 5 288 282 76 15 chr1 215049201 215049332 -27615021 + MIR SINE MIR 118 256 -6 278 280 27 13 chr1 215050385 215050460 -27613893 - MER5A DNA MER1_type -77 112 37 21 0 0 0 chr1 215050872 215050893 -27613460 + AT_rich Low_complexity Low_complexity 1 21 0 240 253 33 55 chr1 215051021 215051112 -27613241 + MLT1K LTR MaLR 3 91 -497 2181 109 0 3 chr1 215051217 215051549 -27612804 - AluSg SINE Alu 0 331 1 1317 192 67 118 chr1 215052279 215052669 -27611684 + MLT1A2 LTR MaLR 1 370 -4 461 194 21 32 chr1 215052798 215052891 -27611462 + L2 LINE L2 3222 3313 0 446 274 57 46 chr1 215055379 215055438 -27608915 + MIR SINE MIR 20 77 -185 372 43 0 0 chr1 215055438 215055484 -27608869 + (TG)n Simple_repeat Simple_repeat 1 46 0 446 274 57 46 chr1 215055484 215055599 -27608754 + MIR SINE MIR 77 196 -66 234 301 48 0 chr1 215057127 215057210 -27607143 - MIR SINE MIR 0 262 176 229 375 101 30 chr1 215057271 215057661 -27606692 - L2 LINE L2 -265 3048 2621 1628 184 29 70 chr1 215057661 215058074 -27606279 - MSTD LTR MaLR 0 396 1 229 375 101 30 chr1 215058074 215058124 -27606229 - L2 LINE L2 -692 2621 2576 198 345 49 74 chr1 215058294 215058371 -27605982 - L2 LINE L2 -171 3101 3024 1575 207 20 14 chr1 215058371 215058728 -27605625 + MLT1A1 LTR MaLR 5 363 -2 198 345 49 74 chr1 215058728 215058853 -27605500 - L2 LINE L2 -248 3024 2904 198 0 0 0 chr1 215059016 215059038 -27605315 + (A)n Simple_repeat Simple_repeat 1 22 0 183 129 0 0 chr1 215059556 215059587 -27604766 + (A)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr1 215059881 215059907 -27604446 + (A)n Simple_repeat Simple_repeat 1 26 0 334 318 162 0 chr1 215060284 215060432 -27603921 - MIR SINE MIR -70 192 21 225 269 0 118 chr1 215060687 215060806 -27603547 + MIR SINE MIR 5 109 -153 1181 310 29 45 chr1 215061930 215062491 -27601862 - ERVL LTR ERVL -955 4809 4258 270 244 12 12 chr1 215063369 215063451 -27600902 - LTR33A LTR ERVL -2 521 440 379 178 47 0 chr1 215063962 215064131 -27600222 + (TA)n Simple_repeat Simple_repeat 2 178 0 296 200 41 0 chr1 215064145 215064315 -27600038 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 369 211 29 6 chr1 215064317 215064492 -27599861 + (TA)n Simple_repeat Simple_repeat 2 180 0 321 250 10 48 chr1 215064505 215064609 -27599744 + L1MC4 LINE L1 6615 6714 -1328 231 200 22 0 chr1 215064634 215064679 -27599674 + (CA)n Simple_repeat Simple_repeat 2 47 0 882 270 96 48 chr1 215064834 215065994 -27598359 - L1MEc LINE L1 -3616 2810 1586 2110 117 3 35 chr1 215065994 215066310 -27598043 - AluSx SINE Alu -6 306 1 882 270 96 48 chr1 215066310 215066431 -27597922 - L1MEc LINE L1 -4840 1586 1472 326 221 47 0 chr1 215066467 215066553 -27597800 - L1MB4 LINE L1 -40 6140 6051 361 290 108 58 chr1 215066555 215066933 -27597420 - L1MEc LINE L1 -5098 1509 898 592 231 39 35 chr1 215067106 215067309 -27597044 - L1MC5 LINE L1 -48 7913 7710 1268 280 95 21 chr1 215067362 215068630 -27595723 + L1ME3A LINE L1 3813 5185 -961 * 2130 236 57 34 chr1 215068622 215069356 -27594997 + L1ME3A LINE L1 5406 6156 -14 363 286 19 0 chr1 215070479 215070584 -27593769 + MER94 DNA DNA 1 107 -27 374 308 14 21 chr1 215071540 215071683 -27592670 - MIR3 SINE MIR -48 160 19 511 252 0 0 chr1 215072086 215072189 -27592164 + MIR SINE MIR 74 176 -86 5027 116 25 38 chr1 215073397 215073611 -27590742 + L1PA16 LINE L1 5275 5490 -676 2135 120 7 10 chr1 215073611 215073911 -27590442 + AluSg SINE Alu 1 299 -11 5027 116 25 38 chr1 215073911 215074599 -27589754 + L1PA16 LINE L1 5490 6166 0 437 275 41 35 chr1 215074892 215075063 -27589290 - MIR3 SINE MIR -8 200 29 260 259 35 56 chr1 215075307 215075504 -27588849 + L1ME2 LINE L1 5720 5912 -209 27 49 0 0 chr1 215076709 215076750 -27587603 + AT_rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr1 215077105 215077144 -27587209 + AT_rich Low_complexity Low_complexity 1 39 0 279 305 40 63 chr1 215077832 215078006 -27586347 + MLT1I LTR MaLR 103 272 -137 415 250 78 8 chr1 215078196 215078324 -27586029 - MLT1L LTR MaLR -164 451 315 239 333 83 14 chr1 215078494 215078638 -27585715 - L2 LINE L2 -309 2963 2810 475 277 48 50 chr1 215078771 215079085 -27585268 - MLT1I LTR MaLR -2 448 93 754 249 104 81 chr1 215079227 215079386 -27584967 - MLT1L LTR MaLR -94 521 367 2182 117 3 0 chr1 215079386 215079685 -27584668 + AluSg SINE Alu 1 300 -10 754 249 104 81 chr1 215079685 215080032 -27584321 - MLT1L LTR MaLR -248 367 3 295 371 8 8 chr1 215080034 215080158 -27584195 - L2 LINE L2 -570 2744 2621 1793 151 17 23 chr1 215080739 215081038 -27583315 - AluSx SINE Alu -12 300 4 331 220 40 30 chr1 215081423 215081523 -27582830 + MIR SINE MIR 102 202 -60 189 231 82 97 chr1 215081574 215081708 -27582645 - MIR SINE MIR -111 151 20 299 155 0 0 chr1 215082121 215082179 -27582174 + L1MA7 LINE L1 6215 6272 -19 719 214 50 10 chr1 215082418 215082619 -27581734 + L1ME2 LINE L1 5935 6143 -21 925 214 8 21 chr1 215083240 215083478 -27580875 + L1ME1 LINE L1 5671 5905 -261 1326 186 14 93 chr1 215083486 215083840 -27580513 + MLT1A2 LTR MaLR 1 326 -48 956 207 39 5 chr1 215084053 215084261 -27580092 - MER20 DNA MER1_type -4 215 1 328 260 57 32 chr1 215085090 215085213 -27579140 + L2 LINE L2 3145 3270 -2 448 285 78 67 chr1 215085879 215086223 -27578130 + L1MC4a LINE L1 5521 5868 -1940 21 36 0 0 chr1 215086527 215086555 -27577798 + AT_rich Low_complexity Low_complexity 1 28 0 396 310 208 9 chr1 215086855 215087071 -27577282 - MIR SINE MIR -3 259 1 700 181 19 111 chr1 215088010 215088226 -27576127 - MER105 DNA DNA -7 197 2 189 320 152 28 chr1 215088264 215088442 -27575911 - L3 LINE CR1 -7 1570 1371 351 258 11 11 chr1 215090496 215090589 -27573764 + MIR SINE MIR 170 262 0 220 310 90 0 chr1 215090611 215090711 -27573642 - L2 LINE L2 -53 3219 3111 572 298 45 8 chr1 215091002 215091244 -27573109 - MLT1L LTR MaLR -10 605 355 289 322 157 0 chr1 215091727 215091842 -27572511 - L2 LINE L2 0 3313 3181 412 267 200 0 chr1 215092105 215092225 -27572128 + MIR3 SINE MIR 2 145 -63 4418 113 10 9 chr1 215092229 215093056 -27571297 + L1PB2 LINE L1 5170 5997 -154 731 198 47 5 chr1 215093165 215093357 -27570996 + L1PB3 LINE L1 5951 6150 -4 30 0 0 0 chr1 215093882 215093912 -27570441 + AT_rich Low_complexity Low_complexity 1 30 0 1180 211 76 62 chr1 215094693 215095062 -27569291 - MLT1A2 LTR MaLR 0 374 1 312 237 170 15 chr1 215096619 215096754 -27567599 - MER103 DNA DNA -3 163 8 336 287 88 15 chr1 215097022 215097158 -27567195 - MIR SINE MIR -116 146 1 956 262 48 8 chr1 215099848 215100100 -27564253 + MIR SINE MIR 1 262 0 210 304 0 43 chr1 215100338 215100407 -27563946 - MIR SINE MIR -62 146 81 231 211 179 11 chr1 215102546 215102641 -27561712 - MIR SINE MIR -102 160 50 252 260 68 0 chr1 215102707 215102780 -27561573 + MLT1L LTR MaLR 1 78 -537 423 252 15 78 chr1 215102823 215103029 -27561324 + MLT1L LTR MaLR 190 382 -233 318 329 111 35 chr1 215103587 215104009 -27560344 + L1MB2 LINE L1 4864 5317 -829 243 208 57 88 chr1 215104010 215104169 -27560184 + L1MB2 LINE L1 5319 5472 -2336 1784 145 35 3 chr1 215104689 215105007 -27559346 + L1MA4A LINE L1 5970 6297 -6 189 114 68 68 chr1 215105303 215105347 -27559006 - MIR SINE MIR -75 133 90 616 98 54 0 chr1 215106109 215106221 -27558132 - L1MA4A LINE L1 -5 6298 6181 192 77 0 0 chr1 215106807 215106833 -27557520 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 349 304 87 9 chr1 215107166 215107281 -27557072 - MIR SINE MIR -57 151 28 346 272 148 46 chr1 215107592 215107809 -27556544 + MIR SINE MIR 18 256 -6 484 356 153 24 chr1 215108648 215108982 -27555371 + L2 LINE L2 2859 3235 -37 404 239 168 61 chr1 215112418 215112698 -27551655 + LTR33 LTR ERVL 25 334 -187 1656 217 85 15 chr1 215112698 215113168 -27551185 + MLT1D LTR MaLR 1 503 -2 339 209 133 19 chr1 215113196 215113301 -27551052 + LTR33 LTR ERVL 397 513 -8 220 276 9 76 chr1 215113550 215113655 -27550698 + MER5B DNA MER1_type 7 104 -74 296 257 83 40 chr1 215114217 215114434 -27549919 + MLT1L LTR MaLR 350 606 -9 680 187 19 13 chr1 215115108 215115263 -27549090 + L1MB2 LINE L1 6005 6160 -11 501 266 68 89 chr1 215115364 215115612 -27548741 - MIR SINE MIR 0 262 20 294 302 35 9 chr1 215115656 215115772 -27548581 - MIR SINE MIR -112 150 32 19113 85 14 5 chr1 215115870 215119316 -27545037 + L1PA7 LINE L1 2698 6147 -7 824 220 0 6 chr1 215119378 215119555 -27544798 + MER3 DNA MER1_type 2 130 -79 1615 136 77 26 chr1 215119585 215119858 -27544495 - AluSq SINE Alu -20 293 7 585 198 172 5 chr1 215119918 215120110 -27544243 - Charlie1 DNA MER1_type -2529 232 9 261 0 0 0 chr1 215120887 215120916 -27543437 + (CA)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr1 215120915 215120937 -27543416 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 387 299 46 46 chr1 215121980 215122182 -27542171 - MIR SINE MIR -56 206 6 447 208 68 136 chr1 215123187 215123242 -27541111 - MIR SINE MIR -35 227 170 892 150 0 0 chr1 215123242 215123375 -27540978 - FLAM_C SINE Alu 0 133 1 447 208 68 136 chr1 215123375 215123540 -27540813 - MIR SINE MIR -92 170 22 1678 184 114 25 chr1 215123545 215123947 -27540406 + MLT2B2 LTR ERVL 3 440 -75 1678 170 10 43 chr1 215124245 215124545 -27539808 - AluJb SINE Alu -22 290 1 2260 108 0 0 chr1 215124723 215125019 -27539334 - AluSx SINE Alu -16 296 1 21 0 0 0 chr1 215125573 215125594 -27538759 + AT_rich Low_complexity Low_complexity 1 21 0 335 329 125 33 chr1 215125726 215126030 -27538323 + L3 LINE CR1 64 395 -1182 322 259 184 27 chr1 215126041 215126117 -27538236 - L2 LINE L2 0 3313 3250 180 0 0 0 chr1 215126117 215126137 -27538216 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 322 259 184 27 chr1 215126137 215126245 -27538108 - L2 LINE L2 -63 3250 3100 * 360 333 105 49 chr1 215126236 215126560 -27537793 + L3 LINE CR1 381 722 -855 5341 224 72 37 chr1 215126585 215127645 -27536708 + L1M4 LINE L1 39 1060 -5584 252 0 0 0 chr1 215127645 215127673 -27536680 + (CA)n Simple_repeat Simple_repeat 2 29 0 715 172 0 31 chr1 215127673 215127801 -27536552 + FLAM_A SINE Alu 5 128 -5 5341 224 72 37 chr1 215127801 215127821 -27536532 + L1M4 LINE L1 1060 1078 -5566 2369 82 0 28 chr1 215127821 215128139 -27536214 + AluY SINE Alu 1 309 -2 5341 224 72 37 chr1 215128139 215131223 -27533130 + L1M4 LINE L1 1078 4405 -2239 1840 225 53 4 chr1 215131218 215131725 -27532628 + L1M4 LINE L1 5172 5703 -941 * 22035 124 12 47 chr1 215131737 215135804 -27528549 + L1PA7 LINE L1 10 3934 -2212 760 85 0 0 chr1 215135800 215135918 -27528435 + L1PA7 LINE L1 4591 4708 -1438 * 6647 71 11 2 chr1 215136019 215137065 -27527288 + L1PA7 LINE L1 5096 6150 -4 345 225 28 0 chr1 215137067 215137138 -27527215 + L1M4 LINE L1 5686 5758 -886 9428 173 52 6 chr1 215137149 215139307 -27525046 + L1MA2 LINE L1 3244 5493 -743 5205 100 36 5 chr1 215139683 215140250 -27524103 + L1MA2 LINE L1 5477 6078 -226 2429 74 3 16 chr1 215140250 215140560 -27523793 + AluSp SINE Alu 1 306 -7 5205 100 36 5 chr1 215140560 215140795 -27523558 + L1MA2 LINE L1 6078 6304 0 680 156 39 39 chr1 215140804 215140983 -27523370 + L1M4 LINE L1 5761 5939 -737 338 310 62 113 chr1 215140997 215141387 -27522966 + L2 LINE L2 2897 3266 -6 3929 173 8 14 chr1 215141601 215142313 -27522040 + L1MA4 LINE L1 4 711 -4617 360 111 0 0 chr1 215142325 215142379 -27521974 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 262 178 44 52 chr1 215142491 215142626 -27521727 + (CCGCG)n Simple_repeat Simple_repeat 2 135 0 246 245 36 36 chr1 215142558 215142697 -27521656 + (CGCGG)n Simple_repeat Simple_repeat 3 141 0 * 235 127 0 51 chr1 215142698 215142777 -27521576 + (CGGGGG)n Simple_repeat Simple_repeat 1 75 0 43 78 0 0 chr1 215142777 215142828 -27521525 + GC_rich Low_complexity Low_complexity 1 51 0 200 217 98 21 chr1 215142828 215142971 -27521382 + (CCGGG)n Simple_repeat Simple_repeat 1 154 0 85 62 0 0 chr1 215142971 215143068 -27521285 + GC_rich Low_complexity Low_complexity 1 97 0 222 238 0 0 chr1 215143068 215143131 -27521222 + G-rich Low_complexity Low_complexity 1 63 0 399 325 0 0 chr1 215143142 215143225 -27521128 + polypurine Low_complexity Low_complexity 1 83 0 13811 179 28 28 chr1 215143225 215144236 -27520117 + L1MA4 LINE L1 715 1725 -4757 2243 100 0 7 chr1 215144236 215144535 -27519818 + AluSc SINE Alu 1 297 -12 13811 179 28 28 chr1 215144535 215146512 -27517841 + L1MA4 LINE L1 1725 3702 -2780 1689 168 0 46 chr1 215146512 215146816 -27517537 + AluJo SINE Alu 1 290 -22 13811 179 28 28 chr1 215146816 215149609 -27514744 + L1MA4 LINE L1 3702 6482 0 24 0 0 0 chr1 215149880 215149904 -27514449 + AT_rich Low_complexity Low_complexity 1 24 0 2105 142 0 0 chr1 215150084 215150380 -27513973 - AluSg SINE Alu -14 296 1 703 288 107 49 chr1 215150495 215151027 -27513326 - L1M4 LINE L1 -3014 3132 2570 2118 113 17 0 chr1 215151126 215151419 -27512934 - AluSq SINE Alu -15 298 1 328 273 30 10 chr1 215152244 215152379 -27511974 + L1MC4 LINE L1 6508 6708 -1133 180 111 0 0 chr1 215153176 215153203 -27511150 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 2390 224 68 5 chr1 215154525 215154813 -27509540 + MLT1E1 LTR MaLR 3 271 -383 1808 187 34 14 chr1 215154813 215155171 -27509182 - MLT1A1 LTR MaLR 0 365 1 2390 224 68 5 chr1 215155171 215155495 -27508858 + MLT1E1 LTR MaLR 271 654 0 241 311 33 33 chr1 215155754 215155844 -27508509 + MIR SINE MIR 34 123 -139 25 75 0 0 chr1 215155859 215155912 -27508441 + AT_rich Low_complexity Low_complexity 1 53 0 515 284 114 0 chr1 215155983 215156184 -27508169 + MIR SINE MIR 38 261 -1 205 354 41 48 chr1 215156302 215156449 -27507904 + L2 LINE L2 3127 3272 0 201 307 0 40 chr1 215156920 215156995 -27507358 + MIR SINE MIR 116 187 -75 319 225 88 0 chr1 215158109 215158189 -27506164 + L2 LINE L2 3185 3271 -1 2013 209 40 44 chr1 215158795 215159341 -27505012 - L1MC4 LINE L1 -5 8037 7494 * 2419 242 124 16 chr1 215159334 215160091 -27504262 - L1MC4a LINE L1 -522 7286 6448 338 200 38 0 chr1 215160158 215160238 -27504115 - L1ME2 LINE L1 -16 6217 6135 251 128 0 0 chr1 215160248 215160287 -27504066 - MER3 DNA MER1_type -160 49 11 1343 173 50 35 chr1 215160287 215160629 -27503724 - L1ME2 LINE L1 -162 6071 5725 727 198 6 0 chr1 215160624 215160791 -27503562 - L1ME2 LINE L1 -2919 3296 3129 * 305 123 14 9 chr1 215160802 215160865 -27503488 - Alu SINE Alu -255 48 4 845 221 99 20 chr1 215160868 215161162 -27503191 - L1ME2 LINE L1 -4267 2129 1813 373 196 69 0 chr1 215161709 215161811 -27502542 + L1MEc LINE L1 2029 2137 -4259 1885 208 77 48 chr1 215162020 215162525 -27501828 - MLT2B1 LTR ERVL 0 520 1 391 308 82 6 chr1 215163567 215163726 -27500627 - MIR3 SINE MIR -8 200 30 2226 102 3 10 chr1 215163852 215164146 -27500207 - AluSq SINE Alu -19 294 3 516 213 56 93 chr1 215164936 215165050 -27499303 + MER102a DNA MER1_type 109 213 -1204 2796 167 60 0 chr1 215165050 215165536 -27498817 + MLT2B2 LTR ERVL 1 515 0 516 213 56 93 chr1 215165536 215165637 -27498716 + MER102a DNA MER1_type 213 316 -14 443 207 36 27 chr1 215165989 215166100 -27498253 - MIR3 SINE MIR -45 163 52 2188 160 45 29 chr1 215166673 215167212 -27497141 + MLT2A2 LTR ERVL 1 554 0 280 281 152 23 chr1 215167336 215167507 -27496846 + L2 LINE L2 3106 3298 -15 313 283 114 27 chr1 215168114 215168298 -27496055 - MIR SINE MIR -3 259 60 1672 139 73 21 chr1 215169324 215169612 -27494741 + AluJo SINE Alu 1 303 -9 575 259 57 44 chr1 215169934 215170162 -27494191 - L1ME3A LINE L1 0 6170 5940 655 191 57 21 chr1 215170682 215170835 -27493518 - L1MB5 LINE L1 -2 6169 5998 1290 203 44 10 chr1 215170952 215171248 -27493105 - MER33 DNA MER1_type -31 293 1 32 47 0 16 chr1 215171368 215171387 -27492966 + AT_rich Low_complexity Low_complexity 1 19 -44 1528 174 46 11 chr1 215171387 215171669 -27492684 + AluJb SINE Alu 1 292 -20 32 47 0 16 chr1 215171669 215171713 -27492640 + AT_rich Low_complexity Low_complexity 19 63 0 181 300 0 43 chr1 215172425 215172495 -27491858 + MIR3 SINE MIR 140 206 -2 207 69 0 0 chr1 215172515 215172544 -27491809 + (CA)n Simple_repeat Simple_repeat 2 30 0 547 140 9 9 chr1 215173190 215173297 -27491056 + GA-rich Low_complexity Low_complexity 2 108 0 227 372 0 0 chr1 215173890 215173976 -27490377 + MER5A DNA MER1_type 47 132 -57 194 0 0 37 chr1 215174400 215174427 -27489926 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2805 120 6 70 chr1 215175543 215175596 -27488757 - L1MB2 LINE L1 -1 6170 6115 1562 184 0 0 chr1 215175596 215175852 -27488501 - AluJo SINE Alu -15 297 42 2805 120 6 70 chr1 215175852 215176314 -27488039 - L1MB2 LINE L1 -56 6115 5688 185 0 40 0 chr1 215176598 215176623 -27487730 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 811 145 15 0 chr1 215178822 215178953 -27485400 + AluJo SINE Alu 1 133 -169 244 282 70 0 chr1 215178953 215178989 -27485364 + AluJo SINE Alu 134 174 -128 259 231 0 0 chr1 215178989 215179041 -27485312 + LTR30 LTR ERV1 1 52 -670 2713 98 127 0 chr1 215179041 215179470 -27484883 + LTR12 LTR ERV1 52 480 -234 1073 104 0 0 chr1 215179471 215179615 -27484738 + AluSc SINE Alu 164 307 -2 1654 189 0 40 chr1 215181936 215182259 -27482094 - AluJo SINE Alu -2 310 1 219 244 70 0 chr1 215183501 215183587 -27480766 - MER91C DNA MER1_type -31 109 18 2225 101 7 14 chr1 215183679 215183976 -27480377 + AluY SINE Alu 1 295 -16 205 372 98 20 chr1 215184033 215184439 -27479914 + L2 LINE L2 2384 2821 -493 182 365 33 50 chr1 215184599 215184780 -27479573 + L2 LINE L2 3006 3183 -89 385 252 8 47 chr1 215185228 215185355 -27478998 + L2 LINE L2 3183 3304 -9 207 100 0 0 chr1 215185356 215185386 -27478967 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 327 299 85 23 chr1 215185710 215185887 -27478466 - MIR SINE MIR -55 207 20 1906 139 0 0 chr1 215186920 215187187 -27477166 + AluSx SINE Alu 26 292 -20 264 77 0 0 chr1 215187187 215187226 -27477127 + (TTAAA)n Simple_repeat Simple_repeat 2 40 0 305 287 11 11 chr1 215187491 215187585 -27476768 - MIR SINE MIR -108 154 61 205 248 121 47 chr1 215188695 215188844 -27475509 - MIR3 SINE MIR -45 163 4 246 32 0 0 chr1 215189101 215189132 -27475221 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1966 152 0 0 chr1 215189135 215189418 -27474935 - AluSx SINE Alu -29 283 1 363 264 82 60 chr1 215190883 215191236 -27473117 - L1MC5 LINE L1 -49 7912 7552 21 0 0 0 chr1 215192331 215192352 -27472001 + AT_rich Low_complexity Low_complexity 1 21 0 2777 91 3 3 chr1 215193440 215193804 -27470549 + THE1B LTR MaLR 1 364 0 2276 117 0 0 chr1 215194216 215194515 -27469838 + AluSx SINE Alu 1 299 -13 882 268 190 47 chr1 215195332 215196327 -27468026 - L2 LINE L2 -2 3270 2128 292 340 52 0 chr1 215197149 215197302 -27467051 + MIR SINE MIR 50 210 -52 277 301 154 0 chr1 215199175 215199311 -27465042 + MIR3 SINE MIR 10 166 -42 710 192 20 7 chr1 215199401 215199552 -27464801 - FRAM SINE Alu -2 174 22 200 194 30 15 chr1 215200686 215200753 -27463600 + (TAA)n Simple_repeat Simple_repeat 3 70 0 701 225 114 8 chr1 215200890 215201186 -27463167 - MER113 DNA MER1_type? 0 521 141 557 208 6 44 chr1 215201299 215201458 -27462895 - MER113 DNA MER1_type? -363 158 6 344 266 125 8 chr1 215201478 215201606 -27462747 + MIR SINE MIR 44 186 -76 22 35 0 0 chr1 215201818 215201847 -27462506 + AT_rich Low_complexity Low_complexity 1 29 0 299 242 20 50 chr1 215201932 215202031 -27462322 - L1ME3A LINE L1 0 6170 6075 361 218 90 0 chr1 215202167 215202245 -27462108 - MARNA DNA Mariner -48 538 454 786 281 25 9 chr1 215203741 215204065 -27460288 + L1ME4a LINE L1 5549 5877 -244 355 165 44 22 chr1 215204164 215204255 -27460098 + L1ME4a LINE L1 6025 6117 -4 23 0 0 0 chr1 215206321 215206344 -27458009 + AT_rich Low_complexity Low_complexity 1 23 0 668 189 92 7 chr1 215206361 215206514 -27457839 + L1M3 LINE L1 5601 5766 -414 2717 136 20 5 chr1 215206528 215206968 -27457385 - L1MB4 LINE L1 -40 6140 5694 1461 63 112 0 chr1 215207038 215207244 -27457109 - MER30 DNA MER1_type -1 229 1 230 331 30 30 chr1 215207297 215207430 -27456923 + L2 LINE L2 2932 3064 -208 2328 62 0 33 chr1 215207770 215208075 -27456278 - AluY SINE Alu -16 295 1 204 40 0 0 chr1 215208549 215208574 -27455779 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2176 64 30 0 chr1 215208578 215208725 -27455628 - AluSx SINE Alu -34 278 118 210 37 0 0 chr1 215208725 215208752 -27455601 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2176 64 30 0 chr1 215208752 215208871 -27455482 - AluSx SINE Alu -194 118 4 1691 174 72 57 chr1 215210507 215210966 -27453387 - MER31B LTR ERV1 0 466 1 349 217 114 54 chr1 215213296 215213462 -27450891 - MER104 DNA Tc2 -3 177 2 318 235 160 76 chr1 215213621 215213859 -27450494 - MIR SINE MIR -4 258 1 1839 121 38 3 chr1 215215838 215216128 -27448225 + AluSx SINE Alu 1 300 -12 379 298 111 6 chr1 215217112 215217283 -27447070 - MIR SINE MIR -60 202 14 204 238 38 12 chr1 215217296 215217376 -27446977 + (TA)n Simple_repeat Simple_repeat 2 83 0 189 107 0 0 chr1 215217386 215217414 -27446939 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 2688 134 111 14 chr1 215217437 215217931 -27446422 - MER34 LTR ERV1 0 542 1 2481 132 35 26 chr1 215217954 215218305 -27446048 + MSTA LTR MaLR 1 358 -70 2066 117 3 22 chr1 215218305 215218622 -27445731 - AluSx SINE Alu -1 311 1 2481 132 35 26 chr1 215218622 215218694 -27445659 + MSTA LTR MaLR 358 428 0 360 209 0 0 chr1 215218708 215218775 -27445578 + Tigger5 DNA MER2_type 2257 2323 0 39 22 0 0 chr1 215220282 215220328 -27444025 + AT_rich Low_complexity Low_complexity 1 46 0 5564 122 10 1 chr1 215220404 215221217 -27443136 + L1PA15 LINE L1 5346 6165 0 231 36 0 0 chr1 215221765 215221793 -27442560 + (CA)n Simple_repeat Simple_repeat 2 29 0 1237 161 0 5 chr1 215222455 215222666 -27441687 + AluJb SINE Alu 85 294 -18 356 314 46 67 chr1 215222681 215222748 -27441605 + L1ME4a LINE L1 5835 5902 -219 225 0 0 0 chr1 215222748 215222773 -27441580 + (TG)n Simple_repeat Simple_repeat 2 26 0 356 314 46 67 chr1 215222773 215222944 -27441409 + L1ME4a LINE L1 5902 6068 -53 2735 212 54 33 chr1 215223006 215223695 -27440658 - MER21B LTR ERV1 -63 800 98 506 122 20 82 chr1 215223734 215223832 -27440521 - MER21B LTR ERV1 -767 96 5 291 28 0 0 chr1 215224018 215224054 -27440299 + (CA)n Simple_repeat Simple_repeat 2 37 0 231 336 95 0 chr1 215224142 215224258 -27440095 + L2 LINE L2 3146 3272 0 654 258 179 56 chr1 215224300 215224808 -27439545 + L1ME4a LINE L1 5421 6032 -89 1547 88 0 0 chr1 215224808 215225013 -27439340 - L1PA8 LINE L1 -4 6168 5964 654 258 179 56 chr1 215225013 215225115 -27439238 + L1ME4a LINE L1 6032 6120 -1 2166 106 7 0 chr1 215225418 215225719 -27438634 - AluSx SINE Alu -7 305 3 1839 72 0 61 chr1 215226601 215226879 -27437474 - AluY SINE Alu 0 311 51 186 43 0 0 chr1 215226974 215226997 -27437356 + (GA)n Simple_repeat Simple_repeat 2 24 0 345 221 234 7 chr1 215227200 215227345 -27437008 + MER5B DNA MER1_type 1 178 0 492 286 14 14 chr1 215228196 215228336 -27436017 + MIR SINE MIR 25 164 -98 786 282 28 28 chr1 215228336 215228584 -27435769 + MER112 DNA MER1_type 1 248 -12 290 282 0 12 chr1 215228584 215228669 -27435684 + MIR SINE MIR 179 262 0 183 373 0 0 chr1 215228887 215228946 -27435407 - MIR SINE MIR -175 87 29 680 130 9 9 chr1 215229743 215229851 -27434502 - AluJb SINE Alu -176 136 29 24 77 0 0 chr1 215229862 215229914 -27434439 + AT_rich Low_complexity Low_complexity 1 52 0 695 176 22 110 chr1 215230390 215230572 -27433781 + MER69A DNA AcHobo 3 168 -9 250 258 100 42 chr1 215230720 215230840 -27433513 - MER5A DNA MER1_type 0 189 63 1759 162 0 29 chr1 215230856 215231165 -27433188 + AluJo SINE Alu 1 300 -12 218 224 0 41 chr1 215231256 215231305 -27433048 + L2 LINE L2 3223 3269 -3 1543 159 58 27 chr1 215231940 215232235 -27432118 - AluJo SINE Alu -7 305 2 2031 125 3 0 chr1 215232345 215232641 -27431712 + AluSx SINE Alu 1 297 -15 550 311 86 18 chr1 215232779 215233001 -27431352 + MIR SINE MIR 26 262 0 532 195 97 9 chr1 215234185 215234298 -27430055 - L2 LINE L2 -3 3310 3188 238 395 26 11 chr1 215234642 215234832 -27429521 + L2 LINE L2 2449 2641 -673 417 204 57 0 chr1 215235310 215235398 -27428955 - MER5A DNA MER1_type -77 112 20 420 280 46 29 chr1 215235427 215235590 -27428763 + MIR SINE MIR 6 164 -65 936 226 139 15 chr1 215235626 215235958 -27428395 - Charlie2 DNA MER1_type 0 2862 2490 1516 209 130 8 chr1 215235991 215236498 -27427855 - Charlie2 DNA MER1_type -438 2424 1856 349 236 91 0 chr1 215236489 215236599 -27427754 - Charlie2 DNA MER1_type -2452 330 211 * 464 255 67 27 chr1 215237643 215237792 -27426561 + L1 LINE L1 4399 4553 -1593 207 299 115 11 chr1 215237802 215237867 -27426486 - MIR SINE MIR -2 260 182 285 51 0 0 chr1 215237867 215237906 -27426447 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 299 115 11 chr1 215237906 215237927 -27426426 - MIR SINE MIR -80 182 165 2087 115 3 0 chr1 215238019 215238314 -27426039 + AluSq SINE Alu 1 296 -17 2194 101 0 3 chr1 215238455 215238762 -27425591 + AluSc SINE Alu 1 306 -3 1438 192 96 51 chr1 215238917 215239271 -27425082 + MLT1A2 LTR MaLR 1 370 -4 2130 114 3 0 chr1 215239536 215239842 -27424511 + AluSq SINE Alu 1 307 -6 239 248 291 0 chr1 215240207 215240324 -27424029 + MIR SINE MIR 49 199 -63 2406 231 26 11 chr1 215240890 215241428 -27422925 + MER74A LTR ERVL 1 546 -12 1873 156 7 0 chr1 215242674 215242975 -27421378 - AluSx SINE Alu -9 303 1 2299 74 0 52 chr1 215243488 215243814 -27420539 - AluY SINE Alu -2 309 1 27 49 0 0 chr1 215243846 215243887 -27420466 + AT_rich Low_complexity Low_complexity 1 41 0 1645 145 3 28 chr1 215243898 215244187 -27420166 - AluJo SINE Alu -30 282 1 284 254 42 14 chr1 215245739 215245810 -27418543 - MIR3 SINE MIR -13 195 123 566 330 41 9 chr1 215245886 215246107 -27418246 + MIR SINE MIR 20 247 -15 291 260 49 73 chr1 215246601 215246724 -27417629 - MER5A DNA MER1_type -23 166 47 2237 119 0 0 chr1 215247016 215247326 -27417027 + AluSx SINE Alu 1 310 -2 317 229 67 19 chr1 215247645 215247750 -27416603 - MIR3 SINE MIR -5 203 94 3111 165 43 22 chr1 215248724 215249371 -27414982 + MER67B LTR ERV1 1 661 0 395 333 90 62 chr1 215250121 215250794 -27413559 - L2 LINE L2 -161 3111 2395 2488 62 0 0 chr1 215250794 215251101 -27413252 + AluY SINE Alu 1 307 -4 395 333 90 62 chr1 215251101 215251217 -27413136 - L2 LINE L2 -877 2395 2284 234 301 0 41 chr1 215251197 215251270 -27413083 + MIR3 SINE MIR 86 155 -53 * 2310 155 54 2 chr1 215251477 215251884 -27412469 - MSTA LTR MaLR 0 428 1 335 250 0 0 chr1 215252387 215252459 -27411894 - MLT1J2 LTR MaLR -34 416 345 1088 188 0 73 chr1 215252485 215252719 -27411634 + AluJo SINE Alu 1 217 -95 21644 134 33 66 chr1 215252927 215257495 -27406858 + L1MA2 LINE L1 14 4729 -2836 2347 67 0 0 chr1 215257495 215257795 -27406558 + AluY SINE Alu 1 300 -11 21644 134 33 66 chr1 215257795 215258048 -27406305 + L1MA2 LINE L1 4729 4673 -2892 714 100 0 0 chr1 215258048 215258145 -27406208 + L1MA2 LINE L1 6205 6304 0 21644 134 33 66 chr1 215258145 215258275 -27406078 + L1MA2 LINE L1 4672 4805 -2760 6876 121 21 18 chr1 215258262 215260195 -27404158 + L1MA2 LINE L1 5687 7611 -112 * 21 0 0 0 chr1 215260195 215260216 -27404137 + AT_rich Low_complexity Low_complexity 1 21 0 1884 107 7 0 chr1 215260199 215260546 -27403807 - AluSx SINE Alu 0 349 1 6876 121 21 18 chr1 215260216 215260545 -27403808 + L1MA2 LINE L1 7611 7631 -92 2299 80 3 0 chr1 215260545 215260845 -27403508 - AluSc SINE Alu -8 301 1 6876 121 21 18 chr1 215260845 215260939 -27403414 + L1MA2 LINE L1 7631 7723 0 562 131 24 0 chr1 215260952 215261036 -27403317 + FRAM SINE Alu 71 156 -20 309 294 92 17 chr1 215261199 215261318 -27403035 - L1MC4 LINE L1 -1305 6737 6610 277 153 60 13 chr1 215261369 215261519 -27402834 + (TA)n Simple_repeat Simple_repeat 2 158 0 24 32 0 0 chr1 215262222 215262253 -27402100 + AT_rich Low_complexity Low_complexity 1 31 0 255 356 10 0 chr1 215263255 215263356 -27400997 + Charlie8 DNA MER1_type 140 241 -2176 188 196 0 18 chr1 215264699 215264755 -27399598 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 2242 175 44 19 chr1 215264860 215264911 -27399442 - L1MB7 LINE L1 -19 6165 6117 2260 116 36 30 chr1 215264911 215265273 -27399080 - THE1B LTR MaLR 0 364 1 2242 175 44 19 chr1 215265273 215265695 -27398658 - L1MB7 LINE L1 -67 6117 5680 1126 155 6 0 chr1 215265696 215265877 -27398476 - AluJb SINE Alu -5 307 126 721 197 33 0 chr1 215265882 215266034 -27398319 - L1MB7 LINE L1 -504 5670 5514 210 108 0 54 chr1 215266979 215267016 -27397337 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 2103 122 3 0 chr1 215267099 215267402 -27396951 + AluSx SINE Alu 1 304 -8 202 143 0 24 chr1 215267655 215267697 -27396656 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2446 65 0 3 chr1 215268252 215268561 -27395792 - AluY SINE Alu -3 308 1 254 231 308 0 chr1 215268864 215268955 -27395398 - L2 LINE L2 0 3272 3154 979 224 43 37 chr1 215269131 215269430 -27394923 + L1ME3A LINE L1 5680 5980 -190 1622 199 32 0 chr1 215270174 215270486 -27393867 + MLT1D LTR MaLR 4 325 -180 1792 245 47 12 chr1 215270486 215271082 -27393271 + L1M4 LINE L1 2823 3439 -2707 607 197 189 8 chr1 215271082 215271214 -27393139 + AluJo SINE Alu 89 244 -68 3344 224 39 12 chr1 215271215 215272109 -27392244 + L1M4 LINE L1 3934 4851 -1295 702 153 0 0 chr1 215272118 215272229 -27392124 - FLAM_C SINE Alu -31 112 2 736 171 92 127 chr1 215272231 215272286 -27392067 + L1M4 LINE L1 4848 4903 -1243 2001 140 7 0 chr1 215272286 215272594 -27391759 - AluSx SINE Alu -2 310 1 736 171 92 127 chr1 215272594 215272853 -27391500 + L1M4 LINE L1 4903 5151 -995 528 126 53 21 chr1 215272853 215272948 -27391405 + MER4A LTR ERV1 1 98 -566 1746 126 3 77 chr1 215272948 215273262 -27391091 + MER4A LTR ERV1 261 603 -61 2139 80 20 3 chr1 215273262 215273563 -27390790 - AluY SINE Alu -2 309 4 1746 126 3 77 chr1 215273563 215273621 -27390732 + MER4A LTR ERV1 603 664 0 1751 71 119 0 chr1 215273624 215273876 -27390477 + MER4A-int LTR ERV1 1 282 -6316 * 15214 76 5 2 chr1 215273869 215275784 -27388569 - Harlequin LTR ERV1 -1623 5273 3352 5813 47 71 72 chr1 215275783 215276786 -27387567 - Harlequin LTR ERV1 -4322 2574 1573 * 8336 54 18 22 chr1 215276779 215277856 -27386497 - Harlequin LTR ERV1 -5562 1334 263 2898 98 5 2 chr1 215277836 215278234 -27386119 - Harlequin LTR ERV1 -6497 399 1 * 2389 177 20 34 chr1 215278234 215278731 -27385622 - LTR2B LTR ERV1 0 490 1 2282 113 23 3 chr1 215278732 215279078 -27385275 + PABL_A-int LTR ERV1 3332 3684 -1331 1020 151 4 33 chr1 215279078 215279310 -27385043 - MER4A LTR ERV1 -120 544 261 569 116 53 21 chr1 215279310 215279405 -27384948 - MER4A LTR ERV1 -566 98 1 7192 85 62 13 chr1 215279416 215280709 -27383644 - MER4A-int LTR ERV1 -5 6593 5182 582 152 8 114 chr1 215280709 215280841 -27383512 + MER4A LTR ERV1 547 664 0 1799 186 33 7 chr1 215280842 215281327 -27383026 + L1MB8 LINE L1 5149 5640 -544 4192 185 46 63 chr1 215281330 215282263 -27382090 + MER21A LTR ERV1 1 917 -14 2760 175 21 4 chr1 215282274 215282799 -27381554 + L1MB8 LINE L1 5639 6172 -6 2088 107 0 7 chr1 215283159 215283459 -27380894 + AluSx SINE Alu 1 298 -14 226 312 0 32 chr1 215283727 215283820 -27380533 - L1 LINE L1 -1169 4977 4888 2243 64 0 24 chr1 215284493 215284791 -27379562 + AluSq SINE Alu 1 291 -22 390 259 107 0 chr1 215285109 215285240 -27379113 + MIR SINE MIR 81 225 -37 247 290 60 20 chr1 215285641 215285741 -27378612 + L2 LINE L2 2426 2529 -785 1628 163 7 14 chr1 215285779 215286062 -27378291 - AluJo SINE Alu -27 285 5 205 255 156 50 chr1 215286552 215286693 -27377660 + L2 LINE L2 3158 3313 0 1017 137 31 0 chr1 215286707 215286868 -27377485 + AluJb SINE Alu 129 294 -18 2238 226 58 33 chr1 215287128 215287680 -27376673 - MER21B LTR ERV1 -9 854 289 398 137 84 21 chr1 215287687 215287782 -27376571 - L1PA16 LINE L1 0 6166 6066 512 126 0 16 chr1 215287782 215287853 -27376500 + L1P4 LINE L1 5407 5472 -691 722 129 47 47 chr1 215287853 215288024 -27376329 - L1MA3 LINE L1 0 6305 6135 1772 79 20 12 chr1 215288024 215288261 -27376092 - L1PA8 LINE L1 -1 6171 5917 1146 231 131 0 chr1 215288272 215288532 -27375821 - MER21B LTR ERV1 -558 305 12 1372 161 57 109 chr1 215288544 215288929 -27375424 + MLT1A1 LTR MaLR 1 365 0 427 284 54 7 chr1 215288941 215289089 -27375264 - L2 LINE L2 0 3313 3159 223 257 108 0 chr1 215289173 215289247 -27375106 + MIR SINE MIR 90 171 -91 313 307 102 0 chr1 215289254 215289430 -27374923 + L2 LINE L2 2725 2918 -396 200 200 0 0 chr1 215289790 215289825 -27374528 + CT-rich Low_complexity Low_complexity 2 36 0 278 282 73 9 chr1 215290435 215290545 -27373808 - MIR3 SINE MIR -7 201 85 341 274 134 85 chr1 215290990 215291297 -27373056 + L2 LINE L2 2807 3128 -144 366 260 126 8 chr1 215291353 215291480 -27372873 - MIR SINE MIR -65 197 56 546 293 56 10 chr1 215291491 215291689 -27372664 + LTR16A LTR ERVL 1 207 -243 2508 152 26 104 chr1 215291699 215292204 -27372149 - MER41D LTR ERV1 -35 522 64 2036 114 0 22 chr1 215292204 215292519 -27371834 - AluSq SINE Alu -5 308 1 2508 152 26 104 chr1 215292519 215292579 -27371774 - MER41D LTR ERV1 -493 64 1 897 200 55 10 chr1 215292579 215292778 -27371575 + LTR16A LTR ERVL 205 412 -38 298 234 31 0 chr1 215292856 215292920 -27371433 + L2 LINE L2 3207 3272 0 217 265 20 39 chr1 215293480 215293582 -27370771 + CT-rich Low_complexity Low_complexity 1 100 0 236 308 283 0 chr1 215293674 215293794 -27370559 - MIR SINE MIR -75 187 34 1953 154 52 107 chr1 215294218 215294808 -27369545 + LTR64 LTR ERVK 1 558 0 475 344 0 26 chr1 215294853 215295042 -27369311 + MIR SINE MIR 41 224 -38 2167 94 3 0 chr1 215295059 215295356 -27368997 - AluSx SINE Alu -9 303 6 1974 117 37 3 chr1 215296996 215297295 -27367058 - AluSx SINE Alu -3 309 1 201 176 0 0 chr1 215297710 215297744 -27366609 + A-rich Low_complexity Low_complexity 1 34 0 291 226 9 96 chr1 215300863 215300978 -27363375 + L2 LINE L2 638 742 -2572 1052 308 149 47 chr1 215300989 215302008 -27362345 + L2 LINE L2 1191 2313 -1001 333 275 0 0 chr1 215302016 215302107 -27362246 + LTR65 LTR ERV1 559 649 -20 359 310 35 17 chr1 215302131 215302247 -27362106 - MIR SINE MIR -142 120 3 664 207 152 61 chr1 215302297 215302495 -27361858 + MIR SINE MIR 47 262 0 2092 105 3 7 chr1 215302635 215302941 -27361412 - AluSq SINE Alu -8 305 1 244 204 82 0 chr1 215302987 215303036 -27361317 + L2 LINE L2 3209 3261 -52 3712 173 12 27 chr1 215303912 215304651 -27359702 - L1MB5 LINE L1 -1 6173 5446 282 330 67 49 chr1 215304679 215304946 -27359407 + L2 LINE L2 2986 3257 -15 21 36 0 0 chr1 215306134 215306162 -27358191 + GC_rich Low_complexity Low_complexity 1 28 0 379 332 45 57 chr1 215306580 215306827 -27357526 + L1ME LINE L1 5374 5617 -504 1099 137 88 10 chr1 215307094 215307299 -27357054 + AluJo SINE Alu 1 221 -91 749 172 178 50 chr1 215307299 215307479 -27356874 + AluJo SINE Alu 87 289 -23 444 227 127 0 chr1 215307659 215307769 -27356584 + FLAM_A SINE Alu 6 129 -13 2145 102 7 0 chr1 215307774 215308069 -27356284 + AluSx SINE Alu 1 297 -15 2780 110 31 9 chr1 215308570 215308989 -27355364 + MSTA LTR MaLR 1 428 0 2139 78 4 4 chr1 215309277 215309578 -27354775 - AluSp SINE Alu 0 302 2 204 159 23 0 chr1 215309631 215309675 -27354678 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1479 153 138 42 chr1 215310140 215310473 -27353880 + MLT1A1 LTR MaLR 1 365 0 1755 144 29 93 chr1 215310762 215311054 -27353299 - MLT1B LTR MaLR 0 390 131 1628 129 81 15 chr1 215311054 215311325 -27353028 - AluJo SINE Alu -21 291 3 1755 144 29 93 chr1 215311325 215311449 -27352904 - MLT1B LTR MaLR -259 131 1 22 0 0 0 chr1 215312352 215312374 -27351979 + AT_rich Low_complexity Low_complexity 1 22 0 2336 86 3 25 chr1 215312557 215312871 -27351482 - AluSp SINE Alu -6 307 1 2090 125 26 3 chr1 215314209 215314514 -27349839 + AluSx SINE Alu 1 312 0 271 333 69 16 chr1 215315659 215315848 -27348505 + L1MC4 LINE L1 6804 7002 -1040 301 158 0 0 chr1 215316554 215316611 -27347742 + L1PA16 LINE L1 6101 6157 -9 250 295 48 60 chr1 215317382 215317548 -27346805 + MIR3 SINE MIR 30 193 -15 2044 128 30 10 chr1 215318012 215318495 -27345858 + AluSx SINE Alu 3 312 0 3759 139 32 15 chr1 215318841 215319554 -27344799 - L1MB3 LINE L1 -171 6012 5288 2144 118 14 0 chr1 215319576 215319864 -27344489 - AluSx SINE Alu -20 292 1 2130 122 0 0 chr1 215320057 215320343 -27344010 + AluSx SINE Alu 7 292 -20 22 56 0 0 chr1 215320682 215320718 -27343635 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr1 215321498 215321520 -27342833 + (CA)n Simple_repeat Simple_repeat 2 23 0 203 136 45 0 chr1 215321521 215321565 -27342788 + (TA)n Simple_repeat Simple_repeat 1 46 0 221 0 0 33 chr1 215321565 215321595 -27342758 + (TG)n Simple_repeat Simple_repeat 2 30 0 2330 114 0 0 chr1 215321816 215322122 -27342231 + AluSx SINE Alu 3 308 -4 1378 232 41 49 chr1 215322126 215322657 -27341696 + LTR55 LTR ERV 1 527 -21 264 227 73 18 chr1 215322697 215322807 -27341546 + L1ME4a LINE L1 5967 6082 -39 185 204 45 0 chr1 215323350 215323394 -27340959 - L2 LINE L2 -18 3254 3209 180 224 135 83 chr1 215323613 215323769 -27340584 + L3 LINE CR1 184 347 -1230 2188 128 0 3 chr1 215325154 215325459 -27338894 + AluSc SINE Alu 1 304 -5 881 173 24 23 chr1 215326062 215326340 -27338013 - L1MEc LINE L1 -3884 2500 2258 5606 124 25 18 chr1 215326358 215326406 -27337947 - L1MA8 LINE L1 -4 6287 6241 1872 171 3 7 chr1 215326406 215326711 -27337642 - AluJb SINE Alu -8 304 1 5606 124 25 18 chr1 215326711 215327800 -27336553 - L1MA8 LINE L1 -50 6241 5142 614 241 130 44 chr1 215327807 215328738 -27335615 - L1MEc LINE L1 -4257 2306 1457 2145 100 24 0 chr1 215328738 215328901 -27335452 - AluY SINE Alu -13 298 123 198 0 0 0 chr1 215328901 215328923 -27335430 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2145 100 24 0 chr1 215328923 215329050 -27335303 - AluY SINE Alu -188 123 1 614 241 130 44 chr1 215329050 215329338 -27335015 - L1MEc LINE L1 -5106 1457 1195 1495 86 0 0 chr1 215329338 215329525 -27334828 - AluSp SINE Alu -1 312 126 2450 82 7 0 chr1 215329525 215329830 -27334523 - AluSx SINE Alu -4 308 2 614 241 130 44 chr1 215329830 215330381 -27333972 - L1MEc LINE L1 -5367 1196 289 316 270 45 0 chr1 215330409 215330498 -27333855 - L1MEc LINE L1 -6270 293 201 2016 135 4 0 chr1 215330613 215330894 -27333459 - AluJb SINE Alu -30 282 1 2789 7 0 0 chr1 215331179 215331483 -27332870 - AluYa5 SINE Alu -7 304 1 21 0 0 0 chr1 215332269 215332290 -27332063 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr1 215334050 215334086 -27330267 + AT_rich Low_complexity Low_complexity 1 36 0 1386 285 98 8 chr1 215335409 215335960 -27328393 + L2 LINE L2 2711 3313 0 281 356 34 68 chr1 215336565 215336649 -27327704 - MIR3 SINE MIR -27 181 105 2158 106 11 0 chr1 215336649 215336931 -27327422 + AluSg SINE Alu 12 296 -14 281 356 34 68 chr1 215336931 215337023 -27327330 - MIR3 SINE MIR -103 105 11 900 210 105 18 chr1 215337128 215337357 -27326996 - MIR SINE MIR 0 262 14 194 167 259 0 chr1 215337431 215337485 -27326868 + MIR SINE MIR 124 191 -71 842 207 35 6 chr1 215338213 215338387 -27325966 + MER5A DNA MER1_type 11 189 0 2684 260 80 23 chr1 215340695 215341614 -27322739 - L2 LINE L2 -309 3004 2036 233 289 39 19 chr1 215341665 215341769 -27322584 + L2 LINE L2 3202 3307 -6 352 321 40 76 chr1 215342436 215342713 -27321640 + L2 LINE L2 2995 3261 -11 21 36 0 0 chr1 215343284 215343312 -27321041 + AT_rich Low_complexity Low_complexity 1 28 0 26 74 0 0 chr1 215345515 215345569 -27318784 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr1 215346125 215346149 -27318204 + AT_rich Low_complexity Low_complexity 1 24 0 1765 189 0 17 chr1 215347195 215347496 -27316857 + AluJb SINE Alu 1 296 -16 341 265 99 38 chr1 215347623 215347797 -27316556 - L1ME4a LINE L1 -223 5898 5710 23480 153 28 21 chr1 215348661 215355111 -27309242 - L1PA10 LINE L1 -3 6480 11 1717 178 44 36 chr1 215355159 215355519 -27308834 - MLT1A1 LTR MaLR 0 365 3 1802 197 65 3 chr1 215355779 215356150 -27308203 + MSTD LTR MaLR 1 394 -2 397 218 0 0 chr1 215356685 215356763 -27307590 - MER58B DNA MER1_type 0 341 264 291 287 17 43 chr1 215356776 215356891 -27307462 + L1MC4a LINE L1 5415 5526 -2282 21 36 0 0 chr1 215356929 215356957 -27307396 + AT_rich Low_complexity Low_complexity 1 28 0 430 281 98 75 chr1 215357205 215357432 -27306921 + L1MC4a LINE L1 5725 5964 -1844 1590 170 6 64 chr1 215357432 215357762 -27306591 - AluJo SINE Alu -1 311 1 430 281 98 75 chr1 215357762 215357869 -27306484 + L1MC4a LINE L1 5964 6067 -1741 22 0 0 0 chr1 215358589 215358611 -27305742 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr1 215359013 215359036 -27305317 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2117 123 3 0 chr1 215359039 215359323 -27305030 - AluSq SINE Alu -25 288 4 251 337 22 17 chr1 215359625 215359806 -27304547 - HAL1 LINE L1 -848 1659 1478 1144 79 0 0 chr1 215359806 215359946 -27304407 - AluY SINE Alu -15 296 157 476 306 100 33 chr1 215359978 215360279 -27304074 - HAL1 LINE L1 -1053 1454 1134 22 35 0 0 chr1 215360418 215360447 -27303906 + AT_rich Low_complexity Low_complexity 1 29 0 494 258 65 32 chr1 215361603 215361758 -27302595 - MIR SINE MIR 0 262 103 201 213 0 0 chr1 215361805 215361852 -27302501 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 608 280 50 67 chr1 215362145 215362384 -27301969 - MIR SINE MIR -15 247 13 430 212 0 0 chr1 215362664 215362749 -27301604 + MIR SINE MIR 146 230 -32 354 262 128 13 chr1 215362777 215362926 -27301427 + L2 LINE L2 2225 2390 -924 257 324 114 9 chr1 215363173 215363278 -27301075 + L2 LINE L2 3150 3265 -7 2262 174 36 5 chr1 215363455 215363868 -27300485 + MSTB LTR MaLR 1 426 0 4199 149 28 19 chr1 215366326 215367164 -27297189 + L1MB1 LINE L1 5205 6052 -116 827 173 54 5 chr1 215367164 215367345 -27297008 + L1MB1 LINE L1 5967 6160 -8 858 141 39 0 chr1 215367791 215367919 -27296434 - FLAM_C SINE Alu 0 133 1 471 312 168 35 chr1 215367971 215368535 -27295818 - L2 LINE L2 -1061 2253 1615 1971 140 14 0 chr1 215369889 215370182 -27294171 - AluSx SINE Alu -15 297 1 204 315 34 34 chr1 215371034 215371123 -27293230 - L2 LINE L2 -1857 1457 1369 442 306 38 25 chr1 215371248 215371408 -27292945 + L2 LINE L2 3152 3313 0 205 425 12 0 chr1 215371493 215371573 -27292780 + L2 LINE L2 3106 3186 -86 2129 111 7 3 chr1 215372108 215372406 -27291947 - AluSx SINE Alu -13 299 1 2232 101 0 0 chr1 215372408 215372694 -27291659 - AluSx SINE Alu -14 298 13 1747 160 44 3 chr1 215373814 215374107 -27290246 - AluJb SINE Alu -7 305 1 24 0 0 0 chr1 215375059 215375083 -27289270 + AT_rich Low_complexity Low_complexity 1 24 0 397 215 156 21 chr1 215375348 215375534 -27288819 + L1ME LINE L1 5609 5819 -302 2373 92 0 0 chr1 215377226 215377530 -27286823 - AluY SINE Alu -7 304 1 21 36 0 0 chr1 215377918 215377946 -27286407 + AT_rich Low_complexity Low_complexity 1 28 0 186 263 140 0 chr1 215380543 215380600 -27283753 + MIR SINE MIR 124 188 -74 34 55 0 0 chr1 215380656 215380711 -27283642 + AT_rich Low_complexity Low_complexity 1 55 0 405 241 66 58 chr1 215381961 215382098 -27282255 - L2 LINE L2 0 3313 3176 244 173 0 77 chr1 215382282 215382334 -27282019 - L2 LINE L2 -222 3050 3003 1783 155 0 14 chr1 215382423 215382745 -27281608 + AluJo SINE Alu 14 331 0 23 68 0 0 chr1 215384207 215384251 -27280102 + AT_rich Low_complexity Low_complexity 1 44 0 2307 91 0 0 chr1 215384689 215385013 -27279340 + AluSx SINE Alu 1 324 0 35615 83 9 14 chr1 215385031 215391201 -27273152 + L1PA6 LINE L1 11 6149 -5 302 0 26 0 chr1 215391207 215391245 -27273108 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 28 61 0 0 chr1 215391968 215392017 -27272336 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr1 215392171 215392192 -27272161 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 215392241 215392262 -27272091 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 215393478 215393500 -27270853 + AT_rich Low_complexity Low_complexity 1 22 0 613 220 134 69 chr1 215393603 215393835 -27270518 + MIR SINE MIR 3 249 -13 22 0 0 0 chr1 215393894 215393916 -27270437 + AT_rich Low_complexity Low_complexity 1 22 0 675 239 31 0 chr1 215394240 215394399 -27269954 + L2 LINE L2 3149 3312 -1 2226 74 0 77 chr1 215395503 215395839 -27268514 + AluY SINE Alu 1 310 -1 1795 142 55 0 chr1 215397734 215398009 -27266344 - AluJb SINE Alu -22 290 1 266 0 29 0 chr1 215398302 215398336 -27266017 + (TA)n Simple_repeat Simple_repeat 2 36 0 222 260 135 19 chr1 215398530 215398634 -27265719 + MIR3 SINE MIR 54 169 -39 4308 133 24 43 chr1 215399176 215400028 -27264325 + L1MB3 LINE L1 5342 6176 -7 21 0 0 0 chr1 215400192 215400213 -27264140 + AT_rich Low_complexity Low_complexity 1 21 0 698 340 132 12 chr1 215400390 215401201 -27263152 + L2 LINE L2 1995 2902 -412 840 222 47 24 chr1 215401201 215401413 -27262940 + HERVL40 LTR ERVL 2537 2753 -2777 314 211 0 0 chr1 215401411 215401468 -27262885 - HERVL40 LTR ERVL -1471 4059 4003 * 199 68 0 68 chr1 215401493 215401537 -27262816 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 1405 151 87 20 chr1 215401542 215401841 -27262512 - L1MC1 LINE L1 -6 6327 6009 1101 174 43 16 chr1 215404109 215404316 -27260037 + MLT1A1 LTR MaLR 1 254 -111 7397 127 55 20 chr1 215404316 215405551 -27258802 + MER52C LTR ERV1 1 1278 0 1101 174 43 16 chr1 215405551 215405667 -27258686 + MLT1A1 LTR MaLR 254 365 0 353 331 40 11 chr1 215405739 215405914 -27258439 - L1MC1 LINE L1 -1876 5932 5753 290 301 97 0 chr1 215406075 215406281 -27258072 - L1MC1 LINE L1 -662 5500 5275 292 219 141 45 chr1 215406326 215406595 -27257758 - L1M4 LINE L1 -812 5334 5040 290 292 0 23 chr1 215406958 215407088 -27257265 + L1M4 LINE L1 3359 3485 -2661 6397 66 16 63 chr1 215407187 215409028 -27255325 - SVA Other Other -551 1382 32 266 258 93 93 chr1 215409874 215410025 -27254328 - L2 LINE L2 -913 2401 2251 21 0 0 0 chr1 215410171 215410192 -27254161 + AT_rich Low_complexity Low_complexity 1 21 0 1500 197 62 3 chr1 215411079 215411404 -27252949 + MER2 DNA MER2_type 1 344 0 1326 132 7 3 chr1 215411624 215411837 -27252516 - AluSp SINE Alu -19 294 104 248 111 22 0 chr1 215412281 215412326 -27252027 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 761 241 125 13 chr1 215412332 215412556 -27251797 - MIR SINE MIR -13 249 1 201 338 12 38 chr1 215412648 215412728 -27251625 + L3 LINE CR1 1478 1555 -22 2005 152 3 0 chr1 215412802 215413105 -27251248 + AluSx SINE Alu 1 304 -8 199 324 92 78 chr1 215413270 215413554 -27250799 + L2 LINE L2 2980 3267 -5 216 250 117 0 chr1 215413986 215414046 -27250307 - MIR SINE MIR -109 99 33 283 282 18 55 chr1 215414061 215414171 -27250182 + L2 LINE L2 2986 3091 -181 1150 141 0 11 chr1 215415559 215415736 -27248617 + AluJb SINE Alu 125 299 -13 2691 152 34 0 chr1 215417028 215417442 -27246911 - MSTA LTR MaLR 0 428 1 208 254 48 48 chr1 215417640 215417703 -27246650 - MER5A DNA MER1_type -32 157 95 562 265 40 0 chr1 215417891 215418042 -27246311 + MIR SINE MIR 98 254 -8 1405 220 61 38 chr1 215418469 215418986 -27245367 - MLT1E LTR MaLR 0 593 1 2030 110 7 0 chr1 215419643 215419953 -27244400 + AluSx SINE Alu 1 312 0 494 345 6 6 chr1 215421405 215421573 -27242780 - L2 LINE L2 0 3313 3146 2131 109 6 37 chr1 215422468 215422789 -27241564 + AluSx SINE Alu 1 311 -1 2007 168 95 13 chr1 215422843 215423223 -27241130 + MSTB LTR MaLR 16 426 0 303 319 0 50 chr1 215424077 215424196 -27240157 + L2 LINE L2 3195 3307 -6 372 344 122 36 chr1 215424275 215424495 -27239858 - L2 LINE L2 -2065 1249 1049 1877 160 0 13 chr1 215424495 215424795 -27239558 + AluJo SINE Alu 3 298 -14 372 344 122 36 chr1 215424795 215425205 -27239148 - L2 LINE L2 -2265 1049 565 525 326 13 30 chr1 215425215 215425448 -27238905 - LTR16C LTR ERVL -11 480 252 231 36 0 0 chr1 215426083 215426111 -27238242 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 315 0 0 0 chr1 215426110 215426145 -27238208 + (TG)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr1 215426144 215426164 -27238189 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 2279 205 98 24 chr1 215426566 215427117 -27237236 - MLT1E LTR MaLR -1 592 1 668 279 127 54 chr1 215427184 215427593 -27236760 - MLT1J LTR MaLR -38 473 35 25 0 0 0 chr1 215428053 215428078 -27236275 + AT_rich Low_complexity Low_complexity 1 25 0 367 313 0 0 chr1 215428949 215429061 -27235292 - MIR SINE MIR -1 261 150 2011 129 0 3 chr1 215429069 215429355 -27234998 + AluSx SINE Alu 9 293 -19 234 326 126 11 chr1 215429465 215429560 -27234793 - MIR SINE MIR -136 126 21 386 289 60 60 chr1 215429727 215429893 -27234460 - L2 LINE L2 0 3272 3107 877 341 49 13 chr1 215430213 215430665 -27233688 - L2 LINE L2 -555 2759 2292 292 234 23 78 chr1 215431097 215431225 -27233128 + L1ME4a LINE L1 5951 6071 -50 526 183 412 0 chr1 215432415 215432568 -27231785 + MER20 DNA MER1_type 4 219 0 262 307 136 7 chr1 215432900 215433040 -27231313 - MER5B DNA MER1_type -20 158 1 470 261 25 25 chr1 215433638 215433757 -27230596 + MIR3 SINE MIR 88 206 -2 299 325 51 0 chr1 215434160 215434277 -27230076 - L2 LINE L2 0 3272 3150 312 285 90 28 chr1 215435837 215435981 -27228372 - MIR SINE MIR -79 183 31 391 242 117 17 chr1 215436037 215436157 -27228196 - L2 LINE L2 0 3313 3182 6657 82 18 0 chr1 215436675 215437726 -27226627 - L1PA10 LINE L1 -17 6151 5071 15925 127 27 12 chr1 215438988 215441370 -27222983 - Tigger1 DNA MER2_type 0 2418 1 201 247 164 0 chr1 215441590 215441663 -27222690 - MIR SINE MIR -15 247 163 350 386 43 5 chr1 215441935 215442119 -27222234 - L2 LINE L2 -217 3055 2865 272 164 82 55 chr1 215442785 215442858 -27221495 + MIR SINE MIR 95 169 -93 653 202 82 19 chr1 215443146 215443354 -27220999 - MER5C DNA MER1_type -3 321 101 243 283 100 33 chr1 215443426 215443546 -27220807 - MER5C DNA MER1_type -196 128 1 1995 118 7 7 chr1 215444325 215444605 -27219748 + AluSx SINE Alu 1 280 -32 370 262 43 30 chr1 215444924 215444984 -27219369 - MER112 DNA MER1_type -94 166 108 2249 109 0 0 chr1 215444984 215445278 -27219075 - AluSx SINE Alu -18 294 1 370 262 43 30 chr1 215445278 215445381 -27218972 - MER112 DNA MER1_type -152 108 1 307 318 152 13 chr1 215445392 215445543 -27218810 - MER5A DNA MER1_type -3 186 15 279 261 96 64 chr1 215445635 215445739 -27218614 + MIR SINE MIR 87 199 -63 934 201 29 6 chr1 215445739 215445913 -27218440 - MER45A DNA AcHobo 0 178 1 279 261 96 64 chr1 215445913 215445965 -27218388 + MIR SINE MIR 199 248 -14 210 326 11 56 chr1 215446807 215446896 -27217457 + L2 LINE L2 3107 3191 -81 319 292 0 0 chr1 215448010 215448099 -27216254 - L2 LINE L2 -1 3271 3183 252 367 0 7 chr1 215448205 215448355 -27215998 + A-rich Low_complexity Low_complexity 4 152 0 * 291 340 18 31 chr1 215448246 215448473 -27215880 + GA-rich Low_complexity Low_complexity 1 223 0 243 277 21 11 chr1 215448499 215448593 -27215760 + A-rich Low_complexity Low_complexity 5 99 0 468 254 0 8 chr1 215448668 215448798 -27215555 + AluSg/x SINE Alu 171 299 -11 2177 73 0 7 chr1 215449922 215450197 -27214156 - AluY SINE Alu -3 308 36 540 289 92 57 chr1 215450390 215450544 -27213809 + L1 LINE L1 3684 3831 -2315 1946 142 7 3 chr1 215450544 215450840 -27213513 - AluSx SINE Alu -13 299 3 540 289 92 57 chr1 215450840 215451190 -27213163 + L1 LINE L1 3831 4223 -1923 3326 148 26 6 chr1 215451190 215451731 -27212622 - L1MA4A LINE L1 -4 6299 5748 540 289 92 57 chr1 215451731 215451942 -27212411 + L1 LINE L1 4223 4425 -1721 285 217 7 16 chr1 215451952 215452051 -27212302 + L1MEd LINE L1 1266 1445 -4927 1927 163 38 0 chr1 215452052 215452372 -27211981 + MER7A DNA MER2_type 1 330 -16 347 203 0 0 chr1 215452390 215452459 -27211894 + L1MEd LINE L1 1484 1552 -5011 799 266 54 12 chr1 215452894 215453135 -27211218 + MIR SINE MIR 12 262 0 4499 144 22 47 chr1 215453606 215455014 -27209339 - pTR5 LTR ERV1 0 2438 741 2292 103 0 10 chr1 215457029 215457340 -27207013 + AluSg SINE Alu 1 308 -2 656 121 20 0 chr1 215457732 215457831 -27206522 - L1MA3 LINE L1 0 6305 6205 2131 122 12 15 chr1 215457899 215458235 -27206118 - L1MA3 LINE L1 -92 6213 5879 246 128 0 0 chr1 215458367 215458406 -27205947 + (T)n Simple_repeat Simple_repeat 1 39 0 763 204 27 84 chr1 215459211 215459322 -27205031 - MIR SINE MIR 0 262 169 2185 117 0 0 chr1 215459322 215459612 -27204741 - AluSg SINE Alu -20 290 1 763 204 27 84 chr1 215459612 215459725 -27204628 - MIR SINE MIR -93 169 51 5386 145 40 9 chr1 215460169 215461075 -27203278 - L1MC1 LINE L1 -102 6231 5298 539 240 0 0 chr1 215461075 215461175 -27203178 - HERVL40 LTR ERVL -1547 3983 3884 21 57 0 0 chr1 215461982 215462017 -27202336 + AT_rich Low_complexity Low_complexity 1 35 0 2283 244 78 11 chr1 215462575 215462979 -27201374 - MLT1E LTR MaLR 0 593 141 543 31 0 0 chr1 215462979 215463044 -27201309 + (TATAA)n Simple_repeat Simple_repeat 2 66 0 2283 244 78 11 chr1 215463044 215463188 -27201165 - MLT1E LTR MaLR -452 141 8 24 0 0 0 chr1 215463494 215463518 -27200835 + AT_rich Low_complexity Low_complexity 1 24 0 1306 168 180 15 chr1 215464641 215464974 -27199379 + MLT1B LTR MaLR 1 388 -2 951 263 56 38 chr1 215467043 215467405 -27196948 + L1ME LINE L1 5331 5702 -468 246 253 0 24 chr1 215467501 215467584 -27196769 + L1ME LINE L1 5747 5827 -335 2366 86 3 3 chr1 215467586 215467888 -27196465 + AluSq SINE Alu 1 302 -11 438 94 0 0 chr1 215467891 215467955 -27196398 + (GA)n Simple_repeat Simple_repeat 2 65 0 432 97 0 0 chr1 215467941 215468003 -27196350 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 * 242 338 80 22 chr1 215468807 215469032 -27195321 - L2 LINE L2 -194 3078 2841 258 105 0 0 chr1 215469243 215469281 -27195072 + (TG)n Simple_repeat Simple_repeat 2 39 0 2087 92 3 64 chr1 215471290 215471604 -27192749 + AluSc SINE Alu 1 295 -14 244 392 74 17 chr1 215472735 215472911 -27191442 + MER91A DNA MER1_type 1 186 -10 23 33 0 0 chr1 215474105 215474135 -27190218 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 215474735 215474756 -27189597 + AT_rich Low_complexity Low_complexity 1 21 0 1781 161 28 3 chr1 215474763 215475054 -27189299 - AluJb SINE Alu -14 298 1 201 269 30 0 chr1 215475153 215475220 -27189133 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 22 0 0 0 chr1 215475929 215475951 -27188402 + AT_rich Low_complexity Low_complexity 1 22 0 2056 123 3 10 chr1 215476110 215476410 -27187943 + AluSx SINE Alu 1 298 -14 282 380 36 7 chr1 215477436 215477573 -27186780 + L2 LINE L2 3112 3252 -20 1115 203 0 0 chr1 215477574 215477761 -27186592 + MER5A DNA MER1_type 1 187 -2 1662 168 53 3 chr1 215477971 215478137 -27186216 - AluJb SINE Alu -13 299 112 207 0 0 0 chr1 215478137 215478160 -27186193 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1662 168 53 3 chr1 215478160 215478278 -27186075 - AluJb SINE Alu -200 112 1 654 284 79 26 chr1 215478730 215479101 -27185252 + MLT1H LTR MaLR 51 541 -14 899 142 26 0 chr1 215479235 215479561 -27184792 + GA-rich Low_complexity Low_complexity 1 334 0 197 300 171 0 chr1 215479613 215479683 -27184670 + L2 LINE L2 3197 3278 -35 1357 306 33 47 chr1 215480805 215481678 -27182675 + L1ME LINE L1 6 866 -5204 294 162 68 60 chr1 215481678 215481795 -27182558 + (CACTA)n Simple_repeat Simple_repeat 4 121 0 1345 268 122 32 chr1 215481797 215481940 -27182413 + L1ME LINE L1 913 1042 -5219 2267 89 0 0 chr1 215481940 215482248 -27182105 + AluY SINE Alu 1 308 0 1345 268 122 32 chr1 215482248 215482407 -27181946 + L1ME LINE L1 1042 1185 -5076 270 56 0 0 chr1 215482407 215482443 -27181910 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1345 268 122 32 chr1 215482443 215482959 -27181394 + L1ME LINE L1 1185 1807 -4454 308 165 52 87 chr1 215482945 215483022 -27181331 + L1ME LINE L1 2451 2524 -3556 * 2279 107 0 3 chr1 215483022 215483331 -27181022 + AluSp SINE Alu 3 310 -3 308 165 52 87 chr1 215483331 215483368 -27180985 + L1ME LINE L1 2524 2561 -3519 2114 151 6 0 chr1 215483527 215483845 -27180508 + 7SLRNA srpRNA srpRNA 1 320 0 238 232 36 18 chr1 215485289 215485345 -27179008 + L2 LINE L2 2988 3044 -228 24 53 0 0 chr1 215485444 215485482 -27178871 + AT_rich Low_complexity Low_complexity 1 38 0 963 274 75 71 chr1 215485890 215486770 -27177583 + L1MC/D LINE L1 4881 5766 -759 882 308 27 10 chr1 215486943 215487328 -27177025 + L2 LINE L2 2695 3087 -226 321 236 142 19 chr1 215487568 215487674 -27176679 + L1M4 LINE L1 2211 2329 -3817 505 269 114 20 chr1 215487679 215487880 -27176473 + MIR SINE MIR 12 231 -31 656 263 69 42 chr1 215488172 215488434 -27175919 + L1MC4a LINE L1 5604 5872 -1936 370 372 82 9 chr1 215489369 215489600 -27174753 - MIR SINE MIR 0 262 15 575 251 35 29 chr1 215491734 215491905 -27172448 + MIR SINE MIR 7 178 -84 515 314 110 38 chr1 215491883 215492173 -27172180 + L2 LINE L2 3002 3312 -1 * 184 182 0 0 chr1 215492201 215492234 -27172119 + MIR SINE MIR 230 262 0 976 220 65 48 chr1 215492589 215492926 -27171427 - MER2 DNA MER2_type 0 344 2 1924 142 0 19 chr1 215493069 215493378 -27170975 - AluSx SINE Alu -9 303 1 21 0 0 0 chr1 215493679 215493700 -27170653 + AT_rich Low_complexity Low_complexity 1 21 0 1482 119 50 0 chr1 215494080 215494299 -27170054 + MER30 DNA MER1_type 1 230 0 726 320 39 12 chr1 215494365 215494699 -27169654 + L2 LINE L2 925 1267 -2047 2689 210 18 4 chr1 215494715 215495230 -27169123 + Tigger7 DNA MER2_type 1 522 -1965 374 128 0 128 chr1 215495242 215495279 -27169074 + Tigger7 DNA MER2_type 2520 2544 -43 2192 128 33 28 chr1 215495279 215495639 -27168714 + THE1B LTR MaLR 3 364 0 374 128 0 128 chr1 215495639 215495679 -27168674 + Tigger7 DNA MER2_type 2544 2587 0 1222 287 165 25 chr1 215495680 215496412 -27167941 + L2 LINE L2 1321 2155 -1159 337 158 44 35 chr1 215496413 215496527 -27167826 - L1MEd LINE L1 -2920 3209 3095 502 291 186 24 chr1 215496666 215497160 -27167193 - L1MEd LINE L1 -3426 2703 2130 1788 151 3 14 chr1 215497386 215497716 -27166637 - AluJb SINE Alu 0 329 3 1849 143 56 0 chr1 215497986 215498273 -27166080 - AluSx SINE Alu -9 303 1 892 319 94 44 chr1 215498493 215499595 -27164758 - L1MEd LINE L1 -4862 1257 100 1146 297 71 37 chr1 215499677 215500242 -27164111 + L2 LINE L2 2139 2722 -592 12571 240 90 37 chr1 215500351 215501024 -27163329 + ERVL-F LTR ERVL 2011 2647 -3117 1105 217 9 0 chr1 215501024 215501241 -27163112 - MER20 DNA MER1_type 0 219 1 12571 240 90 37 chr1 215501241 215504132 -27160221 + ERVL-F LTR ERVL 2647 5764 0 1792 253 117 20 chr1 215504138 215504728 -27159625 + MLT2F LTR ERVL 15 661 -2 1724 178 0 4 chr1 215504926 215505207 -27159146 + AluJb SINE Alu 15 294 -18 368 234 208 26 chr1 215505698 215505852 -27158501 - MIR SINE MIR -77 185 4 972 261 27 23 chr1 215506169 215506429 -27157924 - MIR SINE MIR 0 262 2 26 0 0 0 chr1 215506774 215506800 -27157553 + AT_rich Low_complexity Low_complexity 1 26 0 1865 120 7 58 chr1 215506800 215507108 -27157245 - AluSx SINE Alu -20 292 1 241 245 0 0 chr1 215507460 215507513 -27156840 - L2 LINE L2 -4 3268 3216 2280 82 0 7 chr1 215507706 215507998 -27156355 + AluY SINE Alu 7 296 -15 2206 100 10 7 chr1 215508566 215508875 -27155478 - AluSx SINE Alu -2 310 1 1550 165 109 71 chr1 215509292 215509741 -27154612 - MER31B LTR ERV1 0 466 1 1831 153 27 10 chr1 215509826 215510126 -27154227 + AluJb SINE Alu 1 305 -7 228 382 36 0 chr1 215510556 215510666 -27153687 + L2 LINE L2 3103 3216 -56 2069 156 15 32 chr1 215510924 215511327 -27153026 - MSTD LTR MaLR 0 396 1 963 244 188 2 chr1 215512152 215512616 -27151737 - Charlie7 DNA MER1_type -179 2433 1884 228 233 50 0 chr1 215512781 215512841 -27151512 + L1MEd LINE L1 351 413 -5959 305 196 73 186 chr1 215512972 215513466 -27150887 + L1MEd LINE L1 785 1222 -5150 1989 224 53 9 chr1 215513557 215514229 -27150124 + L1MEd LINE L1 2251 2959 -3423 1740 176 52 36 chr1 215514227 215514333 -27150020 + L1MEd LINE L1 3177 3280 -3102 * 2093 135 3 0 chr1 215514333 215514629 -27149724 + AluSx SINE Alu 1 297 -15 1740 176 52 36 chr1 215514629 215514999 -27149354 + L1MEd LINE L1 3280 3661 -2721 1634 224 13 5 chr1 215514999 215515456 -27148897 + MLT2B1 LTR ERVL 2 507 -8 4667 195 61 64 chr1 215515458 215516061 -27148292 + L1MB1 LINE L1 3654 4258 -2146 14874 22 7 0 chr1 215516061 215518474 -27145879 + L1PA3 LINE L1 3717 6155 0 747 101 73 0 chr1 215518474 215518583 -27145770 + L1PA11 LINE L1 6057 6173 -1 4667 195 61 64 chr1 215518583 215518685 -27145668 + L1MB1 LINE L1 4257 4358 -2046 2047 103 3 82 chr1 215518685 215519004 -27145349 + AluSx SINE Alu 1 294 -18 4667 195 61 64 chr1 215519004 215520975 -27143378 + L1MB1 LINE L1 4354 6326 -74 2194 150 66 16 chr1 215520975 215521397 -27142956 + L1MA4 LINE L1 5847 6293 -7 21 0 0 0 chr1 215521418 215521439 -27142914 + AT_rich Low_complexity Low_complexity 1 21 0 425 122 40 14 chr1 215521477 215521551 -27142802 + L1MB1 LINE L1 6329 6404 0 441 339 58 4 chr1 215521551 215522103 -27142250 + L1MEd LINE L1 948 1672 -4638 1704 166 0 17 chr1 215522541 215522831 -27141522 - AluJb SINE Alu -16 296 12 207 245 94 0 chr1 215523117 215523170 -27141183 - L2 LINE L2 -38 3234 3177 228 214 180 34 chr1 215524511 215524600 -27139753 + L2 LINE L2 3149 3250 -63 21 0 0 0 chr1 215526943 215526964 -27137389 + GC_rich Low_complexity Low_complexity 1 21 0 331 247 148 72 chr1 215527229 215527452 -27136901 + L1M2 LINE L1 452 691 -6158 333 68 0 0 chr1 215527490 215527534 -27136819 + (TCC)n Simple_repeat Simple_repeat 1 44 0 273 57 0 0 chr1 215527717 215527752 -27136601 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 346 193 182 0 chr1 215530338 215530426 -27133927 + Charlie5 DNA MER1_type 24 127 -2485 * 1583 194 18 21 chr1 215530425 215530812 -27133541 + Charlie5 DNA MER1_type 2238 2623 0 425 304 74 87 chr1 215531725 215532129 -27132224 + L2 LINE L2 2864 3262 -10 372 252 61 9 chr1 215533223 215533338 -27131015 - L2 LINE L2 0 3313 3193 340 271 5 18 chr1 215537680 215538129 -27126224 + (CA)n Simple_repeat Simple_repeat 1 442 0 1874 139 26 0 chr1 215538619 215538922 -27125431 - MSTA-int LTR MaLR -1340 311 1 1958 172 116 5 chr1 215538922 215539300 -27125053 - MSTA LTR MaLR 0 428 9 932 260 97 21 chr1 215539430 215539861 -27124492 - MLT1D LTR MaLR -19 486 23 1293 101 15 35 chr1 215640218 215640416 -27023937 + THE1B LTR MaLR 171 364 0 7456 92 7 7 chr1 215640417 215641406 -27022947 + THE1B-int LTR MaLR 2 990 -590 324 106 21 0 chr1 215641407 215641454 -27022899 + THE1A LTR MaLR 308 355 0 231 277 153 30 chr1 215641464 215641699 -27022654 + L1MC4a LINE L1 4815 5078 -1068 312 311 52 48 chr1 215641705 215641975 -27022378 + L1MC4a LINE L1 5118 5388 -758 2035 247 90 24 chr1 215641982 215642661 -27021692 + L1MC4a LINE L1 5523 6246 -1562 190 301 72 12 chr1 215643508 215643591 -27020762 + MIR3 SINE MIR 112 199 -9 216 97 0 0 chr1 215643616 215643647 -27020706 + (ATATG)n Simple_repeat Simple_repeat 5 35 0 238 257 0 14 chr1 215643708 215643778 -27020575 + L2 LINE L2 2921 2989 -324 1852 168 13 10 chr1 215643782 215644086 -27020267 + MER21B LTR ERV1 1 305 -558 1104 226 213 3 chr1 215644086 215644387 -27019966 + MER21B LTR ERV1 421 784 -79 332 324 69 28 chr1 215644447 215644663 -27019690 + L2 LINE L2 3008 3232 -81 300 219 194 139 chr1 215644669 215644906 -27019447 + MIR SINE MIR 3 252 -10 187 94 19 75 chr1 215645966 215646019 -27018334 + (CCCCCA)n Simple_repeat Simple_repeat 1 50 0 1155 215 8 35 chr1 215646197 215646458 -27017895 - MLT1A2 LTR MaLR -12 362 109 189 0 0 0 chr1 215646630 215646651 -27017702 + (TC)n Simple_repeat Simple_repeat 2 22 0 220 115 0 77 chr1 215648043 215648121 -27016232 + (GGGGA)n Simple_repeat Simple_repeat 2 73 0 4438 113 7 19 chr1 215649264 215649884 -27014469 - LTR9 LTR ERV1 0 612 1 315 264 93 21 chr1 215651170 215651310 -27013043 - MIR SINE MIR -68 194 45 207 0 0 0 chr1 215651316 215651339 -27013014 + (T)n Simple_repeat Simple_repeat 1 23 0 625 236 52 17 chr1 215652373 215652547 -27011806 - MIR SINE MIR -72 190 11 926 269 30 8 chr1 215653628 215653862 -27010491 - MIR SINE MIR -21 241 3 442 296 41 12 chr1 215653994 215654166 -27010187 - MIR SINE MIR -84 178 2 22 0 0 0 chr1 215656308 215656330 -27008023 + AT_rich Low_complexity Low_complexity 1 22 0 285 230 123 91 chr1 215656373 215656560 -27007793 - L1ME LINE L1 -303 5818 5626 612 316 61 16 chr1 215656932 215657179 -27007174 - MIR SINE MIR -3 259 2 198 0 0 0 chr1 215657504 215657526 -27006827 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 2407 81 0 3 chr1 215658718 215659016 -27005337 + AluSp SINE Alu 2 298 -15 344 288 30 12 chr1 215659356 215659467 -27004886 - MIR SINE MIR -83 125 14 260 264 33 0 chr1 215660902 215660993 -27003360 + L1MC4 LINE L1 6614 6707 -1335 28 0 0 0 chr1 215662600 215662628 -27001725 + AT_rich Low_complexity Low_complexity 1 28 0 722 63 0 49 chr1 215663893 215664035 -27000318 + (TTCCC)n Simple_repeat Simple_repeat 1 135 0 203 206 22 33 chr1 215664068 215664160 -27000193 + CT-rich Low_complexity Low_complexity 4 94 0 1261 289 155 17 chr1 215665444 215666025 -26998328 - MLT2F LTR ERVL 0 663 3 459 286 0 0 chr1 215666025 215666137 -26998216 - Ricksha DNA DNA -1699 347 236 3906 265 59 33 chr1 215666137 215666167 -26998186 - ERVL-F LTR ERVL -6 5758 5730 1800 139 71 0 chr1 215666167 215666447 -26997906 + AluSx SINE Alu 1 300 -12 3906 265 59 33 chr1 215666447 215666562 -26997791 - ERVL-F LTR ERVL -34 5730 5619 1919 189 83 9 chr1 215666562 215666997 -26997356 + MLT1C LTR MaLR 1 467 0 3906 265 59 33 chr1 215666997 215668090 -26996263 - ERVL-F LTR ERVL -145 5619 4370 5055 271 76 55 chr1 215668091 215668827 -26995526 - ERVL-F LTR ERVL -1535 4229 3510 225 170 94 19 chr1 215668827 215668880 -26995473 - LTR45B LTR ERV1 -363 126 70 5055 271 76 55 chr1 215668880 215669669 -26994684 - ERVL-F LTR ERVL -2254 3510 2603 982 275 9 0 chr1 215669669 215669891 -26994462 - MER58A DNA MER1_type 0 224 1 5055 271 76 55 chr1 215669891 215670210 -26994143 - ERVL-F LTR ERVL -3161 2603 2292 1419 297 60 30 chr1 215670215 215670716 -26993637 - MLT1G1 LTR MaLR -7 588 73 238 289 0 0 chr1 215671374 215671426 -26992927 + MER63 DNA MER1_type 987 1038 -22 2418 62 0 52 chr1 215671861 215672186 -26992167 - AluY SINE Alu -3 308 1 1017 107 27 0 chr1 215672205 215672355 -26991998 - BC200 scRNA scRNA -45 155 2 523 225 53 83 chr1 215673015 215673184 -26991169 + MIR SINE MIR 10 173 -89 347 303 114 23 chr1 215673276 215673451 -26990902 + L2 LINE L2 2893 3083 -189 578 241 37 25 chr1 215673469 215673631 -26990722 - MER63A DNA MER1_type 0 210 47 316 319 89 31 chr1 215673668 215673859 -26990494 + L2 LINE L2 3112 3313 0 379 212 145 70 chr1 215675119 215675279 -26989074 - MER5A DNA MER1_type -6 183 4 254 321 37 68 chr1 215676649 215676811 -26987542 - MIR SINE MIR -56 206 50 251 240 231 39 chr1 215676882 215676986 -26987367 + MIR SINE MIR 2 125 -137 800 234 68 43 chr1 215677016 215677294 -26987059 + L1MC4 LINE L1 7598 7882 -160 1876 117 28 6 chr1 215677294 215677620 -26986733 + L1MA3 LINE L1 5973 6305 0 316 253 114 25 chr1 215677678 215677836 -26986517 + L1MC4 LINE L1 7869 8040 -2 2167 124 35 73 chr1 215678399 215678908 -26985445 + MLT2A2 LTR ERVL 1 505 -49 508 299 131 59 chr1 215678954 215679275 -26985078 + L2 LINE L2 2925 3268 -4 307 331 25 18 chr1 215679511 215679661 -26984692 - MER5A DNA MER1_type -27 162 2 248 293 114 36 chr1 215679665 215679805 -26984548 - MIR3 SINE MIR -57 151 1 458 232 8 64 chr1 215680204 215680329 -26984024 - MIR3 SINE MIR -10 198 81 347 172 35 11 chr1 215681204 215681291 -26983062 - L1MA9 LINE L1 0 6312 6224 21 0 0 0 chr1 215681550 215681571 -26982782 + AT_rich Low_complexity Low_complexity 1 21 0 1749 187 33 3 chr1 215681925 215682256 -26982097 - MER2 DNA MER2_type 0 344 4 418 288 89 28 chr1 215682409 215682894 -26981459 + L1MEd LINE L1 822 1374 -4862 414 0 0 0 chr1 215683417 215683463 -26980890 + (TG)n Simple_repeat Simple_repeat 2 47 0 716 274 90 49 chr1 215683670 215685137 -26979216 + L1MDb LINE L1 1124 2648 -3758 984 213 60 4 chr1 215685148 215685396 -26978957 - Charlie1a DNA MER1_type -399 1056 795 851 196 68 137 chr1 215685396 215685870 -26978483 - MLT1E2 LTR MaLR 0 626 65 2953 217 51 39 chr1 215685928 215686513 -26977840 - Charlie1a DNA MER1_type -1960 801 203 1089 184 58 5 chr1 215686513 215686736 -26977617 + MER46A DNA MER2_type 2 236 0 2953 217 51 39 chr1 215686736 215686941 -26977412 - Charlie1a DNA MER1_type -2558 203 2 348 175 0 0 chr1 215688427 215688484 -26975869 - L2 LINE L2 -2 3270 3214 1369 169 62 15 chr1 215689956 215690229 -26974124 + L1PB4 LINE L1 5749 6034 -122 269 291 61 27 chr1 215691249 215691397 -26972956 - L1ME4a LINE L1 -187 5934 5782 417 229 114 8 chr1 215693112 215693243 -26971110 + MIR SINE MIR 53 197 -65 278 294 12 24 chr1 215693313 215693398 -26970955 - L2 LINE L2 -1 3271 3188 525 298 53 25 chr1 215695225 215695507 -26968846 + L1ME4a LINE L1 5597 5886 -235 1138 320 28 34 chr1 215696394 215697072 -26967281 + L1ME1 LINE L1 38 711 -5685 771 235 36 29 chr1 215697100 215697406 -26966947 + L1ME1 LINE L1 4911 5289 -926 2703 265 38 31 chr1 215697511 215697629 -26966724 + L1ME1 LINE L1 5323 5439 -796 1745 161 0 7 chr1 215697629 215697942 -26966411 + AluJb SINE Alu 1 311 0 2703 265 38 31 chr1 215697942 215698724 -26965629 + L1ME1 LINE L1 5439 6230 -5 213 39 0 0 chr1 215699320 215699346 -26965007 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 1690 235 65 77 chr1 215699475 215700046 -26964307 + L1MB7 LINE L1 22 585 -5957 1643 219 60 35 chr1 215700047 215700498 -26963855 - MLT1C LTR MaLR 0 467 6 5577 243 68 37 chr1 215700504 215703527 -26960826 + L1MB7 LINE L1 592 4042 -2602 270 56 0 0 chr1 215703527 215703563 -26960790 + (CA)n Simple_repeat Simple_repeat 2 37 0 5577 243 68 37 chr1 215703563 215704134 -26960219 + L1MB7 LINE L1 4042 4594 -2050 989 156 148 9 chr1 215704134 215704482 -26959871 - MSTB LTR MaLR 0 426 1 3898 225 66 21 chr1 215704483 215705418 -26958935 + L1MB7 LINE L1 4591 5482 -1200 195 42 0 0 chr1 215705418 215705442 -26958911 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3898 225 66 21 chr1 215705442 215705840 -26958513 + L1MB7 LINE L1 5482 5861 -821 1548 212 0 10 chr1 215705840 215706142 -26958211 - AluJo SINE Alu -13 299 1 3898 225 66 21 chr1 215706142 215706328 -26958025 + L1MB7 LINE L1 5861 6037 -645 2489 47 0 47 chr1 215706328 215706649 -26957704 - AluY SINE Alu -5 306 1 3898 225 66 21 chr1 215706649 215707062 -26957291 + L1MB7 LINE L1 6037 6623 -59 248 259 6 58 chr1 215707272 215707446 -26956907 + T-rich Low_complexity Low_complexity 4 168 0 852 139 47 17 chr1 215707514 215707686 -26956667 + THE1C LTR MaLR 199 375 0 312 48 0 0 chr1 215707779 215707821 -26956532 + (ATG)n Simple_repeat Simple_repeat 1 42 0 423 286 87 39 chr1 215707892 215708098 -26956255 + L2 LINE L2 3096 3311 -2 241 343 93 0 chr1 215708349 215708489 -26955864 + L2 LINE L2 2553 2705 -609 711 332 68 46 chr1 215708528 215708983 -26955370 + L2 LINE L2 2849 3313 0 1759 175 96 54 chr1 215709079 215709508 -26954845 + MER31B LTR ERV1 11 457 -9 206 159 14 43 chr1 215709786 215709878 -26954475 + (TAA)n Simple_repeat Simple_repeat 1 89 0 1969 113 17 0 chr1 215710610 215710903 -26953450 + AluSx SINE Alu 1 298 -14 225 0 0 0 chr1 215710967 215710992 -26953361 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 602 276 39 22 chr1 215711608 215711789 -26952564 - MIR SINE MIR -43 219 36 399 333 9 9 chr1 215711868 215711976 -26952377 + L2 LINE L2 3161 3268 -4 289 237 21 97 chr1 215712330 215712423 -26951930 + MIR SINE MIR 1 86 -176 285 227 15 0 chr1 215712459 215712525 -26951828 - LTR16B LTR ERVL -89 375 309 4033 182 32 38 chr1 215712898 215713421 -26950932 + L1MB7 LINE L1 5007 5532 -652 1608 193 7 13 chr1 215713421 215713722 -26950631 - AluJo SINE Alu -13 299 1 4033 182 32 38 chr1 215713722 215713915 -26950438 + L1MB7 LINE L1 5532 5725 -459 2325 51 6 48 chr1 215713915 215714228 -26950125 - AluY SINE Alu -11 300 1 4033 182 32 38 chr1 215714228 215714675 -26949678 + L1MB7 LINE L1 5725 6163 -21 374 239 222 0 chr1 215715012 215715129 -26949224 - MER5A DNA MER1_type -13 176 34 2305 163 49 12 chr1 215715197 215715608 -26948745 - MSTB LTR MaLR 0 426 1 423 286 87 39 chr1 215716192 215716398 -26947955 - L2 LINE L2 -2 3311 3096 312 48 0 0 chr1 215716469 215716511 -26947842 + (CAT)n Simple_repeat Simple_repeat 1 42 0 1605 132 23 15 chr1 215716606 215716915 -26947438 - THE1C LTR MaLR 0 375 1 347 181 0 12 chr1 215717147 215717230 -26947123 + GA-rich Low_complexity Low_complexity 1 82 0 2151 139 31 19 chr1 215718767 215719127 -26945226 - THE1B LTR MaLR 0 364 1 246 249 150 0 chr1 215719439 215719544 -26944809 - L1M4 LINE L1 -1293 4853 4735 323 280 68 48 chr1 215719764 215719971 -26944382 + L1M4 LINE L1 3815 4025 -2121 23 33 0 0 chr1 215720123 215720153 -26944200 + AT_rich Low_complexity Low_complexity 1 30 0 3268 223 55 52 chr1 215720346 215721302 -26943051 + HsTC2 DNA Tc2 1 959 -939 243 0 0 0 chr1 215721314 215721341 -26943012 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2058 118 0 26 chr1 215721423 215721727 -26942626 + AluSq SINE Alu 4 299 -14 237 65 0 0 chr1 215722804 215722835 -26941518 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 28 0 0 0 chr1 215722920 215722948 -26941405 + AT_rich Low_complexity Low_complexity 1 28 0 2172 107 0 0 chr1 215722986 215723350 -26941003 + AluY SINE Alu 1 364 0 299 283 186 14 chr1 215723560 215723637 -26940716 - MIR3 SINE MIR -1 207 145 225 0 0 0 chr1 215723637 215723662 -26940691 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 299 283 186 14 chr1 215723662 215723729 -26940624 - MIR3 SINE MIR -63 145 38 208 179 26 0 chr1 215724012 215724051 -26940302 - MIR SINE MIR -113 149 110 21 36 0 0 chr1 215726354 215726382 -26937971 + AT_rich Low_complexity Low_complexity 1 28 0 289 330 99 24 chr1 215726464 215726676 -26937677 + MIR SINE MIR 23 250 -12 25 31 0 0 chr1 215726754 215726786 -26937567 + AT_rich Low_complexity Low_complexity 1 32 0 196 293 121 0 chr1 215727244 215727302 -26937051 - L2 LINE L2 -67 3246 3182 282 171 61 73 chr1 215727339 215727421 -26936932 - L1M4 LINE L1 -714 5464 5384 1839 177 0 0 chr1 215727440 215727745 -26936608 - AluJb SINE Alu -7 305 1 1139 305 118 51 chr1 215728087 215728461 -26935892 - L1M4 LINE L1 -1114 5032 4685 1912 138 0 28 chr1 215728461 215728751 -26935602 + AluJb SINE Alu 1 282 -30 1139 305 118 51 chr1 215728751 215729539 -26934814 - L1M4 LINE L1 -1461 4685 3792 248 200 36 0 chr1 215729558 215729613 -26934740 + MER103 DNA DNA 40 96 -70 1260 206 3 61 chr1 215729667 215729997 -26934356 - L1MA10 LINE L1 -7 6327 6017 188 136 167 121 chr1 215730377 215730443 -26933910 - MIR SINE MIR -120 142 74 526 306 61 31 chr1 215730725 215730954 -26933399 + MIR SINE MIR 26 261 -1 243 329 273 0 chr1 215731047 215731263 -26933090 - L3 LINE CR1 -355 1222 948 1206 202 65 60 chr1 215731605 215731957 -26932396 + MLT1A2 LTR MaLR 21 374 0 25 31 0 0 chr1 215732284 215732316 -26932037 + AT_rich Low_complexity Low_complexity 1 32 0 289 330 99 24 chr1 215732394 215732606 -26931747 - MIR SINE MIR -12 250 23 21 36 0 0 chr1 215732688 215732716 -26931637 + AT_rich Low_complexity Low_complexity 1 28 0 208 179 26 0 chr1 215735016 215735055 -26929298 + MIR SINE MIR 110 149 -113 279 290 186 14 chr1 215735338 215735405 -26928948 + MIR3 SINE MIR 38 92 -116 225 0 0 0 chr1 215735405 215735430 -26928923 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 279 290 186 14 chr1 215735430 215735507 -26928846 + MIR3 SINE MIR 92 207 -1 264 233 14 0 chr1 215735710 215735783 -26928570 + T-rich Low_complexity Low_complexity 2 75 0 2454 35 0 0 chr1 215735788 215736072 -26928281 - AluY SINE Alu -27 284 1 7402 140 10 5 chr1 215736072 215737227 -26927126 - Tigger1 DNA MER2_type -1236 1182 22 567 250 0 0 chr1 215737525 215737641 -26926712 + Tigger3(Golem) DNA MER2_type 2 117 -2912 * 4011 123 70 17 chr1 215737623 215738308 -26926045 + Tigger3(Golem) DNA MER2_type 2278 3004 -25 2317 90 12 98 chr1 215738308 215738718 -26925635 - THE1C LTR MaLR 0 375 1 4011 123 70 17 chr1 215738718 215738746 -26925607 + Tigger3(Golem) DNA MER2_type 3004 3029 0 225 266 92 46 chr1 215738816 215738925 -26925428 - L1ME3A LINE L1 -94 6076 5963 742 291 146 43 chr1 215739017 215740057 -26924296 - L1ME3A LINE L1 -241 5929 4733 1796 168 7 3 chr1 215740057 215740342 -26924011 + AluSx SINE Alu 1 286 -26 742 291 146 43 chr1 215740342 215740557 -26923796 - L1ME3A LINE L1 -1437 4733 4541 248 278 74 61 chr1 215740621 215740851 -26923502 - L1ME3A LINE L1 -2580 3566 3334 265 285 63 31 chr1 215740899 215741218 -26923135 - L1ME3A LINE L1 -2898 3248 2920 641 215 8 0 chr1 215741267 215741476 -26922877 - FLAM_C SINE Alu 0 210 1 411 258 32 32 chr1 215741493 215741714 -26922639 - L1ME3A LINE L1 -3663 2483 2263 27 29 0 0 chr1 215741815 215741849 -26922504 + AT_rich Low_complexity Low_complexity 1 34 0 1331 256 142 27 chr1 215742004 215742519 -26921834 - L1ME3A LINE L1 -46 6124 5551 1563 291 189 38 chr1 215743130 215744325 -26920028 + L2 LINE L2 1876 3239 -74 9947 116 41 6 chr1 215744459 215746100 -26918253 + L1MA2 LINE L1 1977 3675 -3890 813 117 9 0 chr1 215746109 215746220 -26918133 + AluSp/q SINE Alu 179 290 -23 22 0 0 0 chr1 215746223 215746245 -26918108 + AT_rich Low_complexity Low_complexity 1 22 0 14941 172 20 5 chr1 215746252 215748455 -26915898 + L1MA2 LINE L1 3677 5966 -1757 279 0 0 0 chr1 215748455 215748486 -26915867 + (CA)n Simple_repeat Simple_repeat 2 32 0 14941 172 20 5 chr1 215748486 215750271 -26914082 + L1MA2 LINE L1 5966 7723 0 882 99 8 22 chr1 215750285 215750537 -26913816 + AluSx SINE Alu 1 302 -10 2951 159 7 38 chr1 215750890 215751438 -26912915 + LTR26B LTR ERV1 1 531 0 848 270 49 21 chr1 215751715 215752041 -26912312 - L1ME3A LINE L1 -9 6161 5827 254 299 62 21 chr1 215752637 215752734 -26911619 + MIR SINE MIR 41 141 -67 25 0 0 0 chr1 215753843 215753868 -26910485 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr1 215754568 215754593 -26909760 + AT_rich Low_complexity Low_complexity 1 25 0 1114 306 75 6 chr1 215754784 215755469 -26908884 - MER20B DNA MER1_type 0 783 3 28 71 0 0 chr1 215755637 215755693 -26908660 + AT_rich Low_complexity Low_complexity 1 56 0 219 264 0 23 chr1 215755780 215755867 -26908486 + (TA)n Simple_repeat Simple_repeat 1 85 0 228 270 173 43 chr1 215755920 215756059 -26908294 + L1MEd LINE L1 1129 1299 -4906 2792 135 49 4 chr1 215756059 215756512 -26907841 + MER101 LTR ERV1 2 474 0 228 270 173 43 chr1 215756512 215756557 -26907796 + L1MEd LINE L1 1299 1337 -4868 324 317 60 15 chr1 215756692 215756957 -26907396 + L1MEd LINE L1 1541 1817 -4579 227 284 11 11 chr1 215757235 215757330 -26907023 + A-rich Low_complexity Low_complexity 5 99 0 360 206 0 0 chr1 215757331 215757399 -26906954 + FLAM SINE Alu 60 127 -6 27 0 0 0 chr1 215757399 215757426 -26906927 + AT_rich Low_complexity Low_complexity 1 27 0 206 0 0 65 chr1 215757492 215757507 -26906846 + (CAAAAA)n Simple_repeat Simple_repeat 1 15 -14 635 261 0 0 chr1 215757507 215757637 -26906716 + FLAM_A SINE Alu 1 130 -3 206 0 0 65 chr1 215757637 215757652 -26906701 + (CAAAAA)n Simple_repeat Simple_repeat 15 29 0 1251 297 98 35 chr1 215757720 215759213 -26905140 + L1MEd LINE L1 2322 3945 -2270 2187 153 78 5 chr1 215759213 215759612 -26904741 - MSTA LTR MaLR 0 428 1 1251 297 98 35 chr1 215759612 215759894 -26904459 + L1MEd LINE L1 3945 4208 -2007 1309 197 91 0 chr1 215759895 215760149 -26904204 + AluJo SINE Alu 1 277 -35 695 297 83 51 chr1 215760171 215760916 -26903437 + L1MEd LINE L1 4195 4963 -1252 1947 222 40 53 chr1 215761097 215761696 -26902657 + MER97b DNA MER1_type? 26 616 -437 1984 103 30 0 chr1 215763853 215764124 -26900229 - AluSx SINE Alu -31 281 3 238 260 60 27 chr1 215764174 215764324 -26900029 - L1ME4a LINE L1 -23 6098 5944 407 247 60 0 chr1 215764352 215764518 -26899835 - L1ME4a LINE L1 -4 6117 5942 666 295 69 26 chr1 215764551 215765154 -26899199 - L1ME4a LINE L1 -71 6050 5403 362 300 20 47 chr1 215765324 215765474 -26898879 - L2 LINE L2 0 3313 3168 5495 141 85 57 chr1 215765781 215766215 -26898138 - Tigger1 DNA MER2_type 0 2418 1998 2506 65 3 3 chr1 215766215 215766524 -26897829 - AluY SINE Alu -2 309 1 5495 141 85 57 chr1 215766524 215767227 -26897126 - Tigger1 DNA MER2_type -420 1998 1249 1967 138 0 7 chr1 215767228 215767518 -26896835 + AluSx SINE Alu 1 288 -24 397 231 56 50 chr1 215767696 215767856 -26896497 + MER104 DNA Tc2 1 161 -19 389 331 99 0 chr1 215768195 215768367 -26895986 + LTR16A LTR ERVL 259 447 -3 1128 320 34 44 chr1 215768369 215769097 -26895256 + HERV16 LTR ERVL 1 721 -4275 485 353 92 17 chr1 215769326 215769686 -26894667 + HERV16 LTR ERVL 2243 2629 -2367 580 336 39 4 chr1 215769750 215769982 -26894371 + HERV16 LTR ERVL 2760 2999 -1997 427 309 70 44 chr1 215770153 215770451 -26893902 + HERV16 LTR ERVL 3332 3637 -2127 566 377 30 29 chr1 215770636 215771260 -26893093 + HERV16 LTR ERVL 3889 4513 -1251 445 324 59 43 chr1 215771548 215772110 -26892243 + HERV16 LTR ERVL 4558 4977 -19 269 306 92 3 chr1 215772415 215772553 -26891800 + LTR16A LTR ERVL 319 443 -7 501 309 119 40 chr1 215773360 215773969 -26890384 + L2 LINE L2 2652 3312 -1 362 269 210 11 chr1 215773980 215774166 -26890187 - MIR SINE MIR 0 262 40 621 254 148 5 chr1 215774694 215774911 -26889442 - MIR SINE MIR -4 258 11 189 329 36 51 chr1 215775394 215775531 -26888822 - L3 LINE CR1 -632 945 811 293 219 35 53 chr1 215775567 215775681 -26888672 - L1MC4 LINE L1 0 8042 7931 335 299 0 0 chr1 215775712 215775799 -26888554 + L1MC4 LINE L1 6614 6700 -1342 398 190 52 112 chr1 215775801 215775917 -26888436 - L1MC4 LINE L1 -128 7914 7806 3248 246 79 95 chr1 215775922 215776175 -26888178 - L1MC4a LINE L1 -102 7689 7433 3406 56 0 5 chr1 215776175 215776606 -26887747 - L1PA7 LINE L1 -2 6152 5724 3248 246 79 95 chr1 215776606 215776754 -26887599 - L1MC4a LINE L1 -358 7433 7284 3388 56 18 27 chr1 215776754 215777202 -26887151 - MLT2A1 LTR ERVL 0 444 1 3248 246 79 95 chr1 215777202 215779019 -26885334 - L1MC4a LINE L1 -507 7284 5506 542 294 158 35 chr1 215779026 215779537 -26884816 - L1MC4a LINE L1 -758 5371 4798 300 106 21 0 chr1 215779547 215779594 -26884759 - THE1A LTR MaLR 0 355 308 3871 119 7 13 chr1 215779595 215780214 -26884139 - THE1-int LTR MaLR -590 990 376 232 320 0 0 chr1 215780336 215780436 -26883917 + C-rich Low_complexity Low_complexity 1 100 0 243 255 57 28 chr1 215780626 215780732 -26883621 - THE1C LTR MaLR -266 109 1 333 327 87 20 chr1 215780879 215781432 -26882921 - L1MC4a LINE L1 -1506 4623 4034 233 238 16 0 chr1 215782011 215782074 -26882279 - L1MC4a LINE L1 -4622 1507 1444 261 253 0 11 chr1 215782218 215782305 -26882048 - L1MC4a LINE L1 -4862 1257 1172 239 270 20 20 chr1 215782450 215782550 -26881803 - L1M4 LINE L1 -1354 4792 4693 * 721 232 68 83 chr1 215782538 215783021 -26881332 - L1MC4a LINE L1 -5046 1073 598 264 329 102 44 chr1 215783547 215784037 -26880316 + L2 LINE L2 2566 3083 -189 420 250 38 0 chr1 215784228 215784360 -26879993 - L1MA10 LINE L1 -8 6326 6190 * 1302 233 94 4 chr1 215784358 215784874 -26879479 - L1ME LINE L1 -422 5813 5257 659 109 27 0 chr1 215784916 215785026 -26879327 + L1PA13 LINE L1 6051 6163 0 439 204 199 31 chr1 215785498 215785694 -26878659 - MER46C DNA MER2_type -109 229 1 251 259 152 18 chr1 215785959 215786071 -26878282 - MIR SINE MIR -33 229 103 2944 215 90 62 chr1 215786172 215787145 -26877208 - L1ME LINE L1 -955 5260 4242 1035 132 0 21 chr1 215787145 215787334 -26877019 - L1MA3 LINE L1 0 6305 6121 2944 215 90 62 chr1 215787334 215787641 -26876712 - L1ME LINE L1 -1973 4242 3945 1100 241 49 97 chr1 215787639 215787900 -26876453 - L1ME LINE L1 -3264 2951 2679 * 2438 53 0 23 chr1 215787900 215788202 -26876151 + AluY SINE Alu 1 295 -16 1100 241 49 97 chr1 215788202 215788537 -26875816 - L1ME LINE L1 -3536 2679 2384 990 182 0 0 chr1 215788543 215788702 -26875651 - AluSg/x SINE Alu -17 293 135 445 236 47 24 chr1 215788712 215788966 -26875387 - L1ME LINE L1 -4009 2387 2128 * 454 136 0 136 chr1 215788955 215789087 -26875266 - L1MB3 LINE L1 -2 6181 6068 1464 257 58 23 chr1 215789108 215789801 -26874552 - L1ME LINE L1 -4251 2145 1429 1019 231 78 11 chr1 215789924 215790296 -26874057 - L1ME LINE L1 -5130 1266 870 2205 95 3 44 chr1 215790299 215790614 -26873739 - AluSg SINE Alu -8 302 1 1044 320 35 4 chr1 215790619 215791072 -26873281 - L1ME LINE L1 -5753 643 177 991 222 132 49 chr1 215791085 215791455 -26872898 + MER57A LTR ERV1 3 403 0 368 234 44 15 chr1 215791465 215791602 -26872751 - L1ME LINE L1 -6234 162 22 1770 164 21 12 chr1 215791926 215792261 -26872092 - MER1B DNA MER1_type -1 338 1 697 281 70 5 chr1 215793051 215793236 -26871117 - MIR SINE MIR -46 216 20 394 322 74 8 chr1 215793468 215793589 -26870764 + L2 LINE L2 3183 3311 -2 25 31 0 0 chr1 215794645 215794677 -26869676 + AT_rich Low_complexity Low_complexity 1 32 0 1922 158 20 0 chr1 215795365 215795657 -26868696 - AluSg SINE Alu -12 298 1 1305 210 88 31 chr1 215795836 215796255 -26868098 - L1MB8 LINE L1 -6 6172 5730 241 356 20 0 chr1 215796715 215796816 -26867537 + MIR SINE MIR 42 144 -64 363 293 49 16 chr1 215797610 215797739 -26866614 - MIR SINE MIR -67 141 13 249 346 37 9 chr1 215797850 215797975 -26866378 - MIR3 SINE MIR -45 163 41 291 336 56 0 chr1 215798831 215798956 -26865397 + L2 LINE L2 3141 3272 0 600 280 92 25 chr1 215799986 215800225 -26864128 + MIR SINE MIR 7 261 -1 328 271 30 30 chr1 215800979 215801112 -26863241 + L1ME4a LINE L1 5964 6096 -25 182 239 0 15 chr1 215801271 215801338 -26863015 + CT-rich Low_complexity Low_complexity 1 66 0 213 229 21 0 chr1 215801542 215801590 -26862763 + (TATG)n Simple_repeat Simple_repeat 4 52 0 323 171 0 26 chr1 215802358 215802434 -26861919 + L1PA16 LINE L1 6084 6157 -9 199 143 48 111 chr1 215802654 215802717 -26861636 - L2 LINE L2 -1 3271 3213 2248 98 10 0 chr1 215803105 215803440 -26860913 - AluSc SINE Alu 0 338 1 492 268 96 66 chr1 215804858 215805160 -26859193 + MER93a LTR ERV1 65 375 -27 289 226 83 48 chr1 215805265 215805349 -26859004 - MIR SINE MIR -84 178 92 370 167 56 44 chr1 215805690 215805780 -26858573 + MLT1I LTR MaLR 319 409 0 607 385 37 21 chr1 215806286 215806717 -26857636 - L3 LINE CR1 -113 1464 1027 702 345 145 11 chr1 215806773 215807248 -26857105 - L3 LINE CR1 -819 758 220 24 53 0 0 chr1 215807436 215807474 -26856879 + AT_rich Low_complexity Low_complexity 1 38 0 290 188 104 111 chr1 215808177 215808321 -26856032 + LTR16B LTR ERVL 4 146 -318 384 274 145 11 chr1 215810636 215810797 -26853556 + MER5A DNA MER1_type 4 189 0 366 318 170 9 chr1 215811097 215811320 -26853033 - MIR SINE MIR -2 260 2 273 328 49 71 chr1 215813059 215813242 -26851111 + MIR3 SINE MIR 30 208 0 26 0 0 0 chr1 215813513 215813539 -26850814 + AT_rich Low_complexity Low_complexity 1 26 0 316 183 77 39 chr1 215814214 215814318 -26850035 - MLT1H LTR MaLR -16 533 426 317 237 11 54 chr1 215814517 215814610 -26849743 - MLT1F1 LTR MaLR -381 168 80 2137 104 3 3 chr1 215815235 215815522 -26848831 - AluSc SINE Alu -11 298 12 894 193 81 0 chr1 215815624 215815821 -26848532 - MER20 DNA MER1_type -4 215 3 3260 68 30 2 chr1 215815823 215816264 -26848089 - L1PA13 LINE L1 -15 6148 5696 25 0 0 0 chr1 215816317 215816342 -26848011 + AT_rich Low_complexity Low_complexity 1 25 0 590 267 64 0 chr1 215816459 215816631 -26847722 - MIR SINE MIR -23 239 57 6160 67 6 3 chr1 215817107 215817884 -26846469 + LTR17 LTR ERV1 1 780 0 242 310 10 0 chr1 215819458 215819558 -26844795 + MLT1H LTR MaLR 51 151 -398 533 339 34 21 chr1 215819780 215820016 -26844337 + MIR SINE MIR 18 256 -6 2224 202 69 4 chr1 215820180 215820715 -26843638 - L1MD3 LINE L1 -9 7986 7417 393 192 0 0 chr1 215820748 215820821 -26843532 - MLT1F1 LTR MaLR -444 123 51 2264 125 0 0 chr1 215821060 215821364 -26842989 + AluSx SINE Alu 1 304 -8 954 224 42 26 chr1 215821421 215821805 -26842548 - L1M4 LINE L1 -798 5348 4959 445 225 112 36 chr1 215821866 215822494 -26841859 + L1ME1 LINE L1 5431 6110 -56 2265 68 4 0 chr1 215822494 215822803 -26841550 - AluY SINE Alu 0 310 1 445 225 112 36 chr1 215822803 215822859 -26841494 + L1ME1 LINE L1 6110 6160 -6 210 37 0 0 chr1 215823070 215823097 -26841256 + (TATG)n Simple_repeat Simple_repeat 2 28 0 643 88 0 0 chr1 215823335 215823426 -26840927 + MSTB LTR MaLR 1 91 -335 1666 143 10 71 chr1 215823430 215823724 -26840629 - AluSx SINE Alu -36 276 1 522 325 6 12 chr1 215824104 215824264 -26840089 + MER5B DNA MER1_type 18 176 -2 25 0 0 0 chr1 215824390 215824415 -26839938 + AT_rich Low_complexity Low_complexity 1 25 0 834 142 0 27 chr1 215824776 215824924 -26839429 + MSTB LTR MaLR 1 144 -282 228 292 62 0 chr1 215826073 215826138 -26838215 + L2 LINE L2 3240 3308 -5 235 165 63 51 chr1 215826309 215826388 -26837965 + MLT1H LTR MaLR 460 539 -16 26 0 0 0 chr1 215826753 215826779 -26837574 + AT_rich Low_complexity Low_complexity 1 26 0 225 257 0 57 chr1 215827360 215827430 -26836923 - L2 LINE L2 0 3272 3207 32 26 0 0 chr1 215828261 215828300 -26836053 + AT_rich Low_complexity Low_complexity 1 39 0 2026 127 3 7 chr1 215828383 215828682 -26835671 + AluSc SINE Alu 1 298 -11 263 245 11 64 chr1 215829308 215829402 -26834951 + MLT1H LTR MaLR 80 168 -381 289 167 24 0 chr1 215829634 215829707 -26834646 + MLT1H LTR MaLR 479 533 -16 962 197 56 0 chr1 215830439 215830652 -26833701 - L1MB3 LINE L1 0 6183 5959 1828 153 0 7 chr1 215830800 215831087 -26833266 - AluSx SINE Alu -5 307 23 294 338 103 24 chr1 215833325 215833518 -26830835 + MIR SINE MIR 6 205 -57 1295 204 107 0 chr1 215834501 215834781 -26829572 - AluJb SINE Alu -2 310 1 294 315 135 17 chr1 215834991 215835169 -26829184 + MIR SINE MIR 8 206 -56 1427 62 0 0 chr1 215835170 215835348 -26829005 - AluY SINE Alu -3 308 131 1225 204 5 119 chr1 215835857 215836269 -26828084 - MLT1A1 LTR MaLR 0 365 1 216 300 0 17 chr1 215836759 215836819 -26827534 + MER91 DNA MER1_type 6 64 -76 259 321 67 37 chr1 215837241 215837375 -26826978 - MIR SINE MIR -78 184 47 192 40 0 0 chr1 215838259 215838284 -26826069 + (TC)n Simple_repeat Simple_repeat 1 25 0 473 299 27 5 chr1 215838439 215838626 -26825727 + MER46C DNA MER2_type 138 328 -10 216 290 130 30 chr1 215838658 215838758 -26825595 + L2 LINE L2 3163 3272 0 201 282 59 12 chr1 215838922 215839007 -26825346 - L2 LINE L2 -4 3309 3221 276 30 0 0 chr1 215839951 215839984 -26824369 + (TG)n Simple_repeat Simple_repeat 2 34 0 3705 189 19 19 chr1 215840410 215841151 -26823202 + MER21B LTR ERV1 8 748 -115 329 352 6 19 chr1 215842027 215842186 -26822167 + MIR SINE MIR 5 161 -101 663 264 185 0 chr1 215842815 215843031 -26821322 + MIR SINE MIR 6 261 -1 195 42 0 0 chr1 215844458 215844482 -26819871 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 715 335 86 33 chr1 215844508 215844811 -26819542 - L2 LINE L2 -1192 2122 1837 1746 157 8 8 chr1 215844811 215845145 -26819208 + AluSx SINE Alu 17 350 0 715 335 86 33 chr1 215845145 215845442 -26818911 - L2 LINE L2 -1477 1837 1489 2097 98 0 20 chr1 215845623 215845953 -26818400 + AluSc SINE Alu 1 309 0 252 196 18 0 chr1 215846155 215846211 -26818142 - LTR33 LTR ERVL -366 155 99 1334 249 114 42 chr1 215846720 215847194 -26817159 + MLT1F LTR MaLR 32 539 -3 276 352 83 21 chr1 215847591 215847736 -26816617 - MER5A DNA MER1_type -27 162 9 196 287 125 66 chr1 215847754 215847890 -26816463 + L2 LINE L2 3109 3252 -20 226 296 34 80 chr1 215848175 215848218 -26816135 + MIR3 SINE MIR 20 63 -145 2203 117 3 10 chr1 215848218 215848526 -26815827 - AluSc SINE Alu -3 306 1 226 296 34 80 chr1 215848526 215848541 -26815812 + MIR3 SINE MIR 63 77 -131 1068 62 0 19 chr1 215848541 215848702 -26815651 + (TTTC)n Simple_repeat Simple_repeat 2 159 0 226 296 34 80 chr1 215848702 215848818 -26815535 + MIR3 SINE MIR 77 187 -21 978 231 5 0 chr1 215849290 215849498 -26814855 - MER3 DNA MER1_type 0 209 1 26 30 0 0 chr1 215850319 215850352 -26814001 + AT_rich Low_complexity Low_complexity 1 33 0 2137 100 7 0 chr1 215851127 215851568 -26812785 - AluSp SINE Alu 0 443 1 1450 266 35 35 chr1 215851793 215852286 -26812067 + LTR40a LTR ERVL 1 493 -26 545 268 119 26 chr1 215852452 215852646 -26811707 + MER58C DNA MER1_type 4 215 0 2729 120 31 7 chr1 215852817 215853023 -26811330 + MSTA LTR MaLR 1 201 -227 180 0 0 0 chr1 215853023 215853043 -26811310 + (TC)n Simple_repeat Simple_repeat 1 20 0 2729 120 31 7 chr1 215853043 215853254 -26811099 + MSTA LTR MaLR 201 428 0 228 292 62 0 chr1 215854232 215854297 -26810056 + L2 LINE L2 3240 3308 -5 235 165 63 51 chr1 215854468 215854547 -26809806 + MLT1H1 LTR MaLR 460 539 -16 278 233 82 0 chr1 215854689 215854762 -26809591 - MIR SINE MIR -143 119 41 751 122 15 0 chr1 215854944 215855075 -26809278 + GA-rich Low_complexity Low_complexity 4 136 0 225 257 0 57 chr1 215855780 215855850 -26808503 + L2 LINE L2 3207 3272 0 224 183 37 24 chr1 215856420 215856502 -26807851 + (TAA)n Simple_repeat Simple_repeat 2 84 0 252 152 63 51 chr1 215856822 215856901 -26807452 - MLT1H1 LTR MaLR -16 539 460 207 0 0 0 chr1 215857061 215857084 -26807269 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 397 256 45 50 chr1 215857088 215857287 -26807066 - MLT1H LTR MaLR -315 234 37 1430 154 34 82 chr1 215857445 215857768 -26806585 - AluJb SINE Alu 0 311 3 1460 213 36 67 chr1 215858365 215858843 -26805510 - MLT1C LTR MaLR 0 467 5 792 278 53 50 chr1 215858959 215859011 -26805342 + L2 LINE L2 2970 3020 -293 1705 149 3 47 chr1 215859011 215859335 -26805018 + AluJb SINE Alu 1 311 0 792 278 53 50 chr1 215859335 215859623 -26804730 + L2 LINE L2 3020 3312 -1 32 26 0 0 chr1 215861453 215861492 -26802861 + AT_rich Low_complexity Low_complexity 1 39 0 2378 101 0 0 chr1 215861575 215861883 -26802470 + AluSg SINE Alu 1 308 -2 24 0 0 0 chr1 215862845 215862869 -26801484 + AT_rich Low_complexity Low_complexity 1 24 0 526 360 96 25 chr1 215863290 215863851 -26800502 - L2 LINE L2 -452 2862 2262 567 281 103 21 chr1 215864791 215865033 -26799320 + MIR SINE MIR 1 262 0 11487 190 45 10 chr1 215865515 215872231 -26792122 - L1P4 LINE L1 -504 6365 1 500 296 90 26 chr1 215872389 215872769 -26791584 - L1ME LINE L1 -555 5607 5211 2271 200 49 61 chr1 215872903 215873419 -26790934 + MLT2B3 LTR ERVL 1 511 -43 342 0 0 0 chr1 215873419 215873457 -26790896 + (CA)n Simple_repeat Simple_repeat 2 39 0 2271 200 49 61 chr1 215873457 215873495 -26790858 + MLT2B3 LTR ERVL 511 548 -6 202 139 28 0 chr1 215873496 215873532 -26790821 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2440 72 7 0 chr1 215873784 215874089 -26790264 - AluSp SINE Alu -6 307 1 358 321 54 14 chr1 215874589 215874869 -26789484 - L1ME LINE L1 -1331 4815 4525 1240 184 33 2 chr1 215874881 215875176 -26789177 - MER2 DNA MER2_type 0 345 1 1556 313 95 39 chr1 215875176 215875595 -26788758 - L1ME LINE L1 -1628 4518 4124 2017 127 27 0 chr1 215875595 215875887 -26788466 + AluSx SINE Alu 1 300 -12 1556 313 95 39 chr1 215875887 215876916 -26787437 - L1ME LINE L1 -2022 4124 2989 2206 217 44 12 chr1 215877049 215877785 -26786568 - Charlie1 DNA MER1_type -385 2376 1568 4006 170 28 3 chr1 215877787 215878537 -26785816 - L1MB8 LINE L1 -104 6074 5307 313 182 15 0 chr1 215878579 215878645 -26785708 - L1MA4 LINE L1 -73 6227 6161 523 256 8 0 chr1 215878748 215878869 -26785484 + LTR16C LTR ERVL 361 482 -9 210 364 13 0 chr1 215878924 215879001 -26785352 - MIR3 SINE MIR -48 160 83 569 100 0 0 chr1 215879614 215879694 -26784659 + MADE1 DNA Mariner 1 80 0 33 0 0 0 chr1 215880787 215880820 -26783533 + AT_rich Low_complexity Low_complexity 1 33 0 250 333 99 0 chr1 215880871 215880982 -26783371 - L2 LINE L2 -1 3271 3150 276 243 29 0 chr1 215881146 215881216 -26783137 + LTR33 LTR ERVL 354 425 -96 40 0 0 0 chr1 215881218 215881258 -26783095 + AT_rich Low_complexity Low_complexity 1 40 0 1106 261 91 25 chr1 215881281 215881687 -26782666 + MLT1C LTR MaLR 35 467 0 409 211 81 133 chr1 215881853 215882237 -26782116 + HAL1 LINE L1 699 1062 -1445 * 2791 218 29 27 chr1 215882236 215882934 -26781419 + L1MC3 LINE L1 6384 7082 -703 374 273 58 36 chr1 215883469 215883608 -26780745 + MIR SINE MIR 43 184 -78 28 29 0 0 chr1 215883660 215883695 -26780658 + AT_rich Low_complexity Low_complexity 1 35 0 349 333 65 12 chr1 215883715 215883883 -26780470 - L3 LINE CR1 -12 1565 1389 453 19 0 0 chr1 215883921 215883975 -26780378 + (TA)n Simple_repeat Simple_repeat 1 54 0 378 285 56 21 chr1 215884547 215884691 -26779662 - MIR SINE MIR -48 214 66 2072 120 11 0 chr1 215885165 215885469 -26778884 + AluSp SINE Alu 1 307 0 527 274 153 40 chr1 215885505 215885779 -26778574 + L2 LINE L2 3009 3313 0 242 286 88 0 chr1 215885889 215885980 -26778373 + MIR SINE MIR 163 261 -1 338 297 64 20 chr1 215886324 215886526 -26777827 - L1M4 LINE L1 -3057 3089 2879 1815 151 0 11 chr1 215886546 215886831 -26777522 + AluJb SINE Alu 1 282 -30 28 0 0 0 chr1 215887190 215887218 -26777135 + AT_rich Low_complexity Low_complexity 1 28 0 352 223 32 85 chr1 215887368 215887556 -26776797 + MER104 DNA MER2_type 1 178 -2 182 350 25 12 chr1 215887675 215887755 -26776598 + MIR SINE MIR 161 241 -21 271 292 62 21 chr1 215888700 215888796 -26775557 - L2 LINE L2 -62 3210 3111 207 0 0 0 chr1 215888822 215888845 -26775508 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1804 134 0 72 chr1 215889320 215889661 -26774692 - AluSx SINE Alu 0 321 3 2489 166 108 37 chr1 215889694 215890063 -26774290 + MLT2B3 LTR ERVL 1 419 -135 2283 123 12 6 chr1 215890063 215890404 -26773949 + MER61A LTR ERV1 1 343 0 2489 166 108 37 chr1 215890404 215890551 -26773802 + MLT2B3 LTR ERVL 419 554 0 275 310 23 0 chr1 215890796 215890883 -26773470 - L2 LINE L2 -5 3308 3220 187 339 16 16 chr1 215891037 215891164 -26773189 - L2 LINE L2 -389 2925 2799 502 199 47 41 chr1 215891216 215891387 -26772966 - LTR37A LTR ERV1 0 426 297 314 348 77 0 chr1 215891846 215892001 -26772352 - MIR SINE MIR -50 212 46 378 0 0 0 chr1 215894118 215894160 -26770193 + (TG)n Simple_repeat Simple_repeat 1 42 0 9045 141 43 10 chr1 215894858 215895464 -26768889 + L1PBa LINE L1 1470 2054 -4808 210 37 0 0 chr1 215895464 215895491 -26768862 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 9045 141 43 10 chr1 215895491 215896635 -26767718 + L1PBa LINE L1 2054 3334 -3528 2432 95 0 0 chr1 215896635 215896940 -26767413 + AluSg SINE Alu 6 310 0 9045 141 43 10 chr1 215896940 215897770 -26766583 + L1PBa LINE L1 3334 4135 -2727 1170 288 140 23 chr1 215897927 215898672 -26765681 - L2 LINE L2 -121 3192 2378 251 53 0 26 chr1 215899443 215899481 -26764872 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1448 208 28 109 chr1 215899491 215899765 -26764588 - L1M4 LINE L1 -1207 4939 4727 684 199 0 22 chr1 215899765 215899901 -26764452 + FLAM_C SINE Alu 1 133 0 1448 208 28 109 chr1 215899901 215900159 -26764194 - L1M4 LINE L1 -1419 4727 4450 294 282 28 0 chr1 215900162 215900233 -26764120 - MER2 DNA MER2_type -3 342 270 1279 128 25 10 chr1 215900267 215900470 -26763883 - MER2 DNA MER2_type -139 206 1 578 246 58 38 chr1 215900493 215900586 -26763767 - L1M4 LINE L1 -2500 3646 3556 1302 236 56 0 chr1 215900586 215900908 -26763445 - MER58B DNA MER1_type 0 341 2 578 246 58 38 chr1 215900908 215901054 -26763299 - L1M4 LINE L1 -2590 3556 3402 22 0 0 0 chr1 215901102 215901124 -26763229 + AT_rich Low_complexity Low_complexity 1 22 0 1922 136 0 0 chr1 215901219 215901544 -26762809 - AluSx SINE Alu 0 327 3 295 331 117 26 chr1 215901594 215901748 -26762605 + MIR3 SINE MIR 20 187 -21 200 310 0 0 chr1 215901954 215902012 -26762341 + MIR3 SINE MIR 105 162 -46 278 80 0 100 chr1 215902355 215902405 -26761948 - Alu SINE Alu -12 296 252 263 256 134 63 chr1 215902716 215902770 -26761583 - L1ME4a LINE L1 -82 6039 5990 2150 107 10 0 chr1 215902770 215903061 -26761292 + AluSc SINE Alu 1 294 -15 263 256 134 63 chr1 215903061 215903229 -26761124 - L1ME4a LINE L1 -131 5990 5801 218 380 53 35 chr1 215903811 215903982 -26760371 + L2 LINE L2 2715 2888 -426 185 256 49 73 chr1 215904012 215904094 -26760259 - MIR SINE MIR -58 204 125 2264 173 107 4 chr1 215904160 215904657 -26759696 - L1MB3 LINE L1 -2 6181 5634 226 227 0 0 chr1 215904822 215904866 -26759487 + L2 LINE L2 3252 3295 -18 22 0 0 0 chr1 215906279 215906301 -26758052 + AT_rich Low_complexity Low_complexity 1 22 0 1929 235 113 59 chr1 215906717 215907341 -26757012 - L1ME1 LINE L1 -26 6140 5470 2078 88 14 30 chr1 215907341 215907637 -26756716 - AluSx SINE Alu -18 294 4 1929 235 113 59 chr1 215907637 215907740 -26756613 - L1ME1 LINE L1 -696 5470 5374 1605 178 37 0 chr1 215907744 215908014 -26756339 + Tigger7 DNA MER2_type 1 280 -453 858 119 54 0 chr1 215908004 215908222 -26756131 + Tigger7 DNA MER2_type 2270 2483 -8 * 1239 197 45 6 chr1 215908241 215908571 -26755782 - L1ME1 LINE L1 -782 5364 5022 693 287 39 18 chr1 215908728 215909059 -26755294 + MER46C DNA MER2_type 1 338 0 1626 283 99 29 chr1 215911258 215911959 -26752394 - L2 LINE L2 -946 2368 1536 667 291 8 46 chr1 215913332 215913573 -26750780 - MIR SINE MIR -6 256 25 208 167 19 37 chr1 215913692 215913746 -26750607 + A-rich Low_complexity Low_complexity 2 54 0 3079 217 36 11 chr1 215914253 215914996 -26749357 + L1ME1 LINE L1 5372 6133 -33 383 60 0 0 chr1 215915012 215915062 -26749291 + MADE1 DNA Mariner 2 51 -29 360 111 0 0 chr1 215918355 215918409 -26745944 + (CA)n Simple_repeat Simple_repeat 2 55 0 2368 70 0 52 chr1 215920081 215920409 -26743944 + AluY SINE Alu 1 311 0 691 40 10 10 chr1 215921524 215921624 -26742729 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 4588 167 40 37 chr1 215921863 215922130 -26742223 + L1MA4 LINE L1 4775 5040 -1260 2157 102 10 10 chr1 215922130 215922433 -26741920 + AluSx SINE Alu 1 303 -9 4588 167 40 37 chr1 215922433 215922445 -26741908 + L1MA4 LINE L1 5040 5050 -1250 1559 138 12 4 chr1 215922445 215922691 -26741662 + AluSq SINE Alu 30 277 -36 4588 167 40 37 chr1 215922691 215923820 -26740533 + L1MA4 LINE L1 5050 6178 -122 1747 158 39 3 chr1 215923920 215924255 -26740098 + THE1B LTR MaLR 18 364 0 294 312 0 13 chr1 215924313 215924390 -26739963 - L2 LINE L2 -556 2758 2683 1866 162 36 0 chr1 215924392 215924780 -26739573 + Tigger2 DNA MER2_type 1 402 -2316 2114 115 6 3 chr1 215924788 215925118 -26739235 + Tigger2 DNA MER2_type 2309 2639 -79 1170 179 0 10 chr1 215925119 215925315 -26739038 - AluJb SINE Alu -103 209 16 546 172 0 0 chr1 215925317 215925404 -26738949 + Tigger2 DNA MER2_type 2621 2707 -11 402 174 47 58 chr1 215925450 215925536 -26738817 + L2 LINE L2 3186 3270 -2 2147 128 24 21 chr1 215925552 215925926 -26738427 + THE1C LTR MaLR 1 375 0 933 247 95 8 chr1 215926062 215926325 -26738028 + MLT1J1 LTR MaLR 7 292 -154 285 299 26 0 chr1 215926485 215926562 -26737791 - MER20B DNA MER1_type -607 176 98 496 312 49 17 chr1 215926676 215926926 -26737427 + MIR SINE MIR 7 261 -1 1735 171 6 44 chr1 215927094 215927409 -26736944 + AluJb SINE Alu 1 303 -9 182 255 59 20 chr1 215928081 215928132 -26736221 + L2 LINE L2 3250 3302 -11 208 272 49 37 chr1 215929599 215929680 -26734673 - L2 LINE L2 -1 3312 3231 2019 92 0 0 chr1 215929689 215929940 -26734413 + AluSg SINE Alu 40 290 -20 730 299 24 5 chr1 215930303 215930510 -26733843 - MIR SINE MIR -24 238 28 274 333 57 25 chr1 215930652 215930811 -26733542 + L3 LINE CR1 1263 1426 -151 423 0 0 0 chr1 215930816 215930863 -26733490 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 470 228 18 26 chr1 215930873 215930987 -26733366 - MLT2C1 LTR ERVL -62 335 223 1932 82 7 43 chr1 215931170 215931451 -26732902 - AluSq SINE Alu -1 312 42 22 35 0 0 chr1 215932103 215932132 -26732221 + AT_rich Low_complexity Low_complexity 1 29 0 239 245 0 0 chr1 215933075 215933128 -26731225 + MER74B LTR ERVL 1 53 -569 1087 264 78 10 chr1 215933205 215933588 -26730765 + MER74B LTR ERVL 204 612 -10 1402 123 64 0 chr1 215934355 215934591 -26729762 - L1PA13 LINE L1 -3 6160 5910 425 173 164 10 chr1 215934832 215934936 -26729417 + MIR SINE MIR 35 154 -108 2340 167 16 23 chr1 215934992 215935429 -26728924 - Tigger2a DNA MER2_type 0 434 1 313 276 88 59 chr1 215935552 215935722 -26728631 + MIR SINE MIR 53 227 -35 * 555 229 34 39 chr1 215935714 215935893 -26728460 + MIR SINE MIR 82 259 -3 2276 183 26 2 chr1 215936572 215936987 -26727366 + MSTB LTR MaLR 1 425 -1 180 319 8 76 chr1 215937145 215937264 -26727089 + L2 LINE L2 2596 2706 -608 245 317 77 59 chr1 215937345 215937566 -26726787 + L2 LINE L2 2867 3091 -181 21 57 0 0 chr1 215937592 215937627 -26726726 + AT_rich Low_complexity Low_complexity 1 35 0 535 237 46 36 chr1 215937634 215937828 -26726525 - L2 LINE L2 -5 3308 3113 1128 214 267 5 chr1 215937881 215938293 -26726060 + MLT2B1 LTR ERVL 1 520 0 206 347 65 8 chr1 215938416 215938540 -26725813 - L2 LINE L2 -417 2897 2767 22 35 0 0 chr1 215939547 215939576 -26724777 + AT_rich Low_complexity Low_complexity 1 29 0 259 262 186 0 chr1 215939737 215939882 -26724471 - MLT1H LTR MaLR -100 449 278 288 378 23 12 chr1 215940226 215940398 -26723955 - MIR SINE MIR -75 187 14 245 403 0 0 chr1 215940414 215940533 -26723820 - L3 LINE CR1 -227 1350 1232 568 364 103 13 chr1 215940841 215941316 -26723037 + L3 LINE CR1 1048 1565 -12 321 292 62 50 chr1 215941396 215941557 -26722796 - MIR SINE MIR -54 208 46 2575 42 6 16 chr1 215942188 215942500 -26721853 - AluY SINE Alu -1 310 2 26 30 0 0 chr1 215943036 215943069 -26721284 + AT_rich Low_complexity Low_complexity 1 33 0 181 358 28 28 chr1 215943996 215944105 -26720248 - L2 LINE L2 -424 2890 2782 368 274 107 6 chr1 215944178 215944346 -26720007 - MLT1K LTR MaLR -2 586 402 1226 271 56 106 chr1 215944415 215945553 -26718800 + L1M3d LINE L1 1 1081 -4810 3319 153 29 29 chr1 215945565 215946427 -26717926 + MER49 LTR ERV1 1 923 0 625 166 51 25 chr1 215946429 215946586 -26717767 + L1M3d LINE L1 1094 1254 -4637 254 49 0 24 chr1 215946766 215946807 -26717546 + (TA)n Simple_repeat Simple_repeat 2 41 0 3791 257 40 16 chr1 215946823 215948705 -26715648 + L1M4 LINE L1 1517 3353 -3291 2209 81 20 10 chr1 215948705 215949001 -26715352 + AluY SINE Alu 1 299 -12 3791 257 40 16 chr1 215949001 215949359 -26714994 + L1M4 LINE L1 3353 3701 -2943 2467 117 28 19 chr1 215949359 215949718 -26714635 + THE1B LTR MaLR 1 362 -2 11388 97 13 3 chr1 215949720 215951284 -26713069 + THE1B-int LTR MaLR 1 1580 0 2359 114 39 25 chr1 215951284 215951643 -26712710 + THE1B LTR MaLR 1 364 0 3791 257 40 16 chr1 215951643 215951747 -26712606 + L1M4 LINE L1 3700 4022 -2622 444 278 5 16 chr1 215951751 215951945 -26712408 - L1M4 LINE L1 -1462 4684 4493 575 274 154 38 chr1 215952217 215953320 -26711033 - L1M4 LINE L1 -2013 4133 2903 3113 193 59 24 chr1 215953367 215954201 -26710152 - L1MC3 LINE L1 -1 7784 6922 2442 75 0 0 chr1 215954226 215954521 -26709832 - AluY SINE Alu -16 295 1 629 321 62 53 chr1 215954529 215954780 -26709573 - L1M4 LINE L1 -3289 2857 2610 580 131 28 0 chr1 215954780 215954887 -26709466 - L1MA3 LINE L1 -3 6302 6193 629 321 62 53 chr1 215954887 215955107 -26709246 - L1M4 LINE L1 -3536 2610 2393 2164 102 4 0 chr1 215955107 215955382 -26708971 - AluSg SINE Alu -19 291 16 629 321 62 53 chr1 215955382 215955620 -26708733 - L1M4 LINE L1 -3753 2393 2141 24 53 0 0 chr1 215955923 215955961 -26708392 + AT_rich Low_complexity Low_complexity 1 38 0 429 309 26 30 chr1 215958341 215958610 -26705743 - L1MC/D LINE L1 -579 5583 5316 254 143 43 43 chr1 215958729 215958799 -26705554 + (TTTAA)n Simple_repeat Simple_repeat 1 70 0 2208 130 13 0 chr1 215958828 215959135 -26705218 - AluSx SINE Alu -1 311 1 264 255 38 25 chr1 215959202 215959359 -26704994 + L1MC5 LINE L1 5623 5781 -2027 1557 233 0 16 chr1 215959542 215959851 -26704502 - AluJo SINE Alu -8 304 1 581 181 138 100 chr1 215960313 215960523 -26703830 - MER20 DNA MER1_type 0 219 2 714 327 99 55 chr1 215961475 215962257 -26702096 - L2 LINE L2 0 3272 2461 352 266 11 11 chr1 215962323 215962417 -26701936 - MIR SINE MIR -140 122 29 1253 117 0 0 chr1 215962479 215962642 -26701711 - AluSp SINE Alu -16 297 135 360 0 0 0 chr1 215963215 215963255 -26701098 + (CA)n Simple_repeat Simple_repeat 2 41 0 731 228 90 67 chr1 215963291 215963725 -26700628 + L1MC5 LINE L1 7087 7530 -431 2106 83 0 0 chr1 215963961 215964249 -26700104 + L1PA10 LINE L1 5578 5865 -303 235 231 19 0 chr1 215966087 215966139 -26698214 + CT-rich Low_complexity Low_complexity 3 55 0 2322 101 3 0 chr1 215966513 215966810 -26697543 - AluSp SINE Alu -15 298 1 629 262 99 9 chr1 215966865 215967098 -26697255 + MER46C DNA MER2_type 85 338 0 193 311 176 0 chr1 215967679 215967753 -26696600 - MIR SINE MIR -168 94 8 1909 251 39 52 chr1 215969684 215970378 -26693975 + L1MEc LINE L1 36 720 -5676 1001 214 56 44 chr1 215970380 215970452 -26693901 + L1MEc LINE L1 2811 2881 -3334 2209 99 3 0 chr1 215970452 215970744 -26693609 + AluSx SINE Alu 1 293 -19 1001 214 56 44 chr1 215970744 215971083 -26693270 + L1MEc LINE L1 2881 3227 -2988 431 313 121 0 chr1 215971836 215972002 -26692351 - MIR SINE MIR -73 189 4 1594 145 32 69 chr1 215972140 215972645 -26691708 - L1M3 LINE L1 -573 5607 5127 20097 157 21 21 chr1 215972660 215980359 -26683994 - L1MA1 LINE L1 -6 7715 15 341 109 16 0 chr1 215980606 215980670 -26683683 + (TC)n Simple_repeat Simple_repeat 1 65 0 327 212 202 0 chr1 215981038 215981137 -26683216 - MLT1G LTR MaLR -49 541 423 241 187 107 13 chr1 215981206 215981281 -26683072 - MLT1G LTR MaLR -275 320 239 2178 133 0 0 chr1 215983506 215983807 -26680546 + AluY SINE Alu 1 301 -10 3895 113 37 40 chr1 215984443 215985098 -26679255 + MER39B LTR ERV1 1 653 0 353 289 101 34 chr1 215986001 215986150 -26678203 - L2 LINE L2 0 3313 3155 28 0 0 0 chr1 215986150 215986178 -26678175 + AT_rich Low_complexity Low_complexity 1 28 0 863 263 51 4 chr1 215986197 215986433 -26677920 - MIR SINE MIR 0 262 16 463 310 69 31 chr1 215987045 215987306 -26677047 - L1ME4a LINE L1 -240 5881 5611 41035 50 2 1 chr1 215987322 215993456 -26670897 + L1PA5 LINE L1 11 6150 -4 201 162 0 0 chr1 215993465 215993502 -26670851 + A-rich Low_complexity Low_complexity 1 37 0 753 286 40 12 chr1 215996154 215996406 -26667947 + MIR SINE MIR 4 262 0 183 374 17 17 chr1 215996492 215996607 -26667746 - L3b LINE CR1 -349 1234 1120 185 263 79 26 chr1 215996732 215996808 -26667545 + MIR SINE MIR 104 183 -79 22 35 0 0 chr1 215996909 215996938 -26667415 + AT_rich Low_complexity Low_complexity 1 29 0 1362 192 29 53 chr1 215997627 215998044 -26666309 + LTR37A LTR ERV1 19 425 -1 23 33 0 0 chr1 215998547 215998577 -26665776 + AT_rich Low_complexity Low_complexity 1 30 0 467 345 7 7 chr1 215998577 215998716 -26665637 + L2 LINE L2 3134 3272 0 1778 113 8 15 chr1 216102278 216102543 -26561810 + AluSq SINE Alu 31 293 -20 280 306 91 25 chr1 216102728 216102849 -26561504 - MER5A DNA MER1_type -56 133 5 236 219 32 57 chr1 216103288 216103411 -26560942 - L1M4 LINE L1 -2916 3230 3111 1015 199 26 83 chr1 216103651 216103953 -26560400 + AluJo SINE Alu 12 296 -16 22 0 0 0 chr1 216103977 216103999 -26560354 + AT_rich Low_complexity Low_complexity 1 22 0 2091 105 7 0 chr1 216104525 216104825 -26559528 - AluSx SINE Alu 0 307 6 255 209 70 23 chr1 216104960 216105046 -26559307 + MLT1J LTR MaLR 401 490 -21 363 257 79 0 chr1 216105378 216105479 -26558874 + MIR SINE MIR 83 191 -71 1659 189 0 0 chr1 216105628 216105909 -26558444 - AluJb SINE Alu -6 306 26 2010 125 13 16 chr1 216106571 216106908 -26557445 + AluSx SINE Alu 2 337 0 2063 107 10 13 chr1 216106915 216107224 -26557129 + AluSg SINE Alu 3 310 0 1560 197 17 3 chr1 216109133 216109427 -26554926 + AluJo SINE Alu 1 298 -14 202 311 0 0 chr1 216109921 216109966 -26554387 - L2 LINE L2 -1 3271 3227 319 257 0 18 chr1 216110432 216110545 -26553808 + (CA)n Simple_repeat Simple_repeat 1 111 0 4866 163 17 0 chr1 216111068 216111842 -26552511 + L1M1 LINE L1 11 797 -6768 1728 156 13 13 chr1 216111948 216112262 -26552091 + HERVH LTR ERV1 2674 2987 -4726 862 149 20 0 chr1 216112256 216112404 -26551949 + HERVH LTR ERV1 3140 3290 -4423 * 3465 107 4 6 chr1 216112394 216112897 -26551456 + HERVH LTR ERV1 3492 3993 -3720 2834 150 2 4 chr1 216112899 216113517 -26550836 + HERVH LTR ERV1 4488 5149 -2564 1352 124 23 9 chr1 216113518 216113735 -26550618 + HERVH LTR ERV1 5600 5819 -1894 * 2574 77 48 13 chr1 216113733 216114112 -26550241 + HERVH LTR ERV1 7322 7713 0 2636 102 59 39 chr1 216114112 216114551 -26549802 + LTR7 LTR ERV1 1 448 -2 4832 133 48 5 chr1 216114904 216115651 -26548702 + MER4E LTR ERV1 1 779 0 256 148 37 19 chr1 216115940 216115994 -26548359 + MER104 DNA Tc2 74 128 -52 3621 64 0 7 chr1 216115997 216116448 -26547905 - LTR7 LTR ERV1 -2 448 1 2574 72 45 13 chr1 216116448 216116824 -26547529 - HERVH LTR ERV1 0 7713 7326 1367 121 18 36 chr1 216116826 216117050 -26547303 - HERVH LTR ERV1 -1894 5819 5600 4294 156 1 1 chr1 216117051 216117713 -26546640 - HERVH LTR ERV1 -2564 5149 4488 3327 109 6 8 chr1 216117715 216118210 -26546143 - HERVH LTR ERV1 -3720 3993 3500 813 182 20 0 chr1 216118209 216118357 -26545996 - HERVH LTR ERV1 -4423 3290 3140 * 20259 88 12 40 chr1 216118351 216121426 -26542927 - HERVH LTR ERV1 -4726 2987 1 1637 94 20 8 chr1 216121428 216121673 -26542680 - LTR7 LTR ERV1 -2 448 201 8511 199 53 30 chr1 216121773 216123890 -26540463 + L1MA3 LINE L1 2190 4258 -3466 2787 110 5 0 chr1 216123890 216124263 -26540090 + L1PA8A LINE L1 5744 6118 -13 8511 199 53 30 chr1 216124263 216126008 -26538345 + L1MA3 LINE L1 4258 6184 -1540 423 0 0 0 chr1 216126008 216126055 -26538298 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 8511 199 53 30 chr1 216126055 216127400 -26536953 + L1MA3 LINE L1 6184 7497 -227 1327 117 56 16 chr1 216127435 216127684 -26536669 + L1MA3 LINE L1 7466 7724 0 284 241 0 0 chr1 216127889 216127947 -26536406 + AluJ/FRAM SINE Alu 223 280 -22 303 28 0 0 chr1 216127947 216127983 -26536370 + (GA)n Simple_repeat Simple_repeat 1 36 0 260 279 58 39 chr1 216128240 216128344 -26536009 - L2 LINE L2 -4 3309 3204 270 331 50 2 chr1 216128614 216128786 -26535567 + MIR SINE MIR 45 262 0 837 204 11 0 chr1 216128906 216129082 -26535271 - MER5B DNA MER1_type 0 178 1 291 167 0 0 chr1 216129182 216129230 -26535123 - MLT2B1 LTR ERVL 0 520 473 216 135 0 0 chr1 216129233 216129270 -26535083 + (CA)n Simple_repeat Simple_repeat 1 37 0 1412 214 97 42 chr1 216129277 216129730 -26534623 - MLT2B1 LTR ERVL -41 479 2 507 302 14 14 chr1 216129912 216130051 -26534302 - MIR3 SINE MIR -40 168 30 344 319 113 11 chr1 216130808 216130993 -26533360 + MIR SINE MIR 42 245 -17 194 286 0 0 chr1 216131148 216131197 -26533156 - MIR SINE MIR -67 141 93 1462 197 55 11 chr1 216132663 216132937 -26531416 + AluJo SINE Alu 1 286 -26 2024 256 23 6 chr1 216133354 216133886 -26530467 - LOR1-int LTR ERV1 -383 7154 6614 3012 223 93 40 chr1 216133922 216134888 -26529465 - LOR1-int LTR ERV1 -408 5855 4942 1804 133 0 8 chr1 216134888 216135137 -26529216 + AluSg SINE Alu 1 247 -63 3012 223 93 40 chr1 216135137 216136024 -26528329 - LOR1-int LTR ERV1 -1321 4942 2709 2880 125 15 4 chr1 216136036 216136623 -26527730 + L1M1 LINE L1 3186 3776 -3789 1622 81 18 60 chr1 216136619 216136902 -26527451 - L1M1 LINE L1 -4590 2975 2705 * 11265 193 47 6 chr1 216136886 216139165 -26525188 - L1M1 LINE L1 -5177 2388 18 498 207 80 106 chr1 216139178 216139767 -26524586 - LOR1-int LTR ERV1 -2697 2426 1552 431 181 0 132 chr1 216139801 216139945 -26524408 + LTR7 LTR ERV1 1 125 -325 219 198 12 25 chr1 216140847 216140928 -26523425 + (ATG)n Simple_repeat Simple_repeat 2 81 0 4947 133 36 21 chr1 216141393 216142057 -26522296 - L1PA15 LINE L1 0 6165 5512 240 35 0 0 chr1 216142057 216142086 -26522267 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1609 180 7 11 chr1 216142088 216142372 -26521981 - AluJb SINE Alu -29 283 1 4947 133 36 21 chr1 216142372 216142660 -26521693 - L1PA15 LINE L1 -653 5512 5200 364 257 79 0 chr1 216143416 216143517 -26520836 + MIR SINE MIR 83 191 -71 1729 184 0 0 chr1 216143666 216143949 -26520404 - AluJb SINE Alu -4 308 26 2072 115 13 16 chr1 216144605 216144917 -26519436 + AluSx SINE Alu 2 312 0 237 125 0 0 chr1 216144926 216144956 -26519397 + (GAAA)n Simple_repeat Simple_repeat 2 34 -7 2341 91 0 3 chr1 216144956 216145263 -26519090 + AluSg SINE Alu 3 308 -2 237 125 0 0 chr1 216145263 216145272 -26519081 + (GAAA)n Simple_repeat Simple_repeat 33 41 0 200 352 23 39 chr1 216145883 216146011 -26518342 + MIR3 SINE MIR 35 160 -48 25 0 0 0 chr1 216146195 216146220 -26518133 + AT_rich Low_complexity Low_complexity 1 25 0 17783 92 13 14 chr1 216147284 216150033 -26514320 - HERVH LTR ERV1 -4966 2747 1 3291 71 7 9 chr1 216150035 216150484 -26513869 - LTR7 LTR ERV1 -2 448 1 240 35 0 0 chr1 216150623 216150652 -26513701 + (TG)n Simple_repeat Simple_repeat 1 29 0 389 329 24 24 chr1 216151226 216151390 -26512963 + MIR SINE MIR 25 188 -74 2690 137 2 33 chr1 216151544 216151594 -26512759 - L1MB2 LINE L1 -1 6170 6120 2390 93 0 3 chr1 216151594 216151895 -26512458 - AluSc SINE Alu -9 300 1 2690 137 2 33 chr1 216151895 216152325 -26512028 - L1MB2 LINE L1 -51 6120 5705 387 0 0 0 chr1 216153164 216153207 -26511146 + (TG)n Simple_repeat Simple_repeat 1 43 0 218 332 66 77 chr1 216153697 216153893 -26510460 - L2 LINE L2 -132 3140 2947 1046 255 85 6 chr1 216153964 216154305 -26510048 - LTR41 LTR ERVL -405 368 1 23 0 0 0 chr1 216154536 216154559 -26509794 + AT_rich Low_complexity Low_complexity 1 23 0 7888 129 8 42 chr1 216154615 216155959 -26508394 + HSMAR2 DNA Mariner 2 1300 -2 1016 281 43 47 chr1 216156058 216156589 -26507764 - ERVL LTR ERVL -416 5348 4820 561 161 151 17 chr1 216156723 216156975 -26507378 - L1M LINE L1 -740 5424 5154 1842 278 12 0 chr1 216156979 216157465 -26506888 - L2 LINE L2 -963 2351 1860 199 359 109 29 chr1 216157525 216157801 -26506552 - L2 LINE L2 -2365 949 652 216 167 0 0 chr1 216158138 216158174 -26506179 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 315 56 43 chr1 216158592 216158754 -26505599 + MIR SINE MIR 28 191 -71 453 324 64 34 chr1 216158932 216159176 -26505177 + MIR SINE MIR 12 257 -5 201 74 0 0 chr1 216159437 216159464 -26504889 + (CA)n Simple_repeat Simple_repeat 1 27 0 856 232 22 0 chr1 216160610 216160795 -26503558 - MER5A DNA MER1_type 0 189 1 253 353 15 44 chr1 216160804 216160940 -26503413 + MIR SINE MIR 21 152 -110 183 363 16 24 chr1 216161372 216161496 -26502857 + MIR SINE MIR 24 146 -62 194 340 117 11 chr1 216162110 216162204 -26502149 - L2 LINE L2 -31 3241 3138 318 339 27 48 chr1 216162339 216162390 -26501963 - MIR SINE MIR -34 228 177 1564 198 24 35 chr1 216162390 216162763 -26501590 + MER93b LTR ERV1 5 373 0 318 339 27 48 chr1 216162763 216162897 -26501456 - MIR SINE MIR -85 177 47 3394 136 25 0 chr1 216163229 216163743 -26500610 - MER1A DNA MER1_type 0 527 1 293 345 48 24 chr1 216164750 216164918 -26499435 + MIR3 SINE MIR 37 208 0 1773 112 15 37 chr1 216165897 216166165 -26498188 + AluSx SINE Alu 40 301 -11 816 153 8 8 chr1 216166263 216166394 -26497959 - FLAM_C SINE Alu -12 131 1 515 311 59 11 chr1 216166616 216166973 -26497380 - L1ME4a LINE L1 -217 5904 5531 225 128 51 0 chr1 216167001 216167067 -26497286 - Alu SINE Alu 0 311 244 1868 149 7 0 chr1 216167171 216167476 -26496877 - AluJb SINE Alu 0 307 1 370 287 80 92 chr1 216167599 216167800 -26496553 - L1ME4a LINE L1 -799 5347 5152 2012 147 3 6 chr1 216167800 216168113 -26496240 + AluSx SINE Alu 1 312 0 370 287 80 92 chr1 216168113 216168312 -26496041 - L1ME4a LINE L1 -994 5152 4952 288 276 133 10 chr1 216168414 216168512 -26495841 + LTR16A LTR ERVL 25 134 -316 584 258 28 42 chr1 216168537 216168690 -26495663 + LTR16A LTR ERVL 241 392 -58 2016 143 40 27 chr1 216168690 216169060 -26495293 + THE1C LTR MaLR 1 375 0 584 258 28 42 chr1 216169060 216169119 -26495234 + LTR16A LTR ERVL 392 450 0 737 265 59 71 chr1 216169126 216169466 -26494887 + MER46C DNA MER2_type 2 337 -1 367 331 46 41 chr1 216169534 216170439 -26493914 - L1ME4a LINE L1 -1408 4738 3829 685 302 138 19 chr1 216170788 216171351 -26493002 + L1MC4a LINE L1 5296 5925 -1883 2155 96 0 27 chr1 216171454 216171755 -26492598 + AluSq SINE Alu 1 293 -20 21 57 0 0 chr1 216171904 216171939 -26492414 + AT_rich Low_complexity Low_complexity 1 35 0 287 306 91 25 chr1 216171939 216172060 -26492293 - MER5A DNA MER1_type -56 133 5 501 304 108 35 chr1 216172412 216172784 -26491569 - L1ME4a LINE L1 -2838 3308 2910 1081 195 26 86 chr1 216172839 216173142 -26491211 + AluJo SINE Alu 12 296 -16 22 0 0 0 chr1 216173166 216173188 -26491165 + AT_rich Low_complexity Low_complexity 1 22 0 2427 24 0 14 chr1 216173714 216174024 -26490329 - AluY SINE Alu 0 306 1 1958 178 71 77 chr1 216174345 216174644 -26489709 + MER34C LTR ERV1 28 324 -261 2326 126 0 0 chr1 216174644 216174954 -26489399 - AluSg SINE Alu 0 310 1 1958 178 71 77 chr1 216174954 216175215 -26489138 + MER34C LTR ERV1 324 585 0 414 308 77 0 chr1 216175264 216175459 -26488894 + MIR SINE MIR 32 241 -21 2397 169 48 60 chr1 216175600 216176116 -26488237 + LTR54 LTR ERV1 1 510 0 900 237 34 65 chr1 216176117 216176379 -26487974 + LTR23-int LTR ERV1 1900 2153 -4178 600 260 7 20 chr1 216176379 216176529 -26487824 + LTR23-int LTR ERV1 2106 2253 -4078 432 238 18 92 chr1 216176572 216176736 -26487617 + LTR23-int LTR ERV1 467 618 -6919 2174 116 0 0 chr1 216176926 216177220 -26487133 + AluSg SINE Alu 1 294 -16 249 33 0 0 chr1 216177349 216177379 -26486974 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 450 244 43 13 chr1 216178112 216178259 -26486094 + LTR23-int LTR ERV1 850 4052 -3366 631 247 148 21 chr1 216178259 216178502 -26485851 + MER34C LTR ERV1 157 430 -155 1236 225 55 68 chr1 216178502 216179115 -26485238 + LTR23-int LTR ERV1 1415 1831 -3292 1518 186 8 8 chr1 216179147 216179411 -26484942 + AluJo SINE Alu 34 297 -15 346 239 114 30 chr1 216179473 216179640 -26484713 + LTR23-int LTR ERV1 1731 1911 -3025 1470 214 42 87 chr1 216179640 216180111 -26484242 - LTR7 LTR ERV1 0 450 1 707 67 0 67 chr1 216180457 216180562 -26483791 - L1PA6 LINE L1 0 6154 6057 33716 74 5 7 chr1 216180576 216185702 -26478651 - L1PA6 LINE L1 -190 5964 847 628 115 11 0 chr1 216185700 216185787 -26478566 - L1PA6 LINE L1 -6048 98 11 * 10626 230 21 30 chr1 216186173 216189513 -26474840 - HERVH LTR ERV1 -3243 3286 590 1004 207 30 12 chr1 216189622 216190026 -26474327 - HERVH LTR ERV1 -7267 446 2 699 162 7 29 chr1 216190027 216190163 -26474190 - LTR7 LTR ERV1 0 450 318 452 35 0 0 chr1 216190263 216190320 -26474033 + MADE1 DNA Mariner 24 80 0 222 306 79 33 chr1 216190802 216190925 -26473428 + MER5B DNA MER1_type 51 178 0 194 278 86 80 chr1 216191640 216191791 -26472562 - MIR SINE MIR -83 179 28 3697 143 14 30 chr1 216191986 216192553 -26471800 - L1MB1 LINE L1 -1 6167 5609 781 197 0 15 chr1 216192553 216192685 -26471668 - FLAM_C SINE Alu -2 131 2 3697 143 14 30 chr1 216192685 216192739 -26471614 - L1MB1 LINE L1 -559 5609 5556 422 159 15 0 chr1 216192777 216192855 -26471498 - L1MB1 LINE L1 -588 5582 5504 197 125 31 0 chr1 216193172 216193204 -26471149 - L2 LINE L2 -38 3234 3202 1341 280 58 35 chr1 216194407 216194943 -26469410 + MLT1H LTR MaLR 2 549 0 342 0 0 0 chr1 216195043 216195081 -26469272 + (TG)n Simple_repeat Simple_repeat 2 39 0 267 31 0 0 chr1 216195082 216195114 -26469239 + (TTG)n Simple_repeat Simple_repeat 2 33 0 231 270 11 34 chr1 216196017 216196106 -26468247 - MIR SINE MIR -71 191 105 772 243 6 33 chr1 216196900 216197081 -26467272 - MER20 DNA MER1_type -1 218 43 386 308 9 0 chr1 216197695 216197802 -26466551 + MIR SINE MIR 48 155 -107 464 258 55 44 chr1 216197871 216198053 -26466300 - MIR SINE MIR -71 191 8 414 68 0 0 chr1 216198557 216198616 -26465737 + AluSp/q SINE Alu 250 308 -5 2433 80 0 0 chr1 216199352 216199651 -26464702 - AluY SINE Alu -12 299 1 321 89 0 0 chr1 216200391 216200436 -26463917 + (TG)n Simple_repeat Simple_repeat 2 46 0 237 65 0 0 chr1 216200578 216200609 -26463744 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 453 130 57 5 chr1 216200690 216200813 -26463540 + MER53 DNA DNA 1 189 0 399 349 60 48 chr1 216201628 216202026 -26462327 + L2 LINE L2 2348 2750 -564 356 341 31 47 chr1 216202058 216202316 -26462037 + L2 LINE L2 2837 3090 -182 186 388 61 10 chr1 216202382 216202480 -26461873 + L2 LINE L2 3182 3284 -29 1927 254 73 10 chr1 216203818 216204323 -26460030 - MLT1H1 LTR MaLR -7 548 12 541 327 46 28 chr1 216204446 216204773 -26459580 + MER102b DNA MER1_type 9 341 0 1728 130 34 0 chr1 216205125 216205394 -26458959 + MER39 LTR ERV1 362 639 -68 423 287 128 15 chr1 216205431 216205766 -26458587 - L1M4 LINE L1 -1127 5019 4647 274 315 25 30 chr1 216205759 216205956 -26458397 - L1M4 LINE L1 -1757 4389 4194 * 698 262 5 10 chr1 216205962 216206168 -26458185 - L1M4 LINE L1 -2051 4095 3891 247 265 197 0 chr1 216206319 216206451 -26457902 - L1M4 LINE L1 -2447 3699 3542 619 271 32 27 chr1 216208654 216208842 -26455511 - L2 LINE L2 -1 3312 3124 584 266 26 19 chr1 216209052 216209227 -26455126 - MIR SINE MIR -50 212 38 274 325 96 54 chr1 216209286 216209459 -26454894 + L3b LINE CR1 1277 1468 -115 1249 214 5 5 chr1 216209459 216209683 -26454670 + MER58A DNA MER1_type 1 224 0 274 325 96 54 chr1 216209683 216209789 -26454564 + L3b LINE CR1 1468 1568 -15 349 276 86 0 chr1 216210478 216210594 -26453759 + MIR3 SINE MIR 64 189 -19 6363 155 21 7 chr1 216210898 216212028 -26452325 + L1MC1 LINE L1 5191 6333 0 242 336 37 8 chr1 216212215 216212349 -26452004 + L2 LINE L2 2724 2861 -453 1830 280 222 21 chr1 216212483 216213633 -26450720 - L2 LINE L2 0 3313 1937 311 285 85 39 chr1 216213680 216213810 -26450543 + L2 LINE L2 3137 3272 0 201 312 80 51 chr1 216213877 216214015 -26450338 + MIR3 SINE MIR 60 201 -7 1679 145 67 0 chr1 216215044 216215149 -26449204 + AluJo SINE Alu 1 98 -214 207 0 0 0 chr1 216215149 216215172 -26449181 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1679 145 67 0 chr1 216215172 216215335 -26449018 + AluJo SINE Alu 98 287 -25 237 33 0 0 chr1 216215342 216215372 -26448981 + (CA)n Simple_repeat Simple_repeat 2 31 0 631 34 34 0 chr1 216215372 216215461 -26448892 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 336 308 50 8 chr1 216216871 216216991 -26447362 + MIR SINE MIR 28 152 -110 2305 78 0 0 chr1 216217069 216217377 -26446976 - AluY SINE Alu 0 308 1 737 276 29 32 chr1 216217667 216217913 -26446440 + MIR SINE MIR 10 254 -8 214 317 24 12 chr1 216220120 216220202 -26444151 - MIR3 SINE MIR -15 193 111 2203 86 0 0 chr1 216220512 216220790 -26443563 + AluSc SINE Alu 5 282 -27 669 211 181 130 chr1 216221492 216221924 -26442429 - LTR16A1 LTR ERVL 0 457 4 2470 55 7 0 chr1 216221968 216222257 -26442096 + AluY SINE Alu 1 291 -20 2138 229 40 68 chr1 216222411 216223137 -26441216 - L1ME3A LINE L1 0 6170 5465 32 0 0 0 chr1 216223405 216223437 -26440916 + AT_rich Low_complexity Low_complexity 1 32 0 311 279 202 9 chr1 216224969 216225108 -26439245 + MER5A DNA MER1_type 15 189 0 4568 107 92 99 chr1 216225230 216226660 -26437693 + pTR5 LTR ERV1 66 2438 0 3776 70 0 5 chr1 216226675 216227121 -26437232 + MLT2A1 LTR ERVL 1 444 0 1671 159 3 41 chr1 216227153 216227448 -26436905 + AluJb SINE Alu 1 284 -28 248 198 173 12 chr1 216227474 216227555 -26436798 + MIR SINE MIR 80 173 -89 700 295 166 38 chr1 216228095 216228791 -26435562 - L2 LINE L2 0 3313 2525 308 216 102 40 chr1 216228994 216229170 -26435183 - MER97c DNA MER1_type? -37 1053 867 2556 243 75 28 chr1 216229312 216230130 -26434223 - MER97b DNA MER1_type? -195 858 3 603 266 60 30 chr1 216230379 216230612 -26433741 - MER102b DNA MER1_type -18 323 84 240 250 0 18 chr1 216230623 216230679 -26433674 + GA-rich Low_complexity Low_complexity 3 57 0 337 139 241 0 chr1 216230835 216230914 -26433439 + MER4A LTR ERV1 1 98 -566 1754 115 164 80 chr1 216230914 216231287 -26433066 + MER4A LTR ERV1 261 664 0 1550 209 118 31 chr1 216232246 216232671 -26431682 - MLT1C LTR MaLR 0 467 6 420 224 98 63 chr1 216233233 216233407 -26430946 - MIR SINE MIR -30 232 53 334 270 177 28 chr1 216236793 216237008 -26427345 - MIR SINE MIR -10 252 6 254 296 74 49 chr1 216237181 216237343 -26427010 - MIR SINE MIR -2 260 95 862 256 10 10 chr1 216237833 216238032 -26426321 + MER63A DNA MER1_type 11 209 -1 183 330 121 0 chr1 216238034 216238125 -26426228 + MIR SINE MIR 41 142 -66 669 128 10 10 chr1 216238758 216238860 -26425493 - THE1B LTR MaLR 0 364 263 * 680 81 152 0 chr1 216238858 216238957 -26425396 - THE1B LTR MaLR -250 114 1 1583 77 0 5 chr1 216238957 216239165 -26425188 - THE1B-int LTR MaLR 0 1580 1374 * 8185 101 7 0 chr1 216239161 216240256 -26424097 - THE1B-int LTR MaLR -460 1120 18 2323 128 48 17 chr1 216240271 216240624 -26423729 - THE1B LTR MaLR 0 364 1 2137 119 12 12 chr1 216240624 216240933 -26423420 + LOR1a LTR ERV1 18 329 -168 235 163 139 0 chr1 216240932 216240975 -26423378 - LOR1a LTR ERV1 -62 435 387 * 1174 112 0 0 chr1 216241033 216241194 -26423159 + LOR1a LTR ERV1 337 497 0 285 236 45 11 chr1 216241244 216241333 -26423020 + MARNA DNA Mariner 245 336 -250 1118 178 9 33 chr1 216242560 216242773 -26421580 - MER3 DNA MER1_type -1 208 1 896 289 65 38 chr1 216243666 216244064 -26420289 + MLT1I LTR MaLR 1 409 0 614 133 0 0 chr1 216244365 216244448 -26419905 + AluS SINE Alu 2 84 -228 1255 296 26 17 chr1 216244466 216244882 -26419471 - LTR16A LTR ERVL 0 450 31 276 319 104 20 chr1 216248266 216248450 -26415903 - MIR SINE MIR -50 212 18 515 285 31 26 chr1 216250168 216250361 -26413992 + MIR SINE MIR 29 222 -40 3212 193 56 14 chr1 216250382 216251009 -26413344 + MER82 DNA MER2_type 1 653 0 539 286 24 38 chr1 216251592 216251667 -26412686 - MIR SINE MIR -36 226 151 2433 91 0 0 chr1 216251667 216251976 -26412377 - AluSc SINE Alu 0 309 1 539 286 24 38 chr1 216251976 216252110 -26412243 - MIR SINE MIR -111 151 20 298 253 29 68 chr1 216252665 216252794 -26411559 + MLT1I LTR MaLR 81 174 -235 574 206 60 25 chr1 216253003 216253171 -26411182 + MLT1I LTR MaLR 231 447 -3 477 0 0 0 chr1 216254963 216255016 -26409337 + (CA)n Simple_repeat Simple_repeat 2 54 0 294 29 0 0 chr1 216255015 216255050 -26409303 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 238 299 67 12 chr1 216256239 216256403 -26407950 - L1ME3A LINE L1 -8 6162 5990 1629 211 52 57 chr1 216256470 216256930 -26407423 - MLT1C LTR MaLR -2 465 8 899 196 27 55 chr1 216257293 216257497 -26406856 + MER31B LTR ERV1 6 203 -263 1585 188 126 42 chr1 216257497 216257911 -26406442 - MSTB2 LTR MaLR 0 457 1 775 261 70 12 chr1 216257911 216258168 -26406185 + MER31B LTR ERV1 195 466 0 1923 224 91 66 chr1 216258169 216258985 -26405368 - L1MC5 LINE L1 -564 7397 6568 234 225 0 0 chr1 216258985 216259065 -26405288 + (TA)n Simple_repeat Simple_repeat 2 81 0 494 325 78 47 chr1 216259268 216259975 -26404378 - HAL1b LINE L1 -517 831 103 21 0 0 0 chr1 216260006 216260027 -26404326 + AT_rich Low_complexity Low_complexity 1 21 0 2382 80 0 0 chr1 216260125 216260412 -26403941 - AluY SINE Alu -24 287 1 1440 223 65 33 chr1 216262066 216262577 -26401776 + L1MC5 LINE L1 7405 7931 -30 184 212 0 0 chr1 216263323 216263356 -26400997 + L2 LINE L2 3262 3294 -19 630 276 35 35 chr1 216263634 216263837 -26400516 + MIR SINE MIR 45 247 -15 2491 78 3 0 chr1 216264476 216264782 -26399571 - AluSc SINE Alu -2 307 1 24 53 0 0 chr1 216266582 216266620 -26397733 + AT_rich Low_complexity Low_complexity 1 38 0 2507 54 16 25 chr1 216266621 216266935 -26397418 + AluY SINE Alu 1 311 0 407 183 12 0 chr1 216267026 216267108 -26397245 - MER33 DNA MER1_type 0 363 281 1094 139 0 0 chr1 216267120 216267264 -26397089 + FRAM SINE Alu 11 154 -22 970 224 38 8 chr1 216267264 216267512 -26396841 - MER33 DNA MER1_type -74 250 1 1194 204 14 0 chr1 216267556 216267777 -26396576 - AluJb SINE Alu -5 307 84 192 176 0 0 chr1 216268160 216268194 -26396159 - L2 LINE L2 -8 3264 3231 183 371 0 52 chr1 216268293 216268409 -26395944 - L2 LINE L2 -194 3078 2969 249 271 0 29 chr1 216268500 216268570 -26395783 + L3 LINE CR1 891 958 -619 247 289 99 33 chr1 216268771 216268892 -26395461 + MIR3 SINE MIR 1 129 -79 291 28 0 0 chr1 216269651 216269687 -26394666 + (CA)n Simple_repeat Simple_repeat 1 36 0 819 200 95 50 chr1 216270585 216270785 -26393568 - MER63A DNA MER1_type -1 209 1 317 219 85 0 chr1 216270958 216271040 -26393313 + L2 LINE L2 3223 3311 -2 288 374 131 24 chr1 216272135 216272715 -26391638 + L2 LINE L2 2088 2729 -585 296 344 56 25 chr1 216272759 216272919 -26391434 + MER5A DNA MER1_type 25 189 0 257 176 0 20 chr1 216273790 216273841 -26390512 + L2 LINE L2 3262 3311 -2 321 267 69 10 chr1 216274519 216274620 -26389733 - MIR3 SINE MIR -15 193 87 388 342 116 0 chr1 216275074 216275229 -26389124 + MIR SINE MIR 16 188 -74 234 0 0 0 chr1 216276068 216276094 -26388259 + (T)n Simple_repeat Simple_repeat 1 26 0 558 244 18 0 chr1 216276219 216276383 -26387970 + L2 LINE L2 2699 2865 -449 549 291 113 22 chr1 216278248 216278478 -26385875 + MIR SINE MIR 12 262 0 210 363 0 0 chr1 216278575 216278655 -26385698 - MIR SINE MIR -87 121 42 204 40 0 0 chr1 216282601 216282626 -26381727 + (A)n Simple_repeat Simple_repeat 1 25 0 535 259 19 37 chr1 216284375 216284537 -26379816 + MER5B DNA MER1_type 1 159 -19 473 215 7 104 chr1 216284835 216284979 -26379374 - MIR SINE MIR -65 143 28 816 217 74 0 chr1 216285492 216285667 -26378686 + MER5A DNA MER1_type 1 188 -1 394 213 0 0 chr1 216286000 216286075 -26378278 + MER2 DNA MER2_type 271 345 0 282 87 0 0 chr1 216286103 216286149 -26378204 + (TA)n Simple_repeat Simple_repeat 1 46 0 279 0 0 0 chr1 216286152 216286183 -26378170 + (TC)n Simple_repeat Simple_repeat 2 32 0 363 23 0 0 chr1 216286199 216286243 -26378110 + (GA)n Simple_repeat Simple_repeat 2 45 0 1215 227 48 209 chr1 216286301 216286662 -26377691 + L2 LINE L2 59 476 -2838 2164 115 3 0 chr1 216286662 216286958 -26377395 - AluSc SINE Alu -12 297 1 1215 227 48 209 chr1 216286958 216287478 -26376875 + L2 LINE L2 476 717 -2597 1932 108 6 81 chr1 216287478 216287801 -26376552 - AluSx SINE Alu -13 299 1 1215 227 48 209 chr1 216287801 216288060 -26376293 + L2 LINE L2 717 1016 -2298 1682 184 67 32 chr1 216288085 216288460 -26375893 + MSTD LTR MaLR 1 388 -8 1687 259 342 26 chr1 216288464 216289468 -26374885 + L2 LINE L2 1055 1740 -1573 2221 83 26 23 chr1 216289468 216289770 -26374583 - AluY SINE Alu -8 303 1 1687 259 342 26 chr1 216289770 216290347 -26374006 + L2 LINE L2 1740 2133 -1180 921 24 24 0 chr1 216290347 216290471 -26373882 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 1687 259 342 26 chr1 216290471 216290596 -26373757 + L2 LINE L2 2133 3311 -2 216 244 0 0 chr1 216290775 216290801 -26373552 + CT-rich Low_complexity Low_complexity 4 32 -16 1685 182 13 3 chr1 216290801 216291103 -26373250 - AluJo SINE Alu -7 305 1 216 244 0 0 chr1 216291103 216291121 -26373232 + CT-rich Low_complexity Low_complexity 31 48 0 530 203 42 0 chr1 216291138 216291256 -26373097 - MER94 DNA DNA -11 123 1 552 239 23 0 chr1 216292644 216292774 -26371579 - MER94 DNA DNA -1 133 1 293 303 22 0 chr1 216292819 216292908 -26371445 + L3 LINE CR1 1391 1481 -96 182 265 72 24 chr1 216293182 216293265 -26371088 - MIR SINE MIR -68 140 65 303 312 178 24 chr1 216293716 216293969 -26370384 - L3 LINE CR1 -198 1379 1088 1719 187 10 3 chr1 216294188 216294482 -26369871 + AluJb SINE Alu 1 296 -16 23 33 0 0 chr1 216294627 216294657 -26369696 + AT_rich Low_complexity Low_complexity 1 30 0 2352 247 48 32 chr1 216295288 216296300 -26368053 - L1M4c LINE L1 -4825 1821 785 1458 174 7 41 chr1 216296797 216297067 -26367286 - AluJb SINE Alu -10 302 42 1675 134 142 39 chr1 216297068 216297455 -26366898 - MSTA LTR MaLR 0 428 2 333 103 0 0 chr1 216297457 216297513 -26366840 - Alu SINE Alu -257 45 2 3522 177 16 4 chr1 216299074 216299779 -26364574 - L1MB4 LINE L1 -32 6148 5436 1589 193 83 9 chr1 216299806 216300446 -26363907 + L1ME1 LINE L1 5019 5706 -458 579 305 15 0 chr1 216300572 216300769 -26363584 + L1ME1 LINE L1 5953 6152 -14 800 114 12 60 chr1 216300769 216300935 -26363418 + MLT1A1 LTR MaLR 1 158 -207 1354 49 0 0 chr1 216300935 216301098 -26363255 + AluY SINE Alu 139 301 -10 787 188 77 11 chr1 216301098 216301279 -26363074 + MLT1A1 LTR MaLR 148 340 -25 28 29 0 0 chr1 216301665 216301700 -26362653 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr1 216302089 216302134 -26362219 + AT_rich Low_complexity Low_complexity 1 45 0 246 360 0 12 chr1 216302926 216303012 -26361341 + L2 LINE L2 3187 3271 -1 199 321 71 0 chr1 216303134 216303190 -26361163 - L2 LINE L2 -54 3218 3159 773 188 0 0 chr1 216304018 216304146 -26360207 + FLAM_A SINE Alu 1 128 -5 210 71 0 0 chr1 216304146 216304174 -26360179 + (GA)n Simple_repeat Simple_repeat 1 28 0 305 286 68 27 chr1 216304326 216304473 -26359880 - MIR SINE MIR -12 250 98 1378 228 126 30 chr1 216306017 216306478 -26357875 - MLT1D LTR MaLR 0 505 1 341 331 50 8 chr1 216306991 216307112 -26357241 - MER5A DNA MER1_type -28 161 36 856 238 65 118 chr1 216307214 216307766 -26356587 + L2 LINE L2 2792 3313 0 357 82 0 0 chr1 216308712 216308761 -26355592 + (TG)n Simple_repeat Simple_repeat 2 50 0 4970 162 10 20 chr1 216309076 216310320 -26354033 + L1MA8 LINE L1 5057 6286 -5 1904 185 90 7 chr1 216310604 216310987 -26353366 + MSTB2 LTR MaLR 1 424 -33 1110 104 35 55 chr1 216310987 216311189 -26353164 - L1PA13 LINE L1 0 6163 5966 1904 185 90 7 chr1 216311189 216311227 -26353126 + MSTB2 LTR MaLR 424 457 0 554 312 65 43 chr1 216311709 216312481 -26351872 + L1MEc LINE L1 446 1234 -4885 295 274 96 15 chr1 216312520 216312826 -26351527 + L1MEc LINE L1 1358 1671 -990 386 236 51 67 chr1 216313130 216313325 -26351028 + L1MEc LINE L1 1973 2164 -3965 11105 115 18 17 chr1 216313331 216315162 -26349191 - Tigger1 DNA MER2_type 0 2418 586 3068 39 0 10 chr1 216315162 216315577 -26348776 - L1P LINE L1 -2918 3228 2818 7144 55 7 1 chr1 216315577 216316499 -26347854 + L1PA5 LINE L1 5228 6154 0 3187 157 31 0 chr1 216316501 216317073 -26347280 - Tigger1 DNA MER2_type -1828 590 1 21 36 0 0 chr1 216317654 216317682 -26346671 + AT_rich Low_complexity Low_complexity 1 28 0 3059 116 8 0 chr1 216317789 216318307 -26346046 + L1M1 LINE L1 2362 2883 -4682 354 256 47 0 chr1 216318315 216318401 -26345952 + L1MC4 LINE L1 6614 6703 -1339 * 374 239 0 22 chr1 216318339 216318431 -26345922 - L1MC4 LINE L1 -1339 6703 6614 245 106 0 43 chr1 216318433 216318480 -26345873 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 234 276 23 0 chr1 216318492 216318579 -26345774 + L1MC4 LINE L1 6615 6703 -1339 * 236 303 0 0 chr1 216318515 216318604 -26345749 - L1MC4 LINE L1 -1339 6703 6615 306 283 0 33 chr1 216318606 216318698 -26345655 + L1MC4 LINE L1 6615 6703 -1339 264 226 0 0 chr1 216318699 216318761 -26345592 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 240 261 23 0 chr1 216318764 216318852 -26345501 - L1MC4 LINE L1 -1339 6703 6614 228 258 0 22 chr1 216318800 216318889 -26345464 + L1MC4 LINE L1 6616 6702 -1340 * 326 292 45 0 chr1 216318891 216318980 -26345373 + L1MC4 LINE L1 6615 6707 -1335 297 47 0 0 chr1 216318980 216319023 -26345330 - L1M1 LINE L1 -4208 3357 3315 297 47 0 0 chr1 216319054 216319097 -26345256 - L1M1 LINE L1 -4208 3357 3315 471 83 0 83 chr1 216319128 216319224 -26345129 - L1M1 LINE L1 -4208 3357 3270 22 0 0 0 chr1 216319226 216319248 -26345105 + AT_rich Low_complexity Low_complexity 1 22 0 14065 157 19 16 chr1 216319248 216324067 -26340286 + L1MA3 LINE L1 2892 7724 0 413 324 14 7 chr1 216324404 216324549 -26339804 + MIR SINE MIR 106 251 -11 19692 100 11 6 chr1 216325522 216331845 -26332508 + L1PA7 LINE L1 8 6460 -9 2130 162 93 6 chr1 216332222 216332586 -26331767 + MSTD LTR MaLR 1 396 0 413 266 46 29 chr1 216332710 216332883 -26331470 - MIR SINE MIR -8 254 79 1549 196 0 42 chr1 216333118 216333403 -26330950 + AluJo SINE Alu 2 274 -38 189 121 0 0 chr1 216333919 216333952 -26330401 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2150 128 0 13 chr1 216334613 216334926 -26329427 + AluSx SINE Alu 1 309 -3 369 196 21 41 chr1 216335153 216335250 -26329103 + MER53 DNA DNA 1 95 -94 207 308 33 11 chr1 216335361 216335452 -26328901 + L3b LINE CR1 1277 1369 -214 195 295 0 16 chr1 216335560 216335621 -26328732 - MIR SINE MIR -174 88 29 309 294 59 10 chr1 216336087 216336189 -26328164 + L2 LINE L2 3202 3308 -5 629 247 98 31 chr1 216336374 216336608 -26327745 + MIR SINE MIR 5 258 -4 220 256 0 100 chr1 216337015 216337105 -26327248 - L2 LINE L2 -1 3312 3232 426 20 0 0 chr1 216337229 216337280 -26327073 + (CA)n Simple_repeat Simple_repeat 1 51 0 1377 173 190 44 chr1 216337503 216337908 -26326445 + MER31B LTR ERV1 1 464 -2 326 267 158 42 chr1 216339462 216339582 -26324771 + MIR SINE MIR 98 231 -31 215 378 20 0 chr1 216340530 216340628 -26323725 - L2 LINE L2 -222 3050 2951 5364 165 24 10 chr1 216340657 216341548 -26322805 + MER4D LTR ERV1 1 903 0 359 291 29 51 chr1 216342247 216342422 -26321931 - MIR SINE MIR 0 262 92 1179 172 5 0 chr1 216342716 216342902 -26321451 + MER5A DNA MER1_type 3 189 0 204 125 0 0 chr1 216342933 216342965 -26321388 + (A)n Simple_repeat Simple_repeat 1 32 0 1694 180 0 20 chr1 216343054 216343359 -26320994 + AluJo SINE Alu 6 304 -8 413 270 9 9 chr1 216343420 216343535 -26320818 - MIR SINE MIR -64 144 30 5677 118 10 32 chr1 216344086 216344239 -26320114 + L1MA2 LINE L1 5454 5609 -695 2228 117 0 10 chr1 216344239 216344547 -26319806 + AluSq SINE Alu 1 305 -8 5677 118 10 32 chr1 216344547 216345263 -26319090 + L1MA2 LINE L1 5609 6304 0 2376 96 0 6 chr1 216346406 216346718 -26317635 + AluSx SINE Alu 1 310 -2 370 186 10 21 chr1 216348504 216348601 -26315752 + GA-rich Low_complexity Low_complexity 2 97 0 233 238 95 0 chr1 216348726 216348810 -26315543 + L2 LINE L2 1816 1907 -1407 2195 174 26 5 chr1 216348811 216349196 -26315157 + MSTB LTR MaLR 1 393 -33 321 347 50 28 chr1 216349296 216349616 -26314737 + L2 LINE L2 1981 2307 -1007 13699 189 14 10 chr1 216349660 216353413 -26310940 + L1PA16 LINE L1 1 3659 -3190 2573 117 43 31 chr1 216353417 216353835 -26310518 - MSTA LTR MaLR -5 423 1 5443 165 26 12 chr1 216353835 216354768 -26309585 - MSTA-int LTR MaLR 0 1651 706 1568 142 12 0 chr1 216354774 216355028 -26309325 - MSTA-int LTR MaLR -1394 257 1 2539 129 45 40 chr1 216355028 216355259 -26309094 - MSTA LTR MaLR 0 428 192 2256 85 0 0 chr1 216355259 216355572 -26308781 - AluY SINE Alu 0 313 1 2539 129 45 40 chr1 216355572 216355765 -26308588 - MSTA LTR MaLR -236 192 1 3348 221 76 25 chr1 216355765 216356305 -26308048 + L1PA16 LINE L1 3655 4166 -2683 225 0 0 0 chr1 216356305 216356330 -26308023 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3348 221 76 25 chr1 216356330 216356778 -26307575 + L1PA16 LINE L1 4166 4693 -2156 * 4025 120 2 2 chr1 216356776 216357385 -26306968 - L1PA8 LINE L1 -966 5180 4572 6630 104 10 3 chr1 216357385 216358382 -26305971 + L1PA8 LINE L1 5170 6172 0 6257 214 10 6 chr1 216358390 216358811 -26305542 + L1PA16 LINE L1 4682 5100 -1769 2014 95 36 0 chr1 216358811 216359112 -26305241 + AluSq SINE Alu 1 311 0 6257 214 10 6 chr1 216359112 216360882 -26303471 + L1PA16 LINE L1 5100 6860 -9 5823 160 30 7 chr1 216360887 216361883 -26302470 + L1MC1 LINE L1 5315 6333 0 1052 212 145 9 chr1 216362051 216362327 -26302026 + L1ME LINE L1 5407 5680 -486 2499 115 53 0 chr1 216362507 216362863 -26301490 + THE1C LTR MaLR 1 375 0 2234 100 10 0 chr1 216363523 216363814 -26300539 - AluSc SINE Alu -15 294 1 201 282 112 41 chr1 216364520 216364690 -26299663 + L2 LINE L2 2829 3010 -262 268 111 32 0 chr1 216365001 216365064 -26299289 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2086 38 0 0 chr1 216365817 216366054 -26298299 - L1PA4 LINE L1 0 6155 5919 278 239 0 0 chr1 216366354 216366425 -26297928 + MER112 DNA MER1_type 155 225 -35 547 276 171 36 chr1 216367136 216367207 -26297146 - MLT1L LTR MaLR -8 607 547 2620 111 31 19 chr1 216367207 216367567 -26296786 + THE1B LTR MaLR 1 364 0 547 276 171 36 chr1 216367567 216367882 -26296471 - MLT1L LTR MaLR -68 547 169 246 309 0 15 chr1 216367831 216367899 -26296454 - LTR67 LTR ERVL -390 167 101 * 302 295 169 6 chr1 216368854 216369020 -26295333 - MIR SINE MIR -21 241 49 1819 152 7 10 chr1 216369028 216369317 -26295036 + AluSx SINE Alu 22 309 -3 498 13 79 0 chr1 216369322 216369398 -26294955 + GA-rich Low_complexity Low_complexity 3 84 0 1286 284 67 51 chr1 216369410 216370483 -26293870 - L1MCa LINE L1 -4403 2719 1434 1417 221 40 51 chr1 216370486 216370820 -26293533 + MLT1A2 LTR MaLR 4 340 -34 198 71 0 0 chr1 216370820 216370848 -26293505 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2172 108 0 0 chr1 216370848 216371125 -26293228 - AluSc SINE Alu -32 277 1 1417 221 40 51 chr1 216371125 216371164 -26293189 + MLT1A2 LTR MaLR 338 374 0 1348 221 30 3 chr1 216371175 216371478 -26292875 - L1MCa LINE L1 -5007 1416 1106 231 235 59 0 chr1 216371472 216371557 -26292796 - L1MCa LINE L1 -4127 2995 2906 * 833 288 20 54 chr1 216371578 216371873 -26292480 - L1MCa LINE L1 -5355 1068 784 292 88 35 0 chr1 216377350 216377407 -26286946 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 564 306 21 16 chr1 216377950 216378136 -26286217 + MER5A DNA MER1_type 1 187 -2 1262 104 11 0 chr1 216379185 216379368 -26284985 - L1PA13 LINE L1 -5 6158 5974 1869 96 121 0 chr1 216380690 216380962 -26283391 + AluSg SINE Alu 1 305 -5 1295 283 14 8 chr1 216380978 216381339 -26283014 - LTR16A LTR ERVL -36 414 52 774 297 85 20 chr1 216381726 216382469 -26281884 + L1MEc LINE L1 990 1780 -4616 22 35 0 0 chr1 216382718 216382747 -26281606 + AT_rich Low_complexity Low_complexity 1 29 0 53 0 0 0 chr1 216385375 216385428 -26278925 + AT_rich Low_complexity Low_complexity 1 53 0 192 40 0 0 chr1 216385698 216385723 -26278630 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 3988 179 52 21 chr1 216385729 216386360 -26277993 - L1PB4 LINE L1 -23 6133 5523 2603 71 0 0 chr1 216386360 216386671 -26277682 - AluY SINE Alu 0 311 1 3988 179 52 21 chr1 216386671 216387731 -26276622 - L1PB4 LINE L1 -633 5523 4384 3901 54 18 4 chr1 216388106 216388813 -26275540 - L1PA6 LINE L1 -380 5774 5064 2994 55 0 0 chr1 216388813 216389178 -26275175 + L1PA6 LINE L1 5776 6141 -13 288 0 0 0 chr1 216389182 216389214 -26275139 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 2124 134 0 0 chr1 216390072 216390371 -26273982 + AluSx SINE Alu 1 299 -13 345 149 0 0 chr1 216391246 216391313 -26273040 + (TG)n Simple_repeat Simple_repeat 2 68 0 649 72 0 10 chr1 216391390 216391487 -26272866 + L1MA2 LINE L1 6209 6304 0 663 201 6 28 chr1 216391953 216392132 -26272221 - L1P LINE L1 -804 5342 5168 2157 133 20 6 chr1 216392168 216392514 -26271839 + L1PB3 LINE L1 5802 6152 -2 29 47 0 0 chr1 216392514 216392557 -26271796 + AT_rich Low_complexity Low_complexity 1 43 0 474 155 124 0 chr1 216392970 216393099 -26271254 - L1MA7 LINE L1 0 6291 6147 1921 148 46 38 chr1 216393102 216393474 -26270879 - THE1C LTR MaLR 0 375 1 417 20 0 0 chr1 216394165 216394215 -26270138 + (CA)n Simple_repeat Simple_repeat 2 51 0 326 343 43 19 chr1 216396312 216396519 -26267834 - L1ME LINE L1 -408 5713 5502 568 277 76 27 chr1 216396642 216396866 -26267487 + MIR SINE MIR 25 259 -3 234 354 24 0 chr1 216396892 216396974 -26267379 + L2 LINE L2 3186 3269 -3 2104 129 0 19 chr1 216397376 216397685 -26266668 + AluSq SINE Alu 1 303 -10 407 147 53 0 chr1 216398109 216398184 -26266169 + MLT1D LTR MaLR 1 79 -426 1848 202 54 7 chr1 216398191 216398597 -26265756 + MSTB1 LTR MaLR 8 432 0 2104 268 59 48 chr1 216398637 216399779 -26264574 - HAL1 LINE L1 -821 1686 533 619 341 52 70 chr1 216400026 216400484 -26263869 + L2 LINE L2 2818 3267 -5 202 189 0 0 chr1 216400491 216400528 -26263825 + GA-rich Low_complexity Low_complexity 4 40 0 2761 10 0 0 chr1 216400675 216400976 -26263377 + AluYa5 SINE Alu 1 301 -10 2486 139 24 56 chr1 216401162 216401664 -26262689 - LTR19A LTR ERV1 0 486 1 2369 209 51 13 chr1 216402926 216403456 -26260897 + MER68 LTR ERV1 10 559 -3 761 255 20 0 chr1 216404460 216404656 -26259697 + MIR SINE MIR 48 247 -15 196 272 99 12 chr1 216406186 216406267 -26258086 - MIR SINE MIR -6 256 169 2084 151 64 17 chr1 216406684 216407088 -26257265 - MSTB LTR MaLR 0 426 4 1103 78 0 14 chr1 216407654 216407795 -26256558 - AluSg1 SINE Alu -170 139 1 329 312 0 51 chr1 216407811 216407871 -26256482 + L1MEd LINE L1 1035 1097 -5022 2380 134 20 0 chr1 216407871 216408228 -26256125 - THE1B LTR MaLR 0 364 1 329 312 0 51 chr1 216408228 216408324 -26256029 + L1MEd LINE L1 1097 1183 -4936 415 334 16 9 chr1 216408352 216408690 -26255663 + L1MEd LINE L1 1249 1630 -860 283 261 106 25 chr1 216409613 216409812 -26254541 + L1MEd LINE L1 997 1211 -4908 298 284 122 20 chr1 216409881 216410029 -26254324 + L2 LINE L2 3140 3302 -11 1412 236 143 41 chr1 216412957 216413391 -26250962 + HsTC2a DNA Tc2 11 538 -1362 4034 135 32 39 chr1 216413391 216414118 -26250235 + MER72 LTR ERV1 1 722 0 1412 236 143 41 chr1 216414118 216414347 -26250006 + HsTC2a DNA Tc2 538 742 -2 187 389 0 0 chr1 216414402 216414474 -26249879 + L2 LINE L2 2839 2910 -362 481 319 65 44 chr1 216414474 216414859 -26249494 + MLT1J1 LTR MaLR 1 393 -53 4588 155 80 16 chr1 216415020 216415874 -26248479 - MER21A LTR ERV1 -23 908 1 309 177 323 0 chr1 216415875 216415971 -26248382 + L2 LINE L2 3012 3138 -175 5314 126 19 21 chr1 216415975 216416872 -26247481 - MER4D LTR ERV1 -8 895 1 294 284 136 30 chr1 216416872 216417041 -26247312 + L2 LINE L2 3127 3313 0 364 248 110 14 chr1 216417958 216418103 -26246250 - MER103 DNA DNA 0 166 8 3154 102 2 32 chr1 216421192 216421690 -26242663 + LTR22B LTR ERVK 7 489 -3 314 240 10 21 chr1 216422188 216422284 -26242069 + (TG)n Simple_repeat Simple_repeat 2 96 0 1041 203 94 0 chr1 216422431 216422633 -26241720 + MER58A DNA MER1_type 4 224 0 819 129 136 0 chr1 216422657 216422804 -26241549 + LTR49 LTR ERV1 260 426 -169 394 163 44 74 chr1 216422794 216422929 -26241424 + LTR48 LTR ERV1 602 732 -55 * 489 319 78 30 chr1 216423285 216424007 -26240346 + HAL1b LINE L1 67 822 -526 1861 156 10 3 chr1 216424055 216424343 -26240010 + AluJb SINE Alu 1 290 -22 2008 104 21 7 chr1 216424665 216424973 -26239380 + AluSx SINE Alu 1 312 0 314 280 96 70 chr1 216425066 216425271 -26239082 + L1M4 LINE L1 2205 2403 -3743 3378 87 87 69 chr1 216425271 216425868 -26238485 - MER4B LTR ERV1 0 610 3 314 280 96 70 chr1 216425868 216426317 -26238036 + L1M4 LINE L1 2403 2887 -3259 2119 113 7 0 chr1 216426317 216426608 -26237745 + AluSx SINE Alu 1 293 -19 314 280 96 70 chr1 216426608 216426767 -26237586 + L1M4 LINE L1 2887 3040 -3106 302 262 19 51 chr1 216426843 216427057 -26237296 + L1M4 LINE L1 3342 3548 -2598 529 299 106 48 chr1 216427899 216428334 -26236019 + LTR33 LTR ERVL 4 463 -58 186 230 81 40 chr1 216428342 216428416 -26235937 + L2 LINE L2 1357 1433 -1881 348 273 91 40 chr1 216429071 216429271 -26235082 + MIR SINE MIR 19 228 -34 1527 217 3 10 chr1 216429273 216429582 -26234771 - AluJo SINE Alu -5 307 1 754 292 29 12 chr1 216429913 216430156 -26234197 - MIR SINE MIR 0 262 16 2280 150 50 14 chr1 216430368 216430787 -26233566 - LTR24 LTR ERV1 0 467 34 1894 131 82 0 chr1 216430789 216431071 -26233282 + AluSx SINE Alu 3 307 -5 1160 117 105 0 chr1 216431075 216431246 -26233107 + AluJb SINE Alu 112 300 -12 22 35 0 0 chr1 216431258 216431287 -26233066 + AT_rich Low_complexity Low_complexity 1 29 0 275 27 0 0 chr1 216431295 216431332 -26233021 - LTR24 LTR ERV1 -421 46 10 261 373 59 53 chr1 216432361 216432817 -26231536 - L2 LINE L2 -1 3271 2813 917 196 5 26 chr1 216432868 216433057 -26231296 - MER5A DNA MER1_type -1 188 4 1793 190 122 91 chr1 216433472 216434289 -26230064 + LTR1B LTR ERV1 1 1020 0 2198 168 19 64 chr1 216434441 216434910 -26229443 - LTR32 LTR ERVL -5 466 19 333 255 20 20 chr1 216435249 216435351 -26229002 - MER5C DNA MER1_type -3 321 220 2088 141 64 2 chr1 216435351 216435756 -26228597 + L1MC3 LINE L1 7356 7785 0 228 187 159 19 chr1 216435756 216435863 -26228490 - MER5C DNA MER1_type -98 226 105 1941 121 4 11 chr1 216436456 216436736 -26227617 - AluSg SINE Alu -11 299 22 816 184 94 36 chr1 216438003 216438280 -26226073 + L1ME1 LINE L1 3759 4051 -2095 1904 164 35 16 chr1 216438280 216438653 -26225700 + MLT1B LTR MaLR 7 386 -4 4321 219 31 32 chr1 216438661 216439350 -26225003 + L1ME1 LINE L1 4067 4756 -1410 927 204 110 0 chr1 216439350 216439541 -26224812 + MER58C DNA MER1_type 1 212 -3 4321 219 31 32 chr1 216439541 216440957 -26223396 + L1ME1 LINE L1 4756 6161 -5 440 131 0 12 chr1 216443038 216443122 -26221231 + (GA)n Simple_repeat Simple_repeat 2 84 0 1870 252 98 28 chr1 216443417 216444256 -26220097 + L2 LINE L2 2308 3206 -107 349 291 69 42 chr1 216444524 216444713 -26219640 + MLT1J LTR MaLR 123 316 -195 296 211 35 52 chr1 216444714 216444862 -26219491 + MLT1J1 LTR MaLR 310 489 0 423 0 0 0 chr1 216445995 216446042 -26218311 + (TG)n Simple_repeat Simple_repeat 1 47 0 494 193 22 7 chr1 216447512 216447647 -26216706 - L1MA10 LINE L1 -2 6332 6196 234 361 95 25 chr1 216447680 216447838 -26216515 + MIR3 SINE MIR 34 202 -6 1223 243 27 24 chr1 216447999 216448333 -26216020 + MER45C DNA AcHobo 1 335 -618 523 310 41 0 chr1 216448403 216448574 -26215779 + MER45C DNA AcHobo 363 540 -413 247 146 0 0 chr1 216448622 216448663 -26215690 + MER45C DNA AcHobo 902 942 -11 2471 178 24 11 chr1 216449076 216449537 -26214816 - MLT1C LTR MaLR 0 467 1 207 274 20 0 chr1 216449921 216449972 -26214381 + (CA)n Simple_repeat Simple_repeat 2 53 0 2129 125 54 25 chr1 216450556 216450909 -26213444 + THE1B LTR MaLR 1 363 -1 206 290 0 0 chr1 216451090 216451152 -26213201 - MIR SINE MIR -68 194 133 886 153 0 31 chr1 216451164 216451327 -26213026 - MLT1C LTR MaLR -309 158 1 488 214 77 0 chr1 216451938 216452055 -26212298 - MLT1A2 LTR MaLR -16 374 249 1162 104 0 0 chr1 216452056 216452210 -26212143 - AluSg/x SINE Alu -12 298 145 817 201 29 10 chr1 216452222 216452431 -26211922 - MLT1A2 LTR MaLR -144 230 18 2068 186 17 12 chr1 216452443 216452856 -26211497 - MLT1A2-int LTR MaLR -6 1729 1315 2035 226 29 11 chr1 216453117 216453643 -26210710 - MLT1A2-int LTR MaLR -487 884 260 697 131 25 0 chr1 216453627 216453749 -26210604 - MLT1A2-int LTR MaLR -1246 125 1 * 349 127 0 32 chr1 216453749 216453812 -26210541 - MLT2D LTR ERVL 0 414 354 1874 204 79 31 chr1 216453944 216454401 -26209952 - MLT2B1 LTR ERVL -41 479 1 293 278 199 13 chr1 216454808 216454959 -26209394 - MIR SINE MIR -70 192 14 571 149 37 60 chr1 216457042 216457176 -26207177 + FLAM_A SINE Alu 1 131 -2 21 0 0 0 chr1 216457176 216457197 -26207156 + AT_rich Low_complexity Low_complexity 1 21 0 383 323 64 11 chr1 216458425 216458691 -26205662 + MLT1J LTR MaLR 230 509 -2 461 248 99 28 chr1 216458796 216458937 -26205416 + L2 LINE L2 3161 3311 -2 1403 224 55 38 chr1 216459340 216459791 -26204562 + MLT1C LTR MaLR 9 467 0 492 238 45 50 chr1 216459889 216460091 -26204262 - L1MCc LINE L1 -6192 231 31 542 53 0 0 chr1 216460128 216460204 -26204149 + L1PA13 LINE L1 5276 5351 -823 6652 27 0 0 chr1 216460226 216461036 -26203317 - L1PA3 LINE L1 -4 6151 5342 4939 125 15 1 chr1 216461036 216461852 -26202501 + L1PA13 LINE L1 5337 6163 0 356 309 20 40 chr1 216461994 216462143 -26202210 - L3 LINE CR1 -1026 551 406 444 95 0 0 chr1 216462154 216462228 -26202125 - L1PB1 LINE L1 -3 6148 6075 213 288 50 25 chr1 216462336 216462416 -26201937 - L3 LINE CR1 -1207 370 289 1421 211 124 22 chr1 216465409 216465779 -26198574 - LTR26E LTR ERV1 0 622 215 201 318 63 32 chr1 216465936 216466062 -26198291 - MIR SINE MIR -108 154 25 326 343 43 19 chr1 216466185 216466392 -26197961 + L1ME LINE L1 5502 5713 -408 399 21 0 0 chr1 216468488 216468536 -26195817 + (TG)n Simple_repeat Simple_repeat 2 49 0 1921 148 46 38 chr1 216469227 216469599 -26194754 + THE1C LTR MaLR 1 375 0 474 155 124 0 chr1 216469602 216469731 -26194622 + L1MA7 LINE L1 6147 6291 0 29 47 0 0 chr1 216470144 216470187 -26194166 + AT_rich Low_complexity Low_complexity 1 43 0 2157 133 20 6 chr1 216470187 216470533 -26193820 - L1PB3 LINE L1 -2 6152 5802 663 201 6 28 chr1 216470569 216470748 -26193605 + L1P LINE L1 5168 5342 -804 649 72 0 10 chr1 216471214 216471311 -26193042 - L1MA2 LINE L1 0 6304 6209 345 149 0 0 chr1 216471388 216471455 -26192898 + (CA)n Simple_repeat Simple_repeat 2 68 0 2124 134 0 0 chr1 216472330 216472629 -26191724 - AluSx SINE Alu -13 299 1 288 0 0 0 chr1 216473487 216473519 -26190834 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 2994 55 0 0 chr1 216473523 216473889 -26190464 - L1PA6 LINE L1 -13 6141 5776 3858 58 18 0 chr1 216473889 216474590 -26189763 + L1PA6 LINE L1 5065 5774 -380 1976 229 6 2 chr1 216474964 216475476 -26188877 + L1 LINE L1 4384 4897 -1249 1177 105 13 0 chr1 216475480 216475633 -26188720 - AluSq SINE Alu -158 155 1 1262 104 11 0 chr1 216476955 216477138 -26187215 + L1PA13 LINE L1 5974 6158 -5 500 306 21 16 chr1 216478187 216478373 -26185980 - MER5A DNA MER1_type -2 187 1 292 88 35 0 chr1 216478916 216478973 -26185380 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 741 288 20 54 chr1 216484449 216484744 -26179609 + L1MCc LINE L1 784 1068 -5355 1217 221 30 3 chr1 216484844 216485147 -26179206 + L1MCc LINE L1 1106 1416 -5007 1273 220 35 48 chr1 216485158 216485197 -26179156 - MLT1A2 LTR MaLR 0 467 429 2157 112 0 0 chr1 216485197 216485474 -26178879 + AluSc SINE Alu 1 277 -32 198 71 0 0 chr1 216485474 216485502 -26178851 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1273 220 35 48 chr1 216485502 216485836 -26178517 - MLT1A2 LTR MaLR -36 431 4 950 278 66 61 chr1 216485839 216486912 -26177441 + L1MCc LINE L1 1434 2719 -4403 195 42 0 0 chr1 216486924 216486948 -26177405 + (TTCCC)n Simple_repeat Simple_repeat 1 24 0 1564 249 42 28 chr1 216487132 216487589 -26176764 - LTR40c LTR ERVL -2 463 1 39 38 0 0 chr1 216487764 216487817 -26176536 + AT_rich Low_complexity Low_complexity 1 53 0 729 268 14 36 chr1 216488179 216488399 -26175954 - MIR SINE MIR -3 259 45 302 342 67 42 chr1 216488527 216488767 -26175586 + LTR16C LTR ERVL 68 313 -178 4022 163 4 10 chr1 216488799 216489485 -26174868 + MER54B LTR ERVL 1 682 -111 286 281 45 0 chr1 216489533 216489672 -26174681 + LTR16C LTR ERVL 312 491 0 1495 393 47 28 chr1 216490214 216491349 -26173004 + HERV16 LTR ERVL 2000 2960 -2036 378 362 5 5 chr1 216491820 216492030 -26172323 + HERV16 LTR ERVL 3750 3959 -1695 350 64 0 22 chr1 216492031 216492089 -26172264 + THE1C LTR MaLR 1 56 -299 243 130 74 0 chr1 216492090 216492144 -26172209 + L1M4c LINE L1 916 973 -5411 1595 142 62 32 chr1 216492146 216492484 -26171869 + THE1C LTR MaLR 28 375 0 1144 354 53 33 chr1 216492665 216493112 -26171241 + HERV16 LTR ERVL 4154 4628 -1026 2224 114 3 7 chr1 216493112 216493419 -26170934 + AluSx SINE Alu 1 306 -6 1144 354 53 33 chr1 216493419 216493827 -26170526 + HERV16 LTR ERVL 4628 5026 -628 627 332 34 7 chr1 216494448 216494743 -26169610 + LTR16C LTR ERVL 136 438 -53 1908 154 4 0 chr1 216494946 216495226 -26169127 - AluJb SINE Alu -31 281 1 2444 167 57 4 chr1 216495396 216495850 -26168503 + L1M4c LINE L1 19 496 -5888 * 7309 168 23 23 chr1 216495848 216497214 -26167139 + L1M4c LINE L1 892 2257 -4125 1538 214 3 16 chr1 216497214 216497517 -26166836 + AluJo SINE Alu 1 299 -13 7309 168 23 23 chr1 216497517 216497810 -26166543 + L1M4c LINE L1 2257 2549 -3833 448 125 88 125 chr1 216497810 216497889 -26166464 + MSTC LTR MaLR 1 74 -354 6246 98 8 12 chr1 216497889 216499195 -26165158 + L1PA11 LINE L1 4388 5684 -490 2198 120 0 3 chr1 216499195 216499496 -26164857 + AluSq SINE Alu 1 300 -13 6246 98 8 12 chr1 216499496 216499985 -26164368 + L1PA11 LINE L1 5684 6174 0 448 125 88 125 chr1 216499985 216500041 -26164312 + MSTC LTR MaLR 74 131 -297 714 171 66 0 chr1 216500041 216500193 -26164160 + L1MA6 LINE L1 6133 6294 -6 331 268 146 52 chr1 216500200 216500413 -26163940 + MLT1G LTR MaLR 160 392 -198 3303 138 53 40 chr1 216500537 216500758 -26163595 + L1MB3 LINE L1 5152 5369 -814 1959 156 120 28 chr1 216500758 216501150 -26163203 + MSTA LTR MaLR 1 428 0 3303 138 53 40 chr1 216501150 216501318 -26163035 + L1MB3 LINE L1 5369 5533 -650 1909 145 46 38 chr1 216501318 216501690 -26162663 - THE1C LTR MaLR 0 375 1 3303 138 53 40 chr1 216501690 216502068 -26162285 + L1MB3 LINE L1 5533 5924 -259 2251 114 0 0 chr1 216502073 216502363 -26161990 - AluSg SINE Alu -20 290 1 1113 161 23 0 chr1 216502484 216502702 -26161651 + L1MB3 LINE L1 5961 6183 0 1352 208 10 34 chr1 216504344 216504637 -26159716 + AluJo SINE Alu 3 288 -24 1889 114 0 0 chr1 216504650 216504896 -26159457 + AluSc SINE Alu 8 253 -56 221 280 13 13 chr1 216505624 216505699 -26158654 + (CATA)n Simple_repeat Simple_repeat 1 75 0 370 261 121 14 chr1 216505848 216506055 -26158298 - L1ME LINE L1 -320 5801 5573 1868 158 10 20 chr1 216506406 216506709 -26157644 + AluJo SINE Alu 1 300 -12 1102 162 13 77 chr1 216506799 216507033 -26157320 + MER20 DNA MER1_type 1 219 0 446 233 220 13 chr1 216508437 216508587 -26155766 + MER5A DNA MER1_type 9 189 0 962 189 37 37 chr1 216509393 216509610 -26154743 + MER20 DNA MER1_type 1 217 -2 292 331 25 6 chr1 216509662 216509822 -26154531 + LTR33 LTR ERVL 359 521 0 1399 101 0 0 chr1 216510129 216510317 -26154036 - AluSg/x SINE Alu -3 309 122 510 203 31 0 chr1 216510417 216510545 -26153808 + MER69 DNA AcHobo 579 710 -1816 261 254 15 30 chr1 216510557 216510624 -26153729 - MER91A DNA MER1_type -130 66 1 2144 111 14 7 chr1 216510976 216511273 -26153080 + AluSc SINE Alu 1 299 -10 1946 192 8 6 chr1 216512799 216513163 -26151190 - MLT1A1 LTR MaLR 0 365 1 21 57 0 0 chr1 216513820 216513855 -26150498 + AT_rich Low_complexity Low_complexity 1 35 0 288 301 62 35 chr1 216514040 216514153 -26150200 - L2 LINE L2 -18 3295 3180 226 203 102 0 chr1 216514396 216514455 -26149898 - L1MA8 LINE L1 -215 6076 6012 206 278 14 42 chr1 216514694 216514766 -26149587 + L2 LINE L2 3180 3249 -64 2170 134 3 3 chr1 216516458 216516765 -26147588 + AluJb SINE Alu 1 307 -5 680 211 0 8 chr1 216517031 216517159 -26147194 + FLAM_A SINE Alu 1 127 -6 364 275 137 80 chr1 216517772 216518034 -26146319 - L3 LINE CR1 -878 699 423 248 321 113 0 chr1 216518321 216518427 -26145926 - L3 LINE CR1 -1189 388 271 502 235 34 0 chr1 216518896 216519015 -26145338 - L2 LINE L2 -2 3311 3189 463 340 34 79 chr1 216519063 216519419 -26144934 + L2 LINE L2 2931 3270 -2 199 241 54 80 chr1 216520060 216520172 -26144181 - MIR SINE MIR -51 211 103 353 254 84 58 chr1 216520920 216521195 -26143158 + L1ME3A LINE L1 857 1138 -5258 831 301 62 11 chr1 216521279 216521813 -26142540 + L1ME3A LINE L1 1257 1817 -4579 296 286 73 56 chr1 216521822 216521875 -26142478 + L1ME3A LINE L1 1869 1920 -4476 219 88 0 0 chr1 216521875 216521909 -26142444 + (ATTG)n Simple_repeat Simple_repeat 4 37 0 296 286 73 56 chr1 216521909 216522089 -26142264 + L1ME3A LINE L1 1920 2106 -4290 1562 259 79 70 chr1 216522144 216522823 -26141530 + L1ME3A LINE L1 5341 6031 -208 2958 68 3 0 chr1 216522823 216523203 -26141150 + L1PA5 LINE L1 5774 6154 0 1562 259 79 70 chr1 216523203 216523400 -26140953 + L1ME3A LINE L1 6031 6225 -14 379 210 0 0 chr1 216523436 216523517 -26140836 + L1ME LINE L1 5583 5663 -458 27 29 0 0 chr1 216523901 216523935 -26140418 + AT_rich Low_complexity Low_complexity 1 34 0 254 320 88 16 chr1 216524698 216524823 -26139530 - L2 LINE L2 0 3313 3180 2390 179 98 60 chr1 216524906 216525536 -26138817 - MLT1E1 LTR MaLR 0 654 1 2168 101 44 0 chr1 216525536 216525834 -26138519 + AluY SINE Alu 1 311 0 261 184 20 0 chr1 216526156 216526205 -26138148 - L2 LINE L2 -10 3303 3254 200 342 146 6 chr1 216526416 216526574 -26137779 + L2 LINE L2 2897 3076 -196 624 326 118 40 chr1 216526626 216527209 -26137144 - L2 LINE L2 -955 2359 1731 180 222 0 0 chr1 216527285 216527321 -26137032 - MIR3 SINE MIR -18 190 155 540 291 46 6 chr1 216527472 216527647 -26136706 + L2 LINE L2 3130 3311 -2 230 233 83 0 chr1 216527652 216527712 -26136641 - MIR SINE MIR -115 147 83 626 285 69 37 chr1 216527912 216528158 -26136195 - MIR SINE MIR -6 256 3 225 220 17 0 chr1 216528406 216528465 -26135888 + (TA)n Simple_repeat Simple_repeat 1 60 0 183 308 113 44 chr1 216528795 216528954 -26135399 + MIR3 SINE MIR 37 206 -2 489 311 41 69 chr1 216529025 216529414 -26134939 + L2 LINE L2 2252 2629 -685 817 166 22 0 chr1 216529539 216529720 -26134633 - L1 LINE L1 -757 5389 5205 * 906 234 35 28 chr1 216529719 216530005 -26134348 + L1MA9 LINE L1 5987 6274 -38 252 260 167 49 chr1 216530057 216530303 -26134050 - MLT1L LTR MaLR -121 494 220 3091 222 31 66 chr1 216530410 216531194 -26133159 + MER21B LTR ERV1 1 756 -107 552 258 104 25 chr1 216531899 216532062 -26132291 - MIR SINE MIR -3 259 84 1830 138 28 68 chr1 216533244 216533453 -26130900 - AluSq SINE Alu 0 313 120 1858 89 0 4 chr1 216533453 216533689 -26130664 + AluY SINE Alu 61 295 -16 1830 138 28 68 chr1 216533689 216533805 -26130548 - AluSq SINE Alu -193 120 1 181 286 191 12 chr1 216534257 216534341 -26130012 - MIR3 SINE MIR 0 208 110 598 203 40 34 chr1 216585846 216585994 -26078359 - L1ME3 LINE L1 -2 6160 6012 300 27 0 0 chr1 216586000 216586037 -26078316 + (TC)n Simple_repeat Simple_repeat 1 37 0 516 32 0 0 chr1 216586192 216586254 -26078099 + (CA)n Simple_repeat Simple_repeat 2 63 0 1104 190 25 44 chr1 216586272 216586593 -26077760 - L1ME3 LINE L1 -200 5964 5647 632 226 73 53 chr1 216586595 216586793 -26077560 - L1ME3 LINE L1 -1746 4400 4192 1465 53 0 5 chr1 216586793 216586980 -26077373 - AluY SINE Alu -5 306 121 632 226 73 53 chr1 216586980 216587082 -26077271 - L1ME3 LINE L1 -1954 4192 4094 2334 193 90 45 chr1 216588133 216588658 -26075695 - MER74A LTR ERVL 0 558 7 9231 40 11 0 chr1 216588658 216590523 -26073830 - L1PA5 LINE L1 -5 6149 4255 1001 275 90 51 chr1 216590630 216591161 -26073192 - MLT1K LTR MaLR -10 578 27 25 0 0 0 chr1 216591457 216591482 -26072871 + AT_rich Low_complexity Low_complexity 1 25 0 1091 171 11 0 chr1 216591958 216592145 -26072208 - MER5A DNA MER1_type 0 189 1 2245 142 100 2 chr1 216593648 216594079 -26070274 - L1MA7 LINE L1 0 6291 5819 444 271 402 8 chr1 216594142 216594408 -26069945 + L2 LINE L2 2943 3313 0 215 250 12 75 chr1 216594611 216594691 -26069662 + L2 LINE L2 3180 3254 -18 221 245 161 77 chr1 216596943 216597086 -26067267 + MER5B DNA MER1_type 1 155 -23 440 322 50 47 chr1 216597344 216597639 -26066714 + L3 LINE CR1 960 1258 -319 1899 154 6 3 chr1 216597639 216597950 -26066403 + AluSx SINE Alu 1 312 0 440 322 50 47 chr1 216597950 216598014 -26066339 + L3 LINE CR1 1258 1320 -257 380 278 52 0 chr1 216598031 216598146 -26066207 - MIR SINE MIR -38 224 104 689 233 0 0 chr1 216598146 216598275 -26066078 + FLAM_A SINE Alu 1 129 -4 21 0 0 0 chr1 216598275 216598296 -26066057 + AT_rich Low_complexity Low_complexity 1 21 0 572 246 107 67 chr1 216598451 216598850 -26065503 + LTR16A1 LTR ERVL 1 443 -14 1310 161 99 8 chr1 216598959 216599201 -26065152 - MSTB LTR MaLR -162 264 1 882 241 62 9 chr1 216599609 216599833 -26064520 + LTR16A LTR ERVL 1 236 -214 * 1463 233 143 43 chr1 216599814 216600324 -26064029 + MLT1E LTR MaLR 33 593 0 689 281 0 50 chr1 216600324 216600542 -26063811 + LTR16A LTR ERVL 239 445 -5 11979 31 0 0 chr1 216601039 216603211 -26061142 + L1PA3 LINE L1 3983 6153 -2 654 216 94 11 chr1 216603420 216603601 -26060752 + L2 LINE L2 3118 3313 0 660 277 7 6 chr1 216603766 216603952 -26060401 - MIR SINE MIR -65 143 4 448 280 17 8 chr1 216604034 216604152 -26060201 + L2 LINE L2 3194 3312 -1 224 310 190 10 chr1 216604125 216604225 -26060128 - L2 LINE L2 -10 3262 3145 * 795 203 93 89 chr1 216604263 216604499 -26059854 - MIR SINE MIR -1 261 25 188 191 24 0 chr1 216606195 216606237 -26058116 - MIR3 SINE MIR -154 54 12 248 186 17 0 chr1 216606371 216606430 -26057923 + (CA)n Simple_repeat Simple_repeat 1 60 0 357 313 31 0 chr1 216607053 216607181 -26057172 + MIR SINE MIR 131 262 0 283 192 19 0 chr1 216607656 216607708 -26056645 + MER105 DNA DNA 3 55 -149 790 147 44 137 chr1 216608070 216608274 -26056079 + MER105 DNA DNA 3 187 -17 346 271 56 42 chr1 216608274 216608418 -26055935 - MIR SINE MIR -95 167 22 344 222 25 0 chr1 216608484 216608565 -26055788 - MIR3 SINE MIR -3 205 123 610 193 13 73 chr1 216608745 216608895 -26055458 + MIR3 SINE MIR 53 193 -15 2625 176 55 17 chr1 216609254 216609731 -26054622 - LTR42 LTR ERVL 0 495 1 30 77 0 0 chr1 216610023 216610088 -26054265 + AT_rich Low_complexity Low_complexity 1 65 0 200 170 0 38 chr1 216610481 216610534 -26053819 + (TA)n Simple_repeat Simple_repeat 2 52 0 198 267 0 0 chr1 216610824 216610869 -26053484 - MIR SINE MIR -114 148 104 531 270 75 0 chr1 216611438 216611597 -26052756 + MER117 DNA MER1_type 27 197 0 761 210 96 0 chr1 216611675 216611894 -26052459 - Charlie2 DNA MER1_type -6 2856 2617 2268 101 0 0 chr1 216612793 216613125 -26051228 + AluSc SINE Alu 1 332 0 355 264 24 120 chr1 216613216 216613424 -26050929 - MER5A DNA MER1_type 0 189 2 183 224 82 0 chr1 216614339 216614388 -26049965 + MIR3 SINE MIR 111 163 -45 755 181 8 0 chr1 216614499 216614626 -26049727 + FLAM_C SINE Alu 2 129 -14 321 283 0 75 chr1 216614637 216614757 -26049596 + MIR SINE MIR 152 262 0 350 274 186 8 chr1 216614863 216614987 -26049366 + MIR SINE MIR 28 173 -89 * 424 246 16 66 chr1 216614984 216615106 -26049247 - L2 LINE L2 0 3313 3198 257 281 0 0 chr1 216615123 216615180 -26049173 + MIR SINE MIR 200 256 -6 287 162 88 29 chr1 216615199 216615267 -26049086 + L2 LINE L2 3242 3313 0 21 0 0 0 chr1 216615298 216615319 -26049034 + AT_rich Low_complexity Low_complexity 1 21 0 836 136 40 45 chr1 216615905 216616072 -26048281 - AluSg/x SINE Alu -9 303 136 2008 122 27 0 chr1 216616072 216616366 -26047987 - AluSx SINE Alu -10 302 1 236 323 32 11 chr1 216616594 216616687 -26047666 + MIR3 SINE MIR 3 97 -111 769 151 16 24 chr1 216618078 216618204 -26046149 - AluJb SINE Alu -182 130 6 1841 124 0 47 chr1 216619294 216619620 -26044733 + AluSx SINE Alu 1 312 0 390 273 8 68 chr1 216619638 216619770 -26044583 - L2 LINE L2 -22 3291 3168 304 297 180 16 chr1 216619804 216619932 -26044421 + MIR SINE MIR 14 162 -100 256 284 0 15 chr1 216621656 216621723 -26042630 + C-rich Low_complexity Low_complexity 4 69 0 1382 95 0 0 chr1 216622333 216622522 -26041831 + AluSg/x SINE Alu 107 295 -14 1282 142 40 46 chr1 216623216 216623518 -26040835 + AluY SINE Alu 1 300 -11 605 165 83 0 chr1 216623646 216623755 -26040598 + MLT1D LTR MaLR 1 118 -387 903 203 90 14 chr1 216623863 216624075 -26040278 + MLT1D LTR MaLR 276 503 -2 1967 144 0 3 chr1 216624106 216624412 -26039941 + AluSx SINE Alu 1 305 -7 1728 160 14 0 chr1 216624589 216624883 -26039470 - AluSx SINE Alu -13 299 2 1938 103 14 3 chr1 216625672 216625984 -26038369 - AluSq SINE Alu 0 315 1 304 118 0 0 chr1 216626832 216626883 -26037470 - AluSp/q SINE Alu -2 301 251 199 239 30 15 chr1 216627153 216627220 -26037133 - MIR SINE MIR -56 152 85 243 281 16 0 chr1 216627569 216627633 -26036720 - MIR SINE MIR -177 85 21 1699 117 0 16 chr1 216629120 216629256 -26035097 + AluSx SINE Alu 1 133 -179 2125 113 3 0 chr1 216629256 216629557 -26034796 + AluSp SINE Alu 1 302 -11 1699 117 0 16 chr1 216629557 216629669 -26034684 + AluSx SINE Alu 133 245 -67 2211 187 68 118 chr1 216630132 216630896 -26033457 + LTR8A LTR ERV1 1 726 -1 21 57 0 0 chr1 216631838 216631873 -26032480 + AT_rich Low_complexity Low_complexity 1 35 0 337 327 36 36 chr1 216632070 216632235 -26032118 + L2 LINE L2 3149 3313 0 222 174 0 0 chr1 216632237 216632283 -26032070 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 203 329 197 0 chr1 216632772 216632909 -26031444 + MIR SINE MIR 1 164 -98 186 245 19 38 chr1 216632892 216632945 -26031408 + L2 LINE L2 3196 3247 -25 * 248 231 0 0 chr1 216632947 216633012 -26031341 + (ATG)n Simple_repeat Simple_repeat 3 67 0 1028 195 55 30 chr1 216633289 216633525 -26030828 - MIR SINE MIR -13 249 8 650 263 57 5 chr1 216633759 216633953 -26030400 + MIR SINE MIR 48 251 -11 1945 149 0 7 chr1 216634591 216634899 -26029454 + AluSx SINE Alu 7 312 0 2391 98 3 0 chr1 216635292 216635597 -26028756 + AluSp SINE Alu 1 306 -7 246 209 152 48 chr1 216636069 216636174 -26028179 + L2 LINE L2 3145 3260 -12 2283 107 31 78 chr1 216636496 216636878 -26027475 + THE1B LTR MaLR 1 364 0 200 283 98 54 chr1 216636992 216637176 -26027177 + MIR SINE MIR 1 192 -70 2099 116 7 20 chr1 216637193 216637494 -26026859 + AluSx SINE Alu 1 297 -15 1771 180 7 3 chr1 216637689 216637984 -26026369 - AluJo SINE Alu -10 302 7 285 244 0 0 chr1 216639591 216639677 -26024676 + T-rich Low_complexity Low_complexity 1 86 0 344 305 0 60 chr1 216640290 216640334 -26024019 + MIR SINE MIR 120 165 -97 2027 106 51 0 chr1 216640334 216640627 -26023726 + AluSq SINE Alu 1 308 -5 344 305 0 60 chr1 216640627 216640733 -26023620 + MIR SINE MIR 165 261 -1 2078 113 3 10 chr1 216641205 216641498 -26022855 + AluSx SINE Alu 6 296 -16 565 237 26 52 chr1 216641549 216641743 -26022610 + MIR SINE MIR 74 262 0 238 250 97 14 chr1 216641848 216641920 -26022433 - MER5B DNA MER1_type -12 166 89 2281 123 0 0 chr1 216641955 216642263 -26022090 + AluSx SINE Alu 5 312 0 1379 276 60 11 chr1 216642460 216642910 -26021443 + L1MEc LINE L1 62 533 -5863 3147 256 86 16 chr1 216642938 216643267 -26021086 + L1MEc LINE L1 611 916 -5480 1722 40 5 0 chr1 216643267 216643467 -26020886 + AluY SINE Alu 103 303 -8 3147 256 86 16 chr1 216643467 216643538 -26020815 + L1MEc LINE L1 916 981 -5415 216 0 0 0 chr1 216643538 216643562 -26020791 + (CA)n Simple_repeat Simple_repeat 2 25 0 3147 256 86 16 chr1 216643562 216644271 -26020082 + L1MEc LINE L1 981 1798 -4598 1318 223 47 71 chr1 216644273 216644654 -26019699 - MLT1D LTR MaLR -9 496 125 4283 243 34 18 chr1 216644654 216645639 -26018714 + L1MEc LINE L1 2840 3849 -2366 1561 153 73 28 chr1 216645639 216645926 -26018427 + AluJo SINE Alu 1 300 -12 4283 243 34 18 chr1 216645926 216646188 -26018165 + L1MEc LINE L1 3849 4106 -2109 706 95 42 0 chr1 216646442 216646537 -26017816 - L1PA8 LINE L1 -6 6166 6068 14149 68 14 1 chr1 216646539 216648415 -26015938 + L1P LINE L1 2086 3987 -2159 20619 68 10 0 chr1 216648520 216651210 -26013143 + L1P LINE L1 2559 5276 -870 846 185 0 0 chr1 216651404 216651534 -26012819 + FLAM_C SINE Alu 1 130 -3 728 44 0 0 chr1 216651831 216651921 -26012432 - L1PA7 LINE L1 0 6154 6065 2376 85 0 10 chr1 216652014 216652321 -26012032 + AluSc SINE Alu 1 304 -5 194 287 69 81 chr1 216652489 216652576 -26011777 - L2 LINE L2 -18 3295 3210 2543 179 8 18 chr1 216652971 216653468 -26010885 - L1MA9 LINE L1 -38 6274 5783 1064 227 18 14 chr1 216653444 216653721 -26010632 + L1MEc LINE L1 4677 4954 -1261 * 317 297 79 30 chr1 216653918 216654019 -26010334 - L2 LINE L2 0 3272 3167 383 285 79 114 chr1 216654115 216654483 -26009870 + MLT1I LTR MaLR 55 409 0 198 0 0 0 chr1 216655235 216655257 -26009096 + (T)n Simple_repeat Simple_repeat 1 22 0 243 336 0 90 chr1 216656466 216656600 -26007753 + L3 LINE CR1 1384 1505 -72 1664 259 135 61 chr1 216657645 216658332 -26006021 - MER21B LTR ERV1 -125 738 1 433 235 20 0 chr1 216658611 216658709 -26005644 - MIR SINE MIR 0 262 163 283 189 40 14 chr1 216658710 216658784 -26005569 - L1MC/D LINE L1 -2037 5771 5696 192 275 72 65 chr1 216659506 216659644 -26004709 - MIR3 SINE MIR -62 146 8 483 273 38 34 chr1 216660188 216660394 -26003959 + MIR3 SINE MIR 4 205 -17 195 42 0 0 chr1 216660439 216660463 -26003890 + (ATG)n Simple_repeat Simple_repeat 1 24 0 180 111 0 0 chr1 216661652 216661679 -26002674 + (A)n Simple_repeat Simple_repeat 1 27 0 490 323 32 51 chr1 216662633 216662882 -26001471 - MIR SINE MIR -12 250 1 25 31 0 0 chr1 216663458 216663490 -26000863 + AT_rich Low_complexity Low_complexity 1 32 0 282 321 69 8 chr1 216663665 216663796 -26000557 + L2 LINE L2 2950 3088 -184 3762 123 6 4 chr1 216663986 216664505 -25999848 + MER1A DNA MER1_type 1 520 -9 218 100 0 0 chr1 216664704 216664734 -25999619 + (T)n Simple_repeat Simple_repeat 1 30 0 1439 194 63 83 chr1 216665204 216665601 -25998752 - MLT1B LTR MaLR -1 389 1 280 266 81 32 chr1 216665929 216666053 -25998300 - L3 LINE CR1 -5 1572 1443 201 74 0 0 chr1 216666401 216666428 -25997925 + (CA)n Simple_repeat Simple_repeat 2 28 0 366 321 0 9 chr1 216667301 216667410 -25996943 - MIR SINE MIR -63 145 38 5798 200 24 59 chr1 216667410 216668856 -25995497 + L1PB3 LINE L1 1774 3269 -2877 2144 130 0 0 chr1 216668856 216669148 -25995205 + AluSx SINE Alu 3 294 -18 5798 200 24 59 chr1 216669148 216669353 -25995000 + L1PB3 LINE L1 3269 3366 -2780 1974 158 0 10 chr1 216669353 216669663 -25994690 + AluSg SINE Alu 4 310 0 5798 200 24 59 chr1 216669663 216669843 -25994510 + L1PB3 LINE L1 3366 3551 -2595 4529 141 22 10 chr1 216669842 216671137 -25993216 + L1PB3 LINE L1 4479 5799 -355 * 288 0 0 0 chr1 216671137 216671169 -25993184 + (TA)n Simple_repeat Simple_repeat 1 32 0 4529 141 22 10 chr1 216671169 216671290 -25993063 + L1PB3 LINE L1 5799 5917 -237 1280 135 52 26 chr1 216671309 216671467 -25992886 + AluSx SINE Alu 60 227 -85 2148 148 26 32 chr1 216671467 216671844 -25992509 - THE1C LTR MaLR 0 375 1 1280 135 52 26 chr1 216671844 216671914 -25992439 + AluSx SINE Alu 227 294 -18 830 157 74 42 chr1 216672134 216672351 -25992002 - MER33 DNA MER1_type 0 324 101 386 215 7 4 chr1 216672344 216672441 -25991912 - MER33 DNA MER1_type -259 65 1 * 1594 203 0 3 chr1 216672742 216673032 -25991321 + AluJb SINE Alu 1 289 -23 2519 62 0 10 chr1 216673041 216673349 -25991004 + AluY SINE Alu 1 305 -6 1749 180 3 58 chr1 216675149 216675511 -25988842 - MLT1A1 LTR MaLR 0 365 24 1378 233 9 69 chr1 216676699 216677120 -25987233 - MLT2C1 LTR ERVL 0 397 2 233 300 191 0 chr1 216677133 216677243 -25987110 - MIR SINE MIR 0 262 132 1632 174 6 44 chr1 216677307 216677623 -25986730 - AluJb SINE Alu -8 304 1 734 164 16 160 chr1 216677846 216678102 -25986251 - MER20 DNA MER1_type 0 219 1 2129 94 0 18 chr1 216678508 216678814 -25985539 + AluSx SINE Alu 11 311 0 199 156 0 0 chr1 216678824 216678856 -25985497 - L2 LINE L2 -21 3292 3261 800 178 0 0 chr1 216679152 216679270 -25985083 + FLAM_C SINE Alu 2 119 -24 229 65 0 0 chr1 216679277 216679323 -25985030 - LTR66 LTR ERVL -171 439 394 202 137 0 39 chr1 216679328 216679379 -25984974 + (TA)n Simple_repeat Simple_repeat 2 50 0 238 288 56 116 chr1 216680285 216680552 -25983801 + MIR SINE MIR 6 256 -6 185 273 0 0 chr1 216683596 216683640 -25980713 + L2 LINE L2 2934 2977 -337 412 130 0 0 chr1 216684493 216684562 -25979791 - L1 LINE L1 -1419 4727 4659 569 323 33 21 chr1 216684944 216685177 -25979176 + MIR SINE MIR 12 252 -10 641 188 0 0 chr1 216685232 216685349 -25979004 + MER103 DNA DNA 1 117 -49 180 0 0 0 chr1 216685894 216685914 -25978439 + (A)n Simple_repeat Simple_repeat 1 20 0 2289 165 26 9 chr1 216686992 216687411 -25976942 - MSTB LTR MaLR 0 426 1 661 257 58 10 chr1 216688444 216688650 -25975703 + MIR SINE MIR 46 261 -1 209 125 0 0 chr1 216688712 216688744 -25975609 - L2 LINE L2 0 3272 3241 193 356 87 0 chr1 216688911 216689015 -25975338 + L2 LINE L2 3200 3312 -1 869 153 0 68 chr1 216689709 216689872 -25974481 - FRAM SINE Alu -5 171 20 1740 160 19 35 chr1 216690440 216690752 -25973601 - AluJo SINE Alu -4 308 2 2436 103 0 0 chr1 216691333 216691635 -25972718 - AluSx SINE Alu -10 302 1 438 286 124 24 chr1 216691830 216692040 -25972313 - L2 LINE L2 -2 3311 3081 843 295 116 54 chr1 216692069 216692227 -25972126 - L2 LINE L2 -1076 2238 2091 2378 95 3 19 chr1 216692227 216692544 -25971809 + AluSx SINE Alu 1 312 0 843 295 116 54 chr1 216692544 216693066 -25971287 - L2 LINE L2 -1223 2091 1516 631 131 84 0 chr1 216693243 216693350 -25971003 + AluSg/x SINE Alu 190 305 -7 374 232 119 8 chr1 216693655 216693820 -25970533 - MLT1J1 LTR MaLR -198 248 25 205 302 155 17 chr1 216694438 216694554 -25969799 + L2 LINE L2 3124 3255 -17 329 313 10 0 chr1 216694666 216694765 -25969588 + MIR SINE MIR 150 249 -13 203 306 65 46 chr1 216695575 216695683 -25968670 + MIR SINE MIR 116 225 -37 263 304 51 0 chr1 216695996 216696075 -25968278 - MIR SINE MIR -66 142 60 760 192 54 85 chr1 216697545 216697769 -25966584 - MER20 DNA MER1_type 0 219 3 398 299 57 57 chr1 216697892 216698103 -25966250 - MIR SINE MIR -38 224 14 192 318 0 71 chr1 216698310 216698395 -25965958 + MIR SINE MIR 66 144 -64 565 217 50 78 chr1 216698410 216698463 -25965890 + MER5B DNA MER1_type 1 54 -124 2362 124 83 10 chr1 216698463 216698858 -25965495 + MSTA LTR MaLR 5 428 0 9376 163 25 2 chr1 216698858 216700472 -25963881 + MSTA-int LTR MaLR 1 1651 0 2528 120 62 5 chr1 216700474 216700875 -25963478 + MSTA LTR MaLR 3 426 -2 565 217 50 78 chr1 216700875 216700997 -25963356 + MER5B DNA MER1_type 54 175 -3 295 213 25 125 chr1 216701625 216701785 -25962568 - MIR SINE MIR 0 262 119 217 312 13 13 chr1 216701849 216701926 -25962427 + L2 LINE L2 3134 3210 -62 216 0 0 0 chr1 216702295 216702319 -25962034 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2286 128 3 0 chr1 216702436 216702774 -25961579 + AluSq SINE Alu 1 339 0 25 0 0 0 chr1 216702973 216702998 -25961355 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr1 216703240 216703264 -25961089 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr1 216703643 216703667 -25960686 + AT_rich Low_complexity Low_complexity 1 24 0 459 0 0 0 chr1 216703667 216703718 -25960635 + (A)n Simple_repeat Simple_repeat 1 51 0 1084 91 70 32 chr1 216703932 216703974 -25960379 + L1MA4 LINE L1 5972 6011 -289 2205 140 5 31 chr1 216703974 216704359 -25959994 + THE1C LTR MaLR 1 375 0 1084 91 70 32 chr1 216704359 216704503 -25959850 + L1MA4 LINE L1 6011 6165 -135 198 225 0 0 chr1 216704565 216704605 -25959748 + MIR3 SINE MIR 154 193 -15 2044 151 5 40 chr1 216705411 216705789 -25958564 + MLT1B LTR MaLR 26 390 0 231 279 0 15 chr1 216705973 216706041 -25958312 - L2 LINE L2 -527 2787 2721 680 256 113 31 chr1 216706252 216706545 -25957808 - L2 LINE L2 -2 3311 2995 2308 116 0 3 chr1 216706701 216707011 -25957342 + AluSc SINE Alu 1 309 0 581 53 0 0 chr1 216707531 216707606 -25956747 + tRNA-Thr-ACA tRNA tRNA 1 75 -1 1020 179 30 68 chr1 216708426 216708722 -25955631 + MER33 DNA MER1_type 17 301 -23 183 250 83 60 chr1 216708844 216708928 -25955425 + L2 LINE L2 3187 3272 0 2055 138 7 3 chr1 216709001 216709299 -25955054 - AluSx SINE Alu -2 310 12 235 193 11 68 chr1 216713274 216713362 -25950991 + (CCCTG)n Simple_repeat Simple_repeat 3 85 0 2231 116 0 0 chr1 216713599 216713902 -25950451 - AluSg SINE Alu -7 303 1 2430 138 64 19 chr1 216719690 216720110 -25944243 - MER1A DNA MER1_type -90 439 1 380 196 0 135 chr1 216720381 216720529 -25943824 - LTR41 LTR ERVL -6 767 640 1507 191 44 14 chr1 216720532 216720825 -25943528 + AluJb SINE Alu 1 302 -10 277 244 12 24 chr1 216720950 216721032 -25943321 + L1ME LINE L1 5483 5563 -558 470 213 7 71 chr1 216721032 216721173 -25943180 - AluJo SINE Alu -170 142 11 1678 183 0 13 chr1 216721411 216721711 -25942642 - AluJo SINE Alu -16 296 1 389 216 39 49 chr1 216721822 216721924 -25942429 + MER8 DNA MER2_type 3 103 -136 1104 185 0 5 chr1 216721924 216722113 -25942240 + AluJb SINE Alu 117 304 -8 1391 198 8 8 chr1 216722708 216722976 -25941377 + AluJo SINE Alu 40 307 -5 21 57 0 0 chr1 216723200 216723235 -25941118 + AT_rich Low_complexity Low_complexity 1 35 0 2058 132 3 7 chr1 216723257 216723552 -25940801 - AluSq SINE Alu -15 298 5 1369 231 10 10 chr1 216723696 216724008 -25940345 - AluJo SINE Alu 0 312 1 556 224 0 0 chr1 216724032 216724148 -25940205 - FLAM_C SINE Alu -19 124 9 1138 231 94 78 chr1 216724254 216724895 -25939458 + L2 LINE L2 2458 3100 -213 1774 178 23 13 chr1 216724896 216725070 -25939283 - AluJo SINE Alu 0 312 132 2287 114 3 0 chr1 216725070 216725376 -25938977 - AluSq SINE Alu -6 307 1 1774 178 23 13 chr1 216725376 216725510 -25938843 - AluJo SINE Alu -180 132 1 1526 173 25 72 chr1 216725513 216725872 -25938481 - MLT1D LTR MaLR -2 503 162 600 235 0 7 chr1 216725872 216726008 -25938345 + FLAM_C SINE Alu 2 136 -7 662 217 0 0 chr1 216726013 216726133 -25938220 + FLAM_A SINE Alu 1 120 -13 1185 177 3 118 chr1 216726133 216726421 -25937932 + AluJb SINE Alu 45 299 -13 317 268 0 0 chr1 216726421 216726492 -25937861 + MER21B LTR ERV1 16 86 -777 2466 245 47 37 chr1 216726518 216726927 -25937426 + MER21B LTR ERV1 19 423 -440 1599 189 3 49 chr1 216726927 216727234 -25937119 - AluJb SINE Alu -18 294 2 2466 245 47 37 chr1 216727234 216727304 -25937049 + MER21B LTR ERV1 423 491 -372 1703 205 0 3 chr1 216727304 216727607 -25936746 + AluJo SINE Alu 1 302 -10 2466 245 47 37 chr1 216727607 216727852 -25936501 + MER21B LTR ERV1 491 751 -112 296 353 41 0 chr1 216728015 216728137 -25936216 + MIR SINE MIR 73 199 -63 187 269 87 0 chr1 216728401 216728505 -25935848 + L2 LINE L2 2949 3061 -211 621 148 28 0 chr1 216728803 216728911 -25935442 - AluJb SINE Alu -8 304 194 676 197 0 0 chr1 216728952 216729069 -25935284 + FLAM_C SINE Alu 9 125 -18 1700 104 12 0 chr1 216729082 216729333 -25935020 - MER1A DNA MER1_type -39 490 237 6245 61 20 53 chr1 216729354 216730252 -25934101 + SVA Other Other 1 868 -518 1281 45 5 35 chr1 216730482 216730681 -25933672 + SVA Other Other 674 866 -520 660 104 19 66 chr1 216730698 216730910 -25933443 + SVA Other Other 665 866 -520 7341 58 6 35 chr1 216730924 216731906 -25932447 + SVA Other Other 433 1386 0 198 0 0 0 chr1 216731912 216731934 -25932419 + (A)n Simple_repeat Simple_repeat 1 22 0 1187 155 5 5 chr1 216731934 216732127 -25932226 - MER1A DNA MER1_type -279 248 56 1919 147 0 3 chr1 216732493 216732778 -25931575 + AluJb SINE Alu 11 294 -18 26 50 0 0 chr1 216732780 216732820 -25931533 + AT_rich Low_complexity Low_complexity 1 40 0 2166 100 31 3 chr1 216732820 216733109 -25931244 + AluSp SINE Alu 1 297 -16 1677 195 0 13 chr1 216733195 216733502 -25930851 + AluJb SINE Alu 1 303 -9 194 310 57 70 chr1 216733863 216734092 -25930261 + L2 LINE L2 2836 3061 -211 191 284 68 14 chr1 216734138 216734212 -25930141 + L2 LINE L2 3209 3286 -27 356 195 25 132 chr1 216734276 216734435 -25929918 + MLT1D LTR MaLR 72 213 -292 1411 231 0 14 chr1 216734436 216734730 -25929623 + AluJo SINE Alu 5 294 -18 1376 164 124 25 chr1 216734983 216735258 -25929095 + AluJo SINE Alu 1 302 0 531 227 0 0 chr1 216735271 216735368 -25928985 - AluJo SINE Alu -145 167 71 1740 148 23 4 chr1 216735373 216735636 -25928717 + AluSx SINE Alu 1 268 -44 300 70 0 0 chr1 216735648 216735691 -25928662 + (CAA)n Simple_repeat Simple_repeat 3 45 0 270 232 0 0 chr1 216735695 216735751 -25928602 - AluJo SINE Alu -223 79 24 496 164 8 102 chr1 216735809 216735840 -25928513 + L1M4 LINE L1 5473 5505 -661 1677 181 10 7 chr1 216735840 216736133 -25928220 + AluJb SINE Alu 1 294 -18 496 164 8 102 chr1 216736133 216736221 -25928132 + L1M4 LINE L1 5505 5589 -577 663 184 0 0 chr1 216736257 216736366 -25927987 - FLAM_A SINE Alu -30 112 4 2757 197 39 35 chr1 216736366 216736986 -25927367 + L1MB8 LINE L1 5552 6173 -5 1566 187 27 20 chr1 216737007 216737307 -25927046 + AluJo SINE Alu 1 302 -10 2169 136 0 3 chr1 216737609 216737918 -25926435 + AluSq SINE Alu 1 308 -5 342 245 11 11 chr1 216738129 216738223 -25926130 - LTR37A LTR ERV1 -93 333 240 1255 203 8 4 chr1 216738380 216738621 -25925732 - AluJo SINE Alu -26 286 45 22 0 0 0 chr1 216738659 216738681 -25925672 + AT_rich Low_complexity Low_complexity 1 22 0 697 218 0 0 chr1 216738681 216738814 -25925539 - FLAM_C SINE Alu 0 133 1 1245 258 85 32 chr1 216738913 216739518 -25924835 + L2 LINE L2 2458 3097 -216 1541 192 17 27 chr1 216739518 216739685 -25924668 - AluJb SINE Alu -9 303 139 2120 109 34 0 chr1 216739685 216739978 -25924375 - AluSg1 SINE Alu -4 305 3 1541 192 17 27 chr1 216739978 216740107 -25924246 - AluJb SINE Alu -173 139 10 1549 185 14 57 chr1 216740134 216740485 -25923868 - MLT1D LTR MaLR -8 497 162 1584 209 0 7 chr1 216740488 216740785 -25923568 + AluJo SINE Alu 5 299 -13 303 307 0 0 chr1 216740785 216740860 -25923493 + MER21B LTR ERV1 16 90 -773 2789 228 78 40 chr1 216740882 216741044 -25923309 + MER21B LTR ERV1 19 173 -690 2081 139 0 3 chr1 216741044 216741338 -25923015 - AluSq SINE Alu -20 293 1 2789 228 78 40 chr1 216741338 216741648 -25922705 + MER21B LTR ERV1 173 470 -393 1770 167 0 16 chr1 216741648 216741953 -25922400 + AluJo SINE Alu 1 300 -12 2789 228 78 40 chr1 216741953 216742237 -25922116 + MER21B LTR ERV1 470 805 -58 7239 106 19 15 chr1 216742254 216743321 -25921032 + MER11C LTR ERVK 1 1071 0 197 309 93 31 chr1 216743448 216743545 -25920808 + MIR SINE MIR 85 187 -75 207 203 47 31 chr1 216743775 216743839 -25920514 + (CACCC)n Simple_repeat Simple_repeat 1 65 0 666 200 0 0 chr1 216744216 216744336 -25920017 - AluJb SINE Alu -8 304 185 1353 225 7 26 chr1 216744338 216744640 -25919713 - AluJo SINE Alu -16 296 1 353 283 17 17 chr1 216744678 216744798 -25919555 + L1MC4a LINE L1 5723 5842 -1966 32 26 0 0 chr1 216744940 216744979 -25919374 + AT_rich Low_complexity Low_complexity 1 39 0 1478 197 29 29 chr1 216745049 216745359 -25918994 + AluJo SINE Alu 3 312 0 2207 102 7 0 chr1 216745406 216745701 -25918652 + AluSg SINE Alu 1 297 -13 349 286 22 94 chr1 216745763 216745863 -25918490 + L1MC4 LINE L1 5483 5560 -2248 531 171 65 41 chr1 216745863 216745986 -25918367 - FLAM_C SINE Alu -4 129 4 349 286 22 94 chr1 216745986 216746109 -25918244 + L1MC4 LINE L1 5560 5690 -2118 631 175 29 0 chr1 216746151 216746254 -25918099 - U6 snRNA snRNA 0 107 2 561 167 9 65 chr1 216746474 216746582 -25917771 + MER8 DNA MER2_type 4 105 -134 1035 145 0 0 chr1 216746593 216746738 -25917615 + AluJb SINE Alu 130 274 -38 1693 194 0 0 chr1 216747159 216747443 -25916910 + AluJb SINE Alu 1 284 -28 441 0 0 0 chr1 216747444 216747493 -25916860 + (CA)n Simple_repeat Simple_repeat 2 50 0 1906 71 0 0 chr1 216747812 216748036 -25916317 + AluSq SINE Alu 3 226 -87 890 199 42 121 chr1 216749752 216750084 -25914269 + L1MC4 LINE L1 6718 7069 -938 340 197 0 0 chr1 216750567 216750633 -25913720 - MSTD LTR MaLR -1 395 330 615 186 0 43 chr1 216750634 216750822 -25913531 + GA-rich Low_complexity Low_complexity 1 180 0 1636 174 92 16 chr1 216750831 216751148 -25913205 - MSTD LTR MaLR -55 341 1 1944 142 10 3 chr1 216752283 216752579 -25911774 + AluSq SINE Alu 1 298 -15 2087 124 7 10 chr1 216752784 216753082 -25911271 + AluSq SINE Alu 1 297 -16 1893 155 3 7 chr1 216753393 216753696 -25910657 + AluSx SINE Alu 3 304 -8 2124 110 4 0 chr1 216754442 216754723 -25909630 + AluSg SINE Alu 1 282 -28 22 0 0 0 chr1 216755519 216755541 -25908812 + AT_rich Low_complexity Low_complexity 1 22 0 1675 188 71 27 chr1 216805566 216805686 -25858667 + L1ME LINE L1 4735 4848 -1298 1715 180 3 20 chr1 216805686 216805992 -25858361 - AluJb SINE Alu -11 301 1 1675 188 71 27 chr1 216805992 216806319 -25858034 + L1ME LINE L1 4848 5202 -944 2198 107 0 3 chr1 216806320 216806609 -25857744 + AluSx SINE Alu 1 288 -24 1347 246 40 25 chr1 216806905 216807502 -25856851 + L1MB8 LINE L1 2949 3554 -2592 4078 161 47 49 chr1 216807870 216808874 -25855479 + L1MB8 LINE L1 5188 6178 0 421 241 132 35 chr1 216808875 216809103 -25855250 + L1ME LINE L1 5428 5677 -493 482 154 109 9 chr1 216809234 216809344 -25855009 + MER5C DNA MER1_type 4 124 -200 369 159 136 34 chr1 216809354 216809442 -25854911 + MER5C DNA MER1_type 226 322 -2 1692 151 0 4 chr1 216809768 216810027 -25854326 + AluJb SINE Alu 1 258 -54 1016 234 25 7 chr1 216810079 216810365 -25853988 - L1MB8 LINE L1 -9 6169 5879 417 152 0 0 chr1 216810500 216810579 -25853774 + AluJb SINE Alu 233 311 -1 3820 236 54 18 chr1 216810579 216811738 -25852615 + L1M4 LINE L1 3956 5168 -978 1614 176 7 36 chr1 216811738 216812045 -25852308 + AluJo SINE Alu 1 298 -14 3820 236 54 18 chr1 216812045 216812189 -25852164 + L1M4 LINE L1 5168 5305 -841 2321 64 3 22 chr1 216812198 216812509 -25851844 + AluY SINE Alu 5 309 -2 1836 115 25 14 chr1 216812645 216812931 -25851422 - AluSx SINE Alu -23 289 1 744 214 52 179 chr1 216813250 216813414 -25850939 - L2 LINE L2 -41 3272 3089 2406 100 0 0 chr1 216813414 216813724 -25850629 + AluSg SINE Alu 1 310 0 744 214 52 179 chr1 216813724 216813999 -25850354 - L2 LINE L2 -224 3089 2889 188 389 56 0 chr1 216814058 216814130 -25850223 + L2 LINE L2 3143 3218 -54 401 202 133 43 chr1 216814667 216814840 -25849513 + MIR SINE MIR 37 218 -44 24 32 0 0 chr1 216815715 216815746 -25848607 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr1 216815870 216815912 -25848441 + AT_rich Low_complexity Low_complexity 1 42 0 1107 153 84 16 chr1 216816184 216816374 -25847979 + AluJb SINE Alu 87 289 -23 652 157 0 0 chr1 216816556 216816658 -25847695 + Tigger3b DNA MER2_type 1 102 -1129 2197 60 33 50 chr1 216816703 216816767 -25847586 + Tigger3b DNA MER2_type 279 343 -2685 1939 106 8 0 chr1 216816767 216817021 -25847332 - AluSx SINE Alu -16 296 41 2197 60 33 50 chr1 216817021 216817320 -25847033 + Tigger3b DNA MER2_type 343 636 -595 810 111 16 16 chr1 216817324 216817450 -25846903 + AluSq/x SINE Alu 6 131 -182 2133 112 3 32 chr1 216817722 216818036 -25846317 + AluSx SINE Alu 1 305 -7 1772 169 4 0 chr1 216818484 216818763 -25845590 + AluJb SINE Alu 3 282 -30 2313 41 17 3 chr1 216818974 216819266 -25845087 - AluY SINE Alu -15 296 1 364 219 15 8 chr1 216819499 216819651 -25844702 - AluS SINE Alu -238 65 1 1587 225 66 21 chr1 216819663 216820273 -25844080 - L1M4 LINE L1 -2646 3500 2864 2224 131 19 25 chr1 216820274 216820640 -25843713 - THE1B LTR MaLR 0 364 1 1352 101 0 50 chr1 216820640 216820756 -25843597 - THE1B-int LTR MaLR 0 1580 1479 2205 134 0 0 chr1 216820756 216821054 -25843299 + AluSx SINE Alu 1 298 -14 1352 101 0 50 chr1 216821054 216821155 -25843198 - THE1B-int LTR MaLR -101 1479 1374 1100 282 83 31 chr1 216821418 216822368 -25841985 + L1M4b LINE L1 1331 2507 -4631 376 266 92 29 chr1 216822400 216822573 -25841780 - MLT1H1 LTR MaLR -40 515 332 2191 110 0 0 chr1 216822713 216823013 -25841340 - AluY SINE Alu -11 300 1 2180 64 50 0 chr1 216823664 216823946 -25840407 - AluY SINE Alu -15 296 1 481 302 9 0 chr1 216825385 216825501 -25838852 - L3 LINE CR1 -18 1559 1443 1808 116 56 4 chr1 216826054 216826322 -25838031 - AluSx SINE Alu -22 290 9 2581 217 23 12 chr1 216826330 216827017 -25837336 - L1MB8 LINE L1 -274 5904 5211 2108 103 10 3 chr1 216827025 216827315 -25837038 - AluSq SINE Alu -21 292 1 3843 149 62 48 chr1 216828098 216828965 -25835388 - L1MB7 LINE L1 -19 6165 5287 517 131 19 0 chr1 216829298 216829405 -25834948 + CT-rich Low_complexity Low_complexity 2 110 0 321 68 0 0 chr1 216829405 216829449 -25834904 + (CA)n Simple_repeat Simple_repeat 1 44 0 307 294 49 16 chr1 216829462 216829707 -25834646 - L1MEc LINE L1 -6035 361 67 990 224 37 9 chr1 216830395 216830609 -25833744 - MER58A DNA MER1_type 0 224 5 234 136 0 0 chr1 216830670 216830714 -25833639 + (TA)n Simple_repeat Simple_repeat 1 44 0 2451 129 24 21 chr1 216831235 216831653 -25832700 - L1PA15 LINE L1 -3 6162 5744 375 73 0 0 chr1 216831653 216831708 -25832645 - L1PA15 LINE L1 -643 5522 5468 225 234 57 64 chr1 216832060 216832201 -25832152 + MER20B DNA MER1_type 1 140 -643 1231 161 62 0 chr1 216832707 216832981 -25831372 + MER33 DNA MER1_type 34 324 0 331 307 39 8 chr1 216833587 216833714 -25830639 - MIR SINE MIR -55 207 77 1778 104 118 11 chr1 216834339 216834619 -25829734 - AluSg SINE Alu 0 310 1 194 390 75 14 chr1 216834664 216834810 -25829543 + L2 LINE L2 2884 3038 -234 635 255 136 25 chr1 216835416 216835824 -25828529 - L1ME1 LINE L1 -44 6122 5656 21 36 0 0 chr1 216836065 216836093 -25828260 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr1 216836154 216836174 -25828179 + (A)n Simple_repeat Simple_repeat 1 20 0 482 254 59 35 chr1 216836824 216836993 -25827360 - L1ME3A LINE L1 -8 6162 5990 297 283 129 28 chr1 216837024 216837256 -25827097 - L1MDa LINE L1 -4953 1577 1325 1258 130 5 34 chr1 216837501 216837708 -25826645 + AluJb SINE Alu 85 285 -27 4664 152 38 31 chr1 216837934 216838139 -25826214 + L1MB4 LINE L1 5262 5464 -716 2941 106 117 21 chr1 216838139 216838619 -25825734 - MER1A DNA MER1_type -1 526 1 4664 152 38 31 chr1 216838619 216839320 -25825033 + L1MB4 LINE L1 5464 6174 -6 3098 212 85 55 chr1 216839315 216841075 -25823278 + L1ME1 LINE L1 4350 6161 -5 * 4217 215 54 26 chr1 216842557 216843755 -25820598 + L1M4 LINE L1 3482 4713 -1433 1362 89 16 21 chr1 216843774 216843964 -25820389 + AluSx SINE Alu 1 189 -123 204 283 109 33 chr1 216845771 216845863 -25818490 + MIR SINE MIR 48 146 -62 2324 69 20 7 chr1 216846869 216847174 -25817179 - AluY SINE Alu -2 309 1 4363 130 30 6 chr1 216849063 216849771 -25814582 + Tigger2 DNA MER2_type 1 725 -1993 2334 69 14 0 chr1 216850086 216850375 -25813978 - AluY SINE Alu -18 293 1 2001 111 0 7 chr1 216850818 216851089 -25813264 - AluSx SINE Alu -23 289 21 233 56 0 28 chr1 216856123 216856159 -25808194 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 630 150 0 0 chr1 216856190 216856290 -25808063 - FRAM SINE Alu 0 176 77 9751 97 35 13 chr1 216857505 216858409 -25805944 - THE1B-int LTR MaLR -179 1401 455 2395 94 0 0 chr1 216858409 216858708 -25805645 - AluSc SINE Alu -6 303 5 9751 97 35 13 chr1 216858708 216859174 -25805179 - THE1B-int LTR MaLR -1125 455 1 2392 102 22 25 chr1 216859174 216859536 -25804817 - THE1B LTR MaLR 0 364 4 2451 224 89 21 chr1 216859537 216860819 -25803534 - L1MEc LINE L1 -3277 2938 1628 4141 154 36 85 chr1 216860868 216861713 -25802640 - L1MB8 LINE L1 -9 6169 5383 1949 135 0 3 chr1 216861713 216862015 -25802338 - AluSx SINE Alu 0 301 1 4141 154 36 85 chr1 216862015 216862496 -25801857 - L1MB8 LINE L1 -795 5383 4880 4004 226 68 72 chr1 216862483 216864103 -25800250 - L1MEc LINE L1 -4760 1636 23 * 199 295 0 16 chr1 216864286 216864347 -25800006 + L2 LINE L2 3161 3220 -93 198 343 46 37 chr1 216864961 216865069 -25799284 - L2 LINE L2 -11 3302 3194 1122 278 111 21 chr1 216865149 216865865 -25798488 - L2 LINE L2 -5 3308 2542 940 201 64 54 chr1 216865865 216866179 -25798174 + L1ME1 LINE L1 5845 6161 -5 699 191 38 67 chr1 216866197 216866406 -25797947 - L2 LINE L2 -801 2513 2311 416 204 204 45 chr1 216866960 216867092 -25797261 + MIR SINE MIR 35 187 -75 264 250 0 0 chr1 216867834 216867890 -25796463 + C-rich Low_complexity Low_complexity 6 61 0 245 235 47 0 chr1 216868214 216868299 -25796054 + L1MC4 LINE L1 6614 6702 -1340 3592 113 46 9 chr1 216868328 216868911 -25795442 + Tigger3(Golem) DNA MER2_type 2425 3029 0 215 238 40 10 chr1 216869362 216869463 -25794890 + (TA)n Simple_repeat Simple_repeat 1 104 0 911 282 78 66 chr1 216869572 216870044 -25794309 - L2 LINE L2 -10 3303 2826 234 325 99 6 chr1 216870012 216870168 -25794185 + MIR SINE MIR 17 188 -63 * 23 0 0 0 chr1 216870289 216870312 -25794041 + AT_rich Low_complexity Low_complexity 1 23 0 333 303 0 11 chr1 216871745 216871834 -25792519 + MIR3 SINE MIR 121 208 0 2208 122 0 0 chr1 216873919 216874213 -25790140 + AluSx SINE Alu 1 294 -18 747 209 68 0 chr1 216875074 216875237 -25789116 - MIR SINE MIR 0 262 89 626 144 0 0 chr1 216875248 216875338 -25789015 - 5S rRNA rRNA -31 90 1 2322 97 0 7 chr1 216875642 216875952 -25788401 - AluSx SINE Alu -4 308 1 2277 103 3 0 chr1 216877158 216877460 -25786893 - AluSp SINE Alu -10 303 1 1754 144 32 11 chr1 216878138 216878423 -25785930 - AluJb SINE Alu -5 307 17 1198 138 0 0 chr1 216878463 216878637 -25785716 + AluSg/x SINE Alu 128 301 -9 423 314 111 14 chr1 216879083 216879290 -25785063 + MIR SINE MIR 17 243 -19 374 333 126 5 chr1 216880041 216880263 -25784090 - L3 LINE CR1 -12 1565 1317 835 178 127 11 chr1 216880357 216880594 -25783759 - L1P2 LINE L1 -556 5598 5336 828 308 29 71 chr1 216880590 216880802 -25783551 - L1MEc LINE L1 -5837 559 340 * 2387 85 0 3 chr1 216880802 216881107 -25783246 - AluSg SINE Alu -6 304 1 828 308 29 71 chr1 216881107 216881416 -25782937 - L1MEc LINE L1 -6056 340 60 932 219 127 65 chr1 216881450 216881961 -25782392 - L1MC5 LINE L1 -496 7465 6923 1945 138 34 3 chr1 216881980 216882276 -25782077 - AluJb SINE Alu -7 305 1 8447 222 92 20 chr1 216882296 216882714 -25781639 + L1ME1 LINE L1 2522 2909 -3257 1746 144 95 0 chr1 216882714 216882822 -25781531 + AluJb SINE Alu 1 97 -215 207 0 0 0 chr1 216882822 216882845 -25781508 + (CA)n Simple_repeat Simple_repeat 2 24 0 1746 144 95 0 chr1 216882845 216883021 -25781332 + AluJb SINE Alu 97 312 0 8447 222 92 20 chr1 216883021 216885592 -25778761 + L1ME1 LINE L1 2909 5711 -455 1195 230 83 36 chr1 216886151 216886594 -25777759 + L1ME1 LINE L1 5703 6166 0 1492 269 99 35 chr1 216886669 216887696 -25776657 - L1P4 LINE L1 -314 5849 4765 235 281 98 0 chr1 216887861 216887943 -25776410 - L3 LINE CR1 -353 1224 1135 328 193 204 11 chr1 216887966 216888054 -25776299 + FLAM_A SINE Alu 11 115 -18 412 303 0 21 chr1 216890277 216890419 -25773934 + L1ME4a LINE L1 5528 5666 -455 2271 101 10 0 chr1 216890421 216890727 -25773626 + AluSx SINE Alu 1 309 -3 1876 107 66 0 chr1 216890756 216891028 -25773325 + AluSx SINE Alu 1 290 -22 235 289 41 10 chr1 216891066 216891163 -25773190 + L1ME4a LINE L1 5711 5810 -311 254 247 130 20 chr1 216891276 216891422 -25772931 + L1ME4a LINE L1 5956 6117 -4 473 275 101 5 chr1 216892138 216892356 -25771997 + L1ME3A LINE L1 5713 5951 -219 247 289 43 80 chr1 216892424 216892611 -25771742 + L1ME3A LINE L1 5965 6144 -26 22 0 0 0 chr1 216892792 216892814 -25771539 + AT_rich Low_complexity Low_complexity 1 22 0 1624 146 44 58 chr1 216892815 216893110 -25771243 + AluJb SINE Alu 1 291 -21 1177 124 43 48 chr1 216894416 216894626 -25769727 + MER67A LTR ERV1 1 209 -334 585 181 120 0 chr1 216894644 216894777 -25769576 + MER67B LTR ERV1 512 660 -1 495 305 130 0 chr1 216895444 216895667 -25768686 + MIR SINE MIR 1 252 -10 346 276 167 21 chr1 216895876 216896068 -25768285 + L2 LINE L2 2613 2832 -482 348 305 85 18 chr1 216896570 216896734 -25767619 - L3 LINE CR1 -89 1488 1314 209 366 0 0 chr1 216897805 216897887 -25766466 + MIR3 SINE MIR 104 185 -23 623 75 0 18 chr1 216898447 216898701 -25765652 + AluY SINE Alu 1 306 -5 184 333 16 16 chr1 216898706 216898769 -25765584 - MER5A DNA MER1_type -84 105 43 188 354 61 10 chr1 216898775 216898874 -25765479 - MIR3 SINE MIR -23 185 82 455 266 124 58 chr1 216899088 216899434 -25764919 - L2 LINE L2 -95 3218 2850 1697 123 41 0 chr1 216899435 216899760 -25764593 - Tigger4(Zombi) DNA MER2_type 0 2731 1 765 152 42 67 chr1 216899764 216899929 -25764424 - L2 LINE L2 -467 2847 2687 3649 172 30 18 chr1 216899930 216900477 -25763876 + L1MB7 LINE L1 5400 5960 -224 1912 158 0 6 chr1 216900477 216900788 -25763565 + AluSx SINE Alu 1 309 -3 3649 172 30 18 chr1 216900788 216901002 -25763351 + L1MB7 LINE L1 5960 6170 -14 400 238 201 37 chr1 216901024 216901135 -25763218 - L2 LINE L2 -1501 1813 1722 2309 78 3 7 chr1 216901135 216901431 -25762922 + AluSc SINE Alu 1 295 -14 400 238 201 37 chr1 216901431 216901508 -25762845 - L2 LINE L2 -1592 1722 1594 289 328 37 8 chr1 216902505 216902639 -25761714 + Charlie2 DNA MER1_type 18 155 -2627 923 226 181 6 chr1 216902700 216903014 -25761339 + Charlie2 DNA MER1_type 1856 2224 -638 695 231 14 7 chr1 216903048 216903191 -25761162 - AluJb SINE Alu -35 277 134 518 219 116 52 chr1 216903206 216903634 -25760719 + Charlie2 DNA MER1_type 2313 2862 0 245 244 133 11 chr1 216903699 216903789 -25760564 + MER5A DNA MER1_type 9 109 -80 289 291 77 0 chr1 216904219 216904336 -25760017 - L2 LINE L2 -2 3311 3186 231 319 14 0 chr1 216904770 216904839 -25759514 - MIR SINE MIR -7 255 186 219 370 37 12 chr1 216904854 216904935 -25759418 + MIR SINE MIR 13 95 -167 21 36 0 0 chr1 216905185 216905213 -25759140 + AT_rich Low_complexity Low_complexity 1 28 0 2097 123 14 0 chr1 216905346 216905639 -25758714 + AluSx SINE Alu 1 297 -15 219 323 115 0 chr1 216905719 216905815 -25758538 + L2 LINE L2 3163 3269 -3 481 282 88 48 chr1 216906475 216906702 -25757651 - MIR SINE MIR 0 262 27 276 328 156 0 chr1 216906836 216906964 -25757389 + L2 LINE L2 2575 2722 -592 701 280 75 40 chr1 216907873 216908219 -25756134 + L3 LINE CR1 1084 1441 -136 1882 115 10 24 chr1 216908290 216908585 -25755768 + AluJb SINE Alu 1 291 -21 745 171 8 0 chr1 216909115 216909244 -25755109 + FLAM_A SINE Alu 4 133 0 674 251 40 57 chr1 216909827 216910054 -25754299 + MLT1H1 LTR MaLR 333 555 0 1891 236 44 13 chr1 216910098 216911133 -25753220 - L1MEc LINE L1 -3321 3061 1933 606 314 39 25 chr1 216911196 216911221 -25753132 + MLT1H LTR MaLR 79 102 -447 2173 113 0 52 chr1 216911221 216911547 -25752806 + AluSg SINE Alu 1 309 -1 606 314 39 25 chr1 216911547 216911725 -25752628 + MLT1H LTR MaLR 102 285 -264 2291 147 50 22 chr1 216913607 216913648 -25750705 - MSTA LTR MaLR 0 428 390 2032 133 3 7 chr1 216913648 216913942 -25750411 + AluJb SINE Alu 1 293 -19 2291 147 50 22 chr1 216913942 216914316 -25750037 - MSTA LTR MaLR -38 390 1 402 125 11 68 chr1 216915392 216915480 -25748873 - L1MC3 LINE L1 -9 7776 7694 378 164 15 0 chr1 216915480 216915547 -25748806 - L1MC3 LINE L1 -520 7265 7198 263 247 26 26 chr1 216915565 216915642 -25748711 - MLT1F1 LTR MaLR -445 122 46 2574 54 0 10 chr1 216920119 216920433 -25743920 - AluY SINE Alu 0 311 1 349 259 57 0 chr1 216920470 216920623 -25743730 - L1MEc LINE L1 -4706 1829 1516 251 191 29 29 chr1 216920936 216921004 -25743349 - L1MEc LINE L1 -5081 1291 1224 195 414 43 21 chr1 216921838 216921978 -25742375 + L2 LINE L2 3121 3263 -9 4417 131 40 1 chr1 216924762 216925478 -25738875 + Tigger2 DNA MER2_type 1 744 -1974 1466 92 88 17 chr1 216925541 216925781 -25738572 + Tigger2 DNA MER2_type 2462 2718 0 413 254 116 23 chr1 216927529 216927717 -25736636 + MIR SINE MIR 7 208 -54 1913 119 6 67 chr1 216929057 216929384 -25734969 + AluJb SINE Alu 1 307 -5 26 0 0 0 chr1 216930888 216930914 -25733439 + AT_rich Low_complexity Low_complexity 1 26 0 1914 137 3 32 chr1 216935104 216935417 -25728936 + AluJb SINE Alu 1 304 -8 608 212 146 0 chr1 216936596 216936761 -25727592 - MER5A DNA MER1_type 0 189 1 1682 132 10 17 chr1 216937662 216937958 -25726395 + AluY SINE Alu 1 294 -17 2095 93 7 23 chr1 216937973 216938283 -25726070 + AluSq SINE Alu 5 309 -4 1064 122 0 0 chr1 216940834 216940981 -25723372 - AluJb SINE Alu -21 291 145 1162 281 64 58 chr1 216941112 216941882 -25722471 - L1M4 LINE L1 -1526 4620 3847 1290 241 153 52 chr1 216941885 216942371 -25721982 - L1MC4a LINE L1 -1916 5892 5336 324 0 0 0 chr1 216942371 216942407 -25721946 + (TG)n Simple_repeat Simple_repeat 2 37 0 1290 241 153 52 chr1 216942407 216942500 -25721853 - L1MC4a LINE L1 -2472 5336 5254 770 167 46 88 chr1 216943650 216943866 -25720487 - MIR SINE MIR 0 262 56 725 180 12 54 chr1 216943911 216944078 -25720275 - MLT1D LTR MaLR -345 160 1 243 205 39 39 chr1 216944121 216944199 -25720154 + Charlie6 DNA MER1_type 1 78 -3422 1037 227 106 54 chr1 216944449 216944780 -25719573 + Charlie6 DNA MER1_type 96 443 -3057 * 3126 232 126 14 chr1 216944756 216945721 -25718632 + Charlie6 DNA MER1_type 634 1706 -1794 2014 130 10 0 chr1 216945721 216946014 -25718339 + AluSx SINE Alu 1 296 -16 2918 202 68 30 chr1 216947553 216948364 -25715989 + Charlie6 DNA MER1_type 2267 3108 -392 244 211 92 83 chr1 216948379 216948452 -25715901 + L1ME1 LINE L1 6053 6129 -37 2175 114 3 3 chr1 216948452 216948751 -25715602 - AluSq SINE Alu -14 299 1 244 211 92 83 chr1 216948751 216948786 -25715567 + L1ME1 LINE L1 6129 6162 -4 643 266 64 30 chr1 216949543 216949776 -25714577 - MIR SINE MIR -2 260 20 2070 113 0 3 chr1 216950216 216950523 -25713830 + AluSx SINE Alu 1 306 0 3028 166 35 11 chr1 216950541 216951088 -25713265 + MER68 LTR ERV1 3 562 0 2070 124 0 3 chr1 216951485 216951775 -25712578 + AluSx SINE Alu 1 289 -23 23 0 0 0 chr1 217052018 217052041 -25612312 + AT_rich Low_complexity Low_complexity 1 23 0 237 395 12 6 chr1 217052236 217052398 -25611955 + L2 LINE L2 2599 2761 -553 1636 35 5 0 chr1 217053240 217053440 -25610913 - L1P LINE L1 -1383 4763 4563 1619 148 24 17 chr1 217053455 217053745 -25610608 + AluJo SINE Alu 1 292 -20 514 147 29 59 chr1 217053753 217053889 -25610464 + L1MB8 LINE L1 6047 6178 0 198 0 0 0 chr1 217055342 217055364 -25608989 + (A)n Simple_repeat Simple_repeat 1 22 0 664 221 0 14 chr1 217055504 217055644 -25608709 + AluSq/x SINE Alu 2 139 -173 2483 264 150 17 chr1 217056046 217057124 -25607229 - L2 LINE L2 -1771 1543 322 933 251 112 37 chr1 217057571 217057945 -25606408 - MLT1J2 LTR MaLR 0 450 49 196 321 0 0 chr1 217058375 217058428 -25605925 - L2 LINE L2 0 3313 3261 1089 59 166 35 chr1 217058636 217058805 -25605548 - MER57-int LTR ERV1 -68 7469 7279 728 109 23 31 chr1 217058805 217058933 -25605420 - LTR54B LTR ERV1 -367 131 5 11648 105 43 35 chr1 217058935 217060714 -25603639 - MER57-int LTR ERV1 -389 7148 5355 1063 217 168 39 chr1 217060920 217061307 -25603046 + L2 LINE L2 2876 3312 -1 1603 188 0 3 chr1 217061413 217061701 -25602652 - AluJb SINE Alu -25 287 1 240 301 62 52 chr1 217061708 217061975 -25602378 - L1MC/D LINE L1 -417 5825 5618 1702 160 3 0 chr1 217062255 217062542 -25601811 + AluJo SINE Alu 22 309 -3 282 73 0 0 chr1 217062542 217062583 -25601770 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 225 0 0 0 chr1 217063143 217063168 -25601185 + (T)n Simple_repeat Simple_repeat 1 25 0 2023 115 0 34 chr1 217063326 217063649 -25600704 + AluSx SINE Alu 1 312 0 1668 188 0 3 chr1 217063657 217063945 -25600408 + AluJb SINE Alu 1 287 -25 474 257 32 5 chr1 217063951 217064138 -25600215 + L1M4 LINE L1 5130 5321 -825 596 193 60 72 chr1 217064165 217064331 -25600022 + L1ME3 LINE L1 5996 6159 -3 354 219 48 9 chr1 217064475 217064580 -25599773 + MER103 DNA DNA 1 109 -57 583 301 36 50 chr1 217064759 217065061 -25599292 - LTR16B LTR ERVL -8 442 104 2007 130 0 0 chr1 217065498 217065791 -25598562 - AluSg SINE Alu -17 293 1 185 91 0 30 chr1 217065986 217066019 -25598334 + (TC)n Simple_repeat Simple_repeat 2 33 0 2418 100 13 26 chr1 217067306 217067686 -25596667 - THE1C LTR MaLR 0 375 1 284 182 325 0 chr1 217067873 217067950 -25596403 + MIR3 SINE MIR 93 194 -14 243 0 0 0 chr1 217068482 217068509 -25595844 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1094 276 124 44 chr1 217069068 217069527 -25594826 + MER115 DNA AcHobo 6 426 -267 2051 117 3 0 chr1 217069527 217069818 -25594535 + AluSx SINE Alu 1 292 -20 1524 185 0 18 chr1 217069827 217070113 -25594240 + AluJo SINE Alu 1 281 -31 1094 276 124 44 chr1 217070113 217070262 -25594091 + MER115 DNA AcHobo 433 674 -19 2765 101 19 47 chr1 217070328 217070511 -25593842 - MER57B LTR ERV1 0 434 247 2267 61 0 7 chr1 217070511 217070805 -25593548 + AluY SINE Alu 6 297 -14 2765 101 19 47 chr1 217070805 217071048 -25593305 - MER57B LTR ERV1 -187 247 20 2073 119 0 13 chr1 217072123 217072435 -25591918 + AluSc SINE Alu 1 308 -1 415 157 0 0 chr1 217072879 217072949 -25591404 + MLT2B3 LTR ERVL 1 70 -484 235 224 15 0 chr1 217073079 217073146 -25591207 - L1M LINE L1 -843 5399 5332 2169 94 3 0 chr1 217073147 217073433 -25590920 - AluSc SINE Alu -22 287 1 2169 73 0 0 chr1 217073439 217073714 -25590639 - AluSp SINE Alu -2 311 37 2254 100 7 7 chr1 217073764 217074074 -25590279 - AluSx SINE Alu -2 310 1 246 353 82 33 chr1 217074402 217074586 -25589767 + L3 LINE CR1 1368 1560 -17 238 189 136 106 chr1 217074666 217074798 -25589555 + MIR SINE MIR 79 214 -48 474 274 60 30 chr1 217075413 217075581 -25588772 + MIR SINE MIR 57 229 -33 1553 181 16 33 chr1 217076412 217076716 -25587637 + AluJb SINE Alu 1 299 -13 234 0 0 0 chr1 217077153 217077179 -25587174 + (T)n Simple_repeat Simple_repeat 1 26 0 3959 94 20 0 chr1 217077844 217078387 -25585966 + MER41A LTR ERV1 1 554 0 207 343 88 0 chr1 217078536 217078638 -25585715 + L2 LINE L2 3162 3272 0 1884 148 14 0 chr1 217079216 217079513 -25584840 + AluSx SINE Alu 1 301 -11 265 100 380 0 chr1 217079690 217079740 -25584613 + AluSc SINE Alu 120 188 -111 1056 179 11 16 chr1 217079906 217080096 -25584257 + MER20 DNA MER1_type 30 218 -1 334 268 18 110 chr1 217080572 217080736 -25583617 - L2 LINE L2 0 3313 3165 2234 99 0 0 chr1 217080785 217081089 -25583264 - AluSx SINE Alu -8 304 1 2594 194 79 50 chr1 217082074 217082780 -25581573 - LTR8A LTR ERV1 0 727 1 279 271 31 21 chr1 217082842 217082938 -25581415 + MIR SINE MIR 40 136 -126 254 286 16 14 chr1 217083630 217083715 -25580638 - MIR SINE MIR -78 130 44 1930 113 17 30 chr1 217085243 217085544 -25578809 + AluSx SINE Alu 1 297 -15 1702 180 96 36 chr1 217086132 217086549 -25577804 - MLT1C LTR MaLR 0 467 26 2666 106 0 14 chr1 217086555 217086924 -25577429 + THE1B LTR MaLR 1 364 0 601 215 29 49 chr1 217087935 217088140 -25576213 - L1MEd LINE L1 -4862 1257 1057 784 118 0 8 chr1 217088141 217088260 -25576093 - AluJb SINE Alu -4 308 191 1299 128 0 0 chr1 217088262 217088442 -25575911 - THE1B LTR MaLR -127 237 58 896 106 5 144 chr1 217088450 217088638 -25575715 - AluJb SINE Alu -145 167 6 379 213 78 106 chr1 217088643 217088848 -25575505 - L1MEd LINE L1 -5056 1063 854 212 0 36 0 chr1 217088848 217088876 -25575477 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1864 146 3 7 chr1 217088880 217089182 -25575171 - AluSg SINE Alu -9 301 1 379 213 78 106 chr1 217089182 217089366 -25574987 - L1MEd LINE L1 -5268 851 680 1256 164 0 10 chr1 217089366 217089573 -25574780 - AluSg/x SINE Alu -22 290 86 245 136 45 0 chr1 217089712 217089756 -25574597 + LTR37A LTR ERV1 313 358 -68 2237 114 10 0 chr1 217089761 217090069 -25574284 - AluSx SINE Alu 0 312 2 279 299 24 24 chr1 217090112 217090239 -25574114 + L1ME LINE L1 5696 5822 -342 2004 151 0 3 chr1 217090392 217090690 -25573663 - AluSx SINE Alu -14 298 2 2287 99 7 3 chr1 217090986 217091290 -25573063 - AluSc SINE Alu 0 309 5 405 314 186 35 chr1 217092099 217092355 -25571998 + L2 LINE L2 2434 2650 -663 2265 129 0 0 chr1 217092355 217092665 -25571688 + AluSx SINE Alu 1 310 -2 405 314 186 35 chr1 217092665 217093131 -25571222 + L2 LINE L2 2650 3281 -32 526 241 21 28 chr1 217093374 217093519 -25570834 - MLT1I LTR MaLR -202 207 64 215 163 61 0 chr1 217093690 217093739 -25570614 - L2 LINE L2 -641 2673 2622 530 201 126 38 chr1 217093995 217094154 -25570199 + MER96 DNA MER1_type 1 173 -2 2798 182 116 58 chr1 217095376 217096117 -25568236 + LTR1 LTR ERV1 2 785 0 283 77 0 0 chr1 217096127 217096166 -25568187 + LTR1B LTR ERV1 788 826 0 2484 174 24 122 chr1 217097612 217098159 -25566194 + LTR9 LTR ERV1 1 470 -142 2421 69 3 10 chr1 217098159 217098464 -25565889 - AluY SINE Alu -8 303 1 2484 174 24 122 chr1 217098464 217098595 -25565758 + LTR9 LTR ERV1 470 612 0 537 253 121 0 chr1 217098706 217098880 -25565473 - MER63A DNA MER1_type -15 195 1 1651 194 6 22 chr1 217099036 217099115 -25565238 - AluJo SINE Alu -2 310 231 3773 163 64 26 chr1 217099115 217099815 -25564538 + LTR8A LTR ERV1 1 727 0 1651 194 6 22 chr1 217099815 217100050 -25564303 - AluJo SINE Alu -81 231 1 4474 82 11 0 chr1 217100284 217100832 -25563521 - MER41A LTR ERV1 0 554 1 850 202 12 0 chr1 217100965 217101133 -25563220 - MIR SINE MIR -70 192 23 553 206 44 0 chr1 217102342 217102478 -25561875 + MER5B DNA MER1_type 1 142 -36 1403 177 82 19 chr1 217102512 217103106 -25561247 + LTR8A LTR ERV1 1 672 -55 667 111 0 10 chr1 217103106 217103205 -25561148 + MER4A LTR ERV1 1 98 -566 288 180 20 0 chr1 217103205 217103255 -25561098 + MER4A LTR ERV1 263 313 -351 2291 55 3 22 chr1 217103262 217103574 -25560779 + LTR7 LTR ERV1 1 306 -144 255 279 123 25 chr1 217104089 217104211 -25560142 + L3 LINE CR1 790 923 -654 350 288 100 28 chr1 217104403 217104635 -25559718 + L3 LINE CR1 1265 1560 -17 1741 170 130 3 chr1 217110039 217110363 -25553990 + MLT1A1 LTR MaLR 1 365 0 406 177 65 24 chr1 217111193 217111317 -25553036 + L1MC5 LINE L1 7797 7925 -36 229 26 26 26 chr1 217114839 217114878 -25549475 + (GA)n Simple_repeat Simple_repeat 2 40 0 564 275 179 5 chr1 217115095 217115313 -25549040 + MIR SINE MIR 5 260 -2 632 255 87 0 chr1 217117614 217117775 -25546578 + MIR SINE MIR 24 198 -64 510 266 22 94 chr1 217118665 217118722 -25545631 + MER102b DNA MER1_type 86 146 -1282 2212 100 3 17 chr1 217118722 217119023 -25545330 + AluSp SINE Alu 1 297 -16 510 266 22 94 chr1 217119023 217119240 -25545113 + MER102b DNA MER1_type 146 340 -1 202 296 23 57 chr1 217119244 217119332 -25545021 + L2 LINE L2 3184 3268 -4 22 0 0 0 chr1 217119378 217119400 -25544953 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 217119564 217119587 -25544766 + AT_rich Low_complexity Low_complexity 1 23 0 2286 108 0 3 chr1 217121786 217122081 -25542272 + AluSg SINE Alu 1 294 -16 233 156 0 44 chr1 217122143 217122188 -25542165 + L2 LINE L2 3187 3229 -84 2142 122 23 0 chr1 217122935 217123239 -25541114 + AluSx SINE Alu 1 311 -1 357 122 40 0 chr1 217123244 217123318 -25541035 + GA-rich Low_complexity Low_complexity 2 78 0 23 0 0 0 chr1 217123324 217123347 -25541006 + AT_rich Low_complexity Low_complexity 1 23 0 339 268 345 18 chr1 217123368 217123536 -25540817 - MIR SINE MIR -34 228 6 186 47 0 70 chr1 217124798 217124841 -25539512 + (TA)n Simple_repeat Simple_repeat 2 41 0 229 297 88 22 chr1 217126090 217126181 -25538172 - L2 LINE L2 -56 3257 3161 2352 72 0 33 chr1 217126211 217126518 -25537835 - AluSg SINE Alu -13 297 1 2441 129 18 5 chr1 217126862 217127257 -25537096 + L1MB3 LINE L1 5764 6163 -20 314 216 66 12 chr1 217127275 217127428 -25536925 + (TA)n Simple_repeat Simple_repeat 1 165 -11 216 0 0 0 chr1 217127428 217127452 -25536901 + (TC)n Simple_repeat Simple_repeat 2 25 0 314 216 66 12 chr1 217127452 217127465 -25536888 + (TA)n Simple_repeat Simple_repeat 165 176 0 1603 184 13 7 chr1 217127465 217127764 -25536589 - AluSx SINE Alu -11 301 1 29 0 0 0 chr1 217127784 217127813 -25536540 + AT_rich Low_complexity Low_complexity 1 29 0 2159 120 3 0 chr1 217128260 217128552 -25535801 - AluSx SINE Alu -19 293 1 1387 124 9 5 chr1 217128897 217129107 -25535246 + MER57B LTR ERV1 224 434 0 2112 86 11 7 chr1 217129316 217129628 -25534725 - AluSc SINE Alu 0 313 1 773 220 7 0 chr1 217129842 217129983 -25534370 + MER3 DNA MER1_type 2 143 -66 2376 72 3 0 chr1 217131584 217131876 -25532477 - AluY SINE Alu -18 293 1 185 140 80 60 chr1 217132152 217132202 -25532151 + MER5B DNA MER1_type 123 173 -5 2309 102 0 0 chr1 217132269 217132589 -25531764 + AluSx SINE Alu 1 320 0 1986 125 17 3 chr1 217132795 217133084 -25531269 - AluSx SINE Alu -19 293 1 605 285 78 39 chr1 217134089 217134373 -25529980 + L2 LINE L2 2385 2679 -635 2745 121 66 103 chr1 217134438 217135077 -25529276 + L1MB3 LINE L1 5447 6061 -122 2370 101 0 0 chr1 217137707 217138013 -25526340 + AluSx SINE Alu 1 306 -6 1997 128 0 7 chr1 217139649 217139938 -25524415 + AluSx SINE Alu 5 291 -21 185 203 17 68 chr1 217140055 217140114 -25524239 - MIR SINE MIR -113 149 94 221 286 132 0 chr1 217140589 217140680 -25523673 - L2 LINE L2 -2 3311 3209 229 189 181 39 chr1 217140727 217140854 -25523499 + L1P LINE L1 5215 5359 -787 269 330 163 14 chr1 217140942 217141291 -25523062 + L1MC/D LINE L1 5494 5894 -1914 23 33 0 0 chr1 217141376 217141406 -25522947 + AT_rich Low_complexity Low_complexity 1 30 0 285 163 0 0 chr1 217141457 217141506 -25522847 - MER83B LTR ERV1 -104 274 226 521 262 49 12 chr1 217141639 217141803 -25522550 - MIR SINE MIR -55 207 38 379 335 35 18 chr1 217142147 217142317 -25522036 + LTR67 LTR ERVL 2 174 -383 2313 89 0 13 chr1 217142343 217142645 -25521708 + AluSc SINE Alu 1 298 -11 412 250 105 29 chr1 217142719 217142891 -25521462 + LTR67 LTR ERVL 373 557 0 1510 98 5 0 chr1 217143335 217143540 -25520813 - AluSg/x SINE Alu -10 302 97 244 233 192 25 chr1 217143655 217143775 -25520578 + L2 LINE L2 2825 2964 -349 287 246 174 56 chr1 217143816 217144011 -25520342 + L2 LINE L2 3096 3313 0 2404 70 0 35 chr1 217144143 217144458 -25519895 - AluY SINE Alu -7 304 1 679 188 0 74 chr1 217145516 217145665 -25518688 - FLAM_C SINE Alu -5 138 1 1724 175 31 29 chr1 217145690 217146072 -25518281 + L1ME2 LINE L1 5779 6161 -3 2293 97 0 3 chr1 217146505 217146803 -25517550 - AluSp SINE Alu -16 297 1 2155 127 109 23 chr1 217150043 217150398 -25513955 + MSTA LTR MaLR 1 324 -104 2561 62 0 3 chr1 217150398 217150706 -25513647 - AluY SINE Alu -4 307 1 1942 116 10 36 chr1 217150706 217151009 -25513344 - AluSx SINE Alu -17 295 1 2155 127 109 23 chr1 217151009 217151046 -25513307 + MSTA LTR MaLR 323 428 0 243 0 0 0 chr1 217151167 217151194 -25513159 + (A)n Simple_repeat Simple_repeat 1 27 0 225 103 0 0 chr1 217151754 217151787 -25512566 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1927 161 7 0 chr1 217151787 217152097 -25512256 - AluJb SINE Alu 0 312 1 467 158 13 0 chr1 217152379 217152455 -25511898 + AluJo SINE Alu 3 79 -233 991 235 14 5 chr1 217152564 217152807 -25511546 + AluJo SINE Alu 59 303 0 198 0 0 0 chr1 217152859 217152881 -25511472 + (A)n Simple_repeat Simple_repeat 1 22 0 2401 49 0 3 chr1 217153288 217153574 -25510779 + AluY SINE Alu 1 285 -26 379 123 53 24 chr1 217153607 217153777 -25510576 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 581 29 82 29 chr1 217153739 217153910 -25510443 + (TA)n Simple_repeat Simple_repeat 1 180 0 439 78 10 78 chr1 217153944 217154137 -25510216 + (TA)n Simple_repeat Simple_repeat 1 180 0 1378 143 34 179 chr1 217154354 217154761 -25509592 - MER7A DNA MER2_type 0 346 1 270 267 67 111 chr1 217155112 217155247 -25509106 - MIR SINE MIR -75 187 59 196 310 124 9 chr1 217156316 217156429 -25507924 - MIR SINE MIR -46 216 91 681 254 11 49 chr1 217158300 217158485 -25505868 - MER5B DNA MER1_type 0 178 1 4676 148 39 31 chr1 217163095 217163637 -25500716 + L1MB7 LINE L1 5106 5663 -521 2573 198 89 29 chr1 217163637 217164253 -25500100 - MER82 DNA MER2_type 0 653 1 4676 148 39 31 chr1 217164253 217164761 -25499592 + L1MB7 LINE L1 5663 6165 -19 976 175 11 11 chr1 217164800 217164989 -25499364 - MER5A DNA MER1_type 0 189 1 195 239 90 45 chr1 217164995 217165062 -25499291 + L2 LINE L2 3158 3227 -45 26 0 0 0 chr1 217165562 217165588 -25498765 + AT_rich Low_complexity Low_complexity 1 26 0 541 293 36 12 chr1 217166181 217166348 -25498005 + MIR3 SINE MIR 35 205 -3 886 236 0 24 chr1 217167214 217167422 -25496931 - MER3 DNA MER1_type 0 209 7 21 0 0 0 chr1 217169201 217169222 -25495131 + AT_rich Low_complexity Low_complexity 1 21 0 2155 106 10 7 chr1 217169345 217169647 -25494706 - AluSx SINE Alu -9 303 1 23 68 0 0 chr1 217169818 217169862 -25494491 + AT_rich Low_complexity Low_complexity 1 44 0 3332 72 16 0 chr1 217171057 217171487 -25492866 - LTR3b LTR ERVK 0 437 1 488 107 27 0 chr1 217171499 217171574 -25492779 - HERVK14 LTR ERVK -61 5884 5808 * 2361 144 0 38 chr1 217171549 217172010 -25492343 - HERVK14 LTR ERVK -377 5568 2995 * 5336 177 38 7 chr1 217172009 217172969 -25491384 - HERVK14 LTR ERVK -4934 2309 1321 379 283 0 0 chr1 217172973 217173065 -25491288 - HERVK14 LTR ERVK -6576 667 576 559 179 14 11 chr1 217173120 217173301 -25491052 - HERVK14 LTR ERVK -6971 272 55 3320 86 14 2 chr1 217173402 217173834 -25490519 - LTR3b LTR ERVK 0 437 1 1690 160 0 28 chr1 217175710 217175998 -25488355 - AluJo SINE Alu -32 280 1 775 196 0 0 chr1 217176917 217177050 -25487303 - FLAM_C SINE Alu 0 133 1 219 297 34 8 chr1 217178032 217178150 -25486203 + GA-rich Low_complexity Low_complexity 5 125 0 511 165 19 19 chr1 217178728 217178831 -25485522 + U13 snRNA snRNA 2 104 0 1490 161 3 89 chr1 217178843 217179167 -25485186 + AluJo SINE Alu 1 296 -16 345 250 0 0 chr1 217180062 217180130 -25484223 + Charlie1 DNA MER1_type 1 68 -2693 1750 148 70 28 chr1 217180131 217180531 -25483822 + Charlie1 DNA MER1_type 2344 2760 -1 185 327 0 0 chr1 217180833 217180888 -25483465 - L2 LINE L2 -68 3245 3191 270 297 126 74 chr1 217181010 217181185 -25483168 - MIR3 SINE MIR -9 199 16 2067 108 18 0 chr1 217181330 217181616 -25482737 - AluSg SINE Alu -19 291 1 270 0 0 0 chr1 217181978 217182008 -25482345 + (CA)n Simple_repeat Simple_repeat 2 31 0 588 130 26 9 chr1 217182853 217182968 -25481385 - L1MB8 LINE L1 0 6178 6062 34 0 0 0 chr1 217182968 217183002 -25481351 + AT_rich Low_complexity Low_complexity 1 34 0 1696 152 24 17 chr1 217183002 217183292 -25481061 - AluJo SINE Alu -20 292 1 6433 28 21 0 chr1 217183307 217184897 -25479456 + L1PA4 LINE L1 4563 6155 0 2323 81 0 14 chr1 217185101 217185397 -25478956 + AluSp SINE Alu 3 294 -19 1389 171 4 4 chr1 217187111 217187350 -25477003 + AluJo SINE Alu 5 243 -69 463 294 163 0 chr1 217188442 217188602 -25475751 - MIR3 SINE MIR -6 202 17 214 361 9 19 chr1 217189465 217189573 -25474780 + MER5A DNA MER1_type 36 142 -47 236 395 12 6 chr1 217189949 217190111 -25474242 - L2 LINE L2 -553 2761 2599 23 0 0 0 chr1 217190306 217190329 -25474024 + AT_rich Low_complexity Low_complexity 1 23 0 451 200 100 9 chr1 217191713 217191823 -25472530 + MIR3 SINE MIR 76 195 -13 246 186 68 0 chr1 217192553 217192612 -25471741 - L1ME4a LINE L1 0 6121 6059 256 221 105 0 chr1 217192765 217192851 -25471502 - L1ME4a LINE L1 -259 5862 5768 2160 132 3 6 chr1 217193032 217193343 -25471010 - AluSq SINE Alu -2 311 2 2149 116 3 3 chr1 217193490 217193782 -25470571 - AluSq SINE Alu -21 292 1 22 0 0 0 chr1 217193802 217193824 -25470529 + AT_rich Low_complexity Low_complexity 1 22 0 2215 110 3 0 chr1 217194056 217194347 -25470006 - AluSq SINE Alu -21 292 1 224 149 21 0 chr1 217195827 217195874 -25468479 + (TA)n Simple_repeat Simple_repeat 1 48 0 944 187 5 39 chr1 217196189 217196392 -25467961 - L1ME3 LINE L1 -27 6135 5940 255 61 0 0 chr1 217196930 217196963 -25467390 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 961 174 53 21 chr1 217196966 217197156 -25467197 - AluJo SINE Alu -30 282 87 952 209 94 25 chr1 217197624 217197868 -25466485 - MIR SINE MIR 0 262 2 185 292 21 0 chr1 217198459 217198507 -25465846 + L2 LINE L2 3214 3262 -10 236 329 25 13 chr1 217198575 217198654 -25465699 + MIR SINE MIR 1 80 -182 2113 108 0 0 chr1 217198681 217198960 -25465393 - AluSc SINE Alu -13 296 18 9694 108 14 9 chr1 217199089 217200964 -25463389 - L1PA8A LINE L1 0 6131 4240 2512 82 0 0 chr1 217200964 217201269 -25463084 - AluSc SINE Alu -3 306 2 9694 108 14 9 chr1 217201269 217201529 -25462824 - L1PA8A LINE L1 -1891 4240 3983 21196 96 14 8 chr1 217201641 217203384 -25460969 - L1PA8A LINE L1 -134 5997 4266 2523 79 0 0 chr1 217203384 217203689 -25460664 - AluSc SINE Alu -3 306 2 21196 96 14 8 chr1 217203689 217205664 -25458689 - L1PA8A LINE L1 -1865 4266 2264 2334 112 3 0 chr1 217205685 217205997 -25458356 - AluSp SINE Alu 0 313 1 570 214 15 23 chr1 217206015 217206146 -25458207 + MIR SINE MIR 119 248 -14 2344 117 0 0 chr1 217207801 217208109 -25456244 - AluSx SINE Alu -4 308 1 207 0 0 0 chr1 217208247 217208270 -25456083 + (T)n Simple_repeat Simple_repeat 1 23 0 220 98 49 24 chr1 217209206 217209247 -25455106 - L2 LINE L2 -557 2757 2716 788 88 35 0 chr1 217209781 217209894 -25454459 - Tigger5 DNA MER2_type -198 2125 2009 628 212 25 0 chr1 217209895 217210013 -25454340 - Tigger5 DNA MER2_type -2202 121 1 2082 124 14 0 chr1 217210031 217210322 -25454031 + AluSx SINE Alu 1 295 -17 203 0 37 0 chr1 217210542 217210569 -25453784 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 804 106 26 9 chr1 217210574 217210687 -25453666 - FLAM_C SINE Alu -18 115 1 221 197 0 61 chr1 217212084 217212150 -25452203 + A-rich Low_complexity Low_complexity 4 65 0 207 0 0 0 chr1 217212544 217212567 -25451786 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2202 79 18 0 chr1 217212569 217212847 -25451506 - AluSc SINE Alu -26 283 1 243 94 0 0 chr1 217213058 217213090 -25451263 + MER4B LTR ERV1 555 586 -24 314 282 109 78 chr1 217213702 217213996 -25450357 - L1M2 LINE L1 -6079 770 468 2902 66 20 0 chr1 217214328 217214676 -25449677 - THE1A LTR MaLR 0 355 1 195 252 87 29 chr1 217214851 217214954 -25449399 + MIR3 SINE MIR 15 123 -85 501 257 81 0 chr1 217215485 217215621 -25448732 + MER3 DNA MER1_type 63 209 0 311 301 146 0 chr1 217215630 217215733 -25448620 - MER5A DNA MER1_type 0 189 72 189 0 0 0 chr1 217215886 217215907 -25448446 + (CATTC)n Simple_repeat Simple_repeat 3 23 0 1455 176 37 107 chr1 217215914 217215982 -25448371 - MER7A DNA MER2_type -2692 346 275 4007 110 52 3 chr1 217215982 217216564 -25447789 + MER4B LTR ERV1 1 610 0 1455 176 37 107 chr1 217216564 217216869 -25447484 - MER7A DNA MER2_type -2763 275 1 291 224 93 28 chr1 217216995 217217102 -25447251 + MIR SINE MIR 85 198 -64 2202 123 0 0 chr1 217218281 217218574 -25445779 - AluSx SINE Alu -19 293 1 215 61 30 0 chr1 217218769 217218802 -25445551 + (TC)n Simple_repeat Simple_repeat 2 35 0 203 250 155 43 chr1 217220378 217220494 -25443859 - L2 LINE L2 0 3272 3144 311 277 10 10 chr1 217220588 217220689 -25443664 + MER5A DNA MER1_type 9 109 -80 407 167 0 0 chr1 217220741 217220800 -25443553 - LTR8A LTR ERV1 0 727 669 1111 84 7 13 chr1 217220800 217220954 -25443399 - MER4A LTR ERV1 0 664 512 3151 191 100 34 chr1 217221419 217221848 -25442505 + L1ME2 LINE L1 4786 5185 -979 1724 155 18 11 chr1 217221848 217222132 -25442221 + AluJo SINE Alu 6 291 -21 2283 112 0 10 chr1 217222134 217222447 -25441906 + AluSx SINE Alu 1 310 -2 3151 191 100 34 chr1 217222447 217223313 -25441040 + L1ME2 LINE L1 5185 6163 -1 435 135 22 22 chr1 217224388 217224477 -25439876 - L1PA16 LINE L1 0 6166 6078 1470 178 10 46 chr1 217225420 217225723 -25438630 - AluJo SINE Alu -20 292 1 616 264 93 26 chr1 217225997 217226190 -25438163 + MIR SINE MIR 3 208 -54 1235 241 57 35 chr1 217226739 217227162 -25437191 - L2 LINE L2 -1605 1709 1278 1665 192 7 3 chr1 217228325 217228622 -25435731 - AluJb SINE Alu -9 303 6 200 159 0 45 chr1 217229540 217229584 -25434769 + (CAATA)n Simple_repeat Simple_repeat 3 44 0 2130 90 36 0 chr1 217230015 217230293 -25434060 + AluSg SINE Alu 1 288 -22 2279 112 3 0 chr1 217230511 217230816 -25433537 - AluSg SINE Alu -4 306 1 896 175 10 92 chr1 217230931 217231137 -25433216 - MER5A DNA MER1_type 0 189 1 337 265 0 0 chr1 217231427 217231495 -25432858 - L2 LINE L2 0 3272 3205 3961 86 4 18 chr1 217231566 217232116 -25432237 - MER41A LTR ERV1 -9 545 4 22 0 0 0 chr1 217232651 217232673 -25431680 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr1 217233275 217233320 -25431033 + AT_rich Low_complexity Low_complexity 1 45 0 2123 148 0 0 chr1 217233620 217233930 -25430423 + AluSg SINE Alu 1 310 0 25 65 0 0 chr1 217234951 217234997 -25429356 + AT_rich Low_complexity Low_complexity 1 46 0 8010 26 11 0 chr1 217235026 217236139 -25428214 - L1PA4 LINE L1 0 6155 5034 3374 22 0 0 chr1 217236139 217236549 -25427804 + L1P LINE L1 2962 3371 -2775 1902 129 4 14 chr1 217236668 217236987 -25427366 + AluSx SINE Alu 10 325 0 431 189 0 0 chr1 217237108 217237182 -25427171 - MER4A LTR ERV1 -218 446 373 3614 62 0 9 chr1 217237183 217237635 -25426718 - LTR7 LTR ERV1 -2 448 1 2663 72 45 0 chr1 217237635 217238010 -25426343 - HERVH LTR ERV1 0 7713 7322 1423 134 19 0 chr1 217238008 217238224 -25426129 - HERVH LTR ERV1 -1894 5819 5600 * 4223 152 9 1 chr1 217238225 217238882 -25425471 - HERVH LTR ERV1 -2564 5149 4488 3368 125 0 6 chr1 217238884 217239389 -25424964 - HERVH LTR ERV1 -3720 3993 3492 1003 113 7 0 chr1 217239379 217239529 -25424824 - HERVH LTR ERV1 -4423 3290 3140 * 15903 90 8 14 chr1 217239523 217241801 -25422552 - HERVH LTR ERV1 -4726 2987 724 1157 271 111 35 chr1 217442206 217442781 -25221572 - L3 LINE CR1 -8 1569 951 209 81 0 27 chr1 217442784 217442821 -25221532 + (TTA)n Simple_repeat Simple_repeat 3 38 0 43369 38 22 1 chr1 217442821 217448828 -25215525 - L1PA3 LINE L1 -18 6137 3 3814 148 27 0 chr1 217449460 217450130 -25214223 - L1MB2 LINE L1 0 6171 5484 295 173 25 12 chr1 217450267 217450348 -25214005 + CT-rich Low_complexity Low_complexity 3 84 0 1446 134 10 12 chr1 217450350 217450721 -25213632 - L1MB2 LINE L1 -710 5470 5098 299 193 0 102 chr1 217450924 217451012 -25213341 - MER103 DNA DNA -77 89 11 954 281 147 20 chr1 217451143 217451538 -25212815 - MLT1H LTR MaLR -104 445 1 1006 254 102 76 chr1 217451865 217452420 -25211933 - MER115 DNA AcHobo -2 4029 3490 2410 87 27 16 chr1 217452420 217452787 -25211566 - THE1C LTR MaLR -4 371 1 1006 254 102 76 chr1 217452787 217452896 -25211457 - MER115 DNA AcHobo -541 3490 5 1468 231 96 42 chr1 217453267 217453725 -25210628 + L1ME1 LINE L1 5675 6157 -9 1326 142 3 133 chr1 217454746 217455077 -25209276 + MLT1B LTR MaLR 103 390 0 381 289 186 12 chr1 217455180 217455422 -25208931 + MLT1L LTR MaLR 326 609 -6 805 207 30 18 chr1 217455809 217456158 -25208195 + AluJo SINE Alu 125 475 0 666 302 83 49 chr1 217456365 217456812 -25207541 + MLT1K LTR MaLR 102 563 -25 1183 231 36 30 chr1 217456842 217456918 -25207435 - MER46C DNA MER2_type 0 338 264 1503 176 90 35 chr1 217456918 217457264 -25207089 - MLT1A1 LTR MaLR 0 365 1 1183 231 36 30 chr1 217457264 217457521 -25206832 - MER46C DNA MER2_type -74 264 3 3027 222 64 15 chr1 217458385 217459138 -25205215 + MER21B LTR ERV1 13 802 -61 1452 239 95 16 chr1 217459374 217459804 -25204549 + LTR16B LTR ERVL 1 464 0 1754 173 81 17 chr1 217461082 217461429 -25202924 - LTR26E LTR ERV1 -253 369 1 672 217 56 0 chr1 217461429 217461590 -25202763 - L1ME3A LINE L1 -182 5988 5819 2126 111 0 3 chr1 217461590 217461878 -25202475 - AluSg SINE Alu -11 299 13 2255 104 3 7 chr1 217461891 217462198 -25202155 - AluSx SINE Alu -6 306 1 619 239 40 135 chr1 217462200 217462757 -25201596 + L2 LINE L2 2778 3288 -25 2529 164 60 46 chr1 217462761 217463261 -25201092 - MLT2B2 LTR ERVL -2 513 7 2578 149 5 5 chr1 217465453 217465849 -25198504 + MSTD LTR MaLR 1 396 0 2690 133 2 18 chr1 217466141 217466593 -25197760 + L1MB3 LINE L1 5738 6182 -1 470 283 205 16 chr1 217466615 217466859 -25197494 + L2 LINE L2 3022 3311 -2 1277 264 93 29 chr1 217467110 217467602 -25196751 - MLT1L LTR MaLR -10 605 82 1065 113 2 48 chr1 217467894 217468104 -25196249 + L1MC1 LINE L1 5826 6030 -314 895 296 81 47 chr1 217468122 217468714 -25195639 - L2 LINE L2 -551 2763 2152 306 319 33 39 chr1 217468713 217468895 -25195458 + MIR SINE MIR 72 252 -10 * 206 61 0 30 chr1 217469142 217469175 -25195178 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 282 339 18 32 chr1 217469335 217469553 -25194800 - L2 LINE L2 -939 2375 2161 368 296 105 0 chr1 217469667 217469819 -25194534 + MIR SINE MIR 94 261 -1 1148 211 47 58 chr1 217470642 217471199 -25193154 - L1MD3 LINE L1 0 7995 7381 5871 66 17 4 chr1 217471199 217471955 -25192398 + MER4E LTR ERV1 1 766 0 1148 211 47 58 chr1 217471955 217472266 -25192087 - L1MD3 LINE L1 -614 7381 7068 287 339 79 18 chr1 217474167 217474394 -25189959 + MIR SINE MIR 8 248 -14 252 86 0 0 chr1 217475461 217475496 -25188857 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1858 167 7 0 chr1 217475995 217476282 -25188071 - AluJb SINE Alu -14 298 10 373 343 33 33 chr1 217476372 217476585 -25187768 - MIR SINE MIR -46 216 4 1302 235 37 13 chr1 217476592 217476949 -25187404 - L1ME3A LINE L1 -150 6003 5638 272 181 48 72 chr1 217476949 217477032 -25187321 - L1ME3A LINE L1 -1911 4218 4138 229 684 7 0 chr1 217477032 217477187 -25187166 + polypyrimidine Low_complexity Low_complexity 2 157 0 1857 167 0 6 chr1 217477191 217477502 -25186851 - AluSx SINE Alu -3 309 1 989 276 82 48 chr1 217477503 217477962 -25186391 - L1ME3A LINE L1 -2059 4070 3571 1790 147 3 42 chr1 217477962 217478269 -25186084 - AluJo SINE Alu -8 304 10 989 276 82 48 chr1 217478269 217478618 -25185735 - L1ME3A LINE L1 -2558 3571 3235 1601 185 91 0 chr1 217478620 217478851 -25185502 - AluJb SINE Alu 0 350 83 474 111 83 0 chr1 217478851 217478923 -25185430 - L1PA11 LINE L1 -4 6170 6093 1601 185 91 0 chr1 217478923 217479015 -25185338 - AluJb SINE Alu -267 83 1 933 285 78 14 chr1 217479092 217479607 -25184746 - L1ME3A LINE L1 -2897 3232 2685 276 311 158 25 chr1 217479657 217480062 -25184291 - L1ME3A LINE L1 -3555 2574 2116 1402 142 39 13 chr1 217480327 217480560 -25183793 - L1PB3 LINE L1 0 6154 5916 640 274 70 31 chr1 217480732 217481384 -25182969 - L1MEd LINE L1 -863 1627 945 2646 87 0 3 chr1 217481549 217481894 -25182459 - MER41A LTR ERV1 -210 344 1 449 244 15 9 chr1 217482062 217482192 -25182161 + MIR SINE MIR 11 145 -63 2334 162 5 56 chr1 217483194 217483832 -25180521 - LTR8A LTR ERV1 0 727 34 2504 94 33 22 chr1 217484016 217484376 -25179977 - THE1B LTR MaLR 0 364 1 231 288 76 23 chr1 217484596 217484728 -25179625 - MIR SINE MIR -62 200 62 4267 108 13 8 chr1 217484731 217485345 -25179008 - MER41B LTR ERV1 -18 617 1 1069 249 98 49 chr1 217485345 217485755 -25178598 - MER21B LTR ERV1 -301 562 133 231 204 61 0 chr1 217485726 217485775 -25178578 - MER77 LTR ERV1 -393 212 161 * 518 190 119 109 chr1 217488159 217488470 -25175883 - L1ME4a LINE L1 0 6121 5808 410 347 37 16 chr1 217490109 217490299 -25174054 + MIR3 SINE MIR 15 208 0 3240 95 17 0 chr1 217490342 217490763 -25173590 - MSTA LTR MaLR 0 428 1 246 200 0 0 chr1 217491482 217491532 -25172821 + MIR SINE MIR 161 210 -52 730 151 71 16 chr1 217491735 217491861 -25172492 + AluJb SINE Alu 2 134 -178 224 311 23 68 chr1 217491893 217492025 -25172328 - MIR3 SINE MIR -9 199 74 1921 154 0 3 chr1 217492111 217492397 -25171956 + AluJb SINE Alu 11 295 -17 576 0 0 0 chr1 217494036 217494100 -25170253 + (TA)n Simple_repeat Simple_repeat 2 65 0 547 252 16 8 chr1 217494100 217494227 -25170126 - MIR SINE MIR -134 128 1 592 267 94 0 chr1 217494279 217494481 -25169872 + MER112 DNA MER1_type 2 222 -38 2742 43 3 0 chr1 217494481 217494804 -25169549 + MER11D LTR ERVK 1 324 -573 654 279 74 7 chr1 217494962 217495231 -25169122 - L1MEd LINE L1 -5267 852 566 322 221 117 78 chr1 217495807 217495961 -25168392 + MLT1K LTR MaLR 206 365 -223 1354 85 0 0 chr1 217496827 217496992 -25167361 - AluSg/x SINE Alu -16 296 132 865 257 47 20 chr1 217497212 217497465 -25166888 - MIR SINE MIR 0 262 3 515 284 44 64 chr1 217497488 217497738 -25166615 + MIR SINE MIR 10 254 -8 4751 208 90 28 chr1 217498351 217498747 -25165606 - L1MD1 LINE L1 -9 6627 6257 2287 83 28 0 chr1 217498747 217499035 -25165318 + AluSq SINE Alu 1 296 -17 4751 208 90 28 chr1 217499035 217501405 -25162948 - L1MD1 LINE L1 -379 6257 3493 2204 232 90 33 chr1 217501513 217502365 -25161988 - L1M4 LINE L1 -2752 3394 2494 1002 177 0 22 chr1 217502365 217502546 -25161807 - AluSg/x SINE Alu -1 311 135 552 262 35 12 chr1 217502546 217502718 -25161635 - L1M4 LINE L1 -3641 2505 2330 245 196 39 0 chr1 217502719 217502770 -25161583 - L1M4 LINE L1 -909 5237 5185 4270 221 74 44 chr1 217502776 217504308 -25160045 - L1MD1 LINE L1 -4817 1723 35 533 296 60 20 chr1 217504825 217505024 -25159329 - MIR SINE MIR -16 246 40 1984 154 89 9 chr1 217505753 217506090 -25158263 - THE1B LTR MaLR 0 364 1 493 180 81 0 chr1 217506278 217506389 -25157964 + MER103 DNA DNA 36 155 -11 43598 34 23 1 chr1 217506666 217512690 -25151663 + L1PA2 LINE L1 3 6155 0 325 267 135 119 chr1 217514219 217514960 -25149393 + L1M2 LINE L1 514 1266 -5583 286 354 96 26 chr1 217515548 217515777 -25148576 + MIR SINE MIR 12 256 -6 1685 164 25 7 chr1 217515817 217516103 -25148250 + AluJo SINE Alu 1 291 -21 198 175 32 95 chr1 217516230 217516293 -25148060 + MIR SINE MIR 60 118 -90 2016 181 54 9 chr1 217516295 217516644 -25147709 + MLT1A1 LTR MaLR 1 365 0 346 241 73 84 chr1 217517380 217517621 -25146732 + MIR SINE MIR 33 260 -2 272 297 89 38 chr1 217518010 217518246 -25146107 - L2 LINE L2 -221 3051 2804 1176 199 53 44 chr1 217519428 217519749 -25144604 + MER33 DNA MER1_type 1 324 0 2325 110 0 0 chr1 217519924 217520232 -25144121 - AluSx SINE Alu -4 308 1 1686 174 24 3 chr1 217520239 217520533 -25143820 - AluJb SINE Alu -2 310 11 192 315 247 12 chr1 217520973 217521135 -25143218 - MIR SINE MIR -16 246 47 24 0 0 0 chr1 217521619 217521643 -25142710 + AT_rich Low_complexity Low_complexity 1 24 0 249 183 430 11 chr1 217522343 217522436 -25141917 + L2 LINE L2 3181 3312 -1 2205 107 3 0 chr1 217522462 217522752 -25141601 + AluY SINE Alu 8 298 -13 2246 113 0 19 chr1 217522764 217523082 -25141271 + AluSx SINE Alu 1 312 0 1072 197 35 0 chr1 217523532 217523730 -25140623 + MER3 DNA MER1_type 1 205 -4 359 300 90 67 chr1 217523733 217523956 -25140397 + MIR SINE MIR 17 244 -18 535 302 39 17 chr1 217524019 217524251 -25140102 - MER112 DNA MER1_type -11 249 13 1665 179 7 24 chr1 217524464 217524761 -25139592 - AluJb SINE Alu -20 292 1 824 218 57 5 chr1 217524815 217525026 -25139327 + MLT1F LTR MaLR 14 235 -307 670 181 199 23 chr1 217525035 217525206 -25139147 + MLT1F LTR MaLR 359 559 -8 220 344 39 70 chr1 217525229 217525357 -25138996 + MER5A DNA MER1_type 66 189 0 * 334 355 82 37 chr1 217525357 217525925 -25138428 + L2 LINE L2 2066 2659 -655 1685 87 17 4 chr1 217525994 217526224 -25138129 - L1P4 LINE L1 -394 5774 5542 2488 55 6 6 chr1 217526248 217526559 -25137794 + L1PA10 LINE L1 5776 6086 -82 2531 115 8 32 chr1 217526989 217527140 -25137213 + THE1B LTR MaLR 1 154 -210 2236 97 6 25 chr1 217527140 217527459 -25136894 + AluSq SINE Alu 1 313 0 2531 115 8 32 chr1 217527459 217527680 -25136673 + THE1B LTR MaLR 154 364 0 600 221 31 8 chr1 217527994 217528121 -25136232 + L2 LINE L2 3180 3309 -4 188 350 186 0 chr1 217528173 217528270 -25136083 + L2 LINE L2 3153 3267 -5 196 376 0 30 chr1 217528895 217528996 -25135357 - L2 LINE L2 -42 3230 3133 404 234 21 135 chr1 217529144 217529336 -25135017 + MLT1J2 LTR MaLR 3 172 -278 325 150 75 8 chr1 217529381 217529501 -25134852 + (TA)n Simple_repeat Simple_repeat 1 128 0 * 378 202 11 58 chr1 217529446 217529695 -25134658 + (TTATA)n Simple_repeat Simple_repeat 1 237 0 190 130 65 22 chr1 217529710 217529802 -25134551 + (TA)n Simple_repeat Simple_repeat 1 96 0 1971 154 118 47 chr1 217529804 217530227 -25134126 + MER74C LTR ERVL 8 460 0 336 195 45 143 chr1 217530384 217530538 -25133815 + MLT1J1 LTR MaLR 287 425 -21 471 241 89 42 chr1 217531060 217531352 -25133001 - L1ME4a LINE L1 -139 5982 5684 325 322 52 9 chr1 217531353 217531468 -25132885 - MIR SINE MIR -14 248 129 2505 73 0 0 chr1 217531544 217531845 -25132508 - AluSc SINE Alu -8 301 1 2128 180 87 30 chr1 217531868 217532279 -25132074 - MER74A LTR ERVL 0 558 109 2243 77 0 3 chr1 217532279 217532578 -25131775 - AluY SINE Alu -13 298 1 2128 180 87 30 chr1 217532578 217532694 -25131659 - MER74A LTR ERVL -449 109 1 452 283 68 23 chr1 217532700 217532877 -25131476 - L1ME4a LINE L1 -616 5550 5366 337 297 194 57 chr1 217532923 217533159 -25131194 + L2 LINE L2 2740 2942 -330 324 0 0 0 chr1 217533159 217533195 -25131158 + (CA)n Simple_repeat Simple_repeat 2 37 0 337 297 194 57 chr1 217533195 217533416 -25130937 + L2 LINE L2 2942 3250 -22 725 230 47 85 chr1 217533833 217534270 -25130083 + MLT1J LTR MaLR 31 481 -30 245 281 44 18 chr1 217534311 217534425 -25129928 + L2 LINE L2 3102 3218 -95 437 136 30 0 chr1 217534427 217534493 -25129860 - U4 snRNA snRNA -77 68 1 458 235 31 10 chr1 217534493 217534591 -25129762 + L2 LINE L2 3209 3308 -5 2381 149 8 5 chr1 217535189 217535578 -25128775 + MLT1B LTR MaLR 1 390 0 45076 38 2 2 chr1 217535627 217541792 -25122561 + L1PA3 LINE L1 9 6174 0 1387 273 111 35 chr1 217541795 217542370 -25121983 + L3 LINE CR1 951 1569 -8 21 89 0 0 chr1 217543626 217543682 -25120671 + GC_rich Low_complexity Low_complexity 1 56 0 275 276 31 25 chr1 217543830 217543993 -25120360 + C-rich Low_complexity Low_complexity 6 169 0 33 25 0 0 chr1 217544012 217544052 -25120301 + GC_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr1 217544715 217544737 -25119616 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 217544934 217544956 -25119397 + (CAG)n Simple_repeat Simple_repeat 2 23 0 186 118 0 0 chr1 217545356 217545390 -25118963 + (G)n Simple_repeat Simple_repeat 1 34 0 25 31 0 0 chr1 217546247 217546279 -25118074 + AT_rich Low_complexity Low_complexity 1 32 0 687 188 130 0 chr1 217547175 217547334 -25117019 - MER5A DNA MER1_type -2 187 5 432 219 188 0 chr1 217548157 217548285 -25116068 + MIR SINE MIR 63 214 -48 224 151 75 94 chr1 217548348 217548401 -25115952 - L2 LINE L2 -1 3271 3220 418 347 24 0 chr1 217548584 217548708 -25115645 + L2 LINE L2 3177 3303 -10 203 411 27 15 chr1 217548901 217549164 -25115189 - L2 LINE L2 -337 2977 2712 240 35 0 0 chr1 217550041 217550070 -25114283 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 646 272 20 31 chr1 217550648 217550843 -25113510 - MIR SINE MIR 0 262 70 967 195 0 0 chr1 217551726 217551911 -25112442 + AluJo SINE Alu 122 306 -6 1169 147 179 52 chr1 217552797 217552942 -25111411 + AluJb SINE Alu 1 126 -185 2135 112 0 0 chr1 217552942 217553236 -25111117 + AluSx SINE Alu 1 294 -18 1169 147 179 52 chr1 217553236 217553369 -25110984 + AluJb SINE Alu 126 311 0 888 119 0 33 chr1 217554249 217554400 -25109953 - AluSp/q SINE Alu 0 313 168 286 238 0 86 chr1 217554761 217554866 -25109487 + MIR SINE MIR 76 171 -91 745 271 25 10 chr1 217557122 217557325 -25107028 + MIR SINE MIR 50 255 -7 385 229 57 9 chr1 217557972 217558077 -25106276 - L2 LINE L2 -3 3310 3201 1481 197 83 33 chr1 217558106 217558467 -25105886 - MLT1B LTR MaLR -11 379 1 317 278 65 9 chr1 217558521 217558629 -25105724 - L2 LINE L2 -194 3078 2965 219 137 59 39 chr1 217558724 217558775 -25105578 - L2 LINE L2 0 3272 3221 223 250 50 38 chr1 217559870 217559950 -25104403 - L2 LINE L2 -10 3262 3182 470 247 147 0 chr1 217560290 217560440 -25103913 - MIR3 SINE MIR -18 190 19 278 274 17 60 chr1 217560433 217560550 -25103803 + MIR SINE MIR 108 219 -43 * 214 293 35 0 chr1 217560872 217560930 -25103423 - L2 LINE L2 -211 3061 3002 1886 109 29 26 chr1 217560936 217561247 -25103106 + L1MA2 LINE L1 5993 6304 0 186 167 0 0 chr1 217561291 217561327 -25103026 + L2 LINE L2 3277 3312 -1 801 293 35 13 chr1 217561523 217561752 -25102601 - MIR SINE MIR -2 260 27 287 296 178 47 chr1 217562021 217562075 -25102278 - L2 LINE L2 -562 2752 2706 899 203 14 40 chr1 217562075 217562297 -25102056 + MER20 DNA MER1_type 4 219 0 287 296 178 47 chr1 217562297 217562708 -25101645 - L2 LINE L2 -608 2706 2226 370 268 21 21 chr1 217562869 217562966 -25101387 + MIR SINE MIR 35 131 -131 432 270 47 50 chr1 217564673 217564865 -25099488 - L1ME4a LINE L1 -209 5912 5762 563 288 73 52 chr1 217564908 217565235 -25099118 - L2 LINE L2 -118 3195 2862 335 255 144 48 chr1 217565236 217565424 -25098929 - L1ME4a LINE L1 -759 5387 5182 685 292 98 13 chr1 217565474 217566005 -25098348 - L1ME4a LINE L1 -1039 5107 4487 205 320 96 16 chr1 217566290 217566415 -25097938 - MIR SINE MIR -32 230 96 234 367 31 0 chr1 217568568 217568696 -25095657 - MER5A DNA MER1_type -22 167 36 847 321 172 22 chr1 217568837 217569813 -25094540 + L2 LINE L2 1613 2734 -580 237 33 0 0 chr1 217570932 217570962 -25093391 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 226 254 16 48 chr1 217571455 217571518 -25092835 - L2 LINE L2 -9 3304 3244 225 286 41 20 chr1 217571504 217571602 -25092751 + MIR3 SINE MIR 7 106 -102 * 422 247 128 70 chr1 217571819 217572062 -25092291 - HAL1 LINE L1 -104 2403 2147 1237 73 6 6 chr1 217572062 217572226 -25092127 + AluSp SINE Alu 1 164 -149 551 281 104 54 chr1 217572226 217572667 -25091686 - HAL1 LINE L1 -357 2150 1688 2037 248 142 67 chr1 217572843 217572961 -25091392 - HAL1 LINE L1 -818 1689 1581 4481 70 6 50 chr1 217572961 217573619 -25090734 + L1PB1 LINE L1 5522 6150 -1 2037 248 142 67 chr1 217573619 217574871 -25089482 - HAL1 LINE L1 -926 1581 1 504 260 85 9 chr1 217574893 217575116 -25089237 - MIR SINE MIR -10 252 13 201 254 0 0 chr1 217578275 217578346 -25086007 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 771 201 0 0 chr1 217578368 217578547 -25085806 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 201 237 0 0 chr1 217578603 217578662 -25085691 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 398 260 111 28 chr1 217579936 217580117 -25084236 + MIR SINE MIR 42 237 -25 207 253 107 9 chr1 217580539 217580673 -25083680 + MER91 DNA MER1_type 44 190 0 5934 158 24 3 chr1 217580826 217582805 -25081548 - L1PB3 LINE L1 -2 6152 4131 262 333 0 0 chr1 217584125 217584188 -25080165 - L2 LINE L2 -13 3259 3197 374 157 39 10 chr1 217585035 217585137 -25079216 + CT-rich Low_complexity Low_complexity 3 107 0 223 104 42 0 chr1 217585655 217585703 -25078650 + (CA)n Simple_repeat Simple_repeat 2 51 0 1995 206 52 7 chr1 217585968 217586197 -25078156 + Charlie4a DNA MER1_type 28 245 -1716 1516 169 0 0 chr1 217586197 217586433 -25077920 + MER46A DNA MER2_type 1 236 0 1995 206 52 7 chr1 217586433 217586663 -25077690 + Charlie4a DNA MER1_type 245 508 0 780 239 34 5 chr1 217586825 217587034 -25077319 - MIR SINE MIR -1 261 47 321 244 41 41 chr1 217588323 217588446 -25075907 - MIR SINE MIR -129 133 11 41049 53 1 5 chr1 217588857 217593952 -25070401 - L1P LINE L1 -847 5299 227 4268 57 51 0 chr1 217594052 217594579 -25069774 + MER11D LTR ERVK 344 897 0 1304 165 0 62 chr1 217594964 217595206 -25069147 - AluJo SINE Alu -25 287 61 2542 99 94 8 chr1 217595794 217596188 -25068165 - MSTA LTR MaLR 0 428 1 240 304 13 25 chr1 217597054 217597133 -25067220 + MIR SINE MIR 16 93 -115 261 254 0 0 chr1 217597214 217597269 -25067084 + MIR3 SINE MIR 118 172 -36 1625 202 84 35 chr1 217598138 217598566 -25065787 - MLT2B1 LTR ERVL 0 414 1 949 166 0 6 chr1 217599915 217600248 -25064105 + (TCCA)n Simple_repeat Simple_repeat 1 330 0 463 290 54 75 chr1 217600257 217600536 -25063817 - L2 LINE L2 -2 3270 2998 2557 117 19 0 chr1 217601137 217601505 -25062848 - THE1C LTR MaLR 0 375 1 220 335 93 47 chr1 217601636 217601979 -25062374 + L2 LINE L2 2268 2626 -688 234 298 48 57 chr1 217602137 217602261 -25062092 + L2 LINE L2 2622 2744 -570 525 56 0 0 chr1 217602265 217602337 -25062016 - L1PA5 LINE L1 -1 6153 6082 219 341 87 16 chr1 217604607 217604733 -25059620 - L2 LINE L2 0 3272 3138 2034 137 13 0 chr1 217606609 217606909 -25057444 - AluJb SINE Alu -8 304 1 186 43 0 0 chr1 217607152 217607175 -25057178 + (TA)n Simple_repeat Simple_repeat 2 24 0 432 265 66 33 chr1 217608058 217608209 -25056144 - MIR SINE MIR -50 212 57 1966 122 63 33 chr1 217609670 217610032 -25054321 - THE1C LTR MaLR 0 375 3 1976 157 3 3 chr1 217610743 217611048 -25053305 + AluSx SINE Alu 1 305 -7 1199 133 0 28 chr1 217611568 217611705 -25052648 + AluSx SINE Alu 1 133 -179 2579 63 0 0 chr1 217611705 217612008 -25052345 + AluY SINE Alu 1 303 -8 1199 133 0 28 chr1 217612008 217612050 -25052303 + AluSx SINE Alu 133 175 -137 2440 139 13 0 chr1 217612113 217612501 -25051852 - L1PA15 LINE L1 -2 6163 5771 3662 132 17 10 chr1 217612965 217613562 -25050791 - L1MA5A LINE L1 -3 6294 5694 439 256 104 6 chr1 217613567 217613730 -25050623 - MIR SINE MIR -54 208 32 16620 40 6 1 chr1 217613876 217616634 -25047719 - L1PA5 LINE L1 0 6154 3387 21303 75 1 9 chr1 217616734 217619518 -25044835 - L1PA5 LINE L1 -3373 2773 11 372 273 161 12 chr1 217619528 217619689 -25044664 + MER5A DNA MER1_type 4 188 -1 324 222 103 26 chr1 217619807 217619924 -25044429 - MIR SINE MIR -64 144 19 424 273 0 23 chr1 217619932 217620060 -25044293 - MER5B DNA MER1_type -2 176 52 658 223 71 19 chr1 217622633 217622844 -25041509 - L1M4 LINE L1 -3245 2901 2680 2089 204 15 138 chr1 217623570 217624218 -25040135 - MER77 LTR ERV1 -4 601 54 797 307 138 28 chr1 217624249 217624806 -25039547 + L2 LINE L2 2694 3313 0 462 221 19 0 chr1 217624816 217624920 -25039433 + MER103 DNA DNA 7 112 -54 1929 82 0 0 chr1 217625409 217625652 -25038701 - AluSx SINE Alu -59 253 11 1824 145 24 0 chr1 217626746 217627035 -25037318 + AluSg SINE Alu 1 296 -14 270 0 0 0 chr1 217629563 217629593 -25034760 + (TA)n Simple_repeat Simple_repeat 1 30 0 274 159 174 0 chr1 217631484 217631553 -25032800 + MER96 DNA MER1_type? 80 160 -15 529 143 205 37 chr1 217632021 217632050 -25032303 + MER5A DNA MER1_type 1 24 -165 183 80 0 0 chr1 217632050 217632075 -25032278 + (CAG)n Simple_repeat Simple_repeat 3 27 0 529 143 205 37 chr1 217632075 217632206 -25032147 + MER5A DNA MER1_type 24 188 -1 274 293 37 12 chr1 217632415 217632497 -25031856 + MER5B DNA MER1_type 90 173 -5 861 126 55 39 chr1 217634124 217634306 -25030047 - MER53 DNA DNA -4 185 1 442 274 68 36 chr1 217635547 217635799 -25028554 + MIR SINE MIR 3 262 0 506 255 49 67 chr1 217635998 217636265 -25028088 - MIR SINE MIR 0 262 1 188 289 19 0 chr1 217636541 217636593 -25027760 - MIR SINE MIR -62 146 94 290 294 46 55 chr1 217637270 217637379 -25026974 - L2 LINE L2 -22 3250 3143 309 330 57 0 chr1 217638418 217638524 -25025829 - L2 LINE L2 -5 3267 3156 846 121 0 0 chr1 217640262 217640386 -25023967 - FLAM_C SINE Alu -19 124 1 362 301 105 13 chr1 217640559 217640712 -25023641 - MIR SINE MIR -11 251 85 197 264 69 35 chr1 217640833 217640920 -25023433 + MIR3 SINE MIR 112 201 -7 206 271 96 29 chr1 217641201 217641338 -25023015 - MIR3 SINE MIR -108 154 2 1826 129 43 13 chr1 217644485 217644788 -25019565 - AluSx SINE Alu 0 312 1 327 207 46 0 chr1 217645222 217645309 -25019044 - MLT1C LTR MaLR -190 277 187 2490 18 0 0 chr1 217645370 217645650 -25018703 - L1PA5 LINE L1 -3 6151 5872 3372 24 0 0 chr1 217645650 217646032 -25018321 + L1PA5 LINE L1 5459 5840 -315 807 176 65 35 chr1 217646036 217646060 -25018293 - MLT1C LTR MaLR -287 180 158 2467 153 36 5 chr1 217646060 217646473 -25017880 + MSTB LTR MaLR 1 426 0 807 176 65 35 chr1 217646473 217646618 -25017735 - MLT1C LTR MaLR -309 158 6 520 322 17 22 chr1 217647031 217647211 -25017142 + MIR SINE MIR 19 197 -65 435 201 39 175 chr1 217647311 217647545 -25016808 - MIR SINE MIR -14 248 47 301 326 213 0 chr1 217649479 217649620 -25014733 - MER5A DNA MER1_type -6 183 13 398 148 341 22 chr1 217649769 217649904 -25014449 + MER5B DNA MER1_type 1 178 0 724 258 187 25 chr1 217650066 217650430 -25013923 - MLT1J1 LTR MaLR -22 424 2 948 314 211 25 chr1 217650812 217652183 -25012170 + L2 LINE L2 1351 2976 -338 491 194 95 162 chr1 217652254 217652600 -25011753 - MER5C DNA MER1_type -1 323 1 540 261 45 13 chr1 217654841 217654998 -25009355 - MIR SINE MIR -66 196 35 1932 137 0 3 chr1 217655357 217655641 -25008712 + AluJb SINE Alu 1 283 -29 12819 180 23 17 chr1 217655935 217662399 -25001954 + L1MC1 LINE L1 20 6604 -9 193 330 21 31 chr1 217663211 217663308 -25001045 - L2 LINE L2 -209 3063 2968 203 111 0 44 chr1 217664024 217664069 -25000284 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 620 317 66 21 chr1 217664612 217664855 -24999498 - MIR SINE MIR -2 260 7 2120 188 8 4 chr1 217665178 217665675 -24998678 - L1MA9 LINE L1 -32 6280 5743 268 248 139 64 chr1 217666244 217666510 -24997843 + LTR33A LTR ERVL 13 298 -225 333 315 39 31 chr1 217666727 217666854 -24997499 - MIR SINE MIR -122 140 13 194 348 89 0 chr1 217666864 217666976 -24997377 + MIR SINE MIR 108 229 -33 418 235 0 96 chr1 217667530 217667666 -24996687 - MIR SINE MIR -65 143 21 2517 96 0 0 chr1 217672423 217672735 -24991618 + AluSx SINE Alu 1 312 0 189 214 0 0 chr1 217673085 217673127 -24991226 + T-rich Low_complexity Low_complexity 1 42 0 1865 144 44 0 chr1 217673237 217673537 -24990816 - AluJo SINE Alu 0 312 1 2624 143 31 5 chr1 217677112 217677533 -24986820 - MSTB1 LTR MaLR 0 432 1 7384 196 78 16 chr1 217677533 217678735 -24985618 - MSTB1-int LTR MaLR 0 1651 330 1906 139 23 17 chr1 217678735 217679036 -24985317 - AluSg SINE Alu -7 303 1 7384 196 78 16 chr1 217679036 217679388 -24984965 - MSTB1-int LTR MaLR -1321 330 1 2698 127 28 30 chr1 217679388 217679644 -24984709 - MSTB1 LTR MaLR 0 432 176 2145 136 3 0 chr1 217679644 217679945 -24984408 + AluSp SINE Alu 1 302 -11 2698 127 28 30 chr1 217679945 217680121 -24984232 - MSTB1 LTR MaLR -256 176 1 242 339 243 26 chr1 217681072 217681261 -24983092 + MIR SINE MIR 21 250 -12 270 188 0 0 chr1 217682218 217682266 -24982087 - L2 LINE L2 -5 3308 3261 326 244 51 0 chr1 217682812 217682890 -24981463 + MIR3 SINE MIR 108 189 -19 332 158 92 0 chr1 217683558 217683634 -24980719 - L1MC2 LINE L1 -11 6333 6251 437 200 27 9 chr1 217683667 217683777 -24980576 - L1MC2 LINE L1 -87 6257 6146 246 140 20 0 chr1 217683777 217683827 -24980526 + L1MC2 LINE L1 6120 6170 -174 655 248 6 13 chr1 217684554 217684711 -24979642 + MIR SINE MIR 106 261 -1 362 307 93 74 chr1 217684866 217685136 -24979217 - L3 LINE CR1 -973 604 330 368 53 0 35 chr1 217685191 217685248 -24979105 + L1P4 LINE L1 5440 5494 -667 443 345 69 22 chr1 217685548 217685780 -24978573 + MIR SINE MIR 2 244 -18 504 163 49 24 chr1 217686312 217686435 -24977918 + MER20 DNA MER1_type 1 126 -93 472 175 39 117 chr1 217686486 217686640 -24977713 + MER20 DNA MER1_type 78 219 0 1275 242 113 11 chr1 217686750 217686895 -24977458 - Charlie4a DNA MER1_type -1470 491 362 243 0 0 0 chr1 217686895 217686922 -24977431 + (TA)n Simple_repeat Simple_repeat 1 27 0 1275 242 113 11 chr1 217686922 217687218 -24977135 - Charlie4a DNA MER1_type -1599 362 5 541 358 31 5 chr1 217687377 217687570 -24976783 + MIR SINE MIR 47 244 -18 522 289 70 69 chr1 217688241 217688954 -24975399 - BaEV-int LTR ERV1 -646 7139 3387 501 123 0 0 chr1 217689642 217689723 -24974630 - ALR/Alpha Satellite centromeric -66 106 26 545 321 11 14 chr1 217690011 217690298 -24974055 - BaEV-int LTR ERV1 -2668 3981 3696 1680 161 6 97 chr1 217690975 217691316 -24973037 - AluSp SINE Alu -3 310 1 2356 112 0 7 chr1 217691475 217691780 -24972573 - AluSc SINE Alu -6 303 1 908 141 0 22 chr1 217691789 217691924 -24972429 - FLAM_C SINE Alu -1 132 1 265 180 0 0 chr1 217692215 217692265 -24972088 + MER103 DNA DNA 48 97 -69 1566 168 74 34 chr1 217692285 217692636 -24971717 + MLT1A1 LTR MaLR 1 365 0 1273 218 38 45 chr1 217693194 217693594 -24970759 + MER69 DNA AcHobo 2085 2481 -45 210 267 0 33 chr1 217693640 217693700 -24970653 + MIR3 SINE MIR 148 205 -3 189 239 174 22 chr1 217693740 217693832 -24970521 - MIR SINE MIR 0 262 157 252 301 65 4 chr1 217694075 217694182 -24970171 + MIR SINE MIR 21 131 -77 210 322 8 33 chr1 217695225 217695346 -24969007 + GA-rich Low_complexity Low_complexity 1 118 0 373 258 21 10 chr1 217695776 217695873 -24968480 + MIR3 SINE MIR 105 202 -6 298 41 20 20 chr1 217696266 217696315 -24968038 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 1118 81 0 0 chr1 217696318 217696454 -24967899 - AluSq/x SINE Alu -177 136 1 209 293 164 0 chr1 217696881 217696997 -24967356 - L2 LINE L2 0 3313 3179 2571 33 20 0 chr1 217697272 217697578 -24966775 + L1PA4 LINE L1 5841 6152 -3 1180 142 17 0 chr1 217697578 217697833 -24966520 + AluSg/x SINE Alu 132 389 0 2161 27 0 23 chr1 217697846 217698108 -24966245 + L1PA2 LINE L1 5898 6153 -2 612 169 15 7 chr1 217698128 217698264 -24966089 + GA-rich Low_complexity Low_complexity 3 139 0 1703 189 12 50 chr1 217698270 217698671 -24965682 + MER65C LTR ERV1 67 452 -9 3157 161 14 45 chr1 217698770 217699408 -24964945 - L1MB3 LINE L1 -1 6182 5565 315 49 0 0 chr1 217699440 217699481 -24964872 + (GGAAA)n Simple_repeat Simple_repeat 4 44 0 681 203 17 6 chr1 217699482 217699659 -24964694 + GA-rich Low_complexity Low_complexity 1 179 0 509 167 10 0 chr1 217699663 217699759 -24964594 + L1M3 LINE L1 5497 5593 -590 842 218 44 19 chr1 217699962 217700168 -24964185 - MIR SINE MIR -3 259 49 427 300 25 0 chr1 217700324 217700444 -24963909 + MIR SINE MIR 32 154 -108 1491 224 42 35 chr1 217700449 217700874 -24963479 + L1ME2 LINE L1 5710 6137 -27 1629 82 0 0 chr1 217701138 217701334 -24963019 - AluY SINE Alu -6 305 110 30 59 0 0 chr1 217701343 217701394 -24962959 + AT_rich Low_complexity Low_complexity 1 51 0 2596 181 20 2 chr1 217701472 217701931 -24962422 + MLT1C LTR MaLR 1 467 0 269 273 34 45 chr1 217702674 217702762 -24961591 + L2 LINE L2 3183 3269 -3 941 208 157 18 chr1 217702859 217703185 -24961168 - MLT1G1 LTR MaLR -6 536 131 1366 216 41 89 chr1 217703185 217703550 -24960803 + MSTD LTR MaLR 1 345 -51 1957 153 0 3 chr1 217703550 217703838 -24960515 + AluJb SINE Alu 9 295 -17 1366 216 41 89 chr1 217703838 217703888 -24960465 + MSTD LTR MaLR 345 396 0 941 208 157 18 chr1 217703888 217704035 -24960318 - MLT1G1 LTR MaLR -411 131 6 540 280 67 0 chr1 217704493 217704643 -24959710 - MER91A DNA MER1_type -1 195 36 380 161 296 0 chr1 217704874 217704955 -24959398 + MER81 DNA DNA 10 114 0 562 290 86 122 chr1 217705001 217705311 -24959042 - L1MB3 LINE L1 -749 5397 5077 2158 120 3 0 chr1 217705311 217705743 -24958610 + AluSp SINE Alu 1 433 0 562 290 86 122 chr1 217705743 217706354 -24957999 - L1MB3 LINE L1 -1069 5077 4509 463 330 28 25 chr1 217706356 217706926 -24957427 - L1MB3 LINE L1 -1602 4544 3973 275 269 6 19 chr1 217708851 217709007 -24955346 + CT-rich Low_complexity Low_complexity 4 157 0 180 304 0 0 chr1 217709082 217709128 -24955225 - L2 LINE L2 -3 3310 3265 4784 145 20 56 chr1 217709265 217710127 -24954226 - L1MD1 LINE L1 -8 6628 5737 2185 124 23 0 chr1 217710127 217710433 -24953920 + AluSp SINE Alu 1 313 0 4784 145 20 56 chr1 217710433 217710514 -24953839 - L1MD1 LINE L1 -899 5737 5655 1767 208 32 71 chr1 217710514 217710581 -24953772 - MLT1D LTR MaLR -2 503 435 1705 172 38 14 chr1 217710581 217710700 -24953653 + AluJb SINE Alu 1 116 -196 333 0 0 0 chr1 217710700 217710737 -24953616 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1705 172 38 14 chr1 217710737 217710907 -24953446 + AluJb SINE Alu 116 297 -15 1767 208 32 71 chr1 217710907 217711362 -24952991 - MLT1D LTR MaLR -70 435 1 4784 145 20 56 chr1 217711362 217711920 -24952433 - L1MD1 LINE L1 -981 5655 5141 3416 200 31 45 chr1 217711900 217711944 -24952409 - L1MD1 LINE L1 -2965 3575 3532 * 1832 163 0 26 chr1 217711944 217712250 -24952103 - AluJo SINE Alu -12 300 3 3416 200 31 45 chr1 217712250 217712645 -24951708 - L1MD1 LINE L1 -3008 3532 3133 891 167 109 0 chr1 217712645 217712801 -24951552 + FAM SINE Alu 1 173 -2 3416 200 31 45 chr1 217712801 217713515 -24950838 - L1MD1 LINE L1 -3407 3133 2425 1149 97 0 0 chr1 217713515 217713659 -24950694 - AluSg/x SINE Alu -15 295 152 297 43 43 0 chr1 217713660 217713706 -24950647 - L1MD1 LINE L1 -4110 2430 2383 2796 91 0 0 chr1 217713712 217714076 -24950277 + HSMAR1 DNA Mariner 924 1287 0 234 246 0 29 chr1 217714110 217714179 -24950174 + L1MC5 LINE L1 7845 7911 -50 4244 215 64 51 chr1 217714411 217716153 -24948200 - L1MD1 LINE L1 -4532 2008 25 183 363 77 22 chr1 217717943 217718034 -24946319 + L2 LINE L2 3139 3234 -38 771 167 8 0 chr1 217718069 217718201 -24946152 + FLAM_C SINE Alu 1 133 0 555 90 0 0 chr1 217718203 217718281 -24946072 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 207 114 0 0 chr1 217719038 217719073 -24945280 + (CA)n Simple_repeat Simple_repeat 1 35 0 221 302 254 15 chr1 217719814 217720019 -24944334 + MIR SINE MIR 8 261 -1 272 262 111 6 chr1 217720201 217720369 -24943984 + MIR SINE MIR 3 188 -62 1983 213 0 3 chr1 217720651 217721017 -24943336 - MLT1A1 LTR MaLR 0 365 1 537 228 22 50 chr1 217721252 217721432 -24942921 - MER112 DNA MER1_type -84 176 2 346 227 8 86 chr1 217721950 217722078 -24942275 - L1ME1 LINE L1 -290 5876 5759 1433 270 85 30 chr1 217722114 217722708 -24941645 - MER77 LTR ERV1 -4 601 54 404 145 0 0 chr1 217722726 217722788 -24941565 - L1ME1 LINE L1 -403 5763 5702 * 465 170 142 30 chr1 217722775 217722909 -24941444 + L1ME2 LINE L1 5815 5964 -200 377 240 66 16 chr1 217723129 217723250 -24941103 - MIR SINE MIR -124 138 12 484 284 7 3 chr1 217723870 217724028 -24940325 - L1ME4a LINE L1 -279 5842 5688 42699 38 29 1 chr1 217724107 217730094 -24934259 - L1PA3 LINE L1 0 6155 1 1531 205 3 20 chr1 217730196 217730493 -24933860 + AluJb SINE Alu 1 292 -20 306 252 81 72 chr1 217730523 217730745 -24933608 + MLT1J LTR MaLR 39 262 -249 2446 71 6 6 chr1 217730915 217731226 -24933127 - AluY SINE Alu 0 311 1 1564 143 7 70 chr1 217731531 217731861 -24932492 - AluJb SINE Alu 0 311 1 284 250 29 0 chr1 217732634 217732702 -24931651 + MIR SINE MIR 51 120 -88 2077 133 3 16 chr1 217732783 217733091 -24931262 + AluSx SINE Alu 1 304 -8 1051 276 68 0 chr1 217733351 217733662 -24930691 + MER46C DNA MER2_type 1 332 -6 513 319 116 21 chr1 217733744 217734167 -24930186 - L1ME2 LINE L1 -235 5929 5451 627 272 38 13 chr1 217734610 217734990 -24929363 - L1ME2 LINE L1 -698 5464 5081 1569 189 57 49 chr1 217735446 217735796 -24928557 - MLT1A1 LTR MaLR -12 353 1 345 47 0 0 chr1 217736709 217736752 -24927601 + (CA)n Simple_repeat Simple_repeat 1 43 0 264 222 0 0 chr1 217736807 217736879 -24927474 + (TGAA)n Simple_repeat Simple_repeat 4 75 0 251 304 45 9 chr1 217737210 217737322 -24927031 - MIR SINE MIR -30 232 117 1050 173 8 84 chr1 217737340 217737577 -24926776 + AluJo SINE Alu 4 222 -90 267 103 0 0 chr1 217737579 217737618 -24926735 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 553 278 115 80 chr1 217739210 217739923 -24924430 + L1MC4 LINE L1 7277 8014 -28 1415 183 90 22 chr1 217740002 217740314 -24924039 + MER1B DNA MER1_type 1 333 -4 1999 158 3 0 chr1 217741444 217741754 -24922599 - AluJb SINE Alu -1 311 1 2041 134 3 7 chr1 217741868 217742167 -24922186 - AluSq SINE Alu -15 298 1 753 256 95 5 chr1 217742528 217742739 -24921614 - MIR SINE MIR -30 232 3 300 53 0 0 chr1 217742942 217742980 -24921373 + (TG)n Simple_repeat Simple_repeat 2 39 0 243 156 78 26 chr1 217743014 217743091 -24921262 + L1ME4a LINE L1 6040 6120 -1 237 300 0 30 chr1 217743151 217743251 -24921102 + HAL1b LINE L1 1196 1292 -56 246 287 216 47 chr1 217743526 217743864 -24920489 - L2 LINE L2 0 3313 2919 599 260 71 28 chr1 217743895 217744149 -24920204 - L2 LINE L2 -493 2821 2557 223 273 10 71 chr1 217744383 217744431 -24919922 - MIR SINE MIR -16 246 205 2878 121 91 58 chr1 217744431 217744967 -24919386 + MLT2B3 LTR ERVL 1 554 0 223 273 10 71 chr1 217744967 217745017 -24919336 - MIR SINE MIR -57 205 154 933 151 7 12 chr1 217745017 217745168 -24919185 - MSTB LTR MaLR 0 426 230 1323 104 19 33 chr1 217745168 217745379 -24918974 - MSTA-int LTR MaLR -1427 224 17 1924 169 63 25 chr1 217745379 217745783 -24918570 - MSTA LTR MaLR -3 425 3 318 274 44 9 chr1 217745786 217745899 -24918454 - MIR SINE MIR -108 154 38 1127 154 0 48 chr1 217747208 217747416 -24916937 + AluJo SINE Alu 10 207 -105 360 0 0 0 chr1 217747436 217747476 -24916877 + (TA)n Simple_repeat Simple_repeat 2 41 0 211 281 18 0 chr1 217747559 217747616 -24916737 + GA-rich Low_complexity Low_complexity 3 60 0 1013 261 121 11 chr1 217748537 217749027 -24915326 - MLT1E3 LTR MaLR 0 624 14 553 183 70 0 chr1 217749153 217749268 -24915085 - FAM SINE Alu -1 48 1 1381 276 44 17 chr1 217749292 217749343 -24915010 - L1ME LINE L1 -400 5770 5722 2014 259 32 27 chr1 217749343 217749933 -24914420 - MLT1E LTR MaLR 0 593 1 1381 276 44 17 chr1 217749933 217750518 -24913835 - L1ME LINE L1 -448 5722 5122 281 250 0 0 chr1 217750912 217750972 -24913381 + L2 LINE L2 3182 3241 -72 936 265 12 4 chr1 217750980 217751237 -24913116 + MIR SINE MIR 2 260 -2 285 310 45 81 chr1 217751367 217751725 -24912628 + L2 LINE L2 2570 2914 -400 184 390 140 15 chr1 217751875 217752011 -24912342 + L2 LINE L2 3117 3269 -3 195 42 0 0 chr1 217752165 217752189 -24912164 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 528 295 90 63 chr1 217752189 217752555 -24911798 - L2 LINE L2 -11 3302 2927 453 36 0 0 chr1 217755867 217755922 -24908431 + (TC)n Simple_repeat Simple_repeat 2 56 0 285 29 0 0 chr1 217755921 217755955 -24908398 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 1985 121 7 0 chr1 217755956 217756245 -24908108 - AluSx SINE Alu -21 291 1 394 289 123 101 chr1 217757114 217757174 -24907179 + L2 LINE L2 2843 2900 -372 2192 117 0 0 chr1 217757174 217757473 -24906880 - AluSx SINE Alu -13 299 1 394 289 123 101 chr1 217757473 217757828 -24906525 + L2 LINE L2 2900 3267 -5 305 258 136 106 chr1 217758032 217758467 -24905886 + L2 LINE L2 2809 3256 -16 2798 91 3 0 chr1 217758572 217758935 -24905418 - THE1B LTR MaLR 0 364 1 217 338 208 6 chr1 217759089 217759426 -24904927 - L2 LINE L2 -946 2368 1964 261 0 0 0 chr1 217759426 217759455 -24904898 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 1606 188 19 13 chr1 217759481 217759790 -24904563 + AluJo SINE Alu 1 311 -1 289 240 27 27 chr1 217760372 217760447 -24903906 - MIR SINE MIR -185 77 3 1700 155 20 14 chr1 217760618 217760915 -24903438 + AluJo SINE Alu 1 299 -13 306 293 80 27 chr1 217762100 217762250 -24902103 - MIR3 SINE MIR -21 187 30 452 263 35 0 chr1 217763619 217763733 -24900620 - MIR SINE MIR -97 165 48 448 163 31 31 chr1 217764234 217764332 -24900021 + MER5A DNA MER1_type 9 106 -83 267 294 87 0 chr1 217764461 217764553 -24899800 + MIR SINE MIR 50 149 -113 183 288 17 51 chr1 217764879 217764938 -24899415 + L3 LINE CR1 1512 1568 -9 267 203 0 0 chr1 217765328 217765392 -24898961 + (TA)n Simple_repeat Simple_repeat 2 65 0 1731 156 11 0 chr1 217765392 217765668 -24898685 - AluJo SINE Alu -33 279 1 308 205 128 34 chr1 217765693 217765810 -24898543 - L2 LINE L2 -15 3298 3171 1756 162 27 0 chr1 217765868 217765989 -24898364 + AluJb SINE Alu 1 117 -195 201 39 0 0 chr1 217765989 217766015 -24898338 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1756 162 27 0 chr1 217766015 217766189 -24898164 + AluJb SINE Alu 117 304 -8 213 261 130 0 chr1 217766440 217766509 -24897844 + MIR3 SINE MIR 123 200 -8 234 206 186 31 chr1 217767326 217767423 -24896930 - L2 LINE L2 0 3313 3202 308 380 57 0 chr1 217767438 217767630 -24896723 + L3 LINE CR1 189 391 -1186 485 140 21 32 chr1 217768783 217768876 -24895477 - MER51C LTR ERV1 0 640 549 * 1744 136 121 59 chr1 217768865 217769204 -24895149 - MER51A LTR ERV1 -274 360 1 421 158 49 37 chr1 217769472 217769554 -24894799 + MIR SINE MIR 79 161 -101 712 229 45 6 chr1 217769702 217769881 -24894472 - MER5A DNA MER1_type -3 186 1 213 305 63 11 chr1 217771075 217771170 -24893183 + MER5A DNA MER1_type 7 106 -83 2972 154 66 32 chr1 217771223 217771815 -24892538 - L1MB3 LINE L1 0 6183 5572 483 189 246 8 chr1 217771888 217772010 -24892343 + MER5B DNA MER1_type 28 178 0 222 281 62 0 chr1 217772018 217772082 -24892271 - MER5A DNA MER1_type 0 189 122 286 98 16 16 chr1 217772088 217772149 -24892204 + (CCA)n Simple_repeat Simple_repeat 2 62 0 448 229 38 19 chr1 217772150 217772255 -24892098 - MER5B DNA MER1_type -70 108 2 194 323 31 63 chr1 217772281 217772408 -24891945 - MIR3 SINE MIR -75 133 11 1745 148 31 0 chr1 217772845 217773135 -24891218 + AluSx SINE Alu 1 299 -13 2126 125 3 0 chr1 217773276 217773588 -24890765 - AluSq SINE Alu 0 313 1 355 188 0 0 chr1 217774772 217774836 -24889517 + MER58 DNA MER1_type 2357 2420 0 1822 138 3 7 chr1 217775943 217776225 -24888128 + AluJo SINE Alu 14 294 -18 1029 210 44 16 chr1 217776341 217776593 -24887760 - MER20B DNA MER1_type -10 773 515 1777 160 0 3 chr1 217776657 217776950 -24887403 - AluJb SINE Alu -20 292 1 236 208 19 0 chr1 217777071 217777124 -24887229 - MER20B DNA MER1_type -343 440 387 4998 122 77 17 chr1 217777132 217777727 -24886626 - MER4D LTR ERV1 -8 895 233 1804 113 46 11 chr1 217777727 217778187 -24886166 - AluSx SINE Alu 0 312 1 4998 122 77 17 chr1 217778187 217778435 -24885918 - MER4D LTR ERV1 -670 233 1 917 257 41 0 chr1 217778435 217778671 -24885682 - MER20B DNA MER1_type -392 391 146 2895 131 54 81 chr1 217778675 217778733 -24885620 + MER4B LTR ERV1 1 59 -551 2234 110 0 0 chr1 217778733 217779043 -24885310 - AluSx SINE Alu -2 310 1 2895 131 54 81 chr1 217779043 217779303 -24885050 + MER4B LTR ERV1 59 298 -312 2122 118 0 0 chr1 217779303 217779599 -24884754 - AluSx SINE Alu -16 296 1 2895 131 54 81 chr1 217779599 217779869 -24884484 + MER4B LTR ERV1 298 574 -36 241 196 0 0 chr1 217779900 217779946 -24884407 + MER20B DNA MER1_type 387 432 -351 445 78 31 0 chr1 217779969 217780033 -24884320 + MER4E LTR ERV1 714 779 0 343 244 67 11 chr1 217780062 217780152 -24884201 - MER20B DNA MER1_type -686 97 3 264 122 0 0 chr1 217780257 217780298 -24884055 + (T)n Simple_repeat Simple_repeat 1 41 0 4103 128 148 33 chr1 217780367 217781695 -24882658 + pTR5 LTR ERV1 741 2606 0 310 335 144 4 chr1 217781700 217781936 -24882417 - L2 LINE L2 -138 3175 2907 932 262 48 56 chr1 217781968 217782314 -24882039 + L2 LINE L2 2920 3264 -49 1919 146 0 3 chr1 217782314 217782616 -24881737 + AluSx SINE Alu 1 301 -11 932 262 48 56 chr1 217782616 217782662 -24881691 + L2 LINE L2 3264 3309 -4 608 333 151 26 chr1 217782658 217783081 -24881272 - L2 LINE L2 -444 2870 2395 * 212 279 147 0 chr1 217783543 217783611 -24880742 + L2 LINE L2 3200 3277 -36 207 182 0 0 chr1 217784044 217784077 -24880276 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 788 126 0 8 chr1 217784105 217784224 -24880129 + FLAM_C SINE Alu 1 118 -15 37 23 0 0 chr1 217784224 217784268 -24880085 + AT_rich Low_complexity Low_complexity 1 44 0 180 271 71 29 chr1 217784271 217784341 -24880012 + MIR SINE MIR 180 252 -10 1918 152 0 0 chr1 217784359 217784655 -24879698 + AluJb SINE Alu 1 296 -16 392 322 141 0 chr1 217788161 217788310 -24876043 + MIR SINE MIR 20 189 -73 312 91 0 0 chr1 217788695 217788739 -24875614 + (CA)n Simple_repeat Simple_repeat 2 45 0 323 229 36 0 chr1 217789382 217789465 -24874888 + L2 LINE L2 3186 3271 -1 2034 118 14 3 chr1 217789814 217790111 -24874242 + AluSx SINE Alu 1 300 -12 527 294 121 39 chr1 217791154 217791436 -24872917 + HAL1 LINE L1 2099 2403 -104 2333 256 72 26 chr1 217791542 217791986 -24872367 + L1ME3A LINE L1 5114 5536 -634 3402 123 39 16 chr1 217791986 217792500 -24871853 + MER1A DNA MER1_type 1 526 -1 2026 132 3 7 chr1 217792502 217792812 -24871541 - AluSx SINE Alu -3 309 1 2333 256 72 26 chr1 217792812 217793350 -24871003 + L1ME3A LINE L1 5536 6138 -32 1926 107 0 0 chr1 217793379 217793640 -24870713 - AluSx SINE Alu -24 288 28 215 175 32 32 chr1 217794062 217794125 -24870228 + (TA)n Simple_repeat Simple_repeat 1 63 0 3983 189 61 17 chr1 217795314 217795828 -24868525 - L1ME2 LINE L1 -24 6140 5650 2133 124 70 45 chr1 217795828 217795903 -24868450 - THE1B LTR MaLR 0 364 292 2135 107 0 29 chr1 217795903 217796213 -24868140 + AluSx SINE Alu 1 301 -11 2133 124 70 45 chr1 217796213 217796492 -24867861 - THE1B LTR MaLR -72 292 1 12482 82 6 1 chr1 217796492 217798064 -24866289 - THE1B-int LTR MaLR 0 1580 1 2113 116 98 15 chr1 217798064 217798400 -24865953 - THE1B LTR MaLR 0 364 1 3983 189 61 17 chr1 217798400 217798962 -24865391 - L1ME2 LINE L1 -513 5651 5006 234 319 0 0 chr1 217799215 217799287 -24865066 - MIR SINE MIR -10 252 181 614 126 11 0 chr1 217999287 217999382 -24664971 - AluS SINE Alu -216 96 1 913 135 0 0 chr1 217999561 217999694 -24664659 + AluSg/x SINE Alu 147 279 -33 216 0 0 0 chr1 217999702 217999726 -24664627 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2084 108 0 3 chr1 217999736 218000022 -24664331 + AluSq SINE Alu 1 285 -28 356 59 20 0 chr1 218000022 218000073 -24664280 + (TA)n Simple_repeat Simple_repeat 2 53 0 473 262 24 60 chr1 218000365 218000533 -24663820 - MIR SINE MIR -32 230 69 4986 36 2 0 chr1 218000673 218001250 -24663103 + LTR10C LTR ERV1 14 591 0 2163 113 0 0 chr1 218002008 218002309 -24662044 + AluSx SINE Alu 1 301 -11 289 263 88 0 chr1 218002428 218002542 -24661811 + LTR33 LTR ERVL 2 125 -396 255 258 84 70 chr1 218002941 218003021 -24661332 + L1M4 LINE L1 4533 4610 -1536 1542 169 3 45 chr1 218003021 218003334 -24661019 + AluJo SINE Alu 1 300 -12 255 258 84 70 chr1 218003334 218003551 -24660802 + L1M4 LINE L1 4610 4834 -1312 1736 144 39 20 chr1 218004424 218004729 -24659624 - AluJb SINE Alu -1 311 1 2145 114 3 0 chr1 218005415 218005714 -24658639 + AluSg SINE Alu 1 300 -10 381 300 146 18 chr1 218006389 218006609 -24657744 + MIR SINE MIR 14 261 -1 1779 206 126 60 chr1 218006727 218006767 -24657586 - MLT1E2 LTR MaLR -9 617 581 983 229 23 103 chr1 218006767 218007164 -24657189 + MLT1A1 LTR MaLR 1 365 0 1779 206 126 60 chr1 218007164 218007719 -24656634 - MLT1E2 LTR MaLR -45 581 1 1070 98 12 12 chr1 218007751 218007914 -24656439 - AluY SINE Alu -17 294 132 1861 133 7 3 chr1 218008026 218008320 -24656033 - AluSx SINE Alu -17 295 1 297 0 0 0 chr1 218008360 218008393 -24655960 + (CA)n Simple_repeat Simple_repeat 1 33 0 590 115 0 0 chr1 218008589 218008667 -24655686 + AluJ/FLAM SINE Alu 2 79 -233 2024 120 3 3 chr1 218009989 218010289 -24654064 + AluSx SINE Alu 1 300 -12 4034 97 32 58 chr1 218011296 218011957 -24652396 + LTR9B LTR ERV1 1 644 0 616 234 76 35 chr1 218012058 218012229 -24652124 + MLT1K LTR MaLR 395 572 -16 289 308 66 50 chr1 218012374 218012556 -24651797 - MER5A DNA MER1_type -3 186 2 257 325 25 33 chr1 218012879 218012999 -24651354 - MIR SINE MIR -124 138 20 4844 96 43 36 chr1 218013241 218013592 -24650761 + MER4E LTR ERV1 1 348 -431 2120 107 0 7 chr1 218013592 218013890 -24650463 - AluSg SINE Alu -14 296 1 4844 96 43 36 chr1 218013890 218014312 -24650041 + MER4E LTR ERV1 348 779 0 206 250 156 38 chr1 218014483 218014643 -24649710 - L2 LINE L2 -3 3310 3132 412 289 180 28 chr1 218015152 218015363 -24648990 - L1MC/D LINE L1 -438 5683 5532 327 271 93 28 chr1 218015529 218015636 -24648717 - MIR SINE MIR -74 188 75 1806 223 37 41 chr1 218015866 218016329 -24648024 + MLT1E3 LTR MaLR 161 621 -3 1002 160 0 6 chr1 218016471 218016646 -24647707 + FRAM SINE Alu 1 171 -5 376 286 0 0 chr1 218017893 218017984 -24646369 + MIR SINE MIR 64 154 -108 611 246 34 29 chr1 218018209 218018384 -24645969 - MER5B DNA MER1_type 0 178 3 315 122 0 0 chr1 218018952 218019001 -24645352 + (TG)n Simple_repeat Simple_repeat 2 50 0 675 206 174 0 chr1 218019576 218019731 -24644622 + L2 LINE L2 3118 3299 -14 585 144 0 0 chr1 218019735 218019839 -24644514 + (GGGA)n Simple_repeat Simple_repeat 4 107 0 245 253 35 106 chr1 218019839 218020009 -24644344 + MIR3 SINE MIR 19 176 -32 1325 234 56 36 chr1 218020474 218020919 -24643434 - LTR37B LTR ERV1 0 468 15 2046 119 0 3 chr1 218020922 218021216 -24643137 - AluSq SINE Alu -20 293 1 1455 75 0 0 chr1 218021830 218022018 -24642335 - AluSg/x SINE Alu -4 308 121 695 201 190 55 chr1 218022236 218022729 -24641624 - MLT1E2 LTR MaLR -88 538 1 2004 78 10 49 chr1 218022761 218022923 -24641430 - AluY SINE Alu -17 294 148 2598 32 0 3 chr1 218022923 218023235 -24641118 - AluY SINE Alu 0 311 1 2004 78 10 49 chr1 218023235 218023378 -24640975 - AluY SINE Alu -163 148 1 2087 74 57 0 chr1 218023887 218024170 -24640183 + AluSc SINE Alu 1 299 -10 229 238 79 8 chr1 218024207 218024333 -24640020 - L1MCa LINE L1 -3961 2465 2331 2040 122 0 20 chr1 218024566 218024886 -24639467 - AluSx SINE Alu 0 314 1 736 219 143 38 chr1 218024945 218025260 -24639093 - MER7A DNA MER2_type 0 346 1 2012 134 0 6 chr1 218025322 218025636 -24638717 - AluJb SINE Alu 0 312 1 1070 88 25 13 chr1 218025735 218025894 -24638459 - L1MC1 LINE L1 -318 6015 5855 459 215 60 106 chr1 218025874 218026158 -24638195 - L1M4 LINE L1 -1420 4726 4456 * 460 325 48 10 chr1 218026187 218026600 -24637753 - L1M4 LINE L1 -2685 3461 3033 422 181 114 54 chr1 218026653 218026819 -24637534 - L1MC5 LINE L1 -35 7926 7751 616 228 72 47 chr1 218026831 218027107 -24637246 - L1MC5 LINE L1 -299 7662 7380 2094 143 3 10 chr1 218027109 218027417 -24636936 + MER1B DNA MER1_type 34 339 0 412 200 44 0 chr1 218027417 218027507 -24636846 - L1MC5 LINE L1 -575 7386 7293 742 194 21 34 chr1 218027510 218027771 -24636582 + L1ME1 LINE L1 5255 5503 -2282 2150 186 29 88 chr1 218027796 218028098 -24636255 + L1ME1 LINE L1 5414 5661 -505 2097 132 3 0 chr1 218028098 218028409 -24635944 - AluSx SINE Alu 0 312 1 2150 186 29 88 chr1 218028409 218028731 -24635622 + L1ME1 LINE L1 5661 6001 -165 1919 192 16 0 chr1 218028764 218029087 -24635266 + MLT1A1 LTR MaLR 38 365 0 538 189 83 15 chr1 218029093 218029225 -24635128 + L1MA10 LINE L1 6176 6316 -18 1751 221 143 37 chr1 218029225 218029791 -24634562 + MLT1E2 LTR MaLR 1 626 0 395 201 30 104 chr1 218029821 218029955 -24634398 - L1MC5 LINE L1 -653 7308 7185 221 306 0 0 chr1 218030039 218030088 -24634265 - L3 LINE CR1 -282 1295 1247 832 224 42 42 chr1 218030089 218030397 -24633956 - L1MC5 LINE L1 -29 7932 7625 1628 172 41 0 chr1 218030427 218030718 -24633635 - AluJb SINE Alu -9 303 1 781 118 12 51 chr1 218032000 218032149 -24632204 - MLT1A1 LTR MaLR -2 386 239 288 223 54 80 chr1 218032193 218032305 -24632048 - MIR SINE MIR -53 209 101 1389 107 5 5 chr1 218032357 218032553 -24631800 + AluSx SINE Alu 1 196 -116 555 152 74 81 chr1 218032674 218032762 -24631591 - MLT1A1 LTR MaLR -183 191 104 2191 107 7 0 chr1 218032762 218033072 -24631281 - AluSq SINE Alu -1 312 1 555 152 74 81 chr1 218033072 218033149 -24631204 - MLT1A1 LTR MaLR -270 104 1 617 268 113 0 chr1 218033372 218033540 -24630813 - MIR SINE MIR -15 247 61 1666 184 0 7 chr1 218033755 218034048 -24630305 - AluJo SINE Alu -17 295 5 276 77 0 0 chr1 218034905 218034944 -24629409 + (CTG)n Simple_repeat Simple_repeat 2 40 0 702 295 54 45 chr1 218035013 218035345 -24629008 + L1MEc LINE L1 37 371 -6025 1511 202 60 29 chr1 218035361 218035568 -24628785 + L1ME2 LINE L1 4770 4969 -1177 2546 99 34 0 chr1 218035568 218035920 -24628433 - THE1B LTR MaLR 0 364 1 1511 202 60 29 chr1 218035920 218036128 -24628225 + L1ME2 LINE L1 4969 5198 -948 29932 116 18 66 chr1 218036128 218039527 -24624826 + L1PA8 LINE L1 2 2946 -3226 2170 98 7 0 chr1 218039527 218039824 -24624529 + AluSg SINE Alu 1 299 -11 29932 116 18 66 chr1 218039824 218042808 -24621545 + L1PA8 LINE L1 2946 6071 -101 835 57 0 40 chr1 218044597 218044721 -24619632 + L1PA8 LINE L1 6052 6170 -2 1538 218 77 36 chr1 218044727 218045115 -24619238 + L1ME2 LINE L1 5185 5663 -503 1726 96 55 38 chr1 218045115 218045406 -24618947 + AluSx SINE Alu 1 296 -16 1538 218 77 36 chr1 218045406 218045625 -24618728 + L1ME2 LINE L1 5663 5872 -294 1195 136 5 10 chr1 218045629 218045828 -24618525 + L1MA9 LINE L1 6114 6311 -1 2232 97 3 0 chr1 218045953 218046252 -24618101 + AluSp SINE Alu 1 300 -13 1062 212 50 17 chr1 218046360 218046658 -24617695 + L1ME2 LINE L1 5859 6333 -1 415 229 55 0 chr1 218046713 218046822 -24617531 + MIR SINE MIR 89 203 -59 198 274 167 0 chr1 218047945 218048029 -24616324 + MIR SINE MIR 2 99 -163 849 286 96 66 chr1 218048032 218048337 -24616016 + L2 LINE L2 2867 3190 -123 1490 187 0 17 chr1 218048337 218048670 -24615683 + AluJb SINE Alu 1 312 0 849 286 96 66 chr1 218048670 218048790 -24615563 + L2 LINE L2 3190 3305 -8 511 224 62 37 chr1 218048795 218048956 -24615397 + MIR SINE MIR 98 262 0 777 279 22 45 chr1 218049437 218049659 -24614694 + MIR SINE MIR 6 222 -40 1878 117 60 0 chr1 218049659 218049941 -24614412 - AluSx SINE Alu -13 299 1 201 224 35 35 chr1 218049985 218050043 -24614310 + L2 LINE L2 3214 3271 -1 282 180 20 0 chr1 218050102 218050152 -24614201 - AluJb SINE Alu -129 173 123 263 132 13 118 chr1 218051566 218051642 -24612711 + MER57A LTR ERV1 295 362 -41 2110 98 7 36 chr1 218051805 218052110 -24612243 - AluSx SINE Alu -16 296 1 2006 120 6 60 chr1 218052684 218052871 -24611482 - AluSx SINE Alu -12 300 135 2167 127 0 0 chr1 218052871 218053170 -24611183 - AluSx SINE Alu -13 299 1 2006 120 6 60 chr1 218053170 218053299 -24611054 - AluSx SINE Alu -177 135 1 213 204 0 0 chr1 218053532 218053576 -24610777 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 292 356 39 10 chr1 218053578 218053682 -24610671 - L2 LINE L2 -32 3240 3134 473 342 60 22 chr1 218053902 218054221 -24610132 - L2 LINE L2 -654 2660 2330 534 282 92 20 chr1 218054239 218054434 -24609919 + MER3 DNA MER1_type 1 209 0 * 753 217 89 0 chr1 218054286 218054443 -24609910 - MER3 DNA MER1_type 0 209 39 742 227 0 0 chr1 218054479 218054607 -24609746 + AluJo SINE Alu 1 128 -184 2237 105 3 0 chr1 218054619 218054914 -24609439 + AluSp SINE Alu 3 298 -15 973 189 6 11 chr1 218054935 218055115 -24609238 + AluJo SINE Alu 121 299 -13 752 305 73 6 chr1 218055167 218055521 -24608832 - L2 LINE L2 -1135 2179 1802 180 321 74 25 chr1 218055750 218055831 -24608522 - L2 LINE L2 -494 2820 2736 271 282 42 0 chr1 218055979 218056050 -24608303 - L2 LINE L2 -568 2746 2673 1672 181 33 10 chr1 218056067 218056370 -24607983 - MER58B DNA MER1_type -30 311 2 250 371 114 0 chr1 218056516 218056621 -24607732 - L2 LINE L2 -23 3249 3133 1784 171 0 7 chr1 218056741 218057027 -24607326 + AluJo SINE Alu 12 295 -17 891 243 254 11 chr1 218057304 218057682 -24606671 + L2 LINE L2 2804 3273 -40 4266 90 4 4 chr1 218058745 218059301 -24605052 + L1PA14 LINE L1 5606 6161 0 1914 254 159 3 chr1 218059360 218060190 -24604163 + L2 LINE L2 2330 3313 0 2338 77 3 3 chr1 218060262 218060559 -24603794 - AluSq SINE Alu -14 299 3 332 177 0 0 chr1 218061041 218061103 -24603250 - L1MB4 LINE L1 -1 6179 6118 43 47 0 0 chr1 218061686 218061750 -24602603 + GC_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr1 218061853 218061885 -24602468 + GC_rich Low_complexity Low_complexity 1 32 0 204 40 0 0 chr1 218061928 218061953 -24602400 + (CCG)n Simple_repeat Simple_repeat 2 26 0 525 230 123 64 chr1 218063565 218063800 -24600553 + MIR SINE MIR 2 250 -12 554 98 0 0 chr1 218064109 218064191 -24600162 - L1MB4 LINE L1 -2 6178 6097 2221 87 21 0 chr1 218064270 218064557 -24599796 + AluSc SINE Alu 1 293 -16 27 0 0 0 chr1 218065148 218065175 -24599178 + AT_rich Low_complexity Low_complexity 1 27 0 803 172 110 0 chr1 218065282 218065445 -24598908 + MER3 DNA MER1_type 29 209 0 2139 60 21 102 chr1 218065502 218065836 -24598517 + AluSx SINE Alu 1 307 -5 1924 91 33 18 chr1 218066467 218066766 -24597587 - AluSg1 SINE Alu 0 305 3 225 212 0 45 chr1 218067584 218067650 -24596703 - MER99 DNA DNA -636 192 130 1950 107 35 35 chr1 218067791 218068081 -24596272 - AluSx SINE Alu -22 290 1 336 357 116 0 chr1 218068362 218068561 -24595792 - MIR SINE MIR -20 242 21 186 167 0 0 chr1 218068698 218068734 -24595619 + A-rich Low_complexity Low_complexity 1 36 0 558 114 13 0 chr1 218069016 218069095 -24595258 + MADE1 DNA Mariner 1 80 0 402 287 164 66 chr1 218069429 218069868 -24594485 - L2 LINE L2 -3 3310 2829 29 0 0 0 chr1 218070100 218070129 -24594224 + AT_rich Low_complexity Low_complexity 1 29 0 438 325 40 0 chr1 218071913 218072039 -24592314 + L2 LINE L2 3142 3272 0 215 152 0 0 chr1 218073338 218073371 -24590982 + L2 LINE L2 2717 2749 -565 598 285 0 0 chr1 218073394 218073524 -24590829 - MER5A DNA MER1_type -58 131 2 318 265 161 37 chr1 218073525 218073847 -24590506 + L2 LINE L2 2742 3117 -196 26 30 0 0 chr1 218076105 218076138 -24588215 + AT_rich Low_complexity Low_complexity 1 33 0 333 0 0 0 chr1 218076221 218076258 -24588095 + (TA)n Simple_repeat Simple_repeat 2 38 0 1676 176 0 47 chr1 218076316 218076635 -24587718 - AluJo SINE Alu -5 307 4 2330 59 3 3 chr1 218076636 218076922 -24587431 - AluY SINE Alu -25 286 1 249 308 73 38 chr1 218077091 218077388 -24586965 - L1ME LINE L1 -359 5762 5450 1535 130 30 4 chr1 218077388 218077618 -24586735 + MER46A DNA MER2_type 1 236 0 249 308 73 38 chr1 218077618 218077661 -24586692 - L1ME LINE L1 -671 5450 5410 1361 173 102 26 chr1 218078428 218078694 -24585659 - AluJb SINE Alu -26 286 1 2227 135 41 0 chr1 218078752 218079116 -24585237 - L1MB7 LINE L1 -24 6160 5782 349 192 30 61 chr1 218079367 218079466 -24584887 - L1ME4a LINE L1 -80 6041 5946 1730 299 165 45 chr1 218080037 218081036 -24583317 + L2 LINE L2 1618 2496 -817 1323 164 23 0 chr1 218081036 218081256 -24583097 - L1MB7 LINE L1 -19 6165 5941 1730 299 165 45 chr1 218081256 218081307 -24583046 + L2 LINE L2 2496 2539 -774 846 196 69 17 chr1 218081307 218081480 -24582873 + MER5A DNA MER1_type 4 185 -4 1730 299 165 45 chr1 218081480 218081715 -24582638 + L2 LINE L2 2539 3058 -255 816 259 32 0 chr1 218081737 218081953 -24582400 + LTR33 LTR ERVL 1 223 -298 516 152 22 11 chr1 218082369 218082461 -24581892 + MIR SINE MIR 50 142 -120 1242 248 93 30 chr1 218082481 218082683 -24581670 - L2 LINE L2 -16 3297 3109 252 0 0 0 chr1 218082683 218082711 -24581642 + (TG)n Simple_repeat Simple_repeat 2 29 0 1242 248 93 30 chr1 218082711 218083011 -24581342 - L2 LINE L2 -204 3109 2765 500 125 0 11 chr1 218083052 218083140 -24581213 - L1PA11 LINE L1 -2 6172 6086 395 308 9 0 chr1 218083150 218083257 -24581096 - MIR SINE MIR -63 145 38 1622 193 27 10 chr1 218085053 218085354 -24578999 - AluJb SINE Alu -6 306 1 2241 79 0 69 chr1 218085524 218085842 -24578511 + AluSx SINE Alu 1 296 -16 917 336 75 31 chr1 218087329 218087933 -24576420 + L2 LINE L2 2681 3313 0 200 298 0 0 chr1 218087958 218088015 -24576338 + L2 LINE L2 1365 1421 -1893 2530 60 0 0 chr1 218088033 218088333 -24576020 - AluY SINE Alu -11 300 1 1741 129 57 7 chr1 218088538 218088818 -24575535 - AluSp SINE Alu -15 298 5 189 0 0 0 chr1 218088826 218088847 -24575506 + (TG)n Simple_repeat Simple_repeat 2 22 0 894 117 0 0 chr1 218088847 218088967 -24575386 - AluSg SINE Alu -190 120 1 420 95 95 0 chr1 218088968 218089031 -24575322 + MSTA LTR MaLR 360 428 0 184 267 123 96 chr1 218089031 218089177 -24575176 + MIR SINE MIR 107 256 -6 328 255 92 35 chr1 218089414 218089555 -24574798 + L2 LINE L2 3123 3271 -1 292 261 42 70 chr1 218090235 218090377 -24573976 - MIR SINE MIR -78 184 47 186 133 0 0 chr1 218090519 218090549 -24573804 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 1995 154 0 7 chr1 218090573 218090872 -24573481 - AluJb SINE Alu -15 297 1 333 250 0 0 chr1 218090899 218090983 -24573370 - L1MA9 LINE L1 -40 6272 6189 * 414 316 110 11 chr1 218090982 218091254 -24573099 - L1MC/D LINE L1 -2193 5615 5317 324 367 113 7 chr1 218091458 218091608 -24572745 - L2 LINE L2 -4 3268 3103 2224 110 51 15 chr1 218091722 218092058 -24572295 - MER7A DNA MER2_type 0 346 1 27 49 0 0 chr1 218092912 218092953 -24571400 + AT_rich Low_complexity Low_complexity 1 41 0 357 309 196 45 chr1 218093624 218094652 -24569701 - L2 LINE L2 -1579 1735 552 1930 104 6 82 chr1 218094761 218094897 -24569456 + AluSx SINE Alu 1 146 -166 2101 96 7 14 chr1 218094897 218095190 -24569163 + AluSc SINE Alu 1 291 -18 1930 104 6 82 chr1 218095190 218095369 -24568984 + AluSx SINE Alu 146 292 -20 404 289 69 19 chr1 218095431 218095590 -24568763 - MIR3 SINE MIR 0 208 42 200 197 0 49 chr1 218095673 218095734 -24568619 + T-rich Low_complexity Low_complexity 3 60 0 2165 124 3 0 chr1 218097633 218097931 -24566422 + AluSp SINE Alu 1 299 -14 2232 120 0 0 chr1 218098162 218098471 -24565882 - AluSx SINE Alu 0 312 4 450 205 60 0 chr1 218098586 218098669 -24565684 + FLAM_A SINE Alu 30 117 -25 1412 214 62 22 chr1 218098679 218099201 -24565152 - L1ME LINE L1 -550 5616 5116 2340 76 0 57 chr1 218099201 218099517 -24564836 - AluSx SINE Alu -14 298 1 1412 214 62 22 chr1 218099517 218100370 -24563983 - L1ME LINE L1 -1050 5116 4071 2222 110 0 0 chr1 218100925 218101217 -24563136 - AluSx SINE Alu -20 292 1 1064 197 39 5 chr1 218101809 218102012 -24562341 - MER58A DNA MER1_type -14 210 1 492 214 191 8 chr1 218102254 218102385 -24561968 - MER5A DNA MER1_type 0 189 35 519 161 0 0 chr1 218102490 218102577 -24561776 - FLAM_A SINE Alu -12 130 44 681 265 47 51 chr1 218102824 218103058 -24561295 - MIR SINE MIR -12 250 18 375 198 198 16 chr1 218103146 218103272 -24561081 - MER5B DNA MER1_type -10 168 20 691 154 8 17 chr1 218103634 218103751 -24560602 - FLAM_A SINE Alu -20 122 7 2033 127 19 13 chr1 218107145 218107452 -24556901 - AluJb SINE Alu 0 312 4 901 126 0 0 chr1 218108492 218108619 -24555734 + FLAM_C SINE Alu 2 128 -5 2066 118 0 7 chr1 218108682 218108962 -24555391 - AluSg SINE Alu -24 286 9 278 273 0 11 chr1 218110061 218110149 -24554204 - L1MC4 LINE L1 -1336 6706 6620 2160 91 28 0 chr1 218110167 218110452 -24553901 + AluSp SINE Alu 1 293 -20 27 0 0 0 chr1 218111135 218111162 -24553191 + AT_rich Low_complexity Low_complexity 1 27 0 266 291 43 60 chr1 218112324 218112441 -24551912 + MIR3 SINE MIR 1 115 -93 425 184 353 22 chr1 218113846 218113982 -24550371 + MIR SINE MIR 13 193 -69 325 200 38 0 chr1 218114237 218114317 -24550036 + L1ME3A LINE L1 6082 6164 -6 320 157 0 0 chr1 218114598 218114649 -24549704 - Alu SINE Alu -9 292 242 373 200 12 0 chr1 218115836 218115921 -24548432 + MER103 DNA DNA 79 164 -2 22 0 0 0 chr1 218116010 218116032 -24548321 + AT_rich Low_complexity Low_complexity 1 22 0 863 177 0 0 chr1 218116590 218116731 -24547622 - FLAM_C SINE Alu -2 141 1 1753 176 20 7 chr1 218116971 218117267 -24547086 + AluJb SINE Alu 1 300 -12 576 165 0 0 chr1 218117295 218117392 -24546961 - AluSg/x SINE Alu -5 307 211 2145 126 29 45 chr1 218118082 218118463 -24545890 + THE1C LTR MaLR 1 375 0 29 47 0 0 chr1 218118547 218118590 -24545763 + AT_rich Low_complexity Low_complexity 1 43 0 891 286 71 24 chr1 218118988 218119646 -24544707 - L1ME3A LINE L1 -223 5947 5259 362 244 189 6 chr1 218119660 218119840 -24544513 - L1ME3A LINE L1 -900 5246 5034 226 172 92 69 chr1 218119840 218119927 -24544426 - L1 LINE L1 -1134 5012 4924 1752 220 37 26 chr1 218119928 218120418 -24543935 - MLT1D LTR MaLR -10 495 1 440 276 155 63 chr1 218120421 218120804 -24543549 - L1 LINE L1 -1221 4925 4508 476 228 16 31 chr1 218120804 218120997 -24543356 - L1 LINE L1 -2163 3983 3794 1221 289 70 13 chr1 218120997 218121656 -24542697 - L2 LINE L2 -4 3309 2616 325 324 40 7 chr1 218121820 218121968 -24542385 + L1M4 LINE L1 3524 3676 -2470 2892 110 36 67 chr1 218122194 218122750 -24541603 + LTR9B LTR ERV1 106 644 0 550 234 76 35 chr1 218122851 218123022 -24541331 + MLT1K LTR MaLR 395 572 -16 222 118 0 0 chr1 218123325 218123359 -24540994 + (CA)n Simple_repeat Simple_repeat 1 34 0 208 311 66 66 chr1 218124244 218124350 -24540003 - L2 LINE L2 -6 3266 3161 639 202 112 19 chr1 218124369 218124602 -24539751 - AluJb SINE Alu -14 298 1 283 233 194 0 chr1 218124882 218124985 -24539368 + L2 LINE L2 2321 2443 -871 514 290 97 47 chr1 218125659 218126124 -24538229 - L1MEd LINE L1 -5285 834 347 814 339 33 25 chr1 218126225 218126620 -24537733 - MLT1E LTR MaLR -174 419 22 553 325 94 48 chr1 218127743 218128281 -24536072 - L2 LINE L2 -1 3271 2716 204 257 86 14 chr1 218128372 218128442 -24535911 - L2 LINE L2 0 3313 3239 2176 106 0 26 chr1 218128940 218129252 -24535101 - AluSq SINE Alu -9 304 1 186 213 64 0 chr1 218129283 218129330 -24535023 + MIR SINE MIR 100 149 -113 5631 97 27 1 chr1 218129389 218130254 -24534099 - L1PA14 LINE L1 0 6161 5275 879 218 0 29 chr1 218130325 218130499 -24533854 + FAM SINE Alu 4 172 -3 206 128 26 0 chr1 218130521 218130560 -24533793 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 222 118 0 0 chr1 218130720 218130754 -24533599 + (CA)n Simple_repeat Simple_repeat 1 34 0 208 311 66 66 chr1 218131638 218131744 -24532609 - L2 LINE L2 -6 3266 3161 734 184 110 22 chr1 218131754 218131999 -24532354 - AluJb SINE Alu -2 310 1 375 348 143 18 chr1 218132008 218132461 -24531892 - L2 LINE L2 -112 3201 2648 982 236 116 10 chr1 218132555 218132848 -24531505 - MLT1C LTR MaLR 0 467 144 271 357 54 0 chr1 218133797 218133909 -24530444 + MER5B DNA MER1_type 1 118 -60 310 254 175 0 chr1 218134587 218134701 -24529652 - L1ME4a LINE L1 -4 6117 5984 400 320 165 48 chr1 218135250 218135809 -24528544 - L3 LINE CR1 -10 1567 944 440 278 47 24 chr1 218135820 218135989 -24528364 + LTR33 LTR ERVL 1 173 -348 400 223 101 36 chr1 218136066 218136111 -24528242 + LTR33 LTR ERVL 372 413 -108 2097 153 60 24 chr1 218136111 218136127 -24528226 - MSTB1 LTR MaLR 0 432 418 348 24 0 0 chr1 218136127 218136168 -24528185 + (TG)n Simple_repeat Simple_repeat 2 42 0 2097 153 60 24 chr1 218136168 218136418 -24527935 - MSTB1 LTR MaLR -14 418 143 2279 95 0 3 chr1 218136418 218136712 -24527641 + AluSq SINE Alu 5 297 -16 2097 153 60 24 chr1 218136712 218136861 -24527492 - MSTB1 LTR MaLR -289 143 1 400 223 101 36 chr1 218136861 218136954 -24527399 + LTR33 LTR ERVL 413 519 -2 378 287 57 68 chr1 218136971 218137041 -24527312 - L3 LINE CR1 -655 922 853 2107 107 3 0 chr1 218137041 218137353 -24527000 - AluSg SINE Alu 0 310 1 378 287 57 68 chr1 218137353 218137547 -24526806 - L3 LINE CR1 -724 853 661 425 300 163 18 chr1 218137555 218137782 -24526571 + MIR SINE MIR 2 261 -1 2146 136 0 0 chr1 218138207 218138508 -24525845 - AluSx SINE Alu -11 301 1 1434 187 24 41 chr1 218138639 218138933 -24525420 - AluJo SINE Alu -6 306 18 2247 128 7 0 chr1 218138984 218139290 -24525063 - AluSx SINE Alu -4 308 1 327 260 13 13 chr1 218140548 218140625 -24523728 - L3 LINE CR1 -943 634 558 2330 100 3 7 chr1 218140951 218141333 -24523020 + AluSg SINE Alu 1 381 0 518 239 137 9 chr1 218142246 218142530 -24521823 - MLT1I LTR MaLR -3 406 35 243 254 0 0 chr1 218143262 218143317 -24521036 + (CA)n Simple_repeat Simple_repeat 2 56 0 183 129 0 0 chr1 218144761 218144792 -24519561 + (TTG)n Simple_repeat Simple_repeat 2 32 0 508 242 56 110 chr1 218145257 218145303 -24519050 + MLT1H LTR MaLR 62 109 -433 2287 72 0 69 chr1 218145303 218145636 -24518717 + AluY SINE Alu 1 310 -1 508 242 56 110 chr1 218145636 218145923 -24518430 + MLT1H LTR MaLR 109 375 -167 415 329 134 32 chr1 218146059 218146411 -24517942 - L2 LINE L2 -439 2875 2444 2124 148 0 0 chr1 218146411 218146715 -24517638 + AluSc SINE Alu 1 304 -5 415 329 134 32 chr1 218146715 218146921 -24517432 - L2 LINE L2 -870 2444 2260 689 255 30 69 chr1 218147644 218147875 -24516478 - MIR SINE MIR -13 249 28 423 227 125 0 chr1 218148168 218148296 -24516057 - LTR33 LTR ERVL 0 521 378 2163 94 0 21 chr1 218148488 218148799 -24515554 - AluSg SINE Alu 0 305 1 530 278 128 32 chr1 218149039 218149320 -24515033 + L2 LINE L2 2995 3302 -11 3288 170 28 66 chr1 218149820 218149955 -24514398 + LTR39 LTR ERV1 59 198 -585 942 34 17 0 chr1 218149955 218150074 -24514279 + L1PA4 LINE L1 6034 6154 -1 3288 170 28 66 chr1 218150074 218150376 -24513977 + LTR39 LTR ERV1 198 457 -326 2124 141 0 0 chr1 218150376 218150675 -24513678 - AluSx SINE Alu -13 299 1 3288 170 28 66 chr1 218150675 218150989 -24513364 + LTR39 LTR ERV1 457 782 -1 477 293 48 7 chr1 218150996 218151143 -24513210 + MIR SINE MIR 46 198 -64 301 261 42 70 chr1 218152306 218152448 -24511905 + MIR SINE MIR 47 184 -78 339 255 92 35 chr1 218153131 218153272 -24511081 - L2 LINE L2 -1 3271 3123 233 250 125 144 chr1 218153509 218153655 -24510698 - MIR SINE MIR -6 256 109 2314 109 103 23 chr1 218153655 218153719 -24510634 - MSTA LTR MaLR 0 428 371 2128 119 34 0 chr1 218153719 218153839 -24510514 + AluSg SINE Alu 1 115 -195 189 0 0 0 chr1 218153839 218153860 -24510493 + (CA)n Simple_repeat Simple_repeat 2 22 0 2128 119 34 0 chr1 218153860 218154033 -24510320 + AluSg SINE Alu 115 304 -6 2314 109 103 23 chr1 218154033 218154364 -24509989 - MSTA LTR MaLR -57 371 1 233 250 125 144 chr1 218154364 218154473 -24509880 - MIR SINE MIR -153 109 6 1202 180 0 5 chr1 218155190 218155379 -24508974 - AluJo SINE Alu -124 188 1 1793 89 124 0 chr1 218155395 218155652 -24508701 - AluSx SINE Alu -23 289 1 1606 192 10 39 chr1 218157569 218157749 -24506604 - AluJo SINE Alu -9 303 119 249 33 0 0 chr1 218157749 218157779 -24506574 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1824 186 0 3 chr1 218157779 218158064 -24506289 - AluJb SINE Alu -28 284 1 1606 192 10 39 chr1 218158064 218158194 -24506159 - AluJo SINE Alu -191 121 1 203 204 19 0 chr1 218158241 218158295 -24506058 + (TA)n Simple_repeat Simple_repeat 1 55 0 769 235 15 0 chr1 218158295 218158431 -24505922 - FRAM SINE Alu -20 156 19 2295 103 3 0 chr1 218158463 218158753 -24505600 + AluSq SINE Alu 1 291 -22 2392 78 0 3 chr1 218158753 218159049 -24505304 + AluY SINE Alu 1 295 -16 468 51 0 0 chr1 218159052 218159111 -24505242 + (CA)n Simple_repeat Simple_repeat 2 60 0 343 216 272 2 chr1 218159455 218159649 -24504704 - L1ME3A LINE L1 -194 5970 5732 212 83 0 28 chr1 218159650 218159686 -24504667 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 242 295 39 0 chr1 218159809 218159887 -24504466 - L1ME3A LINE L1 -710 5464 5384 681 126 81 9 chr1 218159985 218160096 -24504257 + FLAM_C SINE Alu 1 119 -14 1714 88 160 8 chr1 218162919 218163169 -24501184 + AluSg SINE Alu 1 288 -22 1066 120 120 0 chr1 218163399 218163615 -24500738 - L1MA8 LINE L1 0 6291 6050 35 0 0 0 chr1 218164012 218164047 -24500306 + AT_rich Low_complexity Low_complexity 1 35 0 716 148 19 202 chr1 218166189 218166261 -24498092 - MER6B DNA MER2_type -655 210 127 761 196 0 0 chr1 218166261 218166394 -24497959 - FLAM_C SINE Alu 0 133 1 716 148 19 202 chr1 218166394 218166578 -24497775 - MER6B DNA MER2_type -738 127 1 917 265 134 52 chr1 218166588 218167086 -24497267 + MLT1E2 LTR MaLR 81 619 -7 250 287 23 23 chr1 218167087 218167174 -24497179 + MIR SINE MIR 50 136 -72 226 246 74 16 chr1 218167540 218167624 -24496729 - L1ME LINE L1 -199 5922 5827 2156 124 7 0 chr1 218167624 218167914 -24496439 - AluSx SINE Alu -20 292 1 226 246 74 16 chr1 218167914 218167951 -24496402 - L1ME LINE L1 -294 5827 5794 207 296 179 44 chr1 218168139 218168591 -24495762 - L2 LINE L2 -1210 2104 1592 383 221 42 11 chr1 218171230 218171325 -24493028 - MER5B DNA MER1_type -80 98 1 1074 151 15 35 chr1 218171619 218171789 -24492564 - AluJo SINE Alu -11 301 134 2174 124 3 16 chr1 218171789 218171966 -24492387 - AluSq SINE Alu -2 311 138 2215 101 3 17 chr1 218171966 218172262 -24492091 - AluSp SINE Alu -21 292 1 2174 124 3 16 chr1 218172262 218172399 -24491954 - AluSq SINE Alu -175 138 1 1074 151 15 35 chr1 218172399 218172427 -24491926 - AluJo SINE Alu -178 134 107 482 234 160 11 chr1 218174253 218174428 -24489925 + MLT1J LTR MaLR 35 235 -276 2087 121 0 3 chr1 218176253 218176542 -24487811 + AluSx SINE Alu 1 288 -24 8290 22 0 0 chr1 218176753 218178497 -24485856 + L1PA3 LINE L1 4420 6167 0 2335 80 3 17 chr1 218178688 218178987 -24485366 - AluSg SINE Alu -7 303 9 340 176 0 148 chr1 218179342 218179450 -24484903 + MER3 DNA MER1_type 1 92 -117 303 106 0 21 chr1 218179425 218179472 -24484881 + MER3 DNA MER1_type 164 209 0 * 1043 90 8 0 chr1 218180786 218180920 -24483433 + AluSq/x SINE Alu 1 135 -177 2184 142 0 10 chr1 218180920 218181230 -24483123 + AluSx SINE Alu 1 307 -5 468 230 10 0 chr1 218181599 218181699 -24482654 - MER5A DNA MER1_type -88 101 1 720 192 0 0 chr1 218181760 218181880 -24482473 - FRAM SINE Alu -56 120 1 937 163 0 0 chr1 218182551 218182686 -24481667 + AluJo SINE Alu 1 135 -177 1903 165 3 25 chr1 218182686 218183001 -24481352 + AluJo SINE Alu 1 308 -4 232 236 0 0 chr1 218186537 218186592 -24477761 + FLAM SINE Alu 67 121 -12 1956 149 10 7 chr1 218186689 218186990 -24477363 + AluJo SINE Alu 6 307 -5 2093 106 29 26 chr1 218187515 218187826 -24476527 + AluSx SINE Alu 1 312 0 232 235 221 0 chr1 218187836 218187904 -24476449 - MIR SINE MIR -84 124 42 188 255 0 0 chr1 218188527 218188574 -24475779 - MIR SINE MIR -81 127 81 392 262 87 27 chr1 218188654 218188803 -24475550 + MIR3 SINE MIR 30 187 -21 475 249 116 21 chr1 218189088 218189277 -24475076 + MER63A DNA MER1_type 1 207 -3 186 118 0 0 chr1 218190124 218190158 -24474195 + (TCC)n Simple_repeat Simple_repeat 1 34 0 899 192 126 0 chr1 218191107 218191305 -24473048 + MER58A DNA MER1_type 2 224 0 663 276 61 23 chr1 218191546 218191707 -24472646 + MIR SINE MIR 29 201 -61 2277 137 8 0 chr1 218191707 218192065 -24472288 - MER46B DNA MER2_type 0 236 1 663 276 61 23 chr1 218192065 218192117 -24472236 + MIR SINE MIR 201 250 -12 505 280 14 14 chr1 218193014 218193157 -24471196 + MIR SINE MIR 2 144 -118 1002 287 51 5 chr1 218195179 218195573 -24468780 + L1MC4 LINE L1 7631 8042 0 1954 142 18 0 chr1 218195695 218195977 -24468376 - AluJo SINE Alu -20 292 6 753 232 61 6 chr1 218196038 218196219 -24468134 - MIR SINE MIR -27 235 45 2145 214 99 12 chr1 218197844 218198432 -24465921 + LTR48B LTR ERV1 5 643 -1 2201 128 3 7 chr1 218198935 218199239 -24465114 + AluSx SINE Alu 1 303 -9 290 247 148 0 chr1 218199244 218199325 -24465028 - L3 LINE CR1 -7 1570 1478 1068 74 0 0 chr1 218200089 218200211 -24464142 - AluSq/x SINE Alu -175 137 16 1890 104 12 12 chr1 218200658 218200917 -24463436 - AluSx SINE Alu -15 297 39 1703 119 0 0 chr1 218200917 218201136 -24463217 - AluSx SINE Alu -93 219 1 1028 124 0 67 chr1 218202048 218202226 -24462127 + FRAM SINE Alu 1 166 -10 1874 166 3 13 chr1 218202894 218203196 -24461157 + AluJb SINE Alu 1 299 -13 339 250 57 11 chr1 218203197 218203285 -24461068 - L1MC4 LINE L1 -1339 6703 6612 782 130 16 0 chr1 218203300 218203423 -24460930 - AluSp/q SINE Alu -6 307 183 2076 81 0 0 chr1 218203524 218203772 -24460581 - AluSq SINE Alu -65 248 1 348 336 35 14 chr1 218203778 218203921 -24460432 + MIR SINE MIR 47 192 -70 592 214 202 11 chr1 218204056 218204234 -24460119 + MIR SINE MIR 13 224 -38 182 250 0 23 chr1 218204258 218204302 -24460051 - MIR SINE MIR -63 145 103 795 182 0 55 chr1 218204564 218204729 -24459624 + FRAM SINE Alu 2 157 -9 4118 79 11 35 chr1 218206264 218206832 -24457521 + MER41A LTR ERV1 1 554 0 579 163 0 10 chr1 218208085 218208181 -24456172 - MER47A DNA MER2_type -3 363 269 4443 148 25 42 chr1 218208181 218208561 -24455792 + MER4D LTR ERV1 1 386 -517 1479 64 133 0 chr1 218208561 218208764 -24455589 + MER30 DNA MER1_type 1 230 0 4443 148 25 42 chr1 218208764 218208983 -24455370 + MER4D LTR ERV1 386 607 -296 2273 115 3 10 chr1 218208983 218209297 -24455056 - AluSx SINE Alu 0 312 1 4443 148 25 42 chr1 218209297 218209615 -24454738 + MER4D LTR ERV1 607 903 0 1664 145 0 14 chr1 218209615 218209891 -24454462 - MER47A DNA MER2_type -94 272 1 182 316 74 32 chr1 218210034 218210129 -24454224 + L2 LINE L2 3169 3267 -5 919 251 130 27 chr1 218210386 218210756 -24453597 + MLT1G1 LTR MaLR 12 419 -176 355 248 89 13 chr1 218210730 218210887 -24453466 + MLT1F LTR MaLR 355 523 -19 * 931 101 148 101 chr1 218211527 218211736 -24452617 + MER20 DNA MER1_type 1 219 0 682 232 36 75 chr1 218213518 218213622 -24450731 - MIR SINE MIR -6 256 150 1563 104 0 48 chr1 218213622 218213852 -24450501 - AluY SINE Alu -17 294 76 682 232 36 75 chr1 218213852 218213975 -24450378 - MIR SINE MIR -112 150 33 1790 160 14 27 chr1 218214036 218214330 -24450023 - AluJb SINE Alu -22 290 1 899 180 62 10 chr1 218214426 218214620 -24449733 - MER3 DNA MER1_type 0 209 6 268 308 42 42 chr1 218214887 218215030 -24449323 - MIR3 SINE MIR -2 206 64 1711 141 30 50 chr1 218215672 218215969 -24448384 - AluJb SINE Alu -13 299 9 2017 179 30 2 chr1 218215970 218216367 -24447986 + L1MC3 LINE L1 7370 7777 -8 337 268 58 58 chr1 218216372 218216429 -24447924 + L1MDb LINE L1 1065 1121 -5288 2095 151 3 10 chr1 218216429 218216740 -24447613 + AluJo SINE Alu 2 310 -2 337 268 58 58 chr1 218216740 218216820 -24447533 + L1MDb LINE L1 1120 1202 -5207 449 224 170 32 chr1 218217116 218217274 -24447079 - MIR SINE MIR -29 179 54 388 226 153 40 chr1 218218136 218218313 -24446040 + MIR SINE MIR 8 204 -58 2120 123 7 7 chr1 218218401 218218710 -24445643 + AluJb SINE Alu 1 309 -3 294 29 0 0 chr1 218219185 218219220 -24445133 + (CA)n Simple_repeat Simple_repeat 1 35 0 2226 108 0 7 chr1 218219461 218219758 -24444595 - AluSx SINE Alu -12 300 6 232 209 0 0 chr1 218220157 218220200 -24444153 + MIR SINE MIR 118 160 -102 432 239 92 50 chr1 218221960 218222119 -24442234 - MIR3 SINE MIR -62 146 3 821 208 99 30 chr1 218222944 218223146 -24441207 + MIR SINE MIR 47 262 0 553 309 126 25 chr1 218223486 218223891 -24440462 + L2 LINE L2 1527 1972 -1342 337 306 20 0 chr1 218223956 218224054 -24440299 + MIR SINE MIR 57 156 -106 271 278 0 0 chr1 218224231 218224285 -24440068 + L2 LINE L2 3218 3271 -1 831 128 15 15 chr1 218224388 218224521 -24439832 - FLAM_C SINE Alu 0 133 1 352 213 0 27 chr1 218224597 218224672 -24439681 + L2 LINE L2 3225 3297 -16 288 77 0 0 chr1 218224676 218224715 -24439638 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 404 309 193 22 chr1 218224717 218225079 -24439274 - L2 LINE L2 -38 3275 2852 374 287 85 8 chr1 218225100 218225229 -24439124 - MIR3 SINE MIR -67 141 3 241 184 0 66 chr1 218226055 218226131 -24438222 + (CCCCG)n Simple_repeat Simple_repeat 1 71 0 741 253 11 35 chr1 218226849 218227078 -24437275 - MIR SINE MIR -28 234 12 1912 108 60 4 chr1 218227121 218227410 -24436943 + AluSq SINE Alu 1 304 0 647 164 0 67 chr1 218227410 218227575 -24436778 + MER53 DNA DNA 10 163 -26 252 143 0 20 chr1 218227748 218227795 -24436558 + LTR37A LTR ERV1 2 47 -379 952 212 9 61 chr1 218227795 218227964 -24436389 + MER20 DNA MER1_type 1 156 -63 2722 140 63 95 chr1 218227964 218228594 -24435759 - MER4B LTR ERV1 0 610 1 952 212 9 61 chr1 218228594 218228655 -24435698 + MER20 DNA MER1_type 156 219 0 359 165 28 119 chr1 218228655 218228698 -24435655 + LTR37A LTR ERV1 40 85 -341 1933 121 10 35 chr1 218228698 218229019 -24435334 - AluSx SINE Alu 0 320 7 359 165 28 119 chr1 218229019 218229083 -24435270 + LTR37A LTR ERV1 85 138 -288 1036 194 50 40 chr1 218229114 218229344 -24435009 + LTR37A LTR ERV1 111 346 -80 2288 102 3 3 chr1 218229344 218229639 -24434714 - AluSp SINE Alu -18 295 1 1036 194 50 40 chr1 218229639 218229707 -24434646 + LTR37A LTR ERV1 346 412 -14 976 198 59 101 chr1 218229769 218230107 -24434246 + MER92A LTR ERV1 28 351 -61 441 221 21 7 chr1 218230114 218230254 -24434099 + CT-rich Low_complexity Low_complexity 3 144 0 2140 101 0 7 chr1 218230254 218230531 -24433822 - AluSq SINE Alu -38 275 1 940 83 8 0 chr1 218230579 218230700 -24433653 - AluSp/q SINE Alu -16 297 176 333 85 0 0 chr1 218230827 218230874 -24433479 + tRNA-Gln-CAG tRNA tRNA 1 47 -28 405 109 0 0 chr1 218231717 218231781 -24432572 + (GA)n Simple_repeat Simple_repeat 1 64 0 2432 96 0 0 chr1 218231919 218232220 -24432133 - AluSx SINE Alu -11 301 1 327 271 73 10 chr1 218232303 218232399 -24431954 - MIR SINE MIR -52 210 109 245 198 66 110 chr1 218233071 218233162 -24431191 + MIR SINE MIR 120 206 -56 280 314 14 0 chr1 218234447 218234517 -24429836 + MIR SINE MIR 79 149 -113 236 188 21 0 chr1 218234660 218234708 -24429645 - L3 LINE CR1 -6 1571 1523 2125 137 0 0 chr1 218234710 218235009 -24429344 - AluSx SINE Alu -13 299 1 470 195 35 18 chr1 218235108 218235221 -24429132 - MER103 DNA DNA -7 159 45 1023 295 32 12 chr1 218235225 218235567 -24428786 - LTR16B LTR ERVL 0 464 116 547 162 10 0 chr1 218235605 218235704 -24428649 + FLAM_C SINE Alu 32 131 -12 758 285 0 6 chr1 218235706 218235871 -24428482 - MIR SINE MIR -50 212 49 501 278 99 12 chr1 218235943 218236195 -24428158 + L2 LINE L2 1840 2113 -1201 493 156 9 9 chr1 218236525 218236565 -24427788 + CT-rich Low_complexity Low_complexity 4 43 -69 2277 126 0 3 chr1 218236565 218236874 -24427479 - AluSx SINE Alu -4 308 1 493 156 9 9 chr1 218236874 218236942 -24427411 + CT-rich Low_complexity Low_complexity 42 112 0 443 601 0 0 chr1 218236923 218237101 -24427252 + polypyrimidine Low_complexity Low_complexity 1 178 0 * 2204 100 42 0 chr1 218237110 218237399 -24426954 - AluSx SINE Alu -11 301 1 390 279 90 8 chr1 218238260 218238382 -24425971 + L2 LINE L2 3136 3267 -5 212 86 29 0 chr1 218238693 218238728 -24425625 + (TC)n Simple_repeat Simple_repeat 2 37 0 2763 139 21 6 chr1 218239036 218239510 -24424843 - MER31A LTR ERV1 -4 481 1 1424 180 56 0 chr1 218239798 218239969 -24424384 - AluJo SINE Alu -10 302 111 201 74 0 0 chr1 218239969 218239996 -24424357 + (TG)n Simple_repeat Simple_repeat 2 28 0 1424 180 56 0 chr1 218239996 218240074 -24424279 - AluJo SINE Alu -201 111 39 2326 105 3 10 chr1 218240140 218240454 -24423899 - AluSx SINE Alu 0 312 1 204 97 0 0 chr1 218240962 218240993 -24423360 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 248 309 71 0 chr1 218241013 218241097 -24423256 - L2 LINE L2 -37 3235 3146 468 88 0 236 chr1 218241176 218241269 -24423084 - L1MB2 LINE L1 -283 5888 5841 2262 107 3 0 chr1 218241269 218241567 -24422786 - AluSp SINE Alu -14 299 1 468 88 0 236 chr1 218241567 218241621 -24422732 - L1MB2 LINE L1 -330 5841 5776 2119 122 0 35 chr1 218241648 218241959 -24422394 - AluSx SINE Alu -12 300 1 2159 134 0 0 chr1 218241967 218242257 -24422096 - AluJb SINE Alu -22 290 1 1782 164 3 50 chr1 218243217 218243535 -24420818 - AluJo SINE Alu -9 303 1 4183 192 68 92 chr1 218244141 218244242 -24420111 - L1MC4 LINE L1 -25 8017 7915 189 0 0 0 chr1 218244242 218244263 -24420090 + (TCCA)n Simple_repeat Simple_repeat 3 23 0 4183 192 68 92 chr1 218244263 218245502 -24418851 - L1MC4 LINE L1 -127 7915 6709 428 235 23 45 chr1 218245541 218245561 -24418792 + LTR37B LTR ERV1 83 102 -366 2085 106 48 3 chr1 218245561 218245854 -24418499 - AluSq SINE Alu -5 308 3 428 235 23 45 chr1 218245854 218245965 -24418388 + LTR37B LTR ERV1 102 211 -257 224 217 0 0 chr1 218245990 218246050 -24418303 + A-rich Low_complexity Low_complexity 1 60 0 640 208 30 6 chr1 218246055 218246223 -24418130 + LTR37B LTR ERV1 220 391 -77 22 80 0 0 chr1 218246269 218246319 -24418034 + AT_rich Low_complexity Low_complexity 1 50 0 2256 82 7 7 chr1 218246341 218246622 -24417731 + AluSq SINE Alu 22 302 -11 2115 120 21 3 chr1 218246630 218246921 -24417432 + AluSx SINE Alu 1 296 -16 956 274 22 16 chr1 218246936 218247254 -24417099 - L1MC4a LINE L1 -1221 6587 6268 765 143 30 30 chr1 218247274 218247407 -24416946 + FLAM_C SINE Alu 1 133 0 1250 149 24 69 chr1 218248368 218248465 -24415888 - MER45R DNA AcHobo -10 1571 1471 2107 111 28 3 chr1 218248465 218248754 -24415599 + AluSx SINE Alu 7 302 -10 1250 149 24 69 chr1 218248754 218248991 -24415362 - MER45R DNA AcHobo -110 1471 1252 24 0 0 0 chr1 218248991 218249015 -24415338 + AT_rich Low_complexity Low_complexity 1 24 0 513 62 0 0 chr1 218249015 218249079 -24415274 - U6 snRNA snRNA -43 64 1 465 195 53 44 chr1 218249079 218249113 -24415240 - MER45 DNA AcHobo -60 118 86 3737 184 11 54 chr1 218249113 218249394 -24414959 + MER72 LTR ERV1 1 293 -429 2563 61 0 16 chr1 218249394 218249705 -24414648 - AluY SINE Alu -5 306 1 3737 184 11 54 chr1 218249705 218250178 -24414175 + MER72 LTR ERV1 293 722 0 465 195 53 44 chr1 218250178 218250256 -24414097 - MER45 DNA AcHobo -92 86 5 722 316 66 0 chr1 218250278 218250534 -24413819 - LTR16A LTR ERVL -12 438 166 2005 132 13 13 chr1 218250754 218251057 -24413296 + AluJo SINE Alu 7 309 -3 484 263 39 0 chr1 218251125 218251304 -24413049 + L1M4 LINE L1 2247 2432 -3714 2252 165 77 18 chr1 218251483 218251560 -24412793 + L1MC1 LINE L1 5808 5879 -454 1735 115 53 153 chr1 218251560 218251977 -24412376 - THE1C LTR MaLR 0 375 1 2252 165 77 18 chr1 218251977 218252396 -24411957 + L1MC1 LINE L1 5879 6333 0 1050 174 13 52 chr1 218252988 218253218 -24411135 + L1MB3 LINE L1 5963 6183 0 1356 272 51 2 chr1 218253506 218253976 -24410377 - L1MEc LINE L1 -3420 2795 2303 317 219 102 43 chr1 218253982 218254169 -24410184 - L1MEc LINE L1 -4082 2314 2117 254 111 0 0 chr1 218254204 218254240 -24410113 + MER20 DNA MER1_type 184 219 0 298 159 48 0 chr1 218254245 218254308 -24410045 - L1MC5 LINE L1 -594 7367 7302 505 237 146 6 chr1 218254457 218254638 -24409715 - L1MC4 LINE L1 -731 7230 7040 284 350 164 0 chr1 218255102 218255285 -24409068 + MIR SINE MIR 2 214 -48 369 274 60 0 chr1 218255468 218255585 -24408768 - MIR3 SINE MIR -54 154 31 210 245 0 0 chr1 218255840 218255889 -24408464 - L2 LINE L2 -2 3311 3263 1920 138 10 16 chr1 218255914 218256225 -24408128 + AluSx SINE Alu 1 309 -3 2180 117 3 0 chr1 218257386 218257693 -24406660 - AluSc SINE Alu -1 308 1 1607 162 13 36 chr1 218257744 218258047 -24406306 + AluJo SINE Alu 3 298 -14 24 32 0 0 chr1 218258348 218258379 -24405974 + AT_rich Low_complexity Low_complexity 1 31 0 1966 141 3 10 chr1 218258379 218258691 -24405662 + AluSx SINE Alu 1 310 -2 2036 124 7 0 chr1 218259223 218259522 -24404831 + AluSx SINE Alu 1 301 -11 1453 240 54 52 chr1 218259728 218259835 -24404518 + L2 LINE L2 1099 1204 -2110 1760 246 129 2 chr1 218259835 218260338 -24404015 + MLT1F1 LTR MaLR 1 567 0 1453 240 54 52 chr1 218260338 218260458 -24403895 + L2 LINE L2 1204 1322 -1992 2071 121 3 0 chr1 218260458 218260747 -24403606 - AluSq SINE Alu -23 290 1 1453 240 54 52 chr1 218260747 218261039 -24403314 + L2 LINE L2 1322 1620 -1694 877 281 83 28 chr1 218261038 218261278 -24403075 - L2 LINE L2 -1311 2003 1735 * 2137 119 0 0 chr1 218261278 218261590 -24402763 + AluSx SINE Alu 1 312 0 877 281 83 28 chr1 218261590 218261712 -24402641 - L2 LINE L2 -1579 1735 1621 633 14 0 0 chr1 218261938 218262012 -24402341 + (TATTG)n Simple_repeat Simple_repeat 2 75 0 1546 143 66 42 chr1 218262014 218262300 -24402053 - AluJo SINE Alu -19 293 1 1824 208 84 40 chr1 218262472 218262842 -24401511 - MER21B LTR ERV1 -49 814 417 2282 117 73 9 chr1 218262842 218263184 -24401169 + THE1B LTR MaLR 1 364 0 1824 208 84 40 chr1 218263184 218263290 -24401063 - MER21B LTR ERV1 -446 417 317 432 55 0 0 chr1 218263330 218263385 -24400968 + (TC)n Simple_repeat Simple_repeat 1 55 0 279 0 0 0 chr1 218263385 218263416 -24400937 + (TG)n Simple_repeat Simple_repeat 2 32 0 1221 159 141 30 chr1 218263523 218263859 -24400494 + MSTA LTR MaLR 15 426 -2 9429 164 35 8 chr1 218263862 218265467 -24398886 + MSTA-int LTR MaLR 2 1651 0 1996 129 199 6 chr1 218265467 218265823 -24398530 + MSTA LTR MaLR 3 428 0 3507 129 11 4 chr1 218265825 218266350 -24398003 - L1PA14 LINE L1 -41 6120 5592 1127 174 147 45 chr1 218266358 218266463 -24397890 - MER21B LTR ERV1 -553 310 217 465 19 0 0 chr1 218266463 218266517 -24397836 + (TCCC)n Simple_repeat Simple_repeat 2 55 0 1361 218 0 20 chr1 218266516 218266881 -24397472 - AluJo SINE Alu 0 359 1 1127 174 147 45 chr1 218266881 218267038 -24397315 - MER21B LTR ERV1 -1010 4294967149 19 407 183 10 96 chr1 218267036 218267140 -24397213 - MER21B LTR ERV1 -757 106 12 * 212 315 14 0 chr1 218267258 218267331 -24397022 + L2 LINE L2 2560 2633 -681 1769 173 0 3 chr1 218267733 218268046 -24396307 - AluJb SINE Alu 0 312 1 220 244 218 13 chr1 218268263 218268341 -24396012 + MIR3 SINE MIR 3 96 -112 2950 165 47 42 chr1 218268815 218268873 -24395480 - L1MB7 LINE L1 -19 6165 6109 729 250 6 0 chr1 218268873 218269033 -24395320 - FRAM SINE Alu -5 161 1 2950 165 47 42 chr1 218269033 218269615 -24394738 - L1MB7 LINE L1 -75 6109 5522 572 313 162 16 chr1 218270606 218271146 -24393207 - L2 LINE L2 -4 3309 2687 1729 129 39 35 chr1 218271393 218271704 -24392649 - AluJo SINE Alu 0 312 1 199 216 59 20 chr1 218271832 218271871 -24392482 - MIR3 SINE MIR -14 194 154 438 200 13 191 chr1 218271871 218272076 -24392277 + MER5A DNA MER1_type 1 162 -27 1331 211 146 27 chr1 218272076 218272527 -24391826 - MLT1D LTR MaLR 0 505 1 438 200 13 191 chr1 218272527 218272551 -24391802 + MER5A DNA MER1_type 162 189 0 428 215 56 9 chr1 218272577 218272684 -24391669 - MIR SINE MIR -72 136 25 728 286 40 5 chr1 218272706 218272930 -24391423 - MIR SINE MIR 0 262 31 2060 133 3 0 chr1 218273885 218274186 -24390167 - AluSx SINE Alu -10 302 1 1738 175 0 7 chr1 218274210 218274502 -24389851 - AluJo SINE Alu -22 290 1 567 239 129 64 chr1 218274514 218274756 -24389597 + MIR SINE MIR 5 262 0 203 232 71 36 chr1 218275072 218275128 -24389225 + MIR SINE MIR 154 211 -51 203 213 16 49 chr1 218275520 218275581 -24388772 - L2 LINE L2 -5 3267 3209 4797 145 14 56 chr1 218276462 218276679 -24387674 - L1MB3 LINE L1 -1 6182 5957 2094 121 0 3 chr1 218276679 218276992 -24387361 - AluSx SINE Alu 0 312 1 4797 145 14 56 chr1 218276992 218277497 -24386856 - L1MB3 LINE L1 -226 5957 5432 1996 137 0 16 chr1 218277497 218277810 -24386543 - AluSq SINE Alu -5 308 1 4797 145 14 56 chr1 218277810 218277975 -24386378 - L1MB3 LINE L1 -751 5432 5332 1681 178 7 3 chr1 218277975 218278273 -24386080 - AluSx SINE Alu -13 299 1 4797 145 14 56 chr1 218278273 218278312 -24386041 - L1MB3 LINE L1 -851 5332 5293 484 264 74 14 chr1 218279247 218279395 -24384958 + MIR SINE MIR 10 166 -96 2042 140 0 10 chr1 218280329 218280637 -24383716 - AluSx SINE Alu -7 305 1 392 289 103 97 chr1 218280873 218281253 -24383100 - L2 LINE L2 -968 2346 1965 2053 129 3 0 chr1 218281378 218281673 -24382680 - AluSx SINE Alu -16 296 1 22 56 0 0 chr1 218281774 218281810 -24382543 + AT_rich Low_complexity Low_complexity 1 36 0 2406 64 0 3 chr1 218282174 218282486 -24381867 + AluY SINE Alu 1 311 0 2083 99 31 0 chr1 218282677 218282970 -24381383 - AluSq SINE Alu -10 303 2 1921 101 10 54 chr1 218284171 218284506 -24379847 + AluSx SINE Alu 3 324 0 421 289 25 13 chr1 218284526 218284685 -24379668 + MIR3 SINE MIR 41 201 -7 1197 147 0 15 chr1 218286813 218287017 -24377336 - AluJb SINE Alu -27 285 85 578 238 94 60 chr1 218287218 218287537 -24376816 - L1MC4a LINE L1 -1815 5993 5664 297 267 51 78 chr1 218288359 218288576 -24375777 - MLT1K LTR MaLR 0 588 378 295 278 22 0 chr1 218289127 218289217 -24375136 + MIR SINE MIR 111 202 -60 317 181 313 0 chr1 218289285 218289368 -24374985 + L2 LINE L2 3153 3261 -11 586 242 95 26 chr1 218291210 218291441 -24372912 + Charlie4a DNA MER1_type 178 424 -84 908 179 108 119 chr1 218291458 218291928 -24372425 - MER4C LTR ERV1 0 465 1 2307 150 33 29 chr1 218293726 218294271 -24370082 + MLT2A2 LTR ERVL 3 554 0 437 181 81 138 chr1 218294298 218294458 -24369895 - MER102a DNA MER1_type -2 328 178 638 316 116 20 chr1 218294461 218294711 -24369642 + L2 LINE L2 3039 3312 -1 23 0 0 0 chr1 218295191 218295214 -24369139 + AT_rich Low_complexity Low_complexity 1 23 0 328 317 57 45 chr1 218297382 218297628 -24366725 - L2 LINE L2 -338 2976 2728 254 325 85 24 chr1 218298478 218298690 -24365663 - L2 LINE L2 -735 2579 2355 210 74 0 0 chr1 218298775 218298802 -24365551 + L2 LINE L2 3277 3303 -10 342 241 35 26 chr1 218298859 218298975 -24365378 - MIR SINE MIR 0 262 146 230 216 136 11 chr1 218299268 218299356 -24364997 + MIR SINE MIR 57 155 -107 1036 213 139 35 chr1 218299401 218299739 -24364614 - MER93b LTR ERV1 0 373 1 2097 109 0 0 chr1 218299887 218300200 -24364153 - AluSx SINE Alu 0 313 1 186 43 0 0 chr1 218300774 218300797 -24363556 + (CA)n Simple_repeat Simple_repeat 1 23 0 2234 139 15 0 chr1 218300803 218301142 -24363211 + MER2 DNA MER2_type 1 344 0 362 290 43 22 chr1 218301233 218301371 -24362982 - MIR3 SINE MIR -53 155 15 199 339 66 25 chr1 218301364 218301485 -24362868 + L2 LINE L2 3141 3266 -6 * 1822 88 0 0 chr1 218303245 218303472 -24360881 + AluSg/x SINE Alu 72 298 -14 328 277 27 98 chr1 218303534 218303634 -24360719 + L1MC4 LINE L1 5483 5560 -2248 573 154 65 65 chr1 218303634 218303757 -24360596 - FLAM_C SINE Alu -7 126 4 328 277 27 98 chr1 218303757 218303880 -24360473 + L1MC4 LINE L1 5560 5690 -2118 649 165 29 0 chr1 218303922 218304025 -24360328 - U6 snRNA snRNA 0 107 2 547 176 9 65 chr1 218304245 218304353 -24360000 + MER8 DNA MER2_type 4 105 -134 1053 138 0 0 chr1 218304364 218304509 -24359844 + AluJb SINE Alu 130 274 -38 1618 195 7 0 chr1 218304930 218305212 -24359141 + AluJb SINE Alu 1 284 -28 438 36 0 0 chr1 218305213 218305269 -24359084 + (CA)n Simple_repeat Simple_repeat 2 57 0 1858 80 0 0 chr1 218305593 218305817 -24358536 + AluSq SINE Alu 3 226 -87 900 201 42 123 chr1 218307528 218307861 -24356492 + L1MC4 LINE L1 6718 7069 -938 338 197 0 0 chr1 218308344 218308410 -24355943 - MSTD LTR MaLR -1 395 330 480 152 0 36 chr1 218308410 218308522 -24355831 + GA-rich Low_complexity Low_complexity 4 111 0 297 0 0 0 chr1 218308541 218308574 -24355779 + (CACG)n Simple_repeat Simple_repeat 1 33 0 266 169 34 0 chr1 218308606 218308665 -24355688 + GA-rich Low_complexity Low_complexity 2 62 0 1653 173 88 16 chr1 218308666 218308984 -24355369 - MSTD LTR MaLR -55 341 1 1857 153 0 4 chr1 218310119 218310400 -24353953 + AluSq SINE Alu 1 280 -33 225 0 0 0 chr1 218310401 218310426 -24353927 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 486 151 27 0 chr1 218310631 218310704 -24353649 + AluS SINE Alu 2 76 -237 1767 123 4 11 chr1 218310704 218310965 -24353388 + AluSq SINE Alu 46 304 -9 1862 150 10 10 chr1 218311378 218311684 -24352669 + AluSx SINE Alu 3 308 -4 2040 125 4 0 chr1 218312431 218312712 -24351641 + AluSg SINE Alu 1 282 -28 814 143 0 8 chr1 218313510 218313636 -24350717 - AluSp/q SINE Alu -9 304 180 243 250 12 116 chr1 218314126 218314241 -24350112 - L2 LINE L2 -5 3308 3213 2275 115 0 0 chr1 218314241 218314545 -24349808 - AluSq SINE Alu -9 304 1 243 250 12 116 chr1 218314545 218314593 -24349760 - L2 LINE L2 -100 3213 3162 1856 109 3 65 chr1 218315031 218315324 -24349029 - AluSx SINE Alu -1 311 37 742 122 0 28 chr1 218315326 218315433 -24348920 - AluJo/FLAM SINE Alu -180 132 29 726 158 0 0 chr1 218315437 218315538 -24348815 + FLAM_C SINE Alu 3 103 -40 438 198 47 0 chr1 218315539 218315645 -24348708 + L1M3c LINE L1 1348 1458 -4683 1769 98 0 0 chr1 218315645 218315869 -24348484 + AluSg SINE Alu 1 224 -86 844 238 0 6 chr1 218316009 218316177 -24348176 + AluJb SINE Alu 117 283 -29 1315 209 8 4 chr1 218316796 218317064 -24347289 + AluJo SINE Alu 40 308 -4 305 222 169 21 chr1 218317118 218317307 -24347046 - Charlie1 DNA MER1_type -6 2755 2539 2039 129 3 7 chr1 218317350 218317644 -24346709 - AluSq SINE Alu -16 297 5 1336 218 10 10 chr1 218317802 218318100 -24346253 - AluJo SINE Alu -14 298 1 581 250 0 0 chr1 218318124 218318240 -24346113 - FLAM_C SINE Alu -19 124 9 1233 232 93 76 chr1 218318346 218318987 -24345366 + L2 LINE L2 2458 3100 -213 1566 194 23 13 chr1 218318988 218319162 -24345191 - AluJo SINE Alu 0 312 132 2220 103 0 10 chr1 218319162 218319474 -24344879 - AluSq SINE Alu 0 313 1 1566 194 23 13 chr1 218319474 218319608 -24344745 - AluJo SINE Alu -180 132 1 5743 121 32 20 chr1 218319738 218320656 -24343697 + MER11C LTR ERVK 143 1071 0 220 290 124 65 chr1 218320711 218320880 -24343473 + MIR SINE MIR 9 187 -75 180 0 0 0 chr1 218321410 218321430 -24342923 + (A)n Simple_repeat Simple_repeat 1 20 0 691 171 0 0 chr1 218321555 218321660 -24342693 - AluJb SINE Alu -13 299 195 1265 235 7 26 chr1 218321672 218321974 -24342379 - AluJo SINE Alu -16 296 1 321 228 48 48 chr1 218322012 218322121 -24342232 + L1ME LINE L1 5723 5820 -301 3857 53 2 2 chr1 218322283 218322734 -24341619 + L1PA7 LINE L1 5700 6150 -4 345 315 96 17 chr1 218323029 218323207 -24341146 - MIR SINE MIR -42 220 29 931 126 0 0 chr1 218323414 218323541 -24340812 - FLAM_C SINE Alu -16 127 1 180 280 86 54 chr1 218324339 218324432 -24339921 - L2 LINE L2 -45 3268 3173 2131 117 0 13 chr1 218324977 218325275 -24339078 + AluSx SINE Alu 1 294 -18 216 242 16 32 chr1 218328845 218328907 -24335446 - L2 LINE L2 -7 3265 3205 196 108 46 46 chr1 218330094 218330159 -24334194 + (CATA)n Simple_repeat Simple_repeat 2 66 0 3014 174 24 8 chr1 218330881 218331386 -24332967 + MER44D DNA MER2_type 2 569 -36 4832 161 19 15 chr1 218333937 218334810 -24329543 + L1MB3 LINE L1 5305 6181 -2 599 173 170 1 chr1 218335671 218335808 -24328545 + MLT1C LTR MaLR 336 465 -2 481 301 83 30 chr1 218337634 218337973 -24326380 + L1 LINE L1 2963 3319 -2827 233 188 0 31 chr1 218337975 218338039 -24326314 + L1MC5 LINE L1 7473 7534 -427 1206 142 46 0 chr1 218340567 218340764 -24323589 + MER46B DNA MER2_type 1 81 -155 1250 137 18 189 chr1 218340770 218340896 -24323457 + AluSx SINE Alu 21 53 -259 2287 95 16 0 chr1 218340896 218341201 -24323152 + AluSq SINE Alu 1 310 -3 1250 137 18 189 chr1 218341201 218341417 -24322936 + AluSx SINE Alu 53 304 -8 1299 88 44 0 chr1 218341417 218341598 -24322755 + MER46B DNA MER2_type 47 235 -1 824 141 0 0 chr1 218342045 218342166 -24322187 + FRAM SINE Alu 26 146 -30 261 0 0 0 chr1 218342169 218342198 -24322155 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1484 240 190 43 chr1 218342923 218343289 -24321064 + L1MC4 LINE L1 7374 7685 -357 2160 132 143 13 chr1 218343289 218343668 -24320685 + MSTA LTR MaLR 1 428 0 1484 240 190 43 chr1 218343668 218343876 -24320477 + L1MC4 LINE L1 7685 8032 -10 2189 147 18 37 chr1 218344065 218344446 -24319907 - THE1C LTR MaLR 0 375 2 2084 89 4 0 chr1 218344589 218344858 -24319495 + AluSq SINE Alu 1 270 -43 729 243 22 56 chr1 218344876 218344930 -24319423 - MIR SINE MIR 0 262 208 1735 135 12 65 chr1 218344930 218345255 -24319098 - AluJb SINE Alu -4 308 1 729 243 22 56 chr1 218345255 218345468 -24318885 - MIR SINE MIR -54 208 4 2245 115 3 0 chr1 218345635 218345939 -24318414 + AluSq SINE Alu 1 305 -8 195 42 0 0 chr1 218345939 218345963 -24318390 + (AATAG)n Simple_repeat Simple_repeat 4 27 0 2451 114 74 0 chr1 218347623 218347973 -24316380 - MER51B LTR ERV1 -1 376 1 239 247 270 0 chr1 218348477 218348566 -24315787 - L2 LINE L2 -1 3271 3159 669 216 0 0 chr1 218348842 218348958 -24315395 + MLT1D LTR MaLR 7 122 -383 222 62 0 0 chr1 218349384 218349416 -24314937 + (A)n Simple_repeat Simple_repeat 1 32 0 1742 203 24 42 chr1 218349416 218349825 -24314528 + MLT1D LTR MaLR 104 505 0 2033 143 0 0 chr1 218349830 218350123 -24314230 - AluSx SINE Alu -19 293 1 611 240 66 16 chr1 218350175 218350358 -24313995 + HAL1 LINE L1 2247 2438 -69 526 173 147 86 chr1 218350476 218350548 -24313805 - MER3 DNA MER1_type 0 209 143 2232 114 0 13 chr1 218350548 218350856 -24313497 + AluSx SINE Alu 1 304 -8 526 173 147 86 chr1 218350856 218350980 -24313373 - MER3 DNA MER1_type -66 143 1 304 167 45 15 chr1 218351163 218351229 -24313124 - MLT1G LTR MaLR -4 586 519 719 212 158 39 chr1 218351230 218351489 -24312864 - MLT1H1 LTR MaLR -263 292 3 200 227 0 0 chr1 218351708 218351752 -24312601 + T-rich Low_complexity Low_complexity 1 44 0 1878 137 36 19 chr1 218351939 218352246 -24312107 + AluSx SINE Alu 1 312 0 2350 62 0 42 chr1 218352844 218353152 -24311201 - AluY SINE Alu -16 295 1 255 189 0 0 chr1 218353751 218353804 -24310549 + T-rich Low_complexity Low_complexity 1 53 0 213 121 0 0 chr1 218354568 218354601 -24309752 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1781 110 118 4 chr1 218354667 218354939 -24309414 + AluSq SINE Alu 1 303 -10 1825 158 3 23 chr1 218355347 218355651 -24308702 + AluJo SINE Alu 1 298 -14 2122 129 27 0 chr1 218355695 218355989 -24308364 + AluSx SINE Alu 1 302 -10 228 33 0 0 chr1 218356196 218356226 -24308127 + MIR SINE MIR 109 138 -124 2327 100 0 7 chr1 218356406 218356707 -24307646 - AluSx SINE Alu -13 299 1 210 267 105 35 chr1 218358680 218358766 -24305587 + MIR3 SINE MIR 114 205 -3 232 217 65 0 chr1 218358772 218358818 -24305535 - MIR3 SINE MIR -12 196 148 * 1001 300 91 68 chr1 218358810 218359086 -24305267 - L3 LINE CR1 -105 1472 1204 2224 96 0 4 chr1 218359086 218359400 -24304953 - AluSg SINE Alu 0 313 1 1001 300 91 68 chr1 218359400 218359439 -24304914 - L3 LINE CR1 -373 1204 1167 712 188 51 8 chr1 218359439 218359556 -24304797 - FLAM_A SINE Alu -7 126 5 1001 300 91 68 chr1 218359556 218359911 -24304442 - L3 LINE CR1 -410 1167 785 1233 268 43 5 chr1 218360039 218360409 -24303944 + HAL1 LINE L1 13 396 -2111 1332 222 26 22 chr1 218360514 218360825 -24303528 - AluJo SINE Alu 0 312 1 270 0 0 0 chr1 218360834 218360864 -24303489 + (T)n Simple_repeat Simple_repeat 1 30 0 336 276 11 0 chr1 218360865 218360952 -24303401 + HAL1 LINE L1 637 724 -1783 1659 145 8 4 chr1 218360971 218361219 -24303134 + MER1B DNA MER1_type 31 279 -60 5034 230 111 29 chr1 218361223 218361668 -24302685 + HAL1 LINE L1 750 1157 -1350 2176 129 17 70 chr1 218361668 218362024 -24302329 - MER1B DNA MER1_type 0 337 1 5034 230 111 29 chr1 218362024 218363180 -24301173 + HAL1 LINE L1 1157 2483 -24 2527 164 76 0 chr1 218363189 218363585 -24300768 + MSTB LTR MaLR 1 426 0 306 106 0 0 chr1 218363693 218363740 -24300613 + (A)n Simple_repeat Simple_repeat 1 47 0 339 25 0 0 chr1 218364048 218364088 -24300265 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1768 142 0 15 chr1 218364088 218364355 -24299998 - AluSx SINE Alu -11 301 39 218 234 202 11 chr1 218364355 218364449 -24299904 - L2 LINE L2 -601 2713 2602 227 288 61 0 chr1 218364456 218364522 -24299831 + L2 LINE L2 3193 3262 -10 273 217 116 0 chr1 218364653 218364722 -24299631 - MIR SINE MIR -39 223 147 2161 106 0 23 chr1 218365195 218365496 -24298857 + AluSq SINE Alu 1 294 -19 2228 127 0 0 chr1 218366453 218366753 -24297600 + AluSx SINE Alu 1 300 -12 2143 98 0 0 chr1 218367765 218368039 -24296314 - AluSq SINE Alu 0 313 40 1219 178 51 0 chr1 218368040 218368218 -24296135 - AluJb SINE Alu -2 310 118 213 65 0 0 chr1 218368218 218368249 -24296104 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1219 178 51 0 chr1 218368249 218368284 -24296069 - AluJb SINE Alu -194 118 86 465 234 9 18 chr1 218368338 218368449 -24295904 + MIR SINE MIR 30 139 -123 2327 98 19 3 chr1 218368900 218369207 -24295146 - AluSx SINE Alu 0 312 1 329 240 0 13 chr1 218369256 218369331 -24295022 + MIR SINE MIR 149 222 -40 2010 122 0 0 chr1 218369358 218369628 -24294725 + AluSx SINE Alu 1 270 -42 353 246 109 36 chr1 218369752 218369862 -24294491 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr1 218370249 218370277 -24294076 + AT_rich Low_complexity Low_complexity 1 28 0 1252 189 44 12 chr1 218370404 218370743 -24293610 - L1M4c LINE L1 -4071 2313 1964 308 178 56 22 chr1 218370852 218370942 -24293411 - L1M4c LINE L1 -4846 1538 1446 1036 122 41 25 chr1 218370943 218371139 -24293214 - L1MA5 LINE L1 -1 6299 6101 1826 177 17 0 chr1 218372301 218372601 -24291752 - AluJb SINE Alu -7 305 1 472 374 47 30 chr1 218372764 218373315 -24291038 - L2 LINE L2 -2 3270 2710 496 266 0 9 chr1 218373326 218373439 -24290914 - L2 LINE L2 -5 3308 3197 185 132 26 0 chr1 218373721 218373759 -24290594 + (TA)n Simple_repeat Simple_repeat 1 39 0 26 64 0 0 chr1 218373944 218373991 -24290362 + AT_rich Low_complexity Low_complexity 1 47 0 2347 91 3 0 chr1 218374052 218374348 -24290005 + AluSq SINE Alu 1 297 -16 2111 133 3 0 chr1 218374756 218375057 -24289296 + AluSx SINE Alu 1 302 -10 34 24 0 0 chr1 218375068 218375109 -24289244 + AT_rich Low_complexity Low_complexity 1 41 0 1303 26 13 0 chr1 218375109 218375262 -24289091 - L1PA4 LINE L1 -3 6152 5998 1926 147 0 42 chr1 218375264 218375439 -24288914 - AluSx SINE Alu -13 299 141 2464 88 0 0 chr1 218375439 218375747 -24288606 - AluSq SINE Alu -5 308 1 1926 147 0 42 chr1 218375747 218375883 -24288470 - AluSx SINE Alu -171 141 1 2426 71 0 0 chr1 218375933 218376228 -24288125 + AluY SINE Alu 1 295 -16 1243 126 0 0 chr1 218376256 218376431 -24287922 + AluSq SINE Alu 129 303 -10 271 83 0 0 chr1 218376444 218376480 -24287873 + U1 snRNA snRNA 1 36 -129 777 185 0 0 chr1 218377306 218377425 -24286928 + AluJb SINE Alu 2 120 -192 247 130 0 22 chr1 218377431 218377467 -24286886 + Alu SINE Alu 90 126 -177 1488 128 5 0 chr1 218377467 218377686 -24286667 + AluSp SINE Alu 91 310 -3 2126 135 6 3 chr1 218377868 218378179 -24286174 + AluSx SINE Alu 1 312 0 2153 124 7 3 chr1 218378204 218378511 -24285842 + AluSx SINE Alu 1 308 -4 2251 106 3 0 chr1 218378788 218379080 -24285273 - AluSx SINE Alu -15 297 5 2117 79 43 4 chr1 218379187 218379467 -24284886 - AluSq SINE Alu -22 291 1 818 146 11 11 chr1 218379818 218379996 -24284357 + CT-rich Low_complexity Low_complexity 3 180 0 392 104 15 0 chr1 218380011 218380078 -24284275 + (TC)n Simple_repeat Simple_repeat 1 68 0 1265 159 18 0 chr1 218380186 218380412 -24283941 + L1MB4 LINE L1 5951 6180 0 1436 204 50 57 chr1 218380412 218380598 -24283755 + L1M4c LINE L1 1207 1393 -4991 2621 65 0 0 chr1 218380598 218380907 -24283446 + AluY SINE Alu 1 309 -2 1436 204 50 57 chr1 218380907 218381168 -24283185 + L1M4c LINE L1 1393 1653 -4731 2167 130 7 0 chr1 218381176 218381484 -24282869 + AluSq SINE Alu 3 312 -1 1287 158 62 5 chr1 218381989 218382198 -24282155 + AluJo SINE Alu 9 229 -83 2317 105 0 0 chr1 218382546 218382852 -24281501 + AluSx SINE Alu 5 310 -2 274 317 24 24 chr1 218383241 218383364 -24280989 - MIR SINE MIR -112 150 28 1053 104 0 0 chr1 218383640 218383774 -24280579 + AluSg SINE Alu 1 134 -176 2270 95 20 0 chr1 218383774 218384069 -24280284 + AluSp SINE Alu 1 301 -12 1426 191 3 50 chr1 218384069 218384210 -24280143 - MLT1A1 LTR MaLR -80 285 139 237 33 0 0 chr1 218384210 218384240 -24280113 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2146 109 7 0 chr1 218384240 218384525 -24279828 - AluSx SINE Alu -25 287 1 1426 191 3 50 chr1 218384525 218384681 -24279672 - MLT1A1 LTR MaLR -224 141 1 2478 53 0 3 chr1 218384731 218385031 -24279322 + AluY SINE Alu 1 299 -12 2160 138 0 0 chr1 218385142 218385454 -24278899 - AluSx SINE Alu 0 312 1 1881 161 45 9 chr1 218385495 218385830 -24278523 - MER7A DNA MER2_type 0 346 2 484 236 54 69 chr1 218385835 218385929 -24278424 - L1MC4a LINE L1 -1865 5943 5849 2131 119 3 3 chr1 218385929 218386224 -24278129 - AluSx SINE Alu -17 295 1 2394 95 0 0 chr1 218386224 218386528 -24277825 - AluSx SINE Alu -8 304 1 484 236 54 69 chr1 218386528 218386635 -24277718 - L1MC4a LINE L1 -1957 5851 5744 1402 128 39 99 chr1 218386635 218386917 -24277436 - AluJo SINE Alu -13 299 35 2584 49 0 0 chr1 218386996 218387300 -24277053 + AluY SINE Alu 1 304 -7 201 188 21 21 chr1 218387405 218387453 -24276900 + CT-rich Low_complexity Low_complexity 1 48 0 486 221 228 20 chr1 218387529 218387678 -24276675 - MER5A DNA MER1_type 0 189 10 2295 75 17 0 chr1 218388211 218388503 -24275850 + AluSx SINE Alu 1 297 -15 1837 154 11 0 chr1 218389177 218389462 -24274891 - AluSx SINE Alu -24 288 1 2421 80 0 3 chr1 218389634 218389933 -24274420 - AluSg SINE Alu -12 298 1 409 296 164 14 chr1 218390074 218390287 -24274066 + MIR SINE MIR 2 246 -16 21 0 0 0 chr1 218391144 218391165 -24273188 + AT_rich Low_complexity Low_complexity 1 21 0 2447 67 0 10 chr1 218395379 218395678 -24268675 - AluY SINE Alu -15 296 1 1339 159 48 9 chr1 218395746 218395973 -24268380 + MER46A DNA MER2_type 1 236 0 287 269 47 74 chr1 218396487 218396636 -24267717 + L2 LINE L2 3151 3295 -18 2419 88 0 3 chr1 218396931 218397238 -24267115 + AluSg SINE Alu 1 306 -4 2207 132 26 58 chr1 218397366 218397403 -24266950 + MER47A DNA MER2_type 1 38 -2285 2233 96 0 20 chr1 218397403 218397567 -24266786 - AluSx SINE Alu -15 297 140 2516 56 0 13 chr1 218397567 218397869 -24266484 - AluY SINE Alu -13 298 1 2233 96 0 20 chr1 218397869 218398007 -24266346 - AluSx SINE Alu -172 140 1 2207 132 26 58 chr1 218398007 218398347 -24266006 + MER47A DNA MER2_type 38 366 0 586 123 0 0 chr1 218398362 218398443 -24265910 - AluJ/FLAM SINE Alu -229 83 3 2227 100 3 3 chr1 218398456 218398757 -24265596 - AluSq SINE Alu -12 301 1 347 250 113 70 chr1 218398758 218399042 -24265311 + L1ME4a LINE L1 5620 5915 -206 2161 105 23 3 chr1 218399442 218399747 -24264606 - AluSq SINE Alu -2 311 1 366 350 49 8 chr1 218399767 218399890 -24264463 - L2 LINE L2 -18 3254 3127 2127 133 3 0 chr1 218400341 218400635 -24263718 - AluSx SINE Alu -17 295 1 318 341 195 20 chr1 218401438 218401781 -24262572 - L2 LINE L2 -22 3291 2889 26 74 0 0 chr1 218401864 218401918 -24262435 + AT_rich Low_complexity Low_complexity 1 54 0 2225 102 14 0 chr1 218402069 218402354 -24261999 - AluSq SINE Alu -24 289 1 554 287 129 37 chr1 218402447 218402795 -24261558 + L2 LINE L2 2916 3295 -18 226 198 53 4 chr1 218402905 218403123 -24261230 + AluJo SINE Alu 1 301 -1 2413 72 0 37 chr1 218403706 218404027 -24260326 - AluY SINE Alu -2 309 1 277 154 19 0 chr1 218404135 218404187 -24260166 - MADE1 DNA Mariner 0 80 28 797 192 154 6 chr1 218404727 218404909 -24259444 + MER2 DNA MER2_type 2 210 -135 2332 89 7 0 chr1 218404950 218405252 -24259101 - AluSg SINE Alu -5 305 2 2335 83 0 17 chr1 218405437 218405737 -24258616 - AluY SINE Alu -16 295 1 674 124 0 0 chr1 218405980 218406077 -24258276 + AluSg/x SINE Alu 203 299 -10 2050 124 3 0 chr1 218406132 218406423 -24257930 - AluSg SINE Alu -17 293 2 1285 108 0 0 chr1 218406537 218406713 -24257640 - AluSg/x SINE Alu 0 312 137 319 197 0 16 chr1 218406716 218406777 -24257576 - MER58B DNA MER1_type -33 308 249 252 304 0 13 chr1 218407607 218407686 -24256667 + L2 LINE L2 3179 3256 -57 22 0 0 0 chr1 218408106 218408128 -24256225 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr1 218408327 218408358 -24255995 + AT_rich Low_complexity Low_complexity 1 31 0 2094 106 24 3 chr1 218408368 218408660 -24255693 + AluSx SINE Alu 1 298 -14 4932 172 63 56 chr1 218408801 218409355 -24254998 - L1MB7 LINE L1 -20 6164 5616 2107 123 10 0 chr1 218409355 218409655 -24254698 - AluSx SINE Alu -9 303 1 4932 172 63 56 chr1 218409655 218409918 -24254435 - L1MB7 LINE L1 -568 5616 5356 2007 138 3 0 chr1 218409918 218410208 -24254145 - AluSx SINE Alu -21 291 1 4932 172 63 56 chr1 218410208 218411451 -24252902 - L1MB7 LINE L1 -828 5356 4090 2180 127 0 0 chr1 218411828 218412119 -24252234 - AluSx SINE Alu -21 291 1 2471 64 0 3 chr1 218412173 218412471 -24251882 - AluY SINE Alu -14 297 1 2149 125 3 0 chr1 218412833 218413120 -24251233 - AluSq SINE Alu -25 288 1 1751 164 20 10 chr1 218413175 218413474 -24250879 - AluJo SINE Alu -10 302 1 259 316 138 37 chr1 218413495 218413713 -24250640 + MIR SINE MIR 19 258 -4 193 28 0 56 chr1 218413914 218413950 -24250403 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2001 129 14 0 chr1 218414258 218414552 -24249801 - AluSx SINE Alu -14 298 1 725 231 44 5 chr1 218414643 218414846 -24249507 - Charlie1b DNA MER1_type -167 356 146 * 898 215 105 31 chr1 218414823 218414969 -24249384 - Charlie1 DNA MER1_type -2516 245 75 384 22 0 0 chr1 218414969 218415014 -24249339 + (CA)n Simple_repeat Simple_repeat 2 46 0 898 215 105 31 chr1 218415014 218415095 -24249258 - Charlie1 DNA MER1_type -2686 75 1 1920 129 26 7 chr1 218415343 218415645 -24248708 - AluSx SINE Alu -4 308 1 1976 124 45 0 chr1 218416250 218416541 -24247812 + AluSx SINE Alu 1 304 -8 973 150 12 64 chr1 218416892 218417065 -24247288 + FRAM SINE Alu 1 164 -2 1662 115 12 16 chr1 218417205 218417458 -24246895 + AluSx SINE Alu 54 305 -7 2167 125 0 3 chr1 218418057 218418352 -24246001 - AluSq SINE Alu -19 294 1 273 160 170 32 chr1 218418405 218418499 -24245854 + MER104 DNA Tc2 13 119 -61 229 206 63 0 chr1 218418634 218418697 -24245656 - HsTC2 DNA Tc2 -1829 69 3 909 104 0 15 chr1 218418712 218418846 -24245507 - AluJb SINE Alu -6 306 175 536 127 0 0 chr1 218418846 218418917 -24245436 - AluJ/FLAM SINE Alu -241 71 1 554 293 20 7 chr1 218419051 218419198 -24245155 - MIR3 SINE MIR -22 186 38 250 237 53 26 chr1 218419425 218419539 -24244814 + L1MC4 LINE L1 7460 7576 -466 231 200 20 0 chr1 218419677 218419727 -24244626 + L1MC4 LINE L1 7689 7739 -303 2166 82 7 17 chr1 218420107 218420400 -24243953 + AluSg1 SINE Alu 1 290 -19 828 212 16 98 chr1 218420405 218420660 -24243693 + AluJb SINE Alu 38 271 -41 2420 99 0 0 chr1 218421286 218421598 -24242755 - AluSq SINE Alu -1 312 1 2510 70 0 13 chr1 218422742 218423057 -24241296 + AluY SINE Alu 1 311 0 1357 155 33 33 chr1 218423098 218423343 -24241010 + Charlie1 DNA MER1_type 1 245 -2516 381 164 15 0 chr1 218423342 218423409 -24240944 + Charlie1 DNA MER1_type 2689 2756 -5 * 21 36 0 0 chr1 218423893 218423921 -24240432 + AT_rich Low_complexity Low_complexity 1 28 0 610 120 0 33 chr1 218423934 218424142 -24240211 + AluJb SINE Alu 7 287 -25 297 68 0 0 chr1 218424146 218424190 -24240163 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1505 71 0 6 chr1 218424264 218424447 -24239906 - AluSx SINE Alu -124 188 7 252 0 0 0 chr1 218424719 218424747 -24239606 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1974 81 4 8 chr1 218424754 218425013 -24239340 + AluSx SINE Alu 44 301 -11 189 0 0 0 chr1 218425018 218425039 -24239314 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 1716 108 8 17 chr1 218425045 218425286 -24239067 - AluSq SINE Alu -74 239 1 2258 218 74 55 chr1 218428336 218428450 -24235903 + L1MC4 LINE L1 7102 7212 -830 1798 161 56 15 chr1 218428450 218428792 -24235561 + L1MB7 LINE L1 5812 6167 -17 2258 218 74 55 chr1 218428792 218428929 -24235424 + L1MC4 LINE L1 7212 7345 -697 1754 140 35 7 chr1 218428929 218429215 -24235138 + AluJb SINE Alu 1 294 -18 2258 218 74 55 chr1 218429215 218429691 -24234662 + L1MC4 LINE L1 7345 7844 -198 1953 109 84 0 chr1 218429707 218429992 -24234361 - AluSg SINE Alu -1 309 1 1849 132 56 42 chr1 218429992 218430212 -24234141 + Tigger1 DNA MER2_type 4 232 -2186 1703 195 0 7 chr1 218430212 218430510 -24233843 - AluJb SINE Alu -15 297 2 1849 132 56 42 chr1 218430510 218430644 -24233709 + Tigger1 DNA MER2_type 232 363 -2055 * 4386 124 22 46 chr1 218430642 218430742 -24233611 + Tigger1 DNA MER2_type 1698 1799 -619 2218 104 7 0 chr1 218430742 218431041 -24233312 + AluSx SINE Alu 1 301 -11 4386 124 22 46 chr1 218431041 218431679 -24232674 + Tigger1 DNA MER2_type 1799 2418 0 508 178 104 55 chr1 218431679 218431842 -24232511 + L1MC4 LINE L1 7842 8012 -30 1849 159 14 0 chr1 218431931 218432214 -24232139 - AluJo SINE Alu -22 290 4 1899 152 3 0 chr1 218433137 218433420 -24230933 - AluJb SINE Alu -15 297 14 211 253 22 33 chr1 218433683 218433774 -24230579 + MIR SINE MIR 103 192 -70 2103 141 0 0 chr1 218434135 218434432 -24229921 - AluSx SINE Alu -15 297 1 24 67 0 0 chr1 218434476 218434521 -24229832 + AT_rich Low_complexity Low_complexity 1 45 0 248 326 0 22 chr1 218434646 218434735 -24229618 + 7SK RNA RNA 12 98 -95 2111 224 167 29 chr1 218435122 218435734 -24228619 + LTR41 LTR ERVL 1 696 -77 1967 96 68 11 chr1 218435762 218436043 -24228310 - AluSq SINE Alu -16 297 1 2116 301 83 38 chr1 218436056 218436996 -24227357 + L2 LINE L2 1124 2105 -1209 5611 146 51 20 chr1 218437184 218437830 -24226523 - L1PB3 LINE L1 -3 6151 5527 225 0 0 0 chr1 218437830 218437855 -24226498 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2140 121 0 0 chr1 218437855 218438137 -24226216 - AluSx SINE Alu -30 282 1 5611 146 51 20 chr1 218438137 218438255 -24226098 - L1PB3 LINE L1 -627 5527 5414 2055 146 3 0 chr1 218438255 218438557 -24225796 - AluSx SINE Alu -9 303 1 5611 146 51 20 chr1 218438557 218439130 -24225223 - L1PB3 LINE L1 -740 5414 4762 975 123 0 29 chr1 218439109 218439279 -24225074 + L1PB3 LINE L1 4603 4767 -1379 * 1409 235 62 176 chr1 218439279 218439337 -24225016 + L2 LINE L2 2100 2163 -1150 2168 110 3 0 chr1 218439337 218439636 -24224717 - AluSg SINE Alu 0 310 11 1409 235 62 176 chr1 218439636 218439730 -24224623 + L2 LINE L2 2163 2266 -1047 1565 169 19 49 chr1 218439730 218440038 -24224315 - AluJo SINE Alu -13 299 1 1409 235 62 176 chr1 218440038 218440292 -24224061 + L2 LINE L2 2266 2547 -766 643 141 33 25 chr1 218440292 218440413 -24223940 - L1MB8 LINE L1 -9 6169 6048 1409 235 62 176 chr1 218440413 218440442 -24223911 + L2 LINE L2 2547 2578 -735 7864 41 6 15 chr1 218440442 218441997 -24222356 - SVA Other Other -799 1385 1 1409 235 62 176 chr1 218441997 218442032 -24222321 + L2 LINE L2 2578 2615 -698 332 222 0 71 chr1 218442032 218442131 -24222222 - L1MB7 LINE L1 -114 6064 5973 1409 235 62 176 chr1 218442131 218442583 -24221770 + L2 LINE L2 2615 3003 -310 1993 143 3 3 chr1 218442614 218442921 -24221432 - AluJb SINE Alu -5 307 1 26 0 0 0 chr1 218442994 218443020 -24221333 + AT_rich Low_complexity Low_complexity 1 26 0 1898 147 10 7 chr1 218443023 218443322 -24221031 - L1PB4 LINE L1 -1 6155 5856 198 194 0 129 chr1 218443459 218443521 -24220832 - MER5A DNA MER1_type 0 189 136 1024 177 4 103 chr1 218443533 218443776 -24220577 + AluJo SINE Alu 1 219 -93 233 286 0 0 chr1 218443822 218443871 -24220482 + MER5A DNA MER1_type 69 117 -72 2116 72 58 17 chr1 218444221 218444512 -24219841 - AluSq SINE Alu -10 303 1 208 304 38 38 chr1 218444519 218444598 -24219755 + L2 LINE L2 3186 3264 -8 335 167 0 15 chr1 218445793 218445859 -24218494 - Alu SINE Alu 0 302 238 2482 121 27 16 chr1 218446149 218446520 -24217833 + THE1C LTR MaLR 1 375 0 296 303 67 13 chr1 218447263 218447412 -24216941 - MER5A DNA MER1_type -16 162 5 1703 158 44 0 chr1 218447642 218447935 -24216418 - AluSx SINE Alu 0 305 1 1672 158 4 22 chr1 218447958 218448236 -24216117 + AluJo SINE Alu 34 306 -6 24 53 0 0 chr1 218448250 218448288 -24216065 + AT_rich Low_complexity Low_complexity 1 38 0 2183 203 6 3 chr1 218448310 218448674 -24215679 - MLT1A1 LTR MaLR 0 365 1 2347 98 0 0 chr1 218448701 218448997 -24215356 + AluSx SINE Alu 1 296 -16 232 190 0 52 chr1 218449015 218449073 -24215280 - L1ME LINE L1 -355 5766 5712 21 57 0 0 chr1 218449073 218449108 -24215245 + AT_rich Low_complexity Low_complexity 1 35 0 2469 169 56 12 chr1 218449122 218449530 -24214823 - MSTB LTR MaLR 0 426 1 251 133 0 67 chr1 218449715 218449760 -24214593 - HERVL LTR ERVL -2098 3556 3515 272 114 0 0 chr1 218449771 218449815 -24214538 - MLT2B1 LTR ERVL -475 45 2 775 222 58 129 chr1 218450030 218450341 -24214012 + MER21B LTR ERV1 22 310 -553 230 286 0 0 chr1 218450308 218450357 -24213996 + MER77 LTR ERV1 277 325 -280 * 2279 125 0 0 chr1 218450407 218450711 -24213642 + AluSx SINE Alu 1 304 -8 868 259 61 50 chr1 218450736 218451079 -24213274 - L2 LINE L2 -612 2702 2356 2122 119 3 19 chr1 218451082 218451394 -24212959 - AluSx SINE Alu -5 307 1 1321 240 161 48 chr1 218451467 218452341 -24212012 - L2 LINE L2 0 3313 2340 638 153 0 0 chr1 218452371 218452469 -24211884 + FLAM_A SINE Alu 4 101 -41 414 292 31 12 chr1 218452469 218452490 -24211863 - L1MA10 LINE L1 -2 6332 6312 921 217 32 64 chr1 218452490 218452739 -24211614 - L1ME2 LINE L1 -14 6150 5910 2287 95 14 0 chr1 218452800 218453096 -24211257 - AluSg SINE Alu -10 300 1 1566 155 48 52 chr1 218453148 218453439 -24210914 - AluJo SINE Alu -22 290 1 2074 142 10 6 chr1 218453617 218453928 -24210425 + AluSx SINE Alu 1 312 0 1836 149 24 7 chr1 218454086 218454375 -24209978 - AluJb SINE Alu -18 294 1 1459 178 11 8 chr1 218454852 218455116 -24209237 + AluJo SINE Alu 17 281 -31 1802 183 151 35 chr1 218455150 218455641 -24208712 - LTR10A LTR ERV1 -61 548 1 569 146 0 0 chr1 218455937 218456033 -24208320 - L1MA5 LINE L1 -5 6295 6200 245 164 0 18 chr1 218456072 218456127 -24208226 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 31 58 0 0 chr1 218457486 218457538 -24206815 + AT_rich Low_complexity Low_complexity 1 52 0 189 0 0 0 chr1 218457543 218457564 -24206789 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2454 64 0 0 chr1 218457636 218457933 -24206420 + AluY SINE Alu 1 297 -14 492 65 90 7 chr1 218458085 218458240 -24206113 + (TA)n Simple_repeat Simple_repeat 1 168 0 1334 98 10 10 chr1 218458347 218458541 -24205812 + AluSp SINE Alu 115 308 -5 21 0 0 0 chr1 218459210 218459231 -24205122 + AT_rich Low_complexity Low_complexity 1 21 0 1773 166 30 3 chr1 218459409 218459711 -24204642 - AluJb SINE Alu -2 310 1 807 310 13 9 chr1 218459732 218459964 -24204389 + MIR SINE MIR 2 234 -28 837 251 55 13 chr1 218460175 218460332 -24204021 - MLT1E LTR MaLR 0 593 444 4854 148 45 24 chr1 218460332 218460743 -24203610 - MER4D LTR ERV1 0 903 502 2271 138 0 0 chr1 218460743 218461048 -24203305 - AluSx SINE Alu -7 305 1 4854 148 45 24 chr1 218461048 218461203 -24203150 - MER4D LTR ERV1 -401 502 352 2203 115 3 7 chr1 218461203 218461498 -24202855 + AluSg SINE Alu 1 294 -16 4854 148 45 24 chr1 218461498 218461814 -24202539 - MER4D LTR ERV1 -551 352 1 837 251 55 13 chr1 218461814 218461891 -24202462 - MLT1E LTR MaLR -149 444 349 340 265 25 16 chr1 218462026 218462159 -24202194 + MER77 LTR ERV1 26 197 -408 * 1139 268 54 64 chr1 218462134 218462746 -24201607 + MER21B LTR ERV1 100 705 -158 627 263 0 12 chr1 218462774 218462934 -24201419 - MLT1E LTR MaLR -435 158 1 493 314 22 38 chr1 218462997 218463182 -24201171 - MIR3 SINE MIR -2 206 25 803 191 0 0 chr1 218463427 218463553 -24200800 - FLAM_C SINE Alu -17 126 1 2265 84 0 3 chr1 218464404 218464709 -24199644 - AluSx SINE Alu 0 304 1 235 251 126 141 chr1 218465425 218465533 -24198820 + MIR SINE MIR 6 114 -148 2230 111 103 23 chr1 218465533 218465864 -24198489 + MSTA LTR MaLR 1 371 -57 2116 122 34 0 chr1 218465864 218466039 -24198314 - AluSg SINE Alu -4 306 115 243 0 0 0 chr1 218466039 218466066 -24198287 + (TG)n Simple_repeat Simple_repeat 2 28 0 2116 122 34 0 chr1 218466066 218466186 -24198167 - AluSg SINE Alu -195 115 1 2230 111 103 23 chr1 218466186 218466250 -24198103 + MSTA LTR MaLR 371 428 0 235 251 126 141 chr1 218466250 218466396 -24197957 + MIR SINE MIR 114 256 -6 331 255 92 35 chr1 218466633 218466774 -24197579 + L2 LINE L2 3123 3271 -1 299 275 35 63 chr1 218467457 218467599 -24196754 - MIR SINE MIR -78 184 47 477 293 48 7 chr1 218468762 218468909 -24195444 - MIR SINE MIR -64 198 46 3288 170 28 66 chr1 218468916 218469230 -24195123 - LTR39 LTR ERV1 -1 782 457 2124 141 0 0 chr1 218469230 218469529 -24194824 + AluSx SINE Alu 1 299 -13 3288 170 28 66 chr1 218469529 218469831 -24194522 - LTR39 LTR ERV1 -326 457 198 942 34 17 0 chr1 218469831 218469950 -24194403 - L1PA4 LINE L1 -1 6154 6034 3288 170 28 66 chr1 218469950 218470085 -24194268 - LTR39 LTR ERV1 -585 198 59 530 278 128 32 chr1 218470585 218470866 -24193487 - L2 LINE L2 -11 3302 2995 2185 91 0 21 chr1 218471106 218471417 -24192936 + AluSg SINE Alu 1 305 0 423 227 125 0 chr1 218471609 218471737 -24192616 + LTR33 LTR ERVL 378 521 0 689 255 30 69 chr1 218472030 218472261 -24192092 + MIR SINE MIR 28 249 -13 2212 118 7 3 chr1 218473190 218473496 -24190857 - AluSx SINE Alu -5 307 1 215 256 100 56 chr1 218473556 218473646 -24190707 + L2 LINE L2 2217 2310 -1004 299 251 98 24 chr1 218473749 218473854 -24190499 + MIR SINE MIR 45 156 -72 1815 107 104 14 chr1 218473862 218474231 -24190122 - LTR7 LTR ERV1 0 450 1 3587 186 38 31 chr1 218474243 218474578 -24189775 + L1 LINE L1 4343 4674 -1472 216 0 0 0 chr1 218474578 218474602 -24189751 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3587 186 38 31 chr1 218474602 218475079 -24189274 + L1 LINE L1 4674 5164 -982 725 191 8 8 chr1 218475079 218475210 -24189143 + FLAM_C SINE Alu 1 131 -2 3587 186 38 31 chr1 218475210 218475274 -24189079 + L1 LINE L1 5164 5226 -920 1952 46 0 0 chr1 218475853 218476093 -24188260 - L1PA4 LINE L1 -3 6152 5913 226 350 0 0 chr1 218476482 218476599 -24187754 + C-rich Low_complexity Low_complexity 1 117 0 1326 229 172 6 chr1 218476992 218477516 -24186837 + L1ME3A LINE L1 5559 6169 -1 1857 56 0 0 chr1 218477521 218477737 -24186616 + AluY SINE Alu 83 298 -13 375 23 0 0 chr1 218477743 218477787 -24186566 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr1 218477849 218477870 -24186483 + AT_rich Low_complexity Low_complexity 1 21 0 866 136 0 7 chr1 218477963 218478103 -24186250 + AluJo SINE Alu 1 139 -173 427 327 71 34 chr1 218478908 218479174 -24185179 + L1MC4 LINE L1 6359 6634 -1408 1832 147 11 37 chr1 218479187 218479541 -24184812 + MER47A DNA MER2_type 22 366 0 1671 163 60 147 chr1 218479632 218479774 -24184579 + L1MC1 LINE L1 5219 5372 -924 2216 122 3 0 chr1 218479774 218480078 -24184275 + AluSx SINE Alu 1 305 -7 1671 163 60 147 chr1 218480078 218480482 -24183871 + L1MC1 LINE L1 5372 5746 -550 2906 135 7 2 chr1 218480483 218480941 -24183412 + L1MC1 LINE L1 5869 6328 -5 340 278 82 63 chr1 218480993 218481075 -24183278 + L1MC4a LINE L1 5567 5646 -2162 2363 85 7 0 chr1 218481075 218481369 -24182984 + AluSx SINE Alu 3 298 -14 340 278 82 63 chr1 218481369 218481462 -24182891 + L1MC4a LINE L1 5646 5736 -2072 2421 60 0 10 chr1 218481462 218481763 -24182590 + AluY SINE Alu 14 311 0 340 278 82 63 chr1 218481763 218481950 -24182403 + L1MC4a LINE L1 5736 5937 -1871 2138 130 0 0 chr1 218482870 218483162 -24181191 - AluSg SINE Alu -18 292 1 1152 116 11 0 chr1 218483803 218483984 -24180369 + MER46B DNA MER2_type 1 58 -178 369 217 0 0 chr1 218483986 218484055 -24180298 + AluS SINE Alu 1 69 -234 814 20 0 0 chr1 218484157 218484257 -24180096 - L1P3 LINE L1 -403 5751 5652 4803 55 20 1 chr1 218484257 218485165 -24179188 + L1P3 LINE L1 4716 5635 -519 184 217 267 0 chr1 218485337 218485397 -24178956 + L2 LINE L2 3238 3313 0 2141 124 7 0 chr1 218485628 218485934 -24178419 - AluSx SINE Alu -4 308 1 507 325 91 4 chr1 218487088 218487319 -24177034 + MIR SINE MIR 2 252 -10 372 338 69 13 chr1 218487520 218487784 -24176569 - L1 LINE L1 -3240 2906 2624 1326 157 181 17 chr1 218487825 218488124 -24176229 + MER7A DNA MER2_type 1 346 0 685 179 37 19 chr1 218488562 218488724 -24175629 - Charlie1b DNA MER1_type 0 523 359 1997 96 3 66 chr1 218488730 218489053 -24175300 + AluSq SINE Alu 1 304 0 410 301 58 10 chr1 218489070 218489276 -24175077 - Charlie1b DNA MER1_type -259 264 49 1852 121 143 0 chr1 218490623 218490938 -24173415 - MER46B DNA MER2_type -1 235 1 441 315 68 45 chr1 218491135 218491618 -24172735 + HAL1b LINE L1 89 582 -766 240 275 58 0 chr1 218492140 218492278 -24172075 + L1M4 LINE L1 2183 2328 -3818 1023 131 0 0 chr1 218493019 218493522 -24170831 + (CATTC)n Satellite Satellite 1 503 0 876 137 3 6 chr1 218493563 218493928 -24170425 + (CATTC)n Satellite Satellite 1 363 0 1065 140 1 13 chr1 218493962 218495121 -24169232 + (CATTC)n Satellite Satellite 1 1144 0 863 130 0 22 chr1 218495153 218495337 -24169016 + (CATTC)n Satellite Satellite 1 180 0 1392 121 3 2 chr1 218495357 218496829 -24167524 + (CATTC)n Satellite Satellite 1 1473 0 990 118 0 0 chr1 218496841 218497011 -24167342 + (CATTC)n Satellite Satellite 2 171 0 1098 134 0 0 chr1 218497044 218497541 -24166812 + (CATTC)n Satellite Satellite 1 497 0 1183 87 7 23 chr1 218497585 218497881 -24166472 + (CATTC)n Satellite Satellite 4 292 0 545 155 43 0 chr1 218497888 218498004 -24166349 + MER67C LTR ERV1 590 710 0 345 187 0 0 chr1 218498199 218498274 -24166079 + CT-rich Low_complexity Low_complexity 2 76 0 2038 122 4 4 chr1 218498275 218498554 -24165799 - AluSp SINE Alu -34 279 1 215 256 100 56 chr1 218498614 218498704 -24165649 + L2 LINE L2 2217 2310 -1004 299 251 98 24 chr1 218498807 218498912 -24165441 + MIR SINE MIR 45 156 -72 1815 107 104 14 chr1 218498920 218499289 -24165064 - LTR7 LTR ERV1 0 450 1 3587 186 38 31 chr1 218499301 218499636 -24164717 + L1 LINE L1 4343 4674 -1472 216 0 0 0 chr1 218499636 218499660 -24164693 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3587 186 38 31 chr1 218499660 218500137 -24164216 + L1 LINE L1 4674 5164 -982 725 191 8 8 chr1 218500137 218500268 -24164085 + FLAM_C SINE Alu 1 131 -2 3587 186 38 31 chr1 218500268 218500332 -24164021 + L1 LINE L1 5164 5226 -920 1988 38 0 0 chr1 218500911 218501151 -24163202 - L1PA4 LINE L1 -3 6152 5913 2991 216 195 9 chr1 218501276 218502286 -24162067 - L1MC4 LINE L1 -142 7900 6703 464 311 88 19 chr1 218502291 218502551 -24161802 - L1MEd LINE L1 -4992 1127 850 189 0 0 0 chr1 218503058 218503079 -24161274 + (TATG)n Simple_repeat Simple_repeat 2 22 0 2273 103 3 0 chr1 218503490 218503790 -24160563 - AluSp SINE Alu -12 301 1 2913 72 3 13 chr1 218504359 218504749 -24159604 + L1PA6 LINE L1 5754 6139 -15 249 241 98 98 chr1 218506694 218506827 -24157526 - MIR SINE MIR -79 183 51 1014 167 43 0 chr1 218508081 218508128 -24156225 + MER3 DNA MER1_type 4 58 -151 317 244 100 44 chr1 218508128 218508288 -24156065 - MER3 DNA MER1_type -3 206 38 784 159 16 0 chr1 218508779 218508905 -24155448 - FRAM SINE Alu -20 156 29 317 271 68 59 chr1 218511481 218511599 -24152754 + L1ME3 LINE L1 5312 5430 -691 776 249 154 21 chr1 218511616 218511993 -24152360 + L1ME3 LINE L1 5646 6072 -90 1188 195 94 3 chr1 218512500 218512787 -24151566 - MER33 DNA MER1_type 0 324 12 448 200 60 20 chr1 218512823 218512923 -24151430 + MER5A DNA MER1_type 4 107 -82 855 205 79 0 chr1 218513112 218513302 -24151051 + MER3 DNA MER1_type 4 208 -1 609 120 0 0 chr1 218514754 218514846 -24149507 - FRAM SINE Alu -16 160 69 387 22 0 0 chr1 218514962 218515008 -24149345 - MER11C LTR ERVK -1022 49 4 2842 227 79 41 chr1 218515027 218515311 -24149042 - MER21B LTR ERV1 -58 805 533 1610 180 0 10 chr1 218515311 218515617 -24148736 - AluJo SINE Alu -9 303 1 2842 227 79 41 chr1 218515617 218515927 -24148426 - MER21B LTR ERV1 -330 533 173 1877 153 0 3 chr1 218515927 218516221 -24148132 + AluSq SINE Alu 1 293 -20 2842 227 79 41 chr1 218516221 218516383 -24147970 - MER21B LTR ERV1 -690 173 19 284 320 0 0 chr1 218516405 218516480 -24147873 - MER21B LTR ERV1 -773 90 16 1477 212 0 7 chr1 218516480 218516777 -24147576 - AluJo SINE Alu -13 299 5 1514 199 14 56 chr1 218516780 218517137 -24147216 + MLT1D LTR MaLR 162 503 -2 1478 196 10 14 chr1 218517158 218517285 -24147068 + AluJb SINE Alu 10 136 -176 2013 107 35 0 chr1 218517285 218517574 -24146779 + AluSg1 SINE Alu 1 299 -10 1478 196 10 14 chr1 218517574 218517737 -24146616 + AluJb SINE Alu 136 299 -13 1452 259 80 32 chr1 218517737 218518346 -24146007 - L2 LINE L2 -216 3097 2458 697 218 0 0 chr1 218518445 218518578 -24145775 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr1 218518578 218518605 -24145748 + AT_rich Low_complexity Low_complexity 1 27 0 1274 247 10 7 chr1 218518605 218518901 -24145452 + AluJo SINE Alu 2 298 -4 340 245 11 11 chr1 218519046 218519140 -24145213 + LTR37A LTR ERV1 240 333 -93 2010 142 0 3 chr1 218519351 218519660 -24144693 - AluSq SINE Alu -5 308 1 1499 189 20 20 chr1 218519962 218520264 -24144089 - AluJo SINE Alu -10 302 1 2721 197 39 35 chr1 218520285 218520905 -24143448 - L1MB8 LINE L1 -5 6173 5552 691 180 0 0 chr1 218520905 218521016 -24143337 + FLAM_A SINE Alu 4 114 -19 487 164 8 102 chr1 218521050 218521138 -24143215 - L1ME LINE L1 -577 5589 5505 1531 187 10 7 chr1 218521138 218521432 -24142921 - AluJb SINE Alu -17 295 1 487 164 8 102 chr1 218521432 218521463 -24142890 - L1ME LINE L1 -661 5505 5473 582 207 0 122 chr1 218521521 218521581 -24142772 + AluJo SINE Alu 24 90 -222 285 89 0 0 chr1 218521581 218521626 -24142727 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1803 135 22 4 chr1 218521626 218521900 -24142453 - AluSx SINE Alu -33 279 1 582 207 0 122 chr1 218521900 218522002 -24142351 + AluJo SINE Alu 88 167 -145 1376 166 123 32 chr1 218522014 218522291 -24142062 - AluJo SINE Alu 0 302 1 1257 238 3 17 chr1 218522544 218522838 -24141515 - AluJo SINE Alu -18 294 5 372 195 25 132 chr1 218522839 218522998 -24141355 - MLT1D LTR MaLR -292 213 72 224 269 129 11 chr1 218523062 218523155 -24141198 - L2 LINE L2 -27 3286 3183 245 302 140 50 chr1 218523182 218523571 -24140782 - L2 LINE L2 -211 3061 2647 181 329 59 7 chr1 218523600 218523752 -24140601 - L2 LINE L2 -1591 1723 1564 1536 188 0 16 chr1 218523772 218524080 -24140273 - AluJb SINE Alu -9 303 1 2237 96 3 0 chr1 218524166 218524469 -24139884 - AluSp SINE Alu -9 304 1 186 43 0 0 chr1 218524495 218524518 -24139835 + (TA)n Simple_repeat Simple_repeat 2 24 0 1771 147 0 3 chr1 218524519 218524804 -24139549 - AluJb SINE Alu -18 294 11 2990 125 9 2 chr1 218525170 218525602 -24138751 + MER1A DNA MER1_type 56 490 -39 706 197 0 0 chr1 218525615 218525732 -24138621 - FLAM_C SINE Alu -18 125 9 665 139 28 0 chr1 218525773 218525881 -24138472 + AluJb SINE Alu 194 304 -8 204 250 96 10 chr1 218526174 218526278 -24138075 - L2 LINE L2 -211 3061 2949 281 388 59 24 chr1 218526553 218526723 -24137630 - MIR SINE MIR -75 187 12 2607 241 47 37 chr1 218526828 218527073 -24137280 - MER21B LTR ERV1 -112 751 510 1497 214 0 3 chr1 218527073 218527377 -24136976 - AluJo SINE Alu -9 303 1 2607 241 47 37 chr1 218527377 218527447 -24136906 - MER21B LTR ERV1 -353 510 442 1247 194 48 51 chr1 218527447 218527741 -24136612 + AluJb SINE Alu 2 294 -18 2607 241 47 37 chr1 218527741 218528150 -24136203 - MER21B LTR ERV1 -421 442 19 352 254 0 0 chr1 218528176 218528247 -24136106 - MER21B LTR ERV1 -777 86 16 978 217 43 5 chr1 218528247 218528454 -24135899 - AluJb SINE Alu -13 299 85 417 183 0 0 chr1 218528465 218528536 -24135817 - FLAM SINE Alu -28 115 45 698 217 0 0 chr1 218528536 218528656 -24135697 - FLAM_A SINE Alu -13 120 1 644 228 0 7 chr1 218528661 218528797 -24135556 - FLAM_C SINE Alu -7 136 2 1559 166 25 57 chr1 218528797 218529111 -24135242 + MLT1D LTR MaLR 162 465 -40 261 200 44 44 chr1 218529245 218529335 -24135018 + LTR33A LTR ERVL 432 521 -2 2467 136 72 21 chr1 218529581 218529999 -24134354 + MER1A DNA MER1_type 1 439 -90 2098 115 0 0 chr1 218531434 218531739 -24132614 + AluSg SINE Alu 1 305 -5 458 155 0 0 chr1 218534825 218534909 -24129444 - AluSq SINE Alu 0 313 230 911 124 21 7 chr1 218534911 218535056 -24129297 - AluSq SINE Alu -161 151 5 919 241 45 4 chr1 218535063 218535500 -24128853 - L1M2 LINE L1 -4226 2563 2023 751 100 8 54 chr1 218535507 218535637 -24128716 - AluSg/x SINE Alu 0 312 189 1060 120 0 6 chr1 218535762 218535920 -24128433 + AluSc SINE Alu 136 292 -17 1151 146 60 121 chr1 218535960 218536275 -24128078 + AluJb SINE Alu 2 297 -5 393 183 101 38 chr1 218536361 218536477 -24127876 + AluJ/FLAM SINE Alu 2 89 -213 1152 141 5 34 chr1 218536479 218536685 -24127668 - AluJb SINE Alu -112 200 1 531 211 0 9 chr1 218536744 218536853 -24127500 - AluSg/x SINE Alu -23 286 179 2025 88 3 20 chr1 218536906 218537201 -24127152 - AluSg SINE Alu -20 290 1 230 159 159 0 chr1 218538096 218538159 -24126194 + AluJb SINE Alu 45 117 -185 489 182 0 20 chr1 218538185 218538284 -24126069 + FRAM SINE Alu 63 159 -17 925 65 29 29 chr1 218538344 218538482 -24125871 + AluJo SINE Alu 23 160 -152 597 170 7 92 chr1 218538489 218538630 -24125723 - FLAM_C SINE Alu 0 133 5 1866 110 11 0 chr1 218538670 218538943 -24125410 + AluSx SINE Alu 2 277 -35 830 233 10 5 chr1 218538945 218539151 -24125202 + AluJo SINE Alu 76 282 -30 1825 134 0 17 chr1 218539904 218540194 -24124159 - AluSq SINE Alu -8 305 21 274 341 143 16 chr1 218540316 218540630 -24123723 - L2 LINE L2 -337 2977 2624 1659 114 0 12 chr1 218540838 218541093 -24123260 - AluSx SINE Alu -6 306 55 240 194 0 0 chr1 218541113 218541175 -24123178 - L1M4 LINE L1 -964 5182 5121 2231 96 7 3 chr1 218541210 218541512 -24122841 - AluSx SINE Alu -9 303 1 1077 198 20 124 chr1 218541549 218541685 -24122668 + AluYb8 SINE Alu 3 151 -167 1806 88 8 4 chr1 218541685 218541936 -24122417 + L1PB1 LINE L1 5898 6149 -2 1077 198 20 124 chr1 218541936 218542147 -24122206 + AluYb8 SINE Alu 151 314 -4 1247 174 55 4 chr1 218542515 218542750 -24121603 + AluJo SINE Alu 34 280 -32 2332 62 0 3 chr1 218542751 218543041 -24121312 - AluY SINE Alu -22 289 1 23 0 0 0 chr1 218543052 218543075 -24121278 + AT_rich Low_complexity Low_complexity 1 23 0 1409 171 73 7 chr1 218543078 218543353 -24121000 + AluJb SINE Alu 1 293 -19 385 262 43 14 chr1 218544377 218544518 -24119835 - L2 LINE L2 -974 2340 2196 632 135 193 140 chr1 218544535 218544693 -24119660 + MER20 DNA MER1_type 2 175 -44 1759 136 3 48 chr1 218544693 218544823 -24119530 + AluJb SINE Alu 1 135 -177 2180 96 0 3 chr1 218544823 218545116 -24119237 - AluSg SINE Alu -18 292 1 1759 136 3 48 chr1 218545116 218545294 -24119059 + AluJb SINE Alu 135 295 -17 632 135 193 140 chr1 218545294 218545342 -24119011 + MER20 DNA MER1_type 175 219 0 1873 118 0 62 chr1 218545429 218545751 -24118602 - AluSx SINE Alu -10 302 1 2064 119 3 3 chr1 218546175 218546469 -24117884 + AluSp SINE Alu 1 294 -19 460 155 28 0 chr1 218546609 218546680 -24117673 + MER2 DNA MER2_type 272 344 -1 2212 99 0 0 chr1 218546702 218547005 -24117348 + AluSg SINE Alu 1 303 -7 449 134 247 0 chr1 218547041 218547138 -24117215 + FLAM_C SINE Alu 11 131 -12 424 214 95 89 chr1 218547316 218547455 -24116898 - HAL1 LINE L1 -1320 1187 1045 1976 114 6 44 chr1 218547455 218547623 -24116730 - AluSx SINE Alu -9 303 151 2018 111 10 0 chr1 218547623 218547921 -24116432 - AluSp SINE Alu -12 301 1 1976 114 6 44 chr1 218547921 218548067 -24116286 - AluSx SINE Alu -161 151 1 424 214 95 89 chr1 218548067 218548095 -24116258 - HAL1 LINE L1 -1462 1045 1019 556 210 20 0 chr1 218548101 218548201 -24116152 + Tigger3(Golem) DNA MER2_type 1 102 -2927 2253 115 42 42 chr1 218548219 218548393 -24115960 - MER6A DNA MER2_type -264 601 428 2152 86 3 41 chr1 218548393 218548708 -24115645 - AluSx SINE Alu -9 303 1 2253 115 42 42 chr1 218548708 218548933 -24115420 - MER6A DNA MER2_type -436 429 202 1996 121 3 10 chr1 218548933 218549230 -24115123 - AluSc SINE Alu -14 295 1 1744 159 10 3 chr1 218549230 218549526 -24114827 - AluJo SINE Alu -14 298 1 1872 129 3 26 chr1 218549540 218549843 -24114510 - AluSx SINE Alu -16 296 1 2279 73 0 38 chr1 218549852 218550165 -24114188 - AluY SINE Alu -10 301 1 1738 187 27 10 chr1 218550165 218550455 -24113898 - MER6A DNA MER2_type -761 104 67 822 178 27 73 chr1 218550455 218550674 -24113679 - AluSg/x SINE Alu 0 309 101 303 152 0 0 chr1 218550679 218550755 -24113598 - AluJ/FRAM SINE Alu 0 308 233 1743 144 14 0 chr1 218550755 218551039 -24113314 - AluSx SINE Alu -23 289 2 1062 82 0 0 chr1 218551039 218551174 -24113179 - AluSq/x SINE Alu -177 135 1 245 103 0 0 chr1 218551178 218551217 -24113136 - MER6A DNA MER2_type -538 67 29 * 286 64 43 0 chr1 218551212 218551259 -24113094 + Tigger3(Golem) DNA MER2_type 2458 2506 -523 410 156 52 52 chr1 218551259 218551336 -24113017 - AluJ/FLAM SINE Alu -232 80 4 2245 95 0 0 chr1 218551344 218551638 -24112715 - AluSx SINE Alu -18 294 1 29 0 0 0 chr1 218551640 218551669 -24112684 + AT_rich Low_complexity Low_complexity 1 29 0 783 197 0 20 chr1 218551669 218551816 -24112537 + FRAM SINE Alu 18 161 -15 2366 137 117 2 chr1 218551816 218552217 -24112136 + Tigger3(Golem) DNA MER2_type 2583 3029 0 2368 61 3 0 chr1 218552221 218552517 -24111836 - AluY SINE Alu -14 297 1 1223 124 6 0 chr1 218552545 218552723 -24111630 - AluSq SINE Alu -50 263 85 2253 92 0 3 chr1 218552750 218553045 -24111308 - AluSx SINE Alu -18 294 1 1303 256 59 51 chr1 218553227 218553605 -24110748 + L1MC4 LINE L1 7512 7886 -156 1606 159 14 20 chr1 218553605 218553901 -24110452 - AluJo SINE Alu -18 294 1 462 65 0 0 chr1 218553904 218553966 -24110387 + (TATG)n Simple_repeat Simple_repeat 2 63 0 2131 87 4 0 chr1 218553969 218554246 -24110107 - AluSc SINE Alu -31 278 1 1303 256 59 51 chr1 218554246 218554386 -24109967 + L1MC4 LINE L1 7888 8042 0 1706 102 0 13 chr1 218554625 218554861 -24109492 + AluSc SINE Alu 1 233 -76 631 109 55 27 chr1 218554863 218554973 -24109380 + FLAM_A SINE Alu 30 142 0 644 255 103 20 chr1 218555230 218555434 -24108919 + MER58A DNA MER1_type 4 224 0 1923 121 0 0 chr1 218555468 218555741 -24108612 - AluSx SINE Alu -18 294 22 746 263 55 18 chr1 218555942 218556159 -24108194 - HAL1 LINE L1 -2188 319 95 2240 92 7 0 chr1 218556161 218556464 -24107889 - AluSg SINE Alu -5 305 1 2258 96 0 0 chr1 218557151 218557443 -24106910 + AluSg SINE Alu 1 292 -18 1487 104 5 0 chr1 218557445 218557656 -24106697 + AluSg/x SINE Alu 81 292 -20 2157 95 3 3 chr1 218557757 218558051 -24106302 - AluSp SINE Alu -19 294 1 2090 119 3 0 chr1 218558179 218558474 -24105879 + AluSg SINE Alu 1 296 -14 310 203 40 88 chr1 218558499 218558647 -24105706 - MIR SINE MIR 0 262 122 1701 168 3 3 chr1 218558657 218558960 -24105393 - AluJb SINE Alu -9 303 1 194 0 39 0 chr1 218559025 218559051 -24105302 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1320 120 167 8 chr1 218559057 218559315 -24105038 + AluSg1 SINE Alu 1 299 -10 1868 117 71 0 chr1 218559371 218559654 -24104699 + AluSx SINE Alu 1 303 -9 1804 94 14 28 chr1 218559795 218560083 -24104270 - L1MB3 LINE L1 0 6183 5900 1118 120 0 0 chr1 218560093 218560251 -24104102 - AluSq SINE Alu -17 296 139 2257 109 0 0 chr1 218560252 218560565 -24103788 - AluSq SINE Alu 0 313 1 26 0 0 0 chr1 218560663 218560689 -24103664 + AT_rich Low_complexity Low_complexity 1 26 0 2173 108 3 3 chr1 218561050 218561355 -24102998 + AluSg SINE Alu 1 305 -5 1906 75 41 41 chr1 218561629 218561770 -24102583 + AluSg SINE Alu 2 142 -168 2280 72 7 16 chr1 218561770 218562077 -24102276 + AluSx SINE Alu 1 304 -8 1906 75 41 41 chr1 218562077 218562228 -24102125 + AluSg SINE Alu 141 294 -16 21 0 0 0 chr1 218562827 218562848 -24101505 + AT_rich Low_complexity Low_complexity 1 21 0 249 111 0 0 chr1 218562946 218562982 -24101371 - L1ME3A LINE L1 -7 6163 6128 237 153 180 160 chr1 218563030 218563089 -24101264 - L1ME3A LINE L1 -52 6118 6062 1102 159 52 26 chr1 218563089 218563322 -24101031 + L1MB3 LINE L1 5941 6179 -4 237 153 180 160 chr1 218563322 218563412 -24100941 - L1ME3A LINE L1 -108 6062 5966 1823 154 7 0 chr1 218563806 218564111 -24100242 + AluJb SINE Alu 1 307 -5 1028 120 0 46 chr1 218564147 218564322 -24100031 - AluSg/x SINE Alu 0 310 144 368 113 75 0 chr1 218564324 218564377 -24099976 + AluSg/x SINE Alu 193 249 -51 765 167 117 0 chr1 218564377 218564539 -24099814 + AluJo SINE Alu 98 278 -34 1967 131 0 0 chr1 218565219 218565509 -24098844 - AluSx SINE Alu -21 291 2 503 242 65 0 chr1 218565650 218565774 -24098579 + MIR SINE MIR 97 228 -34 1603 178 10 16 chr1 218566176 218566490 -24097863 - AluJb SINE Alu 0 312 1 2076 125 3 6 chr1 218566672 218566985 -24097368 + AluSx SINE Alu 1 312 0 827 154 0 0 chr1 218567040 218567170 -24097183 + AluJo SINE Alu 5 134 -178 764 133 0 0 chr1 218567567 218567680 -24096673 + AluSg/x SINE Alu 180 292 -18 22 0 0 0 chr1 218567738 218567760 -24096593 + AT_rich Low_complexity Low_complexity 1 22 0 588 211 0 47 chr1 218568102 218568230 -24096123 - FLAM_C SINE Alu -20 123 2 1774 160 7 3 chr1 218568354 218568661 -24095692 - AluJb SINE Alu -4 308 1 1599 155 64 0 chr1 218569480 218569744 -24094609 + AluJo SINE Alu 2 282 -30 2336 70 6 16 chr1 218569760 218570072 -24094281 - AluY SINE Alu -2 309 1 207 0 0 0 chr1 218570086 218570109 -24094244 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2055 80 4 11 chr1 218570118 218570394 -24093959 - AluSg SINE Alu -36 274 1 21 0 0 0 chr1 218570422 218570443 -24093910 + AT_rich Low_complexity Low_complexity 1 21 0 2425 51 0 0 chr1 218570991 218571287 -24093066 - AluY SINE Alu -15 296 1 2235 97 0 3 chr1 218571517 218571816 -24092537 - AluSg SINE Alu -12 298 1 1697 196 0 0 chr1 218572007 218572319 -24092034 + AluJb SINE Alu 1 312 0 2070 95 0 49 chr1 218572392 218572697 -24091656 + AluSg SINE Alu 2 291 -19 711 201 24 71 chr1 218572712 218572811 -24091542 + L1ME LINE L1 5431 5521 -643 2023 95 3 7 chr1 218572811 218573126 -24091227 - AluSp SINE Alu 0 314 1 711 201 24 71 chr1 218573126 218573194 -24091159 + L1ME LINE L1 5521 5591 -573 2137 87 3 29 chr1 218573563 218573872 -24090481 - AluSq SINE Alu -12 301 1 524 158 12 0 chr1 218573890 218573972 -24090381 - AluJ/FLAM SINE Alu -228 84 2 2009 122 30 0 chr1 218573977 218574273 -24090080 - AluSx SINE Alu -7 305 1 581 163 7 82 chr1 218575192 218575237 -24089116 - L1MB2 LINE L1 -7 6164 6117 2196 95 0 16 chr1 218575237 218575542 -24088811 - AluSx SINE Alu -12 300 1 581 163 7 82 chr1 218575542 218575643 -24088710 - L1MB2 LINE L1 -54 6117 6029 261 269 0 0 chr1 218575643 218575710 -24088643 + A-rich Low_complexity Low_complexity 1 67 0 541 156 52 0 chr1 218575710 218575806 -24088547 - L1MB2 LINE L1 -130 6041 5941 2663 16 0 0 chr1 218576249 218576554 -24087799 - AluY SINE Alu -6 305 1 427 255 69 34 chr1 218576809 218577013 -24087340 + L2 LINE L2 2842 3052 -261 550 242 106 25 chr1 218577032 218577193 -24087160 - LTR16C LTR ERVL -13 478 305 226 263 38 0 chr1 218577228 218577308 -24087045 + L1ME3 LINE L1 6067 6149 -13 2114 119 0 6 chr1 218577317 218577628 -24086725 - AluSx SINE Alu -3 309 1 684 174 129 0 chr1 218577629 218577761 -24086592 - AluJb SINE Alu -17 295 147 566 155 10 10 chr1 218577761 218577858 -24086495 + MER4A LTR ERV1 1 97 -567 2290 78 3 0 chr1 218577877 218578172 -24086181 + AluY SINE Alu 1 296 -15 1093 118 290 23 chr1 218578175 218578396 -24085957 + MER4A LTR ERV1 260 539 -125 2226 90 3 0 chr1 218578401 218578700 -24085653 + AluSq SINE Alu 6 305 -8 1511 97 0 0 chr1 218578711 218578906 -24085447 + AluSx SINE Alu 1 195 -117 203 286 174 45 chr1 218579103 218579281 -24085072 - L2 LINE L2 0 3272 3072 253 242 137 11 chr1 218579340 218579435 -24084918 - MIR SINE MIR -76 186 80 1420 175 47 11 chr1 218579632 218579802 -24084551 - AluJb SINE Alu 0 308 122 2084 109 0 23 chr1 218579802 218580104 -24084249 - AluSg SINE Alu -15 295 1 1420 175 47 11 chr1 218580104 218580231 -24084122 - AluJb SINE Alu -186 122 1 1493 171 3 78 chr1 218580748 218580893 -24083460 + AluJb SINE Alu 1 155 -157 2179 62 4 0 chr1 218580893 218581169 -24083184 + AluY SINE Alu 30 306 -5 2109 118 0 0 chr1 218581179 218581476 -24082877 + AluSq SINE Alu 1 297 -16 1493 171 3 78 chr1 218581476 218581641 -24082712 + AluJb SINE Alu 164 298 -14 2538 45 0 3 chr1 218582183 218582493 -24081860 + AluY SINE Alu 1 309 -2 2175 117 0 3 chr1 218582558 218582867 -24081486 + AluSq SINE Alu 1 308 -5 836 129 0 29 chr1 218582923 218583063 -24081290 + AluSg/x SINE Alu 145 280 -32 428 250 40 74 chr1 218583151 218583327 -24081026 - MIR SINE MIR -79 183 14 352 287 271 6 chr1 218583803 218583984 -24080369 - MIR SINE MIR -9 253 25 1228 137 0 6 chr1 218584027 218584210 -24080143 + AluSx SINE Alu 1 182 -130 508 257 21 127 chr1 218584385 218584577 -24079776 + MIR SINE MIR 6 160 -102 1976 125 0 14 chr1 218584577 218584873 -24079480 + AluJb SINE Alu 12 303 -9 508 257 21 127 chr1 218584873 218584964 -24079389 + MIR SINE MIR 160 259 -3 198 354 116 53 chr1 218585076 218585378 -24078975 - L2 LINE L2 -18 3254 2934 826 131 0 114 chr1 218585402 218585503 -24078850 - AluSc SINE Alu -27 282 208 2344 47 13 0 chr1 218585503 218585801 -24078552 + AluY SINE Alu 1 302 -9 826 131 0 114 chr1 218585801 218585874 -24078479 - AluSc SINE Alu -101 208 128 218 254 85 0 chr1 218586093 218586152 -24078201 - L2 LINE L2 -1051 2263 2200 2236 81 0 3 chr1 218586161 218586470 -24077883 - AluY SINE Alu -3 308 1 1866 108 35 11 chr1 218586470 218586756 -24077597 - AluSg SINE Alu -15 295 3 1200 157 157 27 chr1 218587096 218587243 -24077110 - AluJo SINE Alu -17 295 169 1920 127 0 62 chr1 218587243 218587566 -24076787 + AluSx SINE Alu 1 303 -9 1200 157 157 27 chr1 218587566 218587679 -24076674 - AluJo SINE Alu -143 169 1 2083 110 0 28 chr1 218588254 218588573 -24075780 - AluSx SINE Alu -1 311 2 2183 89 13 7 chr1 218589449 218589753 -24074600 + AluSx SINE Alu 1 306 -6 550 193 55 18 chr1 218589829 218589938 -24074415 + AluJb SINE Alu 5 117 -195 2136 96 3 7 chr1 218589941 218590233 -24074120 - AluSx SINE Alu -17 295 5 1643 138 21 17 chr1 218590343 218590632 -24073721 + AluJo SINE Alu 23 312 0 1566 115 0 0 chr1 218590768 218590994 -24073359 + AluSg/x SINE Alu 84 309 -3 2002 176 94 3 chr1 218592259 218592934 -24071419 + L1MB8 LINE L1 4877 5605 -579 530 145 12 0 chr1 218592936 218593039 -24071314 + L1MB8 LINE L1 5778 5882 -298 22 35 0 0 chr1 218593039 218593068 -24071285 + AT_rich Low_complexity Low_complexity 1 29 0 964 157 0 0 chr1 218593081 218593234 -24071119 - FRAM SINE Alu -26 150 1 888 141 0 15 chr1 218593248 218593383 -24070970 + FLAM_C SINE Alu 1 133 0 1544 161 43 10 chr1 218593390 218593689 -24070664 + L1MB8 LINE L1 5864 6172 -6 1273 184 81 4 chr1 218593689 218593961 -24070392 + AluJo SINE Alu 1 293 -19 2141 103 3 0 chr1 218594016 218594316 -24070037 - AluSx SINE Alu -11 301 1 2419 72 0 0 chr1 218594605 218594911 -24069442 - AluY SINE Alu -5 306 1 1436 151 8 20 chr1 218595029 218595281 -24069072 - AluJb SINE Alu -22 290 42 503 182 231 28 chr1 218595282 218595425 -24068928 - AluJo SINE Alu -137 175 4 1592 128 50 28 chr1 218595549 218595831 -24068522 + AluSx SINE Alu 1 288 -24 501 188 125 0 chr1 218595882 218595994 -24068359 + FAM SINE Alu 33 158 -27 1085 143 6 11 chr1 218596052 218596227 -24068126 + AluJb SINE Alu 3 176 -136 324 0 0 0 chr1 218596336 218596372 -24067981 + (TG)n Simple_repeat Simple_repeat 2 37 0 721 137 8 26 chr1 218596372 218596489 -24067864 - FLAM_C SINE Alu -18 115 1 2112 102 0 13 chr1 218596526 218596841 -24067512 + AluSx SINE Alu 1 311 -1 227 351 64 0 chr1 218596956 218597050 -24067303 + MIR SINE MIR 132 231 -31 213 226 12 24 chr1 218598060 218598144 -24066209 + (CGG)n Simple_repeat Simple_repeat 2 84 0 27 0 0 0 chr1 218598152 218598179 -24066174 + GC_rich Low_complexity Low_complexity 1 27 0 1181 210 65 46 chr1 218598908 218598968 -24065385 + L1MC5 LINE L1 7317 7374 -587 1878 124 3 10 chr1 218598968 218599274 -24065079 + AluSx SINE Alu 3 306 -6 1181 210 65 46 chr1 218599274 218599580 -24064773 + L1MC5 LINE L1 7374 7690 -271 1517 184 69 4 chr1 218599586 218599863 -24064490 - AluJb SINE Alu -7 295 1 1468 171 0 67 chr1 218600385 218600516 -24063837 + AluJo SINE Alu 7 145 -167 2138 70 13 13 chr1 218600516 218600814 -24063539 + AluY SINE Alu 2 299 -12 1468 171 0 67 chr1 218600814 218601010 -24063343 + AluJo SINE Alu 145 312 0 2077 109 3 0 chr1 218601048 218601341 -24063012 - AluSx SINE Alu -18 294 1 2186 101 7 0 chr1 218601831 218602137 -24062216 + AluSg1 SINE Alu 1 308 -1 1233 136 0 0 chr1 218602544 218602735 -24061618 - AluSg/x SINE Alu 0 312 122 1238 124 0 0 chr1 218602839 218603017 -24061336 + AluSg/x SINE Alu 122 299 -13 1666 182 70 35 chr1 218603237 218603610 -24060743 - MLT1B LTR MaLR -4 386 1 239 190 17 0 chr1 218603949 218604007 -24060346 - L1MD3 LINE L1 0 7995 7937 1845 212 134 36 chr1 218604026 218604220 -24060133 - L1MC4 LINE L1 -152 7890 7716 2080 162 6 6 chr1 218604220 218604553 -24059800 + MER1B DNA MER1_type 5 337 0 1845 212 134 36 chr1 218604553 218604947 -24059406 - L1MC4 LINE L1 -326 7716 7244 311 171 186 0 chr1 218604948 218605018 -24059335 - L1MC4 LINE L1 -987 7055 6973 820 145 0 36 chr1 218605228 218605366 -24058987 + FLAM_C SINE Alu 1 133 0 2058 88 25 0 chr1 218605375 218605659 -24058694 + AluSx SINE Alu 1 291 -21 2328 84 3 0 chr1 218605947 218606244 -24058109 + AluSc SINE Alu 1 298 -11 230 314 49 20 chr1 218606995 218607097 -24057256 + MLT1J LTR MaLR 121 225 -286 2275 125 0 0 chr1 218608115 218608427 -24055926 - AluSx SINE Alu 0 312 1 228 315 157 0 chr1 218608428 218608517 -24055836 + L2 LINE L2 3169 3271 -1 2092 140 10 0 chr1 218608630 218608922 -24055431 + AluSq SINE Alu 3 297 -16 1963 132 24 10 chr1 218608955 218609244 -24055109 + AluJb SINE Alu 3 295 -17 2398 92 0 0 chr1 218609278 218609572 -24054781 + AluSg SINE Alu 1 294 -16 1135 221 179 40 chr1 218609598 218610073 -24054280 + L1ME3A LINE L1 5630 6170 0 2097 139 0 0 chr1 218610077 218610378 -24053975 + AluSx SINE Alu 1 301 -11 2372 77 3 13 chr1 218610411 218610711 -24053642 + AluY SINE Alu 1 297 -14 1227 131 106 5 chr1 218611565 218611764 -24052589 + AluSg/x SINE Alu 85 303 -9 180 338 49 21 chr1 218611836 218611978 -24052375 + L2 LINE L2 2831 2976 -296 2285 88 14 0 chr1 218612193 218612487 -24051866 - AluSx SINE Alu -14 298 1 889 129 8 0 chr1 218613124 218613256 -24051097 + AluJ SINE Alu 1 133 -169 2362 114 0 0 chr1 218613266 218613574 -24050779 + AluSx SINE Alu 1 308 -4 30 0 0 0 chr1 218613574 218613604 -24050749 + AT_rich Low_complexity Low_complexity 1 30 0 884 155 62 62 chr1 218613610 218613803 -24050550 + AluJ SINE Alu 120 312 0 2444 93 0 0 chr1 218613870 218614181 -24050172 - AluY SINE Alu 0 311 1 1589 191 11 4 chr1 218614213 218614491 -24049862 + AluJb SINE Alu 1 280 -32 2164 139 3 3 chr1 218614492 218614801 -24049552 - AluSx SINE Alu -3 309 1 1918 171 0 3 chr1 218615107 218615417 -24048936 + AluSx SINE Alu 1 309 -3 2286 98 0 0 chr1 218615419 218615715 -24048638 + AluSg SINE Alu 1 296 -14 2410 97 0 0 chr1 218615960 218616259 -24048094 - AluSg SINE Alu -11 299 1 221 0 35 0 chr1 218616259 218616288 -24048065 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1793 158 7 4 chr1 218616291 218616564 -24047789 - AluJb SINE Alu -30 282 9 1027 148 25 0 chr1 218616607 218616769 -24047584 + AluSg/x SINE Alu 131 296 -14 305 278 92 58 chr1 218616788 218616835 -24047518 - MIR3 SINE MIR -7 201 157 450 272 59 12 chr1 218616835 218617004 -24047349 + MER5B DNA MER1_type 2 178 0 305 278 92 58 chr1 218617004 218617129 -24047224 - MIR3 SINE MIR -51 157 23 296 143 20 50 chr1 218617607 218617696 -24046657 - 7SLRNA srpRNA srpRNA -6 314 238 386 209 198 39 chr1 218617930 218618112 -24046241 + HAL1 LINE L1 1663 1873 -634 2488 84 0 0 chr1 218618749 218619046 -24045307 - AluSx SINE Alu -15 297 1 467 234 97 142 chr1 218619865 218620147 -24044206 - L2 LINE L2 -1 3312 3052 2612 59 3 0 chr1 218620147 218620451 -24043902 + AluSp SINE Alu 2 306 -7 467 234 97 142 chr1 218620451 218620570 -24043783 - L2 LINE L2 -261 3052 2929 225 103 0 26 chr1 218621035 218621074 -24043279 + Alu SINE Alu 1 38 -261 2022 134 21 0 chr1 218621201 218621491 -24042862 - AluSx SINE Alu -16 296 1 1809 79 162 0 chr1 218621580 218621833 -24042520 - AluSp SINE Alu -9 294 1 480 35 0 0 chr1 218621975 218622033 -24042320 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 553 185 0 0 chr1 218622035 218622116 -24042237 - AluY SINE Alu -31 280 200 1138 120 7 0 chr1 218622117 218622267 -24042086 - AluSg SINE Alu -159 151 1 312 244 100 0 chr1 218622372 218622462 -24041891 + MIR SINE MIR 66 164 -98 251 154 58 0 chr1 218622462 218622514 -24041839 - MER69 DNA AcHobo -2441 85 31 246 286 0 0 chr1 218622708 218622771 -24041582 + LTR16C LTR ERVL 188 250 -241 331 179 15 15 chr1 218622806 218622873 -24041480 + AluJo SINE Alu 45 111 -191 239 130 0 65 chr1 218622902 218622945 -24041408 + AluJo SINE Alu 108 147 -155 265 170 0 0 chr1 218622945 218622998 -24041355 - MER4A LTR ERV1 0 664 612 475 165 59 0 chr1 218623000 218623085 -24041268 + AluS SINE Alu 2 91 -222 299 104 21 0 chr1 218623085 218623133 -24041220 - MER4B LTR ERV1 -87 523 475 890 209 0 0 chr1 218673166 218673314 -23991039 + AluJo SINE Alu 142 289 -23 326 223 3 0 chr1 218673315 218673404 -23990949 - L1M4 LINE L1 -4841 2014 1924 273 70 70 70 chr1 218673396 218673453 -23990900 - L1M4 LINE L1 -5448 1411 1355 * 1554 153 20 58 chr1 218673459 218673754 -23990599 - AluJb SINE Alu -20 292 9 1873 141 0 0 chr1 218673786 218674055 -23990298 - AluSx SINE Alu -30 282 14 463 237 59 0 chr1 218674072 218674224 -23990129 - L1ME3 LINE L1 -272 6170 6010 1088 193 0 17 chr1 218674225 218674406 -23989947 - FAM SINE Alu -2 47 1 2230 104 3 3 chr1 218674643 218674940 -23989413 - AluSp SINE Alu -16 297 1 2045 121 19 25 chr1 218674941 218675256 -23989097 - AluSq SINE Alu 0 313 1 1313 201 33 49 chr1 218675599 218675903 -23988450 - AluJo SINE Alu -13 299 1 1831 196 24 112 chr1 218676117 218676694 -23987659 - L1ME3 LINE L1 -1141 5285 4659 1799 168 26 0 chr1 218676694 218676998 -23987355 - AluJb SINE Alu 0 312 1 1831 196 24 112 chr1 218676998 218677125 -23987228 - L1ME3 LINE L1 -1767 4659 4656 2196 109 14 0 chr1 218677125 218677419 -23986934 - AluSx SINE Alu -14 298 1 1831 196 24 112 chr1 218677419 218677506 -23986847 - L1ME3 LINE L1 -1770 4656 4563 638 222 26 0 chr1 218677636 218677789 -23986564 - L1ME3 LINE L1 -6269 157 1 22 56 0 0 chr1 218677798 218677834 -23986519 + AT_rich Low_complexity Low_complexity 1 36 0 916 204 0 0 chr1 218677834 218677991 -23986362 - AluJb SINE Alu -23 289 133 180 0 0 0 chr1 218678108 218678128 -23986225 + (T)n Simple_repeat Simple_repeat 1 20 0 467 234 101 32 chr1 218678128 218678316 -23986037 - L1ME LINE L1 -610 5554 5354 387 255 45 19 chr1 218678326 218678483 -23985870 - L1ME LINE L1 -1070 5076 4916 7814 50 8 99 chr1 218678498 218679666 -23984687 - SVA Other Other 0 1386 326 189 0 0 0 chr1 218679767 218679788 -23984565 + (GGGAGA)n Simple_repeat Simple_repeat 5 25 0 1361 163 6 110 chr1 218679918 218680255 -23984098 + AluSx SINE Alu 1 302 0 1266 167 40 5 chr1 218680470 218680692 -23983661 + MER30 DNA MER1_type 1 230 0 1264 123 42 5 chr1 218680705 218680917 -23983436 - pTR5 LTR ERV1 -2048 390 171 310 202 32 21 chr1 218680919 218681013 -23983340 - LTR30 LTR ERV1 -80 642 548 4867 116 56 29 chr1 218681013 218682108 -23982245 - pTR5 LTR ERV1 -409 2029 743 2361 90 6 0 chr1 218682346 218682657 -23981696 - AluSp SINE Alu 0 313 1 28 61 0 0 chr1 218686319 218686368 -23977985 + AT_rich Low_complexity Low_complexity 1 49 0 2315 93 3 0 chr1 218687396 218687696 -23976657 - AluSg SINE Alu -4 306 6 2068 111 7 33 chr1 218687762 218688069 -23976284 - AluSq SINE Alu -14 299 1 23 33 0 0 chr1 218689331 218689361 -23974992 + AT_rich Low_complexity Low_complexity 1 30 0 2269 90 6 26 chr1 218689535 218689846 -23974507 - AluSq SINE Alu -6 307 3 26 50 0 0 chr1 218689956 218689996 -23974357 + AT_rich Low_complexity Low_complexity 1 40 0 2314 101 10 0 chr1 218690505 218690803 -23973550 + AluSq SINE Alu 1 301 -12 299 309 168 35 chr1 218691307 218691592 -23972761 - L3 LINE CR1 -35 1542 1220 296 241 11 35 chr1 218692502 218692589 -23971764 - MIR SINE MIR -7 255 171 405 204 194 0 chr1 218692615 218692713 -23971640 - AluSg SINE Alu -193 117 1 766 280 76 5 chr1 218692721 218692932 -23971421 + L2 LINE L2 2109 2334 -980 1483 181 4 12 chr1 218692940 218693199 -23971154 - AluJo SINE Alu -55 257 1 1877 194 69 15 chr1 218693204 218693683 -23970670 + L1M4 LINE L1 3926 4430 -1716 543 320 186 34 chr1 218693685 218693927 -23970426 + L2 LINE L2 2389 2593 -720 2114 136 7 0 chr1 218693927 218694229 -23970124 - AluSq SINE Alu -9 304 1 543 320 186 34 chr1 218694229 218694639 -23969714 + L2 LINE L2 2593 3149 -164 443 258 30 23 chr1 218694722 218694854 -23969499 - MIR SINE MIR -118 144 12 792 188 0 0 chr1 218694883 218695016 -23969337 - FLAM_C SINE Alu 0 133 1 2070 97 4 18 chr1 218695065 218695343 -23969010 - AluSx SINE Alu -21 291 18 201 343 0 15 chr1 218695496 218695563 -23968790 - MIR SINE MIR -122 86 21 26 64 0 0 chr1 218695665 218695712 -23968641 + AT_rich Low_complexity Low_complexity 1 47 0 1146 53 0 0 chr1 218695766 218695898 -23968455 + AluY SINE Alu 1 132 -179 806 232 130 0 chr1 218696591 218696798 -23967555 + MIR SINE MIR 7 240 -22 248 62 0 0 chr1 218697786 218697818 -23966535 - U2 snRNA snRNA -156 32 1 2463 82 3 0 chr1 218698998 218699303 -23965050 + AluY SINE Alu 1 306 -5 353 311 196 42 chr1 218699373 218699764 -23964589 + L2 LINE L2 1684 2013 -1301 2324 87 3 10 chr1 218699764 218700074 -23964279 + AluSc SINE Alu 1 308 -1 353 311 196 42 chr1 218700074 218700369 -23963984 + L2 LINE L2 2013 2476 -838 744 211 50 135 chr1 218700508 218700826 -23963527 - AluJb SINE Alu -11 291 1 2201 103 7 0 chr1 218701118 218701410 -23962943 + AluSq SINE Alu 1 294 -19 2241 108 0 7 chr1 218701412 218701717 -23962636 + AluSx SINE Alu 1 303 -9 499 297 203 0 chr1 218701820 218702022 -23962331 + MIR SINE MIR 20 262 0 1441 116 0 0 chr1 218702425 218702615 -23961738 - AluSq SINE Alu -123 190 1 620 207 74 0 chr1 218703256 218703377 -23960976 - FLAM_C SINE Alu -3 130 1 292 293 186 32 chr1 218703721 218703909 -23960444 + MIR SINE MIR 23 239 -23 3159 141 50 7 chr1 218703915 218704519 -23959834 + L1MB7 LINE L1 5535 6164 -20 21 82 0 0 chr1 218704601 218704650 -23959703 + AT_rich Low_complexity Low_complexity 1 49 0 2207 95 0 0 chr1 218705492 218705800 -23958553 - AluSx SINE Alu 0 308 1 435 218 98 121 chr1 218705963 218706105 -23958248 - L1MC4 LINE L1 0 8042 7898 2080 85 46 3 chr1 218706105 218706388 -23957965 + AluSg SINE Alu 1 295 -15 435 218 98 121 chr1 218706388 218706652 -23957701 - L1MC4 LINE L1 -144 7898 7532 1203 125 12 0 chr1 218707753 218707921 -23956432 - AluSg/x SINE Alu 0 312 143 2479 91 0 0 chr1 218708408 218708716 -23955637 + AluSq SINE Alu 1 308 -5 882 179 6 30 chr1 218709258 218709426 -23954927 - FRAM SINE Alu -12 164 1 825 179 0 0 chr1 218711961 218712095 -23952258 + AluJo SINE Alu 1 134 -178 282 56 0 0 chr1 218712327 218712363 -23951990 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 1029 170 189 5 chr1 218712363 218712575 -23951778 - AluJb SINE Alu -61 251 1 557 257 129 23 chr1 218714196 218714367 -23949986 - MIR SINE MIR -73 189 1 649 298 60 28 chr1 218714507 218714622 -23949731 + MIR SINE MIR 31 141 -121 2100 97 31 3 chr1 218714622 218714911 -23949442 + AluSg SINE Alu 1 297 -13 649 298 60 28 chr1 218714911 218715010 -23949343 + MIR SINE MIR 141 252 -10 399 297 40 27 chr1 218716084 218716232 -23948121 - MIR SINE MIR -17 245 96 21 0 0 0 chr1 218716495 218716516 -23947837 + AT_rich Low_complexity Low_complexity 1 21 0 2419 64 17 0 chr1 218717039 218717337 -23947016 - AluY SINE Alu -8 303 1 1197 160 5 0 chr1 218717707 218717895 -23946458 + AluJo SINE Alu 117 305 -7 2320 78 14 7 chr1 218718023 218718318 -23946035 - AluSp SINE Alu 0 313 17 1053 127 171 33 chr1 218718339 218718614 -23945739 + L1MB8 LINE L1 5812 6124 -54 813 97 0 0 chr1 218718617 218718730 -23945623 - AluSg/x SINE Alu 0 312 200 281 125 54 0 chr1 218718732 218718788 -23945565 + L1MB8 LINE L1 6115 6173 -5 1678 188 24 3 chr1 218718996 218719284 -23945069 + AluJb SINE Alu 1 294 -18 21 0 0 0 chr1 218720245 218720266 -23944087 + AT_rich Low_complexity Low_complexity 1 21 0 629 223 15 8 chr1 218724514 218724644 -23939709 - FLAM_C SINE Alu -1 132 2 2527 72 0 0 chr1 218724732 218725039 -23939314 - AluSg SINE Alu -3 307 1 808 133 0 0 chr1 218725369 218725489 -23938864 + AluSg/x SINE Alu 181 300 -10 222 336 146 9 chr1 218726543 218726653 -23937700 - MIR SINE MIR -20 242 118 711 126 0 91 chr1 218726810 218726953 -23937400 - FLAM_C SINE Alu -5 138 9 483 281 180 18 chr1 218727144 218727361 -23936992 - MIR SINE MIR -6 256 5 1945 109 33 36 chr1 218727537 218727705 -23936648 - AluSx SINE Alu -9 303 135 2403 89 0 0 chr1 218727705 218728008 -23936345 - AluSg SINE Alu -3 307 5 1945 109 33 36 chr1 218728008 218728143 -23936210 - AluSx SINE Alu -177 135 1 1537 168 46 18 chr1 218728209 218728489 -23935864 - AluJo SINE Alu -24 288 1 242 197 68 61 chr1 218728559 218728691 -23935662 + L1MC5 LINE L1 7704 7836 -125 330 288 88 69 chr1 218729858 218730018 -23934335 - L2 LINE L2 0 3272 3110 399 195 61 0 chr1 218730581 218730663 -23933690 + MIR3 SINE MIR 111 197 -11 1757 140 38 14 chr1 218730766 218731058 -23933295 + AluJo SINE Alu 1 299 -13 1831 260 69 23 chr1 218731385 218732153 -23932200 + L1M4 LINE L1 4279 5081 -1065 2185 99 20 0 chr1 218732191 218732484 -23931869 + AluSx SINE Alu 1 299 -13 183 42 0 0 chr1 218734465 218734489 -23929864 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 248 272 146 63 chr1 218734535 218734741 -23929612 + L2 LINE L2 2940 3162 -110 219 297 27 40 chr1 218734840 218734914 -23929439 + L2 LINE L2 3184 3256 -16 559 178 65 98 chr1 218735121 218735281 -23929072 - MIR SINE MIR -10 252 99 1984 89 89 7 chr1 218735281 218735561 -23928792 + AluSx SINE Alu 1 303 -9 559 178 65 98 chr1 218735561 218735614 -23928739 - MIR SINE MIR -163 99 46 183 80 0 0 chr1 218735949 218735974 -23928379 + (GGGAA)n Simple_repeat Simple_repeat 5 29 0 2343 90 0 0 chr1 218736123 218736423 -23927930 - AluSg SINE Alu -10 300 1 2175 68 41 34 chr1 218737091 218737383 -23926970 + AluY SINE Alu 1 294 -17 1616 214 130 32 chr1 218737386 218738072 -23926281 - L1MEc LINE L1 -4946 1450 698 235 184 0 0 chr1 218739061 218739099 -23925254 + L2 LINE L2 3223 3260 -12 2676 238 25 79 chr1 218739245 218739530 -23924823 - L1ME LINE L1 -4939 1141 842 1633 185 0 25 chr1 218739530 218739816 -23924537 - AluJo SINE Alu -33 279 1 2676 238 25 79 chr1 218739816 218740734 -23923619 - L1ME LINE L1 -5238 842 8 1562 168 143 9 chr1 218740735 218741057 -23923296 - MLT1A1 LTR MaLR 0 365 1 3261 81 9 0 chr1 218741781 218742211 -23922142 - MER57B LTR ERV1 0 434 1 1199 177 4 0 chr1 218742393 218742625 -23921728 - MER63B DNA MER1_type -1 434 202 2080 116 0 7 chr1 218742631 218742956 -23921397 - AluSx SINE Alu 0 323 1 694 220 0 15 chr1 218742971 218743103 -23921250 - FLAM_C SINE Alu -3 130 1 876 211 62 0 chr1 218743157 218743351 -23921002 - MER63B DNA MER1_type -230 206 1 210 208 0 0 chr1 218746058 218746106 -23918247 + (CA)n Simple_repeat Simple_repeat 2 49 0 418 266 112 80 chr1 218746480 218746766 -23917587 - L2 LINE L2 0 3272 2978 679 186 8 0 chr1 218746859 218746977 -23917376 + FLAM_C SINE Alu 5 123 -20 195 263 88 0 chr1 218747695 218747752 -23916601 - L2 LINE L2 -75 3197 3136 1205 142 21 13 chr1 218747927 218748469 -23915884 + L1MA9 LINE L1 5649 6144 -40 247 253 101 13 chr1 218748555 218748634 -23915719 + MIR SINE MIR 129 214 -48 21 57 0 0 chr1 218750189 218750224 -23914129 + AT_rich Low_complexity Low_complexity 1 35 0 291 322 75 37 chr1 218750514 218750728 -23913625 + L2 LINE L2 2642 2863 -451 958 113 0 0 chr1 218750830 218750963 -23913390 + FLAM_C SINE Alu 1 133 0 505 172 0 0 chr1 218751043 218751130 -23913223 - AluJ/FRAM SINE Alu -3 309 223 267 106 0 0 chr1 218751230 218751277 -23913076 + Alu SINE Alu 254 300 0 189 0 0 0 chr1 218751287 218751308 -23913045 + (TA)n Simple_repeat Simple_repeat 2 22 0 186 43 0 0 chr1 218751623 218751646 -23912707 + (TA)n Simple_repeat Simple_repeat 2 24 0 2156 121 3 3 chr1 218751648 218751945 -23912408 - AluSx SINE Alu -15 297 1 223 294 0 0 chr1 218752524 218752575 -23911778 + L2 LINE L2 3217 3267 -5 188 374 101 0 chr1 218752671 218752770 -23911583 + L2 LINE L2 2767 2875 -439 421 252 36 7 chr1 218753028 218753167 -23911186 + Charlie4a DNA MER1_type 18 160 -348 1110 160 80 77 chr1 218753242 218753604 -23910749 + Charlie4a DNA MER1_type 145 507 -1 1244 114 0 0 chr1 218753704 218753905 -23910448 + AluSg/x SINE Alu 115 315 0 2199 90 4 0 chr1 218754527 218754806 -23909547 - AluSp SINE Alu -29 284 5 2125 139 0 0 chr1 218755294 218755595 -23908758 + AluSx SINE Alu 1 301 -11 308 132 0 0 chr1 218755888 218755941 -23908412 + Alu SINE Alu 246 298 -4 1097 178 0 0 chr1 218755965 218756134 -23908219 - AluSg/x SINE Alu -13 297 129 11622 147 25 4 chr1 218756134 218758020 -23906333 + L1M1 LINE L1 143 2069 -5496 2131 132 48 25 chr1 218758021 218758377 -23905976 + THE1B LTR MaLR 1 364 0 10772 85 11 4 chr1 218758377 218759879 -23904474 + THE1B-int LTR MaLR 1 1503 -77 2505 78 3 3 chr1 218759879 218760187 -23904166 + AluSp SINE Alu 2 309 -4 10772 85 11 4 chr1 218760187 218760266 -23904087 + THE1B-int LTR MaLR 1503 1580 0 2136 122 57 28 chr1 218760266 218760620 -23903733 + THE1B LTR MaLR 1 364 0 8153 90 39 16 chr1 218760620 218761870 -23902483 + L1M1 LINE L1 2066 3344 -4221 1170 152 5 0 chr1 218761990 218762187 -23902166 + L1PBa LINE L1 3 200 -6663 1017 131 5 113 chr1 218762179 218762400 -23901953 + L1PBa LINE L1 625 821 -6042 * 477 101 0 0 chr1 218762397 218762466 -23901887 + L1PBa LINE L1 2838 2906 -3957 * 1877 109 17 0 chr1 218762464 218762757 -23901596 - L1 LINE L1 -1441 6124 5827 335 118 20 0 chr1 218762759 218762810 -23901543 - MER75 DNA T2_type 0 504 453 2170 95 10 0 chr1 218762970 218763264 -23901089 - AluY SINE Alu -14 297 1 2379 52 3 56 chr1 218763269 218763593 -23900760 - AluY SINE Alu -2 309 3 4316 185 69 15 chr1 218763606 218763960 -23900393 - L1 LINE L1 -2866 4699 4366 2286 110 3 0 chr1 218763960 218764259 -23900094 - AluSp SINE Alu -13 300 1 4316 185 69 15 chr1 218764259 218764919 -23899434 - L1 LINE L1 -3199 4366 3600 204 40 0 0 chr1 218764919 218764944 -23899409 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4316 185 69 15 chr1 218764944 218765230 -23899123 - L1 LINE L1 -3965 3600 3331 3595 85 2 10 chr1 218765546 218766042 -23898311 - L1PB1 LINE L1 0 6151 5660 4283 95 16 28 chr1 218766056 218766452 -23897901 + L1MA3 LINE L1 5436 5822 -483 2250 99 0 10 chr1 218766452 218766756 -23897597 + AluSg1 SINE Alu 1 301 -8 4283 95 16 28 chr1 218766756 218767002 -23897351 + L1MA3 LINE L1 5822 6070 -235 1389 131 93 17 chr1 218767126 218767386 -23896967 + AluSx SINE Alu 28 305 0 1415 140 0 0 chr1 218767386 218767614 -23896739 + L1MA2 LINE L1 6071 6298 -6 625 192 108 0 chr1 218767671 218767791 -23896562 + AluJo SINE Alu 1 133 -169 1763 149 20 26 chr1 218767809 218768111 -23896242 + AluJo SINE Alu 1 300 -12 2406 98 0 0 chr1 218768111 218768417 -23895936 + AluY SINE Alu 1 306 -5 835 241 62 46 chr1 218768420 218768727 -23895626 + L1MEc LINE L1 1573 1884 -4512 243 125 0 0 chr1 218768704 218768744 -23895609 + L1M4 LINE L1 3801 3840 -2375 * 951 201 6 6 chr1 218768749 218768928 -23895425 + AluJo SINE Alu 129 307 -5 572 221 0 0 chr1 218768934 218769047 -23895306 + L1M4 LINE L1 3847 3959 -2256 1814 181 0 3 chr1 218769047 218769345 -23895008 + AluJb SINE Alu 1 297 -15 353 273 147 20 chr1 218770031 218770229 -23894124 + MLT1J LTR MaLR 287 509 -2 1561 172 10 49 chr1 218770705 218771013 -23893340 - AluJb SINE Alu -14 298 3 773 189 18 18 chr1 218771040 218771058 -23893295 - L1MA10 LINE L1 -1 6333 6316 2023 211 66 28 chr1 218771058 218771588 -23892765 - L1ME1 LINE L1 -10 6156 5607 836 190 0 73 chr1 218771588 218771767 -23892586 - FRAM SINE Alu 0 166 1 1662 81 40 5 chr1 218772373 218772595 -23891758 + MER30 DNA MER1_type 1 230 0 258 288 272 5 chr1 218772767 218772958 -23891395 - MIR SINE MIR -9 253 12 762 125 8 25 chr1 218774429 218774549 -23889804 - FRAM SINE Alu -21 155 38 1862 142 0 7 chr1 218774561 218774877 -23889476 - AluJb SINE Alu 0 319 6 1862 101 66 10 chr1 218775207 218775495 -23888858 - Tigger7 DNA MER2_type -14 2473 2170 * 4976 143 17 35 chr1 218775493 218775722 -23888631 - Tigger7 DNA MER2_type -1670 817 585 2085 134 3 3 chr1 218775722 218776027 -23888326 - AluSx SINE Alu -1 311 7 4976 143 17 35 chr1 218776027 218776629 -23887724 - Tigger7 DNA MER2_type -1902 585 1 302 301 80 35 chr1 218776630 218776743 -23887610 - L2 LINE L2 -19 3253 3136 453 315 239 15 chr1 218776818 218777224 -23887129 - L2 LINE L2 0 3313 2817 369 96 0 0 chr1 218777421 218777473 -23886880 + L1ME LINE L1 5398 5449 -721 * 457 202 69 46 chr1 218777471 218777614 -23886739 + L1ME3A LINE L1 6029 6334 0 2387 89 0 0 chr1 218777625 218777918 -23886435 + AluSg SINE Alu 1 293 -17 1992 114 69 0 chr1 218777920 218778210 -23886143 + AluSg SINE Alu 1 310 0 687 232 54 39 chr1 218778210 218778469 -23885884 + L1MC5 LINE L1 7530 7792 -169 249 140 0 0 chr1 218778855 218778912 -23885441 + (TA)n Simple_repeat Simple_repeat 1 57 0 564 196 92 26 chr1 218779792 218779945 -23884408 + MIR SINE MIR 62 224 -38 2149 77 12 0 chr1 218780185 218780444 -23883909 - AluSc SINE Alu -47 262 1 2177 176 20 119 chr1 218780444 218780663 -23883690 - L1ME LINE L1 -564 5671 5432 2151 106 10 3 chr1 218780663 218780955 -23883398 - AluSp SINE Alu -19 294 1 2177 176 20 119 chr1 218780955 218781027 -23883326 - L1ME LINE L1 -803 5432 5354 2557 80 0 0 chr1 218781027 218781339 -23883014 - AluSx SINE Alu 0 312 1 2177 176 20 119 chr1 218781339 218781555 -23882798 - L1ME LINE L1 -881 5354 5118 814 160 0 0 chr1 218781555 218781680 -23882673 - FLAM_A SINE Alu -8 125 1 2177 176 20 119 chr1 218781680 218782018 -23882335 - L1ME LINE L1 -1117 5118 4776 1570 210 7 20 chr1 218782021 218782344 -23882009 - AluJo SINE Alu 0 312 1 2369 91 3 0 chr1 218782362 218782659 -23881694 - AluSp SINE Alu -15 298 1 810 211 31 44 chr1 218782669 218782852 -23881501 - L1ME LINE L1 -4352 2044 1862 772 225 40 54 chr1 218782852 218782996 -23881357 - L1MD2 LINE L1 0 6359 6215 2313 112 0 0 chr1 218782996 218783308 -23881045 + AluSq SINE Alu 1 312 -1 772 225 40 54 chr1 218783308 218783385 -23880968 - L1MD2 LINE L1 -144 6215 1751 661 191 46 8 chr1 218783485 218783616 -23880737 - AluJo SINE Alu -175 137 2 1990 153 0 7 chr1 218783647 218783947 -23880406 - AluJb SINE Alu -14 298 1 1130 252 88 67 chr1 218783951 218784148 -23880205 - HAL1 LINE L1 -810 1697 1505 2162 65 0 8 chr1 218784148 218784408 -23879945 - AluY SINE Alu -17 294 37 1130 252 88 67 chr1 218784408 218784444 -23879909 - HAL1 LINE L1 -1002 1505 1471 222 37 0 0 chr1 218784444 218784471 -23879882 + (TC)n Simple_repeat Simple_repeat 2 28 0 1130 252 88 67 chr1 218784471 218784550 -23879803 - HAL1 LINE L1 -1036 1471 1395 2217 86 45 14 chr1 218784550 218784842 -23879511 - AluY SINE Alu -10 301 1 1130 252 88 67 chr1 218784842 218785095 -23879258 - HAL1 LINE L1 -1112 1395 1113 2068 148 3 0 chr1 218785095 218785406 -23878947 - AluSq SINE Alu -1 312 1 1130 252 88 67 chr1 218785406 218785476 -23878877 - HAL1 LINE L1 -1394 1113 1046 983 217 0 0 chr1 218785522 218785702 -23878651 - AluJo SINE Alu -12 300 121 239 219 67 38 chr1 218786161 218786266 -23878087 + L2 LINE L2 2951 3058 -214 266 275 77 11 chr1 218786649 218786740 -23877613 + L3 LINE CR1 1474 1570 -7 871 266 25 12 chr1 218786808 218787052 -23877301 - MER112 DNA MER1_type -6 254 8 2268 79 7 23 chr1 218787152 218787455 -23876898 - AluSq SINE Alu -15 298 1 844 156 0 22 chr1 218787455 218787590 -23876763 - AluJo SINE Alu -170 132 1 284 302 20 54 chr1 218787975 218788124 -23876229 + MIR SINE MIR 79 222 -40 25 0 0 0 chr1 218788131 218788156 -23876197 + AT_rich Low_complexity Low_complexity 1 25 0 2245 84 0 30 chr1 218788854 218789017 -23875336 - AluSc SINE Alu -21 288 136 2586 59 0 0 chr1 218789017 218789320 -23875033 - AluY SINE Alu -8 303 1 2245 84 0 30 chr1 218789320 218789453 -23874900 - AluSc SINE Alu -173 136 1 1609 178 25 7 chr1 218789471 218789757 -23874596 - AluJo SINE Alu -21 291 1 356 241 19 9 chr1 218789772 218789880 -23874473 + L1MC4a LINE L1 5813 5921 -1887 2660 44 0 0 chr1 218790051 218790348 -23874005 - AluY SINE Alu -14 297 1 1892 130 39 11 chr1 218791246 218791530 -23872823 - AluJb SINE Alu -7 305 14 919 134 8 0 chr1 218791701 218791835 -23872518 + AluSg/x SINE Alu 172 306 -4 2461 250 45 41 chr1 218791842 218792787 -23871566 - L1M4 LINE L1 -841 5305 4357 3102 150 27 40 chr1 218793274 218793828 -23870525 - MLT2B3 LTR ERVL -7 547 1 888 226 11 91 chr1 218793991 218794265 -23870088 - MIR SINE MIR 0 262 11 1140 161 0 0 chr1 218794318 218794492 -23869861 + AluJb SINE Alu 130 303 -9 2417 82 7 3 chr1 218795193 218795498 -23868855 - AluSq SINE Alu -7 306 1 229 330 52 37 chr1 218795498 218795689 -23868664 + L2 LINE L2 2445 2638 -676 934 136 19 26 chr1 218795737 218795891 -23868462 - FRAM SINE Alu -23 153 1 246 305 66 84 chr1 218795893 218796119 -23868234 + L2 LINE L2 2687 2908 -406 404 145 0 13 chr1 218796195 218796271 -23868082 + (CA)n Simple_repeat Simple_repeat 2 76 0 284 75 50 0 chr1 218796285 218796325 -23868028 - MER57A LTR ERV1 -67 336 295 563 191 70 201 chr1 218796326 218796770 -23867583 - L2 LINE L2 -10 3303 2918 244 331 120 7 chr1 218797856 218797998 -23866355 - MIR3 SINE MIR -18 190 33 507 239 73 131 chr1 218798070 218798384 -23865969 + Charlie8 DNA MER1_type 72 367 -2050 1082 82 0 0 chr1 218798387 218798521 -23865832 - AluSg/x SINE Alu -15 297 164 309 65 0 0 chr1 218798659 218798705 -23865648 + Alu SINE Alu 257 302 0 2260 96 3 3 chr1 218798742 218799033 -23865320 + AluSx SINE Alu 1 291 -21 222 128 64 0 chr1 218799034 218799081 -23865272 + (TA)n Simple_repeat Simple_repeat 1 50 0 1584 161 0 55 chr1 218799081 218799391 -23864962 - AluJb SINE Alu -19 293 1 840 176 0 45 chr1 218799530 218799706 -23864647 - FAM SINE Alu -8 41 1 2465 104 25 3 chr1 218800854 218801211 -23863142 - MER47A DNA MER2_type -1 365 1 1936 161 0 10 chr1 218802304 218802614 -23861739 - AluJb SINE Alu -5 307 1 387 0 0 0 chr1 218803179 218803222 -23861131 + (TG)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr1 218803415 218803437 -23860916 + (T)n Simple_repeat Simple_repeat 1 22 0 623 282 59 10 chr1 218804692 218804894 -23859459 + MIR SINE MIR 34 245 -17 489 110 0 0 chr1 218804985 218805058 -23859295 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 1377 148 43 0 chr1 218805106 218805315 -23859038 + AluJb SINE Alu 87 304 -8 549 288 78 36 chr1 218805477 218805696 -23858657 - MIR SINE MIR -6 256 29 219 232 0 0 chr1 218806244 218806300 -23858053 + (CA)n Simple_repeat Simple_repeat 2 57 0 1978 139 14 7 chr1 218806866 218807160 -23857193 - AluJb SINE Alu -16 296 1 992 191 38 25 chr1 218807263 218807499 -23856854 + MIR SINE MIR 14 252 -10 2029 133 0 4 chr1 218809036 218809315 -23855038 + AluSx SINE Alu 1 278 -34 192 254 0 0 chr1 218809315 218809374 -23854979 + GA-rich Low_complexity Low_complexity 3 61 0 212 272 37 12 chr1 218809595 218809676 -23854677 + L2 LINE L2 2673 2755 -559 948 142 0 43 chr1 218810460 218810622 -23853731 + FRAM SINE Alu 22 176 0 257 326 11 11 chr1 218811213 218811308 -23853045 + MIR SINE MIR 48 142 -66 1659 197 14 0 chr1 218811570 218811860 -23852493 + AluJo SINE Alu 1 294 -18 2535 61 3 0 chr1 218811889 218812185 -23852168 + AluSp SINE Alu 1 297 -16 1704 181 14 0 chr1 218812201 218812494 -23851859 + AluJo SINE Alu 5 301 -11 203 293 198 6 chr1 218812866 218813023 -23851330 + MIR SINE MIR 23 209 -53 1623 151 46 28 chr1 218813162 218813336 -23851017 - AluJb SINE Alu -22 290 108 207 69 0 0 chr1 218813336 218813365 -23850988 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 1623 151 46 28 chr1 218813365 218813475 -23850878 - AluJb SINE Alu -204 108 1 180 0 0 0 chr1 218814052 218814072 -23850281 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 306 167 158 44 chr1 218814382 218814496 -23849857 + MER113 DNA MER1_type? 44 170 -351 1937 157 7 3 chr1 218814544 218814849 -23849504 + AluJb SINE Alu 1 306 -6 204 259 106 12 chr1 218814896 218814981 -23849372 - MIR SINE MIR -58 150 58 507 254 45 28 chr1 218815199 218815376 -23848977 - Charlie7 DNA MER1_type -18 2594 2415 * 1564 245 111 25 chr1 218815366 218815979 -23848374 - Charlie7 DNA MER1_type -1889 723 58 2452 85 3 0 chr1 218816032 218816337 -23848016 + AluSc SINE Alu 3 308 -1 250 303 66 0 chr1 218816441 218816517 -23847836 + L2 LINE L2 3146 3226 -46 2183 103 26 0 chr1 218817483 218817794 -23846559 - L1PB1 LINE L1 -5 6146 5828 1596 139 48 30 chr1 218818318 218818613 -23845740 - AluJo SINE Alu 0 312 13 217 365 48 8 chr1 218818727 218818853 -23845500 - MIR SINE MIR -62 146 16 666 263 40 36 chr1 218818865 218819116 -23845237 + MIR SINE MIR 11 262 0 866 121 0 0 chr1 218819125 218819249 -23845104 - THE1B LTR MaLR -1 363 240 * 1235 133 180 43 chr1 218819246 218819502 -23844851 + MLT2B1 LTR ERVL 180 470 -50 313 219 38 60 chr1 218819533 218819716 -23844637 + (TA)n Simple_repeat Simple_repeat 2 180 0 278 154 0 92 chr1 218819739 218819804 -23844549 + MLT2B1 LTR ERVL 461 519 -1 * 1117 160 15 5 chr1 218819804 218819994 -23844359 - MER3 DNA MER1_type -16 193 2 228 91 0 0 chr1 218820201 218820234 -23844119 + LTR24B LTR ERV1 12 44 -532 1369 121 5 5 chr1 218820280 218820487 -23843866 + LTR24B LTR ERV1 363 569 -7 374 161 0 81 chr1 218820514 218820601 -23843752 - MER116 DNA Mariner 0 80 1 336 228 156 54 chr1 218820835 218821059 -23843294 - MLT1J LTR MaLR -21 490 244 554 270 63 100 chr1 218821512 218821831 -23842522 + MLT1K LTR MaLR 216 522 -66 2453 261 55 37 chr1 218822458 218822947 -23841406 + L1ME3A LINE L1 5191 5670 -500 1801 170 0 17 chr1 218822947 218823247 -23841106 + AluJo SINE Alu 1 295 -17 2453 261 55 37 chr1 218823247 218823720 -23840633 + L1ME3A LINE L1 5670 6170 0 828 307 73 34 chr1 218824816 218825200 -23839153 + MLT1K LTR MaLR 180 578 -10 1378 193 43 30 chr1 218826219 218826520 -23837833 + MLT1A1 LTR MaLR 3 307 -58 22 0 0 0 chr1 218826544 218826566 -23837787 + AT_rich Low_complexity Low_complexity 1 22 0 554 48 0 72 chr1 218826622 218826683 -23837670 + MLT1A1 LTR MaLR 289 344 -21 2130 149 83 5 chr1 218826683 218827080 -23837273 - MSTA LTR MaLR 0 428 1 554 48 0 72 chr1 218827080 218827101 -23837252 + MLT1A1 LTR MaLR 344 365 0 230 231 112 59 chr1 218827586 218827713 -23836640 + L1ME4a LINE L1 5787 5927 -194 616 136 85 0 chr1 218827713 218827831 -23836522 + L1MA5A LINE L1 6165 6292 -5 230 231 112 59 chr1 218827831 218827872 -23836481 + L1ME4a LINE L1 5927 5964 -157 1789 182 0 7 chr1 218827975 218828277 -23836076 + AluJo SINE Alu 1 300 -12 189 74 0 0 chr1 218828303 218828330 -23836023 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1308 221 18 11 chr1 218828334 218828614 -23835739 - AluJo SINE Alu -30 282 1 258 255 128 10 chr1 218828623 218828725 -23835628 + L1ME4a LINE L1 5995 6108 -13 297 252 154 8 chr1 218830456 218830579 -23833774 - MIR SINE MIR -72 190 50 2311 106 0 0 chr1 218830584 218830886 -23833467 - AluSc SINE Alu 0 309 8 486 273 9 0 chr1 218831171 218831281 -23833072 - L2 LINE L2 -1 3271 3161 287 331 121 21 chr1 218831442 218831723 -23832630 - L2 LINE L2 -337 2977 2669 359 243 63 110 chr1 218831893 218832193 -23832160 - L2 LINE L2 0 3313 3028 858 214 140 48 chr1 218832232 218832610 -23831743 - L2 LINE L2 -399 2915 2503 315 253 77 0 chr1 218832845 218832936 -23831417 - MIR SINE MIR -64 198 101 836 171 146 40 chr1 218833202 218833401 -23830952 + AluJo SINE Alu 81 300 -12 1678 203 44 69 chr1 218833443 218833878 -23830475 - MLT1C LTR MaLR 0 467 44 2065 148 0 0 chr1 218833878 218834183 -23830170 + AluJb SINE Alu 1 305 -7 1678 203 44 69 chr1 218834183 218834226 -23830127 - MLT1C LTR MaLR -423 44 1 1352 209 75 55 chr1 218835014 218835468 -23828885 + MLT1C LTR MaLR 1 463 -4 1109 255 68 30 chr1 218835647 218836075 -23828278 - LTR33 LTR ERVL -39 482 39 2497 82 3 0 chr1 218836280 218836586 -23827767 - AluSp SINE Alu -6 307 1 220 273 0 0 chr1 218836909 218836964 -23827389 + MIR SINE MIR 148 202 -60 4331 87 6 88 chr1 218836983 218837707 -23826646 + MER4A LTR ERV1 1 664 0 2200 107 14 7 chr1 218837953 218838244 -23826109 - AluSx SINE Alu -19 293 1 210 250 0 0 chr1 218838611 218838659 -23825694 + CT-rich Low_complexity Low_complexity 1 48 0 1599 157 16 49 chr1 218838659 218838964 -23825389 - AluJo SINE Alu -17 295 1 282 250 115 45 chr1 218839823 218840023 -23824330 + L2 LINE L2 3100 3313 0 392 254 34 8 chr1 218842553 218842671 -23821682 - LTR67 LTR ERVL -10 547 427 229 329 12 12 chr1 218842753 218842838 -23821515 + L2 LINE L2 2646 2730 -584 1171 256 55 118 chr1 218842838 218843603 -23820750 + MER21B LTR ERV1 3 719 -144 526 336 46 4 chr1 218843609 218843847 -23820506 + L2 LINE L2 2730 2977 -337 442 281 87 5 chr1 218844468 218844664 -23819689 - LTR33A LTR ERVL -13 510 299 236 368 0 0 chr1 218844742 218844818 -23819535 + (CTA)n Simple_repeat Simple_repeat 1 76 0 325 216 171 0 chr1 218844834 218844922 -23819431 - LTR33A LTR ERVL -361 162 60 256 306 137 8 chr1 218845145 218845269 -23819084 + L2 LINE L2 3132 3271 -1 1998 123 84 8 chr1 218845810 218846169 -23818184 - MLT1B LTR MaLR -4 386 1 1360 184 267 3 chr1 218847208 218847942 -23816411 + SATR1 Satellite Satellite 1 927 -1 1361 226 223 23 chr1 218847978 218849059 -23815294 + SATR1 Satellite Satellite 1 1297 -96 274 179 231 32 chr1 218849369 218849525 -23814828 + SATR1 Satellite Satellite 188 374 -96 2442 21 3 3 chr1 218850693 218850980 -23813373 - L1PA4 LINE L1 0 6155 5869 3915 41 8 8 chr1 218850980 218851465 -23812888 + L1PA4 LINE L1 5412 5896 -259 1832 172 193 40 chr1 218851650 218852921 -23811432 - SATR1 Satellite Satellite -1 1465 1 210 37 0 0 chr1 218853384 218853411 -23810942 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 786 213 76 22 chr1 218853923 218853983 -23810370 - MIR SINE MIR -3 259 204 1754 117 20 149 chr1 218853983 218854159 -23810194 - MER2 DNA MER2_type 0 344 246 1708 183 10 19 chr1 218854159 218854471 -23809882 - AluJb SINE Alu -3 309 1 1754 117 20 149 chr1 218854471 218854689 -23809664 - MER2 DNA MER2_type -98 246 1 786 213 76 22 chr1 218854689 218854853 -23809500 - MIR SINE MIR -58 204 23 461 230 72 0 chr1 218855845 218855978 -23808375 + MIR SINE MIR 25 169 -64 2281 139 9 9 chr1 218856084 218856421 -23807932 - MER1B DNA MER1_type 0 337 1 1844 157 3 23 chr1 218856632 218856932 -23807421 - AluJo SINE Alu -18 294 1 2042 126 32 0 chr1 218857056 218857341 -23807012 - AluSx SINE Alu -18 294 1 425 287 47 13 chr1 218857449 218857599 -23806754 - MIR SINE MIR -58 204 50 1090 239 57 62 chr1 218857599 218858005 -23806348 - MLT1H LTR MaLR -39 510 107 787 152 44 38 chr1 218858033 218858191 -23806162 + MER97b DNA MER1_type? 21 179 -874 376 238 0 40 chr1 218858241 218858342 -23806011 - MLT1H LTR MaLR -482 113 17 1560 173 0 29 chr1 218858974 218859246 -23805107 - AluJo SINE Alu -37 275 12 280 279 122 41 chr1 218859293 218859465 -23804888 - L1ME3A LINE L1 -16 6154 5969 986 228 142 63 chr1 218859542 218859986 -23804367 - L1ME3A LINE L1 -219 5951 5473 3670 108 43 0 chr1 218859986 218860493 -23803860 + MER1A DNA MER1_type 1 529 0 634 279 66 25 chr1 218860493 218861055 -23803298 - L1ME3A LINE L1 -685 5479 4883 840 334 51 3 chr1 218861064 218861414 -23802939 + LTR16B LTR ERVL 98 464 0 1721 173 39 24 chr1 218862112 218862448 -23801905 + MSTB LTR MaLR 1 341 -85 239 176 235 0 chr1 218862423 218862474 -23801879 - MER1A DNA MER1_type -464 63 1 * 591 256 88 60 chr1 218862474 218862759 -23801594 + L1ME LINE L1 5473 5765 -405 861 82 0 0 chr1 218862761 218862871 -23801482 + MSTB1 LTR MaLR 323 432 0 342 0 0 0 chr1 218863045 218863083 -23801270 + (TG)n Simple_repeat Simple_repeat 2 39 0 7113 62 0 0 chr1 218865957 218867043 -23797310 - L1PA7 LINE L1 0 6154 5064 343 48 306 16 chr1 218867126 218867188 -23797165 - MADE1 DNA Mariner 0 80 1 2239 90 0 0 chr1 218867594 218867900 -23796453 + AluSc SINE Alu 1 306 0 1851 176 10 0 chr1 218868059 218868354 -23795999 + AluJo SINE Alu 1 298 -14 2350 86 17 0 chr1 218868460 218868752 -23795601 - AluSp SINE Alu -16 297 1 1228 279 63 68 chr1 218868814 218869369 -23794984 - L1ME3A LINE L1 -219 5951 5395 2220 111 3 0 chr1 218869369 218869667 -23794686 - AluSx SINE Alu -12 300 2 1228 279 63 68 chr1 218869667 218869756 -23794597 - L1ME3A LINE L1 -775 5395 5307 2412 116 17 0 chr1 218869756 218870102 -23794251 - L1PA16 LINE L1 -9 6157 5806 1228 279 63 68 chr1 218870102 218870772 -23793581 - L1ME3A LINE L1 -863 5307 4642 3957 149 4 38 chr1 218870801 218871027 -23793326 + MER54A LTR ERVL 15 247 -654 2471 82 0 0 chr1 218871027 218871330 -23793023 + AluSx SINE Alu 1 303 -9 3957 149 4 38 chr1 218871330 218871818 -23792535 + MER54A LTR ERVL 247 897 -4 2188 138 0 0 chr1 218871818 218872122 -23792231 + AluSx SINE Alu 1 304 -8 1018 177 49 58 chr1 218872197 218872440 -23791913 - L1 LINE L1 -1494 4652 4412 313 161 0 0 chr1 218872443 218872499 -23791854 - Alu SINE Alu -2 300 245 415 250 8 0 chr1 218872499 218872627 -23791726 + L1M4 LINE L1 3371 3499 -2647 * 594 265 0 48 chr1 218872621 218872893 -23791460 - L1 LINE L1 -2766 3380 3122 703 157 9 0 chr1 218873526 218873634 -23790719 - FLAM_C SINE Alu -21 122 14 183 329 0 27 chr1 218875413 218875486 -23788867 + MIR SINE MIR 53 123 -139 694 195 125 66 chr1 218875900 218876156 -23788197 - HAL1 LINE L1 -13 2494 2224 666 178 7 15 chr1 218876160 218876295 -23788058 - HAL1 LINE L1 -338 2169 2036 4645 144 18 17 chr1 218876361 218877596 -23786757 + L1PB2 LINE L1 4699 5935 -216 1097 108 6 0 chr1 218877600 218877758 -23786595 + L1PB2 LINE L1 5991 6149 -2 2261 230 107 62 chr1 218877848 218879139 -23785214 - HAL1 LINE L1 -486 2021 485 2168 164 66 10 chr1 218879139 218879548 -23784805 + MSTB1 LTR MaLR 1 432 0 2261 230 107 62 chr1 218879548 218879896 -23784457 - HAL1 LINE L1 -2022 485 154 1482 176 113 84 chr1 218879904 218880151 -23784202 - MER4C LTR ERV1 0 465 343 1845 97 78 4 chr1 218880151 218880408 -23783945 + AluSc SINE Alu 21 296 -13 1482 176 113 84 chr1 218880408 218880762 -23783591 - MER4C LTR ERV1 -122 343 1 239 258 106 23 chr1 218880765 218880897 -23783456 - HAL1 LINE L1 -2361 146 4 329 279 26 42 chr1 218883188 218883339 -23781014 - MER5A DNA MER1_type -1 188 29 203 311 66 66 chr1 218884693 218884876 -23779477 + L2 LINE L2 2867 3049 -223 264 264 103 0 chr1 218884884 218884971 -23779382 - L2 LINE L2 -3 3269 3174 1872 158 6 37 chr1 218885052 218885374 -23778979 - AluJo SINE Alu 0 312 1 2281 116 73 14 chr1 218885782 218886126 -23778227 - THE1B LTR MaLR 0 364 1 1711 171 88 46 chr1 218886214 218886648 -23777705 + MLT1C LTR MaLR 7 458 -9 1905 146 7 19 chr1 218887242 218887551 -23776802 + AluJo SINE Alu 1 305 -7 207 200 36 18 chr1 218887807 218887862 -23776491 + L2 LINE L2 3257 3312 -1 2117 126 0 0 chr1 218889469 218889755 -23774598 - AluSg SINE Alu -19 291 6 244 258 16 0 chr1 218889773 218889835 -23774518 + L2 LINE L2 3210 3272 0 1785 168 131 6 chr1 218890005 218890356 -23773997 - MSTD LTR MaLR 0 396 2 400 255 0 20 chr1 218890908 218891010 -23773343 + MIR SINE MIR 22 121 -141 440 282 136 23 chr1 218891326 218891546 -23772807 + MIR SINE MIR 16 260 -2 452 117 13 0 chr1 218891687 218891764 -23772589 + (TG)n Simple_repeat Simple_repeat 1 78 0 1139 139 6 17 chr1 218892726 218892906 -23771447 - AluJb SINE Alu 0 312 135 269 197 2 0 chr1 218893019 218893077 -23771276 - MIR SINE MIR -86 122 64 784 116 41 14 chr1 218893133 218893279 -23771074 + L1MA5A LINE L1 6144 6293 -4 1210 126 55 0 chr1 218893563 218893762 -23770591 + L1MB3 LINE L1 5974 6183 0 1091 240 37 34 chr1 218894072 218894479 -23769874 - MER74B LTR ERVL -74 548 70 9989 118 45 2 chr1 218894482 218894662 -23769691 + Tigger1 DNA MER2_type 2 173 -2245 1571 193 7 0 chr1 218894662 218894931 -23769422 - AluJo SINE Alu -41 271 1 9989 118 45 2 chr1 218894931 218896227 -23768126 + Tigger1 DNA MER2_type 173 1542 -876 311 177 39 0 chr1 218896232 218896297 -23768056 + MER21A LTR ERV1 16 83 -780 2921 164 28 157 chr1 218896392 218896456 -23767897 + MER21A LTR ERV1 72 143 -788 2143 109 3 0 chr1 218896456 218896791 -23767562 + AluSq SINE Alu 1 336 0 2921 164 28 157 chr1 218896791 218897606 -23766747 + MER21A LTR ERV1 143 839 -92 6154 105 21 2 chr1 218897657 218898521 -23765832 + Tigger1 DNA MER2_type 1539 2418 0 386 248 97 73 chr1 218898720 218898926 -23765427 - MLT1G1 LTR MaLR -42 553 303 32 81 0 0 chr1 218899095 218899169 -23765184 + AT_rich Low_complexity Low_complexity 1 74 0 2346 93 0 7 chr1 218899776 218900077 -23764276 - AluSp SINE Alu -14 299 1 1032 115 0 52 chr1 218900087 218900261 -23764092 - FAM SINE Alu -10 165 1 836 233 42 54 chr1 218900278 218900518 -23763835 + MLT1B LTR MaLR 3 239 -151 4326 129 37 14 chr1 218900526 218901221 -23763132 - MER50 LTR ERV1 -23 711 1 670 233 0 7 chr1 218901223 218901369 -23762984 + MLT1B LTR MaLR 246 390 0 3789 112 9 16 chr1 218902124 218902488 -23761865 - MER34B LTR ERV1 -5 560 200 2918 94 26 36 chr1 218902488 218902955 -23761398 - MER4C LTR ERV1 -3 462 1 3789 112 9 16 chr1 218902955 218903154 -23761199 - MER34B LTR ERV1 -365 200 1 22 35 0 0 chr1 218903263 218903292 -23761061 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 218903761 218903791 -23760562 + AT_rich Low_complexity Low_complexity 1 30 0 3063 177 42 29 chr1 218904267 218904893 -23759460 - LTR27 LTR ERV1 0 636 3 3615 121 84 50 chr1 218904893 218905527 -23758826 + LTR8A LTR ERV1 3 665 -62 2410 213 105 61 chr1 218905527 218906316 -23758037 - LTR1B LTR ERV1 0 826 3 3615 121 84 50 chr1 218906316 218906382 -23757971 + LTR8A LTR ERV1 665 727 0 1462 160 50 98 chr1 218906808 218907503 -23756850 - MER4A LTR ERV1 -8 691 1 1627 182 13 23 chr1 218907571 218907878 -23756475 - MER50 LTR ERV1 0 734 431 2101 171 75 32 chr1 218907878 218908318 -23756035 - LTR2B LTR ERV1 0 490 32 2569 122 49 16 chr1 218908325 218908752 -23755601 - MER50 LTR ERV1 -293 441 1 2319 138 17 3 chr1 218909505 218909866 -23754487 + MER47A DNA MER2_type 1 366 0 1914 129 59 48 chr1 218909866 218910237 -23754116 + THE1C LTR MaLR 1 375 0 304 188 24 59 chr1 218910645 218910730 -23753623 + MLT1J LTR MaLR 96 177 -334 273 350 10 0 chr1 218910791 218910888 -23753465 + MLT1J LTR MaLR 313 410 -101 725 279 11 30 chr1 218910930 218911199 -23753154 - MLT1J LTR MaLR -1 510 247 247 305 50 43 chr1 218911701 218911842 -23752511 + L1ME LINE L1 51 192 -5927 460 366 50 39 chr1 218912151 218912512 -23751841 + L1ME LINE L1 520 884 -5235 1854 158 3 25 chr1 218912570 218912886 -23751467 - AluJb SINE Alu -3 309 1 864 204 17 33 chr1 218912966 218913092 -23751261 + MER45A DNA AcHobo 1 125 -1456 2388 148 53 15 chr1 218913092 218913464 -23750889 + MSTA LTR MaLR 1 392 -36 2000 166 0 3 chr1 218913464 218913765 -23750588 - AluJb SINE Alu -12 300 1 2388 148 53 15 chr1 218913765 218913804 -23750549 + MSTA LTR MaLR 392 428 0 864 204 17 33 chr1 218913804 218913858 -23750495 + MER45A DNA AcHobo 125 178 0 1325 158 147 15 chr1 218913977 218914242 -23750111 + AluJo SINE Alu 1 300 -2 2261 63 26 0 chr1 218914252 218914522 -23749831 + AluSc SINE Alu 1 277 -32 402 21 0 0 chr1 218914522 218914569 -23749784 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 258 230 71 79 chr1 218914605 218914731 -23749622 + MIR SINE MIR 16 140 -68 346 281 151 0 chr1 218915033 218915179 -23749174 - MIR SINE MIR 0 262 95 234 91 0 0 chr1 218915913 218915946 -23748407 + (CGG)n Simple_repeat Simple_repeat 2 34 0 257 344 32 0 chr1 218918204 218918297 -23746056 + MIR3 SINE MIR 109 204 -4 339 260 27 96 chr1 218919851 218919997 -23744356 - MIR SINE MIR -65 143 8 234 140 20 0 chr1 218920174 218920224 -23744129 - L1ME4a LINE L1 -6 6115 6065 982 124 0 0 chr1 218920303 218920432 -23743921 + FLAM_C SINE Alu 1 129 -4 463 259 37 19 chr1 218921233 218921341 -23743012 + L2 LINE L2 3200 3309 -4 2690 107 0 11 chr1 218921382 218921748 -23742605 + THE1B LTR MaLR 1 362 -2 226 328 156 41 chr1 218923090 218923404 -23740949 + L2 LINE L2 1283 1632 -1682 375 277 240 33 chr1 218924463 218924734 -23739619 + L2 LINE L2 2944 3270 -2 2320 74 0 24 chr1 218924855 218925153 -23739200 + AluY SINE Alu 3 293 -18 2426 81 3 0 chr1 218926811 218927109 -23737244 - AluSg SINE Alu -11 299 1 2167 142 19 8 chr1 218927854 218928228 -23736125 - L1MB3 LINE L1 -9 6174 5797 1499 111 12 32 chr1 218928228 218928480 -23735873 + MER4B LTR ERV1 1 247 -363 * 1643 91 3 117 chr1 218928478 218928589 -23735764 + MER4E LTR ERV1 494 616 -150 2267 92 0 33 chr1 218928589 218928892 -23735461 - AluSg SINE Alu -17 293 1 1643 91 3 117 chr1 218928892 218929088 -23735265 + MER4E LTR ERV1 616 766 0 910 195 44 15 chr1 218929089 218929294 -23735059 - L1MB3 LINE L1 -384 5799 5589 1923 108 0 15 chr1 218930490 218930769 -23733584 + AluSg SINE Alu 27 301 0 267 284 11 21 chr1 218931062 218931157 -23733196 + CT-rich Low_complexity Low_complexity 2 95 0 312 310 18 26 chr1 218932514 218932627 -23731726 + MIR3 SINE MIR 90 201 -7 2025 147 0 0 chr1 218932744 218933043 -23731310 - AluJb SINE Alu -12 300 2 2161 95 44 14 chr1 218933887 218934182 -23730171 + AluSg SINE Alu 1 304 -6 2014 119 54 43 chr1 218934571 218934942 -23729411 - THE1C LTR MaLR 0 375 1 1482 192 7 43 chr1 218935283 218935585 -23728768 - AluJo SINE Alu -8 304 14 476 341 34 6 chr1 218935878 218936057 -23728296 - MIR3 SINE MIR -1 207 24 241 78 47 31 chr1 218936459 218936523 -23727830 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2436 80 0 10 chr1 218936535 218936837 -23727516 - AluSg SINE Alu -10 300 2 233 242 71 40 chr1 218938071 218938170 -23726183 + MIR SINE MIR 47 148 -60 4258 138 13 58 chr1 218938960 218939752 -23724601 + LTR39 LTR ERV1 19 774 -9 194 313 104 9 chr1 218939812 218939927 -23724426 + MIR3 SINE MIR 60 185 -23 255 340 19 19 chr1 218941528 218941631 -23722722 - MER5A DNA MER1_type 0 189 87 555 254 212 37 chr1 218941722 218941820 -23722533 - MIR SINE MIR 0 262 182 1781 174 7 7 chr1 218941820 218942114 -23722239 - AluJo SINE Alu -18 294 1 555 254 212 37 chr1 218942114 218942232 -23722121 - MIR SINE MIR -80 182 8 21 0 0 0 chr1 218942292 218942313 -23722040 + AT_rich Low_complexity Low_complexity 1 21 0 2124 159 18 9 chr1 218943163 218943503 -23720850 - MER61A LTR ERV1 0 343 1 294 303 25 41 chr1 218943629 218943751 -23720602 + L2 LINE L2 3146 3265 -7 1326 136 0 0 chr1 218943790 218943981 -23720372 - AluJb SINE Alu -7 305 115 182 283 0 0 chr1 218944049 218944095 -23720258 + MIR3 SINE MIR 146 191 -17 1028 207 44 119 chr1 218945868 218945981 -23718372 - LTR56 LTR ERV1 0 445 325 2018 165 0 0 chr1 218945981 218946290 -23718063 - AluJo SINE Alu -3 309 1 1028 207 44 119 chr1 218946290 218946569 -23717784 - LTR56 LTR ERV1 -120 325 87 1930 161 13 0 chr1 218946569 218946867 -23717486 - AluSx SINE Alu -10 302 1 1028 207 44 119 chr1 218946867 218946908 -23717445 - LTR56 LTR ERV1 -358 87 44 2318 93 3 37 chr1 218947768 218948090 -23716263 + AluSx SINE Alu 1 311 -1 180 278 130 0 chr1 218948159 218948213 -23716140 - L2 LINE L2 -2 3270 3210 1992 155 143 25 chr1 218948708 218949154 -23715199 + MLT1D LTR MaLR 6 504 -1 271 284 15 0 chr1 218949159 218949226 -23715127 + L2 LINE L2 3201 3268 -4 216 67 0 0 chr1 218950715 218950745 -23713608 + (CA)n Simple_repeat Simple_repeat 2 31 0 491 304 89 6 chr1 218951263 218951756 -23712597 - L1MC4a LINE L1 -312 5809 5354 21 0 0 0 chr1 218952707 218952728 -23711625 + AT_rich Low_complexity Low_complexity 1 21 0 2375 84 3 0 chr1 218952802 218953089 -23711264 + AluSq SINE Alu 12 299 -14 1772 175 3 7 chr1 218953448 218953745 -23710608 + AluJb SINE Alu 1 296 -16 2263 104 3 3 chr1 218953750 218954049 -23710304 + AluSx SINE Alu 1 299 -13 1591 253 78 8 chr1 218954605 218955092 -23709261 - LTR33 LTR ERVL 0 521 1 1884 198 81 21 chr1 218955306 218955741 -23708612 - LOR1b LTR ERV1 0 461 1 6280 107 136 68 chr1 218955745 218957003 -23707350 - LOR1b-int LTR ERV1 -2 8118 6776 9014 126 51 51 chr1 218957008 218957060 -23707293 - LOR1-int LTR ERV1 -2109 4489 4439 225 0 0 0 chr1 218957060 218957085 -23707268 + (GA)n Simple_repeat Simple_repeat 2 26 0 9014 126 51 51 chr1 218957085 218957817 -23706536 - LOR1-int LTR ERV1 -2159 4439 3709 1823 163 13 17 chr1 218957817 218958117 -23706236 - AluJb SINE Alu -13 299 1 9014 126 51 51 chr1 218958117 218959652 -23704701 - LOR1-int LTR ERV1 -2889 3709 2349 1042 42 36 36 chr1 218959662 218959755 -23704598 - LOR1-int LTR ERV1 -6254 1866 1771 1851 129 121 24 chr1 218959755 218960087 -23704266 - THE1B LTR MaLR 0 364 1 1042 42 36 36 chr1 218960087 218960161 -23704192 - LOR1-int LTR ERV1 -6348 1772 1699 6401 119 70 28 chr1 218961632 218962648 -23701705 - LOR1b-int LTR ERV1 -6420 1700 729 589 89 0 13 chr1 218962648 218962727 -23701626 - MADE1 DNA Mariner -2 78 1 6401 119 70 28 chr1 218962727 218962852 -23701501 - LOR1b-int LTR ERV1 -7391 729 611 275 107 18 107 chr1 218962852 218962908 -23701445 - 5S rRNA rRNA -70 51 1 6401 119 70 28 chr1 218962908 218963220 -23701133 - LOR1b-int LTR ERV1 -7509 611 198 2182 162 36 0 chr1 218963238 218963596 -23700757 - LOR1b-int LTR ERV1 -7749 371 1 2419 158 59 7 chr1 218963596 218964034 -23700319 - LOR1b LTR ERV1 0 461 1 1100 152 0 12 chr1 218964380 218964551 -23699802 - FRAM SINE Alu -9 167 1 386 261 0 0 chr1 218965122 218965210 -23699143 - L2 LINE L2 0 3313 3226 327 279 67 0 chr1 218965749 218965853 -23698500 - MIR SINE MIR -63 145 35 330 209 105 0 chr1 218966692 218966778 -23697575 + L2 LINE L2 3214 3308 -5 427 289 97 33 chr1 218967074 218967464 -23696889 + L1ME LINE L1 5254 5657 -509 372 235 29 20 chr1 218968188 218968290 -23696063 + L2 LINE L2 3209 3311 -2 601 301 15 15 chr1 218969477 218969673 -23694680 - MIR SINE MIR -30 232 37 407 319 40 0 chr1 218969779 218969932 -23694421 - MIR SINE MIR -62 200 42 183 271 17 0 chr1 218970341 218970400 -23693953 + MIR SINE MIR 94 153 -55 1743 209 41 36 chr1 218970598 218971010 -23693343 + MLT2D LTR ERVL 1 414 0 983 238 82 84 chr1 218972154 218972545 -23691808 - MLT1C LTR MaLR 0 467 1 414 297 110 49 chr1 218973139 218973584 -23690769 + L2 LINE L2 2830 3301 -12 315 0 0 0 chr1 218974043 218974078 -23690275 + (T)n Simple_repeat Simple_repeat 1 35 0 567 268 13 0 chr1 218974978 218975135 -23689218 + L1MC/D LINE L1 3372 3530 -2616 * 2020 211 26 59 chr1 218975125 218975892 -23688461 + L1MC/D LINE L1 5033 5772 -744 245 159 23 0 chr1 218976027 218976071 -23688282 + MER81 DNA DNA 55 99 -15 2033 123 31 0 chr1 218976402 218976695 -23687658 - AluSc SINE Alu -7 302 1 30 0 0 0 chr1 218976947 218976977 -23687376 + AT_rich Low_complexity Low_complexity 1 30 0 1994 130 7 3 chr1 218976985 218977270 -23687083 - AluSx SINE Alu -26 286 1 462 289 144 10 chr1 218977304 218977505 -23686848 - MIR SINE MIR -18 244 17 1561 146 6 85 chr1 218977709 218978038 -23686315 - AluSx SINE Alu -7 305 3 889 187 0 7 chr1 218978211 218978366 -23685987 - MLT1A2 LTR MaLR -220 154 1 548 238 121 49 chr1 218978387 218978610 -23685743 - MIR SINE MIR -4 258 20 554 248 196 38 chr1 218978975 218979241 -23685112 - L1MC/D LINE L1 -2004 5804 5497 445 251 30 42 chr1 218979364 218979531 -23684822 - MER5B DNA MER1_type -6 172 8 329 306 105 8 chr1 218979712 218979836 -23684517 + MER5B DNA MER1_type 43 178 0 982 169 11 6 chr1 218980082 218980259 -23684094 + MER5B DNA MER1_type 1 178 0 3812 137 24 3 chr1 218980799 218981390 -23682963 + LTR26 LTR ERV1 1 603 0 611 245 99 26 chr1 218981416 218981649 -23682704 - MIR SINE MIR 0 262 13 25 31 0 0 chr1 218982635 218982667 -23681686 + AT_rich Low_complexity Low_complexity 1 32 0 208 302 58 12 chr1 218983149 218983235 -23681118 + L2 LINE L2 3183 3272 0 260 260 240 0 chr1 218983759 218983905 -23680448 + MIR SINE MIR 78 258 -4 730 233 174 22 chr1 218983996 218984313 -23680040 + L1ME4a LINE L1 5709 6073 -48 24 0 0 0 chr1 218984883 218984907 -23679446 + AT_rich Low_complexity Low_complexity 1 24 0 624 188 111 0 chr1 218984910 218985027 -23679326 - FLAM_C SINE Alu -12 131 2 2444 61 14 0 chr1 218985037 218985334 -23679019 - AluY SINE Alu -10 301 1 377 283 104 69 chr1 218985335 218985827 -23678526 + L1ME4a LINE L1 5611 6119 -2 599 261 42 33 chr1 218987070 218987285 -23677068 - MIR SINE MIR -26 236 20 559 270 52 6 chr1 218987773 218987947 -23676406 - LTR16A LTR ERVL 0 450 269 236 275 0 0 chr1 218988147 218988227 -23676126 - HAL1 LINE L1 -172 2335 2256 1464 119 4 8 chr1 218988297 218988540 -23675813 - L1MA8 LINE L1 -4 6287 6046 437 302 22 17 chr1 218988541 218988720 -23675633 - LTR16A LTR ERVL -253 197 18 370 302 17 41 chr1 218989184 218989356 -23674997 - ERVL LTR ERVL -815 4949 4782 2333 95 3 0 chr1 218989534 218989828 -23674525 - AluSp SINE Alu -13 300 6 303 260 164 14 chr1 218990054 218990200 -23674153 - MIR SINE MIR -14 248 81 324 257 67 29 chr1 218990294 218990399 -23673954 - MER5A DNA MER1_type -29 160 52 3138 72 12 7 chr1 218990401 218990816 -23673537 - L1PA10 LINE L1 -5 6163 5747 270 248 32 0 chr1 218991318 218991406 -23672947 - MIR SINE MIR -46 162 70 290 274 160 0 chr1 218991665 218991771 -23672582 - L1ME4a LINE L1 -24 6097 5975 281 275 0 0 chr1 218991907 218991976 -23672377 + (CTA)n Simple_repeat Simple_repeat 1 69 0 226 113 65 16 chr1 218992013 218992075 -23672278 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 301 284 80 12 chr1 218992114 218992303 -23672050 - MIR3 SINE MIR -57 205 7 1896 167 128 0 chr1 218992439 218992822 -23671531 + MSTB1 LTR MaLR 1 432 0 504 275 96 29 chr1 218993343 218993583 -23670770 + MER112 DNA MER1_type 1 256 0 237 299 0 13 chr1 218993714 218993791 -23670562 + L2 LINE L2 3179 3254 -18 439 302 80 13 chr1 218994338 218994563 -23669790 + MIR SINE MIR 17 256 -6 272 340 0 19 chr1 218994851 218994957 -23669396 + MIR SINE MIR 49 152 -110 2488 171 108 152 chr1 218995808 218995920 -23668433 - L1MC4a LINE L1 -1013 6795 6680 1877 136 65 0 chr1 218995920 218996199 -23668154 + AluSx SINE Alu 5 301 -11 2488 171 108 152 chr1 218996199 218996823 -23667530 - L1MC4a LINE L1 -1128 6680 6122 1882 158 0 14 chr1 218996823 218997114 -23667239 + AluSx SINE Alu 1 287 -25 2488 171 108 152 chr1 218997114 218997496 -23666857 - L1MC4a LINE L1 -1686 6122 5725 257 324 0 0 chr1 218998205 218998279 -23666074 - MIR SINE MIR -66 142 69 394 220 55 73 chr1 218998279 218998388 -23665965 - ORSL DNA AcHobo 0 275 169 389 274 67 100 chr1 218999021 218999291 -23665062 + MIR SINE MIR 2 262 0 309 357 42 0 chr1 218999331 218999474 -23664879 + L2 LINE L2 3124 3272 0 1104 308 108 31 chr1 219000004 219000690 -23663663 + L3 LINE CR1 572 1310 -267 720 189 105 37 chr1 219000693 219000884 -23663469 + MER3 DNA MER1_type 1 204 -5 1038 175 85 20 chr1 219000917 219001163 -23663190 - MER58B DNA MER1_type -2 339 78 1210 138 0 95 chr1 219001164 219001396 -23662957 + AluSg/x SINE Alu 101 310 0 474 218 0 0 chr1 219001402 219001480 -23662873 - MER58B DNA MER1_type -260 81 4 443 281 30 18 chr1 219001491 219001658 -23662695 + L3 LINE CR1 1330 1498 -79 1379 114 0 0 chr1 219001940 219002116 -23662237 - AluSx SINE Alu -117 195 20 441 262 62 7 chr1 219002775 219002920 -23661433 - L1MC5 LINE L1 -52 7909 7757 377 285 188 5 chr1 219004217 219004403 -23659950 - MIR SINE MIR -14 248 29 2312 124 86 5 chr1 219004613 219005009 -23659344 - MSTA LTR MaLR 0 428 1 3511 100 78 33 chr1 219005009 219005561 -23658792 + MER4B LTR ERV1 34 610 0 278 288 0 72 chr1 219005737 219005862 -23658491 + L2 LINE L2 3156 3271 -1 703 257 80 112 chr1 219005941 219006431 -23657922 + LTR40a LTR ERVL 4 477 -42 365 244 181 25 chr1 219006552 219006712 -23657641 + MIR SINE MIR 72 256 -6 300 274 150 16 chr1 219007025 219007210 -23657143 - MIR SINE MIR -40 222 19 441 251 35 79 chr1 219007550 219007777 -23656576 + LTR67 LTR ERVL 2 218 -339 1116 174 190 4 chr1 219008404 219008662 -23655691 - LOR1a LTR ERV1 0 497 192 387 132 0 0 chr1 219008662 219008730 -23655623 - LOR1a LTR ERV1 -192 305 238 205 163 47 0 chr1 219009080 219009123 -23655230 + T-rich Low_complexity Low_complexity 2 46 0 435 154 23 19 chr1 219010323 219010451 -23653902 + MER58B DNA MER1_type 171 341 0 369 330 44 33 chr1 219010711 219010893 -23653460 + MIR SINE MIR 2 185 -77 244 207 11 92 chr1 219011863 219011950 -23652403 - MIR SINE MIR -110 152 73 2012 114 75 31 chr1 219012259 219012618 -23651735 + THE1C LTR MaLR 1 375 0 708 250 74 60 chr1 219013271 219013555 -23650798 - MLT1J LTR MaLR 0 511 224 1011 145 69 148 chr1 219013566 219013617 -23650736 - AluJo SINE Alu -6 306 253 2189 125 41 24 chr1 219013617 219013986 -23650367 + THE1C LTR MaLR 1 375 0 1011 145 69 148 chr1 219013986 219014266 -23650087 - AluJo SINE Alu -59 253 1 574 259 104 16 chr1 219014267 219014460 -23649893 - MLT1J LTR MaLR -301 210 1 429 319 140 18 chr1 219014954 219015183 -23649170 - MIR SINE MIR -2 260 4 208 147 0 0 chr1 219015863 219015897 -23648456 + (T)n Simple_repeat Simple_repeat 1 34 0 2090 107 0 7 chr1 219016117 219016415 -23647938 + AluSx SINE Alu 1 296 -16 902 176 11 5 chr1 219016553 219016740 -23647613 + MER53 DNA DNA 1 188 -1 1876 237 99 62 chr1 219016797 219017604 -23646749 - HAL1 LINE L1 0 2507 1671 13852 140 24 41 chr1 219019366 219019930 -23644423 - L1M1 LINE L1 -5216 2349 1777 1896 133 0 4 chr1 219019930 219020209 -23644144 + AluSx SINE Alu 3 280 -32 13852 140 24 41 chr1 219020209 219021988 -23642365 - L1M1 LINE L1 -5788 1777 45 1709 117 0 134 chr1 219022130 219022481 -23641872 - AluSx SINE Alu -8 304 1 920 238 132 108 chr1 219022604 219023096 -23641257 + MLT1K LTR MaLR 11 514 -74 2309 69 0 0 chr1 219023107 219023419 -23640934 - AluY SINE Alu 0 312 1 7903 13 8 0 chr1 219024181 219025075 -23639278 + L1PA3 LINE L1 5254 6154 -1 256 154 39 90 chr1 219025768 219025846 -23638507 - MER5B DNA MER1_type -20 158 85 846 230 135 87 chr1 219025848 219026216 -23638137 - L1MC4 LINE L1 -1 8041 7641 1983 117 10 26 chr1 219026216 219026525 -23637828 + AluSq SINE Alu 3 306 -7 846 230 135 87 chr1 219026525 219026652 -23637701 - L1MC4 LINE L1 -401 7641 7522 402 299 80 77 chr1 219027126 219027528 -23636825 + L2 LINE L2 2865 3267 -5 300 219 144 94 chr1 219027581 219027607 -23636746 - MIR3 SINE MIR -6 202 179 1539 224 49 21 chr1 219027607 219028035 -23636318 + LTR47B LTR ERVL 2 441 -2 300 219 144 94 chr1 219028035 219028168 -23636185 - MIR3 SINE MIR -29 179 35 2101 128 0 0 chr1 219028338 219028642 -23635711 - AluSx SINE Alu 0 312 9 422 191 36 0 chr1 219028999 219029083 -23635270 + MER5A DNA MER1_type 26 112 -77 238 198 286 11 chr1 219029008 219029099 -23635254 - MER5A DNA MER1_type -23 166 51 * 418 292 112 37 chr1 219029790 219030218 -23634135 + L2 LINE L2 1705 2164 -1150 463 272 92 75 chr1 219030231 219030459 -23633894 + Charlie8 DNA MER1_type 13 244 -2173 1692 152 26 64 chr1 219031204 219031547 -23632806 - MER44D DNA MER2_type 0 609 10 319 316 63 0 chr1 219032009 219032104 -23632249 - L2 LINE L2 -3 3269 3169 249 343 72 80 chr1 219032181 219032432 -23631921 + L2 LINE L2 3006 3254 -18 956 205 0 6 chr1 219032705 219032871 -23631482 - FRAM SINE Alu -1 165 1 2112 131 0 0 chr1 219032903 219033208 -23631145 + AluJb SINE Alu 5 309 -3 347 253 195 39 chr1 219033582 219033736 -23630617 - MER5B DNA MER1_type 0 178 1 233 366 116 24 chr1 219033761 219033925 -23630428 + L2 LINE L2 3094 3272 0 595 293 90 5 chr1 219034829 219035041 -23629312 + MIR SINE MIR 33 262 0 22 0 0 0 chr1 219035187 219035209 -23629144 + AT_rich Low_complexity Low_complexity 1 22 0 1995 133 3 0 chr1 219035209 219035502 -23628851 - AluJb SINE Alu -18 294 1 454 318 158 36 chr1 219036522 219036894 -23627459 + L2 LINE L2 1898 2223 -1091 2193 151 62 26 chr1 219036894 219037311 -23627042 - MSTB1 LTR MaLR 0 432 1 454 318 158 36 chr1 219037311 219037582 -23626771 + L2 LINE L2 2223 2620 -694 246 304 64 96 chr1 219037720 219037845 -23626508 + L2 LINE L2 3134 3254 -18 1832 176 31 17 chr1 219038533 219038886 -23625467 - MLT1A1 LTR MaLR -7 358 1 1137 265 98 15 chr1 219039414 219040081 -23624272 - L2 LINE L2 -34 3279 2551 317 270 0 40 chr1 219040441 219040515 -23623838 + L2 LINE L2 3243 3313 0 203 167 0 0 chr1 219040521 219040557 -23623796 - L2 LINE L2 -20 3252 3217 690 286 22 26 chr1 219040933 219041187 -23623166 - MIR SINE MIR -2 260 8 4508 41 13 0 chr1 219044145 219044684 -23619669 - L1PA5 LINE L1 -3 6151 5606 1656 185 3 3 chr1 219045369 219045666 -23618687 - AluJo SINE Alu -15 297 1 1514 227 95 46 chr1 219045802 219046309 -23618044 - LTR26 LTR ERV1 0 597 70 275 336 36 58 chr1 219046511 219046648 -23617705 + L2 LINE L2 3180 3313 0 2000 72 83 0 chr1 219046799 219047076 -23617277 + AluSq SINE Alu 1 300 -13 391 211 240 40 chr1 219047293 219047468 -23616885 + MIR SINE MIR 53 262 0 206 330 74 35 chr1 219048090 219048293 -23616060 + L3b LINE CR1 1208 1418 -165 2079 117 0 0 chr1 219048327 219048618 -23615735 - AluSx SINE Alu -5 307 17 571 236 149 0 chr1 219049274 219049422 -23614931 - MER45A DNA AcHobo 0 178 9 420 284 59 50 chr1 219049429 219049808 -23614545 + MLT1H LTR MaLR 44 533 -16 1400 160 27 37 chr1 219050152 219050446 -23613907 + AluJo SINE Alu 1 291 -21 775 268 24 9 chr1 219050736 219050949 -23613404 - MIR SINE MIR -42 220 5 363 236 236 71 chr1 219051489 219051799 -23612554 - MLT1H LTR MaLR -2 547 187 292 340 99 19 chr1 219051953 219052115 -23612238 - MER5B DNA MER1_type -2 176 2 1877 199 14 62 chr1 219052616 219052738 -23611615 + MLT2D LTR ERVL 4 130 -284 3556 76 8 18 chr1 219052738 219053227 -23611126 + L1PB2 LINE L1 5665 6148 -3 1877 199 14 62 chr1 219053227 219053494 -23610859 + MLT2D LTR ERVL 130 373 -41 342 0 0 0 chr1 219053494 219053532 -23610821 + (CA)n Simple_repeat Simple_repeat 2 39 0 1877 199 14 62 chr1 219053532 219053573 -23610780 + MLT2D LTR ERVL 373 414 0 215 253 310 0 chr1 219053640 219053727 -23610626 - MIR SINE MIR -77 185 72 685 267 86 44 chr1 219054142 219054600 -23609753 - MLT1J LTR MaLR -8 503 1 219 240 40 90 chr1 219054832 219054909 -23609444 - L2 LINE L2 0 3272 3200 263 28 28 0 chr1 219054909 219054945 -23609408 + (TG)n Simple_repeat Simple_repeat 2 38 0 219 240 40 90 chr1 219054945 219054967 -23609386 - L2 LINE L2 -72 3200 3178 614 239 101 0 chr1 219055374 219055533 -23608820 - MER5B DNA MER1_type -3 175 1 204 40 0 0 chr1 219056989 219057014 -23607339 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 180 158 132 0 chr1 219057120 219057158 -23607195 - MIR SINE MIR -171 91 49 1271 168 46 0 chr1 219057532 219057770 -23606583 - MLT1B LTR MaLR -11 379 131 * 1556 205 24 41 chr1 219057768 219058109 -23606244 + LTR32 LTR ERVL 15 349 -122 256 204 61 0 chr1 219058197 219058246 -23606107 + LTR32 LTR ERVL 317 368 -103 841 199 0 7 chr1 219058246 219058397 -23605956 + LTR32 LTR ERVL 317 466 -5 807 155 7 28 chr1 219058401 219058543 -23605810 - MLT1B LTR MaLR -251 139 1 222 146 0 49 chr1 219060705 219060746 -23603607 + L2 LINE L2 3272 3310 -3 435 298 82 6 chr1 219061773 219061944 -23602409 - MER5A DNA MER1_type -2 187 4 615 176 182 0 chr1 219061949 219062097 -23602256 - MER5A DNA MER1_type -6 183 9 633 209 14 27 chr1 219062113 219062261 -23602092 + MER5A DNA MER1_type 44 189 0 686 173 30 30 chr1 219063447 219063580 -23600773 + AluJo SINE Alu 3 135 -177 222 233 17 0 chr1 219064420 219064440 -23599913 + (TAA)n Simple_repeat Simple_repeat 1 19 -42 2087 118 0 3 chr1 219064440 219064729 -23599624 + AluSg SINE Alu 1 288 -22 222 233 17 0 chr1 219064729 219064768 -23599585 + (TAA)n Simple_repeat Simple_repeat 19 61 0 189 319 0 14 chr1 219064853 219064922 -23599431 - MIR SINE MIR -120 142 75 311 260 146 24 chr1 219066510 219066633 -23597720 - L3 LINE CR1 -6 1571 1434 529 329 84 22 chr1 219066754 219066790 -23597563 - MLT1I LTR MaLR -1 408 376 198 0 0 0 chr1 219066790 219066812 -23597541 + (CAA)n Simple_repeat Simple_repeat 2 23 0 529 329 84 22 chr1 219066812 219067049 -23597304 - MLT1I LTR MaLR -33 376 118 187 321 0 36 chr1 219068350 219068434 -23595919 - L2 LINE L2 -9 3304 3224 2088 124 0 3 chr1 219068640 219068947 -23595406 + AluSx SINE Alu 1 306 -6 207 213 16 0 chr1 219069039 219069100 -23595253 + (TA)n Simple_repeat Simple_repeat 1 62 0 2861 113 18 20 chr1 219070337 219070795 -23593558 + L1MB7 LINE L1 5712 6168 -16 259 356 110 0 chr1 219071091 219071209 -23593144 - L2 LINE L2 0 3313 3183 283 366 113 23 chr1 219071545 219071933 -23592420 - L2 LINE L2 -541 2773 2351 370 306 23 13 chr1 219072012 219072189 -23592164 - MIR SINE MIR -67 141 3 228 320 39 39 chr1 219072401 219072504 -23591849 + L2 LINE L2 3152 3254 -18 451 249 24 73 chr1 219072699 219072864 -23591489 - MIR SINE MIR -43 219 63 1368 155 20 57 chr1 219075202 219075499 -23588854 - AluJb SINE Alu 0 312 27 312 288 151 49 chr1 219075504 219075687 -23588666 - MIR SINE MIR -31 231 23 1889 135 17 3 chr1 219075687 219075983 -23588370 - AluJo SINE Alu -10 302 3 312 288 151 49 chr1 219075983 219076004 -23588349 - MIR SINE MIR -239 23 6 306 291 136 10 chr1 219076065 219076168 -23588185 + MER5A DNA MER1_type 55 170 -19 220 219 302 21 chr1 219077271 219077367 -23586986 - MIR SINE MIR -139 123 1 229 348 82 54 chr1 219077627 219077811 -23586542 + L2 LINE L2 3046 3234 -38 225 0 0 0 chr1 219078859 219078884 -23585469 + (T)n Simple_repeat Simple_repeat 1 25 0 1775 155 20 3 chr1 219080658 219080955 -23583398 - AluJb SINE Alu -10 302 1 307 331 35 35 chr1 219081113 219081282 -23583071 - MIR SINE MIR -14 248 80 455 258 86 71 chr1 219081341 219081557 -23582796 - MIR SINE MIR -33 229 8 364 310 92 7 chr1 219081809 219081951 -23582402 + MIR SINE MIR 87 240 -22 2402 162 61 0 chr1 219081990 219082386 -23581967 - MSTB LTR MaLR -6 420 1 642 344 17 9 chr1 219082588 219082818 -23581535 - MIR SINE MIR 0 262 31 465 284 65 12 chr1 219082986 219083155 -23581198 + MIR SINE MIR 78 255 -7 2299 85 0 3 chr1 219083825 219084132 -23580221 - AluSx SINE Alu -6 306 1 1724 179 64 3 chr1 219084472 219084801 -23579552 - MER63 DNA MER1_type 0 1061 713 464 319 128 16 chr1 219085848 219086105 -23578248 + L3 LINE CR1 585 870 -707 203 273 0 45 chr1 219086110 219086176 -23578177 + L3 LINE CR1 1088 1150 -427 219 88 0 0 chr1 219087193 219087227 -23577126 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 295 348 19 39 chr1 219088022 219088177 -23576176 + MIR SINE MIR 54 205 -57 234 0 0 0 chr1 219088365 219088391 -23575962 + (T)n Simple_repeat Simple_repeat 1 26 0 268 325 71 16 chr1 219089296 219089422 -23574931 - L2 LINE L2 -583 2731 2599 * 926 273 8 31 chr1 219089421 219089677 -23574676 - MIR SINE MIR 0 262 13 1664 190 49 19 chr1 219089893 219090261 -23574092 + LTR52 LTR ERVL 2 380 -41 278 319 69 0 chr1 219090348 219090464 -23573889 - L2 LINE L2 -965 2349 2226 419 0 20 0 chr1 219090656 219090707 -23573646 + (CA)n Simple_repeat Simple_repeat 2 53 0 185 211 19 0 chr1 219091696 219091748 -23572605 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 204 40 0 0 chr1 219091868 219091893 -23572460 + (TCCA)n Simple_repeat Simple_repeat 4 28 0 1687 118 0 0 chr1 219092307 219092545 -23571808 - AluSg SINE Alu -16 294 57 1536 191 130 6 chr1 219093043 219093467 -23570886 - MLT1F LTR MaLR 0 542 1 626 155 68 0 chr1 219093701 219093804 -23570549 - AluJb SINE Alu -21 291 182 321 122 0 20 chr1 219093804 219093853 -23570500 + AluY SINE Alu 141 188 -113 244 274 253 7 chr1 219093897 219094043 -23570310 - MIR SINE MIR -3 259 78 252 0 0 0 chr1 219094719 219094747 -23569606 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 235 305 172 35 chr1 219095497 219095671 -23568682 + L3b LINE CR1 1120 1317 -266 239 250 17 17 chr1 219097154 219097214 -23567139 + MIR SINE MIR 90 149 -59 353 287 18 96 chr1 219098740 219098907 -23565446 - MER5B DNA MER1_type -24 154 1 585 183 24 16 chr1 219098947 219099073 -23565280 - MER5A DNA MER1_type -62 127 1 2199 99 3 0 chr1 219099388 219099690 -23564663 + AluSp SINE Alu 1 303 -10 23 0 0 0 chr1 219100741 219100764 -23563589 + AT_rich Low_complexity Low_complexity 1 23 0 261 274 128 12 chr1 219101443 219101607 -23562746 + L1M4 LINE L1 3662 3844 -2302 797 274 50 43 chr1 219101668 219101790 -23562563 - L2 LINE L2 -559 2755 2635 1918 184 52 50 chr1 219101790 219102294 -23562059 + MLT1D LTR MaLR 1 505 0 797 274 50 43 chr1 219102294 219102474 -23561879 - L2 LINE L2 -679 2635 2451 2357 228 3 40 chr1 219104272 219104851 -23559502 + MER74A LTR ERVL 1 558 0 267 250 0 0 chr1 219104852 219104908 -23559445 + L2 LINE L2 3214 3269 -3 264 341 80 10 chr1 219105550 219105864 -23558489 + L1M4 LINE L1 3914 4249 -1897 3777 179 17 14 chr1 219105990 219106700 -23557653 + HERVH LTR ERV1 7002 7713 0 656 207 7 27 chr1 219106852 219107002 -23557351 + LTR7 LTR ERV1 303 449 -1 * 1445 111 48 0 chr1 219107002 219107189 -23557164 - THE1B LTR MaLR -167 197 1 531 163 22 0 chr1 219107247 219107339 -23557014 - MER89 LTR ERV1 -465 94 1 * 819 250 127 5 chr1 219107339 219107558 -23556795 - MER110A LTR ERV1 -184 284 39 347 208 132 107 chr1 219107700 219107859 -23556494 - MIR SINE MIR -93 169 7 880 174 0 92 chr1 219108663 219108772 -23555581 + MER5B DNA MER1_type 1 118 -60 2326 78 3 7 chr1 219108772 219109078 -23555275 + AluSp SINE Alu 1 305 -8 880 174 0 92 chr1 219109078 219109119 -23555234 + MER5B DNA MER1_type 118 132 -46 2636 147 56 9 chr1 219109119 219109582 -23554771 - MER31A LTR ERV1 0 485 1 880 174 0 92 chr1 219109582 219109626 -23554727 + MER5B DNA MER1_type 132 178 0 1369 163 4 9 chr1 219110505 219110732 -23553621 + MLT1A1 LTR MaLR 140 365 0 664 154 9 9 chr1 219110733 219110843 -23553510 - MLT1A1 LTR MaLR -255 110 1 273 297 67 61 chr1 219110921 219111086 -23553267 - MIR3 SINE MIR -23 185 20 2811 163 44 20 chr1 219111208 219111754 -23552599 - MER89 LTR ERV1 0 559 1 3554 175 67 23 chr1 219112329 219113078 -23551275 + L1MB8 LINE L1 5401 6334 0 330 141 26 38 chr1 219113443 219113529 -23550824 + AluJ/FLAM SINE Alu 35 97 -205 252 197 0 30 chr1 219113714 219113780 -23550573 + CT-rich Low_complexity Low_complexity 5 68 0 229 247 39 26 chr1 219113965 219114042 -23550311 - MIR SINE MIR -62 146 69 1363 199 92 35 chr1 219114096 219114443 -23549910 - MER93b LTR ERV1 -2 371 5 284 290 151 7 chr1 219115786 219115923 -23548430 + MIR3 SINE MIR 14 171 -63 257 243 29 96 chr1 219115941 219116077 -23548276 - L2 LINE L2 -1 3271 3145 * 283 266 0 0 chr1 219116051 219116115 -23548238 + MER5B DNA MER1_type 64 127 -51 1155 188 14 5 chr1 219116118 219116325 -23548028 - AluJb SINE Alu -19 293 85 216 172 259 0 chr1 219116422 219116480 -23547873 - L2 LINE L2 -214 3058 2986 5822 120 49 8 chr1 219116677 219117350 -23547003 + L1PB2 LINE L1 4883 5620 -531 2276 111 0 0 chr1 219117350 219117647 -23546706 + AluSx SINE Alu 1 297 -15 5822 120 49 8 chr1 219117647 219118202 -23546151 + L1PB2 LINE L1 5620 6150 -1 22 0 0 0 chr1 219118216 219118238 -23546115 + AT_rich Low_complexity Low_complexity 1 22 0 617 261 25 105 chr1 219118988 219119146 -23545207 + MIR SINE MIR 8 136 -126 1985 121 7 0 chr1 219119146 219119426 -23544927 + AluSx SINE Alu 1 282 -30 617 261 25 105 chr1 219119426 219119543 -23544810 + MIR SINE MIR 136 261 -1 1707 158 19 67 chr1 219119653 219119969 -23544384 + Tigger7 DNA MER2_type 2 302 -2185 193 270 174 50 chr1 219120404 219120645 -23543708 + L2 LINE L2 2926 3196 -117 2662 126 20 25 chr1 219120745 219121183 -23543170 + HERVH LTR ERV1 2560 2995 -4718 1012 113 7 0 chr1 219121162 219121312 -23543041 + HERVH LTR ERV1 3140 3290 -4423 * 8079 146 5 12 chr1 219121302 219123041 -23541312 + HERVH LTR ERV1 3492 5149 -2297 1273 159 9 9 chr1 219123042 219123262 -23541091 + HERVH LTR ERV1 5600 5819 -1894 522 114 0 13 chr1 219123262 219123341 -23541012 + HERVH LTR ERV1 7324 7401 -312 4767 198 4 14 chr1 219123474 219124424 -23539929 + HERVH LTR ERV1 2843 3783 -3930 * 15010 173 14 6 chr1 219124412 219127059 -23537294 + HERVH LTR ERV1 4081 6749 -964 292 186 93 52 chr1 219127159 219127256 -23537097 - MIR SINE MIR -101 161 61 863 191 143 0 chr1 219127271 219127460 -23536893 - MER89 LTR ERV1 -192 367 152 23 33 0 0 chr1 219128509 219128539 -23535814 + AT_rich Low_complexity Low_complexity 1 30 0 545 188 101 72 chr1 219128852 219128990 -23535363 - FLAM_A SINE Alu 0 142 1 553 254 119 27 chr1 219130774 219130959 -23533394 + MIR SINE MIR 43 244 -18 450 176 0 0 chr1 219131346 219131431 -23532922 + (TATG)n Simple_repeat Simple_repeat 4 88 0 229 264 214 14 chr1 219132109 219132249 -23532104 + MIR SINE MIR 81 248 -14 284 261 190 41 chr1 219133511 219133706 -23530647 + MIR SINE MIR 21 244 -18 252 287 7 98 chr1 219133878 219133925 -23530428 + L3 LINE CR1 449 499 -1078 2065 86 0 15 chr1 219133925 219134194 -23530159 + AluY SINE Alu 34 298 -13 252 287 7 98 chr1 219134194 219134289 -23530064 + L3 LINE CR1 499 578 -999 1027 309 116 68 chr1 219134810 219135103 -23529250 + L3 LINE CR1 567 845 -732 2167 156 44 16 chr1 219135103 219135468 -23528885 + THE1C LTR MaLR 1 375 0 1027 309 116 68 chr1 219135468 219136009 -23528344 + L3 LINE CR1 845 1441 -136 670 238 120 82 chr1 219136077 219136443 -23527910 + MLT1J LTR MaLR 8 387 -124 272 304 196 0 chr1 219136460 219136552 -23527801 - L2 LINE L2 -26 3246 3137 2139 116 0 3 chr1 219136672 219136957 -23527396 - AluSg SINE Alu -12 298 15 287 287 108 23 chr1 219136959 219137088 -23527265 - MIR SINE MIR -110 152 13 3476 101 11 2 chr1 219138296 219138743 -23525610 - MLT2A2 LTR ERVL -2 451 1 371 285 123 6 chr1 219138901 219139080 -23525273 - MIR SINE MIR -55 207 8 2059 67 7 30 chr1 219139870 219140140 -23524213 - AluY SINE Alu -15 296 33 22 0 0 0 chr1 219140511 219140533 -23523820 + AT_rich Low_complexity Low_complexity 1 22 0 2400 94 0 0 chr1 219140535 219140843 -23523510 + AluY SINE Alu 3 310 -1 515 238 12 50 chr1 219141122 219141365 -23522988 - L1ME2 LINE L1 -280 5884 5662 1078 220 76 125 chr1 219141393 219141906 -23522447 - LTR45B LTR ERV1 0 489 2 257 212 0 30 chr1 219141926 219141992 -23522361 + MLT1I LTR MaLR 95 158 -391 369 243 62 62 chr1 219142285 219142429 -23521924 + MLT1I LTR MaLR 285 549 0 2156 126 3 0 chr1 219142682 219143017 -23521336 - AluSx SINE Alu 0 312 1 1438 90 22 36 chr1 219143041 219143263 -23521090 - AluSp SINE Alu -4 309 91 3351 197 91 11 chr1 219143270 219143425 -23520928 - L1ME1 LINE L1 -3 6163 6022 314 23 0 23 chr1 219143425 219143469 -23520884 + (CCCCAG)n Simple_repeat Simple_repeat 4 46 0 3351 197 91 11 chr1 219143469 219144096 -23520257 - L1ME1 LINE L1 -144 6022 5319 1269 222 8 97 chr1 219144096 219144447 -23519906 - MLT1A1 LTR MaLR 0 365 46 1710 178 64 57 chr1 219144892 219145313 -23519040 - LTR37A LTR ERV1 -2 424 1 261 317 0 49 chr1 219145322 219145445 -23518908 + MLT1F1-int LTR MaLR 1023 1139 -232 1672 122 88 68 chr1 219145447 219145800 -23518553 - MER46B DNA MER2_type 0 236 2 1997 107 7 11 chr1 219146558 219146874 -23517479 + AluSg SINE Alu 1 315 0 322 303 218 0 chr1 219147234 219147399 -23516954 + MIR3 SINE MIR 7 207 -1 1295 175 91 10 chr1 219147559 219147856 -23516497 + L1ME2 LINE L1 5640 5960 -204 480 236 11 55 chr1 219147961 219148143 -23516210 + L1ME2 LINE L1 5976 6149 -15 237 310 31 88 chr1 219148191 219148417 -23515936 + L1MC4 LINE L1 7829 8041 -1 5460 122 36 14 chr1 219148504 219149370 -23514983 + L1MA4A LINE L1 5416 6300 -3 484 234 66 113 chr1 219149468 219149725 -23514628 + MLT1F1 LTR MaLR 1 253 -297 374 236 228 0 chr1 219149725 219149848 -23514505 + MIR SINE MIR 94 244 -18 873 266 202 26 chr1 219149855 219150377 -23513976 - L2 LINE L2 0 3313 2687 592 181 30 126 chr1 219150699 219150835 -23513518 - MLT2B3 LTR ERVL -374 180 67 2595 46 0 10 chr1 219150835 219151141 -23513212 - AluY SINE Alu -8 303 1 592 181 30 126 chr1 219151141 219151203 -23513150 - MLT2B3 LTR ERVL -487 67 1 1604 242 47 34 chr1 219151824 219152295 -23512058 - L1ME3A LINE L1 -1 6169 5693 2136 118 0 7 chr1 219152382 219152707 -23511646 - AluSg SINE Alu 0 310 1 1125 167 32 71 chr1 219152834 219153116 -23511237 + MLT2B3 LTR ERVL 281 551 -3 189 0 0 0 chr1 219153177 219153198 -23511155 + (A)n Simple_repeat Simple_repeat 1 21 0 186 256 0 0 chr1 219153241 219153284 -23511069 + L2 LINE L2 2601 2643 -671 294 191 0 16 chr1 219153554 219153617 -23510736 + MLT1K LTR MaLR 188 249 -339 2496 81 0 0 chr1 219153985 219154294 -23510059 + AluY SINE Alu 1 309 -2 3363 143 107 115 chr1 219154294 219154965 -23509388 + L1MA7 LINE L1 5393 6121 -170 226 200 31 31 chr1 219154965 219155030 -23509323 - MER63 DNA MER1_type -218 842 778 3363 143 107 115 chr1 219155030 219155200 -23509153 + L1MA7 LINE L1 6121 6291 0 3132 223 39 15 chr1 219155235 219156091 -23508262 + L1M4 LINE L1 3562 4437 -1709 719 214 13 0 chr1 219156094 219156253 -23508100 + MLT2B1 LTR ERVL 3 163 -357 766 205 38 22 chr1 219156258 219156443 -23507910 + MSTD LTR MaLR 4 191 -205 1352 182 69 22 chr1 219156444 219156719 -23507634 + AluJo SINE Alu 1 288 -24 2227 92 13 3 chr1 219156719 219157022 -23507331 - L1PA10 LINE L1 -485 5683 5378 3697 77 11 0 chr1 219157022 219157467 -23506886 + L1PA10 LINE L1 5690 6149 -19 1344 92 12 6 chr1 219157467 219157640 -23506713 + AluSq SINE Alu 15 188 -125 443 259 22 79 chr1 219158237 219158376 -23505977 + MLT2B1 LTR ERVL 275 405 -115 384 40 0 0 chr1 219158381 219158431 -23505922 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 498 128 12 12 chr1 219158449 219158535 -23505818 - L1 LINE L1 -1747 4399 4314 363 157 43 0 chr1 219158675 219158744 -23505609 - LTR54B LTR ERV1 -15 495 424 1560 168 50 10 chr1 219158744 219159047 -23505306 + MER61A LTR ERV1 1 315 -28 906 128 93 26 chr1 219159056 219159352 -23505001 - LTR54B LTR ERV1 -83 427 21 2297 120 127 41 chr1 219159352 219159568 -23504785 - MSTA LTR MaLR -1 427 231 1909 164 0 7 chr1 219159568 219159867 -23504486 - AluJo SINE Alu -15 297 1 2297 120 127 41 chr1 219159867 219160043 -23504310 - MSTA LTR MaLR -197 231 1 906 128 93 26 chr1 219160043 219160066 -23504287 - LTR54B LTR ERV1 -489 21 1 502 234 18 0 chr1 219160088 219160199 -23504154 - LTR49-int LTR ERV1 -538 7278 7166 487 252 20 14 chr1 219160417 219160564 -23503789 - LTR49-int LTR ERV1 -7047 490 343 * 670 312 31 65 chr1 219160552 219160905 -23503448 - LTR49-int LTR ERV1 -4092 2239 1899 1100 143 71 32 chr1 219160905 219160952 -23503401 - LTR54 LTR ERV1 -1 509 465 2115 125 0 7 chr1 219160952 219161249 -23503104 - AluSx SINE Alu -17 295 1 1100 143 71 32 chr1 219161249 219161455 -23502898 - LTR54 LTR ERV1 -45 465 213 1103 168 0 10 chr1 219161571 219161779 -23502574 - L1 LINE L1 -2097 4049 3844 545 262 42 6 chr1 219161763 219161931 -23502422 - L1MC4a LINE L1 -107 7701 7528 * 2060 126 76 25 chr1 219161936 219162293 -23502060 + THE1C LTR MaLR 1 375 0 239 278 0 14 chr1 219162298 219162370 -23501983 - MER5B DNA MER1_type -74 104 34 740 282 50 12 chr1 219162452 219162693 -23501660 - MIR SINE MIR 0 262 13 2244 154 3 40 chr1 219162855 219163231 -23501122 - MER47A DNA MER2_type -3 363 2 1398 249 95 10 chr1 219163846 219164236 -23500117 - LTR16C LTR ERVL 0 491 69 194 345 60 108 chr1 219165239 219165555 -23498798 - L2 LINE L2 -39 3233 2933 1040 222 212 31 chr1 219166524 219166747 -23497606 + MLT1G3 LTR MaLR 1 182 -348 261 0 0 0 chr1 219166747 219166776 -23497577 + (TC)n Simple_repeat Simple_repeat 1 29 0 1040 222 212 31 chr1 219166776 219167059 -23497294 + MLT1G3 LTR MaLR 182 530 0 439 165 9 17 chr1 219167664 219167779 -23496574 - Charlie7 DNA MER1_type -31 2581 2468 330 232 123 16 chr1 219168188 219168325 -23496028 - MLT1J2 LTR MaLR -270 241 60 198 200 22 22 chr1 219168833 219168878 -23495475 - MER5A DNA MER1_type -2 187 143 189 0 0 0 chr1 219168878 219168899 -23495454 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 330 26 0 0 chr1 219168898 219168937 -23495416 + (GA)n Simple_repeat Simple_repeat 2 40 0 209 281 30 13 chr1 219168939 219169017 -23495336 - MER5A DNA MER1_type -88 101 11 567 238 48 52 chr1 219169412 219169643 -23494710 - LTR16C LTR ERVL -94 397 168 688 241 134 8 chr1 219170074 219170336 -23494017 + LTR33A LTR ERVL 4 298 -225 1439 198 75 58 chr1 219170397 219170826 -23493527 - MLT1D LTR MaLR -69 436 1 1522 204 20 3 chr1 219170938 219171242 -23493111 + MLT1A1 LTR MaLR 57 365 0 427 231 100 74 chr1 219171947 219172176 -23492177 + LTR56 LTR ERV1 1 235 -210 921 139 43 26 chr1 219172177 219172373 -23491980 - THE1C LTR MaLR 0 375 191 678 93 0 0 chr1 219172375 219172461 -23491892 - AluSg/x SINE Alu -16 293 208 405 113 84 56 chr1 219172827 219172937 -23491416 - THE1C LTR MaLR -287 88 1 9212 139 49 8 chr1 219172937 219174453 -23489900 - THE1C-int LTR MaLR 0 1580 3 1866 128 81 39 chr1 219174455 219174815 -23489538 - THE1C LTR MaLR 0 375 1 615 176 87 20 chr1 219174815 219175037 -23489316 + LTR56 LTR ERV1 232 437 0 293 331 59 0 chr1 219175869 219176005 -23488348 + MER34B LTR ERV1 5 148 -417 1322 205 57 59 chr1 219176294 219176554 -23487799 + LTR49-int LTR ERV1 1372 1631 -4700 1465 163 100 26 chr1 219176554 219176824 -23487529 + AluJb SINE Alu 1 290 -22 1322 205 57 59 chr1 219176824 219176858 -23487495 + LTR49-int LTR ERV1 1631 1664 -4667 243 0 0 0 chr1 219176858 219176885 -23487468 + (TG)n Simple_repeat Simple_repeat 2 28 0 1322 205 57 59 chr1 219176885 219177048 -23487305 + LTR49-int LTR ERV1 1664 1829 -4502 * 9603 148 92 65 chr1 219177031 219179512 -23484841 + LTR49-int LTR ERV1 2741 5288 -1043 308 155 70 0 chr1 219179556 219179627 -23484726 + LTR23 LTR ERV1 362 437 0 827 263 125 45 chr1 219180243 219180748 -23483605 - MER77 LTR ERV1 -8 597 160 411 250 51 58 chr1 219180770 219180926 -23483427 - MER77 LTR ERV1 -393 212 58 1670 101 123 23 chr1 219182474 219182979 -23481374 - MER51A LTR ERV1 0 634 1 2116 129 3 3 chr1 219183667 219183976 -23480377 + AluSx SINE Alu 1 309 -3 215 290 106 49 chr1 219184258 219184460 -23479893 - MIR SINE MIR -37 225 17 375 302 60 9 chr1 219185084 219185200 -23479153 + MIR SINE MIR 91 212 -50 240 192 77 39 chr1 219185206 219185310 -23479043 - LTR41 LTR ERVL -6 767 660 180 194 0 0 chr1 219185890 219185921 -23478432 + MIR SINE MIR 206 236 -26 621 112 0 41 chr1 219186747 219186845 -23477508 - FLAM_A SINE Alu -9 133 40 3987 99 2 4 chr1 219186854 219187409 -23476944 + MER41A LTR ERV1 1 554 0 191 250 0 0 chr1 219187448 219187488 -23476865 - MIR SINE MIR 0 262 223 215 276 138 17 chr1 219187526 219187584 -23476769 - MIR SINE MIR -197 65 1 1956 138 0 7 chr1 219187603 219187899 -23476454 - AluSx SINE Alu -10 302 9 1181 208 101 99 chr1 219187989 219188461 -23475892 + MLT1D LTR MaLR 1 476 -29 2146 109 54 0 chr1 219188461 219188755 -23475598 + AluSq SINE Alu 1 310 -3 1181 208 101 99 chr1 219188755 219188778 -23475575 + MLT1D LTR MaLR 476 497 -8 538 296 16 122 chr1 219188920 219189241 -23475112 - L3 LINE CR1 -22 1555 1269 834 318 185 12 chr1 219189259 219189740 -23474613 - L3 LINE CR1 -614 963 400 2516 68 3 0 chr1 219190017 219190324 -23474029 + AluY SINE Alu 2 309 -2 5612 81 0 0 chr1 219190454 219191195 -23473158 + L1PA8 LINE L1 5429 6169 -3 1083 193 116 11 chr1 219191196 219191549 -23472804 - Charlie2a DNA MER1_type -1146 1716 1327 325 253 92 11 chr1 219191564 219191651 -23472702 - L2 LINE L2 -829 2485 2392 372 173 0 67 chr1 219192077 219192152 -23472201 + L2 LINE L2 3243 3312 -1 21 36 0 0 chr1 219192205 219192233 -23472120 + AT_rich Low_complexity Low_complexity 1 28 0 2378 96 0 0 chr1 219193106 219193407 -23470946 - AluSx SINE Alu -11 301 1 319 259 84 46 chr1 219193408 219193671 -23470682 - L1M4 LINE L1 -1300 4846 4574 626 275 70 62 chr1 219193703 219194783 -23469570 - L1MEc LINE L1 -2947 3182 2094 402 362 36 36 chr1 219194784 219195121 -23469232 - L1MEc LINE L1 -4185 2125 1789 307 305 92 25 chr1 219195258 219195497 -23468856 - L1MEc LINE L1 -4729 1581 1327 243 88 0 0 chr1 219195501 219195535 -23468818 + (TG)n Simple_repeat Simple_repeat 2 35 0 264 169 155 42 chr1 219195583 219195654 -23468699 - L1MEc LINE L1 -4863 1256 1178 331 287 17 52 chr1 219195993 219196108 -23468245 - HAL1b LINE L1 -440 908 798 23 33 0 0 chr1 219196128 219196158 -23468195 + AT_rich Low_complexity Low_complexity 1 30 0 281 203 0 0 chr1 219196358 219196427 -23467926 - HAL1b LINE L1 -581 767 699 322 310 99 29 chr1 219196435 219196606 -23467747 - HAL1 LINE L1 -742 1765 1583 232 169 17 17 chr1 219196638 219196697 -23467656 - HAL1b LINE L1 -900 448 390 1665 189 26 41 chr1 219196864 219197216 -23467137 + MER58D DNA MER1_type 2 349 -2071 2130 137 0 0 chr1 219197216 219197515 -23466838 - AluSx SINE Alu -13 299 1 1665 189 26 41 chr1 219197515 219197553 -23466800 + MER58D DNA MER1_type 349 386 0 2407 48 41 3 chr1 219197834 219198128 -23466225 - AluY SINE Alu -6 305 1 248 276 31 79 chr1 219198641 219198768 -23465585 + L3 LINE CR1 1100 1220 -357 1986 89 0 12 chr1 219199319 219199576 -23464777 - AluSg SINE Alu -19 291 38 509 245 109 72 chr1 219199649 219200191 -23464162 + L1M4 LINE L1 4644 5205 -941 21 0 0 0 chr1 219200835 219200856 -23463497 + AT_rich Low_complexity Low_complexity 1 21 0 418 352 101 41 chr1 219202074 219202412 -23461941 + L2 LINE L2 1776 2133 -1181 2113 160 9 0 chr1 219202489 219202833 -23461520 + MER7A DNA MER2_type 2 346 0 559 259 82 32 chr1 219203100 219203407 -23460946 - L2 LINE L2 -457 2857 2454 1155 141 6 0 chr1 219203540 219203710 -23460643 + AluSg/x SINE Alu 123 293 -19 4376 149 39 59 chr1 219203711 219203807 -23460546 + L1MA7 LINE L1 5308 5404 -887 2065 107 0 37 chr1 219203807 219204107 -23460246 + AluY SINE Alu 20 308 -3 4376 149 39 59 chr1 219204107 219205014 -23459339 + L1MA7 LINE L1 5404 6291 0 2756 223 39 15 chr1 219205049 219205905 -23458448 + L1M4 LINE L1 3562 4437 -1709 700 201 13 0 chr1 219205908 219206067 -23458286 + MLT2B1 LTR ERVL 3 163 -357 715 200 38 22 chr1 219206072 219206257 -23458096 + MSTD LTR MaLR 4 191 -205 1378 193 62 14 chr1 219206258 219206533 -23457820 + AluJo SINE Alu 1 288 -24 2064 92 13 3 chr1 219206533 219206836 -23457517 - L1PA10 LINE L1 -485 5683 5378 * 3291 77 11 0 chr1 219206826 219207279 -23457074 + L1PA10 LINE L1 5690 6147 -21 2049 133 0 3 chr1 219207279 219207572 -23456781 + AluSg SINE Alu 13 304 -6 666 217 5 54 chr1 219207608 219207792 -23456561 + MSTD LTR MaLR 222 396 0 645 239 109 80 chr1 219207792 219208030 -23456323 + MLT2B1 LTR ERVL 161 405 -115 384 40 0 0 chr1 219208035 219208085 -23456268 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 3031 210 3 29 chr1 219208103 219209103 -23455250 - L1 LINE L1 -1747 4399 3454 2821 80 42 6 chr1 219209108 219209581 -23454772 - L1M1 LINE L1 -4899 2666 2177 * 5674 168 11 32 chr1 219209578 219211834 -23452519 - L1PB1 LINE L1 -8 6143 3944 3939 193 6 9 chr1 219211835 219212707 -23451646 + L1 LINE L1 2240 3108 -3038 3207 147 14 5 chr1 219212805 219213362 -23450991 - LTR22 LTR ERVK -18 562 1 3465 194 17 6 chr1 219213364 219214182 -23450171 + L1 LINE L1 3112 3938 -2208 1309 25 13 0 chr1 219214193 219214350 -23450003 - L1PA7 LINE L1 0 6154 5996 559 109 453 0 chr1 219214351 219214488 -23449865 - L1M1 LINE L1 -5823 1742 1544 9245 153 27 9 chr1 219214489 219216122 -23448231 - L1M1 LINE L1 -5883 1682 17 5041 129 49 19 chr1 219216135 219216253 -23448100 - L1MA5 LINE L1 -49 6251 6138 1664 199 7 7 chr1 219216253 219216559 -23447794 + AluJo SINE Alu 1 306 -6 5041 129 49 19 chr1 219216559 219217498 -23446855 - L1MA5 LINE L1 -162 6138 5165 521 203 105 14 chr1 219217508 219217651 -23446702 - L1MA10 LINE L1 0 6334 6179 7622 28 0 0 chr1 219217693 219218827 -23445526 - L1PA3 LINE L1 0 6155 5021 * 17869 109 16 6 chr1 219218825 219220710 -23443643 + L1PB2 LINE L1 2509 4441 -1710 225 0 0 0 chr1 219220710 219220735 -23443618 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 17869 109 16 6 chr1 219220735 219222463 -23441890 + L1PB2 LINE L1 4441 6150 -1 374 224 31 0 chr1 219222491 219222589 -23441764 + L1MD3 LINE L1 7894 7994 -1 2027 140 3 0 chr1 219223388 219223680 -23440673 + AluSx SINE Alu 1 293 -19 6668 114 30 20 chr1 219224069 219225129 -23439224 + MER11C LTR ERVK 1 1071 0 790 247 31 28 chr1 219225827 219226082 -23438271 + MLT1H1 LTR MaLR 12 267 -288 300 238 89 10 chr1 219226154 219226255 -23438098 + MLT1G1 LTR MaLR 487 595 0 464 261 18 55 chr1 219226371 219226536 -23437817 - MIR SINE MIR -12 250 92 321 308 100 21 chr1 219226793 219227033 -23437320 - L2 LINE L2 -370 2944 2686 1320 167 50 150 chr1 219228266 219228726 -23435627 - MLT2D LTR ERVL 0 414 1 326 328 45 30 chr1 219229427 219229561 -23434792 + MIR3 SINE MIR 15 150 -58 496 142 11 11 chr1 219229842 219229940 -23434413 + MLT2A2 LTR ERVL 332 408 -45 4523 219 42 57 chr1 219230178 219230367 -23433986 - L1MB2 LINE L1 -8 6557 6367 1606 154 23 99 chr1 219230367 219230762 -23433591 + MLT1A1 LTR MaLR 1 365 0 4523 219 42 57 chr1 219230762 219232150 -23432203 - L1MB2 LINE L1 -198 6367 5020 5297 71 6 1 chr1 219232150 219232838 -23431515 + L1PA10 LINE L1 5467 6157 -11 4523 219 42 57 chr1 219232838 219233007 -23431346 - L1MB2 LINE L1 -1545 5020 4850 1614 176 84 32 chr1 219233009 219233356 -23430997 - MLT1A1 LTR MaLR 0 365 1 1245 143 16 97 chr1 219233956 219234264 -23430089 - MER4D LTR ERV1 -139 764 482 * 1331 113 58 27 chr1 219234261 219234518 -23429835 - MER4D LTR ERV1 -635 268 4 2080 82 20 8 chr1 219234922 219235315 -23429038 + LTR7 LTR ERV1 1 442 -8 3208 146 47 8 chr1 219235323 219236122 -23428231 + HERVH LTR ERV1 1 956 -6757 9631 229 49 24 chr1 219236222 219240113 -23424240 - L1 LINE L1 -1540 4810 1018 1527 191 62 24 chr1 219240113 219240401 -23423952 - AluJb SINE Alu -13 299 1 9631 229 49 24 chr1 219240401 219241371 -23422982 - L1 LINE L1 -5332 1018 153 318 26 0 0 chr1 219241371 219241410 -23422943 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9631 229 49 24 chr1 219241410 219241567 -23422786 - L1 LINE L1 -6197 153 1 387 243 0 0 chr1 219241568 219241671 -23422682 - L1MB2 LINE L1 -2569 3971 3869 247 26 26 0 chr1 219241698 219241736 -23422617 - L1PA3 LINE L1 -5 6150 6112 * 1324 30 0 0 chr1 219241727 219241891 -23422462 + L1PA3 LINE L1 5800 5963 -192 3312 226 67 10 chr1 219241893 219242587 -23421766 - L1MB2 LINE L1 -2658 3882 3087 243 0 0 0 chr1 219242587 219242614 -23421739 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3312 226 67 10 chr1 219242614 219243127 -23421226 - L1MB2 LINE L1 -3453 3087 2605 1106 122 0 6 chr1 219243132 219243319 -23421034 - AluSp SINE Alu 0 315 130 801 79 0 0 chr1 219243422 219243523 -23420830 + AluY SINE Alu 201 301 -10 40349 48 9 1 chr1 219243819 219249926 -23414427 + L1PA4 LINE L1 4 6163 0 961 265 182 33 chr1 219250053 219250509 -23413844 + MLT1H1 LTR MaLR 32 555 0 652 124 0 0 chr1 219250538 219250643 -23413710 - MSTA LTR MaLR -323 105 1 2232 87 0 45 chr1 219250741 219251050 -23413303 - AluY SINE Alu -16 295 1 248 272 4 14 chr1 219251194 219251279 -23413074 + L1MEc LINE L1 1553 1622 -4762 304 176 47 0 chr1 219251299 219251384 -23412969 - L1MB3 LINE L1 -1 6182 6094 14227 190 33 10 chr1 219251390 219256523 -23407830 - L1MA4 LINE L1 -288 6714 1462 7989 167 20 17 chr1 219256528 219259069 -23405284 + L1MA4A LINE L1 3671 6280 -23 3402 83 119 30 chr1 219259093 219259541 -23404812 - Tigger3b DNA MER2_type -2265 763 235 2373 55 0 3 chr1 219259541 219259833 -23404520 + AluY SINE Alu 1 291 -20 3402 83 119 30 chr1 219259833 219260048 -23404305 - Tigger3b DNA MER2_type -2793 235 41 1074 348 113 38 chr1 219260583 219261742 -23402611 - L2 LINE L2 -1772 1542 297 196 91 250 0 chr1 219262056 219262100 -23402253 + L2 LINE L2 3216 3270 -2 728 247 59 41 chr1 219262404 219262623 -23401730 - MIR SINE MIR -38 224 2 24 0 0 0 chr1 219263318 219263342 -23401011 + AT_rich Low_complexity Low_complexity 1 24 0 422 186 0 0 chr1 219263381 219263451 -23400902 + MER69 DNA AcHobo 1 70 -1156 1285 180 27 107 chr1 219263525 219263946 -23400407 + MLT1E LTR MaLR 45 484 -21 2022 127 32 37 chr1 219263946 219264323 -23400030 - THE1C LTR MaLR 0 375 1 1285 180 27 107 chr1 219264323 219264344 -23400009 + MLT1E LTR MaLR 484 505 0 1763 210 86 70 chr1 219264701 219265258 -23399095 + MLT1E1 LTR MaLR 2 567 -87 520 284 97 7 chr1 219265521 219266206 -23398147 - L1MC/D LINE L1 -743 5403 4755 355 151 0 0 chr1 219266306 219266359 -23397994 + MER96 DNA MER1_type? 32 84 -91 240 336 72 0 chr1 219266544 219266669 -23397684 - L2 LINE L2 -1262 2052 1919 32 67 0 0 chr1 219267190 219267250 -23397103 + AT_rich Low_complexity Low_complexity 1 60 0 181 309 86 0 chr1 219267657 219267738 -23396615 - MIR SINE MIR -147 115 28 823 220 40 6 chr1 219267800 219267977 -23396376 + MER5A DNA MER1_type 7 189 0 797 208 125 6 chr1 219267985 219268153 -23396200 - MER58A DNA MER1_type 0 224 37 245 265 239 0 chr1 219268283 219268400 -23395953 + MIR SINE MIR 96 240 -22 23 33 0 0 chr1 219268556 219268586 -23395767 + AT_rich Low_complexity Low_complexity 1 30 0 251 385 37 0 chr1 219269141 219269250 -23395103 + MIR SINE MIR 1 113 -149 709 222 21 7 chr1 219269276 219269420 -23394933 - FRAM SINE Alu -31 145 1 30 69 0 0 chr1 219269939 219269997 -23394356 + AT_rich Low_complexity Low_complexity 1 58 0 2004 162 43 19 chr1 219271847 219272197 -23392156 - Tigger2a DNA MER2_type 0 444 86 7108 98 18 19 chr1 219272197 219273255 -23391098 + MER11C LTR ERVK 1 1057 -14 571 152 0 11 chr1 219273294 219273386 -23390967 - Tigger2a DNA MER2_type -342 92 2 594 271 37 28 chr1 219273422 219273636 -23390717 - L2 LINE L2 -4 3309 3094 228 135 0 0 chr1 219273685 219273722 -23390631 + (CATTA)n Simple_repeat Simple_repeat 4 40 0 24 32 0 0 chr1 219273868 219273899 -23390454 + AT_rich Low_complexity Low_complexity 1 31 0 681 301 199 10 chr1 219273972 219274374 -23389979 - L2 LINE L2 0 3313 2836 28 71 0 0 chr1 219274764 219274820 -23389533 + AT_rich Low_complexity Low_complexity 1 56 0 1219 122 0 0 chr1 219274869 219275041 -23389312 - AluY SINE Alu -7 304 133 2344 78 0 0 chr1 219275041 219275335 -23389018 - AluY SINE Alu -17 294 1 898 95 8 8 chr1 219275464 219275590 -23388763 - AluSp SINE Alu -186 127 2 3885 147 99 123 chr1 219275594 219276649 -23387704 - L1MDa LINE L1 -3930 2610 1461 721 160 0 30 chr1 219276649 219276780 -23387573 - AluSg/x SINE Alu -3 307 181 3885 147 99 123 chr1 219276780 219276961 -23387392 - L1MDa LINE L1 -5079 1461 1277 1982 224 122 6 chr1 219276963 219277437 -23386916 - L1MDa LINE L1 -5985 555 27 350 244 228 8 chr1 219277965 219278088 -23386265 - MER69A DNA AcHobo -15 162 13 219 272 185 0 chr1 219279139 219279231 -23385122 - L3b LINE CR1 -121 1462 1354 186 265 20 0 chr1 219279710 219279759 -23384594 + L2 LINE L2 3263 3312 -1 180 306 126 36 chr1 219280196 219280307 -23384046 - L2 LINE L2 -15 3298 3178 279 371 49 7 chr1 219281302 219281445 -23382908 + MER5A DNA MER1_type 40 188 -1 23 0 0 0 chr1 219281761 219281784 -23382569 + AT_rich Low_complexity Low_complexity 1 23 0 5610 152 19 33 chr1 219282046 219283132 -23381221 + MER11C LTR ERVK 1 1071 0 201 196 0 0 chr1 219283823 219283874 -23380479 + (TA)n Simple_repeat Simple_repeat 1 51 0 320 204 296 10 chr1 219283913 219284011 -23380342 - MER5A DNA MER1_type -3 186 61 4793 78 35 0 chr1 219284014 219284670 -23379683 - L1PA7 LINE L1 0 6154 5476 1077 76 0 0 chr1 219284680 219284812 -23379541 - AluY SINE Alu -179 132 1 29321 115 41 74 chr1 219284812 219290491 -23373862 - L1PA7 LINE L1 -664 5490 5 5051 211 25 7 chr1 219290502 219291653 -23372700 - L1 LINE L1 -3114 3734 2526 3213 85 40 135 chr1 219291653 219292327 -23372026 - LTR66 LTR ERVL 0 610 1 5051 211 25 7 chr1 219292327 219293196 -23371157 - L1 LINE L1 -4322 2526 1675 14372 213 40 18 chr1 219293730 219296290 -23368063 + L1PA16 LINE L1 1357 3859 -2958 2291 120 0 0 chr1 219296290 219296598 -23367755 + AluSx SINE Alu 1 308 -4 14372 213 40 18 chr1 219296598 219299341 -23365012 + L1PA16 LINE L1 3859 6817 0 247 268 71 22 chr1 219299378 219299602 -23364751 - L1MDa LINE L1 -3999 2541 2307 389 206 161 45 chr1 219300129 219300284 -23364069 - MER53 DNA DNA -16 173 1 22 56 0 0 chr1 219300595 219300631 -23363722 + AT_rich Low_complexity Low_complexity 1 36 0 209 291 38 25 chr1 219300726 219300805 -23363548 - MIR SINE MIR -138 124 45 1609 191 22 0 chr1 219301134 219301412 -23362941 + AluJb SINE Alu 1 284 -28 180 0 0 0 chr1 219301412 219301432 -23362921 + (TA)n Simple_repeat Simple_repeat 2 21 0 1435 143 27 9 chr1 219301530 219301647 -23362706 + AluJb SINE Alu 1 114 -198 186 71 0 0 chr1 219301647 219301675 -23362678 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1435 143 27 9 chr1 219301675 219301781 -23362572 + AluJb SINE Alu 114 228 -84 21 0 0 0 chr1 219301785 219301806 -23362547 + AT_rich Low_complexity Low_complexity 1 21 0 197 250 0 0 chr1 219301806 219301842 -23362511 + MIR SINE MIR 111 146 -62 2201 68 0 7 chr1 219302068 219302346 -23362007 - AluY SINE Alu -35 276 1 365 233 45 15 chr1 219302450 219302583 -23361770 + L1ME4a LINE L1 5970 6106 -15 866 261 69 49 chr1 219302690 219303081 -23361272 - L1ME LINE L1 -391 5779 5381 241 118 0 0 chr1 219303089 219303123 -23361230 - MLT2B3 LTR ERVL -8 546 513 189 382 0 0 chr1 219303349 219303417 -23360936 - L2 LINE L2 -1023 2291 2224 338 316 118 0 chr1 219303634 219303770 -23360583 + MIR SINE MIR 40 191 -71 880 141 32 0 chr1 219303979 219304135 -23360218 - L1MB4 LINE L1 -2 6178 6018 444 333 7 14 chr1 219304545 219304686 -23359667 - MER5A DNA MER1_type -2 187 48 797 132 0 83 chr1 219305255 219305399 -23358954 + FLAM_C SINE Alu 2 133 0 303 241 115 0 chr1 219307049 219307136 -23357217 - HAL1 LINE L1 -962 1545 1449 2832 218 73 26 chr1 219307384 219308196 -23356157 - L1MC4a LINE L1 0 7808 6959 289 147 15 15 chr1 219308198 219308266 -23356087 + (TA)n Simple_repeat Simple_repeat 2 69 0 268 268 79 57 chr1 219308496 219308813 -23355540 - L1ME LINE L1 -1082 5064 4741 5442 228 60 45 chr1 219308868 219309442 -23354911 - L1MD3 LINE L1 -743 5403 4839 1830 157 71 0 chr1 219309442 219309767 -23354586 + MER7A DNA MER2_type 1 346 0 5442 228 60 45 chr1 219309767 219310322 -23354031 - L1MD3 LINE L1 -1307 4839 4294 1849 139 7 10 chr1 219310322 219310625 -23353728 + AluJb SINE Alu 1 302 -10 5442 228 60 45 chr1 219310625 219311152 -23353201 - L1MD3 LINE L1 -1852 4294 3776 2258 91 3 16 chr1 219311152 219311460 -23352893 - AluSg1 SINE Alu -4 305 2 5442 228 60 45 chr1 219311460 219311851 -23352502 - L1MD3 LINE L1 -2370 3776 4938 623 37 12 0 chr1 219311851 219311933 -23352420 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 5442 228 60 45 chr1 219311933 219311958 -23352395 - L1MD3 LINE L1 -1207 4939 4916 220 343 143 0 chr1 219311958 219312063 -23352290 + L2 LINE L2 3151 3270 -2 1966 170 9 12 chr1 219312890 219313225 -23351128 - MER1B DNA MER1_type 0 339 6 21 0 0 0 chr1 219313950 219313971 -23350382 + AT_rich Low_complexity Low_complexity 1 21 0 660 247 108 0 chr1 219314087 219314273 -23350080 + L2 LINE L2 3014 3219 -94 329 253 0 48 chr1 219314602 219314685 -23349668 - L2 LINE L2 0 3313 3235 1061 291 82 28 chr1 219314886 219315347 -23349006 - MLT1J LTR MaLR -14 497 12 896 340 168 6 chr1 219315365 219316080 -23348273 - L2 LINE L2 -360 2954 2124 323 242 112 74 chr1 219316844 219317059 -23347294 - L1M4 LINE L1 -3782 2364 2142 598 222 79 0 chr1 219317510 219317636 -23346717 - AluJo SINE Alu -56 256 121 42863 48 6 0 chr1 219317641 219323762 -23340591 - L1PA4 LINE L1 0 6155 6 757 167 42 0 chr1 219323768 219323888 -23340465 - FLAM_A SINE Alu -8 125 1 279 263 124 120 chr1 219324041 219324120 -23340233 + L1MEc LINE L1 46 123 -6273 1515 190 47 17 chr1 219324120 219324420 -23339933 + AluJb SINE Alu 1 309 -3 279 263 124 120 chr1 219324420 219324614 -23339739 + L1MEc LINE L1 123 320 -6076 1136 293 65 25 chr1 219324773 219325266 -23339087 + L1MEc LINE L1 539 1086 -5310 1230 209 90 19 chr1 219325266 219325587 -23338766 + MER2 DNA MER2_type 1 344 0 1136 293 65 25 chr1 219325587 219325986 -23338367 + L1MEc LINE L1 1086 1467 -4929 183 162 0 0 chr1 219325996 219326033 -23338320 + A-rich Low_complexity Low_complexity 1 37 0 2789 222 49 37 chr1 219326093 219327020 -23337333 + L1ME1 LINE L1 5213 6163 -3 365 186 82 10 chr1 219327079 219327176 -23337177 + MIR SINE MIR 105 208 -54 520 155 0 0 chr1 219327236 219327320 -23337033 - L1P LINE L1 -1052 5094 5011 4654 163 57 31 chr1 219327339 219328590 -23335763 - L1MA7 LINE L1 -26 6265 4992 3325 93 8 2 chr1 219328599 219329071 -23335282 - L1PB2 LINE L1 -2 6149 5675 21072 188 54 19 chr1 219329075 219333428 -23330925 - L1PA12 LINE L1 -15 7591 3391 2513 107 38 11 chr1 219333428 219333793 -23330560 - THE1C LTR MaLR 0 375 1 21072 188 54 19 chr1 219333793 219335504 -23328849 - L1PA12 LINE L1 -4215 3391 1741 2216 109 16 0 chr1 219335504 219335807 -23328546 - AluSc SINE Alu -1 308 1 21072 188 54 19 chr1 219335807 219335818 -23328535 - L1PA12 LINE L1 -5865 1741 1732 2791 16 0 0 chr1 219335818 219336123 -23328230 - AluYa5 SINE Alu -6 305 1 21072 188 54 19 chr1 219336123 219336698 -23327655 - L1PA12 LINE L1 -5874 1732 575 243 118 0 0 chr1 219336745 219336779 -23327574 - MLT2B3 LTR ERVL -8 546 513 188 382 0 0 chr1 219337005 219337073 -23327280 - L2 LINE L2 -1023 2291 2224 338 316 118 0 chr1 219337290 219337426 -23326927 + MIR SINE MIR 40 191 -71 877 141 32 0 chr1 219337635 219337791 -23326562 - L1MB4 LINE L1 -2 6178 6018 448 333 7 14 chr1 219338201 219338342 -23326011 - MER5A DNA MER1_type -2 187 48 7391 209 48 39 chr1 219338692 219338755 -23325598 - L1M4 LINE L1 -797 5349 5288 631 198 27 0 chr1 219338755 219338866 -23325487 - FLAM_A SINE Alu -19 114 1 7391 209 48 39 chr1 219338866 219340166 -23324187 - L1M4 LINE L1 -858 5288 3956 1964 155 137 13 chr1 219340166 219340547 -23323806 - MSTA LTR MaLR 0 428 1 7391 209 48 39 chr1 219340547 219341333 -23323020 - L1M4 LINE L1 -2190 3956 3179 3120 220 61 23 chr1 219341335 219342196 -23322157 + L1ME1 LINE L1 5288 6332 -2 428 333 46 23 chr1 219342204 219342378 -23321975 - L2 LINE L2 -18 3295 3118 1215 164 20 30 chr1 219342726 219343031 -23321322 + L1M4 LINE L1 2725 3026 -3120 3198 254 28 9 chr1 219343034 219344026 -23320327 - L1M4 LINE L1 -904 6661 5651 1042 213 9 13 chr1 219344033 219344258 -23320095 + MER58A DNA MER1_type 1 224 0 498 289 41 9 chr1 219344560 219344778 -23319575 - L1MEc LINE L1 -4579 1817 1593 11477 172 25 9 chr1 219344813 219347247 -23317106 - L1PA14 LINE L1 0 7599 5117 207 0 0 0 chr1 219347247 219347270 -23317083 + (TG)n Simple_repeat Simple_repeat 2 24 0 11477 172 25 9 chr1 219347270 219347853 -23316500 - L1PA14 LINE L1 -2482 5117 4545 4284 197 74 26 chr1 219347860 219348373 -23315980 - L1M3c LINE L1 -2721 4385 3898 252 0 0 0 chr1 219348373 219348401 -23315952 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4284 197 74 26 chr1 219348401 219348703 -23315650 - L1M3c LINE L1 -3208 3898 3612 4122 69 28 24 chr1 219348703 219348840 -23315513 - LTR19B LTR ERV1 0 580 445 1954 131 0 3 chr1 219348840 219349151 -23315202 - AluSg SINE Alu 0 310 1 4122 69 28 24 chr1 219349151 219349590 -23314763 - LTR19B LTR ERV1 -135 445 1 4284 197 74 26 chr1 219349590 219350402 -23313951 - L1M3c LINE L1 -3494 3612 2546 2238 84 3 20 chr1 219350402 219350700 -23313653 - AluSp SINE Alu -20 293 1 4284 197 74 26 chr1 219350700 219351103 -23313250 - L1M3c LINE L1 -4560 2546 2164 1282 126 30 38 chr1 219351102 219351364 -23312989 - L1M3 LINE L1 -666 5514 5255 * 755 218 163 35 chr1 219351726 219351983 -23312370 - L2 LINE L2 -1 3312 3023 181 203 101 63 chr1 219351958 219352037 -23312316 + L2 LINE L2 3053 3134 -179 * 1840 10 0 0 chr1 219352413 219352611 -23311742 + AluYa5 SINE Alu 105 302 -9 7200 215 45 41 chr1 219352730 219354171 -23310182 - L1PA14 LINE L1 -4703 2878 1445 2216 109 16 0 chr1 219354171 219354474 -23309879 - AluSc SINE Alu -1 308 1 7200 215 45 41 chr1 219354474 219354485 -23309868 - L1PA14 LINE L1 -6136 1445 1436 2764 20 0 0 chr1 219354485 219354790 -23309563 - AluYa5 SINE Alu -6 305 1 7200 215 45 41 chr1 219354790 219355937 -23308416 - L1PA14 LINE L1 -6145 1436 1 2176 241 128 61 chr1 219355955 219356075 -23308278 - L1M3c LINE L1 -4869 2168 2057 507 198 135 18 chr1 219356075 219356186 -23308167 + FLAM_A SINE Alu 2 125 -8 2176 241 128 61 chr1 219356186 219357065 -23307288 - L1M3c LINE L1 -4980 2057 7 183 196 22 43 chr1 219357069 219357115 -23307238 + MIR SINE MIR 192 236 -26 734 57 4 9 chr1 219357285 219357310 -23307043 + L1PA6 LINE L1 5834 5858 -296 1595 59 5 0 chr1 219357310 219357514 -23306839 - L1PA6 LINE L1 0 6154 5950 734 57 4 9 chr1 219357514 219357605 -23306748 + L1PA6 LINE L1 5858 5947 -207 604 293 119 16 chr1 219357600 219357979 -23306374 - L1M4 LINE L1 -2157 3989 3572 * 266 283 39 38 chr1 219358141 219358266 -23306087 - MIR SINE MIR -70 138 30 314 358 98 5 chr1 219358674 219358867 -23305486 + MIR SINE MIR 8 218 -44 1882 137 158 11 chr1 219359100 219359284 -23305069 + MSTA LTR MaLR 1 157 -271 567 43 0 0 chr1 219359284 219359354 -23304999 + (TC)n Simple_repeat Simple_repeat 1 70 0 1882 137 158 11 chr1 219359354 219359542 -23304811 + MSTA LTR MaLR 157 428 0 2567 56 0 0 chr1 219360125 219360430 -23303923 - AluY SINE Alu -6 305 1 654 233 7 27 chr1 219360434 219360584 -23303769 + Charlie4 DNA MER1_type 1 147 -1814 341 183 0 0 chr1 219360600 219360660 -23303693 + Charlie4 DNA MER1_type 1902 1961 0 699 175 0 0 chr1 219362447 219362561 -23301792 + FLAM_C SINE Alu 2 115 -18 423 0 0 0 chr1 219362629 219362676 -23301677 + (TG)n Simple_repeat Simple_repeat 1 47 0 860 266 22 34 chr1 219363920 219364187 -23300166 + L2 LINE L2 2239 2502 -812 39 0 0 0 chr1 219365292 219365331 -23299022 + AT_rich Low_complexity Low_complexity 1 39 0 288 70 0 0 chr1 219365331 219365374 -23298979 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 29 0 0 62 chr1 219366679 219366706 -23297647 + AT_rich Low_complexity Low_complexity 1 25 -20 2293 79 0 10 chr1 219366706 219366996 -23297357 - AluY SINE Alu -24 287 1 29 0 0 62 chr1 219366996 219367016 -23297337 + AT_rich Low_complexity Low_complexity 25 45 0 201 255 0 0 chr1 219367071 219367118 -23297235 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 307 308 91 42 chr1 219367141 219367550 -23296803 + L1M4 LINE L1 2662 3090 -3056 324 0 0 0 chr1 219367553 219367589 -23296764 + (CA)n Simple_repeat Simple_repeat 1 36 0 3893 245 67 21 chr1 219367590 219367639 -23296714 + L1ME1 LINE L1 35 80 -6316 1659 193 80 19 chr1 219367639 219368012 -23296341 - MSTD LTR MaLR 0 396 1 3893 245 67 21 chr1 219368012 219369223 -23295130 + L1ME1 LINE L1 80 1353 -5043 5831 220 72 55 chr1 219369276 219369716 -23294637 + L1ME1 LINE L1 3327 3758 -2457 2425 86 7 0 chr1 219369716 219370020 -23294333 + AluSq SINE Alu 1 306 -7 5831 220 72 55 chr1 219370020 219371659 -23292694 + L1ME1 LINE L1 3758 5440 -775 16598 181 36 15 chr1 219371659 219376215 -23288138 + L1PA15 LINE L1 1499 6163 -2 1254 225 16 31 chr1 219376211 219376531 -23287822 + L1ME1 LINE L1 5880 6179 -68 * 1807 140 21 0 chr1 219376531 219376689 -23287664 - AluSx SINE Alu -21 291 123 198 0 0 0 chr1 219376689 219376711 -23287642 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1807 140 21 0 chr1 219376711 219376837 -23287516 - AluSx SINE Alu -189 123 1 1254 225 16 31 chr1 219376837 219376904 -23287449 + L1ME1 LINE L1 6179 6245 -2 382 247 80 25 chr1 219376926 219377088 -23287265 + HAL1 LINE L1 2334 2504 -3 235 347 16 0 chr1 219377112 219377236 -23287117 + L1MC/D LINE L1 5786 5911 -1897 2167 116 0 0 chr1 219378047 219378340 -23286013 + AluSx SINE Alu 1 293 -19 1234 221 34 37 chr1 219378472 219378770 -23285583 + AluJb SINE Alu 1 297 -5 998 164 30 82 chr1 219379936 219380167 -23284186 + MER20 DNA MER1_type 1 219 0 208 217 233 16 chr1 219380816 219380945 -23283408 - L3 LINE CR1 -199 1378 1222 3917 138 25 9 chr1 219381775 219382450 -23281903 - L1MA3 LINE L1 0 7724 7039 38094 39 5 0 chr1 219382450 219387929 -23276424 - L1PA4 LINE L1 -1 6154 649 1259 170 5 5 chr1 219388002 219388220 -23276133 - LTR9B LTR ERV1 0 644 427 1943 82 0 0 chr1 219388221 219388476 -23275877 - L1M1 LINE L1 -675 5630 5376 2171 154 39 38 chr1 219388476 219389024 -23275329 + MLT2A2 LTR ERVL 1 554 0 21621 160 43 12 chr1 219389026 219395613 -23268740 - L1MA3 LINE L1 -768 6797 10 924 136 14 0 chr1 219395693 219395840 -23268513 - L1M1 LINE L1 -5775 1790 1642 484 345 100 37 chr1 219396328 219396941 -23267412 - L2 LINE L2 -1 3271 2621 237 359 215 8 chr1 219397054 219397436 -23266917 - L2 LINE L2 -961 2353 1893 29 47 0 0 chr1 219397894 219397937 -23266416 + AT_rich Low_complexity Low_complexity 1 43 0 2172 130 0 13 chr1 219399152 219399467 -23264886 + AluSx SINE Alu 1 311 -1 560 234 59 22 chr1 219401151 219401373 -23262980 + MER112 DNA MER1_type 31 260 0 900 299 17 28 chr1 219401396 219401687 -23262666 - L3 LINE CR1 -310 1267 980 2108 122 0 0 chr1 219401814 219402135 -23262218 + AluSc SINE Alu 1 321 0 3216 89 13 0 chr1 219402150 219402600 -23261753 + L1PA13 LINE L1 5708 6163 0 865 257 87 27 chr1 219403999 219404106 -23260247 - HAL1b LINE L1 -85 1263 1164 333 0 0 0 chr1 219404106 219404143 -23260210 + (TG)n Simple_repeat Simple_repeat 2 38 0 865 257 87 27 chr1 219404143 219404439 -23259914 - HAL1b LINE L1 -184 1164 836 253 311 8 49 chr1 219404744 219404866 -23259487 - MER5A DNA MER1_type -18 171 55 1521 116 14 0 chr1 219405143 219405359 -23258994 - AluSp SINE Alu -11 302 84 1082 62 0 0 chr1 219405359 219405487 -23258866 - AluSp SINE Alu -185 128 1 969 151 13 0 chr1 219405557 219405709 -23258644 + AluSg/x SINE Alu 134 287 -23 180 77 0 0 chr1 219405712 219405738 -23258615 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 547 211 82 86 chr1 219406650 219406768 -23257585 - L2 LINE L2 -517 2797 2680 638 138 101 0 chr1 219406768 219406877 -23257476 - L1PB3 LINE L1 -7 6147 6028 547 211 82 86 chr1 219406877 219407014 -23257339 - L2 LINE L2 -634 2680 2543 252 384 16 2 chr1 219407015 219407159 -23257194 - MIR SINE MIR -65 143 22 2042 96 0 46 chr1 219407509 219407812 -23256541 - AluSq SINE Alu -24 289 1 1815 48 20 4 chr1 219408855 219409103 -23255250 + L1MA2 LINE L1 6053 6304 0 22 35 0 0 chr1 219409103 219409132 -23255221 + AT_rich Low_complexity Low_complexity 1 29 0 313 295 11 21 chr1 219409995 219410090 -23254263 - MIR SINE MIR -105 157 64 821 285 104 6 chr1 219410094 219410596 -23253757 - L1M4 LINE L1 -3388 2758 2208 197 194 0 32 chr1 219410689 219410751 -23253602 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 249 149 60 15 chr1 219410758 219410825 -23253528 + L1MCa LINE L1 1995 2064 -4362 246 208 0 0 chr1 219410825 219410878 -23253475 + (TA)n Simple_repeat Simple_repeat 2 54 0 251 239 22 43 chr1 219410878 219410970 -23253383 + L1MC4 LINE L1 6614 6703 -1339 200 222 0 0 chr1 219410974 219411010 -23253343 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 238 333 0 0 chr1 219411010 219411100 -23253253 + L1MC4 LINE L1 6614 6703 -1339 229 253 0 63 chr1 219411086 219411181 -23253172 - L1MC4 LINE L1 -1339 6703 6615 * 235 214 0 82 chr1 219411184 219411282 -23253071 - L1MC4 LINE L1 -1339 6703 6614 * 252 250 23 23 chr1 219411202 219411290 -23253063 + L1MC4 LINE L1 6614 6701 -1341 324 289 23 12 chr1 219411326 219411499 -23252854 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 325 348 17 0 chr1 219411503 219411618 -23252735 + (TA)n Simple_repeat Simple_repeat 2 118 0 261 140 0 40 chr1 219411618 219411668 -23252685 - MER4-int LTR ERV1 -5436 1162 1115 200 250 0 0 chr1 219411672 219411712 -23252641 + (TA)n Simple_repeat Simple_repeat 2 41 0 231 233 35 0 chr1 219411712 219411798 -23252555 + L1MC4 LINE L1 6614 6702 -1340 249 108 0 0 chr1 219411889 219411926 -23252427 + (CA)n Simple_repeat Simple_repeat 2 38 0 854 188 0 0 chr1 219411942 219412080 -23252273 - AluJb SINE Alu -30 282 145 995 196 9 36 chr1 219412298 219412518 -23251835 - AluJo SINE Alu -14 298 85 806 160 0 0 chr1 219412522 219412653 -23251700 - FLAM_C SINE Alu -1 132 2 290 240 0 0 chr1 219412654 219412729 -23251624 - L1MEc LINE L1 -4096 2300 2226 1661 160 7 39 chr1 219413791 219414098 -23250255 - AluJo SINE Alu -15 297 1 216 97 0 0 chr1 219414153 219414184 -23250169 + (CAA)n Simple_repeat Simple_repeat 1 31 0 326 324 7 0 chr1 219414252 219414358 -23249995 - MIR SINE MIR -85 123 14 24 32 0 0 chr1 219414564 219414595 -23249758 + AT_rich Low_complexity Low_complexity 1 31 0 505 30 15 0 chr1 219414766 219414832 -23249521 + MER41A LTR ERV1 400 466 -88 7286 120 14 4 chr1 219415855 219417257 -23247096 - L1MA2 LINE L1 0 6304 4885 180 341 74 67 chr1 219417258 219417542 -23246811 + L2 LINE L2 2690 2975 -339 2272 171 23 7 chr1 219418522 219418962 -23245391 - L1M2 LINE L1 -4415 2434 1988 1903 236 89 3 chr1 219418985 219419350 -23245003 - L1M4 LINE L1 -2905 3241 2909 2445 53 0 13 chr1 219419350 219419650 -23244703 + AluY SINE Alu 1 296 -15 1903 236 89 3 chr1 219419650 219419903 -23244450 - L1M4 LINE L1 -3237 2909 2570 630 267 148 18 chr1 219420511 219420728 -23243625 + MIR SINE MIR 17 261 -1 399 200 30 10 chr1 219420937 219421037 -23243316 - Charlie8 DNA MER1_type -2229 188 87 2358 89 0 0 chr1 219421311 219421604 -23242749 - AluSq SINE Alu -16 297 5 201 194 56 174 chr1 219421752 219421896 -23242457 - MIR SINE MIR 0 262 136 2012 132 3 0 chr1 219422695 219422990 -23241363 + AluSx SINE Alu 1 296 -16 2095 98 44 0 chr1 219423050 219423347 -23241006 + AluSg SINE Alu 1 310 0 2170 113 7 0 chr1 219424421 219424723 -23239630 + AluSx SINE Alu 1 304 -8 1216 152 8 37 chr1 219425369 219425612 -23238741 - L1PA13 LINE L1 -2 6161 5926 685 243 182 0 chr1 219426469 219426683 -23237670 - MIR SINE MIR -6 256 4 872 309 16 0 chr1 219426816 219427059 -23237294 + L2 LINE L2 2810 3056 -257 346 225 25 12 chr1 219427059 219427139 -23237214 + L2 LINE L2 3233 3313 0 526 255 87 0 chr1 219427790 219427951 -23236402 + MER104 DNA MER2_type 3 177 -3 2616 251 85 7 chr1 219428540 219429236 -23235117 + MER69 DNA AcHobo 5 754 -1772 1920 214 71 5 chr1 219429249 219429995 -23234358 + MER69 DNA AcHobo 1472 2300 -226 31212 120 11 44 chr1 219430000 219436350 -23228003 + L1PA7 LINE L1 8 6141 -13 693 189 137 0 chr1 219436350 219436540 -23227813 + MER69 DNA AcHobo 2264 2479 -47 1706 278 19 44 chr1 219436571 219436609 -23227744 + Charlie7 DNA MER1_type 31 68 -2544 264 77 0 0 chr1 219436609 219436648 -23227705 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1706 278 19 44 chr1 219436648 219436729 -23227624 + Charlie7 DNA MER1_type 68 150 -2462 291 113 0 0 chr1 219436729 219436782 -23227571 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 1235 52 0 7 chr1 219436782 219436926 -23227427 - L1PA3 LINE L1 -10 6145 6001 2011 121 0 0 chr1 219436926 219437199 -23227154 - AluSc SINE Alu -36 273 1 1706 278 19 44 chr1 219437207 219437761 -23226592 + Charlie7 DNA MER1_type 148 689 -1923 206 340 107 19 chr1 219438166 219438269 -23226084 + L2 LINE L2 3152 3263 -9 328 356 41 14 chr1 219439055 219439201 -23225152 - MIR SINE MIR -110 152 3 744 203 114 42 chr1 219439388 219439625 -23224728 + L1M4 LINE L1 3739 3992 -2154 320 253 39 84 chr1 219440133 219440311 -23224042 + HERVL40 LTR ERVL 4480 4649 -881 1825 261 92 26 chr1 219441035 219441537 -23222816 + REP3 LTR ERV 1 535 -27 1944 149 7 3 chr1 219442232 219442533 -23221820 - AluJo SINE Alu -8 304 3 22 0 0 0 chr1 219443704 219443726 -23220627 + AT_rich Low_complexity Low_complexity 1 22 0 207 78 94 0 chr1 219444658 219444722 -23219631 + (TA)n Simple_repeat Simple_repeat 1 70 0 1351 190 77 25 chr1 219446098 219446372 -23217981 - AluJo SINE Alu -21 291 4 9228 229 37 44 chr1 219447680 219450452 -23213901 + L1MA5A LINE L1 15 2805 -3983 802 127 0 0 chr1 219450452 219450570 -23213783 + FLAM_C SINE Alu 1 118 -15 9228 229 37 44 chr1 219450570 219451974 -23212379 + L1MA5A LINE L1 2805 4199 -2589 2135 121 0 10 chr1 219451974 219452271 -23212082 - AluSx SINE Alu -16 296 3 9228 229 37 44 chr1 219452271 219452976 -23211377 + L1MA5A LINE L1 4199 4907 -1881 5907 98 12 0 chr1 219452989 219453825 -23210528 - L1PA13 LINE L1 -11 6152 5307 5517 142 22 39 chr1 219453828 219455184 -23209169 + L1MA5A LINE L1 4898 6245 -694 1243 162 35 0 chr1 219455188 219455386 -23208967 + AluJb SINE Alu 87 291 -21 3840 133 46 10 chr1 219455387 219456062 -23208291 + L1MA5A LINE L1 6236 6934 -5 519 194 0 0 chr1 219456117 219456225 -23208128 + (TA)n Simple_repeat Simple_repeat 2 109 0 27 49 0 0 chr1 219457067 219457108 -23207245 + AT_rich Low_complexity Low_complexity 1 41 0 3597 213 53 1 chr1 219457347 219458170 -23206183 - L1MB7 LINE L1 -1 6183 5318 * 6247 178 127 7 chr1 219458165 219458819 -23205534 - L1MC3 LINE L1 0 8021 7447 195 100 0 0 chr1 219458819 219458849 -23205504 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 6247 178 127 7 chr1 219458849 219460341 -23204012 - L1MC3 LINE L1 -574 7447 5613 2146 176 31 13 chr1 219460363 219460817 -23203536 - L1MA5 LINE L1 0 6300 5839 515 159 140 0 chr1 219460817 219460924 -23203429 + L1MA5 LINE L1 5699 5820 -480 1918 157 3 3 chr1 219460938 219461237 -23203116 - AluJo SINE Alu -13 299 1 2110 127 13 0 chr1 219461245 219461545 -23202808 - AluSx SINE Alu -8 304 1 6617 237 45 20 chr1 219461570 219463747 -23200606 - L1MC3 LINE L1 -1899 4483 2260 518 300 50 0 chr1 219463777 219464017 -23200336 + L1M4 LINE L1 5148 5399 -747 955 299 56 0 chr1 219464069 219464357 -23199996 + LTR16C LTR ERVL 188 491 0 1205 171 18 29 chr1 219464681 219464962 -23199391 - L1MA9 LINE L1 -2 6310 6033 286 299 62 40 chr1 219464997 219465221 -23199132 - L1MC3 LINE L1 -4352 2211 1983 1904 208 27 58 chr1 219465229 219465747 -23198606 + MLT1D LTR MaLR 1 626 0 1837 254 80 56 chr1 219465753 219466187 -23198166 - L1MC3 LINE L1 -4554 1830 1408 2426 94 0 0 chr1 219466187 219466494 -23197859 - AluY SINE Alu -4 307 1 1837 254 80 56 chr1 219466494 219467085 -23197268 - L1MC3 LINE L1 -4976 1408 780 464 208 227 10 chr1 219467131 219467338 -23197015 - Zaphod DNA AcHobo -1699 2332 2081 2088 106 0 34 chr1 219467506 219467839 -23196514 + AluSq SINE Alu 1 323 0 538 300 47 40 chr1 219468147 219468560 -23195793 - L2 LINE L2 -78 3235 2400 33 0 0 0 chr1 219468817 219468850 -23195503 + AT_rich Low_complexity Low_complexity 1 33 0 204 231 0 0 chr1 219469671 219469723 -23194630 + C-rich Low_complexity Low_complexity 1 52 0 677 101 8 31 chr1 219469735 219469864 -23194489 + (TTCC)n Simple_repeat Simple_repeat 1 126 0 1678 158 33 23 chr1 219469864 219470051 -23194302 - AluJb SINE Alu -6 306 113 192 77 0 0 chr1 219470051 219470077 -23194276 + (TG)n Simple_repeat Simple_repeat 1 26 0 1678 158 33 23 chr1 219470077 219470192 -23194161 - AluJb SINE Alu -199 113 1 243 125 0 0 chr1 219470562 219470602 -23193751 + (TC)n Simple_repeat Simple_repeat 1 40 0 211 224 0 0 chr1 219470640 219470689 -23193664 + (TA)n Simple_repeat Simple_repeat 1 49 0 496 192 27 75 chr1 219471012 219471158 -23193195 - Charlie4 DNA MER1_type -5 1956 1818 740 176 19 98 chr1 219471690 219471895 -23192458 + MIR SINE MIR 47 235 -27 1947 104 0 37 chr1 219472228 219472313 -23192040 + L1P4 LINE L1 5415 5502 -661 2451 24 40 7 chr1 219472313 219472609 -23191744 + AluY SINE Alu 1 306 -5 1947 104 0 37 chr1 219472609 219472822 -23191531 + L1P4 LINE L1 5502 5702 -461 2221 42 7 31 chr1 219473349 219473656 -23190697 - AluY SINE Alu 0 300 1 24 0 0 0 chr1 219473656 219473680 -23190673 + AT_rich Low_complexity Low_complexity 1 24 0 373 302 0 0 chr1 219475637 219475723 -23188630 + MER5A DNA MER1_type 57 142 -47 12579 39 1 0 chr1 219476323 219478626 -23185727 - L1PA5 LINE L1 -4 6150 3841 319 217 0 29 chr1 219479045 219479114 -23185239 - MIR3 SINE MIR -42 166 100 2426 67 14 0 chr1 219479216 219479513 -23184840 + AluY SINE Alu 1 301 -10 246 226 0 0 chr1 219480505 219480558 -23183795 - L2 LINE L2 -5 3308 3256 24 0 0 0 chr1 219480865 219480889 -23183464 + AT_rich Low_complexity Low_complexity 1 24 0 245 299 66 42 chr1 219483168 219483335 -23181018 - L2 LINE L2 -684 2630 2460 567 275 66 12 chr1 219483370 219483537 -23180816 - L2 LINE L2 -829 2485 2310 444 147 0 0 chr1 219483539 219483614 -23180739 + (TA)n Simple_repeat Simple_repeat 2 76 0 3713 189 19 8 chr1 219483865 219484665 -23179688 + L1 LINE L1 4552 5360 -786 255 175 0 0 chr1 219484855 219484895 -23179458 - 5S rRNA rRNA -79 42 3 7142 157 33 14 chr1 219484962 219486351 -23178002 + L1MA7 LINE L1 3443 4858 -1288 727 136 0 124 chr1 219486357 219486438 -23177915 + L1MA7 LINE L1 5684 5733 -558 2295 107 0 3 chr1 219486438 219486737 -23177616 - AluSx SINE Alu -14 298 1 727 136 0 124 chr1 219486737 219486832 -23177521 + L1MA7 LINE L1 5733 5838 -453 3001 112 28 10 chr1 219486872 219487371 -23176982 + L1MA7 LINE L1 5784 6291 0 235 264 33 44 chr1 219488477 219488568 -23175785 + L1ME LINE L1 5469 5558 -563 222 338 15 0 chr1 219488595 219488663 -23175690 + MIR3 SINE MIR 125 193 -15 2466 65 13 0 chr1 219488971 219489278 -23175075 + AluY SINE Alu 1 311 0 319 203 21 0 chr1 219489804 219489902 -23174451 - L1P LINE L1 -3104 3042 2942 383 312 63 46 chr1 219490041 219490326 -23174027 - L1M4 LINE L1 -1458 4688 4399 28 0 0 0 chr1 219490344 219490372 -23173981 + AT_rich Low_complexity Low_complexity 1 28 0 393 309 65 38 chr1 219490509 219490806 -23173547 - L1M4 LINE L1 -1740 4406 4104 359 262 148 37 chr1 219490805 219491269 -23173084 - L1MEc LINE L1 -5143 1062 601 * 764 289 128 40 chr1 219492490 219492960 -23171393 - MLT1J LTR MaLR 0 511 1 225 148 19 0 chr1 219494872 219494926 -23169427 - L1ME4a LINE L1 -5 6116 6062 969 191 99 69 chr1 219494981 219495334 -23169019 - L1ME4a LINE L1 -789 5357 5017 2250 119 0 0 chr1 219495334 219495628 -23168725 + AluSq SINE Alu 3 296 -17 969 191 99 69 chr1 219495628 219495757 -23168596 - L1ME4a LINE L1 -1129 5017 4893 562 69 0 0 chr1 219495757 219495829 -23168524 - MLT1B LTR MaLR -2 388 317 301 189 0 0 chr1 219495840 219495893 -23168460 - MLT1B LTR MaLR -205 185 133 * 1430 197 35 53 chr1 219495888 219496263 -23168090 + MER74A LTR ERVL 161 528 -30 628 275 74 0 chr1 219496288 219496437 -23167916 - MER58C DNA MER1_type -55 160 1 2886 204 54 27 chr1 219496461 219497214 -23167139 + L1MB7 LINE L1 5398 6171 -13 421 318 8 0 chr1 219497210 219497336 -23167017 - L1MEc LINE L1 -6088 308 182 * 1375 325 41 7 chr1 219497493 219498050 -23166303 - ERVL LTR ERVL -3275 2489 1914 599 196 20 9 chr1 219498100 219498238 -23166115 - L1MC3 LINE L1 -1059 6726 6613 386 331 60 51 chr1 219498483 219498783 -23165570 - L1MEc LINE L1 -4583 1813 1506 2248 65 25 0 chr1 219498783 219499058 -23165295 - AluY SINE Alu -27 284 3 386 331 60 51 chr1 219499058 219499171 -23165182 - L1MEc LINE L1 -4890 1506 1396 7363 93 3 32 chr1 219499403 219501318 -23163035 - L1PA8 LINE L1 -5 6167 4281 11763 102 8 5 chr1 219501318 219503080 -23161273 + L1PA8 LINE L1 2511 4277 -1869 6870 110 59 29 chr1 219503826 219504559 -23159794 + Tigger3b DNA MER2_type 1 785 -2243 1702 152 13 46 chr1 219504559 219504861 -23159492 - AluJo SINE Alu -20 292 1 6870 110 59 29 chr1 219504861 219505322 -23159031 + Tigger3b DNA MER2_type 785 1231 0 21 71 0 0 chr1 219505596 219505638 -23158715 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr1 219505926 219505949 -23158404 + AT_rich Low_complexity Low_complexity 1 23 0 29 104 0 0 chr1 219506498 219506604 -23157749 + AT_rich Low_complexity Low_complexity 1 106 0 20634 176 34 44 chr1 219507169 219512313 -23152040 + L1PA11 LINE L1 7 6159 -1453 2083 89 0 0 chr1 219512313 219512572 -23151781 + AluY SINE Alu 1 259 -52 20634 176 34 44 chr1 219512572 219513998 -23150355 + L1PA11 LINE L1 6159 7598 -14 514 327 104 18 chr1 219514025 219514392 -23149961 - L2 LINE L2 -195 3077 2680 405 218 97 107 chr1 219514392 219514500 -23149853 + L1ME3A LINE L1 5666 5774 -396 180 0 0 0 chr1 219514500 219514520 -23149833 + (TG)n Simple_repeat Simple_repeat 2 21 0 405 218 97 107 chr1 219514520 219514700 -23149653 + L1ME3A LINE L1 5774 5951 -219 341 335 161 7 chr1 219514934 219515089 -23149264 - L2 LINE L2 -624 2690 2512 279 295 315 7 chr1 219515218 219515367 -23148986 - MIR SINE MIR -2 260 66 22 56 0 0 chr1 219516282 219516318 -23148035 + AT_rich Low_complexity Low_complexity 1 36 0 319 229 0 0 chr1 219516334 219516404 -23147949 - L1ME4a LINE L1 -74 6047 5978 28 61 0 0 chr1 219516409 219516458 -23147895 + AT_rich Low_complexity Low_complexity 1 49 0 521 237 72 56 chr1 219516554 219516803 -23147550 - L1ME4a LINE L1 -336 5785 5533 5201 61 3 0 chr1 219516873 219517529 -23146824 - L1PA7 LINE L1 -1 6153 5496 1858 196 95 21 chr1 219517529 219518003 -23146350 - LTR22 LTR ERVK 0 509 1 24182 90 11 2 chr1 219518003 219519209 -23145144 - HERVK22 LTR ERVK 0 6837 5644 5071 159 20 40 chr1 219519209 219520198 -23144155 + LTR5 LTR ERVK 1 969 0 24182 90 11 2 chr1 219520198 219523474 -23140879 - HERVK22 LTR ERVK -1193 5644 2314 4006 103 2 8 chr1 219523457 219524046 -23140307 - HERVK22 LTR ERVK -6043 794 210 1254 98 226 13 chr1 219524046 219524281 -23140072 + LTR12 LTR ERV1 1 285 -429 246 226 95 0 chr1 219524281 219524365 -23139988 + LTR30 LTR ERV1 552 643 -79 696 133 0 0 chr1 219524366 219524471 -23139882 + LTR12 LTR ERV1 481 585 -129 * 1284 98 54 0 chr1 219524465 219524669 -23139684 - HERVK22 LTR ERVK -6622 215 1 1782 213 102 19 chr1 219524669 219525139 -23139214 - LTR22 LTR ERVK 0 509 1 21997 102 12 7 chr1 219525139 219528771 -23135582 - L1P3 LINE L1 -653 5816 2173 37870 74 8 2 chr1 219528777 219534921 -23129432 + L1PA5 LINE L1 4 6187 0 11481 113 11 40 chr1 219534921 219537063 -23127290 - L1P3 LINE L1 -4280 2181 37 1475 199 44 38 chr1 219537283 219538053 -23126300 + L1MCc LINE L1 834 1746 -4887 308 337 39 34 chr1 219538069 219538247 -23126106 - HAL1 LINE L1 -1115 1392 1214 1942 155 22 17 chr1 219541278 219541640 -23122713 - MLT1A1 LTR MaLR -1 364 1 226 290 215 9 chr1 219542026 219542133 -23122220 + L2 LINE L2 3136 3264 -8 267 317 55 14 chr1 219542824 219542969 -23121384 - L1ME4a LINE L1 -2 6119 5969 488 304 22 54 chr1 219542980 219543164 -23121189 - MER5A DNA MER1_type -5 184 7 4639 177 92 13 chr1 219543561 219544619 -23119734 + L1PB1 LINE L1 2 1142 -5721 2356 109 0 0 chr1 219544619 219544932 -23119421 + AluSq SINE Alu 1 313 0 13897 185 18 17 chr1 219544965 219548278 -23116075 + L1PB1 LINE L1 1311 4670 -2220 2275 98 3 3 chr1 219548278 219548573 -23115780 + AluY SINE Alu 1 295 -16 13897 185 18 17 chr1 219548573 219550795 -23113558 + L1PB1 LINE L1 4670 6890 0 239 286 131 45 chr1 219550795 219551040 -23113313 - L1ME LINE L1 -477 5644 5379 5575 161 39 12 chr1 219551125 219553204 -23111149 - L1PA15 LINE L1 -1 6164 4030 659 244 0 0 chr1 219553254 219553385 -23110968 - FLAM_A SINE Alu -2 131 1 2630 228 56 25 chr1 219554840 219555877 -23108476 + L1MB5 LINE L1 979 2141 -4243 1344 176 18 76 chr1 219555897 219556226 -23108127 - MLT1B LTR MaLR -7 383 74 992 229 152 0 chr1 219556228 219556459 -23107894 + Tigger7 DNA MER2_type 3 268 -2219 1605 117 11 26 chr1 219556462 219556735 -23107618 + Tigger7 DNA MER2_type 2313 2581 -6 345 129 0 71 chr1 219556741 219556811 -23107542 - MLT1B LTR MaLR -325 65 1 845 204 66 42 chr1 219556813 219557150 -23107203 + L1MB5 LINE L1 2167 2519 -3863 1920 219 57 46 chr1 219557165 219557864 -23106489 + L1MB5 LINE L1 3623 4329 -2053 1083 240 45 6 chr1 219557864 219558197 -23106156 + L1MB5 LINE L1 4636 4981 -1401 1631 150 59 26 chr1 219558197 219558536 -23105817 - Tigger7 DNA MER2_type 0 2487 2138 657 188 0 8 chr1 219558534 219558651 -23105702 - Tigger7 DNA MER2_type -616 117 2 * 850 196 17 34 chr1 219558652 219558887 -23105466 + L1MB5 LINE L1 4980 5210 -1172 * 1974 176 112 0 chr1 219558882 219559396 -23104957 + L1MB5 LINE L1 5420 5989 -431 1025 237 4 0 chr1 219559410 219559638 -23104715 + L1MB5 LINE L1 6170 6398 -12 361 306 86 52 chr1 219559908 219560140 -23104213 + L1ME4a LINE L1 5695 5934 -187 246 281 62 10 chr1 219560313 219560409 -23103944 + MIR SINE MIR 162 262 0 619 319 145 31 chr1 219560677 219561347 -23103006 + L1M4 LINE L1 3769 4514 -1632 4648 222 6 52 chr1 219561581 219562149 -23102204 - L1 LINE L1 -1734 5831 5239 1958 169 0 0 chr1 219562149 219562456 -23101897 - AluSx SINE Alu -5 307 1 4648 222 6 52 chr1 219562456 219563401 -23100952 - L1 LINE L1 -2326 5239 4387 2279 287 55 31 chr1 219563441 219564393 -23099960 - L1 LINE L1 -6579 986 13 1909 145 3 39 chr1 219564579 219564889 -23099464 - AluSx SINE Alu -13 299 1 4869 156 6 27 chr1 219564936 219565961 -23098392 + L1PA16 LINE L1 4806 6150 -16 4366 212 35 11 chr1 219565972 219566053 -23098300 + L1M1 LINE L1 2340 2418 -5147 2079 188 56 2 chr1 219566053 219566463 -23097890 + MSTB1 LTR MaLR 1 432 0 4366 212 35 11 chr1 219566463 219567610 -23096743 + L1M1 LINE L1 2418 3597 -3968 2045 129 63 20 chr1 219567654 219568003 -23096350 - THE1B LTR MaLR 0 364 1 1676 78 0 4 chr1 219568003 219568234 -23096119 - THE1B-int LTR MaLR 0 1580 1351 2369 102 11 6 chr1 219568234 219568587 -23095766 + THE1A LTR MaLR 1 355 0 9368 88 35 1 chr1 219568588 219569897 -23094456 - THE1B-int LTR MaLR -226 1354 1 1932 113 104 24 chr1 219569897 219570234 -23094119 - THE1B LTR MaLR 0 364 1 6701 191 60 79 chr1 219570235 219570740 -23093613 + L1M1 LINE L1 3946 4459 -3106 1598 99 14 0 chr1 219570740 219570953 -23093400 + AluSg SINE Alu 1 216 -94 241 157 176 0 chr1 219570953 219571004 -23093349 - THE1B LTR MaLR -169 195 136 514 136 0 0 chr1 219571011 219571092 -23093261 + AluSg SINE Alu 222 302 -10 6701 191 60 79 chr1 219571092 219572507 -23091846 + L1M1 LINE L1 4464 5967 -1598 37728 45 4 1 chr1 219572518 219578002 -23086351 - L1PA4 LINE L1 -3 6152 649 1259 170 5 5 chr1 219578075 219578293 -23086060 - LTR9B LTR ERV1 0 644 427 1943 82 0 0 chr1 219578294 219578549 -23085804 - L1M1 LINE L1 -675 5630 5376 2177 152 37 35 chr1 219578549 219579099 -23085254 + MLT2A2 LTR ERVL 1 554 0 21621 160 43 12 chr1 219579101 219585688 -23078665 - L1 LINE L1 -768 6797 10 924 136 14 0 chr1 219585768 219585915 -23078438 - L1M1 LINE L1 -5775 1790 1642 484 345 100 37 chr1 219586403 219587016 -23077337 - L2 LINE L2 -1 3271 2621 237 359 215 8 chr1 219587129 219587511 -23076842 - L2 LINE L2 -961 2353 1893 29 47 0 0 chr1 219587969 219588012 -23076341 + AT_rich Low_complexity Low_complexity 1 43 0 2199 127 0 13 chr1 219589228 219589543 -23074810 + AluSx SINE Alu 1 311 -1 216 189 0 0 chr1 219589958 219589995 -23074358 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 475 211 70 39 chr1 219590478 219590600 -23073753 + LTR68 LTR ERV1 3 133 -607 3276 139 25 74 chr1 219590600 219591327 -23073026 - LTR8 LTR ERV1 0 691 1 475 211 70 39 chr1 219591327 219591360 -23072993 + LTR68 LTR ERV1 133 163 -577 300 321 103 21 chr1 219591441 219591731 -23072622 - L1M4 LINE L1 -1881 4265 3952 2333 141 34 32 chr1 219591749 219592223 -23072130 - L1MA7 LINE L1 0 6291 5817 2027 85 0 0 chr1 219592223 219592524 -23071829 + AluSx SINE Alu 38 338 0 421 261 17 17 chr1 219592625 219592740 -23071613 - HsTC2 DNA Tc2 -1776 122 8 324 253 75 75 chr1 219592742 219592888 -23071465 - HAL1 LINE L1 -1537 970 825 433 246 191 27 chr1 219593674 219593894 -23070459 - L3 LINE CR1 -624 953 698 23 33 0 0 chr1 219594120 219594150 -23070203 + AT_rich Low_complexity Low_complexity 1 30 0 15835 119 8 13 chr1 219594272 219594413 -23069940 - Tigger1 DNA MER2_type 0 2418 2278 2029 116 0 0 chr1 219594413 219594680 -23069673 - AluSx SINE Alu -45 267 1 15835 119 8 13 chr1 219594680 219596918 -23067435 - Tigger1 DNA MER2_type -140 2278 49 15791 39 1 0 chr1 219596918 219598882 -23065471 - L1PA3 LINE L1 -2577 3569 1603 15399 24 0 1 chr1 219598882 219601478 -23062875 + L1PA3 LINE L1 3578 6155 0 371 167 0 0 chr1 219601479 219601539 -23062814 - Tigger1 DNA MER2_type -2358 60 1 305 278 118 0 chr1 219601614 219601758 -23062595 + L1MC4 LINE L1 7865 8025 -17 2223 197 16 39 chr1 219601818 219602335 -23062018 - MLT1D LTR MaLR 0 505 1 12181 165 16 7 chr1 219602823 219607963 -23056390 - L1PA11 LINE L1 0 7612 2386 1995 132 0 0 chr1 219607970 219608276 -23056077 - AluSx SINE Alu 0 314 9 3345 266 117 25 chr1 219608329 219609596 -23054757 - L1PA11 LINE L1 -6198 1383 1 217 340 67 46 chr1 219610711 219610949 -23053404 + L2 LINE L2 2298 2540 -774 1385 170 22 84 chr1 219611802 219612160 -23052193 + MER44D DNA MER2_type 4 609 0 2376 204 34 61 chr1 219612916 219613275 -23051078 + MER119 DNA MER1_type 6 344 -239 2064 117 14 3 chr1 219613275 219613565 -23050788 + AluSx SINE Alu 1 293 -19 2376 204 34 61 chr1 219613565 219613799 -23050554 + MER119 DNA MER1_type 344 583 0 39 38 0 0 chr1 219614013 219614066 -23050287 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr1 219614339 219614368 -23049985 + AT_rich Low_complexity Low_complexity 1 29 0 288 53 0 0 chr1 219615522 219615560 -23048793 + (TG)n Simple_repeat Simple_repeat 1 38 0 375 152 0 0 chr1 219615562 219615641 -23048712 + GA-rich Low_complexity Low_complexity 2 80 0 513 135 40 32 chr1 219616778 219616904 -23047449 + MER96B DNA MER1_type? 63 189 -228 313 308 108 33 chr1 219617014 219617228 -23047125 + Charlie8 DNA MER1_type 16 245 -2172 309 289 0 0 chr1 219617289 219617379 -23046974 - MER91B DNA MER1_type -5 185 96 21 0 0 0 chr1 219618158 219618179 -23046174 + AT_rich Low_complexity Low_complexity 1 21 0 10707 143 26 11 chr1 219618263 219619025 -23045328 - L1PA13 LINE L1 -4 6159 5410 2368 99 0 0 chr1 219619025 219619328 -23045025 - AluSg SINE Alu -7 303 1 10707 143 26 11 chr1 219619328 219621352 -23043001 - L1PA13 LINE L1 -753 5410 3326 1846 121 70 7 chr1 219621365 219621638 -23042715 - AluSx SINE Alu -20 292 3 923 247 6 0 chr1 219623826 219624008 -23040345 - MER5A DNA MER1_type -6 183 1 802 282 107 32 chr1 219624778 219625804 -23038549 + L1MC/D LINE L1 4436 5538 -747 21 36 0 0 chr1 219626017 219626045 -23038308 + AT_rich Low_complexity Low_complexity 1 28 0 630 269 101 0 chr1 219626879 219627087 -23037266 - MLT1D LTR MaLR 0 505 277 438 200 128 67 chr1 219627229 219627335 -23037018 - MLT1D LTR MaLR -283 222 124 2777 10 0 3 chr1 219627335 219627643 -23036710 - AluYa5 SINE Alu -4 307 1 438 200 128 67 chr1 219627643 219627731 -23036622 - MLT1D LTR MaLR -381 124 16 22 0 0 0 chr1 219628192 219628214 -23036139 + AT_rich Low_complexity Low_complexity 1 22 0 694 134 81 27 chr1 219628558 219628707 -23035646 + L1MA6 LINE L1 6027 6183 -117 279 263 81 20 chr1 219628878 219628977 -23035376 - MLT1L LTR MaLR -8 607 503 952 294 77 43 chr1 219629254 219629696 -23034657 + LTR67 LTR ERVL 101 557 0 283 303 112 40 chr1 219629696 219629848 -23034505 - MLT1K LTR MaLR -366 222 60 189 320 0 88 chr1 219630319 219630444 -23033909 + MIR SINE MIR 79 192 -70 235 270 9 54 chr1 219630997 219631108 -23033245 + L1 LINE L1 2630 2735 -3411 23 54 0 0 chr1 219631195 219631232 -23033121 + AT_rich Low_complexity Low_complexity 1 37 0 311 282 99 24 chr1 219631273 219631699 -23032654 - L1M4 LINE L1 -2751 3981 3524 8809 143 26 28 chr1 219631709 219633483 -23030870 - L1MA2 LINE L1 -200 6104 4339 2203 128 0 3 chr1 219633483 219633796 -23030557 + AluSx SINE Alu 1 312 0 8809 143 26 28 chr1 219633796 219634541 -23029812 - L1MA2 LINE L1 -1965 4339 3594 269 312 108 20 chr1 219634540 219635076 -23029277 - L1M4 LINE L1 -3364 3368 2786 * 432 343 33 50 chr1 219635612 219635971 -23028382 - HAL1 LINE L1 -776 1731 1379 1834 148 7 13 chr1 219636172 219636191 -23028162 - AluJb SINE Alu -10 302 284 276 53 0 0 chr1 219636191 219636229 -23028124 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1834 148 7 13 chr1 219636229 219636513 -23027840 - AluJb SINE Alu -28 284 1 25 75 0 0 chr1 219636634 219636687 -23027666 + AT_rich Low_complexity Low_complexity 1 53 0 41942 53 10 1 chr1 219638817 219644904 -23019449 + L1PA4 LINE L1 11 6152 -3 772 172 91 48 chr1 219644915 219645124 -23019229 - L1 LINE L1 -1598 4548 4331 614 293 32 24 chr1 219645228 219645474 -23018879 - L1M4 LINE L1 -4950 1703 1456 698 313 23 65 chr1 219645564 219645948 -23018405 - L1M4 LINE L1 -5515 1138 771 288 169 221 0 chr1 219645966 219646043 -23018310 + L1MB3 LINE L1 6083 6176 -7 196 239 22 0 chr1 219646871 219646917 -23017436 - MIR SINE MIR -17 245 199 503 243 41 124 chr1 219646956 219647223 -23017130 + MIR SINE MIR 12 256 -6 379 300 103 47 chr1 219647913 219648253 -23016100 + L1MEc LINE L1 2102 2460 -3936 348 189 0 0 chr1 219648267 219648341 -23016012 + (TA)n Simple_repeat Simple_repeat 2 75 0 635 283 100 51 chr1 219648570 219648692 -23015661 + L1MEc LINE L1 2854 2969 -3246 1507 121 24 136 chr1 219648692 219648801 -23015552 + AluJb SINE Alu 2 122 -180 1956 131 27 0 chr1 219648801 219649098 -23015255 + AluSx SINE Alu 7 311 -1 1507 121 24 136 chr1 219649098 219649327 -23015026 + AluJb SINE Alu 122 302 0 635 283 100 51 chr1 219649327 219649614 -23014739 + L1MEc LINE L1 2969 3283 -2932 934 322 116 13 chr1 219649676 219650645 -23013708 + L1MEc LINE L1 3442 4509 -1706 647 233 119 0 chr1 219650691 219650867 -23013486 - MIR SINE MIR -10 252 56 490 306 104 33 chr1 219650895 219651895 -23012458 + L1MEc LINE L1 4563 5633 -602 1670 74 135 0 chr1 219652005 219652249 -23012104 + AluSc SINE Alu 1 277 -32 215 111 0 44 chr1 219652254 219652299 -23012054 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1338 87 0 0 chr1 219652405 219652566 -23011787 - AluSx SINE Alu -151 161 1 24 32 0 0 chr1 219652949 219652980 -23011373 + AT_rich Low_complexity Low_complexity 1 31 0 223 295 137 0 chr1 219653143 219653238 -23011115 - MIR SINE MIR -6 256 149 1931 163 0 3 chr1 219653810 219654111 -23010242 + AluSx SINE Alu 1 300 -12 2049 148 0 0 chr1 219654150 219654447 -23009906 + AluSx SINE Alu 1 297 -15 1205 176 0 0 chr1 219655483 219655671 -23008682 + AluJb SINE Alu 1 188 -124 388 292 189 53 chr1 219656206 219656603 -23007750 - MARNA DNA Mariner -99 487 37 2239 90 3 7 chr1 219656605 219656915 -23007438 + AluSg1 SINE Alu 1 309 0 259 298 215 6 chr1 219656923 219657081 -23007272 + MIR3 SINE MIR 11 201 -7 3585 219 17 7 chr1 219657492 219658377 -23005976 + L1M4c LINE L1 971 1864 -4520 328 244 22 0 chr1 219658407 219658497 -23005856 + L1M4c LINE L1 2016 2107 -4277 1325 149 14 10 chr1 219658499 219658707 -23005646 - AluJo SINE Alu -19 293 85 5642 230 51 8 chr1 219658708 219660574 -23003779 + L1M4c LINE L1 2098 4047 -2335 470 91 45 100 chr1 219660574 219660640 -23003713 + L1MB2 LINE L1 6065 6124 -47 1717 156 56 10 chr1 219660640 219660928 -23003425 + AluSx SINE Alu 1 301 -11 470 91 45 100 chr1 219660928 219660971 -23003382 + L1MB2 LINE L1 6124 6168 -3 26 30 0 0 chr1 219661006 219661039 -23003314 + AT_rich Low_complexity Low_complexity 1 33 0 476 279 92 11 chr1 219661953 219662245 -23002108 - L1MC/D LINE L1 -459 5662 5374 519 314 160 0 chr1 219664013 219664201 -23000152 - MIR SINE MIR -44 218 1 816 180 42 69 chr1 219664569 219664758 -22999595 - MLT1A1 LTR MaLR 0 365 182 666 145 131 55 chr1 219664775 219664920 -22999433 - FRAM SINE Alu -2 174 19 247 150 0 0 chr1 219665020 219665060 -22999293 - MLT1A1 LTR MaLR -325 40 1 22 70 0 0 chr1 219665078 219665121 -22999232 + AT_rich Low_complexity Low_complexity 1 43 0 951 205 71 58 chr1 219665154 219665409 -22998944 - L1MB4 LINE L1 -2 6178 5924 526 286 31 31 chr1 219665409 219665636 -22998717 - L1MC3 LINE L1 -1896 5889 5663 614 243 153 34 chr1 219665648 219665883 -22998470 + Charlie8 DNA MER1_type 70 332 -2085 218 211 0 0 chr1 219666547 219666585 -22997768 + L2 LINE L2 3201 3238 -75 30 45 0 0 chr1 219667033 219667077 -22997276 + AT_rich Low_complexity Low_complexity 1 44 0 286 220 0 0 chr1 219667138 219667197 -22997156 + MER116 DNA Mariner 20 78 -2 1905 153 26 40 chr1 219668126 219668505 -22995848 + THE1C LTR MaLR 2 375 0 491 295 39 0 chr1 219669152 219669281 -22995072 - MLT1J LTR MaLR -207 304 171 2978 99 18 5 chr1 219669294 219669729 -22994624 - L1PA10 LINE L1 -11 6157 5717 287 273 39 26 chr1 219669950 219670027 -22994326 - MIR SINE MIR -181 81 4 668 192 8 0 chr1 219671181 219671301 -22993052 + FLAM_C SINE Alu 1 121 -22 216 0 0 0 chr1 219671301 219671325 -22993028 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 381 308 19 0 chr1 219671456 219671563 -22992790 - L2 LINE L2 -2 3270 3162 2420 74 0 0 chr1 219671736 219672033 -22992320 + AluSx SINE Alu 1 297 -15 356 115 79 10 chr1 219672033 219672115 -22992238 + L1ME LINE L1 5389 5487 -667 207 214 0 18 chr1 219672436 219672492 -22991861 + T-rich Low_complexity Low_complexity 1 55 0 964 175 234 107 chr1 219672499 219672854 -22991499 - L1MC4 LINE L1 -6 8036 7613 639 242 0 0 chr1 219672854 219672974 -22991379 - FLAM_A SINE Alu -10 123 4 964 175 234 107 chr1 219672974 219673058 -22991295 - L1MC4 LINE L1 -429 7613 7541 1541 178 0 0 chr1 219673058 219673322 -22991031 + MER2 DNA MER2_type 1 264 -81 515 165 0 0 chr1 219673373 219673452 -22990901 + MER2 DNA MER2_type 267 345 0 1059 197 5 0 chr1 219673452 219673650 -22990703 - L1MC4 LINE L1 -500 7542 7344 1164 208 87 6 chr1 219673651 219673963 -22990390 - L1MC4 LINE L1 -750 7292 6956 186 261 0 0 chr1 219674131 219674177 -22990176 + MIR3 SINE MIR 157 202 -6 28 0 0 0 chr1 219674203 219674231 -22990122 + AT_rich Low_complexity Low_complexity 1 28 0 331 298 53 58 chr1 219675581 219675769 -22988584 + L1ME LINE L1 5458 5644 -477 261 320 77 13 chr1 219675967 219676123 -22988230 + LTR40a LTR ERVL 2 167 -352 2042 96 0 46 chr1 219726384 219726687 -22937666 + AluSq SINE Alu 1 289 -24 252 384 16 2 chr1 219727037 219727181 -22937172 + MIR SINE MIR 22 167 -65 547 211 82 86 chr1 219727182 219727319 -22937034 + L2 LINE L2 2543 2680 -634 638 138 101 0 chr1 219727319 219727428 -22936925 + L1PB3 LINE L1 6028 6147 -7 547 211 82 86 chr1 219727428 219727546 -22936807 + L2 LINE L2 2680 2797 -517 180 77 0 0 chr1 219728458 219728484 -22935869 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 969 151 13 0 chr1 219728487 219728639 -22935714 - AluSg/x SINE Alu -23 289 136 1082 62 0 0 chr1 219728709 219728837 -22935516 + AluSp SINE Alu 1 128 -185 1521 116 14 0 chr1 219728837 219729053 -22935300 + AluSp SINE Alu 84 302 -11 253 311 8 49 chr1 219729330 219729452 -22934901 + MER5A DNA MER1_type 55 171 -18 865 257 87 27 chr1 219729757 219730053 -22934300 + HAL1b LINE L1 836 1164 -184 333 0 0 0 chr1 219730053 219730090 -22934263 + (CA)n Simple_repeat Simple_repeat 2 38 0 865 257 87 27 chr1 219730090 219730197 -22934156 + HAL1b LINE L1 1164 1263 -85 3216 89 13 0 chr1 219731596 219732046 -22932307 - L1PA13 LINE L1 0 6163 5708 2107 122 0 0 chr1 219732061 219732382 -22931971 - AluSc SINE Alu 0 321 1 900 299 17 28 chr1 219732509 219732800 -22931553 + L3 LINE CR1 980 1267 -310 560 234 59 22 chr1 219732823 219733045 -22931308 - MER112 DNA MER1_type 0 260 31 288 169 221 0 chr1 219734471 219734548 -22929805 - L1MB3 LINE L1 -7 6176 6083 698 313 23 65 chr1 219734566 219734950 -22929403 + L1M3d LINE L1 421 788 -5515 5642 211 70 79 chr1 219735036 219736350 -22928003 + L1M3d LINE L1 801 2124 -4258 1325 149 14 10 chr1 219736350 219736558 -22927795 - AluJo SINE Alu -19 293 85 5642 211 70 79 chr1 219736558 219738425 -22925928 + L1M3d LINE L1 2124 4047 -2335 470 91 45 100 chr1 219738425 219738491 -22925862 + L1MB2 LINE L1 6065 6124 -47 1717 156 56 10 chr1 219738491 219738779 -22925574 + AluSx SINE Alu 1 301 -11 470 91 45 100 chr1 219738779 219738822 -22925531 + L1MB2 LINE L1 6124 6168 -3 26 30 0 0 chr1 219738857 219738890 -22925463 + AT_rich Low_complexity Low_complexity 1 33 0 476 279 92 11 chr1 219739804 219740096 -22924257 - L1MC/D LINE L1 -459 5662 5374 519 314 160 0 chr1 219741864 219742052 -22922301 - MIR SINE MIR -44 218 1 816 180 42 69 chr1 219742420 219742609 -22921744 - MLT1A1 LTR MaLR 0 365 182 933 162 137 39 chr1 219742626 219742830 -22921523 - AluJo SINE Alu -2 310 87 790 182 14 0 chr1 219742838 219742986 -22921367 - MLT1A1 LTR MaLR -215 150 1 22 70 0 0 chr1 219743004 219743047 -22921306 + AT_rich Low_complexity Low_complexity 1 43 0 951 205 71 58 chr1 219743080 219743335 -22921018 - L1MB4 LINE L1 -2 6178 5924 526 286 31 31 chr1 219743335 219743562 -22920791 - L1MC3 LINE L1 -1896 5889 5663 614 243 153 34 chr1 219743574 219743809 -22920544 + Charlie8 DNA MER1_type 70 332 -2085 218 211 0 0 chr1 219744473 219744511 -22919842 + L2 LINE L2 3201 3238 -75 30 45 0 0 chr1 219744959 219745003 -22919350 + AT_rich Low_complexity Low_complexity 1 44 0 286 220 0 0 chr1 219745064 219745123 -22919230 + MER116 DNA Mariner 20 78 -2 1905 153 26 40 chr1 219746052 219746431 -22917922 + THE1C LTR MaLR 2 375 0 491 295 39 0 chr1 219747078 219747207 -22917146 - MLT1J LTR MaLR -207 304 171 2978 99 18 5 chr1 219747220 219747655 -22916698 - L1PA10 LINE L1 -11 6157 5717 287 273 39 26 chr1 219747876 219747953 -22916400 - MIR SINE MIR -181 81 4 668 192 8 0 chr1 219749107 219749227 -22915126 + FLAM_C SINE Alu 1 121 -22 216 0 0 0 chr1 219749227 219749251 -22915102 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 381 308 19 0 chr1 219749382 219749489 -22914864 - L2 LINE L2 -2 3270 3162 2420 74 0 0 chr1 219749662 219749959 -22914394 + AluSx SINE Alu 1 297 -15 356 115 79 10 chr1 219749959 219750041 -22914312 + L1ME LINE L1 5389 5487 -667 207 214 0 18 chr1 219750362 219750418 -22913935 + T-rich Low_complexity Low_complexity 1 55 0 964 175 234 107 chr1 219750425 219750780 -22913573 - L1MC4 LINE L1 -6 8036 7613 639 242 0 0 chr1 219750780 219750900 -22913453 - FLAM_A SINE Alu -10 123 4 964 175 234 107 chr1 219750900 219750984 -22913369 - L1MC4 LINE L1 -429 7613 7541 1541 178 0 0 chr1 219750984 219751248 -22913105 + MER2 DNA MER2_type 1 264 -81 515 165 0 0 chr1 219751299 219751378 -22912975 + MER2 DNA MER2_type 267 345 0 1059 197 5 0 chr1 219751378 219751576 -22912777 - L1MC4 LINE L1 -500 7542 7344 1164 208 87 6 chr1 219751577 219751889 -22912464 - L1MC4 LINE L1 -750 7292 6956 186 261 0 0 chr1 219752057 219752103 -22912250 + MIR3 SINE MIR 157 202 -6 28 0 0 0 chr1 219752129 219752157 -22912196 + AT_rich Low_complexity Low_complexity 1 28 0 331 298 53 58 chr1 219753507 219753695 -22910658 + L1ME LINE L1 5458 5644 -477 261 320 77 13 chr1 219753893 219754049 -22910304 + LTR40a LTR ERVL 2 167 -352 339 25 0 0 chr1 219754375 219754415 -22909938 + (CA)n Simple_repeat Simple_repeat 1 40 0 200 119 0 24 chr1 219754425 219754467 -22909886 + (TA)n Simple_repeat Simple_repeat 2 42 0 247 171 0 0 chr1 219754511 219754552 -22909801 + LTR40b LTR ERVL 421 461 -1 196 239 22 0 chr1 219755453 219755499 -22908854 - MIR SINE MIR -17 245 199 503 243 41 124 chr1 219755538 219755805 -22908548 + MIR SINE MIR 12 256 -6 383 308 182 3 chr1 219756495 219756803 -22907550 + L1MEc LINE L1 2102 2464 -3932 348 189 0 0 chr1 219756849 219756923 -22907430 + (TA)n Simple_repeat Simple_repeat 2 75 0 635 283 100 51 chr1 219757152 219757274 -22907079 + L1MEc LINE L1 2854 2969 -3246 1507 121 24 136 chr1 219757274 219757383 -22906970 + AluJb SINE Alu 2 122 -180 1956 131 27 0 chr1 219757383 219757680 -22906673 + AluSx SINE Alu 7 311 -1 1507 121 24 136 chr1 219757680 219757909 -22906444 + AluJb SINE Alu 122 302 0 635 283 100 51 chr1 219757909 219758196 -22906157 + L1MEc LINE L1 2969 3283 -2932 934 322 116 13 chr1 219758258 219759227 -22905126 + L1MEc LINE L1 3442 4509 -1706 647 233 119 0 chr1 219759273 219759449 -22904904 - MIR SINE MIR -10 252 56 490 306 104 33 chr1 219759477 219760477 -22903876 + L1MEc LINE L1 4563 5633 -602 1670 74 135 0 chr1 219760587 219760831 -22903522 + AluSc SINE Alu 1 277 -32 215 111 0 44 chr1 219760836 219760881 -22903472 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 221 228 35 18 chr1 219760908 219760965 -22903388 + GA-rich Low_complexity Low_complexity 4 61 0 1488 159 66 4 chr1 219761216 219761487 -22902866 + AluJb SINE Alu 4 291 -21 392 93 29 43 chr1 219761515 219761640 -22902713 + (TA)n Simple_repeat Simple_repeat 2 126 -12 2205 110 3 0 chr1 219761640 219761930 -22902423 - AluSx SINE Alu -21 291 1 392 93 29 43 chr1 219761930 219761943 -22902410 + (TA)n Simple_repeat Simple_repeat 126 138 0 24 32 0 0 chr1 219762313 219762344 -22902009 + AT_rich Low_complexity Low_complexity 1 31 0 223 295 137 0 chr1 219762507 219762602 -22901751 - MIR SINE MIR -6 256 149 1931 163 0 3 chr1 219763174 219763475 -22900878 + AluSx SINE Alu 1 300 -12 2049 148 0 0 chr1 219763514 219763811 -22900542 + AluSx SINE Alu 1 297 -15 1205 176 0 0 chr1 219764847 219765035 -22899318 + AluJb SINE Alu 1 188 -124 388 292 189 53 chr1 219765570 219765967 -22898386 - MARNA DNA Mariner -99 487 37 2239 90 3 7 chr1 219765969 219766279 -22898074 + AluSg1 SINE Alu 1 309 0 259 298 215 6 chr1 219766287 219766445 -22897908 + MIR3 SINE MIR 11 201 -7 181 269 115 39 chr1 219766708 219766786 -22897567 + MIR3 SINE MIR 122 205 -3 2244 107 10 10 chr1 219766885 219767194 -22897159 - AluSx SINE Alu -3 309 1 1771 97 24 7 chr1 219767202 219767490 -22896863 - L1MA5A LINE L1 -3 6294 6002 1528 186 17 69 chr1 219768286 219768646 -22895707 + MER58B DNA MER1_type 1 341 0 613 165 180 46 chr1 219769062 219769256 -22895097 + HsTC2 DNA Tc2 19 238 -1660 3804 174 48 22 chr1 219769509 219769794 -22894559 + L1MB8 LINE L1 5376 5652 -526 1944 126 7 26 chr1 219769794 219770096 -22894257 + AluSq SINE Alu 1 296 -17 3804 174 48 22 chr1 219770096 219770587 -22893766 + L1MB8 LINE L1 5652 6172 -6 396 261 0 0 chr1 219770699 219770791 -22893562 - MIR3 SINE MIR -8 200 109 4806 58 3 0 chr1 219771117 219771742 -22892611 - L1PA5 LINE L1 -3006 3140 2514 * 13656 45 0 2 chr1 219771736 219774778 -22889575 + L1PA5 LINE L1 3130 6166 0 1864 112 72 7 chr1 219776149 219776425 -22887928 - AluSx SINE Alu -18 294 1 649 270 39 52 chr1 219776487 219776720 -22887633 - MIR SINE MIR -9 253 24 430 298 0 46 chr1 219777773 219777904 -22886449 + L2 LINE L2 3148 3272 0 654 287 39 1 chr1 219778088 219778290 -22886063 - MIR SINE MIR -22 240 34 1279 100 0 18 chr1 219778687 219778857 -22885496 + AluJb SINE Alu 131 297 -15 320 288 79 13 chr1 219778876 219779105 -22885248 - L2 LINE L2 -703 2611 2368 225 65 0 0 chr1 219779852 219779883 -22884470 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 182 211 0 0 chr1 219779895 219779933 -22884420 - L2 LINE L2 -13 3259 3222 580 194 26 4 chr1 219780499 219780627 -22883726 + L1M3 LINE L1 5373 5498 -686 1421 152 92 97 chr1 219780635 219780984 -22883369 - MER7A DNA MER2_type 0 346 2 811 190 62 22 chr1 219780995 219781174 -22883179 - L1ME LINE L1 -546 5624 5439 2602 55 3 6 chr1 219781175 219781487 -22882866 - AluY SINE Alu 0 311 1 2185 121 0 3 chr1 219781974 219782280 -22882073 + AluSx SINE Alu 1 305 -7 2035 125 14 0 chr1 219783987 219784274 -22880079 + AluSx SINE Alu 1 291 -21 1882 138 13 26 chr1 219784283 219784588 -22879765 + AluJo SINE Alu 1 301 -11 265 307 51 1 chr1 219784774 219784886 -22879467 - MIR SINE MIR -66 142 37 578 104 0 0 chr1 219789032 219789109 -22875244 - AluJ/FLAM SINE Alu -234 78 2 2118 156 25 47 chr1 219789556 219789961 -22874392 + MSTD LTR MaLR 1 396 0 196 282 0 0 chr1 219790498 219790537 -22873816 + L2 LINE L2 3179 3217 -96 21 0 0 0 chr1 219790626 219790647 -22873706 + AT_rich Low_complexity Low_complexity 1 21 0 276 318 45 23 chr1 219791445 219791577 -22872776 + L2 LINE L2 3136 3270 -2 2461 114 28 20 chr1 219791758 219792154 -22872199 - L1MA5A LINE L1 -10 6287 5889 22 0 0 0 chr1 219793302 219793324 -22871029 + AT_rich Low_complexity Low_complexity 1 22 0 1654 265 57 18 chr1 219794285 219794886 -22869467 + L1MC4a LINE L1 7185 7808 0 2334 109 0 0 chr1 219795648 219795959 -22868394 - AluSx SINE Alu -1 311 1 267 312 101 15 chr1 219798447 219798646 -22865707 - L2 LINE L2 0 3313 3098 189 171 0 0 chr1 219799226 219799261 -22865092 + (CATA)n Simple_repeat Simple_repeat 1 35 0 295 278 41 0 chr1 219799314 219799411 -22864942 + L1ME LINE L1 5571 5671 -450 1992 113 41 20 chr1 219799772 219800064 -22864289 + AluJb SINE Alu 3 300 -12 1792 170 52 6 chr1 219800503 219800832 -22863521 - MER2 DNA MER2_type 0 344 1 29 0 0 0 chr1 219800833 219800862 -22863491 + AT_rich Low_complexity Low_complexity 1 29 0 635 220 0 15 chr1 219801686 219801818 -22862535 + FLAM_A SINE Alu 1 130 -12 189 132 0 0 chr1 219802223 219802261 -22862092 + (A)n Simple_repeat Simple_repeat 1 38 0 377 271 139 0 chr1 219802889 219803055 -22861298 + L2 LINE L2 2875 3063 -250 21 0 0 0 chr1 219803309 219803330 -22861023 + AT_rich Low_complexity Low_complexity 1 21 0 2309 91 3 7 chr1 219803875 219804173 -22860180 + AluSq SINE Alu 1 297 -16 25 0 0 0 chr1 219804628 219804653 -22859700 + AT_rich Low_complexity Low_complexity 1 25 0 551 168 178 96 chr1 219804661 219804964 -22859389 + L1ME4a LINE L1 5510 5837 -284 2472 57 0 0 chr1 219805062 219805345 -22859008 + AluY SINE Alu 2 284 -27 867 234 54 9 chr1 219806621 219806843 -22857510 + MER58 DNA MER1_type 2 233 -2187 654 236 174 25 chr1 219806894 219807170 -22857183 + MER5C DNA MER1_type 8 324 0 299 318 84 0 chr1 219807544 219807651 -22856702 + L2 LINE L2 3134 3249 -23 1343 108 5 16 chr1 219810105 219810299 -22854054 + AluSq SINE Alu 111 302 -11 1851 142 7 0 chr1 219811262 219811536 -22852817 - AluSx SINE Alu -6 306 31 8878 133 107 19 chr1 219811536 219813108 -22851245 + pTR5 LTR ERV1 583 2438 0 286 310 108 25 chr1 219813312 219813470 -22850883 - MIR SINE MIR 0 262 92 455 194 111 61 chr1 219813523 219813596 -22850757 + MER5A DNA MER1_type 1 69 -120 2210 142 0 0 chr1 219813596 219813907 -22850446 + AluSx SINE Alu 1 311 -1 455 194 111 61 chr1 219813907 219814013 -22850340 + MER5A DNA MER1_type 69 189 0 24 53 0 0 chr1 219814411 219814449 -22849904 + AT_rich Low_complexity Low_complexity 1 38 0 228 129 29 0 chr1 219815062 219815110 -22849243 + MIR SINE MIR 113 161 -101 2310 110 7 0 chr1 219815114 219815415 -22848938 + AluSq SINE Alu 1 303 -10 216 339 65 30 chr1 219816913 219817118 -22847235 - MIR3 SINE MIR -38 224 15 739 147 77 63 chr1 219818083 219818360 -22845993 + MLT1A1 LTR MaLR 3 372 -24 2550 159 36 60 chr1 219818904 219818996 -22845357 + MER67A LTR ERV1 3 96 -447 2192 96 7 14 chr1 219818996 219819288 -22845065 + AluSx SINE Alu 1 290 -22 2550 159 36 60 chr1 219819288 219819601 -22844752 + MER67A LTR ERV1 96 394 -149 2326 103 0 0 chr1 219819601 219819892 -22844461 - AluSg SINE Alu -19 291 1 2550 159 36 60 chr1 219819892 219820039 -22844314 + MER67A LTR ERV1 394 543 0 939 96 37 0 chr1 219820645 219820781 -22843572 - FRAM SINE Alu -13 163 23 540 217 62 64 chr1 219820884 219821076 -22843277 + MIR SINE MIR 1 189 -63 2064 101 0 35 chr1 219822935 219823207 -22841146 + AluSg SINE Alu 13 267 -43 432 0 0 0 chr1 219823207 219823255 -22841098 + (CA)n Simple_repeat Simple_repeat 2 49 0 2064 101 0 35 chr1 219823255 219823272 -22841081 + AluSg SINE Alu 267 283 -27 550 289 44 6 chr1 219823707 219823887 -22840466 - MIR SINE MIR -51 211 25 2323 113 6 0 chr1 219824164 219824475 -22839878 - AluSq SINE Alu 0 313 1 972 169 19 6 chr1 219824596 219824756 -22839597 - FRAM SINE Alu -14 162 1 2383 82 0 0 chr1 219824765 219825071 -22839282 - AluSx SINE Alu 0 309 4 2125 111 21 0 chr1 219825709 219825998 -22838355 - AluSq SINE Alu -18 295 1 2327 128 0 0 chr1 219829334 219829646 -22834707 - AluSx SINE Alu 0 312 1 411 252 29 0 chr1 219830047 219830150 -22834203 - MIR SINE MIR -97 165 60 2472 93 0 6 chr1 219830619 219830932 -22833421 - AluSx SINE Alu -1 311 1 828 260 152 12 chr1 219831353 219831819 -22832534 + L2 LINE L2 2785 3311 -2 24 0 0 0 chr1 219832093 219832117 -22832236 + AT_rich Low_complexity Low_complexity 1 24 0 2506 145 29 22 chr1 219832838 219833205 -22831148 + L1MB3 LINE L1 5688 6060 -123 2441 90 3 0 chr1 219833205 219833515 -22830838 + AluY SINE Alu 1 311 0 2506 145 29 22 chr1 219833515 219833637 -22830716 + L1MB3 LINE L1 6060 6180 -3 593 286 39 51 chr1 219833745 219833782 -22830571 + MIR SINE MIR 4 40 -222 2425 103 22 6 chr1 219833782 219834140 -22830213 - THE1B LTR MaLR 0 364 1 593 286 39 51 chr1 219834140 219834357 -22829996 + MIR SINE MIR 40 255 -7 283 263 175 22 chr1 219834579 219834716 -22829637 - L2 LINE L2 0 3313 3156 328 267 193 27 chr1 219834949 219835136 -22829217 + L2 LINE L2 3005 3222 -91 1681 166 54 24 chr1 219835638 219835933 -22828420 + AluJb SINE Alu 1 304 -8 4007 183 38 53 chr1 219835954 219836102 -22828251 + L1MB7 LINE L1 4647 4796 -1388 2425 63 7 3 chr1 219836102 219836401 -22827952 + AluY SINE Alu 1 300 -11 4007 183 38 53 chr1 219836401 219836633 -22827720 + L1MB7 LINE L1 4796 5030 -1154 3249 68 0 26 chr1 219836633 219837089 -22827264 + MLT2A1 LTR ERVL 1 444 0 4007 183 38 53 chr1 219837089 219837116 -22827237 + L1MB7 LINE L1 5030 5056 -1128 4018 134 54 14 chr1 219837116 219837875 -22826478 - L1MA4 LINE L1 -4 6296 5508 4007 183 38 53 chr1 219837875 219838134 -22826219 + L1MB7 LINE L1 5056 5317 -867 2602 65 0 0 chr1 219838134 219838443 -22825910 + AluY SINE Alu 1 309 -2 4007 183 38 53 chr1 219838443 219839209 -22825144 + L1MB7 LINE L1 5317 6063 -121 2458 91 3 0 chr1 219839209 219839516 -22824837 + AluY SINE Alu 1 308 -3 4007 183 38 53 chr1 219839516 219839630 -22824723 + L1MB7 LINE L1 6063 6177 -7 330 45 0 0 chr1 219839817 219839861 -22824492 + (TG)n Simple_repeat Simple_repeat 2 45 0 518 280 174 0 chr1 219839876 219840083 -22824270 - MIR SINE MIR 0 262 20 410 328 98 33 chr1 219840084 219840450 -22823903 - L2 LINE L2 -854 2460 2071 3039 163 60 2 chr1 219842971 219843537 -22820816 + LTR26 LTR ERV1 5 603 0 184 309 74 43 chr1 219843956 219844186 -22820167 - L2 LINE L2 -222 3050 2814 726 208 191 0 chr1 219844241 219844419 -22819934 + MER58A DNA MER1_type 13 224 0 2341 111 0 0 chr1 219844643 219844940 -22819413 + AluSq SINE Alu 1 297 -16 254 292 0 0 chr1 219844942 219845007 -22819346 + MER117 DNA MER1_type 42 106 -91 4105 71 11 25 chr1 219846509 219846628 -22817725 - MER41A LTR ERV1 -1 553 434 2499 74 6 3 chr1 219846628 219846940 -22817413 + AluSq SINE Alu 1 313 0 4105 71 11 25 chr1 219846940 219847381 -22816972 - MER41A LTR ERV1 -120 434 1 298 284 0 39 chr1 219848915 219849017 -22815336 + MIR3 SINE MIR 90 187 -21 357 255 193 6 chr1 219849196 219849357 -22814996 + L2 LINE L2 2877 3067 -246 744 169 21 0 chr1 219849357 219849499 -22814854 - MER53 DNA DNA -44 145 1 1668 213 10 20 chr1 219849988 219850169 -22814184 + MLT1B LTR MaLR 1 182 -208 2379 107 3 0 chr1 219850169 219850477 -22813876 + AluSx SINE Alu 1 309 -3 1668 213 10 20 chr1 219850477 219850689 -22813664 + MLT1B LTR MaLR 182 390 0 181 222 0 0 chr1 219851172 219851208 -22813145 + L2 LINE L2 3221 3256 -16 201 261 0 0 chr1 219852693 219852739 -22811614 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 659 113 94 0 chr1 219852739 219852876 -22811477 - AluJb SINE Alu 0 312 166 3628 148 117 23 chr1 219852876 219854252 -22810101 + pTR5 LTR ERV1 743 2606 0 227 167 0 0 chr1 219854252 219854288 -22810065 - AluJb SINE Alu -133 169 134 1445 174 118 11 chr1 219854288 219854558 -22809795 - AluJo SINE Alu -13 299 1 320 336 32 0 chr1 219855050 219855175 -22809178 - L3 LINE CR1 -375 1202 1074 231 303 118 0 chr1 219855275 219855394 -22808959 + MIR SINE MIR 27 159 -103 2127 98 20 17 chr1 219856084 219856381 -22807972 + AluSq SINE Alu 1 298 -15 1140 229 122 17 chr1 219856576 219856987 -22807366 + MLT2B1 LTR ERVL 3 456 -64 733 193 21 7 chr1 219857021 219857161 -22807192 + MLT1A1 LTR MaLR 8 149 -216 227 200 0 0 chr1 219857172 219857217 -22807136 + MLT2D LTR ERVL 370 414 0 1863 162 16 7 chr1 219857238 219857547 -22806806 + AluSx SINE Alu 1 312 0 322 289 170 16 chr1 219857790 219857984 -22806369 - MLT1J LTR MaLR 0 511 288 * 358 229 42 90 chr1 219857958 219858124 -22806229 - MLT1L LTR MaLR -221 394 237 202 329 65 41 chr1 219858305 219858551 -22805802 - L2 LINE L2 -499 2815 2564 254 323 58 26 chr1 219858616 219858805 -22805548 - L2 LINE L2 -907 2407 2213 2280 88 10 0 chr1 219858897 219859193 -22805160 + AluSx SINE Alu 1 299 -13 1108 240 59 49 chr1 219859478 219859790 -22804563 - L1M4 LINE L1 -847 5299 4979 2224 120 0 3 chr1 219859790 219860089 -22804264 + AluSx SINE Alu 1 298 -14 1108 240 59 49 chr1 219860089 219860247 -22804106 - L1M4 LINE L1 -1167 4979 4824 272 222 0 0 chr1 219860239 219860302 -22804051 - L1M4 LINE L1 -2233 3913 3851 * 2529 47 3 3 chr1 219860541 219860839 -22803514 + AluY SINE Alu 1 298 -13 223 292 226 33 chr1 219861121 219861453 -22802900 + L3 LINE CR1 1137 1532 -45 291 181 429 0 chr1 219861586 219861691 -22802662 - MIR SINE MIR -5 257 108 1429 65 150 5 chr1 219862237 219862437 -22801916 - AluYa8 SINE Alu -13 297 69 248 269 13 26 chr1 219863143 219863221 -22801132 + MER5B DNA MER1_type 102 178 0 2223 120 7 3 chr1 219864341 219864650 -22799703 + AluSx SINE Alu 1 310 -2 29 0 0 0 chr1 219864787 219864816 -22799537 + AT_rich Low_complexity Low_complexity 1 29 0 223 246 8 77 chr1 219867164 219867294 -22797059 + CT-rich Low_complexity Low_complexity 1 121 0 207 200 22 0 chr1 219867715 219867760 -22796593 + L2 LINE L2 3261 3306 -7 2413 94 0 3 chr1 219867760 219868058 -22796295 + AluSx SINE Alu 1 297 -15 1556 217 13 0 chr1 219868328 219868627 -22795726 + AluJo SINE Alu 3 305 -7 206 163 41 0 chr1 219868629 219868678 -22795675 + GA-rich Low_complexity Low_complexity 4 54 0 1596 119 14 0 chr1 219868790 219869000 -22795353 - AluSq SINE Alu -100 213 1 1442 256 78 19 chr1 219869000 219869512 -22794841 - L1MC4 LINE L1 -132 7910 7369 1941 153 0 29 chr1 219871657 219871971 -22792382 - AluJb SINE Alu -1 311 7 180 0 0 0 chr1 219871986 219872006 -22792347 + (T)n Simple_repeat Simple_repeat 1 20 0 226 286 0 0 chr1 219872394 219872443 -22791910 - Charlie4 DNA MER1_type -1911 50 2 23 0 0 0 chr1 219874561 219874584 -22789769 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr1 219874777 219874810 -22789543 + AT_rich Low_complexity Low_complexity 1 33 0 829 258 55 18 chr1 219875009 219875338 -22789015 - L1MC4 LINE L1 0 8042 7702 24 53 0 0 chr1 219875343 219875381 -22788972 + AT_rich Low_complexity Low_complexity 1 38 0 1912 139 0 0 chr1 219876219 219876477 -22787876 + AluSx SINE Alu 1 258 -54 1831 172 0 7 chr1 219878408 219878711 -22785642 + AluJo SINE Alu 11 311 -1 189 0 0 0 chr1 219879028 219879049 -22785304 + (T)n Simple_repeat Simple_repeat 1 21 0 1644 159 67 0 chr1 219879132 219879402 -22784951 + AluJb SINE Alu 1 288 -24 2109 108 26 7 chr1 219880200 219880507 -22783846 + AluSq SINE Alu 1 313 0 3604 52 16 0 chr1 219880507 219880947 -22783406 - MER41A LTR ERV1 -107 447 1 266 284 0 39 chr1 219882481 219882583 -22781770 + MIR3 SINE MIR 90 187 -21 337 255 193 6 chr1 219882762 219882923 -22781430 + L2 LINE L2 2877 3067 -246 764 176 21 0 chr1 219882923 219883065 -22781288 - MER53 DNA DNA -44 145 1 1724 203 13 23 chr1 219883554 219883735 -22780618 + MLT1B LTR MaLR 1 182 -208 2341 101 7 3 chr1 219883735 219884043 -22780310 + AluSx SINE Alu 1 309 -3 1724 203 13 23 chr1 219884043 219884255 -22780098 + MLT1B LTR MaLR 182 390 0 24 0 0 0 chr1 219886260 219886284 -22778069 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr1 219886284 219886305 -22778048 + (CA)n Simple_repeat Simple_repeat 2 22 0 679 113 94 0 chr1 219886307 219886444 -22777909 - AluJb SINE Alu 0 312 166 3788 147 117 23 chr1 219886444 219887820 -22776533 + pTR5 LTR ERV1 743 2606 0 232 167 0 0 chr1 219887820 219887856 -22776497 - AluJb SINE Alu -133 169 134 1401 174 118 11 chr1 219887856 219888126 -22776227 - AluJo SINE Alu -13 299 1 285 312 92 0 chr1 219888618 219888759 -22775594 - L3 LINE CR1 -375 1202 1049 193 311 118 0 chr1 219888843 219888962 -22775391 + MIR SINE MIR 27 159 -103 2086 95 20 17 chr1 219889651 219889945 -22774408 + AluSq SINE Alu 1 295 -18 862 248 126 24 chr1 219890143 219890555 -22773798 + MLT2B1 LTR ERVL 3 456 -64 770 186 21 7 chr1 219890589 219890729 -22773624 + MLT1A1 LTR MaLR 8 149 -216 231 200 0 0 chr1 219890740 219890785 -22773568 + MLT2D LTR ERVL 370 414 0 1810 162 16 7 chr1 219890806 219891115 -22773238 + AluSx SINE Alu 1 312 0 323 260 111 12 chr1 219891358 219891552 -22772801 - MLT1L LTR MaLR 0 615 288 * 366 229 42 90 chr1 219891526 219891692 -22772661 - MLT1L LTR MaLR -221 394 237 187 323 58 26 chr1 219892184 219892373 -22771980 - L2 LINE L2 -907 2407 2213 2155 105 10 0 chr1 219892465 219892759 -22771594 + AluSx SINE Alu 1 297 -15 1815 168 0 0 chr1 219893258 219893544 -22770809 + AluJb SINE Alu 1 286 -26 2083 137 13 0 chr1 219893556 219893855 -22770498 + AluSx SINE Alu 1 303 -9 2288 94 3 10 chr1 219893857 219894155 -22770198 + AluSp SINE Alu 1 296 -17 2527 214 12 6 chr1 219894659 219895174 -22769179 + LTR53 LTR ERVL 1 518 -1 585 155 144 0 chr1 219897051 219897148 -22767205 + FLAM_C SINE Alu 9 119 -24 1943 92 0 0 chr1 219897172 219897412 -22766941 - AluSx SINE Alu -19 293 54 860 115 0 0 chr1 219897412 219897525 -22766828 - AluSq/x SINE Alu -199 113 1 1207 237 241 0 chr1 219898186 219898651 -22765702 + L1ME3A LINE L1 5584 6160 -10 781 113 48 16 chr1 219898661 219898785 -22765568 + FLAM_C SINE Alu 1 128 -5 180 258 145 0 chr1 219899458 219899520 -22764833 - MIR3 SINE MIR -9 199 129 887 132 31 0 chr1 219900160 219900289 -22764064 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr1 219901969 219901990 -22762363 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 302 0 26 0 chr1 219902088 219902126 -22762227 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 586 177 18 0 chr1 219902132 219902245 -22762108 - FLAM_A SINE Alu -18 115 1 2235 91 7 0 chr1 219903600 219903904 -22760449 + AluSx SINE Alu 5 310 0 1846 94 8 4 chr1 219904261 219904506 -22759847 + AluSx SINE Alu 42 287 -25 2252 108 0 7 chr1 219905076 219905372 -22758981 - AluSx SINE Alu -18 294 1 219 114 0 0 chr1 219905407 219905442 -22758911 + (A)n Simple_repeat Simple_repeat 1 35 0 1530 141 12 20 chr1 219906013 219906268 -22758085 - AluJb SINE Alu -11 301 49 198 0 0 0 chr1 219907998 219908020 -22756333 + (A)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr1 219909394 219909415 -22754938 + (T)n Simple_repeat Simple_repeat 1 21 0 920 199 34 15 chr1 219912897 219913103 -22751250 + MER33 DNA MER1_type 5 214 -110 475 87 0 0 chr1 219913157 219913226 -22751127 + Alu SINE Alu 236 304 -8 312 188 14 29 chr1 219913226 219913295 -22751058 + MER33 DNA MER1_type 296 363 0 2272 129 0 0 chr1 219913326 219913636 -22750717 + AluSx SINE Alu 1 310 -2 281 294 153 25 chr1 219914422 219914585 -22749768 - L1ME LINE L1 -442 5679 5496 25 0 0 0 chr1 219915673 219915698 -22748655 + AT_rich Low_complexity Low_complexity 1 25 0 2032 123 7 3 chr1 219916162 219916446 -22747907 - AluSg SINE Alu -25 285 1 1644 159 67 0 chr1 219917244 219917514 -22746839 - AluJb SINE Alu -24 288 1 180 0 0 0 chr1 219917597 219917617 -22746736 + (A)n Simple_repeat Simple_repeat 1 20 0 1805 175 0 7 chr1 219917934 219918237 -22746116 - AluJo SINE Alu -1 311 11 1912 139 0 0 chr1 219920168 219920426 -22743927 - AluSx SINE Alu -54 258 1 24 53 0 0 chr1 219921264 219921302 -22743051 + AT_rich Low_complexity Low_complexity 1 38 0 829 258 55 18 chr1 219921307 219921636 -22742717 + L1MC4 LINE L1 7702 8042 0 26 30 0 0 chr1 219921835 219921868 -22742485 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr1 219922061 219922084 -22742269 + AT_rich Low_complexity Low_complexity 1 23 0 235 286 0 0 chr1 219924201 219924250 -22740103 + Charlie4 DNA MER1_type 2 50 -1911 189 0 0 0 chr1 219924638 219924659 -22739694 + (A)n Simple_repeat Simple_repeat 1 21 0 1846 147 0 41 chr1 219924674 219924988 -22739365 + AluJb SINE Alu 7 307 -5 186 267 0 67 chr1 219926244 219926304 -22738049 - MIR3 SINE MIR -48 160 105 1534 251 74 21 chr1 219927133 219927648 -22736705 + L1MC4 LINE L1 7369 7910 -132 1526 120 14 0 chr1 219927648 219927857 -22736496 + AluSq SINE Alu 1 212 -101 423 280 121 19 chr1 219928098 219928355 -22735998 - L1ME LINE L1 -299 5822 5540 1969 124 57 0 chr1 219928374 219928656 -22735697 + AluSg SINE Alu 2 299 -11 302 278 62 0 chr1 219928674 219928771 -22735582 + MIR SINE MIR 156 258 -4 2423 90 0 0 chr1 219928780 219929091 -22735262 - AluY SINE Alu 0 311 1 422 199 279 15 chr1 219930015 219930216 -22734137 - HAL1 LINE L1 -192 2315 2062 24 0 0 0 chr1 219931948 219931972 -22732381 + AT_rich Low_complexity Low_complexity 1 24 0 1163 259 145 53 chr1 219931989 219932739 -22731614 - HAL1 LINE L1 -29 2478 1660 241 218 436 0 chr1 219932976 219933077 -22731276 + MER58B DNA MER1_type 197 341 0 1061 224 154 85 chr1 219933093 219933324 -22731029 - HAL1 LINE L1 -1193 1314 1101 2068 124 17 0 chr1 219933324 219933615 -22730738 - AluSg SINE Alu -11 299 4 1061 224 154 85 chr1 219933615 219934128 -22730225 - HAL1 LINE L1 -1406 1101 518 21 36 0 0 chr1 219934311 219934339 -22730014 + AT_rich Low_complexity Low_complexity 1 28 0 269 229 84 46 chr1 219934724 219934855 -22729498 + L2 LINE L2 2923 3058 -214 1434 232 133 72 chr1 219935734 219936598 -22727755 + L2 LINE L2 2296 3192 -121 27 0 0 0 chr1 219938976 219939003 -22725350 + AT_rich Low_complexity Low_complexity 1 27 0 186 133 0 0 chr1 219941383 219941413 -22722940 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 257 229 115 33 chr1 219946331 219946453 -22717900 + Charlie7 DNA MER1_type 2434 2565 -47 417 342 112 21 chr1 219946469 219946808 -22717545 + L2 LINE L2 2606 2975 -339 23 0 0 0 chr1 219947676 219947699 -22716654 + AT_rich Low_complexity Low_complexity 1 23 0 1499 149 11 81 chr1 219947895 219948139 -22716214 + L1MB8 LINE L1 5831 6042 -136 2370 74 0 3 chr1 219948139 219948437 -22715916 + AluY SINE Alu 1 297 -14 1499 149 11 81 chr1 219948437 219948561 -22715792 + L1MB8 LINE L1 6042 6173 -5 1535 218 3 7 chr1 219948865 219949168 -22715185 - AluJo SINE Alu -10 302 1 1856 155 17 10 chr1 219949725 219950021 -22714332 + AluJo SINE Alu 1 298 -14 1104 216 58 45 chr1 219952325 219952704 -22711649 - Charlie1 DNA MER1_type 0 2761 2378 231 206 0 79 chr1 219952702 219952765 -22711588 - Charlie1 DNA MER1_type -2703 58 1 * 1642 141 59 43 chr1 219952897 219953201 -22711152 - AluJo SINE Alu -3 309 1 231 176 118 71 chr1 219953528 219953613 -22710740 + MER105 DNA DNA 114 202 -2 2410 89 0 0 chr1 219954054 219954356 -22709997 - AluSg SINE Alu -8 302 1 191 344 98 0 chr1 219955344 219955405 -22708948 - MIR3 SINE MIR -133 75 9 2223 113 0 3 chr1 219955834 219956136 -22708217 - AluSq SINE Alu -12 301 1 370 275 104 47 chr1 219956466 219956701 -22707652 + MIR SINE MIR 13 262 0 254 371 131 18 chr1 219956817 219957154 -22707199 + L2 LINE L2 2563 2937 -377 23 0 0 0 chr1 219958392 219958415 -22705938 + AT_rich Low_complexity Low_complexity 1 23 0 2576 46 0 7 chr1 219959118 219959424 -22704929 - AluY SINE Alu -7 304 1 2214 117 0 0 chr1 219959938 219960238 -22704115 + AluSx SINE Alu 1 300 -12 2361 78 0 28 chr1 219962285 219962605 -22701748 + AluY SINE Alu 1 311 0 315 273 157 8 chr1 219962689 219962810 -22701543 - L1ME3A LINE L1 -83 6087 5949 1908 269 91 18 chr1 219962920 219964203 -22700150 - L1ME3A LINE L1 -221 5949 4561 1586 273 147 57 chr1 219964328 219964528 -22699825 - L1ME3A LINE L1 -1911 4235 4054 2153 110 3 0 chr1 219964528 219964838 -22699515 + AluSx SINE Alu 3 313 0 1586 273 147 57 chr1 219964838 219965614 -22698739 - L1ME3A LINE L1 -2092 4054 3349 2641 49 0 0 chr1 219965614 219965919 -22698434 - AluY SINE Alu -6 305 1 1586 273 147 57 chr1 219965919 219966516 -22697837 - L1ME3A LINE L1 -2797 3349 2519 270 98 0 0 chr1 219966571 219966612 -22697741 - MADE1 DNA Mariner -39 41 1 2332 153 70 9 chr1 219966621 219967160 -22697193 + L1M3f LINE L1 46 661 -4667 2014 99 44 0 chr1 219967209 219967482 -22696871 + AluSx SINE Alu 11 295 -17 765 194 0 0 chr1 219967510 219967639 -22696714 - FAM SINE Alu -53 132 4 2052 113 10 0 chr1 219967940 219968231 -22696122 + AluSc SINE Alu 1 294 -15 21 57 0 0 chr1 219968291 219968326 -22696027 + AT_rich Low_complexity Low_complexity 1 35 0 2115 115 0 0 chr1 219968328 219968647 -22695706 + AluSc SINE Alu 1 319 0 1306 119 0 0 chr1 219969017 219969194 -22695159 - AluSg SINE Alu -120 190 14 1301 128 0 25 chr1 219969208 219969412 -22694941 - AluSp SINE Alu -114 199 1 986 145 14 58 chr1 219969420 219969627 -22694726 - Tigger2 DNA MER2_type -199 2519 2322 23 33 0 0 chr1 219969915 219969945 -22694408 + AT_rich Low_complexity Low_complexity 1 30 0 1053 165 0 0 chr1 219970083 219970241 -22694112 + FRAM SINE Alu 1 158 -18 665 323 68 43 chr1 219970332 219971050 -22693303 - L1M4 LINE L1 -1778 4368 3633 240 244 237 27 chr1 219971251 219971370 -22692983 - L1M4 LINE L1 -2772 3374 3281 1602 162 13 70 chr1 219971370 219971547 -22692806 - AluJb SINE Alu -10 302 149 2088 109 3 20 chr1 219971547 219971851 -22692502 - AluSp SINE Alu -14 299 1 1602 162 13 70 chr1 219971851 219971988 -22692365 - AluJb SINE Alu -163 149 6 240 244 237 27 chr1 219971988 219972306 -22692047 - L1M4 LINE L1 -2865 3281 2845 2232 112 3 0 chr1 219972410 219972714 -22691639 + AluSp SINE Alu 1 305 -8 215 230 14 27 chr1 219973112 219973186 -22691167 + GA-rich Low_complexity Low_complexity 5 77 0 337 303 146 12 chr1 219973386 219973503 -22690850 - L1MEd LINE L1 -5650 469 322 225 83 0 0 chr1 219973503 219973539 -22690814 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 337 303 146 12 chr1 219973539 219973586 -22690767 - L1MEd LINE L1 -5797 322 283 227 250 25 12 chr1 219973692 219973772 -22690581 - L1MEd LINE L1 -5974 145 65 21 0 0 0 chr1 219974674 219974695 -22689658 + AT_rich Low_complexity Low_complexity 1 21 0 261 329 82 12 chr1 219974767 219974852 -22689501 - L2 LINE L2 -46 3226 3136 506 79 53 0 chr1 219974984 219975060 -22689293 + MADE1 DNA Mariner 1 80 0 278 300 60 10 chr1 219975277 219975377 -22688976 + MIR3 SINE MIR 90 194 -14 780 150 0 8 chr1 219975505 219975625 -22688728 + FLAM_C SINE Alu 2 120 -23 1236 42 18 18 chr1 219976573 219976740 -22687613 + L1PA6 LINE L1 5987 6153 -1 1549 98 0 0 chr1 219977184 219977377 -22686976 + AluSq SINE Alu 5 197 -116 358 127 16 0 chr1 219977381 219977444 -22686909 + AluSq SINE Alu 236 299 -3 362 107 71 0 chr1 219977596 219977652 -22686701 - MER8 DNA MER2_type -2 237 178 1576 145 43 59 chr1 219977702 219977932 -22686421 + Tigger2 DNA MER2_type 2307 2539 -169 2200 91 0 17 chr1 219977932 219978228 -22686125 + AluSp SINE Alu 1 291 -22 1576 145 43 59 chr1 219978228 219978353 -22686000 + Tigger2 DNA MER2_type 2539 2646 -62 2156 132 20 0 chr1 219978353 219978657 -22685696 + AluSx SINE Alu 1 310 -2 1576 145 43 59 chr1 219978657 219978699 -22685654 + Tigger2 DNA MER2_type 2646 2687 -21 1945 230 50 60 chr1 219978784 219979440 -22684913 + MER21B LTR ERV1 88 737 -126 300 270 218 45 chr1 219980717 219981006 -22683347 - L2 LINE L2 -517 2797 2459 2188 123 0 3 chr1 219981575 219981883 -22682470 + AluSx SINE Alu 1 307 -5 394 357 66 37 chr1 219982031 219982409 -22681944 + L2 LINE L2 2443 2831 -483 262 275 0 88 chr1 219982428 219982508 -22681845 - L2 LINE L2 -15 3298 3226 1327 153 4 47 chr1 219983010 219983246 -22681107 + AluJo SINE Alu 86 311 -1 604 175 42 42 chr1 219983648 219983791 -22680562 + MLT1B LTR MaLR 190 332 -58 1592 166 66 4 chr1 219983791 219984062 -22680291 + AluJo SINE Alu 1 288 -24 21 36 0 0 chr1 219984097 219984125 -22680228 + AT_rich Low_complexity Low_complexity 1 28 0 1670 180 0 38 chr1 219985121 219985438 -22678915 + AluJo SINE Alu 1 305 -7 946 255 25 0 chr1 219985908 219986147 -22678206 - MIR SINE MIR -11 251 7 183 195 0 24 chr1 219986751 219986792 -22677561 - L3 LINE CR1 -904 673 634 988 198 62 62 chr1 219987212 219987520 -22676833 + MLT1E LTR MaLR 253 586 -7 1999 106 72 10 chr1 219987577 219987870 -22676483 + AluSx SINE Alu 1 311 -1 1368 124 37 58 chr1 219988641 219988882 -22675471 - AluJo SINE Alu -21 291 56 1419 228 74 49 chr1 219988884 219988920 -22675433 + L1ME2 LINE L1 533 567 -5963 2204 148 84 2 chr1 219988920 219989313 -22675040 + MSTA LTR MaLR 4 428 0 1419 228 74 49 chr1 219989313 219989724 -22674629 + L1ME2 LINE L1 567 991 -5539 1042 231 89 91 chr1 219989872 219990092 -22674261 + L1ME2 LINE L1 1734 1953 -4587 2177 120 10 0 chr1 219990092 219990401 -22673952 + AluSx SINE Alu 1 312 0 1042 231 89 91 chr1 219990401 219990465 -22673888 + L1ME2 LINE L1 1953 2016 -4524 2130 116 19 10 chr1 219990465 219990775 -22673578 + AluSq SINE Alu 1 313 0 1042 231 89 91 chr1 219990775 219990806 -22673547 + L1ME2 LINE L1 2016 2046 -4494 2102 136 0 0 chr1 219990806 219991100 -22673253 + AluSx SINE Alu 1 294 -18 1042 231 89 91 chr1 219991100 219991894 -22672459 + L1ME2 LINE L1 2046 2896 -3644 1886 166 0 3 chr1 219991894 219992178 -22672175 + AluSx SINE Alu 27 309 -3 1042 231 89 91 chr1 219992178 219992436 -22671917 + L1ME2 LINE L1 2896 3153 -3387 1935 167 0 3 chr1 219992438 219992749 -22671604 + AluSx SINE Alu 3 312 0 313 257 62 0 chr1 219992752 219992865 -22671488 + L1ME2 LINE L1 3365 3484 -3056 1422 150 36 120 chr1 219992866 219993200 -22671153 + AluJb SINE Alu 5 310 -2 300 338 0 0 chr1 219993200 219993277 -22671076 + polypurine Low_complexity Low_complexity 4 80 0 980 264 88 0 chr1 219993289 219993675 -22670678 + L1ME2 LINE L1 3893 4312 -2228 1280 120 11 0 chr1 219993675 219993858 -22670495 + AluSx SINE Alu 1 185 -127 3191 207 85 15 chr1 219993902 219994977 -22669376 + L1ME2 LINE L1 4305 5454 -1086 804 232 131 33 chr1 219995227 219995459 -22668894 + L1ME2 LINE L1 5699 5907 -651 2231 102 16 0 chr1 219995459 219995763 -22668590 + AluSc SINE Alu 1 309 0 804 232 131 33 chr1 219995763 219996227 -22668126 + L1ME2 LINE L1 5907 6535 -23 1021 155 78 5 chr1 219996365 219996558 -22667795 + MER2 DNA MER2_type 2 208 -137 306 276 39 31 chr1 219996654 219996781 -22667572 + L1MC4 LINE L1 7914 8041 -1 441 0 0 0 chr1 219997013 219997062 -22667291 + (CA)n Simple_repeat Simple_repeat 2 50 0 1514 130 159 4 chr1 219997132 219997402 -22666951 + AluSx SINE Alu 1 312 0 343 295 189 38 chr1 219997404 219997774 -22666579 + L2 LINE L2 2235 2660 -654 2332 88 3 0 chr1 219998115 219998412 -22665941 + AluSq SINE Alu 1 298 -15 2366 85 0 3 chr1 219998413 219998719 -22665634 + AluSc SINE Alu 1 305 -4 735 300 49 16 chr1 219998801 219999048 -22665305 + MIR SINE MIR 8 262 0 183 42 0 0 chr1 220000329 220000353 -22664000 + (G)n Simple_repeat Simple_repeat 1 24 0 2389 79 0 0 chr1 220001983 220002275 -22662078 + AluSg SINE Alu 3 294 -16 328 201 138 94 chr1 220004209 220004306 -22660047 + L1MC4 LINE L1 7513 7621 -421 1802 164 17 3 chr1 220004306 220004604 -22659749 + AluJo SINE Alu 1 302 -10 328 201 138 94 chr1 220004604 220004665 -22659688 + L1MC4 LINE L1 7621 7678 -364 182 312 46 46 chr1 220004924 220005033 -22659320 - MIR SINE MIR -77 185 77 281 220 28 46 chr1 220005225 220005334 -22659019 + GA-rich Low_complexity Low_complexity 3 109 0 1137 224 131 59 chr1 220005696 220006399 -22657954 + L1MC4 LINE L1 7113 7871 -171 2190 148 40 54 chr1 220006399 220006449 -22657904 + MSTB LTR MaLR 5 54 -372 2201 84 40 10 chr1 220006449 220006747 -22657606 + AluSx SINE Alu 1 307 -5 2190 148 40 54 chr1 220006747 220007123 -22657230 + MSTB LTR MaLR 54 425 -1 1137 224 131 59 chr1 220007123 220007147 -22657206 + L1MC4 LINE L1 7871 7892 -150 774 164 14 7 chr1 220007178 220007318 -22657035 + AluJb SINE Alu 169 309 -3 266 180 0 0 chr1 220007320 220007370 -22656983 + L1M4 LINE L1 2974 3023 -3123 507 66 53 0 chr1 220007372 220007448 -22656905 + MADE1 DNA Mariner 1 80 0 1320 204 39 8 chr1 220007501 220007756 -22656597 + AluJo SINE Alu 1 263 -49 338 264 141 12 chr1 220007985 220008148 -22656205 + L1ME3A LINE L1 2445 2628 -3518 2294 72 7 20 chr1 220008164 220008468 -22655885 + AluY SINE Alu 1 300 -11 375 242 216 2 chr1 220008630 220009043 -22655310 + L1ME3A LINE L1 2777 3277 -2869 577 285 120 45 chr1 220009405 220010015 -22654338 + L1ME3A LINE L1 3864 4824 -1322 24 32 0 0 chr1 220010334 220010365 -22653988 + AT_rich Low_complexity Low_complexity 1 31 0 2167 109 0 29 chr1 220011427 220011739 -22652614 + AluSx SINE Alu 1 303 -9 331 296 173 0 chr1 220011740 220011919 -22652434 + L1ME3A LINE L1 5341 5550 -2258 196 358 80 44 chr1 220012333 220012470 -22651883 - MIR3 SINE MIR -61 147 6 1941 127 78 27 chr1 220012537 220012908 -22651445 + MLT1B LTR MaLR 1 390 0 2264 98 10 3 chr1 220013105 220013401 -22650952 + AluSq SINE Alu 1 298 -15 1905 168 20 3 chr1 220013491 220013795 -22650558 + AluSx SINE Alu 1 309 -3 23 0 0 0 chr1 220013988 220014011 -22650342 + AT_rich Low_complexity Low_complexity 1 23 0 1509 86 54 14 chr1 220014059 220014280 -22650073 + MER30 DNA MER1_type 1 230 0 319 206 0 0 chr1 220014293 220014361 -22649992 + HAL1 LINE L1 145 212 -2295 1607 226 154 77 chr1 220014605 220015459 -22648894 + HAL1 LINE L1 539 1494 -1013 2319 104 0 0 chr1 220015459 220015766 -22648587 + AluSx SINE Alu 1 307 -5 1607 226 154 77 chr1 220015766 220015987 -22648366 + HAL1 LINE L1 1494 1697 -810 1089 243 127 31 chr1 220015998 220016582 -22647771 + HAL1 LINE L1 1777 2434 -73 2222 104 13 3 chr1 220016582 220016889 -22647464 - AluSx SINE Alu -2 310 1 1089 243 127 31 chr1 220016889 220016971 -22647382 + HAL1 LINE L1 2434 2507 0 606 260 183 7 chr1 220017729 220018029 -22646324 + L1ME3A LINE L1 5665 6017 -153 1231 165 38 73 chr1 220018128 220018227 -22646126 + AluJo SINE Alu 22 123 -189 2049 121 0 4 chr1 220018227 220018543 -22645810 - AluSx SINE Alu 0 317 3 1231 165 38 73 chr1 220018543 220018703 -22645650 + AluJo SINE Alu 123 273 -39 3766 171 12 36 chr1 220018703 220019533 -22644820 + L1MB5 LINE L1 5355 6164 -10 248 284 142 45 chr1 220019553 220019934 -22644419 + L1ME LINE L1 5479 5896 -225 723 279 162 29 chr1 220020014 220020391 -22643962 + L2 LINE L2 2887 3313 0 2748 198 73 57 chr1 220020718 220020987 -22643366 - MER21B LTR ERV1 -113 750 487 2411 88 0 0 chr1 220020987 220021284 -22643069 - AluSx SINE Alu -15 297 1 2748 198 73 57 chr1 220021284 220021752 -22642601 - MER21B LTR ERV1 -376 487 1 218 0 0 86 chr1 220021899 220021934 -22642419 + (TCTCCC)n Simple_repeat Simple_repeat 5 36 0 10214 57 47 10 chr1 220021939 220023272 -22641081 + SVA Other Other 2 1384 -2 21 36 0 0 chr1 220023485 220023513 -22640840 + AT_rich Low_complexity Low_complexity 1 28 0 2139 108 3 7 chr1 220023745 220024041 -22640312 + AluSx SINE Alu 3 297 -15 419 206 30 53 chr1 220025990 220026121 -22638232 + MER112 DNA MER1_type 38 165 -95 2186 120 0 3 chr1 220026187 220026487 -22637866 + AluSx SINE Alu 2 300 -12 245 75 25 0 chr1 220026741 220026781 -22637572 + L1PB3 LINE L1 6112 6152 -2 329 286 0 0 chr1 220026854 220026931 -22637422 + MER116 DNA Mariner 4 80 0 1962 108 17 17 chr1 220027171 220027459 -22636894 + AluSq SINE Alu 1 288 -25 2233 104 7 0 chr1 220027648 220027946 -22636407 + AluSx SINE Alu 1 300 -12 713 300 49 16 chr1 220030273 220030520 -22633833 - MIR SINE MIR 0 262 8 2317 92 0 3 chr1 220030602 220030908 -22633445 - AluSc SINE Alu -4 305 1 2317 81 0 3 chr1 220030909 220031205 -22633148 - AluSg SINE Alu -15 295 1 235 216 155 35 chr1 220032553 220032669 -22631684 + MIR SINE MIR 69 198 -64 2297 70 40 3 chr1 220032879 220033179 -22631174 + AluSq SINE Alu 1 311 -2 2037 90 10 24 chr1 220033776 220034064 -22630289 + AluSc SINE Alu 1 284 -25 2233 104 7 0 chr1 220034253 220034551 -22629802 + AluSx SINE Alu 1 300 -12 2765 3 0 0 chr1 220034827 220035122 -22629231 - AluYa5 SINE Alu -16 295 1 229 154 154 0 chr1 220035785 220035837 -22628516 + L1MA10 LINE L1 6267 6326 -8 786 154 8 0 chr1 220035837 220035954 -22628399 + FLAM_C SINE Alu 1 118 -15 982 167 39 8 chr1 220036009 220036317 -22628036 - MLT1A1 LTR MaLR 0 365 1 1629 125 116 60 chr1 220036989 220037105 -22627248 - L1PA16 LINE L1 -7 6159 6051 2436 70 0 22 chr1 220037105 220037419 -22626934 - AluY SINE Alu -4 307 1 1629 125 116 60 chr1 220037419 220037637 -22626716 - L1PA16 LINE L1 -115 6051 5806 909 171 0 0 chr1 220037686 220037815 -22626538 + FLAM_C SINE Alu 1 129 -4 21 0 0 0 chr1 220037851 220037872 -22626481 + AT_rich Low_complexity Low_complexity 1 21 0 1975 140 0 0 chr1 220037872 220038150 -22626203 + AluSx SINE Alu 1 278 -34 255 79 0 0 chr1 220038154 220038192 -22626161 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 304 179 0 36 chr1 220038195 220038251 -22626102 + AluSp SINE Alu 120 173 -130 225 344 112 8 chr1 220038571 220038696 -22625657 - Tigger8 DNA MER2_type -1 665 528 2067 116 27 3 chr1 220039054 220039346 -22625007 - AluSp SINE Alu -14 299 1 480 256 242 51 chr1 220039820 220039866 -22624487 - Tigger8 DNA MER2_type -235 431 395 1808 194 30 19 chr1 220039866 220040227 -22624126 + MLT1A1 LTR MaLR 1 365 0 480 256 242 51 chr1 220040227 220040453 -22623900 - Tigger8 DNA MER2_type -271 395 107 270 301 294 0 chr1 220040777 220041086 -22623267 - L2 LINE L2 -963 2351 1952 505 276 70 55 chr1 220041729 220042041 -22622312 + L1ME LINE L1 5503 5819 -302 2356 71 17 0 chr1 220042159 220042453 -22621900 + AluSp SINE Alu 1 299 -14 2091 128 0 0 chr1 220042528 220042824 -22621529 + AluSg SINE Alu 1 296 -14 2255 110 0 3 chr1 220042834 220043133 -22621220 + AluSx SINE Alu 1 298 -14 215 197 16 16 chr1 220043573 220043634 -22620719 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 499 278 179 0 chr1 220043834 220043996 -22620357 + MIR SINE MIR 6 196 -66 386 140 269 13 chr1 220044021 220044146 -22620207 + L1MB3 LINE L1 6029 6176 -6 23 0 0 0 chr1 220044300 220044323 -22620030 + AT_rich Low_complexity Low_complexity 1 23 0 1912 130 27 20 chr1 220044824 220045124 -22619229 + AluSx SINE Alu 1 302 -10 198 0 0 0 chr1 220045326 220045348 -22619005 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 21 36 0 0 chr1 220045419 220045447 -22618906 + AT_rich Low_complexity Low_complexity 1 28 0 2150 121 3 0 chr1 220045747 220046045 -22618308 + AluSx SINE Alu 1 299 -13 2257 84 0 48 chr1 220046570 220046880 -22617473 - AluY SINE Alu -16 295 1 428 295 91 29 chr1 220047038 220047279 -22617074 + MIR SINE MIR 5 260 -2 914 226 32 45 chr1 220047888 220048109 -22616244 + MER20 DNA MER1_type 2 219 0 1832 206 69 108 chr1 220048163 220048753 -22615600 - L1 LINE L1 -1208 4938 4380 702 195 32 8 chr1 220048753 220048876 -22615477 - FLAM_C SINE Alu -7 126 1 1832 206 69 108 chr1 220048876 220049009 -22615344 - L1 LINE L1 -1766 4380 4243 1248 189 68 25 chr1 220049149 220049430 -22614923 + MLT1C LTR MaLR 36 328 -139 * 1323 169 68 17 chr1 220049409 220049646 -22614707 + MLT2C2 LTR ERVL 214 462 -2 801 177 8 8 chr1 220050096 220050226 -22614127 + AluJo SINE Alu 5 134 -178 2215 107 3 19 chr1 220050720 220051037 -22613316 - AluSx SINE Alu 0 312 1 912 182 13 0 chr1 220051310 220051464 -22612889 + AluJo SINE Alu 140 295 -17 267 267 173 0 chr1 220051619 220051694 -22612659 - MIR SINE MIR -109 153 66 1382 142 27 36 chr1 220051764 220051989 -22612364 - AluJb SINE Alu -89 223 1 202 348 11 11 chr1 220052180 220052272 -22612081 - L2 LINE L2 -530 2784 2693 689 179 54 42 chr1 220052711 220052879 -22611474 + L1ME3 LINE L1 5985 6154 -8 1409 192 153 10 chr1 220052885 220053224 -22611129 + MSTD LTR MaLR 1 391 -5 369 0 0 0 chr1 220053236 220053277 -22611076 + (CA)n Simple_repeat Simple_repeat 2 42 0 442 268 67 41 chr1 220053353 220053547 -22610806 + MLT1L LTR MaLR 413 611 -4 817 181 211 5 chr1 220054097 220054296 -22610057 + MIR SINE MIR 8 247 -15 726 48 0 0 chr1 220054426 220054510 -22609843 - AluY SINE Alu -10 301 218 1614 49 0 0 chr1 220054510 220054695 -22609658 - AluY SINE Alu -126 185 1 706 213 39 0 chr1 220054891 220055018 -22609335 + FLAM_C SINE Alu 2 133 0 1991 147 0 29 chr1 220055137 220055271 -22609082 + AluSx SINE Alu 1 137 -175 2279 115 0 0 chr1 220055271 220055583 -22608770 + AluSx SINE Alu 1 312 0 1991 147 0 29 chr1 220055583 220055762 -22608591 + AluSx SINE Alu 137 305 -7 276 254 44 44 chr1 220055787 220055901 -22608452 + MLT1E LTR MaLR 22 135 -458 839 148 0 0 chr1 220056071 220056186 -22608167 + FRAM SINE Alu 16 130 -46 424 250 65 63 chr1 220056281 220056603 -22607750 + L1ME4a LINE L1 5290 5616 -554 394 305 191 30 chr1 220056628 220056864 -22607489 - L2 LINE L2 -488 2826 2553 650 249 33 35 chr1 220056933 220057184 -22607169 + L1ME4a LINE L1 5593 5844 -340 1904 156 3 7 chr1 220057184 220057486 -22606867 + AluJo SINE Alu 1 301 -11 650 249 33 35 chr1 220057486 220057568 -22606785 + L1ME4a LINE L1 5844 5925 -259 2300 148 60 0 chr1 220058777 220059161 -22605192 - L1MB7 LINE L1 -231 5953 5547 200 265 88 0 chr1 220059354 220059422 -22604931 - MIR SINE MIR -183 79 6 1449 179 59 103 chr1 220059723 220060066 -22604287 + MLT1B LTR MaLR 1 325 -65 1745 93 115 14 chr1 220060066 220060345 -22604008 + AluY SINE Alu 1 307 -4 1449 179 59 103 chr1 220060345 220060408 -22603945 + MLT1B LTR MaLR 325 389 -1 2218 109 7 0 chr1 220060475 220060777 -22603576 + AluY SINE Alu 1 304 -7 306 141 62 31 chr1 220061030 220061094 -22603259 + AluJo SINE Alu 71 136 -166 235 216 155 35 chr1 220062635 220062751 -22601602 - MIR SINE MIR -64 198 69 2440 77 0 3 chr1 220064099 220064409 -22599944 + AluSg SINE Alu 1 309 -1 24 0 0 0 chr1 220066189 220066213 -22598140 + GC_rich Low_complexity Low_complexity 1 24 0 34 65 0 0 chr1 220066548 220066610 -22597743 + GC_rich Low_complexity Low_complexity 1 62 0 227 240 0 0 chr1 220066738 220066788 -22597565 + G-rich Low_complexity Low_complexity 1 50 0 30 0 0 0 chr1 220066799 220066829 -22597524 + GC_rich Low_complexity Low_complexity 1 30 0 1905 94 47 25 chr1 220068180 220068455 -22595898 + AluSx SINE Alu 1 281 -31 351 0 0 0 chr1 220068458 220068497 -22595856 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 469 188 99 0 chr1 220069649 220069750 -22594603 - MIR3 SINE MIR -5 203 93 866 155 7 7 chr1 220069894 220070036 -22594317 + AluJo SINE Alu 1 142 -170 2037 101 0 4 chr1 220070037 220070304 -22594049 + AluSg SINE Alu 1 266 -44 240 125 0 0 chr1 220070304 220070336 -22594017 + Alu SINE Alu 217 248 -52 1088 162 42 19 chr1 220070336 220070552 -22593801 + AluJo SINE Alu 85 305 -7 1888 131 14 0 chr1 220070796 220071086 -22593267 - AluSx SINE Alu -18 294 1 1848 166 13 7 chr1 220072043 220072350 -22592003 + AluJb SINE Alu 1 309 -3 2189 102 7 7 chr1 220072360 220072763 -22591590 + AluSp SINE Alu 3 405 0 2453 91 0 3 chr1 220073070 220073378 -22590975 + AluSc SINE Alu 1 307 -2 751 246 73 16 chr1 220074018 220074209 -22590144 - MIR SINE MIR -48 214 13 184 290 32 16 chr1 220074443 220074505 -22589848 + L2 LINE L2 3245 3307 -6 204 40 0 0 chr1 220074757 220074782 -22589571 + (TG)n Simple_repeat Simple_repeat 2 26 0 440 119 15 0 chr1 220074810 220074877 -22589476 - L1MA10 LINE L1 -38 6296 6229 2504 64 0 16 chr1 220074880 220075191 -22589162 - AluY SINE Alu -4 307 2 1750 162 3 3 chr1 220076078 220076368 -22587985 + AluJb SINE Alu 11 300 -12 1247 101 6 0 chr1 220076440 220076609 -22587744 + AluSg/x SINE Alu 143 312 0 596 286 236 0 chr1 220076775 220077135 -22587218 - MLT1K LTR MaLR -4 584 140 2054 105 0 7 chr1 220077339 220077633 -22586720 + AluSx SINE Alu 1 292 -20 1973 122 0 20 chr1 220077635 220077939 -22586414 + AluY SINE Alu 1 298 -13 539 233 87 66 chr1 220078239 220078609 -22585744 + MLT1H LTR MaLR 124 547 -2 2268 92 7 0 chr1 220078725 220079030 -22585323 + AluSp SINE Alu 1 307 -6 1923 118 4 0 chr1 220079253 220079575 -22584778 - AluSg SINE Alu 0 323 1 350 98 20 0 chr1 220079578 220079629 -22584724 - Alu SINE Alu -7 295 244 327 49 0 0 chr1 220080498 220080539 -22583814 + (CA)n Simple_repeat Simple_repeat 2 42 0 2044 99 48 3 chr1 220080545 220080839 -22583514 - AluSq SINE Alu -6 307 1 467 268 99 56 chr1 220080954 220081256 -22583097 - MLT1K LTR MaLR -137 451 137 535 60 5 18 chr1 220081348 220081566 -22582787 + AluY SINE Alu 1 309 -3 23 54 0 0 chr1 220081976 220082013 -22582340 + AT_rich Low_complexity Low_complexity 1 37 0 3054 211 64 107 chr1 220082365 220083093 -22581260 - L1ME2 LINE L1 -9 6155 5397 2104 101 10 0 chr1 220083093 220083389 -22580964 - AluSc SINE Alu -10 299 1 3054 211 64 107 chr1 220083389 220083423 -22580930 - L1ME2 LINE L1 -767 5397 5448 1800 120 9 62 chr1 220083423 220083616 -22580737 - AluSx SINE Alu 0 312 141 2300 91 0 0 chr1 220083616 220083925 -22580428 - AluY SINE Alu -2 309 1 1800 120 9 62 chr1 220083925 220084055 -22580298 - AluSx SINE Alu -171 141 6 3054 211 64 107 chr1 220084055 220084149 -22580204 - L1ME2 LINE L1 -715 5449 5352 1957 214 88 49 chr1 220084183 220084716 -22579637 + MLT2B3 LTR ERVL 1 554 0 261 346 19 0 chr1 220084768 220084872 -22579481 + L2 LINE L2 2701 2806 -508 234 336 66 8 chr1 220085044 220085166 -22579187 + L2 LINE L2 2929 3057 -215 2074 104 37 0 chr1 220085429 220085726 -22578627 + AluSx SINE Alu 1 308 -4 315 326 10 0 chr1 220085728 220085826 -22578527 + MIR3 SINE MIR 87 185 -23 1587 147 52 36 chr1 220085830 220086137 -22578216 - AluJo SINE Alu 0 312 1 1750 111 73 0 chr1 220086678 220086965 -22577388 + AluSg SINE Alu 1 306 0 21 82 0 0 chr1 220086984 220087033 -22577320 + AT_rich Low_complexity Low_complexity 1 49 0 647 186 8 16 chr1 220087726 220087850 -22576503 - FLAM_A SINE Alu -9 133 11 212 261 0 0 chr1 220087908 220087954 -22576399 - L3b LINE CR1 -88 1495 1450 551 235 80 80 chr1 220087988 220088324 -22576029 + L1ME4a LINE L1 5778 6113 -8 2052 99 0 7 chr1 220088410 220088694 -22575659 + AluSx SINE Alu 1 282 -30 267 31 0 0 chr1 220088722 220088754 -22575599 + (TG)n Simple_repeat Simple_repeat 1 32 0 3750 156 26 5 chr1 220088917 220089559 -22574794 + L1MB3 LINE L1 5486 6141 -42 1048 76 0 0 chr1 220089560 220089692 -22574661 + AluSq/x SINE Alu 1 132 -180 2045 101 13 36 chr1 220089695 220090001 -22574352 + AluSx SINE Alu 1 299 -13 293 143 0 0 chr1 220090001 220090050 -22574303 + L1MB2 LINE L1 6123 6171 0 1794 125 0 7 chr1 220090139 220090441 -22573912 - AluSc SINE Alu 0 300 1 376 261 25 34 chr1 220090756 220090875 -22573478 + L2 LINE L2 3191 3308 -5 249 269 0 0 chr1 220091085 220091137 -22573216 - L2 LINE L2 0 3313 3262 309 271 257 0 chr1 220091177 220091317 -22573036 + MIR SINE MIR 77 252 -10 207 0 0 0 chr1 220091372 220091395 -22572958 + (C)n Simple_repeat Simple_repeat 1 23 0 376 130 73 3 chr1 220091499 220091578 -22572775 + Alu SINE Alu 235 297 -3 293 143 0 0 chr1 220091578 220091627 -22572726 + L1MB2 LINE L1 6123 6171 0 2198 82 0 0 chr1 220091716 220092019 -22572334 - AluSx SINE Alu 0 303 1 671 80 0 0 chr1 220093563 220093651 -22570702 - AluS SINE Alu -223 89 2 341 375 0 28 chr1 220093651 220093795 -22570558 + MIR SINE MIR 60 199 -63 288 98 0 0 chr1 220094083 220094124 -22570229 + U5 snRNA snRNA 1 41 -75 2286 81 7 0 chr1 220094212 220094510 -22569843 - AluSp SINE Alu -13 300 1 1272 203 71 18 chr1 220094569 220094711 -22569642 - AluJo SINE Alu -16 296 163 2434 59 0 0 chr1 220094711 220095016 -22569337 - AluY SINE Alu -6 305 1 1272 203 71 18 chr1 220095016 220095154 -22569199 - AluJo SINE Alu -149 163 1 2588 146 13 18 chr1 220095476 220095927 -22568426 + L1MB3 LINE L1 5728 6176 -7 684 205 79 0 chr1 220096802 220096929 -22567424 - FRAM SINE Alu -39 137 1 1978 120 0 0 chr1 220097297 220097581 -22566772 + AluSx SINE Alu 1 284 -28 1294 208 108 46 chr1 220097723 220098166 -22566187 + MER110A LTR ERV1 40 491 0 183 373 29 29 chr1 220098359 220098461 -22565892 - MIR SINE MIR -69 139 38 274 125 83 0 chr1 220098557 220098605 -22565748 - MLT1C LTR MaLR 0 467 416 1371 121 70 0 chr1 220098645 220098860 -22565493 + LTR31 LTR ERV1 1 230 -389 431 83 0 0 chr1 220098867 220098927 -22565426 - Alu SINE Alu -251 60 1 2525 140 13 3 chr1 220099081 220099460 -22564893 + LTR31 LTR ERV1 237 619 0 1932 147 5 63 chr1 220099460 220099706 -22564647 - MLT1C LTR MaLR -51 416 196 1710 174 3 0 chr1 220099706 220100000 -22564353 - AluJo SINE Alu -17 295 1 1932 147 5 63 chr1 220100000 220100113 -22564240 - MLT1C LTR MaLR -271 196 78 426 120 74 93 chr1 220100128 220100236 -22564117 - MLT1C LTR MaLR -361 106 1 1788 164 0 0 chr1 220100561 220100842 -22563511 + AluJo SINE Alu 11 291 -21 234 151 19 0 chr1 220101526 220101579 -22562774 - L1MA4 LINE L1 -2 6298 6245 2269 92 0 3 chr1 220101589 220101893 -22562460 + AluSq SINE Alu 1 303 -10 841 251 66 7 chr1 220101924 220102195 -22562158 - L1ME3 LINE L1 -211 5951 5665 1177 157 54 10 chr1 220102356 220102560 -22561793 - AluJb SINE Alu -16 296 84 1629 166 0 54 chr1 220102640 220102732 -22561621 + AluJo SINE Alu 1 96 -216 2297 49 0 33 chr1 220102732 220103036 -22561317 + AluY SINE Alu 1 294 -17 1629 166 0 54 chr1 220103036 220103257 -22561096 + AluJo SINE Alu 96 297 -15 874 284 30 28 chr1 220103272 220103564 -22560789 - L1ME3 LINE L1 -519 5645 5355 1364 191 9 59 chr1 220103564 220103884 -22560469 - AluJo SINE Alu -8 304 1 874 284 30 28 chr1 220103884 220103962 -22560391 - L1ME3 LINE L1 -809 5355 5308 2197 109 0 0 chr1 220103962 220104264 -22560089 - AluSx SINE Alu -10 302 1 874 284 30 28 chr1 220104264 220104280 -22560073 - L1ME3 LINE L1 -856 5308 5294 1627 157 0 11 chr1 220105578 220105852 -22558501 - AluJb SINE Alu -6 306 36 1771 122 3 64 chr1 220105993 220106320 -22558033 + AluSx SINE Alu 1 307 -5 836 154 0 0 chr1 220107687 220107817 -22556536 - FLAM_C SINE Alu -3 130 1 893 260 53 19 chr1 220107886 220108342 -22556011 - MLT2E LTR ERVL -80 548 6 288 294 46 28 chr1 220108479 220108588 -22555765 + MIR SINE MIR 20 130 -78 2172 105 3 3 chr1 220108835 220109141 -22555212 + AluSq SINE Alu 1 306 -7 199 360 0 0 chr1 220109177 220109252 -22555101 + MIR SINE MIR 80 154 -108 722 226 0 0 chr1 220109766 220109899 -22554454 + AluJo SINE Alu 1 133 -169 2149 123 60 26 chr1 220109907 220110257 -22554096 - THE1B LTR MaLR -2 362 1 1155 152 0 0 chr1 220110257 220110422 -22553931 + AluJo SINE Alu 138 302 0 276 77 0 0 chr1 220110456 220110495 -22553858 + (CA)n Simple_repeat Simple_repeat 1 39 0 1256 216 33 23 chr1 220111782 220112083 -22552270 - AluJo SINE Alu -5 307 4 492 267 30 8 chr1 220112217 220112348 -22552005 + MIR SINE MIR 129 262 0 2322 61 0 10 chr1 220113029 220113325 -22551028 + AluY SINE Alu 1 293 -18 1767 98 49 8 chr1 220113328 220113594 -22550759 + AluSg1 SINE Alu 21 297 -12 241 256 43 6 chr1 220113692 220113830 -22550523 - MIR SINE MIR -5 257 49 1982 149 0 0 chr1 220113850 220114158 -22550195 - AluSx SINE Alu -4 308 1 286 246 164 9 chr1 220114244 220114354 -22549999 - L1ME4a LINE L1 -4 6117 5991 680 283 148 28 chr1 220115980 220116344 -22548009 - MLT1L LTR MaLR -14 601 194 294 341 16 24 chr1 220116712 220116838 -22547515 + L2 LINE L2 2688 2812 -502 397 295 94 76 chr1 220116868 220117060 -22547293 + L2 LINE L2 2923 3110 -203 2262 86 3 13 chr1 220117060 220117374 -22546979 - AluSq SINE Alu 0 313 3 397 295 94 76 chr1 220117374 220117564 -22546789 + L2 LINE L2 3110 3312 -1 473 268 45 0 chr1 220117610 220117722 -22546631 + MER5C DNA MER1_type 3 119 -205 1728 151 10 23 chr1 220117749 220118048 -22546305 - AluJo SINE Alu -17 295 1 2088 112 0 7 chr1 220118051 220118346 -22546007 - AluSq SINE Alu -14 299 7 182 186 116 0 chr1 220118483 220118526 -22545827 + MER5C DNA MER1_type 277 324 0 549 258 24 18 chr1 220118721 220118888 -22545465 + MIR SINE MIR 95 262 0 2121 68 0 11 chr1 220119136 220119416 -22544937 - AluY SINE Alu 0 311 35 1756 153 3 7 chr1 220119429 220119737 -22544616 - AluSq SINE Alu -6 307 1 2187 70 40 3 chr1 220119873 220120173 -22544180 + AluSq SINE Alu 1 311 -2 2565 48 0 0 chr1 220120770 220121081 -22543272 + AluY SINE Alu 1 311 0 1964 150 0 3 chr1 220121205 220121518 -22542835 + AluJo SINE Alu 1 312 0 193 322 51 66 chr1 220121528 220121801 -22542552 - L2 LINE L2 -1613 1701 1433 379 333 193 15 chr1 220122175 220122569 -22541784 - L2 LINE L2 0 3272 2809 1117 307 103 58 chr1 220122671 220123713 -22540640 - L2 LINE L2 -733 2581 1493 547 111 0 0 chr1 220123752 220123850 -22540503 - AluJb SINE Alu 0 307 210 196 296 0 0 chr1 220123909 220123953 -22540400 - MIR SINE MIR -164 98 55 276 311 118 0 chr1 220123954 220124073 -22540280 - L2 LINE L2 -1797 1517 1385 203 121 0 0 chr1 220124547 220124580 -22539773 - L2 LINE L2 0 3313 3281 530 261 9 0 chr1 220124650 220124761 -22539592 + L2 LINE L2 3190 3301 -12 1748 208 54 79 chr1 220124763 220125297 -22539056 + MER69 DNA AcHobo 1 521 -2005 383 185 0 0 chr1 220125299 220125364 -22538989 + MER69 DNA AcHobo 2461 2525 -1 360 278 110 106 chr1 220125725 220125970 -22538383 - L2 LINE L2 0 3272 3027 183 241 253 13 chr1 220125961 220126021 -22538332 + L3 LINE CR1 1462 1540 -37 304 236 115 85 chr1 220126021 220126186 -22538167 + MER5B DNA MER1_type 1 179 -10 1886 144 30 0 chr1 220126651 220126950 -22537403 - AluJb SINE Alu -4 308 1 1367 60 0 16 chr1 220126950 220126968 -22537385 - L1PA8 LINE L1 0 6172 6155 278 26 26 0 chr1 220126968 220127007 -22537346 + (TA)n Simple_repeat Simple_repeat 1 40 0 1367 60 0 16 chr1 220127007 220127170 -22537183 - L1PA8 LINE L1 -17 6155 5994 847 181 0 0 chr1 220127188 220127321 -22537032 - FLAM_A SINE Alu 0 133 1 3683 150 35 19 chr1 220127329 220127630 -22536723 - L1MB7 LINE L1 0 6184 5889 2498 75 0 3 chr1 220127630 220127935 -22536418 - AluY SINE Alu -7 304 1 3683 150 35 19 chr1 220127935 220128311 -22536042 - L1MB7 LINE L1 -295 5889 5496 2125 121 21 0 chr1 220128311 220128601 -22535752 - AluSx SINE Alu -16 296 1 2412 88 3 0 chr1 220128621 220128927 -22535426 - AluY SINE Alu -4 307 1 1624 161 30 37 chr1 220128947 220129246 -22535107 - AluJo SINE Alu -15 297 1 306 0 0 0 chr1 220129260 220129294 -22535059 + (ATATG)n Simple_repeat Simple_repeat 2 35 0 1709 184 26 26 chr1 220129296 220129677 -22534676 - L1MB7 LINE L1 -1184 4962 4582 270 216 0 0 chr1 220129875 220129926 -22534427 - L2 LINE L2 -12 3260 3210 2365 115 0 0 chr1 220129977 220130281 -22534072 + AluSx SINE Alu 1 304 -8 330 257 38 0 chr1 220130412 220130517 -22533836 - L1ME4a LINE L1 -28 6093 5985 308 255 82 10 chr1 220130536 220130634 -22533719 - MIR SINE MIR 0 262 158 189 107 0 0 chr1 220130634 220130662 -22533691 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 464 338 5 45 chr1 220130668 220130866 -22533487 - L2 LINE L2 -17 3296 3107 1195 238 75 49 chr1 220130956 220131367 -22532986 + LTR16A LTR ERVL 22 443 -7 1304 264 32 0 chr1 220131374 220131722 -22532631 + HERV16 LTR ERVL 1 359 -4637 2061 110 0 21 chr1 220131817 220131947 -22532406 + AluSg SINE Alu 1 132 -178 1987 122 49 26 chr1 220131947 220132251 -22532102 + AluSx SINE Alu 1 311 -1 2061 110 0 21 chr1 220132251 220132402 -22531951 + AluSg SINE Alu 132 276 -34 1665 268 89 53 chr1 220132402 220133174 -22531179 + HERV16 LTR ERVL 553 1352 -3644 2398 77 14 3 chr1 220133371 220133668 -22530685 + AluY SINE Alu 2 301 -10 3600 283 65 61 chr1 220133693 220133999 -22530354 + HERV16 LTR ERVL 1665 1968 -3028 1822 130 46 7 chr1 220133999 220134284 -22530069 - AluSx SINE Alu -16 296 1 3600 283 65 61 chr1 220134284 220134659 -22529694 + HERV16 LTR ERVL 1968 2340 -2656 2235 122 0 0 chr1 220134659 220134953 -22529400 + AluSg SINE Alu 1 294 -16 3600 283 65 61 chr1 220134953 220135257 -22529096 + HERV16 LTR ERVL 2340 2641 -2355 2425 68 27 3 chr1 220135257 220135552 -22528801 + AluY SINE Alu 1 302 -9 3600 283 65 61 chr1 220135552 220136848 -22527505 + HERV16 LTR ERVL 2641 3688 -1308 575 288 55 0 chr1 220136895 220137058 -22527295 + HERV16 LTR ERVL 4161 4332 -1432 1756 138 114 151 chr1 220137273 220137414 -22526939 + LOR1a LTR ERV1 1 146 -351 2410 86 0 10 chr1 220137414 220137717 -22526636 + AluSg SINE Alu 1 300 -10 1756 138 114 151 chr1 220137717 220137737 -22526616 + LOR1a LTR ERV1 146 165 -332 1938 119 13 75 chr1 220137737 220137869 -22526484 + AluSx SINE Alu 1 140 -172 1543 138 157 11 chr1 220137869 220138137 -22526216 + AluSg1 SINE Alu 1 307 -2 1938 119 13 75 chr1 220138137 220138322 -22526031 + AluSx SINE Alu 140 298 -14 1756 138 114 151 chr1 220138322 220138675 -22525678 + LOR1a LTR ERV1 165 497 0 892 334 20 41 chr1 220138770 220138912 -22525441 + HERV16 LTR ERVL 4782 4926 -838 1602 197 35 3 chr1 220138912 220139196 -22525157 + AluJb SINE Alu 1 293 -19 892 334 20 41 chr1 220139196 220139562 -22524791 + HERV16 LTR ERVL 4926 5279 -485 279 362 34 0 chr1 220139601 220139778 -22524575 + HERV16 LTR ERVL 4809 4991 -5 940 238 89 6 chr1 220139784 220140176 -22524177 + LTR16A LTR ERVL 1 449 -1 3875 247 73 41 chr1 220140176 220140459 -22523894 - L2 LINE L2 -281 3032 2759 2325 107 0 19 chr1 220140459 220140776 -22523577 + AluSx SINE Alu 1 311 -1 3875 247 73 41 chr1 220140776 220141297 -22523056 - L2 LINE L2 -554 2759 2256 2686 39 0 0 chr1 220141297 220141603 -22522750 + AluY SINE Alu 1 306 -5 3875 247 73 41 chr1 220141603 220142088 -22522265 - L2 LINE L2 -1057 2256 1683 258 227 15 15 chr1 220142041 220142107 -22522246 - MIR SINE MIR -94 168 103 * 1616 143 53 0 chr1 220142107 220142352 -22522001 + AluJb SINE Alu 1 258 -54 744 121 0 0 chr1 220142632 220142731 -22521622 - AluS SINE Alu -212 100 2 721 313 13 0 chr1 220142734 220142958 -22521395 - L1ME LINE L1 -418 5703 5477 2187 116 33 0 chr1 220143567 220143868 -22520485 - AluSx SINE Alu -1 311 1 1200 94 0 0 chr1 220143873 220144050 -22520303 - AluSp SINE Alu 0 313 137 540 192 131 0 chr1 220144108 220144207 -22520146 + FLAM_A SINE Alu 6 117 -25 2334 101 3 0 chr1 220144251 220144547 -22519806 + AluSp SINE Alu 5 301 -12 866 123 8 0 chr1 220144784 220144906 -22519447 - FLAM_C SINE Alu -20 123 1 437 255 37 78 chr1 220144913 220145042 -22519311 - L1ME LINE L1 -299 5822 5706 1799 180 3 3 chr1 220145042 220145331 -22519022 + AluJo SINE Alu 1 289 -23 437 255 37 78 chr1 220145331 220145444 -22518909 - L1ME LINE L1 -415 5706 5590 314 312 156 30 chr1 220145957 220146226 -22518127 + L2 LINE L2 2326 2628 -686 422 339 69 59 chr1 220146334 220146738 -22517615 + L2 LINE L2 2857 3264 -8 2258 130 0 0 chr1 220146786 220147087 -22517266 - AluSx SINE Alu -9 303 3 2450 86 0 7 chr1 220147401 220147705 -22516648 + AluSx SINE Alu 1 302 -10 1857 138 0 98 chr1 220149214 220149415 -22514938 + AluJo SINE Alu 1 220 -92 2313 103 3 0 chr1 220149415 220149705 -22514648 - AluSx SINE Alu -21 291 1 1857 138 0 98 chr1 220149705 220149720 -22514633 + AluJo SINE Alu 220 235 -77 2317 68 4 4 chr1 220149720 220150025 -22514328 - AluY SINE Alu 0 305 1 1857 138 0 98 chr1 220150025 220150132 -22514221 + AluJo SINE Alu 235 294 -18 2023 159 10 0 chr1 220150138 220150446 -22513907 + AluSx SINE Alu 1 311 -1 230 274 217 9 chr1 220151952 220152058 -22512295 + MIR SINE MIR 56 183 -79 616 313 28 21 chr1 220152444 220152689 -22511664 - MIR SINE MIR -14 248 4 2480 93 0 0 chr1 220153172 220153484 -22510869 - AluSx SINE Alu 0 312 1 768 242 169 79 chr1 220153639 220154106 -22510247 + MLT1J LTR MaLR 1 509 -2 1882 164 0 23 chr1 220154427 220154731 -22509622 + AluJo SINE Alu 1 297 -15 2453 89 0 3 chr1 220155373 220155677 -22508676 + AluSg SINE Alu 1 303 -7 244 193 18 18 chr1 220155682 220155739 -22508614 - MLT1K LTR MaLR -12 576 520 5316 0 0 0 chr1 220155860 220155879 -22508474 + L1PA10 LINE L1 5335 5353 -815 1944 150 3 19 chr1 220155879 220156193 -22508160 + AluSx SINE Alu 1 309 -3 5316 0 0 0 chr1 220156193 220156265 -22508088 + L1PA10 LINE L1 5353 5424 -744 2519 76 3 0 chr1 220156265 220156568 -22507785 + AluSp SINE Alu 3 306 -7 2503 74 0 0 chr1 220156568 220156864 -22507489 + AluY SINE Alu 1 296 -15 5316 0 0 0 chr1 220156864 220156961 -22507392 + L1PA10 LINE L1 5423 5519 -649 2312 113 0 10 chr1 220156961 220157271 -22507082 + AluSx SINE Alu 1 307 -5 5316 0 0 0 chr1 220157271 220157561 -22506792 + L1PA10 LINE L1 5519 5808 -360 2356 109 3 6 chr1 220157561 220157872 -22506481 + AluSx SINE Alu 1 310 -2 5316 0 0 0 chr1 220157872 220157934 -22506419 + L1PA10 LINE L1 5808 5869 -299 2851 13 0 0 chr1 220157934 220158240 -22506113 + AluYa5 SINE Alu 2 307 -4 5316 0 0 0 chr1 220158240 220158599 -22505754 + L1PA10 LINE L1 5869 6168 0 2365 87 0 7 chr1 220158622 220158922 -22505431 - AluSc SINE Alu -11 298 1 376 261 25 34 chr1 220159237 220159356 -22504997 + L2 LINE L2 3191 3308 -5 247 269 0 0 chr1 220159566 220159618 -22504735 - L2 LINE L2 0 3313 3262 305 271 257 0 chr1 220159658 220159798 -22504555 + MIR SINE MIR 77 252 -10 2239 116 7 7 chr1 220160527 220160837 -22503516 + AluSx SINE Alu 1 310 -2 2185 149 7 0 chr1 220161407 220161716 -22502637 - AluJo SINE Alu -1 311 1 1759 171 3 19 chr1 220161716 220162026 -22502327 - AluJo SINE Alu -7 305 1 2294 105 3 0 chr1 220162391 220162697 -22501656 - AluSp SINE Alu -6 307 1 373 150 0 103 chr1 220163084 220163167 -22501186 - MER58 DNA MER1_type -5 2415 2325 2481 74 0 7 chr1 220163167 220163477 -22500876 - AluY SINE Alu -1 310 3 373 150 0 103 chr1 220163477 220163515 -22500838 - MER58 DNA MER1_type -95 2325 100 1003 198 0 0 chr1 220163522 220163694 -22500659 + FRAM SINE Alu 1 170 -6 2348 107 0 3 chr1 220163698 220163997 -22500356 + AluSc SINE Alu 1 298 -11 881 286 0 0 chr1 220164144 220164354 -22499999 + MIR SINE MIR 45 254 -8 2388 83 7 10 chr1 220166800 220167100 -22497253 - AluSq SINE Alu -13 300 2 2067 159 0 0 chr1 220167107 220167415 -22496938 - AluJb SINE Alu 0 312 5 1373 182 47 30 chr1 220167457 220167754 -22496599 + AluJo SINE Alu 1 302 -10 2399 84 7 0 chr1 220167764 220168072 -22496281 - AluY SINE Alu -1 310 1 309 243 81 27 chr1 220168077 220168188 -22496165 + MER103 DNA DNA 48 164 -2 2115 113 4 0 chr1 220168534 220168829 -22495524 - AluSx SINE Alu 0 304 9 1993 78 52 75 chr1 220168857 220169165 -22495188 - AluY SINE Alu -10 301 1 505 211 383 0 chr1 220169192 220169367 -22494986 + MIR SINE MIR 21 262 0 2265 124 0 9 chr1 220170790 220171105 -22493248 - AluSx SINE Alu 0 312 1 424 235 157 13 chr1 220171441 220171594 -22492759 - MER104 DNA Tc2 0 180 6 2106 130 10 0 chr1 220171736 220172043 -22492310 + AluJo SINE Alu 1 310 -2 368 133 0 27 chr1 220172045 220172120 -22492233 + (GGAGA)n Simple_repeat Simple_repeat 2 74 0 216 0 0 0 chr1 220172140 220172164 -22492189 + (CAAAG)n Simple_repeat Simple_repeat 2 25 0 1837 146 0 28 chr1 220172817 220173104 -22491249 - AluSx SINE Alu -16 296 18 891 236 0 6 chr1 220173345 220173519 -22490834 + FAM SINE Alu 1 173 -2 2268 129 0 0 chr1 220173521 220173824 -22490529 + AluSx SINE Alu 1 303 -9 357 277 57 14 chr1 220173861 220174002 -22490351 - L1ME4a LINE L1 -15 6106 5960 2061 145 0 0 chr1 220174179 220174475 -22489878 + AluJo SINE Alu 1 296 -16 505 310 185 38 chr1 220174475 220174766 -22489587 - L1ME4a LINE L1 -243 5927 5680 1459 164 137 0 chr1 220174766 220175029 -22489324 - AluJb SINE Alu -3 299 1 505 310 185 38 chr1 220175029 220175288 -22489065 - L1ME4a LINE L1 -490 5680 5296 419 182 85 61 chr1 220175300 220175434 -22488919 - L1ME4a LINE L1 -840 5306 5166 2331 97 13 0 chr1 220175434 220175732 -22488621 - AluSg SINE Alu -8 302 1 419 182 85 61 chr1 220175732 220175762 -22488591 - L1ME4a LINE L1 -980 5166 5138 247 264 46 73 chr1 220175737 220176040 -22488313 - L1MC5 LINE L1 -36 7925 7631 * 2171 117 10 7 chr1 220177179 220177477 -22486876 - AluSx SINE Alu -13 299 1 2278 98 6 19 chr1 220177480 220177796 -22486557 - AluSx SINE Alu 0 312 1 889 233 103 7 chr1 220179220 220179681 -22484672 + MER21B LTR ERV1 199 730 -133 186 103 0 0 chr1 220179857 220179886 -22484467 + (TTTCG)n Simple_repeat Simple_repeat 2 30 0 1309 76 87 5 chr1 220179886 220180071 -22484282 - L1PA10 LINE L1 -19 6149 5950 2248 85 0 3 chr1 220180458 220180753 -22483600 + AluY SINE Alu 1 294 -17 1544 167 27 23 chr1 220181059 220181228 -22483125 - AluJo SINE Alu -6 306 134 2360 73 0 0 chr1 220181228 220181530 -22482823 - AluY SINE Alu -9 302 1 1544 167 27 23 chr1 220181530 220181660 -22482693 - AluJo SINE Alu -178 134 6 1684 170 17 0 chr1 220181667 220181956 -22482397 - AluJo SINE Alu -18 294 1 803 257 0 6 chr1 220182023 220182194 -22482159 - MIR SINE MIR -89 173 4 252 229 115 31 chr1 220182241 220182337 -22482016 + L2 LINE L2 3198 3301 -12 2079 107 0 10 chr1 220185768 220186076 -22478277 - AluSp SINE Alu -3 310 6 236 200 20 0 chr1 220186575 220186625 -22477728 + G-rich Low_complexity Low_complexity 3 53 0 2017 129 3 7 chr1 220187162 220187465 -22476888 - AluSx SINE Alu -10 302 1 190 200 50 0 chr1 220188388 220188428 -22475925 + L2 LINE L2 3267 3308 -5 442 324 103 32 chr1 220189076 220189551 -22474802 - L2 LINE L2 -1016 2298 1790 774 229 68 5 chr1 220189821 220190092 -22474261 - MER46C DNA MER2_type 0 338 14 1878 148 11 43 chr1 220190328 220190478 -22473875 + L1PA16 LINE L1 5806 5959 -207 2193 109 120 38 chr1 220190478 220190871 -22473482 + MSTA LTR MaLR 3 427 -1 1878 148 11 43 chr1 220190871 220191092 -22473261 + L1PA16 LINE L1 5959 6165 -1 389 247 11 11 chr1 220191255 220191348 -22473005 + L2 LINE L2 3138 3230 -42 288 0 0 0 chr1 220191553 220191585 -22472768 + (CA)n Simple_repeat Simple_repeat 2 33 0 1816 133 0 24 chr1 220192079 220192395 -22471958 - AluSx SINE Alu 0 312 9 623 153 17 0 chr1 220192827 220192945 -22471408 - FRAM SINE Alu -8 168 49 2098 108 0 22 chr1 220194825 220195140 -22469213 - AluSg SINE Alu -2 308 1 1158 180 22 45 chr1 220195751 220196018 -22468335 - AluJo SINE Alu -51 261 1 623 124 0 0 chr1 220196070 220196167 -22468186 - AluSp/q SINE Alu -7 306 210 225 329 0 61 chr1 220196308 220196390 -22467963 - MIR SINE MIR -116 92 16 2282 84 19 7 chr1 220197083 220197392 -22466961 - AluSq SINE Alu 0 313 1 2153 78 4 4 chr1 220197843 220198160 -22466193 - AluY SINE Alu 0 317 1 191 348 100 41 chr1 220199410 220199901 -22464452 + L2 LINE L2 1794 2313 -1001 1495 62 0 0 chr1 220199931 220200124 -22464229 - AluY SINE Alu 0 311 119 1082 175 11 49 chr1 220200832 220201118 -22463235 - AluY SINE Alu -36 275 1 468 221 133 0 chr1 220201183 220201341 -22463012 + HAL1 LINE L1 1987 2165 -342 1332 181 0 0 chr1 220201341 220201579 -22462774 + AluSx SINE Alu 1 238 -74 1503 0 0 0 chr1 220202246 220202413 -22461940 + (G)n Simple_repeat Simple_repeat 1 167 0 763 163 8 0 chr1 220202531 220202654 -22461699 - FLAM_C SINE Alu -9 124 1 1892 105 3 27 chr1 220202662 220202956 -22461397 - AluSc SINE Alu -22 287 1 2267 70 13 0 chr1 220202956 220203257 -22461096 - AluY SINE Alu -4 307 3 1995 134 0 10 chr1 220203259 220203565 -22460788 - AluSx SINE Alu -9 303 1 180 298 70 0 chr1 220203565 220203622 -22460731 + L2 LINE L2 2686 2746 -568 196 316 26 61 chr1 220203702 220203816 -22460537 + L2 LINE L2 2924 3033 -239 372 258 23 76 chr1 220204202 220204334 -22460019 + MIR SINE MIR 33 157 -105 1716 171 0 3 chr1 220204425 220204712 -22459641 - AluJo SINE Alu -15 297 12 2012 102 17 20 chr1 220204832 220205126 -22459227 + AluSg SINE Alu 1 293 -17 1150 135 47 5 chr1 220205778 220205971 -22458382 + AluSg/x SINE Alu 87 287 -25 2303 84 3 0 chr1 220205994 220206293 -22458060 - AluSg SINE Alu -10 300 1 22 35 0 0 chr1 220208021 220208050 -22456303 + AT_rich Low_complexity Low_complexity 1 29 0 661 274 63 6 chr1 220208407 220208582 -22455771 + MIR SINE MIR 4 188 -74 980 161 0 0 chr1 220208595 220208750 -22455603 + AluSx SINE Alu 1 155 -157 2985 128 61 80 chr1 220208750 220208839 -22455514 - LTR14B LTR ERVK 0 608 519 2111 82 14 7 chr1 220208839 220209130 -22455223 + AluY SINE Alu 1 293 -18 2985 128 61 80 chr1 220209130 220209643 -22454710 - LTR14B LTR ERVK -89 519 17 2396 311 32 38 chr1 220209646 220209957 -22454396 - HERVKC4 LTR ERVK -7 7377 7066 2478 46 0 0 chr1 220209957 220210262 -22454091 - AluY SINE Alu -6 305 1 2396 311 32 38 chr1 220210262 220212046 -22452307 - HERVKC4 LTR ERVK -318 7066 3528 * 6863 93 15 3 chr1 220212035 220212985 -22451368 - HERVK14 LTR ERVK -1633 4312 3352 407 244 51 26 chr1 220212987 220213143 -22451210 + L1M4 LINE L1 3805 3964 -2182 7953 95 104 32 chr1 220213168 220214459 -22449894 - SVA Other Other 0 1386 3 14787 103 4 17 chr1 220214487 220216525 -22447828 - HERVK14 LTR ERVK -2580 3365 1353 8392 113 8 21 chr1 220216524 220216746 -22447607 - HERVK14 LTR ERVK -4745 1200 977 * 297 0 0 0 chr1 220216746 220216779 -22447574 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2137 44 3 58 chr1 220216780 220217075 -22447278 - AluY SINE Alu -32 279 1 8392 113 8 21 chr1 220217075 220217888 -22446465 - HERVK14 LTR ERVK -4968 977 178 2343 82 0 0 chr1 220217888 220218192 -22446161 + AluY SINE Alu 1 304 -7 8392 113 8 21 chr1 220218192 220218368 -22445985 - HERVK14 LTR ERVK -5767 178 1 3165 116 68 86 chr1 220218368 220218971 -22445382 - LTR14B LTR ERVK 0 608 17 2031 105 3 7 chr1 220218997 220219283 -22445070 + AluSx SINE Alu 12 296 -16 1548 178 39 14 chr1 220219286 220219646 -22444707 + L1M4 LINE L1 4864 5232 -914 461 221 221 0 chr1 220219646 220219759 -22444594 + FLAM_A SINE Alu 1 138 -4 2040 102 3 16 chr1 220219765 220220069 -22444284 + AluSq SINE Alu 9 308 -5 557 316 41 9 chr1 220220311 220220529 -22443824 + MIR SINE MIR 7 231 -31 1196 90 0 0 chr1 220221030 220221185 -22443168 - AluSq SINE Alu -158 155 1 38 51 0 0 chr1 220221294 220221353 -22443000 + AT_rich Low_complexity Low_complexity 1 59 0 2048 119 7 0 chr1 220221370 220221665 -22442688 - AluSx SINE Alu -12 300 4 2232 243 113 35 chr1 220221665 220222640 -22441713 - HAL1 LINE L1 -763 1744 693 348 216 135 54 chr1 220222659 220222770 -22441583 - L1MC4 LINE L1 -21 8021 7902 313 344 0 0 chr1 220222772 220222862 -22441491 - L1MC4 LINE L1 -1339 6703 6614 1389 217 51 53 chr1 220222886 220222924 -22441429 - L1MC4 LINE L1 -149 7893 7856 599 53 13 0 chr1 220222924 220222999 -22441354 - MADE1 DNA Mariner 0 80 5 1389 217 51 53 chr1 220222999 220223330 -22441023 - L1MC4 LINE L1 -186 7856 7523 2180 96 3 7 chr1 220223330 220223631 -22440722 - AluSp SINE Alu -13 300 1 1389 217 51 53 chr1 220223631 220223731 -22440622 - L1MC4 LINE L1 -519 7523 7424 2033 131 0 0 chr1 220224145 220224443 -22439910 + AluSx SINE Alu 11 308 -4 644 149 0 52 chr1 220224443 220224577 -22439776 - L1MB7 LINE L1 -9 6175 6049 2411 169 26 39 chr1 220224577 220225067 -22439286 - MER66B LTR ERV1 0 486 3 791 212 76 34 chr1 220225800 220225932 -22438421 - MER5C DNA MER1_type 0 324 176 1614 140 58 4 chr1 220225932 220226210 -22438143 + AluJb SINE Alu 2 294 -18 791 212 76 34 chr1 220226210 220226313 -22438040 - MER5C DNA MER1_type -148 176 79 24 0 0 0 chr1 220226544 220226568 -22437785 + GC_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr1 220226597 220226642 -22437711 + GC_rich Low_complexity Low_complexity 1 45 0 2611 69 116 12 chr1 220226945 220227351 -22437002 - LTR7 LTR ERV1 -2 448 1 367 187 6 170 chr1 220227589 220227760 -22436593 + MER69A DNA AcHobo 34 176 -1 528 216 236 20 chr1 220228235 220228489 -22435864 - L2 LINE L2 -98 3215 2907 229 202 155 70 chr1 220228819 220228948 -22435405 + LTR41 LTR ERVL 118 257 -516 365 248 269 7 chr1 220229321 220229470 -22434883 + MIR3 SINE MIR 17 204 -4 1480 144 130 22 chr1 220230490 220230760 -22433593 + AluJo SINE Alu 1 299 -3 1766 128 22 45 chr1 220231611 220231923 -22432430 - AluJb SINE Alu -7 305 1 1921 139 13 10 chr1 220232381 220232684 -22431669 + AluSq SINE Alu 1 304 -9 21 36 0 0 chr1 220232695 220232723 -22431630 + AT_rich Low_complexity Low_complexity 1 28 0 226 337 11 0 chr1 220233077 220233169 -22431184 - MIR SINE MIR -127 135 43 540 332 118 10 chr1 220234617 220234930 -22429423 - L2 LINE L2 0 3272 2926 557 298 123 55 chr1 220235072 220235190 -22429163 - L2 LINE L2 -499 2815 2706 1596 129 17 58 chr1 220235190 220235326 -22429027 + AluSx SINE Alu 13 153 -159 2542 40 0 0 chr1 220235326 220235626 -22428727 + AluY SINE Alu 11 310 -1 1596 129 17 58 chr1 220235626 220235784 -22428569 + AluSx SINE Alu 153 295 -17 557 298 123 55 chr1 220235784 220236105 -22428248 - L2 LINE L2 -608 2706 2346 383 224 161 14 chr1 220236169 220236312 -22428041 - MLT1J LTR MaLR -339 172 9 2173 86 36 3 chr1 220236457 220236758 -22427595 - AluSx SINE Alu -1 311 1 230 307 30 102 chr1 220236965 220237327 -22427026 + L2 LINE L2 2890 3225 -47 2222 101 0 3 chr1 220237618 220237916 -22426437 - AluSx SINE Alu -15 297 1 1756 128 39 7 chr1 220237933 220238214 -22426139 - AluJb SINE Alu -3 309 20 502 230 9 9 chr1 220239419 220239532 -22424821 - MIR SINE MIR -98 164 52 707 185 15 8 chr1 220239571 220239701 -22424652 - FLAM_C SINE Alu -2 131 1 226 294 24 12 chr1 220241773 220241858 -22422495 + L3b LINE CR1 1144 1229 -354 225 286 48 48 chr1 220242037 220242163 -22422190 - L2 LINE L2 -15 3257 3132 1784 150 54 0 chr1 220242552 220242846 -22421507 + AluSx SINE Alu 1 310 -2 1141 216 24 8 chr1 220243941 220244191 -22420162 + L1MB8 LINE L1 5920 6173 -5 2246 92 0 0 chr1 220244435 220244727 -22419626 + AluSc SINE Alu 2 293 -16 329 183 43 78 chr1 220244876 220244991 -22419362 + L1MCa LINE L1 1971 2081 -4345 349 381 29 7 chr1 220245716 220245855 -22418498 - MIR SINE MIR -72 190 49 228 279 186 23 chr1 220246009 220246138 -22418215 - L2 LINE L2 -1 3271 3122 2145 91 3 14 chr1 220246163 220246460 -22417893 + AluSq SINE Alu 1 294 -19 2134 108 3 0 chr1 220246840 220247135 -22417218 - AluSx SINE Alu -16 296 1 1413 154 50 161 chr1 220247190 220247574 -22416779 + MER58B DNA MER1_type 1 341 0 2086 132 7 0 chr1 220247637 220247947 -22416406 + AluSx SINE Alu 1 312 0 1787 126 54 0 chr1 220248628 220248906 -22415447 + AluSg1 SINE Alu 1 293 -16 1804 178 87 21 chr1 220248906 220249361 -22414992 - L1M3 LINE L1 -510 5670 5190 1133 144 0 6 chr1 220249361 220249528 -22414825 - FAM SINE Alu -9 166 1 1804 178 87 21 chr1 220249528 220249551 -22414802 - L1M3 LINE L1 -990 5190 5170 926 170 44 0 chr1 220249725 220249884 -22414469 + FRAM SINE Alu 1 163 -13 2257 100 0 0 chr1 220249884 220250184 -22414169 + AluY SINE Alu 1 300 -11 2455 68 0 3 chr1 220250186 220250496 -22413857 + AluY SINE Alu 1 309 -2 2299 83 0 3 chr1 220250496 220250796 -22413557 + AluSc SINE Alu 1 300 -9 180 0 0 0 chr1 220250961 220250981 -22413372 + (A)n Simple_repeat Simple_repeat 1 20 0 694 255 148 26 chr1 220251209 220251519 -22412834 - L2 LINE L2 -5 3267 2920 1615 168 0 76 chr1 220251599 220251754 -22412599 - AluJo SINE Alu -21 291 171 2536 59 0 0 chr1 220251754 220252060 -22412293 - AluY SINE Alu -5 306 1 1615 168 0 76 chr1 220252060 220252219 -22412134 - AluJo SINE Alu -141 171 1 628 157 33 8 chr1 220252501 220252622 -22411731 + L1MC3 LINE L1 7469 7592 -193 1520 198 58 24 chr1 220252632 220252683 -22411670 + L1MB1 LINE L1 5777 5825 -343 1893 153 0 16 chr1 220252683 220252996 -22411357 + AluJb SINE Alu 1 308 -4 1520 198 58 24 chr1 220252996 220253323 -22411030 + L1MB1 LINE L1 5825 6168 0 796 141 94 31 chr1 220253325 220253516 -22410837 + L1MC3 LINE L1 7573 7775 -10 326 247 82 0 chr1 220253531 220253628 -22410725 + L1ME4a LINE L1 6006 6110 -11 2152 108 0 7 chr1 220253887 220254192 -22410161 - AluSx SINE Alu -9 303 1 463 309 46 41 chr1 220254269 220254638 -22409715 - L1ME4a LINE L1 -11 6110 5740 343 267 44 30 chr1 220254661 220254796 -22409557 - L2 LINE L2 -1 3312 3176 186 299 65 26 chr1 220254785 220254862 -22409491 + MIR SINE MIR 142 221 -41 * 324 0 0 0 chr1 220255739 220255775 -22408578 + (TG)n Simple_repeat Simple_repeat 2 37 0 600 224 153 9 chr1 220256877 220257105 -22407248 - LTR37A LTR ERV1 -89 337 77 307 192 110 14 chr1 220257289 220257362 -22406991 - L1ME4a LINE L1 -1 6120 6041 543 225 93 71 chr1 220257413 220257652 -22406701 - L1ME3A LINE L1 -55 6115 5883 2263 92 0 3 chr1 220257652 220257956 -22406397 - AluSx SINE Alu -9 303 1 543 225 93 71 chr1 220257956 220257974 -22406379 - L1ME3A LINE L1 -287 5883 5867 2120 116 0 7 chr1 220257974 220258276 -22406077 - AluSx SINE Alu -12 300 1 543 225 93 71 chr1 220258276 220258381 -22405972 - L1ME3A LINE L1 -303 5867 5725 390 223 48 19 chr1 220259447 220259550 -22404803 + L2 LINE L2 3205 3310 -3 186 296 100 52 chr1 220259555 220259785 -22404568 - L2 LINE L2 -173 3099 2859 315 188 40 50 chr1 220260432 220260533 -22403820 + MIR SINE MIR 135 234 -28 240 78 31 172 chr1 220264147 220264211 -22400142 + LTR49 LTR ERV1 161 215 -380 2001 181 60 50 chr1 220266667 220267099 -22397254 + LTR22B LTR ERVK 1 440 -52 2179 81 14 0 chr1 220267099 220267382 -22396971 - AluY SINE Alu -23 288 2 2001 181 60 50 chr1 220267382 220267431 -22396922 + LTR22B LTR ERVK 440 487 -5 2085 129 10 0 chr1 220267731 220268041 -22396312 - AluSq SINE Alu 0 313 1 1976 128 17 3 chr1 220268575 220268873 -22395480 + AluSx SINE Alu 1 302 -10 267 300 25 0 chr1 220269468 220269548 -22394805 + MIR SINE MIR 119 200 -62 181 196 43 22 chr1 220269856 220269902 -22394451 + L2 LINE L2 3210 3256 -16 744 282 226 12 chr1 220270273 220270688 -22393665 - L2 LINE L2 -1 3312 2809 1382 309 127 15 chr1 220270708 220271394 -22392959 - L2 LINE L2 -665 2649 1887 794 214 11 17 chr1 220271573 220271751 -22392602 + MIR SINE MIR 48 224 -38 818 156 37 0 chr1 220272537 220272672 -22391681 - FLAM_C SINE Alu -3 140 1 180 0 0 0 chr1 220272690 220272710 -22391643 + (T)n Simple_repeat Simple_repeat 1 20 0 729 67 0 0 chr1 220272720 220272809 -22391544 + AluSq/x SINE Alu 16 104 -209 214 283 17 0 chr1 220273500 220273560 -22390793 + L2 LINE L2 3247 3307 -6 22 0 0 0 chr1 220273735 220273757 -22390596 + GC_rich Low_complexity Low_complexity 1 22 0 2373 84 3 0 chr1 220274674 220274984 -22389369 - AluSq SINE Alu -2 311 1 205 216 0 0 chr1 220275270 220275307 -22389046 + (TA)n Simple_repeat Simple_repeat 2 38 0 447 19 0 0 chr1 220275308 220275360 -22388993 + (TG)n Simple_repeat Simple_repeat 1 52 0 2084 122 6 6 chr1 220275994 220276305 -22388048 - AluSx SINE Alu -1 311 1 1376 178 52 0 chr1 220276725 220277011 -22387342 + MER33 DNA MER1_type 23 323 -1 313 297 63 18 chr1 220277496 220277607 -22386746 - MIR SINE MIR -29 233 118 208 0 0 0 chr1 220279407 220279430 -22384923 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1768 138 25 0 chr1 220279430 220279706 -22384647 - AluJo SINE Alu -1 305 1 2256 98 7 0 chr1 220279994 220280300 -22384053 + AluSx SINE Alu 1 308 -4 902 202 108 9 chr1 220280316 220280529 -22383824 - MIR SINE MIR -25 237 4 270 247 187 67 chr1 220280593 220280743 -22383610 - L2 LINE L2 -29 3284 3117 1953 155 3 0 chr1 220281198 220281507 -22382846 + AluJo SINE Alu 1 310 -2 193 295 51 0 chr1 220282562 220282640 -22381713 - MIR SINE MIR -78 130 49 410 247 27 53 chr1 220284439 220284589 -22379764 - MIR SINE MIR -54 208 63 2103 100 6 41 chr1 220284753 220285073 -22379280 + AluSx SINE Alu 1 309 -3 225 219 78 0 chr1 220285853 220285936 -22378417 - MIR SINE MIR -57 205 112 596 186 48 90 chr1 220285977 220286012 -22378341 + MER104 DNA MER2_type 1 36 -1862 2229 91 7 3 chr1 220286012 220286320 -22378033 - AluSg SINE Alu -1 309 1 596 186 48 90 chr1 220286320 220286427 -22377926 + MER104 DNA MER2_type 36 136 -1762 2310 70 0 7 chr1 220286427 220286725 -22377628 + AluSp SINE Alu 1 296 -17 596 186 48 90 chr1 220286725 220286769 -22377584 + MER104 DNA MER2_type 136 180 0 268 265 214 0 chr1 220287951 220288049 -22376304 - L2 LINE L2 -4 3268 3150 711 201 30 0 chr1 220288759 220288928 -22375425 - MER104 DNA Tc2 0 180 7 2209 99 0 10 chr1 220289041 220289353 -22375000 - AluSg1 SINE Alu 0 309 1 380 189 0 11 chr1 220290528 220290618 -22373735 + (CA)n Simple_repeat Simple_repeat 2 90 0 1744 79 9 0 chr1 220291160 220291387 -22372966 - AluSq SINE Alu -78 235 7 1942 154 6 6 chr1 220292141 220292453 -22371900 + AluJb SINE Alu 1 312 0 2250 103 3 3 chr1 220292996 220293308 -22371045 - AluSq SINE Alu -1 312 1 505 276 47 24 chr1 220293500 220293670 -22370683 - MIR SINE MIR -54 208 35 413 253 118 56 chr1 220294489 220294667 -22369686 - MIR3 SINE MIR -11 197 9 225 0 0 0 chr1 220295221 220295246 -22369107 + (CCTA)n Simple_repeat Simple_repeat 1 25 0 * 342 0 0 0 chr1 220295245 220295283 -22369070 + (CA)n Simple_repeat Simple_repeat 2 39 0 371 373 30 12 chr1 220297606 220297775 -22366578 + MIR SINE MIR 91 262 0 293 207 58 35 chr1 220299572 220299659 -22364694 + MIR3 SINE MIR 94 182 -26 2426 65 3 0 chr1 220299780 220300087 -22364266 + AluSp SINE Alu 1 308 -5 1743 115 81 27 chr1 220300706 220301001 -22363352 - AluSx SINE Alu -1 311 1 2224 69 0 16 chr1 220301173 220301478 -22362875 + AluY SINE Alu 1 300 -11 2113 130 0 0 chr1 220301532 220301833 -22362520 - AluSx SINE Alu -5 307 7 1892 140 0 28 chr1 220302005 220302142 -22362211 + AluSx SINE Alu 1 140 -172 2159 88 23 7 chr1 220302142 220302447 -22361906 + AluY SINE Alu 1 310 -1 1892 140 0 28 chr1 220302447 220302630 -22361723 + AluSx SINE Alu 140 312 0 220 70 47 0 chr1 220305544 220305587 -22358766 + GA-rich Low_complexity Low_complexity 2 46 0 632 98 0 0 chr1 220306179 220306261 -22358092 - AluSp/q SINE Alu -16 297 216 205 254 56 28 chr1 220306261 220306332 -22358021 - MIR SINE MIR -116 146 74 529 148 10 10 chr1 220306599 220306700 -22357653 - MER53 DNA DNA -86 103 3 1096 257 9 67 chr1 220307715 220307850 -22356503 + LTR32 LTR ERVL 149 290 -181 2005 140 0 0 chr1 220307850 220308157 -22356196 + AluSx SINE Alu 1 307 -5 1096 257 9 67 chr1 220308157 220308364 -22355989 + LTR32 LTR ERVL 290 471 0 287 249 74 124 chr1 220308380 220308436 -22355917 + MIR SINE MIR 49 106 -156 2118 80 0 52 chr1 220308436 220308476 -22355877 - AluSq SINE Alu 0 313 272 198 0 0 0 chr1 220308476 220308498 -22355855 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2118 80 0 52 chr1 220308498 220308783 -22355570 - AluSq SINE Alu -41 272 5 812 154 0 29 chr1 220308790 220308926 -22355427 - FLAM_C SINE Alu -1 132 1 287 249 74 124 chr1 220308926 220309078 -22355275 + MIR SINE MIR 112 254 -8 312 281 44 56 chr1 220309085 220309225 -22355128 - L1M4 LINE L1 -2913 3233 3093 2360 54 0 3 chr1 220309225 220309549 -22354804 - AluY SINE Alu 0 323 1 312 281 44 56 chr1 220309549 220309567 -22354786 - L1M4 LINE L1 -3053 3093 3076 264 283 52 9 chr1 220309626 220309654 -22354699 - L1M4 LINE L1 -751 5395 5370 1554 211 3 19 chr1 220309654 220309834 -22354519 - AluJb SINE Alu 0 312 138 1907 113 0 80 chr1 220309834 220310161 -22354192 - AluSx SINE Alu -11 301 1 1554 211 3 19 chr1 220310161 220310297 -22354056 - AluJb SINE Alu -174 138 1 264 283 52 9 chr1 220310297 220310480 -22353873 - L1M4 LINE L1 -776 5370 5175 354 263 242 21 chr1 220310499 220310689 -22353664 - L1M4 LINE L1 -1543 4603 4372 1904 102 70 0 chr1 220310735 220311020 -22353333 - AluSx SINE Alu -7 305 1 366 334 43 13 chr1 220311126 220311428 -22352925 - L1M4 LINE L1 -1853 4293 3983 2263 90 3 0 chr1 220311461 220311761 -22352592 + AluSg SINE Alu 1 301 -9 1668 151 44 4 chr1 220311770 220312080 -22352273 + AluJo SINE Alu 1 321 0 821 240 132 48 chr1 220312095 220312231 -22352122 + L1ME3A LINE L1 5488 5611 -553 1766 144 10 20 chr1 220312231 220312530 -22351823 + AluJo SINE Alu 1 296 -16 1991 112 0 40 chr1 220312532 220312855 -22351498 + AluSx SINE Alu 1 310 -2 821 240 132 48 chr1 220312855 220313180 -22351173 + L1ME3A LINE L1 5611 5995 -169 2058 115 0 22 chr1 220313940 220314252 -22350101 + AluSx SINE Alu 1 305 -7 336 330 17 0 chr1 220314737 220314852 -22349501 + MIR SINE MIR 77 193 -69 241 247 15 27 chr1 220314988 220315062 -22349291 - MIR SINE MIR -103 105 44 1987 146 7 0 chr1 220316386 220316695 -22347658 - AluSq SINE Alu -2 311 1 2198 88 0 0 chr1 220316702 220317052 -22347301 - AluSx SINE Alu 0 350 1 5722 140 22 89 chr1 220317276 220317616 -22346737 + L1MC1 LINE L1 4979 5340 -993 1537 157 52 42 chr1 220317616 220317922 -22346431 - AluJb SINE Alu -3 309 1 5722 140 22 89 chr1 220317922 220318051 -22346302 + L1MC1 LINE L1 5340 5476 -857 2228 105 0 3 chr1 220318051 220318364 -22345989 + AluSq SINE Alu 1 312 -1 5722 140 22 89 chr1 220318364 220318386 -22345967 + L1MC1 LINE L1 5476 5498 -835 2293 62 0 16 chr1 220318386 220318694 -22345659 + AluY SINE Alu 1 303 -8 5722 140 22 89 chr1 220318694 220319469 -22344884 + L1MC1 LINE L1 5498 6148 -185 2110 94 3 11 chr1 220319469 220319783 -22344570 + AluSx SINE Alu 1 312 0 5722 140 22 89 chr1 220319783 220319958 -22344395 + L1MC1 LINE L1 6148 6333 0 1063 280 29 53 chr1 220319965 220320555 -22343798 + L2 LINE L2 2738 3312 -1 215 222 206 0 chr1 220320589 220320652 -22343701 + MIR3 SINE MIR 112 187 -21 2088 103 0 0 chr1 220321030 220321351 -22343002 - AluSx SINE Alu 0 321 1 301 258 21 10 chr1 220322411 220322508 -22341845 - MIR3 SINE MIR -3 205 108 261 219 0 0 chr1 220323269 220323342 -22341011 + (TG)n Simple_repeat Simple_repeat 1 73 0 950 136 19 9 chr1 220324265 220324474 -22339879 + MLT1B LTR MaLR 5 314 -51 256 146 0 0 chr1 220324466 220324514 -22339839 - FLAM SINE Alu 0 133 86 * 889 192 53 34 chr1 220324514 220324722 -22339631 - AluJo SINE Alu -92 220 9 252 152 15 106 chr1 220324733 220324799 -22339554 + MLT1B LTR MaLR 300 359 -15 258 329 0 56 chr1 220325030 220325173 -22339180 + MIR SINE MIR 106 240 -22 2109 102 0 0 chr1 220325630 220325905 -22338448 + AluSx SINE Alu 1 275 -37 423 0 0 0 chr1 220325910 220325957 -22338396 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 241 325 112 24 chr1 220326295 220326464 -22337889 + L2 LINE L2 3130 3313 0 195 245 20 0 chr1 220326918 220326967 -22337386 - MER5A DNA MER1_type -72 117 68 338 268 181 0 chr1 220327349 220327487 -22336866 - MIR SINE MIR -15 247 85 1034 55 0 0 chr1 220327952 220328080 -22336273 + AluSc SINE Alu 1 128 -181 2291 126 0 0 chr1 220329618 220329927 -22334426 - AluSx SINE Alu -3 309 1 1094 72 0 22 chr1 220330416 220330554 -22333799 + AluSg SINE Alu 1 135 -175 421 109 0 0 chr1 220330554 220330673 -22333680 + AluSg/x SINE Alu 192 288 -24 258 210 32 0 chr1 220331224 220331286 -22333067 - L1MC4a LINE L1 -1861 5947 5884 305 319 9 35 chr1 220331650 220331766 -22332587 - HAL1b LINE L1 -7 1341 1229 1891 134 7 27 chr1 220332560 220332858 -22331495 - AluJb SINE Alu -20 292 1 193 296 0 0 chr1 220333391 220333445 -22330908 + L2 LINE L2 3208 3261 -11 201 303 124 11 chr1 220333546 220333635 -22330718 + MIR SINE MIR 7 105 -157 3035 195 110 10 chr1 220333637 220334129 -22330224 - L1MB8 LINE L1 -1 6177 5579 777 167 0 0 chr1 220334129 220334255 -22330098 - FLAM_A SINE Alu -7 126 1 3035 195 110 10 chr1 220334255 220334535 -22329818 - L1MB8 LINE L1 -599 5579 5328 223 281 178 27 chr1 220334535 220334681 -22329672 + MIR SINE MIR 92 259 -3 2331 113 0 0 chr1 220335057 220335359 -22328994 - AluSc SINE Alu -7 302 1 289 306 22 60 chr1 220335522 220335587 -22328766 + MIR SINE MIR 62 121 -141 2596 49 0 16 chr1 220335587 220335892 -22328461 - AluY SINE Alu -11 300 1 289 306 22 60 chr1 220335892 220335960 -22328393 + MIR SINE MIR 121 190 -72 439 285 106 17 chr1 220337228 220337407 -22326946 + MIR SINE MIR 20 214 -48 190 254 95 16 chr1 220339409 220339472 -22324881 - MIR SINE MIR -119 143 76 1876 110 64 11 chr1 220339486 220339767 -22324586 + AluSx SINE Alu 1 296 -16 222 231 138 0 chr1 220339769 220339834 -22324519 - MIR SINE MIR -10 252 179 26 64 0 0 chr1 220340834 220340881 -22323472 + GC_rich Low_complexity Low_complexity 1 47 0 2525 58 0 0 chr1 220341240 220341534 -22322819 - AluSq SINE Alu -19 294 1 2431 67 0 3 chr1 220341857 220342171 -22322182 - AluSp SINE Alu 0 313 1 341 243 203 10 chr1 220342177 220342477 -22321876 - L1ME4a LINE L1 -3 6118 5761 303 238 16 0 chr1 220342520 220342583 -22321770 - L2 LINE L2 -48 3265 3202 2336 107 13 0 chr1 220342598 220342906 -22321447 - AluSx SINE Alu 0 312 1 2382 105 0 3 chr1 220343656 220343962 -22320391 + AluSx SINE Alu 1 305 -7 23 54 0 0 chr1 220344149 220344186 -22320167 + AT_rich Low_complexity Low_complexity 1 37 0 315 265 17 26 chr1 220344186 220344303 -22320050 + L1M4 LINE L1 3111 3226 -2920 716 147 17 9 chr1 220344303 220344419 -22319934 - FLAM_C SINE Alu -25 118 2 1915 167 10 0 chr1 220345189 220345495 -22318858 + AluSx SINE Alu 1 309 -3 1469 184 20 93 chr1 220345613 220345956 -22318397 + AluYb8 SINE Alu 1 318 0 2220 43 0 0 chr1 220345960 220346240 -22318113 + L1PA5 LINE L1 5875 6154 0 2369 108 0 0 chr1 220346254 220346550 -22317803 - AluSx SINE Alu -16 296 1 2441 59 0 59 chr1 220346560 220346882 -22317471 - AluY SINE Alu -8 303 1 1471 190 24 38 chr1 220347015 220347334 -22317019 - AluJb SINE Alu 0 315 1 392 191 43 0 chr1 220347405 220347499 -22316854 - MLT1E2 LTR MaLR 0 626 529 1063 177 30 10 chr1 220347500 220347744 -22316609 + AluJo SINE Alu 75 322 0 2786 184 13 15 chr1 220347748 220348281 -22316072 - MLT1E2 LTR MaLR -94 532 1 2275 114 3 16 chr1 220348582 220348897 -22315456 - AluSx SINE Alu -1 311 1 6610 119 44 30 chr1 220348972 220349003 -22315350 - Tigger3b DNA MER2_type -1797 1231 1202 2181 129 0 3 chr1 220349003 220349305 -22315048 + AluSg SINE Alu 1 301 -9 6610 119 44 30 chr1 220349305 220349820 -22314533 - Tigger3b DNA MER2_type -1826 1202 695 2367 102 7 0 chr1 220349820 220350123 -22314230 - AluSx SINE Alu -7 305 1 6610 119 44 30 chr1 220350123 220350178 -22314175 - Tigger3b DNA MER2_type -2333 695 642 1980 141 3 28 chr1 220350178 220350498 -22313855 - AluSx SINE Alu 0 312 1 6610 119 44 30 chr1 220350498 220350892 -22313461 - Tigger3b DNA MER2_type -2386 642 213 2103 138 0 10 chr1 220350892 220351196 -22313157 - AluSx SINE Alu -11 301 1 6610 119 44 30 chr1 220351196 220351412 -22312941 - Tigger3b DNA MER2_type -2815 213 1 390 243 81 44 chr1 220351607 220351743 -22312610 + MIR SINE MIR 116 256 -6 1327 160 5 9 chr1 220351821 220352034 -22312319 + AluSx SINE Alu 1 212 -100 358 66 0 5 chr1 220352034 220352090 -22312263 + AluSq/x SINE Alu 78 125 -178 2327 88 3 13 chr1 220352091 220352399 -22311954 + AluSg SINE Alu 1 305 -5 1275 157 41 116 chr1 220352401 220352720 -22311633 + AluJb SINE Alu 1 295 -17 182 319 126 22 chr1 220353168 220353303 -22311050 - MIR3 SINE MIR -38 170 22 508 298 35 31 chr1 220354329 220354587 -22309766 - MIR SINE MIR 0 262 4 1593 94 5 0 chr1 220354809 220355011 -22309342 - AluSq SINE Alu -110 203 1 743 189 8 0 chr1 220355050 220355182 -22309171 - FLAM_C SINE Alu 0 133 1 2390 93 0 16 chr1 220355216 220355529 -22308824 - AluSg SINE Alu -2 308 1 197 259 60 60 chr1 220356817 220356933 -22307420 - MIR SINE MIR -113 149 34 216 0 0 0 chr1 220357640 220357664 -22306689 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 799 283 4 22 chr1 220358472 220358698 -22305655 + MIR SINE MIR 41 262 0 2257 93 17 0 chr1 220358735 220359035 -22305318 - AluY SINE Alu -6 305 1 310 266 177 0 chr1 220359067 220359180 -22305173 - MIR SINE MIR 0 262 130 201 121 0 0 chr1 220359689 220359722 -22304631 + (TATATG)n Simple_repeat Simple_repeat 1 33 0 803 183 0 21 chr1 220360064 220360206 -22304147 + AluJo SINE Alu 1 139 -173 621 257 34 17 chr1 220360218 220360393 -22303960 - MIR SINE MIR -21 241 64 281 301 52 62 chr1 220361715 220361908 -22302445 - MIR3 SINE MIR -3 205 15 416 218 135 23 chr1 220362924 220363057 -22301296 + MER5A DNA MER1_type 39 186 -3 2303 125 0 0 chr1 220363368 220363673 -22300680 - AluSx SINE Alu -7 305 1 1998 163 0 3 chr1 220364642 220364955 -22299398 + AluJo SINE Alu 1 312 0 2377 98 0 3 chr1 220366025 220366330 -22298023 - AluSx SINE Alu -1 311 8 2207 93 3 50 chr1 220366338 220366659 -22297694 - AluSx SINE Alu -6 306 1 234 213 49 33 chr1 220366685 220366746 -22297607 - L2 LINE L2 -1 3271 3210 1456 139 0 46 chr1 220367840 220368078 -22296275 - AluJb SINE Alu -11 301 75 241 313 60 0 chr1 220368096 220368179 -22296174 - HAL1b LINE L1 -443 905 818 1973 97 73 21 chr1 220368513 220368830 -22295523 + AluSx SINE Alu 2 312 0 1289 140 25 15 chr1 220368878 220369078 -22295275 - AluJ SINE Alu 0 312 111 663 173 0 0 chr1 220369277 220369381 -22294972 - AluJ SINE Alu -207 105 2 257 346 28 16 chr1 220369457 220369639 -22294714 - L1MC4a LINE L1 -1832 5976 5793 362 150 38 75 chr1 220369660 220369740 -22294613 + AluJo SINE Alu 63 139 -163 527 294 92 21 chr1 220369740 220369978 -22294375 - L1MC4a LINE L1 -2056 5752 5498 2275 105 3 0 chr1 220369979 220370273 -22294080 - AluSg SINE Alu -15 295 1 1327 164 85 0 chr1 220370486 220370767 -22293586 - L1MC3 LINE L1 -1 7784 7480 2119 105 77 0 chr1 220371459 220371745 -22292608 - AluSg SINE Alu -2 308 1 1503 216 20 0 chr1 220372538 220372835 -22291518 - MLT1F1 LTR MaLR -14 553 251 2294 99 3 0 chr1 220372992 220373284 -22291069 + AluSx SINE Alu 1 293 -19 2113 121 7 14 chr1 220373289 220373579 -22290774 + AluJb SINE Alu 1 288 -24 675 228 19 0 chr1 220373590 220373748 -22290605 + MER96B DNA MER1_type? 256 416 -1 788 169 0 0 chr1 220374161 220374291 -22290062 + FLAM_C SINE Alu 3 132 -1 250 238 181 9 chr1 220374668 220374773 -22289580 - L2 LINE L2 -1 3271 3149 2255 105 0 3 chr1 220375151 220375458 -22288895 + AluSq SINE Alu 1 306 0 1416 99 0 0 chr1 220375459 220375640 -22288713 + AluSg/x SINE Alu 131 311 -1 394 355 112 0 chr1 220375811 220376025 -22288328 + MIR SINE MIR 15 252 -10 1860 146 51 3 chr1 220376055 220376349 -22288004 + AluJo SINE Alu 3 310 -2 2383 98 0 3 chr1 220376434 220376741 -22287612 + AluSg SINE Alu 1 306 -4 1485 143 5 0 chr1 220376800 220377016 -22287337 + AluJb SINE Alu 83 299 -13 1503 125 161 0 chr1 220377148 220377396 -22286957 + AluSx SINE Alu 1 288 -14 317 291 127 16 chr1 220377496 220377867 -22286486 + L1ME4a LINE L1 5709 6120 -1 185 327 113 40 chr1 220377894 220378044 -22286309 + MIR SINE MIR 24 184 -78 2264 102 0 0 chr1 220378160 220378536 -22285817 - AluSg SINE Alu 0 376 1 264 254 28 0 chr1 220379039 220379110 -22285243 - MIR SINE MIR -72 136 64 27 0 0 0 chr1 220379207 220379234 -22285119 + AT_rich Low_complexity Low_complexity 1 27 0 1836 125 26 51 chr1 220379235 220379576 -22284777 + AluSx SINE Alu 1 312 0 691 215 24 64 chr1 220379719 220379886 -22284467 + L1ME3A LINE L1 5127 5267 -903 2142 107 47 10 chr1 220379886 220380186 -22284167 + AluSx SINE Alu 1 311 -1 691 215 24 64 chr1 220380186 220380346 -22284007 + L1ME3A LINE L1 5267 5432 -738 711 149 44 0 chr1 220380353 220380467 -22283886 + FLAM_C SINE Alu 1 119 -14 210 37 0 0 chr1 220380497 220380524 -22283829 + (TA)n Simple_repeat Simple_repeat 2 28 0 1059 131 0 4 chr1 220380857 220381119 -22283234 + (TA)n Simple_repeat Simple_repeat 1 260 0 301 221 143 0 chr1 220381138 220381215 -22283138 + L1ME3A LINE L1 5584 5671 -499 1320 209 142 98 chr1 220381215 220381249 -22283104 + MLT2B3 LTR ERVL 1 32 -522 2136 98 3 10 chr1 220381249 220381546 -22282807 + AluSx SINE Alu 1 295 -17 1320 209 142 98 chr1 220381546 220382024 -22282329 + MLT2B3 LTR ERVL 32 536 -18 262 200 36 0 chr1 220382075 220382130 -22282223 + MER66A LTR ERV1 284 340 -138 387 0 0 0 chr1 220382149 220382192 -22282161 + (GA)n Simple_repeat Simple_repeat 2 44 0 3409 199 17 63 chr1 220382203 220383219 -22281134 + LTR5 LTR ERVK 1 969 0 508 252 106 13 chr1 220383219 220383400 -22280953 + L1ME3A LINE L1 5697 5881 -285 710 133 106 53 chr1 220383427 220383615 -22280738 + L1ME3A LINE L1 5962 6159 -11 2030 115 0 16 chr1 220383726 220384030 -22280323 + AluSx SINE Alu 1 299 -13 2289 87 10 0 chr1 220384326 220384635 -22279718 - AluSx SINE Alu 0 312 1 1600 153 10 61 chr1 220384857 220385170 -22279183 - AluJb SINE Alu -13 299 3 338 313 0 0 chr1 220385605 220385688 -22278665 - L2 LINE L2 -537 2777 2695 1956 90 0 0 chr1 220385693 220385948 -22278405 + AluSx SINE Alu 1 255 -57 7394 116 124 83 chr1 220385948 220387546 -22276807 + pTR5 LTR ERV1 743 2407 -31 225 173 27 67 chr1 220387546 220387621 -22276732 + Alu SINE Alu 222 293 -8 495 71 0 0 chr1 220387624 220387694 -22276659 + L1MB3 LINE L1 5762 5831 -352 1064 75 0 0 chr1 220387695 220387828 -22276525 + AluSg SINE Alu 2 134 -176 2071 98 11 0 chr1 220387828 220388114 -22276239 + AluSg SINE Alu 1 289 -21 1866 151 0 7 chr1 220388164 220388462 -22275891 + AluJo SINE Alu 1 296 -16 210 292 56 14 chr1 220388697 220388769 -22275584 - MIR SINE MIR -86 176 102 626 264 21 21 chr1 220389195 220389388 -22274965 + MIR SINE MIR 20 212 -50 225 261 43 29 chr1 220389782 220389851 -22274502 + L2 LINE L2 3202 3271 -1 2243 90 0 20 chr1 220389930 220390230 -22274123 + AluSx SINE Alu 1 294 -18 629 161 0 0 chr1 220390665 220390758 -22273595 - FLAM_C SINE Alu -16 127 35 2015 120 0 0 chr1 220391452 220391764 -22272589 - AluSx SINE Alu 0 312 1 2333 67 0 10 chr1 220391989 220392302 -22272051 + AluY SINE Alu 2 311 0 2287 70 0 7 chr1 220392710 220393011 -22271342 - AluSc SINE Alu -8 301 3 496 266 229 41 chr1 220393151 220393301 -22271052 - L2 LINE L2 -4 3309 3189 225 0 0 0 chr1 220393301 220393326 -22271027 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2156 96 0 0 chr1 220393333 220393625 -22270728 + AluSg SINE Alu 1 292 -18 496 266 229 41 chr1 220393625 220393642 -22270711 - L2 LINE L2 -128 3185 3173 1547 123 19 31 chr1 220393642 220393903 -22270450 + AluSx SINE Alu 40 297 -15 496 266 229 41 chr1 220393903 220394228 -22270125 - L2 LINE L2 -140 3173 2713 578 196 5 18 chr1 220394371 220394560 -22269793 + AluJ SINE Alu 74 295 -17 1028 169 111 4 chr1 220395151 220395385 -22268968 + MER33 DNA MER1_type 1 249 -75 1135 109 0 85 chr1 220395386 220395484 -22268869 - AluJo SINE Alu 0 312 240 2178 109 0 7 chr1 220395484 220395787 -22268566 + AluSx SINE Alu 1 301 -11 1135 109 0 85 chr1 220395787 220395899 -22268454 - AluJo SINE Alu -72 240 120 300 161 0 18 chr1 220395909 220395965 -22268388 + MER33 DNA MER1_type 270 324 0 571 297 60 36 chr1 220395979 220396228 -22268125 - MIR SINE MIR -3 259 5 2198 92 0 3 chr1 220397280 220397583 -22266770 + AluY SINE Alu 2 303 -8 785 269 111 0 chr1 220397736 220397952 -22266401 + LTR16B LTR ERVL 1 240 -224 737 264 217 32 chr1 220397957 220398324 -22266029 + L1MDa LINE L1 1423 1721 -4857 1969 138 0 7 chr1 220398324 220398622 -22265731 - AluSx SINE Alu -15 297 2 737 264 217 32 chr1 220398622 220398652 -22265701 + L1MDa LINE L1 1721 1744 -4834 1947 117 47 0 chr1 220398652 220398951 -22265402 + AluSp SINE Alu 1 313 0 737 264 217 32 chr1 220398951 220399397 -22264956 + L1MDa LINE L1 1744 2461 -4117 865 214 109 0 chr1 220399432 220399708 -22264645 + L1MDa LINE L1 2526 2831 -3709 595 199 57 11 chr1 220399725 220399901 -22264452 + L1MDa LINE L1 2882 3065 -3475 457 162 152 20 chr1 220399914 220400013 -22264340 - FLAM_C SINE Alu -15 128 17 239 114 29 0 chr1 220400031 220400066 -22264287 - Alu SINE Alu -266 36 1 2137 236 80 40 chr1 220400067 220400327 -22264026 + L1MDa LINE L1 3070 3318 -3222 2282 102 0 0 chr1 220400327 220400631 -22263722 + AluSq SINE Alu 1 304 -9 2137 236 80 40 chr1 220400631 220400891 -22263462 + L1MDa LINE L1 3318 3566 -2974 2216 86 7 0 chr1 220400891 220401194 -22263159 + AluY SINE Alu 1 305 -6 2137 236 80 40 chr1 220401194 220401502 -22262851 + L1MDa LINE L1 3566 3932 -2608 1672 117 38 62 chr1 220402429 220402719 -22261634 + AluSx SINE Alu 21 303 -9 2023 110 0 32 chr1 220403405 220403715 -22260638 - AluSx SINE Alu -12 300 1 516 219 119 0 chr1 220403884 220404044 -22260309 - MER104 DNA MER2_type -1 179 1 2075 125 0 0 chr1 220404811 220405108 -22259245 + AluSg SINE Alu 1 297 -13 2081 100 10 0 chr1 220405379 220405690 -22258663 + AluSg SINE Alu 1 314 0 2186 121 0 0 chr1 220405711 220406016 -22258337 + AluSx SINE Alu 3 307 -5 1731 158 10 10 chr1 220406156 220406467 -22257886 + AluJb SINE Alu 1 311 -1 1829 216 46 37 chr1 220406474 220406928 -22257425 + L1ME1 LINE L1 5704 6161 -5 1569 128 101 4 chr1 220408300 220408558 -22255795 + AluSg SINE Alu 14 296 -14 2342 70 0 3 chr1 220409692 220409991 -22254362 + AluY SINE Alu 1 298 -13 1446 192 7 21 chr1 220410145 220410431 -22253922 - AluJo SINE Alu -30 282 1 2113 101 10 0 chr1 220410441 220410738 -22253615 - AluSx SINE Alu -12 300 1 1390 156 0 0 chr1 220411209 220411427 -22252926 + AluJb SINE Alu 86 303 -9 511 302 160 4 chr1 220412373 220412598 -22251755 - L2 LINE L2 -2026 1288 1029 227 246 88 0 chr1 220412610 220412667 -22251686 + MIR SINE MIR 151 212 -50 2556 162 112 72 chr1 220412971 220413614 -22250739 - LTR65 LTR ERV1 0 669 1 1953 118 3 7 chr1 220413805 220414093 -22250260 - AluSx SINE Alu -25 287 1 1937 97 14 4 chr1 220414211 220414489 -22249864 + AluSq SINE Alu 1 281 -32 26 30 0 0 chr1 220416882 220416915 -22247438 + AT_rich Low_complexity Low_complexity 1 33 0 2234 76 3 0 chr1 220416928 220417217 -22247136 + AluSg SINE Alu 1 290 -20 25 0 0 0 chr1 220417460 220417485 -22246868 + AT_rich Low_complexity Low_complexity 1 25 0 1728 136 51 3 chr1 220417604 220417898 -22246455 - AluJo SINE Alu -3 309 2 21 36 0 0 chr1 220419666 220419694 -22244659 + AT_rich Low_complexity Low_complexity 1 28 0 1811 192 67 91 chr1 220419929 220420454 -22243899 - MLT2B1 LTR ERVL -8 512 1 2057 99 21 0 chr1 220420492 220420775 -22243578 + AluSx SINE Alu 1 289 -23 1949 131 3 0 chr1 220421029 220421339 -22243014 - AluSx SINE Alu 0 311 1 2137 97 10 0 chr1 220421398 220421688 -22242665 + AluSq SINE Alu 1 293 -20 2083 114 0 0 chr1 220421689 220422004 -22242349 + AluSc SINE Alu 2 309 0 540 176 0 0 chr1 220422013 220422098 -22242255 + FLAM_A SINE Alu 41 125 -17 23 0 0 0 chr1 220422098 220422121 -22242232 + AT_rich Low_complexity Low_complexity 1 23 0 1767 150 40 0 chr1 220422250 220422550 -22241803 + AluSx SINE Alu 1 312 0 882 160 10 80 chr1 220422551 220422751 -22241602 - AluJo SINE Alu -30 282 97 606 151 104 0 chr1 220422764 220422870 -22241483 - AluJb SINE Alu -186 126 10 1805 167 0 0 chr1 220422994 220423299 -22241054 + AluJb SINE Alu 1 305 0 2144 98 0 0 chr1 220423445 220423732 -22240621 - AluSx SINE Alu -17 295 9 263 159 0 0 chr1 220423740 220423784 -22240569 + AluSg/x SINE Alu 123 166 -136 1527 154 0 4 chr1 220423785 220424096 -22240257 + AluJb SINE Alu 68 377 0 2390 74 7 0 chr1 220424285 220424595 -22239758 + AluSq SINE Alu 1 312 -1 2031 132 0 3 chr1 220424748 220425059 -22239294 - AluSx SINE Alu -2 310 1 1550 184 20 59 chr1 220425583 220425626 -22238727 - MLT1A2 LTR MaLR 0 374 331 2160 100 7 0 chr1 220425626 220425935 -22238418 + AluSx SINE Alu 1 311 -1 1550 184 20 59 chr1 220425935 220426249 -22238104 - MLT1A2 LTR MaLR -43 331 31 882 154 54 0 chr1 220426250 220426399 -22237954 + FRAM SINE Alu 1 156 -20 427 241 138 0 chr1 220426443 220426559 -22237794 - MER103 DNA DNA -34 132 1 2169 107 7 0 chr1 220426726 220427034 -22237319 - AluSx SINE Alu -2 310 1 316 332 112 37 chr1 220427660 220427901 -22236452 - L2 LINE L2 -370 2944 2686 419 156 0 0 chr1 220427902 220427966 -22236387 + AluS SINE Alu 1 64 -245 1928 118 38 0 chr1 220427967 220428255 -22236098 + AluSq SINE Alu 13 311 -2 427 248 48 24 chr1 220428303 220428432 -22235921 - MIR SINE MIR -46 162 31 2296 55 31 3 chr1 220428593 220428885 -22235468 + AluY SINE Alu 1 300 -11 1501 198 7 3 chr1 220429606 220429889 -22234464 + AluJo SINE Alu 1 284 -28 381 285 201 51 chr1 220430054 220430401 -22233952 + L2 LINE L2 2308 2602 -712 2004 110 11 0 chr1 220430401 220430683 -22233670 + AluSq SINE Alu 1 285 -28 381 285 201 51 chr1 220430683 220430848 -22233505 + L2 LINE L2 2602 2897 -417 225 312 0 83 chr1 220431051 220431078 -22233275 + L2 LINE L2 3169 3197 -75 2075 112 10 19 chr1 220431078 220431391 -22232962 - AluSq SINE Alu -3 310 1 225 312 0 83 chr1 220431391 220431472 -22232881 + L2 LINE L2 3197 3268 -4 1272 154 0 73 chr1 220431752 220431819 -22232534 + AluJb SINE Alu 87 157 -155 2273 96 3 3 chr1 220431819 220432111 -22232242 + AluSg SINE Alu 1 292 -18 1272 154 0 73 chr1 220432111 220432285 -22232068 + AluJb SINE Alu 157 299 -13 959 195 0 0 chr1 220432310 220432479 -22231874 - AluSg/x SINE Alu -7 303 135 255 283 33 17 chr1 220432608 220432728 -22231625 - L1M4 LINE L1 -983 5163 5042 1174 153 0 0 chr1 220432732 220432909 -22231444 - AluSp SINE Alu 0 313 137 259 315 11 0 chr1 220432962 220433051 -22231302 - L1M4 LINE L1 -1329 4817 4728 467 281 0 0 chr1 220433105 220433226 -22231127 + L1ME3A LINE L1 5711 5831 -333 304 231 0 0 chr1 220433260 220433325 -22231028 + L1ME3A LINE L1 5815 5879 -291 813 162 87 23 chr1 220434040 220434213 -22230140 - MER5A DNA MER1_type 0 189 6 196 194 0 0 chr1 220434299 220434335 -22230018 + MIR3 SINE MIR 146 181 -27 1049 118 0 0 chr1 220434713 220434849 -22229504 + AluSq/x SINE Alu 2 137 -176 2309 87 0 3 chr1 220434849 220435137 -22229216 + AluSx SINE Alu 1 287 -25 458 153 36 0 chr1 220435138 220435249 -22229104 + (TA)n Simple_repeat Simple_repeat 2 116 0 2518 79 0 13 chr1 220435515 220435832 -22228521 + AluSp SINE Alu 1 313 0 2249 117 0 10 chr1 220436691 220436998 -22227355 - AluSx SINE Alu -8 304 1 2423 97 0 0 chr1 220437372 220437671 -22226682 + AluSp SINE Alu 1 299 -14 1296 146 38 14 chr1 220438021 220438233 -22226120 + AluJb SINE Alu 85 301 -11 24 0 0 0 chr1 220438238 220438262 -22226091 + AT_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr1 220438376 220438408 -22225945 + (TG)n Simple_repeat Simple_repeat 1 32 0 722 178 159 6 chr1 220438753 220438916 -22225437 + MER5A DNA MER1_type 2 189 0 875 177 0 0 chr1 220439046 220439187 -22225166 + AluJo SINE Alu 1 141 -171 23 0 0 0 chr1 220439223 220439246 -22225107 + AT_rich Low_complexity Low_complexity 1 23 0 284 151 116 23 chr1 220439253 220439339 -22225014 - L1MC5 LINE L1 -36 7925 7832 297 188 0 0 chr1 220439402 220439454 -22224899 + Alu SINE Alu 3 47 -261 34 0 0 0 chr1 220439478 220439512 -22224841 + AT_rich Low_complexity Low_complexity 1 34 0 230 270 15 22 chr1 220439515 220439652 -22224701 - L1MC5 LINE L1 -216 7745 7610 2300 111 3 0 chr1 220439799 220440106 -22224247 + AluSx SINE Alu 1 308 -4 1965 102 78 7 chr1 220440431 220440715 -22223638 + AluSx SINE Alu 1 304 -8 2463 54 3 3 chr1 220441077 220441373 -22222980 + AluY SINE Alu 1 296 -15 2329 104 0 3 chr1 220441552 220441859 -22222494 - AluSx SINE Alu -6 306 1 24 0 0 0 chr1 220441859 220441883 -22222470 + AT_rich Low_complexity Low_complexity 1 24 0 1604 125 57 39 chr1 220442007 220442202 -22222151 - AluSx SINE Alu 0 315 111 2571 61 0 3 chr1 220442202 220442512 -22221841 - AluY SINE Alu 0 311 3 1604 125 57 39 chr1 220442512 220442626 -22221727 - AluSx SINE Alu -204 111 1 1357 153 77 5 chr1 220442633 220442855 -22221498 - AluJb SINE Alu -20 292 55 1910 106 0 0 chr1 220442856 220443102 -22221251 + AluSx SINE Alu 60 305 -7 440 305 130 9 chr1 220493711 220494026 -22170327 + L2 LINE L2 2851 3203 -110 622 166 230 0 chr1 220494053 220494192 -22170161 + LTR33 LTR ERVL 101 271 -250 319 191 48 0 chr1 220494197 220494260 -22170093 + LTR33 LTR ERVL 449 514 -7 237 171 0 0 chr1 220494377 220494462 -22169891 + Alu SINE Alu 244 328 0 2048 222 103 17 chr1 220494464 220495067 -22169286 + L1M4 LINE L1 2283 2937 -3209 2267 84 7 0 chr1 220495067 220495364 -22168989 + AluSx SINE Alu 1 299 -13 1535 39 0 0 chr1 220495473 220495652 -22168701 - AluY SINE Alu -132 179 1 1945 133 13 7 chr1 220495671 220495973 -22168380 - AluJb SINE Alu -8 304 1 2077 113 0 0 chr1 220496093 220496403 -22167950 - AluSx SINE Alu 0 310 1 952 163 6 18 chr1 220496469 220496635 -22167718 + FRAM SINE Alu 1 159 -17 1101 185 0 23 chr1 220496789 220497005 -22167348 + AluJo SINE Alu 84 294 -18 536 152 45 18 chr1 220497791 220497903 -22166450 + MER4C LTR ERV1 1 115 -350 1121 302 75 10 chr1 220498054 220498468 -22165885 + MLT1K LTR MaLR 147 587 -1 781 294 161 50 chr1 220499260 220499848 -22164505 + L2 LINE L2 2592 3233 -39 710 285 40 4 chr1 220499848 220500097 -22164256 - MIR SINE MIR 0 262 5 781 294 161 50 chr1 220500097 220500141 -22164212 + L2 LINE L2 3233 3271 -1 1316 162 34 0 chr1 220500575 220500841 -22163512 - Charlie5 DNA MER1_type -103 2509 2235 23 33 0 0 chr1 220500848 220500878 -22163475 + AT_rich Low_complexity Low_complexity 1 30 0 2160 80 3 23 chr1 220500887 220501187 -22163166 + AluSc SINE Alu 1 294 -15 1214 210 73 7 chr1 220501197 220501321 -22163032 + AluJo SINE Alu 1 115 -197 254 29 29 0 chr1 220501321 220501356 -22162997 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1214 210 73 7 chr1 220501356 220501503 -22162850 + AluJo SINE Alu 115 290 -22 790 160 15 0 chr1 220501546 220501677 -22162676 - FLAM_C SINE Alu 0 133 1 2060 271 72 18 chr1 220501803 220502326 -22162027 - ERVL LTR ERVL -1544 4220 3726 2010 91 31 3 chr1 220502326 220502613 -22161740 - AluSx SINE Alu -17 295 1 2060 271 72 18 chr1 220502613 220503116 -22161237 - ERVL LTR ERVL -2038 3726 3060 31 0 0 0 chr1 220503116 220503147 -22161206 + AT_rich Low_complexity Low_complexity 1 31 0 2140 66 42 0 chr1 220503147 220503433 -22160920 - AluY SINE Alu -13 298 1 255 121 0 35 chr1 220503439 220503497 -22160856 + MER113 DNA MER1_type? 75 130 -391 2485 118 32 11 chr1 220503617 220503989 -22160364 - MER1A DNA MER1_type -148 381 2 1315 120 19 19 chr1 220503990 220504199 -22160154 - Tigger3(Golem) DNA MER2_type -2820 209 1 216 97 0 0 chr1 220504214 220504245 -22160108 + (T)n Simple_repeat Simple_repeat 1 31 0 366 109 0 0 chr1 220504562 220504617 -22159736 - Alu SINE Alu -2 300 246 1023 119 48 0 chr1 220504617 220504785 -22159568 + AluSg/x SINE Alu 136 311 -1 1983 134 3 10 chr1 220505212 220505526 -22158827 + AluSx SINE Alu 1 312 0 356 257 86 92 chr1 220505871 220505990 -22158363 - L1ME4a LINE L1 -7 6114 5996 1423 196 10 27 chr1 220505990 220506291 -22158062 - AluJb SINE Alu -16 296 1 207 0 0 0 chr1 220506293 220506316 -22158037 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1247 164 31 68 chr1 220506320 220506612 -22157741 - AluJb SINE Alu -31 281 1 356 257 86 92 chr1 220506612 220506636 -22157717 - L1ME4a LINE L1 -129 5992 5964 610 269 0 0 chr1 220506720 220506850 -22157503 - FLAM_A SINE Alu -3 130 1 1682 116 12 12 chr1 220507005 220507255 -22157098 - AluSx SINE Alu -62 250 1 560 250 19 99 chr1 220507917 220508035 -22156318 + L1MC5 LINE L1 6675 6801 -1160 2136 126 0 0 chr1 220508035 220508344 -22156009 + AluSx SINE Alu 1 309 -3 560 250 19 99 chr1 220508344 220508537 -22155816 + L1MC5 LINE L1 6801 6961 -1000 2436 49 0 16 chr1 220508717 220509022 -22155331 + AluY SINE Alu 1 300 -11 726 289 113 37 chr1 220509151 220509531 -22154822 - L3 LINE CR1 -8 1569 1161 331 353 139 0 chr1 220509515 220509702 -22154651 + MIR SINE MIR 49 261 -1 * 515 300 53 69 chr1 220509741 220509988 -22154365 - L3 LINE CR1 -433 1144 902 2149 102 0 3 chr1 220510005 220510298 -22154055 + AluSp SINE Alu 1 292 -21 2084 122 0 0 chr1 220510326 220510621 -22153732 + AluSg SINE Alu 6 300 -10 209 220 34 17 chr1 220510801 220510860 -22153493 - MIR SINE MIR -35 227 168 1880 133 0 61 chr1 220511122 220511452 -22152901 - AluSx SINE Alu -2 310 1 6916 50 6 29 chr1 220511496 220512439 -22151914 - SVA Other Other 0 1386 465 1850 179 5 35 chr1 220512548 220512766 -22151587 - MLT1A1 LTR MaLR -2 363 159 1531 166 53 7 chr1 220512766 220513050 -22151303 - AluJb SINE Alu -15 297 1 1850 179 5 35 chr1 220513050 220513205 -22151148 - MLT1A1 LTR MaLR -206 159 1 314 263 195 21 chr1 220513352 220513686 -22150667 - L2 LINE L2 -313 2959 2554 1908 141 20 13 chr1 220513984 220514290 -22150063 - AluJo SINE Alu -4 308 1 1789 82 12 8 chr1 220514389 220514645 -22149708 + AluSx SINE Alu 51 307 -5 1727 133 0 0 chr1 220514805 220515053 -22149300 - AluSx SINE Alu -64 248 1 1276 112 31 49 chr1 220515062 220515225 -22149128 - AluSg/x SINE Alu -10 302 138 2103 102 10 7 chr1 220515225 220515529 -22148824 - AluSg SINE Alu -5 305 1 2129 121 0 0 chr1 220515529 220515827 -22148526 - AluSx SINE Alu -14 298 1 1276 112 31 49 chr1 220515827 220515885 -22148468 - AluSg/x SINE Alu -172 140 84 857 149 86 46 chr1 220515888 220516096 -22148257 + AluJb SINE Alu 104 318 0 276 211 106 12 chr1 220516355 220516440 -22147913 + MER5A DNA MER1_type 34 120 -58 2163 86 0 13 chr1 220517129 220517430 -22146923 + AluSq SINE Alu 1 297 -16 2108 104 3 0 chr1 220518722 220519011 -22145342 - AluSx SINE Alu -14 298 9 2282 243 70 39 chr1 220519111 220519987 -22144366 + L1MC5 LINE L1 7011 7913 -48 2310 44 3 20 chr1 220521202 220521527 -22142826 + AluY SINE Alu 1 320 0 213 115 39 19 chr1 220522024 220522076 -22142277 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 805 142 16 0 chr1 220522080 220522207 -22142146 + FLAM_C SINE Alu 1 129 -4 371 180 16 0 chr1 220522861 220522941 -22141412 + L1MB8 LINE L1 5861 5945 -256 2140 105 3 6 chr1 220522945 220523258 -22141095 + AluSq SINE Alu 1 312 -1 2050 127 10 7 chr1 220523266 220523573 -22140780 + AluJb SINE Alu 5 312 0 1059 151 0 0 chr1 220523787 220523953 -22140400 - AluSg/x SINE Alu -12 300 135 2434 60 0 0 chr1 220523966 220524265 -22140088 - AluY SINE Alu -12 299 1 24 103 0 0 chr1 220526511 220526598 -22137755 + GC_rich Low_complexity Low_complexity 1 87 0 30 27 0 0 chr1 220526619 220526656 -22137697 + GC_rich Low_complexity Low_complexity 1 37 0 2308 66 26 3 chr1 220527398 220527702 -22136651 - AluSq SINE Alu -2 311 1 378 187 93 0 chr1 220528805 220528880 -22135473 - MLT1D LTR MaLR -75 430 349 2211 86 3 16 chr1 220528893 220529197 -22135156 - AluSg SINE Alu -10 300 1 728 178 274 5 chr1 220529213 220529432 -22134921 - MLT1D LTR MaLR -226 279 2 482 276 0 53 chr1 220529519 220529671 -22134682 - HAL1 LINE L1 -31 2476 2333 21 0 0 0 chr1 220529678 220529699 -22134654 + AT_rich Low_complexity Low_complexity 1 21 0 320 290 183 15 chr1 220529727 220529858 -22134495 - HAL1 LINE L1 -295 2212 2060 730 249 91 42 chr1 220529939 220530204 -22134149 - HAL1 LINE L1 -694 1813 1536 1944 107 37 7 chr1 220530221 220530520 -22133833 - AluSx SINE Alu 0 312 5 2222 98 0 3 chr1 220530553 220530860 -22133493 - AluSx SINE Alu -6 306 1 300 304 0 0 chr1 220530895 220530964 -22133389 - HAL1 LINE L1 -2437 70 2 549 202 11 0 chr1 220531172 220531266 -22133087 - AluSc SINE Alu -108 201 107 1670 166 21 0 chr1 220531266 220531555 -22132798 - AluJb SINE Alu -17 295 1 2397 103 57 132 chr1 220531556 220531743 -22132610 + Tigger3(Golem) DNA MER2_type 2561 2760 -269 207 0 0 0 chr1 220531743 220531766 -22132587 + (TTG)n Simple_repeat Simple_repeat 2 24 0 870 205 13 0 chr1 220531768 220531924 -22132429 - FAM SINE Alu -17 158 1 2397 103 57 132 chr1 220531924 220531945 -22132408 + Tigger3(Golem) DNA MER2_type 2761 2782 -247 2487 48 0 10 chr1 220531945 220532255 -22132098 - AluY SINE Alu -4 307 1 2279 122 0 10 chr1 220532257 220532568 -22131785 - AluSx SINE Alu -4 308 1 2397 103 57 132 chr1 220532568 220532838 -22131515 + Tigger3(Golem) DNA MER2_type 2783 3029 0 1624 278 127 12 chr1 220533218 220533909 -22130444 + L2 LINE L2 1408 2178 -1136 316 197 0 0 chr1 220533917 220533978 -22130375 - Charlie5 DNA MER1_type 0 2621 2561 1389 152 0 0 chr1 220533978 220534175 -22130178 - AluSg/x SINE Alu -10 299 103 2217 106 0 0 chr1 220534284 220534592 -22129761 - AluSq SINE Alu 0 308 1 1813 151 7 49 chr1 220534593 220534754 -22129599 - AluSg SINE Alu -18 292 149 2290 113 3 0 chr1 220534754 220535065 -22129288 - AluSx SINE Alu 0 312 1 1813 151 7 49 chr1 220535065 220535208 -22129145 - AluSg SINE Alu -161 149 1 2362 93 3 3 chr1 220535214 220535526 -22128827 - AluSx SINE Alu 0 312 1 3487 235 91 39 chr1 220536553 220537495 -22126858 - L2 LINE L2 -157 3156 2127 2674 42 7 0 chr1 220537495 220537804 -22126549 + AluY SINE Alu 1 311 0 3487 235 91 39 chr1 220537804 220538127 -22126226 - L2 LINE L2 -1186 2127 1822 2334 100 0 3 chr1 220538279 220538579 -22125774 + AluSx SINE Alu 1 299 -13 1387 98 0 0 chr1 220538579 220538752 -22125601 + AluSg/x SINE Alu 134 306 -6 2528 61 0 3 chr1 220538752 220539048 -22125305 + AluY SINE Alu 1 295 -16 917 165 0 35 chr1 220539051 220539221 -22125132 + AluJo/FRAM SINE Alu 137 300 -2 576 268 62 0 chr1 220539229 220539472 -22124881 + L1M4 LINE L1 2350 2607 -3539 1457 241 74 54 chr1 220539575 220540132 -22124221 + L2 LINE L2 2274 2841 -473 842 221 13 0 chr1 220540134 220540292 -22124061 - FRAM SINE Alu -2 164 5 1713 129 15 111 chr1 220540308 220540496 -22123857 - AluSx SINE Alu 0 302 158 1957 115 4 0 chr1 220540496 220540756 -22123597 - AluSq SINE Alu -24 289 29 1713 129 15 111 chr1 220540756 220540901 -22123452 - AluSx SINE Alu -144 158 1 638 164 0 27 chr1 220540953 220541063 -22123290 - FLAM_C SINE Alu -27 116 10 979 237 177 48 chr1 220541077 220541495 -22122858 + L2 LINE L2 2842 3313 0 231 242 42 0 chr1 220541986 220542081 -22122272 + (CGGG)n Simple_repeat Simple_repeat 4 102 0 24 0 0 0 chr1 220543622 220543646 -22120707 + AT_rich Low_complexity Low_complexity 1 24 0 1447 83 0 0 chr1 220543951 220544131 -22120222 - AluSg/x SINE Alu 0 312 133 393 22 0 0 chr1 220544133 220544179 -22120174 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2383 66 0 17 chr1 220544179 220544466 -22119887 - AluY SINE Alu -29 282 1 622 98 0 0 chr1 220544505 220544587 -22119766 - AluSp/q SINE Alu -14 299 218 1018 140 0 6 chr1 220545727 220545884 -22118469 + AluSg/x SINE Alu 154 309 0 596 272 74 15 chr1 220545911 220546180 -22118173 + MLT1G3 LTR MaLR 155 529 -66 242 160 0 40 chr1 220546249 220546299 -22118054 + MLT1G3 LTR MaLR 543 590 0 718 294 65 65 chr1 220546447 220546498 -22117855 + MLT1J LTR MaLR 12 62 -449 2256 81 0 56 chr1 220546498 220546818 -22117535 - AluSg SINE Alu -8 302 1 718 294 65 65 chr1 220546818 220547262 -22117091 + MLT1J LTR MaLR 61 507 -4 1236 118 0 0 chr1 220547851 220548048 -22116305 - AluSg/x SINE Alu 0 324 128 2346 122 0 0 chr1 220548283 220548595 -22115758 - AluSx SINE Alu 0 312 1 281 325 17 0 chr1 220548616 220548736 -22115617 + MLT1K LTR MaLR 141 262 -326 232 118 0 0 chr1 220548964 220548998 -22115355 + MLT1K LTR MaLR 539 572 -16 570 184 47 50 chr1 220549008 220549051 -22115302 + MIR SINE MIR 23 65 -182 781 209 41 12 chr1 220549051 220549223 -22115130 - MER104 DNA MER2_type 0 180 4 570 184 47 50 chr1 220549223 220549331 -22115022 + MIR SINE MIR 65 185 -62 333 89 0 0 chr1 220549337 220549394 -22114959 + L1M4 LINE L1 5683 5739 -445 2055 151 0 10 chr1 220549394 220549698 -22114655 + AluJb SINE Alu 1 301 -11 2279 103 10 10 chr1 220549870 220550181 -22114172 + AluSq SINE Alu 1 311 -2 192 274 105 21 chr1 220550197 220550292 -22114061 - L2 LINE L2 -718 2596 2494 311 163 130 22 chr1 220550523 220550615 -22113738 + MIR SINE MIR 88 189 -73 24 32 0 0 chr1 220550854 220550885 -22113468 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 220552742 220552763 -22111590 + AT_rich Low_complexity Low_complexity 1 21 0 662 93 72 0 chr1 220553820 220553917 -22110436 - AluSc SINE Alu -14 295 192 1149 106 0 0 chr1 220553918 220554059 -22110294 - AluSq/x SINE Alu -171 141 1 519 200 85 97 chr1 220554282 220554470 -22109883 - MIR SINE MIR -63 145 6 546 128 0 0 chr1 220554963 220555049 -22109304 + MER53 DNA DNA 5 90 -99 431 171 11 11 chr1 220554975 220555063 -22109290 - MER53 DNA DNA -7 182 95 * 2449 85 3 3 chr1 220555522 220555828 -22108525 + AluSp SINE Alu 1 306 -7 6645 120 73 26 chr1 220555828 220556854 -22107499 - Tigger1 DNA MER2_type -1169 1249 273 2095 135 0 7 chr1 220556854 220557150 -22107203 + AluSx SINE Alu 1 294 -18 6645 120 73 26 chr1 220557150 220557163 -22107190 - Tigger1 DNA MER2_type -2145 273 262 2382 91 0 0 chr1 220557163 220557459 -22106894 + AluSx SINE Alu 1 296 -16 6645 120 73 26 chr1 220557459 220557589 -22106764 - Tigger1 DNA MER2_type -2156 262 24 21 36 0 0 chr1 220557853 220557881 -22106472 + GC_rich Low_complexity Low_complexity 1 28 0 198 318 127 32 chr1 220558035 220558161 -22106192 - MIR SINE MIR -68 194 57 663 146 15 8 chr1 220560031 220560161 -22104192 - L1M4b LINE L1 -5380 1479 1349 1504 143 162 0 chr1 220560161 220560420 -22103933 + AluJb SINE Alu 1 301 -1 456 192 0 0 chr1 220560556 220560634 -22103719 - AluJ/FLAM SINE Alu -232 80 3 2152 133 7 0 chr1 220562001 220562303 -22102050 - AluSx SINE Alu -8 304 1 215 213 0 0 chr1 220562318 220562365 -22101988 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 213 39 0 0 chr1 220562408 220562434 -22101919 + (GA)n Simple_repeat Simple_repeat 1 26 0 630 210 83 134 chr1 220563175 220563481 -22100872 + LTR34 LTR ERV1 126 479 -220 1892 119 0 0 chr1 220563481 220563733 -22100620 - AluSx SINE Alu -60 252 1 630 210 83 134 chr1 220563733 220563940 -22100413 + LTR34 LTR ERV1 479 695 -4 618 255 88 76 chr1 220563941 220564204 -22100149 + MLT1I LTR MaLR 142 407 -2 23 0 0 0 chr1 220564346 220564369 -22099984 + AT_rich Low_complexity Low_complexity 1 23 0 1733 179 7 20 chr1 220564372 220564674 -22099679 - AluJo SINE Alu -14 298 1 2188 116 0 20 chr1 220564995 220565298 -22099055 + AluSx SINE Alu 1 297 -15 686 180 8 0 chr1 220565325 220565447 -22098906 + FLAM_C SINE Alu 15 137 -6 504 275 168 51 chr1 220565823 220566030 -22098323 - L2 LINE L2 -34 3279 3021 1043 152 0 29 chr1 220566030 220566201 -22098152 - FRAM SINE Alu 0 166 1 504 275 168 51 chr1 220566201 220566309 -22098044 - L2 LINE L2 -292 3021 2927 484 287 126 9 chr1 220566472 220566684 -22097669 - MIR SINE MIR -31 231 3 635 163 8 41 chr1 220566968 220567091 -22097262 + FLAM_C SINE Alu 1 119 -24 27 29 0 0 chr1 220567091 220567125 -22097228 + AT_rich Low_complexity Low_complexity 1 34 0 377 292 42 21 chr1 220567295 220567439 -22096914 - MIR3 SINE MIR -61 147 1 2348 86 3 0 chr1 220568078 220568370 -22095983 + AluSq SINE Alu 1 293 -20 2047 128 40 0 chr1 220568625 220568923 -22095430 - AluSq SINE Alu -3 310 1 183 42 0 0 chr1 220569095 220569119 -22095234 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 988 171 0 13 chr1 220569119 220569277 -22095076 - FAM SINE Alu -19 156 1 228 220 0 20 chr1 220570227 220570277 -22094076 + G-rich Low_complexity Low_complexity 1 49 0 421 202 22 45 chr1 220570948 220571037 -22093316 - MIR SINE MIR -118 144 58 182 62 31 0 chr1 220571629 220571661 -22092692 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2107 129 3 0 chr1 220571663 220571950 -22092403 - AluSx SINE Alu -24 288 1 26 50 0 0 chr1 220573227 220573267 -22091086 + GC_rich Low_complexity Low_complexity 1 40 0 408 40 0 0 chr1 220573739 220573789 -22090564 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 450 250 17 0 chr1 220573822 220573938 -22090415 - L1ME LINE L1 -399 5767 5650 201 195 0 0 chr1 220574181 220574222 -22090131 + T-rich Low_complexity Low_complexity 1 41 0 * 599 208 11 11 chr1 220574217 220574395 -22089958 + CT-rich Low_complexity Low_complexity 3 180 0 1526 184 0 0 chr1 220574400 220574645 -22089708 - AluJo SINE Alu -32 280 36 771 250 85 18 chr1 220574813 220575037 -22089316 + MIR SINE MIR 21 259 -3 353 225 153 9 chr1 220575249 220575360 -22088993 - L1ME4a LINE L1 0 6121 5995 535 240 104 0 chr1 220575557 220575711 -22088642 + L1MC4a LINE L1 5742 5911 -1897 1958 169 0 13 chr1 220575712 220576025 -22088328 - AluJb SINE Alu -3 309 1 1952 102 0 111 chr1 220576245 220576578 -22087775 - AluSx SINE Alu -16 296 1 263 346 37 0 chr1 220576646 220576727 -22087626 + L2 LINE L2 3189 3272 0 2236 129 0 3 chr1 220576939 220577242 -22087111 + AluJb SINE Alu 1 302 -10 232 180 0 40 chr1 220577319 220577369 -22086984 - L2 LINE L2 -2 3311 3264 875 225 121 4 chr1 220577420 220577700 -22086653 - MER20B DNA MER1_type -3 780 468 649 229 170 5 chr1 220577770 220577988 -22086365 - MER20B DNA MER1_type -447 336 83 74 90 0 0 chr1 220578483 220578683 -22085670 + AT_rich Low_complexity Low_complexity 1 200 0 1800 167 7 33 chr1 220578692 220578991 -22085362 + AluJb SINE Alu 1 291 -21 22 80 0 0 chr1 220578994 220579044 -22085309 + AT_rich Low_complexity Low_complexity 1 50 0 225 0 0 0 chr1 220579192 220579217 -22085136 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2188 125 0 0 chr1 220580252 220580547 -22083806 - AluSg SINE Alu -15 295 1 297 109 0 0 chr1 220580618 220580664 -22083689 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 230 345 0 0 chr1 220580669 220580727 -22083626 - L2 LINE L2 -24 3248 3191 1620 158 42 24 chr1 220581404 220581740 -22082613 + L1MC3 LINE L1 7444 7785 0 2480 89 0 0 chr1 220582581 220582883 -22081470 - AluSx SINE Alu -10 302 1 2171 141 0 3 chr1 220582886 220583198 -22081155 - AluJb SINE Alu -1 311 1 1596 172 12 62 chr1 220583402 220583727 -22080626 - AluJo SINE Alu -1 311 3 2564 70 0 0 chr1 220583733 220584033 -22080320 - AluSg SINE Alu -10 300 1 1086 147 0 0 chr1 220585034 220585197 -22079156 + AluSg/x SINE Alu 131 293 -17 239 340 140 30 chr1 220586593 220586828 -22077525 + L2 LINE L2 2958 3218 -54 1637 195 186 23 chr1 220586949 220587391 -22076962 + MLT1F LTR MaLR 1 514 -28 915 146 67 24 chr1 220587393 220587558 -22076795 - FRAM SINE Alu -10 166 1 21 0 0 0 chr1 220587573 220587594 -22076759 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 220588200 220588231 -22076122 + AT_rich Low_complexity Low_complexity 1 31 0 2317 117 3 0 chr1 220588313 220588622 -22075731 + AluSq SINE Alu 1 310 -3 277 367 77 34 chr1 220589517 220589724 -22074629 + L2 LINE L2 3057 3272 0 324 127 0 18 chr1 220589846 220589928 -22074425 - AluSq SINE Alu 0 301 234 1485 97 0 0 chr1 220589928 220590114 -22074239 - AluSq SINE Alu -127 186 1 297 271 0 0 chr1 220590130 220590200 -22074153 + MIR SINE MIR 73 142 -120 1714 136 52 39 chr1 220590234 220590520 -22073833 - AluJo SINE Alu -21 291 2 184 284 91 34 chr1 220591153 220591241 -22073112 + MIR SINE MIR 72 150 -58 256 288 30 0 chr1 220591608 220591674 -22072679 + MIR SINE MIR 86 153 -55 746 222 6 25 chr1 220591674 220591836 -22072517 + MER5B DNA MER1_type 3 161 -17 389 288 70 14 chr1 220593190 220593403 -22070950 - MIR SINE MIR -32 230 5 1728 132 113 0 chr1 220593684 220593950 -22070403 - AluSg SINE Alu -14 296 1 2284 109 30 21 chr1 220594181 220594611 -22069742 + SVA Other Other 432 865 -521 496 266 158 15 chr1 220595184 220595387 -22068966 + MIR SINE MIR 6 237 -25 27 0 0 0 chr1 220598548 220598575 -22065778 + GC_rich Low_complexity Low_complexity 1 27 0 246 268 18 27 chr1 220598602 220598714 -22065639 + C-rich Low_complexity Low_complexity 2 112 0 21 57 0 0 chr1 220598784 220598819 -22065534 + GC_rich Low_complexity Low_complexity 1 35 0 36 0 0 0 chr1 220598983 220599019 -22065334 + GC_rich Low_complexity Low_complexity 1 36 0 185 196 54 71 chr1 220600371 220600427 -22063926 + MIR SINE MIR 119 173 -89 512 256 25 8 chr1 220600514 220600635 -22063718 - L2 LINE L2 -6 3307 3185 2020 152 17 0 chr1 220600833 220601130 -22063223 + AluSx SINE Alu 1 302 -10 205 216 50 108 chr1 220601390 220601529 -22062824 + L2 LINE L2 3110 3240 -73 473 210 91 45 chr1 220601590 220601766 -22062587 - L1MC5 LINE L1 -60 7901 7718 2324 98 0 3 chr1 220601860 220602157 -22062196 + AluSx SINE Alu 1 296 -16 452 301 255 25 chr1 220602172 220602708 -22061645 + L2 LINE L2 2353 3008 -305 2339 102 0 7 chr1 220602765 220603069 -22061284 + AluSq SINE Alu 1 302 -11 440 255 54 7 chr1 220603256 220603405 -22060948 - L1ME3A LINE L1 -275 5895 5740 210 71 0 0 chr1 220603481 220603509 -22060844 + (CA)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr1 220604079 220604106 -22060247 + AT_rich Low_complexity Low_complexity 1 27 0 2253 115 3 0 chr1 220604214 220604510 -22059843 - AluSp SINE Alu -16 297 1 1904 161 0 10 chr1 220604516 220604814 -22059539 - AluJo SINE Alu -17 295 1 279 206 67 138 chr1 220605418 220605628 -22058725 - MIR3 SINE MIR -70 192 2 704 214 252 5 chr1 220606590 220606796 -22057557 - MIR SINE MIR -1 261 5 2284 102 7 13 chr1 220607061 220607364 -22056989 - AluSx SINE Alu -10 302 2 2063 106 6 61 chr1 220608118 220608429 -22055924 - AluSq SINE Alu -19 294 1 222 298 35 21 chr1 220608522 220608663 -22055690 + CT-rich Low_complexity Low_complexity 5 147 0 352 346 45 0 chr1 220609028 220609161 -22055192 + L2 LINE L2 3134 3272 0 1956 153 0 14 chr1 220609770 220610064 -22054289 - AluJb SINE Alu -14 298 9 2039 105 53 36 chr1 220610810 220611114 -22053239 + AluSq SINE Alu 1 309 -4 2153 150 0 0 chr1 220612135 220612441 -22051912 - AluSx SINE Alu -6 306 1 1357 171 112 19 chr1 220613132 220613401 -22050952 - AluJb SINE Alu -18 294 1 1907 165 3 7 chr1 220613455 220613752 -22050601 - AluJb SINE Alu -11 301 6 1563 143 9 0 chr1 220613842 220614065 -22050288 - AluJb SINE Alu -87 225 1 340 264 148 66 chr1 220614229 220614411 -22049942 + MIR SINE MIR 3 199 -63 262 280 70 33 chr1 220614700 220614988 -22049365 + L1P5 LINE L1 5293 5587 -575 1176 178 47 40 chr1 220615009 220615307 -22049046 - MER44D DNA MER2_type -39 570 1 23 0 0 0 chr1 220616254 220616277 -22048076 + AT_rich Low_complexity Low_complexity 1 23 0 220 191 24 0 chr1 220616770 220616812 -22047541 + (CGG)n Simple_repeat Simple_repeat 2 44 0 261 264 85 57 chr1 220617372 220617478 -22046875 - MIR SINE MIR -70 192 84 661 217 111 9 chr1 220617481 220617698 -22046655 - MER69 DNA AcHobo -2 2524 2286 952 164 60 43 chr1 220617792 220617873 -22046480 - MER69 DNA AcHobo -231 2295 2217 2248 100 10 7 chr1 220617873 220618183 -22046170 - AluSx SINE Alu 0 312 2 952 164 60 43 chr1 220618183 220618382 -22045971 - MER69 DNA AcHobo -309 2217 2010 * 979 275 63 32 chr1 220618379 220618445 -22045908 - MER69 DNA AcHobo -1581 945 883 2541 54 0 3 chr1 220618445 220618743 -22045610 - AluY SINE Alu -14 297 1 979 275 63 32 chr1 220618743 220619054 -22045299 - MER69 DNA AcHobo -1643 883 556 1991 222 120 2 chr1 220619490 220619999 -22044354 - MER69 DNA AcHobo -1956 570 2 2113 81 0 11 chr1 220621100 220621383 -22042970 - AluSx SINE Alu -22 290 11 2201 129 62 3 chr1 220622471 220622827 -22041526 + MER51B LTR ERV1 1 377 0 252 86 0 0 chr1 220624066 220624101 -22040252 + (CGG)n Simple_repeat Simple_repeat 3 37 0 2074 145 7 7 chr1 220624299 220624603 -22039750 + AluJb SINE Alu 9 312 0 2408 72 0 0 chr1 220624608 220624898 -22039455 + AluY SINE Alu 1 290 -21 236 222 56 0 chr1 220624900 220624954 -22039399 + MER81 DNA DNA 54 110 -4 1496 203 59 0 chr1 220624975 220625246 -22039107 + AluJo SINE Alu 1 287 -25 201 74 0 0 chr1 220625711 220625738 -22038615 + (A)n Simple_repeat Simple_repeat 1 27 0 183 80 0 0 chr1 220625738 220625763 -22038590 + (CA)n Simple_repeat Simple_repeat 2 26 0 921 187 21 16 chr1 220625771 220625958 -22038395 - MER5A DNA MER1_type -1 188 1 2227 96 0 7 chr1 220626357 220626658 -22037695 - AluSx SINE Alu -13 299 1 375 309 36 7 chr1 220627006 220627145 -22037208 - MER5A DNA MER1_type -46 143 1 1003 190 151 36 chr1 220627281 220627613 -22036740 + MSTD LTR MaLR 1 370 -26 1945 117 46 14 chr1 220627639 220627921 -22036432 - AluSx SINE Alu -21 291 1 2290 112 0 0 chr1 220628292 220628588 -22035765 + AluSg SINE Alu 1 296 -14 660 99 0 0 chr1 220628588 220628689 -22035664 - L1MA8 LINE L1 -12 6279 6179 375 132 59 0 chr1 220628691 220628759 -22035594 - L1MA9 LINE L1 -247 6065 5994 1327 191 16 0 chr1 220628835 220629081 -22035272 + MLT1F LTR MaLR 1 250 -292 1139 154 64 17 chr1 220629081 220629315 -22035038 - MER96B DNA MER1_type? 0 417 173 2380 90 0 3 chr1 220629451 220629751 -22034602 + AluSx SINE Alu 1 299 -13 792 284 50 0 chr1 220629929 220630147 -22034206 - MIR SINE MIR -16 246 18 447 239 15 54 chr1 220630160 220630290 -22034063 + MIR SINE MIR 32 156 -106 656 107 0 2 chr1 220630540 220630785 -22033568 + AluSg SINE Alu 1 303 -9 209 313 119 22 chr1 220631805 220632032 -22032321 - L2 LINE L2 -519 2795 2547 830 269 149 16 chr1 220632619 220633172 -22031181 + L2 LINE L2 2485 3115 -198 977 218 42 5 chr1 220834044 220834260 -21830093 + MER58A DNA MER1_type 1 224 0 1872 151 0 0 chr1 220834313 220834585 -21829768 + AluJb SINE Alu 1 272 -40 1917 272 141 25 chr1 220834706 220835523 -21828830 + L2 LINE L2 1356 2267 -1047 882 261 92 45 chr1 220835597 220836074 -21828279 + L2 LINE L2 2687 3177 -136 812 121 9 9 chr1 220836497 220836613 -21827740 - FLAM_C SINE Alu -19 124 9 381 288 205 40 chr1 220836984 220837091 -21827262 - L3 LINE CR1 -112 1465 1377 2080 128 0 3 chr1 220837091 220837397 -21826956 - AluSp SINE Alu -8 305 1 381 288 205 40 chr1 220837397 220837567 -21826786 - L3 LINE CR1 -200 1377 1142 203 268 36 0 chr1 220837632 220837688 -21826665 - L3 LINE CR1 -434 1143 1086 21 0 0 0 chr1 220838009 220838030 -21826323 + AT_rich Low_complexity Low_complexity 1 21 0 1617 80 31 9 chr1 220839501 220839726 -21824627 + MER30 DNA MER1_type 1 230 0 214 318 63 0 chr1 220840893 220840956 -21823397 + L2 LINE L2 3205 3271 -1 181 282 154 0 chr1 220841512 220841590 -21822763 - MIR SINE MIR -4 258 169 1865 183 58 58 chr1 220841605 220842119 -21822234 + L1MB4 LINE L1 5667 6180 0 481 288 78 13 chr1 220842121 220842274 -21822079 - MIR SINE MIR -85 177 15 315 242 71 0 chr1 220842496 220842595 -21821758 - L1MC4a LINE L1 -1923 5885 5780 253 252 63 55 chr1 220842715 220842842 -21821511 - L1MC4a LINE L1 -482 5639 5512 2691 254 30 34 chr1 220843213 220844075 -21820278 - L1ME3 LINE L1 -22 6209 5351 1292 287 77 42 chr1 220844116 220845203 -21819150 - L1ME3 LINE L1 -4452 1944 820 1712 157 89 0 chr1 220845486 220845767 -21818586 + AluJb SINE Alu 1 306 -6 393 270 52 29 chr1 220845778 220845952 -21818401 - L1MC4a LINE L1 -2450 3696 3519 228 275 22 11 chr1 220845980 220846071 -21818282 - L1MC4a LINE L1 -1654 6154 6063 617 247 50 11 chr1 220846139 220846321 -21818032 - L1MC4a LINE L1 -1886 5922 5734 234 182 0 0 chr1 220846409 220846453 -21817900 - L1MC4a LINE L1 -1201 4945 4902 2272 84 13 0 chr1 220846461 220846760 -21817593 + AluSp SINE Alu 1 303 -10 1409 141 84 38 chr1 220846780 220847069 -21817284 + AluJo SINE Alu 10 310 0 1023 226 18 18 chr1 220847081 220847302 -21817051 + MER58A DNA MER1_type 1 221 -3 239 197 30 15 chr1 220847305 220847371 -21816982 + L1MEc LINE L1 2268 2334 -4062 798 266 98 8 chr1 220847383 220847752 -21816601 + L1MEc LINE L1 2381 2782 -3433 2921 153 33 13 chr1 220847761 220848303 -21816050 + L1MC1 LINE L1 5781 6333 0 1785 242 55 70 chr1 220848303 220849237 -21815116 + L1MEc LINE L1 3913 4832 -1383 896 289 106 32 chr1 220849346 220849970 -21814383 + L1MEc LINE L1 1313 1982 -4414 322 333 89 7 chr1 220850009 220850144 -21814209 + L1MEc LINE L1 238 383 -6013 1477 164 11 34 chr1 220850561 220850860 -21813493 + AluJb SINE Alu 36 312 0 291 194 32 0 chr1 220850911 220850973 -21813380 - Alu SINE Alu -1 301 238 2162 244 146 18 chr1 220850985 220851871 -21812482 - HAL1 LINE L1 -156 2351 1353 593 283 95 59 chr1 220852020 220852966 -21811387 - L1M4 LINE L1 -1440 4706 3727 1723 185 3 16 chr1 220853220 220853533 -21810820 - AluJo SINE Alu -3 309 1 2151 121 0 13 chr1 220853649 220853954 -21810399 - AluSx SINE Alu -10 302 2 380 133 67 0 chr1 220853968 220854043 -21810310 - L1MB7 LINE L1 -1 6183 6104 4321 156 31 68 chr1 220854065 220854438 -21809915 - L1MB4 LINE L1 -6 6174 5789 435 19 0 0 chr1 220854438 220854490 -21809863 + (TG)n Simple_repeat Simple_repeat 2 53 0 4321 156 31 68 chr1 220854490 220854946 -21809407 - L1MB4 LINE L1 -391 5789 5368 2669 52 9 9 chr1 220854946 220855294 -21809059 - L1PA8 LINE L1 -11 6161 5814 4321 156 31 68 chr1 220855294 220855468 -21808885 - L1MB4 LINE L1 -812 5368 5189 1287 187 17 17 chr1 220855467 220855766 -21808587 - L1MB4 LINE L1 -1489 4657 4359 * 947 181 0 7 chr1 220855781 220855936 -21808417 - FRAM SINE Alu -30 146 1 2085 117 3 0 chr1 220857830 220858112 -21806241 - AluSx SINE Alu -29 283 1 436 313 55 0 chr1 220858226 220858427 -21805926 + L1M4 LINE L1 3949 4160 -1986 913 94 0 39 chr1 220858427 220858554 -21805799 + AluSc SINE Alu 1 122 -187 22 0 0 0 chr1 220858554 220858576 -21805777 + AT_rich Low_complexity Low_complexity 1 22 0 3739 110 212 1 chr1 220858582 220859323 -21805030 + L1P LINE L1 11 1124 -5022 7267 47 3 1 chr1 220859323 220860773 -21803580 + L1PA5 LINE L1 4692 6149 -5 1307 101 0 6 chr1 220860775 220860953 -21803400 + AluSc SINE Alu 131 307 -2 280 234 95 7 chr1 220861293 220861430 -21802923 + L1M4 LINE L1 4509 4657 -1489 389 284 95 28 chr1 220861817 220862102 -21802251 + L1MDa LINE L1 1645 1948 -4592 * 572 209 79 0 chr1 220862074 220862213 -21802140 + L1M4 LINE L1 4851 5000 -1540 1227 94 9 47 chr1 220862317 220862530 -21801823 - L1PA10 LINE L1 -83 6085 5881 305 223 138 8 chr1 220862533 220862663 -21801690 + L1MDa LINE L1 2964 3110 -3430 279 179 48 60 chr1 220862664 220862748 -21801605 - L1M4 LINE L1 -1800 4346 4264 337 315 63 14 chr1 220864964 220865107 -21799246 + L2 LINE L2 3120 3269 -44 348 226 9 19 chr1 220865410 220865516 -21798837 - L1ME4a LINE L1 -266 5855 5751 485 246 8 40 chr1 220865519 220865645 -21798708 + L2 LINE L2 3191 3312 -1 278 254 59 42 chr1 220865657 220865775 -21798578 - L1ME4a LINE L1 -391 5730 5611 490 103 13 13 chr1 220866006 220866084 -21798269 + AluS SINE Alu 1 78 -234 311 155 10 41 chr1 220866184 220866281 -21798072 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 22 0 0 0 chr1 220866335 220866357 -21797996 + AT_rich Low_complexity Low_complexity 1 22 0 715 229 26 0 chr1 220866456 220866609 -21797744 - MER58B DNA MER1_type -3 338 182 209 200 0 18 chr1 220866800 220866847 -21797506 + L2 LINE L2 3215 3301 -12 1987 119 69 28 chr1 220866894 220867254 -21797099 + THE1C LTR MaLR 1 375 0 251 256 61 12 chr1 220867978 220868060 -21796293 + MIR SINE MIR 123 208 -54 1166 95 0 30 chr1 220869164 220869332 -21795021 - AluSg/x SINE Alu -14 298 136 364 102 37 6 chr1 220869334 220869407 -21794946 - Alu SINE Alu -249 53 1 361 301 60 17 chr1 220869411 220869613 -21794740 - MIR SINE MIR -36 226 17 2365 87 3 0 chr1 220870897 220871196 -21793157 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 220871452 220871474 -21792879 + AT_rich Low_complexity Low_complexity 1 22 0 2027 129 4 0 chr1 220871528 220871828 -21792525 - AluSx SINE Alu 0 301 1 458 290 138 27 chr1 220872512 220872809 -21791544 - L1MEd LINE L1 -5189 930 601 450 283 88 85 chr1 220872984 220873313 -21791040 - L1MEd LINE L1 -5774 345 16 2384 109 0 0 chr1 220873365 220873677 -21790676 + AluSx SINE Alu 1 312 0 347 325 7 40 chr1 220874654 220874805 -21789548 + MIR SINE MIR 28 173 -89 198 0 0 0 chr1 220874876 220874898 -21789455 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1148 130 16 5 chr1 220876343 220876527 -21787826 + AluSp SINE Alu 119 304 -9 1466 164 182 62 chr1 220876672 220877045 -21787308 - MER47B DNA MER2_type 0 418 1 239 286 176 0 chr1 220877217 220877308 -21787045 + L2 LINE L2 2600 2706 -608 3883 120 29 18 chr1 220877859 220878225 -21786128 - MER39B LTR ERV1 -23 630 270 1901 127 40 7 chr1 220878225 220878525 -21785828 - AluSx SINE Alu -2 310 1 1480 177 52 49 chr1 220878526 220878814 -21785539 - AluJb SINE Alu -22 290 2 3883 120 29 18 chr1 220878814 220879068 -21785285 - MER39B LTR ERV1 -382 271 1 203 346 0 0 chr1 220879072 220879124 -21785229 + L2 LINE L2 3188 3239 -33 306 148 0 0 chr1 220880400 220880454 -21783899 + (TA)n Simple_repeat Simple_repeat 1 54 0 707 306 41 8 chr1 220882046 220882288 -21782065 + MIR SINE MIR 13 262 0 1100 261 176 17 chr1 220882615 220883224 -21781129 - L2 LINE L2 -2 3311 2584 2201 106 3 7 chr1 220883224 220883525 -21780828 - AluSx SINE Alu 0 312 13 1100 261 176 17 chr1 220883525 220883587 -21780766 - L2 LINE L2 -729 2584 2533 360 293 93 42 chr1 220884535 220884794 -21779559 - L1ME4a LINE L1 -155 5966 5695 205 176 0 0 chr1 220885009 220885043 -21779310 + MIR SINE MIR 201 234 -28 * 213 244 0 0 chr1 220885040 220885085 -21779268 - MIR SINE MIR 0 262 218 527 280 64 6 chr1 220885226 220885383 -21778970 - MIR SINE MIR -50 212 47 441 84 0 0 chr1 220885674 220885745 -21778608 + (TATG)n Simple_repeat Simple_repeat 2 72 0 1762 135 4 0 chr1 220885745 220885995 -21778358 - AluSq SINE Alu -23 290 37 463 56 45 11 chr1 220886076 220886165 -21778188 + (TC)n Simple_repeat Simple_repeat 2 93 0 861 263 16 25 chr1 220886173 220886489 -21777864 - L1MEc LINE L1 -1539 4676 4364 1078 269 207 12 chr1 220886512 220887895 -21776458 - L1MEc LINE L1 -2208 4007 2268 304 213 90 133 chr1 220888182 220888293 -21776060 - L1MEc LINE L1 -4579 1817 1716 1696 185 0 3 chr1 220888293 220888580 -21775773 - AluJo SINE Alu -26 286 1 304 213 90 133 chr1 220888580 220888656 -21775697 - L1MEc LINE L1 -4680 1716 1638 249 33 0 0 chr1 220888696 220888726 -21775627 + (CA)n Simple_repeat Simple_repeat 2 31 0 2276 112 0 3 chr1 220888832 220889145 -21775208 - AluSq SINE Alu -1 312 1 1131 101 10 72 chr1 220889161 220889370 -21774983 - L1MA2 LINE L1 0 6304 6109 926 112 46 0 chr1 220889371 220889523 -21774830 - L1MA2 LINE L1 -126 7597 7439 * 4785 140 13 25 chr1 220889520 220890593 -21773760 - L1MA2 LINE L1 -743 6822 5882 1879 160 3 30 chr1 220890755 220891123 -21773230 - L1MA2 LINE L1 -1676 5889 5532 * 11891 178 83 51 chr1 220891121 220891448 -21772905 - L1MA2 LINE L1 -4936 2629 2314 2130 124 10 0 chr1 220891448 220891747 -21772606 - AluSx SINE Alu -10 302 1 11891 178 83 51 chr1 220891747 220891849 -21772504 - L1MA2 LINE L1 -5251 2314 2217 1973 119 28 18 chr1 220891849 220892134 -21772219 - AluSx SINE Alu -24 288 1 2089 125 3 0 chr1 220892142 220892431 -21771922 - AluSx SINE Alu -22 290 1 11891 178 83 51 chr1 220892431 220893836 -21770517 - L1MA2 LINE L1 -5354 2211 677 2427 96 0 3 chr1 220893836 220894149 -21770204 + AluSx SINE Alu 1 312 0 11891 178 83 51 chr1 220894149 220894833 -21769520 - L1MA2 LINE L1 -6888 677 17 1694 244 101 37 chr1 220894847 220895520 -21768833 - L1ME3 LINE L1 -66 6096 5381 317 305 55 30 chr1 220895592 220895652 -21768701 - L1ME3 LINE L1 -856 5290 5233 315 0 0 0 chr1 220895652 220895687 -21768666 + (TG)n Simple_repeat Simple_repeat 1 35 0 317 305 55 30 chr1 220895687 220895790 -21768563 - L1ME3 LINE L1 -913 5233 5123 911 294 112 16 chr1 220895996 220896767 -21767586 - L1ME3 LINE L1 -1778 4368 3524 1286 214 101 14 chr1 220896806 220897162 -21767191 - L1ME2 LINE L1 -11 6153 5767 239 150 0 0 chr1 220897284 220897324 -21767029 - MER46C DNA MER2_type -298 40 1 21 0 0 0 chr1 220897975 220897996 -21766357 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr1 220898975 220899011 -21765342 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr1 220899131 220899159 -21765194 + AT_rich Low_complexity Low_complexity 1 28 0 239 245 113 28 chr1 220900034 220900140 -21764213 - L1ME4a LINE L1 -43 6078 5964 3194 144 45 42 chr1 220900321 220900972 -21763381 - L1PB4 LINE L1 0 6156 5504 1983 160 0 0 chr1 220901420 220901727 -21762626 - AluSx SINE Alu -5 307 1 31 26 0 0 chr1 220902005 220902043 -21762310 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 220902748 220902769 -21761584 + AT_rich Low_complexity Low_complexity 1 21 0 2289 69 24 3 chr1 220902828 220903116 -21761237 + AluY SINE Alu 1 294 -17 441 233 72 134 chr1 220903330 220903423 -21760930 - MER112 DNA MER1_type -11 249 152 1168 218 81 25 chr1 220903423 220903707 -21760646 - AluJo SINE Alu -2 300 1 441 233 72 134 chr1 220903707 220903875 -21760478 - MER112 DNA MER1_type -108 152 4 22 35 0 0 chr1 220904199 220904228 -21760125 + AT_rich Low_complexity Low_complexity 1 29 0 2489 60 0 0 chr1 220905237 220905538 -21758815 + AluY SINE Alu 1 301 -10 2004 109 57 0 chr1 220906222 220906505 -21757848 + AluSc SINE Alu 3 301 -8 198 287 119 56 chr1 220906792 220906935 -21757418 - MIR SINE MIR -101 161 10 1010 135 62 0 chr1 220908152 220908330 -21756023 + L1PB4 LINE L1 5965 6153 -3 2339 47 40 14 chr1 220908336 220908632 -21755721 + AluY SINE Alu 1 304 -7 31 44 0 0 chr1 220908919 220908964 -21755389 + AT_rich Low_complexity Low_complexity 1 45 0 328 231 231 19 chr1 220909429 220909533 -21754820 - MIR SINE MIR -117 145 20 298 250 128 56 chr1 220910535 220910731 -21753622 + L1MC4a LINE L1 5907 6116 -1692 3066 133 77 40 chr1 220910740 220911347 -21753006 - L1MC1 LINE L1 0 6333 5704 1285 137 163 37 chr1 220911345 220912304 -21752049 - L1MCa LINE L1 -4125 2301 1179 * 938 137 33 0 chr1 220912417 220912570 -21751783 - L1MCa LINE L1 -6233 193 36 3829 132 47 8 chr1 220912631 220913247 -21751106 - LTR9B LTR ERV1 0 644 5 21 0 0 0 chr1 220913279 220913300 -21751053 + AT_rich Low_complexity Low_complexity 1 21 0 3800 224 39 18 chr1 220913708 220915233 -21749120 + L1MD2 LINE L1 4573 6133 -226 539 299 26 0 chr1 220915339 220915493 -21748860 - LTR16A LTR ERVL -196 254 97 818 184 7 20 chr1 220915778 220915930 -21748423 + L1MDa LINE L1 21 170 -6370 266 241 60 12 chr1 220915942 220916025 -21748328 + L1P LINE L1 3629 3715 -2431 * 1534 17 0 0 chr1 220916020 220916196 -21748157 + L1PA4 LINE L1 5605 5780 -375 16357 31 6 0 chr1 220916198 220918926 -21745427 + L1PA2 LINE L1 3416 6155 0 3148 31 0 5 chr1 220918972 220919357 -21744996 + L1PA4 LINE L1 5770 6152 -3 634 252 0 0 chr1 220919371 220919514 -21744839 + L1M4 LINE L1 3700 3842 -2304 1870 164 3 0 chr1 220920232 220920524 -21743829 - AluJb SINE Alu -19 293 1 236 211 58 0 chr1 220920527 220920579 -21743774 + MIR SINE MIR 98 152 -110 207 0 0 0 chr1 220920984 220921007 -21743346 + (TA)n Simple_repeat Simple_repeat 2 24 0 2032 114 0 33 chr1 220921007 220921314 -21743039 - AluSx SINE Alu -15 297 1 310 333 50 57 chr1 220921799 220921958 -21742395 - L1MC/D LINE L1 -2177 5631 5474 848 156 19 19 chr1 220922852 220923006 -21741347 - MER20 DNA MER1_type 0 219 66 552 155 14 140 chr1 220923102 220923309 -21741044 + L1MC5 LINE L1 7731 7911 -50 36 53 0 13 chr1 220923322 220923363 -21740990 + AT_rich Low_complexity Low_complexity 1 42 -32 1482 174 17 38 chr1 220923363 220923651 -21740702 - AluJo SINE Alu -30 282 1 36 53 0 13 chr1 220923651 220923684 -21740669 + AT_rich Low_complexity Low_complexity 42 74 0 2061 92 4 0 chr1 220924009 220924280 -21740073 + AluY SINE Alu 1 272 -39 296 256 11 11 chr1 220924419 220924509 -21739844 + L1MC4a LINE L1 5793 5882 -1926 195 42 0 0 chr1 220924595 220924619 -21739734 + (TG)n Simple_repeat Simple_repeat 1 24 0 1755 164 21 7 chr1 220924848 220925135 -21739218 + AluJo SINE Alu 1 291 -21 427 333 81 14 chr1 220925222 220925578 -21738775 + L1M4 LINE L1 5272 5649 -525 348 186 29 14 chr1 220926331 220926401 -21737952 - Tigger5 DNA MER2_type -2 2321 2251 348 185 0 0 chr1 220926370 220926424 -21737929 - Tigger5 DNA MER2_type -2268 55 2 989 220 88 126 chr1 220926610 220927207 -21737146 - MER77 LTR ERV1 -7 598 38 512 216 24 23 chr1 220927751 220927882 -21736471 - L1MD3 LINE L1 0 7979 6244 1490 183 39 21 chr1 220928899 220929184 -21735169 - AluJb SINE Alu -21 291 2 626 319 114 23 chr1 220929610 220929952 -21734401 - LTR16A LTR ERVL 0 450 78 1754 246 87 43 chr1 220930006 220930535 -21733818 - MLT1G1 LTR MaLR -31 564 13 517 299 43 69 chr1 220930648 220930952 -21733401 + L1ME LINE L1 18 313 -5757 1671 242 119 35 chr1 220930957 220931728 -21732625 + L1ME LINE L1 355 1060 -5020 2442 57 0 7 chr1 220931728 220932027 -21732326 + AluY SINE Alu 1 297 -14 1671 242 119 35 chr1 220932027 220932300 -21732053 + L1ME LINE L1 1060 1309 -4771 2034 135 3 3 chr1 220932300 220932603 -21731750 + AluSx SINE Alu 1 303 -9 1671 242 119 35 chr1 220932603 220932820 -21731533 + L1ME LINE L1 1309 1711 -4369 454 196 0 21 chr1 220932802 220932899 -21731454 + L1MCc LINE L1 102 196 -6227 * 314 325 153 22 chr1 220932974 220933202 -21731151 - L2 LINE L2 -1206 2108 1851 630 278 88 45 chr1 220934596 220935060 -21729293 - HAL1 LINE L1 -4 2503 2020 349 286 68 53 chr1 220935163 220935369 -21728984 - HAL1 LINE L1 -2273 234 26 231 146 0 0 chr1 220935795 220935836 -21728517 + (TG)n Simple_repeat Simple_repeat 1 41 0 1079 173 26 21 chr1 220935860 220936051 -21728302 - AluJo SINE Alu -30 282 91 466 204 31 0 chr1 220936355 220936453 -21727900 - MER94 DNA DNA 0 134 34 308 249 182 22 chr1 220936498 220936723 -21727630 + L1M4 LINE L1 4816 5076 -1070 32 0 0 0 chr1 220936762 220936794 -21727559 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr1 220937792 220937816 -21726537 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr1 220938586 220938616 -21725737 + AT_rich Low_complexity Low_complexity 1 30 0 615 300 125 27 chr1 220939296 220939663 -21724690 - L2 LINE L2 -939 2375 1973 723 239 93 24 chr1 220939813 220940018 -21724335 + MIR SINE MIR 44 262 0 2414 66 10 0 chr1 220940301 220940604 -21723749 + AluSx SINE Alu 1 306 -6 184 305 116 89 chr1 220940766 220940956 -21723397 + L2 LINE L2 3075 3269 -3 2131 70 0 7 chr1 220941029 220941302 -21723051 + AluY SINE Alu 39 309 -2 21 36 0 0 chr1 220941421 220941449 -21722904 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 220943989 220944012 -21720341 + AT_rich Low_complexity Low_complexity 1 23 0 1806 165 3 16 chr1 220944687 220945003 -21719350 + AluJo SINE Alu 1 312 0 27 0 0 0 chr1 220946434 220946461 -21717892 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 220946561 220946582 -21717771 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr1 220946678 220946718 -21717635 + AT_rich Low_complexity Low_complexity 1 40 0 307 192 77 13 chr1 220946983 220947061 -21717292 + MER63 DNA MER1_type 9 717 -119 986 264 137 13 chr1 220950831 220951828 -21712525 - L1ME3A LINE L1 -266 5904 4784 759 252 101 9 chr1 220951984 220952202 -21712151 - MIR SINE MIR -6 256 19 227 224 66 40 chr1 220952496 220952572 -21711781 + L1ME1 LINE L1 47 124 -6418 2885 247 74 12 chr1 220952576 220953333 -21711020 + L1ME1 LINE L1 4953 5661 -1003 1409 201 51 20 chr1 220953333 220953626 -21710727 + AluJb SINE Alu 5 306 -6 2885 247 74 12 chr1 220953626 220954473 -21709880 + L1ME1 LINE L1 5661 6660 -4 667 265 82 0 chr1 220954834 220955030 -21709323 + MER58C DNA MER1_type 4 215 0 1179 234 110 72 chr1 220955051 220955534 -21708819 - MLT2B1 LTR ERVL 0 520 20 2246 113 0 0 chr1 220955756 220956056 -21708297 - AluSx SINE Alu -12 300 1 389 314 56 55 chr1 220956655 220957530 -21706823 + L1M4 LINE L1 1218 1926 -4720 * 830 209 58 117 chr1 220957520 220957557 -21706796 + L1MC5 LINE L1 7410 7448 -513 2320 103 0 3 chr1 220957557 220957869 -21706484 - AluY SINE Alu 0 311 1 830 209 58 117 chr1 220957869 220957955 -21706398 + L1MC5 LINE L1 7448 7537 -424 1315 189 10 65 chr1 220957955 220958262 -21706091 + AluJo SINE Alu 1 290 -22 830 209 58 117 chr1 220958262 220958546 -21705807 + L1MC5 LINE L1 7537 7782 -179 2179 111 0 3 chr1 220958546 220958843 -21705510 + AluSq SINE Alu 1 296 -17 830 209 58 117 chr1 220958843 220958964 -21705389 + L1MC5 LINE L1 7782 7909 -52 1940 137 48 23 chr1 220960144 220960495 -21703858 + MER46B DNA MER2_type 1 235 -1 1008 163 199 0 chr1 220961283 220961479 -21702874 - MER46A DNA MER2_type 0 236 2 764 250 71 5 chr1 220962978 220963162 -21701191 - MIR SINE MIR -56 206 11 2153 124 7 0 chr1 220963743 220964049 -21700304 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr1 220967648 220967669 -21696684 + AT_rich Low_complexity Low_complexity 1 21 0 816 240 32 18 chr1 220967674 220967891 -21696462 - MER58A DNA MER1_type -3 221 2 22 56 0 0 chr1 220968410 220968446 -21695907 + AT_rich Low_complexity Low_complexity 1 36 0 180 256 0 0 chr1 220969129 220969172 -21695181 + L2 LINE L2 3267 3309 -4 309 217 152 33 chr1 220969581 220969673 -21694680 + L2 LINE L2 3207 3309 -4 539 198 58 8 chr1 220971124 220971245 -21693108 - L2 LINE L2 -5 3308 3182 37 39 0 0 chr1 220971913 220971964 -21692389 + AT_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr1 220972051 220972083 -21692270 + AT_rich Low_complexity Low_complexity 1 32 0 470 313 30 12 chr1 220973198 220973364 -21690989 + MIR SINE MIR 55 223 -39 2345 93 0 6 chr1 220973710 220974022 -21690331 - AluY SINE Alu -1 310 1 208 351 65 13 chr1 220974788 220974865 -21689488 - L3 LINE CR1 -2 1575 1495 299 98 0 0 chr1 220975005 220975074 -21689279 - Alu SINE Alu 0 310 242 7869 54 3 7 chr1 220975175 220976179 -21688174 - L1P LINE L1 -4550 1596 597 * 10890 107 5 8 chr1 220976177 220977853 -21686500 - L1P LINE L1 -2167 3979 2309 8070 35 0 0 chr1 220978402 220980134 -21684219 - L1PA3 LINE L1 -2 6153 4421 3150 45 1 1 chr1 220980134 220980541 -21683812 + L1P LINE L1 4056 4461 -1685 199 278 0 0 chr1 220980573 220980627 -21683726 + L2 LINE L2 3213 3266 -6 1681 151 68 0 chr1 220980861 220981172 -21683181 + L1PA16 LINE L1 5827 6158 -8 318 310 29 67 chr1 220982558 220982871 -21681482 + HAL1b LINE L1 345 645 -703 385 304 107 74 chr1 220982871 220983292 -21681061 + HAL1 LINE L1 290 724 -1783 1837 163 3 0 chr1 220983463 220983752 -21680601 + AluJb SINE Alu 8 297 -15 1543 248 176 66 chr1 220983816 220985129 -21679224 + HAL1 LINE L1 1047 2503 -4 682 286 95 45 chr1 220985184 220985785 -21678568 + L1ME LINE L1 5107 5738 -383 29 67 0 13 chr1 220986103 220986131 -21678222 + AT_rich Low_complexity Low_complexity 1 28 -46 2225 107 0 3 chr1 220986131 220986430 -21677923 - AluSc SINE Alu -11 298 1 29 67 0 13 chr1 220986430 220986476 -21677877 + AT_rich Low_complexity Low_complexity 28 74 0 209 32 0 32 chr1 220987175 220987206 -21677147 + (TA)n Simple_repeat Simple_repeat 2 31 0 1218 139 37 9 chr1 220988122 220988337 -21676016 + L1PA16 LINE L1 5937 6157 -9 633 244 55 24 chr1 220988343 220988507 -21675846 - MIR SINE MIR -14 248 80 402 236 89 49 chr1 220989792 220989915 -21674438 - L2 LINE L2 -4 3309 3182 8709 103 23 10 chr1 220990099 220991100 -21673253 - HSMAR2 DNA Mariner -1 1301 278 2741 86 8 0 chr1 220991100 220991461 -21672892 - THE1B LTR MaLR 0 364 1 8709 103 23 10 chr1 220991461 220991742 -21672611 - HSMAR2 DNA Mariner -1024 278 2 449 317 78 6 chr1 220991828 220991995 -21672358 - L3 LINE CR1 -17 1560 1382 221 365 140 21 chr1 220991998 220992283 -21672070 - L2 LINE L2 -993 2321 2003 2553 39 0 7 chr1 220992760 220993068 -21671285 + AluY SINE Alu 1 306 -5 549 214 116 0 chr1 220993083 220993195 -21671158 + FLAM_A SINE Alu 6 130 -12 324 292 97 26 chr1 220995249 220995475 -21668878 + L2 LINE L2 2096 2337 -977 248 171 5 146 chr1 220995757 220995852 -21668501 + MIR SINE MIR 17 103 -105 29 0 0 0 chr1 220995937 220995966 -21668387 + AT_rich Low_complexity Low_complexity 1 29 0 1218 229 108 48 chr1 220996511 220996947 -21667406 - MLT1H LTR MaLR -7 542 81 680 267 131 25 chr1 220997451 220997687 -21666666 + MIR SINE MIR 2 262 0 317 313 81 0 chr1 220998241 220998340 -21666013 + L2 LINE L2 3164 3270 -2 254 259 169 42 chr1 220998446 220998612 -21665741 + MIR SINE MIR 70 256 -6 23 33 0 0 chr1 220999219 220999249 -21665104 + AT_rich Low_complexity Low_complexity 1 30 0 2286 97 7 0 chr1 220999338 220999637 -21664716 - AluSp SINE Alu -12 301 1 1507 197 10 27 chr1 221001354 221001653 -21662700 - AluJo SINE Alu -16 296 3 184 371 16 0 chr1 221001740 221001802 -21662551 - L2 LINE L2 -69 3203 3141 1482 168 95 11 chr1 221002401 221002663 -21661690 + AluJo SINE Alu 5 288 -24 232 234 16 31 chr1 221002866 221002930 -21661423 - L2 LINE L2 0 3313 3251 22 88 0 0 chr1 221003873 221003930 -21660423 + AT_rich Low_complexity Low_complexity 1 57 0 2047 150 0 0 chr1 221004223 221004529 -21659824 - AluSx SINE Alu -6 306 1 1090 296 100 11 chr1 221004758 221005596 -21658757 - L1ME3 LINE L1 -213 5949 5030 21 0 0 0 chr1 221006084 221006105 -21658248 + AT_rich Low_complexity Low_complexity 1 21 0 367 240 21 21 chr1 221006278 221006374 -21657979 - MIR SINE MIR -156 106 11 2034 142 0 7 chr1 221007044 221007340 -21657013 - AluSx SINE Alu -18 294 1 2310 83 0 25 chr1 221007438 221007752 -21656601 - AluSc SINE Alu -3 306 1 333 227 227 8 chr1 221008075 221008152 -21656201 + MER69A DNA AcHobo 2 61 -2465 14131 131 32 14 chr1 221008152 221009294 -21655059 + Tigger1 DNA MER2_type 1 1120 -1298 2312 101 3 0 chr1 221009294 221009591 -21654762 + AluSp SINE Alu 1 298 -15 14131 131 32 14 chr1 221009591 221010822 -21653531 + Tigger1 DNA MER2_type 1120 2418 0 333 227 227 8 chr1 221010822 221010872 -21653481 + MER69A DNA AcHobo 61 157 -20 1024 136 0 13 chr1 221011274 221011457 -21652896 + FRAM SINE Alu 1 178 0 1411 166 40 50 chr1 221013935 221014047 -21650306 + AluJo SINE Alu 1 113 -199 2170 108 7 0 chr1 221014047 221014335 -21650018 - AluSg SINE Alu -10 300 11 1411 166 40 50 chr1 221014335 221014523 -21649830 + AluJo SINE Alu 113 298 -14 21 0 0 0 chr1 221015739 221015760 -21648593 + AT_rich Low_complexity Low_complexity 1 21 0 303 310 0 0 chr1 221016538 221016625 -21647728 - L2 LINE L2 0 3313 3227 21 0 0 0 chr1 221016863 221016884 -21647469 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 221018191 221018223 -21646130 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr1 221019594 221019630 -21644723 + AT_rich Low_complexity Low_complexity 1 36 0 1782 168 0 24 chr1 221019774 221020065 -21644288 + AluJb SINE Alu 3 286 -26 21 36 0 0 chr1 221020981 221021009 -21643344 + AT_rich Low_complexity Low_complexity 1 28 0 211 204 259 0 chr1 221021327 221021381 -21642972 - L2 LINE L2 0 3313 3246 1954 95 3 58 chr1 221022495 221022833 -21641520 - AluSg SINE Alu 0 322 1 346 284 91 23 chr1 221022969 221023145 -21641208 - MIR SINE MIR -67 195 8 184 319 88 22 chr1 221024630 221024721 -21639632 - L2 LINE L2 -40 3232 3136 844 309 73 31 chr1 221024847 221025326 -21639027 - L2 LINE L2 -380 2934 2436 189 288 68 76 chr1 221025509 221025627 -21638726 - L2 LINE L2 -3 3269 3153 267 314 0 51 chr1 221026365 221026451 -21637902 - L2 LINE L2 -5 3308 3228 1731 207 58 88 chr1 221026451 221027006 -21637347 - MLT1F LTR MaLR 0 542 5 267 314 0 51 chr1 221027006 221027037 -21637316 - L2 LINE L2 -85 3228 3197 398 199 137 106 chr1 221027282 221027508 -21636845 - MER46C DNA MER2_type -2 336 104 2355 103 0 0 chr1 221027509 221027871 -21636482 - AluSx SINE Alu 0 362 1 482 202 10 10 chr1 221027871 221027970 -21636383 - MER46C DNA MER2_type -226 112 14 426 255 124 21 chr1 221028907 221029052 -21635301 - MIR SINE MIR -79 183 24 387 0 0 0 chr1 221029359 221029402 -21634951 + (TTA)n Simple_repeat Simple_repeat 3 45 0 7758 80 10 0 chr1 221029402 221030020 -21634333 - L1PA7 LINE L1 -18 6136 5526 2339 91 0 0 chr1 221030020 221030316 -21634037 + AluY SINE Alu 1 296 -15 7758 80 10 0 chr1 221030316 221031528 -21632825 - L1PA7 LINE L1 -628 5526 4305 11341 81 16 1 chr1 221031528 221033202 -21631151 + L1PA7 LINE L1 2629 4327 -1819 200 228 70 0 chr1 221033221 221033278 -21631075 - MER5B DNA MER1_type -77 101 41 206 267 33 0 chr1 221034015 221034075 -21630278 - L2 LINE L2 -6 3266 3205 202 231 0 31 chr1 221035246 221035311 -21629042 + CT-rich Low_complexity Low_complexity 5 67 0 201 302 0 0 chr1 221035971 221036024 -21628329 - MER5B DNA MER1_type -5 173 121 1398 164 0 60 chr1 221036260 221036510 -21627843 - AluJb SINE Alu -77 235 1 26 74 0 0 chr1 221036758 221036812 -21627541 + AT_rich Low_complexity Low_complexity 1 54 0 1309 176 9 0 chr1 221037210 221037431 -21626922 - MER58A DNA MER1_type -1 223 1 21 0 0 0 chr1 221037590 221037611 -21626742 + AT_rich Low_complexity Low_complexity 1 21 0 191 163 0 23 chr1 221038586 221038629 -21625724 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 867 171 14 0 chr1 221039039 221039185 -21625168 + AluJb SINE Alu 135 282 -30 888 140 0 37 chr1 221039223 221039359 -21624994 + FLAM_C SINE Alu 1 131 -2 2216 99 17 0 chr1 221039550 221039844 -21624509 - AluSx SINE Alu -13 299 1 275 300 17 39 chr1 221039895 221040075 -21624278 + L1MEc LINE L1 36 211 -6185 557 341 99 16 chr1 221040498 221041002 -21623351 - L1MEc LINE L1 -3174 3041 2496 25 31 0 0 chr1 221041013 221041045 -21623308 + AT_rich Low_complexity Low_complexity 1 32 0 269 314 0 0 chr1 221041079 221041200 -21623153 - L1MEc LINE L1 -3941 2455 2335 668 183 12 12 chr1 221041610 221041774 -21622579 + L1M4 LINE L1 4978 5141 -1005 1592 220 83 57 chr1 221041918 221042446 -21621907 - MLT2B3 LTR ERVL -10 544 3 502 196 68 1 chr1 221042449 221042627 -21621726 + L1MD2 LINE L1 6196 7986 -9 355 235 81 29 chr1 221042658 221042794 -21621559 - MER31-int LTR ERV1 -875 4061 3919 565 249 49 40 chr1 221042801 221043026 -21621327 - L2 LINE L2 -1054 2260 2034 24 32 0 0 chr1 221044745 221044776 -21619577 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr1 221044865 221044889 -21619464 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1943 120 7 0 chr1 221044892 221045166 -21619187 - AluSx SINE Alu -32 280 5 2648 52 0 0 chr1 221045435 221045741 -21618612 - AluY SINE Alu -5 306 1 1500 179 41 26 chr1 221045745 221046086 -21618267 - L1MB8 LINE L1 -6 6172 5827 1781 121 15 95 chr1 221046260 221046301 -21618052 - THE1B LTR MaLR 0 364 321 2204 120 3 0 chr1 221046301 221046602 -21617751 + AluSp SINE Alu 1 302 -11 1781 121 15 95 chr1 221046602 221046950 -21617403 - THE1B LTR MaLR -43 321 6 625 259 63 77 chr1 221046958 221048003 -21616350 + L1MEc LINE L1 842 1877 -4457 759 282 25 33 chr1 221048875 221048980 -21615373 + L1MC5 LINE L1 6476 6580 -1313 1748 132 4 8 chr1 221048980 221049231 -21615122 + AluSx SINE Alu 1 250 -62 759 282 25 33 chr1 221049231 221049595 -21614758 + L1MC5 LINE L1 6580 7022 -871 32 0 0 0 chr1 221049775 221049807 -21614546 + AT_rich Low_complexity Low_complexity 1 32 0 1287 138 119 35 chr1 221050284 221050545 -21613808 - AluSx SINE Alu -1 311 29 4072 149 66 5 chr1 221050545 221051351 -21613002 + L1MB3 LINE L1 5327 6181 -2 22 0 0 0 chr1 221051351 221051373 -21612980 + AT_rich Low_complexity Low_complexity 1 22 0 201 74 0 0 chr1 221051452 221051479 -21612874 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr1 221051500 221051521 -21612832 + AT_rich Low_complexity Low_complexity 1 21 0 233 299 62 26 chr1 221051866 221052060 -21612293 - L1MEd LINE L1 -4775 1609 1409 2077 142 0 3 chr1 221052083 221052394 -21611959 - AluJb SINE Alu -2 310 1 1072 297 89 63 chr1 221052414 221053537 -21610816 - L1MEd LINE L1 -4885 1487 329 1756 78 0 13 chr1 221053537 221053768 -21610585 - AluY SINE Alu 0 311 84 1072 297 89 63 chr1 221053768 221053843 -21610510 - L1MEd LINE L1 -6043 329 257 751 187 0 0 chr1 221054038 221054161 -21610192 - FLAM_C SINE Alu -8 125 3 675 307 41 27 chr1 221055273 221055641 -21608712 + L1ME LINE L1 5368 5740 -381 370 267 109 0 chr1 221055997 221056098 -21608255 + MIR SINE MIR 1 112 -150 2035 145 3 3 chr1 221056422 221056733 -21607620 - AluY SINE Alu 0 311 1 3084 189 33 22 chr1 221057127 221057769 -21606584 + MER82 DNA MER2_type 1 649 -4 2229 109 0 0 chr1 221058110 221058403 -21605950 + AluSg SINE Alu 1 293 -17 1044 291 74 0 chr1 221058682 221059032 -21605321 + L2 LINE L2 941 1316 -1998 976 171 33 57 chr1 221059032 221059243 -21605110 - AluJo SINE Alu -9 303 98 23 0 0 0 chr1 221059521 221059544 -21604809 + AT_rich Low_complexity Low_complexity 1 23 0 1279 329 98 14 chr1 221059796 221060461 -21603892 + L2 LINE L2 567 1287 -2027 411 278 37 37 chr1 221060463 221060625 -21603728 + L2 LINE L2 1910 2071 -1243 1498 108 0 0 chr1 221060727 221060922 -21603431 - AluY SINE Alu -116 195 1 262 323 19 63 chr1 221061807 221061965 -21602388 - L2 LINE L2 0 3313 3163 * 1216 300 141 6 chr1 221061958 221062484 -21601869 - L2 LINE L2 -1917 1397 801 324 48 0 0 chr1 221062495 221062537 -21601816 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6327 64 27 50 chr1 221062537 221064380 -21599973 - SVA Other Other -518 1363 5 228 304 11 54 chr1 221064831 221064923 -21599430 + Tigger8 DNA MER2_type 77 164 -502 501 280 124 19 chr1 221065041 221065298 -21599055 - MLT1L LTR MaLR -328 287 4 466 325 171 4 chr1 221065315 221065595 -21598758 - L2 LINE L2 -2583 731 405 2247 111 3 0 chr1 221065620 221065918 -21598435 - AluSx SINE Alu -8 304 6 205 161 0 0 chr1 221066194 221066225 -21598128 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 56 0 0 chr1 221066466 221066502 -21597851 + AT_rich Low_complexity Low_complexity 1 36 0 370 344 25 25 chr1 221066530 221066693 -21597660 + Tigger8 DNA MER2_type 2 164 -502 1748 165 3 0 chr1 221066801 221067086 -21597267 - AluJb SINE Alu -2 310 25 271 333 36 87 chr1 221067440 221067692 -21596661 - L2 LINE L2 -1 3271 3033 1282 290 31 45 chr1 221067909 221068519 -21595834 - L2 LINE L2 -3 3310 2712 1946 216 139 18 chr1 221069301 221069955 -21594398 - L1M4 LINE L1 -1730 4416 3684 548 28 0 14 chr1 221069964 221070035 -21594318 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1571 151 87 17 chr1 221070271 221070570 -21593783 + MER54B LTR ERVL 460 779 -14 36 53 0 0 chr1 221070570 221070627 -21593726 + AT_rich Low_complexity Low_complexity 1 57 0 665 171 0 18 chr1 221070645 221070756 -21593597 - MER8 DNA MER2_type 0 239 131 2308 250 34 29 chr1 221070759 221070873 -21593480 - L1MDa LINE L1 -5910 630 518 1714 147 55 14 chr1 221070873 221071165 -21593188 - AluSx SINE Alu -7 305 2 2308 250 34 29 chr1 221071165 221071663 -21592690 - L1MDa LINE L1 -6022 518 15 313 347 41 25 chr1 221071663 221071859 -21592494 + L2 LINE L2 2688 2886 -428 225 391 8 23 chr1 221072288 221072421 -21591932 + L2 LINE L2 3134 3264 -8 29 0 0 0 chr1 221072431 221072460 -21591893 + AT_rich Low_complexity Low_complexity 1 29 0 1925 144 10 7 chr1 221073183 221073475 -21590878 - AluSx SINE Alu -19 293 1 2390 89 0 16 chr1 221074393 221074707 -21589646 + AluSx SINE Alu 3 311 -1 384 245 31 0 chr1 221075263 221075361 -21588992 - MER5A DNA MER1_type -80 109 9 2097 128 43 18 chr1 221075361 221075690 -21588663 + MER1B DNA MER1_type 1 337 0 422 262 65 9 chr1 221075951 221076058 -21588295 + MIR3 SINE MIR 48 160 -48 28 0 0 0 chr1 221077066 221077094 -21587259 + AT_rich Low_complexity Low_complexity 1 28 0 228 260 0 82 chr1 221077806 221077879 -21586474 + LTR68 LTR ERV1 262 328 -412 1188 158 5 14 chr1 221078064 221078279 -21586074 - L1M2 LINE L1 -793 5519 5307 481 284 106 12 chr1 221078302 221078817 -21585536 - L1ME LINE L1 -584 5565 5002 257 173 0 148 chr1 221078851 221078880 -21585473 - L1ME LINE L1 -1538 4591 4559 1737 174 17 14 chr1 221078880 221079174 -21585179 + AluJb SINE Alu 1 295 -17 257 173 0 148 chr1 221079174 221079225 -21585128 - L1ME LINE L1 -1570 4559 4523 641 260 57 69 chr1 221079229 221079579 -21584774 + LTR68 LTR ERV1 3 348 -392 1160 265 19 16 chr1 221079909 221080275 -21584078 - L1ME LINE L1 -1978 4151 3785 870 279 35 9 chr1 221080300 221080529 -21583824 - MIR SINE MIR -4 258 24 588 309 94 16 chr1 221080700 221081201 -21583152 - L1ME LINE L1 -3251 2878 2339 696 154 15 0 chr1 221081342 221081472 -21582881 - L1MB2 LINE L1 -2 6169 6038 1196 132 127 5 chr1 221081647 221081844 -21582509 - MER46A DNA MER2_type 0 236 16 1516 195 28 47 chr1 221082471 221082789 -21581564 - AluJb SINE Alu 0 312 1 554 336 79 18 chr1 221082833 221083163 -21581190 - L1ME LINE L1 -5209 910 561 47 44 0 0 chr1 221083914 221083982 -21580371 + AT_rich Low_complexity Low_complexity 1 68 0 254 248 0 155 chr1 221084652 221084737 -21579616 + MIR SINE MIR 32 92 -170 2218 86 17 0 chr1 221084737 221085028 -21579325 + AluSp SINE Alu 1 296 -17 254 248 0 155 chr1 221085028 221085071 -21579282 + MIR SINE MIR 92 140 -122 195 344 93 53 chr1 221085436 221085587 -21578766 + L2 LINE L2 3116 3272 0 263 309 235 7 chr1 221085884 221086033 -21578320 - MIR3 SINE MIR -7 201 19 280 250 259 0 chr1 221086113 221086229 -21578124 + MIR SINE MIR 107 252 -10 502 250 34 0 chr1 221086278 221086426 -21577927 + L1M4 LINE L1 2495 2647 -3499 989 172 54 11 chr1 221086429 221086615 -21577738 - MER2 DNA MER2_type -1 344 151 555 167 0 11 chr1 221086623 221086713 -21577640 + Tigger3(Golem) DNA MER2_type 20 108 -2921 3497 127 48 72 chr1 221086713 221086854 -21577499 + Tigger3b DNA MER2_type 488 631 -2398 2242 113 0 0 chr1 221086854 221087146 -21577207 + AluSx SINE Alu 1 292 -20 3497 127 48 72 chr1 221087146 221087767 -21576586 + Tigger3b DNA MER2_type 631 1232 0 939 164 0 7 chr1 221087767 221087918 -21576435 - MER2 DNA MER2_type -193 152 3 2360 215 31 104 chr1 221087918 221088940 -21575413 + L1M4 LINE L1 2646 3593 -2553 1603 215 96 0 chr1 221089042 221089470 -21574883 + L1M4 LINE L1 4653 5121 -1025 783 190 73 6 chr1 221089448 221089627 -21574726 + L1MB4 LINE L1 3555 3745 -2401 * 3403 177 32 13 chr1 221089612 221090439 -21573914 + L1MB4 LINE L1 5110 5949 -231 457 148 37 0 chr1 221090544 221090625 -21573728 - MLT1C LTR MaLR -380 87 4 23 54 0 0 chr1 221092351 221092388 -21571965 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 221093892 221093913 -21570440 + AT_rich Low_complexity Low_complexity 1 21 0 268 312 232 0 chr1 221094213 221094351 -21570002 - L2 LINE L2 0 3272 3103 312 27 0 0 chr1 221094406 221094443 -21569910 + (CA)n Simple_repeat Simple_repeat 1 37 0 596 250 0 0 chr1 221094469 221094597 -21569756 + FLAM_A SINE Alu 15 142 0 262 337 255 9 chr1 221094644 221094970 -21569383 - L2 LINE L2 -339 2975 2570 192 40 0 0 chr1 221095127 221095152 -21569201 + (CA)n Simple_repeat Simple_repeat 1 25 0 513 281 0 0 chr1 221095178 221095306 -21569047 + FLAM_A SINE Alu 15 142 0 487 352 185 10 chr1 221095353 221095833 -21568520 - L2 LINE L2 -339 2975 2412 526 288 169 37 chr1 221095874 221096373 -21567980 - L2 LINE L2 0 3313 2740 303 241 0 0 chr1 221096378 221096436 -21567917 - Tigger3b DNA MER2_type 0 1231 1174 577 81 0 0 chr1 221096454 221096528 -21567825 - Tigger3b DNA MER2_type -283 948 875 1976 160 52 22 chr1 221096530 221096899 -21567454 - Tigger3b DNA MER2_type -777 454 75 232 116 163 0 chr1 221096895 221096938 -21567415 + Tigger3(Golem) DNA MER2_type 40 89 -2940 * 237 256 0 0 chr1 221096973 221097016 -21567337 - Tigger3(Golem) DNA MER2_type -2985 44 2 1939 264 54 68 chr1 221097018 221097754 -21566599 - L2 LINE L2 -566 2748 2023 4327 131 30 16 chr1 221097754 221098458 -21565895 - MER50 LTR ERV1 -20 714 1 739 252 231 32 chr1 221098458 221098930 -21565423 - L2 LINE L2 -1290 2024 1459 592 347 154 16 chr1 221098962 221099573 -21564780 - L2 LINE L2 -964 2350 1656 2233 116 0 3 chr1 221100009 221100310 -21564043 + AluSx SINE Alu 2 301 -11 1520 204 50 32 chr1 221101287 221101724 -21562629 - LTR56 LTR ERV1 0 445 1 1375 188 97 22 chr1 221102097 221102511 -21561842 - LTR56 LTR ERV1 0 445 1 381 197 92 0 chr1 221102583 221102659 -21561694 + L1MC4 LINE L1 7397 7479 -563 1762 221 88 40 chr1 221102761 221103355 -21560998 + L1MC4 LINE L1 7419 8040 -2 419 276 184 18 chr1 221103630 221103858 -21560495 + L2 LINE L2 3047 3312 -1 2168 148 101 5 chr1 221104431 221104816 -21559537 - MSTB LTR MaLR -4 422 1 2108 124 7 0 chr1 221105228 221105527 -21558826 - AluSx SINE Alu -11 301 1 638 270 56 19 chr1 221108881 221109096 -21555257 - MER58A DNA MER1_type 0 224 2 218 352 0 0 chr1 221109110 221109164 -21555189 + MIR SINE MIR 23 76 -186 184 330 60 20 chr1 221112269 221112369 -21551984 - MIR SINE MIR -69 139 36 181 320 0 0 chr1 221114937 221114987 -21549366 - L2 LINE L2 -2 3270 3221 247 264 0 0 chr1 221116342 221116395 -21547958 + (CA)n Simple_repeat Simple_repeat 2 54 0 390 262 16 49 chr1 221119189 221119556 -21544797 + (TGGG)n Simple_repeat Simple_repeat 1 354 0 432 244 41 12 chr1 221119692 221119864 -21544489 + (TGGG)n Simple_repeat Simple_repeat 2 178 0 324 242 11 70 chr1 221119894 221120080 -21544273 + (TGGG)n Simple_repeat Simple_repeat 3 177 0 710 204 77 0 chr1 221120765 221120946 -21543407 - MER33 DNA MER1_type -125 199 5 378 279 49 16 chr1 221122839 221122961 -21541392 + MIR3 SINE MIR 44 169 -39 205 302 32 0 chr1 221123980 221124043 -21540310 + CT-rich Low_complexity Low_complexity 2 66 0 605 322 66 33 chr1 221124230 221124723 -21539630 + L1MCa LINE L1 1153 1628 -4798 2063 129 23 0 chr1 221124723 221125026 -21539327 - AluY SINE Alu -1 310 1 605 322 66 33 chr1 221125026 221125141 -21539212 + L1MCa LINE L1 1628 1738 -4688 1586 152 0 8 chr1 221125141 221125398 -21538955 + AluSq SINE Alu 58 312 -1 605 322 66 33 chr1 221125398 221125758 -21538595 + L1MCa LINE L1 1738 2085 -4341 1878 141 102 0 chr1 221125758 221126071 -21538282 + MER7A DNA MER2_type 1 343 -3 1772 149 57 0 chr1 221126072 221126354 -21537999 + AluSx SINE Alu 1 298 -14 605 322 66 33 chr1 221126354 221126787 -21537566 + L1MCa LINE L1 2084 2728 -3698 693 36 0 0 chr1 221126789 221126872 -21537481 + AluY SINE Alu 1 83 -227 1104 108 0 0 chr1 221126876 221127024 -21537329 + AluSg/x SINE Alu 151 298 -14 341 298 147 0 chr1 221127024 221127269 -21537084 + L1MCa LINE L1 2721 3001 -3425 345 284 4 82 chr1 221127806 221127981 -21536372 + MER112 DNA MER1_type 11 161 -99 1918 110 0 11 chr1 221127981 221128253 -21536100 - AluSx SINE Alu -21 291 23 345 284 4 82 chr1 221128253 221128334 -21536019 + MER112 DNA MER1_type 161 247 -13 244 254 64 55 chr1 221131944 221132054 -21532299 + MIR SINE MIR 46 156 -106 337 261 46 11 chr1 221132229 221132370 -21531983 - MIR SINE MIR -14 194 46 2296 91 0 0 chr1 221132426 221132723 -21531630 + AluSx SINE Alu 7 303 -9 296 332 105 37 chr1 221133372 221133562 -21530791 + MIR SINE MIR 16 218 -44 1675 200 17 9 chr1 221134252 221134597 -21529756 + MLT1A1 LTR MaLR 18 365 0 540 130 0 61 chr1 221135790 221136054 -21528299 + (CCA)n Simple_repeat Simple_repeat 1 247 0 761 107 0 50 chr1 221136086 221136369 -21527984 + (CCA)n Simple_repeat Simple_repeat 1 268 0 1041 186 6 0 chr1 221136919 221137086 -21527267 - FAM SINE Alu -3 172 5 376 292 0 29 chr1 221138814 221139313 -21525040 + GA-rich Low_complexity Low_complexity 1 484 0 376 328 0 0 chr1 221139368 221139548 -21524805 + GA-rich Low_complexity Low_complexity 1 180 0 417 273 1 55 chr1 221139606 221140390 -21523963 + GA-rich Low_complexity Low_complexity 1 741 0 213 316 75 78 chr1 221140945 221141227 -21523126 + L2 LINE L2 2991 3271 -1 877 191 62 22 chr1 221141343 221141521 -21522832 - MER5A DNA MER1_type 0 189 5 531 300 89 86 chr1 221142532 221142601 -21521752 + L1ME4a LINE L1 5761 5828 -293 2143 124 0 0 chr1 221142601 221142908 -21521445 + AluSg SINE Alu 1 307 -3 531 300 89 86 chr1 221142908 221143198 -21521155 + L1ME4a LINE L1 5828 6121 0 1682 150 18 11 chr1 221143217 221143531 -21520822 + AluJo SINE Alu 1 316 0 22 35 0 0 chr1 221143537 221143566 -21520787 + AT_rich Low_complexity Low_complexity 1 29 0 677 138 4 200 chr1 221143988 221144228 -21520125 + MER58A DNA MER1_type 1 193 -31 649 207 122 77 chr1 221145238 221145460 -21518893 - MIR SINE MIR 0 262 31 455 233 39 33 chr1 221145935 221146077 -21518276 + MIR SINE MIR 15 160 -48 200 317 106 16 chr1 221146810 221146933 -21517420 + MIR SINE MIR 15 148 -114 2697 151 82 4 chr1 221147392 221147857 -21516496 + MLT1D LTR MaLR 1 501 -4 210 333 16 0 chr1 221147926 221147989 -21516364 - L2 LINE L2 -1 3312 3249 1707 141 54 11 chr1 221148102 221148379 -21515974 - AluJb SINE Alu -23 289 1 240 298 219 0 chr1 221148453 221148604 -21515749 - MIR SINE MIR 0 262 79 202 336 139 39 chr1 221149421 221149802 -21514551 + L2 LINE L2 2818 3236 -36 792 30 0 0 chr1 221151119 221151218 -21513135 + (TC)n Simple_repeat Simple_repeat 1 99 0 191 307 36 22 chr1 221151783 221151920 -21512433 + L2 LINE L2 2046 2184 -1130 547 272 14 0 chr1 221152060 221152207 -21512146 + L1ME1 LINE L1 6005 6153 -13 1192 179 14 31 chr1 221153742 221153965 -21510388 + MER20 DNA MER1_type 1 219 0 2165 92 0 26 chr1 221154120 221154426 -21509927 - AluSx SINE Alu -14 298 1 189 0 0 0 chr1 221156752 221156773 -21507580 + (T)n Simple_repeat Simple_repeat 1 21 0 1961 85 144 12 chr1 221156789 221157166 -21507187 + MER4C LTR ERV1 31 610 0 461 157 67 30 chr1 221158542 221158676 -21505677 + L1MC5 LINE L1 7657 7795 -166 417 231 18 59 chr1 221158842 221159011 -21505342 + MER41B LTR ERV1 258 419 -216 310 265 82 10 chr1 221159230 221159328 -21505025 + L1MC5 LINE L1 7821 7925 -36 2484 4 0 0 chr1 221159347 221159622 -21504731 + AluY SINE Alu 34 308 -3 565 239 116 90 chr1 221159627 221159699 -21504654 + Charlie7 DNA MER1_type 409 478 -2134 2364 58 7 3 chr1 221159699 221160007 -21504346 + AluY SINE Alu 1 309 -2 565 239 116 90 chr1 221160007 221160235 -21504118 + Charlie7 DNA MER1_type 478 717 -1895 855 193 240 23 chr1 221160422 221160722 -21503631 + L2 LINE L2 1629 1993 -1321 749 196 40 17 chr1 221160723 221160896 -21503457 - L1M4c LINE L1 -4183 2463 2287 2823 200 36 25 chr1 221160921 221161822 -21502531 - L1M4c LINE L1 -4543 2103 1192 2082 117 0 10 chr1 221162159 221162467 -21501886 + AluSx SINE Alu 1 305 -7 1908 125 3 30 chr1 221162644 221162947 -21501406 + AluSq SINE Alu 1 295 -18 1489 170 37 27 chr1 221162997 221163291 -21501062 - AluJb SINE Alu -15 297 1 2414 68 0 13 chr1 221163416 221163727 -21500626 + AluY SINE Alu 1 307 -4 823 230 151 34 chr1 221163809 221164192 -21500161 - L1MC4a LINE L1 -1694 6114 5687 2218 87 3 7 chr1 221164214 221164514 -21499839 + AluY SINE Alu 1 299 -12 809 180 16 48 chr1 221165071 221165260 -21499093 - L1ME2 LINE L1 -7 6157 5975 1678 131 24 44 chr1 221165352 221165649 -21498704 + AluSx SINE Alu 1 291 -21 22324 30 7 0 chr1 221165664 221169082 -21495271 - L1PA5 LINE L1 0 6154 2717 10982 43 4 2 chr1 221169082 221170433 -21493920 + L1PA5 LINE L1 1350 2702 -3444 2183 98 0 0 chr1 221170743 221171028 -21493325 + AluSg SINE Alu 1 285 -25 1620 164 48 7 chr1 221171551 221171844 -21492509 + AluSq SINE Alu 3 307 -6 2183 93 103 0 chr1 221172861 221173172 -21491181 - THE1B LTR MaLR -2 362 20 3232 86 155 6 chr1 221173172 221173670 -21490683 - THE1B-int LTR MaLR -1008 572 1 2703 92 14 0 chr1 221173672 221174029 -21490324 - THE1B LTR MaLR -2 362 1 21 71 0 0 chr1 221174741 221174783 -21489570 + AT_rich Low_complexity Low_complexity 1 42 0 674 222 173 21 chr1 221176968 221177211 -21487142 - MLT1J1 LTR MaLR -166 280 1 291 343 106 49 chr1 221177367 221177632 -21486721 + L3 LINE CR1 60 339 -1238 370 246 9 18 chr1 221177715 221177829 -21486524 + L1ME4a LINE L1 5681 5793 -328 33 73 0 0 chr1 221177853 221177921 -21486432 + AT_rich Low_complexity Low_complexity 1 68 0 2432 106 6 14 chr1 221177923 221178282 -21486071 + L1MA8 LINE L1 5594 5949 -342 823 114 8 0 chr1 221178287 221178419 -21485934 + AluSp/q SINE Alu 176 308 -5 740 206 14 0 chr1 221178424 221178570 -21485783 + L1MA8 LINE L1 5936 6083 -208 3385 122 29 11 chr1 221178571 221179174 -21485179 - MER4B LTR ERV1 0 779 3 882 140 140 0 chr1 221179175 221179354 -21484999 + L1MA8 LINE L1 6081 6284 -7 30 0 0 0 chr1 221179354 221179384 -21484969 + AT_rich Low_complexity Low_complexity 1 30 0 456 248 94 7 chr1 221179431 221179580 -21484773 + L1ME4a LINE L1 5960 6121 0 684 285 196 52 chr1 221179618 221179865 -21484488 + L3 LINE CR1 398 608 -969 971 180 35 5 chr1 221179865 221180065 -21484288 - MER3 DNA MER1_type -3 206 1 684 285 196 52 chr1 221180065 221180399 -21483954 + L3 LINE CR1 608 1063 -514 1342 143 8 64 chr1 221180841 221181107 -21483246 - AluJo SINE Alu -20 292 42 310 195 138 23 chr1 221181373 221181460 -21482893 + L3 LINE CR1 1323 1419 -158 737 258 88 5 chr1 221181488 221181705 -21482648 + MIR SINE MIR 28 262 0 408 242 0 0 chr1 221181785 221181876 -21482477 + MER103 DNA DNA 2 92 -74 784 256 57 16 chr1 221182034 221182280 -21482073 - MIR SINE MIR -4 258 3 1635 154 67 82 chr1 221183271 221183580 -21480773 - Charlie1b DNA MER1_type -2238 523 211 1560 97 0 9 chr1 221183580 221183797 -21480556 + AluSq SINE Alu 1 215 -98 2127 123 3 0 chr1 221183798 221184108 -21480245 + AluSx SINE Alu 1 311 -1 1635 154 67 82 chr1 221184108 221184271 -21480082 - Charlie1b DNA MER1_type -2549 212 56 2086 108 27 0 chr1 221184560 221184857 -21479496 - AluSx SINE Alu -7 305 1 729 173 0 0 chr1 221185189 221185299 -21479054 + AluSg/x SINE Alu 133 242 -68 4539 119 64 24 chr1 221185299 221186094 -21478259 + L1MB2 LINE L1 5343 6169 -2 1645 183 0 17 chr1 221186103 221186403 -21477950 + AluJb SINE Alu 1 295 -17 748 268 177 24 chr1 221186747 221187120 -21477233 + MLT1L LTR MaLR 115 544 -71 238 306 135 9 chr1 221187883 221187994 -21476359 - MIR3 SINE MIR -54 154 30 213 121 0 0 chr1 221188055 221188088 -21476265 + (CA)n Simple_repeat Simple_repeat 1 33 0 1957 122 0 30 chr1 221188102 221188264 -21476089 - AluSx SINE Alu -17 295 145 1875 124 32 0 chr1 221188264 221188546 -21475807 - AluSc SINE Alu -18 291 1 1957 122 0 30 chr1 221188546 221188687 -21475666 - AluSx SINE Alu -167 145 1 225 179 89 0 chr1 221188760 221188816 -21475537 - LTR16C LTR ERVL 0 491 431 612 269 110 48 chr1 221188977 221189524 -21474829 + HAL1 LINE L1 809 1389 -1118 2321 85 0 0 chr1 221190412 221190707 -21473646 - AluSq SINE Alu -17 296 2 262 250 166 79 chr1 221190878 221190969 -21473384 - MLT1K LTR MaLR -7 581 499 2039 110 3 3 chr1 221190969 221191281 -21473072 + AluSx SINE Alu 1 312 0 262 250 166 79 chr1 221191281 221191578 -21472775 - MLT1K LTR MaLR -89 499 45 1629 151 47 4 chr1 221191822 221192100 -21472253 + AluJo SINE Alu 1 290 -22 2373 171 103 43 chr1 221192114 221192697 -21471656 - MER92B LTR ERV1 -18 618 1 388 132 231 0 chr1 221192865 221192956 -21471397 - L1MC4 LINE L1 -2 8040 7929 2021 148 21 6 chr1 221193541 221193873 -21470480 + MER1B DNA MER1_type 1 337 0 623 163 41 27 chr1 221194198 221194345 -21470008 + L1ME LINE L1 5330 5478 -686 709 154 9 0 chr1 221194347 221194457 -21469896 - AluJo SINE Alu -178 134 24 2221 85 7 0 chr1 221194466 221194761 -21469592 - AluSq SINE Alu -10 303 7 621 259 90 19 chr1 221194853 221195065 -21469288 + MIR SINE MIR 15 241 -21 276 116 93 0 chr1 221195148 221195191 -21469162 - MLT1J LTR MaLR -324 187 141 237 345 28 21 chr1 221195731 221195876 -21468477 + L2 LINE L2 564 709 -2605 966 251 58 8 chr1 221195911 221196154 -21468199 + MLT1J LTR MaLR 72 326 -185 427 270 138 49 chr1 221196491 221196999 -21467354 + L1MC/D LINE L1 4807 5359 -787 2206 76 0 3 chr1 221197007 221197295 -21467058 + AluY SINE Alu 1 287 -24 236 250 111 0 chr1 221197552 221197660 -21466693 + L1MC/D LINE L1 5697 5816 -1992 2037 123 7 0 chr1 221197666 221197966 -21466387 + AluSq SINE Alu 1 302 -11 205 298 70 51 chr1 221198642 221198800 -21465553 + L2 LINE L2 1867 2027 -1287 1391 175 4 0 chr1 221199105 221199339 -21465014 - AluJb SINE Alu -75 237 3 773 196 124 72 chr1 221202638 221202690 -21461663 + MER21B LTR ERV1 430 478 -385 1825 166 7 0 chr1 221202690 221202997 -21461356 + AluJb SINE Alu 1 309 -3 773 196 124 72 chr1 221202997 221203194 -21461159 + MER21B LTR ERV1 478 692 -171 405 266 9 9 chr1 221205195 221205308 -21459045 + L2 LINE L2 3198 3310 -3 185 292 0 0 chr1 221206136 221206184 -21458169 + MIR SINE MIR 107 154 -108 2244 92 0 0 chr1 221206346 221206639 -21457714 + AluSg SINE Alu 1 293 -17 508 245 153 60 chr1 221208116 221208332 -21456021 - L2 LINE L2 -25 3288 3053 788 169 23 0 chr1 221208970 221209100 -21455253 - FLAM_A SINE Alu 0 133 1 1661 170 16 19 chr1 221209753 221210064 -21454289 + AluJb SINE Alu 1 310 -2 1836 146 7 23 chr1 221210984 221211292 -21453061 - AluJo SINE Alu -9 303 1 483 297 29 0 chr1 221211522 221211660 -21452693 - MIR3 SINE MIR -22 186 45 621 239 129 24 chr1 221211688 221211897 -21452456 - MIR SINE MIR -19 243 13 278 326 87 11 chr1 221213104 221213288 -21451065 + L3b LINE CR1 1218 1415 -168 378 303 50 0 chr1 221214320 221214419 -21449934 - L2 LINE L2 0 3272 3169 1584 190 3 10 chr1 221215548 221215853 -21448500 - AluJo SINE Alu -9 303 1 847 139 0 36 chr1 221216768 221216905 -21447448 + FLAM_C SINE Alu 1 132 -1 1868 117 0 0 chr1 221217611 221217877 -21446476 + AluSx SINE Alu 47 312 0 331 217 333 8 chr1 221218544 221218664 -21445689 - MIR SINE MIR -102 160 2 309 281 117 8 chr1 221219295 221219423 -21444930 + L1ME4a LINE L1 5952 6093 -28 325 281 145 66 chr1 221221055 221221283 -21443070 + MIR SINE MIR 13 258 -4 402 260 62 88 chr1 221221486 221221678 -21442675 - MIR3 SINE MIR -12 196 10 267 236 197 11 chr1 221222050 221222228 -21442125 + L1ME4a LINE L1 5803 6013 -108 2043 120 0 0 chr1 221222228 221222519 -21441834 + AluSq SINE Alu 1 291 -22 2343 71 3 0 chr1 221222753 221223048 -21441305 - AluSp SINE Alu -17 296 1 328 255 131 28 chr1 221223447 221223592 -21440761 + MIR SINE MIR 18 177 -85 567 203 49 31 chr1 221224481 221224644 -21439709 + MIR3 SINE MIR 22 187 -21 28 61 0 0 chr1 221225338 221225387 -21438966 + GC_rich Low_complexity Low_complexity 1 49 0 4655 155 32 33 chr1 221225886 221226463 -21437890 - L1MB5 LINE L1 0 6174 5598 1927 129 10 3 chr1 221226463 221226758 -21437595 - AluSx SINE Alu -15 297 1 4655 155 32 33 chr1 221226758 221227522 -21436831 - L1MB5 LINE L1 -576 5598 4833 209 333 27 27 chr1 221227669 221227780 -21436573 - L3 LINE CR1 -3 1574 1464 1788 144 0 23 chr1 221227782 221228087 -21436266 - AluSx SINE Alu -10 302 5 1008 169 22 11 chr1 221228224 221228402 -21435951 + MER21B LTR ERV1 1 180 -683 359 115 0 0 chr1 221228442 221228494 -21435859 + L1M4 LINE L1 1003 1054 -5488 2069 115 0 3 chr1 221228534 221228838 -21435515 - AluSg SINE Alu -7 303 1 981 184 18 103 chr1 221228840 221229201 -21435152 + L1M4 LINE L1 1042 1356 -5186 395 233 71 43 chr1 221229198 221229439 -21434914 + L1M4 LINE L1 3705 3998 -2646 * 532 100 0 0 chr1 221229452 221229522 -21434831 + Alu SINE Alu 2 71 -238 1815 103 0 4 chr1 221229522 221229784 -21434569 + AluY SINE Alu 42 302 -9 628 147 80 40 chr1 221229786 221229936 -21434417 + L1M4 LINE L1 3980 4135 -2509 516 209 85 0 chr1 221229940 221230069 -21434284 - MER21B LTR ERV1 -54 809 670 443 179 193 48 chr1 221230058 221230203 -21434150 - MER21B LTR ERV1 -526 337 172 * 2188 217 47 111 chr1 221230204 221230978 -21433375 - L1M4 LINE L1 -5379 1163 452 1851 119 0 75 chr1 221230978 221231297 -21433056 + AluSq SINE Alu 1 295 -18 2188 217 47 111 chr1 221231297 221231413 -21432940 - L1M4 LINE L1 -6090 452 330 780 273 90 7 chr1 221231539 221231844 -21432509 + MLT1J LTR MaLR 131 501 -10 508 317 96 10 chr1 221232452 221232691 -21431662 + MIR SINE MIR 3 258 -4 790 169 0 15 chr1 221232831 221232961 -21431392 + FLAM_A SINE Alu 1 128 -5 6458 175 58 35 chr1 221233420 221233530 -21430823 - Charlie1a DNA MER1_type -1306 1455 1349 1486 171 173 42 chr1 221233530 221233934 -21430419 + MSTB2 LTR MaLR 1 457 0 6458 175 58 35 chr1 221233934 221234083 -21430270 - Charlie1a DNA MER1_type -1412 1349 1205 1901 201 44 34 chr1 221234083 221234581 -21429772 + MLT1D LTR MaLR 3 505 0 1931 140 0 7 chr1 221234582 221234882 -21429471 + AluSx SINE Alu 1 298 -14 6458 175 58 35 chr1 221234882 221235759 -21428594 - Charlie1a DNA MER1_type -1556 1205 273 2447 18 0 0 chr1 221235759 221236068 -21428285 + AluYb8 SINE Alu 15 323 0 6458 175 58 35 chr1 221236068 221236347 -21428006 - Charlie1a DNA MER1_type -2488 273 2 2281 91 3 3 chr1 221236867 221237175 -21427178 + AluSg SINE Alu 1 308 -2 1737 113 11 4 chr1 221237271 221237536 -21426817 + AluSg SINE Alu 42 308 -2 284 230 135 0 chr1 221237557 221237631 -21426722 - L1ME4a LINE L1 -69 6052 5969 304 264 77 22 chr1 221237638 221237729 -21426624 - L1ME4a LINE L1 -209 5912 5817 2084 108 0 3 chr1 221237744 221238039 -21426314 + AluY SINE Alu 1 294 -17 2541 212 122 33 chr1 221238219 221238968 -21425385 - MER21B LTR ERV1 -48 815 1 376 335 86 15 chr1 221238971 221239240 -21425113 - L1ME4a LINE L1 -523 5598 5311 782 135 8 121 chr1 221239386 221239623 -21424730 - MER4A LTR ERV1 -135 529 261 273 125 375 14 chr1 221239623 221239695 -21424658 - MER4A LTR ERV1 -566 98 1 17569 88 53 32 chr1 221239696 221240939 -21423414 - MER4A-int LTR ERV1 0 6598 5382 8497 58 0 0 chr1 221240939 221242776 -21421577 - L1PA6 LINE L1 -3 6151 4317 17569 88 53 32 chr1 221242776 221243710 -21420643 - MER4A-int LTR ERV1 -1216 5382 4469 2247 86 0 13 chr1 221243710 221244014 -21420339 + AluSx SINE Alu 8 307 -5 17569 88 53 32 chr1 221244014 221244536 -21419817 - MER4A-int LTR ERV1 -2129 4469 3959 4159 71 36 0 chr1 221244536 221245070 -21419283 - MER41A LTR ERV1 -1 553 1 17569 88 53 32 chr1 221245070 221245378 -21418975 - MER4A-int LTR ERV1 -2639 3959 3659 2193 56 0 18 chr1 221245378 221245692 -21418661 + AluY SINE Alu 1 309 0 17569 88 53 32 chr1 221245692 221245834 -21418519 - MER4A-int LTR ERV1 -2939 3659 1875 1214 148 131 9 chr1 221245834 221246063 -21418290 + LTR8 LTR ERV1 1 257 -434 4210 71 74 27 chr1 221246063 221246756 -21417597 - MER4-int LTR ERV1 -4103 2495 1771 1469 67 65 112 chr1 221246754 221247004 -21417349 - MER4-int LTR ERV1 -4266 1268 1008 * 2387 68 7 0 chr1 221247004 221247312 -21417041 - AluSp SINE Alu -3 310 1 1469 67 65 112 chr1 221247312 221247413 -21416940 - MER4-int LTR ERV1 -4526 1008 504 238 152 0 43 chr1 221247434 221247480 -21416873 - LTR49 LTR ERV1 -279 316 273 3224 82 127 59 chr1 221247597 221248171 -21416182 - MER4A-int LTR ERV1 -5980 618 6 1895 112 5 75 chr1 221248197 221248568 -21415785 - MER4A LTR ERV1 0 664 261 286 156 0 0 chr1 221248568 221248613 -21415740 - MER4A LTR ERV1 -566 98 54 4907 205 34 93 chr1 221248639 221249550 -21414803 - MLT1D-int LTR MaLR -27 1344 540 2040 111 0 29 chr1 221249550 221249865 -21414488 - AluY SINE Alu -5 306 1 4907 205 34 93 chr1 221249865 221250328 -21414025 - MLT1D-int LTR MaLR -831 540 51 595 133 48 29 chr1 221250328 221250433 -21413920 - FLAM_A SINE Alu -15 127 21 250 26 26 26 chr1 221250434 221250472 -21413881 - MLT1D-int LTR MaLR -1320 51 14 * 401 123 0 0 chr1 221250464 221250521 -21413832 - MLT1D-int LTR MaLR -1312 59 3 1002 192 62 10 chr1 221250523 221250716 -21413637 - MLT1D LTR MaLR 0 505 303 710 98 0 8 chr1 221250721 221250844 -21413509 + (TTCC)n Simple_repeat Simple_repeat 4 125 0 1342 128 10 0 chr1 221250847 221251051 -21413302 - AluSq SINE Alu -16 297 92 1189 118 12 0 chr1 221451090 221451260 -21213093 - AluSq SINE Alu -141 172 1 1912 202 48 65 chr1 221451662 221452181 -21212172 - LTR8 LTR ERV1 0 691 182 773 219 0 44 chr1 221452180 221452385 -21211968 - LTR8 LTR ERV1 -438 253 58 * 216 248 223 33 chr1 221454602 221454723 -21209630 - MIR SINE MIR 0 262 119 201 196 0 0 chr1 221455173 221455219 -21209134 + (TG)n Simple_repeat Simple_repeat 2 47 0 1630 213 21 6 chr1 221456410 221456748 -21207605 - MLT1A1 LTR MaLR -22 343 1 272 260 87 10 chr1 221456826 221456930 -21207423 - MLT1G LTR MaLR -469 121 10 1388 144 72 16 chr1 221459492 221459742 -21204611 - AluSx SINE Alu -16 296 33 1067 246 102 42 chr1 221459744 221460243 -21204110 - MER74B LTR ERVL -19 603 75 1666 174 36 4 chr1 221460774 221461070 -21203283 + AluJo SINE Alu 1 305 0 252 214 19 19 chr1 221461221 221461324 -21203029 + CT-rich Low_complexity Low_complexity 4 106 0 3089 156 29 4 chr1 221462379 221462904 -21201449 - L1MB3 LINE L1 0 6183 5646 2189 104 119 26 chr1 221462905 221463290 -21201063 + MSTA LTR MaLR 2 422 -6 1963 119 0 31 chr1 221463865 221464151 -21200202 + AluSg1 SINE Alu 1 277 -32 294 29 0 0 chr1 221464151 221464186 -21200167 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 233 324 85 40 chr1 221464273 221464449 -21199904 - MIR3 SINE MIR -2 206 23 201 195 0 0 chr1 221467112 221467153 -21197200 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 702 82 0 0 chr1 221468176 221468273 -21196080 + L1P LINE L1 3 99 -6047 * 6629 52 0 0 chr1 221468270 221469134 -21195219 + L1P LINE L1 1094 1957 -4189 1761 151 51 13 chr1 221469853 221470165 -21194188 - MER1B DNA MER1_type -15 324 1 196 315 63 24 chr1 221470168 221470295 -21194058 + MIR3 SINE MIR 14 145 -63 185 204 108 86 chr1 221471731 221471824 -21192529 - MIR3 SINE MIR -29 179 85 783 151 0 0 chr1 221472011 221472137 -21192216 - L1MA6 LINE L1 -164 6136 6011 443 299 22 7 chr1 221472462 221472599 -21191754 + L2 LINE L2 3163 3301 -12 288 193 36 60 chr1 221473154 221473237 -21191116 + MER74A LTR ERVL 2 82 -476 922 261 71 54 chr1 221473408 221473776 -21190577 + MER74B LTR ERVL 156 529 -93 36 26 0 0 chr1 221473908 221473946 -21190407 + AT_rich Low_complexity Low_complexity 1 38 0 1621 233 10 0 chr1 221474896 221475303 -21189050 - L1 LINE L1 -788 5358 4948 210 264 168 40 chr1 221476201 221476326 -21188027 + MIR3 SINE MIR 4 144 -64 2182 101 3 0 chr1 221479168 221479455 -21184898 + AluSp SINE Alu 17 304 -9 383 299 28 57 chr1 221480089 221480266 -21184087 + L1MC/D LINE L1 5319 5490 -2318 230 353 18 24 chr1 221480279 221480446 -21183907 - MLT1J LTR MaLR -19 492 327 7286 113 11 30 chr1 221480744 221481926 -21182427 - HSMAR1 DNA Mariner 0 1287 128 2294 103 63 20 chr1 221482784 221483133 -21181220 - THE1B LTR MaLR 0 364 1 263 323 129 8 chr1 221484584 221484708 -21179645 + MER5B DNA MER1_type 7 145 -33 255 245 28 85 chr1 221484942 221485048 -21179305 - MIR SINE MIR -70 192 93 297 277 58 51 chr1 221485052 221485189 -21179164 - L2 LINE L2 0 3313 3176 734 269 76 10 chr1 221486300 221486601 -21177752 - MER67D LTR ERV1 0 514 194 335 339 100 21 chr1 221487411 221487700 -21176653 - L2 LINE L2 -19 3294 2983 1872 156 3 10 chr1 221488509 221488811 -21175542 + AluSg SINE Alu 10 309 -1 794 239 6 0 chr1 221489715 221489891 -21174462 - MLT1A1 LTR MaLR -2 363 187 1938 162 14 0 chr1 221489894 221490240 -21174113 - L1PA16 LINE L1 -321 5845 5495 1302 241 20 22 chr1 221491629 221492035 -21172318 - L1 LINE L1 -788 5358 4954 2004 125 14 11 chr1 221492632 221492912 -21171441 + AluSx SINE Alu 22 302 -10 2376 73 3 58 chr1 221493018 221493347 -21171006 - AluY SINE Alu 0 311 1 1802 181 7 0 chr1 221493658 221493951 -21170402 - AluJo SINE Alu -17 295 1 2302 108 0 3 chr1 221494025 221494322 -21170031 - AluSx SINE Alu -16 296 1 2140 131 0 16 chr1 221494410 221494716 -21169637 - AluSx SINE Alu -11 301 1 678 129 0 0 chr1 221494748 221494841 -21169512 + AluS SINE Alu 2 94 -218 516 215 25 13 chr1 221494942 221495100 -21169253 - L1PA16 LINE L1 -740 5426 5267 261 250 50 79 chr1 221497090 221497230 -21167123 - MER54B LTR ERVL -317 476 341 1099 263 17 36 chr1 221497426 221497840 -21166513 - L1 LINE L1 -786 5360 4955 234 291 0 0 chr1 221497841 221497927 -21166426 + L1MA9 LINE L1 6225 6310 -2 259 329 24 12 chr1 221498799 221498884 -21165469 + MIR3 SINE MIR 82 167 -41 395 141 42 0 chr1 221498897 221498968 -21165385 + MER41A LTR ERV1 395 468 -86 1921 156 3 0 chr1 221500140 221500429 -21163924 - AluSx SINE Alu -22 290 1 2119 136 0 7 chr1 221500669 221500977 -21163376 + AluJo SINE Alu 1 306 -6 324 263 191 28 chr1 221501275 221501633 -21162720 + L2 LINE L2 2554 2983 -289 2167 153 8 27 chr1 221501756 221501908 -21162445 + MLT1A1 LTR MaLR 1 154 -211 1616 164 64 4 chr1 221501908 221502188 -21162165 + AluJb SINE Alu 1 297 -15 2167 153 8 27 chr1 221502188 221502407 -21161946 + MLT1A1 LTR MaLR 154 365 0 2214 107 0 0 chr1 221502464 221502764 -21161589 - AluSq SINE Alu -13 300 1 786 282 24 5 chr1 221502848 221503061 -21161292 - Charlie8 DNA MER1_type -2155 262 46 1398 181 59 4 chr1 221503208 221503462 -21160891 - AluJo SINE Alu -39 273 6 554 247 142 26 chr1 221503472 221503662 -21160691 - MIR SINE MIR -37 225 14 203 318 61 91 chr1 221503663 221503742 -21160611 + L2 LINE L2 3140 3220 -52 2050 115 7 0 chr1 221503742 221504028 -21160325 + AluSg SINE Alu 1 288 -22 180 0 0 0 chr1 221504038 221504058 -21160295 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 203 318 61 91 chr1 221504058 221504099 -21160254 + L2 LINE L2 3229 3267 -5 265 254 30 15 chr1 221504133 221504200 -21160153 - L2 LINE L2 0 3272 3205 305 75 0 0 chr1 221504551 221504591 -21159762 + Alu SINE Alu 1 40 -262 22 56 0 0 chr1 221504691 221504727 -21159626 + AT_rich Low_complexity Low_complexity 1 36 0 1806 112 47 14 chr1 221504727 221505003 -21159350 - AluSx SINE Alu -27 285 1 228 277 59 20 chr1 221505216 221505317 -21159036 - MLT1K LTR MaLR -357 231 127 2134 112 0 0 chr1 221505374 221505669 -21158684 + AluSg SINE Alu 1 295 -15 671 99 0 0 chr1 221505669 221505770 -21158583 - L1MA8 LINE L1 -12 6279 6179 397 134 60 8 chr1 221505772 221505852 -21158501 - L1MA9 LINE L1 -230 6070 5994 1424 187 16 0 chr1 221505916 221506162 -21158191 + MLT1F LTR MaLR 1 250 -292 1184 158 64 17 chr1 221506162 221506396 -21157957 - MER96B DNA MER1_type? 0 417 173 2225 90 0 3 chr1 221506532 221506831 -21157522 + AluSx SINE Alu 1 298 -14 790 284 50 0 chr1 221507009 221507227 -21157126 - MIR SINE MIR -16 246 18 442 239 15 54 chr1 221507240 221507370 -21156983 + MIR SINE MIR 32 156 -106 646 100 0 2 chr1 221507620 221507865 -21156488 + AluSg SINE Alu 1 301 -9 796 265 150 18 chr1 221509410 221509963 -21154390 + L2 LINE L2 2485 3115 -198 489 174 0 51 chr1 221511315 221511413 -21152940 - AluJo SINE Alu -130 182 90 1333 75 6 0 chr1 221511428 221511601 -21152752 + AluSg SINE Alu 121 294 -18 1988 122 17 0 chr1 221512501 221512797 -21151556 - AluSx SINE Alu -11 301 1 2308 66 26 3 chr1 221514263 221514567 -21149786 + AluSq SINE Alu 1 311 -2 229 351 70 29 chr1 221515811 221515982 -21148371 - L3 LINE CR1 -239 1338 1161 * 331 353 139 0 chr1 221515966 221516153 -21148200 + MIR SINE MIR 49 261 -1 515 300 53 69 chr1 221516192 221516439 -21147914 - L3 LINE CR1 -433 1144 902 2165 96 3 3 chr1 221516455 221516747 -21147606 + AluSp SINE Alu 1 292 -21 2089 122 0 0 chr1 221516775 221517070 -21147283 + AluSg SINE Alu 6 300 -10 239 219 31 16 chr1 221517250 221517314 -21147039 - MIR SINE MIR -35 227 163 346 207 43 95 chr1 221517456 221517572 -21146781 + L1ME3A LINE L1 6060 6169 -1 2265 103 0 0 chr1 221517598 221517898 -21146455 + AluSx SINE Alu 3 302 -10 286 306 60 37 chr1 221518451 221518585 -21145768 + MIR SINE MIR 126 262 0 1616 163 10 3 chr1 221518828 221519123 -21145230 + AluJo SINE Alu 1 297 -15 200 241 21 135 chr1 221519133 221519214 -21145139 + L2 LINE L2 2722 2782 -532 1926 131 10 0 chr1 221519214 221519505 -21144848 + AluSx SINE Alu 1 294 -18 200 241 21 135 chr1 221519505 221519564 -21144789 + L2 LINE L2 2782 2846 -468 493 179 0 27 chr1 221520164 221520276 -21144077 + AluSp/q SINE Alu 198 306 -7 610 269 0 0 chr1 221520529 221520659 -21143694 + FLAM_A SINE Alu 1 130 -3 1247 164 31 68 chr1 221520767 221521059 -21143294 + AluJb SINE Alu 1 281 -31 207 0 0 0 chr1 221521063 221521086 -21143267 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1309 197 17 27 chr1 221521092 221521386 -21142967 + AluJb SINE Alu 6 296 -16 355 274 94 26 chr1 221521388 221521505 -21142848 + L1ME4a LINE L1 5990 6114 -7 1999 131 3 10 chr1 221521850 221522164 -21142189 - AluSx SINE Alu 0 312 1 300 304 0 0 chr1 221522480 221522549 -21141804 + HAL1 LINE L1 2 70 -2437 2222 98 0 3 chr1 221522584 221522891 -21141462 + AluSx SINE Alu 1 306 -6 1944 107 37 7 chr1 221522924 221523223 -21141130 + AluSx SINE Alu 5 312 0 730 249 91 42 chr1 221523240 221523505 -21140848 + HAL1 LINE L1 1536 1813 -694 320 290 183 15 chr1 221523586 221523717 -21140636 + HAL1 LINE L1 2060 2212 -295 21 0 0 0 chr1 221523745 221523766 -21140587 + AT_rich Low_complexity Low_complexity 1 21 0 482 276 0 53 chr1 221523773 221523925 -21140428 + HAL1 LINE L1 2333 2476 -31 728 178 274 5 chr1 221524012 221524231 -21140122 + MLT1D LTR MaLR 2 279 -226 2220 85 3 16 chr1 221524247 221524552 -21139801 + AluSg SINE Alu 1 301 -9 423 240 88 16 chr1 221524565 221524690 -21139663 + MLT1D LTR MaLR 349 482 -23 298 173 0 0 chr1 221524702 221524754 -21139599 + MER90 LTR ERV1 520 571 -4 236 154 0 19 chr1 221525267 221525319 -21139034 - AluY SINE Alu -1 307 257 1660 107 12 8 chr1 221525345 221525598 -21138755 - AluY SINE Alu -57 254 1 341 111 0 48 chr1 221525826 221525850 -21138503 + MLT1D LTR MaLR 454 478 -27 1784 144 7 17 chr1 221525850 221526149 -21138204 - AluJb SINE Alu -16 296 1 341 111 0 48 chr1 221526149 221526200 -21138153 + MLT1D LTR MaLR 478 503 -2 2454 49 0 16 chr1 221526391 221526698 -21137655 + AluY SINE Alu 1 302 -9 1191 93 6 0 chr1 221526942 221527103 -21137250 + AluSg/x SINE Alu 135 296 -14 442 90 0 0 chr1 221527123 221527190 -21137163 - MER41A LTR ERV1 -88 466 400 2410 56 0 3 chr1 221527319 221527622 -21136731 + AluY SINE Alu 1 302 -9 462 175 67 0 chr1 221527728 221527848 -21136505 + L1MA10 LINE L1 6195 6322 -12 527 193 160 0 chr1 221527873 221528003 -21136350 + MER5A DNA MER1_type 4 157 -32 1738 163 7 0 chr1 221528060 221528355 -21135998 - AluJo SINE Alu -10 302 6 1082 155 11 0 chr1 221528512 221528693 -21135660 - AluSg/x SINE Alu -5 305 123 21 57 0 0 chr1 221528756 221528791 -21135562 + AT_rich Low_complexity Low_complexity 1 35 0 231 115 135 0 chr1 221528792 221528844 -21135509 - L1ME4a LINE L1 -1 6120 6062 2154 218 120 2 chr1 221529088 221529597 -21134756 + MER69 DNA AcHobo 2 570 -1956 1076 272 65 32 chr1 221530032 221530343 -21134010 + MER69 DNA AcHobo 556 882 -1644 2401 54 0 3 chr1 221530343 221530641 -21133712 + AluY SINE Alu 1 297 -14 1076 272 65 32 chr1 221530641 221530700 -21133653 + MER69 DNA AcHobo 882 938 -1588 1001 163 60 50 chr1 221530704 221530903 -21133450 + MER69 DNA AcHobo 2010 2214 -312 2079 103 10 7 chr1 221530903 221531213 -21133140 + AluSx SINE Alu 2 312 0 1001 163 60 50 chr1 221531213 221531296 -21133057 + MER69 DNA AcHobo 2214 2295 -231 698 217 111 9 chr1 221531390 221531607 -21132746 + MER69 DNA AcHobo 2286 2524 -2 259 264 85 57 chr1 221531610 221531716 -21132637 + MIR SINE MIR 84 192 -70 220 191 24 0 chr1 221532276 221532318 -21132035 + (CCG)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr1 221532811 221532834 -21131519 + AT_rich Low_complexity Low_complexity 1 23 0 868 83 8 0 chr1 221533934 221534055 -21130298 + AluSg/x SINE Alu 176 297 -15 683 155 0 0 chr1 221534055 221534158 -21130195 + AluSg/x SINE Alu 196 298 -14 2233 79 3 7 chr1 221534644 221534947 -21129406 - AluY SINE Alu -9 302 1 2047 99 34 0 chr1 221534950 221535242 -21129111 - AluSp SINE Alu -10 303 2 1957 112 0 24 chr1 221535373 221535667 -21128686 + AluY SINE Alu 1 287 -24 859 153 0 0 chr1 221535767 221535898 -21128455 - AluSq/x SINE Alu -182 131 1 2119 92 3 0 chr1 221535965 221536249 -21128104 + AluSx SINE Alu 1 285 -27 219 88 0 0 chr1 221536249 221536283 -21128070 + (TA)n Simple_repeat Simple_repeat 2 35 0 1535 105 126 25 chr1 221537536 221537813 -21126540 + AluJo SINE Alu 1 305 -7 1995 132 3 3 chr1 221538996 221539300 -21125053 - AluSx SINE Alu -3 309 6 1480 145 3 106 chr1 221539376 221539707 -21124646 + AluJb SINE Alu 1 297 -15 2058 114 3 7 chr1 221540020 221540319 -21124034 + AluSx SINE Alu 2 299 -13 1934 122 3 39 chr1 221540720 221541032 -21123321 - AluSx SINE Alu -9 303 3 1903 158 0 0 chr1 221541065 221541368 -21122985 + AluJo SINE Alu 1 303 -9 2054 124 7 0 chr1 221541371 221541670 -21122683 + AluSx SINE Alu 2 302 -10 25 51 0 0 chr1 221541750 221541789 -21122564 + AT_rich Low_complexity Low_complexity 1 39 0 235 313 126 37 chr1 221542065 221542279 -21122074 - L2 LINE L2 -934 2380 2148 1293 226 3 7 chr1 221542582 221542879 -21121474 + AluJo SINE Alu 1 296 -16 2222 91 0 13 chr1 221543058 221543365 -21120988 + AluY SINE Alu 1 303 -8 883 278 78 38 chr1 221543999 221544319 -21120034 - L2 LINE L2 -3 3310 2978 2160 112 3 10 chr1 221544389 221544703 -21119650 - AluSx SINE Alu 0 312 1 743 224 171 26 chr1 221544724 221544952 -21119401 + MIR SINE MIR 2 262 0 453 210 20 0 chr1 221545059 221545159 -21119194 + U13 snRNA snRNA 1 102 -2 596 266 145 38 chr1 221545167 221545532 -21118821 - L2 LINE L2 -12 3301 2898 1570 139 109 0 chr1 221545714 221545981 -21118372 + AluSx SINE Alu 1 296 -16 1506 156 0 78 chr1 221545985 221546305 -21118048 + AluJo SINE Alu 1 295 -17 851 304 134 38 chr1 221546313 221546843 -21117510 - L2 LINE L2 -191 3081 2438 2205 90 3 0 chr1 221546843 221547144 -21117209 + AluSx SINE Alu 5 306 -6 851 304 134 38 chr1 221547144 221547361 -21116992 - L2 LINE L2 -834 2438 2243 411 282 114 0 chr1 221547361 221547492 -21116861 + MIR SINE MIR 117 262 0 2167 94 7 10 chr1 221548147 221548456 -21115897 + AluSp SINE Alu 1 308 -5 857 181 64 44 chr1 221548513 221548717 -21115636 - MER3 DNA MER1_type -1 208 1 517 259 104 52 chr1 221551249 221551461 -21112892 + MIR SINE MIR 7 229 -33 186 313 75 12 chr1 221552120 221552200 -21112153 + MIR SINE MIR 49 133 -75 199 296 19 0 chr1 221552257 221552311 -21112042 - MIR SINE MIR -159 103 49 1429 158 19 133 chr1 221552359 221552425 -21111928 - MLT1A1 LTR MaLR 0 365 293 2337 106 0 0 chr1 221552425 221552727 -21111626 - AluSq SINE Alu -11 302 1 1429 158 19 133 chr1 221552727 221553072 -21111281 - MLT1A1 LTR MaLR -72 293 1 372 36 0 18 chr1 221553225 221553280 -21111073 + L1MA1 LINE L1 6245 6298 -4 2270 108 3 25 chr1 221553441 221553755 -21110598 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr1 221553903 221553924 -21110429 + AT_rich Low_complexity Low_complexity 1 21 0 324 315 25 10 chr1 221554299 221554434 -21109919 + MIR SINE MIR 30 164 -64 2921 167 32 31 chr1 221554586 221555457 -21108896 + L1MB3 LINE L1 4971 5838 -345 1914 88 0 117 chr1 221555459 221555506 -21108847 + HSMAR2 DNA Mariner 2 53 -1249 2280 121 0 0 chr1 221555506 221555812 -21108541 + AluSx SINE Alu 1 306 -6 1914 88 0 117 chr1 221555812 221556063 -21108290 + HSMAR2 DNA Mariner 53 258 -1044 3063 98 19 7 chr1 221556063 221556490 -21107863 + MER57B LTR ERV1 3 434 0 1914 88 0 117 chr1 221556490 221556533 -21107820 + HSMAR2 DNA Mariner 258 304 -998 616 98 0 0 chr1 221558095 221558177 -21106176 + AluSp/q SINE Alu 218 299 -14 2393 63 0 17 chr1 221558216 221558545 -21105808 + AluY SINE Alu 1 324 0 1458 78 0 0 chr1 221558547 221558727 -21105626 + AluSg/x SINE Alu 131 310 0 24 0 0 0 chr1 221559032 221559056 -21105297 + AT_rich Low_complexity Low_complexity 1 24 0 532 195 80 0 chr1 221560221 221560334 -21104019 + MER3 DNA MER1_type 88 209 0 2453 60 0 0 chr1 221560364 221560669 -21103684 - AluY SINE Alu 0 305 1 2067 133 13 7 chr1 221560688 221560990 -21103363 - AluJb SINE Alu -8 304 1 2202 113 0 0 chr1 221561110 221561420 -21102933 - AluSx SINE Alu 0 310 1 1016 163 6 18 chr1 221561486 221561652 -21102701 + FRAM SINE Alu 1 159 -17 2081 125 10 16 chr1 221561980 221562292 -21102061 - AluSq SINE Alu -3 310 1 2896 243 56 58 chr1 221562954 221563072 -21101281 + L1MC5 LINE L1 6675 6792 -1169 2252 127 0 0 chr1 221563072 221563380 -21100973 + AluSx SINE Alu 1 308 -4 2896 243 56 58 chr1 221563380 221564502 -21099851 + L1MC5 LINE L1 6792 7913 -48 2425 48 3 24 chr1 221565717 221566043 -21098310 + AluY SINE Alu 1 320 0 213 115 39 19 chr1 221566540 221566592 -21097761 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 797 142 16 0 chr1 221566596 221566723 -21097630 + FLAM_C SINE Alu 1 129 -4 196 367 77 34 chr1 221567606 221567813 -21096540 + L2 LINE L2 3057 3272 0 345 127 0 18 chr1 221567935 221568017 -21096336 - AluSq SINE Alu 0 301 234 1476 97 0 0 chr1 221568017 221568203 -21096150 - AluSq SINE Alu -127 186 1 271 219 0 0 chr1 221568219 221568289 -21096064 + MIR SINE MIR 73 143 -65 1691 136 52 39 chr1 221568323 221568609 -21095744 - AluJo SINE Alu -21 291 2 224 288 30 0 chr1 221569698 221569764 -21094589 + MIR SINE MIR 86 153 -55 666 211 12 25 chr1 221569764 221569925 -21094428 + MER5B DNA MER1_type 3 161 -17 310 317 36 12 chr1 221571279 221571446 -21092907 - MIR SINE MIR -32 230 60 1706 132 113 0 chr1 221571773 221572039 -21092314 - AluSg SINE Alu -14 296 1 307 228 50 20 chr1 221572158 221572259 -21092094 - L2 LINE L2 -7 3306 3203 766 187 14 7 chr1 221572463 221572602 -21091751 + FRAM SINE Alu 7 146 -30 2182 109 3 3 chr1 221572602 221572896 -21091457 - AluSx SINE Alu -18 294 1 960 157 24 6 chr1 221572900 221573098 -21091255 - L1MB8 LINE L1 -256 5922 5740 226 167 24 119 chr1 221573106 221573190 -21091163 - MIR SINE MIR -102 106 31 333 260 0 0 chr1 221573449 221573522 -21090831 + L1ME4a LINE L1 5754 5826 -295 1949 145 3 10 chr1 221573524 221573821 -21090532 + AluJb SINE Alu 1 295 -17 2109 149 3 0 chr1 221573925 221574233 -21090120 - AluSx SINE Alu -3 309 1 1360 112 31 49 chr1 221574242 221574405 -21089948 - AluSg/x SINE Alu -10 300 136 2248 99 10 7 chr1 221574405 221574709 -21089644 - AluSg SINE Alu -5 305 1 2254 121 0 0 chr1 221574709 221575007 -21089346 - AluSx SINE Alu -14 298 1 1360 112 31 49 chr1 221575007 221575065 -21089288 - AluSg/x SINE Alu -172 138 82 922 140 88 47 chr1 221575068 221575239 -21089114 + AluJb SINE Alu 104 281 -31 243 61 0 0 chr1 221575243 221575276 -21089077 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 22 80 0 0 chr1 221575404 221575454 -21088899 + AT_rich Low_complexity Low_complexity 1 50 0 1775 167 7 33 chr1 221575457 221575756 -21088597 - AluJb SINE Alu -21 291 1 74 90 0 0 chr1 221575765 221575965 -21088388 + AT_rich Low_complexity Low_complexity 1 200 0 698 229 170 5 chr1 221576460 221576678 -21087675 + MER20B DNA MER1_type 83 336 -447 933 214 125 7 chr1 221576748 221577028 -21087325 + MER20B DNA MER1_type 468 780 -3 214 180 0 40 chr1 221577079 221577129 -21087224 + L2 LINE L2 3264 3311 -2 2210 129 0 3 chr1 221577206 221577509 -21086844 - AluJb SINE Alu -10 302 1 232 346 37 0 chr1 221577721 221577802 -21086551 - L2 LINE L2 0 3272 3189 1932 102 0 111 chr1 221577870 221578203 -21086150 + AluSx SINE Alu 1 296 -16 1918 169 0 13 chr1 221578423 221578736 -21085617 + AluJb SINE Alu 1 309 -3 568 240 104 0 chr1 221578737 221578891 -21085462 - L1MC4a LINE L1 -1897 5911 5742 235 225 153 9 chr1 221579088 221579199 -21085154 + L1ME4a LINE L1 5995 6121 0 677 250 85 18 chr1 221579411 221579635 -21084718 - MIR SINE MIR -3 259 21 1498 184 0 0 chr1 221579803 221580048 -21084305 + AluJo SINE Alu 36 280 -32 599 208 11 11 chr1 221580053 221580231 -21084122 + GA-rich Low_complexity Low_complexity 3 180 0 201 195 0 0 chr1 221580226 221580267 -21084086 + A-rich Low_complexity Low_complexity 1 41 0 * 487 250 17 0 chr1 221580510 221580626 -21083727 + L1ME LINE L1 5650 5767 -399 2191 64 0 47 chr1 221580659 221581011 -21083342 - AluY SINE Alu 0 338 1 730 178 16 0 chr1 221581031 221581160 -21083193 - FLAM_C SINE Alu 0 133 3 184 293 47 38 chr1 221581206 221581232 -21083121 + MIR SINE MIR 122 146 -116 2093 130 0 10 chr1 221581232 221581533 -21082820 + AluSx SINE Alu 1 298 -14 184 293 47 38 chr1 221581533 221581612 -21082741 + MIR SINE MIR 146 228 -34 201 193 175 0 chr1 221581651 221581708 -21082645 - L3 LINE CR1 -175 1402 1336 2138 130 0 10 chr1 221581759 221582059 -21082294 - AluSx SINE Alu -15 297 1 255 316 31 20 chr1 221582061 221582159 -21082194 - L2 LINE L2 -9 3304 3206 2229 114 3 0 chr1 221582415 221582712 -21081641 - AluSx SINE Alu -14 298 1 801 186 75 0 chr1 221582732 221582920 -21081433 - MER69 DNA AcHobo -211 2315 2114 2364 73 7 10 chr1 221583338 221583641 -21080712 + AluY SINE Alu 1 302 -9 478 183 67 0 chr1 221583748 221583868 -21080485 + L1MA10 LINE L1 6195 6322 -12 2420 77 6 6 chr1 221584037 221584348 -21080005 - AluY SINE Alu 0 311 1 3643 176 155 161 chr1 221584350 221584471 -21079882 - L1MCa LINE L1 -3888 2719 2599 1503 150 120 11 chr1 221584471 221584738 -21079615 - AluSg1 SINE Alu -13 296 1 1622 135 51 15 chr1 221584742 221585055 -21079298 - AluJb SINE Alu 0 323 1 3643 176 155 161 chr1 221585055 221585707 -21078646 - L1MCa LINE L1 -4011 2596 1942 2246 108 14 0 chr1 221585707 221586002 -21078351 + AluSx SINE Alu 1 299 -13 3643 176 155 161 chr1 221586002 221586100 -21078253 - L1MCa LINE L1 -4665 1942 1845 2431 66 3 0 chr1 221586100 221586387 -21077966 + AluY SINE Alu 1 288 -23 3643 176 155 161 chr1 221586387 221586403 -21077950 - L1MCa LINE L1 -4762 1845 1830 617 231 8 0 chr1 221586403 221586537 -21077816 - FLAM_C SINE Alu -6 137 3 3643 176 155 161 chr1 221586537 221586713 -21077640 - L1MCa LINE L1 -4777 1830 1654 807 165 0 0 chr1 221586713 221586846 -21077507 - FLAM_C SINE Alu 0 143 11 3643 176 155 161 chr1 221586846 221588024 -21076329 - L1MCa LINE L1 -4953 1654 119 2620 53 0 0 chr1 221588024 221588326 -21076027 - AluY SINE Alu -9 302 1 3643 176 155 161 chr1 221588326 221588443 -21075910 - L1MCa LINE L1 -6488 119 3 527 194 31 0 chr1 221588681 221588779 -21075574 + AluJ/FLAM SINE Alu 2 102 -210 1278 138 5 10 chr1 221588786 221588982 -21075371 + AluJo SINE Alu 65 259 -53 2185 130 3 0 chr1 221589019 221589318 -21075035 - AluSx SINE Alu -12 300 1 1817 144 39 18 chr1 221589353 221589638 -21074715 + AluSx SINE Alu 1 291 -21 2135 124 6 16 chr1 221589656 221589971 -21074382 - AluJo SINE Alu 0 312 1 2097 101 25 0 chr1 221589975 221590261 -21074092 - AluSq SINE Alu -20 293 1 245 183 110 49 chr1 221590285 221590367 -21073986 - L1MC5 LINE L1 -272 7689 7603 683 205 66 69 chr1 221590385 221590614 -21073739 - L1MC5 LINE L1 -477 7484 7254 1466 156 7 93 chr1 221590614 221590971 -21073382 - AluJb SINE Alu 0 339 9 683 205 66 69 chr1 221590971 221591043 -21073310 - L1MC5 LINE L1 -707 7254 7183 335 248 92 52 chr1 221591084 221591237 -21073116 - L1MC4 LINE L1 -769 7068 6858 2019 120 10 37 chr1 221591291 221591424 -21072929 + AluSx SINE Alu 2 137 -175 2282 101 7 0 chr1 221591424 221591721 -21072632 + AluSq SINE Alu 1 299 -14 2019 120 10 37 chr1 221591721 221591887 -21072466 + AluSx SINE Alu 137 293 -19 718 189 30 0 chr1 221592253 221592385 -21071968 + FRAM SINE Alu 17 152 -24 2122 96 60 0 chr1 221592765 221593047 -21071306 - AluSx SINE Alu -13 299 1 443 289 77 0 chr1 221593156 221593312 -21071041 + MER117 DNA MER1_type 4 171 -26 311 214 0 0 chr1 221593939 221593995 -21070358 - MER101 LTR ERV1 -60 414 359 284 300 18 18 chr1 221594847 221594957 -21069396 + L1ME LINE L1 141 250 -5955 2189 131 0 6 chr1 221594977 221595289 -21069064 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr1 221595542 221595570 -21068783 + AT_rich Low_complexity Low_complexity 1 28 0 574 283 88 76 chr1 221595660 221596137 -21068216 + L1ME LINE L1 914 1409 -4987 2386 74 6 35 chr1 221596137 221596448 -21067905 - AluY SINE Alu -9 302 1 574 283 88 76 chr1 221596448 221596868 -21067485 + L1ME LINE L1 1409 1822 -4574 1555 132 0 25 chr1 221597108 221597351 -21067002 + AluSx SINE Alu 58 294 -18 821 175 77 0 chr1 221597365 221597508 -21066845 + FRAM SINE Alu 1 146 -30 281 247 158 0 chr1 221597537 221597651 -21066702 + L1ME LINE L1 5459 5590 -531 996 143 60 42 chr1 221597665 221597881 -21066472 + MER39B LTR ERV1 434 653 0 581 251 82 6 chr1 221597886 221598057 -21066296 + L1ME LINE L1 5576 5759 -2049 255 264 0 14 chr1 221598051 221598123 -21066230 + L1P4 LINE L1 5517 5587 -578 * 353 206 52 31 chr1 221598163 221598260 -21066093 + L1ME LINE L1 5678 5776 -345 292 242 39 98 chr1 221598337 221598490 -21065863 + MARNA DNA Mariner 177 320 -266 1982 114 0 4 chr1 221598492 221598765 -21065588 - AluSx SINE Alu -5 307 36 2194 104 3 0 chr1 221598772 221599059 -21065294 + AluSx SINE Alu 1 288 -24 2494 82 0 3 chr1 221599228 221599533 -21064820 - AluSx SINE Alu -8 304 1 320 268 39 8 chr1 221599627 221599754 -21064599 - L1MC/D LINE L1 -2319 5489 5359 2939 102 39 5 chr1 221599820 221600251 -21064102 - Tigger2 DNA MER2_type 0 2718 2273 324 178 0 123 chr1 221600295 221600368 -21063985 - Tigger2 DNA MER2_type -2653 65 2 246 248 234 0 chr1 221600719 221600856 -21063497 - L1MC/D LINE L1 -1330 4816 4648 2617 54 0 0 chr1 221601071 221601369 -21062984 - AluY SINE Alu -13 298 1 347 158 32 74 chr1 221601998 221602093 -21062260 + MIR SINE MIR 127 217 -45 1142 142 0 0 chr1 221602093 221602255 -21062098 + FRAM SINE Alu 1 158 -18 2171 133 0 3 chr1 221602257 221602559 -21061794 + AluSx SINE Alu 1 301 -11 712 182 8 0 chr1 221602569 221602701 -21061652 + FLAM_A SINE Alu 1 133 0 520 231 82 0 chr1 221602767 221602901 -21061452 + MIR3 SINE MIR 63 207 -1 1113 251 31 8 chr1 221603194 221603449 -21060904 - MIR SINE MIR 0 262 2 1667 169 39 26 chr1 221604288 221604596 -21059757 - AluJo SINE Alu 0 312 1 2296 98 0 16 chr1 221604974 221605280 -21059073 - AluSx SINE Alu -11 301 1 2419 89 3 0 chr1 221605291 221605594 -21058759 - AluSp SINE Alu -8 305 2 1974 217 35 31 chr1 221605909 221606190 -21058163 + L1ME3A LINE L1 5613 5899 -271 2450 42 0 7 chr1 221606190 221606501 -21057852 + AluY SINE Alu 2 310 0 1974 217 35 31 chr1 221606501 221606761 -21057592 + L1ME3A LINE L1 5899 6157 -13 913 217 90 35 chr1 221606791 221607137 -21057216 + L1MC4a LINE L1 5692 6056 -1752 689 189 77 81 chr1 221607177 221607276 -21057077 + L1MC4a LINE L1 6205 6303 -1505 1369 132 68 0 chr1 221607276 221607495 -21056858 + MER46A DNA MER2_type 2 235 -1 689 189 77 81 chr1 221607495 221607601 -21056752 + L1MC4a LINE L1 6303 6411 -1397 2197 99 38 0 chr1 221607601 221607893 -21056460 - AluSq SINE Alu -9 304 2 689 189 77 81 chr1 221607893 221607946 -21056407 + L1MC4a LINE L1 6411 6463 -1345 802 61 20 0 chr1 221607952 221608051 -21056302 + AluSg/x SINE Alu 198 298 -12 3649 206 66 12 chr1 221608055 221609038 -21055315 + L1MC4a LINE L1 6470 7505 -303 580 237 47 28 chr1 221609026 221609241 -21055112 + L1MC4 LINE L1 7824 8042 0 * 21 57 0 0 chr1 221610274 221610309 -21054044 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr1 221611035 221611064 -21053289 + AT_rich Low_complexity Low_complexity 1 29 0 2075 121 47 10 chr1 221612102 221612399 -21051954 - AluSx SINE Alu -4 308 1 257 257 14 14 chr1 221612571 221612645 -21051708 - MARNA DNA Mariner -92 494 421 235 250 185 11 chr1 221612700 221612792 -21051561 + MARNA DNA Mariner 285 392 -194 716 277 134 26 chr1 221612805 221613435 -21050918 + L2 LINE L2 2542 3310 -3 334 301 6 45 chr1 221613437 221613593 -21050760 + MARNA DNA Mariner 413 562 -24 464 282 109 0 chr1 221613661 221613817 -21050536 + MIR SINE MIR 48 220 -42 1671 181 3 3 chr1 221614287 221614432 -21049921 - AluJo SINE Alu -30 282 135 2313 96 10 0 chr1 221614432 221614734 -21049619 - AluSx SINE Alu -7 305 1 1671 181 3 3 chr1 221614734 221614870 -21049483 - AluJo SINE Alu -176 136 1 2191 104 33 0 chr1 221615249 221615548 -21048805 - AluSp SINE Alu -4 309 1 1689 166 0 0 chr1 221615568 221615821 -21048532 - AluSx SINE Alu -59 253 1 1463 150 98 8 chr1 221616015 221616269 -21048084 + AluSx SINE Alu 24 300 -12 368 326 43 39 chr1 221616569 221616799 -21047554 - L3 LINE CR1 -269 1308 1078 837 203 82 30 chr1 221616804 221617036 -21047317 - MIR SINE MIR -1 261 18 1487 151 12 32 chr1 221617120 221617371 -21046982 + AluJo SINE Alu 35 280 -32 1813 148 25 0 chr1 221617393 221617670 -21046683 + AluJb SINE Alu 1 284 -28 207 209 0 0 chr1 221617889 221617932 -21046421 + T-rich Low_complexity Low_complexity 1 43 0 1298 148 70 4 chr1 221617980 221618223 -21046130 + L1MD3 LINE L1 7730 7988 -7 24 91 0 0 chr1 221618324 221618390 -21045963 + AT_rich Low_complexity Low_complexity 1 66 0 885 285 68 26 chr1 221618534 221618790 -21045563 - L1MC/D LINE L1 -1985 5823 5579 1960 145 0 22 chr1 221618790 221619101 -21045252 + AluSx SINE Alu 1 304 -8 885 285 68 26 chr1 221619101 221619207 -21045146 - L1MC/D LINE L1 -2229 5579 5479 2688 42 0 0 chr1 221619207 221619517 -21044836 + AluY SINE Alu 1 310 -1 885 285 68 26 chr1 221619517 221619700 -21044653 - L1MC/D LINE L1 -2329 5479 5254 1845 164 3 7 chr1 221620185 221620484 -21043869 + AluJo SINE Alu 1 298 -14 207 0 0 0 chr1 221620489 221620512 -21043841 + (CA)n Simple_repeat Simple_repeat 2 24 0 2157 106 10 0 chr1 221620585 221620888 -21043465 - AluSg SINE Alu -3 307 2 244 159 87 58 chr1 221620924 221620993 -21043360 - L1MC/D LINE L1 -1487 4659 4589 390 254 160 77 chr1 221621102 221621452 -21042901 - L1MC/D LINE L1 -1686 4460 4082 2269 93 14 0 chr1 221621574 221621864 -21042489 + AluSx SINE Alu 1 294 -18 834 241 6 11 chr1 221623553 221623727 -21040626 + FAM SINE Alu 1 173 -2 22 56 0 0 chr1 221624483 221624519 -21039834 + AT_rich Low_complexity Low_complexity 1 36 0 833 309 94 60 chr1 221625018 221625105 -21039248 + L1MC4a LINE L1 4509 4592 -1554 2303 114 0 0 chr1 221625105 221625404 -21038949 - AluSx SINE Alu -13 299 1 833 309 94 60 chr1 221625404 221625877 -21038476 + L1MC4a LINE L1 4592 5107 -1039 1814 155 36 20 chr1 221625877 221626180 -21038173 - AluSx SINE Alu -4 308 1 833 309 94 60 chr1 221626180 221626418 -21037935 + L1MC4a LINE L1 5107 5335 -811 1487 168 50 46 chr1 221626420 221626723 -21037630 + AluJb SINE Alu 1 304 -8 748 219 14 0 chr1 221626724 221626870 -21037483 + AluJo/FRAM SINE Alu 134 281 -31 1099 281 57 39 chr1 221626889 221626996 -21037357 + L1MC4a LINE L1 5337 5441 -2367 2523 71 0 0 chr1 221626996 221627307 -21037046 - AluSx SINE Alu -1 311 1 1099 281 57 39 chr1 221627307 221627794 -21036559 + L1MC4a LINE L1 5441 5942 -1866 2224 117 3 3 chr1 221627854 221628163 -21036190 + AluSg SINE Alu 1 309 -1 3646 108 52 90 chr1 221628228 221628997 -21035356 - L1MA4 LINE L1 -3 6297 5558 2261 112 3 0 chr1 221629046 221629350 -21035003 - AluSc SINE Alu -4 305 1 1720 161 16 47 chr1 221630043 221630365 -21033988 - AluJb SINE Alu 0 312 1 1519 182 37 19 chr1 221630390 221630659 -21033694 - AluJo SINE Alu -38 274 1 1931 78 0 119 chr1 221630671 221631006 -21033347 - AluY SINE Alu -6 295 1 2119 128 0 0 chr1 221631006 221631304 -21033049 - AluSx SINE Alu -14 298 1 2396 93 0 0 chr1 221631388 221631699 -21032654 - AluSq SINE Alu -2 311 1 780 128 28 43 chr1 221631712 221631853 -21032500 + AluSg/x SINE Alu 159 297 -12 1008 155 5 31 chr1 221632609 221632802 -21031551 - AluJb SINE Alu -4 308 121 2154 117 0 31 chr1 221633793 221634110 -21030243 - AluSx SINE Alu -5 307 1 2347 85 10 3 chr1 221634125 221634432 -21029921 - AluSg SINE Alu -1 309 1 740 217 13 6 chr1 221634484 221634641 -21029712 + MER58 DNA MER1_type 1 158 -2262 830 248 73 54 chr1 221634823 221635520 -21028833 + L1MCc LINE L1 1346 2273 -4849 2286 107 17 0 chr1 221635713 221636011 -21028342 + AluSx SINE Alu 1 303 -9 947 192 52 0 chr1 221636049 221636221 -21028132 - MER5A DNA MER1_type -2 187 7 459 234 50 96 chr1 221636232 221636301 -21028052 + L1MCc LINE L1 2799 2870 -4252 1699 167 56 0 chr1 221636301 221636589 -21027764 + AluJb SINE Alu 1 304 -8 459 234 50 96 chr1 221636589 221636737 -21027616 + L1MCc LINE L1 2870 3006 -4116 641 152 0 19 chr1 221636738 221636843 -21027510 + AluJ SINE Alu 2 104 -208 1889 101 2 174 chr1 221636843 221637251 -21027102 - LTR14B LTR ERVK 0 608 7 1180 143 24 52 chr1 221637254 221637464 -21026889 + AluJo SINE Alu 95 298 -14 1656 233 39 51 chr1 221637466 221637490 -21026863 + L1MCc LINE L1 2961 2984 -3957 2131 109 10 26 chr1 221637490 221637794 -21026559 + AluSx SINE Alu 1 299 -13 1656 233 39 51 chr1 221637794 221638431 -21025922 + L1MCc LINE L1 2984 3614 -3327 21 57 0 0 chr1 221638909 221638944 -21025409 + AT_rich Low_complexity Low_complexity 1 35 0 1725 116 85 37 chr1 221638995 221639289 -21025064 - AluJb SINE Alu -4 308 1 598 159 159 16 chr1 221639291 221639473 -21024880 - L1M4b LINE L1 -5328 1531 1324 27 29 0 0 chr1 221639536 221639570 -21024783 + AT_rich Low_complexity Low_complexity 1 34 0 2120 83 7 17 chr1 221639620 221639909 -21024444 + AluSx SINE Alu 1 286 -26 241 282 101 34 chr1 221639918 221640067 -21024286 - L1M4b LINE L1 -5667 1188 1030 336 313 68 23 chr1 221640310 221640486 -21023867 - L1M4b LINE L1 -6656 203 20 2798 189 31 2 chr1 221640844 221641383 -21022970 - MER68 LTR ERV1 0 562 8 195 297 54 27 chr1 221642286 221642360 -21021993 - MIR SINE MIR -98 164 89 732 44 0 0 chr1 221642404 221642495 -21021858 - AluSg/x SINE Alu -11 299 209 323 206 10 82 chr1 221642514 221642611 -21021742 - L1MC4 LINE L1 -1339 6703 6614 2311 108 0 0 chr1 221642766 221643063 -21021290 + AluSq SINE Alu 1 297 -16 24 32 0 0 chr1 221643367 221643398 -21020955 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 221643749 221643771 -21020582 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 221643808 221643832 -21020521 + AT_rich Low_complexity Low_complexity 1 24 0 2206 73 52 0 chr1 221643869 221644156 -21020197 + AluSg SINE Alu 1 302 -8 1890 147 0 11 chr1 221644969 221645282 -21019071 - AluSx SINE Alu 0 310 1 260 70 23 0 chr1 221645421 221645464 -21018889 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1948 100 29 7 chr1 221645466 221645745 -21018608 - AluSx SINE Alu -27 285 1 183 80 0 0 chr1 221645745 221645770 -21018583 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1738 175 3 18 chr1 221645770 221646056 -21018297 - AluJb SINE Alu -30 282 1 6387 224 50 30 chr1 221646385 221648901 -21015452 - L1MC1 LINE L1 -3 6330 3867 2576 61 0 3 chr1 221648901 221649213 -21015140 + AluY SINE Alu 1 311 0 6387 224 50 30 chr1 221649213 221649323 -21015030 - L1MC1 LINE L1 -2466 3867 3761 586 215 39 15 chr1 221649323 221649453 -21014900 - FLAM_A SINE Alu 0 133 1 6387 224 50 30 chr1 221649453 221650585 -21013768 - L1MC1 LINE L1 -2572 3761 2436 2056 118 38 0 chr1 221650585 221650872 -21013481 + AluSx SINE Alu 1 298 -14 6387 224 50 30 chr1 221650872 221650925 -21013428 - L1MC1 LINE L1 -3897 2436 2386 363 44 0 0 chr1 221651222 221651267 -21013086 + (CA)n Simple_repeat Simple_repeat 2 46 0 743 285 107 0 chr1 221651394 221651805 -21012548 + L1M4 LINE L1 4466 4920 -1226 2161 117 0 14 chr1 221651808 221652099 -21012254 + AluSx SINE Alu 5 291 -21 1035 192 53 33 chr1 221652199 221652444 -21011909 - Tigger3(Golem) DNA MER2_type -2779 250 1 397 319 68 21 chr1 221652444 221652626 -21011727 - L1MC/D LINE L1 -2027 5781 5591 1316 174 47 40 chr1 221652631 221652929 -21011424 + MER44D DNA MER2_type 1 570 -39 332 302 72 49 chr1 221652949 221653215 -21011138 - L1MC/D LINE L1 -575 5587 5317 367 243 234 0 chr1 221653598 221653709 -21010644 - MIR SINE MIR -123 139 3 1531 143 9 0 chr1 221653872 221654095 -21010258 + AluJb SINE Alu 1 225 -87 1865 165 3 7 chr1 221654185 221654482 -21009871 + AluJb SINE Alu 6 301 -11 1289 175 112 19 chr1 221654536 221654805 -21009548 + AluJb SINE Alu 1 294 -18 2105 150 0 0 chr1 221655496 221655802 -21008551 + AluSx SINE Alu 1 306 -6 2009 102 53 36 chr1 221656824 221657127 -21007226 - AluSq SINE Alu -5 308 1 1909 153 0 14 chr1 221657872 221658166 -21006187 + AluJb SINE Alu 9 298 -14 352 328 52 0 chr1 221658792 221658908 -21005445 - L2 LINE L2 -17 3255 3134 222 298 35 21 chr1 221659273 221659414 -21004939 + GA-rich Low_complexity Low_complexity 5 147 0 2026 106 6 61 chr1 221659507 221659818 -21004535 + AluSq SINE Alu 1 294 -19 2306 103 7 0 chr1 221660572 221660872 -21003481 + AluSx SINE Alu 2 303 -9 679 209 252 5 chr1 221661137 221661343 -21003010 + MIR SINE MIR 5 261 -1 276 225 63 133 chr1 221662305 221662515 -21001838 + MIR3 SINE MIR 2 192 -70 1852 161 0 10 chr1 221663119 221663417 -21000936 + AluJo SINE Alu 1 295 -17 2232 114 3 0 chr1 221663423 221663720 -21000633 + AluSp SINE Alu 1 298 -15 27 0 0 0 chr1 221663828 221663855 -21000498 + AT_rich Low_complexity Low_complexity 1 27 0 210 71 0 0 chr1 221664425 221664453 -20999900 + (TG)n Simple_repeat Simple_repeat 2 29 0 1413 231 65 18 chr1 221664529 221664928 -20999425 + L1ME3A LINE L1 5740 6157 -13 2283 107 3 0 chr1 221665528 221665827 -20998526 - AluSq SINE Alu -13 300 1 24 32 0 0 chr1 221665909 221665940 -20998413 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 221666546 221666567 -20997786 + AT_rich Low_complexity Low_complexity 1 21 0 890 139 67 24 chr1 221666582 221666747 -20997606 + FRAM SINE Alu 1 166 -10 1781 192 186 23 chr1 221666749 221667191 -20997162 - MLT1F LTR MaLR -28 514 1 239 323 140 30 chr1 221667312 221667547 -20996806 - L2 LINE L2 -54 3218 2958 2254 96 3 3 chr1 221668943 221669236 -20995117 - AluSg SINE Alu -17 293 1 2514 73 0 0 chr1 221670285 221670585 -20993768 + AluSg SINE Alu 1 300 -10 1544 166 12 68 chr1 221670591 221670916 -20993437 + AluJo SINE Alu 3 309 -3 2131 141 0 3 chr1 221671120 221671433 -20992920 + AluJb SINE Alu 1 312 0 2445 84 0 0 chr1 221671443 221671740 -20992613 + AluSx SINE Alu 1 297 -15 1752 158 42 24 chr1 221672587 221672923 -20991430 - L1MC3 LINE L1 0 7785 7444 225 345 0 0 chr1 221673600 221673658 -20990695 + L2 LINE L2 3191 3248 -24 297 109 0 0 chr1 221673663 221673709 -20990644 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 2132 129 0 0 chr1 221673780 221674075 -20990278 + AluSg SINE Alu 1 295 -15 225 0 0 0 chr1 221675110 221675135 -20989218 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2559 57 0 0 chr1 221676998 221677297 -20987056 + AluY SINE Alu 1 299 -12 1110 151 0 0 chr1 221677310 221677476 -20986877 + AluSg/x SINE Alu 135 300 -12 2164 127 10 7 chr1 221677690 221677997 -20986356 - AluJb SINE Alu 0 312 5 2375 76 3 7 chr1 221678005 221678308 -20986045 - AluSq SINE Alu -1 312 11 1024 107 20 7 chr1 221678310 221678459 -20985894 - AluSq/x SINE Alu -161 151 1 2660 42 0 13 chr1 221678618 221678931 -20985422 - AluY SINE Alu -2 309 1 2183 123 0 3 chr1 221679144 221679446 -20984907 + AluSx SINE Alu 1 301 -11 30 0 0 0 chr1 221679473 221679503 -20984850 + AT_rich Low_complexity Low_complexity 1 30 0 763 156 14 35 chr1 221679511 221679652 -20984701 + FRAM SINE Alu 32 169 -7 816 248 140 40 chr1 221679652 221679923 -20984430 - L1ME LINE L1 -467 5764 5439 2306 108 3 0 chr1 221679923 221680229 -20984124 + AluSx SINE Alu 1 307 -5 816 248 140 40 chr1 221680229 221680356 -20983997 - L1ME LINE L1 -792 5439 5326 662 139 0 0 chr1 221680411 221680497 -20983856 - AluS SINE Alu -225 87 2 2287 99 0 7 chr1 221680498 221680802 -20983551 - AluSx SINE Alu -10 302 1 606 227 23 16 chr1 221680845 221680973 -20983380 - FLAM_C SINE Alu -14 129 1 1504 206 104 25 chr1 221680986 221681124 -20983229 - L1ME LINE L1 -3066 3149 3023 2384 87 7 0 chr1 221681124 221681424 -20982929 - AluSx SINE Alu -10 302 1 1504 206 104 25 chr1 221681424 221681716 -20982637 - L1ME LINE L1 -3192 3023 2685 978 257 20 33 chr1 221681721 221682025 -20982328 - L1ME LINE L1 -3562 2653 2354 266 0 0 29 chr1 221682037 221682072 -20982281 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 187 215 46 46 chr1 221782210 221782275 -20882078 + L3 LINE CR1 1442 1506 -71 191 245 20 0 chr1 221782728 221782777 -20881576 - MIR3 SINE MIR -6 202 153 185 307 105 61 chr1 221782911 221783025 -20881328 - MIR3 SINE MIR -15 193 75 2151 98 3 11 chr1 221783523 221783840 -20880513 - AluSq SINE Alu 0 315 1 428 236 27 18 chr1 221783840 221783950 -20880403 + Zaphod DNA AcHobo 3921 4031 0 1815 122 49 3 chr1 221784595 221784882 -20879471 + AluSx SINE Alu 1 300 -12 489 300 6 35 chr1 221784930 221785100 -20879253 + MIR3 SINE MIR 35 199 -9 334 279 81 0 chr1 221785502 221785613 -20878740 + MIR SINE MIR 139 258 -4 * 348 275 99 53 chr1 221785594 221785725 -20878628 - L2 LINE L2 -9 3263 3127 406 306 83 21 chr1 221785916 221786109 -20878244 + MLT1K LTR MaLR 102 306 -282 261 0 0 0 chr1 221786205 221786234 -20878119 + (GA)n Simple_repeat Simple_repeat 1 29 0 311 248 158 15 chr1 221786237 221786370 -20877983 + MLT1K LTR MaLR 437 588 0 1652 157 64 15 chr1 221786542 221786834 -20877519 + AluJo SINE Alu 2 306 0 2148 113 7 19 chr1 221786891 221787201 -20877152 + AluSq SINE Alu 1 306 -7 275 308 38 8 chr1 221788151 221788284 -20876069 - L1ME LINE L1 -6182 214 78 2285 104 0 10 chr1 221788360 221788667 -20875686 + AluSx SINE Alu 1 304 -8 524 248 25 70 chr1 221788683 221788925 -20875428 - HAL1b LINE L1 -555 793 563 421 245 66 9 chr1 221789560 221789666 -20874687 + MIR SINE MIR 30 141 -121 1962 161 0 25 chr1 221789687 221790004 -20874349 + AluJo SINE Alu 1 309 -3 216 97 0 0 chr1 221790646 221790677 -20873676 + (A)n Simple_repeat Simple_repeat 1 31 0 295 269 150 62 chr1 221790716 221790976 -20873377 + MLT1K LTR MaLR 209 491 -97 530 246 137 6 chr1 221791010 221791193 -20873160 + MER20B DNA MER1_type 18 224 -559 2210 192 49 20 chr1 221791225 221791714 -20872639 + MLT1D LTR MaLR 3 505 0 920 246 124 75 chr1 221792114 221792631 -20871722 + MER20B DNA MER1_type 236 777 -6 1734 181 13 23 chr1 221793081 221793391 -20870962 - AluJb SINE Alu -5 307 1 227 336 147 9 chr1 221793400 221793516 -20870837 + L2 LINE L2 3173 3304 -9 1767 116 13 70 chr1 221795078 221795380 -20868973 - AluJo SINE Alu -27 285 1 327 247 22 35 chr1 221795569 221795692 -20868661 + MIR SINE MIR 101 221 -41 223 217 17 50 chr1 221796303 221796363 -20867990 - L2 LINE L2 -7 3265 3208 647 244 111 0 chr1 221797089 221797269 -20867084 + MIR SINE MIR 47 246 -16 438 217 82 78 chr1 221797485 221797686 -20866667 + MIR SINE MIR 12 210 -52 1216 245 97 69 chr1 221799986 221800384 -20863969 - MLT1H1 LTR MaLR -1 554 136 1739 148 59 46 chr1 221800384 221800687 -20863666 - AluJb SINE Alu -5 307 1 1216 245 97 69 chr1 221800687 221800827 -20863526 - MLT1H1 LTR MaLR -419 136 1 869 187 41 6 chr1 221801010 221801181 -20863172 + L1ME1 LINE L1 5942 6118 -48 2440 88 7 59 chr1 221801182 221801355 -20862998 + L1MA2 LINE L1 5902 6082 -222 2528 73 3 0 chr1 221801355 221801658 -20862695 + AluSp SINE Alu 1 304 -9 2440 88 7 59 chr1 221801658 221801905 -20862448 + L1MA2 LINE L1 6082 6300 -4 2214 101 3 31 chr1 221802597 221802914 -20861439 + AluSq SINE Alu 1 308 -5 847 248 211 27 chr1 221804840 221805215 -20859138 - LTR67 LTR ERVL 0 557 114 26 30 0 0 chr1 221805345 221805378 -20858975 + AT_rich Low_complexity Low_complexity 1 33 0 2283 164 86 13 chr1 221805438 221805906 -20858447 - MLT1D LTR MaLR 0 505 4 717 293 98 3 chr1 221806382 221806679 -20857674 + L2 LINE L2 2449 2773 -541 242 121 0 0 chr1 221806685 221806718 -20857635 - LTR16B LTR ERVL 0 464 432 1957 86 4 20 chr1 221806719 221806974 -20857379 - AluSp SINE Alu -62 251 1 2043 118 28 0 chr1 221806978 221807266 -20857087 - AluSg SINE Alu -14 296 1 293 238 20 59 chr1 221807296 221807397 -20856956 + L3 LINE CR1 909 1005 -572 * 353 241 208 33 chr1 221807393 221807614 -20856739 - MIR SINE MIR 0 262 7 1933 113 31 14 chr1 221808749 221809042 -20855311 - AluSx SINE Alu -14 298 1 1565 150 15 62 chr1 221809063 221809402 -20854951 - L1MC/D LINE L1 -492 5750 5428 1356 163 89 43 chr1 221809414 221809696 -20854657 - AluJo SINE Alu -12 300 6 262 172 111 91 chr1 221809701 221809721 -20854632 - L1MC/D LINE L1 -919 5440 5422 2315 92 10 3 chr1 221809721 221810024 -20854329 - AluSg SINE Alu -5 305 1 262 172 111 91 chr1 221810024 221810102 -20854251 - L1MC/D LINE L1 -937 5422 5340 1231 107 53 0 chr1 221811437 221811624 -20852729 + L1PA10 LINE L1 5969 6165 -3 2193 131 0 0 chr1 221811926 221812232 -20852121 + AluSx SINE Alu 1 306 -6 223 284 74 12 chr1 221812799 221812880 -20851473 - L2 LINE L2 -50 3222 3137 293 311 66 0 chr1 221812930 221812997 -20851356 - MIR SINE MIR -149 113 35 925 151 172 0 chr1 221812997 221813183 -20851170 - MER20 DNA MER1_type -1 218 1 293 311 66 0 chr1 221813183 221813221 -20851132 - MIR SINE MIR -227 35 1 995 208 36 11 chr1 221813602 221813947 -20850406 - MLT1I LTR MaLR 0 409 1 341 276 0 7 chr1 221814905 221815057 -20849296 + (TATG)n Simple_repeat Simple_repeat 3 153 0 272 27 27 0 chr1 221816559 221816596 -20847757 + (CA)n Simple_repeat Simple_repeat 2 39 0 * 312 27 0 0 chr1 221816595 221816632 -20847721 + (TC)n Simple_repeat Simple_repeat 1 37 0 786 228 184 11 chr1 221816993 221817449 -20846904 + MER45 DNA AcHobo 3 628 -325 951 179 6 6 chr1 221817535 221817703 -20846650 + MER45 DNA AcHobo 1412 1579 -2 543 171 0 0 chr1 221818777 221818865 -20845488 + MER53 DNA DNA 102 189 0 831 276 130 27 chr1 221819189 221819628 -20844725 - MLT1L LTR MaLR -6 609 126 2278 84 3 3 chr1 221820538 221820853 -20843500 + AluSq SINE Alu 1 315 0 2413 83 3 0 chr1 221822487 221822787 -20841566 - AluSp SINE Alu -12 301 1 4657 155 32 33 chr1 221823212 221823786 -20840567 - L1MB5 LINE L1 -3 6171 5598 2051 129 10 3 chr1 221823786 221824081 -20840272 - AluSx SINE Alu -15 297 1 4657 155 32 33 chr1 221824081 221824845 -20839508 - L1MB5 LINE L1 -576 5598 4833 1904 144 0 23 chr1 221825105 221825410 -20838943 - AluSx SINE Alu -10 302 5 1008 169 22 11 chr1 221825547 221825725 -20838628 + MER21B LTR ERV1 1 180 -683 361 115 0 0 chr1 221825765 221825817 -20838536 + L1M4 LINE L1 1003 1054 -5488 2193 115 0 3 chr1 221825857 221826161 -20838192 - AluSg SINE Alu -7 303 1 1000 176 18 106 chr1 221826194 221826524 -20837829 + L1M4 LINE L1 1056 1356 -5186 878 229 98 37 chr1 221826521 221826774 -20837579 + L1 LINE L1 3207 3496 -2650 * 1939 87 21 93 chr1 221826774 221827108 -20837245 + AluYb8 SINE Alu 1 310 -8 878 229 98 37 chr1 221827108 221827260 -20837093 + L1 LINE L1 3496 3637 -2509 519 209 85 0 chr1 221827264 221827393 -20836960 - MER21B LTR ERV1 -54 809 670 437 179 193 48 chr1 221827382 221827527 -20836826 - MER21B LTR ERV1 -526 337 172 * 711 182 31 169 chr1 221827528 221827847 -20836506 - L1M4 LINE L1 -5379 1163 889 1169 249 57 55 chr1 221828002 221828336 -20836017 - L1M4 LINE L1 -5758 784 447 1970 117 0 76 chr1 221828336 221828652 -20835701 + AluSq SINE Alu 1 292 -21 1169 249 57 55 chr1 221828652 221828771 -20835582 - L1M4 LINE L1 -6095 447 330 777 270 91 8 chr1 221828897 221829198 -20835155 + MLT1J LTR MaLR 131 497 -14 447 311 101 6 chr1 221829810 221830047 -20834306 + MIR SINE MIR 3 258 -4 785 169 0 15 chr1 221830187 221830317 -20834036 + FLAM_A SINE Alu 1 128 -5 6524 175 58 35 chr1 221830776 221830886 -20833467 - Charlie1a DNA MER1_type -1306 1455 1349 1480 171 173 42 chr1 221830886 221831290 -20833063 + MSTB2 LTR MaLR 1 457 0 6524 175 58 35 chr1 221831290 221831439 -20832914 - Charlie1a DNA MER1_type -1412 1349 1205 1906 201 44 34 chr1 221831439 221831937 -20832416 + MLT1D LTR MaLR 3 505 0 2070 151 0 0 chr1 221831938 221832236 -20832117 + AluSx SINE Alu 1 298 -14 6524 175 58 35 chr1 221832236 221833113 -20831240 - Charlie1a DNA MER1_type -1556 1205 273 2575 18 0 0 chr1 221833113 221833422 -20830931 + AluYb8 SINE Alu 15 323 0 6524 175 58 35 chr1 221833422 221833701 -20830652 - Charlie1a DNA MER1_type -2488 273 2 301 242 78 78 chr1 221834166 221834221 -20830132 - L1ME4a LINE L1 0 6121 6067 2385 92 7 0 chr1 221834221 221834525 -20829828 + AluSg SINE Alu 1 306 -4 2264 102 10 0 chr1 221834526 221834831 -20829522 + AluSg SINE Alu 1 308 -2 301 242 78 78 chr1 221834831 221834926 -20829427 - L1ME4a LINE L1 -53 6068 5969 225 264 77 22 chr1 221834933 221835024 -20829329 - L1ME4a LINE L1 -209 5912 5817 2210 108 0 3 chr1 221835039 221835334 -20829019 + AluY SINE Alu 1 294 -17 2502 208 123 34 chr1 221835514 221836251 -20828102 - MER21B LTR ERV1 -48 815 13 373 316 94 17 chr1 221836266 221836500 -20827853 - L1ME4a LINE L1 -523 5598 5347 788 135 8 121 chr1 221836681 221836918 -20827435 - MER4A LTR ERV1 -135 529 261 268 125 375 14 chr1 221836918 221836990 -20827363 - MER4A LTR ERV1 -566 98 1 17774 74 47 21 chr1 221836991 221838234 -20826119 - MER4A-int LTR ERV1 0 6598 5388 8542 58 0 0 chr1 221838234 221840071 -20824282 - L1PA6 LINE L1 -3 6151 4317 17774 74 47 21 chr1 221840071 221840998 -20823355 - MER4A-int LTR ERV1 -1210 5388 4347 2382 93 0 13 chr1 221840998 221841310 -20823043 + AluSx SINE Alu 1 308 -4 17774 74 47 21 chr1 221841310 221841758 -20822595 - MER4A-int LTR ERV1 -2251 4347 3912 1771 93 144 35 chr1 221841744 221841832 -20822521 - MER4A-int LTR ERV1 -3268 3330 3253 * 4160 71 36 0 chr1 221841832 221842366 -20821987 - MER41A LTR ERV1 -1 553 1 1771 93 144 35 chr1 221842366 221842674 -20821679 - MER4A-int LTR ERV1 -3345 3253 2891 2431 94 0 0 chr1 221842674 221842983 -20821370 + AluY SINE Alu 1 309 -2 1074 233 53 19 chr1 221842990 221843256 -20821097 + MLT1J LTR MaLR 211 485 -26 3971 219 39 80 chr1 221843790 221844482 -20819871 - MLT1D-int LTR MaLR -212 1159 531 2181 108 0 29 chr1 221844482 221844797 -20819556 - AluY SINE Alu -5 306 1 3971 219 39 80 chr1 221844797 221845260 -20819093 - MLT1D-int LTR MaLR -840 531 51 591 133 48 29 chr1 221845260 221845365 -20818988 - FLAM_A SINE Alu -15 127 21 251 26 26 26 chr1 221845366 221845404 -20818949 - MLT1D-int LTR MaLR -1320 51 14 * 402 123 0 0 chr1 221845396 221845453 -20818900 - MLT1D-int LTR MaLR -1312 59 3 997 192 62 10 chr1 221845455 221845648 -20818705 - MLT1D LTR MaLR 0 505 303 740 84 0 8 chr1 221845653 221845772 -20818581 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 2253 108 7 0 chr1 221845775 221846070 -20818283 - AluSq SINE Alu -16 297 1 2189 105 7 0 chr1 221846070 221846356 -20817997 - AluSx SINE Alu -3 309 22 4148 238 67 21 chr1 221846366 221847661 -20816692 + L1ME2 LINE L1 2772 4126 -2020 2256 84 3 13 chr1 221847689 221847988 -20816365 + AluSc SINE Alu 1 296 -13 530 259 180 16 chr1 221847994 221848249 -20816104 + L1ME2 LINE L1 4834 5130 -1016 622 152 185 33 chr1 221848251 221848266 -20816087 + AluJo SINE Alu 121 132 -180 1919 147 3 26 chr1 221848266 221848579 -20815774 + AluSq SINE Alu 1 306 -7 622 152 185 33 chr1 221848579 221848714 -20815639 + AluJo SINE Alu 132 294 -18 632 190 15 0 chr1 221848716 221848853 -20815500 + (TATATG)n Simple_repeat Simple_repeat 6 144 0 342 281 0 0 chr1 221848854 221848943 -20815410 + L1MC4 LINE L1 6615 6703 -1339 1012 220 37 37 chr1 221848943 221849211 -20815142 + L1ME2 LINE L1 5881 6148 -16 22 35 0 0 chr1 221849373 221849402 -20814951 + AT_rich Low_complexity Low_complexity 1 29 0 2209 98 44 3 chr1 221849484 221849779 -20814574 + AluSq SINE Alu 1 307 -6 1469 132 83 73 chr1 221850134 221850422 -20813931 - AluJo SINE Alu -21 291 1 1695 150 0 0 chr1 221850840 221851093 -20813260 + AluSp SINE Alu 1 253 -60 300 261 22 97 chr1 221851199 221851333 -20813020 + MER21B LTR ERV1 688 811 -52 654 184 183 21 chr1 221851376 221851587 -20812766 + MER31A LTR ERV1 240 543 0 1704 146 13 17 chr1 221851987 221852288 -20812065 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr1 221852568 221852596 -20811757 + AT_rich Low_complexity Low_complexity 1 28 0 722 119 48 8 chr1 221852724 221852850 -20811503 - L1MB3 LINE L1 -3 6180 6050 2327 99 0 3 chr1 221852868 221853162 -20811191 - AluSp SINE Alu -18 295 3 878 180 29 17 chr1 221853204 221853376 -20810977 - L1MC1 LINE L1 -19 6314 6141 1429 177 15 87 chr1 221853376 221853618 -20810735 - L1MB2 LINE L1 -109 6062 5804 1626 146 115 4 chr1 221853618 221853878 -20810475 - AluSg1 SINE Alu -15 294 6 1429 177 15 87 chr1 221853878 221853893 -20810460 - L1MB2 LINE L1 -367 5804 5789 2418 74 7 3 chr1 221853893 221854189 -20810164 - AluSq SINE Alu -16 297 1 1429 177 15 87 chr1 221854189 221854320 -20810033 - L1MB2 LINE L1 -382 5789 5701 474 165 35 17 chr1 221854433 221854548 -20809805 - MER4B-int LTR ERV1 -4891 1867 1751 1214 148 131 9 chr1 221854548 221854777 -20809576 + LTR8 LTR ERV1 1 257 -434 4148 72 75 28 chr1 221854777 221855469 -20808884 - MER4-int LTR ERV1 -4103 2495 1771 1452 72 67 113 chr1 221855467 221855716 -20808637 - MER4-int LTR ERV1 -4266 1268 1009 * 2381 74 3 0 chr1 221855716 221856025 -20808328 - AluSp SINE Alu -3 310 1 1452 72 67 113 chr1 221856025 221856126 -20808227 - MER4-int LTR ERV1 -4525 1009 504 238 152 0 43 chr1 221856147 221856193 -20808160 - LTR49 LTR ERV1 -279 316 273 3224 82 127 59 chr1 221856310 221856884 -20807469 - MER4B-int LTR ERV1 -5980 618 6 1548 115 5 0 chr1 221856910 221857119 -20807234 - MER4B LTR ERV1 0 610 401 331 217 333 8 chr1 221857567 221857687 -20806666 - MIR SINE MIR -102 160 2 309 281 117 8 chr1 221858318 221858446 -20805907 + L1ME4a LINE L1 5952 6093 -28 325 281 145 66 chr1 221860078 221860306 -20804047 + MIR SINE MIR 13 258 -4 402 260 62 88 chr1 221860509 221860701 -20803652 - MIR3 SINE MIR -12 196 10 285 240 190 11 chr1 221861073 221861252 -20803101 + L1ME4a LINE L1 5803 6013 -108 2043 120 0 0 chr1 221861252 221861543 -20802810 + AluSq SINE Alu 1 291 -22 2032 131 0 0 chr1 221861910 221862207 -20802146 - AluSx SINE Alu -15 297 1 965 157 36 0 chr1 221863065 221863231 -20801122 - FRAM SINE Alu -12 164 1 24 32 0 0 chr1 221863364 221863395 -20800958 + AT_rich Low_complexity Low_complexity 1 31 0 814 122 0 0 chr1 221863707 221863822 -20800531 - AluSg/x SINE Alu -10 300 186 267 242 15 15 chr1 221863944 221864010 -20800343 - MLT1K LTR MaLR -11 577 512 29 0 0 0 chr1 221864328 221864357 -20799996 + AT_rich Low_complexity Low_complexity 1 29 0 746 272 59 8 chr1 221864602 221864841 -20799512 - MIR SINE MIR -11 251 1 2021 121 20 0 chr1 221864949 221865246 -20799107 + AluJb SINE Alu 1 303 -9 306 164 0 0 chr1 221865246 221865301 -20799052 + GA-rich Low_complexity Low_complexity 1 55 0 567 260 80 45 chr1 221865401 221865601 -20798752 - L2 LINE L2 -802 2512 2306 527 294 133 47 chr1 221865683 221865805 -20798548 + L1ME LINE L1 5324 5434 -687 1165 218 104 19 chr1 221865805 221866122 -20798231 + MER2 DNA MER2_type 1 344 0 527 294 133 47 chr1 221866122 221866451 -20797902 + L1ME LINE L1 5434 5814 -307 2369 132 89 0 chr1 221866686 221867079 -20797274 - MSTA LTR MaLR 0 428 1 298 261 149 45 chr1 221869639 221869773 -20794580 + MER5B DNA MER1_type 18 165 -13 343 274 20 29 chr1 221870403 221870505 -20793848 + L2 LINE L2 3167 3267 -5 2116 113 0 10 chr1 221871760 221872060 -20792293 + AluSx SINE Alu 3 299 -13 181 390 34 7 chr1 221872077 221872223 -20792130 + L2 LINE L2 2594 2743 -571 265 222 0 0 chr1 221873703 221873748 -20790605 - FLAM_A SINE Alu -79 54 10 889 126 7 0 chr1 221873778 221873913 -20790440 - FLAM_C SINE Alu -7 136 1 1747 148 7 0 chr1 221874263 221874546 -20789807 + AluJb SINE Alu 1 285 -27 1246 191 188 10 chr1 221874758 221875062 -20789291 - MLT1A1 LTR MaLR -7 358 1 487 162 0 4 chr1 221875611 221875827 -20788526 + AluJb SINE Alu 1 303 -9 415 254 32 32 chr1 221876261 221876387 -20787966 - L2 LINE L2 0 3313 3188 413 294 30 119 chr1 221876747 221877050 -20787303 - L2 LINE L2 -4 3268 2993 1533 139 70 0 chr1 221877282 221877540 -20786813 - AluJb SINE Alu -31 281 6 1910 107 76 0 chr1 221878080 221878369 -20785984 + AluSx SINE Alu 1 311 -1 4332 185 26 16 chr1 221878859 221879712 -20784641 - MER6 DNA MER2_type -2 863 3 1969 190 16 37 chr1 221879860 221880292 -20784061 - L1MB5 LINE L1 -11 6163 5741 221 283 130 55 chr1 221880551 221880687 -20783666 - MIR SINE MIR -63 145 10 833 241 41 87 chr1 221881226 221881439 -20782914 - MLT1J1 LTR MaLR -3 443 259 2139 122 0 0 chr1 221881439 221881750 -20782603 + AluSx SINE Alu 1 311 -1 833 241 41 87 chr1 221881750 221881971 -20782382 - MLT1J1 LTR MaLR -187 259 29 237 83 0 0 chr1 221882426 221882462 -20781891 + (CA)n Simple_repeat Simple_repeat 2 37 0 2367 48 3 0 chr1 221882774 221883066 -20781287 - AluY SINE Alu -16 295 3 419 245 66 9 chr1 221884056 221884162 -20780191 + MIR SINE MIR 30 141 -121 1809 161 0 25 chr1 221884183 221884500 -20779853 + AluJo SINE Alu 1 309 -3 216 97 0 0 chr1 221885142 221885173 -20779180 + (A)n Simple_repeat Simple_repeat 1 31 0 355 269 146 58 chr1 221885212 221885472 -20778881 + MLT1K LTR MaLR 209 491 -97 584 246 137 6 chr1 221885506 221885689 -20778664 + MER20B DNA MER1_type 18 224 -559 2162 192 49 20 chr1 221885721 221886210 -20778143 + MLT1D LTR MaLR 3 505 0 1007 247 122 75 chr1 221886611 221887129 -20777224 + MER20B DNA MER1_type 236 777 -6 1581 171 16 26 chr1 221887579 221887889 -20776464 - AluJb SINE Alu -5 307 1 223 336 147 9 chr1 221887898 221888014 -20776339 + L2 LINE L2 3173 3304 -9 294 289 109 0 chr1 221889281 221889409 -20774944 - MIR SINE MIR -71 191 50 1773 164 0 3 chr1 221889709 221890008 -20774345 - AluJb SINE Alu -14 298 1 2144 242 57 34 chr1 221890227 221890790 -20773563 + Zaphod DNA AcHobo 38 613 -3418 840 199 47 16 chr1 221890796 221890987 -20773366 + MER82 DNA MER2_type 7 203 -450 185 119 30 30 chr1 221890988 221891055 -20773298 + (TA)n Simple_repeat Simple_repeat 1 67 0 1073 147 16 0 chr1 221891055 221891246 -20773107 + L1MA6 LINE L1 6107 6300 0 1536 179 3 19 chr1 221891248 221891556 -20772797 + AluJo SINE Alu 1 303 -9 1937 222 32 9 chr1 221891577 221892019 -20772334 + MER82 DNA MER2_type 196 647 -6 972 176 55 47 chr1 221892025 221892117 -20772236 + Zaphod DNA AcHobo 612 702 -3329 2114 104 0 10 chr1 221892117 221892414 -20771939 - AluY SINE Alu -17 294 1 972 176 55 47 chr1 221892414 221892668 -20771685 + Zaphod DNA AcHobo 702 964 -3067 1970 105 59 0 chr1 221892668 221892954 -20771399 - AluSp SINE Alu -10 303 1 972 176 55 47 chr1 221892954 221892970 -20771383 + Zaphod DNA AcHobo 964 978 -3053 1553 210 28 64 chr1 221893013 221893228 -20771125 + Zaphod DNA AcHobo 3582 3803 -228 1339 141 144 11 chr1 221893228 221893498 -20770855 + AluSg1 SINE Alu 1 306 -3 1553 210 28 64 chr1 221893498 221893638 -20770715 + Zaphod DNA AcHobo 3803 3919 -112 2071 123 3 0 chr1 221893638 221893947 -20770406 - AluSx SINE Alu -2 310 1 1553 210 28 64 chr1 221893947 221894057 -20770296 + Zaphod DNA AcHobo 3919 4031 0 1762 121 42 3 chr1 221894702 221894991 -20769362 + AluSx SINE Alu 1 300 -12 485 300 6 35 chr1 221895039 221895209 -20769144 + MIR3 SINE MIR 35 199 -9 346 279 81 0 chr1 221895611 221895722 -20768631 + MIR SINE MIR 139 258 -4 327 282 99 53 chr1 221895703 221895834 -20768519 - L2 LINE L2 -9 3263 3127 * 456 306 83 21 chr1 221896025 221896218 -20768135 + MLT1K LTR MaLR 102 306 -282 353 222 181 53 chr1 221896280 221896314 -20768039 + MLT1K LTR MaLR 396 424 -164 261 0 0 0 chr1 221896314 221896343 -20768010 + (GA)n Simple_repeat Simple_repeat 1 29 0 353 222 181 53 chr1 221896343 221896479 -20767874 + MLT1K LTR MaLR 424 588 0 1522 157 64 15 chr1 221896651 221896943 -20767410 + AluJo SINE Alu 2 306 0 1997 113 7 19 chr1 221897000 221897310 -20767043 + AluSq SINE Alu 1 306 -7 300 286 38 8 chr1 221898259 221898392 -20765961 - L1MEc LINE L1 -6182 214 78 2138 104 0 10 chr1 221898468 221898775 -20765578 + AluSx SINE Alu 1 304 -8 910 239 49 46 chr1 221898791 221899138 -20765215 - HAL1b LINE L1 -555 793 446 1519 187 7 7 chr1 221899185 221899474 -20764879 + AluJb SINE Alu 5 293 -19 2058 117 0 10 chr1 221899698 221900007 -20764346 - AluSx SINE Alu -6 306 1 876 282 37 18 chr1 221900082 221900408 -20763945 - L1ME3A LINE L1 -299 5871 5540 829 270 36 57 chr1 221900441 221900587 -20763766 - HAL1b LINE L1 -890 458 311 1818 183 0 0 chr1 221900587 221900899 -20763454 - AluJb SINE Alu 0 312 1 829 270 36 57 chr1 221900899 221901141 -20763212 - HAL1b LINE L1 -1037 311 78 2090 136 0 0 chr1 221902134 221902444 -20761909 - AluSx SINE Alu -2 310 1 2286 135 88 18 chr1 221902498 221902898 -20761455 - MSTA LTR MaLR 0 428 1 563 264 35 29 chr1 221902923 221903097 -20761256 + L2 LINE L2 3139 3313 0 1126 205 31 28 chr1 221904324 221904612 -20759741 + AluSx SINE Alu 10 298 -14 964 213 6 0 chr1 221904615 221904779 -20759574 + AluJo/FRAM SINE Alu 137 301 -1 188 372 78 0 chr1 221905049 221905178 -20759175 - MIR SINE MIR -1 261 123 959 224 44 135 chr1 221905228 221905724 -20758629 + LTR16A1 LTR ERVL 2 452 -5 339 274 97 48 chr1 221905736 221905860 -20758493 + MIR SINE MIR 22 151 -111 451 193 18 9 chr1 221905990 221906104 -20758249 - MER112 DNA MER1_type -33 227 113 227 268 80 9 chr1 221906599 221906711 -20757642 + L1ME4a LINE L1 5943 6062 -59 527 212 24 71 chr1 221906811 221906923 -20757430 - MIR SINE MIR -48 214 111 2241 87 0 10 chr1 221906923 221907221 -20757132 + AluSp SINE Alu 1 295 -18 527 212 24 71 chr1 221907221 221907278 -20757075 - MIR SINE MIR -151 111 53 473 184 12 143 chr1 221907482 221907544 -20756809 + L2 LINE L2 3165 3233 -80 650 197 51 0 chr1 221907544 221907661 -20756692 + FLAM_A SINE Alu 1 123 -10 473 184 12 143 chr1 221907661 221907766 -20756587 + L2 LINE L2 3233 3310 -3 764 243 33 49 chr1 221908175 221908418 -20755935 - MIR SINE MIR -9 253 15 182 204 0 0 chr1 221908468 221908512 -20755841 + L2 LINE L2 3269 3312 -1 205 182 0 0 chr1 221908514 221908547 -20755806 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 2349 89 0 3 chr1 221908654 221908967 -20755386 - AluSq SINE Alu -1 312 1 209 319 43 0 chr1 221909184 221909253 -20755100 - MIR3 SINE MIR -8 200 129 2036 116 10 7 chr1 221909308 221909611 -20754742 - AluSx SINE Alu -8 304 1 819 175 0 0 chr1 221909618 221909744 -20754609 - FLAM_A SINE Alu -7 126 1 552 250 0 78 chr1 221909800 221909980 -20754373 + MIR SINE MIR 97 262 0 15596 111 17 19 chr1 221910159 221910264 -20754089 - Tigger1 DNA MER2_type 0 2418 2314 2148 92 17 0 chr1 221910264 221910557 -20753796 + AluSx SINE Alu 1 298 -14 15596 111 17 19 chr1 221910557 221911624 -20752729 - Tigger1 DNA MER2_type -104 2314 1247 2226 78 3 13 chr1 221911624 221911931 -20752422 + AluY SINE Alu 1 304 -7 15596 111 17 19 chr1 221911931 221913087 -20751266 - Tigger1 DNA MER2_type -1171 1247 92 1445 131 0 0 chr1 221913107 221913328 -20751025 + Tigger1 DNA MER2_type 749 969 -1449 2219 87 0 0 chr1 221913328 221913614 -20750739 + AluSx SINE Alu 11 296 -16 383 173 27 13 chr1 221913614 221913683 -20750670 - Tigger1 DNA MER2_type -2319 99 30 252 111 0 0 chr1 221913728 221913773 -20750580 + (GA)n Simple_repeat Simple_repeat 1 45 0 988 279 116 11 chr1 221913787 221914379 -20749974 + L2 LINE L2 2491 3190 -123 251 93 23 0 chr1 221914379 221914422 -20749931 + (CA)n Simple_repeat Simple_repeat 1 44 0 988 279 116 11 chr1 221914422 221914556 -20749797 + L2 LINE L2 3190 3309 -4 2018 121 0 7 chr1 221914586 221914883 -20749470 - AluSx SINE Alu -15 297 3 2169 128 0 0 chr1 221914919 221915231 -20749122 + AluSx SINE Alu 1 312 0 464 293 182 40 chr1 221915340 221915736 -20748617 + LTR67 LTR ERVL 99 550 -7 1712 162 0 4 chr1 221916430 221916708 -20747645 + AluJo SINE Alu 1 277 -35 27 0 0 0 chr1 221916708 221916735 -20747618 + AT_rich Low_complexity Low_complexity 1 27 0 622 266 40 6 chr1 221917114 221917291 -20747062 - MIR SINE MIR -31 231 49 2023 131 7 0 chr1 221917297 221917603 -20746750 + AluSx SINE Alu 1 308 -4 2090 98 0 3 chr1 221917680 221917976 -20746377 + AluSc SINE Alu 1 295 -14 1206 225 223 46 chr1 221918197 221918694 -20745659 + MLT1E LTR MaLR 7 591 -2 430 313 109 33 chr1 221918771 221919193 -20745160 + L2 LINE L2 2606 3050 -222 24 32 0 0 chr1 221919270 221919301 -20745052 + AT_rich Low_complexity Low_complexity 1 31 0 2165 81 3 0 chr1 221920000 221920314 -20744039 - AluSx SINE Alu 0 315 1 1636 137 8 0 chr1 221920471 221920752 -20743601 - AluJo SINE Alu 0 315 33 194 242 0 0 chr1 221922052 221922085 -20742268 - L2 LINE L2 -36 3236 3204 2301 98 0 0 chr1 221922152 221922457 -20741896 + AluSq SINE Alu 1 305 -8 2183 61 0 11 chr1 221922462 221922742 -20741611 + AluY SINE Alu 21 297 -14 1447 203 35 54 chr1 221922742 221923290 -20741063 - L1ME1 LINE L1 -4 6162 5166 1049 165 0 0 chr1 221923297 221923473 -20740880 - AluJb SINE Alu -3 309 134 2096 104 0 0 chr1 221923473 221923760 -20740593 - AluSx SINE Alu -14 298 12 306 170 0 0 chr1 221923763 221923810 -20740543 - Alu SINE Alu -256 47 1 912 139 0 7 chr1 221923813 221923957 -20740396 - FLAM_C SINE Alu 0 143 1 4293 203 61 29 chr1 221923957 221924800 -20739553 - L1ME1 LINE L1 -970 5176 4362 2096 128 9 88 chr1 221924800 221925030 -20739323 + MLT1B LTR MaLR 1 185 -205 2330 84 0 0 chr1 221925030 221925329 -20739024 + AluSg SINE Alu 1 299 -11 2096 128 9 88 chr1 221925329 221925521 -20738832 + MLT1B LTR MaLR 185 390 0 4293 203 61 29 chr1 221925521 221925733 -20738620 - L1ME1 LINE L1 -1784 4362 4077 2256 107 0 0 chr1 221925733 221926042 -20738311 - AluSx SINE Alu -3 309 1 4293 203 61 29 chr1 221926042 221926160 -20738193 - L1ME1 LINE L1 -2069 4077 3964 943 263 24 20 chr1 221926297 221926544 -20737809 + MIR SINE MIR 1 248 -14 186 272 99 25 chr1 221926681 221926762 -20737591 - L3 LINE CR1 -11 1566 1480 2044 92 0 11 chr1 221927151 221927434 -20736919 - AluSg SINE Alu -4 306 27 189 107 0 0 chr1 221928541 221928569 -20735784 + (A)n Simple_repeat Simple_repeat 1 28 0 204 203 14 72 chr1 221928606 221928675 -20735678 + CT-rich Low_complexity Low_complexity 1 65 0 180 111 0 0 chr1 221928682 221928709 -20735644 + (T)n Simple_repeat Simple_repeat 1 27 0 204 179 0 0 chr1 221930831 221930870 -20733483 + (CAG)n Simple_repeat Simple_repeat 2 40 0 2202 104 3 0 chr1 221935504 221935813 -20728540 + AluSx SINE Alu 2 311 -1 225 265 0 0 chr1 221935904 221935972 -20728381 + T-rich Low_complexity Low_complexity 1 68 0 235 258 93 21 chr1 221936402 221936499 -20727854 + MIR3 SINE MIR 104 207 -1 2127 110 0 49 chr1 221938146 221938472 -20725881 + AluSx SINE Alu 1 310 -2 212 284 0 60 chr1 221938513 221938535 -20725818 - MIR3 SINE MIR -27 181 159 2226 96 0 3 chr1 221938535 221938838 -20725515 - AluSc SINE Alu -7 302 1 212 284 0 60 chr1 221938838 221938882 -20725471 - MIR3 SINE MIR -49 159 119 280 294 59 8 chr1 221939248 221939367 -20724986 + MIR SINE MIR 132 256 -6 1633 116 13 70 chr1 221941361 221941663 -20722690 - AluJo SINE Alu -27 285 1 327 247 22 35 chr1 221941852 221941975 -20722378 + MIR SINE MIR 101 221 -41 218 217 17 50 chr1 221942585 221942645 -20721708 - L2 LINE L2 -7 3265 3208 649 244 111 0 chr1 221943372 221943552 -20720801 + MIR SINE MIR 47 246 -16 427 217 82 78 chr1 221943768 221943969 -20720384 + MIR SINE MIR 12 210 -52 2123 119 3 0 chr1 221945927 221946237 -20718116 + AluSq SINE Alu 1 311 -2 2282 74 7 3 chr1 221946245 221946542 -20717811 + AluSq SINE Alu 1 298 -15 381 233 38 136 chr1 221946562 221946661 -20717692 + L3 LINE CR1 793 900 -677 2404 69 3 16 chr1 221946661 221946978 -20717375 - AluSp SINE Alu 0 313 1 1923 118 28 0 chr1 221946982 221947270 -20717083 - AluSg SINE Alu -14 296 1 381 233 38 136 chr1 221947270 221947401 -20716952 + L3 LINE CR1 903 1005 -572 * 442 237 173 37 chr1 221947397 221947618 -20716735 - MIR SINE MIR 0 262 7 1806 119 31 14 chr1 221948753 221949046 -20715307 - AluSx SINE Alu -14 298 1 1572 154 15 59 chr1 221949067 221949404 -20714949 - L1MC/D LINE L1 -492 5750 5429 1255 165 88 42 chr1 221949415 221949700 -20714653 - AluJo SINE Alu -9 303 6 260 172 111 91 chr1 221949705 221949725 -20714628 - L1MC/D LINE L1 -919 5440 5422 2230 86 10 3 chr1 221949725 221950027 -20714326 - AluSg SINE Alu -6 304 1 260 172 111 91 chr1 221950027 221950105 -20714248 - L1MC/D LINE L1 -937 5422 5340 1227 107 53 0 chr1 221951440 221951627 -20712726 + L1PA10 LINE L1 5969 6165 -3 2099 128 0 0 chr1 221951929 221952235 -20712118 + AluSx SINE Alu 1 306 -6 247 284 74 12 chr1 221952802 221952883 -20711470 - L2 LINE L2 -50 3222 3137 334 311 66 0 chr1 221952933 221953000 -20711353 - MIR SINE MIR -149 113 35 931 151 172 0 chr1 221953000 221953186 -20711167 - MER20 DNA MER1_type -1 218 1 334 311 66 0 chr1 221953186 221953224 -20711129 - MIR SINE MIR -227 35 1 1000 208 36 11 chr1 221953605 221953950 -20710403 - MLT1I LTR MaLR 0 409 1 341 276 0 7 chr1 221954908 221955060 -20709293 + (TATG)n Simple_repeat Simple_repeat 3 153 0 254 29 29 0 chr1 221956562 221956597 -20707756 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 348 24 0 0 chr1 221956596 221956637 -20707716 + (TC)n Simple_repeat Simple_repeat 1 41 0 735 230 184 11 chr1 221956998 221957454 -20706899 + MER45 DNA AcHobo 3 628 -325 902 179 6 6 chr1 221957540 221957708 -20706645 + MER45 DNA AcHobo 1412 1579 -2 526 182 0 0 chr1 221958782 221958870 -20705483 + MER53 DNA DNA 102 189 0 762 278 130 27 chr1 221959194 221959633 -20704720 - MLT1L LTR MaLR -6 609 126 2287 84 3 3 chr1 221960543 221960858 -20703495 + AluSq SINE Alu 1 315 0 185 307 105 61 chr1 221961356 221961470 -20702883 + MIR3 SINE MIR 75 193 -15 191 245 20 0 chr1 221961604 221961653 -20702700 + MIR3 SINE MIR 153 202 -6 2432 83 3 0 chr1 221962492 221962792 -20701561 - AluSp SINE Alu -12 301 1 186 345 69 0 chr1 221964188 221964275 -20700078 - MIR SINE MIR -114 148 56 2213 106 0 7 chr1 221965625 221965926 -20698427 - AluSx SINE Alu -13 299 1 2734 39 0 0 chr1 221966408 221966716 -20697637 - AluY SINE Alu -3 308 1 295 295 114 9 chr1 221967293 221967398 -20696955 + MIR SINE MIR 2 117 -145 3201 78 2 46 chr1 221967487 221967542 -20696811 + MLT2A1 LTR ERVL 3 59 -385 2275 98 10 3 chr1 221967542 221967848 -20696505 - AluSc SINE Alu -1 308 1 3201 78 2 46 chr1 221967848 221968252 -20696101 + MLT2A1 LTR ERVL 59 442 -2 269 48 48 0 chr1 221968269 221968311 -20696042 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 801 244 26 49 chr1 221968392 221968658 -20695695 - MIR SINE MIR -1 261 2 373 294 28 9 chr1 221969786 221969895 -20694458 - L2 LINE L2 -2 3311 3201 306 290 167 25 chr1 221970710 221970872 -20693481 - MIR SINE MIR -8 254 70 214 278 67 22 chr1 221971166 221971256 -20693097 + L3 LINE CR1 1473 1566 -11 210 71 0 0 chr1 221971690 221971718 -20692635 + (CA)n Simple_repeat Simple_repeat 2 29 0 203 189 0 0 chr1 221971719 221971756 -20692597 + (TA)n Simple_repeat Simple_repeat 1 37 0 730 218 30 18 chr1 221971761 221971926 -20692427 - MIR SINE MIR -65 197 31 209 382 0 0 chr1 221972063 221972152 -20692201 + C-rich Low_complexity Low_complexity 2 90 0 499 289 115 45 chr1 221972486 221972773 -20691580 - L3 LINE CR1 -562 1015 709 2174 108 0 0 chr1 221972773 221973085 -20691268 - AluSx SINE Alu 0 316 5 341 234 65 123 chr1 221973103 221973202 -20691151 + MIR SINE MIR 20 112 -150 1141 159 63 5 chr1 221973202 221973409 -20690944 + MER20 DNA MER1_type 1 219 0 341 234 65 123 chr1 221973409 221973499 -20690854 + MIR SINE MIR 112 206 -56 688 307 172 24 chr1 221973609 221974062 -20690291 - L3 LINE CR1 -916 661 142 610 236 31 58 chr1 221974324 221974549 -20689804 - MER112 DNA MER1_type -6 254 36 307 325 219 0 chr1 221975806 221975920 -20688433 + MIR SINE MIR 2 140 -122 2795 132 26 2 chr1 221976792 221977248 -20687105 - L1MB3 LINE L1 0 6183 5717 265 328 17 17 chr1 221977570 221977689 -20686664 + MIR SINE MIR 16 134 -128 4665 78 16 2 chr1 221977784 221978402 -20685951 + L1PA13 LINE L1 5518 6144 -19 429 95 0 0 chr1 221978404 221978467 -20685886 + (CA)n Simple_repeat Simple_repeat 2 64 0 192 264 54 108 chr1 221978516 221978645 -20685708 + L2 LINE L2 3141 3262 -10 306 251 29 111 chr1 221978673 221978844 -20685509 - MARNA DNA Mariner -403 183 27 239 235 136 25 chr1 221979708 221979789 -20684564 + L2 LINE L2 3160 3249 -23 392 311 43 48 chr1 221984498 221984707 -20679646 + MIR SINE MIR 4 211 -51 450 303 87 38 chr1 221985407 221985640 -20678713 - MIR SINE MIR 0 262 3 634 194 39 50 chr1 221985760 221985940 -20678413 + MER5B DNA MER1_type 1 178 0 187 374 0 22 chr1 221986573 221986664 -20677689 + MIR SINE MIR 168 256 -6 228 182 121 15 chr1 221988255 221988321 -20676032 - L1ME4a LINE L1 -25 6096 6024 293 339 138 0 chr1 221988515 221988645 -20675708 - MIR3 SINE MIR -7 201 54 563 200 315 15 chr1 221989371 221989571 -20674782 - MIR SINE MIR 0 262 3 441 259 7 82 chr1 221991419 221991566 -20672787 - MIR SINE MIR -50 212 77 547 287 5 67 chr1 221992307 221992502 -20671851 - MIR SINE MIR -78 184 2 225 0 0 0 chr1 221992884 221992909 -20671444 + (T)n Simple_repeat Simple_repeat 1 25 0 1147 66 0 7 chr1 221993403 221993540 -20670813 + AluSq/x SINE Alu 1 136 -177 2100 115 11 0 chr1 221993540 221993826 -20670527 + AluSg SINE Alu 1 289 -21 2087 117 27 7 chr1 221994648 221994947 -20669406 - AluJb SINE Alu -7 305 1 1191 218 48 53 chr1 221995475 221995893 -20668460 - LTR56 LTR ERV1 -29 416 1 1165 263 120 40 chr1 221995917 221996587 -20667766 + L2 LINE L2 2587 3313 0 188 267 158 50 chr1 221996605 221996706 -20667647 - L2 LINE L2 -4 3268 3157 574 285 72 40 chr1 221997442 221997817 -20666536 - L1ME4a LINE L1 -245 5876 5490 261 0 0 0 chr1 221997832 221997861 -20666492 + (T)n Simple_repeat Simple_repeat 1 29 0 2014 145 3 3 chr1 221997863 221998173 -20666180 + AluSx SINE Alu 1 310 -2 398 225 22 99 chr1 221998587 221998624 -20665729 - MER97b DNA MER1_type? 0 1053 1015 2299 54 68 0 chr1 221998624 221998903 -20665450 - AluSq SINE Alu -15 298 1 398 225 22 99 chr1 221998903 221999047 -20665306 - MER97b DNA MER1_type? -38 1015 886 1907 230 78 22 chr1 221999470 222000048 -20664305 - MER97a DNA MER1_type? -277 617 8 217 254 18 166 chr1 222000103 222000272 -20664081 + L2 LINE L2 2913 3056 -216 433 302 90 62 chr1 222000724 222001314 -20663039 - L2 LINE L2 -17 3255 2654 245 325 55 55 chr1 222002539 222002702 -20661651 - MIR SINE MIR -30 232 70 387 196 131 9 chr1 222002902 222003009 -20661344 - Charlie8 DNA MER1_type -2261 156 37 1923 124 0 82 chr1 222004205 222004536 -20659817 + AluJb SINE Alu 3 306 -6 531 253 137 21 chr1 222006307 222006497 -20657856 - MIR SINE MIR -14 248 37 449 286 152 14 chr1 222006532 222006742 -20657611 + MIR SINE MIR 2 240 -22 377 202 154 0 chr1 222010276 222010380 -20653973 + MIR SINE MIR 79 198 -64 185 359 16 0 chr1 222011893 222011957 -20652396 - L2 LINE L2 -223 3049 2985 571 170 211 0 chr1 222012675 222012822 -20651531 + MER45A DNA AcHobo 1 178 0 589 167 13 31 chr1 222012900 222013130 -20651223 + CT-rich Low_complexity Low_complexity 1 225 0 254 238 75 12 chr1 222014829 222014909 -20649444 + MIR SINE MIR 86 170 -92 199 333 10 30 chr1 222016659 222016758 -20647595 - MIR SINE MIR -145 117 21 196 28 83 0 chr1 222018173 222018209 -20646144 + T-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chr1 222018225 222018249 -20646104 + AT_rich Low_complexity Low_complexity 1 24 0 664 226 0 15 chr1 222018425 222018756 -20645597 + (CA)n Simple_repeat Simple_repeat 1 325 0 201 246 0 16 chr1 222019595 222019656 -20644697 + CT-rich Low_complexity Low_complexity 2 61 0 243 327 58 0 chr1 222019747 222019851 -20644502 - L2 LINE L2 -20 3293 3184 194 365 48 19 chr1 222020419 222020523 -20643830 - MIR SINE MIR -74 134 28 265 318 8 23 chr1 222024125 222024254 -20640099 + (TG)n Simple_repeat Simple_repeat 1 127 0 809 106 14 71 chr1 222025568 222025709 -20638644 + FLAM_C SINE Alu 1 133 0 2194 123 0 0 chr1 222028679 222028981 -20635372 + AluSq SINE Alu 2 303 -10 424 259 0 48 chr1 222031001 222031190 -20633163 + (CA)n Simple_repeat Simple_repeat 1 180 0 378 0 0 0 chr1 222031241 222031283 -20633070 + (CA)n Simple_repeat Simple_repeat 1 42 0 1648 188 0 16 chr1 222032521 222032825 -20631528 + AluJo SINE Alu 12 310 -2 267 133 0 0 chr1 222032828 222032873 -20631480 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 203 179 0 0 chr1 222035495 222035534 -20628819 + T-rich Low_complexity Low_complexity 1 39 0 240 187 280 0 chr1 222036712 222036787 -20627566 - MIR SINE MIR -119 143 48 369 270 6 18 chr1 222037133 222037296 -20627057 + CT-rich Low_complexity Low_complexity 2 162 0 1768 168 13 7 chr1 222037315 222037625 -20626728 - AluJb SINE Alu 0 312 1 867 184 47 26 chr1 222039186 222039376 -20624977 + MER58A DNA MER1_type 31 224 0 532 309 48 19 chr1 222039382 222039592 -20624761 - MIR SINE MIR 0 262 47 1986 125 62 49 chr1 222039849 222040218 -20624135 + THE1C LTR MaLR 2 375 0 1296 209 73 18 chr1 222040700 222041030 -20623323 - MLT1A2 LTR MaLR 0 374 27 626 276 9 67 chr1 222041591 222041816 -20622537 - MIR SINE MIR -6 256 45 217 337 158 42 chr1 222042099 222042618 -20621735 - L2 LINE L2 -494 2820 2242 252 296 42 21 chr1 222042731 222042795 -20621558 + L1ME4a LINE L1 5971 6032 -89 1860 112 15 4 chr1 222042795 222043064 -20621289 - AluSq SINE Alu -5 308 37 252 296 42 21 chr1 222043064 222043141 -20621212 + L1ME4a LINE L1 6032 6115 -6 234 265 24 36 chr1 222043274 222043357 -20620996 + L2 LINE L2 3190 3271 -1 404 300 119 50 chr1 222043647 222043694 -20620659 + L1MC4a LINE L1 5548 5590 -2218 2322 75 3 7 chr1 222043694 222044000 -20620353 - AluSq SINE Alu -8 305 1 404 300 119 50 chr1 222044000 222044272 -20620081 + L1MC4a LINE L1 5590 5889 -1919 597 149 28 9 chr1 222044589 222044786 -20619567 + AluJ SINE Alu 44 297 -15 1480 148 19 30 chr1 222044843 222045114 -20619239 - AluJb SINE Alu -44 268 1 298 37 0 0 chr1 222045163 222045205 -20619148 + AluY SINE Alu 28 63 -237 310 183 0 0 chr1 222045635 222045706 -20618647 - L1M4 LINE L1 -2519 3627 3557 2023 174 27 31 chr1 222045713 222046191 -20618162 + L1MB8 LINE L1 4411 4886 -1260 * 3277 152 7 5 chr1 222046190 222046768 -20617585 + L1MB8 LINE L1 5496 6074 -104 3720 243 34 33 chr1 222046797 222047386 -20616967 + L1M4 LINE L1 3331 3918 -2228 2137 89 10 7 chr1 222047386 222047679 -20616674 + AluY SINE Alu 1 294 -17 3720 243 34 33 chr1 222047679 222048330 -20616023 + L1M4 LINE L1 3918 4572 -1574 1191 155 0 0 chr1 222049647 222049834 -20614519 - MLT1B LTR MaLR 0 390 204 212 75 0 25 chr1 222049835 222049875 -20614478 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1587 169 0 22 chr1 222049891 222050164 -20614189 - AluJo SINE Alu -45 267 1 719 149 0 0 chr1 222050201 222050308 -20614045 - FLAM_A SINE Alu -1 141 35 863 165 67 0 chr1 222050308 222050472 -20613881 - MLT1B LTR MaLR -215 175 1 458 294 122 9 chr1 222051118 222051332 -20613021 + MIR SINE MIR 19 256 -6 1808 147 78 9 chr1 222051413 222051732 -20612621 + MER61A LTR ERV1 1 341 -2 3028 184 56 32 chr1 222051735 222052418 -20611935 + MER61A-int LTR ERV1 2 700 -4517 271 57 0 0 chr1 222052463 222052498 -20611855 + MER61A-int LTR ERV1 1328 1362 -3855 * 6131 138 39 16 chr1 222052495 222052601 -20611752 + MER61A-int LTR ERV1 1631 1733 -3282 2329 67 0 7 chr1 222052601 222052898 -20611455 - AluSq SINE Alu -18 295 1 6131 138 39 16 chr1 222052898 222054360 -20609993 + MER61A-int LTR ERV1 1733 3996 -1019 10876 76 20 19 chr1 222054362 222055980 -20608373 + MER61A-int LTR ERV1 3326 4961 -256 2267 90 6 0 chr1 222055980 222056291 -20608062 - AluSq SINE Alu 0 313 1 10876 76 20 19 chr1 222056291 222056549 -20607804 + MER61A-int LTR ERV1 4961 5217 0 1643 128 158 7 chr1 222056549 222056846 -20607507 + MER61A LTR ERV1 1 342 -1 204 231 0 0 chr1 222057970 222058009 -20606344 - L3 LINE CR1 -483 1094 1056 245 303 176 18 chr1 222058155 222058320 -20606033 - L3 LINE CR1 -746 831 641 197 360 18 9 chr1 222062632 222062746 -20601607 + MIR SINE MIR 24 138 -124 1216 241 49 27 chr1 222064868 222065196 -20599157 + MER46C DNA MER2_type 2 336 -2 25 0 0 0 chr1 222065850 222065875 -20598478 + AT_rich Low_complexity Low_complexity 1 25 0 301 273 99 25 chr1 222066578 222066649 -20597704 + L1MC5 LINE L1 7639 7703 -258 1937 100 4 0 chr1 222066649 222066920 -20597433 + AluY SINE Alu 37 308 -3 301 273 99 25 chr1 222066920 222066969 -20597384 + L1MC5 LINE L1 7703 7768 -193 307 279 39 16 chr1 222067095 222067224 -20597129 + L1MC5 LINE L1 7785 7916 -45 878 203 40 0 chr1 222067721 222067898 -20596455 - AluJo SINE Alu -8 304 121 491 281 96 0 chr1 222068109 222068255 -20596098 + MER117 DNA MER1_type 4 163 -34 230 310 194 35 chr1 222068664 222068824 -20595529 - MARNA DNA Mariner -214 372 239 2369 131 28 14 chr1 222068824 222069183 -20595170 + THE1B LTR MaLR 1 364 0 230 310 194 35 chr1 222069183 222069254 -20595099 - MARNA DNA Mariner -347 239 104 2218 170 108 19 chr1 222072063 222072527 -20591826 - MLT1D LTR MaLR 0 505 1 2497 195 27 82 chr1 222072554 222073084 -20591269 + MLT2B3 LTR ERVL 1 498 -56 2284 90 0 3 chr1 222073084 222073383 -20590970 + AluSq SINE Alu 1 298 -15 2497 195 27 82 chr1 222073383 222073436 -20590917 + MLT2B3 LTR ERVL 498 552 -2 217 286 0 0 chr1 222073991 222074047 -20590306 + L2 LINE L2 3188 3243 -29 298 216 108 114 chr1 222074080 222074256 -20590097 + MER5A DNA MER1_type 13 187 -2 2284 91 0 0 chr1 222074836 222075133 -20589220 - AluSx SINE Alu -11 301 5 533 280 135 19 chr1 222075440 222075647 -20588706 - MIR SINE MIR -12 250 20 2091 122 0 3 chr1 222075692 222075996 -20588357 + AluSx SINE Alu 1 303 -9 275 232 0 0 chr1 222076237 222076293 -20588060 - MER116 DNA Mariner 0 80 25 247 206 82 27 chr1 222079280 222079353 -20585000 - MER5A DNA MER1_type -26 163 87 859 271 131 4 chr1 222081971 222082215 -20582138 + MLT1A2 LTR MaLR 100 374 0 450 291 57 90 chr1 222082414 222082658 -20581695 + MIR SINE MIR 2 237 -25 21 0 0 0 chr1 222083042 222083063 -20581290 + AT_rich Low_complexity Low_complexity 1 21 0 1559 246 99 30 chr1 222083549 222084082 -20580271 + MLT1G LTR MaLR 21 590 0 1284 195 105 25 chr1 222084743 222085172 -20579181 + MLT1H LTR MaLR 12 549 0 2185 96 0 7 chr1 222085424 222085725 -20578628 - AluSq SINE Alu -14 299 1 411 88 0 18 chr1 222086394 222086477 -20577876 + Alu SINE Alu 235 316 0 1043 149 5 56 chr1 222086495 222086690 -20577663 + MSTD LTR MaLR 212 396 0 699 264 148 63 chr1 222086745 222087203 -20577150 + MLT1J LTR MaLR 9 505 -6 204 280 0 0 chr1 222087212 222087262 -20577091 - L2 LINE L2 -42 3271 3222 585 299 151 18 chr1 222087518 222088016 -20576337 + L2 LINE L2 2078 2641 -673 1390 139 86 57 chr1 222088113 222088414 -20575939 + AluJo SINE Alu 1 310 -2 372 325 0 17 chr1 222088562 222088682 -20575671 + L2 LINE L2 3121 3238 -34 1979 135 10 3 chr1 222089376 222089679 -20574674 + AluJo SINE Alu 1 305 -7 411 218 0 13 chr1 222089701 222089779 -20574574 + FLAM SINE Alu 40 116 -27 28 48 0 0 chr1 222089781 222089823 -20574530 + AT_rich Low_complexity Low_complexity 1 42 0 222 105 0 0 chr1 222090497 222090535 -20573818 + (TG)n Simple_repeat Simple_repeat 1 38 0 772 250 57 28 chr1 222090821 222091033 -20573320 + MIR SINE MIR 2 219 -43 290 320 13 0 chr1 222091102 222091180 -20573173 + L2 LINE L2 3190 3268 -4 1417 109 19 0 chr1 222091273 222091483 -20572870 + L1MB3 LINE L1 5970 6183 0 333 335 165 0 chr1 222092835 222093017 -20571336 + MIR SINE MIR 4 215 -47 1891 280 29 34 chr1 222093324 222093613 -20570740 + MLT1K LTR MaLR 3 292 -296 2369 174 22 33 chr1 222093613 222093899 -20570454 + L1MA9 LINE L1 5820 6100 -212 2136 104 3 3 chr1 222093899 222094196 -20570157 + AluSx SINE Alu 1 297 -15 2369 174 22 33 chr1 222094196 222094399 -20569954 + L1MA9 LINE L1 6100 6304 -8 1891 280 29 34 chr1 222094399 222094694 -20569659 + MLT1K LTR MaLR 292 584 -4 363 259 82 34 chr1 222094705 222094852 -20569501 - MIR SINE MIR -43 219 66 634 236 68 0 chr1 222095055 222095216 -20569137 + MIR3 SINE MIR 30 201 -7 2191 113 0 3 chr1 222096094 222096405 -20567948 + AluSp SINE Alu 1 310 -3 1581 189 22 65 chr1 222096450 222096758 -20567595 + Charlie4a DNA MER1_type 38 319 -1642 1858 123 7 27 chr1 222096758 222097086 -20567267 - AluSx SINE Alu 0 312 1 1581 189 22 65 chr1 222097086 222097269 -20567084 + Charlie4a DNA MER1_type 319 508 0 266 283 72 86 chr1 222098358 222098510 -20565843 - MER5A DNA MER1_type -32 157 8 323 293 61 0 chr1 222098553 222098652 -20565701 - L2 LINE L2 -21 3251 3147 869 183 67 36 chr1 222098735 222098959 -20565394 - MIR SINE MIR 0 262 32 999 259 191 5 chr1 222102667 222103080 -20561273 - LTR33 LTR ERVL -11 510 21 2343 234 63 12 chr1 222104874 222105529 -20558824 - L1MC4 LINE L1 0 8042 7355 1340 150 61 64 chr1 222105507 222105533 -20558820 - L1MB8 LINE L1 -1 6177 6152 * 2233 118 0 19 chr1 222105533 222105846 -20558507 - AluSx SINE Alu -5 307 1 1340 150 61 64 chr1 222105846 222106146 -20558207 - L1MB8 LINE L1 -26 6152 5852 429 286 93 20 chr1 222106146 222106385 -20557968 - L1MC4 LINE L1 -656 7386 7129 420 207 96 7 chr1 222106926 222107061 -20557292 - L2 LINE L2 -190 3082 2936 1300 121 0 0 chr1 222107868 222108042 -20556311 - AluSg/x SINE Alu -5 305 132 2467 65 0 3 chr1 222108042 222108335 -20556018 - AluY SINE Alu -15 296 5 287 222 16 0 chr1 222108338 222108401 -20555952 + L1MB7 LINE L1 6111 6174 -10 3708 135 19 6 chr1 222109709 222110348 -20554005 - L1 LINE L1 -1817 4329 3683 4262 161 23 27 chr1 222110349 222111187 -20553166 + L1MA7 LINE L1 5454 6287 -4 508 259 65 7 chr1 222111301 222111440 -20552913 - MIR SINE MIR -64 144 8 407 276 79 49 chr1 222111544 222111747 -20552606 + L2 LINE L2 3036 3244 -28 1198 154 52 19 chr1 222111937 222112204 -20552149 + MER33 DNA MER1_type 49 324 0 4493 241 54 11 chr1 222112207 222113357 -20550996 - L2 LINE L2 -507 2807 1609 255 275 33 0 chr1 222113357 222113448 -20550905 - HAL1 LINE L1 -149 2358 2265 599 259 102 34 chr1 222113677 222113971 -20550382 - MLT1I LTR MaLR -2 407 94 265 163 0 0 chr1 222114239 222114288 -20550065 - HAL1 LINE L1 -354 2153 2105 464 308 131 0 chr1 222114784 222115005 -20549348 - HAL1 LINE L1 -612 1895 1646 223 281 16 0 chr1 222115010 222115074 -20549279 + MIR3 SINE MIR 117 181 -27 25 31 0 0 chr1 222115494 222115526 -20548827 + AT_rich Low_complexity Low_complexity 1 32 0 247 308 167 0 chr1 222116302 222116380 -20547973 + L2 LINE L2 3182 3272 0 251 258 206 0 chr1 222116755 222116852 -20547501 - MIR SINE MIR -20 242 126 206 61 0 30 chr1 222117069 222117102 -20547251 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 276 30 0 0 chr1 222119065 222119098 -20545255 + (CCG)n Simple_repeat Simple_repeat 1 33 0 740 123 19 0 chr1 222119709 222119815 -20544538 + AluJo SINE Alu 4 111 -201 180 0 0 0 chr1 222119843 222119863 -20544490 + (A)n Simple_repeat Simple_repeat 1 20 0 223 250 0 0 chr1 222120527 222120571 -20543782 + (CA)n Simple_repeat Simple_repeat 2 45 0 230 306 10 71 chr1 222120585 222120683 -20543670 + MIR SINE MIR 30 121 -87 194 304 174 0 chr1 222120717 222120809 -20543544 - L2 LINE L2 -5 3308 3201 1029 228 16 28 chr1 222121030 222121284 -20543069 - MIR SINE MIR -6 256 6 204 270 168 47 chr1 222121459 222121685 -20542668 - L2 LINE L2 -350 2964 2698 1732 224 74 42 chr1 222121685 222122256 -20542097 - MLT1G LTR MaLR 0 590 2 204 270 168 47 chr1 222122256 222122303 -20542050 - L2 LINE L2 -616 2698 2658 283 244 276 38 chr1 222122515 222122637 -20541716 - L2 LINE L2 -1022 2292 2200 2141 119 10 3 chr1 222122637 222122932 -20541421 + AluJb SINE Alu 1 297 -15 283 244 276 38 chr1 222122932 222123124 -20541229 - L2 LINE L2 -1114 2200 1903 446 290 45 6 chr1 222123173 222123349 -20541004 - L1M4 LINE L1 -2734 3412 3230 400 222 133 22 chr1 222123773 222123908 -20540445 + MIR SINE MIR 79 228 -34 557 259 0 7 chr1 222123982 222124129 -20540224 + MLT2F LTR ERVL 1 146 -517 417 219 10 10 chr1 222124128 222124224 -20540129 + MLT1E3 LTR MaLR 46 141 -483 * 326 142 0 160 chr1 222124149 222124227 -20540126 + MLT2C1 LTR ERVL 47 105 -292 * 1985 158 0 7 chr1 222124227 222124531 -20539822 + AluJb SINE Alu 5 306 -6 326 142 0 160 chr1 222124531 222124558 -20539795 + MLT2C1 LTR ERVL 105 135 -262 1216 173 4 40 chr1 222124565 222124790 -20539563 + AluJo SINE Alu 87 303 -9 267 153 169 3 chr1 222124790 222124865 -20539488 + MLT1E3 LTR MaLR 156 265 -389 3629 122 97 2 chr1 222125005 222125562 -20538791 + LTR66 LTR ERVL 1 610 0 3146 106 9 15 chr1 222125563 222126027 -20538326 + HERVL66 LTR ERVL 1 461 -3868 25460 133 28 18 chr1 222127569 222131901 -20532452 + HERVL66 LTR ERVL 461 4329 0 3641 103 89 23 chr1 222131901 222132422 -20531931 + LTR66 LTR ERVL 1 565 -45 2232 109 7 3 chr1 222132422 222132726 -20531627 + AluSx SINE Alu 2 306 -6 3641 103 89 23 chr1 222132726 222132776 -20531577 + LTR66 LTR ERVL 565 610 0 318 153 42 28 chr1 222132776 222132848 -20531505 + MLT2C2 LTR ERVL 344 416 -48 203 161 0 0 chr1 222132848 222132879 -20531474 + polypyrimidine Low_complexity Low_complexity 1 31 0 593 240 115 28 chr1 222133032 222133249 -20531104 - MLT1K LTR MaLR -164 424 189 217 288 54 81 chr1 222133583 222133694 -20530659 + MIR SINE MIR 29 137 -71 911 182 15 45 chr1 222134851 222135049 -20529304 - MER3 DNA MER1_type -17 192 1 277 293 188 17 chr1 222135214 222135395 -20528958 - MLT1J LTR MaLR -143 368 157 641 159 56 9 chr1 222135463 222135549 -20528804 + AluJ SINE Alu 35 128 -184 180 0 0 0 chr1 222135549 222135569 -20528784 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 641 159 56 9 chr1 222135569 222135589 -20528764 + AluJ SINE Alu 128 146 -166 1041 154 0 0 chr1 222135657 222135806 -20528547 + AluJ SINE Alu 145 293 -19 533 265 15 7 chr1 222136018 222136154 -20528199 - MIR SINE MIR -33 229 93 219 276 0 0 chr1 222137211 222137269 -20527084 + L2 LINE L2 3207 3264 -8 304 303 0 0 chr1 222137430 222137519 -20526834 + GA-rich Low_complexity Low_complexity 2 90 0 474 275 84 30 chr1 222138291 222138458 -20525895 + MIR SINE MIR 58 233 -29 1622 149 104 19 chr1 222138716 222139025 -20525328 + MER7A DNA MER2_type 14 346 0 1184 195 92 147 chr1 222139347 222140019 -20524334 + MLT1E1 LTR MaLR 20 654 0 603 310 153 0 chr1 222141257 222141499 -20522854 - L3 LINE CR1 -9 1568 1290 236 243 112 92 chr1 222141636 222141842 -20522511 + MLT1H1 LTR MaLR 96 305 -244 816 57 0 0 chr1 222141884 222141990 -20522363 - L1MA2 LINE L1 -1 6303 6198 549 242 76 25 chr1 222141995 222142193 -20522160 + MLT1H1 LTR MaLR 346 553 -2 346 301 126 58 chr1 222142825 222143028 -20521325 - L2 LINE L2 -90 3182 2945 978 271 92 51 chr1 222143028 222143515 -20520838 + MLT1J LTR MaLR 5 511 0 346 301 126 58 chr1 222143515 222143653 -20520700 - L2 LINE L2 -327 2945 2818 484 202 6 186 chr1 222144498 222144810 -20519543 + L1MC5 LINE L1 6793 7048 -913 2305 118 0 0 chr1 222145115 222145412 -20518941 - AluSx SINE Alu -15 297 1 190 211 0 26 chr1 222146038 222146114 -20518239 + GA-rich Low_complexity Low_complexity 3 76 0 2482 93 0 0 chr1 222146220 222146530 -20517823 - AluSx SINE Alu -2 310 1 280 248 99 20 chr1 222146531 222146632 -20517721 - MIR3 SINE MIR -34 174 66 245 367 115 23 chr1 222147273 222147662 -20516691 - L2 LINE L2 -2 3270 1166 464 235 10 0 chr1 222148641 222148739 -20515614 + MIR SINE MIR 41 139 -69 234 309 25 12 chr1 222148769 222148850 -20515503 + MIR SINE MIR 2 83 -179 766 161 172 11 chr1 222149377 222149563 -20514790 - L1MB8 LINE L1 -2 6176 5961 275 281 170 13 chr1 222149696 222149849 -20514504 - MIR3 SINE MIR -29 179 3 1761 168 3 18 chr1 222150037 222150323 -20514030 + AluJo SINE Alu 11 292 -20 570 230 120 28 chr1 222150563 222150781 -20513572 + MIR SINE MIR 21 262 0 302 254 146 18 chr1 222151252 222151362 -20512991 - L2 LINE L2 -7 3265 3142 1657 164 7 37 chr1 222152326 222152624 -20511729 + AluJb SINE Alu 1 289 -23 1089 311 47 10 chr1 222152628 222153009 -20511344 - L1ME3A LINE L1 -255 5915 5549 2290 92 27 0 chr1 222153009 222153301 -20511052 - AluSg SINE Alu -10 300 1 1089 311 47 10 chr1 222153301 222153471 -20510882 - L1ME3A LINE L1 -621 5549 5338 2301 112 7 0 chr1 222153471 222153776 -20510577 - AluSq SINE Alu -6 307 1 1089 311 47 10 chr1 222153776 222153825 -20510528 - L1ME3A LINE L1 -832 5338 5292 454 316 71 31 chr1 222153827 222154023 -20510330 - L1ME3A LINE L1 -860 5286 5083 352 92 46 0 chr1 222154048 222154113 -20510240 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 325 143 0 0 chr1 222154131 222154194 -20510159 - AluSp/q SINE Alu 0 303 241 189 0 0 0 chr1 222154420 222154441 -20509912 + (A)n Simple_repeat Simple_repeat 1 21 0 1879 149 16 32 chr1 222154558 222154873 -20509480 - AluJb SINE Alu 0 312 3 292 226 142 11 chr1 222155167 222155264 -20509089 + MIR SINE MIR 34 145 -63 203 363 39 10 chr1 222157571 222157673 -20506680 - MIR SINE MIR -111 151 47 1034 118 0 0 chr1 222157792 222157927 -20506426 + AluSq/x SINE Alu 1 135 -178 2112 138 0 0 chr1 222157927 222158223 -20506130 + AluY SINE Alu 1 296 -15 304 269 167 0 chr1 222158378 222158456 -20505897 + MER91A DNA MER1_type 66 156 -40 1213 209 8 0 chr1 222158564 222158798 -20505555 - AluSc SINE Alu -61 248 13 311 194 0 16 chr1 222158805 222158867 -20505486 + MER91A DNA MER1_type 130 190 0 1927 155 6 35 chr1 222158937 222159254 -20505099 + AluJo SINE Alu 1 308 -4 2570 64 0 0 chr1 222159254 222159565 -20504788 + AluY SINE Alu 1 311 0 277 265 214 0 chr1 222159897 222159995 -20504358 + L2 LINE L2 3193 3311 -2 230 182 36 0 chr1 222160232 222160287 -20504066 - L1ME4a LINE L1 -5 6116 6060 631 222 46 31 chr1 222160876 222161070 -20503283 + MER117 DNA MER1_type 1 197 0 2312 104 7 0 chr1 222161970 222162278 -20502075 - AluSq SINE Alu -3 310 1 885 118 0 7 chr1 222162684 222162820 -20501533 + Charlie4 DNA MER1_type 1827 1961 0 248 281 0 0 chr1 222162822 222162879 -20501474 + MLT1J LTR MaLR 64 120 -391 315 0 0 0 chr1 222162921 222162956 -20501397 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 409 221 107 41 chr1 222163503 222163625 -20500728 + L2 LINE L2 3173 3302 -11 1921 107 113 23 chr1 222163862 222164208 -20500145 - MER83B LTR ERV1 0 378 2 2335 75 0 0 chr1 222165201 222165509 -20498844 - AluSg SINE Alu 0 308 1 1916 134 0 10 chr1 222165601 222165893 -20498460 - AluJo SINE Alu -21 291 3 302 319 8 17 chr1 222166473 222166592 -20497761 + MER5A DNA MER1_type 9 126 -63 2266 87 0 7 chr1 222167386 222167694 -20496659 - AluSg1 SINE Alu 0 309 1 240 86 0 0 chr1 222167698 222167733 -20496620 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2271 99 0 0 chr1 222167735 222168018 -20496335 - AluSx SINE Alu -29 283 1 1024 168 11 36 chr1 222168458 222168682 -20495671 + L1M3 LINE L1 5418 5635 -548 2470 78 7 0 chr1 222168682 222168988 -20495365 - AluSq SINE Alu -5 308 1 327 255 131 28 chr1 222169387 222169532 -20494821 + MIR SINE MIR 18 177 -85 577 203 49 31 chr1 222170421 222170584 -20493769 + MIR3 SINE MIR 22 187 -21 26 64 0 0 chr1 222171280 222171327 -20493026 + GC_rich Low_complexity Low_complexity 1 47 0 342 152 76 0 chr1 222172140 222172206 -20492147 + AluS SINE Alu 227 297 -3 245 279 16 8 chr1 222172216 222172338 -20492015 - L1 LINE L1 -2367 3779 3657 268 397 74 4 chr1 222172432 222172661 -20491692 - L3 LINE CR1 -1257 320 76 1287 163 125 58 chr1 222173386 222173760 -20490593 + MLT2B1 LTR ERVL 1 381 -33 432 55 0 0 chr1 222173760 222173815 -20490538 + (CA)n Simple_repeat Simple_repeat 2 56 0 1287 163 125 58 chr1 222173815 222173852 -20490501 + MLT2B1 LTR ERVL 381 414 0 245 164 0 18 chr1 222173876 222173931 -20490422 + GA-rich Low_complexity Low_complexity 2 55 0 282 224 120 56 chr1 222174464 222174589 -20489764 - L1ME4a LINE L1 0 6121 5989 383 262 81 24 chr1 222174845 222175128 -20489225 - MLT1H LTR MaLR -175 380 28 1616 189 24 0 chr1 222175128 222175425 -20488928 + AluJo SINE Alu 7 310 -2 383 262 81 24 chr1 222175425 222175438 -20488915 - MLT1H LTR MaLR -527 28 17 312 91 0 0 chr1 222175438 222175482 -20488871 + (GGGGA)n Simple_repeat Simple_repeat 5 48 0 517 343 95 25 chr1 222175662 222176178 -20488175 + L1MC4a LINE L1 6044 6595 -1213 808 177 0 0 chr1 222176320 222176450 -20487903 + FLAM_C SINE Alu 11 140 -3 393 179 36 0 chr1 222176463 222176575 -20487778 + GA-rich Low_complexity Low_complexity 2 117 0 2532 76 0 0 chr1 222176598 222176899 -20487454 - AluY SINE Alu -9 302 2 1938 157 0 3 chr1 222176952 222177238 -20487115 + AluJo SINE Alu 11 295 -17 303 284 9 9 chr1 222177336 222177445 -20486908 + L1MC4a LINE L1 7301 7409 -399 655 243 34 23 chr1 222177445 222177622 -20486731 + MER97c DNA MER1_type? 1 179 -911 634 234 105 93 chr1 222177668 222178261 -20486092 + L1MC5 LINE L1 7313 7912 -49 189 147 0 0 chr1 222178320 222178354 -20485999 + (CAT)n Simple_repeat Simple_repeat 2 35 0 3133 73 12 0 chr1 222178714 222179122 -20485231 + MLT2A2 LTR ERVL 1 413 -40 210 183 24 12 chr1 222179135 222179217 -20485136 + (TA)n Simple_repeat Simple_repeat 1 83 0 332 146 0 0 chr1 222179219 222179274 -20485079 + MLT2A2 LTR ERVL 399 453 0 35138 63 5 11 chr1 222180730 222186355 -20477998 + L1PA5 LINE L1 564 6154 0 353 258 169 0 chr1 222187973 222188097 -20476256 + MIR3 SINE MIR 13 157 -51 344 299 257 5 chr1 222188354 222188568 -20475785 + L2 LINE L2 3046 3313 0 565 321 80 13 chr1 222190188 222190425 -20473928 - MIR SINE MIR -2 260 8 2386 119 0 0 chr1 222190472 222190782 -20473571 + AluSg SINE Alu 1 310 0 1139 130 31 0 chr1 222190805 222190997 -20473356 + LTR9B LTR ERV1 445 642 -2 278 245 51 61 chr1 222190999 222191097 -20473256 + HUERS-P3 LTR ERV1 1 97 -8822 830 143 48 20 chr1 222191099 222191246 -20473107 + HUERS-P3 LTR ERV1 409 559 -6859 3464 182 65 37 chr1 222191249 222192051 -20472302 + HUERS-P3 LTR ERV1 748 1652 -7267 351 200 0 0 chr1 222192048 222192108 -20472245 + HUERS-P3 LTR ERV1 1791 1850 -7069 * 361 241 13 0 chr1 222192689 222192768 -20471585 - FRAM SINE Alu -22 144 65 1917 160 0 37 chr1 222192816 222193141 -20471212 + AluSq SINE Alu 1 313 0 2094 77 4 0 chr1 222193141 222193413 -20470940 + HUERS-P3 LTR ERV1 5872 6144 -1274 1296 139 0 0 chr1 222193411 222193613 -20470740 + HUERS-P3 LTR ERV1 8717 8918 -1 * 3520 90 28 54 chr1 222193613 222194188 -20470165 + LTR9B LTR ERV1 1 560 -84 198 103 0 0 chr1 222194188 222194217 -20470136 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 314 292 62 12 chr1 222196201 222196362 -20467991 + L2 LINE L2 2909 3077 -195 2461 197 24 2 chr1 222196411 222196877 -20467476 - MER70B LTR ERVL -102 476 1 356 307 35 9 chr1 222196944 222197058 -20467295 + L2 LINE L2 3151 3267 -5 6168 143 14 16 chr1 222197571 222197880 -20466473 + L1MA4 LINE L1 4122 4430 -1870 2148 125 0 0 chr1 222197880 222198168 -20466185 - AluSx SINE Alu -24 288 1 6168 143 14 16 chr1 222198168 222199991 -20464362 + L1MA4 LINE L1 4430 6245 -55 978 147 11 16 chr1 222199992 222200176 -20464177 - MER61A LTR ERV1 -160 183 1 208 300 20 50 chr1 222200181 222200281 -20464072 - L2 LINE L2 0 3313 3217 1453 234 136 0 chr1 222200643 222201054 -20463299 - MLT1J LTR MaLR -8 503 37 263 225 62 12 chr1 222201339 222201419 -20462934 + MIR SINE MIR 81 164 -98 783 175 7 14 chr1 222201420 222201563 -20462790 + FLAM_C SINE Alu 2 143 0 248 162 0 0 chr1 222201570 222201607 -20462746 + MIR SINE MIR 158 194 -68 384 276 91 57 chr1 222201629 222201893 -20462460 - L1MC4 LINE L1 -1275 6767 6495 656 263 39 3 chr1 222202316 222202518 -20461835 + MIR SINE MIR 4 212 -42 396 263 73 78 chr1 222203616 222204092 -20460261 + HAL1 LINE L1 47 520 -1987 1909 268 117 25 chr1 222204308 222204673 -20459680 + HAL1 LINE L1 785 1115 -1392 2850 162 34 46 chr1 222204673 222204713 -20459640 - MLT2B3 LTR ERVL 0 554 515 189 0 0 0 chr1 222204713 222204734 -20459619 + (GA)n Simple_repeat Simple_repeat 2 22 0 2850 162 34 46 chr1 222204734 222205254 -20459099 - MLT2B3 LTR ERVL -39 515 1 1909 268 117 25 chr1 222205254 222206129 -20458224 + HAL1 LINE L1 1115 2211 -296 2604 66 0 0 chr1 222206267 222206572 -20457781 + AluY SINE Alu 1 305 -6 562 147 82 106 chr1 222206881 222206988 -20457365 + LTR45B LTR ERV1 324 429 -60 2070 99 0 0 chr1 222206988 222207307 -20457046 + AluSg SINE Alu 1 319 0 562 147 82 106 chr1 222207307 222207367 -20456986 + LTR45B LTR ERV1 429 489 0 635 223 14 0 chr1 222207367 222207515 -20456838 + HAL1 LINE L1 2225 2374 -133 1118 205 39 4 chr1 222207516 222207745 -20456608 - MLT1E LTR MaLR -1 592 356 279 125 0 36 chr1 222207747 222207803 -20456550 - MADE1 DNA Mariner -26 54 1 796 172 0 0 chr1 222207805 222207927 -20456426 - FLAM_A SINE Alu -11 122 1 478 276 167 70 chr1 222207929 222208259 -20456094 - MLT1E LTR MaLR -231 362 1 433 237 109 43 chr1 222208512 222208723 -20455630 - L1MC4 LINE L1 -1832 5976 5752 209 274 0 0 chr1 222209013 222209064 -20455289 - L2 LINE L2 0 3272 3222 1687 147 32 32 chr1 222209365 222209677 -20454676 + AluJo SINE Alu 1 312 0 537 274 14 7 chr1 222210139 222210285 -20454068 - MIR SINE MIR -63 199 53 481 288 31 19 chr1 222210386 222210546 -20453807 - L3 LINE CR1 -990 587 426 519 255 34 98 chr1 222211093 222211230 -20453123 - Charlie8 DNA MER1_type -2197 220 103 2827 184 16 37 chr1 222211230 222211796 -20452557 + MLT2B3 LTR ERVL 1 554 0 519 255 34 98 chr1 222211796 222211893 -20452460 - Charlie8 DNA MER1_type -2314 103 1 1648 170 7 3 chr1 222212295 222212583 -20451770 + AluJo SINE Alu 1 289 -23 1675 235 3 8 chr1 222213183 222213570 -20450783 - L1ME1 LINE L1 -3 6163 5779 814 262 52 5 chr1 222213577 222213787 -20450566 - MIR SINE MIR -14 248 29 1099 164 36 36 chr1 222214956 222215206 -20449147 + L1MB3 LINE L1 5413 5662 -521 660 183 71 0 chr1 222215206 222215332 -20449021 + AluJb SINE Alu 1 135 -177 2776 133 18 81 chr1 222215335 222215411 -20448942 + L1MB3 LINE L1 5654 5733 -450 1872 150 0 19 chr1 222215411 222215718 -20448635 - AluSx SINE Alu -11 301 1 2776 133 18 81 chr1 222215718 222215983 -20448370 + L1MB3 LINE L1 5733 5947 -236 2117 160 95 32 chr1 222215983 222216384 -20447969 - MSTB LTR MaLR 0 426 1 2776 133 18 81 chr1 222216384 222216607 -20447746 + L1MB3 LINE L1 5947 6183 0 646 189 17 64 chr1 222216790 222216979 -20447374 + MER104 DNA Tc2 1 177 -3 1762 121 21 44 chr1 222217016 222217355 -20446998 - L1MB8 LINE L1 0 6178 5848 256 167 0 0 chr1 222217408 222217450 -20446903 + 5S rRNA rRNA 1 42 -79 661 270 77 10 chr1 222217945 222218141 -20446212 - L2 LINE L2 -5 3308 3100 826 259 117 48 chr1 222218184 222218334 -20446019 + LTR33 LTR ERVL 21 159 -362 902 232 61 0 chr1 222218334 222218532 -20445821 + MER63A DNA MER1_type 1 210 0 826 259 117 48 chr1 222218532 222218844 -20445509 + LTR33 LTR ERVL 159 515 -6 278 381 6 22 chr1 222219642 222219823 -20444530 + (TTGGGG)n Simple_repeat Simple_repeat 3 180 0 * 389 307 0 48 chr1 222219690 222219879 -20444474 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 324 83 0 0 chr1 222219894 222219942 -20444411 + (TTAGGG)n Simple_repeat Simple_repeat 2 49 0 2012 133 7 0 chr1 222220068 222220369 -20443984 + AluSp SINE Alu 2 304 -9 3138 173 150 40 chr1 222220463 222221571 -20442782 - pTR5 LTR ERV1 -1 2437 741 2111 119 0 0 chr1 222221851 222222146 -20442207 - AluSx SINE Alu -17 295 1 884 294 9 0 chr1 222222147 222222375 -20441978 - MIR SINE MIR -31 231 2 628 261 71 50 chr1 222222396 222222445 -20441908 - MIR SINE MIR 0 262 216 958 235 14 5 chr1 222222445 222222662 -20441691 + MER20 DNA MER1_type 1 219 0 628 261 71 50 chr1 222222662 222222866 -20441487 - MIR SINE MIR -46 216 3 1261 201 77 119 chr1 222222888 222222951 -20441402 - MLT1D LTR MaLR -6 499 435 1663 132 85 0 chr1 222222951 222223223 -20441130 + AluSx SINE Alu 1 295 -17 1261 201 77 119 chr1 222223223 222223637 -20440716 - MLT1D LTR MaLR -70 435 42 375 23 0 0 chr1 222223867 222223911 -20440442 + (CA)n Simple_repeat Simple_repeat 1 44 0 249 286 119 12 chr1 222224492 222224576 -20439777 - L2 LINE L2 0 3313 3221 1974 101 14 3 chr1 222224872 222225159 -20439194 + AluSx SINE Alu 2 291 -21 1937 233 27 32 chr1 222225424 222225870 -20438483 + LTR31 LTR ERV1 75 519 -100 1940 210 74 71 chr1 222225870 222226422 -20437931 - MLT2B3 LTR ERVL 0 554 1 1937 233 27 32 chr1 222226422 222226499 -20437854 + LTR31 LTR ERV1 519 595 -24 900 161 7 0 chr1 222226962 222227111 -20437242 + FRAM SINE Alu 1 146 -30 2284 178 57 20 chr1 222227136 222227626 -20436727 + LTR54 LTR ERV1 3 510 0 1516 133 126 35 chr1 222228696 222228982 -20435371 + AluJb SINE Alu 1 312 0 2012 135 3 0 chr1 222229715 222230019 -20434334 + AluSx SINE Alu 1 305 -7 359 248 19 136 chr1 222230366 222230580 -20433773 + MIR SINE MIR 66 254 -8 1089 70 0 0 chr1 222230604 222230747 -20433606 + L1MA5 LINE L1 6152 6294 -6 297 132 75 0 chr1 222230764 222230817 -20433536 + L1M4 LINE L1 5725 5781 -403 204 139 0 28 chr1 222231448 222231484 -20432869 + (CA)n Simple_repeat Simple_repeat 1 35 0 1452 192 20 3 chr1 222233428 222233720 -20430633 + AluJo SINE Alu 13 309 -3 3138 119 10 3 chr1 222234728 222235405 -20428948 - MER72 LTR ERV1 0 722 9 483 296 59 44 chr1 222235737 222235940 -20428413 + MLT1K LTR MaLR 144 349 -239 1782 134 50 17 chr1 222236471 222236770 -20427583 + AluJb SINE Alu 1 309 -3 2935 103 166 36 chr1 222237421 222237454 -20426899 - LTR24C LTR ERV1 0 635 608 1229 192 111 0 chr1 222237454 222237725 -20426628 - AluJo SINE Alu -11 301 1 2935 103 166 36 chr1 222237725 222237993 -20426360 - LTR24C LTR ERV1 -27 608 376 2095 114 0 3 chr1 222237993 222238290 -20426063 + AluSx SINE Alu 11 306 -6 2935 103 166 36 chr1 222238290 222238480 -20425873 - LTR24C LTR ERV1 -259 376 212 1660 141 35 3 chr1 222238480 222238764 -20425589 - AluSx SINE Alu -19 293 1 2935 103 166 36 chr1 222238764 222238832 -20425521 - LTR24C LTR ERV1 -423 212 1 331 282 0 0 chr1 222238870 222238955 -20425398 + MLT1L LTR MaLR 3 87 -528 5088 154 25 33 chr1 222239004 222239619 -20424734 - MER49 LTR ERV1 0 923 316 908 126 4 169 chr1 222239619 222239850 -20424503 - 7SK RNA RNA 0 193 1 5088 154 25 33 chr1 222239850 222240155 -20424198 - MER49 LTR ERV1 -607 316 10 2348 142 146 38 chr1 222240348 222240867 -20423486 + LTR49 LTR ERV1 1 622 0 888 170 0 6 chr1 222241584 222241743 -20422610 + AluJb SINE Alu 147 304 -8 639 155 155 9 chr1 222242216 222242332 -20422021 + FLAM_C SINE Alu 1 133 0 781 177 0 8 chr1 222242648 222242778 -20421575 + FLAM_C SINE Alu 1 129 -4 30 34 0 34 chr1 222242829 222242869 -20421484 + AT_rich Low_complexity Low_complexity 1 40 -17 308 94 19 0 chr1 222242869 222242922 -20421431 - L1MA5A LINE L1 -4 6293 6240 30 34 0 34 chr1 222242922 222242940 -20421413 + AT_rich Low_complexity Low_complexity 40 57 0 29 28 0 0 chr1 222242966 222243002 -20421351 + AT_rich Low_complexity Low_complexity 1 36 0 348 295 110 18 chr1 222243126 222243410 -20420943 + L1MC/D LINE L1 4466 4788 -1358 2024 121 0 0 chr1 222243410 222243714 -20420639 + AluSx SINE Alu 1 304 0 348 295 110 18 chr1 222243714 222243764 -20420589 + L1MC/D LINE L1 4788 4832 -1314 2161 106 3 3 chr1 222244123 222244435 -20419918 + AluSx SINE Alu 1 312 0 742 260 32 15 chr1 222244485 222244873 -20419480 + L1MC/D LINE L1 5039 5439 -743 1865 218 16 38 chr1 222244875 222244975 -20419378 + L1ME LINE L1 5267 5368 -796 1649 165 21 14 chr1 222244975 222245282 -20419071 + AluJo SINE Alu 1 309 0 1865 218 16 38 chr1 222245282 222245678 -20418675 + L1ME LINE L1 5368 5755 -409 1128 162 0 0 chr1 222245691 222245882 -20418471 + AluSg/x SINE Alu 118 308 -2 300 311 62 10 chr1 222245993 222246186 -20418167 + L1MC4a LINE L1 4457 4659 -1487 * 863 128 98 59 chr1 222246185 222246389 -20417964 + L1ME2 LINE L1 5743 5954 -210 626 231 149 41 chr1 222247260 222247455 -20416898 + L1ME2 LINE L1 5940 6155 -9 1845 244 72 20 chr1 222247465 222248010 -20416343 + L1MC4a LINE L1 5423 5995 -1813 186 167 0 0 chr1 222248265 222248301 -20416052 + A-rich Low_complexity Low_complexity 1 36 0 239 211 127 0 chr1 222248346 222248417 -20415936 - HAL1b LINE L1 -48 1300 1221 262 258 134 0 chr1 222249144 222249241 -20415112 + MLT1L LTR MaLR 412 521 -94 1353 132 0 38 chr1 222249246 222249481 -20414872 - AluJo SINE Alu 0 312 87 435 324 47 7 chr1 222249866 222250014 -20414339 + MIR SINE MIR 20 173 -89 250 287 103 0 chr1 222250023 222250110 -20414243 - L2 LINE L2 0 3313 3218 734 247 202 34 chr1 222250191 222250567 -20413786 - MER45C DNA AcHobo -326 627 316 1317 165 56 49 chr1 222250567 222250852 -20413501 + AluJb SINE Alu 1 287 -25 734 247 202 34 chr1 222250852 222250961 -20413392 - MER45C DNA AcHobo -637 316 2 452 252 67 0 chr1 222251120 222251239 -20413114 + MER5A DNA MER1_type 58 184 -5 858 176 7 46 chr1 222251240 222251393 -20412960 + AluJb SINE Alu 136 282 -30 582 132 0 88 chr1 222251395 222251509 -20412844 - FRAM SINE Alu 0 176 73 27 49 0 0 chr1 222253239 222253280 -20411073 + AT_rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr1 222253297 222253321 -20411032 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6377 85 15 6 chr1 222253324 222254202 -20410151 - L1PA5 LINE L1 -13 6141 5256 26 0 0 0 chr1 222254300 222254326 -20410027 + AT_rich Low_complexity Low_complexity 1 26 0 1487 151 32 64 chr1 222254326 222254637 -20409716 + AluJb SINE Alu 1 301 -11 1178 183 14 0 chr1 222254711 222254919 -20409434 - L1PB4 LINE L1 -18 6138 5928 1216 92 6 6 chr1 222254935 222255108 -20409245 - AluSq SINE Alu -15 298 126 261 103 0 0 chr1 222256032 222256071 -20408282 - AluJo SINE Alu -12 290 252 1263 126 5 0 chr1 222256071 222256262 -20408091 - AluJo SINE Alu -92 220 29 652 195 143 7 chr1 222256887 222257041 -20407312 + MER5B DNA MER1_type 2 176 -2 216 86 0 29 chr1 222257646 222257681 -20406672 - L2 LINE L2 -225 3047 3014 2369 97 3 0 chr1 222257681 222257981 -20406372 - AluSx SINE Alu -11 301 1 214 274 0 32 chr1 222258167 222258229 -20406124 + L2 LINE L2 3254 3313 0 886 133 0 109 chr1 222258762 222258927 -20405426 + 7SLRNA srpRNA srpRNA 1 147 -173 4387 140 104 22 chr1 222258927 222260203 -20404150 + pTR5 LTR ERV1 743 2438 0 1007 183 0 6 chr1 222260206 222260381 -20403972 + 7SLRNA srpRNA srpRNA 144 317 -3 192 293 134 37 chr1 222260394 222260476 -20403877 - MER5B DNA MER1_type -29 149 60 210 202 95 48 chr1 222260480 222260564 -20403789 + MIR SINE MIR 175 262 0 * 251 246 223 31 chr1 222260561 222260691 -20403662 - L2 LINE L2 0 3313 3159 382 279 142 5 chr1 222260724 222260914 -20403439 + L2 LINE L2 2489 2704 -610 1412 160 57 70 chr1 222261512 222261684 -20402669 - AluJo SINE Alu -16 296 128 1775 164 0 33 chr1 222261684 222261988 -20402365 + AluJb SINE Alu 1 294 -18 1412 160 57 70 chr1 222261988 222262115 -20402238 - AluJo SINE Alu -184 128 1 666 268 45 27 chr1 222262434 222262654 -20401699 - MIR SINE MIR -2 260 37 1954 151 0 26 chr1 222263249 222263561 -20400792 + AluJb SINE Alu 1 304 -8 839 290 20 24 chr1 222263803 222264144 -20400209 - L1ME3A LINE L1 -202 5968 5629 305 345 50 0 chr1 222264241 222264360 -20399993 - L2 LINE L2 -2 3270 3146 772 147 20 20 chr1 222264364 222264514 -20399839 + MLT1A1 LTR MaLR 5 154 -211 614 150 0 20 chr1 222264515 222264615 -20399738 + AluJo SINE Alu 33 130 -182 1188 127 32 0 chr1 222264623 222264812 -20399541 + MLT1A1 LTR MaLR 171 365 0 960 171 12 6 chr1 222265361 222265525 -20398828 + AluJo SINE Alu 137 301 -1 335 218 0 77 chr1 222266578 222266656 -20397697 - L2 LINE L2 0 3272 3201 2310 98 7 7 chr1 222266978 222267283 -20397070 + AluSq SINE Alu 1 305 -8 304 246 43 80 chr1 222267980 222268118 -20396235 + L1ME3A LINE L1 5299 5431 -731 1422 149 114 16 chr1 222268124 222268379 -20395974 + AluJo SINE Alu 11 290 -22 1696 200 3 3 chr1 222268496 222268791 -20395562 + AluJo SINE Alu 3 297 -15 1581 290 100 7 chr1 222268800 222269418 -20394935 + L1ME3A LINE L1 5484 6159 -11 1598 148 100 11 chr1 222269445 222269716 -20394637 + AluJb SINE Alu 1 295 -17 1105 117 0 13 chr1 222269719 222269900 -20394453 + AluSg/x SINE Alu 135 310 0 475 301 40 0 chr1 222269994 222270170 -20394183 + L1ME LINE L1 5533 5715 -406 2483 91 0 0 chr1 222270175 222270483 -20393870 - AluSx SINE Alu -4 308 1 1336 225 34 6 chr1 222270709 222271029 -20393324 - LTR53 LTR ERVL -2 517 189 264 206 52 31 chr1 222272566 222272663 -20391690 + MLT1J1 LTR MaLR 1 99 -347 2205 113 0 7 chr1 222272798 222273091 -20391262 - AluSg SINE Alu -9 301 11 1144 197 123 4 chr1 222273142 222273411 -20390942 + L1M4 LINE L1 4677 4977 -1169 300 155 52 0 chr1 222273433 222273491 -20390862 - FLAM SINE Alu 0 133 73 620 145 137 8 chr1 222274546 222274663 -20389690 - L2 LINE L2 -2 3311 3180 454 263 267 4 chr1 222274645 222274907 -20389446 - L2 LINE L2 -702 2612 2282 * 256 155 141 56 chr1 222274931 222275002 -20389351 - Charlie4 DNA MER1_type 0 1961 1885 2294 105 7 0 chr1 222275357 222275652 -20388701 - AluSx SINE Alu -15 297 1 1918 140 39 0 chr1 222276037 222276322 -20388031 - AluJb SINE Alu -16 296 1 812 126 0 17 chr1 222276626 222276745 -20387608 + FLAM_C SINE Alu 1 117 -26 279 0 0 0 chr1 222276751 222276782 -20387571 + (CA)n Simple_repeat Simple_repeat 2 32 0 859 198 21 0 chr1 222276792 222276984 -20387369 - Charlie4 DNA MER1_type -1673 288 93 1456 154 57 14 chr1 222277157 222277437 -20386916 + AluJo SINE Alu 1 292 -20 38 22 0 0 chr1 222277608 222277653 -20386700 + GC_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr1 222277988 222278021 -20386332 + GC_rich Low_complexity Low_complexity 1 33 0 206 346 25 0 chr1 222279322 222279403 -20384950 - L2 LINE L2 -470 2844 2762 1207 223 69 44 chr1 222279441 222279826 -20384527 + Charlie4a DNA MER1_type 1 400 -1561 888 145 0 0 chr1 222279826 222279957 -20384396 - FLAM_C SINE Alu -2 131 1 1207 223 69 44 chr1 222279957 222280007 -20384346 + Charlie4a DNA MER1_type 400 447 -61 1771 134 3 49 chr1 222280185 222280491 -20383862 + AluJb SINE Alu 1 292 -20 2006 108 47 4 chr1 222282315 222282592 -20381761 + AluSg SINE Alu 1 289 -21 1276 156 129 4 chr1 222283816 222284079 -20380274 - L1MC1 LINE L1 -1 6332 6037 440 111 0 0 chr1 222284079 222284142 -20380211 + MER66B-int LTR ERV1 6614 6676 0 2378 173 24 7 chr1 222284149 222284601 -20379752 + MER66B LTR ERV1 27 486 0 380 126 218 0 chr1 222284601 222284688 -20379665 - L1MC1 LINE L1 -291 6042 5937 312 267 0 111 chr1 222285318 222285453 -20378900 - L1 LINE L1 -1109 5037 4918 1090 126 50 6 chr1 222285466 222285648 -20378705 - AluY SINE Alu -2 309 120 714 152 0 0 chr1 222285773 222285885 -20378468 - AluY SINE Alu -13 298 187 828 129 39 62 chr1 222285889 222286067 -20378286 - L1MC1 LINE L1 -8 6325 6152 4551 156 19 21 chr1 222286068 222286422 -20377931 - L1MC1 LINE L1 -132 6201 5848 2285 95 10 0 chr1 222286422 222286717 -20377636 + AluSg SINE Alu 1 298 -12 4551 156 19 21 chr1 222286717 222287228 -20377125 - L1MC1 LINE L1 -485 5848 5338 1335 140 70 9 chr1 222287246 222287460 -20376893 - AluJb SINE Alu -15 297 71 2094 213 73 32 chr1 222287461 222288063 -20376290 - L1MC1 LINE L1 -816 5330 4704 1281 155 103 0 chr1 222288063 222288315 -20376038 - MSTA LTR MaLR -150 278 1 1013 182 50 146 chr1 222288483 222288785 -20375568 - AluJo SINE Alu -39 273 1 841 140 240 0 chr1 222288908 222289058 -20375295 - AluSg/x SINE Alu -44 265 80 2983 166 34 113 chr1 222289372 222289421 -20374932 - L1MB3 LINE L1 0 6183 6132 2331 93 0 29 chr1 222289421 222289731 -20374622 - AluSx SINE Alu -11 301 1 2983 166 34 113 chr1 222289731 222290133 -20374220 - L1MB3 LINE L1 -51 6132 5829 1552 124 9 9 chr1 222290133 222290350 -20374003 - AluSg/x SINE Alu -11 299 83 2983 166 34 113 chr1 222290350 222290754 -20373599 - L1MB3 LINE L1 -354 5829 5395 545 254 181 0 chr1 222290826 222291003 -20373350 - MIR SINE MIR -12 250 42 896 182 38 13 chr1 222291003 222291162 -20373191 - AluJb SINE Alu -13 299 137 502 181 74 27 chr1 222291255 222291404 -20372949 - L1ME LINE L1 -459 5662 5507 1561 158 16 65 chr1 222291424 222291734 -20372619 - AluJo SINE Alu -17 295 1 319 329 29 41 chr1 222291761 222291931 -20372422 - L1MB3 LINE L1 -885 5261 5094 1448 228 61 12 chr1 222291943 222292372 -20371981 - L1ME2 LINE L1 -17 6147 5698 * 1553 248 74 17 chr1 222292351 222292892 -20371461 - L1MC1 LINE L1 -1523 4623 4052 270 230 100 10 chr1 222292898 222292998 -20371355 - L1P LINE L1 -1155 4991 4883 1170 164 187 0 chr1 222294573 222294792 -20369561 + AluJo SINE Alu 40 299 -13 446 340 0 0 chr1 222296219 222296360 -20367993 - MIR SINE MIR -1 261 121 360 209 29 67 chr1 222298306 222298411 -20365942 - MIR SINE MIR -70 192 92 210 281 70 62 chr1 222298433 222298508 -20365845 + MIR SINE MIR 124 202 -60 2272 118 0 7 chr1 222298508 222298805 -20365548 + AluSx SINE Alu 1 295 -17 210 281 70 62 chr1 222298805 222298857 -20365496 + MIR SINE MIR 202 252 -10 360 267 23 12 chr1 222300541 222300627 -20363726 - L2 LINE L2 -18 3295 3209 1586 188 35 3 chr1 222302972 222303260 -20361093 + AluJo SINE Alu 1 297 -15 1056 194 102 14 chr1 222304950 222305166 -20359187 + MER46A DNA MER2_type 2 236 0 362 232 127 21 chr1 222305223 222305365 -20358988 + MER103 DNA DNA 1 157 -9 1809 153 53 0 chr1 222306942 222307224 -20357129 - AluJb SINE Alu -15 297 1 1247 205 82 51 chr1 222308744 222309158 -20355195 + L1M4 LINE L1 3514 3940 -2206 976 192 39 24 chr1 222309987 222310242 -20354111 - Charlie5 DNA MER1_type -27 2585 2327 399 308 123 50 chr1 222310277 222310537 -20353816 - L1ME4a LINE L1 -290 5831 5553 217 312 78 13 chr1 222310700 222310777 -20353576 - L2 LINE L2 -40 3232 3151 767 164 0 30 chr1 222311817 222311951 -20352402 - AluJb SINE Alu -181 131 2 2063 121 3 20 chr1 222313068 222313089 -20351264 - AluSx SINE Alu -11 301 281 225 0 0 0 chr1 222313089 222313114 -20351239 + (GTTTG)n Simple_repeat Simple_repeat 1 25 0 2063 121 3 20 chr1 222313114 222313398 -20350955 - AluSx SINE Alu -31 281 1 316 267 146 24 chr1 222313971 222314177 -20350176 + MARNA DNA Mariner 43 273 -313 231 309 53 32 chr1 222314404 222314498 -20349855 - L2 LINE L2 -35 3237 3142 680 197 16 93 chr1 222315638 222315794 -20348559 + MER8 DNA MER2_type 2 142 -97 2180 122 3 28 chr1 222315794 222316114 -20348239 - AluSx SINE Alu 0 312 1 680 197 16 93 chr1 222316114 222316150 -20348203 + MER8 DNA MER2_type 142 179 -60 252 308 0 0 chr1 222316124 222316189 -20348164 + MER2 DNA MER2_type 281 345 0 * 370 157 43 0 chr1 222316189 222316257 -20348096 - Tigger2 DNA MER2_type -2647 71 1 329 260 58 0 chr1 222317079 222317183 -20347170 - L1MC4 LINE L1 -1 8041 7932 369 196 421 0 chr1 222318356 222318489 -20345864 - MER5A DNA MER1_type 0 189 1 207 0 0 0 chr1 222318596 222318619 -20345734 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 261 315 102 0 chr1 222319470 222319578 -20344775 - MIR3 SINE MIR -2 206 88 2115 125 0 0 chr1 222319990 222320279 -20344074 - AluSx SINE Alu 0 312 24 389 337 171 0 chr1 222321359 222321552 -20342801 - MIR SINE MIR 0 262 37 28 29 0 0 chr1 222322901 222322936 -20341417 + AT_rich Low_complexity Low_complexity 1 35 0 1926 95 15 8 chr1 222323343 222323606 -20340747 + AluSx SINE Alu 43 307 -5 609 123 0 0 chr1 222325492 222325573 -20338780 + AluJ/FLAM SINE Alu 9 89 -223 1850 127 55 4 chr1 222325896 222326171 -20338182 + AluSc SINE Alu 1 289 -20 772 60 10 0 chr1 222326234 222326334 -20338019 + AluY SINE Alu 198 298 -13 505 272 58 29 chr1 222327433 222327606 -20336747 + ERVL LTR ERVL 4466 4643 -1121 1273 273 61 36 chr1 222327801 222328278 -20336075 + ERVL LTR ERVL 4888 5376 -388 2057 103 0 78 chr1 222328324 222328655 -20335698 - AluSx SINE Alu -7 305 1 319 327 9 0 chr1 222329018 222329125 -20335228 + MIR SINE MIR 155 262 0 1349 183 20 43 chr1 222330362 222330662 -20333691 + AluJo SINE Alu 1 293 -19 1958 134 0 21 chr1 222330662 222330952 -20333401 + AluSx SINE Alu 1 284 -28 29 0 0 0 chr1 222330952 222330981 -20333372 + AT_rich Low_complexity Low_complexity 1 29 0 254 309 147 34 chr1 222330989 222331193 -20333160 - MLT1L LTR MaLR -192 423 197 182 220 20 40 chr1 222331405 222331455 -20332898 + MIR3 SINE MIR 157 205 -3 1874 148 10 14 chr1 222332994 222333291 -20331062 - AluJb SINE Alu -16 296 1 452 159 149 0 chr1 222333318 222333425 -20330928 - MIR SINE MIR -59 203 81 490 149 170 0 chr1 222334065 222334159 -20330194 - FLAM_C SINE Alu -32 111 2 2363 100 3 0 chr1 222334164 222334464 -20329889 - AluSx SINE Alu -11 301 1 518 81 0 27 chr1 222334584 222334658 -20329695 + AluSq/x SINE Alu 72 143 -169 180 0 0 0 chr1 222334704 222334724 -20329629 + (TA)n Simple_repeat Simple_repeat 2 21 0 1408 168 40 67 chr1 222335808 222335954 -20328399 + AluJo SINE Alu 2 137 -175 2221 110 0 3 chr1 222335954 222336254 -20328099 + AluSx SINE Alu 1 299 -13 1408 168 40 67 chr1 222336254 222336405 -20327948 + AluJo SINE Alu 137 291 -21 251 164 49 16 chr1 222337745 222337806 -20326547 + MLT1F1 LTR MaLR 3 65 -502 236 262 16 0 chr1 222337845 222337906 -20326447 + MLT1F LTR MaLR 54 115 -452 306 0 0 0 chr1 222337933 222337967 -20326386 + (TA)n Simple_repeat Simple_repeat 2 35 0 730 182 0 28 chr1 222337983 222338126 -20326227 - FLAM_C SINE Alu 0 143 5 2233 83 45 3 chr1 222338134 222338423 -20325930 - AluSx SINE Alu -11 301 1 378 185 27 10 chr1 222338424 222338559 -20325794 + MLT1F LTR MaLR 183 364 -178 982 171 22 11 chr1 222338569 222338750 -20325603 - MER20 DNA MER1_type -21 198 16 721 159 178 6 chr1 222338774 222338931 -20325422 + MLT1F LTR MaLR 359 542 0 2298 116 3 3 chr1 222338983 222339293 -20325060 - AluSx SINE Alu -1 311 2 253 329 158 13 chr1 222339316 222339468 -20324885 - L3 LINE CR1 -15 1562 1389 2237 96 36 0 chr1 222339510 222339811 -20324542 - AluSq SINE Alu -1 312 1 2105 140 0 3 chr1 222339947 222340254 -20324099 - AluSx SINE Alu -1 311 6 2389 113 11 6 chr1 222340498 222340851 -20323502 - THE1A LTR MaLR 0 355 1 36 23 0 0 chr1 222341325 222341368 -20322985 + AT_rich Low_complexity Low_complexity 1 43 0 2152 112 14 7 chr1 222341374 222341668 -20322685 + AluSx SINE Alu 1 296 -16 1444 185 34 48 chr1 222341719 222341838 -20322515 + AluJb SINE Alu 1 120 -192 189 0 0 0 chr1 222341838 222341859 -20322494 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1444 185 34 48 chr1 222341859 222342031 -20322322 + AluJb SINE Alu 120 288 -24 486 299 75 7 chr1 222342281 222342428 -20321925 + MER91A DNA MER1_type 4 160 -36 550 169 6 139 chr1 222342668 222342759 -20321594 + MER5B DNA MER1_type 8 109 -69 1983 139 60 26 chr1 222342759 222343111 -20321242 - THE1B LTR MaLR 0 364 1 11892 85 8 22 chr1 222343111 222343190 -20321163 - THE1B-int LTR MaLR 0 1580 1501 2313 99 0 3 chr1 222343190 222343484 -20320869 - AluY SINE Alu -18 293 1 11892 85 8 22 chr1 222343484 222343730 -20320623 - THE1B-int LTR MaLR -79 1501 1253 2304 102 3 0 chr1 222343730 222344025 -20320328 - AluSg SINE Alu -13 297 2 11892 85 8 22 chr1 222344025 222345300 -20319053 - THE1B-int LTR MaLR -327 1253 1 2330 110 48 22 chr1 222345300 222345655 -20318698 - THE1B LTR MaLR 0 364 1 550 169 6 139 chr1 222345655 222345727 -20318626 + MER5B DNA MER1_type 106 151 -27 278 203 16 16 chr1 222345763 222345827 -20318526 + MLT1L LTR MaLR 146 209 -406 1376 177 0 48 chr1 222345827 222346075 -20318278 + AluJb SINE Alu 1 236 -76 500 132 13 0 chr1 222346407 222346483 -20317870 + AluJo SINE Alu 59 135 -177 1859 143 43 7 chr1 222346483 222346783 -20317570 + AluJb SINE Alu 1 311 -1 2056 117 46 0 chr1 222346787 222347070 -20317283 + AluSx SINE Alu 1 296 -16 2426 81 3 0 chr1 222347071 222347368 -20316985 + AluSg SINE Alu 1 298 -12 473 288 113 11 chr1 222348373 222348550 -20315803 + MIR SINE MIR 67 261 -1 1051 190 9 19 chr1 222348557 222348768 -20315585 - MLT1A1 LTR MaLR -1 364 156 1549 187 44 0 chr1 222348784 222349116 -20315237 - AluJb SINE Alu 0 344 1 750 330 40 38 chr1 222349464 222350067 -20314286 + L1MEc LINE L1 35 638 -5758 807 201 29 35 chr1 222350068 222350186 -20314167 + MER20 DNA MER1_type 1 119 -100 1582 166 172 10 chr1 222350186 222350500 -20313853 - MLT1A1 LTR MaLR 0 365 1 807 201 29 35 chr1 222350500 222350555 -20313798 + MER20 DNA MER1_type 119 173 -46 2383 101 0 19 chr1 222350664 222350981 -20313372 + AluSx SINE Alu 1 311 -1 245 206 48 0 chr1 222350981 222351044 -20313309 + L1MEc LINE L1 1647 1712 -4684 308 93 0 0 chr1 222351049 222351092 -20313261 + AluJo SINE Alu 1 43 -258 979 120 23 0 chr1 222351119 222351252 -20313101 - AluSq/x SINE Alu -177 136 1 1365 182 4 12 chr1 222351253 222351495 -20312858 + AluJo SINE Alu 28 267 -45 566 246 54 25 chr1 222351495 222351533 -20312820 + L1MEc LINE L1 1751 1786 -4610 2596 65 0 0 chr1 222351533 222351839 -20312514 + AluY SINE Alu 1 306 -5 566 246 54 25 chr1 222351839 222352076 -20312277 + L1MEc LINE L1 1786 2034 -4362 432 206 93 19 chr1 222352614 222352721 -20311632 - AluJb SINE Alu 0 312 198 219 36 0 0 chr1 222352724 222352752 -20311601 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1866 170 3 20 chr1 222352899 222353205 -20311148 + AluJb SINE Alu 2 302 -10 992 157 29 0 chr1 222353786 222353958 -20310395 - AluSg/x SINE Alu -2 308 132 2138 133 3 0 chr1 222353958 222354252 -20310101 - AluSx SINE Alu -16 296 2 2054 108 21 7 chr1 222354311 222354597 -20309756 + AluSc SINE Alu 1 290 -19 2359 98 3 0 chr1 222354669 222354976 -20309377 + AluSp SINE Alu 1 308 -5 1406 116 4 36 chr1 222354984 222355209 -20309144 + AluSg/x SINE Alu 87 304 -8 377 185 51 115 chr1 222355210 222355314 -20309039 + L1MEc LINE L1 2750 2842 -3373 1946 155 7 7 chr1 222355314 222355624 -20308729 - AluSx SINE Alu -2 310 1 377 185 51 115 chr1 222355624 222355676 -20308677 + L1MEc LINE L1 2842 2896 -3319 * 2212 203 37 98 chr1 222355670 222356009 -20308344 + L1ME2 LINE L1 5442 5800 -534 2232 111 0 0 chr1 222356009 222356298 -20308055 + AluSq SINE Alu 1 289 -24 2212 203 37 98 chr1 222356298 222356462 -20307891 + L1ME2 LINE L1 5800 5973 -361 213 39 0 0 chr1 222356462 222356488 -20307865 + (TG)n Simple_repeat Simple_repeat 2 27 0 2212 203 37 98 chr1 222356488 222356766 -20307587 + L1ME2 LINE L1 5973 6334 0 2424 57 17 0 chr1 222356828 222357125 -20307228 - AluY SINE Alu -9 302 1 2297 122 0 0 chr1 222357285 222357597 -20306756 - AluSx SINE Alu 0 312 1 4942 118 39 23 chr1 222357646 222358248 -20306105 + LTR39 LTR ERV1 1 619 -164 1738 155 3 78 chr1 222358248 222358570 -20305783 + AluJo SINE Alu 1 298 -14 4942 118 39 23 chr1 222358570 222358738 -20305615 + LTR39 LTR ERV1 619 783 0 260 269 21 32 chr1 222359120 222359213 -20305140 - LTR16B LTR ERVL -7 457 366 225 0 0 0 chr1 222359320 222359345 -20305008 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2008 124 4 0 chr1 222359349 222359624 -20304729 - AluSx SINE Alu -36 276 1 468 279 70 13 chr1 222360077 222360235 -20304118 - LTR16B LTR ERVL -237 227 61 2846 171 18 22 chr1 222360249 222360777 -20303576 + MLT2B3 LTR ERVL 1 413 -40 267 104 0 0 chr1 222360777 222360825 -20303528 + (TATG)n Simple_repeat Simple_repeat 2 49 0 270 190 0 0 chr1 222360828 222360886 -20303467 + MLT2B3 LTR ERVL 458 515 -5 276 304 64 49 chr1 222360958 222361162 -20303191 + L2 LINE L2 2818 3024 -248 1244 234 56 56 chr1 222361207 222361549 -20302804 + MER39 LTR ERV1 7 348 -359 2001 138 20 0 chr1 222361549 222361845 -20302508 - AluSx SINE Alu -10 302 1 1244 234 56 56 chr1 222361845 222361990 -20302363 + MER39 LTR ERV1 348 707 0 215 285 153 62 chr1 222362055 222362199 -20302154 + L2 LINE L2 3116 3272 0 1331 157 42 0 chr1 222362273 222362490 -20301863 - AluJb SINE Alu 0 312 87 1410 152 47 16 chr1 222362703 222362991 -20301362 + AluJb SINE Alu 21 316 0 652 158 12 85 chr1 222363119 222363199 -20301154 - L1MB7 LINE L1 -9 6175 6091 1637 130 25 76 chr1 222363199 222363378 -20300975 - MER44D DNA MER2_type -1885 606 419 1666 181 24 3 chr1 222363378 222363670 -20300683 + AluJb SINE Alu 1 298 -14 1637 130 25 76 chr1 222363670 222363844 -20300509 - MER44D DNA MER2_type -2072 419 1 652 158 12 85 chr1 222363844 222363885 -20300468 - L1MB7 LINE L1 -93 6091 6066 1766 157 14 0 chr1 222363885 222364171 -20300182 - AluSx SINE Alu -22 290 1 652 158 12 85 chr1 222364171 222364213 -20300140 - L1MB7 LINE L1 -118 6066 6023 284 154 0 19 chr1 222364234 222364286 -20300067 + AluJo SINE Alu 31 81 -221 2784 165 89 43 chr1 222364293 222364833 -20299520 - LTR12 LTR ERV1 -148 566 2 1221 180 25 17 chr1 222364834 222365073 -20299280 + AluJo SINE Alu 71 311 -1 1569 131 4 51 chr1 222365073 222365348 -20299005 - L1MB8 LINE L1 -144 6034 5773 1242 90 64 0 chr1 222365351 222365539 -20298814 - L1PA13 LINE L1 -3 6160 5961 1962 135 13 22 chr1 222365585 222365897 -20298456 + AluSq SINE Alu 1 309 -4 324 262 37 45 chr1 222365988 222366099 -20298254 - L1ME4a LINE L1 -50 6049 1193 1998 133 8 44 chr1 222366138 222366498 -20297855 - L1MB3 LINE L1 -1 6182 5836 241 119 0 0 chr1 222366498 222366540 -20297813 - HSMAR2 DNA Mariner -2 1300 1259 2041 153 0 0 chr1 222366550 222366845 -20297508 + AluSx SINE Alu 1 295 -17 1129 173 0 0 chr1 222366845 222367018 -20297335 + AluJb SINE Alu 134 306 -6 2752 29 3 0 chr1 222367842 222368151 -20296202 + AluY SINE Alu 1 310 -1 4624 127 11 30 chr1 222368611 222368891 -20295462 - HSMAR2 DNA Mariner -37 1265 981 2002 137 3 0 chr1 222368891 222369202 -20295151 - AluJb SINE Alu 0 312 1 4624 127 11 30 chr1 222369202 222369650 -20294703 - HSMAR2 DNA Mariner -321 981 550 600 183 0 0 chr1 222369617 222369721 -20294632 + U13 snRNA snRNA 1 104 0 * 3842 114 0 64 chr1 222369746 222370075 -20294278 - HSMAR2 DNA Mariner -712 590 242 3063 98 19 7 chr1 222370075 222370502 -20293851 - MER57B LTR ERV1 0 434 3 3842 114 0 64 chr1 222370502 222370753 -20293600 - HSMAR2 DNA Mariner -1060 242 50 2280 121 0 0 chr1 222370753 222371059 -20293294 - AluSx SINE Alu -6 306 1 3842 114 0 64 chr1 222371059 222371106 -20293247 - HSMAR2 DNA Mariner -1252 50 2 2921 166 32 31 chr1 222371108 222371979 -20292374 - L1MB3 LINE L1 -345 5838 4971 324 315 25 10 chr1 222372131 222372266 -20292087 - MIR SINE MIR -64 144 30 21 0 0 0 chr1 222372641 222372662 -20291691 + AT_rich Low_complexity Low_complexity 1 21 0 2270 108 3 25 chr1 222372810 222373124 -20291229 - AluSx SINE Alu -5 307 1 346 48 0 48 chr1 222373278 222373340 -20291013 - L1MA3 LINE L1 0 6305 6247 1429 158 19 133 chr1 222373493 222373838 -20290515 + MLT1A1 LTR MaLR 1 293 -72 2320 107 0 0 chr1 222373838 222374138 -20290215 + AluSq SINE Alu 1 300 -13 1429 158 19 133 chr1 222374138 222374204 -20290149 + MLT1A1 LTR MaLR 293 365 0 181 296 19 0 chr1 222374252 222374306 -20290047 + MIR SINE MIR 49 103 -159 429 233 127 58 chr1 222375102 222375291 -20289062 - MIR SINE MIR -33 229 28 21 82 0 0 chr1 222376400 222376449 -20287904 + GC_rich Low_complexity Low_complexity 1 49 0 856 181 64 44 chr1 222377849 222378053 -20286300 + MER3 DNA MER1_type 1 208 -1 2281 97 7 10 chr1 222378110 222378419 -20285934 - AluSp SINE Alu -5 308 1 360 282 114 0 chr1 222379074 222379205 -20285148 - MIR SINE MIR 0 262 117 637 306 134 38 chr1 222379205 222379422 -20284931 + L2 LINE L2 2243 2438 -834 2328 90 3 0 chr1 222379422 222379723 -20284630 - AluSx SINE Alu -6 306 5 637 306 134 38 chr1 222379723 222380253 -20284100 + L2 LINE L2 2438 3081 -191 1614 156 0 81 chr1 222380261 222380582 -20283771 - AluJo SINE Alu -17 295 1 1678 139 109 0 chr1 222380586 222380853 -20283500 - AluSx SINE Alu -16 296 1 435 264 155 35 chr1 222381059 222381400 -20282953 + L2 LINE L2 2920 3301 -12 455 210 20 0 chr1 222381408 222381508 -20282845 - U13 snRNA snRNA -2 102 1 654 224 171 26 chr1 222381615 222381843 -20282510 - MIR SINE MIR 0 262 2 2289 112 3 10 chr1 222381864 222382178 -20282175 + AluSx SINE Alu 1 312 0 762 278 78 38 chr1 222382248 222382568 -20281785 + L2 LINE L2 2978 3310 -3 2341 92 0 13 chr1 222383202 222383508 -20280845 - AluY SINE Alu -9 302 1 1404 229 3 7 chr1 222383687 222383984 -20280369 - AluJb SINE Alu -16 296 1 25 51 0 0 chr1 222384777 222384816 -20279537 + AT_rich Low_complexity Low_complexity 1 39 0 2188 118 7 0 chr1 222384899 222385195 -20279158 - AluSx SINE Alu -13 299 2 2020 158 0 0 chr1 222385198 222385501 -20278852 - AluJo SINE Alu -9 303 1 2059 122 3 39 chr1 222385534 222385846 -20278507 + AluSx SINE Alu 3 303 -9 387 94 0 144 chr1 222386247 222386407 -20277946 - AluSg/x SINE Alu -2 300 164 1724 151 0 21 chr1 222387365 222387650 -20276703 - AluSg SINE Alu -9 301 23 1027 214 120 25 chr1 222387710 222387985 -20276368 + L1M4 LINE L1 4677 4977 -1169 316 155 52 0 chr1 222388007 222388065 -20276288 - FLAM SINE Alu 0 133 73 561 192 0 42 chr1 222388509 222388629 -20275724 + LTR38 LTR ERV1 442 556 0 431 182 13 0 chr1 222388629 222388706 -20275647 - L1M3 LINE L1 -479 5704 5627 1845 206 45 35 chr1 222389903 222390365 -20273988 + MLT1C LTR MaLR 1 467 0 440 133 48 12 chr1 222390396 222390479 -20273874 + L1MC1 LINE L1 6245 6330 -3 801 259 28 5 chr1 222391539 222391751 -20272602 - MER20 DNA MER1_type -1 218 2 484 123 0 0 chr1 222391766 222391847 -20272506 - L1M4 LINE L1 -1103 5043 4963 279 233 156 0 chr1 222391847 222391937 -20272416 - MER46C DNA MER2_type -234 104 1 2429 115 120 5 chr1 222392104 222392488 -20271865 - MSTA LTR MaLR 0 428 1 2002 142 23 13 chr1 222392757 222393060 -20271293 + AluSx SINE Alu 1 306 -6 1608 32 11 5 chr1 222393720 222393910 -20270443 + SVA Other Other 1196 1386 0 198 0 0 0 chr1 222393950 222393972 -20270381 + (A)n Simple_repeat Simple_repeat 1 22 0 28583 106 9 11 chr1 222393983 222394476 -20269877 + L1PA8 LINE L1 948 1441 -4731 186 43 0 0 chr1 222394476 222394499 -20269854 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2318 99 0 0 chr1 222394509 222394854 -20269499 + AluSp SINE Alu 1 345 0 28583 106 9 11 chr1 222394854 222398752 -20265601 + L1PA8 LINE L1 1450 5355 -817 2226 92 0 30 chr1 222398752 222399056 -20265297 + AluY SINE Alu 3 297 -14 28583 106 9 11 chr1 222399056 222399529 -20264824 + L1PA8 LINE L1 5355 5822 -350 2297 114 3 0 chr1 222399529 222399836 -20264517 + AluSp SINE Alu 1 308 -5 28583 106 9 11 chr1 222399836 222400185 -20264168 + L1PA8 LINE L1 5822 6170 -2 1035 161 85 59 chr1 222400202 222400559 -20263794 + MER4B-int LTR ERV1 2348 3730 -2868 1146 178 38 24 chr1 222400596 222400883 -20263470 + MER4B-int LTR ERV1 3731 4021 -2577 437 176 72 52 chr1 222400866 222401019 -20263334 + MER4B-int LTR ERV1 4578 4733 -1865 * 627 182 59 77 chr1 222401147 222401317 -20263036 + MER4B-int LTR ERV1 3787 3953 -4167 377 189 157 0 chr1 222401520 222401650 -20262703 + MER4B-int LTR ERV1 4168 6143 -615 * 1568 185 103 3 chr1 222401643 222401983 -20262370 + MER4B-int LTR ERV1 6376 6749 -9 758 151 79 7 chr1 222401989 222402128 -20262225 + LTR38 LTR ERV1 408 556 0 2690 148 50 0 chr1 222402128 222402588 -20261765 + L1MB3 LINE L1 5701 6183 0 2371 81 13 0 chr1 222402603 222402910 -20261443 + AluSx SINE Alu 1 311 -1 2057 131 6 10 chr1 222404268 222404581 -20259772 - AluSx SINE Alu 0 312 1 237 130 52 43 chr1 222404734 222404849 -20259504 + CT-rich Low_complexity Low_complexity 3 118 0 1611 134 47 22 chr1 222404851 222405126 -20259227 - AluJo SINE Alu -27 285 4 1730 148 7 39 chr1 222406598 222406903 -20257450 - AluJo SINE Alu 0 312 18 1579 178 7 17 chr1 222406922 222407209 -20257144 - AluSx SINE Alu -17 295 12 13228 87 16 12 chr1 222407656 222409631 -20254722 - MER61-int LTR ERV1 -1870 3347 1320 4017 124 90 35 chr1 222409625 222410361 -20253992 - MER61-int LTR ERV1 -4441 776 1 * 2096 122 33 12 chr1 222410361 222410697 -20253656 - MER61A LTR ERV1 0 343 1 4531 143 19 1 chr1 222410697 222411397 -20252956 - MER50-int LTR ERV1 -6490 715 4 3143 148 25 13 chr1 222411441 222411963 -20252390 - MER50 LTR ERV1 -25 709 182 22 0 0 0 chr1 222413016 222413038 -20251315 + AT_rich Low_complexity Low_complexity 1 22 0 1410 180 83 18 chr1 222413783 222414061 -20250292 - AluJo SINE Alu -16 296 1 367 289 81 34 chr1 222414348 222414417 -20249936 - L3 LINE CR1 -11 1566 1502 1547 216 27 19 chr1 222414417 222414787 -20249566 - MLT1A2 LTR MaLR 0 374 2 367 289 81 34 chr1 222414787 222414866 -20249487 - L3 LINE CR1 -75 1502 1411 822 261 37 9 chr1 222415459 222415677 -20248676 - MER92B LTR ERV1 -48 588 365 1068 248 132 39 chr1 222415793 222416608 -20247745 + L1ME LINE L1 420 1288 -4792 4061 249 71 17 chr1 222416625 222417056 -20247297 + L1ME LINE L1 1400 1806 -4274 2123 62 0 0 chr1 222417056 222417314 -20247039 + AluY SINE Alu 41 298 -13 4061 249 71 17 chr1 222417314 222418630 -20245723 + L1ME LINE L1 1806 3230 -2850 2163 136 0 3 chr1 222418630 222418940 -20245413 + AluSx SINE Alu 1 309 -3 4061 249 71 17 chr1 222418940 222419289 -20245064 + L1ME LINE L1 3230 3559 -2521 1501 161 24 4 chr1 222419289 222419683 -20244670 + LTR47A LTR ERVL 1 452 0 1935 228 63 8 chr1 222419684 222420207 -20244146 + L1ME LINE L1 3556 4107 -1973 1594 227 12 39 chr1 222420217 222420481 -20243872 + L1ME LINE L1 4317 4562 -1518 2494 75 0 0 chr1 222420481 222420789 -20243564 + AluY SINE Alu 1 308 -3 1594 227 12 39 chr1 222420789 222421040 -20243313 + L1ME LINE L1 4562 4818 -1262 1409 192 36 23 chr1 222421155 222421463 -20242890 + AluJo SINE Alu 1 312 0 384 246 36 9 chr1 222421603 222421713 -20242640 - MIR SINE MIR 0 262 150 1461 165 56 11 chr1 222422267 222422552 -20241801 + AluJb SINE Alu 1 298 -14 578 263 31 19 chr1 222423322 222423482 -20240871 + MIR SINE MIR 71 232 -30 2005 144 0 3 chr1 222423573 222423872 -20240481 + AluSx SINE Alu 1 298 -14 2193 138 0 0 chr1 222423878 222424182 -20240171 + AluSx SINE Alu 1 304 -8 963 166 13 0 chr1 222424465 222424616 -20239737 + FRAM SINE Alu 1 153 -13 1384 194 21 65 chr1 222424660 222425032 -20239321 + L1MEc LINE L1 26 381 -6015 253 286 0 0 chr1 222425088 222425151 -20239202 + MER96 DNA MER1_type? 1 63 -112 1044 245 72 36 chr1 222425240 222425281 -20239072 - LTR40b LTR ERVL -90 372 334 3859 104 57 0 chr1 222425281 222425858 -20238495 + MER4B LTR ERV1 1 610 0 1044 245 72 36 chr1 222425858 222426175 -20238178 - LTR40b LTR ERVL -128 334 1 359 278 0 0 chr1 222426520 222426610 -20237743 + L1MC4 LINE L1 6614 6703 -1339 303 299 23 0 chr1 222426532 222426619 -20237734 - L1MC4 LINE L1 -1339 6703 6615 * 300 171 114 14 chr1 222426720 222426790 -20237563 + L2 LINE L2 3196 3272 0 234 226 0 19 chr1 222426831 222426884 -20237469 - MER5B DNA MER1_type -126 52 1 442 259 76 32 chr1 222427004 222427162 -20237191 - LTR67 LTR ERVL -20 537 373 1055 188 0 6 chr1 222427506 222427687 -20236666 - AluJb SINE Alu -4 308 129 257 385 83 19 chr1 222428995 222429151 -20235202 - L2 LINE L2 -8 3264 3099 427 250 10 0 chr1 222429330 222429426 -20234927 - L2 LINE L2 0 3313 3217 544 214 8 8 chr1 222429900 222430017 -20234336 - FLAM_A SINE Alu -15 127 11 2035 130 0 0 chr1 222430040 222430346 -20234007 - AluSx SINE Alu 0 306 1 4183 166 55 35 chr1 222431168 222431569 -20232784 - L1MB5 LINE L1 -6 6168 5777 2065 146 0 0 chr1 222431569 222431871 -20232482 - AluSx SINE Alu 0 312 11 4183 166 55 35 chr1 222431871 222432787 -20231566 - L1MB5 LINE L1 -397 5777 4832 216 0 0 0 chr1 222432829 222432853 -20231500 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 584 137 11 0 chr1 222432853 222432948 -20231405 - FLAM_C SINE Alu -25 118 23 765 213 92 0 chr1 222433465 222433639 -20230714 - MER63A DNA MER1_type -20 190 1 387 209 98 20 chr1 222433819 222433957 -20230396 - MLT2F LTR ERVL -2 661 255 188 222 42 56 chr1 222433997 222434069 -20230284 + L2 LINE L2 1605 1675 -1639 222 286 0 0 chr1 222434084 222434154 -20230199 - L2 LINE L2 -1545 1769 1700 262 310 18 26 chr1 222434193 222434306 -20230047 + L2 LINE L2 1792 1903 -1411 332 179 32 63 chr1 222434396 222434491 -20229862 + MLT1J LTR MaLR 110 201 -310 899 135 16 0 chr1 222434593 222434719 -20229634 - AluSq/x SINE Alu -183 130 3 243 113 48 0 chr1 222434762 222434824 -20229529 + (TA)n Simple_repeat Simple_repeat 1 65 0 842 250 86 12 chr1 222434908 222435152 -20229201 - MIR SINE MIR 0 262 1 774 255 127 55 chr1 222435293 222435709 -20228644 - MLT1H LTR MaLR 0 549 104 180 0 0 0 chr1 222435710 222435730 -20228623 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5742 46 4 1 chr1 222436109 222436785 -20227568 - SVA Other Other -3 1383 706 6880 126 50 19 chr1 222437930 222439122 -20225231 - Tigger3b DNA MER2_type -1 1230 2 237 350 25 48 chr1 222441514 222441670 -20222683 - MIR3 SINE MIR -78 130 3 1650 177 0 10 chr1 222442057 222442232 -20222121 - AluJb SINE Alu -16 296 124 270 0 0 0 chr1 222442232 222442262 -20222091 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1650 177 0 10 chr1 222442262 222442385 -20221968 - AluJb SINE Alu -188 124 1 245 236 0 18 chr1 222442705 222442760 -20221593 + L2 LINE L2 3214 3267 -5 633 275 157 17 chr1 222443031 222443318 -20221035 + L3 LINE CR1 1232 1558 -19 23 54 0 0 chr1 222443761 222443798 -20220555 + AT_rich Low_complexity Low_complexity 1 37 0 4660 48 8 2 chr1 222443868 222444454 -20219899 - L1PA6 LINE L1 0 6154 5565 825 217 105 18 chr1 222445017 222445293 -20219060 + HAL1 LINE L1 2205 2504 -3 1627 150 8 19 chr1 222445360 222445627 -20218726 + AluJb SINE Alu 36 299 -13 198 282 173 27 chr1 222445636 222445746 -20218607 - L2 LINE L2 -9 3304 3179 372 304 120 31 chr1 222446121 222446312 -20218041 + MIR SINE MIR 42 249 -13 25 0 0 0 chr1 222446644 222446669 -20217684 + AT_rich Low_complexity Low_complexity 1 25 0 180 125 0 0 chr1 222447819 222447851 -20216502 + (T)n Simple_repeat Simple_repeat 1 32 0 256 254 18 0 chr1 222449166 222449221 -20215132 + MER5A DNA MER1_type 86 141 -48 288 223 446 11 chr1 222449546 222449721 -20214632 - MIR SINE MIR 0 262 12 231 264 176 11 chr1 222450181 222450272 -20214081 - L3 LINE CR1 -257 1320 1215 497 240 170 35 chr1 222450927 222451098 -20213255 - MIR SINE MIR -59 203 10 836 361 82 20 chr1 222451251 222451788 -20212565 - L3 LINE CR1 -745 832 263 186 133 0 0 chr1 222452150 222452180 -20212173 + (T)n Simple_repeat Simple_repeat 1 30 0 1359 148 30 22 chr1 222452190 222452420 -20211933 - AluJb SINE Alu -14 298 67 23 54 0 0 chr1 222454124 222454161 -20210192 + AT_rich Low_complexity Low_complexity 1 37 0 1633 142 4 0 chr1 222454233 222454479 -20209874 - AluJb SINE Alu 0 312 66 1980 89 31 57 chr1 222454565 222454742 -20209611 + L1MA3 LINE L1 5966 6131 -174 1669 164 20 10 chr1 222454742 222455034 -20209319 + AluJo SINE Alu 7 301 -11 1980 89 31 57 chr1 222455034 222455205 -20209148 + L1MA3 LINE L1 6131 6305 0 3461 261 104 57 chr1 222456679 222458252 -20206101 + L2 LINE L2 1620 3271 -42 200 301 55 27 chr1 222458313 222458386 -20205967 + MIR SINE MIR 48 122 -140 2352 97 0 3 chr1 222458410 222458720 -20205633 - AluSq SINE Alu -4 309 1 631 282 10 20 chr1 222458750 222458945 -20205408 + MIR SINE MIR 67 259 -3 1944 119 0 41 chr1 222459702 222460025 -20204328 + AluSp SINE Alu 1 311 0 22 70 0 0 chr1 222460228 222460271 -20204082 + AT_rich Low_complexity Low_complexity 1 43 0 1245 151 5 0 chr1 222460766 222460951 -20203402 - AluJo SINE Alu -126 186 1 390 308 103 19 chr1 222460975 222461189 -20203164 - L1MEc LINE L1 -4912 1398 1167 815 135 0 0 chr1 222461224 222461335 -20203018 + FRAM SINE Alu 37 147 -29 419 0 0 19 chr1 222461335 222461387 -20202966 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 822 352 52 38 chr1 222461424 222462037 -20202316 - L1MEc LINE L1 -5017 1102 481 372 291 80 76 chr1 222462065 222462340 -20202013 - L1MEc LINE L1 -5778 341 66 742 316 70 8 chr1 222462476 222462833 -20201520 - L1MEd LINE L1 -5291 828 450 2076 88 0 0 chr1 222462892 222463152 -20201201 - AluSc SINE Alu -49 260 1 212 352 31 37 chr1 222463219 222463381 -20200972 + L2 LINE L2 2687 2847 -467 1121 100 0 7 chr1 222463560 222463710 -20200643 - AluSq/x SINE Alu -163 149 1 2101 97 33 7 chr1 222463948 222464247 -20200106 - AluSc SINE Alu -1 308 2 344 194 161 21 chr1 222464496 222464589 -20199764 - L2 LINE L2 0 3313 3208 3921 54 4 15 chr1 222464599 222464882 -20199471 - L1P3 LINE L1 -371 5801 5525 2204 90 3 3 chr1 222464882 222465172 -20199181 + AluSc SINE Alu 1 290 -19 3921 54 4 15 chr1 222465172 222465408 -20198945 - L1P3 LINE L1 -647 5525 5288 2797 40 20 0 chr1 222465408 222465752 -20198601 + L1PA8 LINE L1 5816 6169 -3 563 267 226 19 chr1 222465752 222466022 -20198331 - L2 LINE L2 -108 3205 2880 1746 168 6 25 chr1 222466081 222466396 -20197957 - AluJb SINE Alu -3 309 1 1029 83 39 0 chr1 222466445 222466614 -20197739 - L1PA3 LINE L1 0 6168 6013 477 227 76 107 chr1 222466920 222467202 -20197151 - L1ME LINE L1 -5422 661 375 10890 190 32 31 chr1 222467221 222469728 -20194625 - L1MC1 LINE L1 -88 6525 4021 1691 171 0 58 chr1 222469728 222470055 -20194298 - AluJo SINE Alu -4 308 1 10890 190 32 31 chr1 222470055 222471177 -20193176 - L1MC1 LINE L1 -2592 4021 2901 1405 132 25 34 chr1 222471177 222471412 -20192941 + MER46A DNA MER2_type 1 233 -3 10890 190 32 31 chr1 222471412 222471611 -20192742 - L1MC1 LINE L1 -3712 2901 2692 1923 168 3 0 chr1 222471611 222471921 -20192432 - AluJo SINE Alu -1 311 1 10890 190 32 31 chr1 222471921 222472008 -20192345 - L1MC1 LINE L1 -3921 2692 2607 644 193 2 38 chr1 222472006 222472277 -20192076 - L1M LINE L1 -757 5389 5152 * 8945 174 69 104 chr1 222472297 222472771 -20191582 - L1MC1 LINE L1 -3947 2479 1990 2018 148 3 0 chr1 222472771 222473076 -20191277 - AluSq SINE Alu -7 306 1 8945 174 69 104 chr1 222473076 222473169 -20191184 - L1MC1 LINE L1 -4436 1990 1895 2038 129 0 40 chr1 222473169 222473494 -20190859 - AluSx SINE Alu 0 312 1 8945 174 69 104 chr1 222473494 222473707 -20190646 - L1MC1 LINE L1 -4531 1895 1676 575 174 0 0 chr1 222473707 222473799 -20190554 - AluJ/FLAM SINE Alu -220 92 1 8945 174 69 104 chr1 222473799 222474482 -20189871 - L1MC1 LINE L1 -4750 1676 970 649 222 0 0 chr1 222474482 222474608 -20189745 - FLAM_A SINE Alu -4 129 4 8945 174 69 104 chr1 222474608 222475413 -20188940 - L1MC1 LINE L1 -5456 970 342 1638 167 94 0 chr1 222475413 222475689 -20188664 - AluSx SINE Alu -10 302 1 8945 174 69 104 chr1 222475689 222476004 -20188349 - L1MC1 LINE L1 -6084 342 17 22 56 0 0 chr1 222476121 222476157 -20188196 + AT_rich Low_complexity Low_complexity 1 36 0 368 286 167 43 chr1 222476661 222476765 -20187588 + L2 LINE L2 3046 3136 -177 243 0 0 0 chr1 222476765 222476792 -20187561 + (TG)n Simple_repeat Simple_repeat 2 28 0 368 286 167 43 chr1 222476792 222476841 -20187512 + L2 LINE L2 3136 3178 -135 2325 65 10 0 chr1 222476841 222477147 -20187206 - AluY SINE Alu -2 309 1 368 286 167 43 chr1 222477147 222477226 -20187127 + L2 LINE L2 3178 3308 -5 236 179 63 84 chr1 222477302 222477397 -20186956 - L2 LINE L2 -103 3210 3118 24 32 0 0 chr1 222478510 222478541 -20185812 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 222479091 222479113 -20185240 + AT_rich Low_complexity Low_complexity 1 22 0 374 233 60 67 chr1 222479148 222479298 -20185055 - HAL1 LINE L1 -1683 824 676 23 68 0 0 chr1 222479637 222479681 -20184672 + AT_rich Low_complexity Low_complexity 1 44 0 382 312 56 56 chr1 222480116 222480331 -20184022 - MIR SINE MIR 0 262 48 194 307 0 27 chr1 222480354 222480429 -20183924 + MIR SINE MIR 163 235 -27 349 194 117 29 chr1 222480691 222480794 -20183559 - L1ME LINE L1 -301 5820 5709 187 231 0 39 chr1 222481156 222481208 -20183145 - L2 LINE L2 -2 3311 3262 23 0 0 0 chr1 222481794 222481817 -20182536 + AT_rich Low_complexity Low_complexity 1 23 0 236 129 0 86 chr1 222482223 222482293 -20182060 + (TTAA)n Simple_repeat Simple_repeat 1 64 0 190 333 0 13 chr1 222482677 222482752 -20181601 - MIR SINE MIR -111 151 78 33 88 0 22 chr1 222483780 222483916 -20180437 + AT_rich Low_complexity Low_complexity 1 133 0 2650 73 0 3 chr1 222484199 222484543 -20179810 - L1PA6 LINE L1 -11 6143 5801 226 385 10 0 chr1 222485010 222485114 -20179239 + L2 LINE L2 2616 2720 -594 351 257 27 47 chr1 222485518 222485666 -20178687 - L2 LINE L2 -65 3248 3104 2254 208 50 138 chr1 222485667 222486889 -20177464 - L1M2 LINE L1 -5735 1114 1 308 233 33 0 chr1 222486950 222487100 -20177253 + (TCTCTG)n Simple_repeat Simple_repeat 2 156 0 736 254 13 54 chr1 222489643 222489867 -20174486 - MER58C DNA MER1_type 0 215 1 222 376 43 11 chr1 222490053 222490146 -20174207 + L2 LINE L2 2978 3073 -199 356 244 12 12 chr1 222490239 222490325 -20174028 + L2 LINE L2 3187 3272 0 * 384 257 44 18 chr1 222490317 222490430 -20173923 + L2 LINE L2 3194 3309 -4 1396 195 58 7 chr1 222490510 222490802 -20173551 - MER61A LTR ERV1 -28 315 9 18592 87 37 8 chr1 222490815 222493434 -20170919 - MER61A-int LTR ERV1 0 5217 2524 461 269 27 27 chr1 222493569 222493718 -20170635 + MLT1J LTR MaLR 294 442 -69 427 289 80 25 chr1 222493803 222494004 -20170349 + L2 LINE L2 2480 2691 -623 2356 232 36 7 chr1 222494024 222494632 -20169721 + L1MD2 LINE L1 3958 4583 -1563 639 131 0 10 chr1 222494632 222494731 -20169622 + MER4A LTR ERV1 1 98 -566 610 150 277 127 chr1 222494726 222494934 -20169419 + MER4A LTR ERV1 256 495 -169 994 66 0 0 chr1 222494934 222495056 -20169297 + MER11B LTR ERVK 1 122 -1114 257 271 14 0 chr1 222495179 222495249 -20169104 - MIR SINE MIR -107 155 85 6494 102 4 21 chr1 222495307 222496260 -20168093 + MER11C LTR ERVK 121 1057 -14 1220 133 0 11 chr1 222496296 222496476 -20167877 + MER4A LTR ERV1 487 664 0 3125 201 45 19 chr1 222496476 222497774 -20166579 + L1MD2 LINE L1 4580 5894 -465 9332 113 49 39 chr1 222497941 222498358 -20165995 + LTR38-int LTR ERV1 391 802 -3277 6161 150 56 34 chr1 222498358 222499078 -20165275 + LTR57-int LTR ERVL 318 1080 -4263 1722 179 10 3 chr1 222499078 222499368 -20164985 + AluJo SINE Alu 1 292 -20 6161 150 56 34 chr1 222499368 222499928 -20164425 + LTR57-int LTR ERVL 1080 1626 -3717 9332 113 49 39 chr1 222499928 222500361 -20163992 + LTR38-int LTR ERV1 802 1229 -2850 2463 80 0 0 chr1 222500361 222500660 -20163693 - AluY SINE Alu -12 299 1 9332 113 49 39 chr1 222500660 222500715 -20163638 + LTR38-int LTR ERV1 1229 4071 -8 8259 109 21 18 chr1 222500721 222501975 -20162378 + L1P3 LINE L1 4 1260 -5201 180 0 0 0 chr1 222501976 222501996 -20162357 + (TCTCCC)n Simple_repeat Simple_repeat 2 21 0 5419 65 16 15 chr1 222501996 222502736 -20161617 + SVA Other Other 1 741 -645 35 24 0 0 chr1 222503233 222503275 -20161078 + AT_rich Low_complexity Low_complexity 1 42 0 377 39 19 0 chr1 222504152 222504204 -20160149 - L1PA6 LINE L1 -3 6151 6099 563 217 47 57 chr1 222504417 222504629 -20159724 - L1MC5 LINE L1 -47 7914 7705 232 246 87 14 chr1 222504766 222504835 -20159518 + MIR3 SINE MIR 114 187 -21 22 0 0 0 chr1 222505789 222505811 -20158542 + AT_rich Low_complexity Low_complexity 1 22 0 29 78 0 0 chr1 222505885 222505949 -20158404 + AT_rich Low_complexity Low_complexity 1 64 0 27 49 0 0 chr1 222505997 222506038 -20158315 + AT_rich Low_complexity Low_complexity 1 41 0 252 189 0 0 chr1 222506653 222506727 -20157626 + A-rich Low_complexity Low_complexity 1 74 0 511 298 66 12 chr1 222507711 222507953 -20156400 - L1ME4a LINE L1 -206 5915 5661 200 194 9 46 chr1 222709741 222709849 -19954504 + C-rich Low_complexity Low_complexity 4 107 0 223 120 20 20 chr1 222709943 222709993 -19954360 + C-rich Low_complexity Low_complexity 2 51 0 333 0 0 0 chr1 222710576 222710613 -19953740 + (CA)n Simple_repeat Simple_repeat 2 38 0 188 191 45 0 chr1 222710668 222710757 -19953596 + (CA)n Simple_repeat Simple_repeat 1 93 0 25 51 0 0 chr1 222711331 222711370 -19952983 + AT_rich Low_complexity Low_complexity 1 39 0 202 303 26 0 chr1 222711670 222711746 -19952607 - MIR3 SINE MIR -19 189 112 289 279 51 0 chr1 222713112 222713191 -19951162 + MLT1A1 LTR MaLR 42 124 -471 302 333 176 43 chr1 222713229 222713649 -19950704 + L1M4 LINE L1 65 540 -6002 5358 163 7 23 chr1 222713653 222713839 -19950514 + L1PB3 LINE L1 4475 4662 -1492 1825 113 9 94 chr1 222713839 222714168 -19950185 + AluSx SINE Alu 1 301 -11 5358 163 7 23 chr1 222714168 222715318 -19949035 + L1PB3 LINE L1 4662 5776 -378 1948 139 0 0 chr1 222715318 222715621 -19948732 + AluSx SINE Alu 1 303 -9 5358 163 7 23 chr1 222715621 222715993 -19948360 + L1PB3 LINE L1 5776 6152 -2 21 0 0 0 chr1 222715993 222716014 -19948339 + AT_rich Low_complexity Low_complexity 1 21 0 1096 234 29 50 chr1 222716022 222716402 -19947951 + L1 LINE L1 4012 4383 -1763 1383 178 0 0 chr1 222716402 222716633 -19947720 + AluJo SINE Alu 1 231 -81 186 0 28 56 chr1 222716638 222716674 -19947679 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1117 176 29 0 chr1 222716674 222716884 -19947469 + MLT1A1 LTR MaLR 148 363 -2 423 229 21 0 chr1 222717317 222717413 -19946940 + AluSg/x SINE Alu 205 302 -10 269 309 36 0 chr1 222717433 222717517 -19946836 - L1M4 LINE L1 -2031 4115 4029 1637 146 80 4 chr1 222717592 222717867 -19946486 + AluSx SINE Alu 1 296 -16 1382 207 121 0 chr1 222720617 222720922 -19943431 - MSTB LTR MaLR 0 426 85 1842 249 16 16 chr1 222721038 222721472 -19942881 - Tigger2a DNA MER2_type 0 434 1 351 224 293 0 chr1 222721709 222721883 -19942470 + MLT1E LTR MaLR 257 481 -112 297 157 24 24 chr1 222722103 222722186 -19942167 + CT-rich Low_complexity Low_complexity 4 86 0 279 172 23 11 chr1 222723379 222723466 -19940887 + CT-rich Low_complexity Low_complexity 2 89 0 220 378 6 17 chr1 222724044 222724216 -19940137 + (CA)n Simple_repeat Simple_repeat 1 170 0 * 239 296 50 31 chr1 222724117 222724276 -19940077 + (CATG)n Simple_repeat Simple_repeat 3 164 0 * 409 337 6 6 chr1 222724240 222724409 -19939944 + (CA)n Simple_repeat Simple_repeat 1 169 0 277 348 11 22 chr1 222724450 222724631 -19939722 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 433 314 23 0 chr1 222724550 222724722 -19939631 + (CA)n Simple_repeat Simple_repeat 2 177 0 210 273 0 40 chr1 222725786 222725885 -19938468 + CT-rich Low_complexity Low_complexity 2 96 0 284 255 0 87 chr1 222725922 222726106 -19938247 + CT-rich Low_complexity Low_complexity 3 170 0 905 257 93 37 chr1 222727044 222727472 -19936881 - MLT1C LTR MaLR -10 457 6 364 213 43 0 chr1 222727771 222727865 -19936488 + L1MEd LINE L1 965 1062 -5057 851 181 19 7 chr1 222728088 222728243 -19936110 + FRAM SINE Alu 1 157 -19 1099 99 0 0 chr1 222728243 222728385 -19935968 + AluSq/x SINE Alu 1 142 -170 2051 131 0 10 chr1 222728386 222728698 -19935655 + AluSx SINE Alu 1 309 -3 189 111 56 0 chr1 222729550 222729586 -19934767 - MIR SINE MIR -70 138 101 373 165 0 18 chr1 222731003 222731112 -19933241 + CT-rich Low_complexity Low_complexity 1 107 0 1339 201 71 16 chr1 222733760 222734139 -19930214 - MER31A LTR ERV1 -3 482 83 838 141 0 21 chr1 222734146 222734288 -19930065 + AluJ SINE Alu 1 139 -173 363 246 0 0 chr1 222736254 222736380 -19927973 + (TGAA)n Simple_repeat Simple_repeat 2 127 0 536 214 0 6 chr1 222736391 222736550 -19927803 + (TGAA)n Simple_repeat Simple_repeat 3 160 0 276 265 0 0 chr1 222736568 222736704 -19927649 + (TGAA)n Simple_repeat Simple_repeat 3 138 0 198 0 0 0 chr1 222737027 222737049 -19927304 + (A)n Simple_repeat Simple_repeat 1 22 0 401 113 0 0 chr1 222737518 222737571 -19926782 - AluJ/FLAM SINE Alu -223 89 37 805 180 0 47 chr1 222737593 222737765 -19926588 + AluJ SINE Alu 148 311 -1 1139 212 24 0 chr1 222737766 222738016 -19926337 + L1MB5 LINE L1 5721 5976 -198 2669 121 36 44 chr1 222738016 222738207 -19926146 + LTR45B LTR ERV1 1 192 -297 2058 96 3 75 chr1 222738207 222738541 -19925812 + AluSg SINE Alu 1 310 0 2669 121 36 44 chr1 222738541 222738827 -19925526 + LTR45B LTR ERV1 192 474 -15 855 220 38 0 chr1 222738833 222739019 -19925334 + L1MB5 LINE L1 5970 6162 -12 1664 156 3 42 chr1 222739578 222739885 -19924468 + AluJo SINE Alu 10 304 -8 231 313 10 21 chr1 222740153 222740249 -19924104 - MLT1I LTR MaLR -234 175 81 297 379 75 11 chr1 222741888 222742329 -19922024 + HAL1 LINE L1 1193 1661 -846 552 244 98 6 chr1 222742386 222742550 -19921803 + L1M4 LINE L1 2762 2940 -3206 5502 259 62 77 chr1 222742619 222744740 -19919613 + L1M4c LINE L1 1701 3852 -2530 1938 152 3 7 chr1 222744740 222745050 -19919303 + AluJo SINE Alu 2 310 -2 5502 259 62 77 chr1 222745050 222745471 -19918882 + L1M4c LINE L1 3852 4278 -2104 1564 191 25 7 chr1 222745471 222745753 -19918600 + AluSx SINE Alu 5 291 -21 5502 259 62 77 chr1 222745753 222746442 -19917911 + L1M4c LINE L1 4278 4902 -1480 353 381 29 34 chr1 222746551 222746790 -19917563 + HERV16 LTR ERVL 1383 1620 -3376 401 380 21 0 chr1 222746865 222747057 -19917296 + HERV16 LTR ERVL 1795 1990 -3664 368 312 16 16 chr1 222747138 222747263 -19917090 + HERV16 LTR ERVL 3096 3220 -2265 361 348 90 20 chr1 222747295 222747496 -19916857 + HERV16 LTR ERVL 3328 3542 -2222 1056 311 81 46 chr1 222747614 222748393 -19915960 + HERV16 LTR ERVL 3717 4522 -1132 500 154 13 0 chr1 222748405 222748483 -19915870 - LTR47A LTR ERVL 0 452 374 229 98 20 20 chr1 222748511 222748562 -19915791 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2045 132 82 11 chr1 222748582 222748946 -19915407 - LTR47A LTR ERVL -62 390 1 695 370 33 33 chr1 222748952 222749285 -19915068 + HERV16 LTR ERVL 4527 4862 -623 1669 205 42 35 chr1 222749285 222749547 -19914806 + MSTB1 LTR MaLR 1 269 -163 8033 60 0 0 chr1 222749547 222750516 -19913837 - LTR5 LTR ERVK 0 969 1 1669 205 42 35 chr1 222750516 222750682 -19913671 + MSTB1 LTR MaLR 269 432 0 695 370 33 33 chr1 222750682 222750769 -19913584 + HERV16 LTR ERVL 4861 4947 -538 606 230 134 64 chr1 222751163 222751537 -19912816 + LTR16A1 LTR ERVL 1 400 -57 309 259 28 9 chr1 222751630 222751738 -19912615 + L1ME3A LINE L1 4647 4756 -1626 832 233 135 41 chr1 222751739 222752005 -19912348 + MLT1A1 LTR MaLR 21 311 -54 1406 0 0 0 chr1 222752015 222752178 -19912175 - L1HS LINE L1 0 6155 5993 420 141 14 0 chr1 222752178 222752249 -19912104 + MLT1A1 LTR MaLR 325 396 0 394 289 59 0 chr1 222752249 222752384 -19911969 + L1ME3A LINE L1 4753 4895 -1487 483 288 177 28 chr1 222752534 222752861 -19911492 + L1ME3A LINE L1 4913 5288 -1094 876 213 5 15 chr1 222752895 222753092 -19911261 + AluJo SINE Alu 113 307 -5 26084 106 74 66 chr1 222753106 222758415 -19905938 + L1PA7 LINE L1 12 5378 -776 2726 16 0 3 chr1 222758415 222758726 -19905627 + AluY SINE Alu 1 310 -1 26084 106 74 66 chr1 222758726 222759378 -19904975 + L1PA7 LINE L1 5378 6023 -131 276 286 0 31 chr1 222759486 222759584 -19904769 + CT-rich Low_complexity Low_complexity 2 96 0 325 373 59 15 chr1 222759584 222759855 -19904498 + HAL1b LINE L1 1042 1324 -24 2175 189 81 10 chr1 222760068 222760577 -19903776 - MER49 LTR ERV1 -132 791 247 1858 170 3 3 chr1 222760577 222760883 -19903470 - AluJo SINE Alu -6 306 1 3480 200 47 1 chr1 222761274 222761960 -19902393 + LTR62 LTR ERVK 1 717 -2 384 210 9 48 chr1 222761984 222762327 -19902026 + GA-rich Low_complexity Low_complexity 1 329 0 363 73 0 0 chr1 222766645 222766700 -19897653 + (CA)n Simple_repeat Simple_repeat 2 56 0 308 132 38 38 chr1 222766707 222766813 -19897540 + (CAGAGA)n Simple_repeat Simple_repeat 4 109 0 412 283 23 12 chr1 222767351 222767524 -19896829 - AluY SINE Alu -95 216 42 1495 249 54 90 chr1 222767533 222767955 -19896398 + L1ME3A LINE L1 5585 5962 -444 1558 177 85 3 chr1 222767955 222768238 -19896115 + AluJo SINE Alu 1 306 -6 1495 249 54 90 chr1 222768238 222768668 -19895685 + L1ME3A LINE L1 5962 6406 0 266 306 9 9 chr1 222768852 222768963 -19895390 + L1MCa LINE L1 1332 1442 -4974 358 345 144 16 chr1 222768989 222769183 -19895170 + L1MCa LINE L1 1401 1756 -1031 443 234 83 0 chr1 222772081 222772245 -19892108 + MLT1F LTR MaLR 124 303 -239 191 139 28 0 chr1 222772905 222772948 -19891405 - MIR SINE MIR -118 144 101 249 159 23 23 chr1 222774365 222774453 -19889900 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 408 283 11 42 chr1 222774571 222774809 -19889544 + GA-rich Low_complexity Low_complexity 1 230 0 405 0 0 0 chr1 222775827 222775872 -19888481 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 191 45 0 chr1 222775927 222776016 -19888337 + (CA)n Simple_repeat Simple_repeat 1 93 0 32 43 0 0 chr1 222776583 222776629 -19887724 + AT_rich Low_complexity Low_complexity 1 46 0 215 303 26 0 chr1 222776929 222777005 -19887348 - MIR3 SINE MIR -19 189 112 180 352 33 11 chr1 222776931 222777022 -19887331 - L2 LINE L2 -1681 1633 1541 * 752 215 22 22 chr1 222781291 222781514 -19882839 + L1 LINE L1 4038 4260 -1886 1116 213 38 90 chr1 222781660 222782140 -19882213 + L1MC5 LINE L1 6674 7128 -833 3111 239 52 67 chr1 222782150 222783371 -19880982 + L1MCc LINE L1 20 1565 -4857 1289 146 46 0 chr1 222783360 222783600 -19880753 + L1PB4 LINE L1 5718 5968 -188 * 2283 82 3 29 chr1 222783824 222784139 -19880214 + AluSp SINE Alu 1 307 -6 1579 130 109 32 chr1 222784143 222784428 -19879925 + AluSg1 SINE Alu 3 309 0 188 139 0 23 chr1 222784572 222784615 -19879738 + (TTAGGG)n Simple_repeat Simple_repeat 5 46 0 261 288 0 0 chr1 222786375 222786434 -19877919 + FRAM/FAM SINE Alu 6 64 -102 195 221 0 42 chr1 222789527 222789622 -19874731 + G-rich Low_complexity Low_complexity 1 91 0 573 202 0 0 chr1 222790791 222790890 -19873463 + FLAM_A SINE Alu 28 126 -16 1589 163 67 23 chr1 222791036 222791167 -19873186 + MLT1A1 LTR MaLR 6 130 -235 1502 161 0 0 chr1 222791167 222791403 -19872950 + AluJb SINE Alu 1 236 -76 186 0 28 56 chr1 222791403 222791439 -19872914 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1589 163 67 23 chr1 222791439 222791649 -19872704 + MLT1A1 LTR MaLR 129 363 -2 429 262 19 0 chr1 222792068 222792175 -19872178 + AluY SINE Alu 193 301 -10 343 323 124 37 chr1 222792195 222792354 -19871999 - L1MEc LINE L1 -2031 4184 4000 1928 105 80 4 chr1 222792354 222792630 -19871723 + AluSx SINE Alu 1 297 -15 343 323 124 37 chr1 222792630 222792687 -19871666 - L1MEc LINE L1 -2215 4000 3949 207 0 0 0 chr1 222792691 222792714 -19871639 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 411 216 0 0 chr1 222792714 222792788 -19871565 - AluJ/FRAM SINE Alu -23 289 216 345 317 28 42 chr1 222792988 222793130 -19871223 - L1MEc LINE L1 -2532 3683 3544 1592 183 27 6 chr1 222793165 222793499 -19870854 - Tigger1 DNA MER2_type 0 2418 2078 1022 84 0 0 chr1 222793508 222793639 -19870714 - AluSg SINE Alu -179 131 1 10120 118 30 3 chr1 222793639 222795304 -19869049 - Tigger1 DNA MER2_type -330 2088 379 1686 227 41 0 chr1 222795502 222795916 -19868437 - L1MB7 LINE L1 -212 5972 5542 517 360 187 0 chr1 222795925 222796331 -19868022 - L1MEc LINE L1 -2665 3550 3069 332 411 73 24 chr1 222797273 222797614 -19866739 - L1MEc LINE L1 -4161 2235 1878 2118 125 0 10 chr1 222797798 222798111 -19866242 - AluSx SINE Alu -2 310 1 1094 106 0 0 chr1 222798112 222798254 -19866099 - AluSq/x SINE Alu -171 142 1 893 172 19 6 chr1 222798254 222798411 -19865942 - AluJb SINE Alu -17 295 137 356 202 43 0 chr1 222798634 222798728 -19865625 - L1MEc LINE L1 -5057 1148 1051 792 257 93 37 chr1 222799027 222799455 -19864898 + MLT1C LTR MaLR 6 457 -10 213 221 0 0 chr1 222799816 222799884 -19864469 + (CA)n Simple_repeat Simple_repeat 2 69 0 519 228 0 0 chr1 222799909 222800089 -19864264 + (CA)n Simple_repeat Simple_repeat 1 180 0 319 321 0 0 chr1 222800104 222800213 -19864140 + (CA)n Simple_repeat Simple_repeat 2 110 0 227 263 21 0 chr1 222800220 222800315 -19864038 + (CATA)n Simple_repeat Simple_repeat 4 100 0 2809 250 59 13 chr1 222804983 222805315 -19859038 + L1MB7 LINE L1 5259 5574 -610 1634 171 7 23 chr1 222805315 222805620 -19858733 + AluJb SINE Alu 1 300 -12 2809 250 59 13 chr1 222805620 222806156 -19858197 + L1MB7 LINE L1 5574 6167 -17 209 289 0 0 chr1 222808687 222808732 -19855621 + polypurine Low_complexity Low_complexity 2 46 0 22 0 0 0 chr1 222808844 222808866 -19855487 + GC_rich Low_complexity Low_complexity 1 22 0 33 90 0 0 chr1 222809293 222809382 -19854971 + GC_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr1 222809555 222809577 -19854776 + GC_rich Low_complexity Low_complexity 1 22 0 41 89 0 19 chr1 222809605 222809763 -19854590 + GC_rich Low_complexity Low_complexity 1 155 0 189 139 70 0 chr1 222811142 222811185 -19853168 + MIR SINE MIR 91 136 -72 684 163 15 30 chr1 222812605 222812740 -19851613 + FLAM_C SINE Alu 1 133 0 2248 123 0 9 chr1 222812751 222813067 -19851286 + AluSq SINE Alu 1 313 0 1973 147 17 0 chr1 222813087 222813213 -19851140 + AluJo SINE Alu 1 123 -189 216 0 0 0 chr1 222813213 222813237 -19851116 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1973 147 17 0 chr1 222813237 222813402 -19850951 + AluJo SINE Alu 123 297 -15 1769 224 28 2 chr1 222813407 222813835 -19850518 + ERVL LTR ERVL 1771 2209 -3555 273 226 0 0 chr1 222814623 222814707 -19849646 + (CAGAGA)n Simple_repeat Simple_repeat 1 84 0 191 244 0 11 chr1 222814744 222814834 -19849519 + GA-rich Low_complexity Low_complexity 2 90 0 396 0 0 0 chr1 222815491 222815535 -19848818 + (TG)n Simple_repeat Simple_repeat 1 44 0 427 29 29 29 chr1 222815535 222815604 -19848749 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 3445 192 127 21 chr1 222815828 222816727 -19847626 - L1MD2 LINE L1 -48 6311 5318 47 0 0 0 chr1 222816728 222816775 -19847578 + AT_rich Low_complexity Low_complexity 1 47 0 6198 226 67 50 chr1 222816812 222817190 -19847163 - L1MD2 LINE L1 -818 5328 4958 183 42 0 0 chr1 222817190 222817214 -19847139 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6198 226 67 50 chr1 222817214 222818566 -19845787 - L1MD2 LINE L1 -1188 4958 3631 781 171 0 64 chr1 222818566 222818706 -19845647 - FLAM_C SINE Alu 0 133 3 6198 226 67 50 chr1 222818706 222819065 -19845288 - L1MD2 LINE L1 -2515 3631 3280 2205 114 3 19 chr1 222819065 222819382 -19844971 - AluSp SINE Alu -1 312 1 6198 226 67 50 chr1 222819382 222819670 -19844683 - L1MD2 LINE L1 -2866 3280 2925 1151 231 61 0 chr1 222819664 222819975 -19844378 + L1M4 LINE L1 2445 2774 -3372 * 842 8 58 0 chr1 222820776 222820896 -19843457 + (TTTTA)n Simple_repeat Simple_repeat 1 127 0 719 212 106 0 chr1 222820896 222821028 -19843325 - FRAM SINE Alu -30 146 1 249 257 96 48 chr1 222821226 222821303 -19843050 + MLT2F LTR ERVL 466 538 -125 2361 93 7 3 chr1 222821303 222821603 -19842750 + AluSq SINE Alu 1 301 -12 249 257 96 48 chr1 222821603 222821712 -19842641 + MLT2F LTR ERVL 538 661 -2 919 159 0 18 chr1 222821755 222821918 -19842435 + FRAM SINE Alu 11 170 -6 263 332 74 0 chr1 222822421 222822611 -19841742 + L1ME LINE L1 5547 5750 -371 245 293 58 80 chr1 222822680 222822868 -19841485 + HAL1 LINE L1 5 188 -2319 598 236 36 12 chr1 222823005 222823170 -19841183 + L1MEc LINE L1 34 202 -6194 1900 170 5 59 chr1 222823221 222823627 -19840726 + MLT1B LTR MaLR 1 384 -6 979 243 50 0 chr1 222823627 222824211 -19840142 + L1MEc LINE L1 332 987 -5409 1820 155 14 4 chr1 222824221 222824498 -19839855 + AluSx SINE Alu 3 282 -30 360 261 0 75 chr1 222824644 222824778 -19839575 + L1MC4 LINE L1 6581 6704 -1338 544 135 0 0 chr1 222824837 222824933 -19839420 - L1MA5 LINE L1 -5 6295 6200 224 119 0 24 chr1 222824972 222825014 -19839339 + (TA)n Simple_repeat Simple_repeat 2 42 0 37 69 0 0 chr1 222826386 222826458 -19837895 + AT_rich Low_complexity Low_complexity 1 72 0 2451 78 0 0 chr1 222826530 222826826 -19837527 + AluY SINE Alu 1 296 -15 604 37 101 0 chr1 222826978 222827200 -19837153 + (TA)n Simple_repeat Simple_repeat 1 244 0 1228 148 0 11 chr1 222827217 222827406 -19836947 + AluJb SINE Alu 110 296 -16 495 221 7 71 chr1 222827645 222827785 -19836568 + AluJo SINE Alu 12 142 -170 248 241 0 69 chr1 222827785 222827872 -19836481 - L1ME LINE L1 -558 5563 5483 1550 194 41 10 chr1 222827997 222828290 -19836063 - AluJb SINE Alu -10 302 1 388 189 0 135 chr1 222828293 222828441 -19835912 + LTR41 LTR ERVL 640 767 -6 2452 129 64 19 chr1 222828720 222829140 -19835213 + MER1A DNA MER1_type 1 439 -90 2233 115 0 0 chr1 222835363 222835667 -19828686 + AluSg SINE Alu 1 304 -6 214 180 11 79 chr1 222835904 222835993 -19828360 + (CAGGG)n Simple_repeat Simple_repeat 3 85 0 458 155 0 0 chr1 222838753 222838837 -19825516 - AluSq SINE Alu 0 313 230 909 154 20 7 chr1 222838839 222838988 -19825365 - AluSq SINE Alu -161 151 1 902 244 38 16 chr1 222838991 222839439 -19824914 - L1M2 LINE L1 -4226 2623 2069 2213 105 3 23 chr1 222839439 222839745 -19824608 - AluSg SINE Alu -10 300 1 902 244 38 16 chr1 222839745 222839851 -19824502 - L1M2 LINE L1 -4780 2069 1967 707 158 0 0 chr1 222839852 222839953 -19824400 - FLAM_C SINE Alu -40 103 3 800 119 0 0 chr1 222839957 222840066 -19824287 + FLAM_C SINE Alu 29 137 -6 1922 106 3 65 chr1 222840068 222840361 -19823992 + AluSx SINE Alu 37 311 -1 295 296 30 69 chr1 222840756 222840848 -19823505 + L2 LINE L2 3118 3212 -101 2299 115 0 0 chr1 222840848 222841152 -19823201 + AluSq SINE Alu 1 304 -9 295 296 30 69 chr1 222841152 222841262 -19823091 + L2 LINE L2 3212 3312 -1 2048 122 0 0 chr1 222841699 222841969 -19822384 + AluSx SINE Alu 1 270 -42 359 246 109 36 chr1 222842093 222842203 -19822150 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr1 222842590 222842618 -19821735 + AT_rich Low_complexity Low_complexity 1 28 0 1447 208 40 32 chr1 222842745 222843510 -19820843 - L1M4c LINE L1 -4071 2313 1451 940 134 20 25 chr1 222843510 222843711 -19820642 - L1MA5 LINE L1 0 6300 6101 1940 166 14 0 chr1 222844878 222845174 -19819179 - AluJb SINE Alu -12 300 1 442 387 31 23 chr1 222845337 222845896 -19818457 - L2 LINE L2 -2 3270 2707 * 526 263 0 8 chr1 222845894 222846012 -19818341 - L2 LINE L2 0 3313 3197 209 139 23 0 chr1 222846291 222846334 -19818019 + (TA)n Simple_repeat Simple_repeat 1 44 0 6532 228 80 25 chr1 222846448 222846815 -19817538 + L1M3 LINE L1 492 837 -5807 1876 177 7 3 chr1 222846815 222847120 -19817233 + AluJo SINE Alu 4 309 -3 6532 228 80 25 chr1 222847120 222850127 -19814226 + L1M3 LINE L1 837 3677 -2967 1802 174 0 36 chr1 222850127 222850431 -19813922 + AluJb SINE Alu 3 295 -17 6532 228 80 25 chr1 222850431 222851034 -19813319 + L1M3 LINE L1 3677 4245 -2399 2331 104 0 13 chr1 222851034 222851342 -19813011 + AluSq SINE Alu 1 304 -9 6532 228 80 25 chr1 222851342 222851551 -19812802 + L1M3 LINE L1 4245 4881 -1763 2085 140 0 28 chr1 222851551 222851872 -19812481 + AluSx SINE Alu 1 312 0 2687 171 16 26 chr1 222851882 222852753 -19811600 + L1M3 LINE L1 5245 6112 -569 2477 78 0 0 chr1 222852755 222853064 -19811289 + AluY SINE Alu 1 309 -2 1060 181 0 0 chr1 222853064 222853250 -19811103 + AluSp SINE Alu 134 319 0 902 179 12 16 chr1 222853250 222853462 -19810891 + L1M3 LINE L1 6102 6271 -398 322 276 0 51 chr1 222853497 222853522 -19810831 + L1MC4 LINE L1 6612 6637 -1405 2307 98 0 29 chr1 222853522 222853829 -19810524 + AluSx SINE Alu 1 298 -14 322 276 0 51 chr1 222853829 222853901 -19810452 + L1MC4 LINE L1 6637 6704 -1338 560 153 9 27 chr1 222853927 222854038 -19810315 + Tigger2a DNA MER2_type 1 109 -325 711 140 182 0 chr1 222854041 222854184 -19810169 + Tigger2a DNA MER2_type 242 410 -34 866 177 50 0 chr1 222854248 222854429 -19809924 + L1ME LINE L1 5191 5380 -766 370 295 63 32 chr1 222854428 222854494 -19809859 + L1MC4 LINE L1 7606 7668 -374 * 2620 49 3 0 chr1 222854494 222854799 -19809554 - AluY SINE Alu -5 306 1 370 295 63 32 chr1 222854799 222854922 -19809431 + L1MC4 LINE L1 7668 7801 -241 271 258 31 31 chr1 222855105 222855202 -19809151 + L1ME LINE L1 5561 5657 -464 201 298 66 41 chr1 222855596 222855717 -19808636 + MIR SINE MIR 30 153 -55 2869 129 21 2 chr1 222855990 222856408 -19807945 - MSTC LTR MaLR -2 426 1 417 209 18 36 chr1 222856602 222856712 -19807641 - MER3 DNA MER1_type -1 208 101 3362 228 72 16 chr1 222856750 222857660 -19806693 + L1MEc LINE L1 311 1271 -5125 3606 251 49 8 chr1 222857768 222858881 -19805472 + L1M4 LINE L1 3236 4394 -1752 182 294 33 22 chr1 222859173 222859265 -19805088 - L2 LINE L2 -1891 1423 1331 1737 168 34 3 chr1 222860221 222860513 -19803840 - AluJo SINE Alu -11 301 1 930 179 6 0 chr1 222861911 222862073 -19802280 + FRAM SINE Alu 1 163 -13 348 243 14 0 chr1 222862920 222862990 -19801363 + MER119 DNA MER1_type 1 71 -512 803 109 0 9 chr1 222862990 222863100 -19801253 + AluJb SINE Alu 17 125 -187 2120 225 14 18 chr1 222863120 222863556 -19800797 - Tigger2a DNA MER2_type 0 434 1 466 179 137 24 chr1 222863634 222863802 -19800551 + MER119 DNA MER1_type 352 538 -45 874 213 0 18 chr1 222863807 222863819 -19800534 - FRAM SINE Alu -156 156 145 198 91 0 0 chr1 222863819 222863852 -19800501 + (TTTAA)n Simple_repeat Simple_repeat 2 34 0 874 213 0 18 chr1 222863852 222864003 -19800350 - FRAM SINE Alu -167 145 1 252 341 12 0 chr1 222866502 222866587 -19797766 + MIR3 SINE MIR 79 164 -44 23 0 0 0 chr1 222867162 222867185 -19797168 + GC_rich Low_complexity Low_complexity 1 23 0 346 176 28 49 chr1 222867313 222867455 -19796898 + (CCCCG)n Simple_repeat Simple_repeat 5 143 0 21 0 0 0 chr1 222867525 222867546 -19796807 + GC_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr1 222868196 222868252 -19796101 + GC_rich Low_complexity Low_complexity 1 56 0 235 203 40 27 chr1 222871903 222871977 -19792376 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 395 166 23 40 chr1 222871990 222872165 -19792188 + (TCTCTG)n Simple_repeat Simple_repeat 1 172 0 251 349 12 41 chr1 222872750 222872919 -19791434 + MER5C DNA MER1_type 5 168 -156 340 293 103 23 chr1 222873129 222873303 -19791050 + L3 LINE CR1 1250 1437 -140 1188 113 11 6 chr1 222873363 222873540 -19790813 - AluJb SINE Alu -31 281 104 715 206 0 7 chr1 222873594 222873730 -19790623 - AluJo SINE Alu -92 220 86 274 305 76 8 chr1 222874704 222874822 -19789531 - MIR3 SINE MIR -53 155 30 225 0 0 0 chr1 222875479 222875504 -19788849 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2071 181 94 10 chr1 222877103 222877496 -19786857 - MSTB LTR MaLR 0 426 1 182 256 107 58 chr1 222877509 222877630 -19786723 + MIR SINE MIR 9 135 -127 1602 158 62 21 chr1 222877897 222878188 -19786165 + AluJo SINE Alu 1 303 -9 313 321 88 7 chr1 222878432 222878569 -19785784 - L1MD3 LINE L1 -135 7860 7713 1822 144 39 0 chr1 222878874 222879158 -19785195 - AluJo SINE Alu -17 295 1 2152 105 10 0 chr1 222880412 222880708 -19783645 + AluSx SINE Alu 3 301 -11 311 286 59 0 chr1 222881487 222881606 -19782747 - L1ME2 LINE L1 0 6164 6039 358 241 128 21 chr1 222881623 222881764 -19782589 + MER3 DNA MER1_type 15 123 -86 402 325 25 0 chr1 222882029 222882192 -19782161 - L1ME2 LINE L1 -389 5775 5609 1208 185 150 15 chr1 222882642 222882902 -19781451 + AluSx SINE Alu 1 295 -17 387 326 74 68 chr1 222883728 222884093 -19780260 + L1M4c LINE L1 944 1429 -1314 4315 216 42 49 chr1 222884119 222885804 -19778549 - L1MB5 LINE L1 0 6174 4480 2014 148 0 3 chr1 222885804 222886115 -19778238 - AluJb SINE Alu -2 310 1 4315 216 42 49 chr1 222886115 222886230 -19778123 - L1MB5 LINE L1 -1694 4480 4366 1564 133 78 37 chr1 222886230 222886524 -19777829 - AluJo SINE Alu -6 306 1 4315 216 42 49 chr1 222886524 222886926 -19777427 - L1MB5 LINE L1 -1808 4366 3991 5085 163 7 22 chr1 222886934 222887305 -19777048 - L1PB3 LINE L1 -2 6152 5777 2024 132 0 0 chr1 222887305 222887608 -19776745 - AluSx SINE Alu -9 303 1 5085 163 7 22 chr1 222887608 222888758 -19775595 - L1PB3 LINE L1 -377 5777 4662 1870 111 9 93 chr1 222888758 222889090 -19775263 - AluSx SINE Alu -8 304 1 5085 163 7 22 chr1 222889090 222889276 -19775077 - L1PB3 LINE L1 -1492 4662 4475 377 333 176 43 chr1 222889280 222889700 -19774653 - L1M4 LINE L1 -6002 540 65 287 266 51 0 chr1 222889738 222889817 -19774536 - MLT1G1 LTR MaLR -471 124 42 319 289 74 30 chr1 222890032 222890167 -19774186 + L2 LINE L2 2343 2483 -831 610 177 14 43 chr1 222890182 222890323 -19774030 + MLT1A1 LTR MaLR 2 138 -227 1246 163 84 24 chr1 222890326 222890577 -19773776 + AluJo SINE Alu 43 308 -4 2162 109 0 3 chr1 222890579 222890915 -19773438 + AluSx SINE Alu 1 335 0 405 196 20 2 chr1 222890973 222891117 -19773236 + MLT1A1 LTR MaLR 188 365 0 307 238 29 38 chr1 222891129 222891234 -19773119 + L2 LINE L2 2873 2976 -337 211 310 10 70 chr1 222891755 222891855 -19772498 + MIR SINE MIR 84 177 -85 265 240 32 20 chr1 222891952 222892209 -19772144 + (TG)n Simple_repeat Simple_repeat 1 260 0 5011 192 63 13 chr1 222892982 222894446 -19769907 - L1MB7 LINE L1 -345 5839 4450 1985 149 0 0 chr1 222894446 222894734 -19769619 + AluSx SINE Alu 1 288 -24 252 86 0 0 chr1 222894734 222894769 -19769584 + (CA)n Simple_repeat Simple_repeat 2 36 0 5011 192 63 13 chr1 222894769 222895032 -19769321 - L1MB7 LINE L1 -1733 4451 4017 810 219 82 22 chr1 222895060 222895329 -19769024 - Charlie2 DNA MER1_type -731 2131 1847 244 275 58 0 chr1 222895568 222895637 -19768716 - L2 LINE L2 -196 3076 3004 285 344 258 0 chr1 222895668 222895831 -19768522 - MIR SINE MIR -30 232 28 208 210 25 62 chr1 222896265 222896346 -19768007 + C-rich Low_complexity Low_complexity 5 82 0 234 174 0 0 chr1 222896825 222896871 -19767482 + (TG)n Simple_repeat Simple_repeat 1 46 0 31 76 0 0 chr1 222898525 222898591 -19765762 + GC_rich Low_complexity Low_complexity 1 66 0 23 78 0 0 chr1 222898725 222898776 -19765577 + GC_rich Low_complexity Low_complexity 1 51 0 196 291 139 12 chr1 222900085 222900171 -19764182 + MER5B DNA MER1_type 8 104 -74 2402 66 0 10 chr1 222901066 222901369 -19762984 + AluY SINE Alu 1 300 -11 216 0 0 0 chr1 222901436 222901460 -19762893 + (TA)n Simple_repeat Simple_repeat 1 24 0 401 29 71 0 chr1 222901461 222901531 -19762822 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 209 33 33 0 chr1 222901833 222901863 -19762490 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 834 110 27 9 chr1 222901875 222902094 -19762259 + (TCCA)n Simple_repeat Simple_repeat 1 223 0 346 248 217 13 chr1 222902282 222902439 -19761914 - L3 LINE CR1 -42 1535 1347 2217 86 7 0 chr1 222902446 222902737 -19761616 - AluSc SINE Alu -16 293 1 217 320 82 0 chr1 222902766 222902863 -19761490 + L2 LINE L2 3168 3272 0 387 66 44 44 chr1 222902863 222902954 -19761399 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 546 89 100 0 chr1 222903014 222903297 -19761056 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 201 89 67 0 chr1 222903309 222903354 -19760999 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 470 145 52 29 chr1 222903385 222903557 -19760796 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 1207 167 4 39 chr1 222904427 222904661 -19759692 - AluJo SINE Alu 0 312 87 1113 287 60 14 chr1 222904662 222905239 -19759114 - L1MD3 LINE L1 -10 7985 7266 188 330 99 0 chr1 222906350 222906441 -19757912 - L2 LINE L2 -35 3237 3138 263 250 10 0 chr1 222906717 222906817 -19757536 + (TG)n Simple_repeat Simple_repeat 1 101 0 370 216 47 0 chr1 222906851 222907022 -19757331 + (TG)n Simple_repeat Simple_repeat 1 179 0 472 231 29 19 chr1 222907039 222907361 -19756992 + (TG)n Simple_repeat Simple_repeat 1 325 0 2295 149 78 8 chr1 222908056 222908452 -19755901 - MSTA LTR MaLR -4 424 1 248 259 17 86 chr1 222908860 222908976 -19755377 + L2 LINE L2 3180 3287 -26 1046 128 0 0 chr1 222909020 222909169 -19755184 - FRAM SINE Alu -8 168 20 924 259 136 17 chr1 222909784 222910247 -19754106 - L1ME1 LINE L1 -274 5892 5363 1691 161 29 4 chr1 222910254 222910533 -19753820 - AluJo SINE Alu -21 291 6 1202 170 113 0 chr1 222910555 222910785 -19753568 - AluJo SINE Alu -56 256 1 1171 176 27 46 chr1 222910785 222911047 -19753306 + MSTB1 LTR MaLR 175 431 -1 1260 198 55 40 chr1 222911914 222912129 -19752224 - MLT1A1 LTR MaLR 0 365 143 2190 136 113 18 chr1 222912129 222912520 -19751833 - MSTA LTR MaLR 0 428 1 1260 198 55 40 chr1 222912520 222912640 -19751713 - MLT1A1 LTR MaLR -222 143 26 1838 122 4 0 chr1 222912649 222912903 -19751450 - AluSx SINE Alu -57 255 1 281 171 0 0 chr1 222912903 222912961 -19751392 - MLT1A1 LTR MaLR -315 50 1 793 306 39 23 chr1 222913254 222913342 -19751011 + L1M4 LINE L1 4844 4929 -1235 1043 247 89 81 chr1 222913342 222913735 -19750618 + MSTD LTR MaLR 1 396 0 793 306 39 23 chr1 222913735 222914218 -19750135 + L1M4 LINE L1 4929 5422 -742 313 311 14 0 chr1 222914289 222914363 -19749990 + L1ME3A LINE L1 6087 6161 -9 505 346 104 57 chr1 222914629 222914802 -19749551 + L1MEd LINE L1 521 684 -5435 2380 78 0 13 chr1 222914802 222915111 -19749242 + AluY SINE Alu 1 305 -6 505 346 104 57 chr1 222915111 222915333 -19749020 + L1MEd LINE L1 684 894 -5225 1805 85 72 78 chr1 222915333 222915639 -19748714 + AluSp SINE Alu 1 304 -9 369 0 0 0 chr1 222915639 222915680 -19748673 + (TA)n Simple_repeat Simple_repeat 1 41 0 505 346 104 57 chr1 222915680 222915742 -19748611 + L1MEd LINE L1 893 1002 -5117 267 247 79 0 chr1 222915742 222915831 -19748522 + HAL1 LINE L1 1 96 -2411 24 0 0 0 chr1 222915844 222915868 -19748485 + AT_rich Low_complexity Low_complexity 1 24 0 217 122 0 41 chr1 222915964 222916013 -19748340 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2960 288 110 17 chr1 222916020 222917451 -19746902 + HAL1 LINE L1 104 1668 -839 640 291 160 8 chr1 222917468 222917843 -19746510 + HAL1 LINE L1 1899 2330 -177 880 236 42 18 chr1 222918221 222918285 -19746068 - MER33 DNA MER1_type -2292 293 232 200 33 0 33 chr1 222918285 222918315 -19746038 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 1343 120 160 16 chr1 222918315 222918560 -19745793 - AluSx SINE Alu -21 281 1 880 236 42 18 chr1 222918560 222918783 -19745570 - MER33 DNA MER1_type -2352 233 3 195 100 0 0 chr1 222927204 222927234 -19737119 + (TC)n Simple_repeat Simple_repeat 2 31 0 287 219 104 24 chr1 222928148 222928312 -19736041 + (TAGGG)n Simple_repeat Simple_repeat 4 180 0 254 247 77 29 chr1 222928324 222928494 -19735859 + (TAGGG)n Simple_repeat Simple_repeat 3 180 0 319 196 77 48 chr1 222928558 222928726 -19735627 + (TAGGG)n Simple_repeat Simple_repeat 3 175 0 235 238 76 47 chr1 222928830 222929002 -19735351 + (TAGGG)n Simple_repeat Simple_repeat 3 179 0 203 252 88 19 chr1 222928962 222929121 -19735232 + (ATAGG)n Simple_repeat Simple_repeat 3 172 0 * 577 236 13 0 chr1 222931796 222931953 -19732400 + L1M3 LINE L1 5339 5497 -686 1606 186 3 10 chr1 222931955 222932245 -19732108 + AluJo SINE Alu 3 290 -22 310 100 40 0 chr1 222932257 222932307 -19732046 + L1MB3 LINE L1 6125 6176 -7 501 289 79 42 chr1 222933147 222933527 -19730826 - MLT1C LTR MaLR -14 453 60 298 232 31 71 chr1 222933594 222933728 -19730625 + MLT1E LTR MaLR 390 571 -22 1697 166 17 10 chr1 222933868 222934169 -19730184 - AluJo SINE Alu -9 303 1 289 175 16 16 chr1 222935271 222935334 -19729019 + FRAM SINE Alu 69 131 -35 423 98 0 0 chr1 222935336 222935397 -19728956 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 566 244 39 0 chr1 222935801 222935928 -19728425 + FLAM_C SINE Alu 2 133 0 455 249 53 30 chr1 222935938 222936107 -19728246 - Charlie4 DNA MER1_type -1726 235 63 264 184 0 0 chr1 222936971 222937020 -19727333 + L3 LINE CR1 1412 1460 -117 1215 133 52 24 chr1 222937855 222938066 -19726287 - AluJo SINE Alu -11 301 85 22 0 0 0 chr1 222938175 222938197 -19726156 + AT_rich Low_complexity Low_complexity 1 22 0 2296 95 0 3 chr1 222938199 222938505 -19725848 + AluSx SINE Alu 1 305 -7 201 343 39 29 chr1 222939245 222939347 -19725006 + L2 LINE L2 2959 3061 -252 223 235 10 41 chr1 222940200 222940298 -19724055 + G-rich Low_complexity Low_complexity 6 100 0 1172 221 90 0 chr1 222943182 222943449 -19720904 + MER21B LTR ERV1 7 297 -566 2298 91 0 3 chr1 222943558 222943867 -19720486 + AluY SINE Alu 1 308 -3 1607 203 171 39 chr1 222943892 222944360 -19719993 + MER21B LTR ERV1 303 832 -31 842 197 0 56 chr1 222944798 222944976 -19719377 + AluJb SINE Alu 122 289 -23 248 289 23 16 chr1 222945832 222945960 -19718393 + MER20B DNA MER1_type 264 392 -391 278 314 34 8 chr1 222948038 222948156 -19716197 - MLT1J LTR MaLR -350 161 41 352 313 41 0 chr1 222948925 222949072 -19715281 - Tigger8 DNA MER2_type -286 380 228 1527 199 7 3 chr1 222949495 222949782 -19714571 + AluJo SINE Alu 5 292 -20 2083 69 6 104 chr1 222950967 222951302 -19713051 + AluSx SINE Alu 3 304 -8 373 226 66 22 chr1 222952017 222952154 -19712199 - HAL1 LINE L1 -812 1695 1553 334 365 53 38 chr1 222952310 222952573 -19711780 - L1M4c LINE L1 -5321 1063 797 1047 139 139 0 chr1 222952757 222952959 -19711394 - MER30 DNA MER1_type 0 230 1 429 380 154 3 chr1 222953252 222953597 -19710756 + L1MC4 LINE L1 6897 7293 -749 180 0 0 0 chr1 222954610 222954630 -19709723 + (GGCTG)n Simple_repeat Simple_repeat 3 22 0 243 260 78 0 chr1 222956886 222956963 -19707390 - MER91A DNA MER1_type 0 196 114 1962 91 35 7 chr1 222957674 222957959 -19706394 + AluSq SINE Alu 5 297 -16 291 161 0 0 chr1 222958720 222958776 -19705577 + CT-rich Low_complexity Low_complexity 2 57 0 228 208 19 75 chr1 222960073 222960179 -19704174 + C-rich Low_complexity Low_complexity 6 105 0 2174 87 14 0 chr1 222960843 222961132 -19703221 + AluSx SINE Alu 1 293 -19 596 145 210 0 chr1 222961142 222961280 -19703073 + FRAM SINE Alu 1 167 -9 267 175 35 0 chr1 222961508 222961565 -19702788 + MLT1A1 LTR MaLR 72 130 -235 2213 217 22 10 chr1 222961680 222962169 -19702184 + LTR42 LTR ERVL 1 495 0 328 276 158 0 chr1 222962568 222962695 -19701658 - L2 LINE L2 -842 2472 2326 1885 145 3 41 chr1 222964457 222964774 -19699579 + AluJo SINE Alu 1 305 -7 259 255 102 41 chr1 222965778 222965876 -19698477 - MER5A DNA MER1_type -13 165 62 2574 91 25 107 chr1 222968203 222968566 -19695787 - MER4E LTR ERV1 0 766 375 2411 105 0 0 chr1 222968566 222968871 -19695482 + AluSg SINE Alu 5 309 -1 2574 91 25 107 chr1 222968871 222969077 -19695276 - MER4E LTR ERV1 -391 375 94 2293 85 7 10 chr1 222969077 222969372 -19694981 + AluSx SINE Alu 1 294 -18 2574 91 25 107 chr1 222969372 222969459 -19694894 - MER4E LTR ERV1 -672 94 1 2599 121 29 0 chr1 222969465 222969878 -19694475 - MER57B LTR ERV1 -9 425 1 9322 98 143 66 chr1 222969882 222971640 -19692713 - MER57B-int LTR ERV1 -4 7533 5640 2153 118 0 0 chr1 222971640 222971944 -19692409 - AluSg SINE Alu 0 304 1 1974 112 94 37 chr1 222972815 222973146 -19691207 - MER57B-int LTR ERV1 -1893 5644 5288 2051 151 0 10 chr1 222973146 222973445 -19690908 - AluSx SINE Alu -16 296 1 1974 112 94 37 chr1 222973445 222973487 -19690866 - MER57B-int LTR ERV1 -2249 5288 5250 5963 137 50 71 chr1 222973488 222973771 -19690582 - MER57B-int LTR ERV1 -1333 3584 3297 2310 111 3 3 chr1 222973771 222974078 -19690275 + AluSq SINE Alu 1 307 -6 1979 147 0 47 chr1 222974088 222974407 -19689946 + AluSx SINE Alu 1 304 -8 5963 137 50 71 chr1 222974407 222974487 -19689866 - MER57B-int LTR ERV1 -1629 3288 3208 2393 82 3 0 chr1 222974487 222974779 -19689574 + AluSp SINE Alu 1 293 -20 5963 137 50 71 chr1 222974779 222975348 -19689005 - MER57B-int LTR ERV1 -1709 3208 2628 180 0 0 0 chr1 222975348 222975368 -19688985 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 5963 137 50 71 chr1 222975368 222975969 -19688384 - MER57B-int LTR ERV1 -2289 2628 2016 2324 80 7 0 chr1 222975969 222976255 -19688098 - AluY SINE Alu -18 293 6 5963 137 50 71 chr1 222976255 222977857 -19686496 - MER57B-int LTR ERV1 -2901 2016 288 4199 133 29 1 chr1 222977851 222978504 -19685849 - MER57B-int LTR ERV1 -6862 675 5 * 2816 116 28 2 chr1 222978508 222978931 -19685422 - MER57B LTR ERV1 0 434 1 2534 198 87 7 chr1 222979210 222979861 -19684492 - MER21B LTR ERV1 -52 811 39 1640 214 165 19 chr1 222979863 222980401 -19683952 - LTR48B LTR ERV1 -23 621 5 333 291 22 15 chr1 222981029 222981163 -19683190 + MER87 LTR ERV1 407 541 0 3829 143 81 9 chr1 222981416 222982073 -19682280 + MER50 LTR ERV1 8 711 -23 1107 205 138 49 chr1 222982303 222982694 -19681659 - LTR47A LTR ERVL -26 426 1 453 212 33 53 chr1 222982898 222983049 -19681304 - MER54B LTR ERVL -546 247 100 311 261 22 104 chr1 222983148 222983282 -19681071 + LTR57-int LTR ERVL 303 425 -4918 * 341 208 0 14 chr1 222983221 222983293 -19681060 + MER57-int LTR ERV1 895 965 -5793 315 0 0 0 chr1 222983479 222983514 -19680839 + (A)n Simple_repeat Simple_repeat 1 35 0 1922 108 125 31 chr1 222984356 222984708 -19679645 - MSTA LTR MaLR -2 426 42 192 77 0 0 chr1 222984709 222984735 -19679618 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1698 211 0 6 chr1 222984737 222985049 -19679304 - AluJb SINE Alu -2 310 1 266 137 98 0 chr1 222985049 222985100 -19679253 - MSTA LTR MaLR -372 56 1 863 154 23 0 chr1 222985427 222985557 -19678796 - AluSq/x SINE Alu -179 133 1 384 315 36 60 chr1 222985727 222986061 -19678292 + MER57-int LTR ERV1 158 498 -6303 2530 64 0 0 chr1 222986061 222986358 -19677995 - AluY SINE Alu -14 297 1 384 315 36 60 chr1 222986358 222986442 -19677911 + MER57-int LTR ERV1 498 2706 -4095 2544 132 55 29 chr1 222986855 222987272 -19677081 + MSTC LTR MaLR 1 428 0 287 29 0 0 chr1 222987281 222987316 -19677037 - U2 snRNA snRNA -152 36 2 1410 184 12 4 chr1 222987403 222987653 -19676700 + AluJo SINE Alu 40 291 -21 2665 48 0 3 chr1 222987983 222988294 -19676059 - AluY SINE Alu -1 310 1 871 109 115 26 chr1 222988775 222988931 -19675422 - MSTC LTR MaLR -71 357 188 268 242 75 8 chr1 222989390 222989510 -19674843 + MER57-int LTR ERV1 1797 1924 -3012 1749 204 82 69 chr1 222989708 222989980 -19674373 + MER57-int LTR ERV1 2378 2645 -3686 1983 167 0 0 chr1 222989980 222990292 -19674061 - AluJb SINE Alu 0 312 1 1749 204 82 69 chr1 222990292 222990613 -19673740 + MER57-int LTR ERV1 2645 2960 -3371 1630 138 32 80 chr1 222990613 222990924 -19673429 + AluJb SINE Alu 1 296 -16 1749 204 82 69 chr1 222990924 222991269 -19673084 + MER57-int LTR ERV1 2960 4595 -1736 2218 135 11 11 chr1 222991278 222991627 -19672726 - MER21A LTR ERV1 -2 929 581 2236 117 7 0 chr1 222991643 222991951 -19672402 - AluSx SINE Alu -2 310 1 1781 165 159 92 chr1 222992347 222992893 -19671460 - MER21A LTR ERV1 -348 583 1 1696 190 62 27 chr1 222992903 222993308 -19671045 + MER57-int LTR ERV1 3307 3725 -1211 644 243 0 20 chr1 222993343 222993495 -19670858 + FRAM SINE Alu 25 173 -3 2206 240 90 56 chr1 222993505 222994396 -19669957 + MER57-int LTR ERV1 3254 4174 -697 2334 199 37 33 chr1 222994452 222994827 -19669526 + MER57-int LTR ERV1 6636 7015 -522 2308 109 23 0 chr1 222994827 222995129 -19669224 + AluSg SINE Alu 1 309 -1 2334 199 37 33 chr1 222995129 222995265 -19669088 + MER57-int LTR ERV1 7015 7149 -388 309 114 0 0 chr1 222995266 222995310 -19669043 + LTR54B LTR ERV1 8 51 -447 450 204 32 24 chr1 222995463 222995592 -19668761 - L1M4 LINE L1 -5715 931 611 2406 112 37 13 chr1 222995634 222996017 -19668336 - L1PB4 LINE L1 -1 6155 5764 332 171 8 3 chr1 222996027 222996108 -19668245 - L1M4 LINE L1 -365 5786 5724 1110 163 9 39 chr1 222996108 222996158 -19668195 - L1PB4 LINE L1 -380 5776 5726 2225 171 51 15 chr1 222996158 222996567 -19667786 + MSTB LTR MaLR 1 424 -2 1110 163 9 39 chr1 222996567 222996749 -19667604 - L1PB4 LINE L1 -430 5726 5551 17376 142 12 11 chr1 222996751 222997865 -19666488 - L1PA11 LINE L1 -1 7611 6499 2127 121 6 25 chr1 222997865 222998180 -19666173 - AluSc SINE Alu 0 309 1 17376 142 12 11 chr1 222998180 222999122 -19665231 - L1PA11 LINE L1 -1113 6499 5559 2151 127 0 7 chr1 222999122 222999421 -19664932 + AluSx SINE Alu 1 297 -15 17376 142 12 11 chr1 222999421 223001125 -19663228 - L1PA11 LINE L1 -2053 5559 3840 1138 248 25 25 chr1 223001417 223001739 -19662614 + L1PA12 LINE L1 502 823 -6758 1876 231 5 27 chr1 223001770 223002208 -19662145 - L1PA11 LINE L1 -7147 434 7 1422 109 43 0 chr1 223002208 223002438 -19661915 - L1P5 LINE L1 -594 5562 5323 2085 225 153 14 chr1 223002562 223003371 -19660982 - L1M4 LINE L1 -1734 4412 3491 1628 174 7 42 chr1 223003909 223004196 -19660157 - AluJb SINE Alu -16 296 20 21 36 0 0 chr1 223004201 223004229 -19660124 + AT_rich Low_complexity Low_complexity 1 28 0 575 297 102 23 chr1 223004292 223004595 -19659758 + MLT1A1 LTR MaLR 39 365 0 673 250 47 4 chr1 223004603 223004835 -19659518 + MER89 LTR ERV1 318 559 0 582 297 55 0 chr1 223004835 223005054 -19659299 - L1M4 LINE L1 -471 5693 5463 201 94 0 0 chr1 223005429 223005461 -19658892 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 323 217 0 76 chr1 223005569 223005753 -19658600 + G-rich Low_complexity Low_complexity 5 174 0 266 185 0 93 chr1 223005811 223005962 -19658391 + G-rich Low_complexity Low_complexity 1 137 0 221 259 0 80 chr1 223006097 223006259 -19658094 + G-rich Low_complexity Low_complexity 5 153 0 712 210 0 14 chr1 223006547 223006685 -19657668 + FRAM SINE Alu 25 160 -16 639 250 105 72 chr1 223006701 223006979 -19657374 - L1MD1 LINE L1 -47 6195 5897 2413 91 3 13 chr1 223006979 223007287 -19657066 + AluSx SINE Alu 1 305 -7 639 250 105 72 chr1 223007287 223007436 -19656917 - L1MD1 LINE L1 -345 5897 5754 1230 192 19 64 chr1 223007436 223007795 -19656558 + MLT1B LTR MaLR 1 343 -47 1710 232 47 8 chr1 223007809 223008211 -19656142 - L1MD1 LINE L1 -488 5754 5335 2237 115 3 16 chr1 223008211 223008523 -19655830 - AluSx SINE Alu -4 308 1 1710 232 47 8 chr1 223008523 223008574 -19655779 - L1MD1 LINE L1 -907 5335 5287 1777 160 56 0 chr1 223008580 223008868 -19655485 - AluJo SINE Alu -8 304 1 1685 263 81 9 chr1 223008900 223009481 -19654872 + MER82 DNA MER2_type 1 623 -30 594 293 12 8 chr1 223009512 223009677 -19654676 - L1MD1 LINE L1 -923 5223 5055 2189 92 3 22 chr1 223009677 223009992 -19654361 - AluSq SINE Alu -4 309 1 594 293 12 8 chr1 223009992 223010075 -19654278 - L1MD1 LINE L1 -1091 5055 4974 * 1566 219 39 7 chr1 223010062 223010472 -19653881 - L1MA4 LINE L1 -24 6276 5854 1348 120 0 0 chr1 223010474 223010657 -19653696 + AluY SINE Alu 1 183 -128 421 85 0 0 chr1 223010908 223010967 -19653386 + Alu SINE Alu 245 303 -7 429 158 0 75 chr1 223010967 223011062 -19653291 - L1MA4 LINE L1 -300 5863 5778 1818 129 11 0 chr1 223011062 223011333 -19653020 - AluSx SINE Alu -16 296 23 429 158 0 75 chr1 223011333 223011365 -19652988 - L1MA4 LINE L1 -385 5778 5745 4972 143 39 16 chr1 223011376 223012491 -19651862 - L1MA4 LINE L1 -743 5403 4340 1145 261 12 73 chr1 223012491 223012837 -19651516 - L1MD1 LINE L1 -1141 5005 4694 1833 130 0 63 chr1 223012837 223013187 -19651166 + AluJb SINE Alu 9 312 0 1145 261 12 73 chr1 223013187 223013319 -19651034 - L1MD1 LINE L1 -1452 4694 4556 1964 208 78 8 chr1 223014236 223014736 -19649617 - L1MB3 LINE L1 -2 6181 5647 756 216 0 0 chr1 223014737 223014871 -19649482 + FLAM_C SINE Alu 1 134 -9 1496 186 27 43 chr1 223014871 223015086 -19649267 - L1MB3 LINE L1 -525 5658 5450 1533 139 143 0 chr1 223015086 223015359 -19648994 - AluSx SINE Alu 0 312 1 1496 186 27 43 chr1 223015359 223015515 -19648838 - L1MB3 LINE L1 -733 5450 5293 336 156 128 28 chr1 223015506 223015615 -19648738 - L1M3 LINE L1 -405 5778 5659 * 675 362 102 42 chr1 223016117 223016336 -19648017 - L1MB3 LINE L1 -895 5251 5047 1758 167 0 4 chr1 223016336 223016617 -19647736 - AluJo SINE Alu -32 280 1 675 362 102 42 chr1 223016617 223017115 -19647238 - L1MB3 LINE L1 -1099 5047 4581 2727 10 0 0 chr1 223017115 223017418 -19646935 - AluYa5 SINE Alu -8 303 1 675 362 102 42 chr1 223017418 223017991 -19646362 - L1MB3 LINE L1 -1565 4581 3882 645 167 0 0 chr1 223018039 223018147 -19646206 + MSTB LTR MaLR 1 108 -318 462 283 50 6 chr1 223018178 223018337 -19646016 - Charlie1 DNA MER1_type -2595 166 1 1376 249 82 27 chr1 223018701 223019150 -19645203 + MLT2B2 LTR ERVL 3 476 -39 217 133 24 60 chr1 223019187 223019270 -19645083 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 256 161 0 36 chr1 223019313 223019369 -19644984 + MLT2C2 LTR ERVL 416 464 0 800 154 0 0 chr1 223019550 223019673 -19644680 - FLAM_C SINE Alu -20 123 1 483 265 88 56 chr1 223019742 223019957 -19644396 - L1M4 LINE L1 -944 6013 5792 2151 160 2 15 chr1 223019965 223020377 -19643976 - L1MB7 LINE L1 -179 6005 5599 1323 233 84 78 chr1 223020402 223020866 -19643487 - MLT1C LTR MaLR 0 467 1 310 289 96 10 chr1 223020968 223021072 -19643281 - L1M4 LINE L1 -1299 5658 5546 548 15 0 0 chr1 223021773 223021839 -19642514 - AluY SINE Alu -12 299 234 2321 98 0 0 chr1 223021930 223022235 -19642118 - AluY SINE Alu -6 305 1 367 247 0 0 chr1 223022747 223022840 -19641513 - L1M4 LINE L1 -4813 2146 2054 * 1789 232 81 37 chr1 223022835 223023951 -19640402 - L1M4 LINE L1 -5014 1841 663 2180 121 0 3 chr1 223024380 223024685 -19639668 + AluSg SINE Alu 3 306 -4 1989 170 30 55 chr1 223025136 223025516 -19638837 - L1MB3 LINE L1 0 6183 5817 2124 92 7 0 chr1 223025516 223025823 -19638530 + AluSq SINE Alu 1 309 0 1989 170 30 55 chr1 223025823 223025948 -19638405 - L1MB3 LINE L1 -366 5817 5690 801 165 0 8 chr1 223025948 223026075 -19638278 + FLAM_C SINE Alu 1 126 -17 768 162 7 0 chr1 223026092 223026234 -19638119 - L1MB3 LINE L1 -484 5699 5557 255 61 0 0 chr1 223026434 223026467 -19637886 + (T)n Simple_repeat Simple_repeat 1 33 0 1272 113 99 0 chr1 223026855 223027077 -19637276 + L1MA4 LINE L1 5694 5937 -363 514 142 38 19 chr1 223027077 223027166 -19637187 + L1MA9 LINE L1 6202 6309 -3 738 236 16 0 chr1 223027166 223027189 -19637164 + L1PB1 LINE L1 5942 5963 -188 867 190 11 0 chr1 223027349 223027528 -19636825 + L1MA4 LINE L1 5942 6122 -178 1019 220 5 9 chr1 223027528 223027746 -19636607 - MER8 DNA MER2_type -1 238 22 898 146 92 0 chr1 223027747 223027911 -19636442 + L1MA4 LINE L1 6116 6294 -6 969 204 13 26 chr1 223028120 223028346 -19636007 + AluJb SINE Alu 1 223 -89 438 92 0 0 chr1 223028531 223028596 -19635757 + L1MA9 LINE L1 6243 6307 -5 284 271 115 0 chr1 223028769 223028865 -19635488 - L1MD3 LINE L1 -171 7824 7718 236 309 122 36 chr1 223028921 223029060 -19635293 + MIR SINE MIR 80 230 -32 400 224 149 6 chr1 223030130 223030304 -19634049 + MLT1A1 LTR MaLR 1 199 -166 1695 157 3 17 chr1 223033359 223033659 -19630694 - AluJb SINE Alu -16 296 1 1031 86 0 0 chr1 223036109 223036249 -19628104 + AluSp/q SINE Alu 162 301 -12 1425 167 52 4 chr1 223036249 223036518 -19627835 - AluJb SINE Alu -30 282 1 265 188 25 0 chr1 223040895 223040975 -19623378 + (TG)n Simple_repeat Simple_repeat 1 82 0 1233 252 165 27 chr1 223050055 223050504 -19613849 - LTR64 LTR ERVK 0 513 3 1351 162 98 0 chr1 223050860 223051137 -19613216 - AluJb SINE Alu 0 329 30 258 309 0 0 chr1 223053151 223053232 -19611121 + MER63 DNA MER1_type 700 780 -56 1778 176 0 10 chr1 223053704 223054011 -19610342 - AluJo SINE Alu -8 304 1 2138 118 0 3 chr1 223054017 223054314 -19610039 - AluSx SINE Alu -16 296 1 573 265 59 9 chr1 223054320 223054539 -19609814 - L1ME2 LINE L1 0 6164 5935 2362 97 0 0 chr1 223054539 223054849 -19609504 - AluY SINE Alu 0 311 2 739 192 23 0 chr1 223054993 223055123 -19609230 + AluJo SINE Alu 5 137 -175 275 277 24 12 chr1 223055437 223055520 -19608833 - MIR SINE MIR -119 143 60 368 239 277 5 chr1 223055971 223056159 -19608194 + L1ME2 LINE L1 5906 6144 -20 1745 172 17 3 chr1 223056215 223056505 -19607848 - AluJb SINE Alu -18 294 1 592 279 87 67 chr1 223057494 223058000 -19606353 - MLT1H1 LTR MaLR -8 547 32 347 256 77 17 chr1 223058063 223058180 -19606173 - MLT1L LTR MaLR -145 470 347 2114 188 36 47 chr1 223058229 223058777 -19605576 - MLT1E3 LTR MaLR -4 620 79 1266 221 111 31 chr1 223059163 223059588 -19604765 + MLT1C LTR MaLR 9 467 0 300 151 0 0 chr1 223059589 223059642 -19604711 + MIR SINE MIR 104 156 -106 246 244 35 35 chr1 223059900 223059986 -19604367 + MIR SINE MIR 117 202 -60 1712 186 69 23 chr1 223060191 223060540 -19603813 - MLT1A1 LTR MaLR 0 365 1 666 226 49 37 chr1 223060683 223060926 -19603427 + MLT1A1 LTR MaLR 12 257 -108 1952 153 0 16 chr1 223060926 223061233 -19603120 - AluJo SINE Alu -10 302 1 3529 184 36 8 chr1 223061241 223061903 -19602450 - L1MB7 LINE L1 -16 6666 5986 1801 168 30 0 chr1 223061907 223062205 -19602148 - AluJo SINE Alu 0 312 6 345 200 200 20 chr1 223062205 223062305 -19602048 - L1MB7 LINE L1 -878 5766 5649 1026 170 0 6 chr1 223062305 223062470 -19601883 + AluJo SINE Alu 127 290 -22 3592 228 55 6 chr1 223062471 223063776 -19600577 - L1MB7 LINE L1 -984 5660 3148 1259 201 82 0 chr1 223063816 223064119 -19600234 + MER2 DNA MER2_type 18 345 0 780 277 61 0 chr1 223064119 223064447 -19599906 - L1MB7 LINE L1 -3493 3151 2804 1584 217 7 27 chr1 223064548 223064953 -19599400 - L1MB5 LINE L1 -1 6173 5777 2511 251 48 22 chr1 223064976 223065781 -19598572 - L1MB7 LINE L1 -5555 987 162 2116 301 113 12 chr1 223065818 223066939 -19597414 - L1MC3 LINE L1 -36 7749 6515 248 311 87 0 chr1 223067655 223067758 -19596595 - MER63 DNA MER1_type -98 738 1 240 259 0 0 chr1 223067975 223068056 -19596297 + (TG)n Simple_repeat Simple_repeat 1 81 0 540 337 0 0 chr1 223068163 223068329 -19596024 + (TG)n Simple_repeat Simple_repeat 1 166 0 518 278 75 60 chr1 223069332 223069598 -19594755 - HAL1 LINE L1 -1274 1233 964 274 275 77 19 chr1 223069772 223070028 -19594325 + MER74B LTR ERVL 124 457 -165 2043 142 7 0 chr1 223070237 223070547 -19593806 - AluJo SINE Alu 0 312 1 337 327 40 0 chr1 223070602 223070752 -19593601 + L1PB4 LINE L1 5865 6020 -136 306 215 15 0 chr1 223070754 223070819 -19593534 + L1PB4 LINE L1 6074 6139 -17 189 0 0 0 chr1 223070820 223070841 -19593512 + (CA)n Simple_repeat Simple_repeat 1 21 0 1636 97 4 4 chr1 223071136 223071364 -19592989 + AluSc SINE Alu 76 303 -6 292 239 0 60 chr1 223074338 223074714 -19589639 + (CACGT)n Simple_repeat Simple_repeat 1 353 0 633 287 20 16 chr1 223076037 223076284 -19588069 + L1MD2 LINE L1 5482 5729 -513 323 272 91 87 chr1 223076295 223076744 -19587609 + L1MD2 LINE L1 5780 6230 -12 180 0 0 0 chr1 223076749 223076769 -19587584 + (CAA)n Simple_repeat Simple_repeat 2 21 0 233 188 375 0 chr1 223077561 223077657 -19586696 - MER20 DNA MER1_type -41 178 47 592 278 98 6 chr1 223077675 223077848 -19586505 - MER53 DNA DNA 0 189 1 1543 160 153 0 chr1 223078255 223078517 -19585836 + AluJo SINE Alu 1 302 0 2532 190 35 16 chr1 223078517 223078679 -19585674 + L1MC1 LINE L1 5665 5823 -521 2336 64 0 14 chr1 223078679 223078976 -19585377 + AluSg SINE Alu 1 293 -17 2532 190 35 16 chr1 223078976 223079439 -19584914 + L1MC1 LINE L1 5823 6333 -11 1912 179 32 25 chr1 223080416 223080823 -19583530 - Tigger2a DNA MER2_type 0 434 25 559 253 114 35 chr1 223081131 223081229 -19583124 - MER58A DNA MER1_type -2199 221 132 2357 92 0 0 chr1 223081229 223081533 -19582820 + AluSq SINE Alu 1 304 -9 559 253 114 35 chr1 223081533 223081636 -19582717 - MER58A DNA MER1_type -2288 132 4 628 241 165 27 chr1 223081639 223082008 -19582345 + HAL1 LINE L1 1328 1747 -760 22 56 0 0 chr1 223082784 223082820 -19581533 + GC_rich Low_complexity Low_complexity 1 36 0 880 210 95 12 chr1 223083499 223083730 -19580623 - L1MB3 LINE L1 -107 6076 5823 1491 134 120 21 chr1 223083730 223084014 -19580339 - AluJo SINE Alu 0 312 1 880 210 95 12 chr1 223084014 223084025 -19580328 - L1MB3 LINE L1 -360 5823 5814 925 178 16 16 chr1 223084401 223084586 -19579767 - MER31A LTR ERV1 -300 185 1 1831 199 14 3 chr1 223086430 223086797 -19577556 + MLT1B LTR MaLR 9 379 -11 296 125 18 0 chr1 223086878 223086934 -19577419 - MLT2B2 LTR ERVL 0 515 459 277 167 0 0 chr1 223086972 223087020 -19577333 + MLT2C2 LTR ERVL 194 241 -223 1754 156 24 0 chr1 223087033 223087321 -19577032 - AluJb SINE Alu -17 295 1 868 225 14 0 chr1 223087321 223087534 -19576819 + MLT2B1 LTR ERVL 1 216 -304 182 299 8 0 chr1 223088331 223088448 -19575905 + (CA)n Simple_repeat Simple_repeat 1 118 0 184 73 0 49 chr1 223089568 223089609 -19574744 + (CGGGGG)n Simple_repeat Simple_repeat 4 42 0 189 0 0 0 chr1 223090045 223090066 -19574287 + (TCC)n Simple_repeat Simple_repeat 2 22 0 34 42 0 0 chr1 223090145 223090193 -19574160 + GC_rich Low_complexity Low_complexity 1 48 0 187 228 18 18 chr1 223092483 223092540 -19571813 - L2 LINE L2 -227 3045 2989 1249 254 165 25 chr1 223094448 223094896 -19569457 - LTR64 LTR ERVK 0 513 3 1351 162 98 0 chr1 223095252 223095529 -19568824 - AluJb SINE Alu 0 329 30 258 309 0 0 chr1 223097543 223097624 -19566729 + MER63 DNA MER1_type 699 779 -282 1794 173 0 10 chr1 223098096 223098403 -19565950 - AluJo SINE Alu -8 304 1 2138 118 0 3 chr1 223098409 223098706 -19565647 - AluSx SINE Alu -16 296 1 573 265 59 9 chr1 223098712 223098931 -19565422 - L1ME2 LINE L1 0 6164 5935 2362 97 0 0 chr1 223098931 223099241 -19565112 - AluY SINE Alu 0 311 2 739 192 23 0 chr1 223099385 223099515 -19564838 + AluJo SINE Alu 5 137 -175 290 265 24 12 chr1 223099829 223099912 -19564441 - MIR SINE MIR -119 143 60 368 239 277 5 chr1 223100363 223100551 -19563802 + L1ME2 LINE L1 5906 6144 -20 1721 176 17 3 chr1 223100607 223100897 -19563456 - AluJb SINE Alu -18 294 1 592 279 87 67 chr1 223101886 223102392 -19561961 - MLT1H1 LTR MaLR -8 547 32 347 256 77 17 chr1 223102455 223102572 -19561781 - MLT1L LTR MaLR -145 470 347 2131 186 36 47 chr1 223102621 223103169 -19561184 - MLT1E3 LTR MaLR -4 620 79 1266 221 111 31 chr1 223103555 223103980 -19560373 + MLT1C LTR MaLR 9 467 0 300 151 0 0 chr1 223103981 223104034 -19560319 + MIR SINE MIR 104 156 -106 246 244 35 35 chr1 223104292 223104378 -19559975 + MIR SINE MIR 117 202 -60 1690 183 69 23 chr1 223104583 223104932 -19559421 - MLT1A1 LTR MaLR 0 365 1 666 226 49 37 chr1 223105075 223105318 -19559035 + MLT1A1 LTR MaLR 12 257 -108 1952 153 0 16 chr1 223105318 223105625 -19558728 - AluJo SINE Alu -10 302 1 3549 181 36 8 chr1 223105633 223106295 -19558058 - L1MB7 LINE L1 -16 6666 5986 1839 168 30 0 chr1 223106299 223106602 -19557751 - AluJb SINE Alu 0 312 1 333 183 215 21 chr1 223106604 223106697 -19557656 - L1MB7 LINE L1 -885 5759 5649 1008 176 0 6 chr1 223106697 223106862 -19557491 + AluJo SINE Alu 127 290 -22 3610 210 55 1 chr1 223106864 223107788 -19556565 - L1MB7 LINE L1 -984 5660 4687 1242 229 68 3 chr1 223107797 223108164 -19556189 - L1MB7 LINE L1 -3106 3538 3148 1259 201 82 0 chr1 223108204 223108507 -19555846 + MER2 DNA MER2_type 18 345 0 762 281 83 5 chr1 223108507 223108920 -19555433 - L1MB7 LINE L1 -3493 3151 2699 1666 217 7 27 chr1 223108932 223109337 -19555016 - L1MB5 LINE L1 -1 6173 5777 3264 244 40 24 chr1 223109358 223110324 -19554029 - L1MB7 LINE L1 -5556 986 5 4148 250 61 43 chr1 223110334 223111214 -19553139 - L1MDa LINE L1 -2301 4239 3376 2420 101 0 3 chr1 223111214 223111520 -19552833 - AluSx SINE Alu -7 305 1 4148 250 61 43 chr1 223111520 223113057 -19551296 - L1MDa LINE L1 -3164 3376 1755 351 0 0 0 chr1 223113057 223113096 -19551257 + (CA)n Simple_repeat Simple_repeat 2 40 0 4148 250 61 43 chr1 223113096 223113855 -19550498 - L1MDa LINE L1 -4785 1755 1011 2113 104 13 60 chr1 223114298 223114474 -19549879 - AluSx SINE Alu -9 303 147 2174 107 54 7 chr1 223114474 223114772 -19549581 - AluSx SINE Alu 0 312 1 2113 104 13 60 chr1 223114772 223114911 -19549442 - AluSx SINE Alu -165 147 3 341 270 0 11 chr1 223115503 223115592 -19548761 + (CA)n Simple_repeat Simple_repeat 1 88 0 382 257 11 0 chr1 223115605 223115780 -19548573 + (CA)n Simple_repeat Simple_repeat 1 177 0 232 249 30 0 chr1 223115841 223116006 -19548347 + (CA)n Simple_repeat Simple_repeat 2 171 0 514 238 0 53 chr1 223116012 223116201 -19548152 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2520 47 7 7 chr1 223117058 223117358 -19546995 + AluSc SINE Alu 5 304 -5 1529 167 80 80 chr1 223117523 223117936 -19546417 - LTR42 LTR ERVL 0 495 83 406 288 115 31 chr1 223118631 223118919 -19545434 + L1PB4 LINE L1 5660 5971 -185 * 2387 145 100 18 chr1 223118707 223119216 -19545137 + L1MA8 LINE L1 5738 6288 -3 589 287 58 34 chr1 223119234 223119682 -19544671 + L1MEc LINE L1 1270 1782 -794 358 324 103 5 chr1 223121127 223121331 -19543022 - MIR SINE MIR 0 262 39 491 305 26 33 chr1 223121337 223121760 -19542593 - L1MEc LINE L1 -4651 1745 1326 284 243 28 11 chr1 223122082 223122259 -19542094 + (CA)n Simple_repeat Simple_repeat 1 180 0 309 302 19 0 chr1 223122271 223122377 -19541976 + (CA)n Simple_repeat Simple_repeat 2 109 0 197 238 0 53 chr1 223122377 223122566 -19541787 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2456 67 7 3 chr1 223123423 223123723 -19540630 + AluY SINE Alu 5 305 -6 1540 165 80 80 chr1 223123888 223124301 -19540052 - LTR42 LTR ERVL 0 495 83 406 288 115 31 chr1 223124996 223125284 -19539069 + L1PB4 LINE L1 5660 5971 -185 * 2387 145 100 18 chr1 223125072 223125581 -19538772 + L1MA8 LINE L1 5738 6288 -3 579 289 58 34 chr1 223125599 223126047 -19538306 + L1MEc LINE L1 1270 1782 -794 497 226 137 39 chr1 223126966 223127170 -19537183 - MIR SINE MIR 0 262 39 409 337 17 26 chr1 223127182 223127600 -19536753 - L1MEc LINE L1 -4657 1739 1326 358 324 103 5 chr1 223128084 223128288 -19536065 - MIR SINE MIR 0 262 39 524 300 26 33 chr1 223128294 223128717 -19535636 - L1MEc LINE L1 -4651 1745 1326 416 315 108 5 chr1 223129200 223129403 -19534950 - MIR SINE MIR 0 262 39 448 290 35 50 chr1 223129412 223129836 -19534517 - L1MEc LINE L1 -4656 1740 1323 1962 116 58 71 chr1 223131024 223131404 -19532949 - THE1C LTR MaLR 0 375 1 846 316 83 35 chr1 223131681 223132114 -19532239 + L1M4 LINE L1 3341 3794 -2352 1415 153 9 114 chr1 223132129 223132463 -19531890 + AluJo SINE Alu 3 301 -1 407 283 70 35 chr1 223132488 223132774 -19531579 + L1M4 LINE L1 4934 5229 -917 18343 76 17 0 chr1 223134073 223136495 -19527858 - HERVL LTR ERVL -426 5228 2765 25 0 0 0 chr1 223136556 223136581 -19527772 + AT_rich Low_complexity Low_complexity 1 25 0 452 353 107 11 chr1 223136731 223137003 -19527350 + L1M4 LINE L1 3343 3640 -2506 1655 137 0 85 chr1 223137005 223137340 -19527013 - AluJb SINE Alu 0 309 1 337 303 98 69 chr1 223137341 223138090 -19526263 + L1P LINE L1 3631 4400 -1746 895 317 48 80 chr1 223138272 223138505 -19525848 + L1M4 LINE L1 4695 4934 -1212 2433 65 0 29 chr1 223138505 223138815 -19525538 - AluY SINE Alu -10 301 1 895 317 48 80 chr1 223138815 223139183 -19525170 + L1M4 LINE L1 4934 5277 -869 2258 110 21 0 chr1 223139196 223139523 -19524830 + MER1B DNA MER1_type 4 337 -2 295 249 34 18 chr1 223142186 223142310 -19522043 - MIR SINE MIR -61 147 23 1123 103 0 0 chr1 223143067 223143234 -19521119 + FRAM SINE Alu 19 185 0 647 324 61 18 chr1 223143473 223143967 -19520386 + L1M4 LINE L1 3426 3940 -2206 642 144 0 0 chr1 223144006 223144096 -19520257 + AluJ/FLAM SINE Alu 2 91 -221 2142 141 20 0 chr1 223145182 223145488 -19518865 - AluSx SINE Alu 0 312 1 2045 124 0 30 chr1 223146007 223146305 -19518048 - AluSx SINE Alu -23 289 1 744 286 103 67 chr1 223146310 223147415 -19516938 + L1M4 LINE L1 3362 4506 -1640 282 274 131 40 chr1 223147715 223148043 -19516310 + L1M4 LINE L1 4885 5242 -904 1840 166 13 16 chr1 223148106 223148419 -19515934 + AluJo SINE Alu 1 312 0 350 282 98 87 chr1 223150321 223150606 -19513747 + L1M4 LINE L1 3359 3639 -2507 1933 166 0 10 chr1 223150606 223150920 -19513433 + AluJo SINE Alu 1 311 -1 350 282 98 87 chr1 223150920 223151738 -19512615 + L1M4 LINE L1 3639 4478 -1668 1876 151 0 20 chr1 223151738 223152037 -19512316 - AluJo SINE Alu -19 293 1 350 282 98 87 chr1 223152037 223152111 -19512242 + L1M4 LINE L1 4478 4550 -1596 250 280 133 36 chr1 223152546 223152878 -19511475 + L1M4 LINE L1 5011 5374 -772 26 0 0 0 chr1 223154802 223154828 -19509525 + GC_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr1 223154946 223154969 -19509384 + (A)n Simple_repeat Simple_repeat 1 23 0 359 275 87 105 chr1 223155487 223156029 -19508324 + L1M4 LINE L1 3589 4120 -2026 379 333 0 23 chr1 223160873 223161050 -19503303 + G-rich Low_complexity Low_complexity 4 176 0 229 258 0 43 chr1 223167711 223167804 -19496549 + (CTGGGG)n Simple_repeat Simple_repeat 4 92 0 2540 135 53 26 chr1 223168958 223169373 -19494980 - MSTC LTR MaLR -2 426 1 2107 93 4 0 chr1 223169864 223170143 -19494210 + AluSg SINE Alu 1 280 -30 216 0 0 0 chr1 223170147 223170171 -19494182 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 366 206 47 9 chr1 223172135 223172242 -19492111 - MLT1B LTR MaLR -188 202 92 225 245 0 57 chr1 223174139 223174245 -19490108 + G-rich Low_complexity Low_complexity 2 101 0 186 43 0 0 chr1 223174607 223174630 -19489723 + (GCGTG)n Simple_repeat Simple_repeat 1 23 0 1755 151 31 10 chr1 223175767 223176058 -19488295 + AluJo SINE Alu 1 297 -15 599 193 52 22 chr1 223180342 223180628 -19483725 - MLT1B LTR MaLR -16 374 1 1342 246 48 3 chr1 223180628 223180981 -19483372 - MLT1B-int LTR MaLR 0 1735 1367 1384 209 19 0 chr1 223180993 223181261 -19483092 + AluJo SINE Alu 10 282 -30 228 188 174 0 chr1 223181426 223181495 -19482858 - MLT1B-int LTR MaLR -975 760 680 2627 208 40 15 chr1 223181557 223182295 -19482058 - MLT1B-int LTR MaLR -487 884 2 1312 178 38 0 chr1 223182310 223182602 -19481751 - MLT1B LTR MaLR -86 304 2 182 37 37 0 chr1 223182956 223182983 -19481370 + (GA)n Simple_repeat Simple_repeat 1 28 0 1631 175 121 22 chr1 223185416 223185771 -19478582 - MLT1B LTR MaLR 0 390 1 1392 251 50 0 chr1 223185772 223186131 -19478222 - MLT1B-int LTR MaLR -1 1370 994 2518 235 30 10 chr1 223186379 223187133 -19477220 - MLT1B-int LTR MaLR -484 887 1 2035 171 45 5 chr1 223187133 223187508 -19476845 - MLT1B LTR MaLR 0 390 1 651 147 37 0 chr1 223193576 223193739 -19470614 + (TCCA)n Simple_repeat Simple_repeat 1 169 0 204 213 83 65 chr1 223194158 223194266 -19470087 + L3 LINE CR1 1381 1490 -87 648 192 45 0 chr1 223195004 223195629 -19468724 + (TCCA)n Simple_repeat Simple_repeat 1 652 0 193 233 0 0 chr1 223196844 223196887 -19467466 - L3 LINE CR1 -109 1468 1426 1092 227 142 0 chr1 223197327 223197574 -19466779 - AluSx SINE Alu -30 282 1 1878 231 167 43 chr1 223197602 223198322 -19466031 - MER21B LTR ERV1 -2 861 53 579 196 11 17 chr1 223204124 223204303 -19460050 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 859 114 29 0 chr1 223204346 223204521 -19459832 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 849 206 12 8 chr1 223204540 223205025 -19459328 + (TCCA)n Simple_repeat Simple_repeat 1 487 0 200 283 0 0 chr1 223205025 223205078 -19459275 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 378 223 29 12 chr1 223205091 223205515 -19458838 + (TCCA)n Simple_repeat Simple_repeat 1 431 0 185 196 22 0 chr1 223205610 223205656 -19458697 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 274 261 14 0 chr1 223205717 223205855 -19458498 + (TCCA)n Simple_repeat Simple_repeat 4 143 0 539 312 0 7 chr1 223207199 223207337 -19457016 + MIR SINE MIR 17 153 -109 1194 202 9 4 chr1 223207338 223207571 -19456782 + MER8 DNA MER2_type 1 234 -5 2231 254 83 10 chr1 223208839 223209528 -19454825 + MER21B LTR ERV1 1 739 -124 797 249 28 19 chr1 223209558 223209771 -19454582 + MIR SINE MIR 26 240 -22 3205 223 29 19 chr1 223210012 223211584 -19452769 + L1MD2 LINE L1 4265 5855 -504 834 216 12 57 chr1 223211575 223211820 -19452533 + L1MD2 LINE L1 6111 6344 -15 * 918 274 87 5 chr1 223211829 223212208 -19452145 - L1MEc LINE L1 -4542 1854 1445 3728 164 55 33 chr1 223212212 223213189 -19451164 - L1MB7 LINE L1 -30 6154 5156 1285 158 5 19 chr1 223213189 223213398 -19450955 - AluJo SINE Alu -22 290 85 458 171 0 0 chr1 223213398 223213468 -19450885 - FRAM SINE Alu -62 114 45 2060 207 47 23 chr1 223213468 223214023 -19450330 - L1MB7 LINE L1 -979 5167 4600 2632 257 129 25 chr1 223214043 223215211 -19449142 - L1MEc LINE L1 -4961 1435 146 1925 137 0 27 chr1 223215216 223215508 -19448845 + AluJb SINE Alu 13 296 -16 4212 123 26 24 chr1 223215569 223215750 -19448603 - L1PB1 LINE L1 -1 6150 5971 2165 88 41 0 chr1 223215750 223216044 -19448309 - AluY SINE Alu -5 306 1 4212 123 26 24 chr1 223216044 223216229 -19448124 - L1PB1 LINE L1 -180 5971 5788 441 0 0 0 chr1 223216229 223216278 -19448075 + (TA)n Simple_repeat Simple_repeat 1 49 0 4212 123 26 24 chr1 223216278 223216665 -19447688 - L1PB1 LINE L1 -363 5788 5394 2175 74 10 20 chr1 223216771 223217099 -19447254 + AluY SINE Alu 1 311 0 447 184 217 26 chr1 223217113 223217265 -19447088 - MLT1A1 LTR MaLR -181 184 4 229 250 0 50 chr1 223217268 223217348 -19447005 - L1MEc LINE L1 -6312 84 9 205 200 36 0 chr1 223220120 223220175 -19444178 + (TGGG)n Simple_repeat Simple_repeat 1 57 0 261 140 40 0 chr1 223222675 223222725 -19441628 - L3 LINE CR1 -117 1460 1409 210 344 159 5 chr1 223229339 223229528 -19434825 - MIR SINE MIR -29 233 16 223 296 102 0 chr1 223229850 223229938 -19434415 - MIR SINE MIR -59 203 107 246 237 51 0 chr1 223230463 223230522 -19433831 + MIR SINE MIR 110 171 -91 217 297 16 0 chr1 223230561 223230625 -19433728 - L3 LINE CR1 -118 1459 1395 302 341 0 0 chr1 223231051 223231139 -19433214 + MIR3 SINE MIR 89 176 -32 733 191 72 72 chr1 223231143 223231302 -19433051 - MER3 DNA MER1_type 0 209 48 2144 104 7 0 chr1 223231302 223231600 -19432753 - AluSq SINE Alu -12 301 2 733 191 72 72 chr1 223231600 223231649 -19432704 - MER3 DNA MER1_type -160 49 1 211 390 34 17 chr1 223232408 223232526 -19431827 - MIR3 SINE MIR -31 177 58 274 361 0 0 chr1 223233211 223233294 -19431059 + (TG)n Simple_repeat Simple_repeat 2 84 0 270 302 111 24 chr1 223234274 223234400 -19429953 - L3 LINE CR1 -34 1543 1407 400 227 119 113 chr1 223235445 223235563 -19428790 + MER3 DNA MER1_type 14 135 -74 1667 177 3 30 chr1 223235563 223235868 -19428485 - AluJb SINE Alu -15 297 1 400 227 119 113 chr1 223235868 223235943 -19428410 + MER3 DNA MER1_type 135 208 -1 487 336 102 40 chr1 223237422 223237969 -19426384 + L1MEc LINE L1 859 1439 -4957 345 369 74 15 chr1 223238559 223238830 -19425523 - L1M4c LINE L1 -5160 1224 938 216 97 0 0 chr1 223239462 223239493 -19424860 + (CA)n Simple_repeat Simple_repeat 2 32 0 1388 179 99 0 chr1 223239499 223239761 -19424592 - AluJb SINE Alu -24 288 1 23 0 0 0 chr1 223239764 223239787 -19424566 + AT_rich Low_complexity Low_complexity 1 23 0 322 309 112 0 chr1 223239793 223239945 -19424408 + L2 LINE L2 1731 1899 -1415 558 258 127 28 chr1 223240199 223240490 -19423863 + LTR40b LTR ERVL 140 459 -3 254 294 15 0 chr1 223241300 223241368 -19422985 + HERVL40 LTR ERVL 3272 3340 -2190 3972 152 14 5 chr1 223241585 223242230 -19422123 + MER39B LTR ERV1 1 651 -2 361 258 17 24 chr1 223243673 223244088 -19420265 + (TATG)n Simple_repeat Simple_repeat 1 412 0 212 246 17 29 chr1 223244103 223244278 -19420075 + (TATG)n Simple_repeat Simple_repeat 2 174 0 389 258 11 54 chr1 223244291 223244477 -19419876 + (TATG)n Simple_repeat Simple_repeat 3 180 0 470 339 131 39 chr1 223244605 223245252 -19419101 + L2 LINE L2 2048 2754 -560 1062 298 72 25 chr1 223245290 223245737 -19418616 + MER77 LTR ERV1 77 544 -61 298 359 13 22 chr1 223248605 223248862 -19415491 + (TATG)n Simple_repeat Simple_repeat 1 254 0 369 0 0 0 chr1 223249162 223249203 -19415150 + (TG)n Simple_repeat Simple_repeat 1 41 0 25 31 0 0 chr1 223250974 223251006 -19413347 + GC_rich Low_complexity Low_complexity 1 32 0 1666 166 0 28 chr1 223254384 223254673 -19409680 + AluJo SINE Alu 14 294 -18 287 204 9 35 chr1 223254834 223254947 -19409406 + CT-rich Low_complexity Low_complexity 1 110 0 212 242 132 33 chr1 223255026 223255117 -19409236 - MIR3 SINE MIR -21 187 88 266 278 33 0 chr1 223261806 223261896 -19402457 + MER117 DNA MER1_type 90 182 -15 484 307 87 24 chr1 223265424 223265678 -19398675 + MER90 LTR ERV1 345 614 0 1604 131 74 25 chr1 223265826 223266109 -19398244 + AluJo SINE Alu 1 297 -15 1126 192 19 53 chr1 223266281 223266697 -19397656 - MER39 LTR ERV1 -1 706 260 426 176 0 0 chr1 223266702 223266776 -19397577 - MER39 LTR ERV1 -633 74 1 1970 212 56 23 chr1 223266777 223267292 -19397061 - L1MD1 LINE L1 -106 6136 5605 686 250 0 55 chr1 223267288 223267489 -19396864 - L1MD1 LINE L1 -768 5378 5190 * 1823 154 0 27 chr1 223267489 223267787 -19396566 - AluJo SINE Alu -17 295 6 686 250 0 55 chr1 223267787 223267821 -19396532 - L1MD1 LINE L1 -956 5190 5156 1329 178 54 33 chr1 223267826 223267885 -19396468 - L1MB3 LINE L1 -2 6181 6125 2288 96 0 3 chr1 223267885 223268187 -19396166 - AluSx SINE Alu -11 301 1 1329 178 54 33 chr1 223268187 223268459 -19395894 - L1MB3 LINE L1 -58 6125 5843 3131 174 113 17 chr1 223268981 223269727 -19394626 - MER21B LTR ERV1 -18 845 29 312 48 0 0 chr1 223269728 223269770 -19394583 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 559 395 51 42 chr1 223269774 223270245 -19394108 + L1M4 LINE L1 2461 2935 -3211 432 330 63 72 chr1 223270577 223271052 -19393301 + L1MEd LINE L1 712 1182 -4937 567 238 95 14 chr1 223271063 223271273 -19393080 + L1MEd LINE L1 2736 2962 -3167 * 1912 249 70 10 chr1 223271270 223271957 -19392396 + L1M2 LINE L1 1893 2620 -4229 1020 206 43 0 chr1 223271959 223272236 -19392117 + L1M2 LINE L1 3188 3476 -3372 614 286 9 0 chr1 223272240 223272453 -19391900 + L1MEd LINE L1 2424 2638 -3491 2154 125 3 0 chr1 223272455 223272760 -19391593 - AluSq SINE Alu -7 306 1 1806 236 45 27 chr1 223272767 223273290 -19391063 + MER74B LTR ERVL 1 538 -84 2065 128 23 0 chr1 223273290 223273594 -19390759 - AluSx SINE Alu -1 311 1 1806 236 45 27 chr1 223273594 223273664 -19390689 + MER74B LTR ERVL 538 605 -17 1224 239 62 8 chr1 223273685 223274053 -19390300 + L1MEd LINE L1 2634 3021 -3108 2188 119 0 0 chr1 223274058 223274361 -19389992 + AluSq SINE Alu 11 313 0 2083 111 7 3 chr1 223274374 223274671 -19389682 + AluSx SINE Alu 13 310 -2 330 107 0 0 chr1 223274692 223274748 -19389605 - AluSc SINE Alu -7 292 237 261 140 40 0 chr1 223276524 223276574 -19387779 - L3 LINE CR1 -117 1460 1409 1910 153 0 7 chr1 223282921 223283228 -19381125 + AluJo SINE Alu 1 305 -7 2148 92 3 10 chr1 223285006 223285300 -19379053 - AluSc SINE Alu -17 292 1 263 248 0 27 chr1 223285300 223285330 -19379023 + L1MEd LINE L1 3042 3071 -3058 915 207 0 18 chr1 223285330 223285499 -19378854 + FRAM SINE Alu 1 166 0 1597 166 0 107 chr1 223285509 223285846 -19378507 + AluJb SINE Alu 1 301 -1 263 248 0 27 chr1 223285846 223285953 -19378400 + L1MEd LINE L1 3080 3186 -2943 2015 123 10 0 chr1 223285954 223286246 -19378107 + AluSg SINE Alu 1 295 -15 549 288 66 3 chr1 223286275 223286563 -19377790 + L1MEd LINE L1 3366 3671 -2458 616 171 36 0 chr1 223286585 223286696 -19377657 + FLAM_C SINE Alu 11 125 -18 284 340 105 6 chr1 223286696 223286858 -19377495 + L1MEd LINE L1 3679 3856 -2273 * 323 276 92 7 chr1 223286856 223287008 -19377345 + L1MB7 LINE L1 6011 6175 -9 213 158 0 70 chr1 223287041 223287098 -19377255 + (CAGGG)n Simple_repeat Simple_repeat 3 55 0 547 175 24 8 chr1 223287750 223287876 -19376477 - MLT1A1 LTR MaLR -225 140 13 748 141 31 8 chr1 223288534 223288662 -19375691 + AluJo/FLAM SINE Alu 3 133 -169 1453 166 62 55 chr1 223288664 223288971 -19375382 + AluJb SINE Alu 1 309 -3 1719 142 0 36 chr1 223291260 223291569 -19372784 - AluJo SINE Alu -14 298 1 1760 234 87 87 chr1 223291754 223292539 -19371814 + MER21B LTR ERV1 21 805 -58 1557 235 42 11 chr1 223293428 223293806 -19370547 + MLT1B LTR MaLR 1 390 0 1525 179 14 14 chr1 223294108 223294388 -19369965 + AluJo SINE Alu 31 310 -2 325 227 124 0 chr1 223295531 223295628 -19368725 + L1PB4 LINE L1 6010 6118 -38 216 122 0 0 chr1 223295628 223295669 -19368684 + (A)n Simple_repeat Simple_repeat 1 41 0 1444 187 89 38 chr1 223298334 223298681 -19365672 + MLT1A1 LTR MaLR 1 365 0 195 269 75 0 chr1 223299078 223299145 -19365208 - MIR3 SINE MIR -134 74 3 2225 99 0 0 chr1 223299399 223299693 -19364660 - AluSx SINE Alu -18 294 1 953 235 153 68 chr1 223300243 223300741 -19363612 + MER34 LTR ERV1 3 542 0 23 0 0 0 chr1 223302328 223302351 -19362002 + GC_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr1 223302601 223302632 -19361721 + (T)n Simple_repeat Simple_repeat 1 31 0 284 284 30 22 chr1 223302771 223302905 -19361448 + G-rich Low_complexity Low_complexity 3 137 0 1048 173 30 5 chr1 223305812 223306014 -19358339 - AluJo SINE Alu -1 311 105 1370 201 42 0 chr1 223306250 223306557 -19357796 + MLT1B LTR MaLR 1 397 -70 746 171 186 0 chr1 223307207 223307347 -19357006 - AluJo/FRAM SINE Alu 0 302 137 1206 172 0 41 chr1 223307350 223307571 -19356782 - AluJo SINE Alu -16 296 85 329 186 0 0 chr1 223307572 223307631 -19356722 - FRAM SINE Alu -53 113 55 450 177 0 0 chr1 223307632 223307711 -19356642 + LTR54B LTR ERV1 20 98 -400 1487 193 84 1 chr1 223307751 223308201 -19356152 + LTR31 LTR ERV1 18 547 -72 1801 148 13 35 chr1 223308201 223308519 -19355834 + AluJo SINE Alu 1 311 -1 226 225 0 50 chr1 223308558 223308638 -19355715 + MER34B LTR ERV1 36 111 -454 2297 113 0 0 chr1 223308651 223308961 -19355392 + AluSq SINE Alu 1 310 -3 354 228 28 43 chr1 223309243 223309422 -19354931 + MER34 LTR ERV1 369 541 -1 846 269 48 9 chr1 223309730 223310154 -19354199 + MER34 LTR ERV1 4 532 -10 408 227 34 68 chr1 223311159 223311326 -19353027 + MER31B LTR ERV1 206 385 -100 193 288 6 6 chr1 223311532 223311692 -19352661 + (CA)n Simple_repeat Simple_repeat 1 160 0 205 264 35 35 chr1 223312700 223312787 -19351566 + G-rich Low_complexity Low_complexity 1 87 0 3859 135 11 2 chr1 223313136 223313764 -19350589 - MER41B LTR ERV1 0 635 2 263 297 69 10 chr1 223313816 223313917 -19350436 - MER34 LTR ERV1 -317 225 119 1710 111 60 23 chr1 223314238 223314571 -19349782 - MER4A LTR ERV1 0 664 261 549 133 11 0 chr1 223314571 223314661 -19349692 - MER4A LTR ERV1 -566 98 8 409 258 32 43 chr1 223314817 223315003 -19349350 + MER34 LTR ERV1 311 494 -48 21 36 0 0 chr1 223315419 223315447 -19348906 + AT_rich Low_complexity Low_complexity 1 28 0 1614 211 37 11 chr1 223315772 223316127 -19348226 + MLT1A1 LTR MaLR 1 364 -1 1264 252 97 9 chr1 223316132 223316316 -19348037 - MER34 LTR ERV1 -71 471 304 2006 110 10 41 chr1 223316316 223316629 -19347724 - AluSx SINE Alu 0 305 2 1264 252 97 9 chr1 223316629 223316866 -19347487 - MER34 LTR ERV1 -238 304 11 3148 85 16 0 chr1 223316872 223317297 -19347056 + LTR3 LTR ERVK 1 432 0 1789 161 0 28 chr1 223317526 223317811 -19346542 - AluJo SINE Alu -35 277 1 444 176 118 20 chr1 223318040 223318184 -19346169 - FLAM_A SINE Alu 0 154 1 903 167 20 0 chr1 223318450 223318600 -19345753 + FAM SINE Alu 1 47 -2 2139 91 43 0 chr1 223319724 223320000 -19344353 - AluSx SINE Alu -10 302 15 2393 80 0 32 chr1 223321418 223321729 -19342624 - AluSq SINE Alu -12 301 1 2595 46 0 10 chr1 223321739 223322041 -19342312 - AluY SINE Alu -12 299 1 970 162 5 50 chr1 223322174 223322372 -19341981 + MER34 LTR ERV1 27 215 -327 1386 158 41 60 chr1 223322379 223322696 -19341657 + MSTB1 LTR MaLR 21 331 -101 861 175 0 0 chr1 223322697 223322863 -19341490 + CT-rich Low_complexity Low_complexity 4 169 0 200 279 0 0 chr1 223322867 223322910 -19341443 + polypyrimidine Low_complexity Low_complexity 3 45 0 914 143 154 46 chr1 223322929 223323104 -19341249 - AluJb SINE Alu -118 194 1 1142 113 6 18 chr1 223323111 223323279 -19341074 - AluSg/x SINE Alu -10 300 135 617 161 18 27 chr1 223323279 223323391 -19340962 + MSTB1 LTR MaLR 322 432 0 411 86 0 0 chr1 223323391 223323449 -19340904 + MER34 LTR ERV1 211 268 -274 1346 179 32 7 chr1 223323491 223323770 -19340583 + MER34 LTR ERV1 257 542 0 1221 215 146 11 chr1 223323773 223323800 -19340553 + MER92B LTR ERV1 146 168 -468 2197 146 68 15 chr1 223323800 223324210 -19340143 - MSTB1 LTR MaLR 0 432 1 1221 215 146 11 chr1 223324210 223324615 -19339738 + MER92B LTR ERV1 168 636 0 247 224 17 0 chr1 223325625 223325683 -19338670 + L2 LINE L2 1642 1700 -1614 307 326 7 14 chr1 223325871 223326018 -19338335 + L2 LINE L2 1684 1829 -1485 900 220 20 40 chr1 223326599 223326662 -19337691 - Charlie4a DNA MER1_type -1468 493 430 2158 121 0 17 chr1 223326662 223326960 -19337393 - AluSx SINE Alu -19 293 1 900 220 20 40 chr1 223326960 223327196 -19337157 - Charlie4a DNA MER1_type -1531 430 200 460 167 123 0 chr1 223327204 223327318 -19337035 - L1MCa LINE L1 -4150 2414 2287 1895 146 17 17 chr1 223327321 223327622 -19336731 + AluJb SINE Alu 4 304 -8 655 258 78 37 chr1 223327822 223327940 -19336413 - L1MCa LINE L1 -5021 1024 912 1786 149 3 55 chr1 223327940 223328249 -19336104 + AluJo SINE Alu 1 293 -19 655 258 78 37 chr1 223328249 223328398 -19335955 - L1MCa LINE L1 -5133 912 746 5252 81 16 4 chr1 223328456 223329206 -19335147 + MER4E LTR ERV1 8 766 0 749 245 90 0 chr1 223329206 223329418 -19334935 - L1MCa LINE L1 -5320 725 495 623 124 0 10 chr1 223329429 223329526 -19334827 + MER4A LTR ERV1 3 98 -566 1891 97 3 77 chr1 223329526 223329899 -19334454 + MER4A LTR ERV1 261 664 0 430 278 64 5 chr1 223329899 223330086 -19334267 - L1MCa LINE L1 -5539 506 309 2379 89 0 0 chr1 223331719 223332012 -19332341 + AluSg SINE Alu 1 293 -17 1465 199 20 47 chr1 223332065 223332466 -19331887 - MLT1B LTR MaLR 0 390 1 593 290 114 50 chr1 223332574 223332848 -19331505 + MLT1F1 LTR MaLR 1 256 -311 2278 115 3 10 chr1 223332848 223333162 -19331191 + AluSx SINE Alu 1 312 0 593 290 114 50 chr1 223333162 223333398 -19330955 + MLT1F1 LTR MaLR 256 554 -13 1259 167 80 22 chr1 223335795 223336071 -19328282 + MLT1A1 LTR MaLR 1 292 -73 312 226 0 0 chr1 223336885 223336938 -19327415 + L1MC4 LINE L1 6651 6703 -1339 2208 88 3 20 chr1 223336951 223337247 -19327106 - AluY SINE Alu -20 291 1 413 196 33 0 chr1 223337520 223337612 -19326741 + MLT1A1 LTR MaLR 257 351 -14 2653 169 35 16 chr1 223339693 223340242 -19324111 - L1MB5 LINE L1 -6 6168 5610 2133 110 0 33 chr1 223340287 223340417 -19323936 + AluSx SINE Alu 14 147 -165 2103 92 3 70 chr1 223340417 223340733 -19323620 + AluSq SINE Alu 1 295 -18 2133 110 0 33 chr1 223340733 223340903 -19323450 + AluSx SINE Alu 147 304 -8 553 205 211 0 chr1 223340998 223341159 -19323194 + MER3 DNA MER1_type 1 195 -14 22 0 0 0 chr1 223341675 223341697 -19322656 + AT_rich Low_complexity Low_complexity 1 22 0 362 119 158 10 chr1 223341733 223341834 -19322519 + L1MA5A LINE L1 6174 6289 -8 25 0 0 0 chr1 223342963 223342988 -19321365 + GC_rich Low_complexity Low_complexity 1 25 0 261 0 0 0 chr1 223344219 223344248 -19320105 + (TG)n Simple_repeat Simple_repeat 1 29 0 2397 91 0 3 chr1 223344416 223344724 -19319629 - AluSc SINE Alu -2 307 1 2450 47 0 10 chr1 223345560 223345856 -19318497 - AluSc SINE Alu -16 293 1 24 53 0 0 chr1 223345859 223345897 -19318456 + AT_rich Low_complexity Low_complexity 1 38 0 594 242 177 80 chr1 223346006 223346790 -19317563 - Charlie2 DNA MER1_type -16 2846 1987 1446 206 77 6 chr1 223347816 223348180 -19316173 + L1MA4 LINE L1 5909 6298 -2 237 261 14 14 chr1 223350620 223350689 -19313664 + MER5A DNA MER1_type 38 106 -83 313 327 100 0 chr1 223350764 223350914 -19313439 + MIR SINE MIR 90 254 -8 219 252 114 61 chr1 223351015 223351146 -19313207 + L2 LINE L2 3133 3270 -2 2349 155 26 26 chr1 223351381 223351651 -19312702 + MER31A LTR ERV1 1 274 -211 1834 156 44 0 chr1 223351651 223352012 -19312341 - AluSx SINE Alu 0 373 1 2349 155 26 26 chr1 223352012 223352197 -19312156 + MER31A LTR ERV1 273 457 -28 992 247 14 28 chr1 223352474 223352659 -19311694 + MLT1A1 LTR MaLR 1 182 -183 3175 135 82 10 chr1 223352659 223353265 -19311088 - MER39B LTR ERV1 0 653 4 992 247 14 28 chr1 223353265 223353362 -19310991 + MLT1A1 LTR MaLR 182 279 -86 243 0 0 0 chr1 223353450 223353477 -19310876 + (TG)n Simple_repeat Simple_repeat 2 28 0 1511 132 0 5 chr1 223353477 223353689 -19310664 - AluJo SINE Alu -21 291 81 337 232 0 0 chr1 223353708 223353777 -19310576 + MLT1A1 LTR MaLR 306 374 0 266 203 0 14 chr1 223353851 223353920 -19310433 + GA-rich Low_complexity Low_complexity 2 69 0 204 327 0 0 chr1 223353931 223353983 -19310370 + polypurine Low_complexity Low_complexity 1 52 0 713 133 0 9 chr1 223354292 223354405 -19309948 + FLAM_C SINE Alu 7 118 -25 37 23 0 0 chr1 223355428 223355472 -19308881 + AT_rich Low_complexity Low_complexity 1 44 0 1398 154 8 39 chr1 223356801 223357060 -19307293 + AluJo SINE Alu 49 299 -13 2542 182 44 7 chr1 223357174 223357718 -19306635 + MER34B LTR ERV1 2 565 0 1995 153 22 73 chr1 223357897 223358281 -19306072 + Tigger2a DNA MER2_type 1 360 -2348 1707 166 28 28 chr1 223358281 223358571 -19305782 + AluJo SINE Alu 1 290 -22 1995 153 22 73 chr1 223358571 223358636 -19305717 + Tigger2a DNA MER2_type 360 427 -7 648 90 0 0 chr1 223358849 223358938 -19305415 - AluS SINE Alu -223 90 2 2323 89 20 3 chr1 223359402 223359705 -19304648 + AluY SINE Alu 1 308 -3 1251 199 8 19 chr1 223359716 223359982 -19304371 - MER74A LTR ERVL -23 535 273 358 165 0 76 chr1 223360006 223360085 -19304268 - MER21B LTR ERV1 -92 771 699 192 405 13 0 chr1 223360174 223360253 -19304100 + MIR3 SINE MIR 121 200 -8 792 191 22 87 chr1 223360319 223360549 -19303804 - MER74A LTR ERVL -343 215 1 2010 219 67 49 chr1 223360590 223361219 -19303134 + LTR48B LTR ERV1 3 642 -2 2400 73 33 0 chr1 223361334 223361637 -19302716 - AluSp SINE Alu 0 313 1 1763 195 23 21 chr1 223361819 223362208 -19302145 + MLT1B LTR MaLR 1 390 0 1506 128 6 86 chr1 223362208 223362554 -19301799 - MER4A LTR ERV1 -24 640 263 1868 151 0 24 chr1 223362959 223363283 -19301070 + AluJb SINE Alu 1 317 0 1615 136 169 76 chr1 223363413 223363781 -19300572 - MER4A LTR ERV1 -2 662 261 611 119 20 10 chr1 223363778 223363879 -19300474 - MER4A LTR ERV1 -561 103 2 * 195 42 0 0 chr1 223364271 223364295 -19300058 + (T)n Simple_repeat Simple_repeat 1 24 0 378 0 0 0 chr1 223365172 223365214 -19299139 + (CA)n Simple_repeat Simple_repeat 2 43 0 439 201 113 63 chr1 223365294 223365453 -19298900 - MER21B LTR ERV1 -1 862 696 273 29 0 0 chr1 223365506 223365540 -19298813 + (TG)n Simple_repeat Simple_repeat 2 35 0 241 367 25 0 chr1 223365547 223365626 -19298727 + MIR3 SINE MIR 120 200 -8 2201 162 41 25 chr1 223365664 223366102 -19298251 - MER65A LTR ERV1 0 445 1 2111 123 7 0 chr1 223366440 223366725 -19297628 + AluSx SINE Alu 1 287 -25 2166 121 0 57 chr1 223366811 223367142 -19297211 + AluSx SINE Alu 1 312 0 243 0 0 0 chr1 223367400 223367427 -19296926 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2579 132 85 8 chr1 223367615 223367920 -19296433 + MER39B LTR ERV1 5 360 -293 192 40 0 0 chr1 223367920 223367945 -19296408 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 2579 132 85 8 chr1 223367945 223368110 -19296243 + MER39B LTR ERV1 360 511 -142 2362 77 3 0 chr1 223368110 223368407 -19295946 + AluY SINE Alu 1 298 -13 2125 104 0 4 chr1 223368529 223368809 -19295544 - AluSc SINE Alu -30 279 1 235 184 102 0 chr1 223368816 223368865 -19295488 + MER39B LTR ERV1 600 653 0 662 189 23 11 chr1 223369103 223369278 -19295075 + CT-rich Low_complexity Low_complexity 1 177 0 207 0 0 0 chr1 223369296 223369319 -19295034 + (TC)n Simple_repeat Simple_repeat 1 23 0 1661 167 0 36 chr1 223369319 223369624 -19294729 - AluJo SINE Alu -18 294 1 2317 108 0 13 chr1 223369802 223369980 -19294373 - AluSx SINE Alu -1 311 137 2324 98 3 13 chr1 223369980 223370286 -19294067 - AluSc SINE Alu -6 303 1 2317 108 0 13 chr1 223370286 223370422 -19293931 - AluSx SINE Alu -175 137 1 2355 81 10 0 chr1 223370963 223371261 -19293092 - AluSc SINE Alu -8 301 1 227 254 95 0 chr1 223371493 223371556 -19292797 + MIR SINE MIR 180 248 -14 1295 181 43 126 chr1 223371706 223372047 -19292306 + MLT1C LTR MaLR 1 288 -179 5061 82 51 9 chr1 223372047 223372715 -19291638 - L1PA16 LINE L1 -9 6157 5443 207 0 0 0 chr1 223372715 223372738 -19291615 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5061 82 51 9 chr1 223372738 223373253 -19291100 - L1PA16 LINE L1 -723 5443 4951 1295 181 43 126 chr1 223373253 223373419 -19290934 + MLT1C LTR MaLR 288 466 -1 291 277 24 12 chr1 223373468 223373551 -19290802 + L2 LINE L2 3230 3313 0 571 236 77 90 chr1 223374594 223374933 -19289420 + MER34B LTR ERV1 23 408 -177 262 61 0 0 chr1 223374931 223374964 -19289389 + MER61A LTR ERV1 311 343 0 * 2719 162 43 145 chr1 223374964 223375794 -19288559 + MER21A LTR ERV1 70 738 -193 1712 155 19 32 chr1 223375794 223376110 -19288243 - AluJo SINE Alu 0 312 1 2719 162 43 145 chr1 223376110 223376263 -19288090 + MER21A LTR ERV1 738 905 -26 1040 219 75 23 chr1 223376320 223376738 -19287615 + MER67B LTR ERV1 165 658 -3 4287 165 47 54 chr1 223376739 223377667 -19286686 - MER49 LTR ERV1 -1 922 1 1424 224 16 32 chr1 223377964 223377984 -19286369 + MLT1A1 LTR MaLR 1 20 -345 3964 107 75 17 chr1 223377984 223378584 -19285769 + MER41B LTR ERV1 1 635 0 1424 224 16 32 chr1 223378584 223378934 -19285419 + MLT1A1 LTR MaLR 20 365 0 3192 163 70 37 chr1 223379014 223379725 -19284628 - L1MA8 LINE L1 -2 6289 5555 2310 88 0 7 chr1 223379798 223380094 -19284259 + AluSg SINE Alu 1 294 -16 1101 163 156 48 chr1 223380291 223380387 -19283966 + AluJo SINE Alu 2 86 -216 238 78 20 20 chr1 223380387 223380438 -19283915 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 1101 163 156 48 chr1 223380438 223380611 -19283742 + AluJo SINE Alu 86 300 -2 434 266 80 0 chr1 223382120 223382233 -19282120 - L2 LINE L2 -9 3304 3183 1687 149 3 86 chr1 223382486 223382684 -19281669 - L1M2 LINE L1 -705 5607 5461 1519 166 46 7 chr1 223382684 223382968 -19281385 - AluJb SINE Alu -7 305 11 1687 149 3 86 chr1 223382968 223383224 -19281129 - L1M2 LINE L1 -851 5461 5185 * 2443 154 132 71 chr1 223383220 223383856 -19280497 + L1MA9 LINE L1 5619 6293 -19 3506 117 6 6 chr1 223383856 223384384 -19279969 + MER41B LTR ERV1 1 528 -107 845 69 43 0 chr1 223384917 223385033 -19279320 + MER41B LTR ERV1 515 635 0 1457 154 71 25 chr1 223385222 223385502 -19278851 + AluJb SINE Alu 1 293 -19 2406 62 7 10 chr1 223386733 223387038 -19277315 + AluSg SINE Alu 2 305 -5 27 29 0 0 chr1 223388317 223388351 -19276002 + GC_rich Low_complexity Low_complexity 1 34 0 1425 159 51 27 chr1 223389909 223390166 -19274187 - AluJo SINE Alu -17 295 33 1483 185 18 4 chr1 223390243 223390524 -19273829 - MLT1A1 LTR MaLR -80 285 1 1528 185 106 83 chr1 223391619 223391704 -19272649 - MER34 LTR ERV1 0 542 460 1973 149 10 10 chr1 223391704 223392012 -19272341 + AluJo SINE Alu 1 308 -4 1528 185 106 83 chr1 223392012 223392045 -19272308 - MER34 LTR ERV1 -82 460 429 2255 106 3 0 chr1 223392045 223392338 -19272015 - AluSx SINE Alu -18 294 1 1528 185 106 83 chr1 223392338 223392651 -19271702 - MER34 LTR ERV1 -113 429 125 1964 135 14 10 chr1 223392651 223392948 -19271405 - AluJo SINE Alu -14 298 1 1528 185 106 83 chr1 223392948 223392985 -19271368 - MER34 LTR ERV1 -417 125 90 1749 120 0 0 chr1 223392985 223393218 -19271135 - AluSc SINE Alu -76 233 1 2425 79 7 3 chr1 223393218 223393521 -19270832 - AluSg SINE Alu -5 305 1 1528 185 106 83 chr1 223393521 223393578 -19270775 - MER34 LTR ERV1 -451 91 1 207 241 0 0 chr1 223394385 223394468 -19269885 + CT-rich Low_complexity Low_complexity 1 83 0 1461 212 106 14 chr1 223395631 223396075 -19268278 - MER31A LTR ERV1 0 485 1 204 376 10 0 chr1 223396230 223396331 -19268022 + L2 LINE L2 1895 1996 -1318 535 131 185 8 chr1 223396343 223396473 -19267880 - L1MA7 LINE L1 -29 6262 6110 460 161 0 43 chr1 223396473 223396566 -19267787 + MER8 DNA MER2_type 1 89 -150 2722 194 67 27 chr1 223396609 223397701 -19266652 - L1MB1 LINE L1 -77 6112 4972 219 316 122 59 chr1 223397871 223398175 -19266178 + L2 LINE L2 2368 2690 -624 690 272 17 26 chr1 223398186 223398459 -19265894 + L1MA9 LINE L1 6032 6291 0 378 227 183 18 chr1 223398460 223398731 -19265622 + L2 LINE L2 2708 3022 -291 12808 136 71 3 chr1 223399426 223401662 -19262691 - Tigger1 DNA MER2_type -1 2417 31 809 277 87 20 chr1 223401775 223402168 -19262185 - MER77 LTR ERV1 -10 595 177 489 213 39 24 chr1 223402231 223402358 -19261995 - MER77 LTR ERV1 -408 197 69 1341 189 82 13 chr1 223402414 223402720 -19261633 + MLT1A1 LTR MaLR 3 329 -36 505 140 242 8 chr1 223403391 223403524 -19260829 + MER4C LTR ERV1 291 655 -9 862 154 6 26 chr1 223403535 223403691 -19260662 - MLT1A1 LTR MaLR -211 154 2 229 171 132 26 chr1 223403691 223403765 -19260588 - MLT1D LTR MaLR -334 171 90 321 271 127 17 chr1 223403910 223404028 -19260325 - MIR SINE MIR -114 148 18 240 119 0 0 chr1 223404298 223404340 -19260013 - L1MA6 LINE L1 -3 6297 6256 311 123 49 99 chr1 223404523 223404604 -19259749 + MLT1B LTR MaLR 1 77 -390 * 1325 140 67 92 chr1 223404603 223404782 -19259571 - MER44D DNA MER2_type -1883 608 426 688 202 0 0 chr1 223404782 223404911 -19259442 + FLAM_A SINE Alu 4 132 -1 1325 140 67 92 chr1 223404911 223405045 -19259308 - MER44D DNA MER2_type -2065 426 33 1458 199 23 0 chr1 223405061 223405367 -19258986 + MLT1B LTR MaLR 76 388 -2 229 284 86 25 chr1 223405367 223405448 -19258905 - MER5A DNA MER1_type -38 151 66 661 258 68 9 chr1 223405540 223405761 -19258592 - MER106A DNA MER1_type -1 235 2 15324 49 0 9 chr1 223406271 223408236 -19256117 + L1P LINE L1 1 1948 -4198 655 12 24 0 chr1 223408236 223408320 -19256033 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 1751 158 4 25 chr1 223408328 223408606 -19255747 - AluJo SINE Alu -32 280 9 2005 162 25 30 chr1 223409552 223409917 -19254436 + MLT1A1 LTR MaLR 3 365 0 340 245 0 36 chr1 223409968 223410107 -19254246 + L1MC4 LINE L1 7908 8041 -1 2350 230 35 7 chr1 223410116 223410720 -19253633 + L1MC1 LINE L1 5711 6333 0 327 311 126 56 chr1 223411753 223412189 -19252164 - L1M4c LINE L1 -1206 1537 958 2141 124 0 7 chr1 223414779 223415070 -19249283 + AluSx SINE Alu 1 289 -23 1319 194 64 36 chr1 223415189 223415580 -19248773 + L1MA4 LINE L1 5809 6210 -90 1042 185 11 22 chr1 223415580 223415764 -19248589 - AluJo SINE Alu -124 188 7 1176 186 30 50 chr1 223416099 223416498 -19247855 + L1MB5 LINE L1 5880 6272 0 5299 120 19 44 chr1 223416650 223417704 -19246649 - L1PA16 LINE L1 0 6166 5152 441 270 18 18 chr1 223418739 223418902 -19245451 + CT-rich Low_complexity Low_complexity 4 166 0 582 158 8 23 chr1 223418994 223419127 -19245226 + CT-rich Low_complexity Low_complexity 6 136 0 242 285 83 52 chr1 223419127 223419320 -19245033 + L1MCa LINE L1 542 740 -5686 1041 234 7 4 chr1 223419445 223419718 -19244635 - L1M4 LINE L1 -1959 4187 3914 1394 164 156 4 chr1 223419733 223420002 -19244351 + AluJb SINE Alu 1 306 0 2175 265 47 6 chr1 223420002 223420733 -19243620 - L1M4 LINE L1 -875 5271 4511 348 291 123 17 chr1 223420850 223421029 -19243324 + L2 LINE L2 3108 3305 -8 270 0 0 0 chr1 223421075 223421105 -19243248 + (CA)n Simple_repeat Simple_repeat 1 30 0 480 167 52 0 chr1 223421221 223421317 -19243036 + L1MC/D LINE L1 5645 5745 -588 811 263 95 8 chr1 223421328 223421708 -19242645 + L1M4 LINE L1 4419 4831 -1315 42423 42 2 1 chr1 223421827 223427972 -19236381 - L1PA4 LINE L1 -2 6153 1 2023 164 0 0 chr1 223428308 223428612 -19235741 + AluSx SINE Alu 1 304 -8 356 286 43 104 chr1 223428744 223429206 -19235147 + L1M4 LINE L1 583 1016 -5526 189 74 0 0 chr1 223429771 223429798 -19234555 + (A)n Simple_repeat Simple_repeat 1 27 0 717 168 1 4 chr1 223430328 223432774 -19231579 + HSAT4 Satellite centromeric 1 2437 -5 475 158 0 0 chr1 223432786 223432868 -19231485 + HSAT4 Satellite centromeric 19 100 -5 258 236 0 0 chr1 223432897 223432952 -19231401 + HSAT4 Satellite centromeric 25 79 -26 568 194 3 0 chr1 223432967 223433262 -19231091 + HSAT4 Satellite centromeric 1 295 -19 2171 80 10 26 chr1 223433262 223433400 -19230953 + AluY SINE Alu 1 140 -171 2346 81 0 10 chr1 223433400 223433715 -19230638 + AluY SINE Alu 1 311 0 2171 80 10 26 chr1 223433715 223433878 -19230475 + AluY SINE Alu 140 297 -14 743 164 3 1 chr1 223433878 223436029 -19228324 + HSAT4 Satellite centromeric 1 2153 -7 692 170 3 1 chr1 223436041 223437962 -19226391 + HSAT4 Satellite centromeric 1 1925 -5 2511 78 74 45 chr1 223437968 223438413 -19225940 + LTR14B LTR ERVK 1 608 0 669 170 4 0 chr1 223438413 223440253 -19224100 + HSAT4 Satellite centromeric 1 1848 -12 727 177 6 1 chr1 223440266 223444158 -19220195 + HSAT4 Satellite centromeric 1 3911 -40 719 176 5 4 chr1 223444169 223448930 -19215423 + HSAT4 Satellite centromeric 1 4770 0 681 185 5 6 chr1 223448960 223454715 -19209638 + HSAT4 Satellite centromeric 1 5744 -19 550 107 48 0 chr1 223454717 223454801 -19209552 + AluSp/q SINE Alu 209 296 -17 763 163 4 1 chr1 223454801 223456096 -19208257 + HSAT4 Satellite centromeric 1 1298 -24 224 280 0 13 chr1 223456105 223456180 -19208173 + (TCTCTG)n Simple_repeat Simple_repeat 3 76 0 253 314 8 8 chr1 223456202 223456320 -19208033 + (TG)n Simple_repeat Simple_repeat 1 118 0 617 64 117 0 chr1 223456929 223457023 -19207330 + 5S rRNA rRNA 1 105 -16 2169 90 0 16 chr1 223457124 223457435 -19206918 - AluY SINE Alu -5 306 1 302 169 0 28 chr1 223457997 223458068 -19206285 + (CACG)n Simple_repeat Simple_repeat 4 72 0 377 216 7 0 chr1 223458098 223458237 -19206116 + GA-rich Low_complexity Low_complexity 1 140 0 2149 94 0 0 chr1 223459176 223459483 -19204870 + AluY SINE Alu 1 307 -4 656 0 0 0 chr1 223459492 223459569 -19204784 - 5S rRNA rRNA 0 121 45 1305 145 35 60 chr1 223659868 223659941 -19004412 - MER44D DNA MER2_type -1889 602 529 2156 149 55 22 chr1 223659941 223660358 -19003995 - MSTB1 LTR MaLR 0 432 2 1305 145 35 60 chr1 223660358 223660567 -19003786 - MER44D DNA MER2_type -1962 529 57 264 282 82 26 chr1 223662016 223662195 -19002158 + MIR3 SINE MIR 15 205 -57 393 215 32 11 chr1 223662240 223662333 -19002020 - MLT1A1 LTR MaLR 0 365 271 523 241 48 14 chr1 223662657 223662802 -19001551 - MLT1A1 LTR MaLR -215 150 1 282 286 0 0 chr1 223662803 223662901 -19001452 + (TG)n Simple_repeat Simple_repeat 1 98 0 637 72 0 0 chr1 223662923 223663006 -19001347 - MER51B LTR ERV1 -83 294 212 180 270 56 56 chr1 223663666 223663755 -19000598 + MIR3 SINE MIR 8 96 -112 30 45 0 0 chr1 223663922 223663966 -19000387 + AT_rich Low_complexity Low_complexity 1 44 0 2060 118 0 3 chr1 223663970 223664266 -19000087 + AluSq SINE Alu 1 295 -18 736 251 52 0 chr1 223664709 223664900 -18999453 + MER58A DNA MER1_type 24 224 0 351 292 51 99 chr1 223665083 223665395 -18998958 - MLT1L LTR MaLR -185 430 134 243 0 0 0 chr1 223665666 223665693 -18998660 + (T)n Simple_repeat Simple_repeat 1 27 0 704 304 39 4 chr1 223665827 223666057 -18998296 - MIR SINE MIR 0 262 25 338 353 93 23 chr1 223666302 223666560 -18997793 - L2 LINE L2 -4 3268 2993 2053 88 14 17 chr1 223666813 223667108 -18997245 - AluSx SINE Alu -18 294 1 300 350 0 0 chr1 223667191 223667288 -18997065 - L2 LINE L2 -3 3310 3214 191 203 43 87 chr1 223667864 223667933 -18996420 + MIR SINE MIR 72 137 -71 281 316 110 15 chr1 223667974 223668110 -18996243 + L2 LINE L2 3165 3313 0 261 273 8 83 chr1 223668199 223668320 -18996033 - L2 LINE L2 -217 3055 2944 299 300 57 81 chr1 223668353 223668600 -18995753 - L2 LINE L2 -178 3094 2854 352 258 32 0 chr1 223668743 223668836 -18995517 + MIR3 SINE MIR 111 206 -2 265 204 56 0 chr1 223669460 223669514 -18994839 - MER91B DNA MER1_type -130 60 4 240 298 77 19 chr1 223669527 223669631 -18994722 - L2 LINE L2 0 3313 3204 1269 136 5 10 chr1 223669895 223670094 -18994259 - AluJo SINE Alu -9 303 106 1419 161 79 15 chr1 223670602 223670905 -18993448 + AluJo SINE Alu 1 320 0 1448 167 8 11 chr1 223671158 223671422 -18992931 - AluJo SINE Alu -7 305 43 375 340 128 30 chr1 223671453 223671962 -18992391 + L2 LINE L2 2696 3271 -1 419 302 9 9 chr1 223672235 223672351 -18992002 + LTR67 LTR ERVL 442 557 0 899 169 6 12 chr1 223672633 223672799 -18991554 - FRAM SINE Alu -11 165 1 1342 188 20 14 chr1 223674240 223674533 -18989820 - AluJo SINE Alu -13 299 5 330 312 29 47 chr1 223674701 223674871 -18989482 - MER5A DNA MER1_type -6 183 17 * 363 328 46 8 chr1 223674742 223674873 -18989480 + MER5A DNA MER1_type 54 189 0 648 323 58 9 chr1 223676864 223677090 -18987263 + MIR SINE MIR 25 261 -1 1791 168 18 26 chr1 223677719 223677901 -18986452 - MLT1A1 LTR MaLR -29 336 157 1465 177 9 63 chr1 223677901 223678217 -18986136 - AluJb SINE Alu -13 299 1 1791 168 18 26 chr1 223678217 223678373 -18985980 - MLT1A1 LTR MaLR -208 157 1 714 135 10 0 chr1 223678461 223678565 -18985788 + AluSq/x SINE Alu 3 107 -206 231 320 50 20 chr1 223679391 223679491 -18984862 - L2 LINE L2 -2 3270 3168 222 265 51 41 chr1 223680115 223680213 -18984140 - MIR SINE MIR -58 150 52 277 327 80 37 chr1 223680619 223680900 -18983453 + L2 LINE L2 2715 3010 -262 1991 105 10 20 chr1 223681564 223681859 -18982494 + AluSg1 SINE Alu 1 292 -17 207 0 0 0 chr1 223681868 223681891 -18982462 + (TG)n Simple_repeat Simple_repeat 2 24 0 211 137 20 20 chr1 223682000 223682051 -18982302 + (TA)n Simple_repeat Simple_repeat 2 52 0 2166 103 3 6 chr1 223682132 223682443 -18981910 + AluY SINE Alu 1 310 -1 1778 158 0 7 chr1 223682823 223683120 -18981233 - AluJo SINE Alu -17 295 1 252 86 0 0 chr1 223683541 223683576 -18980777 + (GA)n Simple_repeat Simple_repeat 2 36 0 311 181 14 0 chr1 223685554 223685626 -18978727 + CT-rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr1 223685862 223685884 -18978469 + AT_rich Low_complexity Low_complexity 1 22 0 589 253 47 58 chr1 223685894 223686047 -18978306 - MIR SINE MIR -17 245 93 1340 246 174 2 chr1 223686047 223686477 -18977876 + MLT1D LTR MaLR 2 505 0 589 253 47 58 chr1 223686477 223686513 -18977840 - MIR SINE MIR -169 93 58 1692 185 14 0 chr1 223686546 223686843 -18977510 - AluJb SINE Alu -11 301 1 303 254 41 83 chr1 223686864 223687033 -18977320 + L1M4 LINE L1 3024 3185 -2961 5350 113 63 21 chr1 223687977 223688814 -18975539 - MER4D LTR ERV1 0 872 1 306 302 19 9 chr1 223689144 223689250 -18975103 - LTR67 LTR ERVL -42 515 409 191 222 0 44 chr1 223690105 223690150 -18974203 + L2 LINE L2 3263 3305 -8 866 206 69 0 chr1 223690711 223690886 -18973467 - AluJo SINE Alu -7 305 119 462 270 99 13 chr1 223690900 223691052 -18973301 - L2 LINE L2 -5 3308 3144 2036 116 20 0 chr1 223691053 223691345 -18973008 - AluSx SINE Alu -14 298 1 1894 151 6 3 chr1 223691382 223691693 -18972660 - AluJb SINE Alu 0 312 1 198 312 138 0 chr1 223691820 223691958 -18972395 - L2 LINE L2 -786 2528 2372 808 139 8 16 chr1 223692044 223692173 -18972180 + AluJo SINE Alu 1 128 -174 268 205 60 24 chr1 223692770 223692853 -18971500 + MIR SINE MIR 20 105 -103 331 233 100 73 chr1 223693120 223693270 -18971083 - L1MD1 LINE L1 -181 6061 5908 247 296 111 32 chr1 223693513 223693766 -18970587 + L2 LINE L2 2871 3143 -170 4663 177 21 18 chr1 223695446 223696630 -18967723 - L1MB2 LINE L1 -7 6164 4969 860 183 178 0 chr1 223696919 223697099 -18967254 + L1MC2 LINE L1 393 604 -5822 5261 224 23 44 chr1 223697101 223698494 -18965859 + L1MC2 LINE L1 2617 3975 -2451 1631 190 0 6 chr1 223698494 223698805 -18965548 + AluJo SINE Alu 1 309 -3 5261 224 23 44 chr1 223698805 223698961 -18965392 + L1MC2 LINE L1 3975 4133 -2293 1363 197 67 65 chr1 223698961 223699344 -18965009 - MLT1B LTR MaLR -5 391 1 5581 205 68 9 chr1 223699344 223700006 -18964347 + L1MC2 LINE L1 4134 4756 -1868 1883 125 23 141 chr1 223700006 223700122 -18964231 - MLT1B LTR MaLR 0 390 262 1541 172 31 10 chr1 223700122 223700413 -18963940 + AluJo SINE Alu 1 297 -15 1883 125 23 141 chr1 223700413 223700737 -18963616 - MLT1B LTR MaLR -128 262 2 5581 205 68 9 chr1 223700737 223702424 -18961929 + L1MC2 LINE L1 4756 6624 0 927 181 0 0 chr1 223702705 223702865 -18961488 + AluJo SINE Alu 129 288 -24 187 273 131 40 chr1 223703481 223703580 -18960773 - MIR3 SINE MIR -24 184 77 339 299 86 8 chr1 223703608 223703725 -18960628 + L2 LINE L2 3183 3308 -5 816 146 0 8 chr1 223704251 223704381 -18959972 + FLAM_C SINE Alu 3 131 -12 464 296 90 39 chr1 223704646 223704825 -18959528 - MIR SINE MIR -41 167 30 183 309 82 0 chr1 223705051 223705148 -18959205 - L2 LINE L2 -11 3261 3157 414 316 95 39 chr1 223705153 223705764 -18958589 + L2 LINE L2 1928 2572 -742 382 279 18 9 chr1 223705857 223705968 -18958385 + L2 LINE L2 3172 3283 -30 323 314 112 66 chr1 223705972 223706584 -18957769 + L2 LINE L2 2605 3272 0 271 319 96 15 chr1 223706978 223707113 -18957240 - L3b LINE CR1 -116 1467 1322 2196 107 0 0 chr1 223708320 223708620 -18955733 - AluSx SINE Alu -12 300 1 923 224 40 0 chr1 223708929 223709130 -18955223 - L1PB4 LINE L1 -3 6153 5945 2082 113 17 0 chr1 223709277 223709568 -18954785 - AluSx SINE Alu -12 300 5 1401 137 91 25 chr1 223710221 223710394 -18953959 + MLT1B LTR MaLR 1 202 -188 324 0 0 0 chr1 223710394 223710430 -18953923 + (CA)n Simple_repeat Simple_repeat 2 37 0 1401 137 91 25 chr1 223710430 223710541 -18953812 + MLT1B LTR MaLR 202 304 -86 1316 162 4 61 chr1 223711545 223711823 -18952530 + AluJo SINE Alu 46 307 -5 22 0 0 0 chr1 223711823 223711845 -18952508 + AT_rich Low_complexity Low_complexity 1 22 0 1742 127 12 0 chr1 223712683 223712942 -18951411 + L1MC/D LINE L1 5448 5709 -624 855 76 46 7 chr1 223712953 223713334 -18951019 + (TCTA)n Simple_repeat Simple_repeat 3 572 0 305 317 0 24 chr1 223713334 223713416 -18950937 - L1MC4 LINE L1 -1339 6703 6624 271 338 7 54 chr1 223713500 223713648 -18950705 - MER5A DNA MER1_type -45 144 4 420 309 62 11 chr1 223714398 223714576 -18949777 + MIR SINE MIR 2 188 -74 310 353 36 0 chr1 223715191 223715330 -18949023 + MIR SINE MIR 99 242 -20 3108 175 77 15 chr1 223715716 223716485 -18947868 + MER21A LTR ERV1 3 931 0 216 97 0 0 chr1 223716815 223716846 -18947507 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 252 294 29 15 chr1 223718420 223718556 -18945797 + L1M4 LINE L1 3852 3989 -2157 3332 138 50 26 chr1 223718753 223719334 -18945019 + LTR49 LTR ERV1 1 595 0 569 269 170 25 chr1 223719526 223719890 -18944463 - MLT1J LTR MaLR -63 448 32 962 84 0 7 chr1 223720833 223720976 -18943377 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 696 203 0 0 chr1 223721013 223721136 -18943217 - FLAM_A SINE Alu -10 123 1 1551 171 9 179 chr1 223721188 223721287 -18943066 + MLT2D LTR ERVL 1 115 -299 1844 158 0 7 chr1 223721287 223721590 -18942763 - AluJb SINE Alu -9 303 3 1551 171 9 179 chr1 223721590 223721911 -18942442 + MLT2D LTR ERVL 115 357 -57 965 127 0 6 chr1 223721911 223722092 -18942261 + (CA)n Simple_repeat Simple_repeat 1 180 0 1551 171 9 179 chr1 223722092 223722127 -18942226 + MLT2D LTR ERVL 357 396 -18 265 238 100 12 chr1 223722127 223722257 -18942096 + MIR SINE MIR 52 249 -13 899 219 47 19 chr1 223722946 223723161 -18941192 + MER58A DNA MER1_type 4 224 0 297 0 0 0 chr1 223725744 223725777 -18938576 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3928 142 36 20 chr1 223725929 223726617 -18937736 + LTR34 LTR ERV1 1 699 0 3844 124 24 40 chr1 223726964 223727411 -18936942 + LTR36 LTR ERV1 1 437 -174 2067 111 23 7 chr1 223727411 223727718 -18936635 - AluSx SINE Alu 0 312 1 3844 124 24 40 chr1 223727718 223727891 -18936462 + LTR36 LTR ERV1 437 611 0 359 393 15 5 chr1 223728551 223728747 -18935606 - MIR SINE MIR -56 206 9 395 317 21 14 chr1 223729420 223729562 -18934791 - MER5B DNA MER1_type -30 148 6 6433 175 10 18 chr1 223729730 223732976 -18931377 - L1PB1 LINE L1 -2 6149 2685 1691 197 3 0 chr1 223733079 223733388 -18930965 - AluJb SINE Alu 0 312 3 2039 176 136 18 chr1 223734734 223735233 -18929120 + MER74A LTR ERVL 1 558 0 187 359 112 6 chr1 223736001 223736171 -18928182 + MIR3 SINE MIR 1 188 -20 3760 139 47 37 chr1 223736659 223737364 -18926989 - L1MB3 LINE L1 -153 6528 5817 655 140 0 19 chr1 223737380 223737487 -18926866 - FLAM_A SINE Alu -16 126 22 490 222 27 92 chr1 223737496 223737573 -18926780 - L1MB3 LINE L1 -816 5828 5748 2176 109 3 0 chr1 223737573 223737875 -18926478 - AluSx SINE Alu -9 303 1 490 222 27 92 chr1 223737875 223737982 -18926371 - L1MB3 LINE L1 -896 5748 5656 781 113 0 9 chr1 223737998 223738113 -18926240 - FLAM_C SINE Alu -12 131 18 6005 235 46 13 chr1 223738115 223739752 -18924601 - L1MB3 LINE L1 -978 5666 3975 1332 258 23 26 chr1 223740378 223740943 -18923410 - L1MB3 LINE L1 -2621 4023 3461 * 5743 161 9 2 chr1 223740939 223742365 -18921988 - L1PA16 LINE L1 -2 6164 4728 315 83 21 0 chr1 223742365 223742413 -18921940 - L1MB3 LINE L1 -3167 3477 3429 * 5404 202 98 55 chr1 223742409 223744820 -18919533 - L1MB3 LINE L1 -4080 2566 4 264 288 45 0 chr1 223746438 223746504 -18917849 - MIR3 SINE MIR -48 160 92 615 210 17 0 chr1 223747274 223747393 -18916960 + MER45A DNA AcHobo 58 178 0 439 299 71 0 chr1 223747466 223747593 -18916760 + L2 LINE L2 3137 3272 0 598 265 85 5 chr1 223748405 223748605 -18915748 - MIR SINE MIR -25 237 22 304 275 50 12 chr1 223748900 223748980 -18915373 - L2 LINE L2 -8 3305 3223 360 291 122 54 chr1 223748984 223749279 -18915074 + L2 LINE L2 2068 2382 -932 1636 184 14 0 chr1 223750517 223750810 -18913543 - AluJo SINE Alu -13 299 3 1903 227 39 47 chr1 223751244 223751861 -18912492 - LTR9 LTR ERV1 0 612 1 304 163 0 0 chr1 223752176 223752219 -18912134 + FAM SINE Alu 115 157 -22 231 36 0 0 chr1 223752220 223752248 -18912105 + (TAA)n Simple_repeat Simple_repeat 2 29 0 937 185 152 36 chr1 223753346 223753622 -18910731 + MER33 DNA MER1_type 17 324 0 442 151 0 40 chr1 223754077 223754203 -18910150 + CT-rich Low_complexity Low_complexity 4 124 0 * 690 100 0 0 chr1 223754193 223754293 -18910060 + (TCTCC)n Simple_repeat Simple_repeat 5 104 0 746 261 4 75 chr1 223754614 223754882 -18909471 - MER112 DNA MER1_type -6 254 6 2375 99 0 3 chr1 223755366 223755668 -18908685 + AluSg SINE Alu 1 301 -9 660 167 26 0 chr1 223756357 223756471 -18907882 - FRAM SINE Alu -7 169 53 225 278 148 19 chr1 223757935 223758043 -18906310 - MIR SINE MIR -64 144 23 247 406 0 0 chr1 223758826 223758959 -18905394 - MIR SINE MIR -107 155 23 374 315 135 22 chr1 223760035 223760213 -18904140 - MIR SINE MIR -40 222 25 618 211 30 35 chr1 223760728 223760914 -18903439 + L1MC5 LINE L1 7299 7485 -476 1609 209 26 10 chr1 223760914 223761221 -18903132 + AluJb SINE Alu 1 312 0 618 211 30 35 chr1 223761221 223761233 -18903120 + L1MC5 LINE L1 7485 7496 -465 351 113 0 0 chr1 223761233 223761286 -18903067 + (GGA)n Simple_repeat Simple_repeat 2 54 0 690 248 50 80 chr1 223761287 223761763 -18902590 + L1MC5 LINE L1 7474 7935 -26 2092 168 5 19 chr1 223763267 223763637 -18900716 + MLT1A1 LTR MaLR 1 365 0 264 59 0 0 chr1 223764674 223764708 -18899645 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1644 172 31 21 chr1 223764708 223764998 -18899355 - AluJo SINE Alu -19 293 1 234 256 12 47 chr1 223765166 223765252 -18899101 - MER103 DNA DNA -42 124 42 460 280 21 0 chr1 223765322 223765465 -18898888 + MER33 DNA MER1_type 8 153 -171 1963 154 7 7 chr1 223765466 223765764 -18898589 - AluJb SINE Alu -10 302 5 1212 195 43 22 chr1 223765796 223765965 -18898388 + L1MA9 LINE L1 5989 6168 -144 342 0 0 0 chr1 223765965 223766003 -18898350 + (CA)n Simple_repeat Simple_repeat 1 38 0 1212 195 43 22 chr1 223766003 223766110 -18898243 + L1MA9 LINE L1 6168 6271 -41 415 179 19 0 chr1 223766119 223766225 -18898128 + MER33 DNA MER1_type 189 296 -67 249 186 17 17 chr1 223766215 223766274 -18898079 - FLAM SINE Alu -1 132 74 * 3361 64 50 0 chr1 223766917 223766953 -18897400 - MLT2A1 LTR ERVL 0 444 411 273 119 0 0 chr1 223766953 223766995 -18897358 + (TA)n Simple_repeat Simple_repeat 2 43 0 3361 64 50 0 chr1 223766995 223767381 -18896972 - MLT2A1 LTR ERVL -33 411 1 243 301 126 21 chr1 223767496 223767639 -18896714 + MIR SINE MIR 49 206 -56 369 0 0 0 chr1 223768488 223768529 -18895824 + (A)n Simple_repeat Simple_repeat 1 41 0 2263 112 6 10 chr1 223768787 223769099 -18895254 + AluY SINE Alu 1 311 0 940 103 174 0 chr1 223769242 223769397 -18894956 + LTR9 LTR ERV1 69 250 -362 434 257 87 15 chr1 223770377 223770583 -18893770 + HsTC2 DNA Tc2 1573 1793 -105 247 196 0 20 chr1 223770840 223770872 -18893481 + (CATA)n Simple_repeat Simple_repeat 3 35 -17 2926 158 77 28 chr1 223770872 223771446 -18892907 - MER7C DNA MER2_type 0 602 1 247 196 0 20 chr1 223771446 223771464 -18892889 + (CATA)n Simple_repeat Simple_repeat 35 52 0 1446 208 7 3 chr1 223771960 223772268 -18892085 + MER58B DNA MER1_type 27 335 -6 2289 106 10 0 chr1 223772509 223772802 -18891551 - AluSx SINE Alu -8 304 9 2559 84 0 0 chr1 223772832 223773141 -18891212 - AluY SINE Alu -2 309 1 1031 171 35 0 chr1 223773355 223773525 -18890828 - AluJ SINE Alu -17 295 120 180 0 0 0 chr1 223773525 223773545 -18890808 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 816 163 0 0 chr1 223773558 223773687 -18890666 - AluJ SINE Alu -181 131 3 2268 124 0 3 chr1 223773907 223774213 -18890140 - AluSg SINE Alu -5 305 1 507 323 48 0 chr1 223774699 223774885 -18889468 - MIR SINE MIR -48 214 20 683 129 0 0 chr1 223775247 223775348 -18889005 + FLAM_A SINE Alu 35 135 -7 234 326 43 0 chr1 223775696 223775788 -18888565 - L2 LINE L2 -5 3308 3213 267 282 47 0 chr1 223776361 223776446 -18887907 - MER103 DNA DNA -19 147 59 461 300 61 22 chr1 223776891 223777071 -18887282 + MIR SINE MIR 68 254 -8 182 172 33 25 chr1 223777079 223777201 -18887152 + (CA)n Simple_repeat Simple_repeat 2 124 0 1446 144 168 4 chr1 223777376 223777632 -18886721 + AluJb SINE Alu 5 302 0 181 262 33 16 chr1 223778664 223778725 -18885628 + L2 LINE L2 3201 3262 -10 1924 132 98 8 chr1 223779340 223779696 -18884657 + MLT1B LTR MaLR 3 390 0 548 261 43 117 chr1 223779825 223780041 -18884312 - MER46C DNA MER2_type -12 326 144 2435 132 46 29 chr1 223780041 223780458 -18883895 + MSTB LTR MaLR 3 426 0 548 261 43 117 chr1 223780458 223780593 -18883760 - MER46C DNA MER2_type -194 144 1 256 317 56 49 chr1 223780608 223780750 -18883603 - MIR3 SINE MIR -55 153 11 4106 128 7 61 chr1 223781118 223781251 -18883102 - MER50 LTR ERV1 -17 717 578 2186 115 3 10 chr1 223781251 223781556 -18882797 - AluSx SINE Alu -9 303 1 4106 128 7 61 chr1 223781556 223782180 -18882173 - MER50 LTR ERV1 -156 578 1 228 149 0 0 chr1 223782364 223782411 -18881942 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 402 346 35 13 chr1 223783109 223783340 -18881013 + MLT1J LTR MaLR 10 245 -266 2342 89 0 3 chr1 223783694 223783987 -18880366 + AluSc SINE Alu 1 292 -17 904 300 201 20 chr1 223784389 223784994 -18879359 - L2 LINE L2 0 3313 2595 190 235 173 37 chr1 223784986 223785067 -18879286 - MIR SINE MIR -97 165 74 * 271 310 109 35 chr1 223785114 223785288 -18879065 - MIR SINE MIR -56 206 20 198 321 45 71 chr1 223785424 223785536 -18878817 - L2 LINE L2 -23 3249 3141 1479 265 95 11 chr1 223785782 223786318 -18878035 - MLT1G LTR MaLR -8 582 2 4546 183 34 14 chr1 223786896 223788672 -18875681 - L1MB7 LINE L1 0 6682 4870 4956 136 21 10 chr1 223788675 223789494 -18874859 - L1MA7 LINE L1 0 6291 5464 3243 227 28 43 chr1 223789504 223790408 -18873945 - L1MB7 LINE L1 -5639 903 14 452 289 31 0 chr1 223790546 223790705 -18873648 - MER103 DNA DNA -2 164 1 378 309 123 31 chr1 223791468 223791630 -18872723 + MIR3 SINE MIR 30 206 -2 615 310 143 43 chr1 223792769 223793452 -18870901 + L2 LINE L2 2541 3308 -5 719 215 85 17 chr1 223794008 223794185 -18870168 + MER58A DNA MER1_type 36 224 0 234 219 0 0 chr1 223795177 223795241 -18869112 + (TG)n Simple_repeat Simple_repeat 1 64 0 399 316 105 6 chr1 223796364 223796535 -18867818 - MIR SINE MIR -54 208 21 349 298 102 77 chr1 223796605 223796650 -18867703 + L2 LINE L2 2865 2907 -365 2049 181 10 23 chr1 223796650 223797043 -18867310 + MLT1B LTR MaLR 3 390 0 349 298 102 77 chr1 223797043 223797359 -18866994 + L2 LINE L2 2907 3235 -37 230 288 82 0 chr1 223798110 223798183 -18866170 + MIR SINE MIR 105 183 -79 7251 147 14 21 chr1 223799572 223800093 -18864260 - Tigger3b DNA MER2_type -1797 1231 708 2118 108 0 0 chr1 223800093 223800381 -18863972 - AluSx SINE Alu -18 294 7 7251 147 14 21 chr1 223800381 223800508 -18863845 - Tigger3b DNA MER2_type -2320 708 582 1710 146 13 20 chr1 223800508 223800809 -18863544 - AluJo SINE Alu -13 299 1 7251 147 14 21 chr1 223800809 223801114 -18863239 - Tigger3b DNA MER2_type -2446 582 284 2126 168 68 15 chr1 223801114 223801524 -18862829 - MSTB1 LTR MaLR 0 432 1 7251 147 14 21 chr1 223801524 223801807 -18862546 - Tigger3b DNA MER2_type -2744 284 1 286 258 34 22 chr1 223802313 223802402 -18861951 - MER112 DNA MER1_type -104 156 67 509 204 6 0 chr1 223802405 223802572 -18861781 + (TG)n Simple_repeat Simple_repeat 1 168 0 231 208 39 91 chr1 223802578 223802655 -18861698 - MER112 DNA MER1_type -183 77 5 216 82 41 20 chr1 223804406 223804455 -18859898 + (CA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr1 223805113 223805136 -18859217 + AT_rich Low_complexity Low_complexity 1 23 0 279 79 0 0 chr1 223805873 223805911 -18858442 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 1874 73 8 0 chr1 223805927 223806173 -18858180 + AluSc SINE Alu 39 286 -23 212 185 0 37 chr1 223806397 223806451 -18857902 + G-rich Low_complexity Low_complexity 6 57 0 290 87 22 0 chr1 223807044 223807090 -18857263 + (TTTTC)n Simple_repeat Simple_repeat 1 47 0 204 243 199 35 chr1 223807142 223807311 -18857042 - MIR SINE MIR -62 146 9 225 204 122 0 chr1 223808719 223808768 -18855585 + L2 LINE L2 3259 3313 0 343 301 0 24 chr1 223808943 223809066 -18855287 - MIR SINE MIR -114 148 29 201 94 0 0 chr1 223809473 223809505 -18854848 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 2190 71 14 0 chr1 223809647 223809929 -18854424 + AluSp SINE Alu 1 286 -27 351 0 0 0 chr1 223809929 223809968 -18854385 + (CA)n Simple_repeat Simple_repeat 2 40 0 2146 111 3 0 chr1 223810014 223810311 -18854042 - AluSp SINE Alu -15 298 1 21 0 0 0 chr1 223810387 223810408 -18853945 + AT_rich Low_complexity Low_complexity 1 21 0 499 332 34 78 chr1 223811074 223811484 -18852869 - MLT1I LTR MaLR -15 394 3 222 277 47 34 chr1 223811780 223811928 -18852425 - L2 LINE L2 -291 2981 2832 1790 109 3 97 chr1 223811962 223812283 -18852070 - AluSg SINE Alu -19 291 1 1570 193 0 13 chr1 223812366 223812672 -18851681 - AluJo SINE Alu -10 302 1 3342 266 89 21 chr1 223813326 223813490 -18850863 + L1ME3A LINE L1 3679 3830 -2340 2530 37 0 0 chr1 223813490 223813789 -18850564 + AluY SINE Alu 1 299 -12 3342 266 89 21 chr1 223813789 223815943 -18848410 + L1ME3A LINE L1 3830 6161 -9 365 293 41 24 chr1 223816452 223816575 -18847778 + L1MC4 LINE L1 6578 6702 -1340 2558 149 7 10 chr1 223816594 223817002 -18847351 - Tigger2a DNA MER2_type 0 434 28 1540 193 10 3 chr1 223818300 223818590 -18845763 + AluJo SINE Alu 1 292 -20 3098 28 0 6 chr1 223818594 223818954 -18845399 + L1PA7 LINE L1 5797 6154 0 21 36 0 0 chr1 223818997 223819025 -18845328 + AT_rich Low_complexity Low_complexity 1 28 0 456 261 90 16 chr1 223819220 223819408 -18844945 - MLT1L LTR MaLR -172 443 242 503 163 0 0 chr1 223819425 223819505 -18844848 + FLAM_A SINE Alu 48 127 -15 3170 199 54 3 chr1 223819522 223820184 -18844169 + L1MB4 LINE L1 5485 6180 0 189 107 0 0 chr1 223820264 223820292 -18844061 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 252 238 16 16 chr1 223821615 223821678 -18842675 + LTR48 LTR ERV1 1 63 -724 4701 143 28 78 chr1 223821680 223822036 -18842317 + MER4D LTR ERV1 1 373 -530 2978 34 6 0 chr1 223822036 223822390 -18841963 - L1PA3 LINE L1 -3 6152 5797 4701 143 28 78 chr1 223822390 223822974 -18841379 + MER4D LTR ERV1 373 894 -9 1685 224 90 16 chr1 223822992 223823564 -18840789 + LTR48 LTR ERV1 61 768 -19 425 294 52 91 chr1 223824646 223824834 -18839519 + MIR SINE MIR 39 233 -29 4754 108 11 33 chr1 223824834 223825539 -18838814 - LTR8 LTR ERV1 -1 690 1 1083 163 100 126 chr1 223825547 223826007 -18838346 + LTR7 LTR ERV1 1 448 -2 425 294 52 91 chr1 223826007 223826040 -18838313 + MIR SINE MIR 240 260 -2 243 279 16 0 chr1 223826082 223826143 -18838210 - MIR3 SINE MIR 0 208 147 1933 161 21 3 chr1 223826378 223826705 -18837648 + MER34C LTR ERV1 35 367 -218 390 133 0 0 chr1 223826705 223826765 -18837588 - MSTC LTR MaLR 0 428 369 1886 200 58 23 chr1 223826765 223827367 -18836986 + L1MA4 LINE L1 4538 5200 -946 4693 126 16 13 chr1 223827368 223827876 -18836477 - MER50 LTR ERV1 -23 711 199 6299 75 1 3 chr1 223827876 223828657 -18835696 - LTR17 LTR ERV1 0 780 1 4693 126 16 13 chr1 223828657 223828857 -18835496 - MER50 LTR ERV1 -535 199 1 5455 169 28 7 chr1 223828857 223829927 -18834426 + L1MA4 LINE L1 5197 6289 -11 2034 155 28 34 chr1 223829927 223830282 -18834071 - MSTC LTR MaLR -51 377 25 1874 96 49 13 chr1 223830286 223830673 -18833680 - LTR7 LTR ERV1 -2 448 1 2602 71 48 13 chr1 223830673 223831052 -18833301 - HERVH LTR ERV1 0 7713 7322 1340 129 23 9 chr1 223831050 223831267 -18833086 - HERVH LTR ERV1 -1894 5819 5600 * 3836 135 71 22 chr1 223831268 223831899 -18832454 - HERVH LTR ERV1 -2564 5149 4488 3452 109 4 6 chr1 223831901 223832404 -18831949 - HERVH LTR ERV1 -3720 3993 3492 872 155 20 0 chr1 223832394 223832542 -18831811 - HERVH LTR ERV1 -4423 3290 3140 * 10789 97 5 12 chr1 223832536 223834079 -18830274 - HERVH LTR ERV1 -4726 2987 1456 2011 72 4 0 chr1 223834052 223834314 -18830039 - HERVH LTR ERV1 -7450 263 1 * 2611 102 58 21 chr1 223834316 223834748 -18829605 - LTR7 LTR ERV1 -2 448 1 1326 157 5 5 chr1 223834771 223834994 -18829359 + MER34C LTR ERV1 363 585 0 962 220 154 25 chr1 223835648 223835989 -18828364 - MLT1F1 LTR MaLR 0 542 118 2800 121 9 40 chr1 223835989 223836435 -18827918 + MSTB1 LTR MaLR 1 432 0 962 220 154 25 chr1 223836435 223836569 -18827784 - MLT1F1 LTR MaLR -424 118 3 782 273 125 35 chr1 223836647 223836992 -18827361 - MLT1I LTR MaLR 0 409 34 2090 195 119 89 chr1 223838402 223839138 -18825215 - LTR1B LTR ERV1 -62 958 1 5989 65 30 14 chr1 223839275 223840043 -18824310 - LTR17 LTR ERV1 0 780 1 192 40 0 0 chr1 223840199 223840224 -18824129 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 416 279 144 29 chr1 223840235 223840443 -18823910 + MIR SINE MIR 29 260 -2 2347 187 42 44 chr1 223840595 223841118 -18823235 - LTR26B LTR ERV1 -9 522 1 1275 179 57 11 chr1 223842373 223842636 -18821717 + MLT2C1 LTR ERVL 1 275 -122 318 269 19 37 chr1 223842998 223843106 -18821247 + MIR SINE MIR 116 221 -41 236 271 159 9 chr1 223844368 223844475 -18819878 + MIR SINE MIR 28 150 -112 258 105 0 0 chr1 223844744 223844782 -18819571 + Charlie3 DNA MER1_type 202 239 -2471 235 95 0 24 chr1 223844989 223845031 -18819322 - Charlie3 DNA MER1_type -2669 41 1 235 239 62 92 chr1 223845176 223845306 -18819047 + MIR SINE MIR 20 145 -63 4142 121 56 21 chr1 223845664 223846341 -18818012 - MER50 LTR ERV1 -24 710 10 2122 83 43 46 chr1 223847142 223847492 -18816861 - L1PA16 LINE L1 -12 6154 5806 1833 191 104 9 chr1 223848681 223849104 -18815249 + MLT1C LTR MaLR 1 463 -4 1948 132 140 23 chr1 223850624 223850973 -18813380 + MLT1B LTR MaLR 1 390 0 287 323 89 16 chr1 223851064 223851188 -18813165 - MIR SINE MIR -78 184 52 3610 204 30 41 chr1 223851742 223852680 -18811673 - L1ME1 LINE L1 -5 6161 5229 227 215 23 0 chr1 223853509 223853572 -18810781 + MIR SINE MIR 85 133 -75 785 300 148 13 chr1 223853642 223854286 -18810067 + L2 LINE L2 2585 3313 0 714 214 8 0 chr1 223855744 223855875 -18808478 - FLAM_A SINE Alu -1 132 1 352 330 118 9 chr1 223856183 223856395 -18807958 - L2 LINE L2 -219 3053 2819 4020 139 92 5 chr1 223856396 223857052 -18807301 - MER50 LTR ERV1 -20 714 2 419 306 132 35 chr1 223857099 223857409 -18806944 - L2 LINE L2 -648 2666 2327 1410 187 55 3 chr1 223858009 223858136 -18806217 + AluJo SINE Alu 1 120 -192 180 0 0 0 chr1 223858136 223858156 -18806197 + (TA)n Simple_repeat Simple_repeat 2 21 0 1410 187 55 3 chr1 223858156 223858317 -18806036 + AluJo SINE Alu 120 304 -8 612 277 13 13 chr1 223858703 223858862 -18805491 + MIR SINE MIR 104 262 0 606 262 154 36 chr1 223858961 223859324 -18805029 - MLT1I LTR MaLR -3 406 1 217 261 89 0 chr1 223859325 223859393 -18804960 - MIR SINE MIR -95 113 38 201 184 26 0 chr1 223859494 223859532 -18804821 + (CAA)n Simple_repeat Simple_repeat 3 41 0 1998 96 3 45 chr1 223859539 223859853 -18804500 - AluSc SINE Alu -7 302 2 1639 124 8 12 chr1 223861917 223862174 -18802179 + L1PA16 LINE L1 5902 6157 -9 2876 173 31 15 chr1 223862780 223863324 -18801029 - MER74A LTR ERVL -5 553 1 1561 180 0 24 chr1 223864806 223865095 -18799258 - AluJb SINE Alu -25 287 6 293 214 71 0 chr1 223865504 223865560 -18798793 + FLAM SINE Alu 62 121 -12 2639 126 7 57 chr1 223865839 223866085 -18798268 - MSTB LTR MaLR -3 423 207 2315 71 0 3 chr1 223866085 223866382 -18797971 - AluY SINE Alu -15 296 1 2639 126 7 57 chr1 223866382 223866573 -18797780 - MSTB LTR MaLR -219 207 8 542 230 53 66 chr1 223866741 223866893 -18797460 + MIR SINE MIR 98 247 -15 295 315 28 42 chr1 223867247 223867390 -18796963 + MIR3 SINE MIR 61 201 -7 31 88 0 0 chr1 223867617 223867697 -18796656 + AT_rich Low_complexity Low_complexity 1 80 0 1898 168 57 21 chr1 223868655 223869078 -18795275 - L1MB3 LINE L1 0 6183 5746 22 35 0 0 chr1 223869174 223869203 -18795150 + AT_rich Low_complexity Low_complexity 1 29 0 247 323 11 21 chr1 223869326 223869419 -18794934 - L2 LINE L2 -649 2665 2574 802 180 0 58 chr1 223869958 223870130 -18794223 + MER69A DNA AcHobo 13 174 -3 1938 144 3 0 chr1 223871276 223871568 -18792785 + AluJb SINE Alu 1 293 -19 183 80 0 0 chr1 223871572 223871597 -18792756 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2243 96 0 13 chr1 223871669 223871981 -18792372 + AluSg SINE Alu 1 308 -2 1521 229 87 10 chr1 223872039 223872454 -18791899 - L1ME3A LINE L1 -157 6013 5567 1924 105 59 0 chr1 223872515 223872821 -18791532 - L1MA5A LINE L1 -3 6294 5971 829 297 71 68 chr1 223873359 223874251 -18790102 + L1MEd LINE L1 108 1001 -5118 1810 218 120 75 chr1 223874252 223874935 -18789418 - HsTC2a DNA Tc2 -1 743 30 1314 178 93 22 chr1 223874941 223875262 -18789091 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr1 223875900 223875921 -18788432 + AT_rich Low_complexity Low_complexity 1 21 0 1981 182 30 83 chr1 223876340 223876538 -18787815 - MLT1D LTR MaLR 0 505 298 2143 115 0 3 chr1 223876538 223876851 -18787502 - AluSx SINE Alu 0 312 1 1981 182 30 83 chr1 223876851 223877185 -18787168 - MLT1D LTR MaLR -207 298 1 1565 173 7 17 chr1 223877642 223877942 -18786411 - AluJb SINE Alu -15 297 1 451 291 50 20 chr1 223877976 223878175 -18786178 - LTR67 LTR ERVL -19 538 334 357 137 32 24 chr1 223879388 223879512 -18784841 + (TAGA)n Simple_repeat Simple_repeat 3 127 0 238 231 26 26 chr1 223880056 223880134 -18784219 + (TG)n Simple_repeat Simple_repeat 1 78 0 249 311 94 19 chr1 223882597 223882703 -18781650 + L2 LINE L2 3140 3253 -19 400 164 0 0 chr1 223882865 223882926 -18781427 + AluS SINE Alu 2 62 -256 25 0 0 0 chr1 223883824 223883849 -18780504 + AT_rich Low_complexity Low_complexity 1 25 0 367 301 61 24 chr1 223884403 223884607 -18779746 + MIR SINE MIR 11 219 -43 647 277 118 18 chr1 223884679 223885011 -18779342 + MLT1J2 LTR MaLR 74 438 -12 282 167 53 175 chr1 223885096 223885210 -18779143 + MER102b DNA MER1_type 239 338 -3 2161 101 16 3 chr1 223885374 223885682 -18778671 + AluSx SINE Alu 1 312 0 240 257 29 100 chr1 223885700 223885840 -18778513 + MIR3 SINE MIR 39 168 -40 609 189 38 0 chr1 223885840 223885946 -18778407 - MLT1B LTR MaLR -2 388 279 399 233 25 17 chr1 223885944 223886064 -18778289 - MLT1B LTR MaLR -253 121 1 * 27 0 0 0 chr1 223886194 223886221 -18778132 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr1 223886236 223886275 -18778078 + AT_rich Low_complexity Low_complexity 1 39 0 3956 86 17 0 chr1 223886275 223886632 -18777721 - L1PB1 LINE L1 -1 6150 5780 204 40 0 0 chr1 223886632 223886657 -18777696 + (TA)n Simple_repeat Simple_repeat 2 26 0 3956 86 17 0 chr1 223886657 223886835 -18777518 - L1PB1 LINE L1 -371 5780 5606 318 342 63 0 chr1 223886927 223887085 -18777268 - L1M4 LINE L1 -1015 5131 4964 211 356 9 9 chr1 223887778 223887893 -18776460 + MIR SINE MIR 35 148 -83 2272 88 0 0 chr1 223887965 223888272 -18776081 - AluY SINE Alu -4 307 1 5628 37 0 0 chr1 223888300 223888968 -18775385 - L1PA3 LINE L1 -929 5217 4550 1567 29 0 0 chr1 223888967 223889201 -18775152 + L1PA3 LINE L1 5215 5448 -707 * 1348 32 0 0 chr1 223889224 223889416 -18774937 + L1PA3 LINE L1 5992 6183 0 6279 16 0 0 chr1 223889417 223890113 -18774240 + L1PA3 LINE L1 5447 6142 -13 3466 13 0 0 chr1 223889729 223890113 -18774240 + L1PA3 LINE L1 5759 6176 0 307 0 0 0 chr1 223890113 223890147 -18774206 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 182 294 165 18 chr1 223890813 223890983 -18773370 + L2 LINE L2 1731 1925 -1389 1162 133 0 0 chr1 223890990 223891170 -18773183 - L1MA4A LINE L1 -1 6302 6123 329 290 138 37 chr1 223891615 223891970 -18772383 + L1MEc LINE L1 92 482 -5914 1683 223 111 34 chr1 223892104 223892597 -18771756 - L1M4 LINE L1 -2397 3749 3189 1325 221 48 7 chr1 223892597 223892764 -18771589 - AluJb SINE Alu -11 301 116 212 31 62 0 chr1 223892764 223892796 -18771557 + T-rich Low_complexity Low_complexity 2 35 0 1325 221 48 7 chr1 223892796 223892917 -18771436 - AluJb SINE Alu -196 116 1 1683 223 111 34 chr1 223892917 223893096 -18771257 - L1M4 LINE L1 -2957 3189 3025 643 221 30 8 chr1 223893106 223893237 -18771116 - AluJb SINE Alu -178 134 1 417 186 167 0 chr1 223893243 223893345 -18771008 - L1M4 LINE L1 -3107 3039 2921 * 1249 249 133 0 chr1 223893333 223893710 -18770643 + L1MC4 LINE L1 7318 7744 -298 261 198 47 47 chr1 223893732 223893818 -18770535 + L1MC4 LINE L1 7816 7901 -141 854 223 48 31 chr1 223893911 223894201 -18770152 + L1ME1 LINE L1 5857 6177 -1 695 256 80 123 chr1 223894220 223894709 -18769644 + L1MC4 LINE L1 6693 7160 -801 271 271 18 60 chr1 223895323 223895489 -18768864 + L1ME4a LINE L1 5901 6059 -62 768 188 0 0 chr1 223895525 223895653 -18768700 - FLAM_C SINE Alu -5 128 1 336 83 0 0 chr1 223895672 223895720 -18768633 + (CA)n Simple_repeat Simple_repeat 1 48 0 2161 121 0 0 chr1 223896237 223896526 -18767827 - AluSq SINE Alu -24 289 1 425 129 0 0 chr1 223896740 223896802 -18767551 + FLAM SINE Alu 63 124 -19 1641 217 128 46 chr1 223897683 223898269 -18766084 - LTR27 LTR ERV1 0 636 3 1099 122 12 0 chr1 223898271 223898435 -18765918 - LTR27-int LTR ERV1 -1 7090 6925 217 146 0 24 chr1 223899174 223899215 -18765138 + (CAT)n Simple_repeat Simple_repeat 1 40 0 399 262 117 0 chr1 223899943 223900088 -18764265 - LTR67 LTR ERVL -1 556 395 403 356 0 26 chr1 223900849 223901043 -18763310 - MER5A DNA MER1_type 0 189 1 2522 191 47 8 chr1 223901130 223901638 -18762715 + MER74A LTR ERVL 1 528 -30 2397 226 62 79 chr1 223901675 223902515 -18761838 + MER21B LTR ERV1 1 826 -37 4590 121 37 12 chr1 223902549 223903466 -18760887 - L1PA14 LINE L1 -14 6158 5170 1973 131 41 3 chr1 223903961 223904252 -18760101 + AluSg SINE Alu 1 302 -8 395 268 7 63 chr1 223904804 223904946 -18759407 - L2 LINE L2 0 3313 3180 1010 212 163 23 chr1 223905702 223906008 -18758345 + MLT1G1 LTR MaLR 245 593 -2 279 234 84 48 chr1 223907545 223907677 -18756676 + L1ME4a LINE L1 5946 6088 -33 1958 144 0 14 chr1 223907677 223907991 -18756362 - AluSx SINE Alu 0 310 1 279 234 84 48 chr1 223907991 223908024 -18756329 + L1ME4a LINE L1 6088 6118 -3 385 260 50 60 chr1 223908349 223908549 -18755804 + L2 LINE L2 3103 3300 -13 2073 135 10 10 chr1 223909044 223909356 -18754997 + AluSx SINE Alu 1 312 0 1150 157 0 0 chr1 223909389 223909561 -18754792 + AluSg/x SINE Alu 137 308 -4 225 117 50 33 chr1 223909564 223909624 -18754729 + A-rich Low_complexity Low_complexity 5 65 0 4464 149 98 22 chr1 223909675 223910540 -18753813 + MER21A LTR ERV1 1 931 0 189 0 0 0 chr1 223911004 223911025 -18753328 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1559 175 52 4 chr1 223911028 223911180 -18753173 - AluJo SINE Alu -30 282 110 216 0 0 0 chr1 223911180 223911204 -18753149 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1559 175 52 4 chr1 223911204 223911320 -18753033 - AluJo SINE Alu -202 110 1 618 244 107 42 chr1 223911465 223911849 -18752504 - MLT1H1 LTR MaLR 0 555 128 1860 177 0 0 chr1 223912893 223913198 -18751155 + AluJb SINE Alu 1 305 -7 424 267 67 12 chr1 223913378 223913413 -18750940 + MER5A DNA MER1_type 9 41 -148 207 0 0 0 chr1 223913413 223913436 -18750917 + (CAG)n Simple_repeat Simple_repeat 1 23 0 424 267 67 12 chr1 223913436 223913565 -18750788 + MER5A DNA MER1_type 41 182 -7 243 311 61 15 chr1 223913604 223913736 -18750617 + MIR SINE MIR 8 145 -117 1463 163 0 4 chr1 223916370 223916597 -18747756 - AluJb SINE Alu -52 260 35 215 209 23 0 chr1 223916607 223916650 -18747703 + L2 LINE L2 3214 3257 -15 2587 61 0 0 chr1 223916787 223917098 -18747255 - AluY SINE Alu 0 311 1 924 161 8 144 chr1 223917754 223917997 -18746356 + AluJo SINE Alu 87 296 -16 269 330 52 78 chr1 223918673 223918903 -18745450 + L2 LINE L2 3049 3272 0 305 229 314 0 chr1 223919800 223919905 -18744448 + MER3 DNA MER1_type 1 138 -71 244 250 16 0 chr1 223921380 223921444 -18742909 - MER4C LTR ERV1 -251 214 150 2113 132 0 0 chr1 223921652 223921933 -18742420 + AluSg SINE Alu 1 281 -29 214 29 57 0 chr1 223921964 223921999 -18742354 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1363 171 98 103 chr1 223922025 223922492 -18741861 + MER4C LTR ERV1 1 465 0 2780 154 29 40 chr1 223922770 223923291 -18741062 + MLT2B2 LTR ERVL 1 515 0 380 294 0 0 chr1 223924162 223924288 -18740065 + A-rich Low_complexity Low_complexity 1 126 0 332 200 171 0 chr1 223924472 223924577 -18739776 - Charlie1 DNA MER1_type -1 2760 2638 1083 167 29 0 chr1 223924619 223924823 -18739530 - Charlie1 DNA MER1_type -1798 963 754 4804 163 85 21 chr1 223924826 223926077 -18738276 + L1MB3 LINE L1 1515 2685 -3722 2169 129 15 29 chr1 223926077 223926419 -18737934 - MER1B DNA MER1_type 0 337 1 4804 163 85 21 chr1 223926419 223927255 -18737098 + L1MB3 LINE L1 2685 6199 -208 413 141 0 39 chr1 223927286 223927364 -18736989 + L1MB3 LINE L1 6343 6417 -2 729 319 8 15 chr1 223927401 223927661 -18736692 - MIR SINE MIR 0 262 5 418 260 10 0 chr1 223927952 223928052 -18736301 + MIR SINE MIR 52 152 -110 594 248 19 13 chr1 223928427 223928584 -18735769 + Charlie2 DNA MER1_type 2 159 -2623 440 250 173 60 chr1 223928730 223929182 -18735171 + Charlie2 DNA MER1_type 1920 2422 -440 655 185 0 0 chr1 223929202 223929310 -18735043 - FLAM_C SINE Alu -24 119 12 413 149 40 13 chr1 223929552 223929623 -18734730 + (TG)n Simple_repeat Simple_repeat 1 69 -508 1763 155 52 9 chr1 223929623 223929952 -18734401 - MER61A LTR ERV1 0 343 1 413 149 40 13 chr1 223929952 223930114 -18734239 + (TG)n Simple_repeat Simple_repeat 69 577 0 1771 191 28 27 chr1 223931426 223931882 -18732471 + LTR2B LTR ERV1 1 490 0 1785 120 33 0 chr1 223932042 223932318 -18732035 + L1MA5A LINE L1 6006 6290 -7 21 36 0 0 chr1 223933897 223933925 -18730428 + AT_rich Low_complexity Low_complexity 1 28 0 1536 170 0 23 chr1 223933932 223934197 -18730156 + AluJo SINE Alu 39 297 -15 4255 126 26 0 chr1 223934235 223934854 -18729499 + MER41B LTR ERV1 1 635 0 21 0 0 0 chr1 223935100 223935121 -18729232 + AT_rich Low_complexity Low_complexity 1 21 0 617 61 73 6 chr1 223935125 223935289 -18729064 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 189 102 51 17 chr1 223935309 223935368 -18728985 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 565 151 17 21 chr1 223935368 223935430 -18728923 + (TA)n Simple_repeat Simple_repeat 1 62 -396 1877 138 51 0 chr1 223935430 223935706 -18728647 + AluSx SINE Alu 1 290 -22 565 151 17 21 chr1 223935706 223935828 -18728525 + (TA)n Simple_repeat Simple_repeat 62 458 0 397 141 0 0 chr1 223935843 223935907 -18728446 - AluJ/FRAM SINE Alu -17 285 222 325 307 81 32 chr1 223936180 223936463 -18727890 + L1MC4a LINE L1 4736 5032 -1114 2050 148 0 19 chr1 223936629 223936947 -18727406 + AluSx SINE Alu 1 312 0 651 318 70 50 chr1 223936980 223937640 -18726713 + L1MC4a LINE L1 5257 5929 -1879 24 41 0 20 chr1 223937818 223937851 -18726502 + AT_rich Low_complexity Low_complexity 1 34 -14 2283 67 0 18 chr1 223937851 223938134 -18726219 + AluY SINE Alu 1 278 -33 24 41 0 20 chr1 223938134 223938149 -18726204 + AT_rich Low_complexity Low_complexity 34 48 0 291 157 0 0 chr1 223938153 223938204 -18726149 + (CA)n Simple_repeat Simple_repeat 2 52 0 910 183 0 5 chr1 223938206 223938398 -18725955 - AluJb SINE Alu -22 290 7 189 309 73 18 chr1 223938442 223938552 -18725801 - MER5A DNA MER1_type -72 117 2 2562 65 0 3 chr1 223938700 223939006 -18725347 - AluY SINE Alu -6 305 1 194 224 0 61 chr1 223940130 223940179 -18724174 - L2 LINE L2 -1 3312 3267 271 329 24 0 chr1 223940233 223940318 -18724035 + L2 LINE L2 3227 3313 0 192 382 44 0 chr1 223940318 223940386 -18723967 - L2 LINE L2 -83 3189 3119 3900 198 45 33 chr1 223940622 223941451 -18722902 - MER21B LTR ERV1 -2 861 23 2846 164 98 25 chr1 223941459 223941762 -18722591 + MER7C DNA MER2_type 1 280 -2748 2267 97 3 31 chr1 223941762 223942083 -18722270 - AluSx SINE Alu 0 312 1 2846 164 98 25 chr1 223942083 223942340 -18722013 + MER7C DNA MER2_type 280 602 0 216 135 0 0 chr1 223942391 223942428 -18721925 + (TG)n Simple_repeat Simple_repeat 1 37 0 389 259 53 47 chr1 223942786 223942956 -18721397 + MIR SINE MIR 14 184 -78 211 208 0 0 chr1 223944205 223944253 -18720100 + MIR3 SINE MIR 108 155 -53 2198 102 10 13 chr1 223944563 223944868 -18719485 - AluSg SINE Alu -6 304 1 1124 142 6 0 chr1 223946393 223946562 -18717791 + FAM SINE Alu 2 171 -4 2316 174 37 2 chr1 223946731 223947139 -18717214 + MSTB LTR MaLR 1 422 -4 256 376 0 8 chr1 223948329 223948462 -18715891 + (CA)n Simple_repeat Simple_repeat 2 133 0 222 326 0 11 chr1 223948515 223948604 -18715749 + (CATA)n Simple_repeat Simple_repeat 2 89 0 311 279 61 54 chr1 223948740 223948887 -18715466 + MIR SINE MIR 56 203 -59 646 150 20 155 chr1 223949208 223949249 -18715104 - MER96B DNA MER1_type? -244 173 128 1821 167 0 10 chr1 223949249 223949542 -18714811 - AluJb SINE Alu -22 290 1 646 150 20 155 chr1 223949542 223949700 -18714653 - MER96B DNA MER1_type? -289 128 1 180 0 0 0 chr1 223950318 223950338 -18714015 + (T)n Simple_repeat Simple_repeat 1 20 0 985 192 146 4 chr1 223950398 223950658 -18713695 + L1MC3 LINE L1 7481 7777 -8 2648 127 28 9 chr1 223952292 223952652 -18711701 + MSTB1 LTR MaLR 1 372 -60 411 21 0 0 chr1 223952652 223952700 -18711653 + (TA)n Simple_repeat Simple_repeat 1 48 0 2648 127 28 9 chr1 223952700 223952763 -18711590 + MSTB1 LTR MaLR 372 432 0 368 217 7 80 chr1 223952855 223952993 -18711360 - L1MC5 LINE L1 -797 7164 7037 372 272 6 86 chr1 223953106 223953163 -18711190 - MIR SINE MIR -112 150 90 1748 169 0 46 chr1 223953163 223953488 -18710865 - AluSx SINE Alu -2 310 1 372 272 6 86 chr1 223953488 223953592 -18710761 - MIR SINE MIR -172 90 2 183 80 0 0 chr1 223953605 223953630 -18710723 + (T)n Simple_repeat Simple_repeat 1 25 0 2014 123 7 3 chr1 223954449 223954741 -18709612 + AluSx SINE Alu 2 294 -18 609 263 54 11 chr1 223954744 223954930 -18709423 - MIR SINE MIR -55 207 14 24 0 0 0 chr1 223955113 223955137 -18709216 + AT_rich Low_complexity Low_complexity 1 24 0 7809 206 103 58 chr1 223955494 223957192 -18707161 + L1MDa LINE L1 30 1650 -4890 2205 101 40 3 chr1 223957192 223957489 -18706864 - AluSx SINE Alu -4 308 1 7809 206 103 58 chr1 223957489 223958669 -18705684 + L1MDa LINE L1 1650 2775 -3765 2266 176 19 119 chr1 223958669 223959284 -18705069 + MLT2B3 LTR ERVL 1 554 0 7809 206 103 58 chr1 223959284 223960476 -18703877 + L1MDa LINE L1 2775 4280 -2260 1185 270 54 84 chr1 223960660 223961267 -18703086 + MER21B LTR ERV1 131 719 -144 4652 221 68 22 chr1 223961270 223962656 -18701697 + L1MDa LINE L1 4283 5733 -807 451 259 60 104 chr1 223962660 223962919 -18701434 + MLT1I LTR MaLR 89 331 -78 5095 144 160 23 chr1 223962919 223964043 -18700310 - MER52C LTR ERV1 0 1278 1 451 259 60 104 chr1 223964043 223964119 -18700234 + MLT1I LTR MaLR 331 409 0 276 286 68 20 chr1 223964441 223964588 -18699765 - L1M3 LINE L1 -665 5506 5353 666 214 0 0 chr1 223965292 223965409 -18698944 - FLAM_C SINE Alu -25 118 2 274 369 97 19 chr1 223965453 223965773 -18698580 + L2 LINE L2 2926 3270 -2 2067 123 14 0 chr1 223966239 223966368 -18697985 + AluSx SINE Alu 1 127 -183 2142 132 3 0 chr1 223966368 223966664 -18697689 + AluSx SINE Alu 1 297 -15 2067 123 14 0 chr1 223966664 223966840 -18697513 + AluSx SINE Alu 127 310 0 2276 133 3 27 chr1 223967003 223967378 -18696975 + L1PB3 LINE L1 5787 6152 -2 3476 153 58 18 chr1 223968828 223969375 -18694978 - L1MB3 LINE L1 0 6183 5602 2209 101 7 0 chr1 223969375 223969671 -18694682 - AluSx SINE Alu -14 298 1 3476 153 58 18 chr1 223969671 223969797 -18694556 - L1MB3 LINE L1 -581 5602 5483 2128 153 22 25 chr1 223970997 223971363 -18692990 + MLT1A1 LTR MaLR 1 365 0 197 276 102 10 chr1 223971647 223971745 -18692608 + L2 LINE L2 550 656 -2658 201 74 0 0 chr1 223972326 223972353 -18692000 + (CAGGG)n Simple_repeat Simple_repeat 3 29 0 1196 156 135 0 chr1 223972353 223972590 -18691763 - MER74A LTR ERVL -241 317 49 289 361 129 5 chr1 223972664 223972858 -18691495 + L2 LINE L2 2555 2772 -542 189 266 31 16 chr1 223972934 223972998 -18691355 + MIR3 SINE MIR 141 205 -3 215 241 0 19 chr1 223973090 223973144 -18691209 + CT-rich Low_complexity Low_complexity 2 54 0 446 258 101 44 chr1 223973285 223973444 -18690909 - MIR SINE MIR -15 247 80 2204 191 5 17 chr1 223973624 223974043 -18690310 - MLT2D LTR ERVL 0 414 1 2380 86 0 0 chr1 223974517 223974808 -18689545 + AluY SINE Alu 1 291 -20 859 270 116 65 chr1 223975053 223975527 -18688826 - MLT1J LTR MaLR -4 507 10 458 249 90 28 chr1 223975622 223975799 -18688554 + L1MC5 LINE L1 7724 7911 -50 2410 90 3 0 chr1 223975801 223976111 -18688242 + AluSq SINE Alu 1 311 -2 3135 129 8 17 chr1 223977768 223978289 -18686064 + L1MA4 LINE L1 5785 6300 0 1937 140 165 23 chr1 223978671 223979065 -18685288 - LTR47A LTR ERVL 0 452 3 767 162 18 36 chr1 223980088 223980255 -18684098 + MLT1A2 LTR MaLR 211 374 0 186 335 114 31 chr1 223980513 223980699 -18683654 - L2 LINE L2 -636 2678 2458 3205 211 25 9 chr1 223980699 223981340 -18683013 - MER82 DNA MER2_type 0 653 3 186 335 114 31 chr1 223981340 223981443 -18682910 - L2 LINE L2 -856 2458 2365 1501 171 88 55 chr1 223981580 223981869 -18682484 - MER44D DNA MER2_type -1882 609 331 2266 127 119 16 chr1 223981869 223982256 -18682097 - MSTA LTR MaLR 0 428 2 1501 171 88 55 chr1 223982256 223982294 -18682059 - MER44D DNA MER2_type -2160 331 1 210 276 0 17 chr1 223982649 223982707 -18681646 + GA-rich Low_complexity Low_complexity 3 59 0 1019 154 0 40 chr1 223982807 223982993 -18681360 - AluJo SINE Alu 0 312 133 378 0 0 0 chr1 223982993 223983035 -18681318 + (TA)n Simple_repeat Simple_repeat 2 43 0 1019 154 0 40 chr1 223983035 223983049 -18681304 - AluJo SINE Alu -179 133 120 264 193 6 0 chr1 223983087 223983146 -18681207 - Alu SINE Alu -261 41 1 1703 187 36 12 chr1 223983162 223983494 -18680859 + MER58B DNA MER1_type 1 340 -1 1993 92 58 20 chr1 223985044 223985337 -18679016 + AluSx SINE Alu 1 304 -8 2151 89 0 13 chr1 223985565 223985869 -18678484 - AluSg SINE Alu -10 300 1 229 188 0 129 chr1 223985894 223985995 -18678358 + L2 LINE L2 3224 3311 -2 1170 222 132 19 chr1 223987445 223987858 -18676495 + MLT1D LTR MaLR 1 484 -21 307 311 30 55 chr1 223988165 223988329 -18676024 + L2 LINE L2 3154 3313 0 244 306 128 45 chr1 223988343 223988725 -18675628 + L2 LINE L2 1962 2375 -939 185 71 0 0 chr1 223989820 223989848 -18674505 + L2 LINE L2 3286 3313 0 211 288 112 32 chr1 223990112 223990237 -18674116 - MIR3 SINE MIR -15 193 59 2001 100 7 7 chr1 223990406 223990687 -18673666 + AluSq SINE Alu 1 281 -32 324 0 0 0 chr1 223990687 223990723 -18673630 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 402 39 0 0 chr1 223990851 223990903 -18673450 + (CA)n Simple_repeat Simple_repeat 2 53 0 984 139 7 0 chr1 223992311 223992462 -18671891 + Tigger2 DNA MER2_type 1 152 -2566 1954 147 0 0 chr1 223992464 223992764 -18671589 + AluSx SINE Alu 1 300 -12 37 23 0 0 chr1 223992785 223992829 -18671524 + AT_rich Low_complexity Low_complexity 1 44 0 322 105 18 0 chr1 223992839 223992896 -18671457 + Tigger2 DNA MER2_type 136 193 -2525 * 731 192 53 13 chr1 223992887 223993038 -18671315 + Tigger2 DNA MER2_type 2561 2717 -1 197 412 35 26 chr1 223993045 223993159 -18671194 - L2 LINE L2 -56 3216 3102 411 306 211 25 chr1 223993383 223993933 -18670420 - L2 LINE L2 -433 2881 2230 264 312 193 0 chr1 223994897 223995006 -18669347 + MIR SINE MIR 2 131 -131 328 194 15 0 chr1 223995471 223995538 -18668815 + MER116 DNA Mariner 13 80 0 2290 177 18 0 chr1 223995800 223996189 -18668164 + MER57A LTR ERV1 8 403 0 1094 193 109 82 chr1 223996653 223997068 -18667285 + MER110A LTR ERV1 70 477 -10 298 296 33 59 chr1 223997094 223997246 -18667107 - L2 LINE L2 -54 3259 3112 242 274 32 0 chr1 223998721 223998783 -18665570 - MIR SINE MIR -179 83 20 584 120 46 35 chr1 223999223 223999510 -18664843 + (CA)n Simple_repeat Simple_repeat 1 290 0 558 105 42 28 chr1 223999526 223999821 -18664532 + (CA)n Simple_repeat Simple_repeat 1 299 0 471 111 35 35 chr1 223999863 224000035 -18664318 + (CA)n Simple_repeat Simple_repeat 1 172 0 682 109 32 24 chr1 224000094 224000345 -18664008 + (CA)n Simple_repeat Simple_repeat 1 253 0 1305 174 73 19 chr1 224001429 224001688 -18662665 + AluJo SINE Alu 10 282 -30 593 235 15 8 chr1 224001956 224002088 -18662265 + MER5A DNA MER1_type 55 187 -2 348 226 242 2 chr1 224002286 224002393 -18661960 - MIR SINE MIR -54 154 53 680 167 0 0 chr1 224003241 224003349 -18661004 - FLAM_A SINE Alu -34 108 1 3127 256 65 41 chr1 224003370 224003458 -18660895 - HAL1 LINE L1 -42 2465 2381 1288 168 88 71 chr1 224003458 224003755 -18660598 - AluJb SINE Alu 0 302 1 3127 256 65 41 chr1 224003755 224005024 -18659329 - HAL1 LINE L1 -126 2381 1075 2141 117 3 0 chr1 224006018 224006318 -18658035 - AluSx SINE Alu -11 301 1 2390 217 75 26 chr1 224006583 224007091 -18657262 + MLT1E2 LTR MaLR 1 472 -83 669 123 0 136 chr1 224007091 224007245 -18657108 + FLAM_A SINE Alu 1 133 0 2390 217 75 26 chr1 224007245 224007332 -18657021 + MLT1E2 LTR MaLR 472 553 -2 1588 74 5 0 chr1 224007334 224007537 -18656816 - LTR12 LTR ERV1 -23 691 488 258 221 106 71 chr1 224007537 224007650 -18656703 - LTR30 LTR ERV1 -73 721 544 4800 135 166 20 chr1 224007650 224008650 -18655703 - pTR5 LTR ERV1 -419 2019 741 198 176 0 0 chr1 224009180 224009231 -18655122 + CT-rich Low_complexity Low_complexity 2 52 0 252 0 0 0 chr1 224009231 224009259 -18655094 + (TG)n Simple_repeat Simple_repeat 1 28 0 350 241 235 25 chr1 224009276 224009438 -18654915 - L1ME3A LINE L1 -2 6168 5973 649 176 49 101 chr1 224009462 224009671 -18654682 - L1ME3A LINE L1 -168 6002 5829 2433 59 3 0 chr1 224010422 224010727 -18653626 - AluY SINE Alu -5 306 1 2547 210 21 12 chr1 224012624 224013186 -18651167 - L1MC3 LINE L1 -9 7776 7210 369 245 64 0 chr1 224013435 224013529 -18650824 + MLT1I LTR MaLR 299 398 -11 250 331 73 58 chr1 224014159 224014434 -18649919 + L2 LINE L2 2807 3085 -228 2354 142 29 3 chr1 224014508 224014888 -18649465 - MLT1B LTR MaLR 0 390 1 271 187 0 27 chr1 224014895 224014970 -18649383 + CT-rich Low_complexity Low_complexity 3 75 0 299 308 75 19 chr1 224015216 224015323 -18649030 + L2 LINE L2 3193 3305 -8 1637 142 42 35 chr1 224015468 224015756 -18648597 - AluJo SINE Alu -12 300 11 1561 175 21 3 chr1 224016801 224017092 -18647261 + AluJo SINE Alu 1 296 -16 215 261 43 0 chr1 224017341 224017410 -18646943 - L3 LINE CR1 -170 1407 1336 446 164 0 0 chr1 224017728 224017795 -18646558 + Tigger2 DNA MER2_type 1 67 -2651 * 2764 119 58 7 chr1 224017781 224018211 -18646142 + Tigger2 DNA MER2_type 2267 2718 0 580 280 72 19 chr1 224018392 224018656 -18645697 - LTR33 LTR ERVL -2 519 242 278 295 161 7 chr1 224018696 224018845 -18645508 - LTR33 LTR ERVL -345 176 5 252 248 46 83 chr1 224018874 224018983 -18645370 + L2 LINE L2 3160 3264 -8 338 324 38 7 chr1 224019301 224019436 -18644917 + MIR SINE MIR 31 169 -60 325 191 0 53 chr1 224019725 224019819 -18644534 + MER53 DNA DNA 19 107 -82 2255 87 3 0 chr1 224021083 224021381 -18642972 - AluSp SINE Alu -14 299 1 354 232 142 47 chr1 224021461 224021651 -18642702 + MIR SINE MIR 53 260 -2 305 321 90 25 chr1 224021762 224022039 -18642314 + LTR16B LTR ERVL 107 442 -8 2465 157 21 21 chr1 224022142 224022576 -18641777 + Tigger2a DNA MER2_type 1 434 0 372 258 20 23 chr1 224022924 224023062 -18641291 - MIR SINE MIR -67 141 8 341 234 37 19 chr1 224024821 224024950 -18639403 + LTR33A LTR ERVL 439 523 0 826 144 15 8 chr1 224025000 224025132 -18639221 - AluSq/x SINE Alu -179 133 1 231 401 33 6 chr1 224025265 224025447 -18638906 + MIR SINE MIR 6 192 -70 255 175 0 0 chr1 224025861 224025918 -18638435 + CT-rich Low_complexity Low_complexity 2 58 0 230 269 19 0 chr1 224028165 224028217 -18636136 - MLT1L LTR MaLR -415 200 148 999 171 0 12 chr1 224028637 224028801 -18635552 + FAM SINE Alu 6 167 -18 23 54 0 0 chr1 224028914 224028951 -18635402 + AT_rich Low_complexity Low_complexity 1 37 0 552 238 99 39 chr1 224031189 224031370 -18632983 + MLT1H1 LTR MaLR 357 548 -7 891 160 112 6 chr1 224033081 224033250 -18631103 + MLT1D LTR MaLR 319 505 0 575 282 89 43 chr1 224033621 224033993 -18630360 + Tigger8 DNA MER2_type 63 451 -215 473 272 69 65 chr1 224034040 224034257 -18630096 - MIR SINE MIR -10 252 35 256 326 155 21 chr1 224034285 224034472 -18629881 + L2 LINE L2 2818 3029 -284 224 277 48 0 chr1 224039799 224039882 -18624471 - L2 LINE L2 -2 3270 3184 781 166 0 43 chr1 224040364 224040503 -18623850 + FLAM_A SINE Alu 1 133 0 291 191 15 15 chr1 224042282 224042350 -18622003 - L2 LINE L2 -1 3271 3204 2186 106 0 0 chr1 224042595 224042887 -18621466 - AluSg1 SINE Alu -17 292 1 1707 132 54 51 chr1 224043027 224043323 -18621030 - AluJo SINE Alu -15 297 1 180 0 0 0 chr1 224045890 224045910 -18618443 + (T)n Simple_repeat Simple_repeat 1 20 0 29 28 0 0 chr1 224046123 224046159 -18618194 + GC_rich Low_complexity Low_complexity 1 36 0 25 90 0 0 chr1 224046280 224046347 -18618006 + GC_rich Low_complexity Low_complexity 1 67 0 189 74 0 0 chr1 224046728 224046755 -18617598 + (CGGG)n Simple_repeat Simple_repeat 2 28 0 26 74 0 0 chr1 224046809 224046863 -18617490 + GC_rich Low_complexity Low_complexity 1 54 0 644 251 163 9 chr1 224047564 224047779 -18616574 - MIR SINE MIR 0 262 15 919 238 93 28 chr1 224047847 224048135 -18616218 + MER69 DNA AcHobo 1 307 -919 265 302 28 88 chr1 224048135 224048317 -18616036 - MER96 DNA MER1_type? 0 175 5 1191 234 132 51 chr1 224048327 224048569 -18615784 + MER69 DNA AcHobo 303 524 -2002 1707 168 14 3 chr1 224048569 224048866 -18615487 + AluJb SINE Alu 6 305 -7 1191 234 132 51 chr1 224048866 224049093 -18615260 + MER69 DNA AcHobo 524 810 -1716 * 1262 189 94 9 chr1 224049087 224049405 -18614948 + MER69 DNA AcHobo 2181 2525 -1 427 264 79 7 chr1 224049852 224049992 -18614361 + L2 LINE L2 3149 3298 -15 489 193 18 9 chr1 224050545 224050654 -18613699 + MER69 DNA AcHobo 2416 2525 -1 22 35 0 0 chr1 224051213 224051242 -18613111 + AT_rich Low_complexity Low_complexity 1 29 0 512 279 177 14 chr1 224051539 224051822 -18612531 + MLT2E LTR ERVL 4 332 -296 266 234 149 0 chr1 224051965 224052059 -18612294 + MLT2E LTR ERVL 519 626 -2 391 318 21 42 chr1 224052432 224052621 -18611732 - MLT1J2 LTR MaLR 0 450 266 819 267 116 49 chr1 224052741 224052977 -18611376 + L1ME3A LINE L1 5694 5913 -257 2245 127 0 0 chr1 224052977 224053285 -18611068 + AluSg SINE Alu 1 308 -2 819 267 116 49 chr1 224053285 224053479 -18610874 + L1ME3A LINE L1 5913 6153 -17 1278 189 0 13 chr1 224054640 224054873 -18609480 + AluJb SINE Alu 81 310 -2 283 296 51 0 chr1 224055353 224055451 -18608902 - MIR SINE MIR -58 204 102 2244 104 0 3 chr1 224055489 224055787 -18608566 - AluSg SINE Alu -13 297 1 24 0 0 0 chr1 224057123 224057147 -18607206 + AT_rich Low_complexity Low_complexity 1 24 0 1440 149 3 53 chr1 224057421 224057555 -18606798 + L1MA9 LINE L1 6021 6160 -152 847 151 0 0 chr1 224057555 224057681 -18606672 + FLAM_C SINE Alu 2 127 -6 1440 149 3 53 chr1 224057681 224057848 -18606505 + L1MA9 LINE L1 6160 6307 -5 908 278 206 18 chr1 224057955 224058420 -18605933 - L2 LINE L2 0 3313 2937 3911 104 60 24 chr1 224058420 224059042 -18605311 + LTR9B LTR ERV1 1 644 0 908 278 206 18 chr1 224059042 224059250 -18605103 - L2 LINE L2 -376 2937 2770 2342 89 0 0 chr1 224059250 224059542 -18604811 + AluSc SINE Alu 1 292 -17 908 278 206 18 chr1 224059542 224059868 -18604485 - L2 LINE L2 -543 2770 2110 2053 85 48 20 chr1 224060218 224060512 -18603841 + AluSq SINE Alu 1 302 -11 21 0 0 0 chr1 224060735 224060756 -18603597 + AT_rich Low_complexity Low_complexity 1 21 0 2266 92 17 0 chr1 224060854 224061147 -18603206 - AluSq SINE Alu -11 302 5 188 220 20 20 chr1 224061370 224061420 -18602933 + MIR SINE MIR 91 140 -68 2293 141 44 6 chr1 224061420 224061783 -18602570 - MLT1B LTR MaLR -3 387 11 823 159 0 0 chr1 224061999 224062125 -18602228 - FLAM_C SINE Alu -17 126 1 2083 148 0 0 chr1 224062425 224062723 -18601630 - AluSx SINE Alu -14 298 1 231 254 0 0 chr1 224062918 224062973 -18601380 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 581 175 149 0 chr1 224063712 224063826 -18600527 + MLT1F1 LTR MaLR 437 567 0 218 242 15 0 chr1 224065399 224065465 -18598888 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 364 319 0 0 chr1 224065495 224065608 -18598745 - L2 LINE L2 -4 3309 3197 250 316 26 34 chr1 224065676 224065793 -18598560 + L2 LINE L2 3198 3313 0 1685 173 10 20 chr1 224065955 224066255 -18598098 + AluJo SINE Alu 3 299 -13 1029 286 48 74 chr1 224066537 224067129 -18597224 + L1 LINE L1 2659 3265 -2881 2502 86 0 0 chr1 224067129 224067430 -18596923 + AluSg SINE Alu 1 301 -9 1029 286 48 74 chr1 224067430 224068153 -18596200 + L1 LINE L1 3265 3940 -2206 1904 177 83 8 chr1 224068166 224068538 -18595815 - MER21B LTR ERV1 -3 860 461 1016 132 0 54 chr1 224068538 224068705 -18595648 + AluJo SINE Alu 1 158 -154 2421 161 44 0 chr1 224068745 224069135 -18595218 - MER21B LTR ERV1 -456 407 1 450 0 0 0 chr1 224069292 224069342 -18595011 + (TTTTA)n Simple_repeat Simple_repeat 3 52 0 38238 33 24 1 chr1 224069347 224074760 -18589593 - L1PA3 LINE L1 0 6155 617 761 35 0 0 chr1 224074754 224074841 -18589512 - L1PA3 LINE L1 -6048 98 12 * 414 0 0 0 chr1 224074869 224074915 -18589438 + (CA)n Simple_repeat Simple_repeat 2 47 0 983 117 6 0 chr1 224074915 224075077 -18589276 + (TA)n Simple_repeat Simple_repeat 2 164 0 776 296 28 38 chr1 224075088 224075511 -18588842 + L1 LINE L1 4018 4436 -1710 2363 148 55 16 chr1 224075528 224075912 -18588441 + MER57A LTR ERV1 5 403 0 3059 189 11 79 chr1 224075912 224076105 -18588248 + MER57A-int LTR ERV1 1 206 -7331 2267 109 0 3 chr1 224076105 224076409 -18587944 - AluSq SINE Alu -10 303 1 3059 189 11 79 chr1 224076409 224076909 -18587444 + MER57A-int LTR ERV1 206 647 -6890 829 115 16 193 chr1 224076949 224077069 -18587284 + MER57A-int LTR ERV1 649 788 -6749 1915 142 7 3 chr1 224077069 224077374 -18586979 + AluSx SINE Alu 1 306 0 829 115 16 193 chr1 224077374 224077422 -18586931 + MER57A-int LTR ERV1 788 843 -6694 1716 154 10 33 chr1 224077422 224077728 -18586625 + AluSx SINE Alu 10 308 -4 829 115 16 193 chr1 224077728 224077777 -18586576 + MER57A-int LTR ERV1 843 825 -6712 4501 84 29 0 chr1 224077777 224078360 -18585993 - MER4A LTR ERV1 0 600 1 829 115 16 193 chr1 224078360 224078383 -18585970 + MER57A-int LTR ERV1 824 849 -6688 490 271 13 32 chr1 224078477 224078632 -18585721 + MER57A-int LTR ERV1 841 992 -4131 2358 82 0 0 chr1 224078632 224078926 -18585427 - AluY SINE Alu -17 294 1 556 265 141 34 chr1 224078931 224079165 -18585188 + MER34C LTR ERV1 155 413 -172 346 214 86 79 chr1 224079165 224079384 -18584969 + MER57A-int LTR ERV1 1206 1982 -3729 * 379 250 12 85 chr1 224079374 224079538 -18584815 + LTR57-int LTR ERVL 1011 1162 -4181 * 1272 158 7 70 chr1 224079391 224079663 -18584690 + MER57A-int LTR ERV1 3086 3340 -2991 485 214 20 0 chr1 224079720 224079818 -18584535 + MER57A-int LTR ERV1 3354 3453 -2878 771 199 57 32 chr1 224079932 224080372 -18583981 + MER57-int LTR ERV1 1721 2207 -2916 5906 180 60 65 chr1 224080427 224081074 -18583279 + MER57-int LTR ERV1 3638 4287 -3120 1857 168 0 7 chr1 224081074 224081366 -18582987 - AluJo SINE Alu -22 290 1 5906 180 60 65 chr1 224081366 224082375 -18581978 + MER57-int LTR ERV1 4287 5820 -1587 1867 148 0 46 chr1 224082695 224083020 -18581333 - AluJo SINE Alu -2 310 1 754 181 0 94 chr1 224083037 224083208 -18581145 + MER57-int LTR ERV1 5825 5979 -1558 * 4788 172 20 20 chr1 224083200 224084066 -18580287 + MER57-int LTR ERV1 6146 7011 -526 235 188 47 0 chr1 224084071 224084135 -18580218 + L1MB4 LINE L1 6114 6180 0 558 355 93 17 chr1 224084255 224084663 -18579690 - ERVL LTR ERVL -4081 1683 1245 2001 138 3 3 chr1 224085324 224085622 -18578731 + AluJb SINE Alu 1 298 -14 4217 165 112 21 chr1 224086089 224086878 -18577475 + MER21B LTR ERV1 1 860 -3 1771 195 0 0 chr1 224086901 224087204 -18577149 + AluJb SINE Alu 1 303 -9 4192 83 40 0 chr1 224087299 224087853 -18576500 + L1PA11 LINE L1 5597 6172 -2 2178 96 0 3 chr1 224088406 224088697 -18575656 + AluSg SINE Alu 2 291 -19 21 0 0 0 chr1 224089237 224089258 -18575095 + AT_rich Low_complexity Low_complexity 1 21 0 766 161 27 0 chr1 224089436 224089548 -18574805 + FLAM_C SINE Alu 1 115 -18 30 0 0 0 chr1 224089548 224089578 -18574775 + AT_rich Low_complexity Low_complexity 1 30 0 3779 139 84 0 chr1 224090431 224090737 -18573616 + L1MC1 LINE L1 5662 5941 -392 243 0 0 0 chr1 224090737 224090764 -18573589 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 3779 139 84 0 chr1 224090764 224091077 -18573276 + L1MC1 LINE L1 5941 6333 0 2041 106 11 0 chr1 224091261 224091543 -18572810 + AluSq SINE Alu 7 291 -22 2434 72 13 0 chr1 224091549 224091854 -18572499 + AluSp SINE Alu 1 309 -4 659 87 0 78 chr1 224091864 224091979 -18572374 + MER50 LTR ERV1 499 604 -130 2296 137 18 18 chr1 224092292 224092629 -18571724 - MER1B DNA MER1_type 0 337 1 279 282 117 10 chr1 224094010 224094074 -18570279 - L2 LINE L2 -17 3296 3240 198 0 0 0 chr1 224094074 224094096 -18570257 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 279 282 117 10 chr1 224094096 224094134 -18570219 - L2 LINE L2 -73 3240 3183 396 125 0 0 chr1 224094161 224094225 -18570128 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 208 211 0 0 chr1 224094228 224094266 -18570087 + G-rich Low_complexity Low_complexity 1 38 0 2185 110 3 0 chr1 224095131 224095421 -18568932 + AluSx SINE Alu 1 291 -21 306 143 0 0 chr1 224095518 224095567 -18568786 + MADE1 DNA Mariner 32 80 0 21 36 0 0 chr1 224095708 224095736 -18568617 + AT_rich Low_complexity Low_complexity 1 28 0 553 164 52 0 chr1 224095742 224095858 -18568495 - L1MB4 LINE L1 -35 6145 6024 217 369 108 6 chr1 224095901 224096058 -18568295 - MIR SINE MIR -45 217 45 4059 98 14 25 chr1 224096793 224097353 -18567000 + MER41A LTR ERV1 1 554 0 227 233 81 35 chr1 224097364 224097450 -18566903 + L2 LINE L2 2426 2515 -799 250 273 0 100 chr1 224097472 224097546 -18566807 + MER94 DNA DNA 3 83 -51 1739 161 21 0 chr1 224097546 224097832 -18566521 + AluJb SINE Alu 1 292 -20 2098 127 3 0 chr1 224097834 224098142 -18566211 + AluSx SINE Alu 1 309 -3 250 273 0 100 chr1 224098142 224098174 -18566179 + MER94 DNA DNA 84 101 -33 448 145 81 65 chr1 224098367 224098491 -18565862 + MER4D LTR ERV1 778 903 0 741 209 63 29 chr1 224099612 224099818 -18564535 + LTR7 LTR ERV1 238 450 0 6881 216 34 47 chr1 224099818 224102706 -18561647 + HERVH LTR ERV1 1 2830 -4073 2256 143 0 66 chr1 224102706 224102776 -18561577 + HERVH LTR ERV1 3357 3430 -4283 2917 3 0 0 chr1 224102776 224103087 -18561266 + AluYa5 SINE Alu 1 311 0 2256 143 0 66 chr1 224103087 224103423 -18560930 + HERVH LTR ERV1 3430 3736 -3977 6769 105 1 2 chr1 224103433 224104362 -18559991 + HERVH LTR ERV1 3995 4910 -2803 1564 160 38 7 chr1 224104362 224104650 -18559703 + HERVH LTR ERV1 5747 6043 -1670 * 3688 100 14 18 chr1 224104620 224105179 -18559174 + HERVH LTR ERV1 7157 7713 0 1409 187 106 67 chr1 224105179 224105612 -18558741 + LTR7 LTR ERV1 1 450 0 758 177 0 54 chr1 224105669 224105799 -18558554 - FLAM_C SINE Alu -8 125 3 600 234 158 91 chr1 224105820 224105903 -18558450 + LTR56 LTR ERV1 12 88 -357 728 197 0 24 chr1 224105903 224106030 -18558323 + FLAM_C SINE Alu 4 127 -6 600 234 158 91 chr1 224106030 224106352 -18558001 + LTR56 LTR ERV1 88 444 -1 2264 244 134 38 chr1 224106465 224107142 -18557211 + L1ME3A LINE L1 4336 4947 -1223 2535 58 3 10 chr1 224107142 224107451 -18556902 + AluY SINE Alu 1 307 -4 2264 244 134 38 chr1 224107451 224107529 -18556824 + L1ME3A LINE L1 4947 5016 -1154 2239 105 3 0 chr1 224107529 224107824 -18556529 + AluSq SINE Alu 5 300 -13 2264 244 134 38 chr1 224107824 224108348 -18556005 + L1ME3A LINE L1 5016 5488 -682 2338 144 123 5 chr1 224108348 224108731 -18555622 - MSTA LTR MaLR 0 428 1 2264 244 134 38 chr1 224108731 224109093 -18555260 + L1ME3A LINE L1 5488 6132 -38 1955 127 21 3 chr1 224109708 224109991 -18554362 + AluSq SINE Alu 1 288 -25 2211 114 13 0 chr1 224110430 224110736 -18553617 - AluSx SINE Alu -2 310 1 23 0 0 0 chr1 224110766 224110789 -18553564 + AT_rich Low_complexity Low_complexity 1 23 0 2171 132 119 57 chr1 224110825 224110866 -18553487 - MSTA LTR MaLR 0 428 391 2115 125 0 3 chr1 224110866 224111155 -18553198 + AluSx SINE Alu 1 288 -24 2171 132 119 57 chr1 224111155 224111516 -18552837 - MSTA LTR MaLR -37 391 1 245 111 0 89 chr1 224111964 224112009 -18552344 + L2 LINE L2 3028 3068 -245 380 271 0 0 chr1 224113469 224113554 -18550799 + HsTC2 DNA Tc2 3 87 -1811 2195 212 160 71 chr1 224113589 224114334 -18550019 - MER21B LTR ERV1 -52 811 1 233 316 118 62 chr1 224114724 224115012 -18549341 + L2 LINE L2 2964 3267 -5 2119 124 9 0 chr1 224115565 224115880 -18548473 + L1MA5A LINE L1 5979 6296 -1 1953 143 14 7 chr1 224115911 224116204 -18548149 + AluSx SINE Alu 1 295 -17 528 78 22 44 chr1 224116244 224116334 -18548019 + MER74A LTR ERVL 1 88 -470 1060 243 18 18 chr1 224116336 224116562 -18547791 + MLT2B2 LTR ERVL 99 324 -191 584 224 24 61 chr1 224116826 224116991 -18547362 + MIR SINE MIR 89 247 -15 557 278 134 5 chr1 224117004 224117191 -18547162 + MIR SINE MIR 19 229 -33 2049 88 3 62 chr1 224117219 224117524 -18546829 + AluSq SINE Alu 1 287 -26 716 247 86 29 chr1 224117615 224117858 -18546495 - Cheshire DNA MER1_type -1490 930 674 1661 127 31 4 chr1 224117859 224118119 -18546234 + AluJb SINE Alu 1 267 -45 495 48 0 0 chr1 224118119 224118152 -18546201 + (GGGGA)n Simple_repeat Simple_repeat 1 95 0 495 48 0 0 chr1 224118152 224118214 -18546139 + (GGGGA)n Simple_repeat Simple_repeat 5 66 0 2440 93 0 0 chr1 224118238 224118599 -18545754 + AluSx SINE Alu 1 361 0 596 221 30 0 chr1 224118685 224118816 -18545537 - Cheshire DNA MER1_type -1769 651 517 * 1195 279 78 8 chr1 224118808 224119181 -18545172 - Cheshire DNA MER1_type -2021 399 1 323 271 12 0 chr1 224119227 224119312 -18545041 - HERV16 LTR ERVL -2623 2373 2288 4239 63 0 2 chr1 224119364 224119887 -18544466 - L1PA6 LINE L1 -37 6117 5596 537 190 0 0 chr1 224319887 224319966 -18344387 - AluJ/FLAM SINE Alu -232 80 2 281 258 150 33 chr1 224320982 224321102 -18343251 + LTR67 LTR ERVL 6 139 -418 605 214 27 9 chr1 224321152 224321264 -18343089 + MER81 DNA DNA 1 114 0 2601 196 52 19 chr1 224321754 224322294 -18342059 - MER74A LTR ERVL 0 558 1 193 143 20 20 chr1 224322901 224322950 -18341403 + CT-rich Low_complexity Low_complexity 2 50 0 2115 161 63 0 chr1 224323017 224323415 -18340938 + MSTB1 LTR MaLR 10 432 0 569 244 32 19 chr1 224324139 224324295 -18340058 - MER103 DNA DNA -1 165 8 2523 48 3 0 chr1 224324430 224324720 -18339633 - AluY SINE Alu -20 291 1 505 329 77 13 chr1 224325322 224325477 -18338876 + MER91A DNA MER1_type 5 169 -27 2091 121 7 10 chr1 224325825 224326132 -18338221 - AluSp SINE Alu -3 310 5 1202 58 0 0 chr1 224326135 224326272 -18338081 - AluSq/x SINE Alu -176 137 1 219 301 129 0 chr1 224326825 224326918 -18337435 + L2 LINE L2 1684 1788 -1526 2184 275 47 41 chr1 224326924 224327968 -18336385 + L1MEc LINE L1 464 1513 -5312 * 2546 213 34 132 chr1 224327959 224328863 -18335490 + L1MEc LINE L1 2868 3617 -3027 1895 110 40 4 chr1 224328863 224329159 -18335194 + AluSx SINE Alu 1 306 0 2546 213 34 132 chr1 224329159 224329513 -18334840 + L1MEc LINE L1 3617 4004 -2640 2699 177 40 43 chr1 224329520 224329935 -18334418 + L1MC3 LINE L1 7199 7613 -172 2029 130 0 14 chr1 224329935 224330228 -18334125 + AluSx SINE Alu 1 289 -23 2699 177 40 43 chr1 224330228 224330393 -18333960 + L1MC3 LINE L1 7613 7777 -8 369 0 0 0 chr1 224330397 224330438 -18333915 + (CA)n Simple_repeat Simple_repeat 2 42 0 552 15 0 0 chr1 224330439 224330504 -18333849 + (GA)n Simple_repeat Simple_repeat 2 66 0 2791 214 60 95 chr1 224330504 224330882 -18333471 + L1MEc LINE L1 4015 4405 -2239 1840 181 3 0 chr1 224330882 224331181 -18333172 + AluJo SINE Alu 9 308 -4 2791 214 60 95 chr1 224331181 224331933 -18332420 + L1MEc LINE L1 4405 5106 -1538 1174 94 6 6 chr1 224331993 224332173 -18332180 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 368 40 20 0 chr1 224332173 224332223 -18332130 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 250 143 0 0 chr1 224332270 224332305 -18332048 - Alu SINE Alu -267 35 1 750 206 72 0 chr1 224332305 224332485 -18331868 + L1MEc LINE L1 5120 5312 -1332 * 1051 177 93 0 chr1 224332483 224332540 -18331813 + L1MEc LINE L1 5 55 -6487 2628 121 8 3 chr1 224332540 224332903 -18331450 - MER47A DNA MER2_type -1 365 1 1051 177 93 0 chr1 224332903 224332963 -18331390 + L1MEc LINE L1 55 108 -6434 5261 143 6 18 chr1 224332963 224333755 -18330598 - LTR39 LTR ERV1 0 783 1 1051 177 93 0 chr1 224333755 224333862 -18330491 + L1MEc LINE L1 108 251 -6291 207 0 0 0 chr1 224333862 224333885 -18330468 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2895 207 20 31 chr1 224333906 224334037 -18330316 + L1MEc LINE L1 1477 1608 -5038 1774 107 64 54 chr1 224334037 224334348 -18330005 + AluSx SINE Alu 1 314 0 2895 207 20 31 chr1 224334348 224334931 -18329422 + L1MEc LINE L1 1608 2184 -4462 1425 220 91 29 chr1 224334935 224335385 -18328968 + L1MEc LINE L1 5303 5780 -864 409 151 0 14 chr1 224335390 224335463 -18328890 - L1MB3 LINE L1 -10 6173 6102 23 0 0 0 chr1 224335717 224335740 -18328613 + AT_rich Low_complexity Low_complexity 1 23 0 807 120 0 0 chr1 224335846 224335963 -18328390 - AluSg/x SINE Alu -10 302 186 34 0 0 0 chr1 224336296 224336330 -18328023 + AT_rich Low_complexity Low_complexity 1 34 0 672 245 130 37 chr1 224336333 224336661 -18327692 - L1ME4a LINE L1 -13 6108 5729 2372 99 0 0 chr1 224336661 224336965 -18327388 + AluSg SINE Alu 1 304 -6 672 245 130 37 chr1 224336965 224337068 -18327285 - L1ME4a LINE L1 -392 5729 5637 422 246 98 0 chr1 224337416 224337538 -18326815 - MIR SINE MIR -59 203 70 823 220 46 23 chr1 224337616 224337834 -18326519 + MIR SINE MIR 8 230 -32 956 206 11 0 chr1 224337884 224338059 -18326294 - MER77 LTR ERV1 -70 535 359 322 308 31 57 chr1 224338467 224338626 -18325727 + MIR SINE MIR 34 188 -74 657 182 0 0 chr1 224338637 224338736 -18325617 + AluJ/FLAM SINE Alu 2 100 -212 1055 133 11 28 chr1 224338823 224339003 -18325350 + AluJo SINE Alu 119 295 -17 186 244 0 0 chr1 224339014 224339055 -18325298 + MIR SINE MIR 220 260 -2 2504 155 68 15 chr1 224339709 224340180 -18324173 + LTR54B LTR ERV1 1 496 -2 2428 130 12 3 chr1 224340883 224341222 -18323131 + MER61A LTR ERV1 2 343 0 419 180 0 0 chr1 224341479 224341540 -18322813 + AluJ/FLAM SINE Alu 2 62 -250 1683 99 5 0 chr1 224341542 224341765 -18322588 - AluSp SINE Alu -8 305 82 1941 218 35 106 chr1 224341765 224342517 -18321836 - L1MEc LINE L1 -2099 4116 3419 2016 185 76 7 chr1 224342522 224342954 -18321399 + MLT1C LTR MaLR 6 467 0 4113 223 52 27 chr1 224342955 224344297 -18320056 - L1MEc LINE L1 -2793 3422 2089 234 62 0 0 chr1 224344298 224344330 -18320023 + (TCTCCC)n Simple_repeat Simple_repeat 2 33 0 10462 44 74 7 chr1 224344330 224345625 -18318728 + SVA Other Other 1 1382 -4 308 244 0 24 chr1 224345642 224345724 -18318629 + L1MC4a LINE L1 5309 5388 -2420 31 0 0 0 chr1 224345970 224346001 -18318352 + AT_rich Low_complexity Low_complexity 1 31 0 931 232 8 12 chr1 224346001 224346242 -18318111 + AluY SINE Alu 1 240 -71 2277 57 0 3 chr1 224346361 224346668 -18317685 + AluY SINE Alu 1 306 0 1956 231 84 13 chr1 224347135 224347740 -18316613 - MER114 LTR ERV 0 648 1 2088 106 0 20 chr1 224348023 224348359 -18315994 - AluSc SINE Alu 0 309 1 524 208 123 0 chr1 224348567 224348673 -18315680 - FLAM_A SINE Alu -17 125 7 632 215 63 43 chr1 224350467 224350710 -18313643 - MIR SINE MIR -25 237 3 2541 81 0 0 chr1 224351448 224351758 -18312595 - AluSg SINE Alu 0 310 1 204 207 0 69 chr1 224353062 224353120 -18311233 - L2 LINE L2 -15 3257 3204 283 271 7 42 chr1 224353349 224353401 -18310952 + GA-rich Low_complexity Low_complexity 2 54 -86 216 0 0 0 chr1 224353401 224353425 -18310928 + (CA)n Simple_repeat Simple_repeat 1 24 0 283 271 7 42 chr1 224353425 224353516 -18310837 + GA-rich Low_complexity Low_complexity 54 140 0 2195 123 10 0 chr1 224353839 224354139 -18310214 - AluSg SINE Alu -7 303 1 1383 251 109 25 chr1 224354172 224354694 -18309659 - LTR48B LTR ERV1 -75 569 4 2498 144 19 16 chr1 224355236 224355667 -18308686 - L1MA4A LINE L1 -8 6295 5864 227 167 0 0 chr1 224356089 224356125 -18308228 - LTR33 LTR ERVL -485 36 1 340 254 126 60 chr1 224356135 224356267 -18308086 + L1MC4a LINE L1 5684 5806 -315 1444 191 110 3 chr1 224356267 224356576 -18307777 - MER2 DNA MER2_type -2 342 1 340 254 126 60 chr1 224356576 224356861 -18307492 + L1MC4a LINE L1 5806 6117 -4 642 262 48 104 chr1 224356983 224357376 -18306977 + L2 LINE L2 2943 3313 0 366 306 41 48 chr1 224357454 224357601 -18306752 + MIR SINE MIR 2 147 -115 3090 249 96 6 chr1 224357601 224358483 -18305870 + L1MEc LINE L1 22 983 -5413 2019 259 56 21 chr1 224358546 224358991 -18305362 + L1MEc LINE L1 1412 1860 -1091 2232 121 0 0 chr1 224358991 224359296 -18305057 - AluY SINE Alu -6 305 1 2019 259 56 21 chr1 224359296 224359541 -18304812 + L1MEc LINE L1 1860 2095 -856 294 50 0 0 chr1 224359541 224359581 -18304772 + (T)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr1 224359594 224359617 -18304736 + AT_rich Low_complexity Low_complexity 1 23 0 4024 129 3 5 chr1 224359671 224360254 -18304099 - SVA Other Other -4 1382 801 2335 93 0 7 chr1 224360655 224360956 -18303397 - AluSx SINE Alu -13 299 1 22 70 0 0 chr1 224361760 224361803 -18302550 + AT_rich Low_complexity Low_complexity 1 43 0 235 246 0 16 chr1 224361822 224361883 -18302470 + MER94 DNA DNA 71 130 -4 715 323 45 22 chr1 224361920 224362475 -18301878 + L1MEc LINE L1 1253 1820 -4576 379 196 9 19 chr1 224363278 224363385 -18300968 - L1M4 LINE L1 -2813 3333 3228 2215 251 38 36 chr1 224363385 224364127 -18300226 + L1ME3A LINE L1 5393 6135 -35 313 277 52 13 chr1 224364307 224364462 -18299891 - L1ME4a LINE L1 0 6121 5961 425 271 105 20 chr1 224364589 224364836 -18299517 - L1ME4a LINE L1 -315 5806 5539 192 328 70 31 chr1 224365752 224365880 -18298473 - L2 LINE L2 -2 3270 3138 2009 127 41 0 chr1 224366168 224366459 -18297894 + AluSc SINE Alu 1 303 -6 292 287 176 0 chr1 224366997 224367105 -18297248 - L2 LINE L2 -19 3294 3168 1380 189 16 0 chr1 224367261 224367515 -18296838 - MLT1B LTR MaLR 0 390 133 291 28 0 0 chr1 224367530 224367566 -18296787 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1885 184 6 12 chr1 224367566 224367898 -18296455 - MLT1A1 LTR MaLR -35 330 1 832 125 15 15 chr1 224367898 224368034 -18296319 - MLT1B LTR MaLR -254 136 1 224 369 0 0 chr1 224368122 224368206 -18296147 - MIR SINE MIR -131 131 48 181 370 0 0 chr1 224368400 224368481 -18295872 + MIR SINE MIR 60 140 -122 322 348 7 7 chr1 224369852 224370007 -18294346 + GA-rich Low_complexity Low_complexity 2 156 0 1689 254 97 48 chr1 224370662 224372230 -18292123 - L1ME4a LINE L1 -987 5159 3494 260 157 59 69 chr1 224372235 224372250 -18292103 - L1MA10 LINE L1 -1 6333 6319 3087 218 88 15 chr1 224372250 224373736 -18290617 - L1ME1 LINE L1 -6 6955 5361 * 3418 246 51 41 chr1 224373720 224376421 -18287932 - L1ME1 LINE L1 -2857 4084 1170 420 20 0 0 chr1 224376421 224376470 -18287883 + (TG)n Simple_repeat Simple_repeat 2 50 0 3418 246 51 41 chr1 224376470 224376815 -18287538 - L1ME1 LINE L1 -5771 1170 830 2313 258 43 20 chr1 224377274 224377925 -18286428 - L1ME1 LINE L1 -5752 671 6 1368 273 107 31 chr1 224377920 224378944 -18285409 - L1M4 LINE L1 -2640 3506 2405 * 1521 193 39 7 chr1 224378970 224379255 -18285098 - AluJo SINE Alu -18 294 1 436 233 238 11 chr1 224379338 224379527 -18284826 + MIR SINE MIR 29 260 -2 194 272 138 65 chr1 224381373 224381619 -18282734 + L2 LINE L2 1775 2038 -1276 * 418 254 15 46 chr1 224381609 224381739 -18282614 - L2 LINE L2 0 3313 3188 202 322 70 18 chr1 224381798 224381969 -18282384 - L2 LINE L2 -129 3184 3005 257 366 0 0 chr1 224382146 224382321 -18282032 + (ACTAG)n Simple_repeat Simple_repeat 5 179 0 367 328 160 21 chr1 224382338 224382670 -18281683 - L2 LINE L2 -422 2892 2515 223 355 26 0 chr1 224383145 224383221 -18281132 - MIR SINE MIR -97 111 34 1679 206 173 9 chr1 224384831 224385277 -18279076 + LTR40a LTR ERVL 1 519 0 26 0 0 0 chr1 224385558 224385584 -18278769 + AT_rich Low_complexity Low_complexity 1 26 0 785 260 31 12 chr1 224385690 224385948 -18278405 + L1MCc LINE L1 23 285 -6138 1021 269 74 9 chr1 224385966 224386290 -18278063 + L1MCc LINE L1 2250 2594 -4528 954 186 87 11 chr1 224386291 224386474 -18277879 - MER58A DNA MER1_type 0 224 28 1456 211 82 72 chr1 224386542 224387115 -18277238 + L1MCc LINE L1 2647 3225 -3897 1345 333 90 31 chr1 224387167 224387661 -18276692 - HERVL LTR ERVL -2578 3076 2612 2096 115 0 11 chr1 224387661 224387948 -18276405 + AluSx SINE Alu 1 284 -28 381 22 0 0 chr1 224387949 224387995 -18276358 + (GA)n Simple_repeat Simple_repeat 1 46 0 1345 333 90 31 chr1 224387995 224388442 -18275911 - HERVL LTR ERVL -3041 2613 2039 830 305 45 7 chr1 224388534 224388961 -18275392 - HERVL LTR ERVL -3104 1892 1453 453 307 121 22 chr1 224389107 224389338 -18275015 - HERVL LTR ERVL -3785 1211 958 915 210 98 5 chr1 224389478 224389683 -18274670 + MER58A DNA MER1_type 1 224 0 488 352 65 9 chr1 224389807 224390037 -18274316 - HERVL LTR ERVL -4344 652 410 569 216 165 16 chr1 224390427 224390543 -18273810 - LTR50 LTR ERVL 0 795 698 502 259 9 0 chr1 224390543 224390655 -18273698 - MER81 DNA DNA 0 114 2 569 216 165 16 chr1 224390655 224390732 -18273621 - LTR50 LTR ERVL -97 698 573 834 221 215 33 chr1 224390734 224391064 -18273289 - LTR50 LTR ERVL -362 433 44 384 206 14 0 chr1 224391280 224391353 -18273000 - LTR16C LTR ERVL 0 491 418 761 242 41 14 chr1 224391762 224391981 -18272372 - LTR16C LTR ERVL 0 491 267 394 217 65 22 chr1 224392035 224392127 -18272226 - LTR16C LTR ERVL -313 178 83 2118 125 55 14 chr1 224392349 224392693 -18271660 - MER46B DNA MER2_type 0 236 4 264 274 0 0 chr1 224392695 224392757 -18271596 - MIR SINE MIR -108 154 93 385 291 20 14 chr1 224393301 224393449 -18270904 - L1MC5 LINE L1 -70 7891 7743 284 271 52 62 chr1 224393464 224393560 -18270793 - MER5A DNA MER1_type -49 139 35 206 356 110 8 chr1 224393569 224393687 -18270666 + MIR SINE MIR 5 134 -128 191 259 0 19 chr1 224393706 224393760 -18270593 - L3 LINE CR1 -641 936 884 204 355 99 0 chr1 224394579 224394700 -18269653 - MIR SINE MIR -56 152 20 379 233 12 0 chr1 224394716 224394802 -18269551 + MIR SINE MIR 12 98 -164 571 321 31 16 chr1 224394827 224395303 -18269050 - LTR33 LTR ERVL -3 518 1 376 182 36 64 chr1 224395305 224395415 -18268938 + MIR SINE MIR 117 223 -39 1903 145 3 11 chr1 224395830 224396113 -18268240 + AluSx SINE Alu 1 281 -31 183 42 0 0 chr1 224396113 224396137 -18268216 + (CA)n Simple_repeat Simple_repeat 1 24 0 227 267 204 23 chr1 224397593 224397769 -18266584 + L1ME4a LINE L1 5879 6086 -35 237 271 82 57 chr1 224398084 224398206 -18266147 + MLT1J LTR MaLR 43 167 -344 411 289 10 70 chr1 224398326 224398527 -18265826 + MLT1J LTR MaLR 323 511 0 446 298 67 11 chr1 224398537 224398715 -18265638 + MIR SINE MIR 47 234 -28 628 266 19 34 chr1 224399324 224399531 -18264822 + MIR SINE MIR 53 256 -6 2301 92 0 16 chr1 224400434 224400739 -18263614 - AluSx SINE Alu -12 300 1 212 0 36 0 chr1 224402343 224402371 -18261982 + (TG)n Simple_repeat Simple_repeat 2 30 0 1740 283 125 31 chr1 224402848 224404280 -18260073 + L2 LINE L2 1672 3237 -76 2107 143 119 10 chr1 224404366 224404752 -18259601 - MSTA LTR MaLR 0 428 1 199 231 0 77 chr1 224404786 224404851 -18259502 + L2 LINE L2 3254 3313 0 212 244 0 0 chr1 224404851 224404896 -18259457 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 201 114 23 23 chr1 224406781 224406825 -18257528 + (TG)n Simple_repeat Simple_repeat 1 44 0 1541 144 44 11 chr1 224406925 224407196 -18257157 + L1PA15 LINE L1 5882 6161 -4 225 390 43 0 chr1 224407270 224407411 -18256942 + MIR SINE MIR 21 167 -95 489 261 177 88 chr1 224407532 224408000 -18256353 + LTR67 LTR ERVL 46 555 -2 706 338 81 13 chr1 224408366 224408748 -18255605 + L3 LINE CR1 300 707 -870 320 281 11 0 chr1 224408936 224409025 -18255328 + MIR SINE MIR 173 262 0 200 317 30 30 chr1 224410424 224410525 -18253828 - MER5A DNA MER1_type -83 106 6 2697 139 14 16 chr1 224411614 224412047 -18252306 - Tigger2a DNA MER2_type -2 432 1 788 235 5 5 chr1 224412168 224412372 -18251981 - MIR SINE MIR -27 235 32 232 322 156 29 chr1 224412495 224412809 -18251544 + L2 LINE L2 2877 3230 -42 1609 156 64 7 chr1 224413278 224413560 -18250793 - AluJo SINE Alu -14 298 1 6358 125 188 90 chr1 224413644 224415189 -18249164 - pTR5 LTR ERV1 0 2438 742 261 191 0 0 chr1 224416824 224416871 -18247482 + MIR SINE MIR 98 144 -64 3645 154 25 35 chr1 224417005 224417401 -18246952 + L1MB3 LINE L1 5437 5824 -359 2309 115 0 3 chr1 224417401 224417714 -18246639 + AluSx SINE Alu 1 312 0 3645 154 25 35 chr1 224417714 224418037 -18246316 + L1MB3 LINE L1 5824 6149 -34 316 277 66 15 chr1 224418281 224418418 -18245935 + MIR SINE MIR 117 260 -2 425 243 19 0 chr1 224419565 224419668 -18244685 + MIR SINE MIR 47 151 -111 456 19 0 0 chr1 224419947 224420000 -18244353 + (CA)n Simple_repeat Simple_repeat 2 54 0 367 304 144 5 chr1 224420479 224420680 -18243673 + MIR SINE MIR 34 262 0 393 69 375 0 chr1 224421625 224421697 -18242656 - L1PA7 LINE L1 0 6154 6056 1611 174 36 14 chr1 224421706 224421987 -18242366 - AluJo SINE Alu -21 291 5 504 251 78 11 chr1 224422044 224422235 -18242118 - L1ME LINE L1 -299 5822 5619 1782 213 82 47 chr1 224422660 224423173 -18241180 - MER21B LTR ERV1 -40 823 293 1383 167 4 45 chr1 224423197 224423443 -18240910 + MER46A DNA MER2_type 1 236 0 2309 132 0 0 chr1 224423451 224423761 -18240592 - AluSx SINE Alu -2 310 1 468 288 62 35 chr1 224424181 224424469 -18239884 - MER34B LTR ERV1 0 565 270 963 233 36 70 chr1 224424634 224425046 -18239307 - LTR37B LTR ERV1 -70 398 1 237 307 100 27 chr1 224425328 224425478 -18238875 - MIR3 SINE MIR -37 171 11 185 132 26 0 chr1 224425567 224425605 -18238748 + GA-rich Low_complexity Low_complexity 3 41 0 * 408 183 0 0 chr1 224425604 224425697 -18238656 + (TGGA)n Simple_repeat Simple_repeat 2 94 0 213 121 0 0 chr1 224425724 224425757 -18238596 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 291 278 41 0 chr1 224426069 224426166 -18238187 - L1MA9 LINE L1 -93 6219 6119 185 301 179 16 chr1 224426250 224426373 -18237980 + MER5B DNA MER1_type 1 143 -35 256 315 43 0 chr1 224427472 224427564 -18236789 + MIR SINE MIR 76 171 -91 547 211 16 31 chr1 224428215 224428343 -18236010 + FLAM_C SINE Alu 1 126 -7 709 216 125 56 chr1 224428371 224428676 -18235677 - L1ME1 LINE L1 -46 6120 5795 241 333 55 12 chr1 224429097 224429262 -18235091 - L2 LINE L2 -562 2752 2581 792 144 0 8 chr1 224430317 224430442 -18233911 + FLAM_C SINE Alu 2 125 -8 1388 186 51 11 chr1 224430477 224430752 -18233601 + AluJo SINE Alu 22 307 -5 504 268 65 12 chr1 224432054 224432222 -18232131 - MIR3 SINE MIR -15 193 17 2095 143 0 0 chr1 224433070 224433377 -18230976 + AluSx SINE Alu 1 307 -5 262 25 0 0 chr1 224433795 224433835 -18230518 - L1PA2 LINE L1 -1 6154 6115 553 257 113 45 chr1 224433890 224434201 -18230152 + L2 LINE L2 2947 3278 -35 244 290 14 0 chr1 224434233 224434302 -18230051 + L1MEd LINE L1 133 202 -6003 1014 287 83 55 chr1 224434524 224434586 -18229767 + L1MEd LINE L1 477 536 -5669 201 39 0 0 chr1 224434586 224434612 -18229741 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 1014 287 83 55 chr1 224434612 224435392 -18228961 + L1MEd LINE L1 536 1343 -4862 1724 233 50 26 chr1 224435608 224436029 -18228324 - MER70B LTR ERVL -146 432 2 316 311 82 0 chr1 224436064 224436186 -18228167 + HAL1 LINE L1 1439 1570 -937 338 295 145 10 chr1 224436325 224436532 -18227821 - MLT1J2 LTR MaLR -139 311 77 228 292 0 0 chr1 224436588 224436660 -18227693 + L1MEd LINE L1 1621 1692 -4704 41 78 0 0 chr1 224437136 224437226 -18227127 + AT_rich Low_complexity Low_complexity 1 90 0 438 317 78 53 chr1 224437340 224437469 -18226884 - MIR SINE MIR -10 252 113 1610 176 0 4 chr1 224437469 224437741 -18226612 + AluJb SINE Alu 35 305 -7 438 317 78 53 chr1 224437741 224437854 -18226499 - MIR SINE MIR -149 113 4 623 256 90 104 chr1 224437867 224438027 -18226326 + L1MEd LINE L1 2330 2491 -3724 2095 118 3 3 chr1 224438027 224438314 -18226039 + AluSx SINE Alu 1 287 -25 623 256 90 104 chr1 224438314 224438728 -18225625 + L1MEd LINE L1 2491 2896 -3319 211 239 26 60 chr1 224438866 224438983 -18225370 - L2 LINE L2 -836 2478 2366 192 347 20 0 chr1 224439081 224439179 -18225174 - L2 LINE L2 -1442 1872 1773 2035 108 0 88 chr1 224439223 224439565 -18224788 - AluSx SINE Alu 0 312 1 4391 112 31 13 chr1 224439666 224440017 -18224336 - L1PB4 LINE L1 -13 6143 5800 360 43 0 0 chr1 224440017 224440063 -18224290 + (CA)n Simple_repeat Simple_repeat 2 47 0 4391 112 31 13 chr1 224440063 224440398 -18223955 - L1PB4 LINE L1 -356 5800 5445 495 171 23 120 chr1 224441308 224441524 -18222829 - L1ME4a LINE L1 -3 6118 5924 183 222 0 0 chr1 224442084 224442129 -18222224 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr1 224442146 224442168 -18222185 + AT_rich Low_complexity Low_complexity 1 22 0 3247 179 158 32 chr1 224442260 224442890 -18221463 - Tigger6a DNA MER2_type -527 1070 294 2389 111 0 6 chr1 224442890 224443205 -18221148 - AluSq SINE Alu 0 313 1 3247 179 158 32 chr1 224443205 224443466 -18220887 - Tigger6a DNA MER2_type -1303 294 67 249 170 208 0 chr1 224443509 224443562 -18220791 - Tigger6a DNA MER2_type -1019 64 1 2226 144 26 60 chr1 224443784 224444201 -18220152 - MER57A LTR ERV1 0 403 1 2098 106 11 3 chr1 224445606 224445918 -18218435 + AluSq SINE Alu 1 314 0 1840 145 26 19 chr1 224445971 224446281 -18218072 - AluJb SINE Alu 0 312 1 196 288 76 98 chr1 224446430 224446614 -18217739 - MER5A DNA MER1_type -2 187 8 375 280 0 30 chr1 224446939 224447039 -18217314 + MER81 DNA DNA 1 97 -17 1464 220 57 53 chr1 224447215 224447669 -18216684 - MER101 LTR ERV1 0 474 19 303 312 88 0 chr1 224448208 224448333 -18216020 - MER70-int LTR ERVL -355 4668 4533 2021 137 14 0 chr1 224449628 224449921 -18214432 + AluSx SINE Alu 1 297 -15 270 81 0 0 chr1 224449960 224449997 -18214356 + (A)n Simple_repeat Simple_repeat 1 37 0 286 342 59 40 chr1 224450223 224450527 -18213826 - HERV3 LTR ERV1 -2088 2559 2250 1033 93 33 0 chr1 224450775 224450925 -18213428 + AluSg/x SINE Alu 158 312 0 1992 73 8 0 chr1 224451334 224451595 -18212758 + L1PA8 LINE L1 5910 6172 0 320 283 41 50 chr1 224451807 224452017 -18212336 - HERV3 LTR ERV1 -2402 4127 3801 275 202 71 61 chr1 224452443 224452542 -18211811 - HERV3 LTR ERV1 -4480 3946 3847 656 294 53 76 chr1 224452930 224453379 -18210974 - HERV3 LTR ERV1 -4062 585 147 288 144 63 45 chr1 224455185 224455296 -18209057 + (TTTAA)n Simple_repeat Simple_repeat 3 115 0 842 220 26 48 chr1 224455923 224456150 -18208203 - MER101 LTR ERV1 0 474 253 603 261 0 0 chr1 224456171 224456286 -18208067 + FLAM_A SINE Alu 1 115 -18 806 172 19 19 chr1 224456392 224456549 -18207804 - MER101 LTR ERV1 -307 167 11 1664 240 105 85 chr1 224456642 224457385 -18206968 - MER21B LTR ERV1 -105 758 1 341 299 84 13 chr1 224457948 224458102 -18206251 + L1ME4a LINE L1 5956 6120 -1 227 233 0 0 chr1 224458646 224458689 -18205664 - L2 LINE L2 -9 3263 3221 321 274 91 48 chr1 224459086 224459144 -18205209 - L3 LINE CR1 -305 1272 1218 840 189 18 53 chr1 224459144 224459371 -18204982 + MER20 DNA MER1_type 1 219 0 321 274 91 48 chr1 224459371 224459498 -18204855 - L3 LINE CR1 -359 1218 1079 499 233 30 102 chr1 224459522 224459788 -18204565 + MIR SINE MIR 8 254 -8 224 222 0 0 chr1 224460321 224460366 -18203987 - L2 LINE L2 0 3313 3269 2774 138 14 9 chr1 224460542 224460985 -18203368 - MER65A LTR ERV1 0 445 1 1029 207 90 84 chr1 224461253 224461667 -18202686 - MER41B LTR ERV1 -10 599 200 890 194 32 74 chr1 224461717 224461933 -18202420 + MER21B LTR ERV1 19 225 -638 1333 205 150 51 chr1 224462114 224462545 -18201808 - LTR48 LTR ERV1 0 644 192 752 78 0 26 chr1 224462545 224462660 -18201693 + L1PA13 LINE L1 6052 6163 0 1333 205 150 51 chr1 224462660 224462871 -18201482 - LTR48 LTR ERV1 -452 192 3 1466 160 13 0 chr1 224462911 224463148 -18201205 - MER49 LTR ERV1 0 923 684 1402 95 133 21 chr1 224463147 224463388 -18200965 - MER4B LTR ERV1 -342 268 1 * 586 98 0 12 chr1 224463388 224463464 -18200889 + MER49 LTR ERV1 614 688 -235 258 253 165 0 chr1 224463459 224463538 -18200815 + MER21B LTR ERV1 721 812 -51 * 241 311 38 23 chr1 224464415 224464547 -18199806 - MIR SINE MIR -78 184 51 1610 126 20 0 chr1 224464547 224464793 -18199560 + LTR24C LTR ERV1 1 251 -384 1256 158 31 46 chr1 224464814 224465074 -18199279 + LTR24C LTR ERV1 380 635 0 944 87 0 0 chr1 224466556 224466671 -18197682 + AluSq/x SINE Alu 1 115 -198 31 0 0 0 chr1 224467198 224467229 -18197124 + AT_rich Low_complexity Low_complexity 1 31 0 624 186 0 0 chr1 224467230 224467343 -18197010 - L1MA6 LINE L1 0 6300 6188 427 188 198 0 chr1 224467540 224467690 -18196663 - FLAM_A SINE Alu 0 169 1 656 143 29 29 chr1 224467991 224468166 -18196187 + CT-rich Low_complexity Low_complexity 2 176 0 291 175 0 0 chr1 224468196 224468253 -18196100 + C-rich Low_complexity Low_complexity 3 59 0 1833 159 20 3 chr1 224468244 224468606 -18195747 - AluJo SINE Alu 0 372 6 1635 234 139 80 chr1 224468614 224469588 -18194765 - HAL1 LINE L1 -38 2469 1413 703 209 8 22 chr1 224469588 224469722 -18194631 + FLAM_A SINE Alu 2 133 0 1635 234 139 80 chr1 224469722 224469928 -18194425 - HAL1 LINE L1 -1094 1413 1220 1484 176 18 29 chr1 224469928 224470207 -18194146 + LTR8 LTR ERV1 416 691 0 1447 138 28 0 chr1 224470211 224470429 -18193924 - MER101B LTR ERV1 -346 224 1 1557 114 15 52 chr1 224470429 224470700 -18193653 + L1MB7 LINE L1 5721 5981 -197 1810 193 141 62 chr1 224470700 224471355 -18192998 + LTR48 LTR ERV1 3 644 0 911 153 20 61 chr1 224471385 224471526 -18192827 + L1MB7 LINE L1 5997 6129 -55 1611 204 18 0 chr1 224471526 224471811 -18192542 + AluJb SINE Alu 1 290 -22 911 153 20 61 chr1 224471811 224471865 -18192488 + L1MB7 LINE L1 6129 6184 0 38 85 0 0 chr1 224471952 224472046 -18192307 + AT_rich Low_complexity Low_complexity 1 94 0 248 0 31 0 chr1 224472709 224472741 -18191612 + (TG)n Simple_repeat Simple_repeat 1 33 0 280 212 118 50 chr1 224472749 224472982 -18191371 - L1ME4a LINE L1 -187 5934 5673 192 107 107 54 chr1 224473189 224473245 -18191108 - MIR3 SINE MIR -38 170 112 492 209 139 39 chr1 224473407 224473462 -18190891 + MER69 DNA AcHobo 1 49 -2477 1854 231 56 88 chr1 224473462 224474181 -18190172 + MER72 LTR ERV1 1 697 -25 2042 120 0 0 chr1 224474181 224474472 -18189881 - AluSx SINE Alu -21 291 1 1854 231 56 88 chr1 224474472 224474498 -18189855 + MER72 LTR ERV1 697 722 0 492 209 139 39 chr1 224474498 224474571 -18189782 + MER69 DNA AcHobo 49 142 -2384 297 123 53 0 chr1 224474574 224474631 -18189722 + MER69 DNA AcHobo 2450 2509 -17 3667 140 44 51 chr1 224474947 224475677 -18188676 + LTR8A LTR ERV1 3 727 0 267 182 136 15 chr1 224476829 224476895 -18187458 - MIR SINE MIR -122 140 67 2383 133 13 33 chr1 224477160 224477558 -18186795 - MLT1B LTR MaLR 0 390 1 355 62 0 31 chr1 224478031 224478096 -18186257 + (TTTTTG)n Simple_repeat Simple_repeat 2 64 0 791 73 0 9 chr1 224478224 224478334 -18186019 - L1PB1 LINE L1 -4 6147 6039 1854 186 22 3 chr1 224478370 224478717 -18185636 + MLT1A1 LTR MaLR 1 447 -10 2352 151 62 0 chr1 224479341 224479744 -18184609 - MSTA LTR MaLR 0 428 1 264 157 57 57 chr1 224480034 224480104 -18184249 + L1ME4a LINE L1 5850 5919 -202 2321 136 68 17 chr1 224481367 224481780 -18182573 - L1PA16 LINE L1 -1 6165 5732 1949 95 37 0 chr1 224482137 224482438 -18181915 - AluSx SINE Alu 0 311 1 969 142 7 0 chr1 224483573 224483728 -18180625 - FRAM SINE Alu -5 171 16 1961 136 10 3 chr1 224484404 224484705 -18179648 + AluSx SINE Alu 1 303 -9 240 94 0 0 chr1 224484705 224484737 -18179616 + (GGAAA)n Simple_repeat Simple_repeat 1 32 0 574 24 0 37 chr1 224484737 224484819 -18179534 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 785 226 42 56 chr1 224484819 224485106 -18179247 - HAL1b LINE L1 -376 972 690 1644 178 11 0 chr1 224485236 224485523 -18178830 - AluJb SINE Alu -22 290 1 1948 112 0 4 chr1 224486154 224486431 -18177922 + AluSx SINE Alu 1 276 -36 459 0 0 0 chr1 224486433 224486484 -18177869 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5027 42 0 2 chr1 224488407 224488999 -18175354 - LTR10C LTR ERV1 0 591 1 6700 84 2 2 chr1 224489417 224490783 -18173570 - L1PA11 LINE L1 -2 6172 4803 980 174 0 0 chr1 224490793 224490948 -18173405 - FRAM SINE Alu -11 155 1 746 193 8 8 chr1 224491088 224491609 -18172744 + (CA)n Simple_repeat Simple_repeat 1 521 0 2843 109 99 0 chr1 224491852 224492294 -18172059 + LTR19A LTR ERV1 1 486 0 339 299 81 58 chr1 224493565 224494086 -18170267 + L2 LINE L2 1812 2344 -970 2449 184 2 18 chr1 224494611 224495046 -18169307 + MSTC LTR MaLR 1 428 0 965 174 25 72 chr1 224496061 224496296 -18168057 - AluJo SINE Alu -12 300 77 621 202 0 0 chr1 224496500 224496609 -18167744 - FLAM_A SINE Alu -33 109 1 2063 161 31 43 chr1 224496609 224497025 -18167328 + MLT2D LTR ERVL 1 411 -3 312 281 72 33 chr1 224498173 224498326 -18166027 + MIR3 SINE MIR 35 193 -15 807 212 36 0 chr1 224498626 224498791 -18165562 - FAM SINE Alu -3 172 2 1858 132 138 15 chr1 224499108 224499433 -18164920 - MLT1A1 LTR MaLR 0 365 1 584 271 90 82 chr1 224499566 224499954 -18164399 + MLT1J LTR MaLR 119 509 -2 771 129 24 24 chr1 224500846 224500970 -18163383 - FLAM_A SINE Alu -9 124 1 2216 184 49 5 chr1 224501842 224502250 -18162103 - MSTB LTR MaLR 0 426 1 529 256 79 113 chr1 224502799 224503279 -18161074 - MLT1J LTR MaLR -45 466 3 309 267 11 44 chr1 224503292 224503382 -18160971 + MIR3 SINE MIR 94 180 -28 399 255 10 10 chr1 224504473 224504575 -18159778 - MER103 DNA DNA -45 121 20 2435 69 0 0 chr1 224504613 224504918 -18159435 - AluY SINE Alu -6 305 1 5201 107 18 31 chr1 224504921 224505761 -18158592 - L1PB4 LINE L1 -2 6154 5326 953 116 0 0 chr1 224506927 224507056 -18157297 + AluJo SINE Alu 5 133 -169 341 337 43 14 chr1 224507078 224507228 -18157125 + MIR SINE MIR 20 175 -61 202 214 0 0 chr1 224508549 224508591 -18155762 + (CA)n Simple_repeat Simple_repeat 1 42 0 890 152 0 32 chr1 224508644 224508802 -18155551 + AluJo SINE Alu 139 291 -21 1844 157 0 3 chr1 224508811 224509110 -18155243 + AluJb SINE Alu 1 298 -14 2285 147 11 0 chr1 224509119 224509480 -18154873 + L1PA16 LINE L1 5782 6146 -20 31 44 0 0 chr1 224509480 224509525 -18154828 + AT_rich Low_complexity Low_complexity 1 45 0 488 302 87 101 chr1 224509590 224509824 -18154529 + L2 LINE L2 2202 2438 -834 2254 110 0 0 chr1 224509824 224510134 -18154219 - AluSx SINE Alu -2 310 1 488 302 87 101 chr1 224510134 224510953 -18153400 + L2 LINE L2 2438 3245 -27 1529 61 0 52 chr1 224511145 224511358 -18152995 + L1PA8 LINE L1 5971 6172 0 294 287 69 0 chr1 224511627 224511714 -18152639 - MIR SINE MIR -111 151 59 202 327 141 6 chr1 224512119 224512275 -18152078 + MIR SINE MIR 84 260 -2 5085 191 62 14 chr1 224513141 224515085 -18149268 + L1MB3 LINE L1 4136 6183 0 3325 218 68 23 chr1 224515105 224516246 -18148107 + L1P4 LINE L1 4421 5616 -547 393 176 14 0 chr1 224516255 224516329 -18148024 - MLT1I LTR MaLR 0 409 335 443 255 98 2 chr1 224516392 224516537 -18147816 - MLT1I LTR MaLR -184 225 69 1919 120 20 7 chr1 224517116 224517416 -18146937 - AluJb SINE Alu -4 308 5 1487 180 9 102 chr1 224517676 224518009 -18146344 + AluJo SINE Alu 1 302 0 274 242 76 0 chr1 224518763 224518829 -18145524 + MIR3 SINE MIR 97 167 -41 674 208 127 0 chr1 224519351 224519524 -18144829 + MLT1J LTR MaLR 15 209 -302 514 273 35 17 chr1 224519577 224519749 -18144604 + MLT1J LTR MaLR 326 500 -11 588 213 43 7 chr1 224519980 224520121 -18144232 + MLT2F LTR ERVL 1 146 -517 234 0 0 0 chr1 224520125 224520151 -18144202 + (CA)n Simple_repeat Simple_repeat 1 26 0 273 98 0 0 chr1 224520151 224520192 -18144161 + (CAT)n Simple_repeat Simple_repeat 1 41 0 388 241 0 0 chr1 224520195 224520274 -18144079 + MLT2F LTR ERVL 213 291 -372 372 197 0 0 chr1 224520302 224520363 -18143990 + MER45 DNA AcHobo 1521 1581 0 1002 295 13 36 chr1 224521437 224521824 -18142529 + MLT1J LTR MaLR 134 511 0 511 180 41 57 chr1 224521843 224521965 -18142388 + MLT1J2 LTR MaLR 16 135 -315 525 270 108 22 chr1 224521991 224522176 -18142177 + MLT1J2 LTR MaLR 191 391 -59 508 267 28 40 chr1 224522193 224522369 -18141984 + MLT1J2 LTR MaLR 272 445 -5 572 293 29 29 chr1 224522880 224523085 -18141268 + MIR SINE MIR 3 207 -55 280 278 1 155 chr1 224523351 224523402 -18140951 - L2 LINE L2 0 3313 3256 1772 153 80 6 chr1 224523402 224523741 -18140612 + MLT1A1 LTR MaLR 2 365 0 280 278 1 155 chr1 224523741 224523837 -18140516 - L2 LINE L2 -57 3256 3146 222 91 0 0 chr1 224524855 224524888 -18139465 + (TG)n Simple_repeat Simple_repeat 1 33 0 650 230 5 11 chr1 224528147 224528338 -18136015 - L1MA4 LINE L1 -1 6299 6110 408 204 61 0 chr1 224528374 224528472 -18135881 - L1MA4 LINE L1 -180 6120 6017 197 381 8 17 chr1 224528633 224528751 -18135602 + MIR3 SINE MIR 5 121 -87 247 184 0 0 chr1 224528865 224528903 -18135450 - U6 snRNA snRNA -69 38 1 258 81 0 0 chr1 224528909 224528946 -18135407 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 431 275 14 42 chr1 224529339 224529481 -18134872 - LTR67 LTR ERVL -411 146 9 23 78 0 0 chr1 224529601 224529652 -18134701 + AT_rich Low_complexity Low_complexity 1 51 0 6187 128 42 24 chr1 224529652 224529885 -18134468 - L1MA8 LINE L1 -10 6281 6054 2410 98 0 0 chr1 224529885 224530192 -18134161 - AluSc SINE Alu -2 307 1 6187 128 42 24 chr1 224530192 224530625 -18133728 - L1MA8 LINE L1 -237 6054 5630 2049 109 29 0 chr1 224530625 224530933 -18133420 - AluSq SINE Alu 0 316 1 6187 128 42 24 chr1 224530933 224531563 -18132790 - L1MA8 LINE L1 -661 5630 4949 18261 195 28 16 chr1 224531609 224532166 -18132187 + L1PA15 LINE L1 1183 1732 -5084 2391 78 3 0 chr1 224532166 224532460 -18131893 - AluY SINE Alu -14 297 3 18261 195 28 16 chr1 224532460 224537433 -18126920 + L1PA15 LINE L1 1732 6811 -5 232 277 45 36 chr1 224537625 224537737 -18126616 - L1MC/D LINE L1 -1877 5931 5819 617 213 34 53 chr1 224537755 224537962 -18126391 - L1MC5 LINE L1 -50 7911 7709 935 174 45 0 chr1 224537981 224538136 -18126217 - MER58A DNA MER1_type 0 162 1 2599 222 86 104 chr1 224538136 224539772 -18124581 - L1MC5 LINE L1 -243 7718 6113 818 274 60 29 chr1 224539906 224540187 -18124166 - L1MC/D LINE L1 -2109 5699 5410 1239 191 62 27 chr1 224540515 224540771 -18123582 + AluJo SINE Alu 38 302 -10 337 307 0 30 chr1 224540799 224540900 -18123453 + MER5A DNA MER1_type 91 188 -1 182 256 44 33 chr1 224540911 224541001 -18123352 + MIR SINE MIR 132 222 -40 2149 100 0 10 chr1 224541397 224541688 -18122665 + THE1B LTR MaLR 1 288 -76 1722 211 9 6 chr1 224542187 224542588 -18121765 - L1M4 LINE L1 -3539 3105 2704 556 198 0 42 chr1 224542592 224542688 -18121665 - AluJ SINE Alu -18 294 203 976 142 57 0 chr1 224542692 224542833 -18121520 - AluJ SINE Alu -163 149 1 6720 231 47 45 chr1 224542840 224542912 -18121441 - L1M4 LINE L1 -3939 2707 2637 1556 147 4 13 chr1 224542912 224543150 -18121203 + MER46A DNA MER2_type 1 236 0 6720 231 47 45 chr1 224543150 224543416 -18120937 - L1M4 LINE L1 -4009 2637 2373 8102 25 0 2 chr1 224543416 224544904 -18119449 + L1PA4 LINE L1 4689 6176 0 6720 231 47 45 chr1 224544904 224545889 -18118464 - L1M4 LINE L1 -4273 2373 1391 2075 123 3 3 chr1 224545889 224546208 -18118145 - AluSx SINE Alu 0 319 1 6720 231 47 45 chr1 224546208 224547542 -18116811 - L1M4 LINE L1 -5255 1391 30 456 35 0 0 chr1 224549546 224549604 -18114749 + (CA)n Simple_repeat Simple_repeat 2 59 0 765 246 118 30 chr1 224549736 224550066 -18114287 - LTR16A LTR ERVL -9 441 83 1067 137 6 0 chr1 224550707 224550868 -18113485 + AluSg/x SINE Alu 144 305 -5 1318 159 122 33 chr1 224550876 224551146 -18113207 + AluJo SINE Alu 1 294 -18 914 98 0 0 chr1 224552319 224552441 -18111912 - AluSp/q SINE Alu -4 309 188 272 281 0 0 chr1 224552548 224552612 -18111741 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 213 314 22 58 chr1 224552719 224552856 -18111497 + MIR SINE MIR 56 187 -75 447 329 71 6 chr1 224553969 224554139 -18110214 - MIR SINE MIR -72 190 10 785 195 69 0 chr1 224554270 224554429 -18109924 + MER5A DNA MER1_type 1 170 -19 271 270 135 36 chr1 224554489 224554600 -18109753 - L2 LINE L2 0 3313 3192 2157 129 28 147 chr1 224554812 224554992 -18109361 - L1MB3 LINE L1 0 6183 5983 2037 124 7 0 chr1 224554992 224555275 -18109078 + AluSx SINE Alu 9 293 -19 2157 129 28 147 chr1 224555275 224555659 -18108694 - L1MB3 LINE L1 -200 5983 5686 * 3949 239 23 15 chr1 224555653 224556472 -18107881 - L1MB3 LINE L1 -818 5328 4498 1870 173 81 0 chr1 224556472 224556807 -18107546 - MLT1A1 LTR MaLR 0 365 4 3949 239 23 15 chr1 224556807 224557027 -18107326 - L1MB3 LINE L1 -1648 4498 4281 495 306 52 0 chr1 224557143 224557336 -18107017 - REP3 LTR ERV -359 203 1 704 228 235 17 chr1 224557512 224557810 -18106543 - MLT1J LTR MaLR -118 393 31 297 75 0 0 chr1 224559171 224559211 -18105142 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 188 264 123 53 chr1 224559344 224559571 -18104782 + L2 LINE L2 640 882 -2432 374 250 134 47 chr1 224559732 224559936 -18104417 - L1MC5 LINE L1 -401 7560 7375 1066 174 88 66 chr1 224559936 224559965 -18104388 - MER33 DNA MER1_type -2261 324 297 1544 154 88 28 chr1 224559965 224560250 -18104103 + AluJo SINE Alu 1 302 -10 1066 174 88 66 chr1 224560250 224560387 -18103966 - MER33 DNA MER1_type -2288 297 165 2194 114 0 3 chr1 224560387 224560686 -18103667 + AluSx SINE Alu 1 298 -14 1066 174 88 66 chr1 224560686 224560835 -18103518 - MER33 DNA MER1_type -2420 165 1 374 250 134 47 chr1 224560835 224560906 -18103447 - L1MC5 LINE L1 -586 7375 7261 382 295 97 19 chr1 224561033 224561231 -18103122 + L1MC4 LINE L1 7699 7933 -109 306 0 0 0 chr1 224561231 224561265 -18103088 + (TG)n Simple_repeat Simple_repeat 2 35 0 382 295 97 19 chr1 224561265 224561385 -18102968 + L1MC4 LINE L1 7933 8042 0 22 0 0 0 chr1 224561394 224561416 -18102937 + AT_rich Low_complexity Low_complexity 1 22 0 514 317 29 41 chr1 224561417 224561660 -18102693 - MIR SINE MIR -21 241 2 277 287 46 37 chr1 224562045 224562153 -18102200 - MIR SINE MIR -1 261 153 353 265 12 0 chr1 224562470 224562553 -18101800 - MIR SINE MIR -109 153 70 2437 133 30 25 chr1 224563056 224563418 -18100935 + THE1B LTR MaLR 1 364 0 485 348 97 0 chr1 224563471 224563626 -18100727 - MER91A DNA MER1_type -26 170 1 552 287 42 58 chr1 224565567 224565828 -18098525 - L2 LINE L2 0 3313 3057 2179 125 0 7 chr1 224565846 224566151 -18098202 + AluSx SINE Alu 1 303 -9 1511 156 28 0 chr1 224567714 224567964 -18096389 + AluJo SINE Alu 1 257 -55 1978 133 6 19 chr1 224568620 224568936 -18095417 + AluJo SINE Alu 1 312 0 187 148 0 0 chr1 224569364 224569391 -18094962 + L2 LINE L2 3010 3036 -277 231 194 60 60 chr1 224569447 224569514 -18094839 + L2 LINE L2 3161 3227 -86 606 285 134 28 chr1 224570940 224571469 -18092884 + L1ME4a LINE L1 5535 6119 -2 21 0 0 0 chr1 224572481 224572502 -18091851 + AT_rich Low_complexity Low_complexity 1 21 0 466 218 16 40 chr1 224573290 224573414 -18090939 + L1MB3 LINE L1 6051 6171 -12 554 209 0 18 chr1 224573951 224574061 -18090292 - MIR SINE MIR -142 120 13 269 220 0 0 chr1 224574321 224574371 -18089982 + Tigger5 DNA MER2_type 1 50 -2273 * 302 263 0 13 chr1 224574358 224574434 -18089919 + Tigger5 DNA MER2_type 2249 2323 0 271 89 0 44 chr1 224574434 224574479 -18089874 + Tigger5 DNA MER2_type 13 55 -2268 233 143 0 24 chr1 224574447 224574489 -18089864 + Tigger5 DNA MER2_type 2251 2291 -32 * 444 198 12 0 chr1 224574488 224574574 -18089779 + Tigger5 DNA MER2_type 2237 2323 0 2209 119 3 0 chr1 224575911 224576205 -18088148 + AluSq SINE Alu 1 295 -18 1440 184 4 0 chr1 224576693 224576937 -18087416 + AluJo SINE Alu 41 285 -27 216 0 0 0 chr1 224577484 224577508 -18086845 + (A)n Simple_repeat Simple_repeat 1 24 0 675 260 62 41 chr1 224577914 224578156 -18086197 + L1ME1 LINE L1 5915 6161 -5 305 292 62 14 chr1 224578677 224578821 -18085532 - MER117 DNA MER1_type -40 157 7 2372 106 0 0 chr1 224579234 224579545 -18084808 - AluSx SINE Alu -1 311 1 191 323 48 0 chr1 224579776 224579838 -18084515 + L2 LINE L2 3145 3209 -63 23 0 0 0 chr1 224579967 224579990 -18084363 + AT_rich Low_complexity Low_complexity 1 23 0 2127 131 0 0 chr1 224580714 224581011 -18083342 + AluSx SINE Alu 1 297 -15 876 225 30 0 chr1 224581078 224581278 -18083075 - MER3 DNA MER1_type -3 206 1 525 211 191 77 chr1 224581487 224581681 -18082672 + MIR SINE MIR 7 222 -40 1712 170 44 38 chr1 224582305 224582646 -18081707 + MER7A DNA MER2_type 1 341 -5 315 270 60 0 chr1 224582759 224582859 -18081494 + MIR SINE MIR 79 184 -78 1910 123 40 31 chr1 224583095 224583421 -18080932 - MER46B DNA MER2_type -1 235 32 768 283 0 0 chr1 224584980 224585153 -18079200 + FAM SINE Alu 1 173 -2 2213 104 3 3 chr1 224586144 224586441 -18077912 - AluSx SINE Alu -15 297 1 193 292 22 22 chr1 224586930 224587019 -18077334 + L2 LINE L2 2966 3054 -218 2297 129 30 99 chr1 224588202 224588668 -18075685 + Tigger2a DNA MER2_type 1 434 0 221 263 179 0 chr1 224589019 224589114 -18075239 + MIR SINE MIR 34 145 -63 1522 179 53 3 chr1 224589418 224589703 -18074650 - AluJb SINE Alu -13 299 1 2282 116 0 0 chr1 224590132 224590435 -18073918 + AluSx SINE Alu 1 303 -9 197 250 60 12 chr1 224591696 224591780 -18072573 - L2 LINE L2 -25 3247 3160 2349 92 0 7 chr1 224591810 224592113 -18072240 + AluY SINE Alu 1 301 -10 1735 144 70 11 chr1 224592128 224592413 -18071940 - AluJb SINE Alu -10 302 1 2462 64 0 3 chr1 224592786 224593082 -18071271 - AluY SINE Alu -16 295 1 838 239 61 0 chr1 224596854 224597084 -18067269 + REP3 LTR ERV 317 560 -2 2702 39 0 3 chr1 224597100 224597412 -18066941 + AluY SINE Alu 1 311 0 307 248 32 80 chr1 224597457 224597582 -18066771 + MLT1I LTR MaLR 283 401 -8 265 247 14 14 chr1 224597636 224597709 -18066644 + MLT1J LTR MaLR 409 481 -30 605 175 0 7 chr1 224597973 224598116 -18066237 + (TCCA)n Simple_repeat Simple_repeat 1 142 0 182 250 0 67 chr1 224598116 224598176 -18066177 - L2 LINE L2 -78 3235 3180 538 217 42 0 chr1 224598518 224598638 -18065715 - L2 LINE L2 0 3313 3189 2122 112 17 14 chr1 224598780 224599076 -18065277 - AluSg SINE Alu -13 297 1 1767 152 59 3 chr1 224600131 224600421 -18063932 - AluJb SINE Alu -6 306 1 330 98 0 0 chr1 224600563 224600614 -18063739 + (CA)n Simple_repeat Simple_repeat 2 52 0 2203 87 3 21 chr1 224601062 224601349 -18063004 - AluSx SINE Alu -30 282 1 689 162 7 0 chr1 224601503 224601657 -18062696 + CT-rich Low_complexity Low_complexity 4 158 0 2094 128 7 3 chr1 224601674 224601964 -18062389 - AluSx SINE Alu -19 293 3 267 333 40 0 chr1 224601966 224602092 -18062261 + MIR SINE MIR 106 236 -26 474 188 0 10 chr1 224602450 224602546 -18061807 + L1M3 LINE L1 5466 5560 -620 7361 215 32 83 chr1 224602941 224604898 -18059455 - L1M3 LINE L1 -603 6075 4020 2333 101 0 7 chr1 224604898 224605205 -18059148 - AluSc SINE Alu -3 306 2 7361 215 32 83 chr1 224605205 224606107 -18058246 - L1M3 LINE L1 -2658 4020 3378 2351 85 0 3 chr1 224606107 224606400 -18057953 + AluY SINE Alu 1 292 -19 7361 215 32 83 chr1 224606400 224606516 -18057837 - L1M3 LINE L1 -3300 3378 3258 3501 197 34 89 chr1 224606508 224606700 -18057653 - L1M3 LINE L1 -4649 1997 1796 * 1949 149 36 0 chr1 224606700 224607001 -18057352 - AluSx SINE Alu 0 312 1 3501 197 34 89 chr1 224607001 224607132 -18057221 - L1M3 LINE L1 -4850 1796 1659 2254 110 17 0 chr1 224607132 224607431 -18056922 - AluSc SINE Alu -5 304 1 3501 197 34 89 chr1 224607431 224607922 -18056431 - L1M3 LINE L1 -4987 1659 1143 901 215 6 0 chr1 224607922 224608085 -18056268 - FRAM SINE Alu -2 164 1 3501 197 34 89 chr1 224608085 224608740 -18055613 - L1M3 LINE L1 -5503 1143 611 2040 144 10 0 chr1 224609263 224609555 -18054798 - AluSx SINE Alu -17 295 1 2108 101 21 10 chr1 224610017 224610305 -18054048 + AluSc SINE Alu 1 291 -18 2212 107 0 0 chr1 224610911 224611219 -18053134 + AluSx SINE Alu 1 308 0 2149 75 18 22 chr1 224612639 224612949 -18051404 - AluSx SINE Alu 0 317 9 623 168 0 0 chr1 224613018 224613113 -18051240 + AluSg/x SINE Alu 198 292 -18 423 276 44 64 chr1 224613290 224613614 -18050739 - LTR24C LTR ERV1 0 635 245 360 226 19 75 chr1 224613684 224613790 -18050563 - LTR24B LTR ERV1 -365 100 1 180 278 188 49 chr1 224613978 224614194 -18050159 - L2 LINE L2 -5 3267 3006 1715 191 3 3 chr1 224614194 224614493 -18049860 - AluJo SINE Alu -13 299 1 180 278 188 49 chr1 224614493 224614542 -18049811 - L2 LINE L2 -266 3006 2965 2361 106 0 0 chr1 224614840 224615143 -18049210 - AluSx SINE Alu -9 303 1 181 258 16 32 chr1 224616141 224616203 -18048150 + MIR SINE MIR 29 89 -119 237 363 63 16 chr1 224617463 224617653 -18046700 + MIR SINE MIR 52 250 -12 2541 170 46 27 chr1 224618652 224619200 -18045153 + MER74A LTR ERVL 1 558 0 4298 163 99 18 chr1 224619228 224619248 -18045105 - MER21B LTR ERV1 -1 862 845 3550 51 2 15 chr1 224619248 224619702 -18044651 + LTR7 LTR ERV1 1 448 -2 4298 163 99 18 chr1 224619702 224620478 -18043875 - MER21B LTR ERV1 -18 845 1 461 267 17 57 chr1 224620617 224620793 -18043560 - L2 LINE L2 -33 3280 3112 234 279 144 0 chr1 224620870 224620974 -18043379 - MIR SINE MIR -92 170 52 1103 161 0 0 chr1 224621071 224621232 -18043121 + AluJb SINE Alu 137 297 -15 2038 124 31 0 chr1 224621234 224621524 -18042829 + AluSg SINE Alu 1 299 -11 1081 111 96 20 chr1 224621524 224621723 -18042630 - Tigger2 DNA MER2_type -232 2486 2273 412 186 0 14 chr1 224621713 224621783 -18042570 - Tigger2 DNA MER2_type -2649 69 1 * 409 171 0 0 chr1 224621902 224621972 -18042381 + MIR SINE MIR 49 118 -144 346 237 203 0 chr1 224623549 224623667 -18040686 + L1MCc LINE L1 30 171 -6252 571 238 138 42 chr1 224623778 224623967 -18040386 + MLT1E2 LTR MaLR 103 309 -317 909 290 76 6 chr1 224623977 224624332 -18040021 + L1MCc LINE L1 3037 3416 -3525 245 215 231 0 chr1 224624335 224624400 -18039953 + MLT1F LTR MaLR 1 80 -462 25 83 0 0 chr1 224624418 224624478 -18039875 + AT_rich Low_complexity Low_complexity 1 60 0 792 174 0 0 chr1 224624489 224624610 -18039743 - FLAM_A SINE Alu -10 123 3 345 230 15 82 chr1 224624644 224624754 -18039599 - L1MEd LINE L1 -5081 1038 937 1841 133 29 52 chr1 224624754 224625062 -18039291 + AluSx SINE Alu 1 301 -11 345 230 15 82 chr1 224625062 224625086 -18039267 - L1MEd LINE L1 -5182 937 913 634 304 76 46 chr1 224625099 224625349 -18039004 - L1MEd LINE L1 -5260 859 618 2389 102 0 0 chr1 224625349 224625654 -18038699 - AluSq SINE Alu -8 305 1 634 304 76 46 chr1 224625654 224625929 -18038424 - L1MEd LINE L1 -5501 618 318 451 140 139 12 chr1 224625988 224626090 -18038263 - L1MC3 LINE L1 -7 7801 7664 466 75 0 0 chr1 224626115 224626182 -18038171 - AluSp/q SINE Alu -3 310 244 1461 84 0 0 chr1 224626182 224626361 -18037992 - AluSx SINE Alu -133 179 1 225 0 0 0 chr1 224626365 224626390 -18037963 + (TTCCC)n Simple_repeat Simple_repeat 3 27 0 1182 130 16 5 chr1 224626431 224626616 -18037737 - L1PB1 LINE L1 -36 6115 5929 247 292 106 16 chr1 224626753 224626935 -18037418 - L1MC4a LINE L1 0 7808 7644 213 77 0 51 chr1 224626996 224627035 -18037318 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 215 244 12 23 chr1 224627550 224627636 -18036717 + CT-rich Low_complexity Low_complexity 1 85 0 257 287 109 0 chr1 224628334 224628435 -18035918 - L1MC/D LINE L1 -2120 5688 5577 1684 249 43 35 chr1 224628464 224628588 -18035765 - L1ME1 LINE L1 -18 6148 6027 2339 105 0 3 chr1 224628588 224628892 -18035461 + AluSq SINE Alu 1 303 -10 1684 249 43 35 chr1 224628892 224628988 -18035365 - L1ME1 LINE L1 -139 6027 5933 5904 141 21 48 chr1 224628988 224630089 -18034264 + MER11C LTR ERVK 1 1071 0 1684 249 43 35 chr1 224630089 224630353 -18034000 - L1ME1 LINE L1 -233 5933 5659 388 81 30 162 chr1 224630372 224630471 -18033882 + L1MA4A LINE L1 6198 6283 -20 33 66 0 0 chr1 224630515 224630576 -18033777 + AT_rich Low_complexity Low_complexity 1 61 0 724 221 5 32 chr1 224630576 224630601 -18033752 - L1ME1 LINE L1 -531 5635 5611 324 0 0 0 chr1 224630601 224630637 -18033716 + (CA)n Simple_repeat Simple_repeat 1 36 0 724 221 5 32 chr1 224630637 224630804 -18033549 - L1ME1 LINE L1 -555 5611 5444 377 269 42 8 chr1 224630986 224631105 -18033248 + MER103 DNA DNA 44 166 0 305 316 125 12 chr1 224632489 224632657 -18031696 + MER5A DNA MER1_type 3 189 0 1769 298 61 40 chr1 224632932 224634018 -18030335 + L1MEc LINE L1 86 1193 -5203 1586 239 67 66 chr1 224634026 224634611 -18029742 + L1MEc LINE L1 1284 1867 -4529 7331 135 37 2 chr1 224634611 224635800 -18028553 - Tigger3b DNA MER2_type -1 1230 1 1586 239 67 66 chr1 224635800 224635904 -18028449 + L1MEc LINE L1 1867 1977 -4419 2337 93 3 0 chr1 224635904 224636204 -18028149 - AluSx SINE Alu -11 301 1 1586 239 67 66 chr1 224636204 224636241 -18028112 + L1MEc LINE L1 1977 2012 -4384 878 167 0 12 chr1 224636243 224636405 -18027948 - FAM SINE Alu -4 45 1 1903 222 40 15 chr1 224636413 224637094 -18027259 + L1MEc LINE L1 2036 2690 -3525 1290 173 117 69 chr1 224637406 224637869 -18026484 + MER66A LTR ERV1 97 478 0 300 320 48 20 chr1 224638811 224638958 -18025395 - L1ME LINE L1 -320 5801 5651 697 280 58 46 chr1 224639114 224639533 -18024820 - MLT1K LTR MaLR 0 588 149 2295 58 7 14 chr1 224639606 224639900 -18024453 - AluY SINE Alu 0 311 20 3660 141 34 42 chr1 224639952 224640591 -18023762 - MER51A LTR ERV1 0 634 1 354 281 47 39 chr1 224640639 224640767 -18023586 + L2 LINE L2 3136 3264 -8 341 315 0 9 chr1 224640767 224640875 -18023478 - L1ME LINE L1 -470 5651 5545 514 174 165 26 chr1 224641009 224641023 -18023330 - AluJo SINE Alu -178 134 123 207 0 0 0 chr1 224641023 224641046 -18023307 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 514 174 165 26 chr1 224641046 224641146 -18023207 - AluJo SINE Alu -189 123 4 1481 151 115 32 chr1 224641249 224641528 -18022825 - AluJo SINE Alu -10 302 1 804 171 0 8 chr1 224641531 224641660 -18022693 - AluJo/FLAM SINE Alu -180 132 5 1286 158 0 27 chr1 224641765 224641986 -18022367 - AluJo SINE Alu -8 304 90 2870 179 12 5 chr1 224642005 224642598 -18021755 - L1MB2 LINE L1 -7 6164 5477 2069 143 3 0 chr1 224642606 224642900 -18021453 - AluSx SINE Alu -17 295 1 1321 278 113 29 chr1 224642901 224643459 -18020894 - Tigger8 DNA MER2_type -54 612 8 6975 219 27 24 chr1 224644046 224644939 -18019414 + L1MB3 LINE L1 3611 4513 -1633 1761 173 81 0 chr1 224644939 224645274 -18019079 + MLT1A1 LTR MaLR 4 365 0 6975 219 27 24 chr1 224645274 224646093 -18018260 + L1MB3 LINE L1 4513 5328 -818 2125 129 28 147 chr1 224646087 224646471 -18017882 + L1MB3 LINE L1 5686 5983 -200 * 2054 124 7 0 chr1 224646471 224646754 -18017599 - AluSx SINE Alu -19 293 9 2125 129 28 147 chr1 224646754 224646934 -18017419 + L1MB3 LINE L1 5983 6183 0 241 270 135 36 chr1 224647146 224647257 -18017096 + L2 LINE L2 3192 3313 0 1383 167 4 45 chr1 224647351 224647597 -18016756 - MER46A DNA MER2_type 0 236 1 1782 213 82 47 chr1 224647621 224648134 -18016219 + MER21B LTR ERV1 293 823 -40 504 251 78 11 chr1 224648559 224648750 -18015603 + L1ME LINE L1 5619 5822 -299 1611 174 36 14 chr1 224648807 224649088 -18015265 + AluJo SINE Alu 5 291 -21 393 69 375 0 chr1 224649097 224649169 -18015184 + L1PA7 LINE L1 6056 6154 0 367 304 144 5 chr1 224650114 224650315 -18014038 - MIR SINE MIR 0 262 34 438 20 0 0 chr1 224650794 224650845 -18013508 + (TG)n Simple_repeat Simple_repeat 2 52 0 425 243 19 0 chr1 224651124 224651227 -18013126 - MIR SINE MIR -111 151 47 316 277 66 15 chr1 224652374 224652511 -18011842 - MIR SINE MIR -2 260 117 3645 154 25 35 chr1 224652755 224653078 -18011275 - L1MB3 LINE L1 -34 6149 5824 2309 115 0 3 chr1 224653078 224653391 -18010962 - AluSx SINE Alu 0 312 1 3645 154 25 35 chr1 224653391 224653787 -18010566 - L1MB3 LINE L1 -359 5824 5437 261 191 0 0 chr1 224653921 224653968 -18010385 - MIR SINE MIR -64 144 98 5187 138 58 35 chr1 224655603 224656597 -18007756 + pTR5 LTR ERV1 742 1866 -572 2405 87 0 0 chr1 224659116 224659414 -18004939 + AluSx SINE Alu 1 298 -14 2091 115 14 3 chr1 224659489 224659775 -18004578 + AluSx SINE Alu 1 289 -23 352 239 90 19 chr1 224660094 224660249 -18004104 - Charlie7 DNA MER1_type 0 2612 2447 357 192 77 0 chr1 224660514 224660592 -18003761 + MIR SINE MIR 37 120 -142 180 0 0 0 chr1 224660790 224660810 -18003543 + (A)n Simple_repeat Simple_repeat 1 20 0 13519 122 82 16 chr1 224661641 224662612 -18001741 + Tigger1 DNA MER2_type 1 907 -1511 2308 86 26 7 chr1 224662612 224662916 -18001437 - AluSq SINE Alu -3 310 1 13519 122 82 16 chr1 224662916 224664214 -18000139 + Tigger1 DNA MER2_type 907 2418 0 1662 159 25 7 chr1 224665199 224665352 -17999001 - AluJo SINE Alu -30 282 120 865 68 40 23 chr1 224665352 224665529 -17998824 + (TA)n Simple_repeat Simple_repeat 1 180 0 1662 159 25 7 chr1 224665529 224665652 -17998701 - AluJo SINE Alu -192 120 1 39 0 0 0 chr1 224667587 224667626 -17996727 + GC_rich Low_complexity Low_complexity 1 39 0 27 81 0 0 chr1 224667763 224667825 -17996528 + GC_rich Low_complexity Low_complexity 1 62 0 234 170 21 0 chr1 224668835 224668882 -17995471 + MIR SINE MIR 105 152 -110 471 121 157 0 chr1 224668901 224668984 -17995369 - FLAM SINE Alu -10 133 38 376 244 295 0 chr1 224669652 224669808 -17994545 + MIR SINE MIR 12 213 -49 191 242 45 30 chr1 224669946 224670012 -17994341 - L2 LINE L2 -219 3053 2987 216 0 0 0 chr1 224670216 224670240 -17994113 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2148 100 11 0 chr1 224670242 224670521 -17993832 - AluSq SINE Alu -30 283 2 1477 149 73 49 chr1 224670615 224670903 -17993450 + AluJo SINE Alu 1 295 -17 187 31 62 0 chr1 224670906 224670938 -17993415 + T-rich Low_complexity Low_complexity 2 35 0 191 189 19 0 chr1 224671391 224671444 -17992909 + (TA)n Simple_repeat Simple_repeat 2 55 0 414 0 0 0 chr1 224671448 224671494 -17992859 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 822 240 73 5 chr1 224672295 224672487 -17991866 - MER3 DNA MER1_type -4 205 1 243 0 0 0 chr1 224672528 224672555 -17991798 + (CA)n Simple_repeat Simple_repeat 2 28 0 645 207 16 0 chr1 224673154 224673275 -17991078 + FLAM_A SINE Alu 1 123 -10 210 37 0 0 chr1 224673460 224673487 -17990866 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 385 217 75 17 chr1 224676594 224676714 -17987639 - MER20B DNA MER1_type -19 764 638 23 42 0 21 chr1 224676975 224677006 -17987347 + AT_rich Low_complexity Low_complexity 1 32 -15 802 183 0 0 chr1 224677006 224677137 -17987216 + FLAM_C SINE Alu 1 131 -2 23 42 0 21 chr1 224677137 224677153 -17987200 + AT_rich Low_complexity Low_complexity 32 47 0 2138 138 3 0 chr1 224677201 224677505 -17986848 + AluSx SINE Alu 4 308 -4 195 162 0 0 chr1 224677882 224677919 -17986434 + T-rich Low_complexity Low_complexity 1 37 0 2466 72 0 0 chr1 224678125 224678447 -17985906 + AluY SINE Alu 1 322 0 1030 203 75 81 chr1 224679739 224680084 -17984269 + MER2 DNA MER2_type 2 344 0 1774 152 9 48 chr1 224680153 224680469 -17983884 - AluJb SINE Alu -1 311 8 219 299 45 0 chr1 224681353 224681420 -17982933 - L2 LINE L2 0 3272 3203 238 318 156 19 chr1 224681722 224681933 -17982420 - L2 LINE L2 -609 2705 2466 1339 246 223 34 chr1 224682254 224682994 -17981359 + HAL1 LINE L1 539 1418 -1089 305 300 83 0 chr1 224683039 224683159 -17981194 - HAL1 LINE L1 -2374 133 4 293 204 0 0 chr1 224683462 224683511 -17980842 + MER66B LTR ERV1 298 346 -140 184 309 44 0 chr1 224683671 224683739 -17980614 + L2 LINE L2 3199 3269 -44 291 224 209 52 chr1 224684327 224684461 -17979892 + L2 LINE L2 3158 3312 -1 1854 173 7 10 chr1 224684493 224684793 -17979560 - AluJb SINE Alu -13 299 1 186 283 57 75 chr1 224686698 224686804 -17977549 + MIR SINE MIR 9 112 -150 2009 152 26 68 chr1 224687564 224687991 -17976362 - MLT2D LTR ERVL -5 409 1 4420 148 41 27 chr1 224687991 224688254 -17976099 - ERVL-D LTR ERVL -7 5757 5499 1838 155 21 10 chr1 224688254 224688383 -17975970 + AluSx SINE Alu 1 127 -185 183 80 0 0 chr1 224688383 224688408 -17975945 + (CATATA)n Simple_repeat Simple_repeat 4 28 0 1838 155 21 10 chr1 224688408 224688568 -17975785 + AluSx SINE Alu 127 293 -19 4420 148 41 27 chr1 224688568 224689113 -17975240 - ERVL-D LTR ERVL -265 5499 4938 26 0 0 0 chr1 224689370 224689396 -17974957 + AT_rich Low_complexity Low_complexity 1 26 0 222 221 107 5 chr1 224690254 224690358 -17973995 + MIR SINE MIR 7 130 -78 287 292 95 7 chr1 224691678 224691815 -17972538 - L1ME LINE L1 -485 5636 5488 23 68 0 0 chr1 224693427 224693471 -17970882 + AT_rich Low_complexity Low_complexity 1 44 0 3081 146 34 0 chr1 224693697 224694224 -17970129 + L1MB7 LINE L1 5621 6165 -19 2389 101 0 0 chr1 224694516 224694822 -17969531 + AluSg SINE Alu 1 306 -4 962 185 71 24 chr1 224695132 224695386 -17968967 - MER33 DNA MER1_type -1 323 58 312 201 112 8 chr1 224695723 224695857 -17968496 + Charlie7 DNA MER1_type 2434 2581 -31 1642 158 16 26 chr1 224697214 224697517 -17966836 - AluJb SINE Alu -9 303 4 2426 75 3 0 chr1 224697548 224697841 -17966512 + AluSp SINE Alu 1 294 -19 237 83 0 0 chr1 224699737 224699773 -17964580 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2227 108 7 3 chr1 224700845 224701142 -17963211 + AluSx SINE Alu 1 298 -14 742 266 31 9 chr1 224701783 224702009 -17962344 - MIR SINE MIR -26 236 6 2300 79 13 13 chr1 224702188 224702493 -17961860 + AluSx SINE Alu 1 305 -7 1692 173 10 7 chr1 224702574 224702863 -17961490 + AluJb SINE Alu 1 290 -22 2188 123 3 3 chr1 224703254 224703555 -17960798 - AluSx SINE Alu -11 301 1 2274 112 0 10 chr1 224703651 224703947 -17960406 - AluSx SINE Alu -19 293 1 1613 193 13 10 chr1 224704033 224704338 -17960015 - AluJb SINE Alu -6 306 1 372 336 17 103 chr1 224704363 224704469 -17959884 - L2 LINE L2 -25 3247 3134 2109 130 0 0 chr1 224704469 224704790 -17959563 - AluSq SINE Alu 0 313 1 372 336 17 103 chr1 224704790 224704975 -17959378 - L2 LINE L2 -138 3134 2981 228 292 56 0 chr1 224705042 224705131 -17959222 - L2 LINE L2 -506 2808 2715 878 216 22 31 chr1 224705264 224705499 -17958854 + MLT1E LTR MaLR 223 523 -70 1845 146 7 37 chr1 224705504 224705798 -17958555 + AluJb SINE Alu 11 295 -17 561 86 0 29 chr1 224705798 224705903 -17958450 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 399 343 101 9 chr1 224705986 224706324 -17958029 - L2 LINE L2 -588 2726 2358 585 255 33 0 chr1 224706444 224706597 -17957756 - L2 LINE L2 -927 2387 2230 284 351 33 7 chr1 224707040 224707191 -17957162 - L2 LINE L2 -1081 2233 2079 1948 117 0 0 chr1 224707267 224707533 -17956820 - AluSq SINE Alu -6 307 42 1668 99 5 0 chr1 224707534 224707746 -17956607 - AluSp SINE Alu -100 213 1 668 203 95 6 chr1 224708109 224708267 -17956086 + MER3 DNA MER1_type 6 130 -79 2116 139 0 3 chr1 224708269 224708571 -17955782 + AluSx SINE Alu 1 301 -11 248 241 11 58 chr1 224708781 224708868 -17955485 + MER112 DNA MER1_type 9 91 -169 * 402 215 143 60 chr1 224708859 224708994 -17955359 - HsTC2b DNA Tc2 -989 909 787 839 181 0 0 chr1 224708994 224709127 -17955226 - FLAM_A SINE Alu 0 133 1 402 215 143 60 chr1 224709127 224709242 -17955111 - HsTC2b DNA Tc2 -1111 787 638 377 246 228 43 chr1 224709290 224709501 -17954852 - HsTC2b DNA Tc2 -623 292 43 2267 105 0 0 chr1 224709564 224709876 -17954477 + AluSx SINE Alu 1 312 0 238 284 54 14 chr1 224709908 224709982 -17954371 + MER112 DNA MER1_type 172 248 -12 1821 132 49 0 chr1 224710312 224710629 -17953724 + AluSx SINE Alu 4 333 0 241 245 92 0 chr1 224711006 224711104 -17953249 + MIR SINE MIR 85 191 -71 256 115 19 0 chr1 224711549 224711601 -17952752 + L1MB4 LINE L1 6128 6180 0 307 158 122 137 chr1 224711862 224711937 -17952416 + L1MB8 LINE L1 6037 6112 -66 180 0 0 0 chr1 224711937 224711957 -17952396 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2069 120 0 0 chr1 224711962 224712238 -17952115 - AluSp SINE Alu -37 276 1 307 158 122 137 chr1 224712238 224712295 -17952058 + L1MB8 LINE L1 6116 6173 -5 1605 155 44 57 chr1 224712813 224713110 -17951243 + AluJo SINE Alu 1 293 -19 2098 130 0 10 chr1 224713134 224713441 -17950912 + AluSq SINE Alu 1 304 -9 2101 118 23 13 chr1 224714745 224715236 -17949117 + AluSx SINE Alu 3 496 0 737 202 0 16 chr1 224715053 224715278 -17949075 + GA-rich Low_complexity Low_complexity 1 222 0 203 339 0 0 chr1 224715315 224715371 -17948982 - L2 LINE L2 -33 3239 3184 2277 89 16 7 chr1 224715674 224715978 -17948375 - AluSq SINE Alu -5 308 2 2497 84 3 0 chr1 224716568 224716877 -17947476 + AluSp SINE Alu 1 310 -3 292 274 153 0 chr1 224717098 224717222 -17947131 + MIR SINE MIR 8 150 -112 947 125 0 0 chr1 224717254 224717382 -17946971 + FLAM_C SINE Alu 2 129 -14 890 175 7 0 chr1 224717429 224717566 -17946787 + FRAM SINE Alu 4 141 -35 284 173 0 0 chr1 224717566 224717618 -17946735 + Alu SINE Alu 251 302 0 250 325 25 0 chr1 224717700 224717780 -17946573 + MIR3 SINE MIR 106 187 -21 658 224 158 25 chr1 224717865 224718061 -17946292 + AluSg/x SINE Alu 87 308 -4 2669 99 23 8 chr1 224718167 224718551 -17945802 - MLT1B LTR MaLR 0 390 1 2098 318 82 52 chr1 224718617 224720045 -17944308 + ERVL LTR ERVL 2751 4221 -1543 2481 86 0 0 chr1 224720126 224720439 -17943914 + AluSq SINE Alu 1 313 0 1155 156 184 39 chr1 224720559 224720815 -17943538 - AluJo SINE Alu -9 293 1 846 136 0 0 chr1 224720932 224721050 -17943303 + FLAM_C SINE Alu 8 125 -18 1904 148 28 62 chr1 224721053 224721326 -17943027 - MER7A DNA MER2_type -2693 345 87 2330 92 10 0 chr1 224721326 224721621 -17942732 + AluSx SINE Alu 1 298 -14 1904 148 28 62 chr1 224721621 224721705 -17942648 - MER7A DNA MER2_type -2951 87 2 229 224 37 62 chr1 224721713 224721874 -17942479 - L1 LINE L1 -2878 3268 3112 202 217 17 17 chr1 224722990 224723050 -17941303 + (CGG)n Simple_repeat Simple_repeat 1 60 0 37 62 0 0 chr1 224723158 224723223 -17941130 + AT_rich Low_complexity Low_complexity 1 65 0 1869 99 0 82 chr1 224723226 224723518 -17940835 + AluSx SINE Alu 1 268 -44 2174 25 0 0 chr1 224723527 224723805 -17940548 + AluY SINE Alu 43 320 0 818 127 0 8 chr1 224723815 224723933 -17940420 - FLAM_C SINE Alu -26 117 1 1016 99 0 0 chr1 224724024 224724165 -17940188 - Tigger4(Zombi) DNA MER2_type 0 2731 2591 767 103 22 141 chr1 224724165 224724333 -17940020 - Tigger4(Zombi) DNA MER2_type -274 2457 2311 2163 110 3 41 chr1 224724333 224724478 -17939875 + AluSx SINE Alu 1 150 -162 1990 130 0 53 chr1 224724478 224724801 -17939552 + AluSx SINE Alu 1 306 -6 2163 110 3 41 chr1 224724801 224724974 -17939379 + AluSx SINE Alu 150 307 -5 767 103 22 141 chr1 224724974 224724990 -17939363 - Tigger4(Zombi) DNA MER2_type -420 2311 2295 513 141 0 54 chr1 224724987 224725041 -17939312 - Tigger4(Zombi) DNA MER2_type -2644 87 38 * 1879 120 0 86 chr1 224725041 224725411 -17938942 - AluSx SINE Alu 0 312 1 513 141 0 54 chr1 224725411 224725448 -17938905 - Tigger4(Zombi) DNA MER2_type -2693 38 1 433 280 140 44 chr1 224725448 224725877 -17938476 - L1 LINE L1 -3193 2953 2484 1910 137 0 25 chr1 224725987 224726271 -17938082 + AluJb SINE Alu 3 279 -33 29 60 0 0 chr1 224726613 224726663 -17937690 + AT_rich Low_complexity Low_complexity 1 50 0 781 296 43 11 chr1 224726877 224727154 -17937199 - L1MC4a LINE L1 -1894 5914 5629 2056 123 13 17 chr1 224727159 224727461 -17936892 - AluSq SINE Alu -12 301 1 3145 162 17 4 chr1 224727463 224727999 -17936354 + L1MC1 LINE L1 5451 5993 -340 676 148 0 0 chr1 224727999 224728100 -17936253 + AluJ/FLAM SINE Alu 2 102 -210 349 250 23 0 chr1 224728133 224728221 -17936132 + L1MC4 LINE L1 6614 6703 -1339 225 154 0 0 chr1 224728221 224728260 -17936093 + (TA)n Simple_repeat Simple_repeat 2 40 0 459 158 12 0 chr1 224728270 224728352 -17936001 + L1MC1 LINE L1 5992 6074 -259 1428 102 61 4 chr1 224728354 224728599 -17935754 + L1MA7 LINE L1 6031 6289 -2 1811 165 115 44 chr1 224729016 224729088 -17935265 - MLT1C LTR MaLR 0 467 402 1945 88 14 81 chr1 224729088 224729420 -17934933 + AluSx SINE Alu 11 322 0 1811 165 115 44 chr1 224729420 224729782 -17934571 - MLT1C LTR MaLR -65 402 1 234 188 0 0 chr1 224730594 224730642 -17933711 + T-rich Low_complexity Low_complexity 1 48 0 2158 88 60 0 chr1 224730687 224730971 -17933382 + AluSq SINE Alu 1 301 -12 214 104 21 21 chr1 224731038 224731086 -17933267 + (TA)n Simple_repeat Simple_repeat 2 49 0 2254 99 0 0 chr1 224731194 224731486 -17932867 - AluSx SINE Alu 0 312 21 1864 165 0 20 chr1 224731486 224731789 -17932564 - AluJb SINE Alu -15 297 1 252 206 11 54 chr1 224732426 224732518 -17931835 + MER96B DNA MER1_type? 27 114 -303 1938 133 6 38 chr1 224732593 224732909 -17931444 - AluSx SINE Alu -6 306 1 2454 78 0 7 chr1 224732920 224733229 -17931124 - AluSg SINE Alu -3 307 1 437 156 31 47 chr1 224733466 224733594 -17930759 + MER96B DNA MER1_type? 253 378 -39 1871 89 4 0 chr1 224733857 224734094 -17930259 + AluSx SINE Alu 1 238 -74 207 100 0 0 chr1 224734098 224734128 -17930225 + (A)n Simple_repeat Simple_repeat 1 30 0 23 33 0 0 chr1 224735258 224735288 -17929065 + GC_rich Low_complexity Low_complexity 1 30 0 236 316 111 26 chr1 224736088 224736205 -17928148 - L2 LINE L2 -1 3271 3145 356 256 83 16 chr1 224736569 224736690 -17927663 + L2 LINE L2 3144 3272 0 576 237 23 8 chr1 224736987 224737118 -17927235 - FLAM_A SINE Alu 0 133 1 2298 88 14 3 chr1 224737125 224737421 -17926932 - AluSp SINE Alu -14 299 1 864 129 109 15 chr1 224738841 224739042 -17925311 + Charlie5 DNA MER1_type 2397 2616 0 572 225 73 14 chr1 224739546 224739747 -17924606 - MIR SINE MIR -1 261 48 40 37 0 0 chr1 224739830 224739884 -17924469 + AT_rich Low_complexity Low_complexity 1 54 0 2292 80 28 0 chr1 224740522 224740808 -17923545 + AluSp SINE Alu 1 294 -19 215 313 48 0 chr1 224741062 224741145 -17923208 + MIR SINE MIR 63 149 -113 438 282 163 11 chr1 224742446 224742723 -17921630 - L2 LINE L2 -1 3312 2994 739 160 0 53 chr1 224742854 224742985 -17921368 + FLAM_C SINE Alu 2 125 -18 2168 125 0 34 chr1 224743041 224743361 -17920992 - AluSx SINE Alu -3 309 1 2050 154 3 0 chr1 224743383 224743688 -17920665 - AluJb SINE Alu -6 306 1 788 142 8 0 chr1 224743907 224744027 -17920326 - 5S rRNA rRNA 0 121 1 2515 84 0 0 chr1 224744971 224745280 -17919073 + AluSg SINE Alu 1 309 -1 1910 168 0 13 chr1 224745628 224745943 -17918410 + AluJo SINE Alu 1 311 -1 1960 151 13 35 chr1 224746924 224747024 -17917329 - Charlie5 DNA MER1_type 0 2624 2523 1966 122 6 53 chr1 224747024 224747343 -17917010 - AluJo SINE Alu -8 304 1 1960 151 13 35 chr1 224747343 224747460 -17916893 - Charlie5 DNA MER1_type -101 2523 2405 2622 129 18 36 chr1 224747460 224747743 -17916610 - Tigger2a DNA MER2_type -2275 433 159 2308 90 0 7 chr1 224747743 224748042 -17916311 - AluSg SINE Alu -13 297 1 2622 129 18 36 chr1 224748042 224748199 -17916154 - Tigger2a DNA MER2_type -2549 159 1 1960 151 13 35 chr1 224748199 224748378 -17915975 - Charlie5 DNA MER1_type -219 2405 2236 450 195 177 0 chr1 224748379 224748492 -17915861 - MER3 DNA MER1_type -83 126 41 1295 238 75 36 chr1 224748822 224749285 -17915068 - MLT1B LTR MaLR -7 460 3 2065 148 0 10 chr1 224749490 224749800 -17914553 - AluJb SINE Alu -5 307 1 182 284 0 23 chr1 224750135 224750223 -17914130 + L2 LINE L2 2888 2973 -340 180 111 0 0 chr1 224750388 224750415 -17913938 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 216 317 69 10 chr1 224750602 224750703 -17913650 - L3 LINE CR1 -147 1430 1324 2455 74 3 0 chr1 224750781 224751079 -17913274 - AluSq SINE Alu -10 303 5 208 269 92 25 chr1 224751105 224751224 -17913129 - L3 LINE CR1 -420 1157 1031 240 59 0 0 chr1 224751449 224751483 -17912870 + (CA)n Simple_repeat Simple_repeat 2 35 0 1552 186 6 43 chr1 224751952 224752274 -17912079 - AluJb SINE Alu -2 310 1 2299 121 0 0 chr1 224752405 224752711 -17911642 + AluSq SINE Alu 1 306 -7 324 240 149 32 chr1 224752730 224752884 -17911469 - L1ME4a LINE L1 -12 6109 5938 27 0 0 0 chr1 224753409 224753436 -17910917 + AT_rich Low_complexity Low_complexity 1 27 0 421 256 119 12 chr1 224753541 224753709 -17910644 + MER5A DNA MER1_type 1 186 -3 307 56 0 0 chr1 224756039 224756075 -17908278 - tRNA-Gly-GGC tRNA tRNA -38 36 1 2015 130 0 11 chr1 224756108 224756427 -17907926 - AluSx SINE Alu 0 316 1 25 31 0 0 chr1 224756511 224756543 -17907810 + AT_rich Low_complexity Low_complexity 1 32 0 1941 176 8 43 chr1 224756642 224756963 -17907390 - L1MB5 LINE L1 -32 6142 5836 1813 154 55 3 chr1 224756963 224757256 -17907097 - AluJb SINE Alu -2 310 3 1941 176 8 43 chr1 224757256 224757327 -17907026 - L1MB5 LINE L1 -338 5836 5764 1982 144 3 19 chr1 224757401 224757713 -17906640 - AluJo SINE Alu -5 307 1 5902 158 45 35 chr1 224757773 224757906 -17906447 - L1MC1 LINE L1 -18 6315 6185 2305 112 0 0 chr1 224757906 224758202 -17906151 + AluSx SINE Alu 1 296 -16 5902 158 45 35 chr1 224758202 224758742 -17905611 - L1MC1 LINE L1 -148 6185 5652 882 115 6 89 chr1 224758742 224758863 -17905490 + U4 snRNA snRNA 1 108 -37 2276 107 0 25 chr1 224758863 224759039 -17905314 - AluSx SINE Alu -1 311 145 2348 85 0 13 chr1 224759039 224759346 -17905007 - AluSx SINE Alu -9 303 1 2276 107 0 25 chr1 224759346 224759488 -17904865 - AluSx SINE Alu -167 145 1 882 115 6 89 chr1 224759488 224759523 -17904830 + U4 snRNA snRNA 108 144 -1 5902 158 45 35 chr1 224759523 224760326 -17904027 - L1MC1 LINE L1 -681 5652 4823 1832 114 73 4 chr1 224760508 224760781 -17903572 + AluSq SINE Alu 1 292 -21 880 158 8 0 chr1 224760825 224760958 -17903395 + AluJo SINE Alu 1 134 -178 1651 166 13 32 chr1 224761020 224761333 -17903020 - AluJo SINE Alu -5 307 1 464 95 14 0 chr1 224761349 224761423 -17902930 - MER2 DNA MER2_type -160 185 111 23 0 0 0 chr1 224761501 224761524 -17902829 + AT_rich Low_complexity Low_complexity 1 23 0 2197 119 7 0 chr1 224761681 224761984 -17902369 + AluSx SINE Alu 1 305 -7 381 276 105 66 chr1 224763138 224763366 -17900987 + MIR SINE MIR 7 243 -19 2608 55 7 0 chr1 224764235 224764543 -17899810 - AluY SINE Alu -1 310 1 2637 48 0 16 chr1 224764606 224764922 -17899431 - AluY SINE Alu 0 311 1 719 169 0 44 chr1 224765104 224765240 -17899113 + FLAM_C SINE Alu 1 130 -3 777 163 0 22 chr1 224765468 224765603 -17898750 + FLAM_C SINE Alu 2 133 0 287 303 150 38 chr1 224765957 224766324 -17898029 - LTR67 LTR ERVL -1 556 149 2221 77 26 42 chr1 224768060 224768373 -17895980 - AluY SINE Alu -3 308 1 234 0 0 0 chr1 224768561 224768587 -17895766 + (CAA)n Simple_repeat Simple_repeat 2 27 0 749 224 37 61 chr1 224768723 224768777 -17895576 - MER58C DNA MER1_type -2205 215 161 2319 101 0 3 chr1 224768777 224769073 -17895280 + AluSx SINE Alu 1 295 -17 749 224 37 61 chr1 224769073 224769232 -17895121 - MER58C DNA MER1_type -2259 161 7 249 312 126 35 chr1 224769309 224769469 -17894884 + L3 LINE CR1 1266 1449 -128 1850 157 0 20 chr1 224769469 224769775 -17894578 + AluJb SINE Alu 1 300 -12 249 312 126 35 chr1 224769775 224769813 -17894540 + L3 LINE CR1 1449 1482 -95 25 0 0 0 chr1 224769930 224769955 -17894398 + AT_rich Low_complexity Low_complexity 1 25 0 1069 132 12 6 chr1 224770916 224771083 -17893270 + FRAM SINE Alu 1 165 -11 561 223 41 136 chr1 224771286 224771420 -17892933 + MIR SINE MIR 43 188 -74 1666 166 10 24 chr1 224771420 224771709 -17892644 + AluJo SINE Alu 1 285 -27 561 223 41 136 chr1 224771709 224771773 -17892580 + MIR SINE MIR 188 217 -45 2065 136 27 0 chr1 224771773 224772068 -17892285 + AluJb SINE Alu 1 303 -9 561 223 41 136 chr1 224772068 224772110 -17892243 + MIR SINE MIR 217 261 -1 209 227 0 0 chr1 224772417 224772461 -17891892 + T-rich Low_complexity Low_complexity 1 44 0 211 348 93 17 chr1 224772517 224772635 -17891718 - L2 LINE L2 -8 3264 3138 1721 246 60 20 chr1 224772857 224773360 -17890993 - L1MB7 LINE L1 -5 6179 5657 1985 116 4 4 chr1 224773434 224773709 -17890644 - AluSx SINE Alu -2 310 36 1632 154 16 49 chr1 224773783 224774088 -17890265 - AluJo SINE Alu -17 295 1 284 68 0 23 chr1 224774096 224774140 -17890213 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2133 102 3 7 chr1 224774142 224774426 -17889927 - AluSx SINE Alu -29 283 1 1607 154 71 47 chr1 224774635 224774999 -17889354 - L1MB8 LINE L1 0 6178 5806 199 263 84 21 chr1 224777815 224777910 -17886443 - MIR SINE MIR -56 206 106 2281 97 3 0 chr1 224778153 224778451 -17885902 - AluSx SINE Alu -13 299 1 1066 116 27 0 chr1 224778508 224778654 -17885699 + AluSg/x SINE Alu 135 284 -26 314 186 0 17 chr1 224778790 224778849 -17885504 - L2 LINE L2 -4 3268 3211 941 195 143 0 chr1 224778884 224779105 -17885248 + MER58B DNA MER1_type 36 288 -53 25 31 0 0 chr1 224779549 224779581 -17884772 + AT_rich Low_complexity Low_complexity 1 32 0 1317 182 99 69 chr1 224779595 224780060 -17884293 - MER39 LTR ERV1 0 707 8 940 203 63 17 chr1 224780085 224780322 -17884031 - L1MA9 LINE L1 -38 6274 6027 379 238 300 25 chr1 224780495 224780735 -17883618 - L1MB8 LINE L1 -322 5799 5494 1980 88 37 40 chr1 224780748 224780910 -17883443 - AluSg SINE Alu -15 295 133 2391 95 0 0 chr1 224780910 224781216 -17883137 - AluSg SINE Alu -4 306 1 1980 88 37 40 chr1 224781216 224781349 -17883004 - AluSg SINE Alu -177 133 1 2217 112 0 0 chr1 224781356 224781643 -17882710 - AluSx SINE Alu -25 287 1 6590 31 0 3 chr1 224781746 224782470 -17881883 - L1PA5 LINE L1 -13 6141 5418 1923 131 0 7 chr1 224782470 224782745 -17881608 - AluSx SINE Alu -39 273 1 633 179 0 0 chr1 224782859 224782954 -17881399 + FLAM_A SINE Alu 22 116 -26 727 178 0 31 chr1 224782985 224783114 -17881239 - FLAM_C SINE Alu -17 126 2 860 188 31 47 chr1 224783115 224783307 -17881046 + AluJo SINE Alu 102 290 -22 680 316 111 18 chr1 224783334 224783714 -17880639 + L2 LINE L2 2897 3311 -2 223 324 118 64 chr1 224784192 224784522 -17879831 - L2 LINE L2 0 3272 2925 273 363 98 13 chr1 224784806 224785183 -17879170 - L2 LINE L2 -685 2629 2221 302 230 130 20 chr1 224786135 224786235 -17878118 + MIR SINE MIR 70 180 -82 294 19 0 96 chr1 224787092 224787144 -17877209 - AluJo SINE Alu -1 301 255 969 141 25 25 chr1 224787144 224787307 -17877046 - AluJo SINE Alu -149 163 1 181 378 82 22 chr1 224787489 224787624 -17876729 - MIR3 SINE MIR -49 159 17 2376 95 0 3 chr1 224788024 224788328 -17876025 - AluSx SINE Alu -9 303 1 252 0 0 0 chr1 224788340 224788368 -17875985 + (T)n Simple_repeat Simple_repeat 1 28 0 2706 164 81 19 chr1 224788460 224788780 -17875573 - MER44D DNA MER2_type -1882 605 306 1486 94 49 22 chr1 224788780 224789004 -17875349 + MER30 DNA MER1_type 1 230 0 2706 164 81 19 chr1 224789004 224789201 -17875152 - MER44D DNA MER2_type -2181 306 1 252 183 268 0 chr1 224789580 224789662 -17874691 - MER112 DNA MER1_type 0 260 157 216 200 0 0 chr1 224789927 224789972 -17874381 + (TA)n Simple_repeat Simple_repeat 2 46 0 2283 86 0 38 chr1 224790632 224790947 -17873406 - AluSg SINE Alu -7 303 1 1224 210 97 19 chr1 224790973 224791240 -17873113 - AluJo SINE Alu -14 288 1 2253 88 0 7 chr1 224791344 224791640 -17872713 - AluSc SINE Alu 0 309 16 1770 207 63 88 chr1 224793229 224793997 -17870356 + L1ME LINE L1 4705 5448 -718 818 163 0 30 chr1 224794308 224794443 -17869910 - FLAM_C SINE Alu -8 135 5 1795 190 0 3 chr1 224794733 224795043 -17869310 + AluJo SINE Alu 1 309 -3 1606 116 171 4 chr1 224795155 224795413 -17868940 - AluSg1 SINE Alu -8 301 1 423 283 146 35 chr1 224796215 224796441 -17867912 - MIR SINE MIR -6 256 6 841 174 0 35 chr1 224797088 224797232 -17867121 - FLAM_C SINE Alu -3 140 2 1963 142 7 3 chr1 224797438 224797741 -17866612 - AluSx SINE Alu -8 304 1 285 301 54 21 chr1 224798254 224798347 -17866006 - L2 LINE L2 -21 3251 3156 1832 171 0 7 chr1 224798534 224798826 -17865527 - AluJo SINE Alu -22 290 1 2197 124 3 0 chr1 224799775 224800082 -17864271 - AluSg SINE Alu -2 308 1 1637 186 10 16 chr1 224800453 224800765 -17863588 + AluJo SINE Alu 1 310 -2 283 220 17 0 chr1 224800886 224800945 -17863408 + FLAM_A SINE Alu 47 106 -27 2274 67 11 3 chr1 224801013 224801296 -17863057 - L1PB2 LINE L1 -2 6149 5865 2389 87 0 0 chr1 224801526 224801825 -17862528 + AluSp SINE Alu 1 299 -14 1060 197 4 48 chr1 224802050 224802145 -17862208 - AluJo SINE Alu -92 220 122 1956 151 3 0 chr1 224802145 224802436 -17861917 - AluSx SINE Alu -20 292 1 1060 197 4 48 chr1 224802436 224802568 -17861785 - AluJo SINE Alu -190 122 3 937 266 14 5 chr1 224802637 224802859 -17861494 - MER58A DNA MER1_type 0 224 1 2169 206 50 71 chr1 224802896 224802960 -17861393 - L1ME1 LINE L1 -5 6161 6097 1995 127 41 0 chr1 224802960 224803252 -17861101 - AluSx SINE Alu -8 304 1 2169 206 50 71 chr1 224803252 224803808 -17860545 - L1ME1 LINE L1 -69 6097 5554 1960 139 7 17 chr1 224804049 224804344 -17860009 - AluSx SINE Alu -20 292 1 1019 213 11 6 chr1 224804612 224804786 -17859567 + FAM SINE Alu 1 175 0 791 201 94 0 chr1 224805069 224805228 -17859125 - FAM SINE Alu -1 174 1 2388 98 0 13 chr1 224805787 224806102 -17858251 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr1 224807009 224807029 -17857324 + (T)n Simple_repeat Simple_repeat 1 20 0 846 181 0 0 chr1 224807589 224807727 -17856626 - FRAM SINE Alu -8 168 31 1921 149 6 19 chr1 224807736 224808052 -17856301 - AluJo SINE Alu 0 312 1 560 316 63 15 chr1 224808056 224808325 -17856028 - HAL1 LINE L1 0 2507 2226 330 259 44 30 chr1 224808350 224808485 -17855868 - HAL1 LINE L1 -359 2148 2012 1526 92 117 0 chr1 224809452 224809658 -17854695 - MER30 DNA MER1_type 0 230 1 2053 98 81 3 chr1 224810211 224810496 -17853857 - AluSx SINE Alu -5 307 1 1717 162 17 24 chr1 224810532 224810828 -17853525 + AluJb SINE Alu 1 294 -18 509 259 176 36 chr1 224810842 224811201 -17853152 - MLT1H LTR MaLR -2 547 139 189 219 12 98 chr1 224811423 224811505 -17852848 + MIR SINE MIR 60 134 -128 1445 233 136 5 chr1 224811960 224812217 -17852136 - MLT1C LTR MaLR -3 464 242 1966 132 31 3 chr1 224812217 224812504 -17851849 - AluSg SINE Alu -15 295 1 1445 233 136 5 chr1 224812504 224812650 -17851703 - MLT1C LTR MaLR -225 242 8 1735 130 4 30 chr1 224812937 224813199 -17851154 + AluSx SINE Alu 1 255 -57 597 225 0 0 chr1 224813200 224813320 -17851033 - MER20 DNA MER1_type -69 150 31 513 336 106 32 chr1 224813563 224814128 -17850225 + L2 LINE L2 1226 1832 -1482 286 331 63 7 chr1 224814225 224814367 -17849986 + L2 LINE L2 2316 2465 -849 1337 161 199 14 chr1 224814370 224814553 -17849800 - MER44D DNA MER2_type -1882 609 461 1196 202 0 74 chr1 224814553 224814811 -17849542 - MER8 DNA MER2_type 0 239 1 1337 161 199 14 chr1 224814811 224814841 -17849512 - MER44D DNA MER2_type -2030 461 438 182 61 0 30 chr1 224814841 224814874 -17849479 + (TCTCTG)n Simple_repeat Simple_repeat 6 37 0 1337 161 199 14 chr1 224814874 224814945 -17849408 - MER44D DNA MER2_type -2053 438 1 180 344 167 41 chr1 224814998 224815268 -17849085 + L2 LINE L2 2612 2915 -399 181 308 0 0 chr1 224815611 224815663 -17848690 + L2 LINE L2 3262 3313 0 26 0 0 0 chr1 224815681 224815707 -17848646 + AT_rich Low_complexity Low_complexity 1 26 0 1341 103 19 22 chr1 224815776 224816096 -17848257 - L1MA3 LINE L1 0 6305 5794 27 29 0 0 chr1 224816430 224816464 -17847889 + AT_rich Low_complexity Low_complexity 1 34 0 2399 74 0 3 chr1 224816474 224816773 -17847580 - AluY SINE Alu -13 298 1 2162 138 0 13 chr1 224816978 224817289 -17847064 - AluSx SINE Alu -5 307 1 2411 88 0 3 chr1 224817796 224818103 -17846250 - AluSc SINE Alu -3 306 1 1538 187 22 7 chr1 224818793 224819110 -17845243 - AluJo SINE Alu 0 321 1 761 187 159 16 chr1 224819193 224819375 -17844978 + MER3 DNA MER1_type 2 209 0 363 136 0 0 chr1 224819593 224819652 -17844701 - MLT1H LTR MaLR 0 549 491 483 270 67 79 chr1 224819793 224819991 -17844362 - MLT1H LTR MaLR -242 307 111 1710 172 3 7 chr1 224819991 224820287 -17844066 - AluJb SINE Alu -15 297 3 483 270 67 79 chr1 224820287 224820355 -17843998 - MLT1H LTR MaLR -438 111 44 1852 162 13 0 chr1 224820659 224820961 -17843392 - AluJb SINE Alu -6 306 1 219 69 0 0 chr1 224821200 224821229 -17843124 + (TA)n Simple_repeat Simple_repeat 2 30 0 1472 148 164 12 chr1 224821233 224821489 -17842864 - AluJb SINE Alu -7 295 1 2595 50 0 0 chr1 224821592 224821893 -17842460 - AluY SINE Alu -10 301 1 244 245 0 0 chr1 224822072 224822125 -17842228 + L1MC4a LINE L1 5880 5932 -1876 1336 165 57 61 chr1 224822514 224822811 -17841542 + AluJo SINE Alu 1 296 -16 1335 113 97 0 chr1 224823657 224823852 -17840501 - AluSq SINE Alu -95 218 5 1383 123 15 5 chr1 224823913 224824116 -17840237 - AluSc SINE Alu -37 272 68 703 264 188 9 chr1 224824131 224824460 -17839893 + LTR33 LTR ERVL 86 473 -48 187 226 0 186 chr1 224824557 224824659 -17839694 - L2 LINE L2 -56 3216 3134 22 70 0 0 chr1 224825165 224825208 -17839145 + AT_rich Low_complexity Low_complexity 1 43 0 334 161 16 0 chr1 224825987 224826049 -17838304 - AluSc SINE Alu 0 301 239 1524 123 31 0 chr1 224826151 224826378 -17837975 - AluSc SINE Alu -75 234 1 854 167 37 19 chr1 224827679 224827841 -17836512 - FRAM SINE Alu -9 167 3 1584 174 65 7 chr1 224828113 224828407 -17835946 - AluJo SINE Alu -1 311 1 2043 119 3 0 chr1 224829875 224830169 -17834184 - AluSx SINE Alu -17 295 1 1251 150 0 73 chr1 224830658 224830918 -17833435 - AluJo SINE Alu -63 249 9 1327 193 60 21 chr1 224831183 224831468 -17832885 + AluJb SINE Alu 2 297 -5 599 178 275 16 chr1 224831577 224831835 -17832518 - L1ME4a LINE L1 -33 6088 5764 2175 101 0 0 chr1 224831849 224832145 -17832208 + AluSx SINE Alu 1 296 -16 538 246 125 53 chr1 224832227 224832508 -17831845 - L1ME LINE L1 -5239 831 531 1047 168 35 5 chr1 224832826 224833028 -17831325 + MER3 DNA MER1_type 1 208 -1 336 250 57 81 chr1 224833029 224833153 -17831200 + MIR3 SINE MIR 58 164 -44 3747 147 64 9 chr1 224833516 224833556 -17830797 + L1MA7 LINE L1 5237 5273 -1018 1547 165 71 0 chr1 224833556 224833823 -17830530 + AluJb SINE Alu 1 286 -26 3747 147 64 9 chr1 224833823 224834490 -17829863 + L1MA7 LINE L1 5273 6001 -290 191 167 0 42 chr1 224834494 224834542 -17829811 + (CATA)n Simple_repeat Simple_repeat 2 47 0 268 115 77 0 chr1 224834542 224834594 -17829759 + L1MA7 LINE L1 5266 5321 -970 1237 154 43 60 chr1 224834594 224834662 -17829691 + L1MA7 LINE L1 5996 6064 -227 896 138 0 0 chr1 224834662 224834792 -17829561 - FLAM_C SINE Alu -3 130 1 1237 154 43 60 chr1 224834792 224835022 -17829331 + L1MA7 LINE L1 6064 6289 -2 1001 125 20 0 chr1 224835169 224835321 -17829032 + AluSg/x SINE Alu 145 299 -11 298 243 19 37 chr1 224836148 224836255 -17828098 + L1MC4 LINE L1 6345 6449 -1593 210 237 0 41 chr1 224836345 224836442 -17827911 + A-rich Low_complexity Low_complexity 3 95 0 940 165 72 5 chr1 224836459 224836653 -17827700 - MER2 DNA MER2_type -135 210 4 1151 246 159 77 chr1 224836675 224836783 -17827570 + L1MC4 LINE L1 6516 6614 -1428 855 78 26 0 chr1 224836783 224836898 -17827455 + L1MA6 LINE L1 6178 6295 -5 1806 158 3 0 chr1 224836906 224837204 -17827149 + AluJo SINE Alu 1 299 -13 1151 246 159 77 chr1 224837204 224838443 -17825910 + L1MC4 LINE L1 6620 8024 -18 1869 150 3 10 chr1 224838443 224838756 -17825597 - AluJo SINE Alu -1 311 1 1151 246 159 77 chr1 224838756 224838777 -17825576 + L1MC4 LINE L1 8024 8042 0 377 215 275 7 chr1 224838960 224839109 -17825244 + MIR SINE MIR 72 260 -2 21 0 0 0 chr1 224839114 224839135 -17825218 + AT_rich Low_complexity Low_complexity 1 21 0 367 265 38 15 chr1 224839475 224839607 -17824746 - L1ME4a LINE L1 -30 6091 5957 3564 151 52 90 chr1 224839957 224840809 -17823544 + Tigger2 DNA MER2_type 1 819 -1899 632 184 0 0 chr1 224840832 224840930 -17823423 + FLAM_C SINE Alu 29 126 -17 292 220 17 0 chr1 224840937 224840996 -17823357 + Tigger2 DNA MER2_type 2648 2707 -11 1668 164 0 20 chr1 224842618 224842911 -17821442 - AluJb SINE Alu -20 292 6 1917 132 7 0 chr1 224843009 224843325 -17821028 + AluSx SINE Alu 1 318 0 2003 98 13 57 chr1 224843837 224844155 -17820198 + AluSx SINE Alu 1 304 -8 261 0 0 0 chr1 224844155 224844184 -17820169 + (TA)n Simple_repeat Simple_repeat 2 30 0 2246 98 0 10 chr1 224844365 224844671 -17819682 + AluSx SINE Alu 1 303 -9 1661 180 107 25 chr1 224844947 224845302 -17819051 - MER21B LTR ERV1 -15 848 465 3137 134 19 55 chr1 224845302 224845577 -17818776 - MER41B LTR ERV1 0 635 390 2097 119 3 0 chr1 224845577 224845889 -17818464 - AluSq SINE Alu 0 313 1 3137 134 19 55 chr1 224845889 224846193 -17818160 - MER41B LTR ERV1 -245 390 77 2220 184 58 30 chr1 224846228 224846657 -17817696 - MER21B LTR ERV1 -422 441 1 2197 95 10 0 chr1 224846895 224847191 -17817162 - AluSp SINE Alu -14 299 1 1579 100 0 54 chr1 224847264 224847523 -17816830 - AluY SINE Alu -1 310 66 2187 105 0 13 chr1 224847595 224847910 -17816443 - AluSx SINE Alu 0 312 2 1290 140 17 30 chr1 224848417 224848653 -17815700 + AluJo SINE Alu 1 233 -79 1740 125 0 12 chr1 224849171 224849427 -17814926 - AluSg SINE Alu -15 295 43 2316 90 0 0 chr1 224849686 224849985 -17814368 - AluSg SINE Alu -11 299 1 21 0 0 0 chr1 224849990 224850011 -17814342 + AT_rich Low_complexity Low_complexity 1 21 0 1506 161 50 37 chr1 224850013 224850311 -17814042 + AluJo SINE Alu 4 305 -7 1721 142 0 42 chr1 224850696 224851005 -17813348 + AluJo SINE Alu 2 297 -15 1942 132 26 3 chr1 224851028 224851331 -17813022 + AluSx SINE Alu 1 310 -2 247 261 180 27 chr1 224852398 224852509 -17811844 + MIR3 SINE MIR 49 176 -32 207 0 0 0 chr1 224854361 224854384 -17809969 + (TA)n Simple_repeat Simple_repeat 2 24 0 1744 170 0 10 chr1 224854454 224854742 -17809611 + AluJo SINE Alu 1 285 -27 942 153 19 60 chr1 224854932 224855046 -17809307 - MER106A DNA MER1_type 0 236 119 333 0 0 0 chr1 224855046 224855083 -17809270 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2220 85 0 0 chr1 224855085 224855367 -17808986 - AluSx SINE Alu -30 282 1 942 153 19 60 chr1 224855367 224855465 -17808888 - MER106A DNA MER1_type -118 118 30 379 279 52 64 chr1 224855475 224855647 -17808706 - L1ME4a LINE L1 -279 5842 5673 2030 116 10 6 chr1 224855863 224856174 -17808179 - AluSx SINE Alu 0 312 1 288 270 70 30 chr1 224856238 224856338 -17808015 - MIR SINE MIR -157 105 2 2323 79 0 3 chr1 224856492 224856796 -17807557 - AluSx SINE Alu -9 303 1 247 238 95 95 chr1 224857069 224857237 -17807116 + MIR SINE MIR 57 224 -38 465 19 0 0 chr1 224858522 224858576 -17805777 + (GA)n Simple_repeat Simple_repeat 1 54 0 290 65 0 22 chr1 224861492 224861538 -17802815 + (CCCCCG)n Simple_repeat Simple_repeat 5 49 0 24 67 0 0 chr1 224861767 224861812 -17802541 + GC_rich Low_complexity Low_complexity 1 45 0 32 26 0 0 chr1 224862059 224862098 -17802255 + GC_rich Low_complexity Low_complexity 1 39 0 1255 185 16 47 chr1 224863229 224863548 -17800805 - AluJo SINE Alu -1 311 3 1782 162 10 3 chr1 224864389 224864686 -17799667 + AluSx SINE Alu 1 299 -13 2118 111 10 0 chr1 224865006 224865304 -17799049 - AluSx SINE Alu -11 301 1 1824 162 3 7 chr1 224866115 224866418 -17797935 - AluJo SINE Alu -10 302 1 883 186 26 49 chr1 224866545 224866771 -17797582 - AluJo SINE Alu -10 302 82 1541 139 27 8 chr1 224867777 224868040 -17796313 - MLT1C LTR MaLR 0 555 199 879 97 14 29 chr1 224868078 224868291 -17796062 + (TCC)n Simple_repeat Simple_repeat 1 209 0 218 156 22 0 chr1 224868302 224868347 -17796006 + CT-rich Low_complexity Low_complexity 2 47 0 2051 117 0 13 chr1 224868676 224868974 -17795379 - AluSx SINE Alu -18 294 1 2557 225 78 7 chr1 224869010 224869690 -17794663 + L1ME2 LINE L1 5407 6134 -30 822 131 175 78 chr1 224869766 224869972 -17794381 - AluJo SINE Alu -1 311 86 233 274 44 15 chr1 224870035 224870170 -17794183 - L1MEd LINE L1 -5081 1038 900 2035 117 3 0 chr1 224870324 224870644 -17793709 + AluSx SINE Alu 1 321 0 311 326 143 29 chr1 224870647 224870920 -17793433 - L1MEd LINE L1 -5311 808 505 887 139 0 0 chr1 224871305 224871434 -17792919 - FLAM_A SINE Alu 0 133 5 1651 138 3 57 chr1 224871506 224871638 -17792715 + AluJb SINE Alu 1 139 -173 1368 50 0 28 chr1 224871638 224871820 -17792533 - L1PA8 LINE L1 -7 6165 5989 1651 138 3 57 chr1 224871820 224871985 -17792368 + AluJb SINE Alu 139 282 -30 2439 42 3 13 chr1 224871985 224872297 -17792056 + AluY SINE Alu 1 309 -2 207 100 0 0 chr1 224872666 224872696 -17791657 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 263 180 80 0 chr1 224873192 224873242 -17791111 + MIR SINE MIR 19 72 -136 196 183 0 84 chr1 224874414 224874485 -17789868 - L2 LINE L2 -84 3229 3165 829 99 0 0 chr1 224874487 224874598 -17789755 + AluSq SINE Alu 1 111 -201 243 0 0 0 chr1 224874599 224874626 -17789727 + (TC)n Simple_repeat Simple_repeat 2 28 0 1689 84 0 0 chr1 224874626 224874841 -17789512 - AluSg SINE Alu -17 295 81 880 174 144 95 chr1 224874841 224875209 -17789144 - LTR7 LTR ERV1 0 450 65 474 139 0 0 chr1 224875209 224875281 -17789072 - AluSg SINE Alu -238 73 2 * 624 129 0 0 chr1 224875281 224875365 -17788988 + AluSq SINE Alu 110 193 -120 3467 54 16 9 chr1 224875367 224875812 -17788541 - LTR7 LTR ERV1 -2 448 1 2645 74 45 13 chr1 224875812 224876192 -17788161 - HERVH LTR ERV1 0 7713 7322 1194 154 58 0 chr1 224876190 224876398 -17787955 - HERVH LTR ERV1 -1894 5819 5600 * 8693 103 5 7 chr1 224876399 224878122 -17786231 - HERVH LTR ERV1 -1818 5273 3492 925 134 6 47 chr1 224878112 224878284 -17786069 - HERVH LTR ERV1 -4423 3290 3126 * 18828 96 23 16 chr1 224878256 224881212 -17783141 - HERVH LTR ERV1 -4726 2987 3 2879 53 133 8 chr1 224881216 224881614 -17782739 - LTR7 LTR ERV1 -2 448 1 561 204 0 0 chr1 224881614 224881717 -17782636 + AluSg/x SINE Alu 188 290 -20 21 0 0 0 chr1 224881995 224882016 -17782337 + AT_rich Low_complexity Low_complexity 1 21 0 262 306 0 0 chr1 224882526 224882588 -17781765 + G-rich Low_complexity Low_complexity 4 65 0 1787 163 7 23 chr1 224882765 224883071 -17781282 - AluJo SINE Alu -11 301 1 333 242 86 70 chr1 224883111 224883297 -17781056 - HAL1 LINE L1 -2272 235 47 576 214 158 36 chr1 224883370 224883730 -17780623 - L1M4 LINE L1 -2843 3303 2900 1426 153 0 0 chr1 224883816 224884031 -17780322 + AluSq SINE Alu 85 299 -14 1695 180 7 10 chr1 224884096 224884390 -17779963 + AluJb SINE Alu 9 301 -11 1706 161 21 14 chr1 224884484 224884770 -17779583 - AluJo SINE Alu -17 295 8 2985 117 2 16 chr1 224884964 224885409 -17778944 + L1PB3 LINE L1 5716 6154 0 2179 128 118 20 chr1 224885412 224885802 -17778551 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr1 224885802 224885826 -17778527 + AT_rich Low_complexity Low_complexity 1 24 0 233 270 186 11 chr1 224886346 224886552 -17777801 + L2 LINE L2 3006 3310 -3 1984 167 74 12 chr1 224887310 224887717 -17776636 - MSTB1 LTR MaLR 0 432 1 2335 107 0 0 chr1 224887753 224888063 -17776290 - AluSg SINE Alu 0 310 1 420 275 45 45 chr1 224888173 224888373 -17775980 - MIR SINE MIR -50 212 13 225 254 42 59 chr1 224888411 224888529 -17775824 - L3 LINE CR1 -116 1461 1346 2276 116 0 0 chr1 224889078 224889389 -17774964 + AluY SINE Alu 1 311 0 388 250 0 21 chr1 224889662 224889758 -17774595 - MER77 LTR ERV1 -4 601 508 1850 166 6 35 chr1 224889789 224890102 -17774251 - AluJo SINE Alu -8 304 1 339 70 0 0 chr1 224890102 224890145 -17774208 - MER77 LTR ERV1 -84 521 479 2007 100 25 7 chr1 224890147 224890428 -17773925 + AluSx SINE Alu 1 286 -26 308 252 63 9 chr1 224890428 224890539 -17773814 + L1MB3 LINE L1 3062 3178 -2968 15241 208 11 10 chr1 224890542 224895161 -17769192 + L1PBa LINE L1 1331 6016 -846 1273 266 48 16 chr1 224895158 224895594 -17768759 + L1MB3 LINE L1 3400 3849 -2297 * 588 173 0 14 chr1 224895595 224895844 -17768509 + AluJo SINE Alu 1 294 -18 6261 194 12 40 chr1 224895847 224896489 -17767864 + L1MB3 LINE L1 3842 4500 -1683 763 157 25 0 chr1 224896489 224896610 -17767743 + FLAM_A SINE Alu 1 124 -9 6261 194 12 40 chr1 224896610 224897725 -17766628 + L1MB3 LINE L1 4500 5510 -673 1891 164 20 0 chr1 224897725 224898018 -17766335 + AluJb SINE Alu 1 299 -13 6261 194 12 40 chr1 224898018 224898674 -17765679 + L1MB3 LINE L1 5510 6183 0 1129 213 9 0 chr1 224898761 224898977 -17765376 - MER20 DNA MER1_type 0 219 2 1506 192 72 23 chr1 224899727 224900076 -17764277 + MLT1B LTR MaLR 25 390 0 298 252 72 27 chr1 224900076 224900132 -17764221 - LTR37B LTR ERV1 -7 461 409 2340 83 3 0 chr1 224900132 224900421 -17763932 - AluSp SINE Alu -23 290 1 298 252 72 27 chr1 224900421 224900474 -17763879 - LTR37B LTR ERV1 -59 409 347 2104 123 0 22 chr1 224900588 224900906 -17763447 - AluSx SINE Alu -1 311 1 1689 171 4 4 chr1 224900929 224901204 -17763149 - AluJo SINE Alu -36 276 2 581 287 129 5 chr1 224901431 224901633 -17762720 - MIR SINE MIR 0 262 36 485 241 42 84 chr1 224901727 224901918 -17762435 + MIR SINE MIR 30 212 -50 2033 126 0 0 chr1 224902175 224902484 -17761869 + AluSx SINE Alu 7 315 0 1170 192 65 46 chr1 224903051 224903312 -17761041 - MSTB LTR MaLR -5 421 156 704 267 195 54 chr1 224903317 224903722 -17760631 - MLT1K LTR MaLR -2 586 125 1975 157 12 30 chr1 224904178 224904510 -17759843 - MER1B DNA MER1_type 0 339 14 2189 103 7 0 chr1 224904715 224905005 -17759348 + AluSx SINE Alu 1 292 -20 1545 143 36 0 chr1 224905626 224905849 -17758504 - AluSx SINE Alu -48 264 34 230 0 33 0 chr1 224905858 224905888 -17758465 + (TG)n Simple_repeat Simple_repeat 2 32 0 476 245 66 13 chr1 224905892 224906043 -17758310 + MLT1H LTR MaLR 12 170 -379 2396 156 31 10 chr1 224906140 224906557 -17757796 - MSTB LTR MaLR 0 426 1 384 216 69 25 chr1 224906598 224906717 -17757636 + MLT1H LTR MaLR 445 546 -3 2450 69 0 25 chr1 224907363 224907680 -17756673 - AluY SINE Alu -2 309 1 265 167 20 98 chr1 224908707 224908809 -17755544 + C-rich Low_complexity Low_complexity 4 97 0 22 56 0 0 chr1 224908833 224908869 -17755484 + GC_rich Low_complexity Low_complexity 1 36 0 33 56 0 0 chr1 224909142 224909196 -17755157 + GC_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr1 224909225 224909247 -17755106 + GC_rich Low_complexity Low_complexity 1 22 0 196 340 35 43 chr1 224910094 224910196 -17754157 - MIR SINE MIR -10 252 150 2560 53 0 0 chr1 224910196 224910495 -17753858 - AluSg SINE Alu -11 299 1 196 340 35 43 chr1 224910495 224910533 -17753820 - MIR SINE MIR -112 150 113 21 0 0 0 chr1 224911269 224911290 -17753063 + AT_rich Low_complexity Low_complexity 1 21 0 554 256 106 26 chr1 224911386 224911659 -17752694 - HAL1 LINE L1 -145 2362 2068 2079 253 63 79 chr1 224911666 224912833 -17751520 - HAL1 LINE L1 -563 1944 795 333 0 0 0 chr1 224912833 224912870 -17751483 + (TG)n Simple_repeat Simple_repeat 2 38 0 2079 253 63 79 chr1 224912870 224912910 -17751443 - HAL1 LINE L1 -1712 795 756 2679 237 103 100 chr1 224912999 224913678 -17750675 - HAL1 LINE L1 0 2507 1831 384 77 0 0 chr1 224913678 224913730 -17750623 + (TA)n Simple_repeat Simple_repeat 2 53 0 2679 237 103 100 chr1 224913730 224915176 -17749177 - HAL1 LINE L1 -676 1831 376 261 161 0 36 chr1 224915176 224915232 -17749121 - MLT1G1 LTR MaLR -9 533 480 1486 196 85 13 chr1 224915234 224915551 -17748802 + MER2 DNA MER2_type 1 340 -5 364 257 63 127 chr1 224915645 224916023 -17748330 - MLT1G1 LTR MaLR -234 361 8 1787 163 7 23 chr1 224916071 224916377 -17747976 - AluJo SINE Alu -11 301 1 333 242 86 70 chr1 224916417 224916603 -17747750 - HAL1 LINE L1 -2272 235 47 576 214 158 36 chr1 224916676 224917036 -17747317 - L1M4 LINE L1 -2843 3303 2900 1434 141 0 0 chr1 224917122 224917345 -17747008 + AluSg/x SINE Alu 85 307 0 241 298 24 0 chr1 224917350 224917434 -17746919 + L1P LINE L1 4024 4109 -2037 26 30 0 0 chr1 224917489 224917522 -17746831 + AT_rich Low_complexity Low_complexity 1 33 0 1938 152 0 3 chr1 224917522 224917811 -17746542 - AluSx SINE Alu -24 288 1 378 62 0 0 chr1 224917873 224917921 -17746432 - L1MB3 LINE L1 -57 6126 6079 768 225 49 28 chr1 224917930 224917955 -17746398 - L1M4 LINE L1 -3247 2899 2876 2567 43 0 3 chr1 224917955 224918258 -17746095 - AluY SINE Alu -9 302 1 768 225 49 28 chr1 224918258 224918517 -17745836 - L1M4 LINE L1 -3270 2876 2609 982 173 0 58 chr1 224918534 224918742 -17745611 + MER3 DNA MER1_type 7 202 -7 236 299 0 15 chr1 224918772 224918839 -17745514 - L1M4 LINE L1 -3558 2588 2523 2123 147 102 49 chr1 224918913 224919266 -17745087 - MER21A LTR ERV1 0 931 547 2135 84 0 87 chr1 224919266 224919621 -17744732 + AluSx SINE Alu 1 328 0 2123 147 102 49 chr1 224919621 224919715 -17744638 - MER21A LTR ERV1 -384 547 459 990 116 64 12 chr1 224919731 224919903 -17744450 - MER21A LTR ERV1 -726 205 25 2464 44 34 10 chr1 224920552 224920848 -17743505 - AluY SINE Alu -8 303 1 2157 136 0 0 chr1 224921390 224921700 -17742653 - AluSp SINE Alu -3 310 1 218 377 55 34 chr1 224921762 224921908 -17742445 + L2 LINE L2 2626 2774 -540 1919 141 13 29 chr1 224922802 224923115 -17741238 + AluJo SINE Alu 1 308 -4 2406 57 17 20 chr1 224923521 224923821 -17740532 - AluSc SINE Alu -10 299 1 25 0 0 0 chr1 224924334 224924359 -17739994 + AT_rich Low_complexity Low_complexity 1 25 0 2264 144 0 6 chr1 224929280 224929626 -17734727 + MER2 DNA MER2_type 1 344 0 2513 85 0 0 chr1 224930666 224930972 -17733381 + AluSx SINE Alu 1 306 -6 302 195 0 81 chr1 224932133 224932220 -17732133 + 7SK RNA RNA 46 125 -68 180 229 0 0 chr1 224936189 224936224 -17728129 + MIR SINE MIR 190 224 -38 487 222 20 46 chr1 224936314 224936467 -17727886 - L1MD3 LINE L1 -2 7993 7845 2342 98 0 3 chr1 224936483 224936780 -17727573 - AluSx SINE Alu -16 296 1 719 143 8 24 chr1 224936800 224936926 -17727427 - FLAM_C SINE Alu -17 126 3 2356 205 71 50 chr1 224936926 224937246 -17727107 - L1MC3 LINE L1 -160 7625 7313 2239 105 7 20 chr1 224937246 224937552 -17726801 + AluSg SINE Alu 1 302 -8 2356 205 71 50 chr1 224937552 224938005 -17726348 - L1MC3 LINE L1 -472 7313 6836 2644 46 0 7 chr1 224938021 224938327 -17726026 + AluY SINE Alu 1 304 -7 1650 166 3 25 chr1 224938326 224938609 -17725744 - AluJo SINE Alu -35 277 1 * 231 381 17 17 chr1 224939645 224939763 -17724590 - L2 LINE L2 -23 3249 3132 319 352 106 18 chr1 224939898 224940125 -17724228 + MIR SINE MIR 9 255 -7 2013 134 3 35 chr1 224940165 224940478 -17723875 + AluJo SINE Alu 5 307 -5 1804 177 182 9 chr1 224940666 224941095 -17723258 + MLT1D LTR MaLR 3 505 0 199 154 103 0 chr1 224941913 224941952 -17722401 - MIR SINE MIR -88 174 132 1887 157 0 20 chr1 224941964 224942264 -17722089 - AluJo SINE Alu -11 301 8 1598 129 3 66 chr1 224942365 224942467 -17721886 + Tigger4(Zombi) DNA MER2_type 1 108 -2623 2050 142 30 0 chr1 224942467 224942763 -17721590 + AluSx SINE Alu 1 305 -7 1598 129 3 66 chr1 224942763 224942946 -17721407 + Tigger4(Zombi) DNA MER2_type 108 268 -2463 1306 133 0 33 chr1 224942938 224943120 -17721233 + MER46B DNA MER2_type 130 179 -2552 * 1010 198 0 0 chr1 224943120 224943282 -17721071 + FRAM SINE Alu 1 162 -4 1306 133 0 33 chr1 224943282 224943339 -17721014 + MER46B DNA MER2_type 179 236 0 654 305 94 0 chr1 224943340 224943553 -17720800 + MIR SINE MIR 11 243 -19 225 219 0 0 chr1 224943748 224943789 -17720564 + L1MB5 LINE L1 4844 4884 -1262 2983 191 34 11 chr1 224943789 224944408 -17719945 + L1MB5 LINE L1 5542 6174 0 852 138 0 0 chr1 224944409 224944532 -17719821 + AluSg/x SINE Alu 181 303 -7 572 238 32 21 chr1 224944532 224944721 -17719632 + L1ME3A LINE L1 5977 6167 -3 896 173 31 6 chr1 224945389 224945551 -17718802 + FRAM SINE Alu 1 166 0 353 299 85 11 chr1 224945581 224945758 -17718595 + L2 LINE L2 2855 3044 -228 2104 206 34 15 chr1 224945774 224946309 -17718044 - MER74A LTR ERVL -13 545 1 257 289 93 10 chr1 224946381 224946478 -17717875 + L2 LINE L2 3181 3285 -28 2506 67 0 0 chr1 224946480 224946780 -17717573 - AluY SINE Alu -11 300 1 830 189 6 72 chr1 224946788 224946968 -17717385 - FAM SINE Alu -7 168 1 352 246 55 27 chr1 224947384 224947494 -17716859 - L1ME LINE L1 -622 5499 5387 1770 103 0 144 chr1 224947496 224947856 -17716497 - AluSg1 SINE Alu -1 308 1 4404 60 7 2 chr1 224947858 224948421 -17715932 - L1PA8 LINE L1 -4 6168 5603 235 296 56 0 chr1 224948437 224948545 -17715808 - L1ME LINE L1 -765 5381 5268 1714 136 104 17 chr1 224949110 224949397 -17714956 - AluSx SINE Alu 0 312 1 1715 179 10 32 chr1 224949403 224949716 -17714637 - AluJo SINE Alu -6 306 1 320 259 54 0 chr1 224949762 224949874 -17714479 - L1MC4 LINE L1 -1 8041 7924 2499 98 0 0 chr1 224950165 224950472 -17713881 + AluSq SINE Alu 1 307 -6 243 234 0 31 chr1 224950488 224950552 -17713801 + GA-rich Low_complexity Low_complexity 4 65 0 2537 66 13 0 chr1 224950812 224951114 -17713239 - AluSp SINE Alu -3 310 5 604 259 20 20 chr1 224951129 224951276 -17713077 - MIR SINE MIR -79 183 37 1608 191 20 7 chr1 224951356 224951655 -17712698 + AluJb SINE Alu 1 303 -9 1944 195 26 23 chr1 224952451 224952840 -17711513 - MLT1B LTR MaLR 0 390 1 210 238 0 0 chr1 224953223 224953265 -17711088 + (TG)n Simple_repeat Simple_repeat 1 42 0 2011 108 24 10 chr1 224954136 224954424 -17709929 + AluSc SINE Alu 18 309 0 733 215 7 7 chr1 224954560 224954709 -17709644 + MLT1A2 LTR MaLR 1 149 -216 1603 193 23 7 chr1 224954820 224955120 -17709233 + AluJo SINE Alu 1 305 -7 894 207 61 10 chr1 224955122 224955320 -17709033 + MLT1A2 LTR MaLR 167 374 0 2343 101 10 3 chr1 224955486 224955794 -17708559 - AluSq SINE Alu -3 310 1 387 0 0 0 chr1 224956167 224956210 -17708143 + (TG)n Simple_repeat Simple_repeat 2 44 0 1964 138 3 3 chr1 224956226 224956509 -17707844 - AluSq SINE Alu -30 283 1 2018 216 49 13 chr1 224956509 224957042 -17707311 + MER74A LTR ERVL 7 558 0 667 146 0 0 chr1 224957422 224957525 -17706828 - FRAM SINE Alu -40 136 34 224 284 27 27 chr1 224958076 224958150 -17706203 - L2 LINE L2 -44 3269 3196 584 288 109 6 chr1 224958153 224958355 -17705998 + MIR SINE MIR 41 261 -1 1429 253 58 25 chr1 224958451 224958937 -17705416 - MLT1J LTR MaLR -4 507 6 1330 133 0 90 chr1 224959009 224959067 -17705286 + AluJb SINE Alu 81 143 -169 2484 89 0 6 chr1 224959067 224959380 -17704973 + AluSq SINE Alu 1 311 -2 1330 133 0 90 chr1 224959380 224959554 -17704799 + AluJb SINE Alu 143 292 -20 208 135 81 0 chr1 224959555 224959592 -17704761 - L2 LINE L2 -21 3292 3253 476 66 0 0 chr1 224959710 224959771 -17704582 - U6 snRNA snRNA -46 61 1 1878 171 10 0 chr1 224959949 224960258 -17704095 + AluJb SINE Alu 1 312 0 375 23 0 0 chr1 224960272 224960316 -17704037 + (TA)n Simple_repeat Simple_repeat 1 44 0 203 295 16 0 chr1 224960333 224960394 -17703959 - MIR3 SINE MIR -7 201 140 285 119 0 85 chr1 224961033 224961092 -17703261 + Alu SINE Alu 246 299 -3 277 291 55 24 chr1 224962844 224962971 -17701382 - L2 LINE L2 -428 2886 2756 379 305 93 60 chr1 224963614 224964044 -17700309 + L1ME4a LINE L1 5512 5926 -195 1880 134 16 44 chr1 224964044 224964365 -17699988 + AluJo SINE Alu 1 312 0 2208 119 7 7 chr1 224964367 224964704 -17699649 + AluSx SINE Alu 1 312 0 379 305 93 60 chr1 224964704 224964812 -17699541 + L1ME4a LINE L1 5926 6076 -45 2350 102 3 0 chr1 224964812 224965115 -17699238 - AluSp SINE Alu -9 304 1 379 305 93 60 chr1 224965115 224965152 -17699201 + L1ME4a LINE L1 6076 6110 -11 1750 205 50 0 chr1 224965737 224966078 -17698275 - MLT1A1 LTR MaLR 0 365 8 2138 148 68 52 chr1 224966303 224966500 -17697853 + MSTB1 LTR MaLR 1 193 -239 2152 112 35 0 chr1 224966500 224966785 -17697568 - AluSx SINE Alu -17 295 1 2138 148 68 52 chr1 224966785 224967012 -17697341 + MSTB1 LTR MaLR 193 432 0 2226 118 3 3 chr1 224967272 224967576 -17696777 - AluSx SINE Alu -8 304 1 2398 97 0 3 chr1 224967600 224967909 -17696444 + AluSg SINE Alu 1 308 -2 912 296 134 10 chr1 224968079 224968565 -17695788 - MER69 DNA AcHobo -667 559 14 914 131 23 0 chr1 224969062 224969192 -17695161 + AluJb SINE Alu 1 133 -179 646 188 0 8 chr1 224969208 224969325 -17695028 - FLAM_A SINE Alu -17 116 1 2784 121 79 131 chr1 224970212 224970950 -17693403 + LTR34 LTR ERV1 1 699 0 2260 121 0 31 chr1 224971230 224971552 -17692801 + AluSx SINE Alu 1 312 0 625 367 83 17 chr1 224972399 224972808 -17691545 + L3 LINE CR1 114 549 -1028 622 101 0 28 chr1 224972823 224972932 -17691421 + L1MA4 LINE L1 6195 6300 0 186 167 69 83 chr1 224973100 224973172 -17691181 - MER5B DNA MER1_type -30 148 78 29 0 0 0 chr1 224973250 224973279 -17691074 + AT_rich Low_complexity Low_complexity 1 29 0 467 294 152 5 chr1 224973371 224973568 -17690785 + L3 LINE CR1 689 914 -663 2000 152 0 10 chr1 224973586 224973883 -17690470 - AluJb SINE Alu -18 294 1 233 261 114 11 chr1 224974099 224974187 -17690166 + MIR3 SINE MIR 111 207 -1 1937 154 85 64 chr1 224974364 224974787 -17689566 + MSTB1 LTR MaLR 1 432 0 2382 82 3 0 chr1 224974863 224975155 -17689198 - AluSp SINE Alu -20 293 1 2181 128 0 0 chr1 224975225 224975521 -17688832 + AluSq SINE Alu 5 300 -13 1736 180 7 10 chr1 224975586 224975880 -17688473 + AluJb SINE Alu 9 301 -11 1693 161 25 14 chr1 224975974 224976259 -17688094 - AluJo SINE Alu -17 295 8 3002 115 2 16 chr1 224976453 224976898 -17687455 + L1PB3 LINE L1 5716 6154 0 2184 126 121 21 chr1 224976901 224977290 -17687063 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr1 224977290 224977314 -17687039 + AT_rich Low_complexity Low_complexity 1 24 0 238 299 146 7 chr1 224977734 224977878 -17686475 + L2 LINE L2 2888 3051 -262 2024 172 74 12 chr1 224978798 224979205 -17685148 - MSTB1 LTR MaLR 0 432 1 2363 107 0 0 chr1 224979241 224979551 -17684802 - AluSg SINE Alu 0 310 1 527 300 30 30 chr1 224979661 224979861 -17684492 - MIR SINE MIR -50 212 13 276 266 47 55 chr1 224979899 224980027 -17684326 - L3 LINE CR1 -116 1461 1335 2303 116 0 0 chr1 224980566 224980877 -17683476 + AluY SINE Alu 1 311 0 357 250 0 21 chr1 224981150 224981246 -17683107 - MER77 LTR ERV1 -4 601 508 1946 156 6 35 chr1 224981277 224981592 -17682761 - AluJo SINE Alu -6 306 1 324 70 0 0 chr1 224981592 224981635 -17682718 - MER77 LTR ERV1 -84 521 479 2031 107 22 41 chr1 224981637 224981954 -17682399 + AluSx SINE Alu 1 311 -1 15241 208 11 10 chr1 224982032 224986651 -17677702 + L1PBa LINE L1 1331 6016 -846 1273 266 48 16 chr1 224986648 224987084 -17677269 + L1MB3 LINE L1 3400 3849 -2297 * 588 173 0 14 chr1 224987085 224987334 -17677019 + AluJo SINE Alu 1 294 -18 6261 194 12 40 chr1 224987337 224987979 -17676374 + L1MB3 LINE L1 3842 4500 -1683 763 157 25 0 chr1 224987979 224988100 -17676253 + FLAM_A SINE Alu 1 124 -9 6261 194 12 40 chr1 224988100 224989215 -17675138 + L1MB3 LINE L1 4500 5510 -673 1891 164 20 0 chr1 224989215 224989508 -17674845 + AluJb SINE Alu 1 299 -13 6261 194 12 40 chr1 224989508 224990164 -17674189 + L1MB3 LINE L1 5510 6183 0 1129 213 9 0 chr1 224990251 224990467 -17673886 - MER20 DNA MER1_type 0 219 2 1506 192 72 23 chr1 224991217 224991566 -17672787 + MLT1B LTR MaLR 25 390 0 298 252 72 27 chr1 224991566 224991622 -17672731 - LTR37B LTR ERV1 -7 461 409 2340 83 3 0 chr1 224991622 224991911 -17672442 - AluSp SINE Alu -23 290 1 298 252 72 27 chr1 224991911 224991964 -17672389 - LTR37B LTR ERV1 -59 409 347 2104 123 0 22 chr1 224992078 224992396 -17671957 - AluSx SINE Alu -1 311 1 1689 171 4 4 chr1 224992419 224992694 -17671659 - AluJo SINE Alu -36 276 2 581 287 129 5 chr1 224992921 224993123 -17671230 - MIR SINE MIR 0 262 36 485 241 42 84 chr1 224993217 224993408 -17670945 + MIR SINE MIR 30 212 -50 2033 126 0 0 chr1 224993665 224993974 -17670379 + AluSx SINE Alu 7 315 0 1170 192 65 46 chr1 224994541 224994802 -17669551 - MSTB LTR MaLR -5 421 156 704 267 195 54 chr1 224994807 224995212 -17669141 - MLT1K LTR MaLR -2 586 125 1975 157 12 30 chr1 224995668 224996000 -17668353 - MER1B DNA MER1_type 0 339 14 2189 103 7 0 chr1 224996205 224996495 -17667858 + AluSx SINE Alu 1 292 -20 1545 143 36 0 chr1 224997116 224997339 -17667014 - AluSx SINE Alu -48 264 34 230 0 33 0 chr1 224997348 224997378 -17666975 + (TG)n Simple_repeat Simple_repeat 2 32 0 476 245 66 13 chr1 224997382 224997533 -17666820 + MLT1H LTR MaLR 12 170 -379 2396 156 31 10 chr1 224997630 224998047 -17666306 - MSTB LTR MaLR 0 426 1 384 216 69 25 chr1 224998088 224998207 -17666146 + MLT1H LTR MaLR 445 546 -3 2450 69 0 25 chr1 224998853 224999170 -17665183 - AluY SINE Alu -2 309 1 265 167 20 98 chr1 225000197 225000299 -17664054 + C-rich Low_complexity Low_complexity 4 97 0 22 56 0 0 chr1 225000323 225000359 -17663994 + GC_rich Low_complexity Low_complexity 1 36 0 33 56 0 0 chr1 225000632 225000686 -17663667 + GC_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr1 225000715 225000737 -17663616 + GC_rich Low_complexity Low_complexity 1 22 0 196 340 35 43 chr1 225001584 225001686 -17662667 - MIR SINE MIR -10 252 150 2560 53 0 0 chr1 225001686 225001985 -17662368 - AluSg SINE Alu -11 299 1 196 340 35 43 chr1 225001985 225002023 -17662330 - MIR SINE MIR -112 150 113 21 0 0 0 chr1 225002759 225002780 -17661573 + AT_rich Low_complexity Low_complexity 1 21 0 554 256 106 26 chr1 225002876 225003149 -17661204 - HAL1 LINE L1 -145 2362 2068 2079 253 63 79 chr1 225003156 225004323 -17660030 - HAL1 LINE L1 -563 1944 795 333 0 0 0 chr1 225004323 225004360 -17659993 + (TG)n Simple_repeat Simple_repeat 2 38 0 2079 253 63 79 chr1 225004360 225004400 -17659953 - HAL1 LINE L1 -1712 795 756 2679 237 103 100 chr1 225004489 225005168 -17659185 - HAL1 LINE L1 0 2507 1831 384 77 0 0 chr1 225005168 225005220 -17659133 + (TA)n Simple_repeat Simple_repeat 2 53 0 2679 237 103 100 chr1 225005220 225006666 -17657687 - HAL1 LINE L1 -676 1831 376 261 161 0 36 chr1 225006666 225006722 -17657631 - MLT1G1 LTR MaLR -9 533 480 1486 196 85 13 chr1 225006724 225007041 -17657312 + MER2 DNA MER2_type 1 340 -5 364 257 63 127 chr1 225007135 225007513 -17656840 - MLT1G1 LTR MaLR -234 361 8 1787 163 7 23 chr1 225007561 225007867 -17656486 - AluJo SINE Alu -11 301 1 333 242 86 70 chr1 225007907 225008093 -17656260 - HAL1 LINE L1 -2272 235 47 576 214 158 36 chr1 225008166 225008526 -17655827 - L1M4 LINE L1 -2843 3303 2900 1434 141 0 0 chr1 225008612 225008835 -17655518 + AluSg/x SINE Alu 83 305 0 241 298 24 0 chr1 225008840 225008924 -17655429 + L1P LINE L1 4024 4109 -2037 26 30 0 0 chr1 225008979 225009012 -17655341 + AT_rich Low_complexity Low_complexity 1 33 0 1938 152 0 3 chr1 225009012 225009301 -17655052 - AluSx SINE Alu -24 288 1 378 62 0 0 chr1 225009363 225009411 -17654942 - L1MB3 LINE L1 -57 6126 6079 768 225 49 28 chr1 225009420 225009445 -17654908 - L1M4 LINE L1 -3247 2899 2876 2567 43 0 3 chr1 225009445 225009748 -17654605 - AluY SINE Alu -9 302 1 768 225 49 28 chr1 225009748 225010007 -17654346 - L1M4 LINE L1 -3270 2876 2609 982 173 0 58 chr1 225010024 225010232 -17654121 + MER3 DNA MER1_type 7 202 -7 236 299 0 15 chr1 225010262 225010329 -17654024 - L1M4 LINE L1 -3558 2588 2523 2123 147 102 49 chr1 225010403 225010756 -17653597 - MER21A LTR ERV1 0 931 547 2135 84 0 87 chr1 225010756 225011111 -17653242 + AluSx SINE Alu 1 328 0 2123 147 102 49 chr1 225011111 225011205 -17653148 - MER21A LTR ERV1 -384 547 459 990 116 64 12 chr1 225011221 225011393 -17652960 - MER21A LTR ERV1 -726 205 25 2464 44 34 10 chr1 225012042 225012338 -17652015 - AluY SINE Alu -8 303 1 2157 136 0 0 chr1 225012880 225013190 -17651163 - AluSp SINE Alu -3 310 1 218 377 55 34 chr1 225013252 225013398 -17650955 + L2 LINE L2 2626 2774 -540 1919 141 13 29 chr1 225014292 225014605 -17649748 + AluJo SINE Alu 1 308 -4 2406 57 17 20 chr1 225015011 225015311 -17649042 - AluSc SINE Alu -10 299 1 25 0 0 0 chr1 225015824 225015849 -17648504 + AT_rich Low_complexity Low_complexity 1 25 0 2264 144 0 6 chr1 225020770 225021116 -17643237 + MER2 DNA MER2_type 1 344 0 2555 79 0 0 chr1 225022156 225022460 -17641893 + AluSx SINE Alu 1 304 -8 296 281 74 69 chr1 225022664 225022881 -17641472 + L1MDa LINE L1 14 231 -6309 3365 217 180 29 chr1 225023459 225024039 -17640314 + L1MDa LINE L1 916 1407 -5133 2432 90 3 0 chr1 225024039 225024340 -17640013 + AluSg SINE Alu 1 302 -8 3365 217 180 29 chr1 225024340 225025139 -17639214 + L1MDa LINE L1 1407 2084 -4456 2030 117 3 26 chr1 225025139 225025434 -17638919 + AluSx SINE Alu 2 291 -21 180 0 0 0 chr1 225025434 225025454 -17638899 + (CCA)n Simple_repeat Simple_repeat 3 22 0 2030 117 3 26 chr1 225025454 225025465 -17638888 + AluSx SINE Alu 291 301 -11 3365 217 180 29 chr1 225025465 225025685 -17638668 + L1MDa LINE L1 2084 2269 -4271 2065 108 33 30 chr1 225025685 225025990 -17638363 + AluSx SINE Alu 1 306 -6 3365 217 180 29 chr1 225025990 225026148 -17638205 + L1MDa LINE L1 2269 2869 -3671 2282 240 82 3 chr1 225026385 225027105 -17637248 + L1MDa LINE L1 2868 3644 -2896 1655 133 9 0 chr1 225027168 225027401 -17636952 - AluJb SINE Alu -20 292 58 233 262 39 29 chr1 225027433 225027536 -17636817 - L1M LINE L1 -711 5410 5307 316 290 117 61 chr1 225027559 225027900 -17636453 - L1M4 LINE L1 -824 5322 5002 1919 145 3 3 chr1 225027900 225028190 -17636163 - AluJb SINE Alu -22 290 1 316 290 117 61 chr1 225028190 225028706 -17635647 - L1M4 LINE L1 -1144 5002 4417 652 231 159 14 chr1 225028886 225029176 -17635177 + L1MC4a LINE L1 5727 6058 -1750 241 300 140 0 chr1 225029948 225030098 -17634255 + L1ME LINE L1 5532 5702 -419 1826 165 14 7 chr1 225030231 225030528 -17633825 + AluJo SINE Alu 1 299 -13 2171 82 50 0 chr1 225030752 225031034 -17633319 + AluSq SINE Alu 11 306 -7 1800 153 0 27 chr1 225032226 225032360 -17631993 + AluJo SINE Alu 1 137 -175 2353 89 0 0 chr1 225032360 225032664 -17631689 + AluSg SINE Alu 1 304 0 1800 153 0 27 chr1 225032664 225032767 -17631586 + AluJo SINE Alu 137 293 -19 362 177 0 0 chr1 225032767 225032829 -17631524 + AluJ/FRAM SINE Alu 232 293 -9 1571 157 66 18 chr1 225035000 225035286 -17629067 + AluJo SINE Alu 1 300 -12 270 246 90 71 chr1 225035785 225035828 -17628525 + L1MC5 LINE L1 7690 7731 -230 2398 100 0 0 chr1 225035828 225036138 -17628215 - AluSg SINE Alu 0 310 1 270 246 90 71 chr1 225036138 225036305 -17628048 + L1MC5 LINE L1 7731 7904 -57 35 24 0 0 chr1 225036340 225036382 -17627971 + AT_rich Low_complexity Low_complexity 1 42 0 959 114 0 40 chr1 225036391 225036540 -17627813 + FLAM_C SINE Alu 1 143 0 1740 162 47 3 chr1 225039513 225039810 -17624543 - AluSx SINE Alu -2 310 1 710 274 153 15 chr1 225040334 225040588 -17623765 + L1MC4a LINE L1 5395 5709 -2099 477 0 0 0 chr1 225040588 225040641 -17623712 + (TA)n Simple_repeat Simple_repeat 1 53 0 710 274 153 15 chr1 225040641 225040726 -17623627 + L1MC4a LINE L1 5709 5781 -2027 1268 137 104 5 chr1 225040758 225040970 -17623383 - MER46A DNA MER2_type -1 235 3 246 257 64 18 chr1 225041052 225041161 -17623192 + L1MC4a LINE L1 5833 5946 -1862 508 302 121 59 chr1 225041488 225042651 -17621702 + L2 LINE L2 1512 2746 -568 521 306 18 6 chr1 225042658 225042828 -17621525 + MER5B DNA MER1_type 1 172 -6 215 282 150 91 chr1 225042875 225043215 -17621138 + L2 LINE L2 2913 3272 0 23 0 0 0 chr1 225043290 225043313 -17621040 + AT_rich Low_complexity Low_complexity 1 23 0 204 215 108 43 chr1 225044459 225044552 -17619801 + MIR3 SINE MIR 109 207 -1 249 200 0 0 chr1 225045683 225045733 -17618620 - L2 LINE L2 -1 3312 3263 533 252 60 14 chr1 225045770 225045986 -17618367 - MIR SINE MIR -12 250 22 640 228 35 7 chr1 225046285 225046430 -17617923 + MER3 DNA MER1_type 1 149 -60 625 250 36 32 chr1 225046431 225046651 -17617702 - MIR SINE MIR -29 233 13 1434 169 102 0 chr1 225047665 225047920 -17616433 + AluJo SINE Alu 19 299 -13 2167 79 43 0 chr1 225048064 225048341 -17616012 - AluSq SINE Alu -24 289 1 236 284 35 26 chr1 225048648 225048764 -17615589 + L2 LINE L2 2271 2387 -927 226 169 62 0 chr1 225049240 225049305 -17615048 + L2 LINE L2 3162 3230 -42 1910 221 108 57 chr1 225049352 225050108 -17614245 + MER21B LTR ERV1 7 801 -62 3303 34 0 0 chr1 225050668 225051055 -17613298 - L1PA3 LINE L1 0 6155 5769 275 241 81 11 chr1 225051245 225051332 -17613021 - L2 LINE L2 -28 3285 3193 1805 241 206 52 chr1 225051518 225052677 -17611676 - HAL1 LINE L1 -725 1782 445 310 270 138 66 chr1 225052707 225052996 -17611357 - HAL1 LINE L1 -2190 317 8 2280 90 0 3 chr1 225053077 225053366 -17610987 - AluSq SINE Alu -25 288 1 23 54 0 0 chr1 225054002 225054039 -17610314 + AT_rich Low_complexity Low_complexity 1 37 0 1528 194 11 18 chr1 225057589 225057872 -17606481 + AluJo SINE Alu 1 281 -31 672 249 38 42 chr1 225057874 225058139 -17606214 + L1MEd LINE L1 942 1205 -4914 6627 202 95 49 chr1 225058409 225058504 -17605849 + L1MD1 LINE L1 9 98 -6442 2140 100 13 7 chr1 225058504 225058804 -17605549 + AluSx SINE Alu 5 306 -6 6627 202 95 49 chr1 225058804 225058862 -17605491 + L1MD1 LINE L1 98 152 -6388 2195 111 0 33 chr1 225058862 225059169 -17605184 + AluSq SINE Alu 1 297 -16 6627 202 95 49 chr1 225059169 225061051 -17603302 + L1MD1 LINE L1 152 2385 -4155 279 0 0 0 chr1 225061051 225061082 -17603271 + (TA)n Simple_repeat Simple_repeat 2 32 0 6627 202 95 49 chr1 225061082 225061672 -17602681 + L1MD1 LINE L1 2385 2946 -3594 3343 176 32 8 chr1 225061685 225062338 -17602015 + L1MD1 LINE L1 5968 6636 0 194 291 43 26 chr1 225063846 225063963 -17600390 - L2 LINE L2 -907 2407 2289 371 293 123 14 chr1 225063986 225064198 -17600155 - L2 LINE L2 -1354 1960 1726 2245 117 0 0 chr1 225064734 225065032 -17599321 + AluSx SINE Alu 1 298 -14 181 311 90 54 chr1 225065108 225065385 -17598968 - L2 LINE L2 -2498 816 530 276 134 45 9 chr1 225065810 225065922 -17598431 + (TA)n Simple_repeat Simple_repeat 1 116 0 224 328 80 0 chr1 225066329 225066454 -17597899 - L2 LINE L2 -956 2358 2224 2265 96 0 22 chr1 225066976 225067290 -17597063 + AluSg SINE Alu 4 310 0 2223 183 24 18 chr1 225067390 225067843 -17596510 - MLT1C LTR MaLR -4 463 8 1829 157 0 43 chr1 225068534 225068859 -17595494 + AluJb SINE Alu 1 311 -1 2013 140 7 3 chr1 225069146 225069439 -17594914 - AluSx SINE Alu -18 294 1 5805 6 15 16 chr1 225070461 225071146 -17593207 + LTR11 LTR ERV 1 684 0 35 63 0 0 chr1 225071453 225071516 -17592837 + GC_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr1 225072489 225072512 -17591841 + AT_rich Low_complexity Low_complexity 1 23 0 1304 157 5 0 chr1 225072535 225072739 -17591614 - AluJo SINE Alu -107 205 1 648 291 71 41 chr1 225074458 225074850 -17589503 - MLT1I LTR MaLR -4 405 2 2113 109 0 62 chr1 225074938 225075260 -17589093 - AluSx SINE Alu -10 302 1 233 245 19 0 chr1 225075311 225075364 -17588989 - L1MC4a LINE L1 -1129 6679 6626 3694 264 89 45 chr1 225075367 225075644 -17588709 - L1MEc LINE L1 -4259 2137 1874 2147 140 35 30 chr1 225075644 225076050 -17588303 - L1MB3 LINE L1 -3 6180 5773 3694 264 89 45 chr1 225076050 225077459 -17586894 - L1MEc LINE L1 -4522 1874 377 1203 246 92 80 chr1 225077520 225077727 -17586626 + L2 LINE L2 2127 2330 -983 2053 99 3 11 chr1 225077727 225078040 -17586313 + AluSg SINE Alu 1 311 0 1203 246 92 80 chr1 225078040 225078109 -17586244 + L2 LINE L2 2330 2397 -916 1743 215 93 60 chr1 225078109 225078645 -17585708 - MLT2B3 LTR ERVL 0 554 1 1203 246 92 80 chr1 225078645 225078963 -17585390 + L2 LINE L2 2397 2710 -603 1945 102 4 11 chr1 225078963 225079256 -17585097 + AluSx SINE Alu 21 311 0 1203 246 92 80 chr1 225079256 225079830 -17584523 + L2 LINE L2 2710 3313 0 2121 132 7 0 chr1 225079926 225080222 -17584131 + AluSx SINE Alu 1 298 -14 627 286 43 0 chr1 225080299 225080484 -17583869 - MIR SINE MIR -13 249 57 223 283 94 9 chr1 225080600 225080706 -17583647 - MIR SINE MIR -21 241 127 2078 102 0 0 chr1 225081378 225081669 -17582684 + AluSg SINE Alu 18 308 0 640 215 39 29 chr1 225081709 225081878 -17582475 - L1ME1 LINE L1 -1 6183 6010 1270 192 39 0 chr1 225082316 225082550 -17581803 - MLT1C LTR MaLR 0 467 225 2073 117 3 55 chr1 225082550 225082876 -17581477 - AluSx SINE Alu -3 309 1 2480 90 0 0 chr1 225083205 225083516 -17580837 - AluSx SINE Alu -1 311 1 321 297 17 8 chr1 225083704 225083822 -17580531 + L2 LINE L2 3195 3313 0 1982 210 28 26 chr1 225084832 225085010 -17579343 + MLT1C LTR MaLR 1 177 -290 1774 136 44 0 chr1 225085010 225085318 -17579035 + AluJo SINE Alu 1 320 0 1982 210 28 26 chr1 225085318 225085604 -17578749 + MLT1C LTR MaLR 177 467 0 412 229 28 63 chr1 225085621 225085781 -17578572 + MIR SINE MIR 37 190 -58 2201 101 20 36 chr1 225085896 225086202 -17578151 + AluSx SINE Alu 1 301 -11 1127 218 172 7 chr1 225086336 225086621 -17577732 - MLT1F LTR MaLR 0 542 211 199 276 172 37 chr1 225086961 225087095 -17577258 - MIR SINE MIR 0 262 111 192 77 0 0 chr1 225087632 225087658 -17576695 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 199 314 33 58 chr1 225087882 225088003 -17576350 - MIR3 SINE MIR -51 157 40 2330 104 0 3 chr1 225088070 225088368 -17575985 - AluSx SINE Alu -15 297 1 1950 133 18 0 chr1 225088539 225088855 -17575498 - AluSx SINE Alu 0 321 1 23 33 0 0 chr1 225088861 225088891 -17575462 + AT_rich Low_complexity Low_complexity 1 30 0 546 253 168 59 chr1 225089439 225090273 -17574080 - L2 LINE L2 0 3313 2323 1834 222 114 24 chr1 225090273 225090817 -17573536 - MLT1G1 LTR MaLR -1 594 2 546 253 168 59 chr1 225090817 225091024 -17573329 - L2 LINE L2 -990 2323 2140 2066 129 3 3 chr1 225091059 225091353 -17573000 - AluSx SINE Alu -18 294 1 321 211 28 0 chr1 225092084 225092155 -17572198 + L2 LINE L2 2972 3044 -228 1711 152 48 0 chr1 225092585 225092702 -17571651 + AluJb SINE Alu 1 111 -303 354 45 0 0 chr1 225092702 225092746 -17571607 + (CA)n Simple_repeat Simple_repeat 1 44 0 1711 152 48 0 chr1 225092746 225093029 -17571324 + AluJb SINE Alu 111 414 0 328 145 13 13 chr1 225093762 225093838 -17570515 + CT-rich Low_complexity Low_complexity 2 77 0 309 236 39 39 chr1 225094109 225094236 -17570117 - L1ME4a LINE L1 -1 6120 5994 1338 180 20 118 chr1 225094244 225094288 -17570065 + MLT1A1 LTR MaLR 1 48 -317 2274 100 0 3 chr1 225094288 225094587 -17569766 + AluSx SINE Alu 1 298 -14 1338 180 20 118 chr1 225094587 225094947 -17569406 + MLT1A1 LTR MaLR 48 365 0 261 0 0 0 chr1 225094971 225095000 -17569353 + (CA)n Simple_repeat Simple_repeat 2 30 0 930 264 80 47 chr1 225095003 225095212 -17569141 - L1ME4a LINE L1 -201 5920 5719 2056 137 0 25 chr1 225095212 225095526 -17568827 - AluJb SINE Alu -6 306 1 930 264 80 47 chr1 225095526 225095741 -17568612 - L1ME4a LINE L1 -402 5719 5482 957 128 0 26 chr1 225095743 225095899 -17568454 - AluSx SINE Alu -1 309 158 711 206 103 14 chr1 225095963 225096109 -17568244 - AluSx SINE Alu -152 160 2 2634 237 12 14 chr1 225096110 225096760 -17567593 - L1MEc LINE L1 -3322 2758 2110 950 180 11 11 chr1 225096767 225096945 -17567408 - AluJo SINE Alu -13 299 122 2216 240 79 58 chr1 225096945 225097316 -17567037 - L1MEc LINE L1 -4112 2149 1787 2330 110 0 0 chr1 225097316 225097617 -17566736 - AluSx SINE Alu -11 301 1 2216 240 79 58 chr1 225097617 225097635 -17566718 - L1MEc LINE L1 -4474 1787 1771 1036 215 72 0 chr1 225097635 225097844 -17566509 - MER58A DNA MER1_type 0 224 1 2216 240 79 58 chr1 225097844 225098014 -17566339 - L1MEc LINE L1 -4490 1771 1606 3963 58 8 2 chr1 225098014 225098501 -17565852 + LTR2B LTR ERV1 1 490 0 2216 240 79 58 chr1 225098501 225098940 -17565413 - L1MEc LINE L1 -4655 1606 1128 258 213 0 0 chr1 225098983 225099030 -17565323 - L1MEc LINE L1 -4982 1088 1042 185 274 9 0 chr1 225099051 225099157 -17565196 + (CCA)n Simple_repeat Simple_repeat 1 107 0 249 270 0 63 chr1 225099184 225099295 -17565058 - MIR SINE MIR -26 236 133 1069 169 6 6 chr1 225099837 225100009 -17564344 - FRAM SINE Alu -6 170 1 478 195 0 59 chr1 225100171 225100289 -17564064 - MER94 DNA DNA -20 114 4 867 226 96 29 chr1 225100841 225100896 -17563457 - MER58A DNA MER1_type -2196 224 174 1679 160 193 11 chr1 225100896 225101258 -17563095 - MSTA LTR MaLR 0 428 1 867 226 96 29 chr1 225101258 225101410 -17562943 - MER58A DNA MER1_type -2246 174 3 3190 167 162 109 chr1 225102618 225102725 -17561628 + LTR28 LTR ERV1 1 101 -919 2089 141 7 0 chr1 225102725 225103029 -17561324 - AluSx SINE Alu -6 306 1 3190 167 162 109 chr1 225103029 225103890 -17560463 + LTR28 LTR ERV1 101 1020 0 286 267 30 0 chr1 225104144 225104245 -17560108 - L1ME4a LINE L1 0 6121 6018 1727 150 146 20 chr1 225104280 225104719 -17559634 + LTR54B LTR ERV1 3 496 -2 334 288 202 26 chr1 225104759 225105255 -17559098 - L1ME4a LINE L1 -208 5913 5329 735 311 28 27 chr1 225105612 225105975 -17558378 - L1ME4a LINE L1 -406 5756 5403 2307 97 3 13 chr1 225106160 225106468 -17557885 - AluSg SINE Alu -5 305 1 2215 106 0 0 chr1 225106632 225106934 -17557419 + AluSx SINE Alu 3 304 0 495 268 181 5 chr1 225107004 225107209 -17557144 + MIR SINE MIR 11 251 -11 924 111 6 62 chr1 225107293 225107455 -17556898 + L1PB3 LINE L1 5999 6151 -3 1968 133 90 9 chr1 225107527 225107872 -17556481 + LTR1B LTR ERV1 1 373 -453 743 86 6 38 chr1 225107871 225108045 -17556308 - MER4A LTR ERV1 -186 478 252 * 333 125 25 62 chr1 225108071 225108151 -17556202 - MER4A LTR ERV1 -517 147 71 216 188 24 47 chr1 225110725 225110810 -17553543 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 208 231 0 39 chr1 225110888 225110966 -17553387 + T-rich Low_complexity Low_complexity 3 77 0 3100 111 12 43 chr1 225111055 225111225 -17553128 - LTR8A LTR ERV1 -227 500 326 2724 13 7 3 chr1 225111225 225111526 -17552827 + AluYa5 SINE Alu 2 303 -8 3100 111 12 43 chr1 225111526 225111869 -17552484 - LTR8A LTR ERV1 -401 326 3 1040 274 81 28 chr1 225111961 225112429 -17551924 + MLT1J LTR MaLR 11 503 -8 319 201 0 34 chr1 225112501 225112591 -17551762 + LTR28 LTR ERV1 1 82 -554 * 690 161 0 16 chr1 225112583 225112707 -17551646 + MER61D LTR ERV1 114 235 -266 1711 163 6 69 chr1 225115616 225115977 -17548376 + MER46B DNA MER2_type 1 213 -23 1559 140 42 49 chr1 225115977 225116293 -17548060 - AluJo SINE Alu 0 315 2 648 217 0 0 chr1 225116337 225116452 -17547901 - FLAM_A SINE Alu -18 115 1 649 229 86 0 chr1 225116531 225116706 -17547647 + MIR SINE MIR 67 256 -6 310 255 43 28 chr1 225117286 225117427 -17546926 + MIR SINE MIR 72 214 -48 345 273 0 0 chr1 225118287 225118364 -17545989 - MER81 DNA DNA -36 78 2 2373 102 0 3 chr1 225118540 225118854 -17545499 - AluSp SINE Alu 0 313 1 471 203 6 16 chr1 225120157 225120339 -17544014 + (CA)n Simple_repeat Simple_repeat 1 180 0 250 192 19 0 chr1 225120339 225120391 -17543962 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 373 214 0 16 chr1 225120409 225120535 -17543818 + (CA)n Simple_repeat Simple_repeat 2 125 0 294 276 102 0 chr1 225121106 225121233 -17543120 + MIR SINE MIR 53 192 -70 651 208 7 14 chr1 225121338 225121482 -17542871 + L1MB7 LINE L1 6017 6159 -25 2145 103 11 3 chr1 225121489 225121771 -17542582 - AluSc SINE Alu -25 284 1 272 208 28 14 chr1 225121816 225121888 -17542465 + L1ME3A LINE L1 6093 6165 -5 1903 122 10 20 chr1 225121889 225122184 -17542169 + AluSx SINE Alu 1 292 -20 1694 170 0 70 chr1 225122192 225122521 -17541832 + AluJo SINE Alu 1 306 -6 262 239 177 9 chr1 225122532 225122604 -17541749 - MER112 DNA MER1_type -103 157 98 231 114 0 0 chr1 225122604 225122639 -17541714 + (TG)n Simple_repeat Simple_repeat 2 36 0 262 239 177 9 chr1 225122639 225122679 -17541674 - MER112 DNA MER1_type -162 98 26 288 96 39 109 chr1 225124040 225124196 -17540157 + (ATGGTG)n Simple_repeat Simple_repeat 2 146 0 299 89 11 132 chr1 225124219 225124409 -17539944 + (ATGGTG)n Simple_repeat Simple_repeat 2 168 0 3699 163 34 6 chr1 225124790 225125472 -17538881 - L1MB3 LINE L1 0 6183 5483 22 0 0 0 chr1 225125476 225125498 -17538855 + AT_rich Low_complexity Low_complexity 1 22 0 977 122 0 43 chr1 225125553 225125717 -17538636 + AluJb SINE Alu 156 312 0 262 158 0 40 chr1 225125721 225125797 -17538556 + GA-rich Low_complexity Low_complexity 4 76 0 1999 115 123 39 chr1 225125881 225126263 -17538090 + LTR24C LTR ERV1 221 634 -1 250 134 30 0 chr1 225126263 225126330 -17538023 + (TA)n Simple_repeat Simple_repeat 1 69 0 645 193 43 7 chr1 225126330 225126470 -17537883 + L1MC4 LINE L1 7898 8042 0 296 316 44 7 chr1 225126529 225126665 -17537688 - MER5A DNA MER1_type -22 167 27 275 286 34 42 chr1 225127204 225127323 -17537030 - L2 LINE L2 -5 3267 3150 185 108 27 0 chr1 225127513 225127550 -17536803 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2189 115 3 0 chr1 225127874 225128179 -17536174 + AluSx SINE Alu 1 306 -6 936 264 138 52 chr1 225128312 225128608 -17535745 - L1MC4a LINE L1 -1866 5942 5673 2186 111 0 0 chr1 225128608 225128897 -17535456 - AluSx SINE Alu -2 310 22 936 264 138 52 chr1 225128897 225129221 -17535132 - L1MC4a LINE L1 -2135 5673 5268 379 261 97 88 chr1 225129452 225129995 -17534358 - L1MC4a LINE L1 -1101 5045 4491 2163 92 0 7 chr1 225129995 225130288 -17534065 - AluSx SINE Alu 0 312 18 379 261 97 88 chr1 225130288 225130514 -17533839 - L1MC4a LINE L1 -1655 4491 4269 1245 203 6 48 chr1 225130602 225130918 -17533435 - MER69 DNA AcHobo -519 2007 1705 39 22 0 0 chr1 225131612 225131658 -17532695 + AT_rich Low_complexity Low_complexity 1 46 0 1865 173 3 7 chr1 225131816 225132111 -17532242 + AluJo SINE Alu 1 294 -18 2090 103 7 17 chr1 225132341 225132631 -17531722 - AluY SINE Alu -24 287 1 687 301 29 36 chr1 225132636 225132942 -17531411 - L1ME4a LINE L1 -296 5825 5522 237 33 0 0 chr1 225133113 225133143 -17531210 + (TATG)n Simple_repeat Simple_repeat 2 31 0 1742 141 3 96 chr1 225133143 225133456 -17530897 - AluSq SINE Alu -29 284 1 340 307 73 20 chr1 225133468 225133618 -17530735 + MIR SINE MIR 53 210 -52 597 182 83 0 chr1 225133618 225133739 -17530614 + MLT1J2 LTR MaLR 9 139 -311 226 248 55 97 chr1 225133797 225133907 -17530446 + MLT1J1 LTR MaLR 256 361 -85 2238 109 0 0 chr1 225133907 225134221 -17530132 - AluSx SINE Alu 0 314 1 300 299 11 0 chr1 225134221 225134308 -17530045 + MLT1I LTR MaLR 322 409 0 269 240 58 58 chr1 225134386 225134490 -17529863 + MIR3 SINE MIR 86 189 -19 2811 155 96 0 chr1 225134552 225135050 -17529303 + LTR64 LTR ERVK 2 547 -11 346 287 8 70 chr1 225135088 225135217 -17529136 + MIR SINE MIR 2 122 -140 2188 119 0 3 chr1 225135217 225135519 -17528834 - AluY SINE Alu -10 301 1 1159 230 33 41 chr1 225135538 225135618 -17528735 - L1M4 LINE L1 -1678 4468 4389 2434 196 34 19 chr1 225135618 225136083 -17528270 + MER70A LTR ERVL 1 472 0 1159 230 33 41 chr1 225136083 225136394 -17527959 - L1M4 LINE L1 -1757 4389 4080 447 275 17 0 chr1 225136394 225136514 -17527839 + MIR SINE MIR 136 257 -5 824 176 0 0 chr1 225136781 225136917 -17527436 - FRAM SINE Alu -2 174 39 225 108 0 0 chr1 225137711 225137748 -17526605 + (TC)n Simple_repeat Simple_repeat 1 37 0 1383 183 0 8 chr1 225137748 225137994 -17526359 - AluJo SINE Alu -25 287 44 225 319 139 12 chr1 225138847 225139013 -17525340 + MIR SINE MIR 35 221 -41 317 335 110 0 chr1 225140329 225140484 -17523869 - MIR SINE MIR -14 248 77 309 327 96 32 chr1 225141877 225142085 -17522268 + MIR SINE MIR 28 252 -10 305 256 13 0 chr1 225142085 225142163 -17522190 - MER116 DNA Mariner 0 80 2 309 327 96 32 chr1 225142163 225142174 -17522179 + MIR SINE MIR 252 261 -1 936 257 73 59 chr1 225142229 225142638 -17521715 + LTR16A LTR ERVL 30 444 -6 462 128 0 23 chr1 225143280 225143366 -17520987 + FLAM_A SINE Alu 59 142 0 2225 106 0 0 chr1 225143879 225144180 -17520173 + AluSx SINE Alu 1 301 -11 270 297 238 0 chr1 225144277 225144378 -17519975 - MIR SINE MIR -110 152 28 209 281 0 18 chr1 225144540 225144597 -17519756 + MIR3 SINE MIR 104 159 -49 764 280 24 0 chr1 225144600 225144811 -17519542 + MER58A DNA MER1_type 4 219 -5 234 247 55 41 chr1 225145549 225145622 -17518731 + MER112 DNA MER1_type 6 79 -181 351 44 0 0 chr1 225145645 225145690 -17518663 + (TG)n Simple_repeat Simple_repeat 2 46 0 382 289 58 26 chr1 225145701 225145770 -17518583 + MER112 DNA MER1_type 65 130 -130 1867 197 21 0 chr1 225145770 225146105 -17518248 + MER2 DNA MER2_type 3 344 0 382 289 58 26 chr1 225146105 225146225 -17518128 + MER112 DNA MER1_type 130 260 0 386 269 53 57 chr1 225146272 225146462 -17517891 + MIR3 SINE MIR 11 204 -4 210 118 0 0 chr1 225147049 225147083 -17517270 + (TG)n Simple_repeat Simple_repeat 2 35 0 886 235 190 57 chr1 225147480 225147877 -17516476 - Charlie7 DNA MER1_type -35 2577 2234 1592 158 64 14 chr1 225147877 225148174 -17516179 - AluJo SINE Alu 0 312 1 1582 172 17 0 chr1 225148176 225148466 -17515887 - AluJo SINE Alu -17 295 1 886 235 190 57 chr1 225148466 225148644 -17515709 - Charlie7 DNA MER1_type -378 2234 1922 4669 157 38 8 chr1 225148652 225149606 -17514747 - L1MB8 LINE L1 -9 6169 5187 1543 238 98 62 chr1 225149607 225150019 -17514334 - Charlie7 DNA MER1_type -676 1936 1540 231 36 0 0 chr1 225150019 225150047 -17514306 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1916 59 18 28 chr1 225150054 225150340 -17514013 - AluY SINE Alu -28 283 1 1543 238 98 62 chr1 225150340 225150675 -17513678 - Charlie7 DNA MER1_type -1077 1535 1154 2413 54 0 0 chr1 225150676 225150972 -17513381 + AluY SINE Alu 2 297 -14 1035 69 8 0 chr1 225150988 225151119 -17513234 + AluSq/x SINE Alu 1 132 -180 1860 261 62 57 chr1 225151128 225151940 -17512413 - Charlie7 DNA MER1_type -1451 1161 346 24 0 0 0 chr1 225152288 225152312 -17512041 + AT_rich Low_complexity Low_complexity 1 24 0 1531 176 30 13 chr1 225152798 225153099 -17511254 + AluJo SINE Alu 1 306 -6 303 257 95 56 chr1 225153111 225153290 -17511063 - L1ME3A LINE L1 -208 5962 5777 499 269 71 62 chr1 225153462 225153890 -17510463 - L1ME3A LINE L1 -515 5647 5209 516 243 205 38 chr1 225153919 225154129 -17510224 + MIR SINE MIR 13 257 -5 745 308 92 55 chr1 225154268 225154862 -17509491 - L1ME3A LINE L1 -1076 5070 4499 2084 129 3 0 chr1 225154862 225155165 -17509188 - AluSx SINE Alu -8 304 1 745 308 92 55 chr1 225155165 225155824 -17508529 - L1ME3A LINE L1 -1647 4499 3755 678 309 155 48 chr1 225155894 225156006 -17508347 - L1ME3A LINE L1 -3168 2978 2879 2534 150 11 27 chr1 225156006 225156446 -17507907 + Tigger2a DNA MER2_type 2 434 0 678 309 155 48 chr1 225156446 225156947 -17507406 - L1ME3A LINE L1 -3267 2879 2267 1636 132 25 96 chr1 225156965 225157121 -17507232 + L1MA4 LINE L1 5963 6129 -171 1617 191 30 0 chr1 225157121 225157424 -17506929 + AluJb SINE Alu 1 312 0 1636 132 25 96 chr1 225157424 225157631 -17506722 + L1MA4 LINE L1 6129 6300 0 493 154 0 0 chr1 225158195 225158273 -17506080 + AluS SINE Alu 2 79 -233 577 202 42 44 chr1 225158283 225158436 -17505917 + MLT1F LTR MaLR 398 585 -5 2696 162 18 40 chr1 225158564 225159031 -17505322 - LTR45B LTR ERV1 0 489 32 2268 82 7 0 chr1 225159031 225159325 -17505028 + AluSx SINE Alu 5 300 -12 2696 162 18 40 chr1 225159325 225159356 -17504997 - LTR45B LTR ERV1 -457 32 2 264 355 11 0 chr1 225159789 225159882 -17504471 + MIR3 SINE MIR 104 197 -11 21 0 0 0 chr1 225160024 225160045 -17504308 + AT_rich Low_complexity Low_complexity 1 21 0 1424 100 17 38 chr1 225160070 225160309 -17504044 - L1PA14 LINE L1 0 6161 5928 234 322 0 8 chr1 225160841 225160959 -17503394 + (TG)n Simple_repeat Simple_repeat 2 118 0 862 139 0 0 chr1 225162778 225162907 -17501446 - FLAM_C SINE Alu 0 133 5 369 0 0 0 chr1 225163337 225163378 -17500975 + (CA)n Simple_repeat Simple_repeat 2 42 0 1707 151 0 58 chr1 225163514 225163839 -17500514 - AluJb SINE Alu -6 306 1 215 181 14 0 chr1 225164291 225164363 -17499990 + (TG)n Simple_repeat Simple_repeat 1 73 0 3494 56 5 7 chr1 225164561 225165010 -17499343 - LTR7 LTR ERV1 -2 448 1 2513 80 56 13 chr1 225165010 225165386 -17498967 - HERVH LTR ERV1 0 7713 7322 1355 153 19 0 chr1 225165384 225165600 -17498753 - HERVH LTR ERV1 -1894 5819 5600 * 4475 133 5 1 chr1 225165601 225166261 -17498092 - HERVH LTR ERV1 -2564 5149 4488 3453 115 0 6 chr1 225166263 225166768 -17497585 - HERVH LTR ERV1 -3720 3993 3492 929 122 27 0 chr1 225166758 225166905 -17497448 - HERVH LTR ERV1 -4423 3290 3140 * 21088 85 9 33 chr1 225166884 225169951 -17494402 - HERVH LTR ERV1 -4718 2995 1 412 58 19 0 chr1 225169953 225170005 -17494348 - LTR7 LTR ERV1 -2 448 396 3454 60 2 13 chr1 225170020 225170473 -17493880 - LTR7 LTR ERV1 -2 448 1 1946 100 0 4 chr1 225170474 225170743 -17493610 - AluSq SINE Alu -45 268 1 1509 166 41 37 chr1 225171561 225171856 -17492497 - AluJb SINE Alu -16 296 1 248 218 178 40 chr1 225172691 225172792 -17491561 + MIR SINE MIR 27 141 -67 2036 114 7 0 chr1 225172887 225173185 -17491168 - AluSx SINE Alu -12 300 1 502 239 51 8 chr1 225175526 225175643 -17488710 - MER115 DNA AcHobo -389 304 183 369 281 62 34 chr1 225175803 225175981 -17488372 - MLT1K LTR MaLR -2 586 404 369 123 77 15 chr1 225176501 225176566 -17487787 + Tigger2 DNA MER2_type 1 69 -2649 * 2745 135 11 9 chr1 225176564 225177002 -17487351 + Tigger2 DNA MER2_type 2280 2718 0 185 107 54 36 chr1 225177052 225177108 -17487245 + CT-rich Low_complexity Low_complexity 6 62 0 214 336 168 0 chr1 225178091 225178158 -17486195 - MIR3 SINE MIR -63 145 91 2104 113 3 0 chr1 225178158 225178459 -17485894 + AluSx SINE Alu 1 302 -10 214 336 168 0 chr1 225178459 225178504 -17485849 - MIR3 SINE MIR -117 91 14 547 209 82 76 chr1 225179176 225179334 -17485019 - MER34 LTR ERV1 -383 159 1 192 327 118 0 chr1 225179338 225179448 -17484905 - MIR SINE MIR -70 192 70 1290 156 148 41 chr1 225180493 225180763 -17483590 - AluSc SINE Alu 0 299 1 237 71 0 0 chr1 225181565 225181593 -17482760 + U6 snRNA snRNA 1 28 -79 2412 73 0 0 chr1 225181764 225182067 -17482286 - AluSc SINE Alu -6 303 1 410 319 35 0 chr1 225182173 225182314 -17482039 - MIR SINE MIR -70 192 47 1278 193 63 23 chr1 225182503 225182803 -17481550 + AluJo SINE Alu 1 312 0 1084 128 6 6 chr1 225183183 225183347 -17481006 + AluSq SINE Alu 1 164 -149 3944 145 24 50 chr1 225183634 225183978 -17480375 + LTR8A LTR ERV1 3 354 -373 2575 27 3 0 chr1 225183978 225184278 -17480075 - AluYa5 SINE Alu -8 303 3 3944 145 24 50 chr1 225184278 225184677 -17479676 + LTR8A LTR ERV1 354 727 0 606 81 0 12 chr1 225185439 225185525 -17478828 + MER4A LTR ERV1 1 85 -579 2556 217 83 101 chr1 225385525 225385860 -17278493 - L1MC4a LINE L1 -925 6883 6543 306 50 0 0 chr1 225385860 225385900 -17278453 + (TG)n Simple_repeat Simple_repeat 1 40 0 2556 217 83 101 chr1 225385900 225386509 -17277844 - L1MC4a LINE L1 -1265 6543 5959 355 121 17 0 chr1 225386509 225386567 -17277786 - U7 snRNA snRNA -4 59 1 2556 217 83 101 chr1 225386567 225386711 -17277642 - L1MC4a LINE L1 -1849 5959 5814 793 242 48 12 chr1 225386723 225387027 -17277326 - L1MC4a LINE L1 -747 5399 5195 * 3564 163 77 32 chr1 225387020 225387661 -17276692 - L1MB3 LINE L1 0 6183 5572 198 0 0 0 chr1 225387661 225387683 -17276670 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3564 163 77 32 chr1 225387683 225387698 -17276655 - L1MB3 LINE L1 -611 5572 5559 1999 125 7 0 chr1 225387698 225387993 -17276360 + AluSg SINE Alu 1 297 -13 3564 163 77 32 chr1 225387993 225388076 -17276277 - L1MB3 LINE L1 -624 5559 5410 268 356 19 30 chr1 225388106 225388376 -17275977 + MLT2F LTR ERVL 397 663 0 313 351 15 8 chr1 225388411 225388545 -17275808 - L1M4 LINE L1 -3743 2403 2269 27 0 0 0 chr1 225388756 225388783 -17275570 + AT_rich Low_complexity Low_complexity 1 27 0 475 282 106 66 chr1 225389045 225389209 -17275144 - HAL1b LINE L1 -706 642 486 1754 137 33 0 chr1 225389209 225389479 -17274874 - AluSx SINE Alu -33 279 1 475 282 106 66 chr1 225389479 225389907 -17274446 - HAL1b LINE L1 -862 486 26 25 31 0 0 chr1 225391841 225391873 -17272480 + GC_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1 225391891 225391913 -17272440 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 225392015 225392043 -17272310 + GC_rich Low_complexity Low_complexity 1 28 0 274 220 17 59 chr1 225392076 225392194 -17272159 + C-rich Low_complexity Low_complexity 3 115 0 312 48 0 0 chr1 225393901 225393943 -17270410 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 365 265 29 0 chr1 225395593 225395695 -17268658 + MIR SINE MIR 85 189 -73 1081 131 8 98 chr1 225398705 225398743 -17265610 - MER20 DNA MER1_type -4 215 175 1425 200 57 0 chr1 225398743 225399023 -17265330 - AluJo SINE Alu -16 296 1 1081 131 8 98 chr1 225399023 225399220 -17265133 - MER20 DNA MER1_type -44 175 1 476 219 32 6 chr1 225399417 225399524 -17264829 - MIR SINE MIR -46 162 57 2295 88 16 0 chr1 225399760 225400065 -17264288 - AluSx SINE Alu -2 310 1 577 284 62 59 chr1 225400202 225400523 -17263830 - L2 LINE L2 0 3313 2992 2331 222 45 25 chr1 225402035 225402633 -17261720 - HsTC2 DNA Tc2 -5 1893 1284 948 161 6 33 chr1 225403437 225403617 -17260736 - FRAM SINE Alu -1 175 1 761 235 152 26 chr1 225405310 225405540 -17258813 + MIR SINE MIR 4 262 0 225 318 45 0 chr1 225406452 225406540 -17257813 + MIR SINE MIR 3 94 -168 220 276 224 15 chr1 225408946 225409142 -17255211 - L2 LINE L2 -219 3053 2817 2649 140 32 18 chr1 225409820 225410263 -17254090 + LTR32 LTR ERVL 18 466 -5 473 327 76 28 chr1 225411489 225411700 -17252653 + MIR SINE MIR 28 248 -14 368 251 78 84 chr1 225412140 225412319 -17252034 - MER5B DNA MER1_type 0 178 1 1599 167 90 3 chr1 225412754 225413077 -17251276 - L1MB2 LINE L1 -9 6162 5812 1676 171 55 38 chr1 225413081 225413181 -17251172 - L1MB5 LINE L1 0 6174 6077 2149 107 0 0 chr1 225413181 225413481 -17250872 - AluY SINE Alu -11 300 1 1676 171 55 38 chr1 225413481 225413724 -17250629 - L1MB5 LINE L1 -97 6077 5825 3499 169 52 19 chr1 225413737 225413784 -17250569 - L1MB2 LINE L1 -3 6168 6124 1841 107 32 45 chr1 225413784 225414093 -17250260 - AluSx SINE Alu -3 309 5 3499 169 52 19 chr1 225414093 225414777 -17249576 - L1MB2 LINE L1 -47 6124 5413 1896 125 22 29 chr1 225415705 225416018 -17248335 - AluY SINE Alu 0 311 1 324 254 225 6 chr1 225416213 225416386 -17247967 + LTR50 LTR ERVL 9 219 -576 695 254 167 0 chr1 225416469 225416721 -17247632 + LTR50 LTR ERVL 502 795 0 180 0 0 0 chr1 225416821 225416841 -17247512 + (T)n Simple_repeat Simple_repeat 1 20 0 1846 74 0 0 chr1 225417059 225417288 -17247065 - AluSx SINE Alu -83 229 1 258 309 82 18 chr1 225417586 225417696 -17246657 - MIR SINE MIR -35 227 111 313 250 10 58 chr1 225418232 225418279 -17246074 + MIR SINE MIR 56 104 -158 1498 173 153 0 chr1 225418279 225418579 -17245774 + MER7A DNA MER2_type 1 344 -2 313 250 10 58 chr1 225418579 225418635 -17245718 + MIR SINE MIR 104 154 -108 1348 159 19 52 chr1 225418661 225418931 -17245422 - AluJo SINE Alu -27 285 25 204 284 80 45 chr1 225419328 225419416 -17244937 + L2 LINE L2 3221 3311 -2 493 241 31 99 chr1 225419565 225419889 -17244464 - L1MC4 LINE L1 0 8042 7741 353 255 0 61 chr1 225420280 225420378 -17243975 - MER5A DNA MER1_type -51 138 47 370 273 98 39 chr1 225420614 225420812 -17243541 + MIR SINE MIR 19 225 -37 448 270 220 6 chr1 225421598 225421757 -17242596 + MIR SINE MIR 60 252 -10 1300 223 61 74 chr1 225422769 225423312 -17241041 - L1MC4 LINE L1 -11 8031 7496 288 316 35 0 chr1 225423444 225423558 -17240795 - L1MC4 LINE L1 -562 7480 7363 1900 82 0 50 chr1 225423658 225423939 -17240414 + AluSq SINE Alu 32 298 -15 530 252 110 45 chr1 225424546 225424792 -17239561 - MIR SINE MIR 0 262 1 236 356 37 11 chr1 225424945 225425133 -17239220 + MLT1H LTR MaLR 108 300 -249 239 247 26 13 chr1 225425730 225425807 -17238546 + CT-rich Low_complexity Low_complexity 1 78 0 193 309 0 0 chr1 225426109 225426164 -17238189 - L3 LINE CR1 -34 1543 1489 2420 147 22 40 chr1 225426543 225426998 -17237355 - L1MB3 LINE L1 -34 6149 5703 2544 141 61 2 chr1 225427700 225428127 -17236226 - LTR47A LTR ERVL 0 452 1 277 277 36 27 chr1 225428641 225428753 -17235600 + MER103 DNA DNA 5 117 -49 296 307 102 8 chr1 225429258 225429385 -17234968 + L2 LINE L2 3172 3310 -3 2302 70 3 25 chr1 225429596 225429910 -17234443 - AluSx SINE Alu -4 308 2 299 344 64 19 chr1 225429912 225430069 -17234284 - MIR SINE MIR -74 188 25 213 196 0 0 chr1 225430071 225430117 -17234236 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 1767 149 88 0 chr1 225430177 225430485 -17233868 + MER7A DNA MER2_type 14 346 0 275 210 148 0 chr1 225431504 225431585 -17232768 + L2 LINE L2 3200 3292 -21 184 316 70 18 chr1 225434461 225434575 -17229778 + MER5B DNA MER1_type 59 178 0 600 226 11 51 chr1 225434660 225434837 -17229516 + MER104 DNA Tc2 5 174 -6 271 290 79 32 chr1 225435054 225435193 -17229160 - MIR SINE MIR -65 143 10 242 210 250 48 chr1 225436168 225436292 -17228061 - MIR SINE MIR -86 176 28 1955 130 13 33 chr1 225436573 225436873 -17227480 + AluJo SINE Alu 1 294 -18 306 0 0 0 chr1 225436896 225436930 -17227423 + (TG)n Simple_repeat Simple_repeat 1 34 0 414 192 0 0 chr1 225437576 225437648 -17226705 + Tigger5 DNA MER2_type 7 78 -2245 427 190 0 0 chr1 225437648 225437727 -17226626 - Tigger5 DNA MER2_type -3 2320 2242 346 228 13 13 chr1 225437718 225437797 -17226556 + Tigger5 DNA MER2_type 2243 2321 -2 * 2268 191 7 35 chr1 225437834 225438264 -17226089 - MER47B DNA MER2_type 0 418 1 2384 92 0 7 chr1 225438831 225439134 -17225219 + AluSq SINE Alu 1 301 -12 326 296 225 18 chr1 225439721 225439890 -17224463 + MIR SINE MIR 33 236 -26 331 303 30 30 chr1 225440282 225440447 -17223906 + (TATG)n Simple_repeat Simple_repeat 3 167 0 * 385 263 22 50 chr1 225440431 225440610 -17223743 + (CATG)n Simple_repeat Simple_repeat 3 176 0 308 197 14 42 chr1 225441233 225441304 -17223049 - MLT1K LTR MaLR -10 578 510 183 250 0 42 chr1 225443133 225443181 -17221172 + MIR SINE MIR 60 105 -103 3572 141 55 57 chr1 225444093 225444292 -17220061 - L1MC1 LINE L1 -1 6332 6134 2167 105 0 0 chr1 225444292 225444568 -17219785 - AluSg SINE Alu -13 297 22 3572 141 55 57 chr1 225444568 225444615 -17219738 - L1MC1 LINE L1 -199 6134 6088 13727 137 65 13 chr1 225444615 225445519 -17218834 - Tigger1 DNA MER2_type 0 2418 1563 2371 99 0 0 chr1 225445519 225445813 -17218540 - AluSc SINE Alu -15 294 1 13727 137 65 13 chr1 225445813 225447206 -17217147 - Tigger1 DNA MER2_type -855 1563 1 3572 141 55 57 chr1 225447206 225447729 -17216624 - L1MC1 LINE L1 -245 6088 5564 1390 275 76 72 chr1 225448122 225449310 -17215043 - L1MC5 LINE L1 -51 7910 6719 180 0 0 0 chr1 225449443 225449463 -17214890 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 394 280 26 63 chr1 225450958 225451147 -17213206 - MIR SINE MIR -24 238 57 22 35 0 0 chr1 225451174 225451203 -17213150 + AT_rich Low_complexity Low_complexity 1 29 0 644 138 28 0 chr1 225451234 225451343 -17213010 - FLAM_A SINE Alu -5 137 26 273 197 0 0 chr1 225451900 225451961 -17212392 + (TG)n Simple_repeat Simple_repeat 2 62 0 823 299 107 12 chr1 225452389 225452717 -17211636 + MARNA DNA Mariner 140 498 -88 2165 114 3 0 chr1 225456669 225456958 -17207395 - AluSc SINE Alu -19 290 1 180 0 0 0 chr1 225457543 225457563 -17206790 + (TG)n Simple_repeat Simple_repeat 1 20 0 1650 206 0 7 chr1 225458609 225458905 -17205448 - AluJo SINE Alu -18 294 1 362 149 40 0 chr1 225458993 225459067 -17205286 - L1PA16 LINE L1 -10 6156 6080 259 254 84 99 chr1 225459416 225459558 -17204795 - L3 LINE CR1 -287 1290 1151 248 250 0 0 chr1 225459628 225459680 -17204673 + MIR SINE MIR 205 256 -6 3445 189 77 18 chr1 225460235 225460974 -17203379 + LTR39 LTR ERV1 1 783 0 2833 95 21 51 chr1 225461023 225461495 -17202858 + LTR3b LTR ERVK 1 458 -42 775 220 17 6 chr1 225462464 225462637 -17201716 - L1ME LINE L1 -415 5706 5532 2264 98 3 25 chr1 225462724 225463039 -17201314 - AluSx SINE Alu -4 308 1 2345 82 14 0 chr1 225463398 225463692 -17200661 - AluY SINE Alu -13 298 1 185 297 18 90 chr1 225464165 225464276 -17200077 + MIR SINE MIR 90 192 -70 308 189 0 116 chr1 225464373 225464468 -17199885 - HsTC2 DNA Tc2 -1806 92 9 414 269 43 103 chr1 225464910 225464995 -17199358 + MIR SINE MIR 32 121 -141 1591 163 46 25 chr1 225464995 225465278 -17199075 - AluJo SINE Alu -23 289 1 414 269 43 103 chr1 225465278 225465426 -17198927 + MIR SINE MIR 121 251 -11 3783 148 22 10 chr1 225467404 225467525 -17196828 - MER41B LTR ERV1 0 635 517 2381 102 0 9 chr1 225467525 225467840 -17196513 + AluSx SINE Alu 1 312 0 3783 148 22 10 chr1 225467840 225468345 -17196008 - MER41B LTR ERV1 -118 517 1 2486 143 85 2 chr1 225470602 225471063 -17193290 - L1MB2 LINE L1 -12 6159 5661 1806 148 23 23 chr1 225471068 225471378 -17192975 - AluJo SINE Alu -2 310 1 750 244 51 5 chr1 225471712 225471909 -17192444 + MIR SINE MIR 46 251 -11 209 268 80 45 chr1 225472455 225472567 -17191786 + MIR SINE MIR 33 148 -60 335 271 9 28 chr1 225473509 225473616 -17190737 + MER94 DNA DNA 1 105 -29 1928 147 19 3 chr1 225477865 225478172 -17186181 - AluJo SINE Alu 0 312 1 1813 133 36 0 chr1 225478187 225478466 -17185887 - AluJb SINE Alu -23 289 1 4418 78 7 0 chr1 225480968 225481518 -17182835 - MER41A LTR ERV1 0 554 1 306 255 66 133 chr1 225481657 225481928 -17182425 - MER112 DNA MER1_type -6 254 2 874 224 0 0 chr1 225482348 225482513 -17181840 - FRAM SINE Alu -1 165 1 1447 174 42 86 chr1 225483791 225484152 -17180201 + MLT1B LTR MaLR 40 384 -6 334 286 48 0 chr1 225484901 225485006 -17179347 - MER69 DNA AcHobo 0 2526 2417 300 53 0 0 chr1 225485492 225485530 -17178823 + (GA)n Simple_repeat Simple_repeat 1 38 0 216 0 0 0 chr1 225485530 225485554 -17178799 + (TG)n Simple_repeat Simple_repeat 2 25 0 248 322 34 62 chr1 225486391 225486537 -17177816 + MIR SINE MIR 99 240 -22 2529 223 54 40 chr1 225486567 225487291 -17177062 + L1ME1 LINE L1 5439 6334 0 1777 110 0 8 chr1 225489753 225490008 -17174345 + AluSx SINE Alu 40 292 -20 234 305 135 48 chr1 225490333 225490726 -17173627 - MLT1H LTR MaLR 0 549 123 413 267 136 28 chr1 225490887 225491063 -17173290 + MIR SINE MIR 8 202 -60 3683 133 33 45 chr1 225491707 225492366 -17171987 + MER39B LTR ERV1 3 653 0 234 0 0 0 chr1 225492449 225492475 -17171878 + (CAA)n Simple_repeat Simple_repeat 2 27 0 189 224 53 53 chr1 225492781 225492857 -17171496 - MIR SINE MIR -14 248 173 363 271 72 104 chr1 225493215 225493466 -17170887 + MIR SINE MIR 14 256 -6 2097 92 17 0 chr1 225493819 225494114 -17170239 - AluY SINE Alu -11 300 1 354 294 111 26 chr1 225494528 225494871 -17169482 - L1ME4a LINE L1 -207 5914 5543 1725 151 0 11 chr1 225496445 225496730 -17167623 - AluJo SINE Alu -29 283 2 22 0 0 0 chr1 225497177 225497199 -17167154 + AT_rich Low_complexity Low_complexity 1 22 0 1932 204 47 2 chr1 225497979 225498405 -17165948 - L1MC3 LINE L1 -16 7769 7325 276 289 3 6 chr1 225498591 225498683 -17165670 - MIR SINE MIR -64 144 77 258 295 107 16 chr1 225499227 225499349 -17165004 - MER5B DNA MER1_type 0 178 46 2334 153 57 5 chr1 225499845 225500250 -17164103 - MSTB LTR MaLR 0 426 1 1542 198 133 78 chr1 225501281 225501792 -17162561 + MLT1F1 LTR MaLR 1 539 -28 182 357 41 20 chr1 225503212 225503310 -17161043 - L2 LINE L2 -21 3292 3193 213 299 147 61 chr1 225503665 225504107 -17160246 + L2 LINE L2 2256 2735 -579 307 274 226 0 chr1 225504678 225504784 -17159569 + MIR SINE MIR 112 241 -21 613 158 32 0 chr1 225504811 225504969 -17159384 + CT-rich Low_complexity Low_complexity 3 165 0 286 272 299 0 chr1 225505190 225505337 -17159016 + MIR SINE MIR 60 250 -12 285 256 16 41 chr1 225507722 225507843 -17156510 - MER112 DNA MER1_type 0 260 143 7832 214 40 55 chr1 225507871 225509215 -17155138 - L1MC1 LINE L1 -1 6612 5249 2057 104 7 0 chr1 225509215 225509502 -17154851 - AluSx SINE Alu -23 289 1 7832 214 40 55 chr1 225509502 225510843 -17153510 - L1MC1 LINE L1 -1364 5249 3889 872 107 15 8 chr1 225510843 225510974 -17153379 - AluSq/x SINE Alu -180 132 1 7832 214 40 55 chr1 225510974 225512980 -17151373 - L1MC1 LINE L1 -2724 3889 1853 2064 110 7 3 chr1 225512980 225513279 -17151074 + AluSx SINE Alu 1 300 -12 7832 214 40 55 chr1 225513279 225513476 -17150877 - L1MC1 LINE L1 -4760 1853 1654 2130 94 7 10 chr1 225513476 225513773 -17150580 - AluY SINE Alu -15 296 1 7832 214 40 55 chr1 225513773 225514545 -17149808 - L1MC1 LINE L1 -4959 1654 872 423 98 0 0 chr1 225514545 225514606 -17149747 + (TG)n Simple_repeat Simple_repeat 2 62 0 7832 214 40 55 chr1 225514606 225515416 -17148937 - L1MC1 LINE L1 -5741 872 20 2391 178 156 81 chr1 225516624 225517392 -17146961 - LTR1B LTR ERV1 0 826 1 261 262 183 73 chr1 225517673 225517837 -17146516 + MIR3 SINE MIR 22 203 -5 1586 182 79 3 chr1 225518918 225519258 -17145095 - L1MB3 LINE L1 0 6183 5818 328 258 82 0 chr1 225519441 225519538 -17144815 - L1ME4a LINE L1 -18 6103 5999 353 232 79 26 chr1 225520178 225520308 -17144045 - L1MB3 LINE L1 -435 5686 5551 857 317 87 49 chr1 225520394 225520794 -17143559 + L3 LINE CR1 942 1374 -203 1609 187 13 3 chr1 225520794 225521093 -17143260 - AluJo SINE Alu -6 306 5 857 317 87 49 chr1 225521093 225521288 -17143065 + L3 LINE CR1 1374 1560 -17 345 273 66 33 chr1 225521483 225521604 -17142749 + MIR SINE MIR 16 140 -68 198 310 60 10 chr1 225525520 225525620 -17138733 + L2 LINE L2 2976 3080 -192 205 224 104 15 chr1 225526905 225526972 -17137381 - MIR SINE MIR -56 206 134 237 178 0 0 chr1 225527035 225527080 -17137273 + (CGTG)n Simple_repeat Simple_repeat 2 46 0 513 234 190 44 chr1 225528701 225528927 -17135426 - MER112 DNA MER1_type -1 259 1 272 340 21 11 chr1 225529159 225529253 -17135100 + L2 LINE L2 2979 3073 -199 2371 70 0 6 chr1 225529335 225529647 -17134706 - AluSg SINE Alu 0 310 1 205 259 56 0 chr1 225530724 225530778 -17133575 + MIR SINE MIR 90 146 -116 514 286 130 51 chr1 225530967 225531337 -17133016 + L2 LINE L2 2827 3225 -88 208 304 124 48 chr1 225531341 225531516 -17132837 - MIR3 SINE MIR -63 145 3 1533 172 3 62 chr1 225533111 225533419 -17130934 - AluJo SINE Alu -14 298 9 1911 134 6 25 chr1 225533435 225533749 -17130604 - AluSx SINE Alu 0 312 5 191 231 0 123 chr1 225534054 225534119 -17130234 - L2 LINE L2 -2 3311 3255 260 311 55 24 chr1 225535079 225535243 -17129110 - MIR SINE MIR -35 227 59 209 333 0 25 chr1 225536031 225536112 -17128241 + MIR SINE MIR 14 92 -170 347 267 217 38 chr1 225536203 225536443 -17127910 + L2 LINE L2 3031 3313 0 248 229 0 0 chr1 225536437 225536485 -17127868 + MIR SINE MIR 202 249 -13 * 1457 192 56 0 chr1 225536878 225537165 -17127188 - AluJo SINE Alu -9 303 1 746 114 0 23 chr1 225537197 225537328 -17127025 - L1MA4 LINE L1 0 6300 6173 1189 248 154 7 chr1 225537473 225537928 -17126425 - L2 LINE L2 -682 2632 2111 258 305 47 42 chr1 225538087 225538277 -17126076 + MER20B DNA MER1_type 1 191 -592 1220 167 91 75 chr1 225538515 225538844 -17125509 + MLT1B LTR MaLR 1 338 -52 1776 125 68 4 chr1 225538844 225539123 -17125230 + AluJo SINE Alu 1 297 -15 1220 167 91 75 chr1 225539123 225539177 -17125176 + MLT1B LTR MaLR 338 390 0 180 319 8 118 chr1 225540717 225540797 -17123556 - MIR SINE MIR -1 261 197 1408 191 81 0 chr1 225540797 225541070 -17123283 + AluJo SINE Alu 1 295 -17 180 319 8 118 chr1 225541070 225541108 -17123245 - MIR SINE MIR -65 197 156 1054 256 47 11 chr1 225542635 225543028 -17121325 - L1MDa LINE L1 -3712 2848 2430 656 300 133 23 chr1 225543075 225543400 -17120953 - L1MDa LINE L1 -4379 2342 2054 2125 108 3 0 chr1 225543400 225543696 -17120657 - AluSq SINE Alu -16 297 1 656 300 133 23 chr1 225543696 225544234 -17120119 - L1MDa LINE L1 -4667 2054 1328 362 271 31 31 chr1 225544694 225544823 -17119530 - L1MDa LINE L1 -5936 594 466 190 364 61 30 chr1 225545003 225545102 -17119251 + MIR SINE MIR 105 206 -56 1216 189 77 23 chr1 225545752 225546012 -17118341 - AluJo SINE Alu -38 274 1 1903 272 66 32 chr1 225546285 225546828 -17117525 - L2 LINE L2 0 3313 2790 1033 188 45 130 chr1 225546828 225547227 -17117126 - MLT1A1 LTR MaLR 0 365 1 1903 272 66 32 chr1 225547227 225547602 -17116751 - L2 LINE L2 -523 2790 2353 564 303 82 12 chr1 225547602 225547846 -17116507 + MIR SINE MIR 2 262 0 1903 272 66 32 chr1 225547846 225548005 -17116348 - L2 LINE L2 -960 2353 2201 2287 148 3 6 chr1 225548076 225548414 -17115939 + MER1B DNA MER1_type 1 337 0 515 204 81 127 chr1 225549389 225549610 -17114743 - MER46C DNA MER2_type -125 213 3 463 325 97 67 chr1 225550839 225551260 -17113093 - L1M4 LINE L1 -2470 3676 3243 2137 58 0 0 chr1 225551309 225551570 -17112783 - AluY SINE Alu -10 301 41 488 280 154 9 chr1 225552005 225552219 -17112134 - MIR SINE MIR -5 257 13 323 119 0 34 chr1 225552476 225552535 -17111818 - FLAM_A SINE Alu -1 132 76 2146 111 0 13 chr1 225552739 225553055 -17111298 - AluSx SINE Alu 0 312 1 361 321 16 58 chr1 225555101 225555291 -17109062 + MER5A DNA MER1_type 3 184 -5 384 253 191 10 chr1 225556139 225556443 -17107910 + L1ME3A LINE L1 3070 3428 -2718 372 249 107 6 chr1 225556556 225556725 -17107628 + L1ME3A LINE L1 3588 3773 -2373 256 138 35 35 chr1 225556746 225556862 -17107491 + (TA)n Simple_repeat Simple_repeat 1 116 0 341 313 178 14 chr1 225556862 225557143 -17107210 + L1ME3A LINE L1 3796 4122 -2024 539 329 170 4 chr1 225557235 225557736 -17106617 + L1ME3A LINE L1 4230 4813 -1333 375 310 37 23 chr1 225557914 225558177 -17106176 - L1 LINE L1 -1333 4813 4540 633 320 81 8 chr1 225558401 225559056 -17105297 + L1ME3A LINE L1 5150 5864 -306 23 0 0 0 chr1 225559272 225559295 -17105058 + AT_rich Low_complexity Low_complexity 1 23 0 2269 78 0 3 chr1 225562617 225562912 -17101441 + AluSg SINE Alu 1 294 -16 2911 170 104 46 chr1 225562957 225563699 -17100654 - LTR48 LTR ERV1 -2 785 1 1794 154 7 7 chr1 225564216 225564522 -17099831 + AluJo SINE Alu 1 306 -6 2289 99 0 3 chr1 225565464 225565757 -17098596 - AluSx SINE Alu -20 292 1 768 203 137 1 chr1 225567224 225567569 -17096784 - MSTB1 LTR MaLR -1 431 10 1254 189 175 21 chr1 225567991 225568414 -17095939 - Charlie4a DNA MER1_type -8 500 13 258 232 0 52 chr1 225569244 225569340 -17095013 - MIR SINE MIR -62 146 58 184 196 20 20 chr1 225569542 225569593 -17094760 + MIR SINE MIR 67 117 -145 1555 131 96 11 chr1 225569671 225569931 -17094422 + AluJo SINE Alu 9 290 -22 1129 203 136 11 chr1 225570824 225571164 -17093189 + MLT1B LTR MaLR 19 390 0 213 263 50 71 chr1 225571489 225571588 -17092765 - MIR SINE MIR -146 116 20 243 282 239 21 chr1 225571600 225571742 -17092611 - MER5B DNA MER1_type -2 176 4 543 276 16 0 chr1 225571745 225571872 -17092481 - MER5A DNA MER1_type 0 189 61 332 147 18 73 chr1 225571874 225572030 -17092323 - AluSp/q SINE Alu 0 349 200 763 158 25 0 chr1 225572201 225572321 -17092032 - FLAM_C SINE Alu -19 124 2 180 0 0 0 chr1 225573875 225573895 -17090458 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 691 195 9 0 chr1 225573936 225574158 -17090195 + GA-rich Low_complexity Low_complexity 1 224 0 373 280 7 13 chr1 225574662 225574812 -17089541 + (CACCC)n Simple_repeat Simple_repeat 3 151 0 1975 158 0 0 chr1 225574916 225575214 -17089139 - AluJo SINE Alu -14 298 1 2689 55 0 3 chr1 225575757 225576068 -17088285 - AluY SINE Alu -1 310 1 215 122 49 0 chr1 225576081 225576122 -17088231 - MIR SINE MIR -110 152 110 387 217 14 0 chr1 225576366 225576435 -17087918 + MER5A DNA MER1_type 7 76 -113 1683 160 39 11 chr1 225576436 225576718 -17087635 + AluJo SINE Alu 3 292 -20 2204 92 14 0 chr1 225576727 225577031 -17087322 + AluSq SINE Alu 1 308 0 331 286 70 53 chr1 225579168 225579339 -17085014 - MER5B DNA MER1_type 0 178 5 342 323 10 10 chr1 225579344 225579440 -17084913 - MIR SINE MIR -61 147 52 1888 236 118 5 chr1 225579456 225580116 -17084237 - L1MEc LINE L1 -2222 3858 3124 1247 140 60 34 chr1 225580116 225580507 -17083846 - MLT2A2 LTR ERVL 0 453 125 1560 285 120 40 chr1 225580507 225581173 -17083180 - L1MEc LINE L1 -4130 2131 1520 2154 97 0 14 chr1 225581173 225581463 -17082890 + AluSg SINE Alu 1 286 -24 1560 285 120 40 chr1 225581463 225582239 -17082114 - L1MEc LINE L1 -4741 1520 573 210 91 0 0 chr1 225582298 225582331 -17082022 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2244 85 4 4 chr1 225582331 225582612 -17081741 - AluSq SINE Alu -32 281 1 668 278 148 47 chr1 225582704 225583197 -17081156 - L1MEc LINE L1 -5526 544 2 988 134 67 39 chr1 225583388 225583567 -17080786 - AluJb SINE Alu -1 311 128 218 205 0 0 chr1 225584621 225584660 -17079693 + MIR SINE MIR 202 240 -22 321 331 67 12 chr1 225585159 225585289 -17079064 - MIR SINE MIR -62 146 19 2487 99 0 0 chr1 225586047 225586360 -17077993 + AluSp SINE Alu 1 313 0 1865 135 3 39 chr1 225590758 225591070 -17073283 + AluJo SINE Alu 11 311 -1 322 189 0 68 chr1 225593010 225593084 -17071269 + L1MCa LINE L1 1995 2063 -4363 * 339 258 22 22 chr1 225593057 225593146 -17071207 + L1MC4 LINE L1 6895 6983 -1339 332 240 0 73 chr1 225593102 225593198 -17071155 - L1MC4 LINE L1 -1340 6702 6614 * 311 263 0 74 chr1 225593155 225593250 -17071103 + L1MC4 LINE L1 6614 6701 -1341 * 321 277 11 43 chr1 225593304 225593398 -17070955 + L1MC4 LINE L1 6615 6705 -1337 306 277 0 53 chr1 225593329 225593423 -17070930 - L1MC4 LINE L1 -1340 6702 6614 * 214 239 31 19 chr1 225593433 225593592 -17070761 + (TATATG)n Simple_repeat Simple_repeat 4 164 0 409 299 30 12 chr1 225596078 225596242 -17068111 + LTR33 LTR ERVL 1 167 -354 542 155 10 29 chr1 225596683 225596786 -17067567 + FLAM_A SINE Alu 30 130 -12 1346 210 41 30 chr1 225596788 225597083 -17067270 + AluJo SINE Alu 1 298 -14 180 0 0 0 chr1 225597083 225597103 -17067250 + (TA)n Simple_repeat Simple_repeat 2 21 0 2037 109 31 7 chr1 225597103 225597396 -17066957 + AluSp SINE Alu 1 300 -13 21 0 0 0 chr1 225597431 225597452 -17066901 + AT_rich Low_complexity Low_complexity 1 21 0 1663 83 0 14 chr1 225597464 225597680 -17066673 + AluY SINE Alu 99 311 0 2294 128 94 25 chr1 225597689 225598095 -17066258 + Tigger2a DNA MER2_type 1 434 0 2543 68 0 13 chr1 225598480 225598788 -17065565 + AluY SINE Alu 1 304 -7 2137 114 10 7 chr1 225599300 225599589 -17064764 - AluSq SINE Alu -23 290 1 4003 165 68 6 chr1 225600661 225601771 -17062582 + L1MB8 LINE L1 4979 6184 0 578 294 114 40 chr1 225601772 225602246 -17062107 + L1M4c LINE L1 2225 2738 -3644 463 290 89 34 chr1 225602341 225602861 -17061492 + L1M4c LINE L1 2912 3475 -2907 209 254 0 42 chr1 225602906 225602954 -17061399 + G-rich Low_complexity Low_complexity 1 47 -21 1748 154 7 43 chr1 225602954 225603253 -17061100 + AluJo SINE Alu 1 288 -24 209 254 0 42 chr1 225603253 225603275 -17061078 + G-rich Low_complexity Low_complexity 47 68 0 432 270 97 49 chr1 225603285 225603470 -17060883 + L1M4c LINE L1 3495 3688 -2694 267 295 66 62 chr1 225603560 225603865 -17060488 + L1M4c LINE L1 3862 4167 -2215 463 206 39 0 chr1 225604190 225604292 -17060061 - Tigger5 DNA MER2_type -2217 106 1 659 294 19 48 chr1 225605323 225605557 -17058796 - MIR SINE MIR 0 262 35 2449 74 0 0 chr1 225605557 225605854 -17058499 - AluY SINE Alu -14 297 1 659 294 19 48 chr1 225605854 225605888 -17058465 - MIR SINE MIR -227 35 2 875 233 35 0 chr1 225606842 225607044 -17057309 + MER3 DNA MER1_type 1 209 0 389 216 117 21 chr1 225607132 225607261 -17057092 - MIR SINE MIR -69 139 6 24 0 0 0 chr1 225607943 225607967 -17056386 + AT_rich Low_complexity Low_complexity 1 24 0 2409 80 0 0 chr1 225608715 225609004 -17055349 - AluY SINE Alu -22 289 1 755 130 116 0 chr1 225609004 225609046 -17055307 - Tigger2a DNA MER2_type -2554 154 118 195 42 0 0 chr1 225609046 225609070 -17055283 + (GGA)n Simple_repeat Simple_repeat 2 25 0 755 130 116 0 chr1 225609070 225609165 -17055188 - Tigger2a DNA MER2_type -2590 118 1 886 147 129 6 chr1 225609302 225609472 -17054881 - MER6B DNA MER2_type -19 191 1 975 152 25 13 chr1 225609666 225609824 -17054529 + AluJb SINE Alu 129 288 -24 441 272 80 8 chr1 225610116 225610241 -17054112 + L2 LINE L2 3179 3312 -1 795 264 47 64 chr1 225611704 225612019 -17052334 - L1ME4a LINE L1 -220 5901 5593 3861 143 41 6 chr1 225612019 225612730 -17051623 - L1MA8 LINE L1 0 6291 5556 795 264 47 64 chr1 225612730 225612838 -17051515 - L1ME4a LINE L1 -528 5593 5485 2027 202 94 59 chr1 225613060 225613319 -17051034 + MLT1E3 LTR MaLR 11 259 -365 2446 96 3 3 chr1 225613319 225613632 -17050721 - AluSq SINE Alu 0 313 1 2027 202 94 59 chr1 225613632 225613965 -17050388 + MLT1E3 LTR MaLR 259 624 0 188 176 20 39 chr1 225614156 225614207 -17050146 - L3 LINE CR1 -690 887 838 834 192 0 0 chr1 225616187 225616687 -17047666 + (TG)n Simple_repeat Simple_repeat 1 500 0 702 187 0 0 chr1 225616698 225617061 -17047292 + (TG)n Simple_repeat Simple_repeat 1 363 0 342 159 51 14 chr1 225620077 225620215 -17044138 + (TG)n Simple_repeat Simple_repeat 1 143 0 1221 172 10 5 chr1 225620320 225620518 -17043835 - AluJb SINE Alu -107 205 7 393 106 0 45 chr1 225620530 225620596 -17043757 + Tigger5 DNA MER2_type 2261 2323 0 190 29 57 29 chr1 225621211 225621246 -17043107 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 249 250 0 0 chr1 225621382 225621446 -17042907 - MLT2D LTR ERVL 0 414 351 711 218 55 6 chr1 225621484 225621649 -17042704 - MLT2D LTR ERVL -50 364 192 1462 87 0 0 chr1 225621651 225621836 -17042517 - AluSq SINE Alu 0 313 129 201 375 59 0 chr1 225622402 225622538 -17041815 - MIR3 SINE MIR -7 201 58 1746 190 3 22 chr1 225623431 225623742 -17040611 + AluJb SINE Alu 1 305 -7 296 247 0 49 chr1 225623772 225623853 -17040500 + L2 LINE L2 3196 3272 0 413 303 58 62 chr1 225625316 225625557 -17038796 + MIR SINE MIR 23 262 0 493 354 86 3 chr1 225625606 225625908 -17038445 - L3 LINE CR1 -88 1489 1163 921 189 70 15 chr1 225626288 225626489 -17037864 + MER58A DNA MER1_type 3 214 -10 259 228 337 0 chr1 225626494 225626586 -17037767 - MER5A DNA MER1_type -25 164 42 333 313 6 39 chr1 225627041 225627220 -17037133 + C-rich Low_complexity Low_complexity 4 176 0 * 383 282 20 36 chr1 225627135 225627439 -17036914 + CT-rich Low_complexity Low_complexity 1 298 0 330 328 22 22 chr1 225627540 225627720 -17036633 + C-rich Low_complexity Low_complexity 1 180 0 2070 148 38 0 chr1 225629445 225629818 -17034535 - MLT1B LTR MaLR -3 387 1 576 232 51 11 chr1 225630366 225630543 -17033810 + MER53 DNA DNA 6 189 0 783 286 100 44 chr1 225631070 225631797 -17032556 + L2 LINE L2 2491 3298 -15 859 181 38 0 chr1 225631946 225632106 -17032247 + FAM SINE Alu 1 166 -9 182 295 51 26 chr1 225632115 225632193 -17032160 - MIR SINE MIR -73 189 110 1292 141 0 175 chr1 225633680 225634035 -17030318 - AluJo SINE Alu -9 293 1 247 308 0 9 chr1 225637853 225637960 -17026393 + (TA)n Simple_repeat Simple_repeat 2 107 0 327 182 45 0 chr1 225638016 225638082 -17026271 - L1MCa LINE L1 -4362 2064 1996 347 289 0 52 chr1 225638087 225638184 -17026169 + L1MC4 LINE L1 6614 6705 -1337 306 360 49 18 chr1 225638091 225638255 -17026098 - L1MC4 LINE L1 -1339 6703 6535 * 2029 151 12 15 chr1 225638682 225639020 -17025333 + MER7A DNA MER2_type 11 345 -1 2210 103 13 7 chr1 225639149 225639451 -17024902 - AluSx SINE Alu -8 304 1 317 367 33 57 chr1 225639594 225639804 -17024549 + MIR SINE MIR 23 227 -35 201 74 0 0 chr1 225640456 225640483 -17023870 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 2001 108 55 19 chr1 225640506 225640868 -17023485 + THE1C LTR MaLR 1 375 0 256 264 118 28 chr1 225640961 225641105 -17023248 - MIR SINE MIR -46 216 60 229 292 36 80 chr1 225641908 225642158 -17022195 - L2 LINE L2 -185 3087 2849 182 337 133 0 chr1 225643141 225643224 -17021129 + MIR SINE MIR 96 189 -73 2399 95 0 0 chr1 225643391 225643686 -17020667 + AluSx SINE Alu 1 295 -17 2188 123 3 0 chr1 225644831 225645124 -17019229 + AluSx SINE Alu 1 294 -18 2378 95 0 0 chr1 225645124 225645420 -17018933 + AluY SINE Alu 1 296 -15 458 310 58 12 chr1 225646693 225646864 -17017489 + MIR SINE MIR 72 250 -12 1817 158 27 10 chr1 225647511 225647809 -17016544 + AluJo SINE Alu 1 303 -9 224 246 33 0 chr1 225648543 225648604 -17015749 + L2 LINE L2 3223 3285 -28 632 231 26 106 chr1 225650540 225650813 -17013540 - MIR SINE MIR -6 256 6 258 277 96 0 chr1 225651836 225651919 -17012434 - MIR SINE MIR -121 141 51 294 256 183 7 chr1 225653393 225653530 -17010823 + MER117 DNA MER1_type 1 161 -36 1609 173 57 14 chr1 225653780 225654063 -17010290 - AluJo SINE Alu -17 295 1 295 320 102 36 chr1 225654073 225654218 -17010135 + L1ME4a LINE L1 5713 5847 -274 2274 117 0 0 chr1 225654218 225654517 -17009836 + AluSg SINE Alu 1 299 -11 295 320 102 36 chr1 225654517 225654755 -17009598 + L1ME4a LINE L1 5847 6121 0 211 275 100 12 chr1 225654824 225654904 -17009449 + MIR3 SINE MIR 116 202 -6 243 0 0 0 chr1 225655734 225655761 -17008592 + (T)n Simple_repeat Simple_repeat 1 27 0 239 0 32 0 chr1 225655890 225655921 -17008432 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 345 200 15 0 chr1 225656817 225656882 -17007471 + MIR3 SINE MIR 120 185 -23 279 350 75 6 chr1 225656913 225657073 -17007280 + MIR SINE MIR 92 262 0 462 310 14 0 chr1 225657725 225657867 -17006486 + MIR SINE MIR 89 232 -30 209 228 102 87 chr1 225658872 225658999 -17005354 - MIR SINE MIR -50 212 84 575 234 143 39 chr1 225659840 225660071 -17004282 - MIR SINE MIR -6 256 2 307 276 113 47 chr1 225661171 225661345 -17003008 - MIR SINE MIR -63 145 1 410 300 9 0 chr1 225662625 225662735 -17001618 + MER81 DNA DNA 1 111 -3 1071 129 11 0 chr1 225662788 225662966 -17001387 - LTR29 LTR ERV1 -59 563 384 243 88 0 0 chr1 225663130 225663164 -17001189 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1658 167 32 25 chr1 225663168 225663450 -17000903 - AluJb SINE Alu -27 285 2 1763 135 16 71 chr1 225663451 225663762 -17000591 - AluJo SINE Alu -13 299 6 227 215 84 75 chr1 225664487 225664594 -16999759 + MIR SINE MIR 28 135 -127 255 261 106 21 chr1 225664668 225664789 -16999564 - MIR SINE MIR -62 146 34 197 139 28 0 chr1 225664803 225664839 -16999514 + MIR SINE MIR 111 147 -115 255 198 132 28 chr1 225665668 225665774 -16998579 - L1ME4a LINE L1 -31 6090 5974 470 217 198 13 chr1 225665919 225666076 -16998277 + MER5A DNA MER1_type 4 189 0 1925 141 29 0 chr1 225666140 225666416 -16997937 + AluJo SINE Alu 13 296 -16 259 294 116 33 chr1 225666579 225666854 -16997499 - L1ME LINE L1 -559 5562 5265 2611 60 0 0 chr1 225668499 225668798 -16995555 - AluY SINE Alu -12 299 1 2432 88 3 0 chr1 225669249 225669556 -16994797 - AluSq SINE Alu -5 308 1 312 218 32 37 chr1 225670010 225670129 -16994224 - MIR SINE MIR -59 149 45 443 283 24 44 chr1 225670389 225670594 -16993759 + MER90 LTR ERV1 396 596 -18 2037 148 20 0 chr1 225670827 225671125 -16993228 - AluSx SINE Alu -8 304 1 224 319 0 0 chr1 225673019 225673091 -16991262 + GA-rich Low_complexity Low_complexity 2 73 0 317 265 0 39 chr1 225673109 225673290 -16991063 + G-rich Low_complexity Low_complexity 1 174 0 196 202 21 32 chr1 225673307 225673401 -16990952 + GA-rich Low_complexity Low_complexity 3 95 0 2439 48 41 0 chr1 225673643 225673935 -16990418 + AluY SINE Alu 1 304 -7 359 259 0 88 chr1 225674656 225674849 -16989504 + C-rich Low_complexity Low_complexity 4 179 0 383 265 15 31 chr1 225674872 225675140 -16989213 + CT-rich Low_complexity Low_complexity 1 263 0 311 245 7 39 chr1 225675146 225675583 -16988770 + C-rich Low_complexity Low_complexity 1 422 0 473 158 11 11 chr1 225675734 225675905 -16988448 + FLAM_A SINE Alu 39 209 0 2069 139 3 13 chr1 225676047 225676357 -16987996 - AluJo SINE Alu -5 307 1 557 271 94 10 chr1 225676975 225677178 -16987175 - L1ME LINE L1 -313 5808 5589 322 312 168 67 chr1 225677320 225677797 -16986556 - L1ME LINE L1 -744 5402 4878 1123 128 0 0 chr1 225677812 225677961 -16986392 + AluSg/x SINE Alu 135 283 -27 1566 141 21 113 chr1 225678224 225678551 -16985802 + AluJb SINE Alu 1 297 -15 1427 197 3 55 chr1 225680714 225681023 -16983330 + AluJo SINE Alu 1 293 -19 2214 131 0 3 chr1 225681040 225681353 -16983000 - AluSq SINE Alu -1 312 1 748 131 0 0 chr1 225681362 225681484 -16982869 - L1MA5A LINE L1 -3 6294 6173 315 193 12 15 chr1 225681484 225681559 -16982794 + L1MA5A LINE L1 6016 6095 -205 260 226 0 0 chr1 225683018 225683071 -16981282 - L2 LINE L2 -4 3309 3257 22 0 0 0 chr1 225684738 225684760 -16979593 + AT_rich Low_complexity Low_complexity 1 22 0 1490 121 156 0 chr1 225685886 225686142 -16978211 + AluJb SINE Alu 1 296 -6 2245 93 3 39 chr1 225687329 225687641 -16976712 + AluSg SINE Alu 1 301 -9 185 206 0 0 chr1 225690234 225690268 -16974085 - L2 LINE L2 -32 3240 3207 278 300 0 0 chr1 225691250 225691340 -16973013 + L1MC4 LINE L1 6614 6703 -1339 224 265 0 0 chr1 225691341 225691390 -16972963 + (TA)n Simple_repeat Simple_repeat 2 50 0 235 261 45 0 chr1 225691390 225691478 -16972875 - L1MC4 LINE L1 -1337 6705 6614 233 292 0 0 chr1 225691504 225691593 -16972760 - L1MC4 LINE L1 -1339 6703 6615 366 300 0 11 chr1 225691628 225691718 -16972635 - L1MC4 LINE L1 -1339 6703 6615 277 316 119 36 chr1 225691849 225692210 -16972143 + L3 LINE CR1 1054 1444 -133 198 0 0 0 chr1 225692862 225692884 -16971469 + (A)n Simple_repeat Simple_repeat 1 22 0 846 146 0 0 chr1 225693741 225693864 -16970489 + FLAM_C SINE Alu 1 123 -20 200 246 0 15 chr1 225694187 225694252 -16970101 + CT-rich Low_complexity Low_complexity 1 64 0 1528 149 4 69 chr1 225694590 225694730 -16969623 + AluJo SINE Alu 5 120 -192 2388 108 0 0 chr1 225694730 225695035 -16969318 + AluSx SINE Alu 1 305 -7 1528 149 4 69 chr1 225695035 225695169 -16969184 + AluJo SINE Alu 120 261 -51 180 77 0 0 chr1 225695226 225695252 -16969101 + (CAA)n Simple_repeat Simple_repeat 2 27 0 291 303 109 0 chr1 225695379 225695498 -16968855 - L2 LINE L2 -2 3270 3139 742 174 0 34 chr1 225695878 225696027 -16968326 + FRAM SINE Alu 25 168 -8 34 24 0 0 chr1 225696463 225696504 -16967849 + AT_rich Low_complexity Low_complexity 1 41 0 293 336 120 0 chr1 225696755 225696880 -16967473 - L2 LINE L2 -3 3310 3171 319 232 144 40 chr1 225696955 225697080 -16967273 - L2 LINE L2 -9 3304 3167 2040 108 6 73 chr1 225697093 225697409 -16966944 - AluSq SINE Alu -18 295 1 207 304 44 44 chr1 225698599 225698734 -16965619 + MIR SINE MIR 47 181 -81 206 118 0 0 chr1 225700617 225700651 -16963702 + (T)n Simple_repeat Simple_repeat 1 34 0 2493 75 7 0 chr1 225700661 225700967 -16963386 + AluY SINE Alu 1 308 -3 2141 151 19 58 chr1 225701151 225701347 -16963006 + MSTB LTR MaLR 1 203 -223 2236 117 0 0 chr1 225701347 225701638 -16962715 + AluSx SINE Alu 1 291 -21 1855 172 0 13 chr1 225701646 225701954 -16962399 + AluSx SINE Alu 1 304 -8 2141 151 19 58 chr1 225701954 225702178 -16962175 + MSTB LTR MaLR 210 413 -13 867 81 0 0 chr1 225702407 225702518 -16961835 - AluSc SINE Alu -8 301 191 360 263 17 25 chr1 225702533 225702651 -16961702 - L1MD2 LINE L1 -219 6140 6024 3518 202 50 17 chr1 225702768 225703545 -16960808 - L1MB7 LINE L1 -2 6182 5380 519 196 125 0 chr1 225703572 225703684 -16960669 + FLAM_A SINE Alu 1 126 -7 281 254 239 0 chr1 225704015 225704149 -16960204 + L3 LINE CR1 1252 1417 -160 975 253 7 62 chr1 225704438 225704711 -16959642 - MIR SINE MIR 0 262 5 281 241 278 15 chr1 225705020 225705153 -16959200 + L3 LINE CR1 1250 1417 -160 2232 95 27 3 chr1 225705472 225705766 -16958587 + AluSx SINE Alu 1 301 -11 1518 216 39 68 chr1 225706994 225707512 -16956841 + MLT1D LTR MaLR 1 503 -2 7914 23 2 2 chr1 225708318 225710021 -16954332 - L1PA3 LINE L1 0 6155 4453 7110 20 0 1 chr1 225710021 225710880 -16953473 + L1PA3 LINE L1 3586 4443 -1703 640 221 81 123 chr1 225711061 225711229 -16953124 - MLT1D LTR MaLR -138 367 193 1709 176 0 30 chr1 225711229 225711531 -16952822 - AluJb SINE Alu -19 293 1 640 221 81 123 chr1 225711531 225711679 -16952674 - MLT1D LTR MaLR -312 193 67 3863 157 23 11 chr1 225711679 225712342 -16952011 + LTR51 LTR ERV1 1 671 0 640 221 81 123 chr1 225712342 225712405 -16951948 - MLT1D LTR MaLR -438 67 3 1193 168 41 132 chr1 225712407 225712801 -16951552 - MLT1D-int LTR MaLR 0 1371 1014 292 180 0 0 chr1 225713333 225713383 -16950970 - Charlie1 DNA MER1_type -34 2727 2678 1421 148 105 23 chr1 225713475 225713732 -16950621 + AluJo SINE Alu 1 278 -34 275 314 32 1 chr1 225713833 225713951 -16950402 + MIR SINE MIR 50 171 -58 22 0 0 0 chr1 225714364 225714386 -16949967 + AT_rich Low_complexity Low_complexity 1 22 0 244 256 139 0 chr1 225716631 225716717 -16947636 - MIR SINE MIR -130 132 35 192 97 0 0 chr1 225717549 225717580 -16946773 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2374 98 3 3 chr1 225719361 225719668 -16944685 - AluSx SINE Alu -5 307 1 2202 131 65 5 chr1 225720069 225720467 -16943886 - L1MA5A LINE L1 -4 6293 5872 295 135 0 19 chr1 225720474 225720526 -16943827 + L1MA5A LINE L1 5796 5846 -451 867 279 132 8 chr1 225721946 225722301 -16942052 + L1MD2 LINE L1 5742 6140 -219 1414 168 139 83 chr1 225722383 225722677 -16941676 - MSTD LTR MaLR 0 396 75 2185 108 7 30 chr1 225722677 225722982 -16941371 + AluSx SINE Alu 1 298 -14 1414 168 139 83 chr1 225722982 225723062 -16941291 - MSTD LTR MaLR -321 75 1 447 280 120 82 chr1 225723233 225723888 -16940465 - L2 LINE L2 -45 3268 2571 1849 146 84 3 chr1 225723888 225724210 -16940143 + MER7A DNA MER2_type 1 346 0 447 280 120 82 chr1 225724210 225724419 -16939934 - L2 LINE L2 -742 2571 2372 2377 92 0 0 chr1 225724443 225724735 -16939618 - AluSx SINE Alu -20 292 1 2178 117 17 0 chr1 225724745 225725045 -16939308 - AluSp SINE Alu -8 305 1 230 253 91 71 chr1 225725563 225725662 -16938691 + MIR3 SINE MIR 81 181 -27 1446 150 26 31 chr1 225725688 225725946 -16938407 - Tigger4(Zombi) DNA MER2_type 0 2731 2473 2262 205 73 46 chr1 225725946 225726618 -16937735 - LTR8 LTR ERV1 0 691 2 1446 150 26 31 chr1 225726618 225726689 -16937664 - Tigger4(Zombi) DNA MER2_type -258 2473 1 23 33 0 0 chr1 225726700 225726730 -16937623 + AT_rich Low_complexity Low_complexity 1 30 0 188 294 88 59 chr1 225726765 225726867 -16937486 + L2 LINE L2 3168 3272 0 194 352 56 49 chr1 225727041 225727203 -16937150 - MIR3 SINE MIR -7 201 39 390 248 40 32 chr1 225727616 225727741 -16936612 - L1ME LINE L1 -392 5729 5604 2153 96 14 14 chr1 225728251 225728543 -16935810 + AluSc SINE Alu 1 292 -17 345 333 139 23 chr1 225731086 225731302 -16933051 - MIR SINE MIR -2 260 20 189 0 0 0 chr1 225731494 225731515 -16932838 + (A)n Simple_repeat Simple_repeat 1 21 0 2062 118 3 11 chr1 225732432 225732747 -16931606 + AluSq SINE Alu 2 314 0 261 0 0 0 chr1 225733511 225733540 -16930813 + (CA)n Simple_repeat Simple_repeat 2 30 0 222 325 75 33 chr1 225733735 225733855 -16930498 - L2 LINE L2 -9 3263 3139 271 102 0 0 chr1 225735661 225735710 -16928643 - Alu SINE Alu 0 300 252 2331 101 0 0 chr1 225735710 225736007 -16928346 - AluSx SINE Alu -15 297 1 417 244 43 26 chr1 225736009 225736124 -16928229 - MER5B DNA MER1_type -35 143 27 1686 195 0 16 chr1 225736134 225736437 -16927916 + AluJo SINE Alu 1 298 -14 1557 78 0 5 chr1 225736441 225736632 -16927721 + AluSg SINE Alu 1 190 -120 206 304 124 48 chr1 225737679 225737854 -16926499 + MIR3 SINE MIR 3 190 -63 531 286 130 51 chr1 225737858 225738228 -16926125 - L2 LINE L2 -88 3225 2827 202 259 56 0 chr1 225738417 225738471 -16925882 - MIR SINE MIR -116 146 90 2315 90 0 23 chr1 225739548 225739858 -16924495 + AluSg SINE Alu 1 303 -7 625 278 82 5 chr1 225740011 225740205 -16924148 + MER3 DNA MER1_type 1 209 0 1857 248 139 24 chr1 225740991 225741694 -16922659 - MER21B LTR ERV1 -60 803 20 288 244 93 23 chr1 225741715 225741801 -16922552 - MER21B LTR ERV1 -771 92 1 358 252 130 15 chr1 225741976 225742107 -16922246 + MER103 DNA DNA 19 164 -2 318 106 0 0 chr1 225742370 225742417 -16921936 + (GTTTG)n Simple_repeat Simple_repeat 5 51 0 1664 164 7 28 chr1 225742417 225742704 -16921649 - AluJo SINE Alu -31 281 1 228 333 25 0 chr1 225742842 225742923 -16921430 + L2 LINE L2 3121 3203 -110 198 118 0 0 chr1 225742975 225743009 -16921344 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 463 214 244 0 chr1 225743344 225743475 -16920878 + MIR SINE MIR 99 261 -1 337 188 21 94 chr1 225744558 225744654 -16919699 - L1MC4 LINE L1 -1339 6703 6615 323 272 10 48 chr1 225744662 225744765 -16919588 - L1MC4 LINE L1 -1339 6703 6605 4438 246 27 26 chr1 225944769 225946473 -16717880 - L1PA12 LINE L1 -3674 3910 2182 2204 104 3 3 chr1 225946567 225946875 -16717478 - AluSx SINE Alu -4 308 1 363 289 22 0 chr1 225947019 225947109 -16717244 - L1PA12 LINE L1 -5408 2173 2082 685 242 6 0 chr1 225947246 225947403 -16716950 - L1MA9 LINE L1 -271 6041 5884 610 101 18 46 chr1 225947405 225947514 -16716839 + L1M2 LINE L1 5408 5513 -799 1047 195 0 63 chr1 225947514 225947607 -16716746 + MLT1C LTR MaLR 261 358 -109 2097 108 3 0 chr1 225947607 225947903 -16716450 + AluY SINE Alu 1 297 -14 1047 195 0 63 chr1 225947903 225948030 -16716323 + MLT1C LTR MaLR 358 467 0 912 118 0 118 chr1 225948450 225948637 -16715716 - L1PA10 LINE L1 -125 6043 5879 * 2675 228 28 8 chr1 225948635 225949338 -16715015 - L1P LINE L1 -815 5331 4615 1069 170 153 30 chr1 225949359 225949659 -16714694 - LTR54B LTR ERV1 -161 337 1 252 276 207 0 chr1 225949673 225949760 -16714593 + Charlie2a DNA MER1_type 370 474 -2388 * 477 247 56 40 chr1 225949758 225950139 -16714214 + Charlie2a DNA MER1_type 733 2851 -11 789 161 112 0 chr1 225950347 225950490 -16713863 - MER20 DNA MER1_type 0 219 61 537 167 23 61 chr1 225950603 225950735 -16713618 - LTR5 LTR ERVK -842 127 1 2657 84 14 22 chr1 225950824 225951183 -16713170 - THE1B LTR MaLR -8 356 1 275 54 0 0 chr1 225951648 225951685 -16712668 - LTR24B LTR ERV1 -539 37 1 187 343 43 14 chr1 225951779 225951849 -16712504 + L2 LINE L2 3195 3266 -47 249 288 0 0 chr1 225951973 225952039 -16712314 - MIR SINE MIR -99 109 44 27 0 0 0 chr1 225952088 225952115 -16712238 + AT_rich Low_complexity Low_complexity 1 27 0 574 154 0 0 chr1 225952120 225952211 -16712142 - FRAM SINE Alu -22 154 64 311 302 27 81 chr1 225953994 225954143 -16710210 + MIR SINE MIR 72 212 -50 389 325 0 0 chr1 225954192 225954312 -16710041 + MIR SINE MIR 2 121 -141 232 341 116 8 chr1 225954331 225954460 -16709893 - L2 LINE L2 -8 3305 3163 239 344 22 61 chr1 225955909 225956089 -16708264 + MER5B DNA MER1_type 1 173 -5 258 281 62 0 chr1 225956140 225956236 -16708117 + MER5B DNA MER1_type 3 104 -74 2124 131 9 90 chr1 225956318 225956739 -16707614 - MLT1B LTR MaLR 0 390 4 364 309 36 15 chr1 225957989 225958187 -16706166 - MIR SINE MIR -25 237 28 1000 176 0 0 chr1 225958339 225958504 -16705849 - FRAM SINE Alu -1 165 1 203 347 58 33 chr1 225958520 225958641 -16705712 - L2 LINE L2 -3 3269 3146 1375 203 11 0 chr1 225960942 225961208 -16703145 + L1MC1 LINE L1 6063 6331 -2 893 177 10 34 chr1 225962510 225962933 -16701420 - L1MB3 LINE L1 -7 6176 5664 338 237 41 21 chr1 225966203 225966300 -16698053 + MER5A DNA MER1_type 14 112 -77 351 0 0 0 chr1 225966600 225966639 -16697714 + (CA)n Simple_repeat Simple_repeat 2 40 0 709 265 59 40 chr1 225966856 225967109 -16697244 + MER46C DNA MER2_type 81 338 0 3127 127 88 19 chr1 225967131 225967707 -16696646 - L1MC1 LINE L1 0 6333 5718 28 61 0 0 chr1 225968207 225968256 -16696097 + AT_rich Low_complexity Low_complexity 1 49 0 403 261 112 80 chr1 225968271 225968520 -16695833 - L1MC4a LINE L1 -1914 5894 5638 560 309 155 12 chr1 225968652 225968988 -16695365 + LTR16C LTR ERVL 87 470 -21 2235 165 163 9 chr1 225969115 225969563 -16694790 + MLT2B1 LTR ERVL 4 520 0 22 0 0 0 chr1 225970639 225970661 -16693692 + AT_rich Low_complexity Low_complexity 1 22 0 750 154 0 0 chr1 225971032 225971149 -16693204 - FRAM SINE Alu -13 163 47 2102 96 31 0 chr1 225971249 225971541 -16692812 + AluSp SINE Alu 1 301 -12 1262 159 9 5 chr1 225972684 225972904 -16691449 + AluJb SINE Alu 90 310 -2 2779 126 112 2 chr1 225973180 225973616 -16690737 - MER1A DNA MER1_type 0 529 46 1029 311 133 58 chr1 225973685 225974704 -16689649 + L2 LINE L2 1611 2706 -608 617 144 0 0 chr1 225974874 225974964 -16689389 + Tigger7 DNA MER2_type 2393 2482 -9 376 303 113 10 chr1 225975058 225975239 -16689114 + MIR3 SINE MIR 15 205 -3 1034 140 68 48 chr1 225975252 225975459 -16688894 + MER2 DNA MER2_type 1 211 -134 28 0 0 0 chr1 225975469 225975497 -16688856 + AT_rich Low_complexity Low_complexity 1 28 0 388 239 92 9 chr1 225975571 225975680 -16688673 - MIR SINE MIR -58 150 33 395 271 93 20 chr1 225976664 225976815 -16687538 + MER5B DNA MER1_type 1 162 -16 397 234 241 21 chr1 225976937 225977082 -16687271 + MER5A DNA MER1_type 13 189 0 459 157 130 17 chr1 225977114 225977229 -16687124 - MER5B DNA MER1_type -50 128 1 3069 120 37 8 chr1 225977545 225978028 -16686325 + MER34 LTR ERV1 1 497 -45 219 36 0 0 chr1 225978030 225978058 -16686295 + (CAA)n Simple_repeat Simple_repeat 2 29 0 908 152 0 0 chr1 225978331 225978476 -16685877 + FRAM SINE Alu 2 146 -30 552 288 162 14 chr1 225978706 225978928 -16685425 + MIR SINE MIR 8 262 0 344 238 181 19 chr1 225978937 225979042 -16685311 - MIR SINE MIR -108 154 33 893 143 0 6 chr1 225979114 225979275 -16685078 + (TCC)n Simple_repeat Simple_repeat 2 161 0 2063 108 7 3 chr1 225979586 225979891 -16684462 - AluSc SINE Alu -3 306 1 1624 180 16 0 chr1 225979891 225980197 -16684156 - AluJo SINE Alu -1 311 1 346 175 167 33 chr1 225980392 225980512 -16683841 + MLT1K LTR MaLR 445 580 -8 609 304 93 56 chr1 225980513 225980783 -16683570 - L3 LINE CR1 -893 684 405 2840 158 0 6 chr1 225981050 225981518 -16682835 + MER4C LTR ERV1 1 465 0 537 195 188 26 chr1 225981640 225981794 -16682559 + MER5A DNA MER1_type 9 187 -2 1551 80 20 28 chr1 225982146 225982339 -16682014 - L1MA3 LINE L1 -32 6273 6081 2091 130 0 3 chr1 225982339 225982646 -16681707 - AluSx SINE Alu -5 307 2 1551 80 20 28 chr1 225982646 225982701 -16681652 - L1MA3 LINE L1 -224 6081 6027 409 259 139 70 chr1 225982779 225983038 -16681315 - HAL1 LINE L1 -254 2253 1977 479 304 49 18 chr1 225983075 225983299 -16681054 - HAL1 LINE L1 -475 2032 1802 309 263 198 35 chr1 225983306 225983538 -16680815 - LTR41 LTR ERVL -6 767 498 15242 78 14 1 chr1 225983887 225985953 -16678400 + L1P LINE L1 3203 5294 -852 402 229 95 0 chr1 225985953 225986058 -16678295 + MSTD LTR MaLR 39 153 -243 804 180 45 9 chr1 225986174 225986379 -16677974 + MSTD LTR MaLR 209 417 -11 1988 134 0 10 chr1 225986499 225986812 -16677541 + AluSx SINE Alu 1 310 -2 1540 159 64 36 chr1 225986813 225987172 -16677181 + L1MA9 LINE L1 5939 6307 -5 4957 141 47 48 chr1 225987207 225988171 -16676182 + L1MC2 LINE L1 5373 6335 -9 5159 153 29 6 chr1 225989089 225990299 -16674054 + L1PB4 LINE L1 4922 6156 0 243 88 0 0 chr1 225990981 225991015 -16673338 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr1 225991055 225991077 -16673276 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 225991250 225991271 -16673082 + AT_rich Low_complexity Low_complexity 1 21 0 1804 140 7 3 chr1 225991414 225991700 -16672653 + AluSx SINE Alu 1 287 -25 537 167 61 106 chr1 225992883 225993015 -16671338 + MER21B LTR ERV1 681 806 -57 261 266 124 40 chr1 225993054 225993231 -16671122 + L1MEc LINE L1 1738 1892 -4534 339 154 28 196 chr1 225993280 225993423 -16670930 + MLT2F LTR ERVL 543 661 -2 392 301 102 16 chr1 225993760 225993946 -16670407 - MIR SINE MIR -38 224 23 815 158 0 8 chr1 225994065 225994192 -16670161 - FLAM_C SINE Alu -7 126 1 374 343 76 76 chr1 225995201 225995478 -16668875 - L2 LINE L2 0 3272 2996 194 277 96 12 chr1 225995510 225995593 -16668760 - L2 LINE L2 -1360 1954 1865 2083 101 3 0 chr1 225995971 225996257 -16668096 - AluSx SINE Alu -8 304 18 313 240 270 0 chr1 225996439 225996539 -16667814 + MIR SINE MIR 27 153 -109 834 278 169 23 chr1 225996692 225997254 -16667099 + MLT2F LTR ERVL 1 644 -19 299 150 17 0 chr1 225999238 225999298 -16665055 + (CA)n Simple_repeat Simple_repeat 2 62 0 223 209 15 45 chr1 225999377 225999444 -16664909 + CT-rich Low_complexity Low_complexity 4 68 0 314 265 15 0 chr1 226000796 226000864 -16663489 - L1MCa LINE L1 -4352 2074 2006 23 0 0 0 chr1 226001296 226001319 -16663034 + AT_rich Low_complexity Low_complexity 1 23 0 473 272 52 9 chr1 226001493 226001662 -16662691 - L1ME3A LINE L1 -31 6139 5973 304 165 0 139 chr1 226001680 226001759 -16662594 - MLT1H LTR MaLR -2 547 480 421 237 35 0 chr1 226001907 226002021 -16662332 - L1ME3A LINE L1 -191 5979 5862 2141 219 51 11 chr1 226002032 226002599 -16661754 - MER63 DNA MER1_type 0 1060 471 2035 97 50 0 chr1 226002650 226002948 -16661405 - AluSq SINE Alu 0 313 1 197 344 16 0 chr1 226003053 226003117 -16661236 - L2 LINE L2 0 3272 3208 1751 145 7 27 chr1 226003118 226003414 -16660939 + MER49 LTR ERV1 1 290 -633 1413 204 4 15 chr1 226003496 226003761 -16660592 + MER4D LTR ERV1 555 816 -87 270 355 75 5 chr1 226003770 226003956 -16660397 - L2 LINE L2 -397 2917 2719 290 266 53 32 chr1 226004122 226004216 -16660137 + MER5B DNA MER1_type 4 99 -79 587 266 40 50 chr1 226004397 226004675 -16659678 + L1ME LINE L1 5386 5660 -510 400 92 46 0 chr1 226004778 226004843 -16659510 - Alu SINE Alu -242 69 2 26 64 0 0 chr1 226005244 226005291 -16659062 + AT_rich Low_complexity Low_complexity 1 47 0 325 251 145 22 chr1 226005599 226005778 -16658575 + LTR33 LTR ERVL 315 515 -6 243 0 0 0 chr1 226005996 226006023 -16658330 + (TG)n Simple_repeat Simple_repeat 2 28 0 2247 76 14 0 chr1 226006074 226006363 -16657990 + AluY SINE Alu 1 293 -18 1988 133 0 0 chr1 226007139 226007444 -16656909 - AluSq SINE Alu 0 305 1 2499 154 93 18 chr1 226007545 226008059 -16656294 - L1MB8 LINE L1 -1 6177 5625 1178 216 84 17 chr1 226008189 226008486 -16655867 + MER31B LTR ERV1 110 426 -40 1978 120 7 0 chr1 226008487 226008771 -16655582 + AluSx SINE Alu 1 286 -26 2025 109 0 43 chr1 226008792 226009095 -16655258 + AluSx SINE Alu 1 290 -22 1803 223 99 9 chr1 226009128 226009550 -16654803 + MER82 DNA MER2_type 194 653 0 189 171 0 0 chr1 226010204 226010239 -16654114 + T-rich Low_complexity Low_complexity 1 35 0 1273 239 15 52 chr1 226010353 226010620 -16653733 + MLT1A2 LTR MaLR 45 298 -76 1805 159 30 0 chr1 226010620 226010916 -16653437 - AluSx SINE Alu 0 312 8 1273 239 15 52 chr1 226010916 226010991 -16653362 + MLT1A2 LTR MaLR 298 374 0 715 203 8 0 chr1 226011011 226011139 -16653214 + MER3 DNA MER1_type 1 129 -80 2371 65 0 3 chr1 226011139 226011445 -16652908 - AluY SINE Alu -6 305 1 1746 152 3 3 chr1 226011447 226011737 -16652616 - AluJo SINE Alu -16 296 7 1657 237 39 5 chr1 226012462 226012896 -16651457 + L1MD3 LINE L1 7547 7995 0 2010 124 3 6 chr1 226012937 226013251 -16651102 - AluSq SINE Alu 0 313 1 22 70 0 0 chr1 226013253 226013296 -16651057 + AT_rich Low_complexity Low_complexity 1 43 0 188 224 41 20 chr1 226016432 226016481 -16647872 + MER5A DNA MER1_type 27 76 -113 308 220 22 0 chr1 226016499 226016590 -16647763 + GA-rich Low_complexity Low_complexity 1 93 0 1043 76 29 6 chr1 226016594 226016765 -16647588 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 215 31 31 0 chr1 226016931 226016963 -16647390 + (AGGGGG)n Simple_repeat Simple_repeat 3 35 0 204 187 67 13 chr1 226019155 226019230 -16645123 + (CTGGGG)n Simple_repeat Simple_repeat 5 83 0 204 245 43 11 chr1 226019408 226019502 -16644851 + (TA)n Simple_repeat Simple_repeat 1 97 0 1630 160 0 34 chr1 226019603 226019897 -16644456 + AluJo SINE Alu 3 286 -26 592 246 168 16 chr1 226020806 226020997 -16643356 - MIR SINE MIR -34 228 9 198 0 0 0 chr1 226021384 226021406 -16642947 + (GA)n Simple_repeat Simple_repeat 1 22 0 288 196 56 9 chr1 226021411 226021632 -16642721 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 542 185 0 0 chr1 226021636 226021728 -16642625 - MER8 DNA MER2_type 0 239 148 1468 180 33 25 chr1 226021843 226022177 -16642176 + LTR56 LTR ERV1 127 437 0 373 302 64 73 chr1 226022218 226022503 -16641850 + L2 LINE L2 2623 2907 -407 2012 128 0 3 chr1 226022503 226022818 -16641535 + AluSx SINE Alu 1 314 0 373 302 64 73 chr1 226022818 226022875 -16641478 + L2 LINE L2 2907 2963 -351 231 36 0 0 chr1 226023075 226023103 -16641250 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 695 214 0 0 chr1 226023103 226023219 -16641134 - FLAM_C SINE Alu -192 120 2 212 254 48 16 chr1 226023238 226023301 -16641052 + L2 LINE L2 3224 3288 -25 2385 166 14 30 chr1 226023371 226023810 -16640543 - Tigger2a DNA MER2_type 0 434 3 2148 109 0 3 chr1 226023920 226024223 -16640130 + AluSp SINE Alu 2 303 -10 547 121 24 0 chr1 226024551 226024634 -16639719 + AluY SINE Alu 206 290 -21 1737 114 0 4 chr1 226025034 226025296 -16639057 + AluSg SINE Alu 7 267 -43 180 337 60 12 chr1 226025359 226025442 -16638911 - L3 LINE CR1 -603 974 888 227 200 81 0 chr1 226025598 226025689 -16638664 - MLT1J2 LTR MaLR 0 422 312 22 35 0 0 chr1 226025745 226025774 -16638579 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 226026069 226026097 -16638256 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 226026386 226026415 -16637938 + AT_rich Low_complexity Low_complexity 1 29 0 232 255 43 32 chr1 226026475 226026569 -16637784 + L1MC/D LINE L1 5703 5797 -2011 366 302 39 8 chr1 226026733 226026862 -16637491 - MIR SINE MIR -49 213 81 490 157 19 46 chr1 226026968 226027076 -16637277 + MER44D DNA MER2_type 30 404 -205 264 87 0 0 chr1 226027176 226027222 -16637131 + AluSg SINE Alu 255 300 0 1209 270 232 8 chr1 226028660 226029142 -16635211 + MLT1G1 LTR MaLR 4 593 -2 948 176 32 5 chr1 226029648 226029836 -16634517 - MER4C LTR ERV1 0 465 273 1509 173 16 94 chr1 226030022 226030490 -16633863 - MER4A LTR ERV1 -186 349 3 1507 181 183 2 chr1 226030548 226030907 -16633446 - LTR54B LTR ERV1 -2 496 49 195 42 0 0 chr1 226030907 226030931 -16633422 + (GTCTG)n Simple_repeat Simple_repeat 1 24 0 1507 181 183 2 chr1 226030931 226030991 -16633362 - LTR54B LTR ERV1 -449 49 1 1539 264 166 0 chr1 226031038 226031503 -16632850 + MLT1F LTR MaLR 1 542 0 484 302 67 0 chr1 226031567 226031716 -16632637 + MIR SINE MIR 104 262 0 228 253 167 35 chr1 226031840 226032038 -16632315 + MER34 LTR ERV1 41 264 -278 242 277 113 0 chr1 226032077 226032236 -16632117 + LTR48 LTR ERV1 570 746 -41 842 154 75 4 chr1 226033265 226033472 -16630881 + MSTC LTR MaLR 1 303 -125 1582 101 0 21 chr1 226033476 226033713 -16630640 - L1MB3 LINE L1 -198 5985 5754 4200 91 25 36 chr1 226033713 226034326 -16630027 + LTR9 LTR ERV1 1 606 -6 399 164 48 0 chr1 226034332 226034409 -16629944 - L1MB3 LINE L1 -414 5757 5675 1307 179 27 37 chr1 226036218 226036432 -16627921 - AluJb SINE Alu 0 312 124 198 0 0 0 chr1 226036432 226036454 -16627899 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1307 179 27 37 chr1 226036454 226036577 -16627776 - AluJb SINE Alu -188 124 1 2027 125 3 3 chr1 226036676 226036981 -16627372 - AluSx SINE Alu -7 305 1 979 140 6 34 chr1 226037013 226037191 -16627162 + L1MC1 LINE L1 6161 6333 0 23 33 0 0 chr1 226037264 226037294 -16627059 + AT_rich Low_complexity Low_complexity 1 30 0 495 307 39 13 chr1 226037783 226037936 -16626417 + MER91A DNA MER1_type 22 178 -18 1368 164 27 47 chr1 226038382 226038681 -16625672 - AluJo SINE Alu -18 294 2 658 179 22 52 chr1 226038832 226038966 -16625387 - FAM SINE Alu -48 137 8 434 252 50 8 chr1 226039027 226039146 -16625207 + MLT1G1 LTR MaLR 16 139 -456 2320 120 25 8 chr1 226039245 226039603 -16624750 + THE1B LTR MaLR 1 364 0 9558 108 65 45 chr1 226039604 226041146 -16623207 + THE1B-int LTR MaLR 2 1574 -6 1294 123 49 5 chr1 226041153 226041356 -16622997 + THE1B LTR MaLR 3 214 -150 761 177 15 0 chr1 226041365 226041495 -16622858 - FLAM_C SINE Alu -1 132 1 633 146 0 0 chr1 226041497 226041600 -16622753 - AluSp/q SINE Alu -1 312 210 5332 234 25 27 chr1 226042781 226044464 -16619889 + L1 LINE L1 2799 4479 -1667 1142 185 145 54 chr1 226044470 226044746 -16619607 + AluJo SINE Alu 2 302 0 216 111 0 0 chr1 226044747 226044783 -16619570 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 242 234 134 88 chr1 226045591 226045713 -16618640 - L1MC5 LINE L1 -48 7913 7798 2077 121 3 0 chr1 226045713 226045730 -16618623 - AluSp SINE Alu -6 307 292 276 30 0 0 chr1 226045730 226045763 -16618590 + (TA)n Simple_repeat Simple_repeat 1 33 0 2077 121 3 0 chr1 226045763 226046051 -16618302 - AluSp SINE Alu -21 292 1 242 234 134 88 chr1 226046051 226046189 -16618164 - L1MC5 LINE L1 -163 7798 7641 336 184 102 7 chr1 226046202 226046287 -16618066 - MIR SINE MIR -88 120 28 1470 157 39 57 chr1 226048161 226048289 -16616064 + AluJo SINE Alu 1 130 -182 2074 124 10 0 chr1 226048289 226048579 -16615774 - AluSx SINE Alu -19 293 1 1470 157 39 57 chr1 226048579 226048730 -16615623 + AluJo SINE Alu 130 275 -37 423 0 0 0 chr1 226048735 226048782 -16615571 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2306 107 0 0 chr1 226049237 226049537 -16614816 - AluSg SINE Alu -10 300 1 23 0 0 0 chr1 226049560 226049583 -16614770 + AT_rich Low_complexity Low_complexity 1 23 0 1993 122 0 0 chr1 226049583 226049853 -16614500 - AluSx SINE Alu -4 308 39 1543 111 27 0 chr1 226050374 226050692 -16613661 + L1P4 LINE L1 5161 5485 -676 2063 118 0 4 chr1 226050693 226050972 -16613381 + AluSx SINE Alu 2 279 -33 183 100 0 0 chr1 226050972 226051002 -16613351 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2127 132 3 3 chr1 226053460 226053764 -16610589 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr1 226054122 226054142 -16610211 + (T)n Simple_repeat Simple_repeat 1 20 0 270 219 0 16 chr1 226054155 226054219 -16610134 + MLT1J LTR MaLR 443 505 -6 351 104 39 65 chr1 226054835 226054912 -16609441 - MER67C LTR ERV1 -635 75 1 259 234 16 0 chr1 226055270 226055334 -16609019 - MIR SINE MIR -21 241 177 3436 177 34 42 chr1 226055659 226056392 -16607961 + LTR8A LTR ERV1 1 727 0 418 278 172 5 chr1 226057856 226058054 -16606299 + MIR SINE MIR 32 262 0 1855 219 44 38 chr1 226059329 226059831 -16604522 + MLT1D LTR MaLR 1 505 0 198 191 0 0 chr1 226060370 226060412 -16603941 + (TA)n Simple_repeat Simple_repeat 1 42 0 925 281 48 48 chr1 226060439 226060940 -16603413 + L1MEc LINE L1 1290 1932 -4631 1886 170 3 0 chr1 226060940 226061234 -16603119 + AluSx SINE Alu 1 295 -17 925 281 48 48 chr1 226061234 226061293 -16603060 + L1MEc LINE L1 1932 1989 -4574 1872 117 89 7 chr1 226061527 226061808 -16602545 - AluSx SINE Alu -8 304 1 1227 245 131 48 chr1 226061842 226062427 -16601926 + L1MEc LINE L1 2036 2693 -3689 2047 133 3 16 chr1 226062427 226062736 -16601617 + AluSx SINE Alu 1 305 -7 1227 245 131 48 chr1 226062736 226063114 -16601239 + L1MEc LINE L1 2693 3038 -3344 2305 77 14 26 chr1 226063214 226063669 -16600684 - PABL_A LTR ERV1 -164 496 6 3802 167 21 1 chr1 226063669 226064335 -16600018 + L1MA4 LINE L1 5611 6289 -11 356 192 64 0 chr1 226064925 226065003 -16599350 - L1MB3 LINE L1 0 6183 6101 571 176 0 0 chr1 226065005 226065096 -16599257 - Tigger5 DNA MER2_type -1 2322 2232 1941 139 7 4 chr1 226065096 226065377 -16598976 + AluJo SINE Alu 1 282 -30 525 68 0 0 chr1 226065614 226065725 -16598628 + Alu SINE Alu 237 347 0 517 252 13 26 chr1 226065890 226066045 -16598308 + L2 LINE L2 3159 3311 -2 333 371 21 48 chr1 226066054 226066307 -16598046 - L2 LINE L2 -1824 1490 1247 1673 212 106 41 chr1 226066307 226066912 -16597441 + LTR48B LTR ERV1 1 644 0 333 371 21 48 chr1 226066912 226066992 -16597361 - L2 LINE L2 -2067 1247 1166 217 356 42 17 chr1 226067316 226067434 -16596919 + L2 LINE L2 3122 3242 -30 1355 202 58 55 chr1 226067510 226067925 -16596428 - LTR37A LTR ERV1 0 426 11 2640 204 56 2 chr1 226068122 226068641 -16595712 + MER74A LTR ERVL 12 558 0 316 339 70 35 chr1 226068641 226068871 -16595482 - L2 LINE L2 -225 3047 2810 239 364 31 20 chr1 226069040 226069235 -16595118 + MLT1K LTR MaLR 220 416 -172 210 316 10 114 chr1 226069489 226069682 -16594671 - L2 LINE L2 -567 2747 2575 2254 113 0 0 chr1 226069913 226070205 -16594148 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr1 226072031 226072053 -16592300 + (CAT)n Simple_repeat Simple_repeat 1 22 0 601 258 166 18 chr1 226073059 226073628 -16590725 + L1MEd LINE L1 896 1598 -4712 255 276 0 0 chr1 226074066 226074124 -16590229 + GA-rich Low_complexity Low_complexity 2 59 0 1429 175 31 48 chr1 226074411 226074703 -16589650 + AluJo SINE Alu 1 287 -15 36 23 0 0 chr1 226074712 226074755 -16589598 + AT_rich Low_complexity Low_complexity 1 43 0 189 261 0 0 chr1 226075801 226075847 -16588506 + MIR3 SINE MIR 154 199 -9 606 238 70 0 chr1 226076050 226076193 -16588160 + MIR SINE MIR 93 245 -17 22 0 0 0 chr1 226076436 226076458 -16587895 + AT_rich Low_complexity Low_complexity 1 22 0 190 290 0 14 chr1 226077198 226077267 -16587086 - L2 LINE L2 0 3272 3205 893 124 8 0 chr1 226077392 226077521 -16586832 - FLAM_C SINE Alu -3 130 1 192 331 153 27 chr1 226077614 226077986 -16586367 - L2 LINE L2 -352 2962 2544 1864 174 14 0 chr1 226079157 226079451 -16584902 + AluJb SINE Alu 1 298 -14 198 376 0 21 chr1 226079990 226080083 -16584270 + L2 LINE L2 2957 3047 -225 216 325 12 12 chr1 226081770 226081853 -16582500 + CT-rich Low_complexity Low_complexity 4 86 0 293 301 95 67 chr1 226082034 226082499 -16581854 - L2 LINE L2 -830 2484 2007 230 274 44 44 chr1 226082722 226082835 -16581518 + MIR3 SINE MIR 88 200 -8 229 295 39 0 chr1 226083056 226083134 -16581219 - MIR SINE MIR -111 151 71 1862 172 0 7 chr1 226084159 226084449 -16579904 - AluJb SINE Alu -24 288 1 382 297 17 8 chr1 226084672 226084790 -16579563 - L2 LINE L2 -2 3311 3193 30 83 0 0 chr1 226084933 226085005 -16579348 + AT_rich Low_complexity Low_complexity 1 72 0 385 278 10 0 chr1 226085826 226085923 -16578430 - L2 LINE L2 0 3272 3175 308 24 24 0 chr1 226086164 226086205 -16578148 + (GGAGA)n Simple_repeat Simple_repeat 1 42 0 201 250 0 0 chr1 226086576 226086624 -16577729 - L2 LINE L2 -18 3254 3207 4554 131 12 6 chr1 226087674 226088401 -16575952 + L1PA16 LINE L1 5419 6150 -16 492 286 185 8 chr1 226088407 226088785 -16575568 - L1MEc LINE L1 -5682 714 270 1982 115 4 11 chr1 226089010 226089289 -16575064 - AluSq SINE Alu -36 277 1 767 254 181 16 chr1 226090384 226090699 -16573654 + MLT1D LTR MaLR 5 371 -134 346 49 0 0 chr1 226094037 226094078 -16570275 - MSTD LTR MaLR -355 41 1 680 330 105 6 chr1 226094208 226094559 -16569794 + LTR16B LTR ERVL 48 433 -31 342 67 0 0 chr1 226094614 226094659 -16569694 + (CA)n Simple_repeat Simple_repeat 2 46 0 1781 117 0 0 chr1 226096447 226096696 -16567657 + AluY SINE Alu 63 311 0 2459 94 0 0 chr1 226096714 226097013 -16567340 + AluSg SINE Alu 1 299 -11 2090 128 7 3 chr1 226097017 226097321 -16567032 + AluSx SINE Alu 1 305 -7 366 295 9 0 chr1 226097322 226097427 -16566926 - LTR33 LTR ERVL -85 436 331 606 172 52 0 chr1 226097449 226097565 -16566788 + FRAM SINE Alu 55 176 0 2145 100 41 0 chr1 226097568 226097859 -16566494 + AluSg SINE Alu 1 303 -7 1650 254 36 18 chr1 226098039 226098535 -16565818 - MLT1D LTR MaLR 0 505 1 1939 132 7 3 chr1 226099588 226099883 -16564470 + AluSx SINE Alu 1 296 -16 1358 139 0 5 chr1 226100284 226100493 -16563860 - HERVH LTR ERV1 -4014 3699 3492 * 22199 106 14 10 chr1 226100483 226103762 -16560591 - HERVH LTR ERV1 -4423 3290 1 2665 93 63 21 chr1 226103764 226104194 -16560159 - LTR7 LTR ERV1 -2 448 1 * 4888 111 28 0 chr1 226104194 226104869 -16559484 + MER4D LTR ERV1 87 780 -123 1002 149 0 25 chr1 226105553 226105714 -16558639 + FRAM SINE Alu 6 162 -14 997 275 104 63 chr1 226105739 226105949 -16558404 - L1MC4a LINE L1 -1676 6132 5932 2324 105 0 3 chr1 226105949 226106253 -16558100 - AluSg SINE Alu -7 303 1 997 275 104 63 chr1 226106253 226106631 -16557722 - L1MC4a LINE L1 -1876 5932 5520 2084 121 7 3 chr1 226106631 226106929 -16557424 - AluSx SINE Alu -13 299 1 1812 160 52 62 chr1 226109075 226109444 -16554909 - MLT1A1 LTR MaLR 0 365 1 822 110 8 0 chr1 226109724 226109851 -16554502 - L1MA4A LINE L1 -6 6297 6170 224 122 24 0 chr1 226109856 226109897 -16554456 + CT-rich Low_complexity Low_complexity 1 42 0 1660 113 13 4 chr1 226109897 226110136 -16554217 - AluSg/x SINE Alu -2 310 70 483 221 29 10 chr1 226111237 226111341 -16553012 + LTR25 LTR ERV1 248 353 -441 296 195 51 153 chr1 226111320 226111438 -16552915 + MER61E LTR ERV1 84 189 -380 * 763 198 30 12 chr1 226111515 226111682 -16552671 + MER61E LTR ERV1 339 508 -61 432 0 0 0 chr1 226113060 226113108 -16551245 + (TG)n Simple_repeat Simple_repeat 2 49 0 959 169 5 62 chr1 226113136 226113331 -16551022 - MLT1F1 LTR MaLR -3 564 381 966 147 163 80 chr1 226113432 226113732 -16550621 - MER63 DNA MER1_type -736 325 1 1705 261 58 36 chr1 226113732 226113942 -16550411 - L1ME3A LINE L1 -313 5857 5653 2727 160 38 18 chr1 226113942 226114437 -16549916 - MLT1D LTR MaLR 0 505 1 1705 261 58 36 chr1 226114437 226115166 -16549187 - L1ME3A LINE L1 -517 5653 4886 2281 116 0 0 chr1 226115613 226115915 -16548438 + AluSx SINE Alu 1 302 -10 383 172 16 0 chr1 226115917 226115981 -16548372 + ERVL LTR ERVL 2034 2098 -3666 2133 250 30 16 chr1 226116012 226116576 -16547777 + ERVL LTR ERVL 2217 2788 -2976 489 258 18 36 chr1 226116563 226116730 -16547623 + ERVL LTR ERVL 5026 5189 -575 * 1748 187 0 7 chr1 226117192 226117491 -16546862 - AluJb SINE Alu -15 297 1 1228 177 9 22 chr1 226117781 226118007 -16546346 - MER58A DNA MER1_type -1 223 1 1777 141 52 75 chr1 226118698 226119082 -16545271 - THE1C LTR MaLR 0 375 1 10021 110 66 10 chr1 226119086 226120578 -16543775 - THE1C-int LTR MaLR -5 1575 1 527 276 94 69 chr1 226120603 226120905 -16543448 - MLT1L LTR MaLR -85 464 199 3977 164 2 3 chr1 226120929 226121564 -16542789 - LTR27 LTR ERV1 0 636 3 471 207 128 64 chr1 226121983 226122171 -16542182 + LTR45 LTR ERV1 326 525 0 2367 60 14 0 chr1 226122326 226122609 -16541744 + AluY SINE Alu 1 287 -24 22 0 0 0 chr1 226122616 226122638 -16541715 + AT_rich Low_complexity Low_complexity 1 22 0 2504 203 40 45 chr1 226122798 226122988 -16541365 + L1MA9 LINE L1 5637 5826 -486 2041 141 3 10 chr1 226122988 226123294 -16541059 + AluJb SINE Alu 1 304 -8 2504 203 40 45 chr1 226123294 226123730 -16540623 + L1MA9 LINE L1 5826 6260 -52 40 21 0 0 chr1 226175540 226175587 -16488766 + AT_rich Low_complexity Low_complexity 1 47 0 1154 252 40 13 chr1 226175711 226176088 -16488265 - HsTC2a DNA Tc2 0 744 358 377 307 169 0 chr1 226176125 226176314 -16488039 - L2 LINE L2 -380 2934 2714 275 0 29 0 chr1 226176323 226176358 -16487995 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 535 302 83 32 chr1 226176367 226176619 -16487734 - HsTC2a DNA Tc2 -479 265 1 2614 287 139 34 chr1 226177189 226178243 -16486110 - L2 LINE L2 0 3313 2371 2113 104 11 0 chr1 226178243 226178546 -16485807 - AluSx SINE Alu 0 307 2 2614 287 139 34 chr1 226178546 226179261 -16485092 - L2 LINE L2 -942 2371 1349 473 188 20 188 chr1 226179272 226179363 -16484990 + MER5B DNA MER1_type 15 57 -121 2149 117 0 0 chr1 226179363 226179645 -16484708 - AluSx SINE Alu -25 287 6 473 188 20 188 chr1 226179645 226179750 -16484603 + MER5B DNA MER1_type 57 178 0 522 316 171 25 chr1 226179751 226180090 -16484263 - L2 LINE L2 -1963 1351 956 1694 164 0 60 chr1 226180090 226180407 -16483946 + AluJb SINE Alu 5 302 -10 522 316 171 25 chr1 226180407 226180424 -16483929 - L2 LINE L2 -2358 956 943 2086 88 40 0 chr1 226181044 226181248 -16483105 - AluSx SINE Alu 0 338 117 342 45 0 0 chr1 226181248 226181292 -16483061 + (TG)n Simple_repeat Simple_repeat 2 45 0 2086 88 40 0 chr1 226181292 226181414 -16482939 - AluSx SINE Alu -221 117 1 752 212 0 0 chr1 226181499 226181631 -16482722 + AluJo SINE Alu 2 133 -169 541 337 31 5 chr1 226181640 226181836 -16482517 - MIR SINE MIR -14 248 48 757 241 6 12 chr1 226181838 226182008 -16482345 + AluJo SINE Alu 139 307 -5 300 304 0 0 chr1 226182968 226183047 -16481306 + MIR SINE MIR 69 147 -115 419 197 118 0 chr1 226183074 226183150 -16481203 + AluJ/FLAM SINE Alu 2 86 -226 837 165 0 0 chr1 226183180 226183313 -16481040 + FRAM SINE Alu 35 167 -9 221 214 29 0 chr1 226183386 226183456 -16480897 + (TA)n Simple_repeat Simple_repeat 2 73 0 2122 121 0 7 chr1 226183884 226184189 -16480164 + AluSx SINE Alu 1 303 -9 2001 168 52 28 chr1 226184315 226184737 -16479616 - MLT1D LTR MaLR -73 432 1 725 194 8 16 chr1 226185057 226185186 -16479167 - FLAM_A SINE Alu -5 128 1 4429 215 60 12 chr1 226185555 226186547 -16477806 + MER45B DNA AcHobo 1 1040 0 2064 163 7 100 chr1 226186717 226186853 -16477500 - MLT1B LTR MaLR -1 389 242 1301 66 0 11 chr1 226186853 226187035 -16477318 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2064 163 7 100 chr1 226187035 226187052 -16477301 - MLT1B LTR MaLR -148 242 225 2219 112 10 0 chr1 226187052 226187357 -16476996 - AluSx SINE Alu -4 308 1 2064 163 7 100 chr1 226187357 226187631 -16476722 - MLT1B LTR MaLR -165 225 1 331 358 53 11 chr1 226188452 226188642 -16475711 - MIR SINE MIR -63 199 2 360 188 5 175 chr1 226188869 226189092 -16475261 - Charlie7 DNA MER1_type 0 2612 2428 1037 223 87 45 chr1 226189816 226190148 -16474205 - MLT1A1 LTR MaLR -19 346 1 187 147 0 29 chr1 226190229 226190263 -16474090 - MIR SINE MIR -9 253 221 289 295 0 0 chr1 226190309 226190370 -16473983 + MER91A DNA MER1_type 4 64 -132 604 176 0 9 chr1 226191830 226191938 -16472415 + L1MA8 LINE L1 3852 3958 -2188 4644 163 12 46 chr1 226191950 226193497 -16470856 + L1MA8 LINE L1 4446 5943 -348 2086 126 0 0 chr1 226193863 226194148 -16470205 - AluSx SINE Alu -26 286 2 2924 224 208 60 chr1 226194196 226194713 -16469640 - L1MC4 LINE L1 -140 7902 7463 930 155 62 12 chr1 226194713 226194874 -16469479 - FAM SINE Alu -3 172 4 2924 224 208 60 chr1 226194874 226195080 -16469273 - L1MC4 LINE L1 -579 7463 7289 2317 92 0 3 chr1 226195080 226195383 -16468970 - AluSp SINE Alu -11 302 1 2924 224 208 60 chr1 226195383 226195915 -16468438 - L1MC4 LINE L1 -753 7289 6459 205 267 0 0 chr1 226197587 226197632 -16466721 + MER91A DNA MER1_type 132 176 -14 2157 87 32 26 chr1 226197710 226197849 -16466504 + L1MA3 LINE L1 5995 6132 -173 2233 113 0 0 chr1 226197849 226198150 -16466203 + AluSg SINE Alu 1 301 -9 2157 87 32 26 chr1 226198150 226198319 -16466034 + L1MA3 LINE L1 6132 6305 0 1671 159 28 38 chr1 226198334 226198624 -16465729 + AluJo SINE Alu 1 287 -25 34 0 0 0 chr1 226198625 226198659 -16465694 + AT_rich Low_complexity Low_complexity 1 34 0 * 276 274 0 0 chr1 226198645 226198659 -16465694 + AluYa8 SINE Alu 120 133 -167 2102 131 0 7 chr1 226198659 226198957 -16465396 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr1 226198997 226199017 -16465336 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1311 142 69 30 chr1 226199331 226199564 -16464789 - LTR47A LTR ERVL 0 452 211 1596 149 96 31 chr1 226199884 226200310 -16464043 - LTR54 LTR ERV1 -2 496 5 2926 161 83 82 chr1 226200502 226200848 -16463505 + MER67C LTR ERV1 1 345 -365 2056 128 19 19 chr1 226200848 226201160 -16463193 - AluJo SINE Alu 0 312 1 2926 161 83 82 chr1 226201160 226201522 -16462831 + MER67C LTR ERV1 345 710 0 218 179 36 36 chr1 226201529 226201585 -16462768 + MIR3 SINE MIR 153 208 0 569 249 73 0 chr1 226202075 226202240 -16462113 - MIR SINE MIR 0 262 86 2036 95 78 3 chr1 226202675 226202958 -16461395 - AluSc SINE Alu -5 304 1 2259 148 70 52 chr1 226203067 226203507 -16460846 + MER83 LTR ERV1 1 448 0 407 303 21 21 chr1 226204208 226204350 -16460003 - MIR SINE MIR -4 258 117 1960 115 62 0 chr1 226204383 226204671 -16459682 + AluSg SINE Alu 1 306 -4 2436 87 0 0 chr1 226204750 226205050 -16459303 - AluSg SINE Alu -10 300 1 2363 221 33 23 chr1 226205064 226205503 -16458850 - L1ME2 LINE L1 -1 6163 5715 1017 198 67 126 chr1 226205503 226205997 -16458356 + MER4C LTR ERV1 1 465 0 2363 221 33 23 chr1 226205997 226206164 -16458189 - L1ME2 LINE L1 -449 5715 5551 579 238 61 42 chr1 226206180 226206394 -16457959 - L2 LINE L2 -6 3307 3090 183 156 0 0 chr1 226206433 226206465 -16457888 + A-rich Low_complexity Low_complexity 1 32 0 206 283 75 0 chr1 226206498 226206551 -16457802 - L2 LINE L2 -1385 1929 1873 608 279 79 26 chr1 226206638 226206867 -16457486 + MIR SINE MIR 22 262 0 4005 198 38 31 chr1 226208069 226208927 -16455426 + L1MC2 LINE L1 4391 5247 -946 1799 176 0 3 chr1 226208927 226209223 -16455130 + AluSx SINE Alu 12 306 -6 4005 198 38 31 chr1 226209223 226209429 -16454924 + L1MC2 LINE L1 5247 5450 -743 2048 221 104 81 chr1 226209430 226210132 -16454221 + MER21B LTR ERV1 1 718 -145 1631 123 13 4 chr1 226210210 226210446 -16453907 + L1MC2 LINE L1 5447 5684 -660 1191 192 12 31 chr1 226210446 226210657 -16453696 + L1MC2 LINE L1 6095 6309 -35 1739 177 74 52 chr1 226210657 226211114 -16453239 - MLT1C LTR MaLR 0 467 1 1191 192 12 31 chr1 226211114 226211150 -16453203 + L1MC2 LINE L1 6309 6344 0 401 268 18 67 chr1 226211954 226212118 -16452235 + MLT1J LTR MaLR 235 390 -121 1751 198 126 95 chr1 226212130 226212959 -16451394 - L1MC5 LINE L1 -472 7489 6636 2486 59 0 0 chr1 226213167 226213471 -16450882 - AluY SINE Alu -7 304 1 850 247 161 66 chr1 226213586 226213929 -16450424 - L1MC4a LINE L1 -1571 6220 5911 2120 135 0 7 chr1 226213929 226214232 -16450121 - AluSx SINE Alu -11 301 1 374 0 22 0 chr1 226214242 226214288 -16450065 + (TG)n Simple_repeat Simple_repeat 2 48 0 1772 95 123 8 chr1 226214288 226214541 -16449812 - AluSg SINE Alu -28 282 1 850 247 161 66 chr1 226214541 226214776 -16449577 - L1MC4a LINE L1 -1887 5904 5574 407 267 73 15 chr1 226214813 226215019 -16449334 - L1MC4a LINE L1 -1827 4302 4085 1548 278 77 27 chr1 226215166 226215829 -16448524 - L1MC4a LINE L1 -2016 4113 3418 2638 45 3 3 chr1 226215854 226216165 -16448188 + AluY SINE Alu 1 311 0 802 134 41 6 chr1 226216281 226216452 -16447901 + CT-rich Low_complexity Low_complexity 1 177 0 330 239 86 69 chr1 226216484 226216599 -16447754 - L1MC4a LINE L1 -2924 3205 3093 2309 190 39 7 chr1 226216599 226217036 -16447317 - L1PB4 LINE L1 -7 6149 5699 330 239 86 69 chr1 226217036 226217268 -16447085 - L1MC4a LINE L1 -3036 3093 2852 271 114 0 0 chr1 226217276 226217320 -16447033 + L1MA8 LINE L1 6231 6274 -17 32751 107 11 55 chr1 226217540 226223966 -16440387 - L1PA7 LINE L1 0 6154 12 406 276 137 39 chr1 226224067 226224506 -16439847 - L1MC4a LINE L1 -3525 2604 2123 363 271 0 37 chr1 226224703 226224810 -16439543 - L1MC/D LINE L1 -2010 5798 5696 582 300 55 38 chr1 226225132 226225479 -16438874 - L1MC4a LINE L1 -4870 1249 897 417 346 54 57 chr1 226225565 226226308 -16438045 - L1MC4a LINE L1 -5369 750 10 24 32 0 0 chr1 226227141 226227172 -16437181 + AT_rich Low_complexity Low_complexity 1 31 0 309 316 89 36 chr1 226227429 226227597 -16436756 + MIR SINE MIR 6 182 -80 1600 209 0 3 chr1 226227789 226228097 -16436256 - AluJo SINE Alu 0 307 1 1904 144 0 4 chr1 226229334 226229612 -16434741 + AluJb SINE Alu 5 281 -31 2317 179 35 42 chr1 226229618 226230320 -16434033 + L1MC3 LINE L1 5316 7686 -99 259 251 76 7 chr1 226230321 226230423 -16433930 + MER39 LTR ERV1 1 102 -542 3247 193 86 83 chr1 226230453 226231038 -16433315 - MER21A LTR ERV1 -6 925 336 2352 92 7 0 chr1 226231038 226231344 -16433009 + AluSx SINE Alu 1 308 -4 3247 193 86 83 chr1 226231344 226231669 -16432684 - MER21A LTR ERV1 -595 336 13 1048 227 104 57 chr1 226231699 226232083 -16432270 + MER39 LTR ERV1 306 707 0 435 178 131 19 chr1 226232083 226232190 -16432163 + L1MC2 LINE L1 6226 6344 0 202 111 0 37 chr1 226232281 226232335 -16432018 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 410 249 10 114 chr1 226232483 226232676 -16431677 + MER31-int LTR ERV1 3723 3895 -1041 303 208 66 57 chr1 226232867 226232973 -16431380 + MER31-int LTR ERV1 4095 4201 -735 748 190 16 0 chr1 226233165 226233286 -16431067 - FLAM_A SINE Alu -9 124 2 1074 251 4 7 chr1 226233287 226233566 -16430787 + LTR37A LTR ERV1 129 406 -20 2043 93 0 11 chr1 226233970 226234239 -16430114 + AluSx SINE Alu 37 302 -10 490 270 112 13 chr1 226235087 226235239 -16429114 + MIR3 SINE MIR 16 182 -26 2324 161 27 52 chr1 226235650 226236135 -16428218 - L1MB3 LINE L1 -7 6176 5704 2278 128 93 18 chr1 226236135 226236533 -16427820 + MSTA LTR MaLR 1 428 0 577 356 79 13 chr1 226238091 226238758 -16425595 + L2 LINE L2 2544 3257 -56 454 291 9 0 chr1 226238759 226238869 -16425484 - L2 LINE L2 -2 3311 3201 191 301 219 8 chr1 226239720 226239843 -16424510 - L2 LINE L2 -201 3071 2923 2622 227 135 30 chr1 226239926 226240450 -16423903 + L1ME2 LINE L1 4403 4871 -1293 405 54 0 0 chr1 226240450 226240506 -16423847 + (CA)n Simple_repeat Simple_repeat 1 56 0 2622 227 135 30 chr1 226240506 226241556 -16422797 + L1ME2 LINE L1 4871 6148 -16 702 158 17 23 chr1 226241560 226241737 -16422616 + GA-rich Low_complexity Low_complexity 3 178 0 577 242 81 54 chr1 226242652 226243051 -16421302 - LTR45B LTR ERV1 0 593 203 2076 121 3 32 chr1 226244751 226245066 -16419287 + AluSx SINE Alu 1 306 -6 207 100 0 0 chr1 226245194 226245224 -16419129 + (CCA)n Simple_repeat Simple_repeat 1 30 0 1200 175 24 82 chr1 226246698 226246990 -16417363 - L1MB8 LINE L1 -51 6127 5853 2816 133 16 63 chr1 226247229 226247739 -16416614 - LTR19A LTR ERV1 0 486 1 417 255 0 10 chr1 226247847 226247945 -16416408 - MIR3 SINE MIR -6 202 106 327 254 45 18 chr1 226248118 226248250 -16416103 + MLT1G LTR MaLR 1 127 -428 * 901 252 96 16 chr1 226248237 226248445 -16415908 + MLT1G LTR MaLR 253 496 -94 3458 120 138 0 chr1 226248445 226249003 -16415350 - LTR24C LTR ERV1 0 635 1 901 252 96 16 chr1 226249003 226249107 -16415246 + MLT1G LTR MaLR 496 590 0 281 258 21 31 chr1 226249331 226249428 -16414925 - MIR SINE MIR -121 141 46 1175 134 51 23 chr1 226249568 226249785 -16414568 - L1PA16 LINE L1 0 6166 5944 2615 107 24 3 chr1 226249972 226250354 -16413999 + MLT1B LTR MaLR 1 390 0 543 141 0 12 chr1 226250370 226250455 -16413898 + AluJ/FLAM SINE Alu 1 84 -228 2971 165 32 45 chr1 226251434 226251789 -16412564 - LTR39 LTR ERV1 0 783 436 1842 156 7 30 chr1 226251789 226252091 -16412262 + AluJo SINE Alu 3 297 -15 2971 165 32 45 chr1 226252091 226252292 -16412061 - LTR39 LTR ERV1 -347 436 234 209 267 44 33 chr1 226252848 226252938 -16411415 + MIR SINE MIR 102 192 -70 1983 125 0 14 chr1 226252981 226253296 -16411057 + AluJb SINE Alu 1 311 0 2094 190 126 12 chr1 226254514 226255014 -16409339 - MER74A LTR ERVL -1 557 1 295 267 9 38 chr1 226255434 226255539 -16408814 - MIR3 SINE MIR 0 208 107 822 167 61 16 chr1 226255547 226255735 -16408618 - MER4D LTR ERV1 0 903 544 1859 147 14 17 chr1 226255735 226256028 -16408325 + AluSx SINE Alu 1 292 -20 1450 236 163 78 chr1 226256205 226256322 -16408031 - MER21B LTR ERV1 -109 754 648 1595 149 159 48 chr1 226256322 226256737 -16407616 - LOR1b LTR ERV1 0 461 1 1450 236 163 78 chr1 226256737 226257314 -16407039 - MER21B LTR ERV1 -215 648 1 243 0 0 0 chr1 226257398 226257425 -16406928 + (TTG)n Simple_repeat Simple_repeat 3 29 0 4205 149 9 9 chr1 226257440 226258104 -16406249 - LTR51 LTR ERV1 0 671 8 281 243 32 95 chr1 226258110 226258299 -16406054 + L1ME4a LINE L1 5935 6111 -10 3653 213 22 30 chr1 226258326 226258493 -16405860 - L1MA10 LINE L1 -1 6333 6166 195 42 0 0 chr1 226258493 226258517 -16405836 + (TTA)n Simple_repeat Simple_repeat 2 25 0 3653 213 22 30 chr1 226258517 226259011 -16405342 - L1MA10 LINE L1 -168 6166 5678 2142 119 3 3 chr1 226259011 226259305 -16405048 - AluSq SINE Alu -19 294 1 3653 213 22 30 chr1 226259305 226259501 -16404852 - L1MA10 LINE L1 -656 5678 5482 1848 165 26 12 chr1 226259502 226259847 -16404506 - L1PB4 LINE L1 -1 6155 5806 1897 118 171 47 chr1 226260245 226260317 -16404036 - MSTA LTR MaLR 0 428 366 2185 142 0 0 chr1 226260317 226260628 -16403725 + AluSx SINE Alu 1 311 -1 1897 118 171 47 chr1 226260628 226260936 -16403417 - MSTA LTR MaLR -62 366 1 261 259 86 0 chr1 226261063 226261144 -16403209 + MIR SINE MIR 161 248 -14 1859 245 90 25 chr1 226261157 226261270 -16403083 + L1ME3A LINE L1 5465 5569 -601 2497 136 81 0 chr1 226261270 226261666 -16402687 + MSTC LTR MaLR 1 428 0 1859 245 90 25 chr1 226261666 226262205 -16402148 + L1ME3A LINE L1 5569 6160 -10 855 161 77 0 chr1 226262338 226262493 -16401860 + AluJo SINE Alu 126 292 -20 423 277 31 22 chr1 226263514 226263708 -16400645 - L1ME3A LINE L1 -160 6004 5807 231 167 0 0 chr1 226263733 226263769 -16400584 + L1ME4a LINE L1 5990 6025 -96 951 104 35 7 chr1 226263770 226263914 -16400439 - L1MA4 LINE L1 -3 6297 6150 440 105 13 0 chr1 226264227 226264303 -16400050 + (TG)n Simple_repeat Simple_repeat 1 77 0 1963 173 49 3 chr1 226264303 226264672 -16399681 + MLT1B LTR MaLR 5 390 0 410 271 0 0 chr1 226265210 226265306 -16399047 - FLAM_A SINE Alu -46 96 1 2653 146 14 56 chr1 226265823 226265910 -16398443 + MER41B LTR ERV1 114 203 -283 2398 84 0 0 chr1 226265910 226266208 -16398145 + AluSc SINE Alu 1 298 -11 2653 146 14 56 chr1 226266208 226266657 -16397696 + MER41B LTR ERV1 203 474 -12 595 146 400 30 chr1 226266780 226266818 -16397535 + L1MC1 LINE L1 5472 5495 -838 3681 163 60 30 chr1 226266818 226267524 -16396829 + LTR8A LTR ERV1 1 727 0 595 146 400 30 chr1 226267524 226267650 -16396703 + L1MC1 LINE L1 5495 5697 -636 3101 103 18 11 chr1 226267651 226268097 -16396256 - MER4D LTR ERV1 -1 902 454 32102 99 7 40 chr1 226268100 226274647 -16389706 - L1PA7 LINE L1 -11 6458 4 2964 124 14 7 chr1 226274649 226275093 -16389260 - MER4D LTR ERV1 -425 447 1 864 162 27 0 chr1 226275094 226275242 -16389111 + L1MC1 LINE L1 5695 5846 -498 541 143 0 0 chr1 226275275 226275366 -16388987 + L1MC1 LINE L1 6243 6333 0 7347 136 10 8 chr1 226275503 226278597 -16385756 + L1PB1 LINE L1 1817 6151 0 442 291 5 95 chr1 226278678 226278781 -16385572 - MLT2E LTR ERVL -410 218 138 2444 100 0 0 chr1 226278781 226279090 -16385263 - AluY SINE Alu -2 309 1 442 291 5 95 chr1 226279090 226279175 -16385178 - MLT2E LTR ERVL -490 138 47 1426 223 76 0 chr1 226279216 226279517 -16384836 - HsTC2 DNA Tc2 -1556 342 19 2685 137 26 5 chr1 226279520 226279937 -16384416 + MSTB LTR MaLR 1 426 0 194 206 0 118 chr1 226279944 226280012 -16384341 - MIR SINE MIR -106 156 97 405 205 46 67 chr1 226280254 226280449 -16383904 + MER112 DNA MER1_type 2 192 -68 759 280 72 55 chr1 226280988 226281489 -16382864 + L1MEc LINE L1 790 1316 -5080 2514 68 0 0 chr1 226281489 226281784 -16382569 - AluY SINE Alu -16 295 1 759 280 72 55 chr1 226281784 226282232 -16382121 + L1MEc LINE L1 1316 1755 -4641 216 182 0 0 chr1 226282296 226282340 -16382013 + (TA)n Simple_repeat Simple_repeat 2 45 0 24 53 0 0 chr1 226282421 226282459 -16381894 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 226282514 226282535 -16381818 + AT_rich Low_complexity Low_complexity 1 21 0 229 243 0 27 chr1 226282607 226282681 -16381672 + L1MEc LINE L1 2199 2270 -3945 449 230 0 0 chr1 226282696 226282783 -16381570 - FRAM/FAM SINE Alu -92 84 1 335 294 224 0 chr1 226283849 226283992 -16380361 + MER91A DNA MER1_type 18 192 -4 2023 175 22 22 chr1 226284117 226284138 -16380215 - MLT1A1 LTR MaLR 0 365 345 4547 194 31 3 chr1 226284138 226285015 -16379338 - MER54A LTR ERVL 0 901 1 2023 175 22 22 chr1 226285015 226285358 -16378995 - MLT1A1 LTR MaLR -19 346 1 1725 124 26 26 chr1 226285627 226285900 -16378453 - AluJo SINE Alu -10 302 30 476 291 63 8 chr1 226286130 226286334 -16378019 + LTR16A LTR ERVL 245 456 -1 1856 292 41 38 chr1 226286341 226288080 -16376273 + ERVL LTR ERVL 3 1851 -3145 277 100 60 0 chr1 226288086 226288136 -16376217 - MLT2C2 LTR ERVL -3 517 465 25 75 0 0 chr1 226288142 226288195 -16376158 + AT_rich Low_complexity Low_complexity 1 53 0 288 154 0 19 chr1 226288198 226288250 -16376103 + MLT2B1 LTR ERVL 470 520 0 2045 158 41 14 chr1 226288305 226288671 -16375682 - MLT2C2 LTR ERVL -88 376 1 255 176 0 129 chr1 226288676 226288761 -16375592 + ERVL LTR ERVL 1904 1977 -3787 1185 341 63 22 chr1 226288844 226289475 -16374878 + ERVL LTR ERVL 2106 2762 -2892 916 311 48 11 chr1 226289466 226289511 -16374842 + ERVL LTR ERVL 2951 2993 -2771 * 1591 153 37 37 chr1 226289511 226289806 -16374547 + AluJo SINE Alu 1 295 -17 916 311 48 11 chr1 226289806 226290117 -16374236 + ERVL LTR ERVL 2993 3320 -2444 1518 174 105 159 chr1 226290138 226290218 -16374135 - LTR8A LTR ERV1 -9 718 635 1947 141 21 0 chr1 226290218 226290509 -16373844 + AluSx SINE Alu 1 297 -15 1518 174 105 159 chr1 226290509 226291187 -16373166 - LTR8A LTR ERV1 -92 635 1 846 305 75 25 chr1 226291188 226291719 -16372634 + ERVL LTR ERVL 3291 3848 -1637 549 283 90 0 chr1 226291880 226292057 -16372296 + ERVL LTR ERVL 4081 4276 -1212 427 339 16 36 chr1 226292520 226292771 -16371582 + ERVL LTR ERVL 5012 5257 -507 727 268 135 41 chr1 226293025 226293387 -16370966 + LTR16A1 LTR ERVL 56 451 -6 1059 149 7 0 chr1 226293494 226293648 -16370705 - AluJo/FRAM SINE Alu -23 289 135 1492 175 73 0 chr1 226293651 226293937 -16370416 - AluSx SINE Alu -4 308 2 273 261 14 0 chr1 226294148 226294217 -16370136 + MLT1K LTR MaLR 519 588 0 1437 154 57 0 chr1 226294381 226294661 -16369692 - L1MB3 LINE L1 -8 6175 5880 189 0 0 0 chr1 226294948 226294969 -16369384 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 341 111 0 0 chr1 226294969 226295014 -16369339 - LTR23 LTR ERV1 -73 364 320 216 0 0 0 chr1 226295134 226295158 -16369195 + (TAA)n Simple_repeat Simple_repeat 1 24 0 236 297 133 0 chr1 226295160 226295273 -16369080 + MIR SINE MIR 23 149 -66 3681 53 2 0 chr1 226297719 226298172 -16366181 - L1PA7 LINE L1 0 6154 5701 459 0 0 0 chr1 226298363 226298414 -16365939 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 518 121 33 33 chr1 226298417 226298508 -16365845 + FLAM_C SINE Alu 27 117 -26 346 227 40 0 chr1 226298536 226298611 -16365742 + MER21B LTR ERV1 13 90 -773 603 260 78 0 chr1 226299058 226299212 -16365141 - MIR SINE MIR -48 214 49 2573 181 30 8 chr1 226299247 226299776 -16364577 + L1MB7 LINE L1 5372 5912 -272 225 0 0 0 chr1 226299794 226299819 -16364534 + (GA)n Simple_repeat Simple_repeat 2 26 0 2022 171 55 20 chr1 226299819 226300223 -16364130 - MER65A LTR ERV1 -27 418 1 5280 237 55 15 chr1 226300224 226302137 -16362216 - MER65A-int LTR ERV1 -1 4870 2836 1023 91 8 0 chr1 226302139 226302271 -16362082 + AluSc SINE Alu 1 133 -176 2233 97 3 7 chr1 226302271 226302571 -16361782 + AluSc SINE Alu 1 299 -10 596 213 155 74 chr1 226302576 226302834 -16361519 - MER65A-int LTR ERV1 -1718 4613 4335 1742 194 97 45 chr1 226302842 226303378 -16360975 - MER65A-int LTR ERV1 -4252 619 56 2475 142 46 25 chr1 226303429 226303865 -16360488 - MER65A LTR ERV1 0 445 1 1431 181 8 8 chr1 226303866 226304125 -16360228 + L1MB7 LINE L1 5910 6168 -16 820 177 22 116 chr1 226304284 226304549 -16359804 + L1ME1 LINE L1 5847 6085 -81 462 18 0 0 chr1 226304549 226304604 -16359749 + (TG)n Simple_repeat Simple_repeat 2 56 0 820 177 22 116 chr1 226304604 226304640 -16359713 + L1ME1 LINE L1 6085 6123 -43 1195 202 10 0 chr1 226304642 226304850 -16359503 + MER2 DNA MER2_type 1 210 -135 22 0 0 0 chr1 226304861 226304883 -16359470 + AT_rich Low_complexity Low_complexity 1 22 0 339 188 31 0 chr1 226304883 226304947 -16359406 + MER2 DNA MER2_type 280 345 0 295 170 0 0 chr1 226304947 226305000 -16359353 + L1MA10 LINE L1 6282 6334 0 2317 153 11 0 chr1 226305129 226305494 -16358859 - MLT1B LTR MaLR 0 390 22 290 341 63 24 chr1 226306053 226306179 -16358174 - MIR SINE MIR -74 188 58 252 0 0 0 chr1 226306202 226306230 -16358123 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 818 196 0 0 chr1 226306989 226307122 -16357231 + FLAM_A SINE Alu 1 133 0 949 229 84 25 chr1 226307128 226307412 -16356941 + L1ME3 LINE L1 5815 6115 -47 417 234 129 8 chr1 226307543 226307667 -16356686 - MER103 DNA DNA -8 158 20 3356 174 22 17 chr1 226309238 226309824 -16354529 + MER77 LTR ERV1 1 589 -16 432 314 109 58 chr1 226310336 226310648 -16353705 + L2 LINE L2 2940 3267 -5 1957 133 32 48 chr1 226310981 226311331 -16353022 + L1MB3 LINE L1 5814 6159 -24 2188 121 87 3 chr1 226311331 226311677 -16352676 + THE1C LTR MaLR 1 375 0 1957 133 32 48 chr1 226311677 226311702 -16352651 + L1MB3 LINE L1 6159 6183 0 1776 191 5 5 chr1 226313102 226313469 -16350884 + L1MA4 LINE L1 4929 5295 -851 311 286 0 0 chr1 226313469 226313546 -16350807 - L1MC4 LINE L1 -1352 6690 6614 198 136 0 0 chr1 226313550 226313594 -16350759 + (TA)n Simple_repeat Simple_repeat 2 45 0 5762 152 19 6 chr1 226313594 226313897 -16350456 + L1MA4 LINE L1 5313 5611 -689 5148 63 63 3 chr1 226313897 226314520 -16349833 - PABL_A LTR ERV1 0 660 1 5762 152 19 6 chr1 226314520 226315181 -16349172 + L1MA4 LINE L1 5611 6289 -11 360 192 64 0 chr1 226315771 226315849 -16348504 - L1MB3 LINE L1 0 6183 6101 574 176 0 0 chr1 226315851 226315942 -16348411 - MER47B DNA MER2_type -1 417 327 1925 139 7 4 chr1 226315942 226316223 -16348130 + AluJo SINE Alu 1 282 -30 221 230 14 0 chr1 226316227 226316301 -16348052 + (TA)n Simple_repeat Simple_repeat 1 75 0 2030 151 18 35 chr1 226316313 226316651 -16347702 - MER47B DNA MER2_type -83 335 4 4224 165 54 25 chr1 226316651 226317863 -16346490 - L1MB3 LINE L1 -83 6100 4856 772 263 92 40 chr1 226318642 226319022 -16345331 - L1ME LINE L1 -385 5785 5386 282 266 53 32 chr1 226319203 226319297 -16345056 - MER5B DNA MER1_type -79 99 4 257 355 81 11 chr1 226319463 226319649 -16344704 + L2 LINE L2 2719 2917 -397 1426 204 4 15 chr1 226319658 226319923 -16344430 - MER4D LTR ERV1 -87 816 555 1748 142 7 27 chr1 226320005 226320301 -16344052 - MER49 LTR ERV1 -633 290 1 192 344 16 0 chr1 226320302 226320366 -16343987 + L2 LINE L2 3208 3272 0 2225 117 0 0 chr1 226320472 226320770 -16343583 + AluSq SINE Alu 1 298 -15 374 115 81 7 chr1 226321654 226321802 -16342551 + (TG)n Simple_repeat Simple_repeat 2 160 0 437 157 130 17 chr1 226321916 226322031 -16342322 + MER5B DNA MER1_type 1 128 -50 380 234 241 21 chr1 226322063 226322208 -16342145 - MER5A DNA MER1_type 0 189 13 379 252 106 33 chr1 226322330 226322481 -16341872 - MER5B DNA MER1_type -16 162 1 420 146 65 26 chr1 226322766 226323111 -16341242 + (CA)n Simple_repeat Simple_repeat 1 358 0 201 154 0 0 chr1 226323956 226323995 -16340358 + (TA)n Simple_repeat Simple_repeat 1 39 0 305 315 0 0 chr1 226323996 226324085 -16340268 - L1MC4 LINE L1 -1340 6702 6614 5762 152 19 6 chr1 226324107 226324410 -16339943 + L1MA4 LINE L1 5313 5611 -689 5148 63 63 3 chr1 226324410 226325033 -16339320 - PABL_A LTR ERV1 0 660 1 5762 152 19 6 chr1 226325033 226325694 -16338659 + L1MA4 LINE L1 5611 6289 -11 375 179 64 0 chr1 226326284 226326362 -16337991 - L1MB3 LINE L1 0 6183 6101 574 176 0 0 chr1 226326364 226326455 -16337898 - MER47B DNA MER2_type -1 417 327 1925 139 7 4 chr1 226326455 226326736 -16337617 + AluJo SINE Alu 1 282 -30 224 222 14 0 chr1 226326740 226326812 -16337541 + (TA)n Simple_repeat Simple_repeat 1 73 0 2030 151 18 35 chr1 226326824 226327162 -16337191 - MER47B DNA MER2_type -83 335 4 4202 165 54 25 chr1 226327162 226328374 -16335979 - L1MB3 LINE L1 -83 6100 4856 238 163 70 0 chr1 226329269 226329312 -16335041 + MER39B LTR ERV1 127 172 -481 * 3088 190 59 90 chr1 226329285 226329547 -16334806 + MER21A LTR ERV1 104 372 -559 2352 92 7 0 chr1 226329547 226329853 -16334500 - AluSx SINE Alu -4 308 1 3088 190 59 90 chr1 226329853 226330438 -16333915 + MER21A LTR ERV1 372 925 -6 259 251 76 7 chr1 226330468 226330570 -16333783 - MER39 LTR ERV1 -542 102 1 2317 177 41 48 chr1 226330571 226331273 -16333080 - L1MC2 LINE L1 -99 7686 5316 1904 144 0 4 chr1 226331279 226331557 -16332796 - AluJb SINE Alu -31 281 5 1620 205 0 3 chr1 226332794 226333102 -16331251 + AluJo SINE Alu 1 307 0 309 316 89 36 chr1 226333294 226333462 -16330891 - MIR SINE MIR -80 182 6 180 0 0 0 chr1 226333728 226333748 -16330605 + (T)n Simple_repeat Simple_repeat 1 20 0 417 346 54 57 chr1 226334584 226335327 -16329026 + L1MC4a LINE L1 10 750 -5369 576 288 60 43 chr1 226335413 226335760 -16328593 + L1MC4a LINE L1 897 1249 -4870 363 271 0 37 chr1 226336082 226336189 -16328164 + L1MC/D LINE L1 5696 5798 -2010 406 276 137 39 chr1 226336386 226336825 -16327528 + L1MC4a LINE L1 2123 2604 -3525 32751 107 11 55 chr1 226336926 226343352 -16321001 + L1PA7 LINE L1 12 6154 0 271 114 0 0 chr1 226343572 226343616 -16320737 - L1MA8 LINE L1 -17 6274 6231 330 239 86 69 chr1 226343624 226343856 -16320497 + L1MC4a LINE L1 2852 3093 -3036 2309 190 39 7 chr1 226343856 226344293 -16320060 + L1PB4 LINE L1 5699 6149 -7 330 239 86 69 chr1 226344293 226344408 -16319945 + L1MC4a LINE L1 3093 3205 -2924 802 134 41 6 chr1 226344440 226344611 -16319742 + GA-rich Low_complexity Low_complexity 1 177 0 2638 45 3 3 chr1 226344722 226345033 -16319320 - AluY SINE Alu 0 311 1 1548 278 77 27 chr1 226345058 226345721 -16318632 + L1MC4a LINE L1 3418 4113 -2016 407 267 73 15 chr1 226345868 226346074 -16318279 + L1MC4a LINE L1 4085 4302 -1827 850 247 161 66 chr1 226346111 226346346 -16318007 + L1MC4a LINE L1 5574 5785 -2006 1772 95 123 8 chr1 226346346 226346599 -16317754 + AluSg SINE Alu 1 282 -28 374 0 22 0 chr1 226346599 226346645 -16317708 + (CA)n Simple_repeat Simple_repeat 2 48 0 2120 135 0 7 chr1 226346655 226346958 -16317395 + AluSx SINE Alu 1 301 -11 850 247 161 66 chr1 226346958 226347301 -16317052 + L1MC4a LINE L1 5793 6220 -1571 2486 59 0 0 chr1 226347416 226347720 -16316633 + AluY SINE Alu 1 304 -7 1751 198 126 95 chr1 226347928 226348757 -16315596 + L1MC5 LINE L1 6636 7489 -472 401 268 18 67 chr1 226348769 226348933 -16315420 - MLT1J LTR MaLR -121 390 235 1175 192 12 31 chr1 226349737 226349773 -16314580 - L1MC2 LINE L1 0 6344 6309 1739 177 74 52 chr1 226349773 226350230 -16314123 + MLT1C LTR MaLR 1 467 0 1175 192 12 31 chr1 226350230 226350448 -16313905 - L1MC2 LINE L1 -35 6309 6095 1580 122 13 4 chr1 226350448 226350677 -16313676 - L1MC/D LINE L1 -667 5677 5447 2049 221 104 81 chr1 226350755 226351457 -16312896 - MER21B LTR ERV1 -145 718 1 3952 196 40 33 chr1 226351458 226351664 -16312689 - L1MC/D LINE L1 -743 5403 5200 1808 176 0 3 chr1 226351664 226351960 -16312393 - AluSx SINE Alu -6 306 12 3952 196 40 33 chr1 226351960 226352818 -16311535 - L1MC/D LINE L1 -946 5200 4391 540 279 79 26 chr1 226354020 226354249 -16310104 - MIR SINE MIR 0 262 22 191 283 75 0 chr1 226354336 226354389 -16309964 + L2 LINE L2 1873 1929 -1385 205 138 0 0 chr1 226354423 226354452 -16309901 + (TTC)n Simple_repeat Simple_repeat 2 30 0 522 238 61 42 chr1 226354492 226354706 -16309647 + L2 LINE L2 3090 3307 -6 2343 221 33 23 chr1 226354722 226354889 -16309464 + L1ME2 LINE L1 5551 5715 -449 917 198 67 126 chr1 226354889 226355383 -16308970 - MER4C LTR ERV1 0 465 1 2343 221 33 23 chr1 226355383 226355822 -16308531 + L1ME2 LINE L1 5715 6163 -1 2453 87 0 0 chr1 226355836 226356136 -16308217 + AluSg SINE Alu 1 300 -10 1977 115 62 0 chr1 226356215 226356503 -16307850 - AluSg SINE Alu -4 306 1 369 303 21 21 chr1 226356536 226356678 -16307675 + MIR SINE MIR 117 258 -4 2122 154 70 52 chr1 226357379 226357819 -16306534 - MER83 LTR ERV1 0 448 1 2052 95 78 3 chr1 226357928 226358211 -16306142 + AluSc SINE Alu 1 304 -5 524 249 73 0 chr1 226358646 226358811 -16305542 + MIR SINE MIR 86 262 0 201 179 36 36 chr1 226359301 226359357 -16304996 - MIR3 SINE MIR 0 208 153 2738 162 83 82 chr1 226359364 226359726 -16304627 - MER67C LTR ERV1 0 710 345 2069 128 19 19 chr1 226359726 226360038 -16304315 + AluJo SINE Alu 1 312 0 2738 162 83 82 chr1 226360038 226360384 -16303969 - MER67C LTR ERV1 -365 345 1 1590 149 96 31 chr1 226360576 226361002 -16303351 + LTR54 LTR ERV1 5 496 -2 1318 142 69 30 chr1 226361322 226361555 -16302798 + LTR47A LTR ERVL 211 452 0 180 0 0 0 chr1 226361869 226361889 -16302464 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2123 131 0 7 chr1 226361929 226362227 -16302126 - AluSx SINE Alu -16 296 1 34 0 0 0 chr1 226362227 226362261 -16302092 + AT_rich Low_complexity Low_complexity 1 34 0 1688 159 28 38 chr1 226362262 226362552 -16301801 - AluJo SINE Alu -25 287 1 2065 87 32 26 chr1 226362567 226362736 -16301617 - L1MA3 LINE L1 0 6305 6132 2256 113 0 0 chr1 226362736 226363037 -16301316 - AluSg SINE Alu -9 301 1 2065 87 32 26 chr1 226363037 226363176 -16301177 - L1MA3 LINE L1 -173 6132 5995 2885 224 208 60 chr1 226364973 226365505 -16298848 + L1MC4 LINE L1 6459 6911 -1131 2336 92 0 3 chr1 226365505 226365808 -16298545 + AluSp SINE Alu 1 302 -11 2885 224 208 60 chr1 226365808 226366014 -16298339 + L1MC4 LINE L1 6911 7085 -957 873 155 62 12 chr1 226366014 226366175 -16298178 + FAM SINE Alu 4 172 -3 2885 224 208 60 chr1 226366175 226366692 -16297661 + L1MC4 LINE L1 7085 7902 -140 2108 126 0 0 chr1 226366740 226367025 -16297328 + AluSx SINE Alu 2 286 -26 4583 163 12 46 chr1 226367391 226368938 -16295415 - L1MA8 LINE L1 -348 5943 4446 595 176 0 9 chr1 226368950 226369058 -16295295 - L1MA8 LINE L1 -2188 3958 3852 273 122 0 0 chr1 226370538 226370579 -16293774 - MER91 DNA MER1_type -152 44 4 1038 223 87 45 chr1 226370740 226371072 -16293281 + MLT1A1 LTR MaLR 1 346 -19 335 188 5 175 chr1 226371796 226372019 -16292334 + Charlie7 DNA MER1_type 2428 2612 0 286 358 53 11 chr1 226372246 226372436 -16291917 + MIR SINE MIR 2 199 -63 1945 163 7 100 chr1 226373257 226373531 -16290822 + MLT1B LTR MaLR 1 299 -91 2239 112 10 0 chr1 226373531 226373836 -16290517 + AluSx SINE Alu 1 308 -4 1945 163 7 100 chr1 226373836 226373853 -16290500 + MLT1B LTR MaLR 299 316 -74 1301 66 0 11 chr1 226373853 226374035 -16290318 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1945 163 7 100 chr1 226374035 226374171 -16290182 + MLT1B LTR MaLR 316 389 -1 4164 216 60 12 chr1 226374341 226375333 -16289020 - MER45B DNA AcHobo 0 1040 1 668 194 8 16 chr1 226375702 226375831 -16288522 + FLAM_A SINE Alu 1 128 -5 2008 173 52 28 chr1 226376151 226376573 -16287780 + MLT1D LTR MaLR 1 432 -73 2145 121 0 7 chr1 226376699 226377004 -16287349 - AluSx SINE Alu -9 303 1 221 214 29 0 chr1 226377432 226377502 -16286851 + (TA)n Simple_repeat Simple_repeat 2 73 0 843 165 0 0 chr1 226377575 226377708 -16286645 - FRAM SINE Alu -9 167 35 420 182 117 0 chr1 226377738 226377815 -16286538 - AluJ/FLAM SINE Alu -216 86 1 275 304 0 0 chr1 226377841 226377920 -16286433 - MIR SINE MIR -115 147 69 704 241 6 12 chr1 226378880 226379050 -16285303 - FRAM SINE Alu -5 171 3 489 337 31 5 chr1 226379052 226379248 -16285105 + MIR SINE MIR 48 248 -14 721 214 0 0 chr1 226379250 226379390 -16284963 - FLAM_C SINE Alu -3 140 1 2115 88 40 0 chr1 226379474 226379596 -16284757 + AluSx SINE Alu 1 117 -221 342 45 0 0 chr1 226379596 226379640 -16284713 + (CA)n Simple_repeat Simple_repeat 2 45 0 2115 88 40 0 chr1 226379640 226379844 -16284509 + AluSx SINE Alu 117 338 0 1707 164 0 60 chr1 226380481 226380798 -16283555 - AluJb SINE Alu -10 302 5 465 315 186 16 chr1 226380826 226381137 -16283216 + L2 LINE L2 988 1351 -1963 421 188 20 188 chr1 226381138 226381243 -16283110 - MER5B DNA MER1_type 0 178 120 2170 117 0 0 chr1 226381243 226381525 -16282828 + AluSx SINE Alu 6 287 -25 421 188 20 188 chr1 226381525 226381616 -16282737 - MER5B DNA MER1_type -58 120 15 2209 287 139 34 chr1 226381627 226382342 -16282011 + L2 LINE L2 1349 1988 -1325 2133 104 11 0 chr1 226382342 226382645 -16281708 + AluSx SINE Alu 2 307 0 2209 287 139 34 chr1 226382645 226383699 -16280654 + L2 LINE L2 1988 3313 0 526 302 83 32 chr1 226384269 226384521 -16279832 + HsTC2a DNA Tc2 1 265 -479 275 0 29 0 chr1 226384530 226384565 -16279788 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 335 302 169 0 chr1 226384574 226384763 -16279590 + L2 LINE L2 2714 2934 -380 1124 252 40 13 chr1 226384800 226385177 -16279176 + HsTC2a DNA Tc2 358 744 0 40 21 0 0 chr1 226385301 226385348 -16279005 + AT_rich Low_complexity Low_complexity 1 47 0 33 73 0 0 chr1 226387483 226387551 -16276802 + GC_rich Low_complexity Low_complexity 1 68 0 306 125 0 0 chr1 226387713 226387761 -16276592 + (CGG)n Simple_repeat Simple_repeat 3 50 0 22 80 0 0 chr1 226387814 226387864 -16276489 + GC_rich Low_complexity Low_complexity 1 50 0 200 197 13 40 chr1 226387912 226387988 -16276365 + (CGCGG)n Simple_repeat Simple_repeat 1 74 0 226 227 13 13 chr1 226388022 226388097 -16276256 + G-rich Low_complexity Low_complexity 6 80 0 26 64 0 0 chr1 226388249 226388296 -16276057 + GC_rich Low_complexity Low_complexity 1 47 0 245 278 11 11 chr1 226390838 226390928 -16273425 + (TATATG)n Simple_repeat Simple_repeat 2 91 0 253 229 82 0 chr1 226392680 226392741 -16271612 - L1ME1 LINE L1 -53 6113 6048 263 81 0 0 chr1 226392759 226392796 -16271557 + tRNA-Gly-GGA tRNA tRNA 1 37 -38 690 185 8 0 chr1 226392962 226393081 -16271272 - FLAM_A SINE Alu -9 124 5 233 165 107 58 chr1 226393119 226393184 -16271169 - L1ME4a LINE L1 -1 6120 6060 1986 133 38 46 chr1 226393184 226393551 -16270802 - THE1B LTR MaLR 0 364 1 233 165 107 58 chr1 226393551 226393606 -16270747 - L1ME4a LINE L1 -61 6060 5994 274 284 128 69 chr1 226393674 226393836 -16270517 - L1ME4a LINE L1 -253 5868 5717 2205 125 0 0 chr1 226393836 226394140 -16270213 - AluSq SINE Alu -9 304 1 274 284 128 69 chr1 226394140 226394312 -16270041 - L1ME4a LINE L1 -404 5717 5514 4164 121 14 8 chr1 226394410 226395048 -16269305 - L1PA16 LINE L1 -3 6163 5522 563 220 52 78 chr1 226395085 226395192 -16269161 - L1ME3 LINE L1 -21 6149 6041 1203 185 82 62 chr1 226395192 226395484 -16268869 + AluJo SINE Alu 3 300 -2 563 220 52 78 chr1 226395484 226395850 -16268503 - L1ME3 LINE L1 -129 6041 5588 1132 128 11 21 chr1 226395861 226396049 -16268304 - MER20 DNA MER1_type -32 187 2 313 129 265 56 chr1 226396050 226396140 -16268213 - L1ME3 LINE L1 -572 5598 5493 301 298 53 9 chr1 226396307 226396421 -16267932 - L2 LINE L2 -221 3051 2933 388 322 31 62 chr1 226396975 226397295 -16267058 + L2 LINE L2 2543 2852 -462 505 272 54 0 chr1 226397927 226398074 -16266279 - MIR SINE MIR -5 257 103 1749 151 3 33 chr1 226398696 226399000 -16265353 - AluJo SINE Alu -17 295 1 438 272 80 8 chr1 226400059 226400184 -16264169 - L2 LINE L2 -1 3312 3179 962 152 25 13 chr1 226400476 226400634 -16263719 - AluJb SINE Alu -24 288 129 955 147 129 6 chr1 226400828 226400998 -16263355 + MER6B DNA MER2_type 1 191 -19 1174 116 70 56 chr1 226401135 226401230 -16263123 + Tigger2a DNA MER2_type 1 93 -2615 195 42 0 0 chr1 226401230 226401254 -16263099 + (TCC)n Simple_repeat Simple_repeat 2 25 0 1174 116 70 56 chr1 226401254 226401296 -16263057 + Tigger2a DNA MER2_type 93 133 -2575 2420 73 0 0 chr1 226401296 226401596 -16262757 + AluY SINE Alu 1 300 -11 1174 116 70 56 chr1 226401596 226401672 -16262681 + Tigger2a DNA MER2_type 133 218 -216 714 167 18 0 chr1 226401668 226401782 -16262571 + Tigger2a DNA MER2_type 319 434 0 * 300 295 66 62 chr1 226402081 226402386 -16261967 - L1M4c LINE L1 -2215 4167 3862 421 243 108 60 chr1 226402476 226402661 -16261692 - L1M4c LINE L1 -2694 3688 3495 209 254 0 42 chr1 226402671 226402693 -16261660 + C-rich Low_complexity Low_complexity 1 22 -46 1607 154 7 43 chr1 226402693 226402992 -16261361 - AluJo SINE Alu -24 288 1 209 254 0 42 chr1 226402992 226403040 -16261313 + C-rich Low_complexity Low_complexity 22 68 0 511 285 81 36 chr1 226403212 226403605 -16260748 - L1M4c LINE L1 -3060 3322 2912 557 288 118 39 chr1 226403700 226404174 -16260179 - L1M4c LINE L1 -3644 2738 2225 4198 169 38 7 chr1 226404175 226405418 -16258935 - L1MB8 LINE L1 0 6184 4843 202 91 45 23 chr1 226405611 226405655 -16258698 + (CATA)n Simple_repeat Simple_repeat 3 47 0 1995 114 10 7 chr1 226406849 226407138 -16257215 + AluSq SINE Alu 1 290 -23 2491 58 0 13 chr1 226407645 226407957 -16256396 - AluY SINE Alu -3 308 1 2288 128 94 25 chr1 226408342 226408748 -16255605 - Tigger2a DNA MER2_type 0 434 1 1555 83 0 14 chr1 226408757 226408973 -16255380 - AluY SINE Alu 0 311 99 21 0 0 0 chr1 226408985 226409006 -16255347 + AT_rich Low_complexity Low_complexity 1 21 0 1891 99 38 14 chr1 226409041 226409334 -16255019 - AluSp SINE Alu -13 300 1 180 0 0 0 chr1 226409334 226409354 -16254999 + (TA)n Simple_repeat Simple_repeat 2 21 0 1228 209 40 30 chr1 226409354 226409651 -16254702 - AluJo SINE Alu -12 300 1 528 155 10 29 chr1 226409653 226409756 -16254597 - FLAM_A SINE Alu -12 130 30 22 0 0 0 chr1 226410058 226410080 -16254273 + AT_rich Low_complexity Low_complexity 1 22 0 1369 141 0 175 chr1 226411196 226411551 -16252802 + AluJo SINE Alu 1 293 -9 198 295 51 26 chr1 226413038 226413116 -16251237 + MIR SINE MIR 110 189 -73 898 181 38 0 chr1 226413125 226413285 -16251068 - FAM SINE Alu -9 166 1 788 280 94 52 chr1 226413434 226414161 -16250192 - L2 LINE L2 -15 3298 2491 593 232 51 11 chr1 226414688 226414865 -16249488 - MER53 DNA DNA 0 189 6 2174 148 38 0 chr1 226415412 226415785 -16248568 + MLT1B LTR MaLR 1 387 -3 330 328 22 22 chr1 226417510 226417690 -16246663 + G-rich Low_complexity Low_complexity 1 180 0 383 263 29 40 chr1 226417833 226418008 -16246345 + GA-rich Low_complexity Low_complexity 4 176 0 383 302 6 39 chr1 226418052 226418231 -16246122 + G-rich Low_complexity Low_complexity 4 176 0 * 423 222 22 70 chr1 226418207 226418392 -16245961 + GA-rich Low_complexity Low_complexity 4 179 0 * 500 247 6 40 chr1 226418259 226418929 -16245424 + G-rich Low_complexity Low_complexity 1 647 0 383 265 17 31 chr1 226418935 226419203 -16245150 + GA-rich Low_complexity Low_complexity 1 263 0 359 259 0 88 chr1 226419226 226419419 -16244934 + G-rich Low_complexity Low_complexity 4 179 0 2284 45 42 0 chr1 226420139 226420428 -16243925 - AluY SINE Alu -10 301 1 366 279 9 27 chr1 226420669 226420780 -16243573 + CT-rich Low_complexity Low_complexity 5 113 0 317 265 0 39 chr1 226420781 226420962 -16243391 + C-rich Low_complexity Low_complexity 1 174 0 240 306 0 0 chr1 226420980 226421052 -16243301 + CT-rich Low_complexity Low_complexity 2 73 0 1911 148 20 0 chr1 226422944 226423242 -16241111 + AluSx SINE Alu 1 304 -8 461 268 27 59 chr1 226423458 226423678 -16240675 - MER90 LTR ERV1 -6 608 396 348 217 61 26 chr1 226423938 226424053 -16240300 + MIR3 SINE MIR 45 163 -45 395 271 93 20 chr1 226424908 226425059 -16239294 + MER5B DNA MER1_type 1 162 -16 397 234 241 21 chr1 226425181 226425326 -16239027 + MER5A DNA MER1_type 13 189 0 459 157 130 17 chr1 226425358 226425473 -16238880 - MER5B DNA MER1_type -50 128 1 3069 120 37 8 chr1 226425789 226426272 -16238081 + MER34 LTR ERV1 1 497 -45 219 36 0 0 chr1 226426274 226426302 -16238051 + (CAA)n Simple_repeat Simple_repeat 2 29 0 908 152 0 0 chr1 226426575 226426720 -16237633 + FRAM SINE Alu 2 146 -30 580 279 162 14 chr1 226426950 226427172 -16237181 + MIR SINE MIR 8 262 0 344 238 181 19 chr1 226427181 226427286 -16237067 - MIR SINE MIR -108 154 33 1131 124 0 0 chr1 226427358 226427389 -16236964 + (TCC)n Simple_repeat Simple_repeat 1 208 0 1131 124 0 0 chr1 226427389 226427566 -16236787 + (TCC)n Simple_repeat Simple_repeat 2 178 0 1385 206 33 0 chr1 226427669 226427970 -16236383 - AluJo SINE Alu -1 311 1 346 175 167 33 chr1 226428165 226428285 -16236068 + MLT1K LTR MaLR 445 580 -8 609 304 93 56 chr1 226428286 226428556 -16235797 - L3 LINE CR1 -893 684 405 2840 158 0 6 chr1 226428823 226429291 -16235062 + MER4C LTR ERV1 1 465 0 537 195 188 26 chr1 226429413 226429567 -16234786 + MER5A DNA MER1_type 9 187 -2 1593 80 16 24 chr1 226429919 226430112 -16234241 - L1MA3 LINE L1 -32 6273 6081 2099 130 0 3 chr1 226430112 226430420 -16233933 - AluSx SINE Alu -4 308 2 1593 80 16 24 chr1 226430420 226430475 -16233878 - L1MA3 LINE L1 -224 6081 6027 425 270 139 70 chr1 226430553 226430812 -16233541 - HAL1 LINE L1 -254 2253 1977 479 304 49 18 chr1 226430849 226431073 -16233280 - HAL1 LINE L1 -475 2032 1802 309 263 198 35 chr1 226431080 226431312 -16233041 - LTR41 LTR ERVL -6 767 498 603 249 81 5 chr1 226431622 226431807 -16232546 - LTR41 LTR ERVL -574 199 1 788 282 8 28 chr1 226432159 226432407 -16231946 - ERVL LTR ERVL -324 5440 5198 498 258 18 36 chr1 226432567 226432734 -16231619 - ERVL LTR ERVL -575 5189 5026 * 2160 250 30 16 chr1 226432721 226433285 -16231068 - ERVL LTR ERVL -2976 2788 2217 386 172 16 0 chr1 226433316 226433380 -16230973 - ERVL LTR ERVL -3666 2098 2034 2152 116 0 0 chr1 226433382 226433684 -16230669 - AluSx SINE Alu -10 302 1 2023 260 53 38 chr1 226434131 226434860 -16229493 + L1ME3A LINE L1 4886 5602 -568 2727 160 38 18 chr1 226434860 226435355 -16228998 + MLT1D LTR MaLR 1 505 0 2023 260 53 38 chr1 226435355 226435565 -16228788 + L1ME3A LINE L1 5602 5857 -313 2705 180 74 96 chr1 226435565 226435897 -16228456 + MER63C DNA MER1_type 1 339 -721 2007 101 50 0 chr1 226435897 226436195 -16228158 + AluSq SINE Alu 1 313 0 2705 180 74 96 chr1 226436195 226436813 -16227540 + MER63C DNA MER1_type 339 930 0 2023 260 53 38 chr1 226436813 226436938 -16227415 + L1ME3A LINE L1 5857 5979 -191 304 165 0 139 chr1 226437086 226437165 -16227188 + MLT1H LTR MaLR 480 547 -2 566 257 43 37 chr1 226437183 226437389 -16226964 + L1ME3A LINE L1 5973 6170 0 443 296 66 72 chr1 226437409 226437996 -16226357 + L1ME4a LINE L1 5380 5963 -158 710 192 0 16 chr1 226438040 226438222 -16226131 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 612 227 0 0 chr1 226438268 226438444 -16225909 + (TAGG)n Simple_repeat Simple_repeat 2 177 0 834 189 0 0 chr1 226438487 226438667 -16225686 + (TAGG)n Simple_repeat Simple_repeat 1 180 0 321 247 74 56 chr1 226438667 226438829 -16225524 + L1ME4a LINE L1 5951 6115 -6 364 182 232 0 chr1 226438859 226438958 -16225395 - MER46C DNA MER2_type -203 135 14 651 218 0 15 chr1 226439555 226439688 -16224665 - FLAM_A SINE Alu -2 131 1 2119 92 31 0 chr1 226440408 226440700 -16223653 - AluSp SINE Alu -12 301 1 750 154 0 0 chr1 226440800 226440917 -16223436 + FRAM SINE Alu 47 163 -13 22 0 0 0 chr1 226441288 226441310 -16223043 + AT_rich Low_complexity Low_complexity 1 22 0 2235 165 163 9 chr1 226442386 226442834 -16221519 - MLT2B1 LTR ERVL 0 520 4 529 296 111 15 chr1 226442950 226443297 -16221056 - LTR16A1 LTR ERVL -9 448 87 403 261 112 80 chr1 226443427 226443676 -16220677 + L1MC4a LINE L1 5638 5894 -1914 28 61 0 0 chr1 226443691 226443740 -16220613 + AT_rich Low_complexity Low_complexity 1 49 0 1242 115 0 2 chr1 226444642 226444903 -16219450 + AluSq SINE Alu 2 311 -2 194 277 96 12 chr1 226445164 226445247 -16219106 + L2 LINE L2 1865 1954 -1360 374 343 76 76 chr1 226445279 226445556 -16218797 + L2 LINE L2 2996 3272 0 815 158 0 8 chr1 226446565 226446692 -16217661 + FLAM_C SINE Alu 1 126 -7 392 301 102 16 chr1 226446811 226446997 -16217356 + MIR SINE MIR 23 224 -38 339 154 28 196 chr1 226447334 226447477 -16216876 - MLT2F LTR ERVL -2 661 543 261 266 124 40 chr1 226447526 226447703 -16216650 - L1MCa LINE L1 -4534 1595 1441 2276 204 140 46 chr1 226447742 226448393 -16215960 - MER21B LTR ERV1 -57 806 95 365 211 11 63 chr1 226448489 226448584 -16215769 - MER21B LTR ERV1 -773 90 1 192 77 0 0 chr1 226448620 226448646 -16215707 + (TG)n Simple_repeat Simple_repeat 1 26 0 262 331 60 18 chr1 226448646 226448812 -16215541 - HAL1 LINE L1 -936 1571 1399 840 302 74 38 chr1 226448828 226449490 -16214863 - L1MCa LINE L1 -4885 1234 549 2194 211 34 11 chr1 226449584 226450064 -16214289 + MER41B LTR ERV1 100 466 -12 5724 114 23 2 chr1 226450187 226450987 -16213366 - MER4D LTR ERV1 0 903 87 2721 95 60 21 chr1 226450987 226451418 -16212935 + LTR7 LTR ERV1 1 448 -2 22468 104 13 10 chr1 226451420 226454701 -16209652 + HERVH LTR ERV1 1 3290 -4423 3467 107 4 6 chr1 226454691 226455194 -16209159 + HERVH LTR ERV1 3492 3993 -3720 * 25200 67 3 6 chr1 226455196 226458432 -16205921 + HERVH LTR ERV1 4488 7713 0 2646 102 58 21 chr1 226458432 226458864 -16205489 + LTR7 LTR ERV1 1 448 -2 587 111 20 20 chr1 226458866 226458965 -16205388 - MER4D LTR ERV1 -804 99 1 322 308 95 45 chr1 226458966 226459323 -16205030 - L1MCa LINE L1 -5733 386 12 483 221 29 10 chr1 226460462 226460566 -16203787 + LTR25 LTR ERV1 248 353 -441 296 195 51 153 chr1 226460545 226460663 -16203690 + MER61E LTR ERV1 84 189 -380 * 763 198 30 12 chr1 226460740 226460907 -16203446 + MER61E LTR ERV1 339 508 -61 432 0 0 0 chr1 226462285 226462333 -16202020 + (TG)n Simple_repeat Simple_repeat 2 49 0 1710 202 120 40 chr1 226462361 226462860 -16201493 - MLT1F LTR MaLR -3 539 1 609 209 75 0 chr1 226462888 226463022 -16201331 + MER104 DNA Tc2 35 178 -2 189 0 0 0 chr1 226463856 226463877 -16200476 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 453 281 6 6 chr1 226464130 226464290 -16200063 + L1M4 LINE L1 4925 5084 -1062 2159 154 32 64 chr1 226464733 226464987 -16199366 - MSTD LTR MaLR 0 396 158 1828 182 73 5 chr1 226464987 226465356 -16198997 + MSTD LTR MaLR 1 394 -2 2159 154 32 64 chr1 226465356 226465510 -16198843 - MSTD LTR MaLR -238 158 1 453 244 23 30 chr1 226466182 226466313 -16198040 + LTR67 LTR ERVL 6 135 -422 2396 95 0 3 chr1 226466931 226467236 -16197117 + AluSx SINE Alu 1 304 -8 1195 270 232 8 chr1 226468672 226469154 -16195199 + MLT1G1 LTR MaLR 4 593 -2 955 176 32 5 chr1 226469660 226469848 -16194505 - MER4C LTR ERV1 0 465 273 1512 171 18 97 chr1 226470034 226470502 -16193851 - MER4A LTR ERV1 -186 349 3 1524 181 183 2 chr1 226470560 226470919 -16193434 - LTR54B LTR ERV1 -2 496 49 195 42 0 0 chr1 226470919 226470943 -16193410 + (GTCTG)n Simple_repeat Simple_repeat 1 24 0 1524 181 183 2 chr1 226470943 226471003 -16193350 - LTR54B LTR ERV1 -449 49 1 1526 262 166 0 chr1 226471050 226471515 -16192838 + MLT1F LTR MaLR 1 542 0 419 302 67 0 chr1 226471579 226471728 -16192625 + MIR SINE MIR 104 262 0 241 280 11 32 chr1 226471852 226471945 -16192408 + MER34 LTR ERV1 41 131 -411 231 277 113 0 chr1 226472089 226472248 -16192105 + LTR48 LTR ERV1 570 746 -41 846 154 75 4 chr1 226473277 226473484 -16190869 + MSTC LTR MaLR 1 303 -125 1584 101 0 21 chr1 226473488 226473725 -16190628 - L1MB3 LINE L1 -198 5985 5754 4179 91 25 36 chr1 226473725 226474338 -16190015 + LTR9 LTR ERV1 1 606 -6 396 164 48 0 chr1 226474344 226474421 -16189932 - L1MB3 LINE L1 -414 5757 5675 1418 179 27 37 chr1 226476230 226476444 -16187909 - AluJb SINE Alu 0 312 124 198 0 0 0 chr1 226476444 226476466 -16187887 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1418 179 27 37 chr1 226476466 226476589 -16187764 - AluJb SINE Alu -188 124 1 2147 125 3 3 chr1 226476688 226476993 -16187360 - AluSx SINE Alu -7 305 1 982 140 6 34 chr1 226477025 226477203 -16187150 + L1MC1 LINE L1 6161 6333 0 23 33 0 0 chr1 226477276 226477306 -16187047 + AT_rich Low_complexity Low_complexity 1 30 0 449 307 39 13 chr1 226477795 226477948 -16186405 + MER91A DNA MER1_type 22 178 -18 1505 159 27 47 chr1 226478397 226478693 -16185660 - AluJo SINE Alu -21 291 2 2827 190 51 2 chr1 226478890 226479422 -16184931 + MER74A LTR ERVL 1 558 0 316 339 70 35 chr1 226479422 226479652 -16184701 - L2 LINE L2 -225 3047 2810 239 364 31 20 chr1 226479821 226480016 -16184337 + MLT1K LTR MaLR 220 416 -172 210 316 10 114 chr1 226480270 226480463 -16183890 - L2 LINE L2 -567 2747 2575 2254 113 0 0 chr1 226480694 226480986 -16183367 + AluSx SINE Alu 1 292 -20 304 319 7 65 chr1 226480996 226481134 -16183219 - L2 LINE L2 -556 2758 2629 * 528 243 35 28 chr1 226481131 226481275 -16183078 - L2 LINE L2 -2 3311 3167 713 147 34 12 chr1 226481276 226481603 -16182750 + (TCTA)n Simple_repeat Simple_repeat 1 334 0 2543 260 54 27 chr1 226481603 226482129 -16182224 - L2 LINE L2 -163 3150 2592 1115 159 23 41 chr1 226482129 226482349 -16182004 - MER20 DNA MER1_type -3 216 1 2543 260 54 27 chr1 226482349 226482799 -16181554 - L2 LINE L2 -721 2592 2156 1307 261 43 46 chr1 226482852 226483247 -16181106 + MLT1E LTR MaLR 74 467 -126 481 258 134 64 chr1 226483260 226483543 -16180810 - L2 LINE L2 -1171 2143 1841 237 33 0 0 chr1 226483556 226483586 -16180767 + (CA)n Simple_repeat Simple_repeat 2 31 0 479 326 112 12 chr1 226483631 226483962 -16180391 - L2 LINE L2 -779 2535 2172 1029 166 91 0 chr1 226483994 226484181 -16180172 + MER20 DNA MER1_type 16 219 0 488 247 56 40 chr1 226484389 226484770 -16179583 - Charlie2a DNA MER1_type -11 2851 733 246 288 0 14 chr1 226484768 226484841 -16179512 - Charlie2a DNA MER1_type -2388 474 403 * 1269 166 143 62 chr1 226484869 226485223 -16179130 + LTR54B LTR ERV1 1 396 -102 2569 69 0 0 chr1 226485223 226485528 -16178825 - AluSx SINE Alu -7 305 1 1269 166 143 62 chr1 226485528 226485594 -16178759 + LTR54B LTR ERV1 396 455 -43 444 309 13 0 chr1 226485613 226485762 -16178591 - Charlie2a DNA MER1_type -2628 154 4 2296 104 3 19 chr1 226485862 226486218 -16178135 + AluSx SINE Alu 1 351 0 517 252 13 26 chr1 226486383 226486538 -16177815 + L2 LINE L2 3159 3311 -2 310 374 21 48 chr1 226486547 226486800 -16177553 - L2 LINE L2 -1824 1490 1247 1673 212 106 41 chr1 226486800 226487405 -16176948 + LTR48B LTR ERV1 1 644 0 310 374 21 48 chr1 226487405 226487485 -16176868 - L2 LINE L2 -2067 1247 1166 217 356 42 17 chr1 226487809 226487927 -16176426 + L2 LINE L2 3122 3242 -30 1355 202 58 55 chr1 226488003 226488418 -16175935 - LTR37A LTR ERV1 0 426 11 313 184 102 7 chr1 226490155 226490240 -16174113 + MIR SINE MIR 28 120 -88 244 245 126 81 chr1 226490253 226490391 -16173962 + L1MC5 LINE L1 7641 7771 -190 2201 121 3 0 chr1 226490391 226490679 -16173674 + AluSp SINE Alu 1 292 -21 276 30 0 0 chr1 226490679 226490712 -16173641 + (TA)n Simple_repeat Simple_repeat 1 33 0 2201 121 3 0 chr1 226490712 226490729 -16173624 + AluSp SINE Alu 292 307 -6 244 245 126 81 chr1 226490729 226490851 -16173502 + L1MC5 LINE L1 7771 7913 -48 1342 159 9 5 chr1 226494813 226495033 -16169320 + AluJb SINE Alu 90 310 -2 2810 122 112 2 chr1 226495309 226495745 -16168608 - MER1A DNA MER1_type 0 529 46 713 316 136 55 chr1 226495846 226496834 -16167519 + L2 LINE L2 1639 2706 -608 617 144 0 0 chr1 226497004 226497094 -16167259 + Tigger7 DNA MER2_type 2389 2478 -9 318 317 31 19 chr1 226497208 226497369 -16166984 + MIR3 SINE MIR 43 205 -3 1070 135 68 48 chr1 226497382 226497589 -16166764 + MER2 DNA MER2_type 1 211 -134 28 0 0 0 chr1 226497599 226497627 -16166726 + AT_rich Low_complexity Low_complexity 1 28 0 344 239 92 9 chr1 226497700 226497809 -16166544 - MIR SINE MIR -58 150 33 499 274 183 20 chr1 226499134 226499440 -16164913 + L2 LINE L2 2911 3266 -47 5194 153 29 6 chr1 226499493 226500703 -16163650 - L1PB4 LINE L1 0 6156 4922 5175 135 47 45 chr1 226501621 226502611 -16161742 - L1MC2 LINE L1 -9 6335 5290 1622 156 64 36 chr1 226502619 226502978 -16161375 - L1MA9 LINE L1 -5 6307 5939 2091 134 0 10 chr1 226502979 226503292 -16161061 - AluSx SINE Alu -2 310 1 1282 208 71 50 chr1 226503415 226503752 -16160601 - MSTD LTR MaLR -14 382 39 31431 102 20 9 chr1 226503752 226508602 -16155751 - L1P3 LINE L1 -852 5609 687 26 30 0 0 chr1 226509593 226509626 -16154727 + AT_rich Low_complexity Low_complexity 1 33 0 217 250 0 0 chr1 226511373 226511421 -16152932 + L2 LINE L2 3207 3254 -18 308 24 24 0 chr1 226511792 226511833 -16152520 + (TCTCC)n Simple_repeat Simple_repeat 1 42 0 420 264 8 64 chr1 226512046 226512171 -16152182 + L2 LINE L2 3155 3272 0 30 83 0 0 chr1 226513120 226513192 -16151161 + AT_rich Low_complexity Low_complexity 1 72 0 416 297 17 8 chr1 226513335 226513453 -16150900 + L2 LINE L2 3193 3311 -2 1846 172 0 7 chr1 226513676 226513966 -16150387 + AluJb SINE Alu 1 288 -24 249 295 39 0 chr1 226514991 226515069 -16149284 + MIR SINE MIR 71 151 -111 263 274 44 44 chr1 226515290 226515403 -16148950 - MIR3 SINE MIR -8 200 88 407 311 104 55 chr1 226515592 226516080 -16148273 + L2 LINE L2 1966 2477 -837 204 323 42 52 chr1 226516743 226516839 -16147514 + L2 LINE L2 3005 3099 -173 21 0 0 0 chr1 226517368 226517389 -16146964 + AT_rich Low_complexity Low_complexity 1 21 0 230 313 12 12 chr1 226517987 226518070 -16146283 + GA-rich Low_complexity Low_complexity 4 86 0 193 283 33 0 chr1 226519318 226519378 -16144975 - L2 LINE L2 -6 3266 3205 202 376 0 21 chr1 226519758 226519851 -16144502 - L2 LINE L2 -225 3047 2957 1841 174 14 0 chr1 226520390 226520684 -16143669 - AluJb SINE Alu -14 298 1 190 229 62 0 chr1 226521564 226521612 -16142741 - MIR SINE MIR -93 169 119 256 333 156 26 chr1 226521855 226522239 -16142114 + L2 LINE L2 2544 2977 -337 945 124 8 0 chr1 226522320 226522449 -16141904 + FLAM_C SINE Alu 1 130 -3 207 288 38 12 chr1 226522563 226522643 -16141710 + L2 LINE L2 3191 3272 0 22 0 0 0 chr1 226523672 226523694 -16140659 + AT_rich Low_complexity Low_complexity 1 22 0 651 228 94 0 chr1 226523931 226524080 -16140273 - MIR SINE MIR -7 255 93 201 261 0 0 chr1 226524283 226524329 -16140024 - MIR3 SINE MIR -9 199 154 36 23 0 0 chr1 226525375 226525418 -16138935 + AT_rich Low_complexity Low_complexity 1 43 0 1397 178 31 48 chr1 226525427 226525719 -16138634 - AluJo SINE Alu -25 287 1 180 217 0 0 chr1 226526005 226526051 -16138302 + CT-rich Low_complexity Low_complexity 3 48 0 629 258 166 18 chr1 226526502 226527071 -16137282 - L1MEd LINE L1 -4712 1598 896 198 0 0 0 chr1 226528077 226528099 -16136254 + (ATG)n Simple_repeat Simple_repeat 1 22 0 207 303 148 31 chr1 226528422 226528584 -16135769 + MIR3 SINE MIR 21 201 -7 298 266 55 9 chr1 226531852 226531961 -16132392 - L1ME LINE L1 -305 5816 5703 271 219 0 16 chr1 226533104 226533168 -16131185 - MLT1J LTR MaLR -6 505 443 180 0 0 0 chr1 226533181 226533201 -16131152 + (A)n Simple_repeat Simple_repeat 1 20 0 2111 132 3 3 chr1 226533559 226533863 -16130490 - AluSx SINE Alu -8 304 1 221 325 219 0 chr1 226535796 226535947 -16128406 + MIR SINE MIR 2 185 -77 419 200 27 0 chr1 226538720 226538795 -16125558 - MER2 DNA MER2_type -1 344 268 739 211 8 0 chr1 226538822 226538950 -16125403 + FLAM_C SINE Alu 2 130 -13 26 0 0 0 chr1 226538951 226538977 -16125376 + AT_rich Low_complexity Low_complexity 1 26 0 536 95 0 0 chr1 226538977 226539051 -16125302 - MER2 DNA MER2_type -191 154 81 367 266 156 8 chr1 226539175 226539303 -16125050 - MIR SINE MIR -11 251 105 291 219 126 93 chr1 226539323 226539474 -16124879 + MER5A DNA MER1_type 4 159 -30 23 0 0 0 chr1 226540478 226540501 -16123852 + AT_rich Low_complexity Low_complexity 1 23 0 315 191 0 0 chr1 226540932 226540995 -16123358 + (TA)n Simple_repeat Simple_repeat 2 64 0 223 271 0 29 chr1 226542349 226542419 -16121934 + GA-rich Low_complexity Low_complexity 5 72 0 299 150 17 0 chr1 226542499 226542559 -16121794 + (TG)n Simple_repeat Simple_repeat 2 62 0 697 267 171 25 chr1 226544543 226545105 -16119248 - MLT2F LTR ERVL -19 644 1 300 240 270 0 chr1 226545258 226545358 -16118995 - MIR SINE MIR -109 153 27 2171 101 3 0 chr1 226545540 226545826 -16118527 + AluSx SINE Alu 18 304 -8 353 162 15 15 chr1 226546094 226546162 -16118191 - MLT1J1 LTR MaLR -141 305 238 1160 230 133 36 chr1 226546180 226546593 -16117760 - MLT1C LTR MaLR -9 458 6 1991 111 4 11 chr1 226547687 226547966 -16116387 + AluSq SINE Alu 1 277 -36 472 286 185 8 chr1 226548191 226548569 -16115784 + L1MEc LINE L1 270 714 -5682 5997 119 29 0 chr1 226548575 226549630 -16114723 - L1PA16 LINE L1 -16 6150 5084 3671 126 86 16 chr1 226549800 226550419 -16113934 + L1MC1 LINE L1 5663 6324 -9 716 265 59 40 chr1 226550450 226550703 -16113650 - MER46C DNA MER2_type 0 338 81 351 0 0 0 chr1 226550920 226550959 -16113394 + (TG)n Simple_repeat Simple_repeat 2 40 0 328 237 41 21 chr1 226551259 226551356 -16112997 - MER5A DNA MER1_type -77 112 14 1547 122 9 4 chr1 226553582 226553811 -16110542 - MER30 DNA MER1_type 0 230 1 1714 143 7 45 chr1 226554443 226554544 -16109809 - AluSx SINE Alu -14 298 195 2376 114 0 0 chr1 226554544 226554851 -16109502 - AluSg SINE Alu -3 307 1 1714 143 7 45 chr1 226554851 226555035 -16109318 - AluSx SINE Alu -117 195 24 690 303 52 93 chr1 226555256 226555849 -16108504 - L2 LINE L2 -473 2841 2288 1426 184 10 52 chr1 226555849 226556154 -16108199 - AluJo SINE Alu -20 292 1 690 303 52 93 chr1 226556154 226556356 -16107997 - L2 LINE L2 -1026 2288 2079 777 328 91 14 chr1 226556844 226557283 -16107070 + L2 LINE L2 2804 3276 -37 617 285 69 33 chr1 226557278 226557425 -16106928 - L2 LINE L2 -16 3297 3157 * 1746 116 58 61 chr1 226557425 226557559 -16106794 + MER2 DNA MER2_type 1 134 -210 2229 105 0 0 chr1 226557559 226557855 -16106498 - AluSx SINE Alu -16 296 1 1746 116 58 61 chr1 226557855 226558065 -16106288 + MER2 DNA MER2_type 134 344 0 617 285 69 33 chr1 226558065 226558222 -16106131 - L2 LINE L2 -156 3157 2982 339 293 49 16 chr1 226558411 226558534 -16105819 + L2 LINE L2 3185 3311 -2 996 237 37 19 chr1 226558636 226558851 -16105502 + MER58A DNA MER1_type 6 224 0 4894 70 3 8 chr1 226558963 226559602 -16104751 - L1PA6 LINE L1 0 6154 5519 451 71 0 0 chr1 226559605 226559661 -16104692 + Alu SINE Alu 225 280 -29 343 218 149 0 chr1 226559799 226559886 -16104467 - MER5A DNA MER1_type -80 109 10 12072 50 1 1 chr1 226560588 226562089 -16102264 + L1P LINE L1 905 2405 -3741 7898 20 1 0 chr1 226562189 226563687 -16100666 + L1PA3 LINE L1 4652 6151 -4 22 70 0 0 chr1 226563687 226563730 -16100623 + AT_rich Low_complexity Low_complexity 1 43 0 236 308 71 35 chr1 226564549 226564718 -16099635 - L1ME LINE L1 -564 5557 5383 1161 165 31 22 chr1 226565454 226565678 -16098675 - AluJo SINE Alu -6 306 81 1450 179 51 26 chr1 226567547 226567820 -16096533 + AluJo SINE Alu 2 281 -31 620 295 35 41 chr1 226567940 226568279 -16096074 - L1MC4a LINE L1 -1876 5932 5596 288 214 32 139 chr1 226568547 226568734 -16095619 - L2 LINE L2 -5 3308 3142 1043 189 20 10 chr1 226568863 226569059 -16095294 - AluJb SINE Alu -82 230 33 7827 18 11 5 chr1 226569787 226570909 -16093444 - L1PA3 LINE L1 -3 6152 5030 1003 184 45 5 chr1 226571713 226571914 -16092439 - MER3 DNA MER1_type 0 209 1 5215 148 30 45 chr1 226572739 226573802 -16090551 + L1MA9 LINE L1 5260 6306 -6 551 176 92 15 chr1 226574838 226574969 -16089384 + L1MA10 LINE L1 6179 6319 -15 247 308 0 9 chr1 226575580 226575687 -16088666 + (TA)n Simple_repeat Simple_repeat 2 107 0 450 204 0 0 chr1 226575744 226575842 -16088511 + (CATA)n Simple_repeat Simple_repeat 2 99 0 229 234 16 0 chr1 226575848 226575912 -16088441 + (TA)n Simple_repeat Simple_repeat 1 65 0 2121 151 12 15 chr1 226576409 226576747 -16087606 + MER7A DNA MER2_type 11 345 -1 2177 103 13 7 chr1 226576876 226577178 -16087175 - AluSx SINE Alu -8 304 1 274 362 33 57 chr1 226577321 226577531 -16086822 + MIR SINE MIR 23 227 -35 201 74 0 0 chr1 226578183 226578210 -16086143 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 2121 105 55 19 chr1 226578233 226578595 -16085758 + THE1C LTR MaLR 1 375 0 208 264 118 28 chr1 226578688 226578832 -16085521 - MIR SINE MIR -46 216 60 206 265 30 103 chr1 226579635 226579869 -16084484 - L2 LINE L2 -185 3087 2871 195 268 0 0 chr1 226580878 226580919 -16083434 + MIR SINE MIR 106 146 -116 2368 95 0 0 chr1 226581114 226581409 -16082944 + AluSx SINE Alu 1 295 -17 2174 119 3 0 chr1 226582553 226582846 -16081507 + AluSx SINE Alu 1 294 -18 2372 95 0 0 chr1 226582846 226583142 -16081211 + AluY SINE Alu 1 296 -15 420 280 26 48 chr1 226584377 226584587 -16079766 + MIR SINE MIR 41 250 -12 1724 162 28 7 chr1 226585234 226585524 -16078829 + AluJo SINE Alu 1 296 -16 212 272 123 0 chr1 226586284 226586365 -16077988 + L2 LINE L2 3223 3313 0 603 227 26 106 chr1 226588273 226588546 -16075807 - MIR SINE MIR -6 256 6 237 277 96 0 chr1 226589569 226589652 -16074701 - MIR SINE MIR -121 141 51 282 256 183 7 chr1 226591126 226591263 -16073090 + MER117 DNA MER1_type 1 161 -36 1576 173 57 14 chr1 226591513 226591796 -16072557 - AluJo SINE Alu -17 295 1 285 307 104 39 chr1 226591806 226591951 -16072402 + L1ME4a LINE L1 5713 5847 -274 2254 114 0 0 chr1 226591951 226592250 -16072103 + AluSg SINE Alu 1 299 -11 285 307 104 39 chr1 226592250 226592488 -16071865 + L1ME4a LINE L1 5847 6121 0 187 275 100 12 chr1 226592557 226592637 -16071716 + MIR3 SINE MIR 116 202 -6 234 0 0 0 chr1 226593467 226593493 -16070860 + (T)n Simple_repeat Simple_repeat 1 26 0 239 0 32 0 chr1 226593622 226593653 -16070700 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 336 200 15 0 chr1 226594550 226594615 -16069738 + MIR3 SINE MIR 120 185 -23 231 321 45 9 chr1 226594680 226594792 -16069561 + MIR SINE MIR 133 248 -14 420 310 14 0 chr1 226595458 226595600 -16068753 + MIR SINE MIR 89 232 -30 516 234 143 39 chr1 226597573 226597804 -16066549 - MIR SINE MIR -6 256 2 284 265 113 47 chr1 226598904 226599078 -16065275 - MIR SINE MIR -63 145 1 421 300 9 0 chr1 226600356 226600466 -16063887 + MER81 DNA DNA 1 111 -3 1133 129 11 0 chr1 226600519 226600697 -16063656 - LTR29 LTR ERV1 -59 563 384 243 88 0 0 chr1 226600862 226600896 -16063457 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1622 167 32 25 chr1 226600900 226601182 -16063171 - AluJb SINE Alu -27 285 2 1747 122 16 77 chr1 226601183 226601494 -16062859 - AluJo SINE Alu -15 297 6 205 215 84 75 chr1 226602219 226602326 -16062027 + MIR SINE MIR 28 135 -127 248 261 106 21 chr1 226602400 226602521 -16061832 - MIR SINE MIR -62 146 34 197 139 28 0 chr1 226602535 226602571 -16061782 + MIR SINE MIR 111 147 -115 255 198 132 28 chr1 226603400 226603506 -16060847 - L1ME4a LINE L1 -31 6090 5974 470 217 198 13 chr1 226603651 226603808 -16060545 + MER5A DNA MER1_type 4 189 0 1925 141 29 0 chr1 226603872 226604148 -16060205 + AluJo SINE Alu 13 296 -16 259 294 116 33 chr1 226604311 226604586 -16059767 - L1ME LINE L1 -559 5562 5265 2611 60 0 0 chr1 226606231 226606530 -16057823 - AluY SINE Alu -12 299 1 2254 98 3 10 chr1 226606980 226607287 -16057066 - AluSq SINE Alu -8 305 1 921 189 70 15 chr1 226607678 226607879 -16056474 + MER58A DNA MER1_type 3 214 -10 259 228 337 0 chr1 226607884 226607976 -16056377 - MER5A DNA MER1_type -25 164 42 447 299 30 12 chr1 226609874 226610038 -16054315 + LTR33 LTR ERVL 1 167 -354 275 271 8 42 chr1 226610274 226610392 -16053961 + LTR33 LTR ERVL 402 515 -6 212 299 26 0 chr1 226610481 226610558 -16053795 + GA-rich Low_complexity Low_complexity 4 82 0 461 361 86 3 chr1 226612943 226613245 -16051108 + L3 LINE CR1 1163 1489 -88 413 303 58 62 chr1 226613294 226613535 -16050818 - MIR SINE MIR 0 262 23 699 132 0 0 chr1 226664854 226664968 -15999385 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 892 158 20 0 chr1 226664972 226665118 -15999235 - MER8 DNA MER2_type -78 161 13 840 131 0 0 chr1 226665514 226665636 -15998717 + FLAM_C SINE Alu 15 136 -7 208 217 0 0 chr1 226665680 226665726 -15998627 + G-rich Low_complexity Low_complexity 2 47 0 282 125 0 109 chr1 226665785 226665849 -15998504 + AluY SINE Alu 201 257 -44 253 328 56 40 chr1 226666158 226666283 -15998070 + L2 LINE L2 3144 3270 -2 238 364 56 6 chr1 226668147 226668309 -15996044 + MIR SINE MIR 73 242 -20 534 310 13 0 chr1 226668852 226669007 -15995346 - MIR3 SINE MIR -16 192 36 352 366 0 0 chr1 226669760 226669894 -15994459 + (CA)n Simple_repeat Simple_repeat 1 134 0 302 295 39 26 chr1 226669828 226669984 -15994369 + (CATG)n Simple_repeat Simple_repeat 3 160 0 * 1468 143 44 0 chr1 226671140 226671391 -15992962 - L1MB3 LINE L1 -10 6173 5912 2539 183 7 9 chr1 226671990 226672432 -15991921 + MLT2B2 LTR ERVL 1 441 -74 5099 189 41 33 chr1 226672432 226673011 -15991342 + L1MC3 LINE L1 6224 6796 -989 363 96 0 0 chr1 226673011 226673063 -15991290 + (CATA)n Simple_repeat Simple_repeat 1 52 0 5099 189 41 33 chr1 226673063 226673113 -15991240 + L1MC3 LINE L1 6796 6844 -941 423 0 0 0 chr1 226673113 226673160 -15991193 + (CA)n Simple_repeat Simple_repeat 2 48 0 5099 189 41 33 chr1 226673160 226673277 -15991076 + L1MC3 LINE L1 6844 6958 -827 2218 117 0 0 chr1 226673277 226673599 -15990754 + AluSx SINE Alu 1 322 0 5099 189 41 33 chr1 226673599 226673985 -15990368 + L1MC3 LINE L1 6958 7369 -416 1142 168 0 0 chr1 226673985 226674176 -15990177 - AluJo SINE Alu -1 311 121 690 144 0 68 chr1 226674190 226674336 -15990017 - L1MA4 LINE L1 0 6300 6165 1212 178 42 4 chr1 226674337 226674573 -15989780 + L1MC3 LINE L1 7358 7602 -183 1688 143 7 24 chr1 226674573 226674866 -15989487 - THE1B LTR MaLR 0 364 77 514 278 85 17 chr1 226675056 226675232 -15989121 - MIR SINE MIR -73 189 2 1218 35 0 0 chr1 226675768 226675993 -15988360 + L1PA4 LINE L1 5997 6221 0 857 144 0 0 chr1 226676025 226676157 -15988196 + FRAM SINE Alu 38 169 -7 348 343 76 17 chr1 226676577 226676784 -15987569 - L1 LINE L1 -2645 3501 3294 1969 172 87 85 chr1 226677438 226677517 -15986836 - MLT2B1 LTR ERVL 0 520 443 603 0 0 0 chr1 226677517 226677584 -15986769 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 2219 154 73 15 chr1 226677591 226678001 -15986352 + Tigger2a DNA MER2_type 1 434 0 1969 172 87 85 chr1 226678001 226678431 -15985922 - MLT2B1 LTR ERVL -82 438 2 188 352 148 0 chr1 226679492 226679600 -15984753 - L2 LINE L2 -9 3263 3140 198 71 0 0 chr1 226680355 226680383 -15983970 + (TG)n Simple_repeat Simple_repeat 2 29 0 766 215 7 27 chr1 226680496 226680645 -15983708 + FRAM SINE Alu 1 146 -30 21 0 0 0 chr1 226680645 226680666 -15983687 + AT_rich Low_complexity Low_complexity 1 21 0 225 250 98 22 chr1 226682058 226682150 -15982203 - MIR SINE MIR -94 114 16 2312 122 3 0 chr1 226682629 226682941 -15981412 - AluSq SINE Alu 0 313 1 2403 97 0 0 chr1 226683536 226683835 -15980518 + AluY SINE Alu 1 299 -12 2154 177 0 8 chr1 226683935 226684303 -15980050 - MLT1A1 LTR MaLR 0 365 1 695 242 74 33 chr1 226684451 226684695 -15979658 - MLT1J2 LTR MaLR -8 442 189 2990 259 190 9 chr1 226685324 226686678 -15977675 + L2 LINE L2 1565 3162 -151 219 146 0 0 chr1 226686782 226686823 -15977530 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 311 315 94 60 chr1 226687234 226687469 -15976884 - MLT1K LTR MaLR -17 571 329 417 39 0 0 chr1 226687972 226688023 -15976330 + (TG)n Simple_repeat Simple_repeat 1 51 0 2401 94 0 16 chr1 226688751 226689069 -15975284 - AluSq SINE Alu 0 313 1 2220 100 3 3 chr1 226690635 226690924 -15973429 + AluSx SINE Alu 1 289 -23 1837 135 148 39 chr1 226691227 226691613 -15972740 + MSTA LTR MaLR 1 428 0 10224 138 24 23 chr1 226691613 226693262 -15971091 + MSTA-int LTR MaLR 1 1651 0 2390 150 67 0 chr1 226693262 226693663 -15970690 + MSTA LTR MaLR 1 428 0 2708 120 39 9 chr1 226694178 226694610 -15969743 - MER65A LTR ERV1 0 445 1 211 306 32 0 chr1 226694965 226695027 -15969326 - L2 LINE L2 -6 3266 3203 1658 184 33 23 chr1 226695749 226696053 -15968300 - AluJo SINE Alu -5 307 1 180 265 15 59 chr1 226697097 226697165 -15967188 - MER5A DNA MER1_type 0 189 125 1352 175 26 4 chr1 226697172 226697401 -15966952 + AluJb SINE Alu 76 309 -3 187 302 63 16 chr1 226697404 226697467 -15966886 - MER5A DNA MER1_type -94 95 30 266 248 132 66 chr1 226697526 226697647 -15966706 - MER5B DNA MER1_type -30 148 20 219 317 12 12 chr1 226697666 226697748 -15966605 - MER5B DNA MER1_type -6 172 91 360 235 68 8 chr1 226698235 226698367 -15965986 - L1ME4a LINE L1 0 6121 5982 1943 203 17 38 chr1 226698402 226698468 -15965885 - L1MB8 LINE L1 -112 6066 6001 981 226 16 152 chr1 226698468 226698559 -15965794 - L1MD2 LINE L1 -364 5995 5893 2020 121 7 36 chr1 226698559 226698864 -15965489 + AluSq SINE Alu 1 296 -17 981 226 16 152 chr1 226698864 226699333 -15965020 - L1MD2 LINE L1 -466 5893 5511 521 291 17 0 chr1 226699347 226699519 -15964834 - L1ME4a LINE L1 -274 5847 5673 206 311 11 56 chr1 226700954 226701044 -15963309 - MIR SINE MIR -167 95 10 2145 124 10 0 chr1 226702102 226702393 -15961960 + AluSq SINE Alu 1 294 -19 375 296 165 1 chr1 226702397 226702545 -15961808 - MIR3 SINE MIR -17 191 20 543 256 0 15 chr1 226703737 226703874 -15960479 + MER45A DNA AcHobo 16 150 -28 1936 140 26 19 chr1 226703951 226704230 -15960123 + AluSg SINE Alu 1 284 -26 397 0 0 0 chr1 226704230 226704274 -15960079 + (TAAA)n Simple_repeat Simple_repeat 4 168 0 27 0 0 0 chr1 226704274 226704301 -15960052 + AT_rich Low_complexity Low_complexity 1 27 0 190 237 0 0 chr1 226704804 226704842 -15959511 + MER5B DNA MER1_type 23 60 -118 511 282 13 0 chr1 226704944 226705093 -15959260 + MER5B DNA MER1_type 1 151 -27 251 306 113 31 chr1 226705101 226705421 -15958932 - L1MC5 LINE L1 -107 7854 7509 188 234 21 0 chr1 226705456 226705503 -15958850 + MER5B DNA MER1_type 122 169 -9 237 289 99 7 chr1 226705504 226705646 -15958707 - MIR3 SINE MIR -51 157 3 463 208 10 10 chr1 226706288 226706384 -15957969 - MIR SINE MIR -71 191 96 365 214 0 51 chr1 226706679 226706777 -15957576 + MER5A DNA MER1_type 9 101 -88 237 263 12 25 chr1 226707396 226707476 -15956877 + MIR SINE MIR 138 216 -46 902 153 0 25 chr1 226707651 226707814 -15956539 + FRAM SINE Alu 1 158 -18 2122 59 0 0 chr1 226707820 226708076 -15956277 + AluY SINE Alu 24 279 -32 932 37 7 22 chr1 226708077 226708213 -15956140 + (GAAA)n Simple_repeat Simple_repeat 2 135 0 800 207 20 0 chr1 226708569 226708719 -15955634 + MER5B DNA MER1_type 17 169 -9 1753 102 113 0 chr1 226710431 226710697 -15953656 + AluSq SINE Alu 1 296 -17 446 309 48 0 chr1 226711135 226711300 -15953053 + MIR SINE MIR 73 245 -17 436 292 23 8 chr1 226711592 226711722 -15952631 + MER94 DNA DNA 1 132 -2 2195 117 0 0 chr1 226711809 226712117 -15952236 + AluSg SINE Alu 1 308 -2 1151 110 23 0 chr1 226712129 226712302 -15952051 + AluSg/x SINE Alu 127 303 -9 4038 245 63 19 chr1 226712363 226714464 -15949889 + L1MEc LINE L1 1381 3535 -2680 2099 135 24 32 chr1 226714464 226714842 -15949511 - THE1C LTR MaLR 0 375 1 344 327 10 10 chr1 226715440 226715544 -15948809 + MIR SINE MIR 16 119 -89 512 185 75 68 chr1 226715992 226716138 -15948215 - LTR45B LTR ERV1 0 489 343 306 326 16 23 chr1 226717446 226717575 -15946778 + L2 LINE L2 3140 3267 -5 8380 219 59 28 chr1 226718397 226722195 -15942158 - L1MB4 LINE L1 -2 6247 980 2057 96 48 0 chr1 226722195 226722487 -15941866 - AluSx SINE Alu 0 312 7 8380 219 59 28 chr1 226722487 226722860 -15941493 - L1MB4 LINE L1 -5269 980 620 643 164 48 55 chr1 226722863 226723009 -15941344 - MLT1E2 LTR MaLR -469 157 13 240 206 143 0 chr1 226723309 226723372 -15940981 - LTR50 LTR ERVL -639 156 85 999 205 145 11 chr1 226723635 226723918 -15940435 - LTR50 LTR ERVL -451 344 24 654 164 8 9 chr1 226724550 226724682 -15939671 + L1MC2 LINE L1 6105 6242 -91 416 220 0 50 chr1 226724710 226724810 -15939543 + L1MC2 LINE L1 6216 6310 -34 2274 146 8 16 chr1 226725319 226725705 -15938648 + MER31A LTR ERV1 83 452 -33 2293 88 3 0 chr1 226725717 226726025 -15938328 - AluSc SINE Alu 0 309 1 651 194 40 0 chr1 226727005 226727129 -15937224 + FLAM_A SINE Alu 3 131 -2 193 259 0 56 chr1 226727528 226727582 -15936771 - MIR SINE MIR -200 62 12 729 117 90 0 chr1 226728150 226728261 -15936092 + 5S rRNA rRNA 1 121 0 280 270 48 79 chr1 226728311 226728437 -15935916 - L2 LINE L2 -7 3265 3144 414 261 45 68 chr1 226728743 226728919 -15935434 + MLT1F LTR MaLR 371 542 0 237 288 51 17 chr1 226729306 226729424 -15934929 - MIR SINE MIR -76 186 65 1852 125 3 17 chr1 226730472 226730767 -15933586 + AluSq SINE Alu 1 291 -22 203 356 78 0 chr1 226732789 226732879 -15931474 - L2 LINE L2 -30 3283 3187 546 290 32 11 chr1 226733308 226733494 -15930859 - MIR SINE MIR 0 262 73 318 286 121 0 chr1 226734518 226734609 -15929744 - MIR SINE MIR 0 262 161 266 366 56 7 chr1 226735490 226735632 -15928721 + MIR SINE MIR 47 195 -67 294 196 33 43 chr1 226736280 226736372 -15927981 - Charlie5 DNA MER1_type 0 2624 2534 3218 255 72 89 chr1 226736665 226736714 -15927639 - L1MEc LINE L1 -4036 2360 2312 198 0 0 0 chr1 226736714 226736736 -15927617 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2083 98 7 0 chr1 226736739 226737024 -15927329 - AluSg SINE Alu -23 287 1 3218 255 72 89 chr1 226737024 226737781 -15926572 - L1MEc LINE L1 -4086 2310 1541 1041 157 12 0 chr1 226737781 226737953 -15926400 - FAM SINE Alu -1 174 1 3218 255 72 89 chr1 226737953 226738044 -15926309 - L1MEc LINE L1 -4855 1541 1450 1491 164 14 45 chr1 226738044 226738336 -15926017 + AluJb SINE Alu 1 283 -29 3218 255 72 89 chr1 226738336 226738493 -15925860 - L1MEc LINE L1 -4946 1450 1292 594 0 0 0 chr1 226738493 226738559 -15925794 + (TG)n Simple_repeat Simple_repeat 2 67 0 3218 255 72 89 chr1 226738559 226739131 -15925222 - L1MEc LINE L1 -5104 1292 772 1975 110 0 30 chr1 226739131 226739432 -15924921 - AluSx SINE Alu -20 292 1 3218 255 72 89 chr1 226739432 226739964 -15924389 - L1MEc LINE L1 -5624 772 232 830 325 74 6 chr1 226739975 226740338 -15924015 - L1MEc LINE L1 -5981 415 28 536 227 14 43 chr1 226740348 226740489 -15923864 + L2 LINE L2 3150 3286 -27 453 303 78 59 chr1 226741361 226741448 -15922905 - L1ME3A LINE L1 -171 5999 5915 2615 127 21 30 chr1 226741448 226741880 -15922473 + MSTC LTR MaLR 1 428 0 453 303 78 59 chr1 226741880 226742212 -15922141 - L1ME3A LINE L1 -255 5915 5572 1094 215 9 9 chr1 226742242 226742461 -15921892 - MER20 DNA MER1_type 0 219 1 560 295 114 32 chr1 226742557 226743116 -15921237 - L1ME3A LINE L1 -807 5339 4735 965 64 0 0 chr1 226743240 226743365 -15920988 + AluY SINE Alu 172 296 -15 327 304 188 14 chr1 226743366 226743573 -15920780 - L1ME3A LINE L1 -1555 4591 4349 1735 153 96 30 chr1 226743576 226743941 -15920412 + MLT1B LTR MaLR 1 389 -1 225 0 0 0 chr1 226744093 226744118 -15920235 + (A)n Simple_repeat Simple_repeat 1 25 0 461 141 0 0 chr1 226748322 226748393 -15915960 - AluJb SINE Alu -94 218 148 4578 164 38 15 chr1 226749336 226750213 -15914140 + L1MB3 LINE L1 5284 6180 -3 3081 61 34 0 chr1 226750228 226750637 -15913716 + L1PB1 LINE L1 5728 6150 -1 28 0 0 0 chr1 226750637 226750665 -15913688 + AT_rich Low_complexity Low_complexity 1 28 0 2373 148 27 18 chr1 226752025 226752443 -15911910 + MSTA LTR MaLR 8 428 0 1572 145 13 66 chr1 226752986 226753289 -15911064 + AluJb SINE Alu 2 288 -24 2130 103 7 3 chr1 226753302 226753612 -15910741 + AluSp SINE Alu 1 311 -2 25 51 0 0 chr1 226753613 226753652 -15910701 + AT_rich Low_complexity Low_complexity 1 39 0 705 301 57 27 chr1 226753732 226754171 -15910182 - L1ME4a LINE L1 -149 5972 5521 2403 91 0 35 chr1 226754581 226754722 -15909631 + AluSg SINE Alu 1 145 -165 2872 13 0 0 chr1 226754722 226755030 -15909323 + AluYa5 SINE Alu 1 308 -3 2403 91 0 35 chr1 226755030 226755206 -15909147 + AluSg SINE Alu 145 307 -3 333 292 9 44 chr1 226755288 226755401 -15908952 - MIR SINE MIR -106 156 48 1686 146 81 21 chr1 226756255 226756590 -15907763 + L1MA4A LINE L1 5944 6298 -5 248 270 167 0 chr1 226758180 226758290 -15906063 + MIR SINE MIR 101 237 -25 192 245 0 20 chr1 226759948 226759997 -15904356 + L2 LINE L2 3221 3268 -4 493 158 84 7 chr1 226760239 226760365 -15903988 + L1MB2 LINE L1 5936 6065 -106 595 157 0 41 chr1 226760365 226760465 -15903888 + L1MA7 LINE L1 6171 6286 -5 797 144 0 0 chr1 226760479 226760611 -15903742 + L1MB3 LINE L1 6050 6181 -2 1068 264 110 19 chr1 226760699 226761156 -15903197 + MLT1H LTR MaLR 6 547 -2 585 264 33 16 chr1 226763886 226764080 -15900273 + MIR SINE MIR 3 197 -65 624 204 0 8 chr1 226764450 226764582 -15899771 - FLAM_A SINE Alu 0 142 12 204 266 117 43 chr1 226765174 226765268 -15899085 + L2 LINE L2 3213 3313 0 221 191 36 95 chr1 226765984 226766068 -15898285 + L3 LINE CR1 1399 1477 -100 182 213 43 64 chr1 226766112 226766159 -15898194 - L2 LINE L2 -60 3253 3208 626 200 0 67 chr1 226767900 226768065 -15896288 - MER63B DNA MER1_type 0 435 282 3981 152 16 34 chr1 226768066 226768812 -15895541 + L1MB4 LINE L1 5447 6179 -1 2150 157 88 48 chr1 226768812 226769291 -15895062 + L1MC1 LINE L1 5834 6331 -2 711 235 133 17 chr1 226769304 226769538 -15894815 - MER63B DNA MER1_type -141 295 35 3807 135 86 1 chr1 226770257 226770910 -15893443 + L1MC1 LINE L1 5626 6333 0 189 154 0 0 chr1 226771843 226771882 -15892471 + T-rich Low_complexity Low_complexity 1 39 0 522 234 51 7 chr1 226775641 226775778 -15888575 - MIR SINE MIR -110 152 10 21 36 0 0 chr1 226776017 226776045 -15888308 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 226776165 226776189 -15888164 + GC_rich Low_complexity Low_complexity 1 24 0 188 128 0 64 chr1 226776423 226776501 -15887852 + (CCCCG)n Simple_repeat Simple_repeat 2 74 0 2443 87 0 0 chr1 226778261 226778571 -15885782 + AluSg SINE Alu 1 310 0 1780 179 50 42 chr1 226778608 226778965 -15885388 + MLT1A1 LTR MaLR 5 364 -1 1265 234 17 40 chr1 226779030 226779380 -15884973 - MLT1A2 LTR MaLR -32 342 1 1984 116 5 143 chr1 226779731 226779972 -15884381 + MSTC LTR MaLR 1 157 -271 2431 97 0 0 chr1 226779972 226780283 -15884070 - AluY SINE Alu 0 311 1 1984 116 5 143 chr1 226780283 226780473 -15883880 + MSTC LTR MaLR 157 372 -56 636 165 158 0 chr1 226780473 226780606 -15883747 - L1PB4 LINE L1 -3 6153 6000 323 138 46 0 chr1 226780607 226780672 -15883681 + MSTC LTR MaLR 361 428 0 1928 144 0 48 chr1 226780715 226781027 -15883326 + AluJb SINE Alu 1 297 -15 247 234 180 45 chr1 226781147 226781258 -15883095 + L2 LINE L2 3188 3313 0 188 215 108 31 chr1 226781273 226781338 -15883015 - MIR SINE MIR -103 159 90 1699 183 0 14 chr1 226781681 226781960 -15882393 + AluJo SINE Alu 26 300 -12 496 215 68 126 chr1 226782537 226782657 -15881696 - MER5A DNA MER1_type -2 187 80 714 179 65 0 chr1 226782657 226782780 -15881573 - FLAM_C SINE Alu -2 131 1 496 215 68 126 chr1 226782780 226782850 -15881503 - MER5A DNA MER1_type -109 80 8 2375 90 3 0 chr1 226783687 226783988 -15880365 + AluY SINE Alu 1 302 -9 573 282 84 27 chr1 226784141 226784439 -15879914 - LTR16C LTR ERVL 0 491 177 283 210 118 84 chr1 226784592 226784711 -15879642 + MIR SINE MIR 107 229 -33 180 360 92 20 chr1 226784780 226784933 -15879420 + L2 LINE L2 3105 3268 -4 1173 167 19 14 chr1 226785806 226786022 -15878331 - Tigger1 DNA MER2_type 0 2418 2202 873 184 6 6 chr1 226786003 226786166 -15878187 - Tigger1 DNA MER2_type -2255 163 1 * 202 310 101 31 chr1 226786199 226786328 -15878025 + L2 LINE L2 2948 3085 -187 434 238 3 53 chr1 226787440 226787875 -15876478 + C-rich Low_complexity Low_complexity 1 413 0 228 332 57 71 chr1 226788851 226789062 -15875291 - MIR SINE MIR -48 214 7 395 320 120 6 chr1 226789088 226789263 -15875090 - L2 LINE L2 0 3313 3119 361 302 135 0 chr1 226789294 226789420 -15874933 - MIR SINE MIR -71 191 49 2342 90 23 0 chr1 226789728 226790027 -15874326 + AluSx SINE Alu 7 312 0 4135 129 58 4 chr1 226790052 226790764 -15873589 - LTR1 LTR ERV1 0 785 36 2578 60 0 0 chr1 226791253 226791554 -15872799 + AluY SINE Alu 1 301 -10 360 186 93 54 chr1 226791796 226791925 -15872428 + MIR SINE MIR 20 153 -109 2178 190 117 57 chr1 226792136 226792784 -15871569 + LTR8A LTR ERV1 34 720 -7 238 299 15 0 chr1 226793809 226793876 -15870477 - MER5A DNA MER1_type -113 76 9 252 274 0 0 chr1 226794142 226794204 -15870149 - MER115 DNA AcHobo -23 670 609 2394 95 3 0 chr1 226794490 226794796 -15869557 - AluSx SINE Alu -5 307 1 973 211 0 0 chr1 226795048 226795223 -15869130 - FAM SINE Alu 0 175 1 2306 110 0 49 chr1 226795300 226795628 -15868725 - AluSx SINE Alu 0 312 1 385 335 102 40 chr1 226795723 226796206 -15868147 - L2 LINE L2 -640 2674 2146 2422 71 0 3 chr1 226796206 226796502 -15867851 + AluSq SINE Alu 1 295 -18 385 335 102 40 chr1 226796502 226796615 -15867738 - L2 LINE L2 -1168 2146 2041 1716 143 170 24 chr1 226797548 226797919 -15866434 - MSTA LTR MaLR -2 426 2 977 202 0 5 chr1 226798411 226798599 -15865754 + AluJo SINE Alu 116 302 -10 529 263 163 65 chr1 226798685 226798734 -15865619 - L1ME4a LINE L1 -2 6119 6076 2342 98 0 0 chr1 226798734 226799030 -15865323 + AluSc SINE Alu 1 296 -13 529 263 163 65 chr1 226799030 226799318 -15865035 - L1ME4a LINE L1 -45 6076 5749 1978 127 0 7 chr1 226800506 226800813 -15863540 - AluSx SINE Alu 0 305 1 1419 167 4 20 chr1 226801021 226801266 -15863087 + AluJo SINE Alu 1 241 -71 570 332 97 0 chr1 226801377 226801603 -15862750 + MIR SINE MIR 15 262 0 385 301 96 14 chr1 226801609 226801755 -15862598 + L2 LINE L2 3115 3272 0 1713 154 40 30 chr1 226802046 226802345 -15862008 + 7SLRNA srpRNA srpRNA 16 317 -3 2683 151 30 78 chr1 226802421 226802997 -15861356 + LTR35 LTR ERV1 64 611 -7 303 208 19 75 chr1 226803332 226803438 -15860915 - U13 snRNA snRNA 0 104 5 707 165 0 9 chr1 226803519 226803634 -15860719 + FLAM_A SINE Alu 10 123 -19 2495 162 16 28 chr1 226803656 226804087 -15860266 - MSTB LTR MaLR 0 426 1 1540 199 25 7 chr1 226804091 226804377 -15859976 + AluJo SINE Alu 7 297 -15 1700 116 120 4 chr1 226804377 226804652 -15859701 + AluSg1 SINE Alu 1 307 -2 1935 177 0 0 chr1 226805107 226805412 -15858941 - AluJo SINE Alu -4 308 4 286 343 126 0 chr1 226805648 226805791 -15858562 - MIR3 SINE MIR -10 198 38 390 329 78 30 chr1 226806163 226806394 -15857959 + L2 LINE L2 3020 3261 -11 434 232 21 0 chr1 226806472 226806567 -15857786 + MER94 DNA DNA 2 98 -36 1360 231 77 18 chr1 226807036 226807426 -15856927 - Zaphod DNA AcHobo -13 4018 3606 970 209 117 23 chr1 226807443 226807991 -15856362 - Zaphod DNA AcHobo -3047 984 339 624 148 115 0 chr1 226808788 226808910 -15855443 + L1ME3A LINE L1 6027 6162 -8 209 250 29 59 chr1 226808910 226808978 -15855375 + L3 LINE CR1 1041 1106 -471 383 271 62 14 chr1 226809092 226809236 -15855117 + MIR3 SINE MIR 47 197 -11 414 238 70 64 chr1 226809869 226809999 -15854354 + MIR SINE MIR 84 217 -45 2344 69 0 31 chr1 226809999 226810317 -15854036 + AluSc SINE Alu 1 308 -1 414 238 70 64 chr1 226810317 226810358 -15853995 + MIR SINE MIR 217 256 -6 248 333 20 0 chr1 226811223 226811325 -15853028 + MER5A DNA MER1_type 4 107 -82 729 249 18 0 chr1 226811508 226811677 -15852676 + MER3 DNA MER1_type 1 125 -84 259 312 77 57 chr1 226811677 226811924 -15852429 - L2 LINE L2 -726 2588 2337 2724 13 0 3 chr1 226812165 226812467 -15851886 - AluYa5 SINE Alu -10 301 1 2707 199 75 67 chr1 226812550 226813327 -15851026 + MER21B LTR ERV1 12 794 -69 924 216 55 20 chr1 226813488 226813687 -15850666 - MER3 DNA MER1_type 0 209 4 237 341 184 0 chr1 226815196 226815351 -15849002 + MIR SINE MIR 28 207 -55 1937 147 0 14 chr1 226816098 226816390 -15847963 - AluJo SINE Alu -24 288 1 915 94 71 0 chr1 226817122 226817249 -15847104 + AluSq/x SINE Alu 1 136 -176 1899 113 0 4 chr1 226817249 226817505 -15846848 + AluSx SINE Alu 1 255 -57 216 344 0 0 chr1 226819083 226819144 -15845209 + L2 LINE L2 3253 3313 0 1271 197 76 8 chr1 226821278 226821542 -15842811 - AluJo SINE Alu -30 282 1 2847 116 27 36 chr1 226822088 226822293 -15842060 + Tigger2a DNA MER2_type 1 206 -2502 2327 87 7 0 chr1 226822293 226822593 -15841760 - AluSg SINE Alu -8 302 1 2847 116 27 36 chr1 226822593 226822825 -15841528 + Tigger2a DNA MER2_type 206 434 0 240 35 0 0 chr1 226823246 226823275 -15841078 + (TG)n Simple_repeat Simple_repeat 1 29 0 621 204 88 42 chr1 226823340 226823556 -15840797 + L1ME4a LINE L1 5663 5888 -233 189 0 0 0 chr1 226823678 226823699 -15840654 + (TC)n Simple_repeat Simple_repeat 2 22 0 282 215 124 73 chr1 226825139 226825317 -15839036 - MIR SINE MIR -63 145 9 1657 250 119 18 chr1 226825843 226826355 -15837998 + MER20B DNA MER1_type 25 588 -195 207 0 0 0 chr1 226827082 226827105 -15837248 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 277 146 0 0 chr1 226827131 226827179 -15837174 + AluSx SINE Alu 251 298 -4 * 836 183 209 48 chr1 226827173 226827441 -15836912 - MLT1A1 LTR MaLR -54 311 1 23 33 0 0 chr1 226829414 226829444 -15834909 + AT_rich Low_complexity Low_complexity 1 30 0 294 356 79 49 chr1 226829929 226830538 -15833815 + L2 LINE L2 2287 2913 -401 236 287 231 0 chr1 226830679 226830787 -15833566 + L2 LINE L2 3102 3234 -38 22 56 0 0 chr1 226830911 226830947 -15833406 + AT_rich Low_complexity Low_complexity 1 36 0 2513 51 0 0 chr1 226832236 226832532 -15831821 - AluY SINE Alu -15 296 1 2586 199 43 32 chr1 226834026 226834580 -15829773 - MER68 LTR ERV1 0 562 3 1841 278 120 22 chr1 226834912 226836618 -15827735 - L1ME3A LINE L1 -278 5892 4012 580 217 106 31 chr1 226836621 226836782 -15827571 - FAM SINE Alu -2 173 1 2380 72 7 0 chr1 226837223 226837514 -15826839 - AluY SINE Alu -18 293 1 561 148 65 0 chr1 226837815 226837923 -15826430 + MER3 DNA MER1_type 52 166 -43 1545 194 26 26 chr1 226837928 226838314 -15826039 + MER3 DNA MER1_type 2234 2619 0 2369 84 0 0 chr1 226838538 226838834 -15825519 + AluSc SINE Alu 1 296 -13 338 385 34 0 chr1 226839039 226839187 -15825166 + MIR3 SINE MIR 55 207 -1 421 231 22 0 chr1 226840359 226840450 -15823903 - FLAM_A SINE Alu -23 119 27 2209 117 0 0 chr1 226840874 226841173 -15823180 - AluSx SINE Alu -13 299 1 229 179 0 0 chr1 226842750 226842789 -15821564 + L2 LINE L2 3265 3303 -10 632 311 83 65 chr1 226843096 226844042 -15820311 - L2 LINE L2 0 3272 2293 21 36 0 0 chr1 226845632 226845660 -15818693 + AT_rich Low_complexity Low_complexity 1 28 0 254 322 0 22 chr1 226845681 226845771 -15818582 - MIR SINE MIR -50 212 125 311 221 15 0 chr1 226845854 226845922 -15818431 - L2 LINE L2 0 3313 3245 188 225 50 0 chr1 226846206 226846246 -15818107 - L2 LINE L2 -26 3287 3246 206 340 28 35 chr1 226846833 226846977 -15817376 + L2 LINE L2 2919 3061 -211 1673 188 0 23 chr1 226849194 226849503 -15814850 - AluJo SINE Alu -10 302 1 342 81 0 149 chr1 226851141 226851215 -15813138 - L1PA10 LINE L1 0 6168 6106 1146 30 8 0 chr1 226851215 226851349 -15813004 + L1PA4 LINE L1 5725 5859 -296 42 57 0 0 chr1 226852530 226852600 -15811753 + AT_rich Low_complexity Low_complexity 1 70 0 184 273 0 0 chr1 226853103 226853147 -15811206 + MIR SINE MIR 40 83 -179 512 250 8 123 chr1 226854465 226854725 -15809628 + MER102a DNA MER1_type 95 324 -6 269 243 66 44 chr1 226854868 226855004 -15809349 + L1ME4a LINE L1 5981 6119 -2 367 234 32 24 chr1 226855013 226855137 -15809216 - L1ME4a LINE L1 -18 6103 5979 1462 92 117 0 chr1 226855362 226855568 -15808785 + MER30 DNA MER1_type 1 230 0 347 315 130 8 chr1 226855782 226856036 -15808317 + L2 LINE L2 2473 2757 -557 630 226 38 84 chr1 226856046 226856307 -15808046 + MER112 DNA MER1_type 1 249 -11 1738 177 17 7 chr1 226856390 226856690 -15807663 - AluJo SINE Alu -9 303 1 294 361 77 16 chr1 226856732 226856926 -15807427 + L2 LINE L2 2905 3110 -162 220 309 0 0 chr1 226856940 226857008 -15807345 - L2 LINE L2 -3 3310 3243 33 25 0 0 chr1 226857277 226857317 -15807036 + AT_rich Low_complexity Low_complexity 1 40 0 2417 68 6 13 chr1 226857538 226857849 -15806504 - AluY SINE Alu -2 309 1 26 50 0 0 chr1 226858122 226858162 -15806191 + AT_rich Low_complexity Low_complexity 1 40 0 317 267 124 0 chr1 226860583 226860688 -15803665 + L1ME4a LINE L1 5791 5908 -213 26 0 0 0 chr1 226860766 226860792 -15803561 + AT_rich Low_complexity Low_complexity 1 26 0 530 227 208 24 chr1 226861348 226861555 -15802798 - MIR SINE MIR -5 257 13 273 350 31 0 chr1 226861931 226862028 -15802325 + MIR SINE MIR 46 145 -117 554 195 8 49 chr1 226962451 226962490 -15701863 + MER2 DNA MER2_type 228 267 -78 2317 104 0 13 chr1 226962490 226962799 -15701554 - AluSc SINE Alu -4 305 1 554 195 8 49 chr1 226962799 226962882 -15701471 + MER2 DNA MER2_type 267 345 0 190 227 134 101 chr1 226963414 226963533 -15700820 + MIR SINE MIR 70 192 -70 239 282 13 0 chr1 226964328 226964406 -15699947 - L1ME4a LINE L1 -332 5789 5711 183 80 0 0 chr1 226965200 226965225 -15699128 + (CA)n Simple_repeat Simple_repeat 2 26 0 644 185 16 48 chr1 226965795 226965984 -15698369 + MER53 DNA DNA 7 189 0 552 108 0 0 chr1 226966261 226966344 -15698009 - MLT1B-int LTR MaLR -1288 83 1 2326 123 46 0 chr1 226966344 226966717 -15697636 - MLT1B LTR MaLR 0 390 1 26 30 0 0 chr1 226967426 226967459 -15696894 + AT_rich Low_complexity Low_complexity 1 33 0 505 86 0 0 chr1 226967517 226967587 -15696766 - MSTD LTR MaLR 0 396 327 2127 45 0 0 chr1 226967587 226967832 -15696521 + AluY SINE Alu 1 245 -66 21 0 0 0 chr1 226969622 226969643 -15694710 + AT_rich Low_complexity Low_complexity 1 21 0 1912 71 0 13 chr1 226970866 226971105 -15693248 - AluSc SINE Alu -73 236 1 229 217 0 0 chr1 226971816 226971876 -15692477 + L1ME4a LINE L1 6061 6120 -1 415 290 71 66 chr1 226972456 226972639 -15691714 + MIR3 SINE MIR 1 154 -54 21 36 0 0 chr1 226972656 226972684 -15691669 + AT_rich Low_complexity Low_complexity 1 28 0 1400 150 4 12 chr1 226972873 226973120 -15691233 + L1PA13 LINE L1 5900 6144 -19 27 0 0 0 chr1 226973121 226973148 -15691205 + AT_rich Low_complexity Low_complexity 1 27 0 2094 141 77 5 chr1 226973707 226974096 -15690257 + L1MB4 LINE L1 5764 6180 0 1730 154 117 43 chr1 226974232 226974519 -15689834 - MSTD LTR MaLR 0 396 131 1985 136 3 7 chr1 226974519 226974821 -15689532 + AluSg SINE Alu 1 301 -9 2283 88 3 3 chr1 226974821 226975116 -15689237 + AluSq SINE Alu 1 295 -18 1730 154 117 43 chr1 226975116 226975196 -15689157 - MSTD LTR MaLR -264 132 1 1389 144 12 19 chr1 226975323 226975579 -15688774 + MER2 DNA MER2_type 1 254 -91 1970 238 19 68 chr1 226975683 226976355 -15687998 - L2 LINE L2 -1906 1408 770 211 143 0 0 chr1 226976365 226976400 -15687953 + MIR SINE MIR 218 252 -10 404 250 10 0 chr1 226976662 226976758 -15687595 - MER117 DNA MER1_type -100 97 1 669 249 8 73 chr1 226977857 226978102 -15686251 + MIR SINE MIR 29 257 -5 3839 140 29 7 chr1 226979047 226980068 -15684285 - L1M2 LINE L1 -628 5684 4641 1254 180 6 67 chr1 226980076 226980191 -15684162 - L1M2 LINE L1 -2106 4040 3920 2364 99 16 0 chr1 226980191 226980494 -15683859 + AluSx SINE Alu 3 310 -2 1254 180 6 67 chr1 226980494 226980706 -15683647 - L1M2 LINE L1 -2226 3920 3733 2283 109 0 0 chr1 226980822 226981126 -15683227 - AluSc SINE Alu -5 304 1 21 0 0 0 chr1 226981225 226981246 -15683107 + AT_rich Low_complexity Low_complexity 1 21 0 182 150 25 0 chr1 226981654 226981694 -15682659 + CT-rich Low_complexity Low_complexity 2 42 0 2205 208 35 4 chr1 226981871 226982323 -15682030 - MLT1C LTR MaLR -1 466 1 6442 89 27 2 chr1 226982359 226983337 -15681016 - L1MA2 LINE L1 0 6304 5303 32 57 0 0 chr1 226983576 226983629 -15680724 + AT_rich Low_complexity Low_complexity 1 53 0 7649 24 0 0 chr1 226984079 226985472 -15678881 - L1PA4 LINE L1 -3 6152 4761 826 185 58 37 chr1 226986766 226987009 -15677344 + L1MC4a LINE L1 5668 5915 -1893 1199 179 84 82 chr1 226987011 226987546 -15676807 - MER39 LTR ERV1 -3 684 5 21 0 0 0 chr1 226987561 226987582 -15676771 + AT_rich Low_complexity Low_complexity 1 21 0 270 376 165 0 chr1 226987730 226987996 -15676357 - L2 LINE L2 -556 2758 2449 247 164 0 73 chr1 226988078 226988133 -15676220 + L2 LINE L2 3222 3272 0 21 0 0 0 chr1 226989376 226989397 -15674956 + AT_rich Low_complexity Low_complexity 1 21 0 369 182 0 0 chr1 226989554 226989620 -15674733 - MLT1H LTR MaLR -3 546 481 261 0 0 0 chr1 226989691 226989720 -15674633 + (TG)n Simple_repeat Simple_repeat 1 29 0 538 258 23 0 chr1 226989966 226990094 -15674259 - MIR SINE MIR -92 170 40 229 191 15 29 chr1 226990130 226990198 -15674155 + MLT1H LTR MaLR 86 152 -397 264 175 18 11 chr1 226990206 226990286 -15674067 + MLT1I LTR MaLR 95 142 -267 339 235 78 0 chr1 226990425 226990527 -15673826 + MLT1H LTR MaLR 438 547 -2 2266 120 0 0 chr1 226990625 226990934 -15673419 + AluSx SINE Alu 1 309 -3 445 252 108 29 chr1 226992042 226992181 -15672172 + MIR SINE MIR 71 220 -42 399 316 151 5 chr1 226992483 226992695 -15671658 + MIR SINE MIR 12 254 -8 421 253 113 47 chr1 226994062 226994362 -15669991 + L1ME4a LINE L1 5691 6010 -111 25 0 0 0 chr1 226994379 226994404 -15669949 + AT_rich Low_complexity Low_complexity 1 25 0 5717 76 47 7 chr1 226994405 226995216 -15669137 - L1MA1 LINE L1 0 6302 5460 2423 89 23 0 chr1 226995216 226995558 -15668795 - L1PA10 LINE L1 -4 6164 5810 2680 129 4 4 chr1 226995558 226996166 -15668187 - L1MA1 LINE L1 -743 5403 4868 1659 116 9 0 chr1 226996166 226996390 -15667963 - AluSg/x SINE Alu -17 293 68 398 313 115 14 chr1 226996692 226996970 -15667383 - MLT1L LTR MaLR 0 615 310 303 146 0 0 chr1 226996970 226997025 -15667328 + (GA)n Simple_repeat Simple_repeat 2 56 0 254 279 62 62 chr1 226997469 226997677 -15666676 - MLT1J1 LTR MaLR 0 446 239 562 287 20 39 chr1 226997831 226998085 -15666268 - L2 LINE L2 -854 2460 2212 2349 93 0 19 chr1 226998748 226999061 -15665292 + AluSq SINE Alu 1 307 -6 298 361 85 0 chr1 226999182 226999312 -15665041 - L3 LINE CR1 -116 1461 1321 5449 118 7 0 chr1 226999735 227000579 -15663774 - L1PA15 LINE L1 -3 6162 5313 3951 119 2 30 chr1 227000645 227001286 -15663067 - L1PA15 LINE L1 -7 6158 5536 3073 223 56 17 chr1 227001387 227002258 -15662095 - L1MDa LINE L1 -2598 3942 3024 1361 163 17 4 chr1 227002258 227002491 -15661862 + MER46A DNA MER2_type 1 236 0 3073 223 56 17 chr1 227002491 227002629 -15661724 - L1MDa LINE L1 -3516 3024 2893 1192 61 0 25 chr1 227002630 227002793 -15661560 - L1PA14 LINE L1 -2 6159 6001 1138 194 166 2 chr1 227002833 227003231 -15661122 - L1MDa LINE L1 -3989 2551 2089 2312 70 7 0 chr1 227003240 227003526 -15660827 - AluSg SINE Alu -22 288 1 2260 111 38 22 chr1 227003554 227003923 -15660430 + THE1C LTR MaLR 1 375 0 2775 80 3 0 chr1 227003934 227004309 -15660044 + THE1C-int LTR MaLR 1142 1517 -63 1555 87 16 29 chr1 227004309 227004551 -15659802 + THE1C LTR MaLR 137 375 0 3708 182 51 53 chr1 227004556 227005635 -15658718 - L1MDa LINE L1 -4472 2068 992 364 296 104 0 chr1 227005745 227005870 -15658483 + L1M4 LINE L1 3375 3512 -2634 2160 94 17 13 chr1 227005953 227006118 -15658235 - AluSc SINE Alu -8 301 133 2497 74 0 0 chr1 227006118 227006429 -15657924 - AluY SINE Alu 0 311 1 2160 94 17 13 chr1 227006429 227006562 -15657791 - AluSc SINE Alu -176 133 2 1921 164 0 3 chr1 227006843 227007136 -15657217 + AluJo SINE Alu 1 292 -20 2165 113 0 3 chr1 227007656 227007949 -15656404 - AluSx SINE Alu -19 293 2 2488 156 58 21 chr1 227008026 227008993 -15655360 + L1MDa LINE L1 1301 2371 -4169 1442 184 51 7 chr1 227008987 227009281 -15655072 + L1MD2 LINE L1 5837 6143 -216 * 396 218 99 35 chr1 227009287 227009429 -15654924 + L1MD2 LINE L1 6199 6349 -10 28 61 0 0 chr1 227010220 227010269 -15654084 + AT_rich Low_complexity Low_complexity 1 49 0 520 218 4 117 chr1 227011245 227011477 -15652876 + MLT1F1 LTR MaLR 1 212 -355 986 177 16 0 chr1 227011485 227011671 -15652682 - MLT1B LTR MaLR 0 390 202 397 295 0 16 chr1 227011962 227012090 -15652263 - LTR16A1 LTR ERVL -4 453 328 1663 171 72 141 chr1 227012090 227012657 -15651696 + MLT1F LTR MaLR 1 528 -14 294 302 142 45 chr1 227012667 227012935 -15651418 - LTR16C LTR ERVL -126 365 72 183 80 0 0 chr1 227013820 227013845 -15650508 + (CG)n Simple_repeat Simple_repeat 1 25 0 * 234 0 0 0 chr1 227013844 227013870 -15650483 + (CA)n Simple_repeat Simple_repeat 1 26 0 1255 246 102 22 chr1 227013887 227014338 -15650015 + LTR33A LTR ERVL 3 489 -34 193 265 0 0 chr1 227014470 227014519 -15649834 - L2 LINE L2 -11 3261 3213 318 239 0 0 chr1 227014979 227015050 -15649303 + MLT1J LTR MaLR 110 180 -331 24 0 0 0 chr1 227015515 227015539 -15648814 + AT_rich Low_complexity Low_complexity 1 24 0 1969 102 99 34 chr1 227016177 227016529 -15647824 - THE1C LTR MaLR 0 375 1 285 278 125 58 chr1 227016898 227017211 -15647142 - MLT1L LTR MaLR -91 524 191 252 313 18 37 chr1 227017480 227017589 -15646764 - MIR SINE MIR -113 95 21 269 206 0 14 chr1 227018348 227018421 -15645932 + GA-rich Low_complexity Low_complexity 2 73 0 2459 68 7 3 chr1 227018508 227018818 -15645535 + AluY SINE Alu 1 311 0 448 202 20 0 chr1 227019445 227019544 -15644809 - L2 LINE L2 -60 3253 3153 2002 177 23 14 chr1 227019551 227019980 -15644373 - MLT1C LTR MaLR 0 467 35 1769 139 86 15 chr1 227019984 227020323 -15644030 + MLT1B LTR MaLR 28 390 0 975 201 25 7 chr1 227020584 227020868 -15643485 + L1 LINE L1 3055 3343 -2803 919 147 100 5 chr1 227020860 227021050 -15643303 + L1PA16 LINE L1 5953 6160 -6 * 2412 107 19 25 chr1 227021053 227021419 -15642934 - THE1B LTR MaLR 0 364 1 5491 102 13 6 chr1 227021428 227022271 -15642082 + L1PA15 LINE L1 5317 6165 0 523 239 40 40 chr1 227022773 227022949 -15641404 - MIR SINE MIR -10 252 77 816 320 29 72 chr1 227024842 227025261 -15639092 - L2 LINE L2 -3 3269 2869 1552 329 76 58 chr1 227025305 227026655 -15637698 + L2 LINE L2 1290 2662 -652 331 343 49 14 chr1 227026687 227026830 -15637523 + L1ME LINE L1 3 150 -5920 2256 115 3 0 chr1 227027027 227027323 -15637030 + AluSx SINE Alu 1 297 -15 471 265 0 15 chr1 227029485 227029611 -15634742 - MIR3 SINE MIR -54 154 49 571 263 160 0 chr1 227030949 227031105 -15633248 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chr1 227031238 227031259 -15633094 + AT_rich Low_complexity Low_complexity 1 21 0 241 327 44 35 chr1 227031545 227031658 -15632695 - L2 LINE L2 -4 3268 3155 2543 62 0 0 chr1 227032750 227033057 -15631296 + AluY SINE Alu 1 307 -4 483 147 0 119 chr1 227034015 227034124 -15630229 + MER33 DNA MER1_type 5 100 -224 711 353 50 12 chr1 227034226 227034625 -15629728 + L2 LINE L2 2888 3301 -12 786 122 67 0 chr1 227034660 227034824 -15629529 + MER33 DNA MER1_type 150 324 0 27 0 0 0 chr1 227034968 227034995 -15629358 + AT_rich Low_complexity Low_complexity 1 27 0 672 284 96 5 chr1 227035059 227035256 -15629097 + MIR SINE MIR 13 227 -35 23 0 0 0 chr1 227035270 227035293 -15629060 + AT_rich Low_complexity Low_complexity 1 23 0 2385 32 0 3 chr1 227035293 227035575 -15628778 - L1PA5 LINE L1 -7 6147 5867 208 385 98 0 chr1 227036122 227036244 -15628109 - L2 LINE L2 -5 3267 3134 320 328 102 8 chr1 227036321 227036449 -15627904 + L2 LINE L2 3133 3272 0 442 241 82 15 chr1 227036744 227036939 -15627414 - L1ME4a LINE L1 -80 6041 5834 387 331 74 0 chr1 227036939 227037096 -15627257 - MIR3 SINE MIR -55 153 13 2039 158 60 77 chr1 227037096 227037620 -15626733 - L1MA9 LINE L1 -3 6309 5778 8214 102 14 35 chr1 227037620 227037944 -15626409 - HSMAR2 DNA Mariner -2 1300 970 2291 82 20 0 chr1 227037944 227038237 -15626116 + AluSp SINE Alu 1 299 -14 8214 102 14 35 chr1 227038237 227038789 -15625564 - HSMAR2 DNA Mariner -332 970 407 2053 132 0 10 chr1 227038789 227039092 -15625261 - AluSg SINE Alu -10 300 1 2483 53 0 40 chr1 227039094 227039415 -15624938 - AluY SINE Alu -3 308 1 8214 102 14 35 chr1 227039415 227039861 -15624492 - HSMAR2 DNA Mariner -896 406 3 2039 158 60 77 chr1 227039861 227039918 -15624435 - L1MA9 LINE L1 -534 5778 5738 734 284 45 45 chr1 227040020 227040438 -15623915 + L1MC/D LINE L1 5386 5803 -538 4517 151 63 9 chr1 227040479 227041422 -15622931 - L1 LINE L1 -843 6722 5730 * 4941 187 41 16 chr1 227041420 227042492 -15621861 - L1 LINE L1 -6453 1112 14 258 197 14 14 chr1 227043425 227043496 -15620857 - MLT1I LTR MaLR -24 385 315 717 233 73 96 chr1 227043719 227044293 -15620060 - MER34B LTR ERV1 0 565 5 6520 69 2 41 chr1 227044664 227046046 -15618307 + L1PA14 LINE L1 4809 6157 -4 1615 214 79 27 chr1 227046290 227046734 -15617619 + MLT1C LTR MaLR 1 467 0 184 205 13 90 chr1 227047000 227047078 -15617275 + L2 LINE L2 3131 3202 -111 314 86 15 0 chr1 227047078 227047152 -15617201 - AluSq SINE Alu -111 192 153 308 209 55 44 chr1 227047152 227047211 -15617142 + L2 LINE L2 3221 3283 -30 2502 174 24 67 chr1 227047211 227047790 -15616563 + MLT2B3 LTR ERVL 1 554 0 308 209 55 44 chr1 227047790 227047821 -15616532 + L2 LINE L2 3283 3312 -1 304 294 235 6 chr1 227048132 227048302 -15616051 + MIR SINE MIR 20 228 -34 189 356 14 0 chr1 227049447 227049520 -15614833 + MIR SINE MIR 183 256 -6 516 221 0 74 chr1 227049794 227049916 -15614437 + MER2 DNA MER2_type 1 113 -232 1150 103 108 5 chr1 227050019 227050213 -15614140 - MSTA LTR MaLR -214 214 1 1931 171 34 3 chr1 227050213 227050565 -15613788 - MLT2B2 LTR ERVL -152 363 1 2134 125 0 0 chr1 227050998 227051293 -15613060 + AluSx SINE Alu 1 295 -17 261 0 0 0 chr1 227051293 227051322 -15613031 + (CA)n Simple_repeat Simple_repeat 2 30 0 275 179 53 11 chr1 227051559 227051654 -15612699 + GA-rich Low_complexity Low_complexity 2 100 0 893 240 68 42 chr1 227051654 227052199 -15612154 + HAL1 LINE L1 880 1438 -1069 1780 80 0 4 chr1 227052229 227052454 -15611899 - AluSc SINE Alu -13 296 73 848 241 70 34 chr1 227052755 227053195 -15611158 + HAL1 LINE L1 2029 2484 -23 21 0 0 0 chr1 227053207 227053228 -15611125 + AT_rich Low_complexity Low_complexity 1 21 0 657 258 47 38 chr1 227053416 227053629 -15610724 - MIR SINE MIR -46 216 2 552 277 116 56 chr1 227054516 227054718 -15609635 + L1ME3A LINE L1 5103 5326 -820 1870 161 11 11 chr1 227054718 227055067 -15609286 + L1PA16 LINE L1 5811 6159 -7 552 277 116 56 chr1 227055067 227055131 -15609222 + L1ME3A LINE L1 5326 5385 -761 254 237 17 0 chr1 227055131 227055190 -15609163 + (TA)n Simple_repeat Simple_repeat 1 60 0 1393 226 157 6 chr1 227055202 227055693 -15608660 + L1ME3A LINE L1 5383 5947 -223 247 256 62 69 chr1 227055727 227055887 -15608466 + L1ME3A LINE L1 5924 6082 -88 22 35 0 0 chr1 227055891 227055920 -15608433 + AT_rich Low_complexity Low_complexity 1 29 0 890 91 0 38 chr1 227056463 227056649 -15607704 + (TA)n Simple_repeat Simple_repeat 1 179 0 312 158 20 30 chr1 227056726 227056827 -15607526 + (TA)n Simple_repeat Simple_repeat 1 100 0 2177 111 0 0 chr1 227057341 227057659 -15606694 + AluSg SINE Alu 2 319 0 1502 218 118 41 chr1 227057674 227058141 -15606212 - MLT1D LTR MaLR -2 503 1 3013 104 28 13 chr1 227058266 227058728 -15605625 - L1PA16 LINE L1 0 6166 5698 289 180 109 39 chr1 227058863 227058991 -15605362 - Charlie7 DNA MER1_type -49 2563 2427 * 407 181 0 57 chr1 227058958 227059063 -15605290 - Charlie7 DNA MER1_type -2500 112 14 32 26 0 0 chr1 227059259 227059298 -15605055 + AT_rich Low_complexity Low_complexity 1 39 0 529 276 71 36 chr1 227061347 227061543 -15602810 + MIR SINE MIR 50 252 -10 2292 103 0 7 chr1 227062674 227062976 -15601377 + AluSx SINE Alu 1 300 -12 477 278 5 49 chr1 227064246 227064451 -15599902 - MLT1K LTR MaLR 0 588 393 280 264 56 0 chr1 227064837 227064909 -15599444 + MLT1J LTR MaLR 121 196 -315 382 192 44 157 chr1 227064965 227065194 -15599159 + MLT1J LTR MaLR 291 493 -18 962 198 68 65 chr1 227065641 227065982 -15598371 + MLT1H LTR MaLR 5 302 -228 2182 86 0 30 chr1 227066202 227066505 -15597848 - AluY SINE Alu -17 294 1 260 319 0 0 chr1 227066747 227066819 -15597534 - MIR3 SINE MIR -29 179 108 188 225 0 0 chr1 227066956 227066996 -15597357 + MIR SINE MIR 211 250 -12 334 182 57 11 chr1 227067283 227067371 -15596982 - MLT1H LTR MaLR -4 545 454 207 0 0 0 chr1 227067393 227067416 -15596937 + (TTG)n Simple_repeat Simple_repeat 2 24 0 431 252 4 9 chr1 227067617 227067738 -15596615 - MLT1H LTR MaLR -387 162 1 301 341 85 30 chr1 227068054 227068257 -15596096 + L1ME4a LINE L1 4990 5217 -929 752 229 114 30 chr1 227068257 227068493 -15595860 - MIR SINE MIR -3 259 4 301 341 85 30 chr1 227068493 227068594 -15595759 + L1ME4a LINE L1 5217 5311 -835 300 286 178 13 chr1 227068601 227068832 -15595521 + L1ME4a LINE L1 5322 5590 -531 258 156 0 0 chr1 227068842 227068887 -15595466 + (CA)n Simple_repeat Simple_repeat 1 45 0 462 254 91 30 chr1 227068900 227069230 -15595123 + L1ME4a LINE L1 5603 5952 -169 2349 199 47 31 chr1 227070558 227071175 -15593178 + L1ME1 LINE L1 5538 6164 -2 2586 49 0 10 chr1 227071439 227071746 -15592607 + AluY SINE Alu 1 304 -7 2379 92 3 0 chr1 227071751 227072054 -15592299 + AluSp SINE Alu 1 304 -9 196 333 15 111 chr1 227072118 227072253 -15592100 + MIR3 SINE MIR 3 124 -84 668 315 123 26 chr1 227072280 227072671 -15591682 - LTR33 LTR ERVL -69 452 24 29447 97 9 118 chr1 227073136 227075599 -15588754 - L1P4 LINE L1 -602 5563 2834 22337 25 0 0 chr1 227075599 227079031 -15585322 - L1PA4 LINE L1 0 6155 2724 29447 97 9 118 chr1 227079031 227082831 -15581522 - L1P4 LINE L1 -3331 2834 1 1971 239 34 6 chr1 227082832 227083454 -15580899 - L1P LINE L1 -3048 3098 2460 365 365 8 8 chr1 227083473 227083599 -15580754 - L3 LINE CR1 -406 1171 1046 1602 65 0 0 chr1 227083669 227083870 -15580483 - L1PA7 LINE L1 -13 6141 5941 23 54 0 0 chr1 227084201 227084238 -15580115 + AT_rich Low_complexity Low_complexity 1 37 0 1417 161 40 4 chr1 227084297 227084570 -15579783 - L1MB5 LINE L1 0 6174 5892 190 276 46 99 chr1 227084601 227084753 -15579600 + L2 LINE L2 3063 3206 -66 932 263 128 64 chr1 227085006 227085665 -15578688 + HAL1 LINE L1 1765 2465 -42 3073 105 45 0 chr1 227085996 227086445 -15577908 + MER1A DNA MER1_type 61 529 0 292 279 147 79 chr1 227086458 227086723 -15577630 + L2 LINE L2 2914 3196 -76 328 224 20 41 chr1 227086850 227086948 -15577405 - MER94 DNA DNA -19 115 20 22 0 0 0 chr1 227087508 227087530 -15576823 + AT_rich Low_complexity Low_complexity 1 22 0 1565 158 7 39 chr1 227087576 227087855 -15576498 + AluJb SINE Alu 30 299 -13 734 249 109 42 chr1 227088926 227089350 -15575003 + MER57A LTR ERV1 1 401 -2 263 195 11 35 chr1 227090148 227090235 -15574118 + A-rich Low_complexity Low_complexity 5 89 0 2072 230 94 72 chr1 227090767 227091372 -15572981 + HAL1b LINE L1 88 678 -670 2344 99 0 0 chr1 227091372 227091666 -15572687 + AluSx SINE Alu 1 294 -18 2072 230 94 72 chr1 227091666 227091819 -15572534 + HAL1b LINE L1 678 826 -522 2315 94 3 7 chr1 227091819 227092126 -15572227 + AluSx SINE Alu 1 306 -6 2072 230 94 72 chr1 227092126 227092599 -15571754 + HAL1b LINE L1 826 1347 -1 446 313 0 23 chr1 227092651 227092782 -15571571 - L2 LINE L2 -1 3271 3144 398 308 115 23 chr1 227092995 227093218 -15571135 + MIR SINE MIR 20 262 0 1865 155 4 0 chr1 227094504 227094781 -15569572 + AluSx SINE Alu 1 278 -34 203 88 29 0 chr1 227094791 227094825 -15569528 + (GGAGAA)n Simple_repeat Simple_repeat 4 38 0 216 0 0 0 chr1 227094827 227094851 -15569502 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 215 363 94 18 chr1 227094909 227095080 -15569273 - MIR SINE MIR 0 262 79 493 313 88 6 chr1 227096600 227097079 -15567274 + L1MB8 LINE L1 4186 4703 -1443 358 333 97 36 chr1 227097108 227097417 -15566936 + L1MB8 LINE L1 4936 5263 -883 1153 281 88 12 chr1 227097563 227098064 -15566289 + L1MC4a LINE L1 5475 6013 -1795 770 141 0 32 chr1 227098115 227098271 -15566082 + MSTD LTR MaLR 1 151 -245 542 124 0 9 chr1 227098297 227098410 -15565943 + (TC)n Simple_repeat Simple_repeat 2 113 0 4310 147 16 34 chr1 227098520 227099305 -15565048 + L1MB8 LINE L1 5342 6112 -66 1865 145 10 40 chr1 227099305 227099608 -15564745 - AluJb SINE Alu -16 296 3 4310 147 16 34 chr1 227099608 227099673 -15564680 + L1MB8 LINE L1 6112 6177 -1 501 240 57 11 chr1 227100320 227100495 -15563858 - L1MC4 LINE L1 -151 7891 7709 214 183 197 28 chr1 227100674 227100745 -15563608 + L2 LINE L2 3230 3312 -1 1040 30 0 30 chr1 227101380 227101515 -15562838 + L1PA5 LINE L1 6024 6154 0 377 305 87 28 chr1 227102184 227102505 -15561848 - L1M4 LINE L1 -1310 4836 4497 782 329 73 8 chr1 227102538 227103337 -15561016 - L1M4 LINE L1 -1806 4340 3490 21 0 0 0 chr1 227103444 227103465 -15560888 + AT_rich Low_complexity Low_complexity 1 21 0 2133 125 3 0 chr1 227103814 227104111 -15560242 - AluSx SINE Alu -14 298 1 213 39 0 0 chr1 227105021 227105047 -15559306 + (T)n Simple_repeat Simple_repeat 1 26 0 1183 111 0 0 chr1 227105062 227105215 -15559138 - AluSq SINE Alu -160 153 1 196 295 135 56 chr1 227105401 227105689 -15558664 + L2 LINE L2 2814 3124 -148 219 146 0 0 chr1 227106216 227106257 -15558096 + (TG)n Simple_repeat Simple_repeat 1 41 0 204 141 127 0 chr1 227106833 227106904 -15557449 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 261 290 16 0 chr1 227107379 227107441 -15556912 - MER91 DNA MER1_type -77 63 1 249 57 0 0 chr1 227108550 227108585 -15555768 + (A)n Simple_repeat Simple_repeat 1 35 0 397 325 8 0 chr1 227108905 227109028 -15555325 + L3b LINE CR1 1114 1237 -346 268 22 22 43 chr1 227109289 227109335 -15555018 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 568 279 9 0 chr1 227109392 227109503 -15554850 + L2 LINE L2 3139 3250 -22 573 288 56 28 chr1 227109506 227109791 -15554562 - L1ME4a LINE L1 -159 5962 5670 910 265 117 25 chr1 227110960 227111027 -15553326 + L2 LINE L2 2921 2980 -333 2372 229 19 14 chr1 227111027 227111543 -15552810 - LTR40a LTR ERVL 0 519 1 910 265 117 25 chr1 227111543 227111834 -15552519 + L2 LINE L2 2980 3312 -1 23 0 0 0 chr1 227111893 227111916 -15552437 + AT_rich Low_complexity Low_complexity 1 23 0 608 186 146 106 chr1 227112160 227112359 -15551994 + MER63A DNA MER1_type 1 207 -3 890 175 55 27 chr1 227112519 227112702 -15551651 - MER5A DNA MER1_type 0 189 2 1045 152 5 76 chr1 227114117 227114315 -15550038 + MER5A DNA MER1_type 3 186 -3 506 177 0 0 chr1 227115002 227115081 -15549272 + Tigger5 DNA MER2_type 1 79 -2244 368 218 0 26 chr1 227115083 227115161 -15549192 - Tigger5 DNA MER2_type -6 2317 2242 286 267 0 0 chr1 227115157 227115217 -15549136 + Tigger5 DNA MER2_type 2264 2323 0 * 606 279 11 11 chr1 227115323 227115502 -15548851 + MIR SINE MIR 72 250 -12 233 250 21 0 chr1 227115538 227115634 -15548719 + (CATA)n Simple_repeat Simple_repeat 3 100 0 517 312 80 24 chr1 227116157 227116407 -15547946 + L2 LINE L2 2809 3072 -200 301 195 92 69 chr1 227116435 227116522 -15547831 + L2 LINE L2 3219 3307 -6 228 288 0 0 chr1 227117339 227117398 -15546955 + L2 LINE L2 3214 3272 0 589 204 204 7 chr1 227117666 227117808 -15546545 + MER5A DNA MER1_type 20 189 0 512 252 73 83 chr1 227117926 227118144 -15546209 - LTR67 LTR ERVL -7 550 335 670 200 112 35 chr1 227118172 227118342 -15546011 - MER63A DNA MER1_type -27 183 1 531 231 19 0 chr1 227118500 227118608 -15545745 - MER5B DNA MER1_type 0 178 69 538 89 12 16 chr1 227118735 227118839 -15545514 - L1M1 LINE L1 -606 5549 5447 260 226 16 0 chr1 227118840 227118902 -15545451 - MER5B DNA MER1_type -112 66 4 386 133 89 33 chr1 227119169 227119259 -15545094 + MER5A DNA MER1_type 27 121 -68 305 217 61 70 chr1 227119179 227119294 -15545059 - MER5A DNA MER1_type -26 163 50 * 223 279 211 0 chr1 227119826 227119930 -15544423 - MIR SINE MIR -97 165 40 345 269 124 35 chr1 227120402 227120547 -15543806 - MIR SINE MIR -91 171 14 527 205 87 39 chr1 227120655 227120782 -15543571 - MER5B DNA MER1_type -45 133 1 357 281 55 34 chr1 227121117 227121263 -15543090 + MIR SINE MIR 112 260 -2 21 0 0 0 chr1 227121571 227121592 -15542761 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr1 227121948 227121975 -15542378 + (A)n Simple_repeat Simple_repeat 1 27 0 214 263 26 26 chr1 227122587 227122663 -15541690 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2437 89 0 3 chr1 227123278 227123582 -15540771 - AluSx SINE Alu -9 303 1 21 0 0 0 chr1 227124558 227124579 -15539774 + AT_rich Low_complexity Low_complexity 1 21 0 459 281 109 21 chr1 227124940 227125132 -15539221 + MIR SINE MIR 9 217 -45 244 308 112 0 chr1 227125379 227125486 -15538867 + L2 LINE L2 3194 3312 -1 203 282 0 0 chr1 227127698 227127737 -15536616 - L2 LINE L2 -24 3248 3210 1565 209 133 27 chr1 227128023 227128430 -15535923 + MLT1J2 LTR MaLR 1 450 0 687 228 13 27 chr1 227128477 227128626 -15535727 + L2 LINE L2 3167 3313 0 2204 110 3 0 chr1 227128874 227129173 -15535180 + AluSx SINE Alu 1 300 -12 1299 237 84 69 chr1 227129270 227129747 -15534606 + LTR33A LTR ERVL 1 484 -39 1834 184 14 35 chr1 227129747 227130116 -15534237 + MLT1A2 LTR MaLR 1 361 -13 270 196 0 0 chr1 227130109 227130155 -15534198 + LTR33A LTR ERVL 478 523 0 * 875 342 130 25 chr1 227130164 227130927 -15533426 + L2 LINE L2 1930 2772 -542 706 242 99 60 chr1 227131067 227131319 -15533034 - MLT1J2 LTR MaLR -157 293 32 253 204 172 47 chr1 227131710 227131822 -15532531 - MIR SINE MIR -67 141 36 198 0 0 0 chr1 227132248 227132270 -15532083 + (GA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr1 227132269 227132291 -15532062 + (TG)n Simple_repeat Simple_repeat 2 23 0 318 301 45 32 chr1 227133508 227133664 -15530689 + MIR SINE MIR 99 256 -6 422 190 13 0 chr1 227134142 227134221 -15530132 - MER116 DNA Mariner 0 80 1 1234 186 23 5 chr1 227134534 227134749 -15529604 - MER20 DNA MER1_type 0 219 1 198 0 0 0 chr1 227135400 227135422 -15528931 + (T)n Simple_repeat Simple_repeat 1 22 0 703 257 6 23 chr1 227137167 227137338 -15527015 + MER5B DNA MER1_type 7 174 -4 1124 145 56 0 chr1 227137389 227137568 -15526785 - MER5A DNA MER1_type 0 189 1 2350 177 204 25 chr1 227138266 227138821 -15525532 - MLT1E1 LTR MaLR 0 654 1 23 33 0 0 chr1 227140304 227140334 -15524019 + AT_rich Low_complexity Low_complexity 1 30 0 1532 191 78 72 chr1 227141142 227141338 -15523015 - L1MC5 LINE L1 -435 7526 7333 1133 181 38 9 chr1 227141338 227141548 -15522805 + MER20 DNA MER1_type 2 217 -2 1532 191 78 72 chr1 227141548 227141838 -15522515 - L1MC5 LINE L1 -628 7333 7037 533 291 44 11 chr1 227141839 227142030 -15522323 + MIR SINE MIR 8 204 -58 3439 237 87 57 chr1 227142034 227142352 -15522001 - L2 LINE L2 -1 3312 3005 1982 102 3 14 chr1 227142352 227142635 -15521718 + AluSg SINE Alu 1 280 -30 3439 237 87 57 chr1 227142635 227143686 -15520667 - L2 LINE L2 -308 3005 1914 2138 167 5 5 chr1 227243693 227244070 -15420283 + MER65A LTR ERV1 69 445 0 1078 99 0 0 chr1 227244769 227244910 -15419443 + FRAM SINE Alu 1 140 -36 216 0 0 0 chr1 227247938 227247962 -15416391 + (CCG)n Simple_repeat Simple_repeat 2 25 0 984 167 50 59 chr1 227249261 227249482 -15414871 + MER20 DNA MER1_type 1 219 0 2870 3 0 0 chr1 227251533 227251835 -15412518 - AluYa5 SINE Alu -9 302 1 828 189 0 0 chr1 227251836 227251968 -15412385 - AluJo/FLAM SINE Alu -170 132 1 1803 151 3 41 chr1 227252170 227252487 -15411866 - AluJo SINE Alu -7 305 1 337 270 97 30 chr1 227252498 227252745 -15411608 - L1MC/D LINE L1 -422 5699 5548 2117 122 14 3 chr1 227253267 227253563 -15410790 - AluSx SINE Alu -8 304 6 2174 130 3 9 chr1 227253577 227253892 -15410461 - AluSp SINE Alu 0 313 1 2365 110 3 0 chr1 227254191 227254499 -15409854 - AluSp SINE Alu -4 309 1 832 200 11 43 chr1 227254902 227255087 -15409266 + MER58A DNA MER1_type 37 215 -9 441 275 168 7 chr1 227255119 227255268 -15409085 + MER5A DNA MER1_type 10 182 -7 296 207 134 12 chr1 227255919 227256001 -15408352 - MIR3 SINE MIR -41 167 76 1525 201 30 10 chr1 227256028 227256332 -15408021 + AluJo SINE Alu 3 312 0 268 321 88 56 chr1 227257262 227257477 -15406876 - L2 LINE L2 0 3313 3092 670 222 0 0 chr1 227257479 227257596 -15406757 + FLAM_C SINE Alu 2 118 -25 793 315 53 30 chr1 227257653 227258126 -15406227 - L2 LINE L2 -271 3042 2553 512 223 16 95 chr1 227258126 227258361 -15405992 - L1MCa LINE L1 -5005 1602 1270 1757 186 6 28 chr1 227258361 227258679 -15405674 - AluJo SINE Alu -1 311 1 512 223 16 95 chr1 227258679 227258781 -15405572 - L1MCa LINE L1 -5337 1270 1161 2021 187 71 20 chr1 227259569 227260007 -15404346 - LTR40b LTR ERVL -2 460 1 278 350 50 8 chr1 227261993 227262113 -15402240 + L2 LINE L2 3148 3272 0 189 306 32 0 chr1 227262973 227263035 -15401318 + MIR SINE MIR 79 142 -120 1889 181 78 34 chr1 227263254 227263701 -15400652 - MLT1C LTR MaLR 0 467 1 985 39 78 0 chr1 227263745 227263874 -15400479 + MER85 DNA T2_type 1 139 0 387 267 58 29 chr1 227264343 227264583 -15399770 - L1ME4a LINE L1 -239 5882 5636 875 284 34 45 chr1 227265062 227265166 -15399187 + MLT1I LTR MaLR 59 163 -246 273 29 0 0 chr1 227265166 227265200 -15399153 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 2182 112 0 0 chr1 227265200 227265477 -15398876 - AluSc SINE Alu -32 277 1 875 284 34 45 chr1 227265477 227265726 -15398627 + MLT1I LTR MaLR 161 409 0 537 171 9 27 chr1 227266521 227266632 -15397721 + FLAM_A SINE Alu 28 136 -6 190 247 78 72 chr1 227266686 227266852 -15397501 - L2 LINE L2 -182 3090 2924 1539 192 0 52 chr1 227267530 227267821 -15396532 + AluJo SINE Alu 1 276 -36 714 242 111 0 chr1 227267937 227268127 -15396226 - MIR SINE MIR -21 241 31 938 262 44 63 chr1 227268286 227268759 -15395594 - MER101 LTR ERV1 0 474 11 285 320 166 11 chr1 227268984 227269165 -15395188 - MIR SINE MIR -33 229 21 1668 170 161 17 chr1 227270573 227270978 -15393375 - MLT1C LTR MaLR 0 467 5 681 251 138 9 chr1 227272786 227273017 -15391336 + MIR SINE MIR 2 262 0 199 336 70 16 chr1 227273287 227273415 -15390938 - L2 LINE L2 -6 3307 3173 2229 173 37 53 chr1 227273473 227273729 -15390624 + MLT1D LTR MaLR 3 249 -256 1655 166 89 6 chr1 227273729 227274066 -15390287 - MLT1A1 LTR MaLR 0 365 1 2229 173 37 53 chr1 227274066 227274317 -15390036 + MLT1D LTR MaLR 249 502 -3 2045 147 0 3 chr1 227275286 227275578 -15388775 - AluJo SINE Alu -21 291 1 228 246 0 18 chr1 227276069 227276126 -15388227 - L2 LINE L2 0 3313 3258 854 165 0 0 chr1 227276240 227276373 -15387980 + FRAM SINE Alu 1 132 -44 270 106 0 0 chr1 227276392 227276439 -15387914 + (TC)n Simple_repeat Simple_repeat 2 48 0 1255 125 0 116 chr1 227276456 227276688 -15387665 - AluJo SINE Alu -102 210 6 199 294 153 0 chr1 227277421 227277506 -15386847 - L2 LINE L2 -1 3312 3215 788 183 46 0 chr1 227277535 227277688 -15386665 + MLT1A2 LTR MaLR 1 160 -214 432 51 0 0 chr1 227277705 227277764 -15386589 + (TC)n Simple_repeat Simple_repeat 1 59 0 2203 149 43 24 chr1 227277797 227278219 -15386134 - MSTB1 LTR MaLR -2 430 1 397 294 21 0 chr1 227278233 227278376 -15385977 + MLT1A2 LTR MaLR 241 386 -4 1702 160 17 0 chr1 227278605 227278898 -15385455 - LTR44 LTR ERV1 -7 512 215 1205 165 0 11 chr1 227278904 227279092 -15385261 - AluJo SINE Alu -20 292 107 607 184 9 0 chr1 227279132 227279241 -15385112 - FLAM_A SINE Alu -32 110 1 1104 148 5 21 chr1 227279242 227279431 -15384922 - LTR44 LTR ERV1 -333 186 1 584 262 73 21 chr1 227279445 227279636 -15384717 - MER3 DNA MER1_type 0 209 9 687 203 68 0 chr1 227279968 227280145 -15384208 - MER5A DNA MER1_type 0 189 1 648 252 179 15 chr1 227280172 227280446 -15383907 - L2 LINE L2 0 3313 2995 1543 135 142 19 chr1 227280543 227280803 -15383550 + AluJb SINE Alu 5 296 -16 461 286 183 8 chr1 227280978 227281230 -15383123 + MER115 DNA AcHobo 89 384 -309 235 321 0 0 chr1 227281263 227281316 -15383037 + Zaphod DNA AcHobo 3979 4031 0 2389 101 3 0 chr1 227281757 227282065 -15382288 + AluSp SINE Alu 1 309 -4 270 81 0 0 chr1 227282065 227282102 -15382251 + (GGAGAA)n Simple_repeat Simple_repeat 1 37 0 191 353 24 24 chr1 227282385 227282470 -15381883 - L2 LINE L2 -2 3270 3186 2247 105 7 0 chr1 227282605 227282899 -15381454 - AluSp SINE Alu -17 296 1 186 43 0 0 chr1 227282915 227282938 -15381415 + (CA)n Simple_repeat Simple_repeat 2 24 0 419 299 49 25 chr1 227282943 227283187 -15381166 - L1ME4a LINE L1 -202 5919 5670 207 380 0 0 chr1 227283412 227283491 -15380862 + L2 LINE L2 3235 3313 0 188 280 40 0 chr1 227284602 227284652 -15379701 + MIR SINE MIR 41 92 -116 301 280 100 1 chr1 227285831 227285973 -15378380 + MIR3 SINE MIR 2 141 -67 511 299 76 0 chr1 227285989 227286173 -15378180 - L2 LINE L2 0 3313 3116 287 160 13 0 chr1 227286218 227286293 -15378060 + GA-rich Low_complexity Low_complexity 2 77 0 555 166 6 18 chr1 227286333 227286502 -15377851 + GA-rich Low_complexity Low_complexity 1 167 0 318 273 49 16 chr1 227286530 227286677 -15377676 - L2 LINE L2 -303 3010 2855 232 268 0 56 chr1 227288612 227288683 -15375670 + L2 LINE L2 3198 3264 -8 2250 144 0 0 chr1 227289656 227289968 -15374385 + AluSx SINE Alu 1 312 0 525 143 133 9 chr1 227290340 227290358 -15373995 - FLAM_A SINE Alu -171 140 126 2040 121 3 48 chr1 227290358 227290673 -15373680 + AluSx SINE Alu 1 301 -11 525 143 133 9 chr1 227290673 227290759 -15373594 - FLAM_A SINE Alu -185 126 23 251 308 0 0 chr1 227292130 227292195 -15372158 + MIR SINE MIR 79 143 -119 2061 132 3 20 chr1 227292222 227292388 -15371965 - AluSx SINE Alu -12 300 140 2438 81 0 3 chr1 227292388 227292686 -15371667 - AluY SINE Alu -14 297 1 2061 132 3 20 chr1 227292686 227292822 -15371531 - AluSx SINE Alu -172 140 3 207 186 0 0 chr1 227292976 227293019 -15371334 + (TG)n Simple_repeat Simple_repeat 1 43 0 441 276 112 0 chr1 227294838 227294972 -15369381 - MIR SINE MIR -1 261 113 1467 152 117 30 chr1 227294980 227295244 -15369109 + AluJo SINE Alu 11 297 -15 180 0 0 0 chr1 227295244 227295264 -15369089 + (TA)n Simple_repeat Simple_repeat 2 21 0 183 379 21 32 chr1 227295283 227295378 -15368975 - MIR SINE MIR -70 138 45 999 142 19 12 chr1 227296007 227296169 -15368184 + AluJo SINE Alu 4 166 -146 1864 213 36 86 chr1 227296169 227296812 -15367541 - LTR6A LTR ERV1 0 564 4 586 176 64 0 chr1 227296814 227296939 -15367414 + AluJo SINE Alu 162 294 -18 1853 166 0 13 chr1 227297657 227297958 -15366395 + AluJb SINE Alu 1 297 -15 2616 58 0 10 chr1 227298707 227299015 -15365338 + AluY SINE Alu 1 305 -6 699 171 8 0 chr1 227299030 227299147 -15365206 + FLAM_C SINE Alu 1 118 -15 411 252 19 0 chr1 227300349 227300508 -15363845 + CT-rich Low_complexity Low_complexity 1 162 0 668 198 192 0 chr1 227303389 227303571 -15360782 - MER20 DNA MER1_type 0 219 3 394 299 51 13 chr1 227304165 227304322 -15360031 + MIR SINE MIR 60 222 -40 2143 119 7 0 chr1 227305992 227306286 -15358067 + AluJb SINE Alu 1 296 -16 2297 85 3 7 chr1 227306287 227306624 -15357729 + AluSq SINE Alu 1 313 0 489 225 28 21 chr1 227306980 227307122 -15357231 - LTR16A LTR ERVL -35 415 273 257 184 61 0 chr1 227307110 227307159 -15357194 - AluY SINE Alu -147 154 103 * 250 253 177 59 chr1 227307193 227307379 -15356974 - MARNA DNA Mariner -17 569 362 2103 117 0 19 chr1 227307401 227307709 -15356644 - AluSx SINE Alu -3 309 8 401 227 53 15 chr1 227307936 227308068 -15356285 - LTR16A LTR ERVL -41 409 273 351 67 0 0 chr1 227308056 227308101 -15356252 - AluY SINE Alu -147 154 110 * 259 247 177 59 chr1 227308946 227309132 -15355221 - MARNA DNA Mariner -17 569 362 2324 103 3 13 chr1 227309154 227309466 -15354887 - AluSx SINE Alu -3 309 1 1057 179 0 0 chr1 227309468 227309636 -15354717 - FRAM SINE Alu -14 162 1 777 301 93 22 chr1 227310277 227310686 -15353667 + L2 LINE L2 2858 3295 -18 788 183 0 23 chr1 227311460 227311593 -15352760 + FLAM_C SINE Alu 1 128 -5 225 0 0 0 chr1 227311752 227311777 -15352576 + (A)n Simple_repeat Simple_repeat 1 25 0 2306 170 16 49 chr1 227311826 227312273 -15352080 + MSTB1 LTR MaLR 1 432 0 1862 131 10 46 chr1 227313020 227313326 -15351027 - AluJb SINE Alu -17 295 1 2468 82 0 3 chr1 227313337 227313642 -15350711 - AluY SINE Alu -7 304 1 2050 152 0 0 chr1 227314070 227314372 -15349981 + AluSx SINE Alu 1 302 -10 2182 112 0 7 chr1 227314460 227314755 -15349598 + AluSq SINE Alu 1 293 -20 31 88 0 0 chr1 227314807 227314887 -15349466 + AT_rich Low_complexity Low_complexity 1 80 0 3869 162 44 28 chr1 227315060 227315788 -15348565 + L1MB3 LINE L1 5444 6183 0 505 63 0 0 chr1 227317257 227317320 -15347033 - AluSc SINE Alu -13 296 234 981 306 40 20 chr1 227318029 227318382 -15345971 + MLT1I LTR MaLR 47 406 -3 232 292 14 14 chr1 227319033 227319105 -15345248 + MIR SINE MIR 7 78 -184 914 255 10 10 chr1 227319106 227319314 -15345039 - MER46C DNA MER2_type 0 338 131 2352 92 0 0 chr1 227319316 227319608 -15344745 - AluSx SINE Alu -20 292 1 1729 164 47 0 chr1 227321177 227321451 -15342902 + AluJo SINE Alu 1 287 -25 454 269 147 45 chr1 227321459 227321860 -15342493 + L1ME LINE L1 5283 5724 -397 964 42 0 0 chr1 227322039 227322158 -15342195 - AluY SINE Alu -1 310 192 456 288 62 0 chr1 227322204 227322364 -15341989 + L2 LINE L2 2149 2318 -996 3232 158 87 12 chr1 227322517 227323080 -15341273 + MER6A DNA MER2_type 1 605 0 453 293 136 0 chr1 227323253 227323444 -15340909 + MIR SINE MIR 44 260 -2 797 158 0 23 chr1 227323789 227323922 -15340431 + FLAM_C SINE Alu 2 131 -2 510 270 198 20 chr1 227324799 227325044 -15339309 + L2 LINE L2 2374 2663 -651 414 332 182 0 chr1 227325044 227325258 -15339095 + MIR SINE MIR 2 254 -8 381 257 221 28 chr1 227325309 227325602 -15338751 + L2 LINE L2 2688 3030 -283 3006 166 72 2 chr1 227325748 227326259 -15338094 - MER44D DNA MER2_type 0 605 4 232 292 14 14 chr1 227326878 227326950 -15337403 + MIR SINE MIR 7 78 -184 1150 241 20 58 chr1 227326951 227327160 -15337193 - MER46C DNA MER2_type 0 338 146 2317 100 0 0 chr1 227327160 227327451 -15336902 - AluSg SINE Alu -19 291 1 1150 241 20 58 chr1 227327451 227327586 -15336767 - MER46C DNA MER2_type -192 146 7 270 213 219 71 chr1 227327593 227327748 -15336605 + MIR SINE MIR 82 259 -3 896 332 82 31 chr1 227328094 227328746 -15335607 + L2 LINE L2 2580 3271 -1 2315 86 7 0 chr1 227328819 227329109 -15335244 + AluSc SINE Alu 1 292 -17 1688 178 3 10 chr1 227329119 227329417 -15334936 + AluJo SINE Alu 1 296 -16 889 204 0 0 chr1 227330597 227330759 -15333594 - AluJb SINE Alu -14 298 137 207 306 76 62 chr1 227330795 227330939 -15333414 + L3 LINE CR1 225 370 -1207 1252 224 105 30 chr1 227330941 227331370 -15332983 + MLT1C LTR MaLR 6 466 -1 188 215 185 0 chr1 227331416 227331481 -15332872 + L3 LINE CR1 407 483 -1094 2335 96 0 7 chr1 227331501 227331803 -15332550 + AluY SINE Alu 1 300 -11 348 289 19 10 chr1 227331897 227332001 -15332352 + L2 LINE L2 3178 3282 -31 906 170 131 99 chr1 227332016 227332298 -15332055 + MER77 LTR ERV1 3 293 -312 262 238 25 88 chr1 227332302 227332382 -15331971 + MER68 LTR ERV1 488 562 0 206 368 0 0 chr1 227333547 227333615 -15330738 + L2 LINE L2 3140 3207 -65 400 307 133 31 chr1 227333631 227333856 -15330497 + MIR SINE MIR 15 262 0 207 0 0 0 chr1 227336346 227336369 -15327984 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 309 273 26 0 chr1 227336826 227336903 -15327450 - L2 LINE L2 -179 3093 3015 1949 136 30 0 chr1 227336916 227337217 -15327136 - AluSx SINE Alu -2 310 1 210 238 0 0 chr1 227337462 227337516 -15326837 + (TATATG)n Simple_repeat Simple_repeat 2 58 -6 1839 135 0 0 chr1 227337516 227337775 -15326578 - AluSx SINE Alu -20 292 34 210 238 0 0 chr1 227337775 227337783 -15326570 + (TATATG)n Simple_repeat Simple_repeat 57 64 0 217 219 61 61 chr1 227337867 227337949 -15326404 - L2 LINE L2 -639 2675 2594 310 302 41 30 chr1 227338197 227338366 -15325987 - L2 LINE L2 -816 2498 2328 228 265 152 33 chr1 227338441 227338592 -15325761 - L2 LINE L2 -1006 2308 2140 837 259 66 103 chr1 227338616 227339019 -15325334 + L2 LINE L2 2743 3160 -153 1527 180 10 28 chr1 227339019 227339308 -15325045 - AluJo SINE Alu -24 288 5 837 259 66 103 chr1 227339308 227339342 -15325011 + L2 LINE L2 3160 3194 -119 1713 190 60 62 chr1 227339342 227339450 -15324903 - MER63B DNA MER1_type -626 436 329 2425 68 3 0 chr1 227339450 227339743 -15324610 + AluSp SINE Alu 1 294 -19 1713 190 60 62 chr1 227339743 227340071 -15324282 - MER63B DNA MER1_type -733 329 1 837 259 66 103 chr1 227340071 227340241 -15324112 + L2 LINE L2 3194 3313 0 738 236 0 45 chr1 227340467 227340645 -15323708 + MER5B DNA MER1_type 9 178 0 2395 55 10 0 chr1 227340650 227340939 -15323414 + AluY SINE Alu 1 292 -19 430 180 79 0 chr1 227341413 227341502 -15322851 + L2 LINE L2 3174 3269 -3 2258 151 39 17 chr1 227341827 227342209 -15322144 - Tigger2 DNA MER2_type 0 2718 2346 923 112 8 30 chr1 227342209 227342343 -15322010 + AluJo SINE Alu 1 131 -171 2258 151 39 17 chr1 227342343 227342411 -15321942 - Tigger2 DNA MER2_type -372 2346 2 2002 153 66 27 chr1 227342447 227342781 -15321572 + MER7A DNA MER2_type 2 346 0 206 379 97 0 chr1 227343250 227343353 -15321000 - L2 LINE L2 -33 3239 3127 189 337 32 0 chr1 227343621 227343716 -15320637 - L2 LINE L2 -1396 1918 1821 803 157 9 0 chr1 227343728 227343843 -15320510 + AluJo SINE Alu 2 117 -195 266 0 29 0 chr1 227343843 227343877 -15320476 + (TTA)n Simple_repeat Simple_repeat 2 36 0 682 139 0 124 chr1 227343877 227344014 -15320339 - FLAM_C SINE Alu -22 121 2 919 193 26 36 chr1 227344019 227344211 -15320142 + AluJo SINE Alu 110 299 -13 670 201 113 6 chr1 227345320 227345479 -15318874 + MER5B DNA MER1_type 3 178 0 292 143 0 36 chr1 227345616 227345672 -15318681 + MER5B DNA MER1_type 1 54 -124 650 329 206 8 chr1 227345696 227346197 -15318156 - L2 LINE L2 -424 2890 2291 2302 74 0 3 chr1 227346722 227347031 -15317322 - AluY SINE Alu 0 308 1 577 165 149 8 chr1 227347499 227347620 -15316733 + L2 LINE L2 3176 3313 0 520 234 29 58 chr1 227347612 227347695 -15316658 - MER5B DNA MER1_type -37 141 62 * 1512 62 6 0 chr1 227347695 227347874 -15316479 - AluSq SINE Alu -133 180 1 520 234 29 58 chr1 227347874 227347927 -15316426 - MER5B DNA MER1_type -116 62 9 939 306 93 102 chr1 227347980 227348208 -15316145 + L2 LINE L2 1177 1406 -1908 2364 76 0 23 chr1 227348208 227348510 -15315843 - AluY SINE Alu -16 295 1 2083 125 3 3 chr1 227348518 227348815 -15315538 - AluSx SINE Alu -15 297 1 939 306 93 102 chr1 227348815 227349199 -15315154 + L2 LINE L2 1413 1799 -1515 1786 141 13 44 chr1 227349199 227349497 -15314856 - AluJo SINE Alu -23 289 1 939 306 93 102 chr1 227349497 227350235 -15314118 + L2 LINE L2 1799 2524 -790 2569 65 0 0 chr1 227350235 227350543 -15313810 - AluY SINE Alu -3 308 1 939 306 93 102 chr1 227350543 227350657 -15313696 + L2 LINE L2 2524 2638 -676 303 331 30 8 chr1 227350640 227350773 -15313580 - L2 LINE L2 -562 2752 2617 * 468 106 0 0 chr1 227352308 227352374 -15311979 + L1MB2 LINE L1 6091 6156 -15 2385 73 3 22 chr1 227352380 227352694 -15311659 - AluY SINE Alu -3 308 1 678 92 0 92 chr1 227353047 227353124 -15311229 + L1MB5 LINE L1 6066 6130 -44 2530 60 3 0 chr1 227353124 227353422 -15310931 + AluSp SINE Alu 1 299 -14 678 92 0 92 chr1 227353422 227353464 -15310889 + L1MB5 LINE L1 6130 6174 0 786 225 48 59 chr1 227354715 227355506 -15308847 - L1MD3 LINE L1 -27 7968 7151 336 292 11 11 chr1 227356021 227356110 -15308243 + MIR SINE MIR 2 90 -172 2354 143 27 0 chr1 227356946 227357311 -15307042 - L1MB3 LINE L1 -2 6181 5807 2285 154 30 27 chr1 227357318 227358056 -15306297 - L1MB3 LINE L1 -501 5682 4948 235 227 0 0 chr1 227358166 227358210 -15306143 - L1ME LINE L1 -459 5662 5619 893 141 0 15 chr1 227358827 227358962 -15305391 + FLAM_C SINE Alu 1 133 0 2462 76 3 3 chr1 227361777 227362080 -15302273 + AluY SINE Alu 1 303 -8 968 136 0 0 chr1 227362250 227362382 -15301971 + FLAM_A SINE Alu 1 132 -1 2528 71 0 0 chr1 227362382 227362677 -15301676 + AluSg SINE Alu 1 295 -15 197 304 188 0 chr1 227362766 227362835 -15301518 - L2 LINE L2 -22 3250 3169 206 297 44 33 chr1 227363180 227363271 -15301082 - L2 LINE L2 -660 2654 2563 200 97 32 0 chr1 227364062 227364093 -15300260 + (TG)n Simple_repeat Simple_repeat 2 33 0 184 200 32 160 chr1 227364788 227364913 -15299440 + L3 LINE CR1 1154 1262 -315 246 291 89 0 chr1 227364925 227365004 -15299349 - MIR3 SINE MIR -16 192 107 211 170 84 17 chr1 227365273 227365332 -15299021 - MER5A DNA MER1_type -64 125 52 2292 98 3 0 chr1 227365577 227365873 -15298480 + AluSg SINE Alu 1 297 -13 2411 76 0 22 chr1 227366445 227366759 -15297594 + AluSc SINE Alu 1 307 -2 2586 66 0 0 chr1 227367005 227367307 -15297046 - AluY SINE Alu -9 302 1 215 203 16 0 chr1 227369562 227369626 -15294727 + (CATA)n Simple_repeat Simple_repeat 4 68 0 181 286 129 57 chr1 227370974 227371114 -15293239 + MIR3 SINE MIR 4 153 -55 972 208 40 71 chr1 227372146 227372497 -15291856 - MLT1A2 LTR MaLR -4 370 31 261 111 0 0 chr1 227372503 227372539 -15291814 - Alu SINE Alu -265 36 1 2223 101 27 3 chr1 227373213 227373511 -15290842 + AluSc SINE Alu 1 305 -4 2007 154 7 0 chr1 227373704 227373996 -15290357 + AluJb SINE Alu 1 294 -18 1739 131 0 4 chr1 227374079 227374316 -15290037 + AluSq SINE Alu 1 236 -77 1460 81 0 5 chr1 227374316 227374501 -15289852 + AluSg/x SINE Alu 120 303 -7 759 216 36 80 chr1 227374543 227374752 -15289601 + MIR SINE MIR 1 199 -63 1411 171 41 120 chr1 227374752 227375144 -15289209 - MLT1A1 LTR MaLR -3 362 2 759 216 36 80 chr1 227375144 227375184 -15289169 + MIR SINE MIR 199 239 -23 340 222 0 49 chr1 227375204 227375285 -15289068 - 5S rRNA rRNA -44 77 1 2001 48 0 0 chr1 227375479 227375707 -15288646 - AluY SINE Alu -15 296 69 402 279 83 54 chr1 227375750 227376026 -15288327 - HAL1 LINE L1 -1615 892 609 387 294 192 35 chr1 227376070 227376325 -15288028 - HAL1 LINE L1 -2051 456 162 1704 181 10 10 chr1 227376423 227376722 -15287631 + AluJo SINE Alu 9 307 -5 1814 149 12 53 chr1 227376959 227377282 -15287071 - AluSg SINE Alu 0 310 1 1813 160 0 10 chr1 227377736 227378064 -15286289 - AluJb SINE Alu 0 325 1 558 107 0 0 chr1 227378118 227378193 -15286160 - AluSp/q SINE Alu -11 302 228 1357 204 8 54 chr1 227378194 227378512 -15285841 - MER41B LTR ERV1 -143 492 190 2393 56 31 0 chr1 227378512 227378800 -15285553 - AluY SINE Alu -14 297 1 1357 204 8 54 chr1 227378800 227378833 -15285520 - MER41B LTR ERV1 -445 190 157 1024 250 32 80 chr1 227378901 227379128 -15285225 + MER21-int LTR ERV1 1219 1455 -5303 1979 142 7 10 chr1 227379128 227379430 -15284923 + AluSx SINE Alu 1 301 -11 2620 74 0 0 chr1 227379438 227379750 -15284603 + AluSx SINE Alu 1 312 0 1024 250 32 80 chr1 227379750 227380096 -15284257 + MER21-int LTR ERV1 1462 4450 -2308 833 245 20 5 chr1 227380225 227380425 -15283928 + MER21-int LTR ERV1 1673 1875 -2316 1923 125 29 0 chr1 227380620 227380938 -15283415 + AluSx SINE Alu 1 312 0 24 32 0 0 chr1 227381215 227381246 -15283107 + AT_rich Low_complexity Low_complexity 1 31 0 1512 139 4 13 chr1 227381251 227381481 -15282872 + AluSq SINE Alu 1 228 -85 1024 177 5 33 chr1 227381507 227381722 -15282631 - MER2 DNA MER2_type -136 209 1 1314 255 25 48 chr1 227381841 227382280 -15282073 + MER21-int LTR ERV1 2015 2443 -1748 2235 112 0 0 chr1 227382380 227382710 -15281643 - pTR5 LTR ERV1 -2043 395 66 330 290 16 0 chr1 227382710 227382834 -15281519 - LTR30 LTR ERV1 -80 642 517 4233 159 104 30 chr1 227382834 227383797 -15280556 - pTR5 LTR ERV1 -439 1999 743 2252 106 7 10 chr1 227383859 227384162 -15280191 + AluSc SINE Alu 1 302 -7 23 0 0 0 chr1 227384187 227384210 -15280143 + AT_rich Low_complexity Low_complexity 1 23 0 1690 73 0 0 chr1 227384567 227384771 -15279582 - AluY SINE Alu -105 206 3 396 143 0 26 chr1 227384781 227384858 -15279495 - MLT1A1 LTR MaLR -290 75 1 637 233 63 0 chr1 227385425 227385584 -15278769 + MER20 DNA MER1_type 35 203 -16 650 214 154 0 chr1 227386604 227386786 -15277567 + MER2 DNA MER2_type 1 210 -135 1815 81 5 0 chr1 227387525 227387746 -15276607 + AluSc SINE Alu 57 278 -31 2057 110 4 4 chr1 227387935 227388208 -15276145 - AluSx SINE Alu -8 304 32 1008 212 34 42 chr1 227388358 227388571 -15275782 - MER44D DNA MER2_type -1884 603 390 1279 211 3 57 chr1 227388571 227388739 -15275614 - AluJb SINE Alu 0 302 156 2222 113 0 3 chr1 227388739 227389031 -15275322 - AluSg SINE Alu -19 291 1 1279 211 3 57 chr1 227389031 227389180 -15275173 - AluJb SINE Alu -146 156 1 1008 212 34 42 chr1 227389180 227389449 -15274904 - MER44D DNA MER2_type -2097 390 2 2220 95 6 52 chr1 227397782 227398109 -15266244 - AluSp SINE Alu -1 312 1 306 0 0 0 chr1 227400143 227400177 -15264176 + (TG)n Simple_repeat Simple_repeat 1 34 0 2254 79 7 0 chr1 227400177 227400457 -15263896 - AluSp SINE Alu -31 282 1 1423 186 6 69 chr1 227402552 227402726 -15261627 + AluJo SINE Alu 1 148 -164 1896 110 0 0 chr1 227402726 227402962 -15261391 - AluSx SINE Alu -76 236 1 1423 186 6 69 chr1 227402962 227403104 -15261249 + AluJo SINE Alu 148 297 -15 500 230 17 32 chr1 227403172 227403395 -15260958 - MLT2C1 LTR ERVL 0 397 140 204 200 0 86 chr1 227403455 227403525 -15260828 + MIR SINE MIR 185 248 -14 * 208 179 26 0 chr1 227403493 227403532 -15260821 + L2 LINE L2 3262 3301 -12 660 144 0 0 chr1 227403554 227403651 -15260702 + FLAM_A SINE Alu 20 116 -26 2152 112 27 0 chr1 227403652 227403946 -15260407 - AluSx SINE Alu -10 302 1 2198 77 0 14 chr1 227404573 227404858 -15259495 + AluSx SINE Alu 1 281 -31 198 71 0 0 chr1 227404858 227404886 -15259467 + (CATA)n Simple_repeat Simple_repeat 1 28 0 473 319 115 0 chr1 227405805 227405962 -15258391 - MIR SINE MIR -4 258 84 518 235 254 9 chr1 227406072 227406444 -15257909 - L2 LINE L2 -46 3267 2782 937 183 30 6 chr1 227406568 227406737 -15257616 - AluJb SINE Alu -139 173 1 2024 141 0 3 chr1 227406822 227407121 -15257232 - AluSx SINE Alu -14 298 1 311 220 18 92 chr1 227407727 227407836 -15256517 + MER5A DNA MER1_type 9 109 -80 186 250 0 0 chr1 227408074 227408114 -15256239 - L2 LINE L2 -13 3300 3261 21 36 0 0 chr1 227408700 227408728 -15255625 + AT_rich Low_complexity Low_complexity 1 28 0 740 162 0 0 chr1 227409023 227409128 -15255225 - FRAM SINE Alu -30 146 42 470 238 61 12 chr1 227409128 227409292 -15255061 - L1 LINE L1 -985 5161 4990 217 370 51 14 chr1 227409476 227409614 -15254739 + MIR SINE MIR 50 192 -70 832 123 15 15 chr1 227409904 227410034 -15254319 + FLAM_C SINE Alu 4 133 0 2486 77 0 0 chr1 227410167 227410467 -15253886 - AluSc SINE Alu -9 300 1 1597 75 5 201 chr1 227410582 227411043 -15253310 + Tigger2 DNA MER2_type 1 2621 -97 836 190 31 45 chr1 227411043 227411332 -15253021 + pTR5 LTR ERV1 744 1028 -1410 3097 141 51 18 chr1 227411411 227411963 -15252390 + LTR12 LTR ERV1 1 558 -156 448 265 0 0 chr1 227411963 227412065 -15252288 + Tigger2 DNA MER2_type 2607 2708 -10 2954 162 26 24 chr1 227412879 227413423 -15250930 - Tigger3(Golem) DNA MER2_type 0 3029 2485 1018 134 0 13 chr1 227413428 227413577 -15250776 + AluJo SINE Alu 5 151 -161 324 263 11 0 chr1 227413590 227413685 -15250668 - L1ME LINE L1 -3539 3001 2906 771 182 0 23 chr1 227413720 227413852 -15250501 - FLAM_A SINE Alu -4 129 1 657 320 2 17 chr1 227413877 227414192 -15250161 - L1ME LINE L1 -3775 2765 2505 2248 93 10 3 chr1 227414192 227414493 -15249860 - AluSq SINE Alu -10 303 1 657 320 2 17 chr1 227414493 227414596 -15249757 - L1ME LINE L1 -4035 2505 2402 226 116 23 0 chr1 227414578 227414621 -15249732 - L1MB8 LINE L1 -1 6177 6134 * 2541 111 3 3 chr1 227414659 227415011 -15249342 - L1PA16 LINE L1 -9 6157 5806 856 146 0 8 chr1 227415067 227415197 -15249156 - AluJb SINE Alu -183 129 1 1906 150 89 64 chr1 227415201 227415398 -15248955 - L1MB4 LINE L1 0 6180 5989 2505 53 0 7 chr1 227415398 227415698 -15248655 - AluY SINE Alu -13 298 1 1906 150 89 64 chr1 227415698 227415807 -15248546 - L1MB4 LINE L1 -191 5989 5884 2034 128 30 7 chr1 227415807 227416112 -15248241 - AluSx SINE Alu 0 312 1 1906 150 89 64 chr1 227416112 227416285 -15248068 - L1MB4 LINE L1 -296 5884 5688 2035 132 0 0 chr1 227416321 227416602 -15247751 + AluSx SINE Alu 9 289 -23 231 313 60 13 chr1 227416609 227416759 -15247594 - L1ME LINE L1 -4322 2399 2243 289 174 0 72 chr1 227416760 227416829 -15247524 - Alu SINE Alu 0 302 239 3378 157 25 7 chr1 227416871 227417463 -15246890 + MER50 LTR ERV1 109 711 -23 1912 241 45 69 chr1 227417464 227418146 -15246207 - MER21B LTR ERV1 -187 676 11 269 254 51 53 chr1 227418146 227418270 -15246083 - L1ME LINE L1 -5962 568 11 847 201 55 30 chr1 227418554 227418753 -15245600 + MER3 DNA MER1_type 5 208 -1 323 242 89 24 chr1 227419051 227419175 -15245178 + L1ME2 LINE L1 6023 6154 -10 401 226 19 44 chr1 227419186 227419345 -15245008 + L1MC5 LINE L1 7772 7926 -35 1031 209 43 0 chr1 227419605 227419840 -15244513 - L1MC4a LINE L1 -1863 5945 5701 477 219 16 65 chr1 227419978 227420101 -15244252 - L1MC4a LINE L1 -2147 5661 5545 214 385 42 0 chr1 227420678 227420774 -15243579 + MIR SINE MIR 1 100 -162 575 264 91 41 chr1 227421062 227421169 -15243184 + MIR SINE MIR 20 120 -142 1946 148 3 0 chr1 227421169 227421472 -15242881 - AluSx SINE Alu -8 304 1 575 264 91 41 chr1 227421472 227421584 -15242769 + MIR SINE MIR 120 250 -12 193 246 58 72 chr1 227421623 227421692 -15242661 - L2 LINE L2 -4 3268 3201 471 293 137 49 chr1 227422061 227422777 -15241576 + L1ME4a LINE L1 3694 4472 -1674 442 226 0 0 chr1 227422779 227422872 -15241481 + L1ME4a LINE L1 4517 4609 -1537 1819 169 66 3 chr1 227423000 227423320 -15241033 - MER2 DNA MER2_type -1 343 4 405 295 131 48 chr1 227423453 227423533 -15240820 + L1ME4a LINE L1 4886 4958 -1236 1644 92 163 0 chr1 227423533 227423784 -15240569 - AluSx SINE Alu -20 292 1 405 295 131 48 chr1 227423784 227424176 -15240177 + L1ME4a LINE L1 4958 5408 -786 1142 143 165 96 chr1 227424193 227424465 -15239888 + AluJb SINE Alu 2 292 -10 2041 120 0 7 chr1 227424555 227424846 -15239507 - AluJo SINE Alu -22 290 2 374 308 113 51 chr1 227424899 227425359 -15238994 + L1ME4a LINE L1 5513 6020 -144 2326 94 0 0 chr1 227425864 227426161 -15238192 + AluSx SINE Alu 1 297 -15 1497 151 0 0 chr1 227428795 227429020 -15235333 + AluJb SINE Alu 82 306 -6 26 0 0 0 chr1 227429256 227429282 -15235071 + AT_rich Low_complexity Low_complexity 1 26 0 205 171 0 24 chr1 227431151 227431192 -15233161 + (CGG)n Simple_repeat Simple_repeat 2 41 0 2297 74 0 17 chr1 227433837 227434135 -15230218 + AluY SINE Alu 1 293 -18 303 321 64 23 chr1 227434135 227434299 -15230054 - MIR SINE MIR -51 211 41 954 80 8 0 chr1 227434448 227434573 -15229780 + AluSp/q SINE Alu 176 301 -12 475 205 79 0 chr1 227434647 227434774 -15229579 + L1MB2 LINE L1 6028 6164 -7 536 224 145 31 chr1 227434877 227435043 -15229310 + L1M1 LINE L1 3558 3704 -3861 1304 145 25 58 chr1 227435043 227435284 -15229069 - MER46A DNA MER2_type -1 235 3 536 224 145 31 chr1 227435284 227435458 -15228895 + L1M1 LINE L1 3704 3941 -3624 1981 127 3 3 chr1 227435461 227435744 -15228609 + AluSx SINE Alu 1 283 -29 483 181 0 0 chr1 227435749 227435832 -15228521 - AluJ/FLAM SINE Alu -227 85 3 1157 154 43 107 chr1 227436095 227436177 -15228176 + MER7A DNA MER2_type 10 96 -2942 2127 118 16 3 chr1 227436177 227436483 -15227870 - AluSq SINE Alu -3 310 1 2287 83 3 10 chr1 227436492 227436793 -15227560 - AluY SINE Alu -12 299 1 1157 154 43 107 chr1 227436793 227436980 -15227373 + MER7A DNA MER2_type 104 269 -77 757 137 51 120 chr1 227437041 227437216 -15227137 + Tigger3(Golem) DNA MER2_type 2866 3028 -1 194 309 0 0 chr1 227437338 227437380 -15226973 - L2 LINE L2 -22 3291 3250 1348 210 76 10 chr1 227438000 227438290 -15226063 + AluJo SINE Alu 1 309 -3 25 0 0 0 chr1 227438502 227438527 -15225826 + AT_rich Low_complexity Low_complexity 1 25 0 1345 216 149 104 chr1 227438809 227438865 -15225488 - L1MC4a LINE L1 -744 5402 5350 2139 91 25 44 chr1 227438865 227439184 -15225169 - AluSq SINE Alu 0 313 1 1345 216 149 104 chr1 227439184 227439583 -15224770 - L1MC4a LINE L1 -796 5350 4970 1612 149 69 45 chr1 227439583 227439871 -15224482 - AluJo SINE Alu -17 295 1 1345 216 149 104 chr1 227439871 227439935 -15224418 - L1MC4a LINE L1 -1176 4970 4910 1671 100 4 70 chr1 227439935 227440205 -15224148 - AluSc SINE Alu -1 308 57 1345 216 149 104 chr1 227440205 227440419 -15223934 - L1MC4a LINE L1 -1236 4910 5160 1958 147 3 0 chr1 227440419 227440711 -15223642 + AluSx SINE Alu 3 295 -17 1345 216 149 104 chr1 227440711 227440749 -15223604 - L1MC4a LINE L1 -985 5161 5126 1328 126 70 5 chr1 227440835 227441050 -15223303 - MER46A DNA MER2_type -4 232 4 2063 131 0 13 chr1 227441106 227441420 -15222933 - AluJb SINE Alu -2 310 1 188 349 47 35 chr1 227441805 227441891 -15222462 - MIR SINE MIR -86 122 36 378 247 215 63 chr1 227442082 227442305 -15222048 + MIR SINE MIR 6 262 0 1811 159 13 32 chr1 227442726 227443034 -15221319 - AluJb SINE Alu -10 302 1 1677 182 0 10 chr1 227443484 227443786 -15220567 + AluJb SINE Alu 1 299 -13 227 378 92 17 chr1 227444356 227444475 -15219878 - L2 LINE L2 -23 3249 3122 216 0 0 0 chr1 227444962 227444986 -15219367 + (A)n Simple_repeat Simple_repeat 1 24 0 1260 217 286 30 chr1 227448172 227448706 -15215647 - L1ME2 LINE L1 -26 6138 5468 336 294 96 96 chr1 227448862 227449281 -15215072 - L2 LINE L2 -23 3249 2831 2290 93 0 7 chr1 227449834 227450134 -15214219 - AluSx SINE Alu -13 299 2 2267 78 14 3 chr1 227450210 227450505 -15213848 + AluSq SINE Alu 1 298 -15 2198 117 0 0 chr1 227450510 227450814 -15213539 + AluSx SINE Alu 3 306 0 2074 64 121 0 chr1 227450817 227451081 -15213272 + AluSc SINE Alu 2 297 -2 2196 113 0 0 chr1 227452509 227452810 -15211543 + AluSx SINE Alu 1 301 -11 504 0 0 0 chr1 227452811 227452867 -15211486 + (TA)n Simple_repeat Simple_repeat 1 56 0 2007 144 0 10 chr1 227453792 227454105 -15210248 + AluJb SINE Alu 1 310 -2 380 219 52 21 chr1 227454249 227454345 -15210008 + HAL1 LINE L1 812 910 -1597 1873 233 196 6 chr1 227454391 227455096 -15209257 + HAL1 LINE L1 1042 1880 -627 390 278 97 54 chr1 227455111 227455482 -15208871 + HAL1 LINE L1 2021 2407 -100 22 35 0 0 chr1 227455488 227455517 -15208836 + AT_rich Low_complexity Low_complexity 1 29 0 2159 102 27 0 chr1 227455525 227455820 -15208533 - AluSx SINE Alu -9 303 1 278 172 138 35 chr1 227455898 227455985 -15208368 + MIR SINE MIR 54 149 -113 206 253 72 36 chr1 227456795 227456878 -15207475 - MIR SINE MIR -18 244 159 1440 145 9 0 chr1 227459196 227459417 -15204936 + AluSg/x SINE Alu 85 307 -5 2023 119 0 29 chr1 227461658 227461969 -15202384 + AluSg SINE Alu 1 302 -8 211 261 34 68 chr1 227462563 227462651 -15201702 - MIR3 SINE MIR -116 92 8 22 35 0 0 chr1 227463572 227463601 -15200752 + AT_rich Low_complexity Low_complexity 1 29 0 214 245 0 0 chr1 227463835 227463884 -15200469 + CT-rich Low_complexity Low_complexity 5 53 0 2218 105 7 0 chr1 227464652 227464946 -15199407 - AluSx SINE Alu -16 296 1 231 226 0 19 chr1 227465231 227465284 -15199069 + (CAT)n Simple_repeat Simple_repeat 3 54 0 274 349 48 16 chr1 227465381 227465507 -15198846 - L2 LINE L2 -6 3266 3137 266 320 102 61 chr1 227465891 227466088 -15198265 + L2 LINE L2 3045 3249 -23 339 195 130 0 chr1 227466687 227466764 -15197589 + L1ME3A LINE L1 6067 6153 -17 22 35 0 0 chr1 227466826 227466855 -15197498 + AT_rich Low_complexity Low_complexity 1 29 0 983 178 79 24 chr1 227467261 227467426 -15196927 - L1MA10 LINE L1 -1 6333 6148 372 43 0 0 chr1 227467426 227467472 -15196881 + (TG)n Simple_repeat Simple_repeat 2 47 0 983 178 79 24 chr1 227467472 227467559 -15196794 - L1MA10 LINE L1 -186 6148 6067 1296 164 5 0 chr1 227468278 227468479 -15195874 - AluJo SINE Alu -16 296 95 2130 112 20 0 chr1 227468813 227469107 -15195246 - AluSx SINE Alu -7 305 6 631 280 198 33 chr1 227469782 227469883 -15194470 - L2 LINE L2 -4 3309 3226 2790 167 72 0 chr1 227469883 227470393 -15193960 + MER44D DNA MER2_type 4 605 0 631 280 198 33 chr1 227470393 227470848 -15193505 - L2 LINE L2 -87 3226 2667 431 332 182 0 chr1 227470881 227471095 -15193258 - MIR SINE MIR -8 254 2 * 516 270 198 20 chr1 227471095 227471340 -15193013 - L2 LINE L2 -651 2663 2374 744 158 0 23 chr1 227472218 227472351 -15192002 - FLAM_C SINE Alu -2 131 2 464 293 136 0 chr1 227472696 227472887 -15191466 - MIR SINE MIR -2 260 44 2962 158 87 12 chr1 227473060 227473623 -15190730 - MER6A DNA MER2_type 0 605 1 440 294 62 0 chr1 227473776 227473936 -15190417 - L2 LINE L2 -996 2318 2149 956 42 0 0 chr1 227473982 227474101 -15190252 + AluY SINE Alu 192 310 -1 311 269 150 47 chr1 227474280 227474681 -15189672 - L1ME LINE L1 -397 5724 5283 1747 164 47 0 chr1 227474689 227474963 -15189390 - AluJo SINE Alu -25 287 1 2448 90 0 0 chr1 227476532 227476843 -15187510 + AluSx SINE Alu 1 311 -1 197 346 121 30 chr1 227477225 227477456 -15186897 - L2 LINE L2 -212 3060 2809 207 354 39 24 chr1 227477499 227477626 -15186727 - MER5A DNA MER1_type 0 189 61 1114 271 126 42 chr1 227477967 227478456 -15185897 - L2 LINE L2 -5 3308 2780 849 245 30 0 chr1 227478502 227478702 -15185651 + MER58A DNA MER1_type 19 224 0 1033 245 73 38 chr1 227478703 227479075 -15185278 - L2 LINE L2 -635 2679 2295 203 276 95 89 chr1 227479160 227479460 -15184893 - L2 LINE L2 -212 3060 2710 1431 137 167 15 chr1 227479602 227479872 -15184481 - AluJb SINE Alu -1 311 1 252 217 22 54 chr1 227480013 227480105 -15184248 - MIR SINE MIR -45 217 129 236 330 220 0 chr1 227480360 227480469 -15183884 + L2 LINE L2 3140 3272 0 1559 190 14 11 chr1 227480629 227480908 -15183445 - AluJo SINE Alu -25 287 8 180 0 0 0 chr1 227480993 227481013 -15183340 + (CA)n Simple_repeat Simple_repeat 2 21 0 2554 49 0 7 chr1 227481108 227481415 -15182938 - AluY SINE Alu -6 305 1 959 135 7 0 chr1 227482254 227482395 -15181958 - AluSg/x SINE Alu -37 275 134 2222 111 0 0 chr1 227482395 227482711 -15181642 - AluSx SINE Alu 0 312 1 348 312 161 32 chr1 227482790 227483261 -15181092 + L3 LINE CR1 690 1221 -356 2042 117 0 13 chr1 227483423 227483743 -15180610 + AluSc SINE Alu 1 309 0 771 246 73 11 chr1 227483748 227483939 -15180414 + MIR SINE MIR 28 230 -32 336 254 119 0 chr1 227483972 227484090 -15180263 + MIR SINE MIR 75 206 -56 211 218 55 0 chr1 227484111 227484166 -15180187 - L2 LINE L2 -1 3271 3214 * 515 270 90 15 chr1 227484133 227484333 -15180020 - MIR SINE MIR -20 242 28 200 246 16 33 chr1 227484393 227484454 -15179899 + L2 LINE L2 3213 3272 0 1069 119 25 12 chr1 227484610 227484770 -15179583 - AluJo SINE Alu -16 296 135 378 0 0 0 chr1 227484849 227484891 -15179462 + (TG)n Simple_repeat Simple_repeat 1 42 0 768 144 8 8 chr1 227484891 227485006 -15179347 - AluJo SINE Alu -183 119 2 190 311 68 14 chr1 227485109 227485183 -15179170 - L3 LINE CR1 -1 1576 1499 2443 50 0 0 chr1 227485762 227486078 -15178275 + AluY SINE Alu 1 316 0 398 299 279 15 chr1 227486298 227486495 -15177858 + MIR SINE MIR 11 259 -3 697 298 166 38 chr1 227486574 227487074 -15177279 + MLT1K LTR MaLR 1 564 -24 527 265 184 9 chr1 227487135 227487358 -15176995 + MIR SINE MIR 1 262 0 227 360 170 39 chr1 227487781 227488133 -15176220 + L2 LINE L2 940 1367 -1947 2434 64 0 35 chr1 227488133 227488445 -15175908 - AluY SINE Alu -10 301 1 227 360 170 39 chr1 227488445 227488550 -15175803 + L2 LINE L2 1367 1457 -1857 315 281 267 20 chr1 227488696 227488842 -15175511 - MER5A DNA MER1_type -1 188 7 217 264 249 31 chr1 227488845 227489038 -15175315 + L2 LINE L2 1562 1796 -1518 501 219 13 46 chr1 227489057 227489208 -15175145 - MER119 DNA MER1_type -4 579 434 1040 140 18 0 chr1 227489212 227489383 -15174970 - MER119 DNA MER1_type -250 333 160 413 210 202 8 chr1 227489504 227489623 -15174730 + MER5A DNA MER1_type 17 158 -31 454 330 113 58 chr1 227489656 227490003 -15174350 + L2 LINE L2 1781 2107 -1207 2343 88 0 10 chr1 227490003 227490308 -15174045 - AluSc SINE Alu -7 302 1 454 330 113 58 chr1 227490308 227490887 -15173466 + L2 LINE L2 2107 2758 -556 1060 189 47 0 chr1 227491182 227491373 -15172980 + MER58A DNA MER1_type 1 200 -24 254 195 0 0 chr1 227492040 227492081 -15172272 + MER58A DNA MER1_type 2 42 -182 763 182 0 23 chr1 227492086 227492218 -15172135 - FLAM_A SINE Alu -12 130 2 838 213 6 0 chr1 227492219 227492379 -15171974 + MER58A DNA MER1_type 40 200 -24 342 329 44 47 chr1 227492691 227492965 -15171388 - L2 LINE L2 -908 2406 2134 * 583 245 100 45 chr1 227492956 227493156 -15171197 - MIR SINE MIR -15 247 37 635 294 132 0 chr1 227493373 227493570 -15170783 - MIR SINE MIR -29 233 11 236 244 0 0 chr1 227494107 227494152 -15170201 - MER5A DNA MER1_type -68 121 77 1862 168 3 7 chr1 227494524 227494834 -15169519 + AluJb SINE Alu 1 309 -3 884 211 69 41 chr1 227494943 227495161 -15169192 + MIR SINE MIR 31 254 -8 324 274 107 66 chr1 227495161 227495358 -15168995 + L1ME LINE L1 5581 5785 -336 2414 212 45 29 chr1 227495359 227496194 -15168159 - L1ME2 LINE L1 -281 5883 5037 2277 114 0 0 chr1 227496194 227496491 -15167862 - AluSx SINE Alu -15 297 1 2414 212 45 29 chr1 227496491 227496741 -15167612 - L1ME2 LINE L1 -1127 5037 4793 1618 227 47 0 chr1 227496743 227497170 -15167183 - L1ME2 LINE L1 -3240 2906 2460 1991 118 36 26 chr1 227497245 227497549 -15166804 + AluSx SINE Alu 1 307 -5 869 143 0 0 chr1 227498253 227498379 -15165974 + FLAM_A SINE Alu 1 126 -7 25 75 0 0 chr1 227498486 227498539 -15165814 + AT_rich Low_complexity Low_complexity 1 53 0 2323 79 6 22 chr1 227498917 227499233 -15165120 - AluY SINE Alu 0 311 1 258 254 183 37 chr1 227499253 227499435 -15164918 - MIR SINE MIR -50 212 14 23 0 0 0 chr1 227499786 227499809 -15164544 + AT_rich Low_complexity Low_complexity 1 23 0 937 56 0 32 chr1 227499811 227499936 -15164417 + AluY SINE Alu 175 295 -16 354 318 72 76 chr1 227503016 227503252 -15161101 + L2 LINE L2 3038 3272 0 184 344 0 31 chr1 227503334 227503398 -15160955 - L2 LINE L2 -952 2362 2301 445 324 107 14 chr1 227503504 227503720 -15160633 - MIR SINE MIR -4 258 23 1197 239 39 49 chr1 227503855 227504353 -15160000 + MLT1E LTR MaLR 45 593 0 1674 147 110 26 chr1 227504843 227505189 -15159164 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr1 227505354 227505376 -15158977 + AT_rich Low_complexity Low_complexity 1 22 0 2222 100 0 47 chr1 227505473 227505793 -15158560 + AluSg SINE Alu 1 305 -5 637 174 8 8 chr1 227506605 227506726 -15157627 + L2 LINE L2 2425 2545 -769 916 281 103 73 chr1 227506731 227506819 -15157534 + L2 LINE L2 2804 2888 -425 1952 130 0 0 chr1 227506819 227507088 -15157265 - AluSx SINE Alu -12 300 32 916 281 103 73 chr1 227507088 227507494 -15156859 + L2 LINE L2 2888 3313 0 230 162 0 0 chr1 227508441 227508478 -15155875 + Alu SINE Alu 1 37 -265 1215 130 16 21 chr1 227508478 227508670 -15155683 - AluJb SINE Alu -9 303 113 256 100 0 0 chr1 227508771 227508811 -15155542 - MER65A LTR ERV1 -404 41 2 270 371 40 8 chr1 227509011 227509135 -15155218 + MIR3 SINE MIR 54 181 -27 2086 121 0 13 chr1 227509135 227509269 -15155084 + AluSg SINE Alu 1 135 -175 2279 101 0 7 chr1 227509269 227509598 -15154755 + AluY SINE Alu 1 311 0 2086 121 0 13 chr1 227509598 227509761 -15154592 + AluSg SINE Alu 135 294 -16 1941 150 20 0 chr1 227509819 227510113 -15154240 + AluSx SINE Alu 1 300 -12 1775 181 0 32 chr1 227511498 227511807 -15152546 - AluJo SINE Alu -13 299 1 213 121 0 0 chr1 227512076 227512109 -15152244 + (A)n Simple_repeat Simple_repeat 1 33 0 192 77 0 0 chr1 227512258 227512284 -15152069 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 847 283 53 12 chr1 227513196 227513440 -15150913 + MIR SINE MIR 9 262 0 23 78 0 0 chr1 227513946 227513997 -15150356 + AT_rich Low_complexity Low_complexity 1 51 0 240 274 74 0 chr1 227514615 227514710 -15149643 - MIR SINE MIR -71 191 90 1145 207 111 5 chr1 227514712 227515017 -15149336 + L1ME1 LINE L1 5497 5835 -331 960 170 106 50 chr1 227515017 227515235 -15149118 + MSTB LTR MaLR 1 230 -198 255 125 0 0 chr1 227515238 227515278 -15149075 + (TC)n Simple_repeat Simple_repeat 1 40 0 1340 174 0 0 chr1 227515295 227515507 -15148846 + MSTB LTR MaLR 215 426 0 9775 158 12 13 chr1 227515507 227517160 -15147193 + MSTA-int LTR MaLR 1 1651 0 2272 126 78 41 chr1 227517160 227517502 -15146851 + MSTA LTR MaLR 1 362 -66 1717 182 28 0 chr1 227517502 227517788 -15146565 - AluJb SINE Alu -18 294 1 2272 126 78 41 chr1 227517788 227517858 -15146495 + MSTA LTR MaLR 362 428 0 999 236 18 64 chr1 227517860 227518187 -15146166 + L1ME1 LINE L1 5834 6145 -21 797 237 119 22 chr1 227518224 227518731 -15145622 - MLT1E2 LTR MaLR 0 624 1 1957 184 15 3 chr1 227518817 227519159 -15145194 - MER7A DNA MER2_type -2 344 1 423 316 6 18 chr1 227520022 227520190 -15144163 + MIR SINE MIR 15 180 -82 3513 125 37 52 chr1 227520236 227520827 -15143526 + MER54B LTR ERVL 1 582 -211 1107 113 83 0 chr1 227520831 227520999 -15143354 - MER54B LTR ERVL -329 464 283 718 128 9 9 chr1 227520999 227521108 -15143245 + MER54B LTR ERVL 574 682 -111 5453 141 26 9 chr1 227521328 227522250 -15142103 - L1MA8 LINE L1 -2 6289 5352 29 0 0 0 chr1 227522264 227522293 -15142060 + AT_rich Low_complexity Low_complexity 1 29 0 7510 144 59 28 chr1 227522293 227522831 -15141522 - L1MA5A LINE L1 -6 6291 5771 2466 87 3 0 chr1 227522831 227523140 -15141213 - AluSp SINE Alu -3 310 1 7510 144 59 28 chr1 227523140 227523244 -15141109 - L1MA5A LINE L1 -526 5771 5672 700 202 23 0 chr1 227523244 227523373 -15140980 - FLAM_C SINE Alu 0 133 2 7510 144 59 28 chr1 227523373 227524927 -15139426 - L1MA5A LINE L1 -625 5672 4016 400 341 80 19 chr1 227525576 227525890 -15138463 + L2 LINE L2 2373 2705 -609 2911 166 6 18 chr1 227525915 227526464 -15137889 - L1MA6 LINE L1 0 6300 5759 2447 93 0 0 chr1 227526510 227526812 -15137541 - AluSg SINE Alu -8 302 1 1000 144 46 6 chr1 227526848 227527022 -15137331 - L1MA6 LINE L1 -511 5789 5609 438 20 0 0 chr1 227527028 227527079 -15137274 + (CA)n Simple_repeat Simple_repeat 2 52 0 575 314 102 18 chr1 227527183 227527632 -15136721 + L2 LINE L2 2827 3313 0 287 289 40 60 chr1 227529062 227529211 -15135142 - MIR SINE MIR -44 218 73 493 250 62 21 chr1 227529251 227529395 -15134958 + MIR SINE MIR 1 150 -112 7027 203 21 25 chr1 227529395 227530275 -15134078 + L1MB3 LINE L1 3734 4616 -1567 1466 155 117 15 chr1 227530275 227530540 -15133813 - AluJo SINE Alu -20 292 1 7027 203 21 25 chr1 227530540 227531566 -15132787 + L1MB3 LINE L1 4616 5628 -555 1999 121 3 52 chr1 227531567 227531816 -15132537 + MER2 DNA MER2_type 32 292 -53 189 0 0 0 chr1 227531816 227531837 -15132516 + (CA)n Simple_repeat Simple_repeat 2 22 0 2178 103 0 20 chr1 227531846 227532146 -15132207 - AluSq SINE Alu -19 294 1 1999 121 3 52 chr1 227532146 227532216 -15132137 + MER2 DNA MER2_type 300 345 0 2119 140 0 0 chr1 227532216 227532538 -15131815 + L1MB3 LINE L1 5688 6009 -174 846 206 0 12 chr1 227532538 227532703 -15131650 - FRAM SINE Alu -2 164 2 1161 193 106 4 chr1 227532707 227532972 -15131381 - AluJo SINE Alu -9 303 12 819 152 21 7 chr1 227532984 227533129 -15131224 + L1MB3 LINE L1 6006 6152 -31 21 0 0 0 chr1 227533137 227533158 -15131195 + AT_rich Low_complexity Low_complexity 1 21 0 201 240 93 27 chr1 227533158 227533233 -15131120 + MIR SINE MIR 163 242 -20 2506 84 0 0 chr1 227533799 227534107 -15130246 - AluY SINE Alu -3 308 1 1300 245 39 23 chr1 227534175 227534559 -15129794 - MLT1B LTR MaLR 0 390 1 234 299 110 8 chr1 227534753 227534880 -15129473 + MIR SINE MIR 56 195 -67 3689 163 30 28 chr1 227534931 227535397 -15128956 - L1MB3 LINE L1 -2 6181 5717 423 0 0 0 chr1 227535397 227535444 -15128909 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2074 106 11 7 chr1 227535444 227535726 -15128627 - AluSx SINE Alu -29 283 1 3689 163 30 28 chr1 227535726 227535964 -15128389 - L1MB3 LINE L1 -465 5718 5475 1688 182 4 4 chr1 227536041 227536321 -15128032 - AluJo SINE Alu -30 282 3 1067 158 30 0 chr1 227536324 227536526 -15127827 - L1MB3 LINE L1 -682 5492 5285 2279 112 0 7 chr1 227536788 227537093 -15127260 + AluSx SINE Alu 1 303 -9 626 257 7 14 chr1 227537202 227537346 -15127007 - MLT1K LTR MaLR -38 550 408 2175 144 0 3 chr1 227538030 227538343 -15126010 + AluJb SINE Alu 1 312 0 2443 75 3 0 chr1 227538790 227539098 -15125255 - AluY SINE Alu -1 310 2 8047 29 0 140 chr1 227539132 227540350 -15124003 - SVA Other Other -339 1047 1 255 31 0 0 chr1 227540350 227540382 -15123971 + (GGGAGA)n Simple_repeat Simple_repeat 2 33 0 2972 39 11 3 chr1 227540558 227540915 -15123438 - L1PA5 LINE L1 -6 6148 5789 265 206 44 29 chr1 227541399 227541467 -15122886 + MLT1K LTR MaLR 516 584 -4 287 268 89 42 chr1 227542540 227542708 -15121645 - L2 LINE L2 0 3313 3138 32 0 0 0 chr1 227543677 227543709 -15120644 + AT_rich Low_complexity Low_complexity 1 32 0 1697 184 0 7 chr1 227543709 227543997 -15120356 - AluJb SINE Alu -26 286 1 1187 284 25 14 chr1 227544268 227544624 -15119729 + L1MD2 LINE L1 6000 6359 0 2375 106 0 0 chr1 227544632 227544944 -15119409 + AluSx SINE Alu 1 312 0 230 366 120 6 chr1 227544986 227545461 -15118892 - L2 LINE L2 -370 2944 2416 457 352 47 29 chr1 227545579 227546091 -15118262 - L1M4 LINE L1 -1354 4792 4272 433 125 34 28 chr1 227546091 227546267 -15118086 + (TTTAA)n Simple_repeat Simple_repeat 4 180 0 29 0 0 0 chr1 227546268 227546297 -15118056 + AT_rich Low_complexity Low_complexity 1 29 0 544 278 95 74 chr1 227546298 227546409 -15117944 - L1M4 LINE L1 -1711 4933 4826 562 196 0 0 chr1 227546409 227546521 -15117832 - FLAM_A SINE Alu -19 114 3 544 278 95 74 chr1 227546521 227547439 -15116914 - L1M4 LINE L1 -1818 4826 3882 304 302 10 0 chr1 227547497 227547593 -15116760 + L1MEc LINE L1 1975 2071 -4325 654 73 0 0 chr1 227547669 227547751 -15116602 - AluS SINE Alu -230 83 2 1398 253 35 22 chr1 227547751 227548154 -15116199 - L1MCb LINE L1 -5637 408 1 1262 268 69 47 chr1 227548178 227548422 -15115931 - L1ME LINE L1 -4877 1769 1532 189 0 0 0 chr1 227548422 227548443 -15115910 + (TCC)n Simple_repeat Simple_repeat 3 23 0 1262 268 69 47 chr1 227548443 227549060 -15115293 - L1ME LINE L1 -5114 1532 882 492 314 75 44 chr1 227549384 227549773 -15114580 - L1ME LINE L1 -5625 1009 609 268 150 0 0 chr1 227549793 227549833 -15114520 - MSTB LTR MaLR 0 426 387 2014 166 80 3 chr1 227550582 227550955 -15113398 - MSTB LTR MaLR -24 402 1 605 234 29 47 chr1 227551724 227551895 -15112458 - AluJo SINE Alu -23 289 122 3112 178 69 45 chr1 227551895 227552184 -15112169 - L1MD1 LINE L1 -24 6218 5937 1756 122 7 58 chr1 227552184 227552462 -15111891 + AluSx SINE Alu 32 295 -17 3112 178 69 45 chr1 227552462 227552879 -15111474 - L1MD1 LINE L1 -305 5937 5495 478 290 3 11 chr1 227552943 227553094 -15111259 - L1 LINE L1 -2025 4121 3972 485 72 181 4 chr1 227553148 227553242 -15111111 - L1MC/D LINE L1 -723 5826 5768 823 113 0 16 chr1 227553253 227553377 -15110976 - AluSg/x SINE Alu -3 309 188 1835 78 0 0 chr1 227553377 227553596 -15110757 - AluSq SINE Alu -94 219 1 589 118 82 0 chr1 227553597 227553707 -15110646 - L1MC/D LINE L1 -847 5789 5671 216 0 0 0 chr1 227553707 227553731 -15110622 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 600 171 0 18 chr1 227553734 227553845 -15110508 - FRAM SINE Alu -32 144 36 4468 237 38 15 chr1 227553845 227555113 -15109240 - L1MC/D LINE L1 -868 5672 4376 5218 201 114 99 chr1 227555117 227556200 -15108153 - L1MC/D LINE L1 -4260 2280 1023 715 191 0 23 chr1 227556200 227556331 -15108022 + AluSq/x SINE Alu 7 134 -178 5218 201 114 99 chr1 227556331 227557198 -15107155 - L1MC/D LINE L1 -5517 1023 170 1724 143 4 0 chr1 227557198 227557457 -15106896 - MLT1B LTR MaLR 0 390 131 * 2009 158 127 6 chr1 227557453 227557814 -15106539 + LTR32 LTR ERVL 67 471 0 631 164 139 8 chr1 227557814 227557935 -15106418 - MLT1B LTR MaLR -253 137 1 914 153 73 0 chr1 227557935 227558085 -15106268 - L1MC/D LINE L1 -6366 174 14 21 0 0 0 chr1 227558209 227558230 -15106123 + AT_rich Low_complexity Low_complexity 1 21 0 841 149 0 15 chr1 227559778 227559912 -15104441 - FLAM_C SINE Alu 0 133 2 201 356 30 44 chr1 227560281 227560416 -15103937 + L2 LINE L2 3138 3270 -2 316 296 48 24 chr1 227560512 227560637 -15103716 - L2 LINE L2 -8 3264 3137 2621 47 0 0 chr1 227562382 227562680 -15101673 - AluY SINE Alu -13 298 1 2080 163 9 9 chr1 227562909 227563258 -15101095 + MLT2D LTR ERVL 1 349 -65 28 29 0 0 chr1 227563264 227563299 -15101054 + AT_rich Low_complexity Low_complexity 1 35 0 828 79 0 35 chr1 227563308 227563422 -15100931 - FLAM_C SINE Alu -33 110 1 497 93 0 155 chr1 227563423 227563463 -15100890 + MLT2D LTR ERVL 333 351 -63 216 0 0 0 chr1 227563463 227563487 -15100866 + (CA)n Simple_repeat Simple_repeat 2 25 0 497 93 0 155 chr1 227563487 227563543 -15100810 + MLT2D LTR ERVL 351 414 0 1723 156 44 0 chr1 227564440 227564715 -15099638 + AluJb SINE Alu 1 287 -25 1630 288 113 43 chr1 227564760 227565590 -15098763 + HAL1 LINE L1 1 888 -1619 * 1693 252 66 78 chr1 227565588 227566061 -15098292 + HAL1 LINE L1 1492 1969 -538 1849 146 0 52 chr1 227566061 227566390 -15097963 - AluJb SINE Alu 0 312 1 1693 252 66 78 chr1 227566390 227566783 -15097570 + HAL1 LINE L1 1969 2349 -158 1085 184 0 12 chr1 227566783 227566951 -15097402 + FRAM SINE Alu 1 166 0 1693 252 66 78 chr1 227566951 227566987 -15097366 + HAL1 LINE L1 2349 2384 -123 946 260 49 52 chr1 227567096 227567241 -15097112 + MLT1F LTR MaLR 32 177 -365 2240 103 7 3 chr1 227567241 227567541 -15096812 - AluSx SINE Alu -11 301 1 946 260 49 52 chr1 227567541 227567681 -15096672 + MLT1F LTR MaLR 177 316 -226 4524 156 29 10 chr1 227567681 227568449 -15095904 + MER49 LTR ERV1 1 782 -141 501 265 7 26 chr1 227568818 227568969 -15095384 + LTR7 LTR ERV1 303 450 0 847 152 0 22 chr1 227568992 227569130 -15095223 + MER49 LTR ERV1 789 923 0 694 236 31 0 chr1 227569130 227569291 -15095062 + MLT1F LTR MaLR 342 507 -60 351 252 108 7 chr1 227569693 227569832 -15094521 + L1ME4a LINE L1 5967 6119 -2 2346 98 0 7 chr1 227570049 227570355 -15093998 + AluSx SINE Alu 1 304 -8 290 333 0 9 chr1 227570867 227570972 -15093381 + MIR SINE MIR 104 207 -55 363 136 61 30 chr1 227572365 227572431 -15091922 + AluJ/FRAM SINE Alu 230 297 -5 181 235 118 0 chr1 227572517 227572568 -15091785 + MIR SINE MIR 74 130 -132 299 237 52 81 chr1 227572790 227572963 -15091390 - MIR SINE MIR -47 215 48 2196 99 0 20 chr1 227572991 227573295 -15091058 - AluSc SINE Alu -11 298 1 831 173 23 8 chr1 227573309 227573442 -15090911 - AluJo SINE Alu -176 136 2 28 0 0 0 chr1 227573571 227573599 -15090754 + AT_rich Low_complexity Low_complexity 1 28 0 1058 161 99 5 chr1 227573621 227573813 -15090540 - AluJo SINE Alu -102 210 1 520 228 0 0 chr1 227574147 227574248 -15090105 - MLT1B LTR MaLR -47 343 243 239 353 101 17 chr1 227575039 227575158 -15089195 + MIR SINE MIR 19 147 -61 1315 201 37 30 chr1 227575724 227576023 -15088330 + AluJo SINE Alu 1 301 -11 198 0 0 0 chr1 227577362 227577384 -15086969 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 23 78 0 0 chr1 227578755 227578806 -15085547 + GC_rich Low_complexity Low_complexity 1 51 0 249 83 0 0 chr1 227579029 227579065 -15085288 + (CGG)n Simple_repeat Simple_repeat 2 37 0 213 39 0 0 chr1 227579993 227580019 -15084334 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 455 221 38 30 chr1 227580068 227580199 -15084154 - MIR SINE MIR -22 240 109 442 252 98 53 chr1 227581359 227582828 -15081525 - L1MC5 LINE L1 -48 7913 6491 2274 148 29 0 chr1 227582828 227583179 -15081174 - MER46B DNA MER2_type 0 236 1 442 252 98 53 chr1 227583179 227583405 -15080948 - L1MC5 LINE L1 -1470 6491 6277 1687 134 88 61 chr1 227583408 227583447 -15080906 - THE1C LTR MaLR 0 355 319 2027 89 4 4 chr1 227583447 227583704 -15080649 + AluSx SINE Alu 35 291 -21 1687 134 88 61 chr1 227583704 227584056 -15080297 - THE1C LTR MaLR -36 319 1 5030 122 62 32 chr1 227584056 227584560 -15079793 - THE1C-int LTR MaLR 0 1580 1038 2075 131 0 3 chr1 227584560 227584858 -15079495 - AluSx SINE Alu -15 297 1 5030 122 62 32 chr1 227584858 227585203 -15079150 - THE1C-int LTR MaLR -542 1038 705 4292 106 190 93 chr1 227585209 227586621 -15077732 - pTR5 LTR ERV1 0 2438 743 2765 198 31 0 chr1 227586621 227587141 -15077212 - THE1C-int LTR MaLR -887 764 229 2913 142 168 17 chr1 227587254 227587797 -15076556 - MER51A LTR ERV1 -9 625 1 609 246 9 49 chr1 227587798 227588022 -15076331 - L1MC4 LINE L1 -1 8041 7827 2142 127 13 0 chr1 227588119 227588427 -15075926 + AluSx SINE Alu 1 312 0 1132 256 47 64 chr1 227588585 227588798 -15075555 + L1MEc LINE L1 715 930 -5466 2132 95 28 3 chr1 227588798 227589082 -15075271 - AluSg SINE Alu -19 291 1 1132 256 47 64 chr1 227589082 227589304 -15075049 + L1MEc LINE L1 930 1142 -5254 1845 171 7 10 chr1 227589304 227589447 -15074906 + AluJb SINE Alu 2 144 -168 2246 110 10 0 chr1 227589447 227589757 -15074596 + AluSp SINE Alu 1 313 0 1845 171 7 10 chr1 227589757 227589922 -15074431 + AluJb SINE Alu 144 309 -3 1132 256 47 64 chr1 227589922 227590035 -15074318 + L1MEc LINE L1 1142 1255 -5141 2709 204 114 61 chr1 227590051 227590466 -15073887 + L1MC4 LINE L1 6702 7094 -948 2236 117 0 0 chr1 227590466 227590765 -15073588 + AluSx SINE Alu 1 299 -13 2709 204 114 61 chr1 227590765 227591237 -15073116 + L1MC4 LINE L1 7094 7636 -406 * 6362 125 18 50 chr1 227591235 227592991 -15071362 + L1MA5 LINE L1 4557 6248 -52 1962 128 3 26 chr1 227592991 227593296 -15071057 + AluSq SINE Alu 1 298 -15 6362 125 18 50 chr1 227593296 227593346 -15071007 + L1MA5 LINE L1 6248 6298 -2 274 208 0 0 chr1 227593373 227593421 -15070932 + L1MC4 LINE L1 7623 7670 -372 1514 204 78 0 chr1 227593442 227593761 -15070592 - MER2 DNA MER2_type 0 345 2 1901 158 3 3 chr1 227593811 227594109 -15070244 - AluJo SINE Alu -14 298 1 978 212 65 34 chr1 227594123 227594416 -15069937 + L1MC4 LINE L1 7740 8041 -1 354 106 38 0 chr1 227595223 227595285 -15069068 + MSTC LTR MaLR 3 72 -354 1338 183 132 0 chr1 227595531 227595788 -15068565 + AluJo SINE Alu 1 291 -21 34 93 0 0 chr1 227596375 227596472 -15067881 + AT_rich Low_complexity Low_complexity 1 97 0 28 0 0 0 chr1 227596722 227596750 -15067603 + AT_rich Low_complexity Low_complexity 1 28 0 2502 260 25 82 chr1 227596832 227597977 -15066376 - L2 LINE L2 -1 3312 2236 1792 204 87 8 chr1 227597977 227598344 -15066009 - MSTD LTR MaLR 0 396 1 2502 260 25 82 chr1 227598344 227598404 -15065949 - L2 LINE L2 -1077 2236 2174 5263 227 36 17 chr1 227598408 227599894 -15064459 + L1MA6 LINE L1 1957 3036 -4516 23 33 0 0 chr1 227599970 227600000 -15064353 + AT_rich Low_complexity Low_complexity 1 30 0 16487 168 17 39 chr1 227600078 227601189 -15063164 + L1P5 LINE L1 3 1136 -5731 2201 119 0 13 chr1 227601189 227601492 -15062861 + AluSx SINE Alu 1 299 -13 16487 168 17 39 chr1 227601492 227602976 -15061377 + L1P5 LINE L1 1136 2650 -4217 1204 105 6 6 chr1 227602976 227603148 -15061205 - AluSg/x SINE Alu -19 291 120 16487 168 17 39 chr1 227603148 227603326 -15061027 + L1P5 LINE L1 2650 2830 -4037 2199 116 3 3 chr1 227603326 227603627 -15060726 + AluSq SINE Alu 1 301 -12 1915 173 0 10 chr1 227603636 227603949 -15060404 + AluSx SINE Alu 3 312 0 16487 168 17 39 chr1 227603949 227607627 -15056726 + L1P5 LINE L1 2838 6495 -372 414 0 0 0 chr1 227607628 227607674 -15056679 + (TG)n Simple_repeat Simple_repeat 2 47 0 682 100 0 0 chr1 227607688 227607778 -15056575 + L1 LINE L1 4054 4143 -2003 * 14417 178 27 50 chr1 227607777 227608001 -15056352 + L1MA6 LINE L1 3584 3812 -3907 2357 100 0 0 chr1 227608001 227608300 -15056053 + AluSc SINE Alu 1 299 -10 14417 178 27 50 chr1 227608300 227608782 -15055571 + L1MA6 LINE L1 3812 4304 -3415 10373 52 7 78 chr1 227608782 227610266 -15054087 + SVA Other Other 7 1386 0 14417 178 27 50 chr1 227610266 227610847 -15053506 + L1MA6 LINE L1 4304 4897 -2822 2311 113 0 0 chr1 227610847 227611147 -15053206 + AluSx SINE Alu 1 300 -12 14417 178 27 50 chr1 227611147 227611619 -15052734 + L1MA6 LINE L1 4897 5378 -2341 1754 188 14 0 chr1 227611619 227611912 -15052441 + AluJb SINE Alu 1 297 -15 14417 178 27 50 chr1 227611912 227612430 -15051923 + L1MA6 LINE L1 5378 5907 -1812 1968 162 0 7 chr1 227612430 227612733 -15051620 + AluSx SINE Alu 1 301 -11 14417 178 27 50 chr1 227612733 227612764 -15051589 + L1MA6 LINE L1 5907 5937 -1782 2328 99 0 0 chr1 227612764 227613058 -15051295 + AluSc SINE Alu 1 294 -15 14417 178 27 50 chr1 227613058 227613446 -15050907 + L1MA6 LINE L1 5937 6333 -1386 1971 122 57 7 chr1 227613446 227613567 -15050786 + AluSx SINE Alu 2 115 -197 248 77 26 0 chr1 227613567 227613606 -15050747 + (TA)n Simple_repeat Simple_repeat 2 41 0 1971 122 57 7 chr1 227613606 227613780 -15050573 + AluSx SINE Alu 115 312 0 14417 178 27 50 chr1 227613780 227614015 -15050338 + L1MA6 LINE L1 6333 6572 -1147 1725 162 45 0 chr1 227614015 227614280 -15050073 + AluSx SINE Alu 5 281 -31 663 156 101 0 chr1 227614171 227614280 -15050073 + AluSc SINE Alu 159 318 0 361 0 0 0 chr1 227614280 227614320 -15050033 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 14417 178 27 50 chr1 227614320 227614749 -15049604 + L1MA6 LINE L1 6571 7008 -711 910 119 0 0 chr1 227614749 227614868 -15049485 + FLAM_C SINE Alu 1 118 -15 460 0 0 0 chr1 227614868 227614919 -15049434 + (TAAAA)n Simple_repeat Simple_repeat 5 90 0 14417 178 27 50 chr1 227614919 227615770 -15048583 + L1MA6 LINE L1 7008 7719 0 378 180 213 27 chr1 227615786 227615936 -15048417 - L2 LINE L2 -1481 1833 1656 230 257 27 0 chr1 227616257 227616331 -15048022 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 1224 137 21 50 chr1 227616331 227616448 -15047905 - Tigger1 DNA MER2_type -1 2417 2309 2303 82 10 0 chr1 227616448 227616741 -15047612 + AluY SINE Alu 1 296 -15 1224 137 21 50 chr1 227616741 227616864 -15047489 - Tigger1 DNA MER2_type -109 2309 2184 196 289 19 0 chr1 227617479 227617531 -15046822 + L2 LINE L2 2597 2649 -665 198 351 9 35 chr1 227617707 227617821 -15046532 + L2 LINE L2 2748 2858 -456 359 256 87 34 chr1 227618958 227619210 -15045143 + MLT1F LTR MaLR 219 531 -11 275 336 22 44 chr1 227619327 227619381 -15044972 + MLT1F-int LTR MaLR 279 333 -1038 3946 100 44 10 chr1 227619381 227619969 -15044384 - MER4B LTR ERV1 -2 608 1 275 336 22 44 chr1 227619969 227620143 -15044210 + MLT1F-int LTR MaLR 333 502 -869 2280 186 95 4 chr1 227620195 227620722 -15043631 + L1MB2 LINE L1 5595 6169 -2 233 220 0 0 chr1 227620853 227620903 -15043450 + MLT1F-int LTR MaLR 607 656 -715 308 229 60 0 chr1 227621332 227621415 -15042938 - L1MD3 LINE L1 -35 7960 7873 296 274 131 6 chr1 227621417 227621439 -15042914 - L1MCc LINE L1 -4905 2217 2199 213 39 0 0 chr1 227621439 227621465 -15042888 + (TC)n Simple_repeat Simple_repeat 2 27 0 296 274 131 6 chr1 227621465 227621617 -15042736 - L1MCc LINE L1 -4923 2199 2021 408 243 18 74 chr1 227621621 227621980 -15042373 - L1MCc LINE L1 -4887 1536 1355 1778 124 0 52 chr1 227621980 227622161 -15042192 - AluJb SINE Alu 0 312 150 2425 77 3 0 chr1 227622161 227622458 -15041895 - AluY SINE Alu -13 298 1 1778 124 0 52 chr1 227622458 227622566 -15041787 - AluJb SINE Alu -162 150 38 408 243 18 74 chr1 227622566 227622605 -15041748 - L1MCc LINE L1 -5068 1355 1315 468 288 7 7 chr1 227622792 227622945 -15041408 - L1MCc LINE L1 -5104 1319 1167 1630 112 5 9 chr1 227623125 227623371 -15040982 - AluSg SINE Alu 0 306 62 525 339 31 21 chr1 227623765 227624146 -15040207 - L1MCc LINE L1 -6014 409 25 338 205 146 20 chr1 227624155 227624306 -15040047 - L1ME4a LINE L1 -227 5894 5725 355 307 150 8 chr1 227625025 227625152 -15039201 + L2 LINE L2 3128 3272 0 2165 110 0 0 chr1 227625509 227625791 -15038562 - AluY SINE Alu -15 296 15 27 62 0 0 chr1 227626073 227626121 -15038232 + AT_rich Low_complexity Low_complexity 1 48 0 4061 6 0 0 chr1 227626457 227626930 -15037423 - L1PA3 LINE L1 -282 5873 5401 2571 14 0 0 chr1 227626930 227627223 -15037130 + L1PA3 LINE L1 5862 6155 0 206 95 24 0 chr1 227627229 227627271 -15037082 + (TAAAAA)n Simple_repeat Simple_repeat 4 46 0 2496 150 36 2 chr1 227629403 227629817 -15034536 - MSTA LTR MaLR 0 428 1 2287 94 7 0 chr1 227630383 227630681 -15033672 - AluY SINE Alu -11 300 1 838 193 56 20 chr1 227631687 227631884 -15032469 + MER63A DNA MER1_type 7 210 0 589 271 48 12 chr1 227632247 227632413 -15031940 + MIR3 SINE MIR 21 192 -16 1475 133 91 0 chr1 227632494 227632758 -15031595 + L1MB2 LINE L1 5645 5932 -239 894 138 0 0 chr1 227632760 227632883 -15031470 + FLAM_C SINE Alu 1 123 -20 366 23 0 0 chr1 227632886 227632929 -15031424 + (TA)n Simple_repeat Simple_repeat 2 44 0 912 123 141 0 chr1 227632929 227633099 -15031254 + L1MB2 LINE L1 5935 6128 -43 1749 83 9 4 chr1 227633101 227633329 -15031024 + AluSq SINE Alu 1 229 -84 24 0 0 0 chr1 227633643 227633667 -15030686 + AT_rich Low_complexity Low_complexity 1 24 0 1488 154 49 69 chr1 227633949 227634255 -15030098 - AluSx SINE Alu 0 312 13 935 291 20 10 chr1 227634982 227635284 -15029069 + L2 LINE L2 2148 2452 -862 378 156 31 0 chr1 227635359 227635423 -15028930 + AluJb SINE Alu 1 66 -236 804 117 0 0 chr1 227635438 227635558 -15028795 - L1PA16 LINE L1 -330 5836 5717 1160 167 11 0 chr1 227635580 227635766 -15028587 + AluJb SINE Alu 71 258 -54 3419 144 71 66 chr1 227635784 227635958 -15028395 - L1MB3 LINE L1 -143 6040 5868 2019 109 20 23 chr1 227635958 227636261 -15028092 - AluY SINE Alu -9 302 1 3419 144 71 66 chr1 227636261 227636539 -15027814 - L1MB3 LINE L1 -315 5868 5593 2447 146 57 0 chr1 227636539 227636964 -15027389 - L1PA16 LINE L1 -1 6165 5717 3419 144 71 66 chr1 227636964 227637402 -15026951 - L1MB3 LINE L1 -590 5593 5146 2106 124 7 3 chr1 227637990 227638289 -15026064 + AluSx SINE Alu 1 300 -12 588 189 9 0 chr1 227638345 227638451 -15025902 - AluJb SINE Alu -205 107 1 376 264 33 0 chr1 227639104 227639195 -15025158 + MIR SINE MIR 57 150 -112 232 297 31 0 chr1 227639620 227639684 -15024669 - L2 LINE L2 -39 3233 3168 771 277 76 24 chr1 227639738 227639971 -15024382 - MIR SINE MIR 0 262 14 954 226 0 17 chr1 227639971 227640152 -15024201 + MER45A DNA AcHobo 1 178 0 771 277 76 24 chr1 227640152 227640167 -15024186 - MIR SINE MIR -248 14 1 438 300 75 12 chr1 227640369 227640538 -15023815 - MIR SINE MIR -63 145 16 2311 90 3 10 chr1 227641528 227641829 -15022524 + AluSq SINE Alu 1 299 -14 584 281 92 17 chr1 227641860 227642098 -15022255 - MLT1J2 LTR MaLR -119 331 76 265 301 21 11 chr1 227642194 227642287 -15022066 + MIR SINE MIR 61 154 -108 1549 185 38 50 chr1 227642651 227643073 -15021280 - L1MC4 LINE L1 -3 8039 7623 23 0 0 0 chr1 227643073 227643096 -15021257 + AT_rich Low_complexity Low_complexity 1 23 0 1419 167 57 4 chr1 227643096 227643377 -15020976 - L1MC2 LINE L1 -54 6290 5995 333 136 99 25 chr1 227643381 227643462 -15020891 - L1MC2 LINE L1 -443 5901 5815 * 570 210 0 0 chr1 227643454 227643578 -15020775 - L1MC4 LINE L1 -395 7647 7524 685 298 92 20 chr1 227643870 227644514 -15019839 + HAL1b LINE L1 158 847 -501 358 296 13 30 chr1 227644779 227645012 -15019341 + L1M4 LINE L1 2130 2358 -3788 2283 76 0 3 chr1 227645102 227645393 -15018960 - AluY SINE Alu -21 290 1 486 265 30 78 chr1 227645397 227645615 -15018738 + L1MEc LINE L1 940 1138 -5258 1870 171 7 10 chr1 227645615 227645758 -15018595 + AluJb SINE Alu 2 144 -168 2250 110 10 0 chr1 227645758 227646068 -15018285 + AluSp SINE Alu 1 313 0 1870 171 7 10 chr1 227646068 227646233 -15018120 + AluJb SINE Alu 144 309 -3 486 265 30 78 chr1 227646233 227646346 -15018007 + L1MEc LINE L1 1138 1255 -5141 2339 206 114 61 chr1 227646362 227646777 -15017576 + L1MC4 LINE L1 6702 7094 -948 2239 117 0 0 chr1 227646777 227647076 -15017277 + AluSx SINE Alu 1 299 -13 2339 206 114 61 chr1 227647076 227647548 -15016805 + L1MC4 LINE L1 7094 7636 -406 * 5813 126 18 50 chr1 227647546 227649302 -15015051 + L1MA5 LINE L1 4557 6248 -52 1971 128 3 26 chr1 227649302 227649607 -15014746 + AluSq SINE Alu 1 298 -15 5813 126 18 50 chr1 227649607 227649657 -15014696 + L1MA5 LINE L1 6248 6298 -2 252 208 0 0 chr1 227649684 227649732 -15014621 + L1MD3 LINE L1 7715 7762 -233 1377 204 78 0 chr1 227649753 227650072 -15014281 - MER2 DNA MER2_type 0 345 2 1924 158 3 3 chr1 227650122 227650420 -15013933 - AluJo SINE Alu -14 298 1 854 213 69 31 chr1 227650434 227650725 -15013628 + L1MC4 LINE L1 7740 8041 -1 329 106 38 0 chr1 227651532 227651594 -15012759 + MSTC LTR MaLR 3 72 -354 1358 183 132 0 chr1 227651840 227652097 -15012256 + AluJo SINE Alu 1 291 -21 34 93 0 0 chr1 227652684 227652781 -15011572 + AT_rich Low_complexity Low_complexity 1 97 0 28 0 0 0 chr1 227653031 227653059 -15011294 + AT_rich Low_complexity Low_complexity 1 28 0 2542 260 24 82 chr1 227653141 227654287 -15010066 - L2 LINE L2 -1 3312 2236 1654 202 87 8 chr1 227654287 227654654 -15009699 - MSTD LTR MaLR 0 396 1 2542 260 24 82 chr1 227654654 227654714 -15009639 - L2 LINE L2 -1077 2236 2174 4878 234 36 17 chr1 227654718 227656287 -15008066 + L1M3de LINE L1 1124 2372 -4360 15534 127 28 12 chr1 227656384 227657495 -15006858 + L1PBa LINE L1 3 1096 -5767 2223 118 0 13 chr1 227657495 227657799 -15006554 + AluSx SINE Alu 1 300 -12 15534 127 28 12 chr1 227657799 227659282 -15005071 + L1PBa LINE L1 1096 2642 -4221 2174 107 3 0 chr1 227659282 227659573 -15004780 - AluY SINE Alu -19 292 1 15534 127 28 12 chr1 227659573 227659644 -15004709 + L1PBa LINE L1 2642 2710 -4153 1566 183 38 50 chr1 227660086 227660508 -15003845 - L1MC4 LINE L1 -3 8039 7623 23 0 0 0 chr1 227660508 227660531 -15003822 + AT_rich Low_complexity Low_complexity 1 23 0 1419 167 57 4 chr1 227660531 227660812 -15003541 - L1MC2 LINE L1 -54 6290 5995 333 136 99 25 chr1 227660816 227660897 -15003456 - L1MC2 LINE L1 -443 5901 5815 * 570 210 0 0 chr1 227660889 227661013 -15003340 - L1MC4 LINE L1 -395 7647 7524 685 298 92 20 chr1 227661305 227661949 -15002404 + HAL1b LINE L1 158 847 -501 358 296 13 30 chr1 227662214 227662447 -15001906 + L1M3de LINE L1 2716 2944 -3788 2298 69 0 3 chr1 227662537 227662828 -15001525 - AluY SINE Alu -21 290 1 989 308 71 30 chr1 227662837 227663728 -15000625 + L1M3de LINE L1 3512 4438 -2294 2050 213 66 25 chr1 227663733 227663785 -15000568 - MLT2B1 LTR ERVL 0 520 472 1943 158 17 26 chr1 227663785 227663860 -15000493 + MER7A DNA MER2_type 2 76 -2962 2349 25 42 11 chr1 227663860 227664145 -15000208 - AluY SINE Alu -17 294 1 1943 158 17 26 chr1 227664145 227664417 -14999936 + MER7A DNA MER2_type 76 344 -2 2050 213 66 25 chr1 227664417 227664852 -14999501 - MLT2B1 LTR ERVL -48 472 13 269 239 61 71 chr1 227664882 227665079 -14999274 + L1P LINE L1 3875 4069 -2077 254 91 0 0 chr1 227665087 227665131 -14999222 - L1MA3 LINE L1 0 6305 6262 2079 58 29 11 chr1 227665274 227665548 -14998805 + AluSc SINE Alu 1 317 0 343 0 0 0 chr1 227665548 227665586 -14998767 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 486 303 105 71 chr1 227665594 227665974 -14998379 - HAL1 LINE L1 -2049 458 66 228 338 113 50 chr1 227666588 227666828 -14997525 + L2 LINE L2 2837 3091 -181 1608 162 101 37 chr1 227667072 227667448 -14996905 + Tigger6a DNA MER2_type 2 401 -682 1791 167 26 56 chr1 227667491 227667757 -14996596 + Tigger6a DNA MER2_type 388 638 -959 1743 150 0 11 chr1 227667757 227668031 -14996322 + AluJo SINE Alu 7 277 -35 1791 167 26 56 chr1 227668031 227668194 -14996159 + Tigger6a DNA MER2_type 638 804 -279 2127 125 30 3 chr1 227668196 227668499 -14995854 - AluSx SINE Alu -1 311 1 2490 61 0 0 chr1 227668509 227668806 -14995547 - AluY SINE Alu -14 297 1 2377 82 7 7 chr1 227668909 227669215 -14995138 - AluSq SINE Alu -7 306 1 998 167 52 52 chr1 227669693 227669861 -14994492 + Tigger6a DNA MER2_type 814 984 -613 2091 123 0 7 chr1 227669861 227670153 -14994200 + AluSx SINE Alu 1 290 -22 998 167 52 52 chr1 227670153 227670254 -14994099 + Tigger6a DNA MER2_type 983 1083 0 460 250 25 8 chr1 227670256 227670376 -14993977 - L2 LINE L2 -19 3294 3173 268 311 60 20 chr1 227670941 227671092 -14993261 + MLT1L LTR MaLR 48 204 -411 230 226 38 0 chr1 227671195 227671248 -14993105 + CT-rich Low_complexity Low_complexity 5 59 0 2613 100 19 3 chr1 227671869 227672238 -14992115 - THE1C LTR MaLR 0 375 1 10173 122 21 13 chr1 227672238 227673805 -14990548 - THE1C-int LTR MaLR 0 1580 1 2551 116 14 3 chr1 227673806 227674176 -14990177 - THE1C LTR MaLR -1 374 1 1697 181 80 0 chr1 227674665 227675003 -14989350 - MLT1A1 LTR MaLR 0 365 1 320 384 80 27 chr1 227675123 227675250 -14989103 - MIR SINE MIR -2 260 114 1900 158 0 3 chr1 227675250 227675541 -14988812 - AluJb SINE Alu -22 290 1 320 384 80 27 chr1 227675541 227675637 -14988716 - MIR SINE MIR -148 114 25 460 266 91 13 chr1 227675943 227676208 -14988145 - L1ME LINE L1 -513 5608 5322 9485 184 19 7 chr1 227676208 227676492 -14987861 - L1PA15 LINE L1 -3 6162 5883 2255 124 30 28 chr1 227676492 227676855 -14987498 + THE1B LTR MaLR 1 364 0 9485 184 19 7 chr1 227676855 227677714 -14986639 - L1PA15 LINE L1 -282 5883 5036 2405 73 3 3 chr1 227677714 227678015 -14986338 - AluY SINE Alu -10 301 1 9485 184 19 7 chr1 227678015 227679551 -14984802 - L1PA15 LINE L1 -1129 5036 3442 1192 224 25 17 chr1 227679551 227679904 -14984449 - L1PA15 LINE L1 -3288 2858 2503 1485 135 149 0 chr1 227679915 227680197 -14984156 - Tigger1 DNA MER2_type -1937 481 158 41 87 0 0 chr1 227680225 227680329 -14984024 + AT_rich Low_complexity Low_complexity 1 104 0 206 335 92 40 chr1 227680784 227680936 -14983417 - MIR3 SINE MIR -45 163 4 786 259 90 19 chr1 227683050 227683262 -14981091 - MIR SINE MIR 0 262 36 381 333 119 8 chr1 227683295 227683547 -14980806 + HAL1 LINE L1 1139 1418 -1089 1825 46 0 0 chr1 227683556 227683773 -14980580 + AluY SINE Alu 87 303 -8 249 273 62 39 chr1 227683856 227683984 -14980369 + HAL1 LINE L1 1521 1651 -856 2181 99 7 7 chr1 227684026 227684319 -14980034 + AluSg SINE Alu 1 293 -17 470 179 241 0 chr1 227684687 227684799 -14979554 + AluSq/x SINE Alu 1 139 -174 24 0 0 0 chr1 227684803 227684827 -14979526 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr1 227684897 227684923 -14979430 + (CA)n Simple_repeat Simple_repeat 2 27 0 263 224 109 54 chr1 227684944 227685091 -14979262 + L1M4 LINE L1 3540 3694 -2452 1712 163 14 3 chr1 227685117 227685406 -14978947 - AluJb SINE Alu -17 295 4 312 289 16 8 chr1 227685527 227685648 -14978705 - L1M4 LINE L1 -2309 3837 3716 411 320 122 0 chr1 227685671 227685852 -14978501 - L1ME LINE L1 -411 5759 5557 2481 86 0 0 chr1 227686673 227686974 -14977379 + AluSq SINE Alu 1 301 -12 867 143 0 0 chr1 227686999 227687125 -14977228 + FLAM_C SINE Alu 1 126 -17 28 29 0 0 chr1 227687125 227687160 -14977193 + AT_rich Low_complexity Low_complexity 1 35 0 414 239 73 29 chr1 227687339 227687544 -14976809 - L1MC4a LINE L1 -1919 5889 5676 338 312 30 10 chr1 227687702 227687904 -14976449 - L1ME LINE L1 -312 5809 5604 378 69 69 0 chr1 227687913 227687971 -14976382 - L1PA7 LINE L1 -3 6151 6090 3203 147 18 31 chr1 227687993 227688612 -14975741 - L1PB4 LINE L1 -14 6142 5532 25 0 0 0 chr1 227688640 227688665 -14975688 + AT_rich Low_complexity Low_complexity 1 25 0 1685 146 75 0 chr1 227688665 227688933 -14975420 - AluJb SINE Alu -23 289 2 304 321 58 36 chr1 227689245 227689469 -14974884 - HERVL LTR ERVL -2995 2659 2431 922 351 30 14 chr1 227689469 227689899 -14974454 - HERVL LTR ERVL -3308 2456 2020 979 194 42 51 chr1 227692516 227692733 -14971620 - MER20 DNA MER1_type -4 215 1 2494 57 0 3 chr1 227693187 227693487 -14970866 + AluY SINE Alu 1 299 -12 474 261 92 29 chr1 227693615 227693921 -14970432 - L1ME4a LINE L1 -104 6017 5693 405 326 34 0 chr1 227694045 227694223 -14970130 + L1M4 LINE L1 4742 4925 -1221 359 310 42 11 chr1 227694231 227694492 -14969861 + L1M4 LINE L1 4970 5238 -908 2368 115 0 0 chr1 227694527 227694839 -14969514 - AluSx SINE Alu 0 312 1 1100 246 99 49 chr1 227694839 227695077 -14969276 - L2 LINE L2 -6 3307 3082 2460 175 30 12 chr1 227695077 227695573 -14968780 - MLT1D LTR MaLR 0 505 1 1100 246 99 49 chr1 227695573 227695980 -14968373 - L2 LINE L2 -231 3082 2631 932 226 186 31 chr1 227695987 227696434 -14967919 - MLT1H1 LTR MaLR -8 547 32 472 260 24 0 chr1 227696443 227696566 -14967787 - L2 LINE L2 -681 2633 2508 981 212 10 5 chr1 227696583 227696781 -14967572 - MLT1B LTR MaLR -4 386 188 436 189 98 42 chr1 227696902 227697045 -14967308 - MLT1B LTR MaLR -220 170 20 1975 224 128 33 chr1 227697055 227697694 -14966659 - L2 LINE L2 -820 2494 1795 206 247 136 0 chr1 227697677 227697758 -14966595 + L2 LINE L2 3172 3263 -9 * 2274 107 0 31 chr1 227697826 227698143 -14966210 + AluSg SINE Alu 1 307 -3 187 158 18 18 chr1 227698196 227698253 -14966100 + (TA)n Simple_repeat Simple_repeat 2 58 0 2167 186 71 22 chr1 227698298 227698995 -14965358 - L1MB8 LINE L1 -2 6176 5427 1608 133 42 4 chr1 227699353 227699617 -14964736 - AluSx SINE Alu -1 311 38 1716 113 51 27 chr1 227699753 227700046 -14964307 + AluJb SINE Alu 1 300 -12 208 222 30 126 chr1 227701173 227701308 -14963045 - L2 LINE L2 -4 3268 3147 733 219 101 18 chr1 227701372 227701591 -14962762 - MIR SINE MIR -1 261 25 213 239 299 0 chr1 227703253 227703320 -14961033 + L2 LINE L2 3137 3223 -49 249 189 19 0 chr1 227703480 227703533 -14960820 - MLT1F1 LTR MaLR -70 472 419 938 258 43 18 chr1 227703616 227703895 -14960458 - MLT1F1 LTR MaLR -281 286 1 2067 57 38 92 chr1 227703976 227704292 -14960061 + AluY SINE Alu 1 299 -12 1238 108 0 0 chr1 227704297 227704464 -14959889 + AluSg/x SINE Alu 129 295 -17 1661 148 30 30 chr1 227704516 227704821 -14959532 - AluJb SINE Alu -7 305 1 196 268 268 0 chr1 227704915 227704986 -14959367 - L2 LINE L2 -15 3257 3168 294 340 60 20 chr1 227705026 227705126 -14959227 + L2 LINE L2 3122 3225 -47 259 98 0 0 chr1 227705424 227705465 -14958888 + L1MA9 LINE L1 6108 6148 -164 910 151 22 70 chr1 227705465 227705650 -14958703 + AluJo SINE Alu 126 301 -11 255 77 0 0 chr1 227705655 227705694 -14958659 + L1MA9 LINE L1 6177 6215 -97 585 0 0 0 chr1 227705695 227705760 -14958593 + (CA)n Simple_repeat Simple_repeat 2 66 0 1709 177 7 10 chr1 227705767 227706066 -14958287 - AluJb SINE Alu -14 298 1 243 139 0 0 chr1 227706067 227706110 -14958243 + L1MA9 LINE L1 6269 6311 -1 1980 105 0 102 chr1 227706642 227706974 -14957379 - AluSx SINE Alu -14 298 1 1701 228 38 59 chr1 227707178 227707792 -14956561 - L1MC4 LINE L1 -2 8040 7440 227 305 126 97 chr1 227707808 227708077 -14956276 - L2 LINE L2 -483 2831 2555 239 233 96 14 chr1 227708356 227708429 -14955924 - L2 LINE L2 -5 3267 3189 2050 133 0 0 chr1 227710403 227710703 -14953650 - AluSc SINE Alu -8 301 2 2039 144 0 0 chr1 227711032 227711338 -14953015 + AluJb SINE Alu 1 306 -6 240 306 204 6 chr1 227711537 227711694 -14952659 + L2 LINE L2 1814 2001 -1313 1457 137 0 5 chr1 227712312 227712523 -14951830 + AluJb SINE Alu 91 300 -12 1176 130 97 5 chr1 227712871 227713087 -14951266 - MER46A DNA MER2_type 0 236 1 2070 118 40 3 chr1 227713476 227713772 -14950581 + AluSx SINE Alu 1 307 -5 269 241 179 0 chr1 227713836 227713948 -14950405 - L1MEc LINE L1 -2647 3568 3437 2070 194 109 116 chr1 227713950 227715312 -14949041 - L1MEc LINE L1 -3225 2990 1677 1618 280 20 8 chr1 227715313 227715803 -14948550 - L1MEc LINE L1 -5861 535 40 2206 74 0 3 chr1 227716482 227716767 -14947586 + AluSg SINE Alu 9 292 -18 1137 125 94 58 chr1 227716907 227717131 -14947222 - MER46A DNA MER2_type 0 236 5 257 325 138 0 chr1 227719382 227719505 -14944848 - MIR SINE MIR -55 207 68 263 238 26 99 chr1 227719633 227719784 -14944569 + L2 LINE L2 3119 3258 -55 1127 265 59 28 chr1 227720213 227720639 -14943714 - MLT1J1 LTR MaLR -4 442 4 2417 103 0 0 chr1 227720956 227721268 -14943085 - AluSx SINE Alu 0 312 1 2437 57 30 0 chr1 227721415 227721711 -14942642 - AluY SINE Alu -6 305 1 371 326 44 7 chr1 227721878 227722013 -14942340 - MIR3 SINE MIR -61 147 8 407 291 211 23 chr1 227722033 227722470 -14941883 - L2 LINE L2 -661 2653 2135 1793 102 98 0 chr1 227722752 227722998 -14941355 + AluSg SINE Alu 11 280 -30 1805 163 25 64 chr1 227723408 227723814 -14940539 - MLT1B LTR MaLR 0 390 1 248 246 0 18 chr1 227724233 227724290 -14940063 + CT-rich Low_complexity Low_complexity 5 60 0 27 0 0 65 chr1 227724630 227724676 -14939677 + AT_rich Low_complexity Low_complexity 1 43 0 317 351 86 15 chr1 227724892 227725123 -14939230 + MIR SINE MIR 5 256 -6 1451 137 43 133 chr1 227725264 227725586 -14938767 + AluJo SINE Alu 1 293 -19 1882 134 43 13 chr1 227725594 227725893 -14938460 + AluSx SINE Alu 3 310 -2 2350 174 34 31 chr1 227726167 227726720 -14937633 - L1MB7 LINE L1 -19 6165 5611 2524 80 3 0 chr1 227727254 227727566 -14936787 - AluSp SINE Alu 0 313 1 21 0 0 0 chr1 227727875 227727896 -14936457 + AT_rich Low_complexity Low_complexity 1 21 0 457 259 132 29 chr1 227728414 227728588 -14935765 + MIR SINE MIR 53 244 -18 2777 139 35 26 chr1 227728632 227729172 -14935181 + L1MB3 LINE L1 5635 6179 -4 22 0 0 0 chr1 227729788 227729810 -14934543 + AT_rich Low_complexity Low_complexity 1 22 0 463 341 43 0 chr1 227730429 227730640 -14933713 - L2 LINE L2 -463 2851 2632 436 307 274 16 chr1 227730652 227731202 -14933151 - L2 LINE L2 -910 2404 1713 678 215 34 98 chr1 227731435 227731761 -14932592 - LTR41 LTR ERVL -7 766 462 369 247 133 12 chr1 227731910 227732076 -14932277 - LTR41 LTR ERVL -587 186 1 43 35 0 0 chr1 227732324 227732381 -14931972 + AT_rich Low_complexity Low_complexity 1 57 0 2256 78 0 4 chr1 227732898 227733209 -14931144 - AluY SINE Alu 0 310 1 232 167 0 0 chr1 227733255 227733297 -14931056 + L1PB4 LINE L1 6107 6148 -8 2210 86 3 0 chr1 227733544 227733859 -14930494 - AluY SINE Alu 0 316 1 30 27 0 0 chr1 227733915 227733952 -14930401 + AT_rich Low_complexity Low_complexity 1 37 0 2336 77 0 10 chr1 227734001 227734299 -14930054 - AluSq SINE Alu -18 295 1 1242 120 0 0 chr1 227734374 227734541 -14929812 - AluSq SINE Alu -146 167 1 744 280 30 10 chr1 227735117 227735317 -14929036 - MIR SINE MIR -52 210 7 233 226 36 71 chr1 227735356 227735440 -14928913 + MIR SINE MIR 155 235 -27 252 214 29 19 chr1 227735703 227735806 -14928547 + (TTAA)n Simple_repeat Simple_repeat 3 106 0 30 45 0 0 chr1 227735806 227735850 -14928503 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 227736414 227736436 -14927917 + AT_rich Low_complexity Low_complexity 1 22 0 235 217 17 133 chr1 227736485 227736605 -14927748 + MIR3 SINE MIR 69 174 -34 186 368 98 40 chr1 227736703 227736877 -14927476 + L2 LINE L2 2865 3048 -224 848 223 29 44 chr1 227736923 227737129 -14927224 - MIR SINE MIR -1 261 59 264 311 49 80 chr1 227737102 227737452 -14926901 - L2 LINE L2 -1713 1601 1263 * 264 321 60 0 chr1 227737864 227737948 -14926405 - L3 LINE CR1 -23 1554 1466 2353 111 0 0 chr1 227739025 227739331 -14925022 + AluSg SINE Alu 1 306 -4 44 46 0 0 chr1 227739637 227739702 -14924651 + AT_rich Low_complexity Low_complexity 1 65 0 2021 138 3 3 chr1 227740430 227740726 -14923627 - AluSx SINE Alu -16 296 1 2905 217 70 42 chr1 227740806 227741760 -14922593 + L1M4 LINE L1 2185 3176 -2970 1941 102 47 4 chr1 227741760 227742035 -14922318 + AluSx SINE Alu 1 287 -25 2905 217 70 42 chr1 227742035 227742199 -14922154 + L1M4 LINE L1 3176 3334 -2812 1845 122 0 0 chr1 227742202 227742449 -14921904 - AluSx SINE Alu -65 247 1 572 163 0 0 chr1 227742457 227742543 -14921810 - FLAM SINE Alu -18 125 40 1449 109 0 0 chr1 227742698 227742890 -14921463 - AluSx SINE Alu -119 193 2 3204 89 2 16 chr1 227742984 227743434 -14920919 - MLT2A1 LTR ERVL 0 444 1 3737 20 11 0 chr1 227743914 227744359 -14919994 + L1PA2 LINE L1 5706 6155 0 737 287 49 13 chr1 227744499 227744806 -14919547 + ERVL-B1 LTR ERVL 5118 5435 -329 2410 73 7 0 chr1 227744864 227745167 -14919186 - AluSp SINE Alu -8 305 1 582 209 130 28 chr1 227745902 227746117 -14918236 + L1MC4a LINE L1 5357 5593 -2215 301 276 28 48 chr1 227746137 227746285 -14918068 + L1MC4a LINE L1 5681 5780 -341 2288 102 0 0 chr1 227746285 227746580 -14917773 + AluSq SINE Alu 1 295 -18 301 276 28 48 chr1 227746580 227746625 -14917728 + L1MC4a LINE L1 5780 5824 -297 2066 104 20 7 chr1 227746951 227747248 -14917105 - AluSc SINE Alu -8 301 1 193 227 0 23 chr1 227747421 227747465 -14916888 - L2 LINE L2 -2063 1251 1209 417 272 69 58 chr1 227747679 227747852 -14916501 - L1ME3A LINE L1 -206 5956 5782 1926 122 0 11 chr1 227747964 227748234 -14916119 - AluSx SINE Alu -45 267 1 5653 256 105 48 chr1 227748265 227749588 -14914765 + L2 LINE L2 780 2027 -1286 880 188 36 18 chr1 227749588 227749753 -14914600 + FAM SINE Alu 1 168 -7 5653 256 105 48 chr1 227749753 227749933 -14914420 + L2 LINE L2 2027 2195 -1118 2263 120 0 0 chr1 227749933 227750234 -14914119 + AluSx SINE Alu 1 301 -11 5653 256 105 48 chr1 227750234 227751135 -14913218 + L2 LINE L2 2195 3307 -6 418 271 179 0 chr1 227751135 227751159 -14913194 - L1ME3A LINE L1 -439 5731 5713 2006 108 0 69 chr1 227751159 227751499 -14912854 - AluSx SINE Alu 0 319 1 418 271 179 0 chr1 227751499 227751538 -14912815 - L1ME3A LINE L1 -457 5713 5684 1715 202 90 50 chr1 227751538 227751809 -14912544 + MLT2B1 LTR ERVL 1 260 -260 2274 111 0 3 chr1 227751809 227752115 -14912238 + AluSq SINE Alu 1 305 -8 1715 202 90 50 chr1 227752115 227752299 -14912054 + MLT2B1 LTR ERVL 260 435 -85 324 0 0 0 chr1 227752299 227752335 -14912018 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr1 227752334 227752358 -14911995 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 1715 202 90 50 chr1 227752335 227752401 -14911952 + MLT2B1 LTR ERVL 435 520 0 418 271 179 0 chr1 227752401 227752579 -14911774 - L1ME3A LINE L1 -486 5684 5508 1937 170 0 0 chr1 227752622 227752922 -14911431 - AluJo SINE Alu -12 300 1 229 250 29 0 chr1 227752968 227753036 -14911317 - MER116 DNA Mariner -10 70 1 451 176 18 91 chr1 227753228 227753393 -14910960 - L1MB8 LINE L1 -120 6058 5906 1603 76 0 9 chr1 227753409 227753619 -14910734 - AluY SINE Alu -103 208 1 1180 112 29 10 chr1 227753657 227753863 -14910490 - L1MB8 LINE L1 -292 5886 5677 2472 88 0 0 chr1 227753875 227754181 -14910172 - AluSp SINE Alu -7 306 1 180 0 0 0 chr1 227754186 227754206 -14910147 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1967 139 7 3 chr1 227754210 227754498 -14909855 - AluSx SINE Alu -23 289 1 1579 174 30 15 chr1 227754511 227754845 -14909508 - L1M4 LINE L1 -1880 4266 3928 594 220 160 0 chr1 227755589 227755789 -14908564 - L1M4 LINE L1 -2200 3946 3715 495 283 35 82 chr1 227756059 227756253 -14908100 - L1ME4a LINE L1 -53 6068 5866 2360 88 0 16 chr1 227756253 227756559 -14907794 - AluSx SINE Alu -11 301 1 495 283 35 82 chr1 227756559 227756855 -14907498 - L1ME4a LINE L1 -255 5866 5601 21 82 0 0 chr1 227757447 227757496 -14906857 + AT_rich Low_complexity Low_complexity 1 49 0 343 226 72 72 chr1 227757518 227757823 -14906530 + L1MC5 LINE L1 7620 7924 -37 198 164 33 16 chr1 227757843 227757904 -14906449 + GA-rich Low_complexity Low_complexity 1 62 0 189 0 0 0 chr1 227758072 227758093 -14906260 + (CA)n Simple_repeat Simple_repeat 2 22 0 181 295 49 0 chr1 227758230 227758291 -14906062 - MIR SINE MIR -122 140 77 2274 95 7 0 chr1 227758294 227758590 -14905763 + AluSg SINE Alu 1 298 -12 1047 167 24 63 chr1 227758738 227758990 -14905363 - MLT1C LTR MaLR -225 242 1 2112 103 10 3 chr1 227759089 227759380 -14904973 - AluSc SINE Alu -16 293 1 1122 130 0 6 chr1 227759384 227759553 -14904800 - AluSg/x SINE Alu -8 302 135 311 65 22 0 chr1 227759858 227759904 -14904449 + (GA)n Simple_repeat Simple_repeat 1 47 0 1839 166 10 0 chr1 227760548 227760849 -14903504 + AluJo SINE Alu 1 304 -8 282 118 0 0 chr1 227760945 227760996 -14903357 - Alu SINE Alu 0 301 251 347 297 58 47 chr1 227761853 227762208 -14902145 - L1MC4a LINE L1 -1901 5907 5548 2405 84 0 0 chr1 227762208 227762505 -14901848 + AluSq SINE Alu 1 297 -16 310 279 20 14 chr1 227762534 227762679 -14901674 - L1MC4a LINE L1 -752 5399 5254 7107 26 0 1 chr1 227763073 227763904 -14900449 + L1PA3 LINE L1 5326 6155 0 1489 174 19 19 chr1 227763988 227764299 -14900054 - L1MB7 LINE L1 0 6184 5874 1265 170 49 15 chr1 227764485 227764781 -14899572 - L1MB7 LINE L1 -302 5882 5586 2373 83 0 0 chr1 227764898 227765198 -14899155 + AluSg SINE Alu 1 300 -10 2389 157 51 18 chr1 227765378 227765868 -14898485 + L1MB3 LINE L1 5668 6173 -10 23 0 0 0 chr1 227767027 227767050 -14897303 + AT_rich Low_complexity Low_complexity 1 23 0 2368 100 0 0 chr1 227767050 227767351 -14897002 - AluSc SINE Alu -8 301 1 1263 77 0 12 chr1 227767356 227767525 -14896828 - L1PA11 LINE L1 -1 6173 6007 1501 151 118 26 chr1 227768161 227768465 -14895888 - MER44D DNA MER2_type -7 602 1 2675 134 21 5 chr1 227768517 227768936 -14895417 - MSTB LTR MaLR 0 426 1 2607 55 0 0 chr1 227769190 227769499 -14894854 + AluY SINE Alu 1 309 -2 258 218 23 23 chr1 227771311 227771398 -14892955 + (TA)n Simple_repeat Simple_repeat 1 87 0 1897 144 3 14 chr1 227772649 227772940 -14891413 - AluSx SINE Alu -24 288 1 2169 114 0 7 chr1 227773308 227773607 -14890746 - AluSg SINE Alu -8 302 6 21 57 0 0 chr1 227773698 227773733 -14890620 + AT_rich Low_complexity Low_complexity 1 35 0 612 186 73 98 chr1 227774924 227774967 -14889386 - L1MA9 LINE L1 -8 6304 6261 2041 121 7 13 chr1 227774967 227775265 -14889088 + AluSq SINE Alu 1 296 -17 1975 116 0 0 chr1 227775269 227775528 -14888825 + AluSc SINE Alu 35 293 -16 612 186 73 98 chr1 227775528 227775683 -14888670 - L1MA9 LINE L1 -54 6258 6106 448 212 0 12 chr1 227775726 227775811 -14888542 - FLAM_A SINE Alu -48 94 11 1281 140 88 20 chr1 227775819 227776069 -14888284 - L1MA9 LINE L1 -204 6108 5842 232 294 67 63 chr1 227777814 227778078 -14886275 - L1MC/D LINE L1 -1995 5813 5548 2288 85 3 0 chr1 227778078 227778371 -14885982 + AluSg SINE Alu 1 294 -16 340 292 31 12 chr1 227778400 227778606 -14885747 - L1MC/D LINE L1 -747 5399 5191 7211 28 0 2 chr1 227778939 227779771 -14884582 + L1PA3 LINE L1 5326 6155 0 1531 177 19 19 chr1 227779855 227780166 -14884187 - L1MB7 LINE L1 0 6184 5874 330 132 162 0 chr1 227780352 227780420 -14883933 - L1MB7 LINE L1 -292 5882 5804 1274 14 0 0 chr1 227780422 227780565 -14883788 - L1PA3 LINE L1 -151 6004 5862 * 4333 6 0 0 chr1 227780564 227781037 -14883316 + L1PA3 LINE L1 5401 5873 -282 27 62 0 0 chr1 227781373 227781421 -14882932 + AT_rich Low_complexity Low_complexity 1 48 0 2178 110 0 0 chr1 227781703 227781985 -14882368 + AluY SINE Alu 15 296 -15 303 307 150 8 chr1 227782342 227782469 -14881884 - L2 LINE L2 0 3272 3128 2259 104 3 3 chr1 227784108 227784405 -14879948 - AluSq SINE Alu -16 297 1 432 239 18 18 chr1 227784884 227784997 -14879356 + MLT1I LTR MaLR 22 134 -275 30 27 0 0 chr1 227786012 227786049 -14878304 + AT_rich Low_complexity Low_complexity 1 37 0 2221 94 0 3 chr1 227786071 227786357 -14877996 + AluSx SINE Alu 1 285 -27 285 29 0 0 chr1 227786360 227786394 -14877959 + (CA)n Simple_repeat Simple_repeat 2 35 0 2170 168 8 35 chr1 227786967 227787365 -14876988 - MLT1B LTR MaLR 0 390 4 360 317 71 40 chr1 227787771 227787995 -14876358 + MIR SINE MIR 15 245 -17 1708 136 24 41 chr1 227788014 227788308 -14876045 - AluJo SINE Alu -23 289 1 6870 78 26 34 chr1 227788628 227789710 -14874643 - L1PA14 LINE L1 0 6161 5072 2316 109 3 3 chr1 227789710 227790022 -14874331 - AluSx SINE Alu 0 312 1 6870 78 26 34 chr1 227790022 227790470 -14873883 - L1PA14 LINE L1 -1089 5072 4640 2119 119 0 0 chr1 227790470 227790747 -14873606 - AluSx SINE Alu -35 277 1 6870 78 26 34 chr1 227790747 227791139 -14873214 - L1PA14 LINE L1 -1521 4640 4246 2323 101 0 0 chr1 227791188 227791485 -14872868 + AluSq SINE Alu 1 297 -16 1477 187 4 16 chr1 227791743 227792000 -14872353 - AluJo SINE Alu -21 291 38 222 260 110 62 chr1 227793130 227793276 -14871077 + MIR SINE MIR 64 216 -46 762 148 49 0 chr1 227794180 227794302 -14870051 - FLAM_C SINE Alu -2 131 4 655 110 0 0 chr1 227794318 227794409 -14869944 - AluSp/q SINE Alu -20 293 203 2016 159 25 6 chr1 227794412 227794765 -14869588 - L1MC2 LINE L1 -22 6322 5963 2731 105 11 0 chr1 227795766 227796137 -14868216 + THE1C LTR MaLR 1 375 0 933 84 13 19 chr1 227796853 227797008 -14867345 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 2280 86 4 0 chr1 227797008 227797288 -14867065 - AluSq SINE Alu -32 281 1 27 49 0 0 chr1 227797298 227797339 -14867014 + AT_rich Low_complexity Low_complexity 1 41 0 882 295 48 6 chr1 227797414 227797729 -14866624 - MLT1J LTR MaLR -7 504 177 783 296 56 31 chr1 227798077 227798401 -14865952 - MLT1I LTR MaLR -6 403 72 666 257 110 4 chr1 227799247 227799484 -14864869 + MIR SINE MIR 1 262 0 996 183 55 73 chr1 227799551 227799652 -14864701 - L1MB2 LINE L1 -4 6167 6066 2319 87 0 0 chr1 227799652 227799939 -14864414 - AluSc SINE Alu -22 287 1 996 183 55 73 chr1 227799939 227800110 -14864243 - L1MB2 LINE L1 -105 6066 5900 2229 269 54 3 chr1 227801107 227801703 -14862650 - MLT2E LTR ERVL -2 626 1 1854 170 14 0 chr1 227801972 227802254 -14862099 - AluJb SINE Alu -26 286 1 351 250 31 0 chr1 227802372 227802468 -14861885 + MER5B DNA MER1_type 2 100 -78 * 472 241 74 37 chr1 227802466 227802628 -14861725 - MIR SINE MIR -81 181 14 300 313 34 7 chr1 227802682 227802829 -14861524 - L2 LINE L2 -898 2416 2266 283 273 102 66 chr1 227803001 227803334 -14861019 - L2 LINE L2 -924 2390 2046 332 156 37 0 chr1 227803339 227803448 -14860905 + GA-rich Low_complexity Low_complexity 2 114 0 631 189 3 0 chr1 227803458 227803588 -14860765 - MLT2C1 LTR ERVL -20 394 246 1244 164 24 56 chr1 227803644 227803814 -14860539 - AluJb SINE Alu -37 275 114 6421 81 29 1 chr1 227803814 227805052 -14859301 + L1PA13 LINE L1 4877 6163 0 1244 164 24 56 chr1 227805052 227805131 -14859222 - AluJb SINE Alu -198 114 34 951 142 0 0 chr1 227805186 227805327 -14859026 - AluJo SINE Alu -35 277 137 225 65 0 0 chr1 227806116 227806147 -14858206 + (TG)n Simple_repeat Simple_repeat 1 31 0 25 31 0 0 chr1 227806366 227806398 -14857955 + GC_rich Low_complexity Low_complexity 1 32 0 222 219 4 0 chr1 227807211 227807274 -14857079 + MIR SINE MIR 92 140 -68 332 317 0 16 chr1 227807424 227807547 -14856806 + MIR SINE MIR 142 262 0 323 263 123 57 chr1 227807941 227808169 -14856184 - MIR SINE MIR -18 244 2 1881 164 17 0 chr1 227808223 227808515 -14855838 - AluJo SINE Alu -15 297 1 2288 88 3 0 chr1 227809423 227809707 -14854646 - AluSc SINE Alu -24 285 1 562 206 69 53 chr1 227809805 227809936 -14854417 - AluJo SINE Alu -169 133 1 469 179 74 0 chr1 227810729 227810824 -14853529 + Tigger3b DNA MER2_type 1 102 -1129 5926 108 38 11 chr1 227810827 227811750 -14852603 + Tigger3b DNA MER2_type 284 1231 0 237 294 0 43 chr1 227811996 227812088 -14852265 - MIR3 SINE MIR -1 207 120 2179 116 7 0 chr1 227812267 227812569 -14851784 + AluSx SINE Alu 1 304 -8 411 309 64 11 chr1 227812747 227812935 -14851418 + L3 LINE CR1 1374 1571 -6 2350 103 0 0 chr1 227813363 227813663 -14850690 - AluSx SINE Alu -12 300 1 1094 154 11 11 chr1 227814244 227814419 -14849934 + FAM SINE Alu 1 175 0 4585 49 0 4 chr1 227816273 227816827 -14847526 - L1PA8 LINE L1 -8 6164 5613 5024 163 34 14 chr1 227816830 227818225 -14846128 - L1PB4 LINE L1 -1 6155 4745 264 371 0 9 chr1 227819108 227819213 -14845140 + MIR SINE MIR 87 190 -72 683 229 5 86 chr1 227819431 227819641 -14844712 - MER46C DNA MER2_type -145 193 1 216 171 0 24 chr1 227819662 227819703 -14844650 + C-rich Low_complexity Low_complexity 5 44 0 1818 158 0 23 chr1 227820007 227820310 -14844043 - AluJo SINE Alu -10 302 7 3476 119 105 58 chr1 227820653 227821950 -14842403 - pTR5 LTR ERV1 0 2438 66 183 42 0 0 chr1 227822831 227822855 -14841498 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 257 250 45 76 chr1 227822971 227823103 -14841250 + MIR SINE MIR 135 262 0 335 299 122 34 chr1 227823119 227823266 -14841087 + MIR SINE MIR 61 220 -42 214 333 48 0 chr1 227823450 227823513 -14840840 + MER91 DNA MER1_type 131 196 0 350 268 57 49 chr1 227823814 227823937 -14840416 + LTR50 LTR ERVL 37 160 -635 400 218 11 0 chr1 227824247 227824334 -14840019 + LTR33A LTR ERVL 416 503 -20 3149 52 19 0 chr1 227825012 227825380 -14838973 - L1PA6 LINE L1 -10 6144 5770 542 219 53 20 chr1 227825394 227825545 -14838808 + L1M4 LINE L1 2537 2692 -3454 39963 77 5 17 chr1 227825582 227831700 -14832653 - L1PA5 LINE L1 -99 6055 11 215 186 68 0 chr1 227831780 227831839 -14832514 + (TTA)n Simple_repeat Simple_repeat 2 64 0 261 287 85 37 chr1 227832157 227832257 -14832096 - L1ME4a LINE L1 -202 5919 5806 2228 109 3 0 chr1 227832257 227832559 -14831794 - AluSx SINE Alu -9 303 1 261 287 85 37 chr1 227832559 227832622 -14831731 - L1ME4a LINE L1 -315 5806 5748 1223 228 66 62 chr1 227832667 227833105 -14831248 - MLT1J1 LTR MaLR 0 446 7 2036 137 67 40 chr1 227833815 227834217 -14830136 - L1MA7 LINE L1 0 6291 5879 5929 150 20 5 chr1 227834596 227836101 -14828252 - L1PB3 LINE L1 -6 6148 4623 * 5945 164 18 27 chr1 227836095 227839960 -14824393 - L1PA11 LINE L1 0 6489 2536 1878 113 80 4 chr1 227839960 227840235 -14824118 - AluSq SINE Alu -17 296 1 5945 164 18 27 chr1 227840235 227842183 -14822170 - L1PA11 LINE L1 -3953 2536 573 1623 185 60 39 chr1 227842190 227842457 -14821896 + L1M4c LINE L1 2121 2381 -4001 218 32 32 0 chr1 227842457 227842488 -14821865 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1623 185 60 39 chr1 227842488 227842845 -14821508 + L1M4c LINE L1 2381 2769 -3613 180 183 122 98 chr1 227843203 227843285 -14821068 + L2 LINE L2 3131 3214 -99 498 108 0 0 chr1 227843496 227843570 -14820783 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 560 313 28 11 chr1 227843577 227843756 -14820597 - MIR SINE MIR -75 187 6 1375 123 108 19 chr1 227843842 227844243 -14820110 + MLT1D LTR MaLR 1 505 0 * 4368 143 30 16 chr1 227844241 227845008 -14819345 + Tigger2 DNA MER2_type 1 778 -1940 1357 138 79 4 chr1 227845039 227845279 -14819074 + Tigger2 DNA MER2_type 2461 2718 0 724 239 38 38 chr1 227845492 227845705 -14818648 - L3 LINE CR1 -469 1108 896 180 0 0 0 chr1 227845789 227845809 -14818544 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 227847267 227847288 -14817065 + AT_rich Low_complexity Low_complexity 1 21 0 257 189 0 0 chr1 227847332 227847385 -14816968 - L1MA10 LINE L1 0 6334 6282 1044 154 12 0 chr1 227847386 227847548 -14816805 + AluSg/x SINE Alu 134 297 -15 506 189 118 77 chr1 227847626 227847795 -14816558 - L1MA10 LINE L1 -92 6242 6067 557 223 336 18 chr1 227847943 227848217 -14816136 - MER113 DNA MER1_type? -12 509 149 363 303 48 12 chr1 227848320 227848485 -14815868 - L3 LINE CR1 -244 1333 1163 1625 148 11 0 chr1 227848736 227849013 -14815340 + L1P LINE L1 5023 5302 -844 766 248 89 5 chr1 227849536 227849750 -14814603 + MIR SINE MIR 8 239 -23 190 340 112 27 chr1 227849911 227850099 -14814254 - L3 LINE CR1 -1302 275 72 305 322 17 70 chr1 227850615 227850787 -14813566 - MER5A DNA MER1_type -13 165 14 1008 163 11 28 chr1 227851148 227851326 -14813027 - FAM SINE Alu 0 175 1 719 245 83 10 chr1 227851809 227852031 -14812322 + MIR SINE MIR 14 249 -13 2192 119 3 0 chr1 227853835 227854138 -14810215 - AluSg SINE Alu -2 308 5 436 271 98 42 chr1 227854270 227854506 -14809847 - L3 LINE CR1 -931 646 398 505 269 38 85 chr1 227855473 227855685 -14808668 - MIR SINE MIR -7 255 54 2072 115 24 0 chr1 227855693 227855981 -14808372 + AluSx SINE Alu 2 296 -16 236 283 127 35 chr1 227856497 227856668 -14807685 - MIR SINE MIR -72 136 5 2343 56 7 36 chr1 227856669 227856971 -14807382 - AluY SINE Alu -18 293 1 24 32 0 0 chr1 227857436 227857467 -14806886 + AT_rich Low_complexity Low_complexity 1 31 0 2258 112 3 0 chr1 227857941 227858244 -14806109 + AluSx SINE Alu 1 304 -8 237 33 0 0 chr1 227859392 227859422 -14804931 + (TG)n Simple_repeat Simple_repeat 2 31 0 830 246 93 82 chr1 227859597 227859693 -14804660 - MER34 LTR ERV1 0 542 449 2278 99 0 13 chr1 227859693 227859995 -14804358 - AluSq SINE Alu -15 298 1 830 246 93 82 chr1 227859995 227860434 -14803919 - MER34 LTR ERV1 -93 449 1 424 231 131 12 chr1 227860437 227860597 -14803756 - MIR SINE MIR -28 234 56 1173 179 115 0 chr1 227860647 227860882 -14803471 - L1MD3 LINE L1 0 7995 7734 449 349 0 0 chr1 227861285 227861414 -14802939 - MER5B DNA MER1_type -10 168 40 785 133 0 0 chr1 227861421 227861534 -14802819 - AluJb SINE Alu -12 300 188 919 164 0 0 chr1 227862138 227862284 -14802069 - FAM SINE Alu -22 163 18 21 57 0 0 chr1 227862340 227862375 -14801978 + AT_rich Low_complexity Low_complexity 1 35 0 1027 92 0 0 chr1 227863306 227863437 -14800916 - THE1A LTR MaLR 0 355 225 2365 104 0 0 chr1 227863437 227863744 -14800609 - AluSg SINE Alu -1 309 3 11269 87 11 0 chr1 227863762 227865230 -14799123 - THE1A-int LTR MaLR -96 1484 1 2611 105 8 6 chr1 227865230 227865582 -14798771 - THE1A LTR MaLR 0 355 3 1400 142 13 0 chr1 227865736 227865962 -14798391 + L1MB3 LINE L1 5955 6183 0 182 358 49 12 chr1 227866694 227866775 -14797578 + L2 LINE L2 3125 3208 -64 2286 103 0 3 chr1 227867323 227867625 -14796728 - AluSx SINE Alu -9 303 3 2271 98 6 19 chr1 227869138 227869455 -14794898 + AluSq SINE Alu 1 313 0 364 288 81 12 chr1 227870048 227870208 -14794145 + MIR SINE MIR 20 190 -72 964 166 0 27 chr1 227870965 227871152 -14793201 - MIR SINE MIR -30 232 51 253 250 175 0 chr1 227873285 227873365 -14790988 + MIR SINE MIR 99 192 -70 530 196 0 7 chr1 227873562 227873700 -14790653 + (TG)n Simple_repeat Simple_repeat 1 137 0 203 369 164 0 chr1 227874081 227874295 -14790058 + L2 LINE L2 2424 2672 -642 229 295 0 0 chr1 227874297 227874358 -14789995 + MIR SINE MIR 183 243 -19 2149 167 0 17 chr1 227874572 227874919 -14789434 + MER7A DNA MER2_type 1 339 -7 241 293 70 38 chr1 227874926 227875083 -14789270 + L3 LINE CR1 1257 1418 -159 3021 213 21 38 chr1 227875332 227875433 -14788920 - MER82 DNA MER2_type -2 651 550 1857 135 16 39 chr1 227875433 227875744 -14788609 - AluJo SINE Alu -6 306 3 3021 213 21 38 chr1 227875744 227876304 -14788049 - MER82 DNA MER2_type -103 550 1 192 40 0 0 chr1 227876888 227876913 -14787440 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1246 239 70 91 chr1 227877453 227878183 -14786170 + L2 LINE L2 2447 3180 -133 2158 111 61 117 chr1 227878183 227878643 -14785710 + Tigger2a DNA MER2_type 1 434 0 1246 239 70 91 chr1 227878643 227878768 -14785585 + L2 LINE L2 3180 3306 -7 185 286 12 24 chr1 227878835 227878919 -14785434 - L2 LINE L2 -233 3039 2957 2641 77 43 8 chr1 227879002 227879354 -14784999 - THE1B LTR MaLR 0 364 1 208 298 115 39 chr1 227880325 227880429 -14783924 - L2 LINE L2 0 3272 3161 186 71 0 0 chr1 227880632 227880660 -14783693 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 329 255 19 19 chr1 227881797 227881903 -14782450 + MER5A DNA MER1_type 84 189 0 232 71 0 95 chr1 227882135 227882177 -14782176 + L2 LINE L2 3218 3255 -17 456 241 88 24 chr1 227882404 227882472 -14781881 - MER5A DNA MER1_type 0 189 127 2658 42 0 13 chr1 227882472 227882783 -14781570 + AluY SINE Alu 1 307 -4 456 241 88 24 chr1 227882783 227882884 -14781469 - MER5A DNA MER1_type -62 127 9 2088 71 0 19 chr1 227883047 227883314 -14781039 + AluSg SINE Alu 44 305 -5 4788 130 34 22 chr1 227885754 227886522 -14777831 + Ricksha_b DNA DNA 9 785 -469 820 187 5 70 chr1 227888134 227888321 -14776032 + AluJb SINE Alu 113 287 -25 198 0 0 0 chr1 227888324 227888346 -14776007 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2193 175 10 8 chr1 227888481 227888870 -14775483 - MLT1B LTR MaLR 0 390 1 2331 92 3 29 chr1 227889324 227889638 -14774715 - AluY SINE Alu -5 306 1 1737 218 85 38 chr1 227889817 227890299 -14774054 + MLT1D LTR MaLR 1 390 0 2310 242 55 85 chr1 227890337 227891674 -14772679 + L1M4 LINE L1 2 1530 -5116 403 118 0 52 chr1 227891674 227891827 -14772526 + (TA)n Simple_repeat Simple_repeat 2 146 0 1214 257 79 0 chr1 227891839 227892193 -14772160 + L1M4 LINE L1 4587 4968 -1676 810 210 48 5 chr1 227892233 227892419 -14771934 + L1M4 LINE L1 5300 5493 -1151 501 222 0 0 chr1 227892416 227892524 -14771829 + L1M1 LINE L1 5552 5659 -532 * 735 150 17 0 chr1 227892557 227892730 -14771623 + GA-rich Low_complexity Low_complexity 1 176 0 566 294 33 11 chr1 227892772 227892952 -14771401 - MLT1F1 LTR MaLR -383 184 1 325 308 11 11 chr1 227893061 227893152 -14771201 - MLT1K LTR MaLR -357 231 141 216 0 0 0 chr1 227894288 227894312 -14770041 + (A)n Simple_repeat Simple_repeat 1 24 0 219 139 0 0 chr1 227894652 227894688 -14769665 + (CA)n Simple_repeat Simple_repeat 1 36 0 391 199 28 2 chr1 227895421 227895521 -14768832 - L1ME LINE L1 -312 5809 5723 440 256 123 40 chr1 227895684 227895911 -14768442 + MIR SINE MIR 8 253 -9 1810 172 0 3 chr1 227895976 227896266 -14768087 - AluJb SINE Alu -23 289 1 238 324 93 14 chr1 227896268 227896407 -14767946 - L2 LINE L2 0 3272 3123 295 302 0 0 chr1 227896517 227896603 -14767750 + MIR SINE MIR 52 137 -125 195 218 36 18 chr1 227897536 227897591 -14766762 - L2 LINE L2 -9 3263 3208 1264 302 110 30 chr1 227897852 227898006 -14766347 - L1MC4 LINE L1 -4 8038 7898 1717 168 34 0 chr1 227898006 227898297 -14766056 - AluJb SINE Alu -7 305 5 1264 302 110 30 chr1 227898297 227898904 -14765449 - L1MC4 LINE L1 -144 7898 7216 2020 247 69 7 chr1 227898918 227899480 -14764873 - L1MC4 LINE L1 -971 7071 6475 1062 155 116 23 chr1 227900042 227900300 -14764053 + MLT1A1 LTR MaLR 5 286 -79 2345 100 3 0 chr1 227902282 227902591 -14761762 - AluSp SINE Alu -3 310 1 1544 169 52 0 chr1 227902723 227902995 -14761358 + AluJo SINE Alu 12 297 -15 329 316 38 30 chr1 227903078 227903211 -14761142 + L2 LINE L2 3180 3313 0 415 294 151 0 chr1 227903330 227903476 -14760877 + MIR SINE MIR 47 214 -48 2013 146 3 16 chr1 227904179 227904495 -14759858 - AluJo SINE Alu 0 312 1 233 241 0 69 chr1 227904953 227905040 -14759313 + MIR SINE MIR 126 206 -56 240 218 0 0 chr1 227905652 227905707 -14758646 + A-rich Low_complexity Low_complexity 1 55 0 2523 67 3 0 chr1 227905727 227906026 -14758327 + AluY SINE Alu 1 300 -11 814 189 58 146 chr1 227906904 227907164 -14757189 + MER8 DNA MER2_type 1 237 -2 260 243 81 54 chr1 227907867 227907978 -14756375 + MER112 DNA MER1_type 136 249 -11 1355 198 159 12 chr1 227909170 227909596 -14754757 + MER66B LTR ERV1 97 484 -2 462 169 68 33 chr1 227909781 227910001 -14754352 - LTR50 LTR ERVL -535 260 1 928 152 6 25 chr1 227911656 227911814 -14752539 + FRAM SINE Alu 1 155 -21 4697 38 4 0 chr1 227912708 227913267 -14751086 - L1PA4 LINE L1 -11 6144 5584 21 0 0 0 chr1 227913750 227913771 -14750582 + AT_rich Low_complexity Low_complexity 1 21 0 657 147 13 77 chr1 227914271 227914427 -14749926 - L1PA16 LINE L1 0 6166 6021 2017 169 138 7 chr1 227915025 227915432 -14748921 - MER66B LTR ERV1 0 486 27 371 345 40 23 chr1 227915744 227915921 -14748432 - MIR SINE MIR -82 180 1 196 314 0 14 chr1 227916166 227916236 -14748117 - MIR SINE MIR -170 92 24 2218 162 0 8 chr1 227917015 227917379 -14746974 - MER46B DNA MER2_type 0 236 1 1122 267 85 22 chr1 227918239 227918651 -14745702 + L2 LINE L2 2528 2965 -349 855 164 0 0 chr1 227918903 227919031 -14745322 + FLAM_C SINE Alu 1 128 -5 1475 179 72 17 chr1 227919038 227919328 -14745025 + AluJo SINE Alu 1 306 -6 845 188 46 18 chr1 227919623 227919850 -14744503 - MIR SINE MIR 0 262 34 39 22 0 0 chr1 227921448 227921494 -14742859 + AT_rich Low_complexity Low_complexity 1 46 0 2194 120 9 20 chr1 227921520 227921629 -14742724 - L1MA5A LINE L1 -10 6929 6820 2286 112 3 0 chr1 227921629 227921932 -14742421 - AluSq SINE Alu -9 304 1 2194 120 9 20 chr1 227921932 227922171 -14742182 - L1MA5A LINE L1 -119 6820 6585 2567 133 52 2 chr1 227922173 227922573 -14741780 + MSTB LTR MaLR 1 420 -6 9518 143 29 17 chr1 227922579 227923345 -14741008 - L1MA5A LINE L1 -352 6587 5832 1953 155 0 7 chr1 227923345 227923641 -14740712 - AluJb SINE Alu -18 294 1 9518 143 29 17 chr1 227923641 227925246 -14739107 - L1MA5A LINE L1 -1107 5832 4190 2629 188 8 23 chr1 227925235 227925708 -14738645 - L1MA5A LINE L1 -6323 466 1 * 21 0 0 0 chr1 227926031 227926052 -14738301 + AT_rich Low_complexity Low_complexity 1 21 0 403 290 99 0 chr1 227926988 227927150 -14737203 + MER5B DNA MER1_type 1 178 0 2255 133 14 63 chr1 227927833 227928278 -14736075 - L1MB3 LINE L1 -2 6181 5759 192 188 42 0 chr1 227928283 227928331 -14736022 - MIR SINE MIR -67 195 146 231 301 60 8 chr1 227928379 227928512 -14735841 - MIR SINE MIR -121 141 2 2905 116 19 9 chr1 227928585 227929009 -14735344 - MSTA LTR MaLR 0 428 1 9700 158 26 10 chr1 227929009 227930633 -14733720 - MSTA-int LTR MaLR 0 1651 1 2856 109 36 2 chr1 227930633 227931047 -14733306 - MSTA LTR MaLR 0 428 1 730 329 67 55 chr1 227931303 227931622 -14732731 + L2 LINE L2 1777 2091 -1223 807 180 0 0 chr1 227931622 227931750 -14732603 - FLAM_C SINE Alu -5 128 1 730 329 67 55 chr1 227931750 227932463 -14731890 + L2 LINE L2 2091 2821 -493 273 319 62 7 chr1 227932726 227932870 -14731483 + L2 LINE L2 3162 3313 0 396 0 0 0 chr1 227932926 227932970 -14731383 + (GA)n Simple_repeat Simple_repeat 1 44 0 335 292 8 42 chr1 227933092 227933212 -14731141 + MIR3 SINE MIR 54 169 -39 325 253 91 10 chr1 227934587 227934686 -14729667 + LTR16C LTR ERVL 385 491 0 1694 177 0 58 chr1 227935812 227936123 -14728230 + AluJo SINE Alu 1 293 -19 258 289 164 0 chr1 227938227 227938355 -14725998 - L2 LINE L2 0 3272 3124 704 133 11 44 chr1 227938476 227938657 -14725696 + T-rich Low_complexity Low_complexity 1 175 0 197 95 0 24 chr1 227938660 227938702 -14725651 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 1605 144 14 60 chr1 227938723 227939007 -14725346 - AluJo SINE Alu -41 271 1 315 315 47 0 chr1 227939253 227939380 -14724973 - MIR SINE MIR -109 153 21 277 329 36 12 chr1 227939513 227939680 -14724673 + MIR SINE MIR 20 190 -72 335 143 11 110 chr1 227940177 227940268 -14724085 + L2 LINE L2 3191 3272 0 358 216 232 0 chr1 227940711 227940836 -14723517 - L1ME4a LINE L1 -12 6109 5956 189 0 0 0 chr1 227941334 227941355 -14722998 + (A)n Simple_repeat Simple_repeat 1 21 0 659 208 8 16 chr1 227941388 227941513 -14722840 - FLAM_A SINE Alu -9 124 1 355 142 9 123 chr1 227942064 227942143 -14722210 - MER33 DNA MER1_type -2261 363 297 2185 134 0 0 chr1 227942143 227942448 -14721905 + AluSx SINE Alu 1 305 -7 355 142 9 123 chr1 227942448 227942474 -14721879 - MER33 DNA MER1_type -2327 297 270 1141 162 98 13 chr1 227942815 227943049 -14721304 - MER33 DNA MER1_type -70 254 1 1776 158 25 3 chr1 227943442 227943727 -14720626 - AluJo SINE Alu -16 296 6 573 289 166 16 chr1 227944759 227945320 -14719033 - L2 LINE L2 0 3313 2660 3230 151 28 23 chr1 227945326 227945936 -14718417 + L1MB3 LINE L1 5570 6182 -1 406 232 82 18 chr1 227946716 227946897 -14717456 - MER20 DNA MER1_type -18 201 1 315 305 216 6 chr1 227947046 227947256 -14717097 - MIR SINE MIR -5 257 5 1540 187 0 38 chr1 227947322 227947637 -14716716 - AluJo SINE Alu -9 303 1 720 195 0 0 chr1 227947646 227947774 -14716579 - FLAM_C SINE Alu -1 132 5 272 328 56 22 chr1 227947993 227948173 -14716180 + MIR SINE MIR 56 241 -21 2190 106 0 0 chr1 227948893 227949206 -14715147 - AluY SINE Alu 0 313 1 1510 188 42 11 chr1 227949503 227949790 -14714563 + AluJo SINE Alu 1 296 -16 1457 203 7 4 chr1 227952746 227953022 -14711331 - AluJo SINE Alu -14 298 22 242 176 0 135 chr1 227953329 227953403 -14710950 - MIR SINE MIR -81 181 118 4904 169 12 65 chr1 227954326 227955071 -14709282 + MER49 LTR ERV1 1 783 61 2548 62 7 0 chr1 227955071 227955379 -14708974 - AluY SINE Alu -1 310 1 4904 169 12 65 chr1 227955379 227955510 -14708843 + MER49 LTR ERV1 783 640 -82 2107 53 0 0 chr1 227955510 227955772 -14708581 + L1PA2 LINE L1 5894 6155 0 4904 169 12 65 chr1 227955772 227955852 -14708501 + MER49 LTR ERV1 639 722 0 448 36 0 0 chr1 227955979 227956035 -14708318 - AluY SINE Alu -253 57 2 1035 165 6 0 chr1 227956044 227956214 -14708139 - MLT1B LTR MaLR -219 171 1 664 285 30 42 chr1 227956514 227956777 -14707576 + MIR SINE MIR 3 262 0 277 250 29 0 chr1 227956779 227956847 -14707506 - MARNA DNA Mariner -475 111 42 26 30 0 0 chr1 227957400 227957433 -14706920 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr1 227959026 227959072 -14705281 + AT_rich Low_complexity Low_complexity 1 46 0 855 112 8 22 chr1 227959168 227959302 -14705051 - AluSq/x SINE Alu -181 132 1 670 234 65 15 chr1 227959757 227959958 -14704395 - L2 LINE L2 0 3313 3103 2283 108 0 0 chr1 227960825 227961121 -14703232 + AluSx SINE Alu 1 296 -16 1596 164 15 11 chr1 227961965 227962233 -14702120 - AluJo SINE Alu -43 269 1 1649 209 11 22 chr1 227962567 227962935 -14701418 - MLT1A1 LTR MaLR -1 364 1 290 26 26 0 chr1 227963326 227963365 -14700988 + (CA)n Simple_repeat Simple_repeat 2 41 0 365 268 134 42 chr1 227964618 227964902 -14699451 - L2 LINE L2 -84 3229 2920 690 220 0 0 chr1 227965064 227965241 -14699112 + CT-rich Low_complexity Low_complexity 4 180 0 233 296 46 84 chr1 227966057 227966214 -14698139 - MIR SINE MIR -71 137 42 2060 70 0 0 chr1 227967124 227967367 -14696986 - AluY SINE Alu -15 296 54 1980 125 60 41 chr1 227967463 227967831 -14696522 + THE1C LTR MaLR 1 375 0 328 363 57 8 chr1 227967923 227968185 -14696168 - MLT1G1-int LTR MaLR -795 576 302 348 267 0 0 chr1 227968207 227968293 -14696060 - MLT1G1-int LTR MaLR -1285 86 1 547 211 8 57 chr1 227968296 227968419 -14695934 - MLT1G1 LTR MaLR -2 593 477 582 180 126 7 chr1 227968424 227968632 -14695721 - MLT1G1 LTR MaLR -185 357 88 * 1845 215 117 48 chr1 227968626 227968970 -14695383 - MLT1F1 LTR MaLR -11 556 162 2565 62 3 0 chr1 227968970 227969277 -14695076 + AluY SINE Alu 2 309 -2 1845 215 117 48 chr1 227969277 227969452 -14694901 - MLT1F1 LTR MaLR -405 162 1 417 237 61 15 chr1 227969452 227969581 -14694772 - MLT1G1 LTR MaLR -455 135 1 206 322 0 33 chr1 227969660 227969750 -14694603 - L2 LINE L2 0 3272 3186 784 207 13 0 chr1 227969759 227969909 -14694444 - FRAM SINE Alu -11 165 14 2130 148 38 3 chr1 227970584 227970923 -14693430 - MSTA LTR MaLR -2 426 76 354 115 19 0 chr1 227970923 227970975 -14693378 - MSTA LTR MaLR -300 128 76 924 102 8 0 chr1 227970975 227971102 -14693251 - MSTA LTR MaLR -300 128 1 589 246 74 33 chr1 227971208 227971423 -14692930 + MIR SINE MIR 12 235 -27 369 337 23 12 chr1 227973398 227973570 -14690783 + MER5B DNA MER1_type 5 178 0 4012 154 22 15 chr1 227973817 227974492 -14689861 + MER54B LTR ERVL 1 680 -113 24 0 0 0 chr1 227974760 227974784 -14689569 + AT_rich Low_complexity Low_complexity 1 24 0 3061 166 22 11 chr1 227975788 227976336 -14688017 - MER89 LTR ERV1 0 559 6 221 295 74 33 chr1 227977140 227977262 -14687091 + MIR SINE MIR 79 205 -57 1706 166 21 17 chr1 227977366 227977655 -14686698 - AluJo SINE Alu -22 290 1 262 363 48 0 chr1 227979469 227979615 -14684738 + MIR SINE MIR 2 154 -108 1656 212 156 44 chr1 227979631 227980240 -14684113 - HsTC2a DNA Tc2 -34 710 34 387 0 0 0 chr1 227980240 227980283 -14684070 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2733 238 84 11 chr1 227980489 227980759 -14683594 - L1ME2 LINE L1 -1 6163 5914 2340 103 7 3 chr1 227980759 227981069 -14683284 + AluSq SINE Alu 1 311 -2 2733 238 84 11 chr1 227981069 227982130 -14682223 - L1ME2 LINE L1 -250 5914 4726 282 202 19 29 chr1 227982160 227982264 -14682089 + CT-rich Low_complexity Low_complexity 4 106 0 564 237 17 0 chr1 227982264 227982382 -14681971 - FAM SINE Alu -1 184 65 1961 160 3 0 chr1 227982392 227982686 -14681667 - AluSx SINE Alu -17 295 1 984 246 46 16 chr1 227982698 227983064 -14681289 - L1ME2 LINE L1 -1499 4647 4271 298 280 92 29 chr1 227983067 227983274 -14681079 - MIR SINE MIR -42 220 1 932 269 66 23 chr1 227985890 227986239 -14678114 - MLT1J LTR MaLR -141 370 7 2217 80 52 7 chr1 227987017 227987303 -14677050 - AluSq SINE Alu -14 299 1 2583 123 53 7 chr1 227987947 227988360 -14675993 - MSTB1 LTR MaLR 0 432 1 790 139 0 8 chr1 227988942 227989071 -14675282 - L1PA15 LINE L1 -5 6160 6033 453 36 0 0 chr1 227990175 227990230 -14674123 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 296 282 71 0 chr1 227990231 227990316 -14674037 - L2 LINE L2 -9 3263 3173 267 296 52 17 chr1 227991386 227991501 -14672852 - MIR SINE MIR -36 226 108 2304 97 0 0 chr1 227992298 227992587 -14671766 - AluSg1 SINE Alu -19 290 2 28 29 0 0 chr1 227992587 227992622 -14671731 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 227993882 227993910 -14670443 + AT_rich Low_complexity Low_complexity 1 28 0 291 316 76 12 chr1 227994118 227994289 -14670064 - MIR SINE MIR -72 190 9 264 297 59 8 chr1 227994412 227994530 -14669823 - L1ME LINE L1 -451 5670 5547 1739 149 54 4 chr1 227994677 227994953 -14669400 - AluJb SINE Alu -22 290 1 2751 78 94 10 chr1 227994974 227995387 -14668966 - LTR7 LTR ERV1 -2 448 1 2382 98 50 13 chr1 227995387 227995765 -14668588 - HERVH LTR ERV1 0 7713 7322 1383 148 19 0 chr1 227995763 227995979 -14668374 - HERVH LTR ERV1 -1894 5819 5600 * 8469 105 3 1 chr1 227995980 227997152 -14667201 - HERVH LTR ERV1 -2564 5149 3994 3631 97 0 6 chr1 227997202 227997707 -14666646 - HERVH LTR ERV1 -3720 3993 3492 917 135 20 0 chr1 227997697 227997845 -14666508 - HERVH LTR ERV1 -4423 3290 3140 * 15152 123 11 15 chr1 227997842 228000533 -14663820 - HERVH LTR ERV1 -4729 2984 1 2846 75 92 5 chr1 228000535 228000947 -14663406 - LTR7 LTR ERV1 -2 448 1 21 0 0 0 chr1 228003683 228003704 -14660649 + AT_rich Low_complexity Low_complexity 1 21 0 313 276 63 31 chr1 228004161 228004288 -14660065 - L2 LINE L2 -16 3256 3126 550 278 24 34 chr1 228004517 228004726 -14659627 + MIR SINE MIR 50 256 -6 220 274 27 14 chr1 228004742 228004815 -14659538 - L2 LINE L2 -433 2880 2807 2263 154 70 12 chr1 228004929 228005332 -14659021 - MSTB LTR MaLR 0 426 1 1962 221 68 47 chr1 228005388 228005944 -14658409 + L1MD2 LINE L1 5446 6013 -346 804 59 0 0 chr1 228005995 228006097 -14658256 - AluY SINE Alu -1 310 209 389 195 179 12 chr1 228006103 228006237 -14658116 + L1ME1 LINE L1 6021 6148 -18 183 167 136 45 chr1 228006257 228006312 -14658041 - MIR SINE MIR -52 210 147 1427 144 13 13 chr1 228006312 228006548 -14657805 + MER46A DNA MER2_type 1 236 0 1530 169 21 62 chr1 228007284 228007609 -14656744 - AluJo SINE Alu 0 312 1 612 256 11 28 chr1 228008064 228008240 -14656113 - MER69A DNA AcHobo -4 173 1 329 323 111 45 chr1 228008242 228009405 -14654948 - L2 LINE L2 -9 3263 2030 2584 132 50 66 chr1 228009528 228009972 -14654381 - MER4B LTR ERV1 -67 712 306 2215 78 3 7 chr1 228009972 228010255 -14654098 + AluY SINE Alu 30 311 0 2584 132 50 66 chr1 228010255 228010557 -14653796 - MER4B LTR ERV1 -473 306 1 219 225 0 0 chr1 228010647 228010687 -14653666 + (TGAG)n Simple_repeat Simple_repeat 1 40 0 182 319 69 28 chr1 228011432 228011576 -14652777 - L2 LINE L2 -2880 434 285 2113 184 5 15 chr1 228012329 228012720 -14651633 - MLT1B LTR MaLR -3 387 1 243 309 126 26 chr1 228012840 228013234 -14651119 + L2 LINE L2 2813 3272 0 551 191 184 0 chr1 228013721 228013857 -14650496 - MER5A DNA MER1_type -2 187 27 183 130 37 74 chr1 228014191 228014245 -14650108 + L2 LINE L2 3221 3272 0 520 210 96 42 chr1 228014330 228014421 -14649932 - MIR SINE MIR -13 249 164 2322 94 3 0 chr1 228014421 228014718 -14649635 - AluSp SINE Alu -15 298 1 520 210 96 42 chr1 228014718 228014793 -14649560 - MIR SINE MIR -98 164 74 277 147 15 15 chr1 228014832 228014900 -14649453 + (TG)n Simple_repeat Simple_repeat 2 69 0 196 301 55 0 chr1 228015133 228015206 -14649147 + L2 LINE L2 3140 3216 -56 227 186 0 23 chr1 228015942 228015985 -14648368 + GA-rich Low_complexity Low_complexity 3 44 0 380 294 27 7 chr1 228017336 228017482 -14646871 - MIR SINE MIR -86 176 28 2123 151 17 9 chr1 228018546 228018891 -14645462 - MER7A DNA MER2_type 0 346 1 385 255 92 46 chr1 228019463 228019616 -14644737 + MIR SINE MIR 46 205 -57 2283 107 7 0 chr1 228020014 228020314 -14644039 - AluSx SINE Alu -10 302 1 2990 159 21 0 chr1 228022044 228022529 -14641824 - LTR42 LTR ERVL 0 495 1 231 262 215 20 chr1 228022751 228022900 -14641453 + MIR3 SINE MIR 30 207 -1 231 246 29 29 chr1 228023587 228023656 -14640697 - MER5B DNA MER1_type -94 84 16 2283 162 6 3 chr1 228024560 228024924 -14639429 - MLT1A1 LTR MaLR 0 365 1 1208 153 40 31 chr1 228025579 228025802 -14638551 - MER46A DNA MER2_type 0 236 12 841 153 0 15 chr1 228026591 228026728 -14637625 - FLAM_C SINE Alu -6 137 3 225 0 0 0 chr1 228026751 228026776 -14637577 + (T)n Simple_repeat Simple_repeat 1 25 0 592 209 43 0 chr1 228027203 228027318 -14637035 + MER63 DNA MER1_type 1 746 -90 360 167 77 26 chr1 228027324 228027402 -14636951 + MER63 DNA MER1_type 979 1060 -2 211 280 105 28 chr1 228027436 228027579 -14636774 - MIR SINE MIR -50 212 59 199 303 197 0 chr1 228028144 228028286 -14636067 - MIR SINE MIR -32 230 61 2075 136 13 0 chr1 228028521 228028829 -14635524 - AluSx SINE Alu 0 312 1 2359 80 10 13 chr1 228029680 228029992 -14634361 + AluY SINE Alu 1 311 0 344 293 78 12 chr1 228030325 228030492 -14633861 - MIR3 SINE MIR -11 197 20 857 141 30 10 chr1 228030837 228031016 -14633337 - L1MB3 LINE L1 -101 6070 5890 548 348 11 1 chr1 228031532 228031716 -14632637 + MIR3 SINE MIR 23 207 -1 420 277 193 14 chr1 228031739 228031952 -14632401 - MIR SINE MIR -1 261 11 1608 189 59 0 chr1 228033878 228033991 -14630362 + AluJo SINE Alu 3 108 -204 387 0 0 0 chr1 228033991 228034034 -14630319 + (TA)n Simple_repeat Simple_repeat 2 44 0 1608 189 59 0 chr1 228034034 228034206 -14630147 + AluJo SINE Alu 108 305 -7 282 56 0 0 chr1 228034448 228034484 -14629869 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 386 115 0 0 chr1 228034670 228034722 -14629631 + Tigger2 DNA MER2_type 2400 2451 -267 1973 146 133 8 chr1 228034723 228035106 -14629247 - MSTB1 LTR MaLR -1 431 1 26 64 0 0 chr1 228036139 228036186 -14628167 + AT_rich Low_complexity Low_complexity 1 47 0 2043 123 3 30 chr1 228039147 228039448 -14624905 - AluSx SINE Alu -19 293 1 2209 107 3 13 chr1 228039458 228039757 -14624596 - AluSc SINE Alu -13 296 1 2563 55 0 19 chr1 228039928 228040237 -14624116 + AluY SINE Alu 1 303 -8 248 213 85 64 chr1 228040819 228040913 -14623440 + MIR3 SINE MIR 87 182 -26 2597 155 14 9 chr1 228041366 228041792 -14622561 + MSTA LTR MaLR 1 428 0 222 339 32 53 chr1 228043136 228043325 -14621028 + L3b LINE CR1 1203 1387 -196 503 315 67 64 chr1 228043386 228043904 -14620449 - L2 LINE L2 -1 3271 2751 1028 242 70 21 chr1 228043925 228044252 -14620101 - L1ME3A LINE L1 0 6170 5828 885 228 98 16 chr1 228044255 228044339 -14620014 - L1ME3A LINE L1 -374 5796 5720 1407 153 31 0 chr1 228044339 228044568 -14619785 - MER46A DNA MER2_type 0 236 1 885 228 98 16 chr1 228044568 228044738 -14619615 - L1ME3A LINE L1 -450 5720 5521 2516 126 58 22 chr1 228045268 228045681 -14618672 + MSTC LTR MaLR 1 428 0 3170 147 80 11 chr1 228045860 228046424 -14617929 - LTR26 LTR ERV1 0 603 1 1786 166 12 73 chr1 228046519 228046930 -14617423 - MLT1B LTR MaLR 0 390 5 186 356 52 7 chr1 228047183 228047318 -14617035 - MIR SINE MIR -76 186 46 189 0 0 0 chr1 228048507 228048528 -14615825 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 208 304 11 33 chr1 228048542 228048634 -14615719 - L2 LINE L2 -16 3297 3208 2255 102 0 6 chr1 228049595 228049910 -14614443 - L1PA15 LINE L1 -210 5955 5643 1234 162 5 0 chr1 228049911 228050109 -14614244 + L1PA15 LINE L1 5967 6165 0 1769 192 79 5 chr1 228051176 228051545 -14612808 - MSTD LTR MaLR 0 396 1 2148 111 0 4 chr1 228052032 228052459 -14611894 - AluSc SINE Alu 0 426 1 444 275 19 31 chr1 228053201 228053361 -14610992 + L1ME3A LINE L1 5791 5948 -222 2245 77 33 13 chr1 228053762 228054061 -14610292 + AluY SINE Alu 1 305 -6 209 306 75 60 chr1 228054874 228055008 -14609345 - MIR SINE MIR -56 152 17 208 290 0 16 chr1 228055032 228055094 -14609259 + CT-rich Low_complexity Low_complexity 2 62 0 1183 163 46 28 chr1 228055777 228056059 -14608294 + L1MB3 LINE L1 5894 6180 -3 1581 81 54 14 chr1 228056409 228056630 -14607723 + MER30 DNA MER1_type 1 230 0 1614 194 77 13 chr1 228056657 228057069 -14607284 - MER74A LTR ERVL -27 531 2 366 306 48 0 chr1 228057701 228057825 -14606528 + MIR SINE MIR 59 188 -74 181 375 97 0 chr1 228057901 228057973 -14606380 - L2 LINE L2 -78 3194 3116 183 80 0 0 chr1 228058068 228058093 -14606260 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1781 182 0 7 chr1 228058179 228058481 -14605872 + AluSx SINE Alu 1 300 -12 386 259 57 86 chr1 228058758 228059084 -14605269 - MLT1I LTR MaLR 0 450 92 414 273 175 58 chr1 228059703 228060045 -14604308 - L1M4 LINE L1 -920 5226 4815 306 0 0 0 chr1 228060045 228060079 -14604274 + (TG)n Simple_repeat Simple_repeat 1 34 0 414 273 175 58 chr1 228060079 228060198 -14604155 - L1M4 LINE L1 -1331 4815 4711 240 86 0 0 chr1 228060213 228060248 -14604105 + (CA)n Simple_repeat Simple_repeat 1 35 0 1051 217 28 16 chr1 228060287 228060605 -14603748 - L1MEc LINE L1 -4111 2285 1964 183 156 0 0 chr1 228060713 228060745 -14603608 + (TA)n Simple_repeat Simple_repeat 2 33 0 339 200 22 22 chr1 228060755 228060845 -14603508 - L1MEc LINE L1 -4410 1986 1897 323 280 38 19 chr1 228060917 228061074 -14603279 - L1M4 LINE L1 -2379 3767 3608 180 335 38 89 chr1 228061086 228061244 -14603109 + L2 LINE L2 2591 2740 -574 202 204 93 19 chr1 228062052 228062106 -14602247 + L2 LINE L2 3199 3256 -16 218 356 27 13 chr1 228062367 228062516 -14601837 - L2 LINE L2 -173 3099 2949 2058 135 6 3 chr1 228063949 228064260 -14600093 + AluSx SINE Alu 1 312 0 925 191 38 6 chr1 228064510 228064693 -14599660 - MER5A DNA MER1_type 0 189 1 25 0 0 0 chr1 228065328 228065353 -14599000 + AT_rich Low_complexity Low_complexity 1 25 0 219 247 50 15 chr1 228067230 228067318 -14597035 + MER91A DNA MER1_type 1 95 -95 23 33 0 0 chr1 228067331 228067361 -14596992 + AT_rich Low_complexity Low_complexity 1 30 0 296 273 9 100 chr1 228067393 228067503 -14596850 + MER91B DNA MER1_type 91 190 0 24 0 0 0 chr1 228067626 228067650 -14596703 + AT_rich Low_complexity Low_complexity 1 24 0 1926 128 0 0 chr1 228067657 228067915 -14596438 + AluSx SINE Alu 40 297 -15 417 214 174 0 chr1 228067924 228068022 -14596331 - MLT1C LTR MaLR -4 386 272 630 199 6 99 chr1 228068072 228068233 -14596120 + MER46A DNA MER2_type 1 146 -90 278 130 0 19 chr1 228068301 228068355 -14595998 + (TCC)n Simple_repeat Simple_repeat 3 55 0 956 194 12 0 chr1 228068368 228068533 -14595820 - FRAM SINE Alu -17 159 1 584 225 14 28 chr1 228068533 228068675 -14595678 - MLT1C LTR MaLR -291 176 37 546 282 93 41 chr1 228068724 228069321 -14595032 - L2 LINE L2 -121 3192 2571 210 259 56 0 chr1 228069586 228069640 -14594713 + polypyrimidine Low_complexity Low_complexity 5 61 0 2599 236 59 17 chr1 228069741 228070636 -14593717 + L1MC4 LINE L1 6476 7694 -348 1594 168 30 50 chr1 228070636 228070939 -14593414 + AluJb SINE Alu 1 297 -15 2599 236 59 17 chr1 228070939 228071302 -14593051 + L1MC4 LINE L1 7694 8040 -2 2311 109 7 0 chr1 228071319 228071621 -14592732 - AluSp SINE Alu -9 304 1 705 175 22 9 chr1 228072237 228072465 -14591888 + CT-rich Low_complexity Low_complexity 1 231 0 37314 62 2 4 chr1 228072466 228078035 -14586318 - L1PA5 LINE L1 0 6154 596 756 126 14 14 chr1 228078042 228078185 -14586168 + CT-rich Low_complexity Low_complexity 1 143 0 1546 169 15 15 chr1 228078201 228078474 -14585879 - AluJb SINE Alu -2 310 38 501 245 97 7 chr1 228078787 228078942 -14585411 + MER96 DNA MER1_type? 7 175 0 644 288 57 54 chr1 228079238 228079645 -14584708 - MLT1J LTR MaLR 0 511 104 26 0 0 0 chr1 228079653 228079679 -14584674 + AT_rich Low_complexity Low_complexity 1 26 0 244 290 57 40 chr1 228079836 228079960 -14584393 - MLT1K LTR MaLR -253 335 210 709 264 173 50 chr1 228080416 228080801 -14583552 - MLT1J LTR MaLR -7 504 55 2274 101 23 3 chr1 228080801 228081107 -14583246 + AluSq SINE Alu 1 312 -1 709 264 173 50 chr1 228081107 228081165 -14583188 - MLT1J LTR MaLR -456 55 6 2603 11 0 3 chr1 228081694 228081977 -14582376 + AluYa5 SINE Alu 23 304 -7 207 313 62 0 chr1 228083229 228083293 -14581060 - MIR SINE MIR -112 150 83 1061 157 16 26 chr1 228085261 228085452 -14578901 - MER20 DNA MER1_type 0 219 31 879 154 11 48 chr1 228085457 228085528 -14578825 + MER53 DNA DNA 1 73 -116 2877 157 2 24 chr1 228085528 228086037 -14578316 - L1MB3 LINE L1 0 6183 5686 879 154 11 48 chr1 228086037 228086153 -14578200 + MER53 DNA DNA 73 181 -8 2327 78 3 32 chr1 228086205 228086513 -14577840 - AluSg SINE Alu -11 299 1 24 85 0 0 chr1 228086797 228086856 -14577497 + AT_rich Low_complexity Low_complexity 1 59 0 1625 160 3 38 chr1 228086968 228087287 -14577066 - L1MA9 LINE L1 -5 6307 6000 293 273 176 0 chr1 228087373 228087531 -14576822 + MIR SINE MIR 33 208 -54 602 306 28 24 chr1 228087619 228087874 -14576479 - MIR SINE MIR 0 262 7 2203 102 0 43 chr1 228088295 228088618 -14575735 + AluSc SINE Alu 1 309 0 2527 64 0 0 chr1 228089958 228090255 -14574098 - AluY SINE Alu -14 297 1 21 0 0 0 chr1 228090255 228090276 -14574077 + AT_rich Low_complexity Low_complexity 1 21 0 239 294 94 47 chr1 228090460 228090630 -14573723 + MIR SINE MIR 2 179 -83 186 341 56 34 chr1 228090635 228090814 -14573539 + L3 LINE CR1 1371 1553 -24 528 220 42 42 chr1 228090851 228091019 -14573334 + MLT1C LTR MaLR 1 168 -299 224 337 21 11 chr1 228093159 228093254 -14571099 - L3b LINE CR1 -88 1495 1400 6003 97 0 2 chr1 228093573 228094427 -14569926 - L1P LINE L1 -2870 3276 2425 219 317 48 0 chr1 228095326 228095430 -14568923 - MIR3 SINE MIR -24 184 76 442 285 39 62 chr1 228095491 228095747 -14568606 - MIR SINE MIR -8 254 5 189 107 0 0 chr1 228096651 228096679 -14567674 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1661 169 17 27 chr1 228096789 228097085 -14567268 - AluJo SINE Alu -9 303 11 368 290 156 5 chr1 228097558 228097744 -14566609 - MIR SINE MIR -41 221 8 392 281 58 35 chr1 228098250 228098421 -14565932 - MIR SINE MIR -65 197 23 257 307 111 51 chr1 228103046 228103249 -14561104 + L2 LINE L2 1962 2152 -1162 2211 204 55 44 chr1 228103249 228103868 -14560485 + MLT1E2 LTR MaLR 1 626 0 257 307 111 51 chr1 228103868 228104035 -14560318 + L2 LINE L2 2152 2354 -960 276 288 152 38 chr1 228104107 228104291 -14560062 + L2 LINE L2 2999 3203 -110 229 266 38 13 chr1 228104321 228104400 -14559953 - MIR SINE MIR -2 260 180 * 394 241 11 0 chr1 228104398 228104485 -14559868 + L2 LINE L2 3226 3313 0 2298 110 0 0 chr1 228104893 228105184 -14559169 - AluSx SINE Alu -19 293 3 188 261 0 0 chr1 228105436 228105482 -14558871 + L2 LINE L2 3227 3272 0 2563 61 0 0 chr1 228106620 228106914 -14557439 - AluSc SINE Alu -15 294 1 21 36 0 0 chr1 228106941 228106969 -14557384 + AT_rich Low_complexity Low_complexity 1 28 0 2133 129 6 3 chr1 228107525 228107836 -14556517 + AluSx SINE Alu 1 312 0 449 279 22 7 chr1 228108181 228108317 -14556036 - Zaphod DNA AcHobo 0 4031 3894 2704 171 73 11 chr1 228108317 228108837 -14555516 - MER74A LTR ERVL 0 558 7 2052 157 0 0 chr1 228108868 228109167 -14555186 - AluSx SINE Alu -13 299 1 247 274 32 0 chr1 228109189 228109251 -14555102 - MER115 DNA AcHobo -152 541 478 889 259 186 11 chr1 228109410 228109780 -14554573 + LTR16A LTR ERVL 16 450 0 560 333 86 9 chr1 228109798 228109916 -14554437 - MER115 DNA AcHobo -347 346 238 22072 90 13 8 chr1 228109916 228113759 -14550594 + L1PA7 LINE L1 2318 6154 0 560 333 86 9 chr1 228113759 228113955 -14550398 - MER115 DNA AcHobo -455 238 8 2505 69 0 3 chr1 228114005 228114311 -14550042 - AluSg SINE Alu -5 305 1 202 253 240 0 chr1 228115090 228115165 -14549188 + MIR SINE MIR 105 197 -65 396 0 0 0 chr1 228115348 228115392 -14548961 + (TG)n Simple_repeat Simple_repeat 1 44 0 232 349 0 0 chr1 228116858 228116924 -14547429 + L2 LINE L2 3232 3297 -16 1819 152 0 69 chr1 228116927 228117262 -14547091 + AluJo SINE Alu 1 312 0 384 59 0 0 chr1 228117822 228117873 -14546480 + (TA)n Simple_repeat Simple_repeat 2 52 0 278 263 140 23 chr1 228118162 228118333 -14546020 + MIR SINE MIR 67 257 -5 1319 258 80 17 chr1 228120342 228120630 -14543723 + L2 LINE L2 2156 2479 -835 2392 89 0 3 chr1 228120630 228120933 -14543420 - AluSq SINE Alu -11 302 1 1319 258 80 17 chr1 228120933 228121059 -14543294 + L2 LINE L2 2479 2596 -718 2186 181 40 31 chr1 228121121 228121575 -14542778 + MER39 LTR ERV1 250 707 0 649 291 168 26 chr1 228121578 228121747 -14542606 + L2 LINE L2 2593 2737 -576 1143 271 159 21 chr1 228121747 228122268 -14542085 - MLT1G1 LTR MaLR -2 593 1 649 291 168 26 chr1 228122268 228122690 -14541663 + L2 LINE L2 2737 3277 -36 230 262 0 0 chr1 228123111 228123172 -14541181 + (TAA)n Simple_repeat Simple_repeat 2 62 0 250 222 62 37 chr1 228123756 228123837 -14540516 - MER117 DNA MER1_type -80 117 35 271 271 108 61 chr1 228125155 228125371 -14538982 + MIR SINE MIR 25 246 -16 1776 150 11 0 chr1 228125389 228125695 -14538658 - AluSx SINE Alu 0 309 1 3365 186 40 67 chr1 228125748 228126515 -14537838 - MER21A LTR ERV1 -19 912 166 6295 116 3 0 chr1 228126516 228127607 -14536746 - L1PA16 LINE L1 -1 6165 5070 688 196 0 0 chr1 228127607 228127740 -14536613 + L1 LINE L1 4656 4788 -1358 494 161 23 0 chr1 228127741 228127828 -14536525 - MER39 LTR ERV1 -396 311 223 371 140 0 0 chr1 228127830 228127887 -14536466 - MER21A LTR ERV1 -861 70 14 497 139 13 0 chr1 228128465 228128544 -14535809 + MER116 DNA Mariner 1 80 0 195 266 130 34 chr1 228128589 228128766 -14535587 + L2 LINE L2 2882 3075 -197 1966 192 80 35 chr1 228128816 228129279 -14535074 - LTR2B LTR ERV1 0 490 7 319 247 43 32 chr1 228129284 228129377 -14534976 + L2 LINE L2 3177 3270 -2 226 304 0 0 chr1 228132481 228132537 -14531816 + Charlie7 DNA MER1_type 35 90 -2522 1169 22 0 0 chr1 228133629 228133766 -14530587 + AluYa5/8 SINE Alu 174 310 0 243 323 81 8 chr1 228133950 228134074 -14530279 + MIR SINE MIR 23 155 -107 206 42 0 0 chr1 228134332 228134356 -14529997 + (T)n Simple_repeat Simple_repeat 1 24 0 6483 42 0 0 chr1 228134744 228135504 -14528849 - L1PA5 LINE L1 0 6154 5395 2407 87 0 3 chr1 228138190 228138490 -14525863 - AluSg SINE Alu -11 299 1 2214 91 3 13 chr1 228139963 228140296 -14524057 + AluSc SINE Alu 1 309 0 4413 154 29 33 chr1 228140303 228141129 -14523224 + L1PB4 LINE L1 5333 6155 -1 366 320 40 17 chr1 228142014 228142189 -14522164 - MIR SINE MIR -3 259 81 2421 246 74 91 chr1 228142228 228142354 -14521999 - L1MC5 LINE L1 -51 7910 7783 2669 163 43 18 chr1 228142354 228142844 -14521509 - MLT1D LTR MaLR -2 503 2 2421 246 74 91 chr1 228142844 228144016 -14520337 - L1MC5 LINE L1 -178 7783 6664 3947 119 13 4 chr1 228144016 228144538 -14519815 + MER1A DNA MER1_type 1 527 0 2421 246 74 91 chr1 228144538 228144747 -14519606 - L1MC5 LINE L1 -1297 6664 6453 296 223 38 25 chr1 228144747 228144904 -14519449 + (TA)n Simple_repeat Simple_repeat 2 160 0 389 271 151 16 chr1 228145146 228145397 -14518956 - L1MC4a LINE L1 -1641 6167 5883 233 282 35 0 chr1 228145764 228145849 -14518504 - L1MC4a LINE L1 -361 5801 5714 1708 187 11 0 chr1 228146104 228146388 -14517965 - AluJo SINE Alu -25 287 1 340 214 10 10 chr1 228147458 228147561 -14516792 + CT-rich Low_complexity Low_complexity 2 104 0 297 320 151 53 chr1 228147597 228147994 -14516359 - L2 LINE L2 -48 3265 2830 1355 249 38 88 chr1 228148014 228148561 -14515792 - LTR41 LTR ERVL -17 756 237 762 194 42 0 chr1 228148804 228148948 -14515405 - LTR41 LTR ERVL -611 162 13 669 225 45 34 chr1 228149033 228149211 -14515142 - MIR SINE MIR -51 211 32 273 312 21 53 chr1 228149437 228149626 -14514727 + L3b LINE CR1 1129 1311 -272 202 363 121 51 chr1 228149695 228150026 -14514327 - L2 LINE L2 -22 3250 2897 489 286 103 51 chr1 228150032 228150173 -14514180 + MIR SINE MIR 7 166 -96 2315 98 0 46 chr1 228150173 228150499 -14513854 + AluSq SINE Alu 1 311 -2 489 286 103 51 chr1 228150499 228150591 -14513762 + MIR SINE MIR 166 252 -10 344 311 62 24 chr1 228151109 228151296 -14513057 + MIR SINE MIR 40 233 -29 2137 123 10 0 chr1 228153041 228153333 -14511020 + AluSx SINE Alu 1 295 -17 386 257 186 7 chr1 228153353 228153493 -14510860 + MER5A DNA MER1_type 9 173 -16 2094 193 17 8 chr1 228153526 228153888 -14510465 + MLT1A1 LTR MaLR 1 365 0 428 313 106 10 chr1 228154864 228155072 -14509281 - MIR SINE MIR 0 262 35 495 273 68 11 chr1 228157160 228157336 -14507017 - L1MC4a LINE L1 -2063 5745 5560 275 291 17 51 chr1 228158729 228158846 -14505507 - L2 LINE L2 -5 3267 3155 862 289 19 50 chr1 228159341 228159688 -14504665 - MLT1H1 LTR MaLR -221 334 1 376 229 0 0 chr1 228159703 228159773 -14504580 + MIR SINE MIR 158 227 -35 183 229 0 0 chr1 228159788 228159849 -14504504 + (ATGGTG)n Simple_repeat Simple_repeat 6 66 0 8240 25 0 0 chr1 228160477 228161610 -14502743 - L1PA3 LINE L1 -3 6152 5020 528 308 95 72 chr1 228163100 228163632 -14500721 + L1MDb LINE L1 1000 1510 -4862 233 284 155 9 chr1 228163635 228163751 -14500602 + HAL1b LINE L1 375 507 -841 22 0 0 0 chr1 228163964 228163986 -14500367 + AT_rich Low_complexity Low_complexity 1 22 0 4775 222 102 28 chr1 228164291 228164948 -14499405 + L1ME LINE L1 6 613 -5793 329 0 24 0 chr1 228164948 228164989 -14499364 + (CAA)n Simple_repeat Simple_repeat 2 43 0 4775 222 102 28 chr1 228164989 228166211 -14498142 + L1ME LINE L1 613 2106 -4300 1954 146 7 0 chr1 228166211 228166512 -14497841 - AluSx SINE Alu 0 304 2 4775 222 102 28 chr1 228166512 228166709 -14497644 + L1ME LINE L1 2106 2287 -4119 4770 213 57 7 chr1 228166679 228167730 -14496623 + L1MD2 LINE L1 5054 6198 -421 * 396 0 0 0 chr1 228167730 228167774 -14496579 + (CA)n Simple_repeat Simple_repeat 1 44 0 4770 213 57 7 chr1 228167774 228168219 -14496134 + L1MD2 LINE L1 6198 6619 0 331 330 69 17 chr1 228168266 228168732 -14495621 + L1ME LINE L1 2391 2880 -3526 308 309 26 40 chr1 228168842 228168994 -14495359 + L1ME LINE L1 3032 3181 -3225 249 250 98 60 chr1 228169147 228169716 -14494637 + L1ME LINE L1 3182 3772 -2634 336 240 144 0 chr1 228169745 228169870 -14494483 + L1ME LINE L1 5610 5752 -674 889 171 4 12 chr1 228169961 228170186 -14494167 + CT-rich Low_complexity Low_complexity 1 223 0 626 275 76 27 chr1 228170375 228170742 -14493611 - L1MEc LINE L1 -4752 1644 1260 321 277 20 0 chr1 228170863 228170964 -14493389 + L1MEd LINE L1 934 1036 -5083 276 318 19 32 chr1 228170997 228171151 -14493202 + Charlie8 DNA MER1_type 119 270 -2147 10995 95 10 29 chr1 228171291 228172867 -14491486 + THE1C-int LTR MaLR 35 1580 0 2368 128 24 27 chr1 228172867 228173243 -14491110 + THE1C LTR MaLR 1 375 0 201 265 0 0 chr1 228173250 228173299 -14491054 - L2 LINE L2 -61 3211 3163 208 340 62 36 chr1 228173393 228173587 -14490766 - L2 LINE L2 -214 3058 2860 255 150 50 57 chr1 228174418 228174558 -14489795 + (TA)n Simple_repeat Simple_repeat 1 139 0 225 333 14 0 chr1 228174744 228174813 -14489540 + CT-rich Low_complexity Low_complexity 4 73 0 1517 235 57 47 chr1 228175622 228176142 -14488211 - MER39 LTR ERV1 0 707 1 203 158 0 26 chr1 228176142 228176180 -14488173 + CT-rich Low_complexity Low_complexity 1 37 0 656 232 62 76 chr1 228176631 228176855 -14487498 + L1ME1 LINE L1 5928 6148 -18 321 171 162 117 chr1 228177231 228177342 -14487011 - LTR24B LTR ERV1 -499 77 1 212 268 122 61 chr1 228177896 228177978 -14486375 - MIR SINE MIR -58 150 64 2288 168 88 14 chr1 228178529 228179148 -14485205 - MER39 LTR ERV1 -2 705 1 23 54 0 0 chr1 228182464 228182501 -14481852 + AT_rich Low_complexity Low_complexity 1 37 0 185 250 21 0 chr1 228184123 228184171 -14480182 - L2 LINE L2 0 3313 3265 2325 78 7 0 chr1 228185147 228185457 -14478896 + AluSp SINE Alu 1 312 0 248 281 31 73 chr1 228185462 228185558 -14478795 + MIR3 SINE MIR 111 202 -6 369 0 0 0 chr1 228186421 228186462 -14477891 + (CA)n Simple_repeat Simple_repeat 2 42 0 981 289 126 12 chr1 228186785 228187248 -14477105 - MLT1G3 LTR MaLR 0 595 1 2362 88 3 0 chr1 228187396 228187693 -14476660 - AluSc SINE Alu -11 298 1 264 238 75 0 chr1 228188223 228188303 -14476050 - L1ME4a LINE L1 -57 6064 5979 328 228 181 29 chr1 228188306 228188477 -14475876 - L1ME4a LINE L1 -260 5861 5665 340 280 10 0 chr1 228188554 228188654 -14475699 - L1ME4a LINE L1 -458 5663 5563 230 154 185 0 chr1 228189102 228189167 -14475186 - L1MC4 LINE L1 -1353 6689 6613 2216 103 3 0 chr1 228189685 228189977 -14474376 - AluSg SINE Alu -17 293 1 287 192 81 91 chr1 228190586 228190685 -14473668 - L2 LINE L2 -5 3267 3170 2390 38 0 0 chr1 228190685 228190952 -14473401 - AluY SINE Alu -13 298 32 2083 104 50 7 chr1 228191834 228192133 -14472220 - AluSq SINE Alu -1 312 1 333 0 0 0 chr1 228192879 228192916 -14471437 + (TG)n Simple_repeat Simple_repeat 2 38 0 335 254 79 18 chr1 228193612 228193726 -14470627 + MIR SINE MIR 72 192 -70 235 296 99 56 chr1 228193933 228194075 -14470278 - MIR SINE MIR -51 211 64 7602 44 2 0 chr1 228195717 228197025 -14467328 - L1P2 LINE L1 -394 5760 4451 4698 31 2 0 chr1 228197024 228197567 -14466786 + L1P2 LINE L1 3887 4430 -1716 * 278 258 21 11 chr1 228197567 228197660 -14466693 - MIR SINE MIR -49 213 120 223 299 150 39 chr1 228198261 228198388 -14465965 - MIR3 SINE MIR -54 154 14 277 290 6 49 chr1 228199776 228199938 -14464415 + (CAGTG)n Simple_repeat Simple_repeat 2 156 0 359 199 16 99 chr1 228199965 228200236 -14464117 + (CAGTA)n Simple_repeat Simple_repeat 1 248 0 499 294 20 0 chr1 228200553 228200706 -14463647 - MER103 DNA DNA -7 159 4 2076 117 0 17 chr1 228202122 228202420 -14461933 - AluSx SINE Alu -19 293 1 308 297 128 31 chr1 228202543 228202738 -14461615 - MIR SINE MIR -34 228 15 546 275 133 27 chr1 228203475 228203918 -14460435 + L1MC/D LINE L1 4048 4537 -1609 562 261 73 50 chr1 228204000 228204218 -14460135 + L1MC/D LINE L1 5599 5821 -1987 210 208 62 0 chr1 228204491 228204539 -14459814 - L2 LINE L2 -8 3305 3255 2424 119 13 46 chr1 228204622 228205010 -14459343 + THE1C LTR MaLR 1 375 0 206 403 22 7 chr1 228205547 228205686 -14458667 - MIR SINE MIR -118 144 4 486 293 87 8 chr1 228205881 228206134 -14458219 - L1ME4a LINE L1 -225 5896 5624 483 192 104 32 chr1 228208394 228208519 -14455834 + L1MEd LINE L1 438 571 -5548 221 283 165 37 chr1 228209294 228209566 -14454787 + L2 LINE L2 1851 2157 -1157 401 333 162 42 chr1 228209732 228209789 -14454564 + L2 LINE L2 2245 2294 -1020 3826 184 84 24 chr1 228209789 228209948 -14454405 - LTR39 LTR ERV1 0 783 635 219 36 0 0 chr1 228209948 228209976 -14454377 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2202 82 7 7 chr1 228209976 228210256 -14454097 - AluSq SINE Alu -33 280 1 3826 184 84 24 chr1 228210256 228210834 -14453519 - LTR39 LTR ERV1 -147 636 1 401 333 162 42 chr1 228210834 228211233 -14453120 + L2 LINE L2 2294 2756 -558 2192 116 0 13 chr1 228211324 228211635 -14452718 - AluSc SINE Alu -2 307 1 997 296 78 59 chr1 228211773 228212016 -14452337 - L2 LINE L2 -825 2489 2252 1448 191 0 89 chr1 228212016 228212340 -14452013 + AluJo SINE Alu 1 295 -17 997 296 78 59 chr1 228212340 228212722 -14451631 - L2 LINE L2 -1062 2252 1852 726 210 131 6 chr1 228212732 228212908 -14451445 + MER63A DNA MER1_type 8 205 -5 253 301 75 0 chr1 228213014 228213107 -14451246 - MIR SINE MIR -46 216 117 266 104 0 21 chr1 228213755 228213803 -14450550 + (GGA)n Simple_repeat Simple_repeat 1 47 0 31 0 0 0 chr1 228213873 228213904 -14450449 + AT_rich Low_complexity Low_complexity 1 31 0 297 328 24 0 chr1 228213989 228214114 -14450239 + MARNA DNA Mariner 161 288 -298 235 283 17 0 chr1 228214139 228214199 -14450154 - MIR SINE MIR -37 225 165 226 270 0 16 chr1 228214224 228214287 -14450066 - LTR33A LTR ERVL -16 507 446 234 253 63 13 chr1 228214579 228214658 -14449695 - LTR33A LTR ERVL -400 123 41 410 292 79 22 chr1 228214830 228215008 -14449345 + MARNA DNA Mariner 296 483 -103 1910 148 6 31 chr1 228215208 228215337 -14449016 + AluSx SINE Alu 1 132 -180 207 0 0 0 chr1 228215337 228215360 -14448993 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1910 148 6 31 chr1 228215360 228215547 -14448806 + AluSx SINE Alu 132 309 -3 183 449 9 0 chr1 228215913 228216020 -14448333 + L3 LINE CR1 31 138 -1439 800 257 61 63 chr1 228216171 228216533 -14447820 + L1M4 LINE L1 3778 4138 -2008 361 312 22 26 chr1 228216538 228216769 -14447584 + L1M4 LINE L1 4307 4536 -1610 254 308 44 19 chr1 228217813 228217972 -14446381 + L1ME4a LINE L1 5957 6119 -2 185 233 0 23 chr1 228218160 228218203 -14446150 - L2 LINE L2 -5 3308 3267 326 272 66 52 chr1 228218500 228218551 -14445802 + L2 LINE L2 3171 3220 -93 2155 71 50 3 chr1 228218551 228218833 -14445520 - AluSc SINE Alu -14 295 1 326 272 66 52 chr1 228218833 228218917 -14445436 + L2 LINE L2 3220 3308 -5 456 299 98 49 chr1 228220042 228220286 -14444067 - MIR SINE MIR -5 257 2 941 251 94 4 chr1 228220533 228220788 -14443565 - LTR16C LTR ERVL -10 481 204 477 279 25 13 chr1 228221062 228221220 -14443133 - MER117 DNA MER1_type -36 161 2 190 292 0 0 chr1 228221271 228221319 -14443034 + MIR3 SINE MIR 158 205 -3 * 1161 301 77 7 chr1 228221317 228221735 -14442618 - L3 LINE CR1 -565 1012 566 2051 159 32 53 chr1 228223170 228223605 -14440748 + MSTB LTR MaLR 1 426 0 239 158 26 118 chr1 228223971 228224047 -14440306 - MIR SINE MIR -68 194 126 23 33 0 0 chr1 228224702 228224732 -14439621 + AT_rich Low_complexity Low_complexity 1 30 0 1715 184 7 7 chr1 228224739 228225033 -14439320 - AluJo SINE Alu -18 294 1 256 198 74 12 chr1 228225087 228225168 -14439185 + MER88 LTR ERVL 79 164 -300 * 1077 233 86 41 chr1 228225099 228225562 -14438791 - MER74B LTR ERVL -74 548 65 1687 113 4 0 chr1 228225815 228226044 -14438309 - AluSg SINE Alu -20 290 61 257 260 26 0 chr1 228226201 228226278 -14438075 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 525 257 162 44 chr1 228226602 228226991 -14437362 + Tigger8 DNA MER2_type 132 566 -100 1546 259 48 57 chr1 228227635 228228674 -14435679 + L1ME3 LINE L1 3986 5015 -1131 300 260 95 45 chr1 228228690 228228760 -14435593 + L1ME3 LINE L1 5133 5198 -1020 1967 153 10 0 chr1 228228760 228229060 -14435293 + AluSx SINE Alu 1 303 -9 300 260 95 45 chr1 228229060 228229286 -14435067 + L1ME3 LINE L1 5198 5444 -774 324 281 50 0 chr1 228229415 228229536 -14434817 + L1ME3 LINE L1 5614 5740 -430 620 237 31 23 chr1 228229541 228229800 -14434553 + L1ME3 LINE L1 5797 6160 -2 23 33 0 0 chr1 228230291 228230321 -14434032 + AT_rich Low_complexity Low_complexity 1 30 0 259 364 0 0 chr1 228230446 228230523 -14433830 + MIR SINE MIR 28 104 -104 34 0 0 0 chr1 228230603 228230637 -14433716 + AT_rich Low_complexity Low_complexity 1 34 0 343 167 157 10 chr1 228230768 228230870 -14433483 - L1ME2 LINE L1 -9 6155 6039 11378 165 31 35 chr1 228230888 228231732 -14432621 - L1PB2 LINE L1 -2 6149 5303 1961 138 13 24 chr1 228231732 228232030 -14432323 - AluSx SINE Alu -16 296 2 11378 165 31 35 chr1 228232030 228233829 -14430524 - L1PB2 LINE L1 -848 5303 3498 1696 48 14 0 chr1 228233829 228234036 -14430317 - AluY SINE Alu -16 295 86 11378 165 31 35 chr1 228234036 228234209 -14430144 - L1PB2 LINE L1 -2653 3498 3326 2268 100 0 7 chr1 228234209 228234518 -14429835 - AluSp SINE Alu -6 307 1 11378 165 31 35 chr1 228234518 228235379 -14428974 - L1PB2 LINE L1 -2825 3326 2457 1425 225 100 29 chr1 228235378 228235969 -14428384 - L1MEc LINE L1 -2875 3340 2708 * 496 318 74 14 chr1 228235995 228236212 -14428141 - L1MDa LINE L1 -5825 715 486 1156 245 19 7 chr1 228236216 228236526 -14427827 - L1MDa LINE L1 -6160 380 67 1069 307 53 60 chr1 228236613 228238152 -14426201 - L1MEc LINE L1 -4759 1637 111 411 303 79 58 chr1 228238211 228238294 -14426059 + L1ME4a LINE L1 5554 5634 -487 1659 165 3 41 chr1 228238294 228238609 -14425744 - AluJo SINE Alu -9 303 1 411 303 79 58 chr1 228238609 228238904 -14425449 + L1ME4a LINE L1 5634 5940 -181 1434 114 10 10 chr1 228239021 228239223 -14425130 + AluSx SINE Alu 4 205 -107 646 111 0 11 chr1 228239332 228239422 -14424931 - AluSq/x SINE Alu -189 124 36 26406 51 5 2 chr1 228240493 228244806 -14419547 + L1PA5 LINE L1 1825 6150 -4 281 289 20 40 chr1 228245685 228245834 -14418519 + Charlie7 DNA MER1_type 34 179 -2433 2021 179 52 19 chr1 228245989 228246480 -14417873 - MER67A LTR ERV1 0 661 1 607 228 110 67 chr1 228246527 228246873 -14417480 + Charlie7 DNA MER1_type 1501 1861 -751 235 254 0 55 chr1 228247362 228247472 -14416881 + Charlie7 DNA MER1_type 2509 2612 0 2495 77 3 0 chr1 228247874 228248184 -14416169 + AluSx SINE Alu 1 311 -1 474 324 15 7 chr1 228249466 228249602 -14414751 - MIR SINE MIR -122 140 4 704 180 11 11 chr1 228249974 228250152 -14414201 + GA-rich Low_complexity Low_complexity 3 180 0 238 303 20 99 chr1 228250965 228251072 -14413281 + L2 LINE L2 2637 2730 -584 1314 179 29 39 chr1 228251072 228251380 -14412973 + L1MC1 LINE L1 6028 6332 -1 238 303 20 99 chr1 228251380 228251424 -14412929 + L2 LINE L2 2730 2776 -538 580 299 122 50 chr1 228251457 228251778 -14412575 + L2 LINE L2 2928 3271 -1 198 378 126 25 chr1 228251855 228251974 -14412379 - MIR SINE MIR -62 146 16 27 0 0 0 chr1 228253109 228253136 -14411217 + AT_rich Low_complexity Low_complexity 1 27 0 2178 122 0 10 chr1 228253154 228253466 -14410887 - AluSx SINE Alu -3 309 1 2686 224 53 26 chr1 228253795 228254612 -14409741 - L1MC4a LINE L1 -7 7801 6963 1071 207 147 15 chr1 228254616 228254950 -14409403 + L1MC4a LINE L1 6620 6997 -811 25 0 0 0 chr1 228254998 228255023 -14409330 + AT_rich Low_complexity Low_complexity 1 25 0 418 335 82 18 chr1 228255924 228256094 -14408259 + MIR SINE MIR 6 186 -76 571 325 140 27 chr1 228256177 228256469 -14407884 - ERVL LTR ERVL -821 4833 4575 2577 161 47 48 chr1 228256469 228257028 -14407325 + MER74A LTR ERVL 1 558 0 571 325 140 27 chr1 228257028 228257293 -14407060 - ERVL LTR ERVL -1079 4575 4230 417 271 93 7 chr1 228257336 228257476 -14406877 - ERVL LTR ERVL -1564 4200 4049 988 206 33 9 chr1 228257517 228257731 -14406622 - MER7C DNA MER2_type -381 221 3 6843 67 11 1 chr1 228257956 228259217 -14405136 + L1PA7 LINE L1 4885 6154 0 609 210 17 17 chr1 228260080 228260199 -14404154 - FRAM SINE Alu -57 119 1 188 292 0 0 chr1 228260501 228260549 -14403804 + L3b LINE CR1 1528 1575 -8 6134 105 12 1 chr1 228260616 228261741 -14402612 + L1PA15 LINE L1 5019 6162 -3 207 272 204 10 chr1 228262445 228262548 -14401805 - L2 LINE L2 -1 3271 3149 1844 137 81 29 chr1 228262601 228262945 -14401408 + THE1B LTR MaLR 1 362 -2 2519 65 0 0 chr1 228263700 228264007 -14400346 - AluY SINE Alu -4 307 1 839 124 15 0 chr1 228264459 228264596 -14399757 - L1MB3 LINE L1 -4 6179 6041 2179 144 76 0 chr1 228264605 228264987 -14399366 - MSTB LTR MaLR -13 413 3 3378 150 21 29 chr1 228265338 228265591 -14398762 + L1MB3 LINE L1 5555 5809 -374 2768 69 36 3 chr1 228265591 228265954 -14398399 - THE1C LTR MaLR 0 375 1 3378 150 21 29 chr1 228265954 228266327 -14398026 + L1MB3 LINE L1 5809 6176 -7 355 258 72 10 chr1 228266432 228266529 -14397824 + MIR SINE MIR 159 261 -1 358 316 36 30 chr1 228266644 228266812 -14397541 - L1ME4a LINE L1 -14 6107 5939 347 176 108 0 chr1 228266849 228266923 -14397430 - L2 LINE L2 -2 3311 3230 226 171 24 0 chr1 228266896 228266937 -14397416 - L2 LINE L2 -349 2965 2924 * 370 287 11 0 chr1 228267001 228267147 -14397206 - L1ME4a LINE L1 -304 5817 5670 263 264 111 0 chr1 228267154 228267226 -14397127 + L2 LINE L2 3193 3272 0 755 245 125 5 chr1 228267311 228267503 -14396850 - MIR SINE MIR -35 227 13 1325 188 105 30 chr1 228267544 228267905 -14396448 + MLT1B LTR MaLR 1 388 -2 3484 117 28 4 chr1 228267980 228268157 -14396196 + L1PB3 LINE L1 5599 5770 -384 270 0 0 0 chr1 228268157 228268187 -14396166 + (TG)n Simple_repeat Simple_repeat 1 30 0 228 35 0 0 chr1 228268188 228268217 -14396136 + (TA)n Simple_repeat Simple_repeat 2 30 0 3484 117 28 4 chr1 228268217 228268578 -14395775 + L1PB3 LINE L1 5769 6152 -2 308 293 129 18 chr1 228268617 228268906 -14395447 - MLT1J1 LTR MaLR -75 371 52 292 191 0 136 chr1 228269114 228269224 -14395129 - MLT1J1-int LTR MaLR -202 1169 1075 2071 192 83 22 chr1 228269439 228269837 -14394516 - MER74A LTR ERVL -30 528 93 261 0 0 0 chr1 228269837 228269866 -14394487 + (TC)n Simple_repeat Simple_repeat 2 30 0 2071 192 83 22 chr1 228269866 228269961 -14394392 - MER74A LTR ERVL -465 93 5 2270 95 0 0 chr1 228269961 228270244 -14394109 + AluSq SINE Alu 1 283 -30 2308 202 34 0 chr1 228270281 228270781 -14393572 + L1MB5 LINE L1 5649 6165 -9 1409 180 4 0 chr1 228272097 228272341 -14392012 - Tigger3(Golem) DNA MER2_type -1 3028 2784 260 237 85 0 chr1 228272444 228272503 -14391850 - Tigger3(Golem) DNA MER2_type -2961 68 5 2587 153 2 2 chr1 228272744 228273142 -14391211 - L1PA16 LINE L1 0 6166 5769 666 144 0 0 chr1 228273142 228273246 -14391107 + L1PA16 LINE L1 5645 5748 -418 385 344 122 40 chr1 228273395 228273724 -14390629 - L2 LINE L2 -8 3264 2909 317 219 108 53 chr1 228276672 228276839 -14387514 + MIR SINE MIR 11 191 -60 184 327 0 0 chr1 228277082 228277137 -14387216 + MIR SINE MIR 186 240 -22 248 303 0 0 chr1 228277151 228277217 -14387136 + L2 LINE L2 2475 2540 -774 980 266 104 61 chr1 228277298 228278027 -14386326 + L2 LINE L2 2533 3313 0 189 233 0 0 chr1 228278193 228278236 -14386117 - L2 LINE L2 0 3313 3271 212 270 124 22 chr1 228278445 228278534 -14385819 - L2 LINE L2 -224 3048 2951 240 255 5 65 chr1 228278867 228279051 -14385302 + (CATATA)n Simple_repeat Simple_repeat 1 173 0 229 230 68 0 chr1 228279090 228279164 -14385189 - L1ME LINE L1 -298 5823 5745 270 306 30 13 chr1 228279272 228279397 -14384956 - MIR SINE MIR -38 170 49 506 243 29 43 chr1 228280175 228280315 -14384038 - MIR SINE MIR -78 184 47 2256 131 0 3 chr1 228281198 228281510 -14382843 + AluSp SINE Alu 3 313 0 2307 99 3 0 chr1 228283535 228283838 -14380515 + AluY SINE Alu 1 304 -7 2420 168 28 33 chr1 228284006 228284378 -14379975 - MSTB LTR MaLR 0 426 55 2364 99 3 13 chr1 228284378 228284692 -14379661 - AluSp SINE Alu -2 311 1 2420 168 28 33 chr1 228284692 228284747 -14379606 - MSTB LTR MaLR -371 55 1 232 279 111 70 chr1 228285216 228285388 -14378965 - MIR SINE MIR -33 229 51 4368 72 30 55 chr1 228285762 228286915 -14377438 + MER11A LTR ERVK 1 1266 0 2064 150 0 3 chr1 228287639 228287933 -14376420 - AluSx SINE Alu -19 293 1 3117 181 20 45 chr1 228287937 228288596 -14375757 - L1MC1 LINE L1 -7 6326 5685 889 261 21 25 chr1 228289116 228289396 -14374957 + LTR16A1 LTR ERVL 178 456 -1 343 277 113 86 chr1 228289500 228289915 -14374438 + HAL1 LINE L1 762 1165 -1342 2098 125 0 3 chr1 228289915 228290202 -14374151 + AluSg SINE Alu 1 286 -24 343 277 113 86 chr1 228290202 228290252 -14374101 + HAL1 LINE L1 1165 1212 -1295 1656 138 7 48 chr1 228290252 228290489 -14373864 + L1MA5 LINE L1 6020 6244 -56 2167 135 0 0 chr1 228290489 228290800 -14373553 + AluSx SINE Alu 1 311 -1 1656 138 7 48 chr1 228290800 228290853 -14373500 + L1MA5 LINE L1 6244 6298 -2 343 277 113 86 chr1 228290853 228291069 -14373284 + HAL1 LINE L1 1212 1462 -1045 276 324 49 10 chr1 228291782 228291884 -14372469 - L2 LINE L2 -2 3311 3206 284 296 93 22 chr1 228291885 228292210 -14372143 + L1P LINE L1 3871 4221 -1925 334 289 117 29 chr1 228292271 228292722 -14371631 + L1ME3A LINE L1 4781 5274 -872 789 268 101 35 chr1 228292928 228293354 -14370999 + L1ME3A LINE L1 5502 5955 -215 2134 100 14 0 chr1 228293354 228293666 -14370687 - AluSq SINE Alu 0 316 1 235 203 13 76 chr1 228293872 228293951 -14370402 - MLT1G-int LTR MaLR -1297 74 1 1271 227 109 12 chr1 228293952 228294291 -14370062 - MLT1G LTR MaLR -1 589 218 223 352 11 0 chr1 228295067 228295158 -14369195 + GA-rich Low_complexity Low_complexity 1 92 0 180 0 0 0 chr1 228295745 228295765 -14368588 + (A)n Simple_repeat Simple_repeat 1 20 0 4010 152 38 11 chr1 228295963 228296616 -14367737 + LTR51 LTR ERV1 1 671 0 245 291 13 13 chr1 228296840 228296919 -14367434 - MLT1J1-int LTR MaLR -1655 80 2 667 254 126 26 chr1 228296934 228297284 -14367069 - MLT1J1 LTR MaLR -12 434 50 300 309 47 32 chr1 228297315 228297593 -14366760 - L1ME LINE L1 -625 5539 5258 499 306 98 12 chr1 228298374 228298547 -14365806 - MIR3 SINE MIR -3 205 18 2269 100 0 0 chr1 228299288 228299587 -14364766 + AluSg SINE Alu 1 299 -11 216 0 0 0 chr1 228300830 228300854 -14363499 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2134 131 0 25 chr1 228300870 228301210 -14363143 - AluJo SINE Alu 0 332 1 1601 154 67 11 chr1 228303791 228304076 -14360277 + AluJb SINE Alu 1 301 -11 2157 145 36 22 chr1 228304486 228304845 -14359508 + THE1B LTR MaLR 1 364 0 266 281 234 0 chr1 228304928 228305056 -14359297 - MIR SINE MIR -35 227 70 2292 187 81 118 chr1 228305414 228306169 -14358184 + LTR8A LTR ERV1 1 727 0 338 291 143 11 chr1 228306175 228306357 -14357996 - MIR SINE MIR -24 238 33 557 141 10 0 chr1 228306748 228306847 -14357506 + GA-rich Low_complexity Low_complexity 2 101 0 20853 91 9 21 chr1 228307231 228310261 -14354092 + HERVH LTR ERV1 1 2995 -4718 1007 113 7 0 chr1 228310240 228310390 -14353963 + HERVH LTR ERV1 3140 3290 -4423 * 3397 115 2 6 chr1 228310380 228310884 -14353469 + HERVH LTR ERV1 3492 3993 -3720 4405 145 1 1 chr1 228310886 228311548 -14352805 + HERVH LTR ERV1 4488 5149 -2564 1356 113 18 57 chr1 228311549 228311778 -14352575 + HERVH LTR ERV1 5600 5819 -1894 * 2416 82 47 14 chr1 228311776 228312141 -14352212 + HERVH LTR ERV1 7322 7698 -15 1954 39 0 67 chr1 228313213 228313467 -14350886 - AluY SINE Alu -7 304 68 2770 191 70 28 chr1 228313690 228314301 -14350052 - LTR9B LTR ERV1 0 644 8 2391 154 4 76 chr1 228315271 228315555 -14348798 + L1MB3 LINE L1 5742 5980 -203 1836 112 7 18 chr1 228315555 228315833 -14348520 + AluSq SINE Alu 39 313 0 2391 154 4 76 chr1 228315833 228316023 -14348330 + L1MB3 LINE L1 5980 6182 -1 247 275 70 49 chr1 228316175 228316317 -14348036 + L1ME LINE L1 5675 5819 -302 3942 229 41 14 chr1 228316857 228318116 -14346237 - L1M4 LINE L1 -696 5976 4685 1597 168 13 50 chr1 228318121 228318266 -14346087 + AluJb SINE Alu 6 136 -176 3770 51 0 7 chr1 228318266 228318717 -14345636 + LTR7 LTR ERV1 1 448 -2 1597 168 13 50 chr1 228318717 228318869 -14345484 + AluJb SINE Alu 136 292 -20 6691 233 38 29 chr1 228318870 228321268 -14343085 - L1M4 LINE L1 -1947 4697 2277 1811 124 3 77 chr1 228321273 228321644 -14342709 - MER4A LTR ERV1 0 664 263 610 152 0 10 chr1 228321644 228321743 -14342610 - MER4A LTR ERV1 -566 98 1 4359 239 42 44 chr1 228321786 228323984 -14340369 - L1M4 LINE L1 -4362 2284 8 240 367 31 23 chr1 228324306 228324434 -14339919 + MIR3 SINE MIR 28 156 -52 334 226 0 0 chr1 228325443 228325505 -14338848 - MER81 DNA DNA 0 114 53 648 219 0 29 chr1 228325505 228325642 -14338711 + FLAM_A SINE Alu 1 133 0 1884 134 22 3 chr1 228325664 228326117 -14338236 + MER61D LTR ERV1 1 501 0 360 200 0 17 chr1 228326117 228326165 -14338188 - MER81 DNA DNA -67 47 1 4096 183 49 18 chr1 228326865 228327603 -14336750 + MER21B LTR ERV1 5 765 -98 34 24 0 0 chr1 228327811 228327852 -14336501 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr1 228327976 228327999 -14336354 + AT_rich Low_complexity Low_complexity 1 23 0 274 331 33 26 chr1 228328706 228328857 -14335496 + L1MC/D LINE L1 5556 5707 -455 239 178 22 0 chr1 228328858 228328903 -14335450 + L1MC/D LINE L1 5749 5794 -2014 2042 126 60 26 chr1 228329140 228329570 -14334783 + MER51B LTR ERV1 1 377 0 456 156 14 0 chr1 228329716 228329812 -14334541 - L1MA7 LINE L1 -460 5831 5751 233 142 19 160 chr1 228329751 228329857 -14334496 + L1MA7 LINE L1 6200 6290 -1 * 22 0 0 0 chr1 228330151 228330173 -14334180 + AT_rich Low_complexity Low_complexity 1 22 0 237 237 0 17 chr1 228330173 228330232 -14334121 + GA-rich Low_complexity Low_complexity 3 60 0 24 53 0 0 chr1 228330373 228330411 -14333942 + AT_rich Low_complexity Low_complexity 1 38 0 287 89 0 125 chr1 228330703 228330759 -14333594 - MER74B LTR ERVL -36 586 538 1969 175 63 36 chr1 228331084 228331525 -14332828 - MER74A LTR ERVL -105 453 1 2232 114 0 0 chr1 228332931 228333228 -14331125 - AluSx SINE Alu -14 298 2 2214 103 0 50 chr1 228333309 228333449 -14330904 + AluSx SINE Alu 1 146 -166 1971 134 17 3 chr1 228333449 228333747 -14330606 + AluSx SINE Alu 5 306 -6 2214 103 0 50 chr1 228333747 228333925 -14330428 + AluSx SINE Alu 146 303 -9 1602 157 14 35 chr1 228333934 228334221 -14330132 + AluJo SINE Alu 1 281 -31 24 0 0 0 chr1 228334224 228334248 -14330105 + AT_rich Low_complexity Low_complexity 1 24 0 1547 157 7 66 chr1 228334862 228335167 -14329186 + AluJo SINE Alu 1 287 -25 348 296 51 59 chr1 228335343 228335596 -14328757 - L2 LINE L2 -667 2647 2397 265 301 58 58 chr1 228335676 228335779 -14328574 + LTR48B LTR ERV1 1 103 -541 226 291 0 0 chr1 228335815 228335870 -14328483 + MER39 LTR ERV1 219 273 -434 * 1154 212 131 37 chr1 228335843 228336212 -14328141 + MER39 LTR ERV1 164 706 -1 1162 245 9 16 chr1 228336875 228337193 -14327160 + MER33 DNA MER1_type 9 324 0 320 347 8 0 chr1 228337696 228337817 -14326536 + MIR SINE MIR 15 136 -126 185 105 0 26 chr1 228338219 228338257 -14326096 + (TCTCC)n Simple_repeat Simple_repeat 2 38 0 2493 43 0 13 chr1 228338894 228339197 -14325156 + AluY SINE Alu 2 300 -11 316 198 117 18 chr1 228339247 228339358 -14324995 + L1MC4a LINE L1 5762 5883 -1925 21 0 0 0 chr1 228339580 228339601 -14324752 + AT_rich Low_complexity Low_complexity 1 21 0 760 181 0 58 chr1 228339607 228339738 -14324615 + L1MB2 LINE L1 6007 6128 -43 2251 85 4 0 chr1 228339738 228340043 -14324310 - AluSp SINE Alu 0 306 1 760 181 0 58 chr1 228340043 228340081 -14324272 + L1MB2 LINE L1 6128 6167 -4 189 208 0 42 chr1 228342168 228342216 -14322137 - MIR SINE MIR -106 156 111 594 288 84 32 chr1 228342331 228342581 -14321772 + MLT1J2 LTR MaLR 188 450 0 246 32 0 0 chr1 228342982 228343013 -14321340 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 401 351 54 8 chr1 228343213 228343452 -14320901 - MIR SINE MIR 0 262 13 1203 188 63 89 chr1 228347313 228347616 -14316737 + AluJb SINE Alu 1 295 -7 24 0 0 0 chr1 228347616 228347640 -14316713 + AT_rich Low_complexity Low_complexity 1 24 0 745 256 16 5 chr1 228348108 228348299 -14316054 + MIR SINE MIR 49 241 -21 279 113 77 36 chr1 228398998 228399166 -14265187 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 257 89 22 0 chr1 228399274 228399319 -14265034 + (TC)n Simple_repeat Simple_repeat 2 47 0 201 94 0 0 chr1 228399425 228399457 -14264896 + (TC)n Simple_repeat Simple_repeat 1 32 0 318 322 68 7 chr1 228399899 228400045 -14264308 - L3 LINE CR1 -102 1475 1321 543 354 77 44 chr1 228400240 228400785 -14263568 - L2 LINE L2 0 3272 2688 1804 157 6 32 chr1 228400785 228401097 -14263256 + AluSx SINE Alu 2 305 -7 543 354 77 44 chr1 228401097 228401315 -14263038 - L2 LINE L2 -584 2688 2479 1887 190 51 0 chr1 228401476 228401807 -14262546 - MER7A DNA MER2_type 0 346 1 2647 189 25 18 chr1 228404062 228404616 -14259737 - MER74A LTR ERVL 0 558 1 261 281 250 21 chr1 228404678 228404774 -14259579 - L2 LINE L2 -5 3267 3150 485 277 169 48 chr1 228405919 228406374 -14257979 - MLT1J LTR MaLR -1 510 1 2344 88 3 3 chr1 228406403 228406699 -14257654 + AluSg1 SINE Alu 1 296 -13 416 316 155 5 chr1 228406736 228406929 -14257424 - MIR SINE MIR 0 262 41 182 284 32 63 chr1 228407481 228407576 -14256777 - MIR SINE MIR -76 186 95 288 298 137 0 chr1 228407975 228408136 -14256217 - MIR SINE MIR 0 262 80 23 54 0 0 chr1 228408199 228408236 -14256117 + AT_rich Low_complexity Low_complexity 1 37 0 294 210 222 0 chr1 228408263 228408344 -14256009 - L2 LINE L2 -5 3267 3169 1058 155 6 0 chr1 228408389 228408550 -14255803 + FRAM SINE Alu 1 162 -14 1332 302 96 42 chr1 228410149 228410986 -14253367 + MER45C DNA AcHobo 72 953 0 601 287 80 32 chr1 228412031 228412498 -14251855 - L1ME LINE L1 -460 5702 5201 2232 99 0 3 chr1 228412498 228412791 -14251562 + AluY SINE Alu 20 311 0 601 287 80 32 chr1 228412791 228413004 -14251349 - L1ME LINE L1 -961 5201 5000 2263 124 3 0 chr1 228413367 228413673 -14250680 - AluSx SINE Alu -5 307 1 199 315 80 71 chr1 228413783 228414021 -14250332 - L2 LINE L2 -674 2640 2401 1224 240 46 41 chr1 228414079 228414445 -14249908 - MLT1A2 LTR MaLR 0 374 7 350 242 19 6 chr1 228414770 228414927 -14249426 + CT-rich Low_complexity Low_complexity 2 160 0 285 339 58 33 chr1 228414957 228415199 -14249154 + MLT1L LTR MaLR 368 615 0 2399 86 0 10 chr1 228416073 228416376 -14247977 - AluSg SINE Alu -10 300 1 199 273 79 65 chr1 228416404 228416543 -14247810 - L2 LINE L2 -1384 1930 1790 2307 108 3 0 chr1 228418142 228418447 -14245906 + AluSx SINE Alu 1 306 -6 249 259 86 0 chr1 228418622 228418680 -14245673 + L2 LINE L2 3185 3247 -25 1926 175 0 3 chr1 228419369 228419672 -14244681 + AluJo SINE Alu 3 304 -8 2074 95 53 3 chr1 228419678 228419961 -14244392 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr1 228421310 228421331 -14243022 + AT_rich Low_complexity Low_complexity 1 21 0 3815 143 36 5 chr1 228421332 228421998 -14242355 - L1MB3 LINE L1 -3 6180 5494 2079 124 0 17 chr1 228422128 228422481 -14241872 + AluSx SINE Alu 1 312 0 2797 108 37 16 chr1 228422672 228423107 -14241246 + L1PB2 LINE L1 5706 6149 -2 211 288 61 38 chr1 228426333 228426465 -14237888 + L2 LINE L2 2479 2613 -701 391 221 184 22 chr1 228426521 228426657 -14237696 + MER58C DNA MER1_type 44 201 -14 366 299 157 19 chr1 228426679 228426940 -14237413 + L2 LINE L2 2660 2956 -358 250 267 150 8 chr1 228426973 228427093 -14237260 + MIR SINE MIR 125 261 -1 245 333 20 10 chr1 228427160 228427262 -14237091 + L2 LINE L2 3134 3236 -36 2135 86 4 0 chr1 228427683 228427951 -14236402 - AluSp SINE Alu -14 299 31 23 0 0 0 chr1 228427964 228427987 -14236366 + AT_rich Low_complexity Low_complexity 1 23 0 1459 281 134 65 chr1 228430581 228431541 -14232812 + L2 LINE L2 157 1260 -2054 577 225 9 0 chr1 228431541 228431652 -14232701 - MER81 DNA DNA 0 114 3 1459 281 134 65 chr1 228431652 228432205 -14232148 + L2 LINE L2 1260 1774 -1540 219 310 49 25 chr1 228435483 228435630 -14228723 - MER5A DNA MER1_type -28 161 1 363 299 10 0 chr1 228435706 228435803 -14228550 - L2 LINE L2 -2 3270 3173 409 312 59 21 chr1 228437955 228438141 -14226212 - MIR SINE MIR -24 238 46 202 338 25 12 chr1 228438894 228438974 -14225379 + MIR SINE MIR 16 96 -112 853 189 24 12 chr1 228439378 228439542 -14224811 + AluJo SINE Alu 122 287 -25 39 22 0 0 chr1 228439542 228439588 -14224765 + AT_rich Low_complexity Low_complexity 1 46 0 347 233 47 12 chr1 228439617 228439874 -14224479 + (TTATA)n Simple_repeat Simple_repeat 1 265 0 2935 9 0 6 chr1 228440039 228440358 -14223995 - AluYb8 SINE Alu -1 317 1 212 163 20 20 chr1 228440432 228440481 -14223872 - MIR SINE MIR -68 140 92 250 274 24 0 chr1 228441441 228441525 -14222828 - MIR SINE MIR -29 233 148 33 0 0 0 chr1 228441525 228441558 -14222795 + AT_rich Low_complexity Low_complexity 1 33 0 2245 98 0 0 chr1 228441558 228441843 -14222510 - AluSg SINE Alu -25 285 1 2033 197 62 2 chr1 228441882 228442314 -14222039 + L1 LINE L1 4703 5160 -986 837 300 113 33 chr1 228442505 228442981 -14221372 + L2 LINE L2 2614 3156 -157 2923 140 15 61 chr1 228442981 228443489 -14220864 - L1MA5 LINE L1 0 6300 5821 279 0 0 0 chr1 228443489 228443520 -14220833 + (TG)n Simple_repeat Simple_repeat 2 32 0 2923 140 15 61 chr1 228443520 228443598 -14220755 - L1MA5 LINE L1 -479 5821 5741 837 300 113 33 chr1 228443598 228443770 -14220583 + L2 LINE L2 3156 3313 0 636 288 89 44 chr1 228446320 228446499 -14217854 - L1MEd LINE L1 -4573 1737 1568 5614 128 17 10 chr1 228446499 228447185 -14217168 - L1PA16 LINE L1 -9 6157 5476 2053 130 7 13 chr1 228447185 228447486 -14216867 - AluSx SINE Alu -13 299 1 5614 128 17 10 chr1 228447486 228448086 -14216267 - L1PA16 LINE L1 -690 5476 4882 636 288 89 44 chr1 228448086 228448674 -14215679 - L1MEd LINE L1 -4742 1568 904 230 275 8 58 chr1 228448843 228448963 -14215390 + L2 LINE L2 3200 3313 0 504 257 50 75 chr1 228449586 228449827 -14214526 - MER102b DNA MER1_type -4 337 103 381 323 63 19 chr1 228449989 228450147 -14214206 + L2 LINE L2 2223 2387 -927 231 154 39 19 chr1 228450162 228450214 -14214139 + MIR SINE MIR 113 165 -97 258 368 183 12 chr1 228451233 228451731 -14212622 + L2 LINE L2 2148 2730 -584 1023 243 16 49 chr1 228451793 228452180 -14212173 + L1M4 LINE L1 2247 2620 -3526 669 162 78 42 chr1 228452650 228452817 -14211536 - MIR SINE MIR 0 262 90 35 41 0 0 chr1 228453777 228453826 -14210527 + AT_rich Low_complexity Low_complexity 1 49 0 413 225 0 0 chr1 228454567 228454656 -14209697 - L1MA6 LINE L1 -3 6297 6209 245 305 136 28 chr1 228454807 228454984 -14209369 - MIR SINE MIR -42 220 25 194 388 37 7 chr1 228455845 228455980 -14208373 - MIR SINE MIR -77 131 16 321 272 40 8 chr1 228456323 228456448 -14207905 + MIR SINE MIR 86 214 -48 424 271 125 0 chr1 228456639 228456783 -14207570 + MIR SINE MIR 29 190 -72 206 406 56 0 chr1 228457011 228457208 -14207145 + L3b LINE CR1 1178 1385 -198 262 316 118 0 chr1 228457989 228458125 -14206228 + L2 LINE L2 3160 3311 -2 3107 129 26 0 chr1 228458141 228458636 -14205717 + L1PA16 LINE L1 5659 6166 0 342 0 0 0 chr1 228459839 228459877 -14204476 + (A)n Simple_repeat Simple_repeat 1 38 0 1607 213 92 39 chr1 228460987 228461475 -14202878 + MLT1E3 LTR MaLR 3 616 -8 406 292 22 15 chr1 228461790 228461927 -14202426 - L1ME LINE L1 -5896 174 37 252 337 42 32 chr1 228462084 228462179 -14202174 - L2 LINE L2 -38 3234 3139 184 351 18 18 chr1 228462185 228462296 -14202057 - MIR SINE MIR -128 134 24 387 244 42 17 chr1 228462348 228462467 -14201886 - L2 LINE L2 0 3313 3192 2228 114 0 0 chr1 228462804 228463094 -14201259 + AluSc SINE Alu 1 290 -19 194 338 44 7 chr1 228464535 228464671 -14199682 + L2 LINE L2 2567 2707 -607 202 344 103 10 chr1 228464789 228464861 -14199492 - L2 LINE L2 -657 2657 2593 288 0 0 0 chr1 228464861 228464893 -14199460 + (CA)n Simple_repeat Simple_repeat 1 32 0 202 344 103 10 chr1 228464893 228465015 -14199338 - L2 LINE L2 -721 2593 2445 6533 64 33 45 chr1 228465211 228466176 -14198177 + SVA Other Other 433 1386 0 180 0 0 0 chr1 228466855 228466875 -14197478 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 420 272 4 28 chr1 228467664 228467923 -14196430 + C-rich Low_complexity Low_complexity 1 252 0 692 255 55 128 chr1 228469541 228470126 -14194227 - MER34 LTR ERV1 0 542 1 2228 168 58 17 chr1 228470532 228470943 -14193410 + MSTC LTR MaLR 1 428 0 788 150 15 8 chr1 228473984 228474117 -14190236 - AluJo SINE Alu -178 134 1 2467 58 3 0 chr1 228474955 228475246 -14189107 - AluY SINE Alu -7 304 13 252 258 21 11 chr1 228475451 228475544 -14188809 + MIR SINE MIR 120 213 -49 4661 33 2 0 chr1 228475544 228476086 -14188267 - L1PA5 LINE L1 -1716 4430 3888 7538 53 5 0 chr1 228476086 228477783 -14186570 + L1PA5 LINE L1 4451 6152 -2 381 253 0 0 chr1 228477972 228478047 -14186306 - FRAM/FAM SINE Alu -97 78 4 2282 121 105 8 chr1 228478099 228478489 -14185864 - MSTA LTR MaLR 0 428 1 452 306 27 7 chr1 228480272 228480443 -14183910 + MIR SINE MIR 30 205 -57 2021 121 7 24 chr1 228480982 228481291 -14183062 - AluSx SINE Alu 0 304 1 805 181 0 0 chr1 228481328 228481455 -14182898 + FLAM_C SINE Alu 1 127 -16 389 243 62 14 chr1 228483565 228483709 -14180644 - MER115 DNA AcHobo -12 681 531 4175 183 63 10 chr1 228483710 228484780 -14179573 + L1MB7 LINE L1 5037 6165 -19 815 286 81 13 chr1 228484780 228485208 -14179145 - MER115 DNA AcHobo -148 545 50 601 283 4 47 chr1 228487837 228488070 -14176283 + MIR SINE MIR 14 236 -26 509 309 64 5 chr1 228488804 228489008 -14175345 + MIR SINE MIR 4 219 -43 2844 269 204 46 chr1 228489096 228489447 -14174906 - L2 LINE L2 -15 3298 3004 3389 166 2 0 chr1 228489447 228489977 -14174376 + LTR26B LTR ERV1 1 531 0 2844 269 204 46 chr1 228489977 228492045 -14172308 - L2 LINE L2 -309 3004 375 381 43 0 0 chr1 228492045 228492092 -14172261 + (CA)n Simple_repeat Simple_repeat 2 48 0 2844 269 204 46 chr1 228492092 228492440 -14171913 - L2 LINE L2 -2938 375 83 700 283 17 22 chr1 228494501 228494731 -14169622 - MIR SINE MIR -28 234 6 189 348 122 9 chr1 228495342 228495457 -14168896 + MIR3 SINE MIR 33 160 -48 353 305 137 0 chr1 228495519 228495650 -14168703 + MER117 DNA MER1_type 9 157 -40 1986 124 10 10 chr1 228496681 228496979 -14167374 + AluSg SINE Alu 1 298 -12 1657 158 3 71 chr1 228497220 228497531 -14166822 + AluJo SINE Alu 1 290 -22 3770 172 31 39 chr1 228497773 228498586 -14165767 + L1MB8 LINE L1 5373 6178 0 278 271 78 36 chr1 228498751 228498917 -14165436 + L1MC4a LINE L1 4903 5075 -1071 676 304 107 42 chr1 228499227 228499462 -14164891 + L1MC4a LINE L1 5323 5541 -2267 2559 74 0 0 chr1 228499462 228499773 -14164580 + AluY SINE Alu 1 311 0 676 304 107 42 chr1 228499773 228500079 -14164274 + L1MC4a LINE L1 5541 5899 -1909 253 191 48 16 chr1 228500304 228500367 -14163986 - MLT1G1 LTR MaLR -15 580 516 806 224 26 4 chr1 228500558 228500753 -14163600 - MLT1H LTR MaLR -309 240 1 1228 190 197 36 chr1 228500991 228501383 -14162970 + MSTB2 LTR MaLR 1 360 -4 4413 87 113 2 chr1 228501563 228502182 -14162171 - LTR12 LTR ERV1 0 688 1 546 339 17 4 chr1 228502867 228503097 -14161256 - MIR SINE MIR -28 234 2 216 67 0 0 chr1 228503172 228503202 -14161151 + (CA)n Simple_repeat Simple_repeat 1 30 0 2005 116 0 4 chr1 228503372 228503649 -14160704 + AluSc SINE Alu 27 302 -7 1988 129 10 19 chr1 228503804 228504114 -14160239 + AluSx SINE Alu 1 307 -5 1854 114 50 64 chr1 228505184 228505553 -14158800 + MLT2D LTR ERVL 1 466 -54 258 139 47 0 chr1 228505608 228505651 -14158702 + MLT2C1 LTR ERVL 350 394 -3 347 227 80 85 chr1 228506043 228506219 -14158134 - MLT1B LTR MaLR 0 549 375 408 222 0 0 chr1 228507789 228507897 -14156456 + (CA)n Simple_repeat Simple_repeat 1 108 0 297 0 0 0 chr1 228507965 228507998 -14156355 + (GA)n Simple_repeat Simple_repeat 2 34 0 513 299 6 12 chr1 228509031 228509198 -14155155 - MER5A DNA MER1_type -1 188 23 1467 143 81 48 chr1 228509294 228509566 -14154787 + Tigger2a DNA MER2_type 1 281 -153 1404 141 95 12 chr1 228509567 228509809 -14154544 + Tigger2 DNA MER2_type 2456 2717 -1 825 227 28 6 chr1 228511753 228511929 -14152424 + MLT1A1 LTR MaLR 140 319 -46 237 178 0 0 chr1 228511930 228511975 -14152378 + GA-rich Low_complexity Low_complexity 2 46 0 257 298 18 19 chr1 228511975 228512095 -14152258 - MIR SINE MIR -102 106 11 1654 179 20 88 chr1 228512278 228512674 -14151679 - MLT1B LTR MaLR -21 369 1 2355 88 0 0 chr1 228512958 228513252 -14151101 - AluY SINE Alu -17 294 1 658 178 91 81 chr1 228515153 228515350 -14149003 - MER105 DNA DNA -1 203 5 805 162 47 68 chr1 228516216 228516407 -14147946 - MER53 DNA DNA 0 189 3 2058 87 91 0 chr1 228516706 228516981 -14147372 - AluY SINE Alu -11 300 1 4544 94 27 60 chr1 228517289 228518183 -14146170 + SVA Other Other 195 868 -655 287 216 116 37 chr1 228522280 228522470 -14141883 - L1MC/D LINE L1 -2530 5465 5261 946 243 104 71 chr1 228523156 228523608 -14140745 + MLT1H LTR MaLR 79 545 -4 233 279 53 22 chr1 228526802 228526913 -14137440 - MIR3 SINE MIR -1 207 91 192 216 21 113 chr1 228528633 228528730 -14135623 - MIR3 SINE MIR -25 183 96 185 250 287 19 chr1 228528890 228528998 -14135355 - MIR SINE MIR -56 152 16 372 282 210 8 chr1 228532607 228532855 -14131498 - L2 LINE L2 -18 3295 2998 2315 144 58 19 chr1 228533099 228533509 -14130844 + MSTB LTR MaLR 1 426 0 2304 106 0 3 chr1 228533742 228534044 -14130309 + AluSq SINE Alu 1 301 -12 2470 71 0 0 chr1 228534256 228534550 -14129803 + AluY SINE Alu 1 294 -17 2177 174 8 11 chr1 228536661 228537028 -14127325 + MER47B DNA MER2_type 52 417 -1 3146 131 57 25 chr1 228537442 228538006 -14126347 + L1MC1 LINE L1 5747 6328 -5 252 0 0 0 chr1 228538025 228538053 -14126300 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr1 228539161 228539184 -14125169 + AT_rich Low_complexity Low_complexity 1 23 0 2280 105 0 0 chr1 228540081 228540375 -14123978 + AluY SINE Alu 1 294 -17 285 299 96 25 chr1 228541184 228541341 -14123012 + MIR3 SINE MIR 14 181 -27 451 311 56 5 chr1 228541685 228541881 -14122472 - MIR SINE MIR -20 242 37 189 0 0 0 chr1 228542053 228542074 -14122279 + (T)n Simple_repeat Simple_repeat 1 21 0 892 252 82 108 chr1 228546421 228547216 -14117137 + L1ME3A LINE L1 5308 6081 -81 722 248 61 0 chr1 228547547 228547745 -14116608 + MIR SINE MIR 48 257 -5 455 252 43 25 chr1 228548425 228548703 -14115650 - L1MC4 LINE L1 -4 8038 7702 288 274 57 32 chr1 228549886 228550010 -14114343 - L2 LINE L2 -1 3271 3145 232 355 0 0 chr1 228554757 228554819 -14109534 + MIR SINE MIR 32 93 -115 2493 84 0 0 chr1 228555969 228556279 -14108074 + AluSg SINE Alu 1 310 0 208 277 0 0 chr1 228557970 228558053 -14106300 + (TTAAA)n Simple_repeat Simple_repeat 4 86 0 529 217 168 25 chr1 228558320 228558523 -14105830 - MIR SINE MIR -10 252 21 21 0 0 0 chr1 228559909 228559930 -14104423 + AT_rich Low_complexity Low_complexity 1 21 0 524 239 80 0 chr1 228560090 228560228 -14104125 + L1MA10 LINE L1 6185 6333 -1 1510 149 118 9 chr1 228560647 228560996 -14103357 + Charlie5 DNA MER1_type 2234 2620 0 2502 70 0 0 chr1 228562936 228563237 -14101116 + AluY SINE Alu 1 301 -10 549 283 48 45 chr1 228563294 228563630 -14100723 + HAL1 LINE L1 1246 1582 -925 250 299 176 11 chr1 228567244 228567431 -14096922 - MIR SINE MIR -25 237 20 244 337 43 0 chr1 228568641 228568733 -14095620 + L2 LINE L2 3177 3272 0 2920 138 29 12 chr1 228569001 228569099 -14095254 + L1PA15 LINE L1 5679 5774 -391 2385 47 0 100 chr1 228569099 228569438 -14094915 + AluY SINE Alu 1 305 -6 2920 138 29 12 chr1 228569438 228569818 -14094535 + L1PA15 LINE L1 5774 6165 0 260 284 0 0 chr1 228571152 228571219 -14093134 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 27 0 0 0 chr1 228572538 228572565 -14091788 + AT_rich Low_complexity Low_complexity 1 27 0 781 210 127 0 chr1 228572881 228573062 -14091291 - MER3 DNA MER1_type -5 204 1 1882 172 0 0 chr1 228573209 228573512 -14090841 - AluJb SINE Alu -9 303 1 494 244 22 0 chr1 228573563 228573698 -14090655 - MIR SINE MIR -45 217 80 934 198 11 6 chr1 228576717 228576894 -14087459 - MER45A DNA AcHobo 0 178 1 435 149 0 0 chr1 228579184 228579258 -14085095 + (CA)n Simple_repeat Simple_repeat 2 75 0 1875 152 27 57 chr1 228579370 228579772 -14084581 + MLT1B LTR MaLR 1 390 0 2477 77 0 3 chr1 228580207 228580519 -14083834 + AluY SINE Alu 1 311 0 499 251 68 39 chr1 228582073 228582280 -14082073 + MIR SINE MIR 1 213 -49 449 301 33 38 chr1 228584385 228584568 -14079785 - MIR SINE MIR -34 228 47 188 224 0 52 chr1 228585936 228585994 -14078359 + L2 LINE L2 2929 2983 -330 287 353 59 0 chr1 228586099 228586235 -14078118 + L2 LINE L2 3170 3313 0 1354 157 27 4 chr1 228588293 228588554 -14075799 + L1MA4 LINE L1 6034 6300 0 270 269 168 26 chr1 228588955 228589151 -14075202 + L2 LINE L2 2792 3013 -300 253 240 0 0 chr1 228591137 228591187 -14073166 - MIR SINE MIR -34 228 179 182 37 37 0 chr1 228591203 228591230 -14073123 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 387 274 10 20 chr1 228591230 228591332 -14073021 - L2 LINE L2 -13 3300 3200 185 225 0 0 chr1 228592343 228592383 -14071970 - L2 LINE L2 -1 3312 3273 189 333 78 31 chr1 228595934 228596063 -14068290 + L2 LINE L2 3138 3272 0 1625 169 17 37 chr1 228597758 228598053 -14066300 + AluJo SINE Alu 1 289 -23 315 282 282 12 chr1 228598245 228598415 -14065938 + MLT1K LTR MaLR 2 217 -371 278 326 197 47 chr1 228598489 228598875 -14065478 + L2 LINE L2 2829 3272 0 485 289 223 23 chr1 228601457 228601942 -14062411 + L2 LINE L2 2067 2648 -666 423 217 127 25 chr1 228602351 228602508 -14061845 + MIR SINE MIR 47 219 -43 377 291 119 106 chr1 228604003 228604398 -14059955 + L1ME4a LINE L1 5407 5762 -359 241 277 58 7 chr1 228604513 228604650 -14059703 + L1ME4a LINE L1 5955 6098 -23 2144 99 0 62 chr1 228604962 228605284 -14059069 - AluSx SINE Alu -10 302 1 1958 142 55 19 chr1 228606043 228606410 -14057943 + Tigger3(Golem) DNA MER2_type 2649 3028 -1 701 277 24 5 chr1 228607082 228607288 -14057065 + L1ME1 LINE L1 5945 6154 -12 305 299 51 38 chr1 228607932 228608089 -14056264 + L2 LINE L2 2942 3100 -172 210 274 14 55 chr1 228608072 228608145 -14056208 + L2 LINE L2 3201 3270 -2 * 1577 169 62 81 chr1 228608394 228608890 -14055463 - MLT1D LTR MaLR -16 489 3 211 236 69 69 chr1 228608910 228608982 -14055371 - L2 LINE L2 0 3313 3242 9842 122 24 73 chr1 228609061 228609945 -14054408 + Tigger1 DNA MER2_type 371 1297 -1121 981 67 0 0 chr1 228609945 228610065 -14054288 - AluY SINE Alu -17 294 175 9842 122 24 73 chr1 228610065 228611013 -14053340 + Tigger1 DNA MER2_type 1297 2226 -192 1423 74 0 0 chr1 228611013 228611188 -14053165 - AluY SINE Alu -5 306 132 766 194 68 11 chr1 228611188 228611379 -14052974 + Tigger1 DNA MER2_type 2216 2417 -1 485 305 267 6 chr1 228611423 228611738 -14052615 - HAL1 LINE L1 -1817 690 294 307 277 46 15 chr1 228611890 228612020 -14052333 - HAL1 LINE L1 -2373 134 1 232 315 0 11 chr1 228612062 228612151 -14052202 + MIR SINE MIR 43 130 -132 1658 169 0 36 chr1 228613869 228614198 -14050155 + AluSx SINE Alu 1 312 0 2137 120 3 0 chr1 228614217 228614518 -14049835 + AluSx SINE Alu 1 302 -10 465 244 147 0 chr1 228614717 228614873 -14049480 - MIR SINE MIR -56 206 28 277 233 147 29 chr1 228616233 228616393 -14047960 - MIR SINE MIR -20 242 33 2481 190 57 13 chr1 228616858 228617469 -14046884 - L1MC3 LINE L1 -12 7773 7136 2318 88 0 3 chr1 228618770 228619067 -14045286 + AluSx SINE Alu 1 296 -16 728 215 128 47 chr1 228620004 228620325 -14044028 + MER7A DNA MER2_type 1 345 -1 5331 96 63 0 chr1 228621712 228622774 -14041579 + L1PA8A LINE L1 5017 6130 -1 456 19 0 0 chr1 228623983 228624036 -14040317 + (TG)n Simple_repeat Simple_repeat 2 54 0 299 203 25 38 chr1 228625654 228625733 -14038620 - MIR3 SINE MIR -18 190 113 392 116 58 0 chr1 228627093 228627162 -14037191 - L1PA16 LINE L1 -1 6165 6093 366 23 0 0 chr1 228631763 228631806 -14032547 + (CA)n Simple_repeat Simple_repeat 2 44 0 2216 108 3 0 chr1 228631808 228632096 -14032257 - AluSx SINE Alu -23 289 1 389 347 37 63 chr1 228633749 228634049 -14030304 + L2 LINE L2 2572 2863 -451 658 191 30 130 chr1 228635681 228635912 -14028441 + MER3 DNA MER1_type 2 209 0 1114 174 6 0 chr1 228636181 228636353 -14028000 - FAM SINE Alu -2 173 1 1930 135 20 10 chr1 228636499 228636802 -14027551 + MSTA-int LTR MaLR 1275 1580 0 1897 158 171 8 chr1 228636802 228637170 -14027183 + MSTA LTR MaLR 1 428 0 517 244 135 52 chr1 228638499 228638729 -14025624 - L3 LINE CR1 -459 1118 870 2486 63 0 7 chr1 228639125 228639425 -14024928 + AluY SINE Alu 1 298 -13 632 271 0 7 chr1 228639514 228639654 -14024699 + Tigger3(Golem) DNA MER2_type 7 145 -2884 1108 169 5 5 chr1 228640834 228641018 -14023335 - FRAM SINE Alu 0 176 1 216 0 0 0 chr1 228641193 228641217 -14023136 + (TA)n Simple_repeat Simple_repeat 1 24 0 191 393 27 36 chr1 228641386 228641498 -14022855 - MIR SINE MIR -60 148 38 268 267 198 26 chr1 228642053 228642169 -14022184 - MIR3 SINE MIR -6 202 67 2250 94 3 7 chr1 228643230 228643528 -14020825 - AluSc SINE Alu -12 297 1 363 337 77 24 chr1 228643730 228643899 -14020454 - MER5B DNA MER1_type 0 178 1 339 264 100 0 chr1 228644174 228644284 -14020069 - MIR SINE MIR -9 253 133 298 342 43 0 chr1 228644484 228644601 -14019752 + MIR SINE MIR 18 139 -123 325 378 16 0 chr1 228644607 228644734 -14019619 - L2 LINE L2 -1 3312 3184 1162 257 140 12 chr1 228645064 228645472 -14018881 - L2 LINE L2 -475 2839 2380 379 284 20 71 chr1 228646237 228646434 -14017919 + MER5A DNA MER1_type 1 187 -2 21 0 0 0 chr1 228647068 228647089 -14017264 + AT_rich Low_complexity Low_complexity 1 21 0 3224 211 11 18 chr1 228647101 228647844 -14016509 + L1M4 LINE L1 4516 5253 -893 183 139 0 56 chr1 228649547 228649583 -14014770 - L2 LINE L2 -192 3080 3047 1915 169 0 3 chr1 228650140 228650436 -14013917 + AluJb SINE Alu 1 295 -17 862 189 78 45 chr1 228650800 228651044 -14013309 + MIR SINE MIR 11 262 0 2280 108 0 0 chr1 228653208 228653515 -14010838 + AluSq SINE Alu 1 307 -6 2281 102 22 0 chr1 228654087 228654410 -14009943 + L1PA10 LINE L1 5796 6125 -43 593 37 0 12 chr1 228654415 228654496 -14009857 + (CATAA)n Simple_repeat Simple_repeat 5 84 0 23 0 0 0 chr1 228654511 228654534 -14009819 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 228655041 228655061 -14009292 + (A)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr1 228655122 228655143 -14009210 + (TC)n Simple_repeat Simple_repeat 2 22 0 185 286 0 0 chr1 228655318 228655360 -14008993 + MIR SINE MIR 68 109 -99 22 0 0 0 chr1 228655397 228655419 -14008934 + AT_rich Low_complexity Low_complexity 1 22 0 215 314 39 45 chr1 228655645 228655801 -14008552 + L2 LINE L2 2667 2821 -493 1346 160 286 32 chr1 228656493 228656770 -14007583 + Tigger2 DNA MER2_type 1 206 -2512 1461 201 7 14 chr1 228656770 228657064 -14007289 + AluJo SINE Alu 1 292 -20 1346 160 286 32 chr1 228657064 228657189 -14007164 + Tigger2 DNA MER2_type 206 2718 0 2332 75 3 3 chr1 228657466 228657758 -14006595 + AluY SINE Alu 1 292 -19 24 0 0 0 chr1 228658300 228658324 -14006029 + AT_rich Low_complexity Low_complexity 1 24 0 263 338 86 60 chr1 228659825 228660174 -14004179 - L2 LINE L2 -5 3267 2910 21 36 0 0 chr1 228660361 228660389 -14003964 + AT_rich Low_complexity Low_complexity 1 28 0 595 199 30 4 chr1 228662156 228662384 -14001969 + GA-rich Low_complexity Low_complexity 1 233 0 212 343 0 0 chr1 228662454 228662524 -14001829 + L2 LINE L2 3199 3268 -4 183 80 0 0 chr1 228663162 228663187 -14001166 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 824 133 175 0 chr1 228664275 228664441 -13999912 - Charlie3 DNA MER1_type -2515 195 1 729 306 91 33 chr1 228665056 228665771 -13998582 + L2 LINE L2 2291 3079 -193 658 137 0 0 chr1 228665785 228665887 -13998466 + Ricksha DNA DNA 2 103 -1943 4375 160 30 26 chr1 228665915 228666493 -13997860 + Ricksha DNA DNA 2350 2905 -346 2901 0 0 0 chr1 228666493 228666799 -13997554 - AluYa5 SINE Alu -4 307 2 4375 160 30 26 chr1 228666799 228667141 -13997212 + Ricksha DNA DNA 2905 3244 -7 243 277 0 0 chr1 228667208 228667255 -13997098 + L2 LINE L2 3137 3183 -89 4179 166 99 35 chr1 228669152 228670009 -13994344 + MER21A LTR ERV1 17 928 -3 1378 66 11 0 chr1 228670616 228670798 -13993555 - THE1A LTR MaLR 0 355 172 245 281 11 56 chr1 228670919 228671008 -13993345 - L2 LINE L2 0 3313 3229 2356 78 0 0 chr1 228672105 228672401 -13991952 + AluSg SINE Alu 1 296 -14 442 308 35 17 chr1 228672714 228672886 -13991467 + MIR3 SINE MIR 32 206 -2 725 152 0 0 chr1 228673485 228673584 -13990769 + AluJ/FLAM SINE Alu 2 100 -212 1996 162 0 0 chr1 228673983 228674292 -13990061 - AluSx SINE Alu -3 309 1 229 207 17 0 chr1 228674484 228674542 -13989811 - MER69 DNA AcHobo -58 2468 2410 443 271 208 0 chr1 228674709 228674945 -13989408 - LTR33A LTR ERVL -4 519 235 996 278 172 26 chr1 228675048 228675473 -13988880 - MLT1E LTR MaLR -85 508 22 371 233 174 70 chr1 228675510 228675682 -13988671 - LTR33A LTR ERVL -327 196 7 351 0 0 0 chr1 228675885 228675924 -13988429 + (CA)n Simple_repeat Simple_repeat 1 39 0 2110 255 79 13 chr1 228676301 228676857 -13987496 + MLT1G1 LTR MaLR 3 595 0 402 254 76 46 chr1 228676912 228677180 -13987173 - MLT1L LTR MaLR -3 611 231 2145 121 0 0 chr1 228678320 228678635 -13985718 + AluSx SINE Alu 1 315 0 2327 117 3 0 chr1 228679184 228679492 -13984861 - AluSp SINE Alu -4 309 1 200 281 0 0 chr1 228679522 228679579 -13984774 + L2 LINE L2 3216 3272 0 2095 146 0 0 chr1 228682291 228682593 -13981760 - AluJb SINE Alu -10 302 1 262 319 64 57 chr1 228683438 228683595 -13980758 - Charlie8 DNA MER1_type -2162 255 98 477 211 79 26 chr1 228685815 228685929 -13978424 + FLAM_C SINE Alu 2 121 -12 234 0 0 0 chr1 228686088 228686114 -13978239 + (A)n Simple_repeat Simple_repeat 1 26 0 2022 146 3 3 chr1 228686138 228686446 -13977907 + AluSx SINE Alu 1 308 -4 237 284 83 9 chr1 228687252 228687361 -13976992 - MLT1J2 LTR MaLR -67 383 267 284 354 9 0 chr1 228687964 228688077 -13976276 - L2 LINE L2 0 3272 3159 263 234 78 39 chr1 228688609 228688737 -13975616 + MER117 DNA MER1_type 29 161 -36 2345 108 8 25 chr1 228690688 228691049 -13973304 - THE1A LTR MaLR 0 355 1 11376 98 11 8 chr1 228691049 228692624 -13971729 - THE1A-int LTR MaLR 0 1580 1 2290 104 32 9 chr1 228692624 228692971 -13971382 - THE1A LTR MaLR 0 355 1 292 207 133 37 chr1 228693650 228693785 -13970568 - MER5C DNA MER1_type -48 276 129 2343 110 0 3 chr1 228694049 228694359 -13969994 - AluSg SINE Alu -1 309 1 228 232 121 30 chr1 228694481 228694580 -13969773 - Charlie3 DNA MER1_type -327 2383 2276 22 0 0 0 chr1 228695294 228695316 -13969037 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 228700127 228700147 -13964206 + (T)n Simple_repeat Simple_repeat 1 20 0 1747 159 75 17 chr1 228700255 228700600 -13963753 + MLT1A1 LTR MaLR 1 365 0 1547 189 3 29 chr1 228700684 228700991 -13963362 - AluJo SINE Alu -13 299 1 197 279 89 0 chr1 228701300 228701379 -13962974 + L2 LINE L2 2564 2649 -665 2562 47 0 41 chr1 228701395 228701715 -13962638 - AluY SINE Alu -4 307 1 453 229 59 53 chr1 228704087 228704257 -13960096 - MER5B DNA MER1_type -7 171 1 25 0 0 0 chr1 228705353 228705378 -13958975 + AT_rich Low_complexity Low_complexity 1 25 0 252 262 49 98 chr1 228706759 228706853 -13957500 + L2 LINE L2 3157 3245 -27 2327 70 0 51 chr1 228706853 228707169 -13957184 - AluY SINE Alu -11 300 1 252 262 49 98 chr1 228707169 228707196 -13957157 + L2 LINE L2 3245 3272 0 21 36 0 0 chr1 228708080 228708108 -13956245 + GC_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 228708664 228708700 -13955653 + GC_rich Low_complexity Low_complexity 1 36 0 222 136 0 23 chr1 228708736 228708780 -13955573 + (GGA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr1 228708782 228708804 -13955549 + GC_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr1 228708892 228708949 -13955404 + GC_rich Low_complexity Low_complexity 1 57 0 228 67 0 0 chr1 228710702 228710732 -13953621 + (CAG)n Simple_repeat Simple_repeat 1 30 0 1730 231 223 33 chr1 228714326 228714594 -13949759 + Charlie1a DNA MER1_type 3 219 -2542 2281 127 33 28 chr1 228714594 228714956 -13949397 + THE1B LTR MaLR 1 364 0 1730 231 223 33 chr1 228714956 228715545 -13948808 + Charlie1a DNA MER1_type 219 1023 -432 362 261 21 92 chr1 228715721 228715959 -13948394 + L1MC4 LINE L1 7821 8041 -1 2400 88 0 0 chr1 228716221 228716518 -13947835 + AluSg SINE Alu 1 297 -13 197 375 20 65 chr1 228717146 228717346 -13947007 - L3 LINE CR1 -5 1572 1382 187 298 35 44 chr1 228717550 228717664 -13946689 - MIR3 SINE MIR -9 199 87 2166 107 7 0 chr1 228717741 228718030 -13946323 - AluSx SINE Alu -20 292 2 428 257 106 5 chr1 228718302 228718520 -13945833 + L1ME4a LINE L1 5643 5882 -239 385 203 98 8 chr1 228718563 228718696 -13945657 + L1ME4a LINE L1 5975 6119 -2 207 61 61 41 chr1 228719148 228719197 -13945156 + (TATAA)n Simple_repeat Simple_repeat 2 51 0 2321 98 3 19 chr1 228720073 228720390 -13943963 - AluSx SINE Alu 0 312 1 1836 152 0 14 chr1 228720486 228720769 -13943584 + AluJb SINE Alu 1 279 -33 2645 111 39 10 chr1 228720770 228721184 -13943169 - MSTA LTR MaLR -2 426 1 382 234 143 7 chr1 228721237 228721391 -13942962 + MIR SINE MIR 88 262 0 1354 99 67 28 chr1 228722938 228723220 -13941133 - AluY SINE Alu -18 293 1 2307 93 13 13 chr1 228723226 228723536 -13940817 - AluSx SINE Alu 0 312 3 872 321 49 10 chr1 228724006 228724414 -13939939 - LTR16B LTR ERVL -12 452 29 522 232 0 0 chr1 228725109 228725273 -13939080 + G-rich Low_complexity Low_complexity 1 164 0 517 343 132 33 chr1 228725440 228725957 -13938396 + L2 LINE L2 2199 2811 -461 4536 48 52 0 chr1 228725957 228726519 -13937834 - LTR10C LTR ERV1 0 591 1 517 343 132 33 chr1 228726519 228726743 -13937610 + L2 LINE L2 2811 3011 -261 1418 154 67 57 chr1 228726967 228727265 -13937088 + MLT1A1 LTR MaLR 1 301 -64 2325 102 0 3 chr1 228727299 228727613 -13936740 - AluSq SINE Alu 0 313 1 783 191 0 15 chr1 228727613 228727744 -13936609 - AluJo/FLAM SINE Alu -182 130 2 398 175 0 0 chr1 228727744 228727807 -13936546 + MLT1A1 LTR MaLR 303 365 0 400 265 43 0 chr1 228727899 228728016 -13936337 - L1M4 LINE L1 -1979 4167 4046 * 1145 194 8 8 chr1 228728013 228728261 -13936092 - AluSg/x SINE Alu -5 307 65 240 217 29 14 chr1 228730560 228730629 -13933724 + (TA)n Simple_repeat Simple_repeat 1 70 0 6664 125 30 52 chr1 228730683 228731868 -13932485 - Tigger3b DNA MER2_type -59 1172 14 3579 117 12 58 chr1 228732079 228732652 -13931701 - LTR10B LTR ERV1 0 547 1 1651 116 13 0 chr1 228732750 228732974 -13931379 + AluSx SINE Alu 1 227 -85 231 369 50 7 chr1 228732974 228733115 -13931238 + MIR SINE MIR 7 153 -109 797 212 55 62 chr1 228733339 228733583 -13930770 + MLT1D LTR MaLR 20 249 -141 796 217 72 0 chr1 228733799 228733979 -13930374 + MLT1D LTR MaLR 311 503 -2 919 313 75 5 chr1 228733980 228734351 -13930002 - LTR16C LTR ERVL -6 485 89 23 78 0 0 chr1 228734489 228734540 -13929813 + AT_rich Low_complexity Low_complexity 1 51 0 289 294 116 29 chr1 228735619 228735894 -13928459 + HAL1 LINE L1 812 1110 -1397 514 252 9 0 chr1 228735961 228736076 -13928277 - MER58B DNA MER1_type -15 326 211 263 261 0 0 chr1 228736145 228736191 -13928162 - MER58B DNA MER1_type -284 57 12 297 266 77 109 chr1 228736215 228736505 -13927848 + HAL1 LINE L1 1113 1386 -1121 1374 188 109 0 chr1 228736505 228736771 -13927582 - AluJo SINE Alu -15 297 3 297 266 77 109 chr1 228736771 228736920 -13927433 + HAL1 LINE L1 1386 1538 -969 2261 109 3 0 chr1 228736923 228737226 -13927127 + AluSc SINE Alu 1 304 -5 803 206 13 0 chr1 228737227 228737382 -13926971 + AluJo/FRAM SINE Alu 136 292 -20 263 266 9 37 chr1 228737394 228737503 -13926850 + HAL1 LINE L1 1557 1662 -845 424 232 187 46 chr1 228737879 228738169 -13926184 + MLT1D LTR MaLR 1 336 -131 823 198 28 11 chr1 228738270 228738447 -13925906 + MSTD LTR MaLR 217 396 0 2122 94 0 0 chr1 228739235 228739502 -13924851 + AluY SINE Alu 37 303 -8 685 181 19 56 chr1 228739917 228740077 -13924276 - MER45 DNA AcHobo 0 1581 1428 578 183 113 0 chr1 228740088 228740203 -13924150 - MLT1E1 LTR MaLR 0 654 527 1353 200 0 0 chr1 228740203 228740443 -13923910 + L1MB1 LINE L1 5928 6167 -1 205 186 271 0 chr1 228740591 228740650 -13923703 + MIR SINE MIR 117 191 -71 338 71 0 18 chr1 228741029 228741085 -13923268 - Alu SINE Alu 0 308 254 476 162 0 19 chr1 228742917 228743022 -13921331 - MER96B DNA MER1_type? -240 177 75 259 308 126 14 chr1 228743088 228743231 -13921122 + ERVL LTR ERVL 765 923 -4841 369 216 39 10 chr1 228743617 228743719 -13920634 - L1ME4a LINE L1 -33 6088 5984 232 279 12 35 chr1 228743841 228743927 -13920426 + HAL1 LINE L1 2317 2400 -107 21 89 0 0 chr1 228744003 228744059 -13920294 + AT_rich Low_complexity Low_complexity 1 56 0 363 333 84 36 chr1 228744575 228744662 -13919691 + MIR SINE MIR 27 108 -154 2440 91 0 0 chr1 228744662 228744969 -13919384 - AluSq SINE Alu -6 307 1 363 333 84 36 chr1 228744969 228745106 -13919247 + MIR SINE MIR 108 262 0 2004 122 7 10 chr1 228745349 228745645 -13918708 - AluSg SINE Alu -7 303 9 219 22 44 44 chr1 228745658 228745703 -13918650 + (TTTTTA)n Simple_repeat Simple_repeat 3 47 0 21 0 0 0 chr1 228747275 228747296 -13917057 + AT_rich Low_complexity Low_complexity 1 21 0 272 301 49 130 chr1 228749335 228749581 -13914772 - L2 LINE L2 -9 3263 3038 2489 148 31 58 chr1 228755163 228755416 -13908937 + Tigger2a DNA MER2_type 1 238 -2470 2355 88 7 0 chr1 228755416 228755723 -13908630 + AluY SINE Alu 1 309 -2 2489 148 31 58 chr1 228755723 228755915 -13908438 + Tigger2a DNA MER2_type 238 434 0 2372 168 21 52 chr1 228756388 228756864 -13907489 + LOR1b LTR ERV1 1 461 0 422 203 25 76 chr1 228758214 228758332 -13906021 - AluSq/x SINE Alu -198 115 4 1749 149 47 0 chr1 228759962 228760237 -13904116 - AluSx SINE Alu -24 288 1 948 286 76 94 chr1 228760260 228760510 -13903843 + L2 LINE L2 2270 2523 -791 2167 128 3 0 chr1 228760510 228760816 -13903537 + AluSc SINE Alu 1 307 -2 948 286 76 94 chr1 228760816 228761233 -13903120 + L2 LINE L2 2523 2925 -389 1381 221 91 65 chr1 228761820 228762054 -13902299 - L1MC5 LINE L1 -50 7911 7684 2172 106 14 0 chr1 228762054 228762338 -13902015 - AluSx SINE Alu -24 288 1 1381 221 91 65 chr1 228762338 228762524 -13901829 - L1MC5 LINE L1 -277 7684 7504 1844 157 7 16 chr1 228762524 228762830 -13901523 - AluJb SINE Alu -9 303 1 1381 221 91 65 chr1 228762830 228763125 -13901228 - L1MC5 LINE L1 -457 7504 7246 1516 227 76 74 chr1 228763153 228763782 -13900571 - L1MC4 LINE L1 -733 7228 6629 194 325 117 0 chr1 228765072 228765149 -13899204 + MIR SINE MIR 35 120 -88 2556 39 0 23 chr1 228765498 228765806 -13898547 - AluY SINE Alu -10 301 1 35 41 0 0 chr1 228766422 228766471 -13897882 + AT_rich Low_complexity Low_complexity 1 49 0 2283 95 0 3 chr1 228766514 228766809 -13897544 + AluY SINE Alu 1 294 -17 651 251 149 44 chr1 228767470 228767765 -13896588 + LTR33A LTR ERVL 1 326 -197 1387 244 36 26 chr1 228767803 228768189 -13896164 - MLT1C LTR MaLR -2 465 76 1649 171 0 40 chr1 228769267 228769565 -13894788 - AluJo SINE Alu -26 286 1 236 91 23 0 chr1 228769625 228769669 -13894684 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 500 326 127 49 chr1 228769671 228769925 -13894428 - L2 LINE L2 -16 3297 3064 2246 117 54 38 chr1 228769925 228770294 -13894059 + THE1C LTR MaLR 1 375 0 500 326 127 49 chr1 228770294 228770801 -13893552 - L2 LINE L2 -249 3064 2488 1841 239 112 20 chr1 228770802 228771338 -13893015 + MLT1E LTR MaLR 1 585 -8 184 276 158 46 chr1 228771362 228771514 -13892839 - L2 LINE L2 -841 2473 2305 391 289 127 30 chr1 228771932 228772129 -13892224 + MIR SINE MIR 22 237 -25 236 214 48 0 chr1 228772097 228772139 -13892214 + L2 LINE L2 3210 3253 -19 * 407 331 69 45 chr1 228772244 228772474 -13891879 + L2 LINE L2 1630 1872 -1442 2193 93 7 7 chr1 228772474 228772763 -13891590 - AluSc SINE Alu -20 289 1 407 331 69 45 chr1 228772763 228772867 -13891486 + L2 LINE L2 1872 1972 -1342 353 319 134 46 chr1 228772903 228773278 -13891075 + L2 LINE L2 2160 2500 -814 2308 120 60 20 chr1 228773278 228773628 -13890725 + THE1B LTR MaLR 1 364 0 353 319 134 46 chr1 228773628 228773929 -13890424 + L2 LINE L2 2500 2896 -418 2212 91 7 0 chr1 228773985 228774281 -13890072 - AluSg SINE Alu -12 298 1 270 285 177 49 chr1 228774300 228774588 -13889765 + L2 LINE L2 2944 3268 -4 480 349 141 39 chr1 228774600 228774990 -13889363 + L2 LINE L2 2884 3313 0 2129 108 13 3 chr1 228775109 228775414 -13888939 + AluSg SINE Alu 1 308 -2 332 315 88 55 chr1 228775641 228775914 -13888439 + HERV16 LTR ERVL 3837 4118 -878 4815 42 14 9 chr1 228775996 228776574 -13887779 - LTR10C LTR ERV1 0 591 11 1068 328 64 36 chr1 228776577 228777346 -13887007 + HERV16 LTR ERVL 4538 5327 -437 1844 112 22 7 chr1 228777885 228778162 -13886191 - AluSx SINE Alu -31 281 1 1600 183 0 0 chr1 228778166 228778455 -13885898 - L1 LINE L1 -1773 4373 4085 * 6364 148 1 14 chr1 228778445 228779501 -13884852 + L1PB1 LINE L1 4443 5511 -640 2102 101 0 20 chr1 228779501 228779827 -13884526 + AluSx SINE Alu 1 320 0 6364 148 1 14 chr1 228779827 228780134 -13884219 + L1PB1 LINE L1 5511 5820 -331 246 62 0 0 chr1 228780134 228780166 -13884187 + (CA)n Simple_repeat Simple_repeat 2 33 0 6364 148 1 14 chr1 228780166 228780521 -13883832 + L1PB1 LINE L1 5820 6146 -5 1075 257 63 68 chr1 228780589 228781033 -13883320 + MLT1H LTR MaLR 2 443 -106 317 341 38 23 chr1 228781083 228781215 -13883138 + L1ME4a LINE L1 5380 5513 -608 396 246 182 34 chr1 228781222 228781486 -13882867 + L1ME4a LINE L1 5553 5855 -266 204 40 0 0 chr1 228781679 228781704 -13882649 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 815 184 53 0 chr1 228781704 228781856 -13882497 - AluSg/x SINE Alu -32 277 118 188 35 35 0 chr1 228782048 228782077 -13882276 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 8035 14 0 0 chr1 228782081 228783409 -13880944 - L1PA2 LINE L1 0 6155 4828 1853 145 10 3 chr1 228783440 228783736 -13880617 + AluSx SINE Alu 1 298 -14 245 285 118 53 chr1 228784011 228784239 -13880114 - MLT1K LTR MaLR -9 579 337 204 40 0 0 chr1 228785225 228785250 -13879103 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1439 296 78 89 chr1 228785342 228786315 -13878038 - L2 LINE L2 0 3313 2345 1743 258 25 40 chr1 228786315 228786843 -13877510 - LTR33 LTR ERVL 0 521 2 1439 296 78 89 chr1 228786843 228787298 -13877055 - L2 LINE L2 -968 2345 1887 2255 100 0 3 chr1 228787339 228787650 -13876703 + AluSg SINE Alu 1 310 0 2096 160 31 93 chr1 228787957 228788513 -13875840 + Charlie1b DNA MER1_type 3 523 0 503 295 70 15 chr1 228788630 228788884 -13875469 + L1ME LINE L1 5490 5763 -407 331 277 139 36 chr1 228788994 228789160 -13875193 + L1MC5 LINE L1 7772 7954 -7 1132 167 52 134 chr1 228789843 228790172 -13874181 + MLT1A1 LTR MaLR 1 302 -63 1826 223 52 52 chr1 228790272 228790814 -13873539 + MER92B LTR ERV1 28 569 -67 282 246 0 0 chr1 228790831 228790900 -13873453 + MER92B LTR ERV1 545 613 -23 2115 117 7 0 chr1 228790905 228791214 -13873139 - AluSx SINE Alu -1 311 1 278 380 67 7 chr1 228791318 228791468 -13872885 + L2 LINE L2 3114 3272 0 310 231 0 77 chr1 228792194 228792298 -13872055 - L1 LINE L1 -1714 4432 4337 993 148 0 48 chr1 228792401 228792610 -13871743 + AluJo SINE Alu 106 305 0 2478 50 3 0 chr1 228793009 228793310 -13871043 + AluY SINE Alu 1 302 -9 208 231 0 0 chr1 228794228 228794267 -13870086 + polypurine Low_complexity Low_complexity 3 41 0 1424 169 10 75 chr1 228794745 228794909 -13869444 - AluJo SINE Alu -21 291 155 2151 100 20 0 chr1 228794909 228795208 -13869145 - AluSx SINE Alu -7 305 1 1424 169 10 75 chr1 228795208 228795351 -13869002 - AluJo SINE Alu -157 155 4 232 318 24 24 chr1 228795665 228795750 -13868603 + L3 LINE CR1 1397 1481 -96 232 354 24 0 chr1 228796226 228796308 -13868045 + MIR SINE MIR 162 245 -17 204 299 60 0 chr1 228796436 228796503 -13867850 + L2 LINE L2 1639 1709 -1605 678 247 36 0 chr1 228796716 228796882 -13867471 + MER5B DNA MER1_type 2 173 -5 3020 166 72 76 chr1 228798442 228799136 -13865217 - MER21A LTR ERV1 0 931 241 328 68 0 0 chr1 228799136 228799180 -13865173 + L1PA10 LINE L1 6119 6162 -6 558 286 48 4 chr1 228799233 228799522 -13864831 - L1 LINE L1 -2157 3989 3686 191 271 150 29 chr1 228800053 228800193 -13864160 + L3b LINE CR1 1231 1387 -196 299 302 74 34 chr1 228800822 228800971 -13863382 + MER5A DNA MER1_type 5 159 -30 24 85 0 0 chr1 228801118 228801177 -13863176 + AT_rich Low_complexity Low_complexity 1 59 0 286 288 180 45 chr1 228801371 228801593 -13862760 - MIR SINE MIR -10 252 1 1039 90 0 0 chr1 228802646 228802779 -13861574 + AluSq/x SINE Alu 1 133 -179 1995 126 0 10 chr1 228802784 228803094 -13861259 + AluSx SINE Alu 1 307 -5 472 226 150 23 chr1 228803400 228803533 -13860820 - FAM SINE Alu -27 158 9 396 198 12 0 chr1 228804088 228804169 -13860184 - MER20 DNA MER1_type 0 219 138 233 228 0 76 chr1 228806393 228806472 -13857881 - Zaphod DNA AcHobo -165 3866 3794 8549 64 5 0 chr1 228806474 228808335 -13856018 - L1PA7 LINE L1 0 6154 4274 2175 89 3 0 chr1 228809100 228809427 -13854926 - AluSp SINE Alu 0 328 1 886 108 0 43 chr1 228809455 228809594 -13854759 + FRAM SINE Alu 29 161 -15 2000 86 4 4 chr1 228810915 228811184 -13853169 + AluSp SINE Alu 45 313 0 1138 168 18 54 chr1 228813341 228813969 -13850384 - MER4A LTR ERV1 0 695 1 211 178 14 27 chr1 228813974 228814047 -13850306 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 1913 91 0 15 chr1 228814463 228814727 -13849626 + AluSq SINE Alu 1 260 -53 392 253 21 65 chr1 228814964 228815150 -13849203 - HAL1 LINE L1 -10 2497 2320 292 336 36 29 chr1 228815494 228815634 -13848719 - MIR SINE MIR -2 260 120 1821 129 109 37 chr1 228815635 228815985 -13848368 - THE1C LTR MaLR 0 375 1 10246 117 18 33 chr1 228815989 228817586 -13846767 - THE1C-int LTR MaLR -4 1576 4 1730 132 79 32 chr1 228817591 228817931 -13846422 - THE1C LTR MaLR -2 373 18 380 313 9 0 chr1 228817933 228818045 -13846308 - MIR SINE MIR -141 121 9 280 296 88 48 chr1 228818614 228818700 -13845653 + L2 LINE L2 2672 2753 -561 2204 209 13 4 chr1 228818700 228819163 -13845190 - MLT1C LTR MaLR 0 467 1 280 296 88 48 chr1 228819163 228819370 -13844983 + L2 LINE L2 2753 2977 -337 309 221 128 60 chr1 228819727 228819876 -13844477 - MER115 DNA AcHobo -393 300 142 2388 54 0 0 chr1 228821158 228821452 -13842901 - AluY SINE Alu -17 294 1 22 0 0 0 chr1 228822182 228822204 -13842149 + AT_rich Low_complexity Low_complexity 1 22 0 358 270 30 10 chr1 228823719 228823819 -13840534 + MER81 DNA DNA 12 113 -1 243 0 0 0 chr1 228826489 228826516 -13837837 + (A)n Simple_repeat Simple_repeat 1 27 0 2444 83 0 3 chr1 228828608 228828909 -13835444 + AluSg SINE Alu 1 300 -10 205 306 132 0 chr1 228829643 228829764 -13834589 + L2 LINE L2 2256 2392 -922 244 336 55 8 chr1 228830211 228830339 -13834014 + MIR SINE MIR 13 146 -116 21 0 0 0 chr1 228831841 228831862 -13832491 + AT_rich Low_complexity Low_complexity 1 21 0 1293 128 47 8 chr1 228834247 228834481 -13829872 + L1MA6 LINE L1 6058 6300 0 992 181 68 0 chr1 228835691 228835896 -13828457 + MSTD LTR MaLR 1 219 -177 240 300 57 0 chr1 228835896 228835966 -13828387 + L2 LINE L2 3240 3313 0 3176 194 104 20 chr1 228836101 228837114 -13827239 - L1MDa LINE L1 -4363 2177 1053 665 224 118 7 chr1 228837117 228837269 -13827084 - L1MDa LINE L1 -6352 188 20 218 284 25 12 chr1 228837815 228837896 -13826457 - MIR3 SINE MIR -11 197 116 1615 199 3 3 chr1 228837898 228838194 -13826159 + AluJb SINE Alu 1 296 -16 273 108 0 0 chr1 228838223 228838260 -13826093 + Alu SINE Alu 1 37 -264 26 30 0 0 chr1 228838303 228838336 -13826017 + AT_rich Low_complexity Low_complexity 1 33 0 805 268 92 14 chr1 228838801 228839085 -13825268 + L2 LINE L2 3008 3313 0 225 301 183 0 chr1 228839624 228839777 -13824576 - MER5A DNA MER1_type 0 189 9 383 220 54 2 chr1 228839806 228839909 -13824444 + MER3 DNA MER1_type 65 123 -86 261 215 0 51 chr1 228839912 228839991 -13824362 + MER3 DNA MER1_type 135 209 0 * 342 247 22 11 chr1 228839991 228840037 -13824316 - MER3 DNA MER1_type -162 47 1 323 164 75 0 chr1 228840876 228840943 -13823410 - MLT1F LTR MaLR -463 79 8 1645 180 105 6 chr1 228841329 228841673 -13822680 + MLT1F1 LTR MaLR 190 567 0 232 275 35 49 chr1 228843915 228844057 -13820296 - L1ME LINE L1 -460 5661 5522 21 89 0 0 chr1 228844087 228844143 -13820210 + AT_rich Low_complexity Low_complexity 1 56 0 364 314 85 31 chr1 228845093 228845316 -13819037 - MIR SINE MIR 0 262 28 1817 228 117 41 chr1 228846116 228846744 -13817609 + L1MC4 LINE L1 7225 7922 -120 372 22 0 0 chr1 228846744 228846789 -13817564 + (CA)n Simple_repeat Simple_repeat 2 46 0 1817 228 117 41 chr1 228846789 228846918 -13817435 + L1MC4 LINE L1 7922 8040 -2 536 171 241 12 chr1 228848404 228848574 -13815779 + MIR SINE MIR 52 260 -2 458 294 95 49 chr1 228848641 228848968 -13815385 + L1ME4a LINE L1 4751 5092 -1054 32 26 0 0 chr1 228849722 228849761 -13814592 + AT_rich Low_complexity Low_complexity 1 39 0 2354 107 0 0 chr1 228849983 228850291 -13814062 + AluSg SINE Alu 1 308 -2 1923 161 3 13 chr1 228850386 228850696 -13813657 - AluSx SINE Alu -5 307 1 2018 133 67 25 chr1 228851178 228851538 -13812815 - THE1C LTR MaLR 0 375 1 402 260 186 38 chr1 228852174 228852434 -13811919 - L2 LINE L2 -285 3028 2737 397 333 112 8 chr1 228852708 228852966 -13811387 + L2 LINE L2 2994 3278 -35 1966 222 50 2 chr1 228852982 228853522 -13810831 + L1M4 LINE L1 3183 3748 -2398 1002 201 0 0 chr1 228853538 228853722 -13810631 + L1M4 LINE L1 4009 4192 -1954 213 94 0 0 chr1 228855070 228855102 -13809251 + (A)n Simple_repeat Simple_repeat 1 32 0 567 268 0 13 chr1 228855882 228856039 -13808314 - MIR SINE MIR -35 227 73 585 277 73 56 chr1 228856551 228857057 -13807296 + L1ME4a LINE L1 5605 6118 -3 1525 275 26 7 chr1 228857352 228857767 -13806586 - LTR16C LTR ERVL 0 491 69 999 172 22 0 chr1 228857937 228858117 -13806236 + AluJb SINE Alu 120 303 -9 1684 190 7 3 chr1 228858120 228858425 -13805928 + AluJo SINE Alu 5 310 -2 390 281 64 15 chr1 228858425 228858629 -13805724 + HAL1 LINE L1 2090 2500 -7 749 257 66 26 chr1 228859373 228859645 -13804708 + Charlie4a DNA MER1_type 38 320 -188 410 237 16 86 chr1 228860420 228860505 -13803848 - MER5B DNA MER1_type -5 173 106 1593 164 241 5 chr1 228860505 228860907 -13803446 - LTR54B LTR ERV1 -1 497 1 410 237 16 86 chr1 228860907 228861007 -13803346 - MER5B DNA MER1_type -72 106 1 265 207 72 72 chr1 228861832 228861943 -13802410 + L1ME3A LINE L1 6058 6168 -2 1451 211 27 44 chr1 228862074 228862439 -13801914 + MLT1A2 LTR MaLR 5 363 -11 557 261 73 50 chr1 228863197 228863415 -13800938 + MLT1K LTR MaLR 11 233 -355 194 329 119 56 chr1 228863511 228863707 -13800646 + L2 LINE L2 2968 3185 -87 2118 104 37 13 chr1 228863707 228864006 -13800347 + AluSx SINE Alu 1 306 -6 194 329 119 56 chr1 228864006 228864061 -13800292 + L2 LINE L2 3185 3235 -37 1032 255 83 7 chr1 228864070 228864689 -13799664 - L2 LINE L2 -34 3279 2607 2107 125 0 10 chr1 228865016 228865321 -13799032 + AluSc SINE Alu 1 302 -7 384 171 29 0 chr1 228865370 228865440 -13798913 + AluSc SINE Alu 228 299 0 1040 266 213 68 chr1 228865688 228866233 -13798120 + MLT1E2 LTR MaLR 6 629 -25 1221 230 122 56 chr1 228866320 228866781 -13797572 - MER101B LTR ERV1 -67 503 13 277 122 0 0 chr1 228866906 228866947 -13797406 - MLT1F1 LTR MaLR -526 41 1 213 428 18 12 chr1 228866972 228867138 -13797215 - MIR SINE MIR -50 212 46 688 199 6 6 chr1 228867953 228868119 -13796234 + CT-rich Low_complexity Low_complexity 4 169 0 431 208 174 34 chr1 228868437 228868586 -13795767 - MIR SINE MIR -1 261 92 1294 158 6 149 chr1 228868669 228868992 -13795361 - MER7A DNA MER2_type -7 339 65 875 114 0 0 chr1 228869006 228869120 -13795233 - AluJb SINE Alu -194 118 5 325 259 0 0 chr1 228869121 228869179 -13795174 - MER7A DNA MER2_type -289 59 2 218 324 10 29 chr1 228870668 228870770 -13793583 + L2 LINE L2 2910 3009 -263 1927 138 138 44 chr1 228870793 228871104 -13793249 - LTR47A LTR ERVL 0 452 91 2686 33 0 0 chr1 228871104 228871403 -13792950 - AluY SINE Alu -11 300 2 1927 138 138 44 chr1 228871403 228871504 -13792849 - LTR47A LTR ERVL -361 91 1 219 260 10 87 chr1 228871569 228871673 -13792680 + L2 LINE L2 3164 3259 -54 576 92 58 100 chr1 228872019 228872139 -13792214 + L1M3 LINE L1 5423 5537 -634 420 222 46 79 chr1 228872152 228872368 -13791985 - L1MC5 LINE L1 -407 7554 7346 255 297 11 33 chr1 228872506 228872597 -13791756 - MIR SINE MIR -14 248 160 404 181 14 0 chr1 228872608 228872680 -13791673 + LTR67 LTR ERVL 8 80 -477 254 308 86 8 chr1 228872727 228872844 -13791509 + MLT1L LTR MaLR 431 556 -59 539 325 91 0 chr1 228873576 228873773 -13790580 - L2 LINE L2 -261 3052 2838 208 0 0 59 chr1 228873821 228873855 -13790498 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1955 132 4 0 chr1 228873857 228874137 -13790216 - AluSx SINE Alu -31 281 1 474 178 186 51 chr1 228874236 228874354 -13789999 - MLT2D LTR ERVL 0 464 331 1098 210 9 5 chr1 228874355 228874579 -13789774 - MLT2D LTR ERVL -188 226 2 900 286 181 28 chr1 228874976 228875539 -13788814 - MLT2F LTR ERVL -14 649 1 328 291 8 31 chr1 228875580 228875707 -13788646 - ERVL-F LTR ERVL -49 5715 5592 1548 75 10 0 chr1 228875714 228875913 -13788440 + AluSq SINE Alu 113 313 0 2086 79 0 69 chr1 228875926 228876217 -13788136 + AluSc SINE Alu 5 275 -34 1372 92 12 0 chr1 228876239 228876412 -13787941 - AluY SINE Alu -136 175 1 1377 288 74 10 chr1 228876414 228876901 -13787452 - ERVL-F LTR ERVL -797 4967 4450 4511 260 46 27 chr1 228876976 228877004 -13787349 - ERVL LTR ERVL -2765 2999 2973 2275 99 7 0 chr1 228877004 228877298 -13787055 + AluSx SINE Alu 1 296 -16 4511 260 46 27 chr1 228877298 228877458 -13786895 - ERVL LTR ERVL -2791 2973 2817 2072 254 23 10 chr1 228877458 228877970 -13786383 - LTR40a LTR ERVL 0 519 1 4511 260 46 27 chr1 228877970 228878953 -13785400 - ERVL LTR ERVL -2947 2817 1797 579 227 61 6 chr1 228878953 228879116 -13785237 + MER96 DNA MER1_type 4 175 0 4511 260 46 27 chr1 228879116 228879275 -13785078 - ERVL LTR ERVL -3967 1797 1642 309 275 0 11 chr1 228880751 228880842 -13783511 - MIR SINE MIR -22 240 151 406 254 88 63 chr1 228880891 228881096 -13783257 - L1ME2 LINE L1 -114 6050 5841 2044 135 4 0 chr1 228881267 228881575 -13782778 + AluSx SINE Alu 1 309 0 269 292 83 8 chr1 228882095 228882215 -13782138 - MIR SINE MIR 0 262 134 209 171 0 24 chr1 228882600 228882641 -13781712 + MIR SINE MIR 107 146 -116 253 289 109 78 chr1 228882964 228883051 -13781302 + L2 LINE L2 2960 3043 -229 2322 98 48 31 chr1 228883051 228883408 -13780945 + THE1B LTR MaLR 1 363 -1 253 289 109 78 chr1 228883408 228883604 -13780749 + L2 LINE L2 3043 3252 -20 268 316 43 8 chr1 228885311 228885428 -13778925 + MIR SINE MIR 25 145 -63 2713 79 8 3 chr1 228887192 228887545 -13776808 + THE1A LTR MaLR 1 355 0 1283 191 67 39 chr1 228887860 228888142 -13776211 + AluJo SINE Alu 1 290 -22 1403 230 58 26 chr1 228888285 228888663 -13775690 + MLT1B LTR MaLR 1 390 0 189 74 0 0 chr1 228889195 228889222 -13775131 + (TC)n Simple_repeat Simple_repeat 2 28 0 318 106 0 0 chr1 228889239 228889286 -13775067 + (CA)n Simple_repeat Simple_repeat 2 48 0 2323 153 21 23 chr1 228889783 228890168 -13774185 - MLT1C LTR MaLR -83 384 1 437 266 43 21 chr1 228890545 228890733 -13773620 + L1M4 LINE L1 4120 4311 -1835 935 270 26 26 chr1 228890803 228890962 -13773391 + L1M4 LINE L1 4310 4468 -1678 2139 152 55 31 chr1 228890962 228891384 -13772969 - MSTB1 LTR MaLR 0 432 1 935 270 26 26 chr1 228891384 228891690 -13772663 + L1M4 LINE L1 4467 4775 -1371 355 200 0 0 chr1 228891723 228891778 -13772575 + Tigger2 DNA MER2_type 1 55 -2663 2308 73 14 0 chr1 228891778 228892065 -13772288 - AluSg SINE Alu -19 291 1 1770 118 57 4 chr1 228892089 228892369 -13771984 + Tigger2 DNA MER2_type 2280 2574 -144 666 263 212 45 chr1 228893435 228894189 -13770164 + HAL1 LINE L1 1627 2506 -1 189 0 0 0 chr1 228895300 228895321 -13769032 + (CA)n Simple_repeat Simple_repeat 1 21 0 25 31 0 0 chr1 228895908 228895940 -13768413 + AT_rich Low_complexity Low_complexity 1 32 0 4757 49 7 12 chr1 228895945 228896536 -13767817 + LTR10C LTR ERV1 4 591 0 476 65 16 0 chr1 228897863 228897955 -13766398 - AluSg/x SINE Alu 0 311 219 1375 138 39 22 chr1 228898303 228898534 -13765819 + MER46A DNA MER2_type 1 235 -1 390 296 0 9 chr1 228898621 228898729 -13765624 - HAL1b LINE L1 -742 606 500 1879 204 108 18 chr1 228899057 228899512 -13764841 - MER74A LTR ERVL 0 558 63 1248 61 37 0 chr1 228899512 228899675 -13764678 + MER30 DNA MER1_type 1 169 -61 758 295 216 17 chr1 228900210 228900729 -13763624 - L2 LINE L2 -641 2673 2052 1301 223 8 4 chr1 228900748 228901008 -13763345 - MER21B LTR ERV1 0 863 603 1205 161 55 0 chr1 228901002 228901201 -13763152 - MER21B LTR ERV1 -647 216 7 * 319 321 148 33 chr1 228901206 228901511 -13762842 - L2 LINE L2 -1269 2045 1706 286 239 39 52 chr1 228901591 228901746 -13762607 - L2 LINE L2 -1806 1508 1356 625 42 0 21 chr1 228901986 228902081 -13762272 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 252 143 0 0 chr1 228903132 228903174 -13761179 + (TTC)n Simple_repeat Simple_repeat 2 43 0 3679 167 70 18 chr1 228903866 228904549 -13759804 - MER72 LTR ERV1 0 722 4 371 309 113 54 chr1 228904630 228904983 -13759370 - MLT1L LTR MaLR -239 376 3 1149 233 113 81 chr1 228905117 228905674 -13758679 - LTR38 LTR ERV1 0 556 36 413 203 0 109 chr1 228905649 228905777 -13758576 - LTR38B LTR ERV1 -496 114 1 * 909 236 23 71 chr1 228906672 228906981 -13757372 - MLT1J LTR MaLR 0 511 218 5440 121 47 8 chr1 228906981 228907842 -13756511 + MER4D LTR ERV1 1 894 -9 365 252 79 58 chr1 228907860 228907971 -13756382 - MLT1J LTR MaLR -299 212 96 4291 123 15 52 chr1 228907971 228908688 -13755665 + LTR8 LTR ERV1 1 691 0 365 252 79 58 chr1 228908688 228908715 -13755638 - MLT1J LTR MaLR -415 96 71 240 179 71 0 chr1 228910375 228910431 -13753922 - MIR SINE MIR 0 262 203 230 295 32 21 chr1 228910529 228910624 -13753729 + LTR67 LTR ERVL 80 175 -382 * 458 321 131 26 chr1 228910565 228910908 -13753445 + MLT1J LTR MaLR 111 489 -22 8477 161 106 29 chr1 228910944 228912572 -13751781 - MER52A LTR ERV1 0 1755 3 1207 183 96 115 chr1 228912658 228913285 -13751068 - MER4C LTR ERV1 0 465 1 292 260 39 48 chr1 228914026 228914130 -13750223 + LTR48B LTR ERV1 1 103 -541 * 1329 211 159 43 chr1 228914116 228914556 -13749797 + MER39 LTR ERV1 217 707 0 180 0 0 0 chr1 228914586 228914606 -13749747 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1091 234 107 51 chr1 228915599 228916113 -13748240 + MLT1H LTR MaLR 4 546 -3 279 178 0 0 chr1 228916361 228916406 -13747947 + MLT1J LTR MaLR 1 45 -466 699 229 17 11 chr1 228916414 228916589 -13747764 + MIR SINE MIR 33 208 -54 1961 117 29 0 chr1 228916925 228917249 -13747104 - AluY SINE Alu 0 332 1 578 262 57 33 chr1 228917418 228917628 -13746725 + MLT1J LTR MaLR 290 504 -7 1914 180 67 80 chr1 228917682 228918193 -13746160 - MLT1D LTR MaLR 0 505 2 337 338 59 5 chr1 228918730 228918934 -13745419 + MIR SINE MIR 23 237 -25 193 365 39 0 chr1 228919109 228919213 -13745140 + MIR3 SINE MIR 85 192 -16 2113 106 3 55 chr1 228920301 228920446 -13743907 + AluSx SINE Alu 1 152 -160 2447 77 3 0 chr1 228920446 228920746 -13743607 + AluY SINE Alu 1 301 -10 2113 106 3 55 chr1 228920746 228920929 -13743424 + AluSx SINE Alu 152 312 0 237 65 0 0 chr1 228920935 228920966 -13743387 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 322 282 18 27 chr1 228921642 228921752 -13742601 + GA-rich Low_complexity Low_complexity 2 110 0 703 191 25 75 chr1 228921965 228922096 -13742257 - MER53 DNA DNA 0 189 70 2381 96 0 3 chr1 228922096 228922398 -13741955 - AluSx SINE Alu -11 301 1 703 191 25 75 chr1 228922398 228922465 -13741888 - MER53 DNA DNA -119 70 1 257 314 52 26 chr1 228924027 228924221 -13740132 + MIR SINE MIR 64 262 0 252 264 191 18 chr1 228924352 228924462 -13739891 + MER91A DNA MER1_type 68 196 0 1832 147 30 7 chr1 228924826 228925125 -13739228 - AluJo SINE Alu -4 308 3 192 77 0 0 chr1 228925307 228925333 -13739020 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 269 307 11 11 chr1 228926359 228926447 -13737906 + MLT1G1 LTR MaLR 265 352 -243 189 279 0 16 chr1 228926629 228926690 -13737663 - L2 LINE L2 -4 3309 3250 2509 286 124 64 chr1 228927306 228930115 -13734238 - L2 LINE L2 -1 3312 333 579 176 0 42 chr1 228930120 228930239 -13734114 - L1MA6 LINE L1 -184 6116 6003 847 134 40 0 chr1 228930239 228930386 -13733967 + L1MA6 LINE L1 6146 6300 0 397 339 0 64 chr1 228930401 228930456 -13733897 - L2 LINE L2 -2963 351 294 2499 48 10 35 chr1 228930456 228930766 -13733587 + AluY SINE Alu 1 302 -9 397 339 0 64 chr1 228930766 228931008 -13733345 - L2 LINE L2 -3020 294 73 2300 159 26 19 chr1 228932609 228933031 -13731322 - MSTB1 LTR MaLR -4 428 4 2177 128 40 0 chr1 228933228 228933581 -13730772 + L1MB3 LINE L1 5805 6171 -12 609 122 41 0 chr1 228934555 228934653 -13729700 - MSTB1 LTR MaLR 0 432 331 467 167 24 12 chr1 228935852 228935936 -13728417 - MER81 DNA DNA -29 85 1 291 244 67 11 chr1 228936187 228936277 -13728076 - Charlie8 DNA MER1_type -1876 541 447 360 288 38 96 chr1 228936449 228936689 -13727664 - Charlie8 DNA MER1_type -2182 235 10 304 230 47 20 chr1 228938415 228938563 -13725790 + (CA)n Simple_repeat Simple_repeat 1 152 0 4379 138 99 107 chr1 228938611 228940002 -13724351 + pTR5 LTR ERV1 738 2438 0 593 206 30 23 chr1 228940003 228940134 -13724219 - MLT1E3 LTR MaLR -403 221 90 386 265 114 8 chr1 228940153 228940285 -13724068 - MLT2F LTR ERVL -517 146 1 378 0 0 0 chr1 228940293 228940335 -13724018 + (CA)n Simple_repeat Simple_repeat 2 43 0 2353 91 0 0 chr1 228940742 228941038 -13723315 + AluSg1 SINE Alu 1 296 -13 208 340 43 11 chr1 228941788 228941882 -13722471 - MER5A DNA MER1_type -8 181 85 242 81 0 0 chr1 228941897 228941934 -13722419 - FLAM_C SINE Alu 0 160 124 1668 76 43 0 chr1 228941934 228942145 -13722208 - AluSc SINE Alu -89 220 1 23 33 0 0 chr1 228942257 228942287 -13722066 + AT_rich Low_complexity Low_complexity 1 30 0 469 351 113 30 chr1 228942516 228943057 -13721296 + L1MC4a LINE L1 4745 5330 -816 1237 145 77 5 chr1 228943306 228943513 -13720840 + MER49 LTR ERV1 5 226 -697 726 183 52 13 chr1 228943518 228943671 -13720682 + MER49 LTR ERV1 765 923 0 328 320 76 10 chr1 228943739 228943936 -13720417 + L1MC4a LINE L1 5731 5940 -1868 183 204 0 0 chr1 228943936 228943980 -13720373 + GA-rich Low_complexity Low_complexity 1 44 0 245 286 24 12 chr1 228944066 228944150 -13720203 + L3 LINE CR1 1088 1172 -405 330 289 21 0 chr1 228944979 228945076 -13719277 + MIR SINE MIR 52 150 -112 343 288 23 8 chr1 228945483 228945615 -13718738 - L1ME4a LINE L1 0 6121 5988 240 215 21 32 chr1 228945629 228945732 -13718621 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 2243 120 0 0 chr1 228946087 228946388 -13717965 - AluSg SINE Alu -8 302 2 829 120 48 0 chr1 228947440 228947565 -13716788 - FLAM_C SINE Alu -12 131 1 211 316 0 13 chr1 228948727 228948806 -13715547 + MIR SINE MIR 150 227 -35 703 96 0 0 chr1 228950659 228950753 -13713600 + AluSg/x SINE Alu 203 296 -14 200 293 49 0 chr1 228950754 228950836 -13713517 + MER5A DNA MER1_type 72 157 -32 2399 94 3 0 chr1 228951928 228952237 -13712116 - AluSx SINE Alu 0 312 3 504 236 140 22 chr1 228952473 228952651 -13711702 + MLT1J LTR MaLR 3 201 -310 1673 158 4 11 chr1 228953195 228953455 -13710898 - AluJo SINE Alu -52 260 3 253 268 28 0 chr1 228954973 228955044 -13709309 + MIR SINE MIR 72 144 -118 2774 279 115 21 chr1 228955255 228956614 -13707739 - L2 LINE L2 -58 3255 1773 370 186 32 41 chr1 228956618 228956726 -13707627 - L1MEc LINE L1 -1967 4248 4141 302 283 18 36 chr1 228956712 228956878 -13707475 - L1MEc LINE L1 -2925 3290 3128 * 662 196 0 75 chr1 228956881 228957054 -13707299 - MER58C DNA MER1_type 0 215 56 3277 285 51 53 chr1 228957070 228958082 -13706271 - L1MEc LINE L1 -3084 3131 2119 2317 97 0 3 chr1 228958082 228958380 -13705973 - AluSg SINE Alu -13 297 1 3277 285 51 53 chr1 228958380 228960478 -13703875 - L1MEc LINE L1 -4096 2119 44 21 0 0 0 chr1 228961028 228961049 -13703304 + AT_rich Low_complexity Low_complexity 1 21 0 2318 78 3 3 chr1 228961330 228961645 -13702708 - AluSp SINE Alu 0 315 1 229 261 0 15 chr1 228961863 228961928 -13702425 + (TG)n Simple_repeat Simple_repeat 1 64 0 1839 168 24 38 chr1 228963089 228963174 -13701179 + MLT1A1 LTR MaLR 1 86 -279 2377 98 0 0 chr1 228963174 228963480 -13700873 + AluSc SINE Alu 1 306 -3 1839 168 24 38 chr1 228963480 228963764 -13700589 + MLT1A1 LTR MaLR 86 365 0 2374 91 3 0 chr1 228965591 228965887 -13698466 + AluSx SINE Alu 1 297 -15 1131 204 126 7 chr1 228966573 228966745 -13697608 - AluJo SINE Alu -1 301 84 213 39 0 0 chr1 228966745 228966771 -13697582 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1131 204 126 7 chr1 228966771 228966867 -13697486 - AluJo SINE Alu -218 84 1 409 318 41 23 chr1 228968538 228968758 -13695595 + MIR SINE MIR 25 248 -14 271 286 89 18 chr1 228968779 228968891 -13695462 - L2 LINE L2 -8 3264 3145 1611 270 113 38 chr1 228969745 228970529 -13693824 + L2 LINE L2 418 1260 -2054 311 133 17 17 chr1 228970530 228970542 -13693811 - MER46A DNA MER2_type -80 156 145 1267 162 0 0 chr1 228970542 228970733 -13693620 + Tigger4(Zombi) DNA MER2_type 1 191 -2540 * 4257 145 5 1 chr1 228970732 228971396 -13692957 + Tigger4(Zombi) DNA MER2_type 2066 2731 0 182 235 71 35 chr1 228971419 228971504 -13692849 + L2 LINE L2 1431 1518 -1796 233 261 29 0 chr1 228972222 228972291 -13692062 + MIR SINE MIR 62 132 -76 7860 22 0 7 chr1 228972655 228973699 -13690654 - L1PA3 LINE L1 -7 6148 5108 2355 106 0 0 chr1 228973909 228974211 -13690142 - AluSq SINE Alu -11 302 1 992 281 91 47 chr1 228974380 228974785 -13689568 + MLT1J1 LTR MaLR 21 443 -3 1105 281 62 43 chr1 228974820 228975287 -13689066 + LTR67 LTR ERVL 82 557 0 533 277 106 37 chr1 228976039 228976360 -13687993 + MLT1H LTR MaLR 3 345 -204 12404 188 31 16 chr1 228976773 228977417 -13686936 + L1PA16 LINE L1 2312 2945 -3221 2111 132 3 0 chr1 228977417 228977713 -13686640 + AluSx SINE Alu 1 297 -15 12404 188 31 16 chr1 228977713 228979105 -13685248 + L1PA16 LINE L1 2945 4315 -1851 225 0 0 0 chr1 228979105 228979130 -13685223 + (CA)n Simple_repeat Simple_repeat 2 26 0 12404 188 31 16 chr1 228979130 228979266 -13685087 + L1PA16 LINE L1 4315 4447 -1719 1820 54 0 0 chr1 228979266 228979488 -13684865 + L1PA7 LINE L1 5928 6149 -5 12404 188 31 16 chr1 228979488 228981098 -13683255 + L1PA16 LINE L1 4447 6157 -9 266 359 0 0 chr1 228981924 228982002 -13682351 + L2 LINE L2 3234 3311 -2 463 324 123 32 chr1 228982064 228982873 -13681480 + L2 LINE L2 2384 3313 0 346 270 43 17 chr1 228983019 228983134 -13681219 - MIR SINE MIR -50 212 95 22 99 0 0 chr1 228983996 228984067 -13680286 + AT_rich Low_complexity Low_complexity 1 71 0 367 209 22 11 chr1 228984111 228984202 -13680151 - L1ME1 LINE L1 -5 6161 6070 826 236 99 20 chr1 228984203 228984587 -13679766 - L1ME1 LINE L1 -291 5875 5441 1759 148 65 7 chr1 228986830 228987108 -13677245 + AluSx SINE Alu 1 294 -18 269 149 15 45 chr1 228987684 228987751 -13676602 + MER116 DNA Mariner 14 78 -2 2295 111 3 0 chr1 228987898 228988205 -13676148 - AluSc SINE Alu -1 308 1 393 270 20 101 chr1 228988215 228988511 -13675842 + L2 LINE L2 2841 3112 -160 945 251 24 16 chr1 228988547 228988794 -13675559 - MIR SINE MIR 0 262 14 275 119 0 0 chr1 228988882 228988924 -13675429 + L2 LINE L2 3268 3309 -4 2503 81 0 0 chr1 228990994 228991301 -13673052 - AluSx SINE Alu -5 307 1 340 333 71 42 chr1 228991433 228991929 -13672424 - L1MEd LINE L1 -3403 2726 2217 287 291 0 0 chr1 228992074 228992191 -13672162 + L1M4 LINE L1 3336 3452 -2694 2033 121 4 4 chr1 228992196 228992477 -13671876 + AluSx SINE Alu 1 281 -31 252 296 14 0 chr1 228992594 228992665 -13671688 + GA-rich Low_complexity Low_complexity 2 73 0 1265 282 105 60 chr1 228992891 228994066 -13670287 - L1MEd LINE L1 -4886 1233 6 27 73 0 0 chr1 228994218 228994273 -13670080 + AT_rich Low_complexity Low_complexity 1 55 0 1053 266 99 6 chr1 228994705 228995070 -13669283 + L1MD1 LINE L1 26 424 -6116 2303 216 204 66 chr1 228995075 228995952 -13668401 + MER52A LTR ERV1 663 1660 -95 5333 187 139 58 chr1 228995989 228996724 -13667629 + L1MD1 LINE L1 587 1260 -5280 2041 148 3 0 chr1 228996724 228997015 -13667338 - AluSx SINE Alu -20 292 1 5333 187 139 58 chr1 228997015 228998186 -13666167 + L1MD1 LINE L1 1260 2649 -3891 4315 251 35 40 chr1 228998218 228999997 -13664356 + L1MD1 LINE L1 2637 4407 -2133 2440 65 3 3 chr1 228999997 229000303 -13664050 + AluY SINE Alu 1 306 -5 4315 251 35 40 chr1 229000303 229000390 -13663963 + L1MD1 LINE L1 4407 4493 -2047 5857 97 44 6 chr1 229000406 229001771 -13662582 - L1PA13 LINE L1 -8 6155 4748 3400 224 55 27 chr1 229001792 229002716 -13661637 - L1M4 LINE L1 -2146 4000 3103 756 174 8 0 chr1 229002716 229002837 -13661516 - FLAM_A SINE Alu -10 123 2 3400 224 55 27 chr1 229002837 229002848 -13661505 - L1M4 LINE L1 -3043 3103 3094 1324 223 3 38 chr1 229002848 229003164 -13661189 - AluJo SINE Alu 0 306 1 3400 224 55 27 chr1 229003164 229003511 -13660842 - L1M4 LINE L1 -3052 3094 2680 3869 173 36 74 chr1 229003515 229003555 -13660798 + L1MD1 LINE L1 5552 5592 -1044 2840 6 0 3 chr1 229003555 229003866 -13660487 + AluYa5 SINE Alu 1 310 -1 3869 173 36 74 chr1 229003866 229004939 -13659414 + L1MD1 LINE L1 5592 6615 -21 387 0 0 0 chr1 229004939 229004982 -13659371 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr1 229006955 229006986 -13657367 + AT_rich Low_complexity Low_complexity 1 31 0 2162 113 0 16 chr1 229008485 229008794 -13655559 + AluSg SINE Alu 1 304 -6 657 284 84 31 chr1 229008840 229009160 -13655193 - MLT1K LTR MaLR -8 580 244 387 89 0 0 chr1 229009625 229009681 -13654672 + (CA)n Simple_repeat Simple_repeat 1 56 0 1701 177 13 32 chr1 229009684 229010056 -13654297 - MLT1A1 LTR MaLR 0 365 1 2357 110 0 0 chr1 229010309 229010617 -13653736 + AluSg1 SINE Alu 1 308 -1 300 27 0 0 chr1 229011227 229011264 -13653089 + (TG)n Simple_repeat Simple_repeat 2 38 0 513 291 24 18 chr1 229011303 229011468 -13652885 + MIR SINE MIR 28 193 -69 216 286 18 0 chr1 229011519 229011575 -13652778 + (CTA)n Simple_repeat Simple_repeat 1 57 0 297 337 79 20 chr1 229012129 229012331 -13652022 + L3 LINE CR1 708 921 -656 208 287 193 28 chr1 229012430 229012751 -13651602 + L3 LINE CR1 1103 1476 -101 252 230 85 5 chr1 229013346 229013447 -13650906 - MIR SINE MIR -58 150 38 2268 105 3 0 chr1 229014295 229014590 -13649763 + AluSg SINE Alu 1 296 -14 477 302 47 56 chr1 229014715 229015036 -13649317 + MLT1F LTR MaLR 5 322 -273 493 224 0 66 chr1 229015105 229015257 -13649096 + MLT1F LTR MaLR 394 535 -7 247 291 172 26 chr1 229015476 229015529 -13648824 - L2 LINE L2 -456 2858 2814 1039 167 5 59 chr1 229015529 229015618 -13648735 - MER3 DNA MER1_type 0 209 117 2295 61 0 47 chr1 229015618 229015951 -13648402 + AluY SINE Alu 1 319 0 1039 167 5 59 chr1 229015951 229016081 -13648272 - MER3 DNA MER1_type -92 117 1 247 291 172 26 chr1 229016081 229016254 -13648099 - L2 LINE L2 -500 2814 2599 553 253 166 15 chr1 229018093 229018295 -13646058 - MIR SINE MIR -22 240 3 1070 166 0 6 chr1 229020817 229020992 -13643361 + AluJo SINE Alu 126 299 -13 336 302 218 18 chr1 229021036 229021261 -13643092 - L3b LINE CR1 -115 1468 1199 2276 106 0 3 chr1 229022029 229022341 -13642012 - AluY SINE Alu 0 311 1 454 276 21 73 chr1 229024037 229024229 -13640124 - MER5A DNA MER1_type -2 187 6 21 0 0 0 chr1 229025988 229026009 -13638344 + AT_rich Low_complexity Low_complexity 1 21 0 196 228 18 18 chr1 229026057 229026114 -13638239 + L3b LINE CR1 1156 1212 -371 256 305 0 30 chr1 229026491 229026622 -13637731 + GA-rich Low_complexity Low_complexity 4 130 0 459 231 15 53 chr1 229027995 229028199 -13636154 + MIR SINE MIR 18 254 -8 542 273 19 19 chr1 229028263 229028424 -13635929 - MIR3 SINE MIR -46 162 2 2337 96 0 16 chr1 229029373 229029687 -13634666 + AluSx SINE Alu 1 309 -3 306 354 74 49 chr1 229031072 229031315 -13633038 + L1MEd LINE L1 777 1025 -5505 3815 153 27 12 chr1 229031342 229032366 -13631987 - L1MA4 LINE L1 -359 5941 4907 5812 108 17 13 chr1 229032379 229033216 -13631137 - L1MA2 LINE L1 0 6304 5465 301 188 0 0 chr1 229033216 229033264 -13631089 - MER5A DNA MER1_type -141 48 1 684 282 78 49 chr1 229033346 229034300 -13630053 + L1MEd LINE L1 2443 3427 -3113 392 312 75 34 chr1 229034368 229034660 -13629693 + L1MEd LINE L1 4099 4402 -2138 2076 113 0 0 chr1 229035590 229035874 -13628479 - AluY SINE Alu -7 304 21 243 0 0 0 chr1 229036429 229036456 -13627897 + (CA)n Simple_repeat Simple_repeat 2 28 0 834 166 22 7 chr1 229036495 229036661 -13627692 + AluJb SINE Alu 146 313 0 326 288 74 95 chr1 229036832 229036992 -13627361 + L1MCa LINE L1 145 307 -6257 4237 109 2 0 chr1 229036992 229037543 -13626810 + MER41A LTR ERV1 3 554 0 326 288 74 95 chr1 229037543 229037719 -13626634 + L1MCa LINE L1 307 474 -6090 2199 250 99 46 chr1 229038128 229039075 -13625278 + L1MCa LINE L1 535 1658 -4906 1790 118 96 11 chr1 229039075 229039355 -13624998 + AluSx SINE Alu 1 304 -8 2199 250 99 46 chr1 229039355 229040049 -13624304 + L1MCa LINE L1 1658 2314 -4250 52 0 0 0 chr1 229040049 229040101 -13624252 + AT_rich Low_complexity Low_complexity 1 52 0 569 315 80 4 chr1 229040372 229040610 -13623743 + MIR SINE MIR 4 259 -3 1778 173 20 3 chr1 229040645 229040946 -13623407 - AluJo SINE Alu -6 306 1 810 296 80 61 chr1 229043192 229043773 -13620580 - L2 LINE L2 -20 3293 2706 1760 246 47 57 chr1 229043775 229044943 -13619410 + L1MCa LINE L1 1 1064 -4981 8040 225 58 47 chr1 229044946 229046592 -13617761 + L1MCa LINE L1 2434 4061 -2503 1838 82 112 4 chr1 229046592 229046860 -13617493 + AluYa8 SINE Alu 1 297 -13 8040 225 58 47 chr1 229046860 229046971 -13617382 + L1MCa LINE L1 4061 4169 -2395 2786 7 0 0 chr1 229046971 229047269 -13617084 + AluYa5 SINE Alu 1 298 -13 8040 225 58 47 chr1 229047269 229048518 -13615835 + L1MCa LINE L1 4169 5466 -1098 416 244 17 9 chr1 229048524 229048639 -13615714 + AluY SINE Alu 7 122 -189 484 330 138 11 chr1 229048750 229049032 -13615321 - L2 LINE L2 -798 2516 2199 2880 3 0 0 chr1 229049504 229049809 -13614544 - AluYa5 SINE Alu -6 305 1 1013 196 27 27 chr1 229049813 229050037 -13614316 - MIR SINE MIR -7 255 32 453 312 54 57 chr1 229050251 229050549 -13613804 + L2 LINE L2 3016 3312 -1 295 267 0 12 chr1 229050634 229050720 -13613633 + L1M4 LINE L1 2683 2767 -3379 224 160 0 20 chr1 229050732 229050782 -13613571 + (TAA)n Simple_repeat Simple_repeat 3 51 0 198 135 19 77 chr1 229050937 229051041 -13613312 + (CTAAA)n Simple_repeat Simple_repeat 3 100 0 874 251 0 0 chr1 229051235 229051402 -13612951 + FAM SINE Alu 1 167 -8 657 243 29 14 chr1 229051463 229051673 -13612680 + L1MCa LINE L1 2347 2559 -4186 512 304 0 7 chr1 229051724 229051862 -13612491 + HAL1 LINE L1 751 887 -1620 528 160 60 20 chr1 229051891 229051991 -13612362 + FLAM_A SINE Alu 32 135 -7 3385 251 62 42 chr1 229051993 229052959 -13611394 + HAL1 LINE L1 940 1942 -565 207 0 0 0 chr1 229052959 229052982 -13611371 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3385 251 62 42 chr1 229052982 229053362 -13610991 + HAL1 LINE L1 1942 2313 -194 1399 176 141 22 chr1 229053374 229053693 -13610660 + MLT1A1 LTR MaLR 1 357 -8 302 241 41 77 chr1 229053718 229053888 -13610465 + HAL1 LINE L1 2344 2507 0 219 360 56 16 chr1 229054283 229054408 -13609945 - L2 LINE L2 -4 3268 3139 214 209 31 23 chr1 229054645 229054724 -13609629 + GA-rich Low_complexity Low_complexity 1 130 0 2286 117 0 0 chr1 229055860 229056167 -13608186 + AluSq SINE Alu 1 307 -6 255 265 10 88 chr1 229057024 229057126 -13607227 - MIR SINE MIR -133 129 36 2210 82 11 0 chr1 229057165 229057444 -13606909 + AluSp SINE Alu 1 282 -31 201 39 0 0 chr1 229057447 229057473 -13606880 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2273 122 0 0 chr1 229058116 229058428 -13605925 - AluSx SINE Alu 0 312 1 24 32 0 0 chr1 229058534 229058565 -13605788 + AT_rich Low_complexity Low_complexity 1 31 0 513 258 15 23 chr1 229058934 229059066 -13605287 + MIR SINE MIR 16 146 -62 36 23 0 0 chr1 229059369 229059412 -13604941 + AT_rich Low_complexity Low_complexity 1 43 0 2230 123 3 0 chr1 229061784 229062086 -13602267 - AluSp SINE Alu -9 304 2 291 294 26 10 chr1 229062176 229062273 -13602080 + MIR SINE MIR 50 148 -63 1324 292 45 71 chr1 229062303 229063405 -13600948 - L2 LINE L2 -1 3312 2238 2234 98 7 0 chr1 229063405 229063700 -13600653 - AluSp SINE Alu -16 297 1 1324 292 45 71 chr1 229063700 229063736 -13600617 - L2 LINE L2 -1075 2238 2203 760 233 143 25 chr1 229063780 229064102 -13600251 - L2 LINE L2 -43 3270 2911 396 269 71 80 chr1 229064659 229064742 -13599611 + MIR SINE MIR 27 109 -153 2460 96 0 0 chr1 229064742 229065054 -13599299 - AluSx SINE Alu 0 312 1 396 269 71 80 chr1 229065054 229065208 -13599145 + MIR SINE MIR 109 262 0 378 108 72 0 chr1 229065330 229065413 -13598940 - Charlie5 DNA MER1_type -129 2483 2395 869 122 0 20 chr1 229065413 229065561 -13598792 - L1MB3 LINE L1 -1 6182 6038 494 169 0 12 chr1 229065561 229065644 -13598709 - U6 snRNA snRNA -4 103 22 453 255 25 38 chr1 229066209 229066532 -13597821 + MLT1I LTR MaLR 43 409 0 226 0 0 56 chr1 229066685 229066721 -13597632 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2040 104 30 0 chr1 229066722 229066991 -13597362 - AluSg SINE Alu -33 277 1 868 136 0 0 chr1 229066993 229067125 -13597228 - AluSg SINE Alu -178 132 1 2214 80 0 4 chr1 229067255 229067530 -13596823 + AluY SINE Alu 22 295 -16 182 298 35 0 chr1 229068163 229068220 -13596133 + MIR SINE MIR 71 129 -133 258 226 90 98 chr1 229068240 229068373 -13595980 - L2 LINE L2 -24 3248 3117 317 273 180 23 chr1 229070418 229070546 -13593807 - L2 LINE L2 0 3272 3125 2333 97 0 3 chr1 229070655 229070953 -13593400 + AluSc SINE Alu 1 297 -12 2018 179 126 90 chr1 229071278 229072003 -13592350 - LTR1B LTR ERV1 -75 751 1 200 333 83 38 chr1 229072924 229073003 -13591350 + L2 LINE L2 3169 3258 -55 1099 187 46 121 chr1 229073003 229073506 -13590847 + MER4C LTR ERV1 1 465 0 200 333 83 38 chr1 229073506 229073558 -13590795 + L2 LINE L2 3258 3306 -7 317 267 20 0 chr1 229073800 229073901 -13590452 + (TA)n Simple_repeat Simple_repeat 1 103 0 243 257 118 81 chr1 229074267 229074403 -13589950 + MIR3 SINE MIR 1 141 -67 30 59 0 0 chr1 229074518 229074569 -13589784 + AT_rich Low_complexity Low_complexity 1 51 0 394 33 33 0 chr1 229076601 229076661 -13587692 + (CA)n Simple_repeat Simple_repeat 2 63 0 199 256 256 23 chr1 229076678 229076764 -13587589 - MIR SINE MIR -73 135 30 1770 184 3 52 chr1 229077633 229077923 -13586430 + MER2 DNA MER2_type 1 273 -72 802 189 8 0 chr1 229077923 229078055 -13586298 - FLAM_C SINE Alu 0 133 1 1770 184 3 52 chr1 229078055 229078112 -13586241 + MER2 DNA MER2_type 273 331 -14 1316 177 130 0 chr1 229078651 229078905 -13585448 + AluJo SINE Alu 11 297 -15 359 250 0 0 chr1 229080061 229080129 -13584224 - L2 LINE L2 0 3313 3246 352 219 143 19 chr1 229080615 229080720 -13583633 - MIR SINE MIR -117 145 28 301 275 109 36 chr1 229081228 229081366 -13582987 - MIR SINE MIR -15 247 100 349 265 88 27 chr1 229081383 229081530 -13582823 + L2 LINE L2 2301 2456 -858 265 294 157 0 chr1 229081544 229081646 -13582707 - L2 LINE L2 -1 3271 3154 181 259 9 121 chr1 229082273 229082389 -13581964 + L2 LINE L2 3097 3199 -73 216 97 0 0 chr1 229082462 229082493 -13581860 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 260 307 201 22 chr1 229082904 229083083 -13581270 - L3 LINE CR1 -77 1500 1290 624 317 162 24 chr1 229083133 229083675 -13580678 - L3 LINE CR1 -521 1056 440 184 228 13 25 chr1 229084635 229084714 -13579639 + (TATG)n Simple_repeat Simple_repeat 2 79 0 2215 85 0 11 chr1 229085151 229085458 -13578895 - AluY SINE Alu 0 307 4 400 246 51 34 chr1 229085750 229085868 -13578485 + L2 LINE L2 3192 3311 -2 1607 181 14 0 chr1 229086761 229087048 -13577305 + AluJo SINE Alu 5 295 -17 232 310 23 0 chr1 229087161 229087248 -13577105 - MIR SINE MIR -56 206 118 235 254 32 0 chr1 229087373 229087436 -13576917 + GA-rich Low_complexity Low_complexity 2 66 0 1407 145 102 0 chr1 229088814 229089049 -13575304 + AluJo SINE Alu 1 259 -53 226 127 16 63 chr1 229089067 229089130 -13575223 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 2448 146 41 25 chr1 229089735 229090173 -13574180 - MER65A LTR ERV1 0 445 1 440 138 0 0 chr1 229090174 229090232 -13574121 + MER58A DNA MER1_type 18 75 -32 287 83 0 0 chr1 229090231 229090267 -13574086 + U2 snRNA snRNA 1 36 -152 * 908 201 0 6 chr1 229090265 229090429 -13573924 + MER58A DNA MER1_type 61 223 -1 23 54 0 0 chr1 229090714 229090751 -13573602 + AT_rich Low_complexity Low_complexity 1 37 0 1255 105 0 41 chr1 229092418 229092589 -13571764 + U1 snRNA snRNA 1 164 -1 1695 207 169 18 chr1 229092603 229093053 -13571300 + MLT1F1 LTR MaLR 50 567 0 232 357 45 19 chr1 229093496 229093650 -13570703 + L3 LINE CR1 580 737 -840 2315 82 3 3 chr1 229094474 229094768 -13569585 + AluSq SINE Alu 1 294 -19 1753 184 0 16 chr1 229095382 229095691 -13568662 - AluJo SINE Alu -8 304 1 4790 146 66 21 chr1 229095984 229096913 -13567440 + L1MB3 LINE L1 5174 6138 -45 2153 95 20 10 chr1 229096913 229097208 -13567145 + AluSg SINE Alu 1 298 -12 4790 146 66 21 chr1 229097208 229097247 -13567106 + L1MB3 LINE L1 6138 6174 -9 4144 76 11 12 chr1 229097468 229098050 -13566303 + LTR10C LTR ERV1 1 546 -1 313 348 135 26 chr1 229098180 229098447 -13565906 - L2 LINE L2 -8 3264 2969 240 215 21 32 chr1 229099062 229099165 -13565188 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 2319 96 7 0 chr1 229099520 229099822 -13564531 - AluSx SINE Alu -8 304 1 21 0 0 0 chr1 229099956 229099977 -13564376 + AT_rich Low_complexity Low_complexity 1 21 0 2226 53 53 30 chr1 229099977 229100280 -13564073 - AluY SINE Alu -1 310 1 301 297 70 73 chr1 229100654 229100940 -13563413 + L1ME LINE L1 4750 5034 -1112 1992 98 25 51 chr1 229100974 229101289 -13563064 - AluSx SINE Alu -5 307 1 343 257 246 32 chr1 229101499 229101845 -13562508 - MLT1J LTR MaLR -59 452 33 1594 195 3 13 chr1 229101941 229102248 -13562105 + AluJo SINE Alu 9 312 0 265 268 28 0 chr1 229102374 229102445 -13561908 + L1ME LINE L1 5545 5617 -504 599 276 65 17 chr1 229102527 229102759 -13561594 - MIR SINE MIR 0 262 20 378 42 0 0 chr1 229102962 229103010 -13561343 + (TG)n Simple_repeat Simple_repeat 2 49 0 2343 101 3 0 chr1 229103272 229103578 -13560775 + AluY SINE Alu 1 307 -4 192 77 0 0 chr1 229103674 229103700 -13560653 + (TC)n Simple_repeat Simple_repeat 2 27 0 2739 140 30 23 chr1 229103723 229104152 -13560201 - Tigger2a DNA MER2_type -2 432 1 249 197 0 0 chr1 229104155 229104216 -13560137 + (CA)n Simple_repeat Simple_repeat 2 62 0 27 49 0 0 chr1 229104343 229104384 -13559969 + AT_rich Low_complexity Low_complexity 1 41 0 607 236 0 8 chr1 229104417 229104540 -13559813 - L2 LINE L2 -5 3308 3187 4646 137 79 13 chr1 229104565 229105340 -13559013 - LTR1B LTR ERV1 0 826 1 1686 83 0 9 chr1 229106325 229106543 -13557810 - AluSq SINE Alu -15 298 83 684 289 20 15 chr1 229106972 229107169 -13557184 + MIR SINE MIR 8 205 -57 582 269 41 66 chr1 229107539 229107736 -13556617 + MIR3 SINE MIR 13 204 -4 183 42 0 0 chr1 229108927 229108951 -13555402 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2029 103 0 34 chr1 229110280 229110597 -13553756 - AluSx SINE Alu 0 307 1 990 135 0 0 chr1 229112538 229112671 -13551682 - FLAM_C SINE Alu 0 133 1 219 146 0 0 chr1 229114151 229114192 -13550161 + (TCC)n Simple_repeat Simple_repeat 1 41 0 1647 207 47 51 chr1 229114838 229115306 -13549047 + MER31B LTR ERV1 1 466 0 193 291 0 0 chr1 229115484 229115539 -13548814 - L2 LINE L2 -495 2819 2765 195 285 266 30 chr1 229115633 229115896 -13548457 - L2 LINE L2 -665 2649 2325 2290 91 0 13 chr1 229116083 229116381 -13547972 + AluSc SINE Alu 1 294 -15 726 266 100 21 chr1 229116854 229117095 -13547258 + MIR SINE MIR 3 262 0 331 269 57 50 chr1 229117346 229117487 -13546866 - L2 LINE L2 -945 2369 2228 1319 120 60 0 chr1 229118397 229118614 -13545739 + L1PA16 LINE L1 5888 6117 -49 2293 105 10 3 chr1 229119773 229120079 -13544274 + AluSg SINE Alu 1 308 -2 214 365 19 28 chr1 229120086 229120193 -13544160 + MIR SINE MIR 3 108 -154 474 310 7 14 chr1 229120243 229120388 -13543965 - MER5A DNA MER1_type -43 146 3 2165 187 125 4 chr1 229121004 229121459 -13542894 + LTR54 LTR ERV1 1 510 0 344 289 118 51 chr1 229121640 229121843 -13542510 - MIR SINE MIR -14 248 34 2296 118 0 0 chr1 229122105 229122418 -13541935 - AluSq SINE Alu 0 313 1 308 290 86 45 chr1 229122419 229122606 -13541747 + L1MC4 LINE L1 7502 7680 -362 4595 166 21 72 chr1 229122606 229123557 -13540796 - MER4D LTR ERV1 0 903 1 308 290 86 45 chr1 229123557 229123780 -13540573 + L1MC4 LINE L1 7680 8016 -26 2077 133 3 0 chr1 229124326 229124626 -13539727 - AluSx SINE Alu -11 301 1 679 218 0 7 chr1 229126017 229126159 -13538194 + L1M3 LINE L1 5447 5587 -593 278 215 81 2 chr1 229126162 229126253 -13538100 + MLT1C LTR MaLR 5 100 -290 2065 99 27 14 chr1 229127092 229127384 -13536969 - AluSx SINE Alu -16 296 1 2135 94 7 14 chr1 229127457 229127774 -13536579 - AluSq SINE Alu 0 315 1 24 32 0 0 chr1 229129676 229129707 -13534646 + AT_rich Low_complexity Low_complexity 1 31 0 1865 183 72 17 chr1 229133372 229133847 -13530506 - Charlie1 DNA MER1_type -1 2760 2260 36 53 0 0 chr1 229134599 229134656 -13529697 + AT_rich Low_complexity Low_complexity 1 57 0 1547 154 143 0 chr1 229134741 229135014 -13529339 + AluJo SINE Alu 1 312 0 1171 217 0 0 chr1 229135414 229135603 -13528750 + MER5A DNA MER1_type 1 189 0 2160 177 17 3 chr1 229135621 229135972 -13528381 + MSTC LTR MaLR 1 356 -72 325 260 297 10 chr1 229136006 229136198 -13528155 + MIR SINE MIR 15 261 -1 576 278 63 12 chr1 229136418 229136713 -13527640 - LTR16A LTR ERVL 0 450 93 222 254 104 0 chr1 229137139 229137206 -13527147 + L3 LINE CR1 1153 1226 -351 248 294 93 51 chr1 229137824 229138038 -13526315 + MLT1K LTR MaLR 138 360 -228 2269 68 0 55 chr1 229138258 229138567 -13525786 + AluSp SINE Alu 3 294 -19 7823 44 0 0 chr1 229138568 229139560 -13524793 + L1PA5 LINE L1 5155 6146 -8 187 394 81 10 chr1 229140758 229140857 -13523496 + MIR3 SINE MIR 4 109 -99 2386 77 0 7 chr1 229140985 229141284 -13523069 + AluY SINE Alu 1 297 -14 502 206 15 46 chr1 229141325 229141456 -13522897 + AluSg SINE Alu 2 128 -182 968 156 56 0 chr1 229142830 229142990 -13521363 - AluJb SINE Alu -10 302 134 2015 112 10 20 chr1 229142990 229143295 -13521058 - AluSx SINE Alu -8 304 3 1565 204 0 7 chr1 229143297 229143591 -13520762 - AluJb SINE Alu -20 292 1 218 225 0 14 chr1 229144410 229144481 -13519872 + (CA)n Simple_repeat Simple_repeat 1 70 0 727 216 105 0 chr1 229144977 229145148 -13519205 + MER53 DNA DNA 1 189 0 506 240 34 20 chr1 229145704 229145850 -13518503 - MER5B DNA MER1_type -3 175 28 562 187 22 0 chr1 229146656 229146790 -13517563 + GA-rich Low_complexity Low_complexity 4 140 0 2261 218 52 57 chr1 229147510 229147550 -13516803 - L1M4b LINE L1 -5967 892 853 2191 109 0 7 chr1 229147550 229147861 -13516492 - AluSx SINE Alu 0 309 1 2261 218 52 57 chr1 229147861 229148634 -13515719 - L1M4b LINE L1 -6006 853 11 606 288 83 9 chr1 229148691 229148920 -13515433 + MIR SINE MIR 17 262 0 2156 108 7 0 chr1 229149367 229149654 -13514699 - AluSg SINE Alu -19 291 3 2869 206 53 22 chr1 229149701 229150376 -13513977 + L1ME2 LINE L1 5455 6150 -14 457 275 0 0 chr1 229153232 229153323 -13511030 + L2 LINE L2 3182 3272 0 239 320 72 10 chr1 229153783 229153880 -13510473 - L2 LINE L2 -20 3252 3150 867 251 36 61 chr1 229154022 229154352 -13510001 + L1M4 LINE L1 2 323 -6219 * 2616 260 19 18 chr1 229154345 229155144 -13509209 + L1M4 LINE L1 3932 4731 -1913 293 195 0 24 chr1 229155144 229155226 -13509127 + (CATA)n Simple_repeat Simple_repeat 3 82 0 3807 236 16 13 chr1 229155229 229156108 -13508245 + L1M4 LINE L1 4735 5619 -1025 2624 48 0 3 chr1 229156108 229156417 -13507936 + AluY SINE Alu 1 308 -3 3807 236 16 13 chr1 229156417 229156527 -13507826 + L1M4 LINE L1 5619 5727 -917 1259 254 100 18 chr1 229156526 229156627 -13507726 - L1MCa LINE L1 -4910 2031 1940 * 195 42 0 0 chr1 229156627 229156651 -13507702 + (TG)n Simple_repeat Simple_repeat 2 25 0 1259 254 100 18 chr1 229156651 229157160 -13507193 - L1MCa LINE L1 -5001 1940 1371 695 163 0 0 chr1 229157170 229157268 -13507085 - AluS SINE Alu -213 99 2 2296 299 109 38 chr1 229157278 229157478 -13506875 - L1MCa LINE L1 -5187 1236 1052 2574 51 0 3 chr1 229157478 229157790 -13506563 - AluY SINE Alu 0 311 1 2296 299 109 38 chr1 229157790 229158721 -13505632 - L1MCa LINE L1 -5371 1052 24 218 281 0 18 chr1 229159281 229159338 -13505015 - MER5A DNA MER1_type -4 185 130 580 315 40 15 chr1 229159424 229159624 -13504729 - MIR SINE MIR -41 221 17 1921 125 0 0 chr1 229160753 229161055 -13503298 + AluSx SINE Alu 27 328 0 454 183 150 110 chr1 229161139 229161326 -13503027 - MER112 DNA MER1_type 0 256 55 1658 139 13 66 chr1 229161326 229161629 -13502724 - AluJo SINE Alu -10 302 16 454 183 150 110 chr1 229161629 229161687 -13502666 - MER112 DNA MER1_type -201 55 1 184 360 43 14 chr1 229162379 229162518 -13501835 - L3b LINE CR1 -122 1461 1319 407 346 133 20 chr1 229162928 229162995 -13501358 - L2 LINE L2 -17 3255 3197 1785 179 3 13 chr1 229162995 229163307 -13501046 + AluJo SINE Alu 2 310 -2 407 346 133 20 chr1 229163307 229163586 -13500767 - L2 LINE L2 -75 3197 2870 2409 106 13 34 chr1 229163728 229164106 -13500247 + MSTA LTR MaLR 59 428 0 587 205 54 118 chr1 229164136 229164506 -13499847 + L1ME LINE L1 3800 4127 -2019 1530 212 101 24 chr1 229164620 229165185 -13499168 + L1ME LINE L1 5175 5800 -362 1660 107 0 34 chr1 229165224 229165458 -13498895 - AluSx SINE Alu -16 296 71 2957 120 72 16 chr1 229165459 229165943 -13498410 - MER9 LTR ERVK 0 511 1 520 137 14 0 chr1 229165943 229166016 -13498337 - AluSx SINE Alu -238 75 2 24 32 0 0 chr1 229166654 229166685 -13497668 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 229166837 229166859 -13497494 + AT_rich Low_complexity Low_complexity 1 22 0 2917 135 35 14 chr1 229167126 229167608 -13496745 - L1PA16 LINE L1 0 6166 5675 232 93 0 23 chr1 229167608 229167640 -13496713 - Alu SINE Alu -9 293 261 3833 120 67 32 chr1 229168876 229169101 -13495252 - MER39B LTR ERV1 0 653 437 1698 119 12 0 chr1 229169101 229169344 -13495009 + AluSc SINE Alu 44 289 -20 3833 120 67 32 chr1 229169344 229169749 -13494604 - MER39B LTR ERV1 -216 437 1 3625 148 89 27 chr1 229170702 229171397 -13492956 + L1PA16 LINE L1 5426 6163 -3 736 299 73 38 chr1 229171964 229172359 -13491994 - MLT1K LTR MaLR -16 572 164 213 330 42 0 chr1 229172482 229172600 -13491753 - L2 LINE L2 -884 2430 2308 2923 139 72 28 chr1 229172676 229173057 -13491296 + LTR49 LTR ERV1 1 417 -178 4242 140 21 2 chr1 229173057 229173680 -13490673 + MER41B LTR ERV1 1 635 0 2923 139 72 28 chr1 229173680 229173868 -13490485 + LTR49 LTR ERV1 417 595 0 350 266 0 0 chr1 229173908 229173987 -13490366 - MER116 DNA Mariner 0 80 2 13036 137 105 2 chr1 229175223 229177389 -13486964 - Tigger1 DNA MER2_type 0 2418 31 2531 167 47 14 chr1 229177443 229177951 -13486402 - L1MB3 LINE L1 -66 6117 5593 264 256 178 0 chr1 229178199 229178289 -13486064 + MER94 DNA DNA 4 109 -25 330 340 82 19 chr1 229178529 229178735 -13485618 + MIR SINE MIR 17 235 -27 2149 198 40 8 chr1 229178816 229179302 -13485051 - Charlie1b DNA MER1_type -5 518 1 469 310 120 15 chr1 229180159 229180433 -13483920 - L1MC4 LINE L1 -166 7876 7574 2189 87 21 7 chr1 229180492 229180780 -13483573 + AluSp SINE Alu 1 292 -21 834 119 0 0 chr1 229180780 229180914 -13483439 + (TA)n Simple_repeat Simple_repeat 2 135 0 2834 151 24 0 chr1 229181595 229182011 -13482342 - MSTB LTR MaLR 0 426 1 370 273 78 65 chr1 229182448 229182770 -13481583 - L1M4 LINE L1 -878 5268 4943 23 33 0 0 chr1 229182807 229182837 -13481516 + AT_rich Low_complexity Low_complexity 1 30 0 2193 127 0 0 chr1 229183735 229184043 -13480310 - AluSx SINE Alu -4 308 1 271 291 82 67 chr1 229184503 229184637 -13479716 - L2 LINE L2 -5 3267 3132 192 211 0 58 chr1 229184734 229184786 -13479567 + L2 LINE L2 3264 3312 -1 4201 188 47 29 chr1 229185100 229185931 -13478422 - MER21B LTR ERV1 -17 846 1 364 289 119 9 chr1 229186299 229186476 -13477877 - MIR SINE MIR -13 249 44 183 42 0 0 chr1 229187380 229187404 -13476949 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 186 239 97 89 chr1 229187439 229187552 -13476801 + MER5A DNA MER1_type 62 184 -5 403 320 90 30 chr1 229187959 229188193 -13476160 - MIR SINE MIR 0 262 15 237 284 23 68 chr1 229188296 229188384 -13475969 + MIR SINE MIR 35 118 -90 1926 106 4 0 chr1 229188505 229188759 -13475594 - L1PA8 LINE L1 -10 6162 5908 21 36 0 0 chr1 229188788 229188816 -13475537 + AT_rich Low_complexity Low_complexity 1 28 0 529 125 0 0 chr1 229189224 229189289 -13475064 + AluSp/q SINE Alu 216 283 -30 420 20 0 0 chr1 229189289 229189338 -13475015 + (CA)n Simple_repeat Simple_repeat 1 49 0 529 125 0 0 chr1 229189338 229189352 -13475001 + AluSp/q SINE Alu 282 295 -18 360 0 0 0 chr1 229189384 229189424 -13474929 + (CA)n Simple_repeat Simple_repeat 2 41 0 497 146 0 0 chr1 229189511 229189576 -13474777 + AluSp/q SINE Alu 216 283 -30 369 0 0 0 chr1 229189576 229189617 -13474736 + (CA)n Simple_repeat Simple_repeat 1 41 0 497 146 0 0 chr1 229189617 229189633 -13474720 + AluSp/q SINE Alu 282 297 -16 1576 108 0 0 chr1 229189644 229189856 -13474497 + AluSg/x SINE Alu 86 297 -15 224 276 43 78 chr1 229189883 229189999 -13474354 + MER5B DNA MER1_type 62 173 -5 185 146 73 0 chr1 229192552 229192593 -13471760 + L2 LINE L2 3265 3308 -5 333 216 84 58 chr1 229193853 229194043 -13470310 - L1ME4a LINE L1 -67 6054 5860 282 317 110 35 chr1 229195739 229195884 -13468469 - L2 LINE L2 -1 3271 3116 2845 168 73 49 chr1 229200029 229200764 -13463589 + LTR1B LTR ERV1 1 785 0 1508 175 130 7 chr1 229200902 229201171 -13463182 + AluJo SINE Alu 1 302 0 2377 81 0 16 chr1 229201432 229201740 -13462613 + AluSq SINE Alu 1 303 -10 340 328 118 25 chr1 229202367 229202571 -13461782 - MIR SINE MIR -20 242 20 21 36 0 0 chr1 229206368 229206396 -13457957 + AT_rich Low_complexity Low_complexity 1 28 0 263 338 86 60 chr1 229206583 229206932 -13457421 + L2 LINE L2 2910 3267 -5 24 0 0 0 chr1 229208433 229208457 -13455896 + AT_rich Low_complexity Low_complexity 1 24 0 2362 71 3 3 chr1 229208999 229209293 -13455060 - AluY SINE Alu -17 294 1 1364 147 290 35 chr1 229209569 229209694 -13454659 - Tigger2 DNA MER2_type 0 2718 2626 1461 201 7 14 chr1 229209694 229209988 -13454365 - AluJo SINE Alu -20 292 1 1364 147 290 35 chr1 229209988 229210261 -13454092 - Tigger2 DNA MER2_type -92 2626 1 2160 111 3 25 chr1 229210384 229210699 -13453654 - AluJb SINE Alu -4 308 1 351 300 33 33 chr1 229210959 229211139 -13453214 + MARNA DNA Mariner 366 545 -41 2482 61 0 0 chr1 229211161 229211455 -13452898 - AluY SINE Alu -17 294 1 246 352 42 49 chr1 229212659 229212801 -13451552 + L2 LINE L2 3127 3267 -5 215 266 111 142 chr1 229213194 229213483 -13450870 + L2 LINE L2 2992 3271 -1 1092 136 157 21 chr1 229213489 229213724 -13450629 + L1MA6 LINE L1 6034 6300 0 242 200 74 53 chr1 229213744 229213839 -13450514 - MARNA DNA Mariner -457 129 33 2039 110 7 20 chr1 229214004 229214305 -13450048 + AluSc SINE Alu 1 297 -12 241 261 11 68 chr1 229214677 229214765 -13449588 - MIR SINE MIR -92 170 88 3290 160 31 50 chr1 229215089 229215772 -13448581 - L1MA9 LINE L1 -22 6290 5621 2009 126 10 0 chr1 229215769 229216078 -13448275 + L1MA9 LINE L1 5313 5624 -688 * 457 313 73 32 chr1 229216777 229217026 -13447327 - L3 LINE CR1 -974 603 250 1365 212 186 36 chr1 229217065 229217588 -13446765 + LTR36 LTR ERV1 1 601 -10 385 196 10 20 chr1 229218709 229218811 -13445542 + CT-rich Low_complexity Low_complexity 4 104 0 300 364 141 11 chr1 229218933 229219117 -13445236 - L2 LINE L2 -169 3103 2896 804 186 90 0 chr1 229219161 229219306 -13445047 + FRAM SINE Alu 5 162 -14 2355 91 0 0 chr1 229220307 229220604 -13443749 - AluSg SINE Alu -13 297 1 1667 112 17 0 chr1 229220903 229221136 -13443217 - AluSq SINE Alu -17 296 60 2331 76 41 3 chr1 229221538 229221852 -13442501 - L1MA3 LINE L1 -2 6303 5978 252 305 42 58 chr1 229222321 229222342 -13442011 - L2 LINE L2 -1120 2194 2174 619 256 41 17 chr1 229222342 229222514 -13441839 - MER45A DNA AcHobo -2 176 1 252 305 42 58 chr1 229222514 229222682 -13441671 - L2 LINE L2 -1140 2174 2008 214 287 87 61 chr1 229223582 229223697 -13440656 - L2 LINE L2 -1829 1485 1368 249 301 14 14 chr1 229224616 229224689 -13439664 + L2 LINE L2 3200 3272 0 454 310 64 5 chr1 229224989 229225176 -13439177 - MIR SINE MIR -45 217 20 849 257 62 45 chr1 229226442 229226846 -13437507 + L1MD1 LINE L1 4114 4524 -1622 351 167 0 0 chr1 229227019 229227079 -13437274 - MER116 DNA Mariner -1 79 20 503 104 26 0 chr1 229227237 229227314 -13437039 + Alu SINE Alu 231 309 0 1534 198 42 31 chr1 229227332 229227856 -13436497 + L1MD1 LINE L1 5256 5953 -289 483 196 56 18 chr1 229227852 229227963 -13436390 + L1MCa LINE L1 2378 2492 -3934 * 1842 247 25 41 chr1 229228072 229228703 -13435650 + L1M4 LINE L1 4267 4887 -1259 245 277 0 0 chr1 229228704 229228751 -13435602 - MER2 DNA MER2_type -298 47 1 4762 159 134 97 chr1 229228751 229229193 -13435160 + L1MC3 LINE L1 6401 6825 -960 315 0 0 0 chr1 229229193 229229228 -13435125 + (CA)n Simple_repeat Simple_repeat 2 36 0 4762 159 134 97 chr1 229229228 229229442 -13434911 + L1MC3 LINE L1 6825 7030 -755 341 255 21 21 chr1 229229442 229229536 -13434817 + MLT1K LTR MaLR 32 125 -442 4762 159 134 97 chr1 229229536 229229647 -13434706 + L1MC3 LINE L1 7030 7135 -650 2174 112 7 3 chr1 229229647 229229942 -13434411 - AluSq SINE Alu -17 296 1 4762 159 134 97 chr1 229229942 229230414 -13433939 + L1MC3 LINE L1 7135 7785 0 2431 67 0 10 chr1 229230419 229230716 -13433637 + AluSg SINE Alu 1 294 -16 339 291 92 48 chr1 229232235 229232462 -13431891 + L2 LINE L2 1886 2122 -1192 895 305 89 57 chr1 229232681 229233047 -13431306 + MLT1K LTR MaLR 136 520 -68 2281 105 0 0 chr1 229233047 229233342 -13431011 + AluSx SINE Alu 1 295 -17 895 305 89 57 chr1 229233342 229233414 -13430939 + MLT1K LTR MaLR 520 588 0 362 291 118 64 chr1 229233415 229233616 -13430737 + L1MC4a LINE L1 5722 5954 -167 305 24 24 0 chr1 229233616 229233658 -13430695 + (TG)n Simple_repeat Simple_repeat 2 44 0 362 291 118 64 chr1 229233658 229233813 -13430540 + L1MC4a LINE L1 5954 6099 -22 25 0 0 0 chr1 229233828 229233853 -13430500 + AT_rich Low_complexity Low_complexity 1 25 0 555 356 82 49 chr1 229233909 229234712 -13429641 + L2 LINE L2 2335 3176 -96 778 253 84 9 chr1 229234721 229234946 -13429407 + MIR SINE MIR 21 262 0 222 216 137 0 chr1 229234969 229235020 -13429333 + L2 LINE L2 3210 3267 -5 2246 128 0 0 chr1 229235442 229235754 -13428599 - AluSx SINE Alu 0 312 1 5190 125 290 25 chr1 229236069 229237410 -13426943 + pTR5 LTR ERV1 743 2438 0 360 0 0 0 chr1 229237585 229237625 -13426728 + (TG)n Simple_repeat Simple_repeat 1 40 0 2135 91 4 0 chr1 229237625 229237901 -13426452 - AluY SINE Alu -33 278 2 21 36 0 0 chr1 229238495 229238523 -13425830 + AT_rich Low_complexity Low_complexity 1 28 0 2092 91 0 81 chr1 229239062 229239382 -13424971 - AluSx SINE Alu -18 294 1 237 257 89 20 chr1 229239892 229239993 -13424360 - MIR SINE MIR -105 157 50 2088 144 0 0 chr1 229240012 229240318 -13424035 - AluSq SINE Alu -7 306 1 1688 160 0 15 chr1 229240693 229240955 -13423398 + AluJo SINE Alu 1 258 -54 27 73 0 0 chr1 229241174 229241229 -13423124 + AT_rich Low_complexity Low_complexity 1 55 0 432 193 0 0 chr1 229241687 229241796 -13422557 + GA-rich Low_complexity Low_complexity 4 112 0 312 304 81 37 chr1 229242420 229242581 -13421772 - MIR SINE MIR -83 179 12 3146 172 5 16 chr1 229244193 229244798 -13419555 + MER6A DNA MER2_type 1 598 -7 294 351 18 9 chr1 229247551 229247662 -13416691 + MIR SINE MIR 18 129 -133 2066 122 3 23 chr1 229248504 229248807 -13415546 + AluSx SINE Alu 1 297 -15 442 186 0 34 chr1 229248807 229248925 -13415428 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 450 360 88 21 chr1 229249663 229250313 -13414040 + L2 LINE L2 1706 2398 -916 187 137 118 78 chr1 229250372 229250423 -13413930 - MER5B DNA MER1_type -6 172 120 466 224 37 19 chr1 229250477 229250584 -13413769 - MER5A DNA MER1_type -77 112 4 879 212 0 41 chr1 229250587 229250757 -13413596 + MER5A DNA MER1_type 26 188 -1 419 276 94 42 chr1 229250903 229251095 -13413258 + L2 LINE L2 1501 1702 -1612 1417 160 0 5 chr1 229251104 229251317 -13413036 + AluJb SINE Alu 87 298 -14 1004 267 27 40 chr1 229251506 229252073 -13412280 - L1ME LINE L1 -519 5651 5095 2315 96 0 6 chr1 229252073 229252385 -13411968 - AluY SINE Alu -1 310 1 1004 267 27 40 chr1 229252385 229252593 -13411760 - L1ME LINE L1 -1075 5095 4886 659 264 28 0 chr1 229252802 229252984 -13411369 - MER97c DNA MER1_type? -903 187 1 518 161 10 0 chr1 229253046 229253144 -13411209 + MER46A DNA MER2_type -1 97 -139 327 200 50 0 chr1 229253136 229253216 -13411137 + MER46A DNA MER2_type 153 236 0 * 2689 121 7 9 chr1 229254258 229254696 -13409657 - Tigger2 DNA MER2_type -2 2716 2280 314 183 33 0 chr1 229254707 229254767 -13409586 - Tigger2 DNA MER2_type -2656 62 1 1763 110 114 11 chr1 229255540 229255821 -13408532 - AluSg SINE Alu 0 310 1 25 0 0 0 chr1 229257004 229257029 -13407324 + AT_rich Low_complexity Low_complexity 1 25 0 380 256 85 0 chr1 229258170 229258252 -13406101 + L2 LINE L2 3167 3255 -17 1480 130 0 0 chr1 229258781 229258988 -13405365 - AluSq SINE Alu 0 313 107 235 200 27 53 chr1 229259781 229259856 -13404497 + HAL1 LINE L1 1298 1370 -1137 261 308 212 0 chr1 229259939 229260137 -13404216 - MIR SINE MIR -12 250 11 550 244 140 15 chr1 229260153 229260424 -13403929 + HAL1 LINE L1 1437 1741 -766 485 256 101 62 chr1 229260555 229260989 -13403364 + HAL1 LINE L1 2057 2507 0 2039 123 0 7 chr1 229261190 229261499 -13402854 - AluY SINE Alu 0 307 1 883 157 0 116 chr1 229261875 229261906 -13402447 - FAM SINE Alu -136 175 142 2149 133 3 0 chr1 229261906 229262208 -13402145 + AluSx SINE Alu 1 303 -9 883 157 0 116 chr1 229262208 229262374 -13401979 - FAM SINE Alu -169 142 1 325 333 75 0 chr1 229262474 229262594 -13401759 + L2 LINE L2 3183 3311 -2 2272 95 0 0 chr1 229263755 229264061 -13400292 + AluSx SINE Alu 1 306 0 378 225 73 60 chr1 229264358 229264509 -13399844 + MIR3 SINE MIR 18 170 -38 216 0 0 0 chr1 229265276 229265300 -13399053 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 214 331 6 0 chr1 229265476 229265636 -13398717 + (TATATG)n Simple_repeat Simple_repeat 3 163 0 * 229 328 17 17 chr1 229265567 229265683 -13398670 + A-rich Low_complexity Low_complexity 2 117 0 * 256 339 6 0 chr1 229265650 229265824 -13398529 + (TATATG)n Simple_repeat Simple_repeat 4 178 0 23 0 0 0 chr1 229266436 229266459 -13397894 + AT_rich Low_complexity Low_complexity 1 23 0 484 121 99 0 chr1 229267243 229267334 -13397019 - L1MB4 LINE L1 0 6180 6081 423 130 0 0 chr1 229269080 229269157 -13395196 + (TA)n Simple_repeat Simple_repeat 1 77 0 226 215 46 0 chr1 229270257 229270322 -13394031 - L1MA10 LINE L1 -2 6332 6265 2145 95 7 7 chr1 229270323 229270617 -13393736 + AluSx SINE Alu 1 294 -18 226 241 19 0 chr1 229270822 229270876 -13393477 - AluJb SINE Alu -73 229 175 1553 184 39 17 chr1 229270876 229271234 -13393119 - L1ME1 LINE L1 -223 5943 5578 * 2419 139 42 13 chr1 229271233 229271685 -13392668 + L1MA6 LINE L1 5306 5770 -530 2732 134 34 23 chr1 229271761 229272289 -13392064 + L1MA6 LINE L1 5767 6300 0 527 211 109 8 chr1 229272296 229272424 -13391929 - L1ME1 LINE L1 -572 5592 5452 868 149 5 112 chr1 229272425 229272640 -13391713 + MER20 DNA MER1_type 27 218 -1 399 110 55 0 chr1 229272642 229272715 -13391638 - L1ME1 LINE L1 -726 5452 5376 2154 228 73 60 chr1 229272723 229273300 -13391053 + L1M4 LINE L1 4379 4976 -1170 216 0 0 0 chr1 229273300 229273324 -13391029 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2154 228 73 60 chr1 229273324 229273731 -13390622 + L1M4 LINE L1 4976 5376 -770 2883 211 16 33 chr1 229273909 229273979 -13390374 + L1MA9 LINE L1 5538 5608 -704 753 174 0 23 chr1 229273979 229274111 -13390242 + FLAM_C SINE Alu 1 129 -4 2883 211 16 33 chr1 229274111 229274456 -13389897 + L1MA9 LINE L1 5608 5937 -375 216 0 0 0 chr1 229274456 229274480 -13389873 + (GA)n Simple_repeat Simple_repeat 2 25 0 2883 211 16 33 chr1 229274480 229274813 -13389540 + L1MA9 LINE L1 5937 6274 -38 509 366 91 6 chr1 229275739 229276070 -13388283 - L1ME LINE L1 -377 5744 5386 32 43 0 0 chr1 229276417 229276463 -13387890 + AT_rich Low_complexity Low_complexity 1 46 0 2590 24 3 0 chr1 229276484 229276780 -13387573 + AluY SINE Alu 1 297 -14 290 295 65 14 chr1 229276798 229276937 -13387416 - L1ME3A LINE L1 -37 6928 6783 428 267 33 0 chr1 229277048 229277198 -13387155 - L1ME3A LINE L1 -219 6746 6592 1037 270 48 6 chr1 229277221 229277686 -13386667 - L1ME3A LINE L1 -454 6503 6020 369 368 11 16 chr1 229277715 229277900 -13386453 - L1ME3A LINE L1 -1031 5910 5727 348 278 60 20 chr1 229277869 229278020 -13386333 - L1ME3A LINE L1 -4213 2909 2753 * 737 181 58 0 chr1 229278034 229278172 -13386181 - MER46A DNA MER2_type -90 146 1 844 253 30 60 chr1 229278511 229279329 -13385024 - L1MCc LINE L1 -4722 2400 1377 493 325 140 50 chr1 229279412 229279935 -13384418 - L1MCc LINE L1 -5485 1446 877 408 298 91 58 chr1 229280203 229280286 -13384067 - L1M4 LINE L1 -1318 4828 4749 2252 100 20 0 chr1 229280286 229280585 -13383768 - AluSq SINE Alu -8 305 1 408 298 91 58 chr1 229280585 229280984 -13383369 - L1M4 LINE L1 -1397 4749 4330 25 51 0 0 chr1 229281146 229281185 -13383168 + AT_rich Low_complexity Low_complexity 1 39 0 236 101 101 7 chr1 229281185 229281333 -13383020 + (TA)n Simple_repeat Simple_repeat 1 162 0 66 35 0 0 chr1 229281333 229281420 -13382933 + AT_rich Low_complexity Low_complexity 1 87 0 231 133 50 67 chr1 229281435 229281495 -13382858 + L1M4 LINE L1 4109 4167 -1979 31 0 0 0 chr1 229281495 229281526 -13382827 + AT_rich Low_complexity Low_complexity 1 31 0 431 314 27 38 chr1 229282033 229282218 -13382135 + MER5A DNA MER1_type 1 183 -6 197 277 133 12 chr1 229283101 229283184 -13381169 - L2 LINE L2 -8 3264 3172 2277 72 17 7 chr1 229283851 229284143 -13380210 + AluY SINE Alu 1 295 -16 5186 49 2 0 chr1 229284163 229284750 -13379603 + LTR10C LTR ERV1 4 591 0 22 0 0 0 chr1 229285132 229285154 -13379199 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 229286609 229286637 -13377716 + AT_rich Low_complexity Low_complexity 1 28 0 2238 162 31 31 chr1 229286739 229287300 -13377053 + LTR10E LTR ERV1 1 621 0 2120 121 10 0 chr1 229288319 229288616 -13375737 - AluSx SINE Alu -12 300 1 2058 171 25 22 chr1 229288690 229289052 -13375301 - MLT1A1 LTR MaLR -2 363 1 378 220 60 0 chr1 229289192 229289292 -13375061 + MIR SINE MIR 79 184 -78 282 299 9 115 chr1 229289462 229289679 -13374674 + L2 LINE L2 2565 2758 -556 339 274 40 46 chr1 229289785 229289849 -13374504 + L2 LINE L2 2914 2977 -295 207 0 0 0 chr1 229289849 229289872 -13374481 + (CATTC)n Simple_repeat Simple_repeat 4 26 0 339 274 40 46 chr1 229289872 229289982 -13374371 + L2 LINE L2 2977 3087 -185 245 241 0 0 chr1 229291426 229291484 -13372869 + MIR SINE MIR 92 149 -113 438 53 0 0 chr1 229292194 229292251 -13372102 + (CA)n Simple_repeat Simple_repeat 2 58 0 195 308 88 0 chr1 229292384 229292475 -13371878 - MIR3 SINE MIR -21 187 89 180 0 0 0 chr1 229294009 229294029 -13370324 + (CA)n Simple_repeat Simple_repeat 1 20 0 2684 162 33 143 chr1 229295147 229295653 -13368700 - MLT1E1 LTR MaLR -1 653 251 2353 87 0 0 chr1 229295653 229295939 -13368414 - AluSg SINE Alu -23 287 2 2684 162 33 143 chr1 229295939 229296166 -13368187 - MLT1E1 LTR MaLR -403 251 1 260 245 82 10 chr1 229296186 229296284 -13368069 - MIR SINE MIR -35 227 123 235 325 51 51 chr1 229296291 229296408 -13367945 + MIR SINE MIR 76 192 -70 311 296 0 74 chr1 229296573 229296681 -13367672 + MIR3 SINE MIR 83 182 -26 413 288 36 7 chr1 229297966 229298105 -13366248 + MER117 DNA MER1_type 4 146 -51 567 271 48 16 chr1 229299405 229299593 -13364760 - Charlie8 DNA MER1_type -2190 227 34 335 186 34 45 chr1 229299937 229299963 -13364390 + (TTATA)n Simple_repeat Simple_repeat 5 30 -149 647 109 84 25 chr1 229299963 229300082 -13364271 + L1MB1 LINE L1 6041 6166 -2 335 186 34 45 chr1 229300082 229300232 -13364121 + (TTATA)n Simple_repeat Simple_repeat 30 179 0 213 250 0 0 chr1 229300250 229300298 -13364055 + L2 LINE L2 3256 3303 -10 328 160 53 0 chr1 229300685 229300760 -13363593 + L1ME1 LINE L1 27 105 -6318 1632 288 68 20 chr1 229300768 229301677 -13362676 + L1ME1 LINE L1 1439 2609 -4513 4678 232 99 37 chr1 229301701 229301854 -13362499 + L1ME1 LINE L1 4346 4488 -2473 2378 90 0 3 chr1 229301854 229302155 -13362198 + AluY SINE Alu 1 300 -11 4678 232 99 37 chr1 229302155 229303997 -13360356 + L1ME1 LINE L1 4488 6460 -501 586 297 6 0 chr1 229303998 229304163 -13360190 + L1ME1 LINE L1 6783 6948 -13 623 268 66 6 chr1 229304184 229304367 -13359986 + L1ME1 LINE L1 6737 6930 -31 271 294 86 50 chr1 229304405 229304626 -13359727 + HAL1b LINE L1 439 667 -681 869 233 161 47 chr1 229305171 229305574 -13358779 - HAL1 LINE L1 -46 2461 2013 494 294 83 0 chr1 229305568 229305772 -13358581 - HAL1 LINE L1 -2270 237 17 * 223 115 39 39 chr1 229306491 229306543 -13357810 + GA-rich Low_complexity Low_complexity 5 56 0 222 118 0 0 chr1 229306566 229306600 -13357753 + (TG)n Simple_repeat Simple_repeat 2 35 0 289 219 115 0 chr1 229306631 229306727 -13357626 - MIR SINE MIR -59 203 97 285 172 0 0 chr1 229306915 229306979 -13357374 + (CA)n Simple_repeat Simple_repeat 2 65 0 824 11 0 0 chr1 229307503 229307595 -13356758 - AluSg/x SINE Alu -6 303 212 2471 65 0 13 chr1 229307859 229308168 -13356185 + AluSx SINE Alu 1 305 -7 518 70 28 0 chr1 229308172 229308243 -13356110 + L1PA7 LINE L1 6082 6154 0 729 259 141 62 chr1 229309950 229310382 -13353971 - L3 LINE CR1 -37 1540 1075 1733 178 20 68 chr1 229311133 229311532 -13352821 + MLT1B LTR MaLR 2 381 -9 22 0 0 0 chr1 229312055 229312077 -13352276 + AT_rich Low_complexity Low_complexity 1 22 0 2049 117 7 7 chr1 229312531 229312843 -13351510 + AluSx SINE Alu 1 312 0 382 280 83 38 chr1 229312867 229312999 -13351354 - L2 LINE L2 -1 3271 3134 2185 106 36 0 chr1 229313857 229314158 -13350195 + AluSx SINE Alu 1 312 0 538 261 160 16 chr1 229314680 229314868 -13349485 - MIR SINE MIR -33 229 15 2238 102 0 10 chr1 229315074 229315378 -13348975 - AluSq SINE Alu -12 301 1 342 98 0 0 chr1 229315946 229315997 -13348356 + (A)n Simple_repeat Simple_repeat 1 51 0 2137 113 0 7 chr1 229317405 229317698 -13346655 - AluSx SINE Alu -21 291 1 609 152 0 0 chr1 229318452 229318544 -13345809 - FRAM SINE Alu -14 162 71 395 316 58 49 chr1 229318587 229318812 -13345541 - MIR SINE MIR -1 261 35 1392 146 21 0 chr1 229320015 229320248 -13344105 + L1MC3 LINE L1 7227 7464 -321 1726 157 19 31 chr1 229320377 229320702 -13343651 + L1MC3 LINE L1 7465 7785 0 2449 84 0 3 chr1 229320936 229321246 -13343107 - AluSg SINE Alu -1 309 1 346 281 120 52 chr1 229321321 229321513 -13342840 - MIR SINE MIR -8 254 50 270 330 23 0 chr1 229321532 229321620 -13342733 + MER5A DNA MER1_type 1 90 -99 5040 150 15 28 chr1 229323583 229324472 -13339881 + L1MA7 LINE L1 5413 6289 -2 621 290 120 0 chr1 229324509 229324726 -13339627 - MIR SINE MIR 0 262 20 23 54 0 0 chr1 229324871 229324908 -13339445 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr1 229325329 229325352 -13339001 + (A)n Simple_repeat Simple_repeat 1 23 0 2322 89 3 10 chr1 229325366 229325669 -13338684 - AluY SINE Alu -10 301 1 5813 146 50 17 chr1 229326757 229327836 -13336517 - L1MC1 LINE L1 -6 6327 5207 2473 246 75 119 chr1 229329047 229329533 -13334820 - L2 LINE L2 -39 3274 2768 629 158 32 0 chr1 229329533 229329628 -13334725 + FLAM_A SINE Alu 1 98 -44 2473 246 75 119 chr1 229329628 229330581 -13333772 - L2 LINE L2 -545 2768 1718 2578 41 0 0 chr1 229330581 229330876 -13333477 - L1PA8 LINE L1 -17 6155 5861 2473 246 75 119 chr1 229330876 229330938 -13333415 - L2 LINE L2 -1595 1718 1655 663 285 148 17 chr1 229330980 229331271 -13333082 + L2 LINE L2 2984 3312 -1 2560 56 3 0 chr1 229331943 229332248 -13332105 + L1PA8 LINE L1 5867 6172 0 24 0 0 0 chr1 229332329 229332353 -13332000 + AT_rich Low_complexity Low_complexity 1 24 0 434 282 88 6 chr1 229332421 229332591 -13331762 - MIR SINE MIR -51 211 28 2114 124 0 0 chr1 229333406 229333689 -13330664 - AluSq SINE Alu -30 283 1 25 31 0 0 chr1 229334100 229334132 -13330221 + AT_rich Low_complexity Low_complexity 1 32 0 201 195 0 0 chr1 229334553 229334594 -13329759 + (TA)n Simple_repeat Simple_repeat 1 41 0 3081 131 102 11 chr1 229335465 229335993 -13328360 - L1MB2 LINE L1 -4 6167 5592 242 257 238 9 chr1 229338185 229338290 -13326063 - MIR SINE MIR -63 145 17 238 316 29 29 chr1 229339017 229339153 -13325200 + MIR SINE MIR 109 244 -18 1888 131 167 0 chr1 229339305 229339617 -13324736 + MER47A DNA MER2_type 1 364 -2 186 43 0 0 chr1 229339983 229340006 -13324347 + (TAA)n Simple_repeat Simple_repeat 3 25 0 405 0 0 0 chr1 229340544 229340589 -13323764 + (TG)n Simple_repeat Simple_repeat 2 46 0 612 318 68 59 chr1 229340878 229341321 -13323032 + L2 LINE L2 2824 3270 -2 915 225 12 0 chr1 229342409 229342569 -13321784 - FRAM SINE Alu -4 162 1 198 0 0 0 chr1 229342718 229342740 -13321613 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2073 122 0 3 chr1 229342740 229343021 -13321332 - AluSx SINE Alu -32 280 1 261 0 0 0 chr1 229343077 229343106 -13321247 + (TA)n Simple_repeat Simple_repeat 1 29 0 200 320 0 0 chr1 229343254 229343304 -13321049 + L2 LINE L2 3001 3050 -222 22 0 0 0 chr1 229344379 229344401 -13319952 + AT_rich Low_complexity Low_complexity 1 22 0 450 282 87 60 chr1 229344800 229345066 -13319287 + MLT1L LTR MaLR 3 275 -340 411 306 59 16 chr1 229345162 229345348 -13319005 + MLT1L LTR MaLR 422 615 0 1784 163 3 13 chr1 229345528 229345828 -13318525 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr1 229346540 229346561 -13317792 + AT_rich Low_complexity Low_complexity 1 21 0 283 327 117 6 chr1 229346673 229346835 -13317518 + MIR SINE MIR 68 247 -15 573 326 16 33 chr1 229350870 229350942 -13313411 - MIR SINE MIR 0 262 190 2304 105 3 0 chr1 229350942 229351248 -13313105 - AluSg SINE Alu -3 307 1 573 326 16 33 chr1 229351248 229351420 -13312933 - MIR SINE MIR -72 190 22 1883 157 3 13 chr1 229351547 229351859 -13312494 + AluSx SINE Alu 1 309 -3 2152 103 3 10 chr1 229352753 229353063 -13311290 + AluSg SINE Alu 1 308 -2 256 277 199 30 chr1 229353556 229353722 -13310631 + MIR SINE MIR 69 262 0 799 164 0 82 chr1 229354608 229354717 -13309636 - FLAM_C SINE Alu -177 135 39 2321 97 0 3 chr1 229354717 229355015 -13309338 + AluSg SINE Alu 2 298 -12 799 164 0 82 chr1 229355015 229355051 -13309302 - FLAM_C SINE Alu -273 39 2 641 293 153 33 chr1 229355323 229355841 -13308512 + MLT1K LTR MaLR 4 583 -5 336 263 76 25 chr1 229358810 229358928 -13305425 + MER94 DNA DNA 1 124 -10 182 353 0 0 chr1 229359283 229359351 -13305002 - L2 LINE L2 -320 2952 2885 21 0 0 0 chr1 229359930 229359951 -13304402 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 229360037 229360067 -13304286 + AT_rich Low_complexity Low_complexity 1 30 0 1474 189 0 51 chr1 229360449 229360765 -13303588 - AluJo SINE Alu 0 301 1 528 289 148 12 chr1 229361666 229362091 -13302262 - L1ME4a LINE L1 -5 6116 5634 2934 187 25 18 chr1 229362094 229362646 -13301707 + MER89 LTR ERV1 4 559 0 431 333 78 0 chr1 229363407 229363587 -13300766 - MIR SINE MIR -56 206 13 947 195 56 5 chr1 229363630 229363825 -13300528 - MER3 DNA MER1_type -3 206 2 396 239 28 9 chr1 229364156 229364265 -13300088 - MIR3 SINE MIR -1 207 97 606 259 48 72 chr1 229364310 229364488 -13299865 + MIR SINE MIR 18 190 -72 550 271 0 8 chr1 229364488 229364621 -13299732 + MER94 DNA DNA 2 133 -1 606 259 48 72 chr1 229364621 229364693 -13299660 + MIR SINE MIR 190 262 0 2848 63 34 0 chr1 229366582 229366933 -13297420 - L1PA8 LINE L1 -6 6166 5804 1282 135 10 19 chr1 229367010 229367217 -13297136 - MER2 DNA MER2_type -135 210 6 864 198 0 19 chr1 229369411 229369568 -13294785 - FRAM SINE Alu -14 162 9 2294 116 0 0 chr1 229370572 229370875 -13293478 - AluSx SINE Alu -9 303 1 1788 157 7 33 chr1 229372076 229372376 -13291977 + AluJo SINE Alu 2 293 -19 415 257 84 92 chr1 229372488 229372832 -13291521 + MLT1I LTR MaLR 67 448 -2 772 175 0 0 chr1 229373346 229373460 -13290893 + FLAM_A SINE Alu 1 114 -19 180 0 0 0 chr1 229373466 229373486 -13290867 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2153 114 7 13 chr1 229374156 229374463 -13289890 + AluSq SINE Alu 1 305 -8 3762 148 16 20 chr1 229374465 229375041 -13289312 - L1MB3 LINE L1 0 6183 5609 2087 125 7 0 chr1 229375041 229375329 -13289024 - AluSx SINE Alu -20 292 3 3762 148 16 20 chr1 229375329 229375392 -13288961 - L1MB3 LINE L1 -574 5609 5547 189 0 0 0 chr1 229377181 229377202 -13287151 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 31 58 0 0 chr1 229378363 229378415 -13285938 + AT_rich Low_complexity Low_complexity 1 52 0 2334 171 0 0 chr1 229378722 229379132 -13285221 - L1PB1 LINE L1 -1122 5024 4615 7147 72 1 4 chr1 229379136 229380274 -13284079 + L1PB1 LINE L1 5017 6151 0 39 0 0 0 chr1 229380297 229380336 -13284017 + AT_rich Low_complexity Low_complexity 1 39 0 2151 110 7 3 chr1 229380750 229381042 -13283311 - AluSg SINE Alu -17 293 1 245 264 0 46 chr1 229381153 229381240 -13283113 - MER20B DNA MER1_type -700 83 1 970 196 59 59 chr1 229381354 229381573 -13282780 - MER20 DNA MER1_type 0 219 1 2157 100 4 0 chr1 229382343 229382622 -13281731 - AluSx SINE Alu -32 280 1 3573 165 5 24 chr1 229382710 229382869 -13281484 + L1MB3 LINE L1 5572 5733 -450 2224 95 7 3 chr1 229382869 229383165 -13281188 + AluSc SINE Alu 1 297 -12 3573 165 5 24 chr1 229383165 229383622 -13280731 + L1MB3 LINE L1 5733 6176 -7 346 361 113 11 chr1 229383940 229384214 -13280139 - L2 LINE L2 -38 3234 2933 694 266 79 40 chr1 229386064 229386375 -13277978 - L1MC5 LINE L1 -1017 6791 6562 1719 138 12 98 chr1 229386375 229386539 -13277814 - AluJb SINE Alu -13 299 175 318 26 0 0 chr1 229386539 229386578 -13277775 + (TG)n Simple_repeat Simple_repeat 2 40 0 1719 138 12 98 chr1 229386578 229386740 -13277613 - AluJb SINE Alu -137 175 1 694 266 79 40 chr1 229386740 229386895 -13277458 - L1MC5 LINE L1 -1246 6562 6414 697 264 161 14 chr1 229387056 229387409 -13276944 - L1MC4a LINE L1 -1732 6076 5672 2282 110 7 0 chr1 229387454 229387753 -13276600 - AluSx SINE Alu -11 301 1 320 349 55 0 chr1 229387797 229387906 -13276447 + L2 LINE L2 3157 3271 -1 282 278 152 0 chr1 229387954 229388105 -13276248 + MIR SINE MIR 79 252 -10 189 74 0 0 chr1 229388118 229388145 -13276208 + (CAT)n Simple_repeat Simple_repeat 2 28 0 1170 288 238 19 chr1 229389115 229389937 -13274416 + L2 LINE L2 1712 2713 -601 3046 241 70 51 chr1 229389937 229391177 -13273176 + L1MC4a LINE L1 6104 7367 -441 524 265 74 77 chr1 229391160 229391496 -13272857 + L1MC4 LINE L1 7564 7898 -144 * 582 338 40 49 chr1 229391499 229391827 -13272526 + L2 LINE L2 2909 3233 -39 496 284 46 42 chr1 229391836 229392075 -13272278 + MLT1I LTR MaLR 1 240 -169 279 228 15 125 chr1 229392184 229392226 -13272127 + MLT1I LTR MaLR 289 334 -75 1806 170 13 7 chr1 229392226 229392532 -13271821 + AluJo SINE Alu 1 308 -4 279 228 15 125 chr1 229392532 229392549 -13271804 + MLT1I LTR MaLR 334 351 -58 2177 96 0 4 chr1 229392549 229392857 -13271496 + AluSg SINE Alu 1 307 0 279 228 15 125 chr1 229392857 229392931 -13271422 + MLT1I LTR MaLR 351 409 0 275 302 121 0 chr1 229392968 229393084 -13271269 + L1MC/D LINE L1 5736 5865 -1943 2646 131 6 0 chr1 229394490 229394850 -13269503 + THE1B LTR MaLR 1 362 -2 511 308 59 21 chr1 229394885 229395121 -13269232 + MIR SINE MIR 10 262 0 180 0 0 0 chr1 229395960 229395980 -13268373 + (T)n Simple_repeat Simple_repeat 1 20 0 214 308 15 0 chr1 229397780 229397845 -13266508 - MIR SINE MIR 0 262 197 292 341 36 14 chr1 229398250 229398388 -13265965 + MIR SINE MIR 2 142 -120 432 246 13 20 chr1 229398392 229398481 -13265872 - MIR SINE MIR -62 146 58 2492 71 7 0 chr1 229398481 229398791 -13265562 + AluSp SINE Alu 1 312 -1 432 246 13 20 chr1 229398791 229398828 -13265525 - MIR SINE MIR -150 58 22 29 0 0 0 chr1 229399263 229399292 -13265061 + AT_rich Low_complexity Low_complexity 1 29 0 2129 143 0 6 chr1 229399348 229399662 -13264691 - AluSx SINE Alu 0 312 1 668 244 152 14 chr1 229400835 229401052 -13263301 - MIR SINE MIR -15 247 1 310 312 132 44 chr1 229401141 229401346 -13263007 - MIR SINE MIR -6 256 34 635 288 19 10 chr1 229401370 229401575 -13262778 - MIR SINE MIR -54 208 2 225 108 0 0 chr1 229402732 229402769 -13261584 + (CCG)n Simple_repeat Simple_repeat 2 38 0 668 164 19 19 chr1 229403008 229403167 -13261186 + CT-rich Low_complexity Low_complexity 2 160 0 319 366 32 0 chr1 229404407 229404530 -13259823 - L2 LINE L2 -8 3264 3138 2180 87 25 0 chr1 229405760 229406064 -13258289 + AluSx SINE Alu 1 311 0 474 316 101 60 chr1 229406107 229406541 -13257812 + L2 LINE L2 2198 2649 -665 679 270 115 68 chr1 229406606 229407006 -13257347 - LTR33A LTR ERVL -80 443 25 496 236 85 6 chr1 229407277 229407442 -13256911 - L1MEc LINE L1 -1538 4677 4500 304 313 47 40 chr1 229408364 229408514 -13255839 + HAL1 LINE L1 925 1075 -1432 1072 202 35 16 chr1 229408536 229408794 -13255559 + L1M4 LINE L1 3588 3850 -2296 423 287 84 45 chr1 229408851 229408949 -13255404 + HAL1 LINE L1 1669 1762 -745 1935 128 30 20 chr1 229408949 229409246 -13255107 - AluSx SINE Alu -12 300 1 423 287 84 45 chr1 229409246 229409349 -13255004 + HAL1 LINE L1 1762 1878 -629 1060 257 115 41 chr1 229409364 229410235 -13254118 - L1MEc LINE L1 -2658 3557 2623 311 214 79 48 chr1 229410263 229410389 -13253964 + L1M4 LINE L1 2693 2822 -3324 1651 173 0 4 chr1 229410408 229410674 -13253679 + AluJb SINE Alu 24 288 -24 873 229 40 54 chr1 229410739 229410799 -13253554 - L1MEc LINE L1 -3704 2511 2452 778 63 0 0 chr1 229410799 229410894 -13253459 - L1PA5 LINE L1 -4 6150 6056 873 229 40 54 chr1 229410894 229411234 -13253119 - L1MEc LINE L1 -3763 2452 2167 1597 235 66 48 chr1 229412332 229412590 -13251763 + L1MC4a LINE L1 1945 2197 -4185 1656 189 3 31 chr1 229412590 229412908 -13251445 - AluJb SINE Alu -3 309 1 1597 235 66 48 chr1 229412908 229413550 -13250803 + L1MC4a LINE L1 2197 2856 -3526 619 240 58 0 chr1 229413570 229413724 -13250629 - LTR52 LTR ERVL -23 398 236 378 129 0 29 chr1 229413747 229413817 -13250536 + L1MB8 LINE L1 6111 6178 0 298 315 60 20 chr1 229413960 229414109 -13250244 + L1ME3 LINE L1 6000 6154 -8 251 302 26 79 chr1 229414130 229414319 -13250034 + HAL1b LINE L1 308 486 -862 2608 145 52 0 chr1 229414343 229414751 -13249602 + MSTB1 LTR MaLR 4 432 0 639 321 57 0 chr1 229414798 229415010 -13249343 - MIR SINE MIR -17 245 22 383 264 166 39 chr1 229415040 229415328 -13249025 + HAL1b LINE L1 510 841 -507 2316 115 0 6 chr1 229415328 229415642 -13248711 + AluSx SINE Alu 1 312 0 383 264 166 39 chr1 229415642 229415660 -13248693 + HAL1b LINE L1 841 855 -493 29 28 0 0 chr1 229416267 229416303 -13248050 + AT_rich Low_complexity Low_complexity 1 36 0 1989 129 10 7 chr1 229416413 229416730 -13247623 + AluSx SINE Alu 1 312 0 2071 144 0 6 chr1 229416749 229417062 -13247291 + AluSx SINE Alu 1 311 -1 305 323 52 71 chr1 229417209 229417574 -13246779 + L1MC4a LINE L1 2914 3271 -3111 438 272 134 32 chr1 229417624 229417806 -13246547 + MLT1J2 LTR MaLR 65 227 -223 2131 161 135 13 chr1 229417806 229418191 -13246162 - MSTB1 LTR MaLR 0 432 1 438 272 134 32 chr1 229418191 229418352 -13246001 + MLT1J2 LTR MaLR 227 438 -12 374 218 58 23 chr1 229418757 229418844 -13245509 + MLT1I LTR MaLR 320 409 0 472 294 83 83 chr1 229418879 229418991 -13245362 + L1MC4a LINE L1 3307 3418 -2964 2065 99 3 27 chr1 229418991 229419285 -13245068 + AluSq SINE Alu 1 287 -26 472 294 83 83 chr1 229419285 229419943 -13244410 + L1MC4a LINE L1 3417 4077 -2305 457 230 95 0 chr1 229420193 229420319 -13244034 + L1ME3A LINE L1 5817 5954 -216 369 255 71 0 chr1 229420332 229420430 -13243923 + L1ME3A LINE L1 5998 6102 -68 230 233 12 0 chr1 229420699 229420785 -13243568 + GA-rich Low_complexity Low_complexity 2 88 0 477 213 106 11 chr1 229420837 229421025 -13243328 + L1MC4a LINE L1 5500 5705 -2339 838 320 23 0 chr1 229421052 229421355 -13242998 + L1MC4a LINE L1 5769 6078 -1966 21 71 0 0 chr1 229421560 229421602 -13242751 + AT_rich Low_complexity Low_complexity 1 42 0 650 255 35 79 chr1 229423823 229424141 -13240212 + L2 LINE L2 2969 3272 -41 2223 115 0 7 chr1 229424285 229424612 -13239741 + AluSx SINE Alu 1 312 0 410 276 158 18 chr1 229424883 229425111 -13239242 - MIR SINE MIR 0 262 3 2137 127 9 19 chr1 229425707 229426023 -13238330 - AluSq SINE Alu 0 313 1 1717 195 22 37 chr1 229426851 229427307 -13237046 - Charlie1a DNA MER1_type -3 1452 1004 1275 198 59 97 chr1 229427307 229427504 -13236849 - L1MD2 LINE L1 -41 6318 6140 198 0 0 0 chr1 229427504 229427526 -13236827 + (TG)n Simple_repeat Simple_repeat 2 23 0 1275 198 59 97 chr1 229427526 229427701 -13236652 - L1MD2 LINE L1 -219 6140 5960 2128 175 102 17 chr1 229427701 229428164 -13236189 - Charlie1a DNA MER1_type -410 1045 544 1212 52 13 0 chr1 229428164 229428318 -13236035 - AluY SINE Alu -2 309 154 2394 194 70 25 chr1 229428318 229428446 -13235907 - Charlie1a DNA MER1_type -2211 550 429 2268 115 0 0 chr1 229428446 229428751 -13235602 - AluSx SINE Alu -7 305 1 2394 194 70 25 chr1 229428751 229429148 -13235205 - Charlie1a DNA MER1_type -2332 429 1 1103 209 41 22 chr1 229430217 229430485 -13233868 + MER46C DNA MER2_type 18 290 -48 502 189 0 0 chr1 229430467 229430557 -13233796 + MER2 DNA MER2_type 43 132 -213 * 14768 121 43 18 chr1 229430563 229431752 -13232601 + Tigger1 DNA MER2_type 23 1181 -1237 2221 97 41 0 chr1 229431752 229432042 -13232311 - AluSx SINE Alu -10 302 1 14768 121 43 18 chr1 229432042 229432530 -13231823 + Tigger1 DNA MER2_type 1181 1655 -763 1801 56 4 72 chr1 229432530 229432781 -13231572 + AluY SINE Alu 1 234 -77 14768 121 43 18 chr1 229432781 229433438 -13230915 + Tigger1 DNA MER2_type 1655 2416 -2 497 67 40 0 chr1 229433439 229433514 -13230839 + MER2 DNA MER2_type 129 206 -139 225 204 0 41 chr1 229433556 229433605 -13230748 + MER2 DNA MER2_type 280 326 -19 730 166 0 22 chr1 229433613 229433757 -13230596 - MIR SINE MIR -63 145 60 485 289 103 88 chr1 229434467 229435038 -13229315 - L1M2 LINE L1 -5593 1256 677 21 0 0 0 chr1 229435114 229435135 -13229218 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 229435480 229435521 -13228832 + GC_rich Low_complexity Low_complexity 1 41 0 39 22 0 0 chr1 229435829 229435875 -13228478 + GC_rich Low_complexity Low_complexity 1 46 0 2361 81 0 0 chr1 229436525 229436820 -13227533 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr1 229437584 229437613 -13226740 + AT_rich Low_complexity Low_complexity 1 29 0 31 58 0 0 chr1 229438085 229438137 -13226216 + AT_rich Low_complexity Low_complexity 1 52 0 388 286 93 64 chr1 229439259 229439570 -13224783 - L2 LINE L2 -4 3309 2990 724 162 29 29 chr1 229440616 229440752 -13223601 + AluJo SINE Alu 1 136 -176 2451 55 3 10 chr1 229441009 229441316 -13223037 - AluY SINE Alu -4 307 3 721 164 8 22 chr1 229441323 229441457 -13222896 - FLAM_C SINE Alu 0 133 2 390 319 0 9 chr1 229441464 229441577 -13222776 + MIR SINE MIR 23 134 -128 509 16 0 0 chr1 229442117 229442181 -13222172 - L1PA6 LINE L1 -1 6153 6090 525 330 68 18 chr1 229442577 229442798 -13221555 - MIR SINE MIR -10 252 21 787 205 81 15 chr1 229442844 229443117 -13221236 - Charlie1 DNA MER1_type -53 2708 2418 265 217 0 0 chr1 229443122 229443168 -13221185 - Charlie1 DNA MER1_type -2714 47 2 252 328 82 25 chr1 229443212 229443334 -13221019 - MER5A DNA MER1_type 0 189 61 2105 136 7 0 chr1 229443412 229443731 -13220622 + AluSx SINE Alu 1 321 0 1149 204 9 5 chr1 229444262 229444482 -13219871 - MER58A DNA MER1_type -2 222 2 875 311 92 13 chr1 229445445 229446006 -13218347 - L2 LINE L2 -1 3312 2679 1000 234 117 23 chr1 229446006 229446305 -13218048 - L2 LINE L2 -1037 2277 1951 1350 67 0 0 chr1 229446349 229446527 -13217826 + (TTC)n Simple_repeat Simple_repeat 3 180 0 672 102 0 0 chr1 229446527 229446625 -13217728 + (TCC)n Simple_repeat Simple_repeat 1 98 0 1667 205 0 10 chr1 229446625 229446937 -13217416 - AluJb SINE Alu -3 309 1 236 363 115 9 chr1 229447101 229447214 -13217139 - L2 LINE L2 -2 3270 3146 217 174 0 43 chr1 229449931 229449977 -13214376 + CT-rich Low_complexity Low_complexity 1 44 0 199 337 81 0 chr1 229450016 229450102 -13214251 + MIR SINE MIR 63 155 -107 521 242 47 0 chr1 229450460 229450588 -13213765 - MIR SINE MIR -15 247 114 789 248 119 0 chr1 229450789 229451015 -13213338 + MIR SINE MIR 10 262 0 7140 51 0 0 chr1 229451261 229452917 -13211436 + L1PA6 LINE L1 4518 6173 0 1414 160 0 72 chr1 229454085 229454348 -13210005 - AluJb SINE Alu -68 244 1 2418 143 10 0 chr1 229454661 229455053 -13209300 + L1PA16 LINE L1 5767 6162 -4 2628 229 20 21 chr1 229455124 229455869 -13208484 - L1MB8 LINE L1 -1 6177 5434 343 246 66 49 chr1 229455908 229456030 -13208323 - MIR SINE MIR -61 147 24 229 313 60 12 chr1 229456258 229456341 -13208012 + MER5A DNA MER1_type 61 147 -42 2403 91 0 0 chr1 229456810 229457107 -13207246 + AluSc SINE Alu 1 297 -12 881 170 152 22 chr1 229457229 229457453 -13206900 + MER2 DNA MER2_type 68 320 -25 381 305 0 19 chr1 229457823 229457957 -13206396 - MIR SINE MIR -62 146 30 2029 93 0 22 chr1 229458588 229458866 -13205487 + AluSg SINE Alu 25 296 -14 1643 207 7 0 chr1 229459036 229459340 -13205013 - AluJb SINE Alu -6 306 1 1569 102 45 15 chr1 229459343 229459587 -13204766 - L1MA5A LINE L1 0 6297 6043 2019 135 20 0 chr1 229459587 229459883 -13204470 - AluSx SINE Alu -9 303 2 1569 102 45 15 chr1 229459883 229459903 -13204450 - L1MA5A LINE L1 -254 6043 6025 185 323 49 61 chr1 229463369 229463533 -13200820 + L2 LINE L2 3132 3293 -20 183 250 71 0 chr1 229463491 229463547 -13200806 - L2 LINE L2 -1379 1935 1876 * 203 154 0 19 chr1 229463592 229463644 -13200709 + (TTA)n Simple_repeat Simple_repeat 2 52 0 343 313 39 22 chr1 229463720 229463899 -13200454 + L1MC/D LINE L1 5616 5797 -2011 1394 117 22 4 chr1 229463911 229464142 -13200211 - MER6 DNA MER2_type 0 865 631 658 101 0 0 chr1 229464144 229464233 -13200120 + AluS SINE Alu 3 91 -222 2276 69 0 0 chr1 229464277 229464593 -13199760 + L1PA5 LINE L1 5862 6177 0 897 195 0 13 chr1 229465800 229465959 -13198394 + AluJb SINE Alu 137 293 -19 2161 95 0 11 chr1 229465981 229466266 -13198087 - AluSx SINE Alu -30 282 1 2211 114 0 13 chr1 229470571 229470878 -13193475 + AluSq SINE Alu 3 305 -8 2069 138 3 25 chr1 229470878 229471196 -13193157 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr1 229472201 229472222 -13192131 + AT_rich Low_complexity Low_complexity 1 21 0 1691 159 9 3 chr1 229472337 229472820 -13191533 + L1MA5 LINE L1 5050 5535 -744 4241 162 3 9 chr1 229472889 229473647 -13190706 + L1MA5 LINE L1 5542 6294 -6 2263 113 3 0 chr1 229474731 229475032 -13189321 + AluSq SINE Alu 1 302 -11 1951 158 0 10 chr1 229475524 229475822 -13188531 + AluJb SINE Alu 1 295 -17 191 214 258 45 chr1 229475974 229476063 -13188290 - L2 LINE L2 -10 3262 3155 479 297 96 76 chr1 229476070 229476320 -13188033 - L2 LINE L2 -4 3268 3024 1497 107 4 64 chr1 229476320 229476554 -13187799 + AluSg/x SINE Alu 72 291 -19 479 297 96 76 chr1 229476554 229476686 -13187667 - L2 LINE L2 -248 3024 2896 1064 219 88 22 chr1 229476686 229477005 -13187348 + MER58B DNA MER1_type 1 340 -1 479 297 96 76 chr1 229477005 229477309 -13187044 - L2 LINE L2 -376 2896 2554 504 345 26 26 chr1 229477321 229477547 -13186806 - MIR SINE MIR -10 252 27 696 219 70 27 chr1 229477749 229478005 -13186348 - LTR37B LTR ERV1 -2 466 200 205 279 47 35 chr1 229478389 229478475 -13185878 - MIR SINE MIR -64 144 58 2063 133 4 0 chr1 229478505 229478811 -13185542 - AluSx SINE Alu 0 309 3 375 23 0 0 chr1 229478903 229478947 -13185406 + (TG)n Simple_repeat Simple_repeat 1 44 0 230 288 176 24 chr1 229480840 229480965 -13183388 - MIR SINE MIR -70 192 49 229 330 0 11 chr1 229481303 229481339 -13183014 + (CATATA)n Simple_repeat Simple_repeat 3 38 -51 2267 83 17 0 chr1 229481339 229481627 -13182726 - AluSg SINE Alu -17 293 1 229 330 0 11 chr1 229481627 229481678 -13182675 + (CATATA)n Simple_repeat Simple_repeat 38 89 0 32 57 0 0 chr1 229481888 229481941 -13182412 + AT_rich Low_complexity Low_complexity 1 53 0 2134 102 0 7 chr1 229482102 229482395 -13181958 - AluSg SINE Alu -19 291 1 1014 169 6 23 chr1 229484082 229484285 -13180068 + AluSg/x SINE Alu 114 310 0 3467 129 29 2 chr1 229484761 229485274 -13179079 - MER1A DNA MER1_type 0 527 1 767 198 132 6 chr1 229485474 229485641 -13178712 - MER5A DNA MER1_type -1 188 1 21 36 0 0 chr1 229485978 229486006 -13178347 + AT_rich Low_complexity Low_complexity 1 28 0 273 325 147 25 chr1 229487081 229487244 -13177109 - MIR3 SINE MIR -10 198 16 1882 154 18 38 chr1 229487293 229487688 -13176665 - MLT1B LTR MaLR -3 387 1 254 292 34 67 chr1 229487949 229488038 -13176315 - MIR SINE MIR -109 99 14 548 227 127 13 chr1 229488305 229488455 -13175898 + MIR SINE MIR 2 168 -94 604 162 17 51 chr1 229489208 229489325 -13175028 + FAM SINE Alu 1 113 -72 284 207 0 11 chr1 229490225 229490312 -13174041 + T-rich Low_complexity Low_complexity 4 89 0 183 267 0 0 chr1 229491807 229491882 -13172471 + (TG)n Simple_repeat Simple_repeat 2 76 0 2263 115 0 3 chr1 229492894 229493199 -13171154 + AluSc SINE Alu 1 304 -5 2031 202 24 15 chr1 229493447 229493902 -13170451 - MER65C LTR ERV1 -2 459 1 1582 191 67 9 chr1 229494037 229494382 -13169971 + MLT1A1 LTR MaLR 1 365 0 1219 88 0 0 chr1 229494566 229494725 -13169628 + AluY SINE Alu 143 301 -10 3205 163 41 5 chr1 229494774 229495357 -13168996 + MER6A DNA MER2_type 2 605 0 755 244 11 22 chr1 229495508 229495688 -13168665 + MER45A DNA AcHobo 1 178 0 1740 249 69 7 chr1 229495868 229496549 -13167804 - L1M4 LINE L1 -4835 2020 1346 3513 188 61 57 chr1 229496549 229497357 -13166996 + MER21B LTR ERV1 1 811 -52 366 188 0 0 chr1 229497403 229497472 -13166881 + Tigger2 DNA MER2_type 1 69 -2649 * 2675 142 9 5 chr1 229497462 229497906 -13166447 + Tigger2 DNA MER2_type 2273 2718 0 4144 202 119 67 chr1 229497906 229499172 -13165181 - L1M4 LINE L1 -5508 1351 20 431 247 101 46 chr1 229499277 229499496 -13164857 + L2 LINE L2 2196 2426 -888 292 214 0 0 chr1 229499604 229499660 -13164693 - MIR SINE MIR -112 150 95 635 150 17 0 chr1 229499703 229499823 -13164530 + CT-rich Low_complexity Low_complexity 6 127 0 1518 113 8 42 chr1 229499823 229500154 -13164199 + AluSg/x SINE Alu 71 393 0 655 160 0 0 chr1 229500155 229500274 -13164079 - MLT2D LTR ERVL -66 348 230 * 1100 177 68 55 chr1 229500266 229500568 -13163785 - MLT1B LTR MaLR -80 387 3 226 185 0 56 chr1 229501673 229501727 -13162626 + L1MC/D LINE L1 5439 5489 -844 5133 84 0 25 chr1 229502719 229503425 -13160928 - LTR12 LTR ERV1 0 688 1 463 230 49 3 chr1 229503517 229503831 -13160522 + (CA)n Simple_repeat Simple_repeat 1 328 0 2291 110 3 0 chr1 229504209 229504517 -13159836 - AluSc SINE Alu 0 309 1 21 0 0 0 chr1 229504842 229504863 -13159490 + AT_rich Low_complexity Low_complexity 1 21 0 2409 70 0 3 chr1 229504891 229505191 -13159162 - AluY SINE Alu -10 301 3 302 255 132 43 chr1 229505349 229505584 -13158769 - L1ME4a LINE L1 -94 6027 5772 618 311 47 21 chr1 229505647 229505882 -13158471 + MIR SINE MIR 22 262 0 773 281 40 26 chr1 229507525 229507949 -13156404 + L1MEc LINE L1 586 1015 -5381 2152 109 0 20 chr1 229507958 229508260 -13156093 + AluSp SINE Alu 1 296 -17 4448 177 20 22 chr1 229508264 229508468 -13155885 + L1MB3 LINE L1 5174 5377 -806 1562 167 68 14 chr1 229508468 229508761 -13155592 + AluJb SINE Alu 1 309 -3 4448 177 20 22 chr1 229508761 229509564 -13154789 + L1MB3 LINE L1 5377 6183 0 345 285 0 8 chr1 229509572 229509702 -13154651 + L1MEc LINE L1 1023 1151 -5245 911 247 66 80 chr1 229509798 229510515 -13153838 + L1MEc LINE L1 1615 2321 -4075 245 212 6 164 chr1 229510562 229510620 -13153733 + L1MEc LINE L1 2386 2451 -3764 2059 107 0 48 chr1 229510620 229510930 -13153423 + AluSq SINE Alu 1 295 -18 245 212 6 164 chr1 229510930 229511036 -13153317 + L1MEc LINE L1 2451 2524 -3691 2338 135 44 2 chr1 229511048 229511455 -13152898 + MSTB1 LTR MaLR 9 432 0 2876 235 107 35 chr1 229511461 229512765 -13151588 + L1MEc LINE L1 2532 3930 -2285 2432 208 62 38 chr1 229562800 229563352 -13101001 + MER21B LTR ERV1 298 862 -1 1154 119 0 0 chr1 229564393 229564572 -13099781 + AluSg/x SINE Alu 131 309 0 388 292 15 36 chr1 229564770 229564907 -13099446 - MLT1J LTR MaLR -91 420 287 1578 164 19 42 chr1 229566087 229566397 -13097956 - AluJo SINE Alu -9 303 1 620 305 139 6 chr1 229566464 229567030 -13097323 + MER115 DNA AcHobo 1 673 -20 2253 112 3 13 chr1 229567141 229567455 -13096898 - AluSq SINE Alu -2 311 1 248 293 93 33 chr1 229568648 229568798 -13095555 + L2 LINE L2 3034 3192 -121 1647 152 49 26 chr1 229568875 229569223 -13095130 - L1MB8 LINE L1 -5 6173 5818 1508 191 77 31 chr1 229569224 229569549 -13094804 + MER2 DNA MER2_type 6 345 0 2605 180 74 0 chr1 229569555 229570128 -13094225 - L1MB8 LINE L1 -384 5800 5188 * 6253 127 37 1 chr1 229570124 229571311 -13093042 - L1PA11 LINE L1 0 6174 4942 232 270 48 0 chr1 229571317 229571380 -13092973 + L2 LINE L2 3246 3311 -2 744 194 47 33 chr1 229571399 229571662 -13092691 - L1M LINE L1 -743 5403 5156 1653 264 43 63 chr1 229572628 229572862 -13091491 - L1M4 LINE L1 -2368 3778 3541 2305 92 7 0 chr1 229572862 229573157 -13091196 - AluSg SINE Alu -13 297 1 1653 264 43 63 chr1 229573157 229573790 -13090563 - L1M4 LINE L1 -2605 3541 2929 180 77 0 0 chr1 229573999 229574025 -13090328 + (TG)n Simple_repeat Simple_repeat 2 27 0 652 337 56 4 chr1 229574105 229574375 -13089978 + LTR33 LTR ERVL 1 284 -237 274 260 20 20 chr1 229574467 229574559 -13089794 + LTR33 LTR ERVL 401 495 -26 213 65 0 0 chr1 229574559 229574590 -13089763 + (TA)n Simple_repeat Simple_repeat 2 32 0 1414 202 79 48 chr1 229574907 229575523 -13088830 - L1ME LINE L1 -437 5727 5107 324 85 21 0 chr1 229575570 229575617 -13088736 - MLT2D LTR ERVL 0 414 367 224 225 0 0 chr1 229575617 229575657 -13088696 + (TG)n Simple_repeat Simple_repeat 2 41 0 257 224 0 0 chr1 229575658 229575734 -13088619 - L1ME LINE L1 -1704 4442 4367 231 88 0 0 chr1 229575754 229575788 -13088565 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 669 167 35 0 chr1 229575860 229576034 -13088319 + (TA)n Simple_repeat Simple_repeat 1 180 0 604 156 22 28 chr1 229576050 229576230 -13088123 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 * 669 166 29 6 chr1 229576215 229576390 -13087963 + (TA)n Simple_repeat Simple_repeat 2 180 0 1991 132 57 47 chr1 229576395 229576773 -13087580 - MLT2D LTR ERVL -40 480 1 428 276 17 0 chr1 229576775 229576891 -13087462 - L1M4 LINE L1 -1074 5072 4955 819 103 226 7 chr1 229576892 229577038 -13087315 - AluSq SINE Alu -14 299 122 2352 59 16 3 chr1 229577153 229577460 -13086893 - L1PA5 LINE L1 -3 6151 5841 2315 103 7 0 chr1 229578401 229578702 -13085651 - AluSx SINE Alu -9 303 1 25 0 0 0 chr1 229578903 229578928 -13085425 + AT_rich Low_complexity Low_complexity 1 25 0 2480 38 0 17 chr1 229579917 229580231 -13084122 + AluY SINE Alu 1 309 0 1838 193 30 25 chr1 229580544 229580907 -13083446 - MLT1A1 LTR MaLR 0 365 1 2234 112 0 19 chr1 229581131 229581445 -13082908 - AluSx SINE Alu -4 308 1 202 262 0 0 chr1 229581583 229581625 -13082728 + CT-rich Low_complexity Low_complexity 4 45 0 254 284 27 14 chr1 229581742 229581816 -13082537 - MLT1K LTR MaLR -237 351 277 6439 192 73 18 chr1 229582568 229584054 -13080299 + MER52A LTR ERV1 46 1754 -1 1337 177 126 103 chr1 229585434 229586035 -13078318 + LTR50 LTR ERVL 94 795 0 1070 299 34 16 chr1 229586036 229586320 -13078033 + L2 LINE L2 2398 2694 -620 2225 104 0 32 chr1 229586320 229586628 -13077725 - AluY SINE Alu -13 298 1 1070 299 34 16 chr1 229586628 229586785 -13077568 + L2 LINE L2 2694 2847 -467 1970 186 45 111 chr1 229587561 229588154 -13076199 + MLT2B3 LTR ERVL 1 554 0 1036 274 27 32 chr1 229588410 229588737 -13075616 - L1ME LINE L1 -5644 426 100 2346 106 0 0 chr1 229588737 229589039 -13075314 - AluSg SINE Alu -8 302 1 1036 274 27 32 chr1 229589039 229589083 -13075270 - L1ME LINE L1 -5970 100 57 636 286 28 0 chr1 229589115 229589297 -13075056 + MIR SINE MIR 34 220 -42 21 36 0 0 chr1 229589524 229589552 -13074801 + AT_rich Low_complexity Low_complexity 1 28 0 456 274 55 43 chr1 229590011 229590266 -13074087 - MLT1J LTR MaLR -36 475 218 1226 262 70 55 chr1 229590510 229591093 -13073260 + Charlie2 DNA MER1_type 35 626 -2156 421 231 15 15 chr1 229591201 229591335 -13073018 + Charlie2a DNA MER1_type 1468 1601 -1261 1279 266 69 13 chr1 229591359 229591907 -13072446 + L1ME2 LINE L1 3626 4204 -1942 434 261 14 7 chr1 229591919 229592061 -13072292 + L1ME2 LINE L1 4734 4876 -1270 4505 141 26 5 chr1 229592070 229592850 -13071503 + L1PB4 LINE L1 5361 6156 0 1061 255 50 64 chr1 229592851 229593670 -13070683 + L1ME2 LINE L1 4890 5655 -509 1761 182 10 7 chr1 229593670 229593977 -13070376 + AluJo SINE Alu 1 308 -4 1061 255 50 64 chr1 229593977 229594479 -13069874 + L1ME2 LINE L1 5655 6162 -2 332 333 49 31 chr1 229594541 229594703 -13069650 - MIR SINE MIR -30 232 68 1064 264 133 59 chr1 229596632 229597226 -13067127 + MER115 DNA AcHobo 24 4002 -29 1895 228 168 6 chr1 229597249 229597784 -13066569 + LTR26E LTR ERV1 1 622 0 330 283 60 65 chr1 229597874 229597966 -13066387 - L2 LINE L2 -612 2702 2611 2781 115 61 31 chr1 229597966 229598444 -13065909 - LTR22B LTR ERVK 0 492 1 330 283 60 65 chr1 229598444 229598535 -13065818 - L2 LINE L2 -703 2611 2520 788 206 41 6 chr1 229598724 229598894 -13065459 - MLT1D LTR MaLR -28 477 302 1567 193 3 14 chr1 229598902 229599224 -13065129 - AluJo SINE Alu 0 319 1 680 169 23 8 chr1 229599227 229599357 -13064996 - AluJb SINE Alu -180 132 1 579 223 76 83 chr1 229599360 229599661 -13064692 - MLT1D LTR MaLR -206 299 1 894 241 33 5 chr1 229601577 229601789 -13062564 - MER20 DNA MER1_type 0 219 2 3968 133 5 22 chr1 229601853 229602379 -13061974 - LTR9 LTR ERV1 0 612 97 2149 110 0 3 chr1 229602379 229602671 -13061682 + AluSg1 SINE Alu 1 291 -18 3968 133 5 22 chr1 229602671 229602767 -13061586 - LTR9 LTR ERV1 -515 97 1 515 284 87 21 chr1 229604243 229604771 -13059582 + L1ME2 LINE L1 828 1390 -4982 1493 209 50 9 chr1 229604786 229605126 -13059227 + MLT1A1 LTR MaLR 12 365 0 684 268 98 24 chr1 229605128 229605733 -13058620 + L1ME2 LINE L1 1283 2091 -4472 1799 244 66 43 chr1 229605740 229607074 -13057279 + L1ME2 LINE L1 4757 6135 -265 679 204 112 108 chr1 229607075 229607282 -13057071 - MER4C LTR ERV1 0 685 387 2206 163 65 0 chr1 229607282 229607682 -13056671 - MSTB LTR MaLR 0 426 1 679 204 112 108 chr1 229607682 229607790 -13056563 - MER4C LTR ERV1 -298 387 281 512 171 16 187 chr1 229607800 229608057 -13056296 - MER4A LTR ERV1 -315 349 137 483 146 36 18 chr1 229608142 229608252 -13056101 - MER4C LTR ERV1 -349 116 5 351 186 0 0 chr1 229608256 229608326 -13056027 + L1ME2 LINE L1 6134 6203 -197 * 1765 127 7 7 chr1 229608319 229608626 -13055727 + L1MA3 LINE L1 5892 6198 -107 301 231 172 35 chr1 229608639 229608769 -13055584 + L1ME2 LINE L1 6199 6359 -41 2146 116 3 0 chr1 229608769 229609061 -13055292 - AluSq SINE Alu -20 293 1 301 231 172 35 chr1 229609061 229609099 -13055254 + L1ME2 LINE L1 6359 6390 -10 3356 138 35 8 chr1 229609871 229610472 -13053881 + LTR29 LTR ERV1 3 619 -3 486 277 34 14 chr1 229611019 229611167 -13053186 + MIR SINE MIR 29 179 -83 180 207 0 0 chr1 229611164 229611193 -13053160 + L2 LINE L2 3227 3255 -17 * 2098 135 0 0 chr1 229611977 229612274 -13052079 - AluSx SINE Alu -15 297 1 1638 129 4 4 chr1 229613246 229613487 -13050866 + AluSg1 SINE Alu 50 290 -19 2139 177 65 13 chr1 229613703 229614177 -13050176 + MER34B LTR ERV1 6 504 -61 193 386 167 0 chr1 229614250 229614364 -13049989 + L2 LINE L2 2917 3049 -223 243 288 125 12 chr1 229615637 229615717 -13048636 - MIR SINE MIR -84 124 36 1605 185 25 62 chr1 229616671 229617028 -13047325 + MLT1B LTR MaLR 1 343 -47 3943 112 25 3 chr1 229617028 229617617 -13046736 + LTR43 LTR ERV1 1 602 0 1605 185 25 62 chr1 229617617 229617664 -13046689 + MLT1B LTR MaLR 343 390 0 2067 120 16 13 chr1 229617838 229618147 -13046206 + AluSg SINE Alu 1 310 0 321 182 30 0 chr1 229618214 229618280 -13046073 - MIR SINE MIR 0 262 195 1706 174 10 17 chr1 229618297 229618590 -13045763 - AluJb SINE Alu -21 291 1 1931 206 91 25 chr1 229618598 229619112 -13045241 - MER67C LTR ERV1 -84 626 79 189 0 0 0 chr1 229619112 229619133 -13045220 + (A)n Simple_repeat Simple_repeat 1 21 0 341 329 79 36 chr1 229619222 229619526 -13044827 + L1ME LINE L1 5266 5582 -539 2010 171 3 19 chr1 229619569 229619937 -13044416 + MLT1A1 LTR MaLR 4 365 0 1649 142 24 20 chr1 229620157 229620411 -13043942 + AluJo SINE Alu 1 255 -57 514 153 61 41 chr1 229620414 229620512 -13043841 + AluJo/FRAM SINE Alu 182 281 -31 263 289 36 0 chr1 229620940 229621023 -13043330 - MIR3 SINE MIR -13 195 110 1901 118 4 0 chr1 229621746 229622000 -13042353 - AluSx SINE Alu -57 255 1 307 291 117 0 chr1 229622172 229622275 -13042078 - MIR SINE MIR -64 144 30 2250 100 0 10 chr1 229622343 229622667 -13041686 - AluSx SINE Alu 0 312 1 806 221 19 14 chr1 229622809 229623017 -13041336 - MER3 DNA MER1_type 0 209 1 2142 141 0 6 chr1 229623353 229623666 -13040687 - AluSx SINE Alu -1 311 1 371 274 74 52 chr1 229623701 229624026 -13040327 + HAL1 LINE L1 94 425 -2082 4253 171 17 16 chr1 229624873 229625746 -13038607 - L1MB2 LINE L1 -2 6169 5296 207 69 0 0 chr1 229625759 229625788 -13038565 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 867 165 0 0 chr1 229625788 229625921 -13038432 - AluJb SINE Alu -36 276 144 2156 137 41 16 chr1 229625927 229626293 -13038060 + THE1C LTR MaLR 1 375 0 589 250 8 0 chr1 229626309 229626437 -13037916 - FLAM_C SINE Alu -3 130 2 1646 213 21 21 chr1 229626441 229626916 -13037437 - L1MB2 LINE L1 -846 5300 4826 810 143 8 0 chr1 229627450 229627569 -13036784 + FLAM_C SINE Alu 1 120 -23 1790 282 91 41 chr1 229627578 229628290 -13036063 + L1MA5 LINE L1 52 799 -6410 5530 206 51 15 chr1 229628382 229631280 -13033073 + L1MA5 LINE L1 1719 4723 -2485 5861 166 45 29 chr1 229631381 229633457 -13030896 + L1MA5 LINE L1 5131 7359 -3 491 239 72 18 chr1 229633614 229633781 -13030572 - MLT1J LTR MaLR -8 503 328 212 278 70 72 chr1 229634489 229634882 -13029471 + L2 LINE L2 2702 3087 -185 504 184 101 114 chr1 229635045 229635273 -13029080 + MER46C DNA MER2_type 5 229 -109 2169 78 23 29 chr1 229635538 229635845 -13028508 - AluSq SINE Alu -8 305 1 255 400 38 0 chr1 229636552 229636657 -13027696 - L2 LINE L2 -1 3271 3163 635 170 22 22 chr1 229637342 229637477 -13026876 + Tigger1 DNA MER2_type 1 135 -2283 669 262 144 9 chr1 229638239 229638468 -13025885 - MIR SINE MIR 0 262 3 682 107 48 0 chr1 229638483 229638586 -13025767 + AluJo SINE Alu 29 136 -176 29 28 0 0 chr1 229638586 229638622 -13025731 + AT_rich Low_complexity Low_complexity 1 36 0 354 231 0 33 chr1 229639783 229639874 -13024479 + CT-rich Low_complexity Low_complexity 4 91 0 1947 124 0 0 chr1 229639876 229640142 -13024211 - AluSx SINE Alu -32 280 15 1689 189 22 70 chr1 229640400 229640714 -13023639 - L1MB7 LINE L1 -23 6161 5873 1730 107 20 0 chr1 229640714 229640966 -13023387 - L1PA12 LINE L1 0 6168 5912 1689 189 22 70 chr1 229640966 229641095 -13023258 - L1MB7 LINE L1 -311 5873 5739 980 209 127 11 chr1 229641131 229641399 -13022954 - MLT1F1 LTR MaLR 0 567 269 835 257 33 5 chr1 229641411 229641625 -13022728 - MLT1D-int LTR MaLR -1 1370 1151 1177 97 11 0 chr1 229641653 229641828 -13022525 - AluY SINE Alu 0 311 135 2504 231 40 106 chr1 229641843 229642881 -13021472 - MLT1D-int LTR MaLR -231 1140 172 925 248 90 3 chr1 229642906 229643241 -13021112 + L1M4 LINE L1 3613 3976 -2170 572 213 0 0 chr1 229643245 229643367 -13020986 - MLT1D-int LTR MaLR -1226 145 24 2138 237 22 6 chr1 229643426 229643923 -13020430 - MLT1D LTR MaLR 0 505 1 1540 246 96 23 chr1 229643933 229644708 -13019645 - L1M4 LINE L1 -1717 4429 3599 1368 199 65 28 chr1 229644820 229645111 -13019242 - AluJo SINE Alu -10 302 1 263 230 14 0 chr1 229645863 229645937 -13018416 - L1M4 LINE L1 -1956 4190 4116 1582 157 56 59 chr1 229646216 229646591 -13017762 - THE1C LTR MaLR -1 374 1 302 373 0 0 chr1 229646856 229646958 -13017395 - L1M4 LINE L1 -2295 3851 3750 2156 240 53 13 chr1 229646974 229647657 -13016696 - L1MC4a LINE L1 -17 7791 7082 773 238 87 40 chr1 229647675 229647973 -13016380 + MLT1-int LTR MaLR 331 642 -729 378 342 21 26 chr1 229648136 229648326 -13016027 + MLT1-int LTR MaLR 692 880 -491 480 147 0 0 chr1 229648434 229648509 -13015844 + AluJ/FRAM SINE Alu 227 301 -11 484 269 80 77 chr1 229648665 229648689 -13015664 + MLT1-int LTR MaLR 985 1007 -364 2042 167 81 8 chr1 229648689 229649084 -13015269 - MSTB LTR MaLR -2 424 1 484 269 80 77 chr1 229649084 229649423 -13014930 + MLT1-int LTR MaLR 1007 1349 -22 23 33 0 0 chr1 229649588 229649618 -13014735 + AT_rich Low_complexity Low_complexity 1 30 0 1459 184 25 39 chr1 229649851 229650134 -13014219 - AluJo SINE Alu -31 281 3 393 212 176 48 chr1 229650191 229650356 -13013997 + MER5A DNA MER1_type 4 189 0 230 273 15 0 chr1 229650358 229650424 -13013929 + MLT1J2 LTR MaLR 259 325 -125 1744 213 107 83 chr1 229650561 229651280 -13013073 + LTR1B LTR ERV1 85 820 -6 845 148 16 0 chr1 229651341 229651469 -13012884 + AluSg/x SINE Alu 163 292 -18 21 0 0 0 chr1 229651469 229651490 -13012863 + AT_rich Low_complexity Low_complexity 1 21 0 410 318 70 30 chr1 229651811 229652110 -13012243 + HAL1 LINE L1 875 1185 -1322 1293 215 26 0 chr1 229652152 229652492 -13011861 - L1PB4 LINE L1 -1012 5134 4786 * 4381 172 15 15 chr1 229652487 229653468 -13010885 + L1PB4 LINE L1 5163 6142 -14 227 246 115 39 chr1 229653486 229653616 -13010737 + HAL1 LINE L1 1230 1369 -1138 537 295 68 24 chr1 229653632 229653971 -13010382 + HAL1 LINE L1 1416 1769 -738 334 312 38 32 chr1 229653987 229654144 -13010209 + HAL1 LINE L1 1816 1973 -534 247 280 0 0 chr1 229654352 229654427 -13009926 + HAL1 LINE L1 2078 2152 -355 296 279 0 0 chr1 229654522 229654583 -13009770 - L2 LINE L2 -23 3290 3230 249 208 20 40 chr1 229655296 229655397 -13008956 + MER107 DNA MER1_type 76 174 -23 5046 193 35 25 chr1 229655611 229657808 -13006545 + HERVL74 LTR ERVL 1041 3332 -2353 658 164 131 0 chr1 229657828 229657950 -13006403 + HERVL74 LTR ERVL 3506 3643 -2042 800 175 13 0 chr1 229657962 229658116 -13006237 + HERVL74 LTR ERVL 3913 4068 -1617 617 184 0 0 chr1 229658109 229658212 -13006141 + HERVL74 LTR ERVL 4586 4688 -997 * 567 289 45 6 chr1 229658219 229658375 -13005978 + HERVL74 LTR ERVL 4641 4802 -883 767 206 0 0 chr1 229658494 229658625 -13005728 - FLAM_C SINE Alu -10 133 3 2297 209 25 66 chr1 229658627 229659501 -13004852 - L1M4 LINE L1 -942 5204 4367 195 100 0 0 chr1 229659521 229659551 -13004802 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 432 256 0 0 chr1 229659854 229659971 -13004382 - L1ME2 LINE L1 -59 6105 5989 1814 219 77 18 chr1 229659977 229660610 -13003743 - L1ME2 LINE L1 -314 5850 5181 28 71 0 0 chr1 229660655 229660711 -13003642 + AT_rich Low_complexity Low_complexity 1 56 0 303 85 21 0 chr1 229660756 229660803 -13003550 - MLT2D LTR ERVL 0 414 367 224 225 0 0 chr1 229660803 229660843 -13003510 + (TG)n Simple_repeat Simple_repeat 2 41 0 233 224 0 0 chr1 229660844 229660920 -13003433 - L1ME2 LINE L1 -1704 4442 4367 231 88 0 0 chr1 229660940 229660974 -13003379 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 556 172 35 0 chr1 229661036 229661181 -13003172 + (TA)n Simple_repeat Simple_repeat 1 150 0 302 261 57 11 chr1 229661181 229661269 -13003084 + L1MC4 LINE L1 6613 6704 -1338 303 239 68 11 chr1 229661294 229661382 -13002971 + L1MC4 LINE L1 6612 6704 -1338 233 167 19 0 chr1 229661382 229661436 -13002917 + (TA)n Simple_repeat Simple_repeat 1 55 0 1172 301 61 41 chr1 229661540 229661753 -13002600 + L2 LINE L2 2469 2676 -637 1294 242 129 28 chr1 229661753 229662211 -13002142 - MLT1D LTR MaLR -1 504 1 1172 301 61 41 chr1 229662211 229662256 -13002097 + L2 LINE L2 2676 2719 -594 2325 105 0 0 chr1 229662256 229662552 -13001801 - AluY SINE Alu -15 296 1 1172 301 61 41 chr1 229662552 229663117 -13001236 + L2 LINE L2 2719 3313 0 965 218 133 56 chr1 229663124 229663463 -13000890 + MLT1A1 LTR MaLR 1 365 0 2019 120 3 42 chr1 229664384 229664693 -12999660 + AluSx SINE Alu 1 297 -15 2110 181 71 26 chr1 229665284 229665819 -12998534 + MER34B LTR ERV1 2 560 -5 1837 171 3 7 chr1 229666458 229666763 -12997590 + AluSx SINE Alu 1 304 -8 43 47 0 0 chr1 229669095 229669159 -12995194 + AT_rich Low_complexity Low_complexity 1 64 0 2366 86 0 3 chr1 229670246 229670550 -12993803 - AluY SINE Alu -8 303 1 1619 183 25 62 chr1 229670724 229670771 -12993582 - MLT1B LTR MaLR 0 390 343 3943 112 25 3 chr1 229670771 229671360 -12992993 - LTR43 LTR ERV1 0 602 1 1619 183 25 62 chr1 229671360 229671717 -12992636 - MLT1B LTR MaLR -47 343 1 243 288 125 12 chr1 229672671 229672751 -12991602 + MIR SINE MIR 36 124 -84 193 386 167 0 chr1 229674024 229674138 -12990215 - L2 LINE L2 -223 3049 2917 2139 177 65 13 chr1 229674211 229674685 -12989668 - MER34B LTR ERV1 -61 504 6 1647 128 4 4 chr1 229674901 229675143 -12989210 - AluSg1 SINE Alu -18 291 50 2098 135 0 0 chr1 229676115 229676412 -12987941 + AluSx SINE Alu 1 297 -15 180 207 0 0 chr1 229677196 229677225 -12987128 - L2 LINE L2 -17 3255 3227 * 486 277 34 14 chr1 229677222 229677370 -12986983 - MIR SINE MIR -83 179 29 3421 133 35 8 chr1 229677917 229678518 -12985835 - LTR29 LTR ERV1 -3 619 3 301 231 172 35 chr1 229679290 229679328 -12985025 - L1ME2 LINE L1 -10 6390 6359 2146 116 3 0 chr1 229679328 229679620 -12984733 + AluSq SINE Alu 1 293 -20 301 231 172 35 chr1 229679620 229679750 -12984603 - L1ME2 LINE L1 -41 6359 6199 1765 127 7 7 chr1 229679763 229680070 -12984283 - L1MA3 LINE L1 -107 6198 5892 351 186 0 0 chr1 229680063 229680133 -12984220 - L1ME2 LINE L1 -197 6203 6134 * 483 146 36 18 chr1 229680137 229680247 -12984106 + MER4C LTR ERV1 5 116 -349 512 171 16 187 chr1 229680332 229680589 -12983764 + MER4A LTR ERV1 137 349 -315 679 204 112 108 chr1 229680599 229680707 -12983646 + MER4C LTR ERV1 281 261 -204 2206 163 65 0 chr1 229680707 229681107 -12983246 + MSTB LTR MaLR 1 426 0 679 204 112 108 chr1 229681107 229681314 -12983039 + MER4C LTR ERV1 260 465 0 1799 243 66 43 chr1 229681315 229682649 -12981704 - L1ME2 LINE L1 -265 6135 4757 691 266 98 26 chr1 229682656 229683262 -12981091 - L1ME2 LINE L1 -4472 2091 1283 1493 209 50 9 chr1 229683264 229683604 -12980749 - MLT1A1 LTR MaLR 0 365 12 515 284 87 21 chr1 229683619 229684147 -12980206 - L1ME2 LINE L1 -4982 1390 828 257 243 0 29 chr1 229684861 229684931 -12979422 + MER63 DNA MER1_type 994 1061 0 6741 108 16 37 chr1 229685009 229686104 -12978249 + MER11C LTR ERVK 1 1071 0 396 183 0 0 chr1 229686311 229686382 -12977971 - MER63 DNA MER1_type -310 751 681 24 0 0 0 chr1 229686950 229686974 -12977379 + AT_rich Low_complexity Low_complexity 1 24 0 716 69 20 0 chr1 229687253 229687355 -12976998 + L1PA10 LINE L1 6064 6167 -1 1013 183 179 7 chr1 229687961 229688251 -12976102 - MER2 DNA MER2_type -3 341 2 861 223 105 0 chr1 229688958 229689187 -12975166 + MSTB1 LTR MaLR 177 429 -3 492 304 96 9 chr1 229689246 229689466 -12974887 + MIR SINE MIR 15 253 -9 7545 161 16 2 chr1 229689527 229691695 -12972658 - L1PA13 LINE L1 -5 6158 3969 2316 99 7 0 chr1 229692287 229692591 -12971762 - AluSc SINE Alu -3 306 1 206 0 69 0 chr1 229692647 229692676 -12971677 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 201 225 0 0 chr1 229694571 229694611 -12969742 + L2 LINE L2 3221 3260 -12 225 94 0 0 chr1 229694612 229694644 -12969709 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 2180 109 0 0 chr1 229695067 229695350 -12969003 - AluSq SINE Alu -28 285 3 189 0 0 0 chr1 229695452 229695473 -12968880 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 1775 166 3 17 chr1 229695473 229695764 -12968589 - AluJb SINE Alu -23 289 1 319 251 3 14 chr1 229695778 229695859 -12968494 - MIR SINE MIR -67 141 72 2233 110 0 0 chr1 229696502 229696792 -12967561 + AluSq SINE Alu 3 292 -21 1841 154 0 18 chr1 229697069 229697354 -12966999 - AluJb SINE Alu -32 280 1 1600 71 0 5 chr1 229697450 229697660 -12966693 - L1PA5 LINE L1 -6 6148 5940 333 0 0 0 chr1 229697808 229697845 -12966508 + (TG)n Simple_repeat Simple_repeat 2 38 0 274 297 48 14 chr1 229697950 229698095 -12966258 + L1MC/D LINE L1 5609 5758 -2050 26 30 0 0 chr1 229698245 229698278 -12966075 + AT_rich Low_complexity Low_complexity 1 33 0 2274 97 14 0 chr1 229698347 229698635 -12965718 + AluSc SINE Alu 1 292 -17 279 0 0 0 chr1 229698728 229698759 -12965594 + (A)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr1 229699093 229699114 -12965239 + AT_rich Low_complexity Low_complexity 1 21 0 3593 69 8 0 chr1 229699414 229699891 -12964462 - L1PA8 LINE L1 -7 6165 5685 693 165 6 70 chr1 229699895 229700053 -12964300 + MER106B DNA MER1_type 1 148 -911 208 204 20 41 chr1 229700075 229700173 -12964180 + (TTTAA)n Simple_repeat Simple_repeat 3 98 0 213 325 59 75 chr1 229700704 229700959 -12963394 + L2 LINE L2 2814 3064 -208 770 167 0 0 chr1 229701112 229701238 -12963115 - AluSg/x SINE Alu -13 299 174 423 0 0 0 chr1 229701530 229701577 -12962776 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6582 128 29 55 chr1 229701690 229702953 -12961400 + Tigger3b DNA MER2_type 1 1229 -2 2178 121 0 7 chr1 229702976 229703274 -12961079 - AluSx SINE Alu -16 296 1 279 272 40 8 chr1 229704159 229704284 -12960069 - Zaphod DNA AcHobo 0 4031 3903 3547 153 8 28 chr1 229704464 229704547 -12959806 + L1PB4 LINE L1 4573 4656 -1500 180 77 0 0 chr1 229704547 229704573 -12959780 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3547 153 8 28 chr1 229704573 229704947 -12959406 + L1PB4 LINE L1 4656 5036 -1120 1701 184 19 26 chr1 229704947 229705256 -12959097 + AluJb SINE Alu 1 307 -5 3547 153 8 28 chr1 229705256 229706044 -12958309 + L1PB4 LINE L1 5036 5787 -369 648 212 0 23 chr1 229706047 229706179 -12958174 - AluJo SINE Alu -79 233 105 250 79 0 0 chr1 229706221 229706259 -12958094 - L1P5 LINE L1 -333 5823 5786 355 38 38 0 chr1 229706278 229706331 -12958022 + (TA)n Simple_repeat Simple_repeat 1 55 0 1620 127 54 0 chr1 229706386 229706662 -12957691 + L1PB4 LINE L1 5782 6072 -84 409 294 25 17 chr1 229706663 229706782 -12957571 - MER5A DNA MER1_type -28 161 42 472 250 116 0 chr1 229706782 229706894 -12957459 - FLAM_A SINE Alu -8 125 1 190 214 29 86 chr1 229707504 229707574 -12956779 + MIR SINE MIR 42 107 -101 1714 178 3 34 chr1 229708308 229708628 -12955725 + AluJo SINE Alu 1 310 -2 180 77 0 0 chr1 229708878 229708904 -12955449 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 201 74 0 0 chr1 229708974 229709001 -12955352 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1899 163 0 3 chr1 229709004 229709287 -12955066 - AluJo SINE Alu -30 282 1 2769 128 21 7 chr1 229709474 229709896 -12954457 + MSTA LTR MaLR 1 428 0 399 56 0 0 chr1 229710159 229710213 -12954140 + (TG)n Simple_repeat Simple_repeat 1 54 0 5316 161 37 24 chr1 229710444 229711429 -12952924 + L1MC1 LINE L1 5083 6085 -248 2417 124 41 33 chr1 229711429 229711848 -12952505 + MSTB LTR MaLR 3 424 -2 5316 161 37 24 chr1 229711848 229712101 -12952252 + L1MC1 LINE L1 6085 6333 0 21 71 0 0 chr1 229712290 229712332 -12952021 + AT_rich Low_complexity Low_complexity 1 42 0 1958 177 34 29 chr1 229712412 229712962 -12951391 + MLT2A2 LTR ERVL 1 554 0 430 248 26 17 chr1 229713039 229713156 -12951197 + MIR SINE MIR 5 122 -140 757 89 36 0 chr1 229713167 229713279 -12951074 + MSTB1 LTR MaLR 313 428 -4 525 152 87 10 chr1 229713280 229713432 -12950921 + L1MC1 LINE L1 6069 6230 -114 188 276 112 41 chr1 229713432 229713530 -12950823 + MIR SINE MIR 156 260 -2 1124 192 156 49 chr1 229713920 229714248 -12950105 - MLT1A1 LTR MaLR 0 365 3 35933 85 11 8 chr1 229714651 229720776 -12943577 + L1PA6 LINE L1 11 6153 -1 437 255 48 19 chr1 229722189 229722397 -12941956 - L1ME4a LINE L1 -196 5925 5712 230 374 115 11 chr1 229722439 229722613 -12941740 + L2 LINE L2 2508 2699 -615 1098 237 34 95 chr1 229722637 229723228 -12941125 + L1MC4a LINE L1 5475 6029 -1779 24 85 0 0 chr1 229723551 229723610 -12940743 + AT_rich Low_complexity Low_complexity 1 59 0 357 303 160 5 chr1 229723642 229723830 -12940523 - L1ME3 LINE L1 -265 5897 5681 570 284 68 17 chr1 229723841 229724077 -12940276 - L2 LINE L2 -21 3292 3045 1257 294 75 10 chr1 229724460 229724950 -12939403 - L2 LINE L2 -259 3054 2533 346 225 81 51 chr1 229725053 229725289 -12939064 - L1ME LINE L1 -5301 769 527 2209 118 0 0 chr1 229725314 229725610 -12938743 - AluSg SINE Alu -14 296 1 2281 104 3 0 chr1 229725654 229725953 -12938400 - AluSx SINE Alu -12 300 1 1043 299 16 29 chr1 229727246 229727621 -12936732 + LTR16C LTR ERVL 121 490 -1 1519 169 67 10 chr1 229727732 229728122 -12936231 - MER4D LTR ERV1 -403 500 1 348 266 51 102 chr1 229728218 229728474 -12935879 - L1MC4 LINE L1 -1 8041 7799 1686 216 134 0 chr1 229728590 229729104 -12935249 - L1ME2 LINE L1 -190 5974 5392 1385 207 100 24 chr1 229729102 229729552 -12934801 - L1ME2 LINE L1 -1374 4772 4289 * 1812 273 55 22 chr1 229729570 229730447 -12933906 - L1ME2 LINE L1 -2196 3950 3045 749 194 8 0 chr1 229730736 229730870 -12933483 + FRAM SINE Alu 21 155 -21 317 292 24 21 chr1 229731666 229731779 -12932574 - MIR SINE MIR -68 140 73 4343 191 26 11 chr1 229731793 229733458 -12930895 + L1MB7 LINE L1 4484 6166 -18 243 0 0 0 chr1 229734852 229734879 -12929474 + (TG)n Simple_repeat Simple_repeat 1 27 0 1888 156 49 29 chr1 229735135 229735465 -12928888 - MSTA LTR MaLR -35 393 52 2721 32 0 0 chr1 229735465 229735774 -12928579 - AluY SINE Alu -2 309 1 1888 156 49 29 chr1 229735774 229735828 -12928525 - MSTA LTR MaLR -376 52 1 711 279 144 31 chr1 229736086 229736148 -12928205 - MLT1H LTR MaLR 0 549 495 2254 98 10 0 chr1 229736148 229736444 -12927909 - AluSp SINE Alu -6 307 9 711 279 144 31 chr1 229736444 229736839 -12927514 - MLT1H LTR MaLR -54 495 40 2236 109 0 16 chr1 229737049 229737353 -12927000 + AluSx SINE Alu 1 299 -13 442 169 11 0 chr1 229737838 229737927 -12926426 + MER53 DNA DNA 100 189 0 667 165 122 0 chr1 229738270 229738385 -12925968 - FLAM_C SINE Alu -4 129 1 2265 111 0 3 chr1 229738424 229738730 -12925623 - AluSc SINE Alu -4 305 1 671 313 71 0 chr1 229739804 229740015 -12924338 - MIR SINE MIR -5 257 32 2291 94 35 30 chr1 229740276 229740615 -12923738 - THE1B LTR MaLR -23 341 1 663 208 120 16 chr1 229741072 229741255 -12923098 + L1M4 LINE L1 2718 2919 -3227 1940 236 85 15 chr1 229741267 229741856 -12922497 + L1ME2 LINE L1 2304 2933 -3213 1816 164 27 0 chr1 229741861 229742154 -12922199 + AluJo SINE Alu 6 306 -6 3172 246 71 34 chr1 229742156 229743397 -12920956 + L1ME2 LINE L1 4007 5293 -853 1399 167 22 101 chr1 229743401 229743719 -12920634 + AluYb8 SINE Alu 1 293 -25 229 250 26 0 chr1 229743722 229743798 -12920555 + L1MC4 LINE L1 6614 6691 -1351 * 2607 238 59 36 chr1 229743794 229744623 -12919730 + L1ME2 LINE L1 5291 6138 -26 2160 84 6 61 chr1 229744711 229745022 -12919331 - AluSq SINE Alu -19 294 1 2489 175 19 7 chr1 229745638 229746056 -12918297 - MER61B LTR ERV1 0 425 3 363 314 51 57 chr1 229746275 229746450 -12917903 + MIR3 SINE MIR 7 180 -28 351 284 101 9 chr1 229746596 229746705 -12917648 + L2 LINE L2 3181 3299 -14 377 333 19 0 chr1 229746750 229746858 -12917495 + L2 LINE L2 3204 3313 0 272 179 0 18 chr1 229747551 229747607 -12916746 + L1MEc LINE L1 2312 2366 -4030 780 215 98 10 chr1 229747894 229748099 -12916254 - MIR SINE MIR -9 253 31 234 0 0 0 chr1 229748487 229748513 -12915840 + (TG)n Simple_repeat Simple_repeat 2 27 0 217 215 13 13 chr1 229748517 229748596 -12915757 + (TA)n Simple_repeat Simple_repeat 1 79 0 488 113 0 0 chr1 229748664 229748744 -12915609 + AluSc SINE Alu 227 306 -3 311 213 28 46 chr1 229748945 229749053 -12915300 + LTR37B LTR ERV1 268 373 -95 3287 124 50 110 chr1 229749692 229750367 -12913986 - MER41B LTR ERV1 0 635 1 2805 169 40 112 chr1 229751216 229751256 -12913097 + MER4E LTR ERV1 1 42 -724 2566 50 13 0 chr1 229751256 229751558 -12912795 - AluY SINE Alu -5 306 1 2805 169 40 112 chr1 229751558 229752077 -12912276 + MER4E LTR ERV1 42 486 -280 1883 147 17 3 chr1 229752077 229752369 -12911984 - AluSx SINE Alu -11 301 6 2805 169 40 112 chr1 229752369 229752624 -12911729 + MER4E LTR ERV1 486 758 -8 1977 141 17 3 chr1 229752845 229753142 -12911211 - AluSx SINE Alu -11 301 1 1546 126 0 35 chr1 229753201 229753432 -12910921 - AluSx SINE Alu -19 291 69 1150 155 149 5 chr1 229753448 229753702 -12910651 + MER61C LTR ERV1 18 404 -28 4349 158 68 21 chr1 229753715 229754527 -12909826 + MER61C-int LTR ERV1 1 850 -4367 * 28605 99 26 31 chr1 229754520 229754901 -12909452 + MER61C-int LTR ERV1 958 1339 -3878 2304 56 26 33 chr1 229754901 229755205 -12909148 - AluY SINE Alu -9 302 1 28605 99 26 31 chr1 229755205 229755216 -12909137 + MER61C-int LTR ERV1 1339 1349 -3868 2943 9 0 0 chr1 229755216 229755533 -12908820 - AluYb8 SINE Alu -1 317 1 28605 99 26 31 chr1 229755533 229759419 -12904934 + MER61C-int LTR ERV1 1349 5217 0 1156 210 36 10 chr1 229759419 229759721 -12904632 + MER61C LTR ERV1 1 404 -30 359 106 121 0 chr1 229759733 229759799 -12904554 - AluSx SINE Alu -229 74 1 2217 105 3 19 chr1 229759884 229760057 -12904296 + AluSq SINE Alu 1 168 -145 5291 97 60 50 chr1 229760057 229760875 -12903478 - LTR12 LTR ERV1 0 826 1 2217 105 3 19 chr1 229760875 229761016 -12903337 + AluSq SINE Alu 168 310 -3 279 342 101 40 chr1 229761331 229761530 -12902823 + L2 LINE L2 3016 3226 -46 2963 161 73 2 chr1 229761544 229762034 -12902319 + LTR45 LTR ERV1 1 525 0 298 188 38 0 chr1 229762063 229762143 -12902210 + GA-rich Low_complexity Low_complexity 2 84 0 3630 147 71 8 chr1 229762823 229763429 -12900924 + LTR48B LTR ERV1 1 644 0 2406 99 0 0 chr1 229763995 229764307 -12900046 - AluSx SINE Alu 0 312 1 475 309 85 25 chr1 229764371 229764572 -12899781 + MIR SINE MIR 24 236 -26 243 313 0 0 chr1 229765394 229765461 -12898892 - L2 LINE L2 0 3313 3247 1448 101 20 0 chr1 229766356 229766555 -12897798 + AluSp SINE Alu 1 203 -110 1409 236 47 126 chr1 229766556 229767193 -12897160 + MLT1E LTR MaLR 7 593 0 572 332 49 10 chr1 229767243 229767448 -12896905 + MIR SINE MIR 5 217 -45 250 290 43 0 chr1 229767478 229767547 -12896806 - MIR SINE MIR -74 188 117 636 222 43 0 chr1 229767549 229767711 -12896642 + L1M4 LINE L1 4924 5092 -1054 * 1126 171 64 23 chr1 229767704 229767971 -12896382 - L1M3 LINE L1 -422 5749 5497 802 212 122 21 chr1 229767972 229768161 -12896192 + AluJo SINE Alu 93 300 -12 529 204 11 0 chr1 229768162 229768255 -12896098 - MER7A DNA MER2_type -254 92 1 21 0 0 0 chr1 229768593 229768614 -12895739 + AT_rich Low_complexity Low_complexity 1 21 0 208 273 173 55 chr1 229769362 229769472 -12894881 - L2 LINE L2 -1 3312 3190 1938 170 67 6 chr1 229770974 229771315 -12893038 - MLT1A1 LTR MaLR -2 363 2 1404 120 10 27 chr1 229771608 229771899 -12892454 - THE1C LTR MaLR 0 375 1 1520 153 51 35 chr1 229771926 229772337 -12892016 - MLT2B2 LTR ERVL -19 496 1 507 239 138 0 chr1 229772580 229772739 -12891614 + MLT1J2 LTR MaLR 270 450 0 356 329 90 30 chr1 229773551 229773718 -12890635 + MIR SINE MIR 4 180 -82 324 352 56 0 chr1 229773978 229774106 -12890247 - MIR SINE MIR -59 149 12 627 291 20 15 chr1 229774328 229774524 -12889829 - MER21B LTR ERV1 -666 197 1 259 164 55 0 chr1 229774936 229774991 -12889362 + L1MC/D LINE L1 5772 5829 -1979 349 314 6 6 chr1 229775053 229775225 -12889128 + (CATATA)n Simple_repeat Simple_repeat 2 173 0 464 215 25 0 chr1 229775239 229775402 -12888951 + (TA)n Simple_repeat Simple_repeat 2 168 0 900 210 0 0 chr1 229775547 229775709 -12888644 - FRAM SINE Alu -8 168 7 258 298 0 24 chr1 229775833 229775917 -12888436 + GA-rich Low_complexity Low_complexity 5 86 0 1631 213 0 3 chr1 229776066 229776376 -12887977 - AluJb SINE Alu -3 309 1 1842 157 17 0 chr1 229777745 229778044 -12886309 + THE1C LTR MaLR 72 375 0 483 235 176 56 chr1 229778330 229778636 -12885717 - L2 LINE L2 -4 3309 2967 189 274 48 0 chr1 229779559 229779621 -12884732 - MIR3 SINE MIR -129 79 15 180 267 80 13 chr1 229780132 229780207 -12884146 - MER5A DNA MER1_type -89 100 21 204 313 53 8 chr1 229780278 229780409 -12883944 + L2 LINE L2 1566 1702 -1612 261 309 93 29 chr1 229780554 229780693 -12883660 + L2 LINE L2 1929 2076 -1238 2204 234 79 86 chr1 229780788 229782029 -12882324 - L1MC5 LINE L1 -54 7907 6676 199 402 98 8 chr1 229782397 229782519 -12881834 + MER5A DNA MER1_type 7 139 -50 * 224 290 130 20 chr1 229782424 229782524 -12881829 - MER5A DNA MER1_type -22 167 57 1099 156 0 6 chr1 229782780 229782940 -12881413 - FRAM SINE Alu -7 159 1 182 293 0 0 chr1 229782940 229782981 -12881372 + MER5A DNA MER1_type 149 189 0 318 348 105 11 chr1 229783464 229783645 -12880708 + MIR SINE MIR 50 247 -15 251 323 10 10 chr1 229783761 229783860 -12880493 + MIR SINE MIR 153 251 -11 * 500 282 0 0 chr1 229783847 229783964 -12880389 + L2 LINE L2 3187 3303 -10 2379 41 0 21 chr1 229785201 229785521 -12878832 - AluY SINE Alu 0 314 1 231 281 101 72 chr1 229785707 229785846 -12878507 - LTR40a LTR ERVL -374 145 3 2278 133 21 21 chr1 229785958 229786333 -12878020 + THE1C LTR MaLR 1 375 0 1880 232 54 42 chr1 229786591 229787481 -12876872 - L1M4 LINE L1 -817 5329 4628 4433 175 21 3 chr1 229787481 229788237 -12876116 - L1MB3 LINE L1 -1 6182 5413 1880 232 54 42 chr1 229788237 229788619 -12875734 - L1M4 LINE L1 -1518 4628 4252 1386 208 11 0 chr1 229788637 229788916 -12875437 - L1M4 LINE L1 -1890 4256 3975 * 1562 253 111 47 chr1 229788897 229789584 -12874769 - L1MDa LINE L1 -5262 1278 376 682 145 61 23 chr1 229789586 229789717 -12874636 - L1MDa LINE L1 -6357 183 48 2309 89 3 3 chr1 229790943 229791235 -12873118 + AluSc SINE Alu 1 292 -17 2264 101 0 0 chr1 229791736 229792022 -12872331 - AluSx SINE Alu -26 286 1 2032 124 0 0 chr1 229792762 229793044 -12871309 + AluSx SINE Alu 1 282 -30 306 0 0 0 chr1 229793045 229793079 -12871274 + (CA)n Simple_repeat Simple_repeat 1 34 0 225 330 130 34 chr1 229793985 229794327 -12870026 + L2 LINE L2 2715 3090 -182 845 289 86 28 chr1 229794353 229794747 -12869606 - LTR16A LTR ERVL -1 449 33 232 234 0 0 chr1 229794845 229794892 -12869461 + L2 LINE L2 3213 3259 -13 641 214 18 0 chr1 229794936 229795048 -12869305 - MER81 DNA DNA 0 114 1 2855 97 58 21 chr1 229795740 229796172 -12868181 + LTR7 LTR ERV1 1 448 -2 942 84 0 8 chr1 229796189 229796320 -12868033 - HERVH LTR ERV1 -7567 146 17 * 17493 97 13 37 chr1 229796300 229799180 -12865173 + HERVH LTR ERV1 437 2984 -4729 906 142 20 0 chr1 229799177 229799325 -12865028 + HERVH LTR ERV1 3140 3290 -4423 * 3304 119 4 4 chr1 229799324 229799818 -12864535 + HERVH LTR ERV1 3500 3993 -3720 4268 139 23 2 chr1 229799820 229800465 -12863888 + HERVH LTR ERV1 4488 5146 -2567 2630 99 42 35 chr1 229800469 229801064 -12863289 + HERVH LTR ERV1 5600 7713 0 2952 81 58 21 chr1 229801064 229801496 -12862857 + LTR7 LTR ERV1 1 448 -2 405 0 0 0 chr1 229803006 229803051 -12861302 + (TG)n Simple_repeat Simple_repeat 2 46 0 216 269 97 30 chr1 229803236 229803370 -12860983 + L2 LINE L2 1869 2011 -1303 786 192 8 0 chr1 229803388 229803518 -12860835 + FLAM_A SINE Alu 1 131 -2 236 253 281 6 chr1 229804166 229804344 -12860009 - MIR SINE MIR -31 231 5 3990 144 33 11 chr1 229804463 229805102 -12859251 + MER39B LTR ERV1 1 653 0 857 219 0 11 chr1 229806006 229806184 -12858169 - FRAM SINE Alu -8 168 1 769 200 0 0 chr1 229806201 229806326 -12858027 - AluJb SINE Alu -16 296 172 232 298 0 0 chr1 229806329 229806386 -12857967 - AluYa8 SINE Alu -150 150 94 4394 150 65 10 chr1 229807386 229808226 -12856127 + MER4D LTR ERV1 1 664 0 1090 232 45 51 chr1 229809114 229809489 -12854864 + MER93b LTR ERV1 1 373 0 940 198 41 29 chr1 229811707 229811950 -12852403 + LTR48B LTR ERV1 394 639 -5 253 227 23 0 chr1 229812281 229812369 -12851984 - L1MC4 LINE L1 -1339 6703 6614 2516 95 47 33 chr1 229814183 229814542 -12849811 + THE1B LTR MaLR 1 364 0 689 215 0 0 chr1 229815120 229815241 -12849112 - AluSx SINE Alu 0 309 189 995 129 7 0 chr1 229815241 229815380 -12848973 - AluSx SINE Alu -172 140 1 364 326 68 62 chr1 229815642 229815734 -12848619 + L1ME LINE L1 5324 5414 -707 183 80 0 0 chr1 229815734 229815759 -12848594 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 364 326 68 62 chr1 229815759 229816041 -12848312 + L1ME LINE L1 5414 5704 -417 2331 88 7 3 chr1 229816041 229816335 -12848018 + AluSq SINE Alu 1 295 -18 364 326 68 62 chr1 229816335 229816456 -12847897 + L1ME LINE L1 5704 5823 -298 225 340 131 39 chr1 229816535 229816741 -12847612 - L2 LINE L2 -41 3231 3007 2834 7 0 0 chr1 229817193 229817497 -12846856 - AluY SINE Alu -7 304 1 923 86 0 0 chr1 229817758 229817875 -12846478 + AluSg/x SINE Alu 154 270 -39 243 0 0 0 chr1 229817885 229817912 -12846441 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4424 155 18 11 chr1 229818972 229819682 -12844671 + LTR62 LTR ERVK 1 715 -4 315 340 68 39 chr1 229820449 229820655 -12843698 + L3 LINE CR1 1031 1242 -335 2237 83 0 0 chr1 229820816 229821094 -12843259 + AluSg SINE Alu 1 278 -32 21 0 0 0 chr1 229821337 229821358 -12842995 + AT_rich Low_complexity Low_complexity 1 21 0 566 93 12 0 chr1 229822636 229822722 -12841631 + (GAA)n Simple_repeat Simple_repeat 2 88 0 255 358 0 0 chr1 229823932 229824013 -12840340 - MIR SINE MIR -110 152 72 228 139 0 0 chr1 229824909 229824945 -12839408 - L1MC/D LINE L1 -1928 5880 5845 1833 163 12 18 chr1 229825143 229825469 -12838884 + Tigger3b DNA MER2_type 2 325 -906 245 214 18 0 chr1 229825458 229825514 -12838839 - Tigger3b DNA MER2_type -849 382 326 * 2892 149 32 6 chr1 229825646 229826115 -12838238 + HERVH LTR ERV1 4666 5146 -2567 2669 96 42 35 chr1 229826119 229826714 -12837639 + HERVH LTR ERV1 5600 7713 0 2952 81 58 21 chr1 229826714 229827146 -12837207 + LTR7 LTR ERV1 1 448 -2 261 0 0 0 chr1 229828655 229828684 -12835669 + (TG)n Simple_repeat Simple_repeat 2 30 0 216 269 97 30 chr1 229828869 229829003 -12835350 + L2 LINE L2 1869 2011 -1303 786 192 8 0 chr1 229829021 229829151 -12835202 + FLAM_A SINE Alu 1 131 -2 217 264 281 6 chr1 229829799 229829977 -12834376 - MIR SINE MIR -31 231 5 4008 138 34 12 chr1 229830096 229830735 -12833618 + MER39B LTR ERV1 1 653 0 857 219 0 11 chr1 229831638 229831816 -12832537 - FRAM SINE Alu -8 168 1 769 200 0 0 chr1 229831833 229831958 -12832395 - AluJb SINE Alu -16 296 172 232 298 0 0 chr1 229831961 229832018 -12832335 - AluYa8 SINE Alu -150 150 94 4382 151 65 10 chr1 229833018 229833858 -12830495 + MER4D LTR ERV1 1 664 0 1090 232 45 51 chr1 229834746 229835121 -12829232 + MER93b LTR ERV1 1 373 0 940 198 41 29 chr1 229837339 229837582 -12826771 + LTR48B LTR ERV1 394 639 -5 253 227 23 0 chr1 229837913 229838001 -12826352 - L1MC4 LINE L1 -1339 6703 6614 2516 95 47 33 chr1 229839815 229840174 -12824179 + THE1B LTR MaLR 1 364 0 689 215 0 0 chr1 229840752 229840873 -12823480 - AluSx SINE Alu 0 312 192 995 129 7 0 chr1 229840873 229841012 -12823341 - AluSx SINE Alu -172 140 1 183 80 0 0 chr1 229841366 229841391 -12822962 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 340 306 91 30 chr1 229841490 229841673 -12822680 + L1ME LINE L1 5502 5707 -414 2296 92 7 3 chr1 229841673 229841967 -12822386 + AluSq SINE Alu 1 295 -18 340 306 91 30 chr1 229841967 229842048 -12822305 + L1ME LINE L1 5707 5782 -339 204 345 131 39 chr1 229842167 229842373 -12821980 - L2 LINE L2 -41 3231 3007 2776 13 0 0 chr1 229842825 229843129 -12821224 - AluY SINE Alu -7 304 1 923 86 0 0 chr1 229843390 229843507 -12820846 + AluSg/x SINE Alu 154 270 -39 243 0 0 0 chr1 229843517 229843544 -12820809 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3772 160 61 0 chr1 229844604 229845278 -12819075 + LTR62 LTR ERVK 1 715 -4 321 340 68 39 chr1 229846045 229846251 -12818102 + L3 LINE CR1 1031 1242 -335 2220 86 0 0 chr1 229846412 229846692 -12817661 + AluSg SINE Alu 1 280 -30 21 0 0 0 chr1 229846934 229846955 -12817398 + AT_rich Low_complexity Low_complexity 1 21 0 2188 57 43 4 chr1 229847387 229847667 -12816686 + AluY SINE Alu 3 293 -18 4451 179 69 9 chr1 229848302 229849291 -12815062 - L1MD1 LINE L1 0 6636 5592 1748 242 29 4 chr1 229849308 229849820 -12814533 - L1MD1 LINE L1 -3450 3090 2566 1621 325 88 27 chr1 229849809 229850700 -12813653 - L1MD1 LINE L1 -5409 1131 110 * 4428 173 55 2 chr1 229850719 229850830 -12813523 - L1MB7 LINE L1 -19 6165 6061 198 103 0 0 chr1 229850830 229850859 -12813494 + (TTCTG)n Simple_repeat Simple_repeat 2 30 0 4428 173 55 2 chr1 229850859 229851688 -12812665 - L1MB7 LINE L1 -123 6061 5173 477 272 0 0 chr1 229851688 229851802 -12812551 - L1MD1 LINE L1 -6410 130 17 528 309 96 4 chr1 229853057 229853287 -12811066 + MER115 DNA AcHobo 435 685 -8 720 225 39 127 chr1 229854036 229854320 -12810033 - MIR SINE MIR -3 259 1 1826 176 0 3 chr1 229854997 229855287 -12809066 + AluJo SINE Alu 1 289 -23 225 340 71 78 chr1 229855650 229855791 -12808562 + L2 LINE L2 2565 2704 -610 536 323 44 28 chr1 229855860 229856111 -12808242 - L2 LINE L2 -32 3281 3027 423 245 206 49 chr1 229856111 229856315 -12808038 + MLT1E LTR MaLR 3 238 -355 915 218 41 44 chr1 229856316 229857662 -12806691 - L1ME LINE L1 -469 5766 4291 * 1696 246 63 50 chr1 229857648 229858699 -12805654 - L1M2 LINE L1 -3693 2522 1510 4124 70 2 5 chr1 229859932 229860488 -12803865 - L1PA7 LINE L1 0 6154 5601 23 0 0 0 chr1 229860720 229860743 -12803610 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 229860805 229860834 -12803519 + AT_rich Low_complexity Low_complexity 1 29 0 712 304 80 22 chr1 229860864 229861401 -12802952 - L1ME4a LINE L1 -238 5883 5316 2422 130 5 3 chr1 229861516 229861893 -12802460 - L1PB1 LINE L1 -5 6146 5769 431 119 80 0 chr1 229861918 229862236 -12802117 + (TA)n Simple_repeat Simple_repeat 1 343 0 31 0 0 0 chr1 229863388 229863419 -12800934 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 229863585 229863606 -12800747 + AT_rich Low_complexity Low_complexity 1 21 0 1491 107 0 0 chr1 229863606 229863812 -12800541 + L1PB1 LINE L1 5794 5999 -152 228 136 79 7 chr1 229863814 229863954 -12800399 + (TA)n Simple_repeat Simple_repeat 2 151 0 195 42 0 0 chr1 229863978 229864002 -12800351 + (TC)n Simple_repeat Simple_repeat 1 24 0 2385 99 0 0 chr1 229864420 229864724 -12799629 + AluSp SINE Alu 1 304 -9 24 0 0 0 chr1 229865243 229865267 -12799086 + AT_rich Low_complexity Low_complexity 1 24 0 8141 243 58 25 chr1 229865554 229868147 -12796206 + L1MB1 LINE L1 1 2470 -3500 2064 149 125 8 chr1 229868147 229868530 -12795823 + MSTA LTR MaLR 1 428 0 8141 243 58 25 chr1 229868530 229870267 -12794086 + L1MB1 LINE L1 2470 4147 -1823 31568 104 17 58 chr1 229870293 229876703 -12787650 - L1PA7 LINE L1 -2 6152 12 3845 181 68 37 chr1 229876723 229877727 -12786626 + L1MB1 LINE L1 4139 5207 -785 1459 203 14 0 chr1 229877727 229878017 -12786336 + AluJo SINE Alu 1 294 -18 3845 181 68 37 chr1 229878017 229878410 -12785943 + L1MB1 LINE L1 5207 5586 -406 923 141 150 3 chr1 229878412 229878602 -12785751 - MSTA LTR MaLR -214 212 1 1636 172 55 31 chr1 229878602 229878986 -12785367 + L1MB1 LINE L1 5600 5992 0 908 214 41 0 chr1 229879273 229879469 -12784884 + L1MA6 LINE L1 6077 6280 -20 1111 131 11 28 chr1 229879503 229879679 -12784674 - MSTB1 LTR MaLR -3 429 257 292 329 30 6 chr1 229879991 229880155 -12784198 + L2 LINE L2 1323 1490 -1824 750 184 0 0 chr1 229880464 229880600 -12783753 + FLAM_C SINE Alu 1 136 -7 211 271 194 58 chr1 229880908 229881336 -12783017 + L2 LINE L2 2020 2505 -809 797 177 78 16 chr1 229882568 229882760 -12781593 + MER89 LTR ERV1 1 204 -355 4924 136 28 54 chr1 229882819 229883578 -12780775 - L1MA4A LINE L1 -12 6291 5559 614 154 112 56 chr1 229883578 229883721 -12780632 + FRAM SINE Alu 1 151 -15 4924 136 28 54 chr1 229883721 229883911 -12780442 - L1MA4A LINE L1 -744 5559 5366 1661 172 12 30 chr1 229883916 229884247 -12780106 + MER89 LTR ERV1 235 559 0 2098 143 88 15 chr1 229884917 229885315 -12779038 + MSTA LTR MaLR 1 427 -1 201 156 0 0 chr1 229886701 229886733 -12777620 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2013 128 3 7 chr1 229887903 229888192 -12776161 + AluSq SINE Alu 8 295 -18 21 0 0 0 chr1 229890738 229890759 -12773594 + AT_rich Low_complexity Low_complexity 1 21 0 326 26 0 0 chr1 229890808 229890846 -12773507 + tRNA-Phe-TTC tRNA tRNA 1 38 -38 725 192 34 7 chr1 229891903 229892049 -12772304 - L1MC2 LINE L1 -18 6326 6177 391 242 8 8 chr1 229892049 229892181 -12772172 + (TA)n Simple_repeat Simple_repeat 2 133 0 238 162 0 0 chr1 229892183 229892220 -12772133 - Alu SINE Alu -62 241 205 4624 144 27 15 chr1 229892221 229893010 -12771343 - L1MC2 LINE L1 -162 6182 5385 * 8063 223 25 24 chr1 229893007 229894404 -12769949 - L1MC/D LINE L1 -744 5402 4059 2048 116 4 0 chr1 229894404 229894707 -12769646 - AluSg SINE Alu 0 306 3 8063 223 25 24 chr1 229894707 229895614 -12768739 - L1MC/D LINE L1 -2087 4059 3155 218 260 10 73 chr1 229898277 229898373 -12765980 + MIR SINE MIR 108 197 -65 3047 133 97 43 chr1 229898554 229899186 -12765167 + Tigger3(Golem) DNA MER2_type 2364 3029 0 575 156 37 0 chr1 229900021 229900156 -12764197 + CT-rich Low_complexity Low_complexity 3 142 0 1710 166 14 7 chr1 229900837 229901151 -12763202 + AluJb SINE Alu 1 316 0 1959 174 20 9 chr1 229901171 229901516 -12762837 + MER65C LTR ERV1 1 349 -112 511 244 24 16 chr1 229901483 229901606 -12762747 + LTR51 LTR ERV1 548 671 0 * 2088 149 53 25 chr1 229901883 229902238 -12762115 - MLT1A1 LTR MaLR 0 365 1 2323 205 120 29 chr1 229902238 229902820 -12761533 - MLT1A1-int LTR MaLR 0 1735 1050 374 259 7 16 chr1 229902819 229902985 -12761368 - MLT1A1-int LTR MaLR -950 785 590 * 694 257 0 0 chr1 229902985 229903121 -12761232 - FLAM_A SINE Alu -4 138 3 3276 178 24 9 chr1 229903124 229903390 -12760963 - MLT1A1-int LTR MaLR -1141 594 334 1255 82 53 0 chr1 229903390 229903560 -12760793 - L1PA8 LINE L1 -5 6167 5989 3276 178 24 9 chr1 229903560 229903877 -12760476 - MLT1A1-int LTR MaLR -1401 334 2 2785 183 80 0 chr1 229903878 229904353 -12760000 - MLT2B2 LTR ERVL 0 515 3 2640 195 52 10 chr1 229904365 229904883 -12759470 - MER74A LTR ERVL -1 557 18 456 299 82 7 chr1 229905219 229905366 -12758987 - MIR SINE MIR -54 208 51 705 280 82 5 chr1 229906977 229907184 -12757169 + MIR SINE MIR 18 240 -22 1915 204 36 17 chr1 229907914 229908272 -12756081 + MLT1A1 LTR MaLR 1 365 0 446 229 28 18 chr1 229908779 229908888 -12755465 + MLT1I LTR MaLR 231 340 -69 2307 109 0 7 chr1 229908888 229909191 -12755162 + AluSx SINE Alu 1 301 -11 273 209 60 0 chr1 229909198 229909265 -12755088 + MLT1I LTR MaLR 314 384 -25 556 344 30 22 chr1 229910830 229911191 -12753162 + L2 LINE L2 1843 2206 -1108 243 0 0 0 chr1 229911196 229911223 -12753130 + (TAA)n Simple_repeat Simple_repeat 2 28 0 389 299 134 32 chr1 229911372 229911529 -12752824 + MER5B DNA MER1_type 3 175 -3 1228 282 60 85 chr1 229911532 229912043 -12752310 + L2 LINE L2 2215 2737 -576 1488 242 129 28 chr1 229912043 229912501 -12751852 - MLT1D LTR MaLR -1 504 1 1228 282 60 85 chr1 229912501 229912546 -12751807 + L2 LINE L2 2737 2782 -531 2320 105 0 0 chr1 229912546 229912842 -12751511 - AluY SINE Alu -15 296 1 1228 282 60 85 chr1 229912842 229913407 -12750946 + L2 LINE L2 2782 3313 0 1107 218 133 56 chr1 229913414 229913753 -12750600 + MLT1A1 LTR MaLR 1 365 0 2024 119 3 42 chr1 229914674 229914984 -12749369 + AluSx SINE Alu 1 298 -14 2362 179 71 26 chr1 229915575 229916110 -12748243 + MER34B LTR ERV1 2 560 -5 1837 164 3 0 chr1 229916762 229917054 -12747299 + AluSx SINE Alu 12 304 -8 43 47 0 0 chr1 229919387 229919451 -12744902 + AT_rich Low_complexity Low_complexity 1 64 0 193 303 182 15 chr1 229920421 229920538 -12743815 + L2 LINE L2 1533 1629 -1685 2459 79 0 0 chr1 229920538 229920841 -12743512 - AluY SINE Alu -8 303 1 193 303 182 15 chr1 229920841 229920987 -12743366 + L2 LINE L2 1629 1840 -1474 1736 249 79 37 chr1 229921087 229922094 -12742259 + L2 LINE L2 2273 3313 0 23 33 0 0 chr1 229922215 229922245 -12742108 + AT_rich Low_complexity Low_complexity 1 30 0 210 294 98 0 chr1 229922353 229922445 -12741908 + L2 LINE L2 3212 3312 -1 283 256 42 55 chr1 229923187 229923322 -12741031 + MIR SINE MIR 33 163 -61 2329 101 7 0 chr1 229923422 229923730 -12740623 - AluSg SINE Alu 0 310 1 2059 106 7 7 chr1 229928972 229929278 -12735075 - AluSx SINE Alu 0 306 1 940 205 11 5 chr1 229929303 229929493 -12734860 - L1PA16 LINE L1 -16 6150 5960 32 43 0 0 chr1 229930843 229930889 -12733464 + AT_rich Low_complexity Low_complexity 1 46 0 200 351 70 18 chr1 229931107 229931221 -12733132 + L2 LINE L2 2951 3070 -202 1364 276 103 52 chr1 229931347 229932170 -12732183 + L2 LINE L2 2307 3178 -135 4022 119 52 16 chr1 229932170 229932800 -12731553 + MER39B LTR ERV1 1 653 0 1364 276 103 52 chr1 229932800 229932944 -12731409 + L2 LINE L2 3178 3313 0 263 260 0 31 chr1 229933226 229933322 -12731031 + (AGGTG)n Simple_repeat Simple_repeat 3 95 0 2077 106 13 20 chr1 229933865 229934166 -12730187 + AluSx SINE Alu 1 299 -13 2222 136 23 6 chr1 229934176 229934530 -12729823 - L1MA5A LINE L1 -2 6295 5936 465 129 0 0 chr1 229934624 229934694 -12729659 - L1MA5A LINE L1 -345 5952 5883 282 264 28 0 chr1 229935513 229935585 -12728768 - MER116 DNA Mariner -1 79 6 1142 153 26 6 chr1 229936363 229936653 -12727700 - MLT1B LTR MaLR 0 390 1 460 268 123 36 chr1 229936676 229936896 -12727457 + MIR SINE MIR 21 259 -3 1565 209 39 15 chr1 229937464 229937795 -12726558 - MER58B DNA MER1_type 0 341 3 23 0 0 0 chr1 229937815 229937838 -12726515 + GC_rich Low_complexity Low_complexity 1 23 0 2111 109 0 0 chr1 229937851 229938126 -12726227 - AluSg SINE Alu -35 275 1 1591 178 7 19 chr1 229938434 229938743 -12725610 + AluJo SINE Alu 1 305 -7 2309 100 0 10 chr1 229938840 229939150 -12725203 - AluSc SINE Alu 0 309 3 1123 223 93 65 chr1 229939531 229939802 -12724551 + MER39 LTR ERV1 1 263 -302 1386 174 34 101 chr1 229939802 229940130 -12724223 - AluJo SINE Alu -6 306 1 1123 223 93 65 chr1 229940130 229940348 -12724005 + MER39 LTR ERV1 263 565 0 25 0 0 0 chr1 229943147 229943172 -12721181 + GC_rich Low_complexity Low_complexity 1 25 0 315 272 147 55 chr1 229943361 229943685 -12720668 + L1M2 LINE L1 736 1220 -5629 215 79 26 0 chr1 229943685 229943723 -12720630 + (CCCG)n Simple_repeat Simple_repeat 2 40 0 315 272 147 55 chr1 229943723 229943751 -12720602 + L1M2 LINE L1 1220 1244 -5605 195 42 0 0 chr1 229944059 229944083 -12720270 + (TG)n Simple_repeat Simple_repeat 2 25 0 422 201 132 58 chr1 229944534 229944708 -12719645 + L1ME4a LINE L1 5532 5718 -403 252 0 0 0 chr1 229944748 229944776 -12719577 + (CA)n Simple_repeat Simple_repeat 2 29 0 279 237 52 21 chr1 229944787 229944884 -12719469 + L1ME4a LINE L1 5718 5817 -304 355 209 82 45 chr1 229945024 229945134 -12719219 + L1ME4a LINE L1 6006 6119 -2 210 340 0 0 chr1 229945281 229945334 -12719019 + L2 LINE L2 1365 1417 -1897 4802 67 0 41 chr1 229945958 229946570 -12717783 + LTR14C LTR ERVK 1 587 0 2023 254 77 15 chr1 229946574 229947097 -12717256 + MLT1H1 LTR MaLR 1 555 0 187 286 149 74 chr1 229947937 229948112 -12716241 + L3 LINE CR1 719 906 -671 3499 151 9 5 chr1 229948121 229948677 -12715676 + L1MB3 LINE L1 5626 6183 0 899 306 128 5 chr1 229948891 229949273 -12715080 + L3 LINE CR1 1147 1575 -2 1694 111 56 15 chr1 229950824 229951120 -12713233 - AluSg SINE Alu 0 307 1 317 246 82 45 chr1 229951320 229951430 -12712923 + L1ME4a LINE L1 6006 6119 -2 26 30 0 0 chr1 229951526 229951559 -12712794 + AT_rich Low_complexity Low_complexity 1 33 0 16563 129 20 73 chr1 229951781 229952713 -12711640 + Tigger2 DNA MER2_type 4 984 -1734 1874 153 7 16 chr1 229952713 229953020 -12711333 + AluJb SINE Alu 1 304 -8 16563 129 20 73 chr1 229953020 229954953 -12709400 + Tigger2 DNA MER2_type 984 2718 0 599 320 26 13 chr1 229955127 229955358 -12708995 + MIR SINE MIR 19 252 -10 250 319 0 33 chr1 229955388 229955479 -12708874 + L2 LINE L2 3185 3272 0 2245 93 16 26 chr1 229955558 229955871 -12708482 + AluSx SINE Alu 2 311 -1 189 323 20 0 chr1 229956330 229956429 -12707924 - L2 LINE L2 -1897 1417 1317 2348 95 0 19 chr1 229956527 229956843 -12707510 - AluSg SINE Alu 0 310 1 185 338 136 46 chr1 229956900 229957856 -12706497 - L2 LINE L2 -2203 1111 70 2163 105 7 3 chr1 229959310 229959604 -12704749 - AluSq SINE Alu -18 295 1 722 197 8 0 chr1 229961410 229961537 -12702816 + FLAM_C SINE Alu 2 129 -4 391 175 12 12 chr1 229961648 229961728 -12702625 + L1M4 LINE L1 4856 4935 -1211 569 120 0 0 chr1 229961728 229961803 -12702550 - AluS SINE Alu -14 295 221 624 115 0 0 chr1 229962140 229962227 -12702126 - L1MA2 LINE L1 -6 6298 6212 409 286 27 0 chr1 229962498 229962610 -12701743 + L2 LINE L2 3158 3272 0 207 306 35 0 chr1 229962596 229962681 -12701672 - L2 LINE L2 -821 2493 2406 * 4532 144 40 22 chr1 229962716 229963482 -12700871 + L1MC1 LINE L1 5543 6322 -11 2028 148 3 3 chr1 229963484 229963795 -12700558 + AluSx SINE Alu 2 312 0 1724 191 0 7 chr1 229963954 229964253 -12700100 + AluJb SINE Alu 13 309 -3 2162 144 76 3 chr1 229964264 229964646 -12699707 + MSTB1 LTR MaLR 5 414 -18 226 283 0 0 chr1 229964768 229964821 -12699532 + L1M2 LINE L1 5512 5564 -748 2708 136 43 21 chr1 229964822 229965241 -12699112 + MSTA LTR MaLR 1 428 0 366 240 62 10 chr1 229965614 229965710 -12698643 + L2 LINE L2 3213 3313 0 387 0 0 0 chr1 229965873 229965916 -12698437 + (TG)n Simple_repeat Simple_repeat 2 44 0 1670 151 0 0 chr1 229966261 229966500 -12697853 - MER8 DNA MER2_type 0 239 1 22 0 0 0 chr1 229966544 229966566 -12697787 + AT_rich Low_complexity Low_complexity 1 22 0 491 314 90 53 chr1 229966626 229967210 -12697143 - L1ME3 LINE L1 -296 5866 5255 267 255 0 0 chr1 229967318 229967365 -12696988 - Tigger7 DNA MER2_type -1 2486 2440 923 191 120 63 chr1 229967365 229967916 -12696437 - MER4C LTR ERV1 0 695 78 186 43 0 0 chr1 229967916 229967939 -12696414 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 923 191 120 63 chr1 229967939 229968022 -12696331 - MER4C LTR ERV1 -617 78 1 300 191 0 44 chr1 229968023 229968091 -12696262 - Tigger7 DNA MER2_type -45 2442 2378 1213 213 8 8 chr1 229968124 229968359 -12695994 - Tigger7 DNA MER2_type -315 235 1 2426 219 85 75 chr1 229968363 229969166 -12695187 - MER21B LTR ERV1 -52 811 1 2209 126 0 3 chr1 229970606 229970915 -12693438 - AluSx SINE Alu -4 308 1 669 166 29 63 chr1 229971571 229971707 -12692646 - MER53 DNA DNA 0 189 59 1895 106 8 0 chr1 229971707 229971961 -12692392 - AluSg1 SINE Alu -12 297 42 669 166 29 63 chr1 229971961 229971999 -12692354 - MER53 DNA DNA -130 59 21 910 120 0 0 chr1 229971999 229972124 -12692229 - AluSg1 SINE Alu -143 166 42 280 200 0 0 chr1 229972124 229972179 -12692174 - MER53 DNA DNA -131 58 4 296 316 18 18 chr1 229972329 229972443 -12691910 + MIR3 SINE MIR 43 156 -52 619 301 6 17 chr1 229973149 229973322 -12691031 - MER5B DNA MER1_type -6 172 2 411 329 100 9 chr1 229973346 229973677 -12690676 + L2 LINE L2 1471 1831 -1483 22 35 0 0 chr1 229973827 229973856 -12690497 + AT_rich Low_complexity Low_complexity 1 29 0 276 333 121 25 chr1 229974188 229974428 -12689925 + L2 LINE L2 1917 2179 -1135 5639 112 2 1 chr1 229974428 229975215 -12689138 + L1PA16 LINE L1 5370 6157 -9 1918 282 85 36 chr1 229975234 229976099 -12688254 + L2 LINE L2 2169 3080 -233 282 300 25 12 chr1 229976122 229976202 -12688151 + L2 LINE L2 3233 3313 0 1639 148 47 28 chr1 229977071 229977388 -12686965 + MER4B-int LTR ERV1 5350 5672 -1086 2170 116 3 7 chr1 229977516 229977826 -12686527 - AluSx SINE Alu -3 309 1 470 314 81 7 chr1 229978353 229978624 -12685729 - HAL1 LINE L1 -741 1766 1476 594 272 105 56 chr1 229978838 229979180 -12685173 + MLT1L LTR MaLR 203 588 -27 754 322 82 52 chr1 229979355 229979883 -12684470 - L2 LINE L2 0 3313 2770 506 272 45 68 chr1 229979887 229980196 -12684157 - L2 LINE L2 -1264 2050 1749 1440 104 5 0 chr1 229980225 229980418 -12683935 + AluSp SINE Alu 1 194 -119 201 167 0 0 chr1 229980932 229980968 -12683385 + GA-rich Low_complexity Low_complexity 1 36 0 1250 282 94 43 chr1 229982125 229982841 -12681512 - L2 LINE L2 -3 3310 2465 2162 109 0 20 chr1 229982841 229983144 -12681209 + AluSx SINE Alu 1 297 -15 1250 282 94 43 chr1 229983144 229983325 -12681028 - L2 LINE L2 -848 2465 2295 586 245 123 0 chr1 229983903 229984058 -12680295 + AluJb SINE Alu 137 310 -2 285 173 62 0 chr1 229984071 229984152 -12680201 + GA-rich Low_complexity Low_complexity 4 89 0 1548 194 115 31 chr1 229984952 229985334 -12679019 + MLT2D LTR ERVL 1 414 0 1629 285 57 10 chr1 229985335 229985840 -12678513 + ERVL-D LTR ERVL 2 530 -5234 2278 206 95 0 chr1 229985846 229986277 -12678076 + HERVL LTR ERVL 4071 4542 -1112 5243 141 19 10 chr1 229986605 229987380 -12676973 - LTR39 LTR ERV1 0 783 2 678 289 9 18 chr1 229988251 229988469 -12675884 + MIR SINE MIR 3 218 -44 503 235 96 93 chr1 229989983 229990264 -12674089 - L1MC4 LINE L1 0 8042 7763 435 38 0 0 chr1 229990264 229990317 -12674036 + (GA)n Simple_repeat Simple_repeat 2 54 0 1643 112 121 0 chr1 229990317 229990566 -12673787 - AluSq SINE Alu -34 279 1 503 235 96 93 chr1 229990566 229990636 -12673717 - L1MC4 LINE L1 -278 7764 7689 2328 226 31 24 chr1 229991463 229992002 -12672351 + L1MD2 LINE L1 5544 6086 -273 1061 193 52 5 chr1 229992005 229992218 -12672135 + L1MD2 LINE L1 6122 6344 -15 541 259 57 31 chr1 229992225 229992418 -12671935 + MIR SINE MIR 65 262 0 383 343 93 0 chr1 229992887 229993027 -12671326 + L2 LINE L2 3112 3264 -8 861 253 91 14 chr1 229993915 229994200 -12670153 - L1MCc LINE L1 -6100 323 17 609 231 0 11 chr1 229994631 229994813 -12669540 + CT-rich Low_complexity Low_complexity 1 180 0 1844 168 3 10 chr1 229994816 229995113 -12669240 - AluJb SINE Alu -17 295 1 5909 112 13 9 chr1 229996864 229997703 -12666650 + THE1C-int LTR MaLR 739 1580 0 2764 111 16 8 chr1 229997704 229998075 -12666278 + THE1C LTR MaLR 2 375 0 369 272 154 35 chr1 229998078 229998247 -12666106 - L2 LINE L2 -539 2775 2587 314 316 44 131 chr1 229998268 229998437 -12665916 + L2 LINE L2 2858 3040 -232 2124 145 139 13 chr1 229998437 229998817 -12665536 - MSTA LTR MaLR 0 428 1 314 316 44 131 chr1 229998817 229999097 -12665256 + L2 LINE L2 3040 3268 -4 901 145 62 62 chr1 229999258 229999451 -12664902 + MER2 DNA MER2_type 15 207 -138 425 91 0 52 chr1 229999472 229999549 -12664804 - L1PA16 LINE L1 0 6166 6094 300 280 27 0 chr1 229999589 229999664 -12664689 + MER2 DNA MER2_type 269 345 0 461 314 28 17 chr1 230000797 230001120 -12663233 + L1MCc LINE L1 1167 1528 -4955 9797 168 19 13 chr1 230001612 230003521 -12660832 - L1MA9 LINE L1 -1048 5098 3178 1827 137 4 0 chr1 230003513 230003906 -12660447 + L1MA9 LINE L1 5087 5480 -743 * 2913 178 23 43 chr1 230004006 230004608 -12659745 + L1MA9 LINE L1 5722 6311 -1 2633 172 31 54 chr1 230004653 230006276 -12658077 - L1MC1 LINE L1 0 6333 4699 1339 113 0 0 chr1 230006376 230006553 -12657800 - AluSq SINE Alu -136 177 1 2222 104 0 25 chr1 230008388 230008741 -12655612 + AluSx SINE Alu 1 345 0 295 349 57 0 chr1 230008797 230008903 -12655450 + MIR SINE MIR 42 153 -55 262 257 27 27 chr1 230009474 230009548 -12654805 + L2 LINE L2 3199 3272 0 752 212 147 27 chr1 230011391 230011575 -12652778 + MER20 DNA MER1_type 2 207 -12 180 0 0 0 chr1 230012432 230012452 -12651901 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 5361 152 11 1 chr1 230012452 230013465 -12650888 - L1PB4 LINE L1 -16 6140 5116 248 108 0 0 chr1 230015114 230015151 -12649202 + (TC)n Simple_repeat Simple_repeat 2 38 0 268 188 0 21 chr1 230015179 230015227 -12649126 - MLT1J2 LTR MaLR -284 166 120 922 125 0 0 chr1 230015408 230015544 -12648809 - L1M1 LINE L1 -559 5741 5606 2614 58 0 3 chr1 230015544 230015855 -12648498 - AluY SINE Alu -1 310 1 2287 229 60 8 chr1 230017597 230018130 -12646223 + MLT1E LTR MaLR 33 593 0 397 258 20 60 chr1 230018592 230018743 -12645610 - L1ME LINE L1 -440 5681 5537 310 321 37 0 chr1 230019266 230019375 -12644978 + L2 LINE L2 3200 3312 -1 1005 161 12 0 chr1 230019583 230019744 -12644609 - L1MA10 LINE L1 -2 6332 6170 2214 83 6 19 chr1 230019751 230020063 -12644290 - AluSg SINE Alu -1 309 2 2181 103 8 64 chr1 230020178 230020210 -12644143 - L1MB1 LINE L1 -28 6161 6129 1636 180 37 4 chr1 230020210 230020514 -12643839 - AluJb SINE Alu 0 315 3 2181 103 8 64 chr1 230020514 230020840 -12643513 - L1MB1 LINE L1 -60 6129 5822 305 182 18 0 chr1 230020841 230020896 -12643457 + L1M2 LINE L1 5710 5765 -547 285 270 101 20 chr1 230020896 230021044 -12643309 - MARNA DNA Mariner -241 345 186 2233 141 71 0 chr1 230022525 230022865 -12641488 + THE1B LTR MaLR 1 364 0 32 67 0 0 chr1 230023468 230023528 -12640825 + AT_rich Low_complexity Low_complexity 1 60 0 338 207 101 160 chr1 230023739 230023908 -12640445 + MIR3 SINE MIR 2 160 -48 332 260 31 0 chr1 230024019 230024115 -12640238 - Charlie8 DNA MER1_type -2259 158 60 30118 65 6 9 chr1 230024234 230028186 -12636167 - L1P LINE L1 -1398 4748 809 1149 81 17 35 chr1 230028322 230028496 -12635857 + THE1B LTR MaLR 194 364 0 843 178 7 33 chr1 230028555 230028707 -12635646 - FRAM SINE Alu -31 145 1 249 249 217 72 chr1 230030547 230030768 -12633585 - L2 LINE L2 -35 3237 2985 266 257 248 0 chr1 230031054 230031159 -12633194 + L2 LINE L2 3179 3309 -4 1420 191 0 0 chr1 230031202 230031432 -12632921 + Tigger7 DNA MER2_type 5 234 -2253 507 163 92 10 chr1 230031433 230031531 -12632822 + Tigger7 DNA MER2_type 2386 2491 0 220 254 63 0 chr1 230031712 230031775 -12632578 + MIR3 SINE MIR 119 185 -23 545 324 76 17 chr1 230031829 230032067 -12632286 + MIR SINE MIR 1 252 -10 25 0 0 0 chr1 230032998 230033023 -12631330 + AT_rich Low_complexity Low_complexity 1 25 0 1913 192 15 3 chr1 230033025 230033364 -12630989 - MER2 DNA MER2_type 0 344 2 351 332 79 20 chr1 230033637 230033839 -12630514 - MIR SINE MIR 0 262 49 3313 177 36 13 chr1 230033858 230034530 -12629823 - L1MA9 LINE L1 -313 5999 5313 2374 108 0 0 chr1 230034686 230034992 -12629361 - AluSx SINE Alu -6 306 1 868 217 44 0 chr1 230035527 230035707 -12628646 + MER3 DNA MER1_type 2 189 -20 246 333 53 18 chr1 230035835 230035949 -12628404 + MIR SINE MIR 95 212 -50 2319 107 0 0 chr1 230038640 230038949 -12625404 + AluSx SINE Alu 1 309 -3 306 87 0 2 chr1 230039005 230039062 -12625291 + AluSp/q SINE Alu 251 300 -3 261 329 24 0 chr1 230039494 230039576 -12624777 - L3 LINE CR1 -155 1422 1339 1945 126 0 0 chr1 230039684 230039954 -12624399 + AluSx SINE Alu 1 270 -42 461 86 57 0 chr1 230040059 230040129 -12624224 - AluS SINE Alu -238 75 2 284 344 32 13 chr1 230040679 230040833 -12623520 + MER5A DNA MER1_type 11 167 -22 * 404 329 13 7 chr1 230040709 230040864 -12623489 - MER5A DNA MER1_type -31 158 3 223 184 20 20 chr1 230041728 230041777 -12622576 + GA-rich Low_complexity Low_complexity 1 49 0 248 297 13 65 chr1 230041839 230041994 -12622359 - L1ME4a LINE L1 -11 6110 5964 968 120 8 0 chr1 230042264 230042397 -12621956 - AluSg/x SINE Alu -16 294 161 618 111 5 171 chr1 230042501 230042544 -12621809 - L1MC/D LINE L1 -925 5434 5385 1826 156 17 7 chr1 230042544 230042839 -12621514 - AluSx SINE Alu -14 298 1 618 111 5 171 chr1 230042839 230042982 -12621371 - L1MC/D LINE L1 -974 5385 5286 1991 105 11 0 chr1 230042982 230043259 -12621094 - AluSp SINE Alu -4 309 30 618 111 5 171 chr1 230043259 230043287 -12621066 - L1MC/D LINE L1 -1073 5286 5255 265 295 19 29 chr1 230043334 230043439 -12620914 - L2 LINE L2 -34 3279 3176 284 261 61 35 chr1 230044733 230044919 -12619434 + L1M4 LINE L1 5643 5833 -329 201 241 19 37 chr1 230045835 230045889 -12618464 + MER5B DNA MER1_type 91 143 -35 263 289 91 64 chr1 230046481 230046657 -12617696 + MIR3 SINE MIR 18 198 -10 215 196 0 0 chr1 230047286 230047332 -12617021 - L2 LINE L2 0 3313 3268 * 295 246 189 0 chr1 230047331 230047453 -12616900 - L2 LINE L2 -423 2891 2747 621 276 130 41 chr1 230047512 230047568 -12616785 - L2 LINE L2 -64 3249 3199 654 206 58 54 chr1 230047568 230047791 -12616562 - MER58A DNA MER1_type 0 224 1 621 276 130 41 chr1 230047791 230048198 -12616155 - L2 LINE L2 -114 3199 2747 364 163 122 32 chr1 230098841 230098994 -12565359 + L1MA7 LINE L1 5832 6010 -294 613 246 82 11 chr1 230098994 230099177 -12565176 + Charlie4 DNA MER1_type 1766 1961 0 301 277 128 21 chr1 230099829 230100017 -12564336 + L2 LINE L2 2709 2916 -398 256 279 0 9 chr1 230100275 230100386 -12563967 + CT-rich Low_complexity Low_complexity 2 111 0 324 83 0 0 chr1 230100404 230100452 -12563901 + (CA)n Simple_repeat Simple_repeat 1 48 0 392 134 52 0 chr1 230100557 230100691 -12563662 + (TA)n Simple_repeat Simple_repeat 1 141 0 275 241 24 48 chr1 230101474 230101557 -12562796 - L2 LINE L2 0 3313 3233 24 32 0 0 chr1 230102352 230102383 -12561970 + AT_rich Low_complexity Low_complexity 1 31 0 969 181 0 0 chr1 230102383 230102532 -12561821 - AluJb SINE Alu -27 285 137 2120 253 98 25 chr1 230104457 230105346 -12559007 + L1PBa LINE L1 2754 3670 -3895 533 239 36 14 chr1 230105344 230105482 -12558871 - L1 LINE L1 -3563 2583 2443 * 895 167 72 0 chr1 230105476 230105656 -12558697 + L1 LINE L1 2262 2454 -3692 2885 165 18 2 chr1 230105657 230106160 -12558193 - MER6 DNA MER2_type 0 865 355 2017 120 7 7 chr1 230106752 230107044 -12557309 + AluSc SINE Alu 1 292 -17 2455 253 101 55 chr1 230108112 230108397 -12555956 + L1M4b LINE L1 11 282 -6677 5463 73 6 6 chr1 230108397 230109057 -12555296 + PABL_A LTR ERV1 1 660 0 2455 253 101 55 chr1 230109057 230109208 -12555145 + L1M4b LINE L1 282 425 -6534 2176 81 10 20 chr1 230109208 230109506 -12554847 + AluY SINE Alu 1 295 -16 2455 253 101 55 chr1 230109506 230111164 -12553189 + L1M4b LINE L1 425 2416 -4543 1793 169 0 18 chr1 230111430 230111743 -12552610 + AluJb SINE Alu 5 312 0 1082 262 7 7 chr1 230111787 230112085 -12552268 + L1M4b LINE L1 3305 3602 -3355 2503 93 60 6 chr1 230112118 230112471 -12551882 + MLT2A1 LTR ERVL 1 372 -72 427 197 4 57 chr1 230112736 230113025 -12551328 + (TGG)n Simple_repeat Simple_repeat 1 273 0 492 158 11 63 chr1 230113036 230113226 -12551127 + (TGG)n Simple_repeat Simple_repeat 1 180 0 194 196 0 56 chr1 230113261 230113368 -12550985 + (TGG)n Simple_repeat Simple_repeat 2 102 0 358 179 0 92 chr1 230113423 230113607 -12550746 + (TGG)n Simple_repeat Simple_repeat 1 167 0 341 199 0 75 chr1 230113639 230113825 -12550528 + (TGG)n Simple_repeat Simple_repeat 1 172 0 2375 78 10 0 chr1 230114128 230114434 -12549919 + AluSc SINE Alu 1 309 0 214 368 11 11 chr1 230115060 230115147 -12549206 - L3 LINE CR1 -51 1526 1440 379 349 98 39 chr1 230115705 230116091 -12548262 + L2 LINE L2 2787 3197 -75 331 229 133 0 chr1 230116342 230116425 -12547928 + MIR SINE MIR 166 259 -3 201 39 0 0 chr1 230117134 230117160 -12547193 + (TG)n Simple_repeat Simple_repeat 2 27 0 1039 301 66 3 chr1 230118534 230118900 -12545453 + MLT1I LTR MaLR 10 398 -11 2274 87 13 0 chr1 230119645 230119943 -12544410 + AluY SINE Alu 1 302 -9 783 349 28 9 chr1 230120558 230120876 -12543477 + MLT1I LTR MaLR 37 360 -49 1008 240 96 60 chr1 230120930 230121146 -12543207 + MLT1L LTR MaLR 107 314 -301 1683 210 43 46 chr1 230121146 230121537 -12542816 - MLT1B LTR MaLR 0 390 1 1008 240 96 60 chr1 230121537 230121766 -12542587 + MLT1L LTR MaLR 314 568 -47 262 210 57 121 chr1 230122029 230122186 -12542167 - MLT1H LTR MaLR -400 149 3 445 181 0 0 chr1 230122200 230122272 -12542081 - MLT1B LTR MaLR -50 340 269 281 294 23 18 chr1 230122401 230122532 -12541821 + MIR SINE MIR 16 145 -63 513 116 39 18 chr1 230122978 230123266 -12541087 + (TA)n Simple_repeat Simple_repeat 1 294 0 395 130 40 28 chr1 230123284 230123461 -12540892 + (TA)n Simple_repeat Simple_repeat 2 180 0 195 399 46 7 chr1 230123927 230124080 -12540273 - L2 LINE L2 -667 2647 2489 322 214 0 0 chr1 230124207 230124263 -12540090 + L2 LINE L2 3257 3312 -1 46 0 0 0 chr1 230124883 230124929 -12539424 + AT_rich Low_complexity Low_complexity 1 46 0 2225 99 7 3 chr1 230125021 230125324 -12539029 - AluSq SINE Alu -7 306 3 1657 148 19 61 chr1 230125792 230126103 -12538250 + AluJb SINE Alu 1 298 -14 2181 66 6 72 chr1 230126290 230126609 -12537744 - AluY SINE Alu -13 298 1 713 137 0 174 chr1 230126658 230126819 -12537534 + FLAM_A SINE Alu 1 133 0 2210 111 3 0 chr1 230127322 230127619 -12536734 + AluSq SINE Alu 7 304 -9 952 207 24 39 chr1 230127699 230127907 -12536446 + MER63A DNA MER1_type 6 210 0 903 151 198 28 chr1 230129318 230129530 -12534823 - L1MC4 LINE L1 0 8042 7795 962 222 71 15 chr1 230129531 230129969 -12534384 - MER4C LTR ERV1 0 465 76 297 182 0 36 chr1 230129964 230130019 -12534334 - MER21B LTR ERV1 -792 71 19 * 343 149 19 131 chr1 230130017 230130124 -12534229 - MER21B LTR ERV1 -757 106 12 1142 157 11 113 chr1 230130153 230130231 -12534122 - L1MC4 LINE L1 -1024 7018 6934 2235 105 0 7 chr1 230130231 230130547 -12533806 - AluSx SINE Alu 0 312 1 1142 157 11 113 chr1 230130547 230130742 -12533611 - L1MC4 LINE L1 -1108 6934 6773 2207 109 3 3 chr1 230131043 230131336 -12533017 + AluSx SINE Alu 1 293 -19 2424 77 0 0 chr1 230131338 230131637 -12532716 + AluY SINE Alu 1 299 -12 279 0 0 0 chr1 230131640 230131646 -12532707 + (TG)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr1 230131646 230131677 -12532676 + (TG)n Simple_repeat Simple_repeat 2 32 0 426 273 8 8 chr1 230132134 230132266 -12532087 + MER58C DNA MER1_type 1 132 -83 339 234 0 26 chr1 230132284 230132361 -12531992 + MER58C DNA MER1_type 138 212 -3 492 198 50 10 chr1 230132410 230132538 -12531815 - MIR SINE MIR -61 147 26 243 88 0 0 chr1 230132584 230132618 -12531735 + (T)n Simple_repeat Simple_repeat 1 34 0 2501 56 0 7 chr1 230134852 230135156 -12529197 - AluY SINE Alu -9 302 1 5361 58 0 6 chr1 230135282 230135915 -12528438 - L1PA6 LINE L1 0 6154 5526 4961 214 36 5 chr1 230136173 230137045 -12527308 - L1PA8 LINE L1 -6 6166 5268 1843 158 0 27 chr1 230137099 230137412 -12526941 - AluJo SINE Alu 0 305 1 1427 182 0 4 chr1 230138279 230138515 -12525838 + AluJo SINE Alu 1 235 -77 477 262 73 9 chr1 230138931 230139142 -12525211 - MLT1I LTR MaLR 0 409 86 196 248 14 128 chr1 230139639 230139780 -12524573 + MIR SINE MIR 67 191 -71 2248 198 84 30 chr1 230139984 230140171 -12524182 - L1MD2 LINE L1 0 6359 6183 189 0 0 0 chr1 230140171 230140192 -12524161 + (TG)n Simple_repeat Simple_repeat 2 22 0 2248 198 84 30 chr1 230140192 230140378 -12523975 - L1MD2 LINE L1 -176 6183 6008 1952 156 0 19 chr1 230140378 230140692 -12523661 - AluJo SINE Alu 0 312 5 2248 198 84 30 chr1 230140692 230140842 -12523511 - L1MD2 LINE L1 -351 6008 5807 719 196 50 15 chr1 230142847 230143032 -12521321 + L1ME LINE L1 5297 5494 -657 * 1100 199 38 29 chr1 230143020 230143336 -12521017 + L1M4 LINE L1 4369 4687 -1459 180 0 0 0 chr1 230143436 230143456 -12520897 + (C)n Simple_repeat Simple_repeat 1 20 0 554 286 139 55 chr1 230144070 230144472 -12519881 + MLT1H LTR MaLR 114 549 0 355 75 0 3 chr1 230145050 230145104 -12519249 - AluSc SINE Alu -115 184 139 333 239 92 18 chr1 230145279 230145388 -12518965 - L2 LINE L2 -482 2832 2716 570 75 42 8 chr1 230145402 230145522 -12518831 + (TA)n Simple_repeat Simple_repeat 1 124 0 273 145 23 30 chr1 230145543 230145674 -12518679 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 * 312 113 83 12 chr1 230145647 230145815 -12518538 + (TA)n Simple_repeat Simple_repeat 1 180 0 2102 125 3 3 chr1 230145824 230146113 -12518240 - AluSc SINE Alu -20 289 1 216 323 0 0 chr1 230146115 230146177 -12518176 - L2 LINE L2 -601 2713 2652 231 294 82 12 chr1 230147448 230147533 -12516820 - MIR3 SINE MIR -6 202 112 266 342 27 9 chr1 230147795 230147906 -12516447 - L2 LINE L2 -1 3312 3200 983 297 101 18 chr1 230148918 230149609 -12514744 - L2 LINE L2 -1 3312 2548 1624 200 3 7 chr1 230149695 230150000 -12514353 - AluJo SINE Alu -8 304 1 455 189 11 0 chr1 230150412 230150502 -12513851 - L1MB2 LINE L1 -5 6166 6076 2557 99 88 48 chr1 230152242 230152684 -12511669 + MER4C LTR ERV1 6 465 0 837 134 0 75 chr1 230152886 230153020 -12511333 + FLAM_C SINE Alu 1 124 -19 2245 105 3 0 chr1 230153041 230153337 -12511016 - AluSx SINE Alu -15 297 1 448 155 14 0 chr1 230153496 230153567 -12510786 - THE1C LTR MaLR 0 375 304 1070 9 0 0 chr1 230153671 230153787 -12510566 - AluYb8 SINE Alu -202 116 1 1902 136 19 19 chr1 230153787 230154103 -12510250 - THE1C LTR MaLR -59 316 1 800 331 41 53 chr1 230154330 230155186 -12509167 + L2 LINE L2 1328 2173 -1141 2048 211 94 41 chr1 230155417 230156339 -12508014 + L1MB7 LINE L1 4601 5586 -598 1221 248 16 91 chr1 230156339 230156779 -12507574 + MER21B LTR ERV1 1 407 -456 2593 175 40 63 chr1 230156815 230157416 -12506937 + L1MB7 LINE L1 5582 6168 -16 1867 102 24 102 chr1 230158219 230158552 -12505801 - AluYb8 SINE Alu -11 307 1 2087 124 84 35 chr1 230159102 230159449 -12504904 - THE1B LTR MaLR 0 364 1 2458 79 0 13 chr1 230160319 230160635 -12503718 - AluSp SINE Alu -1 312 1 279 0 0 0 chr1 230160717 230160748 -12503605 + (CA)n Simple_repeat Simple_repeat 2 32 0 1036 184 18 2 chr1 230161441 230161655 -12502698 + L1MB7 LINE L1 5804 6032 -138 252 209 90 15 chr1 230162429 230162496 -12501857 - MER116 DNA Mariner 0 80 9 206 383 22 11 chr1 230162736 230162916 -12501437 - L2 LINE L2 -404 2910 2729 658 306 94 32 chr1 230164092 230164606 -12499747 + L2 LINE L2 2657 3250 -63 501 255 21 21 chr1 230164706 230164851 -12499502 + L2 LINE L2 3156 3300 -13 2161 93 29 0 chr1 230164919 230165197 -12499156 - AluSx SINE Alu -26 286 1 1939 165 0 0 chr1 230165448 230165751 -12498602 - AluSx SINE Alu -9 303 1 2535 207 21 21 chr1 230167043 230167554 -12496799 - LTR31 LTR ERV1 0 619 109 1956 148 3 14 chr1 230169269 230169566 -12494787 + AluJo SINE Alu 1 294 -18 256 300 73 18 chr1 230169692 230169802 -12494551 + MIR SINE MIR 26 141 -67 386 301 116 10 chr1 230171546 230171745 -12492608 - ERVL LTR ERVL -310 5454 5235 750 301 152 26 chr1 230171824 230172166 -12492187 - L2 LINE L2 -1988 1326 942 909 234 36 9 chr1 230172380 230172602 -12491751 + MIR SINE MIR 35 262 0 184 346 30 20 chr1 230173252 230173353 -12491000 - L2 LINE L2 -360 2912 2811 230 257 0 71 chr1 230173412 230173482 -12490871 - L2 LINE L2 -642 2672 2608 1016 76 0 122 chr1 230173505 230173573 -12490780 - L1P5 LINE L1 -494 5660 5585 2348 99 3 0 chr1 230173573 230173876 -12490477 - AluSp SINE Alu -7 306 3 1016 76 0 122 chr1 230173876 230173979 -12490374 - L1P5 LINE L1 -569 5585 5510 450 73 15 0 chr1 230173979 230174039 -12490314 + L1PB3 LINE L1 6085 6153 -1 2251 204 5 10 chr1 230174249 230174642 -12489711 - MER6 DNA MER2_type -474 391 1 14416 165 30 28 chr1 230174642 230174662 -12489691 + L1MA7 LINE L1 2454 2472 -3819 3756 199 22 62 chr1 230174662 230175672 -12488681 - LTR5 LTR ERVK 0 969 1 14416 165 30 28 chr1 230175672 230177916 -12486437 + L1MA7 LINE L1 2472 4724 -1567 2217 120 0 7 chr1 230177916 230178217 -12486136 + AluSx SINE Alu 1 299 -13 14416 165 30 28 chr1 230178217 230179490 -12484863 + L1MA7 LINE L1 4724 5994 -297 616 255 76 11 chr1 230179497 230179681 -12484672 + Charlie4 DNA MER1_type 1766 1961 0 350 308 47 35 chr1 230179754 230179923 -12484430 + MIR SINE MIR 2 172 -90 333 254 42 0 chr1 230179959 230180030 -12484323 + MER82 DNA MER2_type 1 74 -579 1085 166 28 0 chr1 230180102 230180283 -12484070 + MER82 DNA MER2_type 5 190 -463 2459 72 0 3 chr1 230180285 230180589 -12483764 + AluY SINE Alu 1 303 -8 587 53 0 13 chr1 230180599 230180675 -12483678 + MADE1 DNA Mariner 1 75 -5 1951 197 100 17 chr1 230180679 230181100 -12483253 + MER82 DNA MER2_type 198 653 0 181 238 98 74 chr1 230181155 230181277 -12483076 - L2 LINE L2 -2815 499 375 309 301 182 15 chr1 230181942 230182145 -12482208 + L3 LINE CR1 1316 1552 -25 2098 146 42 78 chr1 230182145 230182223 -12482130 - MLT2D LTR ERVL 0 414 335 207 69 0 0 chr1 230182223 230182252 -12482101 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2098 146 42 78 chr1 230182252 230182599 -12481754 - MLT2D LTR ERVL -79 335 4 1939 137 33 113 chr1 230185071 230185495 -12478858 - MLT2D LTR ERVL 0 414 25 183 333 148 46 chr1 230185969 230186206 -12478147 - L2 LINE L2 -97 3175 2915 5016 182 50 17 chr1 230186218 230187269 -12477084 + L1MC3 LINE L1 6701 7785 0 383 295 31 26 chr1 230187269 230187474 -12476879 - L2 LINE L2 -352 2920 2716 1907 172 61 32 chr1 230187477 230187854 -12476499 - MSTC LTR MaLR 0 428 41 342 113 56 0 chr1 230187854 230187925 -12476428 - L1PA15 LINE L1 0 6165 6091 3436 166 33 6 chr1 230188029 230188907 -12475446 - L1P4 LINE L1 -649 5516 4615 796 203 0 0 chr1 230189173 230189301 -12475052 + FLAM_C SINE Alu 2 129 -4 420 95 63 0 chr1 230189990 230190053 -12474300 - MSTC LTR MaLR -360 68 2 333 267 138 0 chr1 230190305 230190421 -12473932 - L2 LINE L2 0 3313 3182 299 164 0 18 chr1 230191737 230191792 -12472561 + MER116 DNA Mariner 1 54 -26 849 193 0 0 chr1 230192656 230192801 -12471552 - FRAM SINE Alu -30 146 2 765 278 51 41 chr1 230193027 230193441 -12470912 - HAL1 LINE L1 -40 2467 2050 22 35 0 0 chr1 230193444 230193473 -12470880 + AT_rich Low_complexity Low_complexity 1 29 0 6125 155 22 14 chr1 230193473 230195586 -12468767 - L1PB1 LINE L1 -9 6142 4011 1982 122 28 10 chr1 230195586 230195908 -12468445 - AluSx SINE Alu 0 312 1 6125 155 22 14 chr1 230195908 230195939 -12468414 - L1PB1 LINE L1 -2140 4011 3982 3712 269 102 35 chr1 230195949 230197173 -12467180 - HAL1 LINE L1 -440 2067 685 1542 188 50 11 chr1 230197173 230197450 -12466903 - AluJo SINE Alu -24 288 1 3712 269 102 35 chr1 230197450 230197991 -12466362 - HAL1 LINE L1 -1822 685 182 1386 271 147 76 chr1 230198082 230198136 -12466217 - L2 LINE L2 0 3313 3264 2325 158 30 23 chr1 230198136 230198565 -12465788 - MSTB1 LTR MaLR 0 432 1 1386 271 147 76 chr1 230198565 230199018 -12465335 - L2 LINE L2 -49 3264 2845 207 88 0 0 chr1 230199018 230199052 -12465301 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5309 31 7 0 chr1 230199052 230199671 -12464682 - L1PA3 LINE L1 -5 6150 5528 532 0 0 0 chr1 230199671 230199737 -12464616 + L1P LINE L1 5338 5403 -752 1386 271 147 76 chr1 230199737 230200396 -12463957 - L2 LINE L2 -467 2846 1992 2521 178 249 69 chr1 230200727 230201592 -12462761 - LTR28 LTR ERV1 0 1020 1 542 235 73 49 chr1 230202256 230202573 -12461780 - MLT1J2 LTR MaLR -23 427 72 249 275 32 53 chr1 230203876 230204065 -12460288 - HAL1 LINE L1 -5 2502 2318 1652 190 83 7 chr1 230204561 230204992 -12459361 - Charlie1b DNA MER1_type -23 500 37 1856 141 108 47 chr1 230205240 230205666 -12458687 + MSTB2 LTR MaLR 1 452 -5 438 294 58 15 chr1 230205804 230206082 -12458271 - L1MC/D LINE L1 -559 5603 5302 333 265 93 84 chr1 230206196 230206411 -12457942 + MIR SINE MIR 12 228 -34 739 268 39 24 chr1 230206659 230206913 -12457440 - MIR SINE MIR 0 262 5 462 289 103 34 chr1 230207297 230208055 -12456298 - L1ME LINE L1 -361 5803 4997 301 330 62 28 chr1 230208232 230208408 -12455945 - L1ME LINE L1 -1369 4777 4596 244 224 0 0 chr1 230208461 230208519 -12455834 - L1ME LINE L1 -1602 4544 4487 1338 194 142 70 chr1 230208529 230208979 -12455374 + MLT2B1 LTR ERVL 1 490 -30 276 100 0 0 chr1 230208979 230209019 -12455334 + (CA)n Simple_repeat Simple_repeat 1 40 0 1338 194 142 70 chr1 230209019 230209053 -12455300 + MLT2B1 LTR ERVL 490 520 0 3281 204 27 138 chr1 230209066 230210524 -12453829 + MLT1B-int LTR MaLR 75 1370 -1 235 247 0 37 chr1 230210572 230210653 -12453700 + MLT1B LTR MaLR 95 172 -202 291 106 45 0 chr1 230210657 230210723 -12453630 + CT-rich Low_complexity Low_complexity 1 69 0 891 203 36 0 chr1 230210738 230210930 -12453423 + MLT1B LTR MaLR 192 390 0 207 0 0 0 chr1 230210954 230210977 -12453376 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 38793 65 4 4 chr1 230210977 230217109 -12447244 - L1PA5 LINE L1 -12 6142 11 21 36 0 0 chr1 230217198 230217226 -12447127 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 230217574 230217602 -12446751 + AT_rich Low_complexity Low_complexity 1 28 0 1448 174 34 6 chr1 230217682 230218003 -12446350 - L1MB8 LINE L1 -1 6177 5848 4474 273 72 31 chr1 230218004 230219038 -12445315 - L1 LINE L1 -1007 5139 4149 2065 142 0 3 chr1 230219038 230219334 -12445019 - AluSx SINE Alu -17 295 1 4474 273 72 31 chr1 230219334 230219665 -12444688 - L1 LINE L1 -1997 4149 3833 1858 180 3 16 chr1 230219665 230219981 -12444372 - AluJb SINE Alu 0 312 1 4474 273 72 31 chr1 230219981 230220849 -12443504 - L1 LINE L1 -2313 3833 2813 303 82 0 49 chr1 230220860 230220921 -12443432 - MLT2A2 LTR ERVL 0 453 396 1302 257 75 13 chr1 230221082 230221640 -12442713 + L1ME3A LINE L1 4877 5399 -771 2190 76 7 23 chr1 230221640 230221943 -12442410 + AluY SINE Alu 1 298 -13 1302 257 75 13 chr1 230221943 230222471 -12441882 + L1ME3A LINE L1 5399 6055 -115 373 286 121 20 chr1 230223647 230223846 -12440507 - L1MB8 LINE L1 -445 5676 5458 304 259 78 0 chr1 230223898 230224014 -12440339 - L1MB8 LINE L1 -795 5389 5265 909 255 56 5 chr1 230224171 230224387 -12439966 - MIR SINE MIR 0 262 36 489 306 38 12 chr1 230225404 230225564 -12438789 - L2 LINE L2 -1 3312 3149 304 251 40 11 chr1 230225638 230225813 -12438540 + (TA)n Simple_repeat Simple_repeat 1 180 0 454 253 7 75 chr1 230225880 230225994 -12438359 + MER5B DNA MER1_type 8 111 -67 2163 94 13 10 chr1 230225994 230226303 -12438050 - AluSx SINE Alu -2 310 1 454 253 7 75 chr1 230226303 230226334 -12438019 + MER5B DNA MER1_type 111 143 -35 345 279 162 7 chr1 230226344 230226480 -12437873 - L2 LINE L2 -220 3093 2937 879 157 7 0 chr1 230226508 230226661 -12437692 + L1MA3 LINE L1 6152 6305 0 2288 160 127 10 chr1 230226740 230227235 -12437118 - MER68 LTR ERV1 -8 554 2 219 129 0 0 chr1 230227451 230227482 -12436871 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 751 221 0 0 chr1 230227485 230227793 -12436560 - FLAM_A SINE Alu 0 308 1 191 227 0 0 chr1 230228244 230228288 -12436065 - L2 LINE L2 -3 3310 3267 463 355 48 28 chr1 230228485 230228882 -12435471 - L2 LINE L2 -1178 2136 1732 280 243 0 0 chr1 230229442 230229512 -12434841 - MER116 DNA Mariner 0 80 11 246 232 18 0 chr1 230229522 230229578 -12434775 + MIR SINE MIR 152 208 -54 190 265 20 0 chr1 230229720 230229769 -12434584 + L3b LINE CR1 1287 1336 -247 1526 172 35 24 chr1 230229846 230230136 -12434217 - AluJo SINE Alu -19 293 1 245 258 117 55 chr1 230230204 230230332 -12434021 + MIR SINE MIR 108 243 -19 346 192 14 0 chr1 230230844 230230917 -12433436 + Tigger7 DNA MER2_type 1 74 -265 1069 162 64 47 chr1 230230933 230230951 -12433402 - Tigger7 DNA MER2_type -238 312 296 2316 74 0 0 chr1 230230951 230231358 -12432995 + AluSc SINE Alu 1 407 0 1069 162 64 47 chr1 230231358 230231571 -12432782 - Tigger7 DNA MER2_type -254 296 75 * 1578 135 74 15 chr1 230231569 230231593 -12432760 + Tigger7 DNA MER2_type 2243 2264 -323 186 43 0 0 chr1 230231593 230231616 -12432737 + (CATCT)n Simple_repeat Simple_repeat 2 24 0 1578 135 74 15 chr1 230231616 230231917 -12432436 + Tigger7 DNA MER2_type 2264 2587 0 965 175 9 37 chr1 230232733 230232950 -12431403 - L1MA10 LINE L1 -1 6333 6123 261 306 136 71 chr1 230233044 230233426 -12430927 + L2 LINE L2 2865 3271 -1 2595 171 54 57 chr1 230234280 230234627 -12429726 - L1MA9 LINE L1 -37 6275 5929 2169 120 3 13 chr1 230234627 230234943 -12429410 - AluSq SINE Alu 0 313 1 2595 171 54 57 chr1 230234943 230235262 -12429091 - L1MA9 LINE L1 -383 5929 5611 351 243 238 16 chr1 230236020 230236205 -12428148 - L2 LINE L2 -4 3309 3084 585 283 96 46 chr1 230236712 230236866 -12427487 - L1M4c LINE L1 -3531 2851 2706 1819 132 85 3 chr1 230236866 230237184 -12427169 - MER2 DNA MER2_type 0 344 1 585 283 96 46 chr1 230237184 230237570 -12426783 - L1M4c LINE L1 -3676 2706 2279 2363 69 3 69 chr1 230238738 230239073 -12425280 - AluSp SINE Alu 0 313 1 305 306 100 22 chr1 230239212 230239392 -12424961 - HAL1 LINE L1 -898 1609 1416 745 227 27 16 chr1 230240028 230240213 -12424140 - MER5A DNA MER1_type -2 187 1 1518 286 120 29 chr1 230240762 230241427 -12422926 - L2 LINE L2 -453 2861 2136 214 325 13 52 chr1 230241502 230241579 -12422774 + L3 LINE CR1 1485 1558 -19 510 17 0 0 chr1 230244331 230244390 -12419963 + (TTA)n Simple_repeat Simple_repeat 3 61 0 6053 52 7 17 chr1 230244390 230245199 -12419154 - L1PA7 LINE L1 -18 6136 5336 289 254 189 16 chr1 230245204 230245326 -12419027 + HAL1b LINE L1 475 617 -731 834 136 0 8 chr1 230245475 230245600 -12418753 + AluJo SINE Alu 11 134 -178 1639 152 0 91 chr1 230245783 230245930 -12418423 + AluJb SINE Alu 1 103 -209 2414 51 37 0 chr1 230245930 230246225 -12418128 + AluY SINE Alu 1 306 -5 1639 152 0 91 chr1 230246225 230246406 -12417947 + AluJb SINE Alu 103 299 -13 572 243 192 54 chr1 230246426 230246724 -12417629 + L1MC4a LINE L1 6502 6890 -984 1215 218 99 3 chr1 230247034 230247346 -12417007 + MER2 DNA MER2_type 2 343 -1 225 0 0 0 chr1 230247532 230247557 -12416796 + (ATG)n Simple_repeat Simple_repeat 2 26 0 899 167 0 0 chr1 230247574 230247712 -12416641 - AluSg/x SINE Alu -23 287 150 425 344 86 29 chr1 230247719 230248277 -12416076 + L1ME LINE L1 4729 5318 -828 513 302 52 22 chr1 230248371 230248603 -12415750 + L1ME LINE L1 5463 5701 -420 3176 190 36 28 chr1 230248608 230249297 -12415056 + L1MB8 LINE L1 5477 6171 -7 778 266 131 4 chr1 230249339 230249613 -12414740 + L2 LINE L2 2541 2849 -465 510 311 50 8 chr1 230250672 230250913 -12413440 - L1ME4a LINE L1 -296 5825 5575 1975 96 8 0 chr1 230251452 230251702 -12412651 + AluSq SINE Alu 1 252 -61 432 223 45 18 chr1 230252678 230252790 -12411563 + MER94 DNA DNA 20 134 0 638 276 25 10 chr1 230253323 230253526 -12410827 - MIR SINE MIR -26 236 31 870 119 71 0 chr1 230253633 230253759 -12410594 + AluJb SINE Alu 1 135 -177 1110 152 0 34 chr1 230253789 230253967 -12410386 + AluJb SINE Alu 118 289 -23 216 0 0 0 chr1 230254535 230254559 -12409794 + (A)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 230255607 230255630 -12408723 + (TGAG)n Simple_repeat Simple_repeat 2 24 0 383 137 14 0 chr1 230256226 230256299 -12408054 + CT-rich Low_complexity Low_complexity 2 75 0 481 247 6 6 chr1 230256336 230256514 -12407839 + CT-rich Low_complexity Low_complexity 1 178 0 201 167 33 17 chr1 230256538 230256598 -12407755 + CT-rich Low_complexity Low_complexity 1 61 0 423 0 0 0 chr1 230257187 230257234 -12407119 + (TG)n Simple_repeat Simple_repeat 2 48 0 807 170 15 0 chr1 230257698 230257833 -12406520 - BC200 scRNA scRNA -62 138 2 3142 92 23 2 chr1 230257859 230258295 -12406058 - L1PB3 LINE L1 0 6154 5710 1883 106 32 14 chr1 230258297 230258580 -12405773 - L1MC1 LINE L1 0 6333 6046 286 263 13 0 chr1 230259430 230259506 -12404847 - MIR SINE MIR -107 155 79 234 197 70 28 chr1 230259888 230259959 -12404394 - MIR SINE MIR -71 191 118 485 312 35 25 chr1 230260041 230260243 -12404110 - MER58A DNA MER1_type -2 222 19 1933 197 11 8 chr1 230261038 230261394 -12402959 - MLT2B1 LTR ERVL -48 472 116 2324 75 0 0 chr1 230261746 230262054 -12402299 - AluY SINE Alu 0 308 1 606 229 59 0 chr1 230263062 230263215 -12401138 + MER5A DNA MER1_type 1 162 -27 * 612 291 6 0 chr1 230263212 230263370 -12400983 - MER5B DNA MER1_type -19 159 1 1722 117 110 0 chr1 230263631 230263913 -12400440 + L1MA5A LINE L1 5969 6281 -16 1972 123 25 0 chr1 230264227 230264503 -12399850 - AluSx SINE Alu -19 293 11 2114 153 21 0 chr1 230264542 230264876 -12399477 - MER7A DNA MER2_type -7 339 1 479 262 38 13 chr1 230264876 230265047 -12399306 - L1MD3 LINE L1 -14 7947 7621 853 270 12 16 chr1 230265221 230265473 -12398880 - MIR SINE MIR -3 259 9 539 284 32 21 chr1 230266398 230266588 -12397765 - MIR SINE MIR 0 262 71 1114 130 0 0 chr1 230267514 230267668 -12396685 + FRAM SINE Alu 13 166 -10 220 375 0 19 chr1 230268681 230268785 -12395568 + MER5A DNA MER1_type 45 146 -43 2465 116 5 27 chr1 230268960 230269332 -12395021 + THE1B LTR MaLR 1 364 0 291 247 82 0 chr1 230269537 230269622 -12394731 - MER110 LTR ERV1 -44 447 356 237 348 43 0 chr1 230270062 230270177 -12394176 - MARNA DNA Mariner -410 176 57 528 182 110 7 chr1 230270460 230270614 -12393739 - L1MC1 LINE L1 -16 6317 6148 996 163 158 9 chr1 230270720 230270941 -12393412 - L1MC1 LINE L1 -167 6166 5913 1238 121 5 62 chr1 230271360 230271584 -12392769 - L1MA5A LINE L1 -3 6294 6084 22 0 0 0 chr1 230272751 230272773 -12391580 + AT_rich Low_complexity Low_complexity 1 22 0 727 222 35 30 chr1 230272773 230273003 -12391350 - L1MC5 LINE L1 -23 7938 7708 1557 165 15 15 chr1 230273003 230273270 -12391083 + AluSx SINE Alu 1 267 -45 2302 203 54 96 chr1 230273432 230274230 -12390123 - L1MC5 LINE L1 -385 7576 6823 207 0 0 0 chr1 230274230 230274253 -12390100 + (ATTG)n Simple_repeat Simple_repeat 3 25 0 2302 203 54 96 chr1 230274253 230274398 -12389955 - L1MC5 LINE L1 -1138 6823 6673 1499 258 119 8 chr1 230274407 230274895 -12389458 - L1MC1 LINE L1 -2012 5796 5255 22 35 0 0 chr1 230274905 230274934 -12389419 + AT_rich Low_complexity Low_complexity 1 29 0 2088 143 3 3 chr1 230274956 230275257 -12389096 - AluSx SINE Alu -11 301 1 458 187 9 56 chr1 230276765 230276872 -12387481 + MER5A DNA MER1_type 4 105 -84 227 170 19 38 chr1 230278692 230278745 -12385608 - MIR SINE MIR -60 202 151 12257 173 32 70 chr1 230279326 230279892 -12384461 + L1PB1 LINE L1 1 587 -6280 2333 77 0 7 chr1 230279892 230280190 -12384163 + AluY SINE Alu 1 296 -15 12257 173 32 70 chr1 230280190 230282717 -12381636 + L1PB1 LINE L1 587 3208 -3659 2024 143 11 66 chr1 230282717 230283080 -12381273 - LTR3b LTR ERVK 0 500 158 12257 173 32 70 chr1 230283080 230286536 -12377817 + L1PB1 LINE L1 3208 6860 -7 218 303 67 0 chr1 230287459 230287578 -12376775 + L2 LINE L2 2934 3060 -253 2292 129 33 30 chr1 230287627 230287990 -12376363 + THE1B LTR MaLR 1 364 0 2693 158 21 31 chr1 230287990 230288472 -12375881 + MER66B LTR ERV1 10 486 0 218 247 24 59 chr1 230288492 230288577 -12375776 + L2 LINE L2 3167 3248 -65 2195 160 97 62 chr1 230288577 230288594 -12375759 - MER67A LTR ERV1 0 543 528 2259 115 0 6 chr1 230288594 230288906 -12375447 + AluSx SINE Alu 1 310 -2 2195 160 97 62 chr1 230288906 230289406 -12374947 - MER67A LTR ERV1 -15 528 8 285 228 0 0 chr1 230289411 230289468 -12374885 + L2 LINE L2 3256 3312 -1 1584 179 58 0 chr1 230290260 230290551 -12373802 - L1M4 LINE L1 -449 5735 5428 1028 161 47 0 chr1 230290568 230290779 -12373574 - L1MA7 LINE L1 -5 6286 6066 4115 144 14 26 chr1 230290779 230290875 -12373478 + L1M2 LINE L1 4679 4775 -1516 1783 192 0 25 chr1 230290875 230291193 -12373160 + AluJo SINE Alu 1 310 -2 4115 144 14 26 chr1 230291193 230292133 -12372220 + L1M2 LINE L1 4775 5704 -587 1164 147 26 0 chr1 230292127 230292382 -12371971 - L1M4 LINE L1 -743 5403 5181 * 189 342 53 0 chr1 230292882 230292958 -12371395 + L3b LINE CR1 1504 1583 0 683 115 0 0 chr1 230293773 230293869 -12370484 + AluY SINE Alu 206 301 -10 1993 91 7 62 chr1 230293891 230294200 -12370153 + L1PA11 LINE L1 5717 6008 -166 2173 122 3 0 chr1 230295367 230295662 -12368691 + AluSg SINE Alu 1 296 -14 569 266 155 3 chr1 230295958 230296248 -12368105 - L1ME4a LINE L1 -262 5859 5526 725 96 0 0 chr1 230297308 230297402 -12366951 + AluSg/x SINE Alu 192 285 -27 350 202 0 20 chr1 230299309 230299408 -12364945 + CT-rich Low_complexity Low_complexity 2 98 0 727 227 29 23 chr1 230299496 230299668 -12364685 - MIR SINE MIR 0 262 90 239 205 0 0 chr1 230299770 230299809 -12364544 - L2 LINE L2 -19 3294 3256 627 149 39 0 chr1 230300807 230300961 -12363392 + CT-rich Low_complexity Low_complexity 4 163 0 1592 177 3 44 chr1 230301217 230301534 -12362819 + AluJo SINE Alu 1 304 -8 193 324 57 29 chr1 230301560 230301665 -12362688 - MIR3 SINE MIR -53 155 48 2153 119 72 20 chr1 230303456 230303801 -12360552 + THE1B LTR MaLR 2 364 0 11494 98 18 14 chr1 230303801 230305374 -12358979 + THE1B-int LTR MaLR 1 1580 0 2311 90 72 20 chr1 230305374 230305720 -12358633 + THE1B LTR MaLR 1 364 0 429 279 90 29 chr1 230305953 230306197 -12358156 + MIR SINE MIR 3 261 -1 2085 136 0 0 chr1 230307500 230307808 -12356545 + AluJb SINE Alu 5 312 0 2115 178 62 27 chr1 230310277 230310338 -12354015 - MSTB1 LTR MaLR -13 419 362 2649 20 0 0 chr1 230310338 230310641 -12353712 + AluYa5 SINE Alu 1 303 -8 2115 178 62 27 chr1 230310641 230310984 -12353369 - MSTB1 LTR MaLR -70 362 1 261 288 18 18 chr1 230311530 230311641 -12352712 + L1P LINE L1 4533 4643 -1503 657 295 112 92 chr1 230311641 230312044 -12352309 + L1MB3 LINE L1 4692 5110 -1036 1983 134 7 0 chr1 230312044 230312335 -12352018 - AluSx SINE Alu -19 293 1 657 295 112 92 chr1 230312335 230312484 -12351869 + L1MB3 LINE L1 5110 5255 -891 362 268 8 16 chr1 230312491 230312614 -12351739 + L1MB3 LINE L1 5294 5415 -2393 213 182 45 0 chr1 230312995 230313039 -12351314 + CT-rich Low_complexity Low_complexity 5 50 0 949 185 22 0 chr1 230313718 230313896 -12350457 + L1MB3 LINE L1 5648 5829 -342 1489 200 19 16 chr1 230313898 230314316 -12350037 + AluJo SINE Alu 1 419 0 1963 139 56 0 chr1 230314367 230314706 -12349647 + L1MB3 LINE L1 5819 6176 -7 615 182 8 0 chr1 230315450 230315571 -12348782 + L1MB7 LINE L1 6053 6174 -10 1739 157 14 0 chr1 230315601 230315894 -12348459 - AluJb SINE Alu -15 297 1 3614 138 35 9 chr1 230316428 230317085 -12347268 - L1MA4A LINE L1 -5 6298 5625 1381 215 132 73 chr1 230317114 230317676 -12346677 - MLT1G LTR MaLR 0 590 1 230 264 0 0 chr1 230318795 230318848 -12345505 + (TATG)n Simple_repeat Simple_repeat 2 54 0 480 252 0 0 chr1 230318877 230319194 -12345159 + (TTGG)n Simple_repeat Simple_repeat 1 317 0 447 250 0 0 chr1 230319208 230319388 -12344965 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 468 236 0 0 chr1 230319492 230319670 -12344683 + (TTGG)n Simple_repeat Simple_repeat 3 180 0 246 253 0 0 chr1 230319683 230319782 -12344571 + (TTGG)n Simple_repeat Simple_repeat 3 101 0 606 202 0 0 chr1 230319800 230319978 -12344375 + (TTGG)n Simple_repeat Simple_repeat 3 180 0 381 261 0 0 chr1 230320020 230320200 -12344153 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 318 267 0 0 chr1 230320237 230320398 -12343955 + (TTGG)n Simple_repeat Simple_repeat 3 163 0 369 261 0 0 chr1 230320412 230320592 -12343761 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 424 221 197 0 chr1 230321544 230321666 -12342687 + MER45C DNA AcHobo 497 642 -311 325 265 189 0 chr1 230321921 230322053 -12342300 + MER103 DNA DNA 3 159 -7 238 236 79 0 chr1 230322231 230322320 -12342033 + L1ME1 LINE L1 5791 5886 -1922 184 333 172 0 chr1 230323738 230323825 -12340528 + L3 LINE CR1 559 660 -917 2393 164 98 49 chr1 230323904 230324999 -12339354 + L1MC2 LINE L1 5154 6337 -7 520 210 6 45 chr1 230325118 230325176 -12339177 + L1ME1 LINE L1 6010 6069 -97 4093 158 42 6 chr1 230325176 230325873 -12338480 + MER72 LTR ERV1 1 722 0 520 210 6 45 chr1 230325873 230325971 -12338382 + L1ME1 LINE L1 6069 6160 -6 1054 288 33 93 chr1 230326583 230326866 -12337487 + L3 LINE CR1 667 965 -612 1754 196 55 133 chr1 230326866 230327655 -12336698 - LTR8A LTR ERV1 0 727 1 1054 288 33 93 chr1 230327655 230328007 -12336346 + L3 LINE CR1 965 1264 -313 207 264 19 0 chr1 230328038 230328091 -12336262 + L3 LINE CR1 1523 1576 -1 1058 111 0 13 chr1 230328397 230328583 -12335770 + AluSg/x SINE Alu 131 314 0 249 354 12 0 chr1 230329067 230329149 -12335204 - MER5A DNA MER1_type -5 184 102 294 335 91 23 chr1 230329469 230329645 -12334708 + MIR SINE MIR 30 217 -45 374 298 21 0 chr1 230330406 230330500 -12333853 - MER5A DNA MER1_type -84 105 10 306 261 29 68 chr1 230330639 230330818 -12333535 + MIR SINE MIR 44 210 -52 1711 158 10 7 chr1 230332100 230332398 -12331955 + AluJb SINE Alu 1 299 -13 207 0 0 0 chr1 230332867 230332890 -12331463 + (TA)n Simple_repeat Simple_repeat 2 24 0 384 219 24 0 chr1 230333627 230333709 -12330644 - L2 LINE L2 -1 3312 3229 817 154 0 0 chr1 230333805 230333928 -12330425 - FLAM_C SINE Alu -19 124 2 209 367 44 0 chr1 230335419 230335509 -12328844 - MIR3 SINE MIR -4 204 111 245 169 62 0 chr1 230336041 230336106 -12328247 + (ATG)n Simple_repeat Simple_repeat 3 71 0 1003 104 0 0 chr1 230336113 230336248 -12328105 + AluSq/x SINE Alu 1 135 -178 1943 153 0 0 chr1 230336248 230336548 -12327805 + AluSx SINE Alu 1 300 -12 181 146 42 0 chr1 230336592 230336640 -12327713 + (ATG)n Simple_repeat Simple_repeat 2 51 0 199 291 12 58 chr1 230337285 230337371 -12326982 + MIR SINE MIR 59 140 -122 2094 109 7 0 chr1 230337387 230337681 -12326672 + AluSp SINE Alu 8 303 -10 2065 106 24 7 chr1 230338995 230339288 -12325065 + AluSx SINE Alu 1 298 -14 22 56 0 0 chr1 230340135 230340171 -12324182 + AT_rich Low_complexity Low_complexity 1 36 0 360 250 0 0 chr1 230340196 230340272 -12324081 + L2 LINE L2 3155 3230 -42 335 353 15 0 chr1 230343086 230343222 -12321131 - MIR SINE MIR -105 157 20 197 313 181 6 chr1 230343981 230344141 -12320212 + MIR SINE MIR 41 228 -34 328 300 96 52 chr1 230344592 230344862 -12319491 - L2 LINE L2 -1 3312 3031 200 345 72 7 chr1 230345612 230345751 -12318602 + MIR SINE MIR 7 154 -108 309 238 127 40 chr1 230345784 230345910 -12318443 - MIR SINE MIR -16 246 110 1968 98 0 28 chr1 230346093 230346380 -12317973 + AluSc SINE Alu 24 302 -7 191 333 93 80 chr1 230346710 230346860 -12317493 - L2 LINE L2 0 3272 3121 321 234 93 37 chr1 230346981 230347088 -12317265 - MER117 DNA MER1_type -26 171 59 198 311 74 0 chr1 230347203 230347325 -12317028 - L2 LINE L2 -309 2963 2833 340 336 20 0 chr1 230347465 230347614 -12316739 - MER112 DNA MER1_type -41 219 68 298 353 17 0 chr1 230347790 230347909 -12316444 - MIR SINE MIR -49 213 93 336 398 31 11 chr1 230349009 230349200 -12315153 + MIR3 SINE MIR 8 202 -6 1268 191 65 123 chr1 230351055 230351356 -12312997 - MLT1B LTR MaLR 0 390 117 1601 174 0 7 chr1 230351356 230351674 -12312679 - AluJb SINE Alu 0 316 1 1268 191 65 123 chr1 230351674 230351785 -12312568 - MLT1B LTR MaLR -273 117 1 205 333 52 37 chr1 230351991 230352126 -12312227 + MIR SINE MIR 31 167 -95 2151 210 62 8 chr1 230352825 230353324 -12311029 + L1MB7 LINE L1 5648 6173 -11 261 0 0 0 chr1 230354098 230354127 -12310226 + (CA)n Simple_repeat Simple_repeat 1 29 0 2381 64 0 0 chr1 230354525 230354822 -12309531 - AluY SINE Alu -14 297 1 198 71 0 0 chr1 230355855 230355883 -12308470 + (TG)n Simple_repeat Simple_repeat 2 29 0 297 290 170 0 chr1 230356250 230356350 -12308003 - MER103 DNA DNA -47 119 3 412 162 8 111 chr1 230358219 230358336 -12306017 - MER5A DNA MER1_type -80 109 5 315 71 0 0 chr1 230359643 230359685 -12304668 + (A)n Simple_repeat Simple_repeat 1 42 0 372 313 95 14 chr1 230361598 230361745 -12302608 + MIR SINE MIR 33 191 -71 202 302 0 16 chr1 230362390 230362453 -12301900 + MIR3 SINE MIR 144 205 -3 242 44 0 67 chr1 230362609 230362654 -12301699 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1692 160 3 3 chr1 230362664 230362946 -12301407 - AluJo SINE Alu -30 282 1 1990 131 3 3 chr1 230364249 230364555 -12299798 + AluSq SINE Alu 1 306 -7 609 251 88 12 chr1 230365202 230365373 -12298980 + MIR SINE MIR 23 206 -56 248 273 13 39 chr1 230369004 230369081 -12295272 + MIR SINE MIR 188 262 0 1639 157 7 25 chr1 230369191 230369520 -12294833 + AluJo SINE Alu 1 324 0 480 200 0 0 chr1 230369993 230370123 -12294230 + (CA)n Simple_repeat Simple_repeat 1 130 0 222 280 47 46 chr1 230371020 230371201 -12293152 + MIR SINE MIR 36 216 -46 1820 113 57 0 chr1 230371668 230371790 -12292563 + AluJb SINE Alu 1 115 -197 216 67 0 0 chr1 230371790 230371820 -12292533 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1820 113 57 0 chr1 230371820 230371979 -12292374 + AluJb SINE Alu 115 298 -14 2502 156 18 28 chr1 230371981 230372416 -12291937 - Tigger2a DNA MER2_type 0 434 4 294 29 0 0 chr1 230372417 230372452 -12291901 + (TG)n Simple_repeat Simple_repeat 2 36 0 38 0 0 0 chr1 230373077 230373115 -12291238 + AT_rich Low_complexity Low_complexity 1 38 0 2231 119 0 0 chr1 230374079 230374391 -12289962 + AluSx SINE Alu 1 312 0 800 119 16 8 chr1 230374399 230374525 -12289828 + AluJ SINE Alu 1 127 -185 2513 55 0 0 chr1 230375128 230375439 -12288914 - AluY SINE Alu 0 311 1 610 227 127 0 chr1 230375847 230375997 -12288356 + AluJ SINE Alu 134 302 -10 803 304 24 8 chr1 230376200 230376450 -12287903 + MIR SINE MIR 1 254 -8 180 77 0 0 chr1 230376456 230376482 -12287871 + (CAT)n Simple_repeat Simple_repeat 1 26 0 218 322 153 52 chr1 230376537 230377034 -12287319 + L2 LINE L2 2035 2581 -733 3726 122 53 34 chr1 230377155 230377778 -12286575 - MER41B LTR ERV1 0 635 1 380 232 0 24 chr1 230378068 230378150 -12286203 - L2 LINE L2 -5 3267 3188 362 252 44 92 chr1 230378285 230378491 -12285862 + MIR SINE MIR 60 255 -7 754 188 156 0 chr1 230379547 230379707 -12284646 + MER5A DNA MER1_type 5 189 0 328 161 16 0 chr1 230379789 230379851 -12284502 + MER5B DNA MER1_type 1 63 -115 2145 104 3 0 chr1 230379852 230380151 -12284202 + AluSx SINE Alu 1 300 -12 2340 255 153 49 chr1 230380244 230380562 -12283791 + L2 LINE L2 1534 1818 -1495 1326 229 3 22 chr1 230380562 230380877 -12283476 - AluJo SINE Alu -3 309 1 2340 255 153 49 chr1 230380877 230381365 -12282988 + L2 LINE L2 1818 2254 -1059 842 135 8 15 chr1 230381365 230381498 -12282855 - FLAM_C SINE Alu -1 132 1 2340 255 153 49 chr1 230381498 230382229 -12282124 + L2 LINE L2 2254 3290 -23 549 249 89 82 chr1 230382283 230382554 -12281799 + L1ME3A LINE L1 5316 5584 -580 2062 157 6 6 chr1 230382554 230382898 -12281455 - MER7A DNA MER2_type 0 346 5 6888 64 12 14 chr1 230382903 230384515 -12279838 - SVA Other Other -683 1386 52 549 249 89 82 chr1 230384515 230384526 -12279827 + L1ME3A LINE L1 5587 5596 -568 294 29 0 0 chr1 230384526 230384561 -12279792 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 549 249 89 82 chr1 230384561 230384718 -12279635 + L1ME3A LINE L1 5596 5767 -397 313 316 29 23 chr1 230384820 230384994 -12279359 + L1ME3A LINE L1 5788 5962 -208 25 83 0 0 chr1 230385217 230385277 -12279076 + AT_rich Low_complexity Low_complexity 1 60 0 2339 123 29 81 chr1 230385659 230386115 -12278238 + MSTB1 LTR MaLR 1 432 0 1914 146 0 3 chr1 230387910 230388212 -12276141 + AluJb SINE Alu 1 301 -11 229 338 0 0 chr1 230388619 230388693 -12275660 + L3 LINE CR1 1496 1569 -8 2091 140 11 25 chr1 230391113 230391471 -12272882 + MER46B DNA MER2_type 8 235 -1 228 185 0 0 chr1 230391604 230391658 -12272695 + (TAGG)n Simple_repeat Simple_repeat 2 55 0 239 104 21 0 chr1 230391658 230391706 -12272647 + (CA)n Simple_repeat Simple_repeat 2 50 0 30 0 0 0 chr1 230391820 230391850 -12272503 + AT_rich Low_complexity Low_complexity 1 30 0 773 324 20 4 chr1 230391878 230392122 -12272231 - MIR SINE MIR -5 257 10 234 274 55 27 chr1 230392606 230392679 -12271674 + L2 LINE L2 3160 3234 -38 1736 169 3 0 chr1 230393978 230394274 -12270079 + AluJb SINE Alu 1 297 -15 2023 139 3 0 chr1 230394275 230394585 -12269768 + AluSx SINE Alu 1 311 -1 1714 196 30 6 chr1 230394657 230394988 -12269365 - MLT1A1 LTR MaLR -2 363 25 1793 122 11 78 chr1 230394988 230395356 -12268997 - MER4A LTR ERV1 0 664 263 683 111 0 10 chr1 230395356 230395455 -12268898 - MER4A LTR ERV1 -566 98 1 503 301 114 18 chr1 230396739 230396958 -12267395 - MIR SINE MIR -11 251 12 1911 155 64 21 chr1 230397128 230397502 -12266851 + MLT1B LTR MaLR 1 390 0 211 296 0 0 chr1 230398954 230398998 -12265355 + L3b LINE CR1 1408 1451 -132 1942 149 3 0 chr1 230399983 230400271 -12264082 - AluJo SINE Alu -23 289 1 610 281 20 7 chr1 230400273 230400426 -12263927 - MIR SINE MIR -84 178 24 235 312 26 13 chr1 230400925 230401002 -12263351 + L3 LINE CR1 221 298 -1279 747 353 76 14 chr1 230401763 230402182 -12262171 + L3 LINE CR1 319 763 -814 670 269 19 6 chr1 230402180 230402336 -12262017 - MIR SINE MIR -81 181 24 * 389 341 130 31 chr1 230402359 230402743 -12261610 + L3 LINE CR1 764 1185 -392 22 0 0 0 chr1 230402924 230402946 -12261407 + AT_rich Low_complexity Low_complexity 1 22 0 1562 156 15 88 chr1 230402954 230403282 -12261071 + AluJo SINE Alu 1 304 -8 370 290 142 33 chr1 230403314 230403497 -12260856 - MIR SINE MIR -35 227 25 814 262 72 0 chr1 230403571 230403792 -12260561 - MIR SINE MIR 0 262 26 1840 164 3 10 chr1 230403960 230404253 -12260100 - AluJo SINE Alu -21 291 1 319 333 36 50 chr1 230404695 230404914 -12259439 - MIR SINE MIR -34 228 13 550 288 84 73 chr1 230405526 230406420 -12257933 + L1MEd LINE L1 322 1225 -4894 230 143 24 0 chr1 230406766 230406808 -12257545 - MLT1K LTR MaLR -37 551 509 471 227 208 7 chr1 230407291 230407445 -12256908 - MER5A DNA MER1_type 0 189 5 1495 161 145 8 chr1 230407540 230407795 -12256558 - AluJb SINE Alu -12 290 1 1014 72 22 22 chr1 230408424 230408563 -12255790 - MER85 DNA T2_type 0 139 1 263 213 13 67 chr1 230408989 230409064 -12255289 - MIR3 SINE MIR -27 181 111 399 286 86 23 chr1 230410497 230410672 -12253681 + MIR3 SINE MIR 21 206 -2 354 348 43 27 chr1 230410752 230410939 -12253414 - L2 LINE L2 -2 3270 3081 5334 160 32 29 chr1 230413033 230413664 -12250689 + L1MA10 LINE L1 5312 5949 -385 1108 168 0 0 chr1 230413664 230413825 -12250528 + FRAM SINE Alu 1 161 -5 5334 160 32 29 chr1 230413825 230414200 -12250153 + L1MA10 LINE L1 5949 6321 -13 250 248 102 32 chr1 230414244 230414401 -12249952 - L2 LINE L2 -169 3144 2977 341 248 338 13 chr1 230414418 230414575 -12249778 - L2 LINE L2 -540 2774 2567 378 256 40 48 chr1 230414612 230414737 -12249616 + MER5A DNA MER1_type 7 130 -59 2477 93 0 0 chr1 230415588 230415899 -12248454 + AluY SINE Alu 1 311 0 271 80 100 0 chr1 230415899 230415949 -12248404 + L1MB2 LINE L1 6115 6169 -2 254 314 23 0 chr1 230416362 230416448 -12247905 - MER5A DNA MER1_type -55 134 47 335 302 224 35 chr1 230416833 230417293 -12247060 - L2 LINE L2 -616 2698 2152 263 105 0 0 chr1 230417310 230417348 -12247005 - 5S rRNA rRNA -76 45 8 6488 79 8 1 chr1 230417348 230418216 -12246137 + L1PA8A LINE L1 5232 6104 -27 359 321 124 12 chr1 230418275 230418685 -12245668 - L2 LINE L2 -1217 2097 1641 250 366 56 7 chr1 230418685 230418827 -12245526 + MIR3 SINE MIR 3 151 -57 1620 274 184 25 chr1 230418936 230420064 -12244289 - HAL1 LINE L1 -2 2505 1181 727 40 10 10 chr1 230420064 230420164 -12244189 + (TTCC)n Simple_repeat Simple_repeat 4 103 0 1620 274 184 25 chr1 230420164 230420212 -12244141 - HAL1 LINE L1 -1326 1181 1142 416 155 0 0 chr1 230420223 230420281 -12244072 - Alu SINE Alu -21 291 234 1016 129 7 14 chr1 230420381 230420528 -12243825 - AluSx SINE Alu -132 180 35 412 155 175 0 chr1 230420553 230420650 -12243703 - HAL1 LINE L1 -1422 1085 972 434 225 76 76 chr1 230420883 230421119 -12243234 + HAL1 LINE L1 1061 1296 -1211 2213 108 0 7 chr1 230421488 230421784 -12242569 - AluSc SINE Alu -15 294 1 2205 113 13 0 chr1 230422257 230422558 -12241795 - AluSq SINE Alu -8 305 1 1616 99 36 18 chr1 230424450 230424673 -12239680 - MER30 DNA MER1_type 0 230 4 26 0 0 0 chr1 230425169 230425195 -12239158 + AT_rich Low_complexity Low_complexity 1 26 0 421 263 22 95 chr1 230425937 230426211 -12238142 + HAL1b LINE L1 281 534 -814 954 202 17 69 chr1 230426224 230426457 -12237896 - MER58A DNA MER1_type -1 223 3 5717 212 68 55 chr1 230427034 230429573 -12234780 + L1MB4 LINE L1 42 2604 -4040 2121 126 13 7 chr1 230429573 230429883 -12234470 - AluSx SINE Alu 0 312 1 5717 212 68 55 chr1 230429883 230430716 -12233637 + L1MB4 LINE L1 2604 3424 -3220 4554 207 37 20 chr1 230430741 230432615 -12231738 + L1MB4 LINE L1 4778 6678 0 192 77 0 0 chr1 230432782 230432808 -12231545 + (TAG)n Simple_repeat Simple_repeat 3 28 0 2412 46 4 0 chr1 230432878 230433205 -12231148 + AluY SINE Alu 1 328 0 466 271 73 79 chr1 230433278 230433541 -12230812 + MER102b DNA MER1_type 41 303 -1125 2170 151 5 50 chr1 230433541 230433918 -12230435 + MLT1A1 LTR MaLR 3 362 -3 466 271 73 79 chr1 230433918 230433957 -12230396 + MER102b DNA MER1_type 303 341 0 240 58 39 19 chr1 230433990 230434042 -12230311 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 698 225 0 0 chr1 230434935 230435055 -12229298 + FLAM_A SINE Alu 1 120 -13 2229 118 0 13 chr1 230435494 230435807 -12228546 - AluSg SINE Alu -1 309 1 2234 93 3 0 chr1 230435832 230436123 -12228230 - AluY SINE Alu -17 294 3 500 208 28 0 chr1 230436173 230436279 -12228074 - MLT1B LTR MaLR -61 329 221 824 124 0 0 chr1 230436280 230436393 -12227960 + FLAM_C SINE Alu 9 121 -22 24 0 0 0 chr1 230436396 230436420 -12227933 + AT_rich Low_complexity Low_complexity 1 24 0 1584 188 0 40 chr1 230436423 230436721 -12227632 + AluJo SINE Alu 5 290 -22 228 185 25 151 chr1 230436734 230436853 -12227500 - MLT1H LTR MaLR -26 523 420 239 158 88 0 chr1 230437129 230437186 -12227167 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1698 212 96 52 chr1 230437195 230437239 -12227114 + MER97b DNA MER1_type? 242 283 -770 2224 96 0 3 chr1 230437239 230437531 -12226822 - AluSx SINE Alu -21 291 1 1698 212 96 52 chr1 230437531 230438029 -12226324 + MER97b DNA MER1_type? 283 808 -245 2264 101 0 0 chr1 230438413 230438711 -12225642 - AluY SINE Alu -13 298 1 2860 147 20 2 chr1 230438932 230439381 -12224972 - MER65C LTR ERV1 -4 457 1 607 266 91 18 chr1 230439602 230439888 -12224465 + MER97c DNA MER1_type? 777 1083 -7 828 248 153 23 chr1 230439964 230440363 -12223990 + L2 LINE L2 2863 3313 0 495 327 62 38 chr1 230440553 230440972 -12223381 + HAL1 LINE L1 628 1056 -1451 746 151 0 0 chr1 230441032 230441138 -12223215 + FLAM_C SINE Alu 2 107 -36 878 120 42 0 chr1 230441206 230441348 -12223005 - MER65C LTR ERV1 -4 457 310 2015 242 45 8 chr1 230441350 230441867 -12222486 + L1ME2 LINE L1 5393 5928 -236 3458 244 63 17 chr1 230441889 230443756 -12220597 + L1MEc LINE L1 1973 3918 -2297 500 143 23 179 chr1 230443768 230444069 -12220284 + AluSx SINE Alu 9 262 -50 1437 227 56 7 chr1 230444112 230444521 -12219832 + L1MEc LINE L1 3900 4328 -1887 510 250 91 23 chr1 230444534 230444710 -12219643 + MLT1J LTR MaLR 29 216 -295 520 193 56 75 chr1 230444741 230444902 -12219451 + MLT1J LTR MaLR 344 501 -10 2220 95 0 41 chr1 230445100 230445416 -12218937 - AluSg SINE Alu -7 303 1 1619 196 107 27 chr1 230445422 230445872 -12218481 - Charlie4a DNA MER1_type -3 505 20 454 288 103 7 chr1 230447390 230447536 -12216817 - MIR SINE MIR -70 192 33 1872 123 0 28 chr1 230448405 230448724 -12215629 - AluSg SINE Alu 0 315 5 1965 184 65 30 chr1 230448824 230449298 -12215055 + L1MD3 LINE L1 7491 7981 -14 21 0 0 0 chr1 230449331 230449352 -12215001 + AT_rich Low_complexity Low_complexity 1 21 0 2018 98 18 98 chr1 230449610 230449938 -12214415 - AluSx SINE Alu -10 302 1 412 358 50 20 chr1 230451211 230451412 -12212941 - L2 LINE L2 -559 2755 2549 252 325 114 0 chr1 230451436 230451559 -12212794 - L2 LINE L2 -899 2415 2279 2475 212 104 8 chr1 230451645 230452250 -12212103 - LTR65 LTR ERV1 -2 667 5 1902 132 17 7 chr1 230452391 230452680 -12211673 + AluSx SINE Alu 1 292 -20 417 96 12 36 chr1 230452680 230452763 -12211590 + (GGGA)n Simple_repeat Simple_repeat 3 83 0 1783 42 14 5 chr1 230453004 230453218 -12211135 + L1PA4 LINE L1 5938 6153 -2 225 0 0 0 chr1 230453245 230453270 -12211083 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 271 21 0 chr1 230453829 230453877 -12210476 - L2 LINE L2 -680 2634 2586 229 175 0 35 chr1 230453921 230453978 -12210375 + L1MD3 LINE L1 3991 4045 -2101 964 233 69 26 chr1 230453986 230454364 -12209989 + L1MD3 LINE L1 4122 4515 -1631 359 123 174 2 chr1 230454364 230454525 -12209828 - MER2 DNA MER2_type 0 345 129 4725 117 35 14 chr1 230454525 230455177 -12209176 - Tigger1 DNA MER2_type -1 2417 1747 2128 110 17 3 chr1 230455177 230455469 -12208884 - AluSx SINE Alu -16 296 1 4725 117 35 14 chr1 230455469 230455541 -12208812 - Tigger1 DNA MER2_type -671 1747 1678 * 6761 114 52 14 chr1 230455526 230456313 -12208040 - Tigger1 DNA MER2_type -1292 1126 285 2288 95 7 0 chr1 230456313 230456609 -12207744 - AluSx SINE Alu -14 298 1 6761 114 52 14 chr1 230456609 230456906 -12207447 - Tigger1 DNA MER2_type -2133 285 1 870 176 0 0 chr1 230456906 230457036 -12207317 - MER2 DNA MER2_type -214 131 2 3819 205 122 21 chr1 230457036 230459034 -12205319 + L1MD3 LINE L1 4513 5396 -750 334 297 40 0 chr1 230459072 230459173 -12205180 + MLT1F1 LTR MaLR 1 105 -462 2531 48 7 0 chr1 230459173 230459467 -12204886 - AluY SINE Alu -11 300 5 2023 208 93 25 chr1 230459469 230460041 -12204312 + L1MD3 LINE L1 7371 7981 -14 21 0 0 0 chr1 230460074 230460095 -12204258 + AT_rich Low_complexity Low_complexity 1 21 0 2027 97 18 97 chr1 230460353 230460682 -12203671 - AluSx SINE Alu -9 303 1 1506 141 129 0 chr1 230461758 230462021 -12202332 + AluSx SINE Alu 1 297 -15 2449 52 0 29 chr1 230462380 230462689 -12201664 - AluY SINE Alu -11 300 1 342 80 0 0 chr1 230462947 230462997 -12201356 - L1PA15 LINE L1 -4 6161 6112 663 217 51 6 chr1 230463740 230463897 -12200456 + MER104 DNA Tc2 4 167 -13 25 31 0 0 chr1 230463930 230463962 -12200391 + AT_rich Low_complexity Low_complexity 1 32 0 983 73 24 0 chr1 230464481 230464605 -12199748 + AluSq/x SINE Alu 1 127 -185 2113 112 0 23 chr1 230464612 230464916 -12199437 + AluSx SINE Alu 1 297 -15 266 316 230 32 chr1 230464931 230465431 -12198922 - L2 LINE L2 -561 2753 2155 1711 107 74 11 chr1 230465462 230465732 -12198621 + L1MA6 LINE L1 6013 6299 -1 507 274 221 14 chr1 230465855 230466305 -12198048 + L2 LINE L2 1723 3313 0 201 230 46 46 chr1 230466450 230466537 -12197816 + MER5A DNA MER1_type 103 189 0 514 224 13 0 chr1 230466870 230467022 -12197331 + G-rich Low_complexity Low_complexity 6 159 0 23 0 0 0 chr1 230468562 230468585 -12195768 + AT_rich Low_complexity Low_complexity 1 23 0 349 308 33 17 chr1 230468958 230469078 -12195275 - MIR SINE MIR -93 169 48 2081 89 4 4 chr1 230469401 230469722 -12194631 + AluY SINE Alu 1 321 0 328 333 60 38 chr1 230469827 230470010 -12194343 + MIR SINE MIR 1 187 -75 867 148 39 87 chr1 230471294 230471330 -12193023 - Charlie5 DNA MER1_type -5 2580 2544 1697 164 73 0 chr1 230471330 230471617 -12192736 - AluJo SINE Alu -4 308 1 867 148 39 87 chr1 230471617 230471810 -12192543 - Charlie5 DNA MER1_type -41 2544 2362 327 130 0 0 chr1 230471837 230471891 -12192462 + (GA)n Simple_repeat Simple_repeat 1 54 0 279 333 79 0 chr1 230472131 230472245 -12192108 + MIR SINE MIR 25 147 -115 1302 152 94 0 chr1 230472644 230472868 -12191485 + L1MA3 LINE L1 6061 6305 0 228 264 0 0 chr1 230472887 230472899 -12191454 + MER3 DNA MER1_type 38 49 -160 917 190 60 0 chr1 230472899 230473083 -12191270 - MER3 DNA MER1_type -2 207 13 2214 114 3 0 chr1 230473232 230473529 -12190824 - AluSx SINE Alu -14 298 1 620 321 71 75 chr1 230474069 230474720 -12189633 - L2 LINE L2 -25 3247 2601 387 304 0 20 chr1 230477143 230477245 -12187108 + MIR SINE MIR 50 149 -113 5453 26 2 2 chr1 230477611 230478214 -12186139 + L1PA3 LINE L1 5550 6152 -3 208 311 229 18 chr1 230479840 230480277 -12184076 + L2 LINE L2 1180 1708 -1606 1828 143 3 35 chr1 230480739 230481053 -12183300 - AluJb SINE Alu -8 304 1 348 350 51 60 chr1 230481455 230481786 -12182567 + L2 LINE L2 2948 3275 -38 2346 94 0 13 chr1 230481848 230482155 -12182198 - AluSx SINE Alu -9 303 1 570 116 23 0 chr1 230485290 230485376 -12178977 + MER21A LTR ERV1 1 88 -843 2250 175 57 9 chr1 230485384 230485509 -12178844 - L1MC3 LINE L1 -612 7173 7055 2270 99 7 0 chr1 230485509 230485801 -12178552 - AluSx SINE Alu -16 296 3 2250 175 57 9 chr1 230485801 230486132 -12178221 - L1MC3 LINE L1 -730 7055 6695 4964 109 18 12 chr1 230486414 230487100 -12177253 + LTR8 LTR ERV1 1 690 -1 229 184 82 0 chr1 230487656 230487705 -12176648 - HsTC2 DNA Tc2 -608 1290 1238 310 279 33 41 chr1 230487709 230487831 -12176522 - HsTC2 DNA Tc2 -1774 124 4 26 0 0 0 chr1 230488326 230488352 -12176001 + AT_rich Low_complexity Low_complexity 1 26 0 1911 147 13 3 chr1 230488959 230489258 -12175095 + AluSx SINE Alu 1 302 -10 1302 208 104 25 chr1 230489261 230489579 -12174774 - MER2 DNA MER2_type 0 344 2 185 302 0 0 chr1 230490096 230490149 -12174204 - L2 LINE L2 0 3272 3220 2203 108 0 3 chr1 230490308 230490604 -12173749 + AluSg SINE Alu 1 295 -15 1023 183 84 15 chr1 230490633 230490835 -12173518 + AluJo SINE Alu 83 298 -14 262 392 34 7 chr1 230490835 230490983 -12173370 - L2 LINE L2 -244 3028 2877 315 27 0 0 chr1 230491412 230491449 -12172904 + AluSq SINE Alu 18 54 -249 1506 102 0 19 chr1 230491449 230491655 -12172698 + AluSq SINE Alu 97 298 -15 475 349 142 18 chr1 230491679 230492223 -12172130 - L2 LINE L2 -400 2914 2304 828 213 139 30 chr1 230492247 230492449 -12171904 - MER58A DNA MER1_type 0 224 1 200 352 111 63 chr1 230492450 230492868 -12171485 - L2 LINE L2 -1037 2277 1880 2345 80 3 0 chr1 230492868 230493156 -12171197 + AluSx SINE Alu 1 289 -23 200 352 111 63 chr1 230493156 230493623 -12170730 - L2 LINE L2 -1434 1880 1350 262 289 83 51 chr1 230493624 230493780 -12170573 + LTR67 LTR ERVL 2 162 -395 1964 133 7 3 chr1 230494476 230494762 -12169591 - AluSx SINE Alu -25 287 1 23 0 0 0 chr1 230496216 230496239 -12168114 + AT_rich Low_complexity Low_complexity 1 23 0 349 308 33 17 chr1 230496612 230496732 -12167621 - MIR SINE MIR -93 169 48 2332 57 0 3 chr1 230497056 230497378 -12166975 + AluY SINE Alu 1 321 0 444 335 30 30 chr1 230497498 230497665 -12166688 + MIR SINE MIR 22 188 -74 289 217 91 97 chr1 230497884 230498059 -12166294 - HAL1 LINE L1 -27 2480 2307 26 0 0 0 chr1 230499181 230499207 -12165146 + AT_rich Low_complexity Low_complexity 1 26 0 2379 94 0 0 chr1 230499246 230499554 -12164799 - AluSx SINE Alu -4 308 1 3434 86 22 10 chr1 230500544 230501053 -12163300 + L1MA3 LINE L1 5789 6303 -2 985 181 39 0 chr1 230501104 230501286 -12163067 - MER5A DNA MER1_type 0 189 1 556 221 23 30 chr1 230501310 230501441 -12162912 - L1M4 LINE L1 -595 5583 5454 605 288 183 7 chr1 230501479 230501899 -12162454 + L2 LINE L2 1612 2105 -1209 879 131 0 29 chr1 230501918 230502055 -12162298 - FLAM_C SINE Alu 0 133 1 186 345 43 26 chr1 230502091 230502207 -12162146 + L2 LINE L2 2940 3057 -215 2106 124 0 34 chr1 230502809 230502945 -12161408 + AluSx SINE Alu 1 140 -172 2376 84 3 0 chr1 230502945 230503241 -12161112 + AluSp SINE Alu 1 297 -16 2106 124 0 34 chr1 230503241 230503426 -12160927 + AluSx SINE Alu 140 311 -1 844 148 0 15 chr1 230503552 230503687 -12160666 - FLAM_C SINE Alu 0 133 1 379 189 0 11 chr1 230504950 230505040 -12159313 + L1MA10 LINE L1 6246 6334 0 24 0 0 0 chr1 230506110 230506134 -12158219 + AT_rich Low_complexity Low_complexity 1 24 0 391 231 109 81 chr1 230506608 230506716 -12157637 - Charlie8 DNA MER1_type -113 228 124 2305 92 0 0 chr1 230506716 230507011 -12157342 - AluSx SINE Alu -17 295 1 391 231 109 81 chr1 230507011 230507123 -12157230 - Charlie8 DNA MER1_type -217 124 2 787 231 80 20 chr1 230508958 230509157 -12155196 + MIR SINE MIR 7 217 -45 748 240 116 4 chr1 230509767 230510000 -12154353 - MIR SINE MIR -3 259 1 2212 94 14 0 chr1 230510021 230510318 -12154035 + AluSq SINE Alu 1 301 -12 1946 144 7 0 chr1 230510325 230510610 -12153743 + AluSx SINE Alu 1 287 -25 2014 106 4 4 chr1 230511142 230511416 -12152937 + AluSg SINE Alu 20 293 -17 228 313 73 78 chr1 230511865 230512057 -12152296 + L2 LINE L2 3032 3222 -50 227 289 0 0 chr1 230512227 230512279 -12152074 + MIR SINE MIR 62 113 -149 189 277 46 15 chr1 230512387 230512452 -12151901 + MIR SINE MIR 126 192 -70 287 273 15 0 chr1 230512531 230512597 -12151756 - L2 LINE L2 -8 3264 3198 710 356 85 26 chr1 230512632 230513245 -12151108 - L2 LINE L2 -825 2489 1841 1692 100 10 116 chr1 230513333 230513634 -12150719 + AluSx SINE Alu 1 269 -43 30 0 0 0 chr1 230513637 230513667 -12150686 + AT_rich Low_complexity Low_complexity 1 30 0 510 206 211 1 chr1 230513943 230514121 -12150232 - MER63 DNA MER1_type 0 1688 1 21 0 0 0 chr1 230514539 230514560 -12149793 + AT_rich Low_complexity Low_complexity 1 21 0 265 273 162 0 chr1 230515206 230515305 -12149048 - MIR SINE MIR -128 134 20 319 287 28 19 chr1 230515759 230515867 -12148486 + L1ME LINE L1 374 482 -5914 3157 233 98 20 chr1 230516219 230517709 -12146644 + L1ME LINE L1 782 2346 -4060 2052 121 0 0 chr1 230517709 230517974 -12146379 + AluSq SINE Alu 1 265 -48 1696 221 101 50 chr1 230517974 230518760 -12145593 + L1ME LINE L1 2800 3625 -2781 * 2644 211 70 62 chr1 230518759 230519067 -12145286 + L1MB3 LINE L1 4197 4501 -1645 1941 167 0 0 chr1 230519067 230519361 -12144992 + AluSx SINE Alu 1 294 -18 2644 211 70 62 chr1 230519361 230519709 -12144644 + L1MB3 LINE L1 4501 4845 -1301 1738 168 62 17 chr1 230519709 230520126 -12144227 - L1MB8 LINE L1 -12 6166 5731 2644 211 70 62 chr1 230520126 230520518 -12143835 + L1MB3 LINE L1 4845 5255 -891 23 0 0 0 chr1 230520599 230520622 -12143731 + AT_rich Low_complexity Low_complexity 1 23 0 2361 97 3 0 chr1 230521174 230521474 -12142879 + AluSp SINE Alu 1 301 -12 3633 154 42 15 chr1 230521572 230522291 -12142062 + L1MB3 LINE L1 5426 6163 -20 2065 263 186 10 chr1 230522658 230523577 -12140776 + L2 LINE L2 1176 2262 -1052 989 168 0 32 chr1 230523577 230523797 -12140556 + L1MA10 LINE L1 6121 6333 -1 26 0 0 0 chr1 230524202 230524228 -12140125 + AT_rich Low_complexity Low_complexity 1 26 0 263 195 276 0 chr1 230524706 230524793 -12139560 + L2 LINE L2 3188 3298 -15 52 41 0 0 chr1 230524796 230524869 -12139484 + AT_rich Low_complexity Low_complexity 1 73 0 1332 149 9 5 chr1 230525560 230525775 -12138578 - AluJo SINE Alu -12 300 85 2020 140 3 0 chr1 230526118 230526404 -12137949 - AluSx SINE Alu -25 287 1 650 320 71 75 chr1 230526944 230527595 -12136758 - L2 LINE L2 -25 3247 2601 285 165 0 66 chr1 230528908 230528999 -12135354 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 2721 0 0 7 chr1 230529631 230529932 -12134421 + AluYa5 SINE Alu 1 299 -12 4901 159 57 14 chr1 230530428 230531488 -12132865 + L1MC2 LINE L1 5179 6282 -62 28 48 0 0 chr1 230531495 230531537 -12132816 + AT_rich Low_complexity Low_complexity 1 42 0 837 122 0 0 chr1 230531539 230531654 -12132699 - FLAM_C SINE Alu -17 116 2 370 143 29 0 chr1 230531655 230531725 -12132628 + L1MC2 LINE L1 6264 6335 -9 283 288 0 0 chr1 230531735 230531815 -12132538 - MER116 DNA Mariner 0 80 1 360 360 9 0 chr1 230531963 230532077 -12132276 + L2 LINE L2 3156 3270 -2 563 205 58 49 chr1 230532503 230532727 -12131626 + L1MC5 LINE L1 7660 7885 -76 301 280 0 0 chr1 230532801 230532894 -12131459 + L1MC4a LINE L1 5381 5473 -2335 1671 191 71 47 chr1 230532950 230533416 -12130937 + MLT1D LTR MaLR 24 500 -5 632 237 126 5 chr1 230533416 230533631 -12130722 + L1MC4a LINE L1 5566 5806 -2002 939 241 126 90 chr1 230533930 230534379 -12129974 + L1ME4a LINE L1 5213 5645 -476 1938 106 0 0 chr1 230534379 230534633 -12129720 - AluSx SINE Alu -25 287 34 939 241 126 90 chr1 230534633 230535025 -12129328 + L1ME4a LINE L1 5645 6087 -34 2317 102 0 0 chr1 230536227 230536521 -12127832 + AluSq SINE Alu 1 294 -19 353 200 0 53 chr1 230536708 230536803 -12127550 + MER58B DNA MER1_type 252 341 0 1786 153 24 107 chr1 230536885 230537344 -12127009 - MER68 LTR ERV1 -141 421 1 2163 126 0 0 chr1 230537695 230537989 -12126364 + AluSx SINE Alu 1 294 -18 3767 188 43 1 chr1 230538593 230539365 -12124988 + L1MB7 LINE L1 5371 6174 -10 2211 114 3 10 chr1 230539465 230539772 -12124581 - AluSx SINE Alu -7 305 1 186 277 43 0 chr1 230540355 230540402 -12123951 - L2 LINE L2 -3 3269 3221 2452 86 0 0 chr1 230540574 230540875 -12123478 + AluSc SINE Alu 1 301 -8 2174 132 7 0 chr1 230541285 230541589 -12122764 - AluSx SINE Alu -6 306 1 23 0 0 0 chr1 230542413 230542436 -12121917 + AT_rich Low_complexity Low_complexity 1 23 0 329 294 12 0 chr1 230543132 230543217 -12121136 + L1MC4a LINE L1 6513 6598 -1210 426 39 0 0 chr1 230543217 230543269 -12121084 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 487 257 0 14 chr1 230543327 230543475 -12120878 + L1MC4 LINE L1 7897 8042 0 23 33 0 0 chr1 230543865 230543895 -12120458 + AT_rich Low_complexity Low_complexity 1 30 0 2037 141 0 0 chr1 230544400 230544690 -12119663 + AluSx SINE Alu 6 295 -17 2116 115 3 34 chr1 230544746 230545068 -12119285 + AluSx SINE Alu 1 312 0 1601 182 10 33 chr1 230545935 230546242 -12118111 - AluJo SINE Alu -10 302 3 1860 132 0 48 chr1 230546336 230546647 -12117706 + AluSx SINE Alu 1 296 -16 419 299 221 17 chr1 230546745 230547058 -12117295 + L2 LINE L2 2645 3011 -302 360 102 0 194 chr1 230547193 230547291 -12117062 + MADE1 DNA Mariner 2 80 0 2215 110 0 13 chr1 230548150 230548451 -12115902 + AluSx SINE Alu 1 297 -15 603 250 57 52 chr1 230548501 230548713 -12115640 + L1MC5 LINE L1 7701 7913 -48 2333 101 3 0 chr1 230548783 230549081 -12115272 - AluSx SINE Alu -13 299 1 363 224 48 24 chr1 230549187 230549312 -12115041 + L1ME4a LINE L1 5993 6120 -1 21 0 0 0 chr1 230549321 230549342 -12115011 + AT_rich Low_complexity Low_complexity 1 21 0 797 194 5 109 chr1 230550146 230550220 -12114133 + MER5A DNA MER1_type 4 84 -105 2201 86 26 0 chr1 230550220 230550523 -12113830 + AluSx SINE Alu 1 311 -1 797 194 5 109 chr1 230550523 230550649 -12113704 + MER5A DNA MER1_type 84 183 -6 3320 249 185 22 chr1 230551174 230552124 -12112229 + HAL1 LINE L1 1 795 -1712 1580 180 6 19 chr1 230552124 230552411 -12111942 + AluJo SINE Alu 1 285 -27 387 0 0 0 chr1 230552411 230552454 -12111899 + (CA)n Simple_repeat Simple_repeat 2 44 0 1580 180 6 19 chr1 230552454 230552477 -12111876 + AluJo SINE Alu 285 307 -5 3320 249 185 22 chr1 230552477 230552952 -12111401 + HAL1 LINE L1 795 1658 -849 794 253 144 104 chr1 230552947 230554183 -12110170 + L1MCc LINE L1 13 1297 -5126 * 416 237 81 37 chr1 230554192 230554435 -12109918 + L1MCc LINE L1 1348 1614 -4897 * 980 279 155 8 chr1 230554427 230554910 -12109443 + HAL1 LINE L1 1636 2189 -318 2022 97 4 0 chr1 230555069 230555348 -12109005 + AluSp SINE Alu 1 280 -33 207 0 0 0 chr1 230555349 230555372 -12108981 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 34 55 0 0 chr1 230556486 230556541 -12107812 + GC_rich Low_complexity Low_complexity 1 55 0 282 350 8 8 chr1 230557620 230557737 -12106616 - MER5A DNA MER1_type -19 170 54 2158 106 56 56 chr1 230557783 230558160 -12106193 - MER51B LTR ERV1 0 377 1 3135 208 53 36 chr1 230558771 230559593 -12104760 + L1ME2 LINE L1 5320 6155 -9 2219 91 0 3 chr1 230559594 230559892 -12104461 + AluSc SINE Alu 1 297 -12 261 0 0 0 chr1 230559926 230559955 -12104398 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 632 299 40 84 chr1 230560243 230560949 -12103404 + L2 LINE L2 1971 2645 -669 183 321 37 25 chr1 230560981 230561062 -12103291 + L2 LINE L2 2987 3068 -204 249 297 41 126 chr1 230561243 230561633 -12102720 + L2 LINE L2 2896 3252 -20 2106 102 0 3 chr1 230561635 230561930 -12102423 - AluSx SINE Alu -18 294 1 2139 109 20 0 chr1 230562053 230562346 -12102007 - AluSx SINE Alu -13 299 1 504 294 40 40 chr1 230562372 230562573 -12101780 - MIR SINE MIR 0 262 62 273 180 0 49 chr1 230562670 230562731 -12101622 + L2 LINE L2 3215 3272 0 2258 92 3 3 chr1 230562782 230563086 -12101267 + AluSx SINE Alu 1 304 -8 977 171 1 12 chr1 230563615 230563800 -12100553 + MER1B DNA MER1_type 1 151 -146 558 38 0 51 chr1 230563802 230563881 -12100472 + MER1B DNA MER1_type 259 333 0 2201 87 0 0 chr1 230563959 230564245 -12100108 + AluSq SINE Alu 3 288 -25 219 36 0 0 chr1 230564248 230564276 -12100077 + (CAAAT)n Simple_repeat Simple_repeat 2 29 0 1670 151 27 10 chr1 230564712 230565004 -12099349 + AluJo SINE Alu 1 297 -15 621 258 103 114 chr1 230565621 230566161 -12098192 + MLT1L LTR MaLR 1 478 -33 225 272 44 66 chr1 230566380 230566516 -12097837 - MER5A DNA MER1_type -30 159 27 363 262 7 38 chr1 230566381 230566498 -12097855 + MER5B DNA MER1_type 43 145 -33 1427 206 21 34 chr1 230567961 230568286 -12096067 + MLT2D LTR ERVL 89 409 -5 2156 93 0 47 chr1 230568406 230568754 -12095599 - AluSp SINE Alu 0 313 1 700 78 0 0 chr1 230568777 230568867 -12095486 - AluSg/x SINE Alu -26 284 195 297 0 0 0 chr1 230569358 230569391 -12094962 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chr1 230569390 230569415 -12094938 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 216 0 0 0 chr1 230569908 230569932 -12094421 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2202 86 4 0 chr1 230569935 230570215 -12094138 - AluSp SINE Alu -32 281 1 204 220 308 33 chr1 230570384 230570475 -12093878 - L2 LINE L2 -8 3264 3149 1945 185 11 8 chr1 230570476 230570838 -12093515 - MLT1A1 LTR MaLR 0 365 3 1904 138 13 13 chr1 230570871 230571175 -12093178 - AluSx SINE Alu -8 304 1 3754 106 43 0 chr1 230571293 230571824 -12092529 + MER41A LTR ERV1 1 554 0 2666 157 86 0 chr1 230572230 230572720 -12091633 - L1MB3 LINE L1 -12 6171 5640 239 222 0 0 chr1 230572974 230573028 -12091325 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 290 374 79 13 chr1 230573044 230573271 -12091082 - L2 LINE L2 -577 2737 2496 630 154 15 15 chr1 230574005 230574141 -12090212 + CT-rich Low_complexity Low_complexity 4 139 0 2178 112 0 6 chr1 230574147 230574461 -12089892 - AluSx SINE Alu 0 312 1 1317 149 80 12 chr1 230574620 230574869 -12089484 - AluJb SINE Alu -8 304 39 294 227 47 39 chr1 230575040 230575168 -12089185 - L1MC4 LINE L1 0 8042 7914 322 145 16 32 chr1 230575288 230575350 -12089003 + LTR7 LTR ERV1 390 450 0 354 247 11 11 chr1 230575352 230575445 -12088908 - L1MC4 LINE L1 -192 7850 7758 1004 169 193 63 chr1 230575447 230575779 -12088574 - LTR37A LTR ERV1 -2 424 50 927 239 30 0 chr1 230575797 230575998 -12088355 - MER58A DNA MER1_type -14 210 4 330 80 0 20 chr1 230575998 230576048 -12088305 - LTR37A LTR ERV1 -377 49 1 1183 182 61 28 chr1 230576066 230576247 -12088106 + MLT1B LTR MaLR 1 175 -292 843 158 0 8 chr1 230576247 230576380 -12087973 + FLAM_A SINE Alu 2 133 0 1183 182 61 28 chr1 230576380 230576575 -12087778 + MLT1B LTR MaLR 175 401 -66 387 232 58 36 chr1 230576738 230576876 -12087477 - MER103 DNA DNA -9 157 17 494 302 26 55 chr1 230578481 230578729 -12085624 - MIR SINE MIR -8 254 14 345 324 0 20 chr1 230578737 230578839 -12085514 - L3 LINE CR1 -1 1576 1477 202 290 75 0 chr1 230579237 230579330 -12085023 - MIR SINE MIR -60 148 49 2030 87 0 0 chr1 230579490 230579756 -12084597 + AluSc SINE Alu 1 266 -43 186 71 0 0 chr1 230579757 230579785 -12084568 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 324 0 0 0 chr1 230580382 230580418 -12083935 + (CA)n Simple_repeat Simple_repeat 2 37 0 2076 118 0 31 chr1 230580607 230580928 -12083425 + AluSx SINE Alu 1 311 -1 2678 88 14 8 chr1 230582415 230582777 -12081576 + THE1B LTR MaLR 1 364 0 1664 155 8 41 chr1 230582778 230583133 -12081220 - MER4A LTR ERV1 0 664 263 446 169 90 0 chr1 230583135 230583224 -12081129 - MER4A LTR ERV1 -566 98 2 256 267 75 50 chr1 230583246 230583366 -12080987 + MIR SINE MIR 20 142 -66 2070 197 40 16 chr1 230583387 230583839 -12080514 + MLT1C LTR MaLR 5 467 0 197 308 66 99 chr1 230583851 230584062 -12080291 + MIR SINE MIR 13 216 -46 712 113 0 9 chr1 230584342 230584409 -12079944 + L1PB1 LINE L1 6038 6104 -47 2118 96 3 3 chr1 230584409 230584702 -12079651 + AluSc SINE Alu 1 293 -16 180 0 0 0 chr1 230584708 230584728 -12079625 + (CAA)n Simple_repeat Simple_repeat 2 21 0 712 113 0 9 chr1 230584728 230584768 -12079585 + L1PB1 LINE L1 6109 6151 0 195 266 31 47 chr1 230584790 230584854 -12079499 - L2 LINE L2 -2850 464 402 904 125 14 0 chr1 230585002 230585146 -12079207 - AluSg/x SINE Alu -11 299 154 1195 80 61 0 chr1 230585653 230585816 -12078537 + MER30 DNA MER1_type 2 174 -56 189 241 0 0 chr1 230586360 230586414 -12077939 + CT-rich Low_complexity Low_complexity 3 56 0 284 347 10 0 chr1 230586478 230586576 -12077777 + L3 LINE CR1 1478 1576 -1 200 229 21 0 chr1 230586695 230586743 -12077610 - L3 LINE CR1 -1 1576 1528 2276 77 3 0 chr1 230586750 230587047 -12077306 - AluSc SINE Alu -11 298 1 551 223 81 20 chr1 230587067 230587215 -12077138 + MIR SINE MIR 49 205 -57 2375 74 3 0 chr1 230587366 230587677 -12076676 + AluSp SINE Alu 1 312 -1 1426 95 0 58 chr1 230588535 230588697 -12075656 - L1MA4 LINE L1 -57 6243 6098 2093 100 0 0 chr1 230588697 230589036 -12075317 - AluSg SINE Alu 0 310 1 1426 95 0 58 chr1 230589036 230589116 -12075237 - L1MA4 LINE L1 -202 6098 6015 2053 117 0 0 chr1 230589131 230589446 -12074907 - AluSx SINE Alu 0 315 1 2005 113 0 7 chr1 230589471 230589755 -12074598 + AluSq SINE Alu 1 282 -31 3530 144 21 63 chr1 230589763 230589895 -12074458 - L1MA4 LINE L1 -176 6124 5988 1961 117 0 0 chr1 230589895 230590202 -12074151 - AluSx SINE Alu 0 307 1 3530 144 21 63 chr1 230590202 230590783 -12073570 - L1MA4 LINE L1 -312 5988 5440 2172 103 0 13 chr1 230591392 230591693 -12072660 + AluSx SINE Alu 1 297 -15 2479 38 3 29 chr1 230591728 230592044 -12072309 + AluY SINE Alu 1 308 -3 544 279 15 0 chr1 230592793 230592929 -12071424 - MIR3 SINE MIR -7 201 64 2061 95 0 3 chr1 230592963 230593273 -12071080 - AluSx SINE Alu 0 309 1 35 83 0 0 chr1 230594398 230594482 -12069871 + AT_rich Low_complexity Low_complexity 1 84 0 1968 147 0 0 chr1 230594590 230594902 -12069451 - AluSx SINE Alu 0 312 1 321 156 10 135 chr1 230594936 230594971 -12069382 - L1MA9 LINE L1 -33 6279 6241 2182 85 10 3 chr1 230594971 230595265 -12069088 - AluSg SINE Alu -13 297 2 321 156 10 135 chr1 230595265 230595325 -12069028 - L1MA9 LINE L1 -71 6241 6196 326 315 165 8 chr1 230596006 230596133 -12068220 + L2 LINE L2 3126 3272 0 2224 95 13 0 chr1 230596240 230596545 -12067808 + AluSc SINE Alu 1 309 0 487 325 19 7 chr1 230596732 230596886 -12067467 + L2 LINE L2 3154 3309 -4 1175 180 23 0 chr1 230597769 230597986 -12066367 + MER50 LTR ERV1 1 222 -512 * 1441 175 0 86 chr1 230597973 230598072 -12066281 + MER50 LTR ERV1 447 553 -181 1889 111 28 0 chr1 230598072 230598361 -12065992 - AluSx SINE Alu -15 297 1 1441 175 0 86 chr1 230598361 230598576 -12065777 + MER50 LTR ERV1 553 734 0 195 316 0 0 chr1 230598656 230598795 -12065558 + (TG)n Simple_repeat Simple_repeat 1 139 0 718 263 104 3 chr1 230599428 230599671 -12064682 - MIR SINE MIR -3 259 7 248 311 56 0 chr1 230600210 230600300 -12064053 + MIR SINE MIR 41 135 -73 2211 110 3 0 chr1 230600321 230600631 -12063722 - AluSx SINE Alu -1 311 1 189 0 0 0 chr1 230602088 230602109 -12062244 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 378 0 0 0 chr1 230602108 230602150 -12062203 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 405 0 0 0 chr1 230602149 230602194 -12062159 + (GA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr1 230602898 230602919 -12061434 + AT_rich Low_complexity Low_complexity 1 21 0 222 278 0 0 chr1 230603284 230603338 -12061015 - MIR SINE MIR -123 139 86 236 298 58 0 chr1 230604043 230604147 -12060206 - L1ME4a LINE L1 -3 6118 6009 2018 107 14 0 chr1 230604256 230604546 -12059807 - AluSx SINE Alu -18 294 1 2171 153 184 63 chr1 230607229 230607798 -12056555 + MLT1E1 LTR MaLR 3 640 -14 204 172 0 172 chr1 230608271 230608335 -12056018 + MIR SINE MIR 206 258 -4 1402 189 26 42 chr1 230608391 230608697 -12055656 + AluJo SINE Alu 3 303 -9 33 0 0 0 chr1 230608697 230608730 -12055623 + AT_rich Low_complexity Low_complexity 1 33 0 331 327 90 19 chr1 230609164 230609320 -12055033 + MIR SINE MIR 96 262 0 205 301 14 51 chr1 230610575 230610730 -12053623 - MIR SINE MIR -34 228 84 267 364 56 10 chr1 230611001 230611196 -12053157 + L2 LINE L2 2450 2653 -661 380 294 70 11 chr1 230611495 230611682 -12052671 + L2 LINE L2 2878 3075 -197 204 40 0 0 chr1 230611841 230611866 -12052487 + (TC)n Simple_repeat Simple_repeat 2 26 0 271 256 105 38 chr1 230612281 230612414 -12051939 + L2 LINE L2 3164 3305 -8 219 317 30 79 chr1 230612903 230613004 -12051349 + MIR SINE MIR 20 115 -147 304 274 48 27 chr1 230613009 230613155 -12051198 + L2 LINE L2 1823 1971 -1343 831 142 0 8 chr1 230613171 230613298 -12051055 - FLAM_C SINE Alu -16 127 2 361 289 188 7 chr1 230613428 230613577 -12050776 - MIR SINE MIR -6 256 81 631 304 96 15 chr1 230613607 230613939 -12050414 + L2 LINE L2 2069 2427 -887 406 329 174 26 chr1 230614182 230614492 -12049861 + L2 LINE L2 2917 3272 0 561 250 21 7 chr1 230616475 230616615 -12047738 - MIR3 SINE MIR -2 206 65 364 340 39 54 chr1 230617101 230617433 -12046920 - LTR16C LTR ERVL -49 442 116 478 234 214 14 chr1 230618712 230618857 -12045496 + MIR SINE MIR 47 220 -42 518 95 48 0 chr1 230619270 230619354 -12044999 + AluS SINE Alu 2 89 -224 52 41 0 0 chr1 230619524 230619597 -12044756 + AT_rich Low_complexity Low_complexity 1 73 0 277 184 276 0 chr1 230619600 230619687 -12044666 - L2 LINE L2 -15 3298 3188 26 0 0 0 chr1 230620165 230620191 -12044162 + AT_rich Low_complexity Low_complexity 1 26 0 1041 171 0 31 chr1 230620596 230620818 -12043535 - L1MA10 LINE L1 -1 6333 6119 2171 259 192 13 chr1 230620819 230621735 -12042618 - L2 LINE L2 -1059 2255 1176 3846 158 43 17 chr1 230622102 230622823 -12041530 - L1MB3 LINE L1 -20 6163 5424 2265 80 3 7 chr1 230622919 230623219 -12041134 - AluSq SINE Alu -12 301 3 1653 170 67 3 chr1 230623219 230623549 -12040804 - L1MC3 LINE L1 -740 7045 6695 4742 109 18 12 chr1 230623831 230624517 -12039836 + LTR8 LTR ERV1 1 690 -1 225 219 0 0 chr1 230625010 230625083 -12039270 + GA-rich Low_complexity Low_complexity 1 73 0 199 315 37 46 chr1 230625317 230625425 -12038928 - MIR SINE MIR -42 220 114 189 0 0 0 chr1 230627363 230627384 -12036969 + (CTG)n Simple_repeat Simple_repeat 2 22 0 243 0 0 0 chr1 230629132 230629159 -12035194 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 224 363 89 0 chr1 230629760 230629895 -12034458 + MIR SINE MIR 89 235 -27 441 315 25 6 chr1 230630880 230631042 -12033311 + MIR SINE MIR 24 188 -74 262 250 164 35 chr1 230633301 230633417 -12030936 + L2 LINE L2 3180 3310 -3 328 254 131 16 chr1 230633891 230634013 -12030340 + MIR SINE MIR 115 250 -12 224 295 84 21 chr1 230634073 230634168 -12030185 + MIR SINE MIR 91 191 -71 1774 181 50 64 chr1 230634407 230634827 -12029526 + MLT2D LTR ERVL 1 414 0 412 209 47 0 chr1 230634921 230635050 -12029303 + MER74A LTR ERVL 297 431 -127 318 230 0 35 chr1 230635706 230635793 -12028560 - MIR3 SINE MIR 0 208 125 214 119 0 68 chr1 230637149 230637208 -12027145 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 243 0 0 0 chr1 230637627 230637654 -12026699 + (TG)n Simple_repeat Simple_repeat 1 27 0 834 148 39 87 chr1 230638983 230639019 -12025334 - Charlie5 DNA MER1_type -5 2580 2544 1594 164 73 0 chr1 230639019 230639306 -12025047 - AluJo SINE Alu -4 308 1 834 148 39 87 chr1 230639306 230639499 -12024854 - Charlie5 DNA MER1_type -41 2544 2362 348 197 0 0 chr1 230639526 230639648 -12024705 + GA-rich Low_complexity Low_complexity 1 122 0 313 296 126 55 chr1 230639799 230639998 -12024355 + MIR SINE MIR 25 237 -25 1229 152 94 0 chr1 230640312 230640536 -12023817 + L1MA3 LINE L1 6061 6305 0 234 264 0 0 chr1 230640555 230640567 -12023786 + MER3 DNA MER1_type 38 49 -160 900 190 60 0 chr1 230640567 230640751 -12023602 - MER3 DNA MER1_type -2 207 13 731 241 53 87 chr1 230640814 230640900 -12023453 + MIR SINE MIR 2 89 -173 2091 110 3 7 chr1 230640900 230641199 -12023154 - AluSx SINE Alu -14 298 1 731 241 53 87 chr1 230641199 230641378 -12022975 + MIR SINE MIR 89 258 -4 221 306 0 16 chr1 230641467 230641529 -12022824 - L2 LINE L2 -225 3047 2987 265 372 56 56 chr1 230641531 230641666 -12022687 - L2 LINE L2 0 3272 3135 2313 165 47 24 chr1 230641666 230642090 -12022263 + Tigger2a DNA MER2_type 1 434 0 265 372 56 56 chr1 230642090 230642220 -12022133 - L2 LINE L2 -136 3136 3007 2231 81 7 3 chr1 230642497 230642795 -12021558 + AluSx SINE Alu 2 300 -12 283 253 11 32 chr1 230643502 230643597 -12020756 - MER81 DNA DNA -2 112 20 2116 101 0 3 chr1 230644054 230644351 -12020002 - AluSx SINE Alu -16 296 1 1771 154 0 7 chr1 230644360 230644652 -12019701 - AluJo SINE Alu -22 290 1 303 304 24 16 chr1 230646531 230646656 -12017697 - MIR SINE MIR -117 145 20 833 135 8 0 chr1 230647315 230647441 -12016912 + FLAM_C SINE Alu 7 133 -10 191 32 65 0 chr1 230648551 230648582 -12015771 + T-rich Low_complexity Low_complexity 3 35 0 1252 201 44 27 chr1 230649606 230649899 -12014454 - AluJo SINE Alu -14 298 1 2899 82 0 0 chr1 230650916 230651280 -12013073 - THE1B LTR MaLR 0 364 1 249 222 0 0 chr1 230652178 230652241 -12012112 + (TG)n Simple_repeat Simple_repeat 1 63 0 214 200 60 20 chr1 230653382 230653432 -12010921 + MIR SINE MIR 123 174 -88 327 85 0 0 chr1 230654195 230654242 -12010111 + (TG)n Simple_repeat Simple_repeat 1 47 0 438 344 54 5 chr1 230654527 230654713 -12009640 - MIR SINE MIR -19 243 49 205 365 118 18 chr1 230655623 230655793 -12008560 + L2 LINE L2 3086 3272 0 213 121 0 0 chr1 230657047 230657080 -12007273 + (TTCTCC)n Simple_repeat Simple_repeat 4 36 0 235 250 0 0 chr1 230657165 230657217 -12007136 + L2 LINE L2 3221 3272 0 2143 98 10 7 chr1 230657262 230657567 -12006786 + AluSg SINE Alu 1 306 -4 245 301 179 24 chr1 230658708 230658831 -12005522 + MIR SINE MIR 71 212 -50 426 275 91 80 chr1 230659775 230660291 -12004062 + MLT1K LTR MaLR 62 610 -5 2287 164 53 27 chr1 230660341 230660791 -12003562 + MLT2C2 LTR ERVL 3 464 0 1102 129 0 6 chr1 230662627 230662790 -12001563 + AluJo SINE Alu 1 162 -150 2476 116 83 8 chr1 230663324 230663722 -12000631 - MSTA LTR MaLR 0 428 1 2060 140 0 77 chr1 230663759 230664124 -12000229 - MER1B DNA MER1_type 0 337 1 203 293 23 30 chr1 230664151 230664284 -12000069 - L2 LINE L2 -125 3188 3057 1055 203 102 2 chr1 230664295 230664729 -11999624 + MLT1D LTR MaLR 1 503 -2 1863 228 105 128 chr1 230664744 230665849 -11998504 - L2 LINE L2 -248 3065 1998 212 358 0 0 chr1 230665869 230665936 -11998417 - MIR SINE MIR -181 81 15 237 245 0 0 chr1 230665951 230666000 -11998353 + (TGAA)n Simple_repeat Simple_repeat 2 50 0 678 162 120 0 chr1 230666117 230666234 -11998119 - FLAM_C SINE Alu -11 132 2 216 0 0 0 chr1 230667202 230667226 -11997127 + (TA)n Simple_repeat Simple_repeat 2 25 0 2299 95 0 0 chr1 230667226 230667531 -11996822 - AluSx SINE Alu -7 305 1 572 105 23 0 chr1 230669109 230669195 -11995158 - AluJ/FLAM SINE Alu -224 88 1 865 224 140 29 chr1 230669195 230669467 -11994886 - MER21B LTR ERV1 -547 316 15 253 237 0 0 chr1 230669467 230669526 -11994827 + (TA)n Simple_repeat Simple_repeat 1 59 0 374 322 0 0 chr1 230669527 230669617 -11994736 - L1MC4 LINE L1 -1339 6703 6614 373 250 0 43 chr1 230669545 230669637 -11994716 + L1MC4 LINE L1 6616 6703 -1339 * 369 250 34 11 chr1 230669629 230669717 -11994636 - L1MC4 LINE L1 -1339 6703 6614 * 319 289 0 41 chr1 230669668 230669765 -11994588 + L1MC4 LINE L1 6614 6706 -1336 * 261 0 0 0 chr1 230669767 230669796 -11994557 + (TG)n Simple_repeat Simple_repeat 2 30 0 262 322 40 50 chr1 230669971 230670170 -11994183 + MIR SINE MIR 66 262 0 2175 105 0 3 chr1 230670657 230670953 -11993400 + AluSq SINE Alu 1 295 -18 275 350 44 28 chr1 230672169 230672275 -11992078 - MER5A DNA MER1_type -6 183 71 1559 155 3 98 chr1 230672275 230672592 -11991761 - AluJb SINE Alu -15 287 1 275 350 44 28 chr1 230672592 230672665 -11991688 - MER5A DNA MER1_type -118 71 1 467 169 0 55 chr1 230672904 230673041 -11991312 + MER45 DNA AcHobo 60 1579 -2 1473 136 110 22 chr1 230673605 230673878 -11990475 + AluSx SINE Alu 1 297 -15 338 273 75 12 chr1 230674748 230674909 -11989444 - L1ME4a LINE L1 -4 6117 5947 2209 97 7 0 chr1 230674912 230675210 -11989143 - AluSq SINE Alu -13 300 1 771 248 120 41 chr1 230675342 230675851 -11988502 - L1ME4a LINE L1 -38 6083 5535 199 309 85 11 chr1 230675876 230675970 -11988383 - MIR SINE MIR -97 165 65 261 184 145 0 chr1 230676006 230676082 -11988271 - MIR SINE MIR -52 210 124 21 0 0 0 chr1 230676265 230676286 -11988067 + AT_rich Low_complexity Low_complexity 1 21 0 361 217 65 22 chr1 230677167 230677259 -11987094 + MIR SINE MIR 66 161 -101 513 284 158 0 chr1 230677521 230677736 -11986617 - MIR SINE MIR -2 260 12 558 0 0 0 chr1 230678262 230678324 -11986029 + (TTTTA)n Simple_repeat Simple_repeat 3 64 0 1867 136 4 0 chr1 230678329 230678608 -11985745 - AluSx SINE Alu -32 280 1 632 205 8 8 chr1 230678780 230678902 -11985451 + MSTD LTR MaLR 1 122 -274 1195 80 61 0 chr1 230679394 230679557 -11984796 - MER30 DNA MER1_type -56 174 2 1027 95 14 0 chr1 230680064 230680212 -11984141 + AluSg/x SINE Alu 156 305 -7 275 387 7 32 chr1 230680213 230680368 -11983985 - MIR3 SINE MIR -51 157 7 188 264 11 0 chr1 230680377 230680464 -11983889 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 316 327 173 0 chr1 230680566 230680670 -11983683 + MIR3 SINE MIR 5 126 -82 188 231 0 96 chr1 230680784 230680836 -11983517 + L2 LINE L2 3192 3238 -75 449 271 100 50 chr1 230681186 230681316 -11983037 + L1M4 LINE L1 4930 5052 -1094 2208 98 0 7 chr1 230681316 230681611 -11982742 - AluSc SINE Alu -16 293 1 449 271 100 50 chr1 230681611 230681720 -11982633 + L1M4 LINE L1 5052 5181 -965 575 231 98 35 chr1 230682474 230682677 -11981676 - MIR SINE MIR 0 262 47 957 194 73 0 chr1 230683078 230683269 -11981084 - MIR SINE MIR -25 237 33 1097 287 30 28 chr1 230683476 230683908 -11980445 + LTR16A LTR ERVL 3 435 -15 195 368 45 31 chr1 230684420 230684643 -11979710 + L2 LINE L2 2592 2817 -497 215 343 146 15 chr1 230684810 230684947 -11979406 + L2 LINE L2 3109 3263 -9 1833 109 20 37 chr1 230685278 230685595 -11978758 + AluSg SINE Alu 1 312 0 3209 239 45 35 chr1 230686421 230687386 -11976967 + Zaphod DNA AcHobo 20 993 -3038 1281 214 44 29 chr1 230687382 230687765 -11976588 + Zaphod DNA AcHobo 3596 3984 -47 * 2035 137 0 10 chr1 230687828 230688142 -11976211 - AluSx SINE Alu -1 311 1 2289 101 0 0 chr1 230688160 230688467 -11975886 - AluSc SINE Alu -2 307 1 2047 108 14 0 chr1 230688485 230688781 -11975572 - AluSq SINE Alu -13 300 1 460 241 98 0 chr1 230688788 230688921 -11975432 - MIR SINE MIR -8 254 109 897 163 34 45 chr1 230689643 230689821 -11974532 - FRAM SINE Alu 0 176 1 2227 92 20 0 chr1 230690003 230690306 -11974047 + AluSg SINE Alu 1 309 -1 255 278 0 0 chr1 230690825 230690879 -11973474 + polypyrimidine Low_complexity Low_complexity 1 54 0 180 0 0 0 chr1 230690895 230690915 -11973438 + (CA)n Simple_repeat Simple_repeat 2 21 0 180 286 0 18 chr1 230690921 230690977 -11973376 - L2 LINE L2 -39 3233 3179 480 252 19 0 chr1 230691010 230691113 -11973240 + MER5A DNA MER1_type 9 113 -76 22 0 0 0 chr1 230691477 230691499 -11972854 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 230700119 230700151 -11964202 + GC_rich Low_complexity Low_complexity 1 32 0 186 250 16 47 chr1 230701431 230701495 -11962858 + L2 LINE L2 3200 3261 -11 7553 35 0 6 chr1 230702113 230703220 -11961133 - L1PA4 LINE L1 -3 6152 5047 686 216 30 129 chr1 230704142 230704373 -11959980 + MIR SINE MIR 7 210 -52 1701 183 7 13 chr1 230704373 230704674 -11959679 - AluJo SINE Alu -13 299 1 686 216 30 129 chr1 230704674 230704706 -11959647 + MIR SINE MIR 210 244 -18 448 300 20 20 chr1 230706027 230706177 -11958176 - MIR SINE MIR -98 164 15 550 250 152 34 chr1 230707331 230707535 -11956818 + MIR SINE MIR 12 239 -23 462 233 0 92 chr1 230707678 230707841 -11956512 + MLT1E2 LTR MaLR 10 157 -469 277 211 39 29 chr1 230708093 230708197 -11956156 + MLT1E2 LTR MaLR 201 305 -200 2612 27 0 7 chr1 230708758 230709058 -11955295 - AluY SINE Alu -13 298 1 207 0 0 0 chr1 230709072 230709095 -11955258 + (TA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr1 230709406 230709430 -11954923 + (T)n Simple_repeat Simple_repeat 1 24 0 861 148 0 125 chr1 230711153 230711369 -11952984 - MER53 DNA DNA 0 189 1 203 133 0 0 chr1 230711651 230711681 -11952672 + L2 LINE L2 3266 3295 -18 262 267 85 80 chr1 230712292 230712468 -11951885 - MIR SINE MIR -9 253 77 362 273 80 53 chr1 230712817 230713004 -11951349 + MIR3 SINE MIR 9 200 -8 313 281 34 0 chr1 230713093 230713182 -11951171 - L2 LINE L2 0 3272 3181 398 277 15 8 chr1 230713883 230714013 -11950340 - MER94 DNA DNA -2 132 2 420 214 107 10 chr1 230714595 230714698 -11949655 - MER81 DNA DNA 0 114 2 616 301 125 28 chr1 230715094 230715446 -11948907 - L2 LINE L2 -40 3273 2888 1013 199 116 157 chr1 230715501 230715570 -11948783 - MLT1A1 LTR MaLR 0 396 326 1992 154 3 6 chr1 230715570 230715882 -11948471 + AluSx SINE Alu 1 311 -1 1013 199 116 157 chr1 230715882 230716225 -11948128 - MLT1A1 LTR MaLR -70 326 1 1235 293 75 19 chr1 230716225 230716703 -11947650 - L2 LINE L2 -522 2792 2288 3051 152 58 26 chr1 230716716 230717071 -11947282 + L1MB3 LINE L1 5559 5942 -241 2465 70 3 3 chr1 230717071 230717369 -11946984 + AluY SINE Alu 1 298 -13 3051 152 58 26 chr1 230717369 230717619 -11946734 + L1MB3 LINE L1 5942 6183 0 180 271 14 14 chr1 230717775 230717845 -11946508 - L2 LINE L2 -1105 2209 2140 2040 277 32 17 chr1 230718887 230719047 -11945306 + MER69 DNA AcHobo 1 157 -2369 2314 117 3 0 chr1 230719047 230719347 -11945006 + AluSx SINE Alu 1 301 -11 2040 277 32 17 chr1 230719347 230719836 -11944517 + MER69 DNA AcHobo 157 660 -1866 3575 42 16 0 chr1 230719836 230720268 -11944085 + L1PA5 LINE L1 5716 6154 0 23 0 0 0 chr1 230720268 230720291 -11944062 + AT_rich Low_complexity Low_complexity 1 23 0 303 28 0 0 chr1 230721402 230721438 -11942915 + (CA)n Simple_repeat Simple_repeat 2 37 0 1475 226 3 14 chr1 230721847 230722143 -11942210 - AluJo SINE Alu -19 293 1 188 263 97 44 chr1 230723205 230723319 -11941034 - L2 LINE L2 -10 3262 3143 2208 88 39 0 chr1 230723436 230723721 -11940632 + AluSx SINE Alu 1 296 -16 278 309 0 0 chr1 230723917 230723985 -11940368 - MIR SINE MIR -105 103 36 2363 105 0 3 chr1 230727771 230728084 -11936269 - AluSx SINE Alu 0 312 1 775 223 56 88 chr1 230728108 230728449 -11935904 - L1ME2 LINE L1 -8 6156 5827 2235 74 3 11 chr1 230729289 230729599 -11934754 - AluY SINE Alu 0 308 1 961 192 10 68 chr1 230729839 230730131 -11934222 - L1ME2 LINE L1 -786 5360 5086 1542 186 0 0 chr1 230730231 230730484 -11933869 - AluJb SINE Alu -59 253 1 210 217 0 50 chr1 230731009 230731069 -11933284 - MIR SINE MIR -64 144 88 580 92 0 82 chr1 230733675 230733773 -11930580 + HY4 scRNA scRNA 1 90 -3 624 156 0 0 chr1 230733773 230733882 -11930471 + GA-rich Low_complexity Low_complexity 1 109 0 2472 57 0 3 chr1 230734024 230734322 -11930031 - AluY SINE Alu -14 297 1 201 358 83 9 chr1 230734405 230734514 -11929839 + L2 LINE L2 3114 3230 -42 426 165 80 170 chr1 230734582 230734770 -11929583 - MER91A DNA MER1_type -25 171 1 364 309 32 24 chr1 230735630 230735753 -11928600 - L2 LINE L2 0 3272 3149 670 227 130 0 chr1 230736863 230737017 -11927336 + FAM SINE Alu 2 175 0 799 183 0 16 chr1 230737103 230737229 -11927124 - AluJ SINE Alu -55 257 134 1777 84 0 0 chr1 230737229 230737454 -11926899 - AluY SINE Alu -2 309 85 26 0 0 0 chr1 230737632 230737658 -11926695 + AT_rich Low_complexity Low_complexity 1 26 0 1484 258 35 63 chr1 230737672 230738353 -11926000 + L1MD1 LINE L1 5315 5976 -266 1259 195 30 30 chr1 230738372 230738669 -11925684 + L1MD1 LINE L1 5946 6242 0 214 384 88 32 chr1 230740051 230740176 -11924177 - L2 LINE L2 -4 3268 3137 729 264 169 34 chr1 230740189 230740633 -11923720 - MLT1J LTR MaLR -1 510 7 247 242 0 22 chr1 230741743 230741834 -11922519 + C-rich Low_complexity Low_complexity 5 93 0 237 137 0 59 chr1 230741984 230742035 -11922318 + (TTCTC)n Simple_repeat Simple_repeat 4 51 0 415 352 40 11 chr1 230742038 230742214 -11922139 - L2 LINE L2 -6 3266 3086 298 316 151 27 chr1 230742423 230742908 -11921445 - L2 LINE L2 -558 2756 2212 396 210 0 70 chr1 230744924 230745024 -11919329 - MIR SINE MIR -22 240 148 709 177 16 8 chr1 230745603 230745727 -11918626 - AluJ SINE Alu -185 127 3 1237 92 7 0 chr1 230746101 230746253 -11918100 + AluSq SINE Alu 1 153 -160 1531 99 5 0 chr1 230746353 230746544 -11917809 + AluSp SINE Alu 106 297 -16 374 321 91 23 chr1 230746547 230746812 -11917541 - L1M4 LINE L1 -1134 5012 4730 252 286 12 0 chr1 230746824 230746908 -11917445 + T-rich Low_complexity Low_complexity 5 89 0 2222 142 11 13 chr1 230746908 230747281 -11917072 - MER72 LTR ERV1 -26 696 325 482 319 97 29 chr1 230747283 230747562 -11916791 - L1M4 LINE L1 -1465 4681 4384 2275 103 0 0 chr1 230747676 230747967 -11916386 - AluSx SINE Alu -16 296 6 245 318 12 12 chr1 230748842 230748927 -11915426 - MIR SINE MIR -109 153 69 202 271 0 0 chr1 230749140 230749188 -11915165 + C-rich Low_complexity Low_complexity 6 53 0 1570 201 35 3 chr1 230749657 230749946 -11914407 - AluJo SINE Alu -14 298 1 694 260 61 25 chr1 230750561 230750757 -11913596 - MIR SINE MIR -41 221 19 2283 175 5 24 chr1 230750983 230751405 -11912948 + MLT2D LTR ERVL 1 414 0 233 282 68 26 chr1 230752474 230752591 -11911762 + L2 LINE L2 3150 3271 -1 2023 98 6 92 chr1 230753136 230753471 -11910882 + AluSq SINE Alu 6 311 -2 1783 110 57 15 chr1 230753618 230753882 -11910471 + AluSg SINE Alu 12 286 -24 361 321 0 22 chr1 230754028 230754162 -11910191 - MIR SINE MIR -5 257 127 2463 104 34 70 chr1 230754163 230754604 -11909749 + MER4A LTR ERV1 1 425 -239 786 123 190 37 chr1 230754618 230754781 -11909572 + MER4C LTR ERV1 278 465 0 462 260 124 63 chr1 230754827 230754991 -11909362 - LTR16C LTR ERVL 0 491 338 824 178 40 17 chr1 230754991 230755165 -11909188 + MER45A DNA AcHobo 1 178 0 462 260 124 63 chr1 230755165 230755396 -11908957 - LTR16C LTR ERVL -153 338 72 928 188 6 0 chr1 230755829 230755994 -11908359 - FRAM SINE Alu -11 165 1 34 0 0 0 chr1 230755994 230756028 -11908325 + AT_rich Low_complexity Low_complexity 1 34 0 1904 151 0 3 chr1 230756032 230756317 -11908036 - AluSx SINE Alu -18 294 11 34 0 0 0 chr1 230756327 230756361 -11907992 + AT_rich Low_complexity Low_complexity 1 34 0 809 157 0 0 chr1 230756364 230756485 -11907868 - FLAM_C SINE Alu -20 123 3 1732 120 21 0 chr1 230756799 230757041 -11907312 + AluSx SINE Alu 45 291 -21 205 194 194 0 chr1 230758312 230758374 -11905979 - L3b LINE CR1 -107 1476 1403 680 238 106 0 chr1 230759581 230759741 -11904612 - MER45A DNA AcHobo 0 178 2 6491 92 12 1 chr1 230759914 230760883 -11903470 + L1PA14 LINE L1 5174 6152 -9 1503 272 72 53 chr1 230761002 230761806 -11902547 - L1MEd LINE L1 -4862 1257 439 341 278 131 5 chr1 230761820 230762011 -11902342 - L1MEd LINE L1 -5903 216 2 1647 112 30 54 chr1 230763244 230763292 -11901061 - L1MB3 LINE L1 -3 6180 6132 2219 108 7 3 chr1 230763292 230763589 -11900764 - AluSp SINE Alu -15 298 1 1647 112 30 54 chr1 230763589 230763835 -11900518 - L1MB3 LINE L1 -51 6132 5893 221 244 158 37 chr1 230764629 230764711 -11899642 + L2 LINE L2 3183 3274 -39 22 0 0 0 chr1 230764895 230764917 -11899436 + AT_rich Low_complexity Low_complexity 1 22 0 317 277 9 62 chr1 230765748 230765860 -11898493 - L2 LINE L2 -11 3261 3156 597 224 173 22 chr1 230766739 230766918 -11897435 - MLT1J2 LTR MaLR 0 450 245 3395 119 42 27 chr1 230767011 230767530 -11896823 - MER1A DNA MER1_type 0 527 1 321 239 37 55 chr1 230767641 230767750 -11896603 + MIR SINE MIR 117 223 -39 238 273 0 0 chr1 230768398 230768464 -11895889 - L1P2 LINE L1 -326 5828 5763 189 107 0 0 chr1 230768928 230768956 -11895397 + (TTCCC)n Simple_repeat Simple_repeat 4 31 0 25 0 0 0 chr1 230769149 230769174 -11895179 + GC_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr1 230769774 230769805 -11894548 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 230772012 230772033 -11892320 + AT_rich Low_complexity Low_complexity 1 21 0 2449 84 0 0 chr1 230773703 230773999 -11890354 + AluSg SINE Alu 1 296 -14 2209 105 0 3 chr1 230774685 230774971 -11889382 - AluSx SINE Alu -27 285 1 254 148 19 0 chr1 230775814 230775868 -11888485 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 256 175 0 50 chr1 230776625 230776705 -11887648 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 260 256 73 0 chr1 230776706 230776788 -11887565 + L1MC4 LINE L1 6616 6703 -1339 189 0 0 0 chr1 230777582 230777603 -11886750 + (CA)n Simple_repeat Simple_repeat 2 22 0 906 160 37 37 chr1 230779626 230779813 -11884540 + AluJo SINE Alu 1 187 -125 * 1242 115 5 53 chr1 230779812 230780021 -11884332 + AluJb SINE Alu 112 310 -2 2166 168 28 28 chr1 230781444 230781635 -11882718 + Tigger2a DNA MER2_type 1 191 -2517 2199 95 41 0 chr1 230781635 230781929 -11882424 - AluSx SINE Alu -6 306 1 2166 168 28 28 chr1 230781929 230782171 -11882182 + Tigger2a DNA MER2_type 190 434 0 234 0 0 0 chr1 230782688 230782714 -11881639 + (TC)n Simple_repeat Simple_repeat 1 26 0 324 0 0 0 chr1 230782727 230782763 -11881590 + (CA)n Simple_repeat Simple_repeat 1 36 0 821 243 43 24 chr1 230783316 230783571 -11880782 + MIR SINE MIR 2 261 -1 211 320 96 16 chr1 230783692 230783817 -11880536 + L2 LINE L2 1856 1990 -1324 254 196 0 0 chr1 230783949 230783995 -11880358 + L2 LINE L2 3262 3307 -6 1965 162 0 7 chr1 230784162 230784471 -11879882 - AluJb SINE Alu -5 307 1 1023 154 0 12 chr1 230784705 230784867 -11879486 + FRAM SINE Alu 4 163 -13 2394 100 0 0 chr1 230784872 230785172 -11879181 - AluSg SINE Alu -6 304 5 330 76 0 139 chr1 230785450 230785513 -11878840 - ORSL DNA AcHobo -40 235 183 1752 161 20 33 chr1 230785513 230785818 -11878535 + AluJb SINE Alu 1 301 -11 330 76 0 139 chr1 230785818 230785833 -11878520 - ORSL DNA AcHobo -92 183 168 21 36 0 0 chr1 230786015 230786043 -11878310 + AT_rich Low_complexity Low_complexity 1 28 0 303 354 46 21 chr1 230786046 230786283 -11878070 + L2 LINE L2 2130 2372 -942 503 266 38 25 chr1 230787217 230787375 -11876978 - MIR SINE MIR -90 172 13 34 24 0 0 chr1 230787893 230787934 -11876419 + AT_rich Low_complexity Low_complexity 1 41 0 1045 256 77 68 chr1 230788230 230788672 -11875681 + MLT1J2 LTR MaLR 2 447 -3 615 261 70 94 chr1 230788688 230789060 -11875293 + MLT1J LTR MaLR 100 462 -49 336 355 17 12 chr1 230789082 230789254 -11875099 + L2 LINE L2 2671 2843 -471 488 251 153 33 chr1 230789288 230789563 -11874790 + L2 LINE L2 2987 3294 -19 339 232 87 0 chr1 230789641 230789710 -11874643 - Tigger2 DNA MER2_type -1 2717 2643 2299 113 0 0 chr1 230790007 230790309 -11874044 + AluY SINE Alu 1 302 -9 1481 263 115 30 chr1 230790707 230791166 -11873187 + MLT1K LTR MaLR 3 516 -72 1749 171 7 29 chr1 230791166 230791475 -11872878 - AluJo SINE Alu -10 302 1 1481 263 115 30 chr1 230791475 230791555 -11872798 + MLT1K LTR MaLR 516 588 0 2026 203 54 11 chr1 230792888 230793336 -11871017 + MLT1C LTR MaLR 1 467 0 2279 115 0 0 chr1 230793647 230793942 -11870411 - AluSg SINE Alu -15 295 1 199 274 49 39 chr1 230794561 230794663 -11869690 + MIR3 SINE MIR 106 208 0 1070 168 11 118 chr1 230795640 230795796 -11868557 + L1PA16 LINE L1 5901 6015 -151 2389 96 0 0 chr1 230795796 230796099 -11868254 - AluSx SINE Alu -9 303 1 1070 168 11 118 chr1 230796099 230796222 -11868131 + L1PA16 LINE L1 6015 6150 -16 1228 276 34 41 chr1 230796246 230796742 -11867611 + L1ME4a LINE L1 5564 6057 -64 2294 108 0 3 chr1 230796742 230797049 -11867304 - AluSc SINE Alu -3 306 1 1228 276 34 41 chr1 230797049 230797109 -11867244 + L1ME4a LINE L1 6057 6116 -5 266 304 0 11 chr1 230798449 230798541 -11865812 + MIR SINE MIR 41 131 -131 822 139 20 20 chr1 230799281 230799538 -11864815 + GA-rich Low_complexity Low_complexity 1 257 0 648 162 20 7 chr1 230799555 230799703 -11864650 + GA-rich Low_complexity Low_complexity 1 150 0 428 75 15 0 chr1 230799881 230799909 -11864444 + (GA)n Simple_repeat Simple_repeat 1 27 -41 225 0 0 0 chr1 230799909 230799934 -11864419 + (CA)n Simple_repeat Simple_repeat 2 26 0 428 75 15 0 chr1 230799934 230799972 -11864381 + (GA)n Simple_repeat Simple_repeat 27 68 0 5177 134 16 10 chr1 230800682 230800847 -11863506 + L1PA16 LINE L1 5320 5482 -684 2298 99 0 0 chr1 230800847 230801141 -11863212 + AluSg SINE Alu 1 294 -16 5177 134 16 10 chr1 230801141 230801797 -11862556 + L1PA16 LINE L1 5482 6146 -20 1022 179 9 38 chr1 230802626 230802838 -11861515 - MIR SINE MIR -11 251 46 2306 166 16 3 chr1 230802960 230803345 -11861008 - MLT1B LTR MaLR 0 390 1 294 236 38 0 chr1 230803602 230803708 -11860645 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 942 243 62 30 chr1 230804739 230805068 -11859285 + MLT1I LTR MaLR 68 450 0 253 254 17 0 chr1 230805589 230805648 -11858705 + L2 LINE L2 3254 3313 0 36 62 0 0 chr1 230806421 230806485 -11857868 + AT_rich Low_complexity Low_complexity 1 64 0 202 406 21 14 chr1 230806590 230806733 -11857620 + L2 LINE L2 3122 3265 -7 2173 118 0 0 chr1 230806927 230807214 -11857139 + AluSx SINE Alu 11 297 -15 488 156 94 46 chr1 230807271 230807344 -11857009 - MIR SINE MIR -13 249 181 1518 297 92 25 chr1 230807344 230807900 -11856453 + MLT1E LTR MaLR 1 593 0 488 156 94 46 chr1 230807900 230807966 -11856387 - MIR SINE MIR -81 181 101 3221 140 83 10 chr1 230808248 230808287 -11856066 - MLT2B3 LTR ERVL -1 553 518 598 58 23 0 chr1 230808287 230808374 -11855979 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 3221 140 83 10 chr1 230808374 230808849 -11855504 - MLT2B3 LTR ERVL -36 518 1 240 35 0 0 chr1 230808974 230809003 -11855350 + (TG)n Simple_repeat Simple_repeat 2 30 0 2662 161 11 27 chr1 230809018 230809459 -11854894 - Tigger2a DNA MER2_type 0 434 1 223 28 56 0 chr1 230809462 230809498 -11854855 + (CA)n Simple_repeat Simple_repeat 2 39 0 245 180 0 20 chr1 230809535 230809585 -11854768 - MLT1E3 LTR MaLR -8 616 568 943 61 0 0 chr1 230809598 230809712 -11854641 - AluY SINE Alu -170 141 28 457 294 81 64 chr1 230809748 230810490 -11853863 - L1MC/D LINE L1 -763 5383 4888 2032 133 0 29 chr1 230810756 230811071 -11853282 - AluSx SINE Alu -6 306 1 6497 179 14 22 chr1 230811161 230812498 -11851855 + L1MA9 LINE L1 3900 5247 -1065 278 29 0 0 chr1 230812498 230812533 -11851820 + MADE1 DNA Mariner 16 50 -30 426 102 0 0 chr1 230812534 230812593 -11851760 + MADE1 DNA Mariner 18 76 -4 6497 179 14 22 chr1 230812593 230813145 -11851208 + L1MA9 LINE L1 5246 5779 -533 2299 156 75 13 chr1 230813328 230813795 -11850558 + L1MA9 LINE L1 5782 6277 -35 373 294 44 22 chr1 230816164 230816300 -11848053 + MIR3 SINE MIR 5 143 -65 251 305 68 8 chr1 230816355 230816473 -11847880 + MER94 DNA DNA 2 126 -8 189 0 0 0 chr1 230816782 230816803 -11847550 + (CATGC)n Simple_repeat Simple_repeat 1 21 0 1513 229 122 59 chr1 230818795 230819459 -11844894 + MER50 LTR ERV1 10 715 -19 215 320 109 62 chr1 230820885 230821013 -11843340 - L2 LINE L2 -38 3234 3101 266 242 141 8 chr1 230821527 230821655 -11842698 - L1ME4a LINE L1 -71 6050 5906 754 68 0 75 chr1 230821839 230822277 -11842076 + (CTCA)n Simple_repeat Simple_repeat 1 405 0 2220 75 22 50 chr1 230822293 230822615 -11841738 - AluSq SINE Alu 0 313 1 2155 74 11 0 chr1 230823088 230823379 -11840974 + AluSc SINE Alu 11 304 0 3825 107 19 10 chr1 230823389 230823911 -11840442 + MER1A DNA MER1_type 1 527 0 225 236 0 0 chr1 230824046 230824152 -11840201 + CT-rich Low_complexity Low_complexity 1 106 0 565 264 202 5 chr1 230824218 230824411 -11839942 - MIR SINE MIR -29 233 3 1989 164 23 48 chr1 230825598 230825994 -11838359 + MLT1B LTR MaLR 1 386 -4 505 276 96 25 chr1 230826295 230826433 -11837920 - L2 LINE L2 -3 3310 3152 198 0 0 0 chr1 230826433 230826455 -11837898 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 505 276 96 25 chr1 230826455 230826515 -11837838 - L2 LINE L2 -161 3152 3098 371 285 77 8 chr1 230826588 230826718 -11837635 + L2 LINE L2 2553 2691 -623 2883 192 38 36 chr1 230826735 230827319 -11837034 + MER82 DNA MER2_type 2 586 -67 1289 186 42 114 chr1 230827334 230827720 -11836633 + MLT1A1 LTR MaLR 3 360 -5 260 188 94 16 chr1 230827915 230827979 -11836374 + L2 LINE L2 3204 3272 0 367 308 157 5 chr1 230829388 230829573 -11834780 - MIR SINE MIR -6 256 44 219 302 42 31 chr1 230829613 230829709 -11834644 + MIR SINE MIR 96 192 -70 615 258 102 5 chr1 230832026 230832212 -11832141 - MIR SINE MIR -30 232 29 352 295 160 13 chr1 230832375 230832531 -11831822 - MIR SINE MIR -64 198 20 321 197 0 0 chr1 230834516 230834587 -11829766 + (TG)n Simple_repeat Simple_repeat 2 72 0 435 297 196 20 chr1 230836075 230836520 -11827833 + L1ME4a LINE L1 3702 4224 -1922 517 247 185 7 chr1 230836565 230836711 -11827642 - MIR SINE MIR -90 172 1 346 302 76 21 chr1 230836755 230837268 -11827085 + L1ME4a LINE L1 4308 4848 -1298 238 251 15 3 chr1 230837560 230837642 -11826711 + L1ME4a LINE L1 5350 5431 -724 775 274 50 22 chr1 230837915 230838232 -11826121 + L1ME3A LINE L1 5841 6166 -4 274 286 76 59 chr1 230838342 230838461 -11825892 + L2 LINE L2 3193 3313 0 451 233 75 11 chr1 230838678 230838882 -11825471 + L1P5 LINE L1 5255 5447 -709 507 254 65 49 chr1 230838887 230839072 -11825281 - L2 LINE L2 -1 3312 3125 933 119 73 13 chr1 230839088 230839239 -11825114 + L1MC1 LINE L1 6168 6327 -6 239 247 27 14 chr1 230839239 230839303 -11825050 + GA-rich Low_complexity Low_complexity 8 75 0 183 42 0 0 chr1 230839303 230839327 -11825026 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 602 167 11 43 chr1 230839327 230839513 -11824840 + GA-rich Low_complexity Low_complexity 1 180 0 1130 218 86 107 chr1 230839630 230840280 -11824073 - L2 LINE L2 -225 3088 2447 2069 272 94 37 chr1 230840280 230841192 -11823161 - L2 LINE L2 -2333 981 18 660 316 103 22 chr1 230841390 230841932 -11822421 + L1ME4a LINE L1 5491 6076 -45 23 33 0 0 chr1 230841952 230841982 -11822371 + AT_rich Low_complexity Low_complexity 1 30 0 1463 184 77 4 chr1 230842031 230842303 -11822050 + AluJo SINE Alu 1 292 -20 390 273 77 35 chr1 230843210 230843353 -11821000 + MIR SINE MIR 51 199 -63 651 253 53 5 chr1 230843708 230843898 -11820455 + L1ME1 LINE L1 90 288 -5917 350 279 91 43 chr1 230843984 230844192 -11820161 - L1MC5 LINE L1 -30 7931 7714 570 234 35 7 chr1 230844362 230844503 -11819850 - L1MC5 LINE L1 -1124 6837 6693 * 1668 231 101 44 chr1 230844496 230845288 -11819065 + L1ME1 LINE L1 884 1720 -4676 * 5823 217 85 38 chr1 230845270 230845344 -11819009 + L1ME1 LINE L1 3620 3689 -2546 2096 144 7 0 chr1 230845344 230845650 -11818703 - AluSx SINE Alu -4 308 1 5823 217 85 38 chr1 230845650 230847364 -11816989 + L1ME1 LINE L1 3689 5322 -913 2004 113 11 121 chr1 230847364 230847715 -11816638 - MER44D DNA MER2_type -1882 609 32 1958 126 38 0 chr1 230847715 230848008 -11816345 + AluSp SINE Alu 2 305 -8 2004 113 11 121 chr1 230848008 230848037 -11816316 - MER44D DNA MER2_type -2459 32 1 5823 217 85 38 chr1 230848037 230848066 -11816287 + L1ME1 LINE L1 5322 5348 -887 1376 168 54 119 chr1 230848066 230848453 -11815900 - MLT1A1 LTR MaLR 0 365 4 5823 217 85 38 chr1 230848453 230849038 -11815315 + L1ME1 LINE L1 5348 6134 -101 322 258 70 16 chr1 230848981 230849109 -11815244 + L1MA10 LINE L1 6237 6371 -32 * 2386 92 0 0 chr1 230849195 230849489 -11814864 + AluSc SINE Alu 1 294 -15 316 277 101 0 chr1 230849630 230849749 -11814604 + L1MC4 LINE L1 7120 7250 -792 301 279 34 72 chr1 230849716 230849924 -11814429 + L1MC4a LINE L1 7211 7410 -398 * 21 36 0 0 chr1 230850375 230850403 -11813950 + AT_rich Low_complexity Low_complexity 1 28 0 213 286 0 18 chr1 230850414 230850470 -11813883 - L2 LINE L2 -15 3257 3203 241 294 44 7 chr1 230850489 230850625 -11813728 - L1ME3A LINE L1 -233 5937 5797 244 272 72 32 chr1 230850652 230850777 -11813576 - L1P3 LINE L1 -418 5754 5625 * 350 323 36 26 chr1 230850772 230850964 -11813389 - L1ME3A LINE L1 -528 5593 5400 2340 107 10 0 chr1 230851027 230851336 -11813017 - AluSx SINE Alu 0 312 1 2420 73 3 0 chr1 230853011 230853297 -11811056 + AluSc SINE Alu 1 287 -22 760 321 145 38 chr1 230853947 230854449 -11809904 - L3 LINE CR1 -3 1574 1019 2282 115 44 22 chr1 230854830 230855196 -11809157 - THE1C LTR MaLR -1 374 1 227 246 56 99 chr1 230855508 230855650 -11808703 - L3 LINE CR1 -691 886 751 376 281 65 0 chr1 230856726 230856882 -11807471 + MIR SINE MIR 90 256 -6 216 339 181 20 chr1 230857532 230857786 -11806567 + L2 LINE L2 2949 3243 -29 2172 135 0 22 chr1 230857829 230858167 -11806186 + AluSx SINE Alu 2 332 0 1991 130 3 62 chr1 230858169 230858492 -11805861 + AluSx SINE Alu 1 304 -8 227 133 22 0 chr1 230859837 230859882 -11804471 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 2063 141 0 3 chr1 230860003 230860026 -11804327 - AluSx SINE Alu -9 303 281 381 22 0 0 chr1 230860026 230860072 -11804281 + (TG)n Simple_repeat Simple_repeat 1 46 0 2063 141 0 3 chr1 230860072 230860352 -11804001 - AluSx SINE Alu -31 281 1 1643 198 6 16 chr1 230861882 230862195 -11802158 - AluJo SINE Alu -2 310 1 442 306 67 34 chr1 230862730 230862998 -11801355 - L2 LINE L2 -815 2499 2223 195 346 16 39 chr1 230863156 230863283 -11801070 - L2 LINE L2 -1487 1827 1704 306 0 0 0 chr1 230863534 230863568 -11800785 + (TG)n Simple_repeat Simple_repeat 2 35 0 319 311 47 19 chr1 230864590 230864696 -11799657 + MIR3 SINE MIR 100 208 0 2315 91 0 24 chr1 230865400 230865698 -11798655 - AluY SINE Alu -20 291 1 1976 170 8 24 chr1 230867048 230867115 -11797238 + MLT1A1 LTR MaLR 1 68 -297 2518 104 31 17 chr1 230867115 230867472 -11796881 - THE1B LTR MaLR 0 364 3 1976 170 8 24 chr1 230867472 230867774 -11796579 + MLT1A1 LTR MaLR 68 364 -1 464 262 170 27 chr1 230867809 230868177 -11796176 - L2 LINE L2 -244 3069 2628 271 339 24 16 chr1 230870392 230870519 -11793834 + L2 LINE L2 2399 2526 -788 414 227 163 7 chr1 230870525 230870666 -11793687 + MIR SINE MIR 100 262 0 1849 168 7 10 chr1 230870668 230870966 -11793387 - AluJo SINE Alu -15 297 1 2316 100 0 3 chr1 230871116 230871415 -11792938 + AluSg SINE Alu 1 298 -12 714 279 6 17 chr1 230872165 230872344 -11792009 - MER5B DNA MER1_type 0 178 2 197 0 71 0 chr1 230873438 230873466 -11790887 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 272 234 123 64 chr1 230873498 230873669 -11790684 - L3b LINE CR1 -201 1382 1202 307 304 156 30 chr1 230874385 230874622 -11789731 - L2 LINE L2 -924 2390 2124 2249 119 0 10 chr1 230874892 230875203 -11789150 + AluSc SINE Alu 1 308 -1 290 313 78 9 chr1 230875318 230875433 -11788920 - L2 LINE L2 -25 3247 3125 239 177 242 0 chr1 230875493 230875555 -11788798 - L2 LINE L2 -73 3199 3123 342 0 0 0 chr1 230877188 230877226 -11787127 + (TG)n Simple_repeat Simple_repeat 1 38 0 181 367 0 0 chr1 230877753 230877832 -11786521 - MIR SINE MIR -71 137 59 360 43 0 0 chr1 230882572 230882618 -11781735 + (TG)n Simple_repeat Simple_repeat 1 46 0 302 183 14 0 chr1 230882961 230883032 -11781321 + GA-rich Low_complexity Low_complexity 1 72 0 2234 80 28 0 chr1 230886854 230887140 -11777213 + AluSg SINE Alu 1 294 -16 300 294 0 0 chr1 230887336 230887404 -11776949 - MIR SINE MIR -105 103 36 195 224 20 41 chr1 230887887 230887936 -11776417 + MIR SINE MIR 88 135 -73 677 303 117 26 chr1 230891041 230891235 -11773118 - L2 LINE L2 -21 3292 3117 1895 134 14 10 chr1 230891235 230891526 -11772827 + AluJo SINE Alu 1 292 -20 677 303 117 26 chr1 230891526 230891945 -11772408 - L2 LINE L2 -196 3117 2624 525 294 95 12 chr1 230892151 230892382 -11771971 + MIR SINE MIR 3 250 -12 643 239 0 0 chr1 230892425 230892542 -11771811 + FRAM SINE Alu 17 133 -43 984 272 76 56 chr1 230892597 230892732 -11771621 - L2 LINE L2 -3 3310 3179 192 111 0 0 chr1 230892732 230892768 -11771585 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 2359 86 0 3 chr1 230892771 230893061 -11771292 - AluSx SINE Alu -23 289 1 984 272 76 56 chr1 230893061 230893582 -11770771 - L2 LINE L2 -135 3178 2644 276 304 137 25 chr1 230894254 230894415 -11769938 - MIR SINE MIR -7 255 77 180 331 86 36 chr1 230894746 230894885 -11769468 + L2 LINE L2 3125 3270 -2 223 209 23 0 chr1 230895202 230895245 -11769108 - L2 LINE L2 -5 3267 3224 2321 103 0 0 chr1 230895685 230895977 -11768376 - AluSg SINE Alu -18 292 1 2491 82 0 0 chr1 230896469 230896773 -11767580 + AluSg SINE Alu 1 304 -6 263 179 60 0 chr1 230896873 230896940 -11767413 + GA-rich Low_complexity Low_complexity 2 72 0 231 114 0 0 chr1 230897390 230897425 -11766928 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1611 163 39 14 chr1 230897430 230897713 -11766640 - AluJo SINE Alu -22 290 1 258 365 10 0 chr1 230897972 230898076 -11766277 - L3 LINE CR1 -97 1480 1376 207 208 42 0 chr1 230898671 230898719 -11765634 - L2 LINE L2 -7 3265 3216 * 452 229 42 72 chr1 230898697 230898863 -11765490 - MIR SINE MIR -93 169 9 1582 269 139 42 chr1 230898884 230899024 -11765329 - L2 LINE L2 -5 3308 3183 2267 102 0 13 chr1 230899024 230899339 -11765014 + AluY SINE Alu 1 311 0 1582 269 139 42 chr1 230899339 230899526 -11764827 - L2 LINE L2 -130 3183 3016 2158 116 7 0 chr1 230899526 230900003 -11764350 + AluSq SINE Alu 6 484 0 1582 269 139 42 chr1 230900003 230900581 -11763772 - L2 LINE L2 -297 3016 2282 28 29 0 0 chr1 230900673 230900708 -11763645 + AT_rich Low_complexity Low_complexity 1 35 0 2396 65 3 19 chr1 230901147 230901457 -11762896 + AluY SINE Alu 1 305 -6 279 0 0 0 chr1 230902268 230902299 -11762054 + (CA)n Simple_repeat Simple_repeat 1 31 0 291 351 68 14 chr1 230902413 230902561 -11761792 + L2 LINE L2 3115 3270 -2 2458 77 3 10 chr1 230903568 230903881 -11760472 - AluY SINE Alu 0 311 1 193 248 368 0 chr1 230904378 230904495 -11759858 + MIR SINE MIR 13 172 -90 183 282 0 0 chr1 230904563 230904602 -11759751 - L2 LINE L2 -86 3186 3148 180 273 11 91 chr1 230906053 230906141 -11758212 - MIR3 SINE MIR -7 201 121 182 305 183 0 chr1 230906352 230906434 -11757919 + MIR SINE MIR 50 146 -62 201 196 0 0 chr1 230906434 230906480 -11757873 + (TAA)n Simple_repeat Simple_repeat 2 47 0 207 69 0 0 chr1 230906664 230906693 -11757660 + (CA)n Simple_repeat Simple_repeat 1 29 0 193 318 61 53 chr1 230907538 230907670 -11756683 - L2 LINE L2 -4 3268 3136 1204 211 50 84 chr1 230907696 230908136 -11756217 + L1ME2 LINE L1 5732 6156 -8 2097 132 7 0 chr1 230908160 230908449 -11755904 + AluSx SINE Alu 1 291 -21 1823 172 0 25 chr1 230908688 230909008 -11755345 - AluJo SINE Alu 0 312 1 197 308 63 63 chr1 230909146 230909289 -11755064 + L2 LINE L2 2905 3047 -225 388 214 106 88 chr1 230910691 230910774 -11753579 - MIR SINE MIR -20 242 162 903 180 51 88 chr1 230910774 230910991 -11753362 - MER63A DNA MER1_type -1 209 1 388 214 106 88 chr1 230910991 230911104 -11753249 - MIR SINE MIR -100 162 48 2120 174 14 3 chr1 230912748 230913109 -11751244 + MLT1A1 LTR MaLR 1 365 0 328 273 10 50 chr1 230913248 230913347 -11751006 + MIR SINE MIR 46 140 -122 29 0 0 0 chr1 230913380 230913409 -11750944 + AT_rich Low_complexity Low_complexity 1 29 0 468 250 109 0 chr1 230913870 230913998 -11750355 + MER63 DNA MER1_type 1 768 -68 511 241 60 60 chr1 230914075 230914241 -11750112 - MIR SINE MIR -77 185 20 560 279 29 29 chr1 230915816 230915988 -11748365 - MIR SINE MIR -57 205 34 2102 128 0 0 chr1 230916709 230917014 -11747339 + AluSx SINE Alu 1 305 0 1331 136 25 30 chr1 230919493 230919728 -11744625 + AluSg/x SINE Alu 79 312 0 1746 207 14 8 chr1 230919731 230920098 -11744255 + LTR49 LTR ERV1 227 595 0 230 327 19 29 chr1 230920753 230920857 -11743496 + MIR SINE MIR 60 162 -100 201 204 45 0 chr1 230921448 230921492 -11742861 - L2 LINE L2 -17 3255 3210 * 322 191 0 29 chr1 230921459 230921527 -11742826 - MIR SINE MIR -24 238 173 306 240 40 0 chr1 230921671 230921771 -11742582 - L1ME4a LINE L1 -4 6117 6014 1384 190 81 4 chr1 230922948 230923206 -11741147 - AluJo SINE Alu -34 278 1 216 304 0 0 chr1 230923594 230923650 -11740703 + C-rich Low_complexity Low_complexity 2 57 0 1712 269 138 42 chr1 230923650 230924056 -11740297 + L2 LINE L2 1985 2351 -962 3058 103 7 2 chr1 230924056 230924482 -11739871 + MSTA LTR MaLR 1 428 0 1712 269 138 42 chr1 230924482 230925287 -11739066 + L2 LINE L2 2351 3313 0 348 349 94 0 chr1 230925296 230925445 -11738908 + MIR SINE MIR 63 225 -37 253 319 176 5 chr1 230927167 230927383 -11736970 + MIR SINE MIR 2 254 -8 241 307 178 40 chr1 230928222 230928447 -11735906 + L2 LINE L2 3033 3288 -25 200 333 17 0 chr1 230928451 230928511 -11735842 - L2 LINE L2 -4 3309 3249 2035 189 73 9 chr1 230928594 230929059 -11735294 - MLT1D LTR MaLR -7 498 4 1510 224 110 21 chr1 230929284 230929476 -11734877 + MLT1C LTR MaLR 1 175 -292 195 42 0 0 chr1 230929476 230929500 -11734853 + (CAGAGA)n Simple_repeat Simple_repeat 6 29 0 1510 224 110 21 chr1 230929500 230929736 -11734617 + MLT1C LTR MaLR 175 467 0 2390 88 0 3 chr1 230930568 230930865 -11733488 - AluSx SINE Alu -16 296 1 769 293 105 47 chr1 230930865 230931398 -11732955 - L2 LINE L2 -7 3306 2736 462 49 0 0 chr1 230931402 230931463 -11732890 + (TG)n Simple_repeat Simple_repeat 1 61 0 396 243 0 0 chr1 230931497 230931608 -11732745 + CT-rich Low_complexity Low_complexity 3 113 0 192 319 162 29 chr1 230931616 230931826 -11732527 - L2 LINE L2 -621 2693 2456 449 281 88 26 chr1 230932125 230932317 -11732036 + MER63A DNA MER1_type 1 204 -6 486 326 52 0 chr1 230932598 230932733 -11731620 + MIR3 SINE MIR 28 169 -39 359 148 136 0 chr1 230935209 230935290 -11729063 - Charlie5 DNA MER1_type -27 2585 2494 882 214 17 0 chr1 230935391 230935569 -11728784 + MLT1C LTR MaLR 287 467 0 1877 280 101 29 chr1 230935570 230936519 -11727834 - L2 LINE L2 -587 2727 1710 197 268 49 55 chr1 230936524 230936688 -11727665 - L2 LINE L2 -1711 1603 1441 1461 128 0 25 chr1 230936806 230937049 -11727304 + L1MA5A LINE L1 6058 6294 -3 21 0 0 0 chr1 230937049 230937070 -11727283 + AT_rich Low_complexity Low_complexity 1 21 0 1644 171 3 14 chr1 230937187 230937473 -11726880 - AluJb SINE Alu -14 298 16 2025 147 13 3 chr1 230937577 230937877 -11726476 + AluSg SINE Alu 2 304 -6 317 215 32 21 chr1 230938220 230938313 -11726040 - MER103 DNA DNA -65 101 8 5866 183 57 59 chr1 230938357 230938962 -11725391 - Looper DNA T2_type 0 1558 953 1672 160 0 67 chr1 230938962 230939275 -11725078 + AluJo SINE Alu 1 292 -20 5866 183 57 59 chr1 230939275 230940220 -11724133 - Looper DNA T2_type -605 953 12 280 82 16 82 chr1 230940359 230940420 -11723933 + FLAM_A SINE Alu 77 133 0 2010 161 0 3 chr1 230940422 230940713 -11723640 - AluJo SINE Alu -22 290 1 1777 101 72 43 chr1 230941069 230941347 -11723006 - AluSg SINE Alu -14 296 11 182 33 67 0 chr1 230941572 230941602 -11722751 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 825 184 0 27 chr1 230941628 230941775 -11722578 - AluJo SINE Alu -169 143 1 217 380 33 0 chr1 230941984 230942076 -11722277 - L2 LINE L2 -23 3249 3155 431 82 16 0 chr1 230942100 230942161 -11722192 + MER58A DNA MER1_type 26 87 -20 1520 109 17 1 chr1 230942851 230942880 -11721473 + L1PA16 LINE L1 5678 5705 -460 1247 114 40 5 chr1 230942880 230943081 -11721272 - L1PA16 LINE L1 -2 6164 5957 1520 109 17 1 chr1 230943081 230943305 -11721048 + L1PA16 LINE L1 5705 5940 -225 231 248 56 112 chr1 230945563 230945688 -11718665 - MER91B DNA MER1_type -33 157 40 197 292 0 0 chr1 230946582 230946647 -11717706 - L2 LINE L2 -211 3061 2997 279 390 28 0 chr1 230946767 230946908 -11717445 + MIR SINE MIR 47 191 -71 1575 194 24 56 chr1 230946948 230947324 -11717029 + MLT1A1 LTR MaLR 2 365 0 2535 66 0 3 chr1 230947378 230947680 -11716673 + AluY SINE Alu 1 301 -10 449 297 40 82 chr1 230948400 230948703 -11715650 + L2 LINE L2 2934 3223 -90 388 148 74 25 chr1 230949110 230949191 -11715162 - MLT1D LTR MaLR -335 170 86 2011 154 0 13 chr1 230949191 230949496 -11714857 - AluSx SINE Alu -11 301 1 755 190 0 7 chr1 230949528 230949665 -11714688 - MLT1A1 LTR MaLR 0 365 230 754 205 26 151 chr1 230949817 230950168 -11714185 + MER51C LTR ERV1 334 640 0 506 175 51 33 chr1 230950168 230950355 -11713998 - MLT1A2 LTR MaLR -127 247 10 289 200 15 15 chr1 230950360 230950425 -11713928 - MLT1D LTR MaLR -440 65 1 284 341 45 11 chr1 230951376 230951464 -11712889 - L2 LINE L2 -61 3211 3121 * 478 285 85 18 chr1 230951460 230951625 -11712728 - MIR SINE MIR -67 195 20 411 370 94 20 chr1 230951733 230952277 -11712076 - L2 LINE L2 -875 2439 1856 2022 135 0 20 chr1 230952402 230952705 -11711648 + AluSc SINE Alu 1 297 -12 369 0 0 0 chr1 230952705 230952746 -11711607 + (TA)n Simple_repeat Simple_repeat 1 41 0 1944 148 7 3 chr1 230952746 230953043 -11711310 + AluSx SINE Alu 2 299 -13 980 273 84 71 chr1 230953936 230955090 -11709263 + L1MEd LINE L1 543 1680 -4449 2352 94 7 0 chr1 230955090 230955388 -11708965 + AluSp SINE Alu 1 300 -13 2396 70 0 10 chr1 230955390 230955688 -11708665 + AluY SINE Alu 1 295 -16 980 273 84 71 chr1 230955688 230955700 -11708653 + L1MEd LINE L1 1680 1690 -4439 189 0 0 0 chr1 230955700 230955721 -11708632 + (TA)n Simple_repeat Simple_repeat 1 21 0 980 273 84 71 chr1 230955721 230956052 -11708301 + L1MEd LINE L1 1690 2015 -4114 1714 182 7 20 chr1 230956052 230956349 -11708004 + AluJb SINE Alu 1 293 -19 980 273 84 71 chr1 230956349 230956469 -11707884 + L1MEd LINE L1 2015 2132 -3997 1910 105 0 0 chr1 230956469 230956707 -11707646 + AluSq SINE Alu 1 238 -75 980 273 84 71 chr1 230956707 230956915 -11707438 + L1MEd LINE L1 2132 2421 -3708 1527 114 43 0 chr1 230956924 230957176 -11707177 - AluSg/x SINE Alu 0 325 65 431 265 176 10 chr1 230957941 230958145 -11706208 - Charlie5 DNA MER1_type -27 2585 2348 195 129 0 0 chr1 230959019 230959050 -11705303 + (TCC)n Simple_repeat Simple_repeat 3 33 0 613 255 148 5 chr1 230961630 230961826 -11702527 + MIR SINE MIR 36 259 -3 677 296 109 42 chr1 230961849 230962670 -11701683 - L2 LINE L2 -163 3109 2216 443 294 70 35 chr1 230964751 230964952 -11699401 + L3 LINE CR1 1369 1576 -1 2164 106 55 0 chr1 230964960 230965252 -11699101 + AluSg SINE Alu 1 308 -2 270 228 269 48 chr1 230966038 230966183 -11698170 - MIR SINE MIR -3 259 83 216 67 0 0 chr1 230966620 230966650 -11697703 + (TG)n Simple_repeat Simple_repeat 1 30 0 605 273 118 30 chr1 230966830 230966972 -11697381 + MLT1J1 LTR MaLR 12 140 -306 2248 114 3 0 chr1 230966972 230967269 -11697084 + AluSq SINE Alu 1 298 -15 605 273 118 30 chr1 230967269 230967423 -11696930 + MLT1J1 LTR MaLR 140 334 -112 359 333 67 0 chr1 230967809 230967974 -11696379 + MER117 DNA MER1_type 4 179 -18 195 338 6 88 chr1 230968019 230968179 -11696174 - MER5A DNA MER1_type -26 163 17 303 266 0 0 chr1 230968257 230968336 -11696017 + MIR SINE MIR 135 213 -49 444 322 75 11 chr1 230969837 230970011 -11694342 + MIR SINE MIR 35 219 -43 180 111 0 0 chr1 230970306 230970333 -11694020 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 805 200 6 18 chr1 230970406 230970571 -11693782 + AluJb SINE Alu 135 297 -15 218 318 50 60 chr1 230970773 230970974 -11693379 - MIR SINE MIR 0 262 64 215 311 29 29 chr1 230971939 230972042 -11692311 + L2 LINE L2 2951 3053 -219 186 43 0 0 chr1 230972053 230972076 -11692277 + (TC)n Simple_repeat Simple_repeat 2 24 0 196 200 0 0 chr1 230972207 230972242 -11692111 + L2 LINE L2 3271 3305 -8 278 289 72 80 chr1 230972412 230972872 -11691481 - LTR33 LTR ERVL -5 516 61 2385 94 0 3 chr1 230972975 230973273 -11691080 - AluSx SINE Alu -15 297 1 518 253 61 11 chr1 230973273 230973534 -11690819 + L1ME2 LINE L1 2848 3121 -3025 359 237 26 0 chr1 230973572 230973647 -11690706 + Tigger5 DNA MER2_type 2 78 -2245 413 171 0 12 chr1 230973647 230973729 -11690624 - Tigger5 DNA MER2_type -3 2320 2240 261 156 0 47 chr1 230973769 230973833 -11690520 + L1ME2 LINE L1 3186 3246 -2900 908 142 0 0 chr1 230973834 230973968 -11690385 + FLAM_C SINE Alu 6 139 -4 475 277 24 34 chr1 230973968 230974264 -11690089 + L1ME2 LINE L1 3238 3530 -2616 973 249 21 11 chr1 230974275 230974556 -11689797 + L1ME2 LINE L1 5655 5938 -232 3941 130 12 20 chr1 230974641 230975003 -11689350 - L1MC1 LINE L1 0 6333 5977 2205 114 0 0 chr1 230975003 230975302 -11689051 - AluY SINE Alu -12 299 1 3941 130 12 20 chr1 230975302 230975587 -11688766 - L1MC1 LINE L1 -356 5977 5691 296 242 12 68 chr1 230975631 230975792 -11688561 + L1ME2 LINE L1 5961 6112 -52 909 99 7 35 chr1 230975809 230975950 -11688403 - AluSp/q SINE Alu 0 313 177 393 302 54 37 chr1 230976413 230976655 -11687698 - Charlie8 DNA MER1_type -2151 266 21 247 371 119 28 chr1 230977767 230977910 -11686443 + L3 LINE CR1 1385 1540 -37 2202 120 3 0 chr1 230978236 230978535 -11685818 + AluSx SINE Alu 1 300 -12 285 301 24 24 chr1 230978633 230978716 -11685637 + L2 LINE L2 3227 3309 -4 359 279 300 11 chr1 230978764 230978954 -11685399 - MIR SINE MIR -1 261 17 365 276 114 8 chr1 230980553 230980676 -11683677 + MIR SINE MIR 55 190 -72 458 274 23 40 chr1 230981196 230981371 -11682982 - MER97a DNA MER1_type? -715 179 8 405 297 113 5 chr1 230981970 230982155 -11682198 - MIR SINE MIR -21 241 37 2466 89 0 3 chr1 230982266 230982570 -11681783 + AluSx SINE Alu 1 303 -9 202 237 0 53 chr1 230984007 230984083 -11680270 + (CA)n Simple_repeat Simple_repeat 1 72 0 26 0 0 0 chr1 230984996 230985022 -11679331 + AT_rich Low_complexity Low_complexity 1 26 0 201 74 0 0 chr1 230986644 230986671 -11677682 + (CA)n Simple_repeat Simple_repeat 2 28 0 932 150 0 0 chr1 230987879 230988012 -11676341 - FLAM_C SINE Alu 0 133 1 2076 139 0 10 chr1 230988044 230988345 -11676008 - AluSx SINE Alu -14 298 1 283 301 52 24 chr1 230988371 230988584 -11675769 - L1MC5 LINE L1 -32 7929 7711 2190 122 0 3 chr1 230988811 230989105 -11675248 + AluSx SINE Alu 1 293 -19 2066 143 13 0 chr1 230989218 230989526 -11674827 + AluSx SINE Alu 1 312 0 2314 106 3 0 chr1 230989606 230989899 -11674454 + AluSg SINE Alu 3 296 -14 2048 110 3 17 chr1 230989902 230990048 -11674305 + AluSx SINE Alu 1 147 -165 2459 64 0 3 chr1 230990048 230990343 -11674010 + AluY SINE Alu 1 294 -17 2048 110 3 17 chr1 230990343 230990497 -11673856 + AluSx SINE Alu 147 297 -15 281 373 67 16 chr1 230990653 230990846 -11673507 - MIR SINE MIR -6 256 54 182 347 63 11 chr1 230991383 230991478 -11672875 + MIR3 SINE MIR 55 154 -54 226 272 0 25 chr1 230992530 230992600 -11671753 + CT-rich Low_complexity Low_complexity 4 115 0 192 97 0 0 chr1 230993667 230993698 -11670655 + (TG)n Simple_repeat Simple_repeat 2 32 0 490 139 13 0 chr1 230993771 230993850 -11670503 - MADE1 DNA Mariner 0 80 1 288 0 0 0 chr1 230994170 230994202 -11670151 + (TG)n Simple_repeat Simple_repeat 2 33 0 489 139 13 0 chr1 230994272 230994351 -11670002 - MADE1 DNA Mariner 0 80 1 1226 260 140 28 chr1 230995585 230996128 -11668225 + L1MC4a LINE L1 5319 5922 -1886 306 276 10 10 chr1 230996143 230996241 -11668112 - L1MC/D LINE L1 -2365 5443 5346 1564 198 31 0 chr1 230998454 230998742 -11665611 + AluJo SINE Alu 1 297 -15 2335 100 7 0 chr1 230998742 230999050 -11665303 + AluSq SINE Alu 1 311 -2 252 77 0 0 chr1 230999050 230999089 -11665264 + (CA)n Simple_repeat Simple_repeat 2 40 0 2097 229 47 37 chr1 230999678 231000045 -11664308 - MLT1F LTR MaLR 0 542 167 2065 145 10 0 chr1 231000045 231000355 -11663998 - AluSq SINE Alu 0 313 1 2097 229 47 37 chr1 231000355 231000524 -11663829 - MLT1F LTR MaLR -375 167 1 2454 89 0 0 chr1 231000978 231001282 -11663071 + AluSx SINE Alu 1 304 -8 1219 62 0 0 chr1 231002011 231002156 -11662197 + AluY SINE Alu 155 299 -12 220 295 200 23 chr1 231002184 231002326 -11662027 + MIR SINE MIR 1 145 -63 1734 121 0 0 chr1 231002741 231002965 -11661388 + AluSq SINE Alu 1 224 -89 297 75 0 0 chr1 231002966 231003006 -11661347 + (GAA)n Simple_repeat Simple_repeat 2 41 0 448 138 59 33 chr1 231003031 231003183 -11661170 + GA-rich Low_complexity Low_complexity 5 160 0 285 350 47 30 chr1 231003695 231003929 -11660424 + L2 LINE L2 2340 2577 -737 785 264 29 0 chr1 231004230 231004404 -11659949 - MIR SINE MIR -54 208 30 228 301 78 29 chr1 231005166 231005269 -11659084 - MIR SINE MIR -55 207 100 354 264 47 18 chr1 231005398 231005539 -11658814 - MIR SINE MIR -65 143 11 570 328 32 28 chr1 231005808 231005966 -11658387 - MIR SINE MIR 0 262 101 1737 162 6 0 chr1 231005966 231006280 -11658073 + L1MA5A LINE L1 5982 6297 0 570 328 32 28 chr1 231006280 231006371 -11657982 - MIR SINE MIR -161 101 12 314 312 126 28 chr1 231006384 231006599 -11657754 + MIR SINE MIR 6 241 -21 2149 108 0 21 chr1 231006705 231007019 -11657334 - AluSx SINE Alu 0 308 1 22 103 0 0 chr1 231007150 231007228 -11657125 + AT_rich Low_complexity Low_complexity 1 78 0 479 301 97 102 chr1 231007753 231008013 -11656340 + L2 LINE L2 2933 3192 -80 2308 103 0 10 chr1 231008013 231008323 -11656030 - AluSg SINE Alu -1 309 3 479 301 97 102 chr1 231008323 231008404 -11655949 + L2 LINE L2 3192 3272 0 202 362 14 0 chr1 231008790 231008859 -11655494 - L3 LINE CR1 -12 1565 1496 353 333 55 29 chr1 231009266 231009575 -11654778 + L1MC5 LINE L1 7609 7925 -36 200 329 40 0 chr1 231010793 231010869 -11653484 + MIR SINE MIR 20 98 -164 2141 94 3 88 chr1 231011002 231011330 -11653023 - AluSx SINE Alu -12 300 1 209 295 0 0 chr1 231011330 231011391 -11652962 + MIR3 SINE MIR 128 188 -20 260 226 0 32 chr1 231012173 231012235 -11652118 - MER94 DNA DNA -70 64 5 2388 94 0 0 chr1 231012975 231013272 -11651081 + AluSx SINE Alu 1 297 -15 1070 219 55 0 chr1 231013347 231013603 -11650750 + L1PB4 LINE L1 5886 6155 -1 2138 128 0 10 chr1 231013999 231014305 -11650048 + AluSx SINE Alu 1 303 -9 644 248 14 51 chr1 231014585 231014801 -11649552 - MIR SINE MIR -21 241 36 1869 234 63 10 chr1 231014930 231014992 -11649361 - Charlie1b DNA MER1_type -2238 523 466 2027 163 0 3 chr1 231014992 231015292 -11649061 + AluJo SINE Alu 1 299 -13 1869 234 63 10 chr1 231015292 231015724 -11648629 - Charlie1b DNA MER1_type -2295 466 3 1650 81 0 0 chr1 231015738 231015936 -11648417 - AluSg/x SINE Alu -7 305 108 265 315 54 0 chr1 231015948 231016059 -11648294 - MER103 DNA DNA -48 118 2 277 249 91 54 chr1 231016262 231016397 -11647956 + MIR SINE MIR 9 156 -61 337 292 40 74 chr1 231016506 231016804 -11647549 + L2 LINE L2 2887 3174 -98 367 293 50 0 chr1 231017876 231017975 -11646378 - L2 LINE L2 0 3272 3169 423 307 129 44 chr1 231018210 231018620 -11645733 - L2 LINE L2 -337 2977 2533 350 350 14 0 chr1 231019180 231019323 -11645030 + MLT1H LTR MaLR 107 251 -298 1707 190 11 0 chr1 231021922 231022206 -11642147 + AluJo SINE Alu 5 291 -21 2540 76 31 6 chr1 231022437 231022792 -11641561 + THE1B LTR MaLR 1 364 0 180 300 14 29 chr1 231023045 231023115 -11641238 - MIR SINE MIR -66 196 128 390 271 30 53 chr1 231023635 231023768 -11640585 - MIR3 SINE MIR -7 201 72 324 260 24 49 chr1 231024167 231024290 -11640063 + L1ME3 LINE L1 5905 6024 -138 2080 102 4 0 chr1 231024290 231024556 -11639797 - AluSg SINE Alu -7 303 37 539 107 60 0 chr1 231024564 231024648 -11639705 - AluSg1 SINE Alu -219 90 2 695 214 28 0 chr1 231024650 231024795 -11639558 + L1ME3 LINE L1 6013 6161 -1 238 304 0 51 chr1 231024812 231024891 -11639462 + L3 LINE CR1 1401 1475 -102 382 265 20 107 chr1 231026126 231026322 -11638031 - MIR SINE MIR -10 252 74 383 223 200 31 chr1 231026343 231026473 -11637880 + L2 LINE L2 3159 3310 -3 184 254 55 0 chr1 231026475 231026530 -11637823 - MIR SINE MIR -190 72 15 238 248 165 9 chr1 231026593 231026702 -11637651 + L3b LINE CR1 1340 1465 -118 403 255 9 19 chr1 231027180 231027286 -11637067 - MER5A DNA MER1_type -83 106 2 320 233 280 13 chr1 231027405 231027605 -11636748 - L2 LINE L2 -18 3254 3004 230 0 33 0 chr1 231028167 231028197 -11636156 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 880 211 14 14 chr1 231028959 231029131 -11635222 + L1MB3 LINE L1 5968 6139 -44 2336 70 0 7 chr1 231029131 231029415 -11634938 + AluY SINE Alu 1 282 -29 321 47 0 0 chr1 231029415 231029458 -11634895 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 880 211 14 14 chr1 231029458 231029497 -11634856 + L1MB3 LINE L1 6137 6180 -3 1665 172 65 17 chr1 231029616 231029906 -11634447 + AluJo SINE Alu 1 304 -8 469 266 79 1 chr1 231030654 231030821 -11633532 - MIR SINE MIR -63 145 18 959 147 57 0 chr1 231031709 231031886 -11632467 - MER5A DNA MER1_type 0 189 3 428 292 129 25 chr1 231031937 231032139 -11632214 - MIR SINE MIR -3 259 37 407 258 24 51 chr1 231032574 231032755 -11631598 - MIR SINE MIR -55 153 19 1304 112 0 0 chr1 231035233 231035412 -11628941 - AluY SINE Alu 0 311 133 2532 236 65 40 chr1 231035418 231036304 -11628049 + Zaphod DNA AcHobo 85 993 -3038 1237 246 82 2 chr1 231036299 231036702 -11627651 + Zaphod DNA AcHobo 3595 4029 -2 * 224 267 22 56 chr1 231036831 231036921 -11627432 + L2 LINE L2 3217 3303 -10 1979 157 3 16 chr1 231038240 231038558 -11625795 + 7SLRNA srpRNA srpRNA 2 315 -5 1488 216 38 18 chr1 231038803 231039202 -11625151 - MER97a DNA MER1_type? -2 892 486 353 253 13 133 chr1 231039301 231039459 -11624894 - L1MC4a LINE L1 -1894 5914 5776 1164 291 40 32 chr1 231039466 231039936 -11624417 - MER97c DNA MER1_type? -616 474 1 2173 99 7 14 chr1 231040136 231040429 -11623924 - AluY SINE Alu -20 291 1 499 298 22 33 chr1 231040498 231040679 -11623674 - MIR SINE MIR -48 214 36 195 365 0 0 chr1 231041625 231041688 -11622665 - MIR SINE MIR -180 82 20 280 329 0 0 chr1 231041865 231041950 -11622403 - MIR SINE MIR -30 232 148 225 0 0 0 chr1 231042214 231042239 -11622114 + (A)n Simple_repeat Simple_repeat 1 25 0 186 324 206 17 chr1 231043397 231043752 -11620601 + L2 LINE L2 2337 2758 -556 629 246 81 34 chr1 231044049 231044103 -11620250 + MER112 DNA MER1_type 1 51 -209 2055 164 0 0 chr1 231044103 231044407 -11619946 - AluJo SINE Alu -6 306 3 629 246 81 34 chr1 231044407 231044588 -11619765 + MER112 DNA MER1_type 51 247 -13 194 268 0 36 chr1 231044680 231044736 -11619617 + L2 LINE L2 3149 3202 -70 3880 109 2 5 chr1 231045127 231045704 -11618649 + L1PA10 LINE L1 5594 6168 0 282 273 133 16 chr1 231046373 231046501 -11617852 + MIR SINE MIR 118 260 -2 22 0 0 0 chr1 231046606 231046628 -11617725 + AT_rich Low_complexity Low_complexity 1 22 0 2649 111 19 32 chr1 231046634 231047066 -11617287 + MSTC LTR MaLR 3 428 0 774 245 171 60 chr1 231048047 231048480 -11615873 + MLT1J LTR MaLR 11 491 -20 399 341 78 28 chr1 231048768 231049023 -11615330 - L2 LINE L2 0 3272 3005 260 259 135 40 chr1 231049371 231049659 -11614694 + MLT2E LTR ERVL 230 628 0 581 265 176 10 chr1 231049723 231050025 -11614328 + L1MC4 LINE L1 7691 8042 0 2138 123 3 10 chr1 231050602 231050902 -11613451 + AluSx SINE Alu 1 298 -14 324 120 0 0 chr1 231050957 231051007 -11613346 + (A)n Simple_repeat Simple_repeat 1 50 0 1172 229 41 41 chr1 231051199 231051220 -11613133 - MLT1A2 LTR MaLR 0 467 447 2359 144 62 0 chr1 231051220 231051623 -11612730 + MSTC LTR MaLR 1 428 0 1172 229 41 41 chr1 231051623 231051969 -11612384 - MLT1A2 LTR MaLR -20 447 4 1446 71 0 0 chr1 231053931 231054100 -11610253 - AluSq SINE Alu -15 298 130 216 0 0 0 chr1 231254242 231254266 -11410087 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1685 189 0 0 chr1 231254268 231254548 -11409805 - AluJb SINE Alu -32 280 1 359 241 219 75 chr1 231255626 231255818 -11408535 - MIR SINE MIR 0 262 31 1839 184 7 0 chr1 231255818 231256122 -11408231 - AluJb SINE Alu -6 306 1 359 241 219 75 chr1 231256122 231256157 -11408196 - MIR SINE MIR -231 31 2 2184 104 0 17 chr1 231256159 231256458 -11407895 - AluSg SINE Alu -16 294 1 2342 84 0 7 chr1 231256464 231256763 -11407590 - AluSq SINE Alu -16 297 1 397 330 5 48 chr1 231256896 231257084 -11407269 - MIR SINE MIR -80 182 3 201 315 102 37 chr1 231257351 231257459 -11406894 - MIR SINE MIR -75 133 19 2302 67 3 24 chr1 231257535 231257832 -11406521 - AluY SINE Alu -20 291 1 291 255 88 0 chr1 231258579 231258681 -11405672 - L1MA9 LINE L1 -22 6290 6180 693 161 23 39 chr1 231258721 231258851 -11405502 - FLAM_C SINE Alu -5 128 1 279 196 128 10 chr1 231259472 231259574 -11404779 + MER103 DNA DNA 2 115 -51 1662 196 0 13 chr1 231259994 231260300 -11404053 - AluJb SINE Alu -9 303 2 551 331 27 16 chr1 231261131 231261315 -11403038 - MIR3 SINE MIR -13 195 10 191 316 18 0 chr1 231261782 231261839 -11402514 + MER5A DNA MER1_type 132 189 0 277 283 0 0 chr1 231262046 231262106 -11402247 - MER91A DNA MER1_type 0 190 131 400 379 28 17 chr1 231262138 231262315 -11402038 - MER91A DNA MER1_type -17 179 1 257 403 84 8 chr1 231262630 231262749 -11401604 - L2 LINE L2 -18 3254 3127 729 227 22 54 chr1 231263073 231263182 -11401171 + MIR SINE MIR 12 115 -147 2067 109 3 3 chr1 231263182 231263489 -11400864 - AluSx SINE Alu 0 307 1 729 227 22 54 chr1 231263489 231263563 -11400790 + MIR SINE MIR 115 190 -72 2089 142 7 10 chr1 231263758 231264068 -11400285 + AluSx SINE Alu 1 309 -3 603 175 56 24 chr1 231264523 231264649 -11399704 + FRAM SINE Alu 25 154 -22 798 244 65 20 chr1 231265181 231265348 -11399005 + Charlie1a DNA MER1_type 3 186 -2575 2335 88 0 0 chr1 231265348 231265643 -11398710 - AluSx SINE Alu -13 299 5 798 244 65 20 chr1 231265643 231265721 -11398632 + Charlie1a DNA MER1_type 186 259 -1196 283 180 0 0 chr1 231266155 231266216 -11398137 - L1MB2 LINE L1 -42 6129 6069 426 20 0 0 chr1 231266269 231266320 -11398033 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 332 232 18 104 chr1 231266644 231266864 -11397489 - L1ME LINE L1 -706 5458 5258 29 28 0 0 chr1 231267038 231267074 -11397279 + AT_rich Low_complexity Low_complexity 1 36 0 447 238 63 0 chr1 231267917 231268043 -11396310 - L1MA9 LINE L1 0 6312 6179 1143 143 18 58 chr1 231268073 231268297 -11396056 + MER20 DNA MER1_type 4 218 -1 492 318 116 8 chr1 231269223 231269465 -11394888 + L2 LINE L2 3046 3313 0 437 218 100 0 chr1 231269468 231269578 -11394775 - MIR SINE MIR -22 240 120 204 132 33 66 chr1 231269830 231269921 -11394432 + (TTA)n Simple_repeat Simple_repeat 2 89 0 2114 84 0 48 chr1 231271393 231271585 -11392768 - AluY SINE Alu 0 311 153 2469 64 0 0 chr1 231271585 231271883 -11392470 - AluSc SINE Alu -11 298 1 2114 84 0 48 chr1 231271883 231272029 -11392324 - AluY SINE Alu -158 153 1 2193 106 0 0 chr1 231272185 231272492 -11391861 - AluSx SINE Alu 0 307 1 1246 132 11 6 chr1 231273197 231273379 -11390974 + AluJo SINE Alu 5 187 -125 1243 98 0 0 chr1 231273381 231273544 -11390809 - AluY SINE Alu -148 163 1 309 229 9 101 chr1 231273589 231273698 -11390655 + L1M LINE L1 5283 5381 -2427 826 239 35 87 chr1 231273828 231274310 -11390043 - L1MC5 LINE L1 -775 7186 6730 512 220 0 1 chr1 231274352 231274479 -11389874 - L1MC5 LINE L1 -1214 6747 6639 682 111 0 17 chr1 231274483 231274600 -11389753 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 1777 158 48 7 chr1 231274627 231274918 -11389435 + AluJb SINE Alu 1 303 -9 22 35 0 0 chr1 231274977 231275006 -11389347 + AT_rich Low_complexity Low_complexity 1 29 0 2250 96 0 0 chr1 231275564 231275857 -11388496 - AluSg SINE Alu -17 293 1 2114 123 0 20 chr1 231275857 231276159 -11388194 - AluSx SINE Alu -16 296 1 63 14 0 0 chr1 231276335 231276405 -11387948 + AT_rich Low_complexity Low_complexity 1 70 0 1451 95 0 68 chr1 231276573 231276795 -11387558 + AluSq SINE Alu 1 207 -106 947 98 0 0 chr1 231276953 231277075 -11387278 + AluSg/x SINE Alu 178 299 -11 22 0 0 0 chr1 231277275 231277297 -11387056 + AT_rich Low_complexity Low_complexity 1 22 0 243 235 176 0 chr1 231278223 231278308 -11386045 + MIR SINE MIR 149 248 -14 2188 116 0 7 chr1 231278754 231279055 -11385298 - AluSx SINE Alu -13 299 1 238 236 45 34 chr1 231279532 231279621 -11384732 - L1MC5 LINE L1 -1900 5908 5819 926 126 0 15 chr1 231279699 231279834 -11384519 - AluSq/x SINE Alu -180 133 1 2114 93 0 40 chr1 231279943 231280272 -11384081 - AluY SINE Alu 0 317 1 1343 211 20 30 chr1 231280274 231280572 -11383781 - AluJo SINE Alu -17 295 1 924 249 46 63 chr1 231280708 231280939 -11383414 - L1MC5 LINE L1 -1981 5827 5604 1539 133 47 0 chr1 231280939 231281173 -11383180 - AluSx SINE Alu -15 297 53 924 249 46 63 chr1 231281173 231281335 -11383018 - L1MC5 LINE L1 -2204 5604 5441 824 200 0 27 chr1 231281340 231281490 -11382863 - AluSg/x SINE Alu -17 295 150 275 217 33 22 chr1 231281539 231281631 -11382722 - L1MC5 LINE L1 -2401 5407 5315 1698 178 10 10 chr1 231281645 231281943 -11382410 - AluJb SINE Alu -14 298 1 244 264 88 40 chr1 231282257 231282382 -11381971 - L1MC/D LINE L1 -2103 5705 5575 243 310 80 5 chr1 231282727 231282927 -11381426 + L1MC4a LINE L1 5715 5929 -1879 2026 128 10 17 chr1 231283066 231283362 -11380991 - AluSx SINE Alu -18 294 1 2098 123 3 0 chr1 231284116 231284409 -11379944 - AluSx SINE Alu -18 294 1 442 280 82 43 chr1 231284469 231284676 -11379677 + L2 LINE L2 2550 2764 -550 232 341 103 58 chr1 231284825 231285048 -11379305 + L2 LINE L2 3026 3258 -14 1685 158 48 7 chr1 231285055 231285348 -11379005 + AluJb SINE Alu 3 312 0 1777 234 65 39 chr1 231285524 231286181 -11378172 - L1MC5 LINE L1 -1725 4421 3742 1419 169 54 61 chr1 231286181 231286476 -11377877 + AluJo SINE Alu 1 293 -19 1777 234 65 39 chr1 231286476 231286520 -11377833 - L1MC5 LINE L1 -2404 3742 3701 803 167 0 0 chr1 231286520 231286640 -11377713 - FLAM_C SINE Alu -23 120 1 253 210 122 0 chr1 231286642 231286716 -11377637 - L1MC5 LINE L1 -2448 3698 3616 635 233 0 0 chr1 231286725 231286845 -11377508 - FLAM_A SINE Alu -13 120 1 1272 117 5 32 chr1 231287013 231287201 -11377152 - AluSg/x SINE Alu -22 290 108 1874 111 10 40 chr1 231287550 231287847 -11376506 + AluSx SINE Alu 1 288 -24 30 0 0 0 chr1 231287962 231287992 -11376361 + AT_rich Low_complexity Low_complexity 1 30 0 338 201 134 22 chr1 231288022 231288156 -11376197 - L1ME4a LINE L1 -4 6117 5969 2213 55 29 0 chr1 231288511 231288811 -11375542 + AluY SINE Alu 1 308 0 1657 167 26 26 chr1 231289847 231290029 -11374324 - AluJb SINE Alu 0 312 128 2170 118 0 0 chr1 231290029 231290318 -11374035 - AluSx SINE Alu -23 289 1 1657 167 26 26 chr1 231290318 231290447 -11373906 - AluJb SINE Alu -183 129 1 239 307 0 0 chr1 231291170 231291245 -11373108 + MLT1K LTR MaLR 2 76 -512 26 30 0 0 chr1 231291340 231291373 -11372980 + AT_rich Low_complexity Low_complexity 1 33 0 499 44 44 0 chr1 231291538 231291606 -11372747 + AluY SINE Alu 91 161 -150 1487 78 16 0 chr1 231291606 231291826 -11372527 + AluY SINE Alu 90 312 0 1349 231 70 62 chr1 231292090 231292261 -11372092 + L1MC4 LINE L1 6459 6627 -1415 186 43 0 0 chr1 231292261 231292284 -11372069 + (CA)n Simple_repeat Simple_repeat 2 24 0 1349 231 70 62 chr1 231292284 231292420 -11371933 + L1MC4 LINE L1 6627 6761 -1281 1759 106 45 8 chr1 231292420 231292666 -11371687 - AluSg SINE Alu -11 299 45 1349 231 70 62 chr1 231292666 231292903 -11371450 + L1MC4 LINE L1 6761 7008 -1034 253 192 128 0 chr1 231292927 231293005 -11371348 + L1ME2 LINE L1 6076 6163 -1 580 262 90 25 chr1 231293009 231293253 -11371100 + L1MC4 LINE L1 7015 7274 -768 264 221 0 0 chr1 231293524 231293592 -11370761 - L1MC4 LINE L1 -1339 6703 6636 230 250 18 45 chr1 231293741 231293853 -11370500 + (TTTA)n Simple_repeat Simple_repeat 2 110 0 2374 87 0 0 chr1 231293896 231294207 -11370146 + AluY SINE Alu 1 311 0 1387 165 29 8 chr1 231294986 231295229 -11369124 + AluJo SINE Alu 22 269 -43 2252 122 0 0 chr1 231295242 231295546 -11368807 + AluSq SINE Alu 1 304 -9 2061 118 3 3 chr1 231295561 231295878 -11368475 + AluSx SINE Alu 1 317 0 245 345 78 0 chr1 231296198 231296314 -11368039 + L2 LINE L2 3138 3262 -10 313 338 29 15 chr1 231296429 231296565 -11367788 + MIR SINE MIR 20 157 -105 35 54 0 0 chr1 231296582 231296638 -11367715 + AT_rich Low_complexity Low_complexity 1 56 0 1900 102 4 26 chr1 231296974 231297238 -11367115 - AluSx SINE Alu -54 258 1 641 153 110 31 chr1 231297338 231297501 -11366852 - MER104 DNA MER2_type 0 180 5 488 67 0 122 chr1 231297936 231297986 -11366367 - MADE1 DNA Mariner -1 79 43 1698 129 42 42 chr1 231297986 231298297 -11366056 + AluSx SINE Alu 2 312 0 488 67 0 122 chr1 231298297 231298336 -11366017 - MADE1 DNA Mariner -37 43 1 21 57 0 0 chr1 231298490 231298525 -11365828 + AT_rich Low_complexity Low_complexity 1 35 0 204 284 159 8 chr1 231298643 231298745 -11365608 + MIR SINE MIR 60 160 -61 270 0 0 0 chr1 231298888 231298918 -11365435 + (TG)n Simple_repeat Simple_repeat 1 30 0 1723 169 17 7 chr1 231299749 231300044 -11364309 + AluJb SINE Alu 1 298 -14 22 35 0 0 chr1 231300085 231300114 -11364239 + AT_rich Low_complexity Low_complexity 1 29 0 1062 148 0 19 chr1 231300416 231300578 -11363775 + FRAM SINE Alu 7 165 -11 2199 103 3 7 chr1 231300610 231300911 -11363442 + AluSx SINE Alu 1 300 -12 765 226 35 15 chr1 231300947 231301146 -11363207 + AluJb SINE Alu 89 291 -21 235 240 55 55 chr1 231301315 231301371 -11362982 - Charlie7 DNA MER1_type -2070 542 487 2104 217 96 17 chr1 231301371 231301892 -11362461 - MER68 LTR ERV1 0 562 1 235 240 55 55 chr1 231301892 231301981 -11362372 - Charlie7 DNA MER1_type -2124 488 397 666 201 0 71 chr1 231302247 231302416 -11361937 - MER5A DNA MER1_type 0 189 33 621 164 94 31 chr1 231302427 231302555 -11361798 + AluJb SINE Alu 158 293 -19 292 189 0 0 chr1 231302555 231302608 -11361745 - MER5A DNA MER1_type -135 54 2 257 349 0 0 chr1 231302693 231302776 -11361577 - Charlie7 DNA MER1_type -2312 300 218 483 299 86 47 chr1 231303320 231303722 -11360631 + ERVL LTR ERVL 1755 2209 -3484 387 0 0 0 chr1 231303840 231303883 -11360470 + (CA)n Simple_repeat Simple_repeat 2 44 0 2254 75 10 0 chr1 231303926 231304220 -11360133 - AluSx SINE Alu -15 297 1 30 59 0 0 chr1 231304843 231304894 -11359459 + AT_rich Low_complexity Low_complexity 1 51 0 24 53 0 0 chr1 231304976 231305014 -11359339 + AT_rich Low_complexity Low_complexity 1 38 0 948 242 27 0 chr1 231305978 231306197 -11358156 + MIR SINE MIR 23 247 -15 21 36 0 0 chr1 231306493 231306521 -11357832 + AT_rich Low_complexity Low_complexity 1 28 0 525 146 45 0 chr1 231307891 231308002 -11356351 - L1MB7 LINE L1 -26 6152 6041 363 219 69 176 chr1 231308751 231309070 -11355283 - L2 LINE L2 -1 3312 3028 253 233 55 14 chr1 231309046 231309119 -11355234 - L2 LINE L2 -1713 1601 1526 * 2291 62 0 0 chr1 231309664 231309938 -11354415 - AluSx SINE Alu -15 297 24 2211 96 3 0 chr1 231310111 231310403 -11353950 + AluSc SINE Alu 1 293 -16 2146 94 44 7 chr1 231312659 231312956 -11351397 + AluSx SINE Alu 5 312 0 1570 221 3 0 chr1 231313054 231313353 -11351000 - AluJo SINE Alu -12 300 1 2240 89 26 0 chr1 231313754 231314056 -11350297 - AluSp SINE Alu -1 312 3 232 318 61 0 chr1 231314364 231314430 -11349923 + L2 LINE L2 3186 3255 -17 30 27 0 0 chr1 231314462 231314499 -11349854 + AT_rich Low_complexity Low_complexity 1 37 0 302 200 13 13 chr1 231314569 231314644 -11349709 - MIR SINE MIR -94 168 94 2277 113 0 3 chr1 231314754 231315065 -11349288 + AluSx SINE Alu 1 310 -2 252 0 0 0 chr1 231315065 231315093 -11349260 + (TA)n Simple_repeat Simple_repeat 2 29 0 2179 99 3 0 chr1 231315114 231315397 -11348956 + AluSx SINE Alu 1 284 -28 297 0 0 0 chr1 231315397 231315430 -11348923 + (CA)n Simple_repeat Simple_repeat 2 34 0 960 139 90 12 chr1 231315828 231315994 -11348359 + AluJb SINE Alu 134 312 0 184 266 51 38 chr1 231316019 231316098 -11348255 - MIR SINE MIR -3 259 180 656 312 157 40 chr1 231316510 231317090 -11347263 + L2 LINE L2 2187 2834 -480 2229 105 3 0 chr1 231317828 231318123 -11346230 - AluSg SINE Alu -14 296 1 1499 182 62 7 chr1 231318464 231318755 -11345598 - AluJb SINE Alu -3 309 3 1989 121 0 7 chr1 231318786 231319097 -11345256 + AluSg SINE Alu 1 309 0 371 245 20 10 chr1 231319176 231319278 -11345075 + L1MA9 LINE L1 5985 6087 -225 986 159 62 17 chr1 231319287 231319463 -11344890 - AluJb SINE Alu -128 184 1 2246 109 0 0 chr1 231319463 231319785 -11344568 - AluSq SINE Alu 0 322 1 1381 179 13 62 chr1 231319790 231320097 -11344256 - AluJo SINE Alu -20 292 1 2071 134 0 3 chr1 231320135 231320443 -11343910 + AluSx SINE Alu 1 307 0 22 0 0 0 chr1 231320710 231320732 -11343621 + AT_rich Low_complexity Low_complexity 1 22 0 2013 130 17 3 chr1 231320982 231321283 -11343070 - AluSx SINE Alu -7 305 1 273 98 0 0 chr1 231321288 231321329 -11343024 + (T)n Simple_repeat Simple_repeat 1 41 0 1864 134 29 0 chr1 231321471 231321789 -11342564 - AluSx SINE Alu 0 326 1 396 216 144 24 chr1 231322317 231322442 -11341911 + MIR SINE MIR 121 260 -2 183 220 0 0 chr1 231322624 231322674 -11341679 + GA-rich Low_complexity Low_complexity 1 50 0 2485 71 0 0 chr1 231322979 231323288 -11341065 + AluY SINE Alu 1 309 -2 1513 164 0 70 chr1 231323307 231323637 -11340716 + AluJb SINE Alu 1 307 -5 2072 113 0 29 chr1 231323784 231324093 -11340260 + AluSg SINE Alu 1 300 -10 234 345 11 118 chr1 231324762 231324958 -11339395 + L2 LINE L2 2933 3076 -196 2141 104 0 41 chr1 231324958 231325100 -11339253 + AluSx SINE Alu 4 150 -162 2393 61 0 10 chr1 231325100 231325396 -11338957 + AluY SINE Alu 1 293 -18 2141 104 0 41 chr1 231325396 231325571 -11338782 + AluSx SINE Alu 150 308 -4 234 345 11 118 chr1 231325571 231325730 -11338623 + L2 LINE L2 3076 3250 -22 298 155 86 0 chr1 231326358 231326416 -11337937 + L2 LINE L2 3209 3271 -1 228 35 0 0 chr1 231326842 231326871 -11337482 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 309 298 12 12 chr1 231327305 231327389 -11336964 + L2 LINE L2 3158 3241 -31 25 0 0 0 chr1 231328405 231328430 -11335923 + AT_rich Low_complexity Low_complexity 1 25 0 327 255 106 0 chr1 231328489 231328583 -11335770 - L1MC4 LINE L1 -1339 6703 6600 1955 151 0 16 chr1 231328941 231329245 -11335108 + AluSx SINE Alu 1 299 -13 210 325 128 34 chr1 231329354 231329471 -11334882 + L2 LINE L2 3136 3263 -9 1775 172 12 38 chr1 231329712 231330032 -11334321 + AluJo SINE Alu 1 312 0 545 293 49 61 chr1 231330572 231330723 -11333630 + MIR SINE MIR 3 151 -111 2230 121 7 0 chr1 231330723 231331030 -11333323 + AluSx SINE Alu 1 309 -3 545 293 49 61 chr1 231331030 231331141 -11333212 + MIR SINE MIR 151 262 0 1993 140 7 3 chr1 231332756 231333056 -11331297 + AluSx SINE Alu 1 301 -11 1892 122 36 16 chr1 231333777 231334081 -11330272 + MER44D DNA MER2_type 30 609 0 268 236 14 28 chr1 231334227 231334299 -11330054 + MIR SINE MIR 176 246 -16 333 114 25 38 chr1 231334447 231334526 -11329827 + (TATG)n Simple_repeat Simple_repeat 2 79 0 25 51 0 0 chr1 231335114 231335153 -11329200 + AT_rich Low_complexity Low_complexity 1 39 0 27 81 0 0 chr1 231335212 231335274 -11329079 + AT_rich Low_complexity Low_complexity 1 62 0 2120 98 21 3 chr1 231335278 231335564 -11328789 + AluSx SINE Alu 1 291 -21 234 254 0 0 chr1 231335570 231335633 -11328720 + L1MC4 LINE L1 6648 6710 -1332 27 0 0 0 chr1 231336001 231336028 -11328325 + AT_rich Low_complexity Low_complexity 1 27 0 1660 173 3 25 chr1 231336036 231336320 -11328033 + AluJo SINE Alu 5 282 -30 297 0 0 0 chr1 231336340 231336373 -11327980 + (CA)n Simple_repeat Simple_repeat 2 34 0 29 98 0 0 chr1 231336392 231336484 -11327869 + AT_rich Low_complexity Low_complexity 1 92 0 2286 81 7 19 chr1 231336776 231337083 -11327270 + AluSq SINE Alu 1 303 -10 313 157 0 0 chr1 231337413 231337464 -11326889 + Alu SINE Alu 248 298 -3 339 157 0 0 chr1 231337908 231337978 -11326375 + GA-rich Low_complexity Low_complexity 2 71 0 1745 148 46 0 chr1 231339647 231339931 -11324422 - AluSx SINE Alu -1 311 15 896 161 66 0 chr1 231340187 231340324 -11324029 + FRAM SINE Alu 1 146 -30 276 100 0 0 chr1 231340552 231340592 -11323761 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2096 98 11 0 chr1 231340592 231340869 -11323484 - AluSp SINE Alu -33 280 1 1740 173 11 0 chr1 231341697 231341975 -11322378 - AluJo SINE Alu -31 281 1 2153 128 0 3 chr1 231342056 231342369 -11321984 + AluSx SINE Alu 1 312 0 1890 155 13 0 chr1 231342425 231342728 -11321625 - AluSq SINE Alu -6 307 1 2266 80 0 43 chr1 231343104 231343430 -11320923 + AluSp SINE Alu 1 312 -1 21 82 0 0 chr1 231344021 231344070 -11320283 + AT_rich Low_complexity Low_complexity 1 49 0 270 293 0 61 chr1 231344199 231344281 -11320072 - L2 LINE L2 0 3272 3196 2366 254 125 42 chr1 231344325 231345386 -11318967 + L2 LINE L2 954 2102 -1212 1265 181 198 43 chr1 231345936 231346470 -11317883 - L1M3 LINE L1 -559 5621 4969 2071 125 0 0 chr1 231347574 231347878 -11316475 - AluSg SINE Alu 0 305 2 403 321 15 23 chr1 231348887 231349018 -11315335 + L2 LINE L2 3139 3268 -4 2269 108 0 0 chr1 231349071 231349366 -11314987 + AluSx SINE Alu 1 295 -17 298 107 36 0 chr1 231349871 231349927 -11314426 + (TA)n Simple_repeat Simple_repeat 1 58 0 216 0 0 0 chr1 231350002 231350026 -11314327 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1537 132 0 0 chr1 231350030 231350242 -11314111 - AluSg/x SINE Alu -23 289 78 1632 186 27 0 chr1 231350298 231350593 -11313760 + AluJb SINE Alu 2 304 -8 2075 129 0 10 chr1 231350748 231351059 -11313294 - AluSg SINE Alu -2 308 1 2113 87 3 27 chr1 231351449 231351748 -11312605 - AluSg SINE Alu -18 292 1 949 118 0 0 chr1 231351748 231351884 -11312469 - AluSq/x SINE Alu -176 136 1 2401 80 3 0 chr1 231352802 231353103 -11311250 - AluSx SINE Alu -10 302 1 220 330 122 35 chr1 231354238 231354353 -11310000 - MIR SINE MIR -63 145 21 2251 103 3 3 chr1 231355039 231355350 -11309003 - AluY SINE Alu 0 311 1 463 321 36 26 chr1 231355532 231355725 -11308628 + MIR3 SINE MIR 9 203 -5 2435 81 3 0 chr1 231356313 231356610 -11307743 - AluSx SINE Alu -14 298 1 391 98 0 0 chr1 231356742 231356793 -11307560 + MER105 DNA DNA 82 132 -72 2446 69 7 0 chr1 231357078 231357382 -11306971 - AluSp SINE Alu -7 306 1 1163 163 102 5 chr1 231358036 231358251 -11306102 - MER46A DNA MER2_type 0 236 1 1632 192 3 0 chr1 231358517 231358803 -11305550 - AluJb SINE Alu -23 289 3 2207 77 42 3 chr1 231358812 231359097 -11305256 - AluY SINE Alu -15 296 1 24 32 0 0 chr1 231359426 231359457 -11304896 + AT_rich Low_complexity Low_complexity 1 31 0 1888 145 23 16 chr1 231359826 231360130 -11304223 - AluJb SINE Alu -6 306 1 2269 106 0 22 chr1 231360365 231360677 -11303676 + AluSq SINE Alu 1 305 -8 1033 238 99 40 chr1 231361020 231361423 -11302930 - HAL1 LINE L1 -628 1879 1453 2115 134 0 0 chr1 231361450 231361755 -11302598 - AluSx SINE Alu -7 305 1 1476 279 97 74 chr1 231361872 231362041 -11302312 - HAL1 LINE L1 -1113 1394 1230 1011 203 122 66 chr1 231362041 231362312 -11302041 - AluJo SINE Alu -15 287 2 1476 279 97 74 chr1 231362312 231362496 -11301857 - HAL1 LINE L1 -1277 1230 1052 2363 95 0 3 chr1 231362496 231362802 -11301551 - AluSg SINE Alu -5 305 1 1476 279 97 74 chr1 231362802 231363735 -11300618 - HAL1 LINE L1 -1455 1052 77 231 197 16 33 chr1 231363735 231363796 -11300557 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 183 80 0 0 chr1 231364193 231364218 -11300135 + (TATATG)n Simple_repeat Simple_repeat 3 27 0 2290 104 0 10 chr1 231364537 231364846 -11299507 + AluSp SINE Alu 1 306 -7 815 248 231 40 chr1 231364866 231364925 -11299428 + HAL1 LINE L1 1016 1062 -1445 1675 132 110 7 chr1 231364925 231365198 -11299155 + AluSg SINE Alu 1 301 -9 815 248 231 40 chr1 231365198 231365218 -11299135 + HAL1 LINE L1 1062 1077 -1430 2091 113 28 7 chr1 231365218 231365509 -11298844 + AluSx SINE Alu 1 297 -15 815 248 231 40 chr1 231365509 231365654 -11298699 + HAL1 LINE L1 1077 1193 -1314 2265 113 3 7 chr1 231365654 231365964 -11298389 + AluSc SINE Alu 1 309 0 815 248 231 40 chr1 231365964 231366755 -11297598 + HAL1 LINE L1 1193 2227 -280 1985 172 0 0 chr1 231366804 231367112 -11297241 + AluSx SINE Alu 1 308 -4 228 146 55 0 chr1 231367469 231367524 -11296829 + T-rich Low_complexity Low_complexity 3 60 0 396 321 30 0 chr1 231367532 231367663 -11296690 + MIR SINE MIR 118 252 -10 1657 162 70 0 chr1 231367842 231368114 -11296239 + AluJo SINE Alu 1 291 -21 206 231 15 0 chr1 231368115 231368180 -11296173 + GA-rich Low_complexity Low_complexity 2 67 0 186 43 0 0 chr1 231368180 231368203 -11296150 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 938 201 13 0 chr1 231368220 231368379 -11295974 + FRAM SINE Alu 1 161 -5 2222 84 20 7 chr1 231368413 231368709 -11295644 + AluY SINE Alu 1 300 -11 440 209 94 64 chr1 231368818 231368975 -11295378 - L1ME1 LINE L1 0 6178 6009 187 216 0 78 chr1 231369028 231369079 -11295274 + L2 LINE L2 3240 3286 -27 23 0 0 0 chr1 231371279 231371302 -11293051 + AT_rich Low_complexity Low_complexity 1 23 0 1861 147 19 29 chr1 231371476 231371790 -11292563 + AluJb SINE Alu 1 311 -1 2189 103 0 7 chr1 231371841 231372132 -11292221 - AluSc SINE Alu -20 289 1 2224 76 50 20 chr1 231372367 231372669 -11291684 - AluSq SINE Alu -2 311 1 28 29 0 0 chr1 231372984 231373019 -11291334 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr1 231373562 231373600 -11290753 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr1 231374137 231374162 -11290191 + AT_rich Low_complexity Low_complexity 1 25 0 1151 51 0 0 chr1 231374308 231374445 -11289908 + L1PA6 LINE L1 6018 6154 0 181 0 69 0 chr1 231374458 231374487 -11289866 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chr1 231375452 231375483 -11288870 + (T)n Simple_repeat Simple_repeat 1 31 0 2284 97 0 10 chr1 231376787 231377097 -11287256 - AluSc SINE Alu -2 307 1 1970 112 7 52 chr1 231377097 231377402 -11286951 - AluSx SINE Alu -21 291 1 369 206 53 46 chr1 231377451 231377582 -11286771 + L1MC5 LINE L1 7512 7643 -318 2253 98 0 3 chr1 231377582 231377878 -11286475 + AluSg SINE Alu 1 295 -15 574 239 11 45 chr1 231377886 231378062 -11286291 + L1MC5 LINE L1 7747 7916 -45 443 73 15 0 chr1 231378081 231378149 -11286204 + (TA)n Simple_repeat Simple_repeat 1 69 0 920 126 0 70 chr1 231378163 231378306 -11286047 - FLAM_C SINE Alu 0 133 1 2263 113 0 0 chr1 231378547 231378857 -11285496 - AluSg SINE Alu 0 310 1 308 154 77 0 chr1 231378949 231379001 -11285352 - L2 LINE L2 -4 3309 3254 2028 131 7 7 chr1 231379317 231379614 -11284739 - AluSp SINE Alu -4 309 13 2199 105 0 7 chr1 231379979 231380275 -11284078 + AluSq SINE Alu 1 294 -19 251 166 90 0 chr1 231380413 231380475 -11283878 + L1P2 LINE L1 5375 5447 -708 2097 98 10 24 chr1 231380475 231380771 -11283582 - AluSc SINE Alu -17 292 1 337 264 149 8 chr1 231380857 231380978 -11283375 + L1MC4a LINE L1 5787 5924 -1884 1425 73 6 0 chr1 231380986 231381165 -11283188 - AluSc SINE Alu -6 303 124 2307 87 0 0 chr1 231381178 231381464 -11282889 - AluY SINE Alu -25 286 1 1008 181 54 10 chr1 231381555 231381759 -11282594 - MER58A DNA MER1_type 0 224 12 21 0 0 0 chr1 231381916 231381937 -11282416 + AT_rich Low_complexity Low_complexity 1 21 0 2122 129 0 3 chr1 231381959 231382261 -11282092 + AluSx SINE Alu 1 301 -11 1005 43 0 0 chr1 231382261 231382378 -11281975 + AluY SINE Alu 176 292 -19 2358 85 0 22 chr1 231382380 231382698 -11281655 + AluY SINE Alu 1 311 0 2156 130 0 3 chr1 231385198 231385505 -11278848 - AluSx SINE Alu -6 306 1 21 0 0 0 chr1 231385604 231385625 -11278728 + AT_rich Low_complexity Low_complexity 1 21 0 489 284 19 43 chr1 231385709 231385871 -11278482 - MER5B DNA MER1_type -20 158 1 2260 87 0 17 chr1 231385953 231386252 -11278101 + AluY SINE Alu 1 294 -17 2286 83 30 3 chr1 231386273 231386575 -11277778 + AluSq SINE Alu 1 310 -3 346 277 77 32 chr1 231386755 231386910 -11277443 - MER103 DNA DNA -3 163 2 2229 111 0 7 chr1 231387174 231387480 -11276873 - AluY SINE Alu -3 308 5 2383 103 0 0 chr1 231387563 231387875 -11276478 - AluSx SINE Alu 0 312 1 654 199 75 14 chr1 231387878 231388024 -11276329 - FRAM SINE Alu -8 158 4 2271 97 3 0 chr1 231388177 231388465 -11275888 + AluSp SINE Alu 1 289 -24 1512 178 26 36 chr1 231388788 231388931 -11275422 + AluJb SINE Alu 1 144 -168 2420 70 0 7 chr1 231388931 231389230 -11275123 + AluSg SINE Alu 1 297 -13 1512 178 26 36 chr1 231389230 231389389 -11274964 + AluJb SINE Alu 144 300 -12 1441 167 44 17 chr1 231389643 231389936 -11274417 - AluJo SINE Alu -11 301 1 435 198 10 0 chr1 231390230 231390326 -11274027 - L1MC4 LINE L1 0 8042 7946 303 231 54 68 chr1 231391578 231391651 -11272702 - L1MC5 LINE L1 -108 7853 7781 1945 141 7 0 chr1 231391651 231391949 -11272404 - AluSx SINE Alu -12 300 1 303 231 54 68 chr1 231391949 231392022 -11272331 - L1MC5 LINE L1 -180 7781 7709 2100 114 13 10 chr1 231392034 231392333 -11272020 - AluSq SINE Alu -13 300 1 2096 129 7 0 chr1 231392356 231392651 -11271702 - AluSg SINE Alu -13 297 1 1521 165 0 0 chr1 231392691 231392933 -11271420 - AluJb SINE Alu -13 299 58 886 126 0 70 chr1 231392942 231393085 -11271268 - FLAM_C SINE Alu 0 133 1 232 340 134 51 chr1 231393147 231393477 -11270876 + L2 LINE L2 1305 1606 -1708 2358 90 3 6 chr1 231393477 231393788 -11270565 - AluSq SINE Alu -3 310 1 232 340 134 51 chr1 231393788 231394886 -11269467 + L2 LINE L2 1606 2852 -462 222 238 0 63 chr1 231394889 231394952 -11269401 - L2 LINE L2 -52 3220 3162 235 253 169 0 chr1 231395101 231395184 -11269169 + L2 LINE L2 3217 3313 0 1869 152 3 26 chr1 231395618 231395753 -11268600 + AluJb SINE Alu 2 139 -173 2131 107 3 3 chr1 231395753 231396044 -11268309 + AluSg SINE Alu 1 291 -19 528 59 0 0 chr1 231396045 231396113 -11268240 + (TA)n Simple_repeat Simple_repeat 1 68 0 2248 124 0 0 chr1 231396116 231396415 -11267938 + AluSx SINE Alu 1 299 -13 1869 152 3 26 chr1 231396415 231396576 -11267777 + AluJb SINE Alu 141 297 -15 1728 155 45 10 chr1 231397337 231397628 -11266725 - AluJo SINE Alu -8 304 4 2486 65 0 0 chr1 231397662 231397956 -11266397 - AluY SINE Alu -17 294 1 2125 113 3 10 chr1 231398195 231398495 -11265858 + AluSx SINE Alu 1 298 -14 2216 107 0 3 chr1 231398751 231399050 -11265303 + AluSx SINE Alu 1 298 -14 2182 122 0 7 chr1 231399866 231400170 -11264183 - AluSx SINE Alu -10 302 1 1075 210 10 5 chr1 231400215 231400415 -11263938 - MER20 DNA MER1_type -1 218 18 189 296 86 0 chr1 231401147 231401228 -11263125 + L2 LINE L2 3179 3266 -47 2023 115 18 0 chr1 231401551 231401861 -11262492 + AluSx SINE Alu 1 315 0 2594 49 0 3 chr1 231402506 231402814 -11261539 - AluY SINE Alu -4 307 1 2342 99 0 0 chr1 231403023 231403325 -11261028 + AluY SINE Alu 1 302 -9 364 277 62 0 chr1 231403835 231403947 -11260406 - L1MEd LINE L1 -5484 635 517 1504 194 7 23 chr1 231404655 231404964 -11259389 - AluJo SINE Alu 0 312 9 2111 139 0 0 chr1 231405000 231405303 -11259050 + AluSx SINE Alu 1 303 -9 442 256 37 74 chr1 231405458 231405673 -11258680 - L1MC4a LINE L1 -1899 5909 5703 1422 151 115 14 chr1 231405675 231405954 -11258399 + AluJo SINE Alu 1 307 -5 922 178 6 12 chr1 231405968 231406131 -11258222 + FRAM SINE Alu 1 159 -17 584 234 157 68 chr1 231406132 231406343 -11258010 - L1MC4a LINE L1 -2099 5709 5455 1832 159 10 3 chr1 231406343 231406639 -11257714 + AluJo SINE Alu 1 298 -14 584 234 157 68 chr1 231406639 231406765 -11257588 - L1MC4a LINE L1 -2353 5455 5342 2243 93 7 13 chr1 231406850 231407160 -11257193 - AluSp SINE Alu -5 308 1 811 208 7 13 chr1 231407163 231407317 -11257036 - FRAM SINE Alu -20 156 4 2320 204 113 75 chr1 231407416 231407748 -11256605 - L1ME1 LINE L1 0 6166 5848 1528 191 11 0 chr1 231407748 231408021 -11256332 - AluJb SINE Alu -33 279 4 2320 204 113 75 chr1 231408021 231408125 -11256228 - L1ME1 LINE L1 -318 5848 5749 362 100 17 0 chr1 231408125 231408185 -11256168 + (TATTG)n Simple_repeat Simple_repeat 5 65 0 2050 128 0 7 chr1 231408185 231408467 -11255886 - AluSx SINE Alu -32 280 1 2320 204 113 75 chr1 231408467 231408973 -11255380 - L1ME1 LINE L1 -417 5749 5186 2294 106 3 0 chr1 231408973 231409275 -11255078 - AluSx SINE Alu -9 303 1 2320 204 113 75 chr1 231409275 231409328 -11255025 - L1ME1 LINE L1 -980 5186 5136 1817 106 4 0 chr1 231409343 231409579 -11254774 + AluSx SINE Alu 1 237 -75 335 233 81 0 chr1 231459688 231459774 -11204579 - MIR SINE MIR -50 212 120 2272 100 13 10 chr1 231459966 231460276 -11204077 + AluSx SINE Alu 1 311 -1 1814 158 9 53 chr1 231461713 231462035 -11202318 + AluJb SINE Alu 1 308 -4 1989 142 0 22 chr1 231462035 231462346 -11202007 + AluSq SINE Alu 1 304 -9 310 288 181 10 chr1 231462346 231462608 -11201745 + L2 LINE L2 2691 3036 -236 561 129 35 0 chr1 231462859 231462944 -11201409 + FLAM_A SINE Alu 34 121 -21 2224 118 16 0 chr1 231462973 231463279 -11201074 - AluSx SINE Alu -1 311 1 1655 163 0 45 chr1 231463819 231464108 -11200245 + AluJb SINE Alu 1 276 -36 753 152 64 0 chr1 231464132 231464257 -11200096 + FLAM_A SINE Alu 1 133 0 2397 100 0 0 chr1 231464892 231465202 -11199151 - AluSx SINE Alu -2 310 1 1975 219 83 8 chr1 231465881 231466410 -11197943 + L1ME3A LINE L1 5597 6165 -5 4242 75 9 14 chr1 231467325 231467882 -11196471 + MER41A LTR ERV1 1 554 0 2086 134 3 10 chr1 231467980 231468293 -11196060 - AluJo SINE Alu -1 311 1 413 286 51 45 chr1 231468644 231468938 -11195415 + L2 LINE L2 2790 3089 -183 2679 137 115 77 chr1 231469067 231469386 -11194967 + MER4A LTR ERV1 1 306 -358 1919 124 68 22 chr1 231469386 231469708 -11194645 - MER1B DNA MER1_type 0 337 1 2679 137 115 77 chr1 231469708 231470024 -11194329 + MER4A LTR ERV1 306 660 -4 229 338 15 0 chr1 231470038 231470106 -11194247 + L2 LINE L2 3204 3272 0 273 232 73 151 chr1 231470209 231470266 -11194087 - MIR SINE MIR -6 256 196 2411 99 13 0 chr1 231470266 231470570 -11193783 - AluSx SINE Alu -4 308 1 273 232 73 151 chr1 231470570 231470666 -11193687 - MIR SINE MIR -66 196 125 1858 192 0 0 chr1 231470666 231470978 -11193375 + AluJo SINE Alu 1 312 0 273 232 73 151 chr1 231470978 231471059 -11193294 - MIR SINE MIR -137 125 39 2419 69 3 16 chr1 231471118 231471421 -11192932 + AluSp SINE Alu 7 305 -8 1924 96 4 4 chr1 231471472 231471721 -11192632 + AluSx SINE Alu 1 249 -63 428 86 0 0 chr1 231476733 231476791 -11187562 + AluSx SINE Alu 245 302 -10 337 61 0 0 chr1 231476820 231476869 -11187484 - Alu SINE Alu -7 295 247 2002 156 13 0 chr1 231477387 231477695 -11186658 - AluJo SINE Alu 0 312 1 2283 116 0 0 chr1 231477823 231478125 -11186228 + AluSx SINE Alu 1 302 -10 624 230 150 24 chr1 231478226 231478439 -11185914 + MIR SINE MIR 10 249 -13 2077 104 36 0 chr1 231478820 231479098 -11185255 + AluSg SINE Alu 5 292 -18 226 245 49 20 chr1 231479784 231479886 -11184467 + L1ME4a LINE L1 5984 6088 -33 1808 122 86 0 chr1 231479891 231480170 -11184183 - AluSp SINE Alu -10 303 1 414 0 0 0 chr1 231480172 231480218 -11184135 + (TG)n Simple_repeat Simple_repeat 2 47 0 2551 71 0 0 chr1 231480228 231480539 -11183814 - AluY SINE Alu 0 311 1 1458 169 27 26 chr1 231481485 231482045 -11182308 + pTR5 LTR ERV1 743 1346 -1092 4495 140 30 69 chr1 231482058 231482913 -11181440 + LTR12 LTR ERV1 5 826 0 2175 124 3 3 chr1 231483184 231483482 -11180871 + AluSx SINE Alu 1 298 -14 4676 144 23 24 chr1 231483482 231483905 -11180448 - LTR39 LTR ERV1 0 783 360 2230 116 0 13 chr1 231483905 231484207 -11180146 - AluSx SINE Alu -14 298 1 4676 144 23 24 chr1 231484207 231484567 -11179786 - LTR39 LTR ERV1 -423 360 1 305 321 46 30 chr1 231485237 231485368 -11178985 + MIR3 SINE MIR 68 200 -8 488 201 201 0 chr1 231485375 231485525 -11178828 + MER5A DNA MER1_type 4 188 -1 181 303 30 0 chr1 231485624 231485690 -11178663 + MER5B DNA MER1_type 1 68 -110 2267 113 7 0 chr1 231485965 231486258 -11178095 - AluSx SINE Alu -17 295 1 333 289 257 0 chr1 231486485 231486789 -11177564 - MLT1L LTR MaLR -10 605 224 2659 143 123 39 chr1 231486837 231487398 -11176955 - LTR18B LTR ERVL -6 608 1 436 266 11 6 chr1 231487917 231488094 -11176259 + C-rich Low_complexity Low_complexity 1 178 0 * 444 236 29 6 chr1 231488081 231488255 -11176098 + (CA)n Simple_repeat Simple_repeat 2 179 0 246 215 21 4 chr1 231488282 231488526 -11175827 + (CA)n Simple_repeat Simple_repeat 1 248 0 2309 159 39 10 chr1 231488723 231489137 -11175216 - MSTB LTR MaLR 0 426 1 224 360 7 0 chr1 231489209 231489359 -11174994 + (CA)n Simple_repeat Simple_repeat 2 152 0 320 247 82 0 chr1 231489822 231489907 -11174446 + L1MC4a LINE L1 5573 5664 -2144 619 234 35 70 chr1 231489929 231490186 -11174167 + L1MC4a LINE L1 5740 5987 -1821 1216 165 82 0 chr1 231490186 231490392 -11173961 + AluJo SINE Alu 83 305 -7 248 135 0 19 chr1 231490393 231490445 -11173908 + (GGAAA)n Simple_repeat Simple_repeat 1 51 0 282 116 0 0 chr1 231490486 231490529 -11173824 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 332 276 46 86 chr1 231490600 231490774 -11173579 + L1MC4a LINE L1 6056 6222 -1586 228 143 0 0 chr1 231491475 231491517 -11172836 + (TGG)n Simple_repeat Simple_repeat 1 42 0 2454 124 34 55 chr1 231493851 231494094 -11170259 - MSTA LTR MaLR 0 428 196 2063 55 55 0 chr1 231494094 231494348 -11170005 - AluY SINE Alu -11 300 33 2454 124 34 55 chr1 231494348 231494541 -11169812 - MSTA LTR MaLR -232 196 1 2250 127 0 6 chr1 231494576 231494890 -11169463 + AluSx SINE Alu 1 312 0 3684 174 19 32 chr1 231495182 231495769 -11168584 - L1MB3 LINE L1 0 6183 5605 2264 119 7 7 chr1 231495769 231496079 -11168274 - AluSx SINE Alu -2 310 1 3684 174 19 32 chr1 231496079 231496208 -11168145 - L1MB3 LINE L1 -578 5605 5476 244 119 0 24 chr1 231496446 231496488 -11167865 - MSTA LTR MaLR -264 164 124 4857 148 19 6 chr1 231496488 231496709 -11167644 - L1MA8 LINE L1 -31 6260 6043 2336 104 3 0 chr1 231496709 231497008 -11167345 - AluSx SINE Alu -12 300 1 4857 148 19 6 chr1 231497008 231497652 -11166701 - L1MA8 LINE L1 -248 6043 5384 243 167 111 19 chr1 231497640 231497694 -11166659 - L1MB3 LINE L1 -685 5486 5428 * 2192 117 3 0 chr1 231498085 231498383 -11165970 + AluSg SINE Alu 1 299 -11 2231 86 7 20 chr1 231499461 231499762 -11164591 + AluSc SINE Alu 1 297 -12 304 233 0 0 chr1 231500437 231500497 -11163856 - Tigger5 DNA MER2_type 0 2323 2264 * 449 129 0 0 chr1 231500496 231500566 -11163787 + Tigger5 DNA MER2_type 2251 2320 -3 373 175 12 25 chr1 231500566 231500645 -11163708 - Tigger5 DNA MER2_type -2245 78 1 2149 141 0 0 chr1 231500698 231500997 -11163356 + AluSx SINE Alu 1 299 -13 2010 129 0 0 chr1 231501428 231501707 -11162646 - AluSx SINE Alu -8 304 26 663 268 86 88 chr1 231501801 231502021 -11162332 - L1ME4a LINE L1 -173 5948 5729 2477 82 0 0 chr1 231502021 231502325 -11162028 - AluY SINE Alu -7 304 1 3871 47 6 2 chr1 231502335 231502806 -11161547 - L1PA5 LINE L1 -1 6153 5681 663 268 86 88 chr1 231502806 231502934 -11161419 - L1ME4a LINE L1 -401 5720 5593 1892 126 5 116 chr1 231502934 231503022 -11161331 + MER7A DNA MER2_type 3 99 -2939 2214 122 7 0 chr1 231503022 231503325 -11161028 + AluSx SINE Alu 1 305 -7 2134 91 44 0 chr1 231503325 231503599 -11160754 + AluSx SINE Alu 5 290 -22 1892 126 5 116 chr1 231503599 231503709 -11160644 + MER7A DNA MER2_type 98 219 -2819 1886 114 15 8 chr1 231503709 231503971 -11160382 + AluJo SINE Alu 23 286 -26 186 43 0 0 chr1 231503971 231503994 -11160359 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1892 126 5 116 chr1 231503994 231504181 -11160172 + MER7A DNA MER2_type 217 346 0 663 268 86 88 chr1 231504181 231504324 -11160029 - L1ME4a LINE L1 -528 5593 5444 722 261 82 25 chr1 231504324 231504569 -11159784 - MIR SINE MIR 0 262 4 663 268 86 88 chr1 231504569 231504702 -11159651 - L1ME4a LINE L1 -677 5444 5312 818 164 8 15 chr1 231504723 231504857 -11159496 + AluJ SINE Alu 1 133 -169 741 193 90 0 chr1 231505652 231505797 -11158556 + AluJ SINE Alu 132 289 -23 2203 96 6 26 chr1 231505805 231506117 -11158236 + AluSx SINE Alu 1 306 -6 318 303 72 23 chr1 231506295 231506516 -11157837 + HAL1b LINE L1 84 315 -1033 1693 80 9 0 chr1 231506643 231506856 -11157497 + AluSq SINE Alu 1 215 -98 553 113 0 0 chr1 231506903 231506983 -11157370 + AluSq SINE Alu 225 304 -9 865 157 0 0 chr1 231507035 231507175 -11157178 - AluJ SINE Alu -12 300 161 675 149 9 0 chr1 231507175 231507282 -11157071 - AluJ SINE Alu -203 109 2 305 255 31 10 chr1 231507293 231507384 -11156969 - MIR SINE MIR -55 207 112 2071 143 0 7 chr1 231507384 231507692 -11156661 + AluSg SINE Alu 1 306 -4 228 135 0 0 chr1 231507698 231507735 -11156618 + (A)n Simple_repeat Simple_repeat 1 37 0 1958 143 67 25 chr1 231508274 231508632 -11155721 - MER83C LTR ERV1 0 373 1 2816 165 31 2 chr1 231508692 231509202 -11155151 + L1MB3 LINE L1 5644 6168 -15 186 224 0 0 chr1 231509207 231509256 -11155097 + (TA)n Simple_repeat Simple_repeat 1 49 0 22 43 0 21 chr1 231509260 231509281 -11155072 + AT_rich Low_complexity Low_complexity 1 21 -25 1486 164 73 44 chr1 231509281 231509556 -11154797 + AluJo SINE Alu 2 284 -28 22 43 0 21 chr1 231509556 231509581 -11154772 + AT_rich Low_complexity Low_complexity 21 46 0 2745 108 182 0 chr1 231509859 231510305 -11154048 - MER1A DNA MER1_type 0 527 1 449 211 35 44 chr1 231510770 231510884 -11153469 - AluJo SINE Alu -153 159 47 2191 90 7 23 chr1 231510992 231511293 -11153060 - AluSx SINE Alu -16 296 1 2239 84 3 3 chr1 231511531 231511817 -11152536 + AluSc SINE Alu 1 286 -23 552 271 110 112 chr1 231511988 231512071 -11152282 - LTR67 LTR ERVL -2 555 473 2519 159 2 25 chr1 231512071 231512505 -11151848 - L1PA16 LINE L1 -9 6157 5734 552 271 110 112 chr1 231512505 231512975 -11151378 - LTR67 LTR ERVL -84 473 3 2100 103 65 0 chr1 231513081 231513371 -11150982 - AluSx SINE Alu -3 309 1 3598 186 19 95 chr1 231513641 231513839 -11150514 + L1ME LINE L1 4433 4644 -1518 2238 108 16 10 chr1 231513839 231514144 -11150209 - AluSx SINE Alu -1 311 5 3598 186 19 95 chr1 231514144 231514818 -11149535 + L1ME LINE L1 4644 5368 -794 1812 124 69 0 chr1 231514818 231515092 -11149261 + AluSx SINE Alu 1 293 -19 3598 186 19 95 chr1 231515092 231515204 -11149149 + L1ME LINE L1 5368 5313 -849 2509 47 3 0 chr1 231515204 231515500 -11148853 + AluY SINE Alu 1 297 -14 3598 186 19 95 chr1 231515500 231515700 -11148653 + L1ME LINE L1 5312 5526 -636 1599 180 130 14 chr1 231515952 231516307 -11148046 - MSTD LTR MaLR 0 396 1 3604 131 6 6 chr1 231519363 231519889 -11144464 + MER1A DNA MER1_type 2 527 0 292 185 109 92 chr1 231519898 231519927 -11144426 + MIR SINE MIR 43 70 -192 2353 87 0 3 chr1 231519927 231520226 -11144127 - AluSc SINE Alu -11 298 1 292 185 109 92 chr1 231520226 231520315 -11144038 + MIR SINE MIR 70 163 -99 2064 123 3 0 chr1 231520349 231520633 -11143720 + AluSx SINE Alu 14 298 -14 967 113 44 0 chr1 231520633 231520793 -11143560 + L1MA8 LINE L1 6120 6286 -5 1368 137 28 5 chr1 231520806 231521018 -11143335 - AluJo SINE Alu -11 301 85 276 239 14 0 chr1 231521034 231521105 -11143248 + MIR SINE MIR 180 251 -11 2527 78 0 3 chr1 231521634 231521941 -11142412 - AluSq SINE Alu -7 306 1 544 234 38 25 chr1 231522583 231522741 -11141612 - MIR3 SINE MIR -6 202 43 2274 105 10 16 chr1 231523442 231523756 -11140597 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 231524726 231524748 -11139605 + AT_rich Low_complexity Low_complexity 1 22 0 2346 87 0 7 chr1 231524922 231525241 -11139112 - AluSg SINE Alu 0 310 1 2061 144 3 0 chr1 231525677 231525983 -11138370 - AluSx SINE Alu -5 307 1 465 210 48 48 chr1 231525999 231526123 -11138230 - MIR SINE MIR -132 130 7 264 284 87 16 chr1 231526982 231527221 -11137132 - L2 LINE L2 -1387 1927 1618 1098 89 0 13 chr1 231527339 231527496 -11136857 + MER41B LTR ERV1 481 635 0 541 136 0 58 chr1 231527496 231527599 -11136754 + MER41B-int LTR ERV1 1 97 -7659 * 1108 134 0 17 chr1 231527587 231527766 -11136587 + MER41A-int LTR ERV1 4844 5019 -927 * 3759 97 37 6 chr1 231527764 231528280 -11136073 + MER41A-int LTR ERV1 5415 5946 0 3428 64 7 2 chr1 231528280 231528720 -11135633 + MER41A LTR ERV1 1 442 -112 867 108 0 0 chr1 231528724 231528844 -11135509 - AluSg/x SINE Alu -21 291 172 607 68 0 0 chr1 231528846 231528920 -11135433 - AluSg/x SINE Alu -111 199 126 2385 93 0 6 chr1 231528920 231529233 -11135120 - AluY SINE Alu 0 311 1 747 182 36 62 chr1 231529847 231530039 -11134314 - MER53 DNA DNA 0 189 3 638 121 90 11 chr1 231530669 231530799 -11133554 - L1MA3 LINE L1 0 6300 6157 2098 135 6 18 chr1 231531261 231531587 -11132766 + MER65C LTR ERV1 1 322 -139 678 179 0 2 chr1 231531598 231531845 -11132508 + AluJ SINE Alu 5 299 -13 2219 100 20 0 chr1 231531851 231532150 -11132203 + AluSp SINE Alu 1 305 -8 2300 98 0 0 chr1 231532152 231532448 -11131905 + AluSg SINE Alu 3 298 -12 710 176 16 0 chr1 231532465 231532590 -11131763 + MER65C LTR ERV1 335 461 0 711 177 159 26 chr1 231532755 231532981 -11131372 - MER20B DNA MER1_type 0 783 528 2168 126 12 29 chr1 231533007 231533327 -11131026 + Tigger3(Golem) DNA MER2_type 1 316 -2713 2117 144 0 0 chr1 231533327 231533625 -11130728 - AluSx SINE Alu -13 299 2 2168 126 12 29 chr1 231533625 231533646 -11130707 + Tigger3(Golem) DNA MER2_type 316 336 -2693 2169 85 0 4 chr1 231533750 231534031 -11130322 + AluY SINE Alu 30 309 -2 499 90 0 0 chr1 231534031 231534098 -11130255 - PABL_A-int LTR ERV1 -565 4450 4384 21 36 0 0 chr1 231534098 231534126 -11130227 + AT_rich Low_complexity Low_complexity 1 28 0 44003 30 4 1 chr1 231534132 231540079 -11124274 - L1PA3 LINE L1 0 6155 193 1151 60 40 0 chr1 231540085 231540236 -11124117 - MER41B LTR ERV1 0 635 479 192 182 0 68 chr1 231540236 231540280 -11124073 + MER5A DNA MER1_type 149 189 0 236 301 230 20 chr1 231540390 231540586 -11123767 - MIR SINE MIR -6 256 20 2460 97 0 0 chr1 231540599 231540907 -11123446 - AluSq SINE Alu -5 308 1 1272 256 22 53 chr1 231541020 231541434 -11122919 - LTR16A LTR ERVL -14 436 36 33 0 0 0 chr1 231541504 231541537 -11122816 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr1 231541644 231541664 -11122689 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2069 107 7 18 chr1 231541669 231541949 -11122404 - AluSq SINE Alu -36 277 1 210 245 19 0 chr1 231542050 231542103 -11122250 + MIR SINE MIR 167 220 -42 2009 142 10 10 chr1 231542160 231542469 -11121884 + AluSx SINE Alu 1 309 -3 885 211 64 86 chr1 231542596 231542788 -11121565 + MLT1D LTR MaLR 1 185 -320 2226 104 10 29 chr1 231542788 231543097 -11121256 + AluSq SINE Alu 1 303 -10 885 211 64 86 chr1 231543097 231543231 -11121122 + MLT1D LTR MaLR 185 320 -185 337 304 0 0 chr1 231543298 231543400 -11120953 - L1MC5 LINE L1 -1227 6734 6633 1963 112 46 11 chr1 231543526 231543811 -11120542 + AluSq SINE Alu 1 295 -18 272 261 116 42 chr1 231543817 231543914 -11120439 - L1MC4 LINE L1 -27 8015 7927 2202 138 0 0 chr1 231543914 231544225 -11120128 - AluSx SINE Alu -1 311 1 272 261 116 42 chr1 231544225 231544342 -11120011 - L1MC4 LINE L1 -115 7927 7785 1677 178 35 7 chr1 231544358 231544481 -11119872 + AluJo SINE Alu 1 119 -193 284 48 24 0 chr1 231544481 231544523 -11119830 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1677 178 35 7 chr1 231544523 231544685 -11119668 + AluJo SINE Alu 119 294 -18 2398 97 0 0 chr1 231544719 231545029 -11119324 - AluSq SINE Alu -3 310 1 892 133 91 24 chr1 231545177 231545342 -11119011 + AluJo SINE Alu 127 302 -10 2256 80 7 3 chr1 231545575 231545861 -11118492 + AluSg SINE Alu 1 287 -23 2466 88 0 0 chr1 231546384 231546692 -11117661 - AluY SINE Alu -3 308 1 1670 167 36 20 chr1 231546733 231547039 -11117314 - AluJo SINE Alu -1 311 1 1032 172 52 0 chr1 231547043 231547217 -11117136 - AluJo SINE Alu -24 288 106 676 105 0 0 chr1 231547318 231547413 -11116940 - L1MC/D LINE L1 -632 5712 5618 6895 101 28 30 chr1 231547424 231547743 -11116610 - L1MA3 LINE L1 -1 6304 5986 2304 120 0 0 chr1 231547743 231548051 -11116302 - AluSx SINE Alu -4 308 1 6895 101 28 30 chr1 231548051 231548254 -11116099 - L1MA3 LINE L1 -319 5986 5784 2594 61 3 0 chr1 231548254 231548564 -11115789 - AluY SINE Alu 0 311 1 6895 101 28 30 chr1 231548564 231549158 -11115195 - L1MA3 LINE L1 -521 5784 5191 1680 92 0 5 chr1 231549158 231549409 -11114944 - AluSc SINE Alu 0 320 71 2386 55 0 39 chr1 231549409 231549718 -11114635 - AluY SINE Alu -11 300 2 6895 101 28 30 chr1 231549718 231549802 -11114551 - L1MA3 LINE L1 -1112 5193 5103 2197 133 0 0 chr1 231550342 231550650 -11113703 - AluSq SINE Alu -3 310 3 359 193 74 22 chr1 231550666 231550801 -11113552 - L1MEc LINE L1 -4106 2290 2149 701 189 71 0 chr1 231550824 231550951 -11113402 - AluSg/x SINE Alu -11 301 166 1287 137 61 0 chr1 231551692 231551889 -11112464 + AluSg/x SINE Alu 84 292 -18 24 0 0 0 chr1 231551911 231551935 -11112418 + AT_rich Low_complexity Low_complexity 1 24 0 1777 169 3 7 chr1 231552159 231552454 -11111899 + AluJb SINE Alu 1 294 -18 1561 128 71 50 chr1 231552650 231552931 -11111422 + AluJb SINE Alu 1 287 -25 1939 134 0 31 chr1 231552942 231553078 -11111275 + AluSx SINE Alu 1 140 -169 2206 110 7 3 chr1 231553078 231553379 -11110974 + AluSq SINE Alu 1 302 -11 1939 134 0 31 chr1 231553379 231553560 -11110793 + AluSx SINE Alu 140 309 0 2198 104 0 0 chr1 231553563 231553841 -11110512 + AluSq SINE Alu 26 303 -10 1227 111 0 6 chr1 231554041 231554212 -11110141 + AluSg/x SINE Alu 129 298 -12 1600 131 112 4 chr1 231554255 231554515 -11109838 + AluJo SINE Alu 5 292 -20 2821 10 0 0 chr1 231554522 231554823 -11109530 + AluY SINE Alu 7 307 -4 1875 149 11 0 chr1 231555112 231555394 -11108959 + AluJb SINE Alu 1 285 -27 2374 42 14 0 chr1 231557339 231557625 -11106728 + AluY SINE Alu 1 290 -21 2186 92 0 35 chr1 231558721 231559035 -11105318 - AluSq SINE Alu -10 303 1 321 367 58 25 chr1 231559146 231559421 -11104932 + L2 LINE L2 920 1203 -2111 2167 105 0 0 chr1 231559496 231559800 -11104553 - AluSx SINE Alu -6 306 3 1977 127 3 7 chr1 231560206 231560505 -11103848 + AluSq SINE Alu 2 299 -14 1984 85 64 3 chr1 231560586 231560869 -11103484 + AluY SINE Alu 1 300 -11 1685 91 68 4 chr1 231560975 231561227 -11103126 + AluSg SINE Alu 29 296 -14 2047 114 7 3 chr1 231561820 231562117 -11102236 - AluSx SINE Alu -14 298 1 1843 93 29 11 chr1 231562307 231562586 -11101767 - AluSx SINE Alu -15 297 14 2118 97 3 0 chr1 231562992 231563281 -11101072 + AluSg SINE Alu 1 290 -20 647 117 0 0 chr1 231563310 231563404 -11100949 + AluSx SINE Alu 1 94 -219 2773 3 0 0 chr1 231563406 231563713 -11100640 + AluYa5 SINE Alu 2 308 -3 1725 84 0 0 chr1 231563712 231563939 -11100414 + AluSx SINE Alu 82 308 -4 * 2158 90 7 3 chr1 231563940 231564239 -11100114 + AluSp SINE Alu 1 300 -13 2372 70 0 0 chr1 231564242 231564542 -11099811 + AluY SINE Alu 1 300 -11 313 81 32 0 chr1 231564543 231564605 -11099748 + (TTAAA)n Simple_repeat Simple_repeat 2 65 0 823 150 0 41 chr1 231565196 231565343 -11099010 + AluJb SINE Alu 1 141 -171 1736 123 0 0 chr1 231565363 231565614 -11098739 + AluSx SINE Alu 53 303 -9 2054 110 3 0 chr1 231566575 231566883 -11097470 + AluSp SINE Alu 1 309 0 2168 103 0 3 chr1 231566983 231567294 -11097059 + AluSg SINE Alu 1 310 0 258 105 0 0 chr1 231567296 231567334 -11097019 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 2193 98 0 0 chr1 231567336 231567632 -11096721 + AluSg SINE Alu 1 296 -14 271 249 136 35 chr1 231567652 231567821 -11096532 + L1MC4a LINE L1 6033 6218 -1590 374 358 60 0 chr1 231567841 231567992 -11096361 - L2 LINE L2 -233 3080 2921 2299 84 0 22 chr1 231568078 231568398 -11095955 - AluSq SINE Alu 0 313 1 1846 116 3 67 chr1 231568462 231568790 -11095563 + AluSp SINE Alu 1 307 -6 2310 91 7 3 chr1 231568800 231569108 -11095245 + AluSg SINE Alu 1 309 -1 1045 285 155 11 chr1 231569140 231569688 -11094665 - L2 LINE L2 -580 2734 2108 2167 93 3 3 chr1 231569689 231569989 -11094364 - AluSp SINE Alu -11 302 3 850 222 9 14 chr1 231570022 231570152 -11094201 + AluJo SINE Alu 6 136 -176 1583 188 7 10 chr1 231570152 231570460 -11093893 + AluJo SINE Alu 1 307 -5 850 222 9 14 chr1 231570460 231570545 -11093808 + AluJo SINE Alu 136 220 -92 189 0 0 0 chr1 231570563 231570584 -11093769 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1367 102 8 81 chr1 231570603 231570681 -11093672 + AluSg/x SINE Alu 73 155 -157 2144 127 0 0 chr1 231570681 231570980 -11093373 + AluSx SINE Alu 1 299 -13 1367 102 8 81 chr1 231570980 231571137 -11093216 + AluSg/x SINE Alu 155 291 -21 1861 155 16 0 chr1 231571480 231571784 -11092569 + AluSx SINE Alu 1 309 -3 695 210 49 0 chr1 231571841 231571984 -11092369 - MLT1E LTR MaLR -110 483 334 887 177 57 34 chr1 231572068 231572243 -11092110 - MLT1E LTR MaLR -408 185 7 1689 146 20 3 chr1 231572517 231572811 -11091542 + AluSx SINE Alu 1 299 -13 2081 106 14 0 chr1 231572811 231573103 -11091250 + AluSx SINE Alu 1 296 -16 2312 153 16 59 chr1 231573255 231573660 -11090693 + MSTB LTR MaLR 1 387 -39 2161 116 0 0 chr1 231573660 231573970 -11090383 - AluSx SINE Alu -2 310 1 2312 153 16 59 chr1 231573970 231574008 -11090345 + MSTB LTR MaLR 387 425 -1 2194 104 0 0 chr1 231574101 231574400 -11089953 - AluSx SINE Alu -13 299 1 663 225 43 5 chr1 231574401 231574588 -11089765 - L1ME1 LINE L1 -273 5893 5700 721 89 0 0 chr1 231574589 231574679 -11089674 + AluJ/FLAM SINE Alu 2 91 -221 1723 161 7 0 chr1 231575007 231575311 -11089042 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr1 231575751 231575779 -11088574 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr1 231575850 231575878 -11088475 + AT_rich Low_complexity Low_complexity 1 28 0 863 65 0 0 chr1 231575905 231576013 -11088340 - AluSq/x SINE Alu -205 108 1 1524 169 40 7 chr1 231576027 231576299 -11088054 - AluJo SINE Alu -31 281 1 545 101 25 0 chr1 231576717 231576796 -11087557 + MER41-int LTR ERV1 5517 5597 -349 1965 107 21 0 chr1 231576796 231577077 -11087276 + AluSp SINE Alu 1 287 -26 477 0 0 0 chr1 231577661 231577714 -11086639 + (CA)n Simple_repeat Simple_repeat 2 54 0 1702 178 3 0 chr1 231577911 231578209 -11086144 - AluSx SINE Alu -13 299 1 370 321 88 50 chr1 231578277 231578321 -11086032 - L2 LINE L2 -1030 2284 2243 2045 110 7 7 chr1 231578321 231578630 -11085723 - AluSx SINE Alu -3 309 1 370 321 88 50 chr1 231578630 231578925 -11085428 - L2 LINE L2 -1071 2243 1932 2042 108 0 44 chr1 231578996 231579311 -11085042 - AluSx SINE Alu -11 301 1 1763 168 3 13 chr1 231579352 231579667 -11084686 + AluJb SINE Alu 1 312 0 2222 85 0 3 chr1 231579929 231580222 -11084131 + AluSg SINE Alu 5 296 -14 2029 119 3 7 chr1 231580397 231580699 -11083654 + AluSc SINE Alu 1 301 -8 1957 91 46 0 chr1 231580896 231581181 -11083172 - AluSx SINE Alu -14 298 1 1989 106 13 20 chr1 231581813 231582115 -11082238 - AluSx SINE Alu -12 300 1 581 218 113 143 chr1 231582586 231582656 -11081697 - L3 LINE CR1 -155 1422 1351 2483 68 0 0 chr1 231582656 231582965 -11081388 + AluY SINE Alu 1 309 -2 581 218 113 143 chr1 231582965 231583075 -11081278 - L3 LINE CR1 -226 1351 1239 2132 110 0 0 chr1 231583075 231583375 -11080978 + AluSx SINE Alu 1 300 -12 581 218 113 143 chr1 231583375 231583593 -11080760 - L3 LINE CR1 -338 1239 1035 1724 129 68 0 chr1 231583620 231583899 -11080454 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr1 231583899 231583924 -11080429 + AT_rich Low_complexity Low_complexity 1 25 0 2507 45 0 3 chr1 231583929 231584239 -11080114 + AluY SINE Alu 3 311 0 1265 107 0 0 chr1 231584251 231584429 -11079924 + AluSg/x SINE Alu 120 297 -15 635 170 28 0 chr1 231584717 231584823 -11079530 - FLAM_C SINE Alu -33 110 2 2518 58 0 0 chr1 231584922 231585233 -11079120 - AluY SINE Alu 0 311 1 777 196 0 0 chr1 231585243 231585376 -11078977 - FLAM_C SINE Alu 0 133 1 1129 128 0 0 chr1 231585518 231585690 -11078663 + AluSx SINE Alu 1 172 -140 1003 187 0 0 chr1 231585715 231585902 -11078451 + AluJo SINE Alu 122 308 -4 2104 109 0 3 chr1 231585902 231586195 -11078158 + AluSq SINE Alu 1 292 -21 1957 142 3 3 chr1 231586200 231586511 -11077842 + AluSx SINE Alu 1 311 -1 2168 112 3 3 chr1 231586520 231586833 -11077520 + AluSp SINE Alu 1 313 0 2256 94 0 0 chr1 231586836 231587135 -11077218 + AluSg SINE Alu 1 299 -11 317 263 0 12 chr1 231587193 231587273 -11077080 - L2 LINE L2 0 3313 3235 2229 97 0 0 chr1 231587326 231587626 -11076727 + AluSg1 SINE Alu 2 301 -8 943 268 201 44 chr1 231587626 231588028 -11076325 - L2 LINE L2 -68 3245 2907 1956 117 0 32 chr1 231588028 231588336 -11076017 - AluSq SINE Alu -15 298 1 2453 71 0 0 chr1 231588340 231588649 -11075704 - AluSc SINE Alu 0 309 1 943 268 201 44 chr1 231588649 231588950 -11075403 - L2 LINE L2 -408 2905 2434 278 288 55 41 chr1 231588952 231589010 -11075343 + L1M4 LINE L1 2131 2187 -3959 1920 125 3 29 chr1 231589010 231589323 -11075030 + AluSx SINE Alu 1 305 -7 278 288 55 41 chr1 231589323 231589483 -11074870 + L1M4 LINE L1 2187 2352 -3794 2229 53 7 27 chr1 231589670 231589969 -11074384 + AluSx SINE Alu 1 293 -19 3273 158 75 42 chr1 231590885 231591580 -11072773 + LTR8A LTR ERV1 1 718 -9 221 266 92 46 chr1 231591600 231591709 -11072644 - L2 LINE L2 -1426 1888 1775 1770 166 3 0 chr1 231591989 231592284 -11072069 + AluJb SINE Alu 1 296 -16 2082 110 3 0 chr1 231592284 231592574 -11071779 + AluSc SINE Alu 1 291 -18 832 172 7 0 chr1 231592585 231592730 -11071623 + AluSg/x SINE Alu 138 283 -26 584 81 24 65 chr1 231592763 231592786 -11071567 + LTR23 LTR ERV1 188 210 -227 2092 122 0 0 chr1 231592786 231593090 -11071263 + AluSg SINE Alu 1 304 -6 584 81 24 65 chr1 231593090 231593190 -11071163 + LTR23 LTR ERV1 210 306 -131 2135 102 13 7 chr1 231593192 231593496 -11070857 + AluSg SINE Alu 1 306 -4 1916 168 88 100 chr1 231593496 231593681 -11070672 - L1M4 LINE L1 -1416 4730 4544 4382 61 44 10 chr1 231593681 231594268 -11070085 - L1PB1 LINE L1 -7 6144 5538 1916 168 88 100 chr1 231594268 231594749 -11069604 - L1M4 LINE L1 -1602 4544 4072 1804 166 58 0 chr1 231594909 231595235 -11069118 - MER47A DNA MER2_type 0 366 22 2323 88 0 3 chr1 231595243 231595551 -11068802 + AluSg SINE Alu 1 307 -3 434 212 71 0 chr1 231595667 231595752 -11068601 + MER5A DNA MER1_type 61 151 -38 369 163 82 31 chr1 231595668 231595766 -11068587 - MER5A DNA MER1_type -50 139 37 * 190 320 26 26 chr1 231595777 231595855 -11068498 - MIR SINE MIR -119 143 66 1680 170 0 41 chr1 231596172 231596489 -11067864 + AluJo SINE Alu 1 304 -8 220 216 0 0 chr1 231596552 231596603 -11067750 + T-rich Low_complexity Low_complexity 1 51 0 1793 123 3 91 chr1 231596614 231596956 -11067397 + AluSx SINE Alu 1 312 0 2307 90 3 0 chr1 231596966 231597267 -11067086 + AluSx SINE Alu 2 303 -9 1696 174 0 13 chr1 231597412 231597717 -11066636 - AluJo SINE Alu -11 301 1 579 264 126 44 chr1 231597733 231598141 -11066212 - L1ME3A LINE L1 -220 5950 5507 506 237 0 0 chr1 231598557 231598650 -11065703 - FLAM_A SINE Alu -45 97 5 1994 112 14 10 chr1 231598862 231599158 -11065195 + AluSx SINE Alu 11 307 -5 270 0 0 0 chr1 231599916 231599946 -11064407 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 501 141 0 0 chr1 231599960 231600031 -11064322 - AluJ/FLAM SINE Alu -240 72 2 187 261 101 0 chr1 231600328 231600397 -11063956 + L2 LINE L2 2564 2639 -675 1450 164 47 7 chr1 231601659 231601933 -11062420 + AluJo SINE Alu 13 297 -15 2113 100 0 3 chr1 231602327 231602616 -11061737 + AluSq SINE Alu 9 296 -17 828 152 0 0 chr1 231602925 231603063 -11061290 + FLAM_C SINE Alu 6 143 0 1753 133 35 3 chr1 231603312 231603598 -11060755 + AluSx SINE Alu 1 295 -17 1394 136 30 30 chr1 231604028 231604205 -11060148 - MER46A DNA MER2_type -2495 236 57 1923 114 0 29 chr1 231604205 231604511 -11059842 + AluJb SINE Alu 1 297 -15 1394 136 30 30 chr1 231604511 231604569 -11059784 - MER46A DNA MER2_type -2673 58 1 1949 71 0 8 chr1 231604786 231605039 -11059314 + AluY SINE Alu 42 292 -19 499 262 98 89 chr1 231605446 231605885 -11058468 - L1MEd LINE L1 -5284 835 393 664 273 121 9 chr1 231606158 231606389 -11057964 + MIR SINE MIR 6 262 0 1968 80 32 68 chr1 231608818 231609129 -11055224 - AluSg SINE Alu -10 300 1 415 241 54 0 chr1 231609425 231609537 -11054816 + MIR3 SINE MIR 89 206 -2 1566 117 87 15 chr1 231610098 231610363 -11053990 + AluJb SINE Alu 15 298 -14 2225 85 0 3 chr1 231610582 231610875 -11053478 + AluSx SINE Alu 1 292 -20 623 178 151 13 chr1 231610963 231611115 -11053238 + MER3 DNA MER1_type 37 209 0 253 184 20 0 chr1 231611073 231611122 -11053231 - MER3 DNA MER1_type -119 90 41 * 180 0 0 0 chr1 231611398 231611418 -11052935 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1916 127 0 24 chr1 231611420 231611712 -11052641 - AluJb SINE Alu -27 285 1 1532 177 7 26 chr1 231612355 231612665 -11051688 + AluJo SINE Alu 2 305 -7 1641 143 10 20 chr1 231613554 231613847 -11050506 + AluJb SINE Alu 1 290 -22 300 111 0 0 chr1 231613848 231613893 -11050460 + (TG)n Simple_repeat Simple_repeat 2 46 0 2166 90 3 0 chr1 231614592 231614882 -11049471 + AluSq SINE Alu 5 295 -18 1186 102 0 6 chr1 231614882 231615049 -11049304 + AluSg/x SINE Alu 134 299 -13 254 189 19 19 chr1 231616310 231616363 -11047990 - MER5B DNA MER1_type -11 167 115 2228 79 0 3 chr1 231616363 231616654 -11047699 + AluSq SINE Alu 1 290 -23 2400 57 0 0 chr1 231616787 231617088 -11047265 + AluY SINE Alu 1 301 -10 1228 121 0 0 chr1 231617088 231617261 -11047092 + AluSg/x SINE Alu 132 304 -6 1911 99 22 7 chr1 231617275 231617547 -11046806 + AluSx SINE Alu 7 282 -30 615 92 11 0 chr1 231617547 231617634 -11046719 - AluY SINE Alu -16 295 208 261 118 0 0 chr1 231617736 231617770 -11046583 + AluSg/x SINE Alu 168 201 -99 842 190 0 0 chr1 231617770 231617912 -11046441 - AluJo SINE Alu -169 143 2 1841 152 0 7 chr1 231617917 231618219 -11046134 - AluSx SINE Alu -7 305 6 1345 130 105 4 chr1 231618267 231618506 -11045847 + MER21A LTR ERV1 1 263 -668 2175 153 164 38 chr1 231618515 231618966 -11045387 + MER21A LTR ERV1 415 922 -9 318 313 109 16 chr1 231619018 231619210 -11045143 - L1MEc LINE L1 -4312 2084 1875 389 248 18 46 chr1 231619226 231619335 -11045018 - L1MEc LINE L1 -4579 1817 1712 2166 97 0 0 chr1 231619368 231619668 -11044685 - AluY SINE Alu -11 300 1 2022 106 3 33 chr1 231619668 231619970 -11044383 - AluSp SINE Alu -18 295 3 267 162 0 59 chr1 231619980 231620048 -11044305 - L1MB4 LINE L1 0 6183 6119 457 135 0 0 chr1 231620051 231620125 -11044228 - L1MB2 LINE L1 -2 6169 6096 520 165 48 0 chr1 231620126 231620229 -11044124 - L1MB2 LINE L1 -240 5943 5836 207 0 0 0 chr1 231620795 231620818 -11043535 + (T)n Simple_repeat Simple_repeat 1 23 0 304 337 40 0 chr1 231620887 231620988 -11043365 + L1MD1 LINE L1 5715 5819 -1989 2299 92 3 0 chr1 231621024 231621330 -11043023 - AluSg SINE Alu -3 307 1 1473 184 27 20 chr1 231621601 231621894 -11042459 - AluJo SINE Alu -12 300 6 2016 108 0 10 chr1 231622178 231622474 -11041879 - AluSx SINE Alu -15 297 5 1521 105 18 18 chr1 231622705 231622933 -11041420 - Tigger3(Golem) DNA MER2_type -2 3027 2800 364 284 18 18 chr1 231623176 231623345 -11041008 + A-rich Low_complexity Low_complexity 2 170 0 1119 95 0 24 chr1 231623351 231623520 -11040833 - AluY SINE Alu -146 165 1 2069 114 0 7 chr1 231624166 231624464 -11039889 - AluSg SINE Alu -14 296 1 1907 125 6 41 chr1 231624880 231625200 -11039153 - AluJb SINE Alu -3 309 1 2094 68 7 34 chr1 231625576 231625893 -11038460 - AluSp SINE Alu 0 309 1 1083 198 32 16 chr1 231627075 231627322 -11037031 + L1MD1 LINE L1 5992 6242 0 2240 102 0 0 chr1 231627329 231627634 -11036719 + AluSq SINE Alu 1 305 -8 25 0 0 0 chr1 231627748 231627773 -11036580 + AT_rich Low_complexity Low_complexity 1 25 0 1684 74 7 78 chr1 231627929 231628199 -11036154 + AluSg SINE Alu 56 306 -4 27 62 0 0 chr1 231628979 231629027 -11035326 + AT_rich Low_complexity Low_complexity 1 48 0 894 107 8 8 chr1 231629077 231629208 -11035145 + AluSq/x SINE Alu 4 134 -178 1884 142 0 3 chr1 231629208 231629496 -11034857 + AluSx SINE Alu 1 287 -25 65 35 0 0 chr1 231629785 231629871 -11034482 + AT_rich Low_complexity Low_complexity 1 86 0 654 172 0 35 chr1 231629877 231629993 -11034360 - FLAM_C SINE Alu -30 113 2 851 169 7 0 chr1 231630085 231630227 -11034126 - FRAM SINE Alu -19 147 5 2175 115 0 0 chr1 231630446 231630750 -11033603 + AluSx SINE Alu 1 304 -8 2094 122 3 0 chr1 231630758 231631061 -11033292 + AluSx SINE Alu 1 304 -8 2208 110 3 0 chr1 231631069 231631370 -11032983 + AluSp SINE Alu 1 302 -11 2207 109 0 0 chr1 231632713 231633007 -11031346 + AluSx SINE Alu 2 295 -17 2056 122 0 0 chr1 231633441 231633744 -11030609 + AluSq SINE Alu 1 303 -10 282 116 0 0 chr1 231633745 231633788 -11030565 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2040 101 4 0 chr1 231633789 231634098 -11030255 + AluSc SINE Alu 1 310 0 3186 132 76 41 chr1 231634187 231634381 -11029972 - LTR9 LTR ERV1 -1 611 425 2342 78 0 0 chr1 231634381 231634687 -11029666 - AluY SINE Alu -5 306 1 2078 106 10 0 chr1 231634688 231634981 -11029372 - AluSx SINE Alu -16 296 1 3186 132 76 41 chr1 231634981 231635374 -11028979 - LTR9 LTR ERV1 -186 426 1 1908 125 10 3 chr1 231635784 231636081 -11028272 + AluSx SINE Alu 1 299 -13 1043 265 98 73 chr1 231636807 231637642 -11026711 - L2 LINE L2 -224 3089 2246 194 322 87 9 chr1 231637670 231637785 -11026568 - L2 LINE L2 -1154 2160 2037 2014 108 7 19 chr1 231637789 231637925 -11026428 + AluSx SINE Alu 1 137 -175 2232 103 3 0 chr1 231637925 231638237 -11026116 + AluSp SINE Alu 1 313 0 2014 108 7 19 chr1 231638237 231638407 -11025946 + AluSx SINE Alu 137 303 -9 227 143 41 41 chr1 231638935 231638984 -11025369 + MER58 DNA MER1_type 2318 2366 -54 2264 79 3 0 chr1 231639892 231640182 -11024171 - AluSq SINE Alu -22 291 1 2054 125 0 13 chr1 231640188 231640500 -11023853 - AluSx SINE Alu -4 308 1 2215 100 3 3 chr1 231641004 231641303 -11023050 - AluSx SINE Alu -13 299 1 1146 147 60 83 chr1 231641332 231641598 -11022755 - AluJo SINE Alu -48 264 5 1972 106 0 43 chr1 231641814 231641948 -11022405 + AluSx SINE Alu 12 150 -162 2358 63 0 3 chr1 231641948 231642248 -11022105 + AluSc SINE Alu 1 299 -10 1972 106 0 43 chr1 231642248 231642414 -11021939 + AluSx SINE Alu 150 299 -13 2134 93 7 0 chr1 231642634 231642924 -11021429 - AluSc SINE Alu -17 292 1 2152 104 0 0 chr1 231643507 231643805 -11020548 - AluSx SINE Alu -14 298 1 290 301 57 53 chr1 231643910 231644119 -11020234 - L1ME3A LINE L1 -230 5940 5731 539 261 54 0 chr1 231644283 231644413 -11019940 + MIR SINE MIR 4 140 -122 1310 169 0 13 chr1 231644421 231644646 -11019707 + L1MB3 LINE L1 5686 5907 -276 2164 104 0 16 chr1 231644648 231644966 -11019387 + AluSq SINE Alu 1 313 0 1051 178 244 122 chr1 231645014 231645474 -11018879 - MER119 DNA MER1_type -1 582 67 260 325 110 26 chr1 231645722 231645876 -11018477 - MIR SINE MIR -62 200 34 1236 164 0 59 chr1 231646176 231646414 -11017939 - AluJb SINE Alu -2 310 87 2171 126 0 3 chr1 231646534 231646844 -11017509 - AluSx SINE Alu -3 309 1 635 154 103 8 chr1 231647448 231647565 -11016788 + FLAM_C SINE Alu 1 128 -5 225 65 0 0 chr1 231647565 231647596 -11016757 + (CAATA)n Simple_repeat Simple_repeat 2 32 0 352 310 9 9 chr1 231647597 231647710 -11016643 - MER5B DNA MER1_type -64 114 2 2177 111 0 3 chr1 231648574 231648881 -11015472 + AluSx SINE Alu 1 306 -6 254 29 29 0 chr1 231648906 231648941 -11015412 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2154 111 0 3 chr1 231649047 231649345 -11015008 - AluSx SINE Alu -10 302 6 947 204 0 32 chr1 231649348 231649569 -11014784 - AluJo SINE Alu -11 301 88 2164 100 3 0 chr1 231649627 231649916 -11014437 + AluSp SINE Alu 1 290 -23 594 145 0 0 chr1 231650119 231650202 -11014151 + AluS SINE Alu 2 84 -229 1584 179 4 0 chr1 231650203 231650466 -11013887 + AluSx SINE Alu 4 267 -45 2187 101 0 10 chr1 231650845 231651151 -11013202 - AluSq SINE Alu -10 303 1 2168 99 13 0 chr1 231651888 231652192 -11012161 - AluSp SINE Alu -5 308 1 886 167 10 93 chr1 231652201 231652405 -11011948 - AluJo SINE Alu -9 303 117 241 141 28 0 chr1 231652422 231652493 -11011860 + (TA)n Simple_repeat Simple_repeat 2 74 0 26 0 0 0 chr1 231652493 231652519 -11011834 + AT_rich Low_complexity Low_complexity 1 26 0 717 98 134 0 chr1 231652519 231652631 -11011722 - AluJo SINE Alu -175 127 1 1816 139 11 0 chr1 231652658 231652945 -11011408 - AluSx SINE Alu -22 290 1 318 167 0 24 chr1 231652948 231653032 -11011321 - L1M LINE L1 -2702 5340 5259 569 217 14 56 chr1 231653092 231653235 -11011118 - LTR45 LTR ERV1 0 525 389 1700 149 0 32 chr1 231653264 231653573 -11010780 - AluSx SINE Alu -7 305 7 32 0 0 0 chr1 231753596 231753628 -10910725 + AT_rich Low_complexity Low_complexity 1 32 0 865 138 0 0 chr1 231753628 231753744 -10910609 - FLAM_C SINE Alu -17 116 1 476 308 60 39 chr1 231753878 231754060 -10910293 - MER91A DNA MER1_type -10 186 1 2077 108 10 10 chr1 231754128 231754423 -10909930 - AluSq SINE Alu -18 295 1 206 238 88 12 chr1 231755371 231755451 -10908902 - L3 LINE CR1 -840 737 652 * 842 275 133 13 chr1 231755426 231755742 -10908611 - L2 LINE L2 -3 3310 2957 611 256 112 37 chr1 231755941 231756210 -10908143 - L2 LINE L2 -848 2466 2178 329 281 0 11 chr1 231756212 231756301 -10908052 + MER3 DNA MER1_type 1 88 -121 260 196 0 0 chr1 231756282 231756333 -10908020 - MER3 DNA MER1_type -118 91 41 * 1701 272 104 47 chr1 231756333 231756555 -10907798 - L2 LINE L2 -1138 2176 1968 1872 159 10 0 chr1 231756555 231756850 -10907503 + AluSx SINE Alu 4 301 -11 1701 272 104 47 chr1 231756850 231757413 -10906940 - L2 LINE L2 -1346 1968 1346 431 335 171 40 chr1 231757410 231757984 -10906369 - L3 LINE CR1 -928 649 1 * 995 97 0 0 chr1 231758207 231758331 -10906022 - AluJb SINE Alu -188 124 1 812 120 0 183 chr1 231758471 231758662 -10905691 - AluSg/x SINE Alu -20 290 135 1888 122 7 44 chr1 231758719 231759013 -10905340 + AluSx SINE Alu 2 347 0 392 48 16 16 chr1 231759013 231759076 -10905277 + (TAAAA)n Simple_repeat Simple_repeat 2 90 0 212 317 250 0 chr1 231759353 231759473 -10904880 - L2 LINE L2 -91 3181 3032 457 321 100 7 chr1 231759706 231759846 -10904507 - MER5B DNA MER1_type -25 153 1 355 418 55 6 chr1 231759854 231760184 -10904169 - L2 LINE L2 -555 2759 2414 246 332 119 73 chr1 231760427 231760594 -10903759 - L2 LINE L2 -1505 1809 1651 774 161 130 47 chr1 231760594 231760786 -10903567 - MER63A DNA MER1_type -2 208 1 246 332 119 73 chr1 231760786 231761665 -10902688 - L2 LINE L2 -1663 1651 714 475 287 0 25 chr1 231761692 231761814 -10902539 + L2 LINE L2 3192 3310 -3 32 43 0 0 chr1 231762449 231762495 -10901858 + AT_rich Low_complexity Low_complexity 1 46 0 341 271 139 14 chr1 231763540 231763684 -10900669 - MIR3 SINE MIR -6 202 41 3407 222 106 14 chr1 231764184 231765245 -10899108 + L1PB1 LINE L1 6 1163 -5700 15640 183 18 13 chr1 231765268 231770770 -10893583 + L1PB1 LINE L1 1297 6865 -2 32 26 0 0 chr1 231770842 231770881 -10893472 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr1 231771912 231771934 -10892419 + AT_rich Low_complexity Low_complexity 1 22 0 203 212 74 9 chr1 231771995 231772060 -10892293 - MIR SINE MIR -56 152 86 728 254 48 24 chr1 231773351 231773560 -10890793 - MIR SINE MIR -7 255 42 189 260 100 40 chr1 231773590 231773690 -10890663 + L2 LINE L2 2346 2451 -863 541 246 49 26 chr1 231773740 231773943 -10890410 + MIR SINE MIR 56 261 -1 21 0 0 0 chr1 231774837 231774858 -10889495 + AT_rich Low_complexity Low_complexity 1 21 0 327 328 79 51 chr1 231775534 231775711 -10888642 + MIR3 SINE MIR 16 197 -11 1749 96 0 9 chr1 231776147 231776377 -10887976 - AluSg/x SINE Alu -8 304 77 238 271 0 0 chr1 231776377 231776425 -10887928 + MER94 DNA DNA 82 129 -5 582 292 39 35 chr1 231776607 231776867 -10887486 - L2 LINE L2 -1028 2286 2026 453 148 0 0 chr1 231776911 231776992 -10887361 + (CA)n Simple_repeat Simple_repeat 2 82 0 298 337 92 15 chr1 231777155 231777351 -10887002 + L2 LINE L2 549 759 -2555 458 258 62 72 chr1 231777359 231777597 -10886756 + MIR SINE MIR 17 262 0 400 337 153 34 chr1 231778095 231778656 -10885697 + L2 LINE L2 1177 1804 -1510 305 306 56 77 chr1 231779134 231779330 -10885023 - L3 LINE CR1 -1200 377 186 3018 142 33 8 chr1 231779379 231779866 -10884487 - L1MC1 LINE L1 0 6333 5835 672 204 33 13 chr1 231779875 231779893 -10884460 - L1MA10 LINE L1 -3 6331 6314 1020 239 33 69 chr1 231779893 231780282 -10884071 - L1ME1 LINE L1 -12 6154 5780 729 202 23 0 chr1 231780868 231780997 -10883356 - FLAM_A SINE Alu -1 132 1 1333 152 36 48 chr1 231781172 231781491 -10882862 + LTR54 LTR ERV1 1 374 -136 965 161 32 0 chr1 231781491 231781646 -10882707 + Tigger7 DNA MER2_type 1 160 -573 483 157 0 0 chr1 231781647 231781717 -10882636 + Tigger7 DNA MER2_type 2401 2470 -21 2072 123 0 0 chr1 231781720 231782005 -10882348 + AluSx SINE Alu 1 285 -27 384 40 0 0 chr1 231782005 231782055 -10882298 + (CA)n Simple_repeat Simple_repeat 2 51 0 839 153 29 0 chr1 231782078 231782215 -10882138 + LTR54 LTR ERV1 370 510 0 1853 132 4 4 chr1 231782317 231782598 -10881755 + AluY SINE Alu 1 281 -30 451 68 0 0 chr1 231782598 231782657 -10881696 - U5 snRNA snRNA -57 59 1 3344 114 19 2 chr1 231783030 231783505 -10880848 + MER31A LTR ERV1 1 483 -2 1258 251 134 55 chr1 231783539 231783856 -10880497 + L2 LINE L2 2356 2647 -666 1621 180 27 17 chr1 231783856 231784151 -10880202 + AluJb SINE Alu 1 298 -14 1258 251 134 55 chr1 231784151 231784716 -10879637 + L2 LINE L2 2647 3309 -4 312 277 149 59 chr1 231785782 231786104 -10878249 + L1M2 LINE L1 854 1216 -5633 180 77 0 0 chr1 231786104 231786130 -10878223 + (CCG)n Simple_repeat Simple_repeat 3 28 0 312 277 149 59 chr1 231786130 231786182 -10878171 + L1M2 LINE L1 1216 1262 -5587 617 100 0 0 chr1 231787366 231787456 -10876897 - Alu SINE Alu 0 311 222 287 261 0 15 chr1 231787497 231787562 -10876791 - L2 LINE L2 -2 3270 3207 2157 125 3 0 chr1 231787898 231788201 -10876152 - AluSx SINE Alu -8 304 1 2439 65 0 7 chr1 231788397 231788703 -10875650 + AluY SINE Alu 1 304 -7 895 262 71 23 chr1 231788900 231789235 -10875118 + L2 LINE L2 2705 3052 -261 426 241 20 133 chr1 231789236 231789406 -10874947 + Zaphod DNA AcHobo 2 147 -3884 2577 148 25 0 chr1 231789406 231789799 -10874554 + MER57A LTR ERV1 1 403 0 426 241 20 133 chr1 231789799 231789831 -10874522 + Zaphod DNA AcHobo 147 181 -3850 701 217 28 44 chr1 231789831 231790011 -10874342 + L2 LINE L2 3123 3299 -14 1121 237 98 89 chr1 231790494 231791034 -10873319 + MER41C LTR ERV1 1 545 -9 3023 168 65 71 chr1 231791098 231791220 -10873133 - MER39 LTR ERV1 0 682 561 2202 134 0 0 chr1 231791220 231791526 -10872827 + AluSx SINE Alu 1 306 -6 3023 168 65 71 chr1 231791526 231791856 -10872497 - MER39 LTR ERV1 -121 561 248 2081 106 21 3 chr1 231791856 231792138 -10872215 + AluSx SINE Alu 12 298 -14 3023 168 65 71 chr1 231792138 231792385 -10871968 - MER39 LTR ERV1 -434 248 1 240 297 51 59 chr1 231793623 231793741 -10870612 - L2 LINE L2 -171 3101 2985 599 211 173 0 chr1 231794150 231794283 -10870070 + MER5A DNA MER1_type 21 176 -13 193 231 77 31 chr1 231794298 231794363 -10869990 - L2 LINE L2 -307 2965 2898 1177 120 71 5 chr1 231794855 231795070 -10869283 + AluJo SINE Alu 86 312 0 1990 141 3 17 chr1 231795144 231795443 -10868910 + AluSg SINE Alu 1 295 -15 2256 97 7 0 chr1 231796612 231796912 -10867441 - AluSp SINE Alu -11 302 1 180 0 0 0 chr1 231797062 231797082 -10867271 + (A)n Simple_repeat Simple_repeat 1 20 0 853 121 8 0 chr1 231798095 231798219 -10866134 - L1PB4 LINE L1 -3 6153 6029 846 203 7 13 chr1 231798223 231798376 -10865977 - FRAM SINE Alu -24 152 1 2435 95 0 0 chr1 231798935 231799241 -10865112 - AluSx SINE Alu -4 308 3 1519 96 0 0 chr1 231800050 231800247 -10864106 + AluSq SINE Alu 1 197 -116 187 219 233 27 chr1 231800248 231800321 -10864032 - MIR SINE MIR -89 119 32 2273 172 29 51 chr1 231800647 231801255 -10863098 + L1MB3 LINE L1 5608 6173 -10 294 138 0 0 chr1 231801257 231801315 -10863038 + (CA)n Simple_repeat Simple_repeat 1 58 0 453 332 97 30 chr1 231801320 231801821 -10862532 - L2 LINE L2 -190 3082 2551 1391 186 77 7 chr1 231803168 231803328 -10861025 - AluJo SINE Alu -19 293 105 2763 3 0 3 chr1 231803328 231803627 -10860726 - AluYa5 SINE Alu -12 299 2 1391 186 77 7 chr1 231803627 231803740 -10860613 - AluJo SINE Alu -207 105 1 22 0 0 0 chr1 231803883 231803905 -10860448 + AT_rich Low_complexity Low_complexity 1 22 0 1643 152 8 4 chr1 231803996 231804260 -10860093 - AluJo SINE Alu -9 303 39 511 282 115 14 chr1 231804298 231804507 -10859846 - MIR SINE MIR -32 230 1 229 86 0 0 chr1 231804544 231804579 -10859774 + L2 LINE L2 3273 3307 -6 2391 83 3 3 chr1 231805770 231806071 -10858282 + AluSp SINE Alu 1 301 -12 496 309 42 27 chr1 231806499 231806758 -10857595 + L3 LINE CR1 702 964 -613 477 294 100 86 chr1 231806999 231807180 -10857173 + L3 LINE CR1 1011 1188 -389 897 156 0 15 chr1 231807180 231807315 -10857038 + FLAM_C SINE Alu 1 133 0 477 294 100 86 chr1 231807315 231807494 -10856859 + L3 LINE CR1 1188 1376 -201 3320 159 25 0 chr1 231807661 231808220 -10856133 + L1MB3 LINE L1 5565 6137 -46 2363 106 0 0 chr1 231808226 231808845 -10855508 + AluSx SINE Alu 1 619 0 261 0 0 0 chr1 231808850 231808879 -10855474 + (A)n Simple_repeat Simple_repeat 1 29 0 1879 147 0 14 chr1 231808897 231809190 -10855163 + AluJb SINE Alu 10 298 -14 2179 99 0 0 chr1 231809190 231809474 -10854879 + AluSx SINE Alu 1 284 -28 369 0 0 0 chr1 231809481 231809522 -10854831 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 617 264 145 22 chr1 231810199 231810426 -10853927 - MIR SINE MIR 0 262 8 2931 9 0 0 chr1 231810504 231810820 -10853533 - AluYb8 SINE Alu -2 316 1 1195 190 63 16 chr1 231810870 231811123 -10853230 + L1MD3 LINE L1 7730 7994 -1 354 211 240 10 chr1 231812770 231812874 -10851479 + MIR SINE MIR 21 148 -60 359 269 115 0 chr1 231813262 231813394 -10850959 + MIR SINE MIR 11 161 -62 261 0 0 0 chr1 231813568 231813597 -10850756 + (TA)n Simple_repeat Simple_repeat 1 29 0 2473 75 3 0 chr1 231813597 231813903 -10850450 - AluSp SINE Alu -6 307 1 26 0 0 0 chr1 231813913 231813939 -10850414 + AT_rich Low_complexity Low_complexity 1 26 0 383 0 21 0 chr1 231813956 231814003 -10850350 + (CA)n Simple_repeat Simple_repeat 2 49 0 2246 99 7 10 chr1 231814008 231814311 -10850042 - AluSq SINE Alu -11 302 1 1564 128 5 0 chr1 231814315 231814533 -10849820 - L1PA15 LINE L1 -9 6156 5938 282 242 0 0 chr1 231814534 231814596 -10849757 + L1PA15 LINE L1 5859 5920 -250 591 214 21 14 chr1 231814601 231814746 -10849607 + L1ME3A LINE L1 6022 6167 -3 687 140 9 0 chr1 231814754 231814868 -10849485 + L1MA5A LINE L1 6179 6293 -4 2458 80 0 6 chr1 231814927 231815239 -10849114 + AluY SINE Alu 1 310 -1 332 260 130 17 chr1 231815240 231815417 -10848936 - L1ME4a LINE L1 -50 6071 5875 392 267 127 23 chr1 231815456 231815677 -10848676 - L1ME4a LINE L1 -422 5699 5456 1978 139 41 0 chr1 231815710 231815833 -10848520 + AluJb SINE Alu 1 118 -194 198 0 0 0 chr1 231815833 231815855 -10848498 + (CA)n Simple_repeat Simple_repeat 2 23 0 1978 139 41 0 chr1 231815855 231816026 -10848327 + AluJb SINE Alu 118 307 -5 251 174 0 0 chr1 231816087 231816133 -10848220 + MIR SINE MIR 111 156 -106 200 314 58 52 chr1 231816178 231816267 -10848086 + L2 LINE L2 2625 2712 -602 2527 137 48 19 chr1 231816267 231816683 -10847670 + MSTA LTR MaLR 1 428 0 200 314 58 52 chr1 231816683 231816784 -10847569 + L2 LINE L2 2712 2816 -498 1403 168 79 34 chr1 231816878 231817031 -10847322 - AluJo SINE Alu -3 309 164 2273 99 3 0 chr1 231817031 231817324 -10847029 - AluSp SINE Alu -19 294 1 1403 168 79 34 chr1 231817324 231817462 -10846891 - AluJo SINE Alu -148 164 5 596 259 162 43 chr1 231817480 231817832 -10846521 + L2 LINE L2 2913 3306 -7 2038 156 51 34 chr1 231817832 231818179 -10846174 + LTR24C LTR ERV1 1 332 -135 2584 69 0 0 chr1 231818179 231818485 -10845868 - AluY SINE Alu -5 306 1 2038 156 51 34 chr1 231818485 231818624 -10845729 + LTR24C LTR ERV1 332 467 0 493 313 87 87 chr1 231818969 231819159 -10845194 - L2 LINE L2 0 3272 3083 2074 123 6 38 chr1 231819159 231819476 -10844877 + AluSx SINE Alu 2 308 -4 493 313 87 87 chr1 231819476 231819497 -10844856 - L2 LINE L2 -189 3083 3063 2470 61 30 0 chr1 231819497 231819794 -10844559 + AluY SINE Alu 1 306 -5 493 313 87 87 chr1 231819794 231819828 -10844525 - L2 LINE L2 -209 3063 3030 186 43 0 0 chr1 231819828 231819851 -10844502 + (GGA)n Simple_repeat Simple_repeat 2 24 0 493 313 87 87 chr1 231819851 231820050 -10844303 - L2 LINE L2 -241 3031 2826 183 80 0 0 chr1 231820325 231820350 -10844003 + (GA)n Simple_repeat Simple_repeat 2 26 0 719 233 89 16 chr1 231820696 231820954 -10843399 + LTR16A1 LTR ERVL 181 457 0 192 296 102 11 chr1 231822408 231822496 -10841857 - MIR SINE MIR -65 143 48 5350 72 8 1 chr1 231822923 231823571 -10840782 + L1PA8 LINE L1 5518 6169 -3 2363 96 0 0 chr1 231823672 231823973 -10840380 - AluSq SINE Alu -12 301 1 412 337 31 96 chr1 231824012 231824273 -10840080 - L2 LINE L2 -11 3261 3018 1817 154 14 20 chr1 231824292 231824585 -10839768 - AluJo SINE Alu -21 291 1 658 190 25 100 chr1 231824634 231824834 -10839519 + MLT1D LTR MaLR 1 185 -320 2238 116 0 3 chr1 231824840 231825150 -10839203 + AluSx SINE Alu 1 309 -3 930 130 68 7 chr1 231825158 231825304 -10839049 + FRAM SINE Alu 1 155 -21 1501 163 93 7 chr1 231825324 231825624 -10838729 + MLT1D LTR MaLR 180 505 0 259 292 10 52 chr1 231825624 231825720 -10838633 - MIR SINE MIR -151 111 20 505 326 34 11 chr1 231825932 231826110 -10838243 + MIR3 SINE MIR 19 200 -8 541 236 136 20 chr1 231827189 231827388 -10836965 + MIR SINE MIR 29 250 -12 2040 144 3 0 chr1 231827393 231827685 -10836668 - AluSx SINE Alu -16 296 4 221 335 192 17 chr1 231827811 231828160 -10836193 + L2 LINE L2 2392 2801 -513 557 301 40 77 chr1 231828378 231828754 -10835599 - L2 LINE L2 -3 3269 2908 237 160 13 120 chr1 231828810 231828833 -10835520 + L1MA8 LINE L1 6223 6247 -44 2337 56 3 0 chr1 231828833 231829121 -10835232 + AluY SINE Alu 21 309 -2 237 160 13 120 chr1 231829121 231829172 -10835181 + L1MA8 LINE L1 6247 6289 -2 282 254 123 23 chr1 231829172 231829302 -10835051 - L2 LINE L2 -463 2851 2709 564 245 98 22 chr1 231830307 231830491 -10833862 + MIR SINE MIR 23 220 -42 2037 93 0 4 chr1 231831776 231832035 -10832318 - AluSx SINE Alu -50 262 5 681 228 30 12 chr1 231832044 231832211 -10832142 - MIR SINE MIR -66 196 27 322 245 38 75 chr1 231832484 231832590 -10831763 - MER112 DNA MER1_type -6 254 153 301 287 9 17 chr1 231832601 231832716 -10831637 + MLT1L LTR MaLR 498 611 -4 517 282 99 30 chr1 231832721 231832983 -10831370 + L1ME LINE L1 5539 5818 -303 1866 127 42 0 chr1 231833015 231833299 -10831054 + AluSx SINE Alu 1 296 -16 297 237 79 53 chr1 231833389 231833503 -10830850 + L1MC4a LINE L1 7092 7208 -600 730 258 108 11 chr1 231833509 231833777 -10830576 + L1MC4 LINE L1 7313 7606 -436 603 184 61 6 chr1 231833781 231833944 -10830409 - Charlie5 DNA MER1_type 0 2624 2453 775 232 27 55 chr1 231834074 231834294 -10830059 + MLT1A2 LTR MaLR 1 214 -160 2027 137 0 0 chr1 231834298 231834617 -10829736 + AluSx SINE Alu 1 319 0 909 75 0 0 chr1 231834621 231834728 -10829625 + U6 snRNA snRNA 1 107 0 4060 54 13 2 chr1 231834728 231835322 -10829031 + L1PA7 LINE L1 5662 6260 0 501 47 0 0 chr1 231835322 231835386 -10828967 + (CGA)n Simple_repeat Simple_repeat 1 64 0 698 241 6 19 chr1 231835394 231835552 -10828801 + MLT1A2 LTR MaLR 215 370 -4 532 230 77 68 chr1 231835557 231835805 -10828548 + L1MC4 LINE L1 7781 8030 -12 2409 69 20 3 chr1 231835806 231836110 -10828243 - AluSc SINE Alu 0 309 1 230 291 139 12 chr1 231836300 231836386 -10827967 - MIR SINE MIR -10 252 156 434 269 15 46 chr1 231836508 231836638 -10827715 - MIR SINE MIR -110 152 27 31 44 0 0 chr1 231837081 231837126 -10827227 + AT_rich Low_complexity Low_complexity 1 45 0 281 223 43 11 chr1 231838670 231838737 -10825616 + CT-rich Low_complexity Low_complexity 2 74 -24 3369 176 41 8 chr1 231838737 231839378 -10824975 - L1MB5 LINE L1 0 6174 5513 281 223 43 11 chr1 231839378 231839404 -10824949 + CT-rich Low_complexity Low_complexity 74 98 0 285 185 98 33 chr1 231840026 231840118 -10824235 + MER5A DNA MER1_type 44 141 -48 312 70 0 0 chr1 231840333 231840376 -10823977 + (CA)n Simple_repeat Simple_repeat 2 44 0 252 305 26 70 chr1 231840514 231840621 -10823732 - MIR SINE MIR -54 154 77 2457 153 64 9 chr1 231840621 231841060 -10823293 + MLT1C LTR MaLR 3 465 -2 252 305 26 70 chr1 231841060 231841095 -10823258 - MIR SINE MIR -131 77 42 293 289 0 48 chr1 231841434 231841538 -10822815 + MIR SINE MIR 77 175 -87 248 315 39 56 chr1 231841589 231841767 -10822586 - MER5B DNA MER1_type -2 176 2 321 238 0 0 chr1 231841998 231842099 -10822254 + (CA)n Simple_repeat Simple_repeat 1 101 0 1102 174 6 6 chr1 231843204 231843382 -10820971 - MER45A DNA AcHobo 0 178 1 215 173 96 0 chr1 231843401 231843453 -10820900 + L3 LINE CR1 1423 1479 -98 229 65 0 0 chr1 231844127 231844173 -10820180 - LTR66 LTR ERVL -171 439 394 337 235 47 0 chr1 231844185 231844270 -10820083 - L1MC4 LINE L1 -1339 6703 6615 2137 110 0 20 chr1 231844790 231845091 -10819262 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr1 231845280 231845306 -10819047 + AT_rich Low_complexity Low_complexity 1 26 0 6389 97 12 14 chr1 231845306 231845875 -10818478 - L1PB3 LINE L1 -2 6152 5583 2434 93 3 0 chr1 231845875 231846187 -10818166 + AluSp SINE Alu 1 313 0 6389 97 12 14 chr1 231846187 231846890 -10817463 - L1PB3 LINE L1 -571 5583 4907 32 0 0 0 chr1 231846898 231846930 -10817423 + AT_rich Low_complexity Low_complexity 1 32 0 244 252 54 54 chr1 231847815 231847926 -10816427 + L1ME LINE L1 5713 5823 -347 405 313 109 43 chr1 231848162 231848510 -10815843 + L1MC/D LINE L1 4078 4448 -1698 309 245 99 82 chr1 231848532 231848787 -10815566 + L1MC/D LINE L1 5645 5906 -311 976 255 102 30 chr1 231848973 231849346 -10815007 + HsTC2a DNA Tc2 27 426 -318 277 176 197 10 chr1 231849343 231849446 -10814907 + HsTC2a DNA Tc2 619 740 -2 * 26 50 0 0 chr1 231850511 231850551 -10813802 + AT_rich Low_complexity Low_complexity 1 40 0 235 311 94 9 chr1 231851617 231851723 -10812630 - MIR3 SINE MIR -2 206 92 1909 148 7 7 chr1 231852107 231852397 -10811956 - AluSx SINE Alu -22 290 1 24 0 0 0 chr1 231852448 231852472 -10811881 + AT_rich Low_complexity Low_complexity 1 24 0 787 223 34 9 chr1 231852620 231852853 -10811500 + L1M4 LINE L1 4372 4610 -1536 1191 173 4 17 chr1 231852868 231853099 -10811254 - L1MB8 LINE L1 -6 6172 5945 1002 197 34 13 chr1 231853200 231853433 -10810920 - L1MB8 LINE L1 -673 5491 5254 1929 145 0 16 chr1 231853934 231854238 -10810115 - AluSx SINE Alu -13 299 1 2914 194 100 39 chr1 231854274 231854352 -10810001 - L1ME2 LINE L1 -1 6163 6091 1877 154 0 7 chr1 231854352 231854637 -10809716 + AluJb SINE Alu 16 298 -14 2914 194 100 39 chr1 231854637 231855310 -10809043 - L1ME2 LINE L1 -73 6091 5366 * 3809 214 55 19 chr1 231855292 231856258 -10808095 - L1ME2 LINE L1 -1302 4844 3836 2218 103 0 3 chr1 231856258 231856579 -10807774 - AluSg SINE Alu 0 321 2 3809 214 55 19 chr1 231856579 231856638 -10807715 - L1ME2 LINE L1 -2310 3836 3781 348 336 49 1 chr1 231856754 231856891 -10807462 + MIR3 SINE MIR 39 181 -27 335 368 199 9 chr1 231857338 231857680 -10806673 - L2 LINE L2 -5 3267 2861 1253 237 144 34 chr1 231858199 231858645 -10805708 - MLT1H LTR MaLR 0 549 15 873 214 112 11 chr1 231859512 231859699 -10804654 + MER58C DNA MER1_type 10 215 0 1658 183 3 33 chr1 231859856 231860162 -10804191 - AluJb SINE Alu -13 299 3 2035 160 0 3 chr1 231860649 231860962 -10803391 + AluJb SINE Alu 1 312 0 203 269 0 0 chr1 231861215 231861267 -10803086 + L2 LINE L2 3262 3313 0 2333 80 3 3 chr1 231861374 231861674 -10802679 + AluY SINE Alu 1 300 -11 267 284 12 80 chr1 231862990 231863152 -10801201 + L2 LINE L2 2750 2900 -414 5966 100 46 3 chr1 231863439 231864557 -10799796 - L1PA15 LINE L1 -3 6162 5019 2881 181 16 26 chr1 231864557 231864850 -10799503 - L1 LINE L1 -1307 4839 4545 2110 119 3 7 chr1 231864850 231865160 -10799193 - AluSc SINE Alu 0 309 1 2376 91 3 0 chr1 231865161 231865469 -10798884 - AluSc SINE Alu 0 309 1 2881 181 16 26 chr1 231865469 231865788 -10798565 - L1 LINE L1 -1600 4546 4231 686 299 120 21 chr1 231865824 231866149 -10798204 + L2 LINE L2 2956 3312 -1 755 353 104 26 chr1 231866546 231867382 -10796971 + L2 LINE L2 1754 2654 -660 191 139 28 0 chr1 231867736 231867772 -10796581 + L2 LINE L2 3269 3305 -8 22 0 0 0 chr1 231867799 231867821 -10796532 + AT_rich Low_complexity Low_complexity 1 22 0 2120 123 0 10 chr1 231868796 231869098 -10795255 - AluSx SINE Alu -13 299 1 21 36 0 0 chr1 231869301 231869329 -10795024 + AT_rich Low_complexity Low_complexity 1 28 0 287 224 12 94 chr1 231869731 231869816 -10794537 - L2 LINE L2 0 3313 3236 2171 129 0 3 chr1 231870148 231870458 -10793895 - AluSx SINE Alu -3 309 1 301 284 117 18 chr1 231873205 231873427 -10790926 + L1ME4a LINE L1 5724 5967 -154 29 28 0 0 chr1 231873455 231873491 -10790862 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 231873608 231873629 -10790724 + AT_rich Low_complexity Low_complexity 1 21 0 317 158 82 0 chr1 231875610 231875768 -10788585 + (TA)n Simple_repeat Simple_repeat 2 172 0 251 226 16 16 chr1 231875848 231875910 -10788443 + LTR16A1 LTR ERVL 8 69 -388 714 195 24 18 chr1 231876008 231876172 -10788181 + LTR16A1 LTR ERVL 235 399 -58 23 0 0 0 chr1 231876572 231876595 -10787758 + AT_rich Low_complexity Low_complexity 1 23 0 298 278 67 24 chr1 231878641 231878849 -10785504 - L2 LINE L2 -87 3226 2955 2396 94 0 0 chr1 231879099 231879406 -10784947 - AluSg SINE Alu -3 307 1 2019 134 33 10 chr1 231881070 231881375 -10782978 + AluJo SINE Alu 1 312 0 315 259 95 51 chr1 231881426 231881584 -10782769 - MIR SINE MIR -50 212 48 2252 147 24 44 chr1 231881736 231882192 -10782161 - L1MC4a LINE L1 -362 7446 7000 240 266 85 11 chr1 231882196 231882290 -10782063 - HAL1 LINE L1 -1120 1387 1287 * 1627 120 71 84 chr1 231882287 231882654 -10781699 - L1MB8 LINE L1 -3 6175 5814 844 105 8 0 chr1 231882711 231882835 -10781518 - AluSp/q SINE Alu 0 313 189 878 191 41 0 chr1 231882844 231883038 -10781315 - L1MC2 LINE L1 -10 6334 6133 1137 147 54 15 chr1 231883038 231883242 -10781111 - L1MC3 LINE L1 -199 7586 7375 2239 176 21 19 chr1 231883243 231883836 -10780517 - L1MB8 LINE L1 -732 5448 4855 1122 158 37 0 chr1 231883835 231884025 -10780328 - L1MC3 LINE L1 -407 7378 7182 * 2639 174 39 41 chr1 231884021 231884454 -10779899 - L1MB7 LINE L1 -355 5829 5386 1328 195 169 15 chr1 231884454 231884797 -10779556 - MSTD LTR MaLR 0 396 1 2639 174 39 41 chr1 231884797 231885126 -10779227 - L1MB7 LINE L1 -798 5386 5058 604 308 115 28 chr1 231885139 231885496 -10778857 - HAL1 LINE L1 -1226 1281 894 509 359 36 21 chr1 231885802 231885994 -10778359 - MER91A DNA MER1_type -1 195 1 185 318 111 0 chr1 231886493 231886556 -10777797 + L2 LINE L2 2715 2784 -530 229 229 144 76 chr1 231886748 231886866 -10777487 + MIR SINE MIR 137 262 0 2211 106 0 0 chr1 231887187 231887504 -10776849 + AluSx SINE Alu 1 312 0 2311 101 0 0 chr1 231888356 231888654 -10775699 + AluSq SINE Alu 1 298 -15 2292 98 0 0 chr1 231888705 231889000 -10775353 + AluSx SINE Alu 1 295 -17 2237 104 13 0 chr1 231890010 231890318 -10774035 - AluSq SINE Alu -1 312 1 400 83 0 17 chr1 231890320 231890380 -10773973 - AluSp SINE Alu -181 132 74 348 303 179 18 chr1 231890854 231891072 -10773281 - MIR SINE MIR -5 257 5 321 218 211 10 chr1 231891323 231891441 -10772912 + MIR SINE MIR 67 205 -57 1987 105 0 89 chr1 231892832 231893189 -10771164 + AluSx SINE Alu 1 329 0 24 32 0 0 chr1 231893650 231893681 -10770672 + AT_rich Low_complexity Low_complexity 1 31 0 6280 34 1 0 chr1 231894259 231895002 -10769351 - L1PA5 LINE L1 0 6154 5411 253 329 59 0 chr1 231895700 231895785 -10768568 - MIR SINE MIR -16 246 157 658 290 75 61 chr1 231895841 231896217 -10768136 - L2 LINE L2 0 3313 2933 1010 232 46 17 chr1 231896580 231896821 -10767532 - MIR SINE MIR -13 249 2 1924 163 0 10 chr1 231897140 231897446 -10766907 + AluJb SINE Alu 1 303 -9 29 59 0 15 chr1 231897641 231897667 -10766686 + AT_rich Low_complexity Low_complexity 1 26 -41 1784 44 4 4 chr1 231897667 231897893 -10766460 - L1PA8 LINE L1 -8 6164 5939 29 59 0 15 chr1 231897893 231897934 -10766419 + AT_rich Low_complexity Low_complexity 26 67 0 2213 81 34 17 chr1 231898847 231899142 -10765211 + AluY SINE Alu 1 300 -11 403 117 17 0 chr1 231899386 231899446 -10764907 + FRAM SINE Alu 77 137 -39 240 260 13 0 chr1 231899560 231899637 -10764716 + HsTC2 DNA Tc2 1 78 -1820 28 0 0 0 chr1 231900460 231900488 -10763865 + AT_rich Low_complexity Low_complexity 1 28 0 1846 163 10 7 chr1 231900889 231901195 -10763158 - AluJo SINE Alu -5 307 1 307 250 124 37 chr1 231901543 231901663 -10762690 + MER20B DNA MER1_type 81 207 -26 1039 147 68 6 chr1 231901686 231901863 -10762490 - MER5A DNA MER1_type -1 188 1 2453 87 0 0 chr1 231902153 231902463 -10761890 + AluSq SINE Alu 1 310 -3 2154 82 3 51 chr1 231902633 231902927 -10761426 + AluSg SINE Alu 1 280 -30 198 0 0 0 chr1 231902931 231902953 -10761400 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1623 203 0 0 chr1 231903074 231903197 -10761156 + AluJo SINE Alu 1 123 -189 216 0 0 0 chr1 231903197 231903221 -10761132 + (TA)n Simple_repeat Simple_repeat 2 25 0 1623 203 0 0 chr1 231903221 231903388 -10760965 + AluJo SINE Alu 122 291 -21 23 33 0 0 chr1 231903399 231903429 -10760924 + AT_rich Low_complexity Low_complexity 1 30 0 214 200 0 0 chr1 231903664 231903699 -10760654 + MIR SINE MIR 205 239 -23 23 0 0 0 chr1 231904531 231904554 -10759799 + AT_rich Low_complexity Low_complexity 1 23 0 2309 159 60 7 chr1 231907503 231907950 -10756403 - L1MB3 LINE L1 -2 6181 5711 1863 166 3 6 chr1 231907972 231908285 -10756068 - AluSx SINE Alu 0 312 1 1389 167 48 107 chr1 231909006 231909084 -10755269 + MER69 DNA AcHobo 2047 2128 -398 1745 173 3 10 chr1 231909084 231909379 -10754974 - AluJb SINE Alu -19 293 1 207 0 0 0 chr1 231909379 231909402 -10754951 + (A)n Simple_repeat Simple_repeat 1 23 0 1389 167 48 107 chr1 231909402 231909713 -10754640 + MER69 DNA AcHobo 2126 2435 -91 617 362 81 34 chr1 231911962 231912371 -10751982 + L2 LINE L2 2845 3272 0 184 415 92 16 chr1 231913192 231913737 -10750616 - L2 LINE L2 -1099 2215 1630 390 289 17 58 chr1 231913824 231913997 -10750356 + MIR3 SINE MIR 4 169 -39 284 284 126 39 chr1 231914272 231914399 -10749954 + MIR SINE MIR 46 183 -79 189 234 0 0 chr1 231914486 231914550 -10749803 + (TAG)n Simple_repeat Simple_repeat 1 64 0 951 226 77 9 chr1 231914552 231914773 -10749580 - MIR SINE MIR -4 258 23 241 336 74 45 chr1 231916018 231916465 -10747888 - L2 LINE L2 -879 2435 1976 2186 117 0 9 chr1 231916517 231916833 -10747520 + AluSp SINE Alu 1 313 0 394 322 183 26 chr1 231917113 231917563 -10746790 - L2 LINE L2 -209 3063 2685 1797 146 10 27 chr1 231917563 231917864 -10746489 + AluSx SINE Alu 2 297 -15 394 322 183 26 chr1 231917864 231918067 -10746286 - L2 LINE L2 -587 2685 2266 1716 51 0 0 chr1 231919183 231919399 -10744954 - L1PA4 LINE L1 0 6155 5940 29 0 0 0 chr1 231920203 231920232 -10744121 + AT_rich Low_complexity Low_complexity 1 29 0 694 164 0 0 chr1 231920232 231920348 -10744005 - AluJb SINE Alu -196 116 1 709 218 22 34 chr1 231920602 231920781 -10743572 - MER5A DNA MER1_type -3 186 10 454 341 129 5 chr1 231920977 231921194 -10743159 - MIR SINE MIR -7 255 12 762 183 26 13 chr1 231921405 231921558 -10742795 + FRAM SINE Alu 1 154 -22 882 159 148 0 chr1 231923458 231923634 -10740719 + MER3 DNA MER1_type 2 203 -6 24 32 0 0 chr1 231924075 231924106 -10740247 + AT_rich Low_complexity Low_complexity 1 31 0 294 82 20 0 chr1 231924201 231924250 -10740103 - L1PB3 LINE L1 0 6154 6105 522 281 123 15 chr1 231924430 231924633 -10739720 + L2 LINE L2 3001 3225 -88 218 321 55 46 chr1 231924791 231924900 -10739453 - L2 LINE L2 -22 3250 3141 246 203 27 0 chr1 231925242 231925316 -10739037 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 23 0 0 0 chr1 231925615 231925638 -10738715 + AT_rich Low_complexity Low_complexity 1 23 0 2334 100 0 3 chr1 231925902 231926212 -10738141 - AluSg SINE Alu -1 309 1 1917 146 3 25 chr1 231926212 231926527 -10737826 - AluJo SINE Alu -2 310 2 1978 134 26 0 chr1 231926795 231927100 -10737253 + AluSq SINE Alu 1 313 0 296 281 65 59 chr1 231927489 231927642 -10736711 - MIR SINE MIR -62 200 47 21 0 0 0 chr1 231927699 231927720 -10736633 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 231928281 231928304 -10736049 + AT_rich Low_complexity Low_complexity 1 23 0 345 185 0 0 chr1 231928356 231928421 -10735932 + L1PA14 LINE L1 6094 6158 -3 21 0 0 0 chr1 231928636 231928657 -10735696 + AT_rich Low_complexity Low_complexity 1 21 0 502 296 24 32 chr1 231930274 231930399 -10733954 - L2 LINE L2 -6 3266 3143 251 250 13 40 chr1 231930713 231930789 -10733564 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 235 297 0 27 chr1 231931682 231931756 -10732597 - MIR3 SINE MIR 0 208 137 494 288 101 35 chr1 231932716 231933004 -10731349 - L1ME4a LINE L1 -157 5964 5658 267 248 31 26 chr1 231933294 231933426 -10730927 - L2 LINE L2 -11 3302 3131 244 209 194 15 chr1 231933456 231933523 -10730830 - MIR3 SINE MIR -49 159 81 2281 174 61 15 chr1 231935223 231935990 -10728363 - L1MD1 LINE L1 -20 6222 5398 625 62 11 199 chr1 231935995 231936079 -10728274 + L1MDa LINE L1 2322 2358 -4182 939 103 77 13 chr1 231936079 231936235 -10728118 + L1MA9 LINE L1 6143 6308 -4 625 62 11 199 chr1 231936235 231936326 -10728027 + L1MDa LINE L1 2358 2464 -4076 1755 168 26 3 chr1 231936397 231936701 -10727652 - AluJb SINE Alu 0 312 2 21 36 0 0 chr1 231937476 231937504 -10726849 + AT_rich Low_complexity Low_complexity 1 28 0 1647 159 78 28 chr1 231938188 231938509 -10725844 - MER44D DNA MER2_type -1 608 2 22 0 0 0 chr1 231938635 231938657 -10725696 + AT_rich Low_complexity Low_complexity 1 22 0 2850 131 12 38 chr1 231938713 231938850 -10725503 - L1MB3 LINE L1 -2 6181 6042 2074 128 0 0 chr1 231938850 231939147 -10725206 - AluSx SINE Alu -15 297 1 2850 131 12 38 chr1 231939147 231939506 -10724847 - L1MB3 LINE L1 -141 6042 5698 2139 193 35 101 chr1 231940363 231941056 -10723297 + L1ME2 LINE L1 5510 6155 -9 495 265 7 13 chr1 231941518 231941669 -10722684 - L1MC4 LINE L1 -799 7243 7094 189 74 0 0 chr1 231941684 231941711 -10722642 + (T)n Simple_repeat Simple_repeat 1 27 0 822 265 77 67 chr1 231943426 231944726 -10719627 - L1MC5 LINE L1 -859 6949 5755 21 0 0 0 chr1 231946221 231946242 -10718111 + AT_rich Low_complexity Low_complexity 1 21 0 303 286 154 15 chr1 231946244 231946510 -10717843 - L1MC5 LINE L1 -49 7912 7610 24 32 0 0 chr1 231947369 231947400 -10716953 + AT_rich Low_complexity Low_complexity 1 31 0 427 300 71 21 chr1 231948746 231948854 -10715499 + L1ME LINE L1 5573 5674 -447 970 152 12 6 chr1 231948854 231949019 -10715334 + FRAM SINE Alu 1 166 0 427 300 71 21 chr1 231949019 231949150 -10715203 + L1ME LINE L1 5674 5824 -297 24 32 0 0 chr1 231949370 231949401 -10714952 + AT_rich Low_complexity Low_complexity 1 31 0 2146 103 10 7 chr1 231949462 231949763 -10714590 + AluSx SINE Alu 1 302 -10 435 38 0 0 chr1 231950699 231950752 -10713601 + (CA)n Simple_repeat Simple_repeat 2 54 0 285 219 0 0 chr1 231950752 231950825 -10713528 + (TA)n Simple_repeat Simple_repeat 1 73 0 640 201 54 7 chr1 231950915 231951064 -10713289 + MIR SINE MIR 51 206 -56 280 250 92 72 chr1 231951014 231951166 -10713187 - MIR SINE MIR -27 235 81 * 30 83 0 0 chr1 231951243 231951315 -10713038 + AT_rich Low_complexity Low_complexity 1 72 0 898 216 11 11 chr1 231952273 231952458 -10711895 + MER5A DNA MER1_type 5 189 0 444 313 114 0 chr1 231952875 231953041 -10711312 - MIR SINE MIR -3 259 75 25 0 0 0 chr1 231953385 231953410 -10710943 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr1 231953859 231953896 -10710457 + AT_rich Low_complexity Low_complexity 1 37 0 2404 84 3 6 chr1 231953896 231954207 -10710146 + AluSx SINE Alu 1 310 -2 243 214 71 0 chr1 231954836 231954892 -10709461 + L2 LINE L2 3251 3310 -3 1090 264 91 93 chr1 231955580 231955858 -10708495 - L1MEd LINE L1 -5424 695 418 2288 110 0 0 chr1 231955858 231956168 -10708185 - AluSx SINE Alu -2 310 1 1090 264 91 93 chr1 231956168 231956494 -10707859 - L1MEd LINE L1 -5701 418 90 2436 132 65 19 chr1 231956494 231956958 -10707395 + L1MC2 LINE L1 5856 6340 -4 1090 264 91 93 chr1 231956958 231957042 -10707311 - L1MEd LINE L1 -6029 90 7 23 54 0 0 chr1 231957063 231957100 -10707253 + AT_rich Low_complexity Low_complexity 1 37 0 2895 226 143 14 chr1 231957534 231958388 -10705965 + L2 LINE L2 1690 2653 -661 2216 93 0 0 chr1 231958536 231958839 -10705514 + AluSg SINE Alu 1 303 0 997 252 168 17 chr1 231958945 231959524 -10704829 + L2 LINE L2 2650 3313 0 242 241 172 0 chr1 231959933 231960020 -10704333 - MIR SINE MIR -56 206 105 334 230 54 0 chr1 231960204 231960278 -10704075 + MIR SINE MIR 2 79 -183 817 239 98 56 chr1 231960728 231961117 -10703236 - L1MC5 LINE L1 -44 7917 7491 2452 88 3 0 chr1 231961117 231961424 -10702929 - AluSc SINE Alu -1 308 1 817 239 98 56 chr1 231961424 231961658 -10702695 - L1MC5 LINE L1 -470 7491 7268 441 169 59 17 chr1 231961796 231961914 -10702439 - L1MC4 LINE L1 -790 7252 7130 656 181 28 183 chr1 231961915 231962002 -10702351 + L1MC5 LINE L1 6776 6875 -1086 2052 139 3 0 chr1 231962002 231962303 -10702050 + AluSq SINE Alu 1 302 -11 656 181 28 183 chr1 231962303 231962614 -10701739 + L1MC5 LINE L1 6875 7112 -849 565 153 69 4 chr1 231962758 231962956 -10701397 + AluSx SINE Alu 1 293 -19 2019 91 0 0 chr1 231963156 231963410 -10700943 + AluSx SINE Alu 1 254 -58 22 0 0 0 chr1 231963590 231963612 -10700741 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 231964504 231964526 -10699827 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr1 231966164 231966188 -10698165 + (CAA)n Simple_repeat Simple_repeat 2 25 0 292 89 0 36 chr1 231966371 231966427 -10697926 - L1MB7 LINE L1 -19 6165 6112 292 288 65 58 chr1 231966884 231967023 -10697330 - L3 LINE CR1 -251 1326 1187 579 335 14 23 chr1 231967132 231967353 -10697000 - L3 LINE CR1 -385 1192 974 1069 160 9 69 chr1 231967564 231967795 -10696558 - MER20 DNA MER1_type 0 219 3 268 256 219 36 chr1 231968750 231968887 -10695466 - L2 LINE L2 0 3313 3152 25 0 0 0 chr1 231969270 231969295 -10695058 + AT_rich Low_complexity Low_complexity 1 25 0 778 231 94 109 chr1 231970134 231970741 -10693612 - MLT1G1 LTR MaLR 0 567 1 23 54 0 0 chr1 231971559 231971596 -10692757 + AT_rich Low_complexity Low_complexity 1 37 0 2924 176 51 4 chr1 231972415 231972948 -10691405 - MER68 LTR ERV1 -4 558 1 424 243 165 34 chr1 231972987 231973267 -10691086 - L1ME4a LINE L1 -4 6117 5875 1304 145 4 37 chr1 231973267 231973509 -10690844 + MER46A DNA MER2_type 2 235 -1 424 243 165 34 chr1 231973509 231973664 -10690689 - L1ME4a LINE L1 -246 5875 5625 2261 110 7 0 chr1 231973667 231973975 -10690378 - AluSg SINE Alu 0 310 1 200 237 0 0 chr1 231974056 231974094 -10690259 - L2 LINE L2 -48 3224 3187 820 240 75 49 chr1 231974727 231975146 -10689207 - MER39 LTR ERV1 -64 643 1 2221 120 0 3 chr1 231975227 231975527 -10688826 + AluSx SINE Alu 1 299 -13 1905 169 0 0 chr1 231975634 231975918 -10688435 + AluJo SINE Alu 1 284 -28 544 243 140 36 chr1 231976083 231976305 -10688048 + MIR SINE MIR 8 252 -10 22 0 0 0 chr1 231976408 231976430 -10687923 + AT_rich Low_complexity Low_complexity 1 22 0 5779 118 13 0 chr1 231976524 231977548 -10686805 + L1PA14 LINE L1 5106 6143 -18 252 0 0 0 chr1 231979667 231979695 -10684658 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2237 77 0 0 chr1 231979698 231979972 -10684381 - AluSg SINE Alu -36 274 1 1090 256 21 97 chr1 231980130 231980555 -10683798 + L2 LINE L2 2918 3310 -3 3845 104 12 0 chr1 231980862 231981470 -10682883 - L1PA8 LINE L1 -794 5352 4753 5256 83 45 1 chr1 231981470 231982220 -10682133 + L1PA8 LINE L1 5384 6166 -6 2454 84 0 6 chr1 231982419 231982730 -10681623 - AluY SINE Alu -2 309 1 23 0 0 0 chr1 231983086 231983109 -10681244 + AT_rich Low_complexity Low_complexity 1 23 0 210 260 240 58 chr1 231983533 231983637 -10680716 - L2 LINE L2 -5 3267 3145 2532 56 0 10 chr1 231985385 231985690 -10678663 + AluY SINE Alu 1 302 -9 688 277 25 38 chr1 231985942 231986177 -10678176 + MIR SINE MIR 25 256 -6 180 216 0 0 chr1 231986335 231986372 -10677981 + MER5A DNA MER1_type 89 125 -64 206 243 155 48 chr1 231986734 231986837 -10677516 - L2 LINE L2 -1 3312 3199 2351 88 0 16 chr1 231987005 231987322 -10677031 + AluSx SINE Alu 1 312 0 2227 104 7 7 chr1 231987978 231988286 -10676067 - AluY SINE Alu -3 308 1 1782 152 28 7 chr1 231988289 231988578 -10675775 - AluJb SINE Alu -17 295 1 2243 98 0 14 chr1 231988636 231988932 -10675421 + AluSx SINE Alu 1 292 -20 255 31 0 0 chr1 231988953 231988985 -10675368 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 1917 99 0 105 chr1 231988986 231989300 -10675053 - AluSg SINE Alu -29 281 1 2414 94 0 0 chr1 231989469 231989778 -10674575 - AluSq SINE Alu -4 309 1 417 135 68 0 chr1 231990068 231990142 -10674211 + MER5A DNA MER1_type 1 79 -110 21 36 0 0 chr1 231990336 231990364 -10673989 + AT_rich Low_complexity Low_complexity 1 28 0 2145 123 0 10 chr1 231990568 231990870 -10673483 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 231991844 231991866 -10672487 + AT_rich Low_complexity Low_complexity 1 22 0 189 139 28 0 chr1 231991893 231991929 -10672424 - L2 LINE L2 -8 3305 3269 762 353 104 26 chr1 231992283 231993119 -10671234 - L2 LINE L2 -660 2654 1754 709 304 151 21 chr1 231993516 231993894 -10670459 - L2 LINE L2 -1 3312 2886 1286 221 0 0 chr1 231993896 231994195 -10670158 + L1 LINE L1 4256 4554 -1592 2250 105 0 3 chr1 231994196 231994501 -10669852 + AluSq SINE Alu 1 304 -9 308 320 34 67 chr1 231994760 231994938 -10669415 + MIR SINE MIR 9 180 -82 2510 56 0 7 chr1 231994976 231995282 -10669071 + AluY SINE Alu 1 304 -7 373 121 0 0 chr1 231995609 231995675 -10668678 - Looper DNA T2_type -94 1464 1399 2937 135 22 30 chr1 231996372 231996905 -10667448 - L1MA9 LINE L1 0 6312 5784 3793 163 76 38 chr1 231996953 231997139 -10667214 - Looper DNA T2_type -632 926 749 2173 75 4 7 chr1 231997139 231997490 -10666863 - AluSc SINE Alu 0 350 1 3793 163 76 38 chr1 231997490 231998194 -10666159 - Looper DNA T2_type -809 749 1 21 0 0 0 chr1 231999070 231999091 -10665262 + AT_rich Low_complexity Low_complexity 1 21 0 2003 137 0 0 chr1 231999794 232000109 -10664244 - AluSx SINE Alu 0 315 1 2345 110 3 0 chr1 232000321 232000629 -10663724 - AluSx SINE Alu -3 309 1 300 369 32 37 chr1 232000716 232000933 -10663420 - L2 LINE L2 -532 2782 2567 255 364 115 23 chr1 232000964 232001248 -10663105 - L2 LINE L2 -181 3091 2782 1597 170 0 45 chr1 232001265 232001553 -10662800 + AluJo SINE Alu 1 275 -37 331 210 0 0 chr1 232003431 232003493 -10660860 - MIR SINE MIR 0 262 201 1481 162 3 61 chr1 232003857 232004154 -10660199 - AluJb SINE Alu -21 291 12 397 202 35 70 chr1 232004157 232004271 -10660082 - MIR SINE MIR -74 188 79 254 220 230 20 chr1 232004289 232004489 -10659864 + L1MEd LINE L1 964 1205 -4914 512 299 142 60 chr1 232004808 232005239 -10659114 + L2 LINE L2 2807 3272 0 2410 90 0 0 chr1 232005295 232005596 -10658757 + AluSq SINE Alu 1 301 -12 1772 180 3 35 chr1 232005628 232005945 -10658408 + AluJo SINE Alu 1 307 -5 224 307 26 0 chr1 232006039 232006192 -10658161 + (TA)n Simple_repeat Simple_repeat 1 157 0 25 75 0 0 chr1 232006670 232006723 -10657630 + AT_rich Low_complexity Low_complexity 1 53 0 405 226 165 24 chr1 232006817 232006981 -10657372 - MER115 DNA AcHobo -469 224 38 25 31 0 0 chr1 232007513 232007545 -10656808 + AT_rich Low_complexity Low_complexity 1 32 0 1010 99 0 0 chr1 232007888 232008019 -10656334 - AluSg SINE Alu -177 133 3 387 279 91 35 chr1 232008105 232008302 -10656051 + L1ME4a LINE L1 5682 5889 -232 1683 181 143 20 chr1 232009467 232009909 -10654444 - LTR54B LTR ERV1 -2 496 1 554 224 96 24 chr1 232010287 232010580 -10653773 - MER21B LTR ERV1 -62 801 408 1266 205 74 94 chr1 232010623 232011028 -10653325 - LTR10B LTR ERV1 0 547 151 8098 260 43 35 chr1 232011062 232013490 -10650863 - LTR54B-int LTR ERV1 -1 6648 4201 2285 283 124 12 chr1 232013682 232014691 -10649662 + L2 LINE L2 1962 3083 -230 842 147 9 7 chr1 232014691 232014850 -10649503 + L1 LINE L1 3785 3945 -2201 311 169 0 56 chr1 232014885 232014956 -10649397 + L2 LINE L2 3158 3224 -89 1204 133 0 0 chr1 232014956 232015122 -10649231 + AluSq SINE Alu 1 166 -147 511 228 16 130 chr1 232015186 232015432 -10648921 - HERVI LTR ERV1 -5830 819 602 1124 233 46 6 chr1 232015434 232015745 -10648608 - HERVI LTR ERV1 -6297 352 5 1385 175 29 94 chr1 232015748 232016090 -10648263 - LTR10B LTR ERV1 0 547 228 292 275 0 0 chr1 232016196 232016265 -10648088 - MER21B LTR ERV1 -513 350 282 3418 151 61 18 chr1 232016304 232016916 -10647437 - MER51A LTR ERV1 -7 650 1 831 199 61 81 chr1 232016916 232017136 -10647217 - MER21B LTR ERV1 -648 215 1 183 129 0 0 chr1 232017976 232018007 -10646346 + (TA)n Simple_repeat Simple_repeat 2 32 0 2100 129 14 34 chr1 232018011 232018233 -10646120 - MER2 DNA MER2_type 0 344 130 1983 122 17 0 chr1 232018233 232018529 -10645824 + AluY SINE Alu 1 301 -10 2100 129 14 34 chr1 232018529 232018656 -10645697 - MER2 DNA MER2_type -214 130 2 24 32 0 0 chr1 232019366 232019397 -10644956 + AT_rich Low_complexity Low_complexity 1 31 0 432 55 0 0 chr1 232019557 232019612 -10644741 + (TG)n Simple_repeat Simple_repeat 2 56 0 1679 159 201 5 chr1 232019619 232019923 -10644430 - L1MB4 LINE L1 -18 6162 5766 420 20 0 0 chr1 232019923 232019972 -10644381 + (TG)n Simple_repeat Simple_repeat 2 50 0 1679 159 201 5 chr1 232019972 232020051 -10644302 - L1MB4 LINE L1 -414 5766 5704 2252 82 0 10 chr1 232020562 232020866 -10643487 - AluSx SINE Alu -11 301 1 1991 139 10 0 chr1 232021100 232021401 -10642952 + AluSx SINE Alu 1 304 -8 204 267 0 33 chr1 232022365 232022425 -10641928 - L2 LINE L2 -78 3194 3137 29 28 0 0 chr1 232024962 232024998 -10639355 + AT_rich Low_complexity Low_complexity 1 36 0 2141 81 0 62 chr1 232025282 232025605 -10638748 - AluY SINE Alu -8 303 1 591 267 99 30 chr1 232025743 232026005 -10638348 - L2 LINE L2 -11 3302 3023 2046 115 3 0 chr1 232026012 232026300 -10638053 + AluSx SINE Alu 6 294 -18 191 297 31 0 chr1 232026678 232026742 -10637611 - L2 LINE L2 0 3272 3207 1990 95 41 3 chr1 232026793 232027087 -10637266 + AluSg SINE Alu 4 308 -2 2136 107 3 0 chr1 232027178 232027478 -10636875 - AluSq SINE Alu -11 302 2 234 319 218 5 chr1 232028885 232029101 -10635252 - MARNA DNA Mariner -199 387 126 2097 93 4 0 chr1 232029185 232029511 -10634842 - AluSx SINE Alu 0 327 1 22 0 0 0 chr1 232030123 232030145 -10634208 + AT_rich Low_complexity Low_complexity 1 22 0 2336 84 0 0 chr1 232030431 232030729 -10633624 + AluSp SINE Alu 1 298 -15 354 23 0 0 chr1 232030730 232030773 -10633580 + (TA)n Simple_repeat Simple_repeat 2 44 0 590 324 57 15 chr1 232030910 232031243 -10633110 + L1MEc LINE L1 20 366 -6030 295 261 176 25 chr1 232031312 232031431 -10632922 - MARNA DNA Mariner -325 261 125 288 374 32 15 chr1 232031674 232032014 -10632339 + L1MEc LINE L1 413 758 -5638 309 122 0 0 chr1 232032017 232032058 -10632295 + AluSc SINE Alu 113 153 -146 1822 244 134 41 chr1 232032059 232032371 -10631982 + L1MEc LINE L1 1211 1492 -4904 2357 80 0 6 chr1 232032371 232032683 -10631670 - AluSq SINE Alu -3 310 1 1822 244 134 41 chr1 232032683 232033355 -10630998 + L1MEc LINE L1 1492 2287 -4109 664 84 0 0 chr1 232033355 232033438 -10630915 - AluSc SINE Alu -191 118 36 2144 108 0 0 chr1 232033624 232033929 -10630424 + AluSq SINE Alu 1 305 -8 407 231 20 20 chr1 232033929 232034066 -10630287 + L1MEc LINE L1 2324 2463 -3752 1903 89 0 25 chr1 232034068 232034349 -10630004 + AluSc SINE Alu 36 309 0 933 179 22 11 chr1 232034402 232034586 -10629767 - MER5A DNA MER1_type -2 187 2 210 268 0 12 chr1 232035800 232035882 -10628471 + C-rich Low_complexity Low_complexity 3 83 0 32 43 0 0 chr1 232036026 232036072 -10628281 + GC_rich Low_complexity Low_complexity 1 46 0 228 100 0 0 chr1 232036110 232036150 -10628203 + (CGGGGG)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr1 232036391 232036422 -10627931 + GC_rich Low_complexity Low_complexity 1 31 0 1709 100 0 4 chr1 232038326 232038565 -10625788 + AluSx SINE Alu 20 257 -55 2290 90 3 0 chr1 232040417 232040727 -10623626 - AluSp SINE Alu -2 311 1 198 335 119 43 chr1 232042662 232043014 -10621339 - L2 LINE L2 -5 3267 2889 201 273 0 0 chr1 232044226 232044270 -10620083 - L2 LINE L2 -90 3223 3180 267 88 0 0 chr1 232044531 232044565 -10619788 - AluJb SINE Alu -195 107 74 867 145 0 0 chr1 232044597 232044728 -10619625 + FRAM SINE Alu 20 150 -26 2147 82 0 0 chr1 232045531 232045850 -10618503 - AluY SINE Alu 0 319 1 1497 191 3 7 chr1 232045850 232046143 -10618210 - AluJo SINE Alu -10 302 11 248 75 0 25 chr1 232046695 232046735 -10617618 + (GGA)n Simple_repeat Simple_repeat 3 41 0 368 299 20 54 chr1 232046812 232046959 -10617394 - MIR3 SINE MIR -23 185 44 1695 168 3 3 chr1 232047479 232047771 -10616582 + AluJo SINE Alu 1 292 -20 29 28 0 0 chr1 232047777 232047813 -10616540 + AT_rich Low_complexity Low_complexity 1 36 0 2139 108 0 16 chr1 232048622 232048936 -10615417 - AluSx SINE Alu -3 309 1 265 228 54 11 chr1 232049385 232049477 -10614876 - L1ME4a LINE L1 -71 6050 5955 201 279 16 0 chr1 232049768 232049829 -10614524 - L2 LINE L2 -2 3270 3209 207 204 0 0 chr1 232050728 232050772 -10613581 + (CA)n Simple_repeat Simple_repeat 1 44 0 1627 212 34 34 chr1 232050793 232051263 -10613090 + MLT1B LTR MaLR 1 467 0 219 300 0 10 chr1 232051263 232051363 -10612990 + (CA)n Simple_repeat Simple_repeat 1 99 0 240 289 35 78 chr1 232051953 232052065 -10612288 + MIR3 SINE MIR 46 152 -56 1094 161 0 21 chr1 232052065 232052258 -10612095 + MER5A DNA MER1_type 1 189 0 240 289 35 78 chr1 232052258 232052287 -10612066 + MIR3 SINE MIR 152 181 -27 354 348 45 29 chr1 232052310 232052548 -10611805 - MIR SINE MIR -1 261 16 239 180 281 56 chr1 232053215 232053231 -10611122 + L2 LINE L2 3205 3216 -97 2181 100 3 13 chr1 232053231 232053542 -10610811 - AluSg SINE Alu -2 308 1 239 180 281 56 chr1 232053542 232053614 -10610739 + L2 LINE L2 3216 3313 0 543 90 0 0 chr1 232053653 232053731 -10610622 + (CA)n Simple_repeat Simple_repeat 1 78 0 1769 144 0 11 chr1 232054873 232055177 -10609176 + AluJb SINE Alu 1 301 0 202 259 0 56 chr1 232055360 232055414 -10608939 + L2 LINE L2 3200 3250 -22 2383 84 0 0 chr1 232055419 232055727 -10608626 - AluSg SINE Alu -2 308 1 1674 131 27 34 chr1 232055732 232056029 -10608324 - AluJo SINE Alu -17 295 1 26 0 0 0 chr1 232057000 232057026 -10607327 + AT_rich Low_complexity Low_complexity 1 26 0 2090 103 20 3 chr1 232057227 232057527 -10606826 - AluSp SINE Alu -8 305 1 1881 135 0 30 chr1 232057721 232058024 -10606329 - AluJo SINE Alu -18 294 1 1831 164 19 87 chr1 232058765 232059181 -10605172 + MLT1B LTR MaLR 1 388 -2 2123 107 3 3 chr1 232059333 232059632 -10604721 + AluSp SINE Alu 1 299 -14 444 19 0 0 chr1 232060145 232060198 -10604155 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2136 82 0 0 chr1 232060198 232060480 -10603873 - AluY SINE Alu -29 282 1 2068 114 3 0 chr1 232060482 232060771 -10603582 - AluSx SINE Alu -22 290 1 5584 163 30 31 chr1 232060771 232061900 -10602453 - L1MC2 LINE L1 -15 6329 5199 400 352 40 0 chr1 232062117 232062242 -10602111 - L2 LINE L2 -1 3271 3142 1004 180 0 51 chr1 232062279 232062496 -10601857 + AluJo SINE Alu 85 290 -22 1337 125 106 0 chr1 232063128 232063336 -10601017 - MER30 DNA MER1_type 0 230 1 28 29 0 0 chr1 232063364 232063399 -10600954 + AT_rich Low_complexity Low_complexity 1 35 0 1495 125 0 104 chr1 232063405 232063684 -10600669 - AluJo SINE Alu -62 250 1 304 292 77 18 chr1 232063776 232063944 -10600409 - L1ME4a LINE L1 -104 6017 5840 189 154 154 51 chr1 232064116 232064194 -10600159 + MIR SINE MIR 54 139 -123 715 184 0 0 chr1 232064260 232064385 -10599968 + L1M4 LINE L1 4494 4618 -1528 887 156 42 0 chr1 232064387 232064554 -10599799 - MLT1B LTR MaLR -216 174 1 1291 159 18 4 chr1 232064562 232064788 -10599565 + L1 LINE L1 4493 4721 -1425 308 213 0 50 chr1 232065585 232065665 -10598688 + L1ME3A LINE L1 6081 6156 -14 4570 142 13 1 chr1 232065812 232066515 -10597838 - MER50 LTR ERV1 -23 711 1 2057 110 31 0 chr1 232066814 232067106 -10597247 + AluSx SINE Alu 1 301 -11 1875 162 0 9 chr1 232067183 232067318 -10597035 + AluJb SINE Alu 1 136 -176 2345 70 0 3 chr1 232067318 232067616 -10596737 + AluSg1 SINE Alu 1 297 -12 1875 162 0 9 chr1 232067616 232067795 -10596558 + AluJb SINE Alu 136 312 0 211 327 140 27 chr1 232068290 232068440 -10595913 + L2 LINE L2 2923 3089 -183 434 308 75 28 chr1 232068519 232068733 -10595620 + MIR SINE MIR 20 243 -19 325 294 186 10 chr1 232068718 232068922 -10595431 - MIR SINE MIR -3 259 20 * 2268 86 0 0 chr1 232069224 232069526 -10594827 - AluSc SINE Alu -7 302 1 1852 130 4 0 chr1 232069526 232069802 -10594551 - AluSq SINE Alu -36 277 1 316 222 28 0 chr1 232070136 232070207 -10594146 - MLT1G1 LTR MaLR -4 591 519 331 73 0 0 chr1 232070207 232070248 -10594105 - MER46A DNA MER2_type 0 236 196 726 233 6 0 chr1 232070248 232070420 -10593933 + L1PB1 LINE L1 25 197 -6666 * 11892 199 48 15 chr1 232070417 232071983 -10592370 + L1PB1 LINE L1 1392 2905 -3962 2032 104 20 3 chr1 232071983 232072280 -10592073 + AluSg SINE Alu 1 302 -8 11892 199 48 15 chr1 232072280 232075285 -10589068 + L1PB1 LINE L1 2905 5810 -1057 2312 81 0 10 chr1 232075285 232075595 -10588758 + AluSg1 SINE Alu 1 307 -2 11892 199 48 15 chr1 232075595 232075883 -10588470 + L1PB1 LINE L1 5810 6087 -780 235 0 57 0 chr1 232075883 232075918 -10588435 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 11892 199 48 15 chr1 232075918 232075941 -10588412 + L1PB1 LINE L1 6087 6108 -759 500 0 17 0 chr1 232075941 232076001 -10588352 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 11892 199 48 15 chr1 232076001 232076354 -10587999 + L1PB1 LINE L1 6108 6863 -4 1203 166 0 68 chr1 232076355 232076590 -10587763 - MER46A DNA MER2_type -17 219 1 1014 250 144 46 chr1 232076590 232077041 -10587312 - MLT1G1 LTR MaLR -116 439 1 1825 112 6 61 chr1 232077182 232077520 -10586833 + AluSg SINE Alu 1 310 0 556 275 81 60 chr1 232077613 232077709 -10586644 + L1ME4a LINE L1 5314 5407 -714 791 174 0 8 chr1 232077709 232077841 -10586512 - FLAM_C SINE Alu -2 131 1 556 275 81 60 chr1 232077841 232078076 -10586277 + L1ME4a LINE L1 5407 5669 -452 2107 103 17 0 chr1 232078076 232078377 -10585976 + AluY SINE Alu 1 306 -5 556 275 81 60 chr1 232078377 232078567 -10585786 + L1ME4a LINE L1 5669 5854 -267 369 270 72 0 chr1 232078879 232078990 -10585363 + MIR SINE MIR 63 181 -81 232 222 0 0 chr1 232080134 232080179 -10584174 - Charlie2 DNA MER1_type -2 2860 2816 548 118 129 0 chr1 232080199 232080292 -10584061 + MER57A LTR ERV1 1 105 -298 432 192 198 0 chr1 232080330 232080480 -10583873 - MLT1E3 LTR MaLR -345 309 85 1802 142 7 7 chr1 232080592 232080881 -10583472 - AluJo SINE Alu -19 293 5 432 120 67 0 chr1 232080887 232080962 -10583391 - L1MB8 LINE L1 -6 6172 6093 2921 181 43 25 chr1 232080983 232081023 -10583330 - L1MB4 LINE L1 -12 6168 6130 2164 83 7 3 chr1 232081023 232081312 -10583041 - AluSc SINE Alu -19 290 1 2921 181 43 25 chr1 232081312 232081917 -10582436 - L1MB4 LINE L1 -50 6130 5511 207 0 0 0 chr1 232081921 232081944 -10582409 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1403 168 76 2 chr1 232081949 232082349 -10582004 - L1MB4 LINE L1 -705 5469 5048 1184 238 58 41 chr1 232082353 232082697 -10581656 - L1M4c LINE L1 -5999 385 36 25 75 0 0 chr1 232083009 232083062 -10581291 + AT_rich Low_complexity Low_complexity 1 53 0 762 215 159 26 chr1 232085458 232085653 -10578700 + MIR SINE MIR 23 243 -19 588 222 32 72 chr1 232087270 232087491 -10576862 - MER58C DNA MER1_type -3 212 1 462 234 98 62 chr1 232089143 232089399 -10574954 - L2 LINE L2 -181 3091 2827 26 30 0 0 chr1 232089727 232089760 -10574593 + AT_rich Low_complexity Low_complexity 1 33 0 2172 99 10 3 chr1 232089915 232090218 -10574135 - AluSx SINE Alu -7 305 1 23 0 0 0 chr1 232090423 232090446 -10573907 + AT_rich Low_complexity Low_complexity 1 23 0 2386 62 0 13 chr1 232091953 232092259 -10572094 + AluY SINE Alu 2 303 -8 703 196 72 127 chr1 232092595 232092769 -10571584 - L1M4 LINE L1 -743 5403 5221 279 0 0 0 chr1 232092769 232092800 -10571553 + (TG)n Simple_repeat Simple_repeat 2 32 0 703 196 72 127 chr1 232092800 232092821 -10571532 - L1M4 LINE L1 -925 5221 5200 1388 189 21 7 chr1 232092821 232093101 -10571252 - AluJo SINE Alu -24 288 5 703 196 72 127 chr1 232093101 232093267 -10571086 - L1M4 LINE L1 -946 5200 5061 * 754 204 123 36 chr1 232093263 232093597 -10570756 + L1MB3 LINE L1 4151 4513 -1633 1051 151 0 6 chr1 232093632 232093804 -10570549 - AluJo SINE Alu -139 173 3 476 221 35 0 chr1 232094434 232094547 -10569806 + L1MD2 LINE L1 6233 6349 -10 4592 160 44 11 chr1 232094893 232096027 -10568326 + L1MB3 LINE L1 4944 6113 -70 1251 114 89 5 chr1 232096114 232096316 -10568037 - AluSg/x SINE Alu -8 304 86 1322 251 52 30 chr1 232096505 232097092 -10567261 - L2 LINE L2 0 3313 2714 321 174 0 0 chr1 232098149 232098218 -10566135 + (CA)n Simple_repeat Simple_repeat 2 70 0 2119 114 0 0 chr1 232098387 232098677 -10565676 - AluSx SINE Alu -22 290 1 207 200 22 0 chr1 232098756 232098801 -10565552 + (CAG)n Simple_repeat Simple_repeat 2 47 0 365 294 75 0 chr1 232099128 232099274 -10565079 + MIR3 SINE MIR 23 179 -29 208 250 135 58 chr1 232099963 232100067 -10564286 - MIR3 SINE MIR -15 193 82 258 322 17 9 chr1 232100452 232100567 -10563786 + G-rich Low_complexity Low_complexity 4 119 0 2193 91 3 0 chr1 232101325 232101622 -10562731 - AluSq SINE Alu -15 298 1 672 177 57 14 chr1 232101647 232101788 -10562565 - L1MB5 LINE L1 -290 5884 5738 1565 126 0 8 chr1 232101849 232102087 -10562266 - AluSg/x SINE Alu -4 306 71 1966 152 52 6 chr1 232102241 232102570 -10561783 - MER2 DNA MER2_type 0 344 1 305 330 119 16 chr1 232102743 232102928 -10561425 + L2 LINE L2 2893 3096 -176 240 296 102 88 chr1 232103014 232103038 -10561315 - L2 LINE L2 -3 3269 3247 1703 151 20 10 chr1 232103038 232103342 -10561011 + AluJo SINE Alu 1 307 -5 240 296 102 88 chr1 232103342 232103543 -10560810 - L2 LINE L2 -25 3247 3041 22 0 0 0 chr1 232103549 232103571 -10560782 + AT_rich Low_complexity Low_complexity 1 22 0 1724 175 3 3 chr1 232103611 232103903 -10560450 - AluJb SINE Alu -20 292 1 468 195 0 0 chr1 232103911 232103998 -10560355 - FLAM_A SINE Alu -17 125 39 2210 92 3 0 chr1 232104001 232104293 -10560060 - AluSq SINE Alu -20 293 1 1043 218 23 9 chr1 232104347 232104567 -10559786 - MER58A DNA MER1_type -1 223 1 31 44 0 0 chr1 232104636 232104681 -10559672 + AT_rich Low_complexity Low_complexity 1 45 0 2058 121 0 10 chr1 232104761 232105067 -10559286 - AluSx SINE Alu -9 303 1 2233 95 0 0 chr1 232105552 232105847 -10558506 + AluSq SINE Alu 1 295 -18 333 287 81 37 chr1 232105942 232106078 -10558275 - MIR SINE MIR -56 206 65 3483 109 24 69 chr1 232106917 232107091 -10557262 + MER4B LTR ERV1 1 181 -429 2080 106 0 0 chr1 232107091 232107375 -10556978 + AluSx SINE Alu 1 284 -28 240 35 0 0 chr1 232107379 232107408 -10556945 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3483 109 24 69 chr1 232107408 232107867 -10556486 + MER4B LTR ERV1 184 610 0 2151 94 7 3 chr1 232108269 232108567 -10555786 - AluSg SINE Alu -11 299 1 2099 100 0 0 chr1 232109383 232109697 -10554656 + AluSx SINE Alu 1 314 0 240 272 165 29 chr1 232110411 232110514 -10553839 + L2 LINE L2 3182 3298 -15 314 311 22 0 chr1 232110523 232110613 -10553740 + MIR SINE MIR 59 150 -112 488 200 96 0 chr1 232110633 232110748 -10553605 - L2 LINE L2 -1252 2062 1937 1925 146 7 37 chr1 232110750 232111223 -10553130 + AluSx SINE Alu 1 297 -15 375 200 35 26 chr1 232111228 232111343 -10553010 - L2 LINE L2 -1379 1935 1820 2609 60 0 0 chr1 232111643 232111945 -10552408 + AluY SINE Alu 1 302 -9 2007 121 40 3 chr1 232112056 232112354 -10551999 + AluSg SINE Alu 1 309 -1 269 194 0 48 chr1 232113321 232113383 -10550970 + L1MC5 LINE L1 7154 7212 -749 1110 231 67 40 chr1 232113391 232113767 -10550586 + L1MC5 LINE L1 7127 7512 -449 240 257 26 26 chr1 232113848 232113961 -10550392 + L1ME3A LINE L1 5963 6075 -95 271 339 0 0 chr1 232114049 232114173 -10550180 - L2 LINE L2 -1484 1830 1707 1239 158 8 63 chr1 232114175 232114428 -10549925 - AluJo SINE Alu -5 307 69 1710 231 94 12 chr1 232114558 232114734 -10549619 + MLT1F LTR MaLR 1 161 -381 213 39 0 0 chr1 232114734 232114760 -10549593 + (TC)n Simple_repeat Simple_repeat 1 26 0 1710 231 94 12 chr1 232114760 232115082 -10549271 + MLT1F LTR MaLR 161 540 -2 310 197 30 0 chr1 232115084 232115150 -10549203 + MER112 DNA MER1_type 3 70 -190 232 250 0 0 chr1 232115155 232115216 -10549137 + (CA)n Simple_repeat Simple_repeat 1 61 0 314 222 41 105 chr1 232115218 232115389 -10548964 + MER112 DNA MER1_type 60 219 -41 1106 134 0 0 chr1 232115656 232115830 -10548523 - AluSg/x SINE Alu 0 307 134 2255 114 3 0 chr1 232115830 232116128 -10548225 - AluSp SINE Alu -14 299 1 1679 217 5 27 chr1 232116235 232116608 -10547745 + MLT1A1 LTR MaLR 1 365 0 464 283 124 9 chr1 232116765 232116998 -10547355 - L1ME3A LINE L1 -241 5929 5670 1092 131 57 87 chr1 232117411 232117463 -10546890 - MER58A DNA MER1_type -2196 224 172 1848 157 23 7 chr1 232117463 232117762 -10546591 - AluJo SINE Alu -8 304 1 1092 131 57 87 chr1 232117762 232117938 -10546415 - MER58A DNA MER1_type -2248 172 3 2055 128 7 0 chr1 232118456 232118745 -10545608 - AluSx SINE Alu -1 311 21 2420 102 0 3 chr1 232119437 232119751 -10544602 + AluSq SINE Alu 1 313 0 249 354 116 0 chr1 232121898 232122045 -10542308 + MER91A DNA MER1_type 31 194 -2 2392 102 0 0 chr1 232122527 232122830 -10541523 + AluSq SINE Alu 1 303 -10 301 179 75 0 chr1 232122939 232123006 -10541347 - MIR3 SINE MIR -45 163 92 2330 94 0 3 chr1 232124547 232124846 -10539507 - AluSg SINE Alu -12 298 1 396 321 44 13 chr1 232125342 232125501 -10538852 + MIR SINE MIR 23 186 -76 348 83 0 0 chr1 232125853 232125901 -10538452 - Alu SINE Alu -254 48 1 2245 118 16 0 chr1 232126922 232127227 -10537126 + AluSx SINE Alu 1 310 -2 1801 138 11 0 chr1 232129188 232129457 -10534896 + AluJb SINE Alu 39 310 -2 3875 156 26 34 chr1 232129693 232129718 -10534635 + L1MB3 LINE L1 5449 5473 -710 2042 128 3 14 chr1 232129718 232130015 -10534338 - AluSg SINE Alu -16 294 1 3875 156 26 34 chr1 232130015 232130158 -10534195 + L1MB3 LINE L1 5473 5616 -567 2055 120 14 0 chr1 232130158 232130450 -10533903 + AluSx SINE Alu 1 296 -16 3875 156 26 34 chr1 232130450 232131012 -10533341 + L1MB3 LINE L1 5616 6174 -9 261 223 78 48 chr1 232131013 232131116 -10533237 + MIR SINE MIR 121 226 -36 966 204 16 5 chr1 232131759 232131945 -10532408 + MER58A DNA MER1_type 37 224 0 26 0 0 0 chr1 232132325 232132351 -10532002 + AT_rich Low_complexity Low_complexity 1 26 0 8708 172 14 10 chr1 232132351 232132920 -10531433 - L1PB3 LINE L1 -2 6152 5587 2450 93 3 0 chr1 232132920 232133232 -10531121 + AluSp SINE Alu 1 313 0 8708 172 14 10 chr1 232133232 232135207 -10529146 - L1PB3 LINE L1 -567 5587 3614 1511 237 9 0 chr1 232135446 232135783 -10528570 + MER58B DNA MER1_type 2 341 0 190 231 58 0 chr1 232136178 232136230 -10528123 - MIR SINE MIR -79 183 129 2301 87 0 17 chr1 232136241 232136540 -10527813 - AluSc SINE Alu -11 298 5 310 244 0 22 chr1 232136558 232136648 -10527705 - MIR SINE MIR -14 248 161 369 0 0 0 chr1 232136698 232136739 -10527614 + (CA)n Simple_repeat Simple_repeat 2 42 0 182 33 67 0 chr1 232136748 232136778 -10527575 + T-rich Low_complexity Low_complexity 2 33 0 1813 115 17 21 chr1 232136796 232137104 -10527249 - MER4D LTR ERV1 -578 294 1 1961 105 54 4 chr1 232137879 232138144 -10526209 + AluSx SINE Alu 6 287 -25 312 27 0 0 chr1 232138144 232138181 -10526172 + (CA)n Simple_repeat Simple_repeat 2 38 0 219 380 53 9 chr1 232138274 232138387 -10525966 - L2 LINE L2 -5 3267 3150 2261 109 3 0 chr1 232139139 232139441 -10524912 + AluSx SINE Alu 1 303 -9 438 276 22 50 chr1 232139637 232139818 -10524535 - MIR SINE MIR -54 208 33 450 0 0 0 chr1 232140581 232140631 -10523722 + (TG)n Simple_repeat Simple_repeat 1 50 0 189 0 0 0 chr1 232140677 232140698 -10523655 + (TA)n Simple_repeat Simple_repeat 1 21 0 1936 139 7 10 chr1 232140938 232141240 -10523113 - AluJo SINE Alu -11 301 1 274 284 37 82 chr1 232141357 232141491 -10522862 + L2 LINE L2 3169 3296 -17 2139 125 7 3 chr1 232141717 232142021 -10522332 - AluSx SINE Alu -7 305 1 2476 89 0 0 chr1 232142027 232142331 -10522022 - AluSx SINE Alu -8 304 1 263 262 76 81 chr1 232143215 232143364 -10520989 + MIR SINE MIR 16 163 -45 202 250 59 0 chr1 232143412 232143480 -10520873 - MIR SINE MIR -6 256 185 2263 119 0 6 chr1 232143498 232143810 -10520543 - AluSx SINE Alu -2 310 1 1987 144 0 25 chr1 232144316 232144636 -10519717 + AluSx SINE Alu 1 312 0 191 61 30 0 chr1 232144734 232144767 -10519586 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 587 298 78 23 chr1 232144769 232145078 -10519275 + L1ME4a LINE L1 5608 5933 -188 1264 167 14 0 chr1 232145084 232145299 -10519054 + AluJb SINE Alu 87 304 -8 973 222 40 22 chr1 232145314 232145452 -10518901 + L1MC4 LINE L1 7756 7890 -152 204 40 0 0 chr1 232145452 232145477 -10518876 + (TA)n Simple_repeat Simple_repeat 2 26 0 973 222 40 22 chr1 232145477 232145613 -10518740 + L1MC4 LINE L1 7890 8035 -7 2115 135 0 0 chr1 232145664 232145961 -10518392 + AluSq SINE Alu 1 297 -16 292 276 17 35 chr1 232146771 232146891 -10517462 + MIR SINE MIR 33 148 -79 1805 167 14 38 chr1 232147137 232147484 -10516869 + MER58B DNA MER1_type 1 339 -2 2395 103 0 0 chr1 232147876 232148187 -10516166 - AluY SINE Alu 0 311 1 2210 99 7 0 chr1 232149799 232150082 -10514271 + AluSx SINE Alu 5 289 -23 2762 164 31 43 chr1 232150674 232150908 -10513445 + L1MB7 LINE L1 5591 5826 -358 2413 105 0 3 chr1 232150908 232151222 -10513131 + AluSq SINE Alu 1 313 0 2762 164 31 43 chr1 232151222 232151574 -10512779 + L1MB7 LINE L1 5826 6170 -14 6015 12 0 1 chr1 232151762 232152431 -10511922 - L1PA2 LINE L1 0 6155 5488 2441 125 89 0 chr1 232153335 232153727 -10510626 + MSTC LTR MaLR 1 427 -1 2162 142 0 0 chr1 232154145 232154441 -10509912 + AluSx SINE Alu 1 296 -16 528 143 67 18 chr1 232155415 232155876 -10508477 + (TA)n Simple_repeat Simple_repeat 1 483 0 212 154 19 0 chr1 232155876 232155928 -10508425 + (CATTA)n Simple_repeat Simple_repeat 3 55 0 208 254 14 0 chr1 232155934 232156005 -10508348 + (TATAA)n Simple_repeat Simple_repeat 5 76 0 349 106 0 30 chr1 232156013 232156079 -10508274 - L1MB4 LINE L1 0 6180 6117 379 175 0 25 chr1 232156087 232156167 -10508186 - AluYb8 SINE Alu -113 195 118 2134 126 0 3 chr1 232157432 232157734 -10506619 - AluSq SINE Alu -12 301 1 2354 99 0 0 chr1 232157841 232158135 -10506218 - AluSc SINE Alu -15 294 1 3595 211 55 10 chr1 232159468 232160239 -10504114 + MER21B LTR ERV1 1 805 -58 2534 74 0 0 chr1 232160285 232160596 -10503757 + AluY SINE Alu 1 311 0 1801 184 85 31 chr1 232160962 232161375 -10502978 - MER63B DNA MER1_type 0 436 2 2346 107 0 25 chr1 232161685 232162004 -10502349 + AluSx SINE Alu 1 311 -1 473 300 67 11 chr1 232162879 232163059 -10501294 + MIR SINE MIR 21 210 -52 394 117 0 17 chr1 232163067 232163127 -10501226 + AluJ/FLAM SINE Alu 2 60 -242 1094 131 0 0 chr1 232163741 232163909 -10500444 + AluSg/x SINE Alu 145 312 0 333 171 216 0 chr1 232163921 232164009 -10500344 + MER103 DNA DNA 43 149 -17 2182 108 3 0 chr1 232164513 232164818 -10499535 + AluSx SINE Alu 3 308 -4 2246 78 0 7 chr1 232164818 232165137 -10499216 + AluY SINE Alu 1 317 0 1302 146 0 13 chr1 232166047 232166273 -10498080 + AluJb SINE Alu 87 309 -3 577 272 112 69 chr1 232166431 232166524 -10497829 - MIR SINE MIR -1 261 173 2135 107 7 0 chr1 232166524 232166823 -10497530 + AluSg SINE Alu 1 301 -9 577 272 112 69 chr1 232166823 232166961 -10497392 - MIR SINE MIR -89 173 20 2159 102 7 0 chr1 232167038 232167333 -10497020 + AluSq SINE Alu 1 297 -16 1810 144 6 26 chr1 232167562 232167874 -10496479 + AluSx SINE Alu 1 306 -6 324 102 0 0 chr1 232168013 232168062 -10496291 + (CCCCCT)n Simple_repeat Simple_repeat 4 52 0 211 329 0 14 chr1 232169218 232169288 -10495065 + L2 LINE L2 2424 2492 -822 4097 172 49 20 chr1 232169311 232169662 -10494691 + MER6 DNA MER2_type 1 340 -525 243 0 0 0 chr1 232169662 232169689 -10494664 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 4097 172 49 20 chr1 232169689 232170178 -10494175 + MER6 DNA MER2_type 340 865 0 259 289 104 50 chr1 232170308 232170509 -10493844 + L2 LINE L2 3025 3236 -36 1561 192 77 88 chr1 232170706 232170940 -10493413 + L1MC5 LINE L1 7299 7534 -427 1961 134 0 0 chr1 232170940 232171232 -10493121 + AluSq SINE Alu 1 292 -21 1561 192 77 88 chr1 232171232 232171397 -10492956 + L1MC5 LINE L1 7534 7699 -262 2117 116 0 19 chr1 232171397 232171708 -10492645 - AluSx SINE Alu -7 305 1 1561 192 77 88 chr1 232171708 232171789 -10492564 + L1MC5 LINE L1 7699 7779 -182 2304 60 0 0 chr1 232171789 232172097 -10492256 + AluY SINE Alu 1 308 0 1561 192 77 88 chr1 232172097 232172248 -10492105 + L1MC5 LINE L1 7779 7926 -35 1036 136 0 0 chr1 232172291 232172446 -10491907 + AluSg/x SINE Alu 153 307 -5 622 180 31 0 chr1 232172573 232172701 -10491652 - L1MA9 LINE L1 0 6312 6181 1733 213 6 3 chr1 232172712 232173069 -10491284 + L1 LINE L1 4795 5152 -994 2092 101 29 29 chr1 232173104 232173452 -10490901 - L1MA4 LINE L1 -1 6299 5952 2087 103 0 0 chr1 232173750 232174031 -10490322 + AluSx SINE Alu 8 288 -24 1532 120 142 8 chr1 232174214 232174481 -10489872 + AluSg1 SINE Alu 1 303 -6 328 155 28 0 chr1 232174490 232174561 -10489792 + A-rich Low_complexity Low_complexity 3 75 0 339 232 45 103 chr1 232175794 232175949 -10488404 - MIR3 SINE MIR -47 161 16 228 309 62 49 chr1 232176194 232176356 -10487997 - MIR SINE MIR -50 212 49 4180 80 15 9 chr1 232176460 232176586 -10487767 - MER41A LTR ERV1 -2 552 428 2417 73 0 0 chr1 232176586 232176889 -10487464 + AluSc SINE Alu 1 303 -6 4180 80 15 9 chr1 232176889 232177311 -10487042 - MER41A LTR ERV1 -126 428 1 558 111 11 11 chr1 232177443 232177533 -10486820 + HY4 scRNA scRNA 1 90 -3 539 263 23 85 chr1 232177735 232178215 -10486138 + L1MC4 LINE L1 7000 7456 -586 1471 121 4 26 chr1 232178220 232178452 -10485901 - AluSg/x SINE Alu -5 307 81 2247 139 21 10 chr1 232178488 232178877 -10485476 + L1M4 LINE L1 5287 5679 -505 353 248 14 43 chr1 232178936 232179077 -10485276 - L1MC5 LINE L1 -384 7577 7441 2339 85 3 0 chr1 232179119 232179426 -10484927 + AluSx SINE Alu 1 308 -4 1244 118 101 155 chr1 232179434 232179640 -10484713 + Charlie4a DNA MER1_type 95 310 -1651 2219 109 0 0 chr1 232179640 232179942 -10484411 + AluSg SINE Alu 1 302 -8 1244 118 101 155 chr1 232179942 232179956 -10484397 + Charlie4a DNA MER1_type 310 323 -1638 1961 131 0 0 chr1 232179956 232180273 -10484080 + AluSx SINE Alu 1 317 0 1244 118 101 155 chr1 232180273 232180407 -10483946 + Charlie4a DNA MER1_type 323 429 -1532 889 158 6 18 chr1 232180407 232180571 -10483782 + FRAM SINE Alu 1 162 -4 1244 118 101 155 chr1 232180571 232180627 -10483726 + Charlie4a DNA MER1_type 429 486 -22 25 0 0 0 chr1 232181560 232181585 -10482768 + GC_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 232181997 232182032 -10482321 + GC_rich Low_complexity Low_complexity 1 35 0 542 329 97 9 chr1 232183288 232183504 -10480849 - MIR SINE MIR -21 241 7 180 297 0 14 chr1 232183854 232183928 -10480425 + L2 LINE L2 2906 2978 -294 468 261 164 19 chr1 232184035 232184242 -10480111 + MIR SINE MIR 15 251 -11 338 287 96 43 chr1 232184293 232184408 -10479945 - L2 LINE L2 -16 3256 3136 327 324 147 6 chr1 232184482 232184670 -10479683 - MIR3 SINE MIR -48 214 3 2095 114 7 0 chr1 232185384 232185691 -10478662 - AluSx SINE Alu -3 309 1 2202 52 0 74 chr1 232185919 232186244 -10478109 - AluY SINE Alu -10 301 1 2292 42 0 7 chr1 232186306 232186620 -10477733 + AluY SINE Alu 1 312 0 340 175 42 140 chr1 232186887 232187030 -10477323 - L1MC4 LINE L1 0 8042 7914 192 158 0 0 chr1 232187057 232187095 -10477258 + (CA)n Simple_repeat Simple_repeat 1 38 0 3196 202 46 19 chr1 232187103 232187436 -10476917 - L1MC4 LINE L1 -126 7916 7593 941 190 25 0 chr1 232187436 232187599 -10476754 - FAM SINE Alu -8 167 1 3196 202 46 19 chr1 232187599 232188003 -10476350 - L1MC4 LINE L1 -449 7593 7159 4935 139 12 41 chr1 232188025 232188432 -10475921 - L1MB3 LINE L1 -4 6179 5762 1821 119 25 75 chr1 232188432 232188751 -10475602 + AluJb SINE Alu 1 303 -9 4935 139 12 41 chr1 232188751 232189254 -10475099 - L1MB3 LINE L1 -421 5762 5295 2149 104 3 0 chr1 232189301 232189599 -10474754 + AluSx SINE Alu 6 304 -8 2083 114 0 10 chr1 232189607 232189975 -10474378 + AluSg SINE Alu 7 371 0 1468 161 7 49 chr1 232190047 232190333 -10474020 + AluJo SINE Alu 14 287 -25 793 219 100 41 chr1 232190344 232190713 -10473640 - L1MC4 LINE L1 -75 7967 7577 2123 117 0 0 chr1 232190728 232191026 -10473327 - AluSg SINE Alu -12 298 1 1206 242 27 7 chr1 232191026 232191324 -10473029 - L1MC4 LINE L1 -406 7636 7333 1862 103 9 69 chr1 232191616 232191936 -10472417 - AluSp SINE Alu -12 301 1 888 278 36 99 chr1 232192054 232192285 -10472068 - L2 LINE L2 0 3313 3128 2207 95 3 3 chr1 232192285 232192589 -10471764 + AluSx SINE Alu 1 304 -8 888 278 36 99 chr1 232192589 232192850 -10471503 - L2 LINE L2 -185 3128 2852 997 92 35 203 chr1 232193192 232193316 -10471037 - Tigger1 DNA MER2_type 0 2418 2275 6416 82 2 25 chr1 232193316 232193585 -10470768 + L1PA14 LINE L1 5030 5304 -857 1899 147 0 0 chr1 232193585 232193870 -10470483 + AluSx SINE Alu 1 285 -27 243 0 0 0 chr1 232193870 232193897 -10470456 + (CA)n Simple_repeat Simple_repeat 2 28 0 6416 82 2 25 chr1 232193897 232193976 -10470377 + L1PA14 LINE L1 5303 5382 -779 2324 97 3 0 chr1 232193976 232194284 -10470069 + AluSp SINE Alu 1 309 -4 2492 56 0 3 chr1 232194284 232194590 -10469763 + AluY SINE Alu 1 305 -6 6416 82 2 25 chr1 232194590 232195378 -10468975 + L1PA14 LINE L1 5380 6148 -13 997 92 35 203 chr1 232195378 232195402 -10468951 - Tigger1 DNA MER2_type -143 2275 2249 2130 108 20 0 chr1 232195402 232195708 -10468645 + AluSx SINE Alu 1 312 0 729 196 0 8 chr1 232195718 232195851 -10468502 + FLAM_C SINE Alu 2 133 0 997 92 35 203 chr1 232195851 232195951 -10468402 - Tigger1 DNA MER2_type -179 2239 2202 819 210 0 6 chr1 232195940 232196097 -10468256 - Tigger1 DNA MER2_type -2261 157 2 * 249 366 0 9 chr1 232196388 232196500 -10467853 + CT-rich Low_complexity Low_complexity 3 113 0 1837 151 10 3 chr1 232196914 232197218 -10467135 + AluJb SINE Alu 1 306 -6 779 162 0 0 chr1 232197602 232197719 -10466634 - FLAM_C SINE Alu -24 119 3 372 350 49 6 chr1 232198842 232198997 -10465356 - MIR SINE MIR -58 204 40 2111 116 0 0 chr1 232198997 232199291 -10465062 - AluSx SINE Alu -12 300 7 285 183 61 24 chr1 232199515 232199597 -10464756 - L1ME LINE L1 -319 5802 5718 2238 90 0 7 chr1 232199625 232199926 -10464427 - AluSq SINE Alu -10 303 5 305 185 31 0 chr1 232200007 232200072 -10464281 - L1ME LINE L1 -477 5644 5578 359 242 44 11 chr1 232200353 232200444 -10463909 - MIR SINE MIR -108 154 61 382 190 0 38 chr1 232201266 232201345 -10463008 + MLT1J LTR MaLR 234 309 -202 1530 139 10 47 chr1 232201538 232201839 -10462514 + AluJo SINE Alu 1 290 -22 948 174 6 6 chr1 232201855 232202066 -10462287 + FRAM SINE Alu 3 166 0 811 276 79 15 chr1 232202146 232202476 -10461877 - L2 LINE L2 -131 3182 2832 350 205 33 13 chr1 232202476 232202627 -10461726 + (TG)n Simple_repeat Simple_repeat 1 154 0 286 225 29 7 chr1 232202646 232202784 -10461569 + (TG)n Simple_repeat Simple_repeat 1 141 0 356 125 34 11 chr1 232202840 232202928 -10461425 + (TG)n Simple_repeat Simple_repeat 2 91 0 232 214 56 0 chr1 232204002 232204091 -10460262 + (TA)n Simple_repeat Simple_repeat 1 94 0 1772 159 60 70 chr1 232204498 232204745 -10459608 - MSTD LTR MaLR -1 395 152 1849 152 7 0 chr1 232204745 232205047 -10459306 - AluSx SINE Alu -8 304 1 1772 159 60 70 chr1 232205047 232205196 -10459157 - MSTD LTR MaLR -244 152 3 2214 50 0 14 chr1 232205588 232205867 -10458486 - AluY SINE Alu -7 304 30 184 233 123 41 chr1 232205917 232205990 -10458363 + L2 LINE L2 3220 3298 -15 2197 91 3 10 chr1 232205994 232206302 -10458051 + AluSq SINE Alu 1 306 -7 764 167 0 0 chr1 232206519 232206639 -10457714 + AluJb SINE Alu 174 293 -19 2154 89 0 17 chr1 232206764 232207090 -10457263 - AluSx SINE Alu 0 321 1 1079 137 23 0 chr1 232207170 232207345 -10457008 + AluSg/x SINE Alu 130 308 -2 2301 78 0 3 chr1 232207874 232208180 -10456173 - AluY SINE Alu -6 305 1 342 171 66 53 chr1 232208180 232208256 -10456097 + MIR SINE MIR 186 262 0 368 331 7 7 chr1 232208481 232208617 -10455736 - MLT1J LTR MaLR -258 253 118 260 237 102 0 chr1 232208713 232208772 -10455581 - MLT1J LTR MaLR -446 65 1 2080 120 3 0 chr1 232208929 232209228 -10455125 - AluSx SINE Alu -12 300 1 342 237 24 50 chr1 232209233 232209329 -10455024 - L1ME LINE L1 -379 5788 5696 2189 118 0 0 chr1 232209329 232209626 -10454727 - AluSx SINE Alu -15 297 1 342 237 24 50 chr1 232209626 232209673 -10454680 - L1ME LINE L1 -471 5696 5649 259 286 107 0 chr1 232209916 232210000 -10454353 - MIR SINE MIR -97 165 73 2157 107 3 3 chr1 232210007 232210315 -10454038 - AluSx SINE Alu -4 308 1 3104 178 65 97 chr1 232210337 232211035 -10453318 - L1ME1 LINE L1 -5 6161 5442 1594 153 0 68 chr1 232211035 232211361 -10452992 - AluJo SINE Alu 0 312 9 3104 178 65 97 chr1 232211361 232211377 -10452976 - L1ME1 LINE L1 -724 5442 5427 2044 115 26 7 chr1 232211377 232211682 -10452671 - AluSx SINE Alu -1 311 1 3104 178 65 97 chr1 232211682 232211924 -10452429 - L1ME1 LINE L1 -739 5427 5187 1906 147 19 32 chr1 232211924 232212238 -10452115 - AluJo SINE Alu -2 310 1 3104 178 65 97 chr1 232212238 232212326 -10452027 - L1ME1 LINE L1 -979 5187 5098 2357 207 16 37 chr1 232212327 232212896 -10451457 + MER74A LTR ERVL 1 557 -1 1256 204 48 60 chr1 232212896 232212961 -10451392 - L1ME1 LINE L1 -1045 5101 5037 857 222 82 0 chr1 232212961 232213168 -10451185 + MER58A DNA MER1_type 1 224 0 1256 204 48 60 chr1 232213168 232213499 -10450854 - L1ME1 LINE L1 -1109 5037 4710 2794 76 0 0 chr1 232213545 232213915 -10450438 - LTR10A LTR ERV1 -62 547 178 626 226 54 6 chr1 232213927 232214095 -10450258 - LTR10A LTR ERV1 -357 252 77 313 213 0 0 chr1 232214250 232214325 -10450028 - LTR10A LTR ERV1 -357 252 178 397 160 0 0 chr1 232214337 232214412 -10449941 - LTR10A LTR ERV1 -357 252 178 284 190 0 0 chr1 232214412 232214470 -10449883 - LTR10A LTR ERV1 -374 235 178 397 160 0 0 chr1 232214482 232214557 -10449796 - LTR10A LTR ERV1 -357 252 178 354 187 0 0 chr1 232214569 232214644 -10449709 - LTR10A LTR ERV1 -357 252 178 354 187 0 0 chr1 232214656 232214731 -10449622 - LTR10A LTR ERV1 -357 252 178 354 187 0 0 chr1 232214743 232214818 -10449535 - LTR10A LTR ERV1 -357 252 178 418 147 0 0 chr1 232214830 232214905 -10449448 - LTR10A LTR ERV1 -357 252 178 305 172 0 0 chr1 232214905 232214963 -10449390 - LTR10A LTR ERV1 -374 235 178 418 147 0 0 chr1 232214975 232215050 -10449303 - LTR10A LTR ERV1 -357 252 178 397 160 0 0 chr1 232215091 232215166 -10449187 - LTR10A LTR ERV1 -357 252 178 1080 189 101 18 chr1 232215186 232215472 -10448881 - LTR10A LTR ERV1 -299 310 1 480 94 0 0 chr1 232215511 232215575 -10448778 - AluS SINE Alu -247 65 2 2105 127 0 20 chr1 232215937 232216236 -10448117 + AluSx SINE Alu 1 293 -19 837 76 71 13 chr1 232216236 232216470 -10447883 + GA-rich Low_complexity Low_complexity 1 247 0 614 199 30 23 chr1 232216565 232216696 -10447657 + MIR SINE MIR 7 138 -124 2240 122 0 7 chr1 232217124 232217428 -10446925 - AluSx SINE Alu -10 302 1 416 326 112 17 chr1 232218445 232218678 -10445675 - MIR SINE MIR 0 262 8 206 250 0 9 chr1 232219149 232219265 -10445088 + (TG)n Simple_repeat Simple_repeat 2 116 0 410 194 28 11 chr1 232219277 232220037 -10444316 + (TG)n Simple_repeat Simple_repeat 1 773 0 231 277 92 35 chr1 232220188 232220329 -10444024 - LTR11 LTR ERV -178 506 358 888 120 0 0 chr1 232220338 232220455 -10443898 + FLAM_C SINE Alu 1 117 -26 2335 58 34 10 chr1 232222138 232222432 -10441921 + AluY SINE Alu 1 301 -10 559 168 3 53 chr1 232222433 232222650 -10441703 + AluJ SINE Alu 86 316 0 610 270 69 0 chr1 232222978 232223167 -10441186 - MER63A DNA MER1_type 0 210 9 207 269 121 99 chr1 232223259 232223400 -10440953 + MIR SINE MIR 49 192 -70 2434 101 0 0 chr1 232223650 232223957 -10440396 - AluSx SINE Alu -5 307 1 1938 56 45 37 chr1 232223967 232224236 -10440117 - AluY SINE Alu -1 310 40 984 51 0 0 chr1 232224452 232224570 -10439783 + AluY SINE Alu 179 296 -15 249 243 199 15 chr1 232224587 232224723 -10439630 + L1ME4a LINE L1 5927 6087 -34 230 247 165 0 chr1 232224788 232224873 -10439480 - MIR3 SINE MIR -3 205 107 22 0 0 0 chr1 232225068 232225090 -10439263 + AT_rich Low_complexity Low_complexity 1 22 0 1652 183 37 0 chr1 232225488 232225761 -10438592 + AluJo SINE Alu 14 296 -16 2303 119 0 6 chr1 232225769 232226081 -10438272 + AluSx SINE Alu 1 310 -2 804 205 125 73 chr1 232226439 232226509 -10437844 - MER33 DNA MER1_type -2264 321 256 2081 132 3 32 chr1 232226509 232226820 -10437533 - AluSx SINE Alu -10 302 1 804 205 125 73 chr1 232226820 232226902 -10437451 - MER33 DNA MER1_type -2329 256 180 2366 98 3 0 chr1 232226902 232227199 -10437154 + AluSp SINE Alu 1 298 -15 804 205 125 73 chr1 232227199 232227348 -10437005 - MER33 DNA MER1_type -2405 180 3 271 383 28 19 chr1 232227483 232227697 -10436656 - MIR SINE MIR -19 243 28 22 0 0 0 chr1 232230650 232230672 -10433681 + AT_rich Low_complexity Low_complexity 1 22 0 271 379 143 0 chr1 232231081 232231221 -10433132 + MIR SINE MIR 48 207 -55 190 327 40 40 chr1 232231412 232231513 -10432840 - L2 LINE L2 -85 3228 3128 1849 196 33 33 chr1 232231565 232232018 -10432335 - MLT1C LTR MaLR 0 467 15 313 354 20 14 chr1 232232055 232232202 -10432151 - L2 LINE L2 -236 3036 2889 195 424 40 0 chr1 232232507 232232632 -10431721 + L2 LINE L2 3136 3265 -7 630 159 63 8 chr1 232232835 232232961 -10431392 + FLAM_C SINE Alu 1 133 0 1832 190 0 3 chr1 232232976 232233276 -10431077 + AluJb SINE Alu 3 301 -11 2154 126 20 0 chr1 232233357 232233650 -10430703 + AluSp SINE Alu 1 299 -14 2431 102 0 0 chr1 232233743 232234056 -10430297 - AluSp SINE Alu 0 313 1 316 287 28 0 chr1 232234179 232234287 -10430066 + L1ME4a LINE L1 5782 5892 -229 2059 125 7 4 chr1 232234303 232234604 -10429749 - AluSq SINE Alu 0 302 1 306 216 39 78 chr1 232234675 232234777 -10429576 + L1ME4a LINE L1 6020 6117 -4 1878 187 0 0 chr1 232234818 232235117 -10429236 + AluJb SINE Alu 1 299 -13 2345 91 0 3 chr1 232235139 232235435 -10428918 - AluSg SINE Alu -15 295 1 350 167 13 0 chr1 232235988 232236066 -10428287 - L1MB4 LINE L1 -6 6174 6096 507 203 8 8 chr1 232236066 232236181 -10428172 - L1MB3 LINE L1 -19 6164 6042 313 165 0 0 chr1 232236566 232236639 -10427714 - AluSq SINE Alu 0 300 238 1769 101 0 8 chr1 232236850 232237087 -10427266 - AluSq SINE Alu -78 235 1 1246 127 11 0 chr1 232237089 232237270 -10427083 - AluSg/x SINE Alu -10 300 118 524 62 0 37 chr1 232237283 232237364 -10426989 - FLAM_C SINE Alu -3 140 63 206 217 14 0 chr1 232238820 232238889 -10425464 + GA-rich Low_complexity Low_complexity 3 72 0 366 330 66 25 chr1 232239130 232239327 -10425026 - MIR SINE MIR -37 225 21 2368 92 3 0 chr1 232239451 232239754 -10424599 - AluSq SINE Alu -9 304 1 336 335 98 5 chr1 232240026 232240229 -10424124 + L2 LINE L2 3012 3233 -80 2182 106 0 0 chr1 232240752 232241072 -10423281 - AluSx SINE Alu 0 320 1 356 185 25 0 chr1 232241075 232241156 -10423197 - L1MA2 LINE L1 -166 6138 6056 187 256 0 93 chr1 232241524 232241610 -10422743 + MIR SINE MIR 170 247 -15 1892 163 42 31 chr1 232241682 232242068 -10422285 + MLT1B LTR MaLR 1 390 0 1636 177 4 8 chr1 232242318 232242584 -10421769 - AluJo SINE Alu -36 276 12 232 97 0 0 chr1 232243165 232243196 -10421157 + LTR51 LTR ERV1 1 31 -640 1385 176 132 0 chr1 232243196 232243304 -10421049 + AluJo SINE Alu 1 93 -221 447 19 0 0 chr1 232243304 232243356 -10420997 + (CA)n Simple_repeat Simple_repeat 1 52 0 1385 176 132 0 chr1 232243356 232243528 -10420825 + AluJo SINE Alu 93 314 0 3054 169 59 7 chr1 232243528 232244136 -10420217 + LTR51 LTR ERV1 15 654 -17 2189 127 3 0 chr1 232244136 232244443 -10419910 - AluSq SINE Alu -5 308 1 1978 102 73 4 chr1 232244687 232244962 -10419391 - AluSx SINE Alu -18 294 1 252 295 54 33 chr1 232245328 232245497 -10418856 + MIR SINE MIR 45 213 -49 2187 113 0 0 chr1 232245855 232246172 -10418181 - AluSx SINE Alu 0 317 1 1054 96 7 0 chr1 232246172 232246307 -10418046 - AluSq/x SINE Alu -177 136 1 204 351 14 0 chr1 232246461 232246535 -10417818 - MIR SINE MIR -31 231 157 1234 209 58 17 chr1 232247603 232247947 -10416406 + MER69 DNA AcHobo 1872 2229 -297 986 174 0 0 chr1 232247964 232248125 -10416228 - FRAM SINE Alu 0 176 16 977 234 82 7 chr1 232248125 232248407 -10415946 + MER69 DNA AcHobo 2221 2523 -3 2289 92 0 26 chr1 232248876 232249180 -10415173 - AluSg SINE Alu -14 296 1 419 223 9 36 chr1 232249491 232249603 -10414750 + L1MB7 LINE L1 6033 6141 -43 2020 129 7 26 chr1 232251030 232251333 -10413020 - AluSx SINE Alu -15 297 1 550 300 29 62 chr1 232251397 232251640 -10412713 + LTR67 LTR ERVL 8 242 -315 681 330 94 13 chr1 232251746 232252128 -10412225 + MLT1L LTR MaLR 203 615 0 867 247 25 37 chr1 232252139 232252382 -10411971 + LTR67 LTR ERVL 309 548 -9 2134 115 3 32 chr1 232252835 232253148 -10411205 - AluSx SINE Alu -2 310 7 546 308 109 45 chr1 232253481 232253922 -10410431 + ERVL LTR ERVL 972 1440 -4324 1181 70 0 0 chr1 232254306 232254448 -10409905 + AluSg/x SINE Alu 161 302 -10 2498 68 0 19 chr1 232254448 232254759 -10409594 + AluY SINE Alu 1 305 -6 2450 76 0 7 chr1 232254759 232255062 -10409291 + AluSx SINE Alu 1 301 -11 434 289 86 24 chr1 232255062 232255432 -10408921 + ERVL LTR ERVL 2376 2822 -2942 1450 305 42 13 chr1 232255504 232256028 -10408325 + ERVL LTR ERVL 2929 3467 -2297 1926 304 105 18 chr1 232256052 232257002 -10407351 + ERVL LTR ERVL 4059 5091 -673 489 113 0 12 chr1 232257255 232257335 -10407018 + MADE1 DNA Mariner 2 80 0 752 70 8 31 chr1 232257553 232257681 -10406672 + (TTCC)n Simple_repeat Simple_repeat 4 128 0 2078 109 0 4 chr1 232257681 232257947 -10406406 - AluSx SINE Alu -31 281 15 833 277 32 25 chr1 232258109 232258423 -10405930 + MLT1J LTR MaLR 3 318 -193 194 358 23 62 chr1 232258817 232258993 -10405360 - L2 LINE L2 -516 2798 2630 22 35 0 0 chr1 232259839 232259868 -10404485 + AT_rich Low_complexity Low_complexity 1 29 0 206 260 19 36 chr1 232259961 232260112 -10404241 + G-rich Low_complexity Low_complexity 1 148 0 24 0 0 0 chr1 232260216 232260240 -10404113 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr1 232260354 232260378 -10403975 + GC_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr1 232260402 232260432 -10403921 + GC_rich Low_complexity Low_complexity 1 30 0 1680 153 22 0 chr1 232261898 232262173 -10402180 + AluJb SINE Alu 1 281 -31 555 147 0 21 chr1 232262093 232262173 -10402180 + AluSg/x SINE Alu 199 296 -13 202 94 0 0 chr1 232262173 232262205 -10402148 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 555 147 0 21 chr1 232262205 232262219 -10402134 + AluSg/x SINE Alu 296 309 0 305 217 22 76 chr1 232263050 232263142 -10401211 + MER5B DNA MER1_type 25 111 -67 1807 98 0 0 chr1 232263185 232263421 -10400932 - AluSc SINE Alu -73 236 1 617 270 65 35 chr1 232263425 232263625 -10400728 - MIR SINE MIR -38 224 19 1763 126 83 0 chr1 232263645 232263922 -10400431 - AluSq SINE Alu -13 300 1 1895 118 18 0 chr1 232264601 232264873 -10399480 - AluSx SINE Alu -35 277 1 248 300 125 0 chr1 232266603 232266763 -10397590 + MIR SINE MIR 13 192 -70 187 381 0 0 chr1 232267349 232267412 -10396941 - L2 LINE L2 -5 3308 3246 663 226 0 0 chr1 232267617 232268116 -10396237 + (TG)n Simple_repeat Simple_repeat 1 499 0 259 167 24 0 chr1 232269140 232269182 -10395171 - MER58 DNA MER1_type -43 2377 130 2467 63 0 0 chr1 232269183 232269486 -10394867 - AluSc SINE Alu -6 303 1 23 0 0 0 chr1 232269916 232269939 -10394414 + AT_rich Low_complexity Low_complexity 1 23 0 1776 168 3 0 chr1 232269946 232270232 -10394121 + AluJb SINE Alu 3 289 -23 2000 123 14 0 chr1 232270240 232270533 -10393820 + AluSq SINE Alu 1 297 -16 2162 116 0 0 chr1 232270540 232270850 -10393503 + AluSg SINE Alu 1 310 0 2162 199 12 5 chr1 232270881 232271312 -10393041 - L1MB5 LINE L1 -8 6166 5733 210 347 163 0 chr1 232271324 232271422 -10392931 - L2 LINE L2 -25 3247 3134 225 352 109 29 chr1 232272047 232272257 -10392096 - L3 LINE CR1 -233 1344 1118 249 294 104 25 chr1 232273035 232273198 -10391155 - MIR3 SINE MIR -9 199 24 294 235 0 0 chr1 232273692 232273773 -10390580 + (CA)n Simple_repeat Simple_repeat 1 81 0 190 224 13 26 chr1 232274019 232274095 -10390258 + GA-rich Low_complexity Low_complexity 1 75 0 259 299 0 11 chr1 232274732 232274819 -10389534 - L1ME4a LINE L1 -195 5926 5841 188 275 84 70 chr1 232274890 232275032 -10389321 - L2 LINE L2 -260 3012 2869 1065 161 0 0 chr1 232275335 232275490 -10388863 + FRAM SINE Alu 1 155 -11 830 203 0 0 chr1 232275680 232275843 -10388510 + FRAM SINE Alu 1 163 -13 1073 163 15 25 chr1 232275847 232276043 -10388310 - Tigger2a DNA MER2_type -240 194 1 197 193 0 18 chr1 232278074 232278131 -10386222 + CT-rich Low_complexity Low_complexity 2 57 0 206 132 53 26 chr1 232278161 232278199 -10386154 - MIR SINE MIR -139 69 31 2201 97 3 3 chr1 232278318 232278628 -10385725 - AluSx SINE Alu -2 310 1 331 256 50 50 chr1 232278701 232278822 -10385531 - MIR SINE MIR -52 210 90 275 305 68 8 chr1 232278960 232279078 -10385275 - MIR SINE MIR -120 142 18 2543 55 0 0 chr1 232279558 232279866 -10384487 - AluY SINE Alu 0 311 4 294 235 0 0 chr1 232280627 232280708 -10383645 + (CA)n Simple_repeat Simple_repeat 1 81 0 861 264 34 10 chr1 232281712 232281920 -10382433 - MIR SINE MIR -22 240 28 2319 54 7 0 chr1 232281924 232282219 -10382134 - AluY SINE Alu -14 297 1 1029 261 49 0 chr1 232282299 232282525 -10381828 + MER8 DNA MER2_type 3 239 0 315 0 0 0 chr1 232283757 232283792 -10380561 + (GA)n Simple_repeat Simple_repeat 2 36 0 2035 117 0 0 chr1 232283794 232284075 -10380278 - AluSq SINE Alu -32 281 1 416 147 53 32 chr1 232284561 232284656 -10379697 - MER103 DNA DNA -7 159 63 337 167 0 0 chr1 232284763 232284817 -10379536 - L1ME4a LINE L1 -465 5656 5603 199 318 100 36 chr1 232285152 232285262 -10379091 - MIR3 SINE MIR -41 167 51 317 250 60 40 chr1 232285307 232285407 -10378946 - L1MC4 LINE L1 -1327 6715 6614 533 110 30 40 chr1 232285574 232285674 -10378679 + AluS SINE Alu 2 100 -213 460 191 0 22 chr1 232285692 232285781 -10378572 - FLAM_A SINE Alu -15 127 41 1285 144 47 31 chr1 232285983 232286239 -10378114 - L1MA9 LINE L1 -5 6307 6048 951 99 31 105 chr1 232286245 232286436 -10377917 + L1MA9 LINE L1 5857 6033 -279 2038 77 15 0 chr1 232287015 232287275 -10377078 + AluSq SINE Alu 1 264 -49 1508 187 97 7 chr1 232287541 232287851 -10376502 + MER2 DNA MER2_type 8 345 0 217 260 119 32 chr1 232287874 232287991 -10376362 + MIR SINE MIR 43 167 -63 22 0 0 0 chr1 232288103 232288125 -10376228 + AT_rich Low_complexity Low_complexity 1 22 0 373 307 86 29 chr1 232288686 232288826 -10375527 - L2 LINE L2 0 3272 3125 921 106 34 73 chr1 232289230 232289266 -10375087 - L1MB3 LINE L1 -2 6181 6145 2110 73 10 7 chr1 232289266 232289554 -10374799 - AluSg SINE Alu -12 298 10 921 106 34 73 chr1 232289554 232289696 -10374657 - L1MB3 LINE L1 -38 6145 6010 246 70 140 53 chr1 232289765 232289822 -10374531 + MER41A LTR ERV1 405 466 -88 1357 126 119 50 chr1 232289848 232290125 -10374228 + AluJo SINE Alu 5 300 -12 22 0 0 0 chr1 232290125 232290147 -10374206 + AT_rich Low_complexity Low_complexity 1 22 0 2227 116 0 0 chr1 232291897 232292207 -10372146 + AluSx SINE Alu 1 310 -2 22 94 0 0 chr1 232292374 232292438 -10371915 + AT_rich Low_complexity Low_complexity 1 64 0 2063 129 13 66 chr1 232292744 232292833 -10371520 - MER46B DNA MER2_type -2495 236 144 2007 132 10 0 chr1 232292833 232293136 -10371217 + AluSq SINE Alu 1 306 -7 2063 129 13 66 chr1 232293136 232293427 -10370926 - MER46B DNA MER2_type -2587 144 1 2193 88 20 3 chr1 232293902 232294197 -10370156 + AluSq SINE Alu 1 300 -13 1085 130 49 72 chr1 232294821 232295044 -10369309 - AluJo SINE Alu -7 305 88 523 237 128 41 chr1 232295385 232295604 -10368749 - L1MB8 LINE L1 0 6178 5941 2830 70 0 11 chr1 232296019 232296378 -10367975 + THE1A LTR MaLR 1 355 0 11944 88 14 0 chr1 232296378 232297937 -10366416 + THE1A-int LTR MaLR 1 1580 0 2819 81 0 6 chr1 232297937 232298294 -10366059 + THE1A LTR MaLR 1 355 0 17009 109 14 35 chr1 232298553 232302180 -10362173 - L1P3 LINE L1 -2840 3621 12 2089 122 0 0 chr1 232302276 232302580 -10361773 - AluSx SINE Alu -6 306 3 2639 160 38 13 chr1 232302666 232303323 -10361030 - L1MB8 LINE L1 -433 5751 5080 1206 211 18 13 chr1 232303335 232303562 -10360791 + Tigger5 DNA MER2_type 3 230 -2093 336 200 67 13 chr1 232303561 232303636 -10360717 + Tigger5 DNA MER2_type 2245 2323 0 * 683 168 8 0 chr1 232303647 232303778 -10360575 - L1MB8 LINE L1 -1081 5065 4934 6375 96 51 17 chr1 232304365 232305499 -10358854 - L1MA1 LINE L1 -6 6296 5112 1990 147 0 0 chr1 232305520 232305827 -10358526 - AluSx SINE Alu -5 307 1 24 0 0 0 chr1 232305830 232305854 -10358499 + AT_rich Low_complexity Low_complexity 1 24 0 11197 204 69 15 chr1 232305855 232307136 -10357217 - L1PB1 LINE L1 -2 6865 5654 1882 129 0 0 chr1 232307136 232307408 -10356945 - AluSx SINE Alu -40 272 1 11197 204 69 15 chr1 232307408 232307596 -10356757 - L1PB1 LINE L1 -1213 5654 5478 1889 146 3 3 chr1 232307596 232307891 -10356462 - AluSx SINE Alu -17 295 1 11197 204 69 15 chr1 232307891 232311799 -10352554 - L1PB1 LINE L1 -1389 5478 1113 1222 140 5 23 chr1 232311779 232311993 -10352360 - L1PB1 LINE L1 -6653 210 1 * 5991 156 100 8 chr1 232312155 232312454 -10351899 - L1 LINE L1 -1052 5094 4824 2353 91 0 0 chr1 232312454 232312763 -10351590 - AluY SINE Alu -2 309 1 5991 156 100 8 chr1 232312763 232313956 -10350397 - L1 LINE L1 -1322 4824 3478 540 197 25 0 chr1 232314125 232314247 -10350106 - L1 LINE L1 -2672 3474 3350 1890 135 7 7 chr1 232314931 232315227 -10349126 - AluSx SINE Alu -16 296 1 319 132 19 0 chr1 232315257 232315310 -10349043 + MER103 DNA DNA 78 131 -35 1053 262 33 0 chr1 232315517 232315761 -10348592 - MIR SINE MIR -5 257 6 731 250 75 38 chr1 232316951 232317163 -10347190 - MIR SINE MIR -3 259 40 2205 68 4 0 chr1 232319762 232320066 -10344287 + AluY SINE Alu 1 305 0 202 298 0 0 chr1 232321165 232321212 -10343141 - L2 LINE L2 -16 3297 3251 385 174 0 14 chr1 232322344 232322413 -10341940 + L2 LINE L2 3199 3266 -47 327 283 81 65 chr1 232322978 232323286 -10341067 + L1MC4a LINE L1 4711 5023 -1123 329 233 123 31 chr1 232323329 232323612 -10340741 + L1MC4a LINE L1 5097 5412 -747 821 191 0 0 chr1 232323637 232323773 -10340580 + FRAM SINE Alu 11 146 -30 541 294 75 26 chr1 232323800 232324478 -10339875 + L1MC4a LINE L1 5431 6175 -1633 559 307 71 5 chr1 232324580 232324792 -10339561 + MIR SINE MIR 25 250 -12 193 297 168 10 chr1 232328285 232328386 -10335967 + L2 LINE L2 3156 3272 0 245 257 47 31 chr1 232328549 232328697 -10335656 - MIR SINE MIR -37 225 21 1668 162 13 36 chr1 232329075 232329384 -10334969 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr1 232330044 232330065 -10334288 + AT_rich Low_complexity Low_complexity 1 21 0 2031 128 3 10 chr1 232331454 232331752 -10332601 - AluSx SINE Alu -16 296 1 268 342 36 36 chr1 232331858 232331969 -10332384 - L2 LINE L2 -4 3268 3158 2079 125 13 0 chr1 232332269 232332574 -10331779 + AluSq SINE Alu 1 309 -4 292 255 89 70 chr1 232332971 232333128 -10331225 + MIR SINE MIR 57 216 -46 1013 254 27 66 chr1 232333326 232333660 -10330693 - MER46C DNA MER2_type -17 321 1 727 184 0 0 chr1 232333679 232333804 -10330549 + FLAM_A SINE Alu 1 125 -8 1971 146 0 0 chr1 232334999 232335286 -10329067 + AluSx SINE Alu 1 287 -25 400 125 0 0 chr1 232336812 232336876 -10327477 + L1MB3 LINE L1 6088 6151 -32 229 234 13 65 chr1 232338086 232338163 -10326190 - MIR SINE MIR -98 164 92 2126 108 14 0 chr1 232338490 232338786 -10325567 + AluSq SINE Alu 1 300 -13 23 0 0 0 chr1 232338917 232338940 -10325413 + AT_rich Low_complexity Low_complexity 1 23 0 2195 111 3 3 chr1 232339677 232339984 -10324369 + AluSx SINE Alu 2 308 -4 637 168 8 38 chr1 232340159 232340290 -10324063 + FLAM_A SINE Alu 1 127 -6 1168 134 125 0 chr1 232340620 232340844 -10323509 + L1MA8 LINE L1 5999 6250 -41 266 320 90 19 chr1 232341297 232341453 -10322900 + L2 LINE L2 2884 3050 -222 21 36 0 0 chr1 232342010 232342038 -10322315 + AT_rich Low_complexity Low_complexity 1 28 0 2304 93 3 0 chr1 232342375 232342677 -10321676 + AluSq SINE Alu 1 303 -10 1913 92 50 14 chr1 232342677 232342960 -10321393 + AluSg1 SINE Alu 1 293 -16 22 35 0 0 chr1 232343831 232343860 -10320493 + AT_rich Low_complexity Low_complexity 1 29 0 235 225 0 25 chr1 232344230 232344310 -10320043 - Charlie5 DNA MER1_type 0 2620 2543 704 202 158 0 chr1 232344312 232344515 -10319838 - Charlie5 DNA MER1_type -2377 235 1 233 303 275 0 chr1 232344562 232344704 -10319649 + MER5A DNA MER1_type 9 189 0 638 269 6 19 chr1 232344712 232344872 -10319481 - MER5B DNA MER1_type 0 178 21 225 219 0 0 chr1 232344910 232344951 -10319402 + L2 LINE L2 3214 3254 -18 2233 88 3 7 chr1 232345281 232345575 -10318778 - AluSq SINE Alu -20 293 1 2321 90 10 0 chr1 232346465 232346764 -10317589 - AluSg SINE Alu -8 302 1 1629 134 8 4 chr1 232347198 232347444 -10316909 - AluSx SINE Alu -20 292 46 23 54 0 0 chr1 232347682 232347719 -10316634 + AT_rich Low_complexity Low_complexity 1 37 0 833 158 0 0 chr1 232347744 232347871 -10316482 + FRAM SINE Alu 4 130 -46 27 0 0 0 chr1 232347873 232347900 -10316453 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr1 232348062 232348090 -10316263 + AT_rich Low_complexity Low_complexity 1 28 0 675 198 0 0 chr1 232348307 232348433 -10315920 - FLAM_A SINE Alu -7 126 1 999 217 46 18 chr1 232348583 232348800 -10315553 + MER58A DNA MER1_type 2 224 0 333 118 0 0 chr1 232349138 232349189 -10315164 + (TA)n Simple_repeat Simple_repeat 1 51 0 366 250 0 22 chr1 232349315 232349407 -10314946 + L1MC4 LINE L1 6614 6703 -1339 352 300 0 0 chr1 232349361 232349451 -10314902 - L1MC4 LINE L1 -1339 6703 6614 * 1816 169 3 0 chr1 232349458 232349753 -10314600 - AluSx SINE Alu -16 296 1 839 256 66 47 chr1 232350205 232350522 -10313831 - L2 LINE L2 -5 3308 2986 21 36 0 0 chr1 232350582 232350610 -10313743 + AT_rich Low_complexity Low_complexity 1 28 0 1932 111 18 11 chr1 232350810 232351109 -10313244 + AluSx SINE Alu 1 301 0 25 51 0 0 chr1 232351192 232351231 -10313122 + AT_rich Low_complexity Low_complexity 1 39 0 2455 64 0 0 chr1 232351328 232351624 -10312729 + AluY SINE Alu 1 296 -15 706 272 107 5 chr1 232352603 232352827 -10311526 + MIR SINE MIR 4 250 -12 22 0 0 0 chr1 232352926 232352948 -10311405 + AT_rich Low_complexity Low_complexity 1 22 0 249 196 39 20 chr1 232354322 232354373 -10309980 - L3 LINE CR1 -20 1557 1506 1686 157 21 21 chr1 232354547 232354833 -10309520 - AluJo SINE Alu -24 288 3 249 196 39 20 chr1 232355491 232355542 -10308811 - L3 LINE CR1 -20 1557 1506 1686 157 21 21 chr1 232355716 232356002 -10308351 - AluJo SINE Alu -24 288 3 312 238 125 0 chr1 232356006 232356086 -10308267 + L1MC4 LINE L1 6613 6702 -1340 1811 140 3 36 chr1 232356089 232356397 -10307956 - AluSx SINE Alu -14 298 1 432 142 88 18 chr1 232356402 232356515 -10307838 + L1MA10 LINE L1 6212 6332 -2 1049 307 189 2 chr1 232356524 232356670 -10307683 + L1ME3A LINE L1 5493 5610 -560 1681 179 3 23 chr1 232356670 232356977 -10307376 - AluJo SINE Alu -11 301 1 1049 307 189 2 chr1 232356977 232357390 -10306963 + L1ME3A LINE L1 5610 6157 -13 2167 271 107 30 chr1 232357576 232358694 -10305659 + L2 LINE L2 2108 3306 -7 418 277 159 63 chr1 232358694 232359297 -10305056 + L1MB8 LINE L1 5354 6014 -107 2333 107 0 0 chr1 232359541 232359840 -10304513 - AluSq SINE Alu -14 299 1 2261 94 7 7 chr1 232360704 232361003 -10303350 + AluSx SINE Alu 1 299 -13 422 145 0 12 chr1 232361087 232361170 -10303183 + (TA)n Simple_repeat Simple_repeat 2 83 0 309 209 0 0 chr1 232361209 232361276 -10303077 + (CATA)n Simple_repeat Simple_repeat 3 69 0 830 272 58 10 chr1 232361354 232361666 -10302687 + L1ME3A LINE L1 5556 5882 -288 39 0 0 0 chr1 232361703 232361742 -10302611 + AT_rich Low_complexity Low_complexity 1 39 0 257 338 13 26 chr1 232364080 232364157 -10300196 - L2 LINE L2 -47 3225 3150 312 130 22 0 chr1 232364171 232364217 -10300136 + AluJ/FRAM SINE Alu 222 268 -34 441 293 65 37 chr1 232364291 232364537 -10299816 - L2 LINE L2 -3 3310 3058 255 340 44 13 chr1 232364553 232364712 -10299641 - L2 LINE L2 -383 2931 2768 858 243 189 54 chr1 232364835 232365123 -10299230 + L2 LINE L2 2589 2837 -476 2291 99 0 0 chr1 232365123 232365426 -10298927 - AluSx SINE Alu -9 303 1 1703 152 13 41 chr1 232365430 232365745 -10298608 - AluJo SINE Alu -6 306 1 858 243 189 54 chr1 232365745 232366081 -10298272 + L2 LINE L2 2839 3311 -2 624 231 113 31 chr1 232366274 232366469 -10297884 + L2 LINE L2 2245 2455 -859 568 280 16 28 chr1 232366472 232366654 -10297699 + L1M3de LINE L1 840 1019 -5634 283 296 61 31 chr1 232366655 232366753 -10297600 + L1M3de LINE L1 915 1015 -5638 294 291 38 0 chr1 232366778 232366857 -10297496 + L1M3de LINE L1 283 364 -6289 257 296 25 25 chr1 232367060 232367141 -10297212 + L1M3de LINE L1 279 359 -6294 2744 270 24 13 chr1 232367156 232367832 -10296521 + L1M3de LINE L1 267 1602 -5051 301 240 13 13 chr1 232367833 232367908 -10296445 + L2 LINE L2 2381 2455 -859 391 308 8 8 chr1 232367914 232368031 -10296322 + L1M3de LINE L1 843 959 -5694 2652 201 69 74 chr1 232368032 232369120 -10295233 + L1M3de LINE L1 1174 2243 -4489 1955 144 0 7 chr1 232369120 232369425 -10294928 + AluSx SINE Alu 1 303 -9 2652 201 69 74 chr1 232369425 232370228 -10294125 + L1M3de LINE L1 2243 3049 -3683 22 0 0 0 chr1 232371234 232371256 -10293097 + AT_rich Low_complexity Low_complexity 1 22 0 1534 182 0 50 chr1 232371257 232371576 -10292777 + AluJo SINE Alu 1 303 -9 1928 100 0 47 chr1 232371578 232371897 -10292456 + AluSx SINE Alu 1 304 -8 365 274 0 19 chr1 232371901 232372007 -10292346 - L1MEc LINE L1 -6254 142 39 266 0 29 0 chr1 232372015 232372049 -10292304 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1918 115 4 0 chr1 232372049 232372328 -10292025 - AluSx SINE Alu -32 280 1 915 135 0 0 chr1 232372331 232372464 -10291889 - AluJo/FLAM SINE Alu -169 133 1 1596 154 10 24 chr1 232372628 232372926 -10291427 + AluJo SINE Alu 5 298 -14 2233 94 7 0 chr1 232373236 232373543 -10290810 - AluSq SINE Alu -4 309 1 895 116 8 0 chr1 232373776 232373897 -10290456 - FLAM_C SINE Alu -11 122 1 1165 254 0 3 chr1 232373903 232374202 -10290151 - L1M4 LINE L1 -1393 4753 4456 2119 147 77 54 chr1 232374213 232374363 -10289990 + LTR47A LTR ERVL 1 146 -306 2209 82 16 10 chr1 232374363 232374669 -10289684 + AluSp SINE Alu 1 308 -5 2119 147 77 54 chr1 232374669 232374875 -10289478 + LTR47A LTR ERVL 146 371 -81 4993 78 38 24 chr1 232374875 232374943 -10289410 - LTR8 LTR ERV1 0 691 625 1921 131 3 3 chr1 232374943 232375234 -10289119 + AluSx SINE Alu 1 291 -21 4993 78 38 24 chr1 232375234 232375846 -10288507 - LTR8 LTR ERV1 -66 625 1 2119 147 77 54 chr1 232375846 232375930 -10288423 + LTR47A LTR ERVL 371 452 0 6540 210 24 43 chr1 232375934 232376374 -10287979 - L1M4 LINE L1 -1701 4445 3998 2257 83 0 7 chr1 232376374 232376676 -10287677 - AluSq SINE Alu -13 300 1 6540 210 24 43 chr1 232376676 232376745 -10287608 - L1M4 LINE L1 -2148 3998 3929 2010 124 3 13 chr1 232376745 232377060 -10287293 - AluSx SINE Alu 0 312 1 6540 210 24 43 chr1 232377060 232377719 -10286634 - L1M4 LINE L1 -2217 3929 3259 2413 69 0 0 chr1 232377719 232378022 -10286331 - AluY SINE Alu -8 303 1 2092 113 0 0 chr1 232378022 232378313 -10286040 - AluSx SINE Alu -21 291 1 6540 210 24 43 chr1 232378313 232379043 -10285310 - L1M4 LINE L1 -2885 3261 2581 386 83 0 17 chr1 232379054 232379114 -10285239 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 1093 150 135 5 chr1 232379114 232379314 -10285039 - AluJo SINE Alu -24 288 63 1584 238 20 0 chr1 232379316 232379716 -10284637 - L1M4 LINE L1 -3603 2543 2136 6229 49 5 12 chr1 232379717 232380514 -10283839 - SVA Other Other 0 1386 596 597 97 53 9 chr1 232380629 232380742 -10283611 + L1MCa LINE L1 2313 2430 -3996 22 35 0 0 chr1 232380921 232380950 -10283403 + GC_rich Low_complexity Low_complexity 1 29 0 2581 82 36 90 chr1 232381001 232381502 -10282851 + SVA Other Other 393 866 -520 525 88 0 48 chr1 232381515 232381640 -10282713 + SVA Other Other 661 779 -607 708 28 28 28 chr1 232381741 232381848 -10282505 + (TCTCCC)n Simple_repeat Simple_repeat 3 109 0 5130 69 28 58 chr1 232381848 232382924 -10281429 + SVA Other Other 72 868 -520 667 52 8 37 chr1 232382941 232383075 -10281278 + SVA Other Other 665 794 -592 6303 44 2 12 chr1 232383103 232383902 -10280451 + SVA Other Other 596 1386 0 730 309 122 8 chr1 232383913 232384006 -10280347 - L1M4 LINE L1 -1106 5040 4959 204 40 0 0 chr1 232384006 232384031 -10280322 + (TG)n Simple_repeat Simple_repeat 2 26 0 730 309 122 8 chr1 232384031 232384642 -10279711 - L1M4 LINE L1 -1187 4959 4256 1563 173 3 49 chr1 232385604 232385911 -10278442 + AluJo SINE Alu 1 293 -9 1569 119 8 34 chr1 232385942 232386157 -10278196 + L1PB1 LINE L1 5888 6096 -55 2363 51 7 0 chr1 232386157 232386450 -10277903 + AluY SINE Alu 1 295 -16 1569 119 8 34 chr1 232386450 232386502 -10277851 + L1PB1 LINE L1 6096 6148 -3 182 287 104 35 chr1 232386585 232386700 -10277653 + L2 LINE L2 2636 2758 -556 184 231 0 0 chr1 232386791 232386830 -10277523 + MIR SINE MIR 66 104 -158 1039 138 0 0 chr1 232386843 232386995 -10277358 - AluSc SINE Alu -24 285 134 315 309 92 53 chr1 232387065 232387217 -10277136 - MLT1K LTR MaLR -385 203 46 692 215 43 6 chr1 232388211 232388374 -10275979 - AluJo/FRAM SINE Alu -10 302 134 1449 162 37 34 chr1 232388374 232388527 -10275826 - AluJb SINE Alu -15 297 141 1828 120 4 7 chr1 232388527 232388825 -10275528 - AluSx SINE Alu 0 312 28 1449 162 37 34 chr1 232388825 232388967 -10275386 - AluJb SINE Alu -171 141 1 2067 134 3 6 chr1 232389266 232389579 -10274774 - AluSx SINE Alu 0 312 1 224 208 0 21 chr1 232391325 232391373 -10272980 + GA-rich Low_complexity Low_complexity 1 47 0 1671 148 41 0 chr1 232393010 232393281 -10271072 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr1 232393284 232393307 -10271046 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 266 285 157 52 chr1 232393432 232393604 -10270749 + L3 LINE CR1 1213 1402 -175 435 300 70 69 chr1 232393889 232393995 -10270358 + L2 LINE L2 2590 2694 -578 1715 127 102 3 chr1 232393995 232394279 -10270074 - AluSx SINE Alu 0 312 1 435 300 70 69 chr1 232394279 232394855 -10269498 + L2 LINE L2 2694 3271 -1 1962 119 0 20 chr1 232395075 232395370 -10268983 - AluSx SINE Alu -23 289 1 1419 157 56 42 chr1 232396451 232396738 -10267615 - AluJo SINE Alu -17 295 5 1779 119 49 7 chr1 232396796 232397082 -10267271 + AluSx SINE Alu 1 298 -14 453 198 86 0 chr1 232397496 232397612 -10266741 + MLT1B-int LTR MaLR 1246 1371 0 983 216 5 5 chr1 232397612 232397806 -10266547 + MLT1B LTR MaLR 1 194 -196 2100 120 0 0 chr1 232397852 232398144 -10266209 - AluSq SINE Alu -21 292 1 21 0 0 0 chr1 232398150 232398171 -10266182 + AT_rich Low_complexity Low_complexity 1 21 0 1472 158 62 11 chr1 232398171 232398443 -10265910 + AluJo SINE Alu 1 286 -26 800 160 0 53 chr1 232398443 232398593 -10265760 - FLAM_C SINE Alu 0 143 2 262 268 226 37 chr1 232398618 232398782 -10265571 + MIR SINE MIR 11 205 -57 2119 101 0 0 chr1 232398841 232399128 -10265225 - AluSx SINE Alu -15 297 11 2457 65 0 0 chr1 232399162 232399469 -10264884 - AluY SINE Alu -4 307 1 1172 149 0 63 chr1 232400471 232400693 -10263660 + AluJb SINE Alu 83 290 -22 2058 104 0 3 chr1 232400698 232400985 -10263368 + AluSx SINE Alu 6 291 -21 293 261 0 0 chr1 232401358 232401423 -10262930 - MIR SINE MIR -60 148 84 1174 95 13 5 chr1 232401597 232401827 -10262526 + (TTTC)n Simple_repeat Simple_repeat 1 411 0 1544 219 27 9 chr1 232402233 232402562 -10261791 - MER7A DNA MER2_type -2 344 12 199 196 54 18 chr1 232402589 232402645 -10261708 + L2 LINE L2 2944 3001 -312 437 295 94 7 chr1 232403543 232403692 -10260661 + MER91B DNA MER1_type 1 162 -28 23 0 0 0 chr1 232404069 232404092 -10260261 + AT_rich Low_complexity Low_complexity 1 23 0 2080 112 0 3 chr1 232404092 232404386 -10259967 - AluSx SINE Alu -19 293 1 909 157 6 79 chr1 232404479 232404624 -10259729 + FRAM SINE Alu 1 132 -170 1852 102 41 48 chr1 232404624 232404938 -10259415 - AluSx SINE Alu 0 312 1 909 157 6 79 chr1 232404938 232404970 -10259383 + FRAM SINE Alu 132 165 -1 2100 104 0 19 chr1 232405428 232405746 -10258607 - AluSx SINE Alu 0 312 1 1963 175 0 3 chr1 232405980 232406328 -10258025 - L1PA16 LINE L1 -14 6152 5806 1620 201 37 90 chr1 232407094 232407412 -10256941 - MLT1C LTR MaLR -2 465 180 2144 100 3 28 chr1 232407412 232407733 -10256620 - AluSq SINE Alu 0 313 1 1620 201 37 90 chr1 232407733 232407902 -10256451 - MLT1C LTR MaLR -287 180 4 327 291 88 44 chr1 232407957 232408276 -10256077 + L2 LINE L2 2827 3159 -113 2027 122 16 0 chr1 232408743 232409046 -10255307 - AluSx SINE Alu -4 308 1 21 36 0 0 chr1 232409161 232409189 -10255164 + AT_rich Low_complexity Low_complexity 1 28 0 1176 84 31 3 chr1 232410535 232410767 -10253586 + AluSq SINE Alu 2 301 -12 616 337 69 20 chr1 232410791 232411097 -10253256 - MLT1K LTR MaLR -112 476 156 2176 95 3 0 chr1 232411323 232411617 -10252736 - AluSq SINE Alu -8 305 11 331 263 92 33 chr1 232412002 232412154 -10252199 + MIR SINE MIR 80 240 -22 1305 159 0 18 chr1 232412773 232413026 -10251327 + AluJb SINE Alu 62 310 0 911 151 44 0 chr1 232413811 232413824 -10250529 - AluSg/x SINE Alu -2 308 297 2553 55 0 0 chr1 232413824 232414133 -10250220 - AluY SINE Alu -2 309 1 911 151 44 0 chr1 232414133 232414278 -10250075 - AluSg/x SINE Alu -13 297 143 2043 121 14 0 chr1 232414135 232414425 -10249928 - AluSx SINE Alu -18 294 1 1354 170 7 51 chr1 232415017 232415311 -10249042 + AluJo SINE Alu 31 311 -1 324 234 137 16 chr1 232415430 232415554 -10248799 - MER5A DNA MER1_type -13 176 38 1817 143 0 26 chr1 232415787 232416095 -10248258 + AluSx SINE Alu 10 309 -3 2085 95 28 0 chr1 232416632 232416916 -10247437 - AluSx SINE Alu -20 292 1 2560 180 37 21 chr1 232416925 232417369 -10246984 - LTR53 LTR ERVL 0 519 64 2082 102 0 23 chr1 232417369 232417674 -10246679 - AluSx SINE Alu -1 311 14 2560 180 37 21 chr1 232417674 232417740 -10246613 - LTR53 LTR ERVL -455 64 1 5847 200 49 10 chr1 232418015 232419158 -10245195 - HERVL74 LTR ERVL -2407 3278 2091 1841 209 12 58 chr1 232419212 232419706 -10244647 - HERVL74 LTR ERVL -1420 2136 1621 2033 141 0 0 chr1 232419706 232420012 -10244341 + AluSx SINE Alu 1 306 -6 1841 209 12 58 chr1 232420012 232420037 -10244316 - HERVL74 LTR ERVL -1935 1621 1675 1696 185 3 10 chr1 232420037 232420345 -10244008 - AluJo SINE Alu -6 306 1 1841 209 12 58 chr1 232420345 232420370 -10243983 - HERVL74 LTR ERVL -1880 1676 1651 885 218 31 5 chr1 232420383 232420576 -10243777 - HERVL74 LTR ERVL -2566 990 793 231 108 185 77 chr1 232420654 232420719 -10243634 + tRNA-Met-i tRNA tRNA 2 73 -2 1781 137 13 13 chr1 232421853 232422160 -10242193 - AluJo SINE Alu -5 307 1 2347 203 64 34 chr1 232422171 232422508 -10241845 - LTR53 LTR ERVL 0 519 161 1293 178 94 45 chr1 232422508 232422768 -10241585 + AluJo SINE Alu 1 278 -24 1691 122 4 4 chr1 232422768 232423022 -10241331 - AluSp SINE Alu -17 296 43 1293 178 94 45 chr1 232423022 232423047 -10241306 + AluJo SINE Alu 278 300 -2 2347 203 64 34 chr1 232423047 232423212 -10241141 - LTR53 LTR ERVL -358 161 2 222 91 0 0 chr1 232423237 232423270 -10241083 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 224 30 30 0 chr1 232423831 232423864 -10240489 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 8100 60 143 30 chr1 232423871 232425101 -10239252 - SVA Other Other -17 1369 1 1042 85 92 0 chr1 232425102 232425255 -10239098 - AluSg/x SINE Alu -11 299 133 183 42 0 0 chr1 232425256 232425280 -10239073 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1925 98 0 28 chr1 232425280 232425567 -10238786 - AluY SINE Alu -32 279 1 1922 125 4 0 chr1 232426718 232427021 -10237332 + AluSg SINE Alu 1 304 0 669 159 18 0 chr1 232427198 232427311 -10237042 + FLAM_A SINE Alu 16 130 -12 2824 6 0 0 chr1 232427522 232427835 -10236518 + AluYb8 SINE Alu 1 313 -5 984 173 209 8 chr1 232428041 232428290 -10236063 + AluSg SINE Alu 1 299 -11 22 35 0 0 chr1 232428344 232428373 -10235980 + AT_rich Low_complexity Low_complexity 1 29 0 1694 116 0 0 chr1 232428494 232428726 -10235627 + AluSq SINE Alu 10 241 -72 647 164 36 0 chr1 232428729 232428839 -10235514 + AluJb SINE Alu 198 311 -1 768 181 0 31 chr1 232428860 232429020 -10235333 + L1MC3 LINE L1 7630 7784 -1 691 145 0 61 chr1 232429159 232429290 -10235063 + AluJo/FLAM SINE Alu 3 125 -177 1348 129 5 0 chr1 232429292 232429493 -10234860 - AluSq SINE Alu -111 202 1 299 273 91 0 chr1 232429493 232429581 -10234772 - MIR SINE MIR -67 195 100 1250 127 0 0 chr1 232429592 232429781 -10234572 + AluSg/x SINE Alu 121 309 -1 1428 136 41 0 chr1 232430019 232430118 -10234235 - MER30 DNA MER1_type 0 230 136 2050 128 0 7 chr1 232430118 232430422 -10233931 - AluSx SINE Alu -10 302 1 1428 136 41 0 chr1 232430422 232430543 -10233810 - MER30 DNA MER1_type -94 136 1 308 310 86 27 chr1 232430969 232431156 -10233197 - L2 LINE L2 -1077 2237 2040 448 244 128 44 chr1 232431178 232431358 -10232995 + L2 LINE L2 3118 3312 -1 1850 128 6 60 chr1 232431904 232432039 -10232314 + AluJb SINE Alu 1 142 -170 1993 121 3 16 chr1 232432039 232432344 -10232009 - AluSx SINE Alu -11 301 1 1850 128 6 60 chr1 232432344 232432527 -10231826 + AluJb SINE Alu 142 302 -10 1821 156 18 128 chr1 232433500 232433623 -10230730 - MLT1B LTR MaLR -1 389 254 1643 112 27 27 chr1 232433623 232433883 -10230470 - AluSx SINE Alu -5 307 48 1821 156 18 128 chr1 232433883 232434196 -10230157 - MLT1B LTR MaLR -136 254 1 6872 161 16 22 chr1 232434551 232436404 -10227949 - L1MC1 LINE L1 -1 6332 4500 4451 133 55 29 chr1 232436407 232437157 -10227196 + Tigger1 DNA MER2_type 3 771 -1647 26 0 0 0 chr1 232437157 232437183 -10227170 + AT_rich Low_complexity Low_complexity 1 26 0 332 247 37 12 chr1 232437184 232437265 -10227088 - L1MCa LINE L1 -4361 2065 1983 236 56 0 56 chr1 232437295 232437331 -10227022 - Tigger1 DNA MER2_type -1391 1027 994 221 80 93 0 chr1 232437343 232437418 -10226935 + (TA)n Simple_repeat Simple_repeat 1 82 0 1989 112 3 24 chr1 232437418 232437712 -10226641 - AluSx SINE Alu -24 288 1 4369 103 6 72 chr1 232437713 232438000 -10226353 + Tigger1 DNA MER2_type 751 1055 -1363 2039 136 0 0 chr1 232438000 232438308 -10226045 - AluSx SINE Alu -4 308 1 4369 103 6 72 chr1 232438308 232438737 -10225616 + Tigger1 DNA MER2_type 1055 1419 -999 2615 145 39 2 chr1 232438737 232439150 -10225203 + MSTC LTR MaLR 1 428 0 5762 114 34 48 chr1 232439150 232440121 -10224232 + Tigger1 DNA MER2_type 1417 2373 -45 28 0 0 0 chr1 232440128 232440156 -10224197 + AT_rich Low_complexity Low_complexity 1 28 0 408 238 107 8 chr1 232440162 232440284 -10224069 - MIR SINE MIR -57 205 72 2182 89 0 7 chr1 232440313 232440606 -10223747 - AluSq SINE Alu -22 291 1 260 179 0 0 chr1 232440719 232440758 -10223595 + Tigger1 DNA MER2_type 2380 2418 0 817 259 73 26 chr1 232440766 232441106 -10223247 - L1MC1 LINE L1 -1662 4484 4129 2264 98 0 0 chr1 232441114 232441410 -10222943 - AluSx SINE Alu -16 296 1 228 270 44 107 chr1 232442141 232442193 -10222160 - MER112 DNA MER1_type -1 259 205 1853 103 0 8 chr1 232442193 232442454 -10221899 + AluSg SINE Alu 42 300 -10 228 270 44 107 chr1 232442454 232442671 -10221682 - MER112 DNA MER1_type -55 205 7 192 283 0 38 chr1 232442674 232442727 -10221626 + L2 LINE L2 3144 3194 -78 281 284 57 0 chr1 232442803 232442891 -10221462 - L2 LINE L2 -38 3234 3142 697 131 7 33 chr1 232442975 232443128 -10221225 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 1332 142 18 0 chr1 232443130 232443356 -10220997 - AluSg/x SINE Alu 0 310 81 525 277 16 82 chr1 232443668 232443713 -10220640 - MER5B DNA MER1_type 0 178 132 2252 86 10 0 chr1 232443713 232444017 -10220336 - AluSp SINE Alu -6 307 1 525 277 16 82 chr1 232444017 232444155 -10220198 - MER5B DNA MER1_type -46 132 7 252 219 31 10 chr1 232444442 232444538 -10219815 + L1M4 LINE L1 4404 4501 -1645 292 298 95 0 chr1 232444665 232444749 -10219604 - MIR3 SINE MIR -6 202 111 2544 163 50 7 chr1 232444796 232445239 -10219114 - MLT1C LTR MaLR -5 462 1 2253 91 0 0 chr1 232445701 232445998 -10218355 + AluSx SINE Alu 1 297 -15 649 207 65 47 chr1 232446033 232446202 -10218151 + FRAM SINE Alu 1 172 -4 337 291 109 0 chr1 232446221 232446331 -10218022 - L1ME4a LINE L1 -148 5973 5852 421 269 99 60 chr1 232446362 232446436 -10217917 - MIR SINE MIR -3 259 189 2158 108 0 0 chr1 232446436 232446731 -10217622 - AluSx SINE Alu -17 295 1 421 269 99 60 chr1 232446731 232446897 -10217456 - MIR SINE MIR -73 189 8 338 259 89 15 chr1 232447070 232447205 -10217148 + MIR SINE MIR 25 169 -93 234 200 0 0 chr1 232447200 232447240 -10217113 + L2 LINE L2 3267 3306 -7 * 2030 143 0 0 chr1 232447304 232447605 -10216748 - AluSx SINE Alu -11 301 1 1931 149 54 35 chr1 232448202 232448570 -10215783 + THE1C LTR MaLR 1 375 0 1947 151 50 18 chr1 232449081 232449150 -10215203 + MER7A DNA MER2_type 1 66 -2972 1968 140 7 3 chr1 232449150 232449458 -10214895 - AluSg SINE Alu -1 309 1 1947 151 50 18 chr1 232449458 232449725 -10214628 + MER7A DNA MER2_type 66 346 0 2277 93 0 10 chr1 232449917 232450230 -10214123 - AluY SINE Alu -1 310 1 342 270 0 14 chr1 232450494 232450568 -10213785 - MIR3 SINE MIR -18 190 118 2253 92 0 0 chr1 232450812 232451106 -10213247 + AluSg SINE Alu 1 294 -16 2194 86 0 0 chr1 232451678 232451969 -10212384 - AluY SINE Alu -18 293 3 559 135 45 0 chr1 232451976 232452065 -10212288 - AluSg/x SINE Alu -20 292 200 209 204 37 37 chr1 232452568 232452622 -10211731 + CT-rich Low_complexity Low_complexity 3 56 0 1726 152 3 10 chr1 232453119 232453422 -10210931 + AluJb SINE Alu 3 303 -9 2140 98 0 16 chr1 232453422 232453727 -10210626 + AluSg SINE Alu 1 300 -10 432 305 151 10 chr1 232453961 232454292 -10210061 + L1MC4a LINE L1 5520 5822 -342 2083 122 6 0 chr1 232454514 232454825 -10209528 - AluSq SINE Alu 0 313 1 2035 99 7 3 chr1 232455495 232455778 -10208575 - AluSq SINE Alu -10 303 20 213 312 82 100 chr1 232455818 232456049 -10208304 + L2 LINE L2 3046 3272 0 1685 166 13 19 chr1 232456056 232456369 -10207984 - AluJo SINE Alu -1 311 1 2156 103 3 0 chr1 232456703 232457004 -10207349 - AluSx SINE Alu -10 302 1 1766 158 30 6 chr1 232457138 232457467 -10206886 - L1 LINE L1 -1096 5050 4714 1649 193 58 45 chr1 232457813 232458352 -10206001 - LTR54B LTR ERV1 0 510 2 218 291 23 23 chr1 232458741 232458827 -10205526 + MER5B DNA MER1_type 5 90 -88 1200 118 0 100 chr1 232459150 232459208 -10205145 - L1MB3 LINE L1 -1 6182 6120 1878 91 11 0 chr1 232459208 232459473 -10204880 - AluSx SINE Alu -44 268 1 1200 118 0 100 chr1 232459473 232459643 -10204710 - L1MB3 LINE L1 -63 6120 5977 294 340 54 20 chr1 232459819 232459966 -10204387 - L2 LINE L2 -165 3107 2956 925 157 13 0 chr1 232460136 232460289 -10204064 - FRAM SINE Alu -16 160 6 2197 110 0 0 chr1 232460306 232460615 -10203738 - AluSx SINE Alu -3 309 1 254 150 0 17 chr1 232462258 232462318 -10202035 + (TC)n Simple_repeat Simple_repeat 2 60 0 240 59 0 0 chr1 232462323 232462357 -10201996 + (CA)n Simple_repeat Simple_repeat 2 35 0 2269 82 7 0 chr1 232462670 232462975 -10201378 + AluY SINE Alu 2 308 -3 183 266 0 47 chr1 232463042 232463106 -10201247 - MIR3 SINE MIR -32 176 116 396 59 0 0 chr1 232463297 232463348 -10201005 + (CA)n Simple_repeat Simple_repeat 1 51 0 866 198 32 0 chr1 232463647 232463804 -10200549 - AluJo/FRAM SINE Alu -4 298 137 702 203 0 23 chr1 232463682 232463815 -10200538 - FRAM SINE Alu -54 122 1 469 234 73 24 chr1 232463827 232463951 -10200402 - L2 LINE L2 0 3313 3184 2192 74 14 0 chr1 232464224 232464508 -10199845 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr1 232464508 232464533 -10199820 + AT_rich Low_complexity Low_complexity 1 25 0 2018 125 3 0 chr1 232465074 232465362 -10198991 + AluSx SINE Alu 1 289 -23 207 0 0 0 chr1 232465371 232465394 -10198959 + (TAA)n Simple_repeat Simple_repeat 2 24 0 267 197 13 79 chr1 232465597 232465673 -10198680 + L1ME4a LINE L1 5979 6049 -72 406 35 0 35 chr1 232465680 232465737 -10198616 - AluSp/q SINE Alu -7 296 242 1154 51 0 0 chr1 232465737 232465874 -10198479 - AluSx SINE Alu -157 155 19 652 146 10 0 chr1 232465874 232465977 -10198376 - AluJo/FLAM SINE Alu -206 106 3 22 56 0 0 chr1 232466235 232466271 -10198082 + AT_rich Low_complexity Low_complexity 1 36 0 2113 116 3 10 chr1 232466478 232466788 -10197565 - AluSq SINE Alu -3 310 3 938 118 0 0 chr1 232466789 232466925 -10197428 - AluSq/x SINE Alu -176 136 1 653 210 10 118 chr1 232468206 232468401 -10195952 + MER5B DNA MER1_type 5 178 0 789 111 0 0 chr1 232468416 232468524 -10195829 - AluSg/x SINE Alu -17 293 186 472 232 110 19 chr1 232468570 232468725 -10195628 - MIR SINE MIR -15 247 79 761 266 171 25 chr1 232468931 232469334 -10195019 - L2 LINE L2 0 3313 2852 1732 152 0 24 chr1 232469378 232469675 -10194678 + AluJb SINE Alu 1 290 -22 701 176 17 0 chr1 232469700 232469819 -10194534 - AluJb SINE Alu -59 253 133 281 323 102 0 chr1 232469884 232470011 -10194342 - MIR SINE MIR -70 192 53 2143 98 0 7 chr1 232470733 232471065 -10193288 + AluSq SINE Alu 1 313 0 1989 123 7 3 chr1 232471365 232471665 -10192688 + AluSq SINE Alu 1 301 -12 1911 119 0 7 chr1 232471791 232472115 -10192238 + AluSq SINE Alu 1 322 0 1565 122 34 61 chr1 232472287 232472409 -10191944 + AluJo SINE Alu 1 125 -187 2186 101 3 0 chr1 232472409 232472707 -10191646 - AluSp SINE Alu -14 299 1 1565 122 34 61 chr1 232472707 232472879 -10191474 + AluJo SINE Alu 125 287 -25 336 228 35 48 chr1 232472893 232473038 -10191315 - L1ME4a LINE L1 -18 6103 5961 1461 94 0 0 chr1 232473116 232473308 -10191045 + AluY SINE Alu 1 192 -119 2062 129 10 0 chr1 232473703 232474013 -10190340 + AluSq SINE Alu 1 313 0 236 284 21 53 chr1 232474021 232474116 -10190237 + L1ME LINE L1 5545 5636 -485 249 33 0 0 chr1 232474242 232474272 -10190081 + (TG)n Simple_repeat Simple_repeat 1 30 0 405 219 24 12 chr1 232474290 232474372 -10189981 + L1MC4 LINE L1 6613 6695 -1347 2643 70 8 39 chr1 232474372 232474464 -10189889 + L1PB1 LINE L1 5781 5874 -277 2284 79 0 0 chr1 232474464 232474767 -10189586 - AluY SINE Alu -7 304 2 2643 70 8 39 chr1 232474767 232475057 -10189296 + L1PB1 LINE L1 5874 6151 0 1797 169 3 0 chr1 232475096 232475397 -10188956 + AluJb SINE Alu 1 302 -10 1554 196 14 7 chr1 232475646 232475942 -10188411 + AluJo SINE Alu 1 298 -14 360 0 0 0 chr1 232475979 232476019 -10188334 + (TA)n Simple_repeat Simple_repeat 2 41 0 627 234 129 35 chr1 232476072 232476358 -10187995 - L1ME4a LINE L1 -218 5903 5591 1869 132 0 50 chr1 232477363 232477682 -10186671 + AluJb SINE Alu 1 303 -9 2381 68 0 7 chr1 232477714 232478022 -10186331 + AluY SINE Alu 1 306 -5 607 101 0 0 chr1 232480524 232480613 -10183740 + AluSc SINE Alu 215 303 -6 2262 60 0 0 chr1 232481122 232481403 -10182950 + AluY SINE Alu 17 297 -14 2178 102 0 0 chr1 232481461 232481754 -10182599 + AluSx SINE Alu 1 293 -19 2112 98 3 0 chr1 232483309 232483605 -10180748 + AluSg1 SINE Alu 1 297 -12 25 65 0 0 chr1 232483790 232483836 -10180517 + AT_rich Low_complexity Low_complexity 1 46 0 1839 121 42 7 chr1 232484347 232484636 -10179717 + AluSx SINE Alu 1 299 -13 1744 161 7 13 chr1 232485134 232485444 -10178909 - AluJo SINE Alu -4 308 1 790 153 0 29 chr1 232485475 232485612 -10178741 + AluJb SINE Alu 2 134 -178 2120 88 6 31 chr1 232486065 232486382 -10177971 + AluSg SINE Alu 1 309 -1 1941 121 28 0 chr1 232487124 232487413 -10176940 - AluSx SINE Alu -15 297 1 1369 167 13 59 chr1 232488506 232488812 -10175541 + AluJb SINE Alu 6 297 -15 602 286 215 9 chr1 232488867 232489206 -10175147 + L2 LINE L2 2231 2639 -675 244 176 0 59 chr1 232489264 232489332 -10175021 + L1MC4 LINE L1 6640 6703 -1339 311 299 0 23 chr1 232489333 232489420 -10174933 + L1MC4 LINE L1 6619 6703 -1339 214 280 0 0 chr1 232489423 232489473 -10174880 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 463 213 0 53 chr1 232489474 232489662 -10174691 + (TATG)n Simple_repeat Simple_repeat 2 179 0 1969 94 0 0 chr1 232489671 232489927 -10174426 - AluSx SINE Alu -56 256 1 301 327 78 75 chr1 232490003 232490440 -10173913 + L2 LINE L2 2835 3272 0 447 228 0 9 chr1 232490644 232490758 -10173595 + L1MB5 LINE L1 6050 6162 -12 1165 187 24 0 chr1 232490839 232491048 -10173305 + AluJo SINE Alu 87 300 -12 471 78 0 0 chr1 232491048 232491112 -10173241 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 234 197 0 45 chr1 232491389 232491482 -10172871 + (CACCC)n Simple_repeat Simple_repeat 1 88 0 211 367 53 40 chr1 232491673 232491789 -10172564 + L2 LINE L2 1683 1803 -1511 2144 99 14 0 chr1 232491789 232492081 -10172272 + AluSx SINE Alu 1 296 -16 211 367 53 40 chr1 232492081 232492114 -10172239 + L2 LINE L2 1803 1834 -1480 1959 116 43 13 chr1 232492943 232493246 -10171107 - AluSx SINE Alu 0 312 1 834 161 68 19 chr1 232493283 232493445 -10170908 + FAM SINE Alu 6 175 -10 1746 155 7 26 chr1 232493447 232493757 -10170596 + AluJo SINE Alu 1 304 -8 1768 152 30 0 chr1 232493816 232494118 -10170235 - AluJo SINE Alu -1 311 1 1533 181 0 36 chr1 232494220 232494524 -10169829 + AluJo SINE Alu 5 297 -15 2105 112 3 0 chr1 232495304 232495598 -10168755 + AluSx SINE Alu 1 295 -17 1901 162 0 3 chr1 232495682 232495990 -10168363 + AluSx SINE Alu 1 307 -5 1326 136 174 30 chr1 232496106 232496393 -10167960 + AluJb SINE Alu 1 325 0 1998 134 7 0 chr1 232496561 232496852 -10167501 + AluSx SINE Alu 1 293 -19 2671 126 13 0 chr1 232496853 232497249 -10167104 + MER57A LTR ERV1 1 401 -2 2330 84 0 0 chr1 232497261 232497559 -10166794 + AluSx SINE Alu 1 298 -14 1701 163 7 17 chr1 232497907 232498208 -10166145 + AluJb SINE Alu 1 298 -14 765 272 35 0 chr1 232498434 232498607 -10165746 - MIR SINE MIR -46 216 38 349 268 76 27 chr1 232498736 232498886 -10165467 + L1MCa LINE L1 1167 2378 -4048 251 231 0 13 chr1 232498894 232498972 -10165381 + GA-rich Low_complexity Low_complexity 1 77 0 240 59 0 0 chr1 232499585 232499619 -10164734 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 659 73 0 0 chr1 232499651 232499733 -10164620 - AluSp SINE Alu -210 103 22 2075 104 0 3 chr1 232499764 232500052 -10164301 + AluSq SINE Alu 1 287 -26 252 0 0 0 chr1 232500059 232500087 -10164266 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 3308 198 15 73 chr1 232500380 232501409 -10162944 + LTR5 LTR ERVK 1 969 0 841 115 103 55 chr1 232501508 232501673 -10162680 + AluJb SINE Alu 137 309 -3 25 0 0 0 chr1 232501693 232501718 -10162635 + AT_rich Low_complexity Low_complexity 1 25 0 2180 96 0 0 chr1 232501718 232502010 -10162343 - AluSg SINE Alu -18 292 1 1777 137 23 7 chr1 232502346 232502646 -10161707 + AluJo SINE Alu 2 306 -6 2317 78 3 0 chr1 232502763 232503059 -10161294 + AluSc SINE Alu 1 297 -12 1212 141 8 50 chr1 232503747 232503988 -10160365 - AluJo SINE Alu -1 311 81 2331 48 7 7 chr1 232503988 232504281 -10160072 - AluY SINE Alu -18 293 1 3783 135 7 8 chr1 232504597 232505203 -10159150 - L1P LINE L1 -3194 2952 2348 759 296 38 61 chr1 232505654 232506182 -10158171 - MER34 LTR ERV1 -26 516 1 2032 108 0 35 chr1 232506576 232506890 -10157463 - AluSx SINE Alu -9 303 1 1849 139 4 0 chr1 232507395 232507676 -10156677 + AluSx SINE Alu 1 282 -30 1044 152 12 0 chr1 232507988 232508159 -10156194 - AluJ SINE Alu -3 309 137 212 0 36 0 chr1 232508159 232508187 -10156166 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 1959 110 16 19 chr1 232508202 232508512 -10155841 - AluSc SINE Alu 0 309 1 497 270 59 7 chr1 232508850 232509002 -10155351 - L2 LINE L2 0 3272 3113 220 303 79 0 chr1 232509176 232509252 -10155101 - MIR SINE MIR -59 203 122 549 236 165 47 chr1 232509271 232509483 -10154870 + Charlie2 DNA MER1_type 1 237 -2625 210 224 15 30 chr1 232509489 232509556 -10154797 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 355 190 10 120 chr1 232509556 232509656 -10154697 + L1MC4 LINE L1 6614 6702 -1340 340 299 35 0 chr1 232509649 232509736 -10154617 - L1MC4 LINE L1 -1339 6703 6614 * 313 247 11 45 chr1 232509742 232509831 -10154522 + L1MC4 LINE L1 6618 6703 -1339 1551 154 36 4 chr1 232509832 232510111 -10154242 - AluJo SINE Alu -24 288 1 885 180 43 113 chr1 232510232 232510699 -10153654 + Charlie2 DNA MER1_type 2239 2672 -190 864 162 0 0 chr1 232510699 232510835 -10153518 - AluJ SINE Alu -176 136 1 582 202 101 0 chr1 232510835 232511013 -10153340 + Charlie2 DNA MER1_type 2660 2855 -7 308 349 87 6 chr1 232511378 232511550 -10152803 - MER91A DNA MER1_type -10 186 1 312 206 31 31 chr1 232511953 232512050 -10152303 + L1MC5 LINE L1 5583 5679 -2129 1746 174 7 0 chr1 232512093 232512463 -10151890 + AluJb SINE Alu 1 372 0 525 195 31 44 chr1 232512465 232512648 -10151705 + L1MC5 LINE L1 6985 7233 -634 658 216 53 18 chr1 232512843 232513014 -10151339 + L1MC5 LINE L1 7727 7903 -58 722 92 9 0 chr1 232513033 232513142 -10151211 - LTR9B LTR ERV1 -84 560 451 21 0 0 0 chr1 232513216 232513237 -10151116 + AT_rich Low_complexity Low_complexity 1 21 0 2247 88 13 0 chr1 232513546 232513852 -10150501 - AluSg SINE Alu 0 310 1 1939 163 0 7 chr1 232514991 232515286 -10149067 + AluJo SINE Alu 3 295 -17 217 157 39 0 chr1 232515489 232515540 -10148813 + L2 LINE L2 1615 1667 -1647 323 246 31 4 chr1 232515544 232515699 -10148654 + MER63 DNA MER1_type 1 1686 -2 569 252 120 34 chr1 232515700 232515831 -10148522 - MER112 DNA MER1_type 0 256 138 2340 117 0 0 chr1 232515831 232516139 -10148214 - AluSx SINE Alu -4 308 1 569 252 120 34 chr1 232516139 232516241 -10148112 - MER112 DNA MER1_type -118 138 3 385 279 264 9 chr1 232516284 232516610 -10147743 + L2 LINE L2 1698 2106 -1208 446 276 65 53 chr1 232516658 232516904 -10147449 + L2 LINE L2 2831 3079 -234 790 280 120 44 chr1 232516977 232517429 -10146924 - L2 LINE L2 -78 3235 2728 1936 124 17 24 chr1 232517429 232517727 -10146626 + AluSx SINE Alu 1 296 -16 790 280 120 44 chr1 232517727 232517870 -10146483 - L2 LINE L2 -585 2728 2597 191 189 27 0 chr1 232517928 232517965 -10146388 + L2 LINE L2 3264 3301 -12 1154 165 19 29 chr1 232518204 232518410 -10145943 + AluJo SINE Alu 1 204 -108 214 186 350 0 chr1 232521117 232521214 -10143139 - MIR SINE MIR 0 262 132 23 24 0 24 chr1 232521274 232521288 -10143065 + AT_rich Low_complexity Low_complexity 1 14 -26 2341 101 0 3 chr1 232521288 232521585 -10142768 - AluSx SINE Alu -16 296 1 23 24 0 24 chr1 232521585 232521611 -10142742 + AT_rich Low_complexity Low_complexity 14 40 0 27 0 0 0 chr1 232521762 232521789 -10142564 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr1 232523002 232523022 -10141331 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2022 142 0 10 chr1 232523614 232523917 -10140436 - AluSx SINE Alu -12 300 1 2362 79 0 3 chr1 232523982 232524274 -10140079 + AluSg SINE Alu 1 291 -19 1562 148 126 11 chr1 232524427 232524698 -10139655 - AluJo SINE Alu -10 302 1 1679 187 3 7 chr1 232524871 232525171 -10139182 + AluJb SINE Alu 1 299 -13 2280 112 0 0 chr1 232525179 232525482 -10138871 + AluSx SINE Alu 3 305 -7 2203 104 3 22 chr1 232525512 232525830 -10138523 - AluSx SINE Alu 0 312 1 190 217 33 50 chr1 232526484 232526544 -10137809 + L2 LINE L2 2345 2403 -911 544 306 143 0 chr1 232526906 232527171 -10137182 - L1MC4a LINE L1 -1899 5909 5607 2443 49 0 7 chr1 232527177 232527502 -10136851 - AluY SINE Alu 0 323 1 2734 172 67 8 chr1 232527663 232528187 -10136166 - MER68 LTR ERV1 -7 555 1 182 170 38 38 chr1 232528395 232528435 -10135918 + L2 LINE L2 2350 2392 -922 2481 78 0 7 chr1 232528435 232528742 -10135611 + AluSq SINE Alu 1 305 -8 182 170 38 38 chr1 232528742 232528754 -10135599 + L2 LINE L2 2391 2402 -912 2227 101 10 0 chr1 232529208 232529504 -10134849 - AluSp SINE Alu -14 299 1 865 222 64 5 chr1 232529528 232529731 -10134622 - LTR67 LTR ERVL 0 557 343 24 32 0 0 chr1 232530320 232530351 -10134002 + AT_rich Low_complexity Low_complexity 1 31 0 1864 104 52 7 chr1 232530683 232530953 -10133400 + AluSx SINE Alu 25 306 -6 306 216 120 50 chr1 232531024 232531178 -10133175 - L1ME4a LINE L1 -3 6118 5976 423 138 12 0 chr1 232531178 232531258 -10133095 - L1MA3 LINE L1 0 6305 6225 306 216 120 50 chr1 232531258 232531386 -10132967 - L1ME4a LINE L1 -145 5976 5816 229 129 0 0 chr1 232531667 232531698 -10132655 + L1PA15-16 LINE L1 1396 1426 -5423 278 294 206 20 chr1 232531789 232531993 -10132360 - L2 LINE L2 -1 3271 3030 2556 41 3 0 chr1 232532890 232533183 -10131170 - AluY SINE Alu -17 294 1 1574 164 60 27 chr1 232533684 232533982 -10130371 + AluJo SINE Alu 1 308 -4 579 301 17 86 chr1 232534184 232534593 -10129760 - MLT1J LTR MaLR -94 417 37 313 203 72 0 chr1 232535129 232535198 -10129155 - Charlie8 DNA MER1_type -2198 219 146 184 306 28 37 chr1 232535724 232535832 -10128521 + L2 LINE L2 3167 3273 -40 464 284 114 24 chr1 232536828 232536880 -10127473 - L1ME4a LINE L1 -2148 5660 5614 1827 186 9 14 chr1 232536880 232537230 -10127123 + MER7A DNA MER2_type 1 346 0 464 284 114 24 chr1 232537230 232537388 -10126965 - L1ME4a LINE L1 -2194 5614 5431 27 62 0 0 chr1 232537433 232537481 -10126872 + AT_rich Low_complexity Low_complexity 1 48 0 1625 158 22 11 chr1 232538079 232538357 -10125996 + AluJo SINE Alu 9 289 -23 193 311 33 0 chr1 232539237 232539327 -10125026 - L2 LINE L2 -25 3247 3155 2037 108 13 33 chr1 232539814 232540119 -10124234 - AluSx SINE Alu -13 299 1 243 290 104 16 chr1 232541932 232542115 -10122238 - HAL1b LINE L1 -5 1343 1145 201 125 0 0 chr1 232544294 232544326 -10120027 - L2 LINE L2 -7 3306 3275 25 31 0 0 chr1 232546860 232546892 -10117461 + AT_rich Low_complexity Low_complexity 1 32 0 300 240 74 53 chr1 232547293 232547434 -10116919 + MIR SINE MIR 59 213 -49 26 0 0 0 chr1 232549947 232549973 -10114380 + AT_rich Low_complexity Low_complexity 1 26 0 2242 114 0 0 chr1 232549978 232550277 -10114076 + AluSx SINE Alu 1 299 -13 395 278 149 21 chr1 232553438 232553632 -10110721 - MIR SINE MIR -12 250 32 956 156 6 18 chr1 232553804 232553971 -10110382 - FRAM SINE Alu -11 165 1 253 283 130 33 chr1 232555097 232555281 -10109072 - MIR SINE MIR -36 226 25 287 130 19 0 chr1 232556081 232556135 -10108218 + (CA)n Simple_repeat Simple_repeat 1 55 0 281 208 52 13 chr1 232556583 232556660 -10107693 + L1MC4 LINE L1 6983 7062 -980 1107 261 108 12 chr1 232556670 232557069 -10107284 + L1MC4 LINE L1 7606 8042 0 440 287 71 32 chr1 232557616 232557926 -10106427 - L1ME3A LINE L1 -303 5867 5546 226 132 132 19 chr1 232558048 232558101 -10106252 - L1ME3A LINE L1 -987 5372 5314 280 303 117 36 chr1 232558178 232558485 -10105868 - L1ME3A LINE L1 -1053 5093 4762 353 324 25 34 chr1 232558552 232558790 -10105563 - L1ME3A LINE L1 -1559 4587 4352 284 283 62 118 chr1 232558982 232559139 -10105214 - L1ME3A LINE L1 -2032 4114 3983 2218 65 34 14 chr1 232559139 232559430 -10104923 - AluY SINE Alu 0 311 15 284 283 62 118 chr1 232559430 232559594 -10104759 - L1ME3A LINE L1 -2163 3983 3811 1876 157 3 10 chr1 232559705 232560005 -10104348 + AluJo SINE Alu 1 298 -14 478 313 23 47 chr1 232560013 232560227 -10104126 - L1ME LINE L1 -398 5772 5564 673 198 25 0 chr1 232561204 232561325 -10103028 - FLAM_A SINE Alu -9 124 1 279 214 87 95 chr1 232562276 232562402 -10101951 + MARNA DNA Mariner 319 443 -143 1411 183 45 14 chr1 232562860 232563150 -10101203 - AluJo SINE Alu -13 299 1 203 295 86 38 chr1 232563178 232563283 -10101070 - L2 LINE L2 -11 3302 3193 2182 111 7 0 chr1 232563301 232563598 -10100755 + AluSq SINE Alu 1 299 -14 216 86 0 0 chr1 232564758 232564793 -10099560 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 232564816 232564837 -10099516 + AT_rich Low_complexity Low_complexity 1 21 0 1220 176 0 63 chr1 232565049 232565288 -10099065 - AluJo SINE Alu -21 291 68 3479 131 0 33 chr1 232565345 232565454 -10098899 + L1MB7 LINE L1 5273 5386 -798 3479 147 36 40 chr1 232565454 232565879 -10098474 + L1MB7 LINE L1 5430 5855 -329 2353 57 0 3 chr1 232565879 232566185 -10098168 + AluY SINE Alu 1 305 0 3479 147 36 40 chr1 232566185 232566311 -10098042 + L1MB7 LINE L1 5855 5980 -204 267 114 0 0 chr1 232566311 232566355 -10097998 + (TGG)n Simple_repeat Simple_repeat 2 45 0 3479 147 36 40 chr1 232566355 232566543 -10097810 + L1MB7 LINE L1 5980 6168 -16 3479 131 0 33 chr1 232566543 232566558 -10097795 + L1MB7 LINE L1 5386 6168 -16 424 352 47 0 chr1 232566934 232567127 -10097226 - MIR SINE MIR -32 230 29 313 257 9 18 chr1 232567876 232567989 -10096364 + (TA)n Simple_repeat Simple_repeat 2 113 0 482 261 107 26 chr1 232569310 232569607 -10094746 + L1MC5 LINE L1 7555 8001 -41 21 71 0 0 chr1 232569881 232569923 -10094430 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 232570431 232570460 -10093893 + AT_rich Low_complexity Low_complexity 1 29 0 1127 208 19 14 chr1 232571187 232571403 -10092950 + MER58A DNA MER1_type 2 218 -6 309 227 94 86 chr1 232573012 232573065 -10091288 - L1MC4a LINE L1 -1883 5925 5874 1768 92 4 17 chr1 232573065 232573303 -10091050 - AluSx SINE Alu -57 255 21 309 227 94 86 chr1 232573303 232573359 -10090994 - L1MC4a LINE L1 -1934 5874 5820 2451 76 3 0 chr1 232573359 232573660 -10090693 - AluSp SINE Alu -11 302 1 309 227 94 86 chr1 232573660 232573805 -10090548 - L1MC4a LINE L1 -1988 5820 5668 342 306 97 16 chr1 232574373 232574683 -10089670 - L1 LINE L1 -2203 3943 3609 1357 154 97 4 chr1 232574964 232575211 -10089142 + Tigger4(Zombi) DNA MER2_type 1 270 -2461 259 237 133 30 chr1 232575380 232575515 -10088838 + L1MC4a LINE L1 5760 5908 -1900 201 158 0 0 chr1 232575801 232575839 -10088514 + A-rich Low_complexity Low_complexity 2 39 0 2068 145 0 0 chr1 232576392 232576689 -10087664 - AluJb SINE Alu -15 297 1 2327 90 0 0 chr1 232576697 232576987 -10087366 - AluSc SINE Alu -16 293 4 482 255 6 38 chr1 232577514 232577671 -10086682 - L2 LINE L2 -1268 2046 1895 2366 78 0 7 chr1 232577970 232578278 -10086075 - AluY SINE Alu -5 306 1 2088 95 4 4 chr1 232578282 232578555 -10085798 - AluSq SINE Alu -20 293 21 2270 115 0 0 chr1 232579353 232579658 -10084695 - AluSx SINE Alu -7 305 1 24 0 0 0 chr1 232582504 232582528 -10081825 + AT_rich Low_complexity Low_complexity 1 24 0 301 103 0 0 chr1 232582532 232582571 -10081782 - AluSq SINE Alu -263 39 1 23 0 0 0 chr1 232582605 232582628 -10081725 + AT_rich Low_complexity Low_complexity 1 23 0 805 228 44 24 chr1 232584225 232584431 -10079922 + MIR SINE MIR 26 235 -27 763 186 0 8 chr1 232584701 232584825 -10079528 + FLAM_A SINE Alu 1 123 -10 250 236 8 89 chr1 232585751 232585874 -10078479 - MER113 DNA MER1_type? -407 114 2 1507 160 49 38 chr1 232586110 232586398 -10077955 - AluJb SINE Alu -21 291 1 271 256 197 0 chr1 232588537 232588654 -10075699 - MIR SINE MIR -1 261 122 560 190 0 69 chr1 232588657 232588773 -10075580 + FLAM_C SINE Alu 1 108 -35 2293 100 3 0 chr1 232588792 232589092 -10075261 + AluSq SINE Alu 9 309 -4 192 263 0 118 chr1 232589166 232589242 -10075111 - MIR SINE MIR -193 69 3 210 71 0 0 chr1 232589451 232589479 -10074874 + (A)n Simple_repeat Simple_repeat 1 28 0 1302 177 145 8 chr1 232590682 232590931 -10073422 - AluJo SINE Alu -25 287 5 22 35 0 0 chr1 232591634 232591663 -10072690 + AT_rich Low_complexity Low_complexity 1 29 0 690 134 0 50 chr1 232592891 232593010 -10071343 + FRAM SINE Alu 48 160 -16 24 0 0 29 chr1 232593109 232593128 -10071225 + AT_rich Low_complexity Low_complexity 1 20 -14 2261 98 14 0 chr1 232593128 232593424 -10070929 - AluSx SINE Alu -12 300 1 24 0 0 29 chr1 232593424 232593439 -10070914 + AT_rich Low_complexity Low_complexity 20 34 0 284 324 27 0 chr1 232594246 232594320 -10070033 + L2 LINE L2 3196 3271 -1 457 221 32 11 chr1 232595017 232595112 -10069241 + MIR SINE MIR 20 116 -146 1257 157 9 14 chr1 232595766 232595983 -10068370 - AluJb SINE Alu -15 297 82 2034 138 10 13 chr1 232595990 232596302 -10068051 - AluSx SINE Alu -1 311 1 1934 139 17 14 chr1 232596411 232596706 -10067647 - AluSx SINE Alu -16 296 1 184 304 0 22 chr1 232596732 232596778 -10067575 + L2 LINE L2 3026 3070 -202 1409 149 14 0 chr1 232597119 232597340 -10067013 - AluSg/x SINE Alu -11 299 76 1473 133 34 111 chr1 232597394 232597718 -10066635 + AluJo SINE Alu 3 301 -11 1938 102 39 32 chr1 232597734 232598018 -10066335 + AluSg SINE Alu 5 290 -20 852 246 71 17 chr1 232598115 232598355 -10065998 + MIR SINE MIR 10 262 0 1901 152 7 0 chr1 232598514 232598803 -10065550 + AluSx SINE Alu 1 291 -21 310 348 30 15 chr1 232600676 232600853 -10063500 + MIR SINE MIR 2 184 -24 1822 103 78 0 chr1 232600981 232601252 -10063101 + AluSx SINE Alu 1 292 -20 440 258 108 10 chr1 232601266 232601460 -10062893 - L1ME2 LINE L1 -10 6154 5942 240 206 21 93 chr1 232602299 232602396 -10061957 + L2 LINE L2 3118 3207 -106 1293 226 113 8 chr1 232602409 232602808 -10061545 - Zaphod DNA AcHobo -1 4030 3590 * 2217 238 89 52 chr1 232602807 232602965 -10061388 - Zaphod DNA AcHobo -3047 984 833 1462 104 0 0 chr1 232602965 232603157 -10061196 - AluSg/x SINE Alu -15 294 103 2217 238 89 52 chr1 232603157 232603628 -10060725 - Zaphod DNA AcHobo -3198 833 310 2161 63 9 69 chr1 232603628 232603961 -10060392 + AluSq SINE Alu 1 313 0 2217 238 89 52 chr1 232603961 232604220 -10060133 - Zaphod DNA AcHobo -3721 310 62 260 340 39 0 chr1 232604234 232604337 -10060016 + L2 LINE L2 3207 3313 0 1223 208 36 26 chr1 232604560 232604868 -10059485 + AluJb SINE Alu 2 312 0 198 0 0 0 chr1 232605067 232605089 -10059264 + (T)n Simple_repeat Simple_repeat 1 22 0 1998 122 42 0 chr1 232605911 232606198 -10058155 - AluSq SINE Alu -14 299 1 308 296 104 54 chr1 232606276 232606498 -10057855 + L1ME4a LINE L1 4177 4419 -1727 441 0 0 0 chr1 232606498 232606547 -10057806 + (CA)n Simple_repeat Simple_repeat 2 50 0 308 296 104 54 chr1 232606547 232606621 -10057732 + L1ME4a LINE L1 4419 4488 -1658 369 288 37 65 chr1 232606666 232607020 -10057333 + L1ME4a LINE L1 4503 4846 -1300 2096 130 7 0 chr1 232607064 232607364 -10056989 + AluSx SINE Alu 1 302 -10 3152 250 152 17 chr1 232607512 232608726 -10055627 + L1MEc LINE L1 45 1422 -4974 198 98 59 20 chr1 232609016 232609067 -10055286 + (TATAA)n Simple_repeat Simple_repeat 5 57 0 36 94 0 0 chr1 232609244 232609350 -10055003 + AT_rich Low_complexity Low_complexity 1 106 0 416 256 24 16 chr1 232609376 232609501 -10054852 + L1ME4a LINE L1 5521 5646 -475 2224 107 3 3 chr1 232609501 232609800 -10054553 - AluSx SINE Alu -13 299 1 335 336 99 57 chr1 232610974 232611328 -10053025 - L2 LINE L2 -8 3264 2896 219 36 0 0 chr1 232612130 232612158 -10052195 + (TG)n Simple_repeat Simple_repeat 2 29 0 218 265 29 15 chr1 232612420 232612488 -10051865 - MIR3 SINE MIR -15 193 125 771 284 126 40 chr1 232612492 232612652 -10051701 + L1ME4a LINE L1 5432 5577 -544 1821 167 7 3 chr1 232612652 232612940 -10051413 - AluJb SINE Alu -23 289 1 771 284 126 40 chr1 232612940 232612977 -10051376 + L1ME4a LINE L1 5577 5609 -512 1746 138 0 80 chr1 232612977 232613303 -10051050 - AluJb SINE Alu 0 312 13 771 284 126 40 chr1 232613303 232613724 -10050629 + L1ME4a LINE L1 5609 6104 -17 501 296 22 7 chr1 232613727 232613862 -10050491 - MIR3 SINE MIR -62 146 10 2217 104 16 3 chr1 232614142 232614450 -10049903 + AluSx SINE Alu 1 312 0 433 245 131 43 chr1 232614870 232615161 -10049192 + L1ME4a LINE L1 5806 6121 0 1936 167 0 0 chr1 232615945 232616239 -10048114 + AluJb SINE Alu 1 294 -18 291 302 75 19 chr1 232617148 232617254 -10047099 - L2 LINE L2 -5 3267 3156 275 188 0 31 chr1 232617345 232617409 -10046944 - L1ME4a LINE L1 -69 6052 5991 342 0 0 0 chr1 232617606 232617644 -10046709 + (CA)n Simple_repeat Simple_repeat 2 39 0 1282 228 68 22 chr1 232617940 232618463 -10045890 + MLT1E LTR MaLR 1 593 0 1354 208 49 47 chr1 232618463 232618916 -10045437 + MLT1E-int LTR MaLR 1 571 -800 326 219 0 0 chr1 232618916 232618980 -10045373 + MLT1E-int LTR MaLR 538 601 -770 298 239 11 131 chr1 232619513 232619689 -10044664 + MLT1E-int LTR MaLR 984 1138 -233 1774 150 3 42 chr1 232619857 232620163 -10044190 + AluJb SINE Alu 1 294 -18 468 245 156 26 chr1 232620441 232620633 -10043720 + MLT1E-int LTR MaLR 1155 1371 0 2291 237 89 16 chr1 232620633 232621186 -10043167 + MLT1E LTR MaLR 1 593 0 1598 170 17 14 chr1 232621543 232621832 -10042521 + AluJo SINE Alu 1 290 -22 390 278 68 8 chr1 232621847 232621980 -10042373 + L1ME LINE L1 9 149 -5921 210 71 0 0 chr1 232622219 232622247 -10042106 + (T)n Simple_repeat Simple_repeat 1 28 0 395 173 0 37 chr1 232622266 232622347 -10042006 - L1MA9 LINE L1 0 6312 6235 423 245 25 25 chr1 232622454 232622613 -10041740 + L1M4 LINE L1 5238 5396 -750 1035 256 58 94 chr1 232622632 232622759 -10041594 + L2 LINE L2 2788 2918 -395 1946 118 0 104 chr1 232622759 232623105 -10041248 - AluSx SINE Alu 0 312 3 1035 256 58 94 chr1 232623105 232623514 -10040839 + L2 LINE L2 2918 3305 -8 2641 264 51 15 chr1 232624074 232625011 -10039342 + L1ME3A LINE L1 5178 6161 -9 352 248 105 29 chr1 232625201 232625306 -10039047 + MIR SINE MIR 39 151 -111 470 252 113 133 chr1 232625682 232626150 -10038203 + MLT1H1 LTR MaLR 90 550 -1 1099 161 148 14 chr1 232626152 232626375 -10037978 + AluJo SINE Alu 37 289 -23 317 228 4 193 chr1 232626606 232626834 -10037519 + MLT1-int LTR MaLR 421 605 -766 2133 117 3 0 chr1 232626841 232627140 -10037213 - AluSx SINE Alu -2 310 11 650 249 56 74 chr1 232628012 232628439 -10035914 + MLT1H1 LTR MaLR 142 550 -1 680 154 10 18 chr1 232628552 232628691 -10035662 - MLT1A2 LTR MaLR -11 379 226 1111 108 0 19 chr1 232628694 232628909 -10035444 + (TTTC)n Simple_repeat Simple_repeat 1 211 0 237 139 0 0 chr1 232628910 232628953 -10035400 + (TCCCC)n Simple_repeat Simple_repeat 3 45 0 * 736 136 7 14 chr1 232628945 232629085 -10035268 + (TTTC)n Simple_repeat Simple_repeat 1 139 0 254 32 0 0 chr1 232629096 232629127 -10035226 + AluY SINE Alu 246 276 -25 884 128 16 107 chr1 232629138 232629193 -10035160 - MLT1A2 LTR MaLR -204 170 112 2405 93 0 0 chr1 232629193 232629494 -10034859 + AluSg SINE Alu 1 301 -9 884 128 16 107 chr1 232629494 232629625 -10034728 - MLT1A2 LTR MaLR -262 112 1 660 312 98 33 chr1 232629627 232630056 -10034297 + L2 LINE L2 2857 3313 0 288 206 48 0 chr1 232630448 232630511 -10033842 + L1M3 LINE L1 5718 5783 -388 591 214 10 0 chr1 232630511 232630614 -10033739 + MER2 DNA MER2_type 1 104 -241 1831 116 109 0 chr1 232630614 232630881 -10033472 + AluSx SINE Alu 1 296 -16 328 102 0 0 chr1 232630881 232630930 -10033423 + L1MB2 LINE L1 6121 6169 -2 345 117 0 0 chr1 232631647 232631707 -10032646 + (TC)n Simple_repeat Simple_repeat 1 60 0 201 121 0 0 chr1 232631877 232631910 -10032443 + (TG)n Simple_repeat Simple_repeat 2 34 0 1945 148 3 3 chr1 232632246 232632544 -10031809 - AluSx SINE Alu -14 298 1 2219 108 0 7 chr1 232632748 232633053 -10031300 + AluSq SINE Alu 1 303 -10 27 0 0 0 chr1 232633053 232633080 -10031273 + AT_rich Low_complexity Low_complexity 1 27 0 1687 162 14 4 chr1 232633612 232633890 -10030463 + AluJo SINE Alu 6 286 -26 358 87 0 0 chr1 232633899 232633945 -10030408 - Alu SINE Alu -7 294 249 1955 118 4 0 chr1 232633945 232634217 -10030136 + AluSq SINE Alu 38 310 -3 252 86 0 0 chr1 232634223 232634258 -10030095 + (A)n Simple_repeat Simple_repeat 1 35 0 1788 145 7 7 chr1 232636329 232636612 -10027741 + AluSx SINE Alu 1 283 -29 204 40 0 0 chr1 232636612 232636637 -10027716 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 1790 156 42 3 chr1 232636856 232636977 -10027376 + AluJb SINE Alu 1 116 -196 180 0 0 0 chr1 232636977 232636997 -10027356 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1790 156 42 3 chr1 232636997 232637158 -10027195 + AluJb SINE Alu 116 294 -18 2481 70 3 0 chr1 232637315 232637616 -10026737 + AluSg SINE Alu 1 302 -8 1639 185 50 43 chr1 232637723 232638139 -10026214 + Charlie1b DNA MER1_type 41 459 -64 2196 102 27 0 chr1 232638141 232638436 -10025917 + AluSx SINE Alu 1 303 -9 1212 113 0 6 chr1 232638436 232638604 -10025749 + AluSq SINE Alu 134 300 -13 289 253 53 0 chr1 232638619 232638694 -10025659 + Charlie1b DNA MER1_type 445 523 0 283 261 130 83 chr1 232638932 232639015 -10025338 + MLT1L LTR MaLR 110 188 -427 2193 93 33 7 chr1 232639015 232639317 -10025036 - AluSx SINE Alu -1 311 2 283 261 130 83 chr1 232639317 232639449 -10024904 + MLT1L LTR MaLR 188 399 -216 440 211 204 20 chr1 232639774 232639926 -10024427 + AluSg/x SINE Alu 118 297 -13 242 149 15 15 chr1 232640426 232640493 -10023860 - Charlie1b DNA MER1_type -86 437 371 3063 75 5 0 chr1 232640494 232640893 -10023460 - L1PA13 LINE L1 -234 5929 5529 1370 68 0 171 chr1 232640893 232641156 -10023197 + L1PA13 LINE L1 5941 6159 -4 1814 153 3 11 chr1 232641352 232641659 -10022694 + AluJo SINE Alu 1 305 0 2425 65 3 19 chr1 232641780 232642087 -10022266 - AluY SINE Alu -9 302 1 256 81 16 48 chr1 232642800 232642862 -10021491 + (TTTTTA)n Simple_repeat Simple_repeat 1 60 0 1144 208 19 14 chr1 232643786 232644002 -10020351 + MER58A DNA MER1_type 2 218 -6 289 230 93 89 chr1 232645616 232645669 -10018684 - L1MC4a LINE L1 -1883 5925 5874 1776 92 4 17 chr1 232645669 232645907 -10018446 - AluSx SINE Alu -57 255 21 289 230 93 89 chr1 232645907 232645963 -10018390 - L1MC4a LINE L1 -1934 5874 5820 2475 76 3 0 chr1 232645963 232646264 -10018089 - AluSp SINE Alu -11 302 1 289 230 93 89 chr1 232646264 232646410 -10017943 - L1MC4a LINE L1 -1988 5820 5668 382 306 97 16 chr1 232646978 232647288 -10017065 - L1 LINE L1 -2203 3943 3609 1381 154 97 4 chr1 232647569 232647816 -10016537 + Tigger4(Zombi) DNA MER2_type 1 270 -2461 270 237 133 30 chr1 232647985 232648120 -10016233 + L1MC4a LINE L1 5760 5908 -1900 201 158 0 0 chr1 232648406 232648444 -10015909 + A-rich Low_complexity Low_complexity 2 39 0 2073 147 0 0 chr1 232648997 232649297 -10015056 - AluJb SINE Alu -12 300 1 2434 89 0 0 chr1 232649305 232649609 -10014744 - AluSc SINE Alu -5 304 1 1212 238 51 19 chr1 232650102 232650413 -10013940 + L1 LINE L1 2504 2824 -3322 * 7940 161 44 50 chr1 232650412 232650725 -10013628 + L1 LINE L1 3183 3496 -2650 2231 114 0 16 chr1 232650725 232651031 -10013322 + AluSx SINE Alu 3 303 -9 7940 161 44 50 chr1 232651031 232652142 -10012211 + L1 LINE L1 3496 4597 -1549 876 215 0 35 chr1 232652142 232652314 -10012039 + FRAM SINE Alu 1 166 0 7940 161 44 50 chr1 232652314 232652688 -10011665 + L1 LINE L1 4597 4972 -1174 301 253 27 0 chr1 232652691 232652766 -10011587 + L2 LINE L2 2963 3039 -274 2088 133 10 10 chr1 232652768 232653069 -10011284 - AluSx SINE Alu -11 301 1 228 170 0 38 chr1 232653070 232653123 -10011230 + MLT1E3 LTR MaLR 565 615 -9 1267 285 87 25 chr1 232653165 232653569 -10010784 + LTR16A LTR ERVL 22 450 0 2021 121 4 4 chr1 232653608 232653916 -10010437 - AluSx SINE Alu 0 308 1 313 230 81 145 chr1 232653926 232654146 -10010207 - L1M4 LINE L1 -1542 4604 4372 817 171 0 8 chr1 232654146 232654275 -10010078 - FLAM_A SINE Alu -5 128 1 313 230 81 145 chr1 232654275 232654460 -10009893 - L1M4 LINE L1 -1774 4372 4230 1778 151 10 27 chr1 232654460 232654758 -10009595 - AluSx SINE Alu -17 295 3 313 230 81 145 chr1 232654758 232654821 -10009532 - L1M4 LINE L1 -1916 4230 4165 1574 144 0 12 chr1 232654824 232654913 -10009440 + L1PB4 LINE L1 5914 6003 -153 1999 139 7 7 chr1 232654913 232655208 -10009145 + AluSx SINE Alu 1 295 -17 1574 144 0 12 chr1 232655208 232655361 -10008992 + L1PB4 LINE L1 6003 6153 -3 266 280 91 23 chr1 232655438 232655570 -10008783 - L1M4 LINE L1 -1986 4160 4020 254 204 0 0 chr1 232655676 232655720 -10008633 - L1M4 LINE L1 -2315 3831 3788 849 281 148 47 chr1 232655759 232656535 -10007818 + L2 LINE L2 2446 3312 -1 2345 94 0 13 chr1 232656670 232656979 -10007374 + AluSx SINE Alu 1 305 -7 228 296 57 0 chr1 232657311 232657399 -10006954 + MLT1K LTR MaLR 11 103 -485 303 230 14 0 chr1 232657958 232658032 -10006321 + MER116 DNA Mariner 1 75 -5 1399 63 69 0 chr1 232658127 232658302 -10006051 + U2 snRNA snRNA 1 187 -1 1746 78 0 0 chr1 232658587 232658805 -10005548 + AluSg/x SINE Alu 83 300 -12 456 169 0 13 chr1 232658875 232658952 -10005401 + FLAM_A SINE Alu 58 133 -9 2497 77 0 0 chr1 232658952 232659262 -10005091 + AluY SINE Alu 1 310 -1 23 54 0 0 chr1 232659263 232659300 -10005053 + AT_rich Low_complexity Low_complexity 1 37 0 2248 117 0 13 chr1 232659300 232659616 -10004737 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 232660345 232660366 -10003987 + AT_rich Low_complexity Low_complexity 1 21 0 387 319 159 0 chr1 232660721 232660928 -10003425 - MIR SINE MIR -12 250 11 2219 213 18 46 chr1 232661020 232661566 -10002787 + L1MD2 LINE L1 5813 6343 -16 30 27 0 0 chr1 232662008 232662045 -10002308 + AT_rich Low_complexity Low_complexity 1 37 0 3097 156 20 22 chr1 232662378 232662943 -10001410 + L1PA16 LINE L1 5472 6158 -8 389 123 0 0 chr1 232662943 232663005 -10001348 + L1PA16 LINE L1 6101 6165 -1 1039 241 87 87 chr1 232663143 232663336 -10001017 - L1ME3A LINE L1 -223 5947 5755 1742 206 150 29 chr1 232663336 232663783 -10000570 + MLT1D LTR MaLR 5 505 0 1039 241 87 87 chr1 232663783 232663889 -10000464 - L1ME3A LINE L1 -415 5755 5650 1673 169 67 0 chr1 232663889 232664173 -10000180 + AluJb SINE Alu 1 303 -9 1039 241 87 87 chr1 232664173 232664322 -10000031 - L1ME3A LINE L1 -520 5650 5502 2159 128 0 0 chr1 232664322 232664619 -9999734 - AluSx SINE Alu -10 302 6 1039 241 87 87 chr1 232664619 232664812 -9999541 - L1ME3A LINE L1 -667 5503 5304 527 256 17 11 chr1 232664834 232665010 -9999343 - L1MEd LINE L1 -4947 1172 996 796 267 125 48 chr1 232665010 232665403 -9998950 - L2 LINE L2 -4 3309 2887 182 103 26 103 chr1 232665429 232665468 -9998885 - L2 LINE L2 -517 2797 2762 1380 235 68 32 chr1 232665481 232666063 -9998290 - MER21B LTR ERV1 -107 756 103 392 219 37 12 chr1 232666107 232666189 -9998164 - MER21B LTR ERV1 -767 96 13 219 174 22 0 chr1 232666201 232666247 -9998106 - L2 LINE L2 -551 2763 2717 480 303 64 56 chr1 232666254 232666488 -9997865 - L2 LINE L2 -227 3086 2851 * 1573 293 89 9 chr1 232666481 232667163 -9997190 - L2 LINE L2 -912 2402 1666 970 115 200 2 chr1 232667165 232667463 -9996890 + MSTA LTR MaLR 3 423 -5 2229 128 0 0 chr1 232667463 232667767 -9996586 + AluSx SINE Alu 1 304 -8 1174 240 75 6 chr1 232667778 232668111 -9996242 - L2 LINE L2 -1646 1668 1313 726 305 139 26 chr1 232668113 232668730 -9995623 - L1MEd LINE L1 -5108 1011 325 2258 105 3 10 chr1 232669562 232669867 -9994486 + AluSx SINE Alu 1 303 -9 1904 104 13 66 chr1 232669892 232670210 -9994143 + AluSx SINE Alu 1 301 -11 583 202 47 16 chr1 232670354 232670483 -9993870 + AluJo SINE Alu 2 134 -178 208 325 56 24 chr1 232670783 232670909 -9993444 + MER5B DNA MER1_type 12 141 -37 309 226 59 20 chr1 232670805 232670907 -9993446 - MER5A DNA MER1_type -34 155 50 204 67 0 0 chr1 232671923 232671953 -9992400 + (CCCGG)n Simple_repeat Simple_repeat 3 32 0 320 231 37 19 chr1 232673056 232673164 -9991189 + MIR SINE MIR 153 262 0 2013 175 146 11 chr1 232673228 232673673 -9990680 - MLT1D LTR MaLR 0 505 1 422 165 200 0 chr1 232673687 232673772 -9990581 - MER45 DNA AcHobo -938 102 1 2478 86 3 0 chr1 232673856 232674158 -9990195 + AluSp SINE Alu 1 303 -10 1648 122 22 0 chr1 232675417 232675647 -9988706 - AluSg/x SINE Alu -1 309 75 1505 97 0 5 chr1 232675980 232676175 -9988178 - AluSg/x SINE Alu -6 304 111 2184 104 3 13 chr1 232676650 232676948 -9987405 - AluSp SINE Alu -18 295 1 493 101 14 0 chr1 232677666 232677735 -9986618 + MER107 DNA MER1_type 1 70 -127 2097 162 50 0 chr1 232677736 232678112 -9986241 + MER57A LTR ERV1 7 401 -2 744 99 0 0 chr1 232678114 232678215 -9986138 + MER107 DNA MER1_type 67 167 -30 3614 130 35 18 chr1 232678281 232678883 -9985470 + LTR9 LTR ERV1 1 612 0 2270 109 0 0 chr1 232680976 232681280 -9983073 - AluSc SINE Alu -5 304 1 240 59 0 0 chr1 232681953 232681987 -9982366 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 2179 92 4 0 chr1 232681991 232682263 -9982090 - AluSg SINE Alu -37 273 1 2381 67 0 39 chr1 232682311 232682623 -9981730 - AluY SINE Alu -11 300 1 1599 172 37 49 chr1 232682883 232683113 -9981240 - L1MC1 LINE L1 0 6333 6107 2212 123 0 0 chr1 232683113 232683415 -9980938 - AluSx SINE Alu -10 302 1 1599 172 37 49 chr1 232683415 232683533 -9980820 - L1MC1 LINE L1 -226 6107 5989 1955 139 67 6 chr1 232683902 232684246 -9980107 + MLT1A1 LTR MaLR 1 365 0 2320 105 3 0 chr1 232684494 232684789 -9979564 - AluSg SINE Alu -14 296 1 321 308 68 15 chr1 232684869 232685002 -9979351 + L3 LINE CR1 1438 1577 0 2166 117 7 7 chr1 232685306 232685613 -9978740 + AluSx SINE Alu 4 310 -2 2376 101 3 0 chr1 232685930 232686238 -9978115 + AluSq SINE Alu 1 309 -4 2276 106 13 3 chr1 232686496 232686798 -9977555 - AluSp SINE Alu -8 305 1 1765 182 7 0 chr1 232686969 232687266 -9977087 + AluJo SINE Alu 1 299 -13 2098 137 45 15 chr1 232687421 232687756 -9976597 + LTR3b LTR ERVK 156 500 0 239 289 80 36 chr1 232688189 232688345 -9976008 + MIR SINE MIR 42 198 -63 267 324 9 9 chr1 232688512 232688617 -9975736 + L2 LINE L2 3163 3267 -5 2146 111 3 3 chr1 232688706 232689004 -9975349 - AluSg SINE Alu -12 298 1 183 129 0 0 chr1 232689013 232689044 -9975309 + (T)n Simple_repeat Simple_repeat 1 31 0 1851 86 13 0 chr1 232689045 232689278 -9975075 - AluSc SINE Alu -69 240 5 2279 115 0 0 chr1 232690101 232690405 -9973948 + AluSx SINE Alu 1 304 -8 2077 117 20 3 chr1 232690869 232691169 -9973184 + AluSx SINE Alu 1 305 -7 361 229 0 0 chr1 232691328 232691398 -9972955 + U13 snRNA snRNA 1 70 -34 2200 192 116 72 chr1 232691398 232692149 -9972204 + LTR1B LTR ERV1 1 784 -42 329 178 82 0 chr1 232692938 232693011 -9971342 + L1MB4 LINE L1 5753 5831 -352 488 56 0 0 chr1 232693020 232693091 -9971262 - AluJo SINE Alu 0 312 242 981 134 13 38 chr1 232693091 232693248 -9971105 - AluJo SINE Alu -159 153 1 2283 130 11 3 chr1 232693248 232693610 -9970743 + L1MB4 LINE L1 5816 6180 0 795 167 8 0 chr1 232693623 232693755 -9970598 + FLAM_C SINE Alu 1 133 0 185 62 0 31 chr1 232693755 232693787 -9970566 + (GGAGAA)n Simple_repeat Simple_repeat 4 34 0 316 310 76 21 chr1 232694901 232695046 -9969307 - MIR SINE MIR 0 262 110 361 277 11 0 chr1 232695148 232695242 -9969111 + MIR SINE MIR 46 140 -68 2126 132 0 0 chr1 232695807 232696102 -9968251 + AluSx SINE Alu 6 300 -12 235 260 0 20 chr1 232696265 232696334 -9968019 + MIR SINE MIR 78 144 -64 579 194 228 6 chr1 232696357 232696537 -9967816 - MIR SINE MIR -28 234 15 2367 98 3 0 chr1 232696979 232697276 -9967077 - AluSx SINE Alu -14 298 1 321 272 23 92 chr1 232697339 232697512 -9966841 + Charlie8 DNA MER1_type 5 165 -2252 777 184 0 0 chr1 232697513 232697649 -9966704 + FLAM_C SINE Alu 1 136 -7 277 290 99 23 chr1 232697671 232697802 -9966551 + Charlie8 DNA MER1_type 142 282 -2135 2322 114 0 0 chr1 232698921 232699229 -9965124 - AluSx SINE Alu 0 312 5 2330 94 0 0 chr1 232699837 232700134 -9964219 - AluSg SINE Alu -13 297 1 1145 74 0 0 chr1 232700134 232700269 -9964084 - AluSq/x SINE Alu -178 135 1 650 297 77 77 chr1 232700595 232700907 -9963446 - ERVL LTR ERVL -1297 4467 4153 2332 96 10 0 chr1 232700907 232701208 -9963145 + AluSx SINE Alu 1 304 -8 650 297 77 77 chr1 232701208 232701309 -9963044 - ERVL LTR ERVL -1610 4154 4054 374 240 73 0 chr1 232701472 232701568 -9962785 - MER20 DNA MER1_type -71 148 46 1798 181 0 0 chr1 232702535 232702816 -9961537 + AluJb SINE Alu 9 289 -23 1802 131 15 4 chr1 232702840 232703114 -9961239 - MER2 DNA MER2_type -66 279 3 2260 113 7 0 chr1 232703420 232703722 -9960631 + AluSx SINE Alu 1 304 -8 1441 190 48 37 chr1 232704453 232704557 -9959796 - AluJb SINE Alu -13 299 198 4358 78 2 2 chr1 232704557 232705108 -9959245 + MER41A LTR ERV1 1 551 -3 1441 190 48 37 chr1 232705108 232705298 -9959055 - AluJb SINE Alu -114 198 2 1819 129 14 28 chr1 232705329 232705615 -9958738 + AluSq SINE Alu 1 282 -31 396 0 0 0 chr1 232705619 232705663 -9958690 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1610 152 106 25 chr1 232705798 232705960 -9958393 + AluJb SINE Alu 2 149 -163 3934 116 15 81 chr1 232705960 232706700 -9957653 + LTR8 LTR ERV1 1 691 0 1610 152 106 25 chr1 232706700 232706820 -9957533 + AluJb SINE Alu 149 307 -5 786 185 0 15 chr1 232706904 232707039 -9957314 - FLAM_A SINE Alu 0 133 1 848 151 0 0 chr1 232707143 232707269 -9957084 + FLAM_C SINE Alu 1 126 -7 317 155 0 11 chr1 232707296 232707359 -9956994 + Alu SINE Alu 245 296 -6 2275 105 6 13 chr1 232707407 232707721 -9956632 - AluSx SINE Alu 0 312 1 863 135 0 16 chr1 232707905 232708031 -9956322 - FLAM_C SINE Alu -19 124 1 2307 94 0 19 chr1 232708264 232708572 -9955781 - AluSq SINE Alu -11 302 1 481 251 200 10 chr1 232708760 232708955 -9955398 - MIR SINE MIR -12 250 19 219 36 0 0 chr1 232709053 232709081 -9955272 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 438 20 0 0 chr1 232709080 232709131 -9955222 + (CA)n Simple_repeat Simple_repeat 1 51 0 2237 112 3 0 chr1 232709586 232709882 -9954471 - AluSx SINE Alu -15 297 1 25 31 0 0 chr1 232710561 232710593 -9953760 + AT_rich Low_complexity Low_complexity 1 32 0 5212 198 73 80 chr1 232711700 232712136 -9952217 + L1M3 LINE L1 779 1216 -5166 197 33 33 0 chr1 232712136 232712166 -9952187 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 667 115 0 0 chr1 232712166 232712253 -9952100 - AluSg/x SINE Alu -32 280 194 5212 198 73 80 chr1 232712253 232712352 -9952001 + L1M3 LINE L1 1215 1313 -5069 4325 82 3 75 chr1 232712352 232713009 -9951344 - LTR66 LTR ERVL 0 610 1 5212 198 73 80 chr1 232713009 232713250 -9951103 + L1M3 LINE L1 1313 1554 -4828 1927 144 3 34 chr1 232713250 232713548 -9950805 + AluJo SINE Alu 1 289 -23 5212 198 73 80 chr1 232713548 232715150 -9949203 + L1M3 LINE L1 1554 3284 -3098 2524 70 0 0 chr1 232715150 232715452 -9948901 + AluY SINE Alu 1 302 -9 5212 198 73 80 chr1 232715452 232715793 -9948560 + L1M3 LINE L1 3284 3626 -2756 1190 184 24 12 chr1 232715789 232716039 -9948314 + L1M3 LINE L1 3836 4088 -2294 * 233 159 0 0 chr1 232716030 232716074 -9948279 + L1M3 LINE L1 5827 5870 -549 * 256 135 0 0 chr1 232716075 232716112 -9948241 + L1M3 LINE L1 5851 5887 -532 835 168 0 0 chr1 232716112 232716249 -9948104 + LTR47A LTR ERVL 1 137 -315 703 144 54 0 chr1 232716278 232716389 -9947964 + LTR47A LTR ERVL 336 452 0 847 104 37 85 chr1 232716397 232716476 -9947877 + L1M3 LINE L1 5890 5961 -458 2165 107 0 0 chr1 232716476 232716789 -9947564 + AluSx SINE Alu 1 281 -31 847 104 37 85 chr1 232716789 232716871 -9947482 + L1M3 LINE L1 5961 6045 -374 550 251 192 39 chr1 232716850 232717236 -9947117 - L1MC4 LINE L1 -860 6948 6488 * 2314 81 3 0 chr1 232717335 232717654 -9946699 + AluSp SINE Alu 1 320 0 617 195 8 23 chr1 232717994 232718122 -9946231 - FLAM_A SINE Alu -7 126 1 306 249 177 0 chr1 232718365 232718546 -9945807 - L1MEc LINE L1 -5189 1670 1458 310 215 15 0 chr1 232718559 232718624 -9945729 + MER58 DNA MER1_type 2355 2420 0 540 354 33 0 chr1 232718917 232719191 -9945162 - L1MEc LINE L1 -6015 1123 841 2232 129 0 3 chr1 232719208 232719518 -9944835 + AluSx SINE Alu 1 309 -3 2430 90 0 0 chr1 232719663 232719962 -9944391 + AluSg SINE Alu 1 299 -11 464 17 33 0 chr1 232720440 232720500 -9943853 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1100 171 0 0 chr1 232720512 232720676 -9943677 - AluJb SINE Alu -20 292 129 24 0 0 0 chr1 232720676 232720700 -9943653 + AT_rich Low_complexity Low_complexity 1 24 0 362 309 50 6 chr1 232721239 232721420 -9942933 + L1MEd LINE L1 913 1101 -5018 2287 103 7 0 chr1 232721636 232721937 -9942416 - AluSx SINE Alu -9 303 1 640 191 56 0 chr1 232722315 232722441 -9941912 + AluJo SINE Alu 2 134 -178 366 107 0 0 chr1 232722441 232722497 -9941856 + (CA)n Simple_repeat Simple_repeat 2 57 0 532 212 34 84 chr1 232722749 232722844 -9941509 + LTR65 LTR ERV1 1 84 -585 1870 112 81 34 chr1 232722844 232723166 -9941187 + MER1B DNA MER1_type 1 337 0 532 212 34 84 chr1 232723166 232723249 -9941104 + LTR65 LTR ERV1 84 170 -499 382 273 55 62 chr1 232723352 232723580 -9940773 + LTR65 LTR ERV1 384 663 -6 243 264 174 77 chr1 232723906 232723935 -9940418 - MIR SINE MIR -81 181 156 2298 92 20 0 chr1 232723935 232724228 -9940125 - AluSx SINE Alu -13 299 1 243 264 174 77 chr1 232724228 232724353 -9940000 - MIR SINE MIR -106 156 12 197 212 15 76 chr1 232724476 232724531 -9939822 + L2 LINE L2 2252 2304 -1010 2215 227 29 31 chr1 232724531 232724817 -9939536 - LTR40a LTR ERVL 0 519 233 2102 117 3 52 chr1 232724817 232725126 -9939227 + AluSx SINE Alu 1 294 -18 2215 227 29 31 chr1 232725126 232725359 -9938994 - LTR40a LTR ERVL -286 233 1 1235 208 34 0 chr1 232725369 232725605 -9938748 - HERVL40 LTR ERVL -10 5520 5277 2184 115 0 3 chr1 232725882 232726211 -9938142 + AluSx SINE Alu 1 328 0 1126 251 51 135 chr1 232726412 232727250 -9937103 - HERVL40 LTR ERVL -333 4683 2035 1815 145 29 35 chr1 232727264 232727574 -9936779 + AluJb SINE Alu 1 308 -4 1665 178 47 102 chr1 232727881 232728195 -9936158 - MER31B LTR ERV1 -3 463 184 2045 139 3 0 chr1 232728195 232728496 -9935857 + AluSx SINE Alu 1 302 -10 1665 178 47 102 chr1 232728496 232728671 -9935682 - MER31B LTR ERV1 -282 184 1 1679 198 0 19 chr1 232728838 232729151 -9935202 + AluJo SINE Alu 3 309 -3 722 172 0 45 chr1 232729269 232729403 -9934950 + MER33 DNA MER1_type 1 128 -196 5494 146 35 18 chr1 232729664 232729961 -9934392 + L1MA4 LINE L1 5306 5596 -704 2089 87 73 0 chr1 232729961 232730247 -9934106 + AluSq SINE Alu 1 307 -6 5494 146 35 18 chr1 232730247 232730919 -9933434 + L1MA4 LINE L1 5596 6292 -8 510 234 8 24 chr1 232731092 232731216 -9933137 - L2 LINE L2 -4 3309 3188 2177 106 0 10 chr1 232731272 232731565 -9932788 - AluSx SINE Alu -22 290 1 2290 109 6 10 chr1 232732254 232732567 -9931786 + AluSx SINE Alu 1 312 0 2246 112 0 10 chr1 232732582 232732886 -9931467 + AluSx SINE Alu 1 301 -11 198 241 0 19 chr1 232733897 232733951 -9930402 + L2 LINE L2 3188 3240 -32 2248 105 0 19 chr1 232734292 232734607 -9929746 + AluSq SINE Alu 3 311 -2 642 121 61 68 chr1 232734768 232734900 -9929453 + AluSg SINE Alu 2 132 -178 293 197 14 0 chr1 232734900 232734971 -9929382 + (TA)n Simple_repeat Simple_repeat 2 73 0 861 163 21 0 chr1 232734980 232735121 -9929232 + AluJb SINE Alu 148 291 -21 22 0 0 0 chr1 232736304 232736326 -9928027 + AT_rich Low_complexity Low_complexity 1 22 0 1660 172 0 56 chr1 232736327 232736646 -9927707 + AluJo SINE Alu 1 301 -11 2410 86 0 3 chr1 232736648 232736950 -9927403 + AluSq SINE Alu 1 301 -12 2391 93 6 0 chr1 232737126 232737437 -9926916 - AluSp SINE Alu 0 313 1 360 311 37 67 chr1 232737491 232737577 -9926776 + L1MEd LINE L1 818 905 -5214 2180 123 7 0 chr1 232737577 232737885 -9926468 + AluSx SINE Alu 1 310 -2 360 311 37 67 chr1 232737885 232738097 -9926256 + L1MEd LINE L1 905 1107 -5012 21 0 0 0 chr1 232739329 232739350 -9925003 + AT_rich Low_complexity Low_complexity 1 21 0 871 155 0 0 chr1 232739394 232739523 -9924830 - FLAM_A SINE Alu -2 140 12 1832 90 7 70 chr1 232739537 232739674 -9924679 - AluSx SINE Alu -22 290 181 4786 53 66 96 chr1 232739674 232740187 -9924166 - MER4E LTR ERV1 0 766 284 2113 119 24 0 chr1 232740187 232740482 -9923871 + AluSx SINE Alu 4 305 -7 4786 53 66 96 chr1 232740482 232740758 -9923595 - MER4E LTR ERV1 -482 284 1 1832 90 7 70 chr1 232740758 232740919 -9923434 - AluSx SINE Alu -131 181 11 731 113 0 48 chr1 232740927 232741051 -9923302 - LTR54 LTR ERV1 -93 417 300 1695 124 52 24 chr1 232741061 232741352 -9923001 + LTR23 LTR ERV1 1 299 -138 781 181 14 0 chr1 232741367 232741505 -9922848 + FRAM SINE Alu 21 160 -16 806 137 34 20 chr1 232741506 232741652 -9922701 + LTR23 LTR ERV1 290 437 0 271 73 0 24 chr1 232741652 232741682 -9922671 - LTR54 LTR ERV1 -276 234 206 3355 125 8 25 chr1 232741683 232741792 -9922561 - MER41E LTR ERV1 0 512 403 2325 76 28 0 chr1 232741792 232742082 -9922271 + AluSc SINE Alu 1 298 -11 3355 125 8 25 chr1 232742082 232742491 -9921862 - MER41E LTR ERV1 -109 403 3 1138 158 37 19 chr1 232742562 232742777 -9921576 - LTR54 LTR ERV1 -291 219 1 1733 174 0 35 chr1 232742777 232742920 -9921433 + AluJo SINE Alu 1 147 -165 2344 98 0 0 chr1 232742920 232743215 -9921138 + AluSx SINE Alu 1 295 -17 1733 174 0 35 chr1 232743215 232743388 -9920965 + AluJo SINE Alu 147 306 -6 263 191 119 0 chr1 232743545 232743629 -9920724 + MIR SINE MIR 45 138 -70 2359 80 7 0 chr1 232743754 232744053 -9920300 + AluSg SINE Alu 1 301 -9 458 246 9 9 chr1 232744679 232744793 -9919560 + MIR SINE MIR 38 151 -111 3749 160 24 12 chr1 232744795 232745458 -9918895 + LTR51 LTR ERV1 1 671 0 2504 93 0 0 chr1 232745852 232746164 -9918189 - AluSq SINE Alu -1 312 1 336 71 0 0 chr1 232746282 232746324 -9918029 + MER4E LTR ERV1 653 694 -72 24 32 0 0 chr1 232746324 232746355 -9917998 + AT_rich Low_complexity Low_complexity 1 31 0 1523 201 29 127 chr1 232746845 232747096 -9917257 + Charlie1a DNA MER1_type 41 315 -2446 183 42 0 0 chr1 232747096 232747120 -9917233 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1523 201 29 127 chr1 232747120 232747156 -9917197 + Charlie1a DNA MER1_type 315 353 -2408 2245 108 0 0 chr1 232747156 232747461 -9916892 + AluSq SINE Alu 1 305 -8 1523 201 29 127 chr1 232747461 232747660 -9916693 + Charlie1a DNA MER1_type 353 480 -975 682 99 30 0 chr1 232747664 232747765 -9916588 - MSTB1 LTR MaLR -4 428 325 1405 122 14 75 chr1 232747767 232747812 -9916541 + LTR54 LTR ERV1 250 296 -214 1804 194 111 3 chr1 232747812 232748198 -9916155 - MSTA LTR MaLR 0 428 1 1405 122 14 75 chr1 232748198 232748219 -9916134 + LTR54 LTR ERV1 296 317 -193 2001 141 10 7 chr1 232748219 232748525 -9915828 - AluSq SINE Alu -6 307 1 1405 122 14 75 chr1 232748525 232748735 -9915618 + LTR54 LTR ERV1 317 510 0 4033 140 29 0 chr1 232748759 232749415 -9914938 - L1P LINE L1 -3010 3136 2462 1282 213 51 67 chr1 232749588 232749870 -9914483 + MLT1A1 LTR MaLR 1 277 -88 2252 124 48 25 chr1 232749870 232750226 -9914127 - THE1B LTR MaLR 0 364 1 1282 213 51 67 chr1 232750226 232750314 -9914039 + MLT1A1 LTR MaLR 277 365 0 1648 187 7 23 chr1 232750387 232750697 -9913656 + AluJo SINE Alu 1 305 -7 504 258 97 32 chr1 232750819 232750892 -9913461 - LTR33A LTR ERVL 0 523 456 2063 152 0 3 chr1 232750892 232751201 -9913152 - AluJb SINE Alu -4 308 1 504 258 97 32 chr1 232751201 232751344 -9913009 - LTR33A LTR ERVL -67 456 293 189 0 0 0 chr1 232751388 232751409 -9912944 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2182 257 34 25 chr1 232751420 232751642 -9912711 - L1ME1 LINE L1 -7 6159 5940 2138 91 3 55 chr1 232751642 232751984 -9912369 - AluSx SINE Alu 0 312 1 2182 257 34 25 chr1 232751984 232752433 -9911920 - L1ME1 LINE L1 -226 5940 5482 753 182 15 8 chr1 232752438 232752570 -9911783 - FRAM SINE Alu -20 156 24 2092 226 31 12 chr1 232752570 232753224 -9911129 - L1ME1 LINE L1 -743 5403 4824 606 179 145 8 chr1 232753238 232753355 -9910998 + FLAM_C SINE Alu 1 133 0 243 0 0 0 chr1 232753361 232753388 -9910965 + (TA)n Simple_repeat Simple_repeat 2 28 0 723 146 8 62 chr1 232753391 232753521 -9910832 - FLAM_C SINE Alu -19 124 2 247 204 0 0 chr1 232753532 232753586 -9910767 - L1MCa LINE L1 -1312 5114 5061 1022 131 187 0 chr1 232753603 232753801 -9910552 + MSTA LTR MaLR 1 235 -193 865 116 0 0 chr1 232753801 232753913 -9910440 + FLAM_C SINE Alu 13 124 -19 189 0 0 0 chr1 232753920 232753941 -9910412 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 596 153 0 0 chr1 232753962 232754047 -9910306 - AluJ/FLAM SINE Alu -226 86 2 921 136 29 0 chr1 232754097 232754237 -9910116 + MSTA LTR MaLR 245 388 -40 1572 139 158 0 chr1 232754238 232754504 -9909849 + AluSx SINE Alu 1 308 -4 3446 225 44 6 chr1 232754617 232755505 -9908848 - L1 LINE L1 -1349 4797 3876 1869 184 10 0 chr1 232755506 232755815 -9908538 - AluJb SINE Alu 0 312 1 927 111 7 30 chr1 232755823 232755958 -9908395 - AluJo SINE Alu -177 135 4 3474 262 69 26 chr1 232755991 232757149 -9907204 - L1MEc LINE L1 -5036 1360 142 2296 91 0 23 chr1 232757149 232757458 -9906895 + AluSx SINE Alu 1 302 -10 3474 262 69 26 chr1 232757458 232757567 -9906786 - L1MEc LINE L1 -6254 142 39 221 0 35 0 chr1 232757575 232757604 -9906749 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2064 108 4 0 chr1 232757604 232757883 -9906470 - AluSx SINE Alu -32 280 1 895 143 0 0 chr1 232757886 232758019 -9906334 - AluJo/FLAM SINE Alu -169 133 1 1760 156 10 14 chr1 232758185 232758480 -9905873 + AluJo SINE Alu 5 298 -14 2334 89 10 0 chr1 232758790 232759094 -9905259 - AluSp SINE Alu -6 307 1 886 116 8 0 chr1 232759327 232759448 -9904905 - FLAM_C SINE Alu -11 122 1 1161 258 0 3 chr1 232759454 232759753 -9904600 - L1MCa LINE L1 -1393 5033 4736 2149 143 77 54 chr1 232759764 232759914 -9904439 + LTR47A LTR ERVL 1 146 -306 2362 88 16 0 chr1 232759914 232760219 -9904134 + AluSp SINE Alu 1 310 -3 2149 143 77 54 chr1 232760219 232760425 -9903928 + LTR47A LTR ERVL 146 371 -81 4979 79 38 24 chr1 232760425 232760493 -9903860 - LTR8 LTR ERV1 0 691 625 2042 131 3 3 chr1 232760493 232760784 -9903569 + AluSx SINE Alu 1 291 -21 4979 79 38 24 chr1 232760784 232761396 -9902957 - LTR8 LTR ERV1 -66 625 1 2149 143 77 54 chr1 232761396 232761480 -9902873 + LTR47A LTR ERVL 371 452 0 6715 209 24 43 chr1 232761484 232761924 -9902429 - L1MCa LINE L1 -1701 4725 4278 2374 86 0 7 chr1 232761924 232762226 -9902127 - AluSq SINE Alu -13 300 1 6715 209 24 43 chr1 232762226 232762295 -9902058 - L1MCa LINE L1 -2148 4278 4209 2139 124 3 13 chr1 232762295 232762610 -9901743 - AluSx SINE Alu 0 312 1 6715 209 24 43 chr1 232762610 232763269 -9901084 - L1MCa LINE L1 -2217 4209 3539 2535 67 0 0 chr1 232763269 232763569 -9900784 - AluY SINE Alu -11 300 1 2201 117 0 0 chr1 232763569 232763860 -9900493 - AluSx SINE Alu -21 291 1 6715 209 24 43 chr1 232763860 232764590 -9899763 - L1MCa LINE L1 -2885 3541 2861 386 83 0 17 chr1 232764601 232764661 -9899692 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 1153 155 135 5 chr1 232764661 232764861 -9899492 - AluJo SINE Alu -24 288 63 2923 171 43 1 chr1 232764863 232765725 -9898628 - L1MCa LINE L1 -3603 2823 1932 2417 106 0 0 chr1 232765728 232766040 -9898313 + AluSx SINE Alu 1 312 0 1367 185 0 0 chr1 232766042 232766269 -9898084 + AluJo SINE Alu 84 310 -2 3872 166 31 33 chr1 232766272 232766290 -9898063 - L1MCc LINE L1 -4578 2029 2012 2122 134 7 0 chr1 232766290 232766589 -9897764 - AluSx SINE Alu -11 301 1 3872 166 31 33 chr1 232766589 232767483 -9896870 - L1MCc LINE L1 -4595 2012 921 2145 120 0 0 chr1 232767500 232767810 -9896543 - AluSx SINE Alu 0 310 1 922 154 39 25 chr1 232767813 232768022 -9896331 + L1MB8 LINE L1 5615 5827 -303 864 92 0 0 chr1 232768023 232768132 -9896221 + AluJb SINE Alu 3 111 -201 4130 154 89 35 chr1 232768232 232768323 -9896030 - L1MCc LINE L1 -5500 926 841 2480 82 7 0 chr1 232768323 232768629 -9895724 + AluSc SINE Alu 1 308 -1 4130 154 89 35 chr1 232768629 232769382 -9894971 - L1MCc LINE L1 -5585 841 37 2341 81 0 0 chr1 232769833 232770144 -9894209 + AluSx SINE Alu 1 311 0 2254 101 0 16 chr1 232770242 232770559 -9893794 + AluSx SINE Alu 1 312 0 33 56 0 0 chr1 232771287 232771341 -9893012 + AT_rich Low_complexity Low_complexity 1 54 0 892 194 6 6 chr1 232771464 232771634 -9892719 - FAM SINE Alu -5 170 1 1352 272 2 23 chr1 232771651 232772045 -9892308 - L1ME1 LINE L1 -5 6161 5776 251 71 24 0 chr1 232772045 232772087 -9892266 + (TTTTTA)n Simple_repeat Simple_repeat 4 46 0 546 103 23 0 chr1 232772089 232772176 -9892177 - L1PA5 LINE L1 -1 6153 6065 528 254 99 10 chr1 232772176 232772377 -9891976 - L1MEc LINE L1 -4329 2067 1849 226 147 0 0 chr1 232772377 232772411 -9891942 + Alu SINE Alu 136 169 -134 4005 243 63 44 chr1 232772417 232772555 -9891798 - L1MEc LINE L1 -4673 1542 1408 743 164 22 30 chr1 232772555 232772689 -9891664 - FLAM_A SINE Alu 0 133 1 4005 243 63 44 chr1 232772689 232773858 -9890495 - L1MEc LINE L1 -4807 1408 234 2136 127 27 0 chr1 232773858 232774150 -9890203 + AluSx SINE Alu 1 300 -12 4005 243 63 44 chr1 232774150 232774352 -9890001 - L1MEc LINE L1 -5981 234 37 1577 204 7 3 chr1 232774467 232774773 -9889580 + AluJb SINE Alu 1 307 0 453 303 154 5 chr1 232774800 232775150 -9889203 - L1ME1 LINE L1 -312 5809 5382 1439 191 53 11 chr1 232775151 232775434 -9888919 - AluJo SINE Alu -17 295 1 470 124 62 62 chr1 232775449 232775546 -9888807 - FLAM_C SINE Alu -16 127 31 23 33 0 0 chr1 232775620 232775650 -9888703 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr1 232775705 232775732 -9888621 + AT_rich Low_complexity Low_complexity 1 27 0 2524 66 0 3 chr1 232775872 232776177 -9888176 + AluY SINE Alu 1 304 -7 2271 121 0 0 chr1 232776187 232776485 -9887868 + AluSq SINE Alu 1 298 -15 282 56 0 0 chr1 232776552 232776588 -9887765 + (TCTCCC)n Simple_repeat Simple_repeat 2 37 0 32 0 0 0 chr1 232777361 232777393 -9886960 + AT_rich Low_complexity Low_complexity 1 32 0 1713 171 27 7 chr1 232778070 232778362 -9885991 + AluJb SINE Alu 1 298 -14 287 179 0 13 chr1 232778734 232778812 -9885541 + GA-rich Low_complexity Low_complexity 3 79 0 208 304 25 0 chr1 232779138 232779217 -9885136 + MIR SINE MIR 182 262 0 2445 81 0 3 chr1 232779296 232779594 -9884759 - AluSc SINE Alu -12 297 1 2334 109 0 0 chr1 232779986 232780288 -9884065 - AluSx SINE Alu -10 302 1 2093 115 3 7 chr1 232780292 232780610 -9883743 - AluSq SINE Alu 0 317 1 237 261 17 61 chr1 232780680 232780795 -9883558 + L1MC/D LINE L1 5765 5874 -1934 2207 101 0 7 chr1 232780912 232781200 -9883153 + AluSx SINE Alu 1 286 -26 2297 96 0 10 chr1 232781813 232782106 -9882247 + AluSc SINE Alu 1 290 -19 2410 102 0 6 chr1 232782358 232782672 -9881681 - AluSx SINE Alu 0 312 1 255 273 0 45 chr1 232782953 232783041 -9881312 - MER94 DNA DNA -50 84 1 692 199 8 0 chr1 232783052 232783183 -9881170 + FRAM SINE Alu 22 153 -23 26 0 0 0 chr1 232783698 232783724 -9880629 + AT_rich Low_complexity Low_complexity 1 26 0 1688 214 111 38 chr1 232783988 232784659 -9879694 - MER21B LTR ERV1 -54 809 19 324 243 0 14 chr1 232784681 232784751 -9879602 - MER21B LTR ERV1 -773 90 22 837 110 0 0 chr1 232784756 232784910 -9879443 + (TTCC)n Simple_repeat Simple_repeat 1 154 0 1433 151 4 0 chr1 232784910 232785135 -9879218 - AluJo SINE Alu -5 307 82 810 166 7 0 chr1 232785861 232786000 -9878353 + FLAM_C SINE Alu 1 140 -3 2193 126 0 3 chr1 232786010 232786311 -9878042 + AluSq SINE Alu 1 300 -13 412 211 5 165 chr1 232786730 232786796 -9877557 + MER91B DNA MER1_type 23 98 -92 842 152 8 0 chr1 232786796 232786928 -9877425 + FLAM_C SINE Alu 1 133 0 412 211 5 165 chr1 232786928 232787055 -9877298 + MER91B DNA MER1_type 98 185 -5 2206 138 0 0 chr1 232787649 232787960 -9876393 - AluSx SINE Alu -1 311 1 1425 200 0 4 chr1 232788156 232788406 -9875947 + AluJo SINE Alu 14 262 -50 674 150 75 0 chr1 232788410 232788530 -9875823 + MLT1A2 LTR MaLR 246 374 0 348 200 17 7 chr1 232788533 232788624 -9875729 + MLT1A2-int LTR MaLR 4 94 -1277 728 218 34 50 chr1 232788871 232789050 -9875303 - MER45A DNA AcHobo -2 176 1 1802 138 47 7 chr1 232789110 232789407 -9874946 - AluJb SINE Alu -3 309 1 476 164 301 20 chr1 232789438 232789584 -9874769 + MER5A DNA MER1_type 2 188 -1 206 241 205 27 chr1 232789820 232789932 -9874421 - MIR3 SINE MIR -66 142 11 2452 87 3 3 chr1 232790782 232791091 -9873262 + AluSx SINE Alu 1 309 -3 5410 183 32 15 chr1 232791226 232792324 -9872029 + L1MC2 LINE L1 4992 6111 -233 2395 103 0 0 chr1 232792324 232792626 -9871727 + AluSx SINE Alu 1 302 -10 5410 183 32 15 chr1 232792626 232792843 -9871510 + L1MC2 LINE L1 6111 6323 -21 1065 310 66 21 chr1 232793067 232793636 -9870717 + L1ME3 LINE L1 5356 5951 -211 23 0 0 0 chr1 232793893 232793916 -9870437 + AT_rich Low_complexity Low_complexity 1 23 0 1483 180 70 12 chr1 232794805 232795149 -9869204 - MLT1A1 LTR MaLR -1 364 1 186 348 123 14 chr1 232795149 232795287 -9869066 + L2 LINE L2 2470 2622 -692 210 313 104 43 chr1 232795674 232795789 -9868564 + L2 LINE L2 3143 3264 -8 262 265 43 43 chr1 232795827 232795944 -9868409 + L2 LINE L2 3193 3309 -4 180 0 0 0 chr1 232796107 232796127 -9868226 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 928 156 44 12 chr1 232796257 232796417 -9867936 + FRAM SINE Alu 1 165 -1 2281 82 20 0 chr1 232797615 232797907 -9866446 + AluSp SINE Alu 1 298 -15 212 81 81 0 chr1 232798348 232798385 -9865968 + L2 LINE L2 3265 3304 -9 2325 110 7 0 chr1 232799467 232799777 -9864576 - AluSx SINE Alu 0 312 1 269 240 173 10 chr1 232800023 232800127 -9864226 - L2 LINE L2 0 3313 3193 403 301 14 0 chr1 232801562 232801708 -9862645 + MIR SINE MIR 80 227 -35 2453 125 75 8 chr1 232802107 232802506 -9861847 - MSTB LTR MaLR 0 426 1 237 158 26 0 chr1 232802658 232802696 -9861657 + MLT1D LTR MaLR 5 43 -462 872 165 55 0 chr1 232802696 232802878 -9861475 + L1MA8 LINE L1 5859 6050 -241 1162 142 107 27 chr1 232802878 232803103 -9861250 + MLT1D LTR MaLR 255 497 -8 232 368 37 0 chr1 232804235 232804371 -9859982 - MIR SINE MIR -3 259 119 242 259 0 35 chr1 232804622 232804707 -9859646 + CT-rich Low_complexity Low_complexity 2 83 0 243 291 0 64 chr1 232804981 232805091 -9859262 + MIR3 SINE MIR 5 107 -101 626 235 81 20 chr1 232807506 232807798 -9856555 - L1M LINE L1 -743 5403 5100 1248 101 112 0 chr1 232808083 232808262 -9856091 + MER30 DNA MER1_type 1 199 -31 2164 76 17 31 chr1 232809433 232809745 -9854608 + AluY SINE Alu 1 308 0 2166 113 3 10 chr1 232811895 232812205 -9852148 + AluSx SINE Alu 1 308 -4 345 317 58 8 chr1 232812914 232813034 -9851319 - L2 LINE L2 -2 3270 3145 1501 175 98 96 chr1 232813034 232813543 -9850810 - LTR48B LTR ERV1 -1 643 134 264 237 13 53 chr1 232813541 232813640 -9850713 - MER39 LTR ERV1 -446 96 1 * 2429 96 0 0 chr1 232813659 232813971 -9850382 + AluSx SINE Alu 1 312 0 203 95 48 0 chr1 232814254 232814296 -9850057 + (GTTTG)n Simple_repeat Simple_repeat 1 44 0 1832 175 3 7 chr1 232814559 232814856 -9849497 - AluJo SINE Alu -16 296 1 2067 142 0 7 chr1 232815369 232815672 -9848681 + AluSx SINE Alu 1 301 -11 654 289 0 6 chr1 232815708 232815874 -9848479 - MIR SINE MIR -91 171 7 6638 185 70 35 chr1 232816164 232817846 -9846507 - MER52A LTR ERV1 0 1755 1 1843 184 0 0 chr1 232817934 232818244 -9846109 + AluSx SINE Alu 1 310 -2 1057 191 72 106 chr1 232818259 232818429 -9845924 + MLT1A2 LTR MaLR 1 175 -199 2186 128 0 0 chr1 232818429 232818725 -9845628 + AluSx SINE Alu 1 296 -16 1057 191 72 106 chr1 232818725 232818941 -9845412 + MLT1A2 LTR MaLR 175 374 0 188 297 55 33 chr1 232818949 232819040 -9845313 + L2 LINE L2 3221 3313 0 2215 125 0 0 chr1 232819677 232819988 -9844365 - AluSq SINE Alu -2 311 1 873 118 7 7 chr1 232820341 232820477 -9843876 + L1M3 LINE L1 5648 5783 -400 419 281 78 30 chr1 232820504 232820671 -9843682 + L1MEd LINE L1 458 632 -5487 * 1451 131 20 46 chr1 232820639 232820920 -9843433 + L1MB3 LINE L1 5742 6014 -152 1415 190 15 45 chr1 232820943 232821299 -9843054 - L1MB4 LINE L1 -119 6061 5707 1628 118 75 47 chr1 232821313 232821592 -9842761 - AluJb SINE Alu -25 287 1 596 287 66 6 chr1 232821592 232821773 -9842580 - MIR SINE MIR -58 204 13 226 286 48 12 chr1 232822369 232822453 -9841900 + HAL1 LINE L1 2416 2502 -5 307 367 0 0 chr1 232822904 232823024 -9841329 - L2 LINE L2 -396 2918 2799 * 365 231 0 83 chr1 232823019 232823127 -9841226 - MER5B DNA MER1_type -17 161 63 1518 265 160 7 chr1 232823154 232823693 -9840660 - L2 LINE L2 -508 2806 2186 405 267 200 7 chr1 232823721 232823871 -9840482 + MER5A DNA MER1_type 9 187 -2 352 319 0 30 chr1 232823876 232824011 -9840342 - L2 LINE L2 -1147 2167 2037 193 295 148 25 chr1 232824374 232824496 -9839857 - L2 LINE L2 -226 3046 2910 798 181 0 8 chr1 232824805 232824932 -9839421 + FLAM_C SINE Alu 1 126 -7 1281 133 22 31 chr1 232825815 232826040 -9838313 - Tigger1 DNA MER2_type 0 2418 2196 395 364 67 11 chr1 232826202 232826573 -9837780 + L1ME LINE L1 5383 5774 -347 24 53 0 0 chr1 232827176 232827214 -9837139 + AT_rich Low_complexity Low_complexity 1 38 0 2209 131 0 0 chr1 232827779 232828091 -9836262 - AluSx SINE Alu 0 312 1 28 29 0 0 chr1 232829322 232829357 -9834996 + AT_rich Low_complexity Low_complexity 1 35 0 2266 99 14 0 chr1 232829467 232829759 -9834594 - AluSx SINE Alu -12 300 5 231 185 0 74 chr1 232830432 232830486 -9833867 - MIR SINE MIR -4 258 209 486 131 12 12 chr1 232830490 232830574 -9833779 - L1MB8 LINE L1 -2 6176 6093 597 224 58 95 chr1 232830577 232830872 -9833481 - L1MB4 LINE L1 0 6180 5897 11458 117 34 27 chr1 232830982 232832787 -9831566 - Tigger1 DNA MER2_type -600 1818 1 322 365 26 0 chr1 232832867 232832982 -9831371 + MIR SINE MIR 27 144 -118 233 200 0 67 chr1 232833020 232833095 -9831258 + A-rich Low_complexity Low_complexity 1 70 0 1198 202 252 22 chr1 232833726 232834048 -9830305 + MSTD LTR MaLR 1 396 0 201 361 202 14 chr1 232834284 232834630 -9829723 + L2 LINE L2 2394 2810 -504 2691 95 34 14 chr1 232834630 232834987 -9829366 + THE1B LTR MaLR 1 364 0 261 326 0 0 chr1 232835192 232835287 -9829066 + L2 LINE L2 2965 3059 -254 181 273 0 18 chr1 232835505 232835560 -9828793 + L2 LINE L2 3256 3309 -4 21 0 0 0 chr1 232836229 232836250 -9828103 + AT_rich Low_complexity Low_complexity 1 21 0 250 217 0 0 chr1 232837665 232837711 -9826642 + L2 LINE L2 3209 3254 -18 303 122 0 0 chr1 232839212 232839261 -9825092 + (A)n Simple_repeat Simple_repeat 1 49 0 291 256 295 0 chr1 232839302 232839458 -9824895 + MIR SINE MIR 13 214 -48 249 200 31 0 chr1 232839492 232839557 -9824796 + L1MA8 LINE L1 6221 6287 -4 1968 110 3 35 chr1 232839866 232840156 -9824197 - AluSx SINE Alu -23 289 9 951 166 6 12 chr1 232840325 232840488 -9823865 + L1MB3 LINE L1 6014 6175 -8 1847 147 41 10 chr1 232840503 232840795 -9823558 + AluJb SINE Alu 1 301 -11 1981 223 68 112 chr1 232841797 232841825 -9822528 - L1MEc LINE L1 -1783 4432 4404 1591 193 7 17 chr1 232841825 232842120 -9822233 - AluJo SINE Alu -20 292 1 1981 223 68 112 chr1 232842120 232842549 -9821804 - L1MEc LINE L1 -1811 4404 3958 2264 111 16 0 chr1 232842549 232842855 -9821498 - AluSq SINE Alu -2 311 1 1981 223 68 112 chr1 232842855 232843254 -9821099 - L1MEc LINE L1 -2257 3958 3631 2453 79 7 0 chr1 232843254 232843559 -9820794 + AluSp SINE Alu 1 307 -6 1981 223 68 112 chr1 232843559 232843797 -9820556 - L1MEc LINE L1 -2584 3631 3384 880 171 19 13 chr1 232843826 232843984 -9820369 + LTR40b LTR ERVL 302 460 -2 3259 238 68 43 chr1 232843986 232844886 -9819467 - L1MEc LINE L1 -4004 2392 1516 2355 94 0 0 chr1 232844886 232845184 -9819169 - AluSx SINE Alu -14 298 1 3259 238 68 43 chr1 232845184 232845490 -9818863 - L1MEc LINE L1 -4880 1516 1150 2535 41 0 0 chr1 232845490 232845781 -9818572 + AluY SINE Alu 1 291 -20 3259 238 68 43 chr1 232845781 232845828 -9818525 - L1MEc LINE L1 -5246 1150 1106 287 283 92 50 chr1 232845831 232845951 -9818402 - L1MEc LINE L1 -5549 656 532 548 83 0 12 chr1 232845985 232846069 -9818284 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 2360 115 0 0 chr1 232846099 232846411 -9817942 - AluSx SINE Alu 0 312 1 397 322 40 26 chr1 232846687 232846839 -9817514 - MIR SINE MIR -56 206 53 221 274 32 0 chr1 232846998 232847060 -9817293 - MER5A DNA MER1_type -2 187 124 317 326 87 65 chr1 232847267 232847343 -9817010 - MIR3 SINE MIR -18 190 117 2183 124 0 7 chr1 232847343 232847649 -9816704 + AluSq SINE Alu 1 304 -9 317 326 87 65 chr1 232847649 232847756 -9816597 - MIR3 SINE MIR -91 117 3 293 313 61 0 chr1 232847779 232847878 -9816475 + MIR3 SINE MIR 88 192 -16 326 107 18 0 chr1 232850754 232850810 -9813543 + (TA)n Simple_repeat Simple_repeat 2 58 0 1209 172 116 48 chr1 232850822 232851090 -9813263 - AluJo SINE Alu -26 286 1 250 287 88 52 chr1 232851859 232852081 -9812272 + MIR SINE MIR 33 262 0 1131 158 22 0 chr1 232852182 232852365 -9811988 - L1MB3 LINE L1 -7 6176 5990 2018 121 7 23 chr1 232852373 232852679 -9811674 - AluSx SINE Alu -11 301 1 259 275 210 24 chr1 232853411 232853578 -9810775 - MIR SINE MIR -6 256 59 1220 89 0 24 chr1 232854770 232854975 -9809378 - AluSg/x SINE Alu 0 319 119 301 133 100 0 chr1 232855570 232855630 -9808723 + MIR SINE MIR 79 144 -64 609 214 15 0 chr1 232855664 232855795 -9808558 - MER94 DNA DNA 0 134 2 22 70 0 0 chr1 232857021 232857064 -9807289 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr1 232858040 232858063 -9806290 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr1 232858268 232858293 -9806060 + AT_rich Low_complexity Low_complexity 1 25 0 3983 174 42 73 chr1 232858866 232859797 -9804556 - MER21A LTR ERV1 -17 914 13 26 0 0 0 chr1 232859808 232859834 -9804519 + AT_rich Low_complexity Low_complexity 1 26 0 1252 185 193 25 chr1 232859921 232860283 -9804070 - LTR37A LTR ERV1 0 426 4 243 208 21 0 chr1 232860917 232860965 -9803388 - L2 LINE L2 -6 3307 3259 378 74 0 19 chr1 232861281 232861335 -9803018 + MADE1 DNA Mariner 28 80 0 2472 84 0 3 chr1 232862262 232862613 -9801740 - AluSg SINE Alu 0 350 1 186 394 21 0 chr1 232862622 232862716 -9801637 - MIR SINE MIR -120 142 47 227 91 0 0 chr1 232863816 232863860 -9800493 + LTR66 LTR ERVL 395 438 -172 192 77 0 0 chr1 232863873 232863899 -9800454 + (TA)n Simple_repeat Simple_repeat 2 27 0 249 259 47 0 chr1 232863900 232863985 -9800368 - L1MC4 LINE L1 -1340 6702 6614 2015 127 8 95 chr1 232865198 232865567 -9798786 + MER1B DNA MER1_type 1 337 0 2171 123 7 3 chr1 232865950 232866251 -9798102 - AluSx SINE Alu -10 302 1 823 109 22 51 chr1 232867150 232867288 -9797065 + FRAM SINE Alu 36 169 -7 27 0 0 0 chr1 232867461 232867488 -9796865 + AT_rich Low_complexity Low_complexity 1 27 0 642 240 101 35 chr1 232867666 232867818 -9796535 + L1MC4a LINE L1 5717 5720 -442 2177 128 3 0 chr1 232867818 232868123 -9796230 - AluSp SINE Alu -2 311 6 642 240 101 35 chr1 232868123 232868248 -9796105 + L1MC4a LINE L1 5720 5835 -327 1362 43 0 0 chr1 232869021 232869183 -9795170 - L1PA4 LINE L1 0 6155 5994 24 53 0 0 chr1 232869228 232869266 -9795087 + AT_rich Low_complexity Low_complexity 1 38 0 958 209 59 0 chr1 232869320 232869507 -9794846 + MER3 DNA MER1_type 2 199 -10 2131 134 23 0 chr1 232869538 232869843 -9794510 + AluSq SINE Alu 1 312 -1 2149 130 0 7 chr1 232870700 232871001 -9793352 - AluSx SINE Alu -13 299 1 31 0 0 0 chr1 232871106 232871137 -9793216 + AT_rich Low_complexity Low_complexity 1 31 0 1693 171 27 7 chr1 232871814 232872106 -9792247 + AluJb SINE Alu 1 298 -14 287 179 0 13 chr1 232872478 232872556 -9791797 + GA-rich Low_complexity Low_complexity 3 79 0 228 304 25 0 chr1 232872882 232872961 -9791392 + MIR SINE MIR 182 262 0 2383 80 3 7 chr1 232873037 232873337 -9791016 - AluSx SINE Alu -13 299 1 4327 187 29 13 chr1 232873337 232874435 -9789918 - L1MC2 LINE L1 -243 6101 4992 2438 87 3 3 chr1 232874570 232874879 -9789474 - AluSx SINE Alu -3 309 1 235 250 198 26 chr1 232875729 232875845 -9788508 + MIR3 SINE MIR 11 146 -62 525 164 301 20 chr1 232876077 232876223 -9788130 - MER5A DNA MER1_type -1 188 2 1740 139 46 17 chr1 232876254 232876556 -9787797 + AluJb SINE Alu 1 311 -1 756 218 34 50 chr1 232876611 232876790 -9787563 + MER45A DNA AcHobo 1 176 -2 349 200 17 7 chr1 232877037 232877128 -9787225 - MLT1A2-int LTR MaLR -1277 94 4 673 150 75 0 chr1 232877131 232877251 -9787102 - MLT1A2 LTR MaLR 0 374 246 1413 200 0 4 chr1 232877255 232877505 -9786848 - AluJo SINE Alu -50 262 14 2167 145 0 0 chr1 232877701 232878012 -9786341 + AluSx SINE Alu 1 311 -1 470 217 5 157 chr1 232878601 232878732 -9785621 - MER91B DNA MER1_type 0 190 97 897 152 8 0 chr1 232878732 232878864 -9785489 - FLAM_C SINE Alu 0 133 1 470 217 5 157 chr1 232878864 232878930 -9785423 - MER91B DNA MER1_type -93 97 23 2174 126 0 3 chr1 232879349 232879650 -9784703 - AluSq SINE Alu -13 300 1 808 166 7 0 chr1 232879660 232879799 -9784554 - FLAM_C SINE Alu -3 140 1 1429 151 4 0 chr1 232880525 232880750 -9783603 + AluJo SINE Alu 82 307 -5 749 110 7 0 chr1 232880750 232880895 -9783458 + (GGAA)n Simple_repeat Simple_repeat 1 146 0 325 243 0 14 chr1 232880900 232880970 -9783383 + MER21B LTR ERV1 22 90 -773 1668 216 111 38 chr1 232880992 232881663 -9782690 + MER21B LTR ERV1 19 809 -54 26 0 0 0 chr1 232881927 232881953 -9782400 + AT_rich Low_complexity Low_complexity 1 26 0 743 199 8 0 chr1 232882468 232882599 -9781754 - FRAM SINE Alu -23 153 22 254 273 0 45 chr1 232882610 232882698 -9781655 + MER94 DNA DNA 1 84 -50 2550 72 0 0 chr1 232882979 232883285 -9781068 + AluSx SINE Alu 1 306 -6 698 291 43 8 chr1 232883292 232883526 -9780827 - L1MCa LINE L1 -2590 3836 3595 880 171 19 13 chr1 232883555 232883713 -9780640 + LTR40b LTR ERVL 302 460 -2 3089 230 71 7 chr1 232883715 232884614 -9779739 - L1MCa LINE L1 -4004 2603 1484 2368 94 0 0 chr1 232884616 232884914 -9779439 - AluSx SINE Alu -14 298 1 397 322 40 26 chr1 232885190 232885342 -9779011 - MIR SINE MIR -56 206 53 218 248 352 0 chr1 232885501 232885626 -9778727 - MER5A DNA MER1_type -2 187 19 2309 114 0 9 chr1 232885846 232886162 -9778191 + AluSq SINE Alu 1 313 0 201 327 150 18 chr1 232886172 232886285 -9778068 - MIR3 SINE MIR -78 130 3 293 313 61 0 chr1 232886308 232886407 -9777946 + MIR3 SINE MIR 88 192 -16 297 218 0 0 chr1 232887164 232887219 -9777134 - FLAM SINE Alu -4 129 75 1907 164 3 3 chr1 232887663 232887987 -9776366 + AluJo SINE Alu 1 312 0 465 345 28 69 chr1 232888294 232888656 -9775697 + L2 LINE L2 2926 3272 0 183 325 104 13 chr1 232889001 232889078 -9775275 + MIR SINE MIR 1 84 -178 192 259 93 0 chr1 232889111 232889165 -9775188 - L2 LINE L2 -20 3293 3235 188 333 14 0 chr1 232889165 232889237 -9775116 + MIR SINE MIR 190 262 0 2232 123 0 3 chr1 232890231 232890531 -9773822 + AluSx SINE Alu 1 299 -13 309 267 33 0 chr1 232890563 232890653 -9773700 + L1MC4a LINE L1 5816 5908 -1900 344 266 130 19 chr1 232891096 232891250 -9773103 + L3 LINE CR1 898 1068 -509 247 263 105 21 chr1 232891528 232891623 -9772730 - L1MC/D LINE L1 -2153 5655 5553 384 270 69 40 chr1 232891940 232891998 -9772355 + MIR SINE MIR 74 129 -133 1245 215 47 27 chr1 232891998 232892296 -9772057 - AluJb SINE Alu -8 304 1 384 270 69 40 chr1 232892296 232892411 -9771942 + MIR SINE MIR 129 252 -10 227 210 48 65 chr1 232892500 232892562 -9771791 + L3 LINE CR1 1285 1345 -232 508 206 125 7 chr1 232892591 232892727 -9771626 - MER69A DNA AcHobo -22 155 4 35 0 0 0 chr1 232892830 232892865 -9771488 + AT_rich Low_complexity Low_complexity 1 35 0 228 244 0 0 chr1 232892889 232892930 -9771423 + L3 LINE CR1 1501 1541 -36 659 259 58 24 chr1 232893490 232893695 -9770658 + MIR SINE MIR 47 258 -4 21 0 0 0 chr1 232893832 232893853 -9770500 + AT_rich Low_complexity Low_complexity 1 21 0 3110 239 65 18 chr1 232894091 232894987 -9769366 - L1ME1 LINE L1 -5 6230 5290 1028 209 17 52 chr1 232894986 232895273 -9769080 - L1ME1 LINE L1 -2362 3853 3577 * 2126 212 96 22 chr1 232895270 232895865 -9768488 - L1M4 LINE L1 -1815 4331 3693 1777 250 91 7 chr1 232896005 232896609 -9767744 - L1ME1 LINE L1 -2793 3422 2768 986 220 52 43 chr1 232896610 232896915 -9767438 - LTR40c LTR ERVL -157 308 1 2265 209 54 47 chr1 232896915 232897298 -9767055 - L1ME1 LINE L1 -5185 1211 819 2206 112 3 0 chr1 232897298 232897593 -9766760 - AluSx SINE Alu -16 296 1 2265 209 54 47 chr1 232897593 232897875 -9766478 - L1ME1 LINE L1 -5577 819 541 3442 259 73 30 chr1 232897966 232898080 -9766273 - L1MEc LINE L1 -5089 1307 1199 2343 79 10 0 chr1 232898080 232898385 -9765968 - AluSq SINE Alu -5 308 1 3442 259 73 30 chr1 232898385 232899472 -9764881 - L1MEc LINE L1 -5197 1199 54 2309 106 0 28 chr1 232899552 232899874 -9764479 - AluSq SINE Alu 0 313 1 323 275 110 9 chr1 232900003 232900112 -9764241 - L2 LINE L2 -5 3308 3189 2145 93 11 0 chr1 232900137 232900440 -9763913 + AluSp SINE Alu 1 306 0 189 107 0 0 chr1 232901066 232901094 -9763259 + (TG)n Simple_repeat Simple_repeat 1 28 0 550 101 30 35 chr1 232901094 232901263 -9763090 + GA-rich Low_complexity Low_complexity 2 169 0 301 115 34 61 chr1 232901266 232901414 -9762939 + HERV17 LTR ERV1 704 847 -7779 182 120 0 76 chr1 232901419 232901511 -9762842 + (GA)n Simple_repeat Simple_repeat 2 86 0 312 238 74 165 chr1 232901592 232902118 -9762235 - L1M2 LINE L1 -5872 977 542 28 61 0 0 chr1 232902268 232902317 -9762036 + GC_rich Low_complexity Low_complexity 1 49 0 326 107 18 0 chr1 232904762 232904818 -9759535 + (TA)n Simple_repeat Simple_repeat 1 57 0 1209 172 116 48 chr1 232904830 232905098 -9759255 - AluJo SINE Alu -26 286 1 250 287 88 52 chr1 232905867 232906089 -9758264 + MIR SINE MIR 33 262 0 1131 158 22 0 chr1 232906190 232906373 -9757980 - L1MB3 LINE L1 -7 6176 5990 2107 108 3 26 chr1 232906381 232906687 -9757666 - AluSg SINE Alu -11 299 1 2014 148 0 7 chr1 232906805 232907103 -9757250 + AluJo SINE Alu 1 296 -16 210 71 0 0 chr1 232908615 232908643 -9755710 + (CA)n Simple_repeat Simple_repeat 1 28 0 289 359 83 24 chr1 232908923 232909346 -9755007 + L2 LINE L2 2374 2821 -493 2393 98 0 9 chr1 232909634 232909950 -9754403 - AluSp SINE Alu 0 313 1 1585 174 4 11 chr1 232910210 232910485 -9753868 + AluJo SINE Alu 1 273 -39 1904 136 7 36 chr1 232910512 232910820 -9753533 + AluSx SINE Alu 1 299 -13 1897 126 7 42 chr1 232911452 232911761 -9752592 + AluSx SINE Alu 1 298 -14 234 240 40 0 chr1 232911993 232912068 -9752285 + MER116 DNA Mariner 3 80 0 2539 54 7 0 chr1 232912094 232912388 -9751965 - AluSc SINE Alu -13 296 1 1325 148 5 0 chr1 232912564 232912760 -9751593 + AluJb SINE Alu 94 290 -22 2012 120 13 54 chr1 232913182 232913499 -9750854 - AluSx SINE Alu -8 304 1 259 275 210 24 chr1 232914231 232914398 -9749955 - MIR SINE MIR -6 256 59 1220 89 0 24 chr1 232915590 232915795 -9748558 - AluSg/x SINE Alu 0 317 117 301 133 100 0 chr1 232916390 232916450 -9747903 + MIR SINE MIR 79 144 -64 609 214 15 0 chr1 232916484 232916615 -9747738 - MER94 DNA DNA 0 134 2 22 70 0 0 chr1 232917841 232917884 -9746469 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr1 232918860 232918883 -9745470 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr1 232919088 232919113 -9745240 + AT_rich Low_complexity Low_complexity 1 25 0 3999 175 42 74 chr1 232919686 232920618 -9743735 - MER21A LTR ERV1 -17 914 13 26 0 0 0 chr1 232920629 232920655 -9743698 + AT_rich Low_complexity Low_complexity 1 26 0 1184 182 193 25 chr1 232920742 232921104 -9743249 - LTR37A LTR ERV1 0 426 4 228 196 22 0 chr1 232921738 232921784 -9742569 - L2 LINE L2 -6 3307 3261 374 74 0 19 chr1 232922102 232922156 -9742197 + MADE1 DNA Mariner 28 80 0 2489 84 0 3 chr1 232923083 232923434 -9740919 - AluSg SINE Alu 0 350 1 309 244 0 0 chr1 232924647 232924737 -9739616 - L1MC4 LINE L1 -1339 6703 6614 339 164 0 0 chr1 232924744 232924805 -9739548 + (TA)n Simple_repeat Simple_repeat 1 61 0 2090 106 8 95 chr1 232926011 232926380 -9737973 + MER1B DNA MER1_type 1 337 0 2188 123 7 3 chr1 232926763 232927064 -9737289 - AluSx SINE Alu -10 302 1 806 92 28 0 chr1 232927963 232928072 -9736281 + FRAM SINE Alu 36 147 -29 614 246 62 43 chr1 232928478 232928630 -9735723 + L1MC4a LINE L1 5717 5714 -448 2218 124 3 0 chr1 232928630 232928936 -9735417 - AluSp SINE Alu -1 312 6 614 246 62 43 chr1 232928936 232929062 -9735291 + L1MC4a LINE L1 5713 5835 -327 1198 68 0 6 chr1 232930381 232930544 -9733809 - L1PA4 LINE L1 0 6155 5994 24 53 0 0 chr1 232930588 232930626 -9733727 + AT_rich Low_complexity Low_complexity 1 38 0 948 209 59 0 chr1 232930680 232930867 -9733486 + MER3 DNA MER1_type 2 199 -10 2146 134 23 0 chr1 232930898 232931203 -9733150 + AluSq SINE Alu 1 312 -1 2282 125 0 0 chr1 232932060 232932363 -9731990 - AluSx SINE Alu -9 303 1 1937 140 24 10 chr1 232932389 232932682 -9731671 + AluJo SINE Alu 1 297 -15 2045 115 10 33 chr1 232934737 232935041 -9729312 + AluSx SINE Alu 1 297 -15 253 265 0 29 chr1 232935796 232935864 -9728489 + CT-rich Low_complexity Low_complexity 2 67 0 2452 64 3 0 chr1 232936249 232936544 -9727809 - AluY SINE Alu 0 311 16 25 31 0 0 chr1 232937267 232937299 -9727054 + AT_rich Low_complexity Low_complexity 1 32 0 2533 87 0 0 chr1 232937588 232937898 -9726455 + AluSg SINE Alu 1 310 0 2021 106 33 4 chr1 232938685 232938992 -9725361 - AluSx SINE Alu 0 315 1 1108 211 55 68 chr1 232939185 232939235 -9725118 - LTR16B LTR ERVL 0 464 415 1483 207 8 75 chr1 232939235 232939636 -9724717 - MLT1A2 LTR MaLR 0 374 1 1108 211 55 68 chr1 232939636 232940055 -9724298 - LTR16B LTR ERVL -49 415 1 210 71 0 0 chr1 232940067 232940095 -9724258 + (T)n Simple_repeat Simple_repeat 1 28 0 2233 107 3 7 chr1 232940580 232940879 -9723474 + AluSx SINE Alu 1 298 -14 265 282 0 0 chr1 232941960 232942031 -9722322 - L2 LINE L2 -9 3263 3193 180 111 0 0 chr1 232942407 232942434 -9721919 + (A)n Simple_repeat Simple_repeat 1 27 0 2532 63 0 0 chr1 232943379 232943678 -9720675 - AluY SINE Alu -12 299 1 856 185 0 13 chr1 232943982 232944139 -9720214 + FRAM SINE Alu 1 155 -21 21 36 0 0 chr1 232944648 232944676 -9719677 + AT_rich Low_complexity Low_complexity 1 28 0 2025 82 0 50 chr1 232945397 232945715 -9718638 + AluY SINE Alu 16 319 0 357 62 0 0 chr1 232946745 232946793 -9717560 + (TG)n Simple_repeat Simple_repeat 1 48 0 289 234 16 0 chr1 232947122 232947186 -9717167 + L2 LINE L2 3207 3271 -1 523 304 6 17 chr1 232947549 232947730 -9716623 - MIR3 SINE MIR -14 194 16 389 300 0 0 chr1 232949859 232949949 -9714404 + L2 LINE L2 3224 3313 0 215 163 163 0 chr1 232950018 232950067 -9714286 - L2 LINE L2 0 3272 3216 21 0 0 0 chr1 232950076 232950097 -9714256 + AT_rich Low_complexity Low_complexity 1 21 0 584 274 49 10 chr1 232950480 232950684 -9713669 - MIR SINE MIR -10 252 41 1859 145 0 32 chr1 232951594 232951904 -9712449 - AluJo SINE Alu -12 300 1 1961 158 0 7 chr1 232952424 232952722 -9711631 + AluJo SINE Alu 1 296 -16 210 71 0 0 chr1 232954234 232954262 -9710091 + (CA)n Simple_repeat Simple_repeat 1 28 0 187 369 80 21 chr1 232954541 232954964 -9709389 + L2 LINE L2 2374 2821 -493 2410 98 0 9 chr1 232955252 232955568 -9708785 - AluSp SINE Alu 0 313 1 1600 174 4 11 chr1 232955828 232956103 -9708250 + AluJo SINE Alu 1 273 -39 1929 136 7 36 chr1 232956130 232956438 -9707915 + AluSx SINE Alu 1 299 -13 2302 102 0 0 chr1 232957070 232957375 -9706978 + AluSx SINE Alu 1 305 -7 437 193 79 61 chr1 232958065 232958179 -9706174 - MIR SINE MIR -72 190 75 195 240 107 13 chr1 232958839 232958914 -9705439 + MIR3 SINE MIR 105 186 -22 23 0 0 0 chr1 232959619 232959642 -9704711 + AT_rich Low_complexity Low_complexity 1 23 0 1283 235 81 66 chr1 232960198 232960466 -9703887 - MLT1C LTR MaLR -5 462 183 2362 109 0 0 chr1 232960466 232960777 -9703576 - AluSx SINE Alu -1 311 1 1283 235 81 66 chr1 232960777 232960963 -9703390 - MLT1C LTR MaLR -284 183 1 180 0 0 0 chr1 232965333 232965353 -9699000 + (TA)n Simple_repeat Simple_repeat 2 21 0 240 35 0 0 chr1 232966031 232966060 -9698293 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1986 122 4 0 chr1 232966064 232966343 -9698010 - AluSx SINE Alu -32 280 1 1670 291 107 46 chr1 232967907 232968154 -9696199 + L2 LINE L2 1571 1801 -1512 2512 71 0 0 chr1 232968154 232968448 -9695905 - AluSx SINE Alu -18 294 1 1670 291 107 46 chr1 232968448 232968562 -9695791 + L2 LINE L2 1801 1907 -1406 2174 94 0 0 chr1 232968562 232968838 -9695515 - AluSg SINE Alu -7 303 28 1670 291 107 46 chr1 232968838 232969074 -9695279 + L2 LINE L2 1907 2127 -1186 1801 168 20 3 chr1 232969074 232969372 -9694981 - AluJo SINE Alu -7 305 3 1670 291 107 46 chr1 232969372 232970404 -9693949 + L2 LINE L2 2127 3303 -10 645 178 47 16 chr1 232970458 232970587 -9693766 + FLAM_A SINE Alu 1 133 0 669 292 46 0 chr1 232971774 232971990 -9692363 + MIR SINE MIR 14 239 -23 2580 35 0 0 chr1 232973187 232973475 -9690878 + AluY SINE Alu 1 288 -23 195 42 0 0 chr1 232973478 232973502 -9690851 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 29 28 0 0 chr1 232973858 232973894 -9690459 + AT_rich Low_complexity Low_complexity 1 36 0 2539 70 0 10 chr1 232973916 232974230 -9690123 + AluY SINE Alu 1 311 0 1746 182 7 3 chr1 232974460 232974756 -9689597 + AluJo SINE Alu 1 297 -15 818 194 69 65 chr1 232974871 232975087 -9689266 - L1PB4 LINE L1 0 6156 5940 1875 144 0 14 chr1 232977042 232977370 -9686983 + AluJb SINE Alu 1 324 0 2143 133 3 7 chr1 232978334 232978643 -9685710 + AluJo SINE Alu 1 308 -4 24 0 0 0 chr1 232978735 232978759 -9685594 + AT_rich Low_complexity Low_complexity 1 24 0 2056 133 0 19 chr1 232980061 232980377 -9683976 - AluSx SINE Alu 0 312 3 1520 232 67 28 chr1 232980667 232981128 -9683225 - Charlie4a DNA MER1_type 0 508 30 259 289 0 36 chr1 232981311 232981394 -9682959 + C-rich Low_complexity Low_complexity 1 80 0 1809 137 6 67 chr1 232984717 232984907 -9679446 - AluSx SINE Alu -4 308 145 2426 87 7 0 chr1 232984907 232985216 -9679137 - AluSp SINE Alu 0 313 3 1809 137 6 67 chr1 232985216 232985353 -9679000 - AluSx SINE Alu -167 145 1 461 132 40 13 chr1 232985353 232985429 -9678924 - MLT1C LTR MaLR -386 81 4 615 106 0 48 chr1 232985731 232985835 -9678518 + AluSg/x SINE Alu 198 296 -16 205 216 0 0 chr1 232986029 232986066 -9678287 + T-rich Low_complexity Low_complexity 1 37 0 1119 73 20 0 chr1 232986072 232986222 -9678131 - L1PB1 LINE L1 -4 6147 5995 278 294 17 67 chr1 232986799 232986918 -9677435 + L2 LINE L2 3149 3261 -11 202 207 86 112 chr1 232986982 232987098 -9677255 - MIR SINE MIR -70 192 80 21 36 0 0 chr1 232988833 232988861 -9675492 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr1 232988880 232988910 -9675443 + AT_rich Low_complexity Low_complexity 1 30 0 230 242 22 22 chr1 232989592 232989683 -9674670 + (TGAA)n Simple_repeat Simple_repeat 3 93 0 2162 100 4 0 chr1 232989783 232990107 -9674246 + AluSx SINE Alu 1 325 0 1728 174 20 13 chr1 232991225 232991529 -9672824 - AluJb SINE Alu -6 306 1 266 257 135 0 chr1 232992998 232993072 -9671281 - MIR SINE MIR -84 124 41 398 311 74 20 chr1 232993422 232993666 -9670687 - L2 LINE L2 -228 3085 2829 48 53 0 0 chr1 232994238 232994314 -9670039 + AT_rich Low_complexity Low_complexity 1 76 0 576 202 0 9 chr1 232994749 232994863 -9669490 + AluSg/x SINE Alu 194 306 -4 3107 207 38 14 chr1 232995074 232995701 -9668652 - MER82 DNA MER2_type -11 642 1 914 253 144 10 chr1 232995715 232996114 -9668239 - L1ME3A LINE L1 -214 5956 5482 192 152 0 0 chr1 232996259 232996292 -9668061 + (TG)n Simple_repeat Simple_repeat 2 34 0 1061 202 56 5 chr1 232996692 232996905 -9667448 + MER58A DNA MER1_type 1 224 0 428 253 56 82 chr1 232997358 232997663 -9666690 - L1ME4a LINE L1 -18 6103 5807 259 289 0 36 chr1 233000472 233000555 -9663798 + C-rich Low_complexity Low_complexity 1 80 0 2184 108 0 23 chr1 233004969 233005276 -9659077 - AluSc SINE Alu -9 300 1 2107 129 0 3 chr1 233005276 233005608 -9658745 - AluSq SINE Alu 0 313 1 2287 102 7 0 chr1 233006651 233006945 -9657408 + AluSq SINE Alu 1 296 -17 461 152 25 0 chr1 233007034 233007113 -9657240 - L1MB8 LINE L1 -1 6177 6097 264 59 0 0 chr1 233008117 233008151 -9656202 + (TG)n Simple_repeat Simple_repeat 1 34 0 2154 110 10 10 chr1 233011524 233011832 -9652521 + AluSq SINE Alu 1 308 -5 2370 99 0 3 chr1 233012072 233012375 -9651978 + AluSc SINE Alu 1 302 -7 1960 178 89 0 chr1 233013157 233013527 -9650826 - MER57A LTR ERV1 0 403 1 644 215 64 50 chr1 233013635 233013854 -9650499 + Charlie2a DNA MER1_type 461 682 -2180 1198 214 136 39 chr1 233013901 233013949 -9650404 + Charlie2a DNA MER1_type 792 834 -2028 1786 163 3 23 chr1 233013949 233014250 -9650103 + AluJb SINE Alu 1 295 -17 1198 214 136 39 chr1 233014250 233014641 -9649712 + Charlie2a DNA MER1_type 834 1274 -1588 1159 103 0 0 chr1 233020230 233020376 -9643977 - AluSq/x SINE Alu -167 146 1 2055 134 6 6 chr1 233020385 233020698 -9643655 - AluSq SINE Alu 0 313 1 226 261 17 61 chr1 233020768 233020883 -9643470 + L1MC/D LINE L1 5765 5874 -1934 2173 104 0 7 chr1 233021000 233021288 -9643065 + AluSx SINE Alu 1 286 -26 216 302 56 50 chr1 233021663 233021842 -9642511 + MIR SINE MIR 11 190 -72 2395 92 0 10 chr1 233021901 233022207 -9642146 + AluSc SINE Alu 1 303 -6 1260 157 9 14 chr1 233022214 233022431 -9641922 + AluJb SINE Alu 82 297 -15 459 221 32 11 chr1 233023085 233023180 -9641173 - MIR SINE MIR -146 116 20 277 324 27 0 chr1 233023876 233023950 -9640403 - L2 LINE L2 -1 3271 3196 24 0 0 29 chr1 233024756 233024771 -9639582 + AT_rich Low_complexity Low_complexity 1 15 -19 2268 101 14 0 chr1 233024771 233025067 -9639286 + AluSx SINE Alu 1 300 -12 24 0 0 29 chr1 233025067 233025086 -9639267 + AT_rich Low_complexity Low_complexity 15 34 0 744 134 0 50 chr1 233025185 233025304 -9639049 - FRAM SINE Alu -16 160 48 618 175 8 25 chr1 233025811 233025931 -9638422 + AluY SINE Alu 153 270 -41 192 158 79 0 chr1 233026454 233026492 -9637861 + MIR SINE MIR 124 164 -98 192 401 56 0 chr1 233027056 233027198 -9637155 - L2 LINE L2 -4 3309 3160 733 189 95 45 chr1 233027284 233027505 -9636848 - MLT1A1 LTR MaLR 0 365 134 595 186 0 24 chr1 233027505 233027683 -9636670 + MLT1A1 LTR MaLR 1 235 -130 357 231 52 22 chr1 233027829 233027963 -9636390 - L1ME4a LINE L1 -278 5843 5706 263 333 61 5 chr1 233028182 233028380 -9635973 - L1MC4a LINE L1 -1889 5919 5711 355 291 48 63 chr1 233028727 233028790 -9635563 - MIR SINE MIR -6 256 194 1740 147 0 56 chr1 233028790 233029096 -9635257 - AluJo SINE Alu -23 289 1 355 291 48 63 chr1 233029096 233029238 -9635115 - MIR SINE MIR -68 194 54 4151 137 33 28 chr1 233029866 233030481 -9633872 - L1MB3 LINE L1 -1 6182 5561 2059 127 0 0 chr1 233030481 233030772 -9633581 - AluSx SINE Alu -21 291 1 4151 137 33 28 chr1 233030772 233030878 -9633475 - L1MB3 LINE L1 -622 5561 5457 926 236 33 14 chr1 233031065 233031277 -9633076 - MER58A DNA MER1_type 0 224 9 797 217 131 19 chr1 233033443 233033710 -9630643 - MER46C DNA MER2_type -41 297 1 449 257 123 28 chr1 233033901 233034080 -9630273 + MIR SINE MIR 66 261 -1 2338 113 57 28 chr1 233034280 233034634 -9629719 - THE1B LTR MaLR 0 364 1 1055 234 0 14 chr1 233034998 233035207 -9629146 + MER6B DNA MER2_type 1 206 -4 1387 153 39 9 chr1 233035243 233035472 -9628881 - AluSx SINE Alu -76 236 1 21 82 0 0 chr1 233036331 233036380 -9627973 + AT_rich Low_complexity Low_complexity 1 49 0 294 253 127 0 chr1 233036635 233036714 -9627639 - L1MC4a LINE L1 -2107 5701 5613 903 153 18 6 chr1 233036815 233036978 -9627375 + AluSg/x SINE Alu 144 308 -4 1216 213 128 44 chr1 233036989 233037356 -9626997 + MLT1C LTR MaLR 70 467 0 2654 106 29 114 chr1 233037868 233038434 -9625919 - MER4E LTR ERV1 0 779 90 2370 68 3 7 chr1 233038434 233038728 -9625625 - AluSx SINE Alu -19 293 1 2654 106 29 114 chr1 233038728 233038791 -9625562 - MER4E LTR ERV1 -689 90 23 267 250 66 81 chr1 233039187 233039271 -9625082 - MIR SINE MIR -24 238 155 3540 107 48 94 chr1 233039271 233039311 -9625042 + MER4A LTR ERV1 1 41 -559 2054 118 3 10 chr1 233039311 233039599 -9624754 + AluSx SINE Alu 19 304 -8 3540 107 48 94 chr1 233039599 233040187 -9624166 + MER4A LTR ERV1 41 600 0 267 250 66 81 chr1 233040187 233040238 -9624115 - MIR SINE MIR -107 155 105 2293 119 0 0 chr1 233040247 233040557 -9623796 + AluSg SINE Alu 1 310 0 203 95 48 0 chr1 233040840 233040882 -9623471 + (GTTTG)n Simple_repeat Simple_repeat 1 44 0 1878 165 3 7 chr1 233041145 233041442 -9622911 - AluJo SINE Alu -16 296 1 190 185 93 37 chr1 233041816 233041870 -9622483 - L2 LINE L2 0 3313 3257 2058 142 0 7 chr1 233041955 233042258 -9622095 + AluSx SINE Alu 1 301 -11 705 289 0 6 chr1 233042294 233042460 -9621893 - MIR SINE MIR -91 171 7 7148 189 99 55 chr1 233042750 233044432 -9619921 - MER52A LTR ERV1 0 1755 1 1843 184 0 0 chr1 233044520 233044830 -9619523 + AluSx SINE Alu 1 310 -2 1057 191 72 106 chr1 233044845 233045015 -9619338 + MLT1A2 LTR MaLR 1 175 -199 2214 125 0 0 chr1 233045015 233045311 -9619042 + AluSx SINE Alu 1 296 -16 1057 191 72 106 chr1 233045311 233045527 -9618826 + MLT1A2 LTR MaLR 175 374 0 188 297 55 33 chr1 233045535 233045626 -9618727 + L2 LINE L2 3221 3313 0 2142 122 0 0 chr1 233046263 233046558 -9617795 - AluSq SINE Alu -2 311 17 1562 191 7 7 chr1 233046857 233047150 -9617203 + AluJb SINE Alu 13 305 -7 325 308 17 0 chr1 233047537 233047654 -9616699 - HAL1b LINE L1 -732 616 498 625 180 123 33 chr1 233047656 233047778 -9616575 - AluJo SINE Alu -178 134 2 275 136 242 0 chr1 233047861 233047927 -9616426 - L1MB7 LINE L1 0 6184 6103 240 89 18 18 chr1 233047944 233048000 -9616353 - L1MB4 LINE L1 -1 6179 6124 761 152 0 0 chr1 233048001 233048113 -9616240 - FLAM_A SINE Alu -7 135 24 1829 137 48 19 chr1 233048114 233048428 -9615925 - L1MB4 LINE L1 -49 6131 5809 3177 227 92 61 chr1 233048444 233049555 -9614798 - L1M4 LINE L1 -3540 2842 1640 2135 131 7 0 chr1 233049555 233049860 -9614493 - AluSx SINE Alu -5 307 1 3177 227 92 61 chr1 233049860 233050282 -9614071 - L1M4 LINE L1 -4742 1640 1232 2148 138 41 22 chr1 233050282 233050644 -9613709 + THE1C LTR MaLR 1 369 -6 1766 243 37 65 chr1 233050644 233051341 -9613012 - L1M4 LINE L1 -5039 1241 564 953 222 63 57 chr1 233051433 233051683 -9612670 - L1M4 LINE L1 -6019 365 111 2534 149 50 24 chr1 233051683 233052106 -9612247 - Tigger2a DNA MER2_type 0 434 1 953 222 63 57 chr1 233052106 233052189 -9612164 - L1M4 LINE L1 -6273 111 30 347 314 29 95 chr1 233052199 233052505 -9611848 - HAL1b LINE L1 -895 453 168 2736 16 0 0 chr1 233052602 233052905 -9611448 + AluYa5 SINE Alu 1 303 -8 2151 90 0 7 chr1 233053167 233053468 -9610885 + AluSc SINE Alu 5 303 0 456 188 21 10 chr1 233053498 233053594 -9610759 - HsTC2 DNA Tc2 -1772 126 30 318 278 43 17 chr1 233053844 233053959 -9610394 - MLT1J LTR MaLR -6 505 388 2142 113 3 10 chr1 233054836 233055146 -9609207 + AluSx SINE Alu 1 308 -4 384 317 58 8 chr1 233055855 233055975 -9608378 - L2 LINE L2 -2 3270 3145 1569 169 100 97 chr1 233055975 233056483 -9607870 - LTR48B LTR ERV1 -1 643 134 265 237 13 53 chr1 233056481 233056580 -9607773 - MER39 LTR ERV1 -446 96 1 * 2176 101 0 17 chr1 233056599 233056897 -9607456 + AluSx SINE Alu 1 293 -19 1048 164 0 11 chr1 233057515 233057692 -9606661 + AluJb SINE Alu 134 308 -4 306 295 132 8 chr1 233057726 233057855 -9606498 + MIR SINE MIR 59 203 -59 221 197 131 16 chr1 233057853 233057914 -9606439 + MIR3 SINE MIR 100 167 -41 * 299 187 0 53 chr1 233058556 233058631 -9605722 - MER113 DNA MER1_type? -304 217 147 860 238 11 6 chr1 233058631 233058812 -9605541 - AluJo SINE Alu -10 302 121 2088 119 13 7 chr1 233059845 233060155 -9604198 + AluSx SINE Alu 1 312 0 263 245 101 51 chr1 233060668 233060852 -9603501 - MLT1J1 LTR MaLR 0 446 303 * 1370 215 92 52 chr1 233060850 233061315 -9603038 - Charlie2a DNA MER1_type -1039 1823 1340 321 207 37 12 chr1 233062326 233062408 -9601945 - HsTC2 DNA Tc2 -1812 86 3 787 191 0 8 chr1 233062584 233062715 -9601638 - FRAM SINE Alu -11 165 36 22 0 0 0 chr1 233062720 233062742 -9601611 + AT_rich Low_complexity Low_complexity 1 22 0 854 217 6 12 chr1 233064352 233064513 -9599840 + FAM SINE Alu 5 164 -11 696 215 84 21 chr1 233064880 233065071 -9599282 - MIR SINE MIR 0 262 60 876 170 29 23 chr1 233065561 233065732 -9598621 + L1MC2 LINE L1 6055 6226 -118 25 0 0 0 chr1 233065955 233065980 -9598373 + AT_rich Low_complexity Low_complexity 1 25 0 187 280 20 0 chr1 233066364 233066414 -9597939 - L2 LINE L2 -215 3057 3007 2646 184 41 8 chr1 233066462 233066977 -9597376 - L1MC2 LINE L1 -112 6232 5701 2744 186 43 13 chr1 233068020 233068463 -9595890 - L1MC2 LINE L1 -630 5714 5286 1547 248 95 7 chr1 233068463 233068883 -9595470 - MSTB2 LTR MaLR 0 457 1 2744 186 43 13 chr1 233068883 233069537 -9594816 - L1MC2 LINE L1 -1058 5286 4593 25 0 0 0 chr1 233069820 233069845 -9594508 + AT_rich Low_complexity Low_complexity 1 25 0 1353 269 82 12 chr1 233070224 233070651 -9593702 + L2 LINE L2 351 807 -2507 433 138 60 35 chr1 233070657 233070773 -9593580 + Charlie5 DNA MER1_type 5 123 -2489 2096 154 3 0 chr1 233070879 233071184 -9593169 - AluJo SINE Alu -6 306 1 1948 153 39 31 chr1 233071557 233071944 -9592409 + MLT1B LTR MaLR 1 390 0 399 283 50 0 chr1 233071965 233072124 -9592229 - L1MC5 LINE L1 -71 7890 7724 24 24 0 24 chr1 233072559 233072578 -9591775 + AT_rich Low_complexity Low_complexity 1 19 -22 2326 77 0 0 chr1 233072578 233072865 -9591488 - AluY SINE Alu -24 287 1 24 24 0 24 chr1 233072865 233072887 -9591466 + AT_rich Low_complexity Low_complexity 19 41 0 246 233 0 0 chr1 233072992 233073052 -9591301 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 21 0 0 0 chr1 233075000 233075021 -9589332 + AT_rich Low_complexity Low_complexity 1 21 0 246 247 233 40 chr1 233075605 233075755 -9588598 - MIR SINE MIR -69 193 15 188 336 86 17 chr1 233075937 233076053 -9588300 - MIR3 SINE MIR -74 134 11 912 222 107 8 chr1 233077926 233078160 -9586193 - MIR SINE MIR 0 262 6 255 289 164 19 chr1 233078257 233078361 -9585992 + MIR3 SINE MIR 9 127 -81 2154 133 0 0 chr1 233078792 233079086 -9585267 - AluSx SINE Alu -18 294 1 1234 186 120 25 chr1 233080866 233081140 -9583213 - AluJo SINE Alu -11 301 2 235 264 8 72 chr1 233082204 233082329 -9582024 + L2 LINE L2 2997 3113 -159 703 202 0 0 chr1 233082506 233082635 -9581718 + FLAM_A SINE Alu 1 129 -4 301 264 0 23 chr1 233083567 233083654 -9580699 + (CATATA)n Simple_repeat Simple_repeat 3 87 0 1808 188 6 12 chr1 233083655 233084000 -9580353 - MER7A DNA MER2_type -5 341 1 320 293 9 0 chr1 233084034 233084140 -9580213 + L1MC4a LINE L1 4879 4985 -1161 447 309 53 19 chr1 233084149 233084405 -9579948 + L1MC4a LINE L1 5225 5489 -673 382 203 112 0 chr1 233084618 233084759 -9579594 + L1MC4a LINE L1 5671 5826 -302 459 323 68 36 chr1 233085106 233085326 -9579027 - MIR SINE MIR -2 260 34 391 295 90 30 chr1 233085369 233085535 -9578818 - L2 LINE L2 -227 3086 2911 244 286 138 39 chr1 233085537 233085848 -9578505 - L1ME LINE L1 -224 5897 5556 1916 248 152 46 chr1 233085963 233086782 -9577571 - HAL1 LINE L1 -113 2394 1392 2477 37 7 3 chr1 233086782 233087079 -9577274 - AluY SINE Alu -13 298 1 1916 248 152 46 chr1 233087079 233087526 -9576827 - HAL1 LINE L1 -1115 1392 994 4240 257 104 34 chr1 233087526 233087692 -9576661 - L2 LINE L2 -15 3298 3145 2295 120 0 0 chr1 233087692 233087993 -9576360 + AluSx SINE Alu 1 301 -11 4240 257 104 34 chr1 233087993 233089342 -9575011 - L2 LINE L2 -168 3145 1648 414 0 0 0 chr1 233089342 233089388 -9574965 + (TG)n Simple_repeat Simple_repeat 2 47 0 4240 257 104 34 chr1 233089388 233089724 -9574629 - L2 LINE L2 -1665 1648 1337 395 279 29 29 chr1 233089779 233089915 -9574438 - MER5B DNA MER1_type -40 138 3 276 295 29 14 chr1 233090319 233090458 -9573895 + MARNA DNA Mariner 307 447 -139 185 301 133 36 chr1 233091303 233091386 -9572967 + L2 LINE L2 3199 3289 -24 409 234 69 86 chr1 233091623 233091798 -9572555 + MER5B DNA MER1_type 5 176 -2 2229 128 0 0 chr1 233092256 233092568 -9571785 + AluSx SINE Alu 1 312 0 273 372 45 0 chr1 233093876 233094145 -9570208 - L1ME LINE L1 -458 5663 5383 258 302 38 19 chr1 233144169 233144275 -9520078 - L1ME LINE L1 -458 5663 5556 2036 245 129 46 chr1 233144390 233145209 -9519144 - HAL1 LINE L1 -113 2394 1403 2509 37 7 3 chr1 233145209 233145506 -9518847 - AluY SINE Alu -13 298 1 2036 245 129 46 chr1 233145506 233145953 -9518400 - HAL1 LINE L1 -1104 1403 994 4241 253 105 35 chr1 233145953 233146119 -9518234 - L2 LINE L2 -15 3298 3145 2283 120 0 0 chr1 233146119 233146420 -9517933 + AluSx SINE Alu 1 301 -11 4241 253 105 35 chr1 233146420 233147769 -9516584 - L2 LINE L2 -168 3145 1648 450 0 0 0 chr1 233147769 233147819 -9516534 + (TG)n Simple_repeat Simple_repeat 2 51 0 4241 253 105 35 chr1 233147819 233148155 -9516198 - L2 LINE L2 -1665 1648 1337 389 279 29 29 chr1 233148210 233148346 -9516007 - MER5B DNA MER1_type -40 138 3 433 354 70 11 chr1 233148610 233148980 -9515373 + L1ME LINE L1 5383 5774 -347 2218 128 0 0 chr1 233150190 233150502 -9513851 - AluSx SINE Alu 0 312 1 477 234 69 86 chr1 233150960 233151135 -9513218 - MER5B DNA MER1_type -2 176 5 184 301 133 36 chr1 233151372 233151455 -9512898 - L2 LINE L2 -24 3289 3199 400 300 25 12 chr1 233152300 233152460 -9511893 - MARNA DNA Mariner -139 447 286 225 278 0 0 chr1 233152485 233152539 -9511814 + MARNA DNA Mariner 399 452 -134 614 310 110 27 chr1 233152549 233153000 -9511353 - L2 LINE L2 -22 3291 2799 48 53 0 0 chr1 233153548 233153624 -9510729 + AT_rich Low_complexity Low_complexity 1 76 0 604 158 0 61 chr1 233154059 233154173 -9510180 + AluSg/x SINE Alu 196 302 -10 3139 207 38 14 chr1 233154384 233155011 -9509342 - MER82 DNA MER2_type -11 642 1 935 253 144 10 chr1 233155025 233155424 -9508929 - L1ME3A LINE L1 -214 5956 5482 192 152 0 0 chr1 233155569 233155602 -9508751 + (TG)n Simple_repeat Simple_repeat 2 34 0 1130 202 56 5 chr1 233156002 233156215 -9508138 + MER58A DNA MER1_type 1 224 0 460 253 56 82 chr1 233156668 233156973 -9507380 - L1ME4a LINE L1 -18 6103 5807 328 130 11 43 chr1 233159756 233159848 -9504505 + CT-rich Low_complexity Low_complexity 3 91 0 6176 50 10 3 chr1 233159855 233160583 -9503770 - L1PA7 LINE L1 -8 6146 5414 533 346 21 77 chr1 233160897 233161224 -9503129 - L2 LINE L2 0 3272 2964 2691 95 34 14 chr1 233161428 233161785 -9502568 - THE1B LTR MaLR 0 364 1 201 361 202 14 chr1 233161785 233162131 -9502222 - L2 LINE L2 -504 2810 2394 1176 211 252 22 chr1 233162367 233162689 -9501664 - MSTD LTR MaLR 0 396 1 780 236 50 0 chr1 233163123 233163305 -9501048 + MER20 DNA MER1_type 29 219 0 186 240 40 0 chr1 233163363 233163413 -9500940 + MIR SINE MIR 87 138 -124 201 39 0 0 chr1 233163430 233163456 -9500897 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 249 200 31 0 chr1 233163812 233163877 -9500476 - L1MA8 LINE L1 -4 6287 6221 291 256 295 0 chr1 233163911 233164067 -9500286 - MIR SINE MIR -48 214 13 312 120 0 0 chr1 233164108 233164158 -9500195 + (T)n Simple_repeat Simple_repeat 1 50 0 250 217 0 0 chr1 233165661 233165707 -9498646 - L2 LINE L2 -18 3254 3209 21 0 0 0 chr1 233167122 233167143 -9497210 + AT_rich Low_complexity Low_complexity 1 21 0 181 273 0 18 chr1 233167812 233167867 -9496486 - L2 LINE L2 -4 3309 3256 233 200 0 67 chr1 233168817 233168892 -9495461 + T-rich Low_complexity Low_complexity 1 70 0 345 341 23 23 chr1 233168916 233169045 -9495308 - MIR SINE MIR -107 155 27 14440 111 39 31 chr1 233169125 233171523 -9492830 + Tigger1 DNA MER2_type 1 2418 0 749 181 0 8 chr1 233172406 233172533 -9491820 - FLAM_C SINE Alu -7 126 1 319 319 0 30 chr1 233173327 233173462 -9490891 + L2 LINE L2 2037 2167 -1147 360 267 200 7 chr1 233173467 233173617 -9490736 - MER5A DNA MER1_type -2 187 9 1354 265 160 7 chr1 233173645 233174184 -9490169 + L2 LINE L2 2186 2806 -508 333 231 0 83 chr1 233174211 233174319 -9490034 + MER5B DNA MER1_type 63 161 -17 272 357 0 0 chr1 233174322 233174434 -9489919 + L2 LINE L2 2807 2918 -396 540 287 66 6 chr1 233175565 233175746 -9488607 + MIR SINE MIR 13 204 -58 1650 118 75 47 chr1 233175746 233176025 -9488328 + AluJb SINE Alu 1 287 -25 1963 184 7 36 chr1 233176064 233176514 -9487839 + L1MB4 LINE L1 5744 6180 0 475 131 12 12 chr1 233176517 233176601 -9487752 + L1MB8 LINE L1 6093 6176 -2 216 185 0 74 chr1 233176605 233176659 -9487694 + MIR SINE MIR 209 258 -4 2255 103 14 0 chr1 233177332 233177624 -9486729 + AluSx SINE Alu 5 300 -12 28 29 0 0 chr1 233177734 233177769 -9486584 + AT_rich Low_complexity Low_complexity 1 35 0 1815 142 66 81 chr1 233178828 233179238 -9485115 - MLT2D LTR ERVL -10 404 1 2718 240 109 12 chr1 233180289 233181267 -9483086 - L1ME3A LINE L1 -9 6161 5100 1248 101 112 0 chr1 233181552 233181731 -9482622 + MER30 DNA MER1_type 1 199 -31 2164 76 17 31 chr1 233182907 233183219 -9481134 + AluY SINE Alu 1 308 0 686 275 31 9 chr1 233184859 233185081 -9479272 - MIR SINE MIR 0 262 36 2370 90 0 7 chr1 233185488 233185789 -9478564 - AluSx SINE Alu -13 299 1 24 32 0 0 chr1 233186209 233186240 -9478113 + AT_rich Low_complexity Low_complexity 1 31 0 297 289 12 0 chr1 233186900 233186983 -9477370 - MIR3 SINE MIR -4 204 121 232 331 146 54 chr1 233187273 233187403 -9476950 - L2 LINE L2 -2 3270 3129 3120 209 19 5 chr1 233187485 233188075 -9476278 - MER77 LTR ERV1 -6 599 2 195 233 0 0 chr1 233188116 233188159 -9476194 - L2 LINE L2 -215 3057 3015 312 333 0 11 chr1 233188516 233188603 -9475750 - L2 LINE L2 -1 3271 3186 232 368 37 0 chr1 233189620 233189756 -9474597 - MIR SINE MIR -3 259 119 242 259 0 35 chr1 233190007 233190092 -9474261 + CT-rich Low_complexity Low_complexity 2 83 0 243 291 0 64 chr1 233190366 233190476 -9473877 + MIR3 SINE MIR 5 107 -101 433 282 146 57 chr1 233192633 233193058 -9471295 - L2 LINE L2 -1 3271 2809 1859 145 0 32 chr1 233195286 233195596 -9468757 + AluJo SINE Alu 1 300 -12 584 274 49 10 chr1 233196506 233196710 -9467643 + MIR SINE MIR 41 252 -10 21 0 0 0 chr1 233197093 233197114 -9467239 + AT_rich Low_complexity Low_complexity 1 21 0 215 163 163 0 chr1 233197123 233197172 -9467181 + L2 LINE L2 3216 3272 0 389 300 0 0 chr1 233197241 233197331 -9467022 - L2 LINE L2 0 3313 3224 523 304 6 17 chr1 233199460 233199641 -9464712 + MIR3 SINE MIR 16 194 -14 289 234 16 0 chr1 233200004 233200068 -9464285 - L2 LINE L2 -1 3271 3207 390 42 0 0 chr1 233200397 233200445 -9463908 + (CA)n Simple_repeat Simple_repeat 1 48 0 2167 82 0 48 chr1 233201476 233201809 -9462544 - AluY SINE Alu 0 319 1 755 305 90 20 chr1 233202140 233202581 -9461772 + L1ME3 LINE L1 4480 4955 -1191 1088 313 73 13 chr1 233202924 233203461 -9460892 + L1ME3 LINE L1 5383 5951 -211 23 0 0 0 chr1 233203718 233203741 -9460612 + AT_rich Low_complexity Low_complexity 1 23 0 1509 177 70 12 chr1 233204630 233204974 -9459379 - MLT1A1 LTR MaLR -1 364 1 186 348 123 14 chr1 233204974 233205112 -9459241 + L2 LINE L2 2470 2622 -692 210 313 104 43 chr1 233205499 233205614 -9458739 + L2 LINE L2 3143 3264 -8 262 265 43 43 chr1 233205652 233205769 -9458584 + L2 LINE L2 3193 3309 -4 180 0 0 0 chr1 233205932 233205952 -9458401 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 928 156 44 12 chr1 233206082 233206242 -9458111 + FRAM SINE Alu 1 165 -1 2254 86 20 0 chr1 233207440 233207732 -9456621 + AluSp SINE Alu 1 298 -15 212 81 81 0 chr1 233208173 233208210 -9456143 + L2 LINE L2 3265 3304 -9 2325 110 7 0 chr1 233209239 233209549 -9454804 - AluSx SINE Alu 0 312 1 269 240 173 10 chr1 233209795 233209899 -9454454 - L2 LINE L2 0 3313 3193 403 301 14 0 chr1 233211335 233211481 -9452872 + MIR SINE MIR 80 227 -35 2453 125 75 8 chr1 233211880 233212279 -9452074 - MSTB LTR MaLR 0 426 1 237 158 26 0 chr1 233212431 233212469 -9451884 + MLT1D LTR MaLR 5 43 -462 872 165 55 0 chr1 233212469 233212651 -9451702 + L1MA8 LINE L1 5859 6050 -241 1200 142 103 26 chr1 233212651 233212884 -9451469 + MLT1D LTR MaLR 255 505 0 1863 145 28 42 chr1 233212983 233213365 -9450988 - L1MB3 LINE L1 -51 6132 5759 415 281 78 30 chr1 233213333 233213500 -9450853 - L1MEd LINE L1 -5487 632 458 * 904 188 201 5 chr1 233213527 233213756 -9450597 - L1P5 LINE L1 -373 5783 5600 2180 118 0 3 chr1 233213756 233214062 -9450291 - AluSx SINE Alu -7 305 1 243 0 0 0 chr1 233214062 233214089 -9450264 + (TTA)n Simple_repeat Simple_repeat 3 29 0 904 188 201 5 chr1 233214089 233214133 -9450220 - L1P5 LINE L1 -555 5601 5429 2002 155 35 37 chr1 233214273 233214377 -9449976 - L1MA4A LINE L1 -5 6298 6195 198 0 0 0 chr1 233214377 233214399 -9449954 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2192 109 0 7 chr1 233214399 233214683 -9449670 - AluSx SINE Alu -30 282 1 2002 155 35 37 chr1 233214683 233214983 -9449370 - L1MA4A LINE L1 -106 6197 5894 1986 156 0 10 chr1 233215441 233215613 -9448740 - AluSx SINE Alu -7 305 136 2141 83 0 0 chr1 233215613 233215878 -9448475 - AluY SINE Alu -12 299 35 1986 156 0 10 chr1 233215878 233216013 -9448340 - AluSx SINE Alu -176 136 1 1901 159 3 0 chr1 233216054 233216337 -9448016 + AluSx SINE Alu 1 284 -28 201 74 0 0 chr1 233216340 233216367 -9447986 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 262 311 45 15 chr1 233216443 233216575 -9447778 + MIR3 SINE MIR 15 150 -58 822 261 99 46 chr1 233217430 233217825 -9446528 - L1MEd LINE L1 -5701 418 3 1845 171 16 0 chr1 233218342 233218657 -9445696 - MLT1B LTR MaLR -63 327 8 2119 133 33 3 chr1 233218900 233219232 -9445121 + MLT1B LTR MaLR 1 342 -48 1148 205 25 11 chr1 233219232 233219510 -9444843 + L1MB8 LINE L1 5891 6172 -6 260 229 83 10 chr1 233219513 233219609 -9444744 + L1M4c LINE L1 1292 1394 -4990 2152 124 13 0 chr1 233219636 233219943 -9444410 + AluSx SINE Alu 2 312 0 271 236 29 0 chr1 233220099 233220173 -9444180 + L1M4c LINE L1 1481 1697 -4685 428 184 26 0 chr1 233220173 233220249 -9444104 - Tigger5 DNA MER2_type -4 2319 2242 339 231 39 0 chr1 233220233 233220311 -9444042 + Tigger5 DNA MER2_type 2236 2316 -7 * 315 192 0 0 chr1 233220314 233220366 -9443987 - Tigger5 DNA MER2_type -2244 79 28 3031 210 42 25 chr1 233220377 233220656 -9443697 + L1M4c LINE L1 1737 2010 -4553 790 180 19 109 chr1 233220656 233220912 -9443441 - MER106A DNA MER1_type -1 235 3 3031 210 42 25 chr1 233220912 233221432 -9442921 + L1M4c LINE L1 2010 2550 -4013 21 0 0 31 chr1 233221470 233221489 -9442864 + AT_rich Low_complexity Low_complexity 1 20 -11 2303 101 0 13 chr1 233221489 233221796 -9442557 - AluSg SINE Alu -7 303 1 21 0 0 31 chr1 233221796 233221808 -9442545 + AT_rich Low_complexity Low_complexity 20 31 0 2034 126 7 3 chr1 233221810 233222095 -9442258 - AluSx SINE Alu -26 286 1 1095 284 93 49 chr1 233222175 233222996 -9441357 + L1M4c LINE L1 3221 4004 -2378 3405 59 25 11 chr1 233222996 233223434 -9440919 + MLT2A1 LTR ERVL 1 444 0 1095 284 93 49 chr1 233223434 233223451 -9440902 + L1M4c LINE L1 4004 4019 -2363 315 0 0 0 chr1 233223451 233223486 -9440867 + (CA)n Simple_repeat Simple_repeat 1 35 0 1095 284 93 49 chr1 233223486 233223659 -9440694 + L1M4c LINE L1 4019 4183 -2199 1088 159 11 0 chr1 233223659 233223848 -9440505 - L1PA16 LINE L1 -16 6150 5960 1095 284 93 49 chr1 233223848 233223958 -9440395 + L1M4c LINE L1 4183 4394 -1988 859 199 27 21 chr1 233224938 233225124 -9439229 - L1ME LINE L1 -437 5727 5541 1671 156 15 106 chr1 233225174 233225196 -9439157 + L1MB1 LINE L1 5816 5838 -351 1549 193 4 0 chr1 233225196 233225476 -9438877 + AluJo SINE Alu 21 301 -11 1671 156 15 106 chr1 233225476 233225578 -9438775 + L1MB1 LINE L1 5838 5948 -241 2253 107 43 38 chr1 233225578 233225951 -9438402 + THE1C LTR MaLR 1 375 0 1671 156 15 106 chr1 233225951 233226222 -9438131 + L1MB1 LINE L1 5948 6176 -13 1544 229 16 49 chr1 233226204 233226434 -9437919 + L1ME2 LINE L1 5724 5933 -231 * 1926 176 3 0 chr1 233226434 233226736 -9437617 + AluJo SINE Alu 1 303 -9 1544 229 16 49 chr1 233226736 233226951 -9437402 + L1ME2 LINE L1 5933 6154 -10 357 237 43 0 chr1 233226955 233227048 -9437305 + L1MC4a LINE L1 6344 6440 -1368 268 178 0 0 chr1 233227043 233227088 -9437265 + L1MC4 LINE L1 6504 6548 -1494 * 835 171 0 0 chr1 233228755 233228884 -9435469 - FLAM_A SINE Alu 0 133 5 206 239 0 0 chr1 233229051 233229097 -9435256 + L3 LINE CR1 1428 1473 -104 1935 140 46 37 chr1 233230145 233230496 -9433857 + THE1A LTR MaLR 2 355 0 2288 118 20 50 chr1 233230668 233230826 -9433527 - Tigger2 DNA MER2_type 0 2718 2557 2082 110 0 4 chr1 233230826 233231099 -9433254 + AluSp SINE Alu 1 272 -41 216 0 0 0 chr1 233231100 233231124 -9433229 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2288 118 20 50 chr1 233231124 233231360 -9432993 - Tigger2 DNA MER2_type -160 2558 2334 1454 209 63 48 chr1 233231400 233231809 -9432544 - MLT2B1 LTR ERVL -41 373 1 606 260 119 21 chr1 233231809 233232094 -9432259 + L2 LINE L2 2997 3309 -4 3330 154 40 18 chr1 233232383 233232980 -9431373 + MER4B LTR ERV1 1 610 0 2156 120 0 3 chr1 233233166 233233467 -9430886 - AluSx SINE Alu -12 300 1 1921 150 186 2 chr1 233234722 233235115 -9429238 - MLT1C LTR MaLR -2 465 1 522 127 13 0 chr1 233235890 233235969 -9428384 - AluJ/FRAM SINE Alu -16 296 217 267 191 0 0 chr1 233235970 233236012 -9428341 - AluY SINE Alu -125 176 135 1515 152 114 70 chr1 233236013 233236442 -9427911 - LTR7 LTR ERV1 -2 448 1 2647 94 48 33 chr1 233236442 233237033 -9427320 - HERVH LTR ERV1 0 7713 5600 3946 137 73 3 chr1 233237034 233237653 -9426700 - HERVH LTR ERV1 -2564 5149 4488 3503 97 4 4 chr1 233237655 233238149 -9426204 - HERVH LTR ERV1 -3720 3993 3500 861 150 27 0 chr1 233238148 233238295 -9426058 - HERVH LTR ERV1 -4423 3290 3140 * 19240 97 41 14 chr1 233238289 233241197 -9423156 - HERVH LTR ERV1 -4726 2987 1 1416 158 109 67 chr1 233241199 233241629 -9422724 - LTR7 LTR ERV1 -2 448 1 560 205 107 0 chr1 233241640 233241762 -9422591 - FLAM_C SINE Alu -1 142 8 290 236 109 27 chr1 233241850 233241960 -9422393 - L1ME LINE L1 -420 5701 5583 2072 127 40 0 chr1 233242068 233242368 -9421985 + AluSp SINE Alu 2 313 0 278 270 27 0 chr1 233242980 233243054 -9421299 + CT-rich Low_complexity Low_complexity 2 77 0 588 246 44 39 chr1 233243760 233243963 -9420390 + Zaphod DNA AcHobo 40 243 -3788 493 315 32 18 chr1 233244483 233244702 -9419651 + HAL1 LINE L1 1492 1713 -794 359 186 0 14 chr1 233244957 233245027 -9419326 - MER116 DNA Mariner 0 80 12 1245 199 111 8 chr1 233245528 233245790 -9418563 - MLT1A1 LTR MaLR -5 360 72 339 25 0 0 chr1 233246116 233246156 -9418197 + (TG)n Simple_repeat Simple_repeat 2 41 0 2426 135 9 0 chr1 233246167 233246514 -9417839 - MLT2D LTR ERVL -63 351 2 1530 140 0 0 chr1 233246740 233246983 -9417370 + AluJo SINE Alu 71 313 0 2452 88 0 0 chr1 233246988 233247294 -9417059 + AluSc SINE Alu 1 306 -3 181 357 0 14 chr1 233247335 233247405 -9416948 + MIR SINE MIR 25 93 -169 333 240 132 9 chr1 233247746 233247896 -9416457 + MIR3 SINE MIR 33 202 -6 313 348 22 7 chr1 233248690 233248828 -9415525 + MIR3 SINE MIR 21 160 -48 244 195 85 85 chr1 233248830 233248912 -9415441 - MER117 DNA MER1_type -2 195 114 2338 84 7 3 chr1 233249335 233249633 -9414720 + AluSq SINE Alu 1 299 -14 568 260 5 36 chr1 233249645 233249837 -9414516 - MIR SINE MIR -43 219 34 521 223 109 26 chr1 233251115 233251308 -9413045 + MIR SINE MIR 50 258 -4 196 182 0 45 chr1 233251420 233251464 -9412889 - L3 LINE CR1 -18 1559 1518 267 148 29 48 chr1 233251744 233251890 -9412463 + GA-rich Low_complexity Low_complexity 1 143 0 642 213 8 8 chr1 233252770 233252897 -9411456 - MER45A DNA AcHobo 0 178 52 1928 161 3 3 chr1 233253263 233253574 -9410779 + AluJb SINE Alu 1 311 -1 2066 145 0 7 chr1 233253578 233253882 -9410471 + AluSx SINE Alu 1 302 -10 189 0 0 0 chr1 233253937 233253958 -9410395 + (A)n Simple_repeat Simple_repeat 1 21 0 229 130 22 54 chr1 233254015 233254107 -9410246 + T-rich Low_complexity Low_complexity 2 90 0 266 130 0 37 chr1 233254126 233254180 -9410173 - Alu SINE Alu 0 302 251 215 247 108 0 chr1 233254599 233254692 -9409661 + MIR SINE MIR 88 190 -72 2243 120 0 0 chr1 233255136 233255435 -9408918 + AluSq SINE Alu 1 299 -14 1998 183 18 0 chr1 233255436 233255819 -9408534 - MLT1B LTR MaLR 0 390 1 666 260 93 50 chr1 233257493 233257816 -9406537 - MLT1I LTR MaLR -62 347 11 523 254 85 54 chr1 233258061 233258547 -9405806 - L1MEc LINE L1 -4939 1299 785 294 313 78 22 chr1 233259045 233259294 -9405059 - L2 LINE L2 -272 3041 2780 3339 89 11 0 chr1 233259319 233259768 -9404585 + L1PA13 LINE L1 5710 6163 0 2287 98 0 0 chr1 233260120 233260407 -9403946 - AluSx SINE Alu -25 287 1 2267 104 17 0 chr1 233261434 233261733 -9402620 + AluSc SINE Alu 1 304 -5 1162 299 52 60 chr1 233262834 233262990 -9401363 - L2 LINE L2 -448 2866 2710 1473 160 63 52 chr1 233262990 233263165 -9401188 - AluJb SINE Alu 0 312 142 2329 94 0 10 chr1 233263165 233263472 -9400881 - AluSx SINE Alu -8 304 1 1473 160 63 52 chr1 233263472 233263616 -9400737 - AluJb SINE Alu -170 142 1 1162 299 52 60 chr1 233263616 233263694 -9400659 - L2 LINE L2 -604 2710 2633 928 182 6 0 chr1 233263694 233263853 -9400500 + FRAM SINE Alu 1 160 -6 1162 299 52 60 chr1 233263853 233264383 -9399970 - L2 LINE L2 -681 2633 2107 1596 173 22 26 chr1 233264385 233264697 -9399656 + AluJo SINE Alu 1 311 -1 1897 188 85 25 chr1 233264760 233265208 -9399145 - MLT1D LTR MaLR 0 505 31 2414 151 51 2 chr1 233265208 233265620 -9398733 + MSTB1 LTR MaLR 1 432 0 1721 144 21 28 chr1 233265733 233266017 -9398336 + AluJo SINE Alu 1 282 -30 272 381 0 8 chr1 233266056 233266190 -9398163 - L2 LINE L2 -1320 1994 1862 2828 143 22 20 chr1 233266579 233267035 -9397318 - MSTB2 LTR MaLR 0 457 1 237 108 0 0 chr1 233267438 233267475 -9396878 + (TC)n Simple_repeat Simple_repeat 1 37 0 766 177 0 0 chr1 233267721 233267851 -9396502 + FLAM_A SINE Alu 4 133 0 365 317 70 0 chr1 233268179 233268365 -9395988 + L2 LINE L2 3115 3313 0 498 293 80 64 chr1 233268600 233269101 -9395252 + HAL1 LINE L1 1185 1693 -814 601 154 27 13 chr1 233269452 233269601 -9394752 + CT-rich Low_complexity Low_complexity 1 151 0 1379 201 4 4 chr1 233269873 233270117 -9394236 + AluJb SINE Alu 2 245 -67 2129 103 41 0 chr1 233271420 233271711 -9392642 - AluSx SINE Alu -4 308 6 1021 251 125 35 chr1 233272149 233272612 -9391741 - MLT1D LTR MaLR 0 505 1 2046 158 27 33 chr1 233273097 233273465 -9390888 + MSTC LTR MaLR 1 366 -62 * 2223 106 6 30 chr1 233273449 233273778 -9390575 - MSTC LTR MaLR -62 366 46 666 145 53 15 chr1 233273799 233273930 -9390423 - FRAM SINE Alu 0 176 41 23 0 0 0 chr1 233273939 233273962 -9390391 + AT_rich Low_complexity Low_complexity 1 23 0 2298 114 3 0 chr1 233273964 233274270 -9390083 + AluSx SINE Alu 1 307 -5 238 221 115 39 chr1 233274281 233274385 -9389968 + L1ME4a LINE L1 5995 6106 -15 2033 137 10 0 chr1 233274401 233274693 -9389660 - AluSq SINE Alu -18 295 1 326 208 21 0 chr1 233274862 233274958 -9389395 + L2 LINE L2 2477 2574 -740 481 200 0 0 chr1 233274980 233275065 -9389288 - FLAM_A SINE Alu -12 130 46 482 256 222 18 chr1 233275137 233275572 -9388781 + L2 LINE L2 2618 3137 -176 265 188 78 16 chr1 233275572 233275636 -9388717 + L2 LINE L2 3246 3313 0 2229 100 0 0 chr1 233276359 233276683 -9387670 + AluSg SINE Alu 1 324 0 3347 224 19 22 chr1 233276683 233277553 -9386800 + L1M4 LINE L1 4504 5371 -775 2318 103 0 0 chr1 233277555 233277856 -9386497 + AluSx SINE Alu 5 305 -7 918 215 64 34 chr1 233277858 233278123 -9386230 + MLT1C LTR MaLR 195 467 0 1592 135 30 59 chr1 233278123 233278280 -9386073 + L1MC3 LINE L1 7299 7459 -326 2002 149 3 7 chr1 233278280 233278582 -9385771 + AluJb SINE Alu 1 301 -11 2335 103 0 0 chr1 233278582 233278884 -9385469 + AluSg SINE Alu 1 302 -8 228 35 0 0 chr1 233278884 233278913 -9385440 + (CA)n Simple_repeat Simple_repeat 2 30 0 1592 135 30 59 chr1 233278913 233279057 -9385296 + L1MC3 LINE L1 7456 7593 -192 943 143 93 11 chr1 233279058 233279240 -9385113 + L1MC2 LINE L1 6137 6333 -11 1103 256 91 34 chr1 233279604 233280218 -9384135 + L1ME3A LINE L1 5215 5886 -284 2361 99 3 0 chr1 233280346 233280650 -9383703 + AluSg SINE Alu 1 305 -5 1575 181 46 62 chr1 233280894 233281265 -9383088 - MLT1A1 LTR MaLR 0 365 1 195 42 0 0 chr1 233281619 233281643 -9382710 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1825 150 40 0 chr1 233281643 233281917 -9382436 - AluJb SINE Alu -27 285 1 2614 45 7 0 chr1 233281946 233282255 -9382098 + AluY SINE Alu 1 311 0 240 225 251 43 chr1 233282430 233282617 -9381736 - MLT1L LTR MaLR -69 546 321 260 305 59 47 chr1 233282960 233283112 -9381241 - MIR SINE MIR -60 148 39 2017 124 7 10 chr1 233283889 233284215 -9380138 + AluSx SINE Alu 1 312 0 383 313 52 0 chr1 233284357 233284472 -9379881 - L2 LINE L2 -4 3309 3189 980 143 0 14 chr1 233284848 233284995 -9379358 + AluJ SINE Alu 3 147 -165 924 195 0 0 chr1 233285439 233285593 -9378760 + AluJ SINE Alu 129 282 -30 191 156 44 0 chr1 233285613 233285658 -9378695 + GA-rich Low_complexity Low_complexity 3 49 0 324 0 0 0 chr1 233286389 233286425 -9377928 + (TG)n Simple_repeat Simple_repeat 2 37 0 899 239 49 40 chr1 233286947 233287260 -9377093 + LTR16A LTR ERVL 138 448 -2 1452 186 22 25 chr1 233287301 233287575 -9376778 + AluJo SINE Alu 6 278 -34 587 216 6 22 chr1 233287603 233287784 -9376569 + GA-rich Low_complexity Low_complexity 2 179 0 597 279 50 39 chr1 233287794 233288191 -9376162 + HERV16 LTR ERVL 23 479 -4517 2301 147 50 42 chr1 233288193 233288696 -9375657 + L1MB8 LINE L1 5672 6178 0 197 333 120 45 chr1 233289563 233290170 -9374183 + L2 LINE L2 1848 2500 -814 1783 195 0 3 chr1 233290444 233290742 -9373611 - AluJo SINE Alu -15 297 1 3923 195 31 50 chr1 233290779 233291678 -9372675 - L1MB7 LINE L1 -1 6183 5302 2007 155 0 0 chr1 233291805 233292102 -9372251 + AluSx SINE Alu 1 297 -15 350 287 52 11 chr1 233292265 233292439 -9371914 - L1ME3A LINE L1 -230 5940 5760 356 317 12 37 chr1 233292448 233292612 -9371741 + L2 LINE L2 2657 2816 -498 3659 258 57 59 chr1 233292659 233292922 -9371431 - L1MCc LINE L1 -4889 1534 1272 1478 224 3 14 chr1 233292922 233293216 -9371137 + AluJo SINE Alu 1 291 -21 3659 258 57 59 chr1 233293216 233294950 -9369403 - L1MCc LINE L1 -5151 1272 19 1403 252 67 72 chr1 233295104 233295477 -9368876 - HAL1 LINE L1 -7 2500 2131 1985 139 0 10 chr1 233295477 233295772 -9368581 - AluSx SINE Alu -20 292 1 1403 252 67 72 chr1 233295772 233296101 -9368252 - HAL1 LINE L1 -376 2131 1802 1919 149 121 40 chr1 233296111 233296507 -9367846 - MSTA LTR MaLR 0 428 1 2349 216 32 22 chr1 233296661 233297161 -9367192 + MLT2B2 LTR ERVL 3 507 -8 2594 231 138 82 chr1 233297166 233298535 -9365818 - HAL1 LINE L1 -885 1622 177 1085 156 11 0 chr1 233298597 233298783 -9365570 + AluJb SINE Alu 123 310 -2 1924 129 32 23 chr1 233299064 233299373 -9364980 + AluJo SINE Alu 1 312 0 197 342 0 13 chr1 233299389 233299465 -9364888 - L2 LINE L2 -3152 162 88 2947 139 50 2 chr1 233299736 233300232 -9364121 - LTR45 LTR ERV1 -3 522 3 2396 95 0 9 chr1 233300314 233300629 -9363724 + AluSx SINE Alu 1 312 0 1476 142 0 0 chr1 233300736 233300941 -9363412 + AluJb SINE Alu 86 290 -22 497 205 8 0 chr1 233302563 233302690 -9361663 + GA-rich Low_complexity Low_complexity 1 128 0 2125 76 33 11 chr1 233302728 233303029 -9361324 + AluSx SINE Alu 2 308 0 1450 181 6 54 chr1 233303935 233304063 -9360290 + AluJo SINE Alu 1 134 -178 675 202 0 0 chr1 233304063 233304226 -9360127 - FLAM_C SINE Alu 0 165 3 1450 181 6 54 chr1 233304226 233304410 -9359943 + AluJo SINE Alu 134 299 -13 1562 150 44 3 chr1 233304417 233304711 -9359642 + L1MA4A LINE L1 5991 6296 -7 191 149 0 43 chr1 233305153 233305200 -9359153 + (GGA)n Simple_repeat Simple_repeat 2 46 0 192 209 0 0 chr1 233307018 233307061 -9357292 + L2 LINE L2 3271 3313 0 373 289 16 16 chr1 233307139 233307267 -9357086 + L2 LINE L2 3136 3263 -9 737 190 84 0 chr1 233307593 233307735 -9356618 + L1MB3 LINE L1 5660 5813 -370 1687 170 68 33 chr1 233308154 233308260 -9356093 + L1MB3 LINE L1 5804 5905 -278 2373 104 0 3 chr1 233308260 233308569 -9355784 + AluSx SINE Alu 1 308 -4 1687 170 68 33 chr1 233308569 233308827 -9355526 + L1MB3 LINE L1 5905 6181 -2 282 316 143 0 chr1 233309311 233309444 -9354909 + L2 LINE L2 3162 3313 0 417 20 0 0 chr1 233309455 233309505 -9354848 + (CA)n Simple_repeat Simple_repeat 2 51 0 2433 105 0 0 chr1 233309739 233310052 -9354301 - AluSq SINE Alu 0 313 1 200 214 43 43 chr1 233312162 233312232 -9352121 + L2 LINE L2 3198 3267 -5 2399 193 143 53 chr1 233312379 233313044 -9351309 + LTR8A LTR ERV1 1 725 -2 5106 142 23 30 chr1 233313059 233313968 -9350385 + MER4D LTR ERV1 1 903 0 274 323 40 0 chr1 233314176 233314275 -9350078 + MER34 LTR ERV1 1 103 -439 * 1439 196 97 72 chr1 233314274 233314748 -9349605 + LTR29 LTR ERV1 137 622 0 317 364 38 34 chr1 233316008 233316247 -9348106 - MIR SINE MIR -12 250 11 216 179 26 0 chr1 233316301 233316340 -9348013 + CT-rich Low_complexity Low_complexity 2 41 0 198 0 0 0 chr1 233317261 233317283 -9347070 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 711 144 87 64 chr1 233317413 233317586 -9346767 + MLT1C LTR MaLR 8 184 -283 1647 151 14 45 chr1 233317586 233317878 -9346475 + AluJo SINE Alu 2 284 -28 2082 199 65 49 chr1 233317915 233318390 -9345963 - L1MEc LINE L1 -801 5414 4948 641 219 8 0 chr1 233318390 233318509 -9345844 + FLAM_A SINE Alu 1 120 -13 2162 103 3 48 chr1 233318509 233318820 -9345533 - AluSq SINE Alu -16 297 1 2082 199 65 49 chr1 233318820 233318970 -9345383 - L1MEc LINE L1 -1266 4949 4778 1104 166 71 5 chr1 233318979 233319190 -9345163 - AluJb SINE Alu -1 311 87 2859 3 0 0 chr1 233319216 233319517 -9344836 + AluYa5 SINE Alu 1 301 -10 2052 137 17 0 chr1 233319526 233319818 -9344535 + AluSx SINE Alu 1 297 -15 4411 243 64 59 chr1 233319819 233320367 -9343986 - L1MEc LINE L1 -1460 4755 4211 3372 124 46 28 chr1 233320367 233320949 -9343404 + LTR49 LTR ERV1 1 593 -2 4411 243 64 59 chr1 233320949 233321806 -9342547 - L1MEc LINE L1 -2004 4211 3360 2094 138 3 0 chr1 233321806 233322104 -9342249 - AluSx SINE Alu -13 299 1 4411 243 64 59 chr1 233322104 233323150 -9341203 - L1MEc LINE L1 -2855 3360 2290 41057 50 23 49 chr1 233323739 233329701 -9334652 - L1P1 LINE L1 -351 5804 4 1533 181 97 32 chr1 233329706 233330148 -9334205 - L1MEc LINE L1 -4079 2317 1847 241 309 0 53 chr1 233330178 233330272 -9334081 + L2 LINE L2 2695 2783 -531 979 200 323 11 chr1 233331691 233331976 -9332377 + MLT1A2 LTR MaLR 1 374 0 252 227 15 15 chr1 233332059 233332125 -9332228 + CT-rich Low_complexity Low_complexity 4 69 0 306 0 0 0 chr1 233332125 233332159 -9332194 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 1688 177 3 32 chr1 233332752 233333068 -9331285 + AluJo SINE Alu 1 307 -5 275 374 97 17 chr1 233333516 233333754 -9330599 + L3 LINE CR1 198 454 -1123 2221 123 0 3 chr1 233333884 233334192 -9330161 + AluSq SINE Alu 3 309 -4 888 271 102 36 chr1 233334446 233334885 -9329468 - L2 LINE L2 -639 2675 2208 1919 117 13 23 chr1 233334949 233335256 -9329097 + AluSx SINE Alu 5 308 -4 519 189 0 0 chr1 233335423 233335518 -9328835 + MER53 DNA DNA 95 189 0 329 284 34 0 chr1 233337129 233337217 -9327136 + L2 LINE L2 3170 3260 -12 190 253 215 48 chr1 233337631 233337817 -9326536 + L2 LINE L2 3015 3231 -41 572 158 0 0 chr1 233338482 233338564 -9325789 - FRAM SINE Alu -22 154 73 867 280 49 79 chr1 233338822 233339329 -9325024 + MLT1J LTR MaLR 1 492 -19 592 284 122 9 chr1 233339583 233339805 -9324548 - MIR SINE MIR -14 248 2 555 258 13 104 chr1 233340149 233340448 -9323905 + L2 LINE L2 2823 3094 -219 903 87 0 0 chr1 233340452 233340578 -9323775 + (TTCC)n Simple_repeat Simple_repeat 2 127 0 180 0 0 0 chr1 233340582 233340602 -9323751 + (TTTTC)n Simple_repeat Simple_repeat 3 22 0 552 162 72 54 chr1 233340605 233340716 -9323637 - FLAM_A SINE Alu -29 113 1 444 224 236 0 chr1 233340718 233340883 -9323470 + L2 LINE L2 3109 3312 -1 2819 187 36 4 chr1 233342039 233342562 -9321791 - MER44D DNA MER2_type -8 597 3 279 277 258 19 chr1 233343018 233343177 -9321176 + MIR SINE MIR 54 250 -12 28 91 0 0 chr1 233343941 233344018 -9320335 + AT_rich Low_complexity Low_complexity 1 77 0 1567 179 45 24 chr1 233344084 233344375 -9319978 - AluJo SINE Alu -15 297 1 32 91 0 0 chr1 233344375 233344463 -9319890 + AT_rich Low_complexity Low_complexity 1 88 0 219 156 111 0 chr1 233346151 233346196 -9318157 + L2 LINE L2 3257 3306 -7 376 315 107 89 chr1 233347040 233347879 -9316474 - L1M2 LINE L1 -5467 1382 529 213 0 81 0 chr1 233348368 233348405 -9315948 + A-rich Low_complexity Low_complexity 2 41 0 205 138 0 0 chr1 233349569 233349598 -9314755 + (TTC)n Simple_repeat Simple_repeat 2 30 0 207 0 0 0 chr1 233350497 233350520 -9313833 + (T)n Simple_repeat Simple_repeat 1 23 0 433 232 7 84 chr1 233351606 233351748 -9312605 - MIR3 SINE MIR -9 199 69 322 198 30 20 chr1 233355767 233355868 -9308485 + CT-rich Low_complexity Low_complexity 4 105 0 435 208 0 46 chr1 233357669 233357842 -9306511 + C-rich Low_complexity Low_complexity 4 168 0 254 265 281 32 chr1 233358145 233358330 -9306023 - MIR SINE MIR -28 234 4 2298 112 0 0 chr1 233359319 233359624 -9304729 - AluSc SINE Alu -4 305 1 194 340 109 53 chr1 233410929 233411267 -9253086 + L2 LINE L2 2900 3256 -16 601 293 54 33 chr1 233411586 233411828 -9252525 - L2 LINE L2 -15 3298 3052 1052 126 0 0 chr1 233411828 233411963 -9252390 + AluSq/x SINE Alu 1 135 -178 2099 123 10 19 chr1 233411963 233412271 -9252082 + AluSx SINE Alu 1 305 -7 1312 283 105 34 chr1 233412281 233413029 -9251324 - L2 LINE L2 -248 3065 2254 1650 147 120 33 chr1 233413098 233413431 -9250922 - MLT1A1 LTR MaLR -3 362 1 2386 37 4 0 chr1 233413691 233413961 -9250392 + AluY SINE Alu 40 310 -1 200 365 0 0 chr1 233414610 233414673 -9249680 + MER5A DNA MER1_type 75 137 -52 301 217 43 29 chr1 233415555 233415624 -9248729 - L1MCa LINE L1 -4362 2064 1995 24 53 0 0 chr1 233415629 233415667 -9248686 + AT_rich Low_complexity Low_complexity 1 38 0 485 32 0 0 chr1 233416106 233416168 -9248185 + AluY SINE Alu 240 301 -9 739 176 0 0 chr1 233416572 233416691 -9247662 - MER5A DNA MER1_type -5 184 66 1207 166 5 101 chr1 233416691 233417087 -9247266 - L1PA4 LINE L1 -1 6171 5840 279 216 0 0 chr1 233417087 233417138 -9247215 - MER5A DNA MER1_type -133 56 6 205 231 211 48 chr1 233417335 233417482 -9246871 - MIR SINE MIR -6 256 86 2027 101 0 11 chr1 233417850 233418117 -9246236 + AluSx SINE Alu 39 302 -10 187 222 111 0 chr1 233418407 233418452 -9245901 + L2 LINE L2 3182 3231 -82 2305 91 7 3 chr1 233418620 233418918 -9245435 - AluSq SINE Alu -14 299 1 189 0 0 0 chr1 233419076 233419097 -9245256 + (A)n Simple_repeat Simple_repeat 1 21 0 189 260 60 0 chr1 233419230 233419280 -9245073 + L2 LINE L2 3167 3219 -94 2251 121 3 16 chr1 233419694 233420009 -9244344 - AluSx SINE Alu -1 311 1 827 239 15 24 chr1 233421195 233421400 -9242953 + MIR SINE MIR 5 207 -55 259 261 96 43 chr1 233422814 233422929 -9241424 - L2 LINE L2 -18 3254 3134 281 114 17 0 chr1 233422944 233422997 -9241356 - MLT2B1 LTR ERVL 0 515 479 222 191 0 0 chr1 233423023 233423070 -9241283 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1907 151 127 52 chr1 233423092 233423516 -9240837 - MLT2B1 LTR ERVL -64 456 1 263 340 91 39 chr1 233423664 233423896 -9240457 - L2 LINE L2 -353 2961 2718 967 41 48 0 chr1 233424078 233424225 -9240128 + (TTCTC)n Simple_repeat Simple_repeat 5 158 0 2082 115 3 3 chr1 233424226 233424512 -9239841 - AluSx SINE Alu -26 286 1 329 184 32 2 chr1 233424968 233425050 -9239303 + L1MB4 LINE L1 5927 6011 -169 1137 100 7 0 chr1 233425050 233425232 -9239121 - AluSq SINE Alu 0 321 139 1987 166 31 26 chr1 233425474 233425859 -9238494 + MLT1B LTR MaLR 4 390 0 237 132 0 0 chr1 233425877 233425915 -9238438 + (TG)n Simple_repeat Simple_repeat 1 38 0 484 286 71 19 chr1 233426515 233426725 -9237628 + MIR SINE MIR 31 251 -11 440 266 6 46 chr1 233426991 233427153 -9237200 + MIR SINE MIR 37 190 -66 285 98 0 0 chr1 233427497 233427538 -9236815 + (TG)n Simple_repeat Simple_repeat 2 42 0 470 343 120 55 chr1 233428095 233428588 -9235765 + L3 LINE CR1 188 712 -865 186 125 0 0 chr1 233428637 233428669 -9235684 - L2 LINE L2 -1646 1668 1637 2132 103 7 0 chr1 233428868 233429181 -9235172 + AluSx SINE Alu 1 315 0 21 0 0 0 chr1 233429354 233429375 -9234978 + AT_rich Low_complexity Low_complexity 1 21 0 456 210 62 92 chr1 233429572 233429767 -9234586 + MER112 DNA MER1_type 1 189 -71 1793 179 3 10 chr1 233429770 233430078 -9234275 + AluJo SINE Alu 1 306 -6 2565 11 0 0 chr1 233430116 233430392 -9233961 - AluYb8 SINE Alu -4 314 39 536 266 22 14 chr1 233430698 233430837 -9233516 - L3 LINE CR1 -7 1570 1431 1271 208 25 45 chr1 233430837 233431165 -9233188 - MLT1D LTR MaLR 0 505 205 228 202 22 135 chr1 233431160 233431249 -9233104 - MLT1D LTR MaLR -407 98 20 * 2424 80 0 0 chr1 233432419 233432718 -9231635 + AluSx SINE Alu 1 299 -13 1088 268 58 44 chr1 233432740 233433191 -9231162 + LTR16B LTR ERVL 1 457 -7 30 0 0 0 chr1 233433219 233433249 -9231104 + AT_rich Low_complexity Low_complexity 1 30 0 10342 25 10 165 chr1 233433249 233434882 -9229471 - SVA Other Other -3 1383 4 1857 250 50 56 chr1 233434937 233435562 -9228791 - L2 LINE L2 -415 2899 2279 626 247 29 35 chr1 233435556 233435726 -9228627 + L2 LINE L2 2544 2712 -602 * 247 315 37 28 chr1 233435726 233435834 -9228519 + L1MCc LINE L1 862 970 -5961 300 132 179 0 chr1 233436024 233436097 -9228256 + L1MA9 LINE L1 5702 5789 -508 218 125 94 0 chr1 233436110 233436174 -9228179 + (TATAA)n Simple_repeat Simple_repeat 2 71 0 2683 144 45 47 chr1 233436183 233436716 -9227637 + L1MA9 LINE L1 5776 6307 -5 2026 121 57 0 chr1 233436897 233437177 -9227176 + AluSg SINE Alu 1 296 -14 2263 262 43 36 chr1 233437365 233438142 -9226211 + L1MCc LINE L1 822 1603 -4977 2243 227 43 41 chr1 233438142 233438194 -9226159 + MLT1F LTR MaLR 3 53 -489 1670 190 0 10 chr1 233438194 233438489 -9225864 - AluJo SINE Alu -20 292 1 2243 227 43 41 chr1 233438489 233438974 -9225379 + MLT1F LTR MaLR 53 541 -1 2263 262 43 36 chr1 233438974 233439066 -9225287 + L1MCc LINE L1 1603 1693 -4887 591 295 116 27 chr1 233439269 233439676 -9224677 - L2 LINE L2 -2176 1138 696 2032 104 79 0 chr1 233440006 233440286 -9224067 + AluSg SINE Alu 1 302 -8 2643 102 40 6 chr1 233440640 233440992 -9223361 - THE1B LTR MaLR 0 364 1 545 237 242 11 chr1 233441117 233441303 -9223050 - MIR SINE MIR -33 229 1 2287 83 13 29 chr1 233441705 233442019 -9222334 - AluY SINE Alu -2 309 1 2387 98 0 3 chr1 233443077 233443383 -9220970 + AluSx SINE Alu 1 305 -7 2037 121 0 4 chr1 233444360 233444672 -9219681 - AluSx SINE Alu 0 315 5 3743 170 98 8 chr1 233445118 233445860 -9218493 + L1MB8 LINE L1 5365 6173 -5 371 268 77 49 chr1 233446075 233446258 -9218095 - Tigger8 DNA MER2_type -351 315 128 376 305 24 33 chr1 233447274 233447487 -9216866 - L1ME LINE L1 -351 5811 5601 * 748 283 20 4 chr1 233447484 233447735 -9216618 - L1ME LINE L1 -1979 4167 3913 2507 156 32 15 chr1 233447869 233448273 -9216080 - LTR57 LTR ERVL 0 411 1 239 331 83 14 chr1 233449541 233449686 -9214667 + L2 LINE L2 2701 2855 -459 307 314 22 7 chr1 233449952 233450089 -9214264 + LTR16A1 LTR ERVL 319 457 0 3362 183 85 5 chr1 233450123 233450219 -9214134 - MER67C LTR ERV1 0 710 623 2083 118 0 0 chr1 233450219 233450491 -9213862 + AluSg SINE Alu 28 299 -11 3362 183 85 5 chr1 233450491 233451051 -9213302 - MER67C LTR ERV1 -87 623 1 1961 40 0 9 chr1 233451349 233451576 -9212777 + L1PA7 LINE L1 5930 6154 0 624 287 57 11 chr1 233451608 233451873 -9212480 - L1ME3A LINE L1 -272 5898 5622 2247 68 7 4 chr1 233454591 233454870 -9209483 + L1PA8 LINE L1 5887 6166 -6 251 236 14 0 chr1 233454879 233454951 -9209402 + L1MC4 LINE L1 6614 6686 -1356 290 316 142 13 chr1 233454982 233455137 -9209216 + MIR SINE MIR 2 176 -86 373 117 0 33 chr1 233455591 233455651 -9208702 + AluJb SINE Alu 76 133 -169 251 0 0 56 chr1 233455651 233455687 -9208666 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 476 298 102 38 chr1 233456368 233456603 -9207750 - MIR SINE MIR -6 256 7 240 329 57 0 chr1 233456771 233456841 -9207512 + L2 LINE L2 3169 3242 -30 203 162 0 0 chr1 233456898 233456935 -9207418 + (CAA)n Simple_repeat Simple_repeat 2 38 0 6134 77 9 8 chr1 233458184 233458989 -9205364 - L1PA10 LINE L1 0 6168 5363 2342 124 16 0 chr1 233458989 233459352 -9205001 + L1PA10 LINE L1 4978 5346 -800 830 150 17 0 chr1 233460880 233461000 -9203353 + FLAM_A SINE Alu 3 124 -9 2278 91 7 3 chr1 233461512 233461809 -9202544 - AluY SINE Alu 0 311 14 561 151 92 0 chr1 233462568 233462687 -9201666 + L1MB4 LINE L1 6051 6180 0 373 219 115 10 chr1 233462745 233462841 -9201512 - MER103 DNA DNA -47 119 14 245 345 43 36 chr1 233463047 233463186 -9201167 + MIR3 SINE MIR 4 143 -65 5130 129 15 48 chr1 233463192 233463360 -9200993 + L1MA4 LINE L1 5451 5623 -677 2596 80 0 0 chr1 233463360 233463672 -9200681 + AluSx SINE Alu 1 312 0 5130 129 15 48 chr1 233463672 233464382 -9199971 + L1MA4 LINE L1 5623 6300 0 248 220 200 0 chr1 233464423 233464523 -9199830 + MIR SINE MIR 137 256 -6 231 381 68 0 chr1 233465018 233465136 -9199217 + L2 LINE L2 3147 3272 0 2214 82 7 17 chr1 233465348 233465640 -9198713 + AluSp SINE Alu 1 289 -24 793 152 0 38 chr1 233465887 233466019 -9198334 + FLAM_C SINE Alu 2 128 -15 21 0 0 0 chr1 233467194 233467215 -9197138 + AT_rich Low_complexity Low_complexity 1 21 0 197 289 0 0 chr1 233468267 233468312 -9196041 - L2 LINE L2 -1 3271 3227 756 161 24 0 chr1 233468938 233469062 -9195291 + MER34C LTR ERV1 1 127 -458 1896 125 49 7 chr1 233470554 233470841 -9193512 + AluSx SINE Alu 1 299 -13 1100 139 90 20 chr1 233471519 233471720 -9192633 - AluJo SINE Alu -11 301 87 22 56 0 0 chr1 233472070 233472106 -9192247 + AT_rich Low_complexity Low_complexity 1 36 0 743 203 8 8 chr1 233472130 233472263 -9192090 + FLAM_C SINE Alu 2 133 -10 1412 184 26 35 chr1 233472268 233472578 -9191775 + AluJo SINE Alu 1 307 -5 819 213 41 30 chr1 233474267 233474436 -9189917 - FAM SINE Alu 0 175 5 22 56 0 0 chr1 233475667 233475703 -9188650 + AT_rich Low_complexity Low_complexity 1 36 0 2302 84 27 3 chr1 233475837 233476136 -9188217 - AluSg SINE Alu -4 306 1 576 296 62 77 chr1 233476497 233476963 -9187390 - L2 LINE L2 -19 3294 2836 1921 77 0 0 chr1 233477558 233477791 -9186562 + AluY SINE Alu 62 294 -17 192 204 9 195 chr1 233479553 233479666 -9184687 - MIR SINE MIR -67 195 104 649 288 10 26 chr1 233479824 233480058 -9184295 + MIR SINE MIR 30 258 -4 2435 50 0 10 chr1 233480318 233480617 -9183736 + AluY SINE Alu 1 296 -15 1831 145 13 36 chr1 233482493 233482797 -9181556 + AluJo SINE Alu 1 297 -15 223 94 19 19 chr1 233482797 233482850 -9181503 + (TA)n Simple_repeat Simple_repeat 2 54 0 219 36 0 0 chr1 233483105 233483133 -9181220 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 923 289 52 14 chr1 233484089 233484456 -9179897 - L1ME3A LINE L1 -225 5945 5565 538 266 99 21 chr1 233484524 233484806 -9179547 - L1ME3A LINE L1 -568 5596 5293 409 258 114 114 chr1 233484848 233484996 -9179357 - L1ME3A LINE L1 -924 5222 5075 405 0 0 0 chr1 233484996 233485041 -9179312 + (TG)n Simple_repeat Simple_repeat 2 46 0 409 258 114 114 chr1 233485041 233485114 -9179239 - L1ME3A LINE L1 -1071 5075 5003 1546 167 80 7 chr1 233485114 233485390 -9178963 + AluJo SINE Alu 1 296 -16 409 258 114 114 chr1 233485390 233485695 -9178658 - L1ME3A LINE L1 -1142 5004 4695 186 277 143 42 chr1 233486076 233486195 -9178158 - MIR SINE MIR -3 259 129 342 209 22 44 chr1 233487152 233487243 -9177110 + L1MC4 LINE L1 6615 6703 -1339 321 326 0 0 chr1 233487167 233487259 -9177094 - L1MC4 LINE L1 -1337 6705 6614 * 441 180 0 0 chr1 233487260 233487349 -9177004 + (TA)n Simple_repeat Simple_repeat 1 89 0 211 244 35 23 chr1 233487357 233487529 -9176824 + (TAA)n Simple_repeat Simple_repeat 3 176 0 553 276 113 15 chr1 233487575 233487588 -9176765 - MIR SINE MIR -31 231 221 2224 127 0 0 chr1 233487588 233487896 -9176457 - AluSx SINE Alu -3 309 2 553 276 113 15 chr1 233487896 233488085 -9176268 - MIR SINE MIR -41 221 9 2194 96 0 0 chr1 233488717 233489041 -9175312 - AluSg SINE Alu 0 324 1 287 241 165 25 chr1 233489183 233489341 -9175012 - L1ME3A LINE L1 -219 5951 5772 320 363 41 7 chr1 233489411 233489557 -9174796 - L2 LINE L2 -458 2856 2706 204 354 94 47 chr1 233489871 233490148 -9174205 - L2 LINE L2 -1177 2137 1848 22 0 0 0 chr1 233491387 233491409 -9172944 + AT_rich Low_complexity Low_complexity 1 22 0 1774 163 21 0 chr1 233491499 233491787 -9172566 - AluJo SINE Alu -18 294 1 912 122 30 0 chr1 233491787 233491918 -9172435 - AluJo SINE Alu -177 135 1 200 211 0 0 chr1 233492808 233492846 -9171507 + CT-rich Low_complexity Low_complexity 1 38 0 1805 101 116 11 chr1 233493794 233494061 -9170292 - AluSg SINE Alu -15 295 1 2025 149 3 3 chr1 233494064 233494365 -9169988 - AluJb SINE Alu -11 301 1 332 155 107 12 chr1 233495069 233495153 -9169200 + MIR SINE MIR 137 228 -34 1679 81 0 5 chr1 233495179 233495388 -9168965 - AluSq SINE Alu -6 307 100 2283 188 9 47 chr1 233495498 233496050 -9168303 - L1MB2 LINE L1 -2 6169 5639 1183 223 25 45 chr1 233496064 233496418 -9167935 + MLT1A1 LTR MaLR 19 365 0 1712 142 59 24 chr1 233496422 233496484 -9167869 - L1MB2 LINE L1 -532 5639 5581 2115 113 3 49 chr1 233496484 233496810 -9167543 - AluSq SINE Alu -2 311 1 1712 142 59 24 chr1 233496810 233497120 -9167233 - L1MB2 LINE L1 -590 5581 5254 1119 226 92 16 chr1 233497144 233497449 -9166904 - MER2 DNA MER2_type -16 329 2 2779 188 23 12 chr1 233497457 233498106 -9166247 - L1MB2 LINE L1 -912 5234 4579 275 350 17 17 chr1 233498678 233498795 -9165558 - MIR SINE MIR -72 136 20 2316 84 0 34 chr1 233498814 233499137 -9165216 - AluSx SINE Alu 0 312 1 1068 68 0 8 chr1 233499663 233499796 -9164557 + AluY SINE Alu 1 132 -179 195 42 0 0 chr1 233499796 233499820 -9164533 + (A)n Simple_repeat Simple_repeat 1 24 0 2222 72 24 7 chr1 233499820 233500111 -9164242 + AluY SINE Alu 1 296 -15 245 193 18 18 chr1 233501601 233501658 -9162695 + L2 LINE L2 3210 3266 -6 2042 112 4 0 chr1 233501918 233502186 -9162167 - AluSp SINE Alu -41 272 4 529 309 89 32 chr1 233502281 233502527 -9161826 + MIR SINE MIR 3 262 0 941 304 94 11 chr1 233503288 233503926 -9160427 - L1M4 LINE L1 -1367 4779 4089 1892 176 36 36 chr1 233505789 233506341 -9158012 - MLT2A2 LTR ERVL 0 554 1 684 281 63 23 chr1 233506600 233506821 -9157532 - MIR SINE MIR -10 252 23 2039 138 0 3 chr1 233506902 233507198 -9157155 - AluSx SINE Alu -17 295 1 1997 147 0 0 chr1 233509049 233509341 -9155012 - AluSx SINE Alu -20 292 1 223 224 9 84 chr1 233509858 233509965 -9154388 + MIR SINE MIR 164 262 0 401 271 100 28 chr1 233509995 233510246 -9154107 + L1ME LINE L1 5474 5742 -379 1376 206 47 77 chr1 233510331 233510647 -9153706 - L1ME2 LINE L1 0 6164 5867 2190 108 7 0 chr1 233510647 233510942 -9153411 - AluSx SINE Alu -15 297 1 1376 206 47 77 chr1 233510942 233511116 -9153237 - L1ME2 LINE L1 -297 5867 5689 228 122 0 0 chr1 233511120 233511161 -9153192 + (A)n Simple_repeat Simple_repeat 1 41 0 263 299 57 71 chr1 233511436 233511647 -9152706 - L2 LINE L2 -23 3249 3042 324 296 99 7 chr1 233513229 233513371 -9150982 - L1ME4a LINE L1 -263 5858 5704 723 127 87 8 chr1 233513669 233513795 -9150558 + AluJ SINE Alu 1 136 -176 982 193 139 32 chr1 233513814 233513916 -9150437 + MLT1A1 LTR MaLR 56 146 -219 2005 132 0 7 chr1 233513916 233514197 -9150156 + AluSx SINE Alu 1 279 -33 982 193 139 32 chr1 233514197 233514374 -9149979 + MLT1A1 LTR MaLR 146 365 0 494 128 0 0 chr1 233514449 233514527 -9149826 + MADE1 DNA Mariner 1 78 -2 1629 183 20 17 chr1 233515191 233515541 -9148812 - L1MA9 LINE L1 -3 6309 5959 465 19 0 0 chr1 233515573 233515627 -9148726 + (TA)n Simple_repeat Simple_repeat 1 54 0 224 280 34 8 chr1 233515676 233515794 -9148559 + (TA)n Simple_repeat Simple_repeat 1 121 0 279 0 0 0 chr1 233516134 233516165 -9148188 + (TG)n Simple_repeat Simple_repeat 2 32 0 1950 161 0 10 chr1 233516221 233516519 -9147834 + AluJo SINE Alu 1 295 -17 461 246 78 22 chr1 233516629 233516897 -9147456 - L1ME4a LINE L1 -35 6086 5804 260 347 42 0 chr1 233518100 233518195 -9146158 - MIR SINE MIR -67 141 43 346 243 37 0 chr1 233518991 233519098 -9145255 - L1ME4a LINE L1 -2037 5771 5661 650 184 86 37 chr1 233519109 233519272 -9145081 + AluJ SINE Alu 127 297 -15 2243 86 11 0 chr1 233519421 233519721 -9144632 - AluSx SINE Alu 0 303 1 1960 165 0 0 chr1 233519836 233520127 -9144226 - AluJo SINE Alu -21 291 1 22 35 0 0 chr1 233520402 233520431 -9143922 + AT_rich Low_complexity Low_complexity 1 29 0 2218 142 0 0 chr1 233520558 233520869 -9143484 - AluSx SINE Alu -1 311 1 1962 172 80 5 chr1 233520920 233521322 -9143031 - MSTB1 LTR MaLR 0 432 1 357 103 17 0 chr1 233521919 233521977 -9142376 + Tigger7 DNA MER2_type 980 1038 -1449 356 131 16 0 chr1 233521974 233522035 -9142318 + Tigger7 DNA MER2_type 2384 2445 -42 * 2052 106 12 47 chr1 233523104 233523426 -9140927 + AluSx SINE Alu 1 311 -1 200 274 0 20 chr1 233523542 233523593 -9140760 + L2 LINE L2 3262 3311 -2 491 246 71 16 chr1 233524104 233524230 -9140123 + MIR SINE MIR 38 170 -92 198 229 0 0 chr1 233524247 233524282 -9140071 + L2 LINE L2 3221 3255 -17 220 326 174 14 chr1 233525008 233525146 -9139207 - MIR SINE MIR -15 247 88 411 307 145 41 chr1 233525501 233525659 -9138694 - MLT1L LTR MaLR -4 611 471 2240 98 3 19 chr1 233525659 233525966 -9138387 - AluSx SINE Alu -10 302 1 411 307 145 41 chr1 233525966 233526201 -9138152 - MLT1L LTR MaLR -144 471 177 256 276 0 0 chr1 233526537 233526595 -9137758 - L2 LINE L2 -1 3312 3255 2045 195 64 79 chr1 233526703 233527263 -9137090 + MLT2B3 LTR ERVL 3 554 0 182 242 220 11 chr1 233527264 233527355 -9136998 - MIR SINE MIR -29 233 124 1864 93 0 27 chr1 233527494 233527751 -9136602 + AluSx SINE Alu 40 289 -23 212 0 36 0 chr1 233527759 233527787 -9136566 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2434 61 3 0 chr1 233528781 233529074 -9135279 + AluY SINE Alu 1 294 -17 2115 105 3 14 chr1 233529432 233529746 -9134607 + AluSp SINE Alu 1 311 0 1051 197 217 16 chr1 233529799 233530103 -9134250 - MLT1A1 LTR MaLR 0 365 1 1137 154 29 19 chr1 233530744 233530952 -9133401 + Tigger2 DNA MER2_type 1 210 -2508 892 150 6 84 chr1 233530951 233531118 -9133235 + Tigger2 DNA MER2_type 2564 2717 -1 * 748 218 111 13 chr1 233531142 233531224 -9133129 - MIR SINE MIR 0 262 189 1609 199 7 20 chr1 233531224 233531520 -9132833 + AluJo SINE Alu 1 292 -20 748 218 111 13 chr1 233531520 233531671 -9132682 - MIR SINE MIR -73 189 6 1881 133 127 30 chr1 233531940 233532272 -9132081 - THE1B LTR MaLR 0 364 1 2297 112 0 0 chr1 233532423 233532718 -9131635 + AluSg SINE Alu 1 295 -15 1936 139 7 16 chr1 233533412 233533722 -9130631 - AluSx SINE Alu -5 307 1 1178 184 60 4 chr1 233533757 233533991 -9130362 + L1MA7 LINE L1 6002 6248 -43 453 234 28 0 chr1 233534010 233534117 -9130236 - MER58A DNA MER1_type 0 133 24 3017 164 28 63 chr1 233534124 233534627 -9129726 + MER6A DNA MER2_type 11 490 -375 3824 92 0 2 chr1 233534627 233535130 -9129223 - L1PB1 LINE L1 -1 6150 5649 3017 164 28 63 chr1 233535130 233535243 -9129110 + MER6A DNA MER2_type 490 605 0 771 211 62 0 chr1 233535255 233535416 -9128937 + MIR SINE MIR 1 171 -91 235 265 140 0 chr1 233535590 233535726 -9128627 - MIR SINE MIR -17 245 82 1946 141 3 33 chr1 233537286 233537591 -9126762 + AluSx SINE Alu 1 296 -16 887 158 0 23 chr1 233537950 233538106 -9126247 - FLAM_A SINE Alu 0 156 4 4264 199 39 30 chr1 233538713 233539567 -9124786 + MER21B LTR ERV1 2 862 -1 1285 133 37 133 chr1 233540318 233540641 -9123712 - AluYb8 SINE Alu -26 292 1 222 342 0 0 chr1 233543164 233543243 -9121110 - MIR SINE MIR -64 144 66 196 294 128 18 chr1 233543327 233543436 -9120917 + L3b LINE CR1 1313 1433 -150 1976 156 89 9 chr1 233543550 233543897 -9120456 + THE1C LTR MaLR 1 375 0 4769 137 30 65 chr1 233544000 233544633 -9119720 + MER4D LTR ERV1 1 594 -309 1528 150 45 54 chr1 233544633 233544946 -9119407 - AluJb SINE Alu -2 310 1 4769 137 30 65 chr1 233544946 233545236 -9119117 + MER4D LTR ERV1 594 892 -11 2203 190 126 37 chr1 233545878 233546440 -9117913 - LTR9 LTR ERV1 0 612 1 33 0 0 0 chr1 233547275 233547308 -9117045 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr1 233547342 233547367 -9116986 + (A)n Simple_repeat Simple_repeat 1 25 0 226 275 33 44 chr1 233547373 233547464 -9116889 + L3 LINE CR1 1481 1570 -7 265 247 62 0 chr1 233547911 233547992 -9116361 - HsTC2 DNA Tc2 -1808 90 5 2922 152 19 30 chr1 233548156 233548691 -9115662 - MER41B LTR ERV1 -9 600 100 183 42 0 0 chr1 233548872 233548896 -9115457 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 372 322 70 14 chr1 233548951 233549094 -9115259 - MIR3 SINE MIR -28 180 30 742 234 52 40 chr1 233549502 233549727 -9114626 - MLT1K LTR MaLR 0 588 361 2755 162 56 26 chr1 233549727 233550265 -9114088 - MER21A LTR ERV1 0 931 378 1285 117 60 75 chr1 233550274 233550540 -9113813 - MER21A LTR ERV1 -669 262 1 300 315 92 0 chr1 233550547 233550677 -9113676 - MLT1K LTR MaLR -231 357 216 2485 146 8 36 chr1 233550968 233551492 -9112861 + LTR9 LTR ERV1 1 610 -2 1465 156 0 33 chr1 233551658 233551902 -9112451 + AluJo SINE Alu 63 298 -14 2166 127 0 0 chr1 233552449 233552749 -9111604 - AluSg SINE Alu -10 300 1 2256 123 0 0 chr1 233552755 233553063 -9111290 - AluSx SINE Alu -2 310 3 706 137 98 0 chr1 233553168 233553270 -9111083 - FLAM_A SINE Alu -30 112 1 2111 109 0 0 chr1 233554661 233554936 -9109417 + AluSg SINE Alu 1 275 -35 22 0 0 0 chr1 233554948 233554970 -9109383 + GC_rich Low_complexity Low_complexity 1 22 0 2368 95 0 10 chr1 233555430 233555735 -9108618 - AluSp SINE Alu -11 302 1 261 333 39 31 chr1 233556223 233556352 -9108001 - MIR3 SINE MIR -67 141 12 304 331 89 0 chr1 233556462 233556586 -9107767 - L2 LINE L2 0 3272 3138 418 250 350 15 chr1 233557241 233557501 -9106852 + L2 LINE L2 1344 1690 -1624 370 292 217 11 chr1 233557536 233557692 -9106661 + L2 LINE L2 2960 3083 -230 321 26 0 0 chr1 233557692 233557730 -9106623 + (TG)n Simple_repeat Simple_repeat 1 38 0 370 292 217 11 chr1 233557730 233557854 -9106499 + L2 LINE L2 3083 3298 -15 2775 290 111 16 chr1 233557855 233559241 -9105112 + L2 LINE L2 1712 3238 -75 27 0 0 0 chr1 233559519 233559546 -9104807 + AT_rich Low_complexity Low_complexity 1 27 0 2289 109 3 0 chr1 233559546 233559857 -9104496 + AluSx SINE Alu 1 312 0 203 306 48 97 chr1 233559899 233560054 -9104299 - MIR SINE MIR -71 137 9 315 0 0 0 chr1 233562502 233562537 -9101816 + (TG)n Simple_repeat Simple_repeat 1 35 0 2501 119 30 25 chr1 233562672 233563034 -9101319 + THE1B LTR MaLR 1 364 0 350 285 28 42 chr1 233563072 233563216 -9101137 - MER97c DNA MER1_type? -948 142 1 356 278 81 64 chr1 233563820 233563993 -9100360 + MIR SINE MIR 1 176 -86 224 374 12 0 chr1 233564005 233564088 -9100265 - L2 LINE L2 -23 3249 3166 371 345 142 31 chr1 233564210 233564545 -9099808 - L2 LINE L2 0 3313 2912 2419 95 0 13 chr1 233564545 233564862 -9099491 + AluSq SINE Alu 1 313 0 371 345 142 31 chr1 233564862 233564984 -9099369 - L2 LINE L2 -401 2912 2805 2006 115 6 56 chr1 233565889 233566211 -9098142 + AluSx SINE Alu 1 306 -6 206 286 143 0 chr1 233566406 233566490 -9097863 - MIR3 SINE MIR -3 205 110 3243 208 66 27 chr1 233566580 233567218 -9097135 + Tigger6a DNA MER2_type 171 854 -743 918 139 0 0 chr1 233567218 233567347 -9097006 + FLAM_C SINE Alu 5 133 0 3243 208 66 27 chr1 233567347 233567587 -9096766 + Tigger6a DNA MER2_type 854 1083 0 776 257 238 11 chr1 233567826 233568192 -9096161 + L2 LINE L2 2529 2977 -337 845 112 0 0 chr1 233568281 233568397 -9095956 + FLAM_C SINE Alu 5 120 -23 460 270 72 59 chr1 233568421 233568728 -9095625 + L2 LINE L2 3003 3313 0 2272 116 0 3 chr1 233568909 233569220 -9095133 - AluSq SINE Alu -3 310 1 352 333 9 9 chr1 233569980 233570094 -9094259 - L2 LINE L2 -12 3260 3147 652 253 71 50 chr1 233570401 233570682 -9093671 - L2 LINE L2 0 3313 3027 288 111 0 0 chr1 233570736 233570781 -9093572 + (CA)n Simple_repeat Simple_repeat 2 46 0 322 308 0 11 chr1 233571245 233571336 -9093017 - L2 LINE L2 0 3313 3224 2241 99 22 19 chr1 233571346 233571658 -9092695 - AluSq SINE Alu 0 313 1 313 305 120 67 chr1 233571894 233571978 -9092375 - L2 LINE L2 -453 2861 2783 2237 114 3 0 chr1 233571978 233572285 -9092068 - AluSx SINE Alu -4 308 1 313 305 120 67 chr1 233572285 233572541 -9091812 - L2 LINE L2 -531 2783 2503 258 176 0 0 chr1 233572994 233573045 -9091308 + (TG)n Simple_repeat Simple_repeat 2 52 0 1915 167 0 3 chr1 233573900 233574212 -9090141 + AluSx SINE Alu 1 311 -1 233 203 85 0 chr1 233574310 233574369 -9089984 + MER5A DNA MER1_type 49 112 -77 247 242 154 11 chr1 233574565 233574656 -9089697 + MIR SINE MIR 96 199 -63 1994 85 0 0 chr1 233575319 233575565 -9088788 + AluSc SINE Alu 1 246 -63 200 238 0 0 chr1 233575684 233575726 -9088627 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2521 76 0 0 chr1 233575908 233576212 -9088141 - AluY SINE Alu -7 304 1 30 27 0 0 chr1 233577265 233577302 -9087051 + AT_rich Low_complexity Low_complexity 1 37 0 204 328 8 74 chr1 233577553 233577675 -9086678 - L2 LINE L2 -207 3065 2952 24 32 0 0 chr1 233578098 233578129 -9086224 + AT_rich Low_complexity Low_complexity 1 31 0 331 331 8 8 chr1 233578393 233578514 -9085839 + L2 LINE L2 2364 2484 -830 736 234 52 12 chr1 233579276 233579524 -9084829 - L1M4 LINE L1 -1737 4907 4650 2222 245 103 34 chr1 233579576 233581398 -9082955 - L1M4 LINE L1 -3766 2878 880 25 31 0 0 chr1 233581403 233581435 -9082918 + AT_rich Low_complexity Low_complexity 1 32 0 500 273 61 10 chr1 233581877 233582075 -9082278 - L1M4 LINE L1 -6318 224 17 288 326 109 0 chr1 233582946 233583084 -9081269 + MIR SINE MIR 69 221 -41 1450 224 124 31 chr1 233583364 233583847 -9080506 - LTR26 LTR ERV1 0 603 43 24 0 0 0 chr1 233583874 233583898 -9080455 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr1 233584672 233584699 -9079654 + (TG)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr1 233584702 233584726 -9079627 + AT_rich Low_complexity Low_complexity 1 24 0 2303 86 20 0 chr1 233587263 233587566 -9076787 + AluY SINE Alu 1 309 -2 523 277 105 13 chr1 233589568 233589806 -9074547 - MIR SINE MIR -1 261 2 405 202 165 9 chr1 233589928 233590037 -9074316 - MER63 DNA MER1_type -309 753 2 298 308 11 25 chr1 233590205 233590314 -9074039 - MIR SINE MIR -95 113 8 359 275 92 8 chr1 233591288 233591419 -9072934 - L2 LINE L2 -51 3262 3121 2096 139 10 0 chr1 233592353 233592655 -9071698 + AluSx SINE Alu 3 307 -5 205 248 44 0 chr1 233593036 233593149 -9071204 + (TA)n Simple_repeat Simple_repeat 1 118 0 3038 132 57 2 chr1 233593476 233593953 -9070400 - MER1A DNA MER1_type -26 503 1 209 167 56 14 chr1 233594335 233594407 -9069946 + (TA)n Simple_repeat Simple_repeat 1 75 0 * 305 187 39 50 chr1 233594380 233594562 -9069791 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 * 380 172 52 19 chr1 233594430 233594748 -9069605 + (TA)n Simple_repeat Simple_repeat 1 328 0 553 110 0 0 chr1 233594764 233594837 -9069516 + Tigger3(Golem) DNA MER2_type 36 108 -2921 * 4082 130 53 12 chr1 233594828 233595551 -9068802 + Tigger3(Golem) DNA MER2_type 2278 3029 0 353 75 19 0 chr1 233595577 233595630 -9068723 + (CA)n Simple_repeat Simple_repeat 1 54 0 40 49 0 0 chr1 233595651 233595712 -9068641 + AT_rich Low_complexity Low_complexity 1 61 0 404 277 100 72 chr1 233595851 233596601 -9067752 + L1M4 LINE L1 2248 3028 -3118 2095 136 0 0 chr1 233596601 233596902 -9067451 - AluSx SINE Alu -11 301 1 404 277 100 72 chr1 233596902 233597028 -9067325 + L1M4 LINE L1 3028 3149 -2997 360 297 127 49 chr1 233597378 233597991 -9066362 + L1M4 LINE L1 3589 4249 -1897 275 97 48 48 chr1 233598072 233598134 -9066219 + AluJo SINE Alu 87 148 -154 1260 154 5 10 chr1 233598145 233598353 -9066000 + AluJo SINE Alu 105 311 -1 1595 183 0 61 chr1 233598562 233598890 -9065463 - AluJb SINE Alu -1 311 4 27 49 0 0 chr1 233599885 233599926 -9064427 + AT_rich Low_complexity Low_complexity 1 41 0 402 132 0 0 chr1 233599929 233599982 -9064371 + AluJ/FRAM SINE Alu 232 284 -18 2419 92 0 0 chr1 233601284 233601587 -9062766 - AluSx SINE Alu -9 303 1 1098 211 54 19 chr1 233602699 233602960 -9061393 - MER58B DNA MER1_type -15 326 57 248 303 25 34 chr1 233603579 233603698 -9060655 + L2 LINE L2 2932 3049 -223 277 313 5 11 chr1 233603742 233603859 -9060494 + CT-rich Low_complexity Low_complexity 1 116 0 1877 127 14 0 chr1 233604309 233604601 -9059752 - L1PB1 LINE L1 0 6151 5856 2196 92 10 0 chr1 233604603 233604898 -9059455 + AluSq SINE Alu 1 298 -15 497 269 117 18 chr1 233605017 233605188 -9059165 - MIR SINE MIR -73 189 2 233 349 0 0 chr1 233605228 233605311 -9059042 - MER63 DNA MER1_type -1 1059 977 * 530 157 167 0 chr1 233605309 233605417 -9058936 - MER63 DNA MER1_type -309 753 2 180 77 0 0 chr1 233605838 233605864 -9058489 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 838 185 0 25 chr1 233606405 233606567 -9057786 - FRAM SINE Alu -6 170 13 25 0 0 0 chr1 233606567 233606592 -9057761 + AT_rich Low_complexity Low_complexity 1 25 0 2151 107 0 10 chr1 233606592 233606891 -9057462 + AluSc SINE Alu 1 296 -13 444 220 17 4 chr1 233606891 233607005 -9057348 - L1PB4 LINE L1 -12 6291 6046 231 325 81 25 chr1 233607368 233607491 -9056862 + MIR SINE MIR 34 162 -92 2177 115 0 0 chr1 233607615 233607920 -9056433 - AluSx SINE Alu -7 305 1 2290 74 0 35 chr1 233608734 233609045 -9055308 - AluY SINE Alu -11 300 1 23 54 0 0 chr1 233609652 233609689 -9054664 + AT_rich Low_complexity Low_complexity 1 37 0 692 202 0 16 chr1 233610090 233610214 -9054139 - FLAM_A SINE Alu -11 122 1 28 0 0 0 chr1 233611662 233611690 -9052663 + AT_rich Low_complexity Low_complexity 1 28 0 272 221 88 69 chr1 233612057 233612161 -9052192 + MIR SINE MIR 5 110 -98 22 0 0 0 chr1 233612685 233612707 -9051646 + AT_rich Low_complexity Low_complexity 1 22 0 2132 109 0 3 chr1 233613803 233614123 -9050230 + AluSx SINE Alu 1 319 0 2239 106 0 3 chr1 233614198 233614501 -9049852 + AluSx SINE Alu 1 302 -10 623 218 212 10 chr1 233614699 233614892 -9049461 + MIR SINE MIR 10 241 -21 383 156 0 26 chr1 233614939 233615016 -9049337 + L1ME LINE L1 486 560 -5970 1094 209 64 4 chr1 233615059 233615294 -9049059 - MLT1D LTR MaLR -5 500 252 253 254 0 0 chr1 233615306 233615373 -9048980 - MLT1D LTR MaLR -435 70 4 22 0 0 0 chr1 233616648 233616670 -9047683 + AT_rich Low_complexity Low_complexity 1 22 0 459 303 165 21 chr1 233616735 233617068 -9047285 - MLT1L LTR MaLR -89 526 146 226 308 128 8 chr1 233617384 233617501 -9046852 - L2 LINE L2 -5 3267 3137 409 175 0 0 chr1 233618450 233618513 -9045840 - AluS SINE Alu -8 292 230 180 77 0 0 chr1 233618521 233618547 -9045806 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 512 267 42 42 chr1 233618581 233618772 -9045581 + L2 LINE L2 3118 3308 -5 524 250 0 8 chr1 233618976 233619108 -9045245 - MER94 DNA DNA -3 131 1 1476 174 27 41 chr1 233619258 233619552 -9044801 - AluJo SINE Alu -18 294 5 1763 143 7 55 chr1 233620029 233620337 -9044016 + AluJb SINE Alu 1 293 -19 2219 107 0 7 chr1 233620918 233621226 -9043127 - AluSq SINE Alu -7 306 1 836 167 33 62 chr1 233621845 233621904 -9042449 - L1M4 LINE L1 -1352 4794 4735 2172 110 0 13 chr1 233621904 233622212 -9042141 - AluSc SINE Alu -5 304 1 836 167 33 62 chr1 233622212 233622362 -9041991 - L1M4 LINE L1 -1411 4735 4591 464 175 87 0 chr1 233622486 233622589 -9041764 + AluJb SINE Alu 201 312 0 1853 166 3 10 chr1 233623182 233623496 -9040857 + AluJb SINE Alu 1 312 0 1601 169 55 7 chr1 233624157 233624447 -9039906 + AluJo SINE Alu 1 304 -8 476 176 148 9 chr1 233625268 233625376 -9038977 - FLAM_A SINE Alu -9 133 11 241 235 12 47 chr1 233625836 233625921 -9038432 + L1ME LINE L1 966 1047 -4975 1138 274 114 47 chr1 233625929 233626987 -9037366 + L1ME LINE L1 1298 2283 -4257 524 182 8 30 chr1 233626987 233627119 -9037234 + L1MB8 LINE L1 6047 6175 -3 1138 274 114 47 chr1 233627119 233627406 -9036947 + L1ME LINE L1 2283 2549 -3991 1985 128 21 7 chr1 233627406 233627694 -9036659 + AluSx SINE Alu 1 292 -20 411 21 0 0 chr1 233627694 233627742 -9036611 + (TA)n Simple_repeat Simple_repeat 2 49 0 1138 274 114 47 chr1 233627742 233629108 -9035245 + L1ME LINE L1 2548 4202 -2338 23 78 0 0 chr1 233629140 233629191 -9035162 + AT_rich Low_complexity Low_complexity 1 51 0 309 174 30 36 chr1 233629397 233629492 -9034861 + (TA)n Simple_repeat Simple_repeat 1 96 -70 240 100 0 0 chr1 233629492 233629532 -9034821 + (CA)n Simple_repeat Simple_repeat 2 41 0 309 174 30 36 chr1 233629532 233629603 -9034750 + (TA)n Simple_repeat Simple_repeat 96 166 0 204 139 0 23 chr1 233629603 233629646 -9034707 + (CA)n Simple_repeat Simple_repeat 1 42 0 8437 156 50 2 chr1 233629688 233633176 -9031177 - L1PBa LINE L1 -1734 5128 1332 3292 227 118 14 chr1 233633193 233634242 -9030111 - L1PBa LINE L1 -5700 1163 6 2728 88 11 8 chr1 233634260 233634634 -9029719 - THE1C LTR MaLR 0 375 1 1814 254 67 20 chr1 233634866 233635452 -9028901 + L1ME1 LINE L1 5549 6161 -5 4721 0 43 0 chr1 233635677 233636142 -9028211 + L1MC1 LINE L1 5258 5693 -640 4721 148 40 10 chr1 233636142 233637020 -9027333 + L1MC1 LINE L1 5428 6331 -2 4721 0 43 0 chr1 233637020 233637182 -9027171 + L1MC1 LINE L1 5693 6331 -2 3164 208 52 68 chr1 233637902 233638125 -9026228 - MER21B LTR ERV1 -11 852 627 2122 127 0 7 chr1 233638125 233638425 -9025928 - AluSx SINE Alu -14 298 1 3164 208 52 68 chr1 233638425 233639049 -9025304 - MER21B LTR ERV1 -236 627 19 247 261 87 22 chr1 233639231 233639323 -9025030 - MER117 DNA MER1_type -96 101 4 269 169 0 51 chr1 233639331 233639390 -9024963 - MLT1I LTR MaLR -8 401 346 1660 194 0 31 chr1 233639850 233640170 -9024183 + AluJo SINE Alu 1 310 -2 759 314 213 22 chr1 233640723 233641744 -9022609 - L2 LINE L2 0 3313 2076 1594 183 3 36 chr1 233642676 233642977 -9021376 - AluJb SINE Alu -21 291 1 35 59 0 24 chr1 233643568 233643636 -9020717 + AT_rich Low_complexity Low_complexity 1 68 -15 1627 194 21 3 chr1 233643636 233643924 -9020429 + AluJo SINE Alu 1 293 -19 35 59 0 24 chr1 233643924 233643940 -9020413 + AT_rich Low_complexity Low_complexity 68 83 0 189 363 44 37 chr1 233644940 233645075 -9019278 + MIR3 SINE MIR 15 150 -58 224 226 0 19 chr1 233645861 233645914 -9018439 + L2 LINE L2 3217 3268 -4 599 260 95 48 chr1 233647637 233648008 -9016345 - L1MC/D LINE L1 -385 5736 5377 2471 88 0 0 chr1 233648211 233648518 -9015835 - AluSx SINE Alu -5 307 1 24 0 0 0 chr1 233648526 233648550 -9015803 + AT_rich Low_complexity Low_complexity 1 24 0 732 272 157 23 chr1 233649757 233650356 -9013997 + L1ME3A LINE L1 5256 5948 -222 2124 129 0 0 chr1 233650356 233650650 -9013703 - AluJb SINE Alu -18 294 1 249 377 63 17 chr1 233651647 233651822 -9012531 - MIR3 SINE MIR -23 185 3 360 295 0 45 chr1 233652141 233652253 -9012100 - MIR SINE MIR -123 139 33 520 138 0 12 chr1 233652806 233652886 -9011467 + MER41C LTR ERV1 1 79 -475 350 85 0 0 chr1 233652878 233652925 -9011428 + MER41C LTR ERV1 25 71 -483 * 2970 118 79 6 chr1 233652926 233653392 -9010961 + MER41C LTR ERV1 25 524 -30 7232 114 130 121 chr1 233653392 233655086 -9009267 - pTR5 LTR ERV1 0 2438 56 367 280 0 36 chr1 233655186 233655220 -9009133 + Charlie7 DNA MER1_type 40 74 -2538 2986 96 45 5 chr1 233655220 233655667 -9008686 + MER4C LTR ERV1 1 465 0 367 280 0 36 chr1 233655667 233655800 -9008553 + Charlie7 DNA MER1_type 74 201 -2411 700 271 187 12 chr1 233656028 233656360 -9007993 + Charlie7 DNA MER1_type 354 743 -1869 1664 168 11 7 chr1 233656401 233656687 -9007666 - AluJb SINE Alu -15 297 11 1014 251 136 55 chr1 233656703 233657246 -9007107 + Charlie7 DNA MER1_type 830 1416 -1196 1405 252 116 22 chr1 233657419 233657971 -9006382 + Charlie7 DNA MER1_type 1740 2343 -269 27 0 0 0 chr1 233658027 233658054 -9006299 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 233658083 233658104 -9006249 + AT_rich Low_complexity Low_complexity 1 21 0 1657 199 67 31 chr1 233658148 233658539 -9005814 + MLT1D LTR MaLR 1 405 -100 1122 161 22 123 chr1 233758539 233758863 -8905490 - MER7A DNA MER2_type -56 290 2 642 242 26 0 chr1 233759307 233759460 -8904893 + FAM SINE Alu 1 157 -18 1691 179 7 0 chr1 233759487 233759772 -8904581 - AluJo SINE Alu -25 287 1 812 255 103 21 chr1 233759985 233760275 -8904078 - MER5C DNA MER1_type 0 324 11 225 0 0 0 chr1 233760504 233760529 -8903824 + (T)n Simple_repeat Simple_repeat 1 25 0 630 329 64 9 chr1 233760905 233761248 -8903105 + L2 LINE L2 2952 3313 0 390 314 24 30 chr1 233762464 233762633 -8901720 + L2 LINE L2 2916 3083 -189 234 0 0 0 chr1 233763098 233763124 -8901229 + (A)n Simple_repeat Simple_repeat 1 26 0 6083 86 9 20 chr1 233763332 233764239 -8900114 - L1MA1 LINE L1 0 6302 5406 473 235 70 75 chr1 233764600 233764787 -8899566 - MIR SINE MIR 0 262 77 350 188 176 0 chr1 233766928 233767013 -8897340 + L2 LINE L2 3197 3296 -17 314 327 176 26 chr1 233767054 233767553 -8896800 - L2 LINE L2 -454 2860 2287 343 300 147 34 chr1 233768003 233768296 -8896057 - L1ME4a LINE L1 -5 6116 5791 1696 157 7 56 chr1 233768723 233769029 -8895324 + AluJo SINE Alu 1 291 -21 673 275 128 0 chr1 233769850 233770061 -8894292 - MIR SINE MIR -11 251 14 734 158 14 0 chr1 233770441 233770587 -8893766 - L1MA7 LINE L1 -1 6290 6143 2461 87 3 3 chr1 233771048 233771360 -8892993 + AluSx SINE Alu 1 312 0 2331 94 0 0 chr1 233771931 233772228 -8892125 + AluSc SINE Alu 1 297 -12 599 264 23 40 chr1 233773049 233773223 -8891130 + MIR SINE MIR 10 180 -82 711 278 24 60 chr1 233773404 233773656 -8890697 - MIR SINE MIR 0 262 20 440 301 72 42 chr1 233774603 233774796 -8889557 - MIR SINE MIR -39 223 25 287 314 42 42 chr1 233774782 233774900 -8889453 + L2 LINE L2 3155 3272 0 * 1607 143 0 0 chr1 233774957 233775194 -8889159 + AluSx SINE Alu 1 237 -75 204 40 0 0 chr1 233775199 233775224 -8889129 + (A)n Simple_repeat Simple_repeat 1 25 0 300 111 0 0 chr1 233775919 233775964 -8888389 + (TA)n Simple_repeat Simple_repeat 1 45 0 447 305 76 35 chr1 233777065 233777262 -8887091 + MIR SINE MIR 8 212 -50 763 200 7 15 chr1 233778019 233778570 -8885783 + CT-rich Low_complexity Low_complexity 1 546 0 279 258 0 16 chr1 233778570 233778632 -8885721 + polypyrimidine Low_complexity Low_complexity 3 63 0 1979 119 7 26 chr1 233778673 233778976 -8885377 - AluSx SINE Alu -15 297 1 1114 319 116 17 chr1 233778977 233779849 -8884504 + L2 LINE L2 2099 3054 -218 1341 77 66 0 chr1 233779954 233780137 -8884216 + MER30 DNA MER1_type 1 195 -35 202 129 0 0 chr1 233780156 233780187 -8884166 + L2 LINE L2 3191 3221 -92 906 163 116 0 chr1 233780200 233780372 -8883981 - L1MC1 LINE L1 -5 6328 6137 256 313 51 80 chr1 233780498 233780773 -8883580 + L2 LINE L2 2371 2637 -677 7210 182 10 24 chr1 233780832 233783218 -8881135 - L1PB4 LINE L1 -9 6147 3795 1579 168 13 52 chr1 233783216 233783311 -8881042 + L1MB7 LINE L1 3401 3498 -2648 * 2109 130 0 3 chr1 233783311 233783603 -8880750 + AluSx SINE Alu 1 291 -21 1579 168 13 52 chr1 233783603 233783893 -8880460 + L1MB7 LINE L1 3498 3771 -2375 236 281 34 22 chr1 233783893 233783982 -8880371 + L2 LINE L2 2661 2750 -564 2133 109 0 45 chr1 233783982 233784294 -8880059 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr1 233784294 233784322 -8880031 + AT_rich Low_complexity Low_complexity 1 28 0 1433 44 22 0 chr1 233784536 233784718 -8879635 - L1PA4 LINE L1 -1 6154 5969 1441 87 48 44 chr1 233784757 233784986 -8879367 + MER30 DNA MER1_type 1 230 0 180 167 0 0 chr1 233785207 233785237 -8879116 + L2 LINE L2 3284 3313 0 25 0 0 0 chr1 233785662 233785687 -8878666 + AT_rich Low_complexity Low_complexity 1 25 0 3409 221 23 42 chr1 233785710 233786012 -8878341 + L1MB7 LINE L1 5070 5376 -808 2019 142 0 7 chr1 233786012 233786315 -8878038 + AluSx SINE Alu 1 301 -11 3409 221 23 42 chr1 233786315 233787066 -8877287 + L1MB7 LINE L1 5376 6107 -77 301 133 0 0 chr1 233787211 233787256 -8877097 - MLT2D LTR ERVL -4 410 366 282 125 0 0 chr1 233787268 233787316 -8877037 + (TA)n Simple_repeat Simple_repeat 1 48 0 568 206 16 24 chr1 233787338 233787464 -8876889 - MLT2D LTR ERVL -172 242 118 321 130 0 0 chr1 233787487 233787541 -8876812 - L1PA16 LINE L1 -16 6150 6097 2021 210 42 9 chr1 233787565 233787999 -8876354 - L1PA16 LINE L1 -37 6129 5682 1570 134 8 4 chr1 233787999 233788237 -8876116 - AluSg/x SINE Alu -6 306 68 2048 138 0 13 chr1 233788254 233788558 -8875795 + AluSq SINE Alu 4 303 -10 204 179 0 0 chr1 233788723 233788762 -8875591 + (TATG)n Simple_repeat Simple_repeat 1 39 0 339 25 0 0 chr1 233789382 233789422 -8874931 + (TG)n Simple_repeat Simple_repeat 2 41 0 335 227 83 45 chr1 233790315 233790441 -8873912 + MIR SINE MIR 18 138 -70 1779 212 79 37 chr1 233791337 233791931 -8872422 - MER20B DNA MER1_type 0 783 165 27 81 0 0 chr1 233793170 233793232 -8871121 + AT_rich Low_complexity Low_complexity 1 62 0 1259 105 38 0 chr1 233793868 233794077 -8870276 + L1MA5 LINE L1 6084 6300 0 226 327 44 9 chr1 233794373 233794486 -8869867 + MIR SINE MIR 28 144 -118 345 47 0 0 chr1 233794998 233795041 -8869312 + (CA)n Simple_repeat Simple_repeat 1 43 0 1184 175 13 8 chr1 233795619 233795853 -8868500 + MER46A DNA MER2_type 2 236 0 198 71 0 0 chr1 233796037 233796065 -8868288 + (TCCA)n Simple_repeat Simple_repeat 4 31 0 216 0 0 0 chr1 233796180 233796204 -8868149 + (TCTCCC)n Simple_repeat Simple_repeat 1 24 0 7555 44 11 10 chr1 233796205 233797668 -8866685 + SVA Other Other 2 1386 0 229 349 18 28 chr1 233799016 233799125 -8865228 + MIR3 SINE MIR 14 121 -87 1251 116 0 0 chr1 233799618 233799782 -8864571 - AluSg/x SINE Alu -14 296 133 972 201 68 26 chr1 233800905 233801119 -8863234 + MER57A LTR ERV1 160 386 -17 2348 98 3 0 chr1 233801119 233801426 -8862927 - AluSg SINE Alu -2 308 1 972 201 68 26 chr1 233801426 233801445 -8862908 + MER57A LTR ERV1 386 403 0 232 263 81 20 chr1 233801450 233801549 -8862804 + MIR SINE MIR 151 255 -7 1676 168 40 34 chr1 233801829 233802156 -8862197 + THE1B LTR MaLR 11 339 -25 572 254 8 8 chr1 233802156 233802286 -8862067 + L2 LINE L2 3184 3313 0 493 269 36 58 chr1 233802838 233803061 -8861292 - MIR SINE MIR -30 232 15 296 333 50 0 chr1 233803613 233803712 -8860641 - MIR SINE MIR -140 122 19 22 0 0 0 chr1 233804378 233804400 -8859953 + AT_rich Low_complexity Low_complexity 1 22 0 2529 43 0 0 chr1 233805043 233805348 -8859005 - L1PA7 LINE L1 -7 6147 5843 28 0 0 0 chr1 233805526 233805554 -8858799 + AT_rich Low_complexity Low_complexity 1 28 0 310 260 78 52 chr1 233806163 233806317 -8858036 + HAL1 LINE L1 1035 1192 -1315 21 0 0 0 chr1 233806385 233806406 -8857947 + AT_rich Low_complexity Low_complexity 1 21 0 373 141 70 0 chr1 233806731 233806802 -8857551 - L1PA16 LINE L1 0 6166 6091 1674 162 20 26 chr1 233807845 233808148 -8856205 + AluJo SINE Alu 1 301 -11 22 0 0 0 chr1 233808361 233808383 -8855970 + AT_rich Low_complexity Low_complexity 1 22 0 38 51 0 0 chr1 233808843 233808902 -8855451 + AT_rich Low_complexity Low_complexity 1 59 0 209 132 26 0 chr1 233810382 233810420 -8853933 + (TTA)n Simple_repeat Simple_repeat 3 41 0 22 80 0 0 chr1 233811266 233811316 -8853037 + AT_rich Low_complexity Low_complexity 1 50 0 1995 157 57 27 chr1 233812441 233812981 -8851372 + MLT2A2 LTR ERVL 2 554 0 2361 61 10 0 chr1 233814496 233814789 -8849564 - AluY SINE Alu -15 296 1 218 295 205 8 chr1 233815588 233815710 -8848643 - MIR SINE MIR -19 243 98 211 304 167 29 chr1 233817749 233817851 -8846502 + L2 LINE L2 3157 3272 0 418 337 57 16 chr1 233819162 233819355 -8844998 - MIR SINE MIR -34 228 28 1138 128 0 0 chr1 233820195 233820351 -8844002 - AluSg/x SINE Alu -21 291 136 2460 68 0 3 chr1 233820368 233820676 -8843677 + AluY SINE Alu 1 307 -4 191 269 75 30 chr1 233821333 233821400 -8842953 + L3 LINE CR1 1378 1447 -130 2099 119 3 10 chr1 233821492 233821795 -8842558 - AluSq SINE Alu -12 301 1 1902 164 0 0 chr1 233822013 233822318 -8842035 + AluY SINE Alu 1 305 -6 1834 119 18 3 chr1 233822633 233822919 -8841434 + AluY SINE Alu 3 292 -19 195 232 18 18 chr1 233823889 233823945 -8840408 + L2 LINE L2 3258 3313 0 236 203 81 0 chr1 233824592 233824666 -8839687 - MER112 DNA MER1_type -96 164 85 2150 134 0 6 chr1 233824697 233825011 -8839342 + AluSx SINE Alu 1 372 0 475 33 0 0 chr1 233825011 233825071 -8839282 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 233 259 19 0 chr1 233826041 233826095 -8838258 + MIR SINE MIR 198 252 -10 21 0 0 0 chr1 233827840 233827861 -8836492 + AT_rich Low_complexity Low_complexity 1 21 0 2431 242 29 30 chr1 233829367 233830057 -8834296 - L1ME1 LINE L1 -33 6133 5445 277 277 46 54 chr1 233830172 233830302 -8834051 - L2 LINE L2 -1 3312 3184 41 66 0 0 chr1 233830337 233830413 -8833940 + AT_rich Low_complexity Low_complexity 1 76 0 982 288 45 27 chr1 233830466 233830981 -8833372 - L2 LINE L2 -193 3120 2600 379 110 27 14 chr1 233831393 233831466 -8832887 + MADE1 DNA Mariner 5 78 -2 5809 124 30 10 chr1 233831799 233832769 -8831584 - L1MA8 LINE L1 -5 6286 5297 196 335 97 26 chr1 233833248 233833403 -8830950 + MIR SINE MIR 67 232 -30 21 71 0 0 chr1 233833738 233833780 -8830573 + AT_rich Low_complexity Low_complexity 1 42 0 2234 104 0 7 chr1 233833840 233834149 -8830204 + AluY SINE Alu 1 307 -4 24 32 0 0 chr1 233834308 233834339 -8830014 + AT_rich Low_complexity Low_complexity 1 31 0 2484 44 3 19 chr1 233834603 233834919 -8829434 + AluY SINE Alu 1 311 0 362 248 18 9 chr1 233836847 233836960 -8827393 - L1M4 LINE L1 -2916 3230 3117 23 33 0 0 chr1 233837133 233837163 -8827190 + AT_rich Low_complexity Low_complexity 1 30 0 368 219 0 0 chr1 233837163 233837245 -8827108 - L1PB4 LINE L1 -9 6147 6066 265 213 49 0 chr1 233837255 233837316 -8827037 - L1PB4 LINE L1 -70 6086 6023 3328 18 0 0 chr1 233837934 233838317 -8826036 + L1PA3 LINE L1 5773 6155 0 338 237 0 0 chr1 233839238 233839314 -8825039 + HsTC2 DNA Tc2 225 300 -1598 1742 158 72 0 chr1 233839664 233839955 -8824398 + AluSx SINE Alu 1 312 0 180 219 0 0 chr1 233841536 233841577 -8822776 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 1423 175 39 67 chr1 233842013 233842404 -8821949 - L1MA10 LINE L1 -7 6327 5952 2314 109 0 10 chr1 233842845 233843211 -8821142 + AluSg SINE Alu 1 363 0 1758 152 76 23 chr1 233843589 233843670 -8820683 - MER46B DNA MER2_type -2495 236 161 1017 224 88 51 chr1 233843670 233844001 -8820352 + MER2 DNA MER2_type 1 343 -1 1758 152 76 23 chr1 233844001 233844261 -8820092 - MER46B DNA MER2_type -2570 161 2 1661 192 9 0 chr1 233844451 233844774 -8819579 - L1MD1 LINE L1 -16 6226 5901 771 142 0 7 chr1 233844807 233844948 -8819405 - L1MA7 LINE L1 -7 6284 6145 6069 221 118 17 chr1 233845002 233848247 -8816106 - L1MDa LINE L1 -2848 3692 14 351 324 28 21 chr1 233848808 233848953 -8815400 + LTR67 LTR ERVL 408 553 -4 302 215 236 103 chr1 233849351 233849499 -8814854 + MLT1L LTR MaLR 1 128 -487 2373 116 28 3 chr1 233849499 233849854 -8814499 + THE1B LTR MaLR 1 364 0 302 215 236 103 chr1 233849854 233849947 -8814406 + MLT1L LTR MaLR 128 274 -341 345 273 64 0 chr1 233850024 233850134 -8814219 + MLT1L LTR MaLR 386 502 -113 234 288 22 125 chr1 233850533 233850717 -8813636 + L2 LINE L2 2886 3050 -222 1694 172 7 17 chr1 233851077 233851379 -8812974 + AluJo SINE Alu 1 299 -13 1377 144 35 4 chr1 233852651 233852880 -8811473 - MER46A DNA MER2_type 0 236 1 196 234 43 0 chr1 233852971 233853018 -8811335 - L3 LINE CR1 -1412 165 117 402 200 22 0 chr1 233853020 233853110 -8811243 + AluSg/x SINE Alu 217 308 -2 489 290 57 0 chr1 233853154 233853278 -8811075 - L2 LINE L2 0 3272 3142 2637 186 38 35 chr1 233854116 233854722 -8809631 - L1MB8 LINE L1 -6 6172 5565 23 33 0 0 chr1 233854727 233854757 -8809596 + AT_rich Low_complexity Low_complexity 1 30 0 205 229 62 115 chr1 233855142 233855238 -8809115 + MIR3 SINE MIR 111 201 -7 355 298 95 83 chr1 233856632 233856903 -8807450 - L2 LINE L2 -42 3271 2994 1617 132 66 45 chr1 233856903 233857191 -8807162 + AluSx SINE Alu 1 294 -18 355 298 95 83 chr1 233857191 233857245 -8807108 - L2 LINE L2 -319 2994 2942 416 188 24 12 chr1 233857265 233857350 -8807003 + AluSg/x SINE Alu 205 290 -19 258 105 0 0 chr1 233857362 233857400 -8806953 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 188 163 23 0 chr1 233857406 233857449 -8806904 + A-rich Low_complexity Low_complexity 4 47 0 189 0 0 0 chr1 233857593 233857614 -8806739 + (A)n Simple_repeat Simple_repeat 1 21 0 200 368 118 17 chr1 233857678 233857706 -8806647 + L2 LINE L2 1817 1841 -1473 1635 148 25 25 chr1 233857706 233857990 -8806363 - AluJb SINE Alu -28 284 1 200 368 118 17 chr1 233857990 233858366 -8805987 + L2 LINE L2 1841 2262 -1052 227 217 58 0 chr1 233858378 233858447 -8805906 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 330 248 196 0 chr1 233858455 233858588 -8805765 - MIR SINE MIR -27 235 77 26886 41 5 3 chr1 233858825 233862952 -8801401 - L1PA5 LINE L1 -2 6152 2016 185 369 121 29 chr1 233863446 233863752 -8800601 + L2 LINE L2 2642 2975 -339 7092 141 23 21 chr1 233864605 233866500 -8797853 - L1MA6 LINE L1 -5 6997 5106 2189 77 49 7 chr1 233866500 233866787 -8797566 - AluSx SINE Alu -13 299 1 7092 141 23 21 chr1 233866787 233867151 -8797202 - L1MA6 LINE L1 -1896 5106 4744 5783 227 64 12 chr1 233867150 233868746 -8795607 - L1MA6 LINE L1 -2613 4235 2718 * 2096 119 28 0 chr1 233868746 233869031 -8795322 + AluSc SINE Alu 1 293 -16 5783 227 64 12 chr1 233869031 233870477 -8793876 - L1MA6 LINE L1 -4130 2718 1349 227 235 20 0 chr1 233870491 233870542 -8793811 - L1MA6 LINE L1 -5416 1433 1382 186 118 0 0 chr1 233871171 233871205 -8793148 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr1 233871372 233871397 -8792956 + (A)n Simple_repeat Simple_repeat 1 25 0 460 251 7 25 chr1 233872107 233872258 -8792095 - MIR SINE MIR -67 141 1 214 270 14 27 chr1 233873094 233873168 -8791185 + (TA)n Simple_repeat Simple_repeat 1 73 0 2233 120 0 0 chr1 233873245 233873545 -8790808 - AluSx SINE Alu -12 300 1 2084 139 0 0 chr1 233873639 233873934 -8790419 - AluSx SINE Alu -17 295 1 1039 187 20 25 chr1 233874639 233874842 -8789511 + MER20 DNA MER1_type 18 219 0 558 108 0 0 chr1 233875045 233875128 -8789225 + (GGA)n Simple_repeat Simple_repeat 2 84 0 223 295 130 31 chr1 233876577 233876681 -8787672 + MIR SINE MIR 34 146 -62 2272 109 0 0 chr1 233877363 233877656 -8786697 - AluSx SINE Alu -19 293 1 22 80 0 0 chr1 233878797 233878847 -8785506 + AT_rich Low_complexity Low_complexity 1 50 0 189 304 0 0 chr1 233879056 233879102 -8785251 - L2 LINE L2 0 3313 3268 2144 124 17 0 chr1 233879192 233879491 -8784862 + AluSx SINE Alu 1 304 -8 461 313 109 16 chr1 233879629 233879821 -8784532 + MIR SINE MIR 13 222 -40 25 31 0 0 chr1 233880312 233880344 -8784009 + AT_rich Low_complexity Low_complexity 1 32 0 396 279 121 24 chr1 233880829 233880994 -8783359 - MIR SINE MIR -61 201 21 756 216 31 0 chr1 233881000 233881162 -8783191 - MER58B DNA MER1_type -2 339 173 705 164 39 0 chr1 233881171 233881299 -8783054 + AluJo SINE Alu 1 133 -169 1161 155 5 26 chr1 233881366 233881560 -8782793 + AluJo SINE Alu 120 309 -3 569 280 0 7 chr1 233881647 233881797 -8782556 - L2 LINE L2 -5 3308 3160 287 265 69 20 chr1 233882713 233882815 -8781538 - MIR SINE MIR -108 154 48 4876 125 39 12 chr1 233882823 233883269 -8781084 + L1PA16 LINE L1 5196 5628 -538 243 0 0 0 chr1 233883269 233883296 -8781057 + (TA)n Simple_repeat Simple_repeat 2 28 0 4876 125 39 12 chr1 233883296 233883783 -8780570 + L1PA16 LINE L1 5628 6155 -11 2183 129 0 22 chr1 233883810 233884128 -8780225 + AluSq SINE Alu 1 311 -2 188 248 248 34 chr1 233884197 233884314 -8780039 - MIR3 SINE MIR -6 202 61 1545 169 21 24 chr1 233885203 233885535 -8778818 - MLT1B LTR MaLR 0 390 60 2262 109 0 3 chr1 233885762 233886066 -8778287 + AluSq SINE Alu 1 303 -10 2348 89 7 0 chr1 233886670 233886974 -8777379 + AluSq SINE Alu 7 312 -1 374 240 58 52 chr1 233887948 233888102 -8776251 + L2 LINE L2 1548 1702 -1612 2106 122 0 24 chr1 233888110 233888406 -8775947 + AluSx SINE Alu 4 292 -20 272 239 22 22 chr1 233888538 233888630 -8775723 - MLT1D LTR MaLR -131 374 283 195 42 0 0 chr1 233888639 233888663 -8775690 + (TC)n Simple_repeat Simple_repeat 1 24 0 474 33 0 0 chr1 233888665 233888725 -8775628 + (CA)n Simple_repeat Simple_repeat 2 61 0 937 166 15 40 chr1 233888725 233888924 -8775429 - MLT1D LTR MaLR -311 194 1 998 285 55 5 chr1 233888984 233889422 -8774931 - L1ME LINE L1 -392 5778 5319 690 283 102 48 chr1 233889570 233890426 -8773927 - L1ME LINE L1 -1088 5058 4140 1863 213 106 80 chr1 233891223 233891847 -8772506 - MLT1E1 LTR MaLR -7 647 8 1845 92 4 12 chr1 233892381 233892630 -8771723 - AluY SINE Alu -10 301 55 1967 121 13 10 chr1 233893318 233893616 -8770737 + AluSq SINE Alu 1 299 -14 238 292 52 44 chr1 233893765 233893921 -8770432 + MIR SINE MIR 42 198 -64 184 149 119 75 chr1 233894267 233894334 -8770019 + L2 LINE L2 1908 1977 -1337 2525 56 0 3 chr1 233895019 233895325 -8769028 - AluY SINE Alu -6 305 1 222 246 115 0 chr1 233896446 233896507 -8767846 - MIR SINE MIR -186 76 9 927 90 116 79 chr1 233896622 233896811 -8767542 + MER1B DNA MER1_type 139 334 -5 1537 159 110 61 chr1 233896984 233897411 -8766942 + LTR7 LTR ERV1 1 448 -2 23 0 0 0 chr1 233897440 233897463 -8766890 + AT_rich Low_complexity Low_complexity 1 23 0 496 265 88 13 chr1 233897482 233897572 -8766781 - MER112 DNA MER1_type 0 256 174 2168 126 0 0 chr1 233897572 233897874 -8766479 + AluSx SINE Alu 1 302 -10 496 265 88 13 chr1 233897874 233898021 -8766332 - MER112 DNA MER1_type -82 174 1 200 227 0 0 chr1 233898723 233898767 -8765586 + T-rich Low_complexity Low_complexity 1 44 0 2034 119 6 54 chr1 233898810 233899164 -8765189 + MER1B DNA MER1_type 1 337 0 1407 231 24 3 chr1 233899408 233899574 -8764779 - AluJo SINE Alu -16 296 120 216 0 0 0 chr1 233899574 233899598 -8764755 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1407 231 24 3 chr1 233899598 233899721 -8764632 - AluJo SINE Alu -192 120 1 245 324 66 29 chr1 233901186 233901322 -8763031 + MIR SINE MIR 47 187 -75 233 83 0 42 chr1 233903361 233903409 -8760944 + L1MA3 LINE L1 6260 6305 0 2099 121 0 20 chr1 233903413 233903718 -8760635 + AluSx SINE Alu 1 299 -13 27 49 0 0 chr1 233904180 233904221 -8760132 + AT_rich Low_complexity Low_complexity 1 41 0 1788 171 3 14 chr1 233905164 233905456 -8758897 - AluJo SINE Alu -23 289 1 22 70 0 0 chr1 233905502 233905545 -8758808 + AT_rich Low_complexity Low_complexity 1 43 0 295 257 73 59 chr1 233906289 233906425 -8757928 + MIR SINE MIR 70 207 -55 23 33 0 0 chr1 233906454 233906484 -8757869 + AT_rich Low_complexity Low_complexity 1 30 0 2334 93 0 0 chr1 233906490 233906781 -8757572 + AluSg SINE Alu 1 291 -19 2096 152 37 37 chr1 233906957 233907506 -8756847 + MLT2A2 LTR ERVL 1 554 0 279 323 75 3 chr1 233907520 233907706 -8756647 + MIR SINE MIR 2 254 -8 2549 54 0 0 chr1 233907827 233908125 -8756228 + AluY SINE Alu 1 298 -13 608 110 0 10 chr1 233908652 233908752 -8755601 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 1494 181 66 0 chr1 233908752 233909011 -8755342 - AluJo SINE Alu -27 285 10 2195 102 3 0 chr1 233909249 233909534 -8754819 + AluSx SINE Alu 3 288 -24 4506 118 52 60 chr1 233911235 233911909 -8752444 - L1PA16 LINE L1 -9 6157 5492 2190 129 0 0 chr1 233911909 233912204 -8752149 - AluSq SINE Alu -18 295 1 4506 118 52 60 chr1 233912204 233912459 -8751894 - L1PA16 LINE L1 -674 5492 5236 586 235 34 7 chr1 233912459 233912608 -8751745 + MER58A DNA MER1_type 43 195 -29 407 130 0 14 chr1 233912608 233912677 -8751676 + MLT1A1 LTR MaLR 1 68 -297 690 185 117 52 chr1 233912677 233913059 -8751294 - LTR7 LTR ERV1 0 450 1 1348 175 63 7 chr1 233913059 233913345 -8751008 + MLT1A1 LTR MaLR 64 365 0 321 109 0 0 chr1 233914427 233914482 -8749871 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 2139 110 0 0 chr1 233914482 233914764 -8749589 - AluSx SINE Alu -30 282 1 342 253 12 0 chr1 233914765 233914848 -8749505 - MIR SINE MIR -36 226 143 338 351 6 24 chr1 233915917 233916082 -8748271 + MIR3 SINE MIR 44 205 -3 2383 151 31 66 chr1 233916485 233917028 -8747325 + LTR9 LTR ERV1 1 524 -88 686 150 20 41 chr1 233917056 233917203 -8747150 + LTR9 LTR ERV1 458 601 -11 316 364 54 0 chr1 233917651 233917780 -8746573 - L2 LINE L2 0 3272 3137 817 158 125 0 chr1 233918461 233918613 -8745740 - FAM SINE Alu 0 175 5 189 0 0 0 chr1 233918626 233918647 -8745706 + (T)n Simple_repeat Simple_repeat 1 21 0 273 310 121 37 chr1 233919075 233919211 -8745142 + MIR SINE MIR 1 148 -60 294 221 116 11 chr1 233919386 233919481 -8744872 - MER103 DNA DNA -51 115 11 2183 129 0 3 chr1 233919748 233920057 -8744296 + AluSg SINE Alu 1 308 -2 306 202 40 23 chr1 233920639 233920812 -8743541 + (TA)n Simple_repeat Simple_repeat 1 176 0 536 293 93 64 chr1 233920857 233921438 -8742915 + L1 LINE L1 2690 3287 -2859 1585 206 3 7 chr1 233921441 233921728 -8742625 + AluJb SINE Alu 3 288 -24 800 185 64 108 chr1 233921961 233922210 -8742143 + MER7A DNA MER2_type 4 239 -107 431 221 158 20 chr1 233922258 233922413 -8741940 + Tigger3(Golem) DNA MER2_type 2869 3029 0 35 83 0 0 chr1 233922522 233922606 -8741747 + AT_rich Low_complexity Low_complexity 1 84 0 285 98 0 0 chr1 233922789 233922830 -8741523 + (TG)n Simple_repeat Simple_repeat 2 42 0 240 257 67 9 chr1 233922934 233923039 -8741314 + L1MC/D LINE L1 5657 5767 -354 643 229 0 0 chr1 233924216 233924347 -8740006 - FLAM_C SINE Alu -2 131 1 331 217 0 0 chr1 233924347 233924416 -8739937 - L1MB1 LINE L1 -201 5967 5899 428 260 110 0 chr1 233924568 233924695 -8739658 - L2 LINE L2 -4 3309 3169 21 36 0 0 chr1 233926150 233926178 -8738175 + AT_rich Low_complexity Low_complexity 1 28 0 294 247 62 0 chr1 233927039 233927120 -8737233 - MIR SINE MIR -48 214 129 249 234 16 16 chr1 233927300 233927364 -8736989 - L2 LINE L2 0 3313 3250 352 265 54 48 chr1 233927512 233927659 -8736694 + MLT1L LTR MaLR 120 267 -348 226 203 0 34 chr1 233927901 233927960 -8736393 + MLT1K LTR MaLR 514 570 -18 21 0 0 0 chr1 233928284 233928305 -8736048 + AT_rich Low_complexity Low_complexity 1 21 0 491 281 15 7 chr1 233928518 233928653 -8735700 - AluJo SINE Alu -92 220 85 238 360 70 0 chr1 233929238 233929324 -8735029 - L2 LINE L2 -12 3260 3169 2207 113 0 3 chr1 233929457 233929758 -8734595 - AluSx SINE Alu -10 302 3 828 256 78 7 chr1 233930096 233930496 -8733857 + LTR40b LTR ERVL 7 519 0 914 131 0 0 chr1 233930984 233931106 -8733247 - FLAM_C SINE Alu -16 127 6 1416 125 0 9 chr1 233932326 233932542 -8731811 - L1PA15 LINE L1 -13 6152 5939 22 0 0 0 chr1 233934233 233934255 -8730098 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 233934501 233934524 -8729829 + AT_rich Low_complexity Low_complexity 1 23 0 204 103 62 31 chr1 233935328 233935425 -8728928 + (TA)n Simple_repeat Simple_repeat 2 101 0 235 243 54 20 chr1 233935437 233935585 -8728768 + (TATAG)n Simple_repeat Simple_repeat 2 154 0 * 356 211 22 54 chr1 233935495 233935753 -8728600 + (CTATA)n Simple_repeat Simple_repeat 1 249 0 330 26 0 0 chr1 233935789 233935828 -8728525 + (CA)n Simple_repeat Simple_repeat 2 40 0 303 85 0 0 chr1 233935888 233935935 -8728418 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr1 233936092 233936120 -8728233 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr1 233936269 233936296 -8728057 + AT_rich Low_complexity Low_complexity 1 27 0 1882 148 0 32 chr1 233936307 233936617 -8727736 - AluSx SINE Alu -12 300 1 496 134 0 37 chr1 233936712 233936794 -8727559 - AluS SINE Alu -233 79 1 2953 221 39 38 chr1 233937305 233938130 -8726223 + L1MEc LINE L1 49 874 -5522 1632 219 61 82 chr1 233938136 233938761 -8725592 + L1MEc LINE L1 1575 2186 -4210 2571 238 69 8 chr1 233938884 233939674 -8724679 + L1MEc LINE L1 2160 2997 -3218 1823 137 7 4 chr1 233939680 233939951 -8724402 + AluSx SINE Alu 2 273 -39 500 225 12 17 chr1 233939993 233940166 -8724187 + GA-rich Low_complexity Low_complexity 1 172 0 2201 115 0 3 chr1 233941791 233942095 -8722258 + AluSc SINE Alu 1 303 -6 676 193 0 0 chr1 233942717 233942836 -8721517 - FLAM_A SINE Alu -11 122 4 764 276 86 0 chr1 233943107 233943386 -8720967 - L1ME3A LINE L1 0 6170 5868 237 290 74 30 chr1 233943442 233943780 -8720573 + L1MEc LINE L1 2983 3335 -2880 715 164 6 97 chr1 233944085 233944250 -8720103 + MER58 DNA MER1_type 27 176 -165 339 330 0 0 chr1 233944265 233944377 -8719976 + L1MEc LINE L1 3781 3892 -2323 449 91 0 0 chr1 233944907 233944973 -8719380 - Charlie5 DNA MER1_type -303 2309 2244 390 217 78 9 chr1 233944981 233945096 -8719257 - Charlie5 DNA MER1_type -2489 123 1 435 275 118 36 chr1 233945143 233945423 -8718930 + L1MC4 LINE L1 7495 7797 -245 335 242 52 65 chr1 233945446 233945599 -8718754 + L1MC5 LINE L1 7781 7931 -30 403 217 157 17 chr1 233945853 233945968 -8718385 - L2 LINE L2 -5 3267 3137 604 307 55 5 chr1 233946912 233947114 -8717239 + MIR SINE MIR 12 223 -39 2014 133 3 0 chr1 233948249 233948543 -8715810 - AluSx SINE Alu -17 295 1 516 326 22 39 chr1 233948692 233948922 -8715431 + L3 LINE CR1 877 1102 -475 1157 104 0 0 chr1 233949099 233949243 -8715110 + AluY SINE Alu 55 198 -113 234 91 0 0 chr1 233949502 233949535 -8714818 + (TG)n Simple_repeat Simple_repeat 2 34 0 1747 94 23 0 chr1 233950686 233950951 -8713402 + L1MA2 LINE L1 6034 6304 0 2453 93 0 0 chr1 233951146 233951459 -8712894 + AluSq SINE Alu 1 313 0 234 250 0 0 chr1 233951502 233951558 -8712795 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 1843 154 7 3 chr1 233951628 233951913 -8712440 - AluJo SINE Alu -26 286 1 740 242 9 28 chr1 233951971 233952121 -8712232 + MER3 DNA MER1_type 2 148 -61 2178 118 3 0 chr1 233952121 233952418 -8711935 + AluSq SINE Alu 1 298 -15 740 242 9 28 chr1 233952418 233952478 -8711875 + MER3 DNA MER1_type 148 208 -1 2184 107 0 7 chr1 233952524 233952822 -8711531 - AluSg SINE Alu -14 296 1 278 375 45 0 chr1 233952987 233953099 -8711254 + L2 LINE L2 3155 3271 -1 1717 153 23 43 chr1 233955152 233955452 -8708901 - AluJb SINE Alu -14 298 5 1442 185 85 7 chr1 233957219 233957655 -8706698 + AluJo SINE Alu 1 458 0 1857 151 4 0 chr1 233958169 233958447 -8705906 + AluSx SINE Alu 1 279 -33 186 43 0 0 chr1 233958451 233958474 -8705879 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2046 119 10 19 chr1 233959304 233959615 -8704738 - AluSp SINE Alu -5 308 1 5230 230 27 22 chr1 233961954 233963194 -8701159 + L1ME2 LINE L1 2 1247 -5295 1134 112 7 0 chr1 233963194 233963346 -8701007 + AluSq SINE Alu 1 153 -160 847 261 11 46 chr1 233963346 233963607 -8700746 - L1M4 LINE L1 -6230 312 61 1091 82 0 0 chr1 233963607 233963742 -8700611 + AluSq SINE Alu 163 297 -16 2117 238 53 5 chr1 233963747 233964368 -8699985 + L1ME2 LINE L1 1242 1892 -4754 264 317 97 62 chr1 233964368 233964791 -8699562 + L2 LINE L2 1322 1759 -1555 208 276 0 0 chr1 233964827 233964885 -8699468 + L2 LINE L2 2317 2374 -940 23 0 0 0 chr1 233965155 233965178 -8699175 + AT_rich Low_complexity Low_complexity 1 23 0 223 359 63 14 chr1 233965187 233965329 -8699024 + L2 LINE L2 2818 2966 -306 1755 221 146 24 chr1 233965360 233965827 -8698526 + MLT1F1 LTR MaLR 3 526 -41 272 376 86 32 chr1 233965899 233966085 -8698268 + L2 LINE L2 3029 3224 -48 1993 110 0 34 chr1 233966122 233966453 -8697900 + AluSg SINE Alu 1 321 0 5591 247 71 10 chr1 233967810 233969809 -8694544 + L1ME2 LINE L1 3705 5825 -819 1017 238 83 77 chr1 233969804 233970347 -8694006 + L1ME2 LINE L1 6115 6660 -2 * 23 86 0 0 chr1 233970348 233970406 -8693947 + AT_rich Low_complexity Low_complexity 1 58 0 446 280 135 10 chr1 233970771 233970971 -8693382 + MIR SINE MIR 38 262 0 2505 56 0 7 chr1 233971184 233971489 -8692864 - AluY SINE Alu -8 303 1 246 62 0 0 chr1 233973080 233973112 -8691241 + (A)n Simple_repeat Simple_repeat 1 32 0 224 30 30 0 chr1 233973171 233973204 -8691149 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1583 127 4 0 chr1 233973216 233973444 -8690909 - AluJo SINE Alu -83 229 1 440 265 99 40 chr1 233973594 233973817 -8690536 + MER46C DNA MER2_type 103 338 0 245 276 82 60 chr1 233975168 233975302 -8689051 + L2 LINE L2 3177 3313 0 2087 117 0 0 chr1 233975431 233975713 -8688640 + AluSx SINE Alu 1 282 -30 378 94 0 0 chr1 233975716 233975780 -8688573 + (TA)n Simple_repeat Simple_repeat 2 65 0 609 234 8 0 chr1 233975844 233975968 -8688385 + L2 LINE L2 3189 3313 0 1966 134 0 10 chr1 233976076 233976363 -8687990 + AluSx SINE Alu 1 308 0 181 0 0 0 chr1 233976363 233976383 -8687970 + (CAA)n Simple_repeat Simple_repeat 2 180 0 36 62 0 31 chr1 233976737 233976834 -8687519 + AT_rich Low_complexity Low_complexity 1 94 0 735 176 0 0 chr1 233976848 233976979 -8687374 - FLAM_C SINE Alu -2 131 1 23 0 0 0 chr1 233976986 233977009 -8687344 + AT_rich Low_complexity Low_complexity 1 23 0 195 100 0 0 chr1 233978642 233978672 -8685681 + (TAAAA)n Simple_repeat Simple_repeat 4 33 0 410 278 81 61 chr1 233980345 233980403 -8683950 - L2 LINE L2 -14 3299 3244 1980 70 4 0 chr1 233980403 233980676 -8683677 + AluSp SINE Alu 40 313 0 410 278 81 61 chr1 233980676 233980711 -8683642 - L2 LINE L2 -69 3244 3211 3587 58 0 2 chr1 233980711 233981160 -8683193 + LTR7 LTR ERV1 1 448 -2 410 278 81 61 chr1 233981160 233981359 -8682994 - L2 LINE L2 -102 3211 2999 211 216 0 0 chr1 233981799 233981836 -8682517 + (CATA)n Simple_repeat Simple_repeat 3 39 0 2264 111 0 13 chr1 233982001 233982308 -8682045 - AluSq SINE Alu -10 303 1 269 53 0 26 chr1 233982817 233982855 -8681498 - L1PA10 LINE L1 -13 6155 6119 2141 89 26 0 chr1 233982881 233983185 -8681168 - L1PA10 LINE L1 -5 6163 5852 2234 104 3 7 chr1 233983936 233984243 -8680110 - AluSx SINE Alu -6 306 1 2361 92 0 16 chr1 233984306 233984622 -8679731 - AluSx SINE Alu -1 311 1 2176 90 33 3 chr1 233985115 233985414 -8678939 + AluSx SINE Alu 1 308 -4 332 289 172 6 chr1 233985594 233985774 -8678579 - L1MC/D LINE L1 -2055 5753 5544 493 218 75 11 chr1 233985795 233985983 -8678370 - L1MC/D LINE L1 -703 5461 5262 2255 29 0 43 chr1 233985989 233986148 -8678205 - AluY SINE Alu -20 291 148 2535 46 0 3 chr1 233986148 233986454 -8677899 - AluY SINE Alu -6 305 1 2255 29 0 43 chr1 233986454 233986572 -8677781 - AluY SINE Alu -163 148 26 665 278 134 32 chr1 233986730 233987320 -8677033 - L1MC/D LINE L1 -1889 4257 3608 339 25 0 0 chr1 233987368 233987408 -8676945 + (TG)n Simple_repeat Simple_repeat 2 41 0 1143 182 16 0 chr1 233987805 233988047 -8676306 + L1MA8 LINE L1 6043 6288 -3 416 266 94 48 chr1 233988404 233988926 -8675427 - L1MC/D LINE L1 -3491 2655 2110 24 32 0 0 chr1 233988929 233988960 -8675393 + AT_rich Low_complexity Low_complexity 1 31 0 324 333 63 0 chr1 233989399 233989558 -8674795 - L1ME LINE L1 -435 5727 5559 240 279 102 27 chr1 233989704 233989851 -8674502 + Charlie2b DNA MER1_type 506 663 -2119 241 100 40 0 chr1 233989869 233989919 -8674434 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1998 256 137 45 chr1 233989962 233991237 -8673116 + Charlie2a DNA MER1_type 1472 2862 0 211 294 44 0 chr1 233991500 233991568 -8672785 - MIR SINE MIR -74 188 118 240 200 62 15 chr1 233991622 233991687 -8672666 + MIR SINE MIR 101 168 -94 23 54 0 0 chr1 233991698 233991735 -8672618 + AT_rich Low_complexity Low_complexity 1 37 0 2390 85 3 0 chr1 233991962 233992257 -8672096 - AluSx SINE Alu -16 296 1 2612 44 0 0 chr1 233992560 233992855 -8671498 - AluY SINE Alu -14 297 3 366 23 0 0 chr1 233993088 233993131 -8671222 + (TG)n Simple_repeat Simple_repeat 1 43 0 188 224 15 0 chr1 233993375 233993442 -8670911 + (TA)n Simple_repeat Simple_repeat 1 68 0 282 193 18 18 chr1 233993768 233993825 -8670528 - L2 LINE L2 0 3272 3216 2609 202 32 29 chr1 233994429 233995064 -8669289 - Tigger7 DNA MER2_type 0 2587 66 683 185 8 0 chr1 233995460 233995590 -8668763 + MLT2D LTR ERVL 1 131 -283 3198 174 37 7 chr1 233995590 233996243 -8668110 + L1P5 LINE L1 4649 5352 -804 1773 192 3 6 chr1 233996243 233996556 -8667797 + AluJo SINE Alu 1 312 0 3198 174 37 7 chr1 233996556 233996888 -8667465 + L1P5 LINE L1 5352 5673 -483 1970 134 11 0 chr1 233996906 233997189 -8667164 - AluSq SINE Alu -24 289 4 433 311 44 7 chr1 233997322 233997457 -8666896 - MIR SINE MIR -111 151 12 180 0 0 0 chr1 233997477 233997497 -8666856 + (A)n Simple_repeat Simple_repeat 1 20 0 1990 127 0 13 chr1 233998323 233998622 -8665731 + AluSx SINE Alu 1 295 -17 1829 192 62 31 chr1 233999448 233999834 -8664519 + MER67A LTR ERV1 9 406 -137 1971 99 0 8 chr1 233999936 234000198 -8664155 - AluSx SINE Alu -52 260 1 272 243 155 10 chr1 234000697 234000800 -8663553 + L2 LINE L2 3115 3232 -81 2589 40 0 0 chr1 234000815 234001111 -8663242 - AluY SINE Alu -15 296 1 1187 206 12 0 chr1 234001126 234001373 -8662980 - L1MA9 LINE L1 -33 6279 6030 24 32 0 0 chr1 234002480 234002511 -8661842 + AT_rich Low_complexity Low_complexity 1 31 0 321 26 0 0 chr1 234002563 234002601 -8661752 + (TA)n Simple_repeat Simple_repeat 2 39 0 28 0 0 0 chr1 234002622 234002650 -8661703 + AT_rich Low_complexity Low_complexity 1 28 0 187 318 16 16 chr1 234004136 234004199 -8660154 + L2 LINE L2 3195 3257 -56 506 255 127 33 chr1 234005878 234006090 -8658263 + MIR SINE MIR 31 262 0 282 317 199 14 chr1 234006341 234006562 -8657791 + L2 LINE L2 3009 3270 -2 4603 43 5 5 chr1 234006766 234007342 -8657011 + L1PA8 LINE L1 5597 6172 0 323 256 128 39 chr1 234007591 234007747 -8656606 + MER5B DNA MER1_type 1 170 -8 398 314 44 13 chr1 234008300 234008459 -8655894 - MIR SINE MIR -52 210 47 23 33 0 0 chr1 234009735 234009765 -8654588 + AT_rich Low_complexity Low_complexity 1 30 0 269 218 27 9 chr1 234010187 234010297 -8654056 + (CATA)n Simple_repeat Simple_repeat 3 114 0 261 146 0 0 chr1 234011975 234012023 -8652330 + (TA)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr1 234014513 234014534 -8649819 + AT_rich Low_complexity Low_complexity 1 21 0 215 156 133 0 chr1 234016681 234016726 -8647627 - L2 LINE L2 0 3313 3263 237 270 16 0 chr1 234016873 234016936 -8647417 - L2 LINE L2 -31 3241 3178 255 357 62 51 chr1 234016959 234017315 -8647038 - L2 LINE L2 -64 3208 2849 270 324 69 0 chr1 234017353 234017455 -8646898 + MIR SINE MIR 69 177 -85 357 247 0 0 chr1 234019493 234019578 -8644775 + L1MA9 LINE L1 6228 6312 0 1322 147 173 61 chr1 234019767 234020079 -8644274 + MER7A DNA MER2_type 2 346 0 306 252 96 17 chr1 234020299 234020414 -8643939 + L1ME4a LINE L1 5754 5877 -244 2280 96 0 26 chr1 234021287 234021599 -8642754 - AluSx SINE Alu -8 304 1 219 332 99 71 chr1 234021839 234022568 -8641785 - L2 LINE L2 -787 2527 1779 285 98 0 0 chr1 234024707 234024748 -8639605 + (T)n Simple_repeat Simple_repeat 1 41 0 222 171 0 0 chr1 234025764 234025805 -8638548 + (TA)n Simple_repeat Simple_repeat 2 42 0 486 294 53 22 chr1 234026296 234026345 -8638008 - L1ME3 LINE L1 -1 6161 6115 1562 211 3 16 chr1 234026345 234026653 -8637700 + AluJo SINE Alu 1 304 -8 486 294 53 22 chr1 234026653 234026831 -8637522 - L1ME3 LINE L1 -47 6115 5927 2171 89 34 10 chr1 234027209 234027500 -8636853 - AluSq SINE Alu -15 298 1 318 339 48 0 chr1 234027617 234027741 -8636612 + MIR SINE MIR 32 161 -101 1416 182 0 4 chr1 234027943 234028185 -8636168 + AluSx SINE Alu 1 241 -71 255 61 0 0 chr1 234028432 234028465 -8635888 - Alu SINE Alu -269 33 1 249 257 29 29 chr1 234029554 234029624 -8634729 - L2 LINE L2 0 3272 3203 457 320 57 86 chr1 234029649 234030330 -8634023 + L2 LINE L2 2575 3239 -33 185 65 32 0 chr1 234030338 234030369 -8633984 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 207 409 0 0 chr1 234030372 234030438 -8633915 - L2 LINE L2 -88 3184 3119 2513 59 0 0 chr1 234031376 234031680 -8632673 + AluY SINE Alu 1 304 -7 329 238 171 9 chr1 234033384 234033489 -8630864 - L2 LINE L2 -7 3306 3185 1543 279 107 48 chr1 234033684 234034653 -8629700 + L2 LINE L2 2040 3064 -249 494 95 59 18 chr1 234034694 234034863 -8629490 + (TA)n Simple_repeat Simple_repeat 1 176 0 34 55 0 0 chr1 234034863 234034918 -8629435 + AT_rich Low_complexity Low_complexity 1 55 0 414 0 0 0 chr1 234035471 234035517 -8628836 + (TG)n Simple_repeat Simple_repeat 2 47 0 2116 125 7 0 chr1 234038616 234038905 -8625448 + AluSx SINE Alu 3 293 -19 1683 153 21 0 chr1 234038967 234039248 -8625105 - L1PB4 LINE L1 -71 6085 5799 246 315 117 19 chr1 234039793 234039955 -8624398 - L2 LINE L2 -1312 2002 1825 340 232 33 80 chr1 234040171 234040322 -8624031 + L1M4 LINE L1 4672 4815 -1331 225 291 64 14 chr1 234040451 234040592 -8623761 - L1ME LINE L1 -413 5749 5602 312 331 37 37 chr1 234040635 234040877 -8623476 - L1ME LINE L1 -2254 5554 5313 209 121 45 15 chr1 234040980 234041046 -8623307 + (TA)n Simple_repeat Simple_repeat 1 68 0 25 31 0 0 chr1 234041087 234041119 -8623234 + AT_rich Low_complexity Low_complexity 1 32 0 304 257 62 71 chr1 234041300 234041413 -8622940 - L2 LINE L2 -52 3261 3150 321 314 46 34 chr1 234041532 234041707 -8622646 - L2 LINE L2 -1866 1448 1272 23 0 0 0 chr1 234041933 234041956 -8622397 + AT_rich Low_complexity Low_complexity 1 23 0 181 393 79 0 chr1 234043095 234043235 -8621118 - L2 LINE L2 -858 2456 2306 2154 117 3 0 chr1 234043386 234043684 -8620669 + AluSg SINE Alu 1 299 -11 183 347 83 8 chr1 234044117 234044238 -8620115 - L2 LINE L2 -1895 1419 1290 298 257 124 45 chr1 234045080 234045181 -8619172 + L1ME4a LINE L1 5707 5799 -322 2221 96 0 32 chr1 234045181 234045494 -8618859 - AluSq SINE Alu -5 308 6 298 257 124 45 chr1 234045494 234045723 -8618630 + L1ME4a LINE L1 5799 6063 -58 23 0 0 0 chr1 234046748 234046771 -8617582 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr1 234047659 234047700 -8616653 + AT_rich Low_complexity Low_complexity 1 41 0 197 105 0 26 chr1 234048099 234048137 -8616216 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 565 186 0 0 chr1 234048153 234048255 -8616098 + FRAM SINE Alu 49 150 -26 2090 214 18 31 chr1 234049430 234049944 -8614409 - MER74A LTR ERVL -28 530 24 243 61 0 0 chr1 234049951 234049984 -8614369 + (CA)n Simple_repeat Simple_repeat 1 33 0 2136 98 0 7 chr1 234050806 234051093 -8613260 - AluSg SINE Alu -2 308 24 273 119 0 0 chr1 234051093 234051135 -8613218 + AluSp/q SINE Alu 249 290 -13 198 71 0 0 chr1 234051136 234051164 -8613189 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 2234 105 3 19 chr1 234052128 234052442 -8611911 + AluSg1 SINE Alu 1 309 0 276 297 27 34 chr1 234052607 234052755 -8611598 - L2 LINE L2 -21 3292 3146 31 0 0 0 chr1 234053744 234053775 -8610578 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr1 234054175 234054204 -8610149 + (CA)n Simple_repeat Simple_repeat 1 29 0 1140 62 0 0 chr1 234056198 234056344 -8608009 - L1PA4 LINE L1 0 6155 6010 1816 156 24 0 chr1 234056402 234056690 -8607663 + AluJb SINE Alu 1 295 -17 21 0 0 0 chr1 234056708 234056729 -8607624 + AT_rich Low_complexity Low_complexity 1 21 0 2002 172 53 5 chr1 234056747 234057124 -8607229 - MSTA LTR MaLR 0 428 34 473 187 11 0 chr1 234057126 234057217 -8607136 - MSTA LTR MaLR -303 125 34 727 161 8 0 chr1 234057219 234057343 -8607010 - MSTA LTR MaLR -303 125 1 240 228 0 0 chr1 234058079 234058136 -8606217 - Charlie1 DNA MER1_type -2700 61 5 2249 105 0 7 chr1 234058937 234059242 -8605111 - AluSx SINE Alu -9 303 1 234 252 155 10 chr1 234059741 234059844 -8604509 + L2 LINE L2 3115 3232 -81 2463 57 0 0 chr1 234059859 234060155 -8604198 - AluY SINE Alu -15 296 1 256 299 197 34 chr1 234061156 234061273 -8603080 - L2 LINE L2 0 3272 3137 1670 166 57 38 chr1 234061324 234061692 -8602661 - THE1C LTR MaLR 0 375 1 547 310 99 75 chr1 234061901 234062665 -8601688 - L2 LINE L2 -896 2418 1636 379 241 56 126 chr1 234062745 234062802 -8601551 + MER112 DNA MER1_type 4 63 -197 1944 132 32 24 chr1 234062802 234063143 -8601210 + MER2 DNA MER2_type 1 344 0 379 241 56 126 chr1 234063143 234063355 -8600998 + MER112 DNA MER1_type 63 254 -6 2213 121 0 3 chr1 234063376 234063682 -8600671 + AluSx SINE Alu 1 305 -7 504 281 149 60 chr1 234064199 234064615 -8599738 - L3 LINE CR1 -183 1394 942 237 294 109 17 chr1 234064682 234064801 -8599552 - L3 LINE CR1 -790 787 658 193 455 18 0 chr1 234065008 234065120 -8599233 - L3 LINE CR1 -1297 280 167 26 64 0 0 chr1 234065604 234065651 -8598702 + AT_rich Low_complexity Low_complexity 1 47 0 522 260 85 47 chr1 234065683 234066138 -8598215 - L1ME1 LINE L1 -262 5904 5405 32 67 0 0 chr1 234067505 234067565 -8596788 + AT_rich Low_complexity Low_complexity 1 60 0 2263 106 0 0 chr1 234068677 234068980 -8595373 - AluSx SINE Alu -7 305 3 24 32 0 0 chr1 234069149 234069180 -8595173 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 234069351 234069373 -8594980 + AT_rich Low_complexity Low_complexity 1 22 0 2207 114 0 0 chr1 234071454 234071752 -8592601 + AluSq SINE Alu 1 298 -15 2124 100 10 20 chr1 234071962 234072262 -8592091 - AluSc SINE Alu -12 297 1 1593 171 61 21 chr1 234075920 234076248 -8588105 - MER2 DNA MER2_type 0 344 4 788 232 133 0 chr1 234076379 234076590 -8587763 + MIR SINE MIR 8 246 -16 207 0 0 0 chr1 234076595 234076618 -8587735 + (TTA)n Simple_repeat Simple_repeat 1 23 0 267 251 216 24 chr1 234076675 234076842 -8587511 + MIR3 SINE MIR 5 203 -5 2217 125 0 0 chr1 234077025 234077337 -8587016 + AluSx SINE Alu 1 312 0 220 203 37 49 chr1 234077625 234077788 -8586565 + (TATAA)n Simple_repeat Simple_repeat 4 164 0 282 286 8 67 chr1 234079215 234079334 -8585019 - L2 LINE L2 -2 3311 3200 302 191 0 0 chr1 234079353 234079416 -8584937 - AluJo SINE Alu 0 302 240 1028 144 46 26 chr1 234079416 234079611 -8584742 - AluJo SINE Alu -113 199 1 28 29 0 0 chr1 234079612 234079647 -8584706 + AT_rich Low_complexity Low_complexity 1 35 0 267 103 0 0 chr1 234080362 234080401 -8583952 + MADE1 DNA Mariner 42 80 0 29 0 0 0 chr1 234081083 234081112 -8583241 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 234082742 234082763 -8581590 + AT_rich Low_complexity Low_complexity 1 21 0 652 247 29 0 chr1 234083829 234083999 -8580354 - MER58B DNA MER1_type -2 339 165 332 298 21 21 chr1 234085620 234085761 -8578592 + (TATATG)n Simple_repeat Simple_repeat 4 144 0 216 0 0 0 chr1 234086251 234086275 -8578078 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2008 98 0 4 chr1 234086281 234086545 -8577808 - AluSg SINE Alu -47 263 1 1464 154 7 53 chr1 234087244 234087543 -8576810 + AluJo SINE Alu 23 307 -5 636 236 85 0 chr1 234091297 234091462 -8572891 - MIR SINE MIR -49 213 35 234 0 0 0 chr1 234091562 234091588 -8572765 + (T)n Simple_repeat Simple_repeat 1 26 0 2159 101 7 0 chr1 234091717 234092005 -8572348 - AluSx SINE Alu -22 290 1 284 269 54 67 chr1 234094293 234094442 -8569911 - MIR SINE MIR -46 216 70 194 323 0 0 chr1 234094614 234094676 -8569677 + L2 LINE L2 3164 3225 -88 303 362 81 0 chr1 234094739 234094913 -8569440 + MIR SINE MIR 65 252 -10 21 71 0 0 chr1 234094923 234094965 -8569388 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr1 234096999 234097022 -8567331 + AT_rich Low_complexity Low_complexity 1 23 0 1836 147 7 10 chr1 234098388 234098688 -8565665 + AluJo SINE Alu 1 299 -13 251 339 87 39 chr1 234098815 234098942 -8565411 + L2 LINE L2 3121 3253 -19 197 301 169 0 chr1 234101105 234101188 -8563165 + L2 LINE L2 3160 3256 -16 190 326 0 0 chr1 234102207 234102256 -8562097 - L2 LINE L2 -15 3298 3250 1309 173 12 28 chr1 234102434 234102688 -8561665 - L1MD3 LINE L1 -17 7978 7729 207 100 0 0 chr1 234103902 234103932 -8560421 + (TC)n Simple_repeat Simple_repeat 1 30 0 1424 174 84 39 chr1 234104992 234105348 -8559005 - MER93b LTR ERV1 0 373 2 1940 68 133 5 chr1 234106031 234106414 -8557939 + L1PA8 LINE L1 5741 6172 0 321 263 128 39 chr1 234106663 234106819 -8557534 + MER5B DNA MER1_type 1 170 -8 3136 42 16 14 chr1 234107353 234107779 -8556574 - L1PA8 LINE L1 -149 6023 5597 279 317 199 14 chr1 234107983 234108204 -8556149 - L2 LINE L2 -2 3270 3009 508 255 127 33 chr1 234108455 234108667 -8555686 - MIR SINE MIR 0 262 31 185 318 16 16 chr1 234110346 234110409 -8553944 - L2 LINE L2 -56 3257 3195 28 0 0 0 chr1 234111894 234111922 -8552431 + AT_rich Low_complexity Low_complexity 1 28 0 321 26 0 0 chr1 234111943 234111981 -8552372 + (TA)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr1 234112033 234112064 -8552289 + AT_rich Low_complexity Low_complexity 1 31 0 779 183 20 0 chr1 234113171 234113324 -8551029 + L1MA9 LINE L1 6030 6185 -127 281 269 54 67 chr1 234164933 234165082 -8499271 - MIR SINE MIR -46 216 70 192 323 0 0 chr1 234165254 234165316 -8499037 + L2 LINE L2 3164 3225 -88 291 362 81 0 chr1 234165379 234165553 -8498800 + MIR SINE MIR 65 252 -10 21 71 0 0 chr1 234165563 234165605 -8498748 + AT_rich Low_complexity Low_complexity 1 42 0 199 301 169 0 chr1 234168016 234168099 -8496254 + L2 LINE L2 3160 3256 -16 180 0 0 0 chr1 234169247 234169267 -8495086 + (A)n Simple_repeat Simple_repeat 1 20 0 305 225 0 67 chr1 234169486 234169575 -8494778 - L1MD3 LINE L1 -184 7811 7729 207 100 0 0 chr1 234170789 234170819 -8493534 + (TC)n Simple_repeat Simple_repeat 1 30 0 1429 174 84 39 chr1 234171879 234172235 -8492118 - MER93b LTR ERV1 0 373 2 24 0 0 0 chr1 234173077 234173101 -8491252 + AT_rich Low_complexity Low_complexity 1 24 0 264 236 0 0 chr1 234173803 234173857 -8490496 - MER67A LTR ERV1 0 543 490 2587 177 54 27 chr1 234173857 234174378 -8489975 - MER67A LTR ERV1 0 543 9 1990 127 0 13 chr1 234175204 234175503 -8488850 - AluSx SINE Alu -17 295 1 180 0 0 0 chr1 234176329 234176349 -8488004 + (T)n Simple_repeat Simple_repeat 1 20 0 433 311 44 7 chr1 234176369 234176504 -8487849 + MIR SINE MIR 12 151 -111 702 245 125 14 chr1 234176863 234177079 -8487274 - MIR SINE MIR -21 241 2 339 303 49 28 chr1 234177301 234177443 -8486910 + MIR SINE MIR 51 195 -67 198 103 0 0 chr1 234180134 234180163 -8484190 + (GAA)n Simple_repeat Simple_repeat 2 30 0 284 325 26 20 chr1 234180603 234180754 -8483599 + MER5A DNA MER1_type 3 154 -35 * 443 268 8 8 chr1 234180632 234180755 -8483598 - MER5A DNA MER1_type -20 169 47 31 26 0 0 chr1 234181318 234181356 -8482997 + AT_rich Low_complexity Low_complexity 1 38 0 2374 97 0 13 chr1 234181460 234181771 -8482582 + AluSg SINE Alu 1 307 -3 197 230 14 0 chr1 234183129 234183203 -8481150 + (TA)n Simple_repeat Simple_repeat 1 75 0 29 0 0 0 chr1 234183203 234183232 -8481121 + AT_rich Low_complexity Low_complexity 1 29 0 910 274 62 78 chr1 234184231 234184716 -8479637 + L2 LINE L2 2298 2774 -540 590 285 10 34 chr1 234184782 234184989 -8479364 - MIR SINE MIR -55 207 6 * 1072 251 92 47 chr1 234184977 234185508 -8478845 + L2 LINE L2 2755 3313 0 633 27 0 0 chr1 234186502 234186577 -8477776 + (TG)n Simple_repeat Simple_repeat 2 76 0 617 284 129 0 chr1 234186578 234186849 -8477504 - LTR16A LTR ERVL -2 448 143 2159 107 3 7 chr1 234189657 234189957 -8474396 - AluSx SINE Alu -13 299 1 301 294 24 0 chr1 234190009 234190094 -8474259 + L1MC4 LINE L1 6617 6703 -1339 426 244 0 0 chr1 234190129 234190248 -8474105 + (TA)n Simple_repeat Simple_repeat 1 119 0 2223 127 3 0 chr1 234190991 234191290 -8473063 - AluSx SINE Alu -12 300 1 549 265 155 25 chr1 234191439 234191684 -8472669 - L2 LINE L2 -2206 1108 832 274 329 71 29 chr1 234191715 234191949 -8472404 + MIR SINE MIR 4 262 0 234 0 0 0 chr1 234192983 234193009 -8471344 + (CA)n Simple_repeat Simple_repeat 1 26 0 1940 151 0 29 chr1 234195459 234195770 -8468583 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 234196513 234196534 -8467819 + AT_rich Low_complexity Low_complexity 1 21 0 467 209 33 26 chr1 234197263 234197416 -8466937 - MER53 DNA DNA -1 188 35 2365 71 10 0 chr1 234197519 234197813 -8466540 - AluY SINE Alu -14 297 1 260 281 96 28 chr1 234198146 234198324 -8466029 + MIR SINE MIR 63 252 -10 2706 10 0 0 chr1 234198536 234198833 -8465520 - AluYa5 SINE Alu -14 297 1 778 180 78 44 chr1 234199429 234199635 -8464718 + MER20 DNA MER1_type 7 219 0 2306 62 0 4 chr1 234199819 234200095 -8464258 + AluY SINE Alu 1 275 -36 207 0 0 0 chr1 234200095 234200118 -8464235 + (T)n Simple_repeat Simple_repeat 1 23 0 2223 133 33 0 chr1 234200203 234200594 -8463759 - L1MA5A LINE L1 -23 6274 5871 342 281 41 8 chr1 234201011 234201132 -8463221 + MIR SINE MIR 138 262 0 2375 88 0 3 chr1 234201867 234202172 -8462181 - AluSx SINE Alu -8 304 1 23 0 0 0 chr1 234202711 234202734 -8461619 + AT_rich Low_complexity Low_complexity 1 23 0 2059 91 25 0 chr1 234202899 234203218 -8461135 + AluSp SINE Alu 1 326 0 779 302 87 16 chr1 234204815 234205321 -8459032 + L1MC4a LINE L1 5313 5854 -1954 29 47 0 0 chr1 234205321 234205364 -8458989 + AT_rich Low_complexity Low_complexity 1 43 0 728 219 12 30 chr1 234206548 234206717 -8457636 - MIR SINE MIR -27 235 70 221 258 212 0 chr1 234206805 234206871 -8457482 - L2 LINE L2 -38 3275 3196 240 35 0 0 chr1 234209473 234209502 -8454851 + (T)n Simple_repeat Simple_repeat 1 29 0 2162 115 0 13 chr1 234210920 234211232 -8453121 + AluSx SINE Alu 1 308 -4 231 179 0 0 chr1 234211645 234211684 -8452669 + 5S rRNA rRNA 1 39 -82 321 313 24 0 chr1 234211925 234212008 -8452345 - L2 LINE L2 -2 3311 3227 795 279 61 15 chr1 234212058 234212320 -8452033 - L2 LINE L2 -1015 2299 2026 642 213 63 11 chr1 234212729 234212903 -8451450 + MER20 DNA MER1_type 31 213 -6 2150 94 7 3 chr1 234214054 234214340 -8450013 + AluSq SINE Alu 1 287 -26 192 40 0 0 chr1 234214354 234214379 -8449974 + (CAA)n Simple_repeat Simple_repeat 1 25 0 2279 122 0 0 chr1 234214422 234214725 -8449628 + AluSq SINE Alu 1 303 -10 31150 101 14 58 chr1 234214732 234221170 -8443183 + L1PA7 LINE L1 1 6148 -6 597 250 179 19 chr1 234221252 234221464 -8442889 - MIR SINE MIR -15 247 2 2119 117 24 0 chr1 234221872 234222170 -8442183 + AluJb SINE Alu 1 305 -7 2420 84 3 3 chr1 234222176 234222487 -8441866 + AluY SINE Alu 1 311 0 281 301 123 20 chr1 234223297 234223443 -8440910 - L2 LINE L2 -157 3115 2955 471 369 76 16 chr1 234223616 234224101 -8440252 - L2 LINE L2 -471 2843 2330 1408 193 27 51 chr1 234226581 234226876 -8437477 - AluJo SINE Alu -24 288 1 25 0 0 0 chr1 234227875 234227900 -8436453 + GC_rich Low_complexity Low_complexity 1 25 0 358 197 77 60 chr1 234228717 234228834 -8435519 - L3 LINE CR1 -89 1488 1370 2082 123 0 7 chr1 234231414 234231707 -8432646 + AluSx SINE Alu 21 311 -1 242 393 87 10 chr1 234232722 234232928 -8431425 + L3 LINE CR1 1296 1517 -60 19979 179 40 20 chr1 234232940 234236562 -8427791 + L1PA14 LINE L1 13 3562 -3250 279 0 0 0 chr1 234236562 234236593 -8427760 + (CA)n Simple_repeat Simple_repeat 1 31 0 19979 179 40 20 chr1 234236593 234237910 -8426443 + L1PA14 LINE L1 3562 4851 -1961 2132 123 0 0 chr1 234237910 234238203 -8426150 + AluSx SINE Alu 1 293 -19 19979 179 40 20 chr1 234238203 234238468 -8425885 + L1PA14 LINE L1 4851 5109 -1703 1302 117 241 44 chr1 234238468 234238717 -8425636 + AluSg1 SINE Alu 1 298 -11 19979 179 40 20 chr1 234238717 234240166 -8424187 + L1PA14 LINE L1 5109 6803 -9 1760 171 60 55 chr1 234240564 234240962 -8423391 - MLT1C LTR MaLR -64 403 4 658 232 37 5 chr1 234241155 234241345 -8423008 + L1ME3A LINE L1 286 481 -5915 1059 244 42 116 chr1 234241350 234241767 -8422586 + MLT1E2 LTR MaLR 184 563 -63 2144 104 0 0 chr1 234241767 234242046 -8422307 - AluSg SINE Alu -6 304 26 1059 244 42 116 chr1 234242046 234242104 -8422249 + MLT1E2 LTR MaLR 563 624 -2 452 206 30 8 chr1 234242128 234242259 -8422094 + L1ME3A LINE L1 1044 1177 -5219 4109 180 80 33 chr1 234242336 234242643 -8421710 - MER21B LTR ERV1 -2 861 570 2064 75 3 118 chr1 234242643 234242975 -8421378 - AluSc SINE Alu -15 294 1 4109 180 80 33 chr1 234242975 234243489 -8420864 - MER21B LTR ERV1 -293 570 1 976 262 37 0 chr1 234243494 234243792 -8420561 + L1ME3A LINE L1 3980 4288 -1927 760 205 14 21 chr1 234243808 234244006 -8420347 - L1MC4 LINE L1 -1357 6638 6444 212 204 45 0 chr1 234244326 234244370 -8419983 + GA-rich Low_complexity Low_complexity 3 48 0 1306 219 142 49 chr1 234244446 234244981 -8419372 + L1ME3A LINE L1 5651 6235 -4 2351 110 0 0 chr1 234245135 234245443 -8418910 - AluSx SINE Alu -4 308 1 181 344 90 25 chr1 234245464 234245586 -8418767 + L2 LINE L2 3183 3312 -1 247 301 43 21 chr1 234246651 234246744 -8417609 - L2 LINE L2 -4 3268 3174 * 276 241 85 78 chr1 234246732 234246873 -8417480 + MIR SINE MIR 94 235 -27 2078 129 3 3 chr1 234247306 234247601 -8416752 + AluSx SINE Alu 9 303 -9 1859 112 76 4 chr1 234248835 234249112 -8415241 - AluSx SINE Alu -15 297 1 3632 128 93 36 chr1 234249633 234250021 -8414332 - Tigger3(Golem) DNA MER2_type 0 3028 2663 2474 177 55 20 chr1 234250021 234250479 -8413874 - MER101 LTR ERV1 0 474 1 3632 128 93 36 chr1 234250479 234250684 -8413669 - Tigger3(Golem) DNA MER2_type -365 2663 2471 2110 194 53 37 chr1 234250684 234250763 -8413590 - MER65C LTR ERV1 0 461 385 1623 142 13 52 chr1 234250763 234251072 -8413281 + AluJo SINE Alu 1 297 -15 2110 194 53 37 chr1 234251072 234251446 -8412907 - MER65C LTR ERV1 -76 385 1 3632 128 93 36 chr1 234251446 234251563 -8412790 - Tigger3(Golem) DNA MER2_type -557 2471 2277 584 219 42 8 chr1 234251539 234251658 -8412695 - Tigger3(Golem) DNA MER2_type -2906 123 1 * 416 153 12 47 chr1 234251906 234251991 -8412362 + L1MA9 LINE L1 5998 6079 -233 1150 236 80 45 chr1 234252001 234252328 -8412025 - MER57B LTR ERV1 -4 430 87 1993 159 140 8 chr1 234252328 234252706 -8411647 + MSTA LTR MaLR 1 428 0 1150 236 80 45 chr1 234252706 234252755 -8411598 - MER57B LTR ERV1 -347 87 41 926 170 130 0 chr1 234252773 234252973 -8411380 + L1MA9 LINE L1 6082 6307 -5 242 306 0 0 chr1 234253144 234253206 -8411147 + LTR16C LTR ERVL 430 491 0 1186 126 6 33 chr1 234253896 234254079 -8410274 + L1PA8A LINE L1 5947 6124 -7 230 143 0 24 chr1 234254353 234254395 -8409958 + MER75 DNA T2_type 464 504 0 2039 136 3 3 chr1 234254924 234255232 -8409121 - AluSx SINE Alu -4 308 1 197 278 56 0 chr1 234255311 234255365 -8408988 - MIR SINE MIR -10 252 196 372 203 0 0 chr1 234255440 234255509 -8408844 - MIR SINE MIR -112 150 82 3624 132 29 21 chr1 234255765 234256386 -8407967 + L1MC2 LINE L1 5706 6331 -13 409 254 39 132 chr1 234256596 234256876 -8407477 - MLT1K LTR MaLR -10 578 325 741 207 128 16 chr1 234257648 234257836 -8406517 + MER3 DNA MER1_type 1 209 0 271 265 98 29 chr1 234258516 234258618 -8405735 - MIR3 SINE MIR -24 184 76 2302 101 0 0 chr1 234259985 234260272 -8404081 - AluSx SINE Alu -25 287 1 234 251 87 76 chr1 234260486 234260761 -8403592 - L1ME4a LINE L1 -132 5989 5712 402 289 79 7 chr1 234260835 234260987 -8403366 + MIR SINE MIR 89 251 -11 226 328 128 8 chr1 234261608 234261733 -8402620 - L2 LINE L2 0 3272 3133 206 324 67 57 chr1 234261781 234261886 -8402467 - L2 LINE L2 0 3272 3167 866 50 0 0 chr1 234262674 234262774 -8401579 - L1PA7 LINE L1 -488 5666 5567 3919 61 4 0 chr1 234262774 234263243 -8401110 + L1PA7 LINE L1 5681 6154 0 3716 174 27 11 chr1 234263278 234263938 -8400415 + LTR51 LTR ERV1 1 671 0 577 293 29 19 chr1 234264091 234264299 -8400054 + L1MC/D LINE L1 5602 5811 -1997 228 67 0 0 chr1 234264874 234264904 -8399449 + (TG)n Simple_repeat Simple_repeat 1 30 0 541 279 33 20 chr1 234265103 234265516 -8398837 - MLT1G LTR MaLR -7 583 76 2152 125 0 10 chr1 234265532 234265827 -8398526 - AluSq SINE Alu -21 292 1 261 197 82 0 chr1 234266238 234266299 -8398054 - MIR SINE MIR -22 240 175 338 295 36 14 chr1 234267467 234267606 -8396747 + MIR SINE MIR 118 259 -3 441 0 0 0 chr1 234268723 234268772 -8395581 + (TG)n Simple_repeat Simple_repeat 2 50 0 3154 176 107 3 chr1 234269071 234269706 -8394647 + L1MB8 LINE L1 5477 6177 -1 240 163 41 0 chr1 234269988 234270037 -8394316 - L2 LINE L2 -4 3268 3218 1029 154 166 4 chr1 234270253 234270288 -8394065 - L1MA8 LINE L1 -6 6285 6257 2037 118 21 0 chr1 234270288 234270576 -8393777 - AluSx SINE Alu -18 294 1 1029 154 166 4 chr1 234270576 234270793 -8393560 - L1MA8 LINE L1 -34 6257 5992 684 209 122 60 chr1 234270892 234270945 -8393408 + MLT1A1 LTR MaLR 8 56 -340 1988 162 7 0 chr1 234270945 234271254 -8393099 + AluSx SINE Alu 1 311 -1 684 209 122 60 chr1 234271254 234271525 -8392828 + MLT1A1 LTR MaLR 56 388 -8 2130 103 3 10 chr1 234271635 234271926 -8392427 - AluSc SINE Alu -20 289 1 302 225 113 0 chr1 234273016 234273096 -8391257 - L1MA8 LINE L1 -37 6254 6166 3165 165 139 6 chr1 234273110 234273893 -8390460 - L1MA8 LINE L1 -201 6090 5193 211 264 149 25 chr1 234275909 234276030 -8388323 + MIR SINE MIR 85 220 -42 499 204 47 152 chr1 234276477 234276688 -8387665 + MER5A DNA MER1_type 1 189 0 283 165 60 0 chr1 234277883 234277938 -8386415 + FLAM SINE Alu 74 125 -8 1387 124 5 0 chr1 234277942 234278135 -8386218 + AluSx SINE Alu 1 194 -118 327 196 0 56 chr1 234278135 234278242 -8386111 + G-rich Low_complexity Low_complexity 6 106 0 672 153 0 0 chr1 234278930 234279048 -8385305 + GA-rich Low_complexity Low_complexity 2 119 0 660 278 30 0 chr1 234279048 234279181 -8385172 + AluJ SINE Alu 137 273 -39 930 71 0 0 chr1 234279187 234279327 -8385026 + (CA)n Simple_repeat Simple_repeat 1 140 0 249 312 141 54 chr1 234281447 234281723 -8382630 - L2 LINE L2 -370 2944 2645 353 270 81 14 chr1 234282948 234283096 -8381257 + MIR SINE MIR 30 187 -75 379 194 97 0 chr1 234283122 234283194 -8381159 + MADE1 DNA Mariner 1 79 -1 193 304 0 0 chr1 234284476 234284522 -8379831 + MIR SINE MIR 53 98 -164 2236 94 20 0 chr1 234284547 234284844 -8379509 - AluSp SINE Alu -10 303 1 513 279 62 17 chr1 234286253 234286432 -8377921 + MIR SINE MIR 67 253 -9 207 339 101 55 chr1 234287197 234287415 -8376938 + L2 LINE L2 3045 3272 0 3607 111 8 31 chr1 234287655 234288178 -8376175 - MER9 LTR ERVK 0 511 1 293 288 126 61 chr1 234288235 234288433 -8375920 + MIR SINE MIR 2 212 -50 2606 143 29 12 chr1 234289956 234290049 -8374304 - Tigger2a DNA MER2_type -2278 430 340 2779 184 74 77 chr1 234290049 234290778 -8373575 - LTR8A LTR ERV1 0 727 1 2606 143 29 12 chr1 234290778 234291105 -8373248 - Tigger2a DNA MER2_type -2368 340 3 406 216 0 0 chr1 234291207 234291295 -8373058 + L1PB4 LINE L1 6068 6155 -1 213 132 26 0 chr1 234292064 234292102 -8372251 + (TG)n Simple_repeat Simple_repeat 2 40 0 1470 192 54 124 chr1 234292123 234292623 -8371730 - MLT1C LTR MaLR 0 467 3 836 240 23 0 chr1 234293060 234293231 -8371122 + MER8 DNA MER2_type 3 177 -62 290 207 103 0 chr1 234293208 234293266 -8371087 + MER2 DNA MER2_type 282 345 0 * 346 234 13 13 chr1 234293266 234293336 -8371017 - Tigger2a DNA MER2_type -364 70 1 700 254 68 0 chr1 234293487 234293664 -8370689 + MER5A DNA MER1_type 1 189 0 22 0 0 0 chr1 234294243 234294265 -8370088 + AT_rich Low_complexity Low_complexity 1 22 0 1870 127 16 42 chr1 234294270 234294578 -8369775 - AluSx SINE Alu -1 311 12 1899 151 13 7 chr1 234294585 234294890 -8369463 - AluSc SINE Alu -2 307 1 2196 125 0 0 chr1 234294916 234295213 -8369140 + AluSg SINE Alu 1 297 -13 913 182 29 12 chr1 234295259 234295429 -8368924 - FRAM SINE Alu -3 173 1 191 310 0 0 chr1 234295555 234295613 -8368740 + L2 LINE L2 3256 3313 0 209 311 0 0 chr1 234296062 234296123 -8368230 + CT-rich Low_complexity Low_complexity 1 61 0 200 344 16 0 chr1 234296142 234296206 -8368147 - L2 LINE L2 -33 3239 3175 185 333 0 0 chr1 234299241 234299292 -8365061 + MIR SINE MIR 20 70 -138 241 258 117 42 chr1 234299393 234299513 -8364840 + MIR3 SINE MIR 69 197 -11 32 26 0 0 chr1 234299725 234299764 -8364589 + AT_rich Low_complexity Low_complexity 1 39 0 1124 59 0 7 chr1 234299769 234299905 -8364448 + AluSg1 SINE Alu 1 135 -174 2454 42 0 3 chr1 234299906 234300195 -8364158 + AluY SINE Alu 1 288 -23 21 0 0 0 chr1 234300208 234300229 -8364124 + AT_rich Low_complexity Low_complexity 1 21 0 1394 74 0 6 chr1 234300235 234300411 -8363942 + AluSg1 SINE Alu 120 294 -18 24 0 0 0 chr1 234300455 234300479 -8363874 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr1 234301415 234301456 -8362897 + AT_rich Low_complexity Low_complexity 1 41 0 278 292 97 0 chr1 234301497 234301610 -8362743 - L1ME4a LINE L1 -12 6109 5986 434 211 96 0 chr1 234301787 234301891 -8362462 + L2 LINE L2 3200 3313 0 602 221 99 0 chr1 234301915 234302087 -8362266 + MER53 DNA DNA 1 189 0 183 266 248 18 chr1 234302559 234302668 -8361685 + L2 LINE L2 2127 2260 -1054 198 342 114 11 chr1 234302869 234303053 -8361300 - L2 LINE L2 -414 2900 2698 867 337 92 17 chr1 234303082 234303682 -8360671 - L2 LINE L2 -601 2713 2069 1655 159 20 31 chr1 234303732 234304072 -8360281 + L1MA9 LINE L1 5929 6264 -48 551 315 212 28 chr1 234304074 234304575 -8359778 - L2 LINE L2 -1356 1958 1366 26 0 0 0 chr1 234305297 234305323 -8359030 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr1 234305434 234305463 -8358890 + AT_rich Low_complexity Low_complexity 1 29 0 879 269 52 146 chr1 234306731 234307485 -8356868 - MER21B LTR ERV1 -157 706 24 667 257 78 91 chr1 234307532 234308080 -8356273 - L1MEd LINE L1 -5028 1091 551 3379 134 64 0 chr1 234309020 234309519 -8354834 - LTR26B LTR ERV1 0 531 1 8451 65 4 5 chr1 234310507 234311515 -8352838 + LTR13 LTR ERVK 1 1007 0 3096 241 30 28 chr1 234311515 234312341 -8352012 + HERVK13 LTR ERVK 1 828 -7288 283 200 160 0 chr1 234312335 234312410 -8351943 + HERVK13 LTR ERVK 753 839 -7277 * 6280 216 19 47 chr1 234312622 234314222 -8350131 + HERVK13 LTR ERVK 963 2517 -5599 8503 62 4 5 chr1 234314224 234315232 -8349121 - LTR13 LTR ERVK 0 1007 1 279 179 0 0 chr1 234315724 234315791 -8348562 + (CACAG)n Simple_repeat Simple_repeat 2 68 0 509 241 105 6 chr1 234316206 234316368 -8347985 + MIR SINE MIR 1 178 -84 242 308 68 26 chr1 234316677 234316794 -8347559 - L2 LINE L2 -5 3267 3146 489 311 100 11 chr1 234316867 234317057 -8347296 + MIR SINE MIR 32 238 -24 339 89 0 0 chr1 234317221 234317277 -8347076 + (GA)n Simple_repeat Simple_repeat 1 56 0 1917 144 7 10 chr1 234317559 234317850 -8346503 + AluJo SINE Alu 3 292 -20 2794 190 23 36 chr1 234318157 234319189 -8345164 - L1ME LINE L1 -490 5680 4674 2169 160 33 26 chr1 234319196 234319739 -8344614 - MLT2A2 LTR ERVL 0 554 1 2005 223 36 9 chr1 234319741 234320266 -8344087 - L1ME LINE L1 -1478 4668 4130 302 308 82 33 chr1 234320523 234320705 -8343648 - MIR SINE MIR -3 259 69 3228 253 44 13 chr1 234321001 234321981 -8342372 - L1M4 LINE L1 -1635 4511 3502 1999 108 11 4 chr1 234323702 234323981 -8340372 + AluSx SINE Alu 1 281 -31 539 285 78 0 chr1 234324533 234324712 -8339641 + MIR SINE MIR 1 193 -69 1929 132 28 3 chr1 234324871 234325160 -8339193 - AluSc SINE Alu -13 296 1 235 226 191 0 chr1 234326094 234326178 -8338175 - L2 LINE L2 -4 3268 3169 212 262 16 0 chr1 234326508 234326569 -8337784 + GA-rich Low_complexity Low_complexity 1 62 0 893 285 73 47 chr1 234326976 234327470 -8336883 + MLT1J LTR MaLR 1 507 -4 456 125 0 16 chr1 234327887 234327951 -8336402 - FLAM SINE Alu -25 118 56 230 246 15 15 chr1 234328517 234328582 -8335771 + MLT1K LTR MaLR 185 249 -339 2148 139 13 31 chr1 234329323 234329504 -8334849 - THE1C LTR MaLR 0 375 192 2749 131 57 12 chr1 234329504 234329993 -8334360 - MER9 LTR ERVK 0 511 1 2148 139 13 31 chr1 234329993 234330193 -8334160 - THE1C LTR MaLR -183 192 1 434 114 57 0 chr1 234330612 234330682 -8333671 - MADE1 DNA Mariner -3 77 4 261 146 0 0 chr1 234331623 234331671 -8332682 + (TA)n Simple_repeat Simple_repeat 1 48 0 517 298 44 0 chr1 234332529 234332687 -8331666 - L2 LINE L2 -2 3311 3147 281 264 136 21 chr1 234333323 234333463 -8330890 - L2 LINE L2 -277 3036 2881 1349 142 30 80 chr1 234334694 234334927 -8329426 - MER33 DNA MER1_type -2263 322 110 2345 90 3 0 chr1 234334927 234335226 -8329127 + AluSp SINE Alu 1 300 -13 1349 142 30 80 chr1 234335226 234335331 -8329022 - MER33 DNA MER1_type -2475 110 1 461 262 0 0 chr1 234335601 234335727 -8328626 + MER117 DNA MER1_type 2 127 -70 217 216 27 95 chr1 234335823 234335897 -8328456 + MIR SINE MIR 119 187 -75 369 0 0 0 chr1 234341626 234341667 -8322686 + (TA)n Simple_repeat Simple_repeat 2 42 0 2297 94 7 0 chr1 234347174 234347481 -8316872 + AluSx SINE Alu 1 309 -3 267 79 0 0 chr1 234347510 234347548 -8316805 + (TC)n Simple_repeat Simple_repeat 2 39 0 227 313 0 9 chr1 234347567 234347679 -8316674 + L1MC4 LINE L1 7927 8037 -5 22 56 0 0 chr1 234348914 234348950 -8315403 + AT_rich Low_complexity Low_complexity 1 36 0 2202 101 3 26 chr1 234349837 234350144 -8314209 + AluSp SINE Alu 1 300 -13 283 313 18 61 chr1 234350824 234350987 -8313366 + MLT1K LTR MaLR 91 246 -342 465 274 43 43 chr1 234352786 234353085 -8311268 + L1MCc LINE L1 19 317 -6106 1945 225 75 90 chr1 234353260 234353780 -8310573 + L1M4 LINE L1 3303 3829 -2317 2134 135 137 8 chr1 234353780 234354159 -8310194 - MSTA LTR MaLR 0 428 1 1945 225 75 90 chr1 234354159 234354513 -8309840 + L1M4 LINE L1 3829 4187 -1959 2297 100 3 0 chr1 234354513 234354804 -8309549 + AluSp SINE Alu 4 295 -18 1945 225 75 90 chr1 234354804 234354817 -8309536 + L1M4 LINE L1 4187 4199 -1947 369 0 0 0 chr1 234354817 234354858 -8309495 + (TG)n Simple_repeat Simple_repeat 2 42 0 1945 225 75 90 chr1 234354858 234355107 -8309246 + L1M4 LINE L1 4199 4424 -1722 1230 231 62 54 chr1 234355131 234355615 -8308738 - MLT1D LTR MaLR -10 495 8 2092 239 92 15 chr1 234355636 234356488 -8307865 + L1ME2 LINE L1 4252 5168 -978 494 130 0 0 chr1 234356488 234356557 -8307796 + AluJ/FLAM SINE Alu 1 69 -243 2407 248 87 6 chr1 234356567 234357403 -8306950 + L1ME2 LINE L1 5259 6162 -2 222 236 73 18 chr1 234357414 234357469 -8306884 + MER5A DNA MER1_type 49 106 -83 234 0 0 0 chr1 234357933 234357959 -8306394 + (A)n Simple_repeat Simple_repeat 1 26 0 2316 97 0 0 chr1 234358379 234358678 -8305675 + AluSc SINE Alu 1 299 -10 3745 118 76 27 chr1 234358970 234359604 -8304749 - PABL_B LTR ERV1 0 667 3 215 299 26 0 chr1 234359616 234359693 -8304660 + L2 LINE L2 2659 2737 -577 806 319 55 42 chr1 234360292 234360890 -8303463 + L1M2a LINE L1 1473 2078 -5090 2164 244 34 9 chr1 234360993 234361700 -8302653 + L1MA9 LINE L1 1839 2582 -4516 4744 180 20 5 chr1 234361704 234363004 -8301349 + L1MA9 LINE L1 5351 6668 -665 183 80 0 0 chr1 234363018 234363043 -8301310 + (CA)n Simple_repeat Simple_repeat 2 26 0 1809 173 45 70 chr1 234363044 234363364 -8300989 + L1MA9 LINE L1 6816 7119 -214 2336 47 0 0 chr1 234363364 234363640 -8300713 + AluY SINE Alu 35 310 -1 1809 173 45 70 chr1 234363640 234363850 -8300503 + L1MA9 LINE L1 7119 7333 0 312 304 51 36 chr1 234363887 234364025 -8300328 + MIR SINE MIR 48 187 -75 202 368 103 0 chr1 234364283 234364370 -8299983 + L2 LINE L2 3098 3193 -79 3206 227 71 13 chr1 234364519 234365503 -8298850 + L1PB1 LINE L1 6 1046 -5817 8139 157 39 5 chr1 234365506 234367598 -8296755 + L1PB1 LINE L1 1093 3398 -3464 31 26 0 0 chr1 234367693 234367731 -8296622 + AT_rich Low_complexity Low_complexity 1 38 0 42419 37 1 1 chr1 234367731 234373882 -8290471 - L1PA3 LINE L1 -3 6152 8 8352 173 7 5 chr1 234373917 234376558 -8287795 + L1PB1 LINE L1 4226 6867 0 1252 179 38 34 chr1 234376570 234376778 -8287575 + MER2 DNA MER2_type 54 265 -80 6838 57 5 4 chr1 234376778 234378460 -8285893 - L1PA8 LINE L1 -17 6155 4462 1252 179 38 34 chr1 234378460 234378542 -8285811 + MER2 DNA MER2_type 265 345 0 504 310 92 0 chr1 234378605 234378789 -8285564 - MIR SINE MIR -44 218 18 427 232 189 0 chr1 234379585 234379749 -8284604 + L1MC/D LINE L1 5612 5806 -2002 735 305 76 74 chr1 234380107 234380636 -8283717 + L1MEc LINE L1 101 627 -5769 753 238 9 14 chr1 234380636 234380846 -8283507 - MER3 DNA MER1_type 0 209 1 735 305 76 74 chr1 234380846 234381345 -8283008 + L1MEc LINE L1 627 1123 -5273 2215 176 80 109 chr1 234381345 234382006 -8282347 + LTR8A LTR ERV1 1 639 -88 2085 124 7 0 chr1 234382006 234382288 -8282065 - AluSc SINE Alu -8 301 18 2215 176 80 109 chr1 234382288 234382375 -8281978 + LTR8A LTR ERV1 639 727 0 735 305 76 74 chr1 234382375 234382437 -8281916 + L1MEc LINE L1 1123 1183 -5213 198 0 0 0 chr1 234382437 234382459 -8281894 + (GA)n Simple_repeat Simple_repeat 2 23 0 735 305 76 74 chr1 234382459 234382736 -8281617 + L1MEc LINE L1 1183 1473 -4923 544 348 44 22 chr1 234383013 234383286 -8281067 - L3 LINE CR1 -280 1297 1019 1033 100 17 17 chr1 234383364 234383544 -8280809 + MER4A LTR ERV1 4 183 -481 879 166 0 26 chr1 234383554 234383705 -8280648 - FRAM SINE Alu -30 146 1 984 153 0 0 chr1 234383720 234383890 -8280463 + (TA)n Simple_repeat Simple_repeat 1 170 0 669 189 0 0 chr1 234383991 234384102 -8280251 - FLAM_C SINE Alu -32 111 1 966 130 6 74 chr1 234384103 234384419 -8279934 + MER4A LTR ERV1 149 423 -241 661 219 18 12 chr1 234384435 234384604 -8279749 + MER4C LTR ERV1 277 446 -19 267 294 33 0 chr1 234384646 234384738 -8279615 - L3 LINE CR1 -625 952 858 2249 106 50 31 chr1 234385229 234385586 -8278767 - THE1B LTR MaLR 0 364 1 11384 93 22 3 chr1 234385613 234387164 -8277189 - THE1B-int LTR MaLR 0 1580 1 2203 123 30 38 chr1 234387164 234387531 -8276822 - THE1B LTR MaLR 0 364 1 331 218 0 0 chr1 234388235 234388322 -8276031 - L1MB4 LINE L1 0 6180 6094 512 250 0 8 chr1 234388328 234388452 -8275901 - L1ME2 LINE L1 -33 6131 6009 1582 196 3 30 chr1 234388675 234388971 -8275382 - AluJo SINE Alu -19 293 6 815 259 34 48 chr1 234389733 234390084 -8274269 + MER41E LTR ERV1 166 511 -1 879 233 31 92 chr1 234392047 234392438 -8271915 + MLT2C1 LTR ERVL 13 379 -18 2202 112 0 3 chr1 234394627 234394922 -8269431 - AluSx SINE Alu -14 298 5 21 0 0 0 chr1 234395372 234395393 -8268960 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 234395704 234395725 -8268628 + AT_rich Low_complexity Low_complexity 1 21 0 2425 219 16 3 chr1 234396434 234397008 -8267345 - L1MC4a LINE L1 -90 7718 7138 2340 225 60 41 chr1 234396977 234397813 -8266540 - L1MC4a LINE L1 -1225 6583 5732 * 400 71 0 0 chr1 234399781 234399837 -8264516 + Alu SINE Alu 1 56 -256 1582 99 5 0 chr1 234399837 234400048 -8264305 + AluSg/x SINE Alu 90 301 -11 408 317 93 19 chr1 234400689 234400894 -8263459 + MER115 DNA AcHobo 234 453 -240 1024 286 39 10 chr1 234401027 234401335 -8263018 - L2 LINE L2 -2858 456 140 2522 184 18 23 chr1 234401338 234401907 -8262446 - L1MB8 LINE L1 -2 6987 6422 1214 248 45 62 chr1 234401908 234401950 -8262403 + LTR55 LTR ERV 1 42 -506 1674 176 58 25 chr1 234401950 234402313 -8262040 - THE1C LTR MaLR 0 375 1 9816 129 14 29 chr1 234402313 234403915 -8260438 - THE1C-int LTR MaLR -1 1579 3 1755 150 60 38 chr1 234403916 234404283 -8260070 - THE1C LTR MaLR 0 375 1 1214 248 45 62 chr1 234404283 234404753 -8259600 + LTR55 LTR ERV 40 507 -41 3338 204 37 59 chr1 234404801 234405827 -8258526 - L1MB8 LINE L1 -567 6428 5376 321 219 27 0 chr1 234405827 234405900 -8258453 - MLT1C LTR MaLR -392 75 1 3338 204 37 59 chr1 234405900 234406277 -8258076 - L1MB8 LINE L1 -1619 5376 4992 885 68 0 75 chr1 234406278 234406411 -8257942 - AluSq/x SINE Alu -180 133 11 633 266 6 6 chr1 234406420 234406597 -8257756 - L1MB8 LINE L1 -1984 4973 4797 3175 264 56 15 chr1 234406604 234408252 -8256101 - L1MB8 LINE L1 -2566 4391 2682 6713 111 22 7 chr1 234408288 234409616 -8254737 - L1MA1 LINE L1 0 6302 4951 2622 209 41 6 chr1 234409583 234410293 -8254060 - L1 LINE L1 -2889 4676 3942 * 840 116 11 1 chr1 234410296 234410436 -8253917 + THE1C LTR MaLR 245 375 0 2258 131 19 14 chr1 234410439 234410867 -8253486 - L1 LINE L1 -4169 3396 2967 * 5792 198 34 18 chr1 234410863 234412113 -8252240 - L1 LINE L1 -6281 1284 16 800 282 59 70 chr1 234412143 234412291 -8252062 - L1MB8 LINE L1 -5808 1047 899 2367 82 0 19 chr1 234412291 234412607 -8251746 - AluY SINE Alu -1 310 1 800 282 59 70 chr1 234412607 234413200 -8251153 - L1MB8 LINE L1 -5956 899 11 325 327 55 0 chr1 234413206 234413274 -8251079 - L2 LINE L2 -3166 148 70 273 57 0 0 chr1 234413274 234413309 -8251044 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 325 327 55 0 chr1 234413309 234413350 -8251003 - L2 LINE L2 -3244 70 33 24 0 0 0 chr1 234414264 234414288 -8250065 + AT_rich Low_complexity Low_complexity 1 24 0 1864 199 79 9 chr1 234414874 234415305 -8249048 - MER65C LTR ERV1 0 461 1 1413 174 185 11 chr1 234415428 234415784 -8248569 + MSTA LTR MaLR 11 428 0 3579 172 11 11 chr1 234416145 234416807 -8247546 - LTR51 LTR ERV1 0 671 10 653 257 11 11 chr1 234417080 234417263 -8247090 - MLT1L LTR MaLR -7 608 426 1130 285 122 18 chr1 234417264 234417779 -8246574 + MLT2F LTR ERVL 3 571 -92 483 263 6 19 chr1 234417790 234417950 -8246403 + MLT2E LTR ERVL 471 628 0 421 167 42 10 chr1 234419080 234419176 -8245177 - MER20 DNA MER1_type -12 207 109 451 217 28 0 chr1 234419355 234419461 -8244892 - MER20 DNA MER1_type -110 109 1 330 267 9 120 chr1 234419675 234419900 -8244453 + MLT1J LTR MaLR 156 355 -156 430 282 47 6 chr1 234419988 234420158 -8244195 - MLT1J2 LTR MaLR -245 205 29 681 186 23 52 chr1 234420168 234420190 -8244163 + MLT1C LTR MaLR 6 27 -440 2178 135 34 8 chr1 234420190 234420545 -8243808 - THE1B LTR MaLR 0 364 1 681 186 23 52 chr1 234420545 234420694 -8243659 + MLT1C LTR MaLR 27 172 -295 873 233 38 17 chr1 234420704 234420944 -8243409 + MLT1C LTR MaLR 223 467 0 1616 183 10 10 chr1 234422230 234422519 -8241834 - AluJo SINE Alu -13 299 11 2346 89 7 3 chr1 234422636 234422938 -8241415 + AluSq SINE Alu 1 303 -10 1659 150 0 0 chr1 234423542 234423782 -8240571 + AluSg SINE Alu 54 293 -17 2175 151 31 54 chr1 234424123 234424567 -8239786 + Tigger2a DNA MER2_type 1 434 0 21 36 0 0 chr1 234425630 234425658 -8238695 + AT_rich Low_complexity Low_complexity 1 28 0 904 213 13 42 chr1 234425952 234426164 -8238189 - MLT1A1 LTR MaLR -3 362 156 2076 126 23 13 chr1 234426164 234426474 -8237879 - AluSq SINE Alu 0 313 1 904 213 13 42 chr1 234426474 234426500 -8237853 - MLT1A1 LTR MaLR -209 156 131 361 167 0 0 chr1 234427079 234427139 -8237214 - MLT1A1 LTR MaLR -261 104 45 582 193 0 0 chr1 234427162 234427271 -8237082 - FRAM SINE Alu -9 167 59 258 120 40 0 chr1 234427276 234427326 -8237027 - MLT1A1 LTR MaLR -313 52 1 964 189 198 55 chr1 234427491 234427835 -8236518 - MSTD LTR MaLR -1 395 3 2147 194 15 5 chr1 234428322 234428714 -8235639 - MSTD LTR MaLR 0 396 1 2308 68 0 0 chr1 234428856 234429181 -8235172 + AluY SINE Alu 1 325 0 225 228 35 0 chr1 234429267 234429332 -8235021 + GA-rich Low_complexity Low_complexity 1 67 0 626 211 49 0 chr1 234429795 234429918 -8234435 + FRAM SINE Alu 1 128 -48 348 24 0 0 chr1 234429930 234429971 -8234382 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 251 288 137 33 chr1 234430170 234430469 -8233884 + LTR16A LTR ERVL 108 437 -13 234 138 92 0 chr1 234430472 234430537 -8233816 + (TTAA)n Simple_repeat Simple_repeat 4 74 0 186 377 52 0 chr1 234430679 234430756 -8233597 - L2 LINE L2 -34 3238 3158 2967 138 14 4 chr1 234431415 234431900 -8232453 - L1PB3 LINE L1 -3 6151 5662 1984 163 30 25 chr1 234432190 234432552 -8231801 - THE1B LTR MaLR 0 364 1 499 294 79 53 chr1 234432564 234433094 -8231259 + ERVL-E LTR ERVL 5208 5751 -13 944 285 149 20 chr1 234433099 234433451 -8230902 + MLT2E LTR ERVL 1 306 -322 1479 188 41 94 chr1 234433451 234433845 -8230508 - MLT1A2 LTR MaLR 0 374 2 944 285 149 20 chr1 234433845 234434036 -8230317 + MLT2E LTR ERVL 306 614 -14 370 205 25 66 chr1 234434706 234434828 -8229525 - MER103 DNA DNA -21 145 29 2142 109 3 0 chr1 234436291 234436597 -8227756 + AluSp SINE Alu 1 307 0 1509 106 5 5 chr1 234437163 234437370 -8226983 - AluSg/x SINE Alu -11 299 93 266 232 49 67 chr1 234437508 234437672 -8226681 - L1M4 LINE L1 -913 5233 5073 2109 126 0 7 chr1 234437825 234438135 -8226218 - MER1B DNA MER1_type 0 339 32 752 322 54 38 chr1 234438472 234438829 -8225524 - L1M4 LINE L1 -1291 4855 4481 2277 78 0 3 chr1 234438829 234439160 -8225193 - AluSc SINE Alu 0 330 1 752 322 54 38 chr1 234439160 234439432 -8224921 - L1M4 LINE L1 -1665 4481 4215 317 325 44 81 chr1 234439450 234439525 -8224828 - L1M4 LINE L1 -2002 4144 4068 1999 140 14 0 chr1 234439525 234439811 -8224542 - AluSx SINE Alu -22 290 1 317 325 44 81 chr1 234439811 234440006 -8224347 - L1M4 LINE L1 -2078 4068 3884 180 111 0 0 chr1 234440554 234440581 -8223772 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7668 25 0 3 chr1 234440582 234441632 -8222721 - L1PA3 LINE L1 0 6155 5109 8254 19 1 0 chr1 234441632 234442634 -8221719 + L1PA3 LINE L1 4107 5109 -1037 361 251 3 44 chr1 234442809 234442991 -8221362 + L1MDb LINE L1 1159 1333 -5073 1601 256 70 48 chr1 234443036 234443432 -8220921 + L1MDb LINE L1 2549 2935 -3471 1982 79 0 53 chr1 234443432 234443735 -8220618 - L1PA8 LINE L1 0 6172 5886 1601 256 70 48 chr1 234443735 234444412 -8219941 + L1MDb LINE L1 2935 3646 -2760 662 178 0 0 chr1 234445969 234446076 -8218277 + FLAM_C SINE Alu 1 107 -36 1218 262 73 33 chr1 234446104 234446558 -8217795 + MLT1E LTR MaLR 120 591 -2 324 325 35 0 chr1 234446567 234446681 -8217672 - L1M4 LINE L1 -1554 4592 4475 860 168 0 0 chr1 234447452 234447589 -8216764 + FRAM SINE Alu 1 137 -39 2504 137 92 0 chr1 234447683 234447896 -8216457 - LTR54 LTR ERV1 0 510 318 1989 137 0 3 chr1 234447896 234448181 -8216172 + AluSx SINE Alu 5 288 -24 2504 137 92 0 chr1 234448181 234448434 -8215919 - LTR54 LTR ERV1 -192 318 1 182 256 23 0 chr1 234448480 234448523 -8215830 + MIR SINE MIR 102 145 -63 36 48 0 36 chr1 234449889 234449972 -8214381 + AT_rich Low_complexity Low_complexity 1 80 0 2186 114 3 7 chr1 234450070 234450368 -8213985 + AluSx SINE Alu 1 297 -15 208 284 52 90 chr1 234451683 234451817 -8212536 - L2 LINE L2 -5 3308 3180 1472 33 5 5 chr1 234452043 234452227 -8212126 + L1PA4 LINE L1 5972 6155 0 23 33 0 0 chr1 234453003 234453033 -8211320 + AT_rich Low_complexity Low_complexity 1 30 0 238 239 183 14 chr1 234453069 234453140 -8211213 + L2 LINE L2 3189 3271 -1 1343 204 57 25 chr1 234453443 234453867 -8210486 - MLT1C LTR MaLR -10 495 12 851 262 24 97 chr1 234454406 234454830 -8209523 + L2 LINE L2 2921 3313 0 606 276 97 14 chr1 234455565 234456023 -8208330 - MLT1H LTR MaLR -16 533 1 21 89 0 0 chr1 234456810 234456866 -8207487 + AT_rich Low_complexity Low_complexity 1 56 0 214 329 76 0 chr1 234457833 234457912 -8206441 - L2 LINE L2 -2 3311 3227 715 219 0 0 chr1 234458448 234458571 -8205782 - FLAM_A SINE Alu -10 123 1 1268 189 52 94 chr1 234458658 234459039 -8205314 - MLT1A1 LTR MaLR 0 365 1 239 296 28 28 chr1 234460779 234460850 -8203503 - L2 LINE L2 -73 3199 3129 29 0 0 0 chr1 234461294 234461323 -8203030 + AT_rich Low_complexity Low_complexity 1 29 0 1748 168 0 34 chr1 234461711 234462032 -8202321 + AluJb SINE Alu 1 310 -2 513 32 0 0 chr1 234462035 234462098 -8202255 + (GA)n Simple_repeat Simple_repeat 1 63 0 844 54 54 0 chr1 234462098 234462246 -8202107 + GA-rich Low_complexity Low_complexity 3 158 0 1054 236 58 72 chr1 234462635 234463175 -8201178 + MLT1E LTR MaLR 8 591 -2 1529 196 93 45 chr1 234463295 234463738 -8200615 + MLT2B1 LTR ERVL 1 464 -56 234 198 55 44 chr1 234463774 234463865 -8200488 - L1MC4 LINE L1 -1339 6703 6612 461 193 29 0 chr1 234463865 234464005 -8200348 + (TA)n Simple_repeat Simple_repeat 1 144 0 245 265 109 54 chr1 234464185 234464332 -8200021 - MIR SINE MIR -29 233 79 291 313 33 22 chr1 234464806 234464988 -8199365 + L1M4 LINE L1 55 238 -6304 1185 221 41 25 chr1 234465575 234466111 -8198242 + L1M4 LINE L1 960 1505 -5037 3113 233 49 26 chr1 234466158 234466606 -8197747 + L1M4 LINE L1 2416 2852 -3792 1624 234 38 78 chr1 234466606 234467244 -8197109 + LTR9 LTR ERV1 1 612 0 3113 233 49 26 chr1 234467244 234468120 -8196233 + L1M4 LINE L1 2852 3733 -2911 835 223 14 36 chr1 234468136 234468356 -8195997 - LTR26 LTR ERV1 0 603 389 2419 151 103 11 chr1 234468356 234468820 -8195533 - MER84 LTR ERV1 0 507 1 5209 115 21 7 chr1 234468823 234469632 -8194721 - MER84-int LTR ERV1 -3 4951 4132 1518 123 0 69 chr1 234469618 234469878 -8194475 - MER84-int LTR ERV1 -2548 2406 2165 * 3579 108 15 0 chr1 234469993 234470529 -8193824 - MER84-int LTR ERV1 -2994 1960 1417 2045 184 139 47 chr1 234470534 234471198 -8193155 + MER50 LTR ERV1 10 734 0 1946 79 75 4 chr1 234471210 234471488 -8192865 + AluSq SINE Alu 1 298 -15 6345 124 9 5 chr1 234471488 234472479 -8191874 - MER84-int LTR ERV1 -3537 1417 423 787 112 0 16 chr1 234472479 234472604 -8191749 + L1PB1 LINE L1 6027 6149 -2 327 230 14 0 chr1 234472620 234472694 -8191659 + L2 LINE L2 3234 3308 -5 2448 149 7 21 chr1 234472702 234473131 -8191222 - MER84-int LTR ERV1 -4526 428 6 1767 157 68 18 chr1 234473131 234473192 -8191161 - MER84 LTR ERVI -7 500 444 1684 123 108 7 chr1 234473192 234473469 -8190884 + AluSg SINE Alu 1 305 -5 1767 157 68 18 chr1 234473469 234473745 -8190608 - MER84 LTR ERVI -63 444 146 650 241 49 0 chr1 234473768 234473930 -8190423 - LTR26 LTR ERV1 -211 392 223 411 21 0 0 chr1 234474036 234474084 -8190269 + (CA)n Simple_repeat Simple_repeat 2 49 0 1938 206 7 10 chr1 234475591 234476009 -8188344 + L1MD3 LINE L1 7570 7986 -9 208 286 119 0 chr1 234477248 234477332 -8187021 + MIR SINE MIR 88 181 -81 200 255 0 0 chr1 234477380 234477427 -8186926 + (TGG)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr1 234477617 234477638 -8186715 + AT_rich Low_complexity Low_complexity 1 21 0 2144 148 32 35 chr1 234478190 234478624 -8185729 - Tigger2a DNA MER2_type 0 434 2 300 292 30 89 chr1 234478699 234478867 -8185486 + HAL1 LINE L1 830 987 -1520 30 0 0 0 chr1 234479162 234479192 -8185161 + AT_rich Low_complexity Low_complexity 1 30 0 324 0 0 0 chr1 234479325 234479361 -8184992 + (CA)n Simple_repeat Simple_repeat 2 37 0 1148 200 18 36 chr1 234480183 234480408 -8183945 + AluJo SINE Alu 1 221 -91 21 0 0 0 chr1 234481117 234481138 -8183215 + AT_rich Low_complexity Low_complexity 1 21 0 2128 109 0 67 chr1 234481159 234481489 -8182864 + AluSx SINE Alu 1 308 -4 511 253 12 25 chr1 234482179 234482341 -8182012 + L1MEd LINE L1 5 164 -5955 2162 127 0 34 chr1 234482341 234482664 -8181689 + AluSx SINE Alu 1 312 0 2242 133 0 0 chr1 234483117 234483419 -8180934 + AluSx SINE Alu 1 302 -10 2000 186 104 43 chr1 234483469 234483894 -8180459 - LTR49 LTR ERV1 -2 593 124 2819 125 7 2 chr1 234483894 234484326 -8180027 - MER57B LTR ERV1 0 434 1 2000 186 104 43 chr1 234484326 234484459 -8179894 - LTR49 LTR ERV1 -471 124 1 1413 283 31 21 chr1 234484461 234484645 -8179708 + L1M4 LINE L1 3273 3454 -2692 2341 63 0 7 chr1 234484645 234484953 -8179400 + AluY SINE Alu 1 306 0 1413 283 31 21 chr1 234484953 234485350 -8179003 + L1M4 LINE L1 3454 3861 -2285 355 169 0 14 chr1 234485411 234485482 -8178871 + LTR24B LTR ERV1 4 73 -503 632 248 60 33 chr1 234485612 234485911 -8178442 + LTR24B LTR ERV1 267 573 -3 745 146 0 0 chr1 234485973 234486096 -8178257 + L1PA16 LINE L1 5716 5838 -328 1283 135 164 22 chr1 234486096 234486370 -8177983 - MSTA LTR MaLR -115 313 1 303 159 63 0 chr1 234486383 234486446 -8177907 + L1MB8 LINE L1 5268 5334 -1010 346 297 31 26 chr1 234486447 234486676 -8177677 + L1MB8 LINE L1 5876 6105 -73 2340 194 22 81 chr1 234487309 234488003 -8176350 + L1 LINE L1 2377 3029 -3117 2049 172 7 12 chr1 234488012 234488430 -8175923 + L1MB8 LINE L1 5726 6141 -37 1613 206 14 19 chr1 234488434 234488799 -8175554 + MLT1A1 LTR MaLR 3 365 0 1116 172 39 39 chr1 234488810 234489042 -8175311 - MER46A DNA MER2_type -4 232 1 260 385 41 36 chr1 234489701 234490093 -8174260 - L2 LINE L2 -730 2584 2191 199 349 141 24 chr1 234490100 234490306 -8174047 + MIR3 SINE MIR 2 232 -30 270 237 155 0 chr1 234490346 234490443 -8173910 - L2 LINE L2 0 3313 3202 371 270 38 65 chr1 234490683 234490868 -8173485 + MLT1K LTR MaLR 409 588 0 2056 145 0 3 chr1 234492153 234492449 -8171904 - AluSx SINE Alu -17 295 1 18356 165 42 13 chr1 234492921 234496680 -8167673 + L1MA2 LINE L1 13 3883 -3682 9842 164 31 7 chr1 234496855 234500020 -8164333 + L1MA2 LINE L1 4499 7719 -4 430 243 36 14 chr1 234500313 234500453 -8163900 - MER103 DNA DNA -7 159 17 201 74 0 0 chr1 234500494 234500521 -8163832 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 189 0 0 0 chr1 234500527 234500548 -8163805 + (GA)n Simple_repeat Simple_repeat 2 22 0 211 118 66 0 chr1 234500561 234500637 -8163716 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr1 234500644 234500665 -8163688 + AT_rich Low_complexity Low_complexity 1 21 0 1141 157 52 13 chr1 234500749 234500979 -8163374 + THE1C LTR MaLR 1 239 -136 228 356 8 8 chr1 234501196 234501328 -8163025 - HAL1b LINE L1 -845 503 372 370 274 71 6 chr1 234502058 234502226 -8162127 + L1MC5 LINE L1 7739 7917 -44 1118 216 74 89 chr1 234502249 234502339 -8162014 + MLT2B1 LTR ERVL 2 92 -428 1949 172 28 50 chr1 234502339 234502804 -8161549 - MSTB2 LTR MaLR 0 457 3 1118 216 74 89 chr1 234502804 234503206 -8161147 + MLT2B1 LTR ERVL 92 488 -32 278 85 0 21 chr1 234503206 234503253 -8161100 + (CA)n Simple_repeat Simple_repeat 2 47 0 1118 216 74 89 chr1 234503253 234503286 -8161067 + MLT2B1 LTR ERVL 488 520 0 346 127 0 0 chr1 234503291 234503346 -8161007 + LTR40b LTR ERVL 403 457 -5 492 59 0 0 chr1 234504435 234504503 -8159850 + (GA)n Simple_repeat Simple_repeat 2 69 0 675 271 63 18 chr1 234504557 234504778 -8159575 + LTR40a LTR ERVL 284 514 -5 193 356 0 27 chr1 234505084 234505157 -8159196 - L2 LINE L2 -37 3235 3165 243 273 0 0 chr1 234505213 234505268 -8159085 - L2 LINE L2 -343 2971 2917 576 282 153 39 chr1 234507953 234508339 -8156014 + MLT1J2 LTR MaLR 3 432 -18 25 31 0 0 chr1 234508954 234508986 -8155367 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 234509940 234509961 -8154392 + AT_rich Low_complexity Low_complexity 1 21 0 648 143 0 0 chr1 234511046 234511158 -8153195 + MLT2B2 LTR ERVL 1 112 -408 561 137 11 0 chr1 234511297 234511392 -8152961 - MSTA LTR MaLR -332 96 1 323 130 0 0 chr1 234511392 234511440 -8152913 + MLT2B2 LTR ERVL 468 515 0 1970 190 17 24 chr1 234511472 234511834 -8152519 + MLT2B2 LTR ERVL 108 468 -47 2079 149 116 13 chr1 234511834 234512222 -8152131 - MSTA LTR MaLR 0 428 1 1970 190 17 24 chr1 234512222 234512270 -8152083 + MLT2B2 LTR ERVL 468 515 0 1952 174 0 22 chr1 234514577 234514933 -8149420 + MER7A DNA MER2_type 1 346 0 211 286 209 0 chr1 234515289 234515380 -8148973 - L2 LINE L2 -2 3311 3202 624 247 40 45 chr1 234516260 234516483 -8147870 + MIR SINE MIR 35 256 -6 1106 277 183 42 chr1 234516866 234517916 -8146437 + L2 LINE L2 2051 3283 -30 1874 192 71 119 chr1 234517916 234518678 -8145675 - LTR8A LTR ERV1 -2 725 1 1106 277 183 42 chr1 234518678 234518714 -8145639 + L2 LINE L2 3283 3313 0 315 385 22 6 chr1 234518748 234518930 -8145423 + L2 LINE L2 2456 2640 -674 390 202 21 32 chr1 234519073 234519167 -8145186 + MER21B LTR ERV1 2 94 -769 1100 196 80 49 chr1 234519243 234519743 -8144610 + MER21B LTR ERV1 98 661 -202 1593 168 202 21 chr1 234519745 234520126 -8144227 + LTR47A LTR ERVL 3 452 0 357 229 136 7 chr1 234520126 234520257 -8144096 + MER21B LTR ERV1 655 803 -60 2154 137 0 6 chr1 234520303 234520617 -8143736 - AluSx SINE Alu 0 312 1 493 234 24 143 chr1 234520636 234520888 -8143465 + MIR SINE MIR 41 262 0 421 177 177 0 chr1 234520900 234520996 -8143357 - AluJb SINE Alu -116 196 84 1071 179 9 45 chr1 234520999 234521223 -8143130 + AluJb SINE Alu 93 308 -4 1278 123 10 5 chr1 234521223 234521426 -8142927 - LTR64 LTR ERVK -354 204 1 280 276 66 0 chr1 234522263 234522339 -8142014 + MIR SINE MIR 9 89 -173 2249 132 30 28 chr1 234522378 234522741 -8141612 - THE1B LTR MaLR 0 364 1 526 279 36 17 chr1 234522823 234523008 -8141345 - MIR SINE MIR -63 145 6 185 348 0 0 chr1 234523236 234523282 -8141071 - L2 LINE L2 -86 3186 3141 237 291 85 43 chr1 234523493 234523634 -8140719 - L2 LINE L2 -239 3033 2887 209 177 32 48 chr1 234524039 234524101 -8140252 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2437 44 0 10 chr1 234524451 234524746 -8139607 - AluY SINE Alu -19 292 1 1601 188 4 0 chr1 234524932 234525193 -8139160 + AluJo SINE Alu 1 262 -50 531 0 0 0 chr1 234525193 234525252 -8139101 + (CA)n Simple_repeat Simple_repeat 2 60 0 216 95 40 40 chr1 234525252 234525326 -8139027 + (TA)n Simple_repeat Simple_repeat 1 74 0 189 178 0 0 chr1 234525727 234525772 -8138581 + G-rich Low_complexity Low_complexity 1 45 0 228 265 29 15 chr1 234525944 234526012 -8138341 - MIR SINE MIR -132 130 62 339 210 0 0 chr1 234526172 234526264 -8138089 + MER41B LTR ERV1 112 336 -299 272 264 169 45 chr1 234527248 234527426 -8136927 + MIR SINE MIR 7 206 -56 1678 171 3 48 chr1 234527623 234527932 -8136421 + AluJo SINE Alu 1 295 -17 1977 128 57 33 chr1 234528111 234528477 -8135876 - THE1C LTR MaLR 0 375 1 5139 119 13 14 chr1 234529089 234529873 -8134480 + LTR39 LTR ERV1 1 783 0 248 267 128 0 chr1 234529888 234529974 -8134379 - MIR3 SINE MIR -46 162 66 190 273 0 18 chr1 234530289 234530344 -8134009 + L3 LINE CR1 1369 1422 -155 216 95 40 40 chr1 234531260 234531334 -8133019 + (TA)n Simple_repeat Simple_repeat 1 74 0 423 0 0 0 chr1 234531334 234531381 -8132972 + (TG)n Simple_repeat Simple_repeat 2 48 0 1601 188 4 0 chr1 234531381 234531642 -8132711 - AluJo SINE Alu -50 262 1 2560 44 0 19 chr1 234531828 234532145 -8132208 + AluY SINE Alu 1 311 0 1429 189 25 3 chr1 234532713 234533030 -8131323 + MER33 DNA MER1_type 1 324 0 255 252 63 63 chr1 234533264 234533534 -8130819 + L1MC4a LINE L1 5008 5277 -869 492 309 34 5 chr1 234533677 234533884 -8130469 + L1MC4a LINE L1 5382 5594 -2214 824 228 26 0 chr1 234533911 234534104 -8130249 - L1MC4 LINE L1 -1033 7009 6812 486 210 185 20 chr1 234534107 234534307 -8130046 + L1MC4a LINE L1 5632 5864 -1944 1505 218 3 0 chr1 234534479 234534772 -8129581 + AluJb SINE Alu 19 312 0 412 151 19 57 chr1 234534794 234534900 -8129453 + FLAM_A SINE Alu 41 142 0 1376 215 36 95 chr1 234536032 234536525 -8127828 + MLT2B1 LTR ERVL 1 464 -56 410 180 22 0 chr1 234536541 234536630 -8127723 + (CATA)n Simple_repeat Simple_repeat 2 92 0 228 35 0 0 chr1 234536636 234536665 -8127688 + (TG)n Simple_repeat Simple_repeat 2 30 0 248 86 0 0 chr1 234536670 234536705 -8127648 + MLT2B1 LTR ERVL 481 515 0 2170 128 0 7 chr1 234537035 234537333 -8127020 - AluSx SINE Alu -16 296 1 268 317 63 21 chr1 234537455 234537597 -8126756 + MIR SINE MIR 71 218 -44 509 256 57 65 chr1 234539003 234539265 -8125088 - MLT1J LTR MaLR -18 493 234 268 167 0 0 chr1 234539412 234539466 -8124887 - MLT1L LTR MaLR -544 71 18 1352 97 0 19 chr1 234540361 234540567 -8123786 + L1PA8 LINE L1 5947 6148 -24 186 103 0 0 chr1 234540567 234540596 -8123757 + (TAAAG)n Simple_repeat Simple_repeat 2 30 0 856 266 47 17 chr1 234540941 234541174 -8123179 + MIR SINE MIR 2 241 -21 2195 150 39 40 chr1 234541174 234541712 -8122641 - MER4E LTR ERV1 0 779 74 2501 57 0 0 chr1 234541712 234542010 -8122343 + AluY SINE Alu 1 298 -13 2195 150 39 40 chr1 234542010 234542084 -8122269 - MER4E LTR ERV1 -705 74 1 183 42 0 0 chr1 234542838 234542862 -8121491 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 266 169 24 60 chr1 234543713 234543796 -8120557 - MLT1K LTR MaLR 0 588 509 24 32 0 0 chr1 234544453 234544484 -8119869 + AT_rich Low_complexity Low_complexity 1 31 0 449 216 36 0 chr1 234545070 234545181 -8119172 - L1MB4 LINE L1 0 6180 6066 341 297 48 41 chr1 234546512 234546657 -8117696 - MIR3 SINE MIR -3 205 60 304 216 20 29 chr1 234547026 234547128 -8117225 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 282 319 60 0 chr1 234547531 234547647 -8116706 + MIR SINE MIR 70 192 -70 969 243 63 34 chr1 234547684 234548062 -8116291 + L2 LINE L2 2382 2770 -544 2129 122 3 32 chr1 234548516 234548827 -8115526 - AluSq SINE Alu -11 302 1 289 315 70 58 chr1 234549092 234549333 -8115020 - L2 LINE L2 -639 2675 2432 2150 103 6 34 chr1 234549365 234549686 -8114667 + AluSx SINE Alu 1 312 0 235 239 80 40 chr1 234550000 234550176 -8114177 + L1M4 LINE L1 2729 2911 -3235 188 333 0 0 chr1 234550445 234550487 -8113866 + L2 LINE L2 3212 3253 -19 1264 161 5 5 chr1 234550813 234551031 -8113322 + L1MB3 LINE L1 5563 5780 -403 198 167 0 0 chr1 234551034 234551070 -8113283 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 1719 172 20 10 chr1 234551120 234551417 -8112936 - AluJb SINE Alu -12 300 1 1966 157 24 21 chr1 234551417 234551794 -8112559 + L1MB3 LINE L1 5806 6183 0 9156 80 14 7 chr1 234551956 234554014 -8110339 - L1PA7 LINE L1 -1 6153 4081 1683 108 0 0 chr1 234554748 234555008 -8109345 + L1MA5 LINE L1 6037 6296 -4 429 225 42 42 chr1 234555079 234555199 -8109154 - L2 LINE L2 -4 3309 3190 580 322 22 6 chr1 234556483 234556666 -8107687 + MER5A DNA MER1_type 1 186 -3 302 0 26 0 chr1 234556872 234556910 -8107443 + (CA)n Simple_repeat Simple_repeat 2 40 0 295 259 112 84 chr1 234557858 234558001 -8106352 + L2 LINE L2 3167 3313 0 1641 208 112 30 chr1 234558106 234558614 -8105739 - MER101B LTR ERV1 -31 519 1 874 63 87 0 chr1 234558650 234558776 -8105577 + MER85 DNA T2_type 3 139 0 680 229 6 0 chr1 234558925 234559082 -8105271 - LTR16A1 LTR ERVL 0 457 300 384 262 79 8 chr1 234559509 234559635 -8104718 - LTR16A1 LTR ERVL -123 334 200 633 287 23 0 chr1 234559749 234559923 -8104430 - MER5B DNA MER1_type 0 178 1 1940 126 17 27 chr1 234560585 234560886 -8103467 + AluSx SINE Alu 1 298 -14 241 314 12 12 chr1 234561572 234561658 -8102695 + (TG)n Simple_repeat Simple_repeat 2 87 0 194 352 0 0 chr1 234562444 234562498 -8101855 + L3 LINE CR1 1518 1571 -6 189 375 38 0 chr1 234562914 234562994 -8101359 - L3b LINE CR1 -96 1487 1405 683 234 10 29 chr1 234563348 234563553 -8100800 - LTR33 LTR ERVL -20 501 301 2074 237 71 38 chr1 234563897 234564471 -8099882 - MLT1E LTR MaLR 0 593 1 2269 230 120 5 chr1 234564523 234565172 -8099181 - MER44D DNA MER2_type -9 596 1 1454 176 41 19 chr1 234566467 234566734 -8097619 + AluJo SINE Alu 30 302 -10 206 135 27 0 chr1 234566734 234566771 -8097582 + G-rich Low_complexity Low_complexity 3 40 0 2082 54 0 4 chr1 234566781 234567041 -8097312 - L1PA5 LINE L1 -4 6150 5892 339 246 17 68 chr1 234568349 234568467 -8095886 + L2 LINE L2 3153 3264 -49 2065 108 21 0 chr1 234568598 234568884 -8095469 - AluSx SINE Alu -15 297 6 193 245 19 38 chr1 234569118 234569171 -8095182 - MER5A DNA MER1_type -2 187 136 307 223 174 35 chr1 234569710 234570704 -8093649 + L1MD3 LINE L1 6904 8025 -14 1969 177 3 11 chr1 234570704 234571055 -8093298 - MER7A DNA MER2_type 0 346 1 307 223 174 35 chr1 234571055 234571072 -8093281 + L1MD3 LINE L1 8025 8038 -1 2217 126 0 0 chr1 234571431 234571732 -8092621 + AluSx SINE Alu 1 301 -11 373 328 132 16 chr1 234571792 234572179 -8092174 + L1MC4 LINE L1 6572 7066 -805 237 33 0 0 chr1 234572895 234572925 -8091428 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2273 168 7 31 chr1 234574936 234575360 -8088993 + MLT2D LTR ERVL 1 414 0 236 246 0 0 chr1 234575431 234575496 -8088857 - HAL1 LINE L1 -359 2148 2084 307 336 57 19 chr1 234575878 234576116 -8088237 - HAL1 LINE L1 -724 1783 1533 1376 177 203 19 chr1 234576116 234576535 -8087818 + LTR54B LTR ERV1 1 496 -2 307 336 57 19 chr1 234576535 234576558 -8087795 - HAL1 LINE L1 -974 1533 1512 2035 139 10 7 chr1 234576576 234576879 -8087474 - AluSx SINE Alu -8 304 1 26 30 0 0 chr1 234578431 234578464 -8085889 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr1 234578490 234578518 -8085835 + AT_rich Low_complexity Low_complexity 1 28 0 200 59 29 0 chr1 234578647 234578681 -8085672 + (TG)n Simple_repeat Simple_repeat 2 36 0 242 325 106 8 chr1 234579965 234580088 -8084265 - MIR SINE MIR -108 154 20 424 243 18 0 chr1 234580323 234580434 -8083919 - MLT1I LTR MaLR -3 406 294 192 272 12 74 chr1 234580925 234581006 -8083347 - MIR SINE MIR -108 154 79 22 0 0 0 chr1 234581759 234581781 -8082572 + AT_rich Low_complexity Low_complexity 1 22 0 208 182 23 0 chr1 234581935 234581979 -8082374 + A-rich Low_complexity Low_complexity 3 47 0 192 111 0 0 chr1 234582257 234582293 -8082060 + (T)n Simple_repeat Simple_repeat 1 36 0 415 303 61 28 chr1 234582298 234582725 -8081628 - LTR33A LTR ERVL -52 471 2 337 279 22 66 chr1 234582742 234582878 -8081475 - MIR SINE MIR -7 255 126 405 0 0 0 chr1 234584155 234584200 -8080153 + (CA)n Simple_repeat Simple_repeat 1 45 0 315 0 0 0 chr1 234584199 234584234 -8080119 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 2127 118 3 13 chr1 234584604 234584918 -8079435 - AluSx SINE Alu -1 311 1 2021 134 14 0 chr1 234585599 234585889 -8078464 - AluJb SINE Alu -18 294 1 245 277 77 15 chr1 234586640 234586835 -8077518 + L1MEc LINE L1 2103 2309 -4087 1871 154 4 0 chr1 234586843 234587144 -8077209 - AluSx SINE Alu 0 302 1 1429 254 90 31 chr1 234587172 234587565 -8076788 + L1MEc LINE L1 2287 2655 -3560 3381 95 36 147 chr1 234587565 234588312 -8076041 + MER4A LTR ERV1 1 664 0 1429 254 90 31 chr1 234588312 234588986 -8075367 + L1MEc LINE L1 2655 3417 -2798 284 197 40 0 chr1 234588971 234589047 -8075306 + L1MC3 LINE L1 7038 7116 -669 * 227 229 0 145 chr1 234589049 234589076 -8075277 + MLT1F1 LTR MaLR 55 84 -483 2008 121 16 6 chr1 234589076 234589390 -8074963 - L1PA14 LINE L1 -4 6157 5841 227 229 0 145 chr1 234589390 234589445 -8074908 + MLT1F1 LTR MaLR 84 125 -442 279 161 65 0 chr1 234589445 234589507 -8074846 + L1MC4a LINE L1 7229 7294 -514 373 277 17 21 chr1 234589737 234590014 -8074339 + MLT1H LTR MaLR 7 332 -217 380 187 0 0 chr1 234590104 234590179 -8074174 + MLT1H LTR MaLR 475 549 0 4587 124 6 45 chr1 234590571 234590794 -8073559 + LTR39 LTR ERV1 1 231 -552 1087 143 0 30 chr1 234590794 234590962 -8073391 + FRAM SINE Alu 4 166 0 4587 124 6 45 chr1 234590962 234591553 -8072800 + LTR39 LTR ERV1 231 783 0 2216 95 3 44 chr1 234591916 234592232 -8072121 - AluSg SINE Alu -7 303 1 2113 200 39 74 chr1 234592272 234592906 -8071447 - LTR9 LTR ERV1 0 612 1 621 111 0 10 chr1 234594180 234594279 -8070074 + MER4A LTR ERV1 1 98 -566 1485 123 181 77 chr1 234594279 234594644 -8069709 + MER4A LTR ERV1 261 663 -1 3174 130 79 7 chr1 234594722 234595276 -8069077 - LTR49 LTR ERV1 0 595 2 28 29 0 0 chr1 234596272 234596307 -8068046 + AT_rich Low_complexity Low_complexity 1 35 0 241 245 0 0 chr1 234598044 234598093 -8066260 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 1307 163 4 79 chr1 234598322 234598419 -8065934 + AluJo SINE Alu 40 143 -169 773 150 0 15 chr1 234598419 234598552 -8065801 - AluJo/FLAM SINE Alu -171 131 1 1307 163 4 79 chr1 234598552 234598717 -8065636 + AluJo SINE Alu 143 283 -29 285 98 0 0 chr1 234598717 234598758 -8065595 + (CA)n Simple_repeat Simple_repeat 2 42 0 1307 163 4 79 chr1 234598758 234598771 -8065582 + AluJo SINE Alu 283 295 -17 2149 136 26 94 chr1 234599961 234600717 -8063636 - MER39B LTR ERV1 -1 652 3 21 82 0 0 chr1 234601904 234601953 -8062400 + AT_rich Low_complexity Low_complexity 1 49 0 318 279 100 32 chr1 234602433 234602623 -8061730 - MER112 DNA MER1_type -12 248 46 2634 55 0 0 chr1 234603255 234603566 -8060787 + AluY SINE Alu 1 311 0 1666 142 80 45 chr1 234603850 234604202 -8060151 - THE1B LTR MaLR 0 364 1 8205 143 79 9 chr1 234604202 234605676 -8058677 - THE1C-int LTR MaLR 0 1580 3 1720 128 68 86 chr1 234605678 234606060 -8058293 - THE1C LTR MaLR 0 375 1 829 174 47 6 chr1 234606212 234606384 -8057969 + MER58A DNA MER1_type 42 220 -4 468 304 170 9 chr1 234606492 234606716 -8057637 - MIR SINE MIR 0 262 3 299 336 63 0 chr1 234607037 234607180 -8057173 - MIR3 SINE MIR -14 194 43 184 311 89 0 chr1 234607648 234607738 -8056615 - L3 LINE CR1 -1105 472 375 2461 159 21 12 chr1 234607979 234608407 -8055946 - MSTB1 LTR MaLR 0 432 1 360 304 88 41 chr1 234608882 234609053 -8055300 + MIR3 SINE MIR 23 201 -7 1023 199 106 42 chr1 234609438 234609769 -8054584 + MLT1D LTR MaLR 1 352 -153 541 277 41 29 chr1 234609800 234610042 -8054311 + MLT1D LTR MaLR 260 504 -1 279 229 15 114 chr1 234610558 234610689 -8053664 + MLT1J2 LTR MaLR 1 118 -332 293 327 57 25 chr1 234610793 234610952 -8053401 + MLT1J2 LTR MaLR 264 427 -23 2265 125 3 0 chr1 234611820 234612131 -8052222 - AluSx SINE Alu 0 312 1 320 361 68 51 chr1 234612626 234612922 -8051431 + L2 LINE L2 2972 3272 0 224 288 8 0 chr1 234613018 234613136 -8051217 + (TA)n Simple_repeat Simple_repeat 2 120 0 1763 135 53 28 chr1 234614265 234614584 -8049769 - MER7A DNA MER2_type 0 346 22 1150 245 55 83 chr1 234614607 234614821 -8049532 - MER54A LTR ERVL -119 782 564 2563 55 0 0 chr1 234614821 234615130 -8049223 + AluY SINE Alu 1 309 -2 1150 245 55 83 chr1 234615130 234615385 -8048968 - MER54A LTR ERVL -337 564 326 308 214 0 0 chr1 234615530 234615586 -8048767 - MER7A DNA MER2_type -292 56 1 700 257 67 21 chr1 234615642 234615973 -8048380 - L1M4 LINE L1 -1979 4167 3822 183 80 0 0 chr1 234616051 234616076 -8048277 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 27 29 0 0 chr1 234616224 234616258 -8048095 + AT_rich Low_complexity Low_complexity 1 34 0 1071 352 78 43 chr1 234616443 234617549 -8046804 - L2 LINE L2 -183 3089 1944 240 286 13 13 chr1 234617558 234617635 -8046718 - MIR SINE MIR -9 253 177 310 351 24 18 chr1 234617696 234617861 -8046492 - L2 LINE L2 -1395 1919 1754 201 74 0 0 chr1 234618024 234618051 -8046302 + (TGG)n Simple_repeat Simple_repeat 3 29 0 353 39 20 0 chr1 234618051 234618102 -8046251 + (TG)n Simple_repeat Simple_repeat 2 53 0 353 227 52 21 chr1 234618465 234618562 -8045791 + MER5A DNA MER1_type 13 112 -77 347 265 58 61 chr1 234619131 234619420 -8044933 + L1ME3A LINE L1 2666 2956 -3190 2334 70 0 0 chr1 234619420 234619727 -8044626 + AluY SINE Alu 1 307 0 347 265 58 61 chr1 234619727 234619814 -8044539 + L1ME3A LINE L1 2956 3042 -3104 284 279 63 58 chr1 234619846 234620150 -8044203 + L1ME3A LINE L1 4226 4534 -1612 666 95 0 0 chr1 234620150 234620245 -8044108 + (TA)n Simple_repeat Simple_repeat 2 96 0 284 279 63 58 chr1 234620245 234620305 -8044048 + L1ME3A LINE L1 4534 4592 -1554 692 329 47 5 chr1 234620857 234621389 -8042964 + L1ME3A LINE L1 5293 5848 -322 9149 187 52 5 chr1 234621413 234623563 -8040790 + L1 LINE L1 2599 4849 -1297 685 224 58 6 chr1 234623563 234623737 -8040616 + MER58B DNA MER1_type 159 341 0 1012 171 12 0 chr1 234624158 234624322 -8040031 - AluJb SINE Alu -14 298 133 2261 100 3 10 chr1 234624387 234624698 -8039655 - AluSq SINE Alu -4 309 1 590 193 22 7 chr1 234625314 234625449 -8038904 - MER69 DNA AcHobo -2387 139 3 298 204 93 65 chr1 234625609 234625717 -8038636 - L2 LINE L2 -3 3310 3200 2128 63 15 4 chr1 234625798 234626069 -8038284 + AluY SINE Alu 36 309 -2 371 299 78 73 chr1 234626830 234627228 -8037125 + L2 LINE L2 2077 2476 -838 48 77 0 0 chr1 234627253 234627357 -8036996 + AT_rich Low_complexity Low_complexity 1 104 0 313 227 21 52 chr1 234627358 234627455 -8036898 + L1MC4 LINE L1 6619 6712 -1330 418 382 94 8 chr1 234627456 234627876 -8036477 + L2 LINE L2 2569 3021 -251 603 228 25 25 chr1 234628036 234628238 -8036115 - LTR55 LTR ERV -106 442 241 992 190 4 35 chr1 234628290 234628522 -8035831 - LTR55 LTR ERV -323 225 1 196 400 36 24 chr1 234628546 234628711 -8035642 + L2 LINE L2 3104 3270 -2 3087 126 11 6 chr1 234629624 234630093 -8034260 - MER1A DNA MER1_type 0 529 59 24 0 0 0 chr1 234630304 234630328 -8034025 + AT_rich Low_complexity Low_complexity 1 24 0 2207 133 33 22 chr1 234631289 234631649 -8032704 - THE1B LTR MaLR 0 364 1 270 0 0 0 chr1 234631693 234631723 -8032630 + (TC)n Simple_repeat Simple_repeat 2 31 0 261 0 0 0 chr1 234631722 234631751 -8032602 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 1261 257 68 28 chr1 234631777 234632244 -8032109 + MER77 LTR ERV1 53 538 -67 1686 166 47 7 chr1 234632450 234632746 -8031607 - AluJo SINE Alu -4 308 1 275 288 65 14 chr1 234633299 234633438 -8030915 + MLT1I LTR MaLR 15 160 -249 238 350 17 25 chr1 234633499 234633619 -8030734 + MIR SINE MIR 142 260 -2 21 0 0 0 chr1 234633743 234633764 -8030589 + AT_rich Low_complexity Low_complexity 1 21 0 2418 87 0 13 chr1 234634450 234634761 -8029592 - AluSx SINE Alu -4 308 2 184 188 0 0 chr1 234634960 234634992 -8029361 + L2 LINE L2 3222 3253 -19 4114 195 121 37 chr1 234635055 234636363 -8027990 + Charlie1a DNA MER1_type 37 1454 -1 234 367 67 27 chr1 234636595 234636745 -8027608 + L2 LINE L2 3117 3272 0 1719 259 19 17 chr1 234638587 234639116 -8025237 + MER74B LTR ERVL 2 531 -91 336 305 96 10 chr1 234639122 234639414 -8024939 + L1MEc LINE L1 1051 1367 -5029 1666 219 80 105 chr1 234639532 234640296 -8024057 - LTR1B LTR ERV1 -81 745 1 2378 205 40 40 chr1 234640466 234641067 -8023286 + MLT1E2 LTR MaLR 18 618 -8 1996 163 23 28 chr1 234641699 234642097 -8022256 - Tigger2a DNA MER2_type -38 396 1 2204 86 17 3 chr1 234642221 234642511 -8021842 + AluSx SINE Alu 1 294 -18 360 304 87 11 chr1 234642523 234642878 -8021475 + L1MDa LINE L1 1486 1867 -4673 * 1664 241 45 7 chr1 234642867 234643440 -8020913 + L1MDa LINE L1 2192 2786 -3935 2166 187 112 15 chr1 234643448 234643966 -8020387 + MER54A LTR ERVL 1 568 -333 360 0 0 0 chr1 234643966 234644006 -8020347 + (T)n Simple_repeat Simple_repeat 1 40 0 256 300 36 18 chr1 234644652 234644762 -8019591 - MLT1K LTR MaLR -324 264 153 371 300 107 76 chr1 234645265 234645555 -8018798 + L2 LINE L2 3009 3307 -6 239 335 69 37 chr1 234646765 234646953 -8017400 - MIR SINE MIR -57 205 12 535 195 86 17 chr1 234647352 234647526 -8016827 - MER53 DNA DNA -3 186 1 265 133 70 16 chr1 234648891 234649019 -8015334 + (TA)n Simple_repeat Simple_repeat 2 136 0 989 202 25 108 chr1 234649068 234649429 -8014924 - MLT2D LTR ERVL -83 331 1 4555 217 35 43 chr1 234649863 234650979 -8013374 + MLT1A1-int LTR MaLR 629 1735 0 955 244 62 73 chr1 234650979 234651278 -8013075 + MLT1A1 LTR MaLR 1 298 -67 2080 114 4 0 chr1 234651278 234651582 -8012771 - AluSg SINE Alu 0 305 1 955 244 62 73 chr1 234651582 234651650 -8012703 + MLT1A1 LTR MaLR 298 365 0 1892 114 0 57 chr1 234652473 234652772 -8011581 + AluSg SINE Alu 1 282 -28 186 71 0 0 chr1 234652777 234652805 -8011548 + (CAAG)n Simple_repeat Simple_repeat 2 29 0 2768 205 91 37 chr1 234652825 234653124 -8011229 - MER69 DNA AcHobo -12 2514 2233 2170 118 0 3 chr1 234653124 234653429 -8010924 + AluSx SINE Alu 2 305 -7 2768 205 91 37 chr1 234653429 234654055 -8010298 - MER69 DNA AcHobo -293 2233 1642 2147 98 0 55 chr1 234654055 234654383 -8009970 - AluSg SINE Alu 0 310 1 2768 205 91 37 chr1 234654383 234654399 -8009954 - MER69 DNA AcHobo -884 1642 1628 2181 77 0 24 chr1 234654399 234654710 -8009643 + AluY SINE Alu 4 307 0 2768 205 91 37 chr1 234654710 234654768 -8009585 - MER69 DNA AcHobo -898 1628 1458 834 275 27 16 chr1 234654778 234655036 -8009317 - MER69 DNA AcHobo -2264 262 2 2540 189 29 16 chr1 234655248 234656398 -8007955 + L1MB4 LINE L1 4968 6179 -1 25 83 0 0 chr1 234657041 234657101 -8007252 + AT_rich Low_complexity Low_complexity 1 60 0 616 337 62 10 chr1 234657357 234657743 -8006610 + L1PA12 LINE L1 10 415 -7166 363 226 26 69 chr1 234657972 234658091 -8006262 - MSTA LTR MaLR 0 428 319 2724 178 11 19 chr1 234658091 234658365 -8005988 + L1 LINE L1 3580 3855 -2291 2204 117 17 0 chr1 234658365 234658656 -8005697 + AluSq SINE Alu 1 296 -17 2724 178 11 19 chr1 234658656 234658948 -8005405 + L1 LINE L1 3855 4141 -2005 1599 183 95 101 chr1 234659216 234659401 -8004952 - MER68 LTR ERV1 0 562 377 2336 108 0 0 chr1 234659401 234659708 -8004645 - AluSc SINE Alu -2 307 1 1599 183 95 101 chr1 234659708 234660059 -8004294 - MER68 LTR ERV1 -185 377 29 233 244 31 28 chr1 234660377 234660537 -8003816 + L2 LINE L2 3103 3311 -2 2305 99 0 16 chr1 234660849 234661161 -8003192 - AluSg SINE Alu -1 309 3 221 384 12 0 chr1 234661241 234661327 -8003026 + L2 LINE L2 3186 3272 0 204 214 0 0 chr1 234661502 234661558 -8002795 + (CTA)n Simple_repeat Simple_repeat 2 57 0 415 296 79 105 chr1 234661560 234661827 -8002526 - MIR SINE MIR -2 260 1 21 57 0 0 chr1 234662593 234662628 -8001725 + AT_rich Low_complexity Low_complexity 1 35 0 2305 101 3 0 chr1 234663230 234663538 -8000815 - AluSx SINE Alu -1 311 3 233 254 17 0 chr1 234664143 234664202 -8000151 - L2 LINE L2 0 3313 3254 378 0 0 0 chr1 234664312 234664354 -7999999 + (TA)n Simple_repeat Simple_repeat 2 43 0 399 95 0 0 chr1 234664637 234664700 -7999653 + L1MA7 LINE L1 6229 6291 0 2957 122 62 14 chr1 234665589 234666071 -7998282 - LTR10B LTR ERV1 0 505 1 2510 66 0 0 chr1 234666094 234666398 -7997955 + AluY SINE Alu 1 304 -7 861 146 0 19 chr1 234666682 234666840 -7997513 - LTR7 LTR ERV1 0 450 296 812 130 8 18 chr1 234667070 234667238 -7997115 - LTR7 LTR ERV1 -232 218 1 637 251 89 33 chr1 234667534 234667711 -7996642 - MER69 DNA AcHobo 0 2526 2360 2405 84 0 0 chr1 234667711 234668008 -7996345 + AluY SINE Alu 1 297 -14 637 251 89 33 chr1 234668008 234668281 -7996072 - MER69 DNA AcHobo -166 2360 2051 2374 78 3 0 chr1 234668294 234668589 -7995764 + AluSp SINE Alu 1 296 -17 1976 250 113 17 chr1 234668735 234668954 -7995399 - L1MCc LINE L1 -4447 2494 2298 1591 185 14 11 chr1 234668954 234669240 -7995113 + AluJo SINE Alu 1 287 -25 1976 250 113 17 chr1 234669240 234670173 -7994180 - L1MCc LINE L1 -4643 2298 1214 266 182 50 61 chr1 234670345 234670444 -7993909 + L1MB4 LINE L1 5961 6057 -123 818 134 14 0 chr1 234670471 234670613 -7993740 + L1MB4 LINE L1 6036 6179 -1 809 260 56 93 chr1 234670864 234671498 -7992855 - MER69 DNA AcHobo -1141 1385 713 2312 107 0 0 chr1 234671498 234671796 -7992557 - AluSg SINE Alu -12 298 1 809 260 56 93 chr1 234671796 234672022 -7992331 - MER69 DNA AcHobo -1813 713 480 1085 283 39 11 chr1 234672050 234672411 -7991942 - MER69 DNA AcHobo -2154 372 2 5795 256 42 32 chr1 234672900 234675974 -7988379 - L1 LINE L1 -3584 2766 6 25 65 0 0 chr1 234675987 234676033 -7988320 + AT_rich Low_complexity Low_complexity 1 46 0 2478 68 0 0 chr1 234676883 234677190 -7987163 - AluY SINE Alu -4 307 1 25 65 0 0 chr1 234679499 234679545 -7984808 + AT_rich Low_complexity Low_complexity 1 46 0 684 258 30 52 chr1 234679828 234680095 -7984258 - MIR SINE MIR 0 262 2 1382 275 54 12 chr1 234680640 234681120 -7983233 + MLT1H1 LTR MaLR 54 553 -2 518 363 37 45 chr1 234681798 234682394 -7981959 - L2 LINE L2 -67 3246 2652 478 228 22 0 chr1 234682429 234682521 -7981832 - MER5A DNA MER1_type -84 105 12 26 0 0 0 chr1 234683376 234683402 -7980951 + AT_rich Low_complexity Low_complexity 1 26 0 2512 49 0 0 chr1 234684036 234684340 -7980013 - AluY SINE Alu -7 304 1 2935 250 55 55 chr1 234684630 234684821 -7979532 + L1MC4 LINE L1 6462 6652 -1390 2184 101 3 0 chr1 234684821 234685107 -7979246 - AluSp SINE Alu -26 287 1 2935 250 55 55 chr1 234685107 234686103 -7978250 + L1MC4 LINE L1 6652 7652 -390 2163 105 0 41 chr1 234686103 234686418 -7977935 - AluSx SINE Alu -10 302 1 2935 250 55 55 chr1 234686418 234686548 -7977805 + L1MC4 LINE L1 7651 7780 -262 465 128 0 0 chr1 234686617 234686695 -7977658 + L1PA16 LINE L1 6089 6166 0 339 289 10 10 chr1 234687138 234687242 -7977111 - MIR3 SINE MIR -13 195 92 8940 144 19 7 chr1 234687244 234688775 -7975578 + Tigger1 DNA MER2_type 1 1550 -868 279 167 0 131 chr1 234688775 234688859 -7975494 + AluJo SINE Alu 78 150 -152 * 5144 125 14 20 chr1 234688856 234689733 -7974620 + Tigger1 DNA MER2_type 1547 2417 -1 191 232 36 18 chr1 234689742 234689798 -7974555 - MIR SINE MIR -132 76 20 444 248 30 0 chr1 234689858 234689959 -7974394 + L2 LINE L2 3195 3298 -15 327 257 0 0 chr1 234689973 234690047 -7974306 - MLT1L LTR MaLR -394 221 148 940 225 0 0 chr1 234690048 234690221 -7974132 + MER5A DNA MER1_type 2 174 -15 325 300 40 0 chr1 234690575 234690675 -7973678 + MIR3 SINE MIR 90 193 -15 1246 171 31 40 chr1 234691683 234691898 -7972455 + AluJo SINE Alu 87 301 -11 186 43 0 0 chr1 234691898 234691921 -7972432 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 1246 171 31 40 chr1 234691921 234691933 -7972420 + AluJo SINE Alu 301 312 0 256 291 23 0 chr1 234693725 234693811 -7970542 - LTR33 LTR ERVL -53 468 381 2107 130 50 44 chr1 234694129 234694357 -7969996 - THE1B LTR MaLR 0 364 131 1872 158 0 7 chr1 234694357 234694675 -7969678 + AluSx SINE Alu 1 316 0 2107 130 50 44 chr1 234694675 234694807 -7969546 - THE1B LTR MaLR -233 131 1 1942 137 137 39 chr1 234694891 234695279 -7969074 + MSTB LTR MaLR 1 426 0 2052 177 85 7 chr1 234695280 234695716 -7968637 + MSTB-int LTR MaLR 2 471 -1180 3489 181 101 1 chr1 234695745 234696440 -7967913 + MSTB-int LTR MaLR 851 1614 -37 2051 166 62 52 chr1 234696522 234696944 -7967409 + MSTB LTR MaLR 1 426 0 24 0 0 0 chr1 234697751 234697775 -7966578 + AT_rich Low_complexity Low_complexity 1 24 0 2685 189 46 13 chr1 234698462 234699074 -7965279 + L1MB4 LINE L1 5548 6179 -1 1283 209 133 54 chr1 234699712 234700177 -7964176 + MLT1D LTR MaLR 1 502 -3 912 226 24 0 chr1 234700274 234700482 -7963871 - MER20 DNA MER1_type -1 218 6 2207 119 0 0 chr1 234700887 234701181 -7963172 - AluSx SINE Alu -18 294 1 2682 212 14 2 chr1 234701731 234702288 -7962065 - LTR31 LTR ERV1 -15 604 41 2359 87 0 0 chr1 234702488 234702786 -7961567 + AluY SINE Alu 1 298 -13 1280 229 101 24 chr1 234702819 234703156 -7961197 - MLT1A1 LTR MaLR -2 363 1 279 319 51 14 chr1 234704355 234704493 -7959860 + MIR3 SINE MIR 1 143 -65 237 320 40 13 chr1 234704550 234704625 -7959728 - MIR SINE MIR -112 96 20 550 115 0 0 chr1 234704636 234704714 -7959639 + MLT1D LTR MaLR 1 78 -427 254 29 29 0 chr1 234704756 234704791 -7959562 + (TC)n Simple_repeat Simple_repeat 1 36 0 208 135 19 19 chr1 234704818 234704870 -7959483 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1468 228 40 28 chr1 234704872 234705175 -7959178 - MLT2B2 LTR ERVL -52 502 191 201 74 0 0 chr1 234705175 234705202 -7959151 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1468 228 40 28 chr1 234705202 234705396 -7958957 - MLT2B2 LTR ERVL -363 191 1 * 1985 194 20 25 chr1 234705396 234705829 -7958524 + MLT1D LTR MaLR 75 505 0 22 35 0 0 chr1 234706502 234706531 -7957822 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr1 234706579 234706618 -7957735 + AT_rich Low_complexity Low_complexity 1 39 0 412 351 83 10 chr1 234706792 234706997 -7957356 + MIR SINE MIR 29 248 -14 408 323 71 25 chr1 234707316 234707598 -7956755 + L2 LINE L2 1216 1510 -1804 456 295 51 71 chr1 234707979 234708233 -7956120 + L2 LINE L2 1506 1754 -1560 2751 87 14 3 chr1 234708634 234709002 -7955351 + THE1C LTR MaLR 1 372 -3 238 289 12 0 chr1 234709563 234709646 -7954707 + (TA)n Simple_repeat Simple_repeat 2 85 0 253 319 60 43 chr1 234710363 234710479 -7953874 - L2 LINE L2 -2 3270 3153 730 169 14 35 chr1 234710479 234710621 -7953732 + AluJo SINE Alu 30 168 -144 1641 186 70 40 chr1 234710623 234710947 -7953406 + MER61D LTR ERV1 1 400 -101 2176 116 0 22 chr1 234710947 234711265 -7953088 + AluY SINE Alu 1 311 0 1641 186 70 40 chr1 234711265 234711369 -7952984 + MER61D LTR ERV1 400 499 -2 685 202 0 0 chr1 234711374 234711493 -7952860 + AluJo SINE Alu 170 288 -24 286 336 45 18 chr1 234711599 234711709 -7952644 - L2 LINE L2 -181 3091 2979 322 324 122 44 chr1 234711779 234712165 -7952188 - L2 LINE L2 -559 2755 2340 285 344 23 0 chr1 234712580 234712708 -7951645 + MER94 DNA DNA 4 134 0 2062 124 0 0 chr1 234712963 234713271 -7951082 + AluSx SINE Alu 1 308 0 254 95 24 0 chr1 234715489 234715531 -7948822 + (TA)n Simple_repeat Simple_repeat 2 44 0 1318 126 5 0 chr1 234715984 234716174 -7948179 - AluSx SINE Alu 0 312 122 207 0 0 0 chr1 234716174 234716197 -7948156 + (TG)n Simple_repeat Simple_repeat 2 24 0 392 157 60 0 chr1 234716252 234716335 -7948018 - U6 snRNA snRNA 0 107 20 2658 106 20 36 chr1 234716335 234716779 -7947574 - LTR3b LTR ERVK 0 437 1 770 196 5 11 chr1 234716852 234717041 -7947312 - L1 LINE L1 -3222 2924 2737 4579 102 50 52 chr1 234717048 234717952 -7946401 - SVA Other Other -955 1386 329 1294 180 35 7 chr1 234717952 234718235 -7946118 + AluSx SINE Alu 3 293 -19 1094 75 0 0 chr1 234718250 234718383 -7945970 - AluSx SINE Alu -180 133 1 1291 230 34 34 chr1 234718398 234718807 -7945546 - L1MA9 LINE L1 -38 6274 5866 1299 182 91 23 chr1 234719530 234719828 -7944525 + AluJo SINE Alu 1 316 0 25 31 0 0 chr1 234720104 234720136 -7944217 + AT_rich Low_complexity Low_complexity 1 32 0 193 330 8 42 chr1 234720217 234720335 -7944018 + L2 LINE L2 2372 2485 -829 25 0 0 0 chr1 234721515 234721540 -7942813 + AT_rich Low_complexity Low_complexity 1 25 0 691 236 27 62 chr1 234721551 234721776 -7942577 + MER58A DNA MER1_type 6 222 -2 231 367 93 49 chr1 234721913 234722139 -7942214 + L2 LINE L2 3016 3251 -21 1625 191 0 40 chr1 234722342 234722645 -7941708 - AluJo SINE Alu -21 291 1 180 152 0 0 chr1 234722936 234722969 -7941384 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1882 199 31 98 chr1 234723271 234723941 -7940412 - MLT1E2 LTR MaLR 0 626 2 665 275 156 15 chr1 234723983 234724252 -7940101 - MLT1I LTR MaLR 0 409 103 362 138 0 0 chr1 234725394 234725452 -7938901 - AluS SINE Alu -250 58 1 2216 107 3 3 chr1 234725858 234726158 -7938195 - AluSx SINE Alu -12 300 1 199 263 53 0 chr1 234726565 234726622 -7937731 - L2 LINE L2 0 3313 3254 30 0 0 61 chr1 234726624 234726652 -7937701 + AT_rich Low_complexity Low_complexity 1 26 -20 1818 110 106 0 chr1 234726652 234726916 -7937437 + AluSx SINE Alu 1 292 -20 30 0 0 61 chr1 234726916 234726936 -7937417 + AT_rich Low_complexity Low_complexity 26 46 0 448 342 162 25 chr1 234727263 234727658 -7936695 - L2 LINE L2 -501 2813 2365 29 0 0 0 chr1 234727770 234727799 -7936554 + AT_rich Low_complexity Low_complexity 1 29 0 250 250 0 0 chr1 234728069 234728133 -7936220 - L1MD3 LINE L1 -792 7203 7140 2201 81 0 3 chr1 234728133 234728451 -7935902 - AluY SINE Alu 0 317 1 262 206 0 16 chr1 234728482 234728545 -7935808 + CT-rich Low_complexity Low_complexity 2 63 0 1787 242 99 33 chr1 234728587 234729286 -7935067 - L1MD3 LINE L1 -1164 6831 6087 935 209 0 6 chr1 234729318 234729481 -7934872 - FRAM SINE Alu -15 161 1 882 246 83 26 chr1 234729484 234729902 -7934451 - L1ME1 LINE L1 -152 6014 5622 * 1089 220 43 58 chr1 234729897 234730342 -7934011 - L1ME1 LINE L1 -1883 4263 3826 252 332 92 48 chr1 234730865 234731094 -7933259 + L2 LINE L2 2808 3046 -226 219 275 29 14 chr1 234731290 234731359 -7932994 + L2 LINE L2 3199 3268 -4 2839 158 61 11 chr1 234732372 234732929 -7931424 - L1MB3 LINE L1 -7 6176 5592 1207 111 0 0 chr1 234732929 234733100 -7931253 - AluY SINE Alu 0 311 141 8051 219 33 41 chr1 234733100 234735039 -7929314 - L1MB3 LINE L1 -589 5594 3682 1989 103 62 3 chr1 234735039 234735329 -7929024 - AluSc SINE Alu -2 307 1 8051 219 33 41 chr1 234735329 234736062 -7928291 - L1MB3 LINE L1 -2501 3682 2945 336 250 31 0 chr1 234736079 234736175 -7928178 + MER58B DNA MER1_type 237 335 -6 1976 146 33 17 chr1 234737029 234737391 -7926962 - THE1C LTR MaLR 0 375 8 2506 60 0 32 chr1 234738268 234738584 -7925769 + AluY SINE Alu 1 306 -5 195 355 0 0 chr1 234738624 234738686 -7925667 - L3 LINE CR1 -1 1576 1515 227 250 100 12 chr1 234739048 234739128 -7925225 - L3 LINE CR1 -65 1512 1426 26 50 0 0 chr1 234739362 234739402 -7924951 + AT_rich Low_complexity Low_complexity 1 40 0 1662 118 40 15 chr1 234739669 234739941 -7924412 - AluSx SINE Alu 0 312 34 193 302 126 25 chr1 234740109 234740268 -7924085 + L3 LINE CR1 1145 1319 -258 33 80 0 0 chr1 234742140 234742215 -7922138 + AT_rich Low_complexity Low_complexity 1 75 0 5217 216 23 11 chr1 234743042 234745047 -7919306 - L1PA15 LINE L1 -7 6158 4131 4033 79 106 141 chr1 234745047 234745903 -7918450 + LTR12 LTR ERV1 1 826 0 5217 216 23 11 chr1 234745903 234745965 -7918388 - L1PA15 LINE L1 -2034 4131 4071 413 174 0 0 chr1 234745983 234746052 -7918301 + Tigger2 DNA MER2_type 1 69 -2649 * 1635 111 33 26 chr1 234746050 234746320 -7918033 + Tigger2 DNA MER2_type 2280 2551 -167 2284 102 0 0 chr1 234746348 234746642 -7917711 + AluSg SINE Alu 1 294 -16 848 196 98 0 chr1 234746650 234746823 -7917530 + Tigger2 DNA MER2_type 2526 2715 -3 1780 212 21 11 chr1 234746891 234747263 -7917090 - MLT1B LTR MaLR 0 390 15 601 203 8 23 chr1 234748229 234748362 -7915991 + FLAM_A SINE Alu 1 131 -2 2015 124 3 19 chr1 234749834 234750148 -7914205 - AluSx SINE Alu -3 309 1 234 318 24 12 chr1 234750181 234750266 -7914087 + MIR3 SINE MIR 95 180 -28 1494 173 35 32 chr1 234750408 234750755 -7913598 - L1MB8 LINE L1 -17 6161 5814 392 157 351 45 chr1 234750755 234750889 -7913464 + L1MB8 LINE L1 5632 5806 -372 30 59 0 0 chr1 234750897 234750948 -7913405 + AT_rich Low_complexity Low_complexity 1 51 0 1898 225 13 15 chr1 234751049 234751626 -7912727 - L1MB8 LINE L1 -465 5713 5139 225 132 0 0 chr1 234751626 234751664 -7912689 + (CA)n Simple_repeat Simple_repeat 2 39 0 4428 199 109 118 chr1 234751976 234752030 -7912323 - L1MC3 LINE L1 -13 8400 8347 2264 92 0 3 chr1 234752030 234752334 -7912019 - AluSg SINE Alu 0 303 1 2005 130 7 10 chr1 234752334 234752664 -7911689 - AluSx SINE Alu 0 312 1 4428 199 109 118 chr1 234752664 234752718 -7911635 - L1MC3 LINE L1 -65 8348 8295 1460 151 31 86 chr1 234752718 234753042 -7911311 + AluJo SINE Alu 1 306 -6 4428 199 109 118 chr1 234753042 234753984 -7910369 - L1MC3 LINE L1 -118 8295 7346 2279 95 7 0 chr1 234753984 234754279 -7910074 + AluSx SINE Alu 3 299 -13 4428 199 109 118 chr1 234754279 234754360 -7909993 - L1MC3 LINE L1 -1067 7346 7266 1496 144 35 133 chr1 234754360 234754728 -7909625 + MER7A DNA MER2_type 17 346 0 4428 199 109 118 chr1 234754728 234755655 -7908698 - L1MC3 LINE L1 -1147 7266 6332 2308 101 0 0 chr1 234755655 234755952 -7908401 + AluSg SINE Alu 3 299 -11 4428 199 109 118 chr1 234755952 234756165 -7908188 - L1MC3 LINE L1 -2081 6332 6119 2476 67 0 13 chr1 234756165 234756478 -7907875 - AluSc SINE Alu 0 309 1 4428 199 109 118 chr1 234756478 234757530 -7906823 - L1MC3 LINE L1 -2294 6119 4719 180 0 0 0 chr1 234757551 234757571 -7906782 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3681 257 59 43 chr1 234757632 234759241 -7905112 - L1MC3 LINE L1 -2023 4541 2960 243 0 0 0 chr1 234759241 234759268 -7905085 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1759 140 4 0 chr1 234759268 234759518 -7904835 - AluSx SINE Alu -27 285 35 3681 257 59 43 chr1 234759518 234759559 -7904794 - L1MC3 LINE L1 -3603 2961 2863 560 230 59 29 chr1 234759566 234759856 -7904497 - L1MC3 LINE L1 -4545 2019 1626 * 1635 247 24 50 chr1 234759847 234760198 -7904155 - L1MC3 LINE L1 -4851 1194 1097 2493 109 17 8 chr1 234760198 234760556 -7903797 - THE1B LTR MaLR -2 362 2 1635 247 24 50 chr1 234760556 234761071 -7903282 - L1MC3 LINE L1 -4948 1097 570 682 288 94 28 chr1 234761185 234761473 -7902880 - L1MC3 LINE L1 -5482 563 257 384 140 0 53 chr1 234761474 234761588 -7902765 + (CACTC)n Simple_repeat Simple_repeat 4 111 0 600 298 10 29 chr1 234761599 234761807 -7902546 - L1MC3 LINE L1 -5786 259 56 204 274 0 49 chr1 234761926 234762028 -7902325 + GA-rich Low_complexity Low_complexity 2 98 0 25 31 0 0 chr1 234762227 234762259 -7902094 + AT_rich Low_complexity Low_complexity 1 32 0 1495 272 41 74 chr1 234762274 234762880 -7901473 + MLT1E LTR MaLR 3 588 -5 264 272 98 11 chr1 234763479 234763571 -7900782 + MIR SINE MIR 97 196 -66 574 162 9 0 chr1 234763581 234763686 -7900667 - L1MA7 LINE L1 -416 5875 5770 1559 194 22 3 chr1 234763723 234764043 -7900310 - L1MA7 LINE L1 -488 5803 5478 2100 159 9 24 chr1 234764044 234764465 -7899888 + L1MA7 LINE L1 5875 6289 -2 306 0 0 0 chr1 234764766 234764800 -7899553 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr1 234764805 234764827 -7899526 + AT_rich Low_complexity Low_complexity 1 22 0 235 277 48 17 chr1 234765582 234765672 -7898681 - MIR SINE MIR -56 152 84 1675 181 7 3 chr1 234766037 234766325 -7898028 + AluJb SINE Alu 3 291 -21 290 294 33 33 chr1 234766408 234766561 -7897792 + MIR SINE MIR 110 262 0 2256 223 35 4 chr1 234766678 234767220 -7897133 - MER89 LTR ERV1 0 559 1 249 388 25 12 chr1 234767224 234767384 -7896969 + L2 LINE L2 2682 2843 -471 266 320 82 0 chr1 234767675 234767772 -7896581 + L2 LINE L2 3132 3236 -36 845 127 0 0 chr1 234768358 234768476 -7895877 + AluY SINE Alu 1 118 -193 180 97 0 0 chr1 234768476 234768507 -7895846 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2053 74 67 7 chr1 234769312 234769597 -7894756 - AluY SINE Alu -9 302 1 855 211 6 0 chr1 234769756 234769917 -7894436 - FRAM SINE Alu -9 167 6 3458 53 2 7 chr1 234770004 234770454 -7893899 - LTR7 LTR ERV1 -2 448 1 2277 118 0 13 chr1 234772509 234772686 -7891667 - AluSx SINE Alu -2 310 137 2214 92 0 0 chr1 234772686 234772969 -7891384 - AluSc SINE Alu -8 301 19 2277 118 0 13 chr1 234772969 234773105 -7891248 - AluSx SINE Alu -175 137 1 333 0 0 0 chr1 234773833 234773870 -7890483 + (A)n Simple_repeat Simple_repeat 1 37 0 1471 113 50 14 chr1 234774075 234774297 -7890056 - MER30 DNA MER1_type 0 230 1 1949 186 12 33 chr1 234774307 234774731 -7889622 - L1MC3 LINE L1 -167 7618 7204 1395 183 36 30 chr1 234774987 234775288 -7889065 + L1MD2 LINE L1 6047 6349 -10 1235 266 135 58 chr1 234775313 234776341 -7888012 - L1MC4a LINE L1 -1438 6370 5264 366 147 73 7 chr1 234776342 234776766 -7887587 + (TA)n Simple_repeat Simple_repeat 1 451 0 252 213 0 0 chr1 234776832 234776893 -7887460 + (TA)n Simple_repeat Simple_repeat 2 62 0 262 241 0 17 chr1 234777168 234777226 -7887127 + L2 LINE L2 3255 3311 -2 2357 102 0 0 chr1 234777586 234777889 -7886464 + AluSq SINE Alu 1 303 -10 26 0 0 0 chr1 234778757 234778783 -7885570 + AT_rich Low_complexity Low_complexity 1 26 0 232 354 101 6 chr1 234779592 234779750 -7884603 + MIR SINE MIR 51 223 -39 2308 92 0 0 chr1 234781417 234781712 -7882641 + AluY SINE Alu 1 295 -16 327 25 0 0 chr1 234782630 234782670 -7881683 + (TG)n Simple_repeat Simple_repeat 2 41 0 2342 91 0 0 chr1 234784555 234784853 -7879500 - AluY SINE Alu -13 298 1 1847 188 95 35 chr1 234784862 234785292 -7879061 - MLT2B1 LTR ERVL -64 456 1 945 286 75 16 chr1 234785358 234785746 -7878607 + LTR16A LTR ERVL 31 441 -9 444 322 78 43 chr1 234785749 234785927 -7878426 - LTR16C LTR ERVL -78 413 222 2356 58 17 0 chr1 234785927 234786222 -7878131 - AluY SINE Alu -7 304 5 444 322 78 43 chr1 234786222 234786298 -7878055 - LTR16C LTR ERVL -269 222 150 405 327 83 73 chr1 234786520 234787098 -7877255 + L1ME2 LINE L1 516 1099 -5020 1009 252 90 46 chr1 234787102 234787999 -7876354 + L1ME2 LINE L1 1115 6145 -2 2642 30 0 0 chr1 234788239 234788535 -7875818 + AluY SINE Alu 1 296 -15 373 278 129 24 chr1 234788545 234788800 -7875553 + L1ME3A LINE L1 5010 5291 -855 195 69 0 0 chr1 234789220 234789249 -7875104 + (A)n Simple_repeat Simple_repeat 1 29 0 389 212 13 1 chr1 234789258 234789370 -7874983 + L1ME3A LINE L1 5843 5956 -206 2297 96 7 3 chr1 234789655 234789958 -7874395 + AluSp SINE Alu 2 305 -8 1974 155 59 34 chr1 234790482 234791017 -7873336 - MLT2A2 LTR ERVL 0 554 1 622 293 58 0 chr1 234791022 234791227 -7873126 - MIR SINE MIR -40 222 6 2461 117 64 17 chr1 234792146 234792555 -7871798 - MSTA LTR MaLR 0 428 1 2239 88 0 3 chr1 234792967 234793282 -7871071 - AluSq SINE Alu 0 314 1 733 232 36 0 chr1 234793384 234793552 -7870801 + MIR SINE MIR 68 241 -21 2878 309 97 25 chr1 234793563 234794631 -7869722 + L2 LINE L2 1382 2639 -674 1906 107 50 4 chr1 234794631 234794912 -7869441 + AluSg SINE Alu 1 294 -16 2878 309 97 25 chr1 234794912 234795638 -7868715 + L2 LINE L2 2639 3311 -2 193 304 64 56 chr1 234795703 234795828 -7868525 - MIR SINE MIR -56 206 81 532 284 36 46 chr1 234797582 234797776 -7866577 - MIR SINE MIR -51 211 20 2597 49 0 0 chr1 234797984 234798288 -7866065 + AluY SINE Alu 1 304 -7 2189 118 0 6 chr1 234798998 234799311 -7865042 + AluSx SINE Alu 1 311 -1 2904 179 33 69 chr1 234799566 234800286 -7864067 + LTR8A LTR ERV1 34 727 0 2168 91 38 0 chr1 234801363 234801650 -7862703 + AluSg SINE Alu 1 298 -12 182 377 0 0 chr1 234802515 234802584 -7861769 + MIR SINE MIR 67 135 -127 * 193 309 37 81 chr1 234802575 234802711 -7861642 - L2 LINE L2 0 3272 3143 349 241 103 9 chr1 234802907 234803023 -7861330 - L1MC4 LINE L1 -605 7437 7311 331 250 11 11 chr1 234803230 234803318 -7861035 - MLT1H LTR MaLR -461 88 1 1861 127 60 24 chr1 234803634 234803965 -7860388 + MER61A LTR ERV1 1 343 0 204 40 0 0 chr1 234805032 234805057 -7859296 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr1 234805130 234805150 -7859203 + (CA)n Simple_repeat Simple_repeat 2 21 0 281 261 0 7 chr1 234805771 234805909 -7858444 + (TA)n Simple_repeat Simple_repeat 2 138 0 1811 180 39 30 chr1 234806585 234806946 -7857407 + THE1B LTR MaLR 1 364 0 6219 98 3 1 chr1 234808775 234809932 -7854421 + L1PB1 LINE L1 4991 6151 0 4416 180 50 15 chr1 234809977 234810861 -7853492 + L1MA7 LINE L1 5376 6290 -1 892 281 107 3 chr1 234811711 234811990 -7852363 + L1ME2 LINE L1 4752 5085 -1061 1770 112 0 0 chr1 234811990 234812223 -7852130 + AluSc SINE Alu 1 233 -76 892 281 107 3 chr1 234812223 234812334 -7852019 + L1ME2 LINE L1 5085 5183 -963 272 135 0 0 chr1 234812378 234812430 -7851923 + L1MC4 LINE L1 6652 6703 -1339 1442 239 127 18 chr1 234812579 234813090 -7851263 + L1ME2 LINE L1 5598 6164 0 4555 200 67 3 chr1 234813493 234814996 -7849357 + L1PBa LINE L1 1795 3395 -3467 1170 204 178 36 chr1 234815115 234815531 -7848822 - MLT1D LTR MaLR -9 496 22 874 245 24 5 chr1 234816073 234816285 -7848068 + MER20 DNA MER1_type 2 217 -2 211 247 123 27 chr1 234816410 234816483 -7847870 - L2 LINE L2 -15 3298 3219 275 328 0 9 chr1 234816535 234816651 -7847702 + (TA)n Simple_repeat Simple_repeat 1 115 0 28 0 0 0 chr1 234818316 234818344 -7846009 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr1 234819241 234819266 -7845087 + (CA)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr1 234821274 234821308 -7843045 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 68 0 0 chr1 234821437 234821481 -7842872 + AT_rich Low_complexity Low_complexity 1 44 0 215 192 61 101 chr1 234821913 234822012 -7842341 + MIR SINE MIR 118 212 -50 323 185 0 0 chr1 234823234 234823299 -7841054 - MLT1E LTR MaLR -4 563 499 2278 83 0 29 chr1 234823299 234823612 -7840741 + AluY SINE Alu 1 304 -7 321 318 0 27 chr1 234823642 234823790 -7840563 + L1MCc LINE L1 165 308 -6115 345 214 29 0 chr1 234823902 234823972 -7840381 - MLT1E LTR MaLR -65 528 457 685 216 16 22 chr1 234823973 234824158 -7840195 - L1MC3 LINE L1 -1530 6324 6141 2049 162 50 0 chr1 234824160 234824519 -7839834 - MER57A LTR ERV1 0 403 27 2415 231 74 10 chr1 234824537 234825594 -7838759 - L1MC3 LINE L1 -743 5472 4864 1879 207 61 114 chr1 234825612 234826485 -7837868 + LTR1B LTR ERV1 1 826 0 409 254 125 19 chr1 234826560 234826824 -7837529 - L1MC3 LINE L1 -5273 1123 832 1583 158 68 0 chr1 234826872 234827137 -7837216 + AluSx SINE Alu 1 283 -29 230 57 0 29 chr1 234827137 234827172 -7837181 + (TA)n Simple_repeat Simple_repeat 1 34 0 855 166 0 0 chr1 234827172 234827329 -7837024 + (TG)n Simple_repeat Simple_repeat 2 158 0 340 349 54 69 chr1 234827357 234827707 -7836646 - L1MC3 LINE L1 -5654 742 398 234 250 0 31 chr1 234828688 234828752 -7835601 + CT-rich Low_complexity Low_complexity 2 63 0 468 18 0 0 chr1 234828937 234828992 -7835361 + AluSq/x SINE Alu 81 135 -177 297 0 0 0 chr1 234829616 234829649 -7834704 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 196 30 15 chr1 234829871 234830004 -7834349 + (TA)n Simple_repeat Simple_repeat 2 136 0 180 200 0 0 chr1 234830597 234830642 -7833711 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr1 234830779 234830801 -7833552 + AT_rich Low_complexity Low_complexity 1 22 0 195 283 81 71 chr1 234831383 234831482 -7832871 - MER5B DNA MER1_type -76 102 3 2039 128 83 3 chr1 234833580 234833916 -7830437 + THE1B LTR MaLR 2 364 0 222 296 0 42 chr1 234834008 234834079 -7830274 + L2 LINE L2 3246 3313 0 405 0 0 0 chr1 234837137 234837182 -7827171 + (TTATA)n Simple_repeat Simple_repeat 1 45 0 2517 126 25 126 chr1 234839269 234839752 -7824601 - Tigger2 DNA MER2_type 0 2718 1 2123 116 3 13 chr1 234840809 234841110 -7823243 - AluSg SINE Alu -12 298 1 344 159 34 45 chr1 234841201 234841289 -7823064 - LTR9 LTR ERV1 -83 529 443 238 330 61 0 chr1 234841315 234841430 -7822923 - MIR SINE MIR -5 257 136 227 348 181 33 chr1 234841804 234842074 -7822279 - L2 LINE L2 -337 2977 2668 423 242 11 0 chr1 234842299 234842394 -7821959 - Tigger7 DNA MER2_type 0 2487 2392 942 203 10 5 chr1 234842397 234842589 -7821764 - Tigger7 DNA MER2_type -2220 267 75 460 67 0 27 chr1 234842981 234843056 -7821297 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 712 169 8 0 chr1 234843060 234843184 -7821169 - FLAM_C SINE Alu -18 125 1 445 216 9 18 chr1 234843493 234843604 -7820749 - MER3 DNA MER1_type -6 203 94 248 168 22 0 chr1 234843611 234843770 -7820583 + AluJo/FLAM SINE Alu 1 132 -170 958 314 110 46 chr1 234843978 234844038 -7820315 + L2 LINE L2 2398 2453 -860 180 0 0 0 chr1 234844038 234844058 -7820295 + (CAA)n Simple_repeat Simple_repeat 2 21 0 958 314 110 46 chr1 234844058 234844863 -7819490 + L2 LINE L2 2453 3311 -2 606 182 41 0 chr1 234845072 234845314 -7819039 - L1MA7 LINE L1 -11 6280 5923 24 67 0 0 chr1 234845596 234845641 -7818712 + AT_rich Low_complexity Low_complexity 1 45 0 180 400 21 0 chr1 234846910 234847005 -7817348 + MIR SINE MIR 19 115 -93 343 244 58 39 chr1 234847430 234847586 -7816767 + LTR37B LTR ERV1 247 405 -63 24 0 0 0 chr1 234847733 234847757 -7816596 + AT_rich Low_complexity Low_complexity 1 24 0 579 13 13 26 chr1 234849523 234849599 -7814754 + THE1B LTR MaLR 228 302 -62 213 65 0 0 chr1 234849602 234849633 -7814720 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 964 176 0 13 chr1 234850265 234850424 -7813929 - AluJb SINE Alu -9 303 147 353 208 8 75 chr1 234851158 234851258 -7813095 - MER34C LTR ERV1 0 585 493 2226 100 3 0 chr1 234851258 234851558 -7812795 + AluSq SINE Alu 1 301 -12 353 208 8 75 chr1 234851558 234851577 -7812776 - MER34C LTR ERV1 -92 493 474 687 198 19 0 chr1 234851687 234851844 -7812509 + L1ME3A LINE L1 4901 5060 -1086 2286 101 0 0 chr1 234851860 234852158 -7812195 - AluSg SINE Alu -12 298 1 262 217 17 0 chr1 234853093 234853153 -7811200 + GA-rich Low_complexity Low_complexity 2 62 0 252 0 0 0 chr1 234853386 234853414 -7810939 + (TA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr1 234853724 234853746 -7810607 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 234854155 234854177 -7810176 + AT_rich Low_complexity Low_complexity 1 22 0 243 315 0 0 chr1 234855103 234855157 -7809196 + L2 LINE L2 3210 3263 -9 3768 202 72 16 chr1 234856677 234857480 -7806873 - MER21B LTR ERV1 -15 848 1 25 75 0 0 chr1 234858174 234858227 -7806126 + AT_rich Low_complexity Low_complexity 1 53 0 336 232 0 14 chr1 234858235 234858302 -7806051 + Tigger5 DNA MER2_type 10 75 -2248 426 195 0 35 chr1 234858302 234858389 -7805964 - Tigger5 DNA MER2_type -1 2322 2239 389 222 12 0 chr1 234858374 234858455 -7805898 + Tigger5 DNA MER2_type 2242 2323 0 * 29 0 0 0 chr1 234858787 234858816 -7805537 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 234858868 234858891 -7805462 + AT_rich Low_complexity Low_complexity 1 23 0 1827 172 0 0 chr1 234858917 234859220 -7805133 - AluJb SINE Alu -5 307 5 24 32 0 0 chr1 234859423 234859454 -7804899 + AT_rich Low_complexity Low_complexity 1 31 0 352 300 171 16 chr1 234859592 234860139 -7804214 + L1ME3A LINE L1 5313 5946 -224 1676 163 71 15 chr1 234860167 234860492 -7803861 - MER61A LTR ERV1 0 343 1 22298 88 34 2 chr1 234860492 234864166 -7800187 - MER61A-int LTR ERV1 0 5217 1320 2070 180 79 13 chr1 234864159 234864825 -7799528 - MER61A-int LTR ERV1 -4440 777 1 * 1801 162 58 15 chr1 234864825 234865153 -7799200 - MER61A LTR ERV1 0 343 2 23 54 0 0 chr1 234865747 234865784 -7798569 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr1 234865813 234865837 -7798516 + AT_rich Low_complexity Low_complexity 1 24 0 362 74 19 0 chr1 234867498 234867552 -7796801 + (GA)n Simple_repeat Simple_repeat 2 56 0 1312 191 69 28 chr1 234867793 234868081 -7796272 - AluJo SINE Alu -12 300 1 722 191 8 0 chr1 234868086 234868217 -7796136 - FLAM_C SINE Alu 0 133 2 25 0 0 0 chr1 234868875 234868900 -7795453 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 234871708 234871738 -7792615 + AT_rich Low_complexity Low_complexity 1 30 0 414 259 18 9 chr1 234871971 234872083 -7792270 + MER81 DNA DNA 2 114 0 378 290 92 20 chr1 234872306 234872609 -7791744 + L1MC/D LINE L1 3658 3982 -2164 519 319 57 13 chr1 234873033 234873347 -7791006 + L1MC/D LINE L1 4982 5309 -837 269 293 28 61 chr1 234873378 234873481 -7790872 + L1MC/D LINE L1 5382 5478 -2330 2261 62 48 0 chr1 234873481 234873772 -7790581 + AluY SINE Alu 1 305 -6 269 293 28 61 chr1 234873772 234873849 -7790504 + L1MC/D LINE L1 5478 5556 -2252 2336 107 0 7 chr1 234873945 234874253 -7790100 + AluSx SINE Alu 1 306 -6 848 225 0 6 chr1 234874546 234874706 -7789647 + FRAM SINE Alu 1 156 -20 26 82 0 0 chr1 234874838 234874899 -7789454 + AT_rich Low_complexity Low_complexity 1 61 0 63 36 0 0 chr1 234875021 234875105 -7789248 + AT_rich Low_complexity Low_complexity 1 84 0 329 121 79 0 chr1 234875105 234875270 -7789083 + (TA)n Simple_repeat Simple_repeat 2 179 0 266 85 68 62 chr1 234875280 234875457 -7788896 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 57 16 0 0 chr1 234875464 234875528 -7788825 + AT_rich Low_complexity Low_complexity 1 64 0 302 224 52 8 chr1 234875809 234875943 -7788410 + (TA)n Simple_repeat Simple_repeat 1 140 0 597 132 0 28 chr1 234876074 234876180 -7788173 + L1PA15 LINE L1 6063 6165 0 2371 108 30 21 chr1 234876253 234876625 -7787728 + THE1C LTR MaLR 1 375 0 465 240 74 78 chr1 234876925 234877183 -7787170 - HAL1b LINE L1 -517 831 575 353 273 44 60 chr1 234877677 234877860 -7786493 - L1ME LINE L1 -372 5749 5570 456 127 9 109 chr1 234877934 234878044 -7786309 - L1PA14 LINE L1 -633 5528 5430 977 121 29 0 chr1 234878044 234878184 -7786169 + L1PA14 LINE L1 5534 5677 -484 299 0 0 0 chr1 234878184 234878217 -7786136 + U2 snRNA snRNA 1 33 -155 3123 119 16 4 chr1 234878217 234878712 -7785641 + L1PA14 LINE L1 5661 6161 0 2172 110 51 34 chr1 234878941 234879297 -7785056 + THE1B LTR MaLR 1 362 -2 21 0 0 0 chr1 234880088 234880109 -7784244 + AT_rich Low_complexity Low_complexity 1 21 0 555 181 225 22 chr1 234881122 234881304 -7783049 + L1MA10 LINE L1 6032 6250 -84 570 30 0 0 chr1 234881316 234881383 -7782970 - L1PA3 LINE L1 -295 5860 5794 2485 18 3 0 chr1 234881383 234881666 -7782687 + L1PA3 LINE L1 5865 6151 -4 275 140 0 18 chr1 234881703 234881760 -7782593 + L1MA10 LINE L1 6278 6333 -1 362 325 105 39 chr1 234882580 234882866 -7781487 + L1MEd LINE L1 566 870 -5249 23 33 0 0 chr1 234883151 234883181 -7781172 + AT_rich Low_complexity Low_complexity 1 30 0 350 224 21 70 chr1 234883239 234883382 -7780971 + L1ME LINE L1 4550 4685 -1461 1965 94 0 0 chr1 234883382 234883638 -7780715 - AluY SINE Alu -13 298 43 400 167 0 13 chr1 234883740 234883818 -7780535 - AluY SINE Alu -222 89 13 527 311 67 39 chr1 234883877 234884305 -7780048 + L1ME LINE L1 4747 5161 -1003 1793 171 0 31 chr1 234884305 234884626 -7779727 + AluJb SINE Alu 2 312 0 527 311 67 39 chr1 234884626 234884672 -7779681 + L1ME LINE L1 5161 5204 -960 2251 91 3 38 chr1 234884672 234884991 -7779362 + AluSp SINE Alu 1 308 -5 527 311 67 39 chr1 234884991 234885490 -7778863 + L1ME LINE L1 5204 5748 -416 27 62 0 0 chr1 234885814 234885862 -7778491 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 234885903 234885925 -7778428 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr1 234886263 234886302 -7778051 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 234887146 234887167 -7777186 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr1 234887629 234887671 -7776682 + AT_rich Low_complexity Low_complexity 1 42 0 578 348 58 20 chr1 234888273 234888718 -7775635 + HERVL LTR ERVL 910 1371 -3625 699 107 34 23 chr1 234888897 234889074 -7775279 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2256 173 41 57 chr1 234889097 234889636 -7774717 + MER21A LTR ERV1 330 916 -15 1062 327 67 37 chr1 234889713 234890766 -7773587 + HERVL LTR ERVL 3082 4166 -1488 424 337 100 14 chr1 234891009 234891300 -7773053 + LTR16C LTR ERVL 4 319 -172 285 133 40 107 chr1 234891338 234891413 -7772940 + LTR16C LTR ERVL 408 477 -14 210 343 36 36 chr1 234892714 234892851 -7771502 + L2 LINE L2 976 1112 -2202 294 294 82 29 chr1 234893509 234893679 -7770674 + MIR SINE MIR 28 206 -56 22 56 0 0 chr1 234894047 234894083 -7770270 + AT_rich Low_complexity Low_complexity 1 36 0 969 253 55 7 chr1 234894314 234894622 -7769731 + MER33 DNA MER1_type 2 324 0 1714 170 51 183 chr1 234894962 234895595 -7768758 + LTR8A LTR ERV1 34 542 -185 2012 102 0 7 chr1 234895595 234895869 -7768484 + AluY SINE Alu 38 309 -2 1714 170 51 183 chr1 234895869 234896034 -7768319 + LTR8A LTR ERV1 542 727 0 486 300 15 0 chr1 234897051 234897181 -7767172 + MER5A DNA MER1_type 58 189 0 203 349 35 0 chr1 234898551 234898637 -7765716 + L2 LINE L2 3183 3271 -1 513 304 135 42 chr1 234899571 234899979 -7764374 - MLT1J1 LTR MaLR 0 446 1 32 0 0 0 chr1 234900422 234900454 -7763899 + AT_rich Low_complexity Low_complexity 1 32 0 1871 155 0 21 chr1 234900456 234900747 -7763606 - AluSx SINE Alu -27 285 1 30 27 0 0 chr1 234901033 234901070 -7763283 + AT_rich Low_complexity Low_complexity 1 37 0 324 277 82 61 chr1 234901216 234901447 -7762906 - L1ME4a LINE L1 -194 5927 5692 2253 111 0 0 chr1 234901542 234901840 -7762513 - AluSc SINE Alu -11 298 1 223 236 0 18 chr1 234901875 234901930 -7762423 + CT-rich Low_complexity Low_complexity 1 54 0 325 262 90 33 chr1 234901933 234902055 -7762298 - L2 LINE L2 -6 3307 3179 1119 331 75 38 chr1 234902254 234902612 -7761741 - L2 LINE L2 -613 2701 2358 1458 181 41 84 chr1 234902612 234903004 -7761349 - THE1C LTR MaLR 0 375 1 1119 331 75 38 chr1 234903004 234903387 -7760966 - L2 LINE L2 -956 2358 1932 2234 109 0 0 chr1 234904056 234904349 -7760004 - AluSc SINE Alu -16 293 1 1949 148 39 15 chr1 234905279 234905609 -7758744 + THE1B LTR MaLR 27 364 0 305 311 195 33 chr1 234905798 234906219 -7758134 + L2 LINE L2 2364 2852 -462 923 126 145 42 chr1 234906671 234906912 -7757441 - Tigger4(Zombi) DNA MER2_type 0 2731 1 405 290 58 54 chr1 234907046 234907366 -7756987 + L1MC4a LINE L1 5540 5735 -386 1554 165 0 0 chr1 234907366 234907608 -7756745 - AluSx SINE Alu -8 304 63 405 290 58 54 chr1 234907608 234907656 -7756697 + L1MC4a LINE L1 5735 5781 -340 246 176 0 0 chr1 234907675 234907726 -7756627 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 2023 129 20 0 chr1 234907926 234908247 -7756106 + AluSc SINE Alu 1 327 0 6235 181 157 49 chr1 234908286 234909870 -7754483 - MER52A LTR ERV1 0 1755 1 25 0 0 0 chr1 234909969 234909994 -7754359 + AT_rich Low_complexity Low_complexity 1 25 0 300 299 66 15 chr1 234909999 234910136 -7754217 + L1ME1 LINE L1 5122 5265 -881 353 302 82 38 chr1 234910176 234910603 -7753750 + L1ME1 LINE L1 5412 5857 -309 227 342 27 18 chr1 234911111 234911222 -7753131 - L2 LINE L2 -5 3308 3197 260 27 27 0 chr1 234911847 234911884 -7752469 + (TG)n Simple_repeat Simple_repeat 1 38 0 574 284 25 30 chr1 234913054 234913290 -7751063 - L1ME2 LINE L1 -13 6151 5917 1228 246 86 42 chr1 234913370 234913667 -7750686 - L1ME2 LINE L1 -258 5908 5579 1860 175 3 0 chr1 234913667 234913958 -7750395 - AluJb SINE Alu -16 296 5 1228 246 86 42 chr1 234913958 234914163 -7750190 - L1ME2 LINE L1 -587 5579 5384 1879 110 49 0 chr1 234914763 234915055 -7749298 + AluSg SINE Alu 6 310 0 333 265 78 10 chr1 234916339 234916441 -7747912 - MIR SINE MIR -131 131 23 25 0 0 0 chr1 234918060 234918085 -7746268 + AT_rich Low_complexity Low_complexity 1 25 0 1933 209 25 22 chr1 234918129 234918806 -7745547 - L1MC/D LINE L1 -693 5666 4982 225 0 0 0 chr1 234919088 234919113 -7745240 + (T)n Simple_repeat Simple_repeat 1 25 0 1786 119 48 0 chr1 234920186 234920474 -7743879 + AluSx SINE Alu 1 301 0 237 159 0 0 chr1 234920530 234920574 -7743779 + (TA)n Simple_repeat Simple_repeat 2 45 0 2377 71 3 3 chr1 234920699 234921010 -7743343 - AluY SINE Alu 0 311 1 33 0 0 0 chr1 234921821 234921854 -7742499 + AT_rich Low_complexity Low_complexity 1 33 0 694 301 37 0 chr1 234922119 234922335 -7742018 - MER58A DNA MER1_type 0 224 1 253 200 0 0 chr1 234922359 234922404 -7741949 - L2 LINE L2 0 3272 3228 2442 81 0 0 chr1 234922909 234923207 -7741146 - AluSc SINE Alu -9 300 3 377 232 37 0 chr1 234923987 234924069 -7740284 + MER7A DNA MER2_type 1 83 -263 24 0 0 0 chr1 234924069 234924093 -7740260 + AT_rich Low_complexity Low_complexity 1 24 0 2511 95 17 0 chr1 234924096 234924445 -7739908 - THE1A LTR MaLR 0 355 1 11377 106 7 1 chr1 234924445 234925528 -7738825 - THE1A-int LTR MaLR 0 1580 482 2216 91 11 0 chr1 234925528 234925814 -7738539 - AluSc SINE Alu -6 303 15 11377 106 7 1 chr1 234925814 234926300 -7738053 - THE1A-int LTR MaLR -1098 482 1 2384 101 26 0 chr1 234926300 234926646 -7737707 - THE1A LTR MaLR 0 355 1 4956 113 26 9 chr1 234926646 234927415 -7736938 - L1PB1 LINE L1 -13 6138 5357 2112 248 26 2 chr1 234927415 234927999 -7736354 + L1PB1 LINE L1 4759 5356 -790 1506 187 3 3 chr1 234927999 234928282 -7736071 + MER7A DNA MER2_type 65 345 -1 306 0 0 0 chr1 234929000 234929034 -7735319 + (TG)n Simple_repeat Simple_repeat 2 35 0 1770 164 19 13 chr1 234929119 234929429 -7734924 - MSTB LTR MaLR 0 426 115 309 253 63 63 chr1 234931578 234931684 -7732669 + MIR SINE MIR 103 211 -51 2226 109 30 0 chr1 234931684 234931987 -7732366 - AluSx SINE Alu 0 312 1 309 253 63 63 chr1 234931987 234932038 -7732315 + MIR SINE MIR 210 260 -2 1569 121 0 5 chr1 234932661 234932884 -7731469 - AluSp SINE Alu -91 222 1 268 139 63 25 chr1 234932925 234933004 -7731349 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 257 233 35 103 chr1 234933738 234933854 -7730499 - MIR SINE MIR -16 246 139 2232 110 3 3 chr1 234934008 234934318 -7730035 + AluSg SINE Alu 1 310 0 217 175 127 16 chr1 234934445 234934508 -7729845 + MIR SINE MIR 57 126 -82 1765 165 98 42 chr1 234935122 234935529 -7728824 - MSTB1 LTR MaLR -2 430 1 276 275 35 18 chr1 234937949 234938120 -7726233 + L1M4 LINE L1 3035 3208 -2938 246 81 0 0 chr1 234938176 234938213 -7726140 + (GA)n Simple_repeat Simple_repeat 2 38 0 252 59 0 0 chr1 234938263 234938297 -7726056 + (TG)n Simple_repeat Simple_repeat 2 35 0 1526 194 21 21 chr1 234939344 234939633 -7724720 - AluJo SINE Alu -23 289 1 387 176 15 0 chr1 234939994 234940062 -7724291 + Tigger2 DNA MER2_type 1 69 -2649 * 2590 139 27 11 chr1 234940051 234940489 -7723864 + Tigger2 DNA MER2_type 2273 2717 -1 2430 112 19 16 chr1 234940714 234941088 -7723265 + THE1C LTR MaLR 1 375 0 1047 325 67 35 chr1 234942601 234943309 -7721044 - L2 LINE L2 0 3313 2576 2143 121 74 0 chr1 234943309 234943648 -7720705 - THE1B LTR MaLR 0 364 1 1047 325 67 35 chr1 234943648 234943707 -7720646 - L2 LINE L2 -737 2576 2520 2018 218 57 20 chr1 234943716 234944171 -7720182 + MER70A LTR ERVL 1 472 0 3656 204 53 12 chr1 234944365 234945211 -7719142 + MER70A-int LTR ERVL 224 1191 -3832 1751 201 9 0 chr1 234945213 234945537 -7718816 + MER70A-int LTR ERVL 1623 1949 -3074 1461 217 52 0 chr1 234945559 234945845 -7718508 + MER70A-int LTR ERVL 2235 2535 -2488 952 240 108 51 chr1 234945850 234946259 -7718094 - L2 LINE L2 -813 2501 2070 2238 112 3 0 chr1 234946317 234946612 -7717741 - AluSx SINE Alu -16 296 1 347 301 99 28 chr1 234947192 234947587 -7716766 - L1M4 LINE L1 -1901 4245 3823 213 154 0 0 chr1 234950160 234950199 -7714154 + (TA)n Simple_repeat Simple_repeat 2 40 0 1085 175 16 36 chr1 234950284 234950536 -7713817 + L1MD3 LINE L1 7749 7995 0 26 30 0 0 chr1 234951309 234951342 -7713011 + AT_rich Low_complexity Low_complexity 1 33 0 1446 242 58 11 chr1 234952039 234952504 -7711849 + L1M3c LINE L1 1476 1939 -4551 381 157 0 0 chr1 234952501 234952571 -7711782 + L1MD3 LINE L1 7926 7995 0 * 847 229 135 51 chr1 234952651 234952687 -7711666 + L1MDa LINE L1 1969 2001 -4539 1897 177 121 5 chr1 234952687 234953100 -7711253 - LOR1b LTR ERV1 0 461 1 847 229 135 51 chr1 234953100 234953551 -7710802 + L1MDa LINE L1 2001 2497 -4043 2542 264 69 60 chr1 234953606 234953896 -7710457 + L1MDa LINE L1 2492 2778 -3762 2381 87 3 6 chr1 234953896 234954208 -7710145 + AluSp SINE Alu 1 311 -2 2542 264 69 60 chr1 234954208 234954402 -7709951 + L1MDa LINE L1 2778 2969 -3571 2150 119 0 0 chr1 234954402 234954695 -7709658 - AluSq SINE Alu -20 293 1 2542 264 69 60 chr1 234954695 234956105 -7708248 + L1MDa LINE L1 2969 4402 -2138 1817 258 33 26 chr1 234956111 234956530 -7707823 + L1MDa LINE L1 4798 5226 -1314 2063 132 3 0 chr1 234956530 234956841 -7707512 + AluSp SINE Alu 1 312 -1 1817 258 33 26 chr1 234956841 234957180 -7707173 + L1MDa LINE L1 5226 5561 -979 1207 252 13 41 chr1 234957204 234957522 -7706831 - MLT2B1 LTR ERVL -10 510 202 1093 202 0 10 chr1 234957512 234957710 -7706643 + MLT1A1 LTR MaLR 170 365 0 * 762 192 78 1 chr1 234957715 234957981 -7706372 + L1MDa LINE L1 5578 5862 -743 265 131 0 62 chr1 234958180 234958310 -7706043 + (TA)n Simple_repeat Simple_repeat 2 123 0 444 120 0 63 chr1 234958327 234958518 -7705835 + (TA)n Simple_repeat Simple_repeat 1 179 0 2486 78 0 0 chr1 234958694 234959035 -7705318 - AluSc SINE Alu 0 341 1 362 289 134 10 chr1 234959077 234959271 -7705082 + MLT1J LTR MaLR 292 509 -2 2258 60 42 0 chr1 234959534 234959817 -7704536 + AluY SINE Alu 1 295 -16 204 236 36 55 chr1 234959951 234960061 -7704292 + A-rich Low_complexity Low_complexity 6 113 0 986 221 45 96 chr1 234961782 234962135 -7702218 + MLT1D LTR MaLR 1 335 -170 241 329 30 78 chr1 234964328 234964495 -7699858 + MER5A DNA MER1_type 31 189 0 271 410 38 24 chr1 234965022 234965232 -7699121 - L3 LINE CR1 -148 1429 1217 734 176 0 22 chr1 234965284 234965420 -7698933 - FLAM_A SINE Alu 0 133 1 1717 212 148 60 chr1 234966186 234966231 -7698122 - LTR65 LTR ERV1 -29 640 600 2155 125 3 0 chr1 234966231 234966534 -7697819 - AluSp SINE Alu -9 304 1 1717 212 148 60 chr1 234966534 234967074 -7697279 - LTR65 LTR ERV1 -69 600 3 728 339 78 8 chr1 234967631 234967798 -7696555 + LTR33 LTR ERVL 109 263 -258 2470 79 3 0 chr1 234967798 234968101 -7696252 - AluSp SINE Alu -9 304 1 728 339 78 8 chr1 234968101 234968319 -7696034 + LTR33 LTR ERVL 263 521 0 188 365 19 28 chr1 234968658 234968765 -7695588 - L3 LINE CR1 -1023 554 449 25 31 0 0 chr1 234969961 234969993 -7694360 + AT_rich Low_complexity Low_complexity 1 32 0 325 261 84 17 chr1 234971188 234971307 -7693046 - L1MEc LINE L1 -5486 910 784 423 232 81 70 chr1 234971349 234971534 -7692819 - MER3 DNA MER1_type -16 193 7 495 314 73 61 chr1 234971545 234971969 -7692384 - L1MEc LINE L1 -5659 737 309 231 203 63 13 chr1 234972203 234972282 -7692071 - L1ME LINE L1 -2391 3689 3607 2326 53 0 3 chr1 234972356 234972639 -7691714 + AluY SINE Alu 1 282 -29 1167 267 28 66 chr1 234972654 234973126 -7691227 + MLT1D LTR MaLR 52 505 0 463 265 73 56 chr1 234973143 234973622 -7690731 - L1ME LINE L1 -2506 3574 3088 574 139 20 0 chr1 234973636 234973737 -7690616 - L1PA16 LINE L1 -9 6157 6055 526 321 73 18 chr1 234973773 234974292 -7690061 - L1ME LINE L1 -4839 1139 695 1751 174 10 7 chr1 234975263 234975562 -7688791 + AluJo SINE Alu 1 300 -12 2203 91 11 0 chr1 234976218 234976548 -7687805 - AluSx SINE Alu 0 312 1 2002 182 8 10 chr1 234977201 234977592 -7686761 - MLT1B LTR MaLR 0 390 1 2075 126 3 3 chr1 234979366 234979659 -7684694 + AluSc SINE Alu 1 293 -16 429 129 0 0 chr1 234981400 234981470 -7682883 + (A)n Simple_repeat Simple_repeat 1 70 0 2009 102 13 36 chr1 234981663 234981968 -7682385 - AluSx SINE Alu -14 298 1 183 80 0 0 chr1 234982412 234982437 -7681916 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 336 138 0 0 chr1 234983607 234983665 -7680688 + (TG)n Simple_repeat Simple_repeat 1 58 0 2078 65 3 101 chr1 234984657 234984995 -7679358 + AluSc SINE Alu 1 305 -4 748 254 29 0 chr1 234985287 234985492 -7678861 - L1MA6 LINE L1 -6 6294 6084 448 284 52 4 chr1 234985894 234986037 -7678316 + MLT1H LTR MaLR 416 549 0 531 246 25 8 chr1 234987011 234987133 -7677220 - L2 LINE L2 0 3313 3190 1066 215 57 37 chr1 234987146 234987500 -7676853 - LTR52 LTR ERVL -36 385 25 3957 287 72 40 chr1 234987521 234989504 -7674849 - LTR52-int LTR ERVL -1 3555 1511 1775 104 34 34 chr1 234989767 234990035 -7674318 + AluSg SINE Alu 25 292 -18 187 261 0 22 chr1 234990569 234990615 -7673738 - L2 LINE L2 -15 3257 3213 289 308 8 26 chr1 234990655 234990772 -7673581 - MIR SINE MIR -128 134 20 28 48 0 0 chr1 234991694 234991736 -7672617 + AT_rich Low_complexity Low_complexity 1 42 0 1534 220 41 28 chr1 234992407 234992798 -7671555 - MSTD LTR MaLR 0 396 1 1075 261 67 0 chr1 234993815 234994083 -7670270 + AluJo SINE Alu 1 286 -16 218 274 36 24 chr1 234994534 234994618 -7669735 - MIR SINE MIR -3 259 175 520 316 85 6 chr1 234994630 234994807 -7669546 + MIR SINE MIR 1 191 -71 793 328 132 24 chr1 234995212 234995981 -7668372 + L2 LINE L2 2429 3113 -200 312 27 0 0 chr1 234995981 234996018 -7668335 + (CA)n Simple_repeat Simple_repeat 2 38 0 255 103 0 0 chr1 234996023 234996062 -7668291 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 793 328 132 24 chr1 234996062 234996074 -7668279 + L2 LINE L2 3116 3310 -3 2304 63 0 27 chr1 234996511 234996812 -7667541 - AluY SINE Alu -18 293 1 721 210 9 82 chr1 234996998 234997217 -7667136 - MER3 DNA MER1_type -6 203 1 21 0 0 0 chr1 234998189 234998210 -7666143 + AT_rich Low_complexity Low_complexity 1 21 0 708 230 15 25 chr1 234998566 234998766 -7665587 + MER33 DNA MER1_type 1 198 -126 359 266 43 0 chr1 234999105 234999199 -7665154 + MER5A DNA MER1_type 92 189 0 263 252 309 16 chr1 234999835 234999958 -7664395 - MER5A DNA MER1_type -27 162 4 182 292 42 28 chr1 234999979 235000051 -7664302 + MER5A DNA MER1_type 117 189 0 280 356 7 37 chr1 235000079 235000214 -7664139 + MER5B DNA MER1_type 16 146 -32 1754 230 9 71 chr1 235000214 235000749 -7663604 + MLT1D LTR MaLR 4 505 0 391 80 0 0 chr1 235002117 235002167 -7662186 + Tigger3b DNA MER2_type 53 102 -1129 * 2245 100 95 20 chr1 235002165 235002574 -7661779 + Tigger3b DNA MER2_type 274 713 -518 324 0 0 0 chr1 235003042 235003078 -7661275 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1755 251 62 11 chr1 235003199 235003764 -7660589 - L1MC4 LINE L1 -130 7912 7319 1049 251 47 0 chr1 235003793 235004112 -7660241 - L1MD3 LINE L1 -924 7071 6738 33 25 0 0 chr1 235004392 235004432 -7659921 + AT_rich Low_complexity Low_complexity 1 40 0 294 279 38 17 chr1 235004432 235004553 -7659800 - L1MC4 LINE L1 -1054 6788 6604 784 238 70 50 chr1 235004558 235004902 -7659451 - L1MC4a LINE L1 -1378 6435 6088 1220 135 1 1 chr1 235004967 235005134 -7659219 + THE1C LTR MaLR 1 167 -188 416 179 0 0 chr1 235005134 235005201 -7659152 + AluS SINE Alu 1 67 -236 840 118 21 118 chr1 235005307 235005432 -7658921 + HSMAR2 DNA Mariner 1133 1236 -66 2367 75 7 0 chr1 235005432 235005737 -7658616 - AluY SINE Alu -2 309 3 840 118 21 118 chr1 235005737 235005798 -7658555 + HSMAR2 DNA Mariner 1236 1301 -1 212 309 52 10 chr1 235005816 235005913 -7658440 - MIR SINE MIR -80 182 82 23 33 0 0 chr1 235006370 235006400 -7657953 + AT_rich Low_complexity Low_complexity 1 30 0 211 269 149 0 chr1 235006496 235006563 -7657790 + L2 LINE L2 3195 3271 -1 1767 253 14 22 chr1 235007250 235007885 -7656468 + L1MC4a LINE L1 4774 5405 -760 451 249 95 12 chr1 235007897 235008066 -7656287 - L1M4 LINE L1 -1162 4984 4802 448 288 35 39 chr1 235008083 235008671 -7655682 + L1MC4a LINE L1 5892 6465 -1343 318 349 0 0 chr1 235008690 235008796 -7655557 - L1MEc LINE L1 -6161 235 130 * 449 256 55 0 chr1 235008794 235008958 -7655395 + L1M4 LINE L1 3154 3326 -2820 229 116 72 14 chr1 235009035 235009104 -7655249 + (TA)n Simple_repeat Simple_repeat 1 73 0 289 363 105 24 chr1 235009639 235009972 -7654381 + L3 LINE CR1 754 1113 -464 478 99 5 89 chr1 235010005 235010196 -7654157 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 256 246 36 0 chr1 235010197 235010307 -7654046 + (TTA)n Simple_repeat Simple_repeat 3 116 0 400 128 7 50 chr1 235010312 235010453 -7653900 + (TATAA)n Simple_repeat Simple_repeat 3 137 0 760 52 0 73 chr1 235010464 235010656 -7653697 + (TATAA)n Simple_repeat Simple_repeat 3 180 0 811 60 18 65 chr1 235010677 235010983 -7653370 + (TATAA)n Simple_repeat Simple_repeat 1 291 0 2460 127 72 0 chr1 235011911 235012054 -7652299 + Tigger3(Golem) DNA MER2_type 2597 2728 -300 2473 30 0 20 chr1 235012054 235012359 -7651994 + L1PA7 LINE L1 5856 6154 0 2460 127 72 0 chr1 235012359 235012617 -7651736 + Tigger3(Golem) DNA MER2_type 2728 3027 -1 276 297 132 28 chr1 235013033 235013215 -7651138 + L2 LINE L2 2623 2823 -491 390 308 166 35 chr1 235013246 235013590 -7650763 + L2 LINE L2 2923 3311 -2 284 378 47 0 chr1 235013620 235013768 -7650585 - MIR SINE MIR 0 262 108 1957 110 10 17 chr1 235014001 235014300 -7650053 - AluSx SINE Alu -15 297 1 1935 207 54 8 chr1 235014959 235015394 -7648959 - MLT2B1 LTR ERVL 0 520 28 16418 162 30 42 chr1 235015394 235015740 -7648613 - ERVL-B1 LTR ERVL -5 5759 5410 978 31 0 62 chr1 235015740 235015932 -7648421 + (TA)n Simple_repeat Simple_repeat 1 180 0 16418 162 30 42 chr1 235015932 235018431 -7645922 - ERVL-B1 LTR ERVL -354 5410 2953 2213 100 3 13 chr1 235018431 235018741 -7645612 - AluSx SINE Alu -5 307 1 16418 162 30 42 chr1 235018741 235018943 -7645410 - ERVL-B1 LTR ERVL -2811 2953 2750 552 116 0 0 chr1 235018943 235019029 -7645324 + (TA)n Simple_repeat Simple_repeat 2 87 0 3745 168 9 3 chr1 235019031 235020260 -7644093 - L1P5 LINE L1 -371 5780 4543 339 262 66 0 chr1 235020899 235021021 -7643332 + MIR SINE MIR 129 258 -4 1475 181 105 10 chr1 235021380 235021694 -7642659 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr1 235022385 235022406 -7641947 + AT_rich Low_complexity Low_complexity 1 21 0 3638 153 2 10 chr1 235022673 235023283 -7641070 + HSMAR2 DNA Mariner 1 605 -697 6019 36 8 0 chr1 235023284 235024003 -7640350 - L1PA5 LINE L1 -3 6151 5427 1092 239 16 16 chr1 235024223 235024533 -7639820 - L1MA10 LINE L1 -14 6320 6011 248 320 0 10 chr1 235025090 235025187 -7639166 + MIR SINE MIR 167 262 0 236 39 0 118 chr1 235025622 235025673 -7638680 + (T)n Simple_repeat Simple_repeat 1 45 0 2055 32 0 0 chr1 235025677 235025926 -7638427 - L1HS LINE L1 0 6155 5907 * 5682 6 0 0 chr1 235025915 235026561 -7637792 + L1HS LINE L1 5254 5899 -256 182 351 113 33 chr1 235027869 235028020 -7636333 - L2 LINE L2 -8 3264 3102 1954 162 6 19 chr1 235028611 235028970 -7635383 + L1PA16 LINE L1 5804 6157 -9 1033 282 73 30 chr1 235029034 235029495 -7634858 + L1MCa LINE L1 1 449 -5596 975 284 69 36 chr1 235029827 235030669 -7633684 + L1MCa LINE L1 651 1533 -4848 4935 202 54 17 chr1 235030670 235032807 -7631546 + L1MB1 LINE L1 4026 6141 -27 285 331 89 18 chr1 235033082 235033251 -7631102 + LTR50 LTR ERVL 3 183 -612 441 271 150 0 chr1 235033411 235033658 -7630695 + LTR50 LTR ERVL 510 793 -2 964 300 84 16 chr1 235033694 235034147 -7630206 + L1MC/D LINE L1 5302 5785 -2023 1980 190 33 3 chr1 235034156 235034524 -7629829 + MER44D DNA MER2_type 1 434 -171 1562 111 49 0 chr1 235034524 235034768 -7629585 - Tigger2 DNA MER2_type 0 2718 2463 3359 160 66 46 chr1 235034823 235035124 -7629229 - Tigger2 DNA MER2_type -1959 759 466 3392 85 2 0 chr1 235035124 235035583 -7628770 - L1PA8 LINE L1 -10 6162 5703 3359 160 66 46 chr1 235035583 235036024 -7628329 - Tigger2 DNA MER2_type -2252 466 2 321 45 0 0 chr1 235036026 235036070 -7628283 + MER44D DNA MER2_type 434 477 -128 34 93 0 0 chr1 235036077 235036174 -7628179 + AT_rich Low_complexity Low_complexity 1 97 0 2000 123 10 27 chr1 235036345 235036646 -7627707 - AluSx SINE Alu -16 296 1 398 368 102 42 chr1 235036846 235037229 -7627124 + L2 LINE L2 2894 3299 -14 270 0 0 0 chr1 235037230 235037260 -7627093 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr1 235037411 235037433 -7626920 + AT_rich Low_complexity Low_complexity 1 22 0 1809 208 18 16 chr1 235037615 235037995 -7626358 + MSTD LTR MaLR 5 385 -11 363 78 0 0 chr1 235038092 235038143 -7626210 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr1 235038402 235038437 -7625916 + AT_rich Low_complexity Low_complexity 1 35 0 656 200 30 0 chr1 235038659 235038794 -7625559 + AluSg/x SINE Alu 163 301 -11 1377 118 18 23 chr1 235038794 235039014 -7625339 + THE1C LTR MaLR 157 375 0 2100 261 69 17 chr1 235039061 235040501 -7623852 - L1MD3 LINE L1 -747 5399 4476 580 299 62 20 chr1 235040898 235041239 -7623114 + L1M4 LINE L1 3621 3975 -2171 344 292 144 19 chr1 235041859 235042331 -7622022 + L1M4 LINE L1 4054 4584 -1562 2496 56 3 0 chr1 235043465 235043771 -7620582 - AluY SINE Alu -4 307 1 228 174 0 0 chr1 235044381 235044427 -7619926 + LTR66 LTR ERVL 394 439 -171 302 210 32 0 chr1 235044437 235044499 -7619854 + L1MC4 LINE L1 6652 6715 -1327 403 280 147 24 chr1 235045397 235045661 -7618692 + L1ME3A LINE L1 924 1220 -5176 321 346 88 0 chr1 235045721 235045926 -7618427 + MIR SINE MIR 40 262 0 459 0 0 0 chr1 235046290 235046341 -7618012 + (CA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr1 235046856 235046878 -7617475 + AT_rich Low_complexity Low_complexity 1 22 0 790 290 75 53 chr1 235046911 235047391 -7616962 + MLT1G LTR MaLR 10 500 -42 235 377 70 9 chr1 235047581 235047695 -7616658 + MIR SINE MIR 31 151 -111 1944 290 115 40 chr1 235048578 235051221 -7613132 + L1ME3A LINE L1 2745 5585 -821 2228 119 3 0 chr1 235051230 235051541 -7612812 + AluSx SINE Alu 1 312 0 1079 307 97 23 chr1 235051656 235052399 -7611954 + L1ME3A LINE L1 5633 6430 0 304 274 129 16 chr1 235052483 235052607 -7611746 - Charlie8 DNA MER1_type -2181 236 99 265 299 62 21 chr1 235054143 235054287 -7610066 + HAL1 LINE L1 1425 1574 -933 2245 65 27 3 chr1 235056576 235056869 -7607484 + AluY SINE Alu 1 300 -11 180 0 0 0 chr1 235056871 235056891 -7607462 + (TA)n Simple_repeat Simple_repeat 1 20 0 204 283 0 0 chr1 235056957 235057003 -7607350 + GA-rich Low_complexity Low_complexity 3 48 0 310 369 104 18 chr1 235057004 235057226 -7607127 + L1MEd LINE L1 143 383 -5736 1552 176 7 29 chr1 235057315 235057621 -7606732 - AluJo SINE Alu -13 299 1 1460 231 26 15 chr1 235057692 235058034 -7606319 - MER4D LTR ERV1 -7 896 551 1191 213 59 15 chr1 235058066 235058339 -7606014 - MER49 LTR ERV1 -638 285 1 278 243 37 19 chr1 235058494 235058601 -7605752 - L1ME LINE L1 -5901 169 61 2239 65 0 48 chr1 235058645 235058954 -7605399 - AluY SINE Alu -17 294 1 21 36 0 0 chr1 235059579 235059607 -7604746 + AT_rich Low_complexity Low_complexity 1 28 0 388 312 85 72 chr1 235060162 235060550 -7603803 - LTR67 LTR ERVL -163 394 2 1860 83 33 0 chr1 235061080 235061371 -7602982 + AluSc SINE Alu 30 328 0 250 398 18 9 chr1 235062690 235062803 -7601550 + MIR SINE MIR 33 146 -62 592 317 58 0 chr1 235063132 235063337 -7601016 + MLT1H LTR MaLR 14 230 -319 31 0 0 24 chr1 235063663 235063680 -7600673 + AT_rich Low_complexity Low_complexity 1 17 -24 1697 178 0 17 chr1 235063680 235063973 -7600380 + AluJb SINE Alu 1 288 -24 31 0 0 24 chr1 235063973 235063997 -7600356 + AT_rich Low_complexity Low_complexity 17 41 0 239 0 32 0 chr1 235064094 235064125 -7600228 + (TA)n Simple_repeat Simple_repeat 2 33 0 717 196 64 64 chr1 235064482 235064717 -7599636 - L1M4c LINE L1 -4508 2138 1904 * 1883 235 79 24 chr1 235064713 235065368 -7598985 - L1M4c LINE L1 -4978 1564 870 2833 178 60 3 chr1 235065368 235065969 -7598384 + LTR24C LTR ERV1 1 635 0 1883 235 79 24 chr1 235065969 235065986 -7598367 - L1M4c LINE L1 -5672 870 855 207 0 0 0 chr1 235065989 235066012 -7598341 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1942 124 0 4 chr1 235066016 235066290 -7598063 - AluSg SINE Alu -37 273 1 319 286 146 17 chr1 235066405 235066583 -7597770 - L1M4c LINE L1 -5731 811 611 21 36 0 0 chr1 235066664 235066692 -7597661 + AT_rich Low_complexity Low_complexity 1 28 0 249 253 0 0 chr1 235066796 235066883 -7597470 + (TA)n Simple_repeat Simple_repeat 2 88 0 300 291 25 0 chr1 235067343 235067422 -7596931 - L1M4c LINE L1 -6275 267 187 2483 51 0 0 chr1 235067516 235067811 -7596542 + AluY SINE Alu 3 297 -14 21 36 0 0 chr1 235067952 235067980 -7596373 + AT_rich Low_complexity Low_complexity 1 28 0 229 102 0 82 chr1 235068082 235068131 -7596222 - LTR66 LTR ERVL -168 442 398 192 125 0 0 chr1 235068139 235068171 -7596182 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr1 235068370 235068404 -7595949 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr1 235068821 235068844 -7595509 + (T)n Simple_repeat Simple_repeat 1 23 0 2118 174 23 9 chr1 235068929 235069365 -7594988 - L1 LINE L1 -1735 4411 3970 3325 179 26 13 chr1 235069365 235069540 -7594813 + L1MA5 LINE L1 5614 5785 -515 501 125 0 0 chr1 235069540 235069620 -7594733 - MADE1 DNA Mariner 0 80 1 3325 179 26 13 chr1 235069620 235070120 -7594233 + L1MA5 LINE L1 5785 6300 0 694 380 76 23 chr1 235071001 235071474 -7592879 - L3 LINE CR1 -34 1543 1046 1693 162 19 91 chr1 235071949 235072369 -7591984 + MLT1B LTR MaLR 1 390 0 631 312 5 11 chr1 235072504 235072693 -7591660 - ERVL LTR ERVL -1462 4302 4115 273 252 46 76 chr1 235072701 235072832 -7591521 + MLT1J2 LTR MaLR 57 183 -267 454 357 47 12 chr1 235072837 235073229 -7591124 - ERVL LTR ERVL -1669 3985 3588 2323 158 22 31 chr1 235073304 235073753 -7590600 - MER65A LTR ERV1 0 445 1 793 344 59 47 chr1 235073883 235074523 -7589830 - ERVL LTR ERVL -2734 3030 2383 377 80 0 0 chr1 235074676 235074726 -7589627 - 5S rRNA rRNA -71 50 1 350 335 11 44 chr1 235075735 235075917 -7588436 - LTR16A LTR ERVL -219 231 56 323 347 54 6 chr1 235075995 235076162 -7588191 - L1ME3A LINE L1 -219 5951 5777 190 302 167 0 chr1 235076744 235076840 -7587513 - L3 LINE CR1 -898 679 568 23 54 0 0 chr1 235077965 235078002 -7586351 + AT_rich Low_complexity Low_complexity 1 37 0 8905 201 46 55 chr1 235078600 235078707 -7585646 + L1PA13 LINE L1 1826 1932 -4865 2088 67 7 14 chr1 235078707 235078990 -7585363 + AluY SINE Alu 1 281 -30 207 0 0 0 chr1 235078998 235079021 -7585332 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8905 201 46 55 chr1 235079021 235079942 -7584411 + L1PA13 LINE L1 1939 2867 -3930 380 149 122 14 chr1 235079942 235080016 -7584337 + AluSc SINE Alu 1 82 -217 8905 201 46 55 chr1 235080016 235081420 -7582933 + L1PA13 LINE L1 2867 4336 -2461 207 0 0 0 chr1 235081420 235081443 -7582910 + (CA)n Simple_repeat Simple_repeat 2 24 0 8905 201 46 55 chr1 235081443 235081705 -7582648 + L1PA13 LINE L1 4336 4599 -2198 6541 123 155 82 chr1 235081705 235083284 -7581069 - pTR5 LTR ERV1 -1 2437 743 5066 199 13 12 chr1 235083285 235084370 -7579983 + L1PA13 LINE L1 4593 5678 -1119 335 354 29 45 chr1 235284387 235284701 -7379652 + L3 LINE CR1 1004 1312 -265 2490 43 13 0 chr1 235285437 235285741 -7378612 - AluY SINE Alu -3 308 1 214 304 63 0 chr1 235286779 235286858 -7377495 - MIR SINE MIR -20 242 159 3606 177 12 5 chr1 235286861 235287504 -7376849 - Tigger1 DNA MER2_type -1 2417 1770 231 329 12 0 chr1 235287507 235287589 -7376764 + C-rich Low_complexity Low_complexity 1 83 0 214 146 12 61 chr1 235287602 235287684 -7376669 + C-rich Low_complexity Low_complexity 5 82 0 11555 140 39 17 chr1 235287793 235289691 -7374662 - Tigger1 DNA MER2_type -478 1940 2 365 319 51 7 chr1 235289692 235289830 -7374523 - MIR SINE MIR -105 157 14 259 287 24 75 chr1 235289878 235289924 -7374429 - MIR SINE MIR -60 202 155 2810 117 60 2 chr1 235289924 235290327 -7374026 - MSTB LTR MaLR 0 426 1 259 287 24 75 chr1 235290327 235290480 -7373873 - MIR SINE MIR -107 155 16 1307 270 45 14 chr1 235291323 235291768 -7372585 - Charlie1b DNA MER1_type -13 510 52 379 272 31 46 chr1 235291845 235292040 -7372313 - L1M4 LINE L1 -2258 3888 3697 373 323 43 24 chr1 235292423 235292587 -7371766 + MIR SINE MIR 90 256 -6 1555 242 137 27 chr1 235292725 235293213 -7371140 - MLT1F LTR MaLR 0 542 1 260 352 9 9 chr1 235293648 235293753 -7370600 + L2 LINE L2 3168 3272 0 492 256 42 21 chr1 235295622 235295766 -7368587 + L1MC4 LINE L1 7883 7994 -1 1910 175 0 0 chr1 235296251 235296548 -7367805 + AluJo SINE Alu 1 297 -15 2104 111 35 0 chr1 235297621 235297909 -7366444 - AluSx SINE Alu -12 300 3 343 291 115 26 chr1 235297948 235298453 -7365900 + L1M4 LINE L1 2740 3289 -2857 243 250 0 0 chr1 235298462 235298514 -7365839 + CT-rich Low_complexity Low_complexity 3 54 0 2280 85 0 31 chr1 235298876 235299194 -7365159 + AluSc SINE Alu 1 308 -1 412 183 49 0 chr1 235299503 235299585 -7364768 + L1MC4 LINE L1 6458 6543 -1499 1767 163 25 0 chr1 235299585 235299867 -7364486 + AluSg SINE Alu 1 289 -21 292 136 15 15 chr1 235299869 235299935 -7364418 + GA-rich Low_complexity Low_complexity 3 68 0 1630 135 0 0 chr1 235300154 235300384 -7363969 - AluSx SINE Alu -30 282 53 30 0 0 0 chr1 235301129 235301159 -7363194 + AT_rich Low_complexity Low_complexity 1 30 0 1750 122 8 4 chr1 235301380 235301634 -7362719 + AluSc SINE Alu 1 255 -54 1120 132 6 0 chr1 235303079 235303253 -7361100 + AluSg/x SINE Alu 135 309 -1 2301 99 3 0 chr1 235303456 235303760 -7360593 - AluSx SINE Alu -7 305 1 4916 138 68 17 chr1 235304340 235305405 -7358948 + pTR5 LTR ERV1 743 2025 -413 325 247 32 0 chr1 235305405 235305498 -7358855 + LTR30 LTR ERV1 544 639 -83 1485 104 5 5 chr1 235305505 235305726 -7358627 + pTR5 LTR ERV1 172 392 -2046 396 22 0 0 chr1 235305811 235305856 -7358497 + LTR7 LTR ERV1 406 450 0 1729 146 29 4 chr1 235306414 235306694 -7357659 + AluSx SINE Alu 1 287 -25 283 78 65 26 chr1 235306717 235306794 -7357559 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 234 0 0 0 chr1 235307096 235307122 -7357231 + (CA)n Simple_repeat Simple_repeat 2 27 0 1602 188 0 3 chr1 235307122 235307419 -7356934 - AluJb SINE Alu -14 298 1 336 256 305 6 chr1 235308493 235308657 -7355696 - MIR SINE MIR -25 237 25 2046 142 0 0 chr1 235308904 235309206 -7355147 + AluSx SINE Alu 1 302 -10 289 197 45 15 chr1 235309564 235309630 -7354723 + LTR67 LTR ERVL 487 554 -3 1596 107 152 0 chr1 235309684 235309949 -7354404 + AluSg SINE Alu 1 302 0 202 210 0 188 chr1 235310644 235310782 -7353571 - MIR SINE MIR -51 211 100 416 289 11 14 chr1 235310865 235310997 -7353356 - MIR SINE MIR -54 154 30 540 260 159 26 chr1 235311086 235311313 -7353040 + HsTC2a DNA Tc2 38 294 -450 897 163 0 0 chr1 235311318 235311453 -7352900 + FLAM_C SINE Alu 1 135 -8 2073 133 3 0 chr1 235311456 235311758 -7352595 + AluSx SINE Alu 1 303 -9 35 24 0 0 chr1 235311761 235311803 -7352550 + AT_rich Low_complexity Low_complexity 1 42 0 822 176 0 0 chr1 235311805 235311936 -7352417 + AluJb SINE Alu 148 278 -34 1313 209 80 45 chr1 235311952 235312392 -7351961 + HsTC2a DNA Tc2 290 744 0 1040 175 0 0 chr1 235313649 235313826 -7350527 + AluJb SINE Alu 136 312 0 510 31 0 46 chr1 235313925 235313990 -7350363 - AluSc SINE Alu -15 294 233 2147 106 10 0 chr1 235314637 235314930 -7349423 + AluSp SINE Alu 1 296 -17 2375 54 10 0 chr1 235315329 235315625 -7348728 + AluY SINE Alu 1 299 -12 2331 107 0 3 chr1 235316036 235316345 -7348008 - AluSg SINE Alu -2 308 1 1722 173 27 7 chr1 235317130 235317425 -7346928 + AluJo SINE Alu 1 301 -11 224 374 0 0 chr1 235317446 235317537 -7346816 + MIR SINE MIR 64 154 -108 1598 121 155 8 chr1 235317686 235317951 -7346402 - AluSx SINE Alu -8 304 1 1794 148 48 7 chr1 235318287 235318577 -7345776 - AluJo SINE Alu 0 312 11 774 143 0 0 chr1 235318750 235318869 -7345484 - L1MA4 LINE L1 -5 6295 6177 1976 86 10 55 chr1 235319110 235319401 -7344952 + AluSq SINE Alu 23 300 -13 989 193 37 70 chr1 235319802 235320072 -7344281 + MLT2B1 LTR ERVL 6 266 -254 2610 186 50 4 chr1 235320751 235321271 -7343082 - L1MC2 LINE L1 -14 6330 5787 763 71 10 0 chr1 235321271 235321370 -7342983 + THE1C LTR MaLR 9 108 -267 198 339 15 0 chr1 235321561 235321626 -7342727 - L2 LINE L2 -2 3270 3205 281 282 0 28 chr1 235321645 235321716 -7342637 + MIR SINE MIR 16 84 -178 1749 208 25 12 chr1 235321745 235322148 -7342205 - L1MC2 LINE L1 -915 5231 4824 712 187 75 19 chr1 235322145 235322359 -7341994 - L1MC2 LINE L1 -1610 4536 4311 * 243 185 19 0 chr1 235322356 235322410 -7341943 - L1MB7 LINE L1 -11 6173 6119 * 408 143 33 66 chr1 235322409 235322500 -7341853 + L1M4 LINE L1 61 148 -6394 642 183 22 0 chr1 235322765 235322902 -7341451 + L1M4 LINE L1 5462 5601 -1043 2068 127 27 0 chr1 235323139 235323431 -7340922 - AluSx SINE Alu -12 300 1 2414 62 0 37 chr1 235323451 235323773 -7340580 - AluY SINE Alu -1 310 1 2318 49 0 11 chr1 235325489 235325800 -7338553 + AluY SINE Alu 1 308 0 496 308 102 42 chr1 235326050 235326630 -7337723 - L1ME3A LINE L1 -290 5863 5247 1873 124 7 7 chr1 235326634 235326907 -7337446 - AluSx SINE Alu -20 292 20 5772 151 41 20 chr1 235327391 235327987 -7336366 + L1MA8 LINE L1 4133 4715 -1576 2479 81 0 0 chr1 235327987 235328295 -7336058 + AluSc SINE Alu 1 308 -1 5772 151 41 20 chr1 235328295 235329475 -7334878 + L1MA8 LINE L1 4715 5949 -342 2463 84 0 0 chr1 235329593 235329890 -7334463 + AluSg SINE Alu 1 297 -13 1559 149 67 47 chr1 235329890 235330209 -7334144 + L1MA8 LINE L1 5942 6270 -21 2072 131 0 7 chr1 235330209 235330507 -7333846 - AluSx SINE Alu -16 296 1 1559 149 67 47 chr1 235330507 235330530 -7333823 + L1MA8 LINE L1 6270 6291 0 406 275 115 66 chr1 235330713 235331224 -7333129 - L1ME3A LINE L1 -1386 4743 4207 271 274 29 10 chr1 235331250 235331352 -7333001 - L1ME3A LINE L1 -5957 162 59 1912 229 56 4 chr1 235331559 235332043 -7332310 - L1MC4 LINE L1 -144 7898 7390 2270 232 31 31 chr1 235332061 235332569 -7331784 + MLT2B3 LTR ERVL 1 508 -46 236 130 65 0 chr1 235332586 235332632 -7331721 - MLT2B2 LTR ERVL -11 504 456 1035 219 275 47 chr1 235332698 235332784 -7331569 - L1MC4 LINE L1 -531 7277 7212 2185 137 33 16 chr1 235332784 235333150 -7331203 + THE1C LTR MaLR 1 372 -3 1035 219 275 47 chr1 235333150 235333251 -7331102 - L1MC4 LINE L1 -596 7212 7135 2157 107 3 0 chr1 235333251 235333541 -7330812 - AluSq SINE Alu -22 291 1 1035 219 275 47 chr1 235333541 235333908 -7330445 - L1MC4 LINE L1 -673 7135 6595 857 139 0 16 chr1 235334312 235334441 -7329912 - FLAM_C SINE Alu -16 127 1 1611 183 156 5 chr1 235335324 235335696 -7328657 - MSTC LTR MaLR 0 428 1 898 276 100 28 chr1 235341676 235342043 -7322310 + MER34 LTR ERV1 20 490 -95 2320 96 0 0 chr1 235342043 235342335 -7322018 - AluSq SINE Alu -20 293 2 898 276 100 28 chr1 235342335 235342439 -7321914 + MER34 LTR ERV1 490 585 0 489 268 105 37 chr1 235342439 235342629 -7321724 + MIR SINE MIR 58 260 -2 1159 164 164 13 chr1 235342636 235342935 -7321418 - MER2 DNA MER2_type 0 344 1 198 167 0 0 chr1 235343720 235343756 -7320597 + GA-rich Low_complexity Low_complexity 1 36 0 2238 80 45 0 chr1 235344876 235345163 -7319190 + AluSq SINE Alu 1 300 -13 1487 209 40 0 chr1 235345424 235345720 -7318633 - MLT1A1 LTR MaLR 0 365 58 263 139 0 0 chr1 235345720 235345763 -7318590 - MLT1A1 LTR MaLR -259 106 64 302 164 0 0 chr1 235345763 235345818 -7318535 - MLT1A1 LTR MaLR -253 112 58 302 164 0 0 chr1 235345812 235345867 -7318486 - MLT1A1 LTR MaLR -253 112 58 * 305 164 0 0 chr1 235345861 235345916 -7318437 - MLT1A1 LTR MaLR -253 112 58 302 164 0 0 chr1 235345910 235345965 -7318388 - MLT1A1 LTR MaLR -253 112 58 * 305 164 0 0 chr1 235345959 235346014 -7318339 - MLT1A1 LTR MaLR -253 112 58 305 164 0 0 chr1 235346008 235346063 -7318290 - MLT1A1 LTR MaLR -253 112 58 * 520 195 0 51 chr1 235346057 235346175 -7318178 - MLT1A1 LTR MaLR -253 112 1 2315 96 0 3 chr1 235346393 235346696 -7317657 - AluSc SINE Alu -7 302 1 640 154 52 15 chr1 235346828 235346964 -7317389 + MLT1A1 LTR MaLR 1 141 -224 342 0 0 0 chr1 235346964 235347002 -7317351 + (TG)n Simple_repeat Simple_repeat 1 38 0 513 90 0 0 chr1 235347004 235347071 -7317282 - AluSx SINE Alu -37 275 209 1399 130 10 0 chr1 235347112 235347319 -7317034 - AluSx SINE Alu -103 209 1 1276 172 0 25 chr1 235347319 235347557 -7316796 + MLT1A1 LTR MaLR 132 363 -2 456 220 85 0 chr1 235347563 235347708 -7316645 + MIR SINE MIR 104 260 -2 2240 100 23 0 chr1 235348029 235348330 -7316023 + AluSx SINE Alu 1 308 -4 2417 80 0 3 chr1 235348498 235348797 -7315556 + AluSc SINE Alu 1 298 -11 2175 103 3 3 chr1 235349188 235349489 -7314864 + AluSx SINE Alu 1 301 -11 2353 98 0 0 chr1 235349597 235349892 -7314461 + AluSx SINE Alu 1 295 -17 1888 166 3 10 chr1 235350290 235350586 -7313767 - AluJb SINE Alu -18 294 1 1995 147 6 13 chr1 235351478 235351792 -7312561 + AluSx SINE Alu 1 312 0 2086 105 0 37 chr1 235352033 235352360 -7311993 + AluSq SINE Alu 1 316 0 2271 77 0 20 chr1 235352498 235352796 -7311557 + AluY SINE Alu 1 292 -19 21 36 0 0 chr1 235352797 235352825 -7311528 + AT_rich Low_complexity Low_complexity 1 28 0 309 202 61 18 chr1 235354564 235354678 -7309675 - MER112 DNA MER1_type -35 225 107 260 256 0 44 chr1 235354688 235354778 -7309575 + (CATA)n Simple_repeat Simple_repeat 3 88 0 368 115 0 0 chr1 235354795 235354847 -7309506 + MER66B LTR ERV1 295 346 -140 24 0 0 0 chr1 235354848 235354872 -7309481 + AT_rich Low_complexity Low_complexity 1 24 0 355 326 29 11 chr1 235355070 235355245 -7309108 - L1ME LINE L1 -462 5659 5482 255 383 78 31 chr1 235355677 235356231 -7308122 + L3 LINE CR1 614 1193 -384 737 255 21 27 chr1 235356589 235356777 -7307576 + MER5A DNA MER1_type 1 187 -2 1183 111 0 0 chr1 235356995 235357148 -7307205 + AluSx SINE Alu 1 153 -159 7222 91 5 18 chr1 235357150 235358221 -7306132 + MER11C LTR ERVK 1 1057 -14 962 180 0 0 chr1 235358236 235358432 -7305921 + AluSx SINE Alu 148 312 0 697 154 7 59 chr1 235358464 235358600 -7305753 - FLAM_C SINE Alu -4 129 1 695 287 117 62 chr1 235358628 235358969 -7305384 + L3 LINE CR1 1218 1577 0 281 293 122 16 chr1 235360919 235361042 -7303311 + L2 LINE L2 3167 3302 -11 234 0 0 0 chr1 235361726 235361752 -7302601 + (TA)n Simple_repeat Simple_repeat 2 27 0 2357 77 0 10 chr1 235361752 235362051 -7302302 - AluY SINE Alu -15 296 1 2376 85 3 7 chr1 235363040 235363347 -7301006 + AluSp SINE Alu 1 306 -7 424 299 56 25 chr1 235363769 235363966 -7300387 + L1ME4a LINE L1 5721 5923 -198 200 330 10 78 chr1 235364030 235364069 -7300284 - MIR SINE MIR -123 139 99 718 182 0 8 chr1 235364069 235364226 -7300127 - FLAM_C SINE Alu 0 133 1 200 330 10 78 chr1 235364226 235364289 -7300064 - MIR SINE MIR -163 99 44 1944 135 4 4 chr1 235364543 235364848 -7299505 + AluSx SINE Alu 1 305 0 2235 118 0 0 chr1 235365494 235365790 -7298563 - AluSq SINE Alu -16 297 2 682 188 176 0 chr1 235366472 235366642 -7297711 + MER3 DNA MER1_type 7 206 -3 341 281 219 0 chr1 235368670 235368816 -7295537 + MIR SINE MIR 67 244 -18 650 223 181 0 chr1 235368827 235368993 -7295360 - MIR SINE MIR -30 232 37 181 286 95 12 chr1 235369126 235369210 -7295143 - L3b LINE CR1 -70 1513 1423 1608 155 36 32 chr1 235369655 235369960 -7294393 + AluJo SINE Alu 5 310 0 241 232 27 143 chr1 235370382 235370584 -7293769 + MIR SINE MIR 8 193 -62 197 178 22 0 chr1 235370759 235370804 -7293549 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 349 407 20 16 chr1 235370937 235371190 -7293163 + L2 LINE L2 2937 3190 -82 2012 134 7 13 chr1 235371351 235371657 -7292696 - AluSx SINE Alu -8 304 1 526 229 144 47 chr1 235373127 235373335 -7291018 - MIR SINE MIR 0 262 27 2252 117 0 0 chr1 235373335 235373642 -7290711 - AluSq SINE Alu -5 308 2 526 229 144 47 chr1 235373642 235373669 -7290684 - MIR SINE MIR -235 27 4 230 386 23 45 chr1 235373687 235373819 -7290534 + MIR3 SINE MIR 14 142 -66 23 33 0 0 chr1 235375067 235375097 -7289256 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 235376560 235376581 -7287772 + AT_rich Low_complexity Low_complexity 1 21 0 2384 103 0 0 chr1 235377745 235378046 -7286307 - AluSx SINE Alu -11 301 1 228 111 0 0 chr1 235378346 235378382 -7285971 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 424 355 29 22 chr1 235378382 235378520 -7285833 - L2 LINE L2 -17 3255 3117 2290 178 60 0 chr1 235378728 235379210 -7285143 + L1MA6 LINE L1 5784 6294 -6 23 33 0 0 chr1 235379350 235379380 -7284973 + AT_rich Low_complexity Low_complexity 1 30 0 2085 140 3 0 chr1 235379602 235379902 -7284451 + AluSc SINE Alu 1 301 -8 2176 157 6 6 chr1 235380630 235380993 -7283360 + MLT1A1 LTR MaLR 1 363 -2 2124 115 3 7 chr1 235381314 235381609 -7282744 + AluSx SINE Alu 1 294 -18 1336 156 8 4 chr1 235382122 235382365 -7281988 + MLT2D LTR ERVL 1 244 -170 27 49 0 0 chr1 235382878 235382919 -7281434 + AT_rich Low_complexity Low_complexity 1 41 0 570 168 30 132 chr1 235383865 235384062 -7280291 + MLT2D LTR ERVL 238 414 0 1094 214 44 98 chr1 235384868 235385275 -7279078 + MLT1B LTR MaLR 1 385 -5 202 356 40 0 chr1 235385366 235385467 -7278886 + L2 LINE L2 3209 3313 0 2475 88 0 3 chr1 235387769 235388077 -7276276 + AluSq SINE Alu 1 307 -6 228 217 0 22 chr1 235388472 235388548 -7275805 + G-rich Low_complexity Low_complexity 1 74 0 2079 102 7 3 chr1 235388695 235389002 -7275351 + AluSq SINE Alu 1 308 0 287 283 20 20 chr1 235389571 235389670 -7274683 - MER5B DNA MER1_type -79 99 1 753 219 7 7 chr1 235389840 235389986 -7274367 + FRAM SINE Alu 1 146 -30 2356 101 0 3 chr1 235391819 235392125 -7272228 - AluSq SINE Alu -8 305 1 2863 151 14 54 chr1 235393068 235393638 -7270715 - MER44D DNA MER2_type -3 602 1 254 204 0 0 chr1 235393643 235393692 -7270661 + Tigger5 DNA MER2_type 2 50 -2273 548 149 0 0 chr1 235393707 235393794 -7270559 + Tigger5 DNA MER2_type 2237 2323 0 1585 172 0 22 chr1 235394008 235394275 -7270078 - AluJo SINE Alu -51 261 1 2431 63 0 3 chr1 235394696 235394999 -7269354 - AluY SINE Alu -9 302 1 404 250 31 0 chr1 235395000 235395096 -7269257 - L2 LINE L2 -531 2783 2685 360 0 0 0 chr1 235395105 235395145 -7269208 + (CA)n Simple_repeat Simple_repeat 1 40 0 5673 147 43 22 chr1 235395145 235396455 -7267898 + L1MC1 LINE L1 4987 6332 -1 731 243 130 51 chr1 235396494 235396770 -7267583 - L2 LINE L2 -637 2677 2380 1961 190 6 3 chr1 235398240 235398603 -7265750 - MLT1A1 LTR MaLR 0 365 2 2115 105 16 13 chr1 235398946 235399250 -7265103 - AluY SINE Alu -6 305 1 1108 304 30 61 chr1 235399978 235400455 -7263898 + L2 LINE L2 2339 3008 -305 2214 106 3 7 chr1 235400455 235400758 -7263595 - AluSg SINE Alu -8 302 1 1108 304 30 61 chr1 235400758 235401055 -7263298 + L2 LINE L2 3008 3313 0 210 118 0 0 chr1 235401120 235401154 -7263199 + (TG)n Simple_repeat Simple_repeat 1 34 0 358 292 33 17 chr1 235401849 235401969 -7262384 - L3 LINE CR1 -6 1571 1450 188 323 110 32 chr1 235402124 235402279 -7262074 + MIR SINE MIR 90 256 -6 2346 85 24 0 chr1 235402385 235402678 -7261675 - AluSx SINE Alu -12 300 1 338 117 33 0 chr1 235402922 235402982 -7261371 + CT-rich Low_complexity Low_complexity 3 64 0 2338 98 3 9 chr1 235403067 235403382 -7260971 + AluSq SINE Alu 1 313 0 1693 150 81 3 chr1 235403508 235403941 -7260412 - L1MC/D LINE L1 -743 5403 5127 3495 262 26 31 chr1 235403952 235404376 -7259977 - L1MC/D LINE L1 -2253 3893 3468 832 131 0 23 chr1 235404376 235404506 -7259847 - FLAM_C SINE Alu -6 127 1 3495 262 26 31 chr1 235404506 235405757 -7258596 - L1MC/D LINE L1 -2678 3468 2300 220 337 82 44 chr1 235405923 235406217 -7258136 + L2 LINE L2 2150 2454 -860 276 374 73 31 chr1 235406742 235407164 -7257189 - L3 LINE CR1 -173 1404 965 318 26 0 0 chr1 235408132 235408171 -7256182 + (TG)n Simple_repeat Simple_repeat 2 40 0 1177 166 47 5 chr1 235408172 235408365 -7255988 - AluJo SINE Alu -25 287 87 24 32 0 0 chr1 235408365 235408396 -7255957 + AT_rich Low_complexity Low_complexity 1 31 0 2255 116 0 3 chr1 235408396 235408707 -7255646 + AluSx SINE Alu 1 310 -2 251 313 72 0 chr1 235409342 235409425 -7254928 + L2 LINE L2 3148 3236 -36 304 333 130 11 chr1 235410277 235410454 -7253899 - MIR SINE MIR -56 206 9 2518 57 0 0 chr1 235411434 235411732 -7252621 + AluY SINE Alu 1 298 -13 23 54 0 0 chr1 235412553 235412590 -7251763 + AT_rich Low_complexity Low_complexity 1 37 0 1713 188 13 3 chr1 235412923 235413232 -7251121 + AluSx SINE Alu 1 312 0 794 142 30 0 chr1 235413244 235413413 -7250940 + GA-rich Low_complexity Low_complexity 2 175 0 2303 111 0 0 chr1 235414862 235415159 -7249194 + AluSq SINE Alu 1 297 -16 1611 154 3 45 chr1 235415548 235415840 -7248513 - AluJo SINE Alu -20 292 13 21 0 0 0 chr1 235415845 235415866 -7248487 + AT_rich Low_complexity Low_complexity 1 21 0 224 151 38 38 chr1 235417346 235417399 -7246954 + L2 LINE L2 3261 3313 0 1020 168 0 22 chr1 235417514 235417693 -7246660 + FRAM SINE Alu 1 174 -2 2085 132 0 7 chr1 235418001 235418311 -7246042 + AluSg SINE Alu 1 308 -2 1081 238 9 0 chr1 235419201 235419432 -7244921 + MLT1A1 LTR MaLR 85 317 -48 26 30 0 0 chr1 235419770 235419803 -7244550 + AT_rich Low_complexity Low_complexity 1 33 0 4802 157 27 22 chr1 235419803 235419963 -7244390 - L1MA8 LINE L1 -6 6285 6127 2288 115 0 3 chr1 235419963 235420277 -7244076 + AluSq SINE Alu 1 313 0 4802 157 27 22 chr1 235420277 235421109 -7243244 - L1MA8 LINE L1 -164 6127 5288 1936 141 7 14 chr1 235421884 235422175 -7242178 + AluSx SINE Alu 1 289 -23 260 202 10 30 chr1 235422455 235422554 -7241799 + (TA)n Simple_repeat Simple_repeat 2 98 0 288 281 72 58 chr1 235422784 235423062 -7241291 - L1ME LINE L1 -282 5839 5558 389 190 53 115 chr1 235423100 235423326 -7241027 + L2 LINE L2 2665 2876 -438 475 252 17 0 chr1 235423512 235423631 -7240722 + L2 LINE L2 3188 3308 -5 288 130 0 0 chr1 235423664 235423710 -7240643 + (T)n Simple_repeat Simple_repeat 1 46 0 362 269 77 87 chr1 235423935 235424188 -7240165 - L1ME3 LINE L1 -205 5916 5678 1728 179 7 3 chr1 235425248 235425545 -7238808 - AluJo SINE Alu -14 298 1 2876 50 0 3 chr1 235426354 235426715 -7237638 + L1PA6 LINE L1 5793 6152 -2 21 0 0 0 chr1 235426856 235426877 -7237476 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr1 235426943 235426981 -7237372 + AT_rich Low_complexity Low_complexity 1 38 0 1999 129 10 10 chr1 235427124 235427419 -7236934 - AluSx SINE Alu -17 295 1 225 299 95 29 chr1 235427623 235427760 -7236593 - MIR SINE MIR -57 205 60 2136 34 0 0 chr1 235428118 235428386 -7235967 - L1PA4 LINE L1 -173 5982 5715 1385 36 0 0 chr1 235428386 235428546 -7235807 + L1PA4 LINE L1 5986 6153 -2 2723 220 22 16 chr1 235428707 235429000 -7235353 - MER82 DNA MER2_type -5 648 358 2535 78 0 3 chr1 235429000 235429309 -7235044 + AluSq SINE Alu 3 310 -3 2723 220 22 16 chr1 235429309 235429655 -7234698 - MER82 DNA MER2_type -295 358 5 6043 99 11 3 chr1 235429709 235431113 -7233240 + L1PA14 LINE L1 4739 6152 -9 237 318 80 69 chr1 235432090 235432257 -7232096 + MIR SINE MIR 9 185 -63 2372 59 0 0 chr1 235432431 235432717 -7231636 - AluY SINE Alu -10 301 16 28 61 0 0 chr1 235432904 235432953 -7231400 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr1 235433004 235433036 -7231317 + AT_rich Low_complexity Low_complexity 1 32 0 275 263 246 0 chr1 235433200 235433314 -7231039 - L2 LINE L2 -4 3309 3168 500 313 74 16 chr1 235433797 235434040 -7230313 - MIR SINE MIR 0 262 6 2260 93 0 3 chr1 235434158 235434460 -7229893 - AluSx SINE Alu -10 302 2 2309 96 0 0 chr1 235435363 235435655 -7228698 - AluSc SINE Alu -17 292 1 272 261 0 45 chr1 235435676 235435810 -7228543 + (TAA)n Simple_repeat Simple_repeat 3 130 0 788 241 51 14 chr1 235435810 235436026 -7228327 - MIR SINE MIR 0 262 39 236 108 0 0 chr1 235436116 235436153 -7228200 - MADE1 DNA Mariner -43 37 1 201 295 82 77 chr1 235436270 235436453 -7227900 + MIR SINE MIR 29 212 -50 22 0 0 0 chr1 235436757 235436779 -7227574 + AT_rich Low_complexity Low_complexity 1 22 0 254 315 87 20 chr1 235436784 235436933 -7227420 - L2 LINE L2 0 3313 3155 2030 163 70 0 chr1 235437737 235438106 -7226247 + MER57A LTR ERV1 8 402 -1 314 359 53 23 chr1 235438199 235438330 -7226023 - L2 LINE L2 0 3272 3138 481 271 79 22 chr1 235439508 235439737 -7224616 - L1MEd LINE L1 -4877 1242 1001 24 85 0 0 chr1 235439888 235439947 -7224406 + AT_rich Low_complexity Low_complexity 1 59 0 2019 139 74 17 chr1 235440112 235440464 -7223889 + MSTA LTR MaLR 1 372 -56 207 0 0 0 chr1 235440469 235440492 -7223861 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 40791 67 5 2 chr1 235440492 235446603 -7217750 - L1PA5 LINE L1 0 6154 31 384 196 82 10 chr1 235446603 235446700 -7217653 + MSTA LTR MaLR 323 426 0 23 54 0 0 chr1 235447561 235447598 -7216755 + AT_rich Low_complexity Low_complexity 1 37 0 260 179 0 71 chr1 235447798 235447854 -7216499 - AluJb SINE Alu -176 126 75 320 301 30 0 chr1 235447938 235448071 -7216282 + L1ME4a LINE L1 5767 5903 -218 1061 175 14 28 chr1 235448424 235448635 -7215718 + MER3 DNA MER1_type 1 208 -1 38 61 0 0 chr1 235448682 235448748 -7215605 + AT_rich Low_complexity Low_complexity 1 66 0 2536 143 26 0 chr1 235448832 235449253 -7215100 + MSTB1 LTR MaLR 1 432 0 28 48 0 0 chr1 235449404 235449446 -7214907 + AT_rich Low_complexity Low_complexity 1 42 0 376 313 26 9 chr1 235450705 235450820 -7213533 - MIR SINE MIR -126 136 20 204 230 27 54 chr1 235451039 235451113 -7213240 + L2 LINE L2 3235 3306 -7 291 329 43 21 chr1 235452215 235452355 -7211998 + MIR3 SINE MIR 57 199 -9 265 130 43 87 chr1 235452561 235452676 -7211677 + A-rich Low_complexity Low_complexity 3 112 0 23 0 0 0 chr1 235453164 235453187 -7211166 + AT_rich Low_complexity Low_complexity 1 23 0 2025 68 4 0 chr1 235453294 235453558 -7210795 + L1PA6 LINE L1 5882 6146 -8 22 35 0 0 chr1 235453558 235453587 -7210766 + AT_rich Low_complexity Low_complexity 1 29 0 2677 121 16 14 chr1 235455500 235455932 -7208421 + L1MA5A LINE L1 5852 6287 -10 1736 130 54 7 chr1 235455932 235456208 -7208145 - AluSg SINE Alu -21 289 1 2677 121 16 14 chr1 235456208 235456220 -7208133 + L1MA5A LINE L1 6287 6297 0 419 347 40 22 chr1 235456578 235456803 -7207550 + L2 LINE L2 2071 2299 -1015 247 337 90 34 chr1 235456928 235457065 -7207288 + MIR SINE MIR 20 171 -91 2364 76 0 32 chr1 235457065 235457381 -7206972 + AluY SINE Alu 1 306 -5 247 337 90 34 chr1 235457381 235457421 -7206932 + MIR SINE MIR 171 207 -55 226 338 178 19 chr1 235457576 235457733 -7206620 - MER5A DNA MER1_type -1 188 7 35 0 0 0 chr1 235457930 235457965 -7206388 + AT_rich Low_complexity Low_complexity 1 35 0 340 160 120 0 chr1 235458989 235459089 -7205264 - L1MCa LINE L1 -4431 1995 1884 1478 18 0 0 chr1 235459115 235459285 -7205068 - L1PA3 LINE L1 0 6155 5986 2961 242 43 78 chr1 235459896 235461102 -7203251 + L1MC2 LINE L1 1 836 -5209 1802 120 23 62 chr1 235461102 235461410 -7202943 + AluSx SINE Alu 2 297 -15 2961 242 43 78 chr1 235461410 235461577 -7202776 + L1MC2 LINE L1 836 1007 -5038 1753 177 10 82 chr1 235461578 235461990 -7202363 + MLT1B LTR MaLR 1 382 -8 5813 234 67 18 chr1 235461996 235464739 -7199614 + L1MC2 LINE L1 1486 4454 -2110 339 363 0 0 chr1 235465371 235465539 -7198814 + (TGG)n Simple_repeat Simple_repeat 1 168 0 5048 206 62 11 chr1 235466453 235468630 -7195723 + L1MC2 LINE L1 4464 6760 -2 262 336 184 32 chr1 235469489 235469864 -7194489 - L3 LINE CR1 -77 1500 1069 700 151 16 0 chr1 235469876 235470002 -7194351 - MER96B DNA MER1_type? -10 407 280 228 158 73 12 chr1 235469977 235470059 -7194294 - MER96B DNA MER1_type? -64 353 267 * 5852 130 14 33 chr1 235470241 235471627 -7192726 - L1PA16 LINE L1 -9 6157 4783 2181 90 14 0 chr1 235472167 235472481 -7191872 - AluSc SINE Alu 0 318 1 1733 225 13 44 chr1 235473032 235473489 -7190864 + LTR47B LTR ERVL 1 443 0 2302 105 0 7 chr1 235473721 235474027 -7190326 - AluSx SINE Alu -8 304 1 400 332 111 5 chr1 235474107 235474324 -7190029 - MIR SINE MIR -13 249 10 180 125 0 0 chr1 235475325 235475357 -7188996 + (T)n Simple_repeat Simple_repeat 1 32 0 316 343 36 29 chr1 235475415 235475555 -7188798 - MIR3 SINE MIR -66 142 2 1400 136 9 0 chr1 235476472 235476700 -7187653 + L1MA1 LINE L1 6073 6302 0 25 65 0 0 chr1 235476700 235476746 -7187607 + AT_rich Low_complexity Low_complexity 1 46 0 2535 57 0 0 chr1 235477630 235477931 -7186422 - AluY SINE Alu -10 301 1 2626 32 3 0 chr1 235477996 235478304 -7186049 - AluY SINE Alu -2 309 1 2220 104 7 3 chr1 235479083 235479382 -7184971 - AluSc SINE Alu -9 300 1 319 411 18 6 chr1 235479481 235479644 -7184709 + L3 LINE CR1 1341 1505 -72 2292 93 3 34 chr1 235480000 235480321 -7184032 - AluSx SINE Alu -1 311 1 3688 83 10 59 chr1 235481917 235482492 -7181861 + LTR10B LTR ERV1 1 547 0 410 216 11 0 chr1 235483225 235483314 -7181039 + MER2 DNA MER2_type 1 89 -150 308 226 16 0 chr1 235483327 235483389 -7180964 + MER2 DNA MER2_type 283 345 0 208 170 57 0 chr1 235483415 235483468 -7180885 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 258 32 0 0 chr1 235483939 235483970 -7180383 + (TG)n Simple_repeat Simple_repeat 2 32 0 316 338 80 0 chr1 235484125 235484276 -7180077 + MIR SINE MIR 99 261 -1 639 158 33 0 chr1 235484368 235484488 -7179865 + L1MA5 LINE L1 6148 6271 -29 714 302 58 84 chr1 235484689 235484912 -7179441 + MER34 LTR ERV1 1 228 -314 1835 139 3 34 chr1 235484912 235485206 -7179147 + AluSx SINE Alu 1 285 -27 198 0 0 0 chr1 235485206 235485228 -7179125 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 714 302 58 84 chr1 235485228 235485560 -7178793 + MER34 LTR ERV1 226 542 0 569 291 36 61 chr1 235488342 235488589 -7175764 + MIR SINE MIR 21 261 -1 261 0 0 0 chr1 235489381 235489410 -7174943 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 297 0 0 0 chr1 235489409 235489442 -7174911 + (TA)n Simple_repeat Simple_repeat 1 33 0 236 285 164 48 chr1 235489742 235489828 -7174525 + MIR3 SINE MIR 14 89 -119 2134 103 7 0 chr1 235489828 235490118 -7174235 - AluSc SINE Alu -17 292 1 236 285 164 48 chr1 235490118 235490196 -7174157 + MIR3 SINE MIR 89 197 -11 1800 165 23 20 chr1 235491429 235491732 -7172621 + AluJo SINE Alu 1 304 -8 1709 163 0 3 chr1 235491831 235492131 -7172222 + L1MA6 LINE L1 5999 6297 -3 1679 292 75 43 chr1 235492404 235493360 -7170993 + L2 LINE L2 2243 3231 -82 2137 110 17 0 chr1 235493550 235493849 -7170504 - AluSx SINE Alu -6 306 3 186 71 48 24 chr1 235493927 235493969 -7170384 + (TA)n Simple_repeat Simple_repeat 1 43 0 202 160 40 0 chr1 235494466 235494516 -7169837 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 209 405 0 17 chr1 235494521 235494637 -7169716 - L2 LINE L2 -5 3267 3154 2247 109 0 0 chr1 235494674 235494977 -7169376 + AluSx SINE Alu 1 303 -9 1589 259 33 31 chr1 235495005 235495581 -7168772 + L1MC3 LINE L1 2 578 -5467 6795 228 48 48 chr1 235495673 235496020 -7168333 + L1MC3 LINE L1 573 918 -5646 1782 181 13 7 chr1 235496020 235496329 -7168024 - AluJb SINE Alu -1 311 1 6795 228 48 48 chr1 235496329 235500418 -7163935 + L1MC3 LINE L1 918 5117 -1447 2162 77 0 0 chr1 235500418 235500677 -7163676 + AluY SINE Alu 37 295 -16 6795 228 48 48 chr1 235500677 235501101 -7163252 + L1MC3 LINE L1 5117 5539 -1025 836 127 109 6 chr1 235501177 235501342 -7163011 - MER45B DNA AcHobo -330 710 529 651 211 67 91 chr1 235501346 235501515 -7162838 + L1MC3 LINE L1 6886 7045 -740 180 77 0 0 chr1 235501515 235501541 -7162812 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 651 211 67 91 chr1 235501541 235501712 -7162641 + L1MC3 LINE L1 7045 7218 -567 568 185 34 0 chr1 235501754 235501873 -7162480 + L1MC3 LINE L1 6275 6397 -1806 1032 171 0 30 chr1 235501873 235502072 -7162281 + L1MC3 LINE L1 7725 7917 -286 1857 162 32 29 chr1 235502082 235502638 -7161715 + MLT2A2 LTR ERVL 1 554 0 953 162 3 103 chr1 235502639 235502929 -7161424 + L1MC3 LINE L1 7925 8185 -18 1554 112 14 137 chr1 235504372 235504729 -7159624 - MER7A DNA MER2_type -34 312 2 28 61 0 0 chr1 235504729 235504778 -7159575 + AT_rich Low_complexity Low_complexity 1 49 0 1796 141 38 14 chr1 235504976 235505266 -7159087 + AluSx SINE Alu 6 302 -10 2075 123 6 49 chr1 235505285 235505648 -7158705 - AluJb SINE Alu 0 351 3 2075 125 6 40 chr1 235506074 235506420 -7157933 - AluJb SINE Alu 0 337 3 195 42 0 0 chr1 235506424 235506448 -7157905 + (T)n Simple_repeat Simple_repeat 1 24 0 232 262 19 0 chr1 235507750 235507853 -7156500 + GA-rich Low_complexity Low_complexity 2 106 0 382 304 249 33 chr1 235508536 235509682 -7154671 - L2 LINE L2 -189 3083 1684 1005 195 0 16 chr1 235509732 235509917 -7154436 + AluJo SINE Alu 123 304 -8 209 351 100 50 chr1 235509957 235510419 -7153934 - L2 LINE L2 -1783 1531 1047 189 214 71 0 chr1 235510478 235510520 -7153833 + L2 LINE L2 3170 3214 -58 369 272 97 9 chr1 235512798 235512912 -7151441 - L2 LINE L2 -3 3310 3187 243 277 36 18 chr1 235513627 235513739 -7150614 + L1ME4a LINE L1 5966 6079 -42 192 40 0 0 chr1 235515036 235515061 -7149292 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 215 345 0 0 chr1 235515885 235515943 -7148410 + MIR SINE MIR 194 251 -11 1820 149 22 0 chr1 235516587 235516894 -7147459 + AluSx SINE Alu 2 314 0 1432 182 6 11 chr1 235516928 235517240 -7147113 + MLT1A1 LTR MaLR 1 358 -7 4163 6 0 0 chr1 235518126 235518593 -7145760 + L1PA2 LINE L1 5689 6155 0 1300 173 25 115 chr1 235518622 235518945 -7145408 + AluJb SINE Alu 1 294 -18 2145 91 35 0 chr1 235519121 235519408 -7144945 + AluSx SINE Alu 1 297 -15 2141 67 42 11 chr1 235519479 235519763 -7144590 - AluY SINE Alu -18 293 1 21 36 0 0 chr1 235520468 235520496 -7143857 + AT_rich Low_complexity Low_complexity 1 28 0 250 271 74 66 chr1 235520773 235520895 -7143458 - MIR SINE MIR -120 142 20 2218 94 0 7 chr1 235521005 235521323 -7143030 + AluSc SINE Alu 1 309 0 1854 172 52 6 chr1 235522267 235522630 -7141723 + MLT2D LTR ERVL 1 478 -42 686 72 72 6 chr1 235522630 235522797 -7141556 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 576 57 114 0 chr1 235522815 235522973 -7141380 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 441 0 0 0 chr1 235522975 235523024 -7141329 + (CA)n Simple_repeat Simple_repeat 2 50 0 232 300 14 0 chr1 235523259 235523329 -7141024 + (TA)n Simple_repeat Simple_repeat 2 72 0 362 281 22 29 chr1 235524653 235524792 -7139561 - MIR SINE MIR -6 256 119 344 299 42 24 chr1 235524809 235524976 -7139377 + HAL1b LINE L1 217 386 -962 399 278 91 52 chr1 235525139 235525369 -7138984 + L1 LINE L1 4298 4536 -1610 514 284 173 37 chr1 235525377 235525729 -7138624 - L2 LINE L2 -902 2412 2013 346 147 191 0 chr1 235525755 235525823 -7138530 + L2 LINE L2 3232 3312 -1 2109 117 0 7 chr1 235526983 235527293 -7137060 - AluSg SINE Alu 0 308 1 2376 93 3 7 chr1 235528023 235528333 -7136020 + AluSq SINE Alu 1 309 -4 188 320 0 0 chr1 235529282 235529332 -7135021 - L2 LINE L2 0 3313 3264 183 80 0 0 chr1 235531312 235531337 -7133016 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 405 0 0 0 chr1 235531834 235531879 -7132474 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 185 371 145 0 chr1 235532154 235532313 -7132040 + L2 LINE L2 2865 3046 -226 2668 23 7 3 chr1 235532458 235532768 -7131585 - AluY SINE Alu 0 311 1 1547 163 39 36 chr1 235533104 235533411 -7130942 - AluJo SINE Alu -4 308 1 196 313 96 17 chr1 235533624 235533739 -7130614 + L2 LINE L2 3149 3272 0 2372 195 26 28 chr1 235534413 235534738 -7129615 + MER90 LTR ERV1 3 369 -245 1982 118 14 7 chr1 235534738 235535027 -7129326 + AluSc SINE Alu 1 291 -18 2372 195 26 28 chr1 235535027 235535273 -7129080 + MER90 LTR ERV1 369 614 0 21 0 0 0 chr1 235535273 235535294 -7129059 + AT_rich Low_complexity Low_complexity 1 21 0 2204 110 3 10 chr1 235537802 235538112 -7126241 + AluSg SINE Alu 1 308 -2 1532 132 0 64 chr1 235538361 235538627 -7125726 + AluSg SINE Alu 59 307 -3 871 128 17 22 chr1 235538644 235538824 -7125529 + GA-rich Low_complexity Low_complexity 1 179 0 360 70 35 18 chr1 235538824 235538881 -7125472 + (GAAA)n Simple_repeat Simple_repeat 1 58 0 4417 256 60 49 chr1 235538881 235540367 -7123986 - L1MDa LINE L1 -650 5986 4517 186 43 0 0 chr1 235540367 235540390 -7123963 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4417 256 60 49 chr1 235540390 235540414 -7123939 - L1MDa LINE L1 -2119 4517 4495 829 187 0 20 chr1 235540414 235540564 -7123789 - AluJo SINE Alu -165 147 1 4417 256 60 49 chr1 235540564 235542534 -7121819 - L1MDa LINE L1 -2141 4495 2394 195 42 0 0 chr1 235542535 235542559 -7121794 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1346 208 49 15 chr1 235542564 235542706 -7121647 - AluJo SINE Alu -38 274 138 285 98 0 0 chr1 235542706 235542747 -7121606 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1346 208 49 15 chr1 235542747 235542869 -7121484 - AluJo SINE Alu -174 138 1 2620 206 45 38 chr1 235542872 235543135 -7121218 - L1MDa LINE L1 -4148 2392 2132 2103 127 3 0 chr1 235543135 235543426 -7120927 + AluSx SINE Alu 5 296 -16 2620 206 45 38 chr1 235543426 235543997 -7120356 - L1MDa LINE L1 -4408 2132 1552 1072 196 34 47 chr1 235544484 235544806 -7119547 - L1MDa LINE L1 -4983 1557 1240 180 0 0 0 chr1 235544823 235544843 -7119510 + (TTA)n Simple_repeat Simple_repeat 1 20 0 910 113 97 38 chr1 235544862 235545048 -7119305 + MER30 DNA MER1_type 1 197 -33 759 258 130 39 chr1 235545059 235545188 -7119165 - L1MDa LINE L1 -5344 1196 1080 1754 185 0 7 chr1 235545188 235545491 -7118862 - AluSx SINE Alu -11 301 1 759 258 130 39 chr1 235545491 235545830 -7118523 - L1MDa LINE L1 -5460 1080 538 425 261 6 67 chr1 235545822 235546002 -7118351 + L1ME1 LINE L1 5952 6120 -46 * 519 243 20 7 chr1 235545890 235546038 -7118315 + L1MA10 LINE L1 6169 6318 -16 648 186 175 33 chr1 235546165 235546222 -7118131 - MER3 DNA MER1_type 0 209 161 222 37 0 0 chr1 235546222 235546249 -7118104 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2013 116 0 21 chr1 235546251 235546536 -7117817 - AluSx SINE Alu -33 279 1 648 186 175 33 chr1 235546536 235546658 -7117695 - MER3 DNA MER1_type -48 161 1 2285 156 43 103 chr1 235547131 235547740 -7116613 + L1MC1 LINE L1 5762 6333 0 2102 109 0 20 chr1 235547744 235548046 -7116307 + AluSq SINE Alu 1 296 -17 366 293 73 63 chr1 235548108 235548299 -7116054 + L2 LINE L2 3118 3310 -3 243 287 61 38 chr1 235548300 235548561 -7115792 + L1MC/D LINE L1 5273 5539 -2269 2548 57 0 0 chr1 235548756 235549056 -7115297 + AluY SINE Alu 1 300 -11 296 167 33 0 chr1 235549305 235549323 -7115030 - AluS SINE Alu -246 62 46 1684 102 9 0 chr1 235549323 235549548 -7114805 - AluSg/x SINE Alu -12 298 72 296 167 33 0 chr1 235549548 235549589 -7114764 - AluS SINE Alu -262 46 1 2203 135 125 2 chr1 235550026 235550568 -7113785 - MER39B LTR ERV1 0 653 1 921 218 113 79 chr1 235550831 235551101 -7113252 - L1ME2 LINE L1 -12 6152 5856 2266 98 3 7 chr1 235551101 235551408 -7112945 - AluSg SINE Alu -4 306 1 921 218 113 79 chr1 235551408 235551633 -7112720 - L1ME2 LINE L1 -308 5856 5640 195 305 86 59 chr1 235551772 235551959 -7112394 + L2 LINE L2 1385 1576 -1738 1538 133 16 170 chr1 235552285 235552482 -7111871 + Tigger2 DNA MER2_type 1 227 -2491 2190 146 0 0 chr1 235552482 235552791 -7111562 - AluSx SINE Alu -3 309 1 1538 133 16 170 chr1 235552791 235553112 -7111241 + Tigger2 DNA MER2_type 227 2716 -2 248 324 164 28 chr1 235553209 235553496 -7110857 - L2 LINE L2 -1864 1450 1125 226 49 24 24 chr1 235553686 235553727 -7110626 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 506 203 152 7 chr1 235553913 235554051 -7110302 - MER5A DNA MER1_type -6 183 26 3179 125 101 10 chr1 235554133 235554201 -7110152 + LTR24C LTR ERV1 1 61 -574 2132 140 3 0 chr1 235554201 235554509 -7109844 + AluSx SINE Alu 1 309 -3 3179 125 101 10 chr1 235554509 235555022 -7109331 + LTR24C LTR ERV1 61 635 0 2456 64 0 0 chr1 235555437 235555751 -7108602 + L1PA6 LINE L1 5841 6154 0 3007 155 33 24 chr1 235557089 235557638 -7106715 + MER41C LTR ERV1 1 554 0 1490 153 73 98 chr1 235558145 235558583 -7105770 + LTR49 LTR ERV1 1 427 -168 2316 117 0 0 chr1 235558608 235558917 -7105436 - AluSx SINE Alu -3 309 1 273 228 22 22 chr1 235558922 235559014 -7105339 + LTR48 LTR ERV1 631 722 -65 * 324 175 21 62 chr1 235558991 235559088 -7105265 + MER34B LTR ERV1 473 565 0 2219 127 0 0 chr1 235561794 235562093 -7102260 + AluSc SINE Alu 3 301 -8 1000 239 67 13 chr1 235562276 235562769 -7101584 - L1MCa LINE L1 -3948 2616 2079 1850 109 8 0 chr1 235562769 235563016 -7101337 + AluSx SINE Alu 56 304 -8 1000 239 67 13 chr1 235563016 235563087 -7101266 - L1MCa LINE L1 -4485 2079 2013 814 207 40 46 chr1 235563094 235563398 -7100955 - L1MCa LINE L1 -4752 1812 1511 * 1662 221 25 73 chr1 235563377 235563517 -7100836 - L1MCa LINE L1 -4911 1134 989 1933 132 6 60 chr1 235563517 235563835 -7100518 - AluSx SINE Alu -11 301 1 1662 221 25 73 chr1 235563835 235564304 -7100049 - L1MCa LINE L1 -5056 989 570 480 346 5 5 chr1 235564544 235564749 -7099604 - L1MCa LINE L1 -5637 408 204 302 289 0 48 chr1 235564766 235564870 -7099483 - L1MCa LINE L1 -5819 226 128 3755 59 0 6 chr1 235564909 235565386 -7098967 - L1PA6 LINE L1 -2 6152 5679 369 240 10 0 chr1 235565390 235565494 -7098859 - L1MCa LINE L1 -5903 142 38 368 323 102 16 chr1 235565586 235565772 -7098581 + MIR SINE MIR 57 258 -4 873 208 174 47 chr1 235565787 235566172 -7098181 - MLT1C LTR MaLR 0 467 34 306 274 119 48 chr1 235567610 235567726 -7096627 - MIR SINE MIR 0 262 129 2809 191 67 39 chr1 235567726 235568398 -7095955 + LTR8 LTR ERV1 1 691 0 306 274 119 48 chr1 235568398 235568449 -7095904 - MIR SINE MIR -133 129 83 1173 205 49 57 chr1 235568618 235568991 -7095362 + MER67C LTR ERV1 1 403 -243 264 167 30 15 chr1 235569084 235569150 -7095203 + MER67D LTR ERV1 448 514 0 234 0 0 0 chr1 235569161 235569187 -7095166 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1956 90 10 35 chr1 235569189 235569478 -7094875 - AluSp SINE Alu -31 282 1 594 299 62 37 chr1 235570734 235570975 -7093378 - MIR SINE MIR -14 248 2 389 304 52 52 chr1 235571480 235571674 -7092679 + L2 LINE L2 3120 3313 0 2260 98 0 3 chr1 235571733 235572028 -7092325 + AluSx SINE Alu 2 295 -17 551 324 80 44 chr1 235572028 235572417 -7091936 - L2 LINE L2 -21 3292 2890 1326 152 0 62 chr1 235572419 235572662 -7091691 + AluJo SINE Alu 85 312 0 1024 312 42 51 chr1 235572677 235573299 -7091054 - L2 LINE L2 -429 2885 2270 324 0 0 0 chr1 235575793 235575829 -7088524 + (TA)n Simple_repeat Simple_repeat 2 37 0 309 228 11 43 chr1 235575829 235575921 -7088432 - L1MC4 LINE L1 -1339 6703 6615 405 0 0 0 chr1 235575953 235575998 -7088355 + (CA)n Simple_repeat Simple_repeat 2 46 0 423 243 193 58 chr1 235576006 235576265 -7088088 + L2 LINE L2 2414 2707 -607 5569 164 12 17 chr1 235576448 235578496 -7085857 - L1PB4 LINE L1 -5 6151 4112 2092 116 18 0 chr1 235578548 235578832 -7085521 + AluSx SINE Alu 1 289 -23 41 78 0 0 chr1 235578930 235579020 -7085333 + AT_rich Low_complexity Low_complexity 1 90 0 25 0 0 0 chr1 235579034 235579059 -7085294 + AT_rich Low_complexity Low_complexity 1 25 0 434 222 9 0 chr1 235579380 235579488 -7084865 + MER103 DNA DNA 58 166 0 332 268 7 0 chr1 235581086 235581228 -7083125 + (CACCAT)n Simple_repeat Simple_repeat 3 145 0 262 288 0 0 chr1 235581228 235581294 -7083059 - MIR SINE MIR -1 261 196 595 299 106 31 chr1 235582212 235582570 -7081783 + MLT1J2 LTR MaLR 45 429 -21 2639 128 17 32 chr1 235582836 235582914 -7081439 + L1PB2 LINE L1 5691 5769 -382 2186 108 0 7 chr1 235582914 235583211 -7081142 + AluSg SINE Alu 1 295 -15 2639 128 17 32 chr1 235583211 235583593 -7080760 + L1PB2 LINE L1 5769 6144 -7 1559 159 93 0 chr1 235584198 235584468 -7079885 + AluJo SINE Alu 16 310 -2 757 275 80 54 chr1 235585007 235585433 -7078920 + MLT1J2 LTR MaLR 7 443 -7 2060 95 42 0 chr1 235585940 235585954 -7078399 - AluSq SINE Alu -16 297 285 304 28 0 0 chr1 235585954 235585990 -7078363 + (TTTA)n Simple_repeat Simple_repeat 1 104 0 2060 95 42 0 chr1 235585990 235586258 -7078095 - AluSq SINE Alu -28 285 3 186 43 0 0 chr1 235586272 235586295 -7078058 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 257 348 68 17 chr1 235587326 235587444 -7076909 + L2 LINE L2 3143 3266 -6 2239 92 0 51 chr1 235588128 235588442 -7075911 + AluSx SINE Alu 1 298 -14 367 265 33 20 chr1 235588699 235588850 -7075503 - HAL1b LINE L1 -803 545 393 253 177 258 0 chr1 235588918 235588980 -7075373 + MER2 DNA MER2_type 267 344 -1 291 109 44 58 chr1 235589014 235589151 -7075202 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 1123 172 5 0 chr1 235589208 235589411 -7074942 - MER2 DNA MER2_type -138 207 4 435 286 104 34 chr1 235589415 235589570 -7074783 - HAL1b LINE L1 -967 381 238 2179 116 13 7 chr1 235589570 235589880 -7074473 - AluSx SINE Alu 0 312 1 435 286 104 34 chr1 235589880 235589893 -7074460 - HAL1b LINE L1 -1110 238 227 1528 216 3 35 chr1 235589893 235590203 -7074150 - AluJo SINE Alu -12 300 1 435 286 104 34 chr1 235590203 235590302 -7074051 - HAL1b LINE L1 -1121 227 94 2178 109 0 0 chr1 235590821 235591134 -7073219 - AluSx SINE Alu 0 313 1 1402 142 31 0 chr1 235591632 235591858 -7072495 - L1PA16 LINE L1 -9 6157 5925 264 116 2 11 chr1 235591858 235591919 -7072434 + L1PA16 LINE L1 5893 5954 -200 322 390 29 5 chr1 235592634 235592844 -7071509 + LTR16B LTR ERVL 97 311 -153 2371 114 0 0 chr1 235593206 235593512 -7070841 - AluSx SINE Alu -6 306 1 642 290 45 45 chr1 235594401 235594646 -7069707 - MIR SINE MIR -17 245 1 360 330 54 86 chr1 235594743 235595094 -7069259 - L2 LINE L2 -16 3256 2917 2115 144 33 25 chr1 235596297 235596658 -7067695 + THE1B LTR MaLR 1 364 0 949 313 99 30 chr1 235597021 235597610 -7066743 + L2 LINE L2 2110 2807 -507 255 192 82 0 chr1 235597663 235597736 -7066617 - MER112 DNA MER1_type -88 172 94 1853 157 34 6 chr1 235597806 235598130 -7066223 - MER21B LTR ERV1 -113 750 418 2119 193 122 7 chr1 235598130 235598581 -7065772 - MER21B LTR ERV1 -344 519 17 253 276 0 13 chr1 235598615 235598691 -7065662 - MER112 DNA MER1_type -185 75 1 1187 306 43 43 chr1 235598693 235599202 -7065151 + L2 LINE L2 2804 3312 -1 423 326 15 15 chr1 235599867 235600002 -7064351 + MIR3 SINE MIR 24 158 -50 564 280 164 0 chr1 235600020 235600234 -7064119 - MIR SINE MIR -13 249 1 470 106 17 11 chr1 235600274 235600509 -7063844 + AluSx SINE Alu 1 285 -25 2788 189 116 8 chr1 235600569 235601231 -7063122 + MER50 LTR ERV1 1 734 0 201 379 57 7 chr1 235601274 235601414 -7062939 + L2 LINE L2 3161 3307 -6 189 256 128 0 chr1 235601417 235601495 -7062858 + L3 LINE CR1 1486 1573 -4 726 333 114 17 chr1 235601513 235601978 -7062375 + L2 LINE L2 1776 2285 -1029 501 341 125 9 chr1 235602445 235602773 -7061580 + L2 LINE L2 2332 2697 -617 198 333 27 13 chr1 235602984 235603059 -7061294 + L2 LINE L2 3177 3252 -20 2312 150 4 5 chr1 235603265 235603803 -7060550 + LTR69 LTR ERVL 3 580 -8 199 275 58 14 chr1 235604189 235604258 -7060095 + L3 LINE CR1 230 301 -1276 219 273 18 0 chr1 235606334 235606389 -7057964 - L2 LINE L2 0 3313 3258 2499 69 3 0 chr1 235606544 235606848 -7057505 + AluSp SINE Alu 1 305 -8 1440 175 40 24 chr1 235606947 235607244 -7057109 + AluJo SINE Alu 2 303 -9 773 116 50 0 chr1 235607256 235607377 -7056976 + AluJo SINE Alu 1 127 -175 336 302 12 0 chr1 235607718 235607804 -7056549 + MIR SINE MIR 65 151 -111 283 191 46 15 chr1 235607838 235607969 -7056384 + (TA)n Simple_repeat Simple_repeat 1 135 0 533 241 135 12 chr1 235608435 235608605 -7055748 + MIR SINE MIR 72 262 0 285 284 118 10 chr1 235609851 235609953 -7054400 + L2 LINE L2 3133 3245 -27 180 250 146 0 chr1 235609988 235610036 -7054317 + L2 LINE L2 3241 3295 -18 2261 86 17 0 chr1 235610165 235610456 -7053897 - AluSx SINE Alu -16 296 1 272 221 265 44 chr1 235610619 235610800 -7053553 + L3 LINE CR1 778 998 -579 279 0 0 0 chr1 235610866 235610897 -7053456 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 450 0 0 0 chr1 235610896 235610946 -7053407 + (TA)n Simple_repeat Simple_repeat 1 50 0 506 318 88 18 chr1 235611097 235611314 -7053039 - MIR SINE MIR -4 258 27 2215 136 40 10 chr1 235611448 235611844 -7052509 + MSTA LTR MaLR 1 408 -20 371 246 97 0 chr1 235612594 235612708 -7051645 - MIR SINE MIR -71 191 67 182 385 8 25 chr1 235614200 235614322 -7050031 + MIR SINE MIR 72 191 -71 1326 121 0 34 chr1 235614386 235614593 -7049760 + AluJo SINE Alu 113 312 0 707 296 39 50 chr1 235614928 235615344 -7049009 + REP3 LTR ERV 1 411 -151 233 247 47 24 chr1 235615879 235615964 -7048389 - HAL1 LINE L1 -2373 134 48 2067 125 17 0 chr1 235616581 235616869 -7047484 - AluSx SINE Alu -15 297 5 311 264 192 17 chr1 235617098 235617404 -7046949 - MLT1K LTR MaLR -26 562 174 1532 104 45 0 chr1 235618173 235618393 -7045960 + MER30 DNA MER1_type 1 230 0 225 266 35 29 chr1 235620696 235620869 -7043484 + (TA)n Simple_repeat Simple_repeat 2 175 0 396 0 0 0 chr1 235620979 235621023 -7043330 + (TG)n Simple_repeat Simple_repeat 1 44 0 333 0 0 0 chr1 235621165 235621202 -7043151 + (TG)n Simple_repeat Simple_repeat 2 38 0 183 74 0 0 chr1 235621202 235621224 -7043129 + (CATATA)n Simple_repeat Simple_repeat 2 23 0 231 0 0 0 chr1 235621254 235621282 -7043071 - L1PA16 LINE L1 -22 6144 6117 208 325 52 13 chr1 235621320 235621397 -7042956 + MIR SINE MIR 41 120 -142 222 316 82 20 chr1 235621992 235622090 -7042263 - L2 LINE L2 -16 3256 3153 279 0 0 0 chr1 235622531 235622562 -7041791 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1787 137 26 0 chr1 235625160 235625467 -7038886 + L1MA4 LINE L1 5970 6284 -16 2333 121 0 3 chr1 235625554 235625927 -7038426 + AluSx SINE Alu 1 372 0 2114 98 7 29 chr1 235628043 235628349 -7036004 - AluSx SINE Alu -13 299 1 264 280 11 32 chr1 235628767 235628860 -7035493 + L2 LINE L2 2263 2353 -961 450 335 96 42 chr1 235629100 235629757 -7034596 + L2 LINE L2 2544 3242 -30 2022 123 0 0 chr1 235630282 235630559 -7033794 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr1 235630560 235630585 -7033768 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 501 17 0 0 chr1 235630584 235630642 -7033711 + (TA)n Simple_repeat Simple_repeat 1 58 0 246 338 117 32 chr1 235630690 235630844 -7033509 - L2 LINE L2 -337 2976 2810 571 211 23 0 chr1 235630862 235630995 -7033358 + MER34 LTR ERV1 1 136 -406 227 207 61 37 chr1 235631218 235631300 -7033053 + MER34 LTR ERV1 438 521 -21 2116 39 46 4 chr1 235631300 235631560 -7032793 + AluY SINE Alu 33 303 -8 641 300 193 13 chr1 235631680 235632130 -7032223 - L2 LINE L2 -626 2688 2158 327 315 116 14 chr1 235632236 235632382 -7031971 - MIR3 SINE MIR -8 200 40 224 286 92 10 chr1 235632626 235632724 -7031629 + MIR SINE MIR 103 208 -54 2329 78 0 0 chr1 235632814 235633141 -7031212 + AluY SINE Alu 1 327 0 1786 202 0 3 chr1 235633147 235633449 -7030904 + AluJo SINE Alu 1 301 -11 29 0 0 0 chr1 235633502 235633531 -7030822 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr1 235634607 235634642 -7029711 + AT_rich Low_complexity Low_complexity 1 35 0 190 358 0 15 chr1 235634982 235635049 -7029304 + L2 LINE L2 3206 3271 -1 191 36 36 0 chr1 235635171 235635199 -7029154 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 233 315 45 27 chr1 235635201 235635312 -7029041 + MER5A DNA MER1_type 50 162 -16 420 91 0 0 chr1 235635772 235635838 -7028515 + (CA)n Simple_repeat Simple_repeat 2 67 0 309 26 0 0 chr1 235636149 235636187 -7028166 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 1085 112 40 165 chr1 235636839 235636924 -7027429 - L1MA5A LINE L1 -1 6296 6202 1703 143 33 47 chr1 235636924 235637224 -7027129 + AluJb SINE Alu 14 309 -3 1085 112 40 165 chr1 235637224 235637460 -7026893 - L1MA5A LINE L1 -95 6202 6015 368 265 7 0 chr1 235640862 235640998 -7023355 + (CA)n Simple_repeat Simple_repeat 2 138 0 221 346 84 9 chr1 235641283 235641390 -7022963 - L2 LINE L2 0 3272 3158 969 150 27 0 chr1 235641408 235641595 -7022758 + L1MD3 LINE L1 7794 7985 -10 2578 49 0 0 chr1 235641645 235641949 -7022404 + AluY SINE Alu 1 304 -7 421 262 14 48 chr1 235642106 235642251 -7022102 + MIR SINE MIR 46 185 -77 2250 116 0 0 chr1 235642766 235643077 -7021276 + AluSx SINE Alu 2 312 0 234 210 16 0 chr1 235643736 235643798 -7020555 + A-rich Low_complexity Low_complexity 4 66 0 2969 166 55 4 chr1 235643828 235644388 -7019965 + LTR59 LTR ERV1 3 591 -6 233 217 0 17 chr1 235644703 235644763 -7019590 + L1MCa LINE L1 2006 2064 -4362 226 158 0 105 chr1 235644742 235644818 -7019535 - L1MCa LINE L1 -4359 2067 2000 * 1886 172 0 7 chr1 235645141 235645444 -7018909 + AluJb SINE Alu 1 301 -11 528 305 52 33 chr1 235645513 235645723 -7018630 + MIR SINE MIR 10 223 -39 189 74 0 0 chr1 235645731 235645758 -7018595 + (CAT)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr1 235646129 235646157 -7018196 + AT_rich Low_complexity Low_complexity 1 28 0 265 308 25 17 chr1 235697147 235697267 -6967086 + L1ME LINE L1 464 584 -5946 2202 96 0 0 chr1 235697719 235698029 -6966324 + AluSq SINE Alu 1 310 0 686 260 78 57 chr1 235698144 235698890 -6965463 + L1ME LINE L1 1247 2064 -4657 2294 270 83 34 chr1 235699412 235701374 -6962979 + L1ME LINE L1 2384 4377 -2163 528 86 16 14 chr1 235701389 235701632 -6962721 + AluSc SINE Alu 14 289 -20 451 279 31 6 chr1 235701646 235701807 -6962546 + L1ME LINE L1 4389 4553 -1987 476 322 40 20 chr1 235702067 235702266 -6962087 + MIR SINE MIR 50 252 -10 381 172 0 46 chr1 235702533 235702620 -6961733 - L1ME3A LINE L1 -33 6137 6055 205 364 63 42 chr1 235702654 235702797 -6961556 + MIR3 SINE MIR 2 147 -61 266 355 150 29 chr1 235702871 235703452 -6960901 + L2 LINE L2 1988 2638 -676 388 327 61 37 chr1 235703866 235704080 -6960273 - MIR SINE MIR -24 238 20 504 68 0 0 chr1 235704197 235704270 -6960083 + (CA)n Simple_repeat Simple_repeat 2 74 0 3569 122 50 28 chr1 235704560 235705199 -6959154 - MER39B LTR ERV1 0 653 1 2326 93 3 0 chr1 235705451 235705751 -6958602 - AluSc SINE Alu -8 301 1 267 188 27 125 chr1 235705794 235705906 -6958447 + LTR67 LTR ERVL 457 557 0 28 0 0 0 chr1 235705969 235705997 -6958356 + AT_rich Low_complexity Low_complexity 1 28 0 2161 96 3 20 chr1 235707298 235707599 -6956754 - AluSc SINE Alu -13 296 1 1848 139 30 30 chr1 235707685 235707980 -6956373 - AluSx SINE Alu -17 295 1 918 349 55 48 chr1 235708166 235708450 -6955903 + L2 LINE L2 2433 2713 -600 1905 108 16 0 chr1 235708450 235708708 -6955645 - AluSc SINE Alu -11 298 37 918 349 55 48 chr1 235708708 235709114 -6955239 + L2 LINE L2 2713 3144 -169 316 198 10 31 chr1 235709124 235709182 -6955171 + CT-rich Low_complexity Low_complexity 1 58 -36 2282 41 4 0 chr1 235709182 235709452 -6954901 - AluY SINE Alu -5 306 36 316 198 10 31 chr1 235709452 235709489 -6954864 + CT-rich Low_complexity Low_complexity 58 94 0 439 290 116 24 chr1 235709652 235709859 -6954494 - L2 LINE L2 -2 3311 3086 2050 115 3 3 chr1 235710134 235710422 -6953931 - AluSg SINE Alu -20 290 3 693 318 78 47 chr1 235711252 235711674 -6952679 + L3 LINE CR1 494 928 -649 297 185 107 174 chr1 235711700 235711774 -6952579 - MIR SINE MIR 0 262 185 1892 170 0 3 chr1 235711774 235712086 -6952267 + AluJb SINE Alu 1 311 -1 297 185 107 174 chr1 235712086 235712189 -6952164 - MIR SINE MIR -77 185 97 * 300 293 218 8 chr1 235712184 235712317 -6952036 + L3 LINE CR1 931 1091 -486 1047 148 0 0 chr1 235712376 235712531 -6951822 - AluSg/x SINE Alu -18 294 140 4233 57 2 0 chr1 235712639 235713203 -6951150 - L1PA8 LINE L1 -221 5951 5387 2681 116 101 20 chr1 235713227 235713763 -6950590 - Tigger3b DNA MER2_type -591 640 62 5627 98 17 10 chr1 235713933 235714281 -6950072 - L1PB1 LINE L1 -2 6149 5805 486 0 0 0 chr1 235714281 235714335 -6950018 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 5627 98 17 10 chr1 235714335 235715011 -6949342 - L1PB1 LINE L1 -346 5805 5105 902 284 128 38 chr1 235715264 235715733 -6948620 - L2 LINE L2 -501 2813 2303 4937 29 3 0 chr1 235716115 235716817 -6947536 + L1PA4 LINE L1 5167 5870 -285 1624 115 4 0 chr1 235717798 235718024 -6946329 + AluY SINE Alu 85 311 0 1421 171 158 16 chr1 235718143 235718465 -6945888 - MLT1A2 LTR MaLR -4 370 3 247 218 109 59 chr1 235718717 235718818 -6945535 - MIR3 SINE MIR -4 204 99 185 333 0 0 chr1 235718810 235718858 -6945495 + L3b LINE CR1 1536 1583 0 * 26 64 0 0 chr1 235720004 235720051 -6944302 + AT_rich Low_complexity Low_complexity 1 47 0 1496 206 42 28 chr1 235720298 235720658 -6943695 - MLT1A1 LTR MaLR 0 365 1 324 0 0 0 chr1 235720722 235720758 -6943595 + (CA)n Simple_repeat Simple_repeat 2 37 0 281 185 22 22 chr1 235720765 235720857 -6943496 + (TA)n Simple_repeat Simple_repeat 1 92 0 1628 219 58 0 chr1 235720885 235721228 -6943125 - MLT1A1 LTR MaLR 0 365 3 222 324 126 9 chr1 235721624 235721735 -6942618 - MIR3 SINE MIR -48 160 37 2352 84 17 0 chr1 235723253 235723549 -6940804 + AluSp SINE Alu 1 301 -12 27 0 0 0 chr1 235723549 235723576 -6940777 + AT_rich Low_complexity Low_complexity 1 27 0 304 375 68 26 chr1 235723740 235723932 -6940421 - MIR3 SINE MIR -6 202 3 238 273 55 82 chr1 235724466 235724576 -6939777 + MIR SINE MIR 82 188 -74 1728 25 10 0 chr1 235724760 235724964 -6939389 + L1PA3 LINE L1 5950 6155 0 220 27 54 0 chr1 235724968 235725005 -6939348 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 213 191 29 59 chr1 235725149 235725217 -6939136 + MIR3 SINE MIR 9 74 -134 1896 98 0 40 chr1 235725253 235725530 -6938823 + AluSc SINE Alu 35 300 -9 2240 113 0 0 chr1 235726699 235727008 -6937345 + AluSg SINE Alu 1 309 -1 1195 113 0 0 chr1 235727008 235727167 -6937186 + AluSg/x SINE Alu 134 292 -20 28 0 0 0 chr1 235727167 235727195 -6937158 + AT_rich Low_complexity Low_complexity 1 28 0 269 217 83 92 chr1 235727424 235727493 -6936860 - L2 LINE L2 0 3313 3244 666 125 15 29 chr1 235727493 235727629 -6936724 + L1MA6 LINE L1 6165 6298 -2 269 217 83 92 chr1 235727629 235727679 -6936674 - L2 LINE L2 -69 3244 3195 2156 125 3 0 chr1 235728095 235728390 -6935963 + AluSx SINE Alu 1 296 -16 254 279 125 19 chr1 235728449 235728553 -6935800 + MIR3 SINE MIR 67 181 -27 286 113 19 19 chr1 235728716 235728769 -6935584 + LTR53 LTR ERVL 1 53 -466 676 167 0 0 chr1 235728875 235728995 -6935358 - L1PB4 LINE L1 -132 6024 5905 235 330 0 53 chr1 235729184 235729278 -6935075 + L2 LINE L2 3182 3270 -43 195 100 0 0 chr1 235729294 235729324 -6935029 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 295 291 64 9 chr1 235730214 235730324 -6934029 - L2 LINE L2 -1 3271 3156 194 277 151 25 chr1 235730936 235731055 -6933298 - MIR SINE MIR -15 193 59 1243 180 29 113 chr1 235731206 235731517 -6932836 + AluJo SINE Alu 14 298 -14 836 255 121 43 chr1 235731598 235732126 -6932227 + MLT1G LTR MaLR 1 526 -64 284 276 61 29 chr1 235732343 235732462 -6931891 - MIR SINE MIR -70 138 20 712 251 28 0 chr1 235732594 235732809 -6931544 + L1MD3 LINE L1 7765 7985 -10 1962 149 0 0 chr1 235733955 235734260 -6930093 - AluSx SINE Alu 0 305 1 26 50 0 0 chr1 235735070 235735110 -6929243 + AT_rich Low_complexity Low_complexity 1 40 0 509 97 28 0 chr1 235735171 235735243 -6929110 - AluSg/x SINE Alu -164 146 73 1274 111 0 0 chr1 235735243 235735405 -6928948 - AluSx SINE Alu -150 162 1 2081 208 32 9 chr1 235735406 235735939 -6928414 - L1M4 LINE L1 -815 5331 4787 330 26 0 0 chr1 235735939 235735978 -6928375 + (TC)n Simple_repeat Simple_repeat 2 40 0 1359 178 0 73 chr1 235735986 235736261 -6928092 - AluJo SINE Alu -57 255 1 1460 214 87 28 chr1 235736261 235736719 -6927634 - L1M4 LINE L1 -1349 4797 4313 1790 196 41 22 chr1 235736874 235737287 -6927066 - L1MA4 LINE L1 -20 6280 5860 1512 121 38 53 chr1 235737388 235737653 -6926700 - L1MA4 LINE L1 -630 5670 5410 187 333 0 0 chr1 235737719 235737773 -6926580 + L2 LINE L2 3006 3059 -213 662 294 88 84 chr1 235737908 235738405 -6925948 + MLT1J LTR MaLR 1 499 -12 266 349 0 0 chr1 235738426 235738492 -6925861 + L2 LINE L2 3197 3262 -10 443 360 0 16 chr1 235738792 235738981 -6925372 - MIR3 SINE MIR -1 207 22 585 172 40 17 chr1 235739238 235739412 -6924941 + CT-rich Low_complexity Low_complexity 3 180 0 467 69 14 0 chr1 235739562 235739634 -6924719 + (GA)n Simple_repeat Simple_repeat 1 73 0 230 307 40 30 chr1 235739731 235739832 -6924521 + MLT1L LTR MaLR 378 479 -136 951 156 18 30 chr1 235742209 235742376 -6921977 - FRAM SINE Alu -13 163 1 2239 96 3 0 chr1 235742644 235742945 -6921408 - AluY SINE Alu -9 302 1 233 379 45 0 chr1 235743010 235743142 -6921211 + L2 LINE L2 2601 2738 -576 494 221 63 31 chr1 235743352 235743479 -6920874 + MER5A DNA MER1_type 3 133 -56 341 335 53 0 chr1 235743699 235743851 -6920502 - MIR3 SINE MIR -2 206 47 803 31 31 0 chr1 235745084 235745180 -6919173 + L1PA4 LINE L1 6057 6155 0 1901 136 104 12 chr1 235745214 235745559 -6918794 + MSTA LTR MaLR 1 377 -51 2183 119 0 0 chr1 235745590 235745884 -6918469 + AluSg SINE Alu 1 294 -16 2462 73 0 0 chr1 235745886 235746187 -6918166 + AluY SINE Alu 1 301 -10 317 133 33 17 chr1 235747470 235747530 -6916823 - LTR5 LTR ERVK 0 969 909 1525 262 79 28 chr1 235747883 235748407 -6915946 - L1MEc LINE L1 -3391 2755 2231 540 111 0 0 chr1 235748407 235748488 -6915865 + (TA)n Simple_repeat Simple_repeat 2 82 0 1525 262 79 28 chr1 235748488 235748617 -6915736 - L1MEc LINE L1 -3915 2231 2110 2414 236 100 11 chr1 235748946 235749658 -6914695 - L1M4 LINE L1 -854 5292 4518 325 315 70 50 chr1 235749650 235749891 -6914462 + L1ME3A LINE L1 5599 5844 -326 * 191 295 188 27 chr1 235750849 235750961 -6913392 + L2 LINE L2 3161 3290 -23 2176 132 0 0 chr1 235751461 235751772 -6912581 - AluSx SINE Alu -1 311 1 2366 105 0 3 chr1 235751994 235752307 -6912046 - AluSx SINE Alu 0 312 1 180 200 0 0 chr1 235753778 235753818 -6910535 + GA-rich Low_complexity Low_complexity 3 42 0 22 56 0 0 chr1 235754064 235754100 -6910253 + AT_rich Low_complexity Low_complexity 1 36 0 465 296 13 19 chr1 235754697 235754856 -6909497 + L2 LINE L2 3152 3309 -4 218 306 14 14 chr1 235756047 235756119 -6908234 + L2 LINE L2 2985 3056 -216 1366 188 58 55 chr1 235757453 235757745 -6906608 + AluJo SINE Alu 1 293 -19 5596 144 42 4 chr1 235757749 235758664 -6905689 - L1MC1 LINE L1 -16 6317 5369 641 263 54 11 chr1 235759664 235759850 -6904503 - L2 LINE L2 -267 3046 2853 2411 60 0 0 chr1 235759887 235760192 -6904161 + AluY SINE Alu 1 305 0 625 225 63 55 chr1 235760241 235760486 -6903867 - L1MC5 LINE L1 -20 7941 7692 213 39 0 0 chr1 235760486 235760512 -6903841 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 625 225 63 55 chr1 235760512 235760537 -6903816 - L1MC5 LINE L1 -269 7692 7669 455 246 45 60 chr1 235760552 235760736 -6903617 - MER63A DNA MER1_type -1492 196 14 2362 133 122 10 chr1 235760736 235761121 -6903232 + MSTA LTR MaLR 1 428 0 455 246 45 60 chr1 235761121 235761135 -6903218 - MER63A DNA MER1_type -1674 14 1 1292 215 88 55 chr1 235761137 235761705 -6902648 - L1MC5 LINE L1 -289 7672 7086 574 197 0 76 chr1 235761713 235761845 -6902508 - FLAM_A SINE Alu -8 134 13 464 307 18 48 chr1 235761845 235762073 -6902280 - L2 LINE L2 -600 2714 2494 1717 181 71 3 chr1 235762987 235763325 -6901028 + LTR53 LTR ERVL 159 519 0 2566 72 3 0 chr1 235763783 235764090 -6900263 - AluSp SINE Alu -5 308 1 213 271 12 71 chr1 235764702 235764787 -6899566 - L2 LINE L2 0 3272 3193 1383 272 132 63 chr1 235765114 235766280 -6898073 - HAL1 LINE L1 -732 1775 529 931 159 74 0 chr1 235766305 235766481 -6897872 - MER20 DNA MER1_type 0 219 31 253 321 117 48 chr1 235766488 235766968 -6897385 - HAL1 LINE L1 -1991 516 4 207 242 0 63 chr1 235767582 235767677 -6896676 + A-rich Low_complexity Low_complexity 3 91 0 2217 58 4 4 chr1 235768758 235769032 -6895321 - AluY SINE Alu -16 295 22 2038 187 147 5 chr1 235769477 235769881 -6894472 + MLT2B2 LTR ERVL 1 477 -38 432 0 0 0 chr1 235769881 235769929 -6894424 + (TG)n Simple_repeat Simple_repeat 2 49 0 2038 187 147 5 chr1 235769929 235769973 -6894380 + MLT2B2 LTR ERVL 477 513 -2 2616 62 0 0 chr1 235769980 235770289 -6894064 - AluY SINE Alu -2 309 1 375 292 150 17 chr1 235770299 235770549 -6893804 + L2 LINE L2 2779 3069 -244 592 259 117 36 chr1 235770622 235770987 -6893366 - L1MCc LINE L1 -4891 1532 1383 189 74 0 0 chr1 235770987 235771014 -6893339 + (TG)n Simple_repeat Simple_repeat 2 28 0 592 259 117 36 chr1 235771014 235771293 -6893060 - L1MCc LINE L1 -5040 1383 1128 199 77 26 26 chr1 235771472 235771511 -6892842 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 282 265 44 0 chr1 235771856 235771924 -6892429 - L1MCc LINE L1 -6013 410 340 404 279 49 20 chr1 235771982 235772186 -6892167 - L1MCc LINE L1 -6179 244 35 185 164 82 66 chr1 235774213 235774274 -6890079 - MIR3 SINE MIR -15 193 132 211 211 0 0 chr1 235774897 235774935 -6889418 + GA-rich Low_complexity Low_complexity 3 40 0 2519 64 0 0 chr1 235775334 235775630 -6888723 + AluY SINE Alu 1 296 -15 320 316 57 62 chr1 235775881 235776090 -6888263 - HAL1b LINE L1 -1115 233 26 209 52 35 86 chr1 235777112 235777170 -6887183 + (TATAA)n Simple_repeat Simple_repeat 2 56 0 186 189 19 75 chr1 235777423 235777476 -6886877 - MIR SINE MIR -1 261 212 2635 214 41 36 chr1 235777481 235777996 -6886357 - L1MD1 LINE L1 0 6636 6125 2328 201 46 31 chr1 235777996 235778454 -6885899 + MLT1C LTR MaLR 3 467 0 2635 214 41 36 chr1 235778454 235778494 -6885859 - L1MD1 LINE L1 -511 6125 6087 1879 143 7 29 chr1 235778494 235778801 -6885552 - AluJb SINE Alu -11 301 2 2635 214 41 36 chr1 235778801 235778907 -6885446 - L1MD1 LINE L1 -549 6087 5971 4499 140 46 6 chr1 235778908 235779624 -6884729 + Tigger2 DNA MER2_type 1 745 -1973 611 141 74 0 chr1 235779689 235779810 -6884543 + Tigger2 DNA MER2_type 2461 2590 -128 369 255 20 0 chr1 235779810 235779908 -6884445 - L1MD1 LINE L1 -1552 4988 4889 383 198 123 0 chr1 235779916 235779997 -6884356 + Tigger2 DNA MER2_type 2574 2664 -54 1944 163 9 21 chr1 235779997 235780322 -6884031 - L1PA16 LINE L1 -15 6151 5831 624 221 20 80 chr1 235780322 235780521 -6883832 - L1MD1 LINE L1 -1755 4785 4599 7306 208 81 28 chr1 235780621 235782095 -6882258 - L1MD1 LINE L1 -4622 1918 328 2484 84 0 0 chr1 235782095 235782405 -6881948 - AluY SINE Alu -1 310 1 7306 208 81 28 chr1 235782405 235782735 -6881618 - L1MD1 LINE L1 -6212 328 17 892 242 33 5 chr1 235782735 235782946 -6881407 - MIR SINE MIR -45 217 1 244 246 16 0 chr1 235783498 235783559 -6880794 - MIR SINE MIR -93 115 54 3104 71 0 6 chr1 235784471 235784836 -6879517 + THE1B LTR MaLR 1 363 -1 279 93 0 0 chr1 235784957 235785000 -6879353 + (CA)n Simple_repeat Simple_repeat 1 43 0 347 269 69 41 chr1 235785458 235785603 -6878750 - MIR SINE MIR -93 169 21 352 316 0 11 chr1 235787930 235788025 -6876328 + MIR SINE MIR 46 139 -123 2334 86 16 0 chr1 235788806 235789109 -6875244 - AluSq SINE Alu -5 308 1 2105 117 27 27 chr1 235789234 235789603 -6874750 - Tigger3b DNA MER2_type -684 547 179 213 229 82 16 chr1 235790261 235790322 -6874031 - MIR SINE MIR -55 153 89 471 199 6 12 chr1 235790468 235790634 -6873719 + (CA)n Simple_repeat Simple_repeat 1 165 0 311 250 0 19 chr1 235790670 235790830 -6873523 + (CA)n Simple_repeat Simple_repeat 2 158 0 198 256 0 0 chr1 235790861 235790939 -6873414 + (CA)n Simple_repeat Simple_repeat 2 79 0 249 294 0 0 chr1 235791012 235791189 -6873164 + (CA)n Simple_repeat Simple_repeat 2 178 0 300 308 112 9 chr1 235792014 235792121 -6872232 + L2 LINE L2 3181 3298 -15 282 29 0 0 chr1 235792122 235792157 -6872196 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2451 84 3 0 chr1 235793446 235793756 -6870597 + AluSq SINE Alu 3 313 0 711 136 0 0 chr1 235794696 235794843 -6869510 + (TG)n Simple_repeat Simple_repeat 1 147 0 646 267 0 7 chr1 235796493 235796639 -6867714 - L2 LINE L2 -1 3312 3168 7524 116 23 5 chr1 235796664 235797844 -6866509 + Tigger1 DNA MER2_type 19 1219 -1199 6016 137 16 29 chr1 235797846 235798950 -6865403 + Tigger1 DNA MER2_type 1328 2417 -1 633 351 105 3 chr1 235799119 235799424 -6864929 - L2 LINE L2 -558 2756 2421 327 104 0 0 chr1 235799427 235799475 -6864878 + (T)n Simple_repeat Simple_repeat 1 48 0 1971 209 7 7 chr1 235799900 235800350 -6864003 - L1 LINE L1 -1857 4289 3840 491 208 80 8 chr1 235800400 235800525 -6863828 - MER21B LTR ERV1 -52 811 678 * 1726 185 44 28 chr1 235800520 235800910 -6863443 - MER21B LTR ERV1 -465 398 3 1016 218 8 0 chr1 235800916 235801150 -6863203 - L1 LINE L1 -2311 3835 3600 1717 204 85 55 chr1 235801152 235801739 -6862614 + MER63 DNA MER1_type 457 1061 0 2266 101 0 58 chr1 235802784 235803112 -6861241 - AluSp SINE Alu -2 311 3 29 0 0 0 chr1 235803847 235803876 -6860477 + AT_rich Low_complexity Low_complexity 1 29 0 842 213 0 0 chr1 235803877 235804027 -6860326 - FRAM SINE Alu -26 150 1 22 35 0 0 chr1 235804034 235804063 -6860290 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 235804113 235804142 -6860211 + AT_rich Low_complexity Low_complexity 1 29 0 2369 81 0 0 chr1 235804149 235804444 -6859909 + AluSg SINE Alu 1 295 -15 191 363 137 9 chr1 235804469 235804681 -6859672 + L2 LINE L2 2847 3085 -187 241 271 0 0 chr1 235804964 235805023 -6859330 - L2 LINE L2 -6 3266 3208 196 329 78 87 chr1 235806073 235806395 -6857958 + L2 LINE L2 2657 2975 -339 676 288 23 0 chr1 235808253 235808430 -6855923 + MIR SINE MIR 39 219 -43 1276 190 137 0 chr1 235811001 235811264 -6853089 + AluJb SINE Alu 2 300 -2 514 118 21 0 chr1 235811289 235811382 -6852971 + GA-rich Low_complexity Low_complexity 4 98 0 221 365 59 0 chr1 235812199 235812284 -6852069 + MIR SINE MIR 58 147 -61 2412 78 3 0 chr1 235813894 235814201 -6850152 - AluY SINE Alu -3 308 1 547 352 61 22 chr1 235814269 235814630 -6849723 + L3 LINE CR1 696 1070 -507 911 178 0 6 chr1 235814719 235814893 -6849460 + L1PA16 LINE L1 5970 6142 -24 353 257 262 15 chr1 235815277 235815483 -6848870 + MIR SINE MIR 5 261 -1 736 359 87 7 chr1 235816133 235816570 -6847783 + L3 LINE CR1 1099 1570 -7 335 119 0 17 chr1 235817989 235818048 -6846305 + (TA)n Simple_repeat Simple_repeat 1 58 0 182 289 92 0 chr1 235818459 235818535 -6845818 - L3b LINE CR1 -130 1453 1371 186 43 0 0 chr1 235819651 235819674 -6844679 + (CA)n Simple_repeat Simple_repeat 2 24 0 479 261 0 31 chr1 235819675 235819805 -6844548 + MER63 DNA MER1_type 2 753 -83 337 308 99 33 chr1 235820756 235820938 -6843415 - MIR SINE MIR -57 205 12 559 330 49 5 chr1 235820951 235821136 -6843217 + MIR SINE MIR 4 196 -66 203 111 48 16 chr1 235822663 235822726 -6841627 + (TA)n Simple_repeat Simple_repeat 1 65 0 181 242 16 65 chr1 235822841 235822853 -6841500 + L2 LINE L2 3213 3224 -48 3152 88 25 0 chr1 235822853 235823295 -6841058 - L1PA10 LINE L1 -6 6162 5710 181 242 16 65 chr1 235823295 235823344 -6841009 + L2 LINE L2 3224 3271 -1 829 299 140 12 chr1 235823451 235823873 -6840480 - MLT1J LTR MaLR 0 511 36 27 0 0 0 chr1 235824380 235824407 -6839946 + AT_rich Low_complexity Low_complexity 1 27 0 228 226 0 48 chr1 235824647 235824731 -6839622 + A-rich Low_complexity Low_complexity 1 80 0 285 253 143 0 chr1 235825131 235825222 -6839131 - MIR SINE MIR -73 189 86 271 322 138 0 chr1 235825235 235825387 -6838966 + MIR SINE MIR 56 228 -34 283 198 0 25 chr1 235825504 235825585 -6838768 + GA-rich Low_complexity Low_complexity 4 82 0 757 227 70 5 chr1 235825623 235825808 -6838545 - MIR SINE MIR -22 240 44 2124 139 10 0 chr1 235825832 235826135 -6838218 - AluSx SINE Alu -6 306 1 4146 149 28 50 chr1 235826684 235826942 -6837411 + L1MB3 LINE L1 5339 5601 -582 2381 77 0 0 chr1 235826942 235827239 -6837114 + AluY SINE Alu 1 297 -14 4146 149 28 50 chr1 235827239 235827843 -6836510 + L1MB3 LINE L1 5601 6182 -1 466 217 19 50 chr1 235828031 235828192 -6836161 + L1MC5 LINE L1 7751 7906 -55 314 219 209 0 chr1 235828461 235828566 -6835787 - MIR SINE MIR -119 143 17 222 239 43 0 chr1 235828783 235828829 -6835524 - L2 LINE L2 -18 3254 3207 3305 117 0 14 chr1 235828853 235829368 -6834985 + L1PA13 LINE L1 5651 6158 -5 402 288 63 40 chr1 235829368 235829590 -6834763 + Charlie8 DNA MER1_type 1860 2086 -331 1982 104 42 3 chr1 235829709 235829996 -6834357 + AluSc SINE Alu 1 298 -11 260 297 47 74 chr1 235830244 235830392 -6833961 + L2 LINE L2 3129 3272 0 300 245 128 20 chr1 235830498 235830600 -6833753 - L2 LINE L2 0 3313 3201 216 250 201 65 chr1 235830584 235830768 -6833585 + MIR SINE MIR 39 247 -15 * 303 326 85 16 chr1 235831237 235831366 -6832987 - MIR3 SINE MIR -67 141 4 950 205 5 29 chr1 235831993 235832203 -6832150 - MER3 DNA MER1_type 0 209 5 452 284 52 0 chr1 235832524 235832640 -6831713 + MIR3 SINE MIR 81 202 -6 459 346 19 35 chr1 235832989 235833254 -6831099 - MIR SINE MIR -1 261 7 798 189 0 0 chr1 235834591 235834723 -6829630 + FLAM_A SINE Alu 2 133 0 1912 149 0 17 chr1 235835100 235835401 -6828952 + AluJo SINE Alu 1 296 -16 302 278 157 36 chr1 235840602 235840825 -6823528 - L1M2 LINE L1 -6094 755 506 305 225 11 0 chr1 235841474 235841563 -6822790 + (TGGA)n Simple_repeat Simple_repeat 3 92 0 468 0 0 0 chr1 235841632 235841684 -6822669 + (TTA)n Simple_repeat Simple_repeat 3 54 0 419 303 69 0 chr1 235842489 235842634 -6821719 + L2 LINE L2 218 372 -2942 308 193 26 35 chr1 235842853 235842967 -6821386 + (TA)n Simple_repeat Simple_repeat 1 113 0 1006 269 157 32 chr1 235843031 235843440 -6820913 + L2 LINE L2 1865 2324 -990 244 272 117 19 chr1 235843452 235843555 -6820798 + L2 LINE L2 3201 3313 0 2028 115 47 0 chr1 235843608 235843886 -6820467 - AluSx SINE Alu -21 291 1 317 206 50 106 chr1 235843909 235844050 -6820303 - MIR SINE MIR -62 200 68 1722 285 63 26 chr1 235844050 235844636 -6819717 + MLT2E LTR ERVL 2 609 -19 207 291 23 47 chr1 235845012 235845098 -6819255 - MIR SINE MIR -154 108 25 824 266 13 4 chr1 235846106 235846335 -6818018 + L2 LINE L2 2466 2696 -618 1899 258 95 70 chr1 235846501 235847250 -6817103 + L1M4 LINE L1 2459 3187 -2959 1891 146 3 7 chr1 235847250 235847537 -6816816 + AluJb SINE Alu 1 286 -26 1899 258 95 70 chr1 235847537 235847622 -6816731 + L1M4 LINE L1 3187 3268 -2878 1965 142 0 3 chr1 235847622 235847904 -6816449 + AluSx SINE Alu 1 281 -31 252 0 0 0 chr1 235847907 235847935 -6816418 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1899 258 95 70 chr1 235847935 235848241 -6816112 + L1M4 LINE L1 3269 3566 -2580 1628 136 98 114 chr1 235848241 235848609 -6815744 - THE1B LTR MaLR -2 362 1 1899 258 95 70 chr1 235848609 235848818 -6815535 + L1M4 LINE L1 3566 3768 -2378 2212 126 0 7 chr1 235848818 235849128 -6815225 - AluSx SINE Alu -4 308 1 1899 258 95 70 chr1 235849128 235849336 -6815017 + L1M4 LINE L1 3768 3969 -2177 225 94 0 0 chr1 235849336 235849368 -6814985 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1899 258 95 70 chr1 235849368 235849677 -6814676 + L1M4 LINE L1 3969 4289 -1857 630 319 44 31 chr1 235849692 235850078 -6814275 - HERV16 LTR ERVL -3541 1455 1065 338 347 29 55 chr1 235850195 235850469 -6813884 - HERV16 LTR ERVL -3977 1019 753 280 350 95 46 chr1 235851897 235852266 -6812087 + L2 LINE L2 2288 2674 -640 388 287 8 54 chr1 235852288 235852317 -6812036 + MIR SINE MIR 7 36 -226 2181 64 0 0 chr1 235852317 235852584 -6811769 + AluY SINE Alu 1 267 -44 388 287 8 54 chr1 235852584 235852683 -6811670 + MIR SINE MIR 36 129 -133 206 278 69 0 chr1 235853304 235853376 -6810977 - MIR3 SINE MIR -21 187 111 1364 208 125 26 chr1 235853423 235853846 -6810507 - MLT1C LTR MaLR -2 465 1 337 324 117 50 chr1 235853945 235854167 -6810186 + MIR SINE MIR 24 260 -2 518 216 142 32 chr1 235854744 235854934 -6809419 + LTR16A LTR ERVL 7 217 -233 505 281 43 18 chr1 235855264 235855428 -6808925 - MIR SINE MIR -82 180 13 258 105 0 0 chr1 235855807 235855845 -6808508 + (TCC)n Simple_repeat Simple_repeat 2 39 0 450 288 79 6 chr1 235856042 235856219 -6808134 + MIR SINE MIR 71 260 -2 1666 247 40 4 chr1 235856853 235857306 -6807047 + L1ME3A LINE L1 5263 5731 -439 1073 165 41 10 chr1 235857307 235857501 -6806852 - MER20 DNA MER1_type -3 216 17 548 320 115 12 chr1 235857529 235857929 -6806424 + L1ME3A LINE L1 5722 6162 -8 1994 135 3 0 chr1 235857946 235858242 -6806111 + AluSx SINE Alu 1 297 -15 1257 251 59 63 chr1 235859084 235859488 -6804865 + MLT1H1 LTR MaLR 17 420 -135 2392 84 0 0 chr1 235859488 235859787 -6804566 + AluY SINE Alu 1 299 -12 1257 251 59 63 chr1 235859787 235859909 -6804444 + MLT1H1 LTR MaLR 420 541 -14 264 310 58 0 chr1 235859967 235860054 -6804299 - L2 LINE L2 -10 3262 3171 3206 84 0 5 chr1 235862268 235862708 -6801645 + HERVH LTR ERV1 3556 3993 -3720 4379 136 3 6 chr1 235862710 235863374 -6800979 + HERVH LTR ERV1 4488 5149 -2564 1358 148 19 0 chr1 235863375 235863591 -6800762 + HERVH LTR ERV1 5600 5819 -1894 2390 103 48 13 chr1 235863591 235863968 -6800385 + HERVH LTR ERV1 7324 7713 0 2859 80 120 2 chr1 235863968 235864369 -6799984 + LTR7 LTR ERV1 1 448 -2 224 209 0 30 chr1 235865095 235865162 -6799191 + GA-rich Low_complexity Low_complexity 4 68 0 340 281 89 58 chr1 235865506 235865730 -6798623 + MLT1J1 LTR MaLR 192 422 -24 383 371 116 4 chr1 235865791 235866058 -6798295 + L2 LINE L2 3004 3300 -13 287 209 58 4 chr1 235866397 235866482 -6797871 + MIR SINE MIR 53 141 -67 1815 138 25 21 chr1 235866495 235866659 -6797694 - MSTA LTR MaLR 0 428 261 2601 135 70 2 chr1 235866659 235867060 -6797293 - MSTA LTR MaLR 0 428 1 1815 138 25 21 chr1 235867060 235867178 -6797175 - MSTA LTR MaLR -167 261 145 198 0 0 0 chr1 235867545 235867567 -6796786 + (TG)n Simple_repeat Simple_repeat 1 22 0 792 242 222 20 chr1 235867687 235868106 -6796247 - MLT1H LTR MaLR 0 549 1 932 234 44 40 chr1 235868231 235868505 -6795848 - LTR16A1 LTR ERVL 0 457 183 27 0 0 0 chr1 235868784 235868811 -6795542 + AT_rich Low_complexity Low_complexity 1 27 0 7729 219 47 22 chr1 235869430 235871117 -6793236 + MLT1A1-int LTR MaLR 8 1735 0 1333 217 56 42 chr1 235871117 235871477 -6792876 + MLT1A1 LTR MaLR 1 365 0 254 275 11 55 chr1 235871982 235872073 -6792280 - MIR SINE MIR -6 256 170 2652 116 22 0 chr1 235873268 235873623 -6790730 + THE1B LTR MaLR 1 363 -1 413 289 55 69 chr1 235873745 235873974 -6790379 + MIR SINE MIR 12 256 -6 2245 205 46 48 chr1 235874398 235874658 -6789695 - MLT2B1 LTR ERVL 0 520 261 1837 134 19 8 chr1 235874658 235874926 -6789427 + AluSg SINE Alu 1 271 -39 2245 205 46 48 chr1 235874926 235875186 -6789167 - MLT2B1 LTR ERVL -259 261 1 25205 159 20 24 chr1 235875188 235879456 -6784897 - ERVL-B1 LTR ERVL -9 5755 1505 1063 189 17 0 chr1 235879448 235879623 -6784730 - ERVL LTR ERVL -3441 2323 2146 * 6751 181 23 40 chr1 235879626 235880911 -6783442 - ERVL LTR ERVL -4252 1512 249 462 150 8 92 chr1 235881156 235881261 -6783092 - MER67C LTR ERV1 -2 708 614 1360 130 125 14 chr1 235881261 235881650 -6782703 - LTR54B LTR ERV1 -2 496 1 * 3202 166 53 8 chr1 235881650 235882225 -6782128 - MER67C LTR ERV1 -97 613 13 4507 158 45 9 chr1 235882228 235883032 -6781321 - MER6 DNA MER2_type -1 864 32 249 227 0 0 chr1 235883768 235883812 -6780541 - MER6 DNA MER2_type -28 837 794 286 316 84 13 chr1 235883936 235884091 -6780262 - L2 LINE L2 -41 3272 3107 2144 138 3 0 chr1 235885459 235885771 -6778582 + AluSq SINE Alu 1 313 0 1212 201 104 36 chr1 235885975 235886284 -6778069 - MSTD LTR MaLR -2 394 65 180 338 0 15 chr1 235886288 235886356 -6777997 - MIR SINE MIR -125 137 71 319 118 78 0 chr1 235886546 235886597 -6777756 + MSTC LTR MaLR 1 55 -373 594 327 75 1 chr1 235886835 235887056 -6777297 + MIR SINE MIR 23 262 0 1700 219 112 43 chr1 235888082 235888219 -6776134 + MER92B LTR ERV1 36 162 -474 1921 178 28 3 chr1 235888219 235888573 -6775780 + MLT1A1 LTR MaLR 3 365 0 1700 219 112 43 chr1 235888573 235888848 -6775505 + MER92B LTR ERV1 162 500 -136 2231 122 0 10 chr1 235888848 235889159 -6775194 + AluSx SINE Alu 1 308 -4 1700 219 112 43 chr1 235889159 235889307 -6775046 + MER92B LTR ERV1 500 636 0 259 340 133 21 chr1 235889371 235889559 -6774794 - L2 LINE L2 0 3313 3105 688 154 15 29 chr1 235889559 235889695 -6774658 - Tigger7 DNA MER2_type 0 2487 2354 2449 84 6 0 chr1 235889731 235890042 -6774311 - AluSp SINE Alu 0 313 1 2125 190 18 27 chr1 235890042 235890378 -6773975 - Tigger7 DNA MER2_type -2044 443 110 1982 150 0 10 chr1 235890378 235890684 -6773669 - AluJb SINE Alu -9 303 1 2125 190 18 27 chr1 235890684 235890794 -6773559 - Tigger7 DNA MER2_type -2377 110 1 2876 108 21 16 chr1 235890876 235891302 -6773051 - MSTA LTR MaLR 0 428 1 1278 302 49 4 chr1 235891312 235891691 -6772662 - L2 LINE L2 -312 2960 2571 287 280 45 57 chr1 235891692 235891849 -6772504 - L2 LINE L2 -916 2398 2244 2172 91 0 14 chr1 235892099 235892417 -6771936 + AluSg SINE Alu 1 314 0 892 249 164 0 chr1 235892629 235892922 -6771431 + L2 LINE L2 2973 3313 0 23 0 0 0 chr1 235894688 235894711 -6769642 + AT_rich Low_complexity Low_complexity 1 23 0 416 328 63 6 chr1 235895895 235896069 -6768284 - MIR3 SINE MIR -6 202 19 396 149 237 9 chr1 235896114 235896228 -6768125 - MER104 DNA Tc2 -1 179 40 31 68 0 0 chr1 235896228 235896287 -6768066 + AT_rich Low_complexity Low_complexity 1 59 0 2401 100 0 0 chr1 235896362 235896673 -6767680 - AluSx SINE Alu -1 311 1 5323 153 39 11 chr1 235896877 235897926 -6766427 - L1MC2 LINE L1 -3 6341 5263 22 35 0 0 chr1 235898044 235898073 -6766280 + AT_rich Low_complexity Low_complexity 1 29 0 1078 301 127 8 chr1 235898418 235898820 -6765533 + L2 LINE L2 2831 3280 -33 2189 85 7 3 chr1 235899654 235900019 -6764334 - AluSp SINE Alu 0 366 1 261 359 29 0 chr1 235900129 235900232 -6764121 + MIR SINE MIR 35 140 -122 352 312 15 11 chr1 235900749 235900888 -6763465 - MIR SINE MIR -61 147 10 240 327 163 23 chr1 235900926 235901183 -6763170 + L3 LINE CR1 2 294 -1283 * 274 343 133 58 chr1 235901158 235901587 -6762766 - L2 LINE L2 -8 3264 2804 * 1036 301 53 135 chr1 235901573 235901620 -6762733 + L3 LINE CR1 203 252 -1325 2025 143 3 3 chr1 235901620 235901921 -6762432 - AluSx SINE Alu -11 301 1 1036 301 53 135 chr1 235901921 235902482 -6761871 + L3 LINE CR1 252 858 -719 2036 168 14 11 chr1 235902482 235902846 -6761507 + MLT1A1 LTR MaLR 1 365 0 1036 301 53 135 chr1 235902846 235903729 -6760624 + L3 LINE CR1 858 1572 -5 2285 85 3 20 chr1 235903778 235904084 -6760269 + AluSg SINE Alu 1 301 -9 1687 258 33 13 chr1 235905928 235906529 -6757824 - L1MEc LINE L1 -3257 2958 2346 305 289 54 40 chr1 235906800 235906949 -6757404 - L1MEc LINE L1 -5456 940 790 3620 82 0 104 chr1 235907638 235907761 -6756592 - MER41A LTR ERV1 0 554 420 1611 101 0 4 chr1 235907761 235907989 -6756364 + AluY SINE Alu 85 311 0 3620 82 0 104 chr1 235907989 235908483 -6755870 - MER41A LTR ERV1 -134 420 1 2134 109 11 0 chr1 235909707 235909992 -6754361 + AluSg SINE Alu 1 288 -22 330 324 19 47 chr1 235911096 235911309 -6753044 - MLT1I LTR MaLR -144 265 59 1061 306 76 2 chr1 235911375 235911823 -6752530 - L1MC4a LINE L1 -1897 5911 5431 2986 211 71 16 chr1 235911863 235912717 -6751636 - L1MB7 LINE L1 -11 6173 5271 2182 129 0 0 chr1 235912717 235913020 -6751333 - AluSx SINE Alu -9 303 1 2986 211 71 16 chr1 235913020 235913099 -6751254 - L1MB7 LINE L1 -913 5271 5198 1384 226 6 3 chr1 235913096 235913432 -6750921 - L1MB7 LINE L1 -1235 4911 4575 * 237 185 161 0 chr1 235913432 235913513 -6750840 - L1MC4a LINE L1 -2371 5437 5344 2559 121 33 14 chr1 235914278 235914700 -6749653 - MSTB1 LTR MaLR -2 430 1 1209 183 5 5 chr1 235915376 235915595 -6748758 + L1PB4 LINE L1 5931 6149 -7 3000 83 7 2 chr1 235916093 235916503 -6747850 + L1PA7 LINE L1 5743 6154 0 191 35 0 35 chr1 235916511 235916540 -6747813 + (TA)n Simple_repeat Simple_repeat 2 29 0 236 333 32 0 chr1 235916623 235916686 -6747667 - L3 LINE CR1 -9 1568 1504 797 292 48 71 chr1 235916794 235917233 -6747120 - L3 LINE CR1 -142 1435 1007 412 186 27 48 chr1 235917272 235917394 -6746959 + MLT1J2 LTR MaLR 335 446 0 2110 68 0 0 chr1 235917526 235917806 -6746547 + L1PA7 LINE L1 5743 6022 -132 390 274 67 23 chr1 235917822 235917985 -6746368 + MIR SINE MIR 20 198 -58 504 266 34 28 chr1 235918163 235918340 -6746013 + MER5B DNA MER1_type 1 178 0 491 156 25 74 chr1 235918394 235918516 -6745837 - MLT1J2 LTR MaLR 0 450 335 354 82 0 0 chr1 235918584 235918633 -6745720 - MLT2C2 LTR ERVL 0 464 416 223 164 0 98 chr1 235918633 235918694 -6745659 + (TG)n Simple_repeat Simple_repeat 2 56 0 1456 228 32 13 chr1 235918702 235919077 -6745276 - MLT2D LTR ERVL -20 534 1 515 272 58 0 chr1 235919085 235919258 -6745095 - MLT1J2 LTR MaLR -267 183 1 1042 122 6 11 chr1 235919388 235919489 -6744864 + (TTCC)n Simple_repeat Simple_repeat 1 280 0 1042 122 6 11 chr1 235919489 235919670 -6744683 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 725 196 0 7 chr1 235919704 235919842 -6744511 - FRAM SINE Alu -39 137 1 681 256 48 24 chr1 235920130 235920298 -6744055 - MER5B DNA MER1_type -5 173 2 2126 134 48 28 chr1 235921095 235921452 -6742901 - THE1B LTR MaLR 0 364 1 640 170 14 127 chr1 235921642 235921719 -6742634 + MER5A DNA MER1_type 1 85 -104 1662 115 0 21 chr1 235921719 235921953 -6742400 + AluSg/x SINE Alu 72 300 -10 640 170 14 127 chr1 235921953 235922087 -6742266 + MER5A DNA MER1_type 85 188 -1 198 191 0 0 chr1 235922515 235922562 -6741791 + (CA)n Simple_repeat Simple_repeat 2 48 0 1425 196 15 74 chr1 235923197 235923590 -6740763 - MLT1A2 LTR MaLR -4 370 1 441 265 154 0 chr1 235923635 235923797 -6740556 - MLT1K LTR MaLR -77 511 325 2093 123 0 7 chr1 235924121 235924431 -6739922 - AluSg SINE Alu -2 308 1 469 344 37 30 chr1 235924546 235924950 -6739403 + L1ME LINE L1 20 426 -5644 1240 276 60 65 chr1 235925237 235926357 -6737996 + L1ME LINE L1 526 1679 -4582 1746 172 0 4 chr1 235926357 235926630 -6737723 + AluJb SINE Alu 2 273 -39 1240 276 60 65 chr1 235926630 235926907 -6737446 + L1ME LINE L1 1679 1956 -4305 234 329 35 0 chr1 235927703 235927788 -6736565 + MIR3 SINE MIR 89 176 -32 700 233 92 0 chr1 235927930 235928093 -6736260 - MER45A DNA AcHobo 0 178 1 200 218 50 20 chr1 235928289 235928390 -6735963 + (TTAA)n Simple_repeat Simple_repeat 2 105 0 1914 100 4 8 chr1 235929159 235929418 -6734935 - AluSx SINE Alu -54 258 1 181 323 94 10 chr1 235929619 235929715 -6734638 - L3 LINE CR1 -106 1471 1368 943 198 0 17 chr1 235929972 235930144 -6734209 + AluSg SINE Alu 1 169 -141 558 270 103 23 chr1 235930556 235930772 -6733581 - MIR SINE MIR -32 230 2 457 297 17 0 chr1 235931306 235931424 -6732929 - MIR3 SINE MIR -10 198 79 364 220 22 11 chr1 235931572 235931663 -6732690 + MLT1I LTR MaLR 318 409 0 260 283 52 79 chr1 235931668 235931997 -6732356 - L1M4 LINE L1 -2239 3907 3588 507 320 6 23 chr1 235932029 235932201 -6732152 - L2 LINE L2 -447 2867 2699 2102 129 31 0 chr1 235932203 235932529 -6731824 - MER7A DNA MER2_type 0 346 13 448 332 51 60 chr1 235932529 235932845 -6731508 - L2 LINE L2 -621 2693 2381 2595 36 7 0 chr1 235933042 235933344 -6731009 - AluY SINE Alu -7 304 1 332 285 39 39 chr1 235933510 235933689 -6730664 + MER90 LTR ERV1 419 597 -17 979 234 23 78 chr1 235933791 235934182 -6730171 + MLT2B1 LTR ERVL 1 465 -55 207 0 0 0 chr1 235934182 235934205 -6730148 + (TC)n Simple_repeat Simple_repeat 2 24 0 979 234 23 78 chr1 235934205 235934222 -6730131 + MLT2B1 LTR ERVL 465 481 -39 27 0 0 0 chr1 235934222 235934249 -6730104 + AT_rich Low_complexity Low_complexity 1 27 0 267 190 13 25 chr1 235934266 235934345 -6730008 + (TA)n Simple_repeat Simple_repeat 2 79 0 314 138 69 0 chr1 235934348 235934406 -6729947 + MLT2B1 LTR ERVL 459 520 0 413 294 39 39 chr1 235935700 235935880 -6728473 - MLT1J LTR MaLR -106 405 226 2668 99 3 6 chr1 235936468 235936833 -6727520 + THE1B LTR MaLR 1 364 0 508 284 19 19 chr1 235937696 235937851 -6726502 - MIR SINE MIR -95 167 13 363 44 0 0 chr1 235938994 235939039 -6725314 + (TG)n Simple_repeat Simple_repeat 1 45 0 5201 26 0 12 chr1 235940147 235940725 -6723628 + SVA Other Other 816 1386 0 598 217 31 0 chr1 235940857 235940986 -6723367 - FLAM_A SINE Alu 0 133 1 37 0 0 0 chr1 235941038 235941075 -6723278 + AT_rich Low_complexity Low_complexity 1 37 0 680 234 118 80 chr1 235941792 235942306 -6722047 + L2 LINE L2 2664 3313 0 266 293 88 40 chr1 235942445 235942590 -6721763 + MIR SINE MIR 7 151 -57 2494 86 0 0 chr1 235943175 235943479 -6720874 + AluSx SINE Alu 1 304 -8 2410 118 31 14 chr1 235944110 235944467 -6719886 + THE1B LTR MaLR 2 364 0 337 277 65 26 chr1 235944682 235944837 -6719516 + MER103 DNA DNA 4 164 -2 1303 144 54 50 chr1 235944862 235944936 -6719417 - L1MC2 LINE L1 -5 6339 6267 2259 110 3 7 chr1 235944936 235945245 -6719108 - AluSx SINE Alu -4 308 1 1303 144 54 50 chr1 235945245 235945468 -6718885 - L1MC2 LINE L1 -77 6267 6041 191 354 31 10 chr1 235945584 235945680 -6718673 - MIR SINE MIR -66 142 45 354 45 0 0 chr1 235945972 235946016 -6718337 + (CA)n Simple_repeat Simple_repeat 2 45 0 1722 179 7 0 chr1 235947240 235947520 -6716833 - AluJo SINE Alu -26 286 5 249 252 23 46 chr1 235947574 235947705 -6716648 - L1MC5 LINE L1 -44 7917 7790 1386 260 63 8 chr1 235947728 235948255 -6716098 - L1MB8 LINE L1 -7 6171 5616 836 189 39 4 chr1 235949162 235949446 -6714907 + MER52A LTR ERV1 383 594 -684 29546 110 15 54 chr1 235949447 235955847 -6708506 - L1PA7 LINE L1 -5 6149 12 615 164 15 52 chr1 235955856 235955990 -6708363 - L1P5 LINE L1 -371 5785 5657 21 36 0 0 chr1 235956200 235956228 -6708125 + AT_rich Low_complexity Low_complexity 1 28 0 328 323 6 56 chr1 235956724 235956907 -6707446 - MIR SINE MIR -56 206 34 2803 163 36 8 chr1 235957503 235958030 -6706323 + MER34 LTR ERV1 1 542 0 2689 75 120 2 chr1 235958348 235958749 -6705604 + LTR7 LTR ERV1 1 448 -2 4620 91 1 0 chr1 235958751 235959414 -6704939 + HERVH LTR ERV1 1 664 -7049 1209 118 6 0 chr1 235959516 235959685 -6704668 + AluSq SINE Alu 121 290 -23 24 32 0 0 chr1 235959685 235959716 -6704637 + AT_rich Low_complexity Low_complexity 1 31 0 1804 218 22 60 chr1 235959716 235960066 -6704287 + L1M4 LINE L1 4643 4960 -1186 2395 75 0 7 chr1 235960066 235960371 -6703982 + AluY SINE Alu 1 303 -8 1804 218 22 60 chr1 235960371 235960657 -6703696 + L1M4 LINE L1 4960 5255 -891 669 269 79 44 chr1 235960693 235960754 -6703599 + L1MEc LINE L1 1564 1621 -4775 1779 146 7 62 chr1 235960754 235961063 -6703290 + AluJb SINE Alu 1 292 -20 669 269 79 44 chr1 235961063 235961407 -6702946 + L1MEc LINE L1 1621 1983 -4413 832 265 78 19 chr1 235961500 235962255 -6702098 + L1MEc LINE L1 1996 2766 -3449 2685 137 15 23 chr1 235962257 235962730 -6701623 - L1PA13 LINE L1 0 6163 5695 1038 104 0 0 chr1 235962830 235962965 -6701388 + AluSg/x SINE Alu 172 306 -4 940 274 48 0 chr1 235963552 235963800 -6700553 + MER82 DNA MER2_type 394 653 0 303 355 134 19 chr1 235963800 235964062 -6700291 - L1ME LINE L1 -536 5585 5294 248 128 0 21 chr1 235964327 235964374 -6699979 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 982 88 0 0 chr1 235964726 235964851 -6699502 + AluSg/x SINE Alu 173 297 -15 1868 89 4 0 chr1 235965376 235965613 -6698740 - AluSg SINE Alu -15 295 58 497 212 21 95 chr1 235966195 235966384 -6697969 + MER5B DNA MER1_type 1 175 -3 2599 220 65 44 chr1 235967287 235967623 -6696730 - L1MC4a LINE L1 0 7808 7481 849 196 25 0 chr1 235967623 235967786 -6696567 - FAM SINE Alu -8 167 1 2599 220 65 44 chr1 235967786 235968444 -6695909 - L1MC4a LINE L1 -327 7481 6793 1863 188 28 86 chr1 235968778 235969348 -6695005 - LTR55 LTR ERV -11 537 1 209 353 76 17 chr1 235969688 235969807 -6694546 + MIR SINE MIR 53 178 -84 269 380 0 9 chr1 235969981 235970089 -6694264 + L2 LINE L2 3187 3293 -20 674 122 43 0 chr1 235970132 235970247 -6694106 + L1MB1 LINE L1 6035 6154 -14 2430 54 0 7 chr1 235970686 235970984 -6693369 + AluY SINE Alu 3 298 -13 180 0 0 0 chr1 235971415 235971435 -6692918 + (A)n Simple_repeat Simple_repeat 1 20 0 217 127 0 48 chr1 235974318 235974381 -6689972 + (CCA)n Simple_repeat Simple_repeat 3 62 0 203 167 33 33 chr1 235974862 235974922 -6689431 + CT-rich Low_complexity Low_complexity 3 62 0 701 128 40 16 chr1 235975289 235975414 -6688939 + THE1B LTR MaLR 1 128 -236 224 373 96 0 chr1 235975760 235975937 -6688416 - MIR SINE MIR -20 242 49 1558 161 0 39 chr1 235975951 235976236 -6688117 - AluJb SINE Alu -13 299 26 201 74 0 0 chr1 235977181 235977208 -6687145 + (TATG)n Simple_repeat Simple_repeat 4 30 0 1093 139 30 30 chr1 235977707 235977909 -6686444 - MER20 DNA MER1_type -4 215 14 1704 171 0 14 chr1 235979062 235979337 -6685016 - AluJb SINE Alu -8 304 34 228 182 0 0 chr1 235979478 235979522 -6684831 + (CA)n Simple_repeat Simple_repeat 1 44 0 24 32 0 0 chr1 235979771 235979802 -6684551 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr1 235979932 235979975 -6684378 + AT_rich Low_complexity Low_complexity 1 43 0 432 0 0 0 chr1 235980847 235980895 -6683458 + (TA)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr1 235982770 235982793 -6681560 + (GA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr1 235983502 235983534 -6680819 + AT_rich Low_complexity Low_complexity 1 32 0 472 244 49 32 chr1 235983659 235983782 -6680571 + L2 LINE L2 3188 3312 -1 2140 110 14 0 chr1 235985528 235985820 -6678533 + AluSq SINE Alu 1 296 -17 1903 114 222 6 chr1 235986416 235986768 -6677585 - MSTA LTR MaLR 0 428 1 315 0 0 0 chr1 235986865 235986900 -6677453 + (TG)n Simple_repeat Simple_repeat 2 36 0 437 322 33 25 chr1 235987137 235987382 -6676971 - L3b LINE CR1 -232 1351 1105 646 311 0 12 chr1 235987547 235987708 -6676645 - MER5B DNA MER1_type -16 162 4 834 209 111 90 chr1 235987958 235988346 -6676007 + MSTD LTR MaLR 1 396 0 499 336 183 38 chr1 235988381 235989390 -6674963 + L2 LINE L2 1812 2967 -347 275 338 0 0 chr1 235989463 235989537 -6674816 + L2 LINE L2 3235 3308 -5 310 356 58 0 chr1 235989663 235989767 -6674586 + L2 LINE L2 3136 3245 -27 586 241 235 0 chr1 235990132 235990302 -6674051 + MIR SINE MIR 32 241 -21 266 352 49 21 chr1 235990712 235990854 -6673499 - MIR3 SINE MIR 0 208 63 1959 162 0 7 chr1 235991417 235991726 -6672627 - AluJb SINE Alu -4 308 2 553 310 92 14 chr1 235991832 235992180 -6672173 + LTR16A LTR ERVL 51 438 -12 263 333 56 26 chr1 235992438 235992633 -6671720 + MLT1K LTR MaLR 114 314 -274 687 302 106 17 chr1 235992783 235993131 -6671222 - L3 LINE CR1 -878 699 321 190 146 73 0 chr1 235993175 235993216 -6671137 - L3 LINE CR1 -686 891 848 210 291 60 77 chr1 235993294 235993411 -6670942 + MIR3 SINE MIR 14 128 -80 1811 152 0 26 chr1 235993781 235994083 -6670270 - AluJb SINE Alu -18 294 1 2176 115 3 7 chr1 235994244 235994549 -6669804 - AluSq SINE Alu -9 304 1 262 298 24 0 chr1 236046186 236046270 -6618083 + MER94 DNA DNA 49 134 0 2270 142 9 0 chr1 236046408 236046753 -6617600 + MER7A DNA MER2_type 1 346 0 1013 271 32 0 chr1 236047512 236047763 -6616590 - MIR SINE MIR -1 261 3 223 15 0 138 chr1 236048356 236048421 -6615932 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 209 316 191 7 chr1 236048648 236048784 -6615569 - MIR SINE MIR -82 180 20 1484 201 0 7 chr1 236048824 236049097 -6615256 + AluJo SINE Alu 1 271 -41 486 49 0 0 chr1 236049111 236049172 -6615181 + (CA)n Simple_repeat Simple_repeat 2 62 0 325 264 0 91 chr1 236049260 236049370 -6614983 - L1MC5 LINE L1 -66 7895 7796 2259 159 174 148 chr1 236049506 236050051 -6614302 + L1MD3 LINE L1 6727 7423 -572 353 333 58 0 chr1 236050051 236050171 -6614182 + MLT1F1 LTR MaLR 5 131 -436 2259 159 174 148 chr1 236050171 236050423 -6613930 + L1MD3 LINE L1 7423 7667 -328 1659 192 15 15 chr1 236050427 236050755 -6613598 + MLT1A1 LTR MaLR 38 365 0 1456 153 29 55 chr1 236050761 236051068 -6613285 + L1MD3 LINE L1 7680 7978 -17 230 270 183 0 chr1 236052098 236052224 -6612129 - L1ME4a LINE L1 -2 6119 5971 255 61 0 0 chr1 236052242 236052275 -6612078 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr1 236052420 236052441 -6611912 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 236052612 236052644 -6611709 + AT_rich Low_complexity Low_complexity 1 32 0 733 184 41 7 chr1 236055105 236055252 -6609101 + MER104 DNA Tc2 29 180 0 2793 102 56 0 chr1 236055560 236055990 -6608363 + L1PA10 LINE L1 5709 6162 -6 2479 65 0 0 chr1 236055990 236056282 -6608071 - AluSc SINE Alu -17 292 1 295 209 45 9 chr1 236057039 236057149 -6607204 + (TA)n Simple_repeat Simple_repeat 2 115 0 245 251 53 116 chr1 236057215 236057422 -6606931 + L2 LINE L2 3120 3313 0 23 33 0 0 chr1 236057705 236057735 -6606618 + AT_rich Low_complexity Low_complexity 1 30 0 465 330 89 4 chr1 236060423 236060659 -6603694 - L1M4 LINE L1 -3681 2465 2210 465 244 16 16 chr1 236060726 236060853 -6603500 - MIR SINE MIR -23 239 113 391 261 83 26 chr1 236061482 236061712 -6602641 + HAL1 LINE L1 1096 1338 -1169 2288 264 96 35 chr1 236061725 236062753 -6601600 + HAL1 LINE L1 1405 2495 -12 585 313 152 34 chr1 236062818 236063371 -6600982 + L2 LINE L2 1541 2158 -1156 614 277 86 76 chr1 236063692 236064111 -6600242 + L2 LINE L2 2155 2577 -737 359 301 165 0 chr1 236064208 236064341 -6600012 - L2 LINE L2 -230 3083 2929 2775 118 23 5 chr1 236065114 236065545 -6598808 + L1PA13 LINE L1 5723 6161 -2 462 311 66 93 chr1 236066448 236066963 -6597390 + L1MEd LINE L1 593 1093 -5026 348 276 182 35 chr1 236067063 236067491 -6596862 + L1MEd LINE L1 2147 2637 -3492 2202 111 6 16 chr1 236067686 236068001 -6596352 + AluSx SINE Alu 1 312 0 817 254 77 98 chr1 236068021 236068461 -6595892 + L1ME3A LINE L1 5650 6080 -90 305 303 91 73 chr1 236068568 236068908 -6595445 + L1MC4a LINE L1 5830 6175 -1633 26 50 0 0 chr1 236070085 236070125 -6594228 + AT_rich Low_complexity Low_complexity 1 40 0 880 307 154 18 chr1 236071072 236071863 -6592490 - L2 LINE L2 0 3313 2411 896 310 70 29 chr1 236071950 236072366 -6591987 + L2 LINE L2 2418 2850 -464 2069 173 19 21 chr1 236074982 236075032 -6589321 - LTR31 LTR ERV1 -15 604 555 2351 130 34 3 chr1 236075032 236075385 -6588968 - THE1B LTR MaLR 0 364 1 2069 173 19 21 chr1 236075385 236075710 -6588643 - LTR31 LTR ERV1 -64 555 230 327 230 26 141 chr1 236075811 236076002 -6588351 - LTR31 LTR ERV1 -386 233 65 325 292 0 21 chr1 236076444 236076540 -6587813 + L1ME LINE L1 5513 5606 -515 1994 145 0 3 chr1 236076551 236076841 -6587512 + AluSx SINE Alu 1 289 -23 1695 188 10 0 chr1 236078236 236078529 -6585824 + AluJo SINE Alu 5 300 -12 468 318 4 54 chr1 236080914 236081153 -6583200 - L1ME LINE L1 -369 5801 5575 358 123 231 0 chr1 236081716 236081781 -6582572 - MADE1 DNA Mariner 0 80 1 692 309 21 13 chr1 236081845 236082081 -6582272 - MLT1G1 LTR MaLR -357 238 1 23 0 0 0 chr1 236082292 236082315 -6582038 + AT_rich Low_complexity Low_complexity 1 23 0 206 393 51 8 chr1 236082424 236082541 -6581812 + L2 LINE L2 3137 3258 -14 330 302 0 0 chr1 236082588 236082674 -6581679 - L2 LINE L2 0 3313 3228 1931 142 25 81 chr1 236082756 236083164 -6581189 - MLT1B LTR MaLR 0 390 6 298 373 59 25 chr1 236083205 236083409 -6580944 - L2 LINE L2 -243 3070 2860 184 200 0 50 chr1 236083395 236083435 -6580918 - L2 LINE L2 -579 2735 2698 * 615 338 136 19 chr1 236084012 236084637 -6579716 - L2 LINE L2 -619 2695 1942 441 263 19 110 chr1 236084722 236085132 -6579221 + L1ME3 LINE L1 5023 5395 -751 467 35 0 0 chr1 236085132 236085189 -6579164 + AluY SINE Alu 240 296 -14 546 283 114 61 chr1 236085190 236085678 -6578675 + L1ME3 LINE L1 5392 5911 -251 189 0 0 0 chr1 236085678 236085699 -6578654 + (CA)n Simple_repeat Simple_repeat 2 22 0 546 283 114 61 chr1 236085699 236085737 -6578616 + L1ME3 LINE L1 5911 5946 -216 931 128 0 0 chr1 236085738 236085863 -6578490 + FLAM_C SINE Alu 1 125 -18 315 293 33 93 chr1 236085957 236086172 -6578181 + L1ME3 LINE L1 5961 6162 0 26 0 0 0 chr1 236086386 236086412 -6577941 + AT_rich Low_complexity Low_complexity 1 26 0 1030 184 179 4 chr1 236086517 236086751 -6577602 + AluSx SINE Alu 2 276 -36 892 55 16 8 chr1 236086751 236086878 -6577475 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 965 183 179 14 chr1 236087628 236087918 -6576435 + MER46C DNA MER2_type 1 338 0 246 298 105 58 chr1 236088119 236088290 -6576063 + MIR3 SINE MIR 21 199 -9 279 213 0 0 chr1 236089399 236089460 -6574893 - MER5A DNA MER1_type -84 105 45 189 94 0 0 chr1 236089675 236089707 -6574646 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 240 35 0 0 chr1 236089706 236089735 -6574618 + (GA)n Simple_repeat Simple_repeat 1 29 0 1849 150 7 7 chr1 236090936 236091223 -6573130 + AluJb SINE Alu 1 287 -25 27 0 0 0 chr1 236091223 236091250 -6573103 + AT_rich Low_complexity Low_complexity 1 27 0 597 158 44 94 chr1 236091589 236091755 -6572598 + ORSL DNA AcHobo 7 180 -95 591 53 0 0 chr1 236091755 236091830 -6572523 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 1565 164 40 18 chr1 236091831 236092106 -6572247 - AluSx SINE Alu -31 281 1 597 158 44 94 chr1 236092106 236092140 -6572213 + ORSL DNA AcHobo 179 199 -76 1881 135 0 43 chr1 236092274 236092578 -6571775 + AluSx SINE Alu 6 296 -16 204 125 0 0 chr1 236092725 236092757 -6571596 + (CA)n Simple_repeat Simple_repeat 2 33 0 1675 169 13 33 chr1 236093388 236093695 -6570658 + AluJb SINE Alu 1 301 -11 1367 205 15 11 chr1 236093729 236094002 -6570351 - AluJo SINE Alu -24 288 15 2129 82 0 38 chr1 236094179 236094501 -6569852 + AluSg SINE Alu 1 311 0 633 197 122 7 chr1 236095263 236095410 -6568943 + FRAM SINE Alu 1 164 -2 767 286 119 13 chr1 236095510 236095737 -6568616 - MIR SINE MIR -2 260 10 324 277 18 27 chr1 236096176 236096288 -6568065 + MER103 DNA DNA 8 118 -48 698 218 99 68 chr1 236096313 236096412 -6567941 - MER33 DNA MER1_type -2283 302 208 2069 106 46 0 chr1 236096412 236096696 -6567657 + AluSq SINE Alu 1 297 -16 698 218 99 68 chr1 236096696 236096889 -6567464 - MER33 DNA MER1_type -2377 208 1 22 56 0 0 chr1 236097012 236097048 -6567305 + AT_rich Low_complexity Low_complexity 1 36 0 295 141 47 0 chr1 236097327 236097391 -6566962 - L1MA10 LINE L1 -14 6320 6254 384 271 41 16 chr1 236097409 236097531 -6566822 + MIR3 SINE MIR 83 207 -1 1739 169 4 0 chr1 236100143 236100421 -6563932 + AluJo SINE Alu 3 281 -31 855 29 0 0 chr1 236100422 236100524 -6563829 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 348 24 0 0 chr1 236100637 236100678 -6563675 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 216 0 0 0 chr1 236100681 236100705 -6563648 + (GGGAA)n Simple_repeat Simple_repeat 1 24 0 229 263 20 0 chr1 236102300 236102399 -6561954 + (TA)n Simple_repeat Simple_repeat 1 101 0 317 299 123 31 chr1 236102909 236103170 -6561183 + L3b LINE CR1 1150 1434 -149 1595 172 21 31 chr1 236103174 236103464 -6560889 + AluJo SINE Alu 5 291 -21 2227 110 0 3 chr1 236103654 236103955 -6560398 + AluSx SINE Alu 1 300 -12 377 274 0 10 chr1 236104760 236104862 -6559491 + MIR SINE MIR 137 237 -25 2089 174 0 8 chr1 236104923 236105291 -6559062 - MLT1A1 LTR MaLR 0 365 1 317 246 185 8 chr1 236105322 236105452 -6558901 + MIR SINE MIR 107 259 -3 489 183 10 0 chr1 236105675 236105779 -6558574 - L1MA8 LINE L1 -191 6100 5996 683 209 8 0 chr1 236106600 236106729 -6557624 + MER2 DNA MER2_type 1 130 -215 5244 147 34 9 chr1 236106756 236107709 -6556644 - L1MA3 LINE L1 0 6305 5330 28 0 0 0 chr1 236107709 236107737 -6556616 + AT_rich Low_complexity Low_complexity 1 28 0 10959 157 21 40 chr1 236107744 236109597 -6554756 - L1MA3 LINE L1 -784 5362 3560 2293 101 0 0 chr1 236109597 236109895 -6554458 - AluSc SINE Alu -9 300 3 10959 157 21 40 chr1 236109895 236110323 -6554030 - L1MA3 LINE L1 -2586 3560 3125 2812 148 21 0 chr1 236110383 236110850 -6553503 - L1PB3 LINE L1 -3 6151 5675 711 153 23 8 chr1 236110888 236111019 -6553334 - AluJb SINE Alu -179 133 1 12830 208 36 17 chr1 236111019 236116480 -6547873 - L1PBa LINE L1 -1005 5844 1178 2162 141 36 30 chr1 236116480 236116842 -6547511 - THE1B LTR MaLR 0 364 1 12830 208 36 17 chr1 236116842 236117995 -6546358 - L1PBa LINE L1 -5671 1178 48 235 186 0 68 chr1 236118038 236118097 -6546256 - L1PBa LINE L1 -6792 57 3 11642 186 21 26 chr1 236118099 236121336 -6543017 - L1 LINE L1 -3019 4087 202 410 93 0 70 chr1 236121344 236121430 -6542923 + MER2 DNA MER2_type 130 209 -136 23 0 0 0 chr1 236121614 236121637 -6542716 + AT_rich Low_complexity Low_complexity 1 23 0 2086 63 0 0 chr1 236121714 236121985 -6542368 - L1PA5 LINE L1 0 6154 5884 1751 39 0 0 chr1 236121985 236122192 -6542161 + L1P2 LINE L1 5394 5600 -554 2060 121 0 10 chr1 236122678 236122967 -6541386 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr1 236122967 236122994 -6541359 + AT_rich Low_complexity Low_complexity 1 27 0 226 214 54 0 chr1 236122994 236123050 -6541303 + MIR SINE MIR 138 196 -66 24 0 0 0 chr1 236123181 236123205 -6541148 + AT_rich Low_complexity Low_complexity 1 24 0 2060 143 13 0 chr1 236123210 236123517 -6540836 + AluSx SINE Alu 1 311 -1 2195 124 0 3 chr1 236123926 236124232 -6540121 - AluJb SINE Alu -5 307 3 204 240 0 0 chr1 236124360 236124410 -6539943 + T-rich Low_complexity Low_complexity 1 50 0 1938 127 7 16 chr1 236124805 236125112 -6539241 - MER1B DNA MER1_type 0 339 36 2011 94 58 4 chr1 236125201 236125477 -6538876 - AluSx SINE Alu -20 292 2 515 289 53 34 chr1 236125771 236125979 -6538374 + MIR SINE MIR 47 258 -4 276 30 0 0 chr1 236126055 236126088 -6538265 + (T)n Simple_repeat Simple_repeat 1 33 0 273 209 149 0 chr1 236127157 236127224 -6537129 + L3b LINE CR1 1276 1352 -231 284 294 139 44 chr1 236128464 236128644 -6535709 - L2 LINE L2 -2 3270 3074 674 62 45 0 chr1 236130441 236130553 -6533800 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 1331 165 109 4 chr1 236130561 236130809 -6533544 - AluSx SINE Alu -38 274 1 1645 151 84 25 chr1 236131259 236131616 -6532737 - MER34B LTR ERV1 0 565 188 306 313 23 47 chr1 236132727 236132855 -6531498 - L2 LINE L2 0 3272 3148 486 295 26 32 chr1 236133089 236133245 -6531108 + MLT1J2 LTR MaLR 277 431 -19 188 33 0 33 chr1 236133393 236133423 -6530930 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 29 70 0 0 chr1 236133492 236133549 -6530804 + AT_rich Low_complexity Low_complexity 1 57 0 371 253 182 19 chr1 236133727 236133881 -6530472 + MER5A DNA MER1_type 10 188 -1 1591 163 7 24 chr1 236134569 236134864 -6529489 - AluJo SINE Alu -22 290 1 394 292 107 43 chr1 236134964 236135197 -6529156 + MIR SINE MIR 13 260 -2 223 337 122 35 chr1 236135831 236136003 -6528350 + MIR3 SINE MIR 13 199 -9 23 33 0 0 chr1 236136781 236136811 -6527542 + AT_rich Low_complexity Low_complexity 1 30 0 326 67 0 0 chr1 236136976 236137021 -6527332 - MADE1 DNA Mariner 0 80 36 336 78 3 0 chr1 236137228 236137280 -6527073 + MADE1 DNA Mariner 36 80 0 272 307 0 27 chr1 236137423 236137498 -6526855 + MIR SINE MIR 31 103 -105 491 330 133 45 chr1 236138512 236139157 -6525196 - L2 LINE L2 -4 3268 2681 2215 94 7 11 chr1 236139157 236139495 -6524858 + AluSq SINE Alu 1 337 0 491 330 133 45 chr1 236139495 236140140 -6524213 - L2 LINE L2 -591 2681 1853 852 177 93 153 chr1 236140210 236140598 -6523755 - MLT1A2 LTR MaLR -54 337 1 1927 128 4 4 chr1 236142517 236142820 -6521533 + AluJo SINE Alu 10 312 0 242 212 106 0 chr1 236143262 236143328 -6521025 - L2 LINE L2 -18 3254 3182 26 0 0 0 chr1 236143627 236143653 -6520700 + AT_rich Low_complexity Low_complexity 1 26 0 517 321 76 21 chr1 236143759 236143996 -6520357 - L2 LINE L2 -620 2694 2445 2071 123 0 3 chr1 236143996 236144333 -6520020 + AluSq SINE Alu 1 336 0 273 308 13 0 chr1 236144571 236144649 -6519704 + MIR SINE MIR 37 115 -93 181 271 42 0 chr1 236144831 236144879 -6519474 + L2 LINE L2 3221 3270 -2 2069 125 4 0 chr1 236144967 236145246 -6519107 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr1 236145249 236145272 -6519081 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 838 147 38 4 chr1 236145283 236145553 -6518800 + GA-rich Low_complexity Low_complexity 1 279 0 394 237 139 51 chr1 236146065 236146280 -6518073 - L2 LINE L2 0 3313 3080 308 143 83 48 chr1 236147682 236147766 -6516587 - Charlie2 DNA MER1_type -32 2830 2744 189 176 73 103 chr1 236147921 236147989 -6516364 + L2 LINE L2 2903 2968 -345 431 281 63 91 chr1 236147995 236148248 -6516105 - L2 LINE L2 -108 3164 2919 214 306 24 24 chr1 236148335 236148420 -6515933 - L2 LINE L2 -4 3268 3184 382 255 0 57 chr1 236148560 236148701 -6515652 + MIR SINE MIR 71 203 -59 200 388 10 0 chr1 236149286 236149384 -6514969 - L2 LINE L2 -309 2963 2865 3222 136 24 3 chr1 236150203 236150751 -6513602 + LTR26 LTR ERV1 1 603 0 1071 186 57 36 chr1 236150922 236151170 -6513183 - MIR SINE MIR -7 255 3 236 0 0 0 chr1 236151477 236151502 -6512851 - LTR26 LTR ERV1 -240 363 339 2317 97 0 7 chr1 236151620 236151919 -6512434 + AluSx SINE Alu 1 297 -15 251 259 53 38 chr1 236153882 236154013 -6510340 + LTR16C LTR ERVL 359 491 0 238 294 77 51 chr1 236154791 236154987 -6509366 - MIR SINE MIR -46 216 18 32 0 0 0 chr1 236155737 236155769 -6508584 + AT_rich Low_complexity Low_complexity 1 32 0 317 338 15 29 chr1 236156019 236156155 -6508198 - MER5A DNA MER1_type -18 171 38 23 0 0 0 chr1 236156705 236156728 -6507625 + AT_rich Low_complexity Low_complexity 1 23 0 232 281 18 0 chr1 236157089 236157146 -6507207 + MER91A DNA MER1_type 109 166 -30 523 140 178 0 chr1 236157953 236158060 -6506293 - MER33 DNA MER1_type 0 324 199 1622 204 41 9 chr1 236158061 236158404 -6505949 + MLT1A1 LTR MaLR 1 354 -11 830 166 83 0 chr1 236158413 236158594 -6505759 - MER33 DNA MER1_type -124 200 5 434 331 152 24 chr1 236159232 236159646 -6504707 - L2 LINE L2 -2782 532 66 485 294 162 18 chr1 236159762 236160008 -6504345 + MIR SINE MIR 1 258 -4 352 313 8 0 chr1 236160023 236160151 -6504202 - L1ME LINE L1 -430 5691 5563 197 333 52 21 chr1 236160268 236160364 -6503989 + MER5A DNA MER1_type 91 189 0 222 116 0 0 chr1 236160812 236160855 -6503498 + (A)n Simple_repeat Simple_repeat 1 43 0 382 346 105 22 chr1 236160956 236161280 -6503073 + L2 LINE L2 2465 2815 -499 379 285 171 10 chr1 236162270 236162463 -6501890 + MIR SINE MIR 7 230 -32 750 259 96 4 chr1 236162524 236162763 -6501590 + MIR SINE MIR 2 262 0 277 237 13 26 chr1 236162762 236162838 -6501515 + L2 LINE L2 3234 3308 -5 * 886 214 73 10 chr1 236163539 236163745 -6500608 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 236164957 236164978 -6499375 + AT_rich Low_complexity Low_complexity 1 21 0 184 245 92 82 chr1 236165170 236165268 -6499085 + MIR SINE MIR 94 192 -70 196 321 0 86 chr1 236166057 236166138 -6498215 + L2 LINE L2 3235 3308 -5 288 284 165 47 chr1 236167828 236167955 -6496398 - MIR SINE MIR -65 197 56 2339 115 53 31 chr1 236169742 236170098 -6494255 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr1 236174687 236174709 -6489644 + AT_rich Low_complexity Low_complexity 1 22 0 330 341 22 28 chr1 236175399 236175578 -6488775 - MIR3 SINE MIR -11 197 20 202 136 17 34 chr1 236177472 236177531 -6486822 + (CGGGG)n Simple_repeat Simple_repeat 2 59 0 335 292 154 58 chr1 236177933 236178296 -6486057 + L1M2 LINE L1 590 987 -5862 213 233 0 0 chr1 236178410 236178453 -6485900 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 205 235 0 20 chr1 236179513 236179564 -6484789 + L2 LINE L2 3264 3313 0 353 252 19 19 chr1 236179606 236179709 -6484644 - L2 LINE L2 -92 3221 3119 1152 152 5 30 chr1 236179713 236179911 -6484442 + AluJo SINE Alu 1 193 -119 3233 71 112 0 chr1 236179935 236180372 -6483981 - LTR19A LTR ERV1 0 486 1 275 203 169 74 chr1 236180400 236180548 -6483805 - L2 LINE L2 -386 2928 2767 2476 128 72 43 chr1 236180820 236181234 -6483119 + MSTB LTR MaLR 1 426 0 5297 152 34 31 chr1 236181236 236182050 -6482303 + L1MB4 LINE L1 4779 5609 -571 1784 142 3 28 chr1 236182050 236182338 -6482015 + AluJo SINE Alu 15 295 -17 5297 152 34 31 chr1 236182338 236182903 -6481450 + L1MB4 LINE L1 5609 6171 -9 1683 112 0 0 chr1 236183398 236183613 -6480740 + AluSx SINE Alu 2 216 -96 2323 73 25 0 chr1 236184769 236185055 -6479298 + AluY SINE Alu 1 293 -18 1299 225 85 83 chr1 236185152 236185645 -6478708 + HAL1 LINE L1 1383 1876 -631 492 261 77 0 chr1 236186649 236186779 -6477574 + L2 LINE L2 1861 2000 -1314 283 270 108 88 chr1 236386927 236387131 -6277222 + L1MC4 LINE L1 5504 5711 -2097 484 216 37 45 chr1 236387131 236387265 -6277088 + Charlie1 DNA MER1_type 2290 2422 -339 436 226 26 17 chr1 236387269 236387384 -6276969 + L1MC4 LINE L1 5730 5845 -1963 193 344 54 21 chr1 236387879 236387972 -6276381 + L2 LINE L2 2979 3074 -198 895 133 6 54 chr1 236388994 236389160 -6275193 - AluJb SINE Alu -152 160 3 4494 224 109 11 chr1 236389802 236391127 -6273226 + L1MC4 LINE L1 6458 7913 -129 2198 96 3 7 chr1 236391130 236391432 -6272921 + AluSq SINE Alu 7 307 -6 318 98 0 0 chr1 236391432 236391483 -6272870 + L1MC4 LINE L1 7992 8042 0 1228 131 6 11 chr1 236391555 236391738 -6272615 - AluSg/x SINE Alu -18 294 113 5336 49 15 2 chr1 236392103 236393025 -6271328 - L1P2 LINE L1 -514 5641 4706 381 296 29 93 chr1 236393353 236393633 -6270720 - L2 LINE L2 -4 3268 3007 476 321 38 33 chr1 236394335 236394519 -6269834 + MIR3 SINE MIR 23 207 -1 228 229 21 0 chr1 236394541 236394589 -6269764 - L2 LINE L2 -13 3300 3252 3493 191 69 32 chr1 236394617 236395925 -6268428 + L1MB7 LINE L1 4796 6157 -27 1985 126 14 0 chr1 236395932 236396225 -6268128 - AluSg SINE Alu -13 297 1 213 397 15 29 chr1 236396280 236396416 -6267937 - L2 LINE L2 -162 3110 2977 32 26 0 0 chr1 236396585 236396624 -6267729 + AT_rich Low_complexity Low_complexity 1 39 0 31 42 0 42 chr1 236396660 236396731 -6267622 + AT_rich Low_complexity Low_complexity 1 68 0 198 0 0 0 chr1 236397049 236397071 -6267282 + (A)n Simple_repeat Simple_repeat 1 22 0 3579 145 35 39 chr1 236397529 236398239 -6266114 + MER39 LTR ERV1 1 707 0 1210 194 60 32 chr1 236400263 236400546 -6263807 + AluJo SINE Alu 2 292 -20 1559 142 67 92 chr1 236401178 236401524 -6262829 + MER1B DNA MER1_type 1 337 0 319 349 12 15 chr1 236401817 236401967 -6262386 + MIR SINE MIR 18 164 -61 1149 184 148 23 chr1 236401970 236402274 -6262079 - MLT1A2 LTR MaLR -4 370 29 2134 110 0 0 chr1 236403123 236403431 -6260922 + AluY SINE Alu 1 308 0 1821 171 0 0 chr1 236403443 236403724 -6260629 + AluJb SINE Alu 4 284 -28 21 0 0 0 chr1 236403824 236403845 -6260508 + AT_rich Low_complexity Low_complexity 1 21 0 216 267 92 50 chr1 236404841 236404961 -6259392 - MIR SINE MIR -6 256 132 812 164 0 0 chr1 236404980 236405114 -6259239 - FAM SINE Alu -30 155 22 198 204 27 113 chr1 236405115 236405215 -6259138 - MIR SINE MIR -67 141 57 200 59 29 0 chr1 236405376 236405410 -6258943 + (TA)n Simple_repeat Simple_repeat 2 36 0 1520 32 0 11 chr1 236405410 236405588 -6258765 - L1PA5 LINE L1 -7 6147 5970 648 201 82 32 chr1 236405785 236406004 -6258349 - L1MC5 LINE L1 -49 7912 7683 28 29 0 0 chr1 236407245 236407280 -6257073 + AT_rich Low_complexity Low_complexity 1 35 0 233 200 0 40 chr1 236407313 236407363 -6256990 + L2 LINE L2 3225 3272 0 229 300 62 25 chr1 236407499 236407579 -6256774 - L2 LINE L2 -31 3282 3200 267 210 48 53 chr1 236408006 236408137 -6256216 + L2 LINE L2 3127 3309 -4 249 246 33 0 chr1 236408142 236408203 -6256150 - L2 LINE L2 -1406 1908 1846 1119 150 16 1 chr1 236411941 236412136 -6252217 - L1MB3 LINE L1 -248 5935 5738 244 308 15 23 chr1 236412127 236412257 -6252096 - L1MEc LINE L1 -4722 1999 1871 * 274 198 37 12 chr1 236412246 236412327 -6252026 - L1MEc LINE L1 -5145 1395 1313 2789 191 70 7 chr1 236412529 236413131 -6251222 + MER82 DNA MER2_type 11 650 -3 1536 193 7 27 chr1 236413185 236413486 -6250867 + AluJo SINE Alu 1 295 -17 26 50 0 0 chr1 236414042 236414082 -6250271 + AT_rich Low_complexity Low_complexity 1 40 0 264 30 0 0 chr1 236414252 236414285 -6250068 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1900 125 0 21 chr1 236414290 236414569 -6249784 - AluJb SINE Alu -29 283 11 823 265 144 34 chr1 236414570 236414718 -6249635 + L2 LINE L2 2659 2789 -524 1852 116 34 85 chr1 236414718 236415072 -6249281 + MER1B DNA MER1_type 2 337 0 823 265 144 34 chr1 236415072 236415475 -6248878 + L2 LINE L2 2789 3280 -33 1617 168 46 23 chr1 236416261 236416564 -6247789 + AluJo SINE Alu 1 310 -2 183 258 98 68 chr1 236416647 236416779 -6247574 - L2 LINE L2 -221 3051 2916 216 0 0 0 chr1 236418630 236418654 -6245699 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1457 184 52 4 chr1 236418654 236418921 -6245432 - AluJo SINE Alu -32 280 1 21 71 0 0 chr1 236419168 236419210 -6245143 + AT_rich Low_complexity Low_complexity 1 42 0 386 273 196 29 chr1 236419382 236419739 -6244614 + MER110A LTR ERV1 1 453 -15 467 332 164 25 chr1 236420228 236420746 -6243607 - L2 LINE L2 -1177 2137 1548 366 271 7 43 chr1 236420784 236420924 -6243429 + L1ME4a LINE L1 5536 5670 -451 308 234 96 21 chr1 236420968 236421062 -6243291 + L1ME4a LINE L1 5812 5912 -209 1911 216 77 142 chr1 236421313 236422478 -6241875 + MER52A LTR ERV1 666 1755 0 427 292 76 13 chr1 236423066 236423254 -6241099 + MIR SINE MIR 38 236 -26 333 174 51 31 chr1 236423293 236423391 -6240962 + MER113 DNA MER1_type? 30 129 -392 378 200 47 0 chr1 236423417 236423502 -6240851 + MER89 LTR ERV1 1 89 -470 716 214 128 5 chr1 236423559 236423746 -6240607 + MER89 LTR ERV1 277 486 -73 290 229 34 120 chr1 236424695 236424870 -6239483 + L1ME LINE L1 5723 5882 -284 972 155 84 14 chr1 236424946 236425159 -6239194 - Tigger1 DNA MER2_type -1 2417 2190 792 156 15 7 chr1 236425151 236425286 -6239067 - Tigger1 DNA MER2_type -2282 136 1 * 285 203 76 85 chr1 236425428 236425546 -6238807 + L2 LINE L2 3197 3313 0 6052 126 138 16 chr1 236425681 236426777 -6237576 - Tigger3b DNA MER2_type 0 1231 2 658 284 58 29 chr1 236427425 236427668 -6236685 + MIR SINE MIR 11 260 -2 323 345 64 18 chr1 236428304 236428524 -6235829 + L2 LINE L2 2826 3055 -217 * 675 275 44 6 chr1 236428516 236428698 -6235655 + MIR SINE MIR 59 247 -15 282 272 133 64 chr1 236430312 236430485 -6233868 + L2 LINE L2 2451 2635 -679 945 191 47 8 chr1 236430500 236430756 -6233597 - Charlie5 DNA MER1_type 0 2617 2352 546 187 102 37 chr1 236430754 236430941 -6233412 - Charlie5 DNA MER1_type -2412 200 2 * 375 320 0 10 chr1 236431286 236431383 -6232970 + L2 LINE L2 3160 3255 -17 484 214 164 21 chr1 236431899 236432039 -6232314 + MER58A DNA MER1_type 2 161 0 227 278 28 14 chr1 236433364 236433436 -6230917 - MER2 DNA MER2_type -5 340 268 666 170 9 0 chr1 236433466 236433572 -6230781 - MER2 DNA MER2_type -237 108 2 2178 115 3 0 chr1 236433708 236434004 -6230349 + AluSx SINE Alu 1 297 -15 326 252 25 59 chr1 236434361 236434480 -6229873 - MLT1J2 LTR MaLR -269 181 67 332 222 0 0 chr1 236435021 236435093 -6229260 + L1P5 LINE L1 5365 5436 -718 455 160 130 20 chr1 236435121 236435221 -6229132 + FLAM_C SINE Alu 17 127 -16 1503 263 168 3 chr1 236435225 236435803 -6228550 + L1ME3A LINE L1 5493 6165 -5 2761 13 0 0 chr1 236435820 236436123 -6228230 + AluYa5 SINE Alu 1 303 -8 1854 125 7 49 chr1 236436407 236436712 -6227641 + AluJb SINE Alu 1 292 -20 302 239 132 88 chr1 236436809 236436953 -6227400 - MIR3 SINE MIR -39 169 16 957 124 237 0 chr1 236436953 236437139 -6227214 - MER30 DNA MER1_type 0 230 1 302 239 132 88 chr1 236437139 236437153 -6227200 - MIR3 SINE MIR -192 16 4 286 361 186 3 chr1 236440525 236440821 -6223532 + L2 LINE L2 1751 2100 -1214 321 169 0 0 chr1 236441177 236441236 -6223117 + (CA)n Simple_repeat Simple_repeat 1 59 0 2193 121 0 0 chr1 236441369 236441667 -6222686 - AluSx SINE Alu -14 298 1 237 279 13 0 chr1 236444827 236444906 -6219447 - MER94 DNA DNA -36 98 19 516 218 33 144 chr1 236445155 236445288 -6219065 + MER20 DNA MER1_type 1 97 -122 1682 143 45 48 chr1 236445288 236445623 -6218730 + MER1B DNA MER1_type 4 337 0 516 218 33 144 chr1 236445623 236445732 -6218621 + MER20 DNA MER1_type 97 216 -3 229 289 144 10 chr1 236445734 236445831 -6218522 + L2 LINE L2 3204 3313 0 741 149 0 7 chr1 236445863 236446004 -6218349 - AluSg/x SINE Alu -22 290 151 13643 25 4 0 chr1 236446125 236447840 -6216513 - L1P1 LINE L1 -679 5476 3755 3741 37 0 0 chr1 236447837 236448298 -6216055 + L1P1 LINE L1 3304 3764 -2382 * 230 314 48 0 chr1 236448419 236448543 -6215810 - L1P LINE L1 -1140 5006 4877 4776 172 38 28 chr1 236448737 236449119 -6215234 - L1MB1 LINE L1 -5 6163 5786 1341 167 69 31 chr1 236449119 236449407 -6214946 - AluJo SINE Alu -13 299 1 4776 172 38 28 chr1 236449407 236450784 -6213569 - L1MB1 LINE L1 -382 5786 4377 1510 211 49 0 chr1 236450784 236451088 -6213265 - MLT1A1 LTR MaLR 0 365 47 192 293 0 141 chr1 236451442 236451633 -6212720 + L2 LINE L2 2869 3032 -240 438 320 60 31 chr1 236452874 236453324 -6211029 + L1MEc LINE L1 1011 1473 -4923 824 151 0 0 chr1 236453547 236453666 -6210687 + FLAM_C SINE Alu 1 119 -24 727 285 176 5 chr1 236454234 236454648 -6209705 + L1MEc LINE L1 2317 2801 -3414 3537 81 10 10 chr1 236454648 236455156 -6209197 - L1P LINE L1 -2486 3660 3153 * 5350 98 34 30 chr1 236455151 236455836 -6208517 - L1P LINE L1 -3603 2543 1852 1880 130 3 7 chr1 236455836 236456121 -6208232 + AluSx SINE Alu 21 304 -8 5350 98 34 30 chr1 236456121 236456283 -6208070 - L1P LINE L1 -4294 1852 1692 12190 83 9 5 chr1 236456283 236458756 -6205597 + L1PA7 LINE L1 3664 6154 0 237 238 16 16 chr1 236459193 236459256 -6205097 + CT-rich Low_complexity Low_complexity 4 66 0 27 0 0 0 chr1 236459502 236459529 -6204824 + AT_rich Low_complexity Low_complexity 1 27 0 184 328 17 0 chr1 236459551 236459609 -6204744 - L2 LINE L2 -8 3305 3247 581 215 145 47 chr1 236459631 236459845 -6204508 - MIR SINE MIR -6 256 22 26 0 0 0 chr1 236460576 236460602 -6203751 + AT_rich Low_complexity Low_complexity 1 26 0 387 332 86 22 chr1 236460981 236461213 -6203140 - MIR SINE MIR -6 256 10 451 248 8 41 chr1 236461425 236461546 -6202807 + MIR3 SINE MIR 83 199 -9 192 152 0 0 chr1 236461650 236461683 -6202670 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 2562 142 44 7 chr1 236463577 236464013 -6200340 - Tigger2 DNA MER2_type 0 2718 2267 381 221 0 0 chr1 236463998 236464066 -6200287 - Tigger2 DNA MER2_type -2650 68 1 * 319 325 70 60 chr1 236464152 236464352 -6200001 + MIR SINE MIR 20 221 -41 216 111 0 0 chr1 236464574 236464610 -6199743 + (TTG)n Simple_repeat Simple_repeat 3 38 0 2232 85 0 7 chr1 236464807 236465101 -6199252 - AluSx SINE Alu -15 297 6 27 62 0 0 chr1 236465369 236465417 -6198936 + AT_rich Low_complexity Low_complexity 1 48 0 278 315 87 61 chr1 236466020 236466445 -6197908 - L2 LINE L2 -655 2659 2224 899 298 123 42 chr1 236466524 236466973 -6197380 + L2 LINE L2 2826 3310 -3 2132 116 0 3 chr1 236467410 236467702 -6196651 + AluSx SINE Alu 1 291 -21 319 88 0 18 chr1 236467960 236468017 -6196336 - L1MB4 LINE L1 -1 6179 6124 1745 117 57 13 chr1 236468020 236468320 -6196033 - AluSp SINE Alu 0 313 1 632 275 93 24 chr1 236468417 236468816 -6195537 + MLT1J2 LTR MaLR 1 450 0 1981 84 6 75 chr1 236469578 236469899 -6194454 + AluY SINE Alu 1 299 -12 26 74 0 0 chr1 236469935 236469989 -6194364 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr1 236470392 236470416 -6193937 + AT_rich Low_complexity Low_complexity 1 24 0 265 404 0 0 chr1 236470582 236470681 -6193672 - L3 LINE CR1 -11 1566 1468 25 51 0 0 chr1 236470882 236470921 -6193432 + AT_rich Low_complexity Low_complexity 1 39 0 211 226 97 0 chr1 236473665 236473727 -6190626 + L2 LINE L2 3246 3313 0 252 0 0 0 chr1 236474576 236474604 -6189749 + (T)n Simple_repeat Simple_repeat 1 28 0 1979 118 6 29 chr1 236476997 236477310 -6187043 - AluSg SINE Alu -4 306 1 185 179 13 141 chr1 236477492 236477570 -6186783 - MIR3 SINE MIR -39 169 102 21 71 0 0 chr1 236478004 236478046 -6186307 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr1 236478603 236478639 -6185714 + AT_rich Low_complexity Low_complexity 1 36 0 442 109 0 0 chr1 236480672 236480736 -6183617 + L1PA16 LINE L1 6087 6150 -16 774 266 122 18 chr1 236481224 236481446 -6182907 - MIR SINE MIR -5 257 13 223 269 195 20 chr1 236481447 236481596 -6182757 + MIR SINE MIR 53 227 -35 248 130 43 0 chr1 236483146 236483192 -6181161 + U2 snRNA snRNA 1 48 -140 284 292 119 6 chr1 236483950 236484103 -6180250 + L2 LINE L2 3146 3311 -2 2169 109 6 6 chr1 236484558 236484870 -6179483 - AluSx SINE Alu 0 312 1 611 278 135 9 chr1 236485801 236486031 -6178322 - MIR SINE MIR -2 260 2 2303 92 0 0 chr1 236487547 236487842 -6176511 + AluSc SINE Alu 1 295 -14 1113 246 117 64 chr1 236488236 236488707 -6175646 - MLT1D LTR MaLR -8 497 2 594 0 0 0 chr1 236488835 236488901 -6175452 + (TA)n Simple_repeat Simple_repeat 1 66 0 3296 208 86 9 chr1 236490525 236491343 -6173010 + Charlie1 DNA MER1_type 1881 2761 0 216 296 25 86 chr1 236494672 236494834 -6169519 + MIR3 SINE MIR 53 204 -4 * 281 333 0 0 chr1 236494833 236494917 -6169436 - L2 LINE L2 -239 3033 2950 504 0 0 0 chr1 236495070 236495126 -6169227 + (TA)n Simple_repeat Simple_repeat 1 56 0 214 349 137 20 chr1 236495314 236495460 -6168893 + L2 LINE L2 1756 1918 -1396 1190 216 81 70 chr1 236495460 236495621 -6168732 - MER39 LTR ERV1 0 707 549 2210 94 7 17 chr1 236495621 236495918 -6168435 - AluSx SINE Alu -18 294 1 1190 216 81 70 chr1 236495918 236496200 -6168153 - MER39 LTR ERV1 -158 549 259 247 203 0 34 chr1 236496173 236496232 -6168121 - MER34 LTR ERV1 -418 124 68 * 678 339 140 41 chr1 236496266 236497437 -6166916 + L2 LINE L2 1907 3216 -56 327 368 0 38 chr1 236497475 236497608 -6166745 - MIR3 SINE MIR -47 161 34 1597 177 43 20 chr1 236498391 236498690 -6165663 - AluJb SINE Alu 0 312 7 496 133 143 20 chr1 236498787 236498885 -6165468 + FLAM_A SINE Alu 28 137 -5 23 0 0 0 chr1 236499170 236499193 -6165160 + AT_rich Low_complexity Low_complexity 1 23 0 506 175 87 8 chr1 236500236 236500362 -6163991 - L1MA4 LINE L1 -5 6295 6160 1439 219 7 16 chr1 236501615 236501921 -6162432 + AluJo SINE Alu 1 303 -9 2235 110 3 0 chr1 236502749 236503048 -6161305 + AluSp SINE Alu 2 301 -12 22 0 0 0 chr1 236504438 236504460 -6159893 + AT_rich Low_complexity Low_complexity 1 22 0 297 258 77 71 chr1 236504872 236505027 -6159326 - MLT1G LTR MaLR -260 330 175 1874 234 70 7 chr1 236505128 236505790 -6158563 - L1ME1 LINE L1 -268 5967 5261 680 276 31 0 chr1 236505847 236506043 -6158310 - L1ME1 LINE L1 -9 6157 5956 247 311 59 8 chr1 236506052 236506171 -6158182 - L1ME1 LINE L1 -971 5244 5120 3563 224 53 29 chr1 236506201 236507290 -6157063 - L1ME1 LINE L1 -1074 5141 4027 1000 226 56 102 chr1 236507301 236507832 -6156521 - L1ME1 LINE L1 -4287 2109 1459 328 226 113 17 chr1 236507811 236507926 -6156427 - L1MA10 LINE L1 0 6403 6278 * 21 36 0 0 chr1 236508104 236508132 -6156221 + AT_rich Low_complexity Low_complexity 1 28 0 188 347 0 14 chr1 236508759 236508831 -6155522 - L2 LINE L2 -1 3312 3242 268 270 36 45 chr1 236509032 236509143 -6155210 - L2 LINE L2 -1 3312 3203 1525 163 44 7 chr1 236509149 236509419 -6154934 + AluJb SINE Alu 1 280 -32 225 0 0 0 chr1 236509421 236509446 -6154907 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 256 268 0 0 chr1 236509641 236509712 -6154641 - L1ME1 LINE L1 -326 5795 5725 4269 255 82 29 chr1 236509721 236510795 -6153558 - L1ME1 LINE L1 -12 6223 5207 4913 166 119 9 chr1 236510795 236511902 -6152451 + Tigger3b DNA MER2_type 3 1231 0 4269 255 82 29 chr1 236511902 236512062 -6152291 - L1ME1 LINE L1 -1028 5207 5057 1212 197 91 23 chr1 236512062 236512326 -6152027 + AluJo SINE Alu 1 282 -30 4269 255 82 29 chr1 236512326 236513242 -6151111 - L1ME1 LINE L1 -1178 5057 3921 1685 163 24 17 chr1 236513242 236513530 -6150823 - AluSx SINE Alu -22 290 1 4269 255 82 29 chr1 236513530 236513929 -6150424 - L1ME1 LINE L1 -2314 3921 3544 3390 282 72 37 chr1 236513951 236514578 -6149775 - L1ME1 LINE L1 -4386 2010 1406 2411 74 0 0 chr1 236514578 236514888 -6149465 - AluY SINE Alu -1 310 1 3390 282 72 37 chr1 236514888 236516035 -6148318 - L1ME1 LINE L1 -4990 1406 174 782 257 201 3 chr1 236516049 236516503 -6147850 - L1ME1 LINE L1 -4916 1299 795 4347 177 50 53 chr1 236516546 236517607 -6146746 - L1MA10 LINE L1 -12 6322 5276 2389 87 7 0 chr1 236517607 236517916 -6146437 - AluSq SINE Alu -2 311 1 4347 177 50 53 chr1 236517916 236518393 -6145960 - L1MA10 LINE L1 -1058 5276 4799 628 323 89 25 chr1 236518614 236519007 -6145346 - L1ME1 LINE L1 -5867 529 112 27 49 0 0 chr1 236519121 236519162 -6145191 + AT_rich Low_complexity Low_complexity 1 41 0 246 32 0 0 chr1 236519296 236519327 -6145026 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1758 155 3 3 chr1 236519327 236519612 -6144741 - AluSx SINE Alu -26 286 2 233 342 70 0 chr1 236519671 236519785 -6144568 - L1ME LINE L1 -526 5595 5474 22 0 0 0 chr1 236519920 236519942 -6144411 + AT_rich Low_complexity Low_complexity 1 22 0 12747 192 29 37 chr1 236520046 236523738 -6140615 - L1PA16 LINE L1 0 6869 3129 234 111 0 0 chr1 236523738 236523783 -6140570 + LTR66 LTR ERVL 394 438 -172 12747 192 29 37 chr1 236523783 236526883 -6137470 - L1PA16 LINE L1 -3740 3129 5 6031 103 18 18 chr1 236528225 236529479 -6134874 - L1PA10 LINE L1 -4 6164 4911 2053 136 0 0 chr1 236529479 236529759 -6134594 + AluSx SINE Alu 1 280 -32 195 69 0 0 chr1 236529759 236529788 -6134565 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 6031 103 18 18 chr1 236529788 236529964 -6134389 - L1PA10 LINE L1 -1255 4913 4726 633 263 30 30 chr1 236530298 236530496 -6133857 + MIR SINE MIR 1 198 -64 2145 123 13 3 chr1 236530497 236530806 -6133547 + AluSx SINE Alu 1 312 0 387 0 0 0 chr1 236530806 236530849 -6133504 + (TA)n Simple_repeat Simple_repeat 2 44 0 4236 75 2 0 chr1 236531235 236531794 -6132559 - L1PA7 LINE L1 -1516 4630 4071 7025 52 7 3 chr1 236531794 236533326 -6131027 + L1PA7 LINE L1 4648 6154 0 237 238 16 16 chr1 236533763 236533826 -6130527 + CT-rich Low_complexity Low_complexity 4 66 0 27 0 0 0 chr1 236534072 236534099 -6130254 + AT_rich Low_complexity Low_complexity 1 27 0 184 328 17 0 chr1 236534121 236534179 -6130174 - L2 LINE L2 -8 3305 3247 581 215 145 47 chr1 236534201 236534415 -6129938 - MIR SINE MIR -6 256 22 26 0 0 0 chr1 236535146 236535172 -6129181 + AT_rich Low_complexity Low_complexity 1 26 0 387 332 86 22 chr1 236535551 236535783 -6128570 - MIR SINE MIR -6 256 10 451 248 8 41 chr1 236535995 236536116 -6128237 + MIR3 SINE MIR 83 199 -9 192 152 0 0 chr1 236536220 236536253 -6128100 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 2547 144 44 7 chr1 236538147 236538583 -6125770 - Tigger2 DNA MER2_type 0 2718 2267 380 221 0 0 chr1 236538568 236538636 -6125717 - Tigger2 DNA MER2_type -2650 68 1 * 315 325 70 60 chr1 236538722 236538922 -6125431 + MIR SINE MIR 20 221 -41 216 111 0 0 chr1 236539144 236539180 -6125173 + (TTG)n Simple_repeat Simple_repeat 3 38 0 2267 85 0 7 chr1 236539377 236539671 -6124682 - AluSx SINE Alu -15 297 6 27 62 0 0 chr1 236539939 236539987 -6124366 + AT_rich Low_complexity Low_complexity 1 48 0 304 313 87 61 chr1 236540590 236541015 -6123338 - L2 LINE L2 -655 2659 2224 888 298 123 42 chr1 236541094 236541543 -6122810 + L2 LINE L2 2826 3310 -3 2164 116 0 3 chr1 236541980 236542272 -6122081 + AluSx SINE Alu 1 291 -21 1154 205 27 0 chr1 236542420 236542644 -6121709 + L1PA16 LINE L1 5917 6146 -20 548 256 81 58 chr1 236542658 236543040 -6121313 - L1MC5 LINE L1 -281 7680 7290 452 336 41 10 chr1 236543007 236543302 -6121051 - L1MC4 LINE L1 -549 7493 7190 * 2383 80 0 3 chr1 236543570 236543871 -6120482 + AluSc SINE Alu 3 302 -7 261 289 11 0 chr1 236543989 236544079 -6120274 + L1ME4a LINE L1 5777 5867 -1941 250 191 12 71 chr1 236544150 236544234 -6120119 + L1ME4a LINE L1 5992 6070 -51 477 122 20 20 chr1 236544297 236544395 -6119958 + L1MB3 LINE L1 6084 6181 -2 491 335 36 22 chr1 236545586 236545810 -6118543 + MIR SINE MIR 20 246 -16 2420 63 3 10 chr1 236546103 236546404 -6117949 + AluY SINE Alu 1 299 -12 232 324 59 29 chr1 236547451 236547553 -6116800 + L2 LINE L2 3205 3309 -4 360 271 49 8 chr1 236547890 236548012 -6116341 - MIR SINE MIR -122 140 14 1854 330 45 20 chr1 236548582 236549286 -6115067 + L2 LINE L2 950 1671 -1643 1424 242 135 55 chr1 236549281 236550164 -6114189 - L2 LINE L2 -4 3309 2337 * 1153 263 10 23 chr1 236550315 236550623 -6113730 + Tigger5 DNA MER2_type 4 307 -2016 * 1292 167 0 5 chr1 236550619 236550841 -6113512 + Tigger5 DNA MER2_type 2103 2323 0 2016 113 0 0 chr1 236551179 236551454 -6112899 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr1 236551458 236551478 -6112875 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 393 315 128 23 chr1 236551711 236551930 -6112423 - MIR SINE MIR 0 262 21 270 282 16 141 chr1 236552199 236552454 -6111899 - L2 LINE L2 -218 3054 2832 33 25 0 0 chr1 236552780 236552820 -6111533 + AT_rich Low_complexity Low_complexity 1 40 0 2479 63 0 25 chr1 236552979 236553297 -6111056 + AluY SINE Alu 1 310 -1 371 311 62 6 chr1 236553372 236553533 -6110820 + MER117 DNA MER1_type 2 171 -26 199 236 69 28 chr1 236553680 236553752 -6110601 - MIR SINE MIR -59 203 129 245 174 0 0 chr1 236554425 236554471 -6109882 - L1ME LINE L1 -266 5855 5810 3451 22 0 0 chr1 236554762 236555164 -6109189 - L1PA3 LINE L1 0 6155 5754 2381 90 0 14 chr1 236555264 236555608 -6108745 + L1PA7 LINE L1 5798 6136 -18 183 156 0 0 chr1 236555609 236555641 -6108712 + (TATG)n Simple_repeat Simple_repeat 3 34 0 * 535 108 21 0 chr1 236555640 236555733 -6108620 + (CA)n Simple_repeat Simple_repeat 2 96 0 3019 242 63 27 chr1 236555736 236556752 -6107601 + L1M4 LINE L1 2725 3703 -2443 2083 142 3 0 chr1 236556752 236557062 -6107291 - AluSx SINE Alu -1 311 1 3019 242 63 27 chr1 236557062 236557520 -6106833 + L1M4 LINE L1 3703 4143 -2003 1928 160 51 3 chr1 236557520 236557852 -6106501 - MER7A DNA MER2_type 0 346 1 3019 242 63 27 chr1 236557852 236558092 -6106261 + L1M4 LINE L1 4143 4659 -1487 2147 123 7 0 chr1 236558383 236558676 -6105677 + AluSx SINE Alu 1 295 -17 346 220 77 11 chr1 236559901 236559992 -6104361 + MIR SINE MIR 7 103 -159 516 304 126 17 chr1 236560447 236560677 -6103676 - MIR SINE MIR -2 260 6 2294 60 23 10 chr1 236562428 236562730 -6101623 + AluY SINE Alu 1 306 -5 1725 184 7 7 chr1 236563079 236563378 -6100975 - AluJb SINE Alu -13 299 1 22 0 0 0 chr1 236563411 236563433 -6100920 + AT_rich Low_complexity Low_complexity 1 22 0 288 41 122 0 chr1 236563662 236563711 -6100642 - MLT2A2 LTR ERVL 0 444 390 318 106 0 0 chr1 236563711 236563758 -6100595 + (TG)n Simple_repeat Simple_repeat 2 48 0 2935 84 30 0 chr1 236563783 236564176 -6100177 - MLT2A2 LTR ERVL -47 406 2 632 244 82 111 chr1 236564176 236564724 -6099629 - MLT1H1 LTR MaLR -17 538 1 2890 148 6 26 chr1 236565139 236565633 -6098720 - MER41B LTR ERV1 -38 597 114 1932 237 34 19 chr1 236565633 236566249 -6098104 - L1M4 LINE L1 -2485 3661 3037 455 245 47 47 chr1 236566984 236567176 -6097177 - HAL1 LINE L1 -848 1659 1468 21 0 0 0 chr1 236567856 236567877 -6096476 + AT_rich Low_complexity Low_complexity 1 21 0 378 257 29 59 chr1 236568316 236568452 -6095901 + MER20 DNA MER1_type 28 159 -60 199 269 154 10 chr1 236568459 236568563 -6095790 + MIR SINE MIR 117 235 -27 463 273 9 0 chr1 236568621 236568731 -6095622 + MIR SINE MIR 95 205 -57 201 122 41 41 chr1 236568748 236568797 -6095556 + (TTAAA)n Simple_repeat Simple_repeat 5 53 0 234 185 0 46 chr1 236568800 236568865 -6095488 + (TTA)n Simple_repeat Simple_repeat 1 62 0 1380 202 22 13 chr1 236569198 236569510 -6094843 - L1MC4a LINE L1 -441 7367 7053 * 2526 200 100 37 chr1 236569504 236570403 -6093950 - L1M4 LINE L1 -2885 3497 2542 1455 143 21 125 chr1 236570405 236570700 -6093653 + MER44D DNA MER2_type 1 520 -1971 1244 192 130 16 chr1 236570700 236571008 -6093345 - MER2 DNA MER2_type 0 344 2 1455 143 21 125 chr1 236571008 236571089 -6093264 + MER44D DNA MER2_type 520 608 -1 2699 160 35 19 chr1 236571138 236572009 -6092344 - L1M4 LINE L1 -3910 2474 1498 9890 133 42 27 chr1 236572009 236573445 -6090908 + Tigger1 DNA MER2_type 635 2102 -316 1898 131 84 0 chr1 236573445 236573719 -6090634 + AluSx SINE Alu 2 298 -14 9890 133 42 27 chr1 236573719 236574041 -6090312 + Tigger1 DNA MER2_type 2102 2418 0 298 135 0 0 chr1 236574258 236574310 -6090043 + HAL1b LINE L1 746 797 -551 22 0 0 0 chr1 236574347 236574369 -6089984 + AT_rich Low_complexity Low_complexity 1 22 0 1776 199 36 69 chr1 236574369 236574816 -6089537 + MLT1-int LTR MaLR 877 1308 -63 1586 269 34 72 chr1 236574831 236575223 -6089130 - MER77-int LTR ERV1 -1038 3153 2790 2451 73 0 0 chr1 236575223 236575523 -6088830 - AluY SINE Alu -11 300 1 1586 269 34 72 chr1 236575523 236575726 -6088627 - MER77-int LTR ERV1 -1401 2790 2581 2244 111 7 3 chr1 236575731 236576038 -6088315 - AluSq SINE Alu -4 309 2 1514 251 56 94 chr1 236576039 236576429 -6087924 - MER77-int LTR ERV1 -1583 2608 2254 1511 170 13 37 chr1 236576429 236576729 -6087624 + AluJb SINE Alu 1 293 -19 1514 251 56 94 chr1 236576729 236577030 -6087323 - MER77-int LTR ERV1 -1937 2254 1943 255 323 62 44 chr1 236577331 236577672 -6086681 - MERVL LTR ERVL -2613 2872 2526 879 136 0 23 chr1 236577689 236577821 -6086532 - FLAM_C SINE Alu -3 130 2 2879 279 47 40 chr1 236578377 236579583 -6084770 - MER77-int LTR ERV1 -2227 4531 3317 2165 126 0 3 chr1 236579601 236579910 -6084443 + AluSx SINE Alu 1 308 -4 795 275 21 13 chr1 236580671 236580907 -6083446 - MER77-int LTR ERV1 -3908 283 46 1022 185 77 0 chr1 236580942 236581137 -6083216 - MER77 LTR ERV1 0 605 396 2458 190 62 57 chr1 236581148 236581679 -6082674 - MLT2B3 LTR ERVL -6 548 15 1423 210 78 70 chr1 236581700 236582085 -6082268 - MER77 LTR ERV1 -216 389 2 2578 281 84 38 chr1 236582440 236583729 -6080624 - L2 LINE L2 0 3313 1962 207 111 0 56 chr1 236583832 236583868 -6080485 + MIR SINE MIR 34 67 -141 405 136 0 0 chr1 236584587 236584653 -6079700 + L1MA4 LINE L1 5384 5449 -854 1628 188 18 21 chr1 236584653 236584983 -6079370 - THE1C LTR MaLR 0 375 47 4005 158 81 4 chr1 236585126 236585915 -6078438 + L1MA4 LINE L1 5444 6293 -7 277 296 28 19 chr1 236587289 236587397 -6076956 + L2 LINE L2 2534 2642 -672 258 311 92 41 chr1 236587540 236587736 -6076617 + L2 LINE L2 3107 3312 -1 280 321 75 9 chr1 236587868 236587974 -6076379 + L2 LINE L2 3192 3304 -9 210 71 0 0 chr1 236587980 236588008 -6076345 + (TGGG)n Simple_repeat Simple_repeat 3 30 0 260 358 0 12 chr1 236588058 236588139 -6076214 - L2 LINE L2 -4 3268 3189 225 0 0 0 chr1 236588808 236588833 -6075520 + (T)n Simple_repeat Simple_repeat 1 25 0 1489 97 23 0 chr1 236588862 236589079 -6075274 + L1PB1 LINE L1 5930 6151 0 1372 185 4 36 chr1 236589121 236589397 -6074956 + AluJo SINE Alu 22 288 -24 231 229 0 0 chr1 236591927 236591988 -6072365 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 366 278 0 0 chr1 236591990 236592080 -6072273 + L1MC4 LINE L1 6614 6703 -1339 2315 97 0 0 chr1 236592084 236592382 -6071971 - AluSc SINE Alu -11 298 1 21 0 0 0 chr1 236592421 236592442 -6071911 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 236592567 236592589 -6071764 + AT_rich Low_complexity Low_complexity 1 22 0 1823 144 3 23 chr1 236592732 236593031 -6071322 + AluJb SINE Alu 7 299 -13 1589 197 0 7 chr1 236593446 236593741 -6070612 - AluJb SINE Alu -19 293 1 676 238 219 21 chr1 236594014 236594342 -6070011 + L1MC4a LINE L1 5537 5929 -1879 328 338 110 32 chr1 236594695 236594849 -6069504 + L2 LINE L2 3107 3272 0 268 297 81 18 chr1 236595028 236595139 -6069214 - L2 LINE L2 -12 3301 3184 1598 157 0 0 chr1 236595489 236595725 -6068628 - AluSx SINE Alu -36 276 41 369 0 0 0 chr1 236595773 236595814 -6068539 + (CA)n Simple_repeat Simple_repeat 2 42 0 1411 383 0 13 chr1 236596099 236596410 -6067943 + AluSx SINE Alu 3 309 -3 898 89 32 0 chr1 236596946 236597069 -6067284 + Tigger3(Golem) DNA MER2_type 2851 2977 -52 2206 111 62 0 chr1 236597069 236597422 -6066931 - THE1C LTR MaLR 0 375 1 10086 113 32 20 chr1 236597422 236598983 -6065370 - THE1C-int LTR MaLR 0 1580 1 442 181 0 0 chr1 236599131 236599203 -6065150 - AluJ/FLAM SINE Alu -240 72 1 520 316 109 8 chr1 236599404 236599639 -6064714 - MIR SINE MIR -12 250 1 550 174 37 0 chr1 236599761 236599870 -6064483 - MER81 DNA DNA 0 114 2 28 48 0 0 chr1 236600311 236600353 -6064000 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 236600654 236600676 -6063677 + AT_rich Low_complexity Low_complexity 1 22 0 1432 196 32 7 chr1 236600680 236600961 -6063392 + AluJo SINE Alu 5 292 -20 180 286 71 0 chr1 236601822 236601892 -6062461 + L3b LINE CR1 1296 1370 -213 5162 144 13 3 chr1 236602084 236602951 -6061402 - L1P LINE L1 -1446 4700 3826 336 191 60 36 chr1 236603161 236603245 -6061108 - L2 LINE L2 0 3313 3228 487 252 0 0 chr1 236603492 236603611 -6060742 - L1MA10 LINE L1 0 6334 6216 180 310 35 0 chr1 236603662 236603720 -6060633 + L2 LINE L2 3205 3264 -8 515 292 69 23 chr1 236603739 236603955 -6060398 - L2 LINE L2 -1229 2085 1860 327 235 41 20 chr1 236604492 236604590 -6059763 + HsTC2 DNA Tc2 1799 1898 0 21 36 0 0 chr1 236604625 236604653 -6059700 + AT_rich Low_complexity Low_complexity 1 28 0 203 231 26 0 chr1 236605180 236605219 -6059134 + L2 LINE L2 3223 3262 -10 811 236 77 14 chr1 236606680 236606888 -6057465 - MER58A DNA MER1_type -3 221 1 2070 106 3 0 chr1 236607752 236608034 -6056319 - AluSc SINE Alu -26 283 1 1446 141 27 97 chr1 236611443 236611742 -6052611 + AluJb SINE Alu 1 278 -34 21 0 0 0 chr1 236612719 236612740 -6051613 + AT_rich Low_complexity Low_complexity 1 21 0 589 303 64 9 chr1 236612844 236613062 -6051291 - L2 LINE L2 0 3313 3084 1523 199 74 195 chr1 236613075 236613560 -6050793 - MLT1G LTR MaLR 0 590 214 2480 169 30 8 chr1 236613560 236614028 -6050325 - L1MB7 LINE L1 -19 6165 5688 1523 199 74 195 chr1 236614028 236614219 -6050134 - MLT1G LTR MaLR -376 214 1 397 308 71 40 chr1 236614397 236614621 -6049732 - MIR SINE MIR -13 249 19 381 336 74 13 chr1 236615688 236615837 -6048516 - L2 LINE L2 0 3272 3115 2307 97 3 0 chr1 236623728 236624036 -6040317 - AluSx SINE Alu -3 309 1 185 0 40 0 chr1 236624454 236624479 -6039874 + (TA)n Simple_repeat Simple_repeat 2 27 0 333 309 10 55 chr1 236624717 236624925 -6039428 - MIR SINE MIR -46 216 18 2140 84 3 53 chr1 236625057 236625380 -6038973 - AluSc SINE Alu -2 307 1 482 365 142 26 chr1 236626057 236626319 -6038034 - L2 LINE L2 -421 2893 2663 1540 170 18 4 chr1 236626319 236626596 -6037757 + AluJo SINE Alu 1 281 -31 482 365 142 26 chr1 236626596 236627072 -6037281 - L2 LINE L2 -651 2663 2069 380 230 54 0 chr1 236628359 236628432 -6035921 + Tigger5 DNA MER2_type 2 78 -2245 322 182 0 0 chr1 236628432 236628487 -6035866 - Tigger5 DNA MER2_type -3 2320 2266 234 156 22 22 chr1 236628489 236628534 -6035819 + Tigger5 DNA MER2_type 2279 2323 0 2946 212 132 3 chr1 236628572 236629337 -6035016 - MER63C DNA MER1_type 0 930 67 268 237 0 0 chr1 236629529 236629588 -6034765 - MER63C DNA MER1_type -865 65 7 2467 114 8 3 chr1 236629794 236630152 -6034201 - THE1B LTR MaLR -2 362 3 308 306 118 12 chr1 236630164 236630334 -6034019 - MIR SINE MIR -74 188 1 1064 117 53 21 chr1 236631131 236631319 -6033034 + AluJo SINE Alu 11 204 -108 1309 161 55 29 chr1 236631443 236631740 -6032613 - AluJb SINE Alu 0 308 5 204 257 29 71 chr1 236632022 236632092 -6032261 - L2 LINE L2 0 3272 3206 199 357 0 0 chr1 236632252 236632308 -6032045 - L2 LINE L2 -8 3264 3209 21 0 0 0 chr1 236633022 236633043 -6031310 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr1 236633399 236633437 -6030916 + AT_rich Low_complexity Low_complexity 1 38 0 2045 234 91 5 chr1 236633901 236634486 -6029867 - L1MEc LINE L1 -1486 4729 4095 * 3745 236 46 22 chr1 236634485 236635589 -6028764 + L1MC4a LINE L1 6670 7800 -8 1695 249 48 31 chr1 236635599 236636245 -6028108 - L1MEc LINE L1 -2108 4107 3451 * 1991 231 94 42 chr1 236636244 236636552 -6027801 - L1MEc LINE L1 -3139 3076 2785 2402 124 55 29 chr1 236636552 236636972 -6027381 - Tigger2a DNA MER2_type -3 431 1 1991 231 94 42 chr1 236636972 236637237 -6027116 - L1MEc LINE L1 -3430 2785 2535 743 208 0 0 chr1 236637237 236637367 -6026986 - FLAM_A SINE Alu 0 133 4 1991 231 94 42 chr1 236637367 236638111 -6026242 - L1MEc LINE L1 -3680 2535 1710 233 250 40 26 chr1 236638438 236638514 -6025839 - L2 LINE L2 -631 2683 2607 2411 162 16 10 chr1 236639684 236640386 -6023967 + L1P5 LINE L1 4980 5684 -470 705 204 16 116 chr1 236640773 236640855 -6023498 - MIR SINE MIR -3 259 170 833 227 0 0 chr1 236640855 236641009 -6023344 - FRAM SINE Alu -12 154 1 705 204 16 116 chr1 236641009 236641032 -6023321 - MIR SINE MIR -92 170 146 2305 101 3 0 chr1 236641032 236641328 -6023025 + AluSx SINE Alu 1 297 -15 705 204 16 116 chr1 236641328 236641471 -6022882 - MIR SINE MIR -116 146 35 847 301 24 8 chr1 236642898 236643144 -6021209 - MIR SINE MIR -5 257 8 189 286 79 71 chr1 236643185 236643311 -6021042 + MIR SINE MIR 63 189 -73 327 333 150 24 chr1 236646240 236646447 -6017906 + L2 LINE L2 3020 3252 -20 237 33 0 0 chr1 236646671 236646701 -6017652 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 372 195 69 23 chr1 236646931 236647018 -6017335 - L2 LINE L2 0 3272 3182 1387 179 12 8 chr1 236649689 236649940 -6014413 + AluJo SINE Alu 43 294 -18 276 295 66 33 chr1 236650217 236650339 -6014014 + MIR SINE MIR 18 143 -65 186 233 0 0 chr1 236651006 236651049 -6013304 + MIR SINE MIR 111 153 -55 211 289 0 0 chr1 236651086 236651131 -6013222 + L3 LINE CR1 1514 1558 -19 1822 131 3 41 chr1 236651658 236651949 -6012404 + AluSx SINE Alu 1 280 -32 194 79 0 26 chr1 236651950 236651988 -6012365 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr1 236652151 236652172 -6012181 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 236652460 236652486 -6011867 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr1 236653640 236653668 -6010685 + AT_rich Low_complexity Low_complexity 1 28 0 215 282 26 26 chr1 236653755 236653833 -6010520 - L2 LINE L2 -5 3308 3231 34 0 0 0 chr1 236654101 236654135 -6010218 + AT_rich Low_complexity Low_complexity 1 34 0 215 0 67 0 chr1 236654240 236654270 -6010083 + (AATAG)n Simple_repeat Simple_repeat 4 35 0 601 289 98 26 chr1 236654799 236655065 -6009288 + L2 LINE L2 2600 2884 -430 333 365 46 76 chr1 236655099 236655494 -6008859 + L2 LINE L2 2887 3269 -3 427 311 47 68 chr1 236655532 236655756 -6008597 + MIR SINE MIR 3 219 -43 23 78 0 0 chr1 236656337 236656388 -6007965 + AT_rich Low_complexity Low_complexity 1 51 0 210 71 0 0 chr1 236656496 236656524 -6007829 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 404 255 38 19 chr1 236656525 236656631 -6007722 - L2 LINE L2 -15 3298 3191 727 284 35 5 chr1 236656958 236657159 -6007194 + MIR SINE MIR 8 214 -48 183 80 0 0 chr1 236657425 236657450 -6006903 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2715 209 149 25 chr1 236657450 236658281 -6006072 + L1MC4 LINE L1 6362 7311 -731 323 81 258 0 chr1 236658281 236658343 -6006010 - MADE1 DNA Mariner 0 80 3 2715 209 149 25 chr1 236658343 236658398 -6005955 + L1MC4 LINE L1 7311 7358 -684 742 269 25 0 chr1 236658409 236658606 -6005747 - MER63A DNA MER1_type -8 202 1 1893 136 4 14 chr1 236659412 236659721 -6004632 - AluJb SINE Alu 0 315 10 1121 246 54 27 chr1 236659744 236660191 -6004162 - L1ME1 LINE L1 -5 6161 5703 265 288 45 45 chr1 236660396 236660507 -6003846 + L2 LINE L2 3154 3264 -8 320 326 0 41 chr1 236660690 236660862 -6003491 + CT-rich Low_complexity Low_complexity 3 167 0 765 79 34 153 chr1 236661017 236661194 -6003159 - MER30 DNA MER1_type -74 156 1 295 260 23 164 chr1 236661234 236661411 -6002942 + MIR3 SINE MIR 54 205 -3 1982 161 3 0 chr1 236661676 236661986 -6002367 - AluSx SINE Alu -1 311 1 317 252 39 16 chr1 236662063 236662190 -6002163 - MER94 DNA DNA -2 132 3 246 341 98 53 chr1 236662468 236662846 -6001507 - L2 LINE L2 -3 3269 2875 198 0 0 0 chr1 236663326 236663348 -6001005 + (TG)n Simple_repeat Simple_repeat 1 22 0 2332 110 3 0 chr1 236663623 236663932 -6000421 + AluSx SINE Alu 1 310 -2 194 284 37 62 chr1 236664716 236664797 -5999556 + MIR SINE MIR 13 91 -171 2458 123 18 0 chr1 236664801 236665182 -5999171 - MER1A DNA MER1_type 0 529 142 405 253 136 19 chr1 236665203 236665357 -5998996 + MIR SINE MIR 89 260 -2 283 268 41 52 chr1 236665530 236665627 -5998726 + MIR SINE MIR 49 144 -64 1247 166 32 48 chr1 236666139 236666354 -5997999 + MER33 DNA MER1_type 17 227 -2358 1777 128 97 14 chr1 236666354 236666643 -5997710 - AluSp SINE Alu 0 313 1 1247 166 32 48 chr1 236666643 236666740 -5997613 + MER33 DNA MER1_type 227 324 0 504 208 21 14 chr1 236668524 236668668 -5995685 - MER103 DNA DNA -2 164 20 721 259 19 37 chr1 236668714 236668930 -5995423 + MIR SINE MIR 2 213 -49 2038 114 4 14 chr1 236668979 236669259 -5995094 + AluSx SINE Alu 1 277 -35 227 54 27 0 chr1 236669262 236669299 -5995054 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 291 321 104 15 chr1 236669512 236669646 -5994707 + MIR3 SINE MIR 17 162 -46 228 250 58 0 chr1 236669824 236669876 -5994477 + L2 LINE L2 3210 3264 -8 32 67 0 0 chr1 236672686 236672746 -5991607 + AT_rich Low_complexity Low_complexity 1 60 0 827 256 39 11 chr1 236673570 236673855 -5990498 + L1M4 LINE L1 4842 5134 -1012 366 136 15 0 chr1 236673856 236673922 -5990431 + LTR30 LTR ERV1 552 618 -104 1383 146 49 4 chr1 236673988 236674234 -5990119 + L1MC1 LINE L1 6061 6317 -16 209 184 0 0 chr1 236674360 236674398 -5989955 + (CA)n Simple_repeat Simple_repeat 2 39 0 306 263 40 0 chr1 236674592 236674668 -5989685 + L2 LINE L2 3233 3311 -2 422 300 100 50 chr1 236674689 236674929 -5989424 - MIR SINE MIR -10 252 1 341 238 152 9 chr1 236674988 236675093 -5989260 + L2 LINE L2 3193 3312 -1 24 0 0 0 chr1 236675685 236675709 -5988644 + AT_rich Low_complexity Low_complexity 1 24 0 868 94 0 0 chr1 236676742 236676859 -5987494 - AluSg/x SINE Alu -6 306 190 328 246 14 0 chr1 236676867 236676936 -5987417 + L2 LINE L2 3183 3252 -20 1896 136 13 3 chr1 236677587 236677897 -5986456 - L1PA13 LINE L1 -19 6144 5832 221 327 43 49 chr1 236678760 236678922 -5985431 + L2 LINE L2 2544 2704 -610 284 256 0 26 chr1 236679016 236679094 -5985259 + MIR SINE MIR 77 152 -110 531 206 29 0 chr1 236679097 236679199 -5985154 + MER5A DNA MER1_type 85 189 0 314 265 8 106 chr1 236679350 236679428 -5984925 + MIR3 SINE MIR 85 146 -62 1271 212 116 0 chr1 236679428 236679730 -5984623 + MER58B DNA MER1_type 3 339 -2 314 265 8 106 chr1 236679730 236679783 -5984570 + MIR3 SINE MIR 146 203 -5 2198 97 0 7 chr1 236680080 236680370 -5983983 - AluSc SINE Alu -5 304 17 614 238 100 6 chr1 236680649 236680809 -5983544 - MIR3 SINE MIR -7 201 27 327 251 84 42 chr1 236680991 236681214 -5983139 - MER5C DNA MER1_type 0 324 1 969 237 92 35 chr1 236681892 236682028 -5982325 - L1MC4 LINE L1 -2 8040 7913 315 0 0 0 chr1 236682028 236682063 -5982290 + (TG)n Simple_repeat Simple_repeat 2 36 0 969 237 92 35 chr1 236682063 236682360 -5981993 - L1MC4 LINE L1 -129 7913 7582 879 256 18 4 chr1 236685679 236685906 -5978447 + MIR SINE MIR 27 256 -6 38 51 0 0 chr1 236685939 236685998 -5978355 + AT_rich Low_complexity Low_complexity 1 59 0 23 68 0 0 chr1 236687181 236687225 -5977128 + AT_rich Low_complexity Low_complexity 1 44 0 2083 135 3 0 chr1 236688795 236689098 -5975255 + AluSx SINE Alu 1 304 -8 592 195 16 31 chr1 236691300 236691428 -5972925 - L2 LINE L2 -6 3266 3141 1553 175 72 14 chr1 236692034 236692326 -5972027 - AluJb SINE Alu -3 309 1 2360 161 23 10 chr1 236694258 236694643 -5969710 - MLT1B LTR MaLR 0 390 1 9140 112 19 4 chr1 236694687 236695967 -5968386 - HSMAR2 DNA Mariner -1 1301 2 2066 119 35 0 chr1 236696063 236696349 -5968004 - AluSg SINE Alu -14 296 1 322 333 129 0 chr1 236696582 236696753 -5967600 + MIR3 SINE MIR 16 208 0 * 326 233 27 0 chr1 236696749 236696822 -5967531 - L2 LINE L2 0 3313 3239 4255 243 64 25 chr1 236696832 236697814 -5966539 + L1MCa LINE L1 2351 3419 -3007 1237 160 65 169 chr1 236697814 236698151 -5966202 + AluJo SINE Alu 1 302 0 4255 243 64 25 chr1 236698151 236698699 -5965654 + L1MCa LINE L1 3419 3944 -2482 668 159 121 30 chr1 236698710 236698842 -5965511 - AluY SINE Alu -15 296 153 568 245 38 27 chr1 236701657 236701841 -5962512 - MIR SINE MIR -68 194 9 523 311 0 7 chr1 236702031 236702179 -5962174 + MIR SINE MIR 14 160 -102 378 0 0 0 chr1 236702199 236702241 -5962112 + (TG)n Simple_repeat Simple_repeat 1 42 0 246 128 0 0 chr1 236705152 236705191 -5959162 + (A)n Simple_repeat Simple_repeat 1 39 0 275 212 61 0 chr1 236705740 236705806 -5958547 - MIR SINE MIR -89 173 104 447 278 62 28 chr1 236706109 236706285 -5958068 - MARNA DNA Mariner -9 577 396 192 277 229 0 chr1 236706629 236706712 -5957641 + MIR SINE MIR 148 249 -13 1285 131 15 15 chr1 236707053 236707252 -5957101 + L1PB3 LINE L1 5949 6147 -7 112 0 0 0 chr1 236707252 236707364 -5956989 + AT_rich Low_complexity Low_complexity 1 112 0 3585 224 64 14 chr1 236707401 236708466 -5955887 - L1MCa LINE L1 -2905 3521 2372 2597 59 0 0 chr1 236708466 236708773 -5955580 - AluY SINE Alu -4 307 1 3585 224 64 14 chr1 236708773 236709029 -5955324 - L1MCa LINE L1 -4054 2372 2130 648 273 67 8 chr1 236709030 236709297 -5955056 - L1M4 LINE L1 -3464 2682 2400 4869 230 32 47 chr1 236709316 236710197 -5954156 + L1 LINE L1 3131 4017 -2129 228 114 0 0 chr1 236710197 236710232 -5954121 + U3 snRNA snRNA 1 35 -182 4869 230 32 47 chr1 236710232 236710804 -5953549 + L1 LINE L1 4017 4596 -1550 229 224 20 0 chr1 236711051 236711100 -5953253 - MER116 DNA Mariner -5 75 26 1645 167 40 11 chr1 236711101 236711376 -5952977 + AluJb SINE Alu 3 285 -27 207 114 0 0 chr1 236711376 236711411 -5952942 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 2345 209 20 4 chr1 236711641 236712195 -5952158 - L1P LINE L1 -2832 3314 2752 5944 129 31 2 chr1 236712195 236714158 -5950195 + L1PA15 LINE L1 4189 6158 -7 207 0 0 0 chr1 236714522 236714545 -5949808 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 351 78 0 0 chr1 236714544 236714595 -5949758 + (TG)n Simple_repeat Simple_repeat 2 52 0 603 175 114 9 chr1 236714617 236714731 -5949622 - FRAM SINE Alu -30 146 21 292 296 53 15 chr1 236714900 236715102 -5949251 + L1MA10 LINE L1 5891 6259 -66 600 282 0 33 chr1 236715119 236715300 -5949053 - AluJo SINE Alu -17 295 121 347 232 67 125 chr1 236715350 236715574 -5948779 - L2 LINE L2 -90 3223 3013 228 270 95 0 chr1 236718172 236718235 -5946118 + MER113 DNA MER1_type? 451 519 -2 825 280 105 32 chr1 236719135 236719700 -5944653 + L2 LINE L2 2710 3313 0 183 319 83 0 chr1 236720191 236720263 -5944090 - L2 LINE L2 -45 3227 3150 283 366 79 24 chr1 236720266 236720558 -5943795 + L2 LINE L2 2952 3259 -13 211 173 160 40 chr1 236723599 236723674 -5940679 + MIR3 SINE MIR 101 184 -24 313 247 0 8 chr1 236723828 236723898 -5940455 - MIR SINE MIR -137 71 4 182 273 15 30 chr1 236729083 236729149 -5935204 + L3b LINE CR1 1302 1366 -217 37 0 0 0 chr1 236730740 236730777 -5933576 + AT_rich Low_complexity Low_complexity 1 37 0 2155 104 23 0 chr1 236736930 236737229 -5927124 + AluSq SINE Alu 1 306 -7 2321 107 0 7 chr1 236737230 236737538 -5926815 + AluSx SINE Alu 1 306 -6 197 217 17 33 chr1 236739223 236739283 -5925070 - MIR SINE MIR -115 147 89 238 293 13 13 chr1 236739353 236739428 -5924925 - MER5A DNA MER1_type 0 189 115 290 319 162 15 chr1 236740014 236740218 -5924135 + MIR SINE MIR 21 254 -8 332 346 88 54 chr1 236741986 236742226 -5922127 + L1MDb LINE L1 510 757 -5652 2439 70 10 16 chr1 236743604 236743918 -5920435 - AluSp SINE Alu -1 312 1 1897 130 42 0 chr1 236743927 236744211 -5920142 - AluSg SINE Alu -14 296 1 573 232 95 6 chr1 236744526 236744694 -5919659 - MIR SINE MIR -65 197 15 2403 89 0 0 chr1 236744769 236745071 -5919282 - AluSg SINE Alu -8 302 1 203 356 82 26 chr1 236745071 236745265 -5919088 - L2 LINE L2 -27 3245 3041 416 229 191 6 chr1 236745301 236745458 -5918895 - MIR SINE MIR -19 243 58 188 189 0 27 chr1 236745905 236745942 -5918411 + MER5A DNA MER1_type 50 85 -104 631 260 103 5 chr1 236748310 236748514 -5915839 - MIR SINE MIR -8 254 31 205 288 0 0 chr1 236748565 236748631 -5915722 + L2 LINE L2 2071 2136 -1178 2313 79 20 0 chr1 236749104 236749409 -5914944 + AluY SINE Alu 1 311 0 1205 197 89 26 chr1 236749707 236749845 -5914508 + AluJo SINE Alu 2 130 -182 2325 83 20 3 chr1 236749845 236750146 -5914207 + AluSx SINE Alu 1 306 -6 1205 197 89 26 chr1 236750146 236750276 -5914077 + AluJo SINE Alu 130 287 -25 1517 137 52 12 chr1 236750361 236750609 -5913744 - Tigger2 DNA MER2_type 0 2718 2461 4758 143 18 7 chr1 236750672 236751407 -5912946 - Tigger2 DNA MER2_type -1974 744 2 249 368 53 0 chr1 236751449 236751544 -5912809 + L2 LINE L2 3182 3281 -32 216 0 0 0 chr1 236751544 236751568 -5912785 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 229 306 62 42 chr1 236751582 236751726 -5912627 + MIR SINE MIR 70 216 -46 853 186 88 16 chr1 236751790 236751983 -5912370 + MER58C DNA MER1_type 9 215 0 430 329 8 0 chr1 236752518 236752659 -5911694 + MIR SINE MIR 13 153 -63 361 280 129 44 chr1 236752650 236752875 -5911478 - MIR SINE MIR 0 262 19 * 181 400 13 0 chr1 236752838 236752913 -5911440 + MIR SINE MIR 45 120 -142 * 330 204 0 0 chr1 236753696 236753750 -5910603 - L2 LINE L2 -2 3270 3217 1159 195 18 9 chr1 236753847 236754068 -5910285 + MLT2D LTR ERVL 3 225 -189 329 267 39 18 chr1 236755325 236755474 -5908879 + L1ME4a LINE L1 1203 6099 0 664 179 24 24 chr1 236755516 236755639 -5908714 + L1MC1 LINE L1 6210 6332 -1 200 319 144 19 chr1 236755855 236756015 -5908338 - MIR SINE MIR -7 255 76 330 260 193 7 chr1 236756176 236756326 -5908027 + L1ME4a LINE L1 5579 5756 -365 833 222 150 11 chr1 236756350 236756616 -5907737 + L1ME4a LINE L1 5816 6118 -3 205 234 0 21 chr1 236759187 236759234 -5905119 - MIR SINE MIR 0 262 217 491 265 44 78 chr1 236759463 236759727 -5904626 - MIR SINE MIR -3 259 10 350 265 272 7 chr1 236760128 236760264 -5904089 + MIR SINE MIR 20 191 -71 317 336 48 16 chr1 236761013 236761138 -5903215 - MIR3 SINE MIR -39 169 41 682 210 0 0 chr1 236765170 236765289 -5899064 + FLAM_A SINE Alu 3 121 -12 565 232 202 8 chr1 236766563 236766830 -5897523 - MER5C DNA MER1_type -4 320 2 837 137 93 81 chr1 236767082 236767243 -5897110 - FRAM SINE Alu -7 169 7 1115 153 0 66 chr1 236767490 236767686 -5896667 - AluJo SINE Alu -129 183 1 239 343 64 29 chr1 236767723 236767895 -5896458 + MLT1K LTR MaLR 1 178 -410 2063 130 0 10 chr1 236768249 236768548 -5895805 + AluSx SINE Alu 1 296 -16 234 91 0 0 chr1 236769463 236769496 -5894857 + (TC)n Simple_repeat Simple_repeat 1 33 0 2049 96 0 7 chr1 236769498 236769769 -5894584 - AluSc SINE Alu -16 293 25 551 107 0 0 chr1 236769769 236769844 -5894509 - AluS SINE Alu -237 76 2 721 315 64 0 chr1 236769953 236770188 -5894165 + MIR SINE MIR 5 254 -8 2200 98 3 0 chr1 236770290 236770577 -5893776 - AluSp SINE Alu -25 288 1 2099 126 0 10 chr1 236770845 236771155 -5893198 - AluJb SINE Alu -2 310 4 246 292 54 39 chr1 236771176 236771306 -5893047 + L2 LINE L2 3141 3272 0 738 215 0 0 chr1 236771473 236771603 -5892750 - FLAM_A SINE Alu -3 130 1 228 35 0 0 chr1 236771645 236771674 -5892679 + (TG)n Simple_repeat Simple_repeat 1 29 0 525 254 45 57 chr1 236772823 236773000 -5891353 - MIR3 SINE MIR -6 202 28 294 333 81 43 chr1 236773615 236773658 -5890695 + L2 LINE L2 2584 2624 -690 1010 229 200 0 chr1 236773658 236773938 -5890415 - MER58B DNA MER1_type -1 340 5 294 333 81 43 chr1 236773938 236774152 -5890201 + L2 LINE L2 2624 2851 -463 191 318 15 76 chr1 236774179 236774311 -5890042 + L2 LINE L2 2914 3037 -235 431 336 22 0 chr1 236774474 236774611 -5889742 + L2 LINE L2 3133 3272 0 1629 187 14 10 chr1 236774663 236774957 -5889396 - AluJo SINE Alu -17 295 1 201 89 67 22 chr1 236776149 236776194 -5888159 + CT-rich Low_complexity Low_complexity 2 48 0 216 135 0 0 chr1 236776683 236776720 -5887633 + (TG)n Simple_repeat Simple_repeat 2 38 0 31 44 0 0 chr1 236778301 236778346 -5886007 + AT_rich Low_complexity Low_complexity 1 45 0 26 93 0 0 chr1 236778903 236778978 -5885375 + AT_rich Low_complexity Low_complexity 1 75 0 505 256 128 27 chr1 236779825 236780044 -5884309 + MIR SINE MIR 8 248 -14 571 250 125 27 chr1 236780884 236781339 -5883014 - HAL1 LINE L1 -10 2497 1984 1445 293 19 14 chr1 236781499 236781984 -5882369 - HAL1 LINE L1 -734 1773 1287 518 294 77 41 chr1 236782038 236782402 -5881951 - HAL1 LINE L1 -1317 1190 814 269 215 0 131 chr1 236782755 236782862 -5881491 + MLT1H LTR MaLR 421 513 -36 787 226 17 11 chr1 236783095 236783272 -5881081 + MER112 DNA MER1_type 1 178 -82 300 263 0 25 chr1 236783288 236783368 -5880985 + L1MC4 LINE L1 6614 6691 -1351 1077 187 0 16 chr1 236783371 236783553 -5880800 - AluJo SINE Alu -133 179 1 24 32 0 0 chr1 236783643 236783674 -5880679 + AT_rich Low_complexity Low_complexity 1 31 0 748 212 62 17 chr1 236784303 236784482 -5879871 - MER3 DNA MER1_type -22 187 1 801 265 64 16 chr1 236784734 236784983 -5879370 - MIR SINE MIR -1 261 1 310 394 11 6 chr1 236787618 236787798 -5876555 - L3 LINE CR1 -1015 562 382 1807 152 32 26 chr1 236788025 236788334 -5876019 - AluJb SINE Alu -1 311 1 199 202 44 0 chr1 236788443 236788557 -5875796 + (TA)n Simple_repeat Simple_repeat 1 119 0 25 0 0 0 chr1 236789216 236789241 -5875112 + AT_rich Low_complexity Low_complexity 1 25 0 226 216 14 95 chr1 236789301 236789375 -5874978 - L2 LINE L2 -4 3309 3242 198 224 0 0 chr1 236789403 236789452 -5874901 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr1 236790034 236790058 -5874295 + AT_rich Low_complexity Low_complexity 1 24 0 253 327 135 13 chr1 236791018 236791174 -5873179 - MIR3 SINE MIR -20 188 14 21 0 0 0 chr1 236792956 236792977 -5871376 + AT_rich Low_complexity Low_complexity 1 21 0 436 354 139 32 chr1 236793113 236793610 -5870743 + L3 LINE CR1 608 1157 -420 528 358 28 0 chr1 236793636 236793851 -5870502 - MIR SINE MIR 0 262 42 320 310 133 43 chr1 236794309 236794777 -5869576 - L2 LINE L2 -45 3268 2746 180 0 0 0 chr1 236794797 236794817 -5869536 + (CAATG)n Simple_repeat Simple_repeat 5 24 0 315 296 117 25 chr1 236794911 236795107 -5869246 - L2 LINE L2 -177 3136 2923 242 355 14 21 chr1 236795140 236795281 -5869072 + L3 LINE CR1 697 836 -741 438 234 80 57 chr1 236795319 236795403 -5868950 - L2 LINE L2 -519 2795 2714 2098 115 0 0 chr1 236795403 236795724 -5868629 - AluSg SINE Alu 0 321 1 438 234 80 57 chr1 236795724 236795813 -5868540 - L2 LINE L2 -600 2714 2617 1093 186 0 32 chr1 236795814 236796034 -5868319 + AluY SINE Alu 1 213 -98 2070 119 0 14 chr1 236796525 236796811 -5867542 + AluSx SINE Alu 1 282 -30 233 220 0 17 chr1 236796812 236796871 -5867482 + L1ME LINE L1 5435 5492 -672 497 187 18 3 chr1 236797349 236797458 -5866895 - L1MB7 LINE L1 0 6184 6077 278 306 14 0 chr1 236797470 236797542 -5866811 - MER91B DNA MER1_type -117 73 1 3908 183 27 41 chr1 236797759 236799036 -5865317 - L1MB8 LINE L1 -91 6087 4815 194 338 59 0 chr1 236799236 236799304 -5865049 + MIR3 SINE MIR 114 185 -23 2196 128 0 0 chr1 236799403 236799709 -5864644 - AluY SINE Alu -5 306 1 22 0 0 0 chr1 236799783 236799805 -5864548 + AT_rich Low_complexity Low_complexity 1 22 0 1406 202 7 47 chr1 236799806 236800103 -5864250 - AluJb SINE Alu -26 286 2 1663 163 0 14 chr1 236800899 236801175 -5863178 + AluJo SINE Alu 3 274 -38 264 130 0 0 chr1 236801446 236801492 -5862861 + (GA)n Simple_repeat Simple_repeat 1 46 0 286 338 138 7 chr1 236802604 236802749 -5861604 - MIR3 SINE MIR -15 193 30 2390 106 0 0 chr1 236803286 236803598 -5860755 - AluSx SINE Alu 0 312 1 257 336 59 8 chr1 236805392 236805511 -5858842 + L2 LINE L2 3137 3261 -11 364 355 104 11 chr1 236805996 236806275 -5858078 - L3b LINE CR1 -126 1457 1153 2108 109 3 32 chr1 236806289 236806602 -5857751 + AluSx SINE Alu 1 304 -8 1172 224 14 0 chr1 236807319 236807538 -5856815 - MER58A DNA MER1_type -1 223 2 662 266 102 62 chr1 236807659 236807781 -5856572 + MER45C DNA AcHobo 7 123 -830 193 29 59 0 chr1 236807781 236807815 -5856538 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2183 71 3 44 chr1 236807821 236808115 -5856238 - AluSp SINE Alu -31 282 1 662 266 102 62 chr1 236808115 236808260 -5856093 + MER45C DNA AcHobo 127 292 -661 2432 43 3 46 chr1 236808457 236808782 -5855571 + AluY SINE Alu 1 311 0 695 140 0 18 chr1 236808822 236808936 -5855417 + MER45 DNA AcHobo 1447 1558 -23 307 264 95 43 chr1 236809388 236809619 -5854734 + L1MC5 LINE L1 7561 7803 -158 210 269 15 46 chr1 236809619 236809749 -5854604 + GA-rich Low_complexity Low_complexity 4 129 0 185 414 0 0 chr1 236812750 236812849 -5851504 - MIR3 SINE MIR -23 185 87 892 229 0 0 chr1 236813680 236813850 -5850503 + FAM SINE Alu 1 170 -5 21 0 0 0 chr1 236813864 236813885 -5850468 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr1 236814038 236814089 -5850264 + AT_rich Low_complexity Low_complexity 1 51 0 200 343 15 0 chr1 236814436 236814503 -5849850 - L3 LINE CR1 -14 1563 1496 258 346 98 8 chr1 236815347 236815480 -5848873 + L2 LINE L2 3122 3266 -6 233 303 7 86 chr1 236816255 236816407 -5847946 + L2 LINE L2 2943 3082 -190 253 246 0 0 chr1 236818370 236818427 -5845926 + A-rich Low_complexity Low_complexity 1 57 0 1474 163 62 40 chr1 236818591 236818867 -5845486 + AluJo SINE Alu 1 282 -30 280 218 35 58 chr1 236818910 236818997 -5845356 - MIR SINE MIR -121 141 57 385 335 140 0 chr1 236819089 236819289 -5845064 - MIR SINE MIR -6 256 29 5264 150 22 14 chr1 236819456 236820060 -5844293 + L1PA16 LINE L1 4811 5409 -757 1896 138 159 5 chr1 236820060 236820431 -5843922 + MSTA LTR MaLR 1 428 0 5264 150 22 14 chr1 236820431 236821157 -5843196 + L1PA16 LINE L1 5409 6145 -21 180 0 0 0 chr1 236821162 236821182 -5843171 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 251 279 15 0 chr1 236821705 236821773 -5842580 - L2 LINE L2 0 3313 3245 1613 181 14 0 chr1 236821918 236822224 -5842129 + AluJb SINE Alu 1 310 0 545 315 117 44 chr1 236822250 236822815 -5841538 - L2 LINE L2 -338 2976 2371 225 317 117 21 chr1 236822910 236823055 -5841298 + L2 LINE L2 2222 2380 -934 327 365 43 19 chr1 236823090 236823301 -5841052 - L2 LINE L2 -1360 1954 1739 641 231 94 6 chr1 236823311 236823471 -5840882 - MER5B DNA MER1_type -2 176 3 215 360 129 26 chr1 236823478 236823859 -5840494 - L2 LINE L2 -1596 1718 1299 718 355 57 13 chr1 236824364 236824993 -5839360 + L2 LINE L2 2596 3257 -56 294 326 61 0 chr1 236825268 236825366 -5838987 + L2 LINE L2 3169 3272 0 243 229 0 0 chr1 236827067 236827128 -5837225 - L1PB4 LINE L1 -4 6152 6092 21 36 0 0 chr1 236827631 236827659 -5836694 + AT_rich Low_complexity Low_complexity 1 28 0 2124 108 6 16 chr1 236828229 236828544 -5835809 + AluSx SINE Alu 1 312 0 2386 64 0 0 chr1 236828604 236828919 -5835434 + AluY SINE Alu 1 315 0 194 50 0 0 chr1 236829249 236829548 -5834805 + AT_rich Low_complexity Low_complexity 1 299 0 300 98 0 0 chr1 236830515 236830566 -5833787 + L1MA4A LINE L1 6244 6294 -9 574 281 100 9 chr1 236830962 236831172 -5833181 - MIR SINE MIR -10 252 24 29 60 0 0 chr1 236831557 236831607 -5832746 + AT_rich Low_complexity Low_complexity 1 50 0 646 223 108 0 chr1 236832182 236832339 -5832014 + FAM SINE Alu 2 175 0 313 342 88 64 chr1 236832345 236833316 -5831037 - L2 LINE L2 -705 2609 1616 2442 78 0 0 chr1 236833656 236833949 -5830404 - AluSc SINE Alu -16 293 1 232 354 10 40 chr1 236834131 236834230 -5830123 - L2 LINE L2 -1 3312 3217 427 202 143 17 chr1 236834246 236834365 -5829988 + LTR45 LTR ERV1 1 134 -391 353 85 0 17 chr1 236834384 236834443 -5829910 - L1MA1 LINE L1 0 6302 6245 666 201 21 14 chr1 236834543 236834687 -5829666 + LTR45 LTR ERV1 381 525 0 2785 143 85 19 chr1 236834703 236834855 -5829498 + L1PA16 LINE L1 5583 5723 -443 2114 128 3 0 chr1 236834855 236835145 -5829208 + AluSx SINE Alu 1 291 -21 2785 143 85 19 chr1 236835145 236835531 -5828822 + L1PA16 LINE L1 5723 6157 -9 1092 175 47 14 chr1 236835606 236835817 -5828536 + MER20 DNA MER1_type 2 219 0 655 231 50 39 chr1 236836085 236836267 -5828086 - MIR SINE MIR -77 185 2 216 378 131 10 chr1 236836283 236836772 -5827581 - L2 LINE L2 -429 2885 2338 2223 122 3 0 chr1 236837131 236837443 -5826910 + AluSq SINE Alu 1 313 0 1767 155 122 18 chr1 236837528 236837914 -5826439 + MSTB LTR MaLR 1 426 0 3290 107 2 59 chr1 236838307 236838868 -5825485 - L1PA14 LINE L1 0 6161 5633 563 216 78 9 chr1 236838916 236839032 -5825321 + MER3 DNA MER1_type 1 124 -85 2330 100 0 0 chr1 236839211 236839510 -5824843 + AluSx SINE Alu 3 301 -11 2256 113 0 0 chr1 236841820 236842111 -5822242 + AluSx SINE Alu 1 291 -21 213 264 97 14 chr1 236842212 236842284 -5822069 + L2 LINE L2 3218 3295 -18 2248 113 3 0 chr1 236844105 236844406 -5819947 - AluSx SINE Alu -10 302 1 963 132 0 0 chr1 236845062 236845198 -5819155 - AluJb SINE Alu -176 136 1 24 0 0 0 chr1 236845274 236845298 -5819055 + AT_rich Low_complexity Low_complexity 1 24 0 499 305 128 27 chr1 236845489 236846070 -5818283 - L1MC4a LINE L1 -389 5773 5290 414 312 130 4 chr1 236846096 236846343 -5818010 - L1MC4a LINE L1 -892 5254 4977 380 258 93 40 chr1 236846379 236846530 -5817823 + MIR SINE MIR 94 252 -10 2353 95 0 0 chr1 236846668 236846972 -5817381 + AluSc SINE Alu 1 304 -5 1482 181 61 25 chr1 236847035 236847312 -5817041 + AluJo SINE Alu 1 287 -25 914 279 29 4 chr1 236847417 236847657 -5816696 - MIR SINE MIR -10 252 7 280 224 153 12 chr1 236848331 236848416 -5815937 - MIR3 SINE MIR -1 207 111 183 42 0 0 chr1 236849754 236849778 -5814575 + (A)n Simple_repeat Simple_repeat 1 24 0 194 88 0 29 chr1 236850520 236850554 -5813799 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 2197 130 10 0 chr1 236850722 236851023 -5813330 - AluSx SINE Alu -8 304 1 25 75 0 0 chr1 236851103 236851156 -5813197 + AT_rich Low_complexity Low_complexity 1 53 0 2501 79 0 0 chr1 236851501 236851805 -5812548 - AluSc SINE Alu -5 304 1 21 57 0 0 chr1 236852160 236852195 -5812158 + AT_rich Low_complexity Low_complexity 1 35 0 200 175 0 0 chr1 236852565 236852605 -5811748 - L2 LINE L2 0 3313 3274 17144 127 12 19 chr1 236852676 236852745 -5811608 - Tigger2 DNA MER2_type 0 2718 2650 2219 116 0 0 chr1 236852745 236853039 -5811314 - AluSx SINE Alu -18 294 1 17144 127 12 19 chr1 236853039 236854559 -5809794 - Tigger2 DNA MER2_type -68 2650 1154 2113 121 0 0 chr1 236854559 236854864 -5809489 - AluSx SINE Alu 0 305 1 17144 127 12 19 chr1 236854864 236856010 -5808343 - Tigger2 DNA MER2_type -1564 1154 1 193 304 35 35 chr1 236856148 236856263 -5808090 - L2 LINE L2 -385 2929 2815 803 176 27 143 chr1 236856622 236856667 -5807686 + L1ME3A LINE L1 2106 2155 -4241 2234 112 0 0 chr1 236856667 236856962 -5807391 + AluSg SINE Alu 1 295 -15 803 176 27 143 chr1 236856962 236857116 -5807237 + L1ME3A LINE L1 2155 2245 -4151 2162 110 0 0 chr1 236857116 236857398 -5806955 + AluSq SINE Alu 1 282 -31 803 176 27 143 chr1 236857398 236857567 -5806786 + L1ME3A LINE L1 2245 2432 -3964 1584 245 113 49 chr1 236857577 236858213 -5806140 + L1ME3A LINE L1 4376 4970 -1269 1754 95 157 0 chr1 236858213 236858475 -5805878 + AluSq SINE Alu 1 303 0 2213 116 0 7 chr1 236858479 236858781 -5805572 + AluSx SINE Alu 1 300 -12 1584 245 113 49 chr1 236858781 236859645 -5804708 + L1ME3A LINE L1 4972 5985 -254 704 269 93 89 chr1 236859982 236860104 -5804249 - L2 LINE L2 -1305 2009 1889 2367 30 44 10 chr1 236860104 236860400 -5803953 + AluY SINE Alu 1 306 -5 704 269 93 89 chr1 236860400 236860640 -5803713 - L2 LINE L2 -1425 1889 1642 1969 167 0 0 chr1 236860640 236860951 -5803402 + AluSx SINE Alu 1 311 -1 704 269 93 89 chr1 236860951 236861059 -5803294 - L2 LINE L2 -1672 1642 1536 2312 104 0 0 chr1 236861400 236861708 -5802645 + AluSg SINE Alu 1 308 -2 1783 243 77 44 chr1 236862200 236862409 -5801944 + L1M4c LINE L1 611 812 -5766 342 45 0 0 chr1 236862409 236862453 -5801900 + (TC)n Simple_repeat Simple_repeat 1 44 0 1783 243 77 44 chr1 236862453 236863104 -5801249 + L1M4c LINE L1 812 1862 -4716 2743 166 45 11 chr1 236863104 236863659 -5800694 + L1MB4 LINE L1 5607 6180 0 1783 243 77 44 chr1 236863659 236863745 -5800608 + L1M4c LINE L1 1862 1944 -4634 672 230 74 83 chr1 236864197 236864427 -5799926 - MIR SINE MIR 0 262 35 429 163 11 98 chr1 236864427 236864519 -5799834 + MER21B LTR ERV1 13 96 -767 2225 257 32 29 chr1 236864526 236865269 -5799084 + MER21B LTR ERV1 19 809 -54 404 326 23 0 chr1 236865427 236865556 -5798797 - Charlie8 DNA MER1_type -2153 264 133 218 205 229 48 chr1 236865723 236865806 -5798547 - L2 LINE L2 0 3272 3175 604 366 44 64 chr1 236865920 236866376 -5797977 - L2 LINE L2 -14 3258 2812 703 241 38 76 chr1 236867206 236867442 -5796911 + MIR SINE MIR 36 262 0 2999 90 40 25 chr1 236867445 236867891 -5796462 + MLT2A2 LTR ERVL 1 453 0 2366 84 3 0 chr1 236867913 236868209 -5796144 - AluY SINE Alu -14 297 1 1531 189 26 29 chr1 236868446 236868753 -5795600 - AluJb SINE Alu -6 306 1 367 274 30 44 chr1 236869844 236869979 -5794374 + MER5A DNA MER1_type 6 138 -40 21 36 0 0 chr1 236870504 236870532 -5793821 + AT_rich Low_complexity Low_complexity 1 28 0 3727 217 65 106 chr1 236871453 236871759 -5792594 + L1MC2 LINE L1 5 322 -6242 2289 90 7 0 chr1 236871759 236872048 -5792305 + AluSg SINE Alu 3 293 -17 3727 217 65 106 chr1 236872048 236872892 -5791461 + L1MC2 LINE L1 322 1199 -5365 2267 98 0 10 chr1 236872892 236873198 -5791155 + AluSx SINE Alu 1 303 -9 3727 217 65 106 chr1 236873198 236873497 -5790856 + L1MC2 LINE L1 1199 1509 -5055 261 98 0 0 chr1 236873497 236873538 -5790815 + (TA)n Simple_repeat Simple_repeat 2 42 0 3727 217 65 106 chr1 236873538 236873788 -5790565 + L1MC2 LINE L1 1509 1768 -4796 2277 99 0 10 chr1 236873788 236874101 -5790252 + AluSx SINE Alu 1 310 -2 3727 217 65 106 chr1 236874101 236874745 -5789608 + L1MC2 LINE L1 1768 2400 -4164 1068 149 11 0 chr1 236874778 236874952 -5789401 + AluSg/x SINE Alu 125 300 -12 5119 223 50 53 chr1 236874952 236874992 -5789361 + L1MC2 LINE L1 2422 2461 -4103 1742 150 38 20 chr1 236874992 236875285 -5789068 + AluJo SINE Alu 4 301 -11 5119 223 50 53 chr1 236875285 236875502 -5788851 + L1MC2 LINE L1 2461 2677 -3887 885 142 0 15 chr1 236875502 236875636 -5788717 + FLAM_A SINE Alu 2 133 0 5119 223 50 53 chr1 236875636 236877332 -5787021 + L1MC2 LINE L1 2677 4371 -2193 1341 200 0 29 chr1 236877334 236877574 -5786779 + Tigger5 DNA MER2_type 1 233 -2090 402 167 0 0 chr1 236877580 236877640 -5786713 + Tigger5 DNA MER2_type 2264 2323 0 2896 199 52 58 chr1 236877641 236877845 -5786508 + L1MC2 LINE L1 4373 4577 -1987 1517 198 40 0 chr1 236877845 236877965 -5786388 + AluJb SINE Alu 1 115 -197 180 0 0 0 chr1 236877965 236877985 -5786368 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1517 198 40 0 chr1 236877985 236878142 -5786211 + AluJb SINE Alu 115 289 -23 2896 199 52 58 chr1 236878142 236878417 -5785936 + L1MC2 LINE L1 4577 4852 -1712 2188 117 0 0 chr1 236878417 236878707 -5785646 + AluSg SINE Alu 1 290 -20 2896 199 52 58 chr1 236878707 236879131 -5785222 + L1MC2 LINE L1 4852 5272 -1292 5584 184 18 16 chr1 236879143 236880469 -5783884 + L1MC2 LINE L1 5423 6753 -9 2217 98 7 0 chr1 236880774 236881079 -5783274 + AluSc SINE Alu 1 307 -2 312 158 0 0 chr1 236881614 236881671 -5782682 + GA-rich Low_complexity Low_complexity 4 60 0 222 62 0 0 chr1 236882403 236882435 -5781918 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2209 160 70 5 chr1 236882556 236882956 -5781397 + MSTB LTR MaLR 1 426 0 2046 138 0 3 chr1 236885092 236885382 -5778971 + AluSx SINE Alu 1 289 -23 28 29 0 0 chr1 236885382 236885417 -5778936 + AT_rich Low_complexity Low_complexity 1 35 0 47 19 0 0 chr1 236885557 236885611 -5778742 + AT_rich Low_complexity Low_complexity 1 54 0 220 386 86 50 chr1 236886019 236886356 -5777997 - L2 LINE L2 0 3272 2924 257 247 27 14 chr1 236886983 236887056 -5777297 + L3 LINE CR1 1480 1553 -24 314 203 79 134 chr1 236887127 236887329 -5777024 + L1MDb LINE L1 362 552 -5857 578 82 24 0 chr1 236887548 236887633 -5776720 + AluSc SINE Alu 214 300 -9 554 259 30 107 chr1 236887678 236887875 -5776478 + MLT1H1 LTR MaLR 76 300 -249 2203 86 3 20 chr1 236889315 236889619 -5774734 - AluSp SINE Alu -12 301 3 2223 101 3 0 chr1 236889675 236889972 -5774381 - AluY SINE Alu -12 299 2 1172 174 94 42 chr1 236889973 236890260 -5774093 - AluSp SINE Alu -1 302 1 1854 170 6 10 chr1 236890316 236890627 -5773726 + AluSx SINE Alu 3 312 0 907 172 115 38 chr1 236890633 236890894 -5773459 + L1MA7 LINE L1 6011 6291 0 2258 91 7 3 chr1 236891106 236891402 -5772951 - AluSx SINE Alu -15 297 1 2338 92 3 3 chr1 236892295 236892600 -5771753 - AluSp SINE Alu -8 305 1 696 174 54 20 chr1 236893557 236893706 -5770647 - MER20 DNA MER1_type -3 216 63 2243 111 3 0 chr1 236894526 236894823 -5769530 + AluSx SINE Alu 1 298 -14 1840 90 8 0 chr1 236894823 236895056 -5769297 + AluSp SINE Alu 1 236 -77 201 74 0 0 chr1 236895057 236895084 -5769269 + (A)n Simple_repeat Simple_repeat 1 27 0 288 282 26 0 chr1 236895709 236895787 -5768566 + GA-rich Low_complexity Low_complexity 1 80 0 394 291 40 40 chr1 236895917 236896068 -5768285 - MIR3 SINE MIR -47 161 11 2087 97 3 50 chr1 236897075 236897394 -5766959 - AluSq SINE Alu -9 304 1 2435 51 0 22 chr1 236897498 236897813 -5766540 - AluY SINE Alu -3 308 1 215 159 23 0 chr1 236898044 236898088 -5766265 + A-rich Low_complexity Low_complexity 3 47 0 2158 113 3 0 chr1 236898228 236898521 -5765832 + AluSx SINE Alu 1 294 -18 21 57 0 0 chr1 236898814 236898849 -5765504 + AT_rich Low_complexity Low_complexity 1 35 0 181 170 85 21 chr1 236899365 236899412 -5764941 - MIR SINE MIR 0 262 213 441 257 71 21 chr1 236899418 236899558 -5764795 + L2 LINE L2 3136 3282 -31 272 250 135 20 chr1 236899656 236899804 -5764549 - MER112 DNA MER1_type -95 165 1 197 233 0 0 chr1 236899804 236899847 -5764506 - MIR SINE MIR -55 207 165 457 306 148 6 chr1 236900064 236900247 -5764106 + MIR SINE MIR 12 220 -42 213 121 0 0 chr1 236901774 236901807 -5762546 + (CGA)n Simple_repeat Simple_repeat 1 33 0 352 331 50 69 chr1 236901909 236902269 -5762084 + L1M2 LINE L1 763 1115 -5734 315 0 0 0 chr1 236902711 236902746 -5761607 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 240 232 80 71 chr1 236903442 236903554 -5760799 - MIR SINE MIR -120 142 30 329 325 85 25 chr1 236905330 236905530 -5758823 - MIR SINE MIR 0 262 51 486 331 224 36 chr1 236905614 236906145 -5758208 - L3 LINE CR1 -7 1570 940 654 298 94 16 chr1 236906465 236906720 -5757633 - L3 LINE CR1 -691 886 612 1940 118 40 3 chr1 236906835 236907132 -5757221 - AluSc SINE Alu -1 308 1 203 250 132 0 chr1 236907243 236907319 -5757034 - L2 LINE L2 -166 3147 3062 1711 178 29 0 chr1 236907476 236907790 -5756563 - AluJb SINE Alu 0 322 1 453 310 197 22 chr1 236907897 236908329 -5756024 - L2 LINE L2 -251 3062 2539 1062 263 104 20 chr1 236908345 236908699 -5755654 - L2 LINE L2 -961 2353 1970 2153 116 3 3 chr1 236909281 236909573 -5754780 + AluSq SINE Alu 1 292 -21 2019 109 19 0 chr1 236909956 236910223 -5754130 - AluSq SINE Alu -19 294 23 193 385 51 17 chr1 236910358 236910475 -5753878 - L2 LINE L2 -16 3256 3136 4421 200 52 26 chr1 236911916 236912247 -5752106 - Charlie1a DNA MER1_type -1547 1214 893 2210 113 3 0 chr1 236912247 236912549 -5751804 + AluSp SINE Alu 1 303 -10 4421 200 52 26 chr1 236912549 236913354 -5750999 - Charlie1a DNA MER1_type -1868 893 49 494 266 45 50 chr1 236913409 236913608 -5750745 + MIR SINE MIR 9 206 -56 309 244 191 67 chr1 236915002 236915285 -5749068 + L1M4c LINE L1 88 405 -5979 580 272 16 25 chr1 236915367 236915610 -5748743 + L1M4c LINE L1 554 794 -5486 517 188 4 14 chr1 236915610 236915862 -5748491 + AluJ SINE Alu 3 304 -8 2713 232 140 29 chr1 236915864 236916693 -5747660 + L1M4c LINE L1 774 1510 -4874 447 106 0 0 chr1 236916693 236916759 -5747594 + (CAT)n Simple_repeat Simple_repeat 1 66 0 2713 232 140 29 chr1 236916759 236917367 -5746986 + L1M4c LINE L1 1510 2370 -4014 270 105 0 0 chr1 236917367 236917405 -5746948 + Alu SINE Alu 2 39 -263 1722 181 9 19 chr1 236917488 236917803 -5746550 - AluJb SINE Alu 0 312 1 197 369 12 12 chr1 236918406 236918490 -5745863 + L2 LINE L2 3189 3272 0 2400 79 0 0 chr1 236918990 236919280 -5745073 + AluY SINE Alu 1 290 -21 234 0 0 0 chr1 236919280 236919306 -5745047 + (TA)n Simple_repeat Simple_repeat 2 27 0 283 261 0 0 chr1 236920407 236920472 -5743881 - MIR SINE MIR -1 261 197 255 297 127 74 chr1 236921593 236921822 -5742531 - MIR SINE MIR -11 251 11 24 0 0 0 chr1 236922748 236922772 -5741581 + AT_rich Low_complexity Low_complexity 1 24 0 842 177 86 6 chr1 236922780 236922955 -5741398 + MER3 DNA MER1_type 1 189 -20 2060 110 0 10 chr1 236923158 236923449 -5740904 + AluSx SINE Alu 1 288 -24 1347 181 11 34 chr1 236923745 236924011 -5740342 + AluJb SINE Alu 40 299 -13 193 385 51 17 chr1 236925337 236925454 -5738899 + L2 LINE L2 3136 3256 -16 2019 109 19 0 chr1 236925589 236925856 -5738497 + AluSq SINE Alu 23 294 -19 2192 113 3 3 chr1 236926239 236926531 -5737822 - AluSq SINE Alu -21 292 1 2242 97 0 7 chr1 236927046 236927346 -5737007 + AluSx SINE Alu 1 298 -14 2437 61 7 0 chr1 236927760 236928056 -5736297 - AluY SINE Alu -13 298 1 2054 135 3 0 chr1 236928242 236928538 -5735815 - AluSx SINE Alu -15 297 1 816 138 54 0 chr1 236928623 236928753 -5735600 + FRAM SINE Alu 1 137 -39 2061 115 0 14 chr1 236929036 236929364 -5734989 - AluSg SINE Alu 0 324 1 333 242 42 100 chr1 236929658 236929848 -5734505 + L1MC4 LINE L1 7864 8042 0 207 0 0 0 chr1 236929896 236929919 -5734434 + (CA)n Simple_repeat Simple_repeat 1 23 0 1749 181 0 10 chr1 236929999 236930313 -5734040 + AluJb SINE Alu 1 311 -1 735 179 0 0 chr1 236930846 236930969 -5733384 + AluJ SINE Alu 11 133 -179 2363 95 3 0 chr1 236930973 236931318 -5733035 + AluSg SINE Alu 1 346 0 928 202 0 16 chr1 236931318 236931506 -5732847 + AluJ SINE Alu 120 304 -8 2447 92 0 0 chr1 236931765 236932070 -5732283 - AluSx SINE Alu -7 305 1 2369 93 0 0 chr1 236932892 236933192 -5731161 - AluSx SINE Alu -12 300 1 1071 260 104 20 chr1 236933773 236934127 -5730226 + L2 LINE L2 1970 2353 -961 453 310 197 22 chr1 236934143 236934575 -5729778 + L2 LINE L2 2539 3062 -251 1711 178 29 0 chr1 236934682 236934957 -5729396 + AluJb SINE Alu 1 283 -29 1341 173 36 0 chr1 236934737 236934957 -5729396 + AluJb SINE Alu 56 322 0 352 0 0 0 chr1 236934957 236934996 -5729357 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 205 250 132 0 chr1 236935153 236935229 -5729124 + L2 LINE L2 3062 3147 -166 1940 118 40 3 chr1 236935340 236935637 -5728716 + AluSc SINE Alu 1 308 -1 659 298 94 16 chr1 236935752 236936007 -5728346 + L3 LINE CR1 612 886 -691 503 331 222 34 chr1 236936327 236936858 -5727495 + L3 LINE CR1 940 1570 -7 342 325 85 25 chr1 236936942 236937142 -5727211 + MIR SINE MIR 51 262 0 229 232 80 71 chr1 236938918 236939030 -5725323 + MIR SINE MIR 30 142 -120 315 0 0 0 chr1 236939726 236939761 -5724592 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 308 271 0 62 chr1 236940579 236940675 -5723678 + L1MC4 LINE L1 6616 6705 -1337 256 256 47 0 chr1 236940685 236940771 -5723582 + L1MC4 LINE L1 6614 6703 -1339 400 181 76 57 chr1 236940774 236940879 -5723474 + Charlie1 DNA MER1_type 2655 2761 0 261 186 0 34 chr1 236942013 236942072 -5722281 - L1MA9 LINE L1 -38 6274 6218 1271 79 58 16 chr1 236942211 236942400 -5721953 - MER30 DNA MER1_type -33 197 1 942 228 77 27 chr1 236943798 236944096 -5720257 - L1MCa LINE L1 -6094 332 20 21 0 0 0 chr1 236944645 236944666 -5719687 + AT_rich Low_complexity Low_complexity 1 21 0 2259 62 3 13 chr1 236945435 236945741 -5718612 + AluY SINE Alu 1 303 -8 234 291 77 26 chr1 236946857 236946974 -5717379 + L2 LINE L2 3150 3272 0 442 294 20 0 chr1 236947326 236947428 -5716925 + MIR SINE MIR 34 137 -125 276 288 102 25 chr1 236947496 236947614 -5716739 + MIR SINE MIR 124 250 -12 458 210 117 82 chr1 236947842 236948038 -5716315 + MIR SINE MIR 52 262 0 269 284 39 10 chr1 236948844 236948946 -5715407 + MIR SINE MIR 30 134 -74 185 309 0 24 chr1 236949254 236949296 -5715057 + L2 LINE L2 3210 3250 -22 1398 149 149 21 chr1 236949556 236949837 -5714516 + MER7A DNA MER2_type 32 346 0 2111 45 0 8 chr1 236950490 236950757 -5713596 + L1PA3 LINE L1 5888 6152 -3 4305 178 68 57 chr1 236950902 236950953 -5713400 - Looper DNA T2_type 0 1558 1509 6616 98 33 35 chr1 236950953 236952027 -5712326 - MER11C LTR ERVK 0 1071 1 4305 178 68 57 chr1 236952027 236952376 -5711977 - Looper DNA T2_type -49 1509 1165 2284 115 0 0 chr1 236952376 236952681 -5711672 + AluSq SINE Alu 1 305 -8 4305 178 68 57 chr1 236952681 236952955 -5711398 - Looper DNA T2_type -393 1165 895 1726 145 7 27 chr1 236952955 236953252 -5711101 + AluJb SINE Alu 6 296 -16 4305 178 68 57 chr1 236953252 236953743 -5710610 - Looper DNA T2_type -663 895 379 802 228 124 4 chr1 236953744 236953994 -5710359 + MER33 DNA MER1_type 1 280 -44 1523 178 19 7 chr1 236953997 236954267 -5710086 + AluJo SINE Alu 1 273 -39 1362 209 70 0 chr1 236954328 236954672 -5709681 - Looper DNA T2_type -1183 375 8 2130 106 3 32 chr1 236956041 236956353 -5708000 + AluSg SINE Alu 3 305 -5 30 45 0 0 chr1 236956358 236956402 -5707951 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr1 236956936 236956960 -5707393 + AT_rich Low_complexity Low_complexity 1 24 0 2107 85 0 46 chr1 236956969 236957276 -5707077 + AluY SINE Alu 1 293 -18 2131 124 0 6 chr1 236957475 236957789 -5706564 + AluSx SINE Alu 1 312 0 1489 288 62 40 chr1 236958027 236958962 -5705391 - L2 LINE L2 -1 3312 2359 2424 228 138 11 chr1 236959053 236960113 -5704240 - L1MEc LINE L1 -3068 3314 2176 1909 121 7 4 chr1 236960216 236960489 -5703864 + AluSg SINE Alu 21 294 -16 260 258 7 10 chr1 236960491 236960636 -5703717 - L1MEc LINE L1 -4753 1631 1406 264 250 0 0 chr1 236960637 236960717 -5703636 + T-rich Low_complexity Low_complexity 1 80 0 924 205 58 9 chr1 236960858 236961082 -5703271 - L1MEc LINE L1 -5576 987 753 829 199 6 6 chr1 236961127 236961283 -5703070 + MER58B DNA MER1_type 181 336 -5 446 222 0 51 chr1 236961285 236961402 -5702951 - L1MEc LINE L1 -5802 761 651 1235 284 17 14 chr1 236961408 236961764 -5702589 - L1MEc LINE L1 -5996 567 211 1033 244 43 21 chr1 236961767 236962046 -5702307 - L2 LINE L2 -1006 2308 2024 202 219 47 0 chr1 236964050 236964114 -5700239 + (TA)n Simple_repeat Simple_repeat 2 68 0 3012 115 0 11 chr1 236964171 236964631 -5699722 - L1PB3 LINE L1 -7 6147 5693 872 139 21 7 chr1 236964910 236965054 -5699299 + MER2 DNA MER2_type 30 175 -170 28 29 0 0 chr1 236966397 236966432 -5697921 + AT_rich Low_complexity Low_complexity 1 35 0 23 42 0 21 chr1 236966484 236966513 -5697840 + AT_rich Low_complexity Low_complexity 1 30 -17 624 206 8 16 chr1 236966513 236966639 -5697714 - FLAM_A SINE Alu -8 125 1 23 42 0 21 chr1 236966639 236966657 -5697696 + AT_rich Low_complexity Low_complexity 30 47 0 427 326 98 45 chr1 236967322 236967901 -5696452 - MLT1L LTR MaLR -1 614 5 807 258 73 9 chr1 236968680 236968913 -5695440 - MIR SINE MIR 0 262 15 22 80 0 0 chr1 236970299 236970349 -5694004 + AT_rich Low_complexity Low_complexity 1 50 0 352 224 48 102 chr1 236971218 236971365 -5692988 - MIR SINE MIR -21 241 103 23 0 0 0 chr1 236974685 236974708 -5689645 + AT_rich Low_complexity Low_complexity 1 23 0 2495 60 0 0 chr1 236975589 236975889 -5688464 - AluY SINE Alu -11 300 1 365 244 176 23 chr1 236976031 236976207 -5688146 + MARNA DNA Mariner 58 260 -326 376 61 0 0 chr1 236980103 236980152 -5684201 - MADE1 DNA Mariner -29 51 3 419 302 17 26 chr1 236980221 236980337 -5684016 + MER5A DNA MER1_type 9 123 -66 268 140 35 18 chr1 236980428 236980485 -5683868 + Charlie7 DNA MER1_type 44 101 -2511 489 302 111 22 chr1 236980821 236981046 -5683307 + MIR SINE MIR 18 262 0 268 239 102 0 chr1 236981261 236981349 -5683004 - MER94 DNA DNA -36 98 2 313 302 65 7 chr1 236981924 236982063 -5682290 - L2 LINE L2 0 3313 3167 195 288 82 14 chr1 236982418 236982491 -5681862 - L2 LINE L2 -340 2973 2896 462 296 93 37 chr1 236982696 236982790 -5681563 - L2 LINE L2 -1009 2305 2218 2021 169 115 24 chr1 236982790 236983209 -5681144 - MSTB2 LTR MaLR 0 457 1 462 296 93 37 chr1 236983209 236983469 -5680884 - L2 LINE L2 -1096 2218 1931 699 208 25 0 chr1 236985029 236985188 -5679165 - L1MB3 LINE L1 -1 6182 6020 485 204 11 21 chr1 236985346 236985439 -5678914 + L2 LINE L2 3222 3313 0 2125 96 10 7 chr1 236986146 236986447 -5677906 + AluSg SINE Alu 1 302 -8 2336 177 12 37 chr1 236986467 236986827 -5677526 - L1MB5 LINE L1 -6 6168 5823 2065 90 69 3 chr1 236986827 236987117 -5677236 - AluSx SINE Alu -3 309 1 2336 177 12 37 chr1 236987117 236987264 -5677089 - L1MB5 LINE L1 -351 5823 5674 182 290 65 81 chr1 236988370 236988494 -5675859 + L2 LINE L2 3142 3263 -9 2530 53 0 0 chr1 236989067 236989368 -5674985 + AluY SINE Alu 1 301 -10 1597 115 0 0 chr1 236991410 236991618 -5672735 - AluSg/x SINE Alu -13 297 90 2353 78 3 0 chr1 236991732 236992026 -5672327 + AluSp SINE Alu 1 295 -18 2037 141 10 0 chr1 236992440 236992739 -5671614 - AluSx SINE Alu -10 302 1 22 0 0 0 chr1 236992812 236992834 -5671519 + AT_rich Low_complexity Low_complexity 1 22 0 251 314 166 31 chr1 236993174 236993384 -5670969 + MIR SINE MIR 18 252 -10 266 157 11 56 chr1 236993578 236993667 -5670686 + A-rich Low_complexity Low_complexity 2 86 0 2267 87 0 0 chr1 236994291 236994580 -5669773 - AluSx SINE Alu -23 289 1 2255 109 3 0 chr1 236994692 236994986 -5669367 - AluSc SINE Alu -14 295 1 211 213 27 0 chr1 236995468 236995543 -5668810 + CT-rich Low_complexity Low_complexity 2 78 0 32 26 0 0 chr1 236996231 236996270 -5668083 + AT_rich Low_complexity Low_complexity 1 39 0 227 114 0 45 chr1 236996295 236996339 -5668014 - L2 LINE L2 0 3313 3272 980 173 114 33 chr1 236996522 236996794 -5667559 + L1MA7 LINE L1 5997 6290 -1 1141 112 47 34 chr1 236998261 236998494 -5665859 + L1MA8 LINE L1 6052 6287 -4 1642 164 18 30 chr1 236998723 236999059 -5665294 - MER2 DNA MER2_type -13 332 1 21 0 0 0 chr1 237001016 237001037 -5663316 + AT_rich Low_complexity Low_complexity 1 21 0 316 311 87 0 chr1 237002862 237002965 -5661388 - MIR SINE MIR -76 132 21 761 194 25 31 chr1 237003606 237003766 -5660587 + FRAM SINE Alu 1 156 -20 670 178 0 29 chr1 237003995 237004169 -5660184 + CT-rich Low_complexity Low_complexity 4 172 0 336 182 0 0 chr1 237004169 237004235 -5660118 + MSTD LTR MaLR 330 395 -1 726 206 48 121 chr1 237004718 237005048 -5659305 - L1MC4 LINE L1 -938 7069 6718 1848 85 0 0 chr1 237006765 237006989 -5657364 - AluSq SINE Alu -87 226 3 327 25 0 0 chr1 237007313 237007353 -5657000 + (TG)n Simple_repeat Simple_repeat 2 41 0 1643 204 0 0 chr1 237007354 237007638 -5656715 - AluJb SINE Alu -28 284 1 1057 138 0 0 chr1 237008059 237008204 -5656149 - AluJb SINE Alu -38 274 130 550 168 9 56 chr1 237008215 237008322 -5656031 - MER8 DNA MER2_type -134 105 4 600 165 29 0 chr1 237008542 237008645 -5655708 + U6 snRNA snRNA 2 107 0 306 259 14 61 chr1 237008687 237008810 -5655543 - L1MC4 LINE L1 -458 5663 5586 527 154 65 65 chr1 237008810 237008933 -5655420 + FLAM_C SINE Alu 4 126 -7 306 259 14 61 chr1 237008933 237009033 -5655320 - L1MC4 LINE L1 -535 5586 5483 2438 43 7 13 chr1 237009095 237009394 -5654959 - AluSx SINE Alu -15 297 1 1779 164 10 7 chr1 237010139 237010438 -5653915 - AluSx SINE Alu -10 302 3 1673 133 4 12 chr1 237010748 237011003 -5653350 - AluSq SINE Alu -15 298 46 447 162 27 0 chr1 237011003 237011077 -5653276 - AluS SINE Alu -237 76 1 180 0 0 0 chr1 237011286 237011306 -5653047 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2637 143 53 8 chr1 237011416 237011942 -5652411 + L1MA9 LINE L1 5610 6159 -153 867 177 111 87 chr1 237011961 237012429 -5651924 - MER4C LTR ERV1 0 694 184 2211 116 51 23 chr1 237012429 237012783 -5651570 + THE1B LTR MaLR 1 364 0 867 177 111 87 chr1 237012783 237012972 -5651381 - MER4C LTR ERV1 -510 184 1 593 167 24 0 chr1 237012982 237013108 -5651245 + L1MA9 LINE L1 6179 6307 -5 353 299 8 39 chr1 237013145 237013272 -5651081 - L2 LINE L2 -885 2429 2307 2025 141 30 7 chr1 237013880 237014185 -5650168 - AluJo SINE Alu 0 312 1 504 293 57 117 chr1 237014505 237014908 -5649445 + L2 LINE L2 2844 3222 -50 26 64 0 0 chr1 237015052 237015099 -5649254 + AT_rich Low_complexity Low_complexity 1 47 0 186 412 47 0 chr1 237015218 237015303 -5649050 - L2 LINE L2 -25 3247 3159 2333 105 3 6 chr1 237015317 237015630 -5648723 - AluSp SINE Alu -1 312 1 2109 171 0 35 chr1 237015975 237016379 -5647974 - MLT1B LTR MaLR 0 390 1 337 264 60 82 chr1 237016566 237016645 -5647708 + MER5B DNA MER1_type 1 80 -98 3449 110 4 10 chr1 237016645 237017145 -5647208 - LOR1a LTR ERV1 0 497 1 337 264 60 82 chr1 237017145 237017160 -5647193 + MER5B DNA MER1_type 80 94 -84 2398 84 0 0 chr1 237017160 237017457 -5646896 + AluY SINE Alu 1 297 -14 337 264 60 82 chr1 237017457 237017543 -5646810 + MER5B DNA MER1_type 94 178 0 259 303 40 30 chr1 237017766 237017865 -5646488 - L2 LINE L2 -6 3266 3167 315 0 0 0 chr1 237018269 237018304 -5646049 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 237019454 237019475 -5644878 + AT_rich Low_complexity Low_complexity 1 21 0 346 276 94 17 chr1 237020264 237020445 -5643908 + L1MCc LINE L1 18 212 -6211 1724 177 7 27 chr1 237020568 237020867 -5643486 + AluJo SINE Alu 1 293 -19 185 300 0 20 chr1 237020998 237021048 -5643305 - MIR SINE MIR -67 141 93 2442 151 20 11 chr1 237021282 237021726 -5642627 + LOR1a LTR ERV1 1 448 -49 1013 135 0 0 chr1 237021778 237021919 -5642434 - AluJb SINE Alu -171 141 1 433 154 0 0 chr1 237021920 237021985 -5642368 + LOR1b LTR ERV1 397 461 0 39 50 0 0 chr1 237022118 237022178 -5642175 + AT_rich Low_complexity Low_complexity 1 60 0 2001 140 7 0 chr1 237022432 237022717 -5641636 + AluSx SINE Alu 9 295 -17 2782 144 19 20 chr1 237022810 237023297 -5641056 + LTR45B LTR ERV1 2 487 -2 2007 125 7 0 chr1 237023416 237023734 -5640619 + AluSx SINE Alu 1 320 0 620 295 19 38 chr1 237023740 237023950 -5640403 - MIR SINE MIR -48 214 9 2108 151 0 0 chr1 237024241 237024545 -5639808 + AluSx SINE Alu 1 304 -8 305 278 52 33 chr1 237025139 237025351 -5639002 - L1MC5 LINE L1 -166 7795 7580 373 230 18 97 chr1 237025452 237025516 -5638837 + MER103 DNA DNA 8 75 -91 2457 48 3 0 chr1 237025516 237025811 -5638542 - AluY SINE Alu -15 296 1 373 230 18 97 chr1 237025811 237025911 -5638442 + MER103 DNA DNA 75 159 -7 599 265 82 63 chr1 237027428 237027831 -5636522 - L1MC4 LINE L1 0 8042 7625 2168 123 0 3 chr1 237027831 237028132 -5636221 - AluSx SINE Alu -12 300 1 599 265 82 63 chr1 237028132 237028267 -5636086 - L1MC4 LINE L1 -417 7625 7494 2552 166 51 52 chr1 237028379 237028619 -5635734 + L1MB8 LINE L1 5546 5785 -393 2250 116 3 3 chr1 237028619 237028921 -5635432 + AluSx SINE Alu 6 307 -5 2552 166 51 52 chr1 237028921 237029312 -5635041 + L1MB8 LINE L1 5785 6176 -2 348 356 67 13 chr1 237029327 237029566 -5634787 - L1MC4 LINE L1 -584 7458 7207 251 316 74 0 chr1 237029640 237029735 -5634618 - MIR SINE MIR -64 144 43 203 293 0 53 chr1 237029873 237029948 -5634405 - L2 LINE L2 -207 3065 2995 694 245 193 0 chr1 237030052 237030264 -5634089 + MIR SINE MIR 5 257 -5 491 324 24 29 chr1 237030409 237030616 -5633737 + MIR3 SINE MIR 3 208 0 1042 210 58 5 chr1 237030801 237031025 -5633328 + MER8 DNA MER2_type 4 239 0 2453 64 10 0 chr1 237031075 237031372 -5632981 - AluY SINE Alu -11 300 1 237 65 0 0 chr1 237031798 237031829 -5632524 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 1682 185 18 0 chr1 237031830 237032106 -5632247 - AluJo SINE Alu -31 281 1 291 296 0 0 chr1 237032110 237032181 -5632172 + L2 LINE L2 3227 3297 -16 643 286 78 0 chr1 237032210 237032402 -5631951 - MLT1F1 LTR MaLR -334 233 27 261 0 0 0 chr1 237032402 237032431 -5631922 + (TG)n Simple_repeat Simple_repeat 2 30 0 1486 138 0 0 chr1 237032431 237032641 -5631712 - AluSg/x SINE Alu -6 306 97 2079 125 0 24 chr1 237032646 237032941 -5631412 + AluSc SINE Alu 1 288 -21 297 0 0 0 chr1 237032946 237032979 -5631374 + (CA)n Simple_repeat Simple_repeat 2 34 0 558 234 0 0 chr1 237032979 237033086 -5631267 + MLT1F1 LTR MaLR 27 133 -434 692 189 39 0 chr1 237033087 237033214 -5631139 + AluJo SINE Alu 3 134 -178 1631 200 118 10 chr1 237033241 237033641 -5630712 + MLT1F1 LTR MaLR 125 567 0 602 234 180 70 chr1 237034331 237034350 -5630003 - MLT1J1 LTR MaLR -1 445 1 657 233 181 73 chr1 237034350 237034732 -5629621 - MLT1J1 LTR MaLR -23 423 1 224 226 237 32 chr1 237034923 237035016 -5629337 + L2 LINE L2 3136 3247 -25 1740 174 4 0 chr1 237035128 237035398 -5628955 + AluJo SINE Alu 14 284 -28 2456 60 0 38 chr1 237035628 237035942 -5628411 + AluY SINE Alu 1 302 -9 336 392 62 6 chr1 237035997 237036173 -5628180 + MIR3 SINE MIR 20 205 -3 248 246 18 18 chr1 237036192 237036249 -5628104 + L3 LINE CR1 1420 1476 -101 536 251 50 63 chr1 237036250 237036489 -5627864 - MIR SINE MIR -2 260 25 2191 123 0 0 chr1 237036546 237036848 -5627505 - AluSx SINE Alu -10 302 1 2306 82 41 0 chr1 237036897 237037190 -5627163 + AluY SINE Alu 1 305 -6 1445 171 43 26 chr1 237037456 237037642 -5626711 - AluJb SINE Alu -2 310 116 222 62 0 0 chr1 237037642 237037674 -5626679 + (TTAG)n Simple_repeat Simple_repeat 1 32 0 1445 171 43 26 chr1 237037674 237037792 -5626561 - AluJb SINE Alu -196 116 1 480 327 75 26 chr1 237037933 237038159 -5626194 + MIR SINE MIR 12 248 -14 2103 132 0 25 chr1 237038249 237038567 -5625786 + AluSx SINE Alu 1 310 -2 1463 195 0 11 chr1 237039353 237039620 -5624733 + AluJo SINE Alu 30 293 -19 31 26 0 0 chr1 237039620 237039658 -5624695 + AT_rich Low_complexity Low_complexity 1 38 0 2293 100 0 0 chr1 237039864 237040163 -5624190 + AluSq SINE Alu 1 299 -14 2177 103 17 10 chr1 237041450 237041752 -5622601 + AluSq SINE Alu 1 304 -9 3998 101 32 52 chr1 237042759 237043416 -5620937 + LTR9B LTR ERV1 1 644 0 587 235 82 35 chr1 237043517 237043687 -5620666 + MLT1K LTR MaLR 395 572 -16 242 390 39 22 chr1 237043832 237044014 -5620339 - MER5A DNA MER1_type -3 186 2 246 308 25 33 chr1 237044337 237044457 -5619896 - MIR SINE MIR -124 138 20 4832 99 43 37 chr1 237044699 237045051 -5619302 + MER4E LTR ERV1 1 350 -429 2220 114 0 7 chr1 237045051 237045349 -5619004 - AluSg SINE Alu -14 296 1 4832 99 43 37 chr1 237045349 237045771 -5618582 + MER4E LTR ERV1 350 779 0 418 314 7 20 chr1 237046667 237046820 -5617533 - L1ME LINE L1 -438 5683 5533 302 262 93 28 chr1 237046987 237047094 -5617259 - MIR SINE MIR -74 188 75 1778 223 37 42 chr1 237047324 237047781 -5616572 + MLT1E3 LTR MaLR 161 615 -9 987 179 0 6 chr1 237047929 237048097 -5616256 + FRAM SINE Alu 1 164 -12 303 297 0 0 chr1 237049346 237049437 -5614916 + MIR SINE MIR 64 154 -108 557 238 30 30 chr1 237049662 237049830 -5614523 - MER5B DNA MER1_type 0 178 11 351 0 0 0 chr1 237050405 237050444 -5613909 + (TG)n Simple_repeat Simple_repeat 2 40 0 619 200 174 0 chr1 237051019 237051174 -5613179 + L2 LINE L2 3118 3299 -14 344 181 12 0 chr1 237051178 237051261 -5613092 + GA-rich Low_complexity Low_complexity 4 87 0 192 253 40 100 chr1 237051261 237051411 -5612942 + MIR3 SINE MIR 19 159 -49 1380 229 56 36 chr1 237051895 237052340 -5612013 - LTR37B LTR ERV1 0 468 15 2074 136 0 3 chr1 237052341 237052635 -5611718 - AluSq SINE Alu -20 293 1 2396 87 0 3 chr1 237053249 237053549 -5610804 - AluSx SINE Alu -13 299 1 192 257 128 121 chr1 237054281 237054383 -5609970 + MIR SINE MIR 6 106 -156 2309 103 103 23 chr1 237054383 237054714 -5609639 + MSTA LTR MaLR 1 371 -57 2228 109 0 32 chr1 237054714 237055027 -5609326 - AluSg SINE Alu -7 303 1 2309 103 103 23 chr1 237055027 237055091 -5609262 + MSTA LTR MaLR 371 428 0 192 257 128 121 chr1 237055091 237055237 -5609116 + MIR SINE MIR 106 256 -6 275 262 92 35 chr1 237055458 237055599 -5608754 + L2 LINE L2 3123 3271 -1 262 205 64 0 chr1 237056265 237056343 -5608010 - MIR SINE MIR -78 184 102 436 265 61 20 chr1 237057575 237057722 -5606631 - MIR SINE MIR -64 198 46 3611 173 28 66 chr1 237057729 237058043 -5606310 - LTR39 LTR ERV1 -1 782 457 2077 151 0 0 chr1 237058043 237058342 -5606011 + AluSx SINE Alu 1 299 -13 3611 173 28 66 chr1 237058342 237058644 -5605709 - LTR39 LTR ERV1 -326 457 198 929 34 25 0 chr1 237058644 237058762 -5605591 - L1PA4 LINE L1 -1 6154 6034 3611 173 28 66 chr1 237058762 237058897 -5605456 - LTR39 LTR ERV1 -585 198 59 466 274 139 23 chr1 237059397 237059656 -5604697 - L2 LINE L2 -11 3302 3014 2192 94 0 21 chr1 237059918 237060229 -5604124 + AluSg SINE Alu 1 305 0 251 340 10 29 chr1 237060233 237060336 -5604017 + LTR33 LTR ERVL 66 166 -355 445 242 125 0 chr1 237060421 237060549 -5603804 + LTR33 LTR ERVL 378 521 0 609 267 27 59 chr1 237060849 237061070 -5603283 + MIR SINE MIR 36 249 -13 2130 143 0 0 chr1 237062005 237062306 -5602047 - AluSc SINE Alu -8 301 1 449 327 49 29 chr1 237062352 237062658 -5601695 + L2 LINE L2 2564 2875 -439 599 241 56 113 chr1 237062794 237063082 -5601271 - MLT1H LTR MaLR -167 375 109 2321 85 3 28 chr1 237063082 237063401 -5600952 - AluY SINE Alu 0 311 1 599 241 56 113 chr1 237063401 237063447 -5600906 - MLT1H LTR MaLR -433 109 62 183 129 0 0 chr1 237063912 237063943 -5600410 + (CAA)n Simple_repeat Simple_repeat 2 32 0 613 231 142 5 chr1 237066170 237066454 -5597899 + MLT1I LTR MaLR 35 406 -3 261 57 0 0 chr1 237067367 237067402 -5596951 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2275 110 3 7 chr1 237067431 237067741 -5596612 - AluSg SINE Alu -1 309 1 300 247 14 14 chr1 237068069 237068142 -5596211 + L3 LINE CR1 558 630 -947 2164 129 7 3 chr1 237069405 237069707 -5594646 + AluSx SINE Alu 1 303 -9 1354 198 18 42 chr1 237069764 237070047 -5594306 + AluJo SINE Alu 24 299 -13 2175 130 0 0 chr1 237070178 237070479 -5593874 + AluSx SINE Alu 1 301 -11 326 308 163 18 chr1 237070904 237071131 -5593222 - MIR SINE MIR -1 261 2 284 272 55 92 chr1 237071139 237071332 -5593021 + L3 LINE CR1 661 844 -733 2174 96 4 0 chr1 237071332 237071637 -5592716 + AluSg SINE Alu 1 306 0 284 272 55 92 chr1 237071637 237071714 -5592639 + L3 LINE CR1 844 922 -655 312 217 152 0 chr1 237071731 237071823 -5592530 - LTR33 LTR ERVL -2 519 414 2130 151 54 35 chr1 237071824 237071975 -5592378 + MSTB1 LTR MaLR 1 148 -248 2251 99 0 3 chr1 237071975 237072269 -5592084 - AluSq SINE Alu -16 297 5 2130 151 54 35 chr1 237072269 237072519 -5591834 + MSTB1 LTR MaLR 148 368 -28 225 0 0 0 chr1 237072519 237072544 -5591809 + (CA)n Simple_repeat Simple_repeat 2 26 0 2130 151 54 35 chr1 237072544 237072574 -5591779 + MSTB1 LTR MaLR 368 396 0 497 278 47 24 chr1 237072696 237072865 -5591488 - LTR33 LTR ERVL -348 173 1 211 350 30 60 chr1 237072876 237073076 -5591277 + L3 LINE CR1 944 1137 -440 205 312 63 96 chr1 237073134 237073435 -5590918 + L3 LINE CR1 1277 1567 -10 249 339 54 0 chr1 237074774 237074886 -5589467 - MER5B DNA MER1_type -60 118 1 1163 227 123 10 chr1 237075829 237076129 -5588224 + MLT1C LTR MaLR 134 467 0 262 315 22 0 chr1 237076133 237076225 -5588128 - MIR SINE MIR -87 175 82 294 328 168 13 chr1 237076437 237076675 -5587678 + L2 LINE L2 2927 3201 -112 750 187 113 18 chr1 237076684 237076924 -5587429 + AluJb SINE Alu 1 306 -6 327 130 0 0 chr1 237077721 237077775 -5586578 + (TG)n Simple_repeat Simple_repeat 1 54 0 206 128 26 0 chr1 237077935 237077974 -5586379 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 882 218 0 29 chr1 237077996 237078170 -5586183 - FAM SINE Alu -3 172 4 6022 99 27 1 chr1 237078241 237079106 -5585247 + L1PA14 LINE L1 5275 6161 0 2184 116 0 16 chr1 237079243 237079561 -5584792 + AluSq SINE Alu 1 313 0 401 327 81 46 chr1 237080259 237080758 -5583595 + L2 LINE L2 2762 3271 -1 925 335 43 26 chr1 237081882 237082273 -5582080 + MLT1E LTR MaLR 22 419 -174 671 297 95 45 chr1 237082374 237082839 -5581514 + L1ME3A LINE L1 347 834 -5285 248 233 194 0 chr1 237083514 237083617 -5580736 - L2 LINE L2 -871 2443 2321 225 301 88 18 chr1 237083748 237083861 -5580492 + MER65A LTR ERV1 2 122 -323 252 246 55 55 chr1 237084012 237084122 -5580231 + MER65B LTR ERV1 266 375 -156 1158 293 70 13 chr1 237084545 237085204 -5579149 + L2 LINE L2 2616 3309 -4 517 222 37 32 chr1 237085204 237085393 -5578960 + L1ME3A LINE L1 3777 3966 -2163 234 292 120 16 chr1 237085390 237085582 -5578771 + L1ME3A LINE L1 4488 4699 -1430 * 1893 224 37 26 chr1 237085779 237086269 -5578084 + MLT1D LTR MaLR 1 495 -10 556 258 213 4 chr1 237086269 237086537 -5577816 + L1ME3A LINE L1 4906 5229 -900 1059 285 76 27 chr1 237086555 237087307 -5577046 + L1ME3A LINE L1 5246 6010 -94 336 227 221 61 chr1 237087601 237087728 -5576625 + L1ME4a LINE L1 5932 6092 -29 2235 121 29 42 chr1 237087728 237088108 -5576245 - THE1C LTR MaLR 0 375 1 336 227 221 61 chr1 237088108 237088143 -5576210 + L1ME4a LINE L1 6092 6120 -1 509 57 101 0 chr1 237089132 237089290 -5575063 + (TA)n Simple_repeat Simple_repeat 1 174 0 208 83 115 0 chr1 237089305 237089401 -5574952 + (TA)n Simple_repeat Simple_repeat 2 108 0 2439 57 0 0 chr1 237089536 237089835 -5574518 - AluY SINE Alu -12 299 1 42 65 0 0 chr1 237089907 237089984 -5574369 + AT_rich Low_complexity Low_complexity 1 77 0 305 279 47 0 chr1 237091316 237091402 -5572951 + L1MC4 LINE L1 6614 6703 -1339 536 146 0 0 chr1 237091442 237091538 -5572815 + L1MA5 LINE L1 6200 6295 -5 209 139 23 0 chr1 237091678 237091721 -5572632 + (TA)n Simple_repeat Simple_repeat 1 44 0 529 263 0 8 chr1 237091996 237092114 -5572239 + L2 LINE L2 3197 3313 0 472 374 51 30 chr1 237092120 237092668 -5571685 + L2 LINE L2 2710 3270 -2 1750 174 13 0 chr1 237092831 237093130 -5571223 + AluJb SINE Alu 1 303 -9 339 268 63 117 chr1 237093840 237094235 -5570118 + L1M4 LINE L1 2913 3286 -2860 960 122 41 25 chr1 237094290 237094486 -5569867 + L1MA5 LINE L1 6101 6299 -1 2071 206 165 36 chr1 237094487 237095256 -5569097 + L1M4c LINE L1 1446 2313 -4071 21 36 0 0 chr1 237095383 237095411 -5568942 + AT_rich Low_complexity Low_complexity 1 28 0 366 246 109 36 chr1 237095798 237095908 -5568445 - L2 LINE L2 -1 3312 3195 1875 133 0 0 chr1 237096032 237096302 -5568051 - AluSx SINE Alu -42 270 1 283 276 49 89 chr1 237096739 237096849 -5567504 - L2 LINE L2 -1 3312 3212 2137 114 0 0 chr1 237096849 237097148 -5567205 - AluSq SINE Alu -14 299 1 283 276 49 89 chr1 237097148 237097240 -5567113 - L2 LINE L2 -101 3212 3118 1789 106 3 65 chr1 237097630 237097923 -5566430 - AluSx SINE Alu -1 311 37 737 124 0 18 chr1 237097925 237098038 -5566315 - FLAM_C SINE Alu -6 137 27 688 158 0 0 chr1 237098040 237098141 -5566212 + FLAM_C SINE Alu 3 103 -40 949 223 24 0 chr1 237098141 237098248 -5566105 + L1M2c LINE L1 1930 2033 -4756 2078 94 3 41 chr1 237098248 237098566 -5565787 + AluSg SINE Alu 1 306 -4 949 223 24 0 chr1 237098566 237099014 -5565339 + L1M2c LINE L1 2033 2563 -4226 435 144 13 8 chr1 237099021 237099252 -5565101 + AluSq SINE Alu 5 313 0 2141 110 0 0 chr1 237102334 237102642 -5561711 - AluSg SINE Alu -2 308 1 2584 131 64 19 chr1 237106879 237107299 -5557054 - MER1A DNA MER1_type -90 439 1 405 196 0 135 chr1 237107570 237107718 -5556635 - LTR41 LTR ERVL -6 767 640 1403 191 41 10 chr1 237107721 237108014 -5556339 + AluJb SINE Alu 1 302 -10 295 265 12 12 chr1 237108139 237108222 -5556131 + L1ME LINE L1 5483 5565 -556 453 239 9 18 chr1 237108253 237108362 -5555991 - FLAM_C SINE Alu -25 118 11 1606 174 0 7 chr1 237108598 237108896 -5555457 - AluJo SINE Alu -16 296 1 422 211 39 48 chr1 237109002 237109106 -5555247 + MER8 DNA MER2_type 1 103 -136 1013 182 0 5 chr1 237109106 237109293 -5555060 + AluJb SINE Alu 117 302 -10 1298 198 8 4 chr1 237109893 237110161 -5554192 + AluJo SINE Alu 40 308 -4 28 48 0 0 chr1 237110383 237110425 -5553928 + AT_rich Low_complexity Low_complexity 1 42 0 1954 125 3 7 chr1 237110447 237110742 -5553611 - AluSq SINE Alu -15 298 5 1244 221 10 10 chr1 237110900 237111198 -5553155 - AluJo SINE Alu -14 298 1 582 224 0 0 chr1 237111222 237111338 -5553015 - FLAM_C SINE Alu -19 124 9 1255 233 93 76 chr1 237111444 237112085 -5552268 + L2 LINE L2 2458 3100 -213 1647 175 23 13 chr1 237112086 237112260 -5552093 - AluJo SINE Alu 0 312 132 2126 99 0 10 chr1 237112260 237112572 -5551781 - AluSq SINE Alu 0 313 1 1647 175 23 13 chr1 237112572 237112706 -5551647 - AluJo SINE Alu -180 132 1 1583 169 25 80 chr1 237112709 237113071 -5551282 - MLT1D LTR MaLR -2 503 162 601 239 8 0 chr1 237113071 237113205 -5551148 + FLAM_C SINE Alu 2 136 -7 698 217 0 0 chr1 237113210 237113330 -5551023 + FLAM_A SINE Alu 1 120 -13 997 181 3 118 chr1 237113330 237113618 -5550735 + AluJb SINE Alu 45 299 -13 314 232 10 91 chr1 237113618 237113717 -5550636 + MER21B LTR ERV1 16 106 -757 * 2612 240 47 37 chr1 237113715 237114124 -5550229 + MER21B LTR ERV1 19 423 -440 1450 194 3 40 chr1 237114124 237114428 -5549925 - AluJb SINE Alu -18 294 2 2612 240 47 37 chr1 237114428 237114498 -5549855 + MER21B LTR ERV1 423 491 -372 1500 208 0 3 chr1 237114498 237114801 -5549552 + AluJo SINE Alu 1 302 -10 2612 240 47 37 chr1 237114801 237115046 -5549307 + MER21B LTR ERV1 491 751 -112 308 347 41 0 chr1 237115209 237115330 -5549023 + MIR SINE MIR 73 198 -64 186 250 136 15 chr1 237115567 237115699 -5548654 + L2 LINE L2 2914 3061 -211 665 139 28 0 chr1 237115997 237116105 -5548248 - AluJb SINE Alu -8 304 194 707 197 0 0 chr1 237116146 237116263 -5548090 + FLAM_C SINE Alu 9 125 -18 2998 125 9 2 chr1 237116276 237116708 -5547645 - MER1A DNA MER1_type -39 490 56 1773 151 0 3 chr1 237117074 237117359 -5546994 + AluJb SINE Alu 11 294 -18 24 53 0 0 chr1 237117361 237117399 -5546954 + AT_rich Low_complexity Low_complexity 1 38 0 2202 98 3 0 chr1 237117399 237117694 -5546659 + AluSp SINE Alu 1 296 -17 1582 186 0 13 chr1 237117780 237118087 -5546266 + AluJb SINE Alu 1 303 -9 262 306 48 61 chr1 237118448 237118677 -5545676 + L2 LINE L2 2836 3061 -211 224 269 129 11 chr1 237118704 237118797 -5545556 + L2 LINE L2 3183 3286 -27 342 158 28 154 chr1 237118844 237119020 -5545333 + MLT1D LTR MaLR 60 213 -292 1291 235 0 14 chr1 237119021 237119315 -5545038 + AluJo SINE Alu 5 294 -18 1429 156 124 25 chr1 237119568 237119843 -5544510 + AluJo SINE Alu 1 302 0 598 201 0 122 chr1 237119856 237119958 -5544395 - AluJo SINE Alu -145 167 54 1729 146 22 4 chr1 237119958 237120232 -5544121 + AluSx SINE Alu 1 279 -33 312 83 0 0 chr1 237120232 237120280 -5544073 + (CAA)n Simple_repeat Simple_repeat 1 48 0 598 201 0 122 chr1 237120280 237120340 -5544013 - AluJo SINE Alu -256 56 24 491 164 8 102 chr1 237120399 237120430 -5543923 + L1M4 LINE L1 5473 5505 -661 1589 178 10 7 chr1 237120430 237120722 -5543631 + AluJb SINE Alu 1 293 -19 491 164 8 102 chr1 237120722 237120810 -5543543 + L1M4 LINE L1 5505 5589 -577 670 184 0 0 chr1 237120846 237120955 -5543398 - FLAM_A SINE Alu -30 112 4 2719 197 39 35 chr1 237120955 237121575 -5542778 + L1MB8 LINE L1 5552 6173 -5 1481 192 20 20 chr1 237121596 237121898 -5542455 + AluJo SINE Alu 1 302 -10 2007 141 0 3 chr1 237122199 237122505 -5541848 + AluSq SINE Alu 1 305 -8 340 239 11 11 chr1 237122722 237122810 -5541543 - LTR37A LTR ERV1 -99 327 240 1265 239 10 10 chr1 237122955 237123252 -5541101 - AluJo SINE Alu -4 298 2 27 0 0 0 chr1 237123252 237123279 -5541074 + AT_rich Low_complexity Low_complexity 1 27 0 728 203 0 0 chr1 237123279 237123412 -5540941 - FLAM_C SINE Alu 0 133 1 1459 259 80 32 chr1 237123511 237124120 -5540233 + L2 LINE L2 2458 3097 -216 1493 192 10 14 chr1 237124120 237124283 -5540070 - AluJb SINE Alu -13 299 136 2046 100 35 0 chr1 237124283 237124573 -5539780 - AluSg1 SINE Alu -9 300 1 1493 192 10 14 chr1 237124573 237124700 -5539653 - AluJb SINE Alu -176 136 10 1551 191 14 56 chr1 237124721 237125078 -5539275 - MLT1D LTR MaLR -2 503 162 1502 209 0 7 chr1 237125081 237125378 -5538975 + AluJo SINE Alu 5 299 -13 289 231 0 0 chr1 237125378 237125430 -5538923 + MER21B LTR ERV1 16 67 -796 2744 232 79 42 chr1 237125475 237125637 -5538716 + MER21B LTR ERV1 19 174 -689 1941 138 0 3 chr1 237125637 237125933 -5538420 - AluSq SINE Alu -18 295 1 2744 232 79 42 chr1 237125933 237126244 -5538109 + MER21B LTR ERV1 174 472 -391 1690 167 0 10 chr1 237126244 237126549 -5537804 + AluJo SINE Alu 1 302 -10 2744 232 79 42 chr1 237126549 237126833 -5537520 + MER21B LTR ERV1 472 805 -58 7272 103 21 18 chr1 237126850 237127918 -5536435 + MER11C LTR ERVK 1 1071 0 249 302 112 50 chr1 237127973 237128152 -5536201 + MIR SINE MIR 9 198 -64 252 0 0 0 chr1 237128672 237128700 -5535653 + (A)n Simple_repeat Simple_repeat 1 28 0 650 208 0 0 chr1 237128821 237128941 -5535412 - AluJb SINE Alu -8 304 185 1370 226 7 27 chr1 237128943 237129244 -5535109 - AluJo SINE Alu -6 296 2 319 300 17 17 chr1 237129283 237129403 -5534950 + L1MC/D LINE L1 5723 5842 -1966 32 26 0 0 chr1 237129545 237129584 -5534769 + AT_rich Low_complexity Low_complexity 1 39 0 1352 204 29 29 chr1 237129654 237129963 -5534390 + AluJo SINE Alu 3 311 -1 2082 102 7 0 chr1 237130010 237130303 -5534050 + AluSg SINE Alu 1 295 -15 359 281 22 94 chr1 237130365 237130465 -5533888 + L1MC4 LINE L1 5483 5560 -2248 531 171 65 41 chr1 237130465 237130588 -5533765 - FLAM_C SINE Alu -4 129 4 359 281 22 94 chr1 237130588 237130711 -5533642 + L1MC4 LINE L1 5560 5690 -2118 642 165 29 0 chr1 237130753 237130856 -5533497 - U6 snRNA snRNA 0 107 2 562 167 9 65 chr1 237131076 237131184 -5533169 + MER8 DNA MER2_type 4 105 -134 997 138 0 0 chr1 237131195 237131340 -5533013 + AluJb SINE Alu 130 274 -38 1521 204 0 0 chr1 237131761 237132045 -5532308 + AluJb SINE Alu 1 284 -28 363 23 0 0 chr1 237132046 237132090 -5532263 + (CA)n Simple_repeat Simple_repeat 2 45 0 1763 85 0 0 chr1 237132412 237132636 -5531717 + AluSq SINE Alu 3 226 -87 822 206 48 121 chr1 237134353 237134683 -5529670 + L1MC4 LINE L1 6718 7080 -938 226 235 122 20 chr1 237134760 237134858 -5529495 + L1MC5 LINE L1 7799 7906 -55 367 182 0 0 chr1 237135166 237135232 -5529121 - MSTD LTR MaLR -1 395 330 670 178 0 29 chr1 237135232 237135406 -5528947 + GA-rich Low_complexity Low_complexity 4 172 0 1673 173 88 16 chr1 237135441 237135759 -5528594 - MSTD LTR MaLR -55 341 1 1859 148 0 4 chr1 237136894 237137171 -5527182 + AluSq SINE Alu 1 276 -37 180 0 0 0 chr1 237137176 237137196 -5527157 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 476 164 27 0 chr1 237137406 237137479 -5526874 + AluS SINE Alu 2 76 -236 1718 132 0 12 chr1 237137479 237137736 -5526617 + AluSq SINE Alu 46 299 -14 1763 164 10 7 chr1 237138047 237138346 -5526007 + AluSx SINE Alu 3 302 -10 2064 117 4 0 chr1 237139092 237139373 -5524980 + AluSg SINE Alu 1 282 -28 2230 100 10 0 chr1 237140170 237140469 -5523884 - AluSp SINE Alu -9 304 3 2204 102 3 0 chr1 237140530 237140824 -5523529 + AluSg1 SINE Alu 1 295 -14 1314 152 40 46 chr1 237141514 237141816 -5522537 + AluY SINE Alu 1 300 -11 599 165 83 0 chr1 237141944 237142053 -5522300 + MLT1D LTR MaLR 1 118 -387 883 204 90 9 chr1 237142162 237142373 -5521980 + MLT1D LTR MaLR 276 503 -2 2122 134 0 3 chr1 237142404 237142710 -5521643 + AluSx SINE Alu 1 305 -7 1820 161 14 0 chr1 237142887 237143179 -5521174 - AluSx SINE Alu -15 297 2 1998 113 14 3 chr1 237143968 237144270 -5520083 - AluSq SINE Alu 0 305 1 304 98 0 0 chr1 237145129 237145180 -5519173 - AluSp/q SINE Alu -2 301 251 189 239 30 15 chr1 237145450 237145517 -5518836 - MIR SINE MIR -56 152 85 223 281 16 0 chr1 237145866 237145930 -5518423 - MIR SINE MIR -177 85 21 2234 114 0 13 chr1 237147414 237147550 -5516803 + AluSx SINE Alu 1 137 -175 2333 100 3 0 chr1 237147550 237147851 -5516502 + AluSp SINE Alu 1 302 -11 2234 114 0 13 chr1 237147851 237148021 -5516332 + AluSx SINE Alu 137 303 -9 180 111 0 0 chr1 237148021 237148048 -5516305 + (GA)n Simple_repeat Simple_repeat 1 27 0 2342 88 7 3 chr1 237148255 237148563 -5515790 + AluSx SINE Alu 1 309 -3 195 129 0 0 chr1 237148566 237148597 -5515756 + (GAA)n Simple_repeat Simple_repeat 3 33 0 2207 109 10 0 chr1 237148717 237149010 -5515343 - AluSp SINE Alu -17 296 1 2032 121 0 17 chr1 237149032 237149345 -5515008 + AluSq SINE Alu 1 308 0 252 0 0 0 chr1 237150081 237150109 -5514244 + (CTAG)n Simple_repeat Simple_repeat 1 28 0 971 232 0 5 chr1 237150109 237150316 -5514037 - AluJo SINE Alu -31 281 76 2034 95 11 0 chr1 237150318 237150591 -5513762 - AluSx SINE Alu -35 277 2 603 179 7 97 chr1 237150627 237150772 -5513581 + FLAM_C SINE Alu 1 132 -1 979 79 22 29 chr1 237150778 237150917 -5513436 - AluJo SINE Alu -152 160 23 493 188 340 25 chr1 237150959 237151156 -5513197 - AluJo SINE Alu -18 294 36 700 122 47 0 chr1 237151495 237151602 -5512751 + AluSg/x SINE Alu 175 286 -23 336 209 0 0 chr1 237151612 237151679 -5512674 + L1MB8 LINE L1 6106 6172 -6 2313 77 3 3 chr1 237151696 237151993 -5512360 + AluSx SINE Alu 1 297 -15 254 326 11 0 chr1 237152400 237152492 -5511861 - L2 LINE L2 0 3313 3221 442 273 30 23 chr1 237152518 237152650 -5511703 - MLT1I LTR MaLR -50 359 227 523 212 30 8 chr1 237152652 237152784 -5511569 + L1ME2 LINE L1 5764 5898 -266 1502 285 51 32 chr1 237152989 237153436 -5510917 - L2 LINE L2 -157 3156 2719 2037 106 3 14 chr1 237153436 237153748 -5510605 + AluSc SINE Alu 1 309 0 1754 160 3 10 chr1 237153756 237154049 -5510304 + AluJb SINE Alu 1 291 -21 1502 285 51 32 chr1 237154049 237154285 -5510068 - L2 LINE L2 -600 2713 2444 1019 192 23 5 chr1 237154335 237154549 -5509804 + L1M2 LINE L1 5329 5546 -766 213 121 0 0 chr1 237154853 237154886 -5509467 + (TCG)n Simple_repeat Simple_repeat 1 33 0 447 306 148 6 chr1 237156413 237156596 -5507757 - MIR SINE MIR -42 220 12 197 233 0 0 chr1 237156813 237156856 -5507497 + MIR SINE MIR 165 207 -55 331 250 135 20 chr1 237156856 237157004 -5507349 + MER112 DNA MER1_type 1 165 -95 432 257 71 21 chr1 237157102 237157242 -5507111 - L2 LINE L2 -31 3282 3136 21 57 0 0 chr1 237157811 237157846 -5506507 + AT_rich Low_complexity Low_complexity 1 35 0 1760 146 66 0 chr1 237158139 237158413 -5505940 - AluSg SINE Alu -18 292 1 26 0 0 0 chr1 237159019 237159045 -5505308 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr1 237159209 237159249 -5505104 + AT_rich Low_complexity Low_complexity 1 40 0 2037 136 0 0 chr1 237159365 237159651 -5504702 + AluSx SINE Alu 1 286 -26 369 0 0 0 chr1 237159651 237159692 -5504661 + (CA)n Simple_repeat Simple_repeat 2 42 0 233 203 139 0 chr1 237159803 237159882 -5504471 + MIR3 SINE MIR 108 197 -11 2169 112 0 13 chr1 237160360 237160673 -5503680 - AluSc SINE Alu 0 309 1 363 314 49 0 chr1 237161942 237162044 -5502309 - L2 LINE L2 -9 3263 3157 21 57 0 0 chr1 237162961 237162996 -5501357 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 237165107 237165129 -5499224 + AT_rich Low_complexity Low_complexity 1 22 0 11711 118 30 24 chr1 237165644 237166622 -5497731 - Tigger1 DNA MER2_type -5 2413 1443 2487 84 0 0 chr1 237166622 237166931 -5497422 + AluY SINE Alu 1 309 -2 2521 57 0 0 chr1 237166932 237167230 -5497123 + AluY SINE Alu 1 298 -13 11711 118 30 24 chr1 237167230 237168115 -5496238 - Tigger1 DNA MER2_type -974 1444 536 185 332 50 55 chr1 237168165 237168403 -5495950 - L2 LINE L2 -908 2406 2170 572 274 126 43 chr1 237168454 237168684 -5495669 + MIR SINE MIR 4 252 -10 21 0 0 0 chr1 237168908 237168929 -5495424 + AT_rich Low_complexity Low_complexity 1 21 0 2234 87 3 0 chr1 237169004 237169290 -5495063 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr1 237170848 237170869 -5493484 + AT_rich Low_complexity Low_complexity 1 21 0 2202 99 7 10 chr1 237170873 237171165 -5493188 - AluSx SINE Alu -21 291 1 2303 86 9 19 chr1 237171240 237171555 -5492798 - AluSx SINE Alu 0 312 1 770 130 0 9 chr1 237173292 237173407 -5490946 - L1PB1 LINE L1 -172 5979 5866 2180 112 0 0 chr1 237173882 237174167 -5490186 + AluSc SINE Alu 1 285 -24 497 223 32 64 chr1 237175086 237175243 -5489110 + MIR SINE MIR 61 212 -50 561 211 10 10 chr1 237175286 237175390 -5488963 + L2 LINE L2 3199 3302 -11 659 175 10 0 chr1 237175602 237175699 -5488654 + FLAM_A SINE Alu 13 110 -32 227 290 189 24 chr1 237176063 237176232 -5488121 + MIR SINE MIR 46 242 -20 1802 200 126 7 chr1 237176246 237176697 -5487656 - Charlie4a DNA MER1_type -3 505 1 1494 188 40 10 chr1 237177917 237178220 -5486133 + MER58B DNA MER1_type 30 341 0 270 262 36 12 chr1 237179674 237179758 -5484595 - Charlie4 DNA MER1_type -1858 103 18 567 260 130 24 chr1 237179761 237180099 -5484254 + L1M4 LINE L1 4989 5362 -784 1959 53 4 12 chr1 237180099 237180343 -5484010 + AluY SINE Alu 47 288 -23 196 203 85 110 chr1 237180871 237180989 -5483364 - MIR3 SINE MIR -25 183 69 378 291 114 29 chr1 237181044 237181259 -5483094 + MIR SINE MIR 10 241 -21 547 178 163 15 chr1 237181363 237181498 -5482855 - LTR37A LTR ERV1 -52 374 220 1855 124 62 31 chr1 237181543 237181899 -5482454 - THE1C LTR MaLR -8 367 1 1676 179 21 87 chr1 237181925 237182015 -5482338 - L1MB8 LINE L1 0 6178 6084 2367 84 0 0 chr1 237182015 237182311 -5482042 - AluSg SINE Alu -14 296 1 1676 179 21 87 chr1 237182311 237182656 -5481697 - L1MB8 LINE L1 -94 6084 5772 2118 123 3 16 chr1 237183381 237183690 -5480663 - AluSx SINE Alu -7 305 1 201 39 0 0 chr1 237183746 237183772 -5480581 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2370 60 0 0 chr1 237183770 237184054 -5480299 - AluY SINE Alu -29 282 1 492 18 0 0 chr1 237184069 237184126 -5480227 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 1490 232 43 41 chr1 237184905 237185392 -5478961 - L1ME1 LINE L1 -131 6035 5548 2341 85 0 7 chr1 237187009 237187314 -5477039 - AluSc SINE Alu -6 303 1 924 223 36 23 chr1 237187602 237187822 -5476531 + MER58A DNA MER1_type 2 224 0 234 224 60 0 chr1 237187974 237188041 -5476312 + MER58B DNA MER1_type 271 341 0 192 342 101 25 chr1 237188116 237188195 -5476158 + L2 LINE L2 3134 3218 -54 2411 74 0 0 chr1 237189299 237189595 -5474758 + AluY SINE Alu 1 296 -15 1521 194 28 18 chr1 237190012 237190295 -5474058 + AluJo SINE Alu 3 288 -24 227 273 91 20 chr1 237190487 237190586 -5473767 - L2 LINE L2 -16 3297 3192 332 303 62 106 chr1 237191505 237191713 -5472640 - L2 LINE L2 -111 3161 2963 217 267 0 0 chr1 237191997 237192042 -5472311 - L2 LINE L2 0 3272 3228 27 29 0 0 chr1 237193174 237193208 -5471145 + AT_rich Low_complexity Low_complexity 1 34 0 1609 138 74 37 chr1 237193296 237193594 -5470759 - AluJb SINE Alu -3 309 1 1578 151 29 63 chr1 237194689 237195040 -5469313 - MER44D DNA MER2_type 0 609 1 2136 129 0 0 chr1 237195937 237196231 -5468122 + AluSx SINE Alu 1 294 -18 22 80 0 0 chr1 237196816 237196866 -5467487 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr1 237198478 237198500 -5465853 + AT_rich Low_complexity Low_complexity 1 22 0 279 276 95 9 chr1 237202524 237202629 -5461724 - MIR SINE MIR -36 226 113 1485 234 43 41 chr1 237203724 237204212 -5460141 + L1ME1 LINE L1 5548 6036 -130 435 38 0 0 chr1 237204992 237205045 -5459308 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 2367 57 0 0 chr1 237205060 237205342 -5459011 + AluY SINE Alu 1 282 -29 201 39 0 0 chr1 237205342 237205368 -5458985 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2016 139 3 16 chr1 237205424 237205733 -5458620 + AluSx SINE Alu 1 305 -7 1488 183 7 89 chr1 237206467 237206803 -5457550 + L1MB8 LINE L1 5787 6082 -96 2356 84 0 0 chr1 237206803 237207099 -5457254 + AluSg SINE Alu 1 296 -14 1488 183 7 89 chr1 237207099 237207189 -5457164 + L1MB8 LINE L1 6082 6178 0 1697 132 62 31 chr1 237207215 237207571 -5456782 + THE1C LTR MaLR 1 367 -8 485 178 163 15 chr1 237207616 237207751 -5456602 + LTR37A LTR ERV1 220 374 -52 407 285 114 29 chr1 237207851 237208066 -5456287 - MIR SINE MIR -21 241 10 217 220 76 102 chr1 237208121 237208239 -5456114 + MIR3 SINE MIR 69 183 -25 2218 91 3 3 chr1 237208767 237209053 -5455300 - AluSc SINE Alu -23 286 1 451 277 0 0 chr1 237209556 237209704 -5454649 + (TA)n Simple_repeat Simple_repeat 2 149 0 1798 179 16 3 chr1 237209771 237210079 -5454274 - AluJo SINE Alu 0 312 1 1472 212 10 14 chr1 237210225 237210518 -5453835 + AluJb SINE Alu 1 292 -20 522 182 55 39 chr1 237210887 237211068 -5453285 - MER69B DNA AcHobo -16 1210 1027 1719 129 37 71 chr1 237211098 237211302 -5453051 - L1MA8 LINE L1 0 6291 6104 2174 128 0 22 chr1 237211302 237211621 -5452732 - AluSx SINE Alu 0 312 1 1719 129 37 71 chr1 237211621 237211796 -5452557 - L1MA8 LINE L1 -187 6104 5925 1694 166 48 3 chr1 237211974 237212264 -5452089 + AluJo SINE Alu 5 307 -5 951 214 36 5 chr1 237212264 237212484 -5451869 + MER87 LTR ERV1 232 458 -83 2078 112 3 33 chr1 237212507 237212810 -5451543 - AluSq SINE Alu -19 294 1 3239 113 11 60 chr1 237212876 237213493 -5450860 - L1MA8 LINE L1 -363 5928 5342 1300 222 93 16 chr1 237213494 237213881 -5450472 - MER69B DNA AcHobo -248 978 562 2224 120 3 0 chr1 237214017 237214316 -5450037 - AluSx SINE Alu -12 300 1 559 200 59 7 chr1 237215797 237215932 -5448421 + MLT1I LTR MaLR 35 176 -233 312 222 0 0 chr1 237216018 237216081 -5448272 + MLT1I LTR MaLR 344 406 -3 261 57 0 0 chr1 237216994 237217029 -5447324 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2278 107 3 7 chr1 237217058 237217368 -5446985 - AluSg SINE Alu -1 309 1 322 247 14 14 chr1 237217696 237217769 -5446584 + L3 LINE CR1 558 630 -947 2196 130 7 3 chr1 237219032 237219340 -5445013 + AluSx SINE Alu 1 309 -3 471 300 100 26 chr1 237219347 237219737 -5444616 + L1M4 LINE L1 5370 5788 -396 2188 88 10 13 chr1 237220634 237220939 -5443414 - AluSc SINE Alu -5 304 1 24 0 0 0 chr1 237221154 237221178 -5443175 + AT_rich Low_complexity Low_complexity 1 24 0 250 248 23 30 chr1 237221659 237221792 -5442561 + LTR16C LTR ERVL 298 429 -62 207 0 0 0 chr1 237221950 237221973 -5442380 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1950 132 10 3 chr1 237222621 237222916 -5441437 + AluSx SINE Alu 1 297 -15 1299 222 93 16 chr1 237223052 237223439 -5440914 + MER69B DNA AcHobo 562 978 -248 1070 85 17 23 chr1 237223440 237223616 -5440737 + L1M2 LINE L1 5342 5516 -775 2523 53 0 0 chr1 237324180 237324482 -5339871 - AluY SINE Alu -9 302 1 5266 181 37 31 chr1 237324705 237324785 -5339568 - L1MD2 LINE L1 -9 6350 6272 396 0 0 0 chr1 237324785 237324829 -5339524 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2516 87 0 0 chr1 237324834 237325144 -5339209 - AluSx SINE Alu -2 310 1 5266 181 37 31 chr1 237325144 237325270 -5339083 - L1MD2 LINE L1 -90 6269 6145 4902 167 39 9 chr1 237325270 237326110 -5338243 - MER6 DNA MER2_type 0 865 1 5266 181 37 31 chr1 237326110 237327254 -5337099 - L1MD2 LINE L1 -214 6145 4984 2396 76 7 3 chr1 237327451 237327754 -5336599 - AluY SINE Alu -7 304 1 440 116 101 0 chr1 237328338 237328407 -5335946 - MADE1 DNA Mariner 0 80 5 2037 136 7 19 chr1 237329065 237329373 -5334980 + AluSx SINE Alu 1 304 -8 493 257 168 6 chr1 237329801 237329980 -5334373 + MIR SINE MIR 40 247 -15 326 386 38 28 chr1 237330278 237330712 -5333641 - L2 LINE L2 -557 2757 2265 3061 154 21 2 chr1 237331503 237331971 -5332382 - MER61D LTR ERV1 0 501 25 248 172 0 17 chr1 237331942 237332000 -5332353 - LTR28 LTR ERV1 -963 57 1 * 209 360 0 27 chr1 237332107 237332182 -5332171 + MIR SINE MIR 11 83 -179 1576 175 46 0 chr1 237332249 237332529 -5331824 - AluJo SINE Alu -17 295 3 305 333 49 0 chr1 237332570 237332672 -5331681 - MIR SINE MIR -140 122 16 315 300 10 0 chr1 237332753 237332853 -5331500 + MIR SINE MIR 158 258 -4 262 303 236 10 chr1 237334110 237334318 -5330035 - L2 LINE L2 -994 2320 2066 741 294 53 16 chr1 237334355 237334503 -5329850 + L1MEd LINE L1 92 233 -5972 1711 185 6 13 chr1 237334503 237334817 -5329536 + AluJo SINE Alu 1 312 0 741 294 53 16 chr1 237334817 237334988 -5329365 + L1MEd LINE L1 233 423 -5782 1057 161 9 54 chr1 237335053 237335276 -5329077 + L1MC1 LINE L1 6112 6324 -9 247 216 122 0 chr1 237335309 237335383 -5328970 + L1MEd LINE L1 674 756 -5449 1774 167 6 28 chr1 237335680 237335998 -5328355 + AluJb SINE Alu 1 311 -1 319 229 42 51 chr1 237336011 237336129 -5328224 + L1MEd LINE L1 1050 1166 -5039 488 78 0 0 chr1 237336308 237336372 -5327981 - Alu SINE Alu -254 64 1 871 235 14 32 chr1 237336373 237336590 -5327763 + L2 LINE L2 2151 2363 -951 2393 101 0 0 chr1 237336590 237336897 -5327456 + AluSx SINE Alu 1 307 -5 2135 122 3 3 chr1 237336899 237337194 -5327159 + AluSc SINE Alu 1 295 -14 450 275 0 38 chr1 237338144 237338275 -5326078 - MIR SINE MIR -20 242 117 261 0 0 0 chr1 237340585 237340614 -5323739 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr1 237341033 237341055 -5323298 + (A)n Simple_repeat Simple_repeat 1 22 0 391 304 34 27 chr1 237342458 237342606 -5321747 - MER117 DNA MER1_type -48 149 1 415 264 132 0 chr1 237343136 237343295 -5321058 - MIR SINE MIR -2 260 81 668 265 29 29 chr1 237344311 237344515 -5319838 - MIR SINE MIR -46 216 13 641 159 147 32 chr1 237344659 237344816 -5319537 + MLT1B LTR MaLR 1 175 -215 788 256 0 0 chr1 237344819 237344983 -5319370 + FRAM SINE Alu 1 164 -2 864 142 23 6 chr1 237345004 237345180 -5319173 + GA-rich Low_complexity Low_complexity 1 179 0 981 114 105 68 chr1 237345182 237345401 -5318952 + MLT1B LTR MaLR 164 390 0 3065 275 83 17 chr1 237345565 237347584 -5316769 + L1MEd LINE L1 1933 4052 -2163 21 36 0 0 chr1 237347695 237347723 -5316630 + AT_rich Low_complexity Low_complexity 1 28 0 258 246 18 0 chr1 237347733 237347790 -5316563 + MLT1D LTR MaLR 1 58 -447 * 519 223 14 27 chr1 237347789 237347937 -5316416 - LTR16A LTR ERVL -288 162 17 2058 130 0 17 chr1 237348965 237349265 -5315088 + AluSx SINE Alu 1 295 -17 2039 128 10 0 chr1 237349894 237350190 -5314163 + AluSq SINE Alu 1 299 -14 42 98 0 0 chr1 237350563 237350696 -5313657 + AT_rich Low_complexity Low_complexity 1 133 0 4751 158 106 39 chr1 237351404 237351876 -5312477 + LTR28 LTR ERV1 1 440 -580 2149 87 3 28 chr1 237351876 237352165 -5312188 + AluSp SINE Alu 2 283 -30 4751 158 106 39 chr1 237352165 237352648 -5311705 + LTR28 LTR ERV1 440 1020 0 292 203 51 76 chr1 237352874 237352953 -5311400 - L2 LINE L2 -3 3269 3193 233 327 69 19 chr1 237352986 237353145 -5311208 + L2 LINE L2 2927 3093 -179 404 289 118 77 chr1 237353159 237353676 -5310677 + L2 LINE L2 2508 3053 -219 583 279 71 50 chr1 237353899 237354239 -5310114 - L2 LINE L2 -560 2754 2408 1732 180 108 21 chr1 237355079 237355507 -5308846 - MLT1C LTR MaLR 0 467 3 1041 181 57 19 chr1 237356371 237356581 -5307772 - MER20 DNA MER1_type 0 219 2 1808 164 126 33 chr1 237356755 237357026 -5307327 - LOR1b LTR ERV1 0 461 136 2130 120 0 10 chr1 237357026 237357325 -5307028 - AluSx SINE Alu -16 296 1 1808 164 126 33 chr1 237357325 237357475 -5306878 - LOR1b LTR ERV1 -325 136 1 226 333 35 69 chr1 237357554 237357698 -5306655 - L2 LINE L2 -244 3069 2931 4416 178 63 15 chr1 237358049 237359053 -5305300 - L1MA10 LINE L1 -40 6294 5243 259 314 78 33 chr1 237361166 237361319 -5303034 + MIR3 SINE MIR 36 195 -13 13915 191 36 6 chr1 237362354 237368851 -5295502 - L1PB1 LINE L1 -1 6866 8 3127 117 17 0 chr1 237368951 237369423 -5294930 - L1PB1 LINE L1 -5 6146 5667 24 0 0 0 chr1 237369695 237369719 -5294634 + AT_rich Low_complexity Low_complexity 1 24 0 317 314 106 31 chr1 237369750 237370107 -5294246 - L1MC/D LINE L1 -2170 5638 5255 388 314 39 44 chr1 237370215 237370318 -5294035 - L1MC/D LINE L1 -1024 5122 5019 2406 93 0 6 chr1 237370318 237370630 -5293723 - AluSg SINE Alu 0 310 1 388 314 39 44 chr1 237370630 237370730 -5293623 - L1MC/D LINE L1 -1127 5019 4920 228 275 50 0 chr1 237370732 237370812 -5293541 + L1ME LINE L1 5819 5902 -268 422 281 189 0 chr1 237371046 237371199 -5293154 + MER5A DNA MER1_type 2 183 -6 2223 118 0 3 chr1 237372979 237373285 -5291068 + AluSg SINE Alu 1 305 -5 205 273 131 81 chr1 237373704 237373803 -5290550 + MER5A DNA MER1_type 86 189 0 1717 176 31 17 chr1 237374006 237374364 -5289989 + MLT1A1 LTR MaLR 3 365 0 267 73 55 0 chr1 237374460 237374515 -5289838 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1887 179 79 37 chr1 237375142 237375660 -5288693 + LTR55 LTR ERV 1 540 -8 210 348 0 14 chr1 237375688 237375757 -5288596 - L2 LINE L2 -194 3078 3011 363 319 74 0 chr1 237375757 237375892 -5288461 - L2 LINE L2 -226 3046 2902 563 314 32 26 chr1 237376248 237376560 -5287793 + MER102b DNA MER1_type 26 339 -2 891 114 0 38 chr1 237376632 237376764 -5287589 - AluSq/x SINE Alu -186 127 1 204 351 68 0 chr1 237376764 237376838 -5287515 + L2 LINE L2 3215 3293 -20 897 242 62 22 chr1 237377533 237377760 -5286593 + MIR SINE MIR 1 236 -26 34 42 0 0 chr1 237377953 237378001 -5286352 + AT_rich Low_complexity Low_complexity 1 48 0 605 241 89 67 chr1 237378242 237378379 -5285974 - L1MC/D LINE L1 -1902 4244 4111 2290 120 0 0 chr1 237378379 237378688 -5285665 - AluSx SINE Alu -3 309 1 605 241 89 67 chr1 237378688 237379010 -5285343 - L1MC/D LINE L1 -2035 4111 3775 236 122 41 0 chr1 237379785 237379834 -5284519 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 189 0 0 0 chr1 237379962 237379983 -5284370 + (A)n Simple_repeat Simple_repeat 1 21 0 187 306 47 12 chr1 237380064 237380149 -5284204 + L2 LINE L2 2965 3052 -220 820 237 0 24 chr1 237381404 237381573 -5282780 - FAM SINE Alu -10 165 1 595 272 86 48 chr1 237381777 237382191 -5282162 + L1MEd LINE L1 646 1086 -5033 1899 141 18 0 chr1 237382191 237382316 -5282037 + AluSx SINE Alu 1 122 -190 297 0 0 0 chr1 237382316 237382349 -5282004 + (CA)n Simple_repeat Simple_repeat 2 34 0 1899 141 18 0 chr1 237382349 237382506 -5281847 + AluSx SINE Alu 122 288 -24 595 272 86 48 chr1 237382506 237382627 -5281726 + L1MEd LINE L1 1086 1201 -4918 263 344 69 0 chr1 237382677 237382895 -5281458 + HAL1 LINE L1 1415 1647 -860 520 68 68 19 chr1 237383634 237383796 -5280557 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 531 154 39 0 chr1 237383796 237383926 -5280427 + (TA)n Simple_repeat Simple_repeat 2 136 0 456 305 62 29 chr1 237384261 237384533 -5279820 - L1ME3A LINE L1 -293 5877 5597 724 324 21 18 chr1 237384553 237384883 -5279470 - MLT1I LTR MaLR -75 334 4 1796 228 40 7 chr1 237385076 237385528 -5278825 + MLT1C LTR MaLR 1 467 0 512 214 62 24 chr1 237385898 237386078 -5278275 + MLT1I LTR MaLR 244 406 -3 2393 170 21 9 chr1 237386117 237386546 -5277807 + Tigger2a DNA MER2_type 1 434 0 24 0 0 0 chr1 237386552 237386576 -5277777 + AT_rich Low_complexity Low_complexity 1 24 0 454 326 59 0 chr1 237386721 237386856 -5277497 - L2 LINE L2 -3 3269 3127 2191 109 62 14 chr1 237387359 237387717 -5276636 + THE1C LTR MaLR 1 375 0 484 300 78 0 chr1 237388169 237388339 -5276014 + MIR3 SINE MIR 11 195 -13 1169 271 181 45 chr1 237389715 237391066 -5273287 - L2 LINE L2 0 3313 1716 2414 86 0 0 chr1 237391066 237391358 -5272995 - AluSg SINE Alu -18 292 1 1169 271 181 45 chr1 237391358 237391533 -5272820 - L2 LINE L2 -1597 1716 1566 547 328 99 35 chr1 237391533 237391938 -5272415 - L1ME3A LINE L1 -834 5312 4882 366 317 82 68 chr1 237391991 237392798 -5271555 - HAL1 LINE L1 -1575 932 115 224 396 0 0 chr1 237393645 237393756 -5270597 - MIR SINE MIR -115 147 37 28 0 0 0 chr1 237393903 237393931 -5270422 + AT_rich Low_complexity Low_complexity 1 28 0 2286 104 0 3 chr1 237394001 237394299 -5270054 + AluSg SINE Alu 1 297 -13 313 218 13 13 chr1 237394909 237394987 -5269366 + MLT1H LTR MaLR 85 162 -387 2298 102 7 0 chr1 237395575 237395878 -5268475 - AluSp SINE Alu -8 305 1 625 229 14 78 chr1 237396624 237396719 -5267634 + L1MD3 LINE L1 7782 7882 -113 572 168 219 0 chr1 237396719 237396874 -5267479 + MER53 DNA DNA 1 189 0 625 229 14 78 chr1 237396874 237396996 -5267357 + L1MD3 LINE L1 7882 7985 -10 1187 196 58 28 chr1 237397845 237398208 -5266145 - MER69 DNA AcHobo -216 2310 1937 335 286 26 26 chr1 237398222 237398376 -5265977 - MER69 DNA AcHobo -2096 430 277 21 0 0 0 chr1 237398488 237398509 -5265844 + AT_rich Low_complexity Low_complexity 1 21 0 2054 141 0 10 chr1 237398526 237398823 -5265530 - AluSx SINE Alu -18 294 1 312 333 89 35 chr1 237398828 237399086 -5265267 - L1M4 LINE L1 -807 5339 5068 186 167 0 0 chr1 237399101 237399137 -5265216 + (TAA)n Simple_repeat Simple_repeat 2 37 0 324 104 0 90 chr1 237399248 237399315 -5265038 - MIR SINE MIR -62 146 86 353 249 181 23 chr1 237399545 237399810 -5264543 - L1M4 LINE L1 -1576 4570 4264 1924 111 32 14 chr1 237399997 237400308 -5264045 + AluSx SINE Alu 1 316 0 21 0 0 0 chr1 237400594 237400615 -5263738 + AT_rich Low_complexity Low_complexity 1 21 0 2746 142 12 2 chr1 237400928 237401352 -5263001 + MSTA LTR MaLR 1 428 0 257 310 107 25 chr1 237401848 237402090 -5262263 - L1M4 LINE L1 -2004 4142 3881 542 168 88 0 chr1 237402968 237403081 -5261272 + pTR5 LTR ERV1 743 865 -1573 4508 113 28 117 chr1 237403094 237404319 -5260034 + pTR5 LTR ERV1 1034 2606 0 291 291 20 20 chr1 237405618 237405766 -5258587 - L1M4 LINE L1 -2659 3487 3340 463 231 116 116 chr1 237406109 237406464 -5257889 - MLT1J LTR MaLR -1 510 156 22 0 0 0 chr1 237406890 237406912 -5257441 + AT_rich Low_complexity Low_complexity 1 22 0 378 264 105 108 chr1 237407033 237407367 -5256986 - L2 LINE L2 -9 3263 2931 24 77 0 0 chr1 237408149 237408201 -5256152 + AT_rich Low_complexity Low_complexity 1 52 0 9735 188 28 59 chr1 237408201 237410777 -5253576 - L1MA8 LINE L1 -6 7245 4825 1808 66 39 12 chr1 237410777 237411031 -5253322 + L1PA5 LINE L1 5891 6154 0 9735 188 28 59 chr1 237411031 237412076 -5252277 - L1MA8 LINE L1 -2426 4825 3749 1956 234 40 83 chr1 237412097 237412513 -5251840 - L1MA8 LINE L1 -4572 2465 2033 2263 128 0 0 chr1 237412513 237412825 -5251528 - AluSx SINE Alu 0 312 1 1956 234 40 83 chr1 237412825 237414154 -5250199 - L1MA8 LINE L1 -5004 2033 7 393 300 69 34 chr1 237414347 237414731 -5249622 - MLT1L LTR MaLR -41 574 110 290 255 11 11 chr1 237414961 237415055 -5249298 - Charlie1a DNA MER1_type -11 1444 1351 4754 218 66 9 chr1 237415135 237416417 -5247936 - Charlie1a DNA MER1_type -100 1355 1 587 276 33 0 chr1 237416657 237416809 -5247544 - MIR SINE MIR -105 157 1 1165 250 66 54 chr1 237417149 237417598 -5246755 - L1MCa LINE L1 -3593 2833 2391 1686 76 0 0 chr1 237417598 237417808 -5246545 - AluY SINE Alu -101 210 1 1165 250 66 54 chr1 237417808 237418396 -5245957 - L1MCa LINE L1 -4035 2391 1609 1242 155 35 0 chr1 237418396 237418622 -5245731 + L1MA5A LINE L1 6064 6297 0 1165 250 66 54 chr1 237418622 237418902 -5245451 - L1MCa LINE L1 -4817 1609 1334 2494 142 28 19 chr1 237419129 237419551 -5244802 - MSTB LTR MaLR 0 426 1 1156 324 44 26 chr1 237419601 237419892 -5244461 + ERVL LTR ERVL 4524 4808 -956 1857 123 8 0 chr1 237419892 237420145 -5244208 - AluSg SINE Alu -12 298 44 1156 324 44 26 chr1 237420145 237420696 -5243657 + ERVL LTR ERVL 4808 5381 -383 2204 108 0 3 chr1 237420806 237421093 -5243260 - AluSq SINE Alu -27 286 1 226 348 35 17 chr1 237421364 237421479 -5242874 + MLT1I LTR MaLR 104 220 -189 333 0 0 0 chr1 237421665 237421702 -5242651 + (TA)n Simple_repeat Simple_repeat 2 38 0 261 0 0 0 chr1 237421891 237421920 -5242433 + (GA)n Simple_repeat Simple_repeat 2 30 0 371 253 0 13 chr1 237422385 237422464 -5241889 + MIR3 SINE MIR 124 201 -7 187 286 117 107 chr1 237423864 237424060 -5240293 + MIR SINE MIR 32 229 -33 2064 209 11 2 chr1 237424225 237424660 -5239693 - L1PB4 LINE L1 -1 6155 5717 2290 112 0 0 chr1 237425895 237426198 -5238155 + AluSg SINE Alu 1 303 -7 261 279 51 0 chr1 237426262 237426341 -5238012 + L1ME3 LINE L1 6072 6154 -8 235 185 19 0 chr1 237426579 237426633 -5237720 - L1ME3A LINE L1 -208 5962 5908 254 306 121 32 chr1 237426683 237426786 -5237567 + L2 LINE L2 3179 3296 -17 2308 84 10 0 chr1 237426786 237427083 -5237270 - AluSp SINE Alu -13 300 1 254 306 121 32 chr1 237427083 237427103 -5237250 + L2 LINE L2 3296 3313 0 723 193 44 0 chr1 237427231 237427412 -5236941 + MER53 DNA DNA 1 189 0 7535 29 6 0 chr1 237427792 237429150 -5235203 + L1PA3 LINE L1 4784 6150 -5 882 307 139 29 chr1 237429407 237430204 -5234149 - L2 LINE L2 -36 3277 2379 404 267 4 0 chr1 237430207 237430481 -5233872 + (TG)n Simple_repeat Simple_repeat 1 275 0 323 273 25 16 chr1 237430494 237430615 -5233738 - L2 LINE L2 -942 2372 2251 813 187 17 61 chr1 237430620 237430850 -5233503 - MER96B DNA MER1_type? -196 221 2 321 253 315 25 chr1 237430850 237431012 -5233341 - L2 LINE L2 -1076 2238 2030 272 257 79 30 chr1 237431060 237431161 -5233192 - MIR SINE MIR -61 201 96 421 269 8 113 chr1 237431661 237431738 -5232615 - MIR SINE MIR -2 260 177 2291 105 3 0 chr1 237431738 237432034 -5232319 - AluSg SINE Alu -13 297 1 421 269 8 113 chr1 237432034 237432194 -5232159 - MIR SINE MIR -85 177 48 189 234 64 85 chr1 237433051 237433145 -5231208 + L2 LINE L2 292 383 -2931 493 290 13 19 chr1 237433160 237433315 -5231038 + MER5A DNA MER1_type 1 154 -35 1886 318 106 29 chr1 237433323 237434108 -5230245 + L2 LINE L2 845 1749 -1565 2247 105 0 7 chr1 237434108 237434412 -5229941 + AluSx SINE Alu 1 302 -10 1886 318 106 29 chr1 237434412 237434775 -5229578 + L2 LINE L2 1749 2082 -1232 799 314 41 36 chr1 237434775 237435163 -5229190 + L2 LINE L2 2442 2831 -483 * 1796 254 58 64 chr1 237435159 237435297 -5229056 - L2 LINE L2 0 3313 3176 2020 133 7 17 chr1 237435297 237435597 -5228756 - AluSg SINE Alu -13 297 1 1796 254 58 64 chr1 237435597 237436461 -5227892 - L2 LINE L2 -137 3176 2324 727 226 36 10 chr1 237436468 237436663 -5227690 + MLT1E LTR MaLR 391 590 -3 37 39 0 0 chr1 237436741 237436792 -5227561 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr1 237438893 237438918 -5225435 + AT_rich Low_complexity Low_complexity 1 25 0 2067 124 10 10 chr1 237438953 237439259 -5225094 - AluSx SINE Alu -6 306 1 439 198 0 0 chr1 237439263 237439344 -5225009 - FLAM_A SINE Alu -18 124 44 752 304 109 2 chr1 237439582 237440075 -5224278 - L1ME3A LINE L1 -256 5914 5369 314 172 0 16 chr1 237440086 237440150 -5224203 + LTR41 LTR ERVL 7 69 -704 219 133 33 17 chr1 237440416 237440476 -5223877 + (TA)n Simple_repeat Simple_repeat 1 61 0 837 273 81 21 chr1 237440580 237440965 -5223388 - L1ME3 LINE L1 -2 6160 5753 315 212 0 0 chr1 237441090 237441156 -5223197 - L1ME3 LINE L1 -473 5689 5624 668 307 50 49 chr1 237441377 237442052 -5222301 - L1ME3 LINE L1 -1438 4708 4033 459 208 104 0 chr1 237442070 237442195 -5222158 - MER106B DNA MER1_type -26 1033 896 227 212 115 71 chr1 237442486 237442542 -5221811 - L1ME3 LINE L1 -2420 3726 3674 1924 119 0 0 chr1 237442542 237442802 -5221551 - AluSx SINE Alu -15 297 38 227 212 115 71 chr1 237442802 237442858 -5221495 - L1ME3 LINE L1 -2472 3674 3609 1538 182 23 3 chr1 237442861 237443168 -5221185 - L1MD1 LINE L1 -5 6631 6319 1749 189 11 21 chr1 237443170 237443441 -5220912 - L1MD1 LINE L1 -372 6264 5997 2209 121 3 10 chr1 237443441 237443755 -5220598 - AluSx SINE Alu 0 312 1 1749 189 11 21 chr1 237443755 237443864 -5220489 - L1MD1 LINE L1 -639 5997 5888 83 77 0 0 chr1 237443887 237444068 -5220285 + AT_rich Low_complexity Low_complexity 1 181 0 1260 267 38 16 chr1 237444075 237444862 -5219491 - L1MD1 LINE L1 -743 5797 5033 2607 228 111 36 chr1 237444900 237445045 -5219308 - L1MD1 LINE L1 -4928 1612 1479 2284 107 7 0 chr1 237445045 237445343 -5219010 - AluSx SINE Alu -12 300 1 2607 228 111 36 chr1 237445343 237446509 -5217844 - L1MD1 LINE L1 -5061 1479 33 6417 195 29 11 chr1 237446528 237449058 -5215295 + L1MB7 LINE L1 3591 6168 -16 2408 76 7 3 chr1 237449422 237449724 -5214629 - AluSp SINE Alu -10 303 1 422 169 48 0 chr1 237451972 237452055 -5212298 - MER53 DNA DNA 0 189 103 2110 138 0 0 chr1 237452160 237452457 -5211896 - AluSx SINE Alu -15 297 1 217 365 96 0 chr1 237455190 237455294 -5209059 + MIR SINE MIR 33 146 -62 282 95 0 0 chr1 237455756 237455798 -5208555 + (TG)n Simple_repeat Simple_repeat 2 43 0 321 131 0 0 chr1 237455840 237455901 -5208452 + (TG)n Simple_repeat Simple_repeat 2 62 0 200 262 0 0 chr1 237455902 237455944 -5208409 + GA-rich Low_complexity Low_complexity 2 43 0 690 182 6 38 chr1 237456178 237456337 -5208016 + MER3 DNA MER1_type 55 208 -1 2402 109 0 0 chr1 237456566 237456878 -5207475 - AluSx SINE Alu 0 312 1 1794 138 25 34 chr1 237456879 237457206 -5207147 - THE1B LTR MaLR -40 324 1 190 200 0 0 chr1 237457393 237457433 -5206920 + MIR SINE MIR 8 47 -215 2110 110 0 29 chr1 237459096 237459404 -5204949 - AluSx SINE Alu -13 299 1 199 255 0 21 chr1 237459572 237459619 -5204734 - L2 LINE L2 -12 3260 3215 202 220 0 0 chr1 237460115 237460165 -5204188 + (TTA)n Simple_repeat Simple_repeat 1 50 0 322 349 135 0 chr1 237460167 237460293 -5204060 - MIR SINE MIR -109 153 11 468 260 81 114 chr1 237460299 237460471 -5203882 - L2 LINE L2 0 3313 3154 2433 109 0 0 chr1 237460471 237460782 -5203571 + AluSx SINE Alu 1 311 -1 468 260 81 114 chr1 237460782 237460917 -5203436 - L2 LINE L2 -159 3154 3016 312 288 0 0 chr1 237461822 237461895 -5202458 - L2 LINE L2 -9 3263 3191 858 264 135 41 chr1 237462123 237462265 -5202088 - L2 LINE L2 0 3313 3186 1812 167 0 16 chr1 237462265 237462570 -5201783 - AluJo SINE Alu -12 300 1 858 264 135 41 chr1 237462570 237462893 -5201460 - L2 LINE L2 -127 3186 2804 7582 24 0 32 chr1 237463060 237464099 -5200254 - L1PA4 LINE L1 -1 6154 5128 1121 29 0 0 chr1 237464099 237464236 -5200117 - L1P2 LINE L1 -383 5772 5636 298 250 14 0 chr1 237464404 237464476 -5199877 + MIR SINE MIR 30 102 -106 182 273 0 0 chr1 237464475 237464519 -5199834 - MIR SINE MIR -62 146 103 * 460 274 38 24 chr1 237464735 237464918 -5199435 - MER5A DNA MER1_type -2 176 1 224 304 0 6 chr1 237465028 237465196 -5199157 + (TGG)n Simple_repeat Simple_repeat 3 169 0 478 280 159 0 chr1 237465446 237465635 -5198718 - MIR SINE MIR -3 259 41 228 213 64 0 chr1 237465685 237465732 -5198621 + L2 LINE L2 3223 3272 0 229 241 0 35 chr1 237465862 237465920 -5198433 + L2 LINE L2 3204 3259 -13 302 307 73 13 chr1 237467493 237467643 -5196710 - L2 LINE L2 -5 3308 3150 183 237 118 43 chr1 237467630 237467723 -5196630 + L3b LINE CR1 1240 1339 -244 * 351 65 0 0 chr1 237468255 237468301 -5196052 + (TG)n Simple_repeat Simple_repeat 2 47 0 455 274 149 19 chr1 237469070 237469278 -5195075 + MIR SINE MIR 13 247 -15 2110 136 0 0 chr1 237469478 237469773 -5194580 + AluSx SINE Alu 1 295 -17 500 285 51 40 chr1 237470420 237470704 -5193649 + L1ME4a LINE L1 5538 5828 -293 1180 253 57 20 chr1 237470724 237471131 -5193222 - L1ME3A LINE L1 -16 6154 5733 8242 112 38 7 chr1 237471145 237473012 -5191341 - L1PA10 LINE L1 -324 5844 3919 276 256 59 79 chr1 237473037 237473342 -5191011 - L1MDa LINE L1 -4584 1956 1662 314 307 55 37 chr1 237473437 237473600 -5190753 - L1MDa LINE L1 -5855 675 510 358 240 139 105 chr1 237473641 237473908 -5190445 + L1ME4a LINE L1 5814 6089 -32 232 308 15 0 chr1 237474647 237474712 -5189641 + MIR SINE MIR 2 67 -195 281 47 23 0 chr1 237474733 237474776 -5189577 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 3059 210 33 26 chr1 237475447 237475608 -5188745 - L1MA9 LINE L1 -38 6274 6116 2024 119 7 7 chr1 237475608 237475903 -5188450 + AluSg SINE Alu 1 295 -15 3059 210 33 26 chr1 237475903 237476554 -5187799 - L1MA9 LINE L1 -196 6116 5456 890 213 0 23 chr1 237477169 237477343 -5187010 - FRAM SINE Alu -7 169 1 569 138 0 18 chr1 237477345 237477454 -5186899 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 489 312 75 0 chr1 237477855 237478041 -5186312 - MIR SINE MIR -6 256 57 221 306 129 12 chr1 237478607 237478692 -5185661 + L2 LINE L2 325 419 -2895 2073 151 41 32 chr1 237478733 237479277 -5185076 + MLT2A2 LTR ERVL 1 554 0 642 274 149 36 chr1 237479277 237479747 -5184606 + L2 LINE L2 504 1026 -2288 1378 123 0 0 chr1 237479747 237479934 -5184419 - AluSq SINE Alu -126 187 1 1546 306 78 4 chr1 237480181 237480744 -5183609 + L2 LINE L2 1750 2354 -960 276 254 0 0 chr1 237480744 237480799 -5183554 + L2 LINE L2 2273 2327 -987 675 264 0 95 chr1 237480799 237481083 -5183270 + L2 LINE L2 2249 2505 -809 330 259 49 0 chr1 237481491 237481590 -5182763 - MIR SINE MIR -62 146 45 280 186 47 0 chr1 237482377 237482549 -5181804 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 82 0 0 chr1 237482553 237482602 -5181751 + AT_rich Low_complexity Low_complexity 1 49 0 363 98 92 0 chr1 237482609 237482772 -5181581 + (TA)n Simple_repeat Simple_repeat 1 178 0 2331 91 0 0 chr1 237483237 237483524 -5180829 + AluSq SINE Alu 1 287 -26 180 176 0 0 chr1 237483571 237483605 -5180748 + (TA)n Simple_repeat Simple_repeat 2 35 0 2014 55 0 59 chr1 237484924 237485195 -5179158 + AluY SINE Alu 57 311 0 291 28 0 0 chr1 237485564 237485600 -5178753 + (TG)n Simple_repeat Simple_repeat 2 37 0 1627 102 8 8 chr1 237487039 237487284 -5177069 - pTR5 LTR ERV1 -2021 417 173 289 273 10 0 chr1 237487287 237487386 -5176967 - LTR30 LTR ERV1 -79 643 544 4886 131 64 110 chr1 237487386 237488533 -5175820 - pTR5 LTR ERV1 -437 1794 30 207 265 232 33 chr1 237488554 237488705 -5175648 + MIR SINE MIR 32 212 -50 506 128 35 0 chr1 237488748 237488834 -5175519 + L1MB3 LINE L1 6087 6175 -8 1844 242 125 25 chr1 237488918 237488957 -5175396 - Charlie7 DNA MER1_type -5 2607 2573 306 0 0 0 chr1 237488957 237488991 -5175362 + (TA)n Simple_repeat Simple_repeat 2 35 0 1844 242 125 25 chr1 237488991 237489138 -5175215 - Charlie7 DNA MER1_type -39 2573 2442 2194 107 7 0 chr1 237489138 237489427 -5174926 - AluSx SINE Alu -21 291 1 1844 242 125 25 chr1 237489427 237490156 -5174197 - Charlie7 DNA MER1_type -170 2442 1599 365 222 46 19 chr1 237490139 237490247 -5174106 - Charlie7 DNA MER1_type -2455 157 47 * 246 293 98 0 chr1 237490657 237490739 -5173614 + MIR3 SINE MIR 98 187 -21 1848 302 132 58 chr1 237491839 237493404 -5170949 + L2 LINE L2 1007 2698 -616 964 70 13 19 chr1 237493404 237493562 -5170791 + (TA)n Simple_repeat Simple_repeat 2 158 0 1848 302 132 58 chr1 237493562 237493624 -5170729 + L2 LINE L2 2698 2754 -560 317 333 44 63 chr1 237493642 237493801 -5170552 + L2 LINE L2 2904 3059 -254 4676 224 84 48 chr1 237493816 237494037 -5170316 - L1M LINE L1 -743 5403 5191 2242 119 3 0 chr1 237494037 237494348 -5170005 - AluSx SINE Alu 0 312 1 4676 224 84 48 chr1 237494348 237494677 -5169676 - L1M LINE L1 -955 5191 4875 1608 155 0 22 chr1 237494677 237494954 -5169399 - AluJo SINE Alu 0 312 42 4676 224 84 48 chr1 237494954 237495010 -5169343 - L1M LINE L1 -1271 4875 4822 789 157 117 56 chr1 237495010 237495207 -5169146 + MER3 DNA MER1_type 1 209 0 4676 224 84 48 chr1 237495207 237496461 -5167892 - L1M LINE L1 -1324 4822 3495 598 227 80 7 chr1 237496502 237496652 -5167701 + MER20 DNA MER1_type 1 161 -58 342 0 0 0 chr1 237496656 237496694 -5167659 + (CA)n Simple_repeat Simple_repeat 2 39 0 309 115 0 19 chr1 237496715 237496767 -5167586 + LTR39 LTR ERV1 43 93 -690 572 222 0 0 chr1 237496918 237497017 -5167336 - LTR39 LTR ERV1 0 783 685 2315 169 106 102 chr1 237497019 237497117 -5167236 + LTR39 LTR ERV1 130 226 -557 2258 70 47 3 chr1 237497117 237497416 -5166937 + AluSx SINE Alu 1 312 0 2315 169 106 102 chr1 237497416 237497967 -5166386 + LTR39 LTR ERV1 226 782 -1 685 238 91 127 chr1 237498032 237499084 -5165269 - L1M4 LINE L1 -2766 3380 2402 310 304 127 0 chr1 237499267 237499425 -5164928 - L1MCc LINE L1 -6221 202 25 633 271 177 31 chr1 237499455 237499772 -5164581 - L2 LINE L2 0 3313 2951 219 345 35 35 chr1 237499762 237499904 -5164449 - MIR SINE MIR -98 164 23 * 2140 151 3 40 chr1 237500321 237500388 -5163965 + MER7A DNA MER2_type 10 78 -2960 2130 103 7 10 chr1 237500388 237500678 -5163675 - AluSq SINE Alu -24 289 1 2140 151 3 40 chr1 237500678 237500962 -5163391 + MER7A DNA MER2_type 78 346 0 21 57 0 0 chr1 237501571 237501606 -5162747 + AT_rich Low_complexity Low_complexity 1 35 0 235 258 0 15 chr1 237501662 237501728 -5162625 - L1ME4a LINE L1 -96 6025 5961 23 33 0 0 chr1 237502770 237502800 -5161553 + AT_rich Low_complexity Low_complexity 1 30 0 2046 130 16 3 chr1 237503332 237503639 -5160714 + AluSx SINE Alu 1 311 -1 259 164 66 0 chr1 237503755 237503816 -5160537 - L1MC4a LINE L1 -1 7807 7755 * 568 219 55 27 chr1 237503804 237503950 -5160403 - L1MC4 LINE L1 -129 7913 7764 1467 228 97 27 chr1 237503983 237504365 -5159988 - L1MC4 LINE L1 -1151 6891 6478 1839 180 0 3 chr1 237504365 237504665 -5159688 - AluJb SINE Alu -13 299 1 1467 228 97 27 chr1 237504665 237504685 -5159668 - L1MC4 LINE L1 -1564 6478 6461 4666 59 5 0 chr1 237505350 237505907 -5158446 - L1PA7 LINE L1 -2 6152 5593 2195 124 0 0 chr1 237505927 237506226 -5158127 + AluSx SINE Alu 1 299 -13 324 0 0 0 chr1 237507933 237507969 -5156384 + (CA)n Simple_repeat Simple_repeat 2 37 0 733 218 0 36 chr1 237508334 237508499 -5155854 - MER97b DNA MER1_type? -874 179 21 1004 238 227 18 chr1 237509269 237509723 -5154630 - MLT1H LTR MaLR 0 549 1 2226 118 7 0 chr1 237509758 237510063 -5154290 + AluSg SINE Alu 1 307 -3 1707 181 7 10 chr1 237510799 237511102 -5153251 + AluJo SINE Alu 5 306 -6 2242 118 0 22 chr1 237511756 237512071 -5152282 - AluSx SINE Alu -4 308 1 439 200 61 17 chr1 237512329 237512444 -5151909 + MIR SINE MIR 128 247 -15 306 203 17 0 chr1 237512892 237512951 -5151402 - L2 LINE L2 -6 3266 3207 2153 113 10 0 chr1 237513260 237513560 -5150793 + AluSq SINE Alu 1 303 -10 796 272 30 52 chr1 237513933 237514201 -5150152 + MIR SINE MIR 1 262 0 22 35 0 0 chr1 237514549 237514578 -5149775 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr1 237514904 237514939 -5149414 + AT_rich Low_complexity Low_complexity 1 35 0 2506 69 0 19 chr1 237515153 237515470 -5148883 - AluY SINE Alu 0 311 1 1328 220 101 25 chr1 237515523 237515841 -5148512 - MSTD LTR MaLR 0 396 45 1438 118 191 11 chr1 237515841 237516103 -5148250 - AluSg1 SINE Alu 0 309 1 1328 220 101 25 chr1 237516103 237516152 -5148201 - MSTD LTR MaLR -351 45 1 228 367 18 9 chr1 237516189 237516298 -5148055 - MIR SINE MIR -87 175 66 2266 119 3 0 chr1 237516883 237517215 -5147138 - AluSp SINE Alu 0 333 1 671 130 52 17 chr1 237517353 237517468 -5146885 + MER65A LTR ERV1 1 119 -326 661 318 30 17 chr1 237517460 237517696 -5146657 - MLT1I LTR MaLR -167 242 4 * 1888 162 29 14 chr1 237518045 237518391 -5145962 + MER65A LTR ERV1 95 445 0 2116 123 0 29 chr1 237518965 237519275 -5145078 - AluSx SINE Alu -11 301 1 2241 208 64 118 chr1 237519627 237520343 -5144010 - MER21B LTR ERV1 -53 810 146 1722 83 31 0 chr1 237520343 237520571 -5143782 + L1MA1 LINE L1 6068 6302 0 2241 208 64 118 chr1 237520571 237520710 -5143643 - MER21B LTR ERV1 -717 146 1 875 322 69 16 chr1 237521235 237521614 -5142739 - MLT1I LTR MaLR -7 402 4 183 258 65 32 chr1 237522049 237522111 -5142242 + L2 LINE L2 3207 3270 -2 7474 55 84 0 chr1 237522870 237523834 -5140519 - L1PA7 LINE L1 -2 6152 5171 285 194 67 15 chr1 237523836 237523970 -5140383 + Charlie7 DNA MER1_type 2405 2545 -67 226 283 104 19 chr1 237524014 237524120 -5140233 - L1ME3 LINE L1 -79 6083 5969 913 274 53 14 chr1 237524196 237524554 -5139799 - L1ME3 LINE L1 -205 5965 5594 11001 177 122 9 chr1 237524789 237527224 -5137129 + L1PBa LINE L1 6 2713 -4150 634 102 0 34 chr1 237527992 237528080 -5136273 - AluSx SINE Alu -11 301 217 1211 86 0 7 chr1 237528080 237528231 -5136122 - AluSx SINE Alu -162 150 1 396 149 0 174 chr1 237528454 237528575 -5135778 + MER50 LTR ERV1 485 584 -150 837 201 83 6 chr1 237528580 237528749 -5135604 + AluJb SINE Alu 107 288 -24 377 287 155 52 chr1 237529722 237529896 -5134457 + MIR SINE MIR 22 213 -49 2381 95 0 0 chr1 237530409 237530714 -5133639 + AluY SINE Alu 1 305 -6 2086 141 0 22 chr1 237531101 237531420 -5132933 - AluSx SINE Alu 0 312 1 511 261 17 0 chr1 237531693 237531808 -5132545 + L2 LINE L2 3189 3305 -8 3417 181 48 22 chr1 237531808 237532366 -5131987 - MER67C LTR ERV1 0 710 129 333 0 0 0 chr1 237532366 237532403 -5131950 + (CA)n Simple_repeat Simple_repeat 2 38 0 3417 181 48 22 chr1 237532403 237532534 -5131819 - MER67C LTR ERV1 -581 129 3 2240 108 3 3 chr1 237532635 237532932 -5131421 + AluSx SINE Alu 1 297 -15 421 316 155 10 chr1 237533770 237533963 -5130390 - MIR SINE MIR -15 247 27 210 261 65 0 chr1 237534958 237535050 -5129303 + (TATATG)n Simple_repeat Simple_repeat 4 101 0 24 32 0 0 chr1 237536749 237536780 -5127573 + AT_rich Low_complexity Low_complexity 1 31 0 28 48 0 0 chr1 237536857 237536899 -5127454 + AT_rich Low_complexity Low_complexity 1 42 0 346 284 97 46 chr1 237537634 237537944 -5126409 + L1MEc LINE L1 2122 2397 -4029 472 286 114 33 chr1 237538020 237538450 -5125903 + L1MEc LINE L1 2488 2952 -3474 1886 229 67 22 chr1 237538889 237539379 -5124974 + MLT1F LTR MaLR 2 513 -29 2396 88 0 0 chr1 237539471 237539767 -5124586 - AluSg SINE Alu -14 296 1 1617 168 35 0 chr1 237539767 237540052 -5124301 - Tigger1 DNA MER2_type -2123 295 1 1454 171 104 7 chr1 237540052 237540339 -5124014 - L1MC1 LINE L1 -410 5923 5609 346 250 56 94 chr1 237540483 237540804 -5123549 + LTR45B LTR ERV1 305 489 0 2476 67 0 0 chr1 237543520 237543817 -5120536 - AluY SINE Alu -14 297 1 205 298 12 12 chr1 237543900 237543984 -5120369 + MIR SINE MIR 155 238 -24 307 290 37 9 chr1 237544032 237544139 -5120214 - L3 LINE CR1 -210 1367 1258 294 298 30 46 chr1 237544179 237544310 -5120043 + L2 LINE L2 3175 3303 -10 488 157 24 0 chr1 237544627 237544710 -5119643 + MER5B DNA MER1_type 94 178 0 471 308 45 0 chr1 237545102 237545235 -5119118 + L2 LINE L2 3133 3271 -1 229 317 0 37 chr1 237545465 237545547 -5118806 + L2 LINE L2 3235 3313 0 1815 164 34 0 chr1 237545745 237546043 -5118310 + AluSx SINE Alu 3 310 -2 549 232 83 46 chr1 237546045 237546286 -5118067 - L2 LINE L2 -12 3301 3052 246 246 18 53 chr1 237547493 237547607 -5116746 - L1ME4a LINE L1 -44 6077 5968 437 245 36 29 chr1 237547795 237547934 -5116419 + L1ME1 LINE L1 5029 5168 -978 317 255 57 43 chr1 237547924 237548065 -5116288 + L1P LINE L1 5221 5363 -783 * 757 238 32 21 chr1 237548077 237548266 -5116087 + MLT2B1 LTR ERVL 1 191 -329 1063 204 88 4 chr1 237548319 237548413 -5115940 + L1ME1 LINE L1 5369 5454 -710 282 29 0 0 chr1 237548413 237548448 -5115905 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1063 204 88 4 chr1 237548448 237548593 -5115760 + L1ME1 LINE L1 5454 5628 -536 7536 87 13 21 chr1 237548698 237550511 -5113842 + L1PA7 LINE L1 4342 6153 -1 2124 137 0 0 chr1 237550558 237550858 -5113495 + AluSx SINE Alu 9 308 -4 2115 122 40 6 chr1 237550860 237551214 -5113139 + MER51-int LTR ERV1 1094 1459 -6357 1270 108 6 0 chr1 237551314 237551481 -5112872 + AluSp SINE Alu 118 285 -28 350 198 49 0 chr1 237551499 237551580 -5112773 + L1ME1 LINE L1 5857 5941 -225 342 182 221 0 chr1 237551617 237551694 -5112659 + L1ME1 LINE L1 6065 6158 -8 195 308 140 84 chr1 237552180 237552501 -5111852 - L2 LINE L2 -16 3256 2918 950 264 75 45 chr1 237552668 237553093 -5111260 + LTR16A1 LTR ERVL 1 438 -19 357 256 32 8 chr1 237553077 237553202 -5111151 + LTR16A1 LTR ERVL 330 457 0 * 723 325 112 28 chr1 237553390 237554026 -5110327 - L2 LINE L2 -824 2490 1802 1768 193 3 3 chr1 237554678 237554984 -5109369 + AluJb SINE Alu 1 306 -6 237 292 77 23 chr1 237555537 237555667 -5108686 + LTR16A1 LTR ERVL 321 457 0 311 317 77 61 chr1 237555689 237555935 -5108418 - L3 LINE CR1 -7 1570 1321 21 0 0 0 chr1 237557812 237557833 -5106520 + AT_rich Low_complexity Low_complexity 1 21 0 375 60 0 0 chr1 237557915 237557965 -5106388 + (CA)n Simple_repeat Simple_repeat 1 50 0 315 122 0 0 chr1 237558769 237558818 -5105535 + (CAT)n Simple_repeat Simple_repeat 3 51 0 223 296 14 0 chr1 237558969 237559040 -5105313 + (TA)n Simple_repeat Simple_repeat 2 73 0 247 200 20 0 chr1 237559116 237559166 -5105187 + L3 LINE CR1 1173 1223 -354 1543 229 92 28 chr1 237559515 237559875 -5104478 + L1ME1 LINE L1 4782 5195 -983 2605 56 0 0 chr1 237559875 237560181 -5104172 + AluY SINE Alu 1 306 -5 1543 229 92 28 chr1 237560181 237560449 -5103904 + L1ME1 LINE L1 5195 5444 -734 1479 206 32 40 chr1 237560454 237560833 -5103520 + L1ME1 LINE L1 5556 5931 -235 1073 223 51 12 chr1 237560874 237560895 -5103458 + L1ME1 LINE L1 5898 5917 -249 4887 57 17 0 chr1 237560895 237561477 -5102876 - L1PA8 LINE L1 -13 6159 5568 1073 223 51 12 chr1 237561477 237561711 -5102642 + L1ME1 LINE L1 5917 6163 -3 891 71 18 0 chr1 237561790 237561903 -5102450 - L1PA5 LINE L1 -4 6150 6036 24724 46 3 1 chr1 237561905 237565264 -5099089 - L1P2 LINE L1 -450 5704 2340 367 91 15 15 chr1 237565279 237565345 -5099008 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 1337 216 60 26 chr1 237565365 237565717 -5098636 + MLT1A2 LTR MaLR 11 374 0 1653 172 6 50 chr1 237565739 237566059 -5098294 + AluJo SINE Alu 1 306 -6 237 132 0 0 chr1 237566059 237566097 -5098256 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 27 49 0 0 chr1 237566311 237566352 -5098001 + AT_rich Low_complexity Low_complexity 1 41 0 315 366 63 0 chr1 237567063 237567205 -5097148 + MIR3 SINE MIR 16 166 -42 363 157 0 0 chr1 237567385 237567455 -5096898 + A-rich Low_complexity Low_complexity 1 70 0 239 264 75 0 chr1 237568187 237568240 -5096113 - L2 LINE L2 -8 3264 3208 1413 133 34 4 chr1 237568615 237568848 -5095505 + MER50 LTR ERV1 1 240 -494 * 1467 144 26 44 chr1 237568831 237569101 -5095252 + MER50 LTR ERV1 433 697 -37 519 293 57 52 chr1 237569546 237569775 -5094578 + MIR SINE MIR 32 261 -1 259 310 93 8 chr1 237569937 237570066 -5094287 + MIR SINE MIR 66 205 -57 2315 168 8 0 chr1 237570311 237570674 -5093679 + MER47A DNA MER2_type 1 366 0 256 221 29 29 chr1 237571061 237571129 -5093224 + MLT1K LTR MaLR 521 588 0 474 194 86 0 chr1 237571943 237572036 -5092317 + Tigger3(Golem) DNA MER2_type 2 102 -2927 243 89 0 161 chr1 237572034 237572051 -5092302 + Tigger3(Golem) DNA MER2_type 274 292 -939 * 2307 127 24 34 chr1 237572051 237572430 -5091923 + THE1C LTR MaLR 1 375 0 8417 124 41 13 chr1 237572430 237572715 -5091638 - HSMAR2 DNA Mariner -2 1300 1024 2012 145 0 0 chr1 237572715 237573037 -5091316 + AluSx SINE Alu 1 322 0 8417 124 41 13 chr1 237573037 237574014 -5090339 - HSMAR2 DNA Mariner -278 1024 1 243 89 0 161 chr1 237574014 237574051 -5090302 + Tigger3(Golem) DNA MER2_type 290 320 -911 4017 126 95 19 chr1 237574067 237574822 -5089531 + Tigger3(Golem) DNA MER2_type 2217 3029 0 770 204 13 33 chr1 237574867 237575019 -5089334 + MER21B LTR ERV1 69 217 -646 265 272 37 25 chr1 237576650 237576731 -5087622 - L1MC/D LINE L1 -2158 5650 5569 274 288 14 0 chr1 237576970 237577043 -5087310 - MLT1J2 LTR MaLR -294 156 83 221 207 0 17 chr1 237577144 237577202 -5087151 + GA-rich Low_complexity Low_complexity 4 60 0 478 254 81 41 chr1 237577313 237577510 -5086843 + MIR SINE MIR 41 245 -17 2353 89 13 0 chr1 237578594 237578896 -5085457 + AluSg SINE Alu 1 306 -4 337 341 97 34 chr1 237579272 237579448 -5084905 + MIR3 SINE MIR 16 202 -6 901 228 107 11 chr1 237579472 237579744 -5084609 + MER46C DNA MER2_type 41 338 0 462 211 114 0 chr1 237579761 237579875 -5084478 - MIR SINE MIR -129 133 7 221 320 193 44 chr1 237579981 237580297 -5084056 - L2 LINE L2 -1 3312 2950 395 268 131 13 chr1 237580351 237580504 -5083849 - L2 LINE L2 -459 2855 2685 1905 108 196 3 chr1 237580576 237580892 -5083461 - MER51B LTR ERV1 0 377 1 2094 142 8 52 chr1 237580894 237581260 -5083093 - MER51B-int LTR ERV1 -1 7815 7466 589 206 61 0 chr1 237581261 237581392 -5082961 - LTR54B LTR ERV1 -357 141 3 7711 127 34 23 chr1 237581392 237582662 -5081691 - MER51B-int LTR ERV1 -390 7147 5818 4678 63 15 3 chr1 237582662 237583677 -5080676 - MER11A LTR ERVK 0 1266 1 728 93 0 19 chr1 237583677 237583785 -5080568 - MER51B-int LTR ERV1 -1714 5823 5718 1697 79 6 10 chr1 237583900 237584226 -5080127 - MER51B-int LTR ERV1 -2638 2579 2211 * 1938 179 90 42 chr1 237584209 237584685 -5079668 - MER51B-int LTR ERV1 -3245 1972 1474 * 4598 97 80 1 chr1 237584657 237585144 -5079209 - MER51B-int LTR ERV1 -4489 3327 2880 250 24 71 0 chr1 237585144 237585186 -5079167 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4598 97 80 1 chr1 237585186 237585969 -5078384 - MER51B-int LTR ERV1 -4936 2880 1893 23522 118 16 83 chr1 237586069 237590500 -5073853 - L1P LINE L1 -2005 4141 12 4001 134 29 18 chr1 237590502 237591521 -5072832 - MER51B-int LTR ERV1 -6702 1114 1 1636 76 53 257 chr1 237591521 237591995 -5072358 - MER51B LTR ERV1 0 377 1 505 288 44 13 chr1 237592107 237592333 -5072020 + L1ME3A LINE L1 3969 4201 -1945 1287 254 99 62 chr1 237592353 237592949 -5071404 + MER77 LTR ERV1 52 741 -15 1319 285 123 21 chr1 237592971 237594301 -5070052 + L1ME3A LINE L1 4204 5675 -487 857 238 52 10 chr1 237594303 237594496 -5069857 - MER63A DNA MER1_type 0 210 10 2279 120 0 0 chr1 237594532 237594841 -5069512 - AluSq SINE Alu -4 309 1 774 251 17 62 chr1 237594841 237595132 -5069221 + L1ME3A LINE L1 5691 5968 -202 309 297 90 0 chr1 237595225 237595336 -5069017 + L1ME3A LINE L1 5997 6117 -53 255 171 171 24 chr1 237595371 237595453 -5068900 + MIR SINE MIR 148 241 -21 192 311 111 0 chr1 237595620 237595710 -5068643 - L2 LINE L2 -36 3277 3178 229 311 38 19 chr1 237597430 237597536 -5066817 - MIR SINE MIR -3 259 152 1684 212 14 31 chr1 237598922 237599281 -5065072 + MLT1A1 LTR MaLR 1 353 -12 944 193 108 40 chr1 237599697 237600036 -5064317 - MSTD LTR MaLR 0 396 1 265 236 125 0 chr1 237600409 237600481 -5063872 + MIR SINE MIR 16 96 -112 315 240 41 58 chr1 237601099 237601220 -5063133 - MIR SINE MIR -109 153 35 184 370 12 0 chr1 237601750 237601831 -5062522 + MIR SINE MIR 10 91 -171 407 264 40 0 chr1 237601871 237601996 -5062357 + L1MEc LINE L1 1492 1621 -4775 206 305 147 0 chr1 237602025 237602120 -5062233 + MIR SINE MIR 105 213 -49 259 254 181 51 chr1 237602564 237602702 -5061651 + MIR SINE MIR 52 207 -55 2227 160 19 34 chr1 237603143 237603555 -5060798 + Tigger2a DNA MER2_type 28 433 -1 204 162 37 88 chr1 237603556 237603692 -5060661 + (TATAA)n Simple_repeat Simple_repeat 1 129 0 459 303 114 6 chr1 237604410 237604585 -5059768 + MIR SINE MIR 4 197 -65 2130 122 3 0 chr1 237604913 237605207 -5059146 + AluSp SINE Alu 3 297 -16 371 266 133 55 chr1 237605267 237605575 -5058778 - LTR16B LTR ERVL -26 438 107 207 157 0 39 chr1 237608552 237608603 -5055750 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 252 296 14 0 chr1 237608631 237608702 -5055651 - MIR SINE MIR -169 93 22 182 340 0 0 chr1 237608838 237608891 -5055462 - L3 LINE CR1 -28 1549 1497 2043 161 55 33 chr1 237608962 237609497 -5054856 - MLT2A2 LTR ERVL 0 554 2 889 291 81 11 chr1 237609707 237610054 -5054299 + L2 LINE L2 1467 1837 -1477 1763 239 54 20 chr1 237610087 237610586 -5053767 - L1ME2 LINE L1 -67 6097 5582 800 142 7 47 chr1 237610586 237610734 -5053619 + FLAM_C SINE Alu 1 142 -1 858 229 114 18 chr1 237610734 237611014 -5053339 - L1ME2 LINE L1 -576 5586 5280 2153 172 135 48 chr1 237611015 237611082 -5053271 - MLT1E1 LTR MaLR 0 654 594 2024 136 7 3 chr1 237611082 237611376 -5052977 - AluSx SINE Alu -17 295 1 2153 172 135 48 chr1 237611376 237611826 -5052527 - MLT1E1 LTR MaLR -60 594 92 1488 258 64 87 chr1 237612052 237612313 -5052040 + L2 LINE L2 1813 2078 -1236 306 0 0 0 chr1 237612313 237612347 -5052006 + (TG)n Simple_repeat Simple_repeat 2 35 0 1488 258 64 87 chr1 237612347 237612744 -5051609 + L2 LINE L2 2078 2456 -858 2510 80 3 6 chr1 237613165 237613479 -5050874 + AluSp SINE Alu 1 313 0 275 268 0 89 chr1 237613636 237613748 -5050605 + MIR3 SINE MIR 11 112 -96 * 623 242 82 0 chr1 237613734 237613916 -5050437 + L2 LINE L2 2414 2610 -704 204 40 0 0 chr1 237614066 237614091 -5050262 + (TG)n Simple_repeat Simple_repeat 1 25 0 2058 222 53 11 chr1 237614336 237614804 -5049549 - MER21B LTR ERV1 -375 488 1 807 270 62 50 chr1 237615166 237615570 -5048783 - MLT1I LTR MaLR 0 409 1 2304 277 95 50 chr1 237616314 237617437 -5046916 + L1ME3A LINE L1 2346 3417 -2729 1861 140 0 56 chr1 237617437 237617759 -5046594 + AluJo SINE Alu 1 304 -8 2304 277 95 50 chr1 237617759 237618217 -5046136 + L1ME3A LINE L1 3417 3853 -2293 2375 88 3 0 chr1 237618217 237618514 -5045839 + AluSq SINE Alu 1 298 -15 2304 277 95 50 chr1 237618514 237619068 -5045285 + L1ME3A LINE L1 3853 4601 -1545 270 209 145 94 chr1 237619080 237619116 -5045237 - L1MC4a LINE L1 -1440 6368 6335 1989 176 11 36 chr1 237619116 237619196 -5045157 + MER7A DNA MER2_type 1 81 -2957 2162 112 3 3 chr1 237619196 237619499 -5044854 + AluSx SINE Alu 1 303 -9 1989 176 11 36 chr1 237619499 237619775 -5044578 + MER7A DNA MER2_type 81 346 0 270 209 145 94 chr1 237619775 237619973 -5044380 - L1MC4a LINE L1 -1473 6335 6122 626 271 59 0 chr1 237620097 237620318 -5044035 + L1ME3A LINE L1 5718 5951 -219 23 0 0 0 chr1 237620476 237620499 -5043854 + AT_rich Low_complexity Low_complexity 1 23 0 748 206 28 56 chr1 237620519 237620733 -5043620 - L1MA9 LINE L1 -38 6274 6067 1928 141 7 17 chr1 237620903 237621062 -5043291 - AluSx SINE Alu -18 294 138 1897 147 0 17 chr1 237621062 237621389 -5042964 - AluJb SINE Alu 0 312 1 1928 141 7 17 chr1 237621389 237621526 -5042827 - AluSx SINE Alu -174 138 1 242 244 78 33 chr1 237623147 237623237 -5041116 + MIR SINE MIR 104 197 -65 1880 116 6 52 chr1 237623503 237623830 -5040523 - AluSx SINE Alu 0 312 1 247 248 8 8 chr1 237624165 237624282 -5040071 + (TATG)n Simple_repeat Simple_repeat 3 119 0 25 99 0 0 chr1 237624424 237624505 -5039848 + AT_rich Low_complexity Low_complexity 1 81 0 266 0 29 0 chr1 237624590 237624624 -5039729 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 315 0 0 0 chr1 237624623 237624658 -5039695 + (TA)n Simple_repeat Simple_repeat 2 36 0 246 294 15 110 chr1 237624729 237624865 -5039488 + L2 LINE L2 3142 3264 -8 1694 120 131 8 chr1 237625413 237625672 -5038681 - AluSg1 SINE Alu -18 291 1 350 261 187 37 chr1 237625804 237625938 -5038415 - L3 LINE CR1 -98 1479 1326 847 217 0 6 chr1 237626580 237626737 -5037616 - FRAM SINE Alu -22 154 1 484 261 139 12 chr1 237626739 237626904 -5037449 - MIR SINE MIR -75 187 2 214 296 0 0 chr1 237627103 237627157 -5037196 - L2 LINE L2 -16 3256 3203 2402 89 3 13 chr1 237627219 237627535 -5036818 + AluSp SINE Alu 1 313 0 198 0 0 0 chr1 237627543 237627565 -5036788 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 198 0 0 0 chr1 237627813 237627835 -5036518 + (CA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr1 237628001 237628022 -5036331 + AT_rich Low_complexity Low_complexity 1 21 0 778 234 136 0 chr1 237629031 237629215 -5035138 + MER63A DNA MER1_type 2 210 0 2104 111 0 14 chr1 237629259 237629590 -5034763 + AluSq SINE Alu 1 327 0 387 149 0 0 chr1 237630246 237630320 -5034033 + (GA)n Simple_repeat Simple_repeat 1 74 0 1903 134 3 65 chr1 237631270 237631591 -5032762 + AluSx SINE Alu 1 301 -11 242 264 0 11 chr1 237633821 237633912 -5030441 + CT-rich Low_complexity Low_complexity 4 93 0 2280 99 0 3 chr1 237634057 237634351 -5030002 + AluSx SINE Alu 16 308 -4 830 246 145 49 chr1 237635133 237635520 -5028833 + LTR16A LTR ERVL 27 450 0 663 279 119 9 chr1 237635818 237636037 -5028316 + MIR SINE MIR 1 243 -19 622 175 0 0 chr1 237637541 237637644 -5026709 + AluSg/x SINE Alu 204 306 -3 1443 217 0 17 chr1 237637652 237637942 -5026411 - MLT1A1 LTR MaLR -80 285 1 282 109 59 20 chr1 237638257 237638358 -5025995 + (TATAA)n Simple_repeat Simple_repeat 1 105 0 250 135 54 14 chr1 237638358 237638432 -5025921 + (TA)n Simple_repeat Simple_repeat 1 77 0 29 0 0 0 chr1 237639811 237639840 -5024513 + AT_rich Low_complexity Low_complexity 1 29 0 516 213 59 7 chr1 237640366 237640502 -5023851 - L1ME3A LINE L1 -14 6156 6014 1212 217 81 64 chr1 237643496 237643915 -5020438 + MLT1J1 LTR MaLR 15 440 -6 186 286 0 0 chr1 237643921 237643970 -5020383 - L2 LINE L2 -27 3245 3197 1218 121 0 11 chr1 237644301 237644315 -5020038 + AluSg/x SINE Alu 120 133 -179 2089 101 61 3 chr1 237644315 237644611 -5019742 + AluSp SINE Alu 1 313 0 1218 121 0 11 chr1 237644611 237644778 -5019575 + AluSg/x SINE Alu 133 299 -13 278 237 0 40 chr1 237645151 237645227 -5019126 + MIR SINE MIR 60 132 -130 185 317 12 49 chr1 237646522 237646604 -5017749 - MIR SINE MIR -97 111 33 2010 125 0 76 chr1 237646619 237646947 -5017406 + AluSq SINE Alu 1 303 -10 599 48 0 24 chr1 237646954 237647038 -5017315 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 348 328 95 17 chr1 237647223 237647455 -5016898 + MIR SINE MIR 1 250 -12 344 281 68 57 chr1 237648001 237648182 -5016171 + MIR3 SINE MIR 10 190 -65 189 250 21 0 chr1 237648762 237648810 -5015543 - L2 LINE L2 -2 3311 3263 2187 117 0 16 chr1 237649381 237649690 -5014663 + AluSx SINE Alu 1 304 -8 2051 89 46 0 chr1 237650094 237650375 -5013978 + AluSx SINE Alu 17 310 -2 1303 145 110 12 chr1 237650426 237650681 -5013672 - AluJb SINE Alu -32 280 1 31 44 0 0 chr1 237651951 237651996 -5012357 + GC_rich Low_complexity Low_complexity 1 45 0 206 143 0 24 chr1 237652110 237652152 -5012201 + (CCCCCG)n Simple_repeat Simple_repeat 3 43 0 271 282 9 27 chr1 237652280 237652322 -5012031 + (CCCCG)n Simple_repeat Simple_repeat 2 43 -66 201 74 0 0 chr1 237652322 237652349 -5012004 + (CCCCCG)n Simple_repeat Simple_repeat 4 30 0 271 282 9 27 chr1 237652349 237652416 -5011937 + (CCCCG)n Simple_repeat Simple_repeat 43 109 0 239 251 16 53 chr1 237652394 237652581 -5011772 + (CCCG)n Simple_repeat Simple_repeat 1 180 0 * 22 0 0 0 chr1 237652854 237652876 -5011477 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 237655168 237655191 -5009162 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 237655221 237655242 -5009111 + AT_rich Low_complexity Low_complexity 1 21 0 362 297 93 63 chr1 237656481 237656814 -5007539 - MLT1I LTR MaLR -29 380 38 235 271 0 0 chr1 237656846 237656894 -5007459 + MIR SINE MIR 199 246 -16 251 259 17 0 chr1 237658976 237659034 -5005319 - L2 LINE L2 0 3272 3214 1118 298 75 24 chr1 237659247 237659925 -5004428 + L1ME3 LINE L1 3722 4434 -1712 1809 269 62 51 chr1 237659944 237660568 -5003785 + L1ME3 LINE L1 4557 5173 -989 186 43 0 0 chr1 237660568 237660591 -5003762 + (TA)n Simple_repeat Simple_repeat 2 24 0 1809 269 62 51 chr1 237660591 237661329 -5003024 + L1ME3 LINE L1 5173 5902 -260 1969 124 0 0 chr1 237661329 237661595 -5002758 + AluSx SINE Alu 1 266 -46 1809 269 62 51 chr1 237661595 237661621 -5002732 + L1ME3 LINE L1 5902 5926 -236 249 33 0 0 chr1 237661621 237661651 -5002702 + (CA)n Simple_repeat Simple_repeat 1 30 0 1809 269 62 51 chr1 237661651 237661828 -5002525 + L1ME3 LINE L1 5926 6145 -17 943 50 29 36 chr1 237662237 237662376 -5001977 - L1PA14 LINE L1 -2 6159 6022 246 300 12 12 chr1 237662978 237663058 -5001295 - L2 LINE L2 -2 3311 3232 241 272 136 105 chr1 237663272 237663500 -5000853 + L2 LINE L2 3001 3235 -37 1922 155 0 29 chr1 237663662 237663978 -5000375 + AluJo SINE Alu 1 307 -5 2305 73 13 30 chr1 237664404 237664706 -4999647 - AluY SINE Alu -14 297 1 2825 235 108 16 chr1 237664896 237665814 -4998539 - L1MC3 LINE L1 -4 7781 6780 2447 61 0 0 chr1 237665979 237666273 -4998080 - AluY SINE Alu -17 294 1 183 156 0 0 chr1 237666422 237666454 -4997899 + (TG)n Simple_repeat Simple_repeat 2 33 0 1249 135 5 16 chr1 237667508 237667700 -4996653 - AluSx SINE Alu -122 190 1 2035 153 0 0 chr1 237667702 237667996 -4996357 - AluSx SINE Alu -18 294 1 2397 79 0 26 chr1 237668408 237668712 -4995641 - AluSq SINE Alu -17 296 1 688 98 0 0 chr1 237671285 237671377 -4992976 - L1M2 LINE L1 -523 5777 5686 189 207 58 58 chr1 237671428 237671515 -4992838 - L3b LINE CR1 -186 1397 1311 1692 187 0 3 chr1 237671630 237671919 -4992434 - AluJb SINE Alu -24 288 1 25 51 0 0 chr1 237671993 237672032 -4992321 + AT_rich Low_complexity Low_complexity 1 39 0 406 284 153 5 chr1 237672774 237673003 -4991350 - MLT1L LTR MaLR 0 615 261 338 251 118 53 chr1 237672978 237673165 -4991188 - MLT1L LTR MaLR -249 366 168 * 2370 165 63 0 chr1 237673271 237673670 -4990683 - MSTB LTR MaLR -2 424 1 2328 94 3 0 chr1 237673718 237674015 -4990338 - AluSx SINE Alu -14 298 1 351 113 0 0 chr1 237674085 237674138 -4990215 + (CA)n Simple_repeat Simple_repeat 2 54 0 611 279 68 40 chr1 237674442 237674764 -4989589 - L2 LINE L2 -815 2499 2169 22 35 0 0 chr1 237674935 237674964 -4989389 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 237674983 237675003 -4989350 + (TA)n Simple_repeat Simple_repeat 1 20 0 501 267 37 0 chr1 237675507 237675668 -4988685 - MER113 DNA MER1_type? -29 492 326 427 228 7 59 chr1 237675731 237675867 -4988486 - MER113 DNA MER1_type? -344 177 49 2152 236 103 8 chr1 237676573 237677108 -4987245 + MLT1G LTR MaLR 5 590 0 367 317 93 99 chr1 237677606 237677928 -4986425 + L1ME4a LINE L1 5395 5714 -407 270 265 133 0 chr1 237678042 237678140 -4986213 - L2 LINE L2 -175 3138 3028 258 222 133 0 chr1 237678140 237678230 -4986123 + L1ME4a LINE L1 5698 5799 -2009 433 237 34 8 chr1 237678388 237678506 -4985847 + L1ME4a LINE L1 5977 6097 -24 2390 97 0 7 chr1 237678531 237678841 -4985512 + AluSg SINE Alu 1 308 -2 327 282 27 36 chr1 237678921 237679031 -4985322 + L2 LINE L2 3200 3308 -5 398 307 145 6 chr1 237679066 237679245 -4985108 - MIR SINE MIR -13 249 46 207 250 40 66 chr1 237679537 237679613 -4984740 + MIR SINE MIR 20 93 -115 1059 262 139 9 chr1 237679626 237680065 -4984288 - MLT1J LTR MaLR -15 496 1 264 59 0 0 chr1 237681902 237681936 -4982417 + (A)n Simple_repeat Simple_repeat 1 34 0 573 88 0 0 chr1 237682656 237682736 -4981617 + (GGGGA)n Simple_repeat Simple_repeat 4 83 0 1807 211 16 16 chr1 237683787 237684152 -4980201 + MLT1A1 LTR MaLR 1 365 0 942 209 0 6 chr1 237684253 237684416 -4979937 - FRAM SINE Alu -1 165 4 1277 82 5 54 chr1 237684517 237684701 -4979652 - AluSq SINE Alu -138 175 1 213 303 30 0 chr1 237685508 237685607 -4978746 + (TATATG)n Simple_repeat Simple_repeat 5 106 0 208 333 0 0 chr1 237686032 237686095 -4978258 + MER5A DNA MER1_type 40 102 -87 243 233 117 50 chr1 237687291 237687411 -4976942 - L1ME4a LINE L1 -3 6118 5991 213 258 0 0 chr1 237687452 237687518 -4976835 + CT-rich Low_complexity Low_complexity 4 69 0 1223 219 56 50 chr1 237687566 237687904 -4976449 - L1ME2 LINE L1 -9 6224 5885 5245 147 27 31 chr1 237688008 237688920 -4975433 - L1MC2 LINE L1 -1 6343 5435 276 203 47 0 chr1 237688944 237689008 -4975345 + L1M4 LINE L1 4255 4321 -1825 288 194 54 11 chr1 237689009 237689102 -4975251 + (CATA)n Simple_repeat Simple_repeat 4 100 0 1866 211 22 1 chr1 237689116 237689587 -4974766 - L1MC2 LINE L1 -745 5401 4943 44294 45 2 1 chr1 237689709 237695858 -4968495 - L1PA4 LINE L1 -2 6153 1 3829 231 32 42 chr1 237695861 237696852 -4967501 - L1ME2 LINE L1 -478 5755 4788 2167 126 0 28 chr1 237696852 237697170 -4967183 - AluSc SINE Alu 0 309 1 3829 231 32 42 chr1 237697170 237697742 -4966611 - L1ME2 LINE L1 -1445 4788 4212 285 289 41 16 chr1 237697742 237697863 -4966490 - L1ME2 LINE L1 -6234 162 39 395 291 126 27 chr1 237697908 237698131 -4966222 - L1ME4a LINE L1 -225 5896 5652 238 285 98 32 chr1 237698418 237698541 -4965812 - MIR3 SINE MIR -73 135 5 2148 127 0 3 chr1 237699664 237699964 -4964389 - AluSx SINE Alu -13 299 1 184 271 0 21 chr1 237700375 237700423 -4963930 - MIR3 SINE MIR -10 198 152 1767 110 0 4 chr1 237700548 237700784 -4963569 - AluSq SINE Alu -1 312 78 2385 67 3 13 chr1 237701413 237701711 -4962642 + AluY SINE Alu 1 295 -16 3839 145 5 0 chr1 237702349 237702921 -4961432 + L1PA16 LINE L1 5583 6157 -9 2214 89 10 7 chr1 237703421 237703712 -4960641 + AluSx SINE Alu 1 292 -20 307 240 42 42 chr1 237703712 237703801 -4960552 + L1MC4 LINE L1 6612 6703 -1339 364 289 0 0 chr1 237703805 237703895 -4960458 + L1MC4 LINE L1 6614 6703 -1339 334 256 0 22 chr1 237703899 237703989 -4960364 + L1MC4 LINE L1 6614 6701 -1341 364 289 0 0 chr1 237704015 237704105 -4960248 + L1MC4 LINE L1 6614 6703 -1339 392 230 0 8 chr1 237704108 237704188 -4960165 + (TA)n Simple_repeat Simple_repeat 1 81 -44 2233 83 10 7 chr1 237704188 237704478 -4959875 + AluSx SINE Alu 1 291 -21 392 230 0 8 chr1 237704478 237704523 -4959830 + (TA)n Simple_repeat Simple_repeat 81 125 0 350 250 0 22 chr1 237704527 237704619 -4959734 + L1MC4 LINE L1 6614 6703 -1339 350 250 0 22 chr1 237704623 237704715 -4959638 + L1MC4 LINE L1 6614 6703 -1339 340 289 0 0 chr1 237704731 237704821 -4959532 + L1MC4 LINE L1 6614 6703 -1339 483 261 0 0 chr1 237704822 237704983 -4959370 + (TA)n Simple_repeat Simple_repeat 1 161 0 343 281 22 0 chr1 237704986 237705075 -4959278 + L1MC4 LINE L1 6613 6703 -1339 313 299 23 0 chr1 237705076 237705163 -4959190 + L1MC4 LINE L1 6613 6701 -1341 404 346 128 12 chr1 237705314 237705635 -4958718 - L2 LINE L2 -671 2643 2286 514 58 14 0 chr1 237705654 237705723 -4958630 - MADE1 DNA Mariner 0 80 11 292 322 126 35 chr1 237709260 237709459 -4954894 - MIR SINE MIR -17 245 29 2455 58 3 7 chr1 237709468 237709806 -4954547 - AluY SINE Alu 0 338 2 1181 182 0 0 chr1 237710144 237710336 -4954017 + AluJo SINE Alu 89 280 -32 459 317 119 33 chr1 237710364 237710783 -4953570 + L1MC/D LINE L1 5296 5750 -2058 424 300 0 10 chr1 237710817 237710917 -4953436 + MIR SINE MIR 2 100 -162 393 75 0 0 chr1 237711104 237711157 -4953196 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr1 237712575 237712597 -4951756 + AT_rich Low_complexity Low_complexity 1 22 0 2728 121 79 30 chr1 237712597 237712923 -4951430 - L1MA7 LINE L1 0 6291 5930 2118 128 0 0 chr1 237712923 237713219 -4951134 - AluSx SINE Alu -16 296 1 2728 121 79 30 chr1 237713219 237713397 -4950956 - L1MA7 LINE L1 -361 5930 5762 1424 259 50 81 chr1 237713510 237713900 -4950453 - L2 LINE L2 -8 3305 2905 2188 92 0 11 chr1 237713900 237714183 -4950170 - AluSg1 SINE Alu -29 280 1 1424 259 50 81 chr1 237714183 237714658 -4949695 - L2 LINE L2 -408 2905 2455 3009 207 56 23 chr1 237714667 237715362 -4948991 - L1MB5 LINE L1 -7 6167 5450 3816 288 160 15 chr1 237715365 237717197 -4947156 - L2 LINE L2 -860 2454 357 2884 117 95 4 chr1 237717211 237717665 -4946688 - L1PA16 LINE L1 0 6166 5672 2637 141 40 2 chr1 237717670 237718256 -4946097 + L1PA16 LINE L1 5065 5672 -494 183 241 74 0 chr1 237718459 237718513 -4945840 + L2 LINE L2 3215 3272 0 256 161 247 25 chr1 237718604 237718685 -4945668 - L2 LINE L2 -4 3309 3211 2038 118 7 3 chr1 237718685 237718972 -4945381 - AluSx SINE Alu -24 288 1 242 125 21 0 chr1 237719172 237719220 -4945133 + (TG)n Simple_repeat Simple_repeat 2 50 0 7891 34 29 0 chr1 237719387 237720258 -4944095 - MER11D LTR ERVK 0 897 2 8544 26 0 0 chr1 237720259 237721229 -4943124 - HERVK11D LTR ERVK 0 7752 6783 * 13310 41 8 0 chr1 237721219 237722773 -4941580 - HERVK11D LTR ERVK -1161 6591 5025 588 284 33 6 chr1 237722955 237723138 -4941215 - Charlie8 DNA MER1_type -2148 269 82 1036 196 0 16 chr1 237723364 237723558 -4940795 + MER3 DNA MER1_type 1 191 -18 839 199 106 21 chr1 237723679 237723909 -4940444 - MER115 DNA AcHobo 0 4031 445 2138 111 3 10 chr1 237725484 237725782 -4938571 - AluSx SINE Alu -16 296 1 2050 184 11 6 chr1 237726434 237726793 -4937560 - MLT1A1 LTR MaLR 0 365 5 1706 180 0 0 chr1 237727018 237727296 -4937057 - AluJb SINE Alu -34 278 1 335 348 59 36 chr1 237727870 237728070 -4936283 - L2 LINE L2 -371 2943 2736 2017 134 7 3 chr1 237728070 237728376 -4935977 + AluSx SINE Alu 1 307 -5 335 348 59 36 chr1 237728376 237728396 -4935957 - L2 LINE L2 -578 2736 2718 204 323 0 0 chr1 237728551 237728616 -4935737 - L2 LINE L2 -214 3058 2994 204 250 12 48 chr1 237729468 237729552 -4934801 - L2 LINE L2 -61 3252 3172 234 0 0 0 chr1 237731776 237731802 -4932551 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 280 286 75 23 chr1 237732814 237732947 -4931406 - MIR SINE MIR -109 153 14 805 152 0 69 chr1 237733238 237733383 -4930970 - AluSc SINE Alu -15 294 160 1754 133 34 0 chr1 237733491 237733754 -4930599 - AluSx SINE Alu -40 272 1 320 297 103 7 chr1 237734008 237734153 -4930200 - MIR3 SINE MIR -9 199 41 764 261 56 21 chr1 237734887 237735174 -4929179 + L3b LINE CR1 1147 1443 -140 3305 200 20 20 chr1 237735382 237736028 -4928325 + MER82 DNA MER2_type 7 652 -1 1148 116 17 12 chr1 237736121 237736294 -4928059 + L1PA10 LINE L1 5990 6163 -5 2061 103 0 0 chr1 237736294 237736565 -4927788 + AluY SINE Alu 39 309 -2 2036 291 104 14 chr1 237736609 237737635 -4926718 + L2 LINE L2 2198 3313 0 935 211 32 5 chr1 237739926 237740111 -4924242 + L1MB3 LINE L1 5987 6176 -7 1857 192 18 47 chr1 237740620 237741005 -4923348 + MLT1A2 LTR MaLR 1 374 0 839 134 0 49 chr1 237741627 237741769 -4922584 + FLAM_C SINE Alu 3 137 -6 1315 256 70 33 chr1 237743983 237744413 -4919940 - MLT1J1 LTR MaLR 0 446 1 6713 144 54 32 chr1 237744521 237745228 -4919125 + Tigger3b DNA MER2_type 1 746 -2282 2365 93 0 3 chr1 237745228 237745530 -4918823 + AluY SINE Alu 1 301 -10 6713 144 54 32 chr1 237745530 237746027 -4918326 + Tigger3b DNA MER2_type 746 1231 0 2158 120 0 0 chr1 237746029 237746320 -4918033 - AluSx SINE Alu -21 291 1 351 275 64 9 chr1 237747314 237747423 -4916930 - L2 LINE L2 -5 3308 3194 549 165 0 31 chr1 237747510 237747607 -4916746 - FLAM_A SINE Alu -4 138 45 317 277 12 0 chr1 237747624 237747707 -4916646 - MIR SINE MIR -114 148 65 1941 168 0 7 chr1 237748021 237748331 -4916022 + AluJo SINE Alu 1 308 -4 283 266 54 98 chr1 237749620 237749804 -4914549 + MLT1I LTR MaLR 90 265 -144 2344 79 7 10 chr1 237749970 237750273 -4914080 - AluSc SINE Alu -7 302 1 642 322 67 0 chr1 237750836 237751075 -4913278 + MIR SINE MIR 8 262 0 2099 98 0 90 chr1 237751457 237751792 -4912561 + AluSg SINE Alu 1 305 -5 2450 272 97 51 chr1 237752491 237753453 -4910900 + L2 LINE L2 1932 2937 -377 2846 178 8 4 chr1 237753455 237753933 -4910420 - MER66B LTR ERV1 0 486 7 509 239 239 68 chr1 237753944 237754283 -4910070 + L2 LINE L2 2916 3312 -1 388 227 16 47 chr1 237754807 237754935 -4909418 - L1MC5 LINE L1 -36 7925 7802 23 54 0 0 chr1 237754996 237755033 -4909320 + AT_rich Low_complexity Low_complexity 1 37 0 2470 57 14 3 chr1 237755364 237755661 -4908692 + AluY SINE Alu 1 300 -11 1164 268 68 29 chr1 237755788 237756277 -4908076 - L1MC/D LINE L1 -2019 5789 5282 429 365 56 28 chr1 237756279 237756638 -4907715 - L1MC/D LINE L1 -891 5255 4887 251 342 54 0 chr1 237757725 237757836 -4906517 + L2 LINE L2 3179 3295 -18 241 294 264 26 chr1 237757857 237758122 -4906231 + L3 LINE CR1 1132 1459 -118 2391 194 43 12 chr1 237758135 237758641 -4905712 + L1MD2 LINE L1 5429 5950 -409 561 180 58 105 chr1 237758642 237758814 -4905539 + L1MD2 LINE L1 6063 6226 -133 3259 133 50 31 chr1 237758816 237759396 -4904957 + LTR59 LTR ERV1 1 591 -6 566 151 76 8 chr1 237759397 237759516 -4904837 + L1MD1 LINE L1 6114 6240 -2 2449 50 0 0 chr1 237759639 237759951 -4904402 + AluY SINE Alu 1 312 0 212 297 34 51 chr1 237759951 237760069 -4904284 + L3 LINE CR1 1461 1576 -1 698 89 134 9 chr1 237760374 237760486 -4903867 + MER85 DNA T2_type 1 126 -13 1097 152 0 0 chr1 237760936 237761100 -4903253 + HUERS-P3 LTR ERV1 8755 8918 -1 3570 82 81 6 chr1 237761100 237761621 -4902732 + LTR9B LTR ERV1 1 560 -84 225 290 43 0 chr1 237761955 237762024 -4902329 - MIR SINE MIR -87 121 50 2121 111 4 0 chr1 237762073 237762387 -4901966 - AluSg SINE Alu 0 315 1 2772 162 17 2 chr1 237762415 237762835 -4901518 - MSTB LTR MaLR 0 426 1 26 0 0 0 chr1 237763164 237763190 -4901163 + AT_rich Low_complexity Low_complexity 1 26 0 2146 100 3 56 chr1 237763297 237763617 -4900736 + AluSg SINE Alu 1 303 -7 2673 91 30 30 chr1 237763810 237764174 -4900179 - THE1B LTR MaLR 0 364 1 259 125 11 171 chr1 237765223 237765273 -4899080 - MER116 DNA Mariner -6 74 42 2279 114 0 0 chr1 237765273 237765571 -4898782 + AluSp SINE Alu 1 298 -15 259 125 11 171 chr1 237765571 237765608 -4898745 - MER116 DNA Mariner -38 42 1 889 189 34 39 chr1 237765699 237765905 -4898448 - MER20 DNA MER1_type -13 206 2 2057 119 44 3 chr1 237766007 237766300 -4898053 + AluSx SINE Alu 1 305 -7 394 296 56 108 chr1 237766781 237767159 -4897194 + L2 LINE L2 2896 3253 -19 275 214 18 0 chr1 237767268 237767324 -4897029 - L3 LINE CR1 -19 1558 1502 1763 117 12 12 chr1 237767454 237767710 -4896643 + AluSx SINE Alu 44 299 -13 573 250 99 74 chr1 237769230 237769554 -4894799 - L2 LINE L2 0 3272 2941 1231 317 63 18 chr1 237769610 237770272 -4894081 - L2 LINE L2 -431 2883 2192 241 339 118 0 chr1 237770523 237770650 -4893703 + MIR SINE MIR 108 249 -13 1887 159 20 60 chr1 237770844 237770975 -4893378 - MER1B DNA MER1_type -2373 337 202 2082 120 3 25 chr1 237770975 237771291 -4893062 - AluSp SINE Alu -4 309 1 1887 159 20 60 chr1 237771291 237771510 -4892843 - MER1B DNA MER1_type -2508 202 1 204 333 0 15 chr1 237771936 237772002 -4892351 - L2 LINE L2 -3 3269 3205 346 330 86 26 chr1 237772092 237772325 -4892028 - L3 LINE CR1 -8 1569 1323 281 347 94 12 chr1 237772428 237772598 -4891755 - MIR SINE MIR -73 189 6 195 129 0 0 chr1 237773385 237773416 -4890937 + (A)n Simple_repeat Simple_repeat 1 31 0 1441 269 206 37 chr1 237773716 237774207 -4890146 - L2 LINE L2 -715 2599 2192 2335 89 0 22 chr1 237774207 237774521 -4889832 + AluSc SINE Alu 3 309 0 1441 269 206 37 chr1 237774521 237774806 -4889547 - L2 LINE L2 -1122 2192 1692 503 161 23 0 chr1 237774908 237774995 -4889358 + MER20 DNA MER1_type 118 206 -13 226 147 0 0 chr1 237775086 237775120 -4889233 + MER116 DNA Mariner 1 34 -46 2109 124 7 0 chr1 237775123 237775414 -4888939 - AluSq SINE Alu -20 293 1 221 171 0 71 chr1 237775977 237776047 -4888306 + (TA)n Simple_repeat Simple_repeat 1 65 0 350 250 0 22 chr1 237776050 237776142 -4888211 - L1MC4 LINE L1 -1339 6703 6614 392 230 0 8 chr1 237776146 237776191 -4888162 + (TA)n Simple_repeat Simple_repeat 1 45 -80 2233 83 10 7 chr1 237776191 237776481 -4887872 - AluSx SINE Alu -21 291 1 392 230 0 8 chr1 237776481 237776561 -4887792 + (TA)n Simple_repeat Simple_repeat 45 125 0 364 289 0 0 chr1 237776564 237776654 -4887699 - L1MC4 LINE L1 -1339 6703 6614 288 200 0 0 chr1 237776658 237776723 -4887630 + (TA)n Simple_repeat Simple_repeat 1 65 0 364 289 0 0 chr1 237776726 237776816 -4887537 - L1MC4 LINE L1 -1339 6703 6614 307 240 42 42 chr1 237776820 237776909 -4887444 - L1MC4 LINE L1 -1339 6703 6612 2214 89 10 7 chr1 237776909 237777200 -4887153 - AluSx SINE Alu -20 292 1 3839 145 5 0 chr1 237777700 237778272 -4886081 - L1PA16 LINE L1 -9 6157 5583 2385 67 3 13 chr1 237778910 237779208 -4885145 - AluY SINE Alu -16 295 1 1422 122 0 5 chr1 237779837 237780034 -4884319 + AluSg/x SINE Alu 78 273 -39 364 161 0 0 chr1 237780036 237780098 -4884255 + Alu SINE Alu 236 297 -3 23 0 0 0 chr1 237780860 237780883 -4883470 + AT_rich Low_complexity Low_complexity 1 23 0 534 100 0 0 chr1 237781050 237781120 -4883233 - AluSc SINE Alu -14 295 226 1865 91 4 4 chr1 237781140 237781407 -4882946 - AluSg1 SINE Alu 0 305 39 202 335 206 14 chr1 237781416 237781684 -4882669 + L2 LINE L2 747 1056 -2258 884 323 135 48 chr1 237781733 237782355 -4881998 + L2 LINE L2 1166 1841 -1473 48 60 0 0 chr1 237782355 237782438 -4881915 + AT_rich Low_complexity Low_complexity 1 83 0 * 330 181 14 42 chr1 237782368 237782512 -4881841 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 473 293 82 18 chr1 237782672 237783003 -4881350 - L1M4 LINE L1 -1308 4838 4487 418 288 148 38 chr1 237783203 237783634 -4880719 - L1MC4 LINE L1 -154 7888 7309 478 306 0 0 chr1 237783658 237783802 -4880551 - L1MC4 LINE L1 -591 7451 7308 1328 209 13 87 chr1 237783829 237784292 -4880061 + MLT1B LTR MaLR 1 467 0 1860 80 138 39 chr1 237784462 237784824 -4879529 - LTR14B LTR ERVK 0 608 211 264 65 0 43 chr1 237784812 237784858 -4879495 - LTR14B LTR ERVK -562 46 3 * 604 282 64 15 chr1 237784914 237785180 -4879173 - L1MC4 LINE L1 -938 7104 6826 275 311 47 14 chr1 237785174 237785322 -4879031 - L1MC4 LINE L1 -2047 5761 5609 * 223 304 0 0 chr1 237786657 237786713 -4877640 + GA-rich Low_complexity Low_complexity 3 58 0 450 148 23 0 chr1 237786810 237786898 -4877455 + L1MA5 LINE L1 6209 6298 -2 1027 326 106 36 chr1 237787479 237788261 -4876092 + L2 LINE L2 1859 2695 -619 1103 252 90 40 chr1 237788400 237788554 -4875799 + L1MC4 LINE L1 6459 6604 -1438 6219 84 44 35 chr1 237788554 237789513 -4874840 - L1PA10 LINE L1 -2 6166 5199 1103 252 90 40 chr1 237789513 237789782 -4874571 + L1MC4 LINE L1 6604 6903 -1139 249 139 0 0 chr1 237790076 237790119 -4874234 - U2 snRNA snRNA -145 43 1 1975 162 13 0 chr1 237791257 237791559 -4872794 - AluSx SINE Alu -4 308 3 4383 164 26 6 chr1 237791575 237792448 -4871905 - L1MB4 LINE L1 0 6180 5290 180 0 0 0 chr1 237792451 237792471 -4871882 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 3117 128 133 7 chr1 237795143 237795721 -4868632 - MER39B LTR ERV1 0 653 3 7136 43 2 9 chr1 237796139 237797797 -4866556 - L1PA5 LINE L1 0 6154 4521 21 0 0 0 chr1 237797923 237797944 -4866409 + AT_rich Low_complexity Low_complexity 1 21 0 1481 68 9 36 chr1 237798029 237798251 -4866102 + L1PA7 LINE L1 5939 6154 0 206 250 0 53 chr1 237798568 237798644 -4865709 + GA-rich Low_complexity Low_complexity 75 146 0 334 341 53 35 chr1 237798693 237798863 -4865490 + L3 LINE CR1 1388 1560 -17 206 174 11 174 chr1 237800108 237800200 -4864153 + MIR3 SINE MIR 123 199 -9 494 279 151 16 chr1 237800594 237800906 -4863447 - L1MC/D LINE L1 -2000 5808 5455 309 363 12 12 chr1 237800926 237801086 -4863267 - HAL1 LINE L1 -1175 1332 1173 1636 160 65 17 chr1 237801104 237801163 -4863190 - MER93b LTR ERV1 0 373 318 1609 246 38 68 chr1 237801163 237801794 -4862559 + LTR9 LTR ERV1 1 612 0 1636 160 65 17 chr1 237801794 237802004 -4862349 - MER93b LTR ERV1 -55 318 80 207 0 0 0 chr1 237802004 237802027 -4862326 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1636 160 65 17 chr1 237802027 237802112 -4862241 - MER93b LTR ERV1 -293 80 1 494 290 68 83 chr1 237802115 237802453 -4861900 - HAL1 LINE L1 -1344 1163 831 247 227 350 0 chr1 237803298 237803395 -4860958 - L2 LINE L2 -2 3311 3181 366 138 0 15 chr1 237803525 237803590 -4860763 + MADE1 DNA Mariner 17 80 0 194 255 0 0 chr1 237803885 237803932 -4860421 + L2 LINE L2 3267 3313 0 738 291 11 0 chr1 237803992 237804260 -4860093 - L1MDa LINE L1 -2468 3747 3477 540 257 23 55 chr1 237804961 237805346 -4859007 - L1MDa LINE L1 -2715 3500 3128 2208 135 3 0 chr1 237805374 237805685 -4858668 - AluSx SINE Alu 0 312 1 930 266 33 22 chr1 237805694 237806062 -4858291 - L1MDa LINE L1 -3379 2836 2465 253 194 20 51 chr1 237806081 237806179 -4858174 - L1MDa LINE L1 -4939 1276 1182 1154 240 70 141 chr1 237806231 237806648 -4857705 - L1MDa LINE L1 -5273 1123 678 527 95 0 0 chr1 237806648 237806722 -4857631 - FAM SINE Alu -8 177 104 1154 240 70 141 chr1 237806722 237807190 -4857163 - L1MDa LINE L1 -5718 678 233 297 318 52 32 chr1 237807200 237807354 -4856999 - L2 LINE L2 -1034 2280 2124 224 303 53 53 chr1 237807774 237807906 -4856447 + MIR SINE MIR 26 157 -105 24 53 0 0 chr1 237808003 237808041 -4856312 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr1 237808116 237808151 -4856202 + AT_rich Low_complexity Low_complexity 1 35 0 749 164 0 0 chr1 237808151 237808267 -4856086 - FLAM_C SINE Alu -27 116 1 26 64 0 0 chr1 237808928 237808975 -4855378 + AT_rich Low_complexity Low_complexity 1 47 0 266 275 180 12 chr1 237809363 237809607 -4854746 + L1ME4a LINE L1 5764 6048 -73 28 29 0 0 chr1 237809716 237809751 -4854602 + AT_rich Low_complexity Low_complexity 1 35 0 411 197 401 0 chr1 237809913 237810045 -4854308 + MER5A DNA MER1_type 5 189 0 646 269 25 30 chr1 237810275 237810476 -4853877 - MIR SINE MIR 0 262 63 7764 230 50 43 chr1 237810565 237812333 -4852020 + L1MA7 LINE L1 31 1786 -4564 2408 95 0 3 chr1 237812333 237812637 -4851716 + AluSq SINE Alu 1 303 -10 7764 230 50 43 chr1 237812637 237815560 -4848793 + L1MA7 LINE L1 1786 4429 -1921 920 207 79 92 chr1 237815560 237816021 -4848332 - MER66A LTR ERV1 -3 475 97 1311 134 78 16 chr1 237816077 237816383 -4847970 + L1MA7 LINE L1 4426 4750 -1600 448 207 78 0 chr1 237816376 237816492 -4847861 + L1 LINE L1 5223 5347 -799 * 4258 193 48 12 chr1 237816481 237818168 -4846185 + L1MA7 LINE L1 4739 6483 -12 2608 98 19 6 chr1 237818432 237818791 -4845562 - THE1B LTR MaLR 0 364 1 214 259 18 125 chr1 237818825 237818921 -4845432 - L2 LINE L2 -4 3309 3225 2147 116 16 13 chr1 237818921 237819232 -4845121 + AluSp SINE Alu 1 312 -1 214 259 18 125 chr1 237819232 237819247 -4845106 - L2 LINE L2 -88 3225 3210 417 39 0 0 chr1 237819644 237819695 -4844658 + (TG)n Simple_repeat Simple_repeat 2 52 0 1289 181 0 0 chr1 237819842 237820058 -4844295 - MLT1A1 LTR MaLR 0 365 150 952 219 0 0 chr1 237820058 237820227 -4844126 - FAM SINE Alu -13 172 4 715 140 0 52 chr1 237820237 237820373 -4843980 - MLT1A1 LTR MaLR -236 129 1 3094 126 38 27 chr1 237820618 237821044 -4843309 + MER4B LTR ERV1 1 605 -174 2369 64 0 0 chr1 237821044 237821349 -4843004 - AluY SINE Alu 0 305 1 3094 126 38 27 chr1 237821349 237821526 -4842827 + MER4B LTR ERV1 605 779 0 2668 95 18 11 chr1 237823104 237823484 -4840869 + L1PA11 LINE L1 5792 6174 0 278 306 20 41 chr1 237824756 237824854 -4839499 + MIR SINE MIR 7 102 -160 2562 91 9 0 chr1 237824970 237825320 -4839033 + THE1A LTR MaLR 1 353 -2 2832 186 41 4 chr1 237825671 237826210 -4838143 - MER89 LTR ERV1 0 559 1 22 35 0 0 chr1 237826326 237826355 -4837998 + AT_rich Low_complexity Low_complexity 1 29 0 411 268 68 36 chr1 237828900 237829150 -4835203 - L1MC4 LINE L1 -1029 7013 6756 209 182 0 0 chr1 237829266 237829299 -4835054 + polypyrimidine Low_complexity Low_complexity 6 38 0 628 310 33 25 chr1 237829321 237829563 -4834790 + MIR SINE MIR 19 262 0 209 32 0 32 chr1 237830232 237830263 -4834090 + (TTCCC)n Simple_repeat Simple_repeat 5 34 0 921 129 12 6 chr1 237830453 237830616 -4833737 - MER89 LTR ERV1 -1 558 395 189 0 0 0 chr1 237830786 237830807 -4833546 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2185 122 0 0 chr1 237832479 237832773 -4831580 - AluSq SINE Alu -19 294 1 210 306 122 50 chr1 237833040 237833220 -4831133 + MIR SINE MIR 27 219 -43 675 255 153 81 chr1 237833448 237834101 -4830252 - L1ME4a LINE L1 -96 6025 5325 512 225 108 144 chr1 237834926 237835481 -4828872 - MER34 LTR ERV1 -5 537 3 2981 130 13 21 chr1 237835988 237836466 -4827887 + L1MA4 LINE L1 5527 6000 -300 296 210 0 0 chr1 237836486 237836548 -4827805 + L1MB3 LINE L1 6091 6152 -31 6470 48 4 1 chr1 237837484 237838229 -4826124 + L1PA7 LINE L1 5402 6148 -6 218 383 47 0 chr1 237838897 237839004 -4825349 + L2 LINE L2 3178 3289 -24 356 335 95 6 chr1 237839138 237839317 -4825036 + MIR3 SINE MIR 11 205 -3 211 335 61 61 chr1 237839449 237839679 -4824674 - L2 LINE L2 0 3272 3043 236 352 50 33 chr1 237839975 237840137 -4824216 + MER5A DNA MER1_type 15 188 -1 399 323 32 0 chr1 237840179 237840334 -4824019 + MIR SINE MIR 54 213 -49 194 216 0 0 chr1 237840340 237840377 -4823976 - MER5B DNA MER1_type -10 168 132 2104 134 3 6 chr1 237840812 237841125 -4823228 + AluSx SINE Alu 1 312 0 272 281 55 0 chr1 237841537 237841701 -4822652 + (TA)n Simple_repeat Simple_repeat 1 173 0 261 164 41 0 chr1 237841797 237841870 -4822483 + (TA)n Simple_repeat Simple_repeat 2 77 0 181 0 33 33 chr1 237842016 237842046 -4822307 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1267 186 89 19 chr1 237842052 237842310 -4822043 - AluJo SINE Alu -34 278 3 1826 167 0 26 chr1 237842820 237842958 -4821395 + AluJb SINE Alu 6 146 -166 2306 99 0 0 chr1 237842958 237843251 -4821102 + AluY SINE Alu 2 294 -17 1826 167 0 26 chr1 237843251 237843423 -4820930 + AluJb SINE Alu 146 308 -4 358 241 80 64 chr1 237843848 237843948 -4820405 - MARNA DNA Mariner -252 334 228 1528 191 48 0 chr1 237843948 237844241 -4820112 + AluJo SINE Alu 1 307 -5 358 241 80 64 chr1 237844241 237844327 -4820026 - MARNA DNA Mariner -358 228 145 632 53 0 0 chr1 237844522 237844598 -4819755 + AluSc SINE Alu 197 272 -37 357 228 7 13 chr1 237844600 237844749 -4819604 + CT-rich Low_complexity Low_complexity 2 149 0 3240 197 18 56 chr1 237844995 237845712 -4818641 - LTR8 LTR ERV1 -1 690 1 22 35 0 0 chr1 237846346 237846375 -4817978 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 237847010 237847039 -4817314 + AT_rich Low_complexity Low_complexity 1 29 0 466 215 192 0 chr1 237847057 237847187 -4817166 - L2 LINE L2 -1 3271 3117 184 120 40 20 chr1 237847198 237847235 -4817118 + (CATA)n Simple_repeat Simple_repeat 2 42 -10 1954 106 220 28 chr1 237847235 237847594 -4816759 - MSTA LTR MaLR 0 428 1 184 120 40 20 chr1 237847594 237847606 -4816747 + (CATA)n Simple_repeat Simple_repeat 42 52 0 193 281 246 0 chr1 237847785 237847899 -4816454 - L2 LINE L2 -298 2974 2833 2436 170 120 22 chr1 237848227 237848517 -4815836 - LTR49 LTR ERV1 -1 594 334 2209 119 3 3 chr1 237848517 237848828 -4815525 + AluSq SINE Alu 1 311 -2 2436 170 120 22 chr1 237848828 237849077 -4815276 - LTR49 LTR ERV1 -261 334 2 825 183 40 29 chr1 237849215 237849390 -4814963 + MER5B DNA MER1_type 2 178 0 2146 179 64 114 chr1 237849986 237850685 -4813668 - MER4A LTR ERV1 0 664 1 783 128 15 30 chr1 237851343 237851476 -4812877 + FLAM_C SINE Alu 12 142 -1 24 63 0 16 chr1 237852717 237852740 -4811613 + AT_rich Low_complexity Low_complexity 1 23 -39 3256 92 24 21 chr1 237852740 237852807 -4811546 + L1PA13 LINE L1 5689 5754 -409 2092 124 0 23 chr1 237852807 237853113 -4811240 + AluSx SINE Alu 1 299 -13 3256 92 24 21 chr1 237853113 237853511 -4810842 + L1PA13 LINE L1 5754 6155 -8 24 63 0 16 chr1 237853511 237853550 -4810803 + AT_rich Low_complexity Low_complexity 23 62 0 712 289 65 8 chr1 237853932 237854178 -4810175 - MIR SINE MIR 0 262 3 561 225 117 0 chr1 237854362 237854473 -4809880 + FLAM_A SINE Alu 4 127 -6 269 261 0 31 chr1 237854661 237854726 -4809627 + L2 LINE L2 3200 3262 -10 203 195 24 0 chr1 237855500 237855541 -4808812 + GA-rich Low_complexity Low_complexity 3 44 0 341 312 9 0 chr1 237856986 237857095 -4807258 - MIR SINE MIR -1 261 152 233 307 80 58 chr1 237857126 237857351 -4807002 + L1M3e LINE L1 -723 4294966802 -6800 2687 202 93 15 chr1 237857763 237858549 -4805804 + L1M3e LINE L1 777 1787 -4516 222 325 100 0 chr1 237858549 237858627 -4805726 - MIR SINE MIR -160 102 17 637 134 9 54 chr1 237858627 237858739 -4805614 + MER5A DNA MER1_type 1 107 -82 712 243 72 81 chr1 237858859 237859193 -4805160 + MER46C DNA MER2_type 6 336 -2 238 224 134 26 chr1 237859228 237859357 -4804996 + MIR SINE MIR 43 184 -24 566 117 0 0 chr1 237859459 237859536 -4804817 + MADE1 DNA Mariner 3 79 -1 2206 105 48 0 chr1 237860448 237860743 -4803610 + AluSx SINE Alu 1 309 -3 1182 92 98 27 chr1 237860755 237860779 -4803574 - MER107 DNA MER1_type 0 197 176 180 0 0 0 chr1 237860779 237860799 -4803554 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1182 92 98 27 chr1 237860799 237860958 -4803395 - MER107 DNA MER1_type -21 176 1 24 32 0 0 chr1 237861592 237861623 -4802730 + AT_rich Low_complexity Low_complexity 1 31 0 253 320 160 20 chr1 237861656 237861806 -4802547 - MIR3 SINE MIR -27 181 11 21 36 0 0 chr1 237862030 237862058 -4802295 + AT_rich Low_complexity Low_complexity 1 28 0 288 308 38 53 chr1 237862519 237862652 -4801701 + MIR SINE MIR 22 152 -110 396 59 0 0 chr1 237862731 237862782 -4801571 + (CAT)n Simple_repeat Simple_repeat 2 52 0 468 0 0 0 chr1 237863329 237863381 -4800972 + (TG)n Simple_repeat Simple_repeat 2 53 0 1827 110 7 18 chr1 237864295 237864567 -4799786 + AluSc SINE Alu 34 302 -7 1783 162 0 7 chr1 237865000 237865290 -4799063 - AluJb SINE Alu -14 298 11 22 0 0 0 chr1 237866509 237866531 -4797822 + AT_rich Low_complexity Low_complexity 1 22 0 248 316 63 25 chr1 237866770 237866928 -4797425 + MER117 DNA MER1_type 18 181 -16 303 76 36 22 chr1 237867058 237867114 -4797239 + tRNA-Leu-CTG tRNA tRNA 1 51 -35 694 184 86 13 chr1 237867215 237867367 -4796986 - MER34C LTR ERV1 0 585 423 1789 172 3 7 chr1 237867396 237867686 -4796667 - AluJo SINE Alu -23 289 1 794 207 0 0 chr1 237867686 237867831 -4796522 - MER34B LTR ERV1 -145 420 276 1246 146 10 94 chr1 237867832 237868041 -4796312 - MER7A DNA MER2_type -2692 336 116 2103 110 0 32 chr1 237868041 237868377 -4795976 + AluSq SINE Alu 1 313 0 1246 146 10 94 chr1 237868377 237868465 -4795888 - MER7A DNA MER2_type -2912 116 22 1237 156 54 58 chr1 237868479 237868755 -4795598 - MER34B LTR ERV1 -286 279 5 835 300 68 57 chr1 237869216 237869641 -4794712 + L2 LINE L2 2511 2930 -383 261 0 0 0 chr1 237869641 237869670 -4794683 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 835 300 68 57 chr1 237869670 237869700 -4794653 + L2 LINE L2 2930 2958 -355 1942 117 0 19 chr1 237869700 237869965 -4794388 - AluSq SINE Alu -53 260 1 835 300 68 57 chr1 237869965 237870220 -4794133 + L2 LINE L2 2958 3228 -85 579 258 6 49 chr1 237870562 237870725 -4793628 + MIR SINE MIR 2 157 -105 1735 94 51 0 chr1 237870725 237870980 -4793373 + L1MA1 LINE L1 6035 6302 0 30 0 0 0 chr1 237870980 237871010 -4793343 + AT_rich Low_complexity Low_complexity 1 30 0 225 332 107 39 chr1 237871590 237871795 -4792558 + MIR SINE MIR 17 235 -27 501 226 67 51 chr1 237872016 237872183 -4792170 + L1MC4 LINE L1 6877 7049 -993 2950 9 0 0 chr1 237872183 237872500 -4791853 + AluYb8 SINE Alu 1 317 -1 501 226 67 51 chr1 237872500 237872527 -4791826 + L1MC4 LINE L1 7049 7074 -968 1008 166 18 12 chr1 237872549 237872718 -4791635 + FRAM SINE Alu 1 167 -9 703 211 0 0 chr1 237872755 237872883 -4791470 - AluSg/x SINE Alu -7 303 176 264 247 58 49 chr1 237873136 237873354 -4790999 + L1MEc LINE L1 1056 1276 -4939 1075 258 38 27 chr1 237873373 237873741 -4790612 + L1MEc LINE L1 2465 2836 -3379 2585 56 0 6 chr1 237873750 237874069 -4790284 + AluYb8 SINE Alu 1 317 -1 1026 160 18 12 chr1 237874118 237874287 -4790066 + FRAM SINE Alu 1 167 -9 2214 127 0 3 chr1 237874319 237874627 -4789726 - AluSc SINE Alu -2 307 1 1383 151 47 68 chr1 237874698 237874977 -4789376 + AluJo SINE Alu 21 293 -19 1160 194 108 0 chr1 237875256 237875534 -4788819 + L1 LINE L1 5096 5403 -743 310 329 165 0 chr1 237875546 237875704 -4788649 - MIR SINE MIR -24 238 55 4464 177 9 7 chr1 237875781 237876551 -4787802 + L1PA16 LINE L1 5382 6153 -13 346 321 155 0 chr1 237876928 237877096 -4787257 - MIR SINE MIR -14 248 55 1437 198 69 3 chr1 237878054 237878357 -4785996 - MER44D DNA MER2_type 0 609 17 1314 240 119 22 chr1 237878673 237879135 -4785218 - Charlie4a DNA MER1_type -1 507 1 2522 71 0 3 chr1 237879857 237880166 -4784187 - AluY SINE Alu -3 308 1 193 335 46 58 chr1 237880735 237880908 -4783445 - L2 LINE L2 -557 2757 2587 2095 111 0 20 chr1 237882038 237882336 -4782017 + AluSx SINE Alu 1 292 -20 194 300 20 0 chr1 237882696 237882746 -4781607 - L2 LINE L2 -19 3294 3244 266 306 41 20 chr1 237883573 237883671 -4780682 + MER91C DNA MER1_type 19 118 -22 308 283 125 0 chr1 237884334 237884454 -4779899 - MLT1G1 LTR MaLR -34 561 427 790 279 41 79 chr1 237884876 237885409 -4778944 - MER34 LTR ERV1 -29 513 1 216 0 0 0 chr1 237885558 237885582 -4778771 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2075 124 0 3 chr1 237885584 237885867 -4778486 - AluSx SINE Alu -30 282 1 1763 126 16 0 chr1 237886188 237886435 -4777918 - AluSq SINE Alu -23 290 40 2152 103 23 16 chr1 237887262 237887572 -4776781 + AluSx SINE Alu 1 312 0 23 33 0 0 chr1 237888124 237888154 -4776199 + AT_rich Low_complexity Low_complexity 1 30 0 739 231 24 76 chr1 237889291 237889563 -4774790 + MIR SINE MIR 5 261 -1 22 56 0 0 chr1 237890919 237890955 -4773398 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr1 237891516 237891552 -4772801 + AT_rich Low_complexity Low_complexity 1 36 0 246 275 12 0 chr1 237891552 237891632 -4772721 + MIR SINE MIR 128 208 -54 2038 124 3 7 chr1 237891862 237892168 -4772185 + AluSc SINE Alu 2 306 -3 615 259 17 6 chr1 237892213 237892387 -4771966 + MER5B DNA MER1_type 3 178 0 190 150 0 50 chr1 237892683 237892723 -4771630 - L3b LINE CR1 -350 1233 1196 388 329 126 24 chr1 237892898 237893065 -4771288 - L2 LINE L2 -5 3267 3084 2150 135 0 0 chr1 237893689 237893993 -4770360 - AluSx SINE Alu -8 304 1 354 240 70 45 chr1 237894011 237894253 -4770100 - L1ME4a LINE L1 -238 5883 5636 357 204 21 0 chr1 237895226 237895368 -4768985 + (TA)n Simple_repeat Simple_repeat 1 145 0 1196 210 22 18 chr1 237895372 237895648 -4768705 - AluJo SINE Alu -35 277 1 317 346 60 17 chr1 237895684 237895918 -4768435 + L2 LINE L2 2613 2856 -458 190 95 48 24 chr1 237896311 237896353 -4768000 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 2454 67 0 0 chr1 237896934 237897231 -4767122 - AluY SINE Alu -14 297 1 658 182 15 38 chr1 237897305 237897437 -4766916 - FLAM_C SINE Alu -4 129 1 1606 233 34 40 chr1 237897616 237898122 -4766231 - MLT1D LTR MaLR 0 505 3 3748 53 6 0 chr1 237898322 237898792 -4765561 + L1PA8 LINE L1 5700 6172 0 342 327 84 49 chr1 237898919 237899475 -4764878 - L1M4 LINE L1 -3118 3028 2453 544 191 86 13 chr1 237899614 237899766 -4764587 - MER106B DNA MER1_type 0 1059 897 247 182 0 0 chr1 237899771 237899815 -4764538 - MER106A DNA MER1_type -192 44 1 189 0 0 0 chr1 237900459 237900480 -4763873 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 333 0 0 0 chr1 237900479 237900516 -4763837 + (TG)n Simple_repeat Simple_repeat 2 38 0 419 299 34 14 chr1 237901234 237901381 -4762972 + MIR3 SINE MIR 44 193 -15 396 183 8 150 chr1 237901751 237901871 -4762482 + MER34 LTR ERV1 9 114 -428 502 206 109 106 chr1 237901878 237902246 -4762107 + MER34C LTR ERV1 217 585 0 2117 122 0 16 chr1 237902552 237902855 -4761498 + AluSx SINE Alu 1 298 -14 240 256 12 23 chr1 237903721 237903791 -4760562 + CT-rich Low_complexity Low_complexity 4 74 -14 1613 164 20 31 chr1 237903791 237904083 -4760270 - AluJo SINE Alu -9 303 15 240 256 12 23 chr1 237904083 237904098 -4760255 + CT-rich Low_complexity Low_complexity 74 88 0 209 250 0 14 chr1 237904475 237904547 -4759806 + CT-rich Low_complexity Low_complexity 2 72 0 2129 125 3 0 chr1 237904548 237904859 -4759494 - AluSx SINE Alu 0 312 1 1961 154 0 16 chr1 237905294 237905600 -4758753 - AluSx SINE Alu -11 301 1 402 262 69 0 chr1 237905760 237905899 -4758454 - MIR SINE MIR -64 198 42 22 0 0 0 chr1 237906735 237906757 -4757596 + AT_rich Low_complexity Low_complexity 1 22 0 2407 287 72 5 chr1 237909234 237910761 -4753592 - L1ME3A LINE L1 -15 6155 4523 476 247 72 23 chr1 237910769 237911032 -4753321 - L1ME3A LINE L1 -3132 3014 2739 28 29 0 0 chr1 237911033 237911068 -4753285 + AT_rich Low_complexity Low_complexity 1 35 0 2257 117 0 0 chr1 237911329 237911627 -4752726 - AluSg SINE Alu -12 298 1 28 0 0 0 chr1 237912103 237912131 -4752222 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 237912342 237912367 -4751986 + AT_rich Low_complexity Low_complexity 1 25 0 828 191 0 0 chr1 237912393 237912534 -4751819 - FRAM SINE Alu -38 138 1 251 408 32 8 chr1 237912634 237912759 -4751594 - L2 LINE L2 -5 3267 3140 1067 198 204 34 chr1 237912765 237913210 -4751143 - HsTC2a DNA Tc2 -216 528 8 22 56 0 0 chr1 237913902 237913938 -4750415 + AT_rich Low_complexity Low_complexity 1 36 0 1021 135 48 24 chr1 237913954 237914161 -4750192 - L1MA8 LINE L1 -30 6261 6050 892 105 52 11 chr1 237914529 237914945 -4749408 + (TAGA)n Simple_repeat Simple_repeat 1 432 0 816 239 65 99 chr1 237914950 237915322 -4749031 - MLT1A1 LTR MaLR -1 364 6 881 45 0 0 chr1 237916088 237916198 -4748155 - L1PA5 LINE L1 -5 6149 6040 378 255 56 142 chr1 237916885 237916996 -4747357 + MIR SINE MIR 7 126 -136 207 0 0 0 chr1 237916996 237917019 -4747334 + (TGG)n Simple_repeat Simple_repeat 3 25 0 2217 95 3 0 chr1 237917021 237917306 -4747047 - AluSq SINE Alu -27 286 1 378 255 56 142 chr1 237917306 237917458 -4746895 + MIR SINE MIR 127 250 -12 2671 39 0 3 chr1 237918082 237918390 -4745963 + AluY SINE Alu 1 307 -4 933 161 6 72 chr1 237918400 237918580 -4745773 + FRAM SINE Alu 1 168 -8 2326 107 0 0 chr1 237918581 237918879 -4745474 + AluSg SINE Alu 1 298 -12 843 131 15 0 chr1 237919119 237919249 -4745104 - FLAM_C SINE Alu 0 133 2 821 336 101 52 chr1 237919607 237920979 -4743374 + L2 LINE L2 1315 2753 -561 909 153 48 66 chr1 237922197 237922554 -4741799 - MSTD LTR MaLR 0 457 54 1652 120 120 8 chr1 237922554 237922813 -4741540 - AluSg1 SINE Alu -21 288 1 909 153 48 66 chr1 237922813 237922867 -4741486 - MSTD LTR MaLR -403 54 1 847 196 62 13 chr1 237922953 237923197 -4741156 - LTR56 LTR ERV1 0 445 199 548 53 27 0 chr1 237923222 237923297 -4741056 - L1PA7 LINE L1 -1 6153 6077 1212 141 14 9 chr1 237923297 237923517 -4740836 - LTR56 LTR ERV1 -216 229 9 1437 157 44 4 chr1 237923928 237924202 -4740151 + MER49 LTR ERV1 1 285 -638 481 198 0 28 chr1 237924194 237924300 -4740053 + MER4E LTR ERV1 62 164 -615 * 1457 205 22 36 chr1 237924307 237924396 -4739957 + MER4D LTR ERV1 548 637 -266 2485 38 3 0 chr1 237924396 237924687 -4739666 + AluY SINE Alu 1 292 -19 1457 205 22 36 chr1 237924687 237924958 -4739395 + MER4D LTR ERV1 637 903 0 351 0 0 0 chr1 237925141 237925180 -4739173 + (TG)n Simple_repeat Simple_repeat 2 40 0 1309 198 22 18 chr1 237925278 237925551 -4738802 - AluJo SINE Alu -15 297 24 545 266 58 0 chr1 237925556 237925695 -4738658 + MIR SINE MIR 95 241 -21 508 304 47 0 chr1 237928926 237929074 -4735279 - MIR SINE MIR -38 224 70 284 250 83 0 chr1 237929475 237929547 -4734806 - L2 LINE L2 -1 3312 3235 279 0 0 0 chr1 237929616 237929647 -4734706 + (TG)n Simple_repeat Simple_repeat 2 32 0 440 148 0 33 chr1 237929648 237929770 -4734583 + (TA)n Simple_repeat Simple_repeat 1 118 0 22 0 0 0 chr1 237930607 237930629 -4733724 + AT_rich Low_complexity Low_complexity 1 22 0 334 295 245 5 chr1 237931781 237931981 -4732372 - MIR SINE MIR 0 262 15 355 160 9 38 chr1 237933518 237933608 -4730745 - LTR41 LTR ERVL 0 795 704 470 169 17 68 chr1 237933738 237933856 -4730497 + MER53 DNA DNA 78 189 0 555 260 17 11 chr1 237934099 237934276 -4730077 - LTR41 LTR ERVL -594 179 2 1588 181 11 4 chr1 237935337 237935608 -4728745 - MLT1A1 LTR MaLR 0 365 93 209 128 21 64 chr1 237936380 237936427 -4727926 - L2 LINE L2 0 3313 3269 508 254 75 50 chr1 237936540 237936741 -4727612 - MIR SINE MIR -29 233 28 186 71 0 0 chr1 237937998 237938026 -4726327 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 184 140 18 35 chr1 237938053 237938110 -4726243 + CT-rich Low_complexity Low_complexity 4 59 0 342 0 0 0 chr1 237938449 237938487 -4725866 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 2133 110 3 0 chr1 237938487 237938769 -4725584 - AluSx SINE Alu -29 283 1 1610 171 0 0 chr1 237938774 237939032 -4725321 - AluSx SINE Alu -5 307 50 379 279 101 48 chr1 237939329 237939706 -4724647 - HAL1 LINE L1 -969 1538 1142 1044 191 11 5 chr1 237941478 237941666 -4722687 - MER20 DNA MER1_type 0 219 31 648 274 52 52 chr1 237941729 237942058 -4722295 + L1ME1 LINE L1 4105 4433 -1713 260 174 0 0 chr1 237942084 237942130 -4722223 + L1ME1 LINE L1 4552 4597 -1549 396 155 0 0 chr1 237942925 237942996 -4721357 + CT-rich Low_complexity Low_complexity 3 73 0 2031 139 3 7 chr1 237943978 237944279 -4720074 + AluSx SINE Alu 1 300 -12 769 186 23 0 chr1 237944294 237944423 -4719930 + FLAM_A SINE Alu 1 132 -1 22 0 0 0 chr1 237945501 237945523 -4718830 + AT_rich Low_complexity Low_complexity 1 22 0 1817 244 3 5 chr1 237945595 237945980 -4718373 + L1ME1 LINE L1 5485 5868 -298 284 272 49 12 chr1 237945980 237946061 -4718292 + L1MC/D LINE L1 5777 5860 -499 299 259 49 12 chr1 237946072 237946153 -4718200 + L1MC/D LINE L1 5777 5860 -499 325 250 43 11 chr1 237946164 237946256 -4718097 + L1MD2 LINE L1 5777 5871 -488 352 237 31 41 chr1 237946256 237946353 -4718000 + L1MD2 LINE L1 5777 5872 -298 * 1143 247 88 34 chr1 237946352 237946815 -4717538 + L1ME1 LINE L1 5732 6163 -3 288 0 0 0 chr1 237947758 237947790 -4716563 + (TC)n Simple_repeat Simple_repeat 2 33 0 1851 177 57 17 chr1 237948303 237948654 -4715699 + MLT1A1 LTR MaLR 1 365 0 256 296 0 42 chr1 237948698 237948769 -4715584 + L2 LINE L2 3203 3270 -2 1704 209 89 25 chr1 237949326 237949762 -4714591 + MLT1C LTR MaLR 1 464 -3 1948 134 0 0 chr1 237950626 237950950 -4713403 + AluSx SINE Alu 22 345 0 231 284 147 0 chr1 237951147 237951256 -4713097 - MIR SINE MIR -127 135 11 269 26 0 26 chr1 237951306 237951345 -4713008 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 640 315 36 14 chr1 237952694 237952916 -4711437 - MIR SINE MIR -17 245 19 8983 108 45 13 chr1 237953202 237954006 -4710347 - Tigger1 DNA MER2_type -1 2417 1550 2066 102 27 31 chr1 237954006 237954300 -4710053 - AluSq SINE Alu -20 293 1 8983 108 45 13 chr1 237954300 237954847 -4709506 - Tigger1 DNA MER2_type -868 1550 1022 2599 149 22 57 chr1 237954848 237955358 -4708995 - LTR22B LTR ERVK 0 492 1 21049 108 23 13 chr1 237955358 237956453 -4707900 - HERVK22 LTR ERVK 0 6837 5755 2231 98 0 38 chr1 237956453 237956769 -4707584 + AluY SINE Alu 1 304 -7 21049 108 23 13 chr1 237956769 237958820 -4705533 - HERVK22 LTR ERVK -1082 5755 2327 5162 106 28 5 chr1 237959225 237959969 -4704384 - HERVK22 LTR ERVK -6075 762 2 2061 199 69 13 chr1 237959975 237960453 -4703900 - LTR22 LTR ERVK -4 505 1 2011 148 6 0 chr1 237960453 237960771 -4703582 - Tigger1 DNA MER2_type -1392 1026 707 2805 72 3 6 chr1 237960772 237961132 -4703221 - LTR7 LTR ERV1 -2 448 90 1405 71 0 6 chr1 237961140 237961323 -4703030 - LTR7 LTR ERV1 -268 182 1 3399 135 90 61 chr1 237961324 237961548 -4702805 - Tigger1 DNA MER2_type -1711 707 491 2148 114 0 0 chr1 237961548 237961829 -4702524 + AluSx SINE Alu 5 285 -27 3399 135 90 61 chr1 237961829 237962291 -4702062 - Tigger1 DNA MER2_type -1927 491 1 236 238 79 0 chr1 237963196 237963259 -4701094 + MER103 DNA DNA 32 99 -67 1020 176 0 0 chr1 237963449 237963602 -4700751 + AluJb SINE Alu 133 285 -27 281 26 26 0 chr1 237963610 237963648 -4700705 + (TG)n Simple_repeat Simple_repeat 2 40 0 * 357 116 0 0 chr1 237963647 237963716 -4700637 + (TA)n Simple_repeat Simple_repeat 2 70 0 792 127 0 0 chr1 237963736 237963901 -4700452 + (TA)n Simple_repeat Simple_repeat 2 166 0 353 248 139 0 chr1 237963922 237964023 -4700330 + L1ME2 LINE L1 5763 5877 -287 241 360 27 0 chr1 237964030 237964141 -4700212 - L2 LINE L2 -293 2979 2866 1698 193 11 23 chr1 237964396 237964744 -4699609 + MLT2C1 LTR ERVL 1 344 -53 2391 136 97 12 chr1 237964788 237965199 -4699154 + Tigger2 DNA MER2_type 2273 2718 0 404 105 0 0 chr1 237965199 237965256 -4699097 + MLT2C1 LTR ERVL 464 520 0 309 368 84 21 chr1 237966532 237966771 -4697582 - L3 LINE CR1 -393 1184 931 383 271 142 40 chr1 237966781 237967006 -4697347 + MIR SINE MIR 2 249 -13 421 304 100 68 chr1 237967040 237967381 -4696972 + L3 LINE CR1 371 727 -850 2202 79 13 40 chr1 237967381 237967685 -4696668 - AluY SINE Alu -15 296 1 421 304 100 68 chr1 237967685 237967724 -4696629 + L3 LINE CR1 727 763 -814 1827 197 9 63 chr1 237967770 237967817 -4696536 - MER89 LTR ERV1 0 559 511 2554 153 57 2 chr1 237967817 237968221 -4696132 - MSTB LTR MaLR 0 426 1 1827 197 9 63 chr1 237968221 237968697 -4695656 - MER89 LTR ERV1 -48 511 2 224 279 15 0 chr1 237968837 237968905 -4695448 + L2 LINE L2 3245 3313 0 405 255 124 50 chr1 237968960 237969121 -4695232 + L3 LINE CR1 1317 1489 -88 2193 120 7 0 chr1 237969399 237969707 -4694646 - AluSx SINE Alu -2 310 1 44 0 0 0 chr1 237969934 237969978 -4694375 + AT_rich Low_complexity Low_complexity 1 44 0 719 196 0 0 chr1 237969986 237970098 -4694255 + FRAM SINE Alu 33 144 -32 200 86 29 0 chr1 237970098 237970133 -4694220 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 208 292 23 64 chr1 237970797 237970981 -4693372 - MIR SINE MIR -46 216 44 2155 186 36 27 chr1 237971669 237972085 -4692268 + L1PB4 LINE L1 5706 6128 -28 2169 112 0 0 chr1 237972085 237972372 -4691981 + AluSx SINE Alu 1 287 -25 2155 186 36 27 chr1 237972372 237972400 -4691953 + L1PB4 LINE L1 6128 6154 -2 1116 176 24 103 chr1 237972423 237972606 -4691747 - MER33 DNA MER1_type -2261 324 177 2218 88 11 0 chr1 237972606 237972890 -4691463 + AluSp SINE Alu 1 287 -26 1116 176 24 103 chr1 237972890 237973036 -4691317 - MER33 DNA MER1_type -2408 177 21 303 28 0 0 chr1 237973524 237973560 -4690793 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 2164 97 4 0 chr1 237973718 237973997 -4690356 + AluSx SINE Alu 22 301 -11 250 318 133 30 chr1 237974001 237974234 -4690119 - L2 LINE L2 -197 3075 2819 598 126 11 0 chr1 237974602 237974689 -4689664 + FLAM_A SINE Alu 35 122 -20 236 264 0 69 chr1 237974764 237974851 -4689502 + L1ME4a LINE L1 5936 6016 -105 279 190 0 0 chr1 237975026 237975084 -4689269 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 294 266 105 28 chr1 237976407 237976550 -4687803 - L3 LINE CR1 -107 1470 1317 4334 107 29 10 chr1 237976597 237976954 -4687399 - L1PB1 LINE L1 -1 6150 5774 633 38 0 0 chr1 237976954 237977034 -4687319 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 4334 107 29 10 chr1 237977034 237977296 -4687057 - L1PB1 LINE L1 -377 5774 5519 217 352 35 42 chr1 237977749 237977891 -4686462 - MIR SINE MIR -62 200 60 342 304 16 24 chr1 237979415 237979540 -4684813 - L2 LINE L2 -967 2347 2224 207 278 28 0 chr1 237979752 237979824 -4684529 + CT-rich Low_complexity Low_complexity 2 75 0 2079 146 0 0 chr1 237979987 237980288 -4684065 - AluSx SINE Alu -11 301 1 831 164 0 15 chr1 237980858 237980992 -4683361 - FLAM_C SINE Alu 0 133 2 2384 87 0 3 chr1 237981146 237981455 -4682898 + AluY SINE Alu 1 308 -3 884 308 102 15 chr1 237981601 237982090 -4682263 + L2 LINE L2 2780 3312 -1 2417 92 0 3 chr1 237982125 237982428 -4681925 - AluSg SINE Alu -8 302 1 429 163 0 70 chr1 237982823 237982909 -4681444 + 7SK RNA RNA 114 193 0 227 316 10 31 chr1 237983752 237983850 -4680503 + L2 LINE L2 2909 3004 -268 321 220 113 57 chr1 237983891 237984032 -4680321 + L1ME4a LINE L1 5710 5858 -263 25 31 0 0 chr1 237984059 237984091 -4680262 + AT_rich Low_complexity Low_complexity 1 32 0 397 290 129 24 chr1 237984107 237984355 -4679998 - MLT1J LTR MaLR 0 511 238 308 301 151 7 chr1 237984746 237984892 -4679461 + MIR SINE MIR 23 189 -73 2240 124 0 0 chr1 237985109 237985408 -4678945 + AluSx SINE Alu 1 299 -13 23 54 0 0 chr1 237985482 237985519 -4678834 + AT_rich Low_complexity Low_complexity 1 37 0 1832 133 58 14 chr1 237986923 237987217 -4677136 + AluSx SINE Alu 1 307 -5 1900 224 139 30 chr1 237987229 237987666 -4676687 + MER119 DNA MER1_type 1 507 -76 2321 46 3 3 chr1 237987666 237987977 -4676376 - AluY SINE Alu 0 311 1 1900 224 139 30 chr1 237987977 237988064 -4676289 + MER119 DNA MER1_type 507 583 0 21 36 0 0 chr1 237988381 237988409 -4675944 + AT_rich Low_complexity Low_complexity 1 28 0 2252 119 0 0 chr1 237988718 237989030 -4675323 - AluSx SINE Alu 0 312 1 1572 109 100 13 chr1 237989679 237989935 -4674418 + AluSc SINE Alu 29 304 0 852 173 261 15 chr1 237990048 237990308 -4674045 - MER33 DNA MER1_type 0 324 1 639 256 119 12 chr1 237990328 237990488 -4673865 + MER5A DNA MER1_type 13 189 0 725 186 57 83 chr1 237990498 237990566 -4673787 + MER5A DNA MER1_type 1 69 -120 1857 155 0 14 chr1 237990566 237990889 -4673464 - AluJo SINE Alu 0 312 5 725 186 57 83 chr1 237990889 237991013 -4673340 + MER5A DNA MER1_type 69 188 -1 256 327 129 32 chr1 237991273 237991490 -4672863 - MIR SINE MIR 0 262 25 198 0 0 0 chr1 237991644 237991666 -4672687 + (CA)n Simple_repeat Simple_repeat 2 23 0 2171 120 0 0 chr1 237991676 237991967 -4672386 - AluSx SINE Alu -21 291 1 438 234 146 32 chr1 237992166 237992324 -4672029 - MER97c DNA MER1_type? -914 176 1 13204 96 17 1 chr1 237994017 237996537 -4667816 - L1PA7 LINE L1 -2 6152 3589 11568 44 7 7 chr1 237996534 237998660 -4665693 - L1PA5 LINE L1 -1 6153 4020 * 17844 140 23 91 chr1 237998662 238002441 -4661912 - L1PA7 LINE L1 -2612 3534 13 321 26 0 0 chr1 238002723 238002761 -4661592 + (A)n Simple_repeat Simple_repeat 1 38 0 243 333 10 20 chr1 238003566 238003668 -4660685 - MER5B DNA MER1_type -76 102 2 556 283 34 0 chr1 238003851 238004028 -4660325 + MIR SINE MIR 72 254 -8 2859 104 0 8 chr1 238004028 238004393 -4659960 + THE1B LTR MaLR 1 362 -2 371 64 0 0 chr1 238004489 238004536 -4659817 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5488 136 5 22 chr1 238005168 238005972 -4658381 + MER54B LTR ERVL 1 790 -3 21 0 0 0 chr1 238007183 238007204 -4657149 + AT_rich Low_complexity Low_complexity 1 21 0 257 289 21 10 chr1 238007775 238007872 -4656481 + CT-rich Low_complexity Low_complexity 2 99 0 2527 60 0 10 chr1 238008158 238008472 -4655881 + AluY SINE Alu 1 311 0 2214 64 167 6 chr1 238010175 238010487 -4653866 + THE1B LTR MaLR 1 362 -2 371 240 54 64 chr1 238010637 238010695 -4653658 - L1ME4a LINE L1 -206 5915 5858 2170 116 0 7 chr1 238010695 238010996 -4653357 - AluSg SINE Alu -11 299 1 371 240 54 64 chr1 238010996 238011141 -4653212 - L1ME4a LINE L1 -263 5858 5714 1628 174 0 43 chr1 238011300 238011604 -4652749 + AluJb SINE Alu 21 311 -1 259 262 74 74 chr1 238011605 238011754 -4652599 + L1ME1 LINE L1 275 423 -6000 1193 282 114 39 chr1 238012003 238012828 -4651525 + L1ME1 LINE L1 822 1706 -4899 33230 103 12 53 chr1 238012831 238019240 -4645113 + L1PA7 LINE L1 12 6149 -5 1218 231 34 9 chr1 238019240 238019560 -4644793 + MLT1D LTR MaLR 120 447 -58 1004 176 0 6 chr1 238019583 238019765 -4644588 + L1MD1 LINE L1 6062 6242 0 6177 252 80 40 chr1 238019856 238021903 -4642450 + L1ME1 LINE L1 2008 3971 -2990 276 30 0 0 chr1 238021903 238021936 -4642417 + (TG)n Simple_repeat Simple_repeat 2 34 0 6177 252 80 40 chr1 238021936 238024589 -4639764 + L1ME1 LINE L1 3971 6958 -3 2021 117 0 11 chr1 238025630 238025903 -4638450 + AluSx SINE Alu 5 274 -38 21 0 0 0 chr1 238025985 238026006 -4638347 + AT_rich Low_complexity Low_complexity 1 21 0 355 302 103 9 chr1 238026136 238026252 -4638101 - L2 LINE L2 0 3313 3187 213 265 0 0 chr1 238026339 238026388 -4637965 + L2 LINE L2 2226 2274 -1040 545 276 89 39 chr1 238026424 238026627 -4637726 + MIR SINE MIR 8 220 -42 2186 130 3 0 chr1 238026795 238027102 -4637251 - AluSx SINE Alu -4 308 1 32 0 0 0 chr1 238027324 238027356 -4636997 + AT_rich Low_complexity Low_complexity 1 32 0 31 0 0 0 chr1 238027400 238027431 -4636922 + AT_rich Low_complexity Low_complexity 1 31 0 1872 136 6 86 chr1 238027433 238027772 -4636581 + AluSx SINE Alu 1 312 0 205 366 15 53 chr1 238028000 238028131 -4636222 + L2 LINE L2 2918 3043 -229 1802 141 6 78 chr1 238028249 238028582 -4635771 + AluSq SINE Alu 1 309 -4 1523 114 43 0 chr1 238028584 238028795 -4635558 + AluSq SINE Alu 1 220 -93 396 82 0 0 chr1 238028830 238028891 -4635462 + (GA)n Simple_repeat Simple_repeat 2 62 0 627 222 108 17 chr1 238030755 238030931 -4633422 - LTR47A LTR ERVL 0 452 261 1603 189 25 0 chr1 238030959 238031240 -4633113 - AluJb SINE Alu -24 288 1 3210 126 11 2 chr1 238034136 238034580 -4629773 - MER83 LTR ERV1 0 448 1 243 244 0 0 chr1 238036366 238036444 -4627909 + (TA)n Simple_repeat Simple_repeat 1 78 0 324 223 187 78 chr1 238036457 238036623 -4627730 - MIR SINE MIR -67 195 12 34 55 0 0 chr1 238037161 238037216 -4627137 + AT_rich Low_complexity Low_complexity 1 55 0 572 189 90 9 chr1 238037219 238037330 -4627023 - 5S rRNA rRNA -1 120 1 251 154 0 19 chr1 238037956 238038008 -4626345 + GA-rich Low_complexity Low_complexity 3 53 0 245 256 56 56 chr1 238038026 238038064 -4626289 + MIR3 SINE MIR 85 122 -86 3876 109 49 80 chr1 238038064 238038718 -4625635 - MER51A LTR ERV1 0 634 1 245 256 56 56 chr1 238038718 238038769 -4625584 + MIR3 SINE MIR 121 174 -34 185 308 0 0 chr1 238038817 238038869 -4625484 - MIR SINE MIR -109 153 102 2287 108 13 0 chr1 238039473 238039779 -4624574 + AluSx SINE Alu 3 312 0 389 233 233 8 chr1 238040005 238040125 -4624228 + MIR SINE MIR 103 249 -13 2367 92 0 7 chr1 238040275 238040578 -4623775 - AluSc SINE Alu -8 301 1 4241 144 9 26 chr1 238040969 238041250 -4623103 + L1PB4 LINE L1 5472 5756 -400 2323 98 0 0 chr1 238041250 238041547 -4622806 + AluSx SINE Alu 1 297 -15 4241 144 9 26 chr1 238041547 238041961 -4622392 + L1PB4 LINE L1 5756 6155 -1 259 273 182 7 chr1 238042678 238042821 -4621532 - MIR SINE MIR -32 230 63 1276 185 44 12 chr1 238043273 238043522 -4620831 - AluJo SINE Alu -6 306 50 6299 143 22 5 chr1 238043787 238045498 -4618855 - L1PB1 LINE L1 0 6151 4416 231 302 195 0 chr1 238045574 238045779 -4618574 + L1MC/D LINE L1 5626 5870 -1938 423 340 7 27 chr1 238046116 238046266 -4618087 + MIR3 SINE MIR 31 177 -31 872 214 80 38 chr1 238046317 238046555 -4617798 - MIR SINE MIR 0 262 15 217 304 14 0 chr1 238047350 238047419 -4616934 - MIR SINE MIR -66 196 127 295 348 0 50 chr1 238047830 238047849 -4616504 - MER5A DNA MER1_type -3 186 168 3319 149 35 64 chr1 238047849 238048472 -4615881 + MER6A DNA MER2_type 1 605 0 295 348 0 50 chr1 238048472 238048613 -4615740 - MER5A DNA MER1_type -21 168 34 25 0 0 0 chr1 238048964 238048989 -4615364 + AT_rich Low_complexity Low_complexity 1 25 0 4765 47 2 5 chr1 238049497 238050050 -4614303 - L1PA5 LINE L1 -1 6153 5603 426 138 0 0 chr1 238051085 238051150 -4613203 - L1MB7 LINE L1 -9 6175 6111 935 129 0 0 chr1 238051150 238051282 -4613071 + AluSq/x SINE Alu 2 133 -179 21 0 0 0 chr1 238051282 238051303 -4613050 + AT_rich Low_complexity Low_complexity 1 21 0 3693 175 70 48 chr1 238051303 238052161 -4612192 - L1MB7 LINE L1 -57 6127 5236 332 254 0 0 chr1 238052161 238052224 -4612129 - FLAM SINE Alu -7 126 64 237 266 78 0 chr1 238053033 238053097 -4611256 - L2 LINE L2 -3 3310 3242 295 212 253 0 chr1 238053163 238053262 -4611091 + L2 LINE L2 3189 3312 -1 251 283 151 31 chr1 238053307 238053466 -4610887 - MIR SINE MIR -65 197 20 314 51 0 0 chr1 238053797 238053836 -4610517 + L1MB2 LINE L1 6097 6135 -36 2253 103 3 0 chr1 238053924 238054215 -4610138 + AluSg SINE Alu 2 293 -17 218 322 58 58 chr1 238054215 238054336 -4610017 - L2 LINE L2 -230 3042 2922 2581 137 16 5 chr1 238054800 238055186 -4609167 + L1PA16 LINE L1 5768 6157 -9 1917 102 54 45 chr1 238056157 238056274 -4608079 + L1MA5A LINE L1 5956 6070 -227 3235 129 56 40 chr1 238056274 238056394 -4607959 - MER1A DNA MER1_type -2173 527 410 2364 89 0 3 chr1 238056394 238056697 -4607656 - AluSx SINE Alu 0 312 11 3235 129 56 40 chr1 238056697 238057095 -4607258 - MER1A DNA MER1_type -2290 410 1 1917 102 54 45 chr1 238057095 238057309 -4607044 + L1MA5A LINE L1 6070 6290 -7 22 70 0 0 chr1 238058023 238058066 -4606287 + AT_rich Low_complexity Low_complexity 1 43 0 2489 59 3 13 chr1 238058209 238058516 -4605837 + AluY SINE Alu 1 304 -7 1216 109 0 0 chr1 238059092 238059248 -4605105 + AluSg/x SINE Alu 126 281 -31 429 70 0 0 chr1 238059260 238059317 -4605036 + (CA)n Simple_repeat Simple_repeat 2 58 0 2292 104 0 0 chr1 238060244 238060543 -4603810 + AluSq SINE Alu 1 299 -14 189 0 0 0 chr1 238060771 238060792 -4603561 + (TG)n Simple_repeat Simple_repeat 1 21 0 1988 121 7 0 chr1 238060792 238061072 -4603281 - AluSq SINE Alu -31 282 1 222 83 111 0 chr1 238061072 238061108 -4603245 - L2 LINE L2 -6 3307 3268 250 105 70 23 chr1 238061495 238061581 -4602772 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 2315 94 7 0 chr1 238062105 238062402 -4601951 - AluSx SINE Alu -13 299 1 299 313 156 44 chr1 238062772 238063273 -4601080 - L2 LINE L2 -2548 766 210 677 142 4 3 chr1 238064165 238064406 -4599947 - AluJb SINE Alu -7 305 1 741 271 42 52 chr1 238064833 238065143 -4599210 - MLT1J1 LTR MaLR -117 329 23 2148 136 0 0 chr1 238066077 238066378 -4597975 + AluSx SINE Alu 1 301 -11 645 224 8 8 chr1 238066782 238066907 -4597446 + FLAM_C SINE Alu 2 126 -7 463 279 101 13 chr1 238066919 238067077 -4597276 - MIR SINE MIR -76 186 15 1641 151 16 56 chr1 238067172 238067477 -4596876 + AluJo SINE Alu 6 298 -14 29 70 0 0 chr1 238067589 238067646 -4596707 + AT_rich Low_complexity Low_complexity 1 57 0 194 238 0 63 chr1 238069743 238069806 -4594547 - MIR3 SINE MIR -4 204 146 558 293 96 5 chr1 238071364 238071552 -4592801 + MIR SINE MIR 58 262 0 258 275 109 22 chr1 238071878 238072016 -4592337 - MIR SINE MIR -66 196 47 1872 146 3 19 chr1 238072174 238072482 -4591871 + AluSx SINE Alu 1 303 -9 8519 60 1 0 chr1 238072497 238073554 -4590799 + L1P LINE L1 606 1663 -4483 7940 30 4 9 chr1 238073554 238074860 -4589493 + L1PA4 LINE L1 4854 6155 0 209 200 0 0 chr1 238074902 238074952 -4589401 + A-rich Low_complexity Low_complexity 1 50 0 2145 141 0 0 chr1 238074959 238075263 -4589090 + AluSx SINE Alu 1 304 -8 2423 87 0 10 chr1 238075343 238075652 -4588701 + AluY SINE Alu 1 306 -5 275 325 25 17 chr1 238075748 238075868 -4588485 - MLT1K LTR MaLR -22 566 446 28 0 0 0 chr1 238075989 238076017 -4588336 + AT_rich Low_complexity Low_complexity 1 28 0 2021 129 3 7 chr1 238076069 238076364 -4587989 + AluSx SINE Alu 1 294 -18 2044 111 10 16 chr1 238076367 238076674 -4587679 + AluY SINE Alu 2 306 -5 573 311 32 5 chr1 238076679 238076869 -4587484 + MIR SINE MIR 30 224 -38 524 280 47 62 chr1 238077975 238078186 -4586167 + MIR SINE MIR 21 228 -34 204 387 25 0 chr1 238078720 238078839 -4585514 + L3 LINE CR1 1234 1355 -222 277 255 153 10 chr1 238079168 238079267 -4585086 + MIR SINE MIR 38 149 -65 954 201 6 0 chr1 238079311 238079470 -4584883 + FRAM SINE Alu 1 160 -6 2251 107 10 3 chr1 238079473 238079781 -4584572 + AluSx SINE Alu 1 310 -2 2543 166 30 16 chr1 238079799 238080238 -4584115 - MER41D LTR ERV1 -112 445 1 1893 191 62 31 chr1 238080316 238080549 -4583804 + MLT1C LTR MaLR 5 229 -238 898 127 0 37 chr1 238080549 238080683 -4583670 + FLAM_C SINE Alu 2 130 -3 1893 191 62 31 chr1 238080683 238080898 -4583455 + MLT1C LTR MaLR 229 467 0 913 148 0 0 chr1 238083858 238083986 -4580367 + FLAM_C SINE Alu 3 130 -3 252 0 0 0 chr1 238086822 238086850 -4577503 + (A)n Simple_repeat Simple_repeat 1 28 0 272 79 0 0 chr1 238087051 238087089 -4577264 + tRNA-Leu-TTG tRNA tRNA 1 38 -48 227 250 21 42 chr1 238088893 238088989 -4575364 - MIR3 SINE MIR -2 206 113 2369 94 0 0 chr1 238090393 238090691 -4573662 - AluSx SINE Alu -14 298 1 1185 164 9 40 chr1 238090695 238090921 -4573432 - AluJo SINE Alu -7 305 87 945 144 52 0 chr1 238090920 238091073 -4573280 - FRAM SINE Alu -16 160 1 * 37 39 0 0 chr1 238091188 238091239 -4573114 + AT_rich Low_complexity Low_complexity 1 51 0 2266 123 0 0 chr1 238091539 238091847 -4572506 + AluSx SINE Alu 1 308 -4 269 250 35 2 chr1 238091942 238092054 -4572299 + L1M4 LINE L1 5228 5342 -808 776 102 110 0 chr1 238092057 238092175 -4572178 - AluSg/x SINE Alu -3 307 177 419 294 65 13 chr1 238092276 238092318 -4572035 - MER5B DNA MER1_type -14 164 126 2042 129 10 0 chr1 238092318 238092613 -4571740 + AluSx SINE Alu 1 298 -14 419 294 65 13 chr1 238092613 238092723 -4571630 - MER5B DNA MER1_type -52 126 4 195 42 0 0 chr1 238092777 238092801 -4571552 + (A)n Simple_repeat Simple_repeat 1 24 0 1709 189 17 0 chr1 238092955 238093251 -4571102 + AluJo SINE Alu 1 301 -11 253 164 27 27 chr1 238093310 238093383 -4570970 + (TA)n Simple_repeat Simple_repeat 1 73 0 258 341 11 0 chr1 238093427 238093518 -4570835 - MIR SINE MIR -74 188 97 433 310 122 36 chr1 238094061 238094364 -4569989 + L1MEd LINE L1 550 878 -5241 759 202 0 0 chr1 238094411 238094535 -4569818 - FLAM_C SINE Alu -19 124 1 554 299 83 51 chr1 238094536 238095111 -4569242 + L1MEd LINE L1 904 1537 -4773 2107 116 0 35 chr1 238095111 238095430 -4568923 + AluSx SINE Alu 1 308 -4 554 299 83 51 chr1 238095430 238095531 -4568822 + L1MEd LINE L1 1537 1633 -4677 216 135 0 0 chr1 238095595 238095632 -4568721 + (A)n Simple_repeat Simple_repeat 1 37 0 2024 88 30 0 chr1 238095632 238095928 -4568425 + AluSp SINE Alu 17 320 0 46 54 0 0 chr1 238096000 238096074 -4568279 + AT_rich Low_complexity Low_complexity 1 74 0 1992 149 0 10 chr1 238096273 238096574 -4567779 + AluJb SINE Alu 1 298 -14 24 0 0 0 chr1 238096645 238096669 -4567684 + AT_rich Low_complexity Low_complexity 1 24 0 1686 186 7 0 chr1 238096688 238096979 -4567374 + AluJb SINE Alu 2 294 -18 345 218 38 75 chr1 238096981 238097114 -4567239 + L1MEd LINE L1 2267 2394 -3735 1212 179 18 14 chr1 238097250 238097473 -4566880 - MER90 LTR ERV1 -23 552 329 2199 118 0 0 chr1 238097473 238097769 -4566584 - AluSg1 SINE Alu -13 296 1 1930 125 7 4 chr1 238097769 238098048 -4566305 - AluSx SINE Alu -8 304 24 1302 204 47 77 chr1 238098661 238099062 -4565291 + MLT2C1 LTR ERVL 1 389 -8 1218 267 55 33 chr1 238099069 238099436 -4564917 - MLT1I LTR MaLR -32 377 3 215 320 112 48 chr1 238100140 238100265 -4564088 - L2 LINE L2 -7 3265 3133 922 223 34 10 chr1 238100531 238100737 -4563616 + MER97a DNA MER1_type? 6 216 -678 2180 121 0 9 chr1 238100862 238101177 -4563176 + AluSx SINE Alu 1 312 0 341 368 48 0 chr1 238101190 238101315 -4563038 - L2 LINE L2 0 3272 3142 2166 115 0 20 chr1 238101555 238101859 -4562494 + AluSg SINE Alu 1 298 -12 1725 145 0 33 chr1 238102121 238102397 -4561956 + AluJo SINE Alu 1 267 -45 2494 100 14 12 chr1 238102534 238103059 -4561294 + L1P4 LINE L1 4976 5497 -671 1351 107 0 11 chr1 238103059 238103236 -4561117 - AluSq SINE Alu -138 175 1 186 43 0 0 chr1 238103451 238103474 -4560879 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 251 320 0 0 chr1 238103998 238104073 -4560280 + L2 LINE L2 3239 3313 0 863 185 12 6 chr1 238104972 238105134 -4559219 + FAM SINE Alu 8 170 -15 1156 90 20 13 chr1 238105265 238105453 -4558900 + L1P3 LINE L1 5375 5564 -591 22 0 0 0 chr1 238106248 238106270 -4558083 + AT_rich Low_complexity Low_complexity 1 22 0 2298 72 0 0 chr1 238106277 238106587 -4557766 + AluY SINE Alu 9 318 0 396 257 43 3 chr1 238106614 238106735 -4557618 + MIR SINE MIR 30 151 -61 808 160 0 0 chr1 238106902 238107021 -4557332 - FRAM SINE Alu -21 155 37 707 200 0 0 chr1 238107720 238107830 -4556523 + FAM SINE Alu 1 110 -75 692 321 41 21 chr1 238107830 238108021 -4556332 - MLT1F1 LTR MaLR -319 248 49 6279 151 98 30 chr1 238108021 238108326 -4556027 - HSMAR2 DNA Mariner -1 1301 1018 2163 95 14 10 chr1 238108326 238108620 -4555733 - AluY SINE Alu -16 295 1 6279 151 98 30 chr1 238108620 238109531 -4554822 - HSMAR2 DNA Mariner -284 1018 2 692 321 41 21 chr1 238109531 238109582 -4554771 - MLT1F1 LTR MaLR -518 49 1 2684 110 25 0 chr1 238109932 238110297 -4554056 + Charlie3 DNA MER1_type 2333 2706 -4 303 289 47 39 chr1 238110664 238110792 -4553561 + MIR SINE MIR 11 139 -123 6696 233 65 26 chr1 238111905 238113203 -4551150 + L1MB3 LINE L1 2900 4147 -2036 2056 141 20 0 chr1 238113203 238113507 -4550846 + AluSg SINE Alu 1 310 0 6696 233 65 26 chr1 238113507 238115372 -4548981 + L1MB3 LINE L1 4147 6182 -1 320 250 115 0 chr1 238115378 238115482 -4548871 - L1M LINE L1 -2427 5381 5266 33 43 0 0 chr1 238115504 238115551 -4548802 + AT_rich Low_complexity Low_complexity 1 47 0 239 84 72 12 chr1 238115571 238115654 -4548699 + (TA)n Simple_repeat Simple_repeat 2 89 0 821 168 52 0 chr1 238115801 238115956 -4548397 + L1MB3 LINE L1 6020 6182 -1 2418 82 0 0 chr1 238116566 238116869 -4547484 + AluY SINE Alu 1 303 -8 199 341 118 12 chr1 238117807 238117977 -4546376 - MIR SINE MIR -24 238 51 6745 56 49 5 chr1 238121587 238122604 -4541749 + L1PA7 LINE L1 5097 6154 0 207 114 0 0 chr1 238123296 238123331 -4541022 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 305 238 65 122 chr1 238123333 238123547 -4540806 + L1M2 LINE L1 873 1074 -5775 8912 302 37 21 chr1 238123702 238125302 -4539051 - PRIMA41-int LTR ERV1 -1593 6163 4590 2693 113 3 27 chr1 238125302 238125464 -4538889 + THE1B LTR MaLR 1 165 -199 2006 122 0 0 chr1 238125464 238125759 -4538594 - AluSx SINE Alu 0 317 23 2693 113 3 27 chr1 238125759 238125968 -4538385 + THE1B LTR MaLR 165 364 0 8912 302 37 21 chr1 238125968 238127535 -4536818 - PRIMA41-int LTR ERV1 -3166 4590 2945 259 163 0 0 chr1 238127540 238127583 -4536770 - MSTA LTR MaLR -385 43 1 4487 201 24 14 chr1 238127589 238128590 -4535763 - L1 LINE L1 -887 5259 4249 2148 183 56 15 chr1 238128590 238129001 -4535352 - MSTA LTR MaLR 0 428 1 322 190 0 0 chr1 238129001 238129059 -4535294 - MSTA-int LTR MaLR 0 1651 1594 28043 36 16 1 chr1 238129065 238133401 -4530952 + L1P LINE L1 4 4467 -1679 2255 92 3 0 chr1 238133516 238133825 -4530528 + AluSp SINE Alu 2 311 0 1238 247 40 3 chr1 238133825 238134129 -4530224 - MER90 LTR ERV1 -260 315 1 2044 139 3 7 chr1 238135473 238135776 -4528577 + AluSx SINE Alu 1 302 -10 402 207 12 12 chr1 238135793 238135875 -4528478 + AluJ/FLAM SINE Alu 11 92 -210 653 205 53 0 chr1 238135887 238136038 -4528315 - MER115 DNA AcHobo -71 622 464 702 225 110 13 chr1 238136137 238136364 -4527989 - MER115 DNA AcHobo -444 249 1 357 318 20 78 chr1 238136512 238136545 -4527808 + L2 LINE L2 2237 2270 -1044 2255 117 3 7 chr1 238136545 238136853 -4527500 - AluSx SINE Alu -4 308 2 357 318 20 78 chr1 238136853 238137115 -4527238 + L2 LINE L2 2270 2515 -799 2389 75 3 0 chr1 238137308 238137600 -4526753 - AluY SINE Alu -18 293 1 631 195 0 0 chr1 238138233 238138351 -4526002 - FLAM_C SINE Alu -15 118 1 2238 125 0 0 chr1 238138360 238138672 -4525681 - AluSx SINE Alu 0 312 1 399 347 0 20 chr1 238138800 238139051 -4525302 - L1MC/D LINE L1 -2211 5597 5352 2212 115 0 0 chr1 238139155 238139450 -4524903 - AluSx SINE Alu -17 295 1 1790 173 0 13 chr1 238139456 238139762 -4524591 - AluJo SINE Alu -10 302 1 406 225 7 72 chr1 238139885 238139958 -4524395 - MIR SINE MIR -24 238 177 1925 154 46 14 chr1 238139958 238140308 -4524045 - MLT1A1 LTR MaLR -2 363 3 406 225 7 72 chr1 238140308 238140372 -4523981 - MIR SINE MIR -85 177 110 2380 61 27 3 chr1 238140380 238140675 -4523678 - AluY SINE Alu -9 302 1 507 239 27 106 chr1 238140887 238140958 -4523395 - MER45A DNA AcHobo -1408 173 98 2122 118 0 3 chr1 238140958 238141247 -4523106 + AluSx SINE Alu 3 290 -22 2341 82 7 0 chr1 238141255 238141547 -4522806 + AluSq SINE Alu 1 294 -19 507 239 27 106 chr1 238141547 238141654 -4522699 - MER45A DNA AcHobo -1490 91 1 303 183 140 21 chr1 238141684 238141777 -4522576 - MIR SINE MIR -122 140 37 2055 105 0 59 chr1 238142139 238142445 -4521908 + AluSg SINE Alu 23 310 0 246 197 106 0 chr1 238143231 238143297 -4521056 + L1P LINE L1 4943 5015 -1131 521 290 99 26 chr1 238143597 238143890 -4520463 + L1ME LINE L1 5344 5660 -461 1974 140 7 0 chr1 238143911 238144211 -4520142 + AluJb SINE Alu 1 302 0 2719 146 7 18 chr1 238144338 238144776 -4519577 - Tigger2a DNA MER2_type -1 433 1 290 250 142 25 chr1 238144776 238144896 -4519457 - MIR SINE MIR -105 157 24 235 244 113 81 chr1 238144913 238145033 -4519320 + L1ME LINE L1 5702 5731 -435 2351 107 3 0 chr1 238145033 238145343 -4519010 + AluSp SINE Alu 1 311 -2 235 244 113 81 chr1 238145343 238145443 -4518910 + L1ME LINE L1 5731 5826 -340 23 54 0 0 chr1 238145485 238145522 -4518831 + AT_rich Low_complexity Low_complexity 1 37 0 2182 119 0 0 chr1 238145933 238146227 -4518126 - AluSx SINE Alu -18 294 1 2243 130 0 0 chr1 238146522 238146830 -4517523 + AluSx SINE Alu 1 308 -4 1227 102 6 0 chr1 238147024 238147191 -4517162 - AluSq SINE Alu -13 300 133 2472 87 3 0 chr1 238147401 238147711 -4516642 - AluSp SINE Alu -2 311 1 344 100 50 25 chr1 238147965 238148045 -4516308 + CT-rich Low_complexity Low_complexity 4 85 0 2223 119 0 0 chr1 238148051 238148354 -4515999 - AluSc SINE Alu -6 303 1 800 162 0 22 chr1 238148503 238148639 -4515714 + AluJo/FLAM SINE Alu 1 133 -179 1283 197 123 25 chr1 238148642 238148729 -4515624 + AluJb SINE Alu 1 78 -234 1735 147 8 4 chr1 238148729 238148987 -4515366 + AluSq SINE Alu 42 300 -13 1283 197 123 25 chr1 238148987 238149183 -4515170 + AluJb SINE Alu 78 312 0 2330 111 0 0 chr1 238149758 238150056 -4514297 + AluSx SINE Alu 1 298 -14 2372 88 3 3 chr1 238151012 238151319 -4513034 + AluSg SINE Alu 1 307 -3 336 269 59 8 chr1 238151906 238152025 -4512328 - L2 LINE L2 -2 3270 3146 26 50 0 0 chr1 238152029 238152069 -4512284 + AT_rich Low_complexity Low_complexity 1 40 0 2202 121 0 7 chr1 238152126 238152431 -4511922 + AluSx SINE Alu 1 303 -9 2140 104 13 23 chr1 238153198 238153507 -4510846 - AluSg SINE Alu -4 306 1 2156 123 3 0 chr1 238153508 238153801 -4510552 - AluSg1 SINE Alu -15 294 1 2540 149 14 30 chr1 238153833 238154223 -4510130 + MSTA LTR MaLR 1 385 -43 2467 83 0 0 chr1 238154223 238154524 -4509829 - AluSx SINE Alu -11 301 1 2540 149 14 30 chr1 238154524 238154568 -4509785 + MSTA LTR MaLR 385 428 0 706 289 81 14 chr1 238154601 238154947 -4509406 - L1MC4a LINE L1 -1916 5892 5524 2183 98 19 13 chr1 238155461 238155768 -4508585 + AluY SINE Alu 1 309 -2 1084 146 24 0 chr1 238155988 238156153 -4508200 - AluSp SINE Alu -11 302 134 2199 126 3 3 chr1 238156153 238156463 -4507890 - AluSx SINE Alu -2 310 1 1489 151 23 0 chr1 238156486 238156744 -4507609 - L1MC1 LINE L1 -1 6332 6069 456 188 39 26 chr1 238156748 238156902 -4507451 - L1ME4a LINE L1 -215 5906 5751 1917 113 3 14 chr1 238156910 238157193 -4507160 - AluSx SINE Alu -1 311 32 271 123 246 0 chr1 238157193 238157250 -4507103 - AluS SINE Alu -231 71 1 883 196 82 10 chr1 238157288 238157482 -4506871 + MER6B DNA MER2_type 3 210 0 762 300 46 60 chr1 238158230 238158890 -4505463 + L1MEd LINE L1 555 1207 -4912 2251 89 3 0 chr1 238158890 238159227 -4505126 - AluSp SINE Alu 0 338 1 762 300 46 60 chr1 238159227 238159278 -4505075 + L1MEd LINE L1 1207 1257 -4862 510 191 22 11 chr1 238159354 238159532 -4504821 + GA-rich Low_complexity Low_complexity 1 180 0 2070 108 0 0 chr1 238159554 238159823 -4504530 + AluSx SINE Alu 1 269 -43 261 83 0 0 chr1 238159827 238159863 -4504490 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 338 255 57 0 chr1 238159906 238160047 -4504306 + L1MEd LINE L1 1446 1594 -4535 2094 89 27 20 chr1 238160445 238160738 -4503615 - AluSg SINE Alu -15 295 1 421 126 35 11 chr1 238160825 238160912 -4503441 + LTR33A LTR ERVL 408 496 -27 2149 106 10 0 chr1 238161231 238161524 -4502829 - AluSx SINE Alu -16 296 1 2025 136 7 10 chr1 238162060 238162369 -4501984 - AluSq SINE Alu -5 308 1 916 79 0 0 chr1 238162369 238162483 -4501870 - MER57B LTR ERV1 -320 114 1 305 331 45 8 chr1 238162663 238162796 -4501557 + L2 LINE L2 2941 3078 -194 2013 136 7 7 chr1 238162879 238163180 -4501173 - AluSx SINE Alu -11 301 1 405 0 0 0 chr1 238163569 238163614 -4500739 + (TTA)n Simple_repeat Simple_repeat 1 45 0 473 113 0 0 chr1 238163638 238163709 -4500644 + Alu SINE Alu 235 305 -7 340 209 27 64 chr1 238163722 238163832 -4500521 + MLT1H LTR MaLR 184 289 -260 1879 33 0 9 chr1 238164123 238164337 -4500016 - AluY SINE Alu -99 212 1 32171 24 2 0 chr1 238165024 238169571 -4494782 + L1PA2 LINE L1 1603 6155 0 8043 205 33 5 chr1 238169586 238171149 -4493204 - MSTA-int LTR MaLR -44 1607 1 1585 214 92 27 chr1 238171149 238171195 -4493158 - MSTA LTR MaLR 0 428 386 2461 57 0 0 chr1 238171195 238171512 -4492841 - AluY SINE Alu 0 317 1 1585 214 92 27 chr1 238171512 238171866 -4492487 - MSTA LTR MaLR -42 386 1 3274 252 100 7 chr1 238171868 238173093 -4491260 - L1M4 LINE L1 -1895 4251 2914 399 241 73 44 chr1 238173211 238173348 -4491005 + MLT1B LTR MaLR 2 142 -248 337 241 0 0 chr1 238173349 238173432 -4490921 + MER5C DNA MER1_type 42 124 -200 1962 128 7 3 chr1 238173436 238173744 -4490609 + AluSg SINE Alu 1 309 0 2747 188 13 72 chr1 238173778 238174130 -4490223 + L1MC1 LINE L1 4753 5124 -1209 2359 99 0 0 chr1 238174130 238174433 -4489920 - AluSg SINE Alu -7 303 1 2747 188 13 72 chr1 238174433 238174661 -4489692 + L1MC1 LINE L1 5124 5364 -969 1745 130 65 14 chr1 238174661 238174938 -4489415 + AluSx SINE Alu 1 291 -21 2747 188 13 72 chr1 238174938 238175557 -4488796 + L1MC1 LINE L1 5364 5820 -513 2006 131 3 35 chr1 238175557 238175869 -4488484 - AluSx SINE Alu -10 302 1 2747 188 13 72 chr1 238175869 238176350 -4488003 + L1MC1 LINE L1 5820 6328 -5 366 252 130 8 chr1 238176470 238176541 -4487812 + MER5A DNA MER1_type 46 107 -82 2068 111 0 66 chr1 238176541 238176874 -4487479 + AluSx SINE Alu 1 311 -1 366 252 130 8 chr1 238176874 238176925 -4487428 + MER5A DNA MER1_type 107 183 -6 2198 90 0 4 chr1 238178033 238178310 -4486043 - AluSg SINE Alu -14 296 21 28 0 0 0 chr1 238178376 238178404 -4485949 + AT_rich Low_complexity Low_complexity 1 28 0 544 190 138 0 chr1 238178450 238178566 -4485787 + FLAM_C SINE Alu 1 132 -1 342 282 202 1 chr1 238178585 238178785 -4485568 - MIR SINE MIR -17 245 9 324 139 0 139 chr1 238179602 238179636 -4484717 - FAM SINE Alu -136 179 162 1908 155 20 0 chr1 238179636 238179909 -4484444 + AluSx SINE Alu 4 309 0 27 0 0 0 chr1 238179909 238179936 -4484417 + AT_rich Low_complexity Low_complexity 1 27 0 324 139 0 139 chr1 238179939 238179990 -4484363 - FAM SINE Alu -153 162 106 286 312 74 32 chr1 238180202 238180391 -4483962 + MIR SINE MIR 10 206 -56 193 40 0 0 chr1 238180607 238180632 -4483721 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1866 136 0 7 chr1 238180632 238180919 -4483434 - AluSp SINE Alu -1 309 1 734 158 0 50 chr1 238181029 238181168 -4483185 - FLAM_C SINE Alu -1 132 1 823 212 121 23 chr1 238181737 238182001 -4482352 + MLT1A2 LTR MaLR 4 293 -81 2024 133 3 3 chr1 238182069 238182369 -4481984 - AluSx SINE Alu -12 300 1 521 146 11 11 chr1 238182371 238182460 -4481893 + MLT1A2 LTR MaLR 286 374 0 412 305 181 45 chr1 238182710 238183424 -4480929 + L2 LINE L2 1604 2414 -900 2189 110 0 0 chr1 238183446 238183747 -4480606 + AluSx SINE Alu 1 301 -11 206 346 123 17 chr1 238183750 238183929 -4480424 + L2 LINE L2 2670 2867 -447 1324 227 54 35 chr1 238184063 238184433 -4479920 - MLT1C LTR MaLR 0 467 91 27 29 0 0 chr1 238184465 238184499 -4479854 + AT_rich Low_complexity Low_complexity 1 34 0 1714 149 3 43 chr1 238184499 238184821 -4479532 + AluJb SINE Alu 1 309 -3 245 222 148 12 chr1 238184831 238184912 -4479441 - MLT1C LTR MaLR -372 95 4 466 264 138 37 chr1 238184980 238185288 -4479065 - L1MC/D LINE L1 -743 5403 5152 738 119 0 126 chr1 238185288 238185439 -4478914 + FLAM_C SINE Alu 1 132 -1 2023 103 17 7 chr1 238185445 238185765 -4478588 + AluSq SINE Alu 1 313 0 692 198 0 0 chr1 238185924 238186040 -4478313 + FLAM_C SINE Alu 3 118 -15 31 0 0 0 chr1 238186040 238186071 -4478282 + AT_rich Low_complexity Low_complexity 1 31 0 859 195 12 0 chr1 238186160 238186329 -4478024 - AluSg/x SINE Alu -8 302 132 285 176 0 4 chr1 238186778 238186832 -4477521 + FAM SINE Alu 125 166 -9 2092 108 24 0 chr1 238186855 238187150 -4477203 - AluSx SINE Alu -9 303 2 239 241 30 139 chr1 238187156 238187250 -4477103 - L2 LINE L2 0 3313 3243 2065 104 7 7 chr1 238187250 238187547 -4476806 + AluSq SINE Alu 1 297 -16 239 241 30 139 chr1 238187547 238187618 -4476735 - L2 LINE L2 -70 3243 3166 287 250 173 0 chr1 238187880 238188036 -4476317 - L1MC/D LINE L1 -1877 4269 4087 253 306 14 0 chr1 238188038 238188110 -4476243 - L1MC/D LINE L1 -2019 4127 4055 753 182 57 68 chr1 238188113 238188289 -4476064 - FAM SINE Alu -1 174 1 1486 188 3 36 chr1 238188289 238188598 -4475755 - AluJb SINE Alu -13 299 1 2366 70 3 0 chr1 238188671 238188969 -4475384 - AluY SINE Alu -12 299 1 678 175 79 0 chr1 238189229 238189343 -4475010 - FLAM_A SINE Alu -10 123 1 841 160 0 0 chr1 238189367 238189498 -4474855 + FLAM_C SINE Alu 3 133 0 2338 62 7 10 chr1 238189604 238189912 -4474441 - AluY SINE Alu -4 307 1 1012 223 26 31 chr1 238189912 238190141 -4474212 - MLT1D LTR MaLR -165 340 113 2132 109 0 0 chr1 238190187 238190481 -4473872 - AluSg SINE Alu -16 294 1 759 142 17 0 chr1 238190489 238190609 -4473744 - FLAM_C SINE Alu -11 122 1 454 229 8 57 chr1 238190609 238190722 -4473631 - MLT1D LTR MaLR -511 115 7 243 0 0 0 chr1 238191015 238191042 -4473311 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 807 193 0 7 chr1 238191044 238191194 -4473159 - FRAM SINE Alu -30 146 1 180 279 0 33 chr1 238191606 238191667 -4472686 + L2 LINE L2 3254 3312 -1 2470 68 0 0 chr1 238191703 238192014 -4472339 - AluY SINE Alu 0 311 1 2253 98 0 13 chr1 238192057 238192374 -4471979 - AluSp SINE Alu 0 313 1 1114 173 9 31 chr1 238192378 238192604 -4471749 - AluJo SINE Alu -5 307 87 893 144 52 0 chr1 238192603 238192756 -4471597 - FRAM SINE Alu -16 160 1 * 37 39 0 0 chr1 238192871 238192922 -4471431 + AT_rich Low_complexity Low_complexity 1 51 0 1482 126 0 28 chr1 238193222 238193476 -4470877 + AluSx SINE Alu 1 247 -65 2019 110 7 10 chr1 238193701 238194000 -4470353 + AluSg SINE Alu 1 298 -12 1815 159 0 3 chr1 238194487 238194788 -4469565 + AluJo SINE Alu 1 300 -12 278 203 241 0 chr1 238195032 238195111 -4469242 + L2 LINE L2 3208 3305 -8 1817 293 115 34 chr1 238195183 238196162 -4468191 - ERVL LTR ERVL -1325 4439 3381 1444 175 24 4 chr1 238196280 238196607 -4467746 - L1MB3 LINE L1 -66 6117 5715 2331 84 0 0 chr1 238196621 238196918 -4467435 - AluSq SINE Alu -16 297 1 38 22 0 0 chr1 238196973 238197018 -4467335 + AT_rich Low_complexity Low_complexity 1 45 0 1192 133 33 0 chr1 238197102 238197312 -4467041 + AluJb SINE Alu 85 301 -11 1569 167 0 15 chr1 238197341 238197610 -4466743 + AluJo SINE Alu 1 265 -47 279 79 0 0 chr1 238197789 238197827 -4466526 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 1142 150 5 47 chr1 238197840 238198053 -4466300 - AluJb SINE Alu -22 290 87 2194 87 0 19 chr1 238198079 238198391 -4465962 - AluY SINE Alu -5 306 1 213 39 0 0 chr1 238198439 238198465 -4465888 + (A)n Simple_repeat Simple_repeat 1 26 0 663 106 11 0 chr1 238198691 238198785 -4465568 + LTR47A LTR ERVL 1 95 -357 993 147 49 64 chr1 238198837 238198960 -4465393 + LTR47A LTR ERVL 252 372 -80 2550 33 0 0 chr1 238198960 238199260 -4465093 - AluY SINE Alu -11 300 1 993 147 49 64 chr1 238199260 238199340 -4465013 + LTR47A LTR ERVL 372 452 0 1898 70 19 4 chr1 238199738 238199996 -4464357 - AluY SINE Alu -49 262 1 2199 109 0 6 chr1 238200030 238200341 -4464012 + AluSg SINE Alu 1 309 -1 515 311 131 29 chr1 238200488 238200832 -4463521 - L2 LINE L2 0 3313 2935 1892 102 0 4 chr1 238201595 238201860 -4462493 - AluSx SINE Alu -7 305 42 3595 165 106 60 chr1 238202091 238202263 -4462090 - MER21B LTR ERV1 -75 788 625 1801 141 41 0 chr1 238202263 238202553 -4461800 - AluSg SINE Alu -8 302 1 3595 165 106 60 chr1 238202553 238203021 -4461332 - MER21B LTR ERV1 -238 625 180 2094 121 0 3 chr1 238203021 238203326 -4461027 + AluSx SINE Alu 2 305 -7 3595 165 106 60 chr1 238203326 238203360 -4460993 - MER21B LTR ERV1 -683 180 149 1966 145 0 3 chr1 238203360 238203670 -4460683 + AluSx SINE Alu 3 311 -1 3595 165 106 60 chr1 238203670 238203746 -4460607 - MER21B LTR ERV1 -714 149 1 356 343 81 35 chr1 238204338 238204536 -4459817 + MIR SINE MIR 23 229 -33 2241 71 6 43 chr1 238204928 238205251 -4459102 - AluSp SINE Alu -2 311 1 865 149 0 0 chr1 238205514 238205655 -4458698 - AluJb SINE Alu -2 310 170 1291 133 0 19 chr1 238205852 238206063 -4458290 - AluSx SINE Alu -105 207 1 802 172 0 0 chr1 238206501 238206629 -4457724 - AluJb SINE Alu -7 305 178 797 71 0 0 chr1 238207846 238207945 -4456408 - AluSg/x SINE Alu -23 289 191 299 255 45 77 chr1 238208168 238208298 -4456055 - MIR SINE MIR -65 143 30 1631 170 13 16 chr1 238208471 238208783 -4455570 + AluJo SINE Alu 1 311 -1 22 70 0 0 chr1 238209487 238209530 -4454823 + AT_rich Low_complexity Low_complexity 1 43 0 259 167 0 21 chr1 238209535 238209583 -4454770 - MLT1I LTR MaLR -2 407 361 1689 181 24 0 chr1 238209584 238209882 -4454471 + AluJo SINE Alu 2 306 -6 803 240 38 76 chr1 238210297 238210565 -4453788 + MIR SINE MIR 6 262 0 1893 130 24 0 chr1 238211190 238211482 -4452871 + AluSx SINE Alu 1 299 -13 2186 108 3 3 chr1 238212179 238212486 -4451867 - AluSq SINE Alu -4 309 3 384 310 39 19 chr1 238212500 238212655 -4451698 - MLT1I LTR MaLR -191 218 61 1349 180 8 19 chr1 238212657 238212913 -4451440 + AluJo SINE Alu 5 257 -55 29 0 0 0 chr1 238213138 238213167 -4451186 + AT_rich Low_complexity Low_complexity 1 29 0 2186 102 0 9 chr1 238213176 238213491 -4450862 + AluSx SINE Alu 1 312 0 325 268 49 12 chr1 238213615 238213697 -4450656 - L2 LINE L2 0 3272 3188 393 197 0 0 chr1 238213729 238213790 -4450563 + MER58A DNA MER1_type 1 61 -163 594 172 17 17 chr1 238213792 238213908 -4450445 + MER58B DNA MER1_type 225 340 -1 283 136 0 23 chr1 238213977 238214021 -4450332 + AluSx SINE Alu 1 43 -260 1829 129 0 7 chr1 238214021 238214308 -4450045 + AluSx SINE Alu 27 311 -1 1988 99 49 3 chr1 238214372 238214656 -4449697 + AluSq SINE Alu 1 297 -16 960 115 0 0 chr1 238214757 238214887 -4449466 - AluSq/x SINE Alu -182 130 1 2104 101 20 0 chr1 238215151 238215449 -4448904 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr1 238215901 238215923 -4448430 + AT_rich Low_complexity Low_complexity 1 22 0 2418 51 3 0 chr1 238216133 238216428 -4447925 - AluY SINE Alu -9 302 7 845 143 6 54 chr1 238216533 238216701 -4447652 - FRAM SINE Alu -6 170 11 1331 93 0 0 chr1 238216830 238217012 -4447341 + AluSp SINE Alu 129 310 -3 1528 106 35 35 chr1 238217014 238217268 -4447085 + L1PA8A LINE L1 5878 6131 0 284 205 107 66 chr1 238217884 238218006 -4446347 + MLT1H LTR MaLR 421 547 -2 728 111 0 0 chr1 238218368 238218467 -4445886 - AluY SINE Alu -218 100 2 1910 126 14 0 chr1 238218503 238218780 -4445573 + AluSx SINE Alu 1 281 -31 840 140 0 21 chr1 238219759 238219902 -4444451 + FLAM_C SINE Alu 3 142 -1 2217 55 10 7 chr1 238220131 238220423 -4443930 + AluY SINE Alu 1 293 -18 471 340 20 67 chr1 238220571 238220878 -4443475 - L2 LINE L2 -753 2561 2270 2075 126 7 0 chr1 238220878 238221187 -4443166 + AluSx SINE Alu 2 312 0 471 340 20 67 chr1 238221187 238221220 -4443133 - L2 LINE L2 -1044 2270 2237 730 225 110 13 chr1 238221368 238221595 -4442758 + MER115 DNA AcHobo 1 249 -444 646 205 53 0 chr1 238221694 238221845 -4442508 + MER115 DNA AcHobo 464 622 -71 407 228 23 49 chr1 238221857 238221956 -4442397 - AluJ/FLAM SINE Alu -210 92 80 1925 139 3 7 chr1 238221956 238222259 -4442094 - AluSx SINE Alu -10 302 1 407 228 23 49 chr1 238222259 238222328 -4442025 - AluJ/FLAM SINE Alu -222 80 11 2032 75 48 3 chr1 238223863 238224155 -4440198 - AluY SINE Alu -6 305 1 183 286 0 0 chr1 238224251 238224293 -4440060 - L2 LINE L2 -1049 2265 2224 211 344 11 21 chr1 238224299 238224392 -4439961 + MIR SINE MIR 170 261 -1 1610 146 0 12 chr1 238224714 238224968 -4439385 + AluSx SINE Alu 1 251 -61 1904 105 57 27 chr1 238225216 238225512 -4438841 + AluSx SINE Alu 1 305 -7 580 0 40 0 chr1 238225973 238226048 -4438305 + (TTTTA)n Simple_repeat Simple_repeat 2 79 0 1933 122 6 16 chr1 238226091 238226403 -4437950 - AluSg1 SINE Alu 0 309 1 1343 117 10 0 chr1 238226403 238226600 -4437753 - AluSg/x SINE Alu -7 303 105 1526 107 30 17 chr1 238226876 238227110 -4437243 - AluSx SINE Alu -12 300 64 445 150 60 0 chr1 238227113 238227200 -4437153 - MSTB LTR MaLR -346 80 1 1940 165 77 34 chr1 238227205 238227329 -4437024 + MER90 LTR ERV1 179 296 -318 2506 51 0 13 chr1 238227329 238227644 -4436709 - AluY SINE Alu 0 311 1 2200 105 0 3 chr1 238227645 238227951 -4436402 - AluSq SINE Alu -8 305 1 1940 165 77 34 chr1 238227951 238228242 -4436111 + MER90 LTR ERV1 295 614 0 1755 155 10 3 chr1 238228249 238228545 -4435808 - AluJo SINE Alu -14 298 1 2145 92 0 0 chr1 238228917 238229225 -4435128 + AluSx SINE Alu 1 308 0 216 237 0 0 chr1 238230106 238230144 -4434209 + polypyrimidine Low_complexity Low_complexity 2 39 0 2221 129 3 6 chr1 238230144 238230455 -4433898 - AluSx SINE Alu -2 310 1 1108 228 14 0 chr1 238230525 238230744 -4433609 - MER58A DNA MER1_type 0 224 3 2108 85 0 7 chr1 238231223 238231495 -4432858 + AluSg SINE Alu 39 308 -2 981 202 18 72 chr1 238231794 238231932 -4432421 + MLT1G LTR MaLR 263 380 -210 2417 78 10 0 chr1 238231932 238232228 -4432125 - AluY SINE Alu -8 303 5 981 202 18 72 chr1 238232228 238232366 -4431987 + MLT1G LTR MaLR 380 524 -66 1938 149 0 17 chr1 238232755 238233069 -4431284 + AluSx SINE Alu 1 309 0 515 289 205 15 chr1 238233165 238233560 -4430793 + L2 LINE L2 2844 3313 0 1850 160 17 3 chr1 238233702 238233990 -4430363 - AluJo SINE Alu -20 292 1 266 244 35 35 chr1 238234193 238234279 -4430074 + MIR SINE MIR 76 161 -101 1975 142 3 10 chr1 238234482 238234778 -4429575 + AluJb SINE Alu 7 300 -12 2228 124 3 3 chr1 238235610 238235916 -4428437 - AluSx SINE Alu -6 306 1 1826 314 35 34 chr1 238236073 238236380 -4427973 - MERVL LTR ERVL -1903 3093 2788 2466 100 3 0 chr1 238236380 238236689 -4427664 + AluSx SINE Alu 1 310 -2 1826 314 35 34 chr1 238236689 238237227 -4427126 - MERVL LTR ERVL -2208 2788 2415 2228 114 0 3 chr1 238237296 238237593 -4426760 - AluSx SINE Alu -16 296 1 752 328 102 15 chr1 238237825 238238237 -4426116 - MERVL LTR ERVL -4189 807 360 314 287 43 9 chr1 238238227 238238342 -4426011 - MERVL LTR ERVL -2658 2827 2709 * 2282 125 0 0 chr1 238238369 238238673 -4425680 + AluSx SINE Alu 1 304 -8 246 257 81 14 chr1 238239056 238239130 -4425223 - MIR SINE MIR -73 135 57 2432 97 0 0 chr1 238239204 238239514 -4424839 - AluSx SINE Alu -2 310 1 1165 171 43 0 chr1 238240392 238240603 -4423750 - AluJo SINE Alu -92 220 1 533 173 9 14 chr1 238240614 238240725 -4423628 - MLT1D LTR MaLR -417 88 1 2472 85 0 13 chr1 238240927 238241243 -4423110 - AluSp SINE Alu -1 312 1 3911 100 14 19 chr1 238241246 238241629 -4422724 - L1PA14 LINE L1 0 6161 5781 2340 105 3 3 chr1 238241629 238241935 -4422418 - AluSp SINE Alu -7 306 1 3911 100 14 19 chr1 238241935 238242130 -4422223 - L1PA14 LINE L1 -380 5781 5586 721 73 10 0 chr1 238242130 238242226 -4422127 - U6 snRNA snRNA -10 97 1 1823 163 10 29 chr1 238242235 238242541 -4421812 - AluJo SINE Alu -12 300 1 21 36 0 0 chr1 238242541 238242569 -4421784 + AT_rich Low_complexity Low_complexity 1 28 0 388 288 50 86 chr1 238242702 238242796 -4421557 + MIR SINE MIR 30 126 -136 2278 114 0 3 chr1 238242796 238243102 -4421251 - AluY SINE Alu -6 305 1 388 288 50 86 chr1 238243102 238243229 -4421124 + MIR SINE MIR 126 243 -19 2148 89 4 11 chr1 238243270 238243550 -4420803 - AluSp SINE Alu -11 302 25 2281 103 3 3 chr1 238244380 238244682 -4419671 + AluSg SINE Alu 5 306 -4 1310 171 122 8 chr1 238244878 238245141 -4419212 - AluJo SINE Alu -19 293 1 348 306 101 0 chr1 238245203 238245422 -4418931 - L1ME LINE L1 -340 5781 5541 885 157 0 0 chr1 238245640 238245774 -4418579 - AluJb SINE Alu -178 134 1 299 366 38 27 chr1 238245775 238245961 -4418392 - MIR SINE MIR -65 197 10 2393 86 17 0 chr1 238247329 238247630 -4416723 + AluSq SINE Alu 3 308 -5 1126 158 0 11 chr1 238248141 238248325 -4416028 - AluJo SINE Alu -43 269 88 1471 107 5 5 chr1 238248449 238248646 -4415707 + AluSx SINE Alu 1 197 -115 2179 102 38 0 chr1 238248713 238249006 -4415347 - AluSc SINE Alu -5 304 1 2340 108 0 0 chr1 238249715 238250010 -4414343 - AluSx SINE Alu -17 295 1 2211 105 3 43 chr1 238250808 238251133 -4413220 - AluSx SINE Alu 0 312 1 225 285 84 104 chr1 238251211 238251339 -4413014 - L2 LINE L2 -1201 2113 1984 1876 181 0 13 chr1 238251339 238251654 -4412699 + AluJo SINE Alu 1 311 -1 876 102 8 24 chr1 238251656 238251783 -4412570 + FLAM_C SINE Alu 1 125 -8 225 285 84 104 chr1 238251783 238251998 -4412355 - L2 LINE L2 -1331 1983 1774 184 349 55 20 chr1 238252060 238252206 -4412147 - MIR SINE MIR -6 256 106 1934 148 3 0 chr1 238252213 238252504 -4411849 - AluSx SINE Alu 0 312 21 1085 122 7 0 chr1 238252505 238252653 -4411700 - AluSq SINE Alu -159 154 6 276 193 0 18 chr1 238252659 238252716 -4411637 - FLAM SINE Alu -2 131 76 212 77 26 0 chr1 238252973 238253012 -4411341 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2403 57 0 3 chr1 238253019 238253301 -4411052 - AluY SINE Alu -30 281 1 541 160 53 46 chr1 238253359 238253490 -4410863 - FLAM_C SINE Alu 0 133 2 2055 125 12 41 chr1 238253496 238253816 -4410537 - AluSx SINE Alu -1 311 1 2156 114 3 3 chr1 238253875 238254173 -4410180 + AluSx SINE Alu 1 298 -14 1034 173 56 33 chr1 238254257 238254471 -4409882 - MER20 DNA MER1_type 0 219 1 423 200 223 31 chr1 238254495 238254625 -4409728 + MER5A DNA MER1_type 14 168 -21 199 36 0 36 chr1 238254659 238254687 -4409666 + MER5B DNA MER1_type 21 47 -131 264 300 77 8 chr1 238254877 238255007 -4409346 + MIR SINE MIR 1 139 -123 2131 112 7 0 chr1 238255358 238255645 -4408708 - AluSx SINE Alu -23 289 1 1233 145 102 132 chr1 238255906 238256051 -4408302 + AluSx SINE Alu 3 136 -166 2353 93 3 0 chr1 238256051 238256342 -4408011 + AluSp SINE Alu 1 292 -21 1233 145 102 132 chr1 238256342 238256499 -4407854 + AluSx SINE Alu 136 296 -6 22 0 0 0 chr1 238256499 238256521 -4407832 + AT_rich Low_complexity Low_complexity 1 22 0 2229 119 0 0 chr1 238257018 238257312 -4407041 + AluSx SINE Alu 1 294 -18 781 153 0 8 chr1 238257315 238257433 -4406920 - AluJo/FLAM SINE Alu -185 117 1 200 341 24 0 chr1 238257450 238257532 -4406821 - MIR SINE MIR -105 157 74 397 136 36 118 chr1 238257565 238257675 -4406678 + MER53 DNA DNA 89 189 0 2068 141 3 7 chr1 238257761 238258092 -4406261 + AluSx SINE Alu 2 312 0 2259 129 0 0 chr1 238258164 238258473 -4405880 + AluSx SINE Alu 1 309 -3 298 264 27 27 chr1 238258842 238258952 -4405401 + L1MC4 LINE L1 7933 8042 0 249 262 28 75 chr1 238258987 238259040 -4405313 + L2 LINE L2 3202 3249 -64 4362 73 5 2 chr1 238259040 238259591 -4404762 - MER41A LTR ERV1 0 554 2 249 262 28 75 chr1 238259591 238259644 -4404709 + L2 LINE L2 3249 3303 -10 301 324 102 23 chr1 238259786 238260002 -4404351 - L2 LINE L2 -1 3312 3080 245 268 0 14 chr1 238260110 238260181 -4404172 - L1MA9 LINE L1 -38 6274 6205 1763 129 47 149 chr1 238260182 238260437 -4403916 - L1MA9 LINE L1 -176 6136 5965 2170 108 17 0 chr1 238260437 238260725 -4403628 - AluSc SINE Alu -16 293 1 1763 129 47 149 chr1 238260725 238261018 -4403335 - L1MA9 LINE L1 -347 5965 5644 2294 117 0 0 chr1 238261020 238261320 -4403033 - AluSq SINE Alu -7 306 7 2178 129 0 0 chr1 238261335 238261629 -4402724 - AluSg SINE Alu -16 294 1 361 318 30 23 chr1 238261629 238261755 -4402598 - MIR SINE MIR -100 162 36 792 271 75 87 chr1 238261776 238262107 -4402246 + MER34 LTR ERV1 1 325 -217 1588 175 3 80 chr1 238262107 238262321 -4402032 - AluJo SINE Alu -9 303 121 2148 101 14 7 chr1 238262321 238262607 -4401746 + AluSg SINE Alu 1 288 -22 1588 175 3 80 chr1 238262607 238262718 -4401635 - AluJo SINE Alu -191 121 3 792 271 75 87 chr1 238262718 238262929 -4401424 + MER34 LTR ERV1 325 537 -5 1142 156 0 0 chr1 238263097 238263276 -4401077 - AluSg/x SINE Alu -13 299 121 2219 87 4 0 chr1 238263309 238263586 -4400767 + AluSp SINE Alu 1 278 -35 2027 143 7 3 chr1 238264061 238264368 -4399985 + AluSx SINE Alu 1 308 -4 237 218 18 36 chr1 238264375 238264430 -4399923 + MER5A DNA MER1_type 24 77 -112 1616 171 18 24 chr1 238264511 238264839 -4399514 - MER1B DNA MER1_type -8 331 6 238 211 66 66 chr1 238264845 238264921 -4399432 + MER5A DNA MER1_type 86 161 -28 224 235 0 20 chr1 238264951 238265002 -4399351 + MER5A DNA MER1_type 140 189 0 1243 230 83 0 chr1 238265010 238265323 -4399030 + MER58B DNA MER1_type 3 341 0 803 154 0 31 chr1 238265744 238265874 -4398479 - FLAM_C SINE Alu -7 126 1 792 196 0 0 chr1 238266134 238266267 -4398086 + FLAM_C SINE Alu 1 133 0 2219 125 0 0 chr1 238266303 238266607 -4397746 - AluSx SINE Alu -8 304 1 2285 114 3 3 chr1 238266749 238267057 -4397296 + AluSq SINE Alu 1 308 -5 2104 137 0 25 chr1 238267080 238267395 -4396958 + AluSx SINE Alu 1 307 -5 2066 95 7 34 chr1 238267531 238267827 -4396526 + AluSg1 SINE Alu 1 288 -21 432 253 0 0 chr1 238268127 238268206 -4396147 - FRAM/FAM SINE Alu -102 74 1 1767 147 8 4 chr1 238268221 238268479 -4395874 - AluSq SINE Alu -13 300 42 1103 196 0 40 chr1 238268480 238268705 -4395648 - AluJo SINE Alu -96 216 1 2266 121 0 0 chr1 238268854 238269159 -4395194 + AluSg SINE Alu 1 305 -5 194 302 188 7 chr1 238269234 238269383 -4394970 - L2 LINE L2 -456 2858 2683 1117 152 0 11 chr1 238269385 238269563 -4394790 - AluJ SINE Alu -8 304 129 2344 91 7 7 chr1 238269578 238269876 -4394477 + AluSx SINE Alu 1 298 -14 1251 116 0 0 chr1 238269876 238270040 -4394313 + AluSq SINE Alu 134 297 -16 609 130 10 10 chr1 238270057 238270157 -4394196 - AluJ SINE Alu -186 126 27 2323 106 0 25 chr1 238270710 238271030 -4393323 + AluSx SINE Alu 1 312 0 2187 93 0 7 chr1 238271030 238271308 -4393045 + AluSx SINE Alu 1 276 -36 245 210 143 59 chr1 238272640 238272759 -4391594 + L2 LINE L2 2622 2750 -564 182 341 23 11 chr1 238272839 238272927 -4391426 + L2 LINE L2 2651 2739 -575 1400 188 48 0 chr1 238272973 238273245 -4391108 + AluJo SINE Alu 1 285 -27 528 16 0 0 chr1 238273275 238273336 -4391017 + (CA)n Simple_repeat Simple_repeat 2 62 0 2302 115 0 0 chr1 238273360 238273656 -4390697 + AluSx SINE Alu 1 296 -16 297 291 95 34 chr1 238273699 238273878 -4390475 + L2 LINE L2 2826 3015 -257 1844 155 10 7 chr1 238274148 238274444 -4389909 - AluSx SINE Alu -15 297 1 2032 143 10 3 chr1 238274469 238274776 -4389577 - AluSx SINE Alu -3 309 1 290 79 0 0 chr1 238275257 238275295 -4389058 - 5S rRNA rRNA -83 38 1 2127 102 14 0 chr1 238275327 238275610 -4388743 - AluSq SINE Alu -17 296 10 2045 118 66 0 chr1 238275879 238276167 -4388186 + AluSx SINE Alu 1 307 -5 217 141 172 16 chr1 238276171 238276235 -4388118 + MER5C DNA MER1_type 111 184 -140 650 204 68 23 chr1 238276240 238276416 -4387937 - MER58B DNA MER1_type -3 338 155 948 152 34 17 chr1 238276416 238276594 -4387759 - AluJo SINE Alu -12 300 120 274 276 95 0 chr1 238276594 238276710 -4387643 - MER58B DNA MER1_type -202 139 13 233 286 0 0 chr1 238276861 238276917 -4387436 + L2 LINE L2 3013 3068 -245 386 248 124 40 chr1 238276919 238277023 -4387330 + L1MC5 LINE L1 7612 7706 -255 804 178 0 0 chr1 238277023 238277141 -4387212 - AluJo SINE Alu -184 118 1 386 248 124 40 chr1 238277141 238277310 -4387043 + L1MC5 LINE L1 7706 7908 -53 982 133 90 37 chr1 238277311 238277531 -4386822 + AluJo SINE Alu 114 343 0 1392 157 164 4 chr1 238277574 238277836 -4386517 - AluSx SINE Alu -8 304 1 1542 118 0 5 chr1 238277993 238278232 -4386121 + AluSg/x SINE Alu 83 312 0 2157 123 7 0 chr1 238278410 238278712 -4385641 + AluSx SINE Alu 1 304 -8 240 162 0 0 chr1 238278726 238278763 -4385590 - LTR24C LTR ERV1 -81 554 518 2084 123 0 16 chr1 238278789 238278926 -4385427 + AluSq SINE Alu 1 139 -174 2245 132 0 0 chr1 238278926 238279229 -4385124 + AluSg SINE Alu 1 303 -7 2084 123 0 16 chr1 238279229 238279401 -4384952 + AluSq SINE Alu 139 305 -8 271 201 0 18 chr1 238479556 238479618 -4184735 - MLT1G1 LTR MaLR -7 588 523 2258 95 0 0 chr1 238479621 238479925 -4184428 + AluY SINE Alu 1 304 -7 1233 150 20 112 chr1 238480192 238480238 -4184115 + LTR49-int LTR ERV1 1558 1607 -4724 1950 123 3 10 chr1 238480238 238480538 -4183815 - AluJo SINE Alu -6 306 9 1233 150 20 112 chr1 238480538 238480838 -4183515 + LTR49-int LTR ERV1 1607 1872 -4459 2133 125 6 10 chr1 238480838 238481151 -4183202 + LTR8 LTR ERV1 1 312 -379 547 108 11 43 chr1 238481277 238481370 -4182983 + Tigger1 DNA MER2_type 1748 1837 -581 2121 113 3 0 chr1 238482332 238482643 -4181710 + AluSx SINE Alu 1 312 0 2532 40 0 0 chr1 238482696 238482998 -4181355 + AluY SINE Alu 1 302 -9 471 262 94 27 chr1 238483213 238483362 -4180991 + HERVL LTR ERVL 4060 4218 -1436 3033 188 11 7 chr1 238483365 238483907 -4180446 - MER44D DNA MER2_type 0 605 7 569 222 84 12 chr1 238483914 238484081 -4180272 + Tigger1 DNA MER2_type 1 179 -2239 963 168 19 0 chr1 238484081 238484236 -4180117 - AluJo SINE Alu -7 295 138 542 176 0 0 chr1 238484254 238484345 -4180008 - AluJo SINE Alu -188 124 34 7065 124 32 12 chr1 238484349 238485158 -4179195 + Tigger1 DNA MER2_type 181 1019 -1399 2119 119 7 0 chr1 238485158 238485461 -4178892 - AluSq SINE Alu -8 305 1 7065 124 32 12 chr1 238485461 238485745 -4178608 + Tigger1 DNA MER2_type 1019 1296 -1122 35 41 0 0 chr1 238485884 238485933 -4178420 + GC_rich Low_complexity Low_complexity 1 49 0 535 122 89 0 chr1 238486352 238486442 -4177911 - AluJ/FLAM SINE Alu -210 102 5 2231 101 0 3 chr1 238487090 238487397 -4176956 + AluSx SINE Alu 1 306 -6 554 126 6 169 chr1 238487397 238487496 -4176857 + LTR49-int LTR ERV1 4191 4248 -3872 1516 158 3 41 chr1 238487496 238487787 -4176566 + AluJo SINE Alu 10 289 -23 554 126 6 169 chr1 238487787 238487870 -4176483 + LTR49-int LTR ERV1 4248 4343 -3777 2033 114 10 10 chr1 238487879 238488187 -4176166 + AluSx SINE Alu 1 308 -4 2077 100 3 3 chr1 238488205 238488496 -4175857 + AluSx SINE Alu 1 291 -21 519 140 9 47 chr1 238488509 238488616 -4175737 + LTR49-int LTR ERV1 4349 4451 -3669 779 135 8 0 chr1 238488681 238488807 -4175546 - L1PB1 LINE L1 0 6151 6025 420 184 11 0 chr1 238488840 238488927 -4175426 - L1PB1 LINE L1 -81 6070 5983 742 147 0 16 chr1 238488927 238489056 -4175297 + LTR49-int LTR ERV1 3978 4104 -2227 1281 120 0 16 chr1 238489058 238489249 -4175104 - AluSg/x SINE Alu -55 255 68 2382 60 0 3 chr1 238489732 238490030 -4174323 + AluY SINE Alu 1 297 -14 1564 209 17 0 chr1 238490040 238490341 -4174012 + AluJb SINE Alu 1 306 -6 2148 97 0 23 chr1 238490382 238490690 -4173663 + AluSx SINE Alu 1 301 -11 330 246 42 92 chr1 238490810 238490952 -4173401 + MLT1L LTR MaLR 18 152 -463 601 234 76 6 chr1 238490971 238491142 -4173211 + MER58A DNA MER1_type 42 224 0 429 192 0 0 chr1 238491175 238491248 -4173105 - AluSg/x SINE Alu -28 282 210 595 93 0 0 chr1 238491348 238491423 -4172930 - AluSg/x SINE Alu -152 158 84 286 150 33 50 chr1 238491505 238491565 -4172788 - HERVL LTR ERVL -881 4773 4715 728 262 100 39 chr1 238491821 238491863 -4172490 - HERVL LTR ERVL -1173 4591 4553 1968 107 0 18 chr1 238491863 238492194 -4172159 - AluSx SINE Alu 0 334 9 728 262 100 39 chr1 238492194 238492467 -4171886 - HERVL LTR ERVL -1211 4553 4221 2974 128 57 24 chr1 238492468 238492791 -4171562 - Tigger1 DNA MER2_type 0 2418 2072 2301 58 0 48 chr1 238492791 238493100 -4171253 - AluY SINE Alu -17 294 1 2974 128 57 24 chr1 238493100 238493267 -4171086 - Tigger1 DNA MER2_type -346 2072 1912 603 291 13 7 chr1 238493372 238493523 -4170830 + MIR SINE MIR 107 258 -4 1576 172 21 7 chr1 238493767 238494052 -4170301 + AluJb SINE Alu 2 290 -22 256 276 79 0 chr1 238494892 238494968 -4169385 - L2 LINE L2 -32 3240 3159 578 247 116 0 chr1 238495446 238495592 -4168761 + MIR SINE MIR 33 195 -67 3025 69 11 0 chr1 238495596 238495973 -4168380 + THE1A-int LTR MaLR 1200 1580 0 1773 81 0 0 chr1 238495973 238496196 -4168157 + THE1A LTR MaLR 1 223 -132 6889 221 121 31 chr1 238496355 238497908 -4166445 + HERVL68 LTR ERVL 346 2123 -914 2034 114 7 0 chr1 238497908 238498215 -4166138 + AluSc SINE Alu 1 309 0 6889 221 121 31 chr1 238498215 238498674 -4165679 + HERVL68 LTR ERVL 2123 2539 -498 753 195 23 58 chr1 238498692 238498866 -4165487 + MER68 LTR ERV1 395 562 0 686 221 147 47 chr1 238498995 238499253 -4165100 - L1MC4 LINE L1 -1054 6988 6705 322 321 86 66 chr1 238499264 238499566 -4164787 - L1MC4a LINE L1 -1224 6584 6277 949 138 69 23 chr1 238499576 238499750 -4164603 + MLT1-int LTR MaLR 430 611 -760 1622 104 0 0 chr1 238499904 238500116 -4164237 - AluSq SINE Alu -101 212 1 3216 136 21 72 chr1 238500126 238500708 -4163645 + LTR8 LTR ERV1 140 691 0 3949 95 30 11 chr1 238500771 238501329 -4163024 - MER61E LTR ERV1 0 569 1 1290 78 10 44 chr1 238501383 238501542 -4162811 - LTR23 LTR ERV1 0 437 285 1767 151 10 10 chr1 238501542 238501846 -4162507 + AluSx SINE Alu 1 304 -8 1290 78 10 44 chr1 238501846 238501892 -4162461 - LTR23 LTR ERV1 -152 285 239 1780 94 19 41 chr1 238501897 238502164 -4162189 + AluSq SINE Alu 1 261 -52 2525 52 0 0 chr1 238502364 238502672 -4161681 + AluY SINE Alu 1 308 -3 1229 173 198 0 chr1 238503091 238503339 -4161014 + AluJo SINE Alu 1 297 -5 181 242 48 16 chr1 238503502 238503564 -4160789 - L2 LINE L2 -1604 1710 1647 325 300 60 84 chr1 238503564 238503814 -4160539 - L1M4 LINE L1 -1222 4924 4681 349 316 101 7 chr1 238503845 238503984 -4160369 - MIR SINE MIR -108 154 3 203 298 83 41 chr1 238504032 238504153 -4160200 + L2 LINE L2 210 335 -2979 1788 161 88 6 chr1 238504153 238504482 -4159871 + MLT2D LTR ERVL 1 356 -58 1460 264 138 22 chr1 238504535 238505077 -4159276 + L2 LINE L2 1082 1686 -1628 349 269 140 11 chr1 238506517 238506703 -4157650 + L1MC4a LINE L1 5616 5825 -1983 626 255 28 4 chr1 238507152 238507334 -4157019 + L1MC4a LINE L1 5658 5833 -351 1522 159 59 0 chr1 238507335 238507605 -4156748 + AluJo SINE Alu 7 292 -20 231 203 0 34 chr1 238507657 238507716 -4156637 + L1MC/D LINE L1 5847 5903 -1905 2423 64 0 0 chr1 238507723 238508018 -4156335 + AluY SINE Alu 1 295 -16 2697 147 32 5 chr1 238508039 238508480 -4155873 + MER31A LTR ERV1 33 485 0 927 182 121 15 chr1 238508531 238508729 -4155624 + MER58A DNA MER1_type 6 224 0 22 0 0 0 chr1 238509192 238509214 -4155139 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 238509814 238509836 -4154517 + AT_rich Low_complexity Low_complexity 1 22 0 889 128 0 0 chr1 238509979 238510112 -4154241 + AluJb SINE Alu 1 133 -179 2962 169 52 16 chr1 238511194 238511752 -4152601 + MER50 LTR ERV1 1 578 -156 1778 118 23 0 chr1 238511761 238512024 -4152329 - AluSx SINE Alu -43 269 1 1693 175 12 45 chr1 238512025 238512229 -4152124 - MER34C LTR ERV1 -192 393 203 1991 129 0 0 chr1 238512229 238512523 -4151830 - AluSx SINE Alu -14 298 5 1693 175 12 45 chr1 238512523 238512645 -4151708 - MER34C LTR ERV1 -382 203 78 481 168 80 88 chr1 238512645 238512782 -4151571 + LTR23 LTR ERV1 1 136 -301 284 174 163 11 chr1 238512888 238512980 -4151373 + MLT1L LTR MaLR 169 274 -341 980 113 0 0 chr1 238512992 238513125 -4151228 + AluSq/x SINE Alu 1 133 -179 1290 169 96 22 chr1 238513125 238513397 -4150956 + L1M3 LINE L1 5476 5767 -416 2131 125 0 0 chr1 238513399 238513711 -4150642 + AluSx SINE Alu 1 312 0 181 239 60 30 chr1 238514754 238514821 -4149532 + MIR SINE MIR 74 142 -66 1946 106 15 0 chr1 238514832 238515106 -4149247 + AluSx SINE Alu 10 287 -25 796 148 0 0 chr1 238515246 238515361 -4148992 - FLAM_C SINE Alu -27 116 2 2227 88 20 0 chr1 238515993 238516290 -4148063 - AluSg SINE Alu -7 303 1 1402 174 11 8 chr1 238517756 238518020 -4146333 - AluJo SINE Alu -17 295 31 1513 76 5 9 chr1 238518181 238518391 -4145962 + AluSp SINE Alu 1 209 -104 2402 193 128 6 chr1 238518895 238519444 -4144909 - MLT1E2 LTR MaLR -3 623 8 1905 112 31 7 chr1 238519789 238520103 -4144250 - AluSg SINE Alu 0 310 1 2336 111 56 8 chr1 238520653 238521030 -4143323 - L1MB2 LINE L1 0 6171 5777 7303 33 5 0 chr1 238521048 238521904 -4142449 - L1PA5 LINE L1 -1 6153 5294 608 150 31 63 chr1 238521924 238522051 -4142302 - L1MB2 LINE L1 -427 5756 5634 264 254 0 0 chr1 238522061 238522116 -4142237 - L1M4 LINE L1 -1543 4603 4549 389 259 94 80 chr1 238522233 238522519 -4141834 - L2 LINE L2 -135 3178 2889 2227 68 31 0 chr1 238522820 238523113 -4141240 - AluY SINE Alu -9 302 1 4440 150 30 21 chr1 238523241 238523637 -4140716 + LTR23-int LTR ERV1 4839 5230 -1101 2159 123 0 0 chr1 238523637 238523937 -4140416 + AluSx SINE Alu 1 300 -12 4440 150 30 21 chr1 238523937 238524362 -4139991 + LTR23-int LTR ERV1 5230 5668 -663 616 214 0 0 chr1 238524379 238524496 -4139857 + LTR23-int LTR ERV1 4784 4900 -223 2344 139 58 7 chr1 238524617 238525028 -4139325 + LTR23 LTR ERV1 1 432 -5 401 40 20 0 chr1 238525032 238525082 -4139271 - MER34C LTR ERV1 -503 82 32 2306 82 3 0 chr1 238525223 238525526 -4138827 + AluSp SINE Alu 1 304 -9 848 242 100 31 chr1 238525618 238525905 -4138448 - REP3 LTR ERV -24 538 232 285 233 48 19 chr1 238525905 238526008 -4138345 - LTR23 LTR ERV1 0 437 332 1879 137 0 17 chr1 238526050 238526350 -4138003 - AluSx SINE Alu -17 295 1 297 198 0 0 chr1 238526368 238526449 -4137904 + T-rich Low_complexity Low_complexity 1 81 0 2127 75 12 50 chr1 238526452 238526494 -4137859 - AluY SINE Alu -2 309 267 207 0 0 0 chr1 238526494 238526517 -4137836 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 2127 75 12 50 chr1 238526517 238526795 -4137558 - AluY SINE Alu -44 267 1 1008 188 89 68 chr1 238526799 238527124 -4137229 - LTR56 LTR ERV1 -113 332 1 702 241 32 37 chr1 238527124 238527340 -4137013 - REP3 LTR ERV -327 235 21 2095 176 16 10 chr1 238527386 238527569 -4136784 + MLT1B LTR MaLR 1 182 -208 1760 115 27 0 chr1 238527569 238527830 -4136523 + AluSx SINE Alu 1 268 -44 2095 176 16 10 chr1 238527830 238528033 -4136320 + MLT1B LTR MaLR 182 389 -1 669 186 72 18 chr1 238528349 238528444 -4135909 - MER53 DNA DNA 0 189 101 270 0 0 0 chr1 238528444 238528474 -4135879 + (TA)n Simple_repeat Simple_repeat 2 31 0 1534 195 10 7 chr1 238528474 238528781 -4135572 - AluSx SINE Alu -4 308 1 669 186 72 18 chr1 238528781 238528851 -4135502 - MER53 DNA DNA -87 102 14 622 167 0 10 chr1 238529092 238529194 -4135159 - AluS SINE Alu -211 102 2 964 117 28 39 chr1 238529224 238529404 -4134949 - L1PB2 LINE L1 -7 6144 5967 332 85 0 0 chr1 238529684 238529731 -4134622 - MLT2A1 LTR ERVL -8 445 399 355 115 0 18 chr1 238529747 238529846 -4134507 + (TA)n Simple_repeat Simple_repeat 1 97 0 1444 87 5 0 chr1 238529831 238530026 -4134327 - MLT2A1 LTR ERVL -40 404 209 851 110 0 83 chr1 238530773 238530918 -4133435 + FLAM_C SINE Alu 1 133 0 1753 156 6 53 chr1 238531183 238531504 -4132849 - AluJo SINE Alu -6 306 1 2015 97 7 11 chr1 238532453 238532732 -4131621 + AluSq SINE Alu 1 278 -35 2049 96 32 0 chr1 238532741 238533023 -4131330 + AluSq SINE Alu 1 291 -22 232 280 176 0 chr1 238533508 238533633 -4130720 + MIR SINE MIR 46 192 -70 644 283 104 81 chr1 238533795 238534567 -4129786 + L2 LINE L2 87 906 -2408 2432 89 0 0 chr1 238534567 238534871 -4129482 - AluSx SINE Alu -8 304 1 644 283 104 81 chr1 238534871 238535461 -4128892 + L2 LINE L2 906 1481 -1833 2205 108 0 7 chr1 238535531 238535826 -4128527 - AluSx SINE Alu -19 293 1 818 243 99 66 chr1 238536013 238536166 -4128187 - L1ME3A LINE L1 -208 5962 5816 2322 101 0 13 chr1 238536166 238536483 -4127870 - AluSq SINE Alu 0 313 1 818 243 99 66 chr1 238536483 238536691 -4127662 - L1ME3A LINE L1 -354 5816 5589 2076 111 10 13 chr1 238537240 238537546 -4126807 + AluSg SINE Alu 1 305 -5 201 222 0 0 chr1 238537546 238537582 -4126771 + polypurine Low_complexity Low_complexity 1 36 0 1034 245 78 76 chr1 238537700 238537954 -4126399 - L1ME3A LINE L1 -581 5581 5329 2158 110 0 0 chr1 238537954 238538274 -4126079 - AluSx SINE Alu 0 322 3 1034 245 78 76 chr1 238538274 238538470 -4125883 - L1ME3A LINE L1 -833 5329 5135 2835 43 31 6 chr1 238538470 238538822 -4125531 + L1PA8 LINE L1 5805 6165 -7 1034 245 78 76 chr1 238538822 238538906 -4125447 - L1ME3A LINE L1 -1027 5135 5053 772 165 8 8 chr1 238538906 238539039 -4125314 - FLAM_C SINE Alu 0 133 1 1034 245 78 76 chr1 238539039 238539445 -4124908 - L1ME3A LINE L1 -1109 5053 4628 227 133 0 0 chr1 238539511 238539556 -4124797 + LTR66 LTR ERVL 395 439 -171 2040 154 0 0 chr1 238539571 238539876 -4124477 - AluSx SINE Alu -7 305 1 277 204 0 0 chr1 238539926 238539980 -4124373 - FLAM SINE Alu -2 131 78 1517 115 5 0 chr1 238540087 238540296 -4124057 + AluSg/x SINE Alu 101 310 -2 2121 99 0 3 chr1 238540701 238541020 -4123333 + AluSg SINE Alu 1 318 0 183 100 0 0 chr1 238541023 238541053 -4123300 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 304 277 10 0 chr1 238541232 238541333 -4123020 + MIR SINE MIR 112 213 -49 2147 108 3 13 chr1 238541356 238541670 -4122683 + AluY SINE Alu 1 311 0 838 153 8 0 chr1 238542071 238542202 -4122151 + AluJo/FLAM SINE Alu 1 132 -170 1423 113 0 54 chr1 238542203 238542264 -4122089 + AluJo SINE Alu 82 145 -167 2462 91 0 0 chr1 238542264 238542562 -4121791 + AluSg SINE Alu 1 298 -12 1423 113 0 54 chr1 238542562 238542721 -4121632 + AluJo SINE Alu 145 290 -22 2160 116 0 0 chr1 238542732 238543025 -4121328 + AluSg SINE Alu 1 293 -17 838 122 0 38 chr1 238543178 238543309 -4121044 - FLAM_C SINE Alu -6 127 2 1863 124 14 18 chr1 238543429 238543736 -4120617 + AluSx SINE Alu 1 306 0 2357 89 3 13 chr1 238543745 238544061 -4120292 + AluSp SINE Alu 1 313 0 273 305 11 68 chr1 238545081 238545132 -4119221 - MIR SINE MIR -20 242 190 2485 55 0 22 chr1 238545132 238545443 -4118910 - AluY SINE Alu -6 305 2 273 305 11 68 chr1 238545443 238545568 -4118785 - MIR SINE MIR -72 190 76 414 90 45 0 chr1 238545965 238546032 -4118321 + MER53 DNA DNA 14 83 -106 2013 150 7 0 chr1 238546035 238546341 -4118012 + AluSx SINE Alu 1 308 -4 261 0 0 0 chr1 238546341 238546370 -4117983 + (TA)n Simple_repeat Simple_repeat 2 30 0 530 270 23 23 chr1 238546482 238546656 -4117697 - MIR SINE MIR -77 185 12 437 323 52 39 chr1 238546683 238546912 -4117441 + L1MC/D LINE L1 5411 5642 -2166 245 197 30 15 chr1 238546972 238547038 -4117315 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 4063 141 38 57 chr1 238547288 238548089 -4116264 + LTR1 LTR ERV1 1 785 0 1708 115 32 4 chr1 238548327 238548605 -4115748 - L1MA5A LINE L1 -4 6293 6008 1587 117 12 51 chr1 238548609 238548866 -4115487 + MER1B DNA MER1_type 133 339 0 367 225 170 107 chr1 238549018 238549271 -4115082 - L2 LINE L2 -1489 1825 1557 876 276 93 21 chr1 238549374 238549805 -4114548 + LTR16B LTR ERVL 3 464 0 480 330 31 9 chr1 238549815 238550042 -4114311 + HERV16 LTR ERVL 12 243 -4753 359 360 42 33 chr1 238550141 238550472 -4113881 + HERV16 LTR ERVL 390 723 -4273 1562 244 65 34 chr1 238550538 238551402 -4112951 + HERV16 LTR ERVL 1688 2669 -3095 1599 200 200 32 chr1 238552222 238552686 -4111667 + MLT1F LTR MaLR 1 542 0 590 234 226 8 chr1 238552881 238553242 -4111111 + LTR50 LTR ERVL 216 743 -52 32 98 0 0 chr1 238553305 238553407 -4110946 + AT_rich Low_complexity Low_complexity 1 102 0 180 0 0 0 chr1 238554093 238554113 -4110240 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1135 82 20 0 chr1 238554113 238554259 -4110094 - AluSq SINE Alu -28 285 137 24 0 0 0 chr1 238554885 238554909 -4109444 + AT_rich Low_complexity Low_complexity 1 24 0 2470 159 16 21 chr1 238555198 238555625 -4108728 + MSTC LTR MaLR 4 428 0 29 28 0 0 chr1 238556234 238556270 -4108083 + AT_rich Low_complexity Low_complexity 1 36 0 1529 208 112 0 chr1 238556817 238557130 -4107223 - MER7A DNA MER2_type 0 346 1 1511 175 3 54 chr1 238557267 238557587 -4106766 + AluJo SINE Alu 1 305 0 235 146 354 0 chr1 238557590 238557672 -4106681 - L2 LINE L2 -4 3309 3199 1738 176 72 52 chr1 238557838 238558224 -4106129 - MSTD LTR MaLR -2 394 1 2226 110 7 13 chr1 238559934 238560244 -4104109 + AluSp SINE Alu 1 308 -5 533 248 29 21 chr1 238561219 238561457 -4102896 + L1M4 LINE L1 2385 2624 -3522 702 101 34 0 chr1 238562441 238562650 -4101703 + (TA)n Simple_repeat Simple_repeat 1 216 0 306 152 0 0 chr1 238562759 238562805 -4101548 - Alu SINE Alu -256 46 1 295 258 108 0 chr1 238562815 238562908 -4101445 - HERV16 LTR ERVL -2197 2799 2697 216 306 59 12 chr1 238563028 238563113 -4101240 - MIR SINE MIR -154 108 20 347 306 75 25 chr1 238563297 238563457 -4100896 - HERV16 LTR ERVL -3114 2540 2373 451 202 67 0 chr1 238563480 238563569 -4100784 - LTR16A LTR ERVL 0 450 356 374 333 0 12 chr1 238563577 238563739 -4100614 - HERV16 LTR ERVL -4301 1353 1194 621 175 83 0 chr1 238564044 238564164 -4100189 + FLAM_A SINE Alu 1 130 -3 2302 165 23 10 chr1 238564176 238564828 -4099525 + L1MC/D LINE L1 4999 5654 -679 805 147 0 15 chr1 238564829 238564965 -4099388 + AluJb SINE Alu 178 311 -1 2410 103 0 0 chr1 238564980 238565290 -4099063 + AluSg SINE Alu 1 310 0 1873 234 63 35 chr1 238565291 238566164 -4098189 + L1MEc LINE L1 1875 2741 -3474 204 125 0 0 chr1 238566487 238566519 -4097834 + (CA)n Simple_repeat Simple_repeat 1 32 0 2191 101 7 3 chr1 238566734 238567032 -4097321 - AluSx SINE Alu -13 299 1 402 289 111 16 chr1 238567113 238567303 -4097050 + MIR SINE MIR 41 248 -14 570 197 78 63 chr1 238567520 238567717 -4096636 + MIR SINE MIR 37 252 -10 2275 100 3 0 chr1 238567719 238568009 -4096344 - AluSx SINE Alu -18 294 4 807 306 222 38 chr1 238569795 238572115 -4092238 + L2 LINE L2 231 2975 -339 2021 107 38 14 chr1 238572272 238572562 -4091791 + AluSx SINE Alu 1 297 -15 566 121 132 0 chr1 238573455 238573566 -4090787 - FLAM_C SINE Alu 0 136 14 264 83 0 0 chr1 238573689 238573725 -4090628 - MLT2F LTR ERVL 0 663 628 224 159 23 0 chr1 238573734 238573778 -4090575 + (TG)n Simple_repeat Simple_repeat 1 45 0 304 194 0 81 chr1 238573802 238573907 -4090446 - MLT2C2 LTR ERVL -51 412 251 313 170 82 0 chr1 238574235 238574320 -4090033 + (TA)n Simple_repeat Simple_repeat 2 103 -44 2243 98 0 35 chr1 238574320 238574636 -4089717 + AluSp SINE Alu 1 305 -8 313 170 82 0 chr1 238574636 238574685 -4089668 + (TA)n Simple_repeat Simple_repeat 103 147 0 330 282 77 0 chr1 238574697 238574814 -4089539 + L2 LINE L2 3187 3312 -1 314 327 14 41 chr1 238574882 238574938 -4089415 - L2 LINE L2 -947 2367 2311 2092 176 80 21 chr1 238574938 238575415 -4088938 + MLT1D LTR MaLR 1 505 0 314 327 14 41 chr1 238575415 238575578 -4088775 - L2 LINE L2 -1003 2311 2154 991 270 273 35 chr1 238575827 238576950 -4087403 + L2 LINE L2 1246 2636 -678 299 123 219 14 chr1 238576958 238577031 -4087322 - MLT1H LTR MaLR -8 541 454 300 220 141 73 chr1 238577139 238577330 -4087023 - MLT1H LTR MaLR -251 298 95 570 319 88 12 chr1 238577387 238577793 -4086560 + L2 LINE L2 2631 3069 -244 37 23 0 0 chr1 238578570 238578614 -4085739 + GC_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 238582278 238582300 -4082053 + AT_rich Low_complexity Low_complexity 1 22 0 182 36 0 36 chr1 238582353 238582381 -4081972 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1904 122 7 0 chr1 238582381 238582652 -4081701 - AluSx SINE Alu -39 273 1 207 263 83 92 chr1 238582888 238583105 -4081248 + L2 LINE L2 2302 2516 -798 738 280 114 31 chr1 238583110 238583460 -4080893 - MLT1L LTR MaLR 0 615 237 251 371 79 11 chr1 238583613 238583791 -4080562 + L2 LINE L2 2521 2710 -604 241 262 16 0 chr1 238584149 238584210 -4080143 + L2 LINE L2 3249 3310 -3 294 29 0 0 chr1 238584726 238584761 -4079592 + (TG)n Simple_repeat Simple_repeat 2 36 0 269 276 155 26 chr1 238586428 238586544 -4077809 - MIR SINE MIR -55 153 23 2170 98 7 7 chr1 238587780 238588076 -4076277 - AluSx SINE Alu -16 296 1 497 222 135 5 chr1 238589472 238589633 -4074720 + MER5A DNA MER1_type 4 188 -1 235 327 118 7 chr1 238589745 238589898 -4074455 - MIR3 SINE MIR -3 205 36 2261 96 3 3 chr1 238590116 238590418 -4073935 - AluSp SINE Alu -11 302 1 361 185 25 37 chr1 238590433 238590514 -4073839 - MIR SINE MIR -81 127 48 647 233 33 56 chr1 238590886 238591066 -4073287 + MER58B DNA MER1_type 1 176 -165 906 209 12 0 chr1 238591439 238591602 -4072751 + MER58B DNA MER1_type 176 340 -1 541 234 164 73 chr1 238591636 238592008 -4072345 - MLT1L LTR MaLR -49 566 161 304 93 23 0 chr1 238592059 238592102 -4072251 + Alu SINE Alu 1 44 -258 334 153 66 153 chr1 238592231 238592459 -4071894 - L1MC5 LINE L1 -212 7749 7542 386 187 66 22 chr1 238592461 238592501 -4071852 - L1MC5 LINE L1 -870 7091 7054 1718 166 7 0 chr1 238592501 238592772 -4071581 + AluJb SINE Alu 1 273 -39 386 187 66 22 chr1 238592772 238592822 -4071531 - L1MC5 LINE L1 -907 7054 6997 2980 178 50 16 chr1 238592822 238593366 -4070987 + MER68 LTR ERV1 1 562 0 1307 99 11 16 chr1 238593387 238593569 -4070784 + AluSx SINE Alu 1 181 -131 589 243 120 49 chr1 238599607 238599721 -4064632 + L1MC4a LINE L1 6070 6174 -1634 3836 66 262 2 chr1 238599721 238600267 -4064086 + LTR12 LTR ERV1 1 688 0 589 243 120 49 chr1 238600267 238600502 -4063851 + L1MC4a LINE L1 6174 6444 -1364 1169 108 0 51 chr1 238600525 238600701 -4063652 + MER1B DNA MER1_type 172 338 -1 2184 243 164 88 chr1 238600705 238601682 -4062671 + L1MC4 LINE L1 6455 7356 -686 1772 144 65 0 chr1 238601682 238601959 -4062394 - AluJb SINE Alu -17 295 1 2184 243 164 88 chr1 238601959 238602231 -4062122 + L1MC4 LINE L1 7356 7606 -436 1935 147 13 7 chr1 238602231 238602531 -4061822 - AluSx SINE Alu -10 302 1 2184 243 164 88 chr1 238602531 238602755 -4061598 + L1MC4 LINE L1 7606 8042 0 1502 122 9 22 chr1 238602859 238603088 -4061265 + AluJb SINE Alu 82 307 -5 1807 141 0 18 chr1 238604192 238604475 -4059878 - AluJo SINE Alu -22 290 13 4215 185 59 43 chr1 238604723 238605742 -4058611 + L1MB8 LINE L1 3300 4301 -1877 2343 75 0 3 chr1 238605742 238606035 -4058318 + AluY SINE Alu 1 292 -19 4215 185 59 43 chr1 238606035 238607792 -4056561 + L1MB8 LINE L1 4301 6178 0 2196 93 20 13 chr1 238607828 238608128 -4056225 + AluSx SINE Alu 1 302 -10 2139 101 7 0 chr1 238609217 238609518 -4054835 - AluSg SINE Alu 0 303 1 2288 120 47 17 chr1 238609575 238609934 -4054419 - MSTB LTR MaLR 0 426 57 888 138 0 8 chr1 238609934 238610064 -4054289 - FLAM_C SINE Alu -14 129 1 416 94 0 0 chr1 238610064 238610117 -4054236 - MSTB LTR MaLR -371 55 3 824 288 45 5 chr1 238611390 238611612 -4052741 + MIR SINE MIR 28 258 -4 2167 121 3 0 chr1 238611856 238612153 -4052200 + AluSq SINE Alu 2 299 -14 789 137 0 0 chr1 238612455 238612579 -4051774 + AluSg/x SINE Alu 188 311 -1 2618 46 0 0 chr1 238612633 238612939 -4051414 + AluY SINE Alu 1 306 -5 21 82 0 0 chr1 238612957 238613006 -4051347 + AT_rich Low_complexity Low_complexity 1 49 0 807 140 9 0 chr1 238613040 238613154 -4051199 + FLAM_C SINE Alu 1 115 -28 655 112 11 0 chr1 238613258 238613347 -4051006 + AluS SINE Alu 2 91 -222 2300 101 0 7 chr1 238613646 238613954 -4050399 - AluSx SINE Alu -6 306 1 740 161 15 130 chr1 238613954 238614050 -4050303 - L1M4 LINE L1 -696 5488 5383 780 176 25 0 chr1 238614050 238614169 -4050184 - FLAM_A SINE Alu -9 124 3 740 161 15 130 chr1 238614169 238614434 -4049919 - L1M4 LINE L1 -801 5383 5173 1833 156 0 13 chr1 238614438 238614739 -4049614 - AluJb SINE Alu -15 297 1 842 157 0 14 chr1 238614739 238614879 -4049474 - AluJb SINE Alu -15 297 160 3252 186 51 45 chr1 238614899 238615680 -4048673 - L1M4 LINE L1 -934 5212 4427 2361 93 0 31 chr1 238615789 238616111 -4048242 - AluSq SINE Alu -1 312 1 816 159 7 14 chr1 238616467 238616605 -4047748 - Charlie4 DNA MER1_type -2 1959 1823 895 232 5 0 chr1 238616606 238616796 -4047557 - AluJo SINE Alu 0 312 122 6175 100 42 54 chr1 238616815 238616984 -4047369 - L1MA2 LINE L1 -6 7717 7548 2012 123 7 0 chr1 238616984 238617253 -4047100 - AluSx SINE Alu -16 296 26 6175 100 42 54 chr1 238617253 238618129 -4046224 - L1MA2 LINE L1 -175 7548 6680 1688 188 14 0 chr1 238618142 238618434 -4045919 - AluJb SINE Alu -16 296 1 272 79 0 0 chr1 238618434 238618472 -4045881 - L1MA2 LINE L1 -1004 6717 6680 1129 128 0 0 chr1 238618472 238618657 -4045696 - AluSg/x SINE Alu 0 310 126 454 193 0 11 chr1 238618661 238618749 -4045604 - L1MA2 LINE L1 -887 6678 6592 323 253 0 0 chr1 238618755 238618834 -4045519 - L1MA2 LINE L1 -1072 6493 6415 1192 144 0 0 chr1 238618834 238619008 -4045345 - AluJb SINE Alu -10 302 129 4427 179 57 12 chr1 238619011 238619040 -4045313 - L1MA2 LINE L1 -2372 5193 5167 2127 98 0 52 chr1 238619040 238619346 -4045007 - AluSx SINE Alu -22 290 1 4427 179 57 12 chr1 238619346 238619420 -4044933 - L1MA2 LINE L1 -2398 5167 5098 246 32 0 0 chr1 238619420 238619451 -4044902 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4427 179 57 12 chr1 238619451 238619934 -4044419 - L1MA2 LINE L1 -2467 5098 4544 1486 212 6 13 chr1 238619934 238620245 -4044108 - AluJb SINE Alu -3 309 1 4427 179 57 12 chr1 238620245 238620620 -4043733 - L1MA2 LINE L1 -3021 4544 4187 1982 101 18 4 chr1 238620620 238620896 -4043457 - AluSc SINE Alu -6 303 24 18373 130 28 17 chr1 238620897 238620975 -4043378 - L1MA2 LINE L1 -4645 2920 2844 2225 115 7 0 chr1 238620975 238621279 -4043074 - AluSp SINE Alu -7 306 1 18373 130 28 17 chr1 238621279 238623997 -4040356 - L1MA2 LINE L1 -4721 2844 90 414 0 0 0 chr1 238623997 238624043 -4040310 + (TG)n Simple_repeat Simple_repeat 2 47 0 18373 130 28 17 chr1 238624043 238624122 -4040231 - L1MA2 LINE L1 -7475 90 13 203 118 59 0 chr1 238624126 238624160 -4040193 + CT-rich Low_complexity Low_complexity 1 36 0 1552 170 98 0 chr1 238624160 238624436 -4039917 - AluJo SINE Alu -9 303 1 1163 227 86 17 chr1 238624479 238624770 -4039583 - Charlie4a DNA MER1_type -196 312 2 2345 91 0 23 chr1 238625177 238625484 -4038869 - AluSp SINE Alu -13 300 1 190 327 67 10 chr1 238625993 238626097 -4038256 + L2 LINE L2 3169 3278 -35 2143 134 0 13 chr1 238626758 238627072 -4037281 + AluSg SINE Alu 1 310 0 302 75 75 38 chr1 238627495 238627548 -4036805 - MLT2B1 LTR ERVL 0 520 466 374 107 0 18 chr1 238627550 238627606 -4036747 - MSTC LTR MaLR 0 428 374 1372 96 0 0 chr1 238627606 238627784 -4036569 - AluSq SINE Alu -3 310 133 930 111 0 8 chr1 238627784 238627910 -4036443 - MSTC LTR MaLR -303 125 1 1720 201 106 34 chr1 238627910 238628023 -4036330 - MLT2B1 LTR ERVL -46 474 371 2243 99 10 22 chr1 238628023 238628335 -4036018 - AluSx SINE Alu -4 308 1 1720 201 106 34 chr1 238628335 238628663 -4035690 - MLT2B1 LTR ERVL -149 371 1 861 247 61 4 chr1 238628677 238628908 -4035445 + L1ME3A LINE L1 5914 6157 -13 1911 133 7 21 chr1 238628914 238629117 -4035236 - AluSx SINE Alu 0 311 112 3933 92 8 4 chr1 238629117 238629626 -4034727 + MER9 LTR ERVK 1 511 0 1911 133 7 21 chr1 238629626 238629736 -4034617 - AluSx SINE Alu -199 112 2 333 261 34 19 chr1 238630520 238630643 -4033710 + MIR SINE MIR 34 159 -49 1627 171 6 47 chr1 238630655 238630800 -4033553 + AluJo SINE Alu 1 150 -162 2376 100 3 3 chr1 238630800 238631109 -4033244 + AluSg SINE Alu 1 309 -1 1627 171 6 47 chr1 238631109 238631284 -4033069 + AluJo SINE Alu 150 308 -4 1672 145 34 0 chr1 238631589 238631851 -4032502 - AluJo SINE Alu -41 271 1 1947 110 48 7 chr1 238632130 238632421 -4031932 + AluSx SINE Alu 3 305 -7 1668 157 0 39 chr1 238632430 238632735 -4031618 + AluJo SINE Alu 1 293 -19 2162 113 0 3 chr1 238632742 238633052 -4031301 + AluSg SINE Alu 1 309 -1 356 223 58 25 chr1 238633686 238633807 -4030546 - MIR SINE MIR -50 212 88 3914 234 94 111 chr1 238634689 238635968 -4028385 + L2 LINE L2 764 2064 -1249 1487 173 52 0 chr1 238635968 238636240 -4028113 - AluJo SINE Alu -26 286 1 3914 234 94 111 chr1 238636240 238636266 -4028087 + L2 LINE L2 2064 2089 -1224 314 119 0 0 chr1 238636266 238636308 -4028045 - Alu SINE Alu -261 42 1 3914 234 94 111 chr1 238636308 238636325 -4028028 + L2 LINE L2 2089 2105 -1208 349 108 50 19 chr1 238636325 238636397 -4027956 - AluJ/FLAM SINE Alu -241 61 1 3914 234 94 111 chr1 238636397 238636564 -4027789 + L2 LINE L2 2105 2273 -1040 2170 80 3 30 chr1 238636564 238636863 -4027490 - AluSx SINE Alu -21 291 1 3914 234 94 111 chr1 238636863 238637606 -4026747 + L2 LINE L2 2273 3144 -169 1979 142 7 0 chr1 238637606 238637901 -4026452 + AluSx SINE Alu 1 297 -15 3914 234 94 111 chr1 238637901 238638006 -4026347 + L2 LINE L2 3144 3249 -64 586 294 34 64 chr1 238638231 238638350 -4026003 + MIR SINE MIR 6 127 -135 2132 112 3 0 chr1 238638350 238638654 -4025699 - AluSx SINE Alu -7 305 1 586 294 34 64 chr1 238638654 238638799 -4025554 + MIR SINE MIR 127 262 0 1342 208 10 20 chr1 238638828 238639131 -4025222 + AluJo SINE Alu 5 304 -8 378 276 12 0 chr1 238639181 238639344 -4025009 - HAL1 LINE L1 -331 2176 2012 552 269 105 38 chr1 238639348 238639687 -4024666 - L1ME2 LINE L1 -1 6163 5795 1655 26 0 0 chr1 238639687 238639878 -4024475 - L1PA5 LINE L1 -3 6151 5961 552 269 105 38 chr1 238639878 238639910 -4024443 - L1ME2 LINE L1 -369 5795 5767 201 381 48 24 chr1 238639929 238640097 -4024256 + L3b LINE CR1 1292 1463 -120 2119 84 42 0 chr1 238640110 238640394 -4023959 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 238640595 238640616 -4023737 + AT_rich Low_complexity Low_complexity 1 21 0 383 145 0 58 chr1 238640813 238640882 -4023471 - MSTD LTR MaLR 0 396 332 983 114 13 0 chr1 238640882 238641031 -4023322 + AluJb SINE Alu 1 151 -161 581 170 0 155 chr1 238641033 238641233 -4023120 + MER5B DNA MER1_type 10 178 0 231 219 0 0 chr1 238641239 238641280 -4023073 - MER5B DNA MER1_type -137 41 1 259 171 0 0 chr1 238641286 238641327 -4023026 + MER5B DNA MER1_type 138 178 0 255 173 0 77 chr1 238641798 238641850 -4022503 + MER3 DNA MER1_type 40 87 -122 1443 164 4 0 chr1 238641853 238642097 -4022256 - AluJb SINE Alu -36 276 32 344 190 13 51 chr1 238642197 238642276 -4022077 + AluS SINE Alu 221 296 -6 1590 146 20 34 chr1 238642282 238642576 -4021777 + AluJo SINE Alu 1 290 -22 2179 84 0 0 chr1 238642602 238642887 -4021466 + AluSx SINE Alu 1 285 -27 761 163 26 46 chr1 238642908 238643061 -4021292 - MER3 DNA MER1_type -59 150 1 228 35 0 0 chr1 238643998 238644027 -4020326 + (TG)n Simple_repeat Simple_repeat 2 30 0 1416 225 36 0 chr1 238644566 238644922 -4019431 + L1M4 LINE L1 4138 4506 -1640 733 101 0 0 chr1 238645022 238645131 -4019222 + AluSg/x SINE Alu 197 305 -4 2093 230 44 109 chr1 238645408 238646071 -4018282 + L1MC5 LINE L1 6544 7117 -844 2232 88 3 0 chr1 238646071 238646367 -4017986 + AluSc SINE Alu 4 300 -9 2093 230 44 109 chr1 238646367 238646763 -4017590 + L1MC5 LINE L1 7117 7537 -424 516 133 204 0 chr1 238646772 238646870 -4017483 - FLAM_C SINE Alu -15 118 1 350 280 84 14 chr1 238646986 238647129 -4017224 + L1ME3A LINE L1 6010 6162 -8 2136 104 7 3 chr1 238647584 238647881 -4016472 - AluSx SINE Alu -14 298 1 1517 142 25 3 chr1 238648825 238649107 -4015246 - AluSx SINE Alu -24 288 1 2187 108 0 0 chr1 238650193 238650490 -4013863 + AluSx SINE Alu 1 297 -15 1746 160 0 7 chr1 238650559 238650847 -4013506 - AluJo SINE Alu -12 300 15 1110 275 11 0 chr1 238650902 238651171 -4013182 + LTR16A LTR ERVL 154 425 -25 856 123 158 53 chr1 238651225 238651310 -4013043 + MER30B DNA MER1_type 1 76 -114 1930 123 10 17 chr1 238651310 238651611 -4012742 + AluSx SINE Alu 2 300 -12 856 123 158 53 chr1 238651611 238651696 -4012657 + MER30B DNA MER1_type 76 189 -1 2314 80 0 0 chr1 238651697 238651996 -4012357 - AluSc SINE Alu -10 299 1 827 122 17 0 chr1 238652015 238652130 -4012223 - AluSq/x SINE Alu -194 119 3 1005 163 6 6 chr1 238652207 238652379 -4011974 + FAM SINE Alu 1 172 -3 372 254 130 16 chr1 238652658 238652805 -4011548 + MIR3 SINE MIR 3 164 -57 2228 93 3 0 chr1 238652911 238653213 -4011140 + AluSx SINE Alu 1 303 -9 1410 110 14 5 chr1 238653391 238653600 -4010753 + MER20 DNA MER1_type 5 215 -4 1100 81 0 0 chr1 238654105 238654254 -4010099 + AluSp/q SINE Alu 156 304 -9 320 246 0 0 chr1 238654377 238654442 -4009911 - L2 LINE L2 -22 3250 3186 804 182 0 8 chr1 238654593 238654725 -4009628 - FLAM_A SINE Alu -2 131 1 265 284 97 45 chr1 238655074 238655208 -4009145 + HAL1 LINE L1 1 141 -2366 242 232 29 0 chr1 238656201 238656270 -4008083 + (CGGGG)n Simple_repeat Simple_repeat 2 72 0 258 323 75 15 chr1 238657096 238657229 -4007124 + L2 LINE L2 3173 3313 0 393 242 11 11 chr1 238657288 238657379 -4006974 + MIR SINE MIR 63 153 -109 451 231 197 45 chr1 238657607 238657817 -4006536 + MIR SINE MIR 10 248 -14 1034 136 40 201 chr1 238658068 238658237 -4006116 + L1MB7 LINE L1 5800 5860 -324 2143 96 7 3 chr1 238658237 238658539 -4005814 - AluSx SINE Alu -9 303 1 1034 136 40 201 chr1 238658539 238658796 -4005557 + L1MB7 LINE L1 5860 6157 -27 2250 84 3 0 chr1 238658807 238659094 -4005259 - AluSq SINE Alu -25 288 1 325 157 11 121 chr1 238659102 238659142 -4005211 - L1MB5 LINE L1 0 6180 6137 2429 65 13 0 chr1 238659142 238659448 -4004905 - AluSp SINE Alu -3 310 1 325 157 11 121 chr1 238659448 238659510 -4004843 - L1MB5 LINE L1 -43 6137 6080 2170 92 14 0 chr1 238659815 238660109 -4004244 - AluSp SINE Alu -15 298 1 762 121 0 100 chr1 238660136 238660276 -4004077 + AluJb SINE Alu 1 126 -186 2238 97 0 10 chr1 238660449 238660760 -4003593 + AluSx SINE Alu 1 308 -4 1891 91 7 0 chr1 238661113 238661389 -4002964 - AluSg SINE Alu -31 279 2 530 283 191 29 chr1 238661710 238661899 -4002454 - L2 LINE L2 -1405 1909 1752 1983 107 17 10 chr1 238661899 238662189 -4002164 - AluSx SINE Alu -20 292 1 530 283 191 29 chr1 238662189 238662381 -4001972 - L2 LINE L2 -1562 1752 1466 24 32 0 0 chr1 238663241 238663272 -4001081 + AT_rich Low_complexity Low_complexity 1 31 0 182 270 174 43 chr1 238663279 238663394 -4000959 - MER5A DNA MER1_type 0 189 60 345 225 7 94 chr1 238663870 238664008 -4000345 - FLAM_C SINE Alu -7 126 1 361 323 56 36 chr1 238664086 238664281 -4000072 + L1MC5 LINE L1 7763 7961 0 1972 103 0 7 chr1 238664631 238664921 -3999432 + AluSx SINE Alu 1 288 -24 642 243 23 42 chr1 238665079 238665293 -3999060 + L1MC5 LINE L1 7701 7910 -51 442 360 37 24 chr1 238665341 238665669 -3998684 - L2 LINE L2 -1391 1923 1592 1411 119 64 16 chr1 238665746 238665997 -3998356 + AluJo SINE Alu 42 304 -8 2151 116 0 0 chr1 238666109 238666403 -3997950 + AluSx SINE Alu 1 294 -18 675 192 17 0 chr1 238666441 238666561 -3997792 + AluJb SINE Alu 1 122 -190 1647 129 0 46 chr1 238666680 238666960 -3997393 - AluSq SINE Alu -44 269 3 234 169 34 0 chr1 238667332 238667421 -3996932 + (TA)n Simple_repeat Simple_repeat 1 92 0 1581 152 67 0 chr1 238667421 238667704 -3996649 - AluJb SINE Alu -10 302 1 537 225 54 97 chr1 238667841 238667881 -3996472 - HAL1 LINE L1 -39 2468 2428 2233 112 0 0 chr1 238667881 238668186 -3996167 + AluSx SINE Alu 1 305 -7 537 225 54 97 chr1 238668186 238668403 -3995950 - HAL1 LINE L1 -79 2428 2222 235 297 68 57 chr1 238668571 238668763 -3995590 + L2 LINE L2 2598 2791 -523 478 236 118 0 chr1 238669951 238670078 -3994275 - L2 LINE L2 0 3313 3172 203 272 324 0 chr1 238670147 238670283 -3994070 - L2 LINE L2 -398 2916 2737 751 268 228 12 chr1 238670436 238670918 -3993435 - L2 LINE L2 -736 2578 1993 2549 145 24 63 chr1 238671025 238671180 -3993173 - L1MB7 LINE L1 -314 5870 5710 1983 119 3 7 chr1 238671180 238671475 -3992878 - AluSx SINE Alu -18 294 1 2549 145 24 63 chr1 238671475 238671857 -3992496 - L1MB7 LINE L1 -474 5710 5354 733 183 0 8 chr1 238671896 238672027 -3992326 + FLAM_A SINE Alu 4 133 0 2039 94 24 0 chr1 238672266 238672554 -3991799 + AluSq SINE Alu 11 305 -8 381 208 32 96 chr1 238672711 238672750 -3991603 + L1ME LINE L1 5595 5635 -486 1925 154 3 0 chr1 238672750 238673061 -3991292 - AluJb SINE Alu 0 312 1 381 208 32 96 chr1 238673061 238673146 -3991207 + L1ME LINE L1 5635 5711 -410 2099 100 7 0 chr1 238673302 238673593 -3990760 - AluSx SINE Alu -19 293 1 251 280 13 83 chr1 238673759 238673916 -3990437 + LTR67 LTR ERVL 412 557 0 440 299 194 63 chr1 238674027 238674077 -3990276 + L1MC/D LINE L1 2676 2718 -3428 2253 87 0 7 chr1 238674077 238674376 -3989977 - AluSx SINE Alu -15 297 1 440 299 194 63 chr1 238674376 238674814 -3989539 + L1MC/D LINE L1 2718 3228 -2918 373 288 115 45 chr1 238674805 238675110 -3989243 + L1MC/D LINE L1 4980 5309 -837 * 1836 124 8 0 chr1 238675110 238675376 -3988977 - AluSx SINE Alu -13 299 32 286 248 89 8 chr1 238675396 238675520 -3988833 + L1MC/D LINE L1 5327 5463 -699 931 119 6 85 chr1 238675529 238675706 -3988647 - AluJo SINE Alu -30 282 120 626 132 7 111 chr1 238675711 238675885 -3988468 - FLAM_C SINE Alu 0 163 5 650 261 38 45 chr1 238675895 238676182 -3988171 + L1MC/D LINE L1 5468 5752 -2056 2107 54 4 7 chr1 238676184 238676463 -3987890 + AluSc SINE Alu 1 278 -31 399 83 0 0 chr1 238676817 238676877 -3987476 + (TG)n Simple_repeat Simple_repeat 2 61 0 2514 37 0 0 chr1 238676911 238677206 -3987147 + AluY SINE Alu 1 295 -16 342 195 0 58 chr1 238677670 238677757 -3986596 - HAL1 LINE L1 0 2507 2426 1055 157 16 32 chr1 238677761 238677941 -3986412 + MLT1G1 LTR MaLR 1 177 -418 310 111 0 0 chr1 238677941 238677986 -3986367 - MLT2B2 LTR ERVL 0 515 471 1534 167 3 31 chr1 238678004 238678297 -3986056 - AluJb SINE Alu -22 290 6 2338 85 0 3 chr1 238678323 238678629 -3985724 - AluSq SINE Alu -8 305 1 1983 245 162 52 chr1 238678655 238679146 -3985207 - HAL1 LINE L1 -293 2214 1778 2147 91 0 3 chr1 238679146 238679443 -3984910 - AluSg SINE Alu -14 296 1 1983 245 162 52 chr1 238679443 238679684 -3984669 - HAL1 LINE L1 -729 1778 1565 1770 159 3 0 chr1 238679684 238679986 -3984367 - AluJb SINE Alu -9 303 1 1983 245 162 52 chr1 238679986 238680133 -3984220 - HAL1 LINE L1 -942 1565 1436 2125 94 3 3 chr1 238680133 238680420 -3983933 + AluSq SINE Alu 1 287 -26 180 0 0 0 chr1 238680420 238680440 -3983913 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1983 245 162 52 chr1 238680440 238680538 -3983815 - HAL1 LINE L1 -1070 1437 1126 399 316 76 44 chr1 238680563 238680813 -3983540 - HAL1 LINE L1 -1507 1000 743 593 186 0 90 chr1 238680838 238680854 -3983499 - FLAM_C SINE Alu -170 132 116 2243 108 10 3 chr1 238680854 238681164 -3983189 - AluSx SINE Alu -2 310 3 261 0 0 0 chr1 238681165 238681194 -3983159 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 593 186 0 90 chr1 238681194 238681320 -3983033 - FLAM_C SINE Alu -185 117 1 295 284 53 91 chr1 238681437 238681680 -3982673 - HAL1 LINE L1 -1954 553 320 2040 73 26 43 chr1 238681924 238682061 -3982292 + AluSq SINE Alu 3 141 -172 1990 49 11 19 chr1 238682061 238682325 -3982028 + AluY SINE Alu 38 299 -12 2040 73 26 43 chr1 238682325 238682489 -3981864 + AluSq SINE Alu 141 299 -14 1081 159 30 5 chr1 238682499 238682700 -3981653 + MLT1A1 LTR MaLR 159 364 -1 222 37 0 0 chr1 238683018 238683045 -3981308 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 1507 170 38 42 chr1 238683045 238683334 -3981019 - AluJo SINE Alu -24 288 1 1940 144 10 3 chr1 238683416 238683708 -3980645 - AluSx SINE Alu -18 294 1 1412 96 5 4 chr1 238683716 238683937 -3980416 - AluSp SINE Alu 0 313 2 243 132 75 38 chr1 238683905 238683958 -3980395 - AluSp SINE Alu -134 169 115 * 2442 92 0 0 chr1 238684335 238684640 -3979713 - AluSx SINE Alu -7 305 1 922 179 25 113 chr1 238684742 238684894 -3979459 + MER20 DNA MER1_type 1 126 -93 2308 84 0 3 chr1 238684894 238685191 -3979162 + AluSg SINE Alu 1 296 -14 922 179 25 113 chr1 238685191 238685278 -3979075 + MER20 DNA MER1_type 126 219 0 2032 154 51 36 chr1 238685400 238685815 -3978538 + L1MC1 LINE L1 5913 6333 0 398 257 18 0 chr1 238686113 238686222 -3978131 + MER103 DNA DNA 55 165 -1 25 0 0 0 chr1 238686228 238686253 -3978100 + AT_rich Low_complexity Low_complexity 1 25 0 2363 70 7 13 chr1 238686254 238686554 -3977799 + AluSc SINE Alu 1 298 -11 1109 227 20 8 chr1 238686556 238686803 -3977550 - L1PA16 LINE L1 -24 6142 5893 809 149 0 8 chr1 238686825 238686959 -3977394 - FLAM_C SINE Alu 0 133 1 238 236 0 0 chr1 238687774 238687829 -3976524 + MIR SINE MIR 154 208 -54 2026 109 24 0 chr1 238687832 238688125 -3976228 + AluSp SINE Alu 1 300 -13 1651 164 28 14 chr1 238688390 238688677 -3975676 - AluJb SINE Alu -10 302 12 2136 118 3 83 chr1 238688677 238689040 -3975313 - MER7A DNA MER2_type -14 332 1 2153 119 0 3 chr1 238689097 238689399 -3974954 + AluSx SINE Alu 1 301 -11 457 225 92 0 chr1 238689465 238689585 -3974768 - L1ME3A LINE L1 -8 6162 6032 188 119 0 24 chr1 238689639 238689681 -3974672 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 847 147 0 0 chr1 238689687 238689816 -3974537 - AluSg/x SINE Alu 0 312 184 2119 104 10 7 chr1 238689928 238690225 -3974128 - AluSx SINE Alu -14 298 1 374 229 0 9 chr1 238690225 238690325 -3974028 - L1ME3A LINE L1 -230 5940 5842 2196 100 0 10 chr1 238690492 238690792 -3973561 + AluSx SINE Alu 1 297 -15 490 248 124 0 chr1 238690846 238690991 -3973362 + L1MC4a LINE L1 6563 6725 -1083 2083 113 30 3 chr1 238690992 238691293 -3973060 + AluSg SINE Alu 1 309 -1 24 32 0 0 chr1 238691383 238691414 -3972939 + AT_rich Low_complexity Low_complexity 1 31 0 232 238 49 82 chr1 238691445 238691567 -3972786 + L1MC5 LINE L1 6803 6920 -1041 47 19 0 0 chr1 238691581 238691635 -3972718 + AT_rich Low_complexity Low_complexity 1 54 0 494 208 17 25 chr1 238691680 238691800 -3972553 + L1MC5 LINE L1 6962 7080 -881 379 183 29 22 chr1 238691800 238691937 -3972416 + CT-rich Low_complexity Low_complexity 2 139 0 790 176 15 15 chr1 238691940 238692071 -3972282 - FLAM_C SINE Alu 0 133 3 529 171 99 181 chr1 238692075 238692116 -3972237 + L1MC5 LINE L1 7073 7116 -845 2270 108 7 0 chr1 238692116 238692423 -3971930 - AluSp SINE Alu -4 309 1 529 171 99 181 chr1 238692423 238692813 -3971540 + L1MC5 LINE L1 7116 7469 -492 2226 89 14 0 chr1 238692820 238693120 -3971233 + AluSx SINE Alu 1 304 0 2184 104 13 10 chr1 238693168 238693466 -3970887 + AluSx SINE Alu 1 299 -13 188 292 62 0 chr1 238693998 238694046 -3970307 - L3b LINE CR1 -11 1572 1522 267 178 170 89 chr1 238695414 238695549 -3968804 + L1ME2 LINE L1 5825 5970 -194 21 0 0 0 chr1 238696726 238696747 -3967606 + AT_rich Low_complexity Low_complexity 1 21 0 2276 96 0 23 chr1 238697321 238697624 -3966729 + AluSx SINE Alu 2 297 -15 989 205 120 15 chr1 238697767 238698026 -3966327 + MER2 DNA MER2_type 58 343 -2 2382 78 7 3 chr1 238698449 238698745 -3965608 - AluSx SINE Alu -13 299 3 2154 96 3 30 chr1 238699165 238699468 -3964885 + AluSg SINE Alu 1 295 -15 1027 108 0 0 chr1 238703986 238704116 -3960237 - FLAM_C SINE Alu -3 130 1 31 26 0 0 chr1 238707752 238707790 -3956563 + AT_rich Low_complexity Low_complexity 1 38 0 2096 146 3 3 chr1 238710244 238710553 -3953800 - AluSx SINE Alu -3 309 1 725 168 0 34 chr1 238712905 238713024 -3951329 + FLAM_C SINE Alu 20 134 -9 1861 148 10 3 chr1 238713024 238713322 -3951031 + AluSx SINE Alu 1 300 -12 243 237 53 26 chr1 238717766 238717842 -3946511 - MIR3 SINE MIR -15 193 116 239 179 164 112 chr1 238718391 238718449 -3945904 + L1MB1 LINE L1 6046 6100 -89 1817 172 13 0 chr1 238718449 238718757 -3945596 + AluJb SINE Alu 1 312 0 239 179 164 112 chr1 238718757 238718832 -3945521 + L1MB1 LINE L1 6100 6186 -3 2296 87 7 0 chr1 238718844 238719144 -3945209 + AluSq SINE Alu 4 305 -8 2417 75 7 0 chr1 238719144 238719451 -3944902 + AluY SINE Alu 1 309 -2 2120 81 35 26 chr1 238719464 238719774 -3944579 + AluSp SINE Alu 1 313 0 569 183 0 42 chr1 238719788 238719908 -3944445 + L1MA10 LINE L1 6176 6290 -44 1120 142 6 0 chr1 238719910 238720086 -3944267 - AluSq SINE Alu -16 297 121 633 65 0 65 chr1 238720262 238720354 -3943999 - AluJ/FLAM SINE Alu -225 87 2 1430 136 62 44 chr1 238720990 238721286 -3943067 - AluJb SINE Alu 0 305 5 235 253 42 53 chr1 238721312 238721407 -3942946 + L2 LINE L2 3177 3270 -2 2203 99 20 20 chr1 238721424 238721726 -3942627 + AluSq SINE Alu 1 302 -11 806 152 7 7 chr1 238721736 238721881 -3942472 + L1MB3 LINE L1 5997 6141 -42 22 35 0 0 chr1 238721904 238721933 -3942420 + AT_rich Low_complexity Low_complexity 1 29 0 331 132 0 0 chr1 238721933 238721986 -3942367 + L1MB4 LINE L1 6128 6180 0 1970 83 0 0 chr1 238721986 238722226 -3942127 + AluSc SINE Alu 12 251 -58 2392 90 0 10 chr1 238722655 238722967 -3941386 - AluSx SINE Alu -3 309 1 2193 120 13 0 chr1 238723486 238723823 -3940530 + AluSx SINE Alu 1 341 0 1067 161 146 117 chr1 238723916 238724300 -3940053 + MSTD LTR MaLR 2 396 0 1148 113 0 70 chr1 238724455 238724640 -3939713 + AluSq SINE Alu 1 172 -141 748 261 26 15 chr1 238724644 238724839 -3939514 + MIR SINE MIR 27 223 -39 2681 116 6 3 chr1 238725182 238725544 -3938809 + THE1B LTR MaLR 2 364 0 2226 119 3 0 chr1 238725876 238726203 -3938150 - AluSx SINE Alu 0 328 1 941 117 0 36 chr1 238726224 238726361 -3937992 - FLAM_C SINE Alu -1 132 1 778 259 30 57 chr1 238726473 238726735 -3937618 + MIR SINE MIR 6 260 -2 596 216 150 40 chr1 238726784 238726835 -3937518 + MER112 DNA MER1_type 1 45 -211 2444 94 0 0 chr1 238726835 238727142 -3937211 + AluSc SINE Alu 1 307 -2 596 216 150 40 chr1 238727142 238727317 -3937036 + MER112 DNA MER1_type 45 252 -4 1965 183 91 62 chr1 238727341 238727827 -3936526 + MLT1D LTR MaLR 6 505 0 1988 145 3 0 chr1 238727868 238728189 -3936164 - AluSx SINE Alu 0 312 1 2152 100 0 4 chr1 238728458 238728739 -3935614 - AluSg SINE Alu -30 280 1 522 183 103 71 chr1 238728745 238728871 -3935482 - FLAM_C SINE Alu -2 131 2 2208 116 0 0 chr1 238729418 238729711 -3934642 + AluSx SINE Alu 1 293 -19 670 146 0 0 chr1 238729711 238729814 -3934539 - MLT1B LTR MaLR -285 105 3 935 105 8 8 chr1 238730278 238730411 -3933942 - AluJb SINE Alu -179 133 1 253 119 24 0 chr1 238730411 238730453 -3933900 + L1MA10 LINE L1 6282 6324 -10 214 221 116 77 chr1 238730465 238730597 -3933756 - L2 LINE L2 -410 2904 2762 1524 189 101 21 chr1 238730597 238730935 -3933418 + MLT1A1 LTR MaLR 1 365 0 214 221 116 77 chr1 238730935 238730983 -3933370 - L2 LINE L2 -552 2762 2717 1813 110 0 4 chr1 238731058 238731303 -3933050 - AluSq SINE Alu -59 254 11 765 196 0 0 chr1 238731312 238731445 -3932908 - AluJo/FLAM SINE Alu -169 133 1 487 277 157 0 chr1 238731699 238731865 -3932488 + MIR SINE MIR 64 255 -7 1876 117 55 0 chr1 238731913 238732186 -3932167 + AluSx SINE Alu 1 288 -24 1383 171 12 92 chr1 238732341 238732461 -3931892 + AluJo SINE Alu 1 129 -183 207 0 0 0 chr1 238732461 238732484 -3931869 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1383 171 12 92 chr1 238732484 238732601 -3931752 + AluJo SINE Alu 129 208 -104 2054 123 7 7 chr1 238732601 238732893 -3931460 + AluSx SINE Alu 1 292 -20 1383 171 12 92 chr1 238732893 238732982 -3931371 + AluJo SINE Alu 208 302 -10 396 274 7 68 chr1 238732992 238733102 -3931251 + MIR3 SINE MIR 45 145 -63 1843 164 13 10 chr1 238733102 238733406 -3930947 + AluJo SINE Alu 1 305 -7 396 274 7 68 chr1 238733406 238733441 -3930912 + MIR3 SINE MIR 145 181 -27 2459 66 0 13 chr1 238733603 238733904 -3930449 - AluY SINE Alu -14 297 1 739 149 25 8 chr1 238734026 238734147 -3930206 - FLAM_A SINE Alu -10 123 1 2248 99 0 0 chr1 238734636 238734967 -3929386 - AluSx SINE Alu 0 331 1 1944 140 0 34 chr1 238734986 238735307 -3929046 - AluJb SINE Alu -2 310 1 2235 108 0 3 chr1 238735613 238735909 -3928444 + AluSx SINE Alu 1 295 -17 788 177 144 0 chr1 238736013 238736194 -3928159 - MER3 DNA MER1_type -2 207 1 278 268 32 8 chr1 238736323 238736446 -3927907 + (TA)n Simple_repeat Simple_repeat 1 126 0 375 349 53 0 chr1 238736465 238736597 -3927756 - L2 LINE L2 0 3272 3134 546 265 126 5 chr1 238737097 238737312 -3927041 - MIR SINE MIR -2 260 20 2561 77 0 0 chr1 238737350 238737660 -3926693 + AluY SINE Alu 1 310 -1 259 261 115 24 chr1 238737822 238737953 -3926400 - L2 LINE L2 -220 3052 2913 2321 105 0 3 chr1 238738579 238738883 -3925470 + AluSx SINE Alu 1 303 -9 2117 127 3 0 chr1 238739099 238739399 -3924954 + AluSp SINE Alu 1 301 -12 1804 148 0 35 chr1 238739905 238740215 -3924138 - AluJo SINE Alu 0 310 11 935 129 0 34 chr1 238740331 238740478 -3923875 + FRAM SINE Alu 32 173 -3 190 262 0 0 chr1 238740484 238740526 -3923827 + L2 LINE L2 3018 3059 -213 2256 103 10 0 chr1 238740591 238740883 -3923470 - AluSq SINE Alu -18 295 1 1442 188 24 24 chr1 238741286 238741601 -3922752 - AluJb SINE Alu 0 312 3 1706 83 5 0 chr1 238741610 238741827 -3922526 - AluSp SINE Alu -10 303 86 2225 88 10 14 chr1 238741971 238742293 -3922060 + AluSq SINE Alu 2 313 0 634 214 55 0 chr1 238742293 238742438 -3921915 - HAL1 LINE L1 -340 2167 2015 784 195 56 50 chr1 238742438 238742617 -3921736 - MER63A DNA MER1_type -8 202 44 262 262 25 66 chr1 238742646 238742768 -3921585 - HAL1 LINE L1 -499 2008 1892 1214 123 0 0 chr1 238742768 238742939 -3921414 - AluSg/x SINE Alu -5 305 135 503 266 146 60 chr1 238742939 238743206 -3921147 - HAL1 LINE L1 -605 1902 1613 501 247 102 52 chr1 238743262 238743634 -3920719 - L1MC4 LINE L1 -215 7827 7327 524 223 9 0 chr1 238743640 238743752 -3920601 + MER3 DNA MER1_type 56 168 -41 1557 139 71 42 chr1 238743761 238744141 -3920212 + MER3 DNA MER1_type 2234 2624 0 790 281 164 5 chr1 238744152 238744590 -3919763 - L1MC4 LINE L1 -547 7495 6988 2230 130 0 0 chr1 238744710 238745018 -3919335 + AluSx SINE Alu 1 308 -4 27 0 0 0 chr1 238745335 238745362 -3918991 + AT_rich Low_complexity Low_complexity 1 27 0 2253 93 7 13 chr1 238745564 238745866 -3918487 - AluSx SINE Alu -12 300 1 223 217 162 0 chr1 238746123 238746207 -3918146 + MIR SINE MIR 77 146 -62 2182 107 7 3 chr1 238746280 238746589 -3917764 - AluSx SINE Alu -2 310 1 2286 106 3 0 chr1 238746862 238747163 -3917190 - AluSc SINE Alu -7 302 1 2191 119 3 0 chr1 238747165 238747460 -3916893 - AluSx SINE Alu -16 296 1 866 97 0 0 chr1 238747470 238747584 -3916769 - AluSg/x SINE Alu -9 301 188 4184 89 5 0 chr1 238747587 238748138 -3916215 - MER41A LTR ERV1 0 554 1 10155 110 66 54 chr1 238748138 238748989 -3915364 - MER41A-int LTR ERV1 -2 5944 5105 226 107 0 125 chr1 238748989 238749045 -3915308 - SN5 Other centromeric -369 86 38 10155 110 66 54 chr1 238749045 238749378 -3914975 - MER41A-int LTR ERV1 -841 5105 4777 2557 60 0 3 chr1 238749378 238749678 -3914675 + AluY SINE Alu 1 299 -12 10155 110 66 54 chr1 238749678 238750097 -3914256 - MER41A-int LTR ERV1 -1169 4777 4364 2382 82 0 3 chr1 238750097 238750401 -3913952 - AluY SINE Alu -8 303 1 10155 110 66 54 chr1 238750401 238750724 -3913629 - MER41A-int LTR ERV1 -1582 4364 4046 2271 115 0 3 chr1 238750724 238751028 -3913325 - AluSx SINE Alu -9 303 1 10155 110 66 54 chr1 238751028 238751252 -3913101 - MER41A-int LTR ERV1 -1900 4046 3037 2319 103 63 32 chr1 238751261 238751721 -3912632 - MER41A-int LTR ERV1 -3922 3894 3450 2449 86 0 0 chr1 238751721 238752023 -3912330 - AluSg SINE Alu -8 302 1 2319 103 63 32 chr1 238752023 238752264 -3912089 - MER41A-int LTR ERV1 -4366 3450 1083 * 4395 94 17 42 chr1 238752254 238752686 -3911667 - MER41A-int LTR ERV1 -5326 620 208 1487 93 29 5 chr1 238752686 238752891 -3911462 - AluSq SINE Alu -7 306 97 4395 94 17 42 chr1 238752891 238753094 -3911259 - MER41A-int LTR ERV1 -5738 208 1 1148 106 0 0 chr1 238753134 238753315 -3911038 - AluSg/x SINE Alu 0 312 136 3832 90 14 34 chr1 238753377 238753791 -3910562 - MER41A LTR ERV1 0 554 152 2365 80 7 3 chr1 238753791 238754090 -3910263 - AluSx SINE Alu -12 300 1 3832 90 14 34 chr1 238754090 238754240 -3910113 - MER41A LTR ERV1 -402 152 1 1215 146 11 0 chr1 238754243 238754428 -3909925 - AluSq SINE Alu -126 187 1 418 129 165 12 chr1 238754592 238754677 -3909676 + MER4A LTR ERV1 1 98 -566 1563 130 169 82 chr1 238754677 238755045 -3909308 + MER4A LTR ERV1 261 660 -4 1167 113 0 0 chr1 238755045 238755205 -3909148 + FRAM SINE Alu 1 40 0 1843 93 0 0 chr1 238755221 238755446 -3908907 + AluSg SINE Alu 10 234 -76 283 226 83 48 chr1 238755462 238755546 -3908807 - L2 LINE L2 -26 3246 3160 1156 218 178 9 chr1 238755622 238755953 -3908400 + MLT1F1 LTR MaLR 176 562 -5 1124 123 12 0 chr1 238756164 238756326 -3908027 + AluSg/x SINE Alu 133 296 -14 681 138 0 0 chr1 238756563 238756672 -3907681 + FLAM_C SINE Alu 2 110 -33 976 109 8 0 chr1 238756759 238756887 -3907466 + AluSq/x SINE Alu 1 129 -184 219 36 0 0 chr1 238756892 238756920 -3907433 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2334 101 0 0 chr1 238757394 238757692 -3906661 + AluSc SINE Alu 1 298 -11 509 275 29 29 chr1 238758073 238758244 -3906109 + MIR SINE MIR 92 262 0 2384 96 0 0 chr1 238758385 238758686 -3905667 - AluSc SINE Alu -8 301 1 1938 134 0 7 chr1 238759193 238759498 -3904855 - AluJb SINE Alu 0 303 1 400 322 90 33 chr1 238759681 238760351 -3904002 - L1 LINE L1 -1488 4658 3951 895 135 0 0 chr1 238760359 238760492 -3903861 - FLAM_C SINE Alu 0 133 1 199 224 17 35 chr1 238760805 238760863 -3903490 - MER5A DNA MER1_type -32 157 101 1926 154 7 3 chr1 238760890 238761182 -3903171 + AluSx SINE Alu 1 293 -19 1049 0 0 0 chr1 238761182 238761297 -3903056 + AluYa5/8 SINE Alu 197 311 0 1582 95 189 8 chr1 238761448 238761691 -3902662 + AluSg1 SINE Alu 1 287 -22 1966 123 3 46 chr1 238762147 238762471 -3901882 + AluSx SINE Alu 1 310 -2 235 327 10 10 chr1 238762818 238762922 -3901431 + MIR3 SINE MIR 82 185 -23 22 35 0 0 chr1 238764699 238764728 -3899625 + AT_rich Low_complexity Low_complexity 1 29 0 2741 26 3 0 chr1 238764821 238765127 -3899226 + AluY SINE Alu 1 307 -4 198 0 0 0 chr1 238765141 238765163 -3899190 + (TAA)n Simple_repeat Simple_repeat 1 22 0 180 267 0 0 chr1 238765608 238765739 -3898614 + (CAGG)n Simple_repeat Simple_repeat 2 132 0 1259 170 94 74 chr1 238766482 238766876 -3897477 - L1MC5 LINE L1 -726 7235 6834 1081 226 52 77 chr1 238766906 238767132 -3897221 + L1MC5 LINE L1 7362 7592 -369 578 173 72 0 chr1 238767132 238767271 -3897082 + L1MB3 LINE L1 6032 6180 -3 1081 226 52 77 chr1 238767271 238767295 -3897058 + L1MC5 LINE L1 7592 7615 -346 1794 180 16 3 chr1 238767295 238767601 -3896752 + AluJo SINE Alu 1 310 -2 1081 226 52 77 chr1 238767601 238767911 -3896442 + L1MC5 LINE L1 7615 7909 -52 514 242 119 57 chr1 238768121 238768315 -3896038 - MIR SINE MIR -31 231 26 822 239 19 5 chr1 238768338 238768543 -3895810 - MIR SINE MIR -21 241 34 333 193 36 0 chr1 238768609 238768692 -3895661 - L2 LINE L2 -1 3271 3186 633 123 132 0 chr1 238768833 238768947 -3895406 + FLAM_A SINE Alu 10 138 -4 2268 104 7 10 chr1 238819061 238819369 -3844984 - AluSx SINE Alu -5 307 1 1102 81 0 0 chr1 238819369 238819505 -3844848 - AluSq/x SINE Alu -176 136 1 2295 73 0 48 chr1 238819686 238820000 -3844353 + AluY SINE Alu 1 299 -12 816 153 0 0 chr1 238820014 238820151 -3844202 + AluSg/x SINE Alu 176 312 0 199 200 0 0 chr1 238820572 238820612 -3843741 + L2 LINE L2 3268 3307 -6 2157 120 3 19 chr1 238821201 238821518 -3842835 - AluSx SINE Alu 0 312 1 1300 196 4 0 chr1 238821786 238822011 -3842342 - AluJo SINE Alu -21 291 66 1577 254 73 69 chr1 238822013 238822618 -3841735 - HAL1 LINE L1 -475 2032 1426 365 246 15 69 chr1 238822618 238822748 -3841605 + MIR SINE MIR 138 260 -2 250 228 325 0 chr1 238823426 238823540 -3840813 + MIR SINE MIR 63 213 -49 2033 125 4 0 chr1 238823573 238823876 -3840477 - AluSx SINE Alu 0 304 1 2238 103 3 7 chr1 238823893 238824193 -3840160 - AluSx SINE Alu -13 299 1 306 217 48 12 chr1 238824345 238824428 -3839925 + L2 LINE L2 3227 3312 -1 200 319 0 0 chr1 238824449 238824518 -3839835 - MIR3 SINE MIR -27 181 113 1751 120 87 4 chr1 238824590 238824856 -3839497 - AluSg SINE Alu -22 288 1 978 227 160 56 chr1 238824891 238825340 -3839013 - MLT1J LTR MaLR -13 498 3 351 188 0 50 chr1 238825341 238825421 -3838932 + Charlie8 DNA MER1_type 81 156 -2261 1820 172 0 7 chr1 238825601 238825891 -3838462 + AluJo SINE Alu 1 288 -24 897 135 54 5 chr1 238826008 238826193 -3838160 - Charlie5 DNA MER1_type -27 2585 2392 2032 125 0 28 chr1 238826193 238826514 -3837839 - AluSx SINE Alu 0 312 1 596 152 0 0 chr1 238826514 238826619 -3837734 - Charlie5 DNA MER1_type -272 2340 2236 647 175 79 0 chr1 238826622 238826736 -3837617 - Charlie5 DNA MER1_type -2487 125 3 254 380 28 7 chr1 238826899 238827041 -3837312 + L2 LINE L2 2933 3077 -195 1127 122 0 0 chr1 238827184 238827332 -3837021 - AluSq/x SINE Alu -164 148 1 302 220 0 0 chr1 238827343 238827402 -3836951 - HsTC2 DNA Tc2 -13 1885 1827 2161 133 123 5 chr1 238827727 238828110 -3836243 + MSTA LTR MaLR 1 428 0 683 206 0 28 chr1 238828126 238828267 -3836086 - FRAM SINE Alu -39 137 1 21 57 0 0 chr1 238828428 238828463 -3835890 + AT_rich Low_complexity Low_complexity 1 35 0 461 192 0 0 chr1 238828895 238828973 -3835380 + FLAM_A SINE Alu 9 86 -56 2104 130 0 7 chr1 238829039 238829338 -3835015 - AluSg SINE Alu -13 297 1 531 199 38 23 chr1 238829339 238829470 -3834883 + L1MC2 LINE L1 6202 6334 -10 2692 30 0 0 chr1 238829750 238830053 -3834300 - AluY SINE Alu -8 303 1 191 192 26 103 chr1 238831004 238831082 -3833271 + L2 LINE L2 3242 3313 0 479 193 163 30 chr1 238831775 238831910 -3832443 - FRAM SINE Alu -30 146 1 2238 107 0 0 chr1 238832033 238832314 -3832039 + AluSx SINE Alu 2 322 0 255 50 25 0 chr1 238832314 238832354 -3831999 + (TAA)n Simple_repeat Simple_repeat 3 180 0 27 0 0 0 chr1 238832682 238832709 -3831644 + AT_rich Low_complexity Low_complexity 1 27 0 391 289 25 0 chr1 238832981 238833102 -3831251 + MIR SINE MIR 119 242 -20 2077 121 0 7 chr1 238833173 238833463 -3830890 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr1 238833463 238833488 -3830865 + AT_rich Low_complexity Low_complexity 1 25 0 1274 155 199 12 chr1 238833550 238833801 -3830552 + AluSg1 SINE Alu 1 298 -11 410 245 32 19 chr1 238833808 238833931 -3830422 - MIR SINE MIR -46 162 35 1618 154 39 32 chr1 238834919 238835234 -3829119 + AluJb SINE Alu 1 317 0 219 274 96 67 chr1 238835239 238835374 -3828979 + MIR SINE MIR 29 167 -95 212 313 67 60 chr1 238835971 238836105 -3828248 - MIR SINE MIR -80 182 48 21 0 0 0 chr1 238836105 238836126 -3828227 + AT_rich Low_complexity Low_complexity 1 21 0 1224 65 0 0 chr1 238836279 238836433 -3827920 + L1PA5 LINE L1 5997 6150 -4 228 232 21 63 chr1 238836845 238836940 -3827413 + L1MC4 LINE L1 6613 6703 -1339 * 281 271 47 0 chr1 238836912 238836997 -3827356 - L1MC4 LINE L1 -1339 6703 6615 2105 126 0 0 chr1 238836997 238837283 -3827070 - AluSg SINE Alu -24 286 1 22 35 0 0 chr1 238837675 238837704 -3826649 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 238837822 238837843 -3826510 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 238837873 238837908 -3826445 + AT_rich Low_complexity Low_complexity 1 35 0 2103 115 11 0 chr1 238837942 238838229 -3826124 - AluSx SINE Alu -22 290 1 1903 153 0 10 chr1 238838576 238838890 -3825463 + AluJb SINE Alu 1 311 -1 292 82 33 33 chr1 238840796 238840857 -3823496 + (CCCCG)n Simple_repeat Simple_repeat 2 62 0 201 230 29 22 chr1 238840832 238840971 -3823382 + CT-rich Low_complexity Low_complexity 3 142 0 * 2568 52 7 0 chr1 238842714 238843019 -3821334 + AluSc SINE Alu 1 307 -2 287 273 81 0 chr1 238843532 238843631 -3820722 + L2 LINE L2 3199 3305 -8 453 156 11 22 chr1 238844825 238844902 -3819451 - AluJ/FRAM SINE Alu -1 311 234 1761 131 7 33 chr1 238844902 238845095 -3819258 - AluJb SINE Alu -44 268 83 2654 58 0 0 chr1 238845095 238845405 -3818948 - AluY SINE Alu -1 310 1 1761 131 7 33 chr1 238845405 238845486 -3818867 - AluJb SINE Alu -229 83 1 453 156 11 22 chr1 238845486 238845498 -3818855 - AluJ/FRAM SINE Alu -78 234 223 358 331 26 13 chr1 238845539 238845693 -3818660 + MIR SINE MIR 28 183 -79 265 228 18 0 chr1 238845689 238845746 -3818607 + L2 LINE L2 3175 3232 -40 * 2151 103 0 4 chr1 238845765 238846071 -3818282 + AluSx SINE Alu 14 318 0 2120 139 0 0 chr1 238846162 238846465 -3817888 + AluSx SINE Alu 1 303 -9 4377 157 11 5 chr1 238846742 238847477 -3816876 + L1MB2 LINE L1 5423 6161 -10 858 156 0 7 chr1 238847578 238847713 -3816640 + AluJb SINE Alu 1 134 -178 703 139 9 0 chr1 238847729 238847844 -3816509 + LTR9B LTR ERV1 445 560 -84 25 0 0 0 chr1 238847844 238847869 -3816484 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr1 238848337 238848374 -3815979 + AT_rich Low_complexity Low_complexity 1 37 0 2296 98 10 0 chr1 238848387 238848683 -3815670 + AluSp SINE Alu 1 299 -14 576 208 0 8 chr1 238848683 238848803 -3815550 - FRAM SINE Alu -30 146 28 335 143 0 0 chr1 238848904 238848960 -3815393 + AluSp/q SINE Alu 248 303 0 2174 115 3 3 chr1 238849034 238849330 -3815023 - AluSx SINE Alu -16 296 1 517 321 42 0 chr1 238849501 238849669 -3814684 - MIR SINE MIR -87 175 1 198 0 0 0 chr1 238849813 238849835 -3814518 + (A)n Simple_repeat Simple_repeat 1 22 0 2190 105 6 35 chr1 238850046 238850360 -3813993 - AluSx SINE Alu -7 305 1 228 316 59 29 chr1 238850453 238850589 -3813764 - L2 LINE L2 -3 3310 3171 1117 140 0 18 chr1 238850786 238850957 -3813396 + FRAM SINE Alu 1 160 -16 396 240 103 52 chr1 238851023 238851114 -3813239 + L1ME4a LINE L1 5712 5797 -324 531 45 11 102 chr1 238851114 238851153 -3813200 + MADE1 DNA Mariner 1 29 -51 2355 113 0 0 chr1 238851153 238851455 -3812898 - AluSx SINE Alu -10 302 1 531 45 11 102 chr1 238851455 238851503 -3812850 + MADE1 DNA Mariner 29 80 0 396 240 103 52 chr1 238851503 238851682 -3812671 + L1ME4a LINE L1 5797 5996 -125 485 191 130 26 chr1 238851718 238851833 -3812520 + MER5A DNA MER1_type 31 157 -32 1613 126 56 30 chr1 238851833 238852103 -3812250 - AluSq SINE Alu -7 306 30 1980 217 170 49 chr1 238852107 238852319 -3812034 - L1MCb LINE L1 -4951 1094 909 1467 133 5 0 chr1 238852319 238852530 -3811823 - AluSx SINE Alu -100 212 1 1980 217 170 49 chr1 238852530 238853293 -3811060 - L1MCb LINE L1 -5136 909 190 578 291 6 0 chr1 238853338 238853503 -3810850 + MIR SINE MIR 94 259 -3 2073 108 0 4 chr1 238853734 238854011 -3810342 - AluSx SINE Alu -36 276 1 265 217 14 14 chr1 238854159 238854228 -3810125 + L2 LINE L2 2291 2359 -955 402 208 10 10 chr1 238854655 238854756 -3809597 + AluSg1 SINE Alu 1 101 -208 2168 131 3 0 chr1 238854894 238855257 -3809096 - AluSq SINE Alu 0 364 1 186 43 0 0 chr1 238855587 238855610 -3808743 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1899 133 25 0 chr1 238855615 238855893 -3808460 - AluSx SINE Alu -27 285 1 693 125 37 81 chr1 238856166 238856302 -3808051 + AluJo SINE Alu 5 134 -178 2343 113 0 0 chr1 238856323 238856624 -3807729 + AluSx SINE Alu 1 301 -11 2450 96 0 0 chr1 238856745 238857057 -3807296 + AluSx SINE Alu 1 312 0 1304 115 0 0 chr1 238857455 238857629 -3806724 - AluSc SINE Alu -4 305 132 2296 103 0 3 chr1 238857629 238857931 -3806422 - AluSg SINE Alu -7 303 3 182 422 55 8 chr1 238858124 238858252 -3806101 - L2 LINE L2 -23 3249 3116 535 188 100 56 chr1 238858321 238858398 -3805955 + MER104 DNA Tc2 1 73 -1825 1830 157 7 7 chr1 238858398 238858707 -3805646 - AluJb SINE Alu 0 309 1 535 188 100 56 chr1 238858707 238858787 -3805566 + MER104 DNA Tc2 73 167 -13 1152 145 0 0 chr1 238858798 238858957 -3805396 + AluSx SINE Alu 1 159 -153 326 145 0 0 chr1 238858958 238859021 -3805332 - Alu SINE Alu -254 48 1 632 192 138 6 chr1 238859244 238859411 -3804942 + MIR SINE MIR 13 201 -61 1019 100 14 0 chr1 238859687 238859827 -3804526 - AluSg/x SINE Alu -14 296 155 583 176 0 0 chr1 238859828 238859919 -3804434 + AluSg/x SINE Alu 210 300 -10 2719 128 2 7 chr1 238859919 238860333 -3804020 + L1PA16 LINE L1 5599 6010 -156 953 166 6 0 chr1 238860364 238860527 -3803826 + L1PA16 LINE L1 5994 6157 -9 2429 90 3 0 chr1 238860839 238861150 -3803203 - AluSx SINE Alu 0 312 1 1280 80 25 171 chr1 238861157 238861319 -3803034 - L1P4 LINE L1 -563 5603 5499 2291 93 3 0 chr1 238861319 238861608 -3802745 + AluSc SINE Alu 6 295 -14 1280 80 25 171 chr1 238861608 238861731 -3802622 - L1P4 LINE L1 -667 5499 5360 207 0 0 0 chr1 238861929 238861952 -3802401 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 21 0 0 0 chr1 238861952 238861973 -3802380 + AT_rich Low_complexity Low_complexity 1 21 0 1230 229 12 17 chr1 238861973 238862213 -3802140 - AluSc SINE Alu -28 281 43 246 289 7 28 chr1 238862408 238862550 -3801803 + CT-rich Low_complexity Low_complexity 2 140 0 1228 69 0 0 chr1 238862660 238862805 -3801548 - AluSc SINE Alu -164 145 1 619 147 103 9 chr1 238863318 238863434 -3800919 - FLAM_A SINE Alu -6 127 1 2125 107 0 7 chr1 238863607 238863898 -3800455 + AluSx SINE Alu 1 289 -23 378 0 0 0 chr1 238863907 238863949 -3800404 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 692 149 42 71 chr1 238864465 238864492 -3799861 - MER33 DNA MER1_type -2394 191 165 1703 176 3 0 chr1 238864492 238864776 -3799577 + AluJb SINE Alu 1 285 -27 246 32 0 0 chr1 238864776 238864807 -3799546 + (CA)n Simple_repeat Simple_repeat 2 32 0 692 149 42 71 chr1 238864807 238864946 -3799407 - MER33 DNA MER1_type -2418 167 29 1320 102 0 6 chr1 238865076 238865252 -3799101 + AluSp SINE Alu 123 297 -16 1698 135 9 94 chr1 238865267 238865433 -3798920 + AluSx SINE Alu 1 129 -183 2348 73 3 13 chr1 238865433 238865733 -3798620 + AluY SINE Alu 1 297 -14 1698 135 9 94 chr1 238865733 238865885 -3798468 + AluSx SINE Alu 129 292 -20 296 211 84 0 chr1 238865924 238865995 -3798358 - Zaphod DNA AcHobo -3954 77 1 332 317 70 7 chr1 238865999 238866141 -3798212 + MLT1K LTR MaLR 435 585 -3 198 0 0 0 chr1 238866473 238866495 -3797858 + (T)n Simple_repeat Simple_repeat 1 22 0 1808 193 8 23 chr1 238866513 238866602 -3797751 + L1 LINE L1 4330 4419 -1727 2145 100 31 0 chr1 238866602 238866892 -3797461 + AluSq SINE Alu 1 299 -14 1808 193 8 23 chr1 238866892 238867186 -3797167 + L1 LINE L1 4419 4707 -1439 335 173 0 0 chr1 238867931 238867983 -3796370 - AluS SINE Alu -225 78 27 1901 165 0 0 chr1 238868056 238868375 -3795978 + AluJb SINE Alu 1 319 0 805 277 92 44 chr1 238868575 238869077 -3795276 + L1MC4 LINE L1 7507 8032 -10 1707 166 6 35 chr1 238869287 238869601 -3794752 + AluJo SINE Alu 1 305 -7 27 92 0 0 chr1 238869683 238869759 -3794594 + AT_rich Low_complexity Low_complexity 1 76 0 1535 148 35 76 chr1 238870075 238870392 -3793961 - AluJo SINE Alu -8 304 1 2363 97 6 3 chr1 238870428 238870739 -3793614 - AluSx SINE Alu 0 312 1 430 303 65 35 chr1 238870809 238871070 -3793283 - L2 LINE L2 -356 2958 2690 1224 121 12 0 chr1 238871072 238871245 -3793108 + FAM SINE Alu 1 175 0 2220 104 0 13 chr1 238871682 238871981 -3792372 - AluSx SINE Alu -9 303 9 636 135 0 29 chr1 238872667 238872771 -3791582 - FLAM_A SINE Alu -12 130 30 21 36 0 0 chr1 238872852 238872880 -3791473 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 238872964 238872990 -3791363 + AT_rich Low_complexity Low_complexity 1 26 0 405 278 37 68 chr1 238873316 238873507 -3790846 - MIR SINE MIR -76 186 2 882 164 0 0 chr1 238873579 238873713 -3790640 - AluJo SINE Alu -178 134 1 2571 138 149 129 chr1 238873731 238874142 -3790211 - L1MC3 LINE L1 -169 7616 7215 289 235 12 25 chr1 238874142 238874223 -3790130 - MLT1F1 LTR MaLR -446 121 42 2571 138 149 129 chr1 238874223 238874295 -3790058 - L1MC3 LINE L1 -570 7215 7146 3686 166 63 5 chr1 238874295 238874957 -3789396 + MER44D DNA MER2_type 5 705 0 2571 138 149 129 chr1 238874957 238875141 -3789212 - L1MC3 LINE L1 -639 7146 6853 766 181 81 25 chr1 238875144 238875304 -3789049 - AluSg/x SINE Alu -23 287 119 207 69 0 0 chr1 238875311 238875340 -3789013 + (CTA)n Simple_repeat Simple_repeat 1 29 0 1742 243 66 68 chr1 238875359 238875963 -3788390 - MER21B LTR ERV1 -60 803 201 249 186 93 58 chr1 238876041 238876127 -3788226 - MIR SINE MIR -15 247 159 2147 125 0 22 chr1 238876941 238877260 -3787093 + AluSx SINE Alu 1 312 0 531 194 116 16 chr1 238877278 238877407 -3786946 - MLT1F LTR MaLR 0 567 426 1290 243 3 61 chr1 238877414 238877756 -3786597 - MLT1F LTR MaLR -220 322 1 425 224 51 128 chr1 238877756 238878068 -3786285 - MLT1F-int LTR MaLR 0 1371 1084 1841 174 69 6 chr1 238878070 238878431 -3785922 - MSTD LTR MaLR 0 396 13 283 319 84 42 chr1 238878732 238878898 -3785455 - MLT1F-int LTR MaLR -507 864 692 1455 200 38 7 chr1 238878910 238879200 -3785153 - AluJo SINE Alu -9 303 5 522 305 62 5 chr1 238879206 238879416 -3784937 - MLT1F-int LTR MaLR -859 512 291 300 186 0 0 chr1 238879450 238879509 -3784844 - MLT1F-int LTR MaLR -1307 64 6 1508 221 168 20 chr1 238879539 238879992 -3784361 - MLT1F LTR MaLR -2 540 21 261 200 73 0 chr1 238879994 238880049 -3784304 - MLT1F LTR MaLR -483 59 1 1952 134 81 6 chr1 238880411 238880731 -3783622 + MER2 DNA MER2_type 1 344 0 219 254 0 0 chr1 238881361 238881416 -3782937 + L2 LINE L2 3249 3303 -10 1012 163 0 0 chr1 238881419 238881601 -3782752 + FRAM SINE Alu 1 182 0 2003 175 136 5 chr1 238882728 238883140 -3781213 - L1MB3 LINE L1 -25 6158 5693 2266 113 0 3 chr1 238883253 238883564 -3780789 - AluSq SINE Alu -3 310 1 353 346 105 18 chr1 238883565 238883897 -3780456 + L2 LINE L2 533 893 -2421 1868 164 10 16 chr1 238883923 238884233 -3780120 - AluJo SINE Alu -4 308 1 449 244 17 0 chr1 238884330 238884449 -3779904 - LTR67 LTR ERVL -35 522 402 450 338 31 0 chr1 238884528 238884688 -3779665 - LTR67 LTR ERVL -296 261 97 219 69 0 0 chr1 238884781 238884810 -3779543 + (A)n Simple_repeat Simple_repeat 1 29 0 218 193 18 0 chr1 238884813 238884870 -3779483 + GA-rich Low_complexity Low_complexity 2 59 0 289 326 62 66 chr1 238884973 238885231 -3779122 + L2 LINE L2 1360 1616 -1698 1749 105 18 42 chr1 238885391 238885518 -3778835 - Tigger7 DNA MER2_type -1 2586 2457 2275 103 0 22 chr1 238885518 238885837 -3778516 - AluSx SINE Alu 0 312 1 1749 105 18 42 chr1 238885837 238885994 -3778359 - Tigger7 DNA MER2_type -130 2457 2309 1036 173 18 0 chr1 238885998 238886166 -3778187 - Tigger7 DNA MER2_type -2316 171 1 2182 112 3 3 chr1 238886218 238886514 -3777839 + AluY SINE Alu 1 296 -15 272 180 20 0 chr1 238886522 238886572 -3777781 + L2 LINE L2 3262 3312 -1 406 301 37 88 chr1 238886805 238887077 -3777276 - MIR SINE MIR -2 260 3 360 290 49 49 chr1 238887085 238887247 -3777106 - MER5A DNA MER1_type -2 187 26 241 272 72 56 chr1 238887778 238887903 -3776450 - L2 LINE L2 -2 3311 3185 1173 181 28 5 chr1 238888236 238888451 -3775902 - AluJb SINE Alu -5 307 88 23 54 0 0 chr1 238888471 238888508 -3775845 + AT_rich Low_complexity Low_complexity 1 37 0 2956 175 43 4 chr1 238888581 238889118 -3775235 - L1MB3 LINE L1 -87 6096 5539 567 139 120 0 chr1 238889123 238889231 -3775122 - MIR SINE MIR -127 135 15 1800 142 0 47 chr1 238889318 238889614 -3774739 - AluJo SINE Alu -22 290 9 594 180 99 0 chr1 238889617 238889728 -3774625 - FLAM_A SINE Alu -11 131 10 731 218 0 0 chr1 238889799 238889932 -3774421 - FLAM_A SINE Alu 0 133 1 740 162 111 0 chr1 238890142 238890259 -3774094 - FLAM_A SINE Alu -2 131 2 1341 191 48 107 chr1 238890478 238890585 -3773768 - L1MB3 LINE L1 -2104 4042 3930 592 136 0 0 chr1 238890585 238890673 -3773680 - L1MA5 LINE L1 -5 6295 6208 1341 191 48 107 chr1 238890673 238891061 -3773292 - L1MB3 LINE L1 -2216 3930 3576 2021 118 28 3 chr1 238891074 238891361 -3772992 - AluSx SINE Alu -18 294 1 216 304 139 0 chr1 238891510 238891625 -3772728 - L2 LINE L2 -188 3084 2954 274 326 45 81 chr1 238891744 238892022 -3772331 - L2 LINE L2 -456 2858 2590 1682 129 43 16 chr1 238892022 238892300 -3772053 - AluSx SINE Alu 0 307 23 274 326 45 81 chr1 238892300 238892330 -3772023 - L2 LINE L2 -724 2590 2560 1880 165 0 0 chr1 238892369 238892688 -3771665 + AluJb SINE Alu 1 319 0 830 281 90 42 chr1 238892888 238893390 -3770963 + L1MC4 LINE L1 7507 8032 -10 1691 166 6 35 chr1 238893600 238893914 -3770439 + AluJo SINE Alu 1 305 -7 27 92 0 0 chr1 238893996 238894072 -3770281 + AT_rich Low_complexity Low_complexity 1 76 0 1519 148 35 76 chr1 238894388 238894705 -3769648 - AluJo SINE Alu -8 304 1 2479 71 7 3 chr1 238894741 238895050 -3769303 - AluSg SINE Alu 0 310 1 2387 78 0 0 chr1 238895188 238895484 -3768869 - AluY SINE Alu -15 296 1 2230 107 0 19 chr1 238895570 238895878 -3768475 - AluSx SINE Alu -10 302 1 2556 71 0 0 chr1 238896389 238896698 -3767655 - AluY SINE Alu -2 309 1 3627 116 25 9 chr1 238896698 238897249 -3767104 - Tigger4(Zombi) DNA MER2_type -4 2727 2168 353 160 15 5 chr1 238897249 238897349 -3767004 - Tigger4(Zombi) DNA MER2_type 0 2731 1 458 235 39 0 chr1 238897451 238897553 -3766800 + MER103 DNA DNA 4 109 -57 597 139 0 0 chr1 238897651 238897737 -3766616 + AluSg SINE Alu 2 87 -223 34 0 0 0 chr1 238898038 238898072 -3766281 + AT_rich Low_complexity Low_complexity 1 34 0 324 254 14 0 chr1 238899097 238899168 -3765185 + U4 snRNA snRNA 1 72 -73 391 274 69 23 chr1 238899216 238899428 -3764925 + L1ME3 LINE L1 5667 5883 -238 2216 131 0 3 chr1 238899465 238899778 -3764575 + AluSx SINE Alu 1 312 0 277 305 23 41 chr1 238899985 238900190 -3764163 + L1ME4a LINE L1 5277 5474 -708 267 103 0 0 chr1 238900353 238900392 -3763961 + (GGGTG)n Simple_repeat Simple_repeat 1 39 0 439 220 25 34 chr1 238900392 238900510 -3763843 + MIR3 SINE MIR 14 130 -78 242 352 0 0 chr1 238900531 238900602 -3763751 + L2 LINE L2 3202 3272 0 332 228 73 16 chr1 238900606 238900729 -3763624 + L1ME4a LINE L1 5925 6054 -67 849 194 44 6 chr1 238900838 238900998 -3763355 - AluJb SINE Alu -16 296 131 1442 217 93 74 chr1 238901021 238901146 -3763207 + L2 LINE L2 2420 2541 -772 2402 81 0 7 chr1 238901146 238901453 -3762900 + AluSc SINE Alu 2 306 -3 1442 217 93 74 chr1 238901453 238901682 -3762671 + L2 LINE L2 2541 2764 -549 2287 92 3 25 chr1 238901682 238901997 -3762356 - AluSq SINE Alu -5 308 1 1442 217 93 74 chr1 238901997 238902393 -3761960 + L2 LINE L2 2764 3273 -40 484 207 15 59 chr1 238902638 238902773 -3761580 + L1ME3 LINE L1 6034 6162 0 254 200 0 0 chr1 238903323 238903373 -3760980 + L2 LINE L2 3263 3312 -1 2310 112 0 0 chr1 238903661 238903964 -3760389 + AluSx SINE Alu 1 303 -9 935 140 112 28 chr1 238905123 238905301 -3759052 - AluJo SINE Alu -31 281 89 1218 133 4 98 chr1 238905402 238905636 -3758717 + AluSg/x SINE Alu 89 300 -12 229 189 216 0 chr1 238906022 238906096 -3758257 + MIR SINE MIR 32 121 -141 1982 161 33 94 chr1 238906144 238906263 -3758090 + Charlie1b DNA MER1_type 34 159 -2602 2413 81 0 31 chr1 238906263 238906583 -3757770 - AluSx SINE Alu -2 310 1 1982 161 33 94 chr1 238906583 238906984 -3757369 + Charlie1b DNA MER1_type 159 522 -1 1957 159 0 0 chr1 238907088 238907389 -3756964 - AluSx SINE Alu -11 301 1 726 176 50 0 chr1 238907502 238907621 -3756732 - FLAM_A SINE Alu -8 125 1 1984 115 6 57 chr1 238907803 238908117 -3756236 - AluSx SINE Alu -14 298 1 252 200 0 0 chr1 238908343 238908398 -3755955 + (TG)n Simple_repeat Simple_repeat 2 56 0 4522 146 40 73 chr1 238908399 238908668 -3755685 - L1MB3 LINE L1 -2 6181 5905 780 98 29 0 chr1 238908668 238908770 -3755583 + U6 snRNA snRNA 1 105 -2 4522 146 40 73 chr1 238908770 238909434 -3754919 - L1MB3 LINE L1 -278 5905 5279 459 237 160 12 chr1 238909441 238909541 -3754812 - L1MC4a LINE L1 -1875 5933 5849 2323 88 0 3 chr1 238909541 238909836 -3754517 + AluSx SINE Alu 1 294 -18 459 237 160 12 chr1 238909836 238909904 -3754449 - L1MC4a LINE L1 -1959 5849 5740 219 239 239 11 chr1 238910988 238911076 -3753277 + MIR SINE MIR 84 191 -71 1211 209 18 0 chr1 238911582 238911802 -3752551 + MER58A DNA MER1_type 1 224 0 413 303 99 0 chr1 238911841 238911993 -3752360 + MIR SINE MIR 32 198 -64 2028 158 0 0 chr1 238912572 238912876 -3751477 + AluSx SINE Alu 1 304 -8 2389 64 3 3 chr1 238913083 238913380 -3750973 + AluY SINE Alu 1 297 -14 924 181 0 0 chr1 238913383 238913532 -3750821 + AluSg/x SINE Alu 144 292 -20 289 211 84 0 chr1 238913571 238913642 -3750711 - Zaphod DNA AcHobo -3954 77 1 336 317 70 7 chr1 238913646 238913788 -3750565 + MLT1K LTR MaLR 435 585 -3 198 0 0 0 chr1 238914120 238914142 -3750211 + (T)n Simple_repeat Simple_repeat 1 22 0 3145 229 40 20 chr1 238914160 238914249 -3750104 + L1 LINE L1 4330 4416 -1730 2128 100 31 0 chr1 238914249 238914539 -3749814 + AluSq SINE Alu 1 299 -14 3145 229 40 20 chr1 238914539 238915229 -3749124 + L1 LINE L1 4416 5124 -1022 939 136 5 127 chr1 238915234 238915454 -3748899 + 7SK RNA RNA 1 193 0 492 99 0 0 chr1 238915547 238915618 -3748735 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 828 204 0 77 chr1 238915618 238915839 -3748514 + L1 LINE L1 5127 5330 -816 692 241 0 8 chr1 238915842 238915975 -3748378 + FLAM_A SINE Alu 2 133 0 3911 168 65 32 chr1 238915982 238916767 -3747586 + L1MB2 LINE L1 5263 6073 -98 253 29 0 0 chr1 238916767 238916801 -3747552 + AluSp/q SINE Alu 261 294 -9 2138 119 3 7 chr1 238917013 238917323 -3747030 - AluSg SINE Alu -1 309 1 2009 112 4 0 chr1 238917359 238917635 -3746718 - AluSx SINE Alu -14 298 22 361 256 0 12 chr1 238917681 238917767 -3746586 - MLT1E LTR MaLR -508 85 1 284 93 0 0 chr1 238918225 238918268 -3746085 - L1MA3 LINE L1 0 6305 6263 464 245 95 0 chr1 238918325 238918472 -3745881 - L1MC5 LINE L1 -525 7436 7276 6198 156 25 39 chr1 238918823 238920045 -3744308 + L1 LINE L1 4096 5301 -845 2160 117 0 0 chr1 238920048 238920378 -3743975 + AluSx SINE Alu 1 330 0 431 286 113 34 chr1 238920474 238920712 -3743641 - L3 LINE CR1 -915 662 406 483 254 55 13 chr1 238920752 238920933 -3743420 + MIR SINE MIR 30 218 -44 2235 74 4 0 chr1 238921599 238921907 -3742446 - AluSg SINE Alu 0 318 10 204 40 0 0 chr1 238922259 238922284 -3742069 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2120 126 0 0 chr1 238922285 238922570 -3741783 - AluSx SINE Alu -27 285 1 2152 132 0 0 chr1 238922784 238923079 -3741274 + AluJo SINE Alu 1 295 -17 1029 168 15 35 chr1 238923079 238923282 -3741071 - AluJo SINE Alu -113 199 1 1812 170 3 10 chr1 238923420 238923904 -3740449 + AluJb SINE Alu 1 482 0 618 254 31 47 chr1 238924803 238924996 -3739357 - MIR SINE MIR -26 236 47 212 316 20 20 chr1 238925090 238925188 -3739165 + MIR SINE MIR 159 256 -6 211 204 0 41 chr1 238925525 238925574 -3738779 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 527 158 0 0 chr1 238926218 238926300 -3738053 + U6 snRNA snRNA 26 107 0 1074 61 8 0 chr1 238926315 238926447 -3737906 + AluSq/x SINE Alu 1 133 -179 2325 85 0 16 chr1 238926450 238926755 -3737598 + AluSx SINE Alu 1 300 -12 333 314 224 9 chr1 238926906 238927116 -3737237 + MIR SINE MIR 6 260 -2 2352 113 0 0 chr1 238927735 238928046 -3736307 + AluSp SINE Alu 1 311 -2 892 118 0 22 chr1 238928123 238928258 -3736095 + FLAM_C SINE Alu 2 133 0 590 287 116 27 chr1 238928733 238929021 -3735332 - L1MC/D LINE L1 -2065 5743 5405 2262 114 13 0 chr1 238929021 238929329 -3735024 - AluSx SINE Alu 0 312 1 590 287 116 27 chr1 238929329 238929454 -3734899 - L1MC/D LINE L1 -2403 5405 5293 316 298 21 69 chr1 238929565 238929753 -3734600 - MARNA DNA Mariner -237 349 171 2420 117 39 25 chr1 238930163 238930522 -3733831 + THE1B LTR MaLR 1 364 0 303 282 94 45 chr1 238931109 238931311 -3733042 + L1ME3A LINE L1 5741 5952 -218 22 0 0 0 chr1 238931562 238931584 -3732769 + AT_rich Low_complexity Low_complexity 1 22 0 258 294 101 0 chr1 238931706 238931815 -3732538 - HAL1b LINE L1 -71 1277 1158 216 265 0 0 chr1 238931823 238931872 -3732481 + GA-rich Low_complexity Low_complexity 2 50 0 1198 245 106 28 chr1 238931908 238932387 -3731966 - HAL1b LINE L1 -251 1097 570 1766 151 11 0 chr1 238932387 238932671 -3731682 - AluJo SINE Alu -25 287 1 1198 245 106 28 chr1 238932671 238932730 -3731623 - HAL1b LINE L1 -778 570 517 236 321 38 0 chr1 238932743 238932849 -3731504 - L1ME LINE L1 -298 5823 5714 2171 108 0 7 chr1 238933787 238934082 -3730271 - AluSx SINE Alu -19 293 1 2192 126 0 0 chr1 238934085 238934379 -3729974 - AluSx SINE Alu -18 294 1 611 130 0 0 chr1 238934856 238934948 -3729405 - MER2 DNA MER2_type -181 164 73 1022 228 94 82 chr1 238935724 238936162 -3728191 + MLT1J2 LTR MaLR 1 443 -7 725 177 73 0 chr1 238937359 238937483 -3726870 + FLAM_A SINE Alu 1 133 0 2200 113 23 0 chr1 238938162 238938503 -3725850 - AluSx SINE Alu 0 349 2 532 293 127 45 chr1 238938756 238938802 -3725551 + L1M4 LINE L1 2897 2938 -3208 2318 123 0 0 chr1 238938802 238939112 -3725241 + AluSx SINE Alu 1 310 -2 532 293 127 45 chr1 238939112 238939556 -3724797 + L1M4 LINE L1 2938 3430 -2716 4144 201 51 27 chr1 238939566 238940067 -3724286 + L1MC4 LINE L1 4517 4427 -1719 2296 107 0 22 chr1 238940067 238940384 -3723969 + AluSx SINE Alu 1 310 -2 4144 201 51 27 chr1 238940384 238941386 -3722967 + L1MC4 LINE L1 4426 5403 -743 3316 174 24 0 chr1 238940875 238941456 -3722897 + L1MB7 LINE L1 5536 6130 -54 * 1282 300 120 38 chr1 238941479 238942680 -3721673 + L1M4 LINE L1 3427 4765 -1381 2381 79 0 0 chr1 238942680 238942971 -3721382 + AluY SINE Alu 1 291 -20 1282 300 120 38 chr1 238942971 238943204 -3721149 + L1M4 LINE L1 4765 4978 -1168 30 27 0 0 chr1 238943338 238943375 -3720978 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 238943475 238943496 -3720857 + AT_rich Low_complexity Low_complexity 1 21 0 653 176 38 15 chr1 238943578 238943709 -3720644 + L1M2 LINE L1 5686 5819 -472 1003 194 9 50 chr1 238943760 238943982 -3720371 + AluJo SINE Alu 85 297 -15 2539 231 63 9 chr1 238943983 238944632 -3719721 - L1MC4a LINE L1 -51 7757 7074 348 341 88 16 chr1 238944922 238945104 -3719249 + MIR SINE MIR 17 211 -51 892 136 0 0 chr1 238945159 238945284 -3719069 + FLAM_C SINE Alu 3 127 -6 778 257 99 89 chr1 238945293 238946058 -3718295 - L2 LINE L2 0 3313 2552 1966 140 14 124 chr1 238946070 238946506 -3717847 + MLT1B LTR MaLR 1 388 -2 319 247 108 57 chr1 238946536 238946694 -3717659 + L2 LINE L2 3119 3284 -29 319 206 196 0 chr1 238947025 238947117 -3717236 + L2 LINE L2 3203 3312 -1 2362 109 0 3 chr1 238947647 238947960 -3716393 + AluSx SINE Alu 1 312 0 1042 155 47 188 chr1 238948277 238948425 -3715928 - MER63 DNA MER1_type 0 1062 895 567 200 19 0 chr1 238948425 238948530 -3715823 + U6 snRNA snRNA 1 107 0 1042 155 47 188 chr1 238948530 238948833 -3715520 - MER63 DNA MER1_type -167 895 675 349 82 0 0 chr1 238948999 238949048 -3715305 - Alu SINE Alu -3 298 250 270 56 0 0 chr1 238949048 238949084 -3715269 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1699 92 36 111 chr1 238949084 238949390 -3714963 - AluSx SINE Alu -29 283 1 27 49 0 0 chr1 238949431 238949472 -3714881 + AT_rich Low_complexity Low_complexity 1 41 0 1507 199 3 10 chr1 238949503 238949794 -3714559 - AluJb SINE Alu -18 294 6 2318 151 62 42 chr1 238949818 238950502 -3713851 - MER51A LTR ERV1 -9 625 1 2063 173 40 63 chr1 238951586 238951813 -3712540 - Tigger2a DNA MER2_type -2274 434 203 2245 122 0 0 chr1 238951813 238952124 -3712229 + AluSx SINE Alu 1 311 -1 2063 173 40 63 chr1 238952124 238952150 -3712203 - Tigger2a DNA MER2_type -2505 203 178 1949 143 6 35 chr1 238952150 238952464 -3711889 + AluSx SINE Alu 6 310 -2 2063 173 40 63 chr1 238952464 238952653 -3711700 - Tigger2a DNA MER2_type -2530 178 1 31 26 0 0 chr1 238952974 238953012 -3711341 + AT_rich Low_complexity Low_complexity 1 38 0 258 265 29 0 chr1 238953210 238953278 -3711075 - L1MC4 LINE L1 -144 7898 7829 602 197 0 60 chr1 238953279 238953418 -3710935 - FLAM_A SINE Alu 0 140 9 2129 145 3 0 chr1 238953432 238953743 -3710610 - AluSx SINE Alu 0 312 1 267 143 20 20 chr1 238953743 238953792 -3710561 - L1MC4 LINE L1 -203 7839 7791 672 236 27 87 chr1 238954235 238954474 -3709879 + MIR SINE MIR 10 237 -25 214 288 0 0 chr1 238954658 238954717 -3709636 + T-rich Low_complexity Low_complexity 1 59 0 932 111 0 7 chr1 238954723 238954858 -3709495 - AluSq/x SINE Alu -178 134 1 732 219 26 17 chr1 238954935 238955116 -3709237 + MIR SINE MIR 59 241 -21 1207 152 54 15 chr1 238955337 238955541 -3708812 - AluJb SINE Alu -13 299 88 1657 161 15 8 chr1 238955579 238955846 -3708507 + AluJo SINE Alu 14 282 -30 21 0 0 0 chr1 238956698 238956719 -3707634 + AT_rich Low_complexity Low_complexity 1 21 0 197 364 0 10 chr1 238957306 238957405 -3706948 + L2 LINE L2 1355 1452 -1862 900 211 111 5 chr1 238957565 238957755 -3706598 + MER6B DNA MER2_type 1 210 0 193 309 58 36 chr1 238957904 238958043 -3706310 - L2 LINE L2 -1746 1568 1427 217 250 61 76 chr1 238958468 238958600 -3705753 + L2 LINE L2 1639 1768 -1546 693 180 0 136 chr1 238958605 238958811 -3705542 - AluSq SINE Alu 0 313 136 527 311 122 16 chr1 238958811 238959245 -3705108 + L2 LINE L2 1805 2284 -1030 1432 171 87 103 chr1 238959248 238959686 -3704667 - LTR40c LTR ERVL 0 465 35 28 0 0 0 chr1 238959745 238959773 -3704580 + AT_rich Low_complexity Low_complexity 1 28 0 1812 157 0 10 chr1 238959788 238960082 -3704271 - AluJo SINE Alu -21 291 1 798 175 15 0 chr1 238960366 238960503 -3703850 - FAM SINE Alu -22 163 25 1014 85 0 0 chr1 238960763 238960892 -3703461 - AluSg/x SINE Alu -20 292 164 1623 130 186 48 chr1 238961092 238961116 -3703237 - MER57A LTR ERV1 0 403 384 2481 84 0 3 chr1 238961116 238961426 -3702927 + AluSc SINE Alu 1 309 0 1623 130 186 48 chr1 238961426 238961744 -3702609 - MER57A LTR ERV1 -19 384 8 496 70 113 0 chr1 238961744 238961815 -3702538 + MADE1 DNA Mariner 2 80 0 1335 170 9 5 chr1 238961825 238962072 -3702281 - MER33 DNA MER1_type -85 239 1 2147 136 35 35 chr1 238962110 238962514 -3701839 - L1MA4 LINE L1 0 6300 5897 921 163 0 76 chr1 238962559 238962709 -3701644 + AluJb SINE Alu 133 268 -44 201 39 0 0 chr1 238962709 238962735 -3701618 + (TAA)n Simple_repeat Simple_repeat 1 26 0 921 163 0 76 chr1 238962735 238962768 -3701585 + AluJb SINE Alu 268 302 -10 384 200 40 0 chr1 238963406 238963481 -3700872 - MIR SINE MIR -182 80 3 * 439 224 78 0 chr1 238963481 238963594 -3700759 - MIR SINE MIR -72 190 69 219 239 239 11 chr1 238964707 238964795 -3699558 + MIR SINE MIR 84 191 -71 1211 209 18 0 chr1 238965301 238965521 -3698832 + MER58A DNA MER1_type 1 224 0 413 303 99 0 chr1 238965560 238965712 -3698641 + MIR SINE MIR 32 198 -64 2028 158 0 0 chr1 238966291 238966595 -3697758 + AluSx SINE Alu 1 304 -8 1615 295 75 33 chr1 238967114 238967989 -3696364 - HERV16 LTR ERVL -3240 1756 780 263 308 196 0 chr1 238967992 238968099 -3696254 - LTR16B LTR ERVL -322 142 15 469 184 112 0 chr1 238968101 238968199 -3696154 + FRAM SINE Alu 38 146 -30 2323 76 0 3 chr1 238968199 238968490 -3695863 - AluSx SINE Alu -22 290 1 1251 247 120 62 chr1 238968903 238969559 -3694794 - HAL1 LINE L1 -644 1863 1170 499 76 0 15 chr1 238969562 238969628 -3694725 - AluSq/x SINE Alu -180 133 69 1289 129 52 0 chr1 238969628 238969821 -3694532 - AluSx SINE Alu -109 203 1 1115 175 127 9 chr1 238969821 238970152 -3694201 - HAL1 LINE L1 -1309 1198 829 1162 268 156 16 chr1 238970309 238970738 -3693615 - HAL1 LINE L1 -2017 490 2 2459 71 0 0 chr1 238971094 238971390 -3692963 + AluY SINE Alu 1 296 -15 376 265 68 15 chr1 238971455 238971587 -3692766 + L2 LINE L2 2486 2624 -690 1070 108 0 38 chr1 238971608 238971765 -3692588 - AluSg/x SINE Alu -25 287 137 1775 168 0 0 chr1 238972917 238973197 -3691156 - AluJo SINE Alu -18 294 15 1416 184 68 29 chr1 238973485 238973559 -3690794 + L1MB2 LINE L1 5809 5879 -292 2702 145 18 21 chr1 238973559 238973994 -3690359 - Tigger2a DNA MER2_type 0 434 1 1416 184 68 29 chr1 238973994 238974229 -3690124 + L1MB2 LINE L1 5879 6130 -41 1705 183 0 10 chr1 238974229 238974529 -3689824 + AluJo SINE Alu 1 297 -15 848 168 0 0 chr1 238974533 238974664 -3689689 - MER2 DNA MER2_type -209 136 6 269 226 108 10 chr1 238974775 238974877 -3689476 - L1M4 LINE L1 -373 5805 5694 1458 202 18 110 chr1 238975212 238975613 -3688740 + MLT1A1 LTR MaLR 1 364 -1 2137 195 39 19 chr1 238975627 238976088 -3688265 + MLT1A1-int LTR MaLR 17 486 -1249 477 282 67 37 chr1 238976062 238976368 -3687985 + L1ME4a LINE L1 5518 5834 -287 * 2222 144 94 0 chr1 238976370 238976753 -3687600 + L1MC1 LINE L1 5441 5859 -474 269 73 0 0 chr1 238976754 238976795 -3687558 - AluJb SINE Alu 0 302 262 1139 171 19 19 chr1 238976796 238977006 -3687347 - AluJb SINE Alu -102 210 1 1430 139 6 111 chr1 238977007 238977111 -3687242 + L1MC1 LINE L1 6018 6131 -202 2673 153 19 16 chr1 238977111 238977535 -3686818 + MSTB LTR MaLR 2 426 0 1430 139 6 111 chr1 238977535 238977601 -3686752 + L1MC1 LINE L1 6131 6202 -131 2293 112 0 0 chr1 238977601 238977905 -3686448 - AluSx SINE Alu -8 304 1 1430 139 6 111 chr1 238977905 238978086 -3686267 + L1MC1 LINE L1 6202 6333 0 236 170 19 19 chr1 238978162 238978215 -3686138 + (TA)n Simple_repeat Simple_repeat 1 53 0 297 244 84 59 chr1 238978267 238978386 -3685967 + L1ME4a LINE L1 6000 6121 0 224 276 37 28 chr1 238979676 238979787 -3684566 + MIR SINE MIR 34 143 -65 2004 106 39 7 chr1 238981196 238981479 -3682874 - AluSc SINE Alu -1 308 17 633 205 18 0 chr1 238981619 238981731 -3682622 - MLT1B LTR MaLR -7 383 270 626 153 23 8 chr1 238981787 238981918 -3682435 + L1MC3 LINE L1 7558 7690 -95 5609 155 57 11 chr1 238981938 238983445 -3680908 + L1MA9 LINE L1 4734 6312 0 518 140 20 20 chr1 238983442 238983542 -3680811 + L1MC3 LINE L1 7678 7777 -8 * 604 342 161 21 chr1 238984900 238985572 -3678781 + L2 LINE L2 2308 3078 -194 2160 81 3 0 chr1 238985572 238985929 -3678424 - AluY SINE Alu 0 359 2 2211 108 0 0 chr1 238985931 238986238 -3678115 - AluSx SINE Alu -5 307 1 305 294 46 28 chr1 238986418 238986527 -3677826 + L2 LINE L2 3162 3272 0 340 296 113 7 chr1 238987105 238987247 -3677106 + MIR SINE MIR 27 183 -79 378 319 43 9 chr1 238988271 238988387 -3675966 + L2 LINE L2 3153 3272 0 387 60 0 0 chr1 238988402 238988452 -3675901 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 1848 128 14 17 chr1 238988472 238988768 -3675585 + AluSx SINE Alu 1 295 -17 2293 69 0 0 chr1 238989027 238989315 -3675038 - AluSg SINE Alu -2 308 21 1246 275 135 43 chr1 238989500 238989820 -3674533 - L1M4 LINE L1 -1053 5093 4804 1876 136 0 0 chr1 238989820 238990093 -3674260 - AluSx SINE Alu -39 273 1 1246 275 135 43 chr1 238990093 238991035 -3673318 - L1M4 LINE L1 -1342 4804 3715 291 250 89 73 chr1 238991039 238991163 -3673190 - L2 LINE L2 -11 3261 3136 297 328 104 23 chr1 238991183 238991442 -3672911 - L2 LINE L2 -345 2969 2690 2045 69 8 0 chr1 238991442 238991704 -3672649 + AluSx SINE Alu 1 264 -48 712 340 72 32 chr1 238991811 238992680 -3671673 - L2 LINE L2 -610 2704 1801 370 264 100 14 chr1 238992762 238992902 -3671451 + MIR SINE MIR 40 191 -71 417 109 0 0 chr1 238992981 238993045 -3671308 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 21 0 0 0 chr1 238993702 238993723 -3670630 + AT_rich Low_complexity Low_complexity 1 21 0 252 206 29 15 chr1 238994576 238994644 -3669709 + GA-rich Low_complexity Low_complexity 1 69 0 249 381 23 11 chr1 238994702 238994878 -3669475 + MIR3 SINE MIR 20 197 -11 315 0 0 0 chr1 238996069 238996104 -3668249 + (TG)n Simple_repeat Simple_repeat 1 35 0 1973 187 14 8 chr1 238997222 238997585 -3666768 - MLT1A1 LTR MaLR 0 365 1 1974 115 14 0 chr1 238998008 238998304 -3666049 + AluSq SINE Alu 7 306 -7 2087 103 7 7 chr1 238998369 238998669 -3665684 + AluSx SINE Alu 1 300 -12 274 191 118 15 chr1 238999234 238999302 -3665051 + L2 LINE L2 2992 3066 -206 221 0 35 0 chr1 238999303 238999332 -3665021 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 918 161 4 135 chr1 238999335 238999535 -3664818 - AluJo SINE Alu -30 282 124 2068 120 3 7 chr1 238999535 238999834 -3664519 + AluSx SINE Alu 1 298 -14 918 161 4 135 chr1 238999834 238999900 -3664453 - AluJo SINE Alu -188 124 51 268 282 26 13 chr1 238999990 239000068 -3664285 + L2 LINE L2 3105 3183 -89 223 136 0 45 chr1 239000132 239000176 -3664177 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 2031 129 10 0 chr1 239000374 239000683 -3663670 + AluJb SINE Alu 1 312 0 628 180 0 136 chr1 239001057 239001263 -3663090 - AluSq SINE Alu 0 313 136 579 311 122 16 chr1 239001263 239001697 -3662656 + L2 LINE L2 1805 2284 -1030 1475 180 80 96 chr1 239001700 239002138 -3662215 - LTR40c LTR ERVL 0 465 35 28 0 0 0 chr1 239002197 239002225 -3662128 + AT_rich Low_complexity Low_complexity 1 28 0 1713 157 0 10 chr1 239002240 239002534 -3661819 - AluJo SINE Alu -21 291 1 359 301 22 0 chr1 239002818 239002954 -3661399 - FAM SINE Alu -12 163 25 408 94 31 0 chr1 239003285 239003349 -3661004 + Alu SINE Alu 233 298 -14 563 229 0 8 chr1 239003349 239003467 -3660886 - AluJb SINE Alu -194 118 2 223 350 0 0 chr1 239004465 239004625 -3659728 + (TCTCG)n Simple_repeat Simple_repeat 5 164 0 570 278 0 0 chr1 239005072 239005252 -3659101 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 448 282 0 11 chr1 239005284 239005465 -3658888 + (TCCG)n Simple_repeat Simple_repeat 2 180 0 * 488 278 0 6 chr1 239005438 239005611 -3658742 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 23 0 0 0 chr1 239006212 239006235 -3658118 + AT_rich Low_complexity Low_complexity 1 23 0 796 102 0 73 chr1 239006566 239006703 -3657650 - L1PA6 LINE L1 -273 5881 5755 3984 193 43 21 chr1 239006884 239007770 -3656583 - L1MB7 LINE L1 0 6184 5280 1608 122 8 4 chr1 239007788 239008035 -3656318 - AluJo SINE Alu -15 297 50 23 0 0 0 chr1 239008050 239008073 -3656280 + AT_rich Low_complexity Low_complexity 1 23 0 1160 138 5 0 chr1 239008192 239008381 -3655972 - L1PA13 LINE L1 -7 6156 5967 405 203 40 0 chr1 239008555 239008629 -3655724 - FRAM SINE Alu -30 146 70 1877 114 11 11 chr1 239008634 239008771 -3655582 - AluSx SINE Alu -39 273 137 2197 79 3 35 chr1 239008771 239009087 -3655266 - AluY SINE Alu -5 306 1 1877 114 11 11 chr1 239009087 239009222 -3655131 - AluSx SINE Alu -174 138 1 207 0 0 0 chr1 239009294 239009317 -3655036 + (TG)n Simple_repeat Simple_repeat 2 24 0 30 27 0 0 chr1 239009421 239009458 -3654895 + AT_rich Low_complexity Low_complexity 1 37 0 1157 162 0 83 chr1 239009482 239009735 -3654618 + AluJo SINE Alu 1 232 -80 255 258 107 68 chr1 239009837 239010012 -3654341 - L1ME4a LINE L1 -149 5972 5783 988 168 0 12 chr1 239010012 239010179 -3654174 - FRAM SINE Alu -1 165 1 255 258 107 68 chr1 239010179 239010255 -3654098 - L1ME4a LINE L1 -338 5783 5711 1519 172 17 20 chr1 239011008 239011305 -3653048 - AluJo SINE Alu -16 296 1 2232 115 0 0 chr1 239011645 239011950 -3652403 + AluSx SINE Alu 1 305 -7 326 272 164 63 chr1 239012292 239012627 -3651726 + L1ME LINE L1 51 419 -5651 661 247 31 50 chr1 239012868 239013191 -3651162 + L1ME LINE L1 511 779 -5291 238 312 0 0 chr1 239013244 239013321 -3651032 + L1ME LINE L1 900 976 -5094 541 278 12 35 chr1 239014222 239014391 -3649962 - MIR SINE MIR 0 262 98 526 239 39 8 chr1 239014552 239014682 -3649671 - MER94 DNA DNA 0 134 1 203 200 191 67 chr1 239015850 239015955 -3648398 + MIR SINE MIR 30 147 -61 542 246 50 34 chr1 239016324 239016503 -3647850 + MER5A DNA MER1_type 7 188 -1 646 109 11 0 chr1 239016603 239016695 -3647658 + AluJb SINE Alu 205 297 -15 209 316 105 11 chr1 239016700 239016795 -3647558 + MIR SINE MIR 113 216 -46 186 133 0 0 chr1 239016843 239016873 -3647480 + (GA)n Simple_repeat Simple_repeat 2 31 0 2136 113 10 0 chr1 239017208 239017517 -3646836 + AluSx SINE Alu 1 312 0 1426 264 77 17 chr1 239017692 239018215 -3646138 - Charlie7 DNA MER1_type -1743 869 316 292 219 83 42 chr1 239018384 239018480 -3645873 - Charlie7 DNA MER1_type -2511 101 2 802 169 54 0 chr1 239019335 239019483 -3644870 - FRAM SINE Alu -26 150 1 423 259 51 60 chr1 239019505 239019721 -3644632 - L1ME LINE L1 -375 5746 5533 544 336 36 55 chr1 239020219 239020472 -3643881 - L2 LINE L2 0 3272 3025 451 321 83 9 chr1 239020582 239020800 -3643553 + MIR SINE MIR 18 251 -11 1008 243 279 23 chr1 239020966 239021029 -3643324 - L2 LINE L2 -1 3312 3266 2111 126 10 0 chr1 239021029 239021338 -3643015 + AluSx SINE Alu 1 312 0 1008 243 279 23 chr1 239021338 239022265 -3642088 - L2 LINE L2 -47 3266 2076 1973 98 10 39 chr1 239023303 239023647 -3640706 - AluSx SINE Alu 0 312 1 1798 142 7 17 chr1 239023912 239024207 -3640146 - AluJo SINE Alu -20 292 1 1637 192 22 0 chr1 239024207 239024530 -3639823 - L1MB7 LINE L1 -43 6141 5812 849 168 7 7 chr1 239025366 239025515 -3638838 - FRAM SINE Alu -26 150 2 3200 148 83 9 chr1 239025898 239026473 -3637880 + LTR26E LTR ERV1 4 621 -1 565 185 19 0 chr1 239026530 239026638 -3637715 - L1MB7 LINE L1 -379 5799 5690 1231 103 6 0 chr1 239027196 239027371 -3636982 - MER41B LTR ERV1 0 635 460 2357 42 3 0 chr1 239027371 239027654 -3636699 - AluY SINE Alu -11 300 17 517 61 0 0 chr1 239027654 239027720 -3636633 - Alu SINE Alu -243 67 2 3227 89 45 0 chr1 239027721 239028169 -3636184 - MER41B LTR ERV1 -167 468 1 2201 106 0 0 chr1 239028800 239029111 -3635242 + AluSq SINE Alu 1 311 -2 264 235 0 0 chr1 239029206 239029257 -3635096 + L2 LINE L2 3219 3269 -3 1603 142 22 41 chr1 239029334 239029650 -3634703 + AluJo SINE Alu 3 312 0 332 261 92 37 chr1 239029925 239030197 -3634156 - L2 LINE L2 -1043 2271 1985 218 184 0 0 chr1 239030211 239030249 -3634104 + MIR SINE MIR 212 249 -13 452 283 131 34 chr1 239030312 239030549 -3633804 + HAL1 LINE L1 2243 2502 -5 967 133 6 46 chr1 239030549 239030722 -3633631 - FRAM SINE Alu 0 166 1 556 153 0 0 chr1 239031602 239031687 -3632666 + FLAM_A SINE Alu 47 131 -11 408 88 0 0 chr1 239031687 239031707 -3632646 + (TG)n Simple_repeat Simple_repeat 1 77 0 408 88 0 0 chr1 239031707 239031764 -3632589 + (TG)n Simple_repeat Simple_repeat 2 58 0 846 173 13 6 chr1 239031776 239031970 -3632383 + AluJb SINE Alu 125 319 0 722 178 65 121 chr1 239032112 239032457 -3631896 - MLT1C LTR MaLR -90 377 53 1359 190 92 12 chr1 239032457 239032783 -3631570 + MLT1A1 LTR MaLR 2 353 -12 2173 107 0 7 chr1 239033911 239034220 -3630133 + AluSx SINE Alu 1 307 -5 291 209 146 18 chr1 239034813 239034923 -3629430 + L2 LINE L2 2419 2542 -772 1613 170 30 9 chr1 239034924 239035254 -3629099 + L1MB3 LINE L1 5843 6179 -4 1080 153 6 0 chr1 239035311 239035474 -3628879 - U1 snRNA snRNA -1 164 1 997 263 135 37 chr1 239035609 239036298 -3628055 + L2 LINE L2 2550 3313 0 258 200 0 20 chr1 239036327 239036377 -3627976 - LTR33A LTR ERVL -16 507 459 6820 117 33 17 chr1 239036394 239037226 -3627127 - L1MA1 LINE L1 -4 6298 5481 2109 116 6 3 chr1 239037226 239037537 -3626816 - AluSx SINE Alu 0 312 1 6820 117 33 17 chr1 239037537 239037953 -3626400 - L1MA1 LINE L1 -821 5481 5016 4323 83 5 0 chr1 239037953 239038504 -3625849 + MER41A LTR ERV1 1 554 0 6820 117 33 17 chr1 239038504 239038838 -3625515 - L1MA1 LINE L1 -1286 5016 4689 783 265 62 55 chr1 239039446 239039555 -3624798 - MIR SINE MIR -1 261 154 2023 131 0 0 chr1 239039555 239039871 -3624482 - AluSx SINE Alu 0 316 1 783 265 62 55 chr1 239039871 239040016 -3624337 - MIR SINE MIR -108 154 3 579 234 76 7 chr1 239040963 239041108 -3623245 + MIR3 SINE MIR 32 186 -22 189 0 0 0 chr1 239041129 239041150 -3623203 + (CAGCT)n Simple_repeat Simple_repeat 4 24 0 890 206 25 66 chr1 239041350 239041378 -3622975 - MIR SINE MIR -3 259 231 2076 99 3 20 chr1 239041378 239041680 -3622673 - AluSx SINE Alu -15 297 1 890 206 25 66 chr1 239041680 239041894 -3622459 - MIR SINE MIR -31 231 27 370 209 0 81 chr1 239041944 239042030 -3622323 + L2 LINE L2 3224 3302 -11 227 287 50 30 chr1 239042964 239043065 -3621288 - L2 LINE L2 -2 3311 3209 311 203 182 1 chr1 239043508 239043588 -3620765 + MER5A DNA MER1_type 31 126 -55 180 305 0 0 chr1 239043667 239043726 -3620627 - L2 LINE L2 -558 2756 2698 492 171 12 0 chr1 239044615 239044697 -3619656 - AluS SINE Alu -229 84 2 1297 150 0 17 chr1 239044841 239045075 -3619278 - AluJb SINE Alu -1 311 82 307 168 1 105 chr1 239045078 239045191 -3619162 + L1MC5 LINE L1 7042 7127 -681 1114 252 43 80 chr1 239045360 239045920 -3618433 + L1MC5 LINE L1 7298 7836 -125 2192 109 0 0 chr1 239045959 239046271 -3618082 - AluSx SINE Alu 0 312 1 1964 127 0 0 chr1 239047843 239048162 -3616191 + AluSx SINE Alu 1 319 0 297 230 153 65 chr1 239048559 239048756 -3615597 + L1MC4a LINE L1 6783 6987 -821 274 167 0 42 chr1 239048745 239048817 -3615536 + L1MA4 LINE L1 6230 6298 -2 * 1174 201 65 55 chr1 239048911 239049308 -3615045 + L1MC5 LINE L1 7134 7534 -427 2286 89 0 0 chr1 239049308 239049611 -3614742 + AluSx SINE Alu 1 303 -9 261 0 0 0 chr1 239049676 239049705 -3614648 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2119 97 0 14 chr1 239050179 239050501 -3613852 - AluSq SINE Alu 0 318 1 2176 149 0 15 chr1 239050529 239050871 -3613482 + MER1B DNA MER1_type 1 337 0 192 216 0 0 chr1 239050994 239051045 -3613308 + (TA)n Simple_repeat Simple_repeat 1 51 0 24 0 0 0 chr1 239051552 239051576 -3612777 + GC_rich Low_complexity Low_complexity 1 24 0 1970 75 4 19 chr1 239051576 239051844 -3612509 - AluSx SINE Alu -18 294 31 228 171 24 0 chr1 239052763 239052804 -3611549 + L2 LINE L2 3272 3313 0 338 366 80 19 chr1 239052889 239053252 -3611101 - L2 LINE L2 -384 2930 2546 647 258 96 19 chr1 239054059 239054268 -3610085 - MIR SINE MIR -32 230 6 23 33 0 0 chr1 239055217 239055247 -3609106 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr1 239055714 239055748 -3608605 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 77 0 0 chr1 239056622 239056648 -3607705 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 681 246 105 13 chr1 239056820 239057048 -3607305 - MIR SINE MIR -1 261 13 216 0 0 0 chr1 239057049 239057073 -3607280 + (TC)n Simple_repeat Simple_repeat 2 25 0 330 339 92 55 chr1 239057402 239057721 -3606632 + L2 LINE L2 2853 3191 -81 2318 76 0 3 chr1 239057721 239058024 -3606329 - AluSx SINE Alu -10 302 1 330 339 92 55 chr1 239058024 239058105 -3606248 + L2 LINE L2 3191 3268 -4 22 0 0 0 chr1 239058177 239058199 -3606154 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 239058372 239058394 -3605959 + AT_rich Low_complexity Low_complexity 1 22 0 773 222 42 0 chr1 239058744 239058911 -3605442 + L1MB3 LINE L1 6008 6181 -2 249 33 0 0 chr1 239059671 239059701 -3604652 + (CA)n Simple_repeat Simple_repeat 2 31 0 1453 205 18 0 chr1 239060116 239060399 -3603954 + AluJo SINE Alu 1 288 -24 1755 138 18 11 chr1 239060830 239061112 -3603241 + AluSc SINE Alu 1 284 -25 2104 108 0 7 chr1 239061374 239061671 -3602682 - AluSg SINE Alu -15 295 1 420 341 82 23 chr1 239061930 239062150 -3602203 + MIR SINE MIR 28 260 -2 234 254 28 28 chr1 239062360 239062431 -3601922 + L2 LINE L2 3200 3270 -2 2156 92 7 0 chr1 239062798 239063093 -3601260 + AluSx SINE Alu 1 297 -15 842 225 21 0 chr1 239063101 239063288 -3601065 + L1MB3 LINE L1 5993 6183 0 444 281 23 83 chr1 239063819 239064036 -3600317 + MIR SINE MIR 3 206 -56 1238 212 55 4 chr1 239064442 239064716 -3599637 + LTR16C LTR ERVL 201 488 -3 218 340 97 39 chr1 239065025 239065725 -3598628 - L2 LINE L2 -1051 2263 1523 2366 87 3 0 chr1 239066337 239066647 -3597706 - AluSq SINE Alu -2 311 1 1115 127 36 0 chr1 239067173 239067338 -3597015 + THE1B LTR MaLR 1 171 -193 2065 120 42 39 chr1 239067342 239067675 -3596678 + THE1B LTR MaLR 29 362 -2 3455 156 51 3 chr1 239068203 239068832 -3595521 - L1MB3 LINE L1 -3 6180 5522 2250 105 0 0 chr1 239069122 239069427 -3594926 - AluSq SINE Alu -8 305 1 1464 185 38 0 chr1 239069917 239070209 -3594144 - L1PB4 LINE L1 -2 6154 5852 2230 107 0 3 chr1 239070270 239070580 -3593773 + AluSc SINE Alu 1 309 0 2194 82 0 0 chr1 239071253 239071579 -3592774 + AluSg SINE Alu 1 326 0 1800 88 0 0 chr1 239072045 239072283 -3592070 + AluSx SINE Alu 59 296 -16 1480 195 51 14 chr1 239073965 239074409 -3589944 + L1M4 LINE L1 4985 5447 -731 324 224 13 0 chr1 239074411 239074487 -3589866 + L1M4 LINE L1 5518 5594 -590 320 0 25 0 chr1 239075321 239075361 -3588992 + (CA)n Simple_repeat Simple_repeat 2 42 0 430 199 78 78 chr1 239076174 239076315 -3588038 + L2 LINE L2 3167 3307 -6 366 247 171 25 chr1 239127259 239127417 -3536936 + MER5A DNA MER1_type 9 189 0 212 318 8 71 chr1 239127542 239127668 -3536685 + MIR SINE MIR 110 227 -35 2391 105 0 6 chr1 239127747 239128061 -3536292 + AluSx SINE Alu 1 312 0 1555 190 30 13 chr1 239128379 239128679 -3535674 + AluJo SINE Alu 1 305 -7 219 176 0 59 chr1 239128680 239128765 -3535588 + GA-rich Low_complexity Low_complexity 1 80 0 2179 109 0 0 chr1 239129000 239129284 -3535069 - AluSg SINE Alu -11 299 16 640 288 38 19 chr1 239129352 239129564 -3534789 + MIR SINE MIR 45 260 -2 373 274 94 0 chr1 239129856 239129962 -3534391 + L2 LINE L2 3198 3313 0 434 243 99 9 chr1 239129966 239130077 -3534276 - MIR3 SINE MIR -42 166 46 228 324 0 0 chr1 239130173 239130241 -3534112 + CT-rich Low_complexity Low_complexity 3 70 0 1978 159 0 13 chr1 239130812 239131113 -3533240 + AluJo SINE Alu 1 297 -15 2043 118 17 20 chr1 239131124 239131420 -3532933 + AluSq SINE Alu 1 295 -18 649 195 108 72 chr1 239131480 239131652 -3532701 - MER5C DNA MER1_type 0 324 137 2354 98 7 3 chr1 239131652 239131958 -3532395 + AluSq SINE Alu 1 307 -6 649 195 108 72 chr1 239131958 239132062 -3532291 - MER5C DNA MER1_type -187 137 38 2064 113 30 13 chr1 239132564 239132865 -3531488 - AluSx SINE Alu -2 310 5 2042 104 47 0 chr1 239132967 239133245 -3531108 + AluSx SINE Alu 1 291 -21 625 129 0 0 chr1 239135207 239135300 -3529053 + FLAM_C SINE Alu 26 118 -25 962 284 107 36 chr1 239135620 239135720 -3528633 - L1ME3 LINE L1 -274 5888 5796 2267 86 0 0 chr1 239135720 239136019 -3528334 - AluSg SINE Alu 0 299 1 962 284 107 36 chr1 239136019 239136499 -3527854 - L1ME3 LINE L1 -366 5796 5266 363 167 0 0 chr1 239136499 239136565 -3527788 + (CA)n Simple_repeat Simple_repeat 2 67 0 432 251 29 34 chr1 239136565 239136740 -3527613 - L1ME3 LINE L1 -886 5260 5087 1436 127 0 19 chr1 239136742 239136954 -3527399 + AluSg/x SINE Alu 105 312 0 1773 153 3 64 chr1 239136998 239137325 -3527028 - AluJo SINE Alu -5 307 1 480 48 0 0 chr1 239137806 239137869 -3526484 + (CA)n Simple_repeat Simple_repeat 2 64 0 2283 96 3 37 chr1 239138585 239138728 -3525625 + AluSx SINE Alu 1 147 -165 2302 92 14 0 chr1 239138728 239139023 -3525330 + AluSg1 SINE Alu 2 300 -9 2283 96 3 37 chr1 239139023 239139202 -3525151 + AluSx SINE Alu 147 312 0 771 83 0 0 chr1 239139949 239140070 -3524283 + (CA)n Simple_repeat Simple_repeat 2 122 0 22 0 0 0 chr1 239140232 239140254 -3524099 + AT_rich Low_complexity Low_complexity 1 22 0 2064 130 0 23 chr1 239140254 239140562 -3523791 + AluSx SINE Alu 1 301 -11 1917 126 51 10 chr1 239142191 239142484 -3521869 - AluY SINE Alu -6 305 1 1989 117 39 0 chr1 239142575 239142858 -3521495 - AluSx SINE Alu -10 302 9 25 51 0 0 chr1 239143074 239143113 -3521240 + AT_rich Low_complexity Low_complexity 1 39 0 1368 285 100 65 chr1 239143756 239143917 -3520436 - L1M4 LINE L1 -744 5402 5248 3012 173 48 9 chr1 239143917 239144456 -3519897 - MER68 LTR ERV1 -1 561 2 1368 285 100 65 chr1 239144456 239145071 -3519282 - L1M4 LINE L1 -898 5248 4655 1887 137 32 45 chr1 239145071 239145385 -3518968 + AluJb SINE Alu 1 310 -2 1368 285 100 65 chr1 239145385 239146079 -3518274 - L1M4 LINE L1 -1491 4655 3849 2349 97 3 7 chr1 239146079 239146388 -3517965 - AluSx SINE Alu -4 308 1 1368 285 100 65 chr1 239146388 239146822 -3517531 - L1M4 LINE L1 -2297 3849 3431 2601 55 0 3 chr1 239146880 239147189 -3517164 - AluY SINE Alu -3 308 1 1798 188 75 13 chr1 239148014 239148387 -3515966 + MSTD LTR MaLR 1 396 0 291 260 14 0 chr1 239149194 239149267 -3515086 + MIR SINE MIR 68 141 -121 282 165 76 76 chr1 239149452 239149531 -3514822 - MIR3 SINE MIR -16 192 114 5096 139 63 13 chr1 239149645 239150505 -3513848 + MER4D LTR ERV1 1 903 0 2230 109 3 3 chr1 239150819 239151113 -3513240 + AluSx SINE Alu 1 294 -18 1860 172 0 10 chr1 239152730 239153038 -3511315 + AluJb SINE Alu 1 305 -7 677 147 7 20 chr1 239154063 239154213 -3510140 + CT-rich Low_complexity Low_complexity 4 151 0 2260 78 57 0 chr1 239154215 239154511 -3509842 - AluSp SINE Alu 0 313 1 645 165 0 0 chr1 239154535 239154656 -3509697 + CT-rich Low_complexity Low_complexity 1 121 0 1869 171 7 0 chr1 239154657 239154961 -3509392 - AluJo SINE Alu -6 306 1 2250 112 0 3 chr1 239155520 239155832 -3508521 - AluSp SINE Alu -2 311 1 218 300 0 0 chr1 239156034 239156094 -3508259 + MIR SINE MIR 203 262 0 2286 94 3 0 chr1 239157690 239157988 -3506365 + AluY SINE Alu 1 299 -12 2516 62 0 10 chr1 239157995 239158301 -3506052 + AluY SINE Alu 1 303 -8 1016 267 89 40 chr1 239158317 239158665 -3505688 + L1ME LINE L1 4736 5065 -1097 1703 156 0 65 chr1 239158665 239158986 -3505367 - AluJb SINE Alu -12 300 1 1016 267 89 40 chr1 239158986 239159527 -3504826 + L1ME LINE L1 5065 5667 -495 2270 114 3 0 chr1 239159575 239159883 -3504470 - AluSg1 SINE Alu 0 309 1 182 290 174 0 chr1 239159884 239159953 -3504400 + MIR SINE MIR 64 144 -118 504 0 0 0 chr1 239160714 239160770 -3503583 + (CA)n Simple_repeat Simple_repeat 1 56 0 744 240 0 0 chr1 239161111 239161265 -3503088 + FRAM SINE Alu 1 154 -12 1992 110 11 11 chr1 239161273 239161603 -3502750 + AluY SINE Alu 1 330 0 406 180 214 0 chr1 239161894 239161983 -3502370 + MER81 DNA DNA 1 108 -6 250 224 118 0 chr1 239162040 239162125 -3502228 + MLT1C LTR MaLR 1 95 -372 4077 185 26 22 chr1 239162283 239163300 -3501053 - L1P2 LINE L1 -630 5524 4499 2189 187 24 24 chr1 239163365 239163857 -3500496 - L1M4c LINE L1 -2123 4259 3768 1567 249 37 51 chr1 239163957 239164072 -3500281 - L1M4c LINE L1 -3497 2885 2770 2121 123 3 13 chr1 239164072 239164382 -3499971 + AluSx SINE Alu 1 307 -5 1567 249 37 51 chr1 239164382 239165157 -3499196 - L1M4c LINE L1 -3612 2770 2001 4713 44 3 9 chr1 239165168 239165740 -3498613 - L1PA7 LINE L1 -1 6153 5585 4142 57 3 7 chr1 239165740 239166581 -3497772 - L1P3 LINE L1 -475 5679 4843 1185 249 77 12 chr1 239166585 239166999 -3497354 - L1M4c LINE L1 -4485 1899 1459 2005 123 42 3 chr1 239167000 239167284 -3497069 + AluSq SINE Alu 1 295 -18 1307 276 69 34 chr1 239167288 239167813 -3496540 - L1M4c LINE L1 -5378 925 414 1444 237 26 37 chr1 239167816 239168196 -3496157 + MLT1C LTR MaLR 80 455 -12 254 290 150 0 chr1 239169707 239169807 -3494546 + MIR3 SINE MIR 53 167 -41 1908 174 0 6 chr1 239170234 239170545 -3493808 - AluJo SINE Alu -1 311 3 462 130 3 42 chr1 239170894 239170985 -3493368 - MER61-int LTR ERV1 -119 8780 7221 270 49 73 0 chr1 239170983 239171024 -3493329 - MER61-int LTR ERV1 -1809 3408 3365 * 642 174 42 21 chr1 239170999 239171140 -3493213 + HUERS-P3b LTR ERV1 6850 7411 -7 536 24 0 96 chr1 239171141 239171170 -3493183 + LTR9B LTR ERV1 1 31 -613 2355 66 3 60 chr1 239171170 239171489 -3492864 + AluY SINE Alu 1 301 -10 536 24 0 96 chr1 239171489 239171542 -3492811 + LTR9B LTR ERV1 31 75 -569 8032 12 1 0 chr1 239171542 239172956 -3491397 - L1PA2 LINE L1 0 6155 4740 2844 16 0 0 chr1 239172956 239173277 -3491076 + L1PA2 LINE L1 4415 4735 -1411 2983 125 42 4 chr1 239173277 239173756 -3490597 + LTR9B LTR ERV1 61 557 -87 2125 114 0 0 chr1 239174723 239175012 -3489341 - AluSg SINE Alu -15 295 7 345 267 152 54 chr1 239175361 239175657 -3488696 - L1MEd LINE L1 -5477 642 318 705 200 45 114 chr1 239175718 239175789 -3488564 - MLT1H LTR MaLR -2 540 466 2343 93 3 3 chr1 239175789 239176100 -3488253 + AluSp SINE Alu 1 311 -2 705 200 45 114 chr1 239176100 239176500 -3487853 - MLT1H LTR MaLR -76 466 1 659 61 0 0 chr1 239176704 239176786 -3487567 + AluJ/FLAM SINE Alu 12 93 -219 1235 138 16 0 chr1 239176871 239177060 -3487293 + AluJo SINE Alu 121 312 0 1930 148 0 23 chr1 239177289 239177592 -3486761 + AluSx SINE Alu 5 300 -12 2241 115 0 3 chr1 239177858 239178154 -3486199 + AluSx SINE Alu 1 295 -17 2288 95 3 7 chr1 239178531 239178837 -3485516 - AluSp SINE Alu -8 305 1 288 314 131 7 chr1 239181052 239181189 -3483164 + L2 LINE L2 3106 3259 -13 306 0 0 0 chr1 239181189 239181223 -3483130 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 3910 89 45 0 chr1 239181282 239181811 -3482542 - MER41A LTR ERV1 0 554 2 2183 219 87 8 chr1 239181820 239182327 -3482026 - MLT1H LTR MaLR 0 549 3 212 295 86 19 chr1 239183006 239183111 -3481242 - L2 LINE L2 -557 2757 2646 204 40 0 0 chr1 239184119 239184144 -3480209 + (TG)n Simple_repeat Simple_repeat 2 26 0 2391 103 3 0 chr1 239184578 239184890 -3479463 - AluSp SINE Alu 0 313 1 2155 98 0 10 chr1 239185678 239185975 -3478378 - AluSx SINE Alu -18 294 1 271 325 0 25 chr1 239186985 239187065 -3477288 + L2 LINE L2 3179 3256 -16 583 298 32 16 chr1 239188044 239188073 -3476280 - MIR SINE MIR -71 191 164 2237 102 0 0 chr1 239188073 239188368 -3475985 + AluSx SINE Alu 1 295 -17 583 298 32 16 chr1 239188368 239188526 -3475827 - MIR SINE MIR -98 164 1 258 308 111 34 chr1 239188692 239188809 -3475544 - L2 LINE L2 0 3272 3147 2138 95 0 0 chr1 239188888 239189200 -3475153 - AluSx SINE Alu 0 312 1 1747 174 90 45 chr1 239189276 239189678 -3474675 + L1MB3 LINE L1 5744 6163 -20 198 0 0 0 chr1 239190334 239190356 -3473997 + (T)n Simple_repeat Simple_repeat 1 22 0 399 302 58 48 chr1 239190582 239190771 -3473582 - MIR SINE MIR -68 194 4 2289 103 0 0 chr1 239191531 239191841 -3472512 - AluSx SINE Alu -2 310 1 2155 100 3 3 chr1 239191844 239192143 -3472210 - AluSx SINE Alu -13 299 1 2297 97 0 0 chr1 239193722 239194030 -3470323 + AluSg SINE Alu 2 309 -1 342 353 0 25 chr1 239194078 239194200 -3470153 + MIR3 SINE MIR 41 159 -49 2276 14 0 14 chr1 239194315 239194593 -3469760 - AluY SINE Alu -37 274 1 210 189 0 0 chr1 239194593 239194630 -3469723 + MIR3 SINE MIR 155 191 -17 213 175 0 0 chr1 239195731 239195771 -3468582 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 378 74 0 0 chr1 239195771 239195825 -3468528 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 372 215 23 23 chr1 239195852 239195980 -3468373 + FRAM SINE Alu 69 127 -39 * 434 283 254 6 chr1 239195977 239196154 -3468199 + MER69 DNA AcHobo 344 564 -1962 592 164 17 0 chr1 239196183 239196299 -3468054 + MER69 DNA AcHobo 2163 2280 -246 4004 164 79 20 chr1 239196302 239196752 -3467601 + L1MB7 LINE L1 5107 5529 -655 2426 65 3 0 chr1 239196752 239197062 -3467291 + AluY SINE Alu 1 311 0 4004 164 79 20 chr1 239197062 239197631 -3466722 + L1MB7 LINE L1 5529 6184 0 1755 43 0 0 chr1 239198835 239199046 -3465307 - AluY SINE Alu -14 297 87 908 163 4 75 chr1 239199623 239199850 -3464503 + AluJo SINE Alu 86 296 -16 1113 227 147 46 chr1 239200319 239200755 -3463598 + MLT2B1 LTR ERVL 1 480 -40 312 172 0 17 chr1 239200816 239200874 -3463479 + MLT2A2 LTR ERVL 397 453 0 244 156 73 0 chr1 239200929 239201025 -3463328 + (TA)n Simple_repeat Simple_repeat 2 104 0 379 133 0 53 chr1 239201026 239201101 -3463252 + MLT2B1 LTR ERVL 450 520 0 255 181 53 0 chr1 239201153 239201247 -3463106 + (TA)n Simple_repeat Simple_repeat 2 100 0 381 101 0 101 chr1 239201252 239201331 -3463022 + MLT2B1 LTR ERVL 450 520 0 290 265 308 0 chr1 239201518 239201635 -3462718 - MIR SINE MIR -39 223 71 1024 138 6 0 chr1 239202559 239202745 -3461608 + FRAM SINE Alu 1 176 0 2123 104 10 0 chr1 239202754 239203052 -3461301 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr1 239203394 239203415 -3460938 + AT_rich Low_complexity Low_complexity 1 21 0 366 251 47 77 chr1 239203700 239203889 -3460464 - MIR3 SINE MIR -60 148 10 2171 67 3 3 chr1 239203983 239204292 -3460061 + AluSc SINE Alu 1 309 0 2177 96 0 13 chr1 239205269 239205582 -3458771 + AluSx SINE Alu 1 309 -3 2416 65 3 0 chr1 239206002 239206310 -3458043 + AluSp SINE Alu 1 309 -4 821 152 14 0 chr1 239206332 239206470 -3457883 + L1MB3 LINE L1 6006 6145 -38 962 185 9 24 chr1 239206471 239206543 -3457810 + AluJb SINE Alu 60 132 -180 2156 97 37 0 chr1 239206543 239206842 -3457511 + AluSx SINE Alu 1 310 -2 962 185 9 24 chr1 239206842 239206980 -3457373 + AluJb SINE Alu 132 267 -45 253 122 102 0 chr1 239206990 239207039 -3457314 + L1MB4 LINE L1 6126 6179 -1 2017 88 53 7 chr1 239207244 239207527 -3456826 - AluSq SINE Alu -17 296 1 206 241 126 103 chr1 239208285 239208372 -3455981 + MIR3 SINE MIR 114 202 -6 236 340 13 58 chr1 239211129 239211285 -3453068 - MIR SINE MIR -50 212 64 1247 165 37 8 chr1 239211415 239211657 -3452696 - L1MC2 LINE L1 -13 6331 6083 1960 141 3 3 chr1 239211769 239212081 -3452272 - AluSx SINE Alu 0 312 1 871 167 33 6 chr1 239212184 239212364 -3451989 - L1MC2 LINE L1 -265 6079 5895 2402 59 35 74 chr1 239213061 239213521 -3450832 + L1PA8 LINE L1 5729 6170 -2 184 328 90 16 chr1 239214347 239214469 -3449884 - MIR SINE MIR -27 235 105 203 219 24 0 chr1 239214871 239214912 -3449441 - L2 LINE L2 -2 3270 3229 201 256 6 57 chr1 239215030 239215206 -3449147 + (GGGTG)n Simple_repeat Simple_repeat 4 170 0 * 220 238 47 64 chr1 239215145 239215317 -3449036 + G-rich Low_complexity Low_complexity 4 172 0 2383 90 0 0 chr1 239215934 239216246 -3448107 + AluSx SINE Alu 1 312 0 383 156 26 13 chr1 239216344 239216421 -3447932 + MER116 DNA Mariner 1 78 -2 2169 92 10 0 chr1 239216553 239216856 -3447497 + AluSp SINE Alu 1 306 -7 209 299 37 65 chr1 239217921 239218028 -3446325 - MIR3 SINE MIR -6 202 99 584 228 2 34 chr1 239218171 239218354 -3445999 - MER69 DNA AcHobo -8 2518 1 1345 181 90 4 chr1 239220934 239221211 -3443142 - AluJo SINE Alu -11 301 1 1309 181 0 0 chr1 239221613 239221839 -3442514 - AluSx SINE Alu -26 286 61 435 287 36 0 chr1 239221961 239222128 -3442225 + G-rich Low_complexity Low_complexity 4 176 0 1962 141 3 0 chr1 239223131 239223437 -3440916 + AluSx SINE Alu 1 307 -5 2677 150 20 26 chr1 239224410 239224911 -3439442 + L1MB3 LINE L1 5676 6173 -10 2187 91 0 3 chr1 239225002 239225298 -3439055 + AluSx SINE Alu 1 295 -17 514 328 29 7 chr1 239226047 239226255 -3438098 - MIR SINE MIR -19 243 32 1828 127 7 34 chr1 239228421 239228768 -3435585 - AluSx SINE Alu 0 339 1 342 0 0 0 chr1 239228805 239228843 -3435510 + (TG)n Simple_repeat Simple_repeat 1 38 0 243 250 62 0 chr1 239228881 239228961 -3435392 + L2 LINE L2 3229 3313 0 981 225 28 9 chr1 239229542 239229760 -3434593 + MER58A DNA MER1_type 1 222 -2 2124 89 10 7 chr1 239230271 239230564 -3433789 - AluSg SINE Alu -16 294 1 246 116 232 0 chr1 239230895 239230964 -3433389 - L1MB7 LINE L1 -17 6167 6083 1993 169 3 12 chr1 239231418 239231762 -3432591 + MER2 DNA MER2_type 1 341 -3 498 294 84 60 chr1 239231853 239232285 -3432068 - L2 LINE L2 0 3313 2515 1762 167 3 6 chr1 239232595 239232907 -3431446 - AluJb SINE Alu 0 312 2 216 0 0 0 chr1 239233835 239233859 -3430494 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2241 91 3 0 chr1 239234092 239234390 -3429963 + AluSx SINE Alu 2 300 -12 402 226 17 0 chr1 239235331 239235534 -3428819 + CT-rich Low_complexity Low_complexity 1 206 0 1186 53 0 0 chr1 239235657 239235807 -3428546 + AluY SINE Alu 159 308 -3 2417 292 171 50 chr1 239236566 239236819 -3427534 + L2 LINE L2 20 241 -3073 2466 119 28 40 chr1 239236819 239237205 -3427148 + MSTA LTR MaLR 5 387 -41 2146 102 0 37 chr1 239237205 239237527 -3426826 - AluSg SINE Alu 0 310 1 2466 119 28 40 chr1 239237527 239237569 -3426784 + MSTA LTR MaLR 387 428 0 2417 292 171 50 chr1 239237569 239238586 -3425767 + L2 LINE L2 241 1134 -2180 1534 173 29 29 chr1 239238586 239238898 -3425455 - AluJo SINE Alu 0 312 1 2417 292 171 50 chr1 239238898 239239642 -3424711 + L2 LINE L2 1134 2279 -1035 1877 174 36 17 chr1 239239646 239240002 -3424351 - MLT1A1 LTR MaLR -1 364 2 962 254 121 29 chr1 239240005 239240450 -3423903 + L2 LINE L2 2828 3313 0 180 0 0 0 chr1 239240845 239240865 -3423488 + (A)n Simple_repeat Simple_repeat 1 20 0 24 32 0 0 chr1 239241323 239241354 -3422999 + AT_rich Low_complexity Low_complexity 1 31 0 525 285 54 21 chr1 239242840 239243026 -3421327 - MIR SINE MIR -50 212 21 244 293 182 10 chr1 239243111 239243210 -3421143 + L2 LINE L2 3197 3312 -1 189 0 0 0 chr1 239243536 239243557 -3420796 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1841 160 0 0 chr1 239243562 239243849 -3420504 - AluSx SINE Alu -25 287 1 209 98 24 0 chr1 239244122 239244163 -3420190 + (TG)n Simple_repeat Simple_repeat 2 43 0 2182 96 0 13 chr1 239246197 239246510 -3417843 - AluSx SINE Alu -3 309 1 875 161 35 0 chr1 239246536 239246679 -3417674 - MER20 DNA MER1_type -53 166 19 1467 150 0 0 chr1 239246683 239246910 -3417443 + AluJb SINE Alu 85 311 -1 428 264 26 32 chr1 239247268 239247423 -3416930 - MER5A DNA MER1_type -32 157 4 2194 101 0 3 chr1 239247559 239247865 -3416488 + AluSx SINE Alu 1 305 -7 1268 283 43 21 chr1 239247930 239248577 -3415776 - L2 LINE L2 0 3313 2644 501 242 19 69 chr1 239248794 239248954 -3415399 - L1MA10 LINE L1 0 6288 6014 1649 156 42 0 chr1 239249202 239249490 -3414863 - AluJb SINE Alu -12 300 1 1763 79 0 0 chr1 239249577 239249831 -3414522 + AluY SINE Alu 54 307 0 2148 108 0 3 chr1 239250298 239250605 -3413748 - AluSx SINE Alu -6 306 1 516 84 0 32 chr1 239250917 239251012 -3413341 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 579 168 8 42 chr1 239251012 239251131 -3413222 - AluJb SINE Alu -196 116 2 2096 130 0 0 chr1 239251148 239251456 -3412897 - AluSx SINE Alu -2 310 3 680 272 24 28 chr1 239251715 239251928 -3412425 - MIR SINE MIR 0 262 51 1731 133 60 7 chr1 239252015 239252300 -3412053 + AluSx SINE Alu 1 300 -12 2132 79 0 36 chr1 239253532 239253837 -3410516 + AluSc SINE Alu 1 294 -15 529 99 0 0 chr1 239253984 239254055 -3410298 - AluS SINE Alu -237 75 5 2112 128 3 0 chr1 239254475 239254781 -3409572 - AluSx SINE Alu -5 307 1 187 384 71 0 chr1 239255364 239255476 -3408877 + L2 LINE L2 3146 3265 -7 2100 84 20 3 chr1 239255708 239256005 -3408348 - AluSc SINE Alu -7 302 1 181 292 123 0 chr1 239256310 239256375 -3407978 + MIR SINE MIR 20 92 -116 191 182 0 143 chr1 239257097 239257174 -3407179 - MIR SINE MIR -86 122 57 2268 93 3 0 chr1 239257537 239257839 -3406514 + AluY SINE Alu 2 304 -7 372 351 161 0 chr1 239259012 239259186 -3405167 + MIR SINE MIR 42 243 -19 714 271 88 46 chr1 239259874 239260136 -3404217 - MLT1J2 LTR MaLR -70 380 108 1553 139 3 61 chr1 239260139 239260433 -3403920 + AluJb SINE Alu 2 278 -34 294 98 0 0 chr1 239260448 239260499 -3403854 + (GA)n Simple_repeat Simple_repeat 2 52 0 285 299 21 0 chr1 239260503 239260600 -3403753 - MLT1J2 LTR MaLR -337 113 15 387 261 72 36 chr1 239260820 239260958 -3403395 - MIR SINE MIR -59 203 61 285 291 73 0 chr1 239261481 239261591 -3402762 - L1ME4a LINE L1 -221 5900 5783 277 47 47 0 chr1 239261620 239261663 -3402690 + MADE1 DNA Mariner 1 45 -35 1316 184 90 4 chr1 239262481 239262758 -3401595 - AluJo SINE Alu -11 301 1 513 292 35 0 chr1 239264042 239264186 -3400167 + MIR SINE MIR 56 204 -58 3874 171 84 24 chr1 239265044 239265613 -3398740 - L1MB7 LINE L1 0 6184 5651 2426 65 3 0 chr1 239265613 239265923 -3398430 - AluY SINE Alu 0 311 1 3874 171 84 24 chr1 239265923 239266369 -3397984 - L1MB7 LINE L1 -533 5651 5108 307 252 57 0 chr1 239266372 239266495 -3397858 - MER69 DNA AcHobo -234 2292 2163 253 187 0 93 chr1 239266700 239266775 -3397578 - AluJ/FRAM SINE Alu -10 292 225 282 54 0 0 chr1 239266899 239266936 -3397417 + MADE1 DNA Mariner 44 80 0 284 258 0 0 chr1 239267353 239267415 -3396938 - L2 LINE L2 -4 3309 3248 1860 169 56 3 chr1 239268546 239268866 -3395487 + MER1B DNA MER1_type 1 337 0 1421 132 5 5 chr1 239268880 239269099 -3395254 - L1PA15 LINE L1 0 6165 5947 189 316 213 29 chr1 239269349 239269485 -3394868 + MIR SINE MIR 32 192 -70 294 294 28 28 chr1 239269504 239269613 -3394740 - MIR3 SINE MIR -11 197 89 1666 145 20 14 chr1 239270303 239270599 -3393754 + AluJo SINE Alu 3 300 -12 216 0 0 0 chr1 239270599 239270623 -3393730 + (TA)n Simple_repeat Simple_repeat 2 25 0 2089 161 107 64 chr1 239271430 239271572 -3392781 + MLT1D LTR MaLR 1 135 -370 2013 114 35 0 chr1 239271572 239271861 -3392492 - AluSx SINE Alu -13 299 1 2089 161 107 64 chr1 239271861 239272202 -3392151 + MLT1D LTR MaLR 135 505 0 606 205 8 39 chr1 239272861 239272988 -3391365 + MER5B DNA MER1_type 1 123 -55 863 213 171 58 chr1 239273111 239273164 -3391189 - MLT1C LTR MaLR -1 466 420 2305 97 0 0 chr1 239273164 239273473 -3390880 - AluSx SINE Alu -3 309 1 1735 92 0 0 chr1 239273473 239273700 -3390653 - AluSx SINE Alu -85 227 1 863 213 171 58 chr1 239273700 239273973 -3390380 - MLT1C LTR MaLR -46 421 102 426 164 0 0 chr1 239273979 239274052 -3390301 - MADE1 DNA Mariner -7 73 1 325 70 53 0 chr1 239274052 239274099 -3390254 - MLT1C LTR MaLR -356 111 62 230 161 0 18 chr1 239274099 239274155 -3390198 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 343 317 114 12 chr1 239275301 239275468 -3388885 + MIR SINE MIR 73 256 -6 24 67 0 0 chr1 239276093 239276138 -3388215 + AT_rich Low_complexity Low_complexity 1 45 0 2271 90 0 0 chr1 239276174 239276473 -3387880 + AluSx SINE Alu 1 299 -13 383 242 45 30 chr1 239277056 239277188 -3387165 - MIR3 SINE MIR -69 139 6 186 103 0 0 chr1 239277432 239277461 -3386892 + (A)n Simple_repeat Simple_repeat 1 29 0 4260 162 28 22 chr1 239277790 239277864 -3386489 - L1MB3 LINE L1 0 6183 6111 1625 121 0 4 chr1 239277864 239278095 -3386258 - MER30 DNA MER1_type 0 230 1 4260 162 28 22 chr1 239278095 239278836 -3385517 - L1MB3 LINE L1 -72 6111 5363 422 234 0 105 chr1 239278836 239278960 -3385393 + MIR SINE MIR 79 189 -73 243 0 0 0 chr1 239279019 239279046 -3385307 + (TG)n Simple_repeat Simple_repeat 2 28 0 2294 88 3 0 chr1 239279046 239279354 -3384999 - AluSp SINE Alu -4 309 1 31 58 0 0 chr1 239279362 239279414 -3384939 + AT_rich Low_complexity Low_complexity 1 52 0 327 176 20 10 chr1 239279434 239279536 -3384817 + (TA)n Simple_repeat Simple_repeat 2 104 0 215 329 129 0 chr1 239280462 239280547 -3383806 + MIR SINE MIR 16 111 -97 508 233 95 0 chr1 239280785 239280901 -3383452 - MIR SINE MIR 0 262 136 688 219 39 7 chr1 239280925 239281080 -3383273 - AluJo SINE Alu -31 281 122 1800 107 0 0 chr1 239282502 239282746 -3381607 + AluSx SINE Alu 62 305 -7 406 191 0 127 chr1 239282754 239282880 -3381473 - L1MA7 LINE L1 -165 6126 6017 2124 125 0 0 chr1 239283639 239283952 -3380401 - AluSq SINE Alu 0 313 1 950 177 41 32 chr1 239283988 239284208 -3380145 + AluJo SINE Alu 84 305 -7 2263 112 3 0 chr1 239285584 239285879 -3378474 - AluSq SINE Alu -17 296 1 3573 204 79 76 chr1 239286390 239286680 -3377673 + Charlie1a DNA MER1_type 1 289 -2472 2063 96 51 7 chr1 239286680 239286972 -3377381 - AluSc SINE Alu -4 305 1 3573 204 79 76 chr1 239286972 239287274 -3377079 + Charlie1a DNA MER1_type 289 589 -2172 712 215 0 15 chr1 239287274 239287409 -3376944 + FLAM_A SINE Alu 1 133 0 3573 204 79 76 chr1 239287409 239287920 -3376433 + Charlie1a DNA MER1_type 589 1108 -347 682 251 18 12 chr1 239287976 239288147 -3376206 + FRAM SINE Alu 1 172 -4 638 139 100 39 chr1 239288147 239288327 -3376026 + Charlie1a DNA MER1_type 1178 1368 -87 486 247 34 28 chr1 239288354 239288532 -3375821 + HAL1 LINE L1 1854 2032 -475 376 240 0 0 chr1 239288564 239288639 -3375714 + Charlie1a DNA MER1_type 1381 1455 0 264 242 78 92 chr1 239288651 239288804 -3375549 - HAL1 LINE L1 -238 2269 2119 4157 260 80 35 chr1 239288875 239289353 -3375000 - HAL1 LINE L1 -828 1679 1224 2284 113 3 0 chr1 239289353 239289654 -3374699 + AluSq SINE Alu 1 302 -11 4157 260 80 35 chr1 239289654 239290781 -3373572 - HAL1 LINE L1 -1283 1224 2 2076 152 0 0 chr1 239290805 239291114 -3373239 + AluSx SINE Alu 1 309 -3 2316 105 0 6 chr1 239291142 239291457 -3372896 - AluSq SINE Alu 0 313 1 390 262 48 10 chr1 239292044 239292147 -3372206 - MER63 DNA MER1_type -329 733 1 389 269 52 8 chr1 239292269 239292403 -3371950 + MIR SINE MIR 6 145 -117 1465 92 19 14 chr1 239292920 239293127 -3371226 + AluSq SINE Alu 104 311 -2 1429 135 5 9 chr1 239293426 239293641 -3370712 - AluJb SINE Alu -15 297 84 2270 116 0 0 chr1 239293677 239293978 -3370375 - AluSp SINE Alu -12 301 1 195 100 0 0 chr1 239294059 239294089 -3370264 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 273 339 11 28 chr1 239294119 239294296 -3370057 + L3 LINE CR1 1165 1338 -239 365 346 87 0 chr1 239294412 239294597 -3369756 + L3 LINE CR1 1345 1545 -32 67 34 0 0 chr1 239295179 239295267 -3369086 + AT_rich Low_complexity Low_complexity 1 88 0 759 242 160 49 chr1 239295277 239295645 -3368708 - L1MC4 LINE L1 -23 8019 7611 196 298 0 0 chr1 239296327 239296384 -3367969 - MIR SINE MIR -121 141 85 1658 137 15 55 chr1 239297008 239297337 -3367016 + MER33 DNA MER1_type 5 320 -4 2260 81 0 24 chr1 239298050 239298388 -3365965 + AluSx SINE Alu 1 312 0 1793 153 0 14 chr1 239299434 239299715 -3364638 - AluJo SINE Alu -14 298 22 269 252 10 0 chr1 239300003 239300106 -3364247 + (TG)n Simple_repeat Simple_repeat 2 105 0 22 0 0 0 chr1 239300674 239300696 -3363657 + AT_rich Low_complexity Low_complexity 1 22 0 236 279 0 29 chr1 239301931 239301999 -3362354 - MIR SINE MIR -137 125 60 196 305 0 0 chr1 239302751 239302810 -3361543 - L2 LINE L2 -16 3256 3198 2352 115 0 0 chr1 239303242 239303554 -3360799 - AluSx SINE Alu 0 312 1 303 321 14 13 chr1 239303856 239303988 -3360365 + CT-rich Low_complexity Low_complexity 1 225 0 187 336 92 15 chr1 239304234 239304365 -3359988 - L2 LINE L2 -42 3230 3090 2479 94 0 0 chr1 239304813 239305121 -3359232 - AluSx SINE Alu -4 308 1 392 233 0 0 chr1 239305335 239305425 -3358928 + MIR SINE MIR 155 244 -18 1769 149 51 4 chr1 239306927 239307202 -3357151 - AluJb SINE Alu -24 288 1 1087 113 8 13 chr1 239307209 239307448 -3356905 - L1MB3 LINE L1 -1 6182 5891 2340 104 0 7 chr1 239309846 239310153 -3354200 + AluSg SINE Alu 1 305 -5 255 276 0 0 chr1 239310351 239310438 -3353915 + MIR SINE MIR 57 143 -119 301 339 8 17 chr1 239311409 239311527 -3352826 + MIR SINE MIR 35 151 -111 202 189 0 94 chr1 239312269 239312322 -3352031 + L2 LINE L2 3224 3271 -1 2262 80 29 35 chr1 239312450 239312761 -3351592 + AluSp SINE Alu 1 309 -4 409 300 70 61 chr1 239312872 239313199 -3351154 - L2 LINE L2 -4 3268 2939 278 261 81 27 chr1 239313858 239313969 -3350384 + MIR3 SINE MIR 91 207 -1 651 204 61 22 chr1 239316328 239316509 -3347844 - MER20 DNA MER1_type 0 219 32 340 287 131 0 chr1 239316827 239316949 -3347404 - MIR3 SINE MIR -24 184 47 277 238 59 59 chr1 239317121 239317222 -3347131 + MIR SINE MIR 116 216 -46 219 313 172 49 chr1 239317746 239318072 -3346281 + L3 LINE CR1 1205 1570 -7 2232 132 3 0 chr1 239319274 239319584 -3344769 + AluSx SINE Alu 1 311 -1 334 368 50 12 chr1 239319664 239319906 -3344447 - MIR SINE MIR -8 254 4 1733 171 3 32 chr1 239320283 239320598 -3343755 - AluJo SINE Alu -6 306 1 1805 111 30 15 chr1 239320611 239320873 -3343480 - AluSx SINE Alu -17 295 30 352 156 39 0 chr1 239320875 239320952 -3343401 - L1MA8 LINE L1 -3 6288 6209 497 153 174 5 chr1 239321068 239321258 -3343095 + MER5C DNA MER1_type 15 324 0 2368 80 3 0 chr1 239321852 239322151 -3342202 - AluY SINE Alu -11 300 1 248 200 17 0 chr1 239322620 239322680 -3341673 + CT-rich Low_complexity Low_complexity 4 64 0 2310 100 3 3 chr1 239323772 239324081 -3340272 + AluSp SINE Alu 1 309 -4 299 359 8 0 chr1 239324339 239324467 -3339886 + MER91A DNA MER1_type 1 129 -67 391 287 73 0 chr1 239325492 239325628 -3338725 + MIR SINE MIR 46 191 -71 185 337 53 11 chr1 239325909 239326004 -3338349 - L2 LINE L2 -29 3284 3186 2181 129 0 3 chr1 239326051 239326361 -3337992 - AluSx SINE Alu -3 309 1 1578 176 0 20 chr1 239326833 239327128 -3337225 + AluJo SINE Alu 6 294 -18 691 247 68 0 chr1 239327133 239327352 -3337001 - MIR SINE MIR -1 261 28 265 231 176 37 chr1 239327357 239327465 -3336888 + L2 LINE L2 3191 3313 0 2259 96 0 10 chr1 239327637 239327794 -3336559 - AluSg SINE Alu -22 288 134 2312 98 0 3 chr1 239327794 239328091 -3336262 - AluSg SINE Alu -14 296 1 2259 96 0 10 chr1 239328091 239328224 -3336129 - AluSg SINE Alu -176 134 1 471 268 118 20 chr1 239328272 239328549 -3335804 + L2 LINE L2 2750 3074 -239 2222 116 0 6 chr1 239329630 239329941 -3334412 + AluSg SINE Alu 1 309 -1 1289 247 92 22 chr1 239330940 239331385 -3332968 + LTR16C LTR ERVL 3 478 -13 1320 67 0 0 chr1 239331435 239331615 -3332738 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 412 233 103 0 chr1 239331625 239331741 -3332612 - L2 LINE L2 -7 3265 3138 365 325 43 43 chr1 239331858 239332046 -3332307 + L2 LINE L2 3122 3309 -4 2355 91 0 3 chr1 239332337 239332634 -3331719 + AluSg SINE Alu 1 296 -14 1522 148 148 7 chr1 239332918 239333209 -3331144 - MLT2C1 LTR ERVL -64 333 2 2191 118 14 0 chr1 239333333 239333629 -3330724 - AluSx SINE Alu -12 300 1 1367 219 78 55 chr1 239334954 239335497 -3328856 + L1ME1 LINE L1 5613 6322 -12 2135 145 3 0 chr1 239335508 239335818 -3328535 + AluJb SINE Alu 1 311 -1 2401 44 0 0 chr1 239336387 239336682 -3327671 + AluY SINE Alu 1 295 -16 417 226 171 50 chr1 239338492 239338673 -3325680 - MIR SINE MIR -19 243 41 571 193 28 122 chr1 239338850 239339063 -3325290 - LTR16A1 LTR ERVL 0 457 265 392 200 89 168 chr1 239341684 239341964 -3322389 + L1MC5 LINE L1 7670 7927 -34 1853 198 12 3 chr1 239342333 239342676 -3321677 - MER7A DNA MER2_type 0 346 3 1587 177 31 81 chr1 239343726 239343903 -3320450 + MLT1A1 LTR MaLR 1 185 -180 2523 167 12 38 chr1 239343903 239344401 -3319952 + MER66B LTR ERV1 2 486 0 1587 177 31 81 chr1 239344401 239344537 -3319816 + MLT1A1 LTR MaLR 185 294 -71 2133 114 0 7 chr1 239344537 239344845 -3319508 - AluSx SINE Alu -6 306 1 1587 177 31 81 chr1 239344845 239344914 -3319439 + MLT1A1 LTR MaLR 294 365 0 249 299 31 31 chr1 239346879 239346976 -3317377 + MIR SINE MIR 49 145 -63 1096 308 112 24 chr1 239347373 239347919 -3316434 - L1M4 LINE L1 -2920 3226 2633 2203 97 10 6 chr1 239347924 239348235 -3316118 - AluSx SINE Alu 0 312 1 4522 170 48 25 chr1 239348257 239349505 -3314848 - L1MB4 LINE L1 0 6180 4914 1087 170 9 35 chr1 239349618 239349847 -3314506 - MER96B DNA MER1_type? -194 223 1 335 300 90 40 chr1 239349850 239350050 -3314303 - L1M4 LINE L1 -3598 2548 2339 2235 94 3 0 chr1 239351559 239351867 -3312486 + AluSc SINE Alu 1 309 0 935 261 158 9 chr1 239352316 239352765 -3311588 - L1ME4a LINE L1 -32 6089 5574 437 317 111 27 chr1 239352768 239353030 -3311323 - L1ME4a LINE L1 -699 5543 5260 2102 126 0 0 chr1 239353191 239353501 -3310852 - AluSx SINE Alu -2 310 1 343 304 101 9 chr1 239354095 239354312 -3310041 - L1ME LINE L1 -358 5804 5568 683 223 177 14 chr1 239354378 239354593 -3309760 - MIR SINE MIR -10 252 3 189 283 111 20 chr1 239354706 239354805 -3309548 - MIR SINE MIR -67 141 34 1939 109 55 0 chr1 239356308 239356601 -3307752 - AluSx SINE Alu -3 309 1 212 0 36 0 chr1 239356614 239356642 -3307711 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 798 221 87 14 chr1 239356689 239356897 -3307456 + MER58A DNA MER1_type 1 223 -1 684 196 112 0 chr1 239357632 239357775 -3306578 - AluJb SINE Alu -11 301 143 1500 155 34 68 chr1 239358167 239358490 -3305863 + AluJo SINE Alu 1 312 0 283 250 167 10 chr1 239359046 239359142 -3305211 - MIR SINE MIR -131 131 21 261 0 0 0 chr1 239359182 239359211 -3305142 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 580 271 35 0 chr1 239359540 239359684 -3304669 - MIR SINE MIR -58 204 56 690 189 0 0 chr1 239360668 239360843 -3303510 + (TG)n Simple_repeat Simple_repeat 1 175 0 643 162 0 29 chr1 239360857 239361030 -3303323 + (TG)n Simple_repeat Simple_repeat 1 168 0 2340 48 0 3 chr1 239361309 239361603 -3302750 - AluY SINE Alu -16 295 3 416 281 65 0 chr1 239362201 239362340 -3302013 - LTR33 LTR ERVL -354 167 20 189 0 0 0 chr1 239362514 239362535 -3301818 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2134 101 23 7 chr1 239362964 239363271 -3301082 + AluSq SINE Alu 1 312 -1 2127 82 43 0 chr1 239363933 239364215 -3300138 + AluSx SINE Alu 1 294 -18 252 0 0 0 chr1 239364995 239365023 -3299330 + (GA)n Simple_repeat Simple_repeat 2 29 0 247 295 21 0 chr1 239365242 239365337 -3299016 + (TA)n Simple_repeat Simple_repeat 1 97 0 2491 46 0 0 chr1 239366751 239367053 -3297300 - AluY SINE Alu -9 302 1 2018 115 0 10 chr1 239367469 239367757 -3296596 - AluSx SINE Alu -27 285 1 326 229 64 115 chr1 239368013 239368118 -3296235 - L2 LINE L2 -4 3309 3213 2360 81 0 0 chr1 239368118 239368415 -3295938 - AluSq SINE Alu -16 297 1 326 229 64 115 chr1 239368415 239368466 -3295887 - L2 LINE L2 -100 3213 3161 189 289 19 0 chr1 239368563 239368615 -3295738 + L2 LINE L2 3261 3313 0 966 225 5 28 chr1 239368708 239368921 -3295432 - MER46A DNA MER2_type -7 229 22 250 347 123 18 chr1 239369047 239369217 -3295136 + L2 LINE L2 2983 3170 -102 2302 162 8 39 chr1 239370203 239370434 -3293919 - L1MA4 LINE L1 -4 6296 6060 2134 107 0 3 chr1 239370434 239370732 -3293621 - AluY SINE Alu -14 297 1 2150 98 16 3 chr1 239370732 239371037 -3293316 - AluSx SINE Alu -2 310 1 2302 162 8 39 chr1 239371037 239371272 -3293081 - L1MA4 LINE L1 -238 6062 5843 376 155 0 0 chr1 239371817 239371882 -3292471 + AluJ/FRAM SINE Alu 229 282 -20 3868 165 41 41 chr1 239371888 239372763 -3291590 + L1MB7 LINE L1 5212 6183 -1 1768 129 37 0 chr1 239372822 239373150 -3291203 - AluJb SINE Alu 0 338 1 1102 248 63 86 chr1 239373610 239374168 -3290185 - L2 LINE L2 -1 3312 2771 2193 210 59 8 chr1 239374173 239374683 -3289670 - L1MB7 LINE L1 -19 6165 5630 1871 255 92 5 chr1 239374696 239374755 -3289598 - L2 LINE L2 -538 2776 2724 2212 49 42 0 chr1 239374755 239375039 -3289314 - AluY SINE Alu -15 296 1 1871 255 92 5 chr1 239375039 239375531 -3288822 - L2 LINE L2 -590 2724 2177 666 275 141 41 chr1 239376080 239376306 -3288047 + L3 LINE CR1 1147 1349 -228 1510 187 52 0 chr1 239376306 239376424 -3287929 + AluJb SINE Alu 1 111 -201 203 0 37 0 chr1 239376424 239376451 -3287902 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1510 187 52 0 chr1 239376451 239376621 -3287732 + AluJb SINE Alu 111 304 -8 666 275 141 41 chr1 239376621 239376783 -3287570 + L3 LINE CR1 1349 1574 -3 362 221 32 53 chr1 239377159 239377254 -3287099 - MIR3 SINE MIR -6 202 110 181 320 0 0 chr1 239377350 239377400 -3286953 - L2 LINE L2 -11 3261 3212 2039 109 7 10 chr1 239378410 239378713 -3285640 - AluSg SINE Alu -8 302 1 402 286 228 10 chr1 239379554 239379760 -3284593 - MIR SINE MIR -4 258 8 417 119 24 12 chr1 239381008 239381092 -3283261 + CT-rich Low_complexity Low_complexity 1 85 0 252 0 0 0 chr1 239381093 239381121 -3283232 + (TTA)n Simple_repeat Simple_repeat 2 29 0 316 300 53 36 chr1 239381262 239381509 -3282844 + L1PB4 LINE L1 5713 5963 -193 * 2278 144 40 2 chr1 239381296 239381700 -3282653 + L1MB4 LINE L1 5741 6159 -21 2250 91 0 0 chr1 239381711 239382009 -3282344 - AluSx SINE Alu -14 298 1 267 281 146 0 chr1 239382875 239382957 -3281396 - MIR SINE MIR -56 206 113 1252 164 0 18 chr1 239382986 239383211 -3281142 - AluJo SINE Alu -6 306 86 541 237 8 0 chr1 239383621 239383739 -3280614 - MER45A DNA AcHobo 0 178 60 1575 175 27 24 chr1 239383927 239384090 -3280263 - AluJo SINE Alu -4 298 132 1912 99 3 77 chr1 239384090 239384413 -3279940 - AluSx SINE Alu -13 299 1 1575 175 27 24 chr1 239384413 239384546 -3279807 - AluJo SINE Alu -170 132 1 615 300 30 11 chr1 239386135 239386386 -3277967 - MIR SINE MIR 0 262 8 2500 76 0 3 chr1 239386632 239386936 -3277417 - AluSc SINE Alu -6 303 1 2048 116 17 3 chr1 239387955 239388247 -3276106 + AluSq SINE Alu 5 300 -13 321 301 3 3 chr1 239388282 239388415 -3275938 + MIR SINE MIR 73 206 -2 2336 93 0 3 chr1 239389101 239389402 -3274951 - AluSc SINE Alu -7 302 3 2188 95 0 7 chr1 239390347 239390657 -3273696 + AluSq SINE Alu 1 308 0 802 288 124 28 chr1 239390892 239391081 -3273272 + L1M4c LINE L1 800 969 -5455 1880 148 47 7 chr1 239391081 239391378 -3272975 + AluJb SINE Alu 1 309 -3 802 288 124 28 chr1 239391378 239391657 -3272696 + L1M4c LINE L1 969 1220 -5204 1680 158 0 77 chr1 239391657 239392023 -3272330 - L1MA5 LINE L1 0 6300 5963 802 288 124 28 chr1 239392023 239392483 -3271870 + L1M4c LINE L1 1220 1984 -4440 862 269 83 32 chr1 239392682 239393248 -3271105 + L1M4c LINE L1 2042 2636 -3927 1815 104 4 4 chr1 239393253 239393494 -3270859 + AluSp SINE Alu 58 298 -15 1033 248 168 7 chr1 239393531 239393942 -3270411 + L1M4c LINE L1 2724 3200 -3182 2115 107 0 0 chr1 239394071 239394341 -3270012 - AluSg SINE Alu -14 296 27 222 62 0 0 chr1 239395571 239395603 -3268750 + (TG)n Simple_repeat Simple_repeat 1 32 0 296 327 49 19 chr1 239397331 239397536 -3266817 - MIR SINE MIR -20 242 32 * 866 285 0 0 chr1 239397505 239397719 -3266634 + MIR SINE MIR 28 241 -21 2359 96 3 13 chr1 239398572 239398885 -3265468 + AluSg SINE Alu 1 310 0 2522 50 10 0 chr1 239399187 239399484 -3264869 - AluSp SINE Alu -13 300 1 579 173 0 0 chr1 239400625 239400735 -3263618 + CT-rich Low_complexity Low_complexity 4 113 0 1630 154 35 56 chr1 239400746 239401065 -3263288 - AluJb SINE Alu 0 312 1 2321 92 3 0 chr1 239401269 239401563 -3262790 - AluSx SINE Alu -17 295 1 2064 119 3 0 chr1 239401718 239402003 -3262350 - AluSx SINE Alu -19 293 8 2006 130 13 10 chr1 239403005 239403305 -3261048 - AluSq SINE Alu -12 301 1 1159 240 87 45 chr1 239403560 239403985 -3260368 - LTR16A LTR ERVL -1 449 7 228 352 23 8 chr1 239404285 239404413 -3259940 + MIR3 SINE MIR 9 138 -70 219 69 0 0 chr1 239404515 239404544 -3259809 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2204 60 0 0 chr1 239404566 239404834 -3259519 - AluY SINE Alu -12 299 32 227 276 49 57 chr1 239405618 239405741 -3258612 - L2 LINE L2 -209 3063 2942 249 250 148 28 chr1 239405920 239406028 -3258325 - MER5A DNA MER1_type 0 189 69 455 193 0 9 chr1 239406902 239407016 -3257337 + CT-rich Low_complexity Low_complexity 2 114 0 216 0 0 0 chr1 239407910 239407934 -3256419 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1126 156 38 14 chr1 239410352 239410564 -3253789 + L1MA8 LINE L1 6075 6291 0 2144 96 3 20 chr1 239410572 239410889 -3253464 + AluSx SINE Alu 3 312 0 22 35 0 0 chr1 239410910 239410939 -3253414 + AT_rich Low_complexity Low_complexity 1 29 0 276 245 122 0 chr1 239411135 239411233 -3253120 + MIR SINE MIR 124 233 -29 245 275 46 37 chr1 239411346 239411455 -3252898 + MIR3 SINE MIR 3 112 -96 1818 117 59 21 chr1 239413409 239413699 -3250654 + AluSx SINE Alu 1 301 -11 234 329 0 0 chr1 239413882 239413958 -3250395 - L2 LINE L2 -13 3259 3184 2316 107 0 0 chr1 239414195 239414494 -3249859 - AluSg1 SINE Alu -9 300 2 248 200 0 0 chr1 239415089 239415139 -3249214 - MIR3 SINE MIR -3 205 156 2239 137 0 0 chr1 239415597 239415903 -3248450 + AluSx SINE Alu 1 306 -6 1736 130 130 3 chr1 239415911 239416219 -3248134 - MER7A DNA MER2_type -1 345 1 26 64 0 0 chr1 239416359 239416406 -3247947 + AT_rich Low_complexity Low_complexity 1 47 0 297 0 0 0 chr1 239416441 239416474 -3247879 + (GA)n Simple_repeat Simple_repeat 1 33 0 379 623 6 0 chr1 239416832 239416999 -3247354 + (TCCA)n Simple_repeat Simple_repeat 2 169 0 278 287 168 0 chr1 239416999 239417100 -3247253 - L2 LINE L2 0 3313 3196 348 169 0 28 chr1 239417208 239417279 -3247074 + MLT1A1 LTR MaLR 3 71 -294 2572 50 0 13 chr1 239417401 239417701 -3246652 + AluY SINE Alu 1 296 -15 250 393 28 0 chr1 239418080 239418187 -3246166 - L2 LINE L2 -63 3209 3100 2551 49 0 16 chr1 239418209 239418515 -3245838 - AluY SINE Alu -10 301 1 692 270 76 21 chr1 239419303 239419540 -3244813 - MIR SINE MIR 0 262 13 2108 166 17 8 chr1 239419788 239420150 -3244203 - MLT1A1 LTR MaLR 0 365 1 28 48 0 0 chr1 239420368 239420410 -3243943 + AT_rich Low_complexity Low_complexity 1 42 0 250 266 12 33 chr1 239420555 239420727 -3243626 - MIR SINE MIR -10 252 26 325 313 192 19 chr1 239421100 239421512 -3242841 + L2 LINE L2 1759 2241 -1073 2661 52 0 0 chr1 239423871 239424179 -3240174 - AluY SINE Alu -3 308 1 22 0 0 0 chr1 239425906 239425928 -3238425 + AT_rich Low_complexity Low_complexity 1 22 0 4670 121 0 10 chr1 239426061 239426955 -3237398 + L1MA3 LINE L1 5034 5919 -386 1495 163 60 30 chr1 239428161 239428462 -3235891 + AluJo SINE Alu 1 310 -2 2622 40 0 0 chr1 239428580 239428876 -3235477 - AluY SINE Alu 0 311 16 2320 110 0 0 chr1 239430508 239430807 -3233546 - AluSg SINE Alu -11 299 1 2171 120 3 3 chr1 239431128 239431429 -3232924 - AluSx SINE Alu -11 301 1 236 362 37 43 chr1 239431872 239432060 -3232293 - L3 LINE CR1 -63 1514 1328 314 232 40 10 chr1 239432195 239432294 -3232059 - MIR SINE MIR -44 218 117 215 295 0 0 chr1 239432659 239432720 -3231633 - L3b LINE CR1 -346 1237 1177 214 258 0 121 chr1 239432725 239432849 -3231504 - L2 LINE L2 -80 3233 3125 1727 256 89 35 chr1 239432897 239433460 -3230893 - MLT1G1 LTR MaLR 0 595 3 3741 247 98 13 chr1 239433461 239434827 -3229526 - L2 LINE L2 -254 3059 1583 2447 80 0 0 chr1 239435998 239436299 -3228054 - AluSx SINE Alu -11 301 1 1798 163 0 0 chr1 239438417 239438687 -3225666 + AluJo SINE Alu 1 270 -42 388 141 0 0 chr1 239439085 239439149 -3225204 - L1MB2 LINE L1 -2 6169 6106 2537 75 0 0 chr1 239440014 239440321 -3224032 + AluSg SINE Alu 1 307 -3 218 310 14 14 chr1 239440844 239440915 -3223438 - MIR3 SINE MIR -29 179 109 2367 104 0 0 chr1 239441449 239441747 -3222606 - AluSx SINE Alu -14 298 1 399 276 35 52 chr1 239441749 239441865 -3222488 - L2 LINE L2 -11 3302 3189 924 94 0 0 chr1 239442538 239442693 -3221660 - AluSp/q SINE Alu 0 330 176 2315 90 3 7 chr1 239443654 239443953 -3220400 + AluSx SINE Alu 1 298 -14 241 297 55 22 chr1 239444511 239444602 -3219751 + L2 LINE L2 3133 3226 -46 306 303 0 0 chr1 239444893 239444969 -3219384 - MIR3 SINE MIR -38 170 95 2359 90 10 3 chr1 239445091 239445391 -3218962 - AluSq SINE Alu -11 302 1 195 162 0 0 chr1 239445459 239445496 -3218857 + (TG)n Simple_repeat Simple_repeat 2 38 0 2215 88 7 0 chr1 239446134 239446407 -3217946 - AluSx SINE Alu -16 296 22 1692 170 14 3 chr1 239447410 239447692 -3216661 - AluJb SINE Alu -27 285 1 547 302 59 43 chr1 239448115 239448420 -3215933 + L2 LINE L2 2988 3297 -16 1530 157 129 36 chr1 239448423 239448464 -3215889 - MLT2D LTR ERVL 0 414 378 306 0 0 0 chr1 239448464 239448498 -3215855 + (TG)n Simple_repeat Simple_repeat 1 34 0 1530 157 129 36 chr1 239448498 239448820 -3215533 - MLT2D LTR ERVL -36 378 17 2061 108 52 0 chr1 239448943 239449229 -3215124 - AluSx SINE Alu -11 301 1 201 224 35 35 chr1 239449307 239449365 -3214988 - MIR SINE MIR -126 136 79 330 320 171 22 chr1 239449417 239449645 -3214708 - MIR SINE MIR 0 262 1 237 333 146 0 chr1 239450752 239450848 -3213505 - L2 LINE L2 0 3272 3163 734 114 5 49 chr1 239452532 239452716 -3211637 + (TCC)n Simple_repeat Simple_repeat 3 178 0 1711 192 6 19 chr1 239452725 239453038 -3211315 - AluJb SINE Alu -1 311 3 625 231 15 8 chr1 239453046 239453176 -3211177 - FLAM_A SINE Alu -2 131 1 463 308 8 8 chr1 239453724 239453857 -3210496 + MIR SINE MIR 59 191 -71 279 298 174 23 chr1 239454634 239454892 -3209461 + L2 LINE L2 2828 3124 -148 27 0 0 26 chr1 239455387 239455403 -3208950 + AT_rich Low_complexity Low_complexity 1 16 -21 1720 162 32 3 chr1 239455403 239455687 -3208666 + AluJb SINE Alu 1 292 -20 27 0 0 26 chr1 239455687 239455708 -3208645 + AT_rich Low_complexity Low_complexity 16 37 0 2118 113 3 16 chr1 239455741 239456050 -3208303 - AluSg SINE Alu -5 305 1 1003 98 23 15 chr1 239456051 239456184 -3208169 - AluJo SINE Alu -178 134 1 180 268 79 55 chr1 239456557 239456684 -3207669 - L2 LINE L2 -2 3311 3182 211 289 0 0 chr1 239457865 239457910 -3206443 - MIR SINE MIR -33 229 185 216 125 0 0 chr1 239458040 239458072 -3206281 - MIR SINE MIR -67 141 110 1783 153 0 27 chr1 239459050 239459345 -3205008 - AluJo SINE Alu -19 293 7 238 193 45 91 chr1 239459356 239459444 -3204909 + L2 LINE L2 3186 3269 -3 200 307 220 27 chr1 239459602 239459898 -3204455 + L2 LINE L2 1432 1784 -1530 564 168 0 28 chr1 239459985 239460092 -3204261 + MER7A DNA MER2_type 17 118 -228 291 313 35 17 chr1 239460472 239460587 -3203766 + L2 LINE L2 2866 2982 -290 1586 198 68 28 chr1 239461029 239461353 -3203000 - MER1B DNA MER1_type 0 337 1 618 129 43 0 chr1 239461385 239461478 -3202875 + FRAM SINE Alu 57 153 -23 2259 114 0 13 chr1 239461613 239461928 -3202425 - AluSx SINE Alu -1 311 1 2871 120 24 0 chr1 239462103 239462519 -3201834 - MSTB LTR MaLR 0 426 1 2077 113 25 0 chr1 239462986 239463269 -3201084 + AluSg SINE Alu 1 290 -20 2011 96 51 54 chr1 239464235 239464548 -3199805 + AluSx SINE Alu 1 312 0 1721 171 38 17 chr1 239464567 239464860 -3199493 + AluJo SINE Alu 1 299 -13 1776 128 12 8 chr1 239465682 239465974 -3198379 + AluSx SINE Alu 24 316 0 1189 152 0 0 chr1 239465974 239466145 -3198208 + AluJb SINE Alu 132 302 -10 2689 49 0 3 chr1 239466261 239466569 -3197784 - AluY SINE Alu -4 307 1 347 305 74 39 chr1 239466634 239466837 -3197516 + L2 LINE L2 2437 2646 -668 195 139 0 0 chr1 239467149 239467185 -3197168 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 23 54 0 0 chr1 239468933 239468970 -3195383 + AT_rich Low_complexity Low_complexity 1 37 0 2207 123 0 3 chr1 239469575 239469885 -3194468 + AluSg SINE Alu 1 309 -1 461 152 54 11 chr1 239470045 239470137 -3194216 - Tigger7 DNA MER2_type -1 2586 2491 1467 209 4 0 chr1 239470139 239470402 -3193951 - Tigger7 DNA MER2_type -2222 265 2 2273 89 3 3 chr1 239470487 239470778 -3193575 - AluSx SINE Alu -21 291 1 2015 39 0 9 chr1 239471188 239471421 -3192932 - AluY SINE Alu -2 309 79 1921 116 0 12 chr1 239471521 239471779 -3192574 + AluSx SINE Alu 54 308 -4 256 263 0 0 chr1 239473372 239473429 -3190924 - MIR3 SINE MIR -28 180 124 521 280 45 0 chr1 239473439 239473596 -3190757 - MER20 DNA MER1_type 0 219 56 211 300 43 29 chr1 239473597 239473667 -3190686 - MIR SINE MIR -118 90 20 1118 138 0 18 chr1 239475627 239475794 -3188559 + FRAM SINE Alu 1 164 -2 2421 83 7 3 chr1 239475802 239475929 -3188424 + AluSp SINE Alu 1 126 -187 293 0 27 0 chr1 239475929 239475966 -3188387 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 2421 83 7 3 chr1 239475966 239476139 -3188214 + AluSp SINE Alu 126 302 -11 338 202 21 11 chr1 239476861 239476955 -3187398 - LTR33 LTR ERVL -403 118 24 295 98 33 0 chr1 239477665 239477726 -3186627 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 817 204 13 6 chr1 239478040 239478197 -3186156 + AluJb SINE Alu 136 293 -19 549 0 0 0 chr1 239478198 239478259 -3186094 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 374 282 68 37 chr1 239478948 239479120 -3185233 + MIR3 SINE MIR 3 185 -77 1996 175 103 0 chr1 239480294 239480682 -3183671 + MSTA LTR MaLR 1 428 0 874 142 14 0 chr1 239481355 239481496 -3182857 + MER5A DNA MER1_type 1 143 -46 1547 179 70 7 chr1 239482278 239482449 -3181904 - AluJo SINE Alu -5 307 109 237 33 0 0 chr1 239482449 239482479 -3181874 + (TG)n Simple_repeat Simple_repeat 2 31 0 1547 179 70 7 chr1 239482479 239482592 -3181761 - AluJo SINE Alu -203 109 5 191 291 0 89 chr1 239482604 239482683 -3181670 - MIR SINE MIR -80 182 111 2382 11 15 11 chr1 239482946 239483215 -3181138 + AluYb8 SINE Alu 38 307 -11 601 261 34 17 chr1 239483219 239483395 -3180958 - MIR SINE MIR -6 256 78 426 304 43 19 chr1 239483594 239483755 -3180598 + L2 LINE L2 3149 3313 0 1904 167 7 0 chr1 239486932 239487237 -3177116 + AluJb SINE Alu 1 307 -5 327 280 233 5 chr1 239487415 239487608 -3176745 - MIR SINE MIR -6 256 20 669 289 53 8 chr1 239487630 239487876 -3176477 - MIR SINE MIR 0 262 6 21 0 0 0 chr1 239488750 239488771 -3175582 + AT_rich Low_complexity Low_complexity 1 21 0 29151 85 12 3 chr1 239489479 239494403 -3169950 - L1PA7 LINE L1 0 6154 1186 2158 84 7 0 chr1 239496352 239496627 -3167726 - AluSp SINE Alu -16 297 21 2700 43 0 0 chr1 239496629 239496932 -3167421 - AluY SINE Alu -8 303 1 1370 153 0 31 chr1 239496933 239497161 -3167192 - AluJo SINE Alu -18 294 74 299 165 279 0 chr1 239497285 239497364 -3166989 + AluJ/FLAM SINE Alu 1 101 -201 252 283 71 10 chr1 239497367 239497466 -3166887 - MIR SINE MIR -51 211 107 339 263 144 0 chr1 239497523 239497683 -3166670 + MIR SINE MIR 49 231 -31 22 0 0 0 chr1 239498007 239498029 -3166324 + AT_rich Low_complexity Low_complexity 1 22 0 298 173 0 0 chr1 239498217 239498269 -3166084 + L2 LINE L2 3242 3293 -20 1199 209 132 128 chr1 239499948 239500479 -3163874 - MLT1H LTR MaLR -14 535 3 249 360 14 36 chr1 239501421 239501560 -3162793 - MIR SINE MIR -40 222 87 524 268 37 32 chr1 239501661 239501851 -3162502 + MIR SINE MIR 72 262 0 2422 84 0 10 chr1 239503376 239503684 -3160669 + AluSq SINE Alu 1 305 -8 1635 190 10 10 chr1 239505349 239505649 -3158704 - AluJo SINE Alu -12 300 1 219 305 0 0 chr1 239505717 239505776 -3158577 + CT-rich Low_complexity Low_complexity 2 60 0 852 181 23 0 chr1 239506948 239507119 -3157234 - MER5A DNA MER1_type -14 175 1 432 0 0 0 chr1 239508650 239508698 -3155655 + (TG)n Simple_repeat Simple_repeat 1 48 0 270 0 0 0 chr1 239508697 239508727 -3155626 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1765 143 11 14 chr1 239508727 239509006 -3155347 - AluJo SINE Alu -34 278 1 2164 115 17 0 chr1 239509916 239510211 -3154142 + AluSx SINE Alu 1 300 -12 239 244 63 39 chr1 239510392 239510407 -3153946 - L1MA10 LINE L1 -2 6332 6318 1090 212 82 29 chr1 239510407 239510723 -3153630 - L1ME1 LINE L1 -5 6161 5829 2282 97 0 13 chr1 239510769 239511068 -3153285 - AluSg SINE Alu -15 295 1 2139 120 18 9 chr1 239512910 239513243 -3151110 - MER46B DNA MER2_type -25 211 1 1844 110 0 11 chr1 239513538 239513834 -3150519 - AluSx SINE Alu 0 317 25 228 277 0 0 chr1 239514516 239514563 -3149790 + polypurine Low_complexity Low_complexity 2 48 0 325 48 0 0 chr1 239515669 239515711 -3148642 - AluS SINE Alu -215 88 47 1582 88 13 35 chr1 239515711 239515937 -3148416 + AluSq SINE Alu 85 305 -8 2378 97 3 0 chr1 239515943 239516254 -3148099 + AluSx SINE Alu 1 312 0 1988 136 0 7 chr1 239516718 239517013 -3147340 - AluJb SINE Alu -19 293 1 730 230 0 17 chr1 239517334 239517508 -3146845 + MER5B DNA MER1_type 1 171 -7 347 322 87 0 chr1 239517570 239517753 -3146600 + MIR SINE MIR 50 248 -14 274 284 86 0 chr1 239519259 239519340 -3145013 + MIR SINE MIR 14 101 -161 219 88 0 0 chr1 239519340 239519374 -3144979 + (T)n Simple_repeat Simple_repeat 1 34 0 1480 246 22 51 chr1 239519380 239519855 -3144498 - L1ME1 LINE L1 -5 6161 5700 1828 129 136 0 chr1 239519855 239520172 -3144181 + MER46B DNA MER2_type 2 236 0 1480 246 22 51 chr1 239520172 239520203 -3144150 - L1ME1 LINE L1 -466 5700 5670 1017 148 119 19 chr1 239520205 239520514 -3143839 + MSTA LTR MaLR 3 428 0 3281 212 66 53 chr1 239520614 239521780 -3142573 - L1ME1 LINE L1 -535 5631 4460 2724 128 35 50 chr1 239521807 239522345 -3142008 - L1MA4A LINE L1 -1 6302 5773 3910 161 34 24 chr1 239522345 239523640 -3140713 - L1MA4A LINE L1 -460 6545 5238 * 5704 97 34 7 chr1 239523636 239524499 -3139854 + L1PA8 LINE L1 2810 3695 -2451 1582 107 12 41 chr1 239524503 239524746 -3139607 + AluSq SINE Alu 1 236 -77 10454 90 26 1 chr1 239524747 239527078 -3137275 + L1PA8 LINE L1 3797 6176 0 8673 206 58 17 chr1 239527078 239528937 -3135416 - L1MA4A LINE L1 -1603 5245 3239 2010 158 0 0 chr1 239528937 239529240 -3135113 + AluJb SINE Alu 1 303 -9 8673 206 58 17 chr1 239529240 239530015 -3134338 - L1MA4A LINE L1 -3609 3239 2498 5948 234 58 34 chr1 239530045 239530127 -3134226 - L1M4 LINE L1 -1666 4480 4401 1468 191 24 34 chr1 239530127 239530425 -3133928 - AluJo SINE Alu -17 295 1 5948 234 58 34 chr1 239530425 239531032 -3133321 - L1M4 LINE L1 -1745 4401 3810 1432 189 35 25 chr1 239531032 239531318 -3133035 - AluJo SINE Alu -23 289 1 5948 234 58 34 chr1 239531318 239532709 -3131644 - L1M4 LINE L1 -2336 3810 2349 15044 186 54 19 chr1 239532711 239533172 -3131181 - L1MA5 LINE L1 -4 7715 7272 207 0 0 0 chr1 239533172 239533195 -3131158 + (TG)n Simple_repeat Simple_repeat 2 24 0 15044 186 54 19 chr1 239533195 239536434 -3127919 - L1MA5 LINE L1 -447 7272 3730 198 0 0 0 chr1 239536434 239536456 -3127897 + (TC)n Simple_repeat Simple_repeat 2 23 0 15044 186 54 19 chr1 239536456 239538376 -3125977 - L1MA5 LINE L1 -3989 3730 1878 1286 78 0 6 chr1 239538734 239538901 -3125452 + AluY SINE Alu 145 310 -1 2001 237 77 6 chr1 239539335 239539989 -3124364 - L1MEc LINE L1 -3935 2461 1762 1804 148 57 0 chr1 239541052 239541335 -3123018 + AluJb SINE Alu 1 299 -13 181 259 17 52 chr1 239541933 239541991 -3122362 - MIR SINE MIR -140 122 67 1899 158 22 12 chr1 239544263 239544585 -3119768 + MER1B DNA MER1_type 3 327 -12 396 0 0 0 chr1 239544786 239544830 -3119523 + (TG)n Simple_repeat Simple_repeat 1 44 0 565 228 94 0 chr1 239546159 239546308 -3118045 - MIR SINE MIR -37 225 63 1885 156 0 11 chr1 239546463 239546746 -3117607 + AluJo SINE Alu 3 282 -30 322 290 77 13 chr1 239550153 239550308 -3114045 + L2 LINE L2 2674 2838 -476 213 94 0 0 chr1 239550398 239550430 -3113923 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 246 239 67 90 chr1 239550575 239550709 -3113644 - L1ME2 LINE L1 -71 6162 6032 436 241 108 36 chr1 239550777 239550972 -3113381 - L1ME2 LINE L1 -219 6020 5812 268 233 58 0 chr1 239550978 239551081 -3113272 - L1ME2 LINE L1 -2189 4026 3918 1885 152 28 3 chr1 239551085 239551375 -3112978 - AluJb SINE Alu -15 297 1 221 297 0 0 chr1 239551417 239551481 -3112872 + L2 LINE L2 2995 3058 -214 1842 139 7 28 chr1 239551641 239551928 -3112425 + AluJb SINE Alu 9 289 -23 2018 116 0 33 chr1 239552440 239552743 -3111610 + AluSx SINE Alu 1 293 -19 1856 134 18 21 chr1 239553041 239553324 -3111029 - AluJo SINE Alu -30 282 1 407 231 110 28 chr1 239553325 239553507 -3110846 - L1ME2 LINE L1 -3046 3169 2973 981 153 13 0 chr1 239553511 239553661 -3110692 - AluJb SINE Alu -24 288 137 2119 126 7 10 chr1 239553661 239553971 -3110382 - AluSx SINE Alu -3 309 1 423 263 29 23 chr1 239554151 239554326 -3110027 + (CATA)n Simple_repeat Simple_repeat 3 178 0 307 358 23 0 chr1 239554247 239554453 -3109900 + (CA)n Simple_repeat Simple_repeat 1 210 0 * 494 265 6 28 chr1 239554460 239554641 -3109712 + (CATA)n Simple_repeat Simple_repeat 2 178 0 284 113 113 0 chr1 239554824 239554877 -3109476 + MSTB LTR MaLR 45 103 -323 497 104 0 0 chr1 239554882 239554949 -3109404 - MSTB LTR MaLR -359 67 1 391 157 29 14 chr1 239554951 239555021 -3109332 - L1ME2 LINE L1 -5955 441 371 294 347 95 0 chr1 239555083 239555230 -3109123 + MIR SINE MIR 92 252 -10 439 236 9 9 chr1 239556275 239556385 -3107968 + MER53 DNA DNA 1 110 -79 2488 65 3 0 chr1 239556771 239557063 -3107290 + AluY SINE Alu 1 293 -18 898 235 30 40 chr1 239557164 239557466 -3106887 - L1MEc LINE L1 -6066 330 32 572 341 76 9 chr1 239557573 239557901 -3106452 - L1MEd LINE L1 -5351 768 419 247 219 88 80 chr1 239558100 239558174 -3106179 - L1MEd LINE L1 -5965 154 77 2284 70 35 0 chr1 239558174 239558461 -3105892 + AluSp SINE Alu 1 297 -16 247 219 88 80 chr1 239558461 239558523 -3105830 - L1MEd LINE L1 -6042 77 17 294 185 108 0 chr1 239558575 239558640 -3105713 + MER94 DNA DNA 1 72 -62 293 189 137 11 chr1 239559163 239559258 -3105095 + MER114 LTR ERV 393 499 -149 1781 122 100 4 chr1 239559794 239560073 -3104280 - AluSx SINE Alu -6 306 1 1728 99 4 4 chr1 239560087 239560320 -3104033 - AluSg/x SINE Alu -10 302 70 323 94 0 19 chr1 239561143 239561196 -3103157 + (TG)n Simple_repeat Simple_repeat 1 52 0 243 0 0 0 chr1 239561725 239561752 -3102601 + (T)n Simple_repeat Simple_repeat 1 27 0 210 71 0 0 chr1 239561853 239561881 -3102472 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 3998 48 20 4 chr1 239561906 239562405 -3101948 - L1PA5 LINE L1 -13 6141 5635 24 32 0 0 chr1 239563287 239563318 -3101035 + AT_rich Low_complexity Low_complexity 1 31 0 193 304 104 9 chr1 239563577 239563692 -3100661 - L2 LINE L2 -182 3131 3006 247 249 131 63 chr1 239564808 239565029 -3099324 + L1MEd LINE L1 1414 1649 -4881 294 248 56 24 chr1 239565174 239565335 -3099018 + L1MEd LINE L1 1843 1942 -4598 263 301 16 24 chr1 239565621 239565744 -3098609 + L1MEd LINE L1 2661 2782 -3758 2358 74 27 0 chr1 239566245 239566544 -3097809 - AluY SINE Alu -4 307 1 437 235 56 82 chr1 239567221 239567417 -3096936 + MIR SINE MIR 62 252 -10 264 59 0 0 chr1 239567426 239567460 -3096893 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 297 0 0 0 chr1 239567587 239567620 -3096733 + (CA)n Simple_repeat Simple_repeat 2 34 0 358 299 130 47 chr1 239569360 239569614 -3094739 + L2 LINE L2 2981 3255 -17 228 111 0 0 chr1 239569627 239569663 -3094690 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 319 238 74 49 chr1 239570953 239571075 -3093278 + MIR3 SINE MIR 76 200 -8 223 262 123 49 chr1 239573039 239573161 -3091192 + MIR3 SINE MIR 3 133 -75 23 0 0 0 chr1 239573476 239573499 -3090854 + AT_rich Low_complexity Low_complexity 1 23 0 1753 165 7 21 chr1 239573571 239573856 -3090497 + AluJo SINE Alu 1 281 -31 372 153 0 0 chr1 239573861 239573946 -3090407 + CT-rich Low_complexity Low_complexity 2 86 0 336 270 50 0 chr1 239574294 239574394 -3089959 + MLT1G LTR MaLR 1 105 -490 414 105 0 0 chr1 239574395 239574452 -3089901 + Alu SINE Alu 2 58 -260 233 277 40 0 chr1 239574789 239574937 -3089416 + A-rich Low_complexity Low_complexity 3 156 0 1519 140 4 9 chr1 239575005 239575234 -3089119 + AluSq SINE Alu 79 306 -7 1570 261 38 41 chr1 239575238 239575770 -3088583 + MLT1G LTR MaLR 61 590 0 1905 253 46 23 chr1 239575920 239576620 -3087733 - L1M4 LINE L1 -1380 6185 5470 31 68 0 0 chr1 239577312 239577371 -3086982 + AT_rich Low_complexity Low_complexity 1 59 0 1782 153 43 0 chr1 239578099 239578380 -3085973 - AluSx SINE Alu -19 293 1 549 222 146 0 chr1 239578662 239578806 -3085547 + MIR SINE MIR 12 176 -86 494 269 25 6 chr1 239578820 239578980 -3085373 - L1ME1 LINE L1 -5 6161 5999 4980 209 51 19 chr1 239579085 239580298 -3084055 - L1M4 LINE L1 -2603 4962 3687 2274 103 0 0 chr1 239580298 239580588 -3083765 - AluSc SINE Alu -19 290 1 4980 209 51 19 chr1 239580588 239581028 -3083325 - L1M4 LINE L1 -3878 3687 3262 27 39 0 19 chr1 239581057 239581083 -3083270 + AT_rich Low_complexity Low_complexity 1 26 -25 2546 126 10 3 chr1 239581083 239581473 -3082880 - L1MA1 LINE L1 -8 6294 5902 27 39 0 19 chr1 239581473 239581498 -3082855 + AT_rich Low_complexity Low_complexity 26 51 0 4842 123 18 9 chr1 239581505 239582654 -3081699 - L1MA1 LINE L1 -359 5943 4780 7133 195 37 7 chr1 239582655 239584007 -3080346 - L1M4 LINE L1 -5887 1678 286 1664 169 68 15 chr1 239584007 239584332 -3080021 - THE1C LTR MaLR 0 375 34 254 35 0 0 chr1 239584350 239584379 -3079974 + THE1-int LTR MaLR 1219 1247 -333 * 2173 141 15 3 chr1 239584377 239584711 -3079642 + THE1-int LTR MaLR 458 795 -785 348 96 0 39 chr1 239584711 239584763 -3079590 - THE1C LTR MaLR -314 50 1 1101 238 22 7 chr1 239584763 239585032 -3079321 - L1M4 LINE L1 -7275 290 18 3567 232 61 25 chr1 239585032 239586836 -3077517 - L1M2 LINE L1 -4678 2531 1 309 314 32 64 chr1 239587887 239588154 -3076199 - MLT1J LTR MaLR -158 353 60 1713 217 76 48 chr1 239588292 239588790 -3075563 - MLT2B1 LTR ERVL -6 514 3 373 307 33 7 chr1 239588842 239588995 -3075358 + MIR3 SINE MIR 49 205 -3 270 105 0 0 chr1 239590242 239590280 -3074073 - U2 snRNA snRNA -150 38 1 2029 117 10 17 chr1 239590504 239590802 -3073551 - AluSx SINE Alu -16 296 1 323 256 135 32 chr1 239591001 239591157 -3073196 - HAL1 LINE L1 -5 2502 2331 194 193 53 35 chr1 239592415 239592472 -3071881 - L3b LINE CR1 -228 1355 1298 697 110 0 0 chr1 239593815 239593915 -3070438 - LTR12 LTR ERV1 0 714 615 338 193 11 11 chr1 239593917 239594005 -3070348 - LTR30 LTR ERV1 -79 643 556 1590 85 3 192 chr1 239594007 239594361 -3069992 - LTR12 LTR ERV1 -427 287 1 210 273 57 23 chr1 239594380 239594468 -3069885 - MIR SINE MIR -55 207 117 2822 231 72 27 chr1 239594554 239595755 -3068598 - L1ME1 LINE L1 -8 6158 4904 242 353 133 18 chr1 239595903 239596121 -3068232 + MIR SINE MIR 20 262 0 1666 167 47 13 chr1 239596355 239596654 -3067699 - AluJo SINE Alu -3 309 1 6338 133 22 10 chr1 239597034 239598734 -3065619 - L1MA3 LINE L1 0 6305 4583 232 280 0 0 chr1 239600515 239600565 -3063788 + polypyrimidine Low_complexity Low_complexity 3 52 0 4161 88 15 2 chr1 239600859 239601406 -3062947 - MER41A LTR ERV1 0 554 1 2760 166 27 76 chr1 239602842 239603078 -3061275 + LTR9 LTR ERV1 1 247 -365 5338 58 23 25 chr1 239603078 239603767 -3060586 - LTR12 LTR ERV1 0 688 1 2760 166 27 76 chr1 239603767 239604161 -3060192 + LTR9 LTR ERV1 247 600 -12 292 325 18 9 chr1 239606255 239606369 -3057984 + L2 LINE L2 2591 2705 -609 405 355 92 6 chr1 239606490 239606836 -3057517 + L2 LINE L2 2901 3276 -37 436 346 85 20 chr1 239607370 239607665 -3056688 - L3 LINE CR1 -13 1564 1251 371 310 103 25 chr1 239607674 239607916 -3056437 + MIR SINE MIR 2 262 0 321 332 88 34 chr1 239607991 239608229 -3056124 - L3 LINE CR1 -989 588 338 309 253 23 0 chr1 239609049 239609136 -3055217 - MIR SINE MIR -17 245 157 283 348 65 27 chr1 239610479 239610959 -3053394 + L2 LINE L2 2181 2678 -636 514 245 45 19 chr1 239611994 239612149 -3052204 - MER5B DNA MER1_type -3 175 17 198 246 14 14 chr1 239614514 239614583 -3049770 - MIR SINE MIR -112 96 28 184 288 14 14 chr1 239616383 239616456 -3047897 - L2 LINE L2 -266 3006 2934 224 298 38 69 chr1 239616680 239616811 -3047542 - MIR SINE MIR -124 138 12 274 261 39 62 chr1 239618976 239619106 -3045247 - MIR3 SINE MIR -47 161 35 344 263 76 41 chr1 239620113 239620284 -3044069 + MIR SINE MIR 20 196 -66 258 331 21 41 chr1 239620330 239620475 -3043878 - L2 LINE L2 -4 3268 3127 640 254 170 46 chr1 239620488 239620714 -3043639 + L2 LINE L2 2871 3068 -245 255 31 0 0 chr1 239620714 239620746 -3043607 + (TG)n Simple_repeat Simple_repeat 1 32 0 640 254 170 46 chr1 239620746 239620913 -3043440 + L2 LINE L2 3068 3313 0 935 212 21 5 chr1 239621001 239621190 -3043163 - MLT1D LTR MaLR -8 497 306 895 163 4 106 chr1 239621213 239621440 -3042913 - MLT1D LTR MaLR -301 204 1 2227 126 0 0 chr1 239621663 239621965 -3042388 - AluSx SINE Alu -10 302 1 918 164 48 26 chr1 239622562 239622751 -3041602 + MER3 DNA MER1_type 1 193 -16 247 283 117 25 chr1 239622838 239622958 -3041395 + MIR SINE MIR 20 150 -112 483 248 16 8 chr1 239623039 239623164 -3041189 - MER97b DNA MER1_type? -924 129 4 362 253 0 0 chr1 239623322 239623401 -3040952 - L2 LINE L2 -2 3270 3192 3853 164 49 66 chr1 239623614 239624509 -3039844 - L1MB8 LINE L1 0 6178 5299 455 348 140 38 chr1 239625689 239626433 -3037920 + L3 LINE CR1 516 1335 -242 289 320 47 0 chr1 239626657 239626785 -3037568 - L2 LINE L2 -212 3060 2927 21 57 0 0 chr1 239632893 239632928 -3031425 + AT_rich Low_complexity Low_complexity 1 35 0 377 257 59 22 chr1 239633843 239633979 -3030374 - L1MC4a LINE L1 -1911 5897 5757 210 222 16 32 chr1 239635710 239635773 -3028580 + GA-rich Low_complexity Low_complexity 1 62 0 186 226 0 94 chr1 239637115 239637168 -3027185 - L2 LINE L2 -69 3244 3197 1643 168 9 44 chr1 239637691 239638006 -3026347 - AluJb SINE Alu -8 304 1 1865 163 0 0 chr1 239638463 239638786 -3025567 + AluJb SINE Alu 1 323 0 1511 171 38 20 chr1 239639704 239639996 -3024357 + AluJo SINE Alu 1 297 -15 1569 140 10 78 chr1 239640005 239640312 -3024041 + AluJb SINE Alu 11 296 -16 432 311 98 50 chr1 239643021 239643359 -3020994 + L3 LINE CR1 408 761 -816 395 286 86 89 chr1 239643668 239644004 -3020349 + MLT1K LTR MaLR 247 581 -7 282 222 97 0 chr1 239644027 239644099 -3020254 + L3 LINE CR1 946 1024 -553 648 283 80 50 chr1 239644143 239644567 -3019786 + L3 LINE CR1 1137 1573 -4 276 91 0 0 chr1 239644831 239644875 -3019478 + (CA)n Simple_repeat Simple_repeat 1 44 0 3858 182 18 25 chr1 239644989 239645855 -3018498 - L1MB7 LINE L1 -165 6019 5300 1356 208 53 23 chr1 239646101 239646356 -3017997 - L1M3 LINE L1 -722 5959 5677 2148 133 0 13 chr1 239646356 239646672 -3017681 - AluSx SINE Alu 0 312 1 1356 208 53 23 chr1 239646672 239646875 -3017478 - L1M3 LINE L1 -1004 5677 5482 1105 131 23 0 chr1 239646938 239647114 -3017239 + L1M4 LINE L1 5331 5510 -674 1113 260 54 15 chr1 239647114 239647503 -3016850 - L1M3 LINE L1 -1238 5406 5003 356 250 42 0 chr1 239647472 239647568 -3016785 - L1M3 LINE L1 -4727 1919 1820 * 316 292 45 55 chr1 239648040 239648286 -3016067 - L1M3 LINE L1 -5921 713 50 962 252 47 0 chr1 239648529 239648743 -3015610 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr1 239649360 239649381 -3014972 + AT_rich Low_complexity Low_complexity 1 21 0 243 260 94 31 chr1 239649646 239649773 -3014580 - L1MEd LINE L1 -4642 3104 2970 231 222 0 0 chr1 239649761 239649815 -3014538 - L1MB8 LINE L1 -1 6177 6124 * 4827 55 8 12 chr1 239649825 239650885 -3013468 - SVA Other Other -947 1385 2 185 83 28 0 chr1 239650894 239650930 -3013423 + (GGGAGA)n Simple_repeat Simple_repeat 3 39 0 519 217 25 8 chr1 239650930 239651050 -3013303 - L1MB8 LINE L1 -42 6136 6015 300 265 92 32 chr1 239651059 239651224 -3013129 - L1M1 LINE L1 -4663 2902 2734 1404 195 10 43 chr1 239652880 239653182 -3011171 - AluJo SINE Alu -20 292 1 301 208 76 76 chr1 239654162 239654306 -3010047 - L1MC5 LINE L1 -44 7917 7774 634 143 32 0 chr1 239654387 239654513 -3009840 + (TATG)n Simple_repeat Simple_repeat 3 132 0 374 239 119 27 chr1 239654522 239654868 -3009485 - L1MEd LINE L1 -4977 2588 2216 228 191 21 21 chr1 239655469 239655516 -3008837 - L1MEd LINE L1 -6023 1532 1486 353 292 0 22 chr1 239655685 239655774 -3008579 - MER8 DNA MER2_type -151 88 2 257 222 37 25 chr1 239655775 239655856 -3008497 - L1MC5 LINE L1 -184 7777 7696 488 254 99 73 chr1 239655881 239656184 -3008169 - L1MC5 LINE L1 -340 7621 7311 236 235 103 15 chr1 239656340 239656476 -3007877 - L1MC4 LINE L1 -774 7268 7121 1227 167 40 126 chr1 239656590 239656986 -3007367 - MLT1A1 LTR MaLR -3 362 1 227 74 0 0 chr1 239658050 239658077 -3006276 - Alu SINE Alu -187 112 86 2223 104 17 0 chr1 239659123 239659422 -3004931 - AluSq SINE Alu -9 304 1 207 245 0 0 chr1 239659678 239659731 -3004622 + MIR SINE MIR 189 241 -21 183 227 42 84 chr1 239659812 239659931 -3004422 + L2 LINE L2 2937 3050 -222 1734 152 30 34 chr1 239660143 239660439 -3003914 - AluJb SINE Alu -17 295 1 279 0 0 0 chr1 239660465 239660496 -3003857 + (TG)n Simple_repeat Simple_repeat 2 32 0 194 190 17 35 chr1 239660967 239661025 -3003328 - L2 LINE L2 -1 3312 3256 490 211 138 2 chr1 239661619 239661802 -3002551 + MER63 DNA MER1_type 1 1688 0 2233 121 10 0 chr1 239663457 239663763 -3000590 + AluSx SINE Alu 1 309 -3 228 246 43 14 chr1 239664480 239664549 -2999804 + MIR3 SINE MIR 1 71 -137 3492 246 71 29 chr1 239666512 239668168 -2996185 + L1MDa LINE L1 902 2487 -4053 2163 150 17 19 chr1 239668168 239668571 -2995782 + L1MB3 LINE L1 5771 6183 0 4022 140 37 39 chr1 239668571 239669335 -2995018 + L1MDa LINE L1 1572 2333 -4207 294 175 38 0 chr1 239669341 239669421 -2994932 + (TA)n Simple_repeat Simple_repeat 2 84 0 2318 201 64 42 chr1 239669421 239670322 -2994031 + L1MDa LINE L1 2316 3237 -3303 22 0 0 0 chr1 239671564 239671586 -2992767 + AT_rich Low_complexity Low_complexity 1 22 0 204 235 39 0 chr1 239672679 239672730 -2991623 + MIR3 SINE MIR 126 178 -30 654 109 0 0 chr1 239674013 239674114 -2990239 + (TC)n Simple_repeat Simple_repeat 1 101 0 306 295 141 26 chr1 239674615 239674771 -2989582 - MER5B DNA MER1_type 0 178 5 207 69 0 0 chr1 239674883 239674912 -2989441 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1282 252 83 14 chr1 239674979 239675430 -2988923 - MLT1G LTR MaLR -3 587 46 183 303 0 15 chr1 239675433 239675499 -2988854 - L2 LINE L2 -775 2539 2475 199 258 32 48 chr1 239677063 239677125 -2987228 - MIR3 SINE MIR -23 185 125 3449 70 0 0 chr1 239677775 239678215 -2986138 - L1PA7 LINE L1 -1 6153 5714 406 129 24 0 chr1 239678322 239678407 -2985946 + (CA)n Simple_repeat Simple_repeat 1 87 0 211 211 0 0 chr1 239680385 239680423 -2983930 + L2 LINE L2 3220 3257 -15 318 200 0 53 chr1 239681393 239681468 -2982885 + L3 LINE CR1 652 722 -855 293 353 33 0 chr1 239681476 239681598 -2982755 + MIR SINE MIR 84 209 -53 180 0 0 0 chr1 239681750 239681770 -2982583 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr1 239682058 239682088 -2982265 + AT_rich Low_complexity Low_complexity 1 30 0 326 229 76 38 chr1 239682102 239682233 -2982120 + L3 LINE CR1 820 955 -622 203 296 0 0 chr1 239682809 239682863 -2981490 + MIR3 SINE MIR 142 195 -13 298 206 16 0 chr1 239683351 239683414 -2980939 - MER116 DNA Mariner -11 69 6 603 185 59 7 chr1 239683707 239683842 -2980511 + MLT1K LTR MaLR 373 514 -74 1538 91 5 0 chr1 239683842 239684041 -2980312 - AluSg/x SINE Alu -10 302 103 1401 96 121 0 chr1 239684142 239684341 -2980012 + AluY SINE Alu 83 305 -6 1091 176 17 133 chr1 239684341 239684687 -2979666 + MLT1A1 LTR MaLR 48 353 -12 249 270 0 0 chr1 239685794 239685857 -2978496 - L2 LINE L2 -25 3247 3185 467 348 78 8 chr1 239686045 239686289 -2978064 - MIR SINE MIR 0 262 2 2912 16 0 0 chr1 239686380 239686696 -2977657 + AluYb8 SINE Alu 1 316 -2 207 280 0 0 chr1 239687095 239687145 -2977208 + GA-rich Low_complexity Low_complexity 3 52 0 195 69 0 0 chr1 239687564 239687593 -2976760 + (A)n Simple_repeat Simple_repeat 1 29 0 2175 119 20 0 chr1 239688504 239688806 -2975547 - AluSg SINE Alu -2 308 1 385 301 83 48 chr1 239691476 239691705 -2972648 - MIR SINE MIR -3 259 23 220 248 54 108 chr1 239691891 239692020 -2972333 + MIR3 SINE MIR 84 205 -3 204 267 0 0 chr1 239692453 239692498 -2971855 + GA-rich Low_complexity Low_complexity 2 46 0 2476 84 0 0 chr1 239692754 239693064 -2971289 - AluSg SINE Alu 0 310 1 396 0 0 0 chr1 239693612 239693656 -2970697 + (TA)n Simple_repeat Simple_repeat 1 44 0 43 35 0 0 chr1 239693765 239693822 -2970531 + AT_rich Low_complexity Low_complexity 1 57 0 215 36 18 89 chr1 239694175 239694231 -2970122 + (TAAAAA)n Simple_repeat Simple_repeat 3 54 0 549 147 0 0 chr1 239694560 239694655 -2969698 + (CA)n Simple_repeat Simple_repeat 1 95 0 196 256 23 0 chr1 239695271 239695314 -2969039 + MER5A DNA MER1_type 144 187 -2 198 0 0 0 chr1 239696269 239696291 -2968062 + (A)n Simple_repeat Simple_repeat 1 22 0 43545 35 22 1 chr1 239696291 239702312 -2962041 + L1PA3 LINE L1 5 6155 0 2321 93 0 22 chr1 239704186 239704325 -2960028 + AluSx SINE Alu 1 142 -170 2443 97 0 0 chr1 239704325 239704633 -2959720 + AluSp SINE Alu 1 308 -5 2321 93 0 22 chr1 239704633 239704805 -2959548 + AluSx SINE Alu 142 305 -7 258 348 17 25 chr1 239704879 239704997 -2959356 - L3b LINE CR1 -95 1488 1372 404 275 98 18 chr1 239705494 239705682 -2958671 - MIR SINE MIR -14 248 46 23 33 0 0 chr1 239705805 239705835 -2958518 + AT_rich Low_complexity Low_complexity 1 30 0 1713 132 63 3 chr1 239705869 239705981 -2958372 - L1MB2 LINE L1 -53 6118 6007 327 240 118 50 chr1 239705981 239706157 -2958196 - L1MC1 LINE L1 -329 6004 5809 912 102 0 36 chr1 239706157 239706294 -2958059 - FLAM_C SINE Alu -1 132 1 327 240 118 50 chr1 239706294 239706338 -2958015 - L1MC1 LINE L1 -524 5809 5769 2010 148 18 42 chr1 239706398 239706782 -2957571 - THE1C LTR MaLR 0 375 1 264 301 21 56 chr1 239706916 239707059 -2957294 - MIR SINE MIR -123 139 2 189 311 45 23 chr1 239707091 239707223 -2957130 - MIR3 SINE MIR -71 137 3 502 263 95 21 chr1 239707510 239707700 -2956653 - MIR3 SINE MIR -4 204 1 389 171 0 0 chr1 239708319 239708395 -2955958 - L1MA6 LINE L1 0 6300 6225 2229 103 10 3 chr1 239708480 239708782 -2955571 - AluSx SINE Alu -8 304 1 482 160 43 0 chr1 239708910 239709004 -2955349 + Charlie1 DNA MER1_type 2181 2278 -483 410 320 8 0 chr1 239709037 239709159 -2955194 - L2 LINE L2 0 3313 3191 3492 184 48 14 chr1 239709182 239709912 -2954441 + L1MB8 LINE L1 5413 6167 -11 2403 121 29 0 chr1 239709968 239710316 -2954037 - THE1B LTR MaLR -6 358 1 789 298 57 42 chr1 239712449 239712835 -2951518 - HsTC2 DNA Tc2 -1007 891 500 2292 215 81 2 chr1 239712887 239713421 -2950932 - L1MD3 LINE L1 0 7995 7420 293 203 203 0 chr1 239713774 239713843 -2950510 - MER103 DNA DNA -80 86 4 452 275 90 17 chr1 239714826 239714897 -2949456 + MIR SINE MIR 7 71 -191 2454 90 0 0 chr1 239714897 239715197 -2949156 - AluSc SINE Alu -9 300 1 452 275 90 17 chr1 239715197 239715303 -2949050 + MIR SINE MIR 71 197 -65 1111 99 26 0 chr1 239716856 239717007 -2947346 + AluSq SINE Alu 32 186 -127 309 135 0 0 chr1 239717017 239717069 -2947284 + (GAA)n Simple_repeat Simple_repeat 2 53 0 281 236 22 11 chr1 239718220 239718309 -2946044 + MIR SINE MIR 64 153 -109 488 293 55 6 chr1 239718330 239718494 -2945859 - MER69A DNA AcHobo -5 172 1 2361 78 7 7 chr1 239718939 239719248 -2945105 - AluY SINE Alu -2 309 1 759 210 26 52 chr1 239719276 239719505 -2944848 + L1MB8 LINE L1 5955 6177 -1 * 862 286 122 30 chr1 239719502 239720208 -2944145 + HAL1 LINE L1 826 1596 -911 225 267 116 41 chr1 239720223 239720395 -2943958 + HAL1 LINE L1 2240 2424 -83 424 233 9 9 chr1 239720789 239720905 -2943448 - MER103 DNA DNA -15 151 36 22 88 0 0 chr1 239721541 239721598 -2942755 + AT_rich Low_complexity Low_complexity 1 57 0 1402 168 47 91 chr1 239721770 239722133 -2942220 + MER7A DNA MER2_type 1 345 -1 1664 190 3 10 chr1 239722632 239722937 -2941416 - AluJo SINE Alu -9 303 1 22 35 0 0 chr1 239722943 239722972 -2941381 + AT_rich Low_complexity Low_complexity 1 29 0 679 249 37 73 chr1 239723141 239723414 -2940939 - MER102a DNA MER1_type 0 330 68 282 116 0 0 chr1 239723453 239723496 -2940857 + (TG)n Simple_repeat Simple_repeat 2 44 0 9695 79 14 2 chr1 239723596 239725564 -2938789 - L1PA7 LINE L1 -131 6023 4038 6196 87 5 15 chr1 239725559 239726544 -2937809 + L1P3 LINE L1 943 1916 -4545 * 550 164 124 62 chr1 239726544 239726721 -2937632 - MLT1H LTR MaLR -4 545 358 396 257 64 0 chr1 239726857 239726997 -2937356 - MLT1H LTR MaLR -389 160 12 269 0 0 53 chr1 239727017 239727055 -2937298 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1861 167 49 3 chr1 239727115 239727444 -2936909 + MER2 DNA MER2_type 1 344 0 385 289 146 17 chr1 239729042 239729281 -2935072 - L1MC4a LINE L1 -1371 6437 6168 1024 217 98 80 chr1 239729313 239729587 -2934766 - L1MC4a LINE L1 -2080 5728 5460 1828 151 27 23 chr1 239729587 239729886 -2934467 - AluSx SINE Alu -12 300 1 1024 217 98 80 chr1 239729886 239729897 -2934456 - L1MC4a LINE L1 -2348 5460 5451 1812 159 13 10 chr1 239729897 239730199 -2934154 - AluJo SINE Alu -9 303 1 1024 217 98 80 chr1 239730199 239730249 -2934104 - L1MC4a LINE L1 -2357 5451 5386 713 141 13 54 chr1 239730249 239730398 -2933955 - FLAM_C SINE Alu 0 143 1 197 119 24 0 chr1 239730401 239730443 -2933910 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 6020 100 45 0 chr1 239730449 239731407 -2932946 - L1PA13 LINE L1 -8 6155 5172 295 193 28 37 chr1 239731409 239731518 -2932835 - L1MC4a LINE L1 -2445 5363 5256 335 146 0 0 chr1 239731635 239731683 -2932670 + AluJb SINE Alu 1 48 -254 1631 167 4 4 chr1 239731784 239732054 -2932299 + AluJb SINE Alu 26 295 -17 452 295 88 84 chr1 239732216 239732528 -2931825 + ERVL LTR ERVL 1045 1361 -4293 2326 93 0 20 chr1 239732528 239732828 -2931525 + AluSg SINE Alu 1 294 -16 452 295 88 84 chr1 239732828 239733037 -2931316 + ERVL LTR ERVL 1361 1568 -4086 589 341 60 14 chr1 239733041 239733506 -2930847 + ERVL LTR ERVL 2527 3043 -2442 1531 295 56 42 chr1 239733518 239734116 -2930237 + ERVL LTR ERVL 3232 3941 -1823 1565 135 0 0 chr1 239734116 239734331 -2930022 + AluSg/x SINE Alu 75 289 -21 1531 295 56 42 chr1 239734331 239734511 -2929842 + ERVL LTR ERVL 3941 4117 -1647 22 35 0 0 chr1 239734587 239734616 -2929737 + AT_rich Low_complexity Low_complexity 1 29 0 687 300 65 46 chr1 239734633 239734888 -2929465 + ERVL LTR ERVL 4118 4381 -1273 414 0 0 0 chr1 239734888 239734934 -2929419 + (TG)n Simple_repeat Simple_repeat 1 46 0 687 300 65 46 chr1 239734934 239734985 -2929368 + ERVL LTR ERVL 4381 4430 -1224 249 252 160 0 chr1 239735246 239735377 -2928976 + L1M LINE L1 5257 5408 -756 1626 158 35 7 chr1 239735477 239735640 -2928713 - AluJb SINE Alu -19 293 117 207 0 0 0 chr1 239735640 239735663 -2928690 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1626 158 35 7 chr1 239735663 239735784 -2928569 - AluJb SINE Alu -195 117 1 671 269 61 37 chr1 239735844 239736345 -2928008 - L1MEd LINE L1 -4862 1257 789 14343 160 16 13 chr1 239736573 239740679 -2923674 - L1MA3 LINE L1 0 7724 3602 6308 188 74 54 chr1 239740682 239742746 -2921607 - L1PA10 LINE L1 0 6483 4463 570 115 0 0 chr1 239742746 239742824 -2921529 - AluS SINE Alu -234 79 2 6308 188 74 54 chr1 239742824 239744163 -2920190 - L1PA10 LINE L1 -2020 4463 3153 1780 174 14 0 chr1 239744163 239744478 -2919875 - AluSx SINE Alu 0 319 1 6308 188 74 54 chr1 239744478 239747054 -2917299 - L1PA10 LINE L1 -3330 3153 107 * 11447 161 104 19 chr1 239747052 239749972 -2914381 - L1MA3 LINE L1 -4053 3512 13 3403 209 19 23 chr1 239751022 239751722 -2912631 - L1MB3 LINE L1 -9 6174 5476 261 0 0 0 chr1 239751722 239751751 -2912602 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3403 209 19 23 chr1 239751751 239751825 -2912528 - L1MB3 LINE L1 -707 5476 5403 254 371 129 0 chr1 239753215 239753339 -2911014 - L2 LINE L2 0 3272 3133 243 251 29 21 chr1 239753345 239753458 -2910895 + CT-rich Low_complexity Low_complexity 3 179 0 1835 156 33 3 chr1 239753463 239753764 -2910589 - AluJo SINE Alu -2 310 1 219 365 109 0 chr1 239753826 239753963 -2910390 + L2 LINE L2 3118 3269 -3 183 252 138 132 chr1 239753977 239754136 -2910217 - L2 LINE L2 -38 3234 3075 316 325 16 40 chr1 239754237 239754363 -2909990 + L2 LINE L2 3191 3313 0 295 83 33 100 chr1 239754875 239754935 -2909418 - MLT2D LTR ERVL 0 414 342 398 75 0 0 chr1 239755637 239755704 -2908649 - L1P LINE L1 -830 5316 5250 665 88 0 0 chr1 239755716 239755807 -2908546 - L1P3 LINE L1 -6364 97 7 2022 141 21 0 chr1 239755958 239756248 -2908105 + AluSx SINE Alu 1 296 -16 1781 150 39 18 chr1 239756255 239756541 -2907812 + AluJo SINE Alu 1 292 -20 230 293 101 66 chr1 239756668 239756879 -2907474 - MIR SINE MIR -11 251 36 2435 67 3 10 chr1 239757090 239757390 -2906963 - AluY SINE Alu 0 311 14 2068 114 4 0 chr1 239757500 239757812 -2906541 - AluSx SINE Alu 0 313 1 421 302 27 76 chr1 239757960 239758328 -2906025 + L1ME4a LINE L1 5581 5930 -191 423 0 0 0 chr1 239758341 239758388 -2905965 + (TG)n Simple_repeat Simple_repeat 2 48 0 185 320 156 23 chr1 239759096 239759224 -2905129 + L2 LINE L2 3125 3269 -3 380 213 62 0 chr1 239759541 239759621 -2904732 - L2 LINE L2 0 3313 3229 577 282 68 0 chr1 239761752 239761915 -2902438 - MIR3 SINE MIR -1 207 34 230 184 53 0 chr1 239761940 239761978 -2902375 - MIR SINE MIR -135 73 34 230 184 53 0 chr1 239762003 239762041 -2902312 - MIR SINE MIR -135 73 34 326 267 70 0 chr1 239762172 239762258 -2902095 + MIR SINE MIR 49 140 -68 278 301 81 8 chr1 239762349 239762472 -2901881 - MIR3 SINE MIR -47 161 30 235 270 79 34 chr1 239766458 239766547 -2897806 + MIR SINE MIR 91 183 -79 284 330 27 0 chr1 239769011 239769123 -2895230 - MIR SINE MIR -62 146 32 1430 89 243 28 chr1 239769995 239770242 -2894111 - AluJb SINE Alu -12 300 1 682 294 14 19 chr1 239770280 239770491 -2893862 - MIR SINE MIR 0 262 53 1974 158 0 7 chr1 239772592 239772890 -2891463 - AluJo SINE Alu -12 300 5 361 298 29 0 chr1 239773271 239773375 -2890978 + MLT1J LTR MaLR 1 107 -404 2157 115 0 3 chr1 239773536 239773824 -2890529 - AluSx SINE Alu -25 287 1 1967 198 88 36 chr1 239774100 239774599 -2889754 - MLT1F LTR MaLR -16 526 2 378 258 40 40 chr1 239777792 239777916 -2886437 - MIR3 SINE MIR -4 204 81 2188 133 7 0 chr1 239780014 239780314 -2884039 + AluSx SINE Alu 1 302 -10 24 53 0 0 chr1 239781382 239781420 -2882933 + GC_rich Low_complexity Low_complexity 1 38 0 216 0 0 0 chr1 239786942 239786966 -2877387 + (GGA)n Simple_repeat Simple_repeat 2 25 0 417 289 0 0 chr1 239787465 239787560 -2876793 + MER82 DNA MER2_type 1 95 -558 332 167 83 0 chr1 239787560 239787603 -2876750 + MADE1 DNA Mariner 3 41 -39 2338 101 0 7 chr1 239787603 239787911 -2876442 - AluSx SINE Alu -6 306 1 332 167 83 0 chr1 239787911 239787939 -2876414 + MADE1 DNA Mariner 41 80 0 2609 62 0 0 chr1 239788363 239788668 -2875685 + AluY SINE Alu 1 305 -6 2034 234 29 2 chr1 239788751 239789196 -2875157 + MER82 DNA MER2_type 197 653 0 2315 97 0 0 chr1 239790104 239790414 -2873939 + AluSx SINE Alu 2 311 -1 1112 232 9 5 chr1 239790579 239790799 -2873554 + MER58A DNA MER1_type 4 224 0 2104 113 0 6 chr1 239790979 239791290 -2873063 - AluSc SINE Alu 0 309 1 747 336 83 22 chr1 239793767 239794091 -2870262 - L3 LINE CR1 -2 1575 1232 1181 231 112 45 chr1 239794614 239795016 -2869337 + MER77 LTR ERV1 177 605 0 301 303 81 63 chr1 239796558 239796842 -2867511 - L1M2a LINE L1 -5792 1376 1088 2137 159 48 100 chr1 239798332 239798711 -2865642 - L1MB3 LINE L1 -3 6180 5838 3917 91 29 0 chr1 239798711 239799272 -2865081 + L1MA1 LINE L1 5726 6302 0 2137 159 48 100 chr1 239799272 239799450 -2864903 - L1MB3 LINE L1 -345 5838 5652 458 234 71 19 chr1 239799470 239799624 -2864729 + L1MA9 LINE L1 6146 6307 -5 333 47 0 0 chr1 239799704 239799747 -2864606 + (TA)n Simple_repeat Simple_repeat 2 44 0 1605 147 53 3 chr1 239799851 239800136 -2864217 - L1PB3 LINE L1 -3 6151 5853 1875 216 40 15 chr1 239800136 239800670 -2863683 - L1MB3 LINE L1 -511 5669 5122 1947 113 3 7 chr1 239800994 239801308 -2863045 + AluSx SINE Alu 1 313 0 2222 99 0 16 chr1 239801790 239802102 -2862251 + AluSx SINE Alu 1 307 -5 236 287 102 28 chr1 239802274 239802382 -2861971 + L2 LINE L2 3142 3257 -15 1817 126 37 10 chr1 239802507 239802801 -2861552 + AluJb SINE Alu 1 302 -10 5171 166 73 18 chr1 239853093 239855160 -2809193 + L1MA4 LINE L1 4132 6294 -6 6054 163 34 19 chr1 239855165 239856044 -2808309 + L1M2 LINE L1 4154 5057 -1219 5720 22 0 3 chr1 239856044 239856664 -2807689 + L1PA5 LINE L1 5534 6154 0 6054 163 34 19 chr1 239856664 239857149 -2807204 + L1M2 LINE L1 5057 5533 -743 359 83 0 0 chr1 239857149 239857197 -2807156 - MADE1 DNA Mariner -1 79 32 335 143 0 0 chr1 239857208 239857264 -2807089 + L1MA5 LINE L1 4402 4457 -1689 380 60 0 0 chr1 239857270 239857320 -2807033 + MADE1 DNA Mariner 31 80 0 3967 160 55 7 chr1 239857320 239858032 -2806321 + L1MA5 LINE L1 5555 6300 0 938 213 42 18 chr1 239858036 239858271 -2806082 + L1ME1 LINE L1 5941 6333 -1 324 318 75 17 chr1 239858889 239859062 -2805291 - L1ME4a LINE L1 -64 6057 5875 270 268 0 28 chr1 239859127 239859198 -2805155 - 7SK RNA RNA -123 70 2 1423 261 58 33 chr1 239859520 239860010 -2804343 + L2 LINE L2 2296 2798 -516 870 226 139 14 chr1 239860010 239860186 -2804167 + MER5C DNA MER1_type 2 155 -169 1636 170 25 11 chr1 239860186 239860463 -2803890 - AluJb SINE Alu -31 281 1 870 226 139 14 chr1 239860463 239860573 -2803780 + MER5C DNA MER1_type 155 324 0 433 284 177 16 chr1 239860578 239860895 -2803458 + L2 LINE L2 2806 3173 -140 394 352 122 5 chr1 239862227 239862440 -2801913 + L2 LINE L2 2603 2840 -474 2656 42 0 0 chr1 239863169 239863476 -2800877 + AluY SINE Alu 1 307 -4 2213 115 0 7 chr1 239864896 239865192 -2799161 + AluSx SINE Alu 1 294 -18 801 208 132 14 chr1 239865478 239865690 -2798663 - MIR SINE MIR -19 243 7 1639 293 142 25 chr1 239867202 239868115 -2796238 - L2 LINE L2 -56 3257 2232 312 326 106 53 chr1 239868849 239869076 -2795277 + L2 LINE L2 3015 3253 -19 1705 159 10 17 chr1 239869079 239869374 -2794979 - AluJo SINE Alu -17 295 3 5140 150 59 21 chr1 239871543 239872680 -2791673 + L1MA7 LINE L1 5096 6285 -6 1314 138 142 18 chr1 239873127 239873352 -2791001 + AluJb SINE Alu 1 253 -59 28 0 0 0 chr1 239873524 239873552 -2790801 + AT_rich Low_complexity Low_complexity 1 28 0 1641 103 13 8 chr1 239875450 239875684 -2788669 + AluSg/x SINE Alu 71 305 -5 2101 112 3 13 chr1 239875858 239876161 -2788192 + AluSc SINE Alu 1 300 -9 217 384 10 0 chr1 239876315 239876414 -2787939 + L2 LINE L2 2949 3048 -224 25044 155 21 30 chr1 239876482 239877080 -2787273 + L1PA10 LINE L1 685 1287 -5196 252 59 0 0 chr1 239877080 239877114 -2787239 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 25044 155 21 30 chr1 239877114 239878032 -2786321 + L1PA10 LINE L1 1287 2211 -4272 2180 125 0 7 chr1 239878032 239878337 -2786016 - AluSx SINE Alu -9 303 1 25044 155 21 30 chr1 239878337 239882647 -2781706 + L1PA10 LINE L1 2211 6481 -2 246 286 0 0 chr1 239883469 239883518 -2780835 - L2 LINE L2 -19 3294 3246 231 235 74 0 chr1 239884353 239884434 -2779919 + MIR SINE MIR 168 254 -8 293 118 78 0 chr1 239884492 239884543 -2779810 - HsTC2 DNA Tc2 -39 1859 1805 950 139 125 37 chr1 239884679 239884895 -2779458 + MER31A LTR ERV1 7 241 -244 3219 217 42 98 chr1 239884895 239886263 -2778090 + L1M2 LINE L1 1 1465 -5384 2094 125 3 3 chr1 239886263 239886558 -2777795 + AluSx SINE Alu 1 295 -17 3219 217 42 98 chr1 239886558 239886832 -2777521 + L1M2 LINE L1 1465 1753 -5096 1273 165 84 0 chr1 239886868 239887105 -2777248 + MER31A LTR ERV1 229 485 0 2235 53 0 0 chr1 239887993 239888255 -2776098 + AluY SINE Alu 35 296 -15 2205 92 0 3 chr1 239890091 239890375 -2773978 - AluSg SINE Alu -11 299 17 429 109 0 0 chr1 239890426 239890490 -2773863 + (GA)n Simple_repeat Simple_repeat 2 65 0 276 366 61 0 chr1 239891287 239891418 -2772935 - L2 LINE L2 0 3272 3134 309 315 115 18 chr1 239891606 239891892 -2772461 + L2 LINE L2 2127 2440 -874 496 323 50 5 chr1 239893975 239894173 -2770180 - MIR SINE MIR -48 214 8 235 286 125 42 chr1 239894266 239894432 -2769921 - MER5A DNA MER1_type 0 178 17 306 0 0 0 chr1 239894521 239894555 -2769798 + (CA)n Simple_repeat Simple_repeat 2 35 0 398 273 107 21 chr1 239894677 239894864 -2769489 + MIR SINE MIR 23 225 -37 324 270 74 65 chr1 239895100 239895439 -2768914 + MLT1K LTR MaLR 131 556 -32 194 309 25 12 chr1 239895592 239895673 -2768680 + L2 LINE L2 2945 3026 -246 22 35 0 0 chr1 239896311 239896340 -2768013 + AT_rich Low_complexity Low_complexity 1 29 0 1865 133 3 68 chr1 239896480 239896804 -2767549 - AluJo SINE Alu -9 303 1 1254 175 13 9 chr1 239897059 239897288 -2767065 + MLT1D LTR MaLR 267 496 -9 231 182 0 18 chr1 239897581 239897636 -2766717 - L2 LINE L2 0 3272 3219 1165 259 82 23 chr1 239897814 239898204 -2766149 - MLT1F1 LTR MaLR -41 526 114 256 234 0 0 chr1 239898220 239898280 -2766073 - MLT1H LTR MaLR -358 191 96 256 234 0 0 chr1 239898287 239898347 -2766006 - MLT1H LTR MaLR -358 191 96 256 234 0 0 chr1 239898354 239898414 -2765939 - MLT1H LTR MaLR -358 191 96 256 234 0 0 chr1 239898421 239898481 -2765872 - MLT1H LTR MaLR -358 191 96 256 234 0 0 chr1 239898488 239898548 -2765805 - MLT1H LTR MaLR -358 191 96 256 234 0 0 chr1 239898555 239898615 -2765738 - MLT1H LTR MaLR -358 191 96 627 277 7 7 chr1 239898622 239898777 -2765576 - MLT1F LTR MaLR -387 155 1 705 326 16 0 chr1 239899451 239899693 -2764660 - MIR SINE MIR -9 253 8 756 183 0 0 chr1 239899802 239899928 -2764425 + FLAM_A SINE Alu 1 126 -7 633 90 0 0 chr1 239899928 239900017 -2764336 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 1374 161 42 0 chr1 239900019 239900279 -2764074 + L1MB3 LINE L1 5913 6183 0 1472 98 0 0 chr1 239901193 239901377 -2762976 + AluSc SINE Alu 1 184 -125 655 62 0 0 chr1 239901378 239901459 -2762894 + AluSc SINE Alu 218 298 -11 262 347 0 0 chr1 239902861 239902956 -2761397 + L2 LINE L2 3171 3265 -7 2938 214 55 3 chr1 239904829 239905519 -2758834 + L1MB4 LINE L1 5455 6180 0 688 279 5 5 chr1 239905674 239905879 -2758474 - MIR SINE MIR -21 241 38 186 321 0 0 chr1 239906202 239906255 -2758098 - L2 LINE L2 -5 3267 3215 * 254 245 96 11 chr1 239906253 239906347 -2758006 + MIR SINE MIR 94 195 -67 256 297 11 11 chr1 239906625 239906716 -2757637 + GA-rich Low_complexity Low_complexity 2 92 0 2514 53 0 0 chr1 239908493 239908794 -2755559 - AluY SINE Alu -10 301 1 713 25 0 0 chr1 239908794 239908875 -2755478 - AluY SINE Alu -177 134 54 1491 75 0 0 chr1 239908875 239909062 -2755291 - AluY SINE Alu -124 187 1 803 188 0 0 chr1 239909070 239909224 -2755129 - FRAM SINE Alu -12 154 1 25 31 0 0 chr1 239910038 239910070 -2754283 + AT_rich Low_complexity Low_complexity 1 32 0 413 245 191 11 chr1 239910303 239910491 -2753862 + MIR SINE MIR 20 241 -21 1811 155 0 14 chr1 239911163 239911459 -2752894 - AluJb SINE Alu -20 292 1 286 275 158 8 chr1 239911695 239911815 -2752538 + MIR SINE MIR 34 171 -91 1854 144 7 27 chr1 239913838 239914137 -2750216 + AluJb SINE Alu 1 293 -19 1500 169 7 41 chr1 239915597 239915892 -2748461 + AluJb SINE Alu 1 285 -27 2000 71 82 14 chr1 239916303 239916585 -2747768 - AluY SINE Alu -10 301 1 239 366 32 8 chr1 239916640 239916763 -2747590 + L2 LINE L2 2924 3049 -223 1193 128 51 0 chr1 239916800 239916995 -2747358 + Tigger7 DNA MER2_type 2280 2484 -3 284 218 28 113 chr1 239917012 239917154 -2747199 - L1ME3A LINE L1 -219 5951 5822 872 153 0 0 chr1 239917294 239917425 -2746928 - FLAM_C SINE Alu -2 131 1 242 224 0 0 chr1 239917831 239917880 -2746473 + CT-rich Low_complexity Low_complexity 3 51 0 217 236 0 18 chr1 239919334 239919389 -2744964 - MIR SINE MIR -107 155 102 440 333 68 55 chr1 239919662 239919971 -2744382 + L2 LINE L2 2934 3246 -26 211 244 90 26 chr1 239920027 239920105 -2744248 + L3 LINE CR1 1416 1498 -79 1711 167 0 50 chr1 239920108 239920332 -2744021 - AluSx SINE Alu -5 307 102 311 0 26 0 chr1 239920332 239920371 -2743982 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1711 167 0 50 chr1 239920371 239920469 -2743884 - AluSx SINE Alu -210 102 1 209 211 119 101 chr1 239920631 239920740 -2743613 + MIR SINE MIR 38 148 -60 1897 159 3 7 chr1 239920985 239921286 -2743067 - AluJb SINE Alu -12 300 1 27 29 0 0 chr1 239921293 239921327 -2743026 + AT_rich Low_complexity Low_complexity 1 34 0 1415 145 129 24 chr1 239921679 239921959 -2742394 + AluJb SINE Alu 1 307 0 294 302 43 9 chr1 239923010 239923126 -2741227 + L2 LINE L2 3193 3312 -1 315 224 13 13 chr1 239923160 239923236 -2741117 - MIR SINE MIR -76 186 111 761 154 8 0 chr1 239924251 239924368 -2739985 + L1MCa LINE L1 6 123 -6303 386 216 40 111 chr1 239924371 239924497 -2739856 + L1MA7 LINE L1 6170 6296 -1 5901 160 71 52 chr1 239924497 239925148 -2739205 + L1MCa LINE L1 118 755 -5671 2282 164 34 7 chr1 239925148 239925563 -2738790 - MSTB LTR MaLR 0 426 1 5901 160 71 52 chr1 239925563 239926656 -2737697 + L1MCa LINE L1 755 2299 -4127 3212 164 33 11 chr1 239926657 239927267 -2737086 + L1MC1 LINE L1 5705 6327 -6 1562 171 19 7 chr1 239927386 239927655 -2736698 - AluJo SINE Alu -21 291 20 189 297 110 22 chr1 239929550 239929641 -2734712 + L2 LINE L2 2919 3017 -255 381 331 22 7 chr1 239929791 239929930 -2734423 + MIR SINE MIR 20 160 -102 6850 62 19 1 chr1 239931137 239932662 -2731691 + L1PA7 LINE L1 4610 6154 0 291 270 61 26 chr1 239932851 239932966 -2731387 + L2 LINE L2 3143 3261 -11 373 292 79 46 chr1 239933001 239933217 -2731136 - MIR SINE MIR -36 226 4 227 296 26 59 chr1 239933599 239933751 -2730602 + MIR SINE MIR 7 153 -109 469 312 113 51 chr1 239933766 239934180 -2730173 + MLT1J2 LTR MaLR 1 440 -10 204 233 0 0 chr1 239934198 239934241 -2730112 + L2 LINE L2 3253 3295 -18 333 307 61 47 chr1 239936714 239937010 -2727343 + L2 LINE L2 2571 2870 -444 2235 113 7 0 chr1 239937074 239937374 -2726979 + AluSx SINE Alu 1 302 -10 378 246 47 47 chr1 239937581 239937752 -2726601 - MIR SINE MIR -83 179 9 2200 122 3 0 chr1 239938893 239939204 -2725149 + AluSx SINE Alu 1 312 0 332 317 29 0 chr1 239940214 239940318 -2724035 - MIR3 SINE MIR -13 195 89 2066 148 0 0 chr1 239942260 239942563 -2721790 - AluSx SINE Alu -9 303 1 2093 117 13 0 chr1 239943126 239943424 -2720929 + AluSg SINE Alu 1 302 -8 1484 222 143 18 chr1 239943809 239944381 -2719972 + LTR48B LTR ERV1 1 644 0 2278 169 117 19 chr1 239944513 239945053 -2719300 - L1MB3 LINE L1 -4 6179 5587 861 143 0 0 chr1 239945204 239945337 -2719016 + FLAM_A SINE Alu 1 133 0 2422 103 0 0 chr1 239945384 239945696 -2718657 + AluSq SINE Alu 1 312 -1 231 133 0 67 chr1 239946152 239946197 -2718156 - L1MB3 LINE L1 -504 5617 5576 234 128 21 0 chr1 239946252 239946299 -2718054 - L1MC4 LINE L1 0 8042 7995 1552 214 190 18 chr1 239946313 239946875 -2717478 - L1MC4 LINE L1 -143 7899 7241 1671 223 121 8 chr1 239946889 239947361 -2716992 - L1MC4 LINE L1 -982 7060 6536 1672 193 7 3 chr1 239947690 239947986 -2716367 - AluJo SINE Alu -14 298 2 852 217 20 15 chr1 239948221 239948424 -2715929 + MER20 DNA MER1_type 1 204 -15 21 0 0 0 chr1 239948793 239948814 -2715539 + AT_rich Low_complexity Low_complexity 1 21 0 198 143 0 0 chr1 239948852 239948887 -2715466 + (TA)n Simple_repeat Simple_repeat 1 35 0 523 278 78 41 chr1 239949680 239949928 -2714425 - MIR SINE MIR 0 262 13 543 275 19 13 chr1 239951465 239951662 -2712691 + MIR SINE MIR 1 262 0 270 253 44 33 chr1 239952770 239952861 -2711492 + MIR SINE MIR 20 111 -151 333 0 0 0 chr1 239952891 239952928 -2711425 + (TG)n Simple_repeat Simple_repeat 2 38 0 1738 134 18 88 chr1 239954774 239955103 -2709250 + AluSx SINE Alu 1 306 -6 9195 153 30 4 chr1 239955305 239956958 -2707395 + Tigger1 DNA MER2_type 2 1697 -721 816 178 25 35 chr1 239956958 239957155 -2707198 + L1MA5 LINE L1 3287 3481 -2665 * 5113 163 57 64 chr1 239957145 239958314 -2706039 + L1MA5 LINE L1 4119 5290 -1010 2328 100 3 3 chr1 239958314 239958625 -2705728 + AluSx SINE Alu 1 311 -1 5113 163 57 64 chr1 239958625 239959629 -2704724 + L1MA5 LINE L1 5290 6300 0 21 0 0 0 chr1 239960251 239960272 -2704081 + AT_rich Low_complexity Low_complexity 1 21 0 2343 81 0 0 chr1 239960380 239960677 -2703676 + AluY SINE Alu 1 297 -14 437 309 7 46 chr1 239961839 239962025 -2702328 + MIR3 SINE MIR 2 181 -63 2307 175 31 10 chr1 239962041 239962527 -2701826 + L1MD1 LINE L1 5599 6094 -148 2024 84 8 4 chr1 239962541 239962804 -2701549 + AluSx SINE Alu 1 264 -48 226 312 101 40 chr1 239962974 239963173 -2701180 + L2 LINE L2 2447 2657 -657 4497 139 55 51 chr1 239963196 239964059 -2700294 + L1PA16 LINE L1 4873 5743 -423 210 71 0 0 chr1 239964059 239964087 -2700266 + (TA)n Simple_repeat Simple_repeat 1 28 0 4497 139 55 51 chr1 239964087 239964504 -2699849 + L1PA16 LINE L1 5743 6157 -9 217 200 0 0 chr1 239965888 239965928 -2698425 - L2 LINE L2 -13 3259 3220 2325 107 0 3 chr1 239967165 239967473 -2696880 - AluSx SINE Alu -5 307 1 776 153 0 0 chr1 239967722 239967859 -2696494 - L1MA4A LINE L1 -11 6292 6156 248 286 54 18 chr1 239968025 239968137 -2696216 + MER20 DNA MER1_type 87 202 -17 236 290 161 21 chr1 239968190 239968283 -2696070 - L2 LINE L2 -8 3264 3159 826 215 105 54 chr1 239968425 239968774 -2695579 - MLT1A2 LTR MaLR 0 374 1 1317 149 47 4 chr1 239969846 239970081 -2694272 - MER7A DNA MER2_type -102 244 2 1204 204 9 0 chr1 239972934 239973154 -2691199 + MER58A DNA MER1_type 3 224 0 391 243 171 61 chr1 239973306 239973586 -2690767 - LTR33 LTR ERVL -71 450 140 1439 247 76 7 chr1 239973645 239974090 -2690263 + L1MC4a LINE L1 5376 5851 -1957 2441 68 0 34 chr1 239974173 239974495 -2689858 + AluY SINE Alu 1 311 0 216 128 21 85 chr1 239976908 239976955 -2687398 - L2 LINE L2 -16 3256 3213 753 171 20 7 chr1 239977049 239977201 -2687152 - L1MD1 LINE L1 -2 6240 6087 46 0 0 0 chr1 239977201 239977247 -2687106 + AT_rich Low_complexity Low_complexity 1 46 0 181 329 79 33 chr1 239977601 239977753 -2686600 + L2 LINE L2 2947 3105 -167 7753 52 8 0 chr1 239979815 239981562 -2682791 + L1PA5 LINE L1 4390 6145 -9 220 100 60 0 chr1 239981562 239981612 -2682741 + (TA)n Simple_repeat Simple_repeat 2 54 0 227 288 77 45 chr1 239981659 239982191 -2682162 + L1ME LINE L1 4201 4749 -1397 1863 163 7 10 chr1 239982491 239982791 -2681562 + AluJb SINE Alu 3 301 -11 404 282 174 45 chr1 239982918 239983287 -2681066 + L1ME LINE L1 5192 5615 -743 232 294 73 7 chr1 239983341 239983477 -2680876 + L1ME LINE L1 5671 5815 -306 577 282 40 20 chr1 239983511 239983713 -2680640 + MIR SINE MIR 3 208 -54 2325 48 0 31 chr1 239984220 239984538 -2679815 - AluY SINE Alu 0 309 1 1760 173 33 16 chr1 239986047 239986354 -2677999 - AluJb SINE Alu 0 312 1 284 270 60 50 chr1 239987622 239987722 -2676631 + MIR SINE MIR 12 112 -150 1289 159 9 44 chr1 239987888 239988115 -2676238 + AluJo SINE Alu 1 219 -93 2430 227 79 15 chr1 239988143 239988603 -2675750 + L1MD2 LINE L1 4500 4929 -1237 650 237 8 0 chr1 239988603 239988734 -2675619 + FLAM_A SINE Alu 1 132 -1 2430 227 79 15 chr1 239988734 239989676 -2674677 + L1MD2 LINE L1 4929 6018 -148 4411 183 9 41 chr1 239989682 239989827 -2674526 + L1MB3 LINE L1 5352 5500 -683 2477 68 0 3 chr1 239989827 239990134 -2674219 + AluY SINE Alu 1 306 -5 4411 183 9 41 chr1 239990134 239990246 -2674107 + L1MB3 LINE L1 5500 5614 -569 656 211 15 45 chr1 239990246 239990379 -2673974 + FLAM_A SINE Alu 1 129 -4 4411 183 9 41 chr1 239990379 239991133 -2673220 + L1MB3 LINE L1 5614 6182 -1 221 284 57 45 chr1 239991357 239991445 -2672908 - MIR SINE MIR -68 140 52 762 120 11 3 chr1 239991588 239991710 -2672643 + L1MA5 LINE L1 6166 6297 0 560 226 132 85 chr1 239991823 239991951 -2672402 + MIR SINE MIR 9 130 -132 548 248 41 0 chr1 239991951 239992072 -2672281 + FLAM_A SINE Alu 2 127 -6 560 226 132 85 chr1 239992072 239992178 -2672175 + MIR SINE MIR 130 254 -8 180 111 0 0 chr1 239992311 239992338 -2672015 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 5213 145 39 6 chr1 239992405 239993267 -2671086 + L1MC1 LINE L1 5362 6252 -81 290 258 148 58 chr1 239993413 239993568 -2670785 + MIR SINE MIR 16 184 -78 889 241 52 5 chr1 239994305 239994517 -2669836 + MER58A DNA MER1_type 2 223 -1 232 303 91 20 chr1 239994542 239994641 -2669712 + L2 LINE L2 3189 3294 -19 1554 197 32 4 chr1 239995617 239995896 -2668457 - AluJo SINE Alu -25 287 1 181 274 151 27 chr1 239997760 239997833 -2666520 - L3b LINE CR1 -94 1489 1408 186 238 127 0 chr1 240001760 240001823 -2662530 - MIR SINE MIR -112 150 80 24 32 0 0 chr1 240004063 240004094 -2660259 + AT_rich Low_complexity Low_complexity 1 31 0 792 237 16 53 chr1 240004220 240004465 -2659888 + Ricksha_b DNA DNA 9 244 -1010 5375 187 30 8 chr1 240005658 240006692 -2657661 + Ricksha_b DNA DNA 183 1567 -1714 1822 168 0 0 chr1 240006692 240006984 -2657369 + AluJb SINE Alu 12 303 -9 5375 187 30 8 chr1 240006984 240007073 -2657280 + Ricksha_b DNA DNA 1567 1653 -28 1309 121 116 5 chr1 240007220 240007427 -2656926 - MER30 DNA MER1_type 0 230 1 22 0 0 0 chr1 240007602 240007624 -2656729 + AT_rich Low_complexity Low_complexity 1 22 0 1216 253 123 47 chr1 240007665 240008160 -2656193 + L1ME LINE L1 471 1052 -5478 342 0 0 0 chr1 240008160 240008198 -2656155 + (CA)n Simple_repeat Simple_repeat 2 39 0 1216 253 123 47 chr1 240008198 240008507 -2655846 + L1ME LINE L1 1052 1336 -5194 327 181 0 13 chr1 240008616 240008693 -2655660 + MLT1D LTR MaLR 389 498 -7 1285 245 64 31 chr1 240008696 240009204 -2655149 + L1ME LINE L1 1854 2448 -4160 24 0 0 0 chr1 240010767 240010791 -2653562 + AT_rich Low_complexity Low_complexity 1 24 0 1018 177 103 8 chr1 240011467 240011764 -2652589 + LTR54 LTR ERV1 3 388 -122 314 350 63 40 chr1 240011866 240012089 -2652264 - L2 LINE L2 -640 2674 2447 411 279 66 15 chr1 240012097 240012233 -2652120 - L2 LINE L2 -3 3310 3168 510 43 57 0 chr1 240012274 240012344 -2652009 - MER41A LTR ERV1 -81 473 400 1805 118 18 154 chr1 240013401 240013791 -2650562 + MER1B DNA MER1_type 1 337 0 438 257 7 71 chr1 240013989 240014129 -2650224 + L2 LINE L2 3161 3291 -22 1903 167 0 3 chr1 240014633 240014932 -2649421 - AluSx SINE Alu -14 298 1 430 216 186 10 chr1 240015026 240015123 -2649230 + FLAM_C SINE Alu 12 125 -18 2149 202 52 111 chr1 240015231 240015923 -2648430 + LTR8A LTR ERV1 34 681 -46 6934 107 4 9 chr1 240015923 240016897 -2647456 + LTR5 LTR ERVK 1 969 0 2149 202 52 111 chr1 240016897 240016942 -2647411 + LTR8A LTR ERV1 681 727 0 943 247 55 82 chr1 240017178 240017458 -2646895 + LTR37B LTR ERV1 9 272 -196 1922 160 19 19 chr1 240017458 240017770 -2646583 - AluJb SINE Alu 0 312 1 943 247 55 82 chr1 240017770 240017962 -2646391 + LTR37B LTR ERV1 272 468 0 766 224 67 74 chr1 240018585 240019025 -2645328 + MER39 LTR ERV1 1 609 -96 530 279 8 0 chr1 240019304 240019433 -2644920 - MER94 DNA DNA 0 134 5 457 250 15 38 chr1 240019823 240019955 -2644398 + L1M4b LINE L1 1245 1373 -5486 3021 81 16 0 chr1 240019975 240020356 -2643997 - L1PA10 LINE L1 -4 6164 5778 338 351 61 0 chr1 240020552 240020683 -2643670 + L2 LINE L2 3134 3272 0 429 109 0 0 chr1 240021480 240021544 -2642809 + (TC)n Simple_repeat Simple_repeat 2 65 0 2485 32 0 4 chr1 240021595 240021875 -2642478 + AluY SINE Alu 17 295 -16 1990 128 21 3 chr1 240022242 240022530 -2641823 - AluJb SINE Alu -19 293 1 992 130 34 45 chr1 240023704 240023757 -2640596 + LTR9 LTR ERV1 438 490 -122 1959 154 6 3 chr1 240023757 240024068 -2640285 - AluSx SINE Alu 0 312 1 992 130 34 45 chr1 240024068 240024191 -2640162 + LTR9 LTR ERV1 490 612 0 2484 168 30 5 chr1 240024206 240024647 -2639706 + HUERS-P3 LTR ERV1 15 466 -8453 494 147 42 11 chr1 240024647 240024742 -2639611 + LTR9 LTR ERV1 422 519 -93 1160 191 5 0 chr1 240025652 240025872 -2638481 + L1 LINE L1 4780 5000 -1146 288 325 100 0 chr1 240026061 240026181 -2638172 + L2 LINE L2 3136 3267 -5 536 274 72 0 chr1 240027170 240027323 -2637030 + MIR3 SINE MIR 13 176 -32 2203 164 222 37 chr1 240027334 240027852 -2636501 - LTR18B LTR ERVL 0 614 1 2174 95 0 7 chr1 240029902 240030234 -2634119 + AluSg SINE Alu 1 330 0 274 307 60 60 chr1 240030639 240030789 -2633564 + L2 LINE L2 3104 3253 -19 2247 247 71 42 chr1 240031156 240031353 -2633000 + L1MEc LINE L1 30 220 -6176 1826 193 44 16 chr1 240031353 240031633 -2632720 + MER83C LTR ERV1 1 295 -78 2120 110 0 3 chr1 240031633 240031932 -2632421 - AluSc SINE Alu -11 298 1 1826 193 44 16 chr1 240031932 240032014 -2632339 + MER83C LTR ERV1 295 373 0 2247 247 71 42 chr1 240032014 240032580 -2631773 + L1MEc LINE L1 220 815 -5581 2314 107 0 3 chr1 240032859 240033167 -2631186 + AluSq SINE Alu 1 307 -6 423 0 0 0 chr1 240033204 240033251 -2631102 + (CA)n Simple_repeat Simple_repeat 2 48 0 827 53 0 0 chr1 240034691 240034786 -2629567 - L1PA10 LINE L1 -10 6158 6064 529 236 82 121 chr1 240035753 240036012 -2628341 + MLT1J LTR MaLR 170 413 -98 1551 174 80 7 chr1 240036012 240036300 -2628053 - AluJo SINE Alu -3 309 1 529 236 82 121 chr1 240036300 240036396 -2627957 + MLT1J LTR MaLR 413 511 0 2196 141 0 0 chr1 240036403 240036715 -2627638 - AluSx SINE Alu 0 312 1 1684 197 47 44 chr1 240036846 240037324 -2627029 - MER39 LTR ERV1 0 707 1 272 257 99 20 chr1 240037559 240037660 -2626693 + L2 LINE L2 3171 3279 -34 371 308 41 47 chr1 240037763 240037935 -2626418 + L2 LINE L2 3087 3257 -15 189 0 0 0 chr1 240038435 240038456 -2625897 + (A)n Simple_repeat Simple_repeat 1 21 0 1622 153 4 36 chr1 240039130 240039411 -2624942 + AluJo SINE Alu 1 272 -40 2098 94 0 14 chr1 240040288 240040575 -2623778 + AluSc SINE Alu 1 283 -26 423 0 0 0 chr1 240040575 240040622 -2623731 + (CA)n Simple_repeat Simple_repeat 2 48 0 484 227 45 0 chr1 240041200 240041310 -2623043 + MIR3 SINE MIR 48 162 -46 222 37 0 0 chr1 240041346 240041373 -2622980 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1936 30 51 13 chr1 240041854 240042090 -2622263 + AluY SINE Alu 54 298 -13 26 50 0 0 chr1 240042526 240042566 -2621787 + AT_rich Low_complexity Low_complexity 1 40 0 1217 245 163 16 chr1 240043204 240043653 -2620700 + MER20B DNA MER1_type 1 515 -268 549 277 88 8 chr1 240043772 240044021 -2620332 + MER20B DNA MER1_type 515 783 0 2105 124 0 0 chr1 240044615 240044927 -2619426 + AluSx SINE Alu 1 312 0 635 306 49 49 chr1 240045138 240045445 -2618908 + L2 LINE L2 3006 3312 -1 763 297 22 22 chr1 240045458 240045687 -2618666 - MIR SINE MIR -12 250 22 1703 157 28 11 chr1 240045795 240046082 -2618271 - AluJb SINE Alu -3 309 18 442 141 20 71 chr1 240046154 240046253 -2618100 + L1MC1 LINE L1 6240 6333 0 383 366 32 11 chr1 240047736 240047922 -2616431 + L2 LINE L2 2599 2788 -526 211 401 75 37 chr1 240048056 240048350 -2616003 + L2 LINE L2 2968 3272 0 877 334 113 26 chr1 240048736 240049311 -2615042 + L3 LINE CR1 230 854 -723 1989 199 27 15 chr1 240049351 240050160 -2614193 + L1M3 LINE L1 4841 5663 -520 288 0 0 0 chr1 240050172 240050209 -2614144 + L1M LINE L1 5255 5291 -951 22 0 0 0 chr1 240050867 240050889 -2613464 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr1 240051426 240051465 -2612888 + AT_rich Low_complexity Low_complexity 1 39 0 263 187 27 53 chr1 240052639 240052714 -2611639 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 222 248 152 38 chr1 240052803 240052908 -2611445 - L3b LINE CR1 -21 1562 1446 263 252 0 9 chr1 240053661 240053768 -2610585 + (TGAA)n Simple_repeat Simple_repeat 3 108 0 223 306 16 0 chr1 240053850 240053912 -2610441 + MER91 DNA MER1_type 77 139 -1 490 267 15 0 chr1 240054220 240054355 -2609998 - L1MB7 LINE L1 -76 6108 5972 2391 68 0 0 chr1 240055487 240055782 -2608571 - AluY SINE Alu -16 295 1 23 33 0 0 chr1 240055782 240055812 -2608541 + AT_rich Low_complexity Low_complexity 1 30 0 328 292 119 36 chr1 240057270 240057489 -2606864 + MIR SINE MIR 26 262 0 1516 192 63 3 chr1 240057665 240057952 -2606401 - AluJo SINE Alu -8 304 1 195 281 41 99 chr1 240058192 240058313 -2606040 - MIR SINE MIR -147 115 2 189 327 0 0 chr1 240058623 240058675 -2605678 - MIR SINE MIR -10 252 201 2580 189 59 13 chr1 240059159 240059831 -2604522 - Tigger7 DNA MER2_type 0 2587 1 354 23 0 0 chr1 240060184 240060227 -2604126 + (CA)n Simple_repeat Simple_repeat 2 44 0 1518 187 40 4 chr1 240060453 240060726 -2603627 + AluJb SINE Alu 1 283 -29 198 0 0 0 chr1 240060726 240060748 -2603605 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 859 195 19 0 chr1 240062071 240062225 -2602128 - FAM SINE Alu -6 43 1 314 328 43 0 chr1 240062264 240062380 -2601973 + MIR SINE MIR 84 204 -58 593 303 45 41 chr1 240062642 240062886 -2601467 + MIR SINE MIR 18 262 0 267 314 119 17 chr1 240062916 240063034 -2601319 - MIR SINE MIR -125 137 8 233 317 49 12 chr1 240063109 240063191 -2601162 - L2 LINE L2 -51 3221 3137 5670 123 149 25 chr1 240064519 240065656 -2598697 + MER52C LTR ERV1 1 1278 0 186 244 49 0 chr1 240065732 240065773 -2598580 - L2 LINE L2 -30 3242 3200 338 287 20 0 chr1 240066075 240066176 -2598177 - L2 LINE L2 -1501 1813 1711 430 321 58 16 chr1 240066229 240066419 -2597934 - MIR3 SINE MIR -9 199 2 2334 101 0 0 chr1 240068023 240068320 -2596033 + AluSg SINE Alu 1 297 -13 418 296 117 58 chr1 240068447 240068670 -2595683 + MIR SINE MIR 20 255 -7 399 157 191 95 chr1 240069850 240069997 -2594356 + MIR SINE MIR 102 262 0 864 137 6 60 chr1 240070539 240070569 -2593784 - L1M4 LINE L1 -713 5461 5431 2398 84 0 3 chr1 240070569 240070877 -2593476 - AluSx SINE Alu -5 307 1 864 137 6 60 chr1 240070877 240071028 -2593325 - L1M4 LINE L1 -743 5431 5290 327 308 211 5 chr1 240071086 240071294 -2593059 + MIR SINE MIR 2 252 -10 22 35 0 0 chr1 240071487 240071516 -2592837 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr1 240072448 240072471 -2591882 + (A)n Simple_repeat Simple_repeat 1 23 0 1979 125 24 0 chr1 240072693 240072982 -2591371 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 240073233 240073255 -2591098 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr1 240073543 240073581 -2590772 + AT_rich Low_complexity Low_complexity 1 38 0 2335 150 27 20 chr1 240074524 240074795 -2589558 - Tigger3b DNA MER2_type -1798 1230 953 1617 226 0 0 chr1 240074795 240075092 -2589261 + AluJo SINE Alu 1 297 -15 2335 150 27 20 chr1 240075092 240075260 -2589093 - Tigger3b DNA MER2_type -2075 953 788 347 127 0 16 chr1 240075260 240075323 -2589030 - Tigger3b DNA MER2_type -382 849 788 289 131 33 16 chr1 240075323 240075384 -2588969 - Tigger3b DNA MER2_type -382 849 788 408 79 0 16 chr1 240075384 240075447 -2588906 - Tigger3b DNA MER2_type -382 849 788 325 86 86 17 chr1 240075447 240075505 -2588848 - Tigger3b DNA MER2_type -382 849 788 279 148 33 16 chr1 240075505 240075566 -2588787 - Tigger3b DNA MER2_type -382 849 788 384 95 0 16 chr1 240075566 240075629 -2588724 - Tigger3b DNA MER2_type -382 849 788 391 95 0 16 chr1 240075629 240075692 -2588661 - Tigger3b DNA MER2_type -382 849 788 391 95 0 16 chr1 240075692 240075755 -2588598 - Tigger3b DNA MER2_type -382 849 788 289 131 33 16 chr1 240075755 240075816 -2588537 - Tigger3b DNA MER2_type -382 850 789 428 63 0 16 chr1 240075816 240075879 -2588474 - Tigger3b DNA MER2_type -382 849 788 391 95 0 16 chr1 240075879 240075942 -2588411 - Tigger3b DNA MER2_type -382 850 789 347 127 0 16 chr1 240075942 240076005 -2588348 - Tigger3b DNA MER2_type -382 850 789 413 79 0 16 chr1 240076005 240076068 -2588285 - Tigger3b DNA MER2_type -382 849 788 387 95 0 16 chr1 240076068 240076131 -2588222 - Tigger3b DNA MER2_type -382 849 788 391 95 0 16 chr1 240076131 240076194 -2588159 - Tigger3b DNA MER2_type -382 850 789 289 131 33 16 chr1 240076194 240076255 -2588098 - Tigger3b DNA MER2_type -382 850 789 370 111 0 16 chr1 240076255 240076318 -2588035 - Tigger3b DNA MER2_type -382 850 789 383 97 0 16 chr1 240076319 240076381 -2587972 - Tigger3b DNA MER2_type -383 848 788 4125 132 56 21 chr1 240076381 240076880 -2587473 - Tigger3b DNA MER2_type -2179 849 308 1639 203 0 10 chr1 240076880 240077176 -2587177 - AluJo SINE Alu -19 293 1 4125 132 56 21 chr1 240077176 240077494 -2586859 - Tigger3b DNA MER2_type -2720 308 3 1941 151 0 0 chr1 240077507 240077792 -2586561 - AluJb SINE Alu -6 306 22 248 294 22 52 chr1 240078004 240078140 -2586213 + L1ME2 LINE L1 6023 6154 -10 1826 159 7 7 chr1 240079594 240079884 -2584469 - AluJb SINE Alu -17 295 6 198 103 0 0 chr1 240082168 240082197 -2582156 + (GGA)n Simple_repeat Simple_repeat 3 31 0 742 185 0 0 chr1 240083092 240083211 -2581142 + FLAM_C SINE Alu 1 119 -14 412 169 28 17 chr1 240083262 240083439 -2580914 + (TA)n Simple_repeat Simple_repeat 2 180 0 2316 115 0 10 chr1 240083542 240083856 -2580497 + AluY SINE Alu 1 311 0 1684 176 13 23 chr1 240085133 240085434 -2578919 - AluJo SINE Alu -14 298 1 2412 54 14 7 chr1 240086259 240086556 -2577797 + AluY SINE Alu 1 299 -12 299 218 39 51 chr1 240087906 240087984 -2576369 - L2 LINE L2 -2 3311 3235 985 214 15 0 chr1 240088276 240088477 -2575876 + AluJo SINE Alu 86 289 -23 22 0 0 0 chr1 240091102 240091124 -2573229 + AT_rich Low_complexity Low_complexity 1 22 0 900 185 6 34 chr1 240092643 240092821 -2571532 + AluJo SINE Alu 124 296 -16 291 28 0 0 chr1 240093699 240093735 -2570618 + (T)n Simple_repeat Simple_repeat 1 36 0 304 363 136 34 chr1 240094618 240095177 -2569176 + L2 LINE L2 2217 2832 -482 1236 218 82 0 chr1 240095260 240095540 -2568813 + AluJo SINE Alu 1 303 -9 353 252 73 16 chr1 240095653 240095776 -2568577 + L2 LINE L2 3184 3313 0 254 374 154 6 chr1 240096085 240096435 -2567918 + L2 LINE L2 2445 2846 -468 258 257 165 28 chr1 240096998 240097107 -2567246 + MER5C DNA MER1_type 1 124 -200 221 282 28 0 chr1 240097246 240097317 -2567036 + MER5C DNA MER1_type 249 321 -3 1572 163 87 22 chr1 240097551 240097942 -2566411 - MER31A LTR ERV1 -48 418 1 208 309 117 11 chr1 240099454 240099642 -2564711 + MIR SINE MIR 40 247 -15 2390 55 41 0 chr1 240099652 240099943 -2564410 + AluY SINE Alu 1 303 -8 281 298 153 8 chr1 240100820 240100951 -2563402 - L2 LINE L2 -14 3258 3109 218 363 32 38 chr1 240101219 240101376 -2562977 + L2 LINE L2 2642 2797 -517 308 292 64 29 chr1 240102380 240102551 -2561802 - MIR3 SINE MIR -12 196 20 184 341 179 8 chr1 240102973 240103096 -2561257 - L3b LINE CR1 -338 1245 1102 1344 198 20 92 chr1 240104521 240104921 -2559432 + MLT1A2 LTR MaLR 4 374 0 1466 96 5 0 chr1 240105239 240105436 -2558917 - AluSg/x SINE Alu -21 289 92 2491 54 3 22 chr1 240105439 240105752 -2558601 - AluY SINE Alu -4 307 1 247 235 183 26 chr1 240105964 240106079 -2558274 - MIR3 SINE MIR 0 208 76 368 281 125 22 chr1 240106114 240106434 -2557919 - LTR37A LTR ERV1 0 426 74 1197 100 5 5 chr1 240107109 240107308 -2557045 + AluY SINE Alu 11 309 -2 636 117 78 0 chr1 240108421 240108549 -2555804 - L1MB4 LINE L1 -20 6160 6023 1855 169 3 0 chr1 240108671 240108967 -2555386 + AluJb SINE Alu 1 297 -15 633 146 0 19 chr1 240109006 240109109 -2555244 - U6 snRNA snRNA 0 107 7 209 343 109 0 chr1 240109223 240109360 -2554993 - MIR SINE MIR -38 224 73 251 344 22 0 chr1 240110099 240110189 -2554164 + MIR SINE MIR 41 132 -76 2476 82 0 0 chr1 240110297 240110601 -2553752 + AluSg SINE Alu 1 304 -6 249 328 76 25 chr1 240111636 240111755 -2552598 + MIR3 SINE MIR 14 138 -70 502 151 308 14 chr1 240111802 240111948 -2552405 + MER5A DNA MER1_type 1 189 0 1009 177 13 0 chr1 240112083 240112268 -2552085 - AluJo SINE Alu 0 308 122 506 167 0 0 chr1 240112313 240112403 -2551950 - MST-int LTR MaLR -243 1408 1319 884 159 0 21 chr1 240112403 240112548 -2551805 - AluJo SINE Alu -170 142 1 2137 119 0 3 chr1 240114257 240114559 -2549794 - AluSg SINE Alu -9 301 1 753 192 66 30 chr1 240114623 240114821 -2549532 - MER3 DNA MER1_type 0 209 5 195 129 0 0 chr1 240115598 240115629 -2548724 + (CA)n Simple_repeat Simple_repeat 1 31 0 3345 155 115 118 chr1 240116761 240117208 -2547145 + L1MC3 LINE L1 6668 7115 -670 243 212 15 15 chr1 240117208 240117274 -2547079 + MLT1F1 LTR MaLR 36 101 -466 3345 155 115 118 chr1 240117274 240117881 -2546472 + L1MC3 LINE L1 7115 7784 -1 181 280 60 0 chr1 240117950 240118000 -2546353 + MIR SINE MIR 11 63 -199 1192 147 15 0 chr1 240118964 240119168 -2545185 - L1PA16 LINE L1 -9 6157 5951 2253 99 13 10 chr1 240121885 240122189 -2542164 + AluSx SINE Alu 1 305 -7 283 192 46 77 chr1 240122197 240122327 -2542026 + L1ME4a LINE L1 5943 6068 -53 22 0 0 0 chr1 240122345 240122367 -2541986 + AT_rich Low_complexity Low_complexity 1 22 0 1790 98 4 0 chr1 240122669 240122903 -2541450 - AluY SINE Alu -76 235 1 186 336 67 48 chr1 240123394 240123498 -2540855 - L2 LINE L2 -13 3259 3154 1973 126 7 33 chr1 240123521 240123823 -2540530 + AluSx SINE Alu 2 295 -17 612 296 73 69 chr1 240124363 240124680 -2539673 - L2 LINE L2 -5 3267 2950 238 354 73 6 chr1 240124677 240124841 -2539512 - L2 LINE L2 -786 2528 2354 * 239 262 252 0 chr1 240125082 240125189 -2539164 - MIR SINE MIR -114 148 15 206 179 77 0 chr1 240126430 240126469 -2537884 + MIR SINE MIR 204 245 -17 668 330 84 28 chr1 240126639 240126997 -2537356 - L2 LINE L2 -4 3309 2932 652 204 0 0 chr1 240127675 240127788 -2536565 - FLAM_A SINE Alu -19 114 2 342 345 27 14 chr1 240127791 240127939 -2536414 - MIR SINE MIR -111 151 2 237 345 10 72 chr1 240129186 240129395 -2534958 + L2 LINE L2 2934 3129 -143 1902 73 12 8 chr1 240131999 240132283 -2532070 + AluSx SINE Alu 39 323 0 349 299 0 21 chr1 240132493 240132590 -2531763 - L2 LINE L2 -40 3273 3179 182 273 0 104 chr1 240132655 240132732 -2531621 - L2 LINE L2 -18 3254 3186 439 313 178 12 chr1 240132846 240133172 -2531181 - L2 LINE L2 -1236 2078 1699 2020 112 54 0 chr1 240134532 240134827 -2529526 + AluSq SINE Alu 1 311 -2 198 308 110 22 chr1 240134936 240135027 -2529326 - L2 LINE L2 -4 3268 3170 1642 180 46 19 chr1 240135072 240135445 -2528908 - MLT1B LTR MaLR -7 383 1 422 276 128 26 chr1 240135618 240135883 -2528470 - MER102b DNA MER1_type -1 340 49 405 307 114 0 chr1 240136060 240136174 -2528179 + L2 LINE L2 3142 3268 -4 2188 103 3 0 chr1 240137226 240137518 -2526835 + AluSg SINE Alu 1 293 -17 318 253 138 0 chr1 240137541 240137628 -2526725 + MIR SINE MIR 59 157 -105 21 36 0 0 chr1 240138513 240138541 -2525812 + AT_rich Low_complexity Low_complexity 1 28 0 939 108 15 0 chr1 240340243 240340373 -2323980 + AluSg/x SINE Alu 172 303 -9 371 239 218 7 chr1 240340728 240340870 -2323483 - MIR SINE MIR -59 203 32 183 80 0 0 chr1 240341191 240341216 -2323137 + (GA)n Simple_repeat Simple_repeat 2 26 0 1546 143 34 51 chr1 240341499 240341688 -2322665 - L1MA3 LINE L1 0 6305 6123 2406 93 3 0 chr1 240341688 240341998 -2322355 + AluSx SINE Alu 1 311 -1 1546 143 34 51 chr1 240341998 240342159 -2322194 - L1MA3 LINE L1 -182 6123 5961 1899 124 4 4 chr1 240342262 240342535 -2321818 + AluSg SINE Alu 30 302 -8 868 144 8 0 chr1 240342601 240342733 -2321620 + FLAM_C SINE Alu 1 133 0 1901 162 0 22 chr1 240342746 240343061 -2321292 + AluSx SINE Alu 1 308 -4 2088 132 7 3 chr1 240343107 240343402 -2320951 + AluSx SINE Alu 1 296 -16 226 254 0 0 chr1 240343403 240343458 -2320895 + L1MC4 LINE L1 6649 6703 -1339 519 174 41 0 chr1 240343783 240343881 -2320472 + AluSg/x SINE Alu 196 297 -13 2301 86 7 3 chr1 240344561 240344864 -2319489 - AluY SINE Alu -7 304 1 22 70 0 0 chr1 240344867 240344910 -2319443 + AT_rich Low_complexity Low_complexity 1 43 0 2472 150 76 2 chr1 240345349 240345705 -2318648 - LTR47A LTR ERVL 0 452 59 2681 96 6 3 chr1 240345705 240346068 -2318285 + THE1B LTR MaLR 1 364 0 2472 150 76 2 chr1 240346068 240346132 -2318221 - LTR47A LTR ERVL -393 59 1 1570 172 47 10 chr1 240346626 240346923 -2317430 - AluJo SINE Alu -4 308 1 2385 105 0 0 chr1 240347057 240347361 -2316992 + AluSx SINE Alu 1 304 -8 296 305 157 20 chr1 240347631 240347936 -2316417 - L2 LINE L2 -466 2848 2502 2051 131 7 0 chr1 240348405 240348718 -2315635 - AluSx SINE Alu 0 315 1 493 243 209 0 chr1 240348764 240348941 -2315412 - MIR SINE MIR 0 262 49 2168 89 3 7 chr1 240349338 240349629 -2314724 + AluSc SINE Alu 1 290 -19 941 196 89 41 chr1 240349913 240350184 -2314169 - LTR9 LTR ERV1 -13 599 316 1519 188 31 95 chr1 240350195 240350615 -2313738 - LTR9 LTR ERV1 -219 393 1 246 86 0 0 chr1 240350695 240350730 -2313623 - MIR SINE MIR -111 151 117 217 203 125 109 chr1 240350761 240350889 -2313464 + MIR SINE MIR 1 130 -78 248 289 99 41 chr1 240350942 240351063 -2313290 + L2 LINE L2 3140 3267 -5 288 309 61 55 chr1 240351236 240351417 -2312936 + MIR SINE MIR 25 206 -56 279 288 36 18 chr1 240352704 240352815 -2311538 + L2 LINE L2 3159 3271 -1 2401 70 0 0 chr1 240352904 240353189 -2311164 - AluY SINE Alu -13 298 14 842 151 0 0 chr1 240353558 240353684 -2310669 + FLAM_C SINE Alu 1 126 -7 897 158 94 35 chr1 240353757 240353792 -2310561 + AluJo SINE Alu 87 118 -194 225 0 0 0 chr1 240353792 240353817 -2310536 + (TA)n Simple_repeat Simple_repeat 2 26 0 897 158 94 35 chr1 240353817 240353984 -2310369 + AluJo SINE Alu 118 301 -11 457 202 39 23 chr1 240354021 240354150 -2310203 - MER20B DNA MER1_type 0 783 653 3417 127 3 64 chr1 240354593 240354723 -2309630 + L1MA4 LINE L1 5198 5334 -966 2136 108 10 3 chr1 240354723 240355011 -2309342 + AluSq SINE Alu 1 290 -23 3417 127 3 64 chr1 240355011 240355109 -2309244 + L1MA4 LINE L1 5334 5436 -864 2283 73 3 3 chr1 240355109 240355398 -2308955 + AluSc SINE Alu 1 289 -20 3417 127 3 64 chr1 240355398 240355790 -2308563 + L1MA4 LINE L1 5436 5785 -515 405 0 0 0 chr1 240355790 240355835 -2308518 + (CA)n Simple_repeat Simple_repeat 2 46 0 3417 127 3 64 chr1 240355835 240355878 -2308475 + L1MA4 LINE L1 5785 5829 -471 2060 115 4 4 chr1 240355878 240356157 -2308196 + AluSx SINE Alu 1 279 -33 1290 201 64 0 chr1 240356281 240356530 -2307823 - ERVL LTR ERVL -4953 811 547 1221 29 0 0 chr1 240356530 240356666 -2307687 + AluY SINE Alu 144 279 -32 1017 22 30 0 chr1 240356668 240356803 -2307550 + (TAAAA)n Simple_repeat Simple_repeat 2 140 0 547 232 251 43 chr1 240356879 240356979 -2307374 - ERVL LTR ERVL -5422 342 264 1996 137 3 13 chr1 240356979 240357293 -2307060 - AluY SINE Alu 0 311 1 547 232 251 43 chr1 240357293 240357403 -2306950 - ERVL LTR ERVL -5500 264 88 959 136 0 0 chr1 240357770 240357902 -2306451 + AluSg/x SINE Alu 164 295 -17 2376 89 0 13 chr1 240357916 240358219 -2306134 + AluY SINE Alu 1 299 -12 1836 157 7 10 chr1 240358299 240358598 -2305755 + AluJo SINE Alu 2 299 -13 2234 194 98 6 chr1 240359340 240359810 -2304543 + MLT2B2 LTR ERVL 1 513 -2 2215 99 14 0 chr1 240360257 240360551 -2303802 + AluSq SINE Alu 1 298 -15 617 138 164 17 chr1 240360667 240360783 -2303570 + FLAM_C SINE Alu 1 133 0 238 89 18 54 chr1 240360814 240360870 -2303483 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 628 317 82 40 chr1 240360877 240361401 -2302952 + L1MEc LINE L1 1190 1735 -772 2650 269 54 22 chr1 240361824 240362901 -2301452 + L1MEc LINE L1 2407 3527 -2619 2210 108 0 3 chr1 240362901 240363196 -2301157 + AluSg SINE Alu 1 294 -16 2650 269 54 22 chr1 240363196 240363316 -2301037 + L1MEc LINE L1 3527 3642 -2504 425 205 8 59 chr1 240363374 240363645 -2300708 + GA-rich Low_complexity Low_complexity 1 257 0 310 207 12 61 chr1 240363680 240363762 -2300591 + L1MEc LINE L1 3762 3839 -2307 636 230 40 59 chr1 240363771 240363993 -2300360 + L1MC4 LINE L1 7748 7965 -77 313 224 13 0 chr1 240364172 240364248 -2300105 + L1MC4a LINE L1 3566 3642 -2504 483 231 19 0 chr1 240364306 240364466 -2299887 + GA-rich Low_complexity Low_complexity 3 165 0 310 207 12 61 chr1 240364491 240364573 -2299780 + L1MC4a LINE L1 3762 3839 -2307 672 236 39 56 chr1 240364582 240364815 -2299538 + L1MC4 LINE L1 7748 7976 -66 1018 254 11 21 chr1 240364873 240365157 -2299196 + L1MC4a LINE L1 3837 4117 -2029 366 296 78 37 chr1 240365415 240365658 -2298695 + L1MC4a LINE L1 4456 4708 -1438 876 144 0 0 chr1 240365658 240365783 -2298570 + FLAM_C SINE Alu 1 125 -18 1201 226 21 0 chr1 240365814 240366093 -2298260 + L1MC4a LINE L1 5259 5543 -816 372 249 129 24 chr1 240366095 240366304 -2298049 - L1M3 LINE L1 -676 5504 5274 313 319 17 0 chr1 240366793 240366912 -2297441 + MIR SINE MIR 1 121 -141 1288 214 70 39 chr1 240366969 240367357 -2296996 + MLT1F1 LTR MaLR 121 520 -47 242 224 0 0 chr1 240367704 240367762 -2296591 + L2 LINE L2 3255 3312 -1 287 226 59 29 chr1 240367835 240367937 -2296416 + MIR3 SINE MIR 10 114 -94 1833 153 29 16 chr1 240368080 240368388 -2295965 + AluJb SINE Alu 1 312 0 352 277 16 118 chr1 240368493 240368807 -2295546 + L1MC4a LINE L1 5770 6053 -68 1912 116 56 0 chr1 240369025 240369293 -2295060 + AluSx SINE Alu 12 294 -18 1334 184 6 102 chr1 240369369 240369701 -2294652 + AluJo SINE Alu 2 301 -1 2216 102 10 3 chr1 240370849 240371144 -2293209 + AluSx SINE Alu 1 297 -15 269 327 109 12 chr1 240371352 240371517 -2292836 + MIR SINE MIR 64 244 -18 1633 197 12 27 chr1 240371594 240371924 -2292429 + MLT1A1 LTR MaLR 2 326 -39 947 210 42 19 chr1 240372169 240372383 -2291970 + MER58A DNA MER1_type 6 224 0 254 297 65 14 chr1 240372645 240372783 -2291570 + MIR3 SINE MIR 4 148 -60 311 103 0 17 chr1 240374025 240374083 -2290270 + (TTTTC)n Simple_repeat Simple_repeat 4 60 0 306 348 28 22 chr1 240374319 240374500 -2289853 + MIR SINE MIR 26 207 -55 2187 128 0 0 chr1 240375663 240375959 -2288394 - AluSx SINE Alu -16 296 1 258 145 0 51 chr1 240376155 240376272 -2288081 + (GA)n Simple_repeat Simple_repeat 2 112 0 360 205 0 53 chr1 240376328 240376499 -2287854 + GA-rich Low_complexity Low_complexity 2 163 0 408 147 0 49 chr1 240376500 240376684 -2287669 + (GA)n Simple_repeat Simple_repeat 2 176 0 407 176 0 53 chr1 240376695 240377261 -2287092 + GA-rich Low_complexity Low_complexity 1 536 0 5772 122 7 19 chr1 240377920 240377967 -2286386 - L1PA15 LINE L1 -7 6158 6112 2214 115 0 0 chr1 240377967 240378262 -2286091 - AluSx SINE Alu -17 295 1 5772 122 7 19 chr1 240378262 240379261 -2285092 - L1PA15 LINE L1 -53 6112 5131 1771 130 70 57 chr1 240379261 240379631 -2284722 + THE1C LTR MaLR 1 375 0 5772 122 7 19 chr1 240379631 240379936 -2284417 - L1PA15 LINE L1 -1034 5131 4824 821 191 83 34 chr1 240380103 240380170 -2284183 + AluJo SINE Alu 74 136 -176 2215 102 3 0 chr1 240380170 240380483 -2283870 + AluSp SINE Alu 1 314 0 821 191 83 34 chr1 240380483 240380618 -2283735 + AluJo SINE Alu 136 287 -25 673 289 98 10 chr1 240381254 240381662 -2282691 + L1ME4a LINE L1 5678 6121 0 2534 61 3 13 chr1 240381970 240382282 -2282071 + AluY SINE Alu 1 309 -2 245 139 0 0 chr1 240382317 240382360 -2281993 - Alu SINE Alu 0 301 259 520 114 0 0 chr1 240382367 240382437 -2281916 + AluSq SINE Alu 137 206 -107 279 105 0 0 chr1 240382438 240382476 -2281877 - AluSg/x SINE Alu -65 237 200 2000 132 88 9 chr1 240382813 240383154 -2281199 - ERVL-C1 LTR ERVL -2468 3296 2929 400 152 0 33 chr1 240383453 240383545 -2280808 + GA-rich Low_complexity Low_complexity 2 90 0 3908 108 21 0 chr1 240383545 240384103 -2280250 - ERVL-C1 LTR ERVL -2821 2943 2374 1358 193 64 0 chr1 240384108 240384357 -2279996 - ERVL-C1 LTR ERVL -4953 811 547 1221 29 0 0 chr1 240384357 240384493 -2279860 + AluY SINE Alu 144 279 -32 1017 22 30 0 chr1 240384495 240384630 -2279723 + (TAAAA)n Simple_repeat Simple_repeat 2 140 0 546 230 0 65 chr1 240384706 240384806 -2279547 - ERVL-C1 LTR ERVL -5422 342 252 1708 185 3 13 chr1 240384806 240385120 -2279233 - AluY SINE Alu 0 311 1 546 230 0 65 chr1 240385120 240385158 -2279195 - ERVL-C1 LTR ERVL -5512 252 213 228 214 56 24 chr1 240385213 240385339 -2279014 + L1M4c LINE L1 2169 2298 -4086 261 247 0 0 chr1 240385410 240385467 -2278886 - MLT2C1 LTR ERVL 0 397 349 249 159 0 0 chr1 240385468 240385512 -2278841 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 2142 169 111 23 chr1 240385512 240385944 -2278409 - MLT2B1 LTR ERVL -50 470 1 1577 218 118 33 chr1 240385996 240386626 -2277727 - L1M4c LINE L1 -3215 3429 2711 4927 183 124 76 chr1 240386628 240387115 -2277238 - L1M4c LINE L1 -4070 2576 2114 836 81 18 0 chr1 240387115 240387226 -2277127 - AluSg/x SINE Alu -9 301 189 1592 123 0 18 chr1 240387226 240387453 -2276900 - AluSq SINE Alu -88 225 3 4927 183 124 76 chr1 240387453 240388572 -2275781 - L1M4c LINE L1 -4532 2114 681 189 0 0 0 chr1 240388572 240388593 -2275760 + (CA)n Simple_repeat Simple_repeat 2 22 0 4927 183 124 76 chr1 240388593 240389301 -2275052 - L1M4c LINE L1 -5965 681 8 3224 195 144 24 chr1 240389309 240390691 -2273662 + L1MB7 LINE L1 4642 6174 -10 2302 77 0 13 chr1 240391271 240391584 -2272769 - AluY SINE Alu -2 309 1 1971 108 13 32 chr1 240391856 240392172 -2272181 - AluSx SINE Alu -2 310 1 690 246 119 51 chr1 240392189 240392542 -2271811 - L1MC/D LINE L1 -2175 5633 5257 181 95 24 24 chr1 240392606 240392648 -2271705 + (TA)n Simple_repeat Simple_repeat 1 42 0 311 271 55 39 chr1 240392746 240392927 -2271426 - L1MC/D LINE L1 -1299 4847 4664 4005 171 23 25 chr1 240393098 240393831 -2270522 + Tigger7 DNA MER2_type 1 732 -1755 2158 110 62 17 chr1 240393834 240394188 -2270165 + Tigger7 DNA MER2_type 2118 2487 0 1149 120 0 0 chr1 240394274 240394441 -2269912 + AluSg/x SINE Alu 141 307 -5 270 313 166 61 chr1 240394517 240394830 -2269523 + L2 LINE L2 2891 3236 -36 23 33 0 0 chr1 240394961 240394991 -2269362 + AT_rich Low_complexity Low_complexity 1 30 0 232 261 87 14 chr1 240396891 240396960 -2267393 + L3 LINE CR1 674 747 -830 23 0 0 0 chr1 240397176 240397199 -2267154 + AT_rich Low_complexity Low_complexity 1 23 0 2230 61 20 3 chr1 240397633 240397928 -2266425 + AluSg SINE Alu 1 300 -10 501 256 221 0 chr1 240398196 240398368 -2265985 - MER46C DNA MER2_type -1 337 128 1121 281 52 14 chr1 240398642 240399053 -2265300 + LTR16A LTR ERVL 4 457 0 348 240 48 40 chr1 240399053 240399178 -2265175 + HERV16 LTR ERVL 1 126 -4870 2183 281 78 23 chr1 240399269 240400017 -2264336 + HERV16 LTR ERVL 376 1164 -3832 483 255 103 26 chr1 240400788 240401098 -2263255 + L1ME LINE L1 540 873 -5197 258 303 68 15 chr1 240401129 240401261 -2263092 - ERVL LTR ERVL -702 5062 4924 521 308 158 18 chr1 240401452 240401731 -2262622 + LTR16A LTR ERVL 133 450 0 1979 122 0 13 chr1 240402997 240403300 -2261053 - AluJb SINE Alu -11 301 3 584 289 58 21 chr1 240403732 240403974 -2260379 - MIR SINE MIR 0 262 12 1880 127 23 16 chr1 240405347 240405825 -2258528 - AluSq SINE Alu 0 480 1 236 308 28 47 chr1 240405871 240405978 -2258375 + L3 LINE CR1 1211 1315 -262 1588 175 10 10 chr1 240406013 240406304 -2258049 + AluJo SINE Alu 1 291 -21 999 119 33 91 chr1 240406316 240406526 -2257827 + L1MC1 LINE L1 6136 6333 0 1044 169 0 0 chr1 240407297 240407463 -2256890 + AluJo SINE Alu 1 166 -146 650 307 124 9 chr1 240409166 240409391 -2254962 + MIR SINE MIR 6 256 -6 1368 183 0 11 chr1 240410064 240410337 -2254016 - AluJo SINE Alu -17 295 26 211 373 127 0 chr1 240410445 240410579 -2253774 - L2 LINE L2 -1 3271 3121 327 258 39 70 chr1 240410981 240411109 -2253244 - MIR SINE MIR -62 146 23 197 301 120 38 chr1 240412813 240412946 -2251407 + L2 LINE L2 3169 3312 -1 4358 159 15 1 chr1 240413898 240414629 -2249724 + L1PB3 LINE L1 5410 6150 -4 21 0 0 0 chr1 240414629 240414650 -2249703 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 0 0 chr1 240414815 240414855 -2249498 + (CA)n Simple_repeat Simple_repeat 1 40 0 2458 31 0 0 chr1 240414913 240415200 -2249153 + L1PA5 LINE L1 5865 6151 -3 2044 107 24 0 chr1 240415303 240415593 -2248760 + AluSx SINE Alu 1 297 -15 2203 104 0 0 chr1 240416804 240417101 -2247252 - AluSx SINE Alu -15 297 1 229 333 8 17 chr1 240417646 240417763 -2246590 - HAL1b LINE L1 -42 1306 1191 1247 153 6 127 chr1 240417971 240418317 -2246036 - AluJo SINE Alu -8 304 1 180 0 0 0 chr1 240418735 240418755 -2245598 + (CTG)n Simple_repeat Simple_repeat 3 22 0 254 305 57 38 chr1 240418802 240418907 -2245446 + MIR SINE MIR 50 156 -106 316 201 141 3 chr1 240419664 240419775 -2244578 + L1ME4a LINE L1 5693 5817 -304 855 143 0 0 chr1 240419789 240419922 -2244431 + AluSq/x SINE Alu 1 133 -180 244 302 13 57 chr1 240420070 240420229 -2244124 + HAL1b LINE L1 1197 1348 0 1194 297 66 14 chr1 240420850 240421423 -2242930 - L2 LINE L2 0 3313 2708 1554 179 13 7 chr1 240421435 240421736 -2242617 - AluJb SINE Alu -9 303 1 2121 102 0 7 chr1 240422104 240422408 -2241945 + AluSc SINE Alu 1 302 -7 21 0 0 0 chr1 240422805 240422826 -2241527 + AT_rich Low_complexity Low_complexity 1 21 0 438 255 29 0 chr1 240423604 240423706 -2240647 + MIR SINE MIR 50 154 -108 290 247 67 40 chr1 240424766 240424916 -2239437 + L1ME4a LINE L1 5964 6117 -4 427 194 222 0 chr1 240425489 240425597 -2238756 + MER58B DNA MER1_type 175 306 -35 1403 166 9 4 chr1 240425597 240425826 -2238527 + MER46A DNA MER2_type 1 230 -6 820 192 36 9 chr1 240425860 240426030 -2238323 + MER97a DNA MER1_type? 564 743 -151 2060 115 3 10 chr1 240426030 240426343 -2238010 + AluSx SINE Alu 1 311 -1 820 192 36 9 chr1 240426343 240426396 -2237957 + MER97a DNA MER1_type? 743 793 -101 313 125 161 0 chr1 240426404 240426460 -2237893 - MLT1B LTR MaLR 0 390 326 1372 13 0 0 chr1 240426969 240427122 -2237231 + L1P2 LINE L1 5623 5775 -380 272 202 8 40 chr1 240427236 240427360 -2236993 + (CATATA)n Simple_repeat Simple_repeat 4 123 0 310 248 131 51 chr1 240427412 240427466 -2236887 - MIR SINE MIR -8 254 206 2384 160 19 21 chr1 240427466 240427821 -2236532 + MSTB LTR MaLR 1 356 -70 2200 97 3 3 chr1 240427821 240428130 -2236223 - AluSg SINE Alu 0 310 2 2384 160 19 21 chr1 240428130 240428200 -2236153 + MSTB LTR MaLR 356 425 -1 310 248 131 51 chr1 240428200 240428282 -2236071 - MIR SINE MIR -56 206 107 262 244 198 0 chr1 240428556 240428642 -2235711 - MIR SINE MIR -86 176 74 180 246 62 46 chr1 240429301 240429366 -2234987 - L2 LINE L2 -2496 818 753 2501 29 19 13 chr1 240429379 240429692 -2234661 - L1PA4 LINE L1 -1 6154 5840 303 240 200 0 chr1 240430730 240430830 -2233523 - MER103 DNA DNA -9 157 38 227 345 67 29 chr1 240430883 240431092 -2233261 - L2 LINE L2 -535 2779 2563 459 286 78 80 chr1 240432866 240433376 -2230977 - MLT1J LTR MaLR -1 510 2 2097 76 3 21 chr1 240433429 240433745 -2230608 + AluSp SINE Alu 1 311 0 288 222 127 0 chr1 240433745 240433808 -2230545 + FLAM_A SINE Alu 1 71 -61 391 243 0 0 chr1 240435025 240435099 -2229254 - MIR SINE MIR -188 74 1 560 173 8 55 chr1 240436268 240436395 -2227958 + AluJ SINE Alu 2 122 -190 825 171 13 7 chr1 240436438 240436623 -2227730 + AluJ SINE Alu 129 314 0 204 121 17 121 chr1 240437212 240437270 -2227083 + polypyrimidine Low_complexity Low_complexity 1 52 0 2073 123 10 0 chr1 240437271 240437580 -2226773 - AluSx SINE Alu 0 312 1 1168 232 0 0 chr1 240437779 240438003 -2226350 + MER58A DNA MER1_type 1 224 0 446 353 46 6 chr1 240438022 240438195 -2226158 + MIR3 SINE MIR 19 198 -10 287 324 27 61 chr1 240438716 240438864 -2225489 + MIR SINE MIR 44 186 -76 230 275 47 101 chr1 240439279 240439428 -2224925 + L2 LINE L2 3171 3311 -2 704 262 29 2 chr1 240440444 240440623 -2223730 + MIR SINE MIR 31 211 -51 446 286 87 31 chr1 240440706 240440867 -2223486 + MIR SINE MIR 42 211 -51 2006 114 3 0 chr1 240441721 240442037 -2222316 + AluY SINE Alu 1 317 0 2109 103 0 3 chr1 240442173 240442463 -2221890 - AluSx SINE Alu -19 293 5 308 284 54 98 chr1 240442961 240443165 -2221188 + L1ME LINE L1 5475 5669 -452 25 51 0 0 chr1 240443198 240443237 -2221116 + AT_rich Low_complexity Low_complexity 1 39 0 1112 166 21 0 chr1 240443290 240443483 -2220870 + L1MC1 LINE L1 6018 6214 -119 216 0 0 0 chr1 240443708 240443732 -2220621 + (TG)n Simple_repeat Simple_repeat 2 25 0 328 276 147 0 chr1 240443744 240443860 -2220493 - L1MCa LINE L1 -4299 2127 1995 23 0 0 0 chr1 240446429 240446452 -2217901 + AT_rich Low_complexity Low_complexity 1 23 0 343 252 58 114 chr1 240446645 240446894 -2217459 - HAL1 LINE L1 -1452 3302 875 2592 130 33 26 chr1 240446988 240447412 -2216941 + MSTA LTR MaLR 2 428 0 257 139 0 0 chr1 240448534 240448577 -2215776 + MER63A DNA MER1_type 1 43 -167 221 91 0 0 chr1 240448692 240448725 -2215628 + (G)n Simple_repeat Simple_repeat 1 33 0 658 233 40 13 chr1 240448736 240448886 -2215467 + MER63A DNA MER1_type 57 210 0 248 203 43 0 chr1 240448942 240449011 -2215342 - MLT1L LTR MaLR -8 607 536 794 257 6 11 chr1 240449288 240449467 -2214886 - MER45A DNA AcHobo 0 178 1 763 197 95 79 chr1 240449524 240449804 -2214549 + MLT1F1 LTR MaLR 281 561 -6 802 239 158 29 chr1 240449813 240450123 -2214230 + Charlie7 DNA MER1_type 276 625 -1987 274 206 93 21 chr1 240450144 240450241 -2214112 + Charlie7 DNA MER1_type 2508 2611 -1 950 238 78 131 chr1 240450555 240451669 -2212684 - L1ME3A LINE L1 -1 6169 5121 858 241 62 68 chr1 240451784 240452312 -2212041 - L1ME3A LINE L1 -1239 4907 4383 360 0 0 0 chr1 240452863 240452903 -2211450 + (TG)n Simple_repeat Simple_repeat 2 41 0 712 300 74 36 chr1 240452903 240453377 -2210976 + L2 LINE L2 2813 3304 -9 249 308 145 33 chr1 240453414 240453628 -2210725 + L2 LINE L2 3025 3262 -10 2249 88 0 0 chr1 240453724 240454019 -2210334 - AluY SINE Alu -16 295 1 24 0 0 0 chr1 240454415 240454439 -2209914 + AT_rich Low_complexity Low_complexity 1 24 0 205 275 55 55 chr1 240455086 240455177 -2209176 - MIR3 SINE MIR -23 185 95 214 309 62 0 chr1 240455823 240455904 -2208449 + MER5A DNA MER1_type 14 99 -90 2325 87 0 0 chr1 240457460 240457772 -2206581 + AluSx SINE Alu 1 312 0 531 138 0 0 chr1 240460243 240460323 -2204030 + MADE1 DNA Mariner 1 80 0 367 313 45 57 chr1 240460803 240460979 -2203374 + MIR SINE MIR 63 236 -26 2330 96 0 0 chr1 240461308 240461610 -2202743 + AluSg SINE Alu 1 302 -8 210 231 0 0 chr1 240463284 240463336 -2201017 - L2 LINE L2 0 3313 3262 463 84 56 0 chr1 240463596 240463667 -2200686 - MER41A LTR ERV1 -89 465 391 397 367 57 38 chr1 240463720 240463930 -2200423 + MIR SINE MIR 26 239 -23 196 297 110 28 chr1 240463962 240464107 -2200246 - L2 LINE L2 -298 2974 2818 207 272 184 26 chr1 240464502 240464616 -2199737 + MIR SINE MIR 110 241 -21 639 297 78 9 chr1 240465100 240465319 -2199034 - MIR SINE MIR -1 261 28 859 145 8 0 chr1 240465517 240465648 -2198705 + FLAM_C SINE Alu 1 132 -1 246 367 0 11 chr1 240465828 240465918 -2198435 + L3 LINE CR1 1485 1573 -4 489 56 42 0 chr1 240465939 240466011 -2198342 - L1PA5 LINE L1 -17 6137 6063 2188 106 3 0 chr1 240466216 240466527 -2197826 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 240466903 240466924 -2197429 + AT_rich Low_complexity Low_complexity 1 21 0 2151 119 0 3 chr1 240466972 240467282 -2197071 - AluSx SINE Alu -3 309 1 205 214 18 0 chr1 240467324 240467380 -2196973 + T-rich Low_complexity Low_complexity 4 60 0 403 192 55 0 chr1 240467594 240467667 -2196686 - MER21B LTR ERV1 -767 96 20 1859 149 0 7 chr1 240468063 240468351 -2196002 - AluSx SINE Alu -26 286 1 308 103 88 29 chr1 240469025 240469093 -2195260 - L1MB8 LINE L1 0 6178 6107 2130 83 10 0 chr1 240469202 240469492 -2194861 - AluSq SINE Alu -20 293 1 2289 57 17 10 chr1 240469504 240469805 -2194548 - AluY SINE Alu -8 303 1 275 337 43 6 chr1 240469807 240469970 -2194383 - L1ME LINE L1 -295 5826 5658 1631 145 48 3 chr1 240470201 240470491 -2193862 - AluJb SINE Alu -9 303 1 2213 53 4 4 chr1 240471294 240471618 -2192735 - AluY SINE Alu 0 324 1 1362 152 112 25 chr1 240471618 240471894 -2192459 - AluJo SINE Alu -10 302 3 776 109 0 0 chr1 240472089 240472190 -2192163 + AluS SINE Alu 2 102 -210 1602 76 0 5 chr1 240472290 240472501 -2191852 - AluSq SINE Alu -103 210 1 21 89 0 0 chr1 240472536 240472592 -2191761 + AT_rich Low_complexity Low_complexity 1 56 0 378 271 96 115 chr1 240473730 240474114 -2190239 + HAL1 LINE L1 475 851 -1656 244 123 105 0 chr1 240474120 240474177 -2190176 - MLT2B1 LTR ERVL -10 510 448 295 108 116 0 chr1 240474177 240474306 -2190047 + (TA)n Simple_repeat Simple_repeat 2 145 0 2786 199 2 2 chr1 240474306 240474783 -2189570 - MLT2B1 LTR ERVL -41 479 3 1723 172 0 7 chr1 240474783 240475085 -2189268 + AluJb SINE Alu 1 300 -12 10205 136 74 28 chr1 240475090 240475452 -2188901 - ERVL-B1 LTR ERVL 0 5764 5420 2137 107 0 0 chr1 240475452 240475743 -2188610 + AluSx SINE Alu 1 291 -21 10205 136 74 28 chr1 240475743 240476996 -2187357 - ERVL-B1 LTR ERVL -344 5420 4061 1497 173 58 4 chr1 240476996 240477117 -2187236 + AluJo SINE Alu 1 114 -198 198 0 0 0 chr1 240477117 240477139 -2187214 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1497 173 58 4 chr1 240477139 240477294 -2187059 + AluJo SINE Alu 114 292 -20 10205 136 74 28 chr1 240477294 240477410 -2186943 - ERVL-B1 LTR ERVL -1703 4061 3952 2079 110 14 0 chr1 240477434 240477726 -2186627 + AluSx SINE Alu 1 296 -16 823 137 0 0 chr1 240477733 240477850 -2186503 - FLAM_C SINE Alu -26 117 1 3702 158 51 14 chr1 240477851 240478514 -2185839 - ERVL-B1 LTR ERVL -1796 3968 3281 192 125 0 0 chr1 240478524 240478556 -2185797 + (T)n Simple_repeat Simple_repeat 1 32 0 194 296 0 14 chr1 240480102 240480173 -2184180 + MIR SINE MIR 65 134 -74 2021 132 88 9 chr1 240480411 240480752 -2183601 - ERVL LTR ERVL -2468 3296 2929 763 200 0 46 chr1 240481067 240481242 -2183111 - L1P LINE L1 -1156 4990 4824 857 193 82 34 chr1 240481409 240481476 -2182877 + AluJo SINE Alu 74 136 -176 2129 95 3 0 chr1 240481476 240481789 -2182564 + AluSp SINE Alu 1 314 0 857 193 82 34 chr1 240481789 240481927 -2182426 + AluJo SINE Alu 136 290 -22 458 297 36 16 chr1 240482560 240482752 -2181601 + L1ME4a LINE L1 5678 5873 -248 191 368 63 11 chr1 240483245 240483340 -2181013 - L2 LINE L2 -61 3211 3112 281 389 76 6 chr1 240483558 240483874 -2180479 - L2 LINE L2 -1045 2269 1932 760 148 0 8 chr1 240483950 240484072 -2180281 + FLAM_A SINE Alu 1 121 -12 1394 155 68 30 chr1 240484293 240484589 -2179764 - AluJo SINE Alu 0 312 6 186 294 101 64 chr1 240484592 240484701 -2179652 + L2 LINE L2 3189 3301 -12 1364 113 38 0 chr1 240485663 240485875 -2178478 + AluSg/x SINE Alu 91 310 -2 1030 161 6 6 chr1 240486217 240486385 -2177968 + L1MA9 LINE L1 5823 5990 -322 494 353 68 14 chr1 240486416 240486694 -2177659 - L3 LINE CR1 -33 1544 1252 647 273 18 100 chr1 240487155 240487485 -2176868 - L2 LINE L2 0 3313 3011 24 0 0 0 chr1 240488923 240488947 -2175406 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr1 240490361 240490389 -2173964 + AT_rich Low_complexity Low_complexity 1 28 0 249 233 58 50 chr1 240492700 240492820 -2171533 - L2 LINE L2 -82 3231 3111 828 187 49 1 chr1 240492847 240493030 -2171323 + L1MA9 LINE L1 5600 5786 -397 356 200 11 0 chr1 240493144 240493234 -2171119 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 2669 176 43 12 chr1 240493252 240493617 -2170736 + L1MA9 LINE L1 5782 6169 -143 294 29 0 0 chr1 240493617 240493652 -2170701 + (CA)n Simple_repeat Simple_repeat 2 36 0 2669 176 43 12 chr1 240493652 240493796 -2170557 + L1MA9 LINE L1 6169 6307 -5 419 306 96 60 chr1 240493900 240494233 -2170120 - L2 LINE L2 -357 2957 2613 298 273 124 8 chr1 240494266 240494387 -2169966 - MIR SINE MIR -7 255 121 1419 184 0 4 chr1 240494529 240494763 -2169590 + AluJo SINE Alu 1 233 -79 2288 93 0 10 chr1 240494931 240495231 -2169122 + AluSc SINE Alu 1 297 -12 1056 175 32 124 chr1 240496468 240496816 -2167537 + AluYb8 SINE Alu 2 320 0 1717 303 98 34 chr1 240497498 240498585 -2165768 + L2 LINE L2 2042 3189 -124 204 294 120 0 chr1 240501008 240501100 -2163253 - L2 LINE L2 -463 2851 2749 4203 87 7 0 chr1 240501145 240501695 -2162658 + MER41A LTR ERV1 1 554 0 189 387 32 26 chr1 240503726 240503881 -2160472 + MIR SINE MIR 27 182 -80 225 254 18 0 chr1 240504564 240504619 -2159734 + GA-rich Low_complexity Low_complexity 1 56 0 2237 116 0 0 chr1 240504711 240505021 -2159332 + AluSx SINE Alu 1 310 -2 4035 143 14 2 chr1 240505346 240505973 -2158380 + MER41B LTR ERV1 1 635 0 2019 167 129 2 chr1 240506193 240506619 -2157734 + L1MB4 LINE L1 5701 6180 0 673 174 32 5 chr1 240506623 240506831 -2157522 + GA-rich Low_complexity Low_complexity 1 202 -201 1103 69 29 6 chr1 240506831 240507005 -2157348 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 673 174 32 5 chr1 240507005 240507016 -2157337 + GA-rich Low_complexity Low_complexity 202 403 0 183 156 0 0 chr1 240508182 240508214 -2156139 + (CTG)n Simple_repeat Simple_repeat 1 32 0 38 39 0 0 chr1 240509431 240509483 -2154870 + AT_rich Low_complexity Low_complexity 1 52 0 27 0 0 0 chr1 240509843 240509870 -2154483 + AT_rich Low_complexity Low_complexity 1 27 0 228 290 0 16 chr1 240510955 240511017 -2153336 + L2 LINE L2 3203 3263 -50 1389 178 23 8 chr1 240511034 240511292 -2153061 + MLT2B3 LTR ERVL 259 520 -34 29 0 0 0 chr1 240511608 240511637 -2152716 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 240511735 240511756 -2152597 + AT_rich Low_complexity Low_complexity 1 21 0 257 321 76 30 chr1 240513140 240513271 -2151082 + MIR SINE MIR 17 153 -55 298 198 134 139 chr1 240513630 240513739 -2150614 + MIR SINE MIR 18 127 -135 1905 173 0 3 chr1 240513739 240514051 -2150302 + AluJo SINE Alu 1 311 -1 298 198 134 139 chr1 240514051 240514143 -2150210 + MIR SINE MIR 127 218 -44 373 88 70 0 chr1 240514314 240514371 -2149982 - L1PA16 LINE L1 -9 6157 6097 1849 169 7 7 chr1 240514374 240514718 -2149635 - AluJb SINE Alu 0 312 1 732 287 0 10 chr1 240515877 240516079 -2148274 - MIR SINE MIR -5 257 58 23 68 0 0 chr1 240516291 240516335 -2148018 + AT_rich Low_complexity Low_complexity 1 44 0 1766 164 33 10 chr1 240516780 240517084 -2147269 + AluJo SINE Alu 1 311 -1 1022 229 86 66 chr1 240518968 240519216 -2145137 - MLT1G3 LTR MaLR 0 590 348 1885 226 65 31 chr1 240519216 240519756 -2144597 + MER74A LTR ERVL 1 558 0 1022 229 86 66 chr1 240519756 240520057 -2144296 - MLT1G3 LTR MaLR -242 348 1 23 33 0 0 chr1 240520576 240520606 -2143747 + AT_rich Low_complexity Low_complexity 1 30 0 2170 131 0 10 chr1 240521535 240521849 -2142504 - AluSx SINE Alu -1 311 1 2188 128 7 3 chr1 240522416 240522722 -2141631 - AluSx SINE Alu -5 307 1 216 97 0 0 chr1 240522846 240522877 -2141476 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 872 116 18 6 chr1 240522891 240523055 -2141298 + (TGGA)n Simple_repeat Simple_repeat 3 168 0 293 306 10 10 chr1 240523575 240523673 -2140680 + MIR3 SINE MIR 107 204 -4 222 156 0 0 chr1 240523877 240523922 -2140431 + GA-rich Low_complexity Low_complexity 2 46 0 237 132 0 0 chr1 240526405 240526443 -2137910 + (CA)n Simple_repeat Simple_repeat 1 38 0 496 142 134 37 chr1 240526714 240526848 -2137505 + L1ME3A LINE L1 5895 6041 -129 1638 153 27 37 chr1 240527058 240527352 -2137001 + AluJo SINE Alu 1 291 -21 650 295 6 0 chr1 240528839 240529009 -2135344 + MLT1F LTR MaLR 1 180 -380 780 154 0 0 chr1 240530051 240530174 -2134179 - MLT1D LTR MaLR -3 502 380 1443 149 0 21 chr1 240530176 240530411 -2133942 + AluJo SINE Alu 67 296 -16 1593 184 30 74 chr1 240530432 240530835 -2133518 - MLT1D LTR MaLR -120 385 1 5890 130 18 44 chr1 240530928 240531172 -2133181 + L1MA8 LINE L1 4362 4611 -1680 2431 177 34 2 chr1 240531172 240531584 -2132769 + MSTB LTR MaLR 2 426 0 5890 130 18 44 chr1 240531584 240533316 -2131037 + L1MA8 LINE L1 4611 6290 -1 30 27 0 0 chr1 240533639 240533676 -2130677 + AT_rich Low_complexity Low_complexity 1 37 0 1338 70 94 0 chr1 240536467 240536638 -2127715 - AluSq SINE Alu -126 187 1 2393 94 0 0 chr1 240536992 240537291 -2127062 + AluSq SINE Alu 1 299 -14 210 351 74 0 chr1 240537453 240537601 -2126752 + MIR3 SINE MIR 46 204 -4 186 209 0 0 chr1 240537626 240537669 -2126684 + (TG)n Simple_repeat Simple_repeat 2 44 0 264 301 11 11 chr1 240537750 240537843 -2126510 - MIR SINE MIR -3 259 167 288 275 12 12 chr1 240538747 240538827 -2125526 + MIR3 SINE MIR 88 167 -41 1750 143 0 41 chr1 240538851 240539144 -2125209 - AluJo SINE Alu -31 281 1 192 158 0 0 chr1 240540436 240540474 -2123879 + (CA)n Simple_repeat Simple_repeat 2 39 0 413 267 82 22 chr1 240540536 240540739 -2123614 - MIR SINE MIR -4 258 39 280 227 27 27 chr1 240541034 240541109 -2123244 + MER5B DNA MER1_type 1 75 -103 1300 224 22 42 chr1 240541113 240541470 -2122883 + MLT1A1 LTR MaLR 15 364 -1 2288 104 3 0 chr1 240541515 240541814 -2122539 - AluSc SINE Alu -9 300 1 2085 242 46 31 chr1 240541837 240542168 -2122185 - L1MC4 LINE L1 0 8042 7717 1808 172 0 10 chr1 240542168 240542470 -2121883 - AluJo SINE Alu -13 299 1 2085 242 46 31 chr1 240542470 240542803 -2121550 - L1MC4 LINE L1 -325 7717 7282 196 184 0 0 chr1 240542875 240542913 -2121440 + MER5B DNA MER1_type 141 178 0 397 208 179 19 chr1 240543049 240543155 -2121198 - L2 LINE L2 -3 3269 3147 241 218 310 0 chr1 240543224 240543311 -2121042 - MIR SINE MIR 0 262 149 502 307 57 5 chr1 240543465 240543787 -2120566 + L1MB7 LINE L1 5437 5789 -391 1554 158 93 22 chr1 240543931 240544209 -2120144 + AluJb SINE Alu 1 298 -14 956 192 36 10 chr1 240544624 240544817 -2119536 - AluJo SINE Alu -114 198 1 2200 111 0 37 chr1 240545518 240545842 -2118511 - AluSx SINE Alu 0 312 1 275 286 34 54 chr1 240545845 240545992 -2118361 - L2 LINE L2 -532 2782 2639 343 123 0 0 chr1 240546949 240547006 -2117347 + L1MB7 LINE L1 5773 5829 -355 2695 130 36 7 chr1 240547006 240547445 -2116908 - Tigger2 DNA MER2_type 0 2718 2267 276 269 0 0 chr1 240547431 240547498 -2116855 - Tigger2 DNA MER2_type -2651 67 1 * 1583 197 14 39 chr1 240547499 240547805 -2116548 + L1MB7 LINE L1 5829 6126 -58 1844 168 14 0 chr1 240547805 240548096 -2116257 - AluJo SINE Alu -17 295 1 1583 197 14 39 chr1 240548096 240548145 -2116208 + L1MB7 LINE L1 6126 6175 -9 212 242 63 84 chr1 240548145 240548240 -2116113 - MER5B DNA MER1_type -49 129 37 909 111 22 0 chr1 240548242 240548377 -2115976 + L1MA5A LINE L1 6012 6149 -148 806 142 8 0 chr1 240548383 240548503 -2115850 - FLAM_C SINE Alu -22 121 1 910 142 0 26 chr1 240548504 240548659 -2115694 + L1MA5A LINE L1 6135 6285 -12 2494 70 3 0 chr1 240548659 240548958 -2115395 - AluSp SINE Alu -13 300 1 323 98 20 0 chr1 240549001 240549052 -2115301 - MER5B DNA MER1_type -124 54 3 277 237 122 65 chr1 240549055 240549194 -2115159 - MIR3 SINE MIR -49 159 13 1826 151 20 3 chr1 240549994 240550299 -2114054 - AluJb SINE Alu -2 310 1 306 0 0 0 chr1 240550459 240550493 -2113860 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1804 99 4 24 chr1 240550496 240550748 -2113605 - AluSx SINE Alu -30 282 36 186 353 101 0 chr1 240551144 240551263 -2113090 - MIR SINE MIR -71 191 61 198 118 0 0 chr1 240551371 240551405 -2112948 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1902 159 19 10 chr1 240551512 240551634 -2112719 + AluSx SINE Alu 1 120 -192 258 32 0 0 chr1 240551634 240551665 -2112688 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1902 159 19 10 chr1 240551665 240551824 -2112529 + AluSx SINE Alu 120 288 -24 180 0 0 0 chr1 240551824 240551844 -2112509 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1902 159 19 10 chr1 240551844 240551869 -2112484 + AluSx SINE Alu 288 311 -1 3827 160 42 24 chr1 240552517 240552585 -2111768 - LTR8A LTR ERV1 0 727 662 1600 122 35 0 chr1 240552585 240552814 -2111539 + AluSc SINE Alu 56 292 -17 3827 160 42 24 chr1 240552814 240553459 -2110894 - LTR8A LTR ERV1 -65 662 1 2279 69 4 0 chr1 240553592 240553869 -2110484 + AluSq SINE Alu 1 278 -35 201 39 0 0 chr1 240553876 240553902 -2110451 + (GA)n Simple_repeat Simple_repeat 1 26 0 2607 49 0 0 chr1 240554541 240554847 -2109506 - AluY SINE Alu -5 306 1 2280 93 7 0 chr1 240555066 240555355 -2108998 + AluSx SINE Alu 7 297 -15 382 283 63 19 chr1 240555924 240556083 -2108270 - MIR SINE MIR -69 193 28 2362 98 0 0 chr1 240556134 240556441 -2107912 + AluSx SINE Alu 1 307 -5 183 279 39 85 chr1 240556633 240556762 -2107591 - MIR3 SINE MIR -81 127 5 1016 184 68 168 chr1 240557218 240557730 -2106623 + L1MC4 LINE L1 6469 6929 -1113 4024 146 15 48 chr1 240557746 240558493 -2105860 + MER50 LTR ERV1 1 722 -12 6633 125 17 30 chr1 240558493 240560280 -2104073 + MER50-int LTR ERV1 7 1849 -5356 6124 208 17 21 chr1 240560276 240561451 -2102902 + MER50-int LTR ERV1 2789 3958 -3247 * 2257 98 18 0 chr1 240561481 240561809 -2102544 - L1MA3 LINE L1 0 6305 5972 228 67 0 0 chr1 240562145 240562175 -2102178 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2043 261 38 39 chr1 240562175 240562646 -2101707 + L1MC4 LINE L1 7090 7561 -481 1980 130 20 7 chr1 240562646 240562947 -2101406 + AluJb SINE Alu 1 305 -7 2043 261 38 39 chr1 240562947 240563160 -2101193 + L1MC4 LINE L1 7561 7773 -269 1938 205 44 31 chr1 240563174 240563628 -2100725 - MLT1C LTR MaLR 0 467 8 329 229 14 0 chr1 240563647 240563717 -2100636 + L1MC4 LINE L1 7827 7897 -145 1383 131 45 47 chr1 240563750 240563876 -2100477 - LTR54 LTR ERV1 0 510 385 2892 71 3 6 chr1 240563876 240564241 -2100112 + THE1B LTR MaLR 1 364 0 1383 131 45 47 chr1 240564241 240564562 -2099791 - LTR54 LTR ERV1 -125 385 1 258 185 15 31 chr1 240564562 240564609 -2099744 + L1MC4 LINE L1 7932 7978 -60 2011 138 3 7 chr1 240564609 240564741 -2099612 + AluJb SINE Alu 1 132 -180 450 0 0 0 chr1 240564741 240564791 -2099562 + (TA)n Simple_repeat Simple_repeat 2 51 0 2011 138 3 7 chr1 240564791 240564948 -2099405 + AluJb SINE Alu 132 289 -23 258 185 15 31 chr1 240564948 240564965 -2099388 + L1MC4 LINE L1 7978 8038 0 2332 106 0 0 chr1 240565178 240565470 -2098883 - AluSc SINE Alu -17 292 1 1883 180 3 0 chr1 240566026 240566413 -2097940 - AluJo SINE Alu 0 388 1 237 183 46 170 chr1 240566637 240566790 -2097563 - LTR28 LTR ERV1 -56 964 831 895 254 112 68 chr1 240566797 240567344 -2097009 - LTR1B LTR ERV1 -223 603 33 1102 172 0 0 chr1 240567350 240567519 -2096834 - AluJb SINE Alu -143 169 1 609 134 0 0 chr1 240567840 240567952 -2096401 + (TA)n Simple_repeat Simple_repeat 1 112 0 2355 95 3 16 chr1 240567956 240568273 -2096080 - AluSp SINE Alu 0 313 1 536 267 0 15 chr1 240568776 240568907 -2095446 - HERV16 LTR ERVL -2870 2126 1998 1979 135 3 26 chr1 240569112 240569423 -2094930 - AluJo SINE Alu -8 304 1 1908 215 45 64 chr1 240570134 240570513 -2093840 - MER74B LTR ERVL -3 619 253 1042 155 11 11 chr1 240570513 240570687 -2093666 - FAM SINE Alu -1 174 1 1908 215 45 64 chr1 240570687 240570869 -2093484 - MER74B LTR ERVL -369 253 69 2448 305 63 9 chr1 240570909 240571787 -2092566 - HERV16 LTR ERVL -4054 942 18 823 151 0 0 chr1 240571815 240571941 -2092412 - FLAM_C SINE Alu -17 126 1 1011 218 267 7 chr1 240571967 240572270 -2092083 - LTR16A LTR ERVL -1 449 68 2675 55 0 0 chr1 240572658 240572965 -2091388 + AluY SINE Alu 1 307 -4 568 152 0 0 chr1 240573137 240573229 -2091124 + FLAM_A SINE Alu 42 133 -9 207 100 0 0 chr1 240573719 240573749 -2090604 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 355 151 38 104 chr1 240573975 240574081 -2090272 + MER53 DNA DNA 1 99 -90 387 156 18 110 chr1 240574108 240574217 -2090136 + MER53 DNA DNA 9 107 -82 1397 137 78 78 chr1 240575018 240575155 -2089198 + AluJo SINE Alu 9 145 -167 1875 154 0 23 chr1 240575155 240575461 -2088892 + AluJb SINE Alu 5 303 -9 1397 137 78 78 chr1 240575461 240575607 -2088746 + AluJo SINE Alu 144 292 -20 284 197 76 76 chr1 240575723 240575818 -2088535 + MIR3 SINE MIR 76 173 -35 1482 107 0 52 chr1 240575818 240576051 -2088302 + AluSg/x SINE Alu 84 304 -8 284 197 76 76 chr1 240576051 240576087 -2088266 + MIR3 SINE MIR 172 207 -1 194 0 39 0 chr1 240576144 240576170 -2088183 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2070 120 21 0 chr1 240576173 240576456 -2087897 - AluSx SINE Alu -23 289 1 240 250 0 0 chr1 240576565 240576613 -2087740 + MLT1E LTR MaLR 4 51 -573 1081 182 141 35 chr1 240576789 240576875 -2087478 + MLT1E LTR MaLR 172 247 -346 2298 105 0 0 chr1 240576875 240577170 -2087183 + AluSq SINE Alu 3 297 -16 1081 182 141 35 chr1 240577170 240577434 -2086919 + MLT1E LTR MaLR 247 545 -48 271 277 24 0 chr1 240578304 240578387 -2085966 + MIR SINE MIR 178 262 0 2279 93 0 14 chr1 240578493 240578810 -2085543 - AluSx SINE Alu 0 313 1 1865 137 25 195 chr1 240578819 240579382 -2084971 + MLT1C LTR MaLR 1 467 0 832 156 0 0 chr1 240579691 240579813 -2084540 - FLAM_C SINE Alu -15 128 7 1512 170 82 3 chr1 240579898 240580269 -2084084 - MER57A LTR ERV1 -5 429 1 360 0 0 0 chr1 240580980 240581020 -2083333 + (TG)n Simple_repeat Simple_repeat 2 41 0 645 198 0 8 chr1 240581021 240581142 -2083211 - FLAM_C SINE Alu -17 126 7 194 366 49 29 chr1 240581178 240581383 -2082970 + L2 LINE L2 2440 2648 -666 382 253 191 6 chr1 240581469 240581631 -2082722 - MIR SINE MIR -69 193 2 202 286 205 12 chr1 240581655 240581826 -2082527 + L2 LINE L2 2764 2967 -347 269 311 58 0 chr1 240581907 240582010 -2082343 - MIR SINE MIR -65 197 89 2082 213 80 76 chr1 240582076 240582704 -2081649 - L1ME1 LINE L1 0 6446 5817 2934 273 79 16 chr1 240582707 240583915 -2080438 - L1ME1 LINE L1 -1947 4479 3094 2604 77 0 0 chr1 240583915 240584226 -2080127 - AluY SINE Alu 0 311 1 2934 273 79 16 chr1 240584226 240584880 -2079473 - L1ME1 LINE L1 -3332 3094 2483 4033 231 32 12 chr1 240584883 240585467 -2078886 + MER21B LTR ERV1 1 609 -254 1148 247 54 18 chr1 240585467 240585799 -2078554 - MER2 DNA MER2_type 0 344 1 4033 231 32 12 chr1 240585799 240586049 -2078304 + MER21B LTR ERV1 609 852 -11 527 272 30 34 chr1 240586063 240586331 -2078022 - L1ME1 LINE L1 -4087 2520 2254 358 216 9 18 chr1 240586336 240586447 -2077906 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 1182 285 43 24 chr1 240586450 240586844 -2077509 - L1ME1 LINE L1 -4358 2249 1864 837 40 0 0 chr1 240586844 240586943 -2077410 - L1PA3 LINE L1 0 6155 6057 1182 285 43 24 chr1 240586943 240587210 -2077143 - L1ME1 LINE L1 -4743 1864 1398 1718 157 0 8 chr1 240587281 240587542 -2076811 + AluJo SINE Alu 1 259 -53 845 143 21 13 chr1 240587559 240587783 -2076570 + GA-rich Low_complexity Low_complexity 1 225 0 2270 94 30 3 chr1 240588045 240588342 -2076011 - AluSx SINE Alu -7 305 1 407 305 14 7 chr1 240588405 240588565 -2075788 - MIR SINE MIR -66 142 25 284 225 0 38 chr1 240588586 240588666 -2075687 + MER113 DNA MER1_type? 46 122 -399 2015 132 20 7 chr1 240589571 240589866 -2074487 + AluSx SINE Alu 1 299 -13 538 237 15 22 chr1 240589867 240590002 -2074351 - MLT1F LTR MaLR -408 134 1 701 283 175 42 chr1 240590014 240590523 -2073830 - L2 LINE L2 -18 3295 2653 2396 86 0 3 chr1 240590523 240590825 -2073528 - AluSc SINE Alu -8 301 1 701 283 175 42 chr1 240590825 240591014 -2073339 - L2 LINE L2 -660 2653 2491 189 250 29 48 chr1 240591041 240591145 -2073208 - L2 LINE L2 -4 3309 3208 1653 174 17 7 chr1 240591157 240591444 -2072909 + AluJo SINE Alu 5 294 -18 548 267 53 49 chr1 240591510 240591864 -2072489 - L2 LINE L2 -212 3060 2710 1010 92 7 0 chr1 240591864 240592005 -2072348 + L1PB1 LINE L1 6009 6150 -1 548 267 53 49 chr1 240592005 240592076 -2072277 - L2 LINE L2 -562 2710 2641 2023 148 0 3 chr1 240592129 240592427 -2071926 - AluJb SINE Alu -15 297 1 650 183 57 74 chr1 240592437 240592612 -2071741 + MER5B DNA MER1_type 7 178 0 2206 97 31 0 chr1 240592826 240593116 -2071237 - AluSx SINE Alu -13 299 1 277 240 137 41 chr1 240593504 240593650 -2070703 + MIR SINE MIR 103 262 0 1933 106 80 7 chr1 240593805 240593927 -2070426 + AluSx SINE Alu 1 113 -199 333 0 0 0 chr1 240593927 240593964 -2070389 + (CA)n Simple_repeat Simple_repeat 2 38 0 1933 106 80 7 chr1 240593964 240594116 -2070237 + AluSx SINE Alu 113 295 -17 2189 89 21 0 chr1 240594947 240595238 -2069115 + AluSx SINE Alu 1 297 -15 265 269 9 78 chr1 240595424 240595540 -2068813 + MIR SINE MIR 16 121 -92 850 74 0 0 chr1 240595844 240595952 -2068401 - AluSp/q SINE Alu -4 309 202 896 119 6 17 chr1 240596638 240596814 -2067539 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 192 125 0 0 chr1 240596828 240596860 -2067493 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 277 111 44 0 chr1 240596860 240596905 -2067448 + GA-rich Low_complexity Low_complexity 5 51 0 646 215 0 0 chr1 240596908 240597015 -2067338 - FLAM_C SINE Alu -35 108 2 2512 267 86 42 chr1 240597016 240598206 -2066147 - L1ME LINE L1 -4790 1290 36 207 100 0 0 chr1 240598355 240598385 -2065968 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 4942 50 8 0 chr1 240598446 240599050 -2065303 + L1PA6 LINE L1 5332 5940 -214 2433 140 6 127 chr1 240599348 240599733 -2064620 + MER44D DNA MER2_type 9 357 -2130 1665 171 7 7 chr1 240599733 240600025 -2064328 - AluJb SINE Alu -20 292 1 2433 140 6 127 chr1 240600025 240600245 -2064108 + MER44D DNA MER2_type 357 602 -3 443 255 49 74 chr1 240601069 240601312 -2063041 + MER102a DNA MER1_type 94 330 0 2166 137 0 0 chr1 240601443 240601736 -2062617 + AluSx SINE Alu 1 293 -19 3834 112 14 7 chr1 240602098 240602668 -2061685 - L1PB1 LINE L1 -1 6150 5577 1377 203 84 0 chr1 240603270 240603556 -2060797 - AluJo SINE Alu -2 310 1 190 316 0 11 chr1 240604316 240604411 -2059942 - MIR SINE MIR -138 124 31 315 241 146 51 chr1 240604623 240604760 -2059593 + MIR SINE MIR 40 189 -73 189 74 0 0 chr1 240604826 240604853 -2059500 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2263 116 0 3 chr1 240604908 240605218 -2059135 + AluSx SINE Alu 1 309 -3 256 284 49 10 chr1 240605999 240606101 -2058252 - MIR SINE MIR -72 136 31 355 308 50 13 chr1 240606120 240606279 -2058074 + MIR SINE MIR 24 188 -74 1966 162 0 3 chr1 240606292 240606601 -2057752 + AluJo SINE Alu 5 312 0 2071 111 35 0 chr1 240607406 240607695 -2056658 + AluSx SINE Alu 1 299 -13 812 237 132 27 chr1 240607701 240607996 -2056357 - MLT1J LTR MaLR -55 456 131 401 172 147 43 chr1 240608396 240608512 -2055841 - MLT1J LTR MaLR -383 128 1 1630 153 53 14 chr1 240608539 240608820 -2055533 + AluJb SINE Alu 11 302 -10 379 290 75 27 chr1 240609201 240609387 -2054966 - MIR SINE MIR -19 243 49 1294 169 5 0 chr1 240609387 240609615 -2054738 + AluJo SINE Alu 81 309 0 252 286 0 0 chr1 240610116 240610165 -2054188 + FRAM/FAM SINE Alu 1 48 -118 469 215 21 0 chr1 240610167 240610290 -2054063 + FLAM_A SINE Alu 21 145 0 423 0 0 0 chr1 240610320 240610367 -2053986 + (CA)n Simple_repeat Simple_repeat 2 48 0 317 226 274 0 chr1 240610367 240610491 -2053862 - MLT1L LTR MaLR -435 180 23 871 209 154 67 chr1 240611271 240611811 -2052542 + L1MC4 LINE L1 7455 8041 -1 2575 60 0 0 chr1 240612308 240612610 -2051743 - AluY SINE Alu -9 302 1 686 147 0 17 chr1 240612616 240612732 -2051621 - FLAM_A SINE Alu -19 123 10 1058 270 29 47 chr1 240612931 240613315 -2051038 - LTR16A LTR ERVL -2 455 55 809 243 44 5 chr1 240613376 240613582 -2050771 - L1MC4 LINE L1 -362 7680 7467 625 307 94 45 chr1 240613850 240614185 -2050168 - HERV16 LTR ERVL -4474 522 160 2515 57 3 3 chr1 240614185 240614486 -2049867 - AluSq SINE Alu -12 301 1 625 307 94 45 chr1 240614486 240614577 -2049776 - HERV16 LTR ERVL -4836 160 75 3032 74 0 21 chr1 240614584 240615002 -2049351 + LTR7 LTR ERV1 40 448 -2 209 351 72 9 chr1 240615120 240615231 -2049122 + MIR SINE MIR 31 148 -114 2208 88 27 0 chr1 240615636 240615932 -2048421 + AluY SINE Alu 1 304 -7 24 0 0 0 chr1 240616072 240616096 -2048257 + AT_rich Low_complexity Low_complexity 1 24 0 794 154 0 0 chr1 240617130 240617247 -2047106 + FLAM_C SINE Alu 1 117 -16 180 0 0 0 chr1 240617260 240617280 -2047073 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2001 128 10 26 chr1 240618222 240618528 -2045825 - AluSx SINE Alu -11 301 1 278 295 39 16 chr1 240618829 240618958 -2045395 + L2 LINE L2 3178 3309 -4 2301 238 102 15 chr1 240619182 240619239 -2045114 - L1M4 LINE L1 -1442 4704 4653 2283 86 3 0 chr1 240619239 240619252 -2045101 - AluSc SINE Alu -18 291 280 225 0 0 0 chr1 240619252 240619277 -2045076 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2283 86 3 0 chr1 240619277 240619553 -2044800 - AluSc SINE Alu -29 280 1 2301 238 102 15 chr1 240619553 240620221 -2044132 - L1M4 LINE L1 -1493 4653 3916 601 271 48 55 chr1 240620663 240620775 -2043578 - L2 LINE L2 0 3313 3202 1965 158 3 10 chr1 240620775 240621085 -2043268 - AluJb SINE Alu 0 312 5 601 271 48 55 chr1 240621085 240621245 -2043108 - L2 LINE L2 -111 3202 3043 310 247 0 24 chr1 240621293 240621378 -2042975 + AluSg SINE Alu 2 84 -216 449 212 221 0 chr1 240621742 240621855 -2042498 + L2 LINE L2 3175 3312 -1 2118 96 14 10 chr1 240622572 240622865 -2041488 - AluSc SINE Alu -15 294 1 331 266 198 23 chr1 240623246 240623423 -2040930 + MIR SINE MIR 12 219 -43 1053 147 13 0 chr1 240625073 240625230 -2039123 - AluJb SINE Alu -13 299 141 190 286 29 67 chr1 240625461 240625566 -2038787 - MIR SINE MIR -100 162 62 278 260 27 0 chr1 240627307 240627380 -2036973 + MER20B DNA MER1_type 43 117 -666 2191 107 37 0 chr1 240628019 240628318 -2036035 - AluSg SINE Alu 0 310 1 898 254 4 13 chr1 240628484 240628716 -2035637 - MER96B DNA MER1_type? -187 230 1 1700 203 88 34 chr1 240630662 240631139 -2033214 - MLT1D LTR MaLR 0 505 3 2214 122 0 3 chr1 240631351 240631662 -2032691 + AluSx SINE Alu 1 310 -2 212 333 56 68 chr1 240631703 240631937 -2032416 + L3 LINE CR1 801 1031 -546 337 265 10 20 chr1 240632198 240632296 -2032057 + L3 LINE CR1 1078 1174 -403 195 349 32 40 chr1 240632401 240632527 -2031826 - MIR SINE MIR -65 143 19 412 317 77 6 chr1 240632539 240632722 -2031631 + L3 LINE CR1 1187 1382 -195 2204 115 6 10 chr1 240634380 240634693 -2029660 + AluSx SINE Alu 1 312 0 332 363 47 19 chr1 240635098 240635310 -2029043 - L3b LINE CR1 -102 1481 1264 271 339 25 0 chr1 240635567 240635685 -2028668 + MIR SINE MIR 136 256 -6 230 286 0 0 chr1 240636687 240636736 -2027617 + polypyrimidine Low_complexity Low_complexity 3 51 0 521 227 31 52 chr1 240637353 240637547 -2026806 - MIR3 SINE MIR -3 205 16 2602 30 7 0 chr1 240639349 240639649 -2024704 + AluY SINE Alu 1 302 -9 182 128 26 0 chr1 240641108 240641147 -2023206 + T-rich Low_complexity Low_complexity 3 42 0 218 222 0 0 chr1 240641857 240641902 -2022451 + A-rich Low_complexity Low_complexity 1 45 0 222 326 21 0 chr1 240642751 240642846 -2021507 - MIR3 SINE MIR -10 198 102 668 264 118 38 chr1 240643035 240643524 -2020829 - L2 LINE L2 -3 3310 2781 21 36 0 0 chr1 240643565 240643593 -2020760 + AT_rich Low_complexity Low_complexity 1 28 0 1640 158 7 7 chr1 240643615 240643900 -2020453 - 7SLRNA srpRNA srpRNA -15 305 21 2280 100 0 0 chr1 240643933 240644223 -2020130 - AluSx SINE Alu -22 290 1 222 118 0 0 chr1 240645920 240645954 -2018399 + (A)n Simple_repeat Simple_repeat 1 34 0 414 263 32 3 chr1 240649065 240649253 -2015100 + MIR SINE MIR 8 259 -3 221 310 93 0 chr1 240651420 240651495 -2012858 + MIR3 SINE MIR 3 70 -138 222 37 0 0 chr1 240651495 240651522 -2012831 + (CCTG)n Simple_repeat Simple_repeat 3 29 0 221 310 93 0 chr1 240651522 240651575 -2012778 + MIR3 SINE MIR 70 143 -65 654 272 33 9 chr1 240651904 240652117 -2012236 + MIR SINE MIR 35 252 -10 212 318 11 45 chr1 240652207 240652295 -2012058 + L2 LINE L2 2980 3064 -208 519 233 173 0 chr1 240652419 240652569 -2011784 + MER45A DNA AcHobo 1 176 -2 2998 232 16 5 chr1 240652655 240653294 -2011059 - MER82 DNA MER2_type -7 646 1 892 159 0 0 chr1 240654045 240654177 -2010176 - FLAM_C SINE Alu 0 133 2 423 0 0 0 chr1 240655667 240655714 -2008639 + (CA)n Simple_repeat Simple_repeat 2 48 0 197 224 86 17 chr1 240655764 240655822 -2008531 - L2 LINE L2 -66 3206 3145 538 233 74 48 chr1 240655898 240656087 -2008266 + MIR SINE MIR 12 205 -57 225 171 0 0 chr1 240656157 240656198 -2008155 + MIR SINE MIR 222 262 0 270 275 114 38 chr1 240657231 240657362 -2006991 + L2 LINE L2 3172 3312 -1 444 279 41 41 chr1 240657420 240657617 -2006736 - MIR SINE MIR 0 262 66 245 284 84 21 chr1 240657867 240657962 -2006391 + L2 LINE L2 3159 3259 -13 227 102 102 0 chr1 240658357 240658406 -2005947 + A-rich Low_complexity Low_complexity 1 54 0 310 371 100 0 chr1 240658466 240658695 -2005658 + MIR SINE MIR 11 262 0 391 287 0 17 chr1 240658711 240658826 -2005527 - L2 LINE L2 0 3272 3160 555 262 99 83 chr1 240658877 240659309 -2005044 + MLT1H LTR MaLR 111 549 0 650 248 8 0 chr1 240659325 240659458 -2004895 - MER58B DNA MER1_type 0 341 208 225 271 0 43 chr1 240659437 240659507 -2004846 - MER58B DNA MER1_type -274 67 1 * 961 256 172 8 chr1 240659655 240660015 -2004338 - LTR16C LTR ERVL 0 491 73 1723 226 22 16 chr1 240660272 240660724 -2003629 - MLT1C LTR MaLR -12 455 1 317 235 72 42 chr1 240660724 240660840 -2003513 - L2 LINE L2 -1234 2080 1956 1873 152 40 10 chr1 240660840 240661143 -2003210 + AluJo SINE Alu 1 312 0 317 235 72 42 chr1 240661143 240661192 -2003161 - L2 LINE L2 -1358 1956 1910 290 323 8 39 chr1 240661716 240661846 -2002507 - MIR SINE MIR -58 204 79 203 156 0 0 chr1 240661890 240661922 -2002431 + GA-rich Low_complexity Low_complexity 2 33 0 262 228 11 87 chr1 240662211 240662303 -2002050 - L2 LINE L2 -8 3264 3180 204 256 151 0 chr1 240662462 240662548 -2001805 - MIR SINE MIR -1 261 163 199 319 127 18 chr1 240663020 240663032 -2001321 - L2 LINE L2 0 3313 3304 192 77 0 0 chr1 240663032 240663058 -2001295 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 199 319 127 18 chr1 240663058 240663211 -2001142 - L2 LINE L2 -9 3304 3130 1762 179 7 7 chr1 240663212 240663509 -2000844 + AluJb SINE Alu 1 297 -15 222 349 63 0 chr1 240663564 240663690 -2000663 - MIR SINE MIR -12 250 117 594 284 0 0 chr1 240663823 240663971 -2000382 + MER69 DNA AcHobo 3 150 -2376 425 190 0 13 chr1 240663963 240664042 -2000311 + MER69 DNA AcHobo 2449 2526 0 * 251 111 0 22 chr1 240664437 240664482 -1999871 + (GGGA)n Simple_repeat Simple_repeat 1 44 0 196 213 0 21 chr1 240664704 240664751 -1999602 + L2 LINE L2 1863 1908 -1406 402 308 60 50 chr1 240664938 240665419 -1998934 + L2 LINE L2 2299 2784 -530 195 233 0 117 chr1 240665566 240665669 -1998684 + L2 LINE L2 2972 3062 -210 257 345 27 32 chr1 240665769 240665989 -1998364 - L2 LINE L2 -415 2899 2681 2137 141 0 0 chr1 240666207 240666519 -1997834 + AluSx SINE Alu 1 312 0 541 229 87 38 chr1 240667391 240667574 -1996779 + MIR SINE MIR 23 214 -48 2212 109 10 0 chr1 240667758 240668062 -1996291 + AluSx SINE Alu 2 308 -4 1998 90 0 0 chr1 240668114 240668369 -1995984 + AluSg SINE Alu 50 304 -6 576 153 8 25 chr1 240668371 240668489 -1995864 - L1MB5 LINE L1 -145 6029 5914 376 364 16 16 chr1 240668548 240668735 -1995618 + MIR SINE MIR 17 203 -59 2154 121 10 3 chr1 240668848 240669155 -1995198 + AluSx SINE Alu 3 311 -1 425 249 85 42 chr1 240669278 240669443 -1994910 + MIR SINE MIR 21 192 -70 1528 147 8 27 chr1 240669446 240669705 -1994648 + AluJo SINE Alu 27 280 -32 389 239 43 34 chr1 240670805 240670922 -1993431 + MIR3 SINE MIR 12 129 -79 1801 110 4 0 chr1 240671158 240671403 -1992950 - AluSx SINE Alu -35 277 32 228 175 191 0 chr1 240671496 240671559 -1992794 + MIR SINE MIR 90 164 -98 421 291 35 35 chr1 240673302 240673474 -1990879 - MIR SINE MIR -71 191 20 1097 232 56 63 chr1 240673881 240674066 -1990287 + MLT1C LTR MaLR 10 195 -272 2356 109 0 0 chr1 240674066 240674378 -1989975 + AluSx SINE Alu 1 312 0 1097 232 56 63 chr1 240674378 240674653 -1989700 + MLT1C LTR MaLR 195 467 0 207 248 52 98 chr1 240674653 240674806 -1989547 + L2 LINE L2 2857 3002 -270 2249 108 7 0 chr1 240675588 240675884 -1988469 + AluSg SINE Alu 1 298 -12 360 0 0 0 chr1 240676123 240676163 -1988190 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1829 139 3 50 chr1 240676165 240676467 -1987886 - AluJb SINE Alu -24 288 1 539 105 0 0 chr1 240676495 240676571 -1987782 + AluS SINE Alu 2 77 -236 1933 142 0 58 chr1 240676625 240676758 -1987595 + AluSg SINE Alu 1 140 -170 1856 112 32 45 chr1 240676758 240677072 -1987281 + AluSp SINE Alu 1 310 -3 1933 142 0 58 chr1 240677072 240677263 -1987090 + AluSg SINE Alu 140 306 -4 725 251 67 77 chr1 240678168 240678571 -1985782 + MLT1K LTR MaLR 188 586 -2 1600 183 20 23 chr1 240679272 240679578 -1984775 + AluJo SINE Alu 1 305 -7 317 301 123 20 chr1 240679944 240680090 -1984263 - MIR3 SINE MIR -25 183 23 273 119 0 0 chr1 240681684 240681726 -1982627 + (A)n Simple_repeat Simple_repeat 1 42 0 24 67 0 0 chr1 240690663 240690708 -1973645 + AT_rich Low_complexity Low_complexity 1 45 0 241 351 0 0 chr1 240691190 240691287 -1973066 + G-rich Low_complexity Low_complexity 1 97 0 30 0 0 0 chr1 240691535 240691565 -1972788 + AT_rich Low_complexity Low_complexity 1 30 0 287 105 18 0 chr1 240692444 240692501 -1971852 + (TA)n Simple_repeat Simple_repeat 1 58 0 578 232 183 89 chr1 240698355 240698859 -1965494 + L1M2 LINE L1 404 954 -5895 219 83 0 0 chr1 240698904 240698918 -1965435 + (CCG)n Simple_repeat Simple_repeat 1 14 -22 210 37 0 0 chr1 240698918 240698945 -1965408 + (TCC)n Simple_repeat Simple_repeat 1 27 0 219 83 0 0 chr1 240698945 240698966 -1965387 + (CCG)n Simple_repeat Simple_repeat 13 36 0 322 243 201 72 chr1 240717308 240717571 -1946782 - L1M2 LINE L1 -6042 807 511 206 62 31 0 chr1 240719194 240719226 -1945127 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 0 0 0 chr1 240723702 240723732 -1940621 + (TG)n Simple_repeat Simple_repeat 2 31 0 483 286 40 0 chr1 240724140 240724266 -1940087 + L2 LINE L2 3165 3295 -18 308 236 56 22 chr1 240724271 240724360 -1939993 + GA-rich Low_complexity Low_complexity 3 94 0 243 328 23 53 chr1 240724637 240724768 -1939585 - MIR SINE MIR -75 187 61 29 60 0 0 chr1 240726141 240726191 -1938162 + AT_rich Low_complexity Low_complexity 1 50 0 223 233 0 0 chr1 240726677 240726720 -1937633 + GA-rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr1 240727916 240727938 -1936415 + AT_rich Low_complexity Low_complexity 1 22 0 243 261 126 82 chr1 240729290 240729497 -1934856 + MIR SINE MIR 6 221 -41 7147 139 48 18 chr1 240730108 240731304 -1933049 - Tigger3b DNA MER2_type 0 1231 1 1267 268 51 42 chr1 240731584 240732017 -1932336 + MLT1J LTR MaLR 1 437 -74 2749 150 40 21 chr1 240732018 240732499 -1931854 + L1MA7 LINE L1 5537 6026 -265 679 264 75 54 chr1 240732500 240732833 -1931520 - MLT1J2 LTR MaLR -67 383 44 2438 47 0 0 chr1 240733200 240733479 -1930874 + AluY SINE Alu 28 306 -5 1591 144 0 34 chr1 240733547 240733811 -1930542 + AluJo SINE Alu 38 292 -20 209 171 0 0 chr1 240734001 240734036 -1930317 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 191 133 133 0 chr1 240734693 240734738 -1929615 + L2 LINE L2 3213 3263 -9 410 302 5 78 chr1 240735169 240735361 -1928992 + MER5B DNA MER1_type 1 178 0 216 350 40 10 chr1 240735470 240735570 -1928783 + MIR3 SINE MIR 66 168 -40 184 222 19 37 chr1 240737144 240737198 -1927155 + L2 LINE L2 1389 1441 -1873 2330 94 0 7 chr1 240737265 240737572 -1926781 + AluSx SINE Alu 1 305 -7 182 321 62 12 chr1 240737628 240737709 -1926644 - L2 LINE L2 -20 3252 3168 2249 116 3 0 chr1 240739228 240739538 -1924815 - AluSx SINE Alu -1 311 1 673 258 31 6 chr1 240739586 240739749 -1924604 + MIR SINE MIR 3 169 -93 181 280 80 27 chr1 240739726 240739801 -1924552 + L2 LINE L2 3194 3272 0 * 673 220 167 0 chr1 240739802 240739952 -1924401 + FAM SINE Alu 1 175 0 1323 204 22 50 chr1 240740302 240740620 -1923733 + MER46C DNA MER2_type 30 338 0 180 0 0 0 chr1 240740767 240740787 -1923566 + (GA)n Simple_repeat Simple_repeat 1 20 0 512 204 139 33 chr1 240741747 240742011 -1922342 - MER33 DNA MER1_type -8 355 5 197 261 0 58 chr1 240742526 240742595 -1921758 + L2 LINE L2 2255 2319 -995 728 205 7 13 chr1 240743095 240743246 -1921107 + AluJo SINE Alu 119 268 -44 406 149 0 15 chr1 240743243 240743310 -1921043 + FLAM SINE Alu 56 121 -22 * 236 51 0 26 chr1 240743310 240743349 -1921004 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 251 150 25 0 chr1 240744643 240744682 -1919671 + MER53 DNA DNA 1 40 -149 1095 158 61 18 chr1 240744682 240744910 -1919443 - MSTB1 LTR MaLR 0 432 195 1210 85 61 0 chr1 240744910 240745074 -1919279 - AluSx SINE Alu -9 301 128 637 118 0 0 chr1 240745074 240745159 -1919194 - AluSx SINE Alu -227 85 1 1170 113 30 25 chr1 240745159 240745362 -1918991 - MSTB1 LTR MaLR -228 204 1 446 124 0 214 chr1 240745373 240745518 -1918835 + MER53 DNA DNA 75 188 -1 2289 95 13 0 chr1 240745597 240745901 -1918452 - AluSp SINE Alu -5 308 1 3794 169 15 25 chr1 240746277 240746316 -1918037 - L1MB2 LINE L1 -10 6161 6123 2310 83 7 3 chr1 240746316 240746605 -1917748 - AluY SINE Alu -21 290 1 3794 169 15 25 chr1 240746605 240747286 -1917067 - L1MB2 LINE L1 -48 6123 5448 618 269 63 40 chr1 240747454 240747677 -1916676 - MIR SINE MIR 0 262 35 1438 174 30 36 chr1 240747677 240747982 -1916371 + AluJo SINE Alu 1 303 -9 2568 192 17 15 chr1 240748170 240748712 -1915641 - L1MB7 LINE L1 0 6184 5642 841 127 0 0 chr1 240748712 240748830 -1915523 - MLT1A1 LTR MaLR 0 365 248 586 106 0 12 chr1 240748831 240748916 -1915437 - THE1C LTR MaLR 0 428 345 855 151 63 13 chr1 240748941 240749100 -1915253 - THE1C LTR MaLR -208 167 1 * 1236 205 52 15 chr1 240749100 240749339 -1915014 - MLT1A1 LTR MaLR -116 249 1 1244 202 29 4 chr1 240749339 240749582 -1914771 - L1MB7 LINE L1 -538 5646 5398 454 160 64 0 chr1 240749655 240749749 -1914604 + MIR SINE MIR 47 146 -116 282 398 42 4 chr1 240749855 240750091 -1914262 + L2 LINE L2 2731 2975 -339 1902 121 4 0 chr1 240750681 240750946 -1913407 + AluSx SINE Alu 34 299 -13 244 330 59 0 chr1 240751608 240751726 -1912627 + L2 LINE L2 3141 3265 -7 1578 159 37 15 chr1 240752075 240752409 -1911944 + AluJo SINE Alu 10 349 0 189 0 0 0 chr1 240754419 240754440 -1909913 + (A)n Simple_repeat Simple_repeat 1 21 0 723 299 93 20 chr1 240755144 240755542 -1908811 - LTR16A LTR ERVL 0 450 24 1485 334 55 58 chr1 240755749 240756120 -1908233 - ERVL LTR ERVL -448 5316 4946 1124 131 0 12 chr1 240756120 240756288 -1908065 - FRAM SINE Alu 0 166 1 315 0 0 0 chr1 240756298 240756333 -1908020 + (TG)n Simple_repeat Simple_repeat 2 36 0 1965 128 25 11 chr1 240756333 240756614 -1907739 - AluSx SINE Alu -27 285 1 1485 334 55 58 chr1 240756614 240757402 -1906951 - ERVL LTR ERVL -825 4939 4148 4581 320 60 40 chr1 240757794 240759472 -1904881 - ERVL LTR ERVL -1781 3983 2236 1880 164 3 22 chr1 240759472 240759783 -1904570 - AluJb SINE Alu -7 305 1 4581 320 60 40 chr1 240759783 240760660 -1903693 - ERVL LTR ERVL -3528 2236 1378 215 222 0 0 chr1 240760789 240760834 -1903519 + (CA)n Simple_repeat Simple_repeat 2 46 0 2478 289 43 50 chr1 240760884 240761909 -1902444 - ERVL LTR ERVL -3759 1237 220 272 255 10 0 chr1 240762383 240762485 -1901868 + (CA)n Simple_repeat Simple_repeat 1 103 0 206 105 26 0 chr1 240762956 240762994 -1901359 + CT-rich Low_complexity Low_complexity 2 40 0 459 304 96 16 chr1 240763859 240764172 -1900181 + MLT1L LTR MaLR 163 500 -115 2035 139 0 30 chr1 240764231 240764532 -1899821 + AluJo SINE Alu 3 294 -18 3056 137 58 15 chr1 240764536 240765083 -1899270 - L1MC3 LINE L1 -13 7772 7202 227 267 40 10 chr1 240765084 240765185 -1899168 - MLT1F1 LTR MaLR -428 139 36 1024 105 44 22 chr1 240765186 240765367 -1898986 - L1MC3 LINE L1 -688 7097 6913 2441 73 0 0 chr1 240765872 240766161 -1898192 + AluSg1 SINE Alu 1 289 -20 578 210 0 6 chr1 240766569 240766750 -1897603 + (TG)n Simple_repeat Simple_repeat 1 180 0 500 212 0 6 chr1 240766794 240766973 -1897380 + (TG)n Simple_repeat Simple_repeat 1 178 0 2242 103 3 3 chr1 240767390 240767691 -1896662 + AluSc SINE Alu 1 301 -8 344 264 50 107 chr1 240767800 240768080 -1896273 + Charlie8 DNA MER1_type 67 1428 -989 2364 89 0 7 chr1 240768277 240768580 -1895773 + AluSq SINE Alu 1 301 -12 21 36 0 0 chr1 240768765 240768793 -1895560 + AT_rich Low_complexity Low_complexity 1 28 0 1155 117 41 25 chr1 240769492 240769689 -1894664 - L1MA2 LINE L1 -77 6227 6028 451 296 59 0 chr1 240769905 240770057 -1894296 - MER21B LTR ERV1 -58 805 645 339 162 44 0 chr1 240770057 240770125 -1894228 + L1MA1 LINE L1 6067 6137 -165 2167 220 39 93 chr1 240770147 240770821 -1893532 - MER21B LTR ERV1 -226 637 1 485 297 102 62 chr1 240771077 240771262 -1893091 + MLT1K LTR MaLR 81 257 -331 1839 167 3 3 chr1 240771262 240771562 -1892791 - AluJo SINE Alu -12 300 1 485 297 102 62 chr1 240771562 240771857 -1892496 + MLT1K LTR MaLR 257 580 -8 23 54 0 0 chr1 240772318 240772355 -1891998 + AT_rich Low_complexity Low_complexity 1 37 0 2174 113 10 0 chr1 240772357 240772658 -1891695 + AluY SINE Alu 8 311 0 388 258 0 32 chr1 240772667 240772791 -1891562 - L2 LINE L2 -12 3301 3182 378 195 97 9 chr1 240772878 240772991 -1891362 + L1M4 LINE L1 4616 4738 -1408 438 302 107 19 chr1 240773053 240773212 -1891141 + MER5A DNA MER1_type 7 179 -10 2289 47 0 0 chr1 240773317 240773575 -1890778 - AluY SINE Alu -53 258 1 1106 160 9 50 chr1 240773896 240774115 -1890238 + MER20 DNA MER1_type 1 210 -9 1400 76 82 0 chr1 240774718 240774902 -1889451 + THE1B LTR MaLR 2 200 -164 2240 102 47 39 chr1 240774906 240775076 -1889277 + THE1B LTR MaLR 1 168 -196 2280 109 0 3 chr1 240775076 240775378 -1888975 + AluSc SINE Alu 1 301 -8 2240 102 47 39 chr1 240775378 240775568 -1888785 + THE1B LTR MaLR 168 364 0 840 249 103 60 chr1 240775806 240776272 -1888081 + MLT1J LTR MaLR 23 508 -3 2375 91 13 0 chr1 240776460 240776768 -1887585 + AluSq SINE Alu 1 312 -1 965 151 6 6 chr1 240776856 240777015 -1887338 + FRAM SINE Alu 1 154 -22 182 284 116 11 chr1 240777067 240777162 -1887191 - MER5A DNA MER1_type -69 120 16 386 121 15 0 chr1 240777838 240777904 -1886449 - MER5A DNA MER1_type -30 159 93 1611 176 65 3 chr1 240777922 240778229 -1886124 + MLT1A1 LTR MaLR 40 365 0 235 250 17 0 chr1 240778231 240778291 -1886062 - MER5A DNA MER1_type -95 94 34 376 266 147 27 chr1 240778402 240778586 -1885767 + MIR SINE MIR 25 230 -32 1690 152 57 0 chr1 240779271 240779554 -1884799 + AluJb SINE Alu 1 299 -13 733 187 13 19 chr1 240779988 240780143 -1884210 + L1PB4 LINE L1 5995 6148 -8 488 301 83 50 chr1 240780304 240780726 -1883627 + L2 LINE L2 2361 2796 -518 223 291 19 29 chr1 240781300 240781403 -1882950 - MER5A DNA MER1_type -56 133 32 2417 87 0 0 chr1 240781546 240781846 -1882507 + AluSg SINE Alu 5 304 -6 223 263 0 0 chr1 240782070 240782127 -1882226 + L2 LINE L2 3216 3272 0 459 295 60 75 chr1 240783158 240784198 -1880155 + L1MC1 LINE L1 901 5983 -350 * 1772 178 15 18 chr1 240784021 240784352 -1880001 + L1MB7 LINE L1 5813 6142 -42 1048 179 0 11 chr1 240784389 240784568 -1879785 + AluJo SINE Alu 123 299 -13 2361 157 50 22 chr1 240784751 240785152 -1879201 - MSTC LTR MaLR -1 427 16 328 154 0 66 chr1 240785293 240785384 -1878969 + MER20B DNA MER1_type 548 632 -151 238 183 38 38 chr1 240785398 240785529 -1878824 + (TA)n Simple_repeat Simple_repeat 1 131 0 687 162 77 0 chr1 240785608 240785725 -1878628 - FLAM_A SINE Alu -7 126 1 218 280 30 10 chr1 240785822 240785922 -1878431 + L2 LINE L2 3160 3261 -52 246 67 0 0 chr1 240787036 240787066 -1877287 - L1PA16 LINE L1 -108 6058 6029 1749 150 50 4 chr1 240787110 240787390 -1876963 + AluJb SINE Alu 1 293 -19 254 280 60 10 chr1 240787405 240787505 -1876848 + MIR SINE MIR 144 248 -14 27 0 0 0 chr1 240787683 240787710 -1876643 + AT_rich Low_complexity Low_complexity 1 27 0 222 339 39 0 chr1 240787902 240788029 -1876324 + L3b LINE CR1 1270 1401 -182 278 321 18 18 chr1 240788208 240788320 -1876033 - MIR3 SINE MIR -21 187 76 235 275 193 0 chr1 240789434 240789543 -1874810 - MIR3 SINE MIR -68 140 11 276 172 81 50 chr1 240790264 240790363 -1873990 + L1MB2 LINE L1 6070 6171 0 1797 169 0 26 chr1 240790778 240791085 -1873268 - AluJo SINE Alu -13 299 1 449 343 59 10 chr1 240792482 240792720 -1871633 - MIR SINE MIR -12 250 3 688 258 11 11 chr1 240793119 240793309 -1871044 + MIR SINE MIR 26 215 -47 2224 115 0 3 chr1 240793522 240793817 -1870536 + AluSq SINE Alu 1 294 -19 1284 6 17 28 chr1 240793833 240794013 -1870340 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2363 76 0 0 chr1 240794021 240794346 -1870007 + AluY SINE Alu 21 345 0 356 290 90 72 chr1 240794957 240795287 -1869066 - L2 LINE L2 -43 3270 2940 2241 112 7 0 chr1 240795287 240795583 -1868770 + AluSx SINE Alu 1 298 -14 356 290 90 72 chr1 240795583 240795745 -1868608 - L2 LINE L2 -373 2940 2782 2185 123 0 3 chr1 240798785 240799093 -1865260 + AluSq SINE Alu 1 307 -6 192 331 37 37 chr1 240800122 240800258 -1864095 + MIR SINE MIR 73 208 -54 2155 133 0 0 chr1 240800311 240800611 -1863742 + AluSx SINE Alu 1 300 -12 1558 162 50 30 chr1 240800626 240800923 -1863430 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr1 240801071 240801093 -1863260 + AT_rich Low_complexity Low_complexity 1 22 0 2403 109 0 0 chr1 240801294 240801606 -1862747 - AluSx SINE Alu 0 312 1 1053 270 114 39 chr1 240802247 240802933 -1861420 + L1MC5 LINE L1 7260 7912 -49 21 0 0 0 chr1 240803476 240803497 -1860856 + AT_rich Low_complexity Low_complexity 1 21 0 182 236 18 18 chr1 240804917 240804972 -1859381 - L2 LINE L2 -1 3312 3258 2184 101 24 0 chr1 240807159 240807455 -1856898 + AluSx SINE Alu 4 306 -6 2383 103 3 0 chr1 240807686 240807998 -1856355 - AluSq SINE Alu 0 313 1 226 312 13 13 chr1 240809515 240809592 -1854761 - MIR SINE MIR -133 129 53 611 213 0 22 chr1 240809597 240809733 -1854620 + MIR SINE MIR 109 241 -21 1030 87 0 0 chr1 240809851 240809978 -1854375 + FRAM SINE Alu 27 153 -23 357 227 92 61 chr1 240810579 240810742 -1853611 + MER5B DNA MER1_type 10 177 -1 228 135 0 0 chr1 240811543 240811580 -1852773 + (GGA)n Simple_repeat Simple_repeat 3 39 0 711 272 109 52 chr1 240811803 240812307 -1852046 - L1MC4 LINE L1 -1 8041 7509 1306 104 0 0 chr1 240814123 240814296 -1850057 - AluSq SINE Alu -12 301 129 1790 157 28 0 chr1 240814464 240814750 -1849603 + AluJb SINE Alu 1 294 -18 24 0 0 0 chr1 240815188 240815212 -1849141 + AT_rich Low_complexity Low_complexity 1 24 0 317 188 0 29 chr1 240815864 240815933 -1848420 - MLT1C LTR MaLR 0 467 401 2323 105 3 0 chr1 240815933 240816239 -1848114 + AluSg SINE Alu 1 307 -3 1187 209 146 37 chr1 240816264 240816641 -1847712 - MLT1C LTR MaLR -49 418 1 23 54 0 0 chr1 240817666 240817703 -1846650 + AT_rich Low_complexity Low_complexity 1 37 0 2065 139 3 0 chr1 240817816 240818125 -1846228 + AluSx SINE Alu 1 310 -2 214 327 168 0 chr1 240818417 240818530 -1845823 + L2 LINE L2 3136 3267 -5 382 229 36 0 chr1 240819285 240819368 -1844985 + MER69 DNA AcHobo 13 98 -1128 1789 143 0 36 chr1 240819850 240820157 -1844196 - AluJo SINE Alu 0 309 13 301 338 23 93 chr1 240820396 240820535 -1843818 + L2 LINE L2 2896 3043 -229 2296 86 0 0 chr1 240820535 240820839 -1843514 + AluSg SINE Alu 1 304 0 301 338 23 93 chr1 240820839 240821092 -1843261 + L2 LINE L2 3043 3263 -9 1207 94 0 0 chr1 240824218 240824406 -1839947 + FRAM SINE Alu 1 185 0 252 267 59 20 chr1 240825101 240825202 -1839151 + MLT1L LTR MaLR 120 224 -391 489 237 97 20 chr1 240825345 240825572 -1838781 + MLT1L LTR MaLR 335 610 -5 275 192 14 0 chr1 240825594 240825667 -1838686 + CT-rich Low_complexity Low_complexity 4 77 0 501 218 42 21 chr1 240825667 240825809 -1838544 + MIR3 SINE MIR 54 198 -10 421 232 24 40 chr1 240826888 240827013 -1837340 - MER5B DNA MER1_type -1 177 55 1696 142 18 25 chr1 240827218 240827493 -1836860 + AluJo SINE Alu 9 281 -31 321 254 45 96 chr1 240828107 240828327 -1836026 + HAL1 LINE L1 1541 1749 -758 216 208 0 19 chr1 240828801 240828854 -1835499 + L2 LINE L2 3262 3313 0 1953 163 42 3 chr1 240829179 240829510 -1834843 - MER2 DNA MER2_type 0 344 1 300 324 31 6 chr1 240829622 240829777 -1834576 - MIR SINE MIR -65 143 30 5961 202 33 15 chr1 240830149 240831468 -1832885 - Charlie1a DNA MER1_type -5 1450 108 1920 168 0 13 chr1 240831470 240831774 -1832579 + AluJo SINE Alu 1 300 -12 920 161 0 8 chr1 240831774 240832026 -1832327 + G-rich Low_complexity Low_complexity 1 249 0 261 222 0 0 chr1 240832191 240832254 -1832099 + GA-rich Low_complexity Low_complexity 3 65 0 428 209 25 134 chr1 240832258 240832399 -1831954 - Charlie1 DNA MER1_type -2659 102 1 2132 102 11 11 chr1 240833383 240833697 -1830656 - AluSq SINE Alu 0 314 1 1480 112 56 0 chr1 240833715 240833930 -1830423 - AluJo SINE Alu -54 258 32 1935 128 0 7 chr1 240835203 240835484 -1828869 + AluSx SINE Alu 1 279 -33 251 169 28 56 chr1 240835617 240835688 -1828665 - MIR SINE MIR -83 179 111 294 313 40 0 chr1 240835820 240835919 -1828434 + MIR SINE MIR 90 192 -70 2092 125 21 0 chr1 240836783 240837071 -1827282 + AluSx SINE Alu 1 294 -18 2425 95 3 0 chr1 240837088 240837392 -1826961 - AluSq SINE Alu -8 305 1 33 0 0 0 chr1 240837724 240837757 -1826596 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr1 240839273 240839302 -1825051 + AT_rich Low_complexity Low_complexity 1 29 0 272 343 47 12 chr1 240839418 240839587 -1824766 - MLT1L LTR MaLR -36 579 405 1408 161 88 49 chr1 240841505 240841645 -1822708 - AluJo SINE Alu -14 298 165 2339 91 10 0 chr1 240841645 240841941 -1822412 - AluSg SINE Alu -11 299 1 1408 161 88 49 chr1 240841941 240842085 -1822268 - AluJo SINE Alu -147 165 3 21 0 0 0 chr1 240842361 240842382 -1821971 + AT_rich Low_complexity Low_complexity 1 21 0 330 317 83 17 chr1 240842822 240842942 -1821411 - L2 LINE L2 -1 3271 3144 1821 83 4 4 chr1 240843036 240843277 -1821076 - AluY SINE Alu -4 307 67 24 77 0 0 chr1 240843429 240843481 -1820872 + AT_rich Low_complexity Low_complexity 1 52 0 643 311 71 9 chr1 240843611 240843836 -1820517 - MIR SINE MIR -3 259 21 793 179 0 8 chr1 240844018 240844152 -1820201 + FLAM_C SINE Alu 1 133 0 2863 184 59 2 chr1 240844216 240844252 -1820101 - MLT2B1 LTR ERVL -4 516 484 852 48 14 27 chr1 240844252 240844399 -1819954 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 2863 184 59 2 chr1 240844399 240844850 -1819503 - MLT2B1 LTR ERVL -36 484 1 184 232 0 134 chr1 240844980 240845062 -1819291 + L2 LINE L2 3241 3311 -2 1453 238 108 34 chr1 240846442 240846879 -1817474 - MLT1E LTR MaLR 0 593 125 327 245 9 94 chr1 240846902 240847008 -1817345 + L1MDa LINE L1 618 714 -5826 707 212 62 17 chr1 240847011 240847179 -1817174 + MLT1A2 LTR MaLR 1 179 -211 1233 179 104 43 chr1 240847179 240847459 -1816894 + AluJo SINE Alu 1 297 -15 970 146 154 27 chr1 240847488 240847748 -1816605 - LTR18B LTR ERVL 0 614 322 * 1229 155 10 5 chr1 240847744 240847938 -1816415 - LTR18B LTR ERVL -419 195 1 222 37 0 0 chr1 240847942 240847969 -1816384 + (TC)n Simple_repeat Simple_repeat 2 28 0 3397 181 14 39 chr1 240848001 240848714 -1815639 + L1MD2 LINE L1 5254 5948 -411 1141 213 175 20 chr1 240848818 240849161 -1815192 + L1MD2 LINE L1 5962 6357 -2 186 143 0 0 chr1 240849161 240849196 -1815157 + (TATG)n Simple_repeat Simple_repeat 2 36 0 257 322 87 17 chr1 240849310 240849425 -1814928 + MIR SINE MIR 75 197 -65 1140 164 171 103 chr1 240849791 240850072 -1814281 + AluJo SINE Alu 2 301 -1 628 305 5 0 chr1 240850117 240850314 -1814039 + L1MC4 LINE L1 6805 7002 -1040 34 24 0 0 chr1 240851132 240851173 -1813180 + AT_rich Low_complexity Low_complexity 1 41 0 519 295 159 51 chr1 240851260 240851542 -1812811 + HAL1b LINE L1 47 297 -1051 2116 92 67 0 chr1 240851542 240851825 -1812528 + AluSq SINE Alu 7 308 -5 519 295 159 51 chr1 240851825 240852141 -1812212 + HAL1b LINE L1 297 613 -735 338 340 50 44 chr1 240852509 240852588 -1811765 + L1M4 LINE L1 2451 2528 -3618 7968 33 2 0 chr1 240852588 240853516 -1810837 + L1PA4 LINE L1 5224 6153 -2 338 340 50 44 chr1 240853516 240853754 -1810599 + L1M4 LINE L1 2528 2770 -3376 2047 111 25 0 chr1 240853862 240854141 -1810212 + AluSx SINE Alu 1 286 -26 200 29 0 59 chr1 240854145 240854179 -1810174 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 5313 197 73 14 chr1 240854182 240855381 -1808972 - Charlie1a DNA MER1_type -185 1270 1 1912 227 19 24 chr1 240855384 240855918 -1808435 + L1ME1 LINE L1 2162 2692 -3454 582 107 0 0 chr1 240855919 240855994 -1808359 + AluS SINE Alu 2 76 -237 632 90 11 22 chr1 240855994 240856083 -1808270 - THE1B LTR MaLR -276 88 1 4290 234 64 39 chr1 240856083 240857528 -1806825 + L1ME1 LINE L1 3062 4542 -1604 968 209 0 0 chr1 240857585 240857743 -1806610 - FRAM SINE Alu -7 159 2 1347 152 0 0 chr1 240857761 240857952 -1806401 + AluJb SINE Alu 81 271 -41 2087 219 32 20 chr1 240857967 240858469 -1805884 + L1ME1 LINE L1 5611 6118 -48 1051 151 6 0 chr1 240858469 240858635 -1805718 + FRAM SINE Alu 1 161 -15 845 164 0 14 chr1 240858725 240858865 -1805488 + FLAM_C SINE Alu 2 139 -4 291 54 0 0 chr1 240859785 240859822 -1804531 + (CA)n Simple_repeat Simple_repeat 2 38 0 1239 187 23 0 chr1 240860482 240860696 -1803657 + MER20 DNA MER1_type 1 219 0 809 146 24 16 chr1 240861267 240861390 -1802963 - AluJb SINE Alu -23 289 166 3692 148 49 7 chr1 240861760 240862367 -1801986 + L1MB3 LINE L1 5544 6176 -7 301 225 358 13 chr1 240863298 240863449 -1800904 + MIR SINE MIR 48 250 -12 1311 263 82 44 chr1 240863614 240864112 -1800241 - MLT1L LTR MaLR 0 615 99 220 352 114 42 chr1 240864449 240864685 -1799668 - L2 LINE L2 0 3272 3020 24 32 0 0 chr1 240865157 240865188 -1799165 + AT_rich Low_complexity Low_complexity 1 31 0 3396 136 23 43 chr1 240865360 240865420 -1798933 + MER6A DNA MER2_type 3 63 -802 2039 118 7 3 chr1 240865420 240865708 -1798645 + AluSx SINE Alu 1 289 -23 3396 136 23 43 chr1 240865708 240866249 -1798104 + MER6A DNA MER2_type 63 592 -13 197 245 38 85 chr1 240866538 240866644 -1797709 - MER5A DNA MER1_type -28 161 61 206 225 0 0 chr1 240868199 240868239 -1796114 + CT-rich Low_complexity Low_complexity 3 42 0 232 170 482 9 chr1 240868296 240868408 -1795945 - MIR SINE MIR -90 172 8 554 306 97 11 chr1 240869042 240869310 -1795043 + L1ME LINE L1 5504 5794 -327 858 41 0 0 chr1 240870021 240870119 -1794234 + L1PA5 LINE L1 6052 6149 -5 2336 69 20 3 chr1 240870545 240870848 -1793505 + AluY SINE Alu 1 308 -3 721 214 0 8 chr1 240870858 240870989 -1793364 + AluJb SINE Alu 1 130 -182 2070 216 53 13 chr1 240871027 240871476 -1792877 - MLT1C LTR MaLR 0 467 1 2362 89 7 0 chr1 240871596 240871898 -1792455 + AluSp SINE Alu 1 304 -9 190 325 121 6 chr1 240872130 240872287 -1792066 + L2 LINE L2 2372 2546 -768 605 282 32 44 chr1 240872301 240872553 -1791800 - MIR SINE MIR 0 262 14 230 253 180 33 chr1 240872560 240872710 -1791643 + L2 LINE L2 1253 1424 -1890 584 166 13 33 chr1 240872741 240872892 -1791461 + CT-rich Low_complexity Low_complexity 1 148 0 1674 152 0 50 chr1 240872895 240873192 -1791161 - AluJo SINE Alu -30 282 1 243 140 0 0 chr1 240873324 240873374 -1790979 + (T)n Simple_repeat Simple_repeat 1 50 0 2594 68 0 0 chr1 240873418 240873728 -1790625 - L1PA8 LINE L1 0 6172 5863 676 232 65 61 chr1 240873767 240874030 -1790323 + Charlie4 DNA MER1_type 18 281 -1680 649 296 101 13 chr1 240874081 240874389 -1789964 + L2 LINE L2 2257 2591 -723 303 290 85 28 chr1 240874357 240874533 -1789820 + L2 LINE L2 2847 3032 -281 * 343 207 0 61 chr1 240874574 240874656 -1789697 + L2 LINE L2 3164 3240 -73 365 293 63 68 chr1 240875002 240875207 -1789146 + MIR SINE MIR 20 223 -39 2540 45 3 13 chr1 240875351 240875665 -1788688 + AluY SINE Alu 1 311 0 225 0 0 0 chr1 240876301 240876326 -1788027 + (T)n Simple_repeat Simple_repeat 1 25 0 1675 153 7 22 chr1 240876915 240877190 -1787163 + AluSx SINE Alu 1 271 -41 329 61 0 20 chr1 240877196 240877245 -1787108 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 334 263 240 12 chr1 240877885 240878056 -1786297 - MIR SINE MIR 0 262 53 301 241 111 19 chr1 240878068 240878176 -1786177 - LTR67 LTR ERVL -5 552 435 2293 96 3 0 chr1 240878198 240878499 -1785854 + AluSg SINE Alu 1 302 -8 507 314 24 56 chr1 240878634 240878886 -1785467 - LTR67 LTR ERVL -235 322 79 977 62 86 0 chr1 240878969 240879097 -1785256 - MER85 DNA T2_type 0 139 1 499 284 22 68 chr1 240879530 240879590 -1784763 - MIR SINE MIR -50 212 151 2514 47 7 0 chr1 240879590 240879890 -1784463 - AluY SINE Alu -9 302 1 499 284 22 68 chr1 240879890 240880051 -1784302 - MIR SINE MIR -111 151 1 611 26 13 0 chr1 240881609 240881626 -1782727 + (TAGA)n Simple_repeat Simple_repeat 1 95 0 611 26 13 0 chr1 240881626 240881703 -1782650 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 398 305 61 41 chr1 240882090 240882287 -1782066 + MIR SINE MIR 12 212 -50 2199 139 48 11 chr1 240883101 240883454 -1780899 + MER47A DNA MER2_type 1 366 0 288 298 21 32 chr1 240884644 240884738 -1779615 - L2 LINE L2 -2 3270 3178 317 232 0 0 chr1 240884810 240884879 -1779474 + MER112 DNA MER1_type 17 85 -175 672 244 33 6 chr1 240884908 240885088 -1779265 + MER112 DNA MER1_type 67 251 -9 572 303 130 47 chr1 240885639 240886170 -1778183 + L2 LINE L2 2086 2660 -654 2986 83 6 0 chr1 240886410 240886772 -1777581 + THE1B LTR MaLR 1 364 0 432 327 136 50 chr1 240887632 240888339 -1776014 - L2 LINE L2 -1 3271 2488 1198 240 79 3 chr1 240888339 240888844 -1775509 + MLT2F LTR ERVL 1 610 -53 459 276 62 29 chr1 240888957 240889167 -1775186 - L2 LINE L2 -807 2507 2291 1560 136 42 28 chr1 240889743 240889768 -1774585 - L1MA7 LINE L1 -5 6286 6263 2128 101 3 7 chr1 240889768 240890056 -1774297 + AluSc SINE Alu 1 287 -22 1560 136 42 28 chr1 240890056 240890316 -1774037 - L1MA7 LINE L1 -28 6263 5997 2242 99 0 0 chr1 240890688 240890994 -1773359 + AluSx SINE Alu 1 306 0 393 300 8 8 chr1 240892091 240892211 -1772142 - MARNA DNA Mariner -372 214 95 1161 298 59 16 chr1 240892307 240892679 -1771674 + MLT1K LTR MaLR 39 426 -162 2139 101 7 7 chr1 241092982 241093279 -1571074 + AluSx SINE Alu 1 297 -15 534 268 169 13 chr1 241093283 241093596 -1570757 - MLT1C LTR MaLR -105 362 1 1932 207 150 145 chr1 241093596 241093697 -1570656 - L1M4 LINE L1 -1275 4871 4772 2194 118 3 0 chr1 241093697 241094002 -1570351 + AluSq SINE Alu 1 306 -7 1932 207 150 145 chr1 241094002 241094471 -1569882 - L1M4 LINE L1 -1374 4772 4307 732 219 0 0 chr1 241094471 241094608 -1569745 - FAM SINE Alu -4 45 1 1932 207 150 145 chr1 241094608 241094663 -1569690 - L1M4 LINE L1 -1839 4307 4254 2245 102 3 40 chr1 241094663 241094985 -1569368 - AluSx SINE Alu -2 310 1 1692 145 59 14 chr1 241094985 241095274 -1569079 - AluSx SINE Alu -10 302 1 1932 207 150 145 chr1 241095274 241096042 -1568311 - L1M4 LINE L1 -1891 4255 3331 539 154 11 0 chr1 241096056 241096147 -1568206 - AluJ/FLAM SINE Alu -215 97 6 642 241 71 12 chr1 241096194 241096447 -1567906 - L1M4 LINE L1 -2910 3236 2969 795 178 8 0 chr1 241099390 241099519 -1564834 - FLAM_A SINE Alu 0 133 4 2525 73 0 0 chr1 241100650 241100950 -1563403 + AluY SINE Alu 1 300 -11 420 284 77 29 chr1 241100952 241101160 -1563193 + L1MC/D LINE L1 5603 5820 -1988 2706 89 129 5 chr1 241101305 241101700 -1562653 - LTR7 LTR ERV1 -2 448 5 197 296 130 61 chr1 241101747 241101862 -1562491 - L2 LINE L2 -7 3306 3184 1502 160 65 68 chr1 241102439 241102746 -1561607 - AluJo SINE Alu -6 306 1 405 244 155 12 chr1 241103046 241103214 -1561139 - MIR3 SINE MIR 0 208 17 2205 84 0 11 chr1 241103419 241103723 -1560630 - AluSx SINE Alu 0 301 1 223 293 236 16 chr1 241104185 241104308 -1560045 - L2 LINE L2 -7 3265 3116 23 33 0 0 chr1 241104325 241104355 -1559998 + AT_rich Low_complexity Low_complexity 1 30 0 2184 109 3 3 chr1 241104363 241104657 -1559696 + AluSx SINE Alu 1 294 -18 1183 213 4 8 chr1 241104867 241105102 -1559251 + AluJo SINE Alu 63 296 -16 2969 199 166 10 chr1 241105106 241106163 -1558190 + L1MB8 LINE L1 4966 6333 -1 221 208 218 40 chr1 241106192 241106293 -1558060 - MIR SINE MIR -34 228 110 1595 124 176 0 chr1 241106317 241106567 -1557786 - AluSg SINE Alu -15 295 2 333 250 281 0 chr1 241106637 241106833 -1557520 - L2 LINE L2 -469 2845 2595 1324 199 129 3 chr1 241106846 241107148 -1557205 + Tigger7 DNA MER2_type 1 340 -2147 614 195 55 16 chr1 241107148 241107276 -1557077 + Tigger7 DNA MER2_type 2341 2473 -14 561 197 161 55 chr1 241109642 241109860 -1554493 + MIR SINE MIR 22 262 0 236 33 0 0 chr1 241109979 241110009 -1554344 - L1MA1 LINE L1 -6 6296 6267 236 33 0 0 chr1 241110017 241110047 -1554306 - L1MA1 LINE L1 -6 6296 6267 229 67 0 0 chr1 241110055 241110085 -1554268 - L1MA1 LINE L1 -6 6296 6267 236 33 0 0 chr1 241110093 241110123 -1554230 - L1MA1 LINE L1 -6 6296 6267 343 240 126 63 chr1 241110560 241110735 -1553618 + MER63A DNA MER1_type 23 208 -2 232 335 67 30 chr1 241110740 241110904 -1553449 + MIR SINE MIR 72 241 -21 360 245 90 32 chr1 241111188 241111339 -1553014 - MIR SINE MIR -64 144 30 239 292 33 25 chr1 241111352 241111472 -1552881 + L1ME LINE L1 5702 5822 -340 192 77 0 0 chr1 241111494 241111520 -1552833 + (CATATA)n Simple_repeat Simple_repeat 4 29 0 1055 141 40 45 chr1 241111547 241111745 -1552608 - AluJb SINE Alu -32 280 84 2305 102 0 16 chr1 241111777 241112091 -1552262 + AluSx SINE Alu 1 309 -3 3978 266 103 28 chr1 241113288 241113332 -1551021 + L1M4 LINE L1 117 156 -6703 2185 112 7 0 chr1 241113332 241113628 -1550725 + AluSx SINE Alu 1 298 -14 3978 266 103 28 chr1 241113628 241114924 -1549429 + L1M4 LINE L1 156 1558 -5301 358 242 77 0 chr1 241114907 241115059 -1549294 + L1M4 LINE L1 4143 4304 -2653 * 2338 68 0 16 chr1 241115062 241115369 -1548984 + AluY SINE Alu 1 302 -9 1528 180 14 27 chr1 241115371 241115666 -1548687 + AluSx SINE Alu 1 291 -11 2245 78 11 0 chr1 241115892 241116175 -1548178 + AluSc SINE Alu 1 286 -23 24 0 0 0 chr1 241116175 241116199 -1548154 + AT_rich Low_complexity Low_complexity 1 24 0 2308 45 56 7 chr1 241116205 241116493 -1547860 + AluY SINE Alu 1 302 -9 186 379 114 0 chr1 241117065 241117205 -1547148 - L2 LINE L2 -14 3258 3103 2214 115 3 3 chr1 241117296 241117608 -1546745 + AluSx SINE Alu 1 312 0 1768 58 0 0 chr1 241117947 241118154 -1546199 + AluSg SINE Alu 1 207 -103 364 168 84 63 chr1 241118256 241118351 -1546002 - MLT1J LTR MaLR -333 178 82 1368 113 0 0 chr1 241118374 241118560 -1545793 + AluSg/x SINE Alu 112 297 -15 903 147 8 0 chr1 241118646 241118775 -1545578 - FLAM_C SINE Alu -3 130 1 385 241 112 73 chr1 241118777 241119009 -1545344 + L1MC4 LINE L1 7771 8011 -31 2076 99 0 26 chr1 241119029 241119333 -1545020 + AluSc SINE Alu 1 296 -13 28 29 0 0 chr1 241119488 241119523 -1544830 + AT_rich Low_complexity Low_complexity 1 35 0 1233 226 62 134 chr1 241119567 241119581 -1544772 + MLT1G1 LTR MaLR 1 14 -581 1396 135 171 16 chr1 241119581 241119833 -1544520 - AluJo SINE Alu -11 291 1 1233 226 62 134 chr1 241119833 241119989 -1544364 + MLT1G1 LTR MaLR 14 180 -415 2531 62 3 0 chr1 241119989 241120296 -1544057 - AluY SINE Alu -3 308 1 1233 226 62 134 chr1 241120296 241120758 -1543595 + MLT1G1 LTR MaLR 180 588 -7 307 100 40 0 chr1 241120945 241120995 -1543358 + Alu SINE Alu 1 52 -250 2364 100 7 0 chr1 241121491 241121792 -1542561 - AluSx SINE Alu -9 303 1 768 171 8 0 chr1 241122763 241122886 -1541467 + AluJb SINE Alu 2 125 -187 2205 104 3 0 chr1 241122893 241123182 -1541171 + AluSx SINE Alu 1 290 -22 1881 130 10 17 chr1 241123676 241123976 -1540377 - AluSx SINE Alu -14 298 1 337 344 33 33 chr1 241125084 241125264 -1539089 - HERVS71 LTR ERV1 -3935 5043 4864 40 37 0 0 chr1 241125519 241125573 -1538780 + AT_rich Low_complexity Low_complexity 1 54 0 510 335 64 46 chr1 241126870 241127351 -1537002 - HERVS71 LTR ERV1 -1906 5850 4683 23 0 0 0 chr1 241127781 241127804 -1536549 + AT_rich Low_complexity Low_complexity 1 23 0 322 336 65 50 chr1 241128044 241128645 -1535708 - HERVS71 LTR ERV1 -3138 5042 3515 4521 141 44 15 chr1 241129091 241129199 -1535154 - Tigger1 DNA MER2_type -567 1851 1748 1467 178 76 7 chr1 241129199 241129475 -1534878 - AluJo SINE Alu -17 295 1 4521 141 44 15 chr1 241129475 241130156 -1534197 - Tigger1 DNA MER2_type -670 1748 1039 843 157 58 13 chr1 241130155 241130413 -1533940 - Tigger1 DNA MER2_type -1781 637 310 * 652 213 0 28 chr1 241130398 241130494 -1533859 - Tigger1 DNA MER2_type -2281 137 45 * 2520 59 3 0 chr1 241130494 241130797 -1533556 + AluY SINE Alu 1 304 -7 652 213 0 28 chr1 241130797 241130841 -1533512 - Tigger1 DNA MER2_type -2373 45 1 1959 105 14 14 chr1 241131084 241131217 -1533136 + AluSx SINE Alu 1 133 -179 2173 93 31 3 chr1 241131217 241131508 -1532845 + AluSx SINE Alu 2 300 -12 1959 105 14 14 chr1 241131508 241131668 -1532685 + AluSx SINE Alu 132 294 -18 30 0 0 0 chr1 241131668 241131698 -1532655 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr1 241131716 241131736 -1532617 + (TG)n Simple_repeat Simple_repeat 1 20 0 25 83 0 0 chr1 241132450 241132510 -1531843 + AT_rich Low_complexity Low_complexity 1 60 0 220 158 0 0 chr1 241134921 241134959 -1529394 + MIR SINE MIR 218 255 -7 2395 58 3 3 chr1 241136851 241137145 -1527208 - AluY SINE Alu -17 294 1 388 396 28 11 chr1 241137516 241137698 -1526655 - MIR3 SINE MIR -5 203 19 506 173 0 23 chr1 241138537 241138784 -1525569 + AluJo SINE Alu 1 291 -21 2215 84 0 32 chr1 241139056 241139364 -1524989 - AluSg SINE Alu -12 298 1 1369 94 17 0 chr1 241139574 241139755 -1524598 - AluSg SINE Alu -126 184 1 309 296 204 33 chr1 241139817 241139969 -1524384 + MIR SINE MIR 48 225 -37 2423 70 0 0 chr1 241140045 241140346 -1524007 + AluY SINE Alu 1 301 -10 2195 114 3 3 chr1 241143001 241143308 -1521045 + AluSx SINE Alu 1 307 -5 2477 74 3 3 chr1 241143646 241143957 -1520396 + AluY SINE Alu 1 311 0 630 130 90 0 chr1 241143970 241144070 -1520283 - FLAM_C SINE Alu -33 110 2 331 306 167 3 chr1 241144086 241144403 -1519950 + L1M4 LINE L1 2738 3106 -3040 330 336 8 8 chr1 241144665 241144793 -1519560 - MIR SINE MIR -130 132 5 1031 234 0 0 chr1 241146959 241147134 -1517219 + MER8 DNA MER2_type 1 175 -64 270 301 41 0 chr1 241147603 241147676 -1516677 - MER2 DNA MER2_type -1 344 269 858 160 0 8 chr1 241147679 241147810 -1516543 + FLAM_C SINE Alu 1 130 -3 2194 130 0 0 chr1 241147829 241148130 -1516223 + AluSx SINE Alu 7 307 -5 524 65 26 0 chr1 241148163 241148240 -1516113 - MER2 DNA MER2_type -135 210 132 1144 160 41 0 chr1 241148246 241148440 -1515913 + MER2 DNA MER2_type 141 342 -3 741 168 38 30 chr1 241148442 241148573 -1515780 - MER2 DNA MER2_type -213 132 1 1646 160 85 3 chr1 241149252 241149558 -1514795 + MER7A DNA MER2_type 18 346 0 2008 141 0 13 chr1 241149918 241150222 -1514131 - AluSg SINE Alu -10 300 1 2158 102 3 0 chr1 241150996 241151302 -1513051 - AluSg SINE Alu 0 307 1 296 253 50 10 chr1 241151613 241151712 -1512641 - L2 LINE L2 -1209 2105 2003 205 326 0 0 chr1 241151758 241151801 -1512552 - MIR SINE MIR -203 59 17 384 276 100 84 chr1 241151996 241152246 -1512107 - MLT1J LTR MaLR -257 254 1 2277 81 0 35 chr1 241152662 241152972 -1511381 - AluSg1 SINE Alu -10 299 1 192 235 118 0 chr1 241153072 241153123 -1511230 + MIR3 SINE MIR 104 160 -48 236 229 0 0 chr1 241153564 241153612 -1510741 - L1ME LINE L1 -597 5565 5518 396 260 71 0 chr1 241154411 241154538 -1509815 + MIR SINE MIR 54 189 -73 956 197 0 53 chr1 241154669 241154877 -1509476 - AluJb SINE Alu -8 304 108 201 39 0 0 chr1 241154877 241154903 -1509450 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1908 88 84 0 chr1 241154903 241155165 -1509188 - AluY SINE Alu -27 284 1 1873 142 10 7 chr1 241155167 241155462 -1508891 - AluJb SINE Alu -16 296 1 518 210 182 14 chr1 241155625 241155768 -1508585 + MER105 DNA DNA 2 168 -36 2227 105 0 3 chr1 241157418 241157714 -1506639 - AluSq SINE Alu -18 295 1 387 0 0 0 chr1 241157855 241157898 -1506455 + (TG)n Simple_repeat Simple_repeat 2 44 0 1421 198 12 4 chr1 241158563 241158821 -1505532 - AluJo SINE Alu -52 260 1 915 132 113 0 chr1 241158821 241158980 -1505373 + Tigger3(Golem) DNA MER2_type 2760 2936 -93 388 74 0 0 chr1 241159083 241159137 -1505216 - LTR13 LTR ERVK -953 54 1 834 80 0 140 chr1 241159137 241159287 -1505066 - AluSx SINE Alu -157 155 27 2198 95 7 0 chr1 241159809 241160094 -1504259 - AluSg SINE Alu -22 288 2 180 0 0 0 chr1 241160313 241160333 -1504020 + (TA)n Simple_repeat Simple_repeat 2 21 0 2366 70 3 0 chr1 241160333 241160618 -1503735 - AluSp SINE Alu -27 286 1 462 324 93 10 chr1 241160922 241161126 -1503227 - MIR SINE MIR -37 225 5 23 68 0 0 chr1 241161275 241161319 -1503034 + AT_rich Low_complexity Low_complexity 1 44 0 219 140 0 0 chr1 241161412 241161462 -1502891 + (A)n Simple_repeat Simple_repeat 1 50 0 418 229 8 34 chr1 241161731 241161849 -1502504 + L1MB1 LINE L1 6054 6168 0 412 334 121 25 chr1 241162079 241162516 -1501837 + L2 LINE L2 2835 3313 0 2481 36 0 0 chr1 241163779 241164086 -1500267 + AluY SINE Alu 1 307 0 344 120 0 0 chr1 241164223 241164273 -1500080 - MSTA LTR MaLR -378 50 1 229 294 47 0 chr1 241164307 241164392 -1499961 - L3 LINE CR1 -846 731 643 602 191 63 79 chr1 241164478 241164525 -1499828 - MER65B LTR ERV1 -345 186 140 2018 116 20 3 chr1 241164525 241164817 -1499536 - AluSg SINE Alu -12 298 2 602 191 63 79 chr1 241164817 241164958 -1499395 - MER65B LTR ERV1 -391 140 1 314 250 57 0 chr1 241165753 241165841 -1498512 - LTR16C LTR ERVL -51 440 348 370 280 133 0 chr1 241165987 241166137 -1498216 - MER5A DNA MER1_type -18 171 2 2449 63 3 29 chr1 241167155 241167471 -1496882 + AluY SINE Alu 1 308 -3 396 219 0 101 chr1 241167643 241167684 -1496669 - L1MB4 LINE L1 -9 6171 6127 2031 140 0 3 chr1 241167684 241167984 -1496369 - AluSx SINE Alu -13 299 1 396 219 0 101 chr1 241167984 241168061 -1496292 - L1MB4 LINE L1 -53 6127 6065 * 1664 225 77 3 chr1 241168059 241168695 -1495658 + L1M2 LINE L1 5020 5694 -606 2243 100 3 0 chr1 241169252 241169552 -1494801 + AluSp SINE Alu 1 301 -12 627 78 0 0 chr1 241169973 241170050 -1494303 + Alu SINE Alu 2 78 -233 281 269 21 21 chr1 241170050 241170191 -1494162 - L1M4 LINE L1 -1639 4507 4367 2432 73 0 3 chr1 241170203 241170503 -1493850 + AluY SINE Alu 1 299 -12 1202 213 0 20 chr1 241170515 241170759 -1493594 + AluJo SINE Alu 1 239 -73 2033 131 3 0 chr1 241170818 241171123 -1493230 + AluSx SINE Alu 1 306 0 1645 190 23 0 chr1 241171158 241171463 -1492890 + AluJb SINE Alu 1 312 0 1968 146 0 0 chr1 241171695 241171982 -1492371 + AluJb SINE Alu 1 287 -25 300 196 130 22 chr1 241172028 241172120 -1492233 - L2 LINE L2 -181 3132 3031 1713 202 130 7 chr1 241172331 241172747 -1491606 - MLT1C LTR MaLR 0 467 1 614 245 27 7 chr1 241173054 241173201 -1491152 - MIR SINE MIR -54 208 59 2296 116 0 3 chr1 241173266 241173576 -1490777 - AluSx SINE Alu -3 309 1 2153 134 0 0 chr1 241174330 241174636 -1489717 - AluSx SINE Alu -6 306 1 444 340 7 0 chr1 241174946 241175093 -1489260 - MIR SINE MIR -6 256 109 277 256 124 31 chr1 241175248 241175377 -1488976 - MIR SINE MIR -6 256 116 2220 132 0 0 chr1 241175571 241175875 -1488478 + AluSx SINE Alu 1 304 -8 815 214 0 71 chr1 241176559 241176741 -1487612 + FAM SINE Alu 1 169 -6 587 125 10 0 chr1 241176913 241177009 -1487344 + AluSg/x SINE Alu 205 301 -9 2430 85 3 3 chr1 241177157 241177464 -1486889 + AluSp SINE Alu 1 307 -6 315 181 129 17 chr1 241178308 241178424 -1485929 - L1MC4 LINE L1 0 8042 7914 227 247 152 76 chr1 241178489 241178845 -1485508 - L1MC5 LINE L1 -286 7675 7293 * 248 279 67 0 chr1 241178818 241178922 -1485431 - L1MC4a LINE L1 -397 7411 7301 716 224 64 6 chr1 241178985 241179141 -1485212 + MER20 DNA MER1_type 2 166 -53 2036 167 131 9 chr1 241179143 241179520 -1484833 - Tigger7 DNA MER2_type -2 2485 2156 1917 109 75 27 chr1 241179520 241179813 -1484540 - AluSg SINE Alu -3 307 1 348 111 0 0 chr1 241179820 241179883 -1484470 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2036 167 131 9 chr1 241179883 241179974 -1484379 - Tigger7 DNA MER2_type -336 2151 1 2232 86 0 35 chr1 241180027 241180341 -1484012 - AluY SINE Alu -8 303 1 226 226 19 0 chr1 241180344 241180397 -1483956 - L1MC5 LINE L1 -748 7213 7160 507 228 59 41 chr1 241180584 241180847 -1483506 - L1MC5 LINE L1 -936 7106 6742 22 0 0 0 chr1 241180958 241180980 -1483373 + AT_rich Low_complexity Low_complexity 1 22 0 297 257 29 0 chr1 241181722 241181792 -1482561 - L1ME3A LINE L1 -88 6082 6011 304 190 70 95 chr1 241181891 241181951 -1482402 - L1ME3A LINE L1 -219 5951 5891 1993 139 0 19 chr1 241181951 241182268 -1482085 - AluSq SINE Alu 0 313 3 304 190 70 95 chr1 241182268 241182288 -1482065 - L1ME3A LINE L1 -279 5891 5872 2476 61 3 0 chr1 241182288 241182584 -1481769 - AluY SINE Alu -14 297 1 304 190 70 95 chr1 241182584 241182660 -1481693 - L1ME3A LINE L1 -298 5872 5798 295 260 167 62 chr1 241182664 241182902 -1481451 - L1MEd LINE L1 -5157 962 750 2064 106 19 26 chr1 241182902 241183213 -1481140 - AluSc SINE Alu 0 309 1 295 260 167 62 chr1 241183213 241183357 -1480996 - L1MEd LINE L1 -5364 755 538 2163 94 31 7 chr1 241183357 241183645 -1480708 - AluSc SINE Alu -14 295 1 893 160 11 40 chr1 241184400 241184575 -1479778 - AluJo SINE Alu -21 291 122 408 272 165 69 chr1 241185719 241186065 -1478288 + L2 LINE L2 2402 2780 -534 237 277 108 12 chr1 241186217 241186300 -1478053 + MIR SINE MIR 12 102 -160 695 122 0 0 chr1 241186419 241186509 -1477844 - AluY SINE Alu -27 284 195 328 283 9 9 chr1 241186984 241187090 -1477263 + L1ME3A LINE L1 6065 6170 0 201 349 15 15 chr1 241187386 241187452 -1476901 - L2 LINE L2 -70 3202 3137 2318 85 7 0 chr1 241187732 241188026 -1476327 - AluSc SINE Alu -13 296 1 257 386 46 0 chr1 241188110 241188263 -1476090 - L2 LINE L2 -685 2629 2470 431 147 29 0 chr1 241188744 241188812 -1475541 - Tigger4(Zombi) DNA MER2_type 0 2731 2662 297 246 120 49 chr1 241189308 241189450 -1474903 + MIR SINE MIR 109 260 -2 862 99 0 0 chr1 241190428 241190539 -1473814 - FLAM_C SINE Alu -32 111 1 353 259 163 86 chr1 241191190 241191305 -1473048 + L1M2 LINE L1 444 549 -6300 252 0 0 0 chr1 241191305 241191333 -1473020 + (CCG)n Simple_repeat Simple_repeat 3 30 0 353 259 163 86 chr1 241191333 241191735 -1472618 + L1M2 LINE L1 549 948 -5901 24 32 0 0 chr1 241192060 241192091 -1472262 + GC_rich Low_complexity Low_complexity 1 31 0 679 117 10 0 chr1 241192273 241192376 -1471977 - AluSg/x SINE Alu -2 308 205 1816 136 13 33 chr1 241192761 241192928 -1471425 - AluJo SINE Alu -17 295 126 254 49 0 24 chr1 241192928 241192969 -1471384 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2321 75 0 0 chr1 241192969 241193248 -1471105 - AluSc SINE Alu -30 279 1 1816 136 13 33 chr1 241193248 241193380 -1470973 - AluJo SINE Alu -184 128 1 955 153 11 40 chr1 241193382 241193558 -1470795 - FAM SINE Alu -4 171 1 438 250 0 119 chr1 241193881 241194057 -1470296 + MIR3 SINE MIR 38 192 -16 1986 159 3 0 chr1 241194168 241194470 -1469883 - AluJb SINE Alu -9 303 1 207 0 0 0 chr1 241194538 241194561 -1469792 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 253 189 89 22 chr1 241195015 241195105 -1469248 + MER103 DNA DNA 8 103 -63 335 311 63 37 chr1 241195221 241195411 -1468942 + MIR SINE MIR 8 202 -60 406 74 19 0 chr1 241195582 241195636 -1468717 - MER34C LTR ERV1 -484 101 47 24 0 0 0 chr1 241195648 241195672 -1468681 + AT_rich Low_complexity Low_complexity 1 24 0 2162 98 0 51 chr1 241195672 241195988 -1468365 - AluSx SINE Alu -12 300 1 2669 46 0 0 chr1 241196278 241196582 -1467771 + AluY SINE Alu 1 304 -7 45 45 0 0 chr1 241196582 241196648 -1467705 + AT_rich Low_complexity Low_complexity 1 66 0 1506 108 33 0 chr1 241196982 241197194 -1467159 - AluSx SINE Alu -93 219 1 244 246 15 0 chr1 241197641 241197706 -1466647 - MIR3 SINE MIR -18 190 125 1997 147 3 6 chr1 241197769 241198081 -1466272 + AluJb SINE Alu 1 311 -1 582 151 11 0 chr1 241198082 241198175 -1466178 - MER34 LTR ERV1 0 542 449 606 178 0 54 chr1 241198175 241198304 -1466049 + FRAM SINE Alu 1 122 -54 235 147 0 0 chr1 241199864 241199898 -1464455 - Alu SINE Alu -134 169 136 2224 109 0 0 chr1 241199901 241200211 -1464142 - AluSx SINE Alu 0 310 1 2057 124 0 27 chr1 241200213 241200512 -1463841 - AluSc SINE Alu -18 291 1 2435 77 0 23 chr1 241200513 241200823 -1463530 - AluSg SINE Alu -7 303 1 23 54 0 0 chr1 241200890 241200927 -1463426 + AT_rich Low_complexity Low_complexity 1 37 0 252 136 288 15 chr1 241202336 241202402 -1461951 + L2 LINE L2 3228 3311 -2 1079 162 0 0 chr1 241202423 241202590 -1461763 - FRAM SINE Alu -4 172 6 833 131 0 62 chr1 241202681 241202811 -1461542 + FLAM_C SINE Alu 1 122 -21 2090 99 0 20 chr1 241203222 241203524 -1460829 + AluSc SINE Alu 12 307 -2 1960 134 10 19 chr1 241203526 241203867 -1460486 + AluSx SINE Alu 1 312 0 278 188 16 16 chr1 241204562 241204626 -1459727 + MIR3 SINE MIR 130 193 -15 1298 148 110 26 chr1 241204735 241204817 -1459536 - MER7A DNA MER2_type -2754 284 210 2036 96 126 36 chr1 241204817 241205151 -1459202 + THE1B LTR MaLR 1 364 0 1298 148 110 26 chr1 241205151 241205332 -1459021 - MER7A DNA MER2_type -2828 210 1 1291 121 0 6 chr1 241205871 241206053 -1458300 - AluSg/x SINE Alu -9 300 120 189 0 0 0 chr1 241206211 241206232 -1458121 + (A)n Simple_repeat Simple_repeat 1 21 0 2023 145 7 0 chr1 241206234 241206551 -1457802 + AluSx SINE Alu 1 319 0 189 171 0 0 chr1 241206827 241206862 -1457491 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr1 241207303 241207338 -1457015 + AT_rich Low_complexity Low_complexity 1 35 0 32 57 0 0 chr1 241207546 241207599 -1456754 + AT_rich Low_complexity Low_complexity 1 53 0 742 201 57 6 chr1 241208576 241208735 -1455618 + FRAM SINE Alu 1 165 -11 2007 171 93 13 chr1 241208737 241208904 -1455449 + MSTB LTR MaLR 1 153 -273 1495 161 135 0 chr1 241208904 241209171 -1455182 + AluJb SINE Alu 1 303 -9 2007 171 93 13 chr1 241209171 241209388 -1454965 + MSTB LTR MaLR 153 416 -10 2040 122 6 22 chr1 241209678 241209990 -1454363 + AluSq SINE Alu 1 307 -6 2429 59 0 16 chr1 241209996 241210303 -1454050 + AluY SINE Alu 1 302 -9 1037 177 9 37 chr1 241210305 241210520 -1453833 + AluSx SINE Alu 1 209 -103 1619 136 0 16 chr1 241210639 241210890 -1453463 - AluSq SINE Alu -66 247 1 251 228 0 0 chr1 241210895 241210952 -1453401 + Charlie5 DNA MER1_type 2568 2624 0 297 0 0 0 chr1 241211078 241211111 -1453242 + (TG)n Simple_repeat Simple_repeat 2 34 0 2355 66 30 3 chr1 241211930 241212231 -1452122 - AluSc SINE Alu 0 309 1 1183 268 60 16 chr1 241212246 241212627 -1451726 - MER93a LTR ERV1 -4 398 1 2291 91 3 31 chr1 241212806 241213124 -1451229 - AluSg SINE Alu -1 309 1 2345 88 0 7 chr1 241213206 241213511 -1450842 - AluSc SINE Alu -6 303 1 452 226 68 8 chr1 241213600 241213733 -1450620 - L1 LINE L1 -1055 5091 4951 266 52 52 17 chr1 241213733 241213791 -1450562 + T-rich Low_complexity Low_complexity 1 60 0 1133 148 4 98 chr1 241213809 241214045 -1450308 - AluJb SINE Alu -98 214 1 5850 176 20 14 chr1 241214046 241215223 -1449130 - L1 LINE L1 -1183 4963 3780 2303 93 10 0 chr1 241215223 241215523 -1448830 - AluSx SINE Alu -9 303 1 444 209 124 90 chr1 241215561 241215795 -1448558 - MER31-int LTR ERV1 -2959 1977 1736 4425 167 38 6 chr1 241215838 241216653 -1447700 - L1PA15 LINE L1 0 6165 5325 2140 118 10 0 chr1 241216662 241216951 -1447402 - AluSx SINE Alu -20 292 1 2176 245 24 36 chr1 241216951 241217695 -1446658 - L1P LINE L1 -3012 3134 2400 292 151 19 0 chr1 241217796 241217849 -1446504 - L1M3 LINE L1 -442 5729 5676 1040 248 26 10 chr1 241217868 241218178 -1446175 - L1 LINE L1 -1311 4835 4521 451 281 13 0 chr1 241218187 241218340 -1446013 - L1 LINE L1 -3263 2883 2729 2203 116 0 0 chr1 241218360 241218652 -1445701 - AluSx SINE Alu -20 292 1 8545 41 9 0 chr1 241219370 241220330 -1444023 - LTR5 LTR ERVK 0 969 1 1877 168 0 10 chr1 241221090 241221393 -1442960 - AluJo SINE Alu -12 300 1 14458 88 3 6 chr1 241221642 241223149 -1441204 + L1P LINE L1 2739 4240 -1906 2550 70 0 6 chr1 241223149 241223462 -1440891 + AluY SINE Alu 1 311 0 14458 88 3 6 chr1 241223462 241223962 -1440391 + L1P LINE L1 4240 4740 -1406 1454 104 31 14 chr1 241223965 241224187 -1440166 - L1PA10 LINE L1 -5 6163 5938 876 236 99 73 chr1 241224437 241224692 -1439661 - HERVL74 LTR ERVL -4224 1461 1191 6651 23 3 272 chr1 241224692 241226110 -1438243 + SVA Other Other 11 1047 -339 876 236 99 73 chr1 241226110 241226239 -1438114 - HERVL74 LTR ERVL -4494 1191 1067 2232 93 10 13 chr1 241226395 241226696 -1437657 + AluY SINE Alu 1 300 -11 469 219 65 53 chr1 241226727 241226762 -1437591 - HERVL74 LTR ERVL -2873 683 650 1749 258 40 2 chr1 241226762 241227211 -1437142 - MER70A LTR ERVL -4 468 3 469 219 65 53 chr1 241227211 241227344 -1437009 - HERVL74 LTR ERVL -2906 650 513 898 290 33 16 chr1 241228338 241228641 -1435712 - LTR53 LTR ERVL -16 503 196 180 0 0 0 chr1 241228955 241228975 -1435378 + (TA)n Simple_repeat Simple_repeat 1 20 0 2240 105 0 7 chr1 241228982 241229277 -1435076 - AluSp SINE Alu -20 293 1 1530 209 0 14 chr1 241229325 241229621 -1434732 + AluJb SINE Alu 1 292 -20 2563 77 0 0 chr1 241229623 241229934 -1434419 + AluY SINE Alu 1 311 0 5109 147 2 10 chr1 241230139 241231285 -1433068 - L1PA15 LINE L1 0 6165 5003 207 0 0 0 chr1 241231285 241231308 -1433045 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2347 64 7 0 chr1 241231308 241231588 -1432765 - AluY SINE Alu -29 282 1 5262 116 26 10 chr1 241231632 241232448 -1431905 - L1MA2 LINE L1 0 6304 5476 2800 120 33 25 chr1 241232453 241232937 -1431416 - L1MA1 LINE L1 -1 6301 5814 2512 45 3 0 chr1 241233069 241233361 -1430992 - AluY SINE Alu -18 293 1 12112 72 28 2 chr1 241233361 241234935 -1429418 - HERVK14C LTR ERVK -18 7399 5785 3135 49 3 0 chr1 241234952 241235322 -1429031 - HERVK14C LTR ERVK -1758 5659 5289 * 3553 71 14 32 chr1 241235303 241235797 -1428556 - HERVK14C LTR ERVK -4863 2554 2070 495 151 0 0 chr1 241235823 241235896 -1428457 - HERVK14C LTR ERVK -5438 1979 1907 12745 96 22 1 chr1 241235896 241237635 -1426718 - HERVK14C LTR ERVK -5640 1777 3 523 152 0 71 chr1 241237635 241237747 -1426606 + AluJo SINE Alu 81 184 -128 486 99 0 14 chr1 241237747 241237818 -1426535 + MER4A-int LTR ERV1 6527 6596 -2 545 149 21 11 chr1 241237826 241237920 -1426433 + MER4A LTR ERV1 4 98 -566 1576 116 6 79 chr1 241237920 241238149 -1426204 + MER4A LTR ERV1 261 518 -146 1358 202 108 58 chr1 241238149 241238630 -1425723 + LTR10B LTR ERV1 1 505 0 1576 116 6 79 chr1 241238630 241238735 -1425618 + MER4A LTR ERV1 518 629 -35 348 125 18 0 chr1 241238730 241238786 -1425567 + LTR8 LTR ERV1 520 576 -115 * 371 136 0 0 chr1 241238790 241238849 -1425504 + Alu SINE Alu 243 301 0 * 950 108 0 0 chr1 241238844 241238973 -1425380 + LTR8 LTR ERV1 563 691 0 180 0 0 0 chr1 241239000 241239020 -1425333 + (TA)n Simple_repeat Simple_repeat 1 20 0 192 40 0 0 chr1 241239210 241239235 -1425118 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 3961 172 55 24 chr1 241239236 241239592 -1424761 + L1P4 LINE L1 4486 4830 -1335 2462 71 0 0 chr1 241239592 241239889 -1424464 - AluY SINE Alu -14 297 1 3961 172 55 24 chr1 241239889 241240521 -1423832 + L1P4 LINE L1 4830 5493 -672 1731 176 7 3 chr1 241240521 241240816 -1423537 + AluSx SINE Alu 3 298 -14 235 291 29 10 chr1 241240983 241241086 -1423267 + MER72 LTR ERV1 377 481 -241 273 221 90 75 chr1 241241161 241241332 -1423021 + LTR45B LTR ERV1 323 525 0 405 272 0 0 chr1 241241342 241241434 -1422919 + HERVL40 LTR ERVL 2236 2327 -3203 758 305 75 0 chr1 241241436 241241728 -1422625 + HERVL40 LTR ERVL 2577 2890 -2640 271 293 26 78 chr1 241241875 241241991 -1422362 + HERVL40 LTR ERVL 3065 3174 -2356 2239 90 28 0 chr1 241242122 241242411 -1421942 + AluSq SINE Alu 1 297 -16 531 311 80 1 chr1 241242486 241242787 -1421566 + HERVL40 LTR ERVL 3532 3880 -1650 2467 82 0 0 chr1 241242971 241243277 -1421076 + AluSg SINE Alu 1 306 -4 423 252 19 0 chr1 241243362 241243469 -1420884 - HERVL40 LTR ERVL -2723 2807 2699 361 248 20 10 chr1 241243472 241243573 -1420780 - HERVL40 LTR ERVL -2735 2795 2694 260 284 84 0 chr1 241243594 241243689 -1420664 + HERVL40 LTR ERVL 4191 4293 -1237 566 321 28 28 chr1 241243697 241243915 -1420438 + HERVL40 LTR ERVL 4439 4656 -874 799 279 104 17 chr1 241246577 241246932 -1417421 - MER21B LTR ERV1 -62 801 416 1325 232 161 16 chr1 241247007 241247498 -1416855 + MER92B LTR ERV1 66 627 -9 2042 163 15 0 chr1 241247502 241247834 -1416519 - MER1B DNA MER1_type 0 337 1 2180 117 19 30 chr1 241248396 241248764 -1415589 + THE1B LTR MaLR 1 364 0 2556 64 0 3 chr1 241249206 241249504 -1414849 - AluY SINE Alu -14 297 1 307 188 14 14 chr1 241249521 241249590 -1414763 + MER92B LTR ERV1 490 558 -78 2222 126 0 0 chr1 241249607 241249909 -1414444 - AluSx SINE Alu -10 302 1 284 151 38 0 chr1 241250773 241250826 -1413527 + FRAM/FAM SINE Alu 31 85 -90 442 284 89 41 chr1 241250910 241251181 -1413172 + MER93b LTR ERV1 90 373 0 383 220 184 0 chr1 241252154 241252295 -1412058 - Charlie5 DNA MER1_type 0 2623 2457 667 252 19 19 chr1 241252298 241252504 -1411849 - LTR7 LTR ERV1 -7 443 238 355 274 58 29 chr1 241252908 241253116 -1411237 - L1MC5 LINE L1 -742 7219 7006 252 269 64 58 chr1 241253167 241253236 -1411117 - L1MC4 LINE L1 -993 7049 6982 2399 86 0 7 chr1 241253236 241253540 -1410813 - AluSx SINE Alu -10 302 1 252 269 64 58 chr1 241253540 241253626 -1410727 - L1MC4 LINE L1 -1060 6982 6893 322 282 117 74 chr1 241253738 241253853 -1410500 - L1MEc LINE L1 -4646 1664 1555 2743 35 0 0 chr1 241253853 241254164 -1410189 - AluY SINE Alu 0 311 1 322 282 117 74 chr1 241254164 241254374 -1409979 - L1MEc LINE L1 -4755 1555 1325 528 340 88 58 chr1 241254381 241254916 -1409437 - L1MEc LINE L1 -4863 1256 706 3122 59 9 9 chr1 241254996 241255421 -1408932 - L1PA7 LINE L1 -4 6150 5726 265 232 239 26 chr1 241255426 241255581 -1408772 + L1ME1 LINE L1 5787 5977 -187 5760 142 4 2 chr1 241255600 241256576 -1407777 - L1P LINE L1 -1517 4629 3652 3291 152 53 22 chr1 241256569 241256814 -1407539 + L1P LINE L1 4642 4878 -1268 * 1982 133 13 7 chr1 241256814 241257114 -1407239 + AluSx SINE Alu 1 302 -10 3291 152 53 22 chr1 241257114 241257560 -1406793 + L1P LINE L1 4878 5355 -791 2861 98 2 2 chr1 241257561 241257968 -1406385 - L1PA10 LINE L1 -16 6152 5746 668 273 164 11 chr1 241259215 241259501 -1404852 - MER58B DNA MER1_type -11 330 1 2269 110 7 10 chr1 241259528 241259837 -1404516 + AluSq SINE Alu 2 309 -4 1957 100 23 32 chr1 241264045 241264354 -1399999 - AluSp SINE Alu -6 307 2 363 44 0 0 chr1 241264354 241264399 -1399954 + (TA)n Simple_repeat Simple_repeat 1 45 0 576 0 0 0 chr1 241264506 241264570 -1399783 + (GA)n Simple_repeat Simple_repeat 2 65 0 1077 67 0 54 chr1 241264570 241264719 -1399634 - AluSg/x SINE Alu -39 271 131 2079 116 3 20 chr1 241264720 241265021 -1399332 - AluSg SINE Alu -14 296 1 832 205 43 64 chr1 241265022 241265256 -1399097 + LTR52 LTR ERVL 75 303 -118 392 278 208 6 chr1 241265306 241265479 -1398874 - L1MC4a LINE L1 -1889 5919 5712 21 36 0 0 chr1 241265542 241265570 -1398783 + AT_rich Low_complexity Low_complexity 1 28 0 184 98 24 24 chr1 241265570 241265611 -1398742 + (CA)n Simple_repeat Simple_repeat 2 42 0 1503 176 7 40 chr1 241265617 241265895 -1398458 - AluJo SINE Alu -31 281 13 824 288 65 19 chr1 241265906 241266232 -1398121 + L1M4 LINE L1 2940 3249 -2897 7917 100 50 22 chr1 241266232 241266546 -1397807 + HSMAR1 DNA Mariner 3 307 -980 2501 70 3 0 chr1 241266546 241266846 -1397507 + AluSg SINE Alu 1 301 -9 7917 100 50 22 chr1 241266846 241267676 -1396677 + HSMAR1 DNA Mariner 307 1187 -100 2432 92 0 0 chr1 241267676 241267970 -1396383 - AluSg SINE Alu -16 294 1 7917 100 50 22 chr1 241267970 241268074 -1396279 + HSMAR1 DNA Mariner 1187 1287 0 824 288 65 19 chr1 241268074 241268288 -1396065 + L1M4 LINE L1 3249 3505 -2641 1212 269 101 25 chr1 241268316 241268989 -1395364 - LTR52-int LTR ERVL -2150 1406 782 2049 224 39 11 chr1 241269018 241269477 -1394876 - MER70A LTR ERVL 0 472 1 481 264 8 0 chr1 241270541 241270670 -1393683 - LTR53 LTR ERVL 0 519 390 309 209 96 61 chr1 241270697 241270812 -1393541 - LTR53 LTR ERVL -204 315 197 2335 104 0 7 chr1 241271321 241271628 -1392725 + AluSg SINE Alu 2 306 -4 2342 81 11 0 chr1 241272404 241272688 -1391665 - AluSc SINE Alu -22 287 1 1805 113 0 0 chr1 241272697 241272927 -1391426 - AluSc SINE Alu -24 285 56 855 117 6 151 chr1 241272997 241273017 -1391336 - AluJb SINE Alu -159 153 132 2499 62 0 0 chr1 241273017 241273329 -1391024 - AluY SINE Alu 0 311 2 855 117 6 151 chr1 241273329 241273487 -1390866 - AluJb SINE Alu -180 132 1 1040 279 64 8 chr1 241275483 241275841 -1388512 + MER68 LTR ERV1 1 378 -184 2380 88 10 3 chr1 241276398 241276706 -1387647 + AluSx SINE Alu 1 310 -2 435 259 27 41 chr1 241276706 241276843 -1387510 + MER93a LTR ERV1 242 378 -24 23 0 0 0 chr1 241277072 241277095 -1387258 + GC_rich Low_complexity Low_complexity 1 23 0 3721 91 57 0 chr1 241277897 241278445 -1385908 + LTR14C LTR ERVK 4 582 -5 418 134 24 12 chr1 241278451 241278533 -1385820 - FLAM_A SINE Alu -59 83 1 580 274 80 19 chr1 241280794 241281006 -1383347 + MER58B DNA MER1_type 94 318 -23 1460 139 19 35 chr1 241286512 241286605 -1377748 + AluJb SINE Alu 39 132 -180 2195 60 0 49 chr1 241286605 241286890 -1377463 + AluY SINE Alu 27 297 -14 1460 139 19 35 chr1 241286890 241287054 -1377299 + AluJb SINE Alu 132 292 -20 22 0 0 0 chr1 241287261 241287283 -1377070 + AT_rich Low_complexity Low_complexity 1 22 0 2102 136 3 3 chr1 241287466 241287768 -1376585 - AluSx SINE Alu -8 304 3 256 295 0 39 chr1 241288049 241288127 -1376226 - MIR SINE MIR -6 256 182 470 71 0 222 chr1 241288275 241288401 -1375952 + L1P4 LINE L1 5717 5814 -351 673 227 73 13 chr1 241288401 241288551 -1375802 - FAM SINE Alu -16 159 1 324 270 35 98 chr1 241288698 241288990 -1375363 + MLT1J LTR MaLR 136 493 -122 2522 60 3 0 chr1 241289041 241289339 -1375014 - AluY SINE Alu -12 299 1 225 237 82 59 chr1 241289594 241289729 -1374624 + MIR3 SINE MIR 9 146 -62 371 182 15 0 chr1 241289735 241289801 -1374552 + MLT1H LTR MaLR 9 75 -474 1611 23 0 0 chr1 241289801 241289972 -1374381 - AluY SINE Alu -140 171 1 2766 177 52 48 chr1 241289991 241290053 -1374300 - L1MB7 LINE L1 -9 6175 6115 2274 103 3 0 chr1 241290053 241290345 -1374008 - AluSg SINE Alu -17 293 1 2766 177 52 48 chr1 241290345 241290641 -1373712 - L1MB7 LINE L1 -69 6115 5822 1856 131 16 33 chr1 241290641 241290947 -1373406 - AluJb SINE Alu -11 301 1 2766 177 52 48 chr1 241290947 241291276 -1373077 - L1MB7 LINE L1 -362 5822 5484 1636 107 54 0 chr1 241291277 241291519 -1372834 - AluSg SINE Alu 0 310 56 249 219 0 0 chr1 241291557 241291621 -1372732 - L1MB7 LINE L1 -696 5488 5425 * 260 153 0 34 chr1 241291613 241291672 -1372681 - L1MB8 LINE L1 0 6178 6122 1067 92 8 0 chr1 241291828 241291959 -1372394 + AluSg SINE Alu 3 134 -176 1849 186 73 36 chr1 241292674 241293115 -1371238 + LTR2B LTR ERV1 34 490 0 2144 103 52 3 chr1 241295136 241295427 -1368926 + AluSg SINE Alu 1 305 -5 22164 151 31 26 chr1 241295429 241296897 -1367456 + L1P3 LINE L1 65 1525 -4936 2150 186 94 22 chr1 241296897 241297354 -1366999 + LTR2B LTR ERV1 1 490 0 22164 151 31 26 chr1 241297354 241297991 -1366362 + L1P3 LINE L1 1525 2158 -4303 2249 116 3 0 chr1 241297991 241298293 -1366060 - AluSx SINE Alu -9 303 1 22164 151 31 26 chr1 241298293 241301004 -1363349 + L1P3 LINE L1 2158 4973 -1488 2082 145 3 0 chr1 241301004 241301300 -1363053 + AluSx SINE Alu 1 297 -15 22164 151 31 26 chr1 241301300 241301699 -1362654 + L1P3 LINE L1 4973 5369 -1092 972 130 0 0 chr1 241301701 241301832 -1362521 + AluSg SINE Alu 1 131 -179 6811 67 14 27 chr1 241301852 241302951 -1361402 + L1PA8A LINE L1 5042 6131 0 612 272 28 0 chr1 241302988 241303168 -1361185 + L1MCa LINE L1 144 328 -6098 326 154 0 0 chr1 241303173 241303225 -1361128 + MER4A LTR ERV1 47 98 -566 * 1781 128 160 75 chr1 241303221 241303597 -1360756 + MER4A LTR ERV1 257 664 0 8773 187 31 14 chr1 241303597 241306024 -1358329 - L1PA12 LINE L1 -3739 3845 1543 570 321 28 28 chr1 241308469 241308687 -1355666 - HERVL40 LTR ERVL -874 4656 4439 258 284 84 0 chr1 241308695 241308790 -1355563 - HERVL40 LTR ERVL -1237 4293 4191 358 248 20 10 chr1 241308811 241308912 -1355441 + HERVL40 LTR ERVL 2694 2795 -2735 422 252 19 0 chr1 241308915 241309022 -1355331 + HERVL40 LTR ERVL 2699 2807 -2723 2442 82 0 0 chr1 241309107 241309413 -1354940 - AluSg SINE Alu -4 306 1 537 232 16 0 chr1 241309597 241309722 -1354631 - HERVL40 LTR ERVL -1650 3880 3754 292 284 12 0 chr1 241309817 241309898 -1354455 - HERVL40 LTR ERVL -1917 3613 3532 2219 90 28 0 chr1 241309973 241310262 -1354091 - AluSq SINE Alu -16 297 1 265 293 26 78 chr1 241310393 241310509 -1353844 - HERVL40 LTR ERVL -2356 3174 3065 766 305 75 0 chr1 241310656 241310948 -1353405 - HERVL40 LTR ERVL -2640 2890 2577 412 281 0 0 chr1 241310946 241311042 -1353311 - HERVL40 LTR ERVL -3199 2331 2236 * 274 221 90 75 chr1 241311052 241311223 -1353130 - LTR45B LTR ERV1 0 525 323 235 291 29 10 chr1 241311298 241311401 -1352952 - MER72 LTR ERV1 -241 481 377 2344 88 0 0 chr1 241311568 241311864 -1352489 - AluSg SINE Alu -14 296 1 331 358 36 6 chr1 241311895 241312060 -1352293 - HERVL40 LTR ERVL -3300 2230 2061 361 320 0 61 chr1 241312297 241312444 -1351909 - HERVL40 LTR ERVL -4359 1171 1034 1011 255 82 76 chr1 241312736 241313018 -1351335 - LTR40a LTR ERVL 0 519 231 2457 64 0 32 chr1 241313018 241313332 -1351021 + AluY SINE Alu 1 304 -7 1011 255 82 76 chr1 241313332 241313563 -1350790 - LTR40a LTR ERVL -288 231 3 2741 178 44 11 chr1 241313589 241314120 -1350233 + L1MA9 LINE L1 5542 6093 -219 1175 237 30 48 chr1 241314120 241314492 -1349861 - MLT1A1 LTR MaLR 0 365 1 2741 178 44 11 chr1 241314492 241314510 -1349843 + L1MA9 LINE L1 6093 6109 -203 25 65 0 0 chr1 241314571 241314617 -1349736 + AT_rich Low_complexity Low_complexity 1 46 0 29 43 0 43 chr1 241315184 241315253 -1349100 + AT_rich Low_complexity Low_complexity 1 66 0 1006 271 86 47 chr1 241315314 241315537 -1348816 + L1ME3A LINE L1 5258 5471 -699 2653 37 0 0 chr1 241315537 241315835 -1348518 + AluY SINE Alu 1 298 -13 1006 271 86 47 chr1 241315835 241316357 -1347996 + L1ME3A LINE L1 5471 6032 -138 235 261 17 17 chr1 241316626 241316745 -1347608 + A-rich Low_complexity Low_complexity 1 119 0 2108 81 0 0 chr1 241317226 241317485 -1346868 + AluY SINE Alu 37 295 -16 435 283 120 22 chr1 241317638 241317822 -1346531 - MIR SINE MIR -60 202 1 2090 134 38 40 chr1 241318472 241318845 -1345508 + THE1C LTR MaLR 2 373 -2 902 247 23 70 chr1 241318910 241319054 -1345299 + L1M4 LINE L1 3708 3857 -2289 799 179 0 0 chr1 241319054 241319171 -1345182 + FLAM_C SINE Alu 1 117 -16 902 247 23 70 chr1 241319171 241319423 -1344930 + L1M4 LINE L1 3857 4085 -2061 43 47 0 0 chr1 241319688 241319752 -1344601 + AT_rich Low_complexity Low_complexity 1 64 0 2410 75 7 0 chr1 241319917 241320212 -1344141 + AluY SINE Alu 1 297 -14 453 281 100 9 chr1 241321642 241321852 -1342501 + L1M4 LINE L1 3833 4061 -2085 1419 214 0 43 chr1 241321919 241322218 -1342135 + AluJo SINE Alu 1 286 -26 318 26 0 0 chr1 241322420 241322459 -1341894 + (CA)n Simple_repeat Simple_repeat 2 40 0 2224 105 10 13 chr1 241324600 241324914 -1339439 - AluSq SINE Alu 0 313 1 988 279 59 31 chr1 241325436 241325827 -1338526 + MER68 LTR ERV1 10 411 -151 188 0 74 0 chr1 241326230 241326257 -1338096 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1953 111 25 11 chr1 241326262 241326542 -1337811 - AluSq SINE Alu -29 284 1 583 232 43 0 chr1 241327774 241327912 -1336441 - LTR52-int LTR ERVL -3400 156 13 690 296 34 28 chr1 241327954 241328275 -1336078 - LTR52 LTR ERVL -91 330 8 4195 153 28 10 chr1 241329838 241330524 -1333829 + L1PA15 LINE L1 5466 6163 -2 613 268 122 11 chr1 241330539 241330826 -1333527 + L1MCa LINE L1 79 397 -6029 2162 179 81 5 chr1 241330827 241331223 -1333130 + MSTB LTR MaLR 1 426 0 5777 211 50 4 chr1 241331224 241332426 -1331927 + MSTB-int LTR MaLR 2 1258 -393 3621 137 11 6 chr1 241332408 241332947 -1331406 - THE1C-int LTR MaLR -198 1382 841 * 1106 152 0 0 chr1 241332947 241333112 -1331241 - THE1C-int LTR MaLR -575 1005 841 6516 122 12 44 chr1 241333112 241334150 -1330203 - THE1C-int LTR MaLR -575 1005 1 1206 122 39 53 chr1 241334150 241334450 -1329903 - THE1C LTR MaLR 0 375 1 14320 147 40 37 chr1 241334455 241334650 -1329703 - L1PBa LINE L1 -2661 4201 4008 1871 124 116 0 chr1 241334650 241334917 -1329436 - AluSg SINE Alu -2 298 1 14320 147 40 37 chr1 241334917 241336021 -1328332 - L1PBa LINE L1 -2854 4008 2909 2336 109 0 0 chr1 241336021 241336323 -1328030 - AluSg SINE Alu -6 304 3 14320 147 40 37 chr1 241336323 241336578 -1327775 - L1PBa LINE L1 -3953 2909 2656 1703 52 0 0 chr1 241336578 241336771 -1327582 + AluY SINE Alu 1 193 -118 437 50 0 0 chr1 241336771 241336831 -1327522 + AluY SINE Alu 248 307 -4 14320 147 40 37 chr1 241336831 241338903 -1325450 - L1PBa LINE L1 -4205 2657 496 2190 73 3 14 chr1 241338903 241339216 -1325137 + AluY SINE Alu 1 310 0 5200 209 55 1 chr1 241339323 241340348 -1324005 + L1M1 LINE L1 14 1093 -6472 569 152 0 0 chr1 241340376 241340481 -1323872 + L1M1 LINE L1 3334 3438 -4127 2472 156 135 53 chr1 241340481 241341180 -1323173 + LTR25 LTR ERV1 3 794 0 3444 218 35 31 chr1 241341227 241342169 -1322184 + L1M1 LINE L1 3560 4505 -3060 617 141 0 0 chr1 241342172 241342257 -1322096 + AluSg SINE Alu 2 86 -224 813 114 13 27 chr1 241342259 241342408 -1321945 + L1MA3 LINE L1 4850 4996 -1150 6021 145 27 14 chr1 241342575 241343887 -1320466 + L1MA3 LINE L1 4976 6305 0 3021 263 132 26 chr1 241343913 241344903 -1319450 + L1M4 LINE L1 2777 3661 -2485 2446 45 0 17 chr1 241344903 241345195 -1319158 + AluY SINE Alu 1 287 -24 3021 263 132 26 chr1 241345195 241346232 -1318121 + L1M4 LINE L1 3661 5019 -1127 838 211 57 6 chr1 241347008 241347187 -1317166 + MSTB LTR MaLR 3 190 -236 2138 119 7 0 chr1 241347197 241347490 -1316863 + AluSx SINE Alu 1 295 -17 1208 183 53 57 chr1 241347594 241347840 -1316513 - AluJo SINE Alu -53 259 15 394 232 57 22 chr1 241347931 241348110 -1316243 - L1M3c LINE L1 -4916 1397 809 438 298 13 6 chr1 241348170 241348328 -1316025 - L1M4c LINE L1 -4855 1181 1023 290 262 41 8 chr1 241348363 241348485 -1315868 - L1M4c LINE L1 -4911 1044 919 408 20 0 0 chr1 241348485 241348534 -1315819 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1124 266 82 23 chr1 241350523 241351059 -1313294 - L1M4 LINE L1 -1314 4832 4235 2282 85 0 0 chr1 241351059 241351391 -1312962 - AluY SINE Alu 0 332 1 1124 266 82 23 chr1 241351391 241351624 -1312729 - L1M4 LINE L1 -1911 4235 4017 1242 209 4 17 chr1 241351636 241351875 -1312478 - AluJo SINE Alu -76 236 1 313 301 97 25 chr1 241352026 241352305 -1312048 - L1M4 LINE L1 -2310 3836 3538 21 0 0 0 chr1 241352919 241352940 -1311413 + AT_rich Low_complexity Low_complexity 1 21 0 1055 163 135 28 chr1 241352940 241353222 -1311131 - L1MA7 LINE L1 0 6291 5980 2350 52 31 3 chr1 241353698 241353989 -1310364 - AluY SINE Alu -12 299 1 180 0 0 0 chr1 241357653 241357673 -1306680 + (TA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr1 241357772 241357792 -1306561 + (A)n Simple_repeat Simple_repeat 1 20 0 2011 145 0 3 chr1 241357793 241358097 -1306256 + AluSg SINE Alu 1 303 -7 2300 89 3 3 chr1 241358183 241358476 -1305877 + AluSp SINE Alu 1 293 -20 23 0 0 0 chr1 241358787 241358810 -1305543 + AT_rich Low_complexity Low_complexity 1 23 0 2315 96 3 0 chr1 241358904 241359196 -1305157 + AluSg SINE Alu 1 293 -17 979 245 110 11 chr1 241360319 241360601 -1303752 - AluJo SINE Alu -2 310 1 383 254 22 87 chr1 241361091 241361276 -1303077 - MLT1D LTR MaLR -330 175 3 272 233 11 22 chr1 241362552 241362642 -1301711 - MER53 DNA DNA -98 91 3 296 39 0 4 chr1 241363266 241363310 -1301043 + L1PA10 LINE L1 6023 6064 -104 908 204 63 2 chr1 241363310 241363544 -1300809 - MER52A LTR ERV1 -1267 488 180 636 173 4 43 chr1 241364013 241364290 -1300063 + (TA)n Simple_repeat Simple_repeat 1 266 0 2565 49 0 3 chr1 241365587 241365892 -1298461 + AluY SINE Alu 1 304 -7 281 250 66 52 chr1 241366360 241366496 -1297857 + MIR3 SINE MIR 9 146 -62 1543 264 53 0 chr1 241366504 241366940 -1297413 + MLT1H LTR MaLR 11 469 -80 898 243 55 13 chr1 241367588 241367897 -1296456 + MER33 DNA MER1_type 1 322 -2 23 86 0 0 chr1 241367986 241368044 -1296309 + AT_rich Low_complexity Low_complexity 1 58 0 459 218 67 42 chr1 241368841 241369006 -1295347 - MER93a LTR ERV1 0 402 234 357 87 261 0 chr1 241369040 241369109 -1295244 - FLAM_C SINE Alu -22 111 25 1760 173 75 36 chr1 241369346 241369786 -1294567 + LTR2B LTR ERV1 34 490 0 35 24 0 0 chr1 241371278 241371320 -1293033 + AT_rich Low_complexity Low_complexity 1 42 0 5133 105 60 15 chr1 241371321 241371759 -1292594 - L1PB2 LINE L1 -5 6146 5729 2101 122 0 22 chr1 241371759 241372070 -1292283 - AluSx SINE Alu -8 304 1 5133 105 60 15 chr1 241372070 241372677 -1291676 - L1PB2 LINE L1 -422 5729 5063 893 263 64 52 chr1 241373016 241373438 -1290915 - L1 LINE L1 -1993 4153 3727 300 287 119 0 chr1 241373439 241373540 -1290813 - L1 LINE L1 -2370 3776 3664 377 257 22 7 chr1 241373542 241373678 -1290675 - L1 LINE L1 -2644 3502 3365 552 65 0 0 chr1 241373800 241373877 -1290476 + L1P4 LINE L1 5715 5791 -374 10351 182 83 70 chr1 241373878 241374101 -1290252 - L1P4 LINE L1 -446 5719 5500 180 0 0 0 chr1 241374101 241374121 -1290232 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1772 183 0 3 chr1 241374124 241374419 -1289934 - AluJb SINE Alu -16 296 3 10351 182 83 70 chr1 241374419 241375051 -1289302 - L1P4 LINE L1 -666 5499 4877 2420 71 0 0 chr1 241375051 241375348 -1289005 + AluY SINE Alu 1 297 -14 10351 182 83 70 chr1 241375348 241377753 -1286600 - L1P4 LINE L1 -1288 4877 2296 667 150 26 0 chr1 241377753 241377866 -1286487 - Tigger3(Golem) DNA MER2_type -40 2989 2874 10351 182 83 70 chr1 241377866 241378342 -1286011 - L1P4 LINE L1 -3869 2296 1828 1239 256 12 35 chr1 241379475 241379877 -1284476 - MER68 LTR ERV1 -169 393 1 2399 101 0 0 chr1 241380033 241380340 -1284013 + AluSc SINE Alu 1 307 -2 757 235 110 59 chr1 241380774 241381183 -1283170 - MSTB1 LTR MaLR -2 430 1 2069 138 3 0 chr1 241381388 241381685 -1282668 + AluSp SINE Alu 1 298 -15 1223 164 52 0 chr1 241381806 241382037 -1282316 - MSTB1 LTR MaLR 0 432 190 2340 106 0 0 chr1 241382041 241382344 -1282009 - AluSx SINE Alu -4 308 6 1232 181 11 21 chr1 241382349 241382631 -1281722 - L1 LINE L1 -858 5288 5010 22 70 0 0 chr1 241382881 241382924 -1281429 + AT_rich Low_complexity Low_complexity 1 43 0 969 162 0 0 chr1 241383085 241383233 -1281120 - FRAM SINE Alu -7 169 22 10844 168 26 29 chr1 241383233 241383461 -1280892 - L1M1 LINE L1 -620 7103 6876 2186 109 0 0 chr1 241383461 241383745 -1280608 + AluSg SINE Alu 1 284 -26 10844 168 26 29 chr1 241383745 241383878 -1280475 - L1M1 LINE L1 -847 6876 6744 2709 117 31 9 chr1 241383878 241384297 -1280056 + MSTA LTR MaLR 1 428 0 10844 168 26 29 chr1 241384297 241386796 -1277557 - L1M1 LINE L1 -979 6744 4246 2046 115 3 24 chr1 241386806 241387006 -1277347 - AluSx SINE Alu -22 290 96 4658 68 3 2 chr1 241387006 241387592 -1276761 + LTR14C LTR ERVK 1 587 0 2046 115 3 24 chr1 241387592 241387687 -1276666 - AluSx SINE Alu -216 96 1 1014 225 4 0 chr1 241387687 241387923 -1276430 - L1M1 LINE L1 -3314 4251 4015 317 322 0 0 chr1 241387924 241388014 -1276339 - L1MC4 LINE L1 -1339 6703 6614 219 186 0 0 chr1 241388018 241388061 -1276292 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 768 173 0 30 chr1 241388061 241388194 -1276159 - FLAM_C SINE Alu -14 129 1 2090 164 25 17 chr1 241388194 241388945 -1275408 - L1M1 LINE L1 -3533 4032 3270 * 2468 108 19 54 chr1 241388925 241389406 -1274947 + L1M1 LINE L1 2440 2903 -4662 5330 187 26 0 chr1 241389418 241390406 -1273947 - L1M1 LINE L1 -5371 2194 1181 5563 176 32 8 chr1 241390418 241391485 -1272868 - MSTA-int LTR MaLR -32 1619 528 5870 76 22 2 chr1 241391512 241392675 -1271678 - L1PA8A LINE L1 -28 6103 4922 3101 140 17 0 chr1 241392676 241393205 -1271148 - MSTA-int LTR MaLR -1113 538 1 2748 137 14 5 chr1 241393205 241393629 -1270724 - MSTA LTR MaLR 0 428 1 5235 175 39 61 chr1 241393635 241394832 -1269521 - L1M1 LINE L1 -6386 1179 9 365 342 6 13 chr1 241395291 241395449 -1268904 - L1 LINE L1 -2367 3779 3623 236 191 0 0 chr1 241395453 241395521 -1268832 + L1MA4 LINE L1 6226 6293 -7 1910 124 0 0 chr1 241396483 241396740 -1267613 + AluSx SINE Alu 40 296 -16 182 247 13 0 chr1 241396772 241396849 -1267504 + (GAATG)n Simple_repeat Simple_repeat 3 80 0 508 239 6 6 chr1 241396872 241397052 -1267301 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 * 599 224 6 0 chr1 241397042 241397221 -1267132 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 548 246 3 9 chr1 241397271 241397552 -1266801 + (AATAG)n Simple_repeat Simple_repeat 1 282 -468 2360 82 7 0 chr1 241397552 241397858 -1266495 + AluSg SINE Alu 1 308 -2 548 246 3 9 chr1 241397858 241398026 -1266327 + (AATAG)n Simple_repeat Simple_repeat 282 750 0 545 257 6 0 chr1 241398064 241398243 -1266110 + (AATAG)n Simple_repeat Simple_repeat 1 180 0 356 267 20 0 chr1 241398246 241398347 -1266006 + (GAGTG)n Simple_repeat Simple_repeat 4 106 0 1779 157 35 19 chr1 241398347 241398659 -1265694 - MSTC LTR MaLR -111 317 1 943 133 5 117 chr1 241398745 241398941 -1265412 - AluJb SINE Alu -14 298 125 1359 101 0 83 chr1 241398955 241399172 -1265181 + AluSg SINE Alu 1 199 -111 485 49 0 0 chr1 241399174 241399235 -1265118 - AluY SINE Alu -8 310 250 * 768 121 0 16 chr1 241399230 241399377 -1264976 + AluSg SINE Alu 184 310 0 499 228 89 16 chr1 241399479 241399602 -1264751 + FLAM_A SINE Alu 2 133 -9 2252 88 0 0 chr1 241399604 241399922 -1264431 + AluSq SINE Alu 1 318 0 23 0 0 0 chr1 241400084 241400107 -1264246 + AT_rich Low_complexity Low_complexity 1 23 0 2323 96 0 3 chr1 241400769 241401070 -1263283 - AluSx SINE Alu -12 300 1 733 157 30 37 chr1 241401082 241401216 -1263137 - FLAM_C SINE Alu 0 133 1 826 238 63 8 chr1 241401216 241401461 -1262892 - L1PA15-16 LINE L1 -3757 3092 2831 806 188 0 8 chr1 241401461 241401589 -1262764 - FLAM_C SINE Alu -15 128 2 382 204 0 0 chr1 241401590 241401688 -1262665 - L1PA15-16 LINE L1 -4009 2840 2743 2035 95 33 0 chr1 241401958 241402275 -1262078 - AluSg SINE Alu 0 326 1 180 0 0 0 chr1 241403482 241403502 -1260851 + (TA)n Simple_repeat Simple_repeat 2 21 0 2103 104 3 7 chr1 241403505 241403794 -1260559 - AluY SINE Alu -23 288 1 180 176 0 0 chr1 241404268 241404302 -1260051 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2374 205 84 20 chr1 241404318 241404952 -1259401 - L1MA9 LINE L1 -28 6284 5611 2400 88 0 0 chr1 241404952 241405257 -1259096 - AluSx SINE Alu -5 307 3 838 170 15 0 chr1 241405259 241405394 -1258959 - FLAM_C SINE Alu 0 143 7 613 200 71 82 chr1 241405619 241405747 -1258606 - L1MB2 LINE L1 -181 5990 5850 810 78 0 0 chr1 241405747 241405850 -1258503 - L1MA3 LINE L1 0 6305 6203 613 200 71 82 chr1 241405850 241405955 -1258398 - L1MB2 LINE L1 -321 5850 5745 289 222 14 0 chr1 241405975 241406047 -1258306 - L1M3 LINE L1 -322 5922 5850 198 0 0 0 chr1 241406051 241406073 -1258280 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1806 132 10 34 chr1 241406121 241406417 -1257936 - AluSx SINE Alu -23 289 1 432 278 0 0 chr1 241406421 241406536 -1257817 - L1M3 LINE L1 -382 5853 5739 1114 254 30 15 chr1 241406539 241406640 -1257713 - L1M3 LINE L1 -1296 4914 4816 1998 113 58 3 chr1 241406640 241406932 -1257421 - AluSx SINE Alu -4 308 1 1114 254 30 15 chr1 241406932 241407428 -1256925 - L1M3 LINE L1 -1394 4816 2672 2496 71 0 0 chr1 241407615 241407924 -1256429 - AluY SINE Alu -2 309 1 2257 104 0 0 chr1 241407924 241408221 -1256132 - AluSx SINE Alu -14 298 1 1535 118 5 9 chr1 241408368 241408588 -1255765 - AluSx SINE Alu -93 219 1 225 193 88 0 chr1 241408588 241408645 -1255708 - L1MEc LINE L1 -4679 1717 1656 * 650 266 114 25 chr1 241408634 241409029 -1255324 - L1M3 LINE L1 -4813 1328 899 2042 116 0 7 chr1 241409041 241409353 -1255000 - AluSg SINE Alu 0 310 1 22 0 0 0 chr1 241409770 241409792 -1254561 + AT_rich Low_complexity Low_complexity 1 22 0 6464 165 27 18 chr1 241409792 241410300 -1254053 - L1MA2 LINE L1 -8 6296 5794 1764 94 113 4 chr1 241410300 241410566 -1253787 - AluSc SINE Alu -14 295 1 6464 165 27 18 chr1 241410566 241412265 -1252088 - L1MA2 LINE L1 -510 5794 2234 411 179 17 26 chr1 241412283 241412400 -1251953 + CT-rich Low_complexity Low_complexity 1 116 0 1805 198 94 106 chr1 241412439 241412471 -1251882 - L1M1 LINE L1 -3900 3665 3634 1630 156 63 0 chr1 241412471 241412740 -1251613 - AluJb SINE Alu -26 286 1 1805 198 94 106 chr1 241412740 241413267 -1251086 - L1M1 LINE L1 -3931 3634 3148 1695 117 8 32 chr1 241413268 241413434 -1250919 - AluSp SINE Alu -17 296 136 2493 50 0 13 chr1 241413434 241413737 -1250616 - AluY SINE Alu -12 299 1 1695 117 8 32 chr1 241413737 241413818 -1250535 - AluSp SINE Alu -177 136 55 1783 121 37 14 chr1 241413820 241414117 -1250236 - L1M1 LINE L1 -4541 3024 2721 1512 185 11 4 chr1 241416179 241416460 -1247893 + AluJb SINE Alu 2 284 -28 5457 107 90 7 chr1 241416968 241417799 -1246554 + LTR13 LTR ERVK 108 1007 0 1213 99 0 0 chr1 241417799 241417961 -1246392 + AluSg/x SINE Alu 148 309 -1 1150 277 58 37 chr1 241418021 241418538 -1245815 - L1MEc LINE L1 -5832 564 37 2196 135 135 8 chr1 241418713 241419090 -1245263 + MSTA LTR MaLR 4 428 0 10193 143 4 36 chr1 241419092 241420722 -1243631 + MSTA-int LTR MaLR 3 1580 0 2397 123 131 11 chr1 241420722 241421104 -1243249 + MSTA LTR MaLR 1 428 0 1643 258 30 68 chr1 241421118 241421480 -1242873 + L2 LINE L2 2356 2730 -583 2479 75 3 0 chr1 241421480 241421785 -1242568 + AluSp SINE Alu 1 306 -7 1643 258 30 68 chr1 241421785 241421920 -1242433 + L2 LINE L2 2730 2869 -444 1485 200 21 17 chr1 241421920 241422210 -1242143 - AluJo SINE Alu -16 296 6 1643 258 30 68 chr1 241422210 241422223 -1242130 + L2 LINE L2 2869 2881 -432 1897 132 28 21 chr1 241422223 241422511 -1241842 - AluSx SINE Alu -22 290 1 1643 258 30 68 chr1 241422511 241422730 -1241623 + L2 LINE L2 2881 3059 -254 40 21 0 0 chr1 241422742 241422789 -1241564 + AT_rich Low_complexity Low_complexity 1 47 0 2276 121 13 116 chr1 241422798 241422941 -1241412 - MSTC LTR MaLR -12 416 260 1785 127 40 75 chr1 241422941 241423263 -1241090 - AluSx SINE Alu -1 311 1 2276 121 13 116 chr1 241423263 241423341 -1241012 - MSTC LTR MaLR -168 260 176 2317 65 34 0 chr1 241423341 241423632 -1240721 - AluY SINE Alu -10 301 1 2276 121 13 116 chr1 241423632 241423818 -1240535 - MSTC LTR MaLR -252 176 59 2149 119 0 22 chr1 241423818 241424129 -1240224 - AluSx SINE Alu -8 304 1 2276 121 13 116 chr1 241424129 241424183 -1240170 - MSTC LTR MaLR -369 59 1 291 188 109 0 chr1 241424183 241424247 -1240106 + MER21B LTR ERV1 19 89 -774 3472 214 70 4 chr1 241424270 241424995 -1239358 + MER21B LTR ERV1 19 791 -72 335 213 35 148 chr1 241425069 241425271 -1239082 + L2 LINE L2 3054 3232 -81 790 203 0 8 chr1 241425280 241425413 -1238940 - AluJb SINE Alu -179 133 2 357 239 57 0 chr1 241425417 241425505 -1238848 + L2 LINE L2 3221 3313 0 335 341 111 72 chr1 241425550 241425741 -1238612 - L2 LINE L2 -349 2965 2783 2186 70 63 11 chr1 241425741 241426025 -1238328 + AluY SINE Alu 1 299 -12 335 341 111 72 chr1 241426025 241426372 -1237981 - L2 LINE L2 -531 2783 2406 1635 133 104 0 chr1 241427782 241428060 -1236293 - AluJb SINE Alu -5 307 1 1080 87 58 39 chr1 241429114 241429320 -1235033 - SVA Other Other -1166 220 11 1119 235 92 25 chr1 241429328 241429686 -1234667 + HERVL74 LTR ERVL 1203 1584 -4101 967 232 111 36 chr1 241429708 241429835 -1234518 - L1M4 LINE L1 -2654 3492 3376 2130 87 45 3 chr1 241429835 241430124 -1234229 - AluY SINE Alu -9 302 2 967 232 111 36 chr1 241430124 241430526 -1233827 - L1M4 LINE L1 -2770 3376 2923 3892 115 0 2 chr1 241430691 241431203 -1233150 - MER9 LTR ERVK 0 511 1 2435 96 5 4 chr1 241431203 241431540 -1232813 - HERVK9 LTR ERVK 0 5916 4922 15520 67 3 1 chr1 241431581 241433501 -1230852 - HERVK9 LTR ERVK -282 5634 3711 13785 50 18 0 chr1 241433501 241435145 -1229208 - HERVK9 LTR ERVK -3130 2786 1113 4554 70 2 3 chr1 241435146 241435715 -1228638 - HERVK9 LTR ERVK -5348 568 1 3543 101 0 4 chr1 241435715 241436189 -1228164 - MER9 LTR ERVK 0 511 40 927 256 22 72 chr1 241436287 241436647 -1227706 - LTR52 LTR ERVL -67 354 13 399 189 0 0 chr1 241436718 241436792 -1227561 + L1P3 LINE L1 1 74 -5801 2396 89 0 3 chr1 241436793 241437095 -1227258 + AluY SINE Alu 2 302 -9 717 162 70 0 chr1 241437184 241437326 -1227027 + L1MA10 LINE L1 6176 6327 -7 2223 108 3 0 chr1 241437674 241437970 -1226383 + AluSx SINE Alu 1 297 -15 2066 122 17 0 chr1 241438311 241438599 -1225754 - AluSg SINE Alu -17 293 1 1888 84 84 11 chr1 241439023 241439322 -1225031 + AluSq SINE Alu 4 321 0 2151 112 3 3 chr1 241439541 241439835 -1224518 - AluSx SINE Alu -18 294 1 3295 188 45 28 chr1 241440128 241440832 -1223521 - L1MB8 LINE L1 -9 6169 5454 1130 157 289 13 chr1 241441112 241441424 -1222929 - L1MD1 LINE L1 -14 6228 5831 988 228 115 88 chr1 241441492 241442084 -1222269 - L1MC4 LINE L1 -137 7905 7298 1826 53 129 15 chr1 241442313 241442576 -1221777 - AluY SINE Alu -18 293 1 1794 167 3 3 chr1 241442653 241442946 -1221407 - AluJo SINE Alu -19 293 1 24 0 0 0 chr1 241443844 241443868 -1220485 + AT_rich Low_complexity Low_complexity 1 24 0 1761 147 0 50 chr1 241443926 241444225 -1220128 + AluJo SINE Alu 6 289 -23 2373 98 0 19 chr1 241444247 241444565 -1219788 + AluSx SINE Alu 1 312 0 183 388 15 0 chr1 241447449 241447516 -1216837 + MIR SINE MIR 164 231 -31 205 182 45 0 chr1 241447560 241447604 -1216749 + A-rich Low_complexity Low_complexity 5 50 0 1609 176 36 4 chr1 241447954 241448233 -1216120 - AluJo SINE Alu -24 288 1 4052 100 3 51 chr1 241449515 241450046 -1214307 - L1MA1 LINE L1 -463 5839 5284 2058 120 17 13 chr1 241450046 241450346 -1214007 - AluSx SINE Alu -11 301 1 4052 100 3 51 chr1 241450346 241450516 -1213837 - L1MA1 LINE L1 -1018 5284 5107 2900 0 0 0 chr1 241450516 241450822 -1213531 - AluYa5 SINE Alu -5 306 1 4052 100 3 51 chr1 241450822 241450900 -1213453 - L1MA1 LINE L1 -1195 5107 5098 3992 133 6 27 chr1 241450900 241450928 -1213425 - MER4B LTR ERV1 0 610 583 2253 116 0 0 chr1 241450928 241451229 -1213124 - AluSx SINE Alu -11 301 1 3992 133 6 27 chr1 241451229 241451823 -1212530 - MER4B LTR ERV1 -27 583 1 4052 100 3 51 chr1 241451823 241451842 -1212511 - L1MA1 LINE L1 -1204 5098 5080 1506 308 28 2 chr1 241451856 241452285 -1212068 - L1PA13 LINE L1 -6347 440 1 1946 135 10 13 chr1 241453284 241453587 -1210766 + AluJb SINE Alu 11 312 0 2444 42 16 35 chr1 241454772 241455084 -1209269 - AluY SINE Alu -5 306 1 26 30 0 0 chr1 241455966 241455999 -1208354 + AT_rich Low_complexity Low_complexity 1 33 0 361 121 136 0 chr1 241456251 241456317 -1208036 + FLAM_C SINE Alu 36 110 -23 2421 82 0 9 chr1 241456325 241456640 -1207713 - AluSx SINE Alu 0 312 1 386 275 175 31 chr1 241456706 241457066 -1207287 - L1M4 LINE L1 -3463 2683 2272 2281 88 0 16 chr1 241457607 241457912 -1206441 - AluSg SINE Alu -10 300 1 27 0 0 0 chr1 241457944 241457971 -1206382 + AT_rich Low_complexity Low_complexity 1 27 0 478 230 146 128 chr1 241458089 241458370 -1205983 - L1MC4a LINE L1 -1801 6007 5732 1869 138 3 18 chr1 241458370 241458653 -1205700 - AluSx SINE Alu -33 279 1 478 230 146 128 chr1 241458653 241459111 -1205242 - L1MC4a LINE L1 -2076 5732 5255 2073 147 7 3 chr1 241459770 241460077 -1204276 - AluJb SINE Alu -4 308 1 23 0 0 0 chr1 241460169 241460192 -1204161 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 241460252 241460280 -1204073 + AT_rich Low_complexity Low_complexity 1 28 0 336 269 214 0 chr1 241461597 241461779 -1202574 + MIR SINE MIR 42 262 0 1630 148 61 0 chr1 241462261 241462539 -1201814 - Tigger1 DNA MER2_type 0 2418 2124 1552 43 5 5 chr1 241462639 241462825 -1201528 - AluY SINE Alu -109 202 17 1012 244 86 34 chr1 241462835 241463220 -1201133 - MER21B LTR ERV1 -62 801 397 * 1343 251 142 21 chr1 241463219 241463754 -1200599 + MER92B LTR ERV1 37 636 0 303 49 0 0 chr1 241465068 241465109 -1199244 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 10805 34 65 8 chr1 241465114 241466418 -1197935 + SVA Other Other 2 1380 -6 796 300 37 25 chr1 241466432 241466839 -1197514 + HERVI LTR ERV1 1685 2096 -5689 1822 137 0 33 chr1 241467062 241467273 -1197080 - AluSx SINE Alu 0 312 128 210 37 0 0 chr1 241467273 241467300 -1197053 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1822 137 0 33 chr1 241467300 241467415 -1196938 - AluSx SINE Alu -184 128 11 21 36 0 0 chr1 241467920 241467948 -1196405 + AT_rich Low_complexity Low_complexity 1 28 0 493 330 15 15 chr1 241468106 241468306 -1196047 + MER57B LTR ERV1 36 235 -199 8905 168 25 1 chr1 241468309 241469980 -1194373 + L1PA13 LINE L1 2012 3734 -3063 1549 98 20 6 chr1 241469961 241470259 -1194094 + L1PA8A LINE L1 5127 5424 -707 * 370 16 0 0 chr1 241470263 241470315 -1194038 + L1PA8A LINE L1 5613 5664 -467 182 276 184 20 chr1 241470428 241470526 -1193827 + MIR SINE MIR 133 246 -16 3748 162 16 124 chr1 241470529 241470766 -1193587 - MER6 DNA MER2_type 0 865 604 556 154 0 0 chr1 241470766 241470844 -1193509 + FRAM SINE Alu 32 109 -67 3748 162 16 124 chr1 241470844 241471083 -1193270 - MER6 DNA MER2_type -261 604 341 2285 78 0 31 chr1 241471083 241471404 -1192949 - AluY SINE Alu 0 311 1 3748 162 16 124 chr1 241471404 241471584 -1192769 - MER6 DNA MER2_type -524 341 243 2189 122 0 0 chr1 241471584 241471880 -1192473 - AluSx SINE Alu -16 296 1 3748 162 16 124 chr1 241471880 241472040 -1192313 - MER6 DNA MER2_type -622 243 67 1026 102 0 0 chr1 241472106 241472243 -1192110 + L1PA6 LINE L1 6015 6151 -3 2124 130 54 38 chr1 241472740 241473108 -1191245 - THE1C LTR MaLR -1 374 1 234 174 0 0 chr1 241473259 241473305 -1191048 + L1P LINE L1 4471 4516 -1630 1653 130 56 30 chr1 241473305 241473720 -1190633 + MER51A LTR ERV1 1 634 0 3962 199 8 13 chr1 241473720 241474542 -1189811 + L1P LINE L1 4513 5330 -816 502 136 0 0 chr1 241474544 241474610 -1189743 + AluJ/FLAM SINE Alu 3 68 -244 1921 223 0 0 chr1 241474611 241475029 -1189324 + L1PB1 LINE L1 4657 5074 -1072 6337 104 41 2 chr1 241477322 241478395 -1185958 + L1PB1 LINE L1 5042 6150 -1 3041 107 2 41 chr1 241478403 241478890 -1185463 + L1MA1 LINE L1 5771 6238 -64 545 117 287 0 chr1 241479444 241479538 -1184815 - 5S rRNA rRNA 0 121 1 2344 85 3 16 chr1 241479704 241480020 -1184333 + AluSx SINE Alu 1 312 0 2081 62 16 0 chr1 241480234 241480492 -1183861 - AluSp SINE Alu -10 303 42 1380 190 35 21 chr1 241480598 241480887 -1183466 + AluJo SINE Alu 1 293 -19 230 210 49 74 chr1 241480888 241480969 -1183384 - MER67C LTR ERV1 -612 98 20 1093 83 0 0 chr1 241481719 241481864 -1182489 - AluYa5 SINE Alu -7 304 160 1400 265 172 7 chr1 241482616 241483080 -1181273 - MLT1H LTR MaLR 0 549 9 238 299 83 35 chr1 241483080 241483224 -1181129 - MIR SINE MIR -109 153 3 265 290 0 0 chr1 241483688 241483750 -1180603 + MER21B LTR ERV1 568 629 -234 5627 249 142 25 chr1 241483751 241486296 -1178057 - L1M4 LINE L1 -859 5785 2945 1259 255 66 53 chr1 241486314 241486878 -1177475 - L1M4 LINE L1 -5359 1183 613 406 348 57 0 chr1 241486974 241487221 -1177132 - L1M4 LINE L1 -6280 262 2 * 1457 258 29 16 chr1 241487220 241487770 -1176583 - L1M4 LINE L1 -1315 4831 4275 2269 99 3 0 chr1 241487827 241488120 -1176233 - AluSq SINE Alu -19 294 1 1329 255 95 16 chr1 241488127 241488181 -1176172 - L1MCa LINE L1 -5859 567 519 194 57 57 0 chr1 241488181 241488216 -1176137 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1329 255 95 16 chr1 241488216 241488655 -1175698 - L1MCa LINE L1 -5907 519 35 581 313 34 10 chr1 241489587 241489795 -1174558 + HERVI LTR ERV1 776 988 -6797 770 303 42 26 chr1 241490003 241490386 -1173967 + HERVI LTR ERV1 954 1640 -5307 582 239 117 16 chr1 241490521 241490768 -1173585 + L1MB2 LINE L1 2551 2822 -3324 411 190 98 92 chr1 241490789 241490831 -1173522 + L1MB2 LINE L1 4519 4559 -1587 2569 56 0 7 chr1 241490831 241491135 -1173218 + AluY SINE Alu 1 302 -9 411 190 98 92 chr1 241491135 241491276 -1173077 + L1MB2 LINE L1 4559 4703 -1443 493 225 108 39 chr1 241491282 241491411 -1172942 + FLAM_C SINE Alu 5 142 -1 2983 256 75 15 chr1 241491429 241492173 -1172180 + L1MB2 LINE L1 4693 5391 -780 2016 141 0 3 chr1 241492173 241492464 -1171889 + AluSx SINE Alu 1 290 -22 2983 256 75 15 chr1 241492464 241493069 -1171284 + L1MB2 LINE L1 5391 6129 -42 556 183 0 0 chr1 241493054 241493158 -1171195 + L1MA9 LINE L1 5387 5490 -801 * 382 221 77 0 chr1 241493156 241493260 -1171093 + L1PB4 LINE L1 6045 6156 0 * 484 179 80 0 chr1 241493274 241493386 -1170967 + L1MB2 LINE L1 5775 5895 -276 * 2816 201 32 16 chr1 241493382 241494066 -1170287 + L1MA9 LINE L1 5492 6287 -25 2331 82 126 6 chr1 241494266 241494583 -1169770 + THE1A LTR MaLR 1 355 0 298 306 184 27 chr1 241496419 241496566 -1167787 - MER5A DNA MER1_type -8 181 12 469 234 33 102 chr1 241496732 241496976 -1167377 + L1MC4 LINE L1 7281 7507 -535 2240 117 7 0 chr1 241496977 241497277 -1167076 - AluSx SINE Alu -10 302 1 267 342 68 31 chr1 241498291 241498452 -1165901 + MER5B DNA MER1_type 10 176 -2 189 361 98 15 chr1 241498468 241498601 -1165752 - MER5A DNA MER1_type -7 182 39 2236 92 7 3 chr1 241498698 241499003 -1165350 + AluSp SINE Alu 1 306 -7 182 250 42 132 chr1 241499151 241499295 -1165058 - MIR SINE MIR -5 257 127 513 235 78 12 chr1 241500199 241500365 -1163988 + MER113 DNA MER1_type? 302 478 -43 3134 192 38 48 chr1 241500431 241500836 -1163517 - L1MC3 LINE L1 0 7785 7390 920 118 0 22 chr1 241500836 241500971 -1163382 - FLAM_C SINE Alu -1 132 1 3134 192 38 48 chr1 241500971 241501357 -1162996 - L1MC3 LINE L1 -395 7390 7002 1632 144 84 63 chr1 241501448 241501611 -1162742 - THE1C LTR MaLR 0 375 217 537 16 0 0 chr1 241501611 241501673 -1162680 + (GA)n Simple_repeat Simple_repeat 1 62 0 1632 144 84 63 chr1 241501673 241501876 -1162477 - THE1C LTR MaLR -158 217 1 1640 155 7 4 chr1 241501878 241502156 -1162197 - AluJb SINE Alu -33 279 1 1612 125 73 22 chr1 241502693 241502965 -1161388 + AluJo SINE Alu 11 296 -16 2312 29 11 0 chr1 241502967 241503290 -1161063 + AluY SINE Alu 1 326 0 186 336 37 19 chr1 241503421 241503528 -1160825 + L2 LINE L2 2959 3067 -205 2250 124 35 52 chr1 241503626 241504028 -1160325 + MER48 LTR ERV1 1 395 -3 15120 110 27 10 chr1 241504031 241507078 -1157275 + HERVH48 LTR ERV1 1 3157 -3497 6160 73 40 1 chr1 241507070 241507867 -1156486 + HERVH48 LTR ERV1 5827 6654 0 * 2110 109 32 129 chr1 241507867 241508308 -1156045 + MER48 LTR ERV1 1 398 0 470 301 137 0 chr1 241508352 241508535 -1155818 + MIR SINE MIR 20 227 -35 1774 162 7 3 chr1 241510061 241510364 -1153989 - AluJb SINE Alu -6 306 3 701 208 64 102 chr1 241510393 241510658 -1153695 + LTR38B LTR ERV1 10 264 -346 1879 140 0 3 chr1 241510770 241511108 -1153245 + AluSx SINE Alu 1 337 0 264 180 0 0 chr1 241511149 241511199 -1153154 - LTR38B LTR ERV1 -552 58 9 1019 201 122 19 chr1 241511229 241511492 -1152861 + LTR38 LTR ERV1 267 556 0 1106 199 0 0 chr1 241512106 241512287 -1152066 - LTR39 LTR ERV1 -2 781 601 561 155 58 0 chr1 241512288 241512391 -1151962 + HY1 scRNA scRNA 1 109 -3 267 189 0 0 chr1 241512394 241512447 -1151906 + A-rich Low_complexity Low_complexity 1 53 0 2041 138 28 6 chr1 241512447 241512772 -1151581 - LTR39 LTR ERV1 -172 611 280 1225 231 53 31 chr1 241512783 241513143 -1151210 + MER74B LTR ERVL 181 548 -74 623 173 73 0 chr1 241513914 241514024 -1150329 + FLAM_C SINE Alu 1 118 -15 185 300 25 38 chr1 241514121 241514201 -1150152 - MIR3 SINE MIR -48 160 82 1464 155 19 70 chr1 241514510 241514826 -1149527 - AluJo SINE Alu -12 300 1 1438 191 35 3 chr1 241515781 241516069 -1148284 - AluSx SINE Alu -15 297 1 201 271 260 10 chr1 241516464 241516560 -1147793 + MIR SINE MIR 47 166 -96 1934 180 92 12 chr1 241516572 241516972 -1147381 + MLT1C LTR MaLR 2 433 -34 217 263 153 25 chr1 241519174 241519292 -1145061 - MIR SINE MIR -12 250 118 807 82 7 122 chr1 241519945 241520092 -1144261 - FLAM_C SINE Alu -10 133 4 1869 194 29 5 chr1 241520464 241520845 -1143508 + MLT1B LTR MaLR 1 390 0 677 236 62 0 chr1 241520845 241521006 -1143347 + MLT1B-int LTR MaLR 1 171 -1200 * 2847 203 26 5 chr1 241520982 241521548 -1142805 + MLT1B-int LTR MaLR 307 884 -487 365 267 10 10 chr1 241521603 241521704 -1142649 + MLT1B-int LTR MaLR 676 776 -959 1877 187 37 46 chr1 241521730 241521825 -1142528 + MLT1B-int LTR MaLR 940 1034 -337 2072 116 0 7 chr1 241521825 241522126 -1142227 - AluSq SINE Alu -14 299 1 1877 187 37 46 chr1 241522126 241522463 -1141890 + MLT1B-int LTR MaLR 1034 1368 -3 742 160 8 13 chr1 241522474 241522618 -1141735 + MLT1B LTR MaLR 7 139 -235 783 148 0 0 chr1 241522619 241522741 -1141612 + AluSg/x SINE Alu 176 297 -15 396 290 76 31 chr1 241522744 241522912 -1141441 - MIR SINE MIR -42 220 51 643 223 0 25 chr1 241523247 241523394 -1140959 + FLAM_A SINE Alu 1 144 0 329 222 63 167 chr1 241523608 241523650 -1140703 + MIR SINE MIR 19 64 -198 1982 124 3 7 chr1 241523650 241523948 -1140405 - AluSx SINE Alu -15 297 1 1957 132 26 0 chr1 241523949 241524252 -1140101 - AluSx SINE Alu -1 311 1 329 222 63 167 chr1 241524252 241524446 -1139907 + MIR SINE MIR 63 232 -30 325 284 35 18 chr1 241525723 241525892 -1138461 + (CA)n Simple_repeat Simple_repeat 1 172 0 193 267 0 0 chr1 241526162 241526207 -1138146 + L2 LINE L2 3268 3312 -1 1841 200 22 11 chr1 241527962 241528322 -1136031 - MLT1A1 LTR MaLR -1 364 1 2476 203 154 69 chr1 241528322 241528570 -1135783 - MLT1A1-int LTR MaLR 0 1735 1510 2046 121 3 0 chr1 241528570 241528868 -1135485 + AluSx SINE Alu 1 299 -13 267 54 0 0 chr1 241528868 241528905 -1135448 + (CA)n Simple_repeat Simple_repeat 2 38 0 2476 203 154 69 chr1 241528905 241529943 -1134410 - MLT1A1-int LTR MaLR -225 1510 129 1724 120 113 14 chr1 241529943 241530227 -1134126 + AluSx SINE Alu 1 312 0 2476 203 154 69 chr1 241530227 241530369 -1133984 - MLT1A1-int LTR MaLR -1606 129 1 1786 177 13 32 chr1 241530369 241530741 -1133612 - MLT1A1 LTR MaLR 0 365 1 236 304 94 20 chr1 241531140 241531341 -1133012 + L1MC/D LINE L1 5665 5880 -1928 1719 171 10 0 chr1 241531514 241531819 -1132534 - AluJo SINE Alu -4 308 1 23 54 0 0 chr1 241531892 241531929 -1132424 + AT_rich Low_complexity Low_complexity 1 37 0 1557 197 3 16 chr1 241532204 241532513 -1131840 - AluSx SINE Alu -7 305 1 207 0 0 0 chr1 241532523 241532546 -1131807 + (T)n Simple_repeat Simple_repeat 1 23 0 359 325 119 22 chr1 241532666 241532943 -1131410 + L1MC4 LINE L1 7359 7662 -380 436 261 104 22 chr1 241532946 241533214 -1131139 + L1MC4 LINE L1 7753 8042 0 256 247 104 0 chr1 241533323 241533400 -1130953 - MER5A DNA MER1_type -84 105 21 2297 138 3 5 chr1 241533773 241534156 -1130197 + L1PB1 LINE L1 5769 6150 -1 3402 105 2 40 chr1 241534164 241534717 -1129636 + L1MA1 LINE L1 5771 6302 0 5056 165 43 36 chr1 241534751 241535607 -1128746 + L1MA4A LINE L1 4736 5585 -718 207 0 0 0 chr1 241535607 241535630 -1128723 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5056 165 43 36 chr1 241535630 241536203 -1128150 + L1MA4A LINE L1 5585 6161 -142 1502 188 10 10 chr1 241536203 241536491 -1127862 + AluJb SINE Alu 1 288 -24 5056 165 43 36 chr1 241536491 241536632 -1127721 + L1MA4A LINE L1 6161 6300 -3 610 314 42 31 chr1 241536633 241536920 -1127433 + L1MEd LINE L1 921 1210 -4909 1524 142 16 66 chr1 241536933 241537251 -1127102 + AluJo SINE Alu 11 312 0 1775 114 16 35 chr1 241537342 241537659 -1126694 + AluY SINE Alu 1 311 0 230 336 52 9 chr1 241539842 241539958 -1124395 + MIR SINE MIR 112 232 -30 11084 31 7 0 chr1 241540287 241542354 -1121999 + L1PA5 LINE L1 4075 6147 -7 27 49 0 0 chr1 241543216 241543257 -1121096 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr1 241543316 241543341 -1121012 + AT_rich Low_complexity Low_complexity 1 25 0 1714 189 0 3 chr1 241543631 241543932 -1120421 - AluJo SINE Alu -7 305 6 22 0 0 0 chr1 241544271 241544293 -1120060 + AT_rich Low_complexity Low_complexity 1 22 0 2060 93 6 6 chr1 241545023 241545335 -1119018 - AluSp SINE Alu -1 312 1 1178 184 70 121 chr1 241545436 241545866 -1118487 - L1MA9 LINE L1 -10 6302 5895 305 250 158 88 chr1 241545866 241546060 -1118293 + L1MC4a LINE L1 6680 6894 -914 1982 132 0 28 chr1 241546060 241546379 -1117974 - AluSx SINE Alu -2 310 1 305 250 158 88 chr1 241546379 241546412 -1117941 + L1MC4a LINE L1 6894 6923 -885 613 213 41 0 chr1 241546430 241546552 -1117801 + FLAM_A SINE Alu 1 127 -6 2273 251 39 57 chr1 241546837 241547710 -1116643 + L1M3b LINE L1 853 1709 -4572 456 247 0 0 chr1 241547711 241547808 -1116545 + AluJ/FLAM SINE Alu 2 98 -214 99 66 0 0 chr1 241547811 241547994 -1116359 + AT_rich Low_complexity Low_complexity 1 183 0 1500 199 53 0 chr1 241548003 241548285 -1116068 + AluJo SINE Alu 1 297 -5 269 325 31 11 chr1 241548287 241548501 -1115852 + L1M4c LINE L1 1322 1916 -4467 3265 108 12 0 chr1 241548508 241548989 -1115364 - L1MA2 LINE L1 0 6304 5818 2391 64 0 0 chr1 241548995 241549291 -1115062 + L1PA3 LINE L1 5857 6152 -3 13320 177 31 13 chr1 241549303 241549727 -1114626 - L1MA2 LINE L1 -473 5829 5414 2598 62 3 0 chr1 241549727 241550036 -1114317 - AluY SINE Alu -1 310 1 13320 177 31 13 chr1 241550036 241551111 -1113242 - L1MA2 LINE L1 -888 5414 4360 2368 97 0 3 chr1 241551111 241551419 -1112934 - AluY SINE Alu -4 307 1 13320 177 31 13 chr1 241551419 241553326 -1111027 - L1MA2 LINE L1 -1942 4360 2357 2233 158 87 5 chr1 241554184 241554577 -1109776 + MSTB LTR MaLR 2 426 0 2749 184 24 14 chr1 241554784 241555370 -1108983 - L1MA7 LINE L1 -10 6281 5690 475 210 98 59 chr1 241555371 241555561 -1108792 - L1MA7 LINE L1 -566 5588 5469 2455 63 0 0 chr1 241555825 241556112 -1108241 - AluY SINE Alu -11 300 14 24 0 0 0 chr1 241556299 241556323 -1108030 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr1 241556365 241556404 -1107949 + AT_rich Low_complexity Low_complexity 1 39 0 860 112 0 26 chr1 241556475 241556591 -1107762 + FLAM_C SINE Alu 15 127 -16 24 0 0 0 chr1 241556595 241556619 -1107734 + AT_rich Low_complexity Low_complexity 1 24 0 2193 130 3 0 chr1 241556688 241556988 -1107365 + AluSx SINE Alu 1 301 -11 1661 165 216 3 chr1 241558035 241558386 -1105967 + MSTC LTR MaLR 1 426 -2 649 104 73 0 chr1 241558633 241558729 -1105624 - AluSp/q SINE Alu -14 299 197 1683 149 7 45 chr1 241558848 241559156 -1105197 - AluSx SINE Alu -16 296 1 207 69 0 0 chr1 241559446 241559475 -1104878 + (TG)n Simple_repeat Simple_repeat 2 30 0 652 322 77 58 chr1 241559512 241560043 -1104310 - L1MEd LINE L1 -4886 1233 693 715 208 0 8 chr1 241560121 241560251 -1104102 + FLAM_A SINE Alu 5 133 0 268 320 40 0 chr1 241560259 241560384 -1103969 - L1MEd LINE L1 -5495 624 495 371 390 63 17 chr1 241560448 241560748 -1103605 - L1MEd LINE L1 -5737 382 69 3393 204 50 19 chr1 241560749 241561502 -1102851 + L1PA16 LINE L1 5151 5931 -240 2101 103 7 17 chr1 241561502 241561794 -1102559 + AluSq SINE Alu 1 289 -24 3393 204 50 19 chr1 241561794 241562041 -1102312 + L1PA16 LINE L1 5931 6169 -2 2075 151 0 3 chr1 241562500 241562804 -1101549 + AluJo SINE Alu 1 303 -9 619 219 15 44 chr1 241564136 241564273 -1100080 + FLAM_A SINE Alu 1 133 0 1432 172 153 8 chr1 241564335 241564597 -1099756 + AluJo SINE Alu 3 302 0 1631 303 47 36 chr1 241564623 241565009 -1099344 + L1MA8 LINE L1 5800 6192 -99 806 142 24 0 chr1 241565009 241565136 -1099217 - FLAM_A SINE Alu -3 130 1 1631 303 47 36 chr1 241565136 241565234 -1099119 + L1MA8 LINE L1 6192 6287 -4 1089 156 113 32 chr1 241565854 241566136 -1098217 - L1MA9 LINE L1 -3 6309 6005 805 120 0 0 chr1 241566146 241566254 -1098099 - FLAM_A SINE Alu -15 127 20 417 96 0 0 chr1 241566439 241566491 -1097862 + Alu SINE Alu 2 53 -258 225 154 0 0 chr1 241566491 241566530 -1097823 + (TA)n Simple_repeat Simple_repeat 2 40 0 323 356 0 0 chr1 241566541 241566631 -1097722 + L1MC4 LINE L1 6614 6703 -1339 * 392 301 0 0 chr1 241566553 241566646 -1097707 - L1MC4 LINE L1 -1339 6703 6611 192 327 59 20 chr1 241566735 241566836 -1097517 - L3 LINE CR1 -105 1472 1368 1377 124 0 30 chr1 241567117 241567351 -1097002 + MLT1B LTR MaLR 1 227 -163 2346 103 3 0 chr1 241567542 241567843 -1096510 - AluSq SINE Alu -11 302 1 929 129 0 0 chr1 241567900 241568040 -1096313 + MLT1B LTR MaLR 235 374 -16 405 294 44 0 chr1 241568432 241568568 -1095785 - MIR SINE MIR -37 225 84 21 82 0 0 chr1 241571503 241571552 -1092801 + GC_rich Low_complexity Low_complexity 1 49 0 38 61 0 0 chr1 241572194 241572260 -1092093 + GC_rich Low_complexity Low_complexity 1 66 0 33 56 0 0 chr1 241572476 241572530 -1091823 + GC_rich Low_complexity Low_complexity 1 54 0 582 276 53 6 chr1 241574236 241574406 -1089947 + MIR SINE MIR 11 188 -74 256 260 177 101 chr1 241574407 241574684 -1089669 - L2 LINE L2 0 3313 3016 409 250 193 9 chr1 241575070 241575282 -1089071 - L2 LINE L2 -124 3189 2939 192 282 176 72 chr1 241575338 241576208 -1088145 - L2 LINE L2 -554 2760 1801 1399 192 97 15 chr1 241576418 241576854 -1087499 + MLT2D LTR ERVL 1 464 0 187 310 70 10 chr1 241576854 241576954 -1087399 - L2 LINE L2 -1925 1389 1284 266 73 24 0 chr1 241577954 241577995 -1086358 + (GGA)n Simple_repeat Simple_repeat 1 42 0 2180 203 22 7 chr1 241578005 241578459 -1085894 + MER88 LTR ERVL 1 461 -3 2303 77 11 0 chr1 241578829 241579144 -1085209 - AluSg SINE Alu 0 310 1 1894 148 41 14 chr1 241579707 241579997 -1084356 + AluJo SINE Alu 1 298 -14 2555 202 36 18 chr1 241581103 241581609 -1082744 + MLT2B2 LTR ERVL 1 515 0 1876 174 13 3 chr1 241581697 241582001 -1082352 - AluJb SINE Alu -5 307 1 676 239 135 46 chr1 241582151 241582544 -1081809 + MLT1C LTR MaLR 1 460 -7 2411 82 0 0 chr1 241582731 241583024 -1081329 - AluY SINE Alu -18 293 1 496 223 136 0 chr1 241583027 241583130 -1081223 - FLAM_A SINE Alu -13 129 13 2912 142 66 70 chr1 241583527 241583702 -1080651 - MER39B LTR ERV1 -1 652 478 2384 97 0 3 chr1 241583702 241584001 -1080352 - AluSg SINE Alu -11 299 2 2912 142 66 70 chr1 241584001 241584478 -1079875 - MER39B LTR ERV1 -175 478 3 2135 127 7 7 chr1 241584739 241585039 -1079314 - AluSx SINE Alu -12 300 1 1367 210 65 7 chr1 241585466 241585635 -1078718 + AluJo SINE Alu 1 196 -116 2274 119 3 0 chr1 241585635 241585930 -1078423 - AluSx SINE Alu -16 296 1 1367 210 65 7 chr1 241585930 241586051 -1078302 + AluJo SINE Alu 196 308 -4 240 139 47 0 chr1 241586196 241586239 -1078114 + Tigger4(Zombi) DNA MER2_type 74 118 -2613 281 212 0 0 chr1 241586249 241586315 -1078038 + Tigger4(Zombi) DNA MER2_type 2532 2597 -134 288 190 59 45 chr1 241586315 241586568 -1077785 + AluJo SINE Alu 1 295 -7 * 823 164 0 0 chr1 241586558 241586704 -1077649 + Tigger4(Zombi) DNA MER2_type 2586 2731 0 1271 183 121 7 chr1 241586704 241586994 -1077359 - MLT1A1 LTR MaLR -32 333 11 1820 161 3 16 chr1 241587027 241587331 -1077022 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr1 241587451 241587472 -1076881 + GC_rich Low_complexity Low_complexity 1 21 0 2524 82 0 0 chr1 241588868 241589172 -1075181 - AluSg SINE Alu -6 304 1 548 176 0 0 chr1 241589398 241589489 -1074864 - MER41A LTR ERV1 0 554 464 837 138 14 0 chr1 241589584 241589722 -1074631 - LTR49-int LTR ERV1 -2996 3335 3196 2185 128 0 3 chr1 241589722 241590020 -1074333 + AluJb SINE Alu 1 297 -15 1538 193 0 52 chr1 241590195 241590229 -1074124 + AluJo SINE Alu 1 35 -277 2217 127 36 33 chr1 241590229 241590592 -1073761 + THE1B LTR MaLR 1 364 0 1538 193 0 52 chr1 241590592 241590884 -1073469 + AluJo SINE Alu 35 310 -2 926 128 105 102 chr1 241590884 241591011 -1073342 - LTR49-int LTR ERV1 -3446 2885 2760 2186 140 0 13 chr1 241591011 241591188 -1073165 - AluSx SINE Alu -2 310 137 2268 115 0 19 chr1 241591188 241591502 -1072851 - AluSg SINE Alu -2 308 1 2186 140 0 13 chr1 241591502 241591638 -1072715 - AluSx SINE Alu -175 137 1 926 128 105 102 chr1 241591638 241591776 -1072577 - LTR49-int LTR ERV1 -3571 2760 2619 1022 203 0 20 chr1 241591854 241592051 -1072302 - LTR49-int LTR ERV1 -3695 2636 2444 903 277 27 22 chr1 241592160 241592453 -1071900 - LTR49-int LTR ERV1 -3985 2346 2076 1460 150 30 9 chr1 241592453 241592686 -1071667 + AluJb SINE Alu 1 238 -74 1577 215 129 92 chr1 241592688 241593395 -1070958 + LTR1B LTR ERV1 3 735 -91 2347 125 0 0 chr1 241593711 241594023 -1070330 + AluSx SINE Alu 1 312 0 543 313 34 10 chr1 241594781 241594989 -1069364 + Harlequin LTR ERV1 776 988 -6797 1440 316 51 45 chr1 241595197 241596804 -1067549 + Harlequin LTR ERV1 954 2991 -4558 1957 122 35 14 chr1 241596804 241597091 -1067262 - AluSq SINE Alu -20 293 1 1965 122 3 48 chr1 241597103 241597439 -1066914 - LTR19C LTR ERV1 -364 415 95 916 349 25 8 chr1 241597492 241597979 -1066374 + Harlequin LTR ERV1 5269 5763 -2022 351 293 8 8 chr1 241598190 241598315 -1066038 + Harlequin LTR ERV1 3029 4857 -1792 1605 323 34 53 chr1 241598708 241599941 -1064412 + Harlequin LTR ERV1 6439 7647 -138 295 190 0 0 chr1 241600577 241600635 -1063718 + AluJb SINE Alu 238 295 -7 1819 194 28 58 chr1 241600636 241601068 -1063285 - LTR49-int LTR ERV1 -4243 2088 1670 296 269 10 29 chr1 241601654 241601758 -1062595 - LTR49-int LTR ERV1 -4940 1391 1290 302 269 15 0 chr1 241601819 241601886 -1062467 - tRNA-Glu-GAG tRNA tRNA 0 75 8 255 240 0 0 chr1 241601895 241601945 -1062408 - LTR49-int LTR ERV1 -5129 1202 1153 346 237 4 81 chr1 241601946 241602083 -1062270 - L1MC4 LINE L1 -1339 6983 1948 950 148 12 18 chr1 241602205 241602374 -1061979 - AluSx SINE Alu -142 170 3 2126 80 0 4 chr1 241602588 241602852 -1061501 + AluSg SINE Alu 1 263 -47 203 30 0 61 chr1 241602853 241602886 -1061467 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 382 143 0 0 chr1 241602909 241602972 -1061381 + AluS SINE Alu 14 76 -227 753 126 0 0 chr1 241602978 241603089 -1061264 + AluSg/x SINE Alu 190 300 -9 3640 117 15 0 chr1 241603207 241603753 -1060600 + MER41A LTR ERV1 1 554 0 564 202 0 0 chr1 241604240 241604354 -1059999 - AluSg/x SINE Alu 0 301 188 2002 133 75 6 chr1 241604356 241604717 -1059636 + LTR23 LTR ERV1 41 426 -11 482 229 33 49 chr1 241604873 241604970 -1059383 + L1MB1 LINE L1 5730 5824 -344 2526 48 3 0 chr1 241604970 241605262 -1059091 + AluY SINE Alu 1 293 -18 482 229 33 49 chr1 241605262 241605347 -1059006 + L1MB1 LINE L1 5824 5909 -259 2242 105 3 0 chr1 241605347 241605642 -1058711 + AluSc SINE Alu 1 296 -13 671 149 43 21 chr1 241605654 241605795 -1058558 + LTR48B LTR ERV1 501 644 0 831 251 19 33 chr1 241605797 241605921 -1058432 + LTR48B-int LTR ERV1 1 122 -6209 4859 54 3 0 chr1 241605921 241606510 -1057843 + LTR10C LTR ERV1 1 591 0 831 251 19 33 chr1 241606510 241606600 -1057753 + LTR48B-int LTR ERV1 122 212 -6119 641 202 0 0 chr1 241606617 241606726 -1057627 - AluJb SINE Alu -43 269 161 960 153 32 37 chr1 241606860 241606975 -1057378 - AluJo SINE Alu -123 189 74 3699 161 11 11 chr1 241606975 241607610 -1056743 - MER41B LTR ERV1 0 635 1 960 153 32 37 chr1 241607610 241607684 -1056669 - AluJo SINE Alu -238 74 1 2051 174 70 101 chr1 241607685 241607980 -1056373 + LTR48B-int LTR ERV1 199 502 -5829 2661 101 3 3 chr1 241607980 241608335 -1056018 - THE1A LTR MaLR 0 355 1 11632 90 23 8 chr1 241608335 241609650 -1054703 - THE1A-int LTR MaLR 0 1580 237 1938 120 0 0 chr1 241609650 241609916 -1054437 + AluSx SINE Alu 1 266 -46 11632 90 23 8 chr1 241609916 241610157 -1054196 - THE1A-int LTR MaLR -1343 237 1 2765 82 3 3 chr1 241610157 241610512 -1053841 - THE1A LTR MaLR 0 355 1 2051 174 70 101 chr1 241610512 241610809 -1053544 + LTR48B-int LTR ERV1 500 774 -5557 2227 103 7 7 chr1 241610809 241611101 -1053252 - AluSx SINE Alu -20 292 1 2051 174 70 101 chr1 241611101 241611147 -1053206 + LTR48B-int LTR ERV1 774 820 -5511 2359 78 0 0 chr1 241611169 241611481 -1052872 - AluY SINE Alu 0 312 1 842 149 77 189 chr1 241611606 241611724 -1052629 - L1 LINE L1 -985 5161 5031 1817 184 3 16 chr1 241611724 241612039 -1052314 - AluJo SINE Alu -1 311 1 842 149 77 189 chr1 241612039 241612349 -1052004 - L1 LINE L1 -1115 5031 4781 883 104 0 15 chr1 241612397 241612531 -1051822 - FLAM_C SINE Alu 0 133 2 2221 112 0 14 chr1 241612602 241612897 -1051456 - AluSg SINE Alu -17 293 3 280 321 18 18 chr1 241613117 241613226 -1051127 - MIR SINE MIR -6 256 148 212 237 153 0 chr1 241613348 241613407 -1050946 - MIR SINE MIR -100 162 95 187 265 0 0 chr1 241615026 241615060 -1049293 - L2 LINE L2 -99 3173 3140 550 313 71 5 chr1 241615190 241615388 -1048965 + MIR SINE MIR 51 261 -1 1992 87 8 15 chr1 241615433 241615732 -1048621 - AluSp SINE Alu 0 318 22 290 281 50 66 chr1 241615948 241616069 -1048284 - MIR3 SINE MIR -5 203 85 2229 116 0 0 chr1 241616275 241616569 -1047784 - AluSx SINE Alu -18 294 1 4219 191 35 18 chr1 241617063 241617088 -1047265 - L1MB2 LINE L1 -22 6149 6126 189 0 0 0 chr1 241617088 241617109 -1047244 + (TA)n Simple_repeat Simple_repeat 2 22 0 2353 62 10 7 chr1 241617109 241617399 -1046954 - AluSp SINE Alu -22 291 1 4219 191 35 18 chr1 241617399 241618376 -1045977 - L1MB2 LINE L1 -45 6126 5126 2170 116 3 10 chr1 241618376 241618670 -1045683 + AluSq SINE Alu 1 292 -21 4219 191 35 18 chr1 241618670 241618700 -1045653 - L1MB2 LINE L1 -1045 5126 5098 820 150 0 0 chr1 241619291 241619411 -1044942 + FLAM_A SINE Alu 8 127 -15 347 345 63 15 chr1 241619480 241619686 -1044667 - MIR SINE MIR -38 224 9 808 205 7 0 chr1 241619809 241619960 -1044393 + FRAM SINE Alu 12 163 -13 2154 144 0 0 chr1 241620041 241620339 -1044014 + AluJo SINE Alu 1 298 -14 530 267 35 17 chr1 241620485 241620657 -1043696 + MER5B DNA MER1_type 3 177 -1 1781 183 26 9 chr1 241624938 241625282 -1039071 - MLT1A1 LTR MaLR -13 352 3 229 328 31 0 chr1 241626322 241626386 -1037967 + MER5A DNA MER1_type 47 112 -77 649 214 16 0 chr1 241626431 241626557 -1037796 + AluJo SINE Alu 5 132 -180 912 163 21 0 chr1 241626601 241626742 -1037611 + AluJo SINE Alu 117 260 -52 200 242 63 53 chr1 241626744 241626839 -1037514 - MER5B DNA MER1_type -32 146 51 226 152 0 0 chr1 241626842 241626888 -1037465 - Alu SINE Alu 0 300 255 2500 198 50 57 chr1 241626999 241627099 -1037254 + LTR8A LTR ERV1 35 134 -593 4696 125 14 13 chr1 241627099 241627789 -1036564 + LTR8 LTR ERV1 1 691 0 2500 198 50 57 chr1 241627789 241628386 -1035967 + LTR8A LTR ERV1 134 727 0 294 287 98 0 chr1 241628502 241628624 -1035729 + MIR SINE MIR 72 205 -57 555 90 0 0 chr1 241628796 241628874 -1035479 + L1PA5 LINE L1 6073 6150 -4 194 284 0 45 chr1 241628905 241628972 -1035381 + MIR SINE MIR 121 184 -78 2065 222 67 67 chr1 241628973 241629717 -1034636 + MER21B LTR ERV1 1 744 -119 4387 80 4 0 chr1 241629769 241630321 -1034032 - MER41A LTR ERV1 0 554 1 564 172 17 0 chr1 241630553 241630669 -1033684 + MLT1B LTR MaLR 154 271 -119 232 329 80 44 chr1 241631198 241631335 -1033018 - L2 LINE L2 -18 3254 3113 2179 109 26 0 chr1 241631422 241631726 -1032627 - AluSx SINE Alu 0 312 1 2890 128 14 0 chr1 241631907 241632329 -1032024 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr1 241632514 241632537 -1031816 + AT_rich Low_complexity Low_complexity 1 23 0 527 125 37 59 chr1 241632537 241632673 -1031680 - L1MA7 LINE L1 0 6291 6159 1214 194 74 56 chr1 241632695 241632979 -1031374 - AluJo SINE Alu -13 289 1 2121 121 7 0 chr1 241633003 241633315 -1031038 - AluSq SINE Alu 0 314 1 19198 96 16 41 chr1 241633318 241634160 -1030193 - HUERS-P1 LTR ERV1 -3326 2937 2076 2194 118 3 3 chr1 241634160 241634464 -1029889 + AluSg SINE Alu 3 306 -4 19198 96 16 41 chr1 241634464 241634881 -1029472 - HUERS-P1 LTR ERV1 -4187 2076 1650 2381 88 3 7 chr1 241634881 241635189 -1029164 + AluSp SINE Alu 1 307 -6 19198 96 16 41 chr1 241635189 241636940 -1027413 - HUERS-P1 LTR ERV1 -4613 1650 1 4918 111 15 4 chr1 241636940 241637624 -1026729 - LTR8 LTR ERV1 0 691 1 245 164 82 0 chr1 241637894 241637955 -1026398 - L1MA7 LINE L1 -4 6287 6222 699 209 8 15 chr1 241638007 241638141 -1026212 + FLAM_A SINE Alu 1 133 0 2288 123 3 0 chr1 241638198 241638508 -1025845 + AluSx SINE Alu 1 311 -1 813 196 42 80 chr1 241638596 241638743 -1025610 + Charlie1b DNA MER1_type 6 157 -2604 1627 208 13 0 chr1 241638743 241639041 -1025312 - AluJo SINE Alu -10 302 1 813 196 42 80 chr1 241639041 241639319 -1025034 + Charlie1b DNA MER1_type 157 523 0 242 263 66 40 chr1 241639358 241639434 -1024919 + MIR3 SINE MIR 109 186 -22 1879 205 148 0 chr1 241639695 241639866 -1024487 - MLT2B2 LTR ERVL -11 504 360 5080 96 0 24 chr1 241639866 241640424 -1023929 - LTR8 LTR ERV1 0 691 152 2489 74 0 0 chr1 241640424 241640723 -1023630 + AluY SINE Alu 1 299 -12 5080 96 0 24 chr1 241640723 241640872 -1023481 - LTR8 LTR ERV1 -539 152 1 1879 205 148 0 chr1 241640872 241641139 -1023214 - MLT2B2 LTR ERVL -155 360 1 193 247 62 37 chr1 241641283 241641364 -1022989 - L3 LINE CR1 -17 1560 1478 1425 178 3 99 chr1 241641626 241641667 -1022686 - MLT1A1 LTR MaLR -24 341 298 1733 189 7 3 chr1 241641667 241641968 -1022385 - AluJo SINE Alu -10 302 1 1425 178 3 99 chr1 241641968 241642291 -1022062 - MLT1A1 LTR MaLR -67 298 12 21 0 0 0 chr1 241642817 241642838 -1021515 + AT_rich Low_complexity Low_complexity 1 21 0 1658 181 0 38 chr1 241643091 241643405 -1020948 - AluJo SINE Alu -10 302 1 671 233 45 45 chr1 241643415 241643436 -1020917 - MER31B LTR ERV1 -2 464 444 1696 163 14 21 chr1 241643436 241643725 -1020628 + AluJb SINE Alu 3 289 -23 671 233 45 45 chr1 241643725 241643926 -1020427 - MER31B LTR ERV1 -21 445 242 2323 192 17 2 chr1 241643948 241644411 -1019942 + MER31A LTR ERV1 16 485 0 1306 174 7 36 chr1 241644411 241644684 -1019669 - MER31B LTR ERV1 -201 265 1 1749 178 31 13 chr1 241645548 241645902 -1018451 - MLT1A1 LTR MaLR 0 365 4 1826 202 14 11 chr1 241646031 241646388 -1017965 - MLT1A1 LTR MaLR -7 358 1 716 157 9 0 chr1 241646679 241646794 -1017559 + AluJo/FLAM SINE Alu 1 116 -196 1272 109 0 0 chr1 241646795 241647040 -1017313 - AluSc SINE Alu 0 374 130 879 213 102 55 chr1 241647141 241647484 -1016869 - MLT1D LTR MaLR -54 451 93 902 204 5 41 chr1 241647507 241647728 -1016625 - MSTD LTR MaLR 0 396 184 838 230 0 0 chr1 241647728 241647893 -1016460 - FRAM SINE Alu 0 40 1 624 98 0 0 chr1 241647893 241647975 -1016378 - AluJ/FLAM SINE Alu -222 90 9 912 200 0 11 chr1 241647975 241648160 -1016193 - MSTD LTR MaLR -213 183 1 224 328 0 34 chr1 241648160 241648279 -1016074 + (CACGC)n Simple_repeat Simple_repeat 5 119 0 311 321 0 38 chr1 241648303 241648487 -1015866 + (CACGC)n Simple_repeat Simple_repeat 3 179 0 309 319 0 43 chr1 241648595 241648780 -1015573 + (CACGT)n Simple_repeat Simple_repeat 3 179 0 244 276 0 26 chr1 241648805 241648881 -1015472 - MLT1D LTR MaLR -548 78 5 506 247 65 9 chr1 241649095 241649347 -1015006 + Charlie4a DNA MER1_type 17 313 -195 241 273 13 0 chr1 241649373 241649450 -1014903 + Charlie4a DNA MER1_type 387 464 -44 1541 219 27 44 chr1 241650364 241650785 -1013568 - L1MB2 LINE L1 -62 6109 5693 414 214 114 60 chr1 241651010 241651211 -1013142 - Charlie8 DNA MER1_type -2141 276 65 2173 109 3 0 chr1 241651449 241651760 -1012593 + AluSx SINE Alu 1 312 0 1031 222 66 66 chr1 241652609 241652929 -1011424 - MLT1A1 LTR MaLR 0 365 46 21 0 0 0 chr1 241652930 241652951 -1011402 + AT_rich Low_complexity Low_complexity 1 21 0 794 185 7 13 chr1 241652956 241653107 -1011246 - AluJb SINE Alu -8 304 155 22 0 0 0 chr1 241653355 241653377 -1010976 + AT_rich Low_complexity Low_complexity 1 22 0 1723 150 4 4 chr1 241653569 241653849 -1010504 - AluJo SINE Alu -23 289 10 701 284 94 38 chr1 241654155 241654581 -1009772 + L1ME1 LINE L1 5698 6147 -19 * 4695 182 47 29 chr1 241654572 241654877 -1009476 - L1MA9 LINE L1 -38 6274 5976 1473 146 0 113 chr1 241654877 241655205 -1009148 - AluJb SINE Alu -21 291 1 4695 182 47 29 chr1 241655205 241656052 -1008301 - L1MA9 LINE L1 -336 5976 5097 1122 286 101 73 chr1 241656297 241656538 -1007815 - HAL1 LINE L1 -710 1797 1564 968 114 0 0 chr1 241656538 241656670 -1007683 - FLAM_C SINE Alu 0 133 2 1122 286 101 73 chr1 241656670 241657040 -1007313 - HAL1 LINE L1 -943 1564 1206 2248 68 0 3 chr1 241657040 241657334 -1007019 + AluY SINE Alu 19 311 0 1122 286 101 73 chr1 241657334 241657845 -1006508 - HAL1 LINE L1 -1301 1206 642 1486 168 39 4 chr1 241657894 241658065 -1006288 - AluJb SINE Alu -12 300 114 228 86 0 0 chr1 241658065 241658100 -1006253 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1486 168 39 4 chr1 241658100 241658208 -1006145 - AluJb SINE Alu -198 114 11 1466 122 4 35 chr1 241658785 241659014 -1005339 + Tigger2a DNA MER2_type 1 222 -212 245 264 100 9 chr1 241659116 241659226 -1005127 + L1ME LINE L1 5688 5807 -314 2018 198 55 40 chr1 241659335 241659790 -1004563 + MLT1C LTR MaLR 1 462 -5 709 87 17 0 chr1 241659955 241660070 -1004283 + (TGGA)n Simple_repeat Simple_repeat 1 117 0 2103 120 3 0 chr1 241660346 241660646 -1003707 + AluSx SINE Alu 4 304 -8 210 301 90 19 chr1 241660682 241660838 -1003515 - L2 LINE L2 -1216 2098 1932 387 174 18 73 chr1 241660856 241660965 -1003388 + MLT1E2 LTR MaLR 507 609 -17 373 302 169 17 chr1 241661091 241661392 -1002961 + L2 LINE L2 2922 3268 -45 260 344 186 18 chr1 241661635 241661920 -1002433 + L3 LINE CR1 559 891 -686 327 351 35 6 chr1 241661988 241662159 -1002194 + MIR SINE MIR 64 239 -23 330 309 148 34 chr1 241662216 241662452 -1001901 + L3 LINE CR1 921 1183 -394 1124 118 38 16 chr1 241662709 241662895 -1001458 - AluJb SINE Alu -40 272 83 927 111 0 0 chr1 241662964 241663124 -1001229 + AluY SINE Alu 154 311 0 187 244 51 13 chr1 241663370 241663448 -1000905 + L2 LINE L2 2550 2630 -684 235 306 14 0 chr1 241663573 241663645 -1000708 + L2 LINE L2 2633 2705 -609 2051 150 20 50 chr1 241663720 241663816 -1000537 - L1PB4 LINE L1 -4 6152 6055 1949 102 51 0 chr1 241663816 241664091 -1000262 - AluSg SINE Alu -21 289 1 2051 150 20 50 chr1 241664091 241664393 -999960 - L1PB4 LINE L1 -101 6055 5766 207 171 0 0 chr1 241664726 241664761 -999592 + (TGG)n Simple_repeat Simple_repeat 1 35 0 1302 154 0 98 chr1 241664828 241665143 -999210 + AluJo SINE Alu 24 310 0 754 171 20 75 chr1 241717061 241717260 -947093 + MER53 DNA DNA 2 189 0 1245 125 14 36 chr1 241717615 241717881 -946472 - MER39B LTR ERV1 -155 552 252 2464 65 0 0 chr1 241718006 241718312 -946041 + AluY SINE Alu 1 306 -5 192 340 78 35 chr1 241718829 241718970 -945383 - L2 LINE L2 -191 3081 2935 3568 131 52 19 chr1 241719244 241719876 -944477 - MER39B LTR ERV1 0 653 1 341 304 72 82 chr1 241720227 241720420 -943933 - L1M4 LINE L1 -1438 4708 4515 2204 96 0 0 chr1 241720420 241720702 -943651 - AluSg SINE Alu -26 284 3 341 304 72 82 chr1 241720702 241721090 -943263 - L1M4 LINE L1 -1631 4515 4133 967 184 0 0 chr1 241721257 241721415 -942938 - FAM SINE Alu -17 158 1 528 278 41 25 chr1 241721420 241721665 -942688 - L1M4 LINE L1 -2185 3961 3713 21 36 0 0 chr1 241721681 241721709 -942644 + AT_rich Low_complexity Low_complexity 1 28 0 390 301 93 67 chr1 241722047 241722465 -941888 - L1M4 LINE L1 -2982 3164 2736 216 0 0 0 chr1 241724142 241724166 -940187 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 498 347 46 21 chr1 241724419 241724704 -939649 + L2 LINE L2 2668 2959 -355 269 270 66 36 chr1 241726040 241726055 -938298 - L1MA10 LINE L1 -3 6331 6317 659 176 293 16 chr1 241726055 241726243 -938110 - L1ME1 LINE L1 -6 6160 5921 409 279 143 34 chr1 241726250 241726515 -937838 - L1M4 LINE L1 -3002 3144 2851 21 0 0 0 chr1 241726529 241726550 -937803 + AT_rich Low_complexity Low_complexity 1 21 0 216 296 25 12 chr1 241726615 241726696 -937657 + MIR SINE MIR 77 158 -104 2073 184 5 8 chr1 241727271 241727658 -936695 - MLT1B LTR MaLR 0 390 5 984 173 34 42 chr1 241728246 241728483 -935870 - L1MA9 LINE L1 0 6312 6078 1803 179 0 3 chr1 241728592 241728904 -935449 - AluSx SINE Alu -1 311 1 1615 148 0 7 chr1 241728916 241729206 -935147 - L1MA4 LINE L1 -13 6287 6000 2739 168 9 26 chr1 241729501 241730036 -934317 - LTR39 LTR ERV1 0 783 258 684 187 36 0 chr1 241730035 241730174 -934179 - LTR39 LTR ERV1 -635 148 5 * 2004 118 3 40 chr1 241730477 241730798 -933555 - AluSc SINE Alu 0 309 1 2154 110 0 3 chr1 241731590 241731882 -932471 - AluSg SINE Alu -19 291 1 708 172 8 8 chr1 241731926 241732054 -932299 + FLAM_A SINE Alu 10 137 -5 1041 172 23 27 chr1 241732183 241732404 -931949 - L1MA9 LINE L1 -5 6307 6088 1744 167 12 3 chr1 241732404 241732728 -931625 + L1P LINE L1 4877 5203 -943 2831 86 5 0 chr1 241732830 241733227 -931126 + L1PA13 LINE L1 5765 6163 0 1880 276 101 19 chr1 241733361 241734301 -930052 - L1MC4a LINE L1 -1538 6270 5254 363 323 36 5 chr1 241734519 241734714 -929639 - L1MC4a LINE L1 -1127 5019 4819 2782 211 35 8 chr1 241735049 241735707 -928646 - L1MD2 LINE L1 -3 6616 5941 247 174 0 29 chr1 241735710 241735779 -928574 + (TA)n Simple_repeat Simple_repeat 2 68 0 304 204 21 75 chr1 241735789 241735882 -928471 + L1MC4 LINE L1 6614 6701 -1341 237 282 47 0 chr1 241735911 241735996 -928357 + L1MC4 LINE L1 6614 6702 -1340 368 182 10 78 chr1 241736038 241736230 -928123 + (TA)n Simple_repeat Simple_repeat 2 180 0 1355 239 89 5 chr1 241736240 241736621 -927732 - L1MD2 LINE L1 -680 5939 5527 * 1797 248 129 47 chr1 241736588 241737176 -927177 - L1MD2 LINE L1 -1886 4520 3832 1474 134 5 0 chr1 241737176 241737417 -926936 + AluSg/x SINE Alu 66 307 0 1797 248 129 47 chr1 241737417 241737709 -926644 - L1MD2 LINE L1 -2574 3832 3566 1593 90 129 3 chr1 241737876 241738097 -926256 + MER1A DNA MER1_type 144 336 -2370 432 51 0 0 chr1 241738097 241738156 -926197 + (TA)n Simple_repeat Simple_repeat 2 60 0 1593 90 129 3 chr1 241738156 241738276 -926077 + MER1A DNA MER1_type 336 533 0 1000 290 105 24 chr1 241738288 241738753 -925600 - L1MD2 LINE L1 -5892 517 15 292 303 30 0 chr1 241738870 241739002 -925351 - L1MC4a LINE L1 -1809 4337 4202 23 0 0 0 chr1 241740399 241740422 -923931 + AT_rich Low_complexity Low_complexity 1 23 0 7439 30 3 1 chr1 241740545 241742182 -922171 + L1PA3 LINE L1 4517 6155 0 1565 241 20 55 chr1 241742618 241743112 -921241 + MLT1D LTR MaLR 1 477 -28 28 79 0 0 chr1 241743163 241743226 -921127 + AT_rich Low_complexity Low_complexity 1 63 0 1575 138 53 10 chr1 241743722 241744026 -920327 - L1MA4 LINE L1 -8 6292 5976 3915 230 98 26 chr1 241744048 241747350 -917003 + L1MA8 LINE L1 2488 6122 -169 192 40 0 0 chr1 241747483 241747508 -916845 + (TG)n Simple_repeat Simple_repeat 2 26 0 524 282 78 32 chr1 241748079 241748474 -915879 + L1MDa LINE L1 1615 2081 -4561 180 111 0 0 chr1 241748773 241748800 -915553 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 267 278 66 20 chr1 241748996 241749147 -915206 + L1MDa LINE L1 2677 2834 -3706 479 288 85 0 chr1 241749306 241749483 -914870 - LTR50 LTR ERVL -582 213 22 737 245 60 118 chr1 241750354 241750734 -913619 + MER57A LTR ERV1 46 403 0 324 0 0 0 chr1 241751337 241751373 -912980 + (CA)n Simple_repeat Simple_repeat 1 36 0 513 243 18 0 chr1 241751943 241752054 -912299 + MER81 DNA DNA 1 113 -1 234 412 0 8 chr1 241752614 241752745 -911608 + MIR SINE MIR 28 157 -105 2294 83 7 0 chr1 241752749 241753038 -911315 - AluSp SINE Alu -22 291 1 1751 150 55 0 chr1 241753591 241753884 -910469 - AluJb SINE Alu -3 309 1 21 71 0 0 chr1 241754378 241754420 -909933 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 241754443 241754465 -909888 + AT_rich Low_complexity Low_complexity 1 22 0 288 283 59 53 chr1 241754589 241754741 -909612 - MIR SINE MIR 0 262 110 293 365 66 12 chr1 241756019 241756260 -908093 + MIR SINE MIR 5 258 -4 667 181 15 30 chr1 241756687 241756820 -907533 + FLAM_C SINE Alu 3 133 0 188 238 16 0 chr1 241757432 241757495 -906858 + (TA)n Simple_repeat Simple_repeat 2 65 0 246 337 31 51 chr1 241759368 241759564 -904789 - MLT1J LTR MaLR -85 426 235 232 88 0 0 chr1 241760040 241760074 -904279 + L1M2 LINE L1 5745 5778 -522 268 232 33 39 chr1 241760112 241760293 -904060 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 * 320 242 28 22 chr1 241760188 241760366 -903987 + (TA)n Simple_repeat Simple_repeat 1 179 0 282 312 0 0 chr1 241760490 241760567 -903786 + (CATA)n Simple_repeat Simple_repeat 3 79 0 635 212 45 28 chr1 241760915 241761094 -903259 - L1MA8 LINE L1 -10 6281 6100 301 178 14 0 chr1 241761163 241761236 -903117 + L1MDa LINE L1 2092 2165 -4375 581 250 51 22 chr1 241761249 241761612 -902741 + L1MDa LINE L1 2356 2771 -3892 240 86 0 0 chr1 241761855 241761890 -902463 + (CA)n Simple_repeat Simple_repeat 2 36 0 601 201 29 0 chr1 241761890 241762029 -902324 - L1MA7 LINE L1 -31 6260 6118 2042 128 3 3 chr1 241762230 241762527 -901826 - AluSx SINE Alu -15 297 1 1350 105 10 5 chr1 241762606 241762806 -901547 + L1PA10 LINE L1 5965 6165 -3 255 291 18 0 chr1 241762838 241762948 -901405 + (TA)n Simple_repeat Simple_repeat 2 113 0 1911 269 81 34 chr1 241765693 241766971 -897382 + L1MA8 LINE L1 2262 3480 -4085 2400 63 0 13 chr1 241766993 241767296 -897057 - AluY SINE Alu -10 301 3 11651 195 56 19 chr1 241767315 241768727 -895626 + L1MA8 LINE L1 3628 4986 -2724 6834 57 14 1 chr1 241768727 241770051 -894302 + L1PA7 LINE L1 4812 6154 0 11651 195 56 19 chr1 241770051 241772562 -891791 + L1MA8 LINE L1 4986 7710 0 3340 228 22 25 chr1 241772575 241773470 -890883 + L1MC/D LINE L1 4349 5245 -1019 696 209 0 15 chr1 241773470 241773604 -890749 + FLAM_C SINE Alu 2 133 0 3340 228 22 25 chr1 241773604 241773638 -890715 + L1MC/D LINE L1 5245 5278 -986 2341 109 3 0 chr1 241773638 241773950 -890403 + AluSp SINE Alu 1 313 0 3340 228 22 25 chr1 241773950 241774197 -890156 + L1MC/D LINE L1 5278 5520 -744 1754 141 20 7 chr1 241774197 241774495 -889858 + L1MC1 LINE L1 6013 6322 -11 904 216 0 0 chr1 241774500 241774667 -889686 + FAM SINE Alu 2 168 -7 23 0 0 0 chr1 241775422 241775445 -888908 + AT_rich Low_complexity Low_complexity 1 23 0 6519 49 3 167 chr1 241776086 241777282 -887071 - SVA Other Other -385 1001 2 242 28 0 28 chr1 241777286 241777322 -887031 + (GGGAGA)n Simple_repeat Simple_repeat 2 36 0 1943 155 68 32 chr1 241778040 241778079 -886274 - MLT2D LTR ERVL 0 414 378 198 0 0 0 chr1 241778079 241778101 -886252 + (TG)n Simple_repeat Simple_repeat 1 22 0 1943 155 68 32 chr1 241778101 241778461 -885892 - MLT2D LTR ERVL -36 378 1 237 179 90 15 chr1 241778566 241778633 -885720 - MER104 DNA Tc2 -87 93 22 201 246 18 0 chr1 241778648 241778705 -885648 + (CAT)n Simple_repeat Simple_repeat 3 60 0 416 91 0 0 chr1 241779532 241779622 -884731 - Alu SINE Alu 0 315 226 1693 163 3 7 chr1 241779624 241779919 -884434 - AluJo SINE Alu -15 297 4 28 91 0 0 chr1 241781015 241781092 -883261 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr1 241782051 241782073 -882280 + AT_rich Low_complexity Low_complexity 1 22 0 1883 118 209 9 chr1 241782773 241783122 -881231 + MSTA LTR MaLR 10 428 0 3235 227 43 5 chr1 241783504 241784341 -880012 + L1P LINE L1 4492 5360 -786 2111 128 0 0 chr1 241784347 241784636 -879717 + AluSc SINE Alu 1 289 -20 26670 121 14 78 chr1 241784659 241789784 -874569 + L1P LINE L1 12 4810 -1336 2573 155 5 2 chr1 241789944 241790371 -873982 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr1 241790664 241790686 -873667 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 241790723 241790755 -873598 + AT_rich Low_complexity Low_complexity 1 32 0 1029 297 101 11 chr1 241791121 241791575 -872778 - L2 LINE L2 -537 2777 2283 459 292 35 41 chr1 241791594 241791909 -872444 + L1ME LINE L1 5265 5577 -585 582 286 43 130 chr1 241791963 241792442 -871911 + L2 LINE L2 2772 3189 -124 4686 34 0 2 chr1 241792442 241793002 -871351 - L1PA5 LINE L1 -2 6152 5594 582 286 43 130 chr1 241793002 241793118 -871235 + L2 LINE L2 3189 3313 0 246 248 88 24 chr1 241793271 241793396 -870957 - HAL1 LINE L1 -984 1523 1391 23 0 0 0 chr1 241793736 241793759 -870594 + AT_rich Low_complexity Low_complexity 1 23 0 937 204 0 0 chr1 241794514 241794681 -869672 - FAM SINE Alu -7 168 2 1738 144 20 7 chr1 241794686 241794992 -869361 - L1MC1 LINE L1 -11 6322 6013 3340 228 22 26 chr1 241794994 241795231 -869122 - L1MC1 LINE L1 -744 5402 5166 2302 115 3 0 chr1 241795231 241795543 -868810 - AluSp SINE Alu 0 313 1 3340 228 22 26 chr1 241795543 241795577 -868776 - L1MC1 LINE L1 -980 5166 5133 696 209 0 15 chr1 241795577 241795711 -868642 - FLAM_C SINE Alu 0 133 2 3340 228 22 26 chr1 241795711 241796606 -867747 - L1MC1 LINE L1 -1013 5133 4349 11608 196 56 19 chr1 241796619 241799130 -865223 - L1MA8 LINE L1 0 7710 4987 6859 56 21 2 chr1 241799130 241800454 -863899 - L1PA7 LINE L1 0 6154 4812 11608 196 56 19 chr1 241800454 241801867 -862486 - L1MA8 LINE L1 -2723 4987 3628 2434 62 0 13 chr1 241801886 241802193 -862160 + AluY SINE Alu 3 305 -6 1980 270 81 34 chr1 241802215 241803495 -860858 - L1MA8 LINE L1 -4085 3480 2262 271 282 18 0 chr1 241806237 241806347 -858006 + (TA)n Simple_repeat Simple_repeat 2 113 0 1339 105 10 5 chr1 241806379 241806579 -857774 - L1PA10 LINE L1 -3 6165 5965 2010 128 3 3 chr1 241806658 241806955 -857398 + AluSx SINE Alu 1 297 -15 660 208 27 0 chr1 241807145 241807294 -857059 + L1MA7 LINE L1 6108 6260 -31 240 86 0 0 chr1 241807294 241807329 -857024 + (TG)n Simple_repeat Simple_repeat 2 36 0 621 241 45 21 chr1 241807572 241807935 -856418 - L1MDa LINE L1 -3844 2696 2356 310 178 14 0 chr1 241807948 241808021 -856332 - L1MDa LINE L1 -4375 2165 2092 661 207 45 28 chr1 241808090 241808269 -856084 + L1MA8 LINE L1 6100 6281 -10 282 312 0 0 chr1 241808617 241808694 -855659 + (TATG)n Simple_repeat Simple_repeat 3 79 0 309 241 29 23 chr1 241808818 241809068 -855285 + (TA)n Simple_repeat Simple_repeat 1 251 0 234 88 0 0 chr1 241809106 241809140 -855213 - L1M1 LINE L1 -524 5778 5745 242 337 31 51 chr1 241809616 241809812 -854541 + MLT1J LTR MaLR 235 426 -85 216 200 0 0 chr1 241811685 241811730 -852623 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 655 181 15 30 chr1 241812362 241812495 -851858 - FLAM_C SINE Alu 0 133 3 291 395 53 8 chr1 241812922 241813165 -851188 - MIR SINE MIR -4 258 5 290 283 59 53 chr1 241814443 241814595 -849758 + MIR SINE MIR 110 262 0 22 0 0 0 chr1 241814719 241814741 -849612 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr1 241814764 241814806 -849547 + AT_rich Low_complexity Low_complexity 1 42 0 1706 154 55 0 chr1 241815300 241815593 -848760 + AluJb SINE Alu 1 309 -3 2282 80 7 0 chr1 241816146 241816435 -847918 + AluSp SINE Alu 1 291 -22 234 412 0 8 chr1 241816439 241816570 -847783 - MIR SINE MIR -105 157 28 507 225 18 0 chr1 241817130 241817241 -847112 - MER81 DNA DNA -1 113 1 360 0 0 0 chr1 241817810 241817850 -846503 + (TG)n Simple_repeat Simple_repeat 1 40 0 737 245 60 118 chr1 241818453 241818833 -845520 - MER57A LTR ERV1 0 403 46 479 288 85 0 chr1 241819703 241819880 -844473 + LTR50 LTR ERVL 22 213 -582 493 313 78 27 chr1 241819945 241820316 -844037 - L1MDa LINE L1 -3612 2928 2539 180 111 0 0 chr1 241820386 241820413 -843940 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 528 274 83 37 chr1 241820712 241821107 -843246 - L1MDa LINE L1 -4561 1979 1615 192 40 0 0 chr1 241821677 241821702 -842651 + (CA)n Simple_repeat Simple_repeat 2 26 0 3938 236 125 31 chr1 241821835 241825135 -839218 - L1MA8 LINE L1 -169 6122 2488 1545 138 52 13 chr1 241825157 241825462 -838891 + L1MA4 LINE L1 5976 6292 -8 42966 30 21 1 chr1 241825497 241831528 -832825 + L1HS LINE L1 2 6155 0 28 79 0 0 chr1 241832011 241832074 -832279 + AT_rich Low_complexity Low_complexity 1 63 0 1543 251 16 51 chr1 241832125 241832619 -831734 - MLT1D LTR MaLR -28 477 1 7512 28 0 0 chr1 241833055 241834692 -829661 - L1PA3 LINE L1 0 6155 4517 23 0 0 0 chr1 241834815 241834838 -829515 + AT_rich Low_complexity Low_complexity 1 23 0 610 121 4 11 chr1 241836303 241836412 -827941 + L1MB2 LINE L1 6040 6150 -18 225 127 127 48 chr1 241836463 241836526 -827827 + L1M4 LINE L1 5175 5242 -904 41 48 0 0 chr1 241836527 241836589 -827764 + AT_rich Low_complexity Low_complexity 1 62 0 687 230 18 24 chr1 241836741 241836906 -827447 - FAM SINE Alu -8 167 4 276 308 35 56 chr1 241836943 241837040 -827313 + L1ME1 LINE L1 3428 3526 -2620 946 202 0 34 chr1 241837040 241837248 -827105 + L1PB4 LINE L1 5956 6156 0 276 308 35 56 chr1 241837248 241837436 -826917 + L1ME1 LINE L1 3526 3707 -2439 4017 44 2 8 chr1 241838395 241838923 -825430 - L1PA5 LINE L1 -753 5393 4869 6007 45 17 0 chr1 241838923 241839666 -824687 + L1PA5 LINE L1 5392 6153 -1 397 272 76 43 chr1 241839688 241839952 -824401 + L1ME1 LINE L1 5188 5454 -712 23 54 0 0 chr1 241840648 241840685 -823668 + AT_rich Low_complexity Low_complexity 1 37 0 1169 238 32 92 chr1 241841073 241841565 -822788 + L1ME1 LINE L1 5700 6162 -4 31 58 0 0 chr1 241841567 241841619 -822734 + AT_rich Low_complexity Low_complexity 1 52 0 23 54 0 0 chr1 241841747 241841784 -822569 + AT_rich Low_complexity Low_complexity 1 37 0 362 132 0 15 chr1 241843020 241843088 -821265 + (GA)n Simple_repeat Simple_repeat 1 67 0 1686 281 26 10 chr1 241843582 241844077 -820276 - MLT1D LTR MaLR -2 503 1 27 49 0 0 chr1 241844280 241844321 -820032 + AT_rich Low_complexity Low_complexity 1 41 0 180 217 0 0 chr1 241844424 241844470 -819883 + (TG)n Simple_repeat Simple_repeat 1 46 0 243 286 50 59 chr1 241844846 241844965 -819388 + L2 LINE L2 3196 3313 0 225 149 0 21 chr1 241845557 241845604 -818749 + HSMAR1 DNA Mariner 1242 1287 0 288 321 36 14 chr1 241845647 241845787 -818566 - MIR SINE MIR -1 261 119 465 351 53 13 chr1 241846467 241846695 -817658 - MIR SINE MIR -17 245 9 417 332 142 9 chr1 241846945 241847156 -817197 + MIR SINE MIR 2 240 -22 1504 120 69 0 chr1 241847300 241847561 -816792 - AluSg SINE Alu 0 308 32 4431 122 15 1 chr1 241848507 241849366 -814987 - L1PB1 LINE L1 -248 5903 5038 262 254 28 0 chr1 241849441 241849512 -814841 - L1ME3A LINE L1 -72 6098 6026 199 352 70 0 chr1 241849565 241849693 -814660 - MIR SINE MIR -69 193 57 454 295 48 39 chr1 241849717 241849924 -814429 - MER3 DNA MER1_type 0 209 1 2052 117 3 0 chr1 241850218 241850509 -813844 + AluSx SINE Alu 13 304 -8 635 181 27 75 chr1 241850515 241850703 -813650 - L1MD1 LINE L1 -164 6078 5900 2505 281 46 27 chr1 241851396 241852712 -811641 + L1ME2 LINE L1 4797 6154 -10 31 26 0 0 chr1 241852718 241852756 -811597 + AT_rich Low_complexity Low_complexity 1 38 0 215 350 0 0 chr1 241852947 241853007 -811346 - L2 LINE L2 -16 3297 3238 1025 163 40 40 chr1 241853993 241854158 -810195 - L1 LINE L1 -1624 4522 4358 379 0 0 0 chr1 241854158 241854200 -810153 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 2226 97 0 0 chr1 241854183 241854480 -809873 - AluSg SINE Alu -1 323 3 1025 163 40 40 chr1 241854480 241854564 -809789 - L1 LINE L1 -2067 4079 4271 261 0 0 0 chr1 241854741 241854770 -809583 + (CA)n Simple_repeat Simple_repeat 2 30 0 742 115 0 0 chr1 241854995 241855099 -809254 - AluY SINE Alu -205 106 3 207 291 117 10 chr1 241855124 241855227 -809126 + MIR SINE MIR 123 236 -26 206 280 27 0 chr1 241855467 241855542 -808811 + (TA)n Simple_repeat Simple_repeat 1 77 0 256 224 0 24 chr1 241855557 241855642 -808711 + (TA)n Simple_repeat Simple_repeat 2 84 0 313 312 86 38 chr1 241856056 241856242 -808111 - MIR SINE MIR -36 226 32 256 220 0 0 chr1 241857885 241857935 -806418 + L2 LINE L2 3218 3267 -5 22 35 0 0 chr1 241857991 241858020 -806333 + AT_rich Low_complexity Low_complexity 1 29 0 288 77 0 0 chr1 241858699 241858738 -805615 + (CA)n Simple_repeat Simple_repeat 1 39 0 317 368 81 6 chr1 241859846 241860020 -804333 - MIR SINE MIR -6 256 70 789 166 22 0 chr1 241861060 241861199 -803154 + L1PA15 LINE L1 6017 6158 -7 21 0 0 0 chr1 241861212 241861233 -803120 + AT_rich Low_complexity Low_complexity 1 21 0 2835 169 44 14 chr1 241861486 241862394 -801959 - L1M2 LINE L1 -615 5676 4732 922 182 43 0 chr1 241862395 241862582 -801771 - L1MA5A LINE L1 -7 6290 6096 1002 238 35 8 chr1 241862596 241862857 -801496 + Charlie1 DNA MER1_type 1913 2180 -581 3383 22 0 2 chr1 241862862 241863267 -801086 - L1PA4 LINE L1 -875 5271 4868 7419 28 5 1 chr1 241863267 241864152 -800201 + L1PA4 LINE L1 5262 6152 -3 485 183 110 32 chr1 241864285 241864504 -799849 + Charlie1 DNA MER1_type 2387 2622 -139 2506 214 25 50 chr1 241864535 241864947 -799406 + L1 LINE L1 4415 4836 -1310 798 102 42 0 chr1 241864947 241865065 -799288 + L1PA15 LINE L1 6035 6157 -8 2506 214 25 50 chr1 241865065 241865647 -798706 + L1 LINE L1 4836 5330 -816 246 182 0 0 chr1 241865653 241865697 -798656 - L1M2 LINE L1 -1399 4747 4704 1222 171 37 0 chr1 241865751 241865996 -798357 - L1M2 LINE L1 -1448 4698 4445 3061 247 239 19 chr1 241866010 241868075 -796278 - L1M3c LINE L1 -4516 2521 41 5319 225 38 46 chr1 241868079 241869651 -794702 + MER31-int LTR ERV1 2648 4205 -731 2478 57 0 3 chr1 241869665 241869965 -794388 + AluY SINE Alu 3 301 -10 333 328 98 20 chr1 241870572 241870776 -793577 - MIR SINE MIR -20 242 23 339 297 121 16 chr1 241871507 241871689 -792664 - L1MC/D LINE L1 -2354 5454 5254 465 227 57 87 chr1 241872194 241872423 -791930 + LTR56 LTR ERV1 8 229 -216 271 178 0 0 chr1 241872561 241872606 -791747 + L1PB4 LINE L1 6093 6137 -19 582 301 48 23 chr1 241873290 241873885 -790468 + L1ME LINE L1 4930 5570 -592 290 163 0 0 chr1 241873905 241873954 -790399 - L1PA13 LINE L1 -5369 1418 1370 588 204 30 8 chr1 241874165 241874297 -790056 - MER3 DNA MER1_type 0 2367 2233 399 232 88 16 chr1 241874299 241874424 -789929 - MER3 DNA MER1_type -41 168 35 213 39 0 0 chr1 241874841 241874867 -789486 + (TG)n Simple_repeat Simple_repeat 2 27 0 213 39 0 0 chr1 241875031 241875057 -789296 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 0 0 0 chr1 241876077 241876101 -788252 + AT_rich Low_complexity Low_complexity 1 24 0 1580 140 96 22 chr1 241877319 241877590 -786763 + AluSx SINE Alu 5 295 -17 689 176 0 29 chr1 241880222 241880358 -783995 + AluJb SINE Alu 3 134 -178 288 77 0 0 chr1 241881128 241881167 -783186 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 736 288 118 32 chr1 241882611 241882873 -781480 - L1MC/D LINE L1 -1492 4654 4416 1431 213 15 59 chr1 241882873 241883281 -781072 - MLT1B LTR MaLR 0 390 1 736 288 118 32 chr1 241883281 241883609 -780744 - L1MC/D LINE L1 -1730 4416 4013 586 253 16 22 chr1 241883661 241883861 -780492 - MER92B LTR ERV1 -31 561 185 232 268 45 38 chr1 241883920 241884077 -780276 - L1MC/D LINE L1 -2128 4018 3861 804 289 74 14 chr1 241884083 241884447 -779906 + L1MCb LINE L1 122 507 -5538 1219 223 38 0 chr1 241884473 241884765 -779588 - L1MC3 LINE L1 -1889 5896 5594 979 248 59 49 chr1 241885166 241885675 -778678 + L1MCb LINE L1 874 1387 -5167 487 281 56 48 chr1 241885768 241886266 -778087 + L1MCb LINE L1 1595 2059 -4505 1750 184 7 3 chr1 241886283 241886577 -777776 + MLT2B2 LTR ERVL 1 295 -220 320 158 0 0 chr1 241886580 241886637 -777716 + MLT2B2 LTR ERVL 459 515 0 307 249 85 60 chr1 241886690 241886891 -777462 + L1MCb LINE L1 2329 2534 -4030 917 195 36 18 chr1 241886937 241887158 -777195 - LTR55 LTR ERV -323 225 1 375 281 133 49 chr1 241887188 241887761 -776592 + L1MC4a LINE L1 5681 6301 -1507 10129 30 0 0 chr1 241888643 241889864 -774489 - L1PA5 LINE L1 -1910 4236 3016 9770 23 0 1 chr1 241889864 241891781 -772572 + L1PA5 LINE L1 4237 6152 -2 499 345 58 28 chr1 241891858 241892261 -772092 - L2 LINE L2 -130 3183 2772 438 294 35 42 chr1 241892318 241892631 -771722 - L1ME LINE L1 -587 5575 5265 1047 293 101 11 chr1 241892650 241893104 -771249 + L2 LINE L2 2283 2777 -537 243 253 99 11 chr1 241893229 241893320 -771033 + L1ME3A LINE L1 5846 5944 -226 31 96 0 0 chr1 241893484 241893578 -770775 + AT_rich Low_complexity Low_complexity 1 94 0 2586 157 2 2 chr1 241893871 241894299 -770054 - MSTA LTR MaLR 0 428 1 1383 174 20 10 chr1 241894816 241895115 -769238 - L1MA7 LINE L1 -3 6288 5987 4496 130 55 25 chr1 241895406 241896182 -768171 + MER4D LTR ERV1 1 800 -103 326 155 10 4 chr1 241896179 241896285 -768068 + MER4D LTR ERV1 622 769 -103 * 345 123 21 0 chr1 241896281 241896383 -767970 + MER4D LTR ERV1 714 796 -107 373 91 18 0 chr1 241896383 241896438 -767915 + MER4D LTR ERV1 745 800 -103 302 106 21 0 chr1 241896438 241896485 -767868 + MER4D LTR ERV1 749 796 -107 354 109 18 0 chr1 241896485 241896540 -767813 + MER4D LTR ERV1 714 769 -103 345 127 18 0 chr1 241896537 241896592 -767761 + MER4A LTR ERV1 509 564 -100 * 335 100 20 0 chr1 241896587 241896637 -767716 + MER4D LTR ERV1 745 795 -108 * 365 107 18 0 chr1 241896637 241896693 -767660 + MER4D LTR ERV1 744 800 -103 * 1049 115 19 0 chr1 241896689 241896845 -767508 + MER4D LTR ERV1 745 903 0 362 252 76 34 chr1 241898139 241898258 -766095 + LTR33 LTR ERVL 153 276 -245 295 217 52 61 chr1 241898317 241898432 -765921 + LTR33 LTR ERVL 397 510 -11 30 27 0 0 chr1 241899319 241899356 -764997 + AT_rich Low_complexity Low_complexity 1 37 0 2531 40 10 0 chr1 241900050 241900351 -764002 - AluY SINE Alu -7 304 1 22 94 0 0 chr1 241900384 241900448 -763905 + AT_rich Low_complexity Low_complexity 1 64 0 2391 96 0 0 chr1 241901510 241901812 -762541 - AluSc SINE Alu -7 302 1 330 294 81 35 chr1 241901929 241902126 -762227 + L1ME3A LINE L1 5746 5951 -219 206 225 0 14 chr1 241902160 241902231 -762122 + (CATA)n Simple_repeat Simple_repeat 4 73 0 2432 81 3 0 chr1 241902547 241902856 -761497 + AluSq SINE Alu 1 310 -3 234 243 71 0 chr1 241904210 241904280 -760073 + MIR SINE MIR 132 206 -56 315 0 0 0 chr1 241907781 241907816 -756537 + (TG)n Simple_repeat Simple_repeat 2 36 0 286 233 60 83 chr1 241908184 241908317 -756036 - MIR SINE MIR 0 262 133 1138 186 5 19 chr1 241908903 241909113 -755240 + AluJo SINE Alu 1 207 -105 1546 229 64 99 chr1 241909151 241909897 -754456 + MER21B LTR ERV1 16 735 -128 669 293 166 12 chr1 241910065 241910547 -753806 + L2 LINE L2 2553 3102 -211 30209 102 9 16 chr1 241910568 241915736 -748617 + L1P3 LINE L1 780 5992 -477 248 281 48 81 chr1 241915745 241915955 -748398 + L2 LINE L2 3111 3313 0 14917 181 32 6 chr1 241916259 241918629 -745724 + L1MA3 LINE L1 13 2472 -5093 2031 117 88 9 chr1 241918629 241918972 -745381 - THE1C LTR MaLR -4 371 2 14917 181 32 6 chr1 241918972 241919483 -744870 + L1MA3 LINE L1 2472 2968 -4597 5813 151 24 6 chr1 241919485 241921367 -742986 + L1MA3 LINE L1 5806 7723 -1 279 214 0 0 chr1 241922090 241922160 -742193 + (CA)n Simple_repeat Simple_repeat 2 71 0 2686 180 20 4 chr1 241923342 241923853 -740500 - Tigger1 DNA MER2_type -1898 520 2 3093 164 21 32 chr1 241923853 241924507 -739846 + L1MA7 LINE L1 5642 6288 -3 22 56 0 0 chr1 241924548 241924584 -739769 + AT_rich Low_complexity Low_complexity 1 36 0 425 332 16 16 chr1 241927489 241927679 -736674 - L1ME1 LINE L1 -18 6148 5959 285 29 0 0 chr1 241928185 241928219 -736134 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 241 0 0 chr1 241929019 241929073 -735280 + MER94 DNA DNA 42 95 -39 848 199 25 2 chr1 241929222 241929468 -734885 + AluJb SINE Alu 1 297 -15 444 273 105 13 chr1 241929625 241929863 -734490 - L1M4 LINE L1 -761 5385 5126 1955 91 14 7 chr1 241929866 241930142 -734211 - AluSx SINE Alu -12 300 23 1820 237 172 40 chr1 241930219 241931114 -733239 + L1M3e LINE L1 8 1020 -6010 1716 131 0 34 chr1 241931134 241931432 -732921 + Tigger3(Golem) DNA MER2_type 1181 1468 -1561 1323 277 114 23 chr1 241931446 241932084 -732269 - L1MDa LINE L1 -5661 879 18 230 116 0 0 chr1 241932089 241932132 -732221 - L1MC3 LINE L1 -9 7776 7734 23 0 0 0 chr1 241933572 241933595 -730758 + AT_rich Low_complexity Low_complexity 1 23 0 392 149 4 35 chr1 241933604 241933727 -730626 - L1MA7 LINE L1 -13 6278 6164 13133 173 16 19 chr1 241933777 241935835 -728518 - L1MA1 LINE L1 -293 6009 3961 2838 68 3 10 chr1 241935835 241936219 -728134 - L1PA8 LINE L1 -6 6166 5786 13133 173 16 19 chr1 241936219 241937769 -726584 - L1MA1 LINE L1 -2341 3961 2409 2087 160 43 53 chr1 241937763 241938197 -726156 + L1MA10 LINE L1 5833 6263 -71 * 2482 60 3 19 chr1 241938197 241938512 -725841 - AluY SINE Alu -1 310 1 2087 160 43 53 chr1 241938512 241938584 -725769 + L1MA10 LINE L1 6263 6334 0 444 171 0 0 chr1 241938713 241938789 -725564 + U6 snRNA snRNA 1 76 -31 32 26 0 0 chr1 241940974 241941013 -723340 + AT_rich Low_complexity Low_complexity 1 39 0 2021 141 3 16 chr1 241941183 241941496 -722857 + AluSx SINE Alu 1 309 -3 5669 102 21 10 chr1 241941651 241942568 -721785 + L1PB3 LINE L1 5222 6147 -7 210 196 20 0 chr1 241942574 241942625 -721728 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 304 260 26 0 chr1 241943001 241943078 -721275 + L2 LINE L2 3194 3272 0 3874 52 21 0 chr1 241943125 241943610 -720743 - L1PA6 LINE L1 -6 6148 5654 277 130 0 0 chr1 241943707 241943761 -720592 - L1MA8 LINE L1 -1 6290 6237 396 0 0 0 chr1 241944721 241944765 -719588 + (TG)n Simple_repeat Simple_repeat 2 45 0 1879 99 3 7 chr1 241944770 241945052 -719301 - L1PA13 LINE L1 -19 6144 5864 1325 269 42 44 chr1 241945528 241946119 -718234 - MER76 LTR ERV -10 678 89 542 228 48 7 chr1 241946118 241946263 -718090 + MER76 LTR ERV 357 507 -181 * 195 283 75 42 chr1 241947924 241948044 -716309 + L2 LINE L2 1763 1886 -1428 256 291 100 36 chr1 241948105 241948215 -716138 + L2 LINE L2 2255 2371 -943 2145 96 10 7 chr1 241948531 241948823 -715530 + AluY SINE Alu 1 293 -18 27 73 0 0 chr1 241948836 241948891 -715462 + AT_rich Low_complexity Low_complexity 1 55 0 676 204 19 78 chr1 241948939 241949145 -715208 - L1PA16 LINE L1 -9 6157 5964 198 0 0 0 chr1 241949147 241949169 -715184 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 4318 177 18 42 chr1 241949169 241950630 -713723 - L1PA3 LINE L1 -7 6148 4725 13556 113 50 8 chr1 241950630 241952808 -711545 + L1PA8 LINE L1 3276 5520 -652 2321 105 0 0 chr1 241952808 241953113 -711240 + AluY SINE Alu 1 305 -6 13556 113 50 8 chr1 241953113 241953795 -710558 + L1PA8 LINE L1 5520 6172 0 1319 104 0 31 chr1 241954981 241955004 -709349 - AluSc SINE Alu 0 309 287 181 0 0 0 chr1 241955004 241955024 -709329 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1319 104 0 31 chr1 241955024 241955192 -709161 - AluSc SINE Alu -22 287 119 26 30 0 0 chr1 241956576 241956609 -707744 + AT_rich Low_complexity Low_complexity 1 33 0 183 208 21 42 chr1 241956757 241956805 -707548 + L3b LINE CR1 1250 1296 -287 5959 34 1 3 chr1 241957913 241958630 -705723 + L1PA4 LINE L1 5439 6154 -1 1568 162 11 15 chr1 241958870 241959135 -705218 + AluJo SINE Alu 27 290 -22 30 45 0 0 chr1 241959406 241959450 -704903 + AT_rich Low_complexity Low_complexity 1 44 0 4878 118 42 4 chr1 241959680 241960895 -703458 - L1PA16 LINE L1 -9 6157 4879 1225 195 81 108 chr1 241960895 241961341 -703012 + MER34B LTR ERV1 9 442 -123 483 206 43 14 chr1 241961368 241961509 -702844 + MER34C LTR ERV1 440 584 -1 7658 216 22 12 chr1 241961737 241962910 -701443 - L1PA3 LINE L1 -2155 3991 2831 3811 196 33 54 chr1 241962910 241963899 -700454 - LTR5 LTR ERVK 0 969 1 7658 216 22 12 chr1 241963899 241964337 -700016 - L1PA3 LINE L1 -3315 2831 2399 1503 119 9 14 chr1 241964337 241964556 -699797 - AluSg/x SINE Alu 0 310 93 7658 216 22 12 chr1 241964556 241965059 -699294 - L1PA3 LINE L1 -3747 2399 1848 1043 126 16 16 chr1 241965061 241965243 -699110 - MLT2D LTR ERVL -225 189 8 11844 177 78 38 chr1 241965323 241967976 -696377 - ERVL-D LTR ERVL -186 5578 2821 912 164 9 121 chr1 241967979 241968211 -696142 + MLT1C LTR MaLR 262 467 0 935 259 75 11 chr1 241968244 241968684 -695669 + L1ME1 LINE L1 5695 6162 -4 21 0 0 0 chr1 241969000 241969021 -695332 + AT_rich Low_complexity Low_complexity 1 21 0 1561 145 18 22 chr1 241969301 241969352 -695001 + Tigger4(Zombi) DNA MER2_type 1 51 -2680 1735 181 0 0 chr1 241969352 241969633 -694720 - AluJb SINE Alu -17 295 15 1561 145 18 22 chr1 241969633 241969938 -694415 + Tigger4(Zombi) DNA MER2_type 51 2728 -3 2034 194 11 57 chr1 241970581 241971246 -693107 - MER4D LTR ERV1 -10 893 1 2461 109 8 0 chr1 241971885 241972279 -692074 + L1P LINE L1 4317 4713 -1433 * 28662 118 9 57 chr1 241972273 241978757 -685596 + L1PA8 LINE L1 19 6178 0 21 82 0 0 chr1 241979111 241979160 -685193 + AT_rich Low_complexity Low_complexity 1 49 0 2015 144 3 3 chr1 241979368 241979673 -684680 + AluSx SINE Alu 1 305 -7 2349 85 0 3 chr1 241980538 241980833 -683520 - AluSc SINE Alu -15 294 1 1675 160 12 3 chr1 241980833 241981158 -683195 - L1P LINE L1 -943 5203 4876 1008 172 23 27 chr1 241981158 241981378 -682975 + L1MA9 LINE L1 6088 6307 -5 716 172 8 8 chr1 241981507 241981635 -682718 - FLAM_A SINE Alu -5 137 10 2202 110 0 3 chr1 241981679 241981971 -682382 + AluSg SINE Alu 1 291 -19 2059 118 3 40 chr1 241982763 241983084 -681269 + AluSc SINE Alu 1 309 0 650 187 36 0 chr1 241983387 241983526 -680827 + LTR39 LTR ERV1 5 148 -635 * 2608 166 9 26 chr1 241983525 241984060 -680293 + LTR39 LTR ERV1 258 783 0 1578 148 0 7 chr1 241984355 241984645 -679708 + L1MA4 LINE L1 6000 6287 -13 1864 179 0 3 chr1 241984657 241984969 -679384 + AluSx SINE Alu 1 311 -1 946 173 34 42 chr1 241985078 241985315 -679038 + L1MA9 LINE L1 6078 6312 0 2064 186 5 8 chr1 241985903 241986290 -678063 + MLT1B LTR MaLR 5 390 0 204 296 25 12 chr1 241986865 241986946 -677407 - MIR SINE MIR -104 158 77 21 0 0 0 chr1 241987011 241987032 -677321 + AT_rich Low_complexity Low_complexity 1 21 0 404 294 132 23 chr1 241987046 241987311 -677042 + L1M4 LINE L1 2851 3144 -3002 598 176 293 16 chr1 241987318 241987506 -676847 + L1ME1 LINE L1 5921 6160 -6 510 347 46 21 chr1 241988857 241989142 -675211 - L2 LINE L2 -355 2959 2668 216 0 0 0 chr1 241989395 241989419 -674934 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 386 301 93 67 chr1 241991096 241991514 -672839 + L1M4 LINE L1 2736 3164 -2982 21 36 0 0 chr1 241991852 241991880 -672473 + AT_rich Low_complexity Low_complexity 1 28 0 437 278 41 25 chr1 241991896 241992141 -672212 + L1M4 LINE L1 3713 3961 -2185 1000 184 0 0 chr1 241992146 241992304 -672049 + FAM SINE Alu 1 158 -17 334 305 72 79 chr1 241992471 241992857 -671496 + L1M4 LINE L1 4133 4515 -1631 2242 99 0 0 chr1 241992857 241993141 -671212 + AluSg SINE Alu 1 284 -26 334 305 72 79 chr1 241993141 241993334 -671019 + L1M4 LINE L1 4515 4708 -1438 2437 130 60 16 chr1 241993685 241994122 -670231 + MER39B LTR ERV1 1 456 -197 727 171 20 75 chr1 241994526 241994725 -669628 - MER53 DNA DNA 0 189 2 186 103 0 0 chr1 241995169 241995198 -669155 + (CA)n Simple_repeat Simple_repeat 1 29 0 205 359 0 0 chr1 241996021 241996085 -668268 - MIR3 SINE MIR -46 162 99 339 277 212 0 chr1 241996263 241996400 -667953 - MER5A DNA MER1_type -3 186 21 521 221 19 10 chr1 241996437 241996541 -667812 + MER5A DNA MER1_type 20 124 -65 22 0 0 0 chr1 241996951 241996973 -667380 + AT_rich Low_complexity Low_complexity 1 22 0 1657 166 9 44 chr1 241997009 241997328 -667025 - AluJo SINE Alu -4 308 1 2409 68 3 10 chr1 241997475 241997786 -666567 + AluY SINE Alu 1 309 -2 1009 161 11 23 chr1 241997799 241997973 -666380 + FAM SINE Alu 1 172 -3 1124 152 15 61 chr1 241998010 241998274 -666079 - L1MA10 LINE L1 -11 6323 6072 1045 139 10 56 chr1 241998280 241998578 -665775 + L1M2 LINE L1 5191 5478 -743 1492 151 28 71 chr1 241999253 241999577 -664776 - AluJb SINE Alu 0 312 3 983 141 0 27 chr1 242000187 242000336 -664017 + FRAM SINE Alu 10 154 -22 1387 95 67 36 chr1 242000583 242000836 -663517 - Tigger7 DNA MER2_type 0 2491 2231 942 218 0 0 chr1 242001832 242002006 -662347 - FAM SINE Alu -1 174 1 2298 125 0 0 chr1 242002097 242002408 -661945 - AluSx SINE Alu -1 311 1 660 276 88 61 chr1 242003511 242003805 -660548 - L2 LINE L2 -20 3293 2983 1528 126 158 4 chr1 242003805 242004051 -660302 + AluSg1 SINE Alu 1 284 -25 660 276 88 61 chr1 242004051 242004314 -660039 - L2 LINE L2 -330 2983 2729 308 220 10 70 chr1 242004366 242004466 -659887 - L2 LINE L2 -757 2557 2464 24 0 0 0 chr1 242004600 242004624 -659729 + AT_rich Low_complexity Low_complexity 1 24 0 1964 227 15 17 chr1 242004628 242005100 -659253 + LTR31 LTR ERV1 115 585 -34 750 260 25 50 chr1 242005120 242005266 -659087 - L2 LINE L2 -855 2459 2322 1189 198 38 109 chr1 242005266 242005686 -658667 - MLT1B LTR MaLR 0 390 1 750 260 25 50 chr1 242005686 242005816 -658537 - L2 LINE L2 -992 2322 2190 3703 186 36 42 chr1 242005844 242007174 -657179 + L1MB5 LINE L1 4847 6161 -13 21 57 0 0 chr1 242007174 242007209 -657144 + AT_rich Low_complexity Low_complexity 1 35 0 183 398 36 0 chr1 242008350 242008433 -655920 + MIR SINE MIR 32 117 -91 1743 178 0 10 chr1 242008803 242009106 -655247 - AluJo SINE Alu -12 300 1 856 296 63 28 chr1 242009814 242010209 -654144 - L2 LINE L2 -10 3303 2895 534 282 72 23 chr1 242010183 242010253 -654100 - L2 LINE L2 -561 2753 2688 * 3543 147 44 14 chr1 242010253 242010886 -653467 - MER39B LTR ERV1 -1 652 1 534 282 72 23 chr1 242010886 242011077 -653276 - L2 LINE L2 -626 2688 2479 601 270 0 8 chr1 242011374 242011500 -652853 + FLAM_A SINE Alu 1 125 -8 248 263 0 0 chr1 242012861 242012918 -651435 + MER2 DNA MER2_type 1 57 -288 1097 156 76 22 chr1 242012932 242013397 -650956 - MER109 Unknown Unknown -11 2421 1897 * 2215 127 83 12 chr1 242013390 242013822 -650531 - MER109 Unknown Unknown -1040 1392 930 1775 172 25 64 chr1 242014023 242014505 -649848 - MLT2D LTR ERVL 0 464 1 1014 327 58 13 chr1 242014733 242015631 -648722 - ERVL LTR ERVL -1117 4647 3652 557 143 41 0 chr1 242015643 242015741 -648612 - L1MA6 LINE L1 -374 5926 5825 1103 104 6 0 chr1 242015741 242015892 -648461 + L1MA6 LINE L1 6135 6299 -1 2361 127 18 5 chr1 242016132 242016525 -647828 + L1MA5A LINE L1 5894 6291 -6 22 35 0 0 chr1 242017840 242017869 -646484 + AT_rich Low_complexity Low_complexity 1 29 0 4143 196 48 11 chr1 242018170 242018997 -645356 + MER21B LTR ERV1 5 862 -1 344 288 127 28 chr1 242019025 242019237 -645116 - L1MC/D LINE L1 -2222 5586 5354 383 314 189 27 chr1 242019486 242019948 -644405 - L2 LINE L2 -5 3308 2778 288 0 0 0 chr1 242020106 242020138 -644215 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr1 242020285 242020313 -644040 + AT_rich Low_complexity Low_complexity 1 28 0 301 350 67 11 chr1 242020646 242020826 -643527 + MIR SINE MIR 73 262 0 9898 40 10 133 chr1 242021202 242022767 -641586 - SVA Other Other 0 1386 14 2658 169 44 14 chr1 242023029 242023937 -640416 - L1M2 LINE L1 -615 5676 4732 897 182 43 0 chr1 242023938 242024125 -640228 - L1MA5A LINE L1 -7 6290 6096 929 238 35 8 chr1 242024139 242024400 -639953 + Charlie1 DNA MER1_type 1913 2180 -581 3239 22 0 2 chr1 242024405 242024810 -639543 - L1PA2 LINE L1 -875 5271 4868 7679 15 0 1 chr1 242024810 242025747 -638606 + L1PA2 LINE L1 5262 6200 0 2339 243 22 25 chr1 242029614 242029634 -634719 - L1M2 LINE L1 -4779 2430 2411 435 172 0 0 chr1 242029634 242029727 -634626 - L1MA4A LINE L1 -7 6296 6204 2339 243 22 25 chr1 242029727 242030602 -633751 - L1M2 LINE L1 -4798 2411 1275 675 238 27 82 chr1 242030623 242030882 -633471 - L1M2 LINE L1 -6597 612 1 383 243 114 37 chr1 242030964 242031369 -632984 + L1MC5 LINE L1 7117 7495 -547 334 275 143 63 chr1 242031738 242032087 -632266 + L1M4 LINE L1 4640 5016 -1130 1446 189 82 2 chr1 242032093 242032609 -631744 - L1M2 LINE L1 -744 5402 4920 459 68 0 0 chr1 242032609 242032668 -631685 - MER39 LTR ERV1 -648 59 1 622 251 152 42 chr1 242032847 242033374 -630979 + MER34C LTR ERV1 1 585 0 2070 241 63 2 chr1 242033515 242034136 -630217 - LTR65 LTR ERV1 -6 663 5 23 0 0 0 chr1 242034795 242034818 -629535 + AT_rich Low_complexity Low_complexity 1 23 0 2105 125 0 0 chr1 242034969 242035258 -629095 - AluSx SINE Alu -20 292 4 21 0 0 0 chr1 242035811 242035832 -628521 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 242035979 242036002 -628351 + AT_rich Low_complexity Low_complexity 1 23 0 270 368 47 0 chr1 242036107 242036213 -628140 + MIR SINE MIR 88 198 -64 1041 211 64 76 chr1 242036558 242037097 -627256 - MER34B LTR ERV1 0 565 1 236 323 0 0 chr1 242037251 242037313 -627040 + MER5A DNA MER1_type 128 189 0 202 367 48 7 chr1 242038130 242038277 -626076 + MIR SINE MIR 14 166 -96 2454 69 3 3 chr1 242040411 242040716 -623637 + AluSp SINE Alu 1 305 -8 1950 59 30 7 chr1 242040904 242041175 -623178 + MLT2A1 LTR ERVL 1 277 -167 5563 78 17 0 chr1 242041176 242041932 -622421 + HERVL-A1 LTR ERVL 765 1533 -4121 28588 72 11 3 chr1 242041933 242045769 -618584 + HERVL-A1 LTR ERVL 1788 5654 0 2868 95 34 27 chr1 242045769 242046210 -618143 + MLT2A1 LTR ERVL 1 444 0 3645 96 11 4 chr1 242046999 242047543 -616810 + L1PA13 LINE L1 5616 6163 0 1552 276 101 19 chr1 242047677 242048617 -615736 - L1MC4a LINE L1 -1538 6270 5254 296 323 36 5 chr1 242048835 242049030 -615323 - L1MC4a LINE L1 -1127 5019 4819 2542 211 35 8 chr1 242049365 242050023 -614330 - L1MD2 LINE L1 -3 6356 5681 247 174 0 29 chr1 242050026 242050095 -614258 + (TA)n Simple_repeat Simple_repeat 1 67 0 303 204 21 75 chr1 242050105 242050198 -614155 + L1MC4 LINE L1 6614 6701 -1341 382 220 0 17 chr1 242050201 242050319 -614034 + (TA)n Simple_repeat Simple_repeat 2 117 0 434 159 12 65 chr1 242050401 242050571 -613782 + (TA)n Simple_repeat Simple_repeat 1 161 0 1226 227 93 6 chr1 242050572 242050937 -613416 - L1MD2 LINE L1 -696 5663 5267 702 228 11 21 chr1 242050904 242051093 -613260 - L1MD2 LINE L1 -1886 4260 4074 * 195 283 75 42 chr1 242052774 242052894 -611459 + L2 LINE L2 1763 1886 -1428 256 291 100 36 chr1 242052955 242053065 -611288 + L2 LINE L2 2255 2371 -943 25 0 0 0 chr1 242053478 242053503 -610850 + AT_rich Low_complexity Low_complexity 1 25 0 2270 102 0 7 chr1 242053920 242054223 -610130 - AluSc SINE Alu -8 301 1 1711 160 0 11 chr1 242055667 242055936 -608417 + AluJb SINE Alu 1 266 -46 1663 184 22 49 chr1 242055938 242056346 -608007 + L1MA7 LINE L1 4782 5178 -968 * 2850 136 81 2 chr1 242056337 242056831 -607522 + L1MA7 LINE L1 5431 5963 -328 3263 265 57 23 chr1 242056840 242058139 -606214 - L1M3de LINE L1 -5289 1364 3 753 291 59 87 chr1 242058181 242058823 -605530 - L1MEc LINE L1 -4180 2216 1685 2264 105 3 6 chr1 242058823 242059136 -605217 + AluSx SINE Alu 1 312 0 753 291 59 87 chr1 242059136 242059701 -604652 - L1MEc LINE L1 -4711 1685 1106 25 0 0 0 chr1 242060262 242060287 -604066 + AT_rich Low_complexity Low_complexity 1 25 0 1722 143 3 36 chr1 242062546 242062847 -601506 + AluJo SINE Alu 6 296 -16 24 32 0 0 chr1 242062847 242062878 -601475 + AT_rich Low_complexity Low_complexity 1 31 0 2210 94 19 13 chr1 242063179 242063486 -600867 + AluSx SINE Alu 1 309 -3 1630 193 7 3 chr1 242063748 242064048 -600305 - AluJo SINE Alu -11 301 1 2478 80 0 3 chr1 242064349 242064663 -599690 + AluSp SINE Alu 1 313 0 448 352 53 27 chr1 242064936 242065237 -599116 + L2 LINE L2 1985 2293 -1021 303 368 118 18 chr1 242065803 242066075 -598278 + L2 LINE L2 2586 2884 -430 2482 67 0 0 chr1 242066210 242066510 -597843 - AluY SINE Alu -11 300 1 2286 92 16 0 chr1 242066639 242066945 -597408 - AluSp SINE Alu -2 311 1 2135 107 0 30 chr1 242067121 242067421 -596932 + AluSg SINE Alu 3 293 -17 377 85 0 17 chr1 242067493 242067552 -596801 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 834 143 74 29 chr1 242069380 242069555 -594798 + L1MA9 LINE L1 6130 6312 0 2354 88 0 0 chr1 242069604 242069900 -594453 + AluSg SINE Alu 1 296 -14 21361 28 3 0 chr1 242070154 242073297 -591056 - L1PA2 LINE L1 -151 6004 2858 206 248 8 23 chr1 242073545 242073674 -590679 + A-rich Low_complexity Low_complexity 5 131 0 202 356 107 7 chr1 242073885 242074034 -590319 + L2 LINE L2 1113 1276 -2038 4853 169 26 15 chr1 242074042 242074928 -589425 + MER4D LTR ERV1 1 896 -7 607 303 66 36 chr1 242074938 242075242 -589111 + L2 LINE L2 1285 1597 -1717 574 259 105 92 chr1 242075250 242075803 -588550 + MER34B LTR ERV1 6 565 0 933 303 173 38 chr1 242075809 242076781 -587572 + L2 LINE L2 1605 2707 -607 762 110 0 0 chr1 242077623 242077723 -586630 + AluS SINE Alu 1 100 -213 2411 74 0 0 chr1 242078120 242078429 -585924 - AluSx SINE Alu -3 309 1 690 197 51 0 chr1 242078456 242078593 -585760 - L1PB4 LINE L1 -15 6141 5998 23 33 0 0 chr1 242078816 242078846 -585507 + AT_rich Low_complexity Low_complexity 1 30 0 1422 141 0 0 chr1 242079998 242080204 -584149 - AluJo SINE Alu -106 206 1 370 262 16 56 chr1 242080272 242080398 -583955 + L2 LINE L2 3193 3313 0 2170 146 10 55 chr1 242081440 242081858 -582495 - LOR1b LTR ERV1 0 461 63 369 0 0 0 chr1 242081860 242081901 -582452 + (TC)n Simple_repeat Simple_repeat 2 42 0 315 0 0 0 chr1 242081900 242081935 -582418 + (TG)n Simple_repeat Simple_repeat 2 36 0 * 1485 83 16 0 chr1 242082099 242082292 -582061 - AluSg/x SINE Alu 0 310 115 1657 178 33 0 chr1 242083246 242083522 -580831 - AluSx SINE Alu -27 285 1 2331 87 0 0 chr1 242083926 242084224 -580129 + AluSg SINE Alu 3 300 -10 224 147 221 44 chr1 242084744 242084812 -579541 + L2 LINE L2 3234 3313 0 24 53 0 0 chr1 242084891 242084929 -579424 + AT_rich Low_complexity Low_complexity 1 38 0 1613 84 19 9 chr1 242085014 242085227 -579126 + AluSg SINE Alu 1 215 -95 336 294 0 37 chr1 242086318 242086427 -577926 + MER34 LTR ERV1 2 106 -436 1188 226 73 21 chr1 242086466 242086835 -577518 + LTR48B LTR ERV1 201 644 0 3481 219 36 40 chr1 242087030 242087367 -576986 + MER21B LTR ERV1 1 338 -525 2267 110 0 0 chr1 242087367 242087666 -576687 + AluSx SINE Alu 1 299 -13 3481 219 36 40 chr1 242087666 242088149 -576204 + MER21B LTR ERV1 338 818 -45 326 326 39 28 chr1 242088192 242088370 -575983 + MLT1I LTR MaLR 203 382 -27 2075 71 61 48 chr1 242088859 242089153 -575200 - AluSq SINE Alu -13 300 3 1163 168 0 15 chr1 242089746 242089942 -574411 + AluJo SINE Alu 86 278 -34 360 161 0 0 chr1 242089997 242090059 -574294 + AluS SINE Alu 2 63 -237 1997 127 0 38 chr1 242090084 242090399 -573954 + AluSx SINE Alu 1 303 -9 34 24 0 0 chr1 242090488 242090529 -573824 + AT_rich Low_complexity Low_complexity 1 41 0 820 178 0 0 chr1 242091289 242091418 -572935 - FLAM_A SINE Alu -4 129 1 308 294 107 48 chr1 242091681 242091868 -572485 + L1M2 LINE L1 447 644 -6205 1275 166 24 43 chr1 242092159 242092412 -571941 + AluJo SINE Alu 41 288 -24 339 133 0 53 chr1 242092922 242092997 -571356 - L1PB4 LINE L1 -3 6153 6083 2353 93 0 7 chr1 242093007 242093309 -571044 - AluSg SINE Alu -10 300 1 192 212 94 106 chr1 242093876 242093961 -570392 - MER5A DNA MER1_type -28 161 78 2444 95 0 13 chr1 242094408 242094725 -569628 - AluSp SINE Alu 0 313 1 917 172 31 84 chr1 242095048 242095275 -569078 - MER20 DNA MER1_type -4 215 1 268 313 0 0 chr1 242095275 242095355 -568998 + (TG)n Simple_repeat Simple_repeat 1 80 0 245 218 64 77 chr1 242095520 242095598 -568755 - L2 LINE L2 -1 3312 3236 1618 184 22 0 chr1 242096113 242096385 -567968 - AluJo SINE Alu -34 278 1 241 245 10 10 chr1 242096719 242096821 -567532 + (TA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr1 242097070 242097092 -567261 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 242097144 242097172 -567181 + AT_rich Low_complexity Low_complexity 1 28 0 1616 199 82 15 chr1 242098715 242098962 -565391 - L1MB3 LINE L1 -36 6147 5863 345 24 0 0 chr1 242098962 242099004 -565349 + (TG)n Simple_repeat Simple_repeat 1 42 0 1616 199 82 15 chr1 242099004 242099148 -565205 - L1MB3 LINE L1 -320 5863 5730 21 36 0 0 chr1 242101308 242101336 -563017 + AT_rich Low_complexity Low_complexity 1 28 0 776 303 51 36 chr1 242102190 242102602 -561751 - LTR16A LTR ERVL -15 435 18 1488 223 32 69 chr1 242102879 242103345 -561008 + LTR38 LTR ERV1 97 545 -11 439 263 65 57 chr1 242103416 242103678 -560675 + L1MDa LINE L1 1269 1532 -5008 240 119 0 0 chr1 242103978 242104020 -560333 - L1P4 LINE L1 -342 5823 5782 355 24 0 0 chr1 242104022 242104064 -560289 - MADE1 DNA Mariner -2 78 37 4123 185 13 20 chr1 242104064 242105263 -559090 - L1P4 LINE L1 -523 5642 4453 2339 77 7 13 chr1 242105745 242106055 -558298 + AluY SINE Alu 1 308 -3 2243 170 109 22 chr1 242106072 242107409 -556944 - SATR1 Satellite Satellite -18 1452 1 258 279 44 0 chr1 242107802 242107870 -556483 + SATR1 Satellite Satellite 51 121 -349 1201 184 54 76 chr1 242107897 242108412 -555941 + SATR1 Satellite Satellite 1 503 -20 7515 30 0 0 chr1 242108412 242109346 -555007 + L1P LINE L1 3907 4840 -1306 1006 188 9 36 chr1 242109517 242109740 -554613 - LTR51 LTR ERV1 -454 217 1 2336 162 108 25 chr1 242109740 242110288 -554065 + LTR49 LTR ERV1 3 595 0 328 316 124 14 chr1 242110508 242110717 -553636 + MIR SINE MIR 1 232 -30 2169 105 10 19 chr1 242110793 242111106 -553247 + AluSp SINE Alu 1 310 -3 1017 75 22 34 chr1 242111113 242111435 -552918 + (GAAA)n Simple_repeat Simple_repeat 4 319 0 730 291 110 53 chr1 242111570 242111807 -552546 + MER45R DNA AcHobo 1 223 -1358 264 100 0 0 chr1 242111807 242111847 -552506 + (CA)n Simple_repeat Simple_repeat 1 40 0 730 291 110 53 chr1 242111847 242112271 -552082 + MER45R DNA AcHobo 223 700 -881 1729 170 45 3 chr1 242112345 242112727 -551626 + L1 LINE L1 4461 4858 -1288 1608 194 14 52 chr1 242112747 242113169 -551184 - L1MA4 LINE L1 -10 6290 5885 703 218 11 11 chr1 242113169 242113343 -551010 + L1 LINE L1 4844 5017 -1129 1295 133 47 16 chr1 242115002 242115257 -549096 - Tigger7 DNA MER2_type 0 2491 2229 1642 169 11 7 chr1 242115576 242115855 -548498 - AluJo SINE Alu -12 300 21 520 336 58 33 chr1 242116535 242116934 -547419 + HAL1 LINE L1 932 1340 -1167 1343 239 91 21 chr1 242117352 242117871 -546482 + L1MB3 LINE L1 4016 4570 -1576 5679 173 14 3 chr1 242117873 242119002 -545351 + L1P LINE L1 2213 3353 -2793 3438 109 6 0 chr1 242119002 242119494 -544859 + L1PA10 LINE L1 5657 6152 -16 29 0 0 0 chr1 242119500 242119529 -544824 + AT_rich Low_complexity Low_complexity 1 29 0 1346 249 18 20 chr1 242119548 242120005 -544348 + L1MB3 LINE L1 4579 5034 -1112 349 206 14 0 chr1 242120054 242120127 -544226 - Tigger5 DNA MER2_type 0 2323 2250 301 237 0 0 chr1 242120187 242120246 -544107 - Tigger5 DNA MER2_type 0 2323 2265 1867 202 76 54 chr1 242120278 242120372 -543981 + L1MB3 LINE L1 5578 5668 -515 1290 138 26 0 chr1 242120372 242120603 -543750 - L1PA16 LINE L1 -7 6159 5923 1867 202 76 54 chr1 242120603 242121098 -543255 + L1MB3 LINE L1 5668 6180 -3 21 0 0 0 chr1 242121301 242121322 -543031 + AT_rich Low_complexity Low_complexity 1 21 0 426 287 61 11 chr1 242121408 242121589 -542764 - LTR26 LTR ERV1 -325 278 89 233 175 0 0 chr1 242121667 242121707 -542646 + Alu SINE Alu 59 98 -204 231 88 0 0 chr1 242122149 242122183 -542170 + (TC)n Simple_repeat Simple_repeat 1 34 0 2767 157 32 3 chr1 242122512 242123051 -541302 + L1P4 LINE L1 5104 5666 -500 327 104 0 0 chr1 242123051 242123099 -541254 + (CA)n Simple_repeat Simple_repeat 1 48 0 2767 157 32 3 chr1 242123099 242123212 -541141 + L1P4 LINE L1 5666 5774 -392 203 136 45 0 chr1 242123648 242123692 -540661 + (TATG)n Simple_repeat Simple_repeat 2 47 0 213 132 0 0 chr1 242125123 242125161 -539192 + (TG)n Simple_repeat Simple_repeat 1 38 0 304 273 163 50 chr1 242126902 242127184 -537169 - L1M2 LINE L1 -6148 701 388 2429 61 0 3 chr1 242128320 242128631 -535722 - AluY SINE Alu -1 310 1 219 69 0 0 chr1 242128670 242128699 -535654 + (A)n Simple_repeat Simple_repeat 1 29 0 213 226 0 0 chr1 242128888 242128941 -535412 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 603 269 22 96 chr1 242130651 242130974 -533379 + L2 LINE L2 3014 3312 -1 22 0 0 0 chr1 242131458 242131480 -532873 + AT_rich Low_complexity Low_complexity 1 22 0 2007 139 10 0 chr1 242131829 242132131 -532222 - AluSx SINE Alu -7 305 1 314 215 42 132 chr1 242134494 242134579 -529774 + MIR SINE MIR 132 200 -62 288 0 0 0 chr1 242134579 242134611 -529742 + (CA)n Simple_repeat Simple_repeat 2 33 0 314 215 42 132 chr1 242134611 242134669 -529684 + MIR SINE MIR 200 262 0 1520 50 0 0 chr1 242135217 242135398 -528955 - AluY SINE Alu -130 181 1 4883 178 42 6 chr1 242135607 242136691 -527662 + L1MA5 LINE L1 5051 6179 -121 198 0 0 0 chr1 242136691 242136713 -527640 + (CA)n Simple_repeat Simple_repeat 2 23 0 4883 178 42 6 chr1 242136713 242136832 -527521 + L1MA5 LINE L1 6179 6292 -8 24 53 0 0 chr1 242138037 242138075 -526278 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr1 242138592 242138622 -525731 + AT_rich Low_complexity Low_complexity 1 30 0 417 309 94 11 chr1 242139231 242139422 -524931 - L2 LINE L2 -2783 531 325 1052 276 97 12 chr1 242141189 242141938 -522415 + L1ME2 LINE L1 5329 6164 0 2526 55 0 3 chr1 242143229 242143540 -520813 - AluY SINE Alu -1 310 1 181 265 118 0 chr1 242143648 242143716 -520637 + L2 LINE L2 2254 2329 -985 2156 103 3 26 chr1 242144468 242144780 -519573 - AluSq SINE Alu -8 305 1 2297 91 0 10 chr1 242145438 242145734 -518619 + AluSx SINE Alu 1 293 -19 1823 163 124 0 chr1 242145786 242146166 -518187 - MSTA LTR MaLR 0 428 2 1654 194 3 7 chr1 242146282 242146586 -517767 - AluJo SINE Alu -5 307 5 1329 287 59 77 chr1 242147228 242148310 -516043 - L2 LINE L2 0 3313 2258 398 324 113 14 chr1 242148312 242148525 -515828 - L2 LINE L2 -2977 337 104 2268 78 0 11 chr1 242149133 242149462 -514891 - AluY SINE Alu 0 328 3 2027 101 24 37 chr1 242149755 242150052 -514301 - AluSg SINE Alu -17 293 1 186 118 0 0 chr1 242150352 242150386 -513967 + (GA)n Simple_repeat Simple_repeat 2 35 0 201 39 0 0 chr1 242151783 242151809 -512544 + (GA)n Simple_repeat Simple_repeat 1 26 0 883 197 7 0 chr1 242151809 242151961 -512392 - FAM SINE Alu -32 153 1 22 70 0 0 chr1 242152033 242152076 -512277 + AT_rich Low_complexity Low_complexity 1 43 0 299 157 0 0 chr1 242152100 242152151 -512202 + MLT1E2 LTR MaLR 1 51 -603 1317 271 40 51 chr1 242152189 242152683 -511670 + MLT1E2 LTR MaLR 137 625 -1 2158 173 36 19 chr1 242152830 242153247 -511106 + MSTB LTR MaLR 1 424 -2 252 143 0 0 chr1 242153290 242153332 -511021 + (CTA)n Simple_repeat Simple_repeat 1 42 0 1846 135 21 10 chr1 242153367 242153656 -510697 - AluJb SINE Alu -20 292 1 233 321 82 1 chr1 242153724 242153848 -510505 - MIR SINE MIR -36 172 41 29306 42 34 2 chr1 242153958 242157821 -506532 - L1P LINE L1 -2150 3996 10 375 182 91 0 chr1 242158095 242158183 -506170 - L1PB4 LINE L1 -6 6150 6055 180 0 0 0 chr1 242158516 242158536 -505817 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 574 299 66 25 chr1 242158787 242159028 -505325 + MIR SINE MIR 12 262 0 1241 186 31 55 chr1 242159788 242160079 -504274 - AluJo SINE Alu -28 284 1 248 363 0 0 chr1 242160951 242161053 -503300 - MER5A DNA MER1_type -83 106 5 1761 191 88 30 chr1 242161424 242161858 -502495 - LTR2B LTR ERV1 0 490 32 10473 71 2 0 chr1 242161877 242163212 -501141 - Harlequin LTR ERV1 -1 6895 5558 6113 107 8 26 chr1 242163312 242164258 -500095 + MER11C LTR ERVK 143 1071 0 895 216 20 62 chr1 242164331 242164461 -499892 + LTR26E LTR ERV1 321 455 -148 2398 72 0 3 chr1 242164461 242164754 -499599 + AluY SINE Alu 18 309 -2 895 216 20 62 chr1 242164754 242164916 -499437 + LTR26E LTR ERV1 455 603 0 297 219 16 0 chr1 242164916 242164976 -499377 - AluSp SINE Alu -107 196 136 245 250 0 0 chr1 242165642 242165698 -498655 + L1MA6 LINE L1 6194 6249 -51 757 81 0 0 chr1 242165702 242165801 -498552 + HY3 scRNA scRNA 1 99 -2 29 47 0 0 chr1 242166019 242166062 -498291 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr1 242166822 242166852 -497501 + AT_rich Low_complexity Low_complexity 1 30 0 189 94 0 0 chr1 242167177 242167209 -497144 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 926 231 37 26 chr1 242167911 242168179 -496174 - LTR36 LTR ERV1 0 611 341 24 32 0 0 chr1 242168613 242168644 -495709 + AT_rich Low_complexity Low_complexity 1 31 0 2501 224 30 0 chr1 242168685 242169257 -495096 - L1MB3 LINE L1 -17 6166 5578 231 226 0 38 chr1 242169297 242169350 -495003 + Tigger5 DNA MER2_type 2273 2323 0 354 203 76 0 chr1 242169404 242169483 -494870 + Tigger5 DNA MER2_type 2238 2322 -1 1031 228 3 44 chr1 242169533 242169758 -494595 - L1MB3 LINE L1 -1112 5034 4822 1564 202 0 25 chr1 242169758 242170075 -494278 - AluJb SINE Alu 0 312 4 1031 228 3 44 chr1 242170075 242170147 -494206 - L1MB3 LINE L1 -1324 4822 4749 2101 204 163 0 chr1 242170155 242170708 -493645 + L1MB3 LINE L1 4074 4716 -1430 1079 265 30 34 chr1 242170711 242171118 -493235 - L1MB3 LINE L1 -1401 4745 4341 285 270 27 0 chr1 242171118 242171192 -493161 - MLT1H LTR MaLR -334 215 140 494 256 11 17 chr1 242171192 242171368 -492985 - L1MB3 LINE L1 -1801 4345 4171 2244 75 0 0 chr1 242171481 242171774 -492579 + L1PA6 LINE L1 5861 6153 -1 274 267 0 13 chr1 242171849 242171924 -492429 + MIR SINE MIR 72 145 -117 23 33 0 0 chr1 242171935 242171965 -492388 + AT_rich Low_complexity Low_complexity 1 30 0 559 178 19 13 chr1 242172129 242172286 -492067 + GA-rich Low_complexity Low_complexity 3 160 0 2193 123 0 0 chr1 242172591 242172924 -491429 + AluSx SINE Alu 1 333 0 226 0 59 0 chr1 242173053 242173087 -491266 + (TG)n Simple_repeat Simple_repeat 2 37 0 303 314 74 45 chr1 242175111 242175353 -489000 + L1ME LINE L1 5363 5611 -2197 218 216 26 9 chr1 242175369 242175485 -488868 + (TA)n Simple_repeat Simple_repeat 1 118 0 433 272 35 0 chr1 242175521 242175694 -488659 + (TA)n Simple_repeat Simple_repeat 2 180 0 332 226 108 17 chr1 242175722 242175852 -488501 + L1ME LINE L1 5660 5804 -358 371 326 102 51 chr1 242175867 242176259 -488094 + L1ME3A LINE L1 5410 5821 -349 237 270 36 73 chr1 242176387 242176524 -487829 + L1ME3A LINE L1 5962 6093 -77 21 0 0 0 chr1 242176624 242176645 -487708 + AT_rich Low_complexity Low_complexity 1 21 0 2328 168 41 39 chr1 242176943 242177468 -486885 + MER41B LTR ERV1 96 466 -12 14361 34 7 2 chr1 242179487 242181992 -482361 - L1PA4 LINE L1 -17 6138 3625 22428 53 2 0 chr1 242182097 242184977 -479376 - L1PA4 LINE L1 -2526 3620 735 2011 192 16 23 chr1 242185264 242185697 -478656 + Tigger2a DNA MER2_type 5 434 0 7567 21 6 0 chr1 242185982 242187393 -476960 + L1PA3 LINE L1 4757 6172 0 222 218 0 0 chr1 242187396 242187451 -476902 + A-rich Low_complexity Low_complexity 1 55 0 759 71 0 0 chr1 242189263 242189362 -474991 + HY3 scRNA scRNA 1 99 -2 22 70 0 0 chr1 242189446 242189489 -474864 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr1 242189596 242189628 -474725 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr1 242190360 242190390 -473963 + AT_rich Low_complexity Low_complexity 1 30 0 244 216 0 0 chr1 242191265 242191316 -473037 + (ATG)n Simple_repeat Simple_repeat 3 53 0 363 270 153 63 chr1 242192056 242192356 -471997 + MER31-int LTR ERV1 5094 5420 -911 214 211 0 0 chr1 242192375 242192413 -471940 + T-rich Low_complexity Low_complexity 1 38 0 348 259 41 41 chr1 242192428 242192575 -471778 + MER31-int LTR ERV1 4147 4293 -643 223 333 11 23 chr1 242192607 242192694 -471659 + MIR SINE MIR 60 145 -63 2115 36 18 29 chr1 242193214 242193491 -470862 + L1PA4 LINE L1 5880 6153 -2 1538 211 25 3 chr1 242193517 242193873 -470480 + L1MB3 LINE L1 5803 6166 -17 246 32 0 0 chr1 242194338 242194369 -469984 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1075 204 46 84 chr1 242194375 242194839 -469514 + LTR36 LTR ERV1 72 590 -21 344 310 103 7 chr1 242195329 242195474 -468879 - MIR SINE MIR -22 240 82 295 205 0 25 chr1 242195481 242195603 -468750 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 27 87 0 0 chr1 242195709 242195778 -468575 + AT_rich Low_complexity Low_complexity 1 69 0 187 400 12 0 chr1 242196240 242196325 -468028 - MIR SINE MIR -63 145 60 2505 50 0 0 chr1 242196484 242196781 -467572 + AluY SINE Alu 1 297 -14 25 0 0 0 chr1 242197192 242197217 -467136 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 242197610 242197640 -466713 + AT_rich Low_complexity Low_complexity 1 30 0 365 235 0 0 chr1 242198566 242198664 -465689 - L1MA6 LINE L1 -7 6293 6196 912 163 0 0 chr1 242198792 242198939 -465414 + L1P3 LINE L1 10 156 -6305 3616 74 2 0 chr1 242198941 242199416 -464937 + L1PA6 LINE L1 5678 6153 -1 284 256 12 12 chr1 242200167 242200227 -464126 + FRAM/FAM SINE Alu 1 59 -107 400 252 19 9 chr1 242200227 242200334 -464019 - LTR26E LTR ERV1 0 603 496 689 87 148 0 chr1 242200339 242200454 -463899 - LTR12 LTR ERV1 -236 478 347 * 725 157 0 0 chr1 242200450 242200558 -463795 - LTR12 LTR ERV1 -601 113 6 819 308 45 27 chr1 242200558 242200962 -463391 - LTR26E LTR ERV1 -96 526 89 286 224 30 0 chr1 242201039 242201106 -463247 + FLAM SINE Alu 57 125 -8 396 298 49 96 chr1 242201368 242201734 -462619 + MER34 LTR ERV1 159 507 -35 10977 133 13 0 chr1 242201798 242203540 -460813 + L1P LINE L1 2501 4265 -1881 8751 111 4 21 chr1 242203540 242204895 -459458 - L1P LINE L1 -3362 2784 1453 304 246 0 0 chr1 242204894 242204963 -459390 - L1MA9 LINE L1 -157 6155 6087 * 308 235 12 12 chr1 242204976 242205061 -459292 + LTR26 LTR ERV1 510 594 -9 311 239 0 18 chr1 242205950 242206059 -458294 + L1MA6 LINE L1 6193 6299 -1 285 29 0 0 chr1 242206494 242206528 -457825 + (CA)n Simple_repeat Simple_repeat 1 34 0 1072 230 34 84 chr1 242206545 242206984 -457369 + MER45R DNA AcHobo 294 710 -871 1845 159 44 8 chr1 242207039 242207423 -456930 + L1 LINE L1 4462 4859 -1287 1775 199 21 42 chr1 242207427 242207858 -456495 - L1MA3 LINE L1 -1 6304 5883 712 207 12 12 chr1 242207848 242208017 -456336 + L1 LINE L1 4849 5017 -1129 * 33291 67 6 4 chr1 242209734 242214010 -450343 - Harlequin LTR ERV1 -641 6255 1972 214 255 0 0 chr1 242214954 242215005 -449348 + (ATG)n Simple_repeat Simple_repeat 3 53 0 674 269 102 35 chr1 242215772 242216055 -448298 + MER31-int LTR ERV1 3815 4116 -820 215 213 13 0 chr1 242217007 242217082 -447271 + (TA)n Simple_repeat Simple_repeat 1 76 0 2466 214 45 0 chr1 242217505 242218083 -446270 - L1MB3 LINE L1 -2 6181 5578 256 239 0 30 chr1 242218109 242218176 -446177 + Tigger5 DNA MER2_type 2259 2323 0 449 191 12 0 chr1 242218230 242218314 -446039 + Tigger5 DNA MER2_type 2238 2322 -1 706 268 22 9 chr1 242218360 242218591 -445762 - L1MB3 LINE L1 -1108 5038 4805 314 60 0 40 chr1 242218596 242218646 -445707 + (TTCTCC)n Simple_repeat Simple_repeat 5 52 0 1547 207 17 3 chr1 242218659 242218959 -445394 - AluJb SINE Alu -8 304 1 332 197 28 0 chr1 242218959 242219030 -445323 - L1MB3 LINE L1 -1327 4819 4747 * 1507 174 11 0 chr1 242219026 242219337 -445016 + L1M4 LINE L1 4064 4377 -1769 21 0 0 0 chr1 242219630 242219651 -444702 + AT_rich Low_complexity Low_complexity 1 21 0 215 59 0 29 chr1 242219657 242219691 -444662 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 325 49 0 0 chr1 242219691 242219732 -444621 - L1PA4 LINE L1 -11 6144 6104 252 33 0 0 chr1 242219770 242219800 -444553 + L1PA4 LINE L1 6068 6097 -58 222 105 0 0 chr1 242221268 242221306 -443047 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 21 71 0 0 chr1 242222399 242222441 -441912 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 242222612 242222634 -441719 + AT_rich Low_complexity Low_complexity 1 22 0 683 53 53 0 chr1 242222643 242222737 -441616 - HY3 scRNA scRNA -2 99 1 247 236 0 0 chr1 242222738 242222793 -441560 - L1MA4 LINE L1 -47 6253 6199 333 217 12 24 chr1 242223467 242223527 -440826 + FRAM/FAM SINE Alu 1 58 -108 1089 278 37 29 chr1 242223527 242223960 -440393 - LTR26E LTR ERV1 0 603 168 244 301 16 8 chr1 242224161 242224284 -440069 + L1M4 LINE L1 4559 4682 -1464 1224 202 91 8 chr1 242224880 242225231 -439122 - L1MA9 LINE L1 -46 6266 5887 2433 59 0 3 chr1 242225318 242225622 -438731 - AluY SINE Alu -8 303 1 1323 199 5 8 chr1 242225919 242226212 -438141 - L1PA16 LINE L1 -196 5972 5679 1363 71 5 49 chr1 242226312 242226496 -437857 - AluSp SINE Alu -134 179 4 920 190 10 30 chr1 242226569 242226769 -437584 - AluJb SINE Alu -32 280 85 4746 155 34 10 chr1 242226833 242227704 -436649 - Tigger3(Golem) DNA MER2_type 0 3029 2138 2140 99 7 7 chr1 242227868 242228172 -436181 - AluSg SINE Alu -4 306 3 315 293 86 93 chr1 242228481 242228576 -435777 - L1MC/D LINE L1 -2183 5625 5531 1874 159 31 3 chr1 242228576 242228866 -435487 + AluSx SINE Alu 1 298 -14 315 293 86 93 chr1 242228866 242229094 -435259 - L1MC/D LINE L1 -2277 5531 5304 2073 124 0 0 chr1 242229192 242229506 -434847 - AluSx SINE Alu 0 314 1 31 44 0 0 chr1 242229669 242229714 -434639 + AT_rich Low_complexity Low_complexity 1 45 0 190 122 122 0 chr1 242230017 242230058 -434295 - MIR SINE MIR -96 166 121 1700 163 20 43 chr1 242230251 242230601 -433752 - Tigger2a DNA MER2_type -91 343 2 532 228 103 2 chr1 242232907 242233083 -431270 - L1MA9 LINE L1 -6 6162 6074 21 0 0 0 chr1 242233589 242233610 -430743 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr1 242235071 242235101 -429252 + (TA)n Simple_repeat Simple_repeat 2 31 0 420 298 23 0 chr1 242235101 242235232 -429121 + LTR33 LTR ERVL 22 155 -366 264 250 0 0 chr1 242235332 242235408 -428945 + (CCCG)n Simple_repeat Simple_repeat 4 79 0 1238 233 169 3 chr1 242235971 242236319 -428034 + L1MC4 LINE L1 7269 7674 -368 2970 181 48 25 chr1 242236387 242236985 -427368 + LTR9 LTR ERV1 1 612 0 31 82 0 0 chr1 242237061 242237134 -427219 + AT_rich Low_complexity Low_complexity 1 73 0 1550 180 0 43 chr1 242237441 242237741 -426612 - AluJb SINE Alu -25 287 1 268 315 63 31 chr1 242238098 242238225 -426128 + HAL1 LINE L1 755 885 -1622 1910 222 35 74 chr1 242238249 242238817 -425536 - MLT2B3 LTR ERVL -8 546 1 4500 211 190 27 chr1 242238947 242240069 -424284 + L1M1 LINE L1 3313 4251 -3314 1969 121 6 51 chr1 242240069 242240383 -423970 - AluSq SINE Alu -13 300 1 4500 211 190 27 chr1 242240383 242241164 -423189 + L1M1 LINE L1 4251 5536 -2029 848 219 29 0 chr1 242241168 242241373 -422980 + L1MA9 LINE L1 6064 6274 -38 396 265 61 0 chr1 242241403 242241535 -422818 + L2 LINE L2 2709 2848 -466 30 0 0 0 chr1 242241910 242241940 -422413 + AT_rich Low_complexity Low_complexity 1 30 0 4620 141 60 7 chr1 242241940 242242794 -421559 - L1MA3 LINE L1 0 6305 5407 2040 125 0 7 chr1 242244198 242244502 -419851 - AluSx SINE Alu -10 302 1 23 54 0 0 chr1 242245120 242245157 -419196 + AT_rich Low_complexity Low_complexity 1 37 0 197 146 21 0 chr1 242246911 242246959 -417394 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr1 242247401 242247429 -416924 + AT_rich Low_complexity Low_complexity 1 28 0 187 205 26 0 chr1 242248234 242248273 -416080 + MIR SINE MIR 164 203 -59 3261 39 0 0 chr1 242249119 242249509 -414844 + L1PA3 LINE L1 5766 6155 0 25 0 0 0 chr1 242249509 242249534 -414819 + AT_rich Low_complexity Low_complexity 1 25 0 13604 28 0 0 chr1 242249684 242252060 -412293 + L1PA3 LINE L1 3776 6152 -3 317 350 55 25 chr1 242252264 242252464 -411889 - L2 LINE L2 -2724 590 385 296 276 35 17 chr1 242253142 242253258 -411095 + L2 LINE L2 2460 2577 -737 43 92 0 0 chr1 242254037 242254157 -410196 + AT_rich Low_complexity Low_complexity 1 120 0 24 32 0 0 chr1 242254363 242254394 -409959 + AT_rich Low_complexity Low_complexity 1 31 0 200 94 19 75 chr1 242254453 242254506 -409847 + (TTTTTA)n Simple_repeat Simple_repeat 6 55 0 333 197 0 16 chr1 242254508 242254569 -409784 + Tigger5 DNA MER2_type 2264 2323 0 2442 185 22 9 chr1 242254579 242255161 -409192 + L1MA8 LINE L1 5202 5789 -502 338 262 8 0 chr1 242255164 242255286 -409067 + (TA)n Simple_repeat Simple_repeat 2 124 0 2126 167 71 4 chr1 242255286 242255752 -408601 + L1MA8 LINE L1 5782 6278 -13 4833 68 6 0 chr1 242255862 242256494 -407859 + L1PA7 LINE L1 5516 6151 -3 24 0 0 0 chr1 242256568 242256592 -407761 + AT_rich Low_complexity Low_complexity 1 24 0 32 57 0 0 chr1 242256856 242256909 -407444 + AT_rich Low_complexity Low_complexity 1 53 0 8484 32 7 0 chr1 242258076 242259921 -404432 - L1PA3 LINE L1 0 6155 4300 5182 21 2 0 chr1 242259920 242260548 -403805 + L1PA3 LINE L1 3664 4292 -1854 * 1573 127 0 0 chr1 242261110 242261346 -403007 + L1PA16 LINE L1 5922 6157 -9 1948 156 31 26 chr1 242261363 242261753 -402600 - L1MA8 LINE L1 -7 6284 5893 687 91 0 0 chr1 242263446 242263545 -400808 - L1MA8 LINE L1 -655 5649 5551 843 83 17 0 chr1 242263545 242263665 -400688 + L1MA2 LINE L1 6183 6304 0 256 293 21 14 chr1 242264418 242264558 -399795 - L1MEc LINE L1 -5217 1179 1039 802 255 28 15 chr1 242264644 242264970 -399383 + L1MB4 LINE L1 4865 5194 -952 1124 237 26 20 chr1 242265047 242265389 -398964 - MLT1A1 LTR MaLR -18 347 4 1822 234 38 38 chr1 242265393 242265883 -398470 + L1 LINE L1 3068 3560 -2586 1759 203 0 3 chr1 242265883 242266178 -398175 - AluJb SINE Alu -18 294 1 1822 234 38 38 chr1 242266178 242266451 -397902 + L1 LINE L1 3559 3831 -2315 1053 189 78 96 chr1 242266454 242266787 -397566 - MER66A LTR ERV1 -3 475 149 1264 190 97 0 chr1 242266956 242267214 -397139 - MER66A-int LTR ERV1 0 6676 6394 4243 223 122 103 chr1 242267219 242269664 -394689 - MER66-int LTR ERV1 -1748 4928 2437 8961 185 46 9 chr1 242269711 242271497 -392856 - MER66-int LTR ERV1 -4515 2161 310 2643 90 18 3 chr1 242271505 242271892 -392461 + MLT2A2 LTR ERVL 1 393 -60 206 200 0 0 chr1 242271893 242271928 -392425 + (TG)n Simple_repeat Simple_repeat 2 36 0 327 311 0 0 chr1 242271928 242272018 -392335 + L1MC4 LINE L1 6614 6703 -1339 327 311 0 0 chr1 242271990 242272080 -392273 - L1MC4 LINE L1 -1339 6703 6614 361 75 0 0 chr1 242272091 242272144 -392209 + MLT2A2 LTR ERVL 401 453 0 30646 170 25 19 chr1 242272145 242273121 -391232 + ERVL-A2-A2 LTR ERVL 2 970 -4794 2142 135 3 0 chr1 242273121 242273424 -390929 + AluSq SINE Alu 1 304 -9 30646 170 25 19 chr1 242273424 242278164 -386189 + ERVL-A2-A2 LTR ERVL 970 5755 -9 2374 122 22 22 chr1 242278166 242278567 -385786 + MLT2A2 LTR ERVL 1 401 -52 2118 142 0 7 chr1 242278651 242278960 -385393 + AluSx SINE Alu 1 307 -5 1138 196 61 30 chr1 242278960 242279323 -385030 + L1MB4 LINE L1 5183 5573 -598 9989 145 17 13 chr1 242279440 242281956 -382397 - L1PA10 LINE L1 -12 6156 3630 1699 152 0 70 chr1 242281956 242282271 -382082 + AluSx SINE Alu 1 293 -19 9989 145 17 13 chr1 242282271 242282341 -382012 - L1PA10 LINE L1 -2538 3630 3562 746 218 58 45 chr1 242382616 242382951 -281402 + LTR35 LTR ERV1 351 618 0 1963 134 134 18 chr1 242383049 242383430 -280923 + MSTA LTR MaLR 3 427 -1 490 278 98 19 chr1 242383444 242383761 -280592 - L1ME3A LINE L1 -208 5962 5621 341 301 18 18 chr1 242383765 242383928 -280425 - L1ME3A LINE L1 -744 5420 5258 1007 308 170 46 chr1 242384506 242385677 -278676 + L2 LINE L2 2007 3308 -5 314 315 55 55 chr1 242385696 242385915 -278438 - L1ME3A LINE L1 -1299 4847 4629 180 77 0 0 chr1 242385936 242385962 -278391 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 229 140 20 20 chr1 242386234 242386284 -278069 - MLT1J2 LTR MaLR -38 412 363 1076 173 118 4 chr1 242386327 242386581 -277772 + L1MB4 LINE L1 5651 5933 -247 2767 134 12 15 chr1 242386582 242387046 -277307 + LTR3b LTR ERVK 1 500 0 657 245 100 10 chr1 242387240 242387440 -276913 + HERVK3 LTR ERVK 55 272 -6971 3035 201 43 77 chr1 242387574 242388838 -275515 + HERVK3 LTR ERVK 1321 5445 -500 280 151 0 0 chr1 242388907 242388960 -275393 + LTR3b LTR ERVK 2 54 -383 260 307 59 33 chr1 242389147 242389300 -275053 - L1ME LINE L1 -335 5786 5630 3140 222 156 2 chr1 242390113 242391217 -273136 - L1 LINE L1 -1994 4152 2879 236 286 64 29 chr1 242391243 242391414 -272939 + L1M4 LINE L1 2561 2737 -3409 259 279 81 12 chr1 242391423 242391595 -272758 + L1M4 LINE L1 2942 3125 -3021 622 149 112 13 chr1 242391730 242391934 -272419 - L1MA7 LINE L1 -3 6288 6064 1255 167 26 4 chr1 242392014 242392247 -272106 - L1MA7 LINE L1 -446 5845 5608 * 8358 187 40 39 chr1 242392239 242395020 -269333 + L1PB1 LINE L1 2997 5771 -380 295 259 0 11 chr1 242395023 242395172 -269181 + (TA)n Simple_repeat Simple_repeat 2 150 -23 2467 102 14 0 chr1 242395172 242395536 -268817 + L1PB1 LINE L1 5782 6150 -1 295 259 0 11 chr1 242395536 242395560 -268793 + (TA)n Simple_repeat Simple_repeat 150 173 0 1634 188 0 24 chr1 242395563 242395855 -268498 + AluJo SINE Alu 3 287 -25 213 333 98 33 chr1 242396367 242396520 -267833 - L2 LINE L2 -36 3277 3115 226 200 0 0 chr1 242397355 242397390 -266963 - MER2 DNA MER2_type -20 325 291 5775 165 46 18 chr1 242397458 242399548 -264805 - L1MA2 LINE L1 -1 7722 5571 186 156 0 0 chr1 242399548 242399593 -264760 + (TA)n Simple_repeat Simple_repeat 1 45 0 414 194 0 0 chr1 242399603 242399675 -264678 - L1MA2 LINE L1 -1982 5583 5512 3428 204 48 19 chr1 242399680 242400570 -263783 - L1MA2 LINE L1 -6459 1106 17 1279 172 21 0 chr1 242400570 242400803 -263550 - MER2 DNA MER2_type -107 238 1 2189 183 58 11 chr1 242401174 242401643 -262710 - MER4D LTR ERV1 -412 491 1 208 269 0 0 chr1 242401987 242402039 -262314 + A-rich Low_complexity Low_complexity 1 52 0 210 125 16 31 chr1 242402375 242402439 -261914 + T-rich Low_complexity Low_complexity 2 64 0 966 186 65 9 chr1 242404833 242405064 -259289 + MER4D-int LTR ERV1 1503 1746 -6374 731 184 51 31 chr1 242405062 242405351 -259002 + MER4D-int LTR ERV1 1910 4346 -534 * 2327 168 77 0 chr1 242405381 242405798 -258555 + LTR47A LTR ERVL 4 452 0 1045 153 27 137 chr1 242405801 242405889 -258464 + MER4D-int LTR ERV1 2248 2344 -4254 847 114 14 14 chr1 242405889 242406029 -258324 + L1PA15 LINE L1 6020 6159 -6 1045 153 27 137 chr1 242406029 242406157 -258196 + MER4D-int LTR ERV1 2344 2485 -4113 2345 107 0 0 chr1 242406157 242406466 -257887 + AluY SINE Alu 1 309 -2 1045 153 27 137 chr1 242406466 242406708 -257645 + MER4D-int LTR ERV1 2485 3695 -2903 2770 195 84 3 chr1 242406712 242407316 -257037 - MER39B LTR ERV1 0 653 1 837 200 59 32 chr1 242407406 242407828 -256525 + MER4D-int LTR ERV1 3728 4183 -2148 1819 176 179 77 chr1 242408210 242408887 -255466 - LTR1B LTR ERV1 -80 746 1 350 214 14 0 chr1 242408913 242408983 -255370 + MER4D-int LTR ERV1 3883 3953 -4167 420 200 125 31 chr1 242409130 242409290 -255063 + MER4D-int LTR ERV1 4791 4965 -1366 2963 202 40 69 chr1 242409294 242410137 -254216 + MER4D-int LTR ERV1 5940 6758 0 4378 162 58 45 chr1 242410140 242411031 -253322 + MER4D LTR ERV1 1 903 0 485 187 29 0 chr1 242411033 242411172 -253181 + (TA)n Simple_repeat Simple_repeat 2 144 0 480 337 191 14 chr1 242411172 242411736 -252617 + L2 LINE L2 1705 2368 -946 4554 30 7 0 chr1 242411852 242412395 -251958 - L1PA4 LINE L1 -1 6154 5608 671 190 8 0 chr1 242412631 242412752 -251601 - AluJb SINE Alu -6 306 185 670 336 145 33 chr1 242412859 242413499 -250854 + L2 LINE L2 2394 3098 -215 275 221 168 0 chr1 242413700 242413795 -250558 - L1ME3A LINE L1 -203 5967 5857 1863 197 38 34 chr1 242413925 242414372 -249981 - MSTB2 LTR MaLR -8 449 1 5293 235 57 57 chr1 242414372 242416023 -248330 - MSTB2-int LTR MaLR 0 1651 1 2055 173 56 38 chr1 242416023 242416469 -247884 - MSTB2 LTR MaLR 0 457 4 286 259 24 24 chr1 242416598 242416683 -247670 + L2 LINE L2 3161 3245 -68 371 227 30 13 chr1 242417648 242417783 -246570 - MER21A LTR ERV1 -1 905 733 2041 201 68 68 chr1 242418361 242419218 -245135 - MER21A LTR ERV1 -152 779 17 199 349 138 7 chr1 242421430 242421582 -242771 - MIR SINE MIR -50 212 41 210 202 24 12 chr1 242421806 242421890 -242463 + (TA)n Simple_repeat Simple_repeat 1 85 0 240 239 15 0 chr1 242423030 242423097 -241256 + (TA)n Simple_repeat Simple_repeat 1 68 0 246 389 64 0 chr1 242423481 242423638 -240715 + MIR SINE MIR 26 192 -70 500 338 93 15 chr1 242424420 242424763 -239590 - L3 LINE CR1 -188 1389 1020 285 280 93 19 chr1 242425302 242425409 -238944 + MIR SINE MIR 34 148 -60 22 0 0 0 chr1 242427504 242427526 -236827 + AT_rich Low_complexity Low_complexity 1 22 0 186 191 0 0 chr1 242427629 242427676 -236677 + (TG)n Simple_repeat Simple_repeat 2 48 0 2144 119 3 10 chr1 242428318 242428621 -235732 - AluSx SINE Alu -11 301 1 1006 204 98 49 chr1 242429005 242429333 -235020 - MER2 DNA MER2_type 0 344 1 1791 192 0 3 chr1 242429626 242429928 -234425 + AluJo SINE Alu 1 301 -11 1451 174 102 4 chr1 242430055 242430320 -234033 - AluSx SINE Alu -21 291 1 2104 117 33 0 chr1 242433441 242433740 -230613 + AluSq SINE Alu 1 309 -4 247 344 129 40 chr1 242434097 242434321 -230032 + MIR SINE MIR 5 248 -14 28 29 0 0 chr1 242434505 242434540 -229813 + AT_rich Low_complexity Low_complexity 1 35 0 222 277 149 21 chr1 242434779 242434920 -229433 - L2 LINE L2 0 3313 3155 21 82 0 0 chr1 242435466 242435515 -228838 + AT_rich Low_complexity Low_complexity 1 49 0 388 342 77 30 chr1 242435601 242436031 -228322 + L1M4 LINE L1 2944 3393 -2753 268 299 23 23 chr1 242436070 242436247 -228106 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 1161 60 0 0 chr1 242436247 242436396 -227957 + L1PA5 LINE L1 6002 6150 -4 27 29 0 0 chr1 242436552 242436586 -227767 + AT_rich Low_complexity Low_complexity 1 34 0 193 256 151 0 chr1 242436891 242436977 -227376 + L2 LINE L2 2947 3045 -227 1811 201 0 7 chr1 242437063 242437372 -226981 - AluJb SINE Alu -3 309 3 249 234 85 21 chr1 242437999 242438093 -226260 + L1ME LINE L1 5506 5605 -516 236 364 50 14 chr1 242438738 242438878 -225475 + L2 LINE L2 3109 3253 -19 1117 181 34 4 chr1 242439370 242439607 -224746 + L1PA16 LINE L1 5918 6161 -5 24 0 0 0 chr1 242439607 242439631 -224722 + AT_rich Low_complexity Low_complexity 1 24 0 414 187 0 11 chr1 242441138 242441229 -223124 - AluS SINE Alu -223 90 1 358 267 59 64 chr1 242441405 242441592 -222761 - HAL1b LINE L1 -414 934 749 191 236 14 0 chr1 242441867 242441939 -222414 + (TA)n Simple_repeat Simple_repeat 2 74 0 8275 196 20 45 chr1 242442090 242443989 -220364 + L1M1 LINE L1 10 1860 -5705 4556 139 39 32 chr1 242444154 242445088 -219265 - L1PA16 LINE L1 -17 6149 5211 6805 80 0 0 chr1 242445105 242446410 -217943 - L1PA7 LINE L1 -5 6149 4845 11147 102 3 10 chr1 242446410 242448147 -216206 + L1M1 LINE L1 3081 4806 -2759 2866 257 18 61 chr1 242448145 242449285 -215068 - L1 LINE L1 -920 5226 4137 * 289 254 0 28 chr1 242449268 242449339 -215014 - L1PA15-16 LINE L1 -5322 1527 1459 * 231 239 76 11 chr1 242449369 242449461 -214892 - MER117 DNA MER1_type -39 158 61 2890 183 81 26 chr1 242450772 242451504 -212849 - L1MC2 LINE L1 -16 6328 5557 4005 147 21 26 chr1 242452326 242453048 -211305 + LTR62 LTR ERVK 1 718 -1 2935 149 97 15 chr1 242454758 242455357 -208996 - MER4D LTR ERV1 -249 654 7 191 36 36 0 chr1 242455764 242455792 -208561 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2489 161 65 0 chr1 242455792 242456257 -208096 + MER4D LTR ERV1 18 512 -391 338 111 0 0 chr1 242456257 242456311 -208042 - MER4D LTR ERV1 -250 653 600 2503 147 25 97 chr1 242456352 242456958 -207395 + MER4D LTR ERV1 163 724 -179 7222 120 10 7 chr1 242457058 242458670 -205683 - HERVH LTR ERV1 -2287 4242 3492 846 142 20 0 chr1 242458660 242458808 -205545 - HERVH LTR ERV1 -4423 3290 3140 * 10959 101 7 9 chr1 242458802 242460493 -203860 - HERVH LTR ERV1 -4726 2987 1301 3143 96 9 0 chr1 242460487 242460944 -203409 - HERVH LTR ERV1 -7252 461 1 * 2657 101 96 0 chr1 242460947 242461355 -202998 - LTR7 LTR ERV1 -3 447 1 1209 122 49 0 chr1 242461364 242461569 -202784 - L1P5 LINE L1 -395 5756 5542 * 1648 193 12 3 chr1 242461562 242461906 -202447 - L1MA5 LINE L1 -239 6061 5715 1325 175 70 4 chr1 242461906 242462134 -202219 - AluSg SINE Alu -67 243 1 3814 192 16 26 chr1 242462135 242463307 -201046 - L1MA5 LINE L1 -699 5606 4451 693 242 11 22 chr1 242463310 242463488 -200865 - MER4D LTR ERV1 -676 196 21 1479 196 49 0 chr1 242464126 242464412 -199941 - AluJb SINE Alu -12 300 1 215 250 0 0 chr1 242465087 242465139 -199214 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 654 241 0 0 chr1 242465734 242465879 -198474 - L1MA5 LINE L1 -3597 2549 2405 358 139 23 0 chr1 242466720 242466806 -197547 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 266 291 73 61 chr1 242467252 242467417 -196936 + L2 LINE L2 3073 3239 -74 205 260 125 10 chr1 242467544 242467640 -196713 - MIR SINE MIR -67 141 35 1019 67 0 33 chr1 242467848 242467998 -196355 - L1PA13 LINE L1 -2 6161 6017 214 303 101 0 chr1 242468138 242468247 -196106 + MIR SINE MIR 133 252 -10 200 302 62 31 chr1 242468281 242468377 -195976 - MIR SINE MIR 0 262 164 26 50 0 0 chr1 242468697 242468737 -195616 + AT_rich Low_complexity Low_complexity 1 40 0 295 303 9 28 chr1 242470785 242470894 -193459 - MLT1I LTR MaLR -19 390 284 262 214 35 12 chr1 242472535 242472708 -191645 + (TA)n Simple_repeat Simple_repeat 1 177 0 324 209 43 9 chr1 242472866 242472981 -191372 + (TA)n Simple_repeat Simple_repeat 1 119 0 656 323 60 13 chr1 242473113 242473345 -191008 - MLT1G LTR MaLR -286 304 62 26 30 0 0 chr1 242473615 242473648 -190705 + AT_rich Low_complexity Low_complexity 1 33 0 1443 170 63 121 chr1 242473680 242473895 -190458 - Tigger3(Golem) DNA MER2_type -1 3027 2801 267 103 0 0 chr1 242473895 242473934 -190419 + (TA)n Simple_repeat Simple_repeat 1 39 0 1443 170 63 121 chr1 242473934 242474082 -190271 - Tigger3(Golem) DNA MER2_type -227 2801 5 24 0 0 0 chr1 242474347 242474371 -189982 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr1 242474869 242474901 -189452 + AT_rich Low_complexity Low_complexity 1 32 0 30 27 0 0 chr1 242475029 242475066 -189287 + AT_rich Low_complexity Low_complexity 1 37 0 202 246 16 0 chr1 242475197 242475258 -189095 + (TTAA)n Simple_repeat Simple_repeat 1 62 0 263 324 22 7 chr1 242475258 242475397 -188956 + L1ME LINE L1 5388 5528 -634 1416 139 10 0 chr1 242475435 242475644 -188709 - AluSg/x SINE Alu -7 303 93 1414 204 65 7 chr1 242475919 242476194 -188159 - AluJo SINE Alu -21 291 1 378 265 164 36 chr1 242476410 242476508 -187845 + L1MEc LINE L1 2155 2239 -4157 529 100 0 0 chr1 242476508 242476588 -187765 + L1MA4A LINE L1 6217 6296 -7 378 265 164 36 chr1 242476588 242476708 -187645 + L1MEc LINE L1 2239 2401 -3995 5369 202 87 30 chr1 242476949 242479808 -184545 - L1MA9 LINE L1 -82 6230 2879 332 267 97 15 chr1 242479864 242480215 -184138 + L1MEc LINE L1 2659 3220 -2995 631 157 105 6 chr1 242480338 242480510 -183843 - L1MA7 LINE L1 -3 6288 6100 262 206 62 0 chr1 242480510 242480607 -183746 + (TA)n Simple_repeat Simple_repeat 2 104 0 1237 171 26 4 chr1 242480625 242480853 -183500 - L1MA7 LINE L1 -451 5840 5608 * 9098 192 43 7 chr1 242480849 242483544 -180809 + L1PB1 LINE L1 3003 5790 -361 488 186 0 8 chr1 242483563 242483675 -180678 + (TA)n Simple_repeat Simple_repeat 2 114 -10 2446 87 34 0 chr1 242483675 242484033 -180320 + L1PB1 LINE L1 5782 6151 0 488 186 0 8 chr1 242484033 242484044 -180309 + (TA)n Simple_repeat Simple_repeat 114 124 0 1651 185 0 24 chr1 242484058 242484350 -180003 + AluJo SINE Alu 3 287 -25 223 348 84 32 chr1 242484868 242485023 -179330 - L2 LINE L2 -36 3277 3115 5657 174 39 21 chr1 242485953 242488050 -176303 - L1MA2 LINE L1 -1 7722 5664 405 0 0 0 chr1 242488050 242488095 -176258 + (TG)n Simple_repeat Simple_repeat 2 46 0 387 0 0 0 chr1 242488094 242488137 -176216 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 5657 174 39 21 chr1 242488095 242488201 -176152 - L1MA2 LINE L1 -2059 5664 5522 3380 214 49 9 chr1 242488216 242489097 -175256 - L1MA2 LINE L1 -6459 1106 17 1123 191 21 13 chr1 242489097 242489333 -175020 - MER2 DNA MER2_type -107 238 1 2392 173 40 19 chr1 242489709 242490190 -174163 - MER4D LTR ERV1 -412 491 1 252 0 0 0 chr1 242490969 242490997 -173356 + (T)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr1 242494660 242494685 -169668 + AT_rich Low_complexity Low_complexity 1 25 0 5365 212 86 12 chr1 242494703 242496393 -167960 - L1M2 LINE L1 -676 5524 3697 2301 127 43 69 chr1 242496394 242496857 -167496 + MER4C LTR ERV1 15 465 0 967 219 49 39 chr1 242496857 242497163 -167190 - L1M2 LINE L1 -2327 3707 3399 827 110 0 0 chr1 242497168 242497277 -167076 - AluSg/x SINE Alu -9 303 195 1388 215 27 12 chr1 242497284 242497619 -166734 - L1MA8 LINE L1 -136 6155 5816 717 229 86 113 chr1 242497604 242498351 -166002 - L1M2 LINE L1 -4520 1445 812 * 1179 223 11 14 chr1 242498461 242498739 -165614 - L1MA8 LINE L1 -199 6092 5816 * 2037 288 64 53 chr1 242498724 242500662 -163691 - L1M2c LINE L1 -4522 1513 12 867 275 19 10 chr1 242500743 242500950 -163403 - MLT1-int LTR MaLR -201 1170 962 29 70 0 0 chr1 242501051 242501108 -163245 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr1 242501253 242501276 -163077 + AT_rich Low_complexity Low_complexity 1 23 0 221 379 74 0 chr1 242501735 242501925 -162428 + L2 LINE L2 2228 2431 -883 695 332 88 23 chr1 242502374 242502840 -161513 + L2 LINE L2 2781 3275 -38 23 68 0 0 chr1 242503070 242503114 -161239 + AT_rich Low_complexity Low_complexity 1 44 0 1942 137 7 3 chr1 242503188 242503487 -160866 - AluSq SINE Alu -13 300 1 239 255 128 21 chr1 242504591 242504685 -159668 + L2 LINE L2 3197 3300 -13 225 357 25 22 chr1 242504906 242505094 -159259 + MIR SINE MIR 19 204 -58 228 314 52 35 chr1 242506020 242506192 -158161 + MIR SINE MIR 78 252 -10 207 228 18 0 chr1 242507590 242507647 -156706 + (TA)n Simple_repeat Simple_repeat 1 58 0 235 246 53 53 chr1 242507915 242508029 -156324 - MIR SINE MIR -40 222 109 256 286 92 53 chr1 242509858 242510141 -154212 + L1MC4 LINE L1 7746 8039 -3 25 51 0 0 chr1 242510549 242510588 -153765 + AT_rich Low_complexity Low_complexity 1 39 0 233 340 85 20 chr1 242510961 242511114 -153239 - L2 LINE L2 -571 2743 2581 5142 218 94 18 chr1 242511551 242513866 -150487 + L1M1 LINE L1 3316 5793 -1772 5012 188 32 16 chr1 242514028 242515286 -149067 + L1 LINE L1 4138 5425 -743 4806 135 41 8 chr1 242515956 242517817 -146536 - L1PBa LINE L1 -4780 2083 1 270 235 37 49 chr1 242518353 242518434 -145919 + MIR SINE MIR 15 94 -168 1879 151 0 0 chr1 242518925 242519231 -145122 + AluSx SINE Alu 1 306 0 1163 253 99 26 chr1 242519838 242520619 -143734 - L1M1 LINE L1 -4525 2971 1877 1391 282 20 61 chr1 242520638 242521245 -143108 - L1M1 LINE L1 -6439 1050 469 * 1722 266 65 14 chr1 242521243 242522015 -142338 - L1M4 LINE L1 -925 5221 4411 238 250 39 19 chr1 242522001 242522105 -142248 - L1MCa LINE L1 -2701 3863 3758 * 279 241 11 23 chr1 242522316 242522403 -141950 - L1MCa LINE L1 -3775 2789 2704 3114 223 9 43 chr1 242522571 242523389 -140964 + L1P LINE L1 3292 4081 -2065 24 32 0 0 chr1 242523493 242523524 -140829 + AT_rich Low_complexity Low_complexity 1 31 0 1292 249 42 15 chr1 242523560 242523966 -140387 - L1MA9 LINE L1 -38 6274 5858 620 304 121 49 chr1 242524212 242524558 -139795 - L2 LINE L2 0 3313 2943 728 176 25 0 chr1 242524673 242524832 -139521 - L1MA8 LINE L1 -3 6288 6126 259 313 0 26 chr1 242526216 242526331 -138022 + L1 LINE L1 2461 2572 -3574 * 2215 228 121 10 chr1 242526316 242527145 -137208 + L1 LINE L1 2868 3788 -2358 29 47 0 0 chr1 242527202 242527245 -137108 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr1 242527266 242527302 -137051 + AT_rich Low_complexity Low_complexity 1 36 0 202 261 0 0 chr1 242528410 242528456 -135897 + L2 LINE L2 3190 3235 -37 743 166 38 19 chr1 242528462 242528619 -135734 - L1MB1 LINE L1 -16 6173 6014 469 306 130 33 chr1 242529845 242530175 -134178 - L2 LINE L2 -4 3309 2948 181 213 27 80 chr1 242530169 242530244 -134109 - L2 LINE L2 -1079 2235 2165 * 229 268 24 0 chr1 242530298 242530380 -133973 - L1MCa LINE L1 -5528 1036 953 582 197 80 22 chr1 242530422 242530559 -133794 - MLT1C LTR MaLR -166 301 157 302 214 57 0 chr1 242530560 242530630 -133723 - MER67A LTR ERV1 -2 541 468 1698 258 49 87 chr1 242530677 242531436 -132917 - MER67A-int LTR ERV1 -4158 778 49 1111 240 48 30 chr1 242531519 242531856 -132497 - MER67A LTR ERV1 0 543 201 1415 198 79 18 chr1 242531856 242532185 -132168 + MLT1A1 LTR MaLR 1 349 -16 779 185 23 29 chr1 242532194 242532367 -131986 - MER67A LTR ERV1 -355 188 17 476 246 9 0 chr1 242532367 242532477 -131876 + MER67A LTR ERV1 402 512 -31 816 173 6 31 chr1 242532482 242532644 -131709 - MLT1C LTR MaLR -307 160 3 1000 257 43 30 chr1 242532647 242533118 -131235 - L1MCa LINE L1 -5113 932 502 2873 70 5 0 chr1 242533118 242533501 -130852 - L1PA5 LINE L1 0 6154 5770 16976 32 7 0 chr1 242533535 242536347 -128006 - L1PA3 LINE L1 0 6155 3322 750 266 26 22 chr1 242536473 242536699 -127654 - MER39 LTR ERV1 -232 475 249 4195 163 90 12 chr1 242536753 242537588 -126765 - MER4D LTR ERV1 -3 900 1 207 0 0 0 chr1 242537989 242538012 -126341 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2602 147 76 7 chr1 242538012 242538475 -125878 + MER4D LTR ERV1 18 512 -391 319 149 104 0 chr1 242538475 242538542 -125811 - MER4D LTR ERV1 -250 653 580 2011 166 14 14 chr1 242538569 242538937 -125416 + MER4D LTR ERV1 163 530 -373 1993 126 51 119 chr1 242539037 242539491 -124862 + MER4D LTR ERV1 481 903 0 340 204 32 86 chr1 242539493 242539586 -124767 + MER4D-int LTR ERV1 4 91 -6667 572 101 53 51 chr1 242539587 242539721 -124632 - MER51C LTR ERV1 0 640 1 987 200 70 37 chr1 242539725 242539995 -124358 + MER4D-int LTR ERV1 89 367 -6391 3822 170 85 59 chr1 242540068 242541654 -122699 + MER4D-int LTR ERV1 729 3950 -3255 2312 168 77 0 chr1 242541685 242542102 -122251 + LTR47A LTR ERVL 4 452 0 396 181 0 0 chr1 242542108 242542191 -122162 + MER4-int LTR ERV1 3306 3388 -3210 792 125 17 0 chr1 242542193 242542313 -122040 + L1PA15 LINE L1 6020 6141 -24 1025 126 0 0 chr1 242542313 242542464 -121889 + L1MA1 LINE L1 6148 6298 -4 1191 173 96 36 chr1 242542507 242542756 -121597 + MSTC LTR MaLR 42 305 -123 568 223 0 0 chr1 242543530 242543642 -120711 + MSTC LTR MaLR 264 375 -53 21 0 0 0 chr1 242543864 242543885 -120468 + AT_rich Low_complexity Low_complexity 1 21 0 396 69 0 0 chr1 242544418 242544476 -119877 + L1PA16 LINE L1 6107 6164 -2 25 0 0 0 chr1 242544514 242544539 -119814 + AT_rich Low_complexity Low_complexity 1 25 0 250 176 44 44 chr1 242545151 242545310 -119043 + (TA)n Simple_repeat Simple_repeat 2 160 0 361 315 9 0 chr1 242546045 242546153 -118200 + L2 LINE L2 3136 3244 -28 795 226 22 44 chr1 242547531 242547806 -116547 + L1MB8 LINE L1 5822 6090 -88 602 279 105 55 chr1 242548259 242548603 -115750 + L2 LINE L2 2953 3313 0 522 301 100 13 chr1 242548820 242549049 -115304 + MIR SINE MIR 13 261 -1 193 330 66 0 chr1 242549465 242549556 -114797 + MIR SINE MIR 123 219 -43 708 111 37 0 chr1 242552033 242552141 -112212 - HY1 scRNA scRNA 0 112 1 25 65 0 0 chr1 242552488 242552534 -111819 + AT_rich Low_complexity Low_complexity 1 46 0 180 250 0 0 chr1 242554058 242554106 -110247 + GA-rich Low_complexity Low_complexity 1 48 0 26 74 0 0 chr1 242554536 242554590 -109763 + AT_rich Low_complexity Low_complexity 1 54 0 2235 79 0 26 chr1 242556009 242556312 -108041 + AluY SINE Alu 1 295 -16 789 287 103 16 chr1 242556820 242557256 -107097 - L1ME3A LINE L1 -6 6164 5691 25 83 0 0 chr1 242557403 242557463 -106890 + AT_rich Low_complexity Low_complexity 1 60 0 788 280 84 14 chr1 242557500 242558406 -105947 - L1ME3A LINE L1 -472 5698 4740 407 127 0 56 chr1 242558989 242559060 -105293 + L1MC4 LINE L1 6730 6796 -1246 * 3882 128 41 11 chr1 242559057 242559758 -104595 - L1P LINE L1 -2802 3344 2623 7975 111 27 14 chr1 242559758 242561799 -102554 + L1PA8 LINE L1 4093 6165 -7 596 285 13 0 chr1 242561879 242562030 -102323 + MER63A DNA MER1_type 58 210 0 21 0 0 0 chr1 242562184 242562205 -102148 + AT_rich Low_complexity Low_complexity 1 21 0 1844 125 32 4 chr1 242562212 242562491 -101862 - AluSx SINE Alu -25 287 1 4517 158 54 1 chr1 242562503 242563725 -100628 - L1PA13 LINE L1 -133 6030 4752 24 67 0 0 chr1 242564711 242564756 -99597 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr1 242565443 242565473 -98880 + AT_rich Low_complexity Low_complexity 1 30 0 244 306 94 0 chr1 242566407 242566492 -97861 + L2 LINE L2 3179 3271 -1 257 111 0 22 chr1 242568267 242568312 -96041 + L1P2 LINE L1 5739 5782 -373 * 11177 56 7 6 chr1 242568310 242570589 -93764 + L1P LINE L1 10 2420 -3726 550 136 121 0 chr1 242570893 242571025 -93328 + L1MA7 LINE L1 6142 6289 -2 543 162 0 0 chr1 242571051 242571150 -93203 + L1MA6 LINE L1 6202 6300 0 4567 209 50 11 chr1 242571345 242572477 -91876 + L1PA12 LINE L1 1882 3057 -4524 249 350 0 0 chr1 242572527 242572624 -91729 + L1PA16 LINE L1 1879 1975 -5606 427 202 74 37 chr1 242572642 242572777 -91576 - L1PA12 LINE L1 -5046 2534 2396 3528 199 51 42 chr1 242572778 242577108 -87245 + L1PA16 LINE L1 3082 7601 -3 800 154 100 58 chr1 242577208 242577448 -86905 + L1MA8 LINE L1 6036 6285 -6 428 294 226 23 chr1 242577551 242578364 -85989 + HAL1 LINE L1 74 1051 -1456 405 276 74 82 chr1 242578407 242578664 -85689 + HAL1 LINE L1 1167 1421 -1086 516 282 113 42 chr1 242578716 242579096 -85257 + HAL1 LINE L1 1496 1902 -605 268 248 8 8 chr1 242579172 242579301 -85052 + (TA)n Simple_repeat Simple_repeat 2 130 0 325 130 0 0 chr1 242579302 242579356 -84997 + FRAM/FAM SINE Alu 28 81 -94 2497 176 40 13 chr1 242580053 242580640 -83713 + MER4B LTR ERV1 3 779 0 1960 182 24 0 chr1 242580840 242581219 -83134 - LTR34 LTR ERV1 -37 662 275 1556 108 14 5 chr1 242581221 242581434 -82919 + AluSq SINE Alu 73 287 -26 226 273 45 11 chr1 242581436 242581524 -82829 + L1MD3 LINE L1 7885 7975 -20 309 241 108 103 chr1 242581529 242581732 -82621 + L1ME3A LINE L1 5960 6163 -7 319 252 35 26 chr1 242582622 242582737 -81616 - MIR SINE MIR -128 134 19 875 314 245 23 chr1 242583486 242584337 -80016 + L2 LINE L2 1281 1942 -1372 1562 188 17 7 chr1 242584337 242584624 -79729 - AluJb SINE Alu -22 290 1 875 314 245 23 chr1 242584624 242585009 -79344 + L2 LINE L2 1942 2792 -522 254 330 18 54 chr1 242587012 242587124 -77229 + L2 LINE L2 3197 3304 -9 715 250 20 15 chr1 242587248 242587452 -76901 - L1PB4 LINE L1 0 6156 5952 392 192 152 20 chr1 242588075 242588226 -76127 + MER53 DNA DNA 3 173 -16 1651 176 50 0 chr1 242588721 242589000 -75353 + AluJo SINE Alu 1 293 -19 486 286 204 37 chr1 242589070 242589682 -74671 + L2 LINE L2 2579 3304 -9 1291 234 53 39 chr1 242590342 242590778 -73575 + MLT1D LTR MaLR 5 446 -59 221 262 90 69 chr1 242590877 242591022 -73331 - MIR SINE MIR -8 254 107 374 175 97 35 chr1 242591587 242591701 -72652 + L1MA4 LINE L1 6139 6259 -41 249 301 59 33 chr1 242592431 242592584 -71769 + L1ME LINE L1 5630 5786 -335 187 352 0 0 chr1 242593513 242593584 -70769 - L2 LINE L2 0 3313 3243 2121 110 17 3 chr1 242594583 242594875 -69478 - AluSx SINE Alu -16 296 1 214 277 139 28 chr1 242594901 242595099 -69254 + MIR3 SINE MIR 2 215 -47 31 0 0 0 chr1 242595214 242595245 -69108 + AT_rich Low_complexity Low_complexity 1 31 0 311 284 39 0 chr1 242595395 242595497 -68856 - L1ME3A LINE L1 0 6170 6065 313 277 116 42 chr1 242598704 242598903 -65450 + MIR SINE MIR 4 216 -46 2184 129 0 7 chr1 242599626 242599936 -64417 + AluSq SINE Alu 1 308 -5 342 234 28 9 chr1 242601067 242601174 -63179 + (TG)n Simple_repeat Simple_repeat 2 110 0 270 81 0 0 chr1 242601562 242601599 -62754 + (A)n Simple_repeat Simple_repeat 1 37 0 1583 187 146 19 chr1 242602888 242603497 -60856 - Tigger7 DNA MER2_type -4 2483 69 190 132 53 26 chr1 242604513 242604551 -59802 - MIR SINE MIR -10 252 214 222 91 0 0 chr1 242604870 242604903 -59450 + (AGGTG)n Simple_repeat Simple_repeat 2 34 0 723 235 11 5 chr1 242606208 242606395 -57958 - MER4C LTR ERV1 0 465 278 1106 165 25 133 chr1 242606452 242606917 -57436 - MER4A LTR ERV1 -203 349 2 2223 115 43 6 chr1 242608159 242608508 -55845 - THE1B LTR MaLR -2 362 1 1198 199 40 23 chr1 242608544 242608846 -55507 + MER44D DNA MER2_type 426 604 -1 461 254 135 1 chr1 242611138 242611420 -52933 + MER33 DNA MER1_type 1 363 0 22 0 0 0 chr1 242613154 242613176 -51177 + AT_rich Low_complexity Low_complexity 1 22 0 321 150 184 27 chr1 242615887 242616034 -48319 - MER69 DNA AcHobo -7 2519 2350 296 194 244 25 chr1 242616128 242616288 -48065 - MER69 DNA AcHobo -314 2212 2018 682 181 87 181 chr1 242616334 242616805 -47548 + LTR23 LTR ERV1 11 437 0 561 197 61 14 chr1 242616805 242616952 -47401 - L1MB4 LINE L1 -98 6082 5929 1588 201 79 13 chr1 242616952 242617420 -46933 - LTR3b LTR ERVK 0 500 2 2994 201 56 51 chr1 242617489 242618701 -45652 - HERVK3 LTR ERVK -500 5445 1321 534 249 108 5 chr1 242618837 242619022 -45331 - HERVK3 LTR ERVK -6971 272 69 2535 140 13 16 chr1 242619249 242619700 -44653 - LTR3b LTR ERVK -50 450 1 975 182 119 4 chr1 242619701 242619954 -44399 - L1MB4 LINE L1 -247 5933 5652 180 77 0 0 chr1 242620326 242620352 -44001 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 330 315 68 36 chr1 242620366 242620585 -43768 + L1ME3A LINE L1 4622 4847 -1299 953 311 174 57 chr1 242620604 242622003 -42350 - L2 LINE L2 -5 3308 1752 291 307 18 18 chr1 242622330 242622496 -41857 + L1ME3A LINE L1 5258 5423 -739 387 292 98 13 chr1 242622497 242622812 -41541 + L1ME3A LINE L1 5621 5962 -208 1933 134 137 18 chr1 242622825 242623206 -41147 - MSTA LTR MaLR 0 428 3 681 237 51 38 chr1 242623303 242623638 -40715 - LTR35 LTR ERV1 0 676 351 263 234 63 36 chr1 242623760 242623871 -40482 - LTR35 LTR ERV1 -504 114 1 387 0 0 0 chr1 242624490 242624533 -39820 + (CA)n Simple_repeat Simple_repeat 1 43 0 767 229 18 7 chr1 242625033 242625079 -39274 + L1M4 LINE L1 5445 5489 -639 687 179 40 13 chr1 242625079 242625230 -39123 - L1MB5 LINE L1 -8 6166 6012 767 229 18 7 chr1 242625230 242625386 -38967 + L1M4 LINE L1 5489 5648 -480 4439 186 40 6 chr1 242626174 242627430 -36923 - L1MB5 LINE L1 -743 5403 4213 242 287 77 56 chr1 242627594 242627737 -36616 + L2 LINE L2 2575 2720 -594 236 306 0 71 chr1 242628271 242628356 -35997 + L2 LINE L2 3002 3080 -192 31 26 0 0 chr1 242628586 242628624 -35729 + AT_rich Low_complexity Low_complexity 1 38 0 222 244 61 35 chr1 242630754 242630869 -33484 + MIR SINE MIR 113 230 -32 271 287 16 8 chr1 242631042 242631164 -33189 + (TA)n Simple_repeat Simple_repeat 2 124 0 313 271 108 12 chr1 242632471 242632637 -31716 - MIR SINE MIR -3 259 78 892 206 0 12 chr1 242633403 242633573 -30780 - FAM SINE Alu -7 168 1 21 57 0 0 chr1 242633984 242634019 -30334 + AT_rich Low_complexity Low_complexity 1 35 0 941 195 85 31 chr1 242634997 242635093 -29260 - L1MA9 LINE L1 -38 6274 6185 225 0 0 0 chr1 242635093 242635118 -29235 + (TG)n Simple_repeat Simple_repeat 2 26 0 941 195 85 31 chr1 242635118 242635312 -29041 - L1MA9 LINE L1 -127 6185 5972 904 126 0 0 chr1 242635676 242635811 -28542 - L1PA8 LINE L1 -9 6163 6029 438 0 0 46 chr1 242635911 242635976 -28377 + (TCTCCC)n Simple_repeat Simple_repeat 3 64 0 6899 38 11 11 chr1 242635976 242637231 -27122 + SVA Other Other 53 1386 0 437 82 0 0 chr1 242637543 242637604 -26749 - MADE1 DNA Mariner -19 61 1 726 257 25 18 chr1 242637943 242638223 -26130 + L1M4 LINE L1 2653 2934 -3212 248 127 0 48 chr1 242638315 242638378 -25975 + L1MEc LINE L1 1599 1658 -4738 432 339 78 13 chr1 242638414 242638797 -25556 + HAL1 LINE L1 79 486 -2021 268 260 26 0 chr1 242638842 242638919 -25434 + L1MD3 LINE L1 7889 7967 -28 214 183 29 58 chr1 242639042 242639146 -25207 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 363 44 0 0 chr1 242640612 242640657 -23696 + (TG)n Simple_repeat Simple_repeat 2 46 0 292 343 43 14 chr1 242642265 242642405 -21948 + MER5A DNA MER1_type 36 179 -10 377 356 49 36 chr1 242642644 242642869 -21484 - MIR SINE MIR -22 240 13 2042 139 7 0 chr1 242643420 242643722 -20631 + AluSq SINE Alu 1 304 -9 230 307 43 7 chr1 242643827 242643967 -20386 + L1ME LINE L1 5316 5460 -704 365 252 39 19 chr1 242644243 242644346 -20007 + L1MC4 LINE L1 6615 6719 -1323 411 296 131 0 chr1 242646144 242646350 -18003 - MER57A LTR ERV1 -2 401 169 303 229 147 47 chr1 242646355 242646525 -17828 - MER57-int LTR ERV1 -3739 1197 1011 717 241 104 2 chr1 242646729 242647012 -17341 - MER34C LTR ERV1 -172 413 59 553 244 58 43 chr1 242647942 242648195 -16158 - MER57-int LTR ERV1 -7237 300 3 7938 115 11 21 chr1 242648218 242649580 -14773 + L1P LINE L1 2576 3924 -2222 532 133 0 0 chr1 242649576 242649666 -14687 - L1M3 LINE L1 -514 5820 5731 * 397 272 48 24 chr1 242649771 242649896 -14457 - L2 LINE L2 -1 3271 3144 207 271 75 75 chr1 242651117 242651250 -13103 - L2 LINE L2 -7 3265 3133 * 438 301 79 15 chr1 242651233 242651436 -12917 + MIR SINE MIR 33 248 -14 22 0 0 0 chr1 242652533 242652555 -11798 + AT_rich Low_complexity Low_complexity 1 22 0 292 313 97 23 chr1 242653148 242653365 -10988 - L1MC4a LINE L1 -1892 5916 5684 799 175 39 0 chr1 242653511 242653665 -10688 + MER3 DNA MER1_type 18 130 -79 2521 59 0 0 chr1 242653867 242654172 -10181 - AluY SINE Alu -6 305 1 566 292 173 10 chr1 242654388 242654700 -9653 - MER115 DNA AcHobo -2 691 329 326 346 30 15 chr1 242654732 242654865 -9488 - MER115 DNA AcHobo -488 205 71 596 269 87 19 chr1 242655283 242655491 -8862 + L2 LINE L2 3002 3223 -90 22 0 0 0 chr1 242656114 242656136 -8217 + AT_rich Low_complexity Low_complexity 1 22 0 2390 83 7 0 chr1 242656139 242656441 -7912 + AluSp SINE Alu 1 304 -9 2239 79 3 10 chr1 242658278 242658569 -5784 - AluY SINE Alu -22 289 1 317 184 19 177 chr1 242658590 242658748 -5605 - MER5B DNA MER1_type -29 149 17 4070 208 44 15 chr1 242658767 242659666 -4687 + Charlie5 DNA MER1_type 985 1925 -699 2249 93 0 7 chr1 242659666 242659956 -4397 - AluSx SINE Alu -18 294 7 4070 208 44 15 chr1 242659956 242660184 -4169 + Charlie5 DNA MER1_type 1925 2145 -479 1488 99 95 8 chr1 242660337 242660579 -3774 - MSTA LTR MaLR 0 428 166 1823 32 0 0 chr1 242660681 242660900 -3453 - L1P2 LINE L1 -445 5709 5491 6716 52 17 0 chr1 242660900 242661899 -2454 + L1P2 LINE L1 4472 5484 -670 676 287 38 8 chr1 242661888 242662149 -2204 - L1MCa LINE L1 -5897 529 261 * 1461 139 4 19 chr1 242662177 242662443 -1910 - L1 LINE L1 -1224 4922 4661 2104 133 0 13 chr1 242662532 242662834 -1519 - AluSg SINE Alu -12 298 1 640 200 0 0 chr1 242662834 242662974 -1379 - L1P LINE L1 -3998 2148 2009 26 82 0 0 chr1 242663073 242663134 -1219 + AT_rich Low_complexity Low_complexity 1 61 0